Sequence	K Count	Modifications	Mass	Mass Fractional Part	Protein Groups	Proteins	Gene Names	Protein Names	Unique (Groups)	Unique (Proteins)	Acetyl (K)	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Identification type JSi09	Identification type JSi10	Identification type JSi11	Identification type JSi12	Fraction Average	Fraction Std. Dev.	Fraction 1	Fraction 2	Fraction 3	Fraction 11	Fraction 12	Fraction 13	Fraction 14	Fraction 15	Fraction 16	Experiment JSi09	Experiment JSi10	Experiment JSi11	Experiment JSi12	Retention time	Calibrated retention time	Charges	PEP	MS/MS scan number	Raw file	Score	Delta score	Reverse	Potential contaminant	Ratio H/L	Ratio H/L normalized	Ratio H/L variability [%]	Ratio H/L count	Ratio H/L iso-count	Ratio H/L type	Ratio H/L JSi09	Ratio H/L normalized JSi09	Ratio H/L variability [%] JSi09	Ratio H/L count JSi09	Ratio H/L iso-count JSi09	Ratio H/L type JSi09	Ratio H/L JSi10	Ratio H/L normalized JSi10	Ratio H/L variability [%] JSi10	Ratio H/L count JSi10	Ratio H/L iso-count JSi10	Ratio H/L type JSi10	Ratio H/L JSi11	Ratio H/L normalized JSi11	Ratio H/L variability [%] JSi11	Ratio H/L count JSi11	Ratio H/L iso-count JSi11	Ratio H/L type JSi11	Ratio H/L JSi12	Ratio H/L normalized JSi12	Ratio H/L variability [%] JSi12	Ratio H/L count JSi12	Ratio H/L iso-count JSi12	Ratio H/L type JSi12	Intensity	Intensity L	Intensity H	Intensity JSi09	Intensity L JSi09	Intensity H JSi09	Intensity JSi10	Intensity L JSi10	Intensity H JSi10	Intensity JSi11	Intensity L JSi11	Intensity H JSi11	Intensity JSi12	Intensity L JSi12	Intensity H JSi12	id	Protein group IDs	Peptide ID	Evidence IDs	MS/MS IDs	Best MS/MS	Acetyl (K) site IDs	Oxidation (M) site IDs	MS/MS Count	Taxonomy IDs
AAAAAAAAAAAAAAAGAGAGAK	1	Unmodified	1595.838	0.83796706	1840	P55011	SLC12A2	Solute carrier family 12 member 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		2	1	60.677	60.586	2	1.66E-57	52295	160511_QHF_FH_JSI12i_3	222.49	197.64			0.76547	0.7494	21.766	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9153	0.85439	28.86	2	2	Median	0.76547	0.7494	NaN	1	0	Median	65920000	34304000	31617000	0	0	0	0	0	0	33144000	17408000	15735000	32777000	16895000	15881000	0	1840	0	0;1;2;3	0;1;2;3;4;5	5			6	
AAAAAAAAAAGAAGGR	0	Acetyl (Protein N-term)	1239.632	0.63199703	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	61.847	59.417	2	1.5416E-10	53842	160511_QHF_FH_JSI10i_1	186.92	178.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3315	1	4;5;6;7;8	6;7;8;9;10;11;12;13;14	12			9	
AAAAAAAAAPAAAATAPTTAATTAATAAQ	0	Unmodified	2367.203	0.2030165	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	2.86	8		2	1						2	3	2	4	61.992	60.37	2;3;4	3.2825E-15	54991	160511_QHF_FH_JSI11i_1	92.8	86.718			1.1003	1.08	17.242	11	4	Median	1.2876	1.0574	0.42987	2	0	Median	0.87848	0.99273	25.64	3	2	Median	1.1029	1.0858	0.17533	2	1	Median	1.0806	1.1533	10.432	4	1	Median	6778500000	3057700000	3720900000	2234400000	960280000	1274200000	287390000	163350000	124040000	1970800000	858030000	1112700000	2286000000	1076000000	1209900000	2	1466	2	9;10;11;12;13;14;15;16;17;18;19	15;16;17;18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34	16			20	
AAAAAAAAAVSR	0	Unmodified	999.54614	0.54614213	4144	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	5.6		1	4				2	1		2	2	3	1	19.967	16.705	2	0.0007508	10304	160513_QHF_FH_JSI10Kac_4	82.287	44.559			0.86864	0.88673	21.353	6	1	Median	0.9869	0.81447	NaN	1	0	Median	0.75471	0.88673	2.2588	2	0	Median	0.84391	0.80749	31.19	2	0	Median	1.2251	1.2278	NaN	1	1	Median	150440000	78672000	71765000	32033000	17797000	14236000	31123000	18214000	12909000	57641000	28506000	29135000	29639000	14154000	15485000	3	4144	3	20;21;22;23;24;25;26;27	35;36;37;38;39;40;41;42;43	38			8	
AAAAAAAAVPSAGPAGPAPTSAAGR	0	Unmodified	2031.0498	0.049750745	5630	Q9Y4H2	IRS2	Insulin receptor substrate 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	4									1	1		2	42.841	42.318	2;3	7.1185E-09	38486	160511_QHF_FH_JSI12i_1	83.729	63.266			1.1389	1.2508	18.025	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1998	1.4209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.081	1.1012	NaN	1	0	Median	117970000	56241000	61730000	0	0	0	62084000	26433000	35651000	0	0	0	55887000	29808000	26079000	4	5630	4	28;29;30;31	44;45;46;47	46			4	
AAAAAAAGDSDSWDADAFSVEDPVRK	1	Acetyl (Protein N-term)	2634.1834	0.18340327	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	83.199	82.734	2;3	7.8408E-69	75069	160511_QHF_FH_JSI10i_1	129.62	118.96			1.0983	1.1596	7.9481	8	0	Median	1.4031	1.156	17.349	2	0	Median	1.0386	1.2126	3.1669	2	0	Median	1.1146	1.0909	3.3606	2	0	Median	1.0902	1.1596	2.6374	2	0	Median	1006100000	457690000	548410000	165620000	70058000	95561000	304080000	144030000	160060000	282520000	135800000	146720000	253880000	107800000	146080000	5	571	5	32;33;34;35;36;37;38;39	48;49;50;51;52;53;54;55;56;57;58;59;60;61	58			14	
AAAAAAALQAK	1	Unmodified	955.54508	0.5450795	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	6.03	4	4	4		3	4	4	4	5	7	8	9	8	23.7	18.042	2	8.613E-27	5661	160513_QHF_FH_JSI9Kac_3	179.73	141.49			0.98755	0.98437	26.363	31	5	Median	1.1883	1.0052	8.685	6	0	Median	0.76413	0.91723	11.11	8	0	Median	1.0595	1.0651	35.076	9	3	Median	0.88497	0.95987	33.339	8	2	Median	16732000000	8250100000	8481800000	3799200000	1797400000	2001900000	4150400000	2087200000	2063200000	4426000000	2179400000	2246700000	4356200000	2186200000	2170000000	6	1457	6	40;41;42;43;44;45;46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64;65;66;67;68;69;70;71	62;63;64;65;66;67;68;69;70;71;72;73;74;75;76;77;78;79;80;81;82;83;84;85;86;87;88;89;90;91;92;93;94;95;96;97;98;99;100;101;102;103;104;105;106;107;108;109;110;111;112;113;114;115;116;117;118;119;120;121;122;123;124;125	91			64	
AAAAAAGAASGLPGPVAQGLK	1	Acetyl (Protein N-term)	1789.9686	0.96864688	4193	Q96P70	IPO9	Importin-9	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	4	2	2	81.735	81.301	2;3	1.5106E-28	73845	160511_QHF_FH_JSI10i_1	170.66	156.21			1.2479	1.192	215.76	9	5	Median	4.8336	3.9905	190.79	2	1	Median	0.89448	1.0472	357.4	3	3	Plateau	5.3887	5.2084	234.01	2	1	Median	1.1348	1.1762	1.8831	2	0	Median	1365900000	541030000	824840000	263710000	93984000	169730000	338410000	140950000	197460000	431460000	160060000	271400000	332290000	146030000	186260000	7	4193	7	72;73;74;75;76;77;78;79;80;81	126;127;128;129;130;131;132;133;134;135;136;137	132			12	
AAAAAAGAGPEMVR	0	Acetyl (Protein N-term)	1283.6292	0.62921983	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	49.647	48.967	2	0.00011187	44084	160511_QHF_FH_JSI10i_1	117.67	112.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	1309	8	82;83;84;85;86;87;88	138;139;140;141;142;143;144	140			7	
AAAAAAGAGPEMVR	0	Acetyl (Protein N-term);Oxidation (M)	1299.6241	0.62413446	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	1	1	0	By MS/MS		By MS/MS	By MS/MS	8.75	4.49	1			2	1					1		1	2	43.396	34.51	2	0.00024476	14477	160513_QHF_FH_JSI12Kacf_1	79.974	68.484			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	1309	8	89;90;91;92	145;146;147;148	146		963	4	
AAAAAAGEAR	0	Acetyl (Protein N-term)	899.44609	0.44609374	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	4.33	4.71	2			1						1		1	1	20.637	17.629	2	0.00097702	15116	160511_QHF_FH_JSI9i_1	69.598	49.962			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	927	9	93;94;95	149;150;151	150			3	
AAAAAAGEARR	0	Acetyl (Protein N-term)	1055.5472	0.54720476	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	15.77	15.13	2	6.2217E-07	12510	160511_QHF_FH_JSI9i_2	118.5	98.859			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	927	10	96;97;98	152;153;154	153			3	
AAAAAAGPSPGSGPGDSPEGPEGEAPERR	0	Acetyl (Protein N-term)	2686.2219	0.22191404	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			39.76	39.368	3	1.5349E-05	35294	160511_QHF_FH_JSI10i_1	47.018	43.141			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	5329	11	99	155	155			1	
AAAAAAGSGTPREEEGPAGEAAASQPQAPTSVPGAR	0	Acetyl (Protein N-term)	3329.5872	0.58723826	4942	Q9NR33	POLE4	DNA polymerase epsilon subunit 4	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		52.918	52.506	3	3.6437E-24	47485	160511_QHF_FH_JSI11i_1	99.372	93.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	4942	12	100	156;157	156			2	
AAAAAATAAAAASIR	0	Acetyl (Protein N-term)	1298.6943	0.69426293	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	78.751	78.149	2	6.8824E-56	71053	160511_QHF_FH_JSI12i_1	190.15	151.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	3785	13	101;102;103	158;159;160;161	159			4	
AAAAAEQQQFYLLLGNLLSPDNVVR	0	Acetyl (Protein N-term)	2742.4341	0.43407907	127	O00410	IPO5	Importin-5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.92	4	2							3	3	1	4	1	103.48	100.31	2;3	2.7114E-23	94656	160511_QHF_FH_JSI11i_1	138.93	131.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	127	14	104;105;106;107;108;109;110;111;112	162;163;164;165;166;167;168;169;170	162			9	
AAAAAEQQQFYLLLGNLLSPDNVVRK	1	Acetyl (Protein N-term)	2870.529	0.52904209	127	O00410	IPO5	Importin-5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.87	1	4	1						4	2	3	3	2	101.83	98.41	3	4.7125E-44	52265	160513_QHF_FH_JSI9Kac_6	119.33	105.02			1.1729	1.2145	74.506	8	1	Median	4.0156	3.3662	149.3	2	1	Median	1.0052	1.2145	1.2171	2	0	Median	1.2459	1.2268	8.3947	2	0	Median	1.0489	1.1382	16.647	2	0	Median	2033800000	873030000	1160700000	279900000	90325000	189580000	434830000	186690000	248130000	840920000	375240000	465680000	478110000	220770000	257350000	16	127	15	113;114;115;116;117;118;119;120;121;122	171;172;173;174;175;176;177;178;179;180	179			10	
AAAAAGTATSQR	0	Acetyl (Protein N-term)	1116.5523	0.55234972	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.12	4			2	1					1	2	2	2	22.008	18.543	2	6.3645E-06	15804	160511_QHF_FH_JSI9i_1	132.01	120.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	5548	16	123;124;125;126;127;128;129	181;182;183;184;185;186;187;188	186			8	
AAAAAMAEQESAR	0	Acetyl (Protein N-term)	1317.5983	0.59831364	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.389	47.708	2	5.9169E-08	43245	160511_QHF_FH_JSI12i_1	185.6	173.07			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	3231	17	130;131;132;133	189;190;191;192	190			4	
AAAAAQGGGGGEPR	0	Acetyl (Protein N-term)	1210.5691	0.56906242	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	2	1	2	18.267	14.943	2	6.5565E-06	12917	160511_QHF_FH_JSI11i_1	83.397	74.183			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	1289	18	134;135;136;137;138;139	193;194;195;196;197;198	193			6	
AAAAASAPQQLSDEELFSQLRR	0	Acetyl (Protein N-term)	2400.2034	0.20335085	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	86.668	86.182	3	8.3254E-06	78486	160511_QHF_FH_JSI12i_1	66.325	54.668			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	5538	19	140	199	199			1	
AAAAASASQDELNQLER	0	Acetyl (Protein N-term)	1785.8493	0.8493196	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.325	69.78	2	8.2991E-11	63277	160511_QHF_FH_JSI10i_1	150.69	125.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	2997	20	141;142;143;144	200;201;202;203;204	203			5	
AAAAAWEEPSSGNGTAR	0	Unmodified	1644.7492	0.74921163	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	1	2	1	28.154	27.476	2	7.8705E-66	24278	160511_QHF_FH_JSI11i_1	234.92	210.89			0.9771	0.9579	13.952	5	1	Median	1.0041	0.8495	22.857	2	1	Median	0.78544	0.89979	NaN	1	0	Median	1.002	0.9579	NaN	1	0	Median	0.9771	1.022	NaN	1	0	Median	494800000	231900000	262900000	94711000	38012000	56699000	119960000	65774000	54181000	155680000	70885000	84796000	124450000	57226000	67226000	22	5200	21	145;146;147;148;149;150	205;206;207;208;209;210;211;212;213;214;215	207			11	
AAAADSFSGGPAGVR	0	Acetyl (Protein N-term)	1374.6528	0.65279205	4037	Q96E14	RMI2	RecQ-mediated genome instability protein 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		52.222	51.812	2	0.00013239	46908	160511_QHF_FH_JSI11i_1	91.313	79.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	4037	22	151;152	216;217	216			2	
AAAAEGVLATR	0	Acetyl (Protein N-term)	1070.572	0.57202253	3135	Q6QNY1	BLOC1S2	Biogenesis of lysosome-related organelles complex 1 subunit 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		58.58	58.172	2	0.00015102	52543	160511_QHF_FH_JSI10i_1	85.355	66.624			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	3135	23	153;154	218;219	219			2	
AAAAELSLLEK	1	Acetyl (Protein N-term)	1156.634	0.63395409	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.194	88.759	2	5.1268E-24	80582	160511_QHF_FH_JSI10i_1	102.06	76.502			1.0783	1.1229	5.4505	4	0	Linear	1.1876	0.98875	NaN	1	0	Median	0.96672	1.1208	NaN	1	0	Median	1.1483	1.0929	NaN	1	0	Median	1.0126	1.0793	NaN	1	0	Median	1106600000	536990000	569650000	204000000	96834000	107160000	331590000	173150000	158440000	315560000	142670000	172890000	255490000	124330000	131160000	25	323	24	155;156;157;158	220;221;222;223;224;225;226;227;228;229;230;231	227			12	
AAAAGGGGPGTAVGATGSGIAAAAAGLAVYR	0	Acetyl (Protein N-term)	2555.3092	0.30921291	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.91	100.79	3	5.3613E-49	91485	160511_QHF_FH_JSI11i_1	164.96	158.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	3907	25	159;160;161;162	232;233;234;235	232			4	
AAAAPDSR	0	Acetyl (Protein N-term)	799.38243	0.38243085	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	10.226	9.855	1	0.032448	7783	160511_QHF_FH_JSI12i_1	31.935	23.595			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	5577	26	163	236	236			1	
AAAAPVAADDDERR	0	Acetyl (Protein N-term)	1468.6906	0.69063412	4735	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		23.925	23.372	2	1.1036E-06	20038	160511_QHF_FH_JSI9i_1	126.33	100.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	4735	27	164;165;166	237;238;239;240;241	241			5	
AAAAQFQVPWLESVLIVVSNNIDEEALAR	0	Unmodified	3152.6506	0.65061379	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.5	6.06		1							3	1	2		1	103.37	98.129	3;4	1.3428E-06	57474	160513_QHF_FH_JSI10Kac_6	75.416	61.352			0.6831	0.81553	27.669	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6831	0.81553	27.669	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	333650000	194580000	139070000	3606700	0	3606700	321630000	194580000	127050000	0	0	0	8412300	0	8412300	29	3167	28	167;168;169;170	242;243;244;245	244			4	
AAAAQLSLTQLSSGNPVYEK	1	Acetyl (Protein N-term)	2089.0691	0.069148783	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	1	0	0	By MS/MS				1	0	2									2				93.587	92.834	2	6.0165E-19	82475	160511_QHF_FH_JSI9i_1	130.07	115.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3626300	0	3626300	3626300	0	3626300	0	0	0	0	0	0	0	0	0	30	1537	29	171;172	246;247	247			2	
AAAASAAEAGIATTGTEDSDDALLK	1	Unmodified	2319.1078	0.10777871	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.273	61.638	2;3	1.4253E-166	55750	160511_QHF_FH_JSI10i_1	296.52	275.29			0.9606	1.0023	11.574	8	1	Median	1.1472	0.93114	21.965	2	1	Median	0.80162	0.93541	7.433	2	0	Median	0.96239	0.93588	16.192	2	0	Median	0.97188	1.0275	1.1835	2	0	Median	1320900000	705310000	615570000	259520000	110080000	149430000	379630000	218920000	160710000	359350000	201410000	157940000	322380000	174900000	147480000	31	1842	30	173;174;175;176;177;178;179;180	248;249;250;251;252;253;254;255;256;257;258;259;260;261;262;263;264;265	261			18	
AAAASVPNADGLK	1	Unmodified	1183.6197	0.619701	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	31.583	31.202	2	1.0148E-06	27784	160511_QHF_FH_JSI10i_1	127.42	88.402			0.7495	0.73571	10.845	3	0	Median	NaN	NaN	NaN	0	0	Median	0.54838	0.64078	NaN	1	0	Median	0.7495	0.73571	NaN	1	0	Median	0.77959	0.79359	NaN	1	0	Median	280860000	168850000	112020000	0	0	0	97301000	57164000	40136000	100630000	62062000	38565000	82935000	49620000	33314000	32	11	31	181;182;183	266;267;268;269;270	270			5	
AAAAVAR	0	Unmodified	628.36566	0.36565857	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0.632	1	3	1							1	2	1	1	5.9935	5.7571	2	0.036298	3631	160511_QHF_FH_JSI9i_2	49.211	17.632			0.78698	0.85165	32.39	5	0	Median	0.78698	0.64741	NaN	1	0	Median	0.51071	0.61024	47.14	2	0	Median	0.85463	0.87673	NaN	1	0	Median	0.98593	0.97753	NaN	1	0	Median	4587100000	2581800000	2005300000	1159300000	591020000	568330000	2081100000	1245200000	835860000	1303600000	722150000	581470000	43080000	23437000	19643000	33	534	32	184;185;186;187;188	271	271			1	
AAAAVGAGHGAGGPGAASSSGGAR	0	Acetyl (Protein N-term)	1905.9041	0.90414914	4149	Q96K37	SLC35E1	Solute carrier family 35 member E1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	24.942	24.463	2;3	2.5202E-36	21042	160511_QHF_FH_JSI9i_1	201.44	184			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	4149	33	189;190;191;192;193	272;273;274;275;276	276			5	
AAAAVQGGR	0	Acetyl (Protein N-term)	841.44061	0.44061443	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	10	3.7	1			3	3						2	3	2	20.695	14.452	2	6.7794E-05	6673	160513_QHF_FH_JSI10Kac_1	97.068	78.285			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	2596	34	194;195;196;197;198;199;200	277;278;279;280;281;282;283	282			7	
AAAAVSSAK	1	Acetyl (Protein N-term)	816.43413	0.43413207	1692	P49914	MTHFS	5-formyltetrahydrofolate cyclo-ligase	yes	yes	0	1	0	0		By MS/MS	By MS/MS		11	0				3							1	2		27.071	19.47	2	0.0049144	8514	160513_QHF_FH_JSI11Kac_1	54.157	37.23			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	1692	35	201;202;203	284;285;286	284			3	
AAAAVVAAAAR	0	Unmodified	940.54541	0.54541385	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12	5.2			1					3		1	1	2		28.918	21.832	2	0.00083045	13111	160513_QHF_FH_JSI11Kac_5	86.794	68.885			3.2683	0.92051	65.024	4	3	Linear	1.054	0.89725	NaN	1	0	Median	0.61738	0.72982	NaN	1	1	Median	1.7819	1.7022	83.318	2	2	Median	NaN	NaN	NaN	0	0	Median	51312000	16520000	34792000	3803200	1874800	1928400	3578500	2441500	1137000	43930000	12204000	31726000	0	0	0	37	3798	36	204;205;206;207	287;288;289;290;291	290			5	
AAAAVVEFQR	0	Acetyl (Protein N-term)	1102.5771	0.57710791	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	5.86	4				1	4	2			2	4	2	3	65.622	58.74	2	4.3105E-07	58433	160511_QHF_FH_JSI11i_1	170.22	152.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	109	37	208;209;210;211;212;213;214;215;216;217;218	292;293;294;295;296;297;298;299;300;301;302;303;304;305;306	293			15	
AAAAVVVPAEWIK	1	Acetyl (Protein N-term)	1365.7656	0.76563696	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	101.53	101.42	2	1.0058E-12	92160	160511_QHF_FH_JSI10i_1	118.71	106.48			1.1227	1.0267	11.734	4	0	Linear	0.99064	0.81717	NaN	1	0	Median	0.86669	1.0198	NaN	1	0	Median	1.0808	1.0442	NaN	1	0	Median	0.98514	1.0336	NaN	1	0	Median	664290000	338650000	325640000	156300000	81781000	74523000	145740000	97248000	48491000	216040000	102220000	113820000	146210000	57406000	88800000	39	3675	38	219;220;221;222;223	307;308;309;310;311;312	311			6	
AAACYVVRGGTLYYQR	0	Unmodified	1846.9148	0.91483717	711	O95625	ZBTB11	Zinc finger and BTB domain-containing protein 11	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			84.148	82.902	3	0.057315	69470	160511_QHF_FH_JSI10i_3	21.093	2.955			1.443	1.6731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.443	1.6731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12637000	3385900	9251100	0	0	0	12637000	3385900	9251100	0	0	0	0	0	0	40	711	39	224	313	313			1	
AAADGALPEAAALEQPAELPASVR	0	Acetyl (Protein N-term)	2359.202	0.20195387	1218	P23025	XPA	DNA repair protein complementing XP-A cells	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.829	95.53	2	3.0054E-09	84666	160511_QHF_FH_JSI9i_1	112.72	106.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	1218	40	225;226;227;228	314;315;316;317	317			4	
AAADGGGPGGASVGTEEDGGGVGHR	0	Acetyl (Protein N-term)	2178.9526	0.95261548	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	31.289	30.58	2;3	7.7652E-56	27478	160511_QHF_FH_JSI12i_1	288.46	279.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	28	41	229;230;231;232;233;234	318;319;320;321;322;323;324	320			7	
AAADTLQGPMQAAYR	0	Unmodified	1562.7511	0.75112588	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.2	0.4	4	1								3	1		1	47.394	46.625	2	9.192E-12	41492	160511_QHF_FH_JSI9i_1	110.93	86.824			0.9874	1.0091	23.394	3	2	Median	0.9097	0.7292	NaN	1	0	Median	0.98903	1.1483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9874	1.0091	NaN	1	1	Median	177920000	83477000	94438000	41543000	18659000	22884000	70630000	33652000	36978000	0	0	0	65743000	31166000	34577000	43	3100	42	235;236;237;238;239	325;326;327;328;329	327			4	
AAAEAAAEAK	1	Unmodified	901.45051	0.45051041	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	5.65	4	1			3	3				1	3	4	3	7.5077	3.4149	2	2.0111E-06	2987	160513_QHF_FH_JSI12Kac_3	123.86	38.184			0.81038	0.89818	24.424	11	1	Median	1.1825	0.97392	NaN	1	0	Median	0.75987	0.89818	2.1287	3	0	Plateau	0.92469	0.88004	38.364	4	1	Median	0.75817	0.80317	16.175	3	0	Median	3065700000	1438800000	1627000000	727900000	325440000	402460000	835280000	389090000	446190000	690810000	324270000	366530000	811740000	399950000	411790000	44	5436	43	240;241;242;243;244;245;246;247;248;249;250	330;331;332;333;334;335;336;337;338;339;340;341;342	340			13	
AAAEAGGDDAR	0	Acetyl (Protein N-term)	1044.4472	0.44721595	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	2	2	12.114	9.3647	2	4.2037E-06	8578	160511_QHF_FH_JSI12i_1	129.38	118.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	23	44	251;252;253;254;255;256	343;344;345;346;347;348	344			6	
AAAEDVNVTFEDQQK	1	Unmodified	1663.7689	0.76894402	4923	Q9NQP4	PFDN4	Prefoldin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.156	41.509	2	7.2661E-98	37654	160511_QHF_FH_JSI12i_1	259.47	242.11			1.0251	0.98296	4.912	4	0	Median	1.1433	0.9466	NaN	1	0	Median	0.80749	0.93973	NaN	1	0	Median	1.0295	1.0207	NaN	1	0	Median	1.0207	1.0321	NaN	1	0	Median	712800000	375920000	336880000	119950000	60700000	59251000	210180000	118970000	91215000	200980000	111490000	89487000	181690000	84761000	96927000	46	4923	45	257;258;259;260	349;350;351;352;353;354;355	353			7	
AAAEEEDGGPEGPNR	0	Acetyl (Protein N-term)	1539.6437	0.6437435	4328	Q99942	RNF5	E3 ubiquitin-protein ligase RNF5	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		23.251	23.102	2	2.0216E-05	20134	160511_QHF_FH_JSI11i_1	75.819	73.065			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	4328	46	261	356	356			1	
AAAEEEDGGPEGPNRER	0	Acetyl (Protein N-term)	1824.7874	0.78744763	4328	Q99942	RNF5	E3 ubiquitin-protein ligase RNF5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.377	18.872	2	3.3502E-11	16085	160511_QHF_FH_JSI11i_1	134.75	120.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48	4328	47	262;263;264;265	357;358;359;360	357			4	
AAAEEEPKPK	2	Acetyl (Protein N-term)	1110.5557	0.55570376	1856	P55263	ADK	Adenosine kinase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	3	2	13.509	13.071	2	2.9033E-07	10794	160511_QHF_FH_JSI12i_1	125.82	105.83			0.57151	0.555	204.22	8	8	Median	0.93927	0.76759	180.41	2	2	Median	0.20498	0.24228	251.77	2	2	Median	0.3733	0.36467	310.56	2	2	Median	0.6974	0.72295	284.56	2	2	Median	649500000	356270000	293230000	158740000	79779000	78960000	186210000	110070000	76144000	158290000	84449000	73841000	146260000	81978000	64283000	49	1856	48	266;267;268;269;270;271;272;273;274	361;362;363;364;365;366;367;368;369	364			9	
AAAEEQIK	1	Unmodified	858.4447	0.44469675	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.8244	6.5129	2	0.0024882	6297	160511_QHF_FH_JSI10i_1	79.713	31.864			0.95157	0.94018	23.045	7	0	Median	0.9904	0.81997	NaN	1	0	Median	0.85738	1.0245	17.951	2	0	Median	1.0277	1.0136	10.632	2	0	Median	0.70988	0.74513	36.525	2	0	Median	2124400000	1006100000	1118300000	523600000	198150000	325450000	638930000	292070000	346870000	468420000	229550000	238870000	493490000	286330000	207160000	50	4193	49	275;276;277;278;279;280;281	370;371;372;373	372			4	
AAAEGLMSLLR	0	Unmodified	1130.6118	0.61177885	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.424	79.169	2	1.0871E-05	68737	160511_QHF_FH_JSI12i_3	109.66	62.466			0.7553	0.78554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7553	0.78554	NaN	1	1	Median	38474000	23636000	14838000	0	0	0	0	0	0	0	0	0	38474000	23636000	14838000	51	1347	50	282	374	374			1	
AAAEQAISVR	0	Unmodified	1014.5458	0.54580778	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.431	20.474	2	0.041969	17435	160511_QHF_FH_JSI9i_2	44.863	22.732			0.74438	0.63236	NaN	1	1	Median	0.74438	0.63236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21747000	11357000	10389000	21747000	11357000	10389000	0	0	0	0	0	0	0	0	0	52	2175	51	283	375	375			1	
AAAETQSLR	0	Acetyl (Protein N-term)	987.49852	0.49852324	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.34	3			1	2					1	1	3	1	29.438	25.05	2	5.8099E-05	22047	160511_QHF_FH_JSI9i_1	91.783	77.007			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	2432	52	284;285;286;287;288;289	376;377;378;379;380;381	379			6	
AAAEVAGQFVIK	1	Unmodified	1202.6659	0.66592292	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.833	3	2	2							1	3	2	1	54.419	53.556	2	3.7316E-05	44704	160511_QHF_FH_JSI10i_3	104.05	92.2			0.81558	0.8564	9.5483	7	0	Median	0.97646	0.79163	NaN	1	0	Median	0.7429	0.92828	10.269	3	0	Plateau	0.86943	0.85891	12.365	2	0	Median	0.90308	0.95694	NaN	1	0	Median	955390000	516440000	438950000	25925000	13072000	12853000	390110000	221310000	168800000	333200000	181920000	151290000	206150000	100150000	106000000	54	793	53	290;291;292;293;294;295;296	382;383;384;385;386;387;388	383			5	
AAAEVNQDYGLDPK	1	Unmodified	1489.7049	0.7048872	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		37.687	37.404	2	1.4848E-11	33686	160511_QHF_FH_JSI11i_1	196.15	170.77			0.802	0.77972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.802	0.77972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	208350000	117270000	91077000	0	0	0	0	0	0	208350000	117270000	91077000	0	0	0	55	887	54	297	389	389			1	
AAAFEEQENETVVVK	1	Unmodified	1662.8101	0.81008055	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	45.624	44.95	2	7.67E-35	40171	160511_QHF_FH_JSI9i_1	164.04	139.25			0.93241	0.88513	9.7842	4	0	Median	1.0064	0.83152	NaN	1	0	Median	0.65791	0.77515	NaN	1	0	Median	0.96062	0.94219	NaN	1	0	Median	0.90503	0.94588	NaN	1	0	Median	701610000	345630000	355970000	158340000	74699000	83644000	193080000	96881000	96201000	185990000	88992000	96998000	164190000	85063000	79130000	56	5616	55	298;299;300;301;302	390;391;392;393;394;395;396;397;398	398			9	
AAAFEQLQK	1	Unmodified	1004.5291	0.52909508	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	4	3					3			1	3	3	3	33.791	30.323	2	5.2914E-06	25499	160511_QHF_FH_JSI12i_2	116.25	88.032			0.91427	0.98452	14.88	10	0	Median	1.003	0.8272	NaN	1	0	Median	0.89979	1.059	15.646	3	0	Median	0.8143	0.80623	23.564	3	0	Plateau	0.95721	1.0242	5.6404	3	0	Median	1544300000	862260000	681990000	157130000	79154000	77976000	415650000	248270000	167380000	512060000	285370000	226690000	459420000	249470000	209950000	57	611	56	303;304;305;306;307;308;309;310;311;312	399;400;401;402;403;404;405;406;407;408;409;410;411;412;413	401			15	
AAAFQVAPHSHGEEAVAQDRIPSGK	1	Unmodified	2572.2782	0.27824713	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				41.49	39.954	5	0.00010976	32677	160511_QHF_FH_JSI9i_3	43.888	40.79			2.3688	1.9569	NaN	1	0	Median	2.3688	1.9569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46653000	17278000	29375000	46653000	17278000	29375000	0	0	0	0	0	0	0	0	0	58	681	57	313	414	414			1	
AAAGAAATHLEVAR	0	Unmodified	1307.6946	0.69459728	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	22.338	22.333	2;3	7.2913E-05	18770	160511_QHF_FH_JSI11i_3	85.163	70.287			1.0385	0.98263	9.1919	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0385	0.98263	0.47609	2	2	Median	1.0449	1.0623	13.873	2	2	Median	261560000	116130000	145430000	0	0	0	0	0	0	148450000	61304000	87141000	113120000	54823000	58292000	59	4234	58	314;315;316;317	415;416;417;418	415			4	
AAAGEDYK	1	Unmodified	823.3712	0.37119746	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.7609	4.0947	2	0.0028104	4166	160511_QHF_FH_JSI12i_1	77.282	68.042			1.3226	1.4794	33.851	6	0	Median	3.8166	3.0968	NaN	1	0	Median	1.194	1.4257	16.367	2	0	Median	1.4535	1.4189	17.352	2	0	Median	1.2809	1.3673	NaN	1	0	Median	2338100000	1012400000	1325700000	423330000	116620000	306710000	601460000	297690000	303770000	648300000	321060000	327230000	665000000	277050000	387950000	60	1226	59	318;319;320;321;322;323	419;420;421;422;423;424	421			6	
AAAGEFADDPCSSVK	1	Unmodified	1523.6562	0.65622244	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	37.412	34.018	2	1.4399E-22	30242	160511_QHF_FH_JSI10i_1	143.97	119.18			0.96028	0.93494	24.334	6	2	Median	1.1129	0.95158	NaN	1	0	Median	0.78822	0.91859	NaN	1	0	Median	0.81496	0.80692	3.9072	2	1	Median	1.3214	1.3637	2.9812	2	1	Median	223180000	113490000	109690000	32026000	15179000	16847000	51218000	24638000	26580000	66453000	35886000	30567000	73483000	37784000	35699000	61	1421	60	324;325;326;327;328;329;330	425;426;427;428;429;430;431;432;433;434;435	431			11	
AAAGGAEGRR	0	Acetyl (Protein N-term)	956.47879	0.47879085	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	1	0	1			By MS/MS		14	0							1					1		6.2994	-1.3033	2	0.028824	2247	160513_QHF_FH_JSI11Kac_4	37.558	27.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	62	3325	61	331	436	436			1	
AAAGGGGGGAAAAGR	0	Acetyl (Protein N-term)	1112.5323	0.53228298	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.92	4	1		2	1					1	2	3	2	11.713	8.7081	2	4.4946E-10	7767	160511_QHF_FH_JSI9i_1	73.499	69.565			29.403	24.403	NaN	1	0	Median	29.403	24.403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	361170000	16185000	344990000	361170000	16185000	344990000	0	0	0	0	0	0	0	0	0	63	5388	62	332;333;334;335;336;337;338;339	437;438;439;440;441;442;443;444	441			8	
AAAGGQGSAVAAEAEPGKEEPPAR	1	Unmodified	2220.0771	0.077087707	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.275	26.693	3	5.4454E-16	23185	160511_QHF_FH_JSI9i_1	117.01	87.74			1.1288	1.0919	5.1195	4	0	Median	1.2409	1.0509	NaN	1	0	Median	0.94212	1.1201	NaN	1	0	Median	1.1082	1.0644	NaN	1	0	Median	1.1498	1.1752	NaN	1	0	Median	209200000	95968000	113230000	37783000	15142000	22640000	67931000	33640000	34291000	46351000	23372000	22978000	57132000	23812000	33319000	64	4609	63	340;341;342;343	445;446;447;448;449;450	450			6	
AAAGLGGGDSGDGTAR	0	Unmodified	1331.6066	0.60657014	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	12.779	11.056	2	2.2055E-10	9409	160511_QHF_FH_JSI12i_1	149.23	116.9			1.07	1.1007	3.9254	5	0	Median	1.3179	1.0793	NaN	1	0	Median	0.9444	1.1007	NaN	1	0	Median	1.2005	1.1311	NaN	1	0	Median	1.0539	1.1318	6.5457	2	0	Median	340890000	158100000	182780000	92133000	34495000	57638000	87365000	47003000	40361000	64555000	22135000	42420000	96835000	54470000	42365000	65	4255	64	344;345;346;347;348	451;452;453;454;455;456	452			6	
AAAGVVSGK	1	Acetyl (Protein N-term)	800.43922	0.43921744	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				25.183	23.939	2	0.002696	20539	160511_QHF_FH_JSI9i_1	31.422	20.605			0.63235	0.51044	NaN	1	0	Median	0.63235	0.51044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49580000	25052000	24528000	49580000	25052000	24528000	0	0	0	0	0	0	0	0	0	66	3699	65	349	457	457			1	
AAAIGIDLGTTYSCVGVFQHGK	1	Unmodified	2264.126	0.12595216	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							1	2	4	5	82.044	81.482	2;3;4	3.626E-71	70824	160511_QHF_FH_JSI12i_3	229.6	214.99			1.0341	1.0135	20.906	12	4	Median	1.022	0.89243	NaN	1	0	Median	0.65447	0.77744	15.198	2	0	Median	1.0029	0.91853	4.1553	4	2	Linear	1.1773	1.3043	9.0776	5	2	Median	1728000000	803520000	924520000	57345000	26100000	31245000	169790000	108080000	61719000	499470000	240570000	258900000	1001400000	428780000	572660000	67	954	66	350;351;352;353;354;355;356;357;358;359;360;361	458;459;460;461;462;463;464;465;466;467;468;469;470;471;472;473;474;475;476;477;478;479	474			22	
AAALAAAVAQDPAASGAPSS	0	Unmodified	1695.8428	0.84277766	3681	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.82	55.669	2	0.010052	49439	160511_QHF_FH_JSI9i_1	71.153	57.753			1.6801	1.3962	NaN	1	1	Median	1.6801	1.3962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45481000	13934000	31548000	45481000	13934000	31548000	0	0	0	0	0	0	0	0	0	68	3681	67	362	480	480			1	
AAALATVNAWAEQTGMK	1	Unmodified	1731.8614	0.86140461	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	74.485	74.194	2	1.0539E-13	64398	160511_QHF_FH_JSI12i_3	190.1	168.04			1.0043	1.0338	17.489	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0043	1.0338	17.489	2	2	Median	96157000	43961000	52196000	0	0	0	0	0	0	0	0	0	96157000	43961000	52196000	69	2485	68	363;364	481;482	481			2	
AAALDFAR	0	Unmodified	833.43955	0.43955179	4950	Q9NRF2	SH2B1	SH2B adapter protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			41.089	32.471	2	0.048955	18062	160513_QHF_FH_JSI10Kac_6	52.299	2.2746			0.022019	0.026509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.022019	0.026509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20203000	19340000	862990	0	0	0	20203000	19340000	862990	0	0	0	0	0	0	70	4950	69	365	483	483			1	
AAALEAMK	1	Oxidation (M)	819.41604	0.41603916	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.98	5					2	1			1	1	3	3	11.783	8.4331	2	0.014554	17971	160511_QHF_FH_JSI11i_1	60.895	36.923			0.89955	0.97012	32.359	7	0	Median	0.65522	0.54561	NaN	1	0	Median	0.48307	0.57601	NaN	1	0	Median	0.97534	0.93879	9.7662	2	0	Median	0.97494	1.0581	15.571	3	0	Median	474520000	303310000	171220000	87085000	53376000	33710000	132070000	92703000	39371000	130720000	85786000	44938000	124640000	71443000	53197000	71	1386	70	366;367;368;369;370;371;372;373	484;485;486;487	485		1027	4	
AAALEAMK	1	Unmodified	803.42112	0.42112454	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.17	4	2	1				1			1	4	2	1	21.554	20.963	2	0.0014125	17732	160511_QHF_FH_JSI9i_1	84.916	57.953			0.71741	0.87442	40.32	5	5	Median	NaN	NaN	NaN	0	0	Median	0.58898	0.69424	47.029	3	3	Plateau	1.0298	0.99646	NaN	1	1	Median	0.57894	0.60641	NaN	1	1	Median	1646400000	917790000	728610000	0	0	0	877250000	526630000	350610000	527210000	235840000	291370000	241940000	155320000	86619000	72	1386	70	374;375;376;377;378;379;380;381	488;489;490;491;492;493;494;495	493			8	
AAALEAMKDYTK	2	Acetyl (K)	1352.6646	0.66460229	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		68.135	57.112	2	0.0049438	31663	160513_QHF_FH_JSI11Kac_4	67.726	53.428			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1397100	1397100	0	0	0	0	0	0	0	1397100	1397100	0	0	0	0	73	1386	71	382	496	496	1331;1332		1	
AAALEFLNR	0	Unmodified	1003.5451	0.5450795	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.644	56.52	2	0.001802	50153	160511_QHF_FH_JSI11i_3	67.464	38.315			0.75199	0.73167	3.118	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76386	0.71572	NaN	1	0	Median	0.7403	0.74798	NaN	1	1	Median	405950000	246900000	159050000	0	0	0	0	0	0	215740000	143530000	72207000	190210000	103370000	86841000	74	1386	72	383;384	497;498	497			2	
AAALEFLNRFEEAK	1	Unmodified	1607.8308	0.83075641	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	4	2	1	80.015	79.24	2;3	1.4192E-15	70630	160511_QHF_FH_JSI11i_3	166.6	149.2			0.95108	0.91065	31.202	10	1	Median	1.1293	0.93125	10.58	3	0	Median	0.82754	0.98088	48.794	4	1	Median	0.92818	0.86994	3.3049	2	0	Median	0.94641	0.98167	NaN	1	0	Median	2865200000	1449600000	1415600000	1160700000	552910000	607780000	759660000	424170000	335490000	904080000	450450000	453630000	40743000	22049000	18694000	75	1386	73	385;386;387;388;389;390;391;392;393;394	499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518;519;520;521;522;523;524;525	504			27	
AAALLMLTK	1	Unmodified	930.55722	0.55722409	669	O95273	CCNDBP1	Cyclin-D1-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	64.399	61.855	2	0.00013513	53141	160511_QHF_FH_JSI12i_3	90.657	73.271			0.96972	0.93498	18.895	5	1	Median	1.3709	1.1167	NaN	1	0	Median	0.96972	1.1027	NaN	1	0	Median	0.92167	0.85954	11.898	2	1	Median	0.72955	0.73713	NaN	1	0	Median	173210000	86232000	86975000	39576000	18376000	21201000	31836000	13818000	18018000	46090000	22497000	23593000	55705000	31542000	24163000	76	669	74	395;396;397;398;399	526;527;528;529;530;531;532	532			7	
AAALQPLPATHAALYHGMALALLSR	0	Unmodified	2556.3999	0.39988259	4501	Q9BWH6	RPAP1	RNA polymerase II-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.667	78.041	4	1.1423E-13	43432	160513_QHF_FH_JSI10Kac_6	99.614	89.356			0.76056	0.87662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76056	0.87662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109820000	60958000	48863000	0	0	0	109820000	60958000	48863000	0	0	0	0	0	0	77	4501	75	400	533	533			1	
AAALVLQTIWGYK	1	Unmodified	1432.8078	0.80783613	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	3	3	5	4	92.04	87.54	2;3	1.2229E-62	44357	160513_QHF_FH_JSI11Kac_6	222	192.52			0.91685	0.97766	47.541	14	6	Median	0.88164	0.74798	32.37	3	1	Plateau	0.7706	0.92467	10.711	3	1	Median	1.208	1.1382	83.88	4	2	Median	0.92127	0.97766	24.352	4	2	Median	2331700000	1193700000	1138000000	508160000	257650000	250500000	637950000	335710000	302240000	641830000	306800000	335040000	543760000	293580000	250180000	78	442	76	401;402;403;404;405;406;407;408;409;410;411;412;413;414;415	534;535;536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555	541			22	
AAAMANNLQK	1	Unmodified	1030.523	0.52296385	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	4	4					4			2	4	3	3	17.192	15.034	2	1.359E-06	12807	160511_QHF_FH_JSI12i_1	112.37	90.133			0.82738	0.74181	38.297	9	2	Median	0.84365	0.7076	8.8012	2	0	Median	0.49577	0.59009	1.0134	2	0	Median	0.75788	0.73823	26.813	2	0	Median	1.2606	1.428	42.731	3	2	Median	1306700000	760300000	546420000	287000000	159660000	127340000	384360000	249620000	134740000	282230000	177680000	104550000	353130000	173350000	179780000	79	2538	77	416;417;418;419;420;421;422;423;424;425;426;427	556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572	560			17	
AAAMANNLQK	1	Oxidation (M)	1046.5179	0.51787847	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	15.239	14.954	2	3.2379E-06	12343	160511_QHF_FH_JSI11i_1	122.74	93.593			1.9026	1.9503	71.356	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1956	1.1775	NaN	1	1	Median	3.0278	3.2301	NaN	1	1	Median	130740000	57066000	73671000	0	0	0	0	0	0	94424000	48598000	45826000	36313000	8468400	27845000	80	2538	77	428;429	573;574	573		2003	2	
AAAMDVDTPSGTNSGAGK	1	Acetyl (Protein N-term)	1690.7468	0.74682837	2031	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	6			3						2	2	2	3	45.367	42.462	2	1.7406E-38	38833	160511_QHF_FH_JSI12i_1	238.87	228.49			1.0417	1.1085	240.35	7	4	Median	0.78217	0.64562	356.62	2	2	Median	0.90783	1.1085	NaN	1	0	Median	1.092	1.0585	6.7177	2	0	Median	1.4357	1.4756	460.86	2	2	Median	1084600000	569700000	514900000	208810000	96489000	112320000	277950000	150620000	127330000	303150000	161770000	141380000	294680000	160820000	133860000	81	2031	78	430;431;432;433;434;435;436;437;438	575;576;577;578;579;580;581;582;583;584;585	576			11	
AAAMDVDTPSGTNSGAGK	1	Acetyl (Protein N-term);Oxidation (M)	1706.7417	0.74174299	2031	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	0	1	1	0	By MS/MS		By MS/MS	By MS/MS	8.5	4.33	1			3						1		1	2	34.987	26.428	2	2.7783E-24	37901	160511_QHF_FH_JSI9i_1	139.46	120.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	698000	698000	0	0	0	0	0	0	0	0	0	0	698000	698000	0	82	2031	78	439;440;441;442	586;587;588;589	586		1690	4	
AAAMDVDTPSGTNSGAGKK	2	Acetyl (Protein N-term)	1818.8418	0.84179138	2031	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	34.586	33.98	2;3	9.1551E-14	30739	160511_QHF_FH_JSI12i_1	107.57	97.104			0.95176	0.96567	44.111	8	1	Median	0.59254	0.491	79.883	2	1	Median	0.8328	0.9778	2.063	2	0	Median	0.96514	0.94905	2.752	2	0	Median	0.9988	1.0124	5.7691	2	0	Median	1151600000	590690000	560900000	217010000	101040000	115980000	312320000	157950000	154370000	324110000	169600000	154510000	298150000	162100000	136050000	83	2031	79	443;444;445;446;447;448;449;450;451	590;591;592;593;594;595;596;597;598;599;600;601;602;603;604	597			15	
AAAMTPPEEELK	1	Unmodified	1285.6224	0.62240312	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	38.88	38.382	2	0.000129	34827	160511_QHF_FH_JSI12i_1	101.66	66.22			1.1194	1.0925	10.957	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1194	1.067	NaN	1	0	Median	1.1254	1.1935	12.51	2	2	Median	115270000	50541000	64729000	0	0	0	0	0	0	39842000	15211000	24631000	75428000	35330000	40098000	84	2612	80	452;453;454;455	605;606;607;608	607			4	
AAAMVPGR	0	Acetyl (Protein N-term)	813.41671	0.41670786	345	O43598	DNPH1	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	36.922	36.212	1;2	0.0011488	31883	160511_QHF_FH_JSI9i_1	76.847	76.847			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	85	345	81	456;457;458;459;460;461	609;610;611;612;613;614	613			6	
AAAMVPGR	0	Acetyl (Protein N-term);Oxidation (M)	829.41162	0.41162248	345	O43598	DNPH1	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	yes	yes	0	1	1	0	By MS/MS				1	0	1									1				37.412	36.189	2	0.0071993	31810	160511_QHF_FH_JSI9i_1	54.787	43.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	86	345	81	462	615	615		134	1	
AAANEQLTR	0	Unmodified	972.49886	0.49885759	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.89	4	1				2	1			1	2	3	2	10.516	7.5206	2	2.6126E-08	6820	160511_QHF_FH_JSI11i_1	149.57	101.07			1.1745	1.0479	86.934	8	3	Median	1.2636	1.0454	NaN	1	0	Median	0.84709	1.0246	1.6197	2	0	Median	1.0917	1.0504	103.85	3	2	Plateau	2.112	2.2499	117.13	2	1	Median	2539400000	1186900000	1352500000	555920000	261760000	294160000	640190000	338240000	301950000	737310000	296590000	440720000	605990000	290320000	315670000	87	5098	82	463;464;465;466;467;468;469;470	616;617;618;619;620;621;622;623;624;625;626;627	617			12	
AAAPAPEEEMDECEQALAAEPK	1	Unmodified	2356.0199	0.019891683	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	62.247	61.64	2;3	2.4178E-18	55880	160511_QHF_FH_JSI11i_1	192.4	182.35			1.0579	1.1874	34.069	9	4	Median	1.6151	1.3178	46.911	2	1	Median	1.0176	1.204	29.802	3	2	Median	0.81611	0.79596	7.8083	2	1	Median	1.2511	1.3208	25.906	2	0	Median	1316400000	658230000	658120000	240050000	111240000	128810000	354310000	183340000	170960000	378500000	208890000	169620000	343490000	154760000	188740000	88	1284	83	471;472;473;474;475;476;477;478;479	628;629;630;631;632;633;634;635;636;637;638;639;640;641	628			14	
AAAPAPVSEAVCR	0	Unmodified	1297.6449	0.6448699	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.206	32.629	2	0.0017858	29366	160511_QHF_FH_JSI12i_1	60.434	43.408			1.4196	1.4553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4196	1.4553	NaN	1	0	Median	47257000	19948000	27309000	0	0	0	0	0	0	0	0	0	47257000	19948000	27309000	89	1181	84	480	642	642			1	
AAAPGVEDEPLLR	0	Unmodified	1336.6987	0.69867961	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.121	50.447	2	5.0476E-22	45556	160511_QHF_FH_JSI11i_1	172.88	134.11			0.71381	0.78555	20.243	4	0	Linear	1.4878	1.2402	NaN	1	0	Median	0.95185	1.1387	NaN	1	0	Median	0.82743	0.80253	NaN	1	0	Median	0.85131	0.89873	NaN	1	0	Median	956300000	491820000	464480000	212080000	82496000	129580000	223790000	107810000	115980000	272330000	167360000	104970000	248100000	134150000	113950000	90	1373	85	481;482;483;484	643;644;645;646;647;648;649;650	644			8	
AAAPQAPGR	0	Acetyl (Protein N-term)	879.45626	0.45626449	2085	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			17.94	17.687	2	0.0041114	15065	160511_QHF_FH_JSI10i_1	46.835	37.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	91	2085	86	485	651	651			1	
AAAQCYIDLIIK	1	Unmodified	1377.7326	0.73262227	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.8	85.809	2	0.0016311	74147	160511_QHF_FH_JSI12i_2	63.283	50.707			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	92	1804	87	486	652	652			1	
AAAQEADGAR	0	Unmodified	958.44682	0.44682202	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.8352	4.6085	2	0.00036209	2446	160511_QHF_FH_JSI11i_1	89.886	62.749			0.56458	0.58872	55.949	3	2	Median	NaN	NaN	NaN	0	0	Median	0.50416	0.58872	NaN	1	1	Median	1.6525	1.5419	NaN	1	1	Median	0.56458	0.58151	NaN	1	0	Median	152040000	76105000	75935000	0	0	0	47832000	28162000	19670000	49997000	21267000	28729000	54211000	26676000	27536000	93	751	88	487;488;489	653;654;655	653			3	
AAAQEADGAR	0	Acetyl (Protein N-term)	1000.4574	0.4573867	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	2	2	13.108	10.357	2	1.7043E-05	9161	160511_QHF_FH_JSI11i_1	103.55	98.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	94	751	88	490;491;492;493;494;495	656;657;658;659;660;661	656			6	
AAAQQLGEVVK	1	Unmodified	1112.619	0.61897272	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.642	32.066	2	8.1557E-06	28863	160511_QHF_FH_JSI12i_1	112.36	66.639			0.60209	0.63503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60209	0.63503	NaN	1	1	Median	90900000	61098000	29802000	0	0	0	0	0	0	0	0	0	90900000	61098000	29802000	95	232	89	496	662	662			1	
AAAQYYLGNFR	0	Unmodified	1272.6251	0.62512073	730	O95801	TTC4	Tetratricopeptide repeat protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	11.7	6.13			1						2	1	1		1	59.896	54.04	2	6.667E-07	29873	160513_QHF_FH_JSI10Kac_6	105.78	86.023			0.90637	1.0772	26.155	3	1	Median	0.90637	0.7636	NaN	1	0	Median	0.90361	1.0772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2264	1.2758	NaN	1	1	Median	75556000	38658000	36898000	7133600	3891700	3241900	30826000	17192000	13633000	0	0	0	37596000	17574000	20023000	96	730	90	497;498;499	663;664;665	665			3	
AAARPLLTDLYQATMALGYWR	0	Unmodified	2380.2362	0.23617131	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.311	88.247	3	2.5516E-16	52184	160513_QHF_FH_JSI10Kac_6	125.09	120.74			1.1525	1.1248	10.768	3	1	Median	1.2708	1.0653	NaN	1	0	Median	1.0973	1.3112	NaN	1	0	Median	1.1525	1.1248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	915140000	445170000	469970000	174910000	72759000	102150000	647290000	339240000	308040000	92945000	33168000	59777000	0	0	0	97	3167	91	500;501;502	666;667;668;669;670	670			5	
AAARPSLGR	0	Acetyl (Protein N-term)	939.52501	0.52501276	3964	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	1	0	1	By MS/MS				3	0			1							1				19.423	18.221	2	0.0066579	14585	160511_QHF_FH_JSI9i_3	58.815	39.029			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	98	3964	92	503	671	671			1	
AAASGSVLQR	0	Acetyl (Protein N-term)	1000.5302	0.53015772	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	6.25	5.26	2			1	1					1		2	1	36.58	31.672	2	0.0010502	28083	160511_QHF_FH_JSI9i_1	85.161	67.097			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	99	2996	93	504;505;506;507	672;673;674;675	674			4	
AAASHKVK	2	Acetyl (K)	852.48175	0.48175096	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4		3	2	1	4.955	-3.6162	2;3	1.5001E-06	1460	160513_QHF_FH_JSI11Kac_6	136.75	93.884			0.63556	0.72885	204.06	6	2	Median	NaN	NaN	NaN	0	0	Median	2.7467	3.2242	174.45	3	2	Median	0.20866	0.20239	5.8776	2	0	Median	0.35258	0.38602	NaN	1	0	Median	184040000	141620000	42419000	0	0	0	17498000	3999400	13498000	161230000	133730000	27500000	5306500	3885400	1421100	100	1345	94	508;509;510;511;512;513	676;677;678;679;680;681;682	678	1278		7	
AAASKLEQGK	2	Acetyl (K)	1043.5611	0.56112349	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	22.796	15.449	2	0.001411	10006	160513_QHF_FH_JSI11Kac_3	85.355	54.791			0.93758	1.0331	11.616	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81645	0.97119	NaN	1	0	Median	1.2313	1.2161	NaN	1	0	Median	0.93758	1.0331	NaN	1	0	Median	55364000	25923000	29441000	0	0	0	15147000	7925300	7221800	12869000	5710800	7158000	27348000	12287000	15061000	101	1432	95	514;515;516	683;684;685;686;687;688	684	1392		6	
AAASKLGEFAK	2	Acetyl (K)	1133.6081	0.60807369	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.471							2	1			1	1	1	56.978	46.273	2	0.00065711	26044	160513_QHF_FH_JSI12Kac_4	87.568	70.182			0.90988	1.0225	47.63	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.59747	0.69666	NaN	1	0	Median	0.40604	0.39943	NaN	1	0	Median	0.96123	1.0306	NaN	1	0	Median	32209000	20306000	11903000	0	0	0	10184000	6363200	3821000	4315700	3254700	1061000	17709000	10688000	7020700	102	1345;1346	96	517;518;519	689;690	690	1279		1	
AAASLAAVSGTAAASLGSAQPTDLGAHK	1	Unmodified	2493.2823	0.28232946	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							1	4	4	3	70.055	69.594	3;4	4.1616E-32	62079	160511_QHF_FH_JSI11i_3	147.11	139.49			1.0079	0.99403	18.213	11	0	Median	1.3741	1.1604	NaN	1	0	Median	0.95986	1.1468	24.964	3	0	Plateau	1.011	0.95228	8.6368	4	0	Median	0.95896	0.97509	24.524	3	0	Plateau	926280000	475210000	451070000	53753000	28073000	25680000	145260000	77281000	67976000	316600000	165400000	151200000	410680000	204460000	206210000	103	3283	97	520;521;522;523;524;525;526;527;528;529;530;531	691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706	692			16	
AAASLSQPEEEQK	1	Unmodified	1386.6627	0.66268803	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	17.681	17.387	2	1.2539E-30	14941	160511_QHF_FH_JSI12i_1	160.36	96.059			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	104	5447	98	532;533	707;708	708			2	
AAASTDYYK	1	Unmodified	988.45018	0.45017606	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.208	13.367	2	0.00042813	10945	160511_QHF_FH_JSI9i_1	90.657	79.783			4.2206	3.8191	46.127	5	5	Linear	3.5107	2.774	NaN	1	1	Median	4.0328	4.7223	NaN	1	1	Median	2.5096	2.449	62.837	2	2	Median	4.3513	4.6702	NaN	1	1	Median	5665200000	1102400000	4562800000	1128400000	213660000	914740000	1543600000	303040000	1240600000	1193100000	245220000	947870000	1800100000	340510000	1459500000	105	903	99	534;535;536;537;538	709;710;711;712;713	713			5	
AAATAEEPDPK	1	Unmodified	1098.5193	0.51931826	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	5.58	8			1	5	2				2	4	5	5	12.827	9.2494	2;3	3.2849E-19	8333	160511_QHF_FH_JSI10i_1	168.83	134.02			0.90604	0.92184	17.901	15	0	Median	1.0679	0.86923	5.0823	2	0	Median	0.91242	1.0852	14.96	4	0	Median	0.89095	0.85323	26.224	4	0	Median	0.86995	0.92184	10.324	5	0	Median	3177100000	1555100000	1622000000	793240000	395070000	398170000	709740000	338060000	371680000	758960000	343030000	415920000	915150000	478900000	436250000	106	4309	100	539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554	714;715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734	724			19	
AAATGAVAASAASGQAEGK	1	Acetyl (Protein N-term)	1629.7958	0.79582747	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						2	1	2	2	48.359	43.307	2	1.6113E-95	38684	160511_QHF_FH_JSI9i_1	224.42	206.11			0.83605	0.87849	27.805	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68744	0.75208	NaN	1	0	Median	1.331	1.2907	NaN	1	0	Median	0.83605	0.87849	NaN	1	0	Median	329940000	133160000	196780000	57289000	57289000	0	2141100	1283000	858110	112580000	985350	111590000	157930000	73603000	84327000	107	5066	101	555;556;557;558;559;560;561	735;736;737;738;739;740;741;742;743	739			9	
AAATGDPGLSK	1	Acetyl (Protein N-term)	1028.5138	0.51383895	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				28.35	27.083	2	0.0078814	23535	160511_QHF_FH_JSI9i_1	42.395	28.816			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	108	680	102	562	744	744			1	
AAATGLPEGPAVPVPSR	0	Unmodified	1588.8573	0.85730551	3507	Q8N1S5	SLC39A11	Zinc transporter ZIP11	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		58.253	57.831	2	0.00064519	52449	160511_QHF_FH_JSI11i_1	64.65	47.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	109	3507	103	563	745	745			1	
AAATGPSFWLGNETLK	1	Acetyl (Protein N-term)	1703.8519	0.85188578	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	97.82	97.611	2	7.4895E-23	88489	160511_QHF_FH_JSI12i_1	103.75	95.022			1.1087	1.2379	144.66	6	4	Median	0.77869	0.64653	236.42	2	2	Median	1.0169	1.216	NaN	1	0	Median	0.73364	0.70606	209.2	2	2	Median	1.2089	1.2602	NaN	1	0	Median	289370000	137910000	151460000	62496000	30928000	31568000	77403000	33628000	43775000	73999000	41022000	32977000	75473000	32337000	43136000	110	1022	104	564;565;566;567;568;569	746;747;748;749;750;751;752;753	749			8	
AAATLTSK	1	Unmodified	761.42832	0.42831841	5266	Q9UDW1	UQCR10	Cytochrome b-c1 complex subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.86	4	2				3	1			1	4	3	2	9.701	6.2265	2	0.00043207	6177	160511_QHF_FH_JSI10i_1	108.46	77.171			0.92347	0.91897	27.84	9	1	Median	1.2085	0.99049	NaN	1	0	Median	1.0191	1.2072	22.116	3	1	Median	0.92909	0.9029	2.2711	3	0	Plateau	0.65353	0.69834	28.558	2	0	Median	3137900000	1730100000	1407900000	593800000	313190000	280610000	937650000	519180000	418480000	890520000	459880000	430640000	715940000	437810000	278130000	111	5266	105	570;571;572;573;574;575;576;577;578;579	754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772	760			19	
AAATPAK	1	Unmodified	628.35443	0.35442518	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.83	4	3				2				2	2	3	2	4.5599	3.3634	2	0.0014181	1339	160513_QHF_FH_JSI12Kac_3	92.692	92.692			1.2473	1.2854	33.182	8	0	Median	1.2332	1.0413	9.2357	2	0	Median	1.2568	1.518	2.9768	2	0	Median	1.6101	1.57	53.845	3	0	Plateau	0.99488	1.0359	NaN	1	0	Median	16526000000	8633600000	7892700000	2159100000	1020700000	1138400000	5212500000	2580000000	2632500000	3695500000	2127700000	1567800000	5459200000	2905200000	2554000000	112	1154	106	580;581;582;583;584;585;586;587;588	773;774;775;776;777;778;779;780;781;782;783	783			11	
AAATPESQEPQAK	1	Unmodified	1326.6416	0.64155866	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.87	5.21	8			4	3					2	5	4	4	12.779	9.4059	2;3	8.7393E-53	8050	160511_QHF_FH_JSI9i_1	215.87	194.35			0.94694	0.96582	14.412	14	2	Median	1.1937	0.98775	0.45878	2	0	Median	0.80732	0.93291	24.74	4	2	Median	0.8762	0.85351	10.618	4	0	Linear	0.83939	0.86881	10.361	4	0	Linear	2989500000	1497100000	1492400000	768390000	336180000	432210000	715940000	391740000	324200000	741940000	388460000	353480000	763210000	380740000	382470000	113	1639	107	589;590;591;592;593;594;595;596;597;598;599;600;601;602;603	784;785;786;787;788;789;790;791;792;793;794;795;796;797;798;799;800;801;802;803	796			18	
AAATQPAK	1	Unmodified	756.413	0.41300269	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	4.7625	4.4485	2	0.014498	2344	160511_QHF_FH_JSI12i_1	51.335	0.7037			0.88092	0.88269	26.146	4	0	Median	0.80102	0.65605	NaN	1	0	Median	1.0625	1.2294	NaN	1	0	Median	0.96511	0.93863	NaN	1	0	Median	0.80407	0.83008	NaN	1	0	Median	522610000	264760000	257850000	84350000	43638000	40713000	121010000	61405000	59602000	146360000	64967000	81395000	170890000	94752000	76142000	114	5332	108	604;605;606;607	804;805	804			2	
AAATQPDAK	1	Unmodified	871.43995	0.43994572	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	5.5	4			1	3	2				1	3	3	3	5.5255	1.372	2	5.0685E-08	2991	160511_QHF_FH_JSI12i_1	144.09	121.07			0.86224	0.93818	16.289	9	1	Median	1.5206	1.2424	NaN	1	0	Median	0.83424	0.98843	20.84	3	0	Plateau	0.99143	0.95529	5.4153	2	0	Median	0.86224	0.93518	7.9694	3	1	Median	2926900000	1460500000	1466400000	605410000	229060000	376350000	766470000	416680000	349790000	788390000	425220000	363180000	766650000	389570000	377080000	115	3213	109	608;609;610;611;612;613;614;615;616;617	806;807;808;809;810;811;812;813;814;815;816;817	809			12	
AAATSAKK	2	Acetyl (K)	788.43922	0.43921744	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	5.4978	-1.7668	2	0.033303	1878	160513_QHF_FH_JSI11Kac_3	84.368	39.601			0.74148	0.81661	39.354	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0142	1.206	NaN	1	0	Median	0.55904	0.54897	NaN	1	0	Median	0.74148	0.81661	NaN	1	0	Median	61334000	36886000	24448000	0	0	0	14899000	7561700	7337700	17702000	11948000	5754000	28732000	17376000	11356000	116	1154	110	618;619;620	818;819;820;821	819			4	
AAAVAAAGAGEPQSPDELLPK	1	Acetyl (Protein N-term)	2004.0164	0.016384931	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	83.911	83.448	2;3	1.2283E-46	74276	160511_QHF_FH_JSI9i_1	136.17	115.96			1.1595	1.1415	7.1374	8	0	Median	1.324	1.082	10.928	2	0	Median	0.97685	1.1415	3.2018	2	0	Median	1.1663	1.1423	9.4965	2	0	Median	1.1595	1.1737	8.1874	2	0	Median	1727000000	857770000	869200000	385830000	182490000	203340000	502720000	278270000	224450000	528210000	253850000	274360000	310210000	143150000	167060000	117	4978	111	621;622;623;624;625;626;627;628;629	822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838	836			17	
AAAVAMETDDAGNRLR	0	Acetyl (Protein N-term)	1701.8104	0.81043168	5582	Q9Y3C7	MED31	Mediator of RNA polymerase II transcription subunit 31	yes	yes	0	1	0	1			By MS/MS		1.5	0.5	1	1										2		56.118	55.657	2	9.0068E-05	48140	160511_QHF_FH_JSI11i_2	83.862	69.171			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	118	5582	112	630;631	839;840	840			2	
AAAVAVAAASR	0	Acetyl (Protein N-term)	998.55089	0.55089316	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	9	4.64	1			1	2						2	1	1	53.851	53.186	2	2.6833E-06	48239	160511_QHF_FH_JSI12i_1	111.06	79.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	119	3283	113	632;633;634;635	841;842;843;844	842			4	
AAAVGTANK	1	Unmodified	801.43447	0.43446642	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	5.41	4		3		3	4				1	4	4	5	5.7149	2.2431	2	2.1372E-11	3159	160511_QHF_FH_JSI10i_1	161.68	94.688			0.943	1.0034	25.638	13	3	Median	1.1289	0.93063	NaN	1	0	Median	0.84797	0.9971	12.62	4	0	Median	1.0634	1.049	29.659	4	1	Median	1.0029	1.0772	37.888	4	2	Median	7578100000	3852800000	3725400000	1528900000	637370000	891550000	2252800000	1243000000	1009800000	1966600000	1046000000	920610000	1829800000	926400000	903400000	120	1139	114	636;637;638;639;640;641;642;643;644;645;646;647;648;649	845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860	852			16	
AAAVLPVLDLAQR	0	Unmodified	1335.7874	0.78743503	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	3	2	86.165	85.576	2;3	2.3696E-05	75239	160511_QHF_FH_JSI11i_2	76.655	73.706			1.0006	1.027	11.348	10	0	Median	1.3308	1.1398	20.721	2	0	Median	0.79131	0.95967	10.407	3	0	Median	0.96522	0.94754	7.1894	3	0	Plateau	0.97393	1.0728	5.8078	2	0	Median	487490000	253340000	234150000	73346000	33585000	39761000	118000000	66778000	51227000	196980000	100510000	96466000	99161000	52461000	46700000	121	1158	115	650;651;652;653;654;655;656;657;658;659	861;862;863;864;865;866;867;868;869;870;871;872;873;874;875	871			15	
AAAVLSGPSAGSAAGVPGGTGGLSAVSSGPR	0	Acetyl (Protein N-term)	2607.3253	0.3252569	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	84.434	83.868	3	1.0865E-08	76298	160511_QHF_FH_JSI12i_1	64.152	56.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	122	3483	116	660;661;662	876;877;878	877			3	
AAAVPQR	0	Acetyl (Protein N-term)	753.41334	0.41333704	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.26	4			2	2					1	3	1	3	18.047	17.766	2	0.003884	15030	160511_QHF_FH_JSI11i_1	69.39	51.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	123	2158	117	663;664;665;666;667;668;669;670	879;880;881;882;883;884;885;886	879			8	
AAAVPVEFQEHHLSEVQNMASEEK	1	Oxidation (M)	2695.2548	0.25479408	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	50.627	50.509	4	0.00033456	44643	160511_QHF_FH_JSI11i_3	42.612	35.419			1.0569	1.0352	18.828	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2272	1.1827	NaN	1	0	Median	0.91032	0.9062	NaN	1	0	Median	125140000	64213000	60928000	0	0	0	0	0	0	64450000	33770000	30680000	60692000	30443000	30249000	124	386	118	671;672	887;888	887		152	2	
AAAVPVEFQEHHLSEVQNMASEEK	1	Unmodified	2679.2599	0.25987945	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	5	2	61.083	60.562	3;4	2.5041E-28	53633	160511_QHF_FH_JSI11i_3	157.12	150.24			0.92801	0.93797	6.533	10	1	Median	1.0939	0.9447	3.9653	2	0	Median	0.75512	0.93127	4.6816	2	0	Median	1.0873	1.0073	8.2654	4	1	Linear	0.86662	0.89117	10.192	2	0	Median	2191300000	1106300000	1085000000	179030000	76654000	102370000	354390000	207340000	147050000	1114900000	563740000	551120000	543000000	258590000	284410000	125	386	118	673;674;675;676;677;678;679;680;681;682;683	889;890;891;892;893;894;895;896;897;898;899;900	891			12	
AAAVSSVVR	0	Acetyl (Protein N-term)	900.50288	0.50288033	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.385	49.708	2	4.4498E-05	44074	160511_QHF_FH_JSI9i_1	106.04	90.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	126	24	119	684;685;686;687	901;902;903;904	904			4	
AAAVVGINSETIMK	1	Unmodified	1402.749	0.74900062	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	57.941	57.197	2	2.8129E-07	49075	160511_QHF_FH_JSI12i_2	91.937	74.501			1.0484	0.98623	29.111	6	5	Median	1.1427	0.93976	NaN	1	1	Median	0.70505	0.82963	NaN	1	1	Median	0.83549	0.82972	31.264	2	2	Median	1.2208	1.3113	26.778	2	1	Median	401870000	206930000	194940000	25921000	12879000	13042000	119980000	72622000	47359000	125030000	60466000	64559000	130940000	60961000	69981000	127	1047	120	688;689;690;691;692;693;694;695	905;906;907;908;909;910;911;912	907			8	
AAAYLDPNLNHTPNSSTK	1	Acetyl (Protein N-term)	1954.9385	0.93846896	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	58.681	58.023	2	0.00026586	52759	160511_QHF_FH_JSI12i_1	67.456	61.224			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17119000	0	17119000	0	0	0	0	0	0	0	0	0	17119000	0	17119000	128	2229	121	696	913	913			1	
AAAYSAQVQPVDGATR	0	Unmodified	1603.7954	0.79543354	4768	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				1	2	2	4	36.365	32.198	2	3.4971E-137	28656	160511_QHF_FH_JSI10i_1	290.66	264.14			0.93948	0.97957	8.2483	7	1	Median	1.1818	0.95537	NaN	1	0	Median	0.81371	0.94689	15.525	2	1	Median	1.0091	0.98382	11.948	2	0	Median	0.93128	0.98628	0.96457	2	0	Median	782680000	414310000	368370000	180340000	95484000	84861000	193410000	104020000	89391000	234600000	116940000	117660000	174330000	97872000	76456000	129	4768	122	697;698;699;700;701;702;703;704;705	914;915;916;917;918;919;920;921;922;923;924;925;926	921			13	
AACCLAGAR	0	Unmodified	948.42695	0.42695497	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.2		3					1				1	2	1	12.365	10.106	2	0.0054693	8212	160511_QHF_FH_JSI11i_2	55.676	34.376			1.2459	1.3772	49.347	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2518	1.5301	NaN	1	1	Median	0.8508	0.85043	53.283	2	0	Median	1.5525	1.7704	NaN	1	0	Median	132670000	50015000	82656000	0	0	0	27228000	12407000	14821000	70281000	25865000	44416000	35161000	11743000	23418000	130	677	123	706;707;708;709	927;928;929;930	929			4	
AACHLKLEDYDK	2	Acetyl (K)	1503.7028	0.70277871	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15	0								4			1	2	1	47.844	37.541	2;3	0.010555	21060	160513_QHF_FH_JSI11Kac_5	59.116	53.939			0.80704	0.95859	42.221	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80704	0.95859	NaN	1	0	Median	0.55613	0.5449	NaN	1	0	Median	1.1311	1.2446	NaN	1	0	Median	23137000	13699000	9438700	0	0	0	4634500	3070600	1563900	12680000	8128700	4551000	5823200	2499400	3323800	131	4704	124	710;711;712;713	931;932	932	3220		1	
AACNLLQR	0	Unmodified	944.48618	0.48618441	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	24.017	23.429	2	0.00019177	19895	160511_QHF_FH_JSI11i_3	121.29	81.75			0.94266	0.97979	17.875	6	1	Median	1.1533	0.9799	NaN	1	0	Median	0.89569	1.0722	12.757	2	1	Median	0.78465	0.77774	10.728	2	0	Median	1.1083	1.101	NaN	1	0	Median	643340000	327800000	315540000	51791000	25475000	26316000	157430000	81525000	75900000	280010000	153590000	126420000	154120000	67211000	86907000	132	2176	125	714;715;716;717;718;719	933;934;935;936;937;938	934			6	
AADAEAEVASLNR	0	Unmodified	1315.6368	0.63680763	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	33.632	29.518	2	3.5612E-05	26156	160511_QHF_FH_JSI10i_1	116.55	77.77			0.85449	0.81509	16.236	7	0	Median	0.85449	0.70485	NaN	1	0	Median	0.6676	0.77775	6.6308	2	0	Median	0.91416	0.89428	8.0124	2	0	Median	0.86095	0.92576	27.928	2	0	Median	1463700000	804120000	659580000	319140000	170900000	148240000	317670000	182370000	135300000	376190000	185110000	191080000	450700000	265740000	184960000	133	858	126	720;721;722;723;724;725;726	939;940;941;942;943;944;945;946	943			8	
AADAEAEVASLNRR	0	Unmodified	1471.7379	0.73791866	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	5.47		8	6				1	4		4	4	5	6	27.578	24.588	2;3	1.7006E-05	13952	160513_QHF_FH_JSI9Kac_5	97.69	71.572			0.9914	1.0113	17.097	19	1	Median	1.109	0.93853	14.574	4	1	Median	0.74892	0.90135	13.379	4	0	Median	1.0836	1.0675	19.452	5	0	Median	0.99774	1.0688	17.845	6	0	Median	3923600000	2051300000	1872400000	886090000	430490000	455600000	1128400000	629980000	498380000	1446500000	750510000	696030000	462630000	240280000	222350000	134	858	127	727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745	947;948;949;950;951;952;953;954;955;956;957;958;959;960;961;962;963;964;965;966;967;968;969;970	953			24	
AADALEEQQR	0	Unmodified	1129.5364	0.53636531	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	3	2	2	13.306	11.256	2	6.862E-11	9265	160511_QHF_FH_JSI9i_1	144.77	108.39			0.97437	0.96842	17.181	8	6	Median	1.11	0.90375	NaN	1	0	Median	0.8133	0.9695	19.927	3	3	Plateau	0.97023	0.95709	11.439	2	2	Median	1.001	1.0553	28.703	2	1	Median	1073800000	574140000	499620000	173070000	85098000	87967000	370720000	212470000	158250000	356480000	190550000	165940000	173490000	86029000	87463000	135	2587	128	746;747;748;749;750;751;752;753	971;972;973;974;975;976;977;978;979;980	978			10	
AADAVEDLR	0	Unmodified	958.47197	0.47197413	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	27.679	23.271	2	3.6513E-06	20383	160511_QHF_FH_JSI11i_1	122.13	61.545			1.2274	1.1972	74.932	6	1	Median	NaN	NaN	NaN	0	0	Median	0.48064	0.57149	141.07	2	0	Median	1.2294	1.1972	10.767	2	0	Median	1.1426	1.2226	23.54	2	1	Median	591650000	325920000	265730000	0	0	0	133450000	109180000	24267000	219060000	96522000	122540000	239150000	120220000	118930000	136	5435	129	754;755;756;757;758;759	981;982;983;984;985;986;987	982			6	
AADAVNK	1	Unmodified	687.35515	0.35515346	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		3.355	3.2583	2	0.013952	1520	160511_QHF_FH_JSI11i_1	66.993	30.808			1.093	1.0551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.093	1.0551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80214000	31655000	48559000	0	0	0	0	0	0	80214000	31655000	48559000	0	0	0	137	444	130	760	988	988			1	
AADEALNAMTSNGSHR	0	Unmodified	1643.7322	0.73218135	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		4								2	2			27.532	26.535	3	0.0010668	23146	160511_QHF_FH_JSI10i_2	57.973	53.871			0.95991	1.1655	45.366	3	3	Median	0.98944	0.86138	59.217	2	2	Median	0.95991	1.1655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49258000	24029000	25229000	26240000	13522000	12718000	23018000	10507000	12511000	0	0	0	0	0	0	138	2446	131	761;762;763;764	989;990;991;992;993	991			5	
AADEAMEER	0	Unmodified	1020.4182	0.418224	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	9.3213	8.9557	2	0.00025167	6893	160511_QHF_FH_JSI12i_1	84.213	51.372			0.98247	1.0358	10.478	4	0	Median	1.3709	1.1347	NaN	1	0	Median	0.95453	1.1072	NaN	1	0	Median	1.0112	0.96898	NaN	1	0	Median	0.89	0.91252	NaN	1	0	Median	532600000	266180000	266420000	113880000	48632000	65243000	150790000	84804000	65988000	150700000	72480000	78216000	117240000	60264000	56976000	139	5108	132	765;766;767;768	994	994			1	
AADEEAFEDNSEEYIR	0	Unmodified	1886.7806	0.78063091	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.472	51.804	2	2.6263E-65	46863	160511_QHF_FH_JSI11i_1	229.56	221.04			0.92065	0.93698	4.7611	4	0	Median	1.1699	0.97291	NaN	1	0	Median	0.74604	0.87243	NaN	1	0	Median	0.96447	0.95299	NaN	1	0	Median	0.87883	0.92123	NaN	1	0	Median	454840000	235990000	218850000	98078000	44097000	53980000	160860000	95053000	65803000	101740000	44861000	56879000	94170000	51981000	42189000	140	1844	133	769;770;771;772	995;996;997;998;999;1000;1001;1002	996			8	
AADEEAFEDNSEEYIRR	0	Unmodified	2042.8817	0.88174194	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.596	6	8	1							4	4	3	4	46.074	45.281	2;3	6.1472E-41	39002	160511_QHF_FH_JSI11i_2	203.04	198.04			1.0399	1.0698	21.039	14	3	Median	1.2953	1.0895	6.6019	3	1	Plateau	0.80078	0.96198	12.144	4	1	Median	1.0781	1.0493	38.003	3	1	Plateau	1.0399	1.1116	16.775	4	0	Median	4196400000	2108900000	2087600000	536130000	226980000	309150000	1148600000	621200000	527420000	1252900000	647540000	605330000	1258800000	613160000	645640000	141	1844	134	773;774;775;776;777;778;779;780;781;782;783;784;785;786;787	1003;1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020	1017			18	
AADESERGMK	1	Unmodified	1092.487	0.48697227	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1				By MS/MS	2	0		1											1	5.4131	4.8419	3	3.3493E-05	2840	160511_QHF_FH_JSI12i_2	74.841	51.936		+	0.32326	0.36222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32326	0.36222	NaN	1	0	Median	96005000	67592000	28413000	0	0	0	0	0	0	0	0	0	96005000	67592000	28413000	142	858;73;886;929;2069	135	788	1021	1021			1	
AADEVAEGK	1	Unmodified	888.41888	0.41887593	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	5.42	4	4			2	3				2	4	4	3	7.8224	4.5945	2	2.2792E-07	3127	160513_QHF_FH_JSI12Kac_3	141.2	69.057			0.98233	1.0141	26.722	12	2	Median	1.24	1.0566	2.9985	2	1	Median	0.94868	1.1331	37.087	4	1	Median	0.99601	0.99086	10.436	4	0	Median	0.75591	0.82056	27.127	2	0	Median	8202200000	4493500000	3708600000	2039900000	939550000	1100400000	2426000000	1436500000	989500000	1997100000	1099100000	897990000	1739100000	1018400000	720760000	143	887	136	789;790;791;792;793;794;795;796;797;798;799;800;801	1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033;1034;1035;1036;1037;1038;1039	1036			18	
AADFIDQALAQK	1	Unmodified	1289.6616	0.66156582	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.488	65.887	2	5.9307E-11	58581	160511_QHF_FH_JSI9i_1	149.33	120.93			1.0828	0.97444	8.1459	4	0	Linear	1.2965	1.0836	NaN	1	0	Median	0.95099	1.1227	NaN	1	0	Median	1.0216	0.99325	NaN	1	0	Median	1.1476	1.2085	NaN	1	0	Median	597950000	300080000	297870000	145440000	66085000	79353000	143620000	71545000	72073000	168750000	86248000	82506000	140140000	76198000	63939000	144	1734	137	802;803;804;805	1040;1041;1042;1043;1044;1045;1046	1046			7	
AADFIEELSSLFK	1	Unmodified	1468.745	0.7449611	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.9	102.78	2	1.5955E-53	88687	160511_QHF_FH_JSI12i_2	223.78	198.4			0.90406	1.0321	21.554	3	0	Plateau	0.78461	0.68046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0253	1.041	NaN	1	0	Median	0.79712	0.89524	NaN	1	0	Median	270650000	147250000	123400000	48901000	26367000	22534000	0	0	0	127090000	65080000	62013000	94657000	55804000	38853000	145	3306	138	806;807;808;809	1047;1048;1049;1050	1047			4	
AADFQLHTHVNDGTEFGGSIYQK	1	Unmodified	2534.1826	0.18261541	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	58.943	58.663	3;4	1.5354E-38	50354	160511_QHF_FH_JSI12i_3	192.47	184.67			0.94205	0.97996	18.254	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78736	0.97741	NaN	1	0	Median	1.4375	1.3475	9.0217	2	0	Median	0.93982	0.97488	0.73524	2	0	Median	1036500000	473210000	563340000	0	0	0	30514000	16225000	14288000	283650000	107890000	175760000	722380000	349090000	373290000	146	5499	139	810;811;812;813;814	1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061;1062;1063;1064;1065;1066;1067;1068	1062			18	
AADHLKPFLDDSTLR	1	Unmodified	1697.8737	0.87368386	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	51.364	51.246	4	2.8733E-05	45305	160511_QHF_FH_JSI11i_3	81.703	44.933			1.0645	1.041	13.315	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2335	1.1438	NaN	1	0	Median	0.91868	0.94748	NaN	1	0	Median	185980000	96846000	89131000	0	0	0	0	0	0	68494000	32024000	36470000	117480000	64822000	52661000	147	327	140	815;816	1069;1070;1071	1069			3	
AADHLKPFLDDSTLR	1	Acetyl (K)	1739.8842	0.88424855	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.792	64.095	3	0.0064864	34143	160513_QHF_FH_JSI11Kac_5	45.434	17.137			0.35651	0.35143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35651	0.35143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4346900	3425900	921060	0	0	0	0	0	0	4346900	3425900	921060	0	0	0	148	327	140	817	1072	1072	169		1	
AADIDQEVK	1	Unmodified	987.48729	0.48728985	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	22.056	17.474	2	4.7543E-06	14731	160511_QHF_FH_JSI9i_1	118.18	78.176			0.97883	1.0523	9.5947	10	0	Median	1.2553	1.0288	NaN	1	0	Median	0.77322	0.91378	7.0043	3	0	Plateau	1.2586	1.2065	6.2588	3	0	Plateau	0.98953	1.0542	7.9733	3	0	Plateau	3365800000	1792500000	1573300000	827010000	367160000	459850000	834740000	511820000	322920000	1001200000	592680000	408470000	702870000	320820000	382050000	149	3343	141	818;819;820;821;822;823;824;825;826;827	1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087	1082			15	
AADIIDGLRK	1	Unmodified	1070.6084	0.60840804	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	40.185	39.489	3	1.9423E-05	34953	160511_QHF_FH_JSI10i_2	76.143	42.765			0.98869	0.98495	12.306	6	0	Median	1.3819	1.2053	NaN	1	0	Median	0.76554	0.90067	8.8607	2	0	Median	1.1014	1.0549	6.669	2	0	Median	0.96354	0.96403	NaN	1	0	Median	410650000	199090000	211560000	28334000	14217000	14116000	79741000	40769000	38972000	143330000	68553000	74775000	159250000	75550000	83699000	150	4247	142	828;829;830;831;832;833	1088;1089;1090;1091;1092;1093;1094;1095;1096;1097	1095			10	
AADISESSGADCK	1	Acetyl (Protein N-term)	1351.5562	0.55617405	343	O43583	DENR	Density-regulated protein	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		27.52	27.314	2	0.00024066	24187	160511_QHF_FH_JSI10i_1	66.663	56.432			0.35277	0.3396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35277	0.3396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19992000	15245000	4746500	0	0	0	0	0	0	19992000	15245000	4746500	0	0	0	151	343	143	834;835	1098;1099	1099			2	
AADISLDNLVEGK	1	Unmodified	1343.6933	0.69325988	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1	0	3									1		1	1	71.007	70.375	2	0.005124	64128	160511_QHF_FH_JSI12i_1	84.169	59.293			0.65312	0.67153	9.5895	3	0	Plateau	0.79351	0.67153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65312	0.63431	NaN	1	0	Median	0.73346	0.76482	NaN	1	0	Median	134480000	77765000	56712000	36677000	19640000	17037000	0	0	0	59338000	37630000	21707000	38463000	20495000	17968000	152	2320	144	836;837;838	1100	1100			0	
AADKLAPAQYIR	1	Acetyl (K)	1357.7354	0.73539946	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	66.786	56.086	2	0.0029105	30757	160513_QHF_FH_JSI12Kac_4	72.006	54.57			0.84549	0.9453	2.1002	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81714	0.95944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87482	0.93137	NaN	1	0	Median	11405000	6070000	5334900	0	0	0	6082900	3239000	2843900	0	0	0	5322000	2831000	2491000	153	2443	145	839;840	1101;1102;1103;1104	1104	2481		4	
AADKPADQGAEK	2	Acetyl (Protein N-term)	1241.5888	0.58879481	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	8.4478	8.21	2	0.0011418	6057	160511_QHF_FH_JSI10i_1	54.066	38.404			0.78025	0.8508	19.093	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63787	0.74335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95442	0.97379	NaN	1	0	Median	151400000	66095000	85306000	0	0	0	68825000	36551000	32274000	26044000	0	26044000	56532000	29544000	26988000	154	4802	146	841;842;843	1105;1106	1106			1	
AADLLVNPLDPR	0	Unmodified	1292.7089	0.70885036	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	74.707	74.362	2	0.00034071	67783	160511_QHF_FH_JSI12i_1	73.951	55.64			0.71207	0.71933	19.493	4	4	Median	NaN	NaN	NaN	0	0	Median	0.77812	0.88394	NaN	1	1	Median	0.75057	0.71933	21.188	2	2	Median	0.59905	0.61021	NaN	1	1	Median	99528000	53416000	46112000	0	0	0	23971000	13230000	10741000	51117000	26801000	24316000	24439000	13384000	11055000	155	2089	147	844;845;846;847;848	1107;1108;1109;1110;1111	1110			5	
AADLNGDLTATR	0	Unmodified	1216.6048	0.60477922	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	35.605	31.451	2	9.2718E-11	28168	160511_QHF_FH_JSI11i_1	145.91	113.59			0.94865	0.89744	11.971	7	1	Median	0.95071	0.76933	NaN	1	0	Median	0.68812	0.80648	2.0607	2	1	Median	0.93091	0.90647	1.4162	2	0	Median	0.94943	1.0309	2.9178	2	0	Median	3731100000	2143000000	1588100000	896720000	448540000	448180000	1118600000	665440000	453190000	998960000	597030000	401940000	716740000	431960000	284780000	156	2652	148	849;850;851;852;853;854;855;856	1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122;1123;1124;1125	1113			14	
AADLNGDLTATREEFTAFLHPEEFEHMK	1	Oxidation (M)	3234.4928	0.49279252	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			5									3	2	98.66	98.668	5	3.2694E-18	85239	160511_QHF_FH_JSI12i_3	107.75	105.58			1.1797	1.1071	22.123	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4265	1.3295	18.86	3	1	Median	0.95988	0.9732	7.1105	2	0	Median	408920000	184750000	224170000	0	0	0	0	0	0	228170000	96346000	131820000	180750000	88403000	92346000	157	2652	149	857;858;859;860;861	1126;1127;1128;1129	1129		2069	4	
AADLNGDLTATREEFTAFLHPEEFEHMK	1	Unmodified	3218.4979	0.49787789	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							1	2	5	4	100.91	100.87	3;4;5	1.2703E-69	89868	160511_QHF_FH_JSI11i_3	211.92	201.5			0.98358	0.99536	13.165	12	4	Median	1.1622	0.97572	NaN	1	0	Median	0.7963	0.96822	10.755	2	0	Median	1.1596	1.1025	10.229	5	2	Median	0.8601	0.86004	10.226	4	2	Median	8562600000	4314000000	4248600000	219190000	106650000	112540000	1025000000	587040000	437990000	3799000000	1750300000	2048700000	3519400000	1870000000	1649400000	158	2652	149	862;863;864;865;866;867;868;869;870;871;872;873	1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143	1131			14	
AADLQLEMTQKPHK	2	Acetyl (K);Oxidation (M)	1666.8349	0.83485551	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	44.631	34.475	3	0.0075124	20157	160513_QHF_FH_JSI12Kac_4	46.318	26.479			0.70584	0.84005	24.748	3	0	Median	NaN	NaN	NaN	0	0	Median	0.70584	0.84005	NaN	1	0	Median	0.59792	0.59546	NaN	1	0	Median	0.89092	0.96247	NaN	1	0	Median	18706000	11226000	7480200	0	0	0	4183400	2631800	1551700	8265200	5129400	3135800	6257700	3464900	2792800	159	286	150	874;875;876	1144;1145;1146;1147;1148;1149	1148	154	114	6	
AADLQLEMTQKPHK	2	Acetyl (K)	1650.8399	0.83994089	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	57.95	47.192	3	0.00036508	26597	160513_QHF_FH_JSI12Kac_4	73.887	62.831			0.67827	0.70291	46.6	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8544	1.0053	NaN	1	0	Median	0.67827	0.67035	NaN	1	0	Median	1.5619	1.6981	NaN	1	0	Median	17131000	9385900	7744900	0	0	0	5907900	3332600	2575300	6682000	4122800	2559200	4540800	1930500	2610400	160	286	150	877;878;879	1150;1151;1152;1153;1154	1154	154		5	
AADMGNPVGQSGLGMAYLYGR	0	Unmodified	2126.9877	0.98774411	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.506	80.354	2	1.3189E-08	69485	160511_QHF_FH_JSI12i_2	94.728	72.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	161	5258	151	880	1155	1155			1	
AADPPAENSSAPEAEQGGAE	0	Unmodified	1896.7973	0.79734361	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.79	9			5						3	3	5	3	26.531	23.39	2;3	2.0912E-18	20905	160511_QHF_FH_JSI10i_1	160.79	158			1.0944	1.0768	15.443	12	1	Median	1.3871	1.1405	6.3687	2	0	Median	0.87	1.0142	19.868	3	0	Median	1.136	1.1001	22.248	4	1	Median	0.99845	1.0132	9.1764	3	0	Plateau	2276500000	1091800000	1184700000	508680000	221890000	286790000	662610000	338320000	324290000	590170000	280240000	309930000	515030000	251380000	263650000	162	2066	152	881;882;883;884;885;886;887;888;889;890;891;892;893;894	1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168;1169;1170;1171;1172;1173	1163			17	
AADPTFVMGHAMATGLVLIGTGSSVK	1	Unmodified	2530.2924	0.29236556	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		93.217	84.097	3	2.9426E-111	47317	160513_QHF_FH_JSI9Kac_6	236.59	217.55			1.157	1.0306	28.841	2	0	Median	1.5022	1.2637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89108	0.84043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288300000	145900000	142400000	128400000	62300000	66098000	0	0	0	159900000	83600000	76304000	0	0	0	163	2918	153	895;896	1174;1175;1176;1177	1176			4	
AADQTTAEQGMR	0	Unmodified	1277.567	0.56701351	3890	Q92805	GOLGA1	Golgin subfamily A member 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.568	10.332	2	0.0083137	8118	160511_QHF_FH_JSI10i_1	49.466	23.907			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	164	3890	154	897	1178	1178			1	
AADRLPNLSSPSAEGPPGPPSGPAPR	0	Unmodified	2494.2564	0.25644906	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			55.345	53.962	3	2.4746E-21	44253	160511_QHF_FH_JSI9i_3	125.82	117.53			1.4033	1.3136	33.293	3	1	Plateau	1.1338	0.96128	45.902	2	1	Median	0.97031	1.093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122910000	58539000	64369000	82374000	37260000	45114000	40534000	21279000	19255000	0	0	0	0	0	0	165	448	155	898;899;900	1179;1180;1181;1182;1183;1184	1183			6	
AADSDDGAVSAPAASDGGVSK	1	Unmodified	1846.8181	0.81807905	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.297	25.726	2	7.4976E-10	22126	160511_QHF_FH_JSI9i_1	150.34	135.65			0.93158	0.94951	4.6018	4	0	Median	1.1846	0.95223	NaN	1	0	Median	0.80858	0.9468	NaN	1	0	Median	1.0177	0.97498	NaN	1	0	Median	0.85272	0.87682	NaN	1	0	Median	147890000	69750000	78142000	39477000	14578000	24900000	42478000	24092000	18386000	36924000	17041000	19883000	29013000	14039000	14974000	166	4094	156	901;902;903;904	1185;1186;1187;1188;1189;1190;1191	1190			7	
AADSQNSGEGNTGAAESSFSQEVSR	0	Unmodified	2485.0589	0.05893104	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	37.605	36.992	2;3	1.9615E-145	33264	160511_QHF_FH_JSI11i_1	358.3	355.52			1.03	1.051	8.3456	8	0	Median	1.3625	1.124	13.001	2	0	Median	0.8388	0.97908	9.2174	2	0	Median	1.0929	1.0482	6.4473	2	0	Median	0.99871	1.0586	0.20657	2	0	Median	683100000	343010000	340090000	115900000	45081000	70822000	194250000	115160000	79089000	207660000	103680000	103980000	165290000	79096000	86197000	167	1016	157	905;906;907;908;909;910;911;912	1192;1193;1194;1195;1196;1197;1198;1199;1200;1201;1202;1203;1204;1205;1206	1195			15	
AADTIGYPVMIR	0	Unmodified	1305.6751	0.67510739	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.43	2	1	1				1	2		2	2	1	2	68.328	62.457	2	1.4185E-22	55767	160511_QHF_FH_JSI9i_1	170.5	138.74			0.97682	1.0058	6.4858	6	0	Median	1.2537	1.0257	8.1826	2	0	Median	0.90294	1.0625	NaN	1	0	Median	1.0567	1.0358	NaN	1	0	Median	0.87849	0.9456	4.5616	2	0	Median	1175500000	610360000	565170000	497010000	238410000	258610000	4183400	1786200	2397100	13786000	6253800	7532000	660550000	363910000	296640000	168	1372	158	913;914;915;916;917;918;919	1207;1208;1209;1210;1211	1210			5	
AADTIGYPVMIR	0	Oxidation (M)	1321.67	0.67002202	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	14.2	0.373							5	1			2	2	2	64.933	54.149	2	5.1884E-08	30325	160513_QHF_FH_JSI11Kac_4	109.29	95.172			1.0845	1.1865	22.827	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2545	1.4811	33.004	2	2	Median	1.0504	1.0222	NaN	1	0	Median	1.1394	1.2483	7.1747	2	0	Median	37947000	18060000	19888000	0	0	0	13720000	5998200	7722000	10419000	5734500	4685000	13808000	6327200	7480600	169	1372	158	920;921;922;923;924;925	1212;1213;1214;1215;1216;1217	1214		1005	6	
AADTQVSETLK	1	Unmodified	1161.5877	0.58773217	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	22.956	22.646	2	1.3713E-05	20035	160511_QHF_FH_JSI12i_1	106.4	66.332			0.75019	0.78734	1.3424	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66132	0.78734	NaN	1	0	Median	0.8013	0.78772	NaN	1	0	Median	0.75019	0.76944	NaN	1	0	Median	279420000	139580000	139850000	0	0	0	75988000	41385000	34602000	91572000	34810000	56762000	111860000	63380000	48484000	170	3860	159	926;927;928	1218;1219;1220;1221;1222	1222			5	
AADTQVSETLK	1	Acetyl (Protein N-term)	1203.5983	0.59829686	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	43.561	41.18	2	9.4506E-08	37105	160511_QHF_FH_JSI10i_1	72.325	53.054			0.91935	0.94993	5.729	5	0	Median	1.0635	0.86668	NaN	1	0	Median	0.82752	0.99615	NaN	1	0	Median	0.955	0.9199	4.5425	2	0	Median	0.91609	0.96215	NaN	1	0	Median	548120000	271200000	276920000	132980000	58135000	74850000	125900000	62786000	63115000	166190000	88908000	77286000	123040000	61372000	61670000	171	3860	159	929;930;931;932;933	1223;1224;1225;1226;1227;1228;1229;1230;1231	1228			9	
AADVENVPPVISTPHHYLISIYR	0	Unmodified	2590.3544	0.35437219	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	1	3	4	2	79.696	73.146	3;4	9.5347E-75	39697	160513_QHF_FH_JSI10Kac_6	214.31	185.81			1.1377	1.1499	11.454	9	1	Median	1.4176	1.2313	NaN	1	0	Median	0.95047	1.1152	9.2197	3	0	Median	1.1968	1.1499	8.1881	3	1	Median	1.0204	1.1035	25.738	2	0	Median	1761800000	802270000	959550000	284940000	106240000	178700000	1156700000	568790000	587950000	234900000	90839000	144060000	85245000	36405000	48840000	172	5535	160	934;935;936;937;938;939;940;941;942;943	1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242	1241			11	
AAEAAAAPAESAAPAAGEEPSK	1	Unmodified	1965.928	0.92796385	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	5.21	8		1	4	6					2	5	6	6	33.761	29.049	2;3	2.2882E-22	25972	160511_QHF_FH_JSI12i_1	200.77	194.93			0.95491	1.024	16.297	18	0	Median	1.292	1.055	0.59564	2	0	Median	0.8224	0.95173	13.485	5	0	Median	1.224	1.1755	28.01	5	0	Median	0.91484	0.97206	8.7201	6	0	Median	7155000000	3499000000	3656000000	1431700000	626040000	805670000	1934000000	973360000	960680000	1703500000	748190000	955350000	2085700000	1151400000	934300000	173	2101	161	944;945;946;947;948;949;950;951;952;953;954;955;956;957;958;959;960;961;962	1243;1244;1245;1246;1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280	1257			38	
AAEAAAAPAESAAPAAGEEPSKEEGEPK	2	Unmodified	2635.2249	0.22493374	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.52	12	3	1		4	6				3	8	8	7	34.274	30.357	2;3;4	4.9694E-48	27160	160511_QHF_FH_JSI12i_1	184.15	173.2			1.0129	1.0761	6.9142	23	0	Median	1.295	1.0692	10.959	3	0	Plateau	0.86831	1.0348	3.579	8	0	Median	1.0963	1.0798	9.7199	6	0	Median	1.0138	1.0808	4.4765	6	0	Median	24048000000	10830000000	13218000000	4740700000	2118600000	2622100000	6273900000	3016000000	3257900000	5675600000	2474700000	3200900000	7358000000	3221100000	4136900000	174	2101	162	963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983;984;985;986;987;988	1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329;1330;1331;1332;1333;1334;1335	1301			55	
AAEAAAAPAESAAPAAGEEPSKEEGEPKK	3	Unmodified	2763.3199	0.31989675	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	26.776	26.207	3;4	4.5239E-20	23299	160511_QHF_FH_JSI12i_1	112.39	109.85			0.98207	1.0621	15.545	5	1	Median	0.98207	0.78882	NaN	1	0	Median	0.91208	1.0621	NaN	1	0	Median	1.1354	1.1004	NaN	1	0	Median	0.95324	1.0022	16.965	2	1	Median	1000500000	458330000	542200000	177750000	87259000	90495000	241360000	118510000	122860000	285530000	124850000	160690000	295880000	127720000	168160000	175	2101	163	989;990;991;992;993	1336;1337;1338;1339;1340;1341;1342;1343;1344;1345	1339			10	
AAEAADLGLGAAVPVELRR	0	Acetyl (Protein N-term)	1920.0429	0.042874453	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	91.575	91.139	2	7.5868E-07	82637	160511_QHF_FH_JSI10i_1	104.17	81.257			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	176	5674	164	994;995;996;997;998	1346;1347;1348;1349;1350	1349			5	
AAEAAGGKYR	1	Acetyl (K);Acetyl (Protein N-term)	1076.5251	0.52507234	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	1	2	35.236	26.596	2	1.3981E-05	12810	160513_QHF_FH_JSI12Kac_2	101.72	70.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	177	3962	166	999;1000;1001;1002;1003	1351;1352;1353;1354;1355	1355	3012		5	
AAEAAPPTQEAQGETEPTEQAPDALEQAADTSR	0	Unmodified	3379.5288	0.52877991	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.585	58.163	3	1.1608E-09	52542	160511_QHF_FH_JSI10i_1	63.776	58.346			0.95328	0.92564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95328	0.92564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15474000	10245000	5229700	0	0	0	0	0	0	15474000	10245000	5229700	0	0	0	178	3499	167	1004;1005;1006	1356;1357;1358	1357			3	
AAEAAPPTQEAQGETEPTEQAPDALEQAADTSRR	0	Unmodified	3535.6299	0.62989094	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	54.653	53.991	3	2.4606E-23	49091	160511_QHF_FH_JSI12i_1	95.302	90.948			1.0806	1.1289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0806	1.1289	NaN	1	1	Median	164640000	129080000	35559000	0	0	0	0	0	0	0	0	0	164640000	129080000	35559000	179	3499	168	1007	1359;1360	1360			2	
AAEADGPLK	1	Acetyl (Protein N-term)	912.45526	0.45526144	508	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	4.84	2			3	1					1	1	1	3	34.84	29.209	2	2.3345E-05	26824	160511_QHF_FH_JSI12i_1	75.109	63.204			0.89189	0.99167	101.14	5	2	Median	0.14004	0.11423	NaN	1	1	Median	0.89189	0.99167	NaN	1	0	Median	1.0158	0.99602	NaN	1	0	Median	0.73634	0.79677	81.961	2	1	Median	170300000	130660000	39636000	67930000	57864000	10065000	2526400	1195600	1330800	5365600	2291200	3074500	94474000	69309000	25165000	180	508	169	1008;1009;1010;1011;1012;1013	1361;1362;1363;1364;1365;1366;1367	1361			7	
AAEAEPR	0	Unmodified	742.36097	0.36096712	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	2	3	4.7165	1.7608	2	0.0012547	2355	160511_QHF_FH_JSI10i_1	122.79	19.81			0.91552	0.99132	10.288	8	1	Median	1.5125	1.2243	NaN	1	0	Median	0.88548	1.0362	2.1876	2	0	Median	0.95067	0.93083	4.6201	2	1	Median	0.87444	0.96319	8.2371	3	0	Median	4221300000	2239100000	1982200000	404810000	176480000	228330000	1337300000	702330000	634930000	1206100000	655710000	550380000	1273200000	704570000	568590000	181	1867	170	1014;1015;1016;1017;1018;1019;1020;1021	1368;1369;1370;1371;1372;1373;1374	1372			7	
AAEAEVELSAR	0	Unmodified	1144.5724	0.57241646	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.6	28.037	2	0.008453	25096	160511_QHF_FH_JSI12i_1	50.292	41.429			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	182	3479	171	1022	1375	1375			1	
AAECNIVVTQPR	0	Unmodified	1356.682	0.68198369	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	4.92	1					3	1				1	2	2	38.332	31.521	2	3.0489E-07	28126	160511_QHF_FH_JSI12i_1	128.28	111.61			0.93853	0.97387	131.18	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7072	0.84479	NaN	1	0	Median	0.86767	0.84974	NaN	1	0	Median	3.5359	3.756	171.61	2	0	Median	110000000	16028000	93972000	0	0	0	2618200	1572600	1045500	3798100	2109400	1688700	103580000	12346000	91237000	183	2265	172	1023;1024;1025;1026;1027	1376;1377;1378;1379	1376			4	
AAEDDEDDDVDTKK	2	Unmodified	1564.6377	0.63765507	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	3	2	8.9331	8.6464	2;3	3.0413E-11	6573	160511_QHF_FH_JSI12i_1	195.25	181.89			0.70727	0.66315	90.405	7	4	Median	2.1138	1.7641	NaN	1	0	Median	0.51759	0.62028	NaN	1	0	Median	0.55311	0.54359	13.229	3	3	Median	2.4813	2.5745	126.5	2	1	Median	687090000	365520000	321570000	96831000	31773000	65057000	151390000	117710000	33682000	175980000	119470000	56510000	262890000	96567000	166320000	184	849	173	1028;1029;1030;1031;1032;1033;1034;1035	1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390	1385			11	
AAEDELQLPR	0	Acetyl (Protein N-term)	1182.5881	0.58806652	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			62.399	61.673	2	2.4913E-06	54646	160511_QHF_FH_JSI9i_1	140.14	129.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	185	2082	174	1036;1037	1391;1392	1392			2	
AAEDGFRK	1	Unmodified	892.44028	0.44028008	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	2.8	0.4		1	4								1	1	3	7.4271	7.2357	2;3	0.00095506	4646	160511_QHF_FH_JSI12i_3	96.19	21.935			1.0493	1.113	28.556	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2782	1.505	NaN	1	0	Median	1.3126	1.2258	NaN	1	0	Median	0.85519	0.8976	21.944	3	1	Median	868560000	555260000	313300000	0	0	0	17030000	7845100	9184600	96736000	47566000	49170000	754790000	499850000	254940000	186	5378	175	1038;1039;1040;1041;1042	1393;1394;1395	1394			3	
AAEDLFVNIR	0	Unmodified	1146.6033	0.60332266	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.395	63.092	2	0.00018309	54237	160511_QHF_FH_JSI12i_2	95.502	85.473			0.78587	0.86405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78587	0.86405	NaN	1	0	Median	33509000	21302000	12207000	0	0	0	0	0	0	0	0	0	33509000	21302000	12207000	187	5507	176	1043	1396	1396			1	
AAEDSPYWVSPAYSK	1	Unmodified	1669.7624	0.76240208	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.414	55.758	2	1.425E-14	50598	160511_QHF_FH_JSI12i_1	185.59	160.36			0.7374	0.74026	5.7956	4	0	Median	0.83132	0.67517	NaN	1	0	Median	0.63544	0.76382	NaN	1	0	Median	0.73577	0.71997	NaN	1	0	Median	0.73903	0.76112	NaN	1	0	Median	329190000	190870000	138320000	83379000	43600000	39779000	78831000	44390000	34441000	95604000	57268000	38336000	71378000	45611000	25768000	188	5063	177	1044;1045;1046;1047	1397;1398;1399;1400;1401;1402;1403;1404;1405	1400			9	
AAEEIGIK	1	Unmodified	829.45453	0.45453316	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	22.259	21.646	2	0.00043207	18954	160511_QHF_FH_JSI12i_1	108.46	59.102			0.9537	0.99627	14.989	7	0	Median	1.0925	0.90812	13.101	2	0	Median	0.90791	1.0905	9.4391	2	0	Median	0.90795	0.89032	24.217	2	0	Median	0.91693	0.95118	NaN	1	0	Median	2321000000	1194200000	1126800000	621210000	276280000	344940000	557280000	319830000	237450000	605490000	335190000	270300000	537030000	262950000	274090000	189	1004	178	1048;1049;1050;1051;1052;1053;1054	1406;1407;1408;1409;1410;1411;1412	1407			7	
AAEEIGIKATHIK	2	Acetyl (K)	1421.7878	0.78782897	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								4			1	1	2	53.05	42.483	3	0.00043266	23529	160513_QHF_FH_JSI11Kac_5	72.891	57.992			0.40232	0.39995	99.631	3	1	Median	NaN	NaN	NaN	0	0	Median	0.92159	1.0918	NaN	1	0	Median	0.40232	0.39995	NaN	1	0	Median	0.13952	0.14885	NaN	1	1	Median	28758000	19353000	9405700	0	0	0	5691000	1995300	3695700	18203000	14115000	4088900	4864000	3243000	1621000	190	1004	179	1055;1056;1057;1058	1413;1414;1415;1416;1417;1418	1413	798;799		6	
AAEEPQQQK	1	Acetyl (Protein N-term)	1069.504	0.50400254	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	5	4.9	3			2						1		2	2	11.726	8.4749	2	5.8579E-05	7613	160511_QHF_FH_JSI9i_1	75.213	64.503			0.91788	0.92011	84.919	5	1	Median	1.3652	1.0942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.37314	0.36693	130.01	2	1	Median	0.87998	0.93664	6.5699	2	0	Median	587160000	329330000	257840000	254520000	114360000	140170000	0	0	0	119330000	100110000	19224000	213300000	114860000	98447000	191	4077	180	1059;1060;1061;1062;1063	1419;1420;1421;1422;1423	1420			5	
AAEEPSK	1	Unmodified	730.34973	0.34973373	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	4.8758	4.5562	2	0.0034484	2382	160511_QHF_FH_JSI11i_1	104.45	77.131			0.86115	1.0309	27.862	5	1	Median	0.83759	0.69105	NaN	1	0	Median	0.86115	1.0309	NaN	1	0	Median	1.2104	1.1813	NaN	1	0	Median	0.89341	0.95108	39.387	2	1	Median	7677300000	3773000000	3904300000	746370000	371000000	375370000	2020300000	1040800000	979510000	2177500000	949950000	1227600000	2733100000	1411200000	1321800000	192	1329	181	1064;1065;1066;1067;1068	1424;1425;1426;1427;1428;1429	1425			6	
AAEEPSKVEEK	2	Unmodified	1215.5983	0.59829686	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	8	10					2			4	6	4	6	8.5847	7.3027	2;3	4.5187E-12	5581	160511_QHF_FH_JSI11i_1	144.17	79.874			0.84901	0.9121	22.575	19	6	Median	1.0832	0.91632	5.9869	4	1	Median	0.69794	0.81075	27.579	6	3	Median	0.96763	0.97342	23.988	4	1	Median	0.86865	0.94065	10.848	5	1	Median	7264700000	3843500000	3421200000	1444600000	633520000	811040000	1940700000	1223300000	717430000	2011900000	1058900000	952960000	1867600000	927790000	939810000	193	1329	182	1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088	1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455	1431			26	
AAEESASQIQSSAQR	0	Unmodified	1561.7332	0.73322721	2468	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.05	16.802	2	7.3154E-06	14239	160511_QHF_FH_JSI10i_1	86.772	71.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	194	2468	183	1089	1456	1456			1	
AAEEVEAK	1	Unmodified	845.41306	0.41306227	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.0788	6.7431	2	0.00024966	4358	160511_QHF_FH_JSI9i_1	116.37	58.908			1.0032	1.0135	8.3306	4	0	Median	1.0867	0.89516	NaN	1	0	Median	0.90341	1.0894	NaN	1	0	Median	1.0298	0.99269	NaN	1	0	Median	0.97726	1.0347	NaN	1	0	Median	2645700000	1336400000	1309300000	728520000	361950000	366560000	674540000	384320000	290220000	616000000	269320000	346680000	626630000	320790000	305840000	195	5098	184	1090;1091;1092;1093	1457;1458;1459;1460;1461;1462;1463;1464	1464			8	
AAEFGEPTSEQTGTAAGK	1	Unmodified	1750.801	0.80097243	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	29.27	28.586	2	3.2143E-08	25369	160511_QHF_FH_JSI11i_1	125.53	95.983			1.4836	1.4167	14.299	3	1	Median	1.8466	1.5394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4836	1.4167	NaN	1	1	Median	1.1139	1.1652	NaN	1	0	Median	87669000	35698000	51971000	23238000	8977400	14261000	0	0	0	22301000	6620400	15681000	42130000	20100000	22030000	196	693	185	1094;1095;1096	1465;1466;1467;1468	1465			4	
AAEHAWQK	1	Unmodified	939.45626	0.45626449	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.016	7.1137	2	0.0020525	4691	160511_QHF_FH_JSI12i_3	92.47	46.455			1.0285	1.0833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0285	1.0833	NaN	1	1	Median	58152000	26441000	31711000	0	0	0	0	0	0	0	0	0	58152000	26441000	31711000	197	1501	186	1097	1469	1469			1	
AAEIASSDSANVSSR	0	Unmodified	1463.6852	0.68521439	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.402	18.282	2	0.011335	15603	160511_QHF_FH_JSI11i_1	56.225	41.253			0.68629	0.65354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68629	0.65354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39574000	20247000	19327000	0	0	0	0	0	0	39574000	20247000	19327000	0	0	0	198	1534	187	1098	1470	1470			1	
AAEINGEVDDDDAGGEWR	0	Unmodified	1917.7977	0.79767796	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	46.032	45.606	2	1.1585E-23	41307	160511_QHF_FH_JSI12i_1	138.77	125.34			0.40617	0.48013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40617	0.48013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15725000	12982000	2743400	0	0	0	15725000	12982000	2743400	0	0	0	0	0	0	199	3858	188	1099;1100	1471;1472	1471			2	
AAEKQMK	2	Acetyl (K);Oxidation (M)	862.42185	0.42185282	1297	P27797	CALR	Calreticulin	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	4.6783	-2.4957	2	0.059256	1439	160513_QHF_FH_JSI12Kac_3	40.203	14.376			0.11904	0.13076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11904	0.13076	NaN	1	0	Median	17353000	15104000	2249500	0	0	0	0	0	0	0	0	0	17353000	15104000	2249500	200	1297	189	1101	1473	1473			0	
AAEKQVPGGGGGGGSGGGGGSGGGGSGGGR	1	Acetyl (Protein N-term)	2284.0177	0.017675348	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	1	0	1				By MS/MS	13	0						1							1	21.888	14.83	3	0.01923	9429	160513_QHF_FH_JSI12Kac_3	35.028	31.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1876700	1876700	0	0	0	0	0	0	0	0	0	0	1876700	1876700	0	201	5295	190	1102	1474	1474			1	
AAELEMELNEHSLVIDTLK	1	Unmodified	2154.0878	0.087835314	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.229	87.276	3	0.00063236	75412	160511_QHF_FH_JSI12i_2	54.805	40.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	202	5313	191	1103	1475	1475			1	
AAELETDIR	0	Unmodified	1016.5138	0.51383895	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		28.845	28.246	2	0.0012901	24966	160511_QHF_FH_JSI11i_1	78.149	25.433			0.81659	0.95271	4.0228	3	3	Plateau	1.2112	1.0319	NaN	1	1	Median	0.81659	0.95271	NaN	1	1	Median	1.0684	1.0002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	223290000	110600000	112690000	65271000	30201000	35070000	87493000	45807000	41687000	70527000	34595000	35932000	0	0	0	203	623	192	1104;1105;1106	1476;1477;1478	1476			3	
AAELGAR	0	Unmodified	686.37114	0.37113788	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	5.9003	5.3161	2	0.049013	3290	160511_QHF_FH_JSI12i_2	43.066	8.1738			0.76308	0.86856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76308	0.86856	NaN	1	0	Median	136840000	74971000	61870000	0	0	0	0	0	0	0	0	0	136840000	74971000	61870000	204	765	193	1107	1479	1479			1	
AAELIANSLATAGDGLIELR	0	Unmodified	1997.0793	0.079319539	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.653	5	8	2							3	5	4	3	101.07	100.96	2;3	2.3197E-99	88656	160511_QHF_FH_JSI11i_2	319.28	297.98			0.81378	0.82979	20.171	15	1	Median	1.1097	0.93801	11.462	3	0	Median	0.5402	0.65724	14.393	5	1	Median	0.82071	0.81657	14.507	4	0	Median	0.85804	0.90232	5.6369	3	0	Median	5016500000	2650600000	2365900000	1098500000	507850000	590680000	1371300000	858220000	513050000	1433400000	709890000	723550000	1113300000	574640000	538610000	205	1424	194	1108;1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122	1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497	1494			17	
AAELIANSLATAGDGLIELRK	1	Unmodified	2125.1743	0.17428256	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	4	3	3	92.916	92.472	3;4	2.5174E-19	77207	160511_QHF_FH_JSI10i_3	154.84	151.18			0.91155	0.93914	40.11	11	3	Median	0.9782	0.82458	6.6505	2	0	Median	0.64402	0.75548	55.903	4	2	Median	1.0918	1.0665	21.404	3	0	Median	0.94527	0.98173	18.282	2	1	Median	1393700000	586050000	807670000	197870000	94585000	103280000	329900000	151170000	178730000	641140000	230840000	410300000	224810000	109450000	115360000	206	1424	195	1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134	1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515;1516;1517	1504			19	
AAELLAR	0	Unmodified	742.43374	0.43373813	1828	P54707	ATP12A	Potassium-transporting ATPase alpha chain 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		18.493	17.866	2	0.011128	14532	160511_QHF_FH_JSI11i_2	71.852	0			1.0061	1.0244	6.1252	3	0	Median	1.2063	1.0244	NaN	1	0	Median	0.74735	0.92498	NaN	1	0	Median	1.0061	1.0322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1014900000	502970000	511910000	246540000	105020000	141520000	284040000	155570000	128470000	484300000	242380000	241920000	0	0	0	207	1828	196	1135;1136;1137	1518;1519;1520	1519			3	
AAELLQDEYSGR	0	Unmodified	1350.6416	0.64155866	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			2	2	2	1	39.894	39.223	2	3.8276E-05	35365	160511_QHF_FH_JSI11i_1	103.63	87.97			0.81424	0.7969	18.578	6	4	Median	0.93002	0.75941	38.029	2	1	Median	0.65811	0.7719	NaN	1	1	Median	0.81424	0.7969	3.0879	2	1	Median	0.88175	0.92242	NaN	1	1	Median	527250000	289090000	238160000	111310000	51562000	59747000	93031000	54815000	38216000	246290000	141700000	104590000	76614000	41011000	35603000	208	4443	197	1138;1139;1140;1141;1142;1143;1144	1521;1522;1523;1524;1525;1526;1527	1521			7	
AAELTATQVEEEEEEEDFRK	1	Unmodified	2352.0605	0.06049417	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	52.597	51.993	3	1.7453E-83	46800	160511_QHF_FH_JSI10i_1	247.61	242.96			0.92512	1.0835	6.0116	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92512	1.0835	NaN	1	0	Median	1.234	1.2141	NaN	1	0	Median	1.1518	1.1861	NaN	1	0	Median	398210000	195900000	202310000	0	0	0	164560000	85039000	79522000	115890000	49835000	66053000	117760000	61024000	56739000	209	560	198	1145;1146;1147;1148	1528;1529;1530;1531;1532;1533;1534	1532			7	
AAEMEHLLER	0	Unmodified	1197.5812	0.58120701	3309	Q86TM6	SYVN1	E3 ubiquitin-protein ligase synoviolin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			37.983	37.02	3	0.046219	32632	160511_QHF_FH_JSI10i_2	27.428	23.255			0.5348	0.65439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5348	0.65439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22721000	11937000	10783000	0	0	0	22721000	11937000	10783000	0	0	0	0	0	0	210	3309	199	1149	1535	1535			1	
AAEPLLTLER	0	Unmodified	1111.6237	0.62372375	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	56.486	55.527	2	0.010816	47650	160511_QHF_FH_JSI12i_2	57.032	41.37			1.1227	0.98185	22.056	3	1	Plateau	1.3413	1.1841	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76463	0.81412	NaN	1	0	Median	1.1227	1.2012	NaN	1	1	Median	113490000	59980000	53508000	32977000	15571000	17406000	0	0	0	38904000	26576000	12328000	41607000	17833000	23774000	211	426	200	1150;1151;1152	1536;1537	1536			1	
AAEPLTELEESIETVVTTFFTFAR	0	Acetyl (Protein N-term)	2742.364	0.3639934	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	4.66		1		1	1		1		3	1	3	2	1	108.57	101.55	2;3	1.9144E-106	60818	160513_QHF_FH_JSI10Kac_6	357.64	339.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	212	4289	201	1153;1154;1155;1156;1157;1158;1159	1538;1539;1540;1541;1542;1543;1544;1545;1546;1547	1547			10	
AAEPQEQEFGK	1	Unmodified	1232.5673	0.56733108	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	21.908	20.036	2	1.8391E-18	17235	160511_QHF_FH_JSI10i_1	166.07	146.97			0.85231	0.86952	24.738	5	0	Median	0.85231	0.70926	NaN	1	0	Median	0.71854	0.86952	NaN	1	0	Median	0.948	0.91456	NaN	1	0	Median	0.7023	0.72688	43.46	2	0	Median	337430000	165920000	171510000	87266000	37251000	50015000	66752000	38990000	27763000	79743000	38538000	41205000	103670000	51144000	52529000	213	4581	202	1160;1161;1162;1163;1164	1548;1549;1550;1551;1552;1553;1554;1555;1556	1553			9	
AAEPVEDNCINFVAMK	1	Acetyl (Protein N-term)	1848.8386	0.83862026	2490	Q14116	IL18	Interleukin-18	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	83.264	82.829	2	9.7334E-06	75464	160511_QHF_FH_JSI12i_1	110.66	96.853			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17915000	0	17915000	0	0	0	0	0	0	10651000	0	10651000	7264500	0	7264500	214	2490	203	1165;1166	1557;1558	1558			2	
AAEPVSR	0	Unmodified	728.3817	0.38170256	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.9942	5.3877	2	0.049097	3226	160511_QHF_FH_JSI9i_1	47.849	12.648			1.306	1.0819	NaN	1	1	Median	1.306	1.0819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	199240000	90528000	108710000	199240000	90528000	108710000	0	0	0	0	0	0	0	0	0	215	5298	204	1167	1559	1559			1	
AAEPVTFHVPWK	1	Unmodified	1380.719	0.71902112	3446	Q8IXQ3	C9orf40	Uncharacterized protein C9orf40	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	65.167	64.655	3	5.8051E-05	55735	160511_QHF_FH_JSI12i_3	77.597	71.649			0.8883	1.1111	22.146	4	0	Linear	0.75587	0.66479	NaN	1	0	Median	0.63544	0.76514	NaN	1	0	Median	1.0439	0.93384	NaN	1	0	Median	1.0942	1.1007	NaN	1	0	Median	193580000	102240000	91342000	13029000	7868500	5161000	25850000	13423000	12427000	47826000	27396000	20430000	106870000	53549000	53324000	216	3446	205	1168;1169;1170;1171	1560;1561;1562	1562			3	
AAEQAHLWAELVFLYDK	1	Unmodified	2003.0153	0.015262719	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.725	83.397	3	7.3746E-17	44768	160513_QHF_FH_JSI12Kac_6	137.05	118.51			0.78631	0.87441	16.353	4	3	Linear	1.3295	1.1289	NaN	1	1	Median	0.92311	1.0639	NaN	1	1	Median	1.3425	1.2884	NaN	1	1	Median	0.82618	0.86965	NaN	1	0	Median	556380000	294600000	261780000	95327000	42617000	52710000	189240000	93794000	95445000	83030000	42134000	40896000	188790000	116050000	72734000	217	1807;2155	206	1172;1173;1174;1175	1563;1564;1565;1566;1567	1565			5	
AAEQDPEAR	0	Acetyl (Protein N-term)	1027.4571	0.45705235	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	4.33	4.71	2			1								1	2	13.304	10.644	2	8.7359E-05	9596	160511_QHF_FH_JSI12i_1	93.162	87.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	218	3167	207	1176;1177;1178	1568;1569;1570	1569			3	
AAEQYTPK	1	Unmodified	906.4447	0.44469675	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.84	4	2	3			3	4			2	5	5	4	11.101	8.5774	2	7.1245E-05	5622	160513_QHF_FH_JSI11Kac_3	127.56	108.78			0.88616	0.95814	21.166	10	3	Median	1.5951	1.3239	2.0795	2	1	Median	0.85296	1.0054	22.788	4	2	Median	0.89417	0.87878	3.1749	2	0	Median	0.80726	0.87522	1.62	2	0	Median	6165300000	2762500000	3402900000	1729400000	590340000	1139000000	1548500000	749330000	799150000	1315600000	672180000	643370000	1571900000	750610000	821330000	219	1650	208	1179;1180;1181;1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192;1193;1194	1571;1572;1573;1574;1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590	1579			20	
AAEQYTPKAK	2	Acetyl (K)	1147.5873	0.58733824	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	23.715	16.357	2	0.0046507	9893	160513_QHF_FH_JSI10Kac_3	76.465	39.771			6.0765	6.3277	87.913	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3107	1.4335	NaN	1	0	Median	7.9313	7.7028	NaN	1	1	Median	4.6437	5.1858	NaN	1	1	Median	6049600	2920400	3129200	0	0	0	2568700	1956000	612700	1398200	139820	1258400	2082600	824500	1258100	220	1650	209	1195;1196;1197;1198	1591;1592;1593;1594	1594	1660;1661		4	
AAESETPGK	1	Unmodified	888.41888	0.41887593	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	5.53	3				3	2				1	2	3	2	5.7203	1.0525	2	9.0679E-07	2811	160511_QHF_FH_JSI9i_1	135.83	85.199			0.88327	0.93678	9.8604	8	0	Median	1.0258	0.8453	NaN	1	0	Median	0.80018	0.93678	0.15752	2	0	Median	0.96835	0.95829	14.298	3	0	Median	0.8834	0.92012	13.832	2	0	Median	1288600000	665140000	623470000	318160000	146970000	171180000	9287000	5390900	3896100	458020000	235590000	222430000	503150000	277190000	225960000	221	596	210	1199;1200;1201;1202;1203;1204;1205;1206	1595;1596;1597;1598;1599;1600;1601;1602	1598			8	
AAESGSDFQQR	0	Acetyl (Protein N-term)	1236.5371	0.53709359	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				23.474	22.268	2	0.00067548	19050	160511_QHF_FH_JSI9i_1	72.607	65.039			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	222	3989	211	1207	1603	1603			1	
AAESLADPTEYENLFPGLK	1	Unmodified	2064.0052	0.0051515425	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	99.81	99.69	2;3	3.1004E-42	90296	160511_QHF_FH_JSI10i_1	248.64	210.01			0.96039	0.96445	3.6634	8	0	Median	1.1589	0.96304	0.64099	2	0	Median	0.85249	1.0027	3.8823	2	0	Median	0.98402	0.96397	1.1756	2	0	Median	0.91001	0.93064	4.6125	2	0	Median	1178700000	608520000	570170000	212950000	94953000	118000000	394760000	219720000	175040000	210120000	109430000	100690000	360850000	184410000	176440000	223	1438	212	1208;1209;1210;1211;1212;1213;1214;1215	1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632	1622			29	
AAESLTAIPEPASPQLLETPIHASQIQK	1	Unmodified	2939.5604	0.5604018	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	87.228	86.634	3	1.427E-18	76200	160511_QHF_FH_JSI9i_2	110.94	104.65			1.1113	1.0387	16.611	5	1	Median	1.1113	0.97491	NaN	1	0	Median	0.82287	1.0164	NaN	1	0	Median	1.3631	1.3337	12.377	2	1	Median	0.95981	1.0387	NaN	1	0	Median	161420000	75522000	85895000	27421000	13166000	14255000	28635000	15327000	13308000	72780000	28434000	44346000	32580000	18594000	13986000	224	2557	213	1216;1217;1218;1219;1220	1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643	1638			11	
AAESPDQK	1	Unmodified	844.39266	0.39266118	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.73	7	1			3	4				5	2	4	4	4.4172	1.7367	2	2.1625E-07	2177	160511_QHF_FH_JSI11i_1	154.35	119.24			0.96048	0.84606	29.66	12	1	Median	0.95343	0.77837	9.5798	4	1	Median	0.7732	0.90214	48.252	2	0	Median	1.0121	0.95741	38.783	4	0	Median	0.88322	0.94844	22.788	2	0	Median	4002800000	1911100000	2091700000	409350000	204030000	205320000	1206600000	575480000	631100000	1139900000	524050000	615840000	1247000000	607500000	639480000	225	1812	214	1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235	1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659	1645			16	
AAETQTLNFGPEWLR	0	Acetyl (Protein N-term)	1773.8686	0.86859848	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.08	100.96	2	6.8328E-26	91632	160511_QHF_FH_JSI10i_1	220.1	195.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	226	3172	215	1236;1237;1238;1239	1660;1661;1662;1663	1662			4	
AAETVLK	1	Unmodified	730.4225	0.42250475	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	15.869	12.476	2	0.0060238	10595	160511_QHF_FH_JSI11i_1	92.677	21.535			1.1234	0.94751	15.131	7	0	Linear	1.1231	0.92944	NaN	1	0	Median	0.81801	0.93806	NaN	1	0	Median	1.0328	1.0187	16.056	2	0	Median	1.1234	1.199	4.308	3	0	Plateau	1331500000	561090000	770420000	365290000	136620000	228670000	323890000	159280000	164610000	376870000	154410000	222450000	265470000	110780000	154690000	227	1872	216	1240;1241;1242;1243;1244;1245;1246	1664;1665;1666;1667;1668	1664			5	
AAEVLNK	1	Unmodified	743.41775	0.41775372	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	5.96	3	2				4	2			3	3	2	3	13.785	8.5719	2	0.00052112	8218	160511_QHF_FH_JSI9i_1	132.96	70.622			1.0094	1.0374	18.562	11	2	Median	1.2751	1.0374	17.029	3	1	Median	0.98749	1.1757	26.678	3	1	Median	1.1003	1.0767	10.936	2	0	Median	0.87348	0.94309	18.92	3	0	Median	6345900000	3009000000	3336900000	2183900000	890820000	1293100000	2369000000	1257000000	1112100000	69536000	36433000	33103000	1723400000	824800000	898560000	228	1765	217	1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257	1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680	1675			12	
AAEVLNKHSLSGR	1	Acetyl (K)	1422.7579	0.75792582	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		43.838	33.866	3	0.00053673	18486	160513_QHF_FH_JSI11Kac_6	70.26	60.827			0.41604	0.40985	71.259	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41604	0.40985	71.259	2	1	Median	NaN	NaN	NaN	0	0	Median	18106000	13484000	4621400	0	0	0	0	0	0	18106000	13484000	4621400	0	0	0	229	1765	218	1258;1259	1681;1682	1681	1778		2	
AAEVLPSAR	0	Acetyl (Protein N-term)	954.51345	0.51344502	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	47.655	46.937	1;2	0.0011875	42418	160511_QHF_FH_JSI11i_1	68.016	50.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	230	4604	219	1260;1261;1262;1263;1264;1265;1266	1683;1684;1685;1686;1687;1688;1689	1683			7	
AAEVWMDEYK	1	Unmodified	1240.5434	0.54342452	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	51.797	50.913	2	9.9695E-10	43582	160511_QHF_FH_JSI12i_2	136.57	49.09			0.90407	0.99648	76.616	7	3	Median	0.555	0.46761	134.12	2	1	Median	0.90407	1.1208	NaN	1	0	Median	0.65129	0.64108	62.378	2	1	Median	0.53476	0.5831	90.258	2	1	Median	1179800000	824580000	355180000	362080000	277700000	84386000	69628000	37998000	31630000	358870000	220270000	138600000	389170000	288610000	100560000	231	2294	220	1267;1268;1269;1270;1271;1272;1273	1690;1691;1692;1693	1691			4	
AAEVYTR	0	Unmodified	808.40792	0.40791731	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		9.5928	9.3943	2	0.037155	6806	160511_QHF_FH_JSI11i_2	48.787	28.232			1.294	1.3252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.294	1.3252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5161700000	2531400000	2630300000	0	0	0	0	0	0	5161700000	2531400000	2630300000	0	0	0	232	3277	221	1274	1694	1694			1	
AAEWQLDQPSWSGR	0	Unmodified	1629.7536	0.75356872	5056	Q9NVZ3	NECAP2	Adaptin ear-binding coat-associated protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	63.312	62.005	2	4.5277E-05	53270	160511_QHF_FH_JSI12i_2	77.64	62.069			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	233	5056	222	1275	1695	1695			1	
AAFAELHNCIIDK	1	Unmodified	1500.7395	0.73949856	5012	Q9NUQ6	SPATS2L	SPATS2-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	53.546	53.308	3	0.058418	45741	160511_QHF_FH_JSI12i_3	23.831	6.031			1.5536	1.6205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5536	1.6205	NaN	1	1	Median	17731000	6220200	11511000	0	0	0	0	0	0	0	0	0	17731000	6220200	11511000	234	5012	223	1276	1696	1696			1	
AAFAMVTHVK	1	Unmodified	1073.5692	0.56918576	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.64			2					2	9	3	5	1	4	44.271	36.265	2;3	0.00040487	19337	160513_QHF_FH_JSI9Kac_6	79.16	56.379			1.0438	1.1205	35.739	13	9	Median	1.1832	0.98384	67.571	3	3	Median	0.90006	1.0713	21.833	5	3	Median	1.2254	1.1918	NaN	1	1	Median	1.2063	1.3535	26.274	4	2	Median	208660000	110250000	98403000	46085000	27344000	18741000	101750000	54419000	47333000	23322000	11913000	11409000	37498000	16578000	20920000	235	5618	224	1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289	1697;1698;1699;1700;1701;1702;1703;1704;1705;1706	1699			10	
AAFAPFGR	0	Unmodified	835.43407	0.43407249	1375	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	44.55	43.703	2	0.0012824	36647	160511_QHF_FH_JSI10i_3	91.584	82.344			1.074	0.97429	14.313	4	2	Median	1.19	0.96875	NaN	1	1	Median	0.70347	0.804	NaN	1	0	Median	1.2374	1.1404	NaN	1	0	Median	0.96932	0.97985	NaN	1	1	Median	387960000	193590000	194370000	112430000	48707000	63726000	99742000	60224000	39518000	90461000	41554000	48907000	85325000	43105000	42219000	236	1375	225	1290;1291;1292;1293;1294	1707;1708;1709;1710;1711;1712	1709			6	
AAFDDAIAELDTLSEESYK	1	Unmodified	2086.9583	0.95826093	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	101.37	101.26	2;3	0	91942	160511_QHF_FH_JSI11i_1	426.61	413.47			0.96554	1.0247	11.266	16	1	Median	1.2007	0.99103	14.21	4	0	Median	0.86388	1.0416	6.8261	4	0	Median	0.9636	0.94012	5.3817	4	1	Median	1.0631	1.1152	8.4244	4	0	Median	28567000000	14100000000	14467000000	4237600000	1929200000	2308500000	9145000000	4781300000	4363700000	6210700000	3056900000	3153800000	8974100000	4333200000	4641000000	237	1990	226	1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310	1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743	1716			31	
AAFENWEVEVTFR	0	Unmodified	1596.7573	0.75725712	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	86.396	85.813	2	8.5783E-05	75513	160511_QHF_FH_JSI11i_2	113.22	88.843			1.4509	1.46	28.121	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4509	1.46	28.121	2	2	Median	NaN	NaN	NaN	0	0	Median	55826000	19264000	36562000	0	0	0	0	0	0	55826000	19264000	36562000	0	0	0	238	1648	227	1311;1312;1313	1744;1745;1746;1747	1747			4	
AAFGEEVDAVDTGISR	0	Unmodified	1635.774	0.77402939	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	60.352	59.706	2;3	1.1061E-21	54016	160511_QHF_FH_JSI10i_1	134.68	117.91			0.99738	1.0249	14.153	8	3	Median	1.3982	1.1409	14.737	2	1	Median	0.82016	0.969	21.648	2	1	Median	1.1371	1.1101	19.221	2	1	Median	0.99102	1.0165	0.73974	2	0	Median	728840000	367740000	361100000	161080000	67335000	93746000	186120000	97073000	89051000	214410000	106330000	108090000	167220000	97008000	70215000	239	117	228	1314;1315;1316;1317;1318;1319;1320;1321;1322	1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758	1756			10	
AAFGISDSYVDGSSFDPQR	0	Unmodified	2017.9017	0.9017491	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	74.165	73.424	2	3.8268E-07	66884	160511_QHF_FH_JSI12i_1	92.925	78.239			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	240	5474	229	1323;1324	1759;1760	1759			2	
AAFGISDSYVDGSSFDPQRR	0	Unmodified	2174.0029	0.0028601316	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	67.216	66.448	3	2.9601E-06	58921	160511_QHF_FH_JSI10i_2	82.482	71.182			1.1687	1.2199	28.904	7	0	Median	1.4286	1.2565	NaN	1	0	Median	1.0224	1.2139	1.4877	2	0	Median	1.2088	1.1578	7.3951	2	0	Median	1.276	1.3621	68.375	2	0	Median	846110000	400200000	445910000	127060000	54168000	72893000	313730000	159330000	154400000	295510000	135710000	159800000	109810000	50993000	58817000	241	5474	230	1325;1326;1327;1328;1329;1330;1331	1761;1762;1763;1764;1765;1766;1767;1768;1769;1770	1768			9	
AAFGLSEAGFNTACVTK	1	Unmodified	1742.8298	0.82977013	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	3	4	70.594	69.856	2;3	1.5506E-73	60486	160511_QHF_FH_JSI12i_3	203.82	189.4			0.89294	0.93382	31.777	9	5	Median	0.90438	0.78537	24.485	2	2	Median	0.89294	1.1059	NaN	1	0	Median	0.85435	0.81855	9.1127	3	2	Median	1.1034	1.2385	34.12	3	1	Median	545230000	284900000	260330000	75955000	39795000	36160000	59690000	36575000	23115000	265810000	136090000	129720000	143770000	72434000	71340000	242	1367	231	1332;1333;1334;1335;1336;1337;1338;1339;1340;1341	1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784	1784			14	
AAFITYLQAK	1	Unmodified	1124.623	0.62299547	4256	Q96T58	SPEN	Msx2-interacting protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.929	64.638	2	0.012039	55788	160511_QHF_FH_JSI12i_3	55.549	41.343			1.1514	1.1509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1514	1.1509	NaN	1	1	Median	54273000	27643000	26630000	0	0	0	0	0	0	0	0	0	54273000	27643000	26630000	243	4256	232	1342	1785	1785			1	
AAFKELQSTFK	2	Acetyl (K)	1310.6871	0.68705229	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4		1	2	1	1	71.949	61.311	2	0.00014891	31756	160513_QHF_FH_JSI9Kac_5	93.258	64.859			16.231	18.781	51.281	5	5	Median	9.3562	7.8144	NaN	1	1	Median	16.282	19.072	2.1731	2	2	Median	13.284	13.216	NaN	1	1	Median	27.62	31.107	NaN	1	1	Median	23822000	1507500	22314000	2792000	336760	2455200	7344100	413720	6930400	8861500	617540	8244000	4824200	139500	4684700	244	3998	233	1343;1344;1345;1346;1347	1786;1787;1788;1789;1790;1791;1792	1786	3022		7	
AAFKEPK	2	Acetyl (K)	831.44905	0.44905385	2201	Q03111	MLLT1	Protein ENL	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	13.4	0.49						3	2			1	2		2	25.033	15.021	2	0.001608	5691	160513_QHF_FH_JSI9Kac_3	111.01	61.649			0.86155	0.96891	12.797	5	0	Median	1.1714	0.98389	NaN	1	0	Median	0.8805	0.97272	0.55499	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77333	0.80947	15.229	2	0	Median	1669600000	871440000	798210000	321070000	155550000	165520000	689160000	365320000	323840000	0	0	0	659410000	350570000	308850000	245	2201	234	1348;1349;1350;1351;1352	1793;1794;1795;1796;1797;1798;1799;1800	1795	2322		8	
AAFLNFFR	0	Unmodified	984.51814	0.51813647	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.586	75.343	2	0.00077028	42601	160513_QHF_FH_JSI10Kac_6	115.78	84.72			0.9375	0.9709	6.1171	4	2	Median	1.2304	1.0529	NaN	1	0	Median	0.81813	0.93988	NaN	1	1	Median	0.95511	0.92132	NaN	1	0	Median	0.92022	1.003	NaN	1	1	Median	112120000	53964000	58159000	22127000	7456600	14671000	58661000	30974000	27687000	18888000	8524100	10364000	12447000	7009600	5437500	246	2907	235	1353;1354;1355;1356	1801;1802;1803	1803			3	
AAFLQYCR	0	Unmodified	1027.4909	0.49093544	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.75	39.554	2	0.04478	33713	160511_QHF_FH_JSI12i_3	47.067	8.8289			1.0091	1.0195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	1.0195	NaN	1	1	Median	26249000	12050000	14198000	0	0	0	0	0	0	0	0	0	26249000	12050000	14198000	247	3765	236	1357	1804	1804			1	
AAFNSGK	1	Unmodified	693.34459	0.34458878	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.22	4	6	4		1	3	5	4	3	5	9	8	8	7.2675	2.3916	2	4.9638E-05	2714	160513_QHF_FH_JSI10Kac_4	126.24	69.733			0.94608	0.95599	44.05	26	4	Median	2.4838	2.3663	95.577	4	2	Linear	0.76763	0.85617	27.825	8	0	Median	1.04	1.0352	12.964	8	0	Median	0.87388	0.90416	51.306	6	2	Median	158770000000	65693000000	93080000000	32751000000	11458000000	21293000000	18583000000	8669700000	9912800000	57048000000	25611000000	31437000000	50391000000	19954000000	30437000000	248	812	237	1358;1359;1360;1361;1362;1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387	1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847;1848	1818			44	
AAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGK	2	Unmodified	3982.891	0.89099677	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	98.443	90.613	3;4;5	3.6858E-151	51323	160513_QHF_FH_JSI9Kac_6	255.9	247.2			0.69617	0.76483	16.422	5	0	Median	0.74551	0.63018	9.2111	2	0	Median	0.64714	0.76663	0.33187	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85429	0.91604	NaN	1	0	Median	3118200000	1817200000	1301000000	1459900000	819530000	640340000	1501200000	914070000	587090000	0	0	0	157190000	83630000	73561000	249	812	238	1388;1389;1390;1391;1392	1849;1850;1851;1852;1853;1854;1855;1856	1849			7	
AAFQKQNDTPK	2	Acetyl (K)	1288.6412	0.64116473	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		30.084	21.555	2	0.0018488	13223	160513_QHF_FH_JSI11Kac_3	80.239	55.463			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1960200	1960200	0	0	0	0	0	0	0	1960200	1960200	0	0	0	0	250	1580	239	1393	1857	1857	1596		1	
AAFQPEANPSHLTLNTALVESEDL	0	Unmodified	2566.2551	0.25511165	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	93.985	93.644	3	0.022075	85082	160511_QHF_FH_JSI11i_1	24.207	21.326			1.0397	1.0115	7.163	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.116	1.064	NaN	1	0	Median	0.96864	0.96153	NaN	1	0	Median	44223000	22789000	21434000	0	0	0	0	0	0	29952000	15390000	14562000	14270000	7398300	6872000	251	3805	240	1394;1395	1858	1858			1	
AAFQSLLDAQADEAVLDHPDLK	1	Unmodified	2366.1754	0.17540477	5237	Q9UBI1	COMMD3	COMM domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	91.183	91.15	3;4	5.2495E-37	78952	160511_QHF_FH_JSI12i_3	189.11	175.24			0.79825	1.0049	19.001	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81449	0.76326	26.441	2	1	Median	0.79825	0.81301	18.55	2	0	Median	284320000	134640000	149680000	0	0	0	0	0	0	122920000	57504000	65413000	161400000	77132000	84267000	252	5237	241	1396;1397;1398;1399	1859;1860;1861;1862	1860			4	
AAFQSQYK	1	Unmodified	941.46068	0.46068117	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	16.236	15.647	2	0.0046723	13091	160511_QHF_FH_JSI9i_2	67.981	55.428			0.95292	1.0505	17.455	5	0	Median	1.4757	1.2657	NaN	1	0	Median	0.82293	1.0098	26.945	2	0	Median	0.93734	0.94402	NaN	1	0	Median	0.95292	1.0505	NaN	1	0	Median	323130000	159880000	163250000	65909000	27401000	38507000	125760000	67149000	58615000	72020000	36094000	35926000	59443000	29237000	30206000	253	3377	242	1400;1401;1402;1403;1404	1863;1864;1865;1866;1867;1868	1865			6	
AAFQYGIK	1	Unmodified	896.4756	0.47560295	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	37.051	36.241	2	0.0076669	30922	160511_QHF_FH_JSI12i_2	58.819	40.043			1.8403	1.641	47.082	5	0	Median	1.9323	1.641	NaN	1	0	Median	1.8403	2.2354	NaN	1	0	Median	0.99027	0.97288	45.568	2	0	Median	1.9309	2.1716	NaN	1	0	Median	255810000	108600000	147210000	51646000	17360000	34286000	57854000	24673000	33181000	111870000	54416000	57450000	34449000	12153000	22296000	254	2353	243	1405;1406;1407;1408;1409	1869;1870;1871;1872	1869			4	
AAFTAFEEAQLPR	0	Unmodified	1449.7252	0.72522871	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	3	9	3							4	3	3	5	70.222	69.476	2;3	2.0172E-65	61186	160511_QHF_FH_JSI9i_2	209.97	163.5			0.98977	1.0656	27.145	14	2	Median	1.2534	1.0671	46.567	3	2	Plateau	0.89533	1.1075	12.67	3	0	Plateau	1.077	1.0885	5.9133	3	0	Plateau	0.987	1.0923	19.845	5	0	Median	1314300000	676970000	637320000	210350000	97450000	112900000	267290000	141600000	125690000	459030000	239870000	219160000	377630000	198050000	179580000	255	4014	244	1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424	1873;1874;1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893	1884			20	
AAFTAGR	0	Unmodified	692.36057	0.36057319	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	10.45	10.27	2	0.012437	7642	160511_QHF_FH_JSI12i_3	69.383	26.317			0.80176	0.82467	11.738	3	0	Median	NaN	NaN	NaN	0	0	Median	0.62314	0.69987	NaN	1	0	Median	0.953	0.8786	NaN	1	0	Median	0.80176	0.82467	NaN	1	0	Median	561260000	310620000	250640000	0	0	0	131830000	84761000	47073000	149750000	70385000	79370000	279670000	155470000	124200000	256	5317	245	1425;1426;1427	1894;1895;1896	1896			3	
AAFTVSLDPGPLEQFPHSMEPQLR	0	Unmodified	2666.3163	0.31627212	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	100.32	100.27	3	1.2342E-16	87019	160511_QHF_FH_JSI12i_3	123.14	108.38			1.1255	1.156	63.837	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0061	1.2422	NaN	1	0	Median	2.3888	2.2203	102.99	2	1	Median	1.0007	1.0787	9.7858	2	0	Median	601130000	261000000	340130000	0	0	0	70481000	37815000	32666000	254540000	87556000	166990000	276110000	135630000	140480000	257	5365	246	1428;1429;1430;1431;1432	1897;1898;1899;1900;1901;1902;1903;1904	1904			8	
AAFTVSLDPGPLEQFPHSMEPQLR	0	Oxidation (M)	2682.3112	0.31118674	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	90.188	90.122	3	2.4679E-05	78222	160511_QHF_FH_JSI12i_3	55.734	52.46			1.1437	1.1412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1437	1.1412	NaN	1	0	Median	42793000	21011000	21781000	0	0	0	0	0	0	0	0	0	42793000	21011000	21781000	258	5365	246	1433	1905;1906	1906		2642	2	
AAFVAYALAFPR	0	Unmodified	1295.7026	0.70264277	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	3	3	87.141	81.446	2;3	2.7687E-39	42574	160513_QHF_FH_JSI11Kac_6	189.14	167.63			0.99305	1.0118	8.1897	12	0	Median	1.3339	1.1463	7.5405	3	0	Plateau	0.85618	1.0006	5.7299	3	0	Median	1.0941	1.0422	7.5224	3	0	Median	0.98775	1.0377	9.5422	3	0	Plateau	9856500000	4787400000	5069100000	2134400000	920780000	1213600000	3508500000	1878700000	1629800000	3004100000	1374000000	1630100000	1209500000	614010000	595450000	259	3167	247	1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444;1445	1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931	1911			25	
AAFVLPEFAR	0	Unmodified	1119.6077	0.60767975	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							2	4	3	3	78.859	78.184	2	9.2288E-06	69832	160511_QHF_FH_JSI11i_3	105.57	54.961			0.971	1.0065	9.0998	10	2	Median	1.2692	1.0626	6.6789	2	0	Median	0.84032	0.99954	5.095	3	1	Median	0.99724	0.98242	7.267	3	1	Median	1.0373	1.0953	20.775	2	0	Median	1818900000	884580000	934330000	311890000	142990000	168900000	333850000	165490000	168350000	688090000	338580000	349510000	485080000	237520000	247560000	260	1163	248	1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457	1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960	1933			29	
AAFVSEQQQK	1	Unmodified	1134.5669	0.56693715	1269	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		22.426	14.757	2	0.0080973	9919	160513_QHF_FH_JSI11Kac_4	59.245	33.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	261	1269	249	1458	1961	1961			1	
AAFYHQPWAQEAVGR	0	Unmodified	1729.8325	0.83248775	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				51.539	49.941	3	0.00035183	40941	160511_QHF_FH_JSI9i_3	46.66	34.514			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	262	3908	250	1459	1962	1962			1	
AAGAAEAAVAAVEEVGSAGQFEELLR	0	Acetyl (Protein N-term)	2557.266	0.26601069	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.799	5	4	3							2	3	4	3	103.69	103.6	2;3	4.4922E-100	94206	160511_QHF_FH_JSI12i_1	372.64	352.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	263	595	251	1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471	1963;1964;1965;1966;1967;1968;1969;1970;1971;1972;1973;1974	1969			12	
AAGAALR	0	Unmodified	628.36566	0.36565857	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.2917	5.1866	2	0.041662	2991	160511_QHF_FH_JSI11i_1	49.211	17.632			0.010813	0.010451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.010813	0.010451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	487300000	484910000	2386500	0	0	0	0	0	0	487300000	484910000	2386500	0	0	0	264	2397	252	1472	1975	1975			1	
AAGAGAAKR	1	Acetyl (K)	813.4457	0.4456998	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		5.9351	-2.8043	2	0.034097	1936	160513_QHF_FH_JSI10Kac_4	58.981	35.009			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	265	1097	253	1473;1474	1976;1977	1976			2	
AAGAGKVTK	2	Unmodified	801.47085	0.47085192	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	4.5541	4.2594	2	0.00017869	2032	160511_QHF_FH_JSI9i_3	104.2	48.67			0.75128	0.87901	38.64	3	0	Median	0.59387	0.47666	NaN	1	0	Median	0.75128	0.87901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97796	0.97403	NaN	1	0	Median	572080000	413120000	158960000	230190000	173360000	56831000	280920000	205300000	75626000	0	0	0	60965000	34460000	26505000	266	2072	254	1475;1476;1477	1978;1979;1980	1980			3	
AAGAGKVTK	2	Acetyl (K)	843.48142	0.48141661	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.7					1	3	3				2	3	2	11.555	3.8109	2	0.0001586	4491	160513_QHF_FH_JSI12Kac_3	111.95	52.966			0.67397	0.72724	26.033	7	0	Median	NaN	NaN	NaN	0	0	Median	0.78787	0.9335	0.96758	2	0	Median	0.51518	0.58448	18.092	3	0	Plateau	0.66951	0.73742	1.9664	2	0	Median	200160000	120600000	79555000	0	0	0	58208000	35571000	22636000	65881000	42563000	23318000	76070000	42469000	33601000	267	2072	254	1478;1479;1480;1481;1482;1483;1484	1981;1982;1983;1984;1985;1986;1987;1988;1989	1985	2143		9	
AAGALLNGPPQFSTAPEIK	1	Unmodified	1880.9996	0.99961265	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	75.978	75.345	2	7.7486E-11	65059	160511_QHF_FH_JSI12i_2	106.01	91.131			0.77856	0.76298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77856	0.76298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13362000	9318300	4044200	0	0	0	0	0	0	13362000	9318300	4044200	0	0	0	268	488	255	1485;1486;1487;1488	1990;1991;1992;1993	1991			4	
AAGASDVVLYK	1	Unmodified	1092.5815	0.58152458	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.24	5					3	3			2	3	4	2	42.303	36.661	2	1.6838E-07	32761	160511_QHF_FH_JSI11i_1	123.35	91			1.1882	1.1504	24.323	11	5	Median	1.4951	1.2022	9.6978	2	2	Median	1.0016	1.1504	13.875	3	1	Plateau	1.1241	1.0932	36.64	4	2	Median	0.88673	0.95502	0.93963	2	0	Median	1497400000	750760000	746680000	478250000	200310000	277940000	327080000	177750000	149340000	402820000	209690000	193130000	289290000	163020000	126270000	269	4982	256	1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499	1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006	1995			13	
AAGCNIPVASVAAGFPAGQTHLK	1	Unmodified	2236.1423	0.14227092	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								3	2	1	69.249	68.574	3	4.0179E-08	61196	160511_QHF_FH_JSI11i_3	76.015	70.435			0.96339	1.1772	38.276	5	2	Median	NaN	NaN	NaN	0	0	Median	0.96339	1.1772	45.321	3	2	Median	0.83394	0.77183	NaN	1	0	Median	1.2046	1.2739	NaN	1	0	Median	223810000	107300000	116510000	0	0	0	76515000	39346000	37169000	88325000	43251000	45074000	58969000	24703000	34265000	270	5555	257	1500;1501;1502;1503;1504;1505	2007;2008;2009;2010;2011;2012;2013;2014	2008			7	
AAGDGDVK	1	Acetyl (Protein N-term)	773.35555	0.35554739	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	1	0	0			By MS/MS	By MS/MS	11	0				2								1	1	10.727	3.2145	2	0.016996	3206	160513_QHF_FH_JSI11Kac_1	35.295	26.055			1.1269	1.1447	3.7475	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.1148	NaN	1	0	Median	1.1017	1.1754	NaN	1	0	Median	4493200	2007000	2486300	0	0	0	0	0	0	2418700	1021400	1397300	2074500	985510	1089000	271	262	258	1506;1507	2015;2016	2016			2	
AAGDGGSGPPEK	1	Unmodified	1041.4727	0.47270242	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.2702	5.6637	2	0.008922	3441	160511_QHF_FH_JSI9i_1	48.44	16.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	272	482	259	1508	2017	2017			1	
AAGDTTVIENSDVSPETESSEK	1	Unmodified	2265.0132	0.013209626	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					2	2	3	2	41.963	40.359	2;3	1.3673E-57	35651	160511_QHF_FH_JSI9i_1	269.26	254.57			1.0054	0.97012	11.597	9	1	Median	1.052	0.87022	2.8905	2	0	Median	0.85103	1.0032	2.6439	2	0	Median	1.0375	1.0192	13.526	3	1	Median	0.88714	0.91101	8.891	2	0	Median	817730000	407360000	410370000	179980000	87631000	92348000	187620000	95752000	91866000	227160000	112300000	114860000	222980000	111680000	111290000	273	3328	260	1509;1510;1511;1512;1513;1514;1515;1516;1517	2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033	2032			16	
AAGFDEIEQDLTQRFEEK	1	Unmodified	2124.9964	0.99637777	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	91.264	91.198	3	0.046531	79123	160511_QHF_FH_JSI12i_3	27.271	17.741			0.69082	0.68899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69082	0.68899	NaN	1	0	Median	26616000	15420000	11196000	0	0	0	0	0	0	0	0	0	26616000	15420000	11196000	274	728	261	1518	2034	2034			1	
AAGFERPSPVQLK	1	Unmodified	1398.7619	0.76194857	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		40.402	39.388	3	0.0028746	33007	160511_QHF_FH_JSI10i_3	46.069	31.637			1.1945	0.98476	7.014	3	0	Plateau	1.2177	0.98476	NaN	1	0	Median	0.85717	0.99425	NaN	1	0	Median	1.1945	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	411880000	197120000	214760000	188890000	89922000	98965000	118320000	63996000	54320000	104670000	43203000	61471000	0	0	0	275	5301	262	1519;1520;1521	2035;2036;2037;2038;2039	2037			5	
AAGFKDPLLASGTDGVGTK	2	Unmodified	1803.9367	0.93667805	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	55.834	55.27	2;3	2.2159E-11	47553	160511_QHF_FH_JSI12i_3	139.11	127.34			0.94995	0.99012	25.396	7	3	Median	0.93952	0.81645	NaN	1	0	Median	1.1659	1.359	24.642	2	0	Median	0.88509	0.85665	20.477	2	2	Median	1.0273	1.0128	9.5242	2	1	Median	2259600000	1134900000	1124700000	123070000	54885000	68189000	248970000	129110000	119860000	961260000	515680000	445580000	926270000	435180000	491080000	276	1205	263	1522;1523;1524;1525;1526;1527;1528;1529	2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051	2050			12	
AAGFNVLR	0	Unmodified	846.47119	0.47118627	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	39.866	39.061	2	0.0062065	32682	160511_QHF_FH_JSI10i_3	63.287	20.287			0.92686	0.99441	6.8097	4	0	Linear	1.2564	1.03	NaN	1	0	Median	0.82145	0.92098	NaN	1	0	Median	0.98637	0.9177	NaN	1	0	Median	0.87094	0.87792	NaN	1	0	Median	466080000	238770000	227310000	140720000	63155000	77562000	138470000	77827000	60639000	100520000	51724000	48794000	86376000	46061000	40315000	277	2291	264	1530;1531;1532;1533	2052;2053	2053			2	
AAGFSSSTTSTSWEGNR	0	Unmodified	1744.7653	0.76525562	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.567	1	6	2							2	2	3	2	37.981	37.36	2	1.7013E-53	32795	160511_QHF_FH_JSI11i_3	225.23	199.75			1.009	1.0321	7.5126	7	1	Median	1.2277	1.0321	NaN	1	0	Median	0.92823	1.1032	6.895	2	0	Median	1.0572	1.0028	10.638	2	1	Median	0.93329	0.97703	3.7602	2	0	Median	181870000	97785000	84084000	23094000	11184000	11910000	58003000	30867000	27136000	51704000	27175000	24528000	49068000	28559000	20510000	278	3267	265	1534;1535;1536;1537;1538;1539;1540;1541;1542	2054;2055;2056;2057;2058;2059;2060;2061;2062;2063;2064;2065;2066;2067;2068	2054			15	
AAGGDHGSPDSYR	0	Acetyl (Protein N-term)	1330.5538	0.55380628	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.615	13.177	2	2.2069E-05	10817	160511_QHF_FH_JSI12i_1	138.76	136.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	279	1359	266	1543;1544;1545;1546	2069;2070;2071;2072	2070			4	
AAGGDHGSPDSYRSPLASR	0	Acetyl (Protein N-term)	1941.8929	0.89291575	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	3	3	2	31.998	31.362	3	2.3161E-14	26579	160511_QHF_FH_JSI11i_2	127.78	123.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	280	1359	267	1547;1548;1549;1550;1551;1552;1553;1554;1555	2073;2074;2075;2076;2077;2078;2079;2080;2081;2082	2080			10	
AAGGGAGSSEDDAQSR	0	Unmodified	1434.5971	0.59712766	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	5.3458	3.6299	2	1.8688E-97	2950	160511_QHF_FH_JSI10i_1	253.88	237.5			0.76749	0.78803	8.8303	5	1	Median	1.1089	0.91959	NaN	1	0	Median	0.71314	0.82176	NaN	1	0	Median	0.78418	0.7636	4.4547	2	1	Median	0.72393	0.74676	NaN	1	0	Median	378460000	203780000	174680000	76630000	37248000	39382000	85720000	42241000	43480000	120350000	69197000	51154000	95761000	55097000	40665000	281	4717	268	1556;1557;1558;1559;1560	2083;2084;2085;2086;2087;2088;2089;2090	2088			8	
AAGHLLK	1	Unmodified	708.42826	0.42825883	4232	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	8.1961	7.9349	2	0.0097171	5747	160511_QHF_FH_JSI9i_3	77.944	51.835			1.1532	1.1441	17.538	4	1	Median	1.1199	0.9214	NaN	1	0	Median	1.1874	1.4066	NaN	1	1	Median	1.2872	1.1875	NaN	1	0	Median	1.1117	1.1023	NaN	1	0	Median	592190000	304290000	287900000	137300000	73034000	64263000	95062000	42111000	52950000	136110000	56795000	79311000	223730000	132350000	91377000	282	4232	269	1561;1562;1563;1564	2091;2092;2093;2094	2094			4	
AAGHPGDPESQQR	0	Unmodified	1348.612	0.61198986	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.69	2	8	3				3			2	3	6	5	5.5922	3.9599	2;3	2.3443E-15	3042	160511_QHF_FH_JSI12i_2	161.17	138.53			0.96187	1.0293	11.262	16	0	Median	1.2894	1.0995	19.403	2	0	Median	0.88338	1.0909	5.6342	3	0	Median	1.0171	0.99797	15.708	6	0	Median	0.9465	1.0119	5.2396	5	0	Median	2379600000	1190100000	1189600000	403770000	192360000	211410000	502610000	267700000	234910000	661570000	326140000	335430000	811660000	403860000	407800000	283	5616	270	1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575;1576;1577;1578;1579;1580	2095;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112	2098			18	
AAGIDEQENWHEGK	1	Unmodified	1582.7012	0.7011988	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									1	2	3	26.149	25.332	2;3	3.3458E-23	21094	160511_QHF_FH_JSI11i_2	146.16	104.88			1.371	1.4395	34.106	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1323	1.1311	NaN	1	0	Median	1.66	1.8322	NaN	1	1	Median	248730000	110840000	137880000	0	0	0	0	0	0	120270000	57762000	62504000	128460000	53083000	75381000	284	1313	271	1581;1582;1583;1584;1585;1586	2113;2114;2115;2116;2117;2118;2119	2118			7	
AAGIEIQK	1	Unmodified	828.47052	0.47051757	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	22.658	21.992	2	0.0017591	18703	160511_QHF_FH_JSI9i_1	85.212	19.96			1.6174	1.3837	15.078	3	2	Plateau	1.6688	1.3837	NaN	1	0	Median	1.6174	1.8706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5306	1.6159	NaN	1	1	Median	285740000	138890000	146850000	94663000	40898000	53765000	86343000	42736000	43607000	0	0	0	104730000	55259000	49475000	285	4271	272	1587;1588;1589	2120;2121;2122	2122			3	
AAGKFASLPR	1	Acetyl (K);Acetyl (Protein N-term)	1100.5978	0.59784335	567	O75815	BCAR3	Breast cancer anti-estrogen resistance protein 3	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	76.478	68.023	2	0.0044698	33172	160513_QHF_FH_JSI10Kac_3	59.153	49.565			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	286	567	273	1590;1591;1592;1593	2123;2124;2125;2126	2126	294		4	
AAGKGDVPTK	2	Unmodified	942.51345	0.51344502	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.827	5	5	6							3	6	3	4	6.1101	5.8489	2;3	1.6936E-06	3569	160511_QHF_FH_JSI12i_3	103.31	69.223			0.99884	1.0165	19.666	16	2	Median	1.5316	1.3017	36.88	3	2	Median	0.98519	1.157	20.648	6	0	Median	1.0136	0.95234	6.3263	3	0	Median	0.97781	1.0033	12.367	4	0	Median	4863800000	2638500000	2225400000	398260000	203940000	194320000	581740000	304700000	277030000	1374800000	781250000	593520000	2509100000	1348600000	1160500000	287	2007	274	1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609	2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140	2138			14	
AAGLVSDLDADSGLTLSR	0	Unmodified	1759.8952	0.89520716	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			76.422	76.255	2	0.00044059	69144	160511_QHF_FH_JSI10i_1	65.805	42.888			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	288	4495	275	1610	2141	2141			1	
AAGNESFR	0	Unmodified	850.39333	0.39332988	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.4516	8.0086	2	0.047953	5722	160511_QHF_FH_JSI11i_2	37.727	17.029			0.85452	0.90177	5.3791	4	0	Median	1.0751	0.92527	NaN	1	0	Median	0.69557	0.83941	NaN	1	0	Median	0.928	0.94661	NaN	1	0	Median	0.78685	0.87887	NaN	1	0	Median	544110000	296280000	247830000	110460000	57628000	52828000	120230000	72415000	47817000	190090000	105070000	85025000	123330000	61162000	62165000	289	2707	276	1611;1612;1613;1614	2142	2142			1	
AAGNPGSLAAPIDHKPCSAPLEPK	2	Unmodified	2397.2111	0.21107877	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	46.523	46.402	4	3.1391E-06	41000	160511_QHF_FH_JSI11i_3	61.524	47.27			1.9051	1.8846	80.463	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1414	1.0669	NaN	1	0	Median	3.1797	3.3289	NaN	1	1	Median	80876000	38132000	42744000	0	0	0	0	0	0	66840000	36575000	30265000	14036000	1557400	12478000	290	2557	277	1615;1616	2143;2144	2143			2	
AAGPGLGNVAMGPR	0	Unmodified	1266.6503	0.65028963	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	43.204	43.088	2	0.00031524	36801	160511_QHF_FH_JSI12i_3	80.688	61.417			0.70353	0.69466	12.138	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69226	0.63752	NaN	1	0	Median	0.71499	0.75691	NaN	1	0	Median	41787000	23675000	18112000	0	0	0	0	0	0	20529000	11565000	8963900	21258000	12110000	9148000	291	167	278	1617;1618	2145	2145			1	
AAGPISER	0	Acetyl (Protein N-term)	841.42938	0.42938104	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	6.17	5.18	3			2	1						3	2	1	26.855	22.633	2	0.0016147	20311	160511_QHF_FH_JSI11i_1	47.574	38.334			0.27327	0.26551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27327	0.26551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	268650000	215230000	53421000	0	0	0	0	0	0	268650000	215230000	53421000	0	0	0	292	2671	279	1619;1620;1621;1622;1623;1624	2146;2147;2148;2149;2150;2151	2146			6	
AAGPSLSHTSGGTQSK	1	Unmodified	1484.7219	0.72193424	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.23		4	7					2	1	4	5	3	2	10.236	8.1178	2;3	1.876E-116	6725	160511_QHF_FH_JSI11i_3	273.04	240.44			0.95651	0.97543	14.284	14	0	Median	1.1097	0.9644	23.02	4	0	Median	0.8752	1.0535	8.1219	5	0	Median	1.0237	0.99458	4.8545	3	0	Plateau	0.83274	0.84677	6.422	2	0	Median	1800800000	916170000	884590000	264110000	123140000	140980000	435780000	244840000	190940000	637110000	298480000	338630000	463760000	249710000	214050000	293	1293	280	1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638	2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170	2152			19	
AAGQGDMRQEPK	1	Unmodified	1286.6037	0.60373336	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	6.8708	6.6121	2;3	0.0015648	4138	160511_QHF_FH_JSI12i_3	71.349	51.562			0.94328	0.90842	27.33	10	0	Median	1.1149	0.96276	14.868	2	0	Median	0.7979	0.94747	18.289	2	0	Median	1.0004	0.94469	36.227	3	0	Median	0.86677	0.87353	38.038	3	0	Median	434300000	214540000	219760000	73415000	33157000	40258000	81049000	36488000	44561000	115730000	58627000	57107000	164100000	86265000	77835000	294	2116	281	1639;1640;1641;1642;1643;1644;1645;1646;1647;1648	2171;2172;2173;2174;2175;2176;2177;2178	2178			8	
AAGSGELGVTMK	1	Unmodified	1119.5594	0.55940893	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								2	1	1		32.139	31.146	2	2.1036E-05	27764	160511_QHF_FH_JSI11i_1	89.9	73.248			0.76022	0.76964	28.293	2	1	Median	1.1137	0.9401	NaN	1	1	Median	0.51893	0.63009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105170000	54991000	50180000	53141000	26648000	26494000	52030000	28344000	23687000	0	0	0	0	0	0	295	512	282	1649;1650;1651;1652	2179;2180;2181;2182;2183	2179			5	
AAGSPSSSDQDEK	1	Unmodified	1277.5372	0.53715317	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.2074	4.8919	2	3.8244E-53	2867	160511_QHF_FH_JSI12i_1	221.32	174.85			0.76175	0.9074	6.035	4	0	Linear	1.0706	0.87496	NaN	1	0	Median	0.71018	0.8346	NaN	1	0	Median	0.96934	0.94587	NaN	1	0	Median	0.89694	0.94104	NaN	1	0	Median	476770000	247190000	229570000	84100000	38529000	45572000	146120000	85859000	60263000	123150000	61104000	62045000	123400000	61702000	61694000	296	5646	283	1653;1654;1655;1656	2184;2185;2186;2187;2188;2189	2187			6	
AAGSPSSSDQDEKLPGQDESTAGTSEQNDILK	2	Unmodified	3261.4757	0.47568171	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.691	47.011	3	1.1039E-22	42450	160511_QHF_FH_JSI11i_1	118.05	100.69			0.52459	0.52252	42.45	4	4	Median	1.3789	1.1449	NaN	1	1	Median	0.37989	0.44733	NaN	1	1	Median	0.54114	0.5244	NaN	1	1	Median	0.50855	0.52064	NaN	1	1	Median	274870000	145140000	129730000	56963000	16157000	40806000	88896000	56973000	31923000	60237000	34059000	26178000	68776000	37951000	30825000	297	5646	284	1657;1658;1659;1660	2190;2191;2192;2193;2194;2195;2196;2197	2191			8	
AAGTAAALAFLSQESR	0	Acetyl (Protein N-term)	1604.8158	0.81583463	547	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	5.6	4							1		1	1	2	1	100.21	98.074	2	4.5412E-148	92060	160511_QHF_FH_JSI12i_1	340.93	324.26			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	298	547	285	1661;1662;1663;1664;1665	2198;2199;2200;2201;2202	2199			5	
AAGTDGSDFQHR	0	Unmodified	1260.5483	0.54832698	3548	Q8N5M9	JAGN1	Protein jagunal homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	5	4	2	8.9927	8.6261	2;3	2.8314E-31	6231	160511_QHF_FH_JSI12i_2	187.64	165.51			1.0247	1.126	7.9494	12	1	Median	1.3581	1.1505	0.74379	2	0	Median	0.9467	1.1296	7.1704	4	1	Median	1.0641	1.1271	5.1007	4	0	Linear	0.85144	0.95561	2.2675	2	0	Median	1565800000	786420000	779330000	266600000	119130000	147470000	429120000	213410000	215710000	594230000	310900000	283330000	275810000	142980000	132830000	299	3548	286	1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678	2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223	2207			20	
AAGTEGPFQEVDGVATTR	0	Unmodified	1804.8592	0.85915601	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	56.538	56.067	2	8.3388E-24	49838	160511_QHF_FH_JSI9i_1	140.31	108.43			0.96885	1.0583	23.265	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0721	1.2533	NaN	1	1	Median	1.0806	1.0279	32.297	2	1	Median	0.87554	0.89359	NaN	1	0	Median	125270000	65416000	59852000	0	0	0	38054000	15076000	22978000	55293000	32262000	23031000	31921000	18078000	13843000	300	971	287	1679;1680;1681;1682;1683	2224;2225;2226;2227;2228;2229	2229			6	
AAGTLYTYPENWR	0	Acetyl (Protein N-term)	1582.7416	0.74160705	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	5.95	4	2			1	3	2			1	4	3	4	80.349	75.588	2	1.1669E-33	71514	160511_QHF_FH_JSI10i_1	232.88	218.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	301	1284	288	1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695	2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245	2237			16	
AAGTLYTYPENWRAFK	1	Acetyl (Protein N-term)	1928.9421	0.94209778	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	1	0	1	By MS/MS			By MS/MS	2	0		2								1			1	84.504	83.688	2	2.0462E-07	72222	160511_QHF_FH_JSI12i_2	123.8	110.6			0.093127	0.10526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.093127	0.10526	NaN	1	1	Median	20535000	11067000	9468700	9277000	0	9277000	0	0	0	0	0	0	11258000	11067000	191720	302	1284	289	1696;1697	2246;2247	2246			2	
AAGTSSYWEDLRK	1	Acetyl (Protein N-term)	1524.7209	0.72087161	665	O95249	GOSR1	Golgi SNAP receptor complex member 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		1.8	0.4	1	4								2	2	1		59.875	59.191	2	1.1005E-09	52007	160511_QHF_FH_JSI9i_2	102.52	84.659			0.83987	0.92927	102.89	4	2	Median	6.1092	5.1699	NaN	1	1	Median	0.54434	0.64834	47.902	2	1	Median	0.9448	0.94924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199760000	96630000	103130000	29433000	2553400	26880000	101630000	62012000	39617000	68701000	32065000	36636000	0	0	0	303	665	290	1698;1699;1700;1701;1702	2248;2249;2250;2251;2252;2253	2250			6	
AAGVEAAAEVAATEIK	1	Acetyl (Protein N-term)	1541.7937	0.7937022	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	2.89	5		4	1						3	2	2	3	99.916	98.959	2	3.8192E-81	91390	160511_QHF_FH_JSI11i_1	132.32	103.63			0.8269	0.84086	228.23	9	3	Median	1.1194	0.89126	416.99	3	2	Median	0.19228	0.2216	182.28	2	1	Median	0.83852	0.79441	27.068	2	0	Median	0.87376	0.90639	10.613	2	0	Median	11415000000	6465000000	4950100000	4104800000	2067500000	2037300000	1422400000	1279200000	143250000	3014600000	1528700000	1485900000	2873200000	1589600000	1283600000	304	1765	291	1703;1704;1705;1706;1707;1708;1709;1710;1711;1712	2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267	2256			14	
AAGVLEGALGPHVVTNLYLYPIK	1	Unmodified	2394.3311	0.33111755	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2	0		3								1	1		1	100.67	100.55	3	4.1571E-11	86460	160511_QHF_FH_JSI12i_2	99.569	78.754			0.95493	0.62344	34.071	3	1	Plateau	1.1842	1.0037	NaN	1	0	Median	0.95493	1.1839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54331	0.61491	NaN	1	0	Median	98261000	49716000	48545000	23350000	8138900	15211000	28183000	16173000	12010000	0	0	0	46728000	25404000	21324000	305	4052	292	1713;1714;1715	2268;2269	2268			2	
AAGVNVEPFWPGLFAK	1	Unmodified	1701.8879	0.88787736	835	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.48	5.31	7	8	9						5	7	7	8	7	99.809	98.206	2;3	3.8035E-98	83873	160511_QHF_FH_JSI10i_3	264.84	216.4			0.95449	0.98585	16.599	28	3	Median	1.1935	1.005	32.465	6	1	Median	0.85968	0.98599	9.738	7	0	Median	1.0153	0.9918	8.3812	8	2	Median	0.91209	0.91143	8.2586	7	0	Median	71505000000	35672000000	35832000000	8343200000	3863200000	4480000000	16344000000	8847900000	7496300000	21239000000	10257000000	10982000000	25578000000	12704000000	12875000000	306	835	293	1716;1717;1718;1719;1720;1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744	2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317;2318	2284			49	
AAGVVLEMIR	0	Unmodified	1057.5954	0.59540051	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	65.606	64.786	2	2.0362E-09	53264	160511_QHF_FH_JSI9i_3	131.06	103.18			0.94498	0.97829	19.477	4	0	Median	1.3329	1.0664	NaN	1	0	Median	0.88544	1.0339	NaN	1	0	Median	1.0085	0.9257	NaN	1	0	Median	0.68183	0.69537	NaN	1	0	Median	1037700000	543870000	493840000	200620000	89069000	111550000	242110000	132380000	109730000	349740000	173450000	176290000	245230000	148960000	96268000	307	5487	294	1745;1746;1747;1748	2319;2320;2321	2321			3	
AAGYDLYSAYDYTIPPMEK	1	Unmodified	2166.982	0.98197326	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	4	3	2	87.33	86.95	2;3	5.5702E-52	79077	160511_QHF_FH_JSI12i_1	253.15	227.81			1.1965	1.1734	24.325	11	10	Median	1.3674	1.1266	5.7497	2	2	Median	0.94607	1.1105	36.374	4	4	Median	1.3656	1.3457	21.735	3	2	Plateau	1.2243	1.2837	2.1699	2	2	Median	1284800000	581810000	702950000	189560000	77753000	111810000	454740000	235870000	218870000	378860000	154920000	223940000	261590000	113270000	148330000	308	1402	295	1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759	2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347	2330			26	
AAGYNFYGTER	0	Unmodified	1247.5571	0.55710075	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	35.959	35.016	2	5.7279E-07	29690	160511_QHF_FH_JSI12i_2	113.62	93.102			0.91118	0.88322	18.797	4	1	Median	1.0389	0.90657	NaN	1	0	Median	0.61502	0.73964	NaN	1	1	Median	1.179	1.1626	NaN	1	0	Median	0.79914	0.86047	NaN	1	0	Median	140360000	71606000	68758000	27288000	11152000	16135000	25427000	15461000	9966100	55995000	27201000	28794000	31655000	17792000	13863000	309	4816	296	1760;1761;1762;1763	2348;2349;2350;2351;2352;2353;2354	2349			7	
AAHASADLPEASSK	1	Unmodified	1353.6525	0.6524577	2903	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	14.169	14.242	3	0.0069407	11067	160511_QHF_FH_JSI12i_3	28.727	25.647			0.73803	0.76557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73803	0.76557	NaN	1	0	Median	22254000	10528000	11726000	0	0	0	0	0	0	0	0	0	22254000	10528000	11726000	310	2903	297	1764	2355	2355			1	
AAHESKMIEK	2	Acetyl (K)	1184.586	0.58595803	686	O95373	IPO7	Importin-7	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		19.594	10.163	3	0.014428	7947	160513_QHF_FH_JSI11Kac_5	53.569	37.036			0.45842	0.45076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45842	0.45076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4309100	2823500	1485600	0	0	0	0	0	0	4309100	2823500	1485600	0	0	0	311	686	298	1765	2356	2356	343;344		0	
AAHFFSTLK	1	Unmodified	1020.5393	0.53926584	2857	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		46.29	36.615	3	0.0098482	20025	160513_QHF_FH_JSI11Kac_6	36.424	25.26			0.94885	0.92682	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94885	0.92682	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5936700	2615800	3320900	0	0	0	0	0	0	5936700	2615800	3320900	0	0	0	312	2857	299	1766;1767	2357;2358	2357			2	
AAHGFKGPYDFDQIK	2	Acetyl (K)	1734.8366	0.83657007	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		68.866	59.304	3	8.7177E-05	32166	160513_QHF_FH_JSI11Kac_6	89.466	78.196			0.52982	0.51635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52982	0.51635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32264000	21172000	11093000	0	0	0	0	0	0	32264000	21172000	11093000	0	0	0	313	2902	300	1768	2359;2360	2360	2710		2	
AAHGGSAASSALK	1	Acetyl (Protein N-term)	1168.5836	0.58364985	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	16.293	14.05	2	5.0978E-23	11629	160511_QHF_FH_JSI11i_1	86.014	65.389			1.1229	1.1069	17.837	4	1	Median	1.3773	1.1252	NaN	1	0	Median	0.67949	0.79877	NaN	1	1	Median	1.1111	1.0889	NaN	1	0	Median	1.1348	1.1871	NaN	1	0	Median	515340000	235020000	280310000	130080000	54631000	75445000	1440900	1168800	272200	187390000	86836000	100550000	196430000	92389000	104040000	314	618	301	1769;1770;1771;1772	2361;2362;2363;2364	2362			4	
AAHLCAEAALR	0	Unmodified	1181.5975	0.59752577	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		3	5						4	1	3	4	4	26.626	23.657	2;3	9.4056E-08	19857	160511_QHF_FH_JSI11i_3	103.18	92.894			1.1403	1.1798	25.197	10	1	Median	1.0657	0.89371	NaN	1	0	Median	0.82943	0.97257	8.5457	2	0	Median	0.89861	0.82939	35.982	3	1	Plateau	1.299	1.3876	3.6017	4	0	Median	2697300000	1365400000	1331900000	67666000	33294000	34372000	151610000	82342000	69266000	1020800000	576950000	443840000	1457200000	672840000	784390000	315	5475	302	1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784	2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377	2366			13	
AAHLMDLAGNK	1	Unmodified	1139.5757	0.5757277	3062	Q6JQN1	ACAD10	Acyl-CoA dehydrogenase family member 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.832	30.767	3	0.023409	25934	160511_QHF_FH_JSI12i_3	34.695	27.567			0.50182	0.51315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50182	0.51315	NaN	1	1	Median	41400000	31161000	10239000	0	0	0	0	0	0	0	0	0	41400000	31161000	10239000	316	3062	303	1785	2378	2378			1	
AAHLSYGR	0	Acetyl (Protein N-term)	915.45626	0.45626449	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	1	0	0			By MS/MS		2	0		1										1		22.364	22.029	2	0.0067814	18128	160511_QHF_FH_JSI11i_2	53.891	42.595			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	317	3972	304	1786	2379	2379			1	
AAHSEGNTTAGLDMR	0	Oxidation (M)	1545.6842	0.68416853	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	2.03		24	9				1			6	7	10	11	14.497	13.872	2;3	5.6809E-22	6889	160511_QHF_FH_JSI12i_3	182.07	170.91			1.0059	1.0413	25.127	32	1	Median	1.2349	1.0736	22.583	6	0	Median	0.83489	1.0171	34.959	7	0	Median	1.1075	1.0469	25.96	9	1	Median	0.97408	1.0547	20.087	10	0	Median	3023600000	1510300000	1513300000	474160000	217010000	257140000	672910000	367280000	305630000	774310000	364550000	409760000	1102200000	561450000	540750000	318	2090	305	1787;1788;1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808;1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820	2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404;2405;2406;2407;2408;2409;2410;2411;2412;2413;2414;2415;2416	2413		1746	36	
AAHSEGNTTAGLDMR	0	Unmodified	1529.6893	0.68925391	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.48	4.96	4	11	7				1	4		7	6	8	6	18.942	16.551	2;3	3.0995E-117	13802	160511_QHF_FH_JSI11i_3	337.49	324.88			0.97022	1.0158	12.606	24	0	Median	1.2937	1.088	16.184	5	0	Median	0.85267	0.99243	17.817	6	0	Median	1.0344	1.0278	8.4788	7	0	Median	0.9638	1.0087	7.4704	6	0	Median	8457900000	4217300000	4240600000	1510200000	701420000	808750000	1711700000	943080000	768630000	2794900000	1323800000	1471000000	2441200000	1249000000	1192200000	319	2090	305	1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846;1847	2417;2418;2419;2420;2421;2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447	2420			31	
AAHVFFTDSCPDALFNELVK	1	Unmodified	2280.0885	0.088504016	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	100.93	100.94	3	3.0826E-10	87545	160511_QHF_FH_JSI12i_3	117.65	110.67			1.1447	1.1239	30.239	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97685	0.90755	NaN	1	0	Median	1.3414	1.3919	NaN	1	0	Median	318800000	152110000	166680000	0	0	0	0	0	0	116070000	63033000	53041000	202720000	89080000	113640000	320	1962	306	1848;1849	2448;2449	2448			2	
AAIAFLHALWQDRR	0	Unmodified	1666.9056	0.90559311	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			79.002	71.811	4	7.8812E-12	39664	160513_QHF_FH_JSI10Kac_6	122.46	111.19			1.1692	1.1843	51.468	2	0	Median	1.9963	1.7041	NaN	1	0	Median	0.68477	0.82299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59801000	32333000	27469000	17899000	7275100	10624000	41902000	25057000	16845000	0	0	0	0	0	0	321	2925	307	1850;1851	2450;2451;2452	2452			2	
AAIAQALAGEVSVVPPSR	0	Unmodified	1734.9628	0.96283322	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	76.955	76.541	2;3	1.3919E-07	67463	160511_QHF_FH_JSI9i_2	125.61	43.692			0.92965	0.91341	9.3926	4	1	Median	1.2089	1.0641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92965	0.90774	6.4079	2	1	Median	0.85696	0.8784	NaN	1	0	Median	719890000	348020000	371870000	31185000	13785000	17400000	0	0	0	624650000	299750000	324900000	64055000	34487000	29568000	322	2801	308	1852;1853;1854;1855	2453;2454;2455;2456	2454			4	
AAIAQLNGK	1	Unmodified	884.50797	0.50796571	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	1	3	2	24.488	21.156	2	1.1103E-05	17405	160511_QHF_FH_JSI11i_2	111.04	61.386			0.69076	0.79586	30.341	6	2	Median	1.1531	0.99128	NaN	1	0	Median	0.65158	0.79065	NaN	1	0	Median	0.8985	0.90533	38.864	2	1	Median	0.56929	0.62898	34.208	2	1	Median	402660000	231550000	171110000	86325000	37854000	48471000	75782000	46526000	29256000	146470000	92503000	53964000	94087000	54667000	39420000	323	4197	309	1856;1857;1858;1859;1860;1861;1862	2457;2458;2459;2460;2461;2462;2463	2461			7	
AAIAQLNGKEVK	2	Acetyl (K)	1282.7245	0.72450043	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	51.417	41.229	2	1.1199E-23	23486	160513_QHF_FH_JSI12Kac_4	162.38	135.71			1.0535	1.0885	20.913	4	0	Median	NaN	NaN	NaN	0	0	Median	0.66249	0.78573	NaN	1	0	Median	1.0302	1.0083	NaN	1	0	Median	1.1255	1.2167	4.9079	2	0	Median	34785000	18888000	15897000	0	0	0	7513800	4308600	3205200	7153100	3592800	3560300	20118000	10987000	9131800	324	4197	310	1863;1864;1865;1866	2464;2465;2466;2467;2468;2469;2470	2470	3075		7	
AAIDWFDGK	1	Unmodified	1021.4869	0.48689592	1442;3889	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.57	4	4	4				1	3		4	3	4	5	65.905	62.658	2	4.8113E-08	57293	160511_QHF_FH_JSI12i_1	152.47	23.779			1.1032	1.1453	19.366	16	2	Median	1.0328	0.87815	17.556	4	1	Median	0.65465	0.93106	13.379	3	0	Plateau	1.2957	1.2428	5.903	4	0	Median	1.1115	1.1869	10.962	5	1	Median	8932500000	4160100000	4772400000	1385900000	647110000	738820000	1951400000	1046300000	905100000	2789600000	1247700000	1542000000	2805600000	1219100000	1586500000	325	1442;3889	311	1867;1868;1869;1870;1871;1872;1873;1874;1875;1876;1877;1878;1879;1880;1881;1882	2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495	2477			25	
AAIGLLAR	0	Unmodified	783.49667	0.49667274	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.36		4	5					1	4	3	5	3	3	46.913	42.678	2	3.6566E-16	23254	160513_QHF_FH_JSI11Kac_6	166.13	28.621			0.98141	0.98735	12.994	13	0	Median	1.2945	1.0451	9.843	3	0	Median	0.91426	1.062	16.1	4	0	Median	0.98141	0.9303	7.0795	3	0	Median	0.82549	0.91493	3.7195	3	0	Median	3662400000	1784600000	1877800000	1058800000	452750000	606090000	1042200000	521630000	520540000	919160000	465950000	453210000	642200000	344240000	297950000	326	877	312	1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896	2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510	2502			15	
AAIISAEGDSK	1	Unmodified	1060.5401	0.5400537	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	5.77	4	5	1		4	3	1	2		5	6	4	5	24.798	20.654	2	9.2352E-31	18294	160511_QHF_FH_JSI12i_1	196.88	169.62			0.86274	0.91842	22.849	18	5	Median	1.2943	1.0654	35.22	5	4	Median	0.76105	0.90315	12.448	6	0	Median	0.94545	0.92632	3.6769	3	0	Median	0.81836	0.88072	30.858	4	1	Median	8958100000	4284500000	4673600000	2559000000	991960000	1567000000	1648500000	959140000	689350000	2114900000	1098500000	1016400000	2635800000	1235000000	1400800000	327	1424	313	1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916	2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539;2540;2541	2520			31	
AAILDLEK	1	Unmodified	871.50148	0.50148335	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	48.428	47.78	2	0.016557	41366	160511_QHF_FH_JSI11i_2	49.423	19.348			1.0656	0.99242	42.674	5	0	Median	1.3872	1.1405	NaN	1	0	Median	0.78558	0.91386	NaN	1	0	Median	0.87841	0.84518	22.712	2	0	Median	2.1476	2.2349	NaN	1	0	Median	273890000	122990000	150900000	22133000	7599900	14533000	71899000	34310000	37589000	137950000	62302000	75649000	41904000	18775000	23129000	328	2627	314	1917;1918;1919;1920;1921	2542	2542			1	
AAILETAPK	1	Unmodified	912.52803	0.52803245	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.071	28.478	2	8.1931E-05	25162	160511_QHF_FH_JSI11i_1	113.71	86.744			1.7832	1.7353	28.112	4	4	Median	2.1061	1.7217	NaN	1	1	Median	1.5098	1.7489	NaN	1	1	Median	1.3861	1.3383	NaN	1	1	Median	2.5981	2.6392	NaN	1	1	Median	642930000	261360000	381570000	91066000	29741000	61325000	206480000	93351000	113130000	212990000	88736000	124260000	132390000	49530000	82862000	329	5213	315	1922;1923;1924;1925	2543;2544;2545;2546	2543			4	
AAILPTSIFLTNK	1	Unmodified	1387.8075	0.80750177	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.691	2	6	9							5	4	5	3	91.923	91.449	2;3	3.6776E-15	79268	160511_QHF_FH_JSI12i_3	156.48	145.67			1.0197	0.98333	7.3336	16	2	Median	1.2584	1.0474	7.94	4	2	Median	0.81666	0.95963	5.0793	4	0	Median	1.0426	0.97974	7.543	5	0	Median	1.0317	1.0694	9.2216	3	0	Plateau	1728400000	880160000	848250000	262850000	124180000	138670000	301070000	159550000	141510000	472420000	241490000	230930000	692070000	354930000	337140000	330	197	316	1926;1927;1928;1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942	2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579	2575			33	
AAILPTSIFLTNKK	2	Unmodified	1515.9025	0.90246479	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							3	1	1	1	78.136	77.377	2;3	4.19E-14	63608	160511_QHF_FH_JSI9i_3	128.76	115.63			0.91768	0.87628	4.016	4	4	Median	1.0876	0.89088	NaN	1	1	Median	0.73434	0.85822	NaN	1	1	Median	1.0095	0.93617	NaN	1	1	Median	0.83417	0.86191	NaN	1	1	Median	1448400000	755510000	692840000	342560000	155610000	186950000	296090000	161550000	134550000	336320000	158560000	177760000	473380000	279790000	193580000	331	197	317	1943;1944;1945;1946;1947;1948	2580;2581;2582;2583;2584;2585	2583			6	
AAIMQALWLYIK	1	Unmodified	1419.7948	0.7948286	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.792	87.389	2	2.5872E-31	49203	160513_QHF_FH_JSI11Kac_6	186.16	146.31			1.2331	1.0987	35.112	4	1	Median	1.1958	1.0137	NaN	1	0	Median	0.61402	0.72652	NaN	1	1	Median	1.2716	1.1909	NaN	1	0	Median	1.5854	1.6909	NaN	1	0	Median	494170000	242910000	251270000	97222000	42438000	54784000	100670000	66852000	33818000	197930000	95713000	102220000	98351000	37905000	60446000	332	3908	318	1949;1950;1951;1952	2586;2587;2588;2589;2590;2591;2592	2587			7	
AAITTLKYDQLGGR	1	Acetyl (K)	1547.8308	0.83075641	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.139	61.373	2	0.00042268	32848	160513_QHF_FH_JSI11Kac_5	110.86	94.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	880660	880660	0	0	0	0	0	0	0	880660	880660	0	0	0	0	333	5451	319	1953	2593	2593	3428		1	
AAIVYHTK	1	Unmodified	901.50215	0.50215205	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.51		1	8						7	5	4	4	3	13.512	9.9384	2;3	0.00059055	8562	160511_QHF_FH_JSI10i_3	72.485	54.449			0.99309	0.95975	23.268	16	4	Median	0.98925	0.86356	32.956	5	1	Median	0.79197	0.90174	17.979	4	1	Median	1.1696	1.1315	17.523	4	2	Median	0.86064	0.94649	11.565	3	0	Median	1902800000	941790000	961050000	165240000	76542000	88694000	207500000	116670000	90832000	698410000	281730000	416680000	831690000	466850000	364840000	334	3264	320	1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969	2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610	2599			16	
AAIWESQHEGPEGAR	0	Unmodified	1636.7594	0.75938238	4539	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.157	30.157	3	0.0035588	26116	160511_QHF_FH_JSI11i_3	41.554	34.933			1.1456	1.0975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1456	1.0975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30153000	15763000	14390000	0	0	0	0	0	0	30153000	15763000	14390000	0	0	0	335	4539	321	1970	2611	2611			1	
AAIYGGVEGGGTR	0	Acetyl (Protein N-term)	1248.6099	0.6098646	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	49.395	48.854	2	0.00023305	44266	160511_QHF_FH_JSI12i_1	78.655	61.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	336	5338	322	1971;1972	2612;2613	2613			2	
AAKDVFNK	2	Acetyl (K)	933.49198	0.4919813	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	36.867	27.527	2	0.0072504	16867	160513_QHF_FH_JSI11Kac_4	80.165	38.513			0.61794	0.79073	15.721	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.72234	0.84962	7.5241	2	0	Median	0.61829	0.61692	NaN	1	0	Median	0.71554	0.77613	NaN	1	0	Median	47779000	29399000	18379000	0	0	0	19884000	12372000	7511900	20016000	12571000	7445600	7877900	4456200	3421800	337	5499	323	1973;1974;1975;1976	2614;2615;2616;2617;2618	2616	3460;3461		5	
AAKDYYK	2	Unmodified	857.42832	0.42831841	5421	Q9UM82	SPATA2	Spermatogenesis-associated protein 2	yes	yes	0	0	0	1	By MS/MS				13	0						1				1				17.358	-0.45401	2	0.023508	5145	160513_QHF_FH_JSI9Kac_3	83.229	4.1128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	338	5421	324	1977	2619	2619			1	
AAKEFGVSPDK	2	Acetyl (K)	1189.5979	0.59790293	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		43.854	34.597	2	0.0062728	19602	160513_QHF_FH_JSI11Kac_3	68.132	54.136			0.055894	0.054155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.055894	0.054155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1445900	1391600	54347	0	0	0	0	0	0	1445900	1391600	54347	0	0	0	339	1283	325	1978	2620	2620	1204		1	
AAKPEQIQK	2	Unmodified	1011.5713	0.57129425	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	6.8723	6.7725	2;3	0.00012411	4275	160511_QHF_FH_JSI12i_3	111.06	70.031			1.0581	0.91213	45.481	7	3	Median	1.0812	0.91213	NaN	1	0	Median	1.1012	1.3626	NaN	1	0	Median	0.57518	0.53648	68.329	3	3	Median	0.93588	0.94675	15.768	2	0	Median	1110200000	576220000	534020000	53332000	26996000	26336000	101490000	57375000	44116000	400530000	197600000	202930000	554890000	294250000	260640000	340	4334	326	1979;1980;1981;1982;1983;1984;1985	2621;2622;2623;2624;2625;2626	2625			6	
AAKTQLAVCQQR	1	Acetyl (K)	1414.7351	0.73508189	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		13.5	0.5						1	1					2		37.732	28.516	2	6.7764E-05	17204	160513_QHF_FH_JSI11Kac_4	102.52	78.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4091600	4091600	0	0	0	0	0	0	0	4091600	4091600	0	0	0	0	341	2193	327	1986;1987	2627;2628	2628	2303		2	
AAKVFESIGK	2	Acetyl (K);Acetyl (Protein N-term)	1132.6128	0.61282471	1424	P35232	PHB	Prohibitin	no	no	1	1	0	1		By matching			13	0						1					1			86.776	78.489	2	1			NaN	NaN			0.85375	1.016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85375	1.016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2754500	1431700	1322700	0	0	0	2754500	1431700	1322700	0	0	0	0	0	0	342	1424	328	1988					0	
AAKVLEQLTGQTPVFSK	2	Acetyl (K)	1858.02	0.020013746	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		83.902	73.375	3	0.03238	38752	160513_QHF_FH_JSI11Kac_5	40.085	33.356			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	343	2038	329	1989	2629	2629	2087		1	
AAKVVPVK	2	Acetyl (K)	852.54329	0.54328858	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	0.495						4	3			1	2	2	2	32.409	22.139	2	0.0047569	5946	160513_QHF_FH_JSI9Kac_3	87.323	56.819			0.78465	0.81823	20.197	7	0	Median	1.372	1.1198	NaN	1	0	Median	0.87502	1.0362	16.898	2	0	Median	0.8109	0.80991	1.4454	2	0	Median	0.6587	0.72053	10.392	2	0	Median	100770000	50785000	49989000	43501000	18726000	24775000	20437000	11156000	9280600	12075000	6494600	5579900	24761000	14408000	10353000	344	1154	330	1990;1991;1992;1993;1994;1995;1996	2630;2631;2632;2633;2634;2635;2636;2637;2638;2639	2635	1009		10	
AALAAERK	1	Unmodified	828.48175	0.48175096	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		5.9395	5.5668	2	0.00050394	3527	160511_QHF_FH_JSI9i_3	106.36	52.802			0.90978	0.97373	18.249	5	0	Median	1.1324	0.93768	5.3354	2	0	Median	0.88353	1.0493	9.817	2	0	Median	0.73377	0.68685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	505090000	277270000	227820000	174560000	90073000	84483000	183860000	91187000	92675000	146670000	96014000	50660000	0	0	0	345	1711	331	1997;1998;1999;2000;2001	2640;2641;2642;2643;2644	2642			5	
AALADDFDTPR	0	Unmodified	1190.5568	0.5567664	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.816	43.152	2	2.5926E-05	38724	160511_QHF_FH_JSI10i_1	99.973	95.19			1.0549	1.0714	2.7897	4	0	Median	1.277	1.0682	NaN	1	0	Median	0.93302	1.1132	NaN	1	0	Median	1.0884	1.0746	NaN	1	0	Median	1.0225	1.0402	NaN	1	0	Median	692450000	335450000	357000000	145970000	62497000	83471000	184340000	100290000	84055000	177040000	83982000	93058000	185100000	88690000	96411000	346	4819	332	2002;2003;2004;2005	2645;2646;2647;2648;2649;2650;2651	2649			7	
AALADVLR	0	Unmodified	827.4865	0.48650199	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	47.944	46.955	2	0.020956	40200	160511_QHF_FH_JSI12i_2	45.335	28.371			0.763	0.79199	17.964	3	0	Median	1.0006	0.86784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.763	0.79199	NaN	1	0	Median	0.57379	0.61363	NaN	1	0	Median	175860000	88479000	87378000	42624000	23854000	18770000	0	0	0	91778000	38567000	53211000	41455000	26058000	15397000	347	4848	333	2006;2007;2008	2652;2653	2652			2	
AALADYK	1	Unmodified	750.3912	0.39120462	4661	Q9H1K1	ISCU	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.952	17.467	2	0.045285	14816	160511_QHF_FH_JSI11i_1	44.767	16.344			0.97385	1.0402	9.7889	4	0	Median	1.3786	1.116	NaN	1	0	Median	0.95055	1.1503	NaN	1	0	Median	0.99773	0.96942	NaN	1	0	Median	0.91669	0.94743	NaN	1	0	Median	292470000	136090000	156380000	50758000	22910000	27848000	81159000	40956000	40203000	87822000	39819000	48003000	72729000	32404000	40325000	348	4661	334	2009;2010;2011;2012	2654	2654			1	
AALAEITEMVAQLHGTMIK	1	Unmodified	2026.0591	0.059118143	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.54	101.55	3	7.651E-68	88223	160511_QHF_FH_JSI12i_3	232.15	218.92			0.88933	0.91342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88933	0.91342	NaN	1	0	Median	387300000	194030000	193270000	0	0	0	0	0	0	0	0	0	387300000	194030000	193270000	349	5627	335	2013	2655;2656	2655			2	
AALAFGFLDLLK	1	Unmodified	1277.7384	0.73835958	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	99.758	94.924	2	1.0536E-31	89317	160511_QHF_FH_JSI12i_3	193.82	170.4			1.042	0.93067	12.85	7	0	Median	1.1144	0.915	2.4007	2	0	Median	0.72937	0.86574	NaN	1	0	Median	0.96046	0.90905	7.6091	2	0	Median	1.1006	1.1556	5.7226	2	0	Median	1317600000	637190000	680370000	233480000	116210000	117270000	99496000	51331000	48165000	373570000	189420000	184150000	611010000	280230000	330790000	350	4250	336	2014;2015;2016;2017;2018;2019;2020	2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667	2665			11	
AALAGHPR	0	Unmodified	791.44022	0.4402205	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.4302	5.1993	2	0.0011998	3084	160511_QHF_FH_JSI10i_3	92.692	17.861			0.87321	0.83999	8.969	4	0	Median	1.0488	0.83087	NaN	1	0	Median	0.85763	1.0011	NaN	1	0	Median	0.88909	0.83942	NaN	1	0	Median	0.85532	0.84056	NaN	1	0	Median	1019000000	535790000	483180000	456290000	232090000	224200000	311600000	168250000	143350000	124170000	66566000	57609000	126900000	68882000	58021000	351	2629	337	2021;2022;2023;2024	2668;2669;2670;2671;2672;2673	2671			6	
AALAHPFFQDVTK	1	Unmodified	1443.751	0.75104953	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	54.288	54.169	2;3	1.5888E-05	46517	160511_QHF_FH_JSI12i_3	122.7	104.39			1.0578	1.0218	12.793	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2449	1.1598	16.945	2	0	Median	1.0071	1.006	1.2285	2	0	Median	527540000	274250000	253290000	0	0	0	0	0	0	219600000	115070000	104530000	307940000	159180000	148760000	352	1252	338	2025;2026;2027;2028	2674;2675;2676;2677;2678;2679	2678			5	
AALAHSEEVTASQVAATK	1	Unmodified	1782.9112	0.91119158	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.71		6	4					4		2	3	5	4	36.416	32.67	2;3	4.6106E-67	28452	160511_QHF_FH_JSI11i_3	176.17	164.9			1.1135	1.0951	22.504	11	1	Median	1.0652	0.90292	16.883	2	0	Median	0.87367	1.0466	12.569	2	0	Median	1.1135	1.0951	10.893	3	0	Median	1.274	1.3086	28.455	4	1	Median	1218600000	594720000	623900000	124940000	68737000	56201000	188380000	97787000	90589000	362570000	156130000	206440000	542740000	272060000	270670000	353	2636	339	2029;2030;2031;2032;2033;2034;2035;2036;2037;2038;2039;2040;2041;2042	2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701	2681			22	
AALAPAK	1	Unmodified	640.39081	0.39081069	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	9.8951	9.4525	2	0.02555	6780	160511_QHF_FH_JSI9i_1	54.525	20.787			0.95121	0.91994	18.616	7	0	Median	1.0677	0.89344	4.1332	2	0	Median	0.92439	1.131	NaN	1	0	Median	0.84566	0.84179	35.02	2	0	Median	0.83988	0.89185	15.069	2	0	Median	689510000	340180000	349330000	184190000	79139000	105050000	44480000	22634000	21846000	249680000	130160000	119530000	211150000	108250000	102900000	354	2409	340	2043;2044;2045;2046;2047;2048;2049	2702;2703;2704	2704			3	
AALAPLPPLPAQFK	1	Acetyl (Protein N-term)	1474.8548	0.85478632	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	101.8	101.67	2	3.0426E-05	92406	160511_QHF_FH_JSI11i_1	113.62	98.955			1.7292	1.8217	27.191	3	3	Median	1.6183	1.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3097	2.2624	NaN	1	1	Median	1.7292	1.8217	NaN	1	1	Median	609730000	174240000	435490000	280810000	89654000	191160000	0	0	0	188440000	45377000	143060000	140480000	39209000	101270000	355	4888	341	2050;2051;2052	2705;2706;2707	2705			3	
AALCAVHVIR	0	Unmodified	1108.6175	0.61753293	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		43.711	34.573	3	0.00042693	19132	160513_QHF_FH_JSI10Kac_6	74.376	60.785			0.95429	1.1459	15.484	3	1	Plateau	1.5014	1.3047	NaN	1	1	Median	0.95429	1.1459	NaN	1	0	Median	0.98136	0.95844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51927000	27931000	23996000	10041000	4639500	5401700	27826000	16243000	11583000	14060000	7048200	7011500	0	0	0	356	369	342	2053;2054;2055	2708;2709;2710;2711	2710			4	
AALCHFCIDMLNAK	1	Unmodified	1662.768	0.76803828	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	70.626	70.041	3	2.9151E-10	60646	160511_QHF_FH_JSI12i_3	141.38	130.28			0.95349	0.97771	31.492	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3037	1.5284	NaN	1	1	Median	0.91051	0.83226	NaN	1	0	Median	0.95349	0.97771	NaN	1	0	Median	198400000	113500000	84906000	0	0	0	28023000	12938000	15085000	70442000	44032000	26411000	99938000	56528000	43410000	357	1838	343	2056;2057;2058	2712;2713;2714;2715	2715			4	
AALDEAQGVGLDSTGYYDQEIYGGSDSR	0	Unmodified	2936.2948	0.29480422	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	75.181	74.633	2;3	3.1323E-21	66364	160511_QHF_FH_JSI9i_1	117.03	114.46			0.83477	0.97076	7.8421	3	0	Plateau	1.2324	1.0123	NaN	1	0	Median	0.83477	0.97076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85324	0.86968	NaN	1	0	Median	230200000	117390000	112810000	47194000	23885000	23308000	97855000	49761000	48094000	0	0	0	85147000	43740000	41407000	358	542	344	2059;2060;2061;2062	2716;2717;2718;2719;2720;2721;2722;2723;2724;2725	2725			10	
AALDGTPGMIGYGMAK	1	Unmodified	1551.7425	0.74253503	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	3	1	64.613	64.215	2	9.4669E-28	58316	160511_QHF_FH_JSI11i_1	150.06	115.68			0.87549	0.93817	38.7	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0154	1.2335	NaN	1	0	Median	0.75489	0.71357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131720000	81242000	50476000	0	0	0	65574000	33833000	31741000	66144000	47409000	18735000	0	0	0	359	927	345	2063;2064;2065;2066;2067;2068	2726;2727;2728;2729;2730;2731;2732	2726			6	
AALDSGAFQSVWVSTDHDEIENVAK	1	Unmodified	2688.2667	0.26673897	3663	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.976	84.804	3	1.6747E-05	73608	160511_QHF_FH_JSI12i_3	52.019	40.053			1.4441	1.3773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4441	1.3773	NaN	1	1	Median	31166000	12298000	18867000	0	0	0	0	0	0	0	0	0	31166000	12298000	18867000	360	3663	346	2069	2733	2733			1	
AALDSLSLFTSLGLSEQK	1	Acetyl (Protein N-term)	1921.0044	0.004423261	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	103.34	103.25	2	2.1571E-184	93868	160511_QHF_FH_JSI12i_1	184.31	160.06			1.0131	0.99783	20.026	5	1	Median	1.2854	1.0914	38.635	2	1	Median	0.82346	0.97844	NaN	1	0	Median	1.0268	1.0011	NaN	1	0	Median	0.95479	0.99783	NaN	1	0	Median	683770000	356980000	326790000	183820000	91451000	92371000	218610000	122840000	95775000	126390000	64146000	62239000	154950000	78547000	76407000	361	1609	347	2070;2071;2072;2073;2074	2734;2735;2736;2737;2738;2739;2740	2736			7	
AALEAAAAAAPER	0	Unmodified	1210.6306	0.63060004	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.679	30.349	2	0.00068272	26981	160511_QHF_FH_JSI10i_1	100.93	63.456			1.0939	1.273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0939	1.273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48438000	19199000	29239000	0	0	0	48438000	19199000	29239000	0	0	0	0	0	0	362	3325	348	2075	2741	2741			1	
AALEACHK	1	Unmodified	898.43309	0.43308621	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	5.5		2	1					1			1	2	1	6.4691	3.9589	2	0.0025026	3760	160511_QHF_FH_JSI11i_2	87.754	69.024			1.2909	1.3243	35.668	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.73909	0.89866	NaN	1	1	Median	0.96044	0.95677	56.702	2	1	Median	1.2372	1.236	NaN	1	1	Median	257050000	110880000	146170000	0	0	0	36433000	19776000	16658000	115980000	51217000	64758000	104640000	39884000	64754000	363	1006	349	2076;2077;2078;2079	2742;2743;2744;2745;2746	2742			5	
AALEALGSCLNNK	1	Unmodified	1359.6816	0.68164933	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	5.27	8	8	3				6			4	6	7	8	54.208	51.38	2;3	6.147E-99	45379	160511_QHF_FH_JSI10i_2	255.39	222.39			0.93996	0.91928	28.651	24	4	Median	0.98616	0.83196	26.772	4	2	Median	0.75929	0.91928	25.333	6	2	Median	0.90497	0.84234	12.871	7	0	Median	1.33	1.3749	17.52	7	0	Median	2375600000	1238100000	1137500000	251350000	124080000	127270000	644190000	369770000	274410000	815160000	440380000	374780000	664900000	303840000	361060000	364	1415	350	2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093;2094;2095;2096;2097;2098;2099;2100;2101;2102;2103;2104	2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768;2769;2770;2771;2772;2773;2774;2775;2776;2777;2778;2779;2780;2781;2782;2783	2780			37	
AALEALLPYTER	0	Unmodified	1345.7242	0.72416608	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		75.966	75.251	2	0.00025188	67000	160511_QHF_FH_JSI10i_2	77.379	65.889			0.96794	1.0521	8.4017	3	3	Median	1.3068	1.1289	NaN	1	1	Median	0.8547	1.0521	NaN	1	1	Median	0.96794	0.95496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117190000	51176000	66017000	35765000	14649000	21116000	31233000	15461000	15772000	50195000	21066000	29129000	0	0	0	365	2304	351	2105;2106;2107;2108	2784;2785;2786;2787;2788	2788			5	
AALEAQNALHNMK	1	Unmodified	1409.7085	0.70853279	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	34.05	33.391	2;3	2.9861E-16	28636	160511_QHF_FH_JSI12i_2	145.31	134.76			0.99646	1.0751	27.416	11	1	Median	1.3629	1.1533	0.55905	2	0	Median	0.93473	1.1447	8.8683	2	0	Median	1.0226	0.94048	15.945	3	1	Plateau	0.66763	0.70218	21.245	4	0	Median	1765900000	979720000	786230000	255000000	122320000	132680000	311490000	168190000	143310000	459430000	252600000	206830000	740020000	436610000	303410000	366	3897	352	2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119	2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;2799;2800;2801	2792			13	
AALEAQNALHNMK	1	Oxidation (M)	1425.7034	0.70344741	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	33.245	33.152	2	0.00013617	16596	160511_QHF_FH_JSI12i_3	76.465	66.233			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6746900	0	6746900	0	0	0	0	0	0	0	0	0	6746900	0	6746900	367	3897	352	2120;2121	2802;2803	2803		2330	2	
AALEAVGGTVVLE	0	Unmodified	1227.6711	0.67106787	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	76.27	75.819	2	0.00027938	68793	160511_QHF_FH_JSI10i_1	75.294	62.667			0.94149	0.97265	10.327	5	4	Median	1.3202	1.0752	NaN	1	1	Median	0.81686	0.97265	NaN	1	0	Median	1.0449	1.0208	15.592	2	2	Median	0.87394	0.89806	NaN	1	1	Median	495930000	250660000	245270000	83705000	37211000	46494000	124300000	64321000	59983000	191400000	100310000	91086000	96527000	48816000	47711000	368	1786	353	2122;2123;2124;2125;2126	2804;2805;2806;2807;2808;2809;2810	2809			7	
AALEEANGEIEK	1	Unmodified	1272.6198	0.61976058	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		28.73	28.13	2	1.3206E-12	24940	160511_QHF_FH_JSI10i_1	155.26	125.52			0.8725	0.99873	9.3553	3	0	Plateau	1.0477	0.84338	NaN	1	0	Median	0.8621	0.99873	NaN	1	0	Median	1.0112	0.98375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236080000	120750000	115330000	60568000	31859000	28709000	100880000	49654000	51222000	74631000	39233000	35398000	0	0	0	369	3583	354	2127;2128;2129	2811;2812;2813;2814;2815	2813			5	
AALEELVK	1	Unmodified	871.50148	0.50148335	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			2	3	4	2	46.47	44.526	2	0.0003612	39894	160511_QHF_FH_JSI10i_1	110.81	52.64			0.95806	0.98608	21.626	9	2	Median	0.91778	0.7706	37.39	2	0	Median	0.80234	0.9735	27.838	2	1	Median	1.0109	0.98608	13.345	3	1	Median	0.89297	0.96243	15.929	2	0	Median	1272200000	666990000	605240000	236660000	118490000	118170000	332340000	193260000	139080000	426160000	219980000	206170000	277080000	135260000	141820000	370	1012	355	2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140	2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830	2821			15	
AALEEVEGDVAELELK	1	Unmodified	1713.8673	0.86726108	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		87.907	87.668	2	2.4565E-05	79559	160511_QHF_FH_JSI10i_1	109.22	76.274			0.64082	0.68391	74.411	2	1	Median	NaN	NaN	NaN	0	0	Median	0.97953	1.1575	NaN	1	0	Median	0.41923	0.4041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22196000	12916000	9279800	0	0	0	15625000	8377300	7247200	6571400	4538800	2032600	0	0	0	371	2620	356	2141;2142	2831;2832	2832			2	
AALEEVYPDLTPEETRR	0	Unmodified	1987.9851	0.9850848	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	1	4	4	59.715	59.062	2;3	1.1511E-22	50866	160511_QHF_FH_JSI12i_3	174.95	169.85			1.0258	1.0635	15.656	10	6	Median	1.2326	1.0598	NaN	1	0	Median	0.88368	1.0734	NaN	1	0	Median	1.1833	1.1487	15.851	4	3	Median	0.8784	0.96549	18.218	4	3	Median	1661600000	798460000	863140000	180610000	75893000	104720000	256990000	128140000	128850000	641920000	295030000	346880000	582090000	299400000	282690000	372	4628	357	2143;2144;2145;2146;2147;2148;2149;2150;2151;2152	2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845	2844			13	
AALEGTATYR	0	Unmodified	1051.5298	0.52982336	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	21.072	20.457	2	1.8746E-07	16869	160511_QHF_FH_JSI12i_2	117.81	91.118			1.0034	1.0375	15.244	6	0	Median	1.274	1.0757	NaN	1	0	Median	0.73849	0.87097	17.3	2	0	Median	1.1611	1.1571	3.884	2	0	Median	0.90399	1.0007	NaN	1	0	Median	706140000	359710000	346430000	94157000	43363000	50793000	219180000	129540000	89647000	292550000	129940000	162610000	100250000	56865000	43385000	373	4965	358	2153;2154;2155;2156;2157;2158;2159	2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857	2849			12	
AALEKSLEDTK	2	Acetyl (K)	1245.6452	0.64524705	62	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	1	0	0	1				By MS/MS	13	0						1							1	47.438	38.496	2	0.00092547	21106	160513_QHF_FH_JSI12Kac_3	87.298	59.285		+	4.8735	5.2759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8735	5.2759	NaN	1	1	Median	1810800	222800	1588000	0	0	0	0	0	0	0	0	0	1810800	222800	1588000	374	62	359	2160	2858	2858	41;42		1	
AALETDENLLLCAPTGAGK	1	Unmodified	1942.967	0.9669919	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		73.515	73.32	2	3.8948E-17	66460	160511_QHF_FH_JSI10i_1	128.76	113.56			0.76969	0.85788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76969	0.85788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20022000	14865000	5156400	0	0	0	20022000	14865000	5156400	0	0	0	0	0	0	375	552	360	2161;2162;2163	2859;2860;2861	2861			3	
AALEYLGSFDHYAT	0	Unmodified	1556.7147	0.7147236	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	79.119	78.343	2	0.00028852	68908	160511_QHF_FH_JSI11i_2	103.26	91.389			0.76032	0.77602	15.252	5	5	Median	0.93853	0.77602	NaN	1	1	Median	0.53116	0.65031	NaN	1	1	Median	0.87425	0.86227	19.927	2	2	Median	0.72119	0.79455	NaN	1	1	Median	197090000	107170000	89920000	35052000	17130000	17922000	33036000	19263000	13772000	95387000	49289000	46098000	33611000	21484000	12127000	376	971	361	2164;2165;2166;2167;2168	2862;2863;2864;2865;2866	2865			5	
AALFNTR	0	Unmodified	791.42899	0.42898711	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			26.449	25.126	2	0.010529	20724	160511_QHF_FH_JSI10i_3	74.439	17.336			0.9718	0.94904	18.21	2	0	Median	1.0018	0.83438	NaN	1	0	Median	0.94269	1.0795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122880000	65356000	57527000	73601000	39136000	34466000	49283000	26221000	23062000	0	0	0	0	0	0	377	2607	362	2169;2170	2867;2868	2867			2	
AALFVSNNSR	0	Unmodified	1077.5567	0.55670682	4087	Q96GD0	PDXP	Pyridoxal phosphate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.29	6.11			4					2	1	2	3	2		33.674	28.722	2	0.0082926	15119	160513_QHF_FH_JSI10Kac_5	68.224	45.483			1.1804	1.1622	22.033	7	6	Median	1.4982	1.2426	9.4516	2	2	Median	0.89759	1.0054	18.237	3	3	Plateau	1.3301	1.2818	43.438	2	1	Median	NaN	NaN	NaN	0	0	Median	121600000	56238000	65367000	70347000	29783000	40564000	45893000	23517000	22376000	5364500	2937300	2427300	0	0	0	378	4087	363	2171;2172;2173;2174;2175;2176;2177	2869;2870;2871;2872;2873;2874;2875;2876	2876			8	
AALGEPVR	0	Unmodified	811.4552	0.45520186	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.992	10.791	2	0.056686	8291	160511_QHF_FH_JSI11i_2	44.692	3.3899			5.6643	5.7364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.6643	5.7364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59322000	5737900	53584000	0	0	0	0	0	0	59322000	5737900	53584000	0	0	0	379	5010	364	2178	2877	2877			1	
AALGEPVRLER	0	Acetyl (Protein N-term)	1251.6935	0.69353465	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	1	0	1			By MS/MS		2	0		1										1		53.537	53.014	2	0.00022272	45952	160511_QHF_FH_JSI11i_2	80.231	59.606			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	380	5010	365	2179	2878	2878			1	
AALGHLAGEAAAAPGPGTPCASR	0	Acetyl (Protein N-term)	2144.0433	0.043285158	4768	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		65.225	64.782	2	6.5643E-07	58883	160511_QHF_FH_JSI11i_1	73.296	56.179			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	381	4768	366	2180;2181	2879;2880	2879			2	
AALGPLVTGLYDVQAFK	1	Unmodified	1761.9665	0.96652161	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		101.32	101.23	3	1.8407E-12	88911	160511_QHF_FH_JSI11i_2	154.65	137.15			0.88031	0.85269	13.708	3	0	Plateau	1.016	0.86395	NaN	1	0	Median	0.88031	1.088	NaN	1	0	Median	0.83106	0.85269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	605790000	340880000	264910000	198040000	103910000	94129000	183040000	105150000	77894000	224710000	131820000	92887000	0	0	0	382	989	367	2182;2183;2184	2881;2882	2882			2	
AALGPSSQNVTEYVVR	0	Acetyl (Protein N-term)	1731.8792	0.87916317	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		76.796	76.339	2	2.87E-08	69148	160511_QHF_FH_JSI10i_1	178.71	163.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	383	1432	368	2185;2186;2187	2883;2884;2885;2886	2884			4	
AALGSPSHTFR	0	Acetyl (Protein N-term)	1184.5938	0.5938206	4111	Q96HJ9	C7orf55	UPF0562 protein C7orf55	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		37.989	37.171	2	9.1397E-07	31722	160511_QHF_FH_JSI11i_2	140.83	110.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	384	4111	369	2188;2189;2190	2887;2888;2889	2888			3	
AALGVAEAVAAPHPAEGAETAEAVELSR	0	Acetyl (Protein N-term)	2728.3668	0.36678737	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	91.535	91.143	3	1.1388E-16	82767	160511_QHF_FH_JSI12i_1	114.2	102.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	385	3382	370	2191;2192	2890;2891;2892	2891			3	
AALGVLESDLPSAVTLLK	1	Acetyl (Protein N-term)	1838.0401	0.040080486	3638	Q8NEJ9	NGDN	Neuroguidin	no	no	0	1	0	0			By matching	By matching	1	0	2											1	1	103.43	103.34	2	1			NaN	NaN			1.021	1.0237	22.411	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2454	1.1995	NaN	1	0	Median	0.83712	0.87369	NaN	1	0	Median	81461000	41688000	39773000	0	0	0	0	0	0	35449000	16377000	19072000	46012000	25311000	20700000	386	3638	371	2193;2194					0	
AALGVLR	0	Unmodified	698.44391	0.44390889	1211	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		3	0			3							1	1	1		31.605	30.672	2	0.045601	25213	160511_QHF_FH_JSI9i_3	44.611	9.5054			0.94909	1.094	14.648	3	0	Median	1.3271	1.0954	NaN	1	0	Median	0.94909	1.094	NaN	1	0	Median	0.94008	0.84942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107830000	51577000	56249000	40887000	17514000	23373000	33448000	16800000	16648000	33491000	17264000	16227000	0	0	0	387	1211	372	2195;2196;2197	2893;2894	2893			2	
AALHLYSNTLNFQISEVEPK	1	Unmodified	2273.1692	0.16919718	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		1	2	2	83.57	82.382	2;3	2.7688E-21	75125	160511_QHF_FH_JSI11i_3	197.14	171.02			0.97701	1.0333	31.841	5	5	Median	NaN	NaN	NaN	0	0	Median	0.60513	0.72786	NaN	1	1	Median	1.5573	1.4863	19.503	2	2	Median	0.9633	1.0095	3.2948	2	2	Median	551000000	238480000	312530000	0	0	0	147440000	91730000	55713000	203820000	60667000	143150000	199740000	86080000	113660000	388	1514	373	2198;2199;2200;2201;2202	2895;2896;2897;2898;2899;2900	2896			6	
AALHPPALAVLSHTPDGATQTIAWVGK	1	Unmodified	2721.4602	0.46023424	3630	Q8NDH3	NPEPL1	Probable aminopeptidase NPEPL1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	88.088	88.033	3;4	1.2359E-06	76287	160511_QHF_FH_JSI12i_3	56.681	50.52			0.82688	0.87967	7.6543	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83832	0.79344	9.6292	2	1	Median	0.82688	0.84133	6.9789	2	1	Median	178580000	97344000	81232000	0	0	0	0	0	0	77050000	41526000	35525000	101530000	55818000	45707000	389	3630	374	2203;2204;2205;2206	2901;2902;2903;2904	2902			4	
AALIMQVLQLTADQIAMLPPEQR	0	Unmodified	2549.371	0.37095023	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	0		By MS/MS			16	0									2		2			100.29	94.566	3	9.4217E-15	55664	160513_QHF_FH_JSI10Kac_6	171.85	149.22			0.97582	1.1613	4.0801	2	2	Median	NaN	NaN	NaN	0	0	Median	0.97582	1.1613	4.0801	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	284690000	150390000	134290000	0	0	0	284690000	150390000	134290000	0	0	0	0	0	0	390	1401;4636	375	2207;2208	2905;2906	2906			2	
AALIYTCTVCR	0	Unmodified	1326.6424	0.64242706	5683	Q9Y5V0	ZNF706	Zinc finger protein 706	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.833							3	3	5	1	4	4	2	54.513	44.785	2	2.9867E-07	24671	160513_QHF_FH_JSI10Kac_6	109.44	89.298			1.0011	1.1428	30.809	7	4	Median	2.4794	2.0595	NaN	1	1	Median	0.99734	1.1637	26.96	4	3	Median	1.0206	1.0032	4.3608	2	0	Median	NaN	NaN	NaN	0	0	Median	86143000	42673000	43470000	6847400	2165000	4682400	45285000	24213000	21072000	34011000	16295000	17716000	0	0	0	391	5683	376	2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219	2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917	2917			11	
AALLAQYADVTDEEDEADEK	1	Unmodified	2194.9754	0.97536756	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	68.074	67.612	2	8.8575E-12	61652	160511_QHF_FH_JSI12i_1	113.35	101.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	392	4176	377	2220;2221	2918;2919	2918			2	
AALLETLSLLLAK	1	Unmodified	1354.8436	0.84355293	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.14		2	11						3	3	5	5	3	101.92	99.853	2;3	1.0438E-90	51529	160513_QHF_FH_JSI9Kac_6	264.37	209.77			0.91568	0.91954	15.33	12	12	Median	1.1662	0.96682	13.139	2	2	Median	0.91551	0.97992	14.894	4	4	Linear	0.95284	0.89296	3.7031	4	4	Median	1.0012	1.0821	34.575	2	2	Median	4200600000	2116900000	2083800000	578420000	275160000	303260000	993900000	519740000	474150000	1162000000	604700000	557340000	1466300000	717270000	749010000	393	3860	378	2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234;2235;2236;2237	2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935	2931			16	
AALLKASPK	2	Acetyl (K)	939.57532	0.57531699	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.713	31.669	2	0.00018012	19154	160513_QHF_FH_JSI11Kac_4	109.71	65.906			0.37577	0.37234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37577	0.37234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8013400	5825100	2188300	0	0	0	0	0	0	8013400	5825100	2188300	0	0	0	394	1720	379	2238	2936	2936	1725		1	
AALLLLLTFLAK	1	Unmodified	1285.8373	0.83734534	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	3	3	2	102.23	95.474	2	2.4163E-34	56402	160513_QHF_FH_JSI10Kac_6	176.38	158.52			1.0154	1.0126	55.211	5	5	Median	0.40944	0.35774	NaN	1	1	Median	1.0154	1.2108	NaN	1	1	Median	0.94058	0.90407	16.028	2	2	Median	1.3748	1.494	NaN	1	1	Median	656140000	372600000	283540000	308680000	193040000	115640000	256570000	135810000	120760000	31248000	17904000	13344000	59644000	25842000	33801000	395	3741	380	2239;2240;2241;2242;2243;2244;2245;2246;2247;2248	2937;2938;2939;2940;2941;2942;2943;2944;2945;2946	2946			10	
AALLNFDEFAVSK	1	Unmodified	1423.7347	0.73473076	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		89.232	88.694	2	0.00011587	77956	160511_QHF_FH_JSI11i_2	110.66	74.137			1.4779	1.4703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4779	1.4703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32452000	12484000	19968000	0	0	0	0	0	0	32452000	12484000	19968000	0	0	0	396	5696	381	2249	2947	2947			1	
AALLNQHYQVNFK	1	Unmodified	1544.81	0.80996139	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		4	8						8	6	5	5	4	57.128	52.716	2;3	6.4755E-117	45195	160511_QHF_FH_JSI12i_3	277.96	259.22			0.87841	0.92008	12.739	19	1	Median	1.1369	0.96054	11.131	6	1	Median	0.80042	0.94017	8.8283	5	0	Median	1.0611	1.0141	18.318	4	0	Linear	0.84013	0.88428	8.4799	4	0	Median	12032000000	6010300000	6021900000	2623800000	1215200000	1408600000	2636300000	1413800000	1222500000	3354200000	1571800000	1782400000	3417900000	1809500000	1608400000	397	878	382	2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269	2948;2949;2950;2951;2952;2953;2954;2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996	2989			49	
AALLSGPPGVGK	1	Unmodified	1065.6182	0.61824444	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.696	46.714	2	0.00038659	40206	160511_QHF_FH_JSI11i_2	70.908	60.198			0.39729	0.37072	67.754	4	1	Median	0.27702	0.23349	NaN	1	0	Median	0.1817	0.22037	NaN	1	0	Median	0.56977	0.58861	NaN	1	0	Median	0.7578	0.85822	NaN	1	1	Median	245340000	150920000	94424000	61424000	39573000	21851000	55331000	38118000	17212000	76505000	45421000	31083000	52082000	27806000	24276000	398	1430	383	2270;2271;2272;2273	2997;2998	2998			2	
AALLTER	0	Unmodified	772.4443	0.44430282	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.83		4	2				1	2		1	3	3	2	23.123	19.636	2	0.0033324	17299	160511_QHF_FH_JSI10i_2	105.2	58.537			0.7575	0.82375	38.901	9	2	Median	1.1418	0.96999	NaN	1	0	Median	0.60153	0.75116	8.306	3	0	Plateau	0.7575	0.76779	62.318	3	1	Median	0.81688	0.87439	11.045	2	1	Median	1877200000	1087700000	789560000	247650000	118530000	129120000	299970000	178030000	121940000	765960000	506510000	259440000	563650000	284600000	279050000	399	5658	384	2274;2275;2276;2277;2278;2279;2280;2281;2282	2999;3000;3001;3002;3003;3004	3003			6	
AALLWALAAALER	0	Unmodified	1367.7925	0.79252041	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	98.904	90.278	2;3	6.9727E-14	53773	160513_QHF_FH_JSI10Kac_6	171.87	171.87			1.0342	1.0393	18.26	5	0	Median	1.3493	1.1725	NaN	1	0	Median	0.76534	0.90805	NaN	1	0	Median	0.90109	0.87978	23.561	2	0	Median	1.0342	1.1149	NaN	1	0	Median	1068400000	543880000	524540000	275800000	125500000	150300000	398220000	213030000	185200000	250900000	133060000	117840000	143500000	72297000	71199000	400	3479	385	2283;2284;2285;2286;2287;2288	3005;3006;3007;3008;3009;3010	3009			6	
AALMDASQLEPGEK	1	Unmodified	1458.7024	0.70244436	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				52.522	51.322	2	0.00093307	45598	160511_QHF_FH_JSI9i_1	84.169	62.176			1.3328	1.129	NaN	1	1	Median	1.3328	1.129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37778000	17880000	19898000	37778000	17880000	19898000	0	0	0	0	0	0	0	0	0	401	3935	386	2289	3011	3011			1	
AALMESQGQQQEER	0	Oxidation (M)	1619.7209	0.72094797	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	18.127	17.846	2	4.8628E-05	15177	160511_QHF_FH_JSI11i_1	122.51	78.322			1.0232	1.1638	34.919	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0232	1.1638	NaN	1	0	Median	0.69853	0.67475	NaN	1	0	Median	1.2881	1.2933	NaN	1	0	Median	80972000	41720000	39252000	0	0	0	24267000	12908000	11359000	28998000	17093000	11906000	27707000	11720000	15988000	402	2587	387	2290;2291;2292	3012;3013;3014	3012		2036	3	
AALMESQGQQQEER	0	Unmodified	1603.726	0.72603334	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.329	17.836	2	3.6225E-40	15469	160511_QHF_FH_JSI12i_1	205.56	185.43			0.74386	0.79156	18.996	4	2	Median	1.1333	0.94668	NaN	1	0	Median	0.67014	0.7743	NaN	1	1	Median	0.82568	0.8092	NaN	1	1	Median	0.59039	0.59895	NaN	1	0	Median	398640000	220850000	177790000	96382000	44461000	51921000	86219000	55935000	30284000	100400000	50522000	49882000	115630000	69933000	45699000	403	2587	387	2293;2294;2295;2296	3015;3016;3017;3018;3019;3020	3017			6	
AALMFANAEEEFFYEK	1	Unmodified	1908.8604	0.86040156	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	98.132	97.913	2	1.2992E-16	86047	160511_QHF_FH_JSI11i_2	119.45	109.4			0.71785	0.81547	1.8792	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6819	0.80471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75569	0.82638	NaN	1	0	Median	35734000	20640000	15095000	0	0	0	17335000	10127000	7207700	0	0	0	18399000	10512000	7886900	404	5205	388	2297;2298;2299;2300	3021;3022;3023;3024	3023			4	
AALNAHLEALENQR	0	Unmodified	1548.8009	0.80085327	5788				yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	65.806	64.816	2	0.029497	57455	160511_QHF_FH_JSI10i_2	40.715	14.042	+		0.92968	1.0552	15.327	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65166	0.80916	0	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92968	1.0552	NaN	1	0	Median	265880000	147710000	118180000	0	0	0	134550000	77112000	57434000	0	0	0	131340000	70596000	60743000	405	5788	389	2301;2302;2303	3025	3025			1	
AALNALQPPEFR	0	Unmodified	1325.7092	0.70918471	2823	Q3ZAQ7	VMA21	Vacuolar ATPase assembly integral membrane protein VMA21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.24	3.85	3	13	3					2		5	3	6	7	66.026	64.57	2;3	3.394E-23	56516	160511_QHF_FH_JSI11i_2	180.36	170.09			0.91001	0.99345	34.393	13	5	Median	1.2012	1.0286	55.298	4	2	Median	0.71465	0.86739	19.19	2	0	Median	1.0052	1.0153	26.269	4	1	Median	0.8473	0.95184	30.091	3	2	Median	928460000	482250000	446210000	186650000	86163000	100490000	157880000	89697000	68183000	312350000	156510000	155840000	271570000	149880000	121700000	406	2823	390	2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324	3026;3027;3028;3029;3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050	3041			25	
AALNALQPPEFRNESSLASTLK	1	Unmodified	2356.2387	0.23867373	2823	Q3ZAQ7	VMA21	Vacuolar ATPase assembly integral membrane protein VMA21	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								3	1		78.399	77	3	5.3326E-07	68655	160511_QHF_FH_JSI11i_3	76.539	51.945			1.1444	1.3463	27.675	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1444	1.3463	27.675	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34472000	14818000	19654000	0	0	0	34472000	14818000	19654000	0	0	0	0	0	0	407	2823	391	2325;2326;2327;2328	3051;3052;3053;3054	3051			4	
AALNAVR	0	Unmodified	713.41842	0.41842242	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	12.654	11.98	2	0.0034792	9351	160511_QHF_FH_JSI12i_2	104.25	32.673			1.0471	1.0364	6.8785	2	0	Median	1.1346	0.98717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96638	1.088	NaN	1	0	Median	537140000	241290000	295860000	279390000	116430000	162970000	0	0	0	0	0	0	257750000	124860000	132890000	408	198	392	2329;2330;2331	3055;3056	3056			2	
AALNELLK	1	Unmodified	870.51747	0.51746776	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.363	50.384	2	0.0032901	43287	160511_QHF_FH_JSI12i_2	73.665	26.09			1.2315	1.1927	70.264	4	1	Median	1.6114	1.3573	NaN	1	1	Median	0.81447	1.0147	NaN	1	0	Median	4.5179	4.4966	NaN	1	0	Median	0.94112	1.0481	NaN	1	0	Median	176960000	77803000	99158000	40234000	20053000	20181000	40392000	22177000	18216000	40978000	8685600	32292000	55358000	26888000	28470000	409	3117	393	2332;2333;2334;2335	3057;3058;3059;3060	3057			4	
AALNELLKHIK	2	Acetyl (K)	1290.766	0.76597131	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.607	67.283	3	0.0022228	36714	160513_QHF_FH_JSI11Kac_6	62.924	57.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	410	3117	394	2336	3061	3061	2773		1	
AALPAHSFVCSLSLK	1	Unmodified	1599.8443	0.84429799	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.659	67.067	3	1.2565E-05	55100	160511_QHF_FH_JSI9i_3	79.652	60.921			1.0236	0.95588	39.015	3	1	Median	NaN	NaN	NaN	0	0	Median	0.56029	0.61634	NaN	1	0	Median	1.0236	0.95588	NaN	1	0	Median	1.3388	1.3421	NaN	1	1	Median	149760000	66800000	82957000	0	0	0	29921000	18144000	11777000	66974000	31116000	35858000	52863000	17541000	35322000	411	201	395	2337;2338;2339;2340	3062;3063;3064;3065;3066	3065			5	
AALPDLTK	1	Unmodified	827.47527	0.4752686	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	40.433	39.962	2	0.0074189	36251	160511_QHF_FH_JSI12i_1	69.198	26.329			0.43014	0.43135	7.8066	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41469	0.40819	NaN	1	1	Median	0.44617	0.45583	NaN	1	1	Median	427200000	315060000	112140000	0	0	0	0	0	0	240870000	184500000	56368000	186330000	130560000	55772000	412	2373	396	2341;2342	3067;3068	3068			2	
AALPLTTSDTK	1	Unmodified	1116.6027	0.60265396	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	41.098	36.826	2	0.00030488	32695	160511_QHF_FH_JSI11i_1	76.228	57.134			0.95314	1.1246	9.1269	7	0	Median	1.42	1.1524	NaN	1	0	Median	0.95306	1.1343	1.2169	2	0	Median	1.2139	1.1907	12.593	2	0	Median	0.92243	0.99997	0.0386	2	0	Median	1183800000	601470000	582300000	269710000	109800000	159900000	296120000	162790000	133330000	336980000	173240000	163740000	280950000	155630000	125330000	413	3290	397	2343;2344;2345;2346;2347;2348;2349	3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081	3069			13	
AALPTPALSPEDK	1	Unmodified	1308.6925	0.6925316	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		53.025	52.225	2	0.0021144	47320	160511_QHF_FH_JSI11i_1	58.829	48.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	414	4703	398	2350;2351	3082;3083	3082			2	
AALQEEEQASK	1	Unmodified	1202.5779	0.57789577	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	17.99	10.778	2	0.0011341	7838	160513_QHF_FH_JSI11Kac_3	80.239	73.019			1.0266	1.0627	8.4495	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1571	1.1282	NaN	1	0	Median	0.91081	1.0011	NaN	1	0	Median	4922900	2201600	2721200	0	0	0	0	0	0	2907300	1257600	1649700	2015500	944020	1071500	415	95	399	2352;2353	3084;3085;3086	3085			3	
AALQEELQLCK	1	Unmodified	1301.6649	0.66493664	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.904	5		2							1	2	3	1	53.303	52.696	2	9.3539E-28	46868	160511_QHF_FH_JSI9i_1	161.17	113.57			0.77619	0.75138	29.761	5	3	Median	NaN	NaN	NaN	0	0	Median	0.70717	0.81268	16.736	2	1	Median	0.63849	0.60793	29.961	2	2	Median	1.02	1.0873	NaN	1	0	Median	986520000	554770000	431760000	0	0	0	348320000	207000000	141320000	293000000	178130000	114870000	345200000	169630000	175570000	416	1650	400	2354;2355;2356;2357;2358;2359;2360	3087;3088;3089;3090;3091;3092;3093;3094;3095	3095			9	
AALQEELSDVLIYLVALAAR	0	Unmodified	2157.2045	0.20452005	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	5.93		2		1					5	2	3	2	1	105.22	99.558	2;3	1.3253E-304	58841	160513_QHF_FH_JSI10Kac_6	362.99	323.99			0.98133	1.0177	19.368	7	0	Median	0.95725	0.82379	9.5688	2	0	Median	0.88756	1.0603	15.984	3	0	Plateau	1.08	1.0282	NaN	1	0	Median	0.93412	0.9742	NaN	1	0	Median	1421100000	767120000	654020000	170030000	86083000	83948000	1164300000	638770000	525510000	51555000	25175000	26380000	35269000	17085000	18183000	417	4760	401	2361;2362;2363;2364;2365;2366;2367;2368	3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107	3107			12	
AALQELLSK	1	Unmodified	971.56515	0.56514624	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		4	5	4	4	60.959	56.585	2	2.0727E-11	48584	160511_QHF_FH_JSI12i_2	161.92	124.89			1.1614	1.0304	32.457	17	2	Median	1.2408	1.0195	47.339	4	0	Median	0.85738	1.0304	23.408	5	1	Median	1.0597	1.0567	35.07	4	0	Median	1.0442	1.0773	33.944	4	1	Median	21442000000	10499000000	10943000000	2909000000	1317200000	1591900000	4272900000	1983000000	2289900000	3728500000	1682900000	2045600000	10531000000	5516100000	5015200000	418	2026	402	2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385	3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135	3114			28	
AALQELLSKGLIK	2	Unmodified	1382.8497	0.84970094	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			81.028	79.709	3	0.030356	66764	160511_QHF_FH_JSI10i_3	37.013	27.479			0.46528	0.5304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46528	0.5304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13933000	10313000	3619600	0	0	0	13933000	10313000	3619600	0	0	0	0	0	0	419	2026	403	2386	3136	3136			1	
AALQELLSKGLIK	2	Acetyl (K)	1424.8603	0.86026563	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	89.428	80.038	2	1.4639E-06	44781	160513_QHF_FH_JSI11Kac_6	133.05	108.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70946000	70946000	0	0	0	0	0	0	0	46371000	46371000	0	24575000	24575000	0	420	2026	403	2387;2388	3137;3138	3137	2067;2068		2	
AALRDYETVVK	1	Unmodified	1263.6823	0.68230126	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	37.885	37.082	2;3	1.5808E-05	30098	160511_QHF_FH_JSI9i_3	80.17	67.539			0.92902	0.9733	7.5376	9	0	Median	1.3137	1.0555	3.1018	2	0	Median	0.90235	1.0426	4.9307	3	0	Median	0.97523	0.92835	5.4132	2	0	Median	0.9102	0.91808	8.2611	2	0	Median	1477000000	742210000	734810000	164140000	82654000	81482000	508820000	257860000	250960000	591550000	290440000	301100000	212520000	111250000	101270000	421	1793	404	2389;2390;2391;2392;2393;2394;2395;2396;2397	3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150	3147			12	
AALRPLVK	1	Unmodified	866.57017	0.57017204	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	21.818	21.186	3	0.024951	17668	160511_QHF_FH_JSI10i_3	35.295	13.164			0.82316	0.86958	28.901	4	1	Median	1.6607	1.3384	NaN	1	1	Median	0.59749	0.69577	NaN	1	0	Median	1.0127	0.97404	NaN	1	0	Median	0.66909	0.77632	NaN	1	0	Median	832770000	414210000	418560000	191990000	79695000	112300000	326600000	179790000	146810000	241920000	114660000	127260000	72262000	40066000	32196000	422	2037	405	2398;2399;2400;2401	3151;3152	3151			2	
AALRPTDVVLEVGPGTGNMTVK	1	Unmodified	2224.1886	0.18855241	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		74.685	73.723	3	1.0532E-06	65916	160511_QHF_FH_JSI11i_3	76.417	67.321			1.095	1.0063	6.204	3	0	Median	1.2166	1.0063	NaN	1	0	Median	0.81608	0.91412	NaN	1	0	Median	1.095	1.0266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70840000	35621000	35219000	17441000	9052800	8388600	22155000	12925000	9229800	31244000	13643000	17601000	0	0	0	423	5446	406	2402;2403;2404	3153;3154;3155;3156;3157	3153			5	
AALRQPQVAELLAEAR	0	Acetyl (Protein N-term)	1776.9846	0.98463129	1739	P51570	GALK1	Galactokinase	yes	yes	0	1	0	1	By MS/MS	By MS/MS			2	0		2								1	1			89.067	88.615	2	0.00019075	78696	160511_QHF_FH_JSI10i_2	76.522	59.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	424	1739	407	2405;2406	3158;3159;3160	3159			3	
AALSAGK	1	Unmodified	616.35443	0.35442518	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.9345	6.5823	2	0.042495	4526	160511_QHF_FH_JSI12i_1	49.058	6.8295			0.50059	0.53231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50059	0.53231	NaN	1	1	Median	987630000	661930000	325700000	0	0	0	0	0	0	0	0	0	987630000	661930000	325700000	425	1545	408	2407	3161	3161			1	
AALSALESFLK	1	Unmodified	1148.6441	0.64412484	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.17	1	4	5						4	3	5	3	3	90.657	87.802	2	3.2626E-59	79953	160511_QHF_FH_JSI12i_3	226.59	180.16			1.0194	1.0585	10.205	13	1	Median	1.0185	0.87089	19.731	3	0	Plateau	0.941	1.12	7.7182	4	1	Median	1.0683	1.0018	5.0722	3	0	Plateau	1.0194	1.0408	2.492	3	0	Plateau	4438200000	2138200000	2300000000	648220000	306720000	341510000	775280000	383060000	392220000	1430700000	645560000	785140000	1584000000	802860000	781100000	426	2094	409	2408;2409;2410;2411;2412;2413;2414;2415;2416;2417;2418;2419;2420;2421	3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200	3197			38	
AALSASEGEEVPQDK	1	Unmodified	1529.7209	0.72093119	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	4.92	3				6	3				1	4	3	4	36.019	29.27	2;3	1.3208E-233	25975	160511_QHF_FH_JSI10i_1	340.66	289.21			1.0247	1.0734	24.022	12	1	Median	1.2768	1.0435	NaN	1	0	Median	0.95078	1.1198	9.9625	4	0	Median	1.0564	1.0312	48.964	3	1	Median	0.99855	1.0556	10.601	4	0	Median	2162800000	1017800000	1145000000	604340000	236030000	368310000	712750000	354080000	358680000	13687000	5993600	7693400	832060000	421720000	410340000	427	736	410	2422;2423;2424;2425;2426;2427;2428;2429;2430;2431;2432;2433	3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221	3208			21	
AALSEEELEK	1	Unmodified	1117.5503	0.55028404	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.893	31.291	2	2.3532E-09	27853	160511_QHF_FH_JSI11i_1	129.38	110.29			0.87064	0.87208	12.458	4	0	Median	1.0069	0.82092	NaN	1	0	Median	0.78547	0.92644	NaN	1	0	Median	0.7905	0.77093	NaN	1	0	Median	0.95892	1.0193	NaN	1	0	Median	3438900000	1727400000	1711600000	615480000	273090000	342400000	936680000	525150000	411530000	788710000	333100000	455600000	1098100000	596030000	502030000	428	2217	411	2434;2435;2436;2437	3222;3223;3224;3225;3226;3227;3228;3229	3222			8	
AALSFAFAFLR	0	Unmodified	1212.6655	0.66552898	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		93.448	85.897	2	5.9377E-20	49937	160513_QHF_FH_JSI10Kac_6	168.26	126.81			0.76975	0.82621	5.6982	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67385	0.79359	NaN	1	0	Median	0.87929	0.86018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	87268000	47077000	40191000	0	0	0	46501000	30389000	16112000	40767000	16688000	24079000	0	0	0	429	719	412	2438;2439	3230;3231;3232	3232			3	
AALSGANVLTLIEK	1	Unmodified	1398.8082	0.80823006	2259	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.423	90.357	2	3.4968E-06	78400	160511_QHF_FH_JSI12i_3	125.82	107.04			0.29896	0.30037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29896	0.30037	NaN	1	1	Median	87714000	69753000	17961000	0	0	0	0	0	0	0	0	0	87714000	69753000	17961000	430	2259	413	2440	3233	3233			1	
AALSGSYVNFGVFR	0	Unmodified	1486.7569	0.75686319	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.564	74.968	2	0.00060517	41114	160513_QHF_FH_JSI10Kac_6	127.83	103.49			0.8546	0.98072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8546	0.98072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82872000	43292000	39580000	0	0	0	82872000	43292000	39580000	0	0	0	0	0	0	431	5327	414	2441	3234	3234			1	
AALSLPAK	1	Unmodified	769.46979	0.46978929	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	2	3	1	35.809	33.928	2	0.0017531	28741	160511_QHF_FH_JSI11i_2	85.265	31.06			1.1542	1.1237	11.351	8	0	Median	1.1582	0.95915	8.115	2	0	Median	0.92545	1.1158	3.2567	2	0	Median	1.2259	1.2318	3.0527	3	0	Median	1.0418	1.1059	NaN	1	0	Median	856440000	396700000	459740000	185740000	79787000	105950000	272890000	136230000	136660000	304290000	136050000	168240000	93521000	44635000	48886000	432	2586	415	2442;2443;2444;2445;2446;2447;2448;2449	3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246	3246			12	
AALSSFQK	1	Unmodified	850.45487	0.45486751	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.02		4	4					2		3	2	3	2	25.839	23.318	2	0.0032327	20020	160511_QHF_FH_JSI9i_2	80.229	58.098			0.97202	0.9481	27.373	10	2	Median	1.4337	1.2135	24.693	3	1	Median	1.0402	1.25	41.799	2	0	Median	0.91123	0.93013	4.4599	3	1	Plateau	0.85039	0.8978	47.083	2	0	Median	1258300000	652750000	605560000	157130000	89017000	68114000	183880000	97905000	85978000	403840000	199880000	203960000	513460000	265950000	247520000	433	1943	416	2450;2451;2452;2453;2454;2455;2456;2457;2458;2459	3247;3248;3249;3250;3251;3252;3253;3254;3255;3256	3251			10	
AALSSQQQQQLALLLQQFQTLK	1	Unmodified	2484.37	0.37002225	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.92	101.92	3	2.2341E-18	91027	160511_QHF_FH_JSI11i_3	138.22	116.62			0.62908	0.58881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62908	0.58881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	330390000	176130000	154250000	0	0	0	0	0	0	330390000	176130000	154250000	0	0	0	434	3172	417	2460	3257	3257			1	
AALTAEHFAALQSLLK	1	Acetyl (Protein N-term)	1724.9461	0.94612052	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	1	0	0		By MS/MS		By MS/MS	2	0		3									1		2	101.66	101.6	2;3	3.5524E-22	87423	160511_QHF_FH_JSI12i_2	134.56	115.82			0.78548	0.97021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78548	0.97021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208670000	95717000	112950000	0	0	0	208670000	95717000	112950000	0	0	0	0	0	0	435	5170	418	2461;2462;2463	3258;3259;3260	3259			2	
AALTGLLHR	0	Unmodified	950.56615	0.56614929	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		40.548	39.535	2	0.0021208	33141	160511_QHF_FH_JSI10i_3	66.073	47.342			0.8576	0.98305	37.543	3	0	Plateau	1.1628	0.98005	NaN	1	0	Median	0.8576	0.98305	NaN	1	0	Median	0.55353	0.51228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85493000	44830000	40664000	34477000	16373000	18104000	36641000	19417000	17224000	14376000	9039800	5335800	0	0	0	436	1848	419	2464;2465;2466	3261	3261			1	
AALTIDEK	1	Unmodified	859.4651	0.46509784	61	CON__P34955			yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		29.557	25.058	2	0.0040243	21812	160511_QHF_FH_JSI11i_1	69.628	40.478		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	437	61	420	2467;2468	3262;3263	3262			2	
AALTLTPSAVNK	1	Unmodified	1184.6765	0.6764876	4439	Q9BUE6	ISCA1	Iron-sulfur cluster assembly 1 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		46.98	46.029	2	0.0004502	41586	160511_QHF_FH_JSI11i_1	86.898	63.47			1.0087	0.9969	10.572	3	3	Plateau	1.0253	0.85482	8.1187	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0087	0.9969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	255730000	120810000	134920000	142830000	68152000	74682000	0	0	0	112900000	52658000	60241000	0	0	0	438	4439	421	2469;2470;2471	3264;3265;3266	3264			3	
AALTRDPQFQK	1	Acetyl (Protein N-term)	1315.6884	0.68844927	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	42.608	41.862	2	9.0193E-19	36700	160511_QHF_FH_JSI9i_2	89.355	60.268			1.0646	1.1321	7.7349	9	0	Median	1.4759	1.2029	5.3	2	0	Median	0.93073	1.1256	3.201	2	0	Median	1.1609	1.1543	13.862	2	0	Median	1.0094	1.1136	5.6728	3	0	Plateau	11463000000	5310700000	6152800000	1802400000	729170000	1073200000	2906000000	1418200000	1487800000	3245200000	1461600000	1783500000	3510000000	1701700000	1808300000	439	856	422	2472;2473;2474;2475;2476;2477;2478;2479;2480	3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286	3278			20	
AALTSAR	0	Unmodified	688.38679	0.38678794	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	7.4285	7.1767	2	0.013023	4905	160511_QHF_FH_JSI10i_3	71.852	21.733			0.93153	0.99995	18.851	5	2	Median	0.93153	0.76623	NaN	1	0	Median	0.92001	1.0489	NaN	1	1	Median	0.9896	1.0115	27.634	2	1	Median	0.99538	0.99995	NaN	1	0	Median	1148700000	615750000	532940000	400080000	196100000	203990000	127980000	70029000	57954000	533040000	301100000	231940000	87581000	48525000	39056000	440	109	423	2481;2482;2483;2484;2485	3287;3288;3289;3290	3287			4	
AALTTLFK	1	Acetyl (Protein N-term)	905.52222	0.52221879	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	4										2	2		97.432	97.372	1;2	0.00022835	88437	160511_QHF_FH_JSI10i_1	113.5	67.129			0.058244	0.068748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.058244	0.068748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60203000	59747000	456290	0	0	0	44715000	44259000	456290	15488000	15488000	0	0	0	0	441	4160	424	2486;2487;2488;2489	3291;3292;3293;3294	3294			4	
AALTVHQAR	0	Unmodified	965.54066	0.54066282	4095	Q96GQ5	C16orf58	RUS1 family protein C16orf58	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			9.9523	9.3366	3	0.0091362	7082	160511_QHF_FH_JSI10i_3	38.276	22.073			1.0223	0.97709	20.787	2	1	Median	1.0619	0.84352	NaN	1	1	Median	0.98421	1.1318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295540000	154430000	141110000	169480000	79888000	89590000	126060000	74542000	51521000	0	0	0	0	0	0	442	4095	425	2490;2491	3295;3296	3295			2	
AALVAQNYINYQQGTPHR	0	Unmodified	2043.0286	0.028621372	4391	Q9BS40	LXN	Latexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	4	5	3	2	54.123	50.566	2;3	1.1618E-44	26797	160513_QHF_FH_JSI9Kac_6	187	176.9			1.0648	1.0201	12.809	13	3	Median	1.2691	1.0475	9.5421	4	1	Median	0.81129	0.96236	14.868	4	2	Median	1.1223	1.103	18.303	3	0	Median	0.99959	1.031	15.369	2	0	Median	1539200000	749780000	789460000	450470000	160220000	290250000	842950000	473820000	369130000	188560000	87946000	100610000	57251000	27785000	29466000	443	4391	426	2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505	3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314	3312			18	
AALVDLEPGTMDSVR	0	Unmodified	1572.7818	0.78175731	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	71.003	68.308	2	4.5116E-40	62318	160511_QHF_FH_JSI10i_1	205.46	182.82			0.97382	1.0411	17.799	10	2	Median	1.2744	1.0585	2.3772	2	0	Median	0.92735	1.0969	3.8799	3	1	Median	0.98124	0.96699	7.525	2	0	Median	0.98904	1.0265	32.864	3	1	Median	2659400000	1275500000	1383900000	591200000	236850000	354360000	653760000	342350000	311410000	770430000	387940000	382500000	644010000	308390000	335620000	444	4440	427	2506;2507;2508;2509;2510;2511;2512;2513;2514;2515	3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329	3321			15	
AALVDLEPGTMDSVR	0	Oxidation (M)	1588.7767	0.77667193	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	8	6		3					3			1	4		1	67.488	56.791	2	5.5334E-11	50418	160511_QHF_FH_JSI10i_2	103.35	87.777			0.87266	0.9802	7.0024	2	1	Median	NaN	NaN	NaN	0	0	Median	0.87608	1.03	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86925	0.93285	NaN	1	0	Median	5035900	2819500	2216400	0	0	0	1854400	958200	896190	0	0	0	3181500	1861300	1320200	445	4440	427	2516;2517;2518;2519;2520;2521	3330;3331;3332;3333;3334;3335	3335		2470	6	
AALVDYLDGK	1	Unmodified	1063.555	0.55497548	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.979	62.457	2	0.047186	54337	160511_QHF_FH_JSI11i_2	43.77	30.417			1.1043	1.1023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1043	1.1023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60338000	23899000	36439000	0	0	0	0	0	0	60338000	23899000	36439000	0	0	0	446	3117	428	2522	3336	3336			1	
AALVLEDGSVLR	0	Acetyl (Protein N-term)	1283.7085	0.70851601	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	97.587	97.418	2	9.2665E-06	86454	160511_QHF_FH_JSI9i_1	113.62	73.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	447	1296	429	2523;2524;2525	3337;3338;3339;3340;3341;3342	3342			6	
AALVMYWK	1	Unmodified	980.51536	0.51535927	597	O76024	WFS1	Wolframin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	13.4	5.2			1						4	1	1	1	2	70.918	63.85	2	0.0010069	33422	160513_QHF_FH_JSI12Kac_6	103.29	84.192			1.2454	1.1845	17.345	5	0	Median	1.36	1.1845	NaN	1	0	Median	0.85493	0.98559	NaN	1	0	Median	1.1478	1.0821	NaN	1	0	Median	1.3616	1.4218	11.546	2	0	Median	372470000	168890000	203580000	64581000	27821000	36760000	82283000	39670000	42614000	162530000	74223000	88305000	63081000	27174000	35906000	448	597	430	2526;2527;2528;2529;2530	3343;3344;3345;3346	3345			4	
AALVMYWK	1	Oxidation (M)	996.51027	0.5102739	597	O76024	WFS1	Wolframin	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	62.205	52.313	2	0.043756	27382	160513_QHF_FH_JSI12Kac_6	42.914	38.18			1.0211	1.1186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.1186	NaN	1	0	Median	5322400	2919800	2402500	0	0	0	0	0	0	0	0	0	5322400	2919800	2402500	449	597	430	2531	3347	3347			1	
AALVVLENYYK	1	Unmodified	1281.6969	0.69688869	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		77.54	68.222	2	0.001177	37292	160513_QHF_FH_JSI11Kac_6	79.974	55.119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	450	3679	431	2532	3348	3348			1	
AALWALQGGTSVVIANGTHPK	1	Unmodified	2090.1273	0.12727278	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	2	1		77.266	70.863	3	2.6688E-17	38671	160513_QHF_FH_JSI10Kac_6	131.31	116.43			0.42321	0.4315	45.012	4	1	Median	0.41417	0.36183	NaN	1	0	Median	0.53093	0.62479	27.446	2	0	Median	0.28981	0.26732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	517970000	326990000	190980000	81459000	53841000	27618000	375800000	226660000	149150000	60704000	46493000	14211000	0	0	0	451	1837	432	2533;2534;2535;2536	3349;3350;3351;3352;3353;3354	3353			6	
AALYFQR	0	Unmodified	867.46029	0.46028724	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	1	3	1	3	36.218	34.262	2	0.011387	18993	160513_QHF_FH_JSI10Kac_6	69.39	21.148			0.95054	0.99934	40.326	6	3	Median	1.3518	1.0982	NaN	1	0	Median	0.88579	1.0381	18.716	2	1	Median	2.4899	2.3776	NaN	1	1	Median	0.81157	0.82344	10.225	2	1	Median	858960000	369960000	489000000	78897000	32005000	46892000	51620000	27536000	24084000	185670000	39524000	146150000	542760000	270890000	271870000	452	5350	433	2537;2538;2539;2540;2541;2542;2543;2544	3355;3356;3357;3358;3359;3360	3360			6	
AAMAVGGAGGSR	0	Acetyl (Protein N-term)	1045.4975	0.49747738	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.845	30.245	2	3.528E-05	26914	160511_QHF_FH_JSI10i_1	102.01	98.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	453	197	434	2545;2546;2547;2548	3361;3362;3363;3364	3363			4	
AAMAVGGAGGSR	0	Acetyl (Protein N-term);Oxidation (M)	1061.4924	0.492392	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.18	3			2	1					1	1	1	3	25.28	20.241	2	0.0002694	26341	160511_QHF_FH_JSI9i_1	68.657	60.717			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	454	197	434	2549;2550;2551;2552;2553;2554	3365;3366;3367;3368;3369;3370	3367		81	6	
AAMDNSEIAGEK	1	Oxidation (M)	1250.5449	0.54488108	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				2	2	3	4	15.06	13.394	2	2.9132E-07	8362	160511_QHF_FH_JSI10i_1	133.07	102			0.96992	1.0008	25.954	11	3	Median	1.0681	0.88043	43.578	2	1	Median	0.82563	0.97372	2.1472	2	0	Median	1.4811	1.1787	23.245	3	0	Plateau	0.86059	0.91557	18.107	4	2	Median	700320000	329540000	370780000	132220000	55627000	76597000	164470000	78618000	85854000	139130000	57168000	81957000	264500000	138130000	126370000	455	2780	435	2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565	3371;3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383	3379		2141	13	
AAMDNSEIAGEK	1	Unmodified	1234.55	0.54996646	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	23.325	19.758	2	3.6183E-14	12100	160513_QHF_FH_JSI11Kac_3	133.07	115.97			1.0286	1.0369	14.747	7	1	Median	1.3089	1.0655	NaN	1	0	Median	0.77027	0.90516	3.7147	2	1	Median	1.1048	1.0941	7.5898	2	0	Median	1.0278	1.0841	27.62	2	0	Median	1670700000	796730000	873960000	432990000	167990000	265000000	308140000	187230000	120900000	387750000	211460000	176290000	541820000	230050000	311760000	456	2780	435	2566;2567;2568;2569;2570;2571;2572;2573	3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395	3389			12	
AAMEALVVEVTK	1	Unmodified	1259.6795	0.67952407	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									2	2	1	71.081	70.675	2	9.3058E-06	61809	160511_QHF_FH_JSI11i_2	119.27	90.187			0.90387	0.93508	12.961	5	3	Median	NaN	NaN	NaN	0	0	Median	0.70266	0.83194	6.3416	2	2	Median	1.0065	1.0115	11.116	2	0	Median	0.96814	1.0401	NaN	1	1	Median	749650000	382100000	367560000	0	0	0	188510000	105680000	82835000	517770000	251970000	265800000	43375000	24451000	18924000	457	2265	436	2574;2575;2576;2577;2578	3396;3397;3398;3399;3400;3401;3402	3402			7	
AAMEPIVISAK	1	Unmodified	1128.6213	0.62128091	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1				1	3	1	54.584	51.969	2	2.2123E-05	46974	160511_QHF_FH_JSI11i_1	101.97	76.837			1.0571	1.027	13.938	5	1	Median	NaN	NaN	NaN	0	0	Median	0.86126	1.027	NaN	1	0	Median	1.0571	1.0064	19.041	3	0	Median	1.0736	1.1241	NaN	1	1	Median	1104300000	483710000	620560000	0	0	0	263340000	94375000	168960000	383030000	132860000	250170000	457900000	256480000	201420000	458	5616	437	2579;2580;2581;2582;2583	3403;3404;3405;3406	3403			3	
AAMFPETLDEGMQIPSTQFDAAHPTNVQR	0	Unmodified	3201.4859	0.485933	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.83	0.373	1	5								1		2	3	89.729	89.13	3	0.00024339	78385	160511_QHF_FH_JSI11i_2	45.07	38.91			1.357	1.569	15.471	3	3	Plateau	1.357	1.1973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3759	1.374	18.772	2	2	Median	NaN	NaN	NaN	0	0	Median	66373000	27330000	39044000	15515000	4984600	10530000	0	0	0	38040000	16041000	21999000	12818000	6303800	6514700	459	1422	438	2584;2585;2586;2587;2588;2589	3407;3408;3409;3410;3411;3412	3411			6	
AAMFTAGSNFNHVVQNEK	1	Unmodified	1963.921	0.92104476	443	O60725	ICMT	Protein-S-isoprenylcysteine O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		52.556	51.379	3	2.6437E-23	42897	160511_QHF_FH_JSI10i_3	138.66	128.97			1.1403	0.9884	29.244	4	1	Median	1.2661	1.023	NaN	1	0	Median	0.88867	1.03	50.249	2	1	Median	1.027	0.95499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	295930000	152520000	143410000	85374000	46454000	38920000	142490000	66091000	76402000	68065000	39974000	28091000	0	0	0	460	443	439	2590;2591;2592;2593	3413;3414;3415;3416;3417;3418	3414			6	
AAMGLGAR	0	Unmodified	745.39049	0.39049311	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.623	15.686	2	0.023687	12438	160511_QHF_FH_JSI12i_3	54.056	19.351			0.89386	0.89578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89386	0.89578	NaN	1	1	Median	160580000	64784000	95801000	0	0	0	0	0	0	0	0	0	160580000	64784000	95801000	461	10	440	2594	3419	3419			1	
AAMGPGISR	0	Unmodified	858.43817	0.43817159	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	17.122	17.141	2	0.00033354	13831	160511_QHF_FH_JSI12i_3	82.671	56.562			1.206	1.187	7.1747	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1998	1.1283	NaN	1	0	Median	1.2121	1.2488	NaN	1	0	Median	234460000	123790000	110670000	0	0	0	0	0	0	121610000	65988000	55620000	112860000	57805000	55051000	462	4080	441	2595;2596	3420;3421;3422;3423	3423			4	
AAMITHQR	0	Unmodified	926.47562	0.47561972	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		6.7123	6.2829	2;3	0.00055326	4179	160511_QHF_FH_JSI9i_3	104.45	88.294			1.0559	1.0224	18.896	5	1	Median	1.211	0.98495	8.864	2	0	Median	0.95199	1.1225	13.213	2	1	Median	0.78035	0.73778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	831690000	411190000	420500000	380490000	149030000	231460000	326340000	193610000	132720000	124870000	68549000	56323000	0	0	0	463	228	442	2597;2598;2599;2600;2601	3424;3425;3426	3426			3	
AAMIVNQLSK	1	Unmodified	1073.5903	0.59031513	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.47			5					1		2	2	1	1	44.425	41.862	2	4.2674E-07	35608	160511_QHF_FH_JSI12i_3	113.18	89.22			0.91792	0.92256	13.891	6	1	Median	0.99462	0.80697	14.883	2	1	Median	0.84035	0.97211	9.7312	2	0	Median	1.152	1.0746	NaN	1	0	Median	0.92012	0.9379	NaN	1	0	Median	521910000	275690000	246220000	41081000	19494000	21587000	78573000	42323000	36250000	159290000	82920000	76372000	242970000	130960000	112010000	464	1065	443	2602;2603;2604;2605;2606;2607	3427;3428;3429;3430;3431;3432;3433	3433			7	
AAMIWIVGEYAER	0	Unmodified	1507.7493	0.74933497	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.58		1	6						7	4	4	5	1	87.239	82.31	2;3	1.2011E-16	43862	160513_QHF_FH_JSI10Kac_6	141.88	119.89			0.79137	0.8649	20.779	12	4	Median	1.0609	0.90172	18.092	4	1	Median	0.72925	0.86832	2.3768	3	1	Median	0.79471	0.74536	28.69	4	2	Median	0.58921	0.63236	NaN	1	0	Median	1038700000	570510000	468190000	237620000	122530000	115090000	406430000	232740000	173690000	304960000	153240000	151710000	89703000	62005000	27698000	465	2046;2296	444	2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621	3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452	3451			19	
AAMIWIVGEYAER	0	Oxidation (M)	1523.7442	0.74424959	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.597	70.234	2	6.8936E-08	37720	160513_QHF_FH_JSI9Kac_6	107.03	89.805			0.83815	0.8959	24.829	4	0	Median	1.1979	1.0109	NaN	1	0	Median	0.95268	1.1441	NaN	1	0	Median	0.67107	0.65603	NaN	1	0	Median	0.7374	0.79396	NaN	1	0	Median	147290000	76057000	71237000	32055000	13223000	18833000	41353000	18224000	23128000	44723000	27349000	17374000	29163000	17262000	11901000	466	2046;2296	444	2622;2623;2624;2625	3453;3454;3455;3456;3457	3455		1710	5	
AAMTSLMDLTLLLAR	0	Unmodified	1618.8786	0.87863458	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	5.75	5.93		2	1						1	1		2	1	101.61	99.212	2	2.7753E-23	50894	160513_QHF_FH_JSI11Kac_6	147.33	124.45			1.0835	1.034	12.336	4	1	Median	1.1849	1.0097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97347	0.95954	19.735	2	1	Median	1.0598	1.0588	NaN	1	0	Median	294290000	139300000	154990000	39193000	16381000	22812000	0	0	0	150440000	69429000	81008000	104650000	53488000	51167000	467	4424	445	2626;2627;2628;2629	3458;3459;3460	3458			2	
AANAAENDFSVSQAEMSSR	0	Unmodified	1983.8592	0.85923236	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	46.201	45.525	2;3	4.1102E-266	40854	160511_QHF_FH_JSI10i_1	357.22	346.76			0.9097	0.89851	12.987	8	0	Median	1.0234	0.83616	14.234	2	0	Median	0.78952	0.92929	21.462	2	0	Median	0.96212	0.93892	13.546	2	0	Median	0.90092	0.94675	11.459	2	0	Median	1985100000	1026900000	958180000	461890000	223930000	237970000	380290000	210770000	169520000	685720000	362860000	322860000	457160000	229330000	227840000	468	3634	446	2630;2631;2632;2633;2634;2635;2636;2637	3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471	3468			11	
AANAAENDFSVSQAEMSSR	0	Oxidation (M)	1999.8541	0.85414698	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	37.442	37.009	2	3.0798E-11	33250	160511_QHF_FH_JSI11i_1	114.56	104.51			1.4326	1.4521	37.605	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9709	1.8944	NaN	1	1	Median	1.0413	1.113	NaN	1	0	Median	34712000	13937000	20775000	0	0	0	0	0	0	11856000	1981800	9874100	22856000	11955000	10901000	469	3634	446	2638;2639;2640;2641;2642	3472;3473;3474;3475;3476;3477;3478	3473		2274	7	
AANAFHVYQVYIR	0	Unmodified	1550.7994	0.7993967	3735	Q8TEQ0	SNX29	Sorting nexin-29	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		15.8	0.433								1	3	1	2	1		67.86	59.067	2;3	1.6589E-05	32564	160513_QHF_FH_JSI10Kac_6	114.4	98.511			0.68523	0.82039	26.85	3	0	Median	1.15	0.94507	NaN	1	0	Median	0.57231	0.67914	26.721	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173170000	104980000	68197000	1887800	1226600	661230	171290000	103750000	67536000	0	0	0	0	0	0	470	3735	447	2643;2644;2645;2646	3479;3480;3481	3480			3	
AANAITKNNDLVR	1	Acetyl (K)	1440.7685	0.76849051	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.79	38.276	2	0.0022636	22575	160513_QHF_FH_JSI11Kac_4	73.781	55.175			0.45701	0.45375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45701	0.45375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2012100	1251000	761030	0	0	0	0	0	0	2012100	1251000	761030	0	0	0	471	5130	448	2647	3482	3482	3317		1	
AANATTNPSQLLPLELVDK	1	Acetyl (Protein N-term)	2036.079	0.078985188	5642	Q9Y4Y9	LSM5	U6 snRNA-associated Sm-like protein LSm5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	101.85	101.73	2;3	7.2239E-22	92316	160511_QHF_FH_JSI12i_1	202.25	179.13			1.1025	0.98005	178.99	4	2	Median	5.6729	4.6216	217.5	2	1	Median	0.29469	0.34224	NaN	1	1	Median	0.98508	0.96749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1088000000	577520000	510440000	372750000	137600000	235150000	208940000	166920000	42016000	244240000	128110000	116130000	262040000	144890000	117150000	472	5642	449	2648;2649;2650;2651;2652;2653	3483;3484;3485;3486;3487;3488	3484			5	
AANAYGISDPSQISDPVK	1	Unmodified	1831.8952	0.89520716	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	57.897	57.239	2	3.8455E-07	52098	160511_QHF_FH_JSI12i_1	117.92	93.929			0.53758	0.53754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53758	0.53754	NaN	1	1	Median	16748000	11803000	4944700	0	0	0	0	0	0	0	0	0	16748000	11803000	4944700	473	5744	450	2654	3489	3489			1	
AANDAGYFNDEMAPIEVK	1	Unmodified	1953.8778	0.87784254	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	4	1	2	71.487	70.943	2;3	6.382E-117	64550	160511_QHF_FH_JSI12i_1	268.61	260.5			1.0588	1.0427	9.1855	9	2	Median	1.286	1.055	2.6662	2	0	Median	0.88045	1.0434	12.407	4	2	Median	1.0588	1.0197	NaN	1	0	Median	1.089	1.1276	11.079	2	0	Median	2925900000	1412300000	1513600000	541360000	216970000	324400000	1210900000	642110000	568830000	504300000	231550000	272750000	669240000	321650000	347590000	474	1545	451	2655;2656;2657;2658;2659;2660;2661;2662;2663	3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504	3493			15	
AANDAGYFNDEMAPIEVK	1	Oxidation (M)	1969.8728	0.87275716	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	60.606	60.063	2	0.0001011	54651	160511_QHF_FH_JSI12i_1	80.534	74.81			1.0161	1.0107	5.2722	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0806	1.0491	NaN	1	1	Median	0.9555	0.97376	NaN	1	0	Median	75177000	38453000	36724000	0	0	0	0	0	0	42705000	21039000	21666000	32472000	17414000	15059000	475	1545	451	2664;2665;2666	3505;3506;3507;3508	3507		1220	4	
AANFENHSGK	1	Unmodified	1073.489	0.48902118	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	5.8684	5.9161	2;3	4.8019E-34	3470	160511_QHF_FH_JSI12i_3	206.43	170.04			0.97688	0.9591	12.315	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1314	1.0759	7.4477	2	0	Median	0.85658	0.88286	2.908	2	0	Median	4707900000	2395400000	2312500000	0	0	0	0	0	0	1687900000	738030000	949820000	3020100000	1657400000	1362700000	476	1139	452	2667;2668;2669;2670	3509;3510;3511;3512;3513;3514;3515	3512			7	
AANGVVLATEK	1	Unmodified	1071.5924	0.59242362	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.42	4	5				3	1			2	3	3	5	28.895	25.465	2	4.0463E-07	14678	160513_QHF_FH_JSI10Kac_3	111.06	79.828			0.93999	0.98929	22.794	12	1	Median	1.3338	1.1156	12.19	2	0	Median	0.90216	1.0756	12.762	3	0	Median	0.98209	0.95788	15.203	3	0	Median	0.77275	0.83091	27.6	4	1	Median	3250900000	1398900000	1852000000	796900000	304020000	492880000	827820000	391630000	436190000	850010000	395980000	454030000	776210000	307310000	468900000	477	1265	453	2671;2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683	3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532	3532			17	
AANIPEHNTIGFMFACVGR	0	Unmodified	2103.9982	0.99824922	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	80.048	73.151	3	2.8205E-34	40060	160513_QHF_FH_JSI10Kac_6	165.74	155.82			1.0126	1.1859	35.254	5	0	Median	1.7328	1.484	NaN	1	0	Median	0.95304	1.1123	9.0662	2	0	Median	1.0111	0.93306	NaN	1	0	Median	2.2393	2.2751	NaN	1	0	Median	252820000	124300000	128520000	55436000	21535000	33901000	116860000	62801000	54062000	60782000	32787000	27995000	19738000	7179200	12559000	478	3648	454	2684;2685;2686;2687;2688	3533;3534;3535;3536;3537;3538;3539	3539			6	
AANIPEHNTIGFMFACVGR	0	Oxidation (M)	2119.9932	0.99316384	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	74.31	64.867	3	0.0036888	33967	160513_QHF_FH_JSI12Kac_6	58.577	49.172			2.1481	2.2548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1481	2.2548	NaN	1	1	Median	7237700	1803700	5434000	0	0	0	0	0	0	0	0	0	7237700	1803700	5434000	479	3648	454	2689	3540	3540		2278	1	
AANMFKMAK	2	Acetyl (K)	1052.5147	0.51470735	1838;4649	P54920;Q9H115	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	no	no	1	0	0	1			By MS/MS		16	0									1			1		53.103	43.378	2	0.039125	23514	160513_QHF_FH_JSI11Kac_6	46.129	37.596			1.3288	1.2996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3288	1.2996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8157400	3328400	4829000	0	0	0	0	0	0	8157400	3328400	4829000	0	0	0	480	1838;4649	455	2690	3541	3541			1	
AANMIPAHDSPLAALAFDASGTK	1	Unmodified	2268.1209	0.12086678	5636	Q9Y4P8	WIPI2	WD repeat domain phosphoinositide-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	86.489	86.01	3	2.3923E-08	76366	160511_QHF_FH_JSI10i_2	80.061	70.645			0.85749	0.99582	40.292	7	2	Median	0.83029	0.71354	61.529	2	2	Median	0.85749	1.0471	NaN	1	0	Median	0.81209	0.78748	33.196	2	0	Median	0.9077	1.0277	54.572	2	0	Median	239480000	134820000	104660000	42658000	24724000	17934000	38119000	21402000	16717000	66642000	38249000	28393000	92065000	50446000	41619000	481	5636	456	2691;2692;2693;2694;2695;2696;2697	3542;3543;3544;3545;3546;3547;3548;3549;3550;3551;3552	3550			11	
AANMLQQSGSK	1	Unmodified	1133.5499	0.54990688	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.46	6	3	1			2	2			2	5	2	5	16.943	14.176	2	1.9853E-09	11726	160511_QHF_FH_JSI11i_1	127.37	101.43			0.81495	0.76272	49.944	9	6	Median	1.2829	1.0792	67.263	2	1	Median	0.63163	0.73958	49.087	2	1	Median	0.88018	0.87471	NaN	1	0	Median	0.65139	0.67756	53.526	4	4	Median	1890500000	1090100000	800420000	524660000	220260000	304400000	378190000	303420000	74761000	8158900	4821000	3337900	979480000	561560000	417920000	482	1579	457	2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711	3553;3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566	3553			13	
AANMLQQSGSK	1	Oxidation (M)	1149.5448	0.5448215	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	5.81	3					5				2	2	2	2	9.4002	3.1968	2	4.1377E-05	11945	160511_QHF_FH_JSI10i_1	101.3	69.36			1.0869	1.1097	47.008	6	3	Median	3.6341	3.0088	NaN	1	1	Median	0.73549	0.85588	NaN	1	0	Median	1.1513	1.1097	24.665	2	1	Median	1.0075	1.1025	26.286	2	1	Median	76729000	20635000	56095000	62914000	14134000	48780000	1570600	947190	623400	6641000	2821500	3819400	5603500	2731700	2871800	483	1579	457	2712;2713;2714;2715;2716;2717;2718;2719	3567;3568;3569;3570;3571;3572;3573	3569		1236	7	
AANNGALPPDLSYIVR	0	Unmodified	1669.8788	0.87876924	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	12	8								5	6	3	6	77.596	77.028	2;3	1.4154E-16	66761	160511_QHF_FH_JSI12i_2	118.48	103.79			1.0209	1.0394	30.689	12	2	Median	1.429	1.1522	41.712	4	1	Median	0.96858	1.1438	23.657	3	0	Median	1.0538	1.0331	35.518	3	1	Median	0.94334	0.98769	7.8169	2	0	Median	1139300000	575830000	563470000	315790000	147030000	168760000	240180000	125660000	114520000	324760000	170150000	154610000	258570000	132990000	125580000	484	905	458	2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739	3574;3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586;3587;3588;3589;3590;3591;3592	3577			19	
AANNIASLLTK	1	Unmodified	1114.6346	0.63462279	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	59.513	59.379	2	0.00062071	51084	160511_QHF_FH_JSI12i_3	69.672	49.682			1.1495	1.1425	3.1384	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1762	1.1174	NaN	1	0	Median	1.1235	1.1681	NaN	1	0	Median	333120000	156330000	176790000	0	0	0	0	0	0	129630000	55678000	73956000	203490000	100660000	102830000	485	4460	459	2740;2741	3593	3593			1	
AANPVDFLSK	1	Unmodified	1060.5553	0.55530983	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	2	3	1	61.5	59.514	2	0.00034696	54188	160511_QHF_FH_JSI12i_1	77.379	48.003			0.6125	0.59481	20.825	8	0	Median	0.59036	0.50693	14.115	2	0	Median	0.44483	0.54166	14.104	2	0	Median	0.63457	0.63461	18.625	3	0	Plateau	0.62444	0.66117	NaN	1	0	Median	530680000	340090000	190590000	122430000	76184000	46245000	156340000	111950000	44388000	158250000	96588000	61666000	93651000	55364000	38288000	486	3460	460	2742;2743;2744;2745;2746;2747;2748;2749	3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604	3597			10	
AANSCTSYSGTTLNLK	1	Unmodified	1686.7883	0.78829925	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	40.695	40.25	2	3.3298E-22	36263	160511_QHF_FH_JSI11i_1	141.38	115.94			0.67784	0.71925	45.651	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.57671	0.64104	NaN	1	1	Median	1.2037	1.1543	NaN	1	1	Median	1.5784	1.5749	NaN	1	1	Median	55758000	32352000	23406000	0	0	0	18968000	13738000	5230600	20317000	12406000	7910800	16473000	6208300	10264000	487	5463	461	2750;2751;2752;2753	3605;3606;3607;3608	3606			4	
AANSLEAFIFETQDK	1	Unmodified	1682.8152	0.81516593	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	3.28	6	9						1		2	4	6	4	89.018	87.88	2;3	1.1452E-27	77969	160511_QHF_FH_JSI11i_2	155.98	107.54			1.1753	1.1069	16.774	15	5	Median	1.2794	1.0779	3.7498	2	0	Median	0.88388	1.0456	17.559	4	1	Median	1.2321	1.184	12.383	5	2	Median	1.1348	1.1287	25.053	4	2	Median	676880000	329690000	347190000	111600000	56124000	55473000	179810000	95468000	84340000	244220000	115500000	128730000	141250000	62601000	78652000	488	5633	462	2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768;2769	3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629;3630;3631	3625			22	
AANSSGQGFQNK	1	Acetyl (Protein N-term)	1249.5687	0.56872807	4973	Q9NRY2	INIP	SOSS complex subunit C	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	16.699	15.939	2	6.9793E-05	13242	160511_QHF_FH_JSI9i_1	82.645	75.077			0.94729	0.88193	9.1397	2	0	Median	1.169	0.94081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76764	0.82674	NaN	1	0	Median	77514000	40500000	37013000	40596000	19041000	21555000	0	0	0	0	0	0	36918000	21460000	15459000	489	4973	463	2770;2771	3632;3633	3633			0	
AANSSGQGFQNKNR	1	Acetyl (K);Acetyl (Protein N-term)	1561.7233	0.72333123	4973	Q9NRY2	INIP	SOSS complex subunit C	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	30.994	22.668	2	0.0034659	9883	160513_QHF_FH_JSI11Kac_1	56.359	44.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	490	4973	464	2772;2773;2774	3634;3635;3636	3635	3280		3	
AANTATEEK	1	Unmodified	933.44034	0.44033966	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	3.6347	3.538	2	0.001145	1577	160511_QHF_FH_JSI11i_1	79.906	45.099			1.4257	1.3365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4257	1.3365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24236000	9543500	14693000	0	0	0	0	0	0	24236000	9543500	14693000	0	0	0	491	3819	465	2775;2776;2777;2778;2779	3637;3638;3639;3640;3641;3642	3637			6	
AANVGSMFQYWK	1	Acetyl (Protein N-term)	1442.6653	0.66527099	2481	Q13948	CUX1	Protein CASP	no	no	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			100.86	100.75	2	0.00016337	91305	160511_QHF_FH_JSI10i_1	52.579	41.414			2.792	2.6712	103.08	2	1	Median	6.8823	5.5367	NaN	1	1	Median	1.1326	1.2887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41481000	12519000	28962000	19490000	1696300	17794000	21991000	10823000	11168000	0	0	0	0	0	0	492	2481	466	2780;2781	3643;3644	3643			2	
AANVLLSEHGEVK	1	Unmodified	1365.7252	0.72522871	5721	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	1	4	31.81	30.99	2;3	5.8117E-07	26393	160511_QHF_FH_JSI12i_2	93.258	82.428			0.74642	0.86117	20.214	6	2	Median	0.78733	0.67569	NaN	1	0	Median	0.714	0.86164	1.4454	2	1	Median	0.66893	0.69357	NaN	1	1	Median	0.95167	1.0145	21.805	2	0	Median	423490000	252900000	170600000	99310000	72980000	26330000	131130000	74624000	56502000	21527000	15132000	6395100	171530000	90161000	81368000	493	5721	467	2782;2783;2784;2785;2786;2787;2788;2789;2790	3645;3646;3647;3648;3649;3650;3651	3647			7	
AANVLLSEQGDVK	1	Unmodified	1342.7092	0.70924429	5206	Q9P289;O00506	STK26;STK25	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	41.945	41.125	2;3	4.2055E-06	36437	160511_QHF_FH_JSI9i_1	124.1	102.64			0.96857	0.91455	48.605	3	3	Plateau	1.5063	1.254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.012	1.0757	67.587	2	2	Median	542080000	257240000	284840000	203950000	78806000	125140000	0	0	0	0	0	0	338130000	178430000	159700000	494	5206	468	2791;2792;2793	3652;3653;3654	3654			3	
AANWYER	0	Unmodified	908.41407	0.41406533	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	21.865	21.198	2	0.021461	17251	160511_QHF_FH_JSI12i_3	56.547	45.73			0.98335	1.0293	14.46	5	0	Median	1.5329	1.2849	NaN	1	0	Median	0.86419	1.0703	NaN	1	0	Median	0.98335	1.0283	NaN	1	0	Median	0.89288	0.93859	13.05	2	0	Median	414600000	207300000	207300000	62149000	23241000	38907000	78117000	45421000	32696000	78305000	39019000	39286000	196030000	99616000	96412000	495	534	469	2794;2795;2796;2797;2798	3655;3656	3656			2	
AANYDFYQLLEEK	1	Unmodified	1602.7566	0.75658842	3624	Q8ND04	SMG8	Protein SMG8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	87.637	86.943	2	0.00076565	76439	160511_QHF_FH_JSI11i_2	80.69	48.682			9.6473	10.48	51.924	3	3	Plateau	NaN	NaN	NaN	0	0	Median	12.99	15.827	NaN	1	1	Median	7.1647	6.9393	NaN	1	1	Median	16.199	18.105	NaN	1	1	Median	394780000	29035000	365750000	0	0	0	126620000	11196000	115420000	148770000	12356000	136410000	119400000	5483600	113910000	496	3624	470	2799;2800;2801	3657;3658;3659	3658			3	
AANYSSTSTRR	0	Acetyl (Protein N-term)	1254.5953	0.59527717	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	10.88	10.49	2	9.3096E-07	8222	160511_QHF_FH_JSI9i_2	117.53	101.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	497	4423	471	2802;2803;2804;2805;2806;2807;2808;2809	3660;3661;3662;3663;3664;3665;3666;3667	3665			8	
AAPAGGFQNIACLR	0	Unmodified	1444.7245	0.7245172	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.566	59.297	2	0.0048796	51046	160511_QHF_FH_JSI12i_3	79.974	65.283			0.9496	1.0189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9496	1.0189	NaN	1	1	Median	19273000	11889000	7384300	0	0	0	0	0	0	0	0	0	19273000	11889000	7384300	498	5245	472	2810	3668	3668			1	
AAPAPGKVGDVTPQVK	2	Acetyl (K)	1575.8621	0.86205654	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.8	0.433					1	3					2		2	56.538	47.253	3	0.01488	20586	160513_QHF_FH_JSI10Kac_2	37.555	24.355			0.78981	0.86456	22.406	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81876	0.93079	31.109	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78981	0.86456	NaN	1	0	Median	6524100	3517700	3006400	0	0	0	3477000	1805300	1671800	0	0	0	3047100	1712500	1334700	499	2409	473	2811;2812;2813;2814	3669;3670;3671;3672	3669	2471		4	
AAPAPGLISVFSSSQELGAALAQLVAQR	0	Acetyl (Protein N-term)	2793.5025	0.50249299	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.98	4	5	4						4	4	5	4	4	104.55	102.59	2;3	4.6247E-43	58220	160513_QHF_FH_JSI10Kac_6	269.24	240.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	677	474	2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831	3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689	3688			17	
AAPAQPK	1	Acetyl (Protein N-term)	723.39154	0.39153897	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		14.219	6.7579	2	0.052896	4295	160513_QHF_FH_JSI11Kac_1	33.738	33.738			0.86098	0.83274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86098	0.83274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2425600	1205400	1220200	0	0	0	0	0	0	2425600	1205400	1220200	0	0	0	501	408	475	2832	3690	3690			1	
AAPAQQTTQPGGGK	1	Acetyl (Protein N-term)	1352.6684	0.66844211	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	2	2	17.01	15.159	2	9.4874E-11	12705	160511_QHF_FH_JSI9i_1	131.82	126.04			0.93043	0.86677	91.809	5	1	Median	1.0596	0.86677	NaN	1	0	Median	0.65629	0.79833	NaN	1	0	Median	1.0037	0.97477	NaN	1	0	Median	0.32351	0.33726	150.18	2	1	Median	300820000	185680000	115140000	91453000	52165000	39288000	65662000	39177000	26485000	88292000	42971000	45321000	55412000	51368000	4043900	502	5107	476	2833;2834;2835;2836;2837;2838	3691;3692;3693;3694;3695	3692			5	
AAPASSAGASDAR	0	Unmodified	1130.5316	0.53161428	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	7.4288	3.6403	2	0.0001399	4475	160511_QHF_FH_JSI12i_1	84.658	60.503			0.84015	0.94214	10.1	8	1	Median	1.3419	1.1141	NaN	1	0	Median	0.85425	1.0018	2.854	2	0	Median	0.90625	0.88719	11.316	2	1	Median	0.83736	0.90432	4.9005	3	0	Median	1259200000	633210000	625940000	326160000	164200000	161960000	307000000	148350000	158650000	279940000	137980000	141960000	346050000	182680000	163370000	503	3649	477	2839;2840;2841;2842;2843;2844;2845;2846	3696;3697;3698;3699;3700;3701;3702;3703;3704;3705	3697			10	
AAPAVQTK	1	Unmodified	784.4443	0.44430282	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	9.5658	6.9136	2	0.0014714	5887	160511_QHF_FH_JSI9i_1	89.046	36.363			0.98982	1.0255	14.456	9	0	Median	1.3415	1.1103	NaN	1	0	Median	0.89059	1.0472	24.987	3	0	Median	0.98982	0.97931	8.3048	3	0	Median	0.98155	1.0465	2.8638	2	0	Median	2461200000	1262100000	1199100000	539890000	210990000	328900000	669790000	387390000	282400000	616550000	316120000	300430000	634930000	347600000	287330000	504	1848	478	2847;2848;2849;2850;2851;2852;2853;2854;2855	3706;3707;3708;3709;3710;3711;3712	3711			7	
AAPDITGHK	1	Unmodified	908.47158	0.4715802	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.25		4	1				1	3		2	2	1	4	12.585	9.8662	2;3	0.0004804	8151	160511_QHF_FH_JSI11i_2	79.906	42.886			1.2642	1.2592	19.212	7	1	Median	1.4703	1.2343	2.8312	2	0	Median	0.84398	1.0317	NaN	1	0	Median	1.2033	1.21	NaN	1	0	Median	1.2642	1.401	21.582	3	1	Median	412670000	197370000	215290000	73868000	30372000	43496000	76540000	42792000	33747000	117340000	64349000	52989000	144920000	59858000	85061000	505	5702	479	2856;2857;2858;2859;2860;2861;2862;2863;2864	3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723	3718			11	
AAPDITGHKR	1	Acetyl (K)	1106.5833	0.58325592	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	1	0	0	1		By matching	By MS/MS		15.3	0.471								2	1		1	2		24.203	14.924	3	0.010211	10092	160513_QHF_FH_JSI11Kac_5	72.652	64.12			0.55523	0.59339	105.12	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0675	1.2479	NaN	1	0	Median	0.28878	0.28217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7948200	5421600	2526700	0	0	0	1821800	859850	961980	6126400	4561700	1564700	0	0	0	506	5702	480	2865;2866;2867	3724;3725	3725	3531		2	
AAPEASSPPASPLQHLLPGK	1	Unmodified	1967.0476	0.04762548	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	2	3	2	67.498	66.86	3	1.4726E-25	57908	160511_QHF_FH_JSI12i_3	177.6	168.02			1.1336	1.1504	13.918	8	0	Median	1.4567	1.2443	NaN	1	0	Median	1.0507	1.2527	12.756	2	0	Median	0.95543	1.0858	11.859	3	0	Plateau	1.0596	1.0615	19.097	2	0	Median	1726600000	857570000	869070000	151990000	58364000	93630000	235830000	112720000	123110000	619520000	321600000	297930000	719290000	364880000	354410000	507	4260	481	2868;2869;2870;2871;2872;2873;2874;2875	3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738	3738			13	
AAPEEFRK	1	Unmodified	946.48723	0.48723027	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	11.31	11.34	2;3	0.0010047	8547	160511_QHF_FH_JSI12i_3	73.248	37.953			1.1869	1.1293	103.34	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63139	0.59936	89.592	2	1	Median	2.3721	2.4648	NaN	1	1	Median	530560000	288820000	241740000	0	0	0	0	0	0	455750000	260840000	194910000	74818000	27984000	46834000	508	2082	482	2876;2877;2878;2879	3739;3740;3741;3742;3743	3743			5	
AAPEEHDSPTEASQPIVEEEETK	1	Acetyl (Protein N-term)	2564.1402	0.14020105	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	49.267	48.628	2;3	4.274E-24	43154	160511_QHF_FH_JSI9i_1	153.95	142.16			1.0768	1.1769	111.73	6	3	Median	NaN	NaN	NaN	0	0	Median	0.50431	0.59974	84.41	2	1	Median	1.2994	1.2715	NaN	1	0	Median	3.2295	3.3437	143.36	3	2	Plateau	250150000	133410000	116740000	16457000	0	16457000	89896000	71375000	18521000	43847000	21261000	22585000	99954000	40775000	59179000	509	4640	483	2880;2881;2882;2883;2884;2885;2886	3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754	3753			11	
AAPEEPQQRPPEAVAAAPAGTTSSR	0	Unmodified	2488.2306	0.23062824	4144	Q96JP5	ZFP91	E3 ubiquitin-protein ligase ZFP91	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.547	33.942	3	7.109E-13	30414	160511_QHF_FH_JSI11i_1	93.966	87.871			1.0736	1.071	3.0007	4	0	Median	1.2654	1.0514	NaN	1	0	Median	0.93396	1.0897	NaN	1	0	Median	1.0864	1.0526	NaN	1	0	Median	1.061	1.119	NaN	1	0	Median	378060000	189630000	188430000	87696000	38321000	49376000	83883000	43008000	40875000	97338000	51246000	46092000	109140000	57053000	52091000	510	4144	484	2887;2888;2889;2890	3755;3756;3757;3758;3759;3760;3761;3762;3763	3757			9	
AAPEERDLTQEQTEK	1	Acetyl (Protein N-term)	1785.8381	0.83808621	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	32.483	31.88	2	1.8412E-15	28414	160511_QHF_FH_JSI10i_1	134.98	101.09			0.9466	1.1155	15.829	4	0	Linear	1.2688	1.0558	NaN	1	0	Median	0.86257	1.0014	NaN	1	0	Median	1.2128	1.1786	NaN	1	0	Median	1.3455	1.4324	NaN	1	0	Median	518930000	236750000	282180000	116340000	59463000	56880000	150160000	74872000	75286000	144240000	60251000	83993000	108190000	42162000	66026000	511	4013	485	2891;2892;2893;2894	3764;3765;3766;3767;3768;3769	3766			6	
AAPEGSGLGEDARLDQETAQWLR	0	Acetyl (Protein N-term)	2511.199	0.19899376	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.682	84.22	2;3	6.3761E-09	76685	160511_QHF_FH_JSI11i_1	83.905	76.066			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	512	4080	486	2895;2896;2897;2898	3770;3771;3772;3773	3770			4	
AAPEMVSLLK	1	Unmodified	1057.5842	0.58416712	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.67	0.471	2	4								1	2	2	1	63.769	63.032	2	0.00045736	54760	160511_QHF_FH_JSI11i_2	73.985	41.144			1.0199	1.1298	12.361	6	0	Median	1.2483	1.1256	NaN	1	0	Median	0.95137	1.1479	4.1762	2	0	Median	1.0025	0.98405	20.058	2	0	Median	1.0754	1.1863	NaN	1	0	Median	320430000	149690000	170740000	47868000	21175000	26692000	88661000	43101000	45560000	120520000	51900000	68616000	63385000	33510000	29875000	513	3912	487	2899;2900;2901;2902;2903;2904	3774;3775;3776;3777;3778;3779	3778			4	
AAPFSLEYR	0	Unmodified	1052.5291	0.52909508	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.55	3	4	3				3	4	3	4	6	4	6	58.371	52.838	2	5.7799E-06	45206	160511_QHF_FH_JSI12i_2	114.5	71.497			0.89896	0.95732	7.8044	18	3	Median	1.1674	0.96321	4.4127	4	1	Median	0.80595	0.95732	4.6495	6	1	Median	0.94864	0.93718	6.7572	4	0	Median	0.85718	0.93466	14.289	4	1	Median	6472000000	3315500000	3156600000	1297000000	563260000	733760000	1627800000	913220000	714570000	2270700000	1161100000	1109600000	1276500000	677890000	598650000	514	2641	488	2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924	3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811	3783			32	
AAPGAAGSR	0	Unmodified	756.38785	0.38785057	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	4.7698	4.461	2	4.1189E-06	2214	160511_QHF_FH_JSI12i_2	120.46	26.294			0.97516	1.0457	11.284	6	1	Median	NaN	NaN	NaN	0	0	Median	0.94669	1.1413	16.119	2	1	Median	0.95375	0.94789	1.9142	2	0	Median	0.99069	1.0867	1.6932	2	0	Median	4455400000	2291100000	2164300000	0	0	0	1559100000	819270000	739800000	1432000000	724400000	707620000	1464300000	747420000	716910000	515	3834	489	2925;2926;2927;2928;2929;2930	3812;3813;3814;3815;3816;3817;3818	3812			7	
AAPGAEFAPNK	1	Unmodified	1071.5349	0.53490874	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.1	4	5	2			3	1			4	4	3	4	28.964	25.969	2	2.2133E-11	15513	160513_QHF_FH_JSI12Kac_4	141.2	123.96			1.0612	1.0647	11.519	15	5	Median	1.3587	1.1666	13.404	4	3	Median	0.85467	1.0109	9.637	4	1	Median	1.0909	1.3108	13.643	3	0	Plateau	0.95159	1.036	9.145	4	1	Median	7206600000	3142400000	4064200000	1565400000	733270000	832150000	1897600000	891470000	1006100000	2102300000	745010000	1357300000	1641300000	772670000	868680000	516	2644	490	2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945	3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844	3841			26	
AAPGAEFAPNKR	1	Acetyl (K)	1269.6466	0.64658446	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	43.135	33.141	2	3.0571E-11	19475	160513_QHF_FH_JSI12Kac_4	125.48	97.467			0.9959	1.1151	11.189	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88394	1.0303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.122	1.2069	NaN	1	0	Median	26157000	12109000	14048000	0	0	0	10287000	4991000	5296000	0	0	0	15870000	7118500	8751500	517	2644	491	2946;2947	3845;3846	3846	2604		2	
AAPGAEFAPNKR	1	Unmodified	1227.636	0.63601977	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.374	19.136	3	0.010745	15390	160511_QHF_FH_JSI9i_3	37.364	23.96			1.6525	1.3405	NaN	1	0	Median	1.6525	1.3405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26128000	9713700	16414000	26128000	9713700	16414000	0	0	0	0	0	0	0	0	0	518	2644	491	2948	3847	3847			1	
AAPGEFR	0	Unmodified	746.37114	0.37113788	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		13.261	13.049	2	0.018198	10213	160511_QHF_FH_JSI11i_2	60.294	30.452			1.2875	1.312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2875	1.312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	321630000	143010000	178620000	0	0	0	0	0	0	321630000	143010000	178620000	0	0	0	519	1857	492	2949;2950	3848;3849	3849			2	
AAPGSTKPK	2	Acetyl (K)	897.49198	0.4919813	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		12.201	4.8327	2	0.025646	5099	160513_QHF_FH_JSI11Kac_3	49.418	38.349			0.7156	0.77298	21.765	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76389	0.90159	NaN	1	0	Median	0.67037	0.66272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8921100	5361200	3559900	0	0	0	3733400	2133800	1599600	5187700	3227400	1960300	0	0	0	520	4771	493	2951;2952	3850;3851;3852	3851	3223		3	
AAPGSTKPK	2	Unmodified	855.48142	0.48141661	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.6295	4.722	3	0.0011111	2217	160511_QHF_FH_JSI12i_3	61.65	45.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	521	4771	493	2953	3853	3853			1	
AAPGYHMAK	1	Unmodified	944.45382	0.45382165	855;992	P06737;P11217;P11216	PYGL;PYGM;PYGB	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form	no	no	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	10.682	10.502	3	0.00012322	7814	160511_QHF_FH_JSI12i_3	68.224	53.55			1.3324	1.4471	10.803	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2617	1.4471	NaN	1	0	Median	1.7914	1.6801	NaN	1	0	Median	1.3324	1.362	NaN	1	0	Median	461940000	175410000	286530000	0	0	0	72800000	29476000	43324000	133640000	42766000	90879000	255490000	103170000	152330000	522	855;992	494	2954;2955;2956	3854	3854			1	
AAPLAGFGYGLPISR	0	Unmodified	1488.8089	0.80889876	2631	Q15120	PDK3	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			86.173	85.001	2	0.016803	71123	160511_QHF_FH_JSI10i_3	53.528	39.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	523	2631	495	2957	3855	3855			1	
AAPLDSIHSLAAYYIDCIR	0	Unmodified	2148.0674	0.067374644	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	11.7	6.13			2						4	1	1	2	2	96.032	90.467	3	2.4979E-54	88103	160511_QHF_FH_JSI12i_3	176.42	148.92			1.0395	1.1269	28.889	6	0	Median	1.6311	1.3773	NaN	1	0	Median	1.0426	1.2302	NaN	1	0	Median	0.81999	0.77572	18.918	2	0	Median	1.1944	1.2212	23.778	2	0	Median	2520500000	1328000000	1192500000	218260000	80751000	137510000	247740000	130160000	117580000	941250000	566420000	374830000	1113200000	550660000	562550000	524	1650	496	2958;2959;2960;2961;2962;2963	3856;3857;3858;3859;3860	3857			5	
AAPLWDSKK	2	Unmodified	1014.5498	0.54983053	1825	P54619;Q9UGI9	PRKAG1;PRKAG3	5'-AMP-activated protein kinase subunit gamma-1;5'-AMP-activated protein kinase subunit gamma-3	yes	no	0	0	0	1				By MS/MS	3	0			1										1	23.299	23.281	3	0.027834	19200	160511_QHF_FH_JSI12i_3	33.088	23.874			1.8218	2.1117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8218	2.1117	NaN	1	1	Median	72989000	26362000	46628000	0	0	0	0	0	0	0	0	0	72989000	26362000	46628000	525	1825	497	2964	3861	3861			1	
AAPMTPAARPEDYEAALNAALADVPELAR	0	Acetyl (Protein N-term)	3035.5022	0.50223499	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	102.08	101.95	3	1.1696E-17	92578	160511_QHF_FH_JSI12i_1	110.08	100.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	526	2216	498	2965	3862	3862			1	
AAPPEPGEPEER	0	Acetyl (Protein N-term)	1319.5994	0.59935949	2920	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	31.083	30.511	2	0.0077119	27447	160511_QHF_FH_JSI12i_1	42.718	26.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	527	2920	499	2966	3863	3863			1	
AAPPEPGEPEERK	1	Acetyl (Protein N-term)	1447.6943	0.69432251	2920	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.981	23.434	2	1.0133E-06	20502	160511_QHF_FH_JSI11i_1	94.616	78.987			1.0633	1.1194	3.2917	4	0	Linear	1.3369	1.0918	NaN	1	0	Median	0.86553	1.0412	NaN	1	0	Median	1.0595	1.0297	NaN	1	0	Median	1.0671	1.099	NaN	1	0	Median	580120000	280700000	299420000	137110000	54303000	82807000	126250000	71512000	54740000	125390000	64915000	60475000	191370000	89972000	101390000	528	2920	500	2967;2968;2969;2970	3864;3865;3866;3867;3868;3869;3870;3871	3865			8	
AAPPPPGYHQNGVIR	0	Unmodified	1572.8161	0.8161094	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	26.49	26.043	3	6.4331E-05	22372	160511_QHF_FH_JSI11i_3	82.202	75.473			0.96964	0.89759	17.92	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.062	1.2254	NaN	1	0	Median	0.96964	0.89759	NaN	1	0	Median	0.89373	0.89926	NaN	1	0	Median	294620000	135060000	159560000	0	0	0	67445000	27743000	39702000	140450000	61309000	79138000	86725000	46008000	40717000	529	2332	501	2971;2972;2973	3872	3872			1	
AAPQSPSVPK	1	Unmodified	980.5291	0.52909508	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.119	18.622	2	5.4891E-05	15759	160511_QHF_FH_JSI11i_1	92.051	61.866			0.49753	0.4748	14.726	4	1	Linear	0.81853	0.65378	NaN	1	1	Median	0.42324	0.50106	NaN	1	0	Median	0.47734	0.46393	NaN	1	0	Median	0.51858	0.5437	NaN	1	0	Median	1375300000	929280000	446020000	249340000	160850000	88487000	407250000	298310000	108940000	475450000	336040000	139410000	243250000	134070000	109180000	530	558	502	2974;2975;2976;2977	3873;3874;3875;3876;3877;3878;3879	3873			7	
AAPREEPLTPR	0	Unmodified	1235.6622	0.66223452	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			17.417	16.341	3	0.0017233	13302	160511_QHF_FH_JSI10i_3	55.04	42.827			0.72484	0.84984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72484	0.84984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76654000	41919000	34734000	0	0	0	76654000	41919000	34734000	0	0	0	0	0	0	531	280	503	2978	3880	3880			1	
AAPRPAPVAQPPAAAPPSAVGSSAAAPR	0	Unmodified	2532.3561	0.35610352	5726	Q9Y6H1;Q5T1J5	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.52	3	1	3					6		5	3	3	2	50.615	45.128	3;4	6.7945E-18	36920	160511_QHF_FH_JSI9i_3	107.01	103.67			1.0862	1.0947	10.79	13	0	Median	1.4717	1.1942	12.116	5	0	Median	0.93256	1.0947	8.7901	3	0	Median	1.0567	1.0339	5.8974	3	0	Plateau	1.0439	1.1213	11.359	2	0	Median	1061600000	510200000	551440000	563330000	254500000	308830000	300660000	156340000	144320000	133990000	70170000	63821000	63655000	29192000	34463000	532	5726	504	2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991	3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901	3891			20	
AAPRPPPAR	0	Acetyl (Protein N-term)	973.54575	0.5457482	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	1	0	1		By MS/MS			2	0		1									1			15.253	14.583	2	0.017227	12188	160511_QHF_FH_JSI10i_2	41.892	25.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	533	5227	505	2992	3902	3902			1	
AAPRPSPAISVSVSAPAFYAPQK	1	Acetyl (Protein N-term)	2353.243	0.24303082	2723	Q15942	ZYX	Zyxin	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	3										1		2	81.761	81.427	2;3	1.5848E-11	73912	160511_QHF_FH_JSI10i_1	34.221	15.164			0.94781	1.0398	7.3394	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83828	0.98723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0717	1.0952	NaN	1	0	Median	158200000	87296000	70903000	0	0	0	89931000	52402000	37528000	0	0	0	68269000	34894000	33375000	534	2723	506	2993;2994;2995	3903;3904;3905;3906	3906			4	
AAPSAGSWSTFQHK	1	Acetyl (Protein N-term)	1515.7106	0.71064128	1540	P42575	CASP2	Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12	yes	yes	0	1	0	0				By MS/MS	2	0		1											1	52.05	50.658	2	0.026289	43372	160511_QHF_FH_JSI12i_2	37.426	30.736			1.484	1.6153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.484	1.6153	NaN	1	1	Median	25135000	11300000	13835000	0	0	0	0	0	0	0	0	0	25135000	11300000	13835000	535	1540	507	2996	3907	3907			1	
AAPSDGFKPR	1	Acetyl (Protein N-term)	1086.5458	0.54580778	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		26.156	25.577	2	4.9758E-08	22495	160511_QHF_FH_JSI11i_1	89.698	71.473			1.0125	0.98233	10.43	3	0	Median	1.0646	0.88893	NaN	1	0	Median	0.92084	1.095	NaN	1	0	Median	1.0125	0.98233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	549280000	289360000	259920000	205790000	115170000	90615000	180050000	97889000	82159000	163440000	76299000	87144000	0	0	0	536	3916	508	2997;2998;2999	3908;3909;3910;3911;3912	3909			4	
AAPSDGFKPR	1	Acetyl (K);Acetyl (Protein N-term)	1128.5564	0.55637247	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.3	0.471				2	1						1	1	1	52.577	43.201	2	0.0018159	17257	160513_QHF_FH_JSI11Kac_1	67.993	63.398			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	537	3916	508	3000;3001;3002	3913;3914;3915	3913	3001		3	
AAPSPSGGGGSGGGSGSGTPGPVGSPAPGHPAVSSMQGK	1	Acetyl (Protein N-term)	3284.5116	0.51163048	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			47.358	46.932	3	2.0784E-12	42226	160511_QHF_FH_JSI10i_1	51.868	49.674			0.82135	0.98017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82135	0.98017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54834000	32657000	22177000	0	0	0	54834000	32657000	22177000	0	0	0	0	0	0	538	1575	509	3003	3916;3917	3917			2	
AAPSTAPAEATPPKPGEAEAPPK	2	Unmodified	2184.1063	0.10626257	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	34.012	33.094	3;4	6.8071E-11	28872	160511_QHF_FH_JSI9i_1	100.76	82.464			0.96403	0.89875	23.045	2	0	Median	1.2801	1.0578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72601	0.76361	NaN	1	0	Median	203880000	92490000	111390000	153430000	63368000	90063000	0	0	0	0	0	0	50451000	29122000	21329000	539	732	510	3004;3005;3006;3007	3918;3919;3920;3921;3922;3923	3922			6	
AAPTAASDQPDSAATTEK	1	Unmodified	1730.7959	0.79588705	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.17	8			2	3					2	3	4	4	21.136	18.019	2;3	2.1842E-81	15172	160511_QHF_FH_JSI9i_1	303.04	289.13			0.96508	0.98539	31.494	13	2	Median	1.4764	1.2275	9.6691	2	0	Median	0.88773	1.0457	46.175	3	1	Plateau	1.0226	0.98505	29.263	4	1	Median	1.0815	1.1384	20.455	4	0	Linear	1394000000	656310000	737740000	338100000	158010000	180080000	348580000	160800000	187780000	384190000	184230000	199960000	323170000	153260000	169920000	540	4378	511	3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019;3020	3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943	3940			20	
AAPTSAPPSK	1	Unmodified	925.4869	0.48689592	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.129	8.8934	2	0.012608	6694	160511_QHF_FH_JSI10i_1	44.98	31.992			0.72851	0.85276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72851	0.85276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90970000	56293000	34677000	0	0	0	90970000	56293000	34677000	0	0	0	0	0	0	541	2353	512	3021	3944	3944			1	
AAPVDLELK	1	Acetyl (Protein N-term)	996.54916	0.54916182	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.402	68.849	2	0.00027276	62546	160511_QHF_FH_JSI11i_1	52.482	26.588			0.97178	0.91234	5.8978	4	0	Median	1.0245	0.85656	NaN	1	0	Median	0.73945	0.88008	NaN	1	0	Median	1.0107	0.94579	NaN	1	0	Median	0.93435	0.97084	NaN	1	0	Median	300210000	154500000	145700000	78421000	34337000	44084000	76628000	44113000	32515000	70329000	34347000	35982000	74827000	41704000	33123000	542	461	513	3022;3023;3024;3025	3945;3946;3947;3948;3949;3950;3951	3945			7	
AAPVDLELKK	2	Acetyl (Protein N-term)	1124.6441	0.64412484	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.813	54.153	2	0.00023895	48029	160511_QHF_FH_JSI9i_1	64.04	53.809			0.88155	0.90006	6.5457	4	0	Median	1.0481	0.85296	NaN	1	0	Median	0.80004	0.97817	NaN	1	0	Median	0.88736	0.86447	NaN	1	0	Median	0.87579	0.93712	NaN	1	0	Median	1120000000	575460000	544510000	303260000	139490000	163760000	282790000	156740000	126040000	261280000	138680000	122600000	272650000	140550000	132100000	543	461	514	3026;3027;3028;3029	3952;3953;3954;3955;3956;3957;3958	3957			7	
AAPVLLR	0	Acetyl (Protein N-term)	780.48577	0.48577371	3492	Q8N0U8	VKORC1L1	Vitamin K epoxide reductase complex subunit 1-like protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	59.44	58.705	2	0.018932	53296	160511_QHF_FH_JSI12i_1	44.611	14.541			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	544	3492	515	3030;3031;3032	3959;3960;3961	3960			3	
AAPVLLR	0	Unmodified	738.47521	0.47520902	3492	Q8N0U8	VKORC1L1	Vitamin K epoxide reductase complex subunit 1-like protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	2.33	0.471		2	1									1	2	33.081	32.474	2	0.0091535	27215	160511_QHF_FH_JSI12i_3	80.377	10.988			1.1069	1.1327	12.763	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1175	1.1031	NaN	1	0	Median	1.1961	1.256	14.611	2	0	Median	232260000	95676000	136590000	0	0	0	0	0	0	56052000	22008000	34044000	176210000	73668000	102540000	545	3492	515	3033;3034;3035	3962	3962			1	
AAPVMNVIHSIFSLVLK	1	Unmodified	1838.0488	0.048811454	4227	Q96RT7	TUBGCP6	Gamma-tubulin complex component 6	yes	yes	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	100.59	91.161	3	0.044811	50192	160513_QHF_FH_JSI12Kac_6	22.051	11.712			0.87817	0.89781	27.794	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.0928	NaN	1	0	Median	0.70673	0.73762	NaN	1	0	Median	71847000	37248000	34599000	0	0	0	0	0	0	36903000	16234000	20669000	34944000	21014000	13930000	546	4227	516	3036;3037	3963	3963			1	
AAPVSCFK	1	Unmodified	878.43202	0.43202358	3946	Q969R5	L3MBTL2	Lethal(3)malignant brain tumor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.8332	6.4974	2	0.054955	4204	160511_QHF_FH_JSI9i_1	36.185	21.773			1.4657	1.5086	22.457	4	0	Median	1.8879	1.5428	NaN	1	0	Median	1.4184	1.6486	NaN	1	0	Median	1.5146	1.4752	NaN	1	0	Median	0.97414	1.001	NaN	1	0	Median	434720000	216740000	217980000	129650000	63839000	65811000	104350000	47868000	56479000	99400000	46197000	53202000	101320000	58834000	42490000	547	3946	517	3038;3039;3040;3041	3964	3964			1	
AAPVTGGMGAVLMR	0	Unmodified	1329.6897	0.6897116	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.608	60.333	2	0.0064519	51978	160511_QHF_FH_JSI12i_3	94.309	68.688			0.91143	0.95314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91143	0.95314	NaN	1	0	Median	37952000	20163000	17789000	0	0	0	0	0	0	0	0	0	37952000	20163000	17789000	548	1141	518	3042	3965	3965			0	
AAPVVAPPGVVVSR	0	Acetyl (Protein N-term)	1359.7874	0.78743503	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				72.533	71.602	2	0.027166	63638	160511_QHF_FH_JSI9i_1	45.257	24.928			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	549	2358	519	3043	3966	3966			1	
AAQAAAAAQAAAAQAAQAEAADSWYLALLGFAEHFR	0	Acetyl (Protein N-term)	3643.7808	0.78079311	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	1	0	0		By MS/MS			16	0									1		1			102.43	96.708	3	1.6311E-17	57180	160513_QHF_FH_JSI10Kac_6	110.98	101.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	550	5752	520	3044	3967	3967			1	
AAQAGPTQPGPPR	0	Unmodified	1246.6418	0.64183343	4444	Q9BUL5	PHF23	PHD finger protein 23	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	14.7	14.001	2	0.0046298	11639	160511_QHF_FH_JSI12i_1	54.584	28.069			0.74968	0.69721	18.918	2	0	Median	0.71958	0.60991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78103	0.797	NaN	1	0	Median	62292000	37127000	25165000	29572000	18317000	11256000	0	0	0	0	0	0	32719000	18810000	13909000	551	4444	521	3045;3046;3047	3968;3969;3970	3968			3	
AAQAGVAVGDWVLSIDGENAGSLTHIEAQNK	1	Unmodified	3120.5476	0.54760528	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.486	98.505	3	2.3374E-19	85262	160511_QHF_FH_JSI12i_3	94.192	88.161			0.76737	0.81059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76737	0.81059	NaN	1	1	Median	13283000	8871000	4412300	0	0	0	0	0	0	0	0	0	13283000	8871000	4412300	552	4937	522	3048	3971;3972	3971			2	
AAQALALLR	0	Acetyl (Protein N-term)	967.58147	0.581465	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	93.564	91.18	2	7.8996E-07	85552	160511_QHF_FH_JSI11i_1	138.9	109.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	553	2730	523	3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059	3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989	3974			17	
AAQANVR	0	Unmodified	728.39294	0.39293595	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	3.5405	3.3153	2	0.0080688	1708	160511_QHF_FH_JSI10i_1	85.061	36.946			0.74763	0.7908	3.5149	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66415	0.7783	NaN	1	0	Median	0.85652	0.83245	NaN	1	0	Median	0.74763	0.7908	NaN	1	0	Median	320710000	188300000	132400000	0	0	0	122380000	75294000	47089000	104620000	58592000	46027000	93704000	54417000	39286000	554	4108	524	3060;3061;3062	3990;3991	3991			2	
AAQAPSSFQLLYDLK	1	Unmodified	1650.8617	0.86172219	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	2.65	7	9	8					1		5	7	6	7	88.998	88.088	2;3	1.4088E-30	78137	160511_QHF_FH_JSI9i_2	196.15	171.36			0.90816	0.95896	17.971	24	5	Median	1.2203	0.99688	15.372	5	0	Median	0.79779	0.95304	25.077	7	3	Median	0.91407	0.92442	12.74	5	0	Median	0.88409	0.98723	15.332	7	2	Median	2251300000	1177600000	1073700000	396040000	176430000	219620000	813380000	449530000	363850000	523180000	279140000	244040000	518660000	272480000	246180000	555	1004	525	3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087	3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023	4009			32	
AAQASDLEK	1	Unmodified	931.46108	0.4610751	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.47	4	4			3	3				2	4	4	4	12.412	8.2672	2	4.8344E-06	7442	160511_QHF_FH_JSI9i_1	117.89	95.759			1.001	1.0141	20.314	14	2	Median	1.1196	0.91235	8.5096	2	0	Median	1.2398	1.4972	18.055	4	0	Linear	1.1506	1.1158	13.719	4	0	Median	0.8165	0.85866	27.509	4	2	Median	10746000000	5935500000	4810700000	2762700000	1418100000	1344700000	2681500000	1459800000	1221700000	2823500000	1604200000	1219300000	2478400000	1453400000	1025000000	556	1471	526	3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101	4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040	4035			17	
AAQASDLEKIHLDEK	2	Acetyl (K)	1708.8632	0.86317875	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			61.047	50.348	3	3.608E-11	27631	160513_QHF_FH_JSI10Kac_4	124.68	102.9			1.0733	1.2883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0733	1.2883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38484000	17489000	20995000	0	0	0	38484000	17489000	20995000	0	0	0	0	0	0	557	1471	527	3102	4041	4041	1454;1455		1	
AAQCVTK	1	Acetyl (Protein N-term)	818.39564	0.39563807	479	O75131	CPNE3	Copine-3	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				13.254	12.343	1	0.026248	9750	160511_QHF_FH_JSI9i_1	35.356	25.606			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8471300	8471300	0	8471300	8471300	0	0	0	0	0	0	0	0	0	0	558	479	528	3103	4042	4042			1	
AAQDRDQIYR	0	Unmodified	1234.6054	0.60544792	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	9.9113	9.6754	2;3	1.3872E-08	7563	160511_QHF_FH_JSI10i_2	131.11	103.36			1.2012	1.132	7.895	9	0	Median	1.2682	1.0711	7.8177	2	0	Median	0.96129	1.1381	10.493	2	0	Median	1.2535	1.1995	5.2797	3	0	Plateau	1.0627	1.0624	5.1995	2	0	Median	1033800000	506920000	526880000	302920000	134840000	168080000	195260000	101370000	93887000	382740000	188410000	194330000	152870000	82302000	70572000	559	2044	529	3104;3105;3106;3107;3108;3109;3110;3111;3112	4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054	4051			12	
AAQEEYVK	1	Unmodified	936.45526	0.45526144	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.87	4	4	2		3	4	3	1	1	4	7	5	6	13.52	8.6379	2	8.2996E-07	6349	160513_QHF_FH_JSI12Kac_3	138.54	103.05			1.0987	1.0971	18.416	22	0	Plateau	1.2601	1.1102	7.8452	4	0	Median	0.83578	0.97443	13.405	7	0	Median	0.99885	0.98817	31.06	5	0	Median	0.8671	0.94106	10.126	6	0	Median	43429000000	20579000000	22850000000	11828000000	4865200000	6962700000	12706000000	6870900000	5834700000	9400100000	3973500000	5426600000	9495000000	4869400000	4625500000	560	803	530	3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134	4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085	4080			31	
AAQEEYVKR	1	Acetyl (K)	1134.5669	0.56693715	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	23.573	15.732	2	4.9148E-32	9832	160513_QHF_FH_JSI10Kac_3	198.58	155.98			0.39941	0.44011	77.801	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2665	1.5243	2.1761	2	0	Median	0.28912	0.28568	2.4657	2	0	Median	0.39941	0.44011	5.5833	2	0	Median	364110000	240900000	123210000	0	0	0	88769000	39927000	48842000	206920000	155360000	51552000	68422000	45610000	22812000	561	803	531	3135;3136;3137;3138;3139;3140	4086;4087;4088;4089;4090;4091;4092	4092	424		7	
AAQELQEGQR	0	Unmodified	1128.5523	0.55234972	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	10.215	6.8954	2	5.2951E-11	6730	160511_QHF_FH_JSI12i_1	147.2	128.11			0.96833	1.025	10.816	7	1	Median	1.077	0.89999	NaN	1	0	Median	0.87032	1.025	16.841	2	0	Median	1.1205	1.1071	3.5134	2	1	Median	0.90566	0.96836	8.0461	2	0	Median	1590300000	770440000	819890000	335650000	146540000	189110000	377970000	201290000	176680000	434640000	200630000	234010000	442060000	221970000	220090000	562	957	532	3141;3142;3143;3144;3145;3146;3147	4093;4094;4095;4096;4097;4098;4099;4100;4101;4102	4095			10	
AAQEQVLNASR	0	Unmodified	1185.6102	0.61019895	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	18.337	17.764	2	7.6417E-09	15135	160511_QHF_FH_JSI10i_1	141.89	114.75			0.99947	0.93826	1.7611	3	1	Median	1.1399	0.93255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99947	0.96393	NaN	1	0	Median	0.90841	0.93826	NaN	1	1	Median	287670000	137940000	149730000	105130000	44380000	60748000	0	0	0	108880000	54445000	54431000	73666000	39119000	34547000	563	4282	533	3148;3149;3150;3151;3152	4103;4104;4105;4106;4107;4108	4107			6	
AAQFVDLLGYFSLK	1	Unmodified	1570.8395	0.83953018	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	96.959	87.854	2	1.1528E-09	48011	160513_QHF_FH_JSI12Kac_6	117.79	96.393			0.8235	0.70119	NaN	1	1	Median	0.8235	0.70119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92781000	39876000	52906000	92781000	39876000	52906000	0	0	0	0	0	0	0	0	0	564	2947	534	3153;3154	4109;4110	4110			2	
AAQGEPQVQFK	1	Acetyl (Protein N-term)	1243.6197	0.619701	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	4.97	7		4	5	6					5	5	7	5	49.445	45.194	2	2.5297E-24	20393	160513_QHF_FH_JSI12Kac_2	183.65	167.44			0.92275	0.96529	273.09	16	12	Median	1.5185	1.2094	373.28	3	3	Median	0.44247	0.51024	305.18	4	3	Median	0.94589	0.9411	306.11	5	3	Median	31.861	33.556	244.91	4	3	Linear	19799000000	8480900000	11318000000	4847600000	2277400000	2570200000	5527400000	2936800000	2590600000	6411800000	3078900000	3332900000	3011900000	187870000	2824100000	565	2021	535	3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176	4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143	4142			33	
AAQHGVCSVLK	1	Unmodified	1168.6023	0.6022768	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	16.359	16.385	3	0.00047668	13555	160511_QHF_FH_JSI11i_3	73.435	57.806			0.63855	0.62618	9.1518	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61651	0.58694	NaN	1	1	Median	0.66138	0.66804	NaN	1	1	Median	140600000	77214000	63383000	0	0	0	0	0	0	56232000	33293000	22938000	84365000	43921000	40444000	566	2904	536	3177;3178;3179	4144;4145;4146	4144			3	
AAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPK	1	Unmodified	3360.7513	0.75134766	3002	Q5VZF2	MBNL2	Muscleblind-like protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.77	100.77	4	7.4056E-08	89783	160511_QHF_FH_JSI11i_3	58.498	42.097			0.82047	0.77379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82047	0.77379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75613000	26293000	49320000	0	0	0	0	0	0	75613000	26293000	49320000	0	0	0	567	3002	537	3180	4147	4147			1	
AAQIELLQLLVQIAAENNLGEGVIVK	1	Unmodified	2745.564	0.56403061	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS			12.5	6.06		1							3	3	1			102.64	96.595	3	1.2191E-65	53816	160513_QHF_FH_JSI9Kac_6	200.95	180.75			0.89052	0.76322	45.722	4	1	Median	0.86548	0.74095	42.042	3	1	Median	0.91629	1.096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	820830000	431710000	389130000	279240000	136290000	142950000	541590000	295420000	246180000	0	0	0	0	0	0	568	40	538	3181;3182;3183;3184	4148;4149;4150;4151;4152	4149			5	
AAQIFITELTLR	0	Unmodified	1374.7871	0.78710068	2483	Q13952	NFYC	Nuclear transcription factor Y subunit gamma	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	89.583	88.669	2	0.0081749	76685	160511_QHF_FH_JSI12i_2	50.284	35.604			0.69074	0.72243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69074	0.72243	NaN	1	0	Median	7106300	4641900	2464400	0	0	0	0	0	0	0	0	0	7106300	4641900	2464400	569	2483	539	3185	4153	4153			1	
AAQKGFNK	2	Acetyl (K)	904.47667	0.47666558	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		18.115	9.3622	2	0.016384	7788	160513_QHF_FH_JSI11Kac_4	65.676	42.785			0.60373	0.65805	48.053	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7751	0.92433	NaN	1	0	Median	0.47025	0.46848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12656000	7758700	4897500	0	0	0	4233600	2423300	1810400	8422500	5335400	3087100	0	0	0	570	2094	540	3186;3187	4154;4155	4155	2180;2181		2	
AAQKNIDR	1	Acetyl (K)	956.50394	0.50394296	3235	Q7L5Y9	MAEA	Macrophage erythroblast attacher	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	12.955	5.6926	2	3.4546E-05	5525	160513_QHF_FH_JSI11Kac_3	131.41	78.057			0.67487	0.74849	17.555	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6291	0.74849	NaN	1	0	Median	0.67487	0.66814	NaN	1	0	Median	0.85656	0.94293	NaN	1	0	Median	75068000	40325000	34743000	0	0	0	20256000	10850000	9406000	30681000	17108000	13573000	24131000	12367000	11764000	571	3235	541	3188;3189;3190	4156;4157;4158;4159;4160	4156	2808		5	
AAQLAIR	0	Unmodified	741.44972	0.44972255	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.54	4	4	4				2	4	3	5	6	4	6	23.416	19.166	2	5.2017E-09	15979	160511_QHF_FH_JSI12i_3	159.75	37.253			0.91672	0.95191	18.083	18	0	Median	1.2062	1.0068	28.612	4	0	Median	0.8392	1.0004	8.9317	5	0	Median	1.0115	0.97827	15.406	4	0	Median	0.76774	0.84526	18.279	5	0	Median	12145000000	6080300000	6064500000	1775600000	833290000	942300000	2394200000	1264100000	1130100000	4762100000	2296900000	2465200000	3212900000	1686000000	1526900000	572	2037	542	3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211	4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187	4187			27	
AAQLATEIADIK	1	Unmodified	1242.682	0.68196691	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	59.664	59.123	2	0.00020089	53814	160511_QHF_FH_JSI12i_1	96.229	57.937			1.0987	1.102	50.806	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78791	0.76943	NaN	1	1	Median	1.5321	1.5784	NaN	1	1	Median	85206000	46457000	38749000	0	0	0	0	0	0	54297000	34266000	20031000	30909000	12191000	18718000	573	2627	543	3212;3213	4188;4189	4189			2	
AAQLGFK	1	Unmodified	733.41227	0.41227441	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	3	2	2	24.015	23.205	2	0.018158	19283	160511_QHF_FH_JSI11i_2	60.358	23.802			0.95077	1.0893	16.405	8	0	Median	1.092	0.92296	33.105	2	0	Median	0.95781	1.1549	8.8749	3	0	Plateau	1.0005	0.9934	13.427	2	0	Median	1.0308	1.1299	NaN	1	0	Median	1420300000	695300000	724980000	253830000	115770000	138060000	426040000	241190000	184850000	495160000	227020000	268140000	245250000	111320000	133930000	574	935	544	3214;3215;3216;3217;3218;3219;3220;3221;3222	4190;4191;4192;4193;4194;4195;4196;4197;4198;4199;4200	4198			11	
AAQLLEEK	1	Acetyl (Protein N-term)	942.50221	0.50221163	3125	Q6PJ69	TRIM65	Tripartite motif-containing protein 65	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	58.645	57.987	2	0.010272	52744	160511_QHF_FH_JSI12i_1	42.287	22.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	575	3125	545	3223	4201	4201			1	
AAQLQGLGR	0	Unmodified	912.51411	0.51411372	1561	P43353	ALDH3B1	Aldehyde dehydrogenase family 3 member B1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	23.489	22.28	2	0.0041358	18570	160511_QHF_FH_JSI12i_2	57.281	30.679			0.59234	0.61762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59234	0.61762	NaN	1	0	Median	16664000	8506100	8158400	0	0	0	0	0	0	0	0	0	16664000	8506100	8158400	576	1561	546	3224	4202	4202			1	
AAQLQHSEK	1	Unmodified	1010.5145	0.51450765	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5.75	5.36		3	6					3		1	1	6	4	5.0574	2.3904	2;3	1.5142E-16	2466	160511_QHF_FH_JSI12i_3	177.91	134.67			0.91183	0.89151	24.63	11	1	Median	1.4721	1.2338	NaN	1	0	Median	0.64472	0.76967	NaN	1	0	Median	0.77313	0.80621	25.418	5	1	Median	1.0069	1.0369	12.854	4	0	Median	1505000000	787160000	717830000	69650000	24788000	44863000	3747200	1838700	1908500	585840000	312810000	273030000	845760000	447720000	398030000	577	2727	547	3225;3226;3227;3228;3229;3230;3231;3232;3233;3234;3235;3236	4203;4204;4205;4206;4207;4208;4209;4210;4211;4212	4210			9	
AAQLVDK	1	Unmodified	743.41775	0.41775372	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		10.538	10.41	2	0.014075	8393	160511_QHF_FH_JSI11i_1	66.799	6.0004			1.0897	1.0681	23.995	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0897	1.0681	23.995	2	0	Median	NaN	NaN	NaN	0	0	Median	3795400000	1979000000	1816300000	0	0	0	0	0	0	3795400000	1979000000	1816300000	0	0	0	578	3951	548	3237;3238	4213;4214	4214			2	
AAQMHSGYQR	0	Unmodified	1147.5193	0.51927545	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							3	4	2		6.0647	5.6968	2;3	2.724E-06	3646	160511_QHF_FH_JSI9i_3	90.108	78.895			1.0722	1.0243	17.193	9	3	Median	1.2744	1.096	15.111	3	1	Median	0.91862	1.0484	19.708	4	2	Median	0.98436	0.91834	14.653	2	0	Median	NaN	NaN	NaN	0	0	Median	1357600000	658900000	698700000	316270000	127930000	188340000	782030000	408790000	373230000	259300000	122170000	137130000	0	0	0	579	4197	549	3239;3240;3241;3242;3243;3244;3245;3246;3247	4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226	4222			12	
AAQMHSGYQR	0	Oxidation (M)	1163.5142	0.51419008	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			4.6256	4.1374	3	0.00061444	2109	160511_QHF_FH_JSI9i_3	61.213	49.993			0.78799	0.90084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78799	0.90084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	270300000	117020000	153280000	117060000	30703000	86359000	153240000	86321000	66921000	0	0	0	0	0	0	580	4197	549	3248;3249	4227;4228	4228		2407	1	
AAQMLQSNK	1	Unmodified	989.49641	0.49641475	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	11.617	11.219	2	7.0399E-05	9132	160511_QHF_FH_JSI12i_1	114.89	82.054			0.51762	0.53077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51762	0.53077	NaN	1	1	Median	47290000	28876000	18414000	0	0	0	0	0	0	0	0	0	47290000	28876000	18414000	581	3022	550	3250;3251	4229;4230	4230			2	
AAQNISK	1	Unmodified	730.39735	0.39735263	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.35	1	4	4			1	1			3	2	4	2	5.8515	3.3091	2	0.0044308	3777	160513_QHF_FH_JSI9Kac_3	104.45	35.015			1.054	1.0645	41.599	11	3	Median	1.1369	0.95357	65.897	3	2	Plateau	0.82233	0.98964	16.165	2	0	Median	1.3809	1.3624	27.094	4	1	Linear	0.94906	1.0173	23.858	2	0	Median	5620100000	2943400000	2676700000	444750000	191060000	253690000	487090000	260690000	226400000	4199500000	2258700000	1940900000	488760000	232970000	255790000	582	4296	551	3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262	4231;4232;4233;4234;4235;4236;4237;4238	4235			8	
AAQNISKTIATSQNR	1	Acetyl (K)	1643.8591	0.85909643	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.498						6	5				3	4	4	42.899	33.435	2;3	6.6058E-17	19219	160513_QHF_FH_JSI11Kac_3	146.07	120.63			0.72257	0.78713	76.183	11	2	Median	NaN	NaN	NaN	0	0	Median	0.75977	1.0753	10.613	3	0	Plateau	0.39716	0.38705	46.198	4	1	Median	0.76483	0.83708	67.448	4	1	Median	94773000	61461000	33312000	0	0	0	16795000	9234300	7560400	57508000	43192000	14316000	20471000	9034400	11436000	583	4296	552	3263;3264;3265;3266;3267;3268;3269;3270;3271;3272;3273	4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251;4252;4253;4254;4255;4256	4242	3112		18	
AAQNSGEAEYIEK	1	Unmodified	1408.647	0.64703797	883	P07942	LAMB1	Laminin subunit beta-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	21.782	21.279	2	5.5769E-05	18165	160511_QHF_FH_JSI9i_1	76.332	48.59			1.1094	1.1513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1094	1.1513	NaN	1	1	Median	30685000	13860000	16825000	0	0	0	0	0	0	0	0	0	30685000	13860000	16825000	584	883	553	3274;3275	4257;4258	4258			2	
AAQPALLYLVPFTLLPLLTMAYLK	1	Unmodified	2659.5427	0.54269023	3710	Q8TCT6	SPPL3	Signal peptide peptidase-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			105.98	98.503	3	1.8024E-08	55871	160513_QHF_FH_JSI9Kac_6	77.649	74.054			1.0799	1.0743	8.7025	2	0	Median	1.3632	1.1424	NaN	1	0	Median	0.85543	1.0101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	238670000	114740000	123930000	137220000	62427000	74795000	101450000	52312000	49133000	0	0	0	0	0	0	585	3710	554	3276;3277	4259;4260;4261	4259			3	
AAQQAASSSGQGQQAQTPTGK	1	Unmodified	2000.9512	0.95115891	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		9.6171	9.2533	3	2.2862E-10	6942	160511_QHF_FH_JSI10i_1	111.4	97.011			0.97482	0.95326	6.7924	3	0	Median	1.266	1.0452	NaN	1	0	Median	0.7811	0.91542	NaN	1	0	Median	0.97482	0.95326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	233380000	119430000	113950000	80138000	39044000	41095000	96952000	48787000	48165000	56287000	31597000	24690000	0	0	0	586	1633	555	3278;3279;3280	4262;4263;4264;4265	4263			4	
AAQQQEEQEEKEEEDDEQTLHR	1	Unmodified	2698.159	0.15903902	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.191	20.674	4	6.8331E-47	17818	160511_QHF_FH_JSI12i_1	206.85	201.14			0.90578	0.86397	11.329	4	0	Median	0.95255	0.78589	NaN	1	0	Median	0.75511	0.89172	NaN	1	0	Median	0.86131	0.83709	NaN	1	0	Median	1.0041	1.0242	NaN	1	0	Median	447420000	204650000	242770000	80196000	35627000	44570000	109880000	50291000	59593000	124330000	55457000	68870000	133010000	63275000	69735000	587	2082	556	3281;3282;3283;3284	4266;4267;4268;4269;4270;4271;4272;4273	4268			8	
AAQRDNEEETTDDPRK	1	Unmodified	1873.8402	0.84021148	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				5.9658	5.5505	3	0.033205	3555	160511_QHF_FH_JSI9i_2	44.807	38.685			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7591000	7591000	0	7591000	7591000	0	0	0	0	0	0	0	0	0	0	588	4271	557	3285	4274	4274			1	
AAQRPLR	0	Acetyl (Protein N-term)	852.49298	0.49298435	3822	Q8WZ82	OVCA2	Ovarian cancer-associated gene 2 protein	yes	yes	0	1	0	1		By MS/MS			2	0		1									1			10.7	10.174	2	0.024569	8058	160511_QHF_FH_JSI10i_2	40.686	27.697			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	589	3822	558	3286	4275	4275			1	
AAQSANISVR	0	Unmodified	1015.5411	0.54105675	1448	P35914	HMGCL	Hydroxymethylglutaryl-CoA lyase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	14.841	14.576	2	0.017691	12002	160511_QHF_FH_JSI11i_1	42.395	19.352			0.80559	0.75448	19.216	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71677	0.84952	NaN	1	0	Median	0.80559	0.75448	NaN	1	0	Median	1.0496	1.0987	NaN	1	0	Median	155920000	88548000	67377000	0	0	0	43038000	25878000	17160000	70727000	44146000	26581000	42159000	18524000	23635000	590	1448	559	3287;3288;3289	4276	4276			1	
AAQSLLNK	1	Unmodified	843.48142	0.48141661	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.831	4	3	3							2	2	3	3	19.186	18.795	2	0.0047811	15165	160511_QHF_FH_JSI12i_3	75.189	50.246			1.02	1.0424	37.384	10	3	Median	1.5202	1.2838	16.993	2	0	Median	0.75216	0.90735	13.313	2	0	Median	0.92551	0.92557	36.697	3	1	Median	1.4027	1.4414	47.541	3	2	Median	1307300000	659140000	648120000	249740000	115570000	134170000	308070000	168180000	139880000	442330000	223660000	218670000	307120000	151730000	155390000	591	5017;5423	560	3290;3291;3292;3293;3294;3295;3296;3297;3298;3299	4277;4278;4279;4280	4279			4	
AAQTAEDAMQIMEQMTK	1	Unmodified	1895.8427	0.84271936	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.4	0.49	3	2										3	2	89.242	88.74	2;3	1.0851E-49	80789	160511_QHF_FH_JSI11i_1	178.23	164.08			0.88495	0.8814	21.578	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77638	0.75668	NaN	1	1	Median	1.0087	1.0267	NaN	1	1	Median	26158000	8118500	18039000	0	0	0	0	0	0	7665200	5429200	2236000	18493000	2689300	15803000	592	1360	561	3300;3301;3302;3303;3304	4281;4282;4283;4284;4285	4282			5	
AAQTAERLDQDINATK	1	Unmodified	1743.8751	0.87514042	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	30.801	30.257	2;3	2.9592E-07	25391	160511_QHF_FH_JSI12i_3	127.83	111.3			1.2327	1.1451	23.229	7	2	Median	1.3349	1.133	NaN	1	0	Median	0.90268	1.1191	NaN	1	1	Median	1.2317	1.1982	6.4128	2	0	Median	1.3117	1.4016	39.635	3	1	Median	472050000	225860000	246190000	60823000	26511000	34312000	69671000	41521000	28149000	162560000	76434000	86123000	179000000	81398000	97602000	593	2690	562	3305;3306;3307;3308;3309;3310;3311	4286;4287;4288;4289;4290;4291;4292;4293;4294;4295;4296	4293			11	
AAQTTIETAIHSLIETLK	1	Unmodified	1939.0626	0.062606842	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102	102.01	3	4.3016E-07	91124	160511_QHF_FH_JSI11i_3	106.39	90.794			0.75506	0.71137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75506	0.71137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204910000	40028000	164880000	0	0	0	0	0	0	75266000	40028000	35238000	129640000	0	129640000	594	625	563	3312;3313	4297;4298	4297			2	
AAQVAQDEEIAR	0	Unmodified	1299.6419	0.64189301	3408	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	21.431	20.593	2	8.4763E-10	17793	160511_QHF_FH_JSI11i_1	121.61	72.072			1.0504	0.97934	5.4312	2	0	Median	1.2474	1.0177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88448	0.94244	NaN	1	0	Median	207770000	86691000	121080000	102070000	32392000	69681000	0	0	0	0	0	0	105700000	54299000	51399000	595	3408	564	3314;3315;3316;3317;3318	4299;4300;4301;4302	4299			4	
AAQVFALLFVTEYLTK	1	Unmodified	1813.0026	0.0025727675	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	100.09	90.786	3	1.8718E-05	52416	160513_QHF_FH_JSI9Kac_6	96.163	80.025			0.93408	0.90148	34.978	2	1	Median	0.81287	0.70395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0734	1.1544	NaN	1	1	Median	73400000	37906000	35494000	46499000	26037000	20462000	0	0	0	0	0	0	26901000	11869000	15032000	596	344	565	3319;3320	4303;4304	4303			2	
AAQVGLLFLK	1	Unmodified	1058.6488	0.64881629	3080	Q6NXR4	TTI2	TELO2-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.2		4	1					3		2	2	2	2	80.553	77.08	2	1.3912E-09	68293	160511_QHF_FH_JSI12i_3	134.48	114.7			1.1354	1.1505	14.178	7	0	Median	1.3936	1.1523	0.21975	2	0	Median	0.97834	1.1663	16.39	2	0	Median	1.2611	1.2423	NaN	1	0	Median	0.90144	0.95334	16.465	2	0	Median	100220000	47927000	52297000	11035000	5318200	5717000	12499000	6427500	6071900	12331000	6585100	5745400	64359000	29596000	34763000	597	3080	566	3321;3322;3323;3324;3325;3326;3327;3328	4305;4306;4307;4308;4309;4310;4311;4312	4311			8	
AAQYQVNQAAAAQAAATAAAMTQSAVK	1	Unmodified	2605.2918	0.29184828	4947	Q9NR56	MBNL1	Muscleblind-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.098	86.648	3	6.0801E-21	78944	160511_QHF_FH_JSI12i_1	117.21	110.18			0.9647	0.96058	6.7393	4	0	Median	1.1177	0.90886	NaN	1	0	Median	0.86136	1.0153	NaN	1	0	Median	1.0497	1.0254	NaN	1	0	Median	0.88661	0.90733	NaN	1	0	Median	435430000	235420000	200020000	83516000	44079000	39438000	142870000	80634000	62237000	141840000	75214000	66628000	67206000	35492000	31714000	598	4947	567	3329;3330;3331;3332	4313;4314;4315;4316;4317;4318;4319;4320;4321;4322;4323;4324	4319			12	
AAREECPVFTPPGGETLDQVK	1	Unmodified	2300.1107	0.11069602	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		58.79	58.79	3	4.0056E-05	52095	160511_QHF_FH_JSI11i_3	63.69	47.748			0.96815	0.9299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96815	0.9299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61907000	21402000	40506000	0	0	0	0	0	0	61907000	21402000	40506000	0	0	0	599	4915	568	3333	4325	4325			1	
AARELLTLDEK	1	Unmodified	1257.6929	0.69286595	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			40.281	38.776	3	0.00022374	32402	160511_QHF_FH_JSI10i_3	82.543	57.106			0.036064	0.041181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.036064	0.041181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38750000	35463000	3286900	0	0	0	38750000	35463000	3286900	0	0	0	0	0	0	600	1593	569	3334	4326	4326			1	
AAREPNIDR	0	Unmodified	1040.5363	0.53630573	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.83	0.373		1	5							2	3	1		8.842	8.3821	2;3	0.00061162	6373	160511_QHF_FH_JSI10i_2	73.841	47.055			1.0035	1.0095	5.1156	6	1	Median	1.2533	1.0094	2.6659	2	0	Median	0.85056	0.99065	4.9749	3	1	Plateau	1.1839	1.0988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1403500000	708190000	695300000	783990000	367210000	416780000	568490000	315800000	252690000	51011000	25178000	25832000	0	0	0	601	1237	570	3335;3336;3337;3338;3339;3340	4327;4328;4329;4330;4331;4332	4332			6	
AASAAAAELQASGGPR	0	Acetyl (Protein N-term)	1468.727	0.72701962	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	56.978	56.243	2	9.5536E-08	50723	160511_QHF_FH_JSI10i_1	147.55	137.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	602	4861	571	3341;3342;3343	4333;4334;4335	4334			3	
AASAAAASAAAASAASGSPGPGEGSAGGEK	1	Acetyl (Protein N-term)	2428.1102	0.11023833	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	3.5	12			2						3	3	5	3	60.157	58.685	2;3	5.3141E-121	53140	160511_QHF_FH_JSI10i_1	124.63	115.35			1.1015	1.0726	7.1436	8	0	Median	1.2554	1.0385	2.0947	2	0	Median	0.95284	1.1226	3.9601	2	0	Median	1.1093	1.0873	9.0904	2	0	Median	1.0578	1.1043	13.679	2	0	Median	2606000000	1201900000	1404100000	807230000	352400000	454830000	426490000	212740000	213750000	810090000	341160000	468940000	562210000	295600000	266620000	603	2380	572	3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357	4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351	4342			16	
AASAAFQENVGR	0	Unmodified	1219.5945	0.59454889	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	2	3	1	27.389	24.194	2	9.4383E-06	20905	160511_QHF_FH_JSI9i_2	119.16	107.31			0.93653	0.95444	18.262	7	1	Median	1.2851	1.1082	NaN	1	0	Median	0.76686	0.90418	23.081	2	0	Median	0.87149	0.84424	24.162	3	1	Plateau	0.85347	0.91359	NaN	1	0	Median	268510000	137960000	130550000	45026000	20063000	24964000	40202000	22629000	17573000	141540000	73703000	67841000	41742000	21570000	20172000	604	4424	573	3358;3359;3360;3361;3362;3363;3364	4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362	4358			11	
AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK	1	Unmodified	3668.7123	0.71233221	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.559	13	2	1							5	5	3	3	28.544	27.852	3;4;5	1.7117E-169	25022	160511_QHF_FH_JSI12i_1	255.99	238.76			0.95302	1.0024	11.551	15	1	Median	1.1304	0.92889	16.696	4	1	Linear	0.85219	1.0024	9.0097	5	0	Median	0.91904	0.88964	1.3456	3	0	Plateau	0.97811	1.0213	2.9201	3	0	Median	3264600000	1468800000	1795800000	706140000	304830000	401300000	746340000	349810000	396530000	880420000	392690000	487740000	931680000	421440000	510240000	605	5383	574	3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379;3380	4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395	4376			33	
AASAAREELK	1	Unmodified	1044.5564	0.55637247	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.6986	7.6986	2	0.009137	5331	160511_QHF_FH_JSI11i_3	72.275	11.446			1.1835	1.1115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1835	1.1115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	226770000	107050000	119720000	0	0	0	0	0	0	226770000	107050000	119720000	0	0	0	606	2207	575	3381	4396	4396			1	
AASAATAAPTATPAAQESGTIPK	1	Unmodified	2082.0593	0.059312378	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	40.346	39.647	2;3	1.2965E-10	35765	160511_QHF_FH_JSI11i_1	107.35	94.367			0.91804	0.94234	22.227	9	3	Median	0.91804	0.74772	12.928	3	2	Plateau	0.82584	0.9626	3.0082	2	0	Median	1.1146	1.074	22.569	2	1	Median	0.96002	1.0022	4.6282	2	0	Median	437040000	223000000	214040000	92464000	44686000	47779000	135640000	77787000	57857000	87264000	39171000	48093000	121660000	61354000	60309000	607	93	576	3382;3383;3384;3385;3386;3387;3388;3389;3390	4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409	4399			13	
AASAFFTYVSLSQEGR	0	Unmodified	1732.842	0.84204938	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	4	2	2	1	82.032	74.803	2;3	5.4153E-160	38811	160513_QHF_FH_JSI12Kac_6	374.54	343.04			1.3949	1.2212	19.955	8	2	Median	1.4359	1.2289	18.576	3	1	Plateau	0.79694	0.95728	13.962	2	1	Median	1.4017	1.3625	4.7139	2	0	Median	1.0448	1.0978	NaN	1	0	Median	797090000	421570000	375520000	230320000	103470000	126860000	366450000	226850000	139600000	129730000	53102000	76625000	70591000	38155000	32436000	608	99	577	3391;3392;3393;3394;3395;3396;3397;3398;3399	4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420	4418			10	
AASAGVPYHGEVPVSLAR	0	Unmodified	1779.9268	0.92678206	234	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.624	53.505	3	5.7265E-05	47346	160511_QHF_FH_JSI11i_3	67.274	55.801			1.097	1.085	1.7341	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.187	1.0984	NaN	1	0	Median	1.0138	1.0717	NaN	1	1	Median	145660000	66657000	78999000	0	0	0	0	0	0	87246000	37008000	50238000	58411000	29650000	28761000	609	234	578	3400;3401	4421;4422	4421			2	
AASAPAK	1	Unmodified	614.33878	0.33877512	2409	Q13428	TCOF1	Treacle protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	2.8795	2.6543	2	0.025021	1234	160511_QHF_FH_JSI11i_1	54.787	38.232			0.84842	0.88915	16.116	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64555	0.76031	NaN	1	0	Median	1.0612	1.0494	NaN	1	0	Median	0.84842	0.88915	NaN	1	0	Median	591210000	288990000	302220000	0	0	0	193200000	92749000	100450000	198030000	90829000	107200000	199990000	105410000	94576000	610	2409	580	3402;3403;3404	4423;4424;4425;4426	4423			4	
AASAPYFEVLEK	1	Unmodified	1323.6711	0.67106787	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		40.037	39.578	2;3	0.00023584	62078	160511_QHF_FH_JSI10i_1	78.136	60.701			0.99729	0.98898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99729	0.98898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	210020000	99820000	110200000	0	0	0	0	0	0	210020000	99820000	110200000	0	0	0	611	4398	581	3405;3406	4427;4428	4427			2	
AASAYAVGDVK	1	Unmodified	1050.5346	0.53457439	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7	6	2					2					2		2	29.345	24.866	2	0.00016355	21956	160511_QHF_FH_JSI12i_1	82.831	67.966			0.35578	0.37446	139.76	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35578	0.37446	139.76	2	1	Median	202770000	98488000	104290000	0	0	0	0	0	0	0	0	0	202770000	98488000	104290000	612	1043	582	3407;3408;3409;3410	4429;4430;4431;4432;4433	4429			5	
AASCVLLHTGQK	1	Acetyl (Protein N-term)	1325.6762	0.67617003	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	7.75	6.26	1	1					2				1	1	2	51.759	45.849	2	1.8706E-06	41742	160511_QHF_FH_JSI12i_1	123.51	109.31			1.0247	1.1641	23.156	4	1	Median	NaN	NaN	NaN	0	0	Median	0.98091	1.1682	NaN	1	0	Median	0.92353	0.89934	NaN	1	0	Median	1.2717	1.3555	22.032	2	1	Median	258130000	131710000	126420000	0	0	0	4199000	2150500	2048500	9730600	5441600	4289100	244200000	124120000	120080000	613	1054	583	3411;3412;3413;3414	4434;4435;4436	4435			3	
AASDELSK	1	Unmodified	819.39741	0.39741221	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.2595	5.9485	2	0.001145	5724	160511_QHF_FH_JSI9i_1	93.429	48.736			0.89008	0.99474	11.225	7	0	Median	1.5218	1.2036	NaN	1	0	Median	0.82744	0.9708	3.4455	2	0	Median	0.98714	0.9692	15.744	2	0	Median	0.88313	0.9514	8.2408	2	0	Median	4938700000	2411200000	2527400000	1030200000	432770000	597380000	1448300000	723980000	724300000	1293600000	743820000	549790000	1166600000	510680000	655950000	614	1139	584	3415;3416;3417;3418;3419;3420;3421	4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449	4445			13	
AASDIAMTELPPTHPIR	0	Unmodified	1818.9298	0.92981853	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.14	4	23	15					19	3	12	9	23	20	61.86	57.372	2;3;4	5.3732E-137	49407	160511_QHF_FH_JSI11i_2	350.96	334.02			1.0598	1.0507	14.036	47	16	Median	1.1966	0.9946	10.075	10	4	Median	0.84496	1.0084	7.7088	7	0	Median	1.0682	1.0632	13.637	15	8	Median	1.0136	1.1168	17.126	15	4	Median	10153000000	5182700000	4970000000	1564000000	725740000	838220000	1899900000	1048100000	851830000	3311300000	1788700000	1522700000	3377500000	1620200000	1757300000	615	1990	585	3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483;3484;3485	4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567;4568;4569;4570;4571;4572;4573;4574;4575;4576;4577	4512			121	
AASDIAMTELPPTHPIR	0	Oxidation (M)	1834.9247	0.92473315	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.21	6.35		11	4					18		9	5	8	11	54.676	47.295	2;3	6.6932E-32	40396	160511_QHF_FH_JSI12i_3	144.47	120.13			1.0284	0.99816	18.719	24	5	Median	1.1176	0.9583	13.564	7	1	Median	0.83592	1.0386	13.179	3	0	Plateau	1.0507	1.0328	11.507	5	2	Median	1.1635	1.0473	26.958	9	2	Plateau	1072600000	498750000	573880000	197440000	98459000	98981000	184530000	81787000	102740000	336460000	145860000	190600000	354190000	172640000	181550000	616	1990	585	3486;3487;3488;3489;3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515;3516;3517;3518	4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618	4618		1652	41	
AASDIWKPVLSIDTEPR	1	Unmodified	1896.9945	0.99452728	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	78.957	78.347	3	7.127E-06	69872	160511_QHF_FH_JSI11i_3	95.197	84.43			0.74181	0.83623	12.117	5	2	Median	0.77023	0.65371	NaN	1	1	Median	0.71246	0.85223	2.6808	2	1	Median	0.90785	0.86614	NaN	1	0	Median	0.73372	0.7538	NaN	1	0	Median	315790000	161710000	154070000	23386000	10757000	12629000	60378000	34283000	26094000	166580000	84425000	82157000	65440000	32249000	33191000	617	4143	586	3519;3520;3521;3522;3523	4619;4620;4621;4622;4623;4624;4625	4619			7	
AASEAPEEEVSLPWVHLAYQR	0	Unmodified	2381.1652	0.16517443	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		87.633	87.633	3	0.00095617	78244	160511_QHF_FH_JSI11i_3	58.848	50.56			1.1256	1.0669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1256	1.0669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26939000	15696000	11243000	0	0	0	0	0	0	26939000	15696000	11243000	0	0	0	618	3009	587	3524	4626	4626			0	
AASEELLEKSSYPSSEEKSSEK	3	Unmodified	2414.1337	0.13365911	3194	Q6ZV73	FGD6	FYVE, RhoGEF and PH domain-containing protein 6	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2	0		2								1	1			19.27	18.429	4	0.034258	15486	160511_QHF_FH_JSI9i_2	28.65	7.4496			0.012817	0.013117	19.949	2	2	Median	0.017742	0.015104	NaN	1	1	Median	0.0092592	0.011391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	654110000	645900000	8212600	145910000	142840000	3068300	508200000	503060000	5144400	0	0	0	0	0	0	619	3194	588	3525;3526	4627;4628;4629	4627			3	
AASEQQADTSGGDSPK	1	Unmodified	1547.67	0.66995825	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	7.0735	6.7213	2	3.8751E-17	4503	160511_QHF_FH_JSI9i_1	127.02	81.881			0.89922	0.90805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89922	0.90805	NaN	1	1	Median	27109000	15077000	12032000	0	0	0	0	0	0	0	0	0	27109000	15077000	12032000	620	2134	589	3527;3528	4630;4631	4631			2	
AASGEAKPK	2	Acetyl (K)	899.47125	0.47124585	969;1099;1097	P10412;P16401;P16403	HIST1H1E;HIST1H1B;HIST1H1C	Histone H1.4;Histone H1.5;Histone H1.2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.7				1	3	3					2	3	2	8.18	0.89594	2	3.249E-07	3211	160513_QHF_FH_JSI11Kac_3	141.48	82.563			0.5586	0.61097	47.437	7	0	Median	NaN	NaN	NaN	0	0	Median	0.93738	1.1266	2.9138	2	0	Median	0.42751	0.41547	12.488	3	0	Median	0.57433	0.63064	4.4813	2	0	Median	446320000	289750000	156570000	0	0	0	91607000	44944000	46663000	240150000	174700000	65452000	114560000	70109000	44451000	621	969;1097;1099	590	3529;3530;3531;3532;3533;3534;3535	4632;4633;4634;4635;4636;4637;4638	4633	732		7	
AASGEGKPK	2	Acetyl (K)	885.4556	0.45559579	1098	P16402	HIST1H1D	Histone H1.3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	1.57					1	3			2	1	3	1	1	5.6774	-1.4773	2	0.0054667	1948	160513_QHF_FH_JSI12Kac_3	72.789	29.789			0.85031	0.98458	37.237	6	0	Median	0.79606	0.68153	NaN	1	0	Median	0.81764	0.99453	42.101	3	0	Plateau	0.87206	0.86192	NaN	1	0	Median	0.90303	0.97473	NaN	1	0	Median	466490000	251380000	215120000	8787300	6337600	2449800	126010000	66676000	59334000	202050000	106540000	95507000	129650000	71820000	57826000	622	1098	591	3536;3537;3538;3539;3540;3541	4639;4640;4641;4642;4643;4644;4645;4646;4647	4643	948		9	
AASGEIK	1	Unmodified	674.3599	0.35990449	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		5.123	4.9509	2	0.019031	2720	160511_QHF_FH_JSI11i_1	58.981	25.243			0.98437	1.0345	15.51	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99982	1.1544	NaN	1	0	Median	0.96916	0.927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2305900000	1270800000	1035000000	0	0	0	1260000000	711750000	548220000	1045900000	559100000	486790000	0	0	0	623	2480	592	3542;3543	4648	4648			1	
AASGESGTSGGGGSTEEAFMTFYSEVK	1	Acetyl (Protein N-term)	2685.1388	0.13882084	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	101.02	100.86	3	8.0014E-21	91558	160511_QHF_FH_JSI11i_1	52.707	51.252			1.0395	1.0288	158.8	4	2	Median	1.163	0.94066	274.79	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1359	1.0901	NaN	1	0	Median	0.95121	0.971	NaN	1	0	Median	269820000	127960000	141860000	91284000	39103000	52182000	0	0	0	61817000	27458000	34359000	116710000	61398000	55316000	624	587	593	3544;3545;3546;3547	4649;4650;4651;4652	4649			4	
AASGFNAMEDAQTLR	0	Unmodified	1580.7253	0.72530506	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	2	1	2	53.441	52.559	2	3.0136E-06	46029	160511_QHF_FH_JSI9i_2	121.04	111.61			1.0283	0.94575	9.0941	8	3	Median	1.1659	0.96441	9.3237	3	2	Median	0.76755	0.91578	1.7922	2	0	Median	0.9541	0.91276	NaN	1	0	Median	1.0283	1.0964	2.3174	2	1	Median	502760000	258800000	243960000	152700000	70623000	82081000	128230000	80564000	47669000	108310000	53416000	54898000	113510000	54197000	59309000	625	932	594	3548;3549;3550;3551;3552;3553;3554;3555	4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664	4662			12	
AASGFNAMEDAQTLRK	1	Oxidation (M)	1724.8152	0.8151827	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		31.447	30.756	3	3.3778E-05	25591	160511_QHF_FH_JSI10i_3	84.41	72.718			1.0828	1.1578	5.0438	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91832	1.1173	NaN	1	0	Median	1.2767	1.1999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187260000	88417000	98840000	0	0	0	81755000	45342000	36413000	105500000	43075000	62427000	0	0	0	626	932	595	3556;3557	4665;4666;4667	4667		507	3	
AASGFNAMEDAQTLRK	1	Unmodified	1708.8203	0.82026808	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.54	3.63		6	6						1	3	4	3	3	45.899	44.458	2;3	9.9931E-53	39015	160511_QHF_FH_JSI11i_3	224.42	185.55			0.94972	1.0013	55.161	13	5	Median	1.1335	0.97023	112.5	3	2	Median	0.87797	1.0283	37.8	4	1	Median	0.96043	0.92577	12.83	3	0	Plateau	0.70638	0.72074	30.753	3	2	Plateau	3636800000	1853100000	1783700000	481680000	231190000	250490000	1352600000	758390000	594180000	1344600000	593040000	751590000	457880000	270470000	187410000	627	932	595	3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570	4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684	4670			17	
AASGSGMAQK	1	Acetyl (Protein N-term)	948.43348	0.43348014	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.9	3			2						1	1	2	1	13.453	9.5709	2	8.3092E-11	9174	160511_QHF_FH_JSI12i_1	90.657	49.154			0.94326	0.9522	45.972	4	1	Median	NaN	NaN	NaN	0	0	Median	0.99798	1.1009	NaN	1	0	Median	0.62069	0.60039	55.544	2	1	Median	0.96854	1.0197	NaN	1	0	Median	542470000	328540000	213930000	0	0	0	2415700	1445300	970410	219330000	145830000	73494000	320730000	181260000	139470000	628	3905	596	3571;3572;3573;3574;3575	4685;4686;4687;4688;4689;4690	4687			6	
AASGSGMAQK	1	Acetyl (Protein N-term);Oxidation (M)	964.42839	0.42839476	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	1	1	0			By MS/MS	By MS/MS	11	0				2								1	1	5.8278	-1.6916	2	0.00076222	1633	160513_QHF_FH_JSI11Kac_1	39.022	29.035			0.83356	0.8388	4.8498	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91109	0.86806	NaN	1	0	Median	0.76262	0.81052	NaN	1	0	Median	7965400	4260500	3704900	0	0	0	0	0	0	3580000	2004600	1575300	4385400	2255800	2129600	629	3905	596	3576;3577	4691;4692	4692		2340	2	
AASGYPVK	1	Unmodified	791.41775	0.41775372	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	11.693	10.079	2	0.0012793	7980	160511_QHF_FH_JSI9i_1	91.626	45.256			0.82935	0.92214	16.81	6	1	Median	0.87657	0.72514	NaN	1	0	Median	0.77395	0.92286	3.1239	2	0	Median	0.82727	0.81417	20.623	2	0	Median	1.0329	1.0855	NaN	1	1	Median	2019400000	1086000000	933480000	559840000	289950000	269890000	562930000	310210000	252720000	448290000	252370000	195920000	448370000	233420000	214950000	630	1283	597	3578;3579;3580;3581;3582;3583	4693;4694;4695;4696;4697	4697			5	
AASHEQAAAALK	1	Unmodified	1166.6044	0.60438529	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		9.1947	8.9963	2	3.1384E-05	6600	160511_QHF_FH_JSI11i_2	106.62	74.684			1.1596	1.1506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1596	1.1506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26116000	11543000	14573000	0	0	0	0	0	0	26116000	11543000	14573000	0	0	0	631	2330	598	3584;3585	4698;4699	4698			2	
AASHLLSIHK	1	Unmodified	1075.6138	0.61382777	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	1	2	1	20.546	19.807	2;3	0.00039558	15961	160511_QHF_FH_JSI9i_3	64.439	54.208			1.1422	1.1228	105.6	5	0	Median	1.8513	1.5015	189.54	2	0	Median	0.40058	0.48476	NaN	1	0	Median	1.2085	1.1228	NaN	1	0	Median	1.1422	1.1791	NaN	1	0	Median	407710000	202180000	205520000	134150000	48551000	85596000	84962000	57916000	27046000	89485000	39734000	49750000	99112000	55982000	43131000	632	3736	599	3586;3587;3588;3589;3590;3591;3592	4700;4701;4702;4703;4704;4705	4702			6	
AASIFGGAK	1	Unmodified	820.4443	0.44430282	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.61	3	2	4				2	3	4	4	5	4	5	31.536	26.794	2	4.5526E-05	22729	160511_QHF_FH_JSI11i_3	98.523	71.561			0.833	0.8243	30.55	17	1	Median	1.0394	0.86926	14.103	4	0	Median	0.6165	0.7237	25.63	4	0	Median	0.93414	0.93232	62.375	4	1	Median	0.833	0.89862	10.121	5	0	Median	3638000000	1913800000	1724100000	650090000	303680000	346400000	509760000	312060000	197700000	1399000000	789360000	609660000	1079100000	508730000	570380000	633	1237	600	3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610	4706;4707;4708;4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720	4707			14	
AASIFGGAKPVDTAAR	1	Unmodified	1530.8154	0.8154407	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	40.295	39.373	2;3	2.1198E-10	32941	160511_QHF_FH_JSI10i_3	117.2	91.874			1.0819	0.95511	11.477	9	0	Median	1.1352	0.89982	9.8205	3	0	Plateau	0.78036	0.91338	9.0914	3	0	Median	1.1624	1.1076	9.9169	2	0	Median	0.99326	0.93286	NaN	1	0	Median	1216600000	584350000	632220000	588820000	251820000	337000000	382390000	207860000	174530000	213870000	108850000	105020000	31485000	15814000	15671000	634	1237	601	3611;3612;3613;3614;3615;3616;3617;3618;3619	4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739	4728			19	
AASIFGGAKPVDTAAR	1	Acetyl (K)	1572.826	0.82600539	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		68.153	57.13	2	0.00015012	31627	160513_QHF_FH_JSI11Kac_4	96.64	90.257			0.39201	0.39041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39201	0.39041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8267800	5947900	2319900	0	0	0	0	0	0	8267800	5947900	2319900	0	0	0	635	1237	601	3620	4740;4741	4741	1133		2	
AASITSEVFNK	1	Unmodified	1165.5979	0.59790293	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		4	3	4	4	51.873	47.028	2	1.1411E-47	40296	160511_QHF_FH_JSI12i_2	214.93	176.64			0.96265	1.0052	63.288	15	3	Median	1.0057	0.84569	115.36	4	2	Median	0.83174	0.98958	11.563	3	0	Plateau	0.98883	0.98533	18.976	4	0	Median	1.1526	1.2628	27.535	4	1	Median	1990100000	1103800000	886310000	647320000	428240000	219080000	408280000	236590000	171690000	571210000	282930000	288280000	363290000	156030000	207250000	636	5658	602	3621;3622;3623;3624;3625;3626;3627;3628;3629;3630;3631;3632;3633;3634;3635	4742;4743;4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761	4744			20	
AASIYSSWAEEQR	0	Unmodified	1496.6896	0.68957148	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	49.063	48.392	2	4.4962E-05	42639	160511_QHF_FH_JSI10i_2	113.63	96.997			0.88663	0.91226	20.498	7	4	Median	1.6076	1.3244	NaN	1	0	Median	0.76205	0.91226	NaN	1	0	Median	1.1158	1.0859	8.8124	2	1	Median	0.82099	0.77718	9.4105	3	3	Median	209370000	108450000	100920000	34937000	13390000	21547000	31406000	19094000	12312000	57403000	26424000	30979000	85623000	49538000	36084000	637	3838	603	3636;3637;3638;3639;3640;3641;3642;3643	4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773	4769			12	
AASKPVEAAVVAAAVPSSGSGVGGGGTAGPGTGGLPR	1	Acetyl (Protein N-term)	3158.632	0.63200361	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				81.144	80.289	4	8.3316E-07	71466	160511_QHF_FH_JSI9i_1	49.767	43.539			0.37814	0.30053	NaN	1	1	Median	0.37814	0.30053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25517000	22963000	2553900	25517000	22963000	2553900	0	0	0	0	0	0	0	0	0	638	611	604	3644	4774	4774			1	
AASLELSEVKK	2	Unmodified	1173.6605	0.66050319	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.777	30.777	3	0.040977	26685	160511_QHF_FH_JSI11i_3	28.361	20.794			3.8528	3.5978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8528	3.5978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45195000	10769000	34426000	0	0	0	0	0	0	45195000	10769000	34426000	0	0	0	639	2269	605	3645	4775	4775			1	
AASLEYDYETIR	0	Unmodified	1429.6725	0.67252444	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.48	5	6					1			3	4	2	3	54.529	51.531	2	3.489E-14	44624	160511_QHF_FH_JSI11i_2	132.32	119.74			0.92712	0.98377	18.946	5	3	Median	1.0366	0.87573	33.26	2	2	Median	0.92712	1.0799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88849	0.94259	6.0472	2	1	Median	577100000	304320000	272780000	312020000	168440000	143580000	2753100	1241000	1512000	0	0	0	262330000	134640000	127680000	640	4180	606	3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657	4776;4777;4778;4779;4780;4781;4782;4783;4784;4785;4786;4787;4788;4789	4788			14	
AASLHWTSER	0	Unmodified	1156.5625	0.56252048	169	O14521	SDHD	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			2						2	3	1			28.674	22.598	2;3	8.369E-05	18033	160511_QHF_FH_JSI9i_3	101.65	78.218			0.9071	1.1668	19.692	3	1	Plateau	1.153	0.95955	27.656	2	1	Median	0.79871	0.92184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76355000	34638000	41717000	61769000	26279000	35490000	14585000	8359200	6226300	0	0	0	0	0	0	641	169	607	3658;3659;3660;3661	4790;4791;4792	4790			3	
AASLKSNYNLPMHK	2	Acetyl (K)	1614.8188	0.81881152	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		56.957	47.231	2;3	2.56E-05	25594	160513_QHF_FH_JSI11Kac_6	138.55	126.57			0.49785	0.47462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49785	0.47462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53296000	40455000	12841000	0	0	0	0	0	0	53296000	40455000	12841000	0	0	0	642	1457	608	3662;3663	4793;4794	4794	1435;1436		2	
AASLLLEILGLLCK	1	Unmodified	1512.8949	0.89493657	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	2	3	2	3	102.51	95.712	2;3	5.7575E-114	53838	160513_QHF_FH_JSI9Kac_6	317.77	283.05			0.78632	0.89827	43.213	8	1	Median	1.7586	1.5076	4.9157	2	0	Median	0.77629	0.91847	34.099	3	0	Median	0.79648	0.76696	NaN	1	1	Median	0.53187	0.56668	8.9212	2	0	Median	1759700000	1030900000	728830000	267650000	114600000	153050000	1380600000	842720000	537840000	8134900	5030700	3104200	103410000	68569000	34837000	643	2217	609	3664;3665;3666;3667;3668;3669;3670;3671;3672;3673	4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807	4798			12	
AASLTEDRDR	0	Unmodified	1132.5473	0.54726434	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	7.7596	7.4985	2;3	3.8716E-55	5197	160511_QHF_FH_JSI11i_3	234.81	169.55			0.88404	0.95219	13.234	10	0	Median	1.1777	1.0097	4.9365	2	0	Median	0.79108	0.96876	8.3445	2	0	Median	1.0374	0.97502	18.051	3	0	Plateau	0.92269	0.9299	11.265	3	0	Median	1595200000	850360000	744880000	479420000	219880000	259540000	589150000	341160000	247990000	233180000	122910000	110270000	293490000	166420000	127080000	644	2217	610	3674;3675;3676;3677;3678;3679;3680;3681;3682;3683	4808;4809;4810;4811;4812;4813;4814;4815;4816;4817;4818;4819;4820	4809			13	
AASNMALGK	1	Unmodified	861.43784	0.43783723	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	14.637	14.302	2	1.4006E-05	12131	160511_QHF_FH_JSI12i_1	109.71	83.605			0.76792	0.84779	26.455	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88273	1.0222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66805	0.70315	NaN	1	0	Median	539100000	315890000	223210000	0	0	0	311130000	159110000	152020000	0	0	0	227970000	156780000	71189000	645	1793	611	3684;3685;3686	4821;4822;4823	4822			3	
AASNMALGKFR	1	Acetyl (K)	1206.6179	0.61792687	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.76	48.037	2	5.5575E-05	25923	160513_QHF_FH_JSI11Kac_6	102.06	73.335			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5020300	5020300	0	0	0	0	0	0	0	5020300	5020300	0	0	0	0	646	1793	612	3687	4824	4824	1808		1	
AASPGSGSANPRK	1	Acetyl (Protein N-term)	1240.616	0.61601261	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	1	0	1		By matching		By MS/MS	1	0	2										1		1	8.507	8.2089	2	0.00010769	6159	160511_QHF_FH_JSI12i_1	64.82	45.033			0.7998	0.87836	25.237	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63145	0.7348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.013	1.05	NaN	1	0	Median	76424000	44513000	31912000	0	0	0	41247000	25082000	16165000	0	0	0	35177000	19431000	15746000	647	3144	613	3688;3689	4825;4826	4825			2	
AASPLGSPELCPSALHGLSQAMK	1	Unmodified	2321.1508	0.1507867	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.758	77.625	3	6.9914E-07	67346	160511_QHF_FH_JSI12i_3	64.87	56.162			0.71039	0.69343	55.13	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51029	0.46957	NaN	1	0	Median	0.98896	1.024	NaN	1	1	Median	46177000	26785000	19392000	0	0	0	0	0	0	21090000	13130000	7960400	25087000	13655000	11432000	648	2993	614	3690;3691	4827;4828	4828			2	
AASPQDLAGGYTSSLACHR	0	Unmodified	1960.9061	0.90612297	1760	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		50.54	50.54	3	0.00067122	44732	160511_QHF_FH_JSI11i_3	46.099	37.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18261000	0	18261000	0	0	0	0	0	0	18261000	0	18261000	0	0	0	649	1760	615	3692	4829	4829			1	
AASQAVEEMR	0	Acetyl (Protein N-term)	1132.5183	0.5182724	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.595	41.14	2	2.7226E-19	37289	160511_QHF_FH_JSI12i_1	207.29	177.91			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	650	260	616	3693;3694;3695	4830;4831;4832	4831			3	
AASQAVEEMR	0	Acetyl (Protein N-term);Oxidation (M)	1148.5132	0.51318702	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	1	1	0	By MS/MS			By MS/MS	8	4.97	1			1	1					1			2	32.085	26.734	2	0.00027689	36391	160511_QHF_FH_JSI9i_1	82.287	54.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	651	260	616	3696;3697;3698	4833;4834;4835	4833		108	3	
AASQILILK	1	Unmodified	955.60662	0.60661712	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.6	6.22		4					2	4		2	3	3	2	60.318	53.454	2	0.0039177	29105	160513_QHF_FH_JSI11Kac_5	71.692	41.525			1.1307	1.0665	19.992	10	0	Median	1.3248	1.1385	6.7205	2	0	Median	0.73585	0.89645	12.413	3	0	Median	1.0323	1.0284	20.312	3	0	Plateau	0.99063	1.1042	29.985	2	0	Median	172900000	81512000	91390000	31481000	12148000	19333000	51509000	26424000	25085000	58732000	27200000	31532000	31180000	15740000	15440000	652	292	617	3699;3700;3701;3702;3703;3704;3705;3706;3707;3708	4836;4837;4838;4839;4840;4841;4842	4840			7	
AASQPTSLAPEK	1	Unmodified	1198.6194	0.61936665	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	2	2	3	24.515	20.848	2	2.2733E-31	17845	160511_QHF_FH_JSI11i_1	189.58	138.88			0.93501	0.93722	14.14	7	2	Median	1.1202	0.93722	NaN	1	0	Median	0.82478	0.99056	20.146	2	0	Median	1.0691	1.0267	NaN	1	0	Median	1.0226	1.0977	17.613	3	2	Plateau	1325900000	664090000	661770000	342650000	179550000	163100000	287020000	154380000	132640000	308270000	145250000	163020000	387920000	184910000	203010000	653	4180	618	3709;3710;3711;3712;3713;3714;3715;3716	4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854;4855	4844			13	
AASQSTQVPTITEGVAAALLLLK	1	Unmodified	2281.2893	0.28931231	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.92		4	7						4	1	2	7	5	101.84	99.55	2;3;4	5.3621E-26	89684	160511_QHF_FH_JSI12i_3	178.22	162.83			0.81834	0.81858	40.765	15	9	Median	0.72829	0.62905	NaN	1	0	Median	0.67367	0.81668	16.889	2	2	Median	0.82424	0.8109	48.315	7	4	Median	0.82039	0.88613	27.126	5	3	Median	2619500000	1442800000	1176700000	183800000	97347000	86457000	326560000	205220000	121350000	1262100000	684310000	577800000	847020000	455910000	391110000	654	3860	619	3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731	4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866;4867;4868;4869;4870	4867			15	
AASQSTTDYNQVVPNR	0	Unmodified	1749.8282	0.82819023	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.872	30.3	2	4.718E-23	27240	160511_QHF_FH_JSI12i_1	143.86	131.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	655	2948	620	3732	4871	4871			1	
AASSAAQGAFQGN	0	Unmodified	1178.5316	0.53161428	253	O15127	SCAMP2	Secretory carrier-associated membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	4.84	5			3						1	2	2	3	21.64	19.124	2	2.3964E-07	16406	160511_QHF_FH_JSI9i_1	138.08	130.51			0.79001	0.95326	14.831	7	2	Median	1.1914	0.97941	NaN	1	0	Median	0.77962	0.91382	5.9761	2	0	Median	1.1457	1.0916	15.016	2	0	Median	0.76888	0.79285	1.956	2	2	Median	346450000	170110000	176340000	75266000	33776000	41490000	67973000	34840000	33133000	73660000	35334000	38326000	129550000	66162000	63388000	656	253	621	3733;3734;3735;3736;3737;3738;3739;3740	4872;4873;4874;4875;4876;4877;4878;4879;4880;4881	4877			10	
AASSELPADISK	1	Unmodified	1187.6034	0.60338224	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	38.417	34.519	2	0.00013065	30580	160511_QHF_FH_JSI10i_1	104.43	90.664			0.67336	0.7968	21.759	5	0	Median	NaN	NaN	NaN	0	0	Median	0.6684	0.79399	0.49928	2	0	Median	1.0186	0.98506	10.271	2	0	Median	0.57156	0.58888	NaN	1	0	Median	325180000	187480000	137700000	0	0	0	133480000	85056000	48427000	120930000	67234000	53694000	70770000	35186000	35584000	657	4581	622	3741;3742;3743;3744;3745	4882;4883;4884;4885;4886	4885			5	
AASSKPEEIK	2	Acetyl (K)	1100.5714	0.57135383	428	O60563	CCNT1	Cyclin-T1	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	25.883	18.7	2	0.0067099	9320	160513_QHF_FH_JSI12Kac_2	63.216	45.23			1.0918	1.1712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0918	1.1712	NaN	1	0	Median	2938600	1476700	1461900	0	0	0	0	0	0	0	0	0	2938600	1476700	1461900	658	428	623	3746	4887;4888	4888	214		2	
AASSLLANLWQYNK	1	Unmodified	1577.8202	0.82019173	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							1	3	2		89.916	89.188	2;3	3.5833E-17	79527	160511_QHF_FH_JSI11i_3	209.97	187.05			1.0333	1.1038	11.601	6	4	Median	1.5366	1.2617	NaN	1	1	Median	0.93256	1.0447	9.5946	3	2	Median	1.1524	1.0663	15.257	2	1	Median	NaN	NaN	NaN	0	0	Median	168500000	84976000	83524000	22371000	9631500	12740000	71955000	38186000	33769000	74173000	37158000	37015000	0	0	0	659	5608	624	3747;3748;3749;3750;3751;3752	4889;4890;4891;4892;4893;4894;4895;4896;4897	4891			9	
AASSLNLSNGETESVK	1	Unmodified	1605.7846	0.78459408	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	36.238	35.645	2	2.8223E-05	32207	160511_QHF_FH_JSI12i_1	112.44	88.833			0.8458	0.86517	23.962	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8458	0.86517	23.962	2	2	Median	52629000	29022000	23607000	0	0	0	0	0	0	0	0	0	52629000	29022000	23607000	660	733	625	3753;3754	4898;4899	4898			2	
AASSSSPGSPVASSPSR	0	Unmodified	1530.7274	0.72741355	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.944	14.22	2	1.1129E-07	11470	160511_QHF_FH_JSI9i_1	127.71	81.009			0.45147	0.42622	36.069	2	2	Median	0.64833	0.55004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31438	0.33027	NaN	1	1	Median	61454000	34624000	26830000	31212000	14994000	16218000	0	0	0	0	0	0	30242000	19629000	10613000	661	3838	626	3755;3756	4900;4901	4901			2	
AASSSSSSAGGVSGSSVTGSGFSVSDLAPPRK	1	Acetyl (Protein N-term)	2925.3952	0.39518696	4025	Q96DE5	ANAPC16	Anaphase-promoting complex subunit 16	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	2										1	1		70.474	70.165	3	7.726E-11	63842	160511_QHF_FH_JSI11i_1	71.295	67.768			0.73936	0.84415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73936	0.84415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47364000	14579000	32785000	0	0	0	26453000	14579000	11874000	20911000	0	20911000	0	0	0	662	4025	627	3757;3758	4902;4903;4904	4902			3	
AASTASHRPIK	1	Acetyl (Protein N-term)	1179.636	0.63601977	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.1		7	9					1	1	6	4	5	3	10.21	8.86	2;3	5.3419E-38	7264	160511_QHF_FH_JSI10i_2	93.649	47.223			0.98792	0.94181	49.746	16	3	Median	1.3121	1.0977	17.43	6	0	Median	0.88866	1.0591	27.117	4	0	Median	0.69434	0.65128	67.701	4	1	Median	0.40246	0.40475	40.4	2	2	Median	3302000000	1703300000	1598700000	1325600000	578220000	747330000	1369000000	733620000	635400000	482640000	303810000	178840000	124780000	87660000	37124000	663	1516	628	3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776	4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931	4925			27	
AASVEQR	0	Acetyl (Protein N-term)	801.39808	0.39808091	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	8	4.97	2			2	2						2	3	1	14.972	10.484	2	0.0034339	10170	160511_QHF_FH_JSI10i_1	75.189	22.553			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	664	4126	629	3777;3778;3779;3780;3781;3782	4932;4933;4934;4935;4936;4937	4934			6	
AASVFVLYATSCANNFAMK	1	Unmodified	2063.9809	0.98086782	4952	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	1	3	2	89.931	82.515	2;3	1.897E-138	44398	160513_QHF_FH_JSI11Kac_6	343.87	322.64			1.1012	1.0822	33.891	7	2	Median	2.5197	2.1467	NaN	1	0	Median	0.90499	1.0822	NaN	1	0	Median	1.0069	0.95218	12.539	3	1	Plateau	1.3215	1.3906	18.578	2	1	Median	1123500000	533690000	589850000	92066000	34354000	57712000	139500000	75752000	63744000	604300000	290950000	313350000	287670000	132630000	155040000	665	4952	630	3783;3784;3785;3786;3787;3788;3789	4938;4939;4940;4941;4942;4943;4944;4945;4946;4947	4942			10	
AASVFVLYATSCANNFAMK	1	Oxidation (M)	2079.9758	0.97578244	4952	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	85.853	76.728	3	2.4023E-18	40987	160513_QHF_FH_JSI12Kac_6	135.55	125.8			1.174	1.2322	29.804	3	0	Median	1.8897	1.625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94961	0.89578	NaN	1	0	Median	1.174	1.2322	NaN	1	0	Median	443080000	215200000	227870000	73547000	24435000	49112000	0	0	0	158940000	83533000	75406000	210590000	107240000	103360000	666	4952	630	3790;3791;3792	4948;4949;4950;4951;4952;4953	4953		2561	6	
AASVHTVGEDTEETPHR	0	Unmodified	1834.8446	0.84456858	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		14.84	14.616	3	3.1952E-06	11898	160511_QHF_FH_JSI11i_3	103.01	91.965			1.1927	1.0573	17.588	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73466	0.86628	NaN	1	1	Median	1.1623	1.0573	18.811	2	2	Median	NaN	NaN	NaN	0	0	Median	122660000	60191000	62469000	0	0	0	17662000	9659000	8003200	105000000	50532000	54466000	0	0	0	667	4288	631	3793;3794;3795;3796	4954;4955;4956;4957	4955			4	
AASVLLYSLWAHTELHHAYK	1	Unmodified	2309.1957	0.1956867	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			79.993	74.352	4;5	1.5776E-13	40704	160513_QHF_FH_JSI10Kac_6	122.44	113.65			0.64921	0.76319	10.132	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64921	0.76319	10.132	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	341800000	219190000	122610000	0	0	0	341800000	219190000	122610000	0	0	0	0	0	0	668	4330	632	3797;3798	4958;4959;4960	4959			3	
AASVPVK	1	Unmodified	670.40138	0.40137537	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	15.212	13.093	2	0.014953	8677	160511_QHF_FH_JSI11i_1	64.803	25.585			0.49109	0.53985	84.389	5	4	Median	0.8343	0.67855	NaN	1	0	Median	0.45457	0.53985	NaN	1	1	Median	0.22079	0.21641	113.33	2	2	Median	0.73249	0.78548	NaN	1	1	Median	1524300000	952390000	571890000	291080000	157010000	134070000	451230000	288760000	162470000	406380000	271420000	134950000	375590000	235200000	140390000	669	2409	633	3799;3800;3801;3802;3803	4961;4962;4963;4964;4965	4961			5	
AASVVQPQPLVVVK	1	Unmodified	1433.8606	0.86059998	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	60.752	59.873	2	0.00044748	54572	160511_QHF_FH_JSI12i_1	96.171	82.509			0.94095	0.86694	22.809	2	2	Median	1.2266	1.0187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7218	0.73781	NaN	1	1	Median	115200000	60647000	54556000	45568000	20859000	24709000	0	0	0	0	0	0	69635000	39788000	29847000	670	457	634	3804;3805;3806	4966;4967;4968	4966			3	
AASVVQPQPLVVVKEEK	2	Acetyl (K)	1862.0513	0.051313874	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	77.145	68.782	3	0.017163	34223	160513_QHF_FH_JSI12Kac_3	47.09	39.682			8.1162	8.7738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.1162	8.7738	NaN	1	1	Median	1766200	83480	1682700	0	0	0	0	0	0	0	0	0	1766200	83480	1682700	671	457	635	3807	4969	4969	234		1	
AASYTEEDENHTAK	1	Unmodified	1564.6641	0.66414459	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	9.0001	8.6028	2;3	6.1191E-40	6568	160511_QHF_FH_JSI12i_1	201.46	191.08			0.99135	1.159	23.071	7	1	Median	1.6429	1.3635	6.1177	2	0	Median	0.85405	0.99745	21.228	2	1	Median	1.1995	1.1719	NaN	1	0	Median	0.77971	0.82882	7.2544	2	0	Median	963430000	491990000	471440000	238090000	113680000	124420000	287140000	162630000	124510000	171410000	77166000	94246000	266780000	138520000	128260000	672	2493	636	3808;3809;3810;3811;3812;3813;3814	4970;4971;4972;4973;4974;4975	4972			6	
AATAAADFTAK	1	Unmodified	1036.5189	0.51892433	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.04	4	2				4	4			2	4	5	3	27.995	21.118	2	2.8258E-09	20375	160511_QHF_FH_JSI12i_1	127.76	99.591			1.1069	1.1042	14.539	12	4	Median	1.3007	1.0654	6.1874	2	0	Median	0.9581	1.1319	3.2767	3	1	Plateau	1.2473	1.2161	20.844	4	2	Median	0.92883	0.98388	12.168	3	1	Plateau	3155600000	1552200000	1603400000	840370000	411950000	428420000	813480000	439480000	374000000	706940000	333310000	373630000	794860000	367490000	427370000	673	5595	637	3815;3816;3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828	4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993	4978			18	
AATAAEAVASGSGEPREEAGALGPAWDESQLR	0	Acetyl (Protein N-term)	3195.5069	0.50686268	5071	Q9NWT6	HIF1AN	Hypoxia-inducible factor 1-alpha inhibitor	yes	yes	0	1	0	1	By MS/MS			By MS/MS	1	0	2									1			1	84.543	83.876	3	6.9757E-16	74613	160511_QHF_FH_JSI9i_1	79.9	76.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	674	5071	638	3829;3830	4994;4995	4995			2	
AATAGPPNAR	0	Unmodified	924.47773	0.47772821	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	9.7014	1.3186	2	0.0030559	3642	160513_QHF_FH_JSI12Kac_4	70.919	45.182			1.0762	1.2211	12.325	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92412	1.0893	NaN	1	0	Median	1.2534	1.2284	NaN	1	0	Median	0.89641	0.96002	NaN	1	0	Median	11982000	6148500	5833800	0	0	0	3958400	2036100	1922300	5478800	2730400	2748500	2545000	1382000	1163000	675	5466	639	3831;3832;3833	4996;4997;4998;4999;5000;5001	5000			6	
AATALKDVVK	2	Acetyl (K)	1056.6179	0.61791009	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	54.997	45.844	2	0.007085	24500	160513_QHF_FH_JSI12Kac_3	72.643	48.875			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	875720	875720	0	0	0	0	0	0	0	0	0	0	875720	875720	0	676	2628	640	3834	5002	5002	2593		1	
AATALLEAGLAR	0	Acetyl (Protein N-term)	1197.6717	0.67173657	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.884	95.585	2	3.791E-06	86771	160511_QHF_FH_JSI10i_1	117.7	80.354			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	677	3764	641	3835;3836;3837;3838	5003;5004;5005;5006;5007;5008;5009	5008			7	
AATAPLLEAVDNLSAFASNPEFSSIPAQISPEGR	0	Unmodified	3469.7365	0.73652826	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.2	0.4		4	1							2		1	2	102.71	102.63	3;4	5.1076E-21	90494	160511_QHF_FH_JSI9i_2	92.343	90.313			1.2198	1.1411	6.0163	4	1	Median	1.3633	1.1688	9.1187	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1677	1.1775	NaN	1	0	Median	1.0892	1.1059	NaN	1	0	Median	534600000	226420000	308180000	126020000	43072000	82952000	0	0	0	115110000	52603000	62504000	293470000	130740000	162730000	678	5616	642	3839;3840;3841;3842;3843	5010;5011;5012;5013	5010			4	
AATASAGAGGIDGK	1	Acetyl (Protein N-term)	1187.5782	0.57823012	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	28.989	28.427	2	0.00012433	25435	160511_QHF_FH_JSI12i_1	37.426	23.219			1.5111	1.6225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5111	1.6225	NaN	1	0	Median	43782000	28677000	15105000	0	0	0	0	0	0	0	0	0	43782000	28677000	15105000	679	2198	643	3844	5014	5014			1	
AATASAGAGGIDGKPR	1	Acetyl (Protein N-term)	1440.7321	0.732105	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	28.639	24.639	2	6.2343E-99	21735	160511_QHF_FH_JSI11i_1	129.34	100.65			0.9224	0.93792	8.5217	7	0	Median	1.2229	1.0077	NaN	1	0	Median	0.86424	1.0245	15.344	2	0	Median	0.94324	0.92324	2.2318	2	0	Median	0.87998	0.93164	6.4052	2	0	Median	2587800000	1277200000	1310700000	575930000	259200000	316730000	702470000	328900000	373570000	679980000	346540000	333440000	629460000	342530000	286930000	680	2198	644	3845;3846;3847;3848;3849;3850;3851;3852;3853	5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028	5016			14	
AATDGADTPFGR	0	Unmodified	1177.5364	0.53636531	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	27.649	26.737	2	0.00017994	23257	160511_QHF_FH_JSI9i_1	97.813	88.226			1.295	1.1808	6.3842	2	1	Median	1.5103	1.2354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1104	1.1287	NaN	1	0	Median	156770000	73861000	82909000	74256000	35534000	38722000	0	0	0	0	0	0	82515000	38327000	44187000	681	3760	645	3854;3855	5029;5030	5030			2	
AATDLER	0	Acetyl (Protein N-term)	816.39775	0.39774656	3853	Q92599	SEPT8	Septin-8	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				24.503	23.276	2	0.0084278	19964	160511_QHF_FH_JSI9i_1	46.994	19.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	682	3853	646	3856	5031	5031			1	
AATEDERLAGSGEGER	0	Acetyl (Protein N-term)	1688.7602	0.76017024	1802	P53609	PGGT1B	Geranylgeranyl transferase type-1 subunit beta	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	25.803	25.264	2	0.011794	22502	160511_QHF_FH_JSI12i_1	45.257	19.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	683	1802	647	3857	5032	5032			1	
AATFFGEVVK	1	Acetyl (Protein N-term)	1109.5757	0.57571092	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	94.504	92.911	1;2	6.7637E-09	86106	160511_QHF_FH_JSI10i_1	66.692	55.982			0.96354	0.92942	10.445	5	0	Median	1.1144	0.92942	NaN	1	0	Median	0.68865	0.80525	NaN	1	0	Median	0.93152	0.92239	NaN	1	0	Median	0.97178	1.0324	4.0583	2	0	Median	737860000	389720000	348140000	148790000	69561000	79231000	220940000	131880000	89063000	199370000	104960000	94413000	168760000	83328000	85432000	684	696	649	3858;3859;3860;3861;3862;3863	5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045	5040			13	
AATFGLILDDVSLTHLTFGK	1	Unmodified	2118.1361	0.13610614	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.7		4	2						9	3	3	5	4	98.204	93.065	2;3	0	49199	160513_QHF_FH_JSI9Kac_6	397.58	360.81			1.0154	1.0233	13.912	15	3	Median	1.0615	0.88782	10.088	3	0	Median	0.73894	0.86839	12.293	3	0	Median	1.1983	1.1222	7.0565	5	2	Median	0.95691	1.0375	12.791	4	1	Median	10477000000	5243700000	5233400000	1706100000	812340000	893760000	1685000000	948450000	736540000	4326200000	2135500000	2190700000	2759800000	1347400000	1412400000	685	1424	650	3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878	5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070	5061			25	
AATFPLQVLGFEIDAVNSVQFSNHTGYAHWK	1	Unmodified	3446.7048	0.70477462	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.478	89.757	4	5.6082E-20	51805	160513_QHF_FH_JSI10Kac_6	143.64	132.39			0.89804	1.0259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89804	1.0259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84104000	50361000	33742000	0	0	0	84104000	50361000	33742000	0	0	0	0	0	0	686	165	651	3879	5071	5071			1	
AATGEEVPR	0	Unmodified	928.46141	0.46140945	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.913	10.444	2	0.00014605	8341	160511_QHF_FH_JSI12i_1	89.698	60.36			0.9337	0.88809	5.0347	3	0	Plateau	1.0706	0.88593	NaN	1	0	Median	0.77433	0.91999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9337	0.97882	NaN	1	0	Median	507880000	277890000	229980000	195810000	103880000	91932000	174690000	96119000	78575000	0	0	0	137370000	77892000	59476000	687	274	652	3880;3881;3882;3883	5072;5073;5074;5075	5074			3	
AATGYRDPATGDTIPLFQAMQK	1	Unmodified	2351.158	0.15798057	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		77.684	77.684	3	0.0045168	69357	160511_QHF_FH_JSI11i_3	39.288	30.974			0.15504	0.14772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15504	0.14772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17950000	15224000	2725600	0	0	0	0	0	0	17950000	15224000	2725600	0	0	0	688	1898	653	3884	5076;5077	5076			2	
AATIPVSQISTIAGSK	1	Unmodified	1542.8617	0.86172219	2855	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		66.48	66.043	2	0.0091687	60059	160511_QHF_FH_JSI11i_1	56.174	41.03			0.89227	0.8568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89227	0.8568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40351000	19464000	20887000	0	0	0	0	0	0	40351000	19464000	20887000	0	0	0	689	2855	654	3885	5078	5078			1	
AATIVATSEGSLWGLDR	0	Unmodified	1745.8948	0.89481323	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	79.151	78.338	2	9.5418E-12	69117	160511_QHF_FH_JSI9i_2	114.82	89.38			0.98292	1.029	8.9982	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0008	1.0188	12.7	2	2	Median	0.98292	1.029	NaN	1	0	Median	56686000	30803000	25883000	0	0	0	0	0	0	40117000	22486000	17631000	16569000	8317300	8252000	690	1043	655	3886;3887;3888;3889;3890	5079;5080;5081;5082;5083;5084	5081			6	
AATLAER	0	Unmodified	730.39735	0.39735263	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	4.48	5	3	4				1	1		5	4	3	2	8.5711	6.9743	2	0.0034852	5577	160511_QHF_FH_JSI11i_1	104.21	28.898			1.1207	1.0453	16.339	13	0	Median	1.2388	1.0395	12.274	4	0	Median	0.76856	0.9198	20.012	4	0	Median	1.2833	1.2483	5.8842	3	0	Plateau	1.0947	1.1193	21.076	2	0	Median	7033000000	3349600000	3683400000	1484900000	640540000	844350000	2791400000	1432700000	1358700000	1565300000	736070000	829200000	1191500000	540340000	651110000	691	1706	656	3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904	5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100;5101;5102	5087			18	
AATLAQELEK	1	Unmodified	1072.5764	0.57643921	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.963	29.396	2	0.010696	26438	160511_QHF_FH_JSI12i_1	57.177	15.068			0.19899	0.21161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19899	0.21161	NaN	1	1	Median	1200100000	1049600000	150530000	0	0	0	0	0	0	0	0	0	1200100000	1049600000	150530000	692	2560	657	3905	5103	5103			1	
AATLEGWK	1	Unmodified	874.45487	0.45486751	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		35.362	34.541	2	0.0034465	29208	160511_QHF_FH_JSI11i_2	72.485	52.203			1.3828	1.2653	67.662	2	0	Median	0.94104	0.78415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.032	2.0416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148080000	58304000	89776000	79374000	45532000	33843000	0	0	0	68706000	12772000	55934000	0	0	0	693	1895	658	3906;3907	5104	5104			1	
AATLILEPAGR	0	Unmodified	1110.6397	0.63970816	3313	Q86TX2	ACOT1	Acyl-coenzyme A thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		49.283	48.439	2	0.00075472	41723	160511_QHF_FH_JSI11i_2	103.19	80.48			0.77066	0.76292	15.128	3	3	Plateau	0.7035	0.59453	NaN	1	1	Median	0.64223	0.78119	NaN	1	1	Median	0.77066	0.76292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	225020000	146920000	78105000	71804000	48251000	23553000	51941000	31068000	20873000	101280000	67600000	33679000	0	0	0	694	3313	659	3908;3909;3910	5105;5106;5107	5106			3	
AATLLAAR	0	Acetyl (Protein N-term)	827.4865	0.48650199	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.487	58.842	2	0.0033211	53438	160511_QHF_FH_JSI12i_1	62.717	33.379			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	695	1302	660	3911;3912;3913;3914	5108;5109;5110;5111	5109			4	
AATLMMLGR	0	Unmodified	962.50414	0.50414266	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.38			4					1	3	3	2	2	1	58.528	53.388	2	8.7427E-06	28946	160513_QHF_FH_JSI11Kac_6	125.58	98.622			1.0929	1.0171	14.777	8	1	Median	1.4119	1.1554	16.009	3	0	Median	0.77423	0.88122	4.985	2	0	Median	1.0345	0.98688	13.696	2	1	Median	1.0744	1.0847	NaN	1	0	Median	535800000	293620000	242170000	139800000	64596000	75202000	159610000	100090000	59517000	141040000	76273000	64763000	95355000	52662000	42693000	696	4294	661	3915;3916;3917;3918;3919;3920;3921;3922	5112;5113;5114;5115;5116;5117;5118;5119;5120;5121	5115			9	
AATMEIPIHGNGEAR	0	Unmodified	1565.762	0.76202492	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.463	38.098	3	0.012473	32569	160511_QHF_FH_JSI12i_2	37.177	32.708			1.0248	1.1515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0248	1.1515	NaN	1	0	Median	36364000	17518000	18846000	0	0	0	0	0	0	0	0	0	36364000	17518000	18846000	697	1795	662	3923	5122	5122			1	
AATMSAVEAATCR	0	Unmodified	1337.6068	0.60676983	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		34.663	34.253	2	1.3679E-16	29128	160511_QHF_FH_JSI11i_2	131.83	113.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	698	2859	663	3924;3925	5123;5124	5123			2	
AATPQVAAELEK	1	Unmodified	1226.6507	0.65066678	742	O95900	TRUB2	Probable tRNA pseudouridine synthase 2	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		41.138	40.765	2	0.0021428	36573	160511_QHF_FH_JSI10i_1	57.225	35.48			0.7767	0.81252	3.8835	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69292	0.79051	NaN	1	0	Median	0.87061	0.83514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75811000	38780000	37031000	0	0	0	35491000	18912000	16579000	40320000	19869000	20452000	0	0	0	699	742	664	3926;3927	5125	5125			1	
AATQCEFSK	1	Unmodified	1040.4597	0.45969489	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.12	11.99	2	0.0025521	9586	160511_QHF_FH_JSI11i_1	64.191	41.12			1.1937	1.1673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1937	1.1673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56248000	23687000	32561000	0	0	0	0	0	0	56248000	23687000	32561000	0	0	0	700	4091	665	3928	5126	5126			1	
AATSDLEHYDK	1	Unmodified	1248.5622	0.5622457	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	3.68	7	3					1			3	3	2	3	20.389	19.097	2;3	2.0615E-05	16196	160511_QHF_FH_JSI9i_1	89.301	73.913			0.95103	0.94459	21.801	11	1	Median	1.3281	1.1068	14.765	3	1	Median	0.68666	0.84509	14.606	3	0	Median	0.92088	0.90107	40.531	2	0	Median	0.95103	0.98336	27.411	3	0	Median	654760000	332660000	322100000	143270000	51852000	91418000	222040000	127770000	94270000	124080000	65036000	59047000	165370000	88006000	77367000	701	2100	666	3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939	5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139	5133			13	
AATSGILSALGNFLAQMIEK	1	Unmodified	2034.082	0.081962075	4948	Q9NR77	PXMP2	Peroxisomal membrane protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.94	97.216	3	1.0878E-26	57511	160513_QHF_FH_JSI10Kac_6	159.95	145.38			0.7481	0.89812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7481	0.89812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152740000	87198000	65545000	0	0	0	152740000	87198000	65545000	0	0	0	0	0	0	702	4948	667	3940	5140;5141	5140			2	
AATSGVPSIYAPSTYAHLSPAK	1	Unmodified	2188.1164	0.11643333	3369	Q86X29	LSR	Lipolysis-stimulated lipoprotein receptor	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		65.296	65.296	3	0.00018946	58117	160511_QHF_FH_JSI11i_3	50.776	46.67			0.80801	0.73594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80801	0.73594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32722000	16127000	16595000	0	0	0	0	0	0	32722000	16127000	16595000	0	0	0	703	3369	668	3941	5142	5142			1	
AATSPALFNR	0	Unmodified	1046.5509	0.55089316	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	1	3	34.723	33.909	2	1.7419E-07	29678	160511_QHF_FH_JSI11i_3	118.5	85.233			0.93766	1.0441	15.114	6	1	Median	1.325	1.1321	NaN	1	0	Median	0.88317	1.0441	6.1431	2	0	Median	0.9817	0.90099	NaN	1	0	Median	0.86477	0.92503	26.216	2	1	Median	675090000	364190000	310910000	137770000	62029000	75744000	178640000	105160000	73485000	152720000	81246000	71474000	205960000	115750000	90204000	704	2517	669	3942;3943;3944;3945;3946;3947;3948	5143;5144;5145;5146;5147;5148;5149	5144			7	
AATTEPTEVEEVVPALEPTETLLSEK	1	Unmodified	2782.4012	0.40116677	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	100.96	100.83	3	1.4829E-12	91431	160511_QHF_FH_JSI12i_1	86.791	79.431			1.1343	1.0866	14.984	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1343	1.0866	NaN	1	1	Median	1.0274	1.073	21.166	2	2	Median	135880000	61012000	74872000	0	0	0	0	0	0	36921000	13330000	23591000	98963000	47682000	51280000	705	4519	670	3949;3950;3951	5150;5151;5152	5152			3	
AATTGSGVK	1	Acetyl (Protein N-term)	832.42905	0.42904669	2398	Q13404	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		4.33	4.71	2			1						1	1	1		11.844	9.0155	2	0.00082909	8245	160511_QHF_FH_JSI10i_1	36.557	36.557			1.0629	1.0355	6.0461	3	0	Median	1.3736	1.1264	NaN	1	0	Median	0.84377	1.0018	NaN	1	0	Median	1.0629	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	745920000	367720000	378200000	313430000	130270000	183160000	413850000	227390000	186460000	18642000	10068000	8573400	0	0	0	706	2398	671	3952;3953;3954	5153;5154;5155;5156	5153			4	
AATVHLMQ	0	Unmodified	869.44292	0.44292261	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.06	26.696	2	0.021685	22412	160511_QHF_FH_JSI11i_2	55.504	36.82			0.9042	0.94221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9042	0.94221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77180000	44781000	32399000	0	0	0	0	0	0	77180000	44781000	32399000	0	0	0	707	2918	672	3955	5157	5157			1	
AATVTGK	1	Unmodified	646.36499	0.36498987	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	4.6807	1.3843	2	0.020108	2305	160511_QHF_FH_JSI12i_1	57.281	33.309			1.0029	1.0127	20.487	7	1	Median	1.1128	0.92158	NaN	1	0	Median	0.9403	1.1001	7.2518	2	0	Median	1.0807	1.067	7.3905	2	0	Median	0.71834	0.7704	28.842	2	1	Median	4766200000	2473000000	2293200000	512360000	257060000	255300000	1270000000	660620000	609340000	1510900000	775550000	735340000	1473000000	779820000	693180000	708	793	673	3956;3957;3958;3959;3960;3961;3962	5158;5159;5160;5161;5162;5163;5164;5165;5166	5159			9	
AATVVAR	0	Unmodified	686.40752	0.40752338	977;1371	P10644;P31321	PRKAR1A;PRKAR1B	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.9786	7.5355	2	0.0038685	5255	160511_QHF_FH_JSI11i_2	101.72	41.927			0.98007	1.0939	12.74	4	1	Median	1.4049	1.2158	NaN	1	0	Median	0.84796	1.0275	NaN	1	0	Median	1.1328	1.1646	NaN	1	0	Median	0.81726	0.91755	NaN	1	1	Median	1405300000	711850000	693410000	268070000	109740000	158330000	227910000	127250000	100660000	562270000	278970000	283300000	347010000	195890000	151120000	709	977;1371	674	3963;3964;3965;3966	5167;5168;5169;5170;5171	5170			5	
AAVAATAAAK	1	Unmodified	843.48142	0.48141661	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.46	4	1	1			3				1	4	2	2	10.934	8.2301	2	0.00053444	5347	160513_QHF_FH_JSI12Kac_3	88.819	28.059			0.93302	0.99407	9.9888	9	0	Median	1.2201	1.0132	NaN	1	0	Median	0.91804	1.0722	15.099	4	0	Median	0.97898	0.95746	4.917	2	0	Median	0.90927	0.98613	1.1354	2	0	Median	1338400000	633640000	704720000	326450000	140680000	185780000	372850000	201300000	171550000	351300000	154240000	197060000	287760000	137430000	150340000	710	3170	675	3967;3968;3969;3970;3971;3972;3973;3974;3975	5172;5173;5174;5175;5176;5177	5176			5	
AAVAATAAAK	1	Acetyl (Protein N-term)	885.49198	0.4919813	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		40.683	31.773	2	0.0043606	13191	160513_QHF_FH_JSI11Kac_1	55.531	28.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	711	3170	675	3976	5178	5178			1	
AAVAFKNAK	2	Acetyl (K)	960.53927	0.53926584	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	36.175	26.731	2	0.0027229	15984	160513_QHF_FH_JSI12Kac_4	82.671	65.286			0.80566	0.87139	3.181	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69762	0.82627	NaN	1	0	Median	0.87061	0.87459	NaN	1	0	Median	0.80566	0.87139	NaN	1	0	Median	18294000	8859800	9434400	0	0	0	6616400	3719300	2897100	5014000	2076200	2937900	6663800	3064300	3599500	712	4311	676	3977;3978;3979	5179;5180;5181;5182;5183;5184	5183	3124		6	
AAVAGEDGR	0	Unmodified	844.40389	0.40389457	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.72	4	1			2	3				1	3	3	3	5.9615	2.1428	2	1.2753E-23	2172	160513_QHF_FH_JSI12Kac_3	178.3	115.58			1.011	1.042	20.388	10	0	Median	1.3269	1.1108	NaN	1	0	Median	1.1002	1.3212	12.107	3	0	Median	1.0155	0.97934	8.5206	3	0	Median	0.7342	0.81842	3.4649	3	0	Median	11744000000	5626100000	6117700000	2205000000	905450000	1299600000	2859300000	1361200000	1498100000	2797800000	1261700000	1536200000	3881600000	2097700000	1783900000	713	882	677	3980;3981;3982;3983;3984;3985;3986;3987;3988;3989	5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197	5195			13	
AAVAGLDK	1	Unmodified	743.41775	0.41775372	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.09	5					3	1			1	3	3	2	19.499	15.957	2	0.0017591	13769	160511_QHF_FH_JSI12i_1	85.212	35.085			0.91229	0.99336	22.081	9	1	Median	1.2457	1.0307	NaN	1	0	Median	0.85706	1.0027	31.523	3	0	Median	1.0063	0.98483	14.399	3	1	Median	0.84822	0.89736	12.09	2	0	Median	2720100000	1334600000	1385600000	549340000	182330000	367010000	879470000	463540000	415930000	705300000	372200000	333100000	586030000	316510000	269520000	714	1205	678	3990;3991;3992;3993;3994;3995;3996;3997;3998	5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209	5199			12	
AAVALGR	0	Unmodified	656.39696	0.3969587	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.481	49.815	2	0.023987	45255	160511_QHF_FH_JSI12i_1	49.312	49.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	715	2204	679	3999	5210	5210			1	
AAVAQKPR	1	Acetyl (K)	881.5083	0.50830006	964	P10244	MYBL2	Myb-related protein B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	18.164	10.35	2	0.0010056	7940	160513_QHF_FH_JSI11Kac_4	108.24	71.843			1.0155	1.0516	72.651	6	1	Median	NaN	NaN	NaN	0	0	Median	0.76161	0.90749	6.1219	2	0	Median	1.0976	1.0768	5.5369	2	0	Median	2.2569	2.5035	120.49	2	1	Median	91385000	45048000	46337000	0	0	0	33438000	19510000	13928000	30868000	16339000	14529000	27080000	9199400	17880000	716	964	680	4000;4001;4002;4003;4004;4005	5211;5212;5213;5214;5215;5216;5217	5214	731		7	
AAVATFLQSVQVPEFTPK	1	Unmodified	1932.0357	0.03566381	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	6.13	6	6	8						7	7	8	8	4	98.253	96.072	2;3	6.234E-210	87539	160511_QHF_FH_JSI12i_3	411.61	383.95			0.96401	1.0145	10.231	26	2	Median	1.1593	0.96262	14.219	6	1	Median	0.87592	1.0643	8.9895	8	1	Median	1.0267	0.9847	9.5586	8	0	Median	1.0053	1.0359	1.8328	4	0	Linear	13333000000	6573000000	6759600000	1900300000	889690000	1010600000	2983600000	1607200000	1376400000	4379200000	2191000000	2188200000	4069500000	1885100000	2184400000	717	1208	681	4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032	5218;5219;5220;5221;5222;5223;5224;5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236;5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254	5249			37	
AAVATTRGDQESAEANK	1	Unmodified	1717.8231	0.82310485	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			9.5879	9.0801	3	0.05421	6990	160511_QHF_FH_JSI10i_2	26.474	15.001			1.2981	1.2999	16.403	2	0	Median	1.3672	1.1576	NaN	1	0	Median	1.2325	1.4598	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99728000	40261000	59466000	49578000	22379000	27199000	50150000	17883000	32268000	0	0	0	0	0	0	718	5603	682	4033;4034	5255	5255			1	
AAVAVAVR	0	Acetyl (Protein N-term)	797.47594	0.4759373	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	1	0	0		By MS/MS			12	0					1						1			53.345	44.086	2	0.037	19373	160513_QHF_FH_JSI10Kac_2	33.738	6.6178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	719	5320	683	4035	5256	5256			1	
AAVAVVPLVSEDK	1	Unmodified	1296.7289	0.7289171	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	63.898	61.678	2	5.8991E-05	54344	160511_QHF_FH_JSI9i_1	107.83	97.002			1.4107	1.187	22.767	5	2	Median	1.4107	1.187	NaN	1	0	Median	0.95774	1.1419	NaN	1	1	Median	1.5003	1.42	NaN	1	0	Median	1.1541	1.2241	42.422	2	1	Median	203600000	100430000	103170000	64260000	37875000	26385000	43953000	20490000	23464000	51126000	18227000	32899000	44262000	23843000	20420000	720	484	684	4036;4037;4038;4039;4040	5257;5258;5259;5260;5261;5262	5261			6	
AAVAWANQNR	0	Unmodified	1099.5523	0.55229014	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			23.45	22.174	2	0.00049626	17869	160511_QHF_FH_JSI9i_3	72.789	56.587			0.74652	0.71326	30.142	2	0	Median	0.71003	0.57635	NaN	1	0	Median	0.78489	0.88269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74459000	41222000	33236000	43342000	23119000	20223000	31117000	18103000	13014000	0	0	0	0	0	0	721	4069	685	4041;4042	5263;5264	5263			2	
AAVAWEAGK	1	Unmodified	901.46577	0.46576654	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							2	3	2	3	26.355	25.725	2	0.00030496	21671	160511_QHF_FH_JSI12i_2	93.429	30.77			0.73035	0.73483	33.888	7	5	Median	0.89645	0.73483	NaN	1	1	Median	0.48598	0.5849	3.8634	2	2	Median	0.99871	0.9875	27.215	2	1	Median	0.51672	0.55203	44.536	2	1	Median	1006100000	648780000	357290000	22979000	13262000	9717200	380200000	269680000	110520000	332540000	151640000	180900000	270350000	214190000	56160000	722	1006	686	4043;4044;4045;4046;4047;4048;4049;4050;4051;4052	5265;5266;5267;5268;5269;5270;5271;5272;5273;5274	5266			10	
AAVAWEAGKPLSIEEIEVAPPK	2	Unmodified	2304.2365	0.23654846	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	3	3	84.796	84.296	3;4	2.9156E-46	73410	160511_QHF_FH_JSI12i_3	199.89	183.87			0.85937	0.91341	12.141	10	5	Median	0.9993	0.84756	NaN	1	1	Median	0.74908	0.92969	8.6266	3	1	Median	0.82599	0.769	13.597	3	1	Median	0.96191	0.99326	10.48	3	2	Median	1629000000	866090000	762860000	76208000	37965000	38243000	202390000	113130000	89256000	622560000	336420000	286140000	727810000	378580000	349230000	723	1006	687	4053;4054;4055;4056;4057;4058;4059;4060;4061;4062	5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286;5287;5288;5289;5290;5291	5290			17	
AAVDAGFVPNDMQVGQTGK	1	Unmodified	1903.9098	0.90981137	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	63.359	61.847	2;3	3.7706E-42	54561	160511_QHF_FH_JSI9i_1	202.25	169.75			1.0793	0.98277	16.154	9	0	Median	1.1831	0.97573	0.78783	2	0	Median	0.82589	0.98047	6.1871	2	0	Median	0.99535	0.97473	1.1614	2	0	Median	1.0887	1.1363	18.933	3	0	Median	4308000000	2178100000	2129900000	1371800000	634810000	736950000	1003900000	601150000	402780000	1155800000	575240000	580580000	776470000	366880000	409590000	724	1041	688	4063;4064;4065;4066;4067;4068;4069;4070;4071	5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308;5309;5310;5311	5306			20	
AAVDAGFVPNDMQVGQTGK	1	Oxidation (M)	1919.9047	0.90472599	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	49.702	49.036	2	0.0090196	44558	160511_QHF_FH_JSI12i_1	50.46	35.258			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	725	1041	688	4072	5312	5312		664	1	
AAVDGLSK	1	Unmodified	759.41267	0.41266834	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	1	3	15.926	14.281	2	0.0016392	12002	160511_QHF_FH_JSI10i_1	86.794	49.236			0.79859	0.81646	47.149	6	3	Median	0.73413	0.59098	45.887	2	2	Median	0.86754	1.0245	NaN	1	0	Median	1.1991	1.1593	NaN	1	0	Median	0.50199	0.54617	56.682	2	1	Median	3846500000	2602500000	1244100000	1432900000	995210000	437690000	513000000	238160000	274850000	517570000	211120000	306450000	1383000000	1158000000	225070000	726	2362	689	4073;4074;4075;4076;4077;4078;4079	5313;5314;5315;5316;5317;5318;5319;5320;5321	5317			9	
AAVDLEK	1	Acetyl (Protein N-term)	786.41233	0.41233399	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	2	2	38.666	36.365	2	0.0029238	32862	160511_QHF_FH_JSI11i_1	57.281	14.215			1.0582	1.01	18.37	5	0	Median	1.5161	1.2291	NaN	1	0	Median	1.2534	1.5178	NaN	1	0	Median	1.0461	1.0054	0.64712	2	0	Median	0.97593	1.0052	NaN	1	0	Median	347540000	176440000	171100000	82801000	38139000	44662000	80596000	40002000	40594000	81910000	46395000	35515000	102230000	51899000	50330000	727	1129	690	4080;4081;4082;4083;4084;4085	5322;5323;5324;5325;5326;5327;5328	5322			7	
AAVDLEKLR	1	Acetyl (K);Acetyl (Protein N-term)	1097.6081	0.60807369	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	1	1	0	1		By MS/MS	By MS/MS		11.7	0.471				1	2						2	1		79.278	70.853	2	0.0053695	29371	160513_QHF_FH_JSI10Kac_2	58.981	39.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	728	1129	691	4086;4087;4088	5329;5330;5331	5330	978		3	
AAVDYQK	1	Unmodified	793.39702	0.39701828	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.89	4	1				2	1			1	1	3	3	11.239	8.2839	2	0.0085928	5367	160513_QHF_FH_JSI12Kac_3	86.866	57.528			1.0258	1.0452	12.749	8	0	Median	1.5141	1.2062	NaN	1	0	Median	1.0535	1.218	NaN	1	0	Median	1.0452	1.0015	4.7497	3	0	Plateau	1.0066	1.0909	14.325	3	0	Median	4727000000	2020400000	2706500000	1199200000	431240000	768000000	1186100000	569270000	616840000	1046000000	482150000	563830000	1295600000	537770000	757880000	729	1370	692	4089;4090;4091;4092;4093;4094;4095;4096	5332;5333;5334;5335;5336	5335			5	
AAVDYQKVVR	1	Acetyl (K)	1189.6455	0.64552182	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		51.084	40.528	2	0.023614	23734	160513_QHF_FH_JSI11Kac_4	79.974	51.575			0.57902	0.6253	91.758	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0179	1.1964	NaN	1	0	Median	0.32938	0.32681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35524000	25318000	10205000	0	0	0	5093800	2325700	2768200	30430000	22993000	7437300	0	0	0	730	1370	693	4097;4098	5337	5337	1306		0	
AAVEALQSQALHATSQQPLRK	1	Unmodified	2246.2131	0.21312768	3853	Q92599	SEPT8	Septin-8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							2	3			50.398	48.816	3;4	7.4514E-10	39949	160511_QHF_FH_JSI9i_3	106.49	93.019			1.0176	0.93542	15.098	5	2	Median	1.1509	0.92335	1.8379	2	0	Median	0.80759	0.97967	20.624	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299200000	142960000	156240000	191660000	79518000	112140000	107540000	63445000	44098000	0	0	0	0	0	0	731	3853	694	4099;4100;4101;4102;4103	5338;5339;5340;5341;5342;5343;5344	5344			7	
AAVEDPR	0	Unmodified	756.37662	0.37661719	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	2					2				1		1	2	9.3539	5.4965	2	0.017673	6064	160511_QHF_FH_JSI12i_1	61.123	33.955			1.0077	0.94949	12.672	4	0	Median	1.0303	0.83007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0731	1.0431	NaN	1	0	Median	0.89108	0.95805	14.568	2	0	Median	555210000	292560000	262650000	262250000	117610000	144650000	0	0	0	6730600	3050700	3680000	286220000	171900000	114320000	732	1465	695	4104;4105;4106;4107	5345;5346;5347	5345			3	
AAVEDSGTTVETIK	1	Unmodified	1419.7093	0.70930387	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	2	2	1	35.567	32.181	2	1.5587E-10	28935	160511_QHF_FH_JSI12i_1	153.95	147.71			0.89813	0.87917	32.526	6	1	Median	0.97888	0.80054	NaN	1	0	Median	0.59596	0.67416	50.799	2	1	Median	0.91136	0.89079	32.837	2	0	Median	1.0445	1.0727	NaN	1	0	Median	458460000	236680000	221780000	104820000	63159000	41662000	136460000	70508000	65954000	116190000	53555000	62634000	100990000	49455000	51533000	733	2988	696	4108;4109;4110;4111;4112;4113	5348;5349;5350;5351;5352;5353;5354;5355;5356	5351			9	
AAVEEGIVLGGGCALLR	0	Unmodified	1683.8978	0.89779012	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	6	8	2							2	4	5	5	79.796	79.173	2;3	1.9134E-40	68562	160511_QHF_FH_JSI12i_2	205.12	171.71			1.0033	1.1265	29.705	15	4	Median	1.1029	0.95095	27.709	2	1	Median	0.95799	1.1166	9.9797	4	0	Median	0.96821	0.96543	22.146	4	1	Median	1.2806	1.4481	42.808	5	2	Median	2649300000	1262400000	1386800000	329740000	153410000	176320000	611450000	305870000	305580000	882240000	430190000	452050000	825860000	372960000	452900000	734	980	697	4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129	5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381	5361			25	
AAVELEEPEDAR	0	Unmodified	1327.6256	0.62557424	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	39.346	35.12	2	4.4072E-12	19877	160513_QHF_FH_JSI11Kac_3	123.63	99.47			0.99624	1.0985	22.413	7	1	Median	1.3418	1.0985	NaN	1	0	Median	0.68779	0.81589	42.331	2	1	Median	1.1816	1.1296	0.82552	2	0	Median	0.96849	1.0214	0.29762	2	0	Median	717210000	360340000	356870000	123910000	79551000	44360000	188560000	97369000	91186000	215480000	91976000	123500000	189260000	91442000	97822000	735	623	698	4130;4131;4132;4133;4134;4135;4136	5382;5383;5384;5385;5386;5387;5388;5389;5390	5385			8	
AAVENLPTFLVELSR	0	Unmodified	1657.9039	0.90392136	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.47	3	8	6						4	4	5	6	6	99.957	98.298	2;3	5.8227E-30	89279	160511_QHF_FH_JSI9i_2	231.52	180.25			1.0847	1.0881	10.558	21	2	Median	1.2096	1.0503	11.842	4	0	Median	0.92211	1.1479	12.129	5	1	Median	1.1044	1.0826	11.815	6	1	Median	1.0261	1.1044	5.8646	6	0	Median	10514000000	5254700000	5259200000	1177600000	552190000	625450000	1739100000	937660000	801390000	2809600000	1407900000	1401700000	4787600000	2357000000	2430600000	736	2585	699	4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155;4156;4157	5391;5392;5393;5394;5395;5396;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415	5403			24	
AAVESLGFILFR	0	Unmodified	1321.7394	0.73942221	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.34		4	2	2					8	2	4	5	5	95.792	90.742	2;3	2.1117E-44	87864	160511_QHF_FH_JSI12i_3	251.53	172.05			1.0234	1.0406	28.45	15	9	Median	1.778	1.5209	57.433	2	1	Median	1.0348	1.2293	13.899	4	2	Median	0.98787	0.92993	24.572	5	3	Median	1.0716	1.1622	20.358	4	3	Median	6500600000	3271600000	3229000000	1109500000	512190000	597320000	2177900000	1147700000	1030100000	1230800000	609920000	620830000	1982400000	1001700000	980710000	737	4272	700	4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173	5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435	5429			20	
AAVETLGVPCFLGGMAR	0	Unmodified	1747.8749	0.87494619	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		93.52	93.072	2	4.4651E-06	81766	160511_QHF_FH_JSI11i_2	143.79	110.56			0.66172	0.66406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66172	0.66406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28600000	16434000	12166000	0	0	0	0	0	0	28600000	16434000	12166000	0	0	0	738	10	701	4174	5436	5436			1	
AAVEWFDGK	1	Unmodified	1021.4869	0.48689592	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.6	4	4	2					3		3	3	3	4	53.29	51.431	2	3.9541E-06	44213	160511_QHF_FH_JSI11i_2	121.05	31.35			1.1386	1.2152	28.802	11	6	Median	1.1581	0.98116	24.579	3	1	Plateau	1.0478	1.2441	31.878	3	2	Median	1.6014	1.6083	53.621	2	1	Median	1.0757	1.2152	5.6469	3	2	Median	4348900000	1928000000	2420900000	780660000	310560000	470100000	1297000000	558640000	738380000	1229300000	537020000	692320000	1041900000	521790000	520060000	739	2178	702	4175;4176;4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187	5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449;5450;5451;5452;5453;5454;5455;5456	5450			20	
AAVGAGGSTAAPGPGAVSAGALEPGTASAAHR	0	Acetyl (Protein N-term)	2728.3529	0.35286864	2091	P78381	SLC35A2	UDP-galactose translocator	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	62.071	61.42	3	0.0013727	55895	160511_QHF_FH_JSI12i_1	36.202	27.695			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	740	2091	703	4188	5457	5457			1	
AAVGAGGSTAAPGPGAVSAGALEPGTASAAHRR	0	Acetyl (Protein N-term)	2884.454	0.45397967	2091	P78381	SLC35A2	UDP-galactose translocator	yes	yes	0	1	0	1	By MS/MS				3	0			1							1				55.377	53.811	3	0.0056739	44098	160511_QHF_FH_JSI9i_3	30.855	28.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	741	2091	704	4189	5458	5458			1	
AAVGEEK	1	Unmodified	702.35482	0.35481911	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	5.0125	4.792	2	0.031087	2618	160511_QHF_FH_JSI11i_1	51.787	23.681			0.95745	0.95757	6.1475	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.019	1.0001	NaN	1	0	Median	0.89959	0.91683	NaN	1	0	Median	360680000	186170000	174510000	0	0	0	0	0	0	184920000	95394000	89529000	175760000	90774000	84981000	742	1576	705	4190;4191	5459	5459			1	
AAVGQESPGGLEAGNAK	1	Unmodified	1554.7638	0.76379906	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	27.226	26.557	2	5.289E-42	23524	160511_QHF_FH_JSI11i_1	172.09	142.29			1.3851	1.208	8.083	3	1	Plateau	1.4557	1.208	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1461	1.0909	NaN	1	1	Median	1.2488	1.2797	NaN	1	0	Median	94826000	37468000	57358000	38250000	11278000	26971000	0	0	0	25340000	11198000	14142000	31236000	14991000	16244000	743	2789	706	4192;4193;4194;4195;4196	5460;5461;5462;5463;5464	5461			5	
AAVGRPLDK	1	Unmodified	925.53451	0.53451481	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		11.548	11.052	2;3	0.00017195	8592	160511_QHF_FH_JSI10i_3	82.287	54.274			1.1176	1.0758	7.6609	6	0	Median	1.4183	1.1401	1.3078	2	0	Median	0.86814	0.98538	5.5512	2	0	Median	1.1176	1.0758	6.7271	2	0	Median	NaN	NaN	NaN	0	0	Median	1782600000	962970000	819670000	561020000	267900000	293120000	607830000	362030000	245800000	613800000	333040000	280750000	0	0	0	744	3766	707	4197;4198;4199;4200;4201;4202	5465;5466;5467;5468;5469;5470	5468			6	
AAVGVKK	2	Unmodified	671.43301	0.43300985	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.97		3	5						3	3	2	3	3	5.4024	3.3225	2	0.0064241	2866	160511_QHF_FH_JSI10i_3	91.584	46.973			1.0857	1.1785	76.583	11	2	Median	1.8397	1.5508	47.354	3	0	Plateau	1.055	1.1935	7.028	2	0	Median	2.7995	2.8162	152.12	3	2	Median	0.66898	0.725	35.475	3	0	Median	12612000000	5045800000	7566200000	3517000000	1141200000	2375800000	2984400000	1268000000	1716400000	2425800000	861140000	1564700000	3684800000	1775500000	1909400000	745	1457	708	4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213	5471;5472;5473;5474;5475;5476;5477;5478;5479;5480	5473			10	
AAVHGLSMQQEIGFQK	1	Unmodified	1742.8774	0.87738903	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.672	53.12	3	0.011117	44361	160511_QHF_FH_JSI10i_3	43.813	32.868			1.0798	1.2736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0798	1.2736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15680000	8808000	6872300	0	0	0	15680000	8808000	6872300	0	0	0	0	0	0	746	2257	709	4214	5481	5481			1	
AAVHLEGK	1	Unmodified	823.4552	0.45520186	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	10.182	9.8683	2	0.00064881	7168	160511_QHF_FH_JSI12i_3	101.28	81.581			0.93655	0.93908	12.122	6	0	Median	1.1033	0.93619	NaN	1	0	Median	0.95626	1.1588	NaN	1	0	Median	1.0078	0.9944	7.6573	2	0	Median	0.80195	0.85868	6.489	2	0	Median	1075900000	576500000	499420000	160890000	68906000	91983000	158920000	85832000	73092000	368670000	198710000	169960000	387430000	223050000	164380000	747	1139	710	4215;4216;4217;4218;4219;4220	5482;5483;5484;5485;5486;5487	5487			6	
AAVHTYGIASVPNQPLK	1	Unmodified	1764.9523	0.95226853	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	49.986	49.297	2;3	1.4098E-07	43673	160511_QHF_FH_JSI11i_3	99.215	74.361			0.91337	0.97709	16.083	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92943	1.1126	14.364	2	0	Median	0.90229	0.83715	NaN	1	0	Median	0.92459	0.94979	NaN	1	0	Median	682600000	353420000	329180000	0	0	0	154020000	77552000	76469000	222640000	114000000	108640000	305940000	161860000	144080000	748	5301	711	4221;4222;4223;4224;4225	5488;5489;5490;5491;5492;5493	5490			6	
AAVHTYGIASVPNQPLKK	2	Unmodified	1893.0472	0.047231549	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.775	42.192	3	0.00042359	34481	160511_QHF_FH_JSI9i_3	62.055	56.395			0.93244	0.75321	NaN	1	1	Median	0.93244	0.75321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25267000	12516000	12751000	25267000	12516000	12751000	0	0	0	0	0	0	0	0	0	749	5301	712	4226	5494	5494			1	
AAVHYDR	0	Unmodified	830.4035	0.40350064	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	6.4346	3.7023	2	0.0055575	3658	160511_QHF_FH_JSI11i_3	94.407	52.905			0.86327	0.90169	12.038	12	0	Median	1.1441	0.98407	19.375	3	0	Median	0.79175	0.93773	11.481	3	0	Plateau	1.0138	0.98686	9.5173	3	0	Median	0.83596	0.85254	9.6489	3	0	Median	3412600000	1812600000	1600000000	399250000	175080000	224160000	521400000	270750000	250640000	1279800000	666910000	612870000	1212200000	699840000	512360000	750	3337	713	4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238	5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505	5496			11	
AAVIGDVIR	0	Unmodified	912.53927	0.53926584	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.87	2	4	3				1	3		1	5	4	3	49.283	44.981	2	5.674E-08	38725	160511_QHF_FH_JSI11i_2	127.56	74.01			0.84179	0.91171	29.613	11	7	Median	1.0191	0.87481	NaN	1	1	Median	0.7338	0.89148	33.342	4	3	Median	0.87957	0.91171	27.541	3	2	Median	0.84179	0.9474	43.621	3	1	Median	1915600000	1107200000	808390000	366250000	196930000	169320000	664190000	418790000	245390000	779780000	425730000	354060000	105380000	65765000	39610000	751	4940	714	4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250;4251	5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520	5512			14	
AAVIIMAVEK	1	Unmodified	1043.6049	0.60490256	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		69.562	59.216	2	0.0016237	32049	160513_QHF_FH_JSI11Kac_6	84.213	67.436			0.20505	0.19106	81.146	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.72194	0.86656	NaN	1	0	Median	0.36506	0.3525	88.179	2	1	Median	NaN	NaN	NaN	0	0	Median	87110000	76717000	10394000	0	0	0	2479000	1238500	1240500	84631000	75478000	9153200	0	0	0	752	641	715	4252;4253;4254	5521;5522;5523;5524;5525	5521			5	
AAVKDSCGK	2	Acetyl (K);Acetyl (Protein N-term)	1018.4753	0.47534495	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				5							2	2	1	27.445	19.88	2	0.01317	8658	160513_QHF_FH_JSI10Kac_1	45.081	34.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	753	1961	716	4255;4256;4257;4258;4259	5526;5527;5528;5529;5530	5529	1980		5	
AAVKEPLEFHAK	2	Acetyl (K);Acetyl (Protein N-term)	1422.7507	0.75071518	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	1	1	0	1				By MS/MS	14	0							2						2	72.697	62.075	2	0.0048714	33480	160513_QHF_FH_JSI12Kac_4	54.608	37.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	754	2213	717	4260;4261	5531;5532	5531	2330		2	
AAVKTLNPK	2	Acetyl (K);Acetyl (Protein N-term)	1024.5917	0.59169534	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.495				3	4						2	3	2	57.023	47.625	2	2.2724E-33	18863	160513_QHF_FH_JSI11Kac_1	130.27	83.846			0.93398	0.91418	11.751	5	0	Median	NaN	NaN	NaN	0	0	Median	0.75349	0.869	5.0292	2	0	Median	0.93398	0.91418	NaN	1	0	Median	1.036	1.0856	1.5565	2	0	Median	164300000	90660000	73637000	0	0	0	66183000	40698000	25484000	27371000	13999000	13372000	70743000	35963000	34780000	755	1494	718	4262;4263;4264;4265;4266;4267;4268	5533;5534;5535;5536;5537;5538;5539;5540;5541;5542;5543;5544;5545	5541	1504		13	
AAVLEAMTAFR	0	Unmodified	1178.6118	0.61177885	1037	P13716	ALAD	Delta-aminolevulinic acid dehydratase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	72.889	72.017	2	0.009527	62426	160511_QHF_FH_JSI12i_3	48.423	32.279			0.75331	0.8175	6.7961	2	1	Median	NaN	NaN	NaN	0	0	Median	0.73954	0.85775	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76733	0.77914	NaN	1	0	Median	67400000	33740000	33660000	0	0	0	33203000	19872000	13331000	0	0	0	34197000	13867000	20329000	756	1037	719	4269;4270	5546;5547	5547			2	
AAVLGENGR	0	Unmodified	885.46683	0.46682918	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	12.581	12.046	2	0.0030629	9349	160511_QHF_FH_JSI11i_2	61.962	21.859			1.273	1.1045	32.293	3	1	Median	1.2732	1.1045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.273	1.2824	NaN	1	0	Median	0.62232	0.69065	NaN	1	0	Median	167390000	79321000	88072000	42601000	19773000	22829000	0	0	0	69333000	29417000	39916000	55458000	30131000	25328000	757	5375	720	4271;4272;4273;4274	5548;5549;5550;5551	5550			4	
AAVLIFANK	1	Unmodified	945.56475	0.56475231	4155	Q96KC2	ARL5B	ADP-ribosylation factor-like protein 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.22			4					2	4	3	3	2	2	62.257	56.122	2	5.2244E-07	30450	160513_QHF_FH_JSI11Kac_6	133.47	45.44			0.84497	0.78452	24.689	10	3	Median	0.83949	0.71598	8.9623	3	1	Plateau	0.70568	0.81885	15.532	3	1	Median	0.7285	0.70258	57.425	2	1	Median	0.85853	0.90935	26.939	2	0	Median	208450000	116590000	91857000	54141000	28989000	25152000	44877000	25009000	19868000	63802000	35396000	28406000	45626000	27195000	18431000	758	4155	721	4275;4276;4277;4278;4279;4280;4281;4282;4283;4284	5552;5553;5554;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564	5556			13	
AAVLLEQER	0	Unmodified	1027.5662	0.56620887	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	31.503	30.375	2	1.1908E-05	25756	160511_QHF_FH_JSI11i_2	104.06	69.249			0.80556	0.95396	46.43	2	1	Median	NaN	NaN	NaN	0	0	Median	0.55556	0.68699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.168	1.3247	NaN	1	0	Median	98631000	56545000	42085000	0	0	0	47665000	30282000	17383000	0	0	0	50965000	26263000	24702000	759	2412	722	4285;4286;4287	5565;5566;5567	5566			3	
AAVLMLSWK	1	Unmodified	1017.5681	0.56812313	3161	Q6V1X1	DPP8	Dipeptidyl peptidase 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.43	76.153	2	0.0088025	66127	160511_QHF_FH_JSI12i_3	52.482	19.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	760	3161	723	4288	5568	5568			1	
AAVLNAER	0	Acetyl (Protein N-term)	884.47158	0.4715802	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		43.033	42.369	2	0.00016917	38071	160511_QHF_FH_JSI10i_1	125.25	76.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	761	4700	724	4289;4290;4291	5569;5570;5571	5570			3	
AAVLQQVLER	0	Acetyl (Protein N-term)	1167.6612	0.66117189	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			101.65	101.62	2	3.8973E-14	89446	160511_QHF_FH_JSI9i_2	153.08	119.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	762	1016	725	4292;4293	5572;5573	5573			2	
AAVMATLLFPGR	0	Unmodified	1245.6904	0.69036353	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	83.484	76.64	2	1.381E-39	42378	160513_QHF_FH_JSI10Kac_6	196.79	168.97			1.1258	1.0433	11.007	5	0	Median	1.3113	1.1114	12.015	2	0	Median	0.87746	1.0433	NaN	1	0	Median	1.1258	1.0577	NaN	1	0	Median	0.85286	0.88811	NaN	1	0	Median	553110000	272000000	281110000	123260000	49595000	73667000	254280000	135070000	119210000	139650000	68291000	71362000	35914000	19039000	16875000	763	4101	726	4294;4295;4296;4297;4298	5574;5575;5576;5577;5578;5579;5580;5581;5582;5583	5583			10	
AAVMHDILDMMPEGIK	1	Unmodified	1769.8514	0.85143355	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	91.558	91.285	2;3	1.0382E-27	81197	160511_QHF_FH_JSI11i_3	149.26	117.25			0.97916	0.98811	11.301	8	1	Median	1.2423	1.08	NaN	1	0	Median	0.81166	1.0023	NaN	1	0	Median	1.0613	0.97411	8.1782	3	1	Median	1.0452	1.0485	15.718	3	0	Plateau	626640000	310800000	315840000	31952000	17519000	14433000	66674000	40387000	26288000	226060000	109460000	116600000	301950000	143430000	158520000	764	3101	727	4299;4300;4301;4302;4303;4304;4305;4306;4307	5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594	5587			11	
AAVMVHQLSK	1	Unmodified	1082.5906	0.59064948	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	1	3	2	21.972	21.493	2;3	3.2155E-05	17521	160511_QHF_FH_JSI12i_3	96.331	82.752			0.77931	0.77662	46.522	8	4	Median	0.49123	0.40559	47.055	2	2	Median	0.39263	0.45819	NaN	1	0	Median	0.97931	0.9295	26.826	3	2	Median	0.77931	0.78769	2.8487	2	0	Median	647760000	355680000	292080000	56793000	33052000	23741000	62723000	38449000	24275000	201510000	109830000	91678000	326740000	174350000	152390000	765	1422	728	4308;4309;4310;4311;4312;4313;4314;4315	5595;5596;5597;5598;5599;5600;5601;5602	5600			7	
AAVMVYDDANK	1	Oxidation (M)	1211.5492	0.54923818	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	23.603	23.084	2	0.0032182	20180	160511_QHF_FH_JSI10i_1	69.276	39.466			0.35458	0.37627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35458	0.37627	NaN	1	1	Median	22082000	15851000	6230400	0	0	0	0	0	0	0	0	0	22082000	15851000	6230400	766	3570	729	4316;4317	5603;5604	5604		2270	2	
AAVMVYDDANK	1	Unmodified	1195.5543	0.55432356	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	40.096	31.213	2	8.2326E-05	17537	160513_QHF_FH_JSI12Kac_3	98.033	73.878			1.4267	1.4409	45.082	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1032	1.9819	NaN	1	1	Median	0.96782	1.0476	NaN	1	1	Median	4420100	1700500	2719500	0	0	0	0	0	0	2613900	646460	1967400	1806200	1054100	752120	767	3570	729	4318;4319;4320;4321	5605;5606;5607;5608	5607			4	
AAVPDAVSK	1	Unmodified	856.46543	0.46543219	2467	Q13733	ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	69.724	69.074	2	0.013505	62746	160511_QHF_FH_JSI12i_1	46.426	29.499			0.87912	0.83427	12.921	3	0	Plateau	1.2685	1.0759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87912	0.83427	NaN	1	0	Median	0.93339	0.98559	NaN	1	0	Median	141930000	69635000	72290000	36727000	17496000	19232000	0	0	0	62586000	30027000	32559000	42612000	22113000	20500000	768	2467	730	4322;4323;4324	5609;5610;5611	5610			3	
AAVPELLQQQEEDR	0	Acetyl (Protein N-term)	1666.8162	0.81622856	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		78.149	77.817	2	0.0006446	70663	160511_QHF_FH_JSI11i_1	71.555	55.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	769	5687	731	4325	5612	5612			1	
AAVPELLQQQEEDRSK	1	Acetyl (Protein N-term)	1881.9432	0.94321999	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	68.18	67.596	2;3	1.7812E-10	60029	160511_QHF_FH_JSI9i_1	110.38	110.38			1.0082	1.046	9.8552	5	0	Median	1.1801	0.97796	NaN	1	0	Median	0.93009	1.0676	NaN	1	0	Median	1.0754	1.0466	NaN	1	0	Median	0.90854	0.93747	15.489	2	0	Median	452900000	221150000	231750000	114360000	52108000	62250000	120160000	63306000	56851000	104510000	48445000	56069000	113870000	57292000	56579000	770	5687	732	4326;4327;4328;4329;4330	5613;5614;5615;5616;5617;5618;5619;5620;5621	5621			9	
AAVPSGASTGIYEALELR	0	Unmodified	1803.9367	0.93667805	854;1044;922	P06733;P09104;P13929	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.67	7	9	8					1	1	7	7	7	5	82.509	81.148	2;3	1.8237E-48	74796	160511_QHF_FH_JSI12i_1	251.84	225.79			0.85988	0.91346	13.898	25	3	Median	1.1675	0.97527	24.59	7	2	Median	0.75828	0.88533	7.4517	6	0	Median	0.85988	0.87741	7.0791	7	0	Median	0.8748	0.93679	7.678	5	1	Median	11428000000	6207100000	5221000000	2094100000	960890000	1133200000	3698800000	2152300000	1546500000	3121500000	1683100000	1438300000	2513800000	1410800000	1103000000	771	854;922;1044	733	4331;4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356	5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682	5641			61	
AAVPSGASTGIYEALELRDNDK	1	Unmodified	2276.1285	0.12845458	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.43	2	19	15					1	4	9	13	13	6	73.27	71.484	2;3;4	7.9952E-37	60203	160511_QHF_FH_JSI10i_3	190.37	174.6			1.0807	0.72205	17.264	39	15	Linear	1.2693	1.1106	7.561	9	5	Median	0.95048	1.168	24.028	11	4	Median	1.0952	1.0905	16.61	13	6	Median	0.95436	0.98304	13.595	6	0	Median	64750000000	32124000000	32626000000	9484300000	4255300000	5229000000	19678000000	10583000000	9095400000	29901000000	14448000000	15453000000	5686900000	2838400000	2848500000	772	854	734	4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389;4390;4391;4392;4393;4394;4395;4396;4397	5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776	5709			93	
AAVPSGASTGIYEALELRDNDKTR	1	Acetyl (K)	2575.2878	0.28780876	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		78.097	68.779	3	1.0361E-08	37627	160513_QHF_FH_JSI11Kac_6	89.873	66.147			0.74881	0.7523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74881	0.7523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35871000	21373000	14498000	0	0	0	0	0	0	35871000	21373000	14498000	0	0	0	773	854	735	4398	5777	5777	516		1	
AAVPSIK	1	Unmodified	684.41703	0.41702544	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.24	4	4	6			3	3	3	3	5	7	7	7	26.213	21.037	2	0.0045962	5817	160513_QHF_FH_JSI9Kac_3	97.071	52.46			1.0008	1.0035	23.602	24	0	Median	1.1906	0.98571	33.588	5	0	Median	0.90797	1.0888	26.57	7	0	Median	1.0069	0.98763	13.722	6	0	Median	0.95187	1.0185	9.3064	6	0	Median	23895000000	11659000000	12236000000	6012400000	2656000000	3356400000	5068500000	2558300000	2510200000	7108000000	3459400000	3648600000	5706100000	2985600000	2720500000	774	775	736	4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424	5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824	5800			47	
AAVQAAEVK	1	Unmodified	885.49198	0.4919813	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	23.935	23.064	2	0.025193	19749	160511_QHF_FH_JSI9i_1	41.227	4.5261			0.97547	0.90938	48.115	2	0	Median	1.5568	1.2779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61122	0.64713	NaN	1	0	Median	328620000	174570000	154050000	122830000	65094000	57739000	0	0	0	0	0	0	205790000	109480000	96311000	775	2614	737	4425;4426	5825;5826	5826			2	
AAVQAAEVK	1	Acetyl (Protein N-term)	927.50255	0.50254598	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	4.84	2			3	1					1	1	1	3	37.54	31.352	2	4.1727E-05	27929	160511_QHF_FH_JSI9i_1	60.436	14.718			1.003	0.93527	9.5908	5	0	Median	1.0648	0.87915	NaN	1	0	Median	0.75236	0.86652	NaN	1	0	Median	1.0737	1.0415	NaN	1	0	Median	0.93413	0.99953	9.3962	2	0	Median	901060000	444430000	456620000	478900000	223820000	255080000	6797600	3941400	2856300	12721000	7223600	5497300	402630000	209450000	193190000	776	2614	737	4427;4428;4429;4430;4431;4432	5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837	5830			11	
AAVQAAEVKVDGSEPK	2	Unmodified	1597.8312	0.83115034	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		62.776	62.334	2	0.048011	56657	160511_QHF_FH_JSI11i_1	48.004	33.031			1.0145	0.97273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0145	0.97273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20325000	9480100	10845000	0	0	0	0	0	0	20325000	9480100	10845000	0	0	0	777	2614	738	4433	5838	5838			1	
AAVQELSSSILAGEDPEER	0	Unmodified	1999.9698	0.96982867	1681	P49768	PSEN1	Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	70.289	69.862	3	0.0058238	63229	160511_QHF_FH_JSI10i_1	34.649	16.732			0.45619	0.50386	30.598	2	1	Median	NaN	NaN	NaN	0	0	Median	0.34788	0.40583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59822	0.62557	NaN	1	0	Median	49203000	33695000	15508000	0	0	0	28949000	20822000	8126300	0	0	0	20255000	12873000	7381900	778	1681	739	4434;4435	5839;5840	5840			1	
AAVQFLNNAWGIQK	1	Unmodified	1558.8256	0.82561145	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.685	77.926	2	2.242E-40	69612	160511_QHF_FH_JSI11i_3	207.83	196.51			0.90352	0.91116	17.644	4	2	Median	1.4523	1.1908	NaN	1	0	Median	0.74808	0.86792	NaN	1	1	Median	0.87746	0.78874	NaN	1	0	Median	0.93035	0.95656	NaN	1	1	Median	115370000	62166000	53209000	21501000	8956900	12544000	13031000	7929300	5102100	34269000	22129000	12141000	46573000	23151000	23422000	779	5429	740	4436;4437;4438;4439	5841;5842;5843;5844	5841			4	
AAVQKAIPMYK	2	Acetyl (K)	1260.69	0.69002918	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		63.686	52.622	2	0.012843	29562	160513_QHF_FH_JSI11Kac_4	62.546	48.428			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9110400	9110400	0	0	0	0	0	0	0	9110400	9110400	0	0	0	0	780	1455	741	4440	5845	5845	1434		1	
AAVQMDPELAK	1	Acetyl (Protein N-term)	1213.6013	0.60127375	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.055	59.411	2	0.00041675	53899	160511_QHF_FH_JSI12i_1	76.1	70.941			0.48445	0.45186	53.432	4	4	Median	0.45746	0.37138	NaN	1	1	Median	0.23199	0.27446	NaN	1	1	Median	0.98719	0.94566	NaN	1	1	Median	0.51304	0.54978	NaN	1	1	Median	325840000	249030000	76817000	82136000	57211000	24925000	110700000	88510000	22187000	25617000	11622000	13995000	107390000	91683000	15709000	781	5553	742	4441;4442;4443;4444	5846;5847;5848;5849	5847			4	
AAVQVLDDIEK	1	Unmodified	1199.6398	0.63976774	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.811	57.16	2	9.8368E-10	51749	160511_QHF_FH_JSI11i_1	136.63	78.201			1.2433	1.1036	29.782	4	0	Median	1.1722	0.94589	NaN	1	0	Median	0.65798	0.76408	NaN	1	0	Median	1.3187	1.2876	NaN	1	0	Median	1.4146	1.4767	NaN	1	0	Median	229310000	111920000	117380000	41887000	16242000	25644000	70144000	43233000	26912000	54081000	24176000	29904000	63196000	28272000	34924000	782	1200	743	4445;4446;4447;4448	5850;5851;5852;5853;5854;5855;5856	5850			7	
AAVSHWQQQSYLDSGIHSGATTTAPSLSGK	1	Unmodified	3084.4901	0.4900904	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.17	4.84			5						1	3	2	1		58.95	55.939	3;4	9.8624E-39	46190	160511_QHF_FH_JSI9i_3	149.57	143.91			0.76457	0.91568	14.765	3	0	Plateau	0.99251	0.80882	NaN	1	0	Median	0.75397	0.91568	NaN	1	0	Median	1.1898	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	235330000	127160000	108170000	81397000	43052000	38345000	82904000	50560000	32344000	71026000	33546000	37480000	0	0	0	783	1422	744	4449;4450;4451;4452;4453;4454	5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868	5866			12	
AAVSWLTPAPSK	1	Unmodified	1226.6659	0.66592292	4812	Q9H9L3	ISG20L2	Interferon-stimulated 20 kDa exonuclease-like 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.923	55.675	2	0.00018466	47799	160511_QHF_FH_JSI12i_3	97.456	77.127			1.9206	2.0235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9206	2.0235	NaN	1	1	Median	18315000	6009900	12305000	0	0	0	0	0	0	0	0	0	18315000	6009900	12305000	784	4812	745	4455	5869	5869			1	
AAVTPGK	1	Unmodified	642.37008	0.37007525	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.72	4	1	2			2	2			2	1	4	4	6.6341	3.7956	2	0.0041237	4008	160511_QHF_FH_JSI12i_1	100.07	33.032			0.91065	0.926	9.2914	11	0	Median	1.2837	1.0934	1.3128	2	0	Median	0.75603	0.90937	NaN	1	0	Median	0.96411	0.94515	6.761	4	0	Median	0.83759	0.88656	8.1247	4	0	Median	10538000000	5061000000	5477200000	2371700000	963730000	1408000000	2463000000	1184400000	1278500000	2951100000	1453300000	1497800000	2752300000	1459400000	1292900000	785	1154	746	4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466	5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883	5874			14	
AAVTPGKK	2	Unmodified	770.46504	0.46503826	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.66	2	3	4					4	4	4	5	5	3	5.1783	1.0487	2	0.00047098	2547	160511_QHF_FH_JSI9i_2	107.43	72.537			1.0323	0.97835	21.311	17	0	Plateau	1.3516	1.1564	25.728	4	0	Linear	0.9014	1.031	25.12	5	0	Median	0.93967	0.91995	16.027	5	0	Median	1.1083	1.1032	24.638	3	0	Plateau	23265000000	11471000000	11794000000	4540000000	1908400000	2631600000	4805200000	2614700000	2190600000	5659500000	3141400000	2518100000	8260600000	3806500000	4454000000	786	1154	747	4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483	5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905;5906;5907;5908;5909;5910	5896			27	
AAVTSLFAK	1	Unmodified	906.51747	0.51746776	72	CON__Q3SX09			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	51.184	50.199	2	2.1385E-05	44465	160511_QHF_FH_JSI11i_3	106.36	72.618		+	6.2943	6.1488	169.81	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.30745	0.35384	NaN	1	0	Median	0.60829	0.57449	NaN	1	0	Median	8.1022	8.2862	NaN	1	1	Median	11792000000	3926200000	7865400000	0	0	0	967970000	763030000	204940000	2325000000	1154900000	1170100000	8498600000	2008200000	6490400000	787	72	748	4484;4485;4486	5911;5912;5913	5911			3	
AAVTSLFAKVK	2	Acetyl (K)	1175.6914	0.69140938	72	CON__Q3SX09			yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		78.791	68.839	2	2.2333E-11	37623	160513_QHF_FH_JSI11Kac_6	143.89	117.95		+	0.51965	0.4995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51965	0.4995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33064000	23126000	9938300	0	0	0	0	0	0	33064000	23126000	9938300	0	0	0	788	72	749	4487;4488	5914;5915	5914	45		2	
AAVVENVVK	1	Acetyl (Protein N-term)	969.5495	0.54949617	3884	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	71.132	70.544	2	1.8806E-06	64014	160511_QHF_FH_JSI10i_1	75.109	56.379			1.0593	1.0365	12.739	3	0	Plateau	1.0544	0.88579	NaN	1	0	Median	0.88338	1.0365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0593	1.1399	NaN	1	0	Median	109660000	56009000	53656000	36507000	18541000	17966000	36108000	20947000	15161000	0	0	0	37050000	16521000	20530000	789	3884	750	4489;4490;4491	5916;5917;5918;5919	5917			4	
AAVVESHK	1	Unmodified	839.45012	0.45011648	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.02		3	3				1	3		2	3	2	3	5.3175	0.86253	2	0.00016356	2604	160511_QHF_FH_JSI9i_2	123.69	104.88			1.1138	1.1868	31.018	9	0	Median	1.6372	1.3699	41.969	2	0	Median	1.3194	1.6177	44.17	3	0	Median	0.95984	0.91163	8.3397	2	0	Median	1.0836	1.2228	4.2228	2	0	Median	916740000	454930000	461810000	253890000	111760000	142130000	229230000	114310000	114920000	101860000	53320000	48542000	331760000	175540000	156220000	790	765	751	4492;4493;4494;4495;4496;4497;4498;4499;4500;4501	5920;5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934	5926			15	
AAVVHHFESFPAGSTLIFYK	1	Unmodified	2220.1368	0.13677484	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			12						9	6	7	4	4	78.489	73.926	3;4	6.1292E-105	38559	160513_QHF_FH_JSI10Kac_6	240.21	228.08			1.0633	0.99376	17.715	19	5	Median	1.2397	1.027	10.847	6	1	Median	0.75531	0.84702	23.295	5	2	Median	1.144	1.0792	4.6401	4	2	Median	0.94939	0.98796	11.212	4	0	Median	4579300000	2240400000	2338900000	1122800000	509120000	613690000	1501700000	799480000	702200000	1263500000	580100000	683440000	691270000	351700000	339570000	791	3660	752	4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522	5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967	5965			33	
AAVVKFHPIQGHR	1	Acetyl (K)	1500.8314	0.83136553	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	3	1	42.095	32.859	2;3;4	3.3177E-17	18248	160513_QHF_FH_JSI10Kac_6	139.32	118.54			0.46567	0.49962	103.04	5	1	Median	NaN	NaN	NaN	0	0	Median	1.4967	1.7663	4.2461	2	0	Median	0.24019	0.22817	10.155	2	0	Median	0.46567	0.49962	NaN	1	1	Median	132530000	91801000	40732000	0	0	0	30555000	13705000	16850000	94460000	72390000	22070000	7518100	5705800	1812300	792	2361	753	4523;4524;4525;4526;4527;4528	5968;5969;5970;5971;5972;5973;5974;5975	5973	2433		8	
AAVVPLGTWR	0	Unmodified	1068.608	0.60801411	2634	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	61.141	60.488	2	0.00053516	52213	160511_QHF_FH_JSI12i_3	87.308	53.511			1.1231	1.2485	32.163	6	1	Median	2.0149	1.7245	NaN	1	0	Median	0.86525	1.0566	NaN	1	0	Median	1.1852	1.1745	32.834	2	0	Median	0.96904	1.053	47.692	2	1	Median	1257600000	654960000	602640000	119510000	37022000	82490000	161460000	83260000	78202000	479040000	235670000	243370000	497590000	299010000	198580000	793	2634	754	4529;4530;4531;4532;4533;4534	5976;5977;5978;5979;5980	5980			5	
AAVVVSK	1	Unmodified	672.41703	0.41702544	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	11.609	11.144	2	0.0055575	8977	160511_QHF_FH_JSI10i_1	94.407	49.796			0.77643	0.83132	30.972	8	3	Median	0.80497	0.67071	38.776	2	1	Median	0.51613	0.62571	31.767	2	1	Median	0.86216	0.85296	35.345	2	1	Median	0.93775	1.0131	0.32065	2	0	Median	2927900000	1585700000	1342200000	625050000	330680000	294370000	777360000	451660000	325700000	703660000	352450000	351200000	821880000	450900000	370970000	794	2586	755	4535;4536;4537;4538;4539;4540;4541;4542	5981;5982;5983;5984;5985;5986;5987;5988;5989;5990	5986			10	
AAVWEITGAEFSK	1	Unmodified	1407.7034	0.70343063	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.732	74.877	2	2.1855E-06	64756	160511_QHF_FH_JSI12i_2	120.77	101.46			1.2251	1.2302	8.954	4	3	Linear	1.6813	1.4304	NaN	1	1	Median	1.0315	1.2594	NaN	1	0	Median	1.18	1.1914	NaN	1	1	Median	1.272	1.4156	NaN	1	1	Median	193390000	98091000	95297000	28940000	12631000	16309000	39207000	19012000	20195000	69864000	39861000	30003000	55378000	26588000	28791000	795	1694	756	4543;4544;4545;4546	5991;5992;5993;5994;5995	5991			5	
AAVWEVDFPDVAR	0	Unmodified	1473.7252	0.72522871	407	O60294	LCMT2	tRNA wybutosine-synthesizing protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.564	86.574	2	0.00012322	74824	160511_QHF_FH_JSI12i_2	73.499	40.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	796	407	757	4547	5996	5996			1	
AAVYVLIR	0	Unmodified	903.55419	0.55418762	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.773	53.532	2	9.3622E-07	28422	160513_QHF_FH_JSI9Kac_6	137.44	87.32			1.0908	1.0604	5.3161	4	0	Median	1.1962	1.0209	NaN	1	0	Median	0.85117	0.99803	NaN	1	0	Median	1.1319	1.1087	NaN	1	0	Median	1.0512	1.1014	NaN	1	0	Median	190750000	99702000	91047000	20974000	9463300	11511000	87944000	49942000	38002000	44514000	20833000	23681000	37317000	19464000	17853000	797	4460	758	4548;4549;4550;4551	5997;5998;5999;6000;6001;6002	5999			6	
AAWEAGK	1	Unmodified	731.36024	0.36023884	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	12.475	11.948	2	0.01534	9336	160511_QHF_FH_JSI12i_2	64.803	64.803			0.9801	1.0741	18.404	4	0	Median	0.96351	0.81212	NaN	1	0	Median	0.94458	1.1494	NaN	1	0	Median	0.99698	1.0038	NaN	1	0	Median	1.091	1.2339	NaN	1	0	Median	1157700000	556320000	601350000	237830000	99422000	138410000	226310000	133040000	93273000	366000000	173280000	192720000	327520000	150580000	176940000	798	1249	759	4552;4553;4554;4555	6003;6004;6005;6006	6003			4	
AAWEAYLSR	0	Unmodified	1065.5243	0.52434406	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.43	56.306	2	0.0003707	49990	160511_QHF_FH_JSI11i_3	81.972	51.805			1.0093	0.98259	7.9755	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0844	1.0396	NaN	1	0	Median	0.93941	0.92871	NaN	1	0	Median	657760000	286610000	371140000	0	0	0	0	0	0	305350000	132720000	172620000	352410000	153890000	198520000	799	989	760	4556;4557	6007;6008	6007			2	
AAWEHMK	1	Unmodified	871.40106	0.4010578	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	14.098	14.146	2;3	0.0042189	10916	160511_QHF_FH_JSI12i_3	57.281	36.726			2.1168	2.1564	97.576	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4915	3.2793	NaN	1	1	Median	1.0411	1.0491	101.9	2	1	Median	374880000	152650000	222220000	0	0	0	0	0	0	58799000	13753000	45046000	316080000	138900000	177180000	800	1747	761	4558;4559;4560;4561	6009;6010;6011;6012;6013	6012			5	
AAWEHMKK	2	Acetyl (K)	1041.5066	0.5065855	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	1	2	30.896	22.246	2;3	0.017719	12739	160513_QHF_FH_JSI10Kac_6	93.429	71.343			0.9807	0.93372	77.213	8	1	Median	1.0725	0.92537	124.06	3	1	Median	0.901	1.0381	23.439	2	0	Median	1.1487	1.1519	NaN	1	0	Median	0.89392	0.93372	1.0774	2	0	Median	180350000	94898000	85456000	32819000	18910000	13908000	66919000	35371000	31548000	36757000	18832000	17925000	43859000	21784000	22074000	801	1747	762	4562;4563;4564;4565;4566;4567;4568;4569	6014;6015;6016;6017	6017	1761		4	
AAWEVDSGRR	0	Unmodified	1145.5578	0.55776945	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.62	0.484		3	5							5	3			19.1	18.045	2;3	4.7832E-06	14357	160511_QHF_FH_JSI9i_3	109.48	71.92			1.0914	0.95359	23.984	8	1	Median	1.1195	0.90574	21.142	5	1	Median	0.8548	1.004	33.045	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	834840000	380330000	454510000	538660000	229960000	308690000	296180000	150360000	145820000	0	0	0	0	0	0	802	997	763	4570;4571;4572;4573;4574;4575;4576;4577	6018;6019;6020;6021;6022;6023;6024	6022			7	
AAWGEETDYTPVWCMR	0	Unmodified	1970.8291	0.82911821	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	81.43	81.205	2	1.5835E-21	70506	160511_QHF_FH_JSI12i_3	171.05	148.82			1.3947	1.4332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3947	1.4332	NaN	1	0	Median	16826000	5651100	11175000	0	0	0	0	0	0	0	0	0	16826000	5651100	11175000	803	843	764	4578;4579	6025;6026;6027	6027			3	
AAWGKVGGHAAEYGAEALER	1	Acetyl (K)	2084.0076	0.007551579	49	CON__P01966			yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	70.128	61.252	3	3.755E-35	32452	160513_QHF_FH_JSI9Kac_6	173.43	45.419		+	0.74554	0.84979	28.117	3	0	Plateau	0.99787	0.84979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59448	0.57078	NaN	1	0	Median	0.93498	0.98245	NaN	1	0	Median	327350000	213490000	113860000	44091000	18719000	25372000	68098000	68098000	0	108120000	70887000	37234000	107040000	55790000	51254000	804	49	765	4580;4581;4582;4583	6028;6029;6030;6031;6032;6033;6034;6035	6031	16		8	
AAWYGGLAVLLQTSPEAPYIYALLSR	0	Unmodified	2822.5007	0.50070207	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.84	93.39	3	7.0731E-23	56006	160513_QHF_FH_JSI10Kac_6	126.45	114.92			1.0658	1.0702	8.972	2	1	Median	1.3426	1.1403	NaN	1	1	Median	0.84616	1.0044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295440000	155460000	139970000	42472000	16415000	26057000	252960000	139050000	113910000	0	0	0	0	0	0	805	5119	766	4584;4585	6036;6037	6037			2	
AAYAGGLVLDPK	1	Unmodified	1173.6394	0.63937381	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		54.092	53.429	2	0.00010796	48240	160511_QHF_FH_JSI10i_1	88.37	58.897			0.8997	0.9922	5.2977	3	2	Plateau	1.206	0.9922	NaN	1	1	Median	0.8997	1.0692	NaN	1	0	Median	0.99403	0.96508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	220420000	110030000	110390000	56501000	23576000	32925000	74699000	40783000	33916000	89216000	45667000	43549000	0	0	0	806	940	767	4586;4587;4588;4589	6038;6039;6040;6041;6042	6040			5	
AAYDVSSFSFFQR	0	Unmodified	1523.7045	0.70449327	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7.33	6.13			2						1		2		1	82.897	80.548	2	7.8189E-51	42100	160513_QHF_FH_JSI10Kac_6	197.21	179.98			1.0899	1.1259	21.288	3	2	Median	NaN	NaN	NaN	0	0	Median	0.87071	1.032	29.255	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.1259	NaN	1	1	Median	236250000	121850000	114390000	0	0	0	97228000	54322000	42906000	0	0	0	139020000	67532000	71488000	807	295	768	4590;4591;4592	6043;6044;6045	6045			2	
AAYEAELGDAR	0	Unmodified	1164.5411	0.54111633	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.2	6.37	3						2			1	2		2	32.567	28.305	2	6.2537E-13	25625	160511_QHF_FH_JSI12i_1	144.77	126.95			0.9534	0.97977	7.0134	5	1	Median	1.2086	0.97977	NaN	1	0	Median	0.74939	0.88453	0.080898	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96151	1.0144	0.10558	2	0	Median	1802400000	932740000	869700000	418360000	197120000	221230000	796830000	447240000	349590000	0	0	0	587240000	288370000	298870000	808	791	769	4593;4594;4595;4596;4597	6046;6047;6048;6049;6050;6051	6047			6	
AAYEAELGDARK	1	Unmodified	1292.6361	0.63607935	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.08	6	8	9				5	7	1	6	10	10	10	26.271	22.434	2;3	3.2351E-65	18612	160511_QHF_FH_JSI12i_3	188.96	169.2			1.0567	1.074	14.331	35	2	Median	1.5025	1.219	14.206	6	0	Median	0.85706	1.02	4.4866	9	1	Median	1.1178	1.1332	20.922	10	1	Median	1.0639	1.1241	12.412	10	0	Median	15533000000	7361500000	8171200000	2058900000	778900000	1280000000	3025700000	1544600000	1481100000	5717000000	2661900000	3055100000	4731200000	2376200000	2355000000	809	791	770	4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633	6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063;6064;6065;6066;6067;6068;6069;6070;6071;6072;6073;6074;6075;6076;6077;6078;6079;6080;6081;6082;6083;6084;6085;6086;6087;6088;6089;6090;6091;6092;6093;6094;6095;6096;6097;6098;6099;6100;6101;6102;6103	6101			47	
AAYFGIYDTAK	1	Unmodified	1218.5921	0.59208927	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.41	6	4	4			4	3	4	4	6	8	6	9	60.329	54.241	2	3.3414E-18	49636	160511_QHF_FH_JSI10i_2	163.32	151.27			1.0814	1.0821	17.292	26	1	Median	1.2054	1.0016	16.202	6	0	Median	0.97353	1.1666	9.5651	7	0	Median	1.16	1.1026	6.5665	6	0	Median	0.94081	1.0227	22.413	7	1	Median	8028700000	3737900000	4290800000	1311900000	573690000	738190000	2478900000	1245100000	1233700000	2595100000	1140700000	1454400000	1642900000	778360000	864490000	810	826	771	4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651;4652;4653;4654;4655;4656;4657;4658;4659;4660;4661;4662	6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136;6137;6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164	6152			61	
AAYFGVYDTAK	1	Unmodified	1204.5764	0.57643921	1014;1013	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.2	3	4	4			3	4	6	6	6	8	9	7	56.671	50.054	2	1.8661E-19	43358	160511_QHF_FH_JSI11i_3	169.09	141.78			1.0122	1.0096	15.708	29	3	Median	1.0291	0.87542	5.3679	6	1	Median	0.87702	1.0267	14.823	7	1	Median	1.2051	1.1704	15.711	9	0	Median	0.84301	0.91701	11.439	7	1	Median	5899000000	2882400000	3016600000	1313500000	628700000	684830000	763630000	395870000	367760000	2229900000	980200000	1249700000	1591900000	877670000	714260000	811	1014;1013	772	4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686;4687;4688;4689;4690;4691;4692	6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210	6165			46	
AAYGGGGR	0	Unmodified	707.33509	0.33508672	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	2.9034	2.5131	2	0.011065	1363	160511_QHF_FH_JSI12i_2	54.525	48.138			0.80286	0.96218	10.527	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74318	0.86675	14.772	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76628	0.84734	NaN	1	0	Median	77046000	43403000	33643000	0	0	0	56347000	31744000	24604000	0	0	0	20698000	11659000	9039000	812	1002	773	4693;4694;4695	6211;6212	6211			2	
AAYIYIR	0	Unmodified	868.48069	0.48068833	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.495								4	3	2	1	2	2	49.243	39.199	2	1.7503E-11	21243	160513_QHF_FH_JSI9Kac_5	154.91	109.94			1.0402	1.068	6.1644	7	0	Median	1.2511	1.0664	2.2676	2	0	Median	0.89015	1.068	NaN	1	0	Median	1.0681	1.0341	7.4728	2	0	Median	0.93295	1.0044	11.066	2	0	Median	948840000	450410000	498430000	401720000	187030000	214690000	51547000	26921000	24626000	353050000	166520000	186530000	142510000	69941000	72573000	813	1687	774	4696;4697;4698;4699;4700;4701;4702	6213;6214;6215;6216;6217;6218;6219;6220;6221;6222;6223;6224	6214			12	
AAYKLVLIR	1	Acetyl (K);Acetyl (Protein N-term)	1129.6859	0.68593008	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	1	1	0	1			By MS/MS		14.5	0.5							1	1				2		92.932	82.445	2	0.00036272	41315	160513_QHF_FH_JSI11Kac_4	86.953	62.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	814	1144	775	4703;4704	6225;6226	6225	1001		2	
AAYLNMSEDPSHPSMALNTR	0	Oxidation (M)	2219.994	0.9939517	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	48.546	48.426	3	0.00056472	41384	160511_QHF_FH_JSI12i_3	49.224	44.955			1.1224	1.1167	19.761	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0157	0.97106	NaN	1	0	Median	1.2403	1.2841	NaN	1	0	Median	54045000	25572000	28473000	0	0	0	0	0	0	29863000	14211000	15652000	24182000	11360000	12821000	815	2578	776	4705;4706;4707;4708	6227;6228;6229;6230;6231;6232	6230		2019;2020	6	
AAYLNMSEDPSHPSMALNTR	0	Unmodified	2203.999	0.99903708	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	4	2	58.798	58.138	2;3	1.0359E-14	50453	160511_QHF_FH_JSI11i_2	150.98	141.42			1.0045	1.0056	4.3888	6	0	Median	1.1372	0.96785	NaN	1	0	Median	0.85074	1.021	NaN	1	0	Median	1.0439	1.0127	7.2269	2	0	Median	0.97495	1.0232	4.6055	2	0	Median	1250700000	618740000	631980000	158000000	66667000	91329000	148910000	83293000	65614000	505690000	246900000	258790000	438120000	221880000	216250000	816	2578	776	4709;4710;4711;4712;4713;4714;4715;4716	6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246	6242			14	
AAYLQETGK	1	Unmodified	979.49746	0.4974606	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	17.878	17.439	2	2.7523E-05	14996	160511_QHF_FH_JSI12i_1	103.56	69.767			1.021	1.0083	16.432	5	2	Median	1.229	1.0079	NaN	1	0	Median	0.9801	1.1436	29.842	2	2	Median	1.021	1.0094	NaN	1	0	Median	0.9602	1.0083	NaN	1	0	Median	575000000	245070000	329920000	123200000	51034000	72171000	218500000	106990000	111500000	111170000	44887000	66286000	122120000	42158000	79967000	817	805	777	4717;4718;4719;4720;4721	6247;6248;6249;6250;6251;6252	6249			6	
AAYLQETGKPLDETLK	2	Unmodified	1775.9305	0.93053004	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.59	7	9	7				1	3		6	5	8	8	53.386	50.972	2;3	1.0266E-43	43591	160511_QHF_FH_JSI12i_2	173.11	149.12			0.98642	0.97995	17.841	24	1	Median	0.99471	0.84255	18.706	5	0	Median	0.83122	1.0159	16.925	5	0	Median	1.0096	0.98703	16.298	7	1	Median	1.0154	1.0238	18.984	7	0	Median	7215300000	3614600000	3600700000	1171000000	532410000	638580000	1781100000	945000000	836060000	2515800000	1231000000	1284800000	1747400000	906160000	841260000	818	805	778	4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748	6253;6254;6255;6256;6257;6258;6259;6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297	6264			45	
AAYLQETGKPLDETLKK	3	Unmodified	1904.0255	0.025493054	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							2	3	3	6	45.008	44.448	2;3;4	5.4633E-39	37974	160511_QHF_FH_JSI12i_3	163.99	131.04			0.64423	0.69104	47.852	12	8	Median	0.68446	0.57243	62.283	2	1	Median	0.55556	0.62448	37.179	3	2	Median	0.97703	0.91988	20.753	3	1	Plateau	0.83181	0.85032	66.566	4	4	Median	6031000000	3322800000	2708200000	520780000	345110000	175680000	844220000	615980000	228230000	1325800000	644000000	681790000	3340200000	1717700000	1622500000	819	805	779	4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762	6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312	6312			14	
AAYLQWR	0	Acetyl (Protein N-term)	948.48175	0.48175096	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	74.615	74.06	2	0.0027719	67325	160511_QHF_FH_JSI10i_1	71.359	31.817			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	820	4668	780	4763;4764;4765	6313;6314;6315	6315			3	
AAYLSDPR	0	Unmodified	891.44503	0.4450311	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.285	20.782	2	0.00034698	18217	160511_QHF_FH_JSI12i_1	111.28	66.667			0.94694	0.98227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94694	0.98227	NaN	1	0	Median	531780000	260310000	271470000	0	0	0	0	0	0	0	0	0	531780000	260310000	271470000	821	2094	781	4766	6316	6316			1	
AAYNLVK	1	Unmodified	777.43849	0.43848916	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS		By MS/MS		10.3	5.91		1					1	1		1		2		29.583	22.968	2	0.012997	19808	160511_QHF_FH_JSI9i_2	71.949	48.93			1.0459	1.0316	19.189	3	1	Median	1.2231	1.0397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88448	0.87541	23.222	2	0	Median	NaN	NaN	NaN	0	0	Median	214190000	99803000	114390000	198440000	90996000	107450000	0	0	0	15753000	8806900	6945700	0	0	0	822	897	782	4767;4768;4769	6317;6318;6319	6318			3	
AAYNLVKR	1	Acetyl (K)	975.55016	0.55016488	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.371	30.827	2	0.013141	16971	160513_QHF_FH_JSI11Kac_6	98.418	69.995			0.31202	0.30608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31202	0.30608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11308000	8098900	3209500	0	0	0	0	0	0	11308000	8098900	3209500	0	0	0	823	897	783	4770	6320	6320	639		1	
AAYNLVR	0	Unmodified	805.44464	0.44463717	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	23.225	22.776	2	0.0039291	19638	160511_QHF_FH_JSI10i_2	101.33	66.436			1.0589	1.0118	13.922	5	3	Median	1.0589	0.9129	NaN	1	0	Median	0.79904	0.98726	NaN	1	0	Median	1.2256	1.2227	8.5378	2	2	Median	0.96642	1.0118	NaN	1	1	Median	2075000000	1047200000	1027800000	290790000	144510000	146270000	431410000	246510000	184900000	791830000	382730000	409090000	561010000	273450000	287560000	824	2487	784	4771;4772;4773;4774;4775;4776	6321;6322;6323;6324;6325;6326;6327	6324			7	
AAYNLVRDDGSAVIWVTFK	1	Unmodified	2124.1004	0.10038933	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	1		By MS/MS		By MS/MS	12.8	5.63			1						3		1		3	87.11	82.065	3	5.7723E-34	43777	160513_QHF_FH_JSI10Kac_6	166.29	150.35			0.95036	1.1198	51.706	3	2	Median	NaN	NaN	NaN	0	0	Median	0.95036	1.1198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72358	0.75471	65.645	2	2	Median	229210000	129050000	100160000	0	0	0	132590000	79127000	53464000	0	0	0	96618000	49921000	46697000	825	2487	785	4777;4778;4779;4780	6328;6329;6330;6331;6332	6332			5	
AAYNPGQAVPWNAVK	1	Unmodified	1584.8049	0.80487601	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	62.554	61.701	2;3	2.2339E-07	53642	160511_QHF_FH_JSI11i_2	135.86	121.18			0.60738	0.73534	36.192	7	4	Median	0.7079	0.60496	56.6	2	1	Median	0.60738	0.73534	NaN	1	0	Median	0.6059	0.59332	30.947	2	1	Median	0.6459	0.69379	56.554	2	2	Median	381910000	222850000	159060000	87504000	49539000	37965000	65355000	37225000	28130000	130950000	77600000	53349000	98103000	58491000	39612000	826	3499	786	4781;4782;4783;4784;4785;4786;4787	6333;6334;6335;6336;6337;6338	6338			6	
AAYNQVK	1	Unmodified	792.413	0.41300269	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	8.534	5.9597	2	0.0077513	3763	160513_QHF_FH_JSI12Kac_4	88.734	47.232			1.0209	0.94847	13.7	11	0	Median	1.1158	0.93832	2.7412	2	0	Median	0.74708	0.89796	16.326	3	0	Plateau	1.0209	0.98636	12.457	3	0	Median	0.71734	0.74949	20.466	3	0	Plateau	2949300000	1535600000	1413600000	678870000	304930000	373940000	861580000	503220000	358360000	715630000	353520000	362110000	693170000	373930000	319250000	827	1216	787	4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798	6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349;6350;6351	6350			13	
AAYNVTLLNFMDPQK	1	Unmodified	1723.8603	0.86034198	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	95.893	93.858	2;3	1.4393E-06	44562	160513_QHF_FH_JSI11Kac_6	157.52	131.58			1.1051	1.1294	8.7451	5	1	Median	1.4036	1.1876	NaN	1	0	Median	0.76058	0.94458	NaN	1	0	Median	1.1301	1.1038	3.3956	2	1	Median	1.0332	1.1294	NaN	1	0	Median	93387000	38390000	54997000	9846100	4814700	5031400	10582000	6633000	3948800	54705000	20539000	34166000	18254000	6403100	11851000	828	4578	788	4799;4800;4801;4802;4803	6352;6353;6354	6353			3	
AAYPDLENPPLLVTPSQQAK	1	Unmodified	2151.1212	0.12118435	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	80.48	80.053	2;3	7.1183E-14	71282	160511_QHF_FH_JSI9i_1	185.87	163.15			1.0074	1.018	4.9666	10	4	Median	1.2303	1.0043	2.4182	2	0	Median	0.84942	1.0138	1.0476	3	2	Median	1.0565	1.0357	5.4835	3	2	Plateau	1.0423	1.0901	6.3166	2	0	Median	1970800000	994850000	975960000	324630000	144790000	179840000	487040000	263870000	223170000	637740000	308290000	329450000	521400000	277900000	243500000	829	1818	789	4804;4805;4806;4807;4808;4809;4810;4811;4812;4813	6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374;6375;6376;6377;6378;6379;6380	6379			26	
AAYQVAALPK	1	Unmodified	1030.5811	0.58113065	1783	P52758	HRSP12	Ribonuclease UK114	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	2	2	44.176	40.238	2	1.6999E-07	35590	160511_QHF_FH_JSI9i_1	139.88	116.45			0.54508	0.51605	20.155	6	3	Median	0.66116	0.53933	NaN	1	0	Median	0.41942	0.49377	NaN	1	1	Median	0.62111	0.6125	32.424	2	1	Median	0.49121	0.52667	24.301	2	1	Median	889480000	581590000	307900000	131800000	74617000	57186000	255170000	187280000	67885000	288480000	187030000	101450000	214030000	132650000	81376000	830	1783	790	4814;4815;4816;4817;4818;4819	6381;6382;6383;6384;6385;6386	6385			6	
AAYSFYNVHTQTPLLDLMSDALVLAK	1	Unmodified	2880.4732	0.47316669	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	98.354	89.724	3	1.5219E-223	51161	160513_QHF_FH_JSI9Kac_6	311.01	292.74			0.90614	0.89965	4.0478	5	3	Median	1.0144	0.8821	NaN	1	0	Median	0.74631	0.89965	NaN	1	0	Median	0.93908	0.88001	NaN	1	1	Median	0.90569	0.95258	1.3999	2	2	Median	1032400000	564610000	467820000	288740000	140320000	148420000	290370000	158080000	132290000	199500000	125570000	73926000	253830000	140640000	113190000	831	1351	791	4820;4821;4822;4823;4824;4825	6387;6388;6389;6390;6391;6392;6393;6394	6390			8	
AAYSNFWCGMTSQGYYK	1	Unmodified	2032.8448	0.84476827	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	76.409	76.271	2;3	1.7797E-15	66193	160511_QHF_FH_JSI12i_3	159.08	151.54			1.3415	1.3198	17.44	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1927	1.1167	16.006	2	0	Median	1.403	1.4372	4.4329	2	0	Median	138690000	67082000	71609000	0	0	0	0	0	0	78066000	40802000	37264000	60624000	26279000	34345000	832	3593	792	4826;4827;4828;4829;4830	6395;6396;6397;6398;6399;6400;6401;6402;6403	6400			9	
AAYVLFYQR	0	Unmodified	1129.592	0.59202969	5626;1751;2350	Q9Y4E8;P51784;Q13107	USP15;USP11;USP4	Ubiquitin carboxyl-terminal hydrolase 15;Ubiquitin carboxyl-terminal hydrolase 11;Ubiquitin carboxyl-terminal hydrolase 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	4.86			2					4	5	3	3	3	2	67.629	59.457	2	9.1375E-56	29909	160513_QHF_FH_JSI10Kac_5	223.58	182.55			0.99062	1.0633	3.9597	10	0	Median	1.2858	1.0867	0.98994	3	0	Median	0.91568	1.0884	2.1464	3	0	Plateau	1.0529	1.0088	1.4412	2	0	Median	0.93648	1.0064	2.3181	2	0	Median	4911200000	2485800000	2425500000	711080000	314830000	396240000	1826600000	984520000	842100000	1500800000	770660000	730190000	872700000	415770000	456930000	833	5626;1751;2350	793	4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841	6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428	6418			25	
AAYWEEEPAEVRR	0	Unmodified	1604.7583	0.75831975	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.6	0.49		2	3							1		3	1	39.885	39.545	2;3	5.1166E-05	34656	160511_QHF_FH_JSI11i_3	79.886	67.053			1.2158	1.1418	16.117	4	0	Median	1.2888	1.1281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3077	1.2487	26.388	2	0	Median	1.1469	1.1557	NaN	1	0	Median	251230000	100200000	151030000	36895000	15922000	20973000	0	0	0	159330000	59200000	100130000	55008000	25080000	29929000	834	5755	794	4842;4843;4844;4845;4846	6429;6430;6431;6432;6433	6429			5	
ACADATLSQITNNIDPVGR	0	Unmodified	2014.9742	0.97420254	2030	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	3	1	77.222	76.795	2;3	1.1985E-93	69861	160511_QHF_FH_JSI11i_1	290.39	267.51			1.2061	1.1787	30.02	6	5	Median	1.6446	1.3393	NaN	1	1	Median	1.3381	1.5716	NaN	1	1	Median	1.0369	0.99751	16.634	3	3	Median	1.5862	1.6659	NaN	1	0	Median	227340000	104850000	122490000	13868000	4129900	9737700	42618000	13812000	28806000	140530000	74307000	66218000	30326000	12598000	17729000	835	2030	795	4847;4848;4849;4850;4851;4852	6434;6435;6436;6437;6438;6439;6440;6441	6435			8	
ACAELHQNVNVK	1	Unmodified	1381.6772	0.67723266	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.55	4.94		7	2					2			2	5	4	20.047	17.37	2;3	1.8367E-14	14389	160511_QHF_FH_JSI11i_2	137.98	119.66			1.0711	1.1399	32.921	8	4	Median	NaN	NaN	NaN	0	0	Median	0.94279	1.1473	44.471	2	2	Median	0.88222	0.89498	43.772	3	1	Median	1.0657	1.1196	14.914	3	1	Plateau	480500000	226000000	254490000	0	0	0	115890000	56905000	58986000	186810000	87628000	99185000	177790000	81471000	96324000	836	4212	796	4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863	6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452	6448			10	
ACANPAAGSVILLENLR	0	Unmodified	1767.9302	0.93015288	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.64	9	8	7					4		7	8	7	6	87.349	85.262	2;3	6.1022E-137	75629	160511_QHF_FH_JSI12i_3	284.04	269.06			1.0566	1.1333	27.355	26	2	Median	1.3126	1.1138	22.995	5	2	Median	0.96166	1.1601	36.088	8	0	Median	0.92116	0.92123	4.1169	7	0	Median	1.4161	1.4746	5.7074	6	0	Median	5397800000	2609300000	2788500000	618530000	279510000	339030000	1285100000	649920000	635210000	2014700000	1045900000	968820000	1479400000	633980000	845460000	837	775	797	4864;4865;4866;4867;4868;4869;4870;4871;4872;4873;4874;4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891	6453;6454;6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505	6505			52	
ACARPLISVYSEK	1	Acetyl (Protein N-term)	1534.7814	0.78136338	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.764	1	1	4								1	2	3	59.507	58.879	2	1.9727E-06	52243	160511_QHF_FH_JSI11i_3	128.85	94.886			5.1843	5.8524	202.26	4	4	Median	NaN	NaN	NaN	0	0	Median	2.1601	2.6265	NaN	1	1	Median	0.35098	0.3377	NaN	1	1	Median	19.457	21.198	68.711	2	2	Median	840140000	219910000	620230000	0	0	0	82539000	31820000	50719000	401360000	173410000	227950000	356240000	14679000	341570000	838	1457	798	4892;4893;4894;4895;4896;4897	6506;6507;6508;6509;6510;6511;6512	6507			7	
ACEFAGFQCQIQFGPHNEQK	1	Unmodified	2395.0474	0.047384258	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.766	65.619	3	4.3023E-10	58394	160511_QHF_FH_JSI11i_3	113.47	98.546			0.96279	0.93415	52.113	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68258	0.64622	NaN	1	0	Median	1.358	1.3504	NaN	1	1	Median	55528000	24998000	30530000	0	0	0	0	0	0	25485000	12487000	12998000	30042000	12510000	17532000	839	5616	799	4898;4899	6513;6514;6515	6514			3	
ACFQHVK	1	Unmodified	888.42761	0.4276069	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.8458	7.9435	2	0.0112	5415	160511_QHF_FH_JSI12i_3	62.714	45.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	840	3914	800	4900	6516	6516			1	
ACFTMDPK	1	Unmodified	968.40957	0.40957357	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	30.307	30.079	2	0.016485	27187	160511_QHF_FH_JSI12i_1	47.916	30.53			2.1015	2.0233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1015	2.0233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61600000	20344000	41257000	0	0	0	0	0	0	61600000	20344000	41257000	0	0	0	841	1283	801	4901;4902	6517;6518	6518			2	
ACGDSTLTQITAGLDPVGR	0	Unmodified	1930.9418	0.94183978	2032	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		81.822	81.369	2	2.8888E-52	74201	160511_QHF_FH_JSI11i_1	256.77	231.43			1.053	1.1684	28.085	3	2	Median	1.053	0.88402	NaN	1	0	Median	0.99643	1.1684	NaN	1	1	Median	1.5843	1.5503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	175280000	77616000	97667000	32963000	16582000	16381000	58176000	30258000	27917000	84144000	30776000	53368000	0	0	0	842	2032	802	4903;4904;4905	6519;6520;6521;6522	6519			4	
ACGLIIFR	0	Unmodified	948.52151	0.52150728	1713	P50583	NUDT2	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	63.971	62.47	2	0.0033838	52370	160511_QHF_FH_JSI10i_3	72.618	58.632			1.4075	1.1386	NaN	1	0	Median	1.4075	1.1386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25397000	10428000	14970000	25397000	10428000	14970000	0	0	0	0	0	0	0	0	0	843	1713	803	4906;4907;4908	6523;6524;6525	6523			3	
ACGLNFADLMAR	0	Unmodified	1337.622	0.62202597	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	79.991	79.42	2	1.1315E-07	69841	160511_QHF_FH_JSI11i_2	136.52	113.09			1.1266	1.3316	23.335	6	1	Median	1.6144	1.4116	NaN	1	0	Median	1.014	1.2562	NaN	1	0	Median	0.92161	0.90038	7.1306	2	0	Median	1.353	1.4523	2.9867	2	1	Median	669910000	320920000	348980000	27338000	9365500	17973000	101920000	48518000	53397000	322280000	163160000	159130000	218370000	99886000	118490000	844	4279	804	4909;4910;4911;4912;4913;4914	6526;6527;6528;6529;6530;6531	6529			6	
ACGLVASNLNLK	1	Acetyl (Protein N-term)	1300.6809	0.68092105	926	P09382	LGALS1	Galectin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.904	75.421	2	3.3781E-23	68488	160511_QHF_FH_JSI11i_1	118.18	57.588			0.93266	0.92101	15.91	4	0	Median	1.0257	0.84653	NaN	1	0	Median	0.84805	1.002	NaN	1	0	Median	0.78794	0.77579	NaN	1	0	Median	1.0533	1.1023	NaN	1	0	Median	757610000	399070000	358540000	112700000	58345000	54355000	216260000	115170000	101090000	193800000	115740000	78058000	234850000	109810000	125040000	845	926	805	4915;4916;4917;4918	6532;6533;6534;6535;6536;6537;6538;6539	6533			8	
ACGLVASNLNLKPGECLR	1	Acetyl (Protein N-term)	2013.0136	0.013564934	926	P09382	LGALS1	Galectin-1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.764	7	7	4							2	4	6	6	77.5	76.999	2;3	2.9315E-66	70064	160511_QHF_FH_JSI11i_1	131.32	110.48			1.0979	1.1538	69.958	16	2	Median	1.281	1.0822	NaN	1	0	Median	0.95995	1.1538	87.5	4	1	Median	0.95932	0.93999	16.845	5	0	Median	1.3143	1.4111	78.733	6	1	Median	1434900000	654430000	780460000	53860000	24895000	28965000	396630000	176430000	220200000	594500000	304320000	290180000	389900000	148780000	241110000	846	926	806	4919;4920;4921;4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936	6540;6541;6542;6543;6544;6545;6546;6547;6548;6549;6550;6551;6552;6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564	6543			23	
ACGNFGIPCELR	0	Unmodified	1392.6278	0.62783962	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	6.03	4	4						3		1	4	3	3	61.081	57.642	2	1.3565E-07	49822	160511_QHF_FH_JSI11i_2	135.55	126.59			0.93806	0.92952	20.962	11	3	Median	1.1267	0.9744	NaN	1	0	Median	0.88177	1.0477	21.332	4	2	Median	0.82571	0.84513	6.961	3	0	Median	1.2031	1.3335	27.212	3	1	Median	1090100000	555480000	534610000	79231000	42028000	37204000	325980000	159920000	166060000	390490000	208190000	182300000	294380000	145340000	149050000	847	1206	807	4937;4938;4939;4940;4941;4942;4943;4944;4945;4946;4947	6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576	6573			11	
ACIDSNEDGDLSK	1	Unmodified	1422.5933	0.59328784	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.979	22.83	2	0.00054488	19900	160511_QHF_FH_JSI11i_1	88.681	86.872			1.549	1.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.549	1.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23280000	10001000	13279000	0	0	0	0	0	0	23280000	10001000	13279000	0	0	0	848	1316	808	4948	6577	6577			1	
ACINTLQFLYSR	0	Unmodified	1484.7446	0.74458394	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.774	78.519	2	0.01991	68189	160511_QHF_FH_JSI12i_3	43.77	30.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	849	3777	809	4949	6578	6578			1	
ACIPYLK	1	Unmodified	863.45751	0.45751004	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.672	46.261	2	0.027452	41806	160511_QHF_FH_JSI11i_1	56.026	36.18			0.92306	0.88769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92306	0.88769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47917000	22591000	25326000	0	0	0	0	0	0	47917000	22591000	25326000	0	0	0	850	3175	810	4950	6579	6579			1	
ACLDTAVENMPSLK	1	Unmodified	1547.7324	0.73236428	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	2	3	1	65.156	64.516	2	1.6554E-44	58392	160511_QHF_FH_JSI10i_1	251.34	229.25			0.79418	0.87273	24.991	6	6	Median	0.99183	0.82179	NaN	1	1	Median	0.79418	0.94441	2.6573	2	2	Median	0.6064	0.57772	7.4599	2	2	Median	0.91199	0.9764	NaN	1	1	Median	989170000	545890000	443270000	141540000	62488000	79057000	237310000	135150000	102160000	326770000	209860000	116900000	283550000	138390000	145150000	851	1650	811	4951;4952;4953;4954;4955;4956;4957	6580;6581;6582;6583;6584;6585;6586	6583			7	
ACLENLGLK	1	Unmodified	1016.5325	0.5324659	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	47.662	46.798	2	0.00019834	42124	160511_QHF_FH_JSI10i_1	102.51	72.259			0.3045	0.41825	46.942	4	4	Linear	1.2114	1.0219	NaN	1	1	Median	0.37755	0.4511	NaN	1	1	Median	0.38562	0.3791	NaN	1	1	Median	0.34693	0.3878	NaN	1	1	Median	906580000	626910000	279660000	30556000	15267000	15289000	224930000	148790000	76141000	223980000	152080000	71900000	427120000	310790000	116330000	852	1464	812	4958;4959;4960;4961	6587;6588;6589;6590	6589			4	
ACLISLGYDVENDRQGEAEFNR	0	Unmodified	2555.1711	0.17106445	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		71.302	71.302	3	4.7123E-10	63600	160511_QHF_FH_JSI11i_3	111.18	99.051			1.4091	1.277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4091	1.277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34782000	10621000	24161000	0	0	0	0	0	0	34782000	10621000	24161000	0	0	0	853	361	813	4962	6591	6591			1	
ACLQPSQDPQMR	0	Unmodified	1429.6442	0.64421797	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.995	25.456	2	0.0052649	22638	160511_QHF_FH_JSI12i_1	54.608	37.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	854	3382	814	4963	6592	6592			1	
ACLSGHHSASSTSKPFK	2	Acetyl (K)	1842.8683	0.86828091	5401	Q9ULK2	ATXN7L1	Ataxin-7-like protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		3	2	1	28.92	20.348	3	0.011565	10981	160513_QHF_FH_JSI12Kac_6	40.962	33.554			0.80469	0.91103	45.506	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55553	0.66037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1656	1.2568	NaN	1	0	Median	24247000	12182000	12064000	0	0	0	13334000	6209400	7124300	5079100	3439400	1639800	5833800	2533400	3300400	855	5401	815	4964;4965;4966;4967;4968;4969	6593;6594;6595;6596;6597	6595	3395		5	
ACMLTTATAHDGDVNVISWSR	0	Unmodified	2304.0627	0.062699971	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	69.943	69.303	3	2.4595E-15	61546	160511_QHF_FH_JSI10i_2	130.25	125.34			1.1633	1.231	12.172	4	1	Median	NaN	NaN	NaN	0	0	Median	0.9826	1.1811	16.835	2	0	Median	1.1996	1.139	NaN	1	1	Median	1.3464	1.3456	NaN	1	0	Median	161140000	74012000	87130000	0	0	0	46853000	23720000	23134000	60932000	29321000	31611000	53356000	20971000	32385000	856	4350	816	4970;4971;4972;4973	6598;6599;6600;6601	6600			4	
ACNQLGQFLQHR	0	Unmodified	1470.715	0.71501515	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0		By MS/MS			3	0			1								1			46.972	45.41	3	0.034174	38023	160511_QHF_FH_JSI10i_3	42.629	35.264			1.9891	2.3333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9891	2.3333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25704000	12738000	12966000	0	0	0	25704000	12738000	12966000	0	0	0	0	0	0	857	726;635	817	4974	6602	6602			0	
ACPLDQAIGLLVAIFHK	1	Acetyl (Protein N-term)	1907.0339	0.033889671	852	P06703	S100A6	Protein S100-A6	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.76		8	7	3	4	1			6	4	11	7	7	105.53	102.61	2;3	8.7514E-103	58659	160513_QHF_FH_JSI10Kac_6	275.63	257.82			0.92878	0.97191	121.84	22	4	Median	1.1584	1.0197	150.5	4	1	Median	0.79403	0.91923	140.6	9	2	Median	0.93836	0.92589	4.4812	4	0	Median	1.2983	1.3269	135.59	5	1	Median	16309000000	14826000000	1482500000	2318300000	2141800000	176510000	9819000000	9195700000	623340000	901930000	458950000	442980000	3269300000	3029600000	239690000	858	852	818	4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003	6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630;6631;6632;6633;6634;6635;6636;6637;6638;6639;6640;6641;6642;6643;6644	6643			42	
ACPLDQAIGLLVAIFHK	1	Unmodified	1865.0233	0.023324985	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	2	1	102.33	97.473	3	1.276E-83	52803	160513_QHF_FH_JSI11Kac_6	218.98	193.93			0.93775	1.1095	25.172	5	0	Median	1.4068	1.1821	NaN	1	0	Median	0.93775	1.1095	NaN	1	0	Median	0.75394	0.72352	7.0584	2	0	Median	1.0669	1.1239	NaN	1	0	Median	1176000000	611790000	564170000	169590000	62994000	106600000	386970000	191090000	195880000	605890000	350890000	255000000	13515000	6814000	6701200	859	852	818	5004;5005;5006;5007;5008	6645;6646;6647;6648;6649;6650;6651	6645			7	
ACPLDQAIGLLVAIFHKYSGR	1	Acetyl (Protein N-term)	2370.2518	0.25182137	852	P06703	S100A6	Protein S100-A6	yes	yes	0	1	0	1		By MS/MS			16	0									1		1			104.11	98.394	3	2.0794E-11	58225	160513_QHF_FH_JSI10Kac_6	92.336	83.946			0.84357	0.97486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84357	0.97486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	190500000	109100000	81408000	0	0	0	190500000	109100000	81408000	0	0	0	0	0	0	860	852	819	5009	6652	6652			1	
ACPLEKALDVMVSTFHK	2	Acetyl (K);Acetyl (Protein N-term)	2029.0013	0.0012689135	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	101.56	92.788	2;3	6.6106E-84	53351	160513_QHF_FH_JSI9Kac_6	151.7	122.01			1.2325	1.2604	9.4864	4	0	Median	1.2567	1.0573	NaN	1	0	Median	1.0629	1.2446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2325	1.2886	1.3437	2	0	Median	458140000	208090000	250050000	128310000	57821000	70491000	118040000	57042000	60995000	0	0	0	211790000	93227000	118560000	861	1278	820	5010;5011;5012;5013;5014;5015	6653;6654;6655;6656;6657;6658;6659;6660	6655	1186;1187		8	
ACPLEKALDVMVSTFHK	2	Acetyl (Protein N-term)	1986.9907	0.99070423	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	1	0	1				By MS/MS	3	0			1										1	102.48	102.49	3	2.4713E-08	89263	160511_QHF_FH_JSI12i_3	70.942	55.787			1.3891	1.3862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3891	1.3862	NaN	1	0	Median	151380000	58598000	92778000	0	0	0	0	0	0	0	0	0	151380000	58598000	92778000	862	1278	820	5016	6661	6661			1	
ACPRPEGLNFQDLK	1	Unmodified	1643.809	0.80897511	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.198	50.963	3	0.019844	43651	160511_QHF_FH_JSI12i_3	43.03	29.626			0.41638	0.41667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41638	0.41667	NaN	1	1	Median	91733000	60139000	31594000	0	0	0	0	0	0	0	0	0	91733000	60139000	31594000	863	1086	821	5017	6662	6662			1	
ACQIFVR	0	Unmodified	892.45891	0.45890703	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.14	0.833	2	2	3								3	3	1	27.972	27.661	2	0.0016993	24327	160511_QHF_FH_JSI10i_2	117.7	79.497			0.88852	0.90663	19.435	6	0	Median	NaN	NaN	NaN	0	0	Median	0.85407	1.0227	22.044	2	0	Median	0.85058	0.82169	8.3077	3	0	Median	1.2568	1.2688	NaN	1	0	Median	2236600000	1091300000	1145300000	0	0	0	402280000	224930000	177350000	1061200000	542060000	519130000	773100000	324290000	448810000	864	1765	822	5018;5019;5020;5021;5022;5023;5024	6663;6664;6665;6666;6667	6666			5	
ACQSIYPLHDVFVR	0	Unmodified	1703.8454	0.84536062	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	1	1	5	4	67.108	65.708	2;3	1.6391E-21	58294	160511_QHF_FH_JSI11i_3	208.46	193.77			0.94093	0.8954	22.171	11	1	Median	0.94298	0.81	NaN	1	0	Median	0.72002	0.8954	NaN	1	1	Median	0.79708	0.7414	12.589	5	0	Median	1.056	1.1157	11.154	4	0	Median	2516300000	1243900000	1272400000	109650000	47887000	61759000	217740000	98916000	118820000	1284500000	702530000	581970000	904440000	394570000	509870000	865	1948	823	5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035	6668;6669;6670;6671;6672;6673;6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684	6671			17	
ACQSIYPLHDVFVRK	1	Unmodified	1831.9403	0.94032364	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	2	3	2	2	58.264	56.357	2;3;4	1.9427E-07	47300	160511_QHF_FH_JSI10i_3	120.7	110.07			0.76089	0.87683	71.509	8	3	Median	1.2818	1.0436	0.050732	2	0	Median	0.8437	0.99057	66.791	3	1	Plateau	0.46347	0.44318	NaN	1	1	Median	0.3524	0.3706	122.89	2	1	Median	1430400000	961840000	468590000	270570000	119430000	151140000	350040000	206530000	143510000	439000000	314270000	124730000	370810000	321610000	49207000	866	1948	824	5036;5037;5038;5039;5040;5041;5042;5043;5044	6685;6686;6687;6688;6689;6690;6691;6692;6693;6694;6695;6696;6697	6689			13	
ACTILLR	0	Unmodified	845.47931	0.47930812	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	33.887	33.832	2	0.0081881	29445	160511_QHF_FH_JSI11i_3	86.866	46.18			0.96284	0.9556	29.345	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80978	0.77654	NaN	1	1	Median	1.1448	1.176	NaN	1	1	Median	695790000	362930000	332860000	0	0	0	0	0	0	308720000	172180000	136540000	387070000	190750000	196320000	867	1655	825	5045;5046	6698;6699	6698			2	
ACTQLVDNLVEHILK	1	Unmodified	1751.924	0.92400487	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.16	100.17	3	3.573E-05	86732	160511_QHF_FH_JSI12i_3	94.487	82.796			1.3282	1.2971	31.585	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.0375	NaN	1	0	Median	1.6088	1.6217	NaN	1	0	Median	63602000	27758000	35844000	0	0	0	0	0	0	17381000	8239000	9142000	46221000	19519000	26702000	868	3063	826	5047;5048	6700;6701;6702;6703	6703			4	
ACTTEEDQEK	1	Unmodified	1209.4819	0.48194647	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.33	5.19	1				2							1	2	5.5664	0.6471	2	6.862E-11	2948	160511_QHF_FH_JSI12i_1	144.77	135.56			1.1988	1.262	16.449	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.017	0.97201	NaN	1	0	Median	1.2094	1.2893	3.0286	2	0	Median	77605000	34910000	42695000	0	0	0	0	0	0	2021200	1055200	965960	75584000	33855000	41729000	869	1693	827	5049;5050;5051	6704;6705;6706;6707;6708	6706			5	
ACVGNAYHK	1	Unmodified	1018.4654	0.46544897	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.1955	7.2932	3	0.00011332	4837	160511_QHF_FH_JSI12i_3	79.906	71.981			0.85187	0.85066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85187	0.85066	NaN	1	0	Median	104560000	50519000	54040000	0	0	0	0	0	0	0	0	0	104560000	50519000	54040000	870	5382	828	5052	6709	6709			1	
ACVMMQGR	0	Unmodified	951.40886	0.40886207	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							2	3	4	2	16.322	15.858	2	8.553E-06	12765	160511_QHF_FH_JSI11i_2	158.53	105.85			0.92202	1.098	40.927	11	3	Median	1.0832	0.9147	45.095	2	0	Median	0.92202	1.098	37.468	3	1	Median	0.90877	0.91483	55.619	4	2	Median	1.1903	1.2607	28.238	2	0	Median	793110000	385600000	407510000	92648000	42629000	50019000	190610000	99039000	91574000	310380000	160810000	149570000	199470000	83120000	116350000	871	771	829	5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063	6710;6711;6712;6713;6714;6715;6716;6717;6718	6716			8	
ACVSMLGVPVDPDTLHATLR	0	Unmodified	2151.0816	0.0816445	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.998	87.045	3	6.2542E-05	75134	160511_QHF_FH_JSI12i_2	65.022	55.273			2.2028	2.5145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2028	2.5145	NaN	1	1	Median	10120000	3319000	6800700	0	0	0	0	0	0	0	0	0	10120000	3319000	6800700	872	3290	830	5064	6719;6720	6720			2	
ACVVHGSDLK	1	Unmodified	1084.5335	0.53352853	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	no	no	0	0	0	0				By MS/MS	2	0		1											1	13.224	12.433	2	0.004236	9828	160511_QHF_FH_JSI12i_2	66.621	54.414			0.083276	0.092455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.083276	0.092455	NaN	1	1	Median	207310000	186220000	21086000	0	0	0	0	0	0	0	0	0	207310000	186220000	21086000	873	821	831	5065	6721	6721			1	
ACWVLHYFCEVK	1	Unmodified	1610.7374	0.73739007	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	2	3	78.88	70.517	2;3	1.7725E-32	37032	160513_QHF_FH_JSI12Kac_6	188.06	170.32			1.1309	1.1495	38.55	8	0	Median	0.85817	0.74617	6.533	2	0	Median	0.96074	1.1508	17.697	2	0	Median	1.215	1.1495	5.9376	2	0	Median	1.8047	1.9007	35.286	2	0	Median	1731300000	724610000	1006700000	364630000	210820000	153820000	612330000	244050000	368280000	450800000	176650000	274140000	303530000	93091000	210440000	874	686	832	5066;5067;5068;5069;5070;5071;5072;5073;5074	6722;6723;6724;6725;6726;6727;6728;6729;6730;6731;6732;6733;6734;6735	6731			14	
ACYGVLR	0	Unmodified	837.41671	0.41670786	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	24.593	23.639	2	0.0073272	19672	160511_QHF_FH_JSI12i_2	87.839	59.311			0.81779	0.82082	79.561	5	2	Median	0.31044	0.26539	NaN	1	0	Median	0.42754	0.50507	98.226	2	1	Median	0.81779	0.82082	NaN	1	1	Median	1.2867	1.4217	NaN	1	0	Median	954580000	571180000	383390000	88128000	60850000	27278000	338590000	234250000	104340000	349910000	193070000	156840000	177950000	83008000	94940000	875	1227	833	5075;5076;5077;5078;5079	6736;6737;6738;6739;6740;6741	6737			6	
ACYLSINPQK	1	Unmodified	1192.591	0.59104341	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0			By MS/MS		2	0		1										1		42.008	41.534	2	0.00018758	35621	160511_QHF_FH_JSI11i_2	82.279	64.893			0.59877	0.59093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59877	0.59093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80934000	57578000	23356000	0	0	0	0	0	0	80934000	57578000	23356000	0	0	0	876	1524;1941	834	5080	6742	6742			1	
ADAAPQLGK	1	Acetyl (Protein N-term)	911.47125	0.47124585	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	32.644	32.068	2	0.0072356	28913	160511_QHF_FH_JSI12i_1	49.097	37.192			4.8022	4.9189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8022	4.9189	NaN	1	1	Median	33632000	5574500	28057000	0	0	0	0	0	0	0	0	0	33632000	5574500	28057000	877	4003	835	5081	6743	6743			1	
ADAAPQLGKR	1	Acetyl (K);Acetyl (Protein N-term)	1109.5829	0.58292157	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						1	1	2	47.849	38.63	2	0.001154	15653	160513_QHF_FH_JSI11Kac_1	69.825	61.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	878	4003	836	5082;5083;5084;5085	6744;6745;6746;6747	6745	3026		4	
ADAASQVLLGSGLTILSQPLMYVK	1	Acetyl (Protein N-term)	2516.356	0.35601167	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.618	9	5	1							2	4	4	5	104.1	104.02	2;3	1.1327E-216	94703	160511_QHF_FH_JSI11i_1	203.85	192.58			1.1315	1.0963	5.8237	7	0	Median	1.2812	1.0441	4.9955	2	0	Median	0.99842	1.1697	4.2604	2	0	Median	1.1598	1.1299	4.2697	2	0	Median	1.009	1.0827	NaN	1	0	Median	1560000000	773170000	786840000	170600000	76486000	94111000	506080000	261280000	244810000	302210000	138740000	163460000	581130000	296670000	284460000	879	5717	837	5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100	6748;6749;6750;6751;6752;6753;6754;6755;6756;6757;6758;6759;6760;6761;6762;6763;6764	6748			17	
ADAASQVLLGSGLTILSQPLMYVK	1	Acetyl (Protein N-term);Oxidation (M)	2532.3509	0.35092629	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	1	1	0		By matching	By matching	By MS/MS	1.67	0.943	2		1								1	1	1	103.74	103.71	3	0.0019238	90492	160511_QHF_FH_JSI12i_3	37.228	29.04			1.1499	1.2319	6.9453	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0047	1.1729	NaN	1	0	Median	1.3162	1.2939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107520000	57473000	50049000	0	0	0	56803000	30743000	26060000	44448000	20459000	23989000	6271100	6271100	0	880	5717	837	5101;5102;5103	6765	6765		2739	1	
ADAASSLTVDVTPPTAK	1	Unmodified	1642.8414	0.84138068	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	57.527	56.869	3	0.00044357	51711	160511_QHF_FH_JSI12i_1	63.614	51.449			1.7514	1.8471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7514	1.8471	NaN	1	1	Median	35897000	12082000	23816000	0	0	0	0	0	0	0	0	0	35897000	12082000	23816000	881	4793	838	5104	6766	6766			1	
ADAEEEAATRIPA	0	Unmodified	1342.6365	0.63647328	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		37.382	37.063	2	0.00053974	33330	160511_QHF_FH_JSI11i_1	99.439	86.649			1.8281	1.9845	191.32	2	1	Median	NaN	NaN	NaN	0	0	Median	6.298	7.6769	NaN	1	1	Median	0.53066	0.51301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	330440000	59917000	270530000	0	0	0	284460000	26057000	258400000	45986000	33861000	12125000	0	0	0	882	2400	839	5105;5106	6767;6768	6767			2	
ADAEGESDLENSRK	1	Unmodified	1519.675	0.67504363	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	11.93	11.509	2;3	6.8344E-81	9049	160511_QHF_FH_JSI9i_1	243.53	216.85			1.0099	1.1115	9.4897	9	1	Median	1.2162	0.99929	3.6011	2	0	Median	0.97314	1.1144	3.9924	3	1	Plateau	1.1958	1.167	5.3578	2	0	Median	0.92041	0.95542	5.4198	2	0	Median	2381200000	1146100000	1235100000	477110000	216420000	260690000	643130000	334750000	308380000	598890000	308990000	289900000	662040000	285920000	376120000	883	5616	840	5107;5108;5109;5110;5111;5112;5113;5114;5115	6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779;6780;6781;6782;6783;6784;6785;6786	6785			18	
ADAESEPVAQK	1	Unmodified	1143.5408	0.54078198	663	O95243	MBD4	Methyl-CpG-binding domain protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.332	10.096	2	0.00039441	7886	160511_QHF_FH_JSI10i_1	81.338	51.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	884	663	841	5116	6787	6787			1	
ADAETLRK	1	Unmodified	902.48214	0.48214489	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.3	5	8	6				5	8	1	5	9	11	8	8.1545	4.0795	2;3	0.00012366	4863	160511_QHF_FH_JSI11i_3	114.5	42.359			0.81063	0.8639	35.354	32	5	Median	0.99033	0.82	23.337	5	1	Median	0.78559	0.91916	59.337	9	2	Median	0.77952	0.78764	23.267	10	1	Median	0.83556	0.91824	20.121	8	1	Median	15531000000	8470500000	7060900000	1826700000	902470000	924220000	3319400000	2047000000	1272400000	5101800000	2516700000	2585000000	5283700000	3004400000	2279300000	885	916	842	5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149	6788;6789;6790;6791;6792;6793;6794;6795;6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808;6809;6810;6811;6812;6813;6814;6815;6816;6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832;6833	6791			46	
ADAEVIILPK	1	Acetyl (Protein N-term)	1109.6332	0.6332258	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.24	80.77	2	8.3687E-08	73510	160511_QHF_FH_JSI11i_1	50.607	35.831			1.0242	1.0396	19.717	4	0	Median	0.97726	0.80941	NaN	1	0	Median	0.81131	0.9661	NaN	1	0	Median	1.3016	1.2812	NaN	1	0	Median	1.0733	1.1186	NaN	1	0	Median	130860000	67784000	63077000	27229000	14712000	12517000	36939000	23340000	13599000	28121000	13146000	14976000	38572000	16586000	21985000	886	453	843	5150;5151;5152;5153	6834;6835;6836;6837;6838	6834			5	
ADAEYYAAHK	1	Unmodified	1137.5091	0.50908792	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		3								1			2	13.901	13.145	2;3	0.0061103	10451	160511_QHF_FH_JSI12i_2	54.982	41.628			1.3534	1.313	1.3213	2	0	Median	1.4932	1.3008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2267	1.3254	NaN	1	0	Median	71467000	28260000	43208000	31660000	11959000	19701000	0	0	0	0	0	0	39808000	16301000	23507000	887	533	844	5154;5155;5156	6839;6840	6839			1	
ADAGHAGVSANMMKK	2	Acetyl (K)	1528.7126	0.71263189	5703	Q9Y657	SPIN1	Spindlin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				2	1	1	37.033	27.421	3	0.00032159	16982	160513_QHF_FH_JSI11Kac_4	94.532	88.954			0.2243	0.26512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2243	0.26512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5987100	2970300	3016800	0	0	0	5987100	2970300	3016800	0	0	0	0	0	0	888	5703	845	5157;5158;5159;5160	6841;6842;6843;6844	6843	3532		4	
ADAGIRR	0	Acetyl (Protein N-term)	799.43005	0.43004974	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	2	3	10.547	9.1619	2	0.0015082	7692	160511_QHF_FH_JSI10i_2	85.359	63.432			0.2549	0.25823	130.05	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10632	0.10295	NaN	1	0	Median	0.61114	0.64774	NaN	1	0	Median	538770000	421530000	117240000	0	0	0	0	0	0	210120000	193850000	16276000	328650000	227690000	100960000	889	2586	846	5161;5162;5163;5164;5165;5166;5167;5168	6845;6846;6847;6848;6849;6850;6851;6852	6852			8	
ADAGKDGNNPAK	2	Acetyl (K)	1198.5578	0.55782903	142	O00479	HMGN4	High mobility group nucleosome-binding domain-containing protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	9.4857	2.2297	2	4.6056E-06	3277	160513_QHF_FH_JSI12Kac_2	104.22	80.793			0.83602	0.88607	12.969	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77745	0.92976	NaN	1	0	Median	1.1658	1.1318	NaN	1	0	Median	0.83602	0.88607	NaN	1	0	Median	14204000	7252300	6951900	0	0	0	4952100	2390400	2561700	2733600	1360400	1373200	6518400	3501500	3016900	890	142	847	5169;5170;5171	6853;6854;6855;6856;6857;6858	6858	85		6	
ADAGKEGNNPAENGDAK	2	Acetyl (K)	1698.7445	0.74452018	833	P05204	HMGN2	Non-histone chromosomal protein HMG-17	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.7	0.471				3	6						2	3	4	18.127	10.945	2;3	0.00024746	6277	160513_QHF_FH_JSI10Kac_2	83.047	77.563			0.982	0.98077	23.575	8	0	Median	NaN	NaN	NaN	0	0	Median	0.98926	1.1403	37.132	2	0	Median	1.3167	1.2396	30.525	2	0	Median	0.8757	0.92592	13.054	4	0	Median	47449000	22021000	25429000	0	0	0	7675800	3686400	3989400	10897000	5207800	5689100	28877000	13127000	15750000	891	833	848	5172;5173;5174;5175;5176;5177;5178;5179;5180	6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869	6862	484		10	
ADAHLGSSSVALPK	1	Unmodified	1351.7096	0.70957864	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.14	1	7						1		2	2	3	2	38.916	36.829	2;3	0.00043407	31422	160511_QHF_FH_JSI11i_2	59.864	56.736			1.2153	1.1421	27.154	8	1	Median	1.6081	1.3572	21.704	2	0	Median	0.89458	1.1106	56.612	2	1	Median	1.0688	1.0473	6.3014	2	0	Median	1.1785	1.3113	22.241	2	0	Median	764250000	324180000	440070000	121650000	45271000	76380000	188570000	86886000	101690000	270820000	113030000	157800000	183210000	78998000	104210000	892	3660	849	5181;5182;5183;5184;5185;5186;5187;5188;5189	6870;6871;6872;6873;6874;6875	6872			6	
ADAKVMK	2	Acetyl (K);Oxidation (M)	819.41604	0.41603916	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	8.5598	1.4541	2	0.042543	3411	160513_QHF_FH_JSI12Kac_3	48.561	28.006			0.8466	0.91171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8466	0.91171	NaN	1	0	Median	6467400	3621000	2846400	0	0	0	0	0	0	0	0	0	6467400	3621000	2846400	893	998	850	5190	6876	6876			1	
ADAKVMK	2	Acetyl (K)	803.42112	0.42112454	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		18.002	10.591	2	0.048639	7375	160513_QHF_FH_JSI10Kac_3	60.682	23.036			0.84003	0.89893	1.9021	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76683	0.88692	NaN	1	0	Median	0.92021	0.9111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12012000	6305700	5706600	0	0	0	6797600	3581500	3216100	5214700	2724200	2490500	0	0	0	894	998	850	5191;5192	6877	6877			1	
ADALQAGASQFETSAAK	1	Unmodified	1664.8006	0.8005785	2717;2047	P63027;Q15836	VAMP2;VAMP3	Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 3	no	no	0	0	0	0				By MS/MS	1	0	1												1	49.583	48.917	2	0.000127	44432	160511_QHF_FH_JSI12i_1	88.561	69.816			1.6661	1.7812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6661	1.7812	NaN	1	1	Median	44382000	17315000	27067000	0	0	0	0	0	0	0	0	0	44382000	17315000	27067000	895	2047;2717	851	5193	6878	6878			1	
ADAPVALVVHMAPASVLVDSR	0	Unmodified	2117.1303	0.13030925	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	97.104	96.968	3	1.4397E-09	85180	160511_QHF_FH_JSI11i_2	101.29	92.002			1.2472	1.2748	27.486	6	1	Median	1.4619	1.2228	NaN	1	0	Median	1.0919	1.3291	NaN	1	0	Median	1.4105	1.3613	54.018	2	1	Median	1.1429	1.2002	25.808	2	0	Median	319670000	142060000	177610000	25172000	9355100	15817000	49073000	20040000	29033000	122190000	52485000	69706000	123230000	60182000	63051000	896	4348	852	5194;5195;5196;5197;5198;5199;5200	6879;6880;6881;6882;6883;6884;6885;6886;6887;6888	6885			10	
ADATNVNNWHWTER	0	Unmodified	1712.7655	0.76553039	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.96		9	8						6	5	6	7	5	48.603	45.694	2;3	5.2909E-40	39935	160511_QHF_FH_JSI11i_3	218.85	201.82			1.0485	1.0259	27.033	19	2	Median	1.1843	0.99422	35.266	4	0	Median	0.88363	1.026	8.2842	3	1	Median	1.0855	1.0434	35.652	7	1	Median	1.0118	1.0163	18.158	5	0	Median	1487100000	753680000	733390000	158080000	80221000	77856000	236710000	131390000	105320000	683250000	322780000	360470000	409030000	219280000	189750000	897	694	853	5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223	6889;6890;6891;6892;6893;6894;6895;6896;6897;6898;6899;6900;6901;6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914	6889			24	
ADAVQDSEMVELVELEIR	0	Unmodified	2044.9987	0.99868596	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.41	101.38	3	6.4053E-08	92102	160511_QHF_FH_JSI10i_1	102.37	92.786			0.76609	0.90207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76609	0.90207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88706000	52227000	36479000	0	0	0	88706000	52227000	36479000	0	0	0	0	0	0	898	1658	854	5224	6915	6915			1	
ADAVWNK	1	Unmodified	802.39735	0.39735263	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.42	5	1					3	1		1	3	3	3	22.321	18.533	2	0.0035003	15959	160511_QHF_FH_JSI9i_1	104.11	50.401			1.001	1.0347	47.678	10	2	Median	1.1927	0.96228	NaN	1	0	Median	0.90074	1.0491	32.103	3	0	Median	1.0494	1.0299	63.801	3	0	Median	0.95475	1.0395	67.014	3	2	Median	1661600000	809220000	852340000	235520000	104300000	131220000	447650000	225580000	222070000	400810000	175200000	225610000	577570000	304140000	273440000	899	1544	855	5225;5226;5227;5228;5229;5230;5231;5232;5233;5234	6916;6917;6918;6919;6920;6921;6922;6923;6924;6925;6926;6927;6928;6929	6926			14	
ADAWEEIRR	0	Acetyl (Protein N-term)	1186.5731	0.57308516	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	1	0	1				By MS/MS	2	0		1											1	52.474	51.082	2	0.0047808	43631	160511_QHF_FH_JSI12i_2	54.776	39.568			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	900	615	856	5235	6930	6930			1	
ADCILYYGFGDIFR	0	Unmodified	1708.7919	0.79192806	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		93.114	87.394	2	1.6936E-06	47735	160513_QHF_FH_JSI11Kac_6	111.91	76.493			0.52027	0.61349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52027	0.61349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169270000	127970000	41300000	0	0	0	169270000	127970000	41300000	0	0	0	0	0	0	901	1579	857	5236;5237	6931;6932	6931			2	
ADDADEFGYSR	0	Unmodified	1244.4946	0.49456007	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	30.722	27.431	2	6.9421E-08	24802	160511_QHF_FH_JSI12i_1	125.74	123.87			1.4067	1.2427	33.774	6	0	Median	1.4842	1.1929	NaN	1	0	Median	1.4921	1.7403	NaN	1	0	Median	1.003	0.96804	41.098	2	0	Median	1.1387	1.2125	41.358	2	0	Median	990030000	435540000	554490000	178120000	76980000	101140000	245330000	100520000	144810000	362380000	174800000	187580000	204210000	83245000	120960000	902	3213	858	5238;5239;5240;5241;5242;5243	6933;6934;6935;6936;6937;6938;6939;6940	6935			8	
ADDGRPFPQVIK	1	Unmodified	1341.7041	0.70409934	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	5.23	10	8	12				3	4	1	6	9	11	12	44.837	42.097	2;3	5.1439E-10	35913	160511_QHF_FH_JSI11i_2	143.89	105.8			0.94876	0.97703	13.428	38	11	Median	1.1965	1.0023	5.9137	6	0	Median	0.91793	1.1	9.8814	9	2	Median	0.9324	0.90975	14.721	11	4	Median	0.91715	0.96497	13.516	12	5	Median	65903000000	33230000000	32674000000	6117200000	2838400000	3278800000	10709000000	5511900000	5197100000	18016000000	8831100000	9185400000	31061000000	16048000000	15012000000	903	803	859	5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281	6941;6942;6943;6944;6945;6946;6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976;6977;6978;6979;6980;6981;6982;6983;6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038;7039;7040;7041;7042;7043;7044;7045;7046;7047;7048;7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064	7022			124	
ADDGRPFPQVIKSK	2	Acetyl (K)	1598.8417	0.84165545	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	2		By MS/MS			14	0							1				1			57.627	46.968	3	0.01015	25890	160513_QHF_FH_JSI10Kac_4	53.403	42.919			1.1227	1.338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1227	1.338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22095000	10944000	11150000	0	0	0	22095000	10944000	11150000	0	0	0	0	0	0	904	803	860	5282	7065	7065	425		1	
ADDIDIEAMLEAPYKK	2	Acetyl (Protein N-term)	1862.8972	0.897181	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.02	100.9	2	4.1065E-15	91600	160511_QHF_FH_JSI11i_1	118.48	96.934			0.94302	0.94027	6.2167	4	0	Median	1.0908	0.89941	NaN	1	0	Median	0.82751	0.98298	NaN	1	0	Median	0.91892	0.89618	NaN	1	0	Median	0.96775	1.0127	NaN	1	0	Median	719350000	340240000	379110000	80252000	39254000	40998000	261400000	110570000	150830000	142450000	70512000	71941000	235250000	119900000	115340000	905	2538	861	5283;5284;5285;5286	7066;7067;7068;7069;7070;7071;7072;7073	7067			8	
ADDLDFETGDAGASATFPMQCSALR	0	Acetyl (Protein N-term)	2687.1479	0.14794574	2060	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	98.757	98.629	2;3	3.5655E-23	89339	160511_QHF_FH_JSI10i_1	182.15	182.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	906	2060	862	5287;5288;5289;5290;5291;5292;5293;5294;5295	7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086	7084			13	
ADDLDFETGDAGASATFPMQCSALRK	1	Acetyl (Protein N-term);Oxidation (M)	2831.2378	0.23782338	2060	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.463	76.985	3	1.1666E-20	69763	160511_QHF_FH_JSI10i_1	71.052	70.132			1.2678	1.2975	8.8693	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1018	1.2975	NaN	1	0	Median	1.1493	1.1158	NaN	1	0	Median	1.2678	1.3044	NaN	1	0	Median	290750000	126320000	164430000	13201000	0	13201000	89374000	40255000	49119000	89407000	41867000	47541000	98764000	44197000	54567000	907	2060	863	5296;5297;5298;5299	7087;7088;7089;7090	7089		1720	4	
ADDLDFETGDAGASATFPMQCSALRK	1	Acetyl (Protein N-term)	2815.2429	0.24290876	2060	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	87.393	86.946	2;3	8.9076E-69	79226	160511_QHF_FH_JSI12i_1	138.08	137.05			1.1494	1.2287	14.522	8	0	Median	1.6372	1.3311	5.9193	2	0	Median	0.99434	1.1643	2.1983	2	0	Median	0.99755	0.97179	3.8844	2	0	Median	1.2835	1.3555	1.5046	2	0	Median	3102200000	1378300000	1723800000	238870000	94065000	144810000	716810000	337840000	378970000	1301300000	607280000	694070000	845120000	339130000	505990000	908	2060	863	5300;5301;5302;5303;5304;5305;5306;5307;5308	7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113	7099			23	
ADDLEPIMELGR	0	Unmodified	1357.6548	0.65476588	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	74.276	73.721	2	3.1384E-05	65671	160511_QHF_FH_JSI9i_1	106.62	65.895			1.2604	1.1763	6.0047	3	1	Median	1.4116	1.1763	NaN	1	0	Median	0.99567	1.1659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2604	1.299	NaN	1	1	Median	278300000	126730000	151570000	95497000	39661000	55836000	83633000	46724000	36909000	0	0	0	99172000	40345000	58827000	909	1772	864	5309;5310;5311	7114;7115;7116	7116			3	
ADDLLPLGDQTQDGDFGSR	0	Unmodified	2018.9181	0.91812745	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	72.106	71.607	2	1.3135E-08	65117	160511_QHF_FH_JSI11i_1	113.25	90.135			1.2652	1.2212	7.6862	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2652	1.2212	NaN	1	1	Median	1.1695	1.2151	10.862	2	2	Median	74172000	31181000	42990000	0	0	0	0	0	0	28825000	10141000	18684000	45347000	21040000	24306000	910	318	865	5312;5313;5314;5315	7117;7118;7119;7120	7117			4	
ADDMSDDQGTSVQSK	1	Unmodified	1582.6417	0.64169459	2351	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.136	13.445	2	2.3395E-06	10783	160511_QHF_FH_JSI9i_1	127.71	118.03			1.3281	1.0822	NaN	1	0	Median	1.3281	1.0822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33303000	22149000	11154000	21339000	10185000	11154000	0	0	0	0	0	0	11964000	11964000	0	911	2351	866	5316;5317	7121;7122	7122			2	
ADDNATIR	0	Unmodified	874.41446	0.41445926	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.1858	6.8172	2	0.0019697	4302	160511_QHF_FH_JSI9i_1	83.623	57.4			1.049	1.0177	14.13	3	1	Median	1.52	1.2371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.049	1.0177	NaN	1	0	Median	0.89658	0.94005	NaN	1	1	Median	1218200000	596000000	622250000	285770000	121980000	163790000	0	0	0	478700000	248980000	229720000	453780000	225040000	228740000	912	570	867	5318;5319;5320;5321	7123;7124;7125;7126;7127	7127			5	
ADDPLLK	1	Unmodified	770.41742	0.41741937	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.74	26.166	2	0.017903	22620	160511_QHF_FH_JSI9i_1	60.76	5.3188			0.85791	0.91362	4.8644	4	0	Median	1.1397	0.95073	NaN	1	0	Median	0.82493	0.95654	NaN	1	0	Median	0.88894	0.87796	NaN	1	0	Median	0.82796	0.87542	NaN	1	0	Median	400720000	221980000	178750000	97025000	48086000	48940000	102290000	50088000	52201000	92509000	50444000	42065000	108900000	73360000	35541000	913	4003	868	5322;5323;5324;5325	7128;7129;7130;7131;7132	7131			5	
ADDPLRLDQELQQPQTQEK	1	Unmodified	2251.1081	0.10805348	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.825	57.173	3	5.3679E-08	50690	160511_QHF_FH_JSI9i_1	104.84	91.607			1.0114	1.0533	16.918	4	0	Median	0.95934	0.78418	NaN	1	0	Median	0.85704	1.0164	NaN	1	0	Median	1.1771	1.147	NaN	1	0	Median	1.0663	1.0916	NaN	1	0	Median	254520000	132900000	121610000	73191000	38128000	35064000	59061000	34500000	24560000	52997000	24506000	28491000	69267000	35768000	33499000	914	2320	869	5326;5327;5328;5329	7133;7134;7135;7136;7137;7138;7139;7140;7141	7140			9	
ADDPSAADRNVEIWK	1	Acetyl (Protein N-term)	1727.8115	0.81147753	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	58.156	57.259	2	5.1596E-05	52099	160511_QHF_FH_JSI12i_1	63.408	47.869			1.6374	1.4985	41.022	2	1	Median	2.5378	2.0028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0565	1.1212	NaN	1	0	Median	1786100000	579620000	1206500000	1069100000	210050000	859100000	0	0	0	0	0	0	717000000	369570000	347430000	915	2010	870	5330;5331;5332;5333	7142;7143;7144;7145;7146	7144			5	
ADDPSSYMEVVQAANTSGNWEELVK	1	Unmodified	2739.2334	0.23338993	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	101.01	100.88	2;3	4.8211E-219	91459	160511_QHF_FH_JSI12i_1	426.31	407.24			0.98918	1.0037	10.988	9	2	Median	1.2717	1.0037	6.6043	3	2	Plateau	0.97056	1.1391	1.802	2	0	Median	1.0358	1.0034	8.0857	2	0	Median	0.82797	0.87083	9.2928	2	0	Median	5979200000	3013700000	2965500000	1159300000	509660000	649620000	1797600000	905190000	892380000	1184200000	568720000	615480000	1838200000	1030100000	808020000	916	2155	871	5334;5335;5336;5337;5338;5339;5340;5341;5342	7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162	7153			16	
ADDPSSYMEVVQAANTSGNWEELVK	1	Oxidation (M)	2755.2283	0.22830455	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	91.237	90.993	3	5.9759E-13	82497	160511_QHF_FH_JSI10i_1	117.62	111.65			0.49916	0.5509	17.036	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53065	0.62143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46954	0.48838	NaN	1	1	Median	121830000	74631000	47197000	0	0	0	57964000	31264000	26700000	0	0	0	63864000	43367000	20497000	917	2155	871	5343;5344;5345	7163;7164;7165;7166	7165		1794	4	
ADDPTMGEGPDK	1	Unmodified	1231.5027	0.50268192	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	19.131	16.459	2	4.8132E-08	14251	160511_QHF_FH_JSI10i_1	139.31	93.939			0.93129	0.9999	22.873	6	0	Median	0.91606	0.75029	NaN	1	0	Median	1.0886	1.2828	NaN	1	0	Median	1.0426	1.0133	34.12	2	0	Median	0.92083	0.9999	1.7118	2	0	Median	517990000	266760000	251230000	106070000	70638000	35436000	142760000	76336000	66421000	142870000	58330000	84545000	126290000	61458000	64828000	918	1962	872	5346;5347;5348;5349;5350;5351	7167;7168;7169;7170;7171;7172;7173;7174;7175;7176	7174			10	
ADDPTMGEGPDK	1	Oxidation (M)	1247.4976	0.49759654	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	4.76	1				3					1	1	1	1	13.866	6.6029	2	0.0034315	13861	160511_QHF_FH_JSI9i_1	65.278	44.974			0.87081	0.83049	19.877	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.094	1.1966	NaN	1	0	Median	0.87081	0.80648	NaN	1	0	Median	0.94468	1.0246	NaN	1	0	Median	7019300	3372100	3647200	0	0	0	1058000	544030	513990	3743600	1700800	2042800	2217700	1127200	1090500	919	1962	872	5352;5353;5354;5355	7177;7178;7179;7180;7181;7182	7180		1633	6	
ADDPYAHLSK	1	Unmodified	1115.5247	0.52473799	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.13	4.29	7	6					2			4	2	5	4	21.322	20.182	2;3	0.00031565	16516	160511_QHF_FH_JSI12i_2	79.148	49.675			1.0586	0.98568	21.509	14	1	Median	1.1462	0.96192	5.0322	4	0	Median	0.81106	0.97204	7.583	2	0	Median	1.015	1.0016	8.7205	5	0	Median	1.0508	1.1036	43.642	3	1	Median	1291800000	659440000	632390000	289090000	136330000	152770000	302030000	169140000	132890000	505300000	262810000	242490000	195420000	91165000	104250000	920	3634	873	5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370	7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193	7184			11	
ADDTSAATIEK	1	Unmodified	1120.5248	0.52479757	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	2	1	17.176	14.483	2	6.6643E-18	12261	160511_QHF_FH_JSI11i_1	157.24	116.21			1.0115	1.1945	18.437	6	0	Linear	1.3962	1.1668	NaN	1	0	Median	0.92448	1.075	24.503	2	0	Median	1.0429	1.014	29.932	2	0	Median	0.93107	0.97392	NaN	1	0	Median	1376000000	661780000	714250000	336260000	150170000	186090000	374320000	181450000	192870000	354940000	160950000	193990000	310510000	169200000	141310000	921	5543	874	5371;5372;5373;5374;5375;5376	7194;7195;7196;7197;7198;7199;7200;7201;7202	7195			9	
ADDVDQQQTTNTVEEPLDLIR	0	Acetyl (Protein N-term)	2441.1558	0.15579154	1999	P62310	LSM3	U6 snRNA-associated Sm-like protein LSm3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	92.582	92.322	2	1.0793E-32	83874	160511_QHF_FH_JSI10i_1	258.81	245.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	922	1999	875	5377;5378;5379;5380;5381;5382;5383	7203;7204;7205;7206;7207;7208;7209	7207			7	
ADDYEQVK	1	Unmodified	966.42944	0.42944062	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		11.989	11.806	2	0.0024429	9389	160511_QHF_FH_JSI11i_1	88.37	67.671			3.0959	3.3194	11.069	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5827	3.0695	NaN	1	1	Median	3.7109	3.5896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	901010000	191950000	709060000	0	0	0	416200000	107710000	308490000	484810000	84234000	400580000	0	0	0	923	1954	876	5384;5385	7210;7211	7210			2	
ADEALNK	1	Unmodified	759.37628	0.37628284	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	7.3773	4.0742	2	0.010636	4291	160511_QHF_FH_JSI9i_1	73.975	24.917			0.95795	0.98327	14.994	7	0	Median	1.4135	1.1729	NaN	1	0	Median	0.80889	0.93763	6.7221	2	0	Median	0.90595	0.88277	9.512	2	0	Median	1.0601	1.1377	15.31	2	0	Median	769910000	380690000	389220000	161330000	74715000	86612000	221310000	121250000	100060000	186540000	82567000	103980000	200730000	102160000	98573000	924	1778	877	5386;5387;5388;5389;5390;5391;5392	7212;7213;7214	7213			3	
ADEAPRK	1	Acetyl (Protein N-term)	827.41373	0.41373097	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	7.7112	2.1785	2	0.0019087	4469	160511_QHF_FH_JSI9i_1	81.297	63.735			0.95028	1.0227	21.313	4	0	Median	NaN	NaN	NaN	0	0	Median	0.93029	1.0889	NaN	1	0	Median	0.97069	0.96063	NaN	1	0	Median	1.0433	1.1266	34.506	2	0	Median	381340000	172130000	209210000	0	0	0	5464000	2972100	2492000	13680000	7105700	6574800	362190000	162050000	200140000	925	2456	878	5393;5394;5395;5396;5397	7215;7216;7217;7218;7219;7220	7218			5	
ADEARPNTIDFGK	1	Unmodified	1432.6947	0.69465686	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		1.33	0.471	2	1								1	1	1		31.173	30.637	3	0.044276	26541	160511_QHF_FH_JSI9i_2	28.297	16.321			1.0508	1.0044	2.9955	3	0	Median	1.0905	0.95913	NaN	1	0	Median	0.86437	1.0145	NaN	1	0	Median	1.0508	1.0044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92860000	47705000	45155000	31213000	14028000	17185000	36122000	18906000	17216000	25524000	14770000	10754000	0	0	0	926	971	879	5398;5399;5400	7221	7221			1	
ADEASELACPTPK	1	Unmodified	1387.6289	0.62894506	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	3	1	30.308	29.71	2;3	1.1562E-30	25849	160511_QHF_FH_JSI9i_1	189.58	163.65			0.83986	1.0494	17.167	4	1	Linear	1.2063	1.0062	NaN	1	0	Median	0.94475	1.0944	NaN	1	0	Median	0.83499	0.82631	NaN	1	0	Median	1.1763	1.244	NaN	1	1	Median	641630000	302540000	339090000	85844000	31694000	54150000	151710000	77575000	74137000	198750000	104440000	94306000	205320000	88830000	116490000	927	1650	880	5401;5402;5403;5404;5405;5406	7222;7223;7224;7225;7226;7227;7228;7229;7230;7231	7231			10	
ADEATRR	0	Acetyl (Protein N-term)	859.41479	0.41479361	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	6.0587	4.2791	2	0.0025359	3668	160511_QHF_FH_JSI10i_1	87.323	75.674			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	928	5583	881	5407;5408;5409;5410;5411	7232;7233;7234;7235;7236	7234			5	
ADEAYLIGR	0	Unmodified	1006.5084	0.50835964	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.251	37.632	2	5.2914E-06	34140	160511_QHF_FH_JSI12i_1	116.25	94.95			0.86402	0.81833	5.15	4	0	Linear	1.1559	0.93044	NaN	1	0	Median	0.73006	0.85719	NaN	1	0	Median	0.85086	0.8242	NaN	1	0	Median	0.87739	0.88711	NaN	1	0	Median	949260000	513320000	435940000	178700000	85926000	92777000	252740000	132880000	119860000	336190000	197190000	139000000	181630000	97328000	84301000	929	1002	882	5412;5413;5414;5415	7237;7238;7239;7240;7241;7242;7243	7239			7	
ADEDGEGIHPSAPHR	0	Acetyl (Protein N-term)	1628.7179	0.7179115	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	1	3		22.567	22.078	2;3	6.7969E-12	18694	160511_QHF_FH_JSI9i_2	103.91	86.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	930	4164	883	5416;5417;5418;5419;5420;5421	7244;7245;7246;7247;7248;7249	7247			6	
ADEDPALFQSVK	1	Unmodified	1318.6405	0.64049603	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.6	4.8	1					4					2	2	1	58.766	51.144	2	7.9141E-11	45464	160511_QHF_FH_JSI11i_1	147.3	109.01			0.80716	0.90992	47.966	4	0	Median	NaN	NaN	NaN	0	0	Median	0.74022	0.87711	NaN	1	0	Median	0.59792	0.57802	69.363	2	0	Median	0.88015	0.94489	NaN	1	0	Median	239910000	181070000	58840000	0	0	0	9991900	5074800	4917100	220360000	170800000	49565000	9550500	5191800	4358700	931	1636	884	5422;5423;5424;5425;5426	7250;7251;7252;7253;7254;7255	7250			6	
ADEDPIMGFHQMFLLK	1	Unmodified	1890.9008	0.90082659	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.65		12	6						5	5	5	8	5	96.105	93.872	2;3	6.1231E-41	84773	160511_QHF_FH_JSI12i_2	206.63	188.93			0.89911	0.93252	21.882	20	4	Median	1.083	0.91842	32.559	5	0	Median	0.8087	0.98099	15.255	4	1	Median	0.90329	0.91025	18.343	6	1	Median	0.90538	0.99029	8.9768	5	2	Median	3008100000	1508100000	1500100000	590320000	279340000	310980000	675890000	363160000	312720000	1068600000	536860000	531710000	673360000	328720000	344640000	932	1974	885	5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449	7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305	7262			50	
ADEDPIMGFHQMFLLK	1	Oxidation (M)	1906.8957	0.89574121	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				81.516	72.883	3	0.014054	39659	160513_QHF_FH_JSI9Kac_6	42.314	32.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	933	1974	885	5450	7306	7306		1636	1	
ADEEEMLDNLPEAGDSR	0	Unmodified	1889.7949	0.79490077	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	61.379	60.887	2	2.1726E-16	54115	160511_QHF_FH_JSI9i_1	119.32	111.01			0.91852	0.98274	15.081	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78657	0.87859	NaN	1	0	Median	1.1916	1.1842	NaN	1	1	Median	0.91852	0.98274	NaN	1	0	Median	97213000	48977000	48236000	0	0	0	33117000	15888000	17229000	26813000	11130000	15683000	37283000	21959000	15325000	934	4896	886	5451;5452;5453;5454;5455	7307;7308;7309;7310;7311;7312;7313	7313			7	
ADEELEALRR	0	Acetyl (Protein N-term)	1242.6204	0.62042929	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								2	1	1	1	50.875	49.849	2	2.1645E-07	42584	160511_QHF_FH_JSI12i_2	138.98	109.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	935	196	887	5456;5457;5458;5459;5460	7314;7315;7316;7317;7318;7319	7314			6	
ADEEPTPADGR	0	Unmodified	1156.4996	0.49964545	3971	Q96AT1	KIAA1143	Uncharacterized protein KIAA1143	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.9597	9.5792	2	2.667E-07	7412	160511_QHF_FH_JSI12i_1	120.99	101.2			1.0731	1.0875	10.301	4	1	Median	1.3914	1.1336	NaN	1	0	Median	1.0778	1.2826	NaN	1	1	Median	1.0684	1.0224	NaN	1	0	Median	0.9817	1.0433	NaN	1	0	Median	237630000	112610000	125010000	61366000	27501000	33865000	63611000	28624000	34987000	51648000	22807000	28841000	61002000	33682000	27320000	936	3971	888	5461;5462;5463;5464	7320;7321;7322;7323	7321			3	
ADEGISFR	0	Unmodified	893.4243	0.42429566	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.18	4	4	4			1	3	3	1	5	5	5	5	31.142	26.479	2	2.1625E-07	24768	160511_QHF_FH_JSI11i_1	154.35	81.311			0.93923	0.99824	8.9279	20	0	Median	1.3945	1.1595	10.305	5	0	Median	0.83804	0.98493	5.1805	5	0	Median	0.98529	0.93293	6.7992	5	0	Median	0.92439	0.97773	4.8102	5	0	Median	27144000000	12966000000	14178000000	5289100000	2270500000	3018500000	7754900000	4021000000	3733900000	7482400000	3549100000	3933300000	6617500000	3125300000	3492100000	937	2249	889	5465;5466;5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483;5484	7324;7325;7326;7327;7328;7329;7330;7331;7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342;7343;7344;7345;7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363;7364;7365	7327			42	
ADELNNKHTIFGK	2	Acetyl (K)	1527.7682	0.76815616	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		56.072	45.249	3	0.024	24950	160513_QHF_FH_JSI11Kac_5	43.594	31.449			0.43177	0.41034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43177	0.41034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2238500	1924900	313580	0	0	0	0	0	0	2238500	1924900	313580	0	0	0	938	3156	890	5485	7366	7366	2782		1	
ADEMYDK	1	Unmodified	870.34293	0.3429338	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.669	10.285	2	0.0063847	8174	160511_QHF_FH_JSI12i_1	91.9	68.881			1.3604	1.4538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3604	1.4538	NaN	1	1	Median	355370000	131250000	224120000	0	0	0	0	0	0	0	0	0	355370000	131250000	224120000	939	611	891	5486	7367	7367			1	
ADEPMEH	0	Unmodified	827.31197	0.31196802	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.7806	7.433	2	0.00053563	5288	160511_QHF_FH_JSI12i_1	132.72	127.49			1.3599	1.0654	19.73	4	0	Linear	1.2845	1.0148	NaN	1	0	Median	1.3367	1.5494	NaN	1	0	Median	1.0854	1.0454	NaN	1	0	Median	1.0207	1.0858	NaN	1	0	Median	4004000000	1839900000	2164200000	1049200000	482550000	566670000	1107000000	462740000	644250000	933710000	461110000	472600000	914110000	433460000	480650000	940	1264	892	5487;5488;5489;5490	7368;7369;7370;7371;7372;7373;7374;7375	7370			8	
ADEPMEH	0	Oxidation (M)	843.30688	0.30688264	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	4.67	5.19	2				1							1	2	6.6361	4.1107	2	0.00022743	1218	160513_QHF_FH_JSI12Kac_2	117.56	117.56			0.92019	0.932	0.62377	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94683	0.92294	NaN	1	0	Median	0.89332	0.93286	0.12906	2	0	Median	341430000	178250000	163180000	0	0	0	0	0	0	170280000	84224000	86053000	171150000	94025000	77124000	941	1264	892	5491;5492;5493	7376;7377;7378;7379	7379		892	4	
ADEPSSEESDLEIDK	1	Unmodified	1662.7108	0.71082002	1707	P50502;Q8IZP2	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	yes	no	0	0	0	0				By MS/MS	1	0	1												1	38.336	37.731	2	0.010615	34228	160511_QHF_FH_JSI12i_1	45.879	38.991			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	942	1707	893	5494	7380	7380			1	
ADEVAPAK	1	Unmodified	799.40758	0.40758296	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	3	3	2	8.7746	4.5683	2	0.00035515	5379	160511_QHF_FH_JSI11i_1	111.01	60.042			0.77677	0.84985	15.78	9	0	Median	0.8538	0.70631	NaN	1	0	Median	0.68334	0.81976	6.3182	3	0	Plateau	0.64476	0.62728	18.041	3	0	Plateau	0.72375	0.75466	26.959	2	0	Median	2365400000	1365200000	1000200000	559120000	291680000	267440000	600890000	339600000	261290000	714090000	429990000	284100000	491320000	303950000	187370000	943	1798	894	5495;5496;5497;5498;5499;5500;5501;5502;5503	7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392	7381			12	
ADEVAPAKK	2	Unmodified	927.50255	0.50254598	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	6.0584	3.8176	2;3	9.5171E-05	3309	160511_QHF_FH_JSI11i_1	94.302	60.506			0.97479	1.0781	26.707	5	0	Median	1.6854	1.3827	NaN	1	0	Median	1.0494	1.2247	18.026	2	0	Median	0.74485	0.73166	NaN	1	0	Median	0.97479	0.98454	NaN	1	0	Median	644650000	323420000	321230000	107170000	39801000	67371000	199230000	101800000	97437000	223620000	125030000	98590000	114630000	56802000	57827000	944	1798	895	5504;5505;5506;5507;5508	7393;7394;7395;7396;7397;7398;7399	7393			7	
ADEVVAPGQEK	1	Unmodified	1141.5615	0.56151742	3457	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	16.905	16.784	2	0.00062072	14110	160511_QHF_FH_JSI11i_1	74.944	58.168			0.58605	0.58205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58605	0.58205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26846000	19875000	6971000	0	0	0	0	0	0	26846000	19875000	6971000	0	0	0	945	3457	896	5509;5510;5511;5512;5513;5514;5515	7400;7401;7402;7403;7404;7405;7406	7401			7	
ADEVVWVR	0	Unmodified	972.50288	0.50288033	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.14	5.62	2	3					2			2	2		3	45.568	41.823	2	0.0022922	38090	160511_QHF_FH_JSI12i_1	81.191	50.578			0.90946	0.96461	18.712	7	3	Median	1.0476	0.87287	8.9902	2	1	Median	0.83726	1.014	7.0615	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90946	0.9827	26.588	3	1	Median	525400000	252160000	273240000	151610000	62617000	88990000	94873000	49036000	45836000	0	0	0	278920000	140510000	138410000	946	1064	897	5516;5517;5518;5519;5520;5521;5522	7407;7408;7409;7410;7411;7412;7413;7414	7408			8	
ADEWLMK	1	Unmodified	891.41604	0.41603916	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.5	6	4	1				1			4	2	4	2	44.49	42.663	2	0.0033031	36495	160511_QHF_FH_JSI11i_2	105.39	72.92			0.97079	1.0396	57.822	11	2	Median	1.1615	0.98154	101.91	4	1	Median	0.89665	1.0774	4.8256	2	0	Median	1.0838	1.0858	18.923	3	1	Median	0.86577	0.95204	11.806	2	0	Median	2477100000	1167700000	1309500000	382380000	166110000	216270000	678510000	317830000	360680000	778550000	364340000	414210000	637670000	319380000	318290000	947	1436;1437	898	5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534	7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435	7433			21	
ADFAQACQDAGVR	0	Unmodified	1407.6201	0.62011171	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.829	32.489	2	0.011605	28869	160511_QHF_FH_JSI10i_1	67.08	58.547			0.65855	0.79608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65855	0.79608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79982000	47577000	32405000	0	0	0	79982000	47577000	32405000	0	0	0	0	0	0	948	1002	899	5535	7436	7436			1	
ADFCIIHYAGK	1	Unmodified	1293.6176	0.61759251	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.49		1	1					5	8	3	5	4	3	62.87	54.308	2;3	2.4161E-09	29417	160513_QHF_FH_JSI11Kac_6	141.88	130.39			1.1614	1.1923	24.328	15	2	Median	1.3116	1.1274	21.671	3	0	Median	1.0521	1.2666	25.02	5	1	Median	0.93273	0.91435	11.685	4	0	Median	1.3414	1.4401	3.2368	3	1	Plateau	1190000000	582140000	607830000	109640000	46354000	63289000	497580000	255870000	241710000	467140000	226550000	240590000	115600000	53362000	62235000	949	1436;1437	900	5536;5537;5538;5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550	7437;7438;7439;7440;7441;7442;7443;7444;7445;7446;7447;7448;7449;7450;7451;7452;7453;7454;7455	7441			18	
ADFDDRVSDEEK	1	Acetyl (Protein N-term)	1466.6161	0.61613177	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	39.389	35.914	2	6.5416E-06	32228	160511_QHF_FH_JSI10i_1	132.56	129.71			0.97365	1.0566	0.32492	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90115	1.0542	NaN	1	0	Median	1.052	1.0591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	950300000	5267200	945030000	138100000	0	138100000	248350000	2617400	245730000	214570000	2649800	211920000	349280000	0	349280000	950	1788	901	5551;5552;5553;5554;5555;5556	7456;7457;7458;7459;7460;7461;7462	7459			7	
ADFDNTVAIHPTSSEELVTLR	0	Unmodified	2314.1441	0.14410464	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1								2	3	4	74.299	73.403	2;3	9.6661E-34	64457	160511_QHF_FH_JSI11i_2	149.85	130.3			1.0194	1.1339	12.766	5	3	Median	NaN	NaN	NaN	0	0	Median	0.94549	1.1339	NaN	1	0	Median	1.0505	1.0759	NaN	1	0	Median	1.0194	1.1436	17.693	3	3	Median	541670000	295750000	245930000	0	0	0	150520000	70932000	79591000	161730000	95337000	66393000	229420000	129480000	99942000	951	765	902	5557;5558;5559;5560;5561;5562;5563;5564;5565	7463;7464;7465;7466;7467;7468;7469;7470	7466			8	
ADFDTYDDR	0	Acetyl (Protein N-term)	1158.4465	0.44654725	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.29	4			1	2					1	2	3	1	48.099	43.711	2	6.5584E-05	17091	160513_QHF_FH_JSI11Kac_1	97.431	80.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	952	2619	903	5566;5567;5568;5569;5570;5571;5572	7471;7472;7473;7474;7475;7476;7477	7477			7	
ADFDTYDDRAYSSFGGGR	0	Acetyl (Protein N-term)	2040.845	0.84496251	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.716	66.115	2	2.5254E-91	60269	160511_QHF_FH_JSI12i_1	369.03	364.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	953	2619	904	5573;5574;5575;5576	7478;7479;7480;7481;7482;7483;7484	7480			7	
ADFFEDENGQR	0	Unmodified	1326.5477	0.54765827	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.647	36.039	2	7.0403E-08	32312	160511_QHF_FH_JSI11i_1	125.71	124.72			1.1811	1.0605	20.407	4	0	Median	1.1913	0.97302	NaN	1	0	Median	1.1709	1.3648	NaN	1	0	Median	1.193	1.1558	NaN	1	0	Median	0.8124	0.85419	NaN	1	0	Median	732680000	367900000	364780000	73738000	37716000	36021000	243660000	120210000	123440000	276420000	125380000	151050000	138860000	84593000	54266000	954	707	905	5577;5578;5579;5580	7485;7486;7487;7488	7485			2	
ADFLIFR	0	Unmodified	880.48069	0.48068833	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	76.379	75.532	2	0.019772	67222	160511_QHF_FH_JSI10i_2	57.811	42.175			1.02	1.0604	5.167	4	0	Median	1.2469	1.053	NaN	1	0	Median	0.86279	1.0679	NaN	1	0	Median	1.117	1.1066	NaN	1	0	Median	0.93133	0.97859	NaN	1	0	Median	63260000	32296000	30963000	8896300	4507000	4389200	14368000	7286200	7082100	26239000	12696000	13542000	13756000	7806700	5949500	955	3480	906	5581;5582;5583;5584	7489	7489			1	
ADFQGISPER	0	Unmodified	1118.5356	0.53563702	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.45	5	4					3			2	5	3	2	37.744	34.515	2	2.927E-08	31448	160511_QHF_FH_JSI12i_1	125.97	94.035			1.0244	1.1476	13.214	11	4	Median	1.4495	1.2217	20.856	2	1	Median	0.96575	1.1387	12.739	4	3	Median	1.171	1.1618	5.9336	3	0	Plateau	0.93656	0.98129	3.1243	2	0	Median	990780000	478170000	512610000	200100000	78157000	121940000	384490000	215180000	169310000	228150000	88864000	139280000	178040000	95959000	82085000	956	1964	907	5585;5586;5587;5588;5589;5590;5591;5592;5593;5594;5595;5596	7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501;7502;7503;7504;7505	7494			16	
ADFQKVLQLYPNNK	2	Acetyl (K)	1718.8992	0.89917033	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		83.216	72.678	2	0.0047422	38382	160513_QHF_FH_JSI11Kac_5	72.652	46.609			0.094117	0.092822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.094117	0.092822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2943900	2867900	76014	0	0	0	0	0	0	2943900	2867900	76014	0	0	0	957	2193	908	5597	7506	7506	2304		1	
ADFSGMSQTDLSLSK	1	Unmodified	1585.7294	0.72938739	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.9	4	2	5							3	4	2	2	61.93	60.914	2	1.4529E-65	54354	160511_QHF_FH_JSI9i_1	278.27	252.61			0.94734	1.0074	18.74	7	2	Median	1.1129	0.91335	25.466	2	0	Median	0.68232	0.79233	23.094	3	2	Median	1.0378	1.0074	NaN	1	0	Median	0.986	1.0505	NaN	1	0	Median	4532300000	2135100000	2397200000	933480000	410720000	522760000	1098200000	608910000	489320000	1208200000	506750000	701470000	1292400000	608700000	683690000	958	1425	909	5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608	7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528	7524			22	
ADFSGMSQTDLSLSK	1	Oxidation (M)	1601.7243	0.72430201	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.603	46.924	2	1.7978E-29	42345	160511_QHF_FH_JSI11i_1	186.16	172.81			0.97195	0.99467	6.6556	4	0	Median	1.2945	1.0732	NaN	1	0	Median	0.81183	0.96359	NaN	1	0	Median	0.93529	0.92362	NaN	1	0	Median	1.01	1.0268	NaN	1	0	Median	440280000	238500000	201780000	85366000	44676000	40690000	133110000	77009000	56096000	92859000	44305000	48554000	128950000	72510000	56442000	959	1425	909	5609;5610;5611;5612	7529;7530;7531;7532;7533;7534	7530		1082	6	
ADFSPFGNSQGPSR	0	Unmodified	1465.6586	0.65860571	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	47.999	47.017	2	0.00012735	40418	160511_QHF_FH_JSI11i_2	100.72	96.705			0.86903	0.88694	9.5963	4	1	Median	1.0214	0.87578	NaN	1	1	Median	0.83758	1.0331	NaN	1	0	Median	0.90166	0.89825	NaN	1	0	Median	0.75539	0.82326	NaN	1	0	Median	154930000	79141000	75787000	41303000	17714000	23589000	23778000	15086000	8691800	51721000	24930000	26791000	38126000	21410000	16716000	960	4678	910	5613;5614;5615;5616;5617	7535;7536;7537;7538;7539;7540;7541	7538			7	
ADFTVVAGDEGSSTTGGSSEENK	1	Unmodified	2243.9666	0.96659378	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	42.868	42.132	2	1.4368E-30	38023	160511_QHF_FH_JSI11i_1	182.1	173.05			0.94633	0.89766	28.995	3	2	Median	1.0804	0.91052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94633	0.89766	NaN	1	0	Median	0.5216	0.54721	NaN	1	1	Median	52425000	31266000	21159000	8607100	2344200	6262900	0	0	0	23036000	12614000	10423000	20781000	16308000	4473000	961	1694	911	5618;5619;5620	7542;7543;7544;7545	7542			4	
ADFVCSTVQKPDAANYYYLIILK	2	Unmodified	2691.3618	0.36182533	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		90.023	80.674	3	2.1956E-05	45153	160513_QHF_FH_JSI11Kac_6	72.187	58.999			0.97055	0.96502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97055	0.96502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37714000	15154000	22560000	0	0	0	0	0	0	37714000	15154000	22560000	0	0	0	962	4929	912	5621	7546	7546			1	
ADFVLAANSYDLAIK	1	Unmodified	1609.8352	0.83517309	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.33	0.471	2	1								2	1			86.645	86.164	2	0.00011115	78176	160511_QHF_FH_JSI10i_1	125.82	91.932			0.80092	0.81778	14.492	3	1	Median	0.92871	0.76362	19.717	2	1	Median	0.69925	0.81778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124320000	65869000	58453000	51761000	27932000	23829000	72561000	37937000	34624000	0	0	0	0	0	0	963	2528	913	5622;5623;5624	7547;7548;7549;7550	7548			3	
ADGAEAKPAE	1	Unmodified	957.44034	0.44033966	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.4043	6.0699	2	6.6075E-05	3809	160511_QHF_FH_JSI11i_1	105.2	86.465			0.90848	0.94794	2.9136	4	0	Median	1.1662	0.94758	NaN	1	0	Median	0.81455	0.96164	NaN	1	0	Median	0.92488	0.9	NaN	1	0	Median	0.89237	0.94831	NaN	1	0	Median	2982600000	1494600000	1488000000	631540000	290760000	340770000	809610000	419120000	390480000	692650000	301350000	391300000	848790000	483320000	365470000	964	1436	914	5625;5626;5627;5628	7551;7552;7553;7554;7555	7551			5	
ADGELNVDSLITR	0	Acetyl (Protein N-term)	1443.7205	0.72053726	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.098	85.614	2	1.1472E-12	77822	160511_QHF_FH_JSI11i_1	117.09	108.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	965	1981	915	5629;5630;5631;5632	7556;7557;7558;7559;7560;7561	7556			6	
ADGETILK	1	Unmodified	845.44945	0.44944778	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.686	21.164	2	0.007058	18007	160511_QHF_FH_JSI9i_1	60.682	21.89			0.69857	0.74319	15.234	4	0	Median	0.90136	0.7456	NaN	1	0	Median	0.62369	0.74078	NaN	1	0	Median	0.78244	0.75381	NaN	1	0	Median	0.53098	0.55078	NaN	1	0	Median	2114100000	1126500000	987640000	562410000	302690000	259710000	449960000	247050000	202920000	569790000	273400000	296390000	531950000	303330000	228610000	966	1784	916	5633;5634;5635;5636	7562	7562			1	
ADGGTQVIDTK	1	Unmodified	1103.5459	0.54586736	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	20.868	16.323	2	1.3683E-47	14478	160511_QHF_FH_JSI12i_1	212.82	187.26			1.0634	1.0608	11.994	10	1	Median	1.1584	0.94811	NaN	1	0	Median	1.035	1.2445	12.156	3	1	Median	1.0926	1.0708	1.1585	3	0	Plateau	0.89675	0.98432	9.9511	3	0	Median	2558100000	1244400000	1313700000	698580000	314870000	383710000	695260000	393220000	302030000	673020000	291970000	381050000	491230000	244320000	246910000	967	935	917	5637;5638;5639;5640;5641;5642;5643;5644;5645;5646	7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579	7568			17	
ADGIVPETWIDGPK	1	Unmodified	1496.7511	0.75110911	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	75.37	74.945	2	9.4088E-05	66644	160511_QHF_FH_JSI9i_1	111.63	92.885			0.82288	0.81118	36.054	5	1	Median	0.98447	0.81118	NaN	1	0	Median	0.89802	1.0631	63.539	2	1	Median	0.75639	0.72059	NaN	1	0	Median	0.82288	0.87857	NaN	1	0	Median	440160000	252040000	188110000	99984000	54558000	45427000	172350000	101370000	70975000	107120000	64256000	42866000	60703000	31856000	28847000	968	3960	918	5647;5648;5649;5650;5651	7580;7581;7582;7583;7584;7585;7586;7587;7588;7589	7589			10	
ADGIVSK	1	Unmodified	688.37555	0.37555455	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	3	2	10.794	6.5982	2	0.0039208	4918	160513_QHF_FH_JSI11Kac_3	98.997	52.626			0.85377	0.99082	20.373	9	0	Median	1.7798	1.4901	NaN	1	0	Median	0.75997	0.91498	5.1605	3	0	Plateau	1.018	0.99149	19.67	3	0	Median	0.75783	0.81415	4.4605	2	0	Median	12610000000	6565700000	6043800000	2481600000	1080000000	1401500000	3552500000	1846300000	1706300000	3348500000	1762600000	1585900000	3226900000	1876800000	1350200000	969	2059	919	5652;5653;5654;5655;5656;5657;5658;5659;5660	7590;7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601	7592			12	
ADGIVSKNF	1	Acetyl (K)	991.49746	0.4974606	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.9	0.781				3	3	2					3	3	2	67.975	58.486	2	0.00010089	23449	160513_QHF_FH_JSI10Kac_1	117.93	103.27			0.83775	0.94154	47.128	8	0	Median	NaN	NaN	NaN	0	0	Median	0.88678	1.0641	1.5135	3	0	Plateau	0.51822	0.50406	31.311	3	0	Median	0.91138	0.98997	20.333	2	0	Median	146210000	77960000	68251000	0	0	0	50512000	26729000	23783000	21358000	14450000	6908700	74341000	36781000	37560000	970	2059	920	5661;5662;5663;5664;5665;5666;5667;5668	7602;7603;7604;7605;7606;7607;7608;7609;7610;7611	7609	2124		10	
ADGKAGDEKPEK	3	Acetyl (K);Acetyl (Protein N-term)	1327.6256	0.62557424	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	1	0	2		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	19.245	12.159	2	0.0011826	6759	160513_QHF_FH_JSI10Kac_2	52.79	40.942			0.84399	0.8985	5.811	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83122	0.96186	NaN	1	0	Median	1.0441	1.0061	NaN	1	0	Median	0.84399	0.89652	NaN	1	0	Median	12808000	6851100	5956600	0	0	0	3724200	2230300	1493800	2253200	1147000	1106200	6830400	3473800	3356600	971	3793	921	5669;5670;5671	7612;7613;7614;7615	7614	2936		4	
ADGKISEQSDAK	2	Acetyl (K)	1289.6099	0.60992418	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	18.88	11.692	2	0.0010382	7922	160513_QHF_FH_JSI12Kac_3	83	65.974			0.81386	0.87796	8.9118	6	0	Median	NaN	NaN	NaN	0	0	Median	0.70162	0.83081	13.795	2	0	Median	0.92007	0.89462	11.893	2	0	Median	0.81386	0.87796	2.485	2	0	Median	50362000	27111000	23251000	0	0	0	17655000	9542100	8112700	10887000	5443200	5443900	21820000	12126000	9694600	972	1263	922	5672;5673;5674;5675;5676;5677	7616;7617;7618;7619;7620;7621;7622;7623;7624;7625	7621	1155;1156		10	
ADGLLGMFLK	1	Unmodified	1063.5736	0.57360243	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	100.61	100.61	2	6.0111E-05	87205	160511_QHF_FH_JSI12i_3	91.069	73.083			0.86913	0.87783	46.298	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65722	0.63275	NaN	1	1	Median	1.1494	1.2178	NaN	1	0	Median	26729000	15791000	10938000	0	0	0	0	0	0	8104000	5051100	3052900	18625000	10740000	7885300	973	3562	923	5678;5679;5680	7626;7627;7628;7629	7629			4	
ADGNQLTLEER	0	Unmodified	1244.5997	0.59969384	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.606	27.025	2	8.028E-06	23874	160511_QHF_FH_JSI10i_1	125.23	112.25			6.4068	7.6847	23.226	4	4	Linear	9.5174	7.8195	NaN	1	1	Median	6.3426	7.5523	NaN	1	1	Median	6.4304	6.2349	NaN	1	1	Median	10.266	10.905	NaN	1	1	Median	4681800000	236140000	4445700000	1486700000	48787000	1437900000	1828100000	76895000	1751200000	660380000	74909000	585470000	706590000	35551000	671040000	974	3173	924	5681;5682;5683;5684	7630;7631;7632;7633	7632			4	
ADGNQLTLEERR	0	Unmodified	1400.7008	0.70080487	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	1	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	20.611	20.021	3	0.01047	16383	160511_QHF_FH_JSI12i_3	30.3	23.396			1.3154	1.2899	3.6912	4	0	Median	1.4312	1.2432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.333	1.3259	NaN	1	0	Median	1.2439	1.2946	4.4067	2	0	Median	141280000	55670000	85607000	33880000	11144000	22736000	0	0	0	32323000	14093000	18230000	75074000	30433000	44641000	975	3173	925	5685;5686;5687;5688	7634	7634			1	
ADGQVAELLLR	0	Acetyl (Protein N-term)	1225.6667	0.6666512	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.638	94.294	2	1.233E-34	85805	160511_QHF_FH_JSI11i_1	239.39	223.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	976	5502	926	5689;5690;5691;5692	7635;7636;7637;7638;7639;7640;7641;7642	7636			8	
ADGTATAPPPR	0	Unmodified	1052.5251	0.52507234	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	1	3	2	10.214	6.8783	2	1.7669E-29	6680	160511_QHF_FH_JSI12i_1	185.81	146.79			1.01	1.0391	6.1712	7	0	Median	1.2036	0.99344	NaN	1	0	Median	0.89449	1.0497	NaN	1	0	Median	1.1071	1.0654	10.234	3	0	Median	0.97913	1.0306	1.1512	2	0	Median	530100000	251480000	278630000	112750000	49901000	62846000	146560000	75553000	71002000	137600000	60299000	77302000	133200000	65723000	67478000	977	3290	927	5693;5694;5695;5696;5697;5698;5699	7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653	7647			11	
ADGVPVYLK	1	Unmodified	960.52803	0.52803245	173	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	45.386	44.452	2	0.00053696	39376	160511_QHF_FH_JSI9i_1	83.206	58.283			1.3241	1.2242	29.007	2	1	Median	1.2217	0.99716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4351	1.5029	NaN	1	0	Median	282190000	130370000	151820000	126410000	57805000	68604000	0	0	0	0	0	0	155780000	72566000	83217000	978	173	928	5700;5701;5702	7654;7655;7656	7656			3	
ADGVVEGIDVNGPK	1	Unmodified	1368.6885	0.68850885	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.612	46.933	2	1.6467E-06	42633	160511_QHF_FH_JSI12i_1	132.32	110.63			0.93444	0.92379	12.088	4	1	Linear	0.91905	0.75452	NaN	1	1	Median	0.68382	0.80596	NaN	1	0	Median	0.9501	0.94207	NaN	1	0	Median	0.95418	0.96903	NaN	1	0	Median	456820000	259190000	197630000	122780000	74655000	48129000	109080000	65738000	43338000	111630000	56960000	54673000	113330000	61838000	51490000	979	618	929	5703;5704;5705;5706	7657;7658;7659;7660	7658			4	
ADGYEPPVQESV	0	Unmodified	1289.5776	0.57756142	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	5.08	3			3	1					1	2	2	2	54.307	48.638	2	1.3107E-05	43662	160511_QHF_FH_JSI9i_1	115.86	106.08			0.92153	0.98074	6.9379	7	0	Median	1.3355	1.0855	NaN	1	0	Median	0.81211	0.94947	6.6505	2	0	Median	0.9508	0.92503	4.7291	2	0	Median	0.93231	1.0083	3.9135	2	0	Median	1942500000	989360000	953120000	629620000	281650000	347970000	477440000	265230000	212210000	822140000	435820000	386330000	13273000	6655100	6618200	980	1948	930	5707;5708;5709;5710;5711;5712;5713	7661;7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674	7668			14	
ADGYNQPDSK	1	Unmodified	1093.4676	0.46761704	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	8.9332	4.4393	2	1.7599E-26	5621	160511_QHF_FH_JSI12i_1	196.52	165.29			0.97777	0.97973	19.823	10	0	Median	0.99863	0.83603	NaN	1	0	Median	1.2073	1.4349	19.306	3	0	Plateau	1.0651	1.0175	4.8411	3	0	Median	0.87058	0.93177	12.014	3	0	Plateau	1539800000	757330000	782440000	346100000	164290000	181810000	446570000	207920000	238650000	370840000	180180000	190660000	376270000	204940000	171320000	981	423;326	931	5714;5715;5716;5717;5718;5719;5720;5721;5722;5723	7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686	7677			12	
ADGYNQPDSKR	1	Acetyl (K)	1291.5793	0.57929275	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	1	0	0	1			By MS/MS		13	0						1						1		17.575	10.178	2	0.017852	7547	160513_QHF_FH_JSI11Kac_3	62.303	53.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	968600	968600	0	0	0	0	0	0	0	968600	968600	0	0	0	0	982	423;326	932	5724	7687	7687	166		1	
ADGYVLEGK	1	Unmodified	950.47091	0.4709115	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	5.88	4		2			4	2			3	3	3	3	29.158	23.198	2	8.6107E-11	6044	160513_QHF_FH_JSI9Kac_3	147.51	114.67			1.098	1.106	14.97	11	1	Median	1.098	0.91964	18.132	3	1	Median	1.0059	1.2043	21.838	2	0	Median	1.1988	1.1662	4.7836	3	0	Median	1.0815	1.1402	7.137	3	0	Plateau	11968000000	5878400000	6089200000	2805800000	1433400000	1372400000	2792400000	1380900000	1411400000	2953800000	1331900000	1621900000	3415600000	1732100000	1683500000	983	1985	933	5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736	7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713	7702			26	
ADHDFVVQEDFMK	1	Unmodified	1579.6977	0.69769333	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	3	3	1	59.616	58.81	2;3	3.1889E-22	50928	160511_QHF_FH_JSI11i_2	176.78	161.19			0.93569	0.96591	12.966	8	0	Median	1.0036	0.85208	9.354	2	0	Median	0.92572	0.90622	12.858	3	0	Plateau	0.93364	0.96591	2.7517	2	0	Median	1.0214	1.1492	NaN	1	0	Median	750860000	384300000	366570000	121420000	64059000	57360000	248240000	141410000	106840000	223630000	111010000	112630000	157560000	67825000	89740000	984	2006	934	5737;5738;5739;5740;5741;5742;5743;5744;5745	7714;7715;7716;7717;7718;7719;7720;7721;7722;7723	7717			10	
ADHEQQIK	1	Unmodified	967.47231	0.47230849	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.738	4.5439	2	0.0016803	2278	160511_QHF_FH_JSI11i_2	99.7	2.2698			0.70645	0.71369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70645	0.71369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89102000	54977000	34125000	0	0	0	0	0	0	89102000	54977000	34125000	0	0	0	985	5720	935	5746	7724	7724			1	
ADHGEPIGR	0	Unmodified	950.45699	0.45699277	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.12	8	8	6				3	4	3	7	8	8	9	6.9553	4.1165	2;3	6.0307E-12	4165	160511_QHF_FH_JSI11i_3	167.24	129			0.98566	1.0176	9.2285	32	0	Median	1.211	1.0244	11.815	7	0	Median	0.82894	0.96875	8.2063	8	0	Median	1.1014	1.0777	5.2101	8	0	Median	0.97234	1.027	7.801	9	0	Median	56535000000	27365000000	29169000000	7765100000	3574100000	4191000000	9958600000	5153900000	4804800000	19948000000	9429500000	10518000000	18863000000	9207900000	9655400000	986	898	936	5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778	7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774;7775;7776;7777	7728			53	
ADHQPLTEASYVNLPTIALCNTDSPLR	0	Unmodified	2995.4709	0.47093486	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	1	3	3	94.602	94.318	3	7.2183E-42	84010	160511_QHF_FH_JSI11i_3	176.14	173.82			1.1625	1.2796	12.731	8	0	Median	1.5354	1.3124	NaN	1	0	Median	1.0621	1.2976	NaN	1	0	Median	1.056	1.0385	1.1718	3	0	Plateau	1.2998	1.3935	5.6399	3	0	Plateau	1583500000	692420000	891060000	115120000	48829000	66289000	202380000	88132000	114250000	593870000	282780000	311080000	672110000	272680000	399440000	987	917	937	5779;5780;5781;5782;5783;5784;5785;5786	7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796;7797;7798;7799	7780			22	
ADHSFSDGVPSDSVEAAK	1	Acetyl (Protein N-term)	1859.8174	0.81735077	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.37	5.67	10				6	3				4	4	4	7	50.835	46.413	2;3	1.1876E-99	42196	160511_QHF_FH_JSI11i_1	155.08	145.65			0.98222	0.98667	47.199	13	1	Median	1.1687	0.9644	3.2284	2	0	Median	0.90034	1.0753	3.2581	3	0	Median	0.9199	0.88059	3.4205	3	0	Plateau	0.98222	1.0321	76.726	5	1	Median	4198800000	2059000000	2139800000	905910000	397530000	508380000	987860000	527440000	460410000	1070200000	525170000	545020000	1234900000	608860000	626040000	988	4309	938	5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805	7800;7801;7802;7803;7804;7805;7806;7807;7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820;7821;7822	7801			23	
ADHTLSSLEPAYSAK	1	Unmodified	1588.7733	0.77330111	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	41.846	40.882	2;3	1.7309E-15	35041	160511_QHF_FH_JSI11i_2	168.02	139.29			0.94833	0.93764	23.724	7	2	Median	0.95166	0.8306	17.144	2	0	Median	0.47393	0.57627	NaN	1	0	Median	0.94236	0.93682	9.8935	2	1	Median	1.0014	1.104	4.6655	2	1	Median	643620000	339430000	304200000	145830000	77764000	68070000	36336000	22056000	14280000	262070000	132930000	129150000	199380000	106680000	92699000	989	2992	939	5806;5807;5808;5809;5810;5811;5812;5813	7823;7824;7825;7826;7827;7828;7829;7830;7831;7832;7833;7834	7830			12	
ADIALIK	1	Unmodified	742.45889	0.45889025	3878	Q92743	HTRA1	Serine protease HTRA1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.148	41.687	2	0.041102	37426	160511_QHF_FH_JSI10i_1	46.835	21.009			1.0746	1.2249	36.491	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.8555	1.0054	NaN	1	0	Median	0.69429	0.6658	NaN	1	1	Median	1.3498	1.3784	NaN	1	0	Median	85670000	41328000	44342000	0	0	0	28256000	16159000	12096000	25663000	10489000	15175000	31751000	14680000	17071000	990	3878	940	5814;5815;5816	7835;7836;7837	7837			3	
ADIDLTK	1	Unmodified	774.41233	0.41233399	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.397	25.372	2	0.004105	22676	160511_QHF_FH_JSI12i_1	100.19	50.83			1.075	1.1355	12.793	7	0	Median	1.3614	1.092	NaN	1	0	Median	1.0188	1.2036	8.7529	2	0	Median	1.3586	1.3338	15.537	2	0	Median	0.98091	1.0644	9.1411	2	0	Median	5938300000	2868800000	3069500000	1261100000	458150000	802980000	1573400000	738620000	834730000	1277200000	616680000	660490000	1826600000	1055300000	771280000	991	1993	941	5817;5818;5819;5820;5821;5822;5823	7838;7839;7840;7841;7842;7843;7844;7845;7846;7847;7848;7849;7850	7840			13	
ADIEISGPK	1	Unmodified	928.48656	0.48656157	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	36.405	31.615	2	3.6579E-05	28240	160511_QHF_FH_JSI12i_1	99.442	67.087			1.2335	1.1911	21.421	6	0	Median	1.4267	1.1688	NaN	1	0	Median	0.75014	0.88813	NaN	1	0	Median	1.4745	1.4396	24.127	2	0	Median	1.1618	1.2348	11.612	2	0	Median	826400000	313270000	513130000	376790000	111820000	264980000	2903800	1517700	1386000	253320000	113660000	139660000	193380000	86274000	107110000	992	2286	942	5824;5825;5826;5827;5828;5829	7851;7852;7853;7854;7855;7856;7857;7858	7851			8	
ADIEMPFDPSK	1	Unmodified	1248.5696	0.56963927	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	69.27	66.051	2	7.194E-06	59888	160511_QHF_FH_JSI12i_1	109.83	81.621			0.9435	0.91075	13.382	6	3	Median	1.108	0.92018	NaN	1	1	Median	0.70208	0.81759	0.7992	2	1	Median	0.93753	0.90142	NaN	1	1	Median	1.0128	1.0835	9.2442	2	0	Median	1263200000	679490000	583750000	326470000	148950000	177520000	340330000	213400000	126920000	331200000	176350000	154850000	265240000	140790000	124450000	993	512	943	5830;5831;5832;5833;5834;5835	7859;7860;7861;7862;7863;7864;7865;7866	7860			8	
ADIFMFDEPSSYLDVK	1	Unmodified	1875.8601	0.86006721	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	101.15	101.07	2	7.5036E-22	91769	160511_QHF_FH_JSI11i_1	214.81	182.75			1.1412	1.1526	20.911	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2023	1.4085	NaN	1	0	Median	0.9541	0.9272	NaN	1	0	Median	1.1412	1.1526	NaN	1	1	Median	349120000	163640000	185470000	0	0	0	135570000	62664000	72904000	98921000	51628000	47293000	114630000	49352000	65277000	994	1945	944	5836;5837;5838	7867;7868;7869;7870	7867			4	
ADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELK	1	Unmodified	3617.7175	0.71752415	126	O00401	WASL	Neural Wiskott-Aldrich syndrome protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	100.52	100.5	4	1.0512E-15	89452	160511_QHF_FH_JSI11i_3	72.292	62.409			0.86649	0.92136	10.969	3	1	Median	NaN	NaN	NaN	0	0	Median	0.76601	0.92136	NaN	1	1	Median	1.1246	1.0801	NaN	1	0	Median	0.86649	0.8752	NaN	1	0	Median	188220000	108890000	79333000	0	0	0	25642000	19476000	6166600	55110000	28519000	26591000	107470000	60892000	46576000	995	126	945	5839;5840;5841	7871;7872;7873;7874;7875;7876	7872			6	
ADIGVAMGIAGSDVSK	1	Unmodified	1489.7446	0.74464352	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	63.584	63.08	3	0.045378	57056	160511_QHF_FH_JSI10i_1	37.083	31.699			1.0147	1.0802	7.0122	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99722	1.1351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0324	1.0279	NaN	1	0	Median	37406000	19407000	17998000	0	0	0	21212000	12364000	8847900	0	0	0	16194000	7043600	9150400	996	821;1032	946	5842;5843	7877	7877			0	
ADIIYPGHGPVIHNAEAK	1	Unmodified	1900.9795	0.97954591	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							3	1	4	5	41.334	40.686	2;3;4	8.0832E-17	34561	160511_QHF_FH_JSI12i_3	132.51	116.62			0.91572	0.97568	13.078	13	3	Median	1.0885	0.91968	21.969	3	2	Median	0.89826	1.1266	NaN	1	0	Median	0.87962	0.92302	14.624	4	0	Linear	0.90273	0.97568	6.699	5	1	Median	2033700000	1138200000	895520000	191040000	93474000	97568000	97259000	55854000	41405000	679990000	378760000	301230000	1065500000	610140000	455320000	997	2858	947	5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856	7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893	7891			16	
ADILEDK	1	Unmodified	802.40725	0.40724861	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				2	2	3	2	24.998	19.965	2	8.0007E-05	13417	160513_QHF_FH_JSI11Kac_3	121.99	64.708			0.88653	0.9485	46.934	9	3	Median	0.94457	0.75455	29.338	2	0	Median	0.8539	1.0106	4.4147	2	0	Median	0.95798	0.9485	81.736	3	2	Median	0.78682	0.85153	49.778	2	1	Median	5561900000	2418900000	3143000000	1149600000	503450000	646140000	981160000	441890000	539270000	1996600000	814560000	1182000000	1434600000	658970000	775580000	998	1765	948	5857;5858;5859;5860;5861;5862;5863;5864;5865	7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910	7900			17	
ADILEDKDGK	2	Acetyl (K)	1144.5612	0.56118307	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.7	0.471					1	2					2	1		45.048	35.92	2	0.00034904	19362	160513_QHF_FH_JSI10Kac_3	93.096	76.893			0.63859	0.68309	32.61	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73423	0.86024	NaN	1	0	Median	0.55541	0.54242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12500000	7401500	5098200	0	0	0	5850100	3285800	2564400	6649500	4115700	2533800	0	0	0	999	1765	949	5866;5867;5868	7911;7912;7913;7914	7913	1779		4	
ADILQVGLR	0	Unmodified	983.57638	0.57637963	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.3	2	4	2				3	4		2	5	3	5	64.039	58.506	2	1.2546E-06	51760	160511_QHF_FH_JSI10i_2	133.55	107.81			1.0367	1.0339	33.344	15	4	Median	1.0946	0.91085	6.3765	2	0	Median	0.79113	0.98236	39.488	5	1	Median	1.0367	1.0464	28.869	3	1	Plateau	1.0145	1.1197	36.739	5	2	Median	1089200000	548750000	540430000	196800000	90262000	106540000	301710000	167390000	134320000	317340000	157820000	159530000	273330000	133290000	140050000	1000	4619	950	5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883	7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928;7929;7930;7931	7930			15	
ADINTKWAATR	1	Acetyl (K)	1287.6571	0.65714914	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.759						2	3	7		2	4	3	3	55.527	45.108	2	6.7814E-58	24938	160513_QHF_FH_JSI10Kac_4	220.1	137.09			0.75686	0.82237	120.83	11	5	Median	0.50581	0.42026	NaN	1	1	Median	0.90281	1.0619	131.05	4	2	Median	0.53467	0.52903	197.76	3	2	Median	0.75686	0.82237	14.756	3	0	Median	242060000	147960000	94104000	3061500	1994800	1066700	64422000	34356000	30066000	110980000	76322000	34656000	63598000	35282000	28316000	1001	1720	951	5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894;5895	7932;7933;7934;7935;7936;7937;7938;7939;7940;7941;7942;7943;7944;7945	7935	1726		14	
ADIQLLVYTIDDLIDK	1	Unmodified	1846.9928	0.99279594	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	103.6	103.5	2;3	9.3036E-08	91243	160511_QHF_FH_JSI11i_2	137.68	122.29			0.9611	1.0038	24.834	5	2	Median	1.5697	1.3514	NaN	1	1	Median	0.9611	1.1451	NaN	1	0	Median	0.8744	0.84544	24.276	2	1	Median	0.78816	0.85975	NaN	1	0	Median	79984000	41891000	38093000	11777000	4474700	7302400	7064400	4592600	2471700	42296000	21976000	20320000	18847000	10847000	7999000	1002	5002	952	5896;5897;5898;5899;5900	7946;7947;7948;7949;7950;7951;7952	7951			7	
ADIQTER	0	Acetyl (Protein N-term)	873.41921	0.41921028	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	5.28	4			2	3					1	3	2	3	21.726	17.457	2	0.0020492	15702	160511_QHF_FH_JSI12i_1	89.55	54.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1003	1996	953	5901;5902;5903;5904;5905;5906;5907;5908;5909	7953;7954;7955;7956;7957;7958;7959;7960;7961	7955			9	
ADIQTERAYQK	1	Acetyl (Protein N-term)	1363.6732	0.67319314	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			27.32	27.008	2	0.00074248	23900	160511_QHF_FH_JSI10i_1	71.524	40.102			0.25244	0.29551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25244	0.29551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92521000	64164000	28357000	0	0	0	92521000	64164000	28357000	0	0	0	0	0	0	1004	1996	954	5910	7962	7962			1	
ADISLDELIRK	1	Acetyl (Protein N-term)	1313.7191	0.7190807	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS		By MS/MS	1.17	0.373	5	1								1	2		3	86.308	85.792	2	5.7673E-06	77805	160511_QHF_FH_JSI10i_1	105.98	93.448			0.60506	0.59604	169.89	6	6	Median	0.89992	0.73768	NaN	1	1	Median	1.048	1.2412	133.89	2	2	Median	NaN	NaN	NaN	0	0	Median	0.16311	0.17268	246.44	3	3	Median	180580000	101430000	79157000	24177000	13047000	11130000	80482000	46503000	33979000	0	0	0	75925000	41877000	34047000	1005	4538	955	5911;5912;5913;5914;5915;5916	7963;7964;7965;7966;7967;7968	7966			6	
ADIWSFGITAIELATGAAPYHK	1	Unmodified	2331.1899	0.18993262	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	1	1	3	99.836	92.367	3;4	5.6665E-127	49449	160513_QHF_FH_JSI12Kac_6	258.87	241.72			0.91306	0.93578	19.8	7	1	Median	1.0955	0.94651	1.8966	2	0	Median	0.78651	0.93578	NaN	1	0	Median	1.0857	1.0202	NaN	1	0	Median	0.87891	0.92531	29.212	3	1	Median	1692200000	883330000	808860000	418320000	210880000	207440000	328290000	163560000	164730000	380910000	199900000	181010000	564660000	308990000	255670000	1006	721	956	5917;5918;5919;5920;5921;5922;5923	7969;7970;7971;7972;7973;7974;7975;7976;7977;7978;7979	7976			11	
ADIWSLGITAIELAK	1	Unmodified	1599.8872	0.88720866	5206	Q9P289;O00506	STK26;STK25	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.41	6.99		8							9	4	5	4	4	99.927	95.582	2;3	1.3424E-65	90269	160511_QHF_FH_JSI9i_2	264.84	230.88			0.94712	0.97551	15.353	17	4	Median	1.1304	0.96094	10.303	4	1	Median	0.69542	0.81331	7.9162	5	2	Median	1.0386	1.0286	17.438	4	1	Median	0.9381	1.176	9.3725	4	0	Linear	3084100000	1576600000	1507500000	599440000	279640000	319810000	775800000	458600000	317210000	1061100000	511820000	549260000	647820000	326550000	321270000	1007	5206	957	5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940	7980;7981;7982;7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000;8001;8002;8003;8004;8005;8006;8007	7988			27	
ADKDYHFK	2	Acetyl (K)	1064.4927	0.49270958	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.63							10	21	5	4	14	11	7	30.208	21.032	2;3	1.1802E-06	12694	160513_QHF_FH_JSI11Kac_5	138.98	117.68			0.8445	0.88461	129.93	34	4	Median	1.0457	0.88461	179.26	4	1	Median	0.95696	1.1283	13.898	12	0	Median	0.34098	0.33524	79.249	11	2	Median	0.54772	0.59853	193.7	7	1	Median	1637200000	1079000000	558110000	52710000	23252000	29458000	256150000	120030000	136120000	845310000	596410000	248900000	482980000	339340000	143640000	1008	857	958	5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968;5969;5970;5971;5972;5973;5974;5975;5976	8008;8009;8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054;8055;8056;8057;8058;8059;8060;8061	8037	539;540		51	
ADKEAAFDDAVEER	1	Acetyl (K);Acetyl (Protein N-term)	1648.7217	0.72165947	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11	0				2							1		1	76.738	68.234	2	7.8439E-05	26770	160513_QHF_FH_JSI12Kacf_1	111.79	104.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1009	2283	959	5977;5978	8062;8063	8062	2381		2	
ADKLAEEHSS	1	Acetyl (K)	1127.5095	0.50948185	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	19.695	12.509	2	9.3825E-06	6799	160513_QHF_FH_JSI10Kac_2	112.89	104.47			0.85518	0.92188	31.597	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89494	1.0636	7.2565	2	0	Median	0.54312	0.50092	NaN	1	0	Median	0.80133	0.84389	12.5	2	0	Median	42535000	22172000	20364000	0	0	0	19644000	10253000	9391100	5874000	2085400	3788600	17017000	9833400	7183900	1010	851	960	5979;5980;5981;5982;5983;5984	8064;8065;8066;8067;8068;8069;8070;8071	8066	507		8	
ADKMDMSLDDIIK	2	Acetyl (Protein N-term)	1535.7211	0.72113089	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				87.752	86.929	2	0.01369	77314	160511_QHF_FH_JSI9i_1	44.612	34.607			0.38547	0.31164	NaN	1	1	Median	0.38547	0.31164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10836000	7958300	2877900	10836000	7958300	2877900	0	0	0	0	0	0	0	0	0	1011	3337	961	5985	8072	8072			1	
ADKPDMGEIASFDK	2	Acetyl (Protein N-term)	1564.7079	0.70792366	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.96	4.78	12	4	4			3	2			7	6	6	6	62.234	59.641	2;3	1.1209E-23	6908	160513_QHF_FH_JSI9Kac_3	79.82	55.438		+	0.95091	1.0112	281.58	23	7	Median	1.0121	0.83895	319.61	6	1	Median	0.87457	1.0344	315.09	6	2	Median	1.0711	1.0341	339.05	6	2	Median	0.92634	1.0112	153.74	5	2	Median	50962000000	29588000000	21373000000	12726000000	5789800000	6936500000	13686000000	7772200000	5913600000	15963000000	8217300000	7745800000	8586600000	7809100000	777580000	1012	2064	962	5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002;6003;6004;6005;6006;6007;6008;6009;6010	8073;8074;8075;8076;8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087;8088;8089;8090;8091;8092;8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122;8123;8124	8101			52	
ADKPDMGEIASFDK	2	Acetyl (Protein N-term);Oxidation (M)	1580.7028	0.70283829	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	47.685	45.313	2	2.736E-05	40835	160511_QHF_FH_JSI10i_1	69.451	46.131		+	0.97112	0.93869	11.848	5	0	Median	1.0464	0.84815	NaN	1	0	Median	0.82896	0.95705	NaN	1	0	Median	0.97112	0.92932	NaN	1	0	Median	0.96964	1.0482	15.602	2	0	Median	4771800000	2390800000	2381000000	889550000	376500000	513060000	1259100000	684670000	574450000	1055500000	557090000	498430000	1567600000	772550000	795080000	1013	2064	962	6011;6012;6013;6014;6015	8125;8126;8127;8128;8129;8130;8131;8132;8133;8134;8135;8136;8137	8133		1727	13	
ADKPDMGEIASFDK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1622.7134	0.71340297	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						1	1	2	71.445	61.988	2	0.00022281	27292	160513_QHF_FH_JSI12Kac_2	53.448	39.542		+	1.0332	1.0852	39.817	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3632	1.5351	NaN	1	0	Median	0.60015	0.59505	NaN	1	0	Median	1.0332	1.0852	10.202	2	0	Median	20622000	10346000	10276000	0	0	0	3417800	1462000	1955800	1836400	1116900	719430	15368000	7767200	7600800	1014	2064	962	6016;6017;6018;6019	8138;8139;8140;8141;8142;8143	8143	2133;2134	1727	6	
ADKPDMGEIASFDK	2	Acetyl (K);Acetyl (Protein N-term)	1606.7185	0.71848835	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11.3	0.471				2	1						1		2	82.379	74.231	2	0.00043061	29145	160513_QHF_FH_JSI10Kac_1	56.783	50.093		+	0.96924	1.0678	2.8442	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95558	1.084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99765	1.0467	2.8279	2	0	Median	11903000	6171800	5731500	0	0	0	3993100	1956900	2036200	0	0	0	7910100	4214900	3695300	1015	2064	962	6020;6021;6022	8144;8145;8146;8147;8148	8146	2133;2134		5	
ADKPDMGEIASFDK	2	Acetyl (K)	1564.7079	0.70792366	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	72.03	62.714	2	0.012247	27579	160513_QHF_FH_JSI12Kac_2	54.343	38.771		+	1.6731	1.7745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6731	1.7745	NaN	1	0	Median	19168000	9305300	9862700	0	0	0	0	0	0	0	0	0	19168000	9305300	9862700	1016	2064	962	6023	8149	8149	2133;2134		1	
ADKPDMGEIASFDKAK	3	2 Acetyl (K);Oxidation (M)	1821.8455	0.84547978	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	2	0	1	2		By MS/MS	By MS/MS	By MS/MS	12.4	0.979				2	5	2	2				4	3	4	62.194	52.504	3	4.7835E-05	28074	160513_QHF_FH_JSI10Kac_4	88.133	70.037		+	0.53084	0.54859	96.781	10	0	Median	NaN	NaN	NaN	0	0	Median	1.6014	1.9088	12.751	4	0	Linear	0.41504	0.40522	48.567	2	0	Median	0.4032	0.4284	45.765	4	0	Median	527350000	295310000	232040000	0	0	0	191120000	64070000	127050000	155140000	104070000	51067000	181090000	127170000	53917000	1017	2064	963	6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034	8150;8151;8152;8153;8154;8155;8156;8157;8158;8159;8160;8161;8162;8163;8164	8152	2133;2134	1727	15	
ADKPDMGEIASFDKAK	3	2 Acetyl (K)	1805.8506	0.85056516	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.943					1	3	1	1		1	1	2	2	66.422	55.688	2;3	3.5293E-07	34565	160513_QHF_FH_JSI10Kac_4	105.39	99.091		+	0.48991	0.50734	140.84	6	1	Median	17.73	14.559	NaN	1	1	Median	1.7439	2.0623	NaN	1	0	Median	0.46719	0.46315	12.448	2	0	Median	0.44674	0.48539	6.6952	2	0	Median	274200000	148120000	126080000	48555000	1027600	47528000	13744000	4679500	9064200	31992000	22153000	9839600	179910000	120260000	59649000	1018	2064	963	6035;6036;6037;6038;6039;6040	8165;8166;8167;8168;8169	8165	2133;2134		5	
ADKPDMGEIASFDKAK	3	Acetyl (K);Acetyl (Protein N-term)	1805.8506	0.85056516	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	1	0	2		By MS/MS	By MS/MS	By MS/MS	12.9	0.862					4	6	1	1			5	2	5	75.593	66.791	2;3	3.2661E-12	33451	160513_QHF_FH_JSI12Kac_3	64.55	64.55		+	0.47088	0.50892	122.29	11	1	Median	NaN	NaN	NaN	0	0	Median	1.7928	2.1494	9.3265	4	0	Median	0.4326	0.42704	0.96798	2	0	Median	0.42384	0.46295	115.14	5	1	Median	622800000	386060000	236740000	0	0	0	151120000	50141000	100980000	36934000	25733000	11201000	434740000	310190000	124550000	1019	2064	963	6041;6042;6043;6044;6045;6046;6047;6048;6049;6050;6051;6052	8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180;8181;8182;8183	8178	2133;2134		14	
ADKPDMGEIASFDKAK	3	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1821.8455	0.84547978	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	1	1	2			By MS/MS	By MS/MS	12.8	1.21				1	1	3		1				3	3	62.199	52.511	2;3	7.5939E-05	27537	160513_QHF_FH_JSI12Kac_3	35.329	17.412		+	0.47556	0.50482	89.537	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31184	0.30833	79.215	3	1	Plateau	0.19983	0.21278	122.18	2	1	Median	339690000	258540000	81150000	0	0	0	0	0	0	132060000	110560000	21508000	207620000	147980000	59642000	1020	2064	963	6053;6054;6055;6056;6057;6058	8184;8185;8186;8187	8185	2133;2134	1727	4	
ADLAAVEAK	1	Unmodified	886.476	0.47599688	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.287	25.264	2	8.1577E-05	22163	160511_QHF_FH_JSI10i_1	95.358	47.615			0.86478	0.97643	10.792	7	1	Median	1.2245	0.9961	NaN	1	0	Median	0.78431	0.92916	7.0173	2	1	Median	1.0228	0.98953	23.941	2	0	Median	0.88515	0.95724	4.8947	2	0	Median	1237700000	667450000	570280000	300570000	130840000	169730000	301620000	190580000	111040000	269940000	142810000	127130000	365600000	203220000	162380000	1021	2517	964	6059;6060;6061;6062;6063;6064;6065	8188;8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201	8195			14	
ADLAECNIK	1	Acetyl (Protein N-term)	1074.5016	0.5015597	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	45.832	45.18	2	0.0031239	41056	160511_QHF_FH_JSI12i_1	51.059	43.128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1022	1400	965	6066	8202	8202			1	
ADLAEEYSK	1	Unmodified	1024.4713	0.47130543	2071	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	27.891	23.913	2	8.9167E-05	20738	160511_QHF_FH_JSI9i_1	94.692	78.152			0.90526	0.96757	12.481	7	0	Median	1.1996	0.96757	NaN	1	0	Median	0.85849	1.0086	7.6089	2	0	Median	0.99884	0.97783	17.765	2	0	Median	0.9638	1.0236	22.982	2	0	Median	844900000	463120000	381780000	179490000	97439000	82048000	239450000	132660000	106790000	262470000	141160000	121310000	163500000	91865000	71636000	1023	2071	966	6067;6068;6069;6070;6071;6072;6073	8203;8204;8205;8206;8207;8208	8207			6	
ADLANEEK	1	Acetyl (Protein N-term)	930.42944	0.42944062	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	3			3						1	1	2	2	28.509	24.792	2	0.00060622	21862	160511_QHF_FH_JSI9i_1	74.255	42.966			1.164	1.127	12.368	4	0	Median	1.5195	1.2486	NaN	1	0	Median	0.84807	1.0106	NaN	1	0	Median	1.164	1.1334	15.31	2	0	Median	NaN	NaN	NaN	0	0	Median	191150000	97974000	93180000	70770000	36602000	34168000	60586000	32178000	28408000	59045000	29194000	29850000	753060	0	753060	1024	4759	967	6074;6075;6076;6077;6078;6079	8209;8210;8211;8212;8213;8214;8215	8212			6	
ADLATAPPHVTVVR	0	Unmodified	1445.7991	0.79906235	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.16		7	1					2		2	1	3	4	46.744	43.898	2;3	7.269E-05	37725	160511_QHF_FH_JSI11i_2	81.128	64.905			1.0273	1.0556	10.734	10	1	Median	1.3781	1.1727	10.009	2	0	Median	0.83559	1.0076	NaN	1	0	Median	1.0004	0.99273	8.3807	3	1	Median	1.0405	1.1086	8.6739	4	0	Median	788610000	404450000	384160000	209680000	91729000	117950000	156820000	87726000	69096000	195150000	100990000	94162000	226960000	124010000	102960000	1025	3506	968	6080;6081;6082;6083;6084;6085;6086;6087;6088;6089	8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227;8228	8222			12	
ADLDVSGPK	1	Unmodified	900.45526	0.45526144	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	5.46	8	2	4		6	7				6	8	6	7	26.962	22.126	2	9.8199E-09	20124	160511_QHF_FH_JSI9i_1	161.02	0			0.87301	0.93397	18.591	25	2	Median	1.0146	0.83697	17.657	5	1	Median	0.73504	0.86128	8.7623	8	0	Median	1.0555	1.0283	28.209	5	0	Median	0.96337	1.0222	14.229	7	1	Median	13872000000	6850800000	7021700000	3276400000	1449900000	1826500000	3372200000	1783700000	1588500000	2997400000	1481600000	1515800000	4226400000	2135600000	2090800000	1026	2286	969	6090;6091;6092;6093;6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116	8229;8230;8231;8232;8233;8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266;8267;8268;8269	8256			41	
ADLEAQR	0	Unmodified	801.39808	0.39808091	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	5.82	3	1				3				2	1	2	2	9.5746	6.2293	2	0.0082581	6391	160511_QHF_FH_JSI12i_1	84.244	19.44			1.1677	1.1327	15.52	7	0	Median	1.4503	1.2078	32.317	2	0	Median	1.0442	1.2449	NaN	1	0	Median	1.126	1.1028	3.7782	2	0	Median	1.0919	1.1741	16.064	2	0	Median	1361500000	617120000	744360000	529870000	215850000	314020000	8032300	5230400	2802000	429220000	201630000	227590000	394360000	194410000	199950000	1027	1938	970	6117;6118;6119;6120;6121;6122;6123	8270;8271;8272;8273;8274;8275;8276;8277	8273			8	
ADLEAQRDVTYEEAK	1	Unmodified	1736.8217	0.82170787	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	3.99	5	3					1			2	2	1	4	32.709	30.863	2;3	0.00014622	27636	160511_QHF_FH_JSI11i_1	77.562	66.3			1.1586	1.2619	9.7542	8	2	Median	1.5372	1.3028	0.39293	2	0	Median	1.0342	1.2304	7.6087	2	1	Median	1.1455	1.1135	NaN	1	0	Median	1.0625	1.112	14.694	3	1	Plateau	794260000	380780000	413480000	138550000	66091000	72460000	225890000	111420000	114470000	145050000	57152000	87900000	284770000	146120000	138650000	1028	1938	971	6124;6125;6126;6127;6128;6129;6130;6131;6132	8278;8279;8280;8281;8282;8283;8284;8285	8278			8	
ADLEEQLSDEEK	1	Acetyl (Protein N-term)	1446.6362	0.63619851	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	63.243	62.545	2	1.4777E-08	56917	160511_QHF_FH_JSI12i_1	109.66	103.36			1.4336	1.174	170.42	3	1	Plateau	1.4336	1.174	NaN	1	0	Median	21.045	24.679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.335	1.43	NaN	1	0	Median	139550000	43497000	96056000	54678000	21003000	33674000	40718000	1742000	38976000	0	0	0	44157000	20752000	23405000	1029	1606	972	6133;6134;6135	8286;8287;8288;8289;8290	8286			5	
ADLEGSLDSK	1	Unmodified	1033.4928	0.49276916	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.154	27.242	2	4.6309E-05	23585	160511_QHF_FH_JSI9i_1	93.667	46.092			1.3343	1.2377	23.223	2	0	Median	1.2617	1.0502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4111	1.4585	NaN	1	0	Median	160620000	74003000	86614000	87181000	44604000	42577000	0	0	0	0	0	0	73436000	29399000	44037000	1030	2610	973	6136;6137;6138;6139	8291;8292;8293;8294	8294			4	
ADLEMQIENLK	1	Unmodified	1302.649	0.64895222	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.217	65.616	2	8.1612E-30	59683	160511_QHF_FH_JSI12i_1	192.1	131.12		+	0.91465	0.85732	26.726	4	0	Median	0.88795	0.73271	NaN	1	0	Median	0.56626	0.68371	NaN	1	0	Median	1.2466	1.2071	NaN	1	0	Median	0.94215	1.0031	NaN	1	0	Median	981150000	554340000	426810000	155760000	78557000	77201000	289700000	208830000	80870000	282000000	132080000	149920000	253690000	134870000	118820000	1031	65	974	6140;6141;6142;6143	8295;8296;8297;8298;8299;8300;8301;8302	8298			8	
ADLEMQIENLK	1	Oxidation (M)	1318.6439	0.64386684	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	1	0				By MS/MS	1	0	1												1	51.162	50.496	2	0.005529	45616	160511_QHF_FH_JSI12i_1	55.531	32.459		+	0.95028	0.99642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95028	0.99642	NaN	1	0	Median	231950000	127080000	104860000	0	0	0	0	0	0	0	0	0	231950000	127080000	104860000	1032	65	974	6144	8303	8303		31	1	
ADLESLLQTPGGKPR	1	Unmodified	1580.8522	0.85222014	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	62.633	62.492	2;3	4.5293E-07	55484	160511_QHF_FH_JSI11i_3	99.215	83.326			0.81803	0.80629	0.80559	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85431	0.81089	NaN	1	0	Median	0.78329	0.80171	NaN	1	1	Median	180890000	100280000	80608000	0	0	0	0	0	0	130340000	74139000	56200000	50550000	26142000	24408000	1033	3375	975	6145;6146;6147	8304;8305;8306	8305			3	
ADLGVSGPK	1	Unmodified	842.44978	0.44978213	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	24.292	20.729	2	0.00016949	18183	160511_QHF_FH_JSI12i_1	87.639	48.848			1.0989	1.0837	12.662	5	0	Median	1.331	1.0837	NaN	1	0	Median	0.7493	0.87698	NaN	1	0	Median	1.1259	1.101	11.507	2	0	Median	1.0989	1.1808	NaN	1	0	Median	940940000	477680000	463260000	282820000	133630000	149190000	5473400	3779300	1694000	271270000	147600000	123670000	381380000	192680000	188710000	1034	2286	976	6148;6149;6150;6151;6152	8307;8308;8309;8310;8311	8309			5	
ADLHGAIISVTK	1	Unmodified	1223.6874	0.68738664	718	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	5.75	5.93		2	1						1	1		1	2	49.262	46.425	3	0.014345	39520	160511_QHF_FH_JSI12i_3	41.227	32.273			0.98393	1.0384	58.563	4	2	Median	0.48028	0.41023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92488	0.93903	NaN	1	0	Median	1.293	1.368	24.765	2	1	Median	73485000	38273000	35212000	8710000	5717000	2993000	0	0	0	19237000	12384000	6852500	45538000	20172000	25366000	1035	718	977	6153;6154;6155;6156	8312;8313;8314	8314			2	
ADLIAYLK	1	Unmodified	905.52222	0.52221879	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.13	4	8	4			3	4	6		7	9	6	7	70.25	64.982	1;2	5.1862E-07	35185	160513_QHF_FH_JSI11Kac_5	141.78	86.106			1.0753	1.1057	19.929	29	0	Median	1.2877	1.0501	35.712	7	0	Median	0.91203	1.1162	18.972	9	0	Median	1.0575	1.0936	3.1732	6	0	Linear	1.0362	1.1301	8.3662	7	0	Median	6917800000	3420400000	3497500000	1270900000	559160000	711780000	1891100000	1071900000	819150000	2059000000	926440000	1132600000	1696800000	862840000	833930000	1036	2143	978	6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185	8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362;8363;8364;8365;8366;8367;8368;8369;8370;8371;8372;8373;8374;8375;8376;8377;8378	8363			63	
ADLIAYLKK	2	Acetyl (K)	1075.6277	0.6277465	2143	P99999	CYCS	Cytochrome c	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	81.765	71.311	2	0.01706	37717	160513_QHF_FH_JSI11Kac_5	81.548	64.162			0.44753	0.44585	50.245	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81849	0.993	NaN	1	0	Median	0.44753	0.44585	NaN	1	0	Median	0.99669	1.1257	NaN	1	0	Median	36220000	23954000	12266000	0	0	0	6990100	4012400	2977800	22579000	16428000	6150700	6650800	3513700	3137100	1037	2143	979	6186;6187;6188	8379;8380	8379	2237		2	
ADLINNLGTIAK	1	Unmodified	1241.698	0.69795133	898;880;2870	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.28	6.15	7	4	4			6	6	4	1	7	8	9	8	69.573	63.766	2	1.2339E-64	58719	160511_QHF_FH_JSI10i_2	226.71	182.26			1.0283	0.99344	34.302	32	8	Median	1.1754	0.99087	59.266	7	0	Median	0.86683	0.9897	15.874	8	4	Median	0.91939	0.93921	26.239	9	2	Median	1.0162	1.0489	22.946	8	2	Median	112390000000	52818000000	59575000000	18587000000	8182400000	10405000000	29078000000	14651000000	14427000000	34072000000	15806000000	18266000000	30655000000	14178000000	16477000000	1038	898;880;2870	980	6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218;6219;6220	8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394;8395;8396;8397;8398;8399;8400;8401;8402;8403;8404;8405;8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416;8417;8418;8419;8420;8421;8422;8423;8424;8425;8426;8427;8428;8429;8430;8431;8432;8433;8434;8435;8436;8437;8438;8439;8440;8441;8442;8443;8444;8445;8446;8447;8448	8441			68	
ADLINNLGTIAKSGTK	2	Unmodified	1614.8941	0.89408495	898;880	P08238;P07900;Q14568	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	no	no	0	0	0	1				By MS/MS	3	0			1										1	62.407	62.126	3	6.9448E-05	53546	160511_QHF_FH_JSI12i_3	88.551	60.254			0.47301	0.4845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47301	0.4845	NaN	1	1	Median	428340000	280110000	148230000	0	0	0	0	0	0	0	0	0	428340000	280110000	148230000	1039	898;880	981	6221	8449	8449			1	
ADLIPYQDSPEGPDHSSASSGVPNPPK	1	Unmodified	2761.2831	0.28311732	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		58.211	57.789	3	4.3535E-08	52334	160511_QHF_FH_JSI11i_1	64.152	61.428			1.2529	1.223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2529	1.223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43542000	20077000	23465000	0	0	0	0	0	0	43542000	20077000	23465000	0	0	0	1040	3756	982	6222	8450	8450			1	
ADLISEDVQR	0	Unmodified	1144.5724	0.57241646	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	35.961	35.537	2	0.001546	32164	160511_QHF_FH_JSI12i_1	65.224	42.484			0.67434	0.66125	75.088	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.21	1.1245	NaN	1	0	Median	0.37581	0.38884	NaN	1	0	Median	140950000	94959000	45995000	0	0	0	0	0	0	68045000	39473000	28572000	72909000	55486000	17423000	1041	3900	983	6223;6224	8451;8452	8452			2	
ADLLGSILSSMEKPPSLGDQETR	1	Acetyl (Protein N-term)	2485.237	0.23701875	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	1	0	1	By matching		By matching	By MS/MS	2	0		3								1		1	1	103.13	103.02	3	7.1186E-17	88921	160511_QHF_FH_JSI12i_2	67.413	59.879			1.0698	1.2446	13.198	3	0	Plateau	1.4182	1.2446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0113	1.0072	NaN	1	0	Median	1.1316	1.2836	NaN	1	0	Median	131060000	57330000	73725000	27431000	11336000	16095000	0	0	0	51814000	23588000	28226000	51811000	22407000	29404000	1042	518	984	6225;6226;6227	8453	8453			1	
ADLLLSTQPGR	0	Unmodified	1169.6404	0.64043645	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	48.06	46.833	2	0.0033523	39993	160511_QHF_FH_JSI12i_2	68.893	32.559			0.58836	0.56217	12.107	2	1	Median	0.61039	0.51605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56713	0.61242	NaN	1	1	Median	93910000	57464000	36445000	54068000	29786000	24282000	0	0	0	0	0	0	39842000	27678000	12163000	1043	895	985	6228;6229	8454;8455	8454			1	
ADLLLSTQPGREEGSPLELER	0	Unmodified	2309.1863	0.18630381	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.02	3	9	5					1		3	4	5	6	73.048	71.745	2;3	1.2799E-35	63116	160511_QHF_FH_JSI11i_2	193.96	166.31			1.1462	1.1372	18.735	17	7	Median	1.5492	1.2754	9.017	3	1	Median	1.1341	1.3164	28.29	4	2	Median	1.1024	1.1673	6.9537	4	1	Linear	1.0305	1.0887	13.945	6	3	Median	15423000000	6643700000	8779300000	2898500000	1026900000	1871600000	3511400000	1533900000	1977500000	2982600000	1301200000	1681400000	6030500000	2781700000	3248800000	1044	895	986	6230;6231;6232;6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247	8456;8457;8458;8459;8460;8461;8462;8463;8464;8465;8466;8467;8468;8469;8470;8471;8472;8473;8474;8475;8476;8477;8478;8479;8480	8468			25	
ADLLLSTQPGREEGSPLELERLK	1	Unmodified	2550.3653	0.3653308	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			76.236	75.143	4	0.00097747	66240	160511_QHF_FH_JSI9i_2	46.578	34.612			0.32536	0.38428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32536	0.38428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44320000	16345000	27975000	25034000	0	25034000	19287000	16345000	2941300	0	0	0	0	0	0	1045	895	987	6248;6249	8481;8482	8482			2	
ADLLTAEQR	0	Unmodified	1015.5298	0.52982336	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.706	28.432	2	0.0124	24748	160511_QHF_FH_JSI9i_1	47.603	22.044			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1046	4621	988	6250	8483	8483			1	
ADLNIILSSPEQLELFLLAQQK	1	Unmodified	2482.3683	0.36829092	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.782	93.062	3	7.9535E-05	54508	160513_QHF_FH_JSI10Kac_6	105.06	91.334			0.67613	0.80891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67613	0.80891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96722000	50370000	46353000	0	0	0	96722000	50370000	46353000	0	0	0	0	0	0	1047	4361	989	6251	8484	8484			1	
ADLNQGIGEPQSPSR	0	Unmodified	1567.759	0.75904803	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	2	3	36.549	32.381	2	2.2391E-21	28952	160511_QHF_FH_JSI10i_1	175.21	145.55			1.0723	0.96662	25.255	7	1	Median	1.1474	0.95245	NaN	1	0	Median	1.0608	1.2421	35.466	2	0	Median	1.1294	1.0828	11.679	2	0	Median	0.75611	0.79904	18.662	2	1	Median	259870000	127650000	132220000	57281000	27052000	30229000	71310000	36864000	34446000	70374000	33976000	36398000	60908000	29761000	31148000	1048	3998	990	6252;6253;6254;6255;6256;6257;6258;6259	8485;8486;8487;8488;8489;8490;8491;8492	8488			8	
ADLNQGIGEPQSPSRR	0	Unmodified	1723.8602	0.86015906	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27		3	2					4		2	3	3	1	30.703	25.466	3	0.00012882	22508	160511_QHF_FH_JSI10i_2	66.965	50.826			1.0505	1.1004	16.286	8	0	Median	1.2968	1.1123	4.6742	2	0	Median	0.80979	0.92752	14.078	3	0	Median	1.3126	1.2939	19.761	2	0	Median	0.93641	1.0005	NaN	1	0	Median	228460000	110560000	117900000	60296000	25227000	35069000	134590000	69310000	65275000	29885000	14441000	15444000	3696300	1580600	2115700	1049	3998	991	6260;6261;6262;6263;6264;6265;6266;6267;6268	8493;8494;8495;8496;8497;8498;8499;8500;8501	8500			7	
ADLPEGVAVSGPSPAEFCR	0	Unmodified	1957.9204	0.92037606	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.109	69.738	2	0.00022909	63309	160511_QHF_FH_JSI11i_1	84.468	68.712			0.69462	0.66909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69462	0.66909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12168000	7502200	4665400	0	0	0	0	0	0	12168000	7502200	4665400	0	0	0	1050	3441	992	6269	8502	8502			1	
ADLPEGVAVSGPSPAEFCRK	1	Unmodified	2086.0153	0.015339073	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	61.877	61.736	3	0.00037927	54863	160511_QHF_FH_JSI11i_3	53.342	38.452			2.4561	2.4037	29.035	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0592	1.9576	NaN	1	1	Median	2.9294	2.9515	NaN	1	1	Median	208310000	61466000	146840000	0	0	0	0	0	0	126380000	33547000	92830000	81932000	27920000	54012000	1051	3441	993	6270;6271	8503;8504;8505	8504			3	
ADLQAAAVR	0	Unmodified	913.49813	0.49812931	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	21.639	20.795	2	0.00059224	18276	160511_QHF_FH_JSI12i_1	82.279	53.75			1.1151	1.0278	25.005	2	1	Median	1.4917	1.2266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83355	0.86127	NaN	1	1	Median	281120000	140480000	140640000	110580000	44199000	66384000	0	0	0	0	0	0	170540000	96285000	74253000	1052	4428	994	6272;6273;6274;6275	8506;8507;8508;8509	8508			4	
ADLRDNYSPGWK	1	Unmodified	1420.6735	0.67352749	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	3	2	38.259	37.786	2;3	9.4095E-05	33139	160511_QHF_FH_JSI11i_3	79.089	69.037			1.1444	1.1564	23.304	7	3	Median	1.4261	1.1564	NaN	1	0	Median	1.0954	1.2523	NaN	1	0	Median	1.4596	1.3795	24.937	3	2	Median	0.91009	0.92917	3.6094	2	1	Median	683100000	296480000	386620000	39043000	16455000	22589000	127380000	57676000	69699000	353720000	141870000	211860000	162950000	80481000	82473000	1053	878	995	6276;6277;6278;6279;6280;6281;6282	8510;8511;8512;8513;8514;8515;8516;8517;8518;8519	8511			10	
ADLSGMSGAR	0	Unmodified	963.44438	0.44437918	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.001	19.495	2	1.7002E-09	16933	160511_QHF_FH_JSI12i_1	132.84	90.243			0.79908	0.8219	12.655	4	0	Median	1.2385	1.0347	NaN	1	0	Median	0.66983	0.78063	NaN	1	0	Median	0.81975	0.81072	NaN	1	0	Median	0.77893	0.83325	NaN	1	0	Median	1458700000	791290000	667390000	334010000	147900000	186110000	340630000	212580000	128050000	420500000	235710000	184790000	363540000	195100000	168440000	1054	1363	996	6283;6284;6285;6286	8520;8521;8522;8523;8524	8522			5	
ADLSLADALTEPSPDIEGEIKR	1	Acetyl (Protein N-term)	2381.1962	0.19619979	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	99.873	99.752	2;3	7.2714E-16	90492	160511_QHF_FH_JSI12i_1	79.635	62.487			0.4617	0.41046	58.525	4	3	Median	0.56866	0.46475	NaN	1	1	Median	0.22731	0.26666	NaN	1	1	Median	0.37486	0.36251	NaN	1	1	Median	1.0066	1.0454	NaN	1	0	Median	118170000	76234000	41932000	14999000	8797600	6201900	28015000	24653000	3361400	21931000	16647000	5283300	53221000	26136000	27086000	1055	1298	997	6287;6288;6289;6290;6291;6292	8525;8526;8527;8528;8529;8530	8527			6	
ADLTAEMISAPLGDFR	0	Unmodified	1705.8345	0.83452116	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			94.997	95.005	2	8.3052E-07	86228	160511_QHF_FH_JSI10i_1	122.39	103.77			0.8332	0.93238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8332	0.93238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13097000	6311500	6785300	0	0	0	13097000	6311500	6785300	0	0	0	0	0	0	1056	4701	998	6293	8531	8531			1	
ADLTALFLPR	0	Unmodified	1115.6339	0.63389451	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.76	1	5						4	2	3	4	3	2	89.471	84.148	2	5.6218E-14	80173	160511_QHF_FH_JSI11i_2	157.91	103.94			0.8708	0.95938	25.474	11	3	Median	1.1245	0.95938	44.462	3	0	Median	0.71225	0.83987	11.02	4	3	Median	1.0641	1.0769	1.3307	2	0	Median	0.95323	1.0428	12.237	2	0	Median	378600000	201750000	176860000	98663000	51813000	46851000	133590000	80119000	53469000	87562000	42424000	45138000	58790000	27391000	31399000	1057	2344	999	6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305	8532;8533;8534;8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548	8540			17	
ADLTEYLSTHYK	1	Unmodified	1439.6933	0.69325988	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.59	5.29	2	12	4					1	3	4	5	8	5	62.309	59.877	2;3	2.8851E-16	51913	160511_QHF_FH_JSI11i_2	195.27	172.74			1.1013	1.1231	42.01	22	11	Median	1.1755	0.9808	25.44	4	1	Median	1.089	1.3063	9.9742	5	3	Median	1.1591	1.1301	41.191	8	4	Median	0.91295	0.99943	71.229	5	3	Median	3709000000	1769900000	1939100000	388010000	200130000	187870000	939160000	467460000	471710000	1674900000	756420000	918460000	706950000	345930000	361020000	1058	1379	1000	6306;6307;6308;6309;6310;6311;6312;6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327	8549;8550;8551;8552;8553;8554;8555;8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566;8567;8568;8569;8570;8571;8572;8573;8574;8575	8564			27	
ADLTVLDENK	1	Unmodified	1116.5663	0.56626845	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	43.607	43.099	2	0.0013386	39162	160511_QHF_FH_JSI12i_1	77.533	52.28			0.55183	0.54626	23.642	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67733	0.64565	NaN	1	0	Median	0.44958	0.46216	NaN	1	1	Median	73463000	41447000	32016000	0	0	0	0	0	0	39090000	20352000	18738000	34373000	21096000	13277000	1059	3584	1001	6328;6329	8576;8577	8577			1	
ADLVIVGAEGVVENGGIINK	1	Unmodified	1966.0735	0.073505879	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		89.819	89.234	3	2.8792E-06	81351	160511_QHF_FH_JSI11i_1	82.482	72.143			0.92489	0.813	1.7875	2	0	Median	1.0232	0.82334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83607	0.80279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45890000	27042000	18848000	20172000	11906000	8266700	0	0	0	25717000	15136000	10581000	0	0	0	1060	2518	1002	6330;6331	8578;8579	8578			2	
ADLYIHVTYIK	1	Unmodified	1334.7234	0.72343779	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		1							5	1	1	3	1	68.39	61.185	3	0.00036501	33220	160513_QHF_FH_JSI11Kac_6	73.082	58.824			0.6074	0.5845	35.603	5	1	Median	0.60126	0.52181	NaN	1	0	Median	0.25278	0.29288	NaN	1	1	Median	0.68956	0.65561	16.236	2	0	Median	0.6074	0.64439	NaN	1	0	Median	167690000	102600000	65093000	29992000	16328000	13664000	51472000	40839000	10634000	46717000	25478000	21239000	39508000	19951000	19557000	1061	5097	1003	6332;6333;6334;6335;6336;6337	8580;8581;8582;8583;8584;8585;8586	8580			7	
ADLYLEGK	1	Unmodified	907.4651	0.46509784	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	35.539	33.028	2	0.0021479	29833	160511_QHF_FH_JSI12i_1	82.279	43.487			1.1383	1.107	28.253	5	1	Median	1.1755	0.95737	NaN	1	0	Median	0.95018	1.107	NaN	1	0	Median	0.91032	0.89238	31.214	2	1	Median	1.5319	1.5622	NaN	1	0	Median	821820000	417270000	404540000	172960000	84686000	88273000	242640000	141130000	101510000	230680000	102620000	128060000	175540000	88835000	86704000	1062	4983	1004	6338;6339;6340;6341;6342	8587;8588;8589;8590;8591;8592;8593;8594;8595	8589			9	
ADMEDLFGSDADSEAERK	1	Acetyl (Protein N-term)	2026.8426	0.84257924	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	73.505	72.94	2	2.1293E-07	66466	160511_QHF_FH_JSI12i_1	90.731	84.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1063	3778	1005	6343	8596	8596			1	
ADMETLQR	0	Oxidation (M)	978.44404	0.44404482	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				2	2	4	1	15.278	10.96	2	0.00030366	16467	160511_QHF_FH_JSI11i_1	120.46	74.086			0.89128	0.98883	83.365	9	0	Median	2.4789	2.0404	170.65	2	0	Median	0.80573	0.93854	4.8808	2	0	Median	1.0968	1.0652	80.601	4	0	Median	0.89128	0.98883	NaN	1	0	Median	663600000	257970000	405630000	290960000	95802000	195160000	9379000	5007500	4371500	348850000	150410000	198440000	14420000	6753400	7666200	1064	1282	1006	6344;6345;6346;6347;6348;6349;6350;6351;6352	8597;8598;8599;8600;8601;8602	8598		916	6	
ADMETLQR	0	Unmodified	962.44913	0.4491302	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.14	4	1				3	3			1	3	3	4	23.425	18.802	2	4.5322E-15	16413	160511_QHF_FH_JSI11i_1	178.08	149.57			0.93082	1.0188	17.514	11	0	Median	1.4222	1.1247	NaN	1	0	Median	0.81325	0.95682	9.7413	3	0	Median	1.0483	1.0314	5.3352	3	0	Median	0.8943	0.95953	24.815	4	0	Median	5122800000	2657300000	2465500000	1135400000	458210000	677210000	1405700000	792280000	613400000	1284000000	728260000	555750000	1297700000	678530000	619140000	1065	1282	1006	6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363	8603;8604;8605;8606;8607;8608;8609;8610;8611;8612;8613;8614;8615;8616;8617;8618	8603			16	
ADMGGAATICSAIVSAAK	1	Unmodified	1692.8175	0.81749089	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.03	75.484	2	4.8156E-07	68758	160511_QHF_FH_JSI12i_1	117.2	102.52			1.5831	1.6649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5831	1.6649	NaN	1	1	Median	23674000	9573000	14101000	0	0	0	0	0	0	0	0	0	23674000	9573000	14101000	1066	1313	1007	6364	8619	8619			1	
ADMQNLVER	0	Acetyl (Protein N-term)	1116.5234	0.52335778	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.18	4			3	2					1	2	3	3	61.092	55.524	2	4.5351E-06	50429	160511_QHF_FH_JSI10i_1	121.73	111.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1067	2169	1008	6365;6366;6367;6368;6369;6370;6371;6372;6373	8620;8621;8622;8623;8624;8625;8626;8627;8628;8629;8630;8631	8625			12	
ADMQNLVER	0	Acetyl (Protein N-term);Oxidation (M)	1132.5183	0.5182724	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	1	1	0			By MS/MS	By MS/MS	11.3	0.471				2	1							2	1	37.403	28.68	2	0.00079597	12232	160513_QHF_FH_JSI12Kacf_1	75.378	51.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1068	2169	1008	6374;6375;6376	8632;8633;8634	8633		1816	3	
ADMVETQQLMR	0	Unmodified	1320.6166	0.61660624	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	46.012	45.332	2	8.1557E-06	40318	160511_QHF_FH_JSI9i_1	112.36	97.684			1.0798	1.0476	8.2394	7	6	Median	1.153	0.96047	5.3053	2	2	Median	0.89148	1.0444	5.9475	2	2	Median	1.1577	1.1231	9.8393	2	2	Median	0.99838	1.0563	NaN	1	0	Median	964880000	495570000	469310000	235340000	115810000	119520000	294100000	155180000	138910000	326620000	168060000	158560000	108830000	56517000	52312000	1069	5163	1009	6377;6378;6379;6380;6381;6382;6383	8635;8636;8637;8638;8639;8640;8641;8642	8642			8	
ADMVIEAVFEDLSLK	1	Unmodified	1678.8488	0.84877424	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		1	3	102.53	102.39	2;3	1.1835E-06	88337	160511_QHF_FH_JSI12i_2	158.2	139.93			1.1515	1.1368	9.1739	5	2	Median	1.2139	1.0296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1515	1.1585	NaN	1	0	Median	1.0082	1.1368	10.619	3	2	Median	413150000	188690000	224460000	39418000	20433000	18985000	0	0	0	132670000	53248000	79418000	241070000	115010000	126050000	1070	1507	1010	6384;6385;6386;6387;6388	8643;8644;8645;8646;8647;8648	8644			6	
ADNAFMLLTQAR	0	Unmodified	1349.6762	0.67617003	4511	Q9H0C5;Q9BX70	BTBD1;BTBD2	BTB/POZ domain-containing protein 1;BTB/POZ domain-containing protein 2	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	76.364	75.12	2	0.00026721	66189	160511_QHF_FH_JSI9i_2	76.655	58.791			0.72574	0.78755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72574	0.78755	NaN	1	1	Median	31215000	16165000	15050000	0	0	0	0	0	0	0	0	0	31215000	16165000	15050000	1071	4511	1011	6389;6390;6391	8649;8650;8651	8650			3	
ADNDAGNAAIDSLLNYETVK	1	Unmodified	2092.9913	0.99129239	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									4	3	1	2	87.158	86.695	2;3	8.2857E-33	78885	160511_QHF_FH_JSI12i_1	150.28	135.59			0.8311	0.78785	14.029	8	7	Median	0.91995	0.77922	16.448	3	2	Median	0.83756	0.9425	15.806	3	3	Median	0.78297	0.76242	NaN	1	1	Median	0.76598	0.79659	NaN	1	1	Median	253250000	133350000	119900000	86012000	39238000	46774000	105250000	57193000	48053000	42398000	23936000	18461000	19590000	12980000	6610900	1072	464	1012	6392;6393;6394;6395;6396;6397;6398;6399;6400;6401	8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662	8654			11	
ADNFEYSDPVDGSISR	0	Unmodified	1770.7697	0.7696723	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	57.219	54.167	2;3	4.2189E-183	49167	160511_QHF_FH_JSI11i_1	312.05	280.86			1.0481	1.0339	5.6192	11	0	Median	1.2436	1.0026	4.942	2	0	Median	0.87341	1.0339	4.5872	3	0	Median	1.0782	1.0261	5.7517	3	0	Median	1.0109	1.0709	7.5799	3	0	Median	3864800000	1752500000	2112400000	978420000	388350000	590080000	924450000	449790000	474670000	1133100000	516520000	616630000	828820000	397830000	431000000	1073	1460	1013	6402;6403;6404;6405;6406;6407;6408;6409;6410;6411;6412	8663;8664;8665;8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679	8664			16	
ADNLNKLK	2	Acetyl (K)	956.5291	0.52909508	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		34.941	26.182	2	0.028139	15439	160513_QHF_FH_JSI11Kac_3	57.931	39.867			0.45785	0.49196	71.23	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69574	0.81409	NaN	1	0	Median	0.3013	0.2973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13400000	9310700	4089500	0	0	0	4689400	2943100	1746300	8710800	6367700	2343200	0	0	0	1074	1667	1014	6413;6414	8680	8680			1	
ADPDVLTEVPAALK	1	Acetyl (Protein N-term)	1479.7821	0.78207489	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	96.23	95.978	2	0.00010156	87009	160511_QHF_FH_JSI12i_1	58.676	44.907			0.82501	0.81423	134.23	4	1	Median	0.81692	0.68328	NaN	1	0	Median	9.7757	11.196	NaN	1	1	Median	0.83318	0.8108	NaN	1	0	Median	0.80124	0.81768	NaN	1	0	Median	125450000	64437000	61015000	33114000	18564000	14550000	13979000	1823100	12156000	45633000	26096000	19536000	32727000	17954000	14773000	1075	1314	1015	6415;6416;6417;6418	8681;8682;8683;8684;8685;8686	8683			6	
ADPEAAWEPTEAEAR	0	Unmodified	1641.7271	0.7270792	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.788	46.377	2	0.035712	42025	160511_QHF_FH_JSI11i_1	47.062	37.629			0.69718	0.65746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69718	0.65746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23617000	14275000	9342400	0	0	0	0	0	0	23617000	14275000	9342400	0	0	0	1076	5254	1016	6419	8687	8687			1	
ADPEELFTK	1	Unmodified	1048.5077	0.50769094	5721	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.831	51.159	2	0.00017327	45492	160511_QHF_FH_JSI9i_1	87.308	70.531			0.8791	0.79311	12.236	4	1	Median	0.91732	0.75829	NaN	1	0	Median	0.6505	0.75245	NaN	1	0	Median	0.84247	0.82952	NaN	1	0	Median	0.95887	0.97903	NaN	1	1	Median	375190000	196800000	178390000	89092000	49795000	39297000	99437000	60586000	38851000	101060000	46279000	54779000	85607000	40143000	45465000	1077	5721	1017	6420;6421;6422;6423	8688;8689;8690;8691;8692	8692			5	
ADPGHWWASFFFGK	1	Unmodified	1651.7572	0.75719754	4705	Q9H3Y8	PPDPF	Pancreatic progenitor cell differentiation and proliferation factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	94.261	86.076	2;3	0.00032571	46324	160513_QHF_FH_JSI12Kac_6	69.92	53.781			0.8489	0.98067	3.5023	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82277	0.98199	NaN	1	0	Median	1.0229	0.98067	NaN	1	0	Median	0.8489	0.92358	NaN	1	0	Median	206480000	101910000	104570000	0	0	0	63403000	26821000	36582000	82812000	38940000	43872000	60270000	36153000	24116000	1078	4705	1018	6424;6425;6426;6427	8693;8694;8695;8696	8695			2	
ADPLFLLIGLPTIPVMLILGK	1	Unmodified	2233.3524	0.35237026	5092	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	2.17				2					6	1	5	1	1	105.87	98.108	2;3	3.167E-13	59320	160513_QHF_FH_JSI10Kac_6	110.77	101.19			1.0576	1.0461	12.583	7	2	Median	1.1729	1.0245	NaN	1	0	Median	0.82264	1.135	12.07	4	2	Linear	1.1798	1.1105	NaN	1	0	Median	0.82339	0.87642	NaN	1	0	Median	1189900000	612350000	577500000	340200000	161010000	179190000	666360000	365250000	301110000	137600000	61487000	76115000	45692000	24599000	21093000	1079	5092	1019	6428;6429;6430;6431;6432;6433;6434;6435	8697;8698;8699;8700;8701;8702;8703;8704;8705;8706;8707;8708	8706			12	
ADPNGPVEGTVIESFTDK	1	Unmodified	1874.8898	0.88978743	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			73.817	73.261	2	0.0003982	66346	160511_QHF_FH_JSI10i_1	81.703	70.065			3.9442	3.9383	2.2119	2	2	Median	4.6855	4.0004	NaN	1	1	Median	3.3202	3.8772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76088000	19250000	56838000	28260000	7449400	20811000	47828000	11800000	36028000	0	0	0	0	0	0	1080	1584	1020	6436;6437	8709;8710	8709			2	
ADPPATEK	1	Unmodified	827.4025	0.40249759	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.0814	6.439	2	0.023547	4056	160511_QHF_FH_JSI9i_1	54.157	7.7314			1.0368	0.83368	NaN	1	1	Median	1.0368	0.83368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259260000	135620000	123640000	259260000	135620000	123640000	0	0	0	0	0	0	0	0	0	1081	4832	1021	6438	8711	8711			1	
ADPQDALRCLHVSR	0	Unmodified	1636.8104	0.8103721	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			79.354	79.194	3	0.031071	71839	160511_QHF_FH_JSI10i_1	25.322	0			0.8999	1.0724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8999	1.0724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67826000	35314000	32512000	0	0	0	67826000	35314000	32512000	0	0	0	0	0	0	1082	3873	1022	6439	8712	8712			1	
ADPSHFELLK	1	Unmodified	1155.5924	0.59242362	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	2	2	51.487	47.242	3	5.3809E-08	40469	160511_QHF_FH_JSI12i_2	100.88	72.674			1.0886	1.1045	15.381	6	0	Median	1.0867	0.9209	NaN	1	0	Median	0.89412	1.1024	NaN	1	0	Median	1.1285	1.1255	2.3769	2	0	Median	1.1401	1.2659	22.232	2	0	Median	377030000	185410000	191620000	54756000	27830000	26925000	71808000	38819000	32989000	158050000	71248000	86799000	92416000	47511000	44905000	1083	2669	1023	6440;6441;6442;6443;6444;6445	8713;8714	8713			2	
ADPSLLGFSVNASSER	0	Unmodified	1648.8057	0.80566387	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			71.906	71.694	2	7.1498E-05	64992	160511_QHF_FH_JSI10i_1	121.28	106.01			0.79294	0.8964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79294	0.8964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32178000	17461000	14718000	0	0	0	32178000	17461000	14718000	0	0	0	0	0	0	1084	3172	1024	6446	8715	8715			1	
ADPSLNPEQLK	1	Unmodified	1210.6194	0.61936665	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		52.419	42.904	2	0.055716	23354	160513_QHF_FH_JSI11Kac_3	35.944	23.416			1.4254	1.3939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4254	1.3939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7697200	4513100	3184100	0	0	0	0	0	0	7697200	4513100	3184100	0	0	0	1085	5435	1025	6447	8716	8716			1	
ADPTVESEEAFK	1	Unmodified	1321.6038	0.60377617	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	39.215	36.856	2	3.9144E-05	32608	160511_QHF_FH_JSI9i_1	103.26	96.665			0.91656	0.87355	13.561	5	2	Median	0.83651	0.68715	NaN	1	0	Median	0.67255	0.80271	NaN	1	1	Median	0.95329	0.90903	5.6296	2	0	Median	0.91656	0.95248	NaN	1	1	Median	548040000	297730000	250320000	108750000	56248000	52501000	131290000	78737000	52550000	157220000	83749000	73467000	150790000	78991000	71801000	1086	2601	1026	6448;6449;6450;6451;6452	8717;8718;8719;8720;8721	8721			5	
ADQDSEAMK	1	Unmodified	993.40732	0.40732497	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	6.1047	5.875	2	1.0574E-08	3700	160511_QHF_FH_JSI11i_1	153.05	67.981			0.89877	0.94089	7.8697	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80635	0.94089	NaN	1	0	Median	0.89877	0.87168	NaN	1	0	Median	0.95231	1.0202	NaN	1	0	Median	1121300000	600120000	521200000	0	0	0	382920000	195480000	187440000	365510000	194120000	171400000	372880000	210520000	162360000	1087	5616	1027	6453;6454;6455	8722;8723;8724;8725	8723			4	
ADQELMTYSHDNIICGITSVSFSK	1	Unmodified	2715.252	0.25201688	2030	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	91.955	91.377	3	0.023959	78910	160511_QHF_FH_JSI12i_2	23.675	21.235			1.0304	1.0544	10.637	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0375	1.2688	NaN	1	0	Median	1.0304	1.0451	NaN	1	0	Median	0.96035	1.0676	NaN	1	0	Median	232580000	117930000	114660000	0	0	0	54468000	25666000	28802000	89450000	47480000	41970000	88663000	44780000	43884000	1088	2030	1028	6456;6457;6458	8726;8727	8727			2	
ADQFEYVMYGK	1	Unmodified	1349.5962	0.59618837	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	5.33	6.13	2						1				1	1	1	62.647	58.733	2	7.3837E-05	53431	160511_QHF_FH_JSI12i_1	91.549	76.398			1.1571	1.1527	16.149	3	1	Median	NaN	NaN	NaN	0	0	Median	0.76826	0.8964	NaN	1	1	Median	1.1571	1.1527	NaN	1	0	Median	1.1819	1.2116	NaN	1	0	Median	231890000	121730000	110160000	0	0	0	1719300	1052300	666950	132780000	64048000	68732000	97395000	56631000	40765000	1089	1771	1029	6459;6460;6461	8728;8729	8728			2	
ADQFLVGTSR	0	Unmodified	1092.5564	0.55637247	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.8	6.37	2						3				1	2	2	41.837	35.563	2	0.0031356	20602	160513_QHF_FH_JSI12Kac_4	79.974	58.51			0.59007	0.5831	21.979	5	4	Median	NaN	NaN	NaN	0	0	Median	0.62244	0.74043	NaN	1	1	Median	0.58027	0.5712	2.9176	2	2	Median	0.56126	0.59611	38.102	2	1	Median	365860000	226430000	139430000	0	0	0	7608000	4209900	3398200	194440000	121860000	72580000	163810000	100350000	63453000	1090	4848	1030	6462;6463;6464;6465;6466	8730;8731;8732;8733;8734;8735	8735			6	
ADQLDYENFR	0	Unmodified	1269.5626	0.56258006	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	44.871	44.227	2	0.0027858	39266	160511_QHF_FH_JSI9i_1	60.434	55.108			0.89772	0.91381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89772	0.91381	NaN	1	0	Median	84748000	48235000	36513000	0	0	0	0	0	0	0	0	0	84748000	48235000	36513000	1091	3675	1031	6467;6468	8736;8737;8738	8738			3	
ADQLTEEQIAEFK	1	Acetyl (Protein N-term)	1562.7464	0.74641766	958	P0DP25;P0DP24;P0DP23			yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	4.72	4	2	4	5	3					4	4	4	6	79.066	75.439	2	6.8216E-51	28431	160513_QHF_FH_JSI12Kacf_1	112.75	95.723			1.0066	1.0555	292.95	16	7	Median	24.721	20.36	430.28	2	1	Median	0.92184	1.0784	255.19	4	1	Median	1.1094	1.056	286.45	4	2	Median	1.006	1.0488	338.42	6	3	Median	10871000000	344190000	10527000000	2946200000	33872000	2912300000	3109000000	98222000	3010800000	2300200000	93765000	2206400000	2516000000	118330000	2397700000	1092	958	1032	6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486	8739;8740;8741;8742;8743;8744;8745;8746;8747;8748;8749;8750;8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761	8756			23	
ADQLYKQK	2	Acetyl (K)	1034.5397	0.53965977	903;1328	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.98					1	3	3	3		1	3	3	3	24.61	16.398	2	2.4448E-10	10274	160513_QHF_FH_JSI10Kac_3	149.65	66.039			0.9046	0.94273	11.944	9	0	Median	0.9046	0.7501	NaN	1	0	Median	0.82324	0.9446	3.0985	2	0	Median	1.1595	1.1474	10.824	3	0	Plateau	0.82781	0.86208	10.176	3	0	Plateau	946790000	487500000	459300000	3039100	1595600	1443500	351940000	207390000	144550000	221680000	99915000	121760000	370140000	178600000	191540000	1093	903;1328	1033	6487;6488;6489;6490;6491;6492;6493;6494;6495;6496	8762;8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778	8776	658		17	
ADQQLVEIDK	1	Unmodified	1157.5928	0.59281755	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			37.163	36.371	2	0.0046517	32181	160511_QHF_FH_JSI9i_1	65.056	50.28			0.49475	0.48481	35.087	2	2	Median	0.46128	0.37829	NaN	1	1	Median	0.53065	0.62132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52101000	35255000	16845000	24165000	17968000	6196900	27936000	17287000	10648000	0	0	0	0	0	0	1094	3063	1034	6497;6498	8779;8780	8780			2	
ADRDESSPYAAMLAAQDVAQR	0	Oxidation (M)	2280.0441	0.044073019	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							2	2	2	4	47.897	47.125	3	6.0907E-09	40129	160511_QHF_FH_JSI12i_3	100.94	91.896			1.1395	1.202	33.928	10	2	Median	1.7181	1.4682	28.358	2	1	Median	1.6324	1.9656	62.943	2	1	Median	1.1198	1.0682	11.781	2	0	Median	1.0958	1.1548	9.9615	4	0	Median	596720000	266720000	330000000	79464000	34336000	45127000	119950000	49163000	70784000	144250000	65521000	78728000	253070000	117700000	135360000	1095	1991	1035	6499;6500;6501;6502;6503;6504;6505;6506;6507;6508	8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792;8793;8794;8795;8796;8797;8798	8798		1659	18	
ADRDESSPYAAMLAAQDVAQR	0	Unmodified	2264.0492	0.049158397	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	2.17	9	17	12					1		9	9	12	9	65.817	64.867	2;3;4	1.6989E-23	56901	160511_QHF_FH_JSI9i_2	168.81	165.09			1.019	1.072	18.145	34	8	Median	1.3837	1.1571	9.8888	8	3	Median	0.92937	1.112	8.056	6	1	Median	1.0423	1.0228	22.972	12	2	Median	0.97737	1.0496	11.715	8	2	Median	12057000000	5846700000	6210300000	1681900000	712080000	969770000	2578600000	1291400000	1287200000	4093600000	1953700000	2139900000	3703000000	1889500000	1813500000	1096	1991	1035	6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524;6525;6526;6527;6528;6529;6530;6531;6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544;6545;6546;6547	8799;8800;8801;8802;8803;8804;8805;8806;8807;8808;8809;8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870;8871;8872;8873	8843			75	
ADRETVAVKPTENNEEEFTSK	2	Unmodified	2393.1347	0.13466217	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3.7	3.8		5	4					1		2	4	4		33.055	31.327	3;4	5.7783E-18	27241	160511_QHF_FH_JSI11i_3	145.75	137.26			0.98837	0.96428	20.893	10	0	Median	1.1104	0.94746	8.73	2	0	Median	1.0819	1.3457	21.009	4	0	Linear	0.90345	0.87569	26.041	4	0	Median	NaN	NaN	NaN	0	0	Median	963870000	469770000	494110000	247960000	113890000	134070000	466600000	246950000	219640000	249320000	108920000	140390000	0	0	0	1097	454	1036	6548;6549;6550;6551;6552;6553;6554;6555;6556;6557	8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891	8879			17	
ADSAVSQEQLR	0	Unmodified	1202.5891	0.58912916	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.35	16.869	2	4.9577E-05	14245	160511_QHF_FH_JSI10i_1	95.573	54.691			1.2596	1.1278	19.81	4	0	Median	1.4675	1.1916	NaN	1	0	Median	0.80252	0.93908	NaN	1	0	Median	1.1148	1.0673	NaN	1	0	Median	1.4232	1.4982	NaN	1	0	Median	219090000	110700000	108390000	82037000	38417000	43619000	47529000	26164000	21366000	48661000	27295000	21365000	40861000	18821000	22040000	1098	5378	1037	6558;6559;6560;6561	8892;8893;8894;8895;8896	8896			5	
ADSAVSQEQLRK	1	Unmodified	1330.6841	0.68409218	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	13.284	12.956	2;3	3.2226E-07	10165	160511_QHF_FH_JSI11i_2	127.76	88.46			0.92763	1.028	31.954	13	5	Median	1.2355	1.0769	6.4107	2	0	Median	0.95182	1.1794	3.8294	2	0	Median	0.88707	0.85878	34.23	4	2	Median	0.82012	0.78285	37.739	5	3	Median	991750000	555010000	436740000	129890000	65337000	64555000	111020000	51191000	59827000	382260000	208030000	174230000	368580000	230450000	138130000	1099	5378	1038	6562;6563;6564;6565;6566;6567;6568;6569;6570;6571;6572;6573;6574	8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913	8906			17	
ADSELQLVEQR	0	Acetyl (Protein N-term)	1328.6572	0.65720872	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	64.878	64.264	2	2.0995E-52	28010	160513_QHF_FH_JSI12Kac_2	202.2	172.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1100	877	1039	6575;6576;6577;6578;6579	8914;8915;8916;8917;8918;8919;8920;8921	8921			8	
ADSEPESPLNASYVYK	1	Unmodified	1768.8156	0.81555986	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.059	56.404	2	1.6104E-05	50833	160511_QHF_FH_JSI10i_1	117.2	75.917			1.0376	1.1094	15.481	4	0	Median	1.0425	0.86129	NaN	1	0	Median	1.0327	1.2264	NaN	1	0	Median	1.1893	1.1575	NaN	1	0	Median	1.0112	1.0632	NaN	1	0	Median	175730000	85001000	90724000	44027000	20027000	24001000	59498000	35314000	24185000	42427000	17442000	24985000	29773000	12219000	17554000	1101	2939	1040	6580;6581;6582;6583	8922;8923;8924;8925;8926;8927;8928	8926			7	
ADSEVAQAGK	1	Unmodified	974.46689	0.46688876	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.0451	6.8079	2	0.041474	4814	160511_QHF_FH_JSI10i_1	52.867	33.352			0.69879	0.81375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69879	0.81375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241440000	139160000	102280000	0	0	0	241440000	139160000	102280000	0	0	0	0	0	0	1102	5461	1041	6584	8929	8929			0	
ADSGPTQPPLSLSPAPETK	1	Unmodified	1891.9527	0.95272204	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.99	55.839	2	4.9954E-05	50669	160511_QHF_FH_JSI11i_1	77.776	53.08			1.7022	1.3749	NaN	1	1	Median	1.7022	1.3749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20497000	7387700	13109000	20497000	7387700	13109000	0	0	0	0	0	0	0	0	0	1103	235	1042	6585;6586;6587;6588	8930;8931;8932;8933	8930			4	
ADSGTAGGAALAAPAPGPGSGGPGPR	0	Acetyl (Protein N-term)	2158.0403	0.04030827	4004	Q96C90	PPP1R14B	Protein phosphatase 1 regulatory subunit 14B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	53.51	52.896	2;3	1.6054E-57	47676	160511_QHF_FH_JSI10i_1	231.71	215.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1104	4004	1043	6589;6590;6591;6592;6593	8934;8935;8936;8937;8938	8937			5	
ADSLLAVVK	1	Unmodified	914.54368	0.54368251	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.93	4	3					2	1		1	3	3	3	59.051	55.263	2	2.1823E-06	49642	160511_QHF_FH_JSI10i_1	127.46	97.277			0.93668	0.89474	22.474	10	1	Median	1.0018	0.84392	NaN	1	0	Median	0.77368	0.89872	29.505	3	0	Median	1.1513	1.1268	18.92	3	1	Median	0.76352	0.83566	4.9929	3	0	Median	749360000	393750000	355610000	64409000	34969000	29440000	203330000	110980000	92355000	279930000	129550000	150390000	201680000	118260000	83425000	1105	2670;2501	1044	6594;6595;6596;6597;6598;6599;6600;6601;6602;6603	8939;8940;8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951	8947			11	
ADSLLAVVKREPAEQPGDGER	1	Acetyl (K)	2278.1553	0.15533803	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	1	0	0	2			By MS/MS		15	0								1				1		75.403	64.707	3	0.027534	34522	160513_QHF_FH_JSI11Kac_5	43.598	34.775			1.254	1.2315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.254	1.2315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5294900	2391900	2903000	0	0	0	0	0	0	5294900	2391900	2903000	0	0	0	1106	2670;2501	1045	6604	8952	8952			1	
ADSLLEDITDIPK	1	Unmodified	1428.7348	0.73479034	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	90.472	90.023	2	0.00075766	82033	160511_QHF_FH_JSI12i_1	80.979	69.113			4.8325	4.9921	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8325	4.9921	NaN	1	1	Median	52449000	11242000	41207000	0	0	0	0	0	0	0	0	0	52449000	11242000	41207000	1107	4363	1046	6605	8953	8953			1	
ADSNTTVKPAFPSGLQK	2	Acetyl (K)	1801.921	0.92102798	3065	Q6MZP7	LIN54	Protein lin-54 homolog	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	69.094	59.765	3	0.0026491	30600	160513_QHF_FH_JSI12Kac_3	51.265	33.162			1.303	1.4349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.303	1.4349	NaN	1	0	Median	7953600	5034100	2919600	0	0	0	2439100	2439100	0	0	0	0	5514600	2595000	2919600	1108	3065	1047	6606;6607	8954;8955;8956	8954	2755		3	
ADSPSIDYAELLQHFEK	1	Unmodified	1961.9371	0.93707198	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			93.13	92.754	3	1.0633E-06	82326	160511_QHF_FH_JSI10i_2	107.98	98.397			1.4281	1.7819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4281	1.7819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41435000	19603000	21831000	0	0	0	41435000	19603000	21831000	0	0	0	0	0	0	1109	2280	1048	6608	8957	8957			1	
ADSRDPASDQMQHWK	1	Acetyl (Protein N-term)	1812.7849	0.78494521	800	P04040	CAT	Catalase	yes	yes	0	1	0	1		By matching	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	35.334	34.733	3	4.4505E-06	29091	160511_QHF_FH_JSI12i_2	85.006	82.372			0.66533	0.73068	37.356	2	0	Median	NaN	NaN	NaN	0	0	Median	0.45427	0.56106	NaN	1	0	Median	0.97445	0.95158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85246000	52805000	32441000	0	0	0	30986000	21157000	9828600	54260000	31648000	22612000	0	0	0	1110	800	1049	6609;6610;6611	8958	8958			1	
ADSSSVLPSPLSISTK	1	Unmodified	1587.8356	0.83556702	3016	Q66K14	TBC1D9B	TBC1 domain family member 9B	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.263	70.73	2	0.0009769	64372	160511_QHF_FH_JSI12i_1	59.198	45.429			1.0832	1.0058	28.211	4	0	Median	1.1016	0.94175	NaN	1	0	Median	1.4529	1.7236	NaN	1	0	Median	1.0651	1.015	NaN	1	0	Median	0.97655	0.99663	NaN	1	0	Median	139750000	70841000	68906000	32005000	15722000	16283000	43087000	22538000	20550000	32720000	15961000	16759000	31935000	16620000	15315000	1111	3016	1050	6612;6613;6614;6615	8959;8960;8961	8960			1	
ADSVAAK	1	Unmodified	660.34425	0.34425443	4812	Q9H9L3	ISG20L2	Interferon-stimulated 20 kDa exonuclease-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	5	5.44	5	1			1	2				2	3	2	2	7.0986	2.878	2	0.019072	3339	160511_QHF_FH_JSI10i_1	53.71	8.7367			1.0351	1.0438	48.402	8	1	Median	2.3636	1.93	97.551	2	0	Median	0.79961	0.95468	7.5106	2	1	Median	1.011	0.99225	18.549	2	0	Median	1.0351	1.0835	0.16894	2	0	Median	10288000000	5220000000	5067800000	462590000	205670000	256920000	4659100000	2353100000	2306000000	573710000	279090000	294630000	4592400000	2382100000	2210200000	1112	4812	1051	6616;6617;6618;6619;6620;6621;6622;6623;6624	8962;8963;8964;8965;8966;8967	8964			6	
ADSVPGTYRK	1	Unmodified	1092.5564	0.55637247	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	2	2		10.905	10.905	2	7.964E-05	8466	160511_QHF_FH_JSI11i_3	87.639	68.545			1.0526	0.97215	19.84	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0526	0.97215	19.84	2	1	Median	NaN	NaN	NaN	0	0	Median	83547000	39166000	44382000	0	0	0	0	0	0	83547000	39166000	44382000	0	0	0	1113	2595	1052	6625;6626;6627;6628;6629	8968;8969;8970;8971;8972	8968			5	
ADSVVVLLCR	0	Unmodified	1130.6118	0.61177885	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.5	5.5		1					1	2			1	1	2	69.583	62.023	2	0.0036158	33175	160513_QHF_FH_JSI11Kac_5	67.897	52.235			1.5679	1.794	52.972	3	1	Median	NaN	NaN	NaN	0	0	Median	1.5679	1.794	NaN	1	1	Median	1.1175	1.0974	NaN	1	0	Median	2.941	3.163	NaN	1	0	Median	33563000	9841900	23721000	0	0	0	2443800	1006400	1437400	5250600	2472600	2778000	25869000	6362900	19506000	1114	3904	1053	6630;6631;6632;6633	8973;8974;8975;8976;8977	8975			5	
ADSYYEYLLK	1	Unmodified	1263.6023	0.60231961	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	69.961	69.313	2	2.2811E-07	63158	160511_QHF_FH_JSI12i_1	115.71	95.928			0.62749	0.62479	19.341	3	0	Median	0.56593	0.45879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63905	0.62479	NaN	1	0	Median	0.62749	0.65507	NaN	1	0	Median	154740000	94628000	60111000	50414000	35796000	14617000	0	0	0	55790000	33779000	22011000	48535000	25052000	23483000	1115	5374	1054	6634;6635;6636	8978;8979;8980;8981;8982	8980			5	
ADTGHAFLAKPPAR	1	Acetyl (K)	1492.7787	0.77866126	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.7							2	5	3	2	2	3	3	48.772	38.635	2;3	1.6948E-07	21612	160513_QHF_FH_JSI11Kac_5	109.84	102.64			1.1021	1.1409	58.111	10	2	Median	1.2635	1.085	20.006	2	0	Median	0.83669	0.98968	10.488	2	0	Median	1.2307	1.2263	61.264	3	1	Median	1.1203	1.2211	86.473	3	1	Median	104630000	50398000	54232000	24050000	9942400	14108000	22536000	12580000	9956400	29947000	12324000	17623000	28097000	15552000	12545000	1116	5698	1055	6637;6638;6639;6640;6641;6642;6643;6644;6645;6646	8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993	8986	3527		11	
ADTIDTIEK	1	Unmodified	1004.5026	0.50260556	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	26.509	26.147	2	0.005133	23006	160511_QHF_FH_JSI11i_1	64.711	46.676			12.559	12.774	85.507	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24.031	23.384	NaN	1	1	Median	6.5634	6.9784	NaN	1	1	Median	2258300000	124350000	2133900000	0	0	0	0	0	0	1250600000	58944000	1191600000	1007700000	65410000	942330000	1117	5626	1056	6647;6648	8994;8995	8994			2	
ADTLDPALLRPGR	0	Unmodified	1393.7678	0.76776222	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.11	2	3	3					1		1	3	4	1	52.988	51.205	3	9.3439E-06	44947	160511_QHF_FH_JSI9i_2	98.406	78.31			0.9301	0.92888	22.642	9	0	Median	1.2159	1.0328	NaN	1	0	Median	0.73052	0.90912	41.266	3	0	Median	0.93327	0.92967	10.332	4	0	Median	0.81094	0.81029	NaN	1	0	Median	812360000	397820000	414550000	159380000	78220000	81157000	325120000	159860000	165260000	273660000	131870000	141790000	54211000	27872000	26339000	1118	1567	1057	6649;6650;6651;6652;6653;6654;6655;6656;6657	8996;8997;8998;8999;9000;9001;9002;9003;9004;9005	8999			10	
ADTLTLEER	0	Unmodified	1046.5244	0.52440364	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.338	29.74	2	7.9941E-05	25970	160511_QHF_FH_JSI9i_1	95.502	44.536			0.81538	0.86995	10.665	4	0	Median	1.1184	0.93133	NaN	1	0	Median	0.79589	0.93503	NaN	1	0	Median	0.83535	0.81262	NaN	1	0	Median	0.71975	0.75275	NaN	1	0	Median	825690000	411820000	413870000	204090000	80939000	123150000	213890000	110270000	103630000	169120000	89893000	79227000	238590000	130730000	107870000	1119	5298	1058	6658;6659;6660;6661	9006;9007;9008;9009;9010;9011	9011			5	
ADTLTLK	1	Unmodified	760.43307	0.43306943	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	27.568	23.708	2	0.011216	20563	160511_QHF_FH_JSI11i_1	62.659	34.404			0.90719	1.0192	22.09	5	0	Median	1.5465	1.2731	NaN	1	0	Median	0.73181	0.85387	25.027	2	0	Median	0.90719	0.88809	NaN	1	0	Median	1.058	1.1143	NaN	1	0	Median	958710000	384520000	574190000	317120000	84780000	232340000	312650000	150590000	162050000	7734400	4192700	3541700	321210000	144960000	176250000	1120	2603	1059	6662;6663;6664;6665;6666;6667	9012;9013;9014;9015;9016;9017;9018;9019	9012			8	
ADTLTPEECQQFK	1	Unmodified	1565.7032	0.70317264	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.67	38.367	2	6.9913E-05	34541	160511_QHF_FH_JSI11i_1	138.25	120.81			0.60408	0.58411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60408	0.58411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35231000	23299000	11932000	0	0	0	0	0	0	35231000	23299000	11932000	0	0	0	1121	2725	1060	6668	9020	9020			1	
ADTLTPEECQQFKK	2	Acetyl (K)	1735.8087	0.80870034	2725	Q16181	SEPT7	Septin-7	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		54.033	44.474	3	0.031708	24150	160513_QHF_FH_JSI11Kac_3	37.594	32.792			0.20864	0.22455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20864	0.22455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	551250	493790	57459	0	0	0	0	0	0	551250	493790	57459	0	0	0	1122	2725	1061	6669	9021	9021			1	
ADTNLGNILLNVLIPPNMPCTR	0	Unmodified	2435.2665	0.26648516	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.61	102.47	3	0.026597	85114	160511_QHF_FH_JSI10i_3	28.418	20.027			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9155300	9155300	0	0	0	0	9155300	9155300	0	0	0	0	0	0	0	1123	5382	1062	6670	9022	9022			1	
ADTNQLADK	1	Unmodified	974.46689	0.46688876	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.834	10.046	2	0.00078599	7518	160511_QHF_FH_JSI9i_1	85.29	34.324			2.0206	1.6512	NaN	1	1	Median	2.0206	1.6512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90828000	40724000	50104000	90828000	40724000	50104000	0	0	0	0	0	0	0	0	0	1124	340	1063	6671	9023	9023			1	
ADTQTYQPYNK	1	Unmodified	1327.6044	0.60444487	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.33	4	4	4		4	4	1			4	6	7	4	21.637	17.051	2	7.5574E-89	15308	160511_QHF_FH_JSI11i_1	244.61	211.35			0.97203	1.0132	31.38	18	8	Median	1.2157	0.95973	68.593	3	2	Median	0.86113	1.0274	15.389	5	2	Median	0.99343	0.93433	31.294	7	4	Median	0.98847	1.0586	11.768	3	0	Median	6156300000	2949900000	3206400000	1187500000	489760000	697750000	1729400000	904570000	824830000	1633200000	762300000	870880000	1606200000	793280000	812900000	1125	2127	1064	6672;6673;6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684;6685;6686;6687;6688;6689;6690;6691;6692	9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059	9025			36	
ADTSQEICSPR	0	Unmodified	1262.5561	0.55611447	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.784	15.34	2	0.034709	13022	160511_QHF_FH_JSI12i_1	46.524	26.195			1.3843	1.3976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3843	1.3976	NaN	1	1	Median	24754000	9587200	15166000	0	0	0	0	0	0	0	0	0	24754000	9587200	15166000	1126	1790	1065	6693	9060	9060			1	
ADTSSQGALVFLSK	1	Unmodified	1422.7355	0.73545904	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27	4					2	3			1	2	3	3	64.907	58.197	2;3	2.1717E-30	32504	160513_QHF_FH_JSI10Kac_3	169.62	144.23			1.0166	1.0613	61.689	9	5	Median	1.216	0.18857	NaN	1	0	Median	0.96102	1.1365	7.8952	2	0	Median	0.8626	0.84323	17.542	3	2	Plateau	1.0214	1.0613	29.543	3	3	Median	467680000	240610000	227070000	2199300	1089600	1109600	21322000	11183000	10140000	258920000	152130000	106790000	185240000	76202000	109040000	1127	3264	1066	6694;6695;6696;6697;6698;6699;6700;6701;6702	9061;9062;9063;9064;9065;9066;9067;9068;9069;9070;9071	9071			11	
ADTTPNGPQGAGAVQFMMTNK	1	Acetyl (Protein N-term)	2176.9881	0.98813804	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		77.836	77.591	3	1.1334E-07	70557	160511_QHF_FH_JSI11i_1	45.395	42.007			1.982	2.0994	90.229	2	1	Median	NaN	NaN	NaN	0	0	Median	3.4672	3.9736	NaN	1	1	Median	1.133	1.1092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73455000	34982000	38473000	0	0	0	29556000	8149300	21407000	43899000	26833000	17065000	0	0	0	1128	1890	1067	6703;6704	9072;9073	9072			2	
ADTTSTVTPVPGQEK	1	Unmodified	1529.7573	0.7573167	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	26.854	26.215	2	1.0672E-06	23320	160511_QHF_FH_JSI12i_1	143.17	98.008			0.53405	0.49777	54.296	4	4	Median	0.62383	0.52631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38639	0.37485	NaN	1	1	Median	0.75378	0.77996	71.401	2	2	Median	94979000	63357000	31622000	30482000	21352000	9130100	0	0	0	15919000	11824000	4094900	48578000	30181000	18397000	1129	4805	1068	6705;6706;6707;6708	9074;9075;9076;9077	9075			4	
ADTTTGSAAGPPLSEDDK	1	Unmodified	1731.7799	0.77990263	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.296	27.739	2	1.192E-16	24663	160511_QHF_FH_JSI10i_1	126.63	102.29			1.1841	1.1925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1841	1.1925	NaN	1	1	Median	17551000	6533700	11017000	0	0	0	0	0	0	0	0	0	17551000	6533700	11017000	1130	4805	1069	6709;6710;6711	9078;9079;9080	9079			3	
ADVDISGPK	1	Unmodified	900.45526	0.45526144	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				2	2	1	1	23.8	19.073	2	2.8574E-06	20186	160511_QHF_FH_JSI10i_1	124.98	23.441			0.91327	0.91272	8.9749	6	0	Median	1.2217	1.0077	10.752	2	0	Median	0.71854	0.86128	2.4476	2	0	Median	0.99243	0.96914	NaN	1	0	Median	0.84042	0.89196	NaN	1	0	Median	9000900000	4588300000	4412600000	2222100000	1025700000	1196400000	2163000000	1144200000	1018800000	2143900000	1079600000	1064200000	2472000000	1338800000	1133200000	1131	2286	1070	6712;6713;6714;6715;6716;6717	9081;9082;9083;9084;9085;9086;9087;9088;9089;9090	9086			10	
ADVDRAVKAAR	1	Unmodified	1170.6469	0.64691881	1365	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2	0		2								1	1			61.513	60.604	2	0.038206	53810	160511_QHF_FH_JSI10i_2	81.296	45.858			0.93177	0.94789	4.9149	2	0	Median	1.173	0.98141	NaN	1	0	Median	0.74016	0.91551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	810420000	429110000	381310000	383460000	175750000	207720000	426950000	253360000	173590000	0	0	0	0	0	0	1132	1365	1071	6718;6719	9091	9091			1	
ADVDVQPYAFTTK	1	Unmodified	1453.7089	0.70890994	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	59.692	57.588	2	2.287E-22	50963	160511_QHF_FH_JSI9i_1	178.67	154.32			1.1138	1.1308	26.784	6	3	Median	1.1893	0.95955	NaN	1	0	Median	1.0573	1.2639	NaN	1	0	Median	1.0551	1.0438	36.12	3	2	Median	1.1732	1.2251	NaN	1	1	Median	1076800000	535130000	541680000	235390000	112290000	123100000	223120000	113060000	110050000	453220000	223450000	229770000	165080000	86318000	78759000	1133	4559	1072	6720;6721;6722;6723;6724;6725;6726;6727	9092;9093;9094;9095;9096;9097;9098;9099;9100;9101	9099			10	
ADVDVSGPK	1	Unmodified	886.43961	0.43961137	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	5.6	5	2	1		3	5				3	3	4	6	19.609	15.659	2	1.7059E-07	13113	160511_QHF_FH_JSI9i_1	122.19	93.765			0.95365	0.96852	17.318	12	4	Median	1.1763	0.96165	0.90481	2	1	Median	0.89294	1.065	13.383	3	0	Median	1.0465	0.96921	18.561	3	1	Median	0.90481	0.97727	27.25	4	2	Median	4514300000	2120800000	2393500000	1171000000	475110000	695870000	1216400000	685880000	530560000	1119300000	504600000	614750000	1007500000	455180000	552340000	1134	2286	1073	6728;6729;6730;6731;6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743	9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123	9118			22	
ADVEEEFLALRK	1	Unmodified	1418.7405	0.74054442	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	66.254	65.536	2;3	1.4133E-05	56489	160511_QHF_FH_JSI12i_3	93.011	70.003			0.89522	0.93447	75.669	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5704	3.5599	NaN	1	1	Median	1.4189	1.5095	80.897	2	1	Median	287870000	133750000	154130000	0	0	0	0	0	0	18388000	4142800	14246000	269490000	129600000	139880000	1135	1576	1074	6744;6745;6746	9124;9125;9126	9126			3	
ADVEEESLALRK	1	Unmodified	1358.7042	0.70415892	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2	0.632	1	3	1							1	1	2	1	35.863	35.301	3	0.000228	30123	160511_QHF_FH_JSI11i_2	59.116	35.89			0.65783	0.81122	58.339	5	2	Median	0.65742	0.55965	NaN	1	1	Median	0.65783	0.81122	NaN	1	1	Median	1.8053	1.7898	22.571	2	0	Median	0.58307	0.60323	NaN	1	0	Median	288860000	144620000	144240000	41037000	24786000	16250000	47236000	26531000	20705000	141070000	54635000	86435000	59517000	38666000	20850000	1136	1576	1075	6747;6748;6749;6750;6751	9127;9128;9129	9128			3	
ADVFHAYLSLLK	1	Unmodified	1375.75	0.7499869	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.32	6.14		11	9						8	6	6	8	8	95.034	92.453	2;3	8.3537E-25	44088	160513_QHF_FH_JSI9Kac_6	145.17	107.14			1.0275	1.0169	18.578	27	7	Median	1.1154	0.94811	10.919	6	1	Median	0.8121	0.96402	16.102	6	1	Median	1.101	1.0709	22.34	8	3	Median	0.94388	1.0189	18.792	7	2	Median	4590300000	2335200000	2255100000	1373500000	689940000	683550000	977910000	569270000	408640000	1304400000	616040000	688400000	934510000	459970000	474540000	1137	3343	1076	6752;6753;6754;6755;6756;6757;6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778;6779	9130;9131;9132;9133;9134;9135;9136;9137;9138;9139;9140;9141;9142;9143;9144;9145;9146;9147;9148;9149;9150;9151;9152;9153;9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185;9186;9187	9173			58	
ADVIQATGDAICIFR	0	Unmodified	1648.8243	0.82429083	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3									4	3	3	88.141	87.703	2;3	8.6585E-05	79884	160511_QHF_FH_JSI11i_1	113.65	91.116			1.0025	1.1855	40.912	9	6	Median	NaN	NaN	NaN	0	0	Median	1.0025	1.2153	20.679	3	2	Median	0.80111	0.79861	7.6973	3	2	Plateau	1.1589	1.1855	55.369	3	2	Plateau	211040000	97236000	113810000	0	0	0	61110000	31038000	30072000	87035000	42809000	44226000	62897000	23389000	39507000	1138	2277	1077	6780;6781;6782;6783;6784;6785;6786;6787;6788;6789	9188;9189;9190;9191;9192;9193;9194;9195;9196	9188			9	
ADVLFIAPR	0	Unmodified	1000.5706	0.57056597	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.5	0.5							2	2			2	2		73.49	62.768	2	0.0035388	33532	160513_QHF_FH_JSI10Kac_4	73.26	51.96			1.1608	1.1092	16.244	3	1	Median	NaN	NaN	NaN	0	0	Median	0.87119	0.98513	NaN	1	0	Median	1.2764	1.2275	14.326	2	1	Median	NaN	NaN	NaN	0	0	Median	8671500	3891300	4780200	0	0	0	2533200	1218600	1314700	6138300	2672800	3465500	0	0	0	1139	3840	1078	6790;6791;6792;6793	9197;9198;9199;9200	9197			3	
ADVLSEEAILK	1	Unmodified	1186.6445	0.64451877	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	2	2	3	66.945	62.328	2	6.8927E-18	56377	160511_QHF_FH_JSI11i_1	156.83	109.94			0.89496	0.92449	36.415	7	1	Median	1.0494	0.8695	NaN	1	0	Median	0.52646	0.63573	53.456	2	1	Median	0.95576	0.92449	NaN	1	0	Median	0.89496	0.97048	29.175	3	0	Median	1771700000	1001600000	770100000	323980000	169590000	154390000	452350000	283310000	169040000	484900000	261990000	222910000	510520000	286760000	223760000	1140	5722	1079	6794;6795;6796;6797;6798;6799;6800;6801	9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214	9201			14	
ADVLSVLR	0	Acetyl (Protein N-term)	913.52328	0.52328142	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	90.623	88.603	2	0.00035067	82639	160511_QHF_FH_JSI11i_1	109.01	66.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1141	3090	1080	6802;6803;6804;6805;6806	9215;9216;9217;9218;9219;9220;9221;9222;9223	9216			9	
ADVLTTGAGNPVGDK	1	Unmodified	1413.71	0.70997257	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	3	2	41.776	39.24	2;3	7.8899E-40	35658	160511_QHF_FH_JSI12i_1	200.93	176.14			0.93482	0.96842	15.725	9	0	Median	1.1412	0.92744	28.648	2	0	Median	0.8021	0.94955	2.7822	2	0	Median	1.1432	1.1313	19.22	3	0	Median	0.91268	0.97969	9.4926	2	0	Median	1593100000	784640000	808450000	316480000	137870000	178610000	446160000	241730000	204420000	512960000	246090000	266870000	317490000	158950000	158540000	1142	800	1081	6807;6808;6809;6810;6811;6812;6813;6814;6815	9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234	9227			11	
ADVQAVVSAVTLLR	0	Unmodified	1440.83	0.83002813	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				96.927	96.797	2	0.00049482	85051	160511_QHF_FH_JSI9i_2	69.451	59.219			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1143	2499	1082	6816	9235	9235			1	
ADVQSIIGLQR	0	Unmodified	1198.667	0.66698555	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.62	4	2					3	4		2	3	4	4	66.629	60.531	2	2.6146E-59	53992	160511_QHF_FH_JSI9i_1	229.17	147.57			0.9023	0.93555	8.2689	13	0	Median	1.0399	0.87972	16.98	2	0	Median	0.77446	0.91103	1.6154	3	0	Plateau	0.97505	0.96325	5.6841	4	0	Median	0.92272	0.99751	7.7469	4	0	Median	3034200000	1557500000	1476700000	334520000	157870000	176650000	656070000	334780000	321290000	1041000000	539690000	501310000	1002700000	525180000	477480000	1144	2380	1083	6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827;6828;6829	9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253;9254;9255	9249			20	
ADVSLPSMQGDLK	1	Unmodified	1359.6704	0.67041595	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	60.689	60.166	2	2.9115E-07	53451	160511_QHF_FH_JSI9i_1	97.734	79.422			0.88979	0.96966	5.8424	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8758	1.0106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90401	0.93041	NaN	1	1	Median	98700000	56715000	41985000	0	0	0	27111000	10958000	16153000	0	0	0	71589000	45757000	25832000	1145	3405	1084	6830;6831;6832;6833;6834	9256;9257;9258;9259;9260;9261	9261			6	
ADVVDSETVVR	0	Unmodified	1188.5986	0.59863121	4752	Q9H6T0	ESRP2	Epithelial splicing regulatory protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			33.676	33.336	2	0.0016376	29800	160511_QHF_FH_JSI10i_1	70.977	33.255			0.45348	0.53449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45348	0.53449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73281000	46010000	27271000	0	0	0	73281000	46010000	27271000	0	0	0	0	0	0	1146	4752	1085	6835	9262	9262			1	
ADVVESWIGEK	1	Unmodified	1231.6085	0.60846762	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.786	62.141	2	0.00068695	56561	160511_QHF_FH_JSI12i_1	73.841	51.101			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1147	2470	1086	6836	9263	9263			1	
ADVVLPAR	0	Unmodified	839.4865	0.48650199	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.227	30.654	2	0.023481	27677	160511_QHF_FH_JSI12i_1	54.205	31.186			1.1115	1.1612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.1612	NaN	1	1	Median	23793000	10499000	13293000	0	0	0	0	0	0	0	0	0	23793000	10499000	13293000	1148	3147	1087	6837	9264	9264			1	
ADVVPKTAENFR	1	Acetyl (K)	1387.7096	0.70957864	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	57.363	48.069	2	0.0014285	24971	160513_QHF_FH_JSI10Kac_3	81.017	70.259			0.074144	0.083069	17.973	2	2	Median	NaN	NaN	NaN	0	0	Median	0.062667	0.073155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.087723	0.094326	NaN	1	1	Median	12249000	11513000	736530	0	0	0	5829000	5439200	389820	0	0	0	6420200	6073500	346710	1149	1348	1088	6838;6839	9265;9266	9266	1282		2	
ADVVVSGPK	1	Unmodified	870.48108	0.48108226	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.85	5				1	3				1	4	2	2	23.703	19.649	2	1.1588E-05	16789	160511_QHF_FH_JSI10i_1	126.41	108.56			1.0036	1.0368	15.459	8	2	Median	1.1301	0.91932	NaN	1	1	Median	0.93734	1.0664	17.028	3	1	Median	1.0016	0.97981	26.812	2	0	Median	1.0118	1.0899	11.053	2	0	Median	2567900000	1290500000	1277300000	625850000	289940000	335910000	578990000	336560000	242420000	766040000	351710000	414330000	596980000	312290000	284690000	1150	2286	1089	6840;6841;6842;6843;6844;6845;6846;6847;6848	9267;9268;9269;9270;9271;9272;9273;9274;9275;9276;9277	9272			11	
ADWLSHYWMPK	1	Unmodified	1432.6598	0.65979168	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.49		6	5						6	1	5	6	5	77.781	74.354	2;3	2.0519E-22	39252	160513_QHF_FH_JSI10Kac_6	161.63	143.77			0.94394	1.0471	20.326	14	5	Median	1.2213	1.0489	NaN	1	0	Median	0.94394	1.1418	13.86	4	1	Median	1.0779	1.0453	25.362	5	3	Median	0.88707	0.92117	24.555	4	1	Median	938740000	478500000	460240000	105600000	47015000	58589000	277480000	130680000	146800000	247470000	130810000	116660000	308180000	170000000	138180000	1151	900	1090	6849;6850;6851;6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865	9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299	9299			21	
ADWLSHYWMPK	1	Oxidation (M)	1448.6547	0.6547063	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	1	0	By matching			By MS/MS	16	0									2	1			1	75	65.986	3	0.015656	34675	160513_QHF_FH_JSI12Kac_6	44.945	42.236			1.0788	1.0345	16.564	2	0	Median	1.3629	1.1631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85395	0.92017	NaN	1	0	Median	45246000	21100000	24146000	21514000	10109000	11405000	0	0	0	0	0	0	23732000	10991000	12741000	1152	900	1090	6866;6867	9300	9300		478	0	
ADYEIASK	1	Unmodified	895.42871	0.42871234	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	21.076	18.225	2	0.0011735	11172	160513_QHF_FH_JSI11Kac_3	101.72	71.536			0.92443	1.0064	38.77	6	5	Median	0.79429	0.65247	NaN	1	1	Median	0.84974	1.0064	1.9675	2	2	Median	1.1133	1.0851	17.319	2	1	Median	2.0413	2.1241	NaN	1	1	Median	2017000000	770480000	1246500000	373680000	175180000	198500000	574950000	239610000	335330000	505840000	203840000	302000000	562500000	151850000	410650000	1153	4910;5562	1091	6868;6869;6870;6871;6872;6873	9301;9302;9303;9304;9305;9306;9307	9303			7	
ADYFNMPVHMVPTELVEK	1	Unmodified	2119.0118	0.0118336	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	92.344	91.787	3	1.8956E-05	79259	160511_QHF_FH_JSI12i_2	78.794	70.003			0.73265	0.84945	21.806	3	1	Median	NaN	NaN	NaN	0	0	Median	0.68386	0.84945	NaN	1	1	Median	0.73265	0.76157	NaN	1	0	Median	1.0636	1.1594	NaN	1	0	Median	79371000	41034000	38337000	0	0	0	24384000	13197000	11187000	36301000	20146000	16155000	18686000	7691000	10995000	1154	1515	1092	6874;6875;6876	9308;9309;9310;9311;9312	9309			5	
ADYNLTR	0	Unmodified	851.41373	0.41373097	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.25	5.63	3						1			1		2	1	18.782	16.438	2	0.016125	14200	160511_QHF_FH_JSI12i_1	63.565	38.567			1.2053	1.2209	10.04	4	0	Linear	1.3821	1.1233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1551	1.1329	17.246	2	0	Median	1.1067	1.1578	NaN	1	0	Median	860570000	346190000	514380000	173670000	74075000	99593000	0	0	0	376960000	146530000	230430000	309940000	125580000	184360000	1155	1283	1093	6877;6878;6879;6880	9313;9314	9313			2	
ADYSTVPPPSSGSAGGGGGGGGGGGVNDAFK	1	Acetyl (Protein N-term)	2678.1845	0.1844659	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	60.653	59.999	3	1.2853E-07	54441	160511_QHF_FH_JSI12i_1	63.111	60.013			0.29031	0.30011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29031	0.30011	NaN	1	1	Median	53880000	43617000	10263000	0	0	0	0	0	0	0	0	0	53880000	43617000	10263000	1156	3966	1094	6881	9315	9315			1	
ADYTSHLR	0	Unmodified	961.46174	0.4617438	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	13.838	13.293	2;3	0.0034561	10863	160511_QHF_FH_JSI9i_2	51.193	40.319			0.93773	1.0726	7.5966	7	1	Median	1.4597	1.2344	NaN	1	0	Median	0.88062	1.0898	0.61966	2	1	Median	1.0648	1.0285	5.9358	2	0	Median	0.90751	1.0234	5.3714	2	0	Median	568670000	297600000	271060000	94515000	39897000	54618000	122240000	67903000	54338000	204210000	109920000	94289000	147700000	79876000	67819000	1157	3860	1095	6882;6883;6884;6885;6886;6887;6888	9316;9317;9318;9319;9320;9321;9322	9319			7	
AEAAASALADADADLEER	0	Unmodified	1787.8174	0.81735077	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		60.407	59.995	2	1.2094E-22	54371	160511_QHF_FH_JSI11i_1	173.68	148.82			0.56438	0.59379	49.95	2	1	Median	NaN	NaN	NaN	0	0	Median	0.37047	0.4171	NaN	1	1	Median	0.85979	0.84533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75455000	44320000	31135000	0	0	0	34084000	21014000	13069000	41372000	23306000	18066000	0	0	0	1158	348	1096	6889;6890	9323;9324;9325	9324			3	
AEADKNDK	2	Acetyl (K)	931.42469	0.42468959	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.1	0.599				1	5	2					3	3	2	5.3847	-1.8797	2	0.0008263	1534	160513_QHF_FH_JSI11Kac_2	110.87	51.627			0.82603	0.91675	164.2	6	1	Median	NaN	NaN	NaN	0	0	Median	5.2257	6.2171	258.11	2	1	Median	0.55948	0.54817	51.547	2	0	Median	0.83774	0.91675	4.7726	2	0	Median	113410000	60682000	52727000	0	0	0	32365000	9913900	22451000	41984000	30819000	11165000	39060000	19949000	19111000	1159	898;880	1097	6891;6892;6893;6894;6895;6896;6897;6898	9326;9327;9328;9329;9330;9331;9332	9327	597		7	
AEAEAGSPRPDPR	0	Unmodified	1351.648	0.64804102	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	1	By MS/MS		By matching	By matching	2.33	0.471		2	1							1		1	1	9.1601	8.9544	3	0.0054963	6729	160511_QHF_FH_JSI9i_2	33.782	12.023			1.144	1.0576	25.33	3	0	Plateau	1.5158	1.2996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86342	0.86065	NaN	1	0	Median	0.81047	0.81947	NaN	1	0	Median	280750000	136270000	144490000	121090000	50627000	70465000	0	0	0	102640000	55312000	47330000	57020000	30329000	26691000	1160	1898	1098	6899;6900;6901	9333	9333			1	
AEAEAQAEELSFPR	0	Unmodified	1546.7264	0.72635092	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.717	51.044	2	1.015E-33	46218	160511_QHF_FH_JSI11i_1	237.87	219.09			1.0487	1.0556	4.0805	4	4	Median	1.3543	1.0987	NaN	1	1	Median	0.8782	1.0083	NaN	1	1	Median	1.1186	1.0829	NaN	1	1	Median	0.98315	1.0289	NaN	1	1	Median	1068300000	539510000	528780000	227740000	94440000	133300000	324760000	181500000	143260000	280990000	129380000	151600000	234810000	134190000	100620000	1161	1002	1099	6902;6903;6904;6905	9334;9335;9336;9337	9334			4	
AEAEAWYQTK	1	Unmodified	1195.551	0.55095274	71;53;83;78	CON__P08729;CON__Q3KNV1;P08729;CON__Q5XKE5;Q5XKE5;CON__Q9DCV7	KRT7;KRT79	Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 79	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	3	1	1	31.5	30.811	2	1.4098E-06	27417	160511_QHF_FH_JSI10i_1	129.85	129.85		+	0.60813	0.4794	59.102	5	5	Median	0.6444	0.54404	17.888	2	2	Median	0.27468	0.32691	NaN	1	1	Median	0.20129	0.1973	NaN	1	1	Median	0.86555	0.92019	NaN	1	1	Median	5367500000	4201100000	1166400000	1136900000	878580000	258310000	1813400000	1448500000	364900000	1378500000	1128100000	250340000	1038700000	745850000	292870000	1162	53;71;78;83	1100	6906;6907;6908;6909;6910;6911;6912	9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348	9341			11	
AEAELGTFPR	0	Unmodified	1089.5455	0.54547343	5008	Q9NUP1	BLOC1S4	Biogenesis of lysosome-related organelles complex 1 subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.526	40.907	2	0.010912	37206	160511_QHF_FH_JSI12i_1	56.916	41.254			4.9549	5.1776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9549	5.1776	NaN	1	1	Median	120300000	24326000	95971000	0	0	0	0	0	0	0	0	0	120300000	24326000	95971000	1163	5008	1101	6913	9349	9349			1	
AEAELLQQQK	1	Unmodified	1156.6088	0.60880197	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.155	24.596	2	1.4326E-07	21173	160511_QHF_FH_JSI9i_1	135.79	88.709			0.86848	0.91525	22.765	4	1	Median	0.80971	0.66941	NaN	1	0	Median	0.85114	0.97523	NaN	1	0	Median	0.88616	0.85896	NaN	1	0	Median	1.0963	1.1482	NaN	1	1	Median	486190000	284370000	201830000	99304000	69201000	30102000	119970000	64889000	55084000	104830000	59553000	45279000	162080000	90723000	71360000	1164	2636	1102	6914;6915;6916;6917	9350;9351;9352;9353;9354;9355;9356;9357	9357			8	
AEAEMVYQTK	1	Unmodified	1168.5434	0.54342452	82	CON__Q6NXH9			yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	32.701	31.752	2	0.0028184	28541	160511_QHF_FH_JSI12i_1	57.59	3.8332		+	1.1142	1.2042	0.10776	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1142	1.2042	0.10776	2	1	Median	1484300000	658750000	825550000	0	0	0	0	0	0	0	0	0	1484300000	658750000	825550000	1165	82	1103	6918;6919	9358;9359	9359			2	
AEAENTSEVSTVLK	1	Unmodified	1476.7308	0.7307676	2731	Q16512	PKN1	Serine/threonine-protein kinase N1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.224	39.589	2	6.4793E-05	35621	160511_QHF_FH_JSI11i_1	117.23	99.369			1.152	1.2399	33.384	4	1	Median	2.5095	2.0522	NaN	1	1	Median	1.2357	1.4716	NaN	1	0	Median	1.074	1.0447	NaN	1	0	Median	0.94713	1.0064	NaN	1	0	Median	124660000	57778000	66881000	15803000	4693800	11109000	37093000	17471000	19622000	34248000	17317000	16931000	37515000	18295000	19220000	1166	2731	1104	6920;6921;6922;6923	9360;9361;9362;9363	9360			4	
AEAESLYQSK	1	Unmodified	1124.535	0.53496832	810	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	20.454	19.629	2	8.6079E-05	16569	160511_QHF_FH_JSI9i_1	86.18	64.717		+	1.4733	1.328	158.14	2	1	Median	0.53035	0.43405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0929	4.0629	NaN	1	1	Median	105000000	66264000	38736000	90515000	62309000	28206000	0	0	0	0	0	0	14485000	3954900	10530000	1167	810	1105	6924;6925	9364;9365	9365			2	
AEAESMYQIK	1	Unmodified	1168.5434	0.54342452	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.85	4		2			2	2			2	4	3	1	36.479	31.827	2	8.9844E-11	28583	160511_QHF_FH_JSI11i_1	141.48	58.475		+	1.0589	1.1483	13.574	9	1	Median	1.068	0.86557	NaN	1	0	Median	0.98029	1.1614	12.355	4	1	Median	1.0264	1.0078	7.5342	3	0	Plateau	1.1272	1.2051	NaN	1	0	Median	6495600000	2927300000	3568300000	1353100000	592120000	760970000	1996100000	932510000	1063600000	1684700000	755000000	929720000	1461700000	647630000	814070000	1168	51	1106	6926;6927;6928;6929;6930;6931;6932;6933;6934;6935	9366;9367;9368;9369;9370;9371;9372;9373;9374;9375;9376;9377;9378;9379;9380;9381	9367			16	
AEAESMYQIK	1	Oxidation (M)	1184.5383	0.53833914	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	1	1	3	26.27	22.053	2	3.7447E-05	17142	160511_QHF_FH_JSI12i_1	115.71	47.698		+	1.2024	2.36	40.925	6	2	Linear	1.9422	1.6125	NaN	1	1	Median	0.53762	0.62992	NaN	1	0	Median	1.0779	1.067	NaN	1	0	Median	1.9305	1.9972	35.063	3	1	Plateau	386040000	149720000	236330000	57034000	19874000	37160000	5326900	3514000	1812800	14094000	6376900	7716800	309590000	119950000	189640000	1169	51	1106	6936;6937;6938;6939;6940;6941;6942	9382;9383;9384;9385;9386;9387;9388;9389	9383		15	8	
AEAETLPSLSITK	1	Unmodified	1358.7293	0.72931103	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.33	5.47	3		1			2					3	1	2	64.605	61.029	2	6.0412E-07	54913	160511_QHF_FH_JSI11i_1	133.07	108.29			0.69707	0.78009	22.208	6	3	Median	NaN	NaN	NaN	0	0	Median	0.61884	0.72034	18.005	3	3	Median	0.86208	0.84481	NaN	1	0	Median	0.77798	0.84001	40.901	2	0	Median	1032100000	537690000	494450000	0	0	0	359080000	206270000	152800000	392040000	189810000	202220000	281030000	141600000	139420000	1170	678	1107	6943;6944;6945;6946;6947;6948	9390;9391;9392;9393;9394;9395;9396;9397	9390			8	
AEAGAGSATEFQFR	0	Unmodified	1440.6634	0.66335673	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.5	2	5	4				1	1		3	4	3	3	46.488	43.689	2	3.2206E-135	38228	160511_QHF_FH_JSI9i_2	282.95	268.83			1.188	1.1577	10.209	10	4	Median	1.3065	1.0964	7.6049	3	1	Plateau	1.0589	1.2844	9.8886	2	1	Median	0.97398	0.97952	12.215	3	1	Plateau	1.0641	1.1464	12.361	2	1	Median	1983600000	944580000	1039000000	254280000	111450000	142820000	766660000	370190000	396460000	324820000	159300000	165520000	637810000	303630000	334180000	1171	1595	1108	6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959;6960;6961	9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419	9413			22	
AEAGDAALSVAEWLR	0	Acetyl (Protein N-term)	1599.7893	0.78928553	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			102.18	102.15	2	1.5435E-05	92918	160511_QHF_FH_JSI10i_1	116.24	100.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1172	4191	1109	6962	9420	9420			1	
AEAGDNLGALVR	0	Unmodified	1184.6149	0.61494998	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.75	4	4	1			2	3			3	4	3	4	49.438	45.233	2	6.4435E-23	40206	160511_QHF_FH_JSI9i_1	177.57	140.88			0.9871	1.0128	6.5691	14	0	Median	1.1633	0.91977	10.263	3	0	Plateau	0.83	0.98712	5.2947	4	0	Median	1.0558	1.0383	3.9675	3	0	Median	0.97548	1.0507	6.3341	4	0	Median	6678600000	3321300000	3357200000	1298400000	562990000	735390000	1790200000	988570000	801630000	1758100000	826970000	931100000	1831900000	942790000	889110000	1173	1658	1110	6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976	9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445	9436			25	
AEAGEQPGTAER	0	Unmodified	1214.5527	0.55274365	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	7.6481	5.0204	2	2.389E-07	4747	160511_QHF_FH_JSI11i_1	131.12	53.018			0.91859	0.96838	11.348	6	1	Median	1.4507	1.1905	NaN	1	1	Median	0.73126	0.85643	NaN	1	0	Median	0.95801	0.9351	6.3845	2	0	Median	0.90836	0.96838	1.2673	2	0	Median	571220000	302550000	268680000	170470000	82092000	88377000	140800000	84464000	56331000	130960000	66895000	64067000	129000000	69095000	59902000	1174	1871	1111	6977;6978;6979;6980;6981;6982	9446;9447;9448;9449;9450;9451;9452;9453;9454;9455;9456	9447			11	
AEAGGGWEGSASYK	1	Unmodified	1368.5946	0.59460847	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.138	27.549	2	3.3986E-21	24226	160511_QHF_FH_JSI11i_1	169.89	145.94			0.93443	0.98395	8.817	4	0	Median	1.3733	1.1333	NaN	1	0	Median	0.8813	1.0219	NaN	1	0	Median	0.95822	0.93548	NaN	1	0	Median	0.91124	0.94744	NaN	1	0	Median	381770000	199180000	182580000	53974000	22765000	31209000	102130000	61430000	40695000	99869000	53380000	46490000	125800000	61609000	64188000	1175	3949	1112	6983;6984;6985;6986	9457;9458;9459;9460;9461;9462;9463;9464;9465	9458			9	
AEAGPEGVAPAPEGEK	1	Unmodified	1507.7155	0.71545188	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	6				6					1	4	3	4	31.095	26.167	2;3	4.7379E-15	23060	160511_QHF_FH_JSI11i_1	159.5	129.75			1.0335	1.0492	18.412	11	2	Median	1.4918	1.2146	NaN	1	0	Median	0.95169	1.0913	21.978	4	1	Median	1.1006	1.0492	10.937	3	0	Plateau	0.99965	1.0692	21.605	3	1	Median	1431700000	635150000	796520000	306300000	130750000	175550000	432890000	197990000	234900000	321160000	143990000	177170000	371320000	162410000	208910000	1176	5633	1113	6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998	9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486;9487;9488	9467			23	
AEAGVPAEFSIWTR	0	Unmodified	1532.7623	0.7623425	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.59	2	6	4					4		3	4	4	5	81.55	78.314	2;3	1.856E-06	69355	160511_QHF_FH_JSI12i_2	131.17	117.82			0.94009	1.0285	12.126	16	4	Median	1.1404	0.93157	11.685	3	0	Plateau	0.90908	1.0748	9.6198	4	3	Median	0.98842	1.0054	11.493	4	1	Median	0.92319	1.0424	16.636	5	0	Median	2644600000	1387200000	1257400000	57790000	25523000	32267000	557150000	299130000	258020000	960160000	482330000	477840000	1069500000	580220000	489270000	1177	1192	1114	6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014	9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502	9492			14	
AEAHHAEL	0	Unmodified	876.40898	0.40897995	4273	Q99470	SDF2	Stromal cell-derived factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		5.9748	5.6627	2	0.014498	3653	160511_QHF_FH_JSI10i_2	51.335	28.293			1.3357	1.4781	31.561	2	0	Median	NaN	NaN	NaN	0	0	Median	1.52	1.8477	NaN	1	0	Median	1.1738	1.1824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	621080000	360500000	260590000	0	0	0	253080000	145860000	107220000	368000000	214640000	153370000	0	0	0	1178	4273	1115	7015;7016	9503;9504	9504			2	
AEAISLQMVK	1	Unmodified	1088.59	0.58998078	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.182	53.52	2	0.00029008	48457	160511_QHF_FH_JSI11i_1	79.128	64.921			0.8479	0.94061	7.1472	4	0	Linear	1.0324	0.8363	NaN	1	0	Median	0.81373	0.93146	NaN	1	0	Median	0.96112	0.94985	NaN	1	0	Median	0.96333	0.98853	NaN	1	0	Median	336520000	175670000	160850000	50622000	22665000	27957000	117430000	67265000	50169000	103390000	59027000	44360000	65076000	26712000	38364000	1179	3699	1116	7017;7018;7019;7020	9505;9506;9507;9508;9509;9510	9505			6	
AEAIVYK	1	Unmodified	792.43815	0.43815481	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		19.569	19.058	2	0.0075894	16387	160511_QHF_FH_JSI11i_1	86.866	38.693			1.012	0.99025	8.0631	3	0	Median	1.2547	1.0341	NaN	1	0	Median	0.75221	0.88459	NaN	1	0	Median	1.012	0.99025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	310060000	138760000	171310000	112140000	51139000	61000000	113900000	49033000	64872000	84020000	38587000	45433000	0	0	0	1180	2115	1117	7021;7022;7023	9511;9512	9511			2	
AEAIVYKHGSGR	1	Acetyl (K)	1328.6837	0.68369824	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.499								8	9	3	5	5	4	26.909	18.082	2;3	5.9415E-10	10830	160513_QHF_FH_JSI10Kac_6	120.14	99.932			0.91378	1.0144	111.61	14	2	Median	3.811	3.2402	132.64	3	1	Plateau	0.93757	1.1156	174.25	4	1	Median	0.83152	0.81625	6.6535	3	0	Median	0.91378	0.99278	14.125	4	0	Median	178790000	78867000	99920000	29078000	6492600	22586000	41886000	11563000	30323000	57934000	32511000	25422000	49889000	28300000	21589000	1181	2115	1118	7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038;7039;7040	9513;9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532;9533;9534;9535	9535	2216		23	
AEALASAIASTK	1	Unmodified	1131.6136	0.61355299	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	42.763	39.861	2	0.00010672	34117	160511_QHF_FH_JSI12i_2	88.596	79.733			0.41935	0.43363	19.986	5	1	Median	0.41935	0.36382	NaN	1	0	Median	0.35009	0.43363	NaN	1	0	Median	0.40561	0.4068	22.731	2	1	Median	0.50292	0.56437	NaN	1	0	Median	383790000	258110000	125680000	78589000	59159000	19431000	79660000	53823000	25837000	161210000	102720000	58485000	64334000	42410000	21924000	1182	5049	1119	7041;7042;7043;7044;7045	9536;9537;9538;9539;9540;9541	9536			6	
AEALEDLVGFK	1	Unmodified	1190.6183	0.61830402	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	76.268	75.693	2	1.5757E-05	66753	160511_QHF_FH_JSI9i_2	106.2	79.685			1.0298	1.0118	51.821	3	2	Median	0.97795	0.86206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4991	1.5145	57.042	2	1	Median	NaN	NaN	NaN	0	0	Median	79353000	35767000	43587000	16672000	6674100	9998000	0	0	0	62681000	29093000	33589000	0	0	0	1183	1576	1120	7046;7047;7048;7049	9542;9543;9544;9545	9544			3	
AEALLYQILPHSVAEQLK	1	Unmodified	2022.115	0.11497676	1088	P16066;P20594	NPR1;NPR2	Atrial natriuretic peptide receptor 1;Atrial natriuretic peptide receptor 2	yes	no	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	98.449	98.251	3	9.9319E-05	86756	160511_QHF_FH_JSI10i_2	60.564	54.984			0.85676	0.88583	21.204	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74126	0.938	NaN	1	0	Median	0.90609	0.88583	NaN	1	0	Median	0.5582	0.63348	NaN	1	1	Median	35839000	18939000	16900000	0	0	0	11763000	6456300	5306800	13587000	6528800	7058200	10489000	5954100	4534800	1184	1088	1121	7050;7051;7052	9546;9547;9548	9548			3	
AEAPLPSPK	1	Unmodified	908.49673	0.49673232	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.895	24.564	2	0.00017327	21746	160511_QHF_FH_JSI12i_1	87.308	64.288			1.0678	1.1232	11.244	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79438	0.9551	NaN	1	0	Median	1.2439	1.1854	NaN	1	0	Median	1.0678	1.1232	NaN	1	0	Median	392250000	172790000	219460000	0	0	0	126500000	55970000	70529000	107920000	48199000	59719000	157830000	68623000	89207000	1185	2286	1122	7053;7054;7055	9549;9550;9551	9550			3	
AEAQGSTTLLVSYR	0	Unmodified	1494.7678	0.7678218	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			49.315	48.895	2	0.017331	44118	160511_QHF_FH_JSI10i_1	51.359	25.316			0.81193	0.96525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81193	0.96525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59824000	30078000	29746000	0	0	0	59824000	30078000	29746000	0	0	0	0	0	0	1186	3734	1123	7056	9552	9552			1	
AEAQIAAK	1	Unmodified	800.43922	0.43921744	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.68	4		1		1	3				2	2	3	2	10.341	6.8802	2	0.0016363	6729	160511_QHF_FH_JSI12i_1	86.833	42.222			0.96924	1.0087	28.019	9	1	Median	1.4524	1.1676	69.278	2	1	Median	0.90868	1.0664	23.669	2	0	Median	0.98369	1.1531	13.098	3	0	Plateau	0.86778	0.94107	9.808	2	0	Median	5015400000	2810200000	2205100000	1179400000	609630000	569720000	1312600000	783860000	528730000	1145400000	572350000	573010000	1378100000	844400000	533670000	1187	773	1124	7057;7058;7059;7060;7061;7062;7063;7064;7065	9553;9554;9555;9556;9557;9558;9559;9560;9561;9562	9554			10	
AEAQIAAKNLDK	2	Acetyl (K)	1312.6987	0.69867961	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.829				1	5	7	3				6	4	6	45.296	36.019	2;3	3.861E-31	19989	160513_QHF_FH_JSI12Kac_3	186.17	138.56			0.83372	0.98638	138.74	13	2	Median	NaN	NaN	NaN	0	0	Median	0.90417	1.02	9.0662	5	0	Median	0.83239	0.82121	16.411	3	0	Median	0.82183	0.88676	238.83	5	2	Median	503160000	254550000	248610000	0	0	0	171910000	87416000	84492000	132880000	72235000	60646000	198370000	94903000	103470000	1188	773	1125	7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081	9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578;9579;9580;9581;9582;9583;9584	9574	380		22	
AEAQQVEALPGPSLDQWHR	0	Unmodified	2131.0447	0.044665367	3019	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	63.867	63.247	3	7.1255E-06	55344	160511_QHF_FH_JSI11i_2	82.765	76.498			1.0742	1.091	7.3794	7	0	Median	1.2637	1.0706	NaN	1	0	Median	0.95126	1.146	NaN	1	0	Median	1.0983	1.0635	7.7305	3	0	Plateau	1.0709	1.1615	2.1515	2	0	Median	732370000	377610000	354770000	94923000	43929000	50993000	146010000	76271000	69734000	289750000	155990000	133760000	201690000	101420000	100280000	1189	3019	1126	7082;7083;7084;7085;7086;7087;7088	9585;9586;9587;9588;9589;9590;9591;9592;9593;9594	9590			10	
AEASGGLGGLTR	0	Unmodified	1087.5622	0.56218613	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	28.233	26.944	2	0.0079332	22640	160511_QHF_FH_JSI12i_2	50.108	3.6456			1.1069	1.1689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1069	1.1689	NaN	1	1	Median	17188000	8047200	9141200	0	0	0	0	0	0	0	0	0	17188000	8047200	9141200	1190	4495	1127	7089;7090	9595;9596	9596			2	
AEASIQAGAGDGEWEESEVK	1	Unmodified	2061.9127	0.91270772	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	49.551	48.871	2;3	1.4349E-82	44190	160511_QHF_FH_JSI11i_1	292.8	275.59			1.1013	0.95893	15.607	8	0	Median	1.1407	0.93445	7.5973	2	0	Median	0.76404	0.89604	2.636	2	0	Median	1.2084	1.1757	8.1857	2	0	Median	1.0693	1.1024	23.663	2	0	Median	826340000	417010000	409330000	144780000	69902000	74882000	258050000	143840000	114210000	186850000	80849000	106000000	236650000	122420000	114240000	1191	2286	1128	7091;7092;7093;7094;7095;7096;7097;7098	9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612	9600			16	
AEASPHPGR	0	Acetyl (Protein N-term)	962.45699	0.45699277	4462	Q9BV68	RNF126	E3 ubiquitin-protein ligase RNF126	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	8.14	6.2	3					2	2				1	3	3	9.4604	5.6349	2	0.00024031	6030	160511_QHF_FH_JSI10i_1	84.368	65.965			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1192	4462	1129	7099;7100;7101;7102;7103;7104;7105	9613;9614;9615;9616;9617;9618;9619	9616			7	
AEASQLGHK	1	Unmodified	939.47739	0.47739386	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.23	2	8	2					3		3	3	4	5	5.7757	3.6549	2;3	4.3365E-08	3233	160511_QHF_FH_JSI12i_2	145.72	101.03			1.5126	1.4336	22.669	15	2	Median	1.6832	1.4336	6.2132	3	1	Median	0.87546	1.0949	25.27	3	0	Plateau	1.1837	1.1973	34.166	4	0	Median	1.5192	1.5711	20.747	5	1	Median	2614600000	1147700000	1466900000	536510000	219400000	317110000	491180000	239570000	251600000	812130000	389040000	423080000	774780000	299700000	475080000	1193	5616	1130	7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120	9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636	9621			17	
AEASSGDHPTDTEMK	1	Oxidation (M)	1590.6468	0.64677997	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.16	5.28	14					5				5	3	5	6	7.1332	4.9265	2;3	2.8825E-40	3233	160511_QHF_FH_JSI11i_1	208.95	192.32			0.8892	0.95529	24.693	18	1	Median	1.2684	1.0522	41.098	5	1	Median	0.72706	0.88753	5.2687	3	0	Plateau	1.1238	1.0971	27.541	5	0	Median	0.87266	0.9447	3.9031	5	0	Median	2493000000	1217400000	1275600000	648610000	306190000	342410000	376920000	219470000	157450000	850700000	396690000	454010000	616800000	295050000	321750000	1194	2193	1131	7121;7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139	9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663	9639		1831	27	
AEASSGDHPTDTEMK	1	Unmodified	1574.6519	0.65186535	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	3	4	3	10.725	8.0539	2;3	3.4721E-98	6894	160511_QHF_FH_JSI11i_1	263.74	236.95			1.0855	1.0783	26.73	12	2	Median	0.99701	0.80625	6.6379	2	0	Median	0.68922	0.82026	7.7305	3	1	Plateau	1.2141	1.1842	28.905	4	1	Median	1.1365	1.1967	2.9879	3	0	Plateau	8095400000	3966000000	4129300000	1421100000	527600000	893500000	2279000000	1167800000	1111200000	2245700000	1063300000	1182400000	2149600000	1207300000	942320000	1195	2193	1131	7140;7141;7142;7143;7144;7145;7146;7147;7148;7149;7150;7151	9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685	9667			22	
AEASSGDHPTDTEMKEEQK	2	Unmodified	2088.8906	0.89059207	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.07	0.258	13	1								3	5	3	3	10.601	10.217	2;3;4	1.4727E-82	8018	160511_QHF_FH_JSI12i_1	220.34	214.53			1.0313	0.98207	30.48	14	2	Median	1.2241	0.99997	10.832	3	0	Plateau	0.65899	0.77987	40.905	5	2	Median	1.1447	1.1213	30.11	3	0	Median	0.91771	0.9801	13.65	3	0	Plateau	3494900000	1754000000	1740900000	630600000	269200000	361400000	1005800000	624310000	381460000	735950000	326180000	409770000	1122600000	534320000	588230000	1196	2193	1132	7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165	9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702;9703;9704;9705;9706;9707	9691			22	
AEASSGDHPTDTEMKEEQK	2	Oxidation (M)	2104.8855	0.88550669	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	1				By MS/MS	1	0	1												1	6.4924	6.1463	3	0.0031553	4141	160511_QHF_FH_JSI12i_1	45.618	35.868			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1197	2193	1132	7166	9708	9708		1831	1	
AEASSGDHPTDTEMKEEQK	2	Acetyl (K)	2130.9012	0.90115676	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	25.338	17.905	3	0.034554	11224	160513_QHF_FH_JSI11Kac_3	30.684	27.346			0.33399	0.32845	70.301	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1093	1.3258	NaN	1	0	Median	0.33399	0.32845	NaN	1	0	Median	0.70511	0.76628	NaN	1	0	Median	10922000	6909400	4013000	0	0	0	2564100	1177000	1387200	5096400	3737900	1358500	3261900	1994600	1267300	1198	2193	1132	7167;7168;7169	9709;9710	9709			2	
AEAVESAQAGDK	1	Unmodified	1174.5466	0.54659564	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	5.6	4	2			3	3				1	3	3	5	10.671	6.1654	2	8.8294E-31	3982	160513_QHF_FH_JSI11Kac_2	178.67	110.44			0.93799	0.91505	22.541	10	2	Median	1.0386	0.84675	NaN	1	0	Median	0.60635	0.71997	27.174	3	1	Median	1.0057	0.98885	14.562	3	0	Median	0.96975	1.0065	34.372	3	1	Median	1904500000	950010000	954500000	437800000	202230000	235570000	461010000	279080000	181930000	485480000	242720000	242760000	520220000	225970000	294250000	1199	2545	1133	7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181	9711;9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726	9716			16	
AEAYQKYGDAAK	2	Acetyl (K)	1355.6357	0.635745	2523	Q14254	FLOT2	Flotillin-2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.93	26.043	2	0.013374	15495	160513_QHF_FH_JSI11Kac_3	61.353	49.128			2.8875	2.7393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8875	2.7393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2233100	1538700	694490	0	0	0	0	0	0	2233100	1538700	694490	0	0	0	1200	2523	1134	7182	9727	9727	2526		1	
AECLAMLGR	0	Unmodified	1019.4892	0.48922088	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	43.448	42.52	2	0.01132	36416	160511_QHF_FH_JSI12i_2	69.198	21.455			1.0194	1.0712	38.974	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82587	0.81316	NaN	1	1	Median	1.2582	1.4111	NaN	1	1	Median	86502000	42416000	44085000	0	0	0	0	0	0	50086000	26400000	23686000	36416000	16017000	20399000	1201	4294	1135	7183;7184	9728;9729	9728			2	
AEDADMRNELEEMQR	0	Acetyl (Protein N-term)	1877.7884	0.7883756	1919	P60880	SNAP25	Synaptosomal-associated protein 25	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.315	59.669	2	1.3175E-07	54208	160511_QHF_FH_JSI12i_1	138.02	78.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1202	1919	1136	7185;7186;7187;7188	9730;9731;9732;9733	9731			4	
AEDAVEAIR	0	Unmodified	972.48762	0.4876242	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	26.492	22.567	2	1.8447E-05	19741	160511_QHF_FH_JSI10i_1	107.69	70.933			0.73119	0.9257	28.642	7	0	Plateau	1.0684	0.88588	NaN	1	0	Median	0.53986	0.61816	44.55	2	0	Median	0.85734	0.82573	34.641	2	0	Median	0.74457	0.79595	21.654	2	0	Median	862810000	428490000	434310000	200520000	94702000	105820000	202180000	115640000	86542000	213240000	101110000	112120000	246870000	117040000	129830000	1203	4498;4343	1137	7189;7190;7191;7192;7193;7194;7195	9734;9735;9736;9737;9738;9739;9740;9741;9742	9739			9	
AEDAYTSR	0	Unmodified	911.39847	0.39847484	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		6.8942	6.5639	2	0.023633	4243	160511_QHF_FH_JSI11i_1	43.083	25.097			0.98547	1.1163	4.5005	3	0	Plateau	1.3685	1.1163	NaN	1	0	Median	0.98547	1.1679	NaN	1	0	Median	1.0981	1.0673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	444430000	206390000	238040000	125800000	55999000	69797000	173870000	84869000	88997000	144770000	65525000	79245000	0	0	0	1204	485	1138	7196;7197;7198	9743	9743			1	
AEDDAYTTFISETGK	1	Unmodified	1646.7312	0.73116153	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	62.792	62.037	2	5.8993E-27	56246	160511_QHF_FH_JSI10i_1	146.36	131.15			1.2066	1.0759	3.3464	2	2	Median	1.3201	1.1016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1028	1.0507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61772000	20789000	40983000	23515000	8039600	15475000	0	0	0	38257000	12750000	25508000	0	0	0	1205	4217	1139	7199;7200;7201;7202;7203	9744;9745;9746;9747;9748	9747			5	
AEDDSFLQWVLLLIPVTAFGLGTWQVQR	0	Unmodified	3201.6863	0.68627101	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.25	100.53	3	5.5134E-16	59598	160513_QHF_FH_JSI10Kac_6	143.89	127.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51841000	51841000	0	0	0	0	51841000	51841000	0	0	0	0	0	0	0	1206	2678	1140	7204	9749	9749			1	
AEDEEELLR	0	Unmodified	1102.5142	0.51423288	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.431	31.166	2	0.011918	27285	160511_QHF_FH_JSI9i_1	57.859	44.405			2.5003	2.1227	NaN	1	1	Median	2.5003	2.1227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29265000	14048000	15217000	29265000	14048000	15217000	0	0	0	0	0	0	0	0	0	1207	2787	1141	7205	9750	9750			1	
AEDEPDAK	1	Unmodified	873.37159	0.37159139	1618	P48382	RFX5	DNA-binding protein RFX5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.022	12.893	3	0.046856	10480	160511_QHF_FH_JSI11i_1	15.881	2.8445			0.8614	0.8359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8614	0.8359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75861000	35803000	40058000	0	0	0	0	0	0	75861000	35803000	40058000	0	0	0	1208	1618	1142	7206	9751	9751			1	
AEDEVQR	0	Unmodified	845.38791	0.38791015	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	5.3534	2.7315	2	0.00040936	1909	160513_QHF_FH_JSI11Kac_3	116.54	59.261			1.0826	1.1312	23.304	6	0	Median	0.85871	0.69722	NaN	1	0	Median	1.218	1.4141	NaN	1	0	Median	1.1213	1.1047	2.4952	2	0	Median	1.0549	1.1396	0.20689	2	0	Median	4208500000	2002500000	2206000000	634930000	341100000	293830000	1065400000	459040000	606320000	1415400000	670050000	745340000	1092800000	532300000	560510000	1209	954;1416	1143	7207;7208;7209;7210;7211;7212	9752;9753;9754;9755;9756;9757;9758;9759;9760	9756			9	
AEDEVQRER	0	Unmodified	1130.5316	0.53161428	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.764	7	7	4							4	3	5	6	5.3647	5.0992	2;3	7.1851E-41	2876	160511_QHF_FH_JSI12i_2	218.55	145.3			1.0962	1.1587	8.71	17	1	Median	1.2914	1.1499	4.0718	3	0	Plateau	0.91216	1.0869	5.7453	3	0	Plateau	1.2458	1.2495	6.867	5	1	Median	1.007	1.0807	4.5796	6	0	Median	9246500000	4307100000	4939400000	1498000000	614760000	883210000	1750900000	943990000	806940000	2698500000	1137700000	1560800000	3299100000	1610600000	1688500000	1210	954	1144	7213;7214;7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230	9761;9762;9763;9764;9765;9766;9767;9768;9769;9770;9771;9772;9773;9774;9775;9776;9777;9778;9779	9765			19	
AEDFQIEGYNPHPTIK	1	Unmodified	1857.8897	0.88972785	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	2	3	1	55.036	54.226	2;3	6.9084E-06	47713	160511_QHF_FH_JSI10i_2	101.67	91.201			0.97566	0.94759	14.097	7	1	Median	1.0277	0.87457	NaN	1	0	Median	0.94323	1.1412	14.516	2	1	Median	0.97942	0.9839	10.415	3	0	Plateau	0.83923	0.94431	NaN	1	0	Median	1095300000	612620000	482680000	145340000	77126000	68210000	205800000	118860000	86945000	476190000	272690000	203500000	267980000	143950000	124020000	1211	815	1145	7231;7232;7233;7234;7235;7236;7237	9780;9781;9782;9783;9784;9785;9786;9787;9788;9789	9787			10	
AEDGATPSPSNETPK	1	Unmodified	1499.674	0.673981	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	5.07	4		1	3	3					1	4	3	3	19.304	14.763	2	5.3261E-52	12753	160511_QHF_FH_JSI10i_1	220.23	175.07			1.055	1.0607	23.037	10	0	Median	1.0566	0.85592	NaN	1	0	Median	0.68604	0.75278	6.9331	3	0	Median	1.2644	1.2073	18.18	3	0	Median	1.0784	1.1423	7.4322	3	0	Median	2929500000	1418700000	1510800000	892210000	410900000	481310000	636740000	344750000	291990000	595470000	277400000	318080000	805100000	385650000	419450000	1212	1329	1146	7238;7239;7240;7241;7242;7243;7244;7245;7246;7247;7248	9790;9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802;9803;9804;9805;9806;9807;9808;9809;9810;9811;9812;9813	9801			24	
AEDGATPSPSNETPKK	2	Unmodified	1627.7689	0.76894402	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	9					3				2	3	4	3	13.261	10.984	2;3	7.6241E-31	8913	160511_QHF_FH_JSI11i_1	192.4	176			1.1001	0.99329	34.052	11	1	Median	1.0229	0.83775	13.125	2	0	Median	0.73062	0.86344	9.9607	3	0	Plateau	1.3445	1.2827	37.557	3	1	Median	1.169	1.2518	13.259	3	0	Plateau	1030500000	526710000	503820000	249240000	138330000	110910000	279850000	168510000	111330000	189450000	76836000	112610000	311990000	143030000	168970000	1213	1329	1147	7249;7250;7251;7252;7253;7254;7255;7256;7257;7258;7259;7260	9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831	9815			18	
AEDGENYDIK	1	Unmodified	1152.4935	0.49349744	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	20.225	18.393	2	2.02E-11	15632	160511_QHF_FH_JSI11i_1	152.28	130.13			0.78456	0.91001	13.387	5	1	Median	1.1608	0.96428	NaN	1	0	Median	0.78456	0.91001	NaN	1	0	Median	0.7793	0.76876	NaN	1	0	Median	0.79352	0.84628	20.601	2	1	Median	735040000	400140000	334900000	162190000	71345000	90843000	207750000	115870000	91884000	202890000	119770000	83123000	162210000	93161000	69049000	1214	505	1148	7261;7262;7263;7264;7265	9832;9833;9834;9835;9836;9837	9832			6	
AEDGENYDIKK	2	Unmodified	1280.5885	0.58846046	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	14.53	13.832	2;3	0.00044976	11199	160511_QHF_FH_JSI11i_1	85.355	65.214			1.3374	1.2244	27.695	2	2	Median	1.2295	1.0067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4548	1.4893	NaN	1	1	Median	141270000	62761000	78508000	72502000	31427000	41075000	0	0	0	0	0	0	68766000	31334000	37432000	1215	505	1149	7266;7267;7268;7269	9838;9839;9840;9841	9839			4	
AEDGENYDIKK	2	Acetyl (K)	1322.599	0.59902514	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.753	25.866	2	0.0030243	15366	160513_QHF_FH_JSI11Kac_3	88.496	57.932			0.97747	0.97891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97747	0.97891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5451400	2773500	2677900	0	0	0	0	0	0	5451400	2773500	2677900	0	0	0	1216	505	1149	7270	9842	9842	252		1	
AEDGHAVAK	1	Unmodified	896.43519	0.4351947	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	4.6204	4.2726	2;3	3.9541E-06	2223	160511_QHF_FH_JSI10i_1	121.05	96.23			1.1319	1.1753	68.132	6	3	Median	1.1081	0.90172	NaN	1	0	Median	0.60488	0.71954	88.315	2	1	Median	1.6813	1.6778	69.262	2	1	Median	1.7316	1.9498	NaN	1	1	Median	793220000	385640000	407590000	55109000	32169000	22940000	348480000	184840000	163640000	239320000	99456000	139870000	150310000	69169000	81137000	1217	2207	1150	7271;7272;7273;7274;7275;7276;7277	9843;9844;9845;9846;9847;9848;9849	9846			7	
AEDGSVIDYELIDQDAR	0	Unmodified	1907.8749	0.87486565	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	2.16	25	4				1				14	6	5	5	72.168	71.161	2;3	4.6454E-237	64117	160511_QHF_FH_JSI11i_1	348.78	307.09			1.0326	0.97295	15.36	21	7	Median	1.1744	0.97295	18.574	9	5	Median	0.76463	0.88652	19.402	5	2	Median	0.98842	0.9544	4.2011	3	0	Plateau	0.94372	1.0044	3.3205	4	0	Median	6442000000	3360200000	3081800000	967130000	447460000	519670000	1934400000	1068100000	866310000	1665500000	870150000	795390000	1874900000	974470000	900470000	1218	870	1151	7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307	9850;9851;9852;9853;9854;9855;9856;9857;9858;9859;9860;9861;9862;9863;9864;9865;9866;9867;9868;9869;9870;9871;9872;9873;9874;9875;9876;9877;9878;9879;9880;9881;9882;9883;9884;9885;9886;9887;9888;9889;9890;9891;9892;9893;9894;9895;9896;9897;9898;9899;9900;9901;9902;9903;9904	9851			55	
AEDGSVIDYELIDQDARDLYDAGVK	1	Unmodified	2769.2981	0.29809868	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	14	2								3	6	4	3	99.971	99.866	2;3;4	1.0352E-91	90140	160511_QHF_FH_JSI10i_1	252.84	245.81			1.156	1.0984	11.817	16	1	Median	1.2056	0.99027	3.1936	3	1	Median	0.9149	1.0276	7.0445	6	0	Median	1.2907	1.2206	7.4965	4	0	Median	1.2214	1.2966	5.2273	3	0	Median	2573800000	1217800000	1355900000	246070000	118020000	128050000	905430000	462890000	442540000	456340000	195460000	260880000	965920000	441450000	524470000	1219	870	1152	7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321;7322;7323	9905;9906;9907;9908;9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919;9920;9921;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938	9922			33	
AEDIPQMDDAFSQTVK	1	Unmodified	1793.8142	0.81417965	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								5	3	2	2	67.239	66.54	2;3	2.7724E-10	60573	160511_QHF_FH_JSI11i_1	168.61	155.98			0.88475	0.87323	20.276	12	4	Median	0.81652	0.68294	16.706	5	2	Median	0.7227	0.88318	10.941	3	1	Plateau	0.98312	0.96964	13.874	2	0	Median	0.96037	0.99638	0.302	2	1	Median	1071400000	542270000	529100000	475470000	224940000	250530000	307400000	166890000	140510000	188160000	92817000	95340000	100340000	57626000	42719000	1220	5161	1153	7324;7325;7326;7327;7328;7329;7330;7331;7332;7333;7334;7335	9939;9940;9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951	9942			13	
AEDKEWMPVTK	2	Acetyl (K)	1374.649	0.64895222	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	62.982	53.568	2	2.948E-05	27942	160513_QHF_FH_JSI11Kac_3	104.52	84.736			0.044098	0.042576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.044098	0.042576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2401900	2376700	25179	0	0	0	0	0	0	1617900	1592700	25179	783980	783980	0	1221	1084	1154	7336;7337	9952;9953	9952	926;927		2	
AEDKPSTDLSAPVNGEATSQK	2	Unmodified	2144.0233	0.023320802	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.202	31.599	3	2.2838E-09	28097	160511_QHF_FH_JSI10i_1	102.67	90.008			1.0213	1.0174	4.2929	4	0	Median	1.2684	1.0372	NaN	1	0	Median	0.83746	0.99802	NaN	1	0	Median	1.0085	0.96778	NaN	1	0	Median	1.0342	1.0672	NaN	1	0	Median	476400000	239730000	236660000	124380000	51914000	72462000	132440000	71926000	60517000	108530000	60012000	48513000	111050000	55882000	55172000	1222	3277	1155	7338;7339;7340;7341	9954;9955;9956;9957;9958;9959;9960	9958			7	
AEDLPLRK	1	Unmodified	940.53418	0.53418046	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	19.697	19.704	2;3	0.00095506	15978	160511_QHF_FH_JSI12i_3	96.19	64.236			1.0954	1.0678	16.22	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.15	1.0895	4.7675	2	0	Median	0.90762	0.92455	22.295	2	0	Median	773420000	386840000	386580000	0	0	0	0	0	0	371540000	188970000	182570000	401880000	197870000	204010000	1223	4399	1156	7342;7343;7344;7345	9961;9962;9963;9964;9965	9964			5	
AEDLVPTLVSR	0	Unmodified	1198.6558	0.65575216	3476	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		60.745	60.313	2	0.040093	54761	160511_QHF_FH_JSI11i_1	51.445	36.294			0.57312	0.55094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57312	0.55094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36500000	20827000	15673000	0	0	0	0	0	0	36500000	20827000	15673000	0	0	0	1224	3476	1157	7346	9966	9966			0	
AEDMETK	1	Acetyl (Protein N-term)	864.3535	0.35349848	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	17.175	15.322	2	0.0012151	13339	160511_QHF_FH_JSI10i_1	81.297	80.383			1.1097	1.0886	21.28	5	0	Median	0.92386	0.76072	NaN	1	0	Median	1.1578	1.3703	NaN	1	0	Median	1.145	1.1102	2.7849	2	0	Median	1.0277	1.0792	NaN	1	0	Median	586460000	266090000	320370000	139870000	68371000	71504000	133570000	55293000	78282000	156090000	70906000	85181000	156920000	71521000	85399000	1225	1061	1158	7347;7348;7349;7350;7351	9967;9968;9969;9970;9971;9972;9973;9974	9970			8	
AEDMETK	1	Acetyl (Protein N-term);Oxidation (M)	880.34841	0.3484131	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	1	1	0	By matching		By MS/MS	By MS/MS	6	5	2			2						1		2	1	11.52	7.4644	2	0.015161	13333	160511_QHF_FH_JSI11i_1	46.426	37.185			1.0387	0.90953	9.4349	2	0	Median	1.1914	0.97228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90557	0.85083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101490000	46683000	54809000	47982000	22704000	25278000	0	0	0	50959000	23979000	26980000	2550500	0	2550500	1226	1061	1158	7352;7353;7354;7355	9975;9976;9977	9975		697	3	
AEDNADTLALVFEAPNQEK	1	Unmodified	2073.9855	0.98547873	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	3	2	2	83.407	82.936	2;3	8.3373E-152	75727	160511_QHF_FH_JSI11i_1	341.27	327.26			0.87059	0.83128	10.528	10	6	Median	0.91232	0.73699	9.1361	3	2	Median	0.683	0.8276	5.6549	3	2	Median	0.83634	0.82022	7.5826	2	1	Median	0.90318	0.96703	5.9818	2	1	Median	2670500000	1435700000	1234800000	553940000	291160000	262780000	946570000	529310000	417260000	493570000	260370000	233200000	676440000	354860000	321580000	1227	1010	1159	7356;7357;7358;7359;7360;7361;7362;7363;7364;7365	9978;9979;9980;9981;9982;9983;9984;9985;9986;9987;9988;9989;9990;9991;9992;9993;9994;9995;9996;9997;9998;9999;10000;10001;10002;10003;10004;10005	9984			28	
AEDNFEDIITKPPVRK	2	Unmodified	1870.9789	0.97887721	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	3	1		56.883	56.014	4	3.1078E-05	46894	160511_QHF_FH_JSI10i_3	84.874	73.603			0.97679	1.0405	21.671	5	0	Median	1.1968	1.0405	NaN	1	0	Median	0.92096	1.063	24.782	3	0	Median	0.97679	0.90895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	285040000	141790000	143250000	33813000	15987000	17826000	153310000	77403000	75910000	97915000	48402000	49513000	0	0	0	1228	5725	1160	7366;7367;7368;7369;7370	10006;10007;10008;10009;10010;10011;10012	10008			6	
AEDQHLVEMEDTLNK	1	Unmodified	1770.8094	0.80942862	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.429	50.755	3	0.00023919	45826	160511_QHF_FH_JSI11i_1	65.231	56.63			0.89817	0.86125	13.328	4	0	Median	1.0855	0.87748	NaN	1	0	Median	0.71442	0.84532	NaN	1	0	Median	0.78561	0.76545	NaN	1	0	Median	1.0269	1.053	NaN	1	0	Median	282910000	152230000	130690000	49336000	22433000	26903000	94098000	53272000	40826000	58418000	29049000	29370000	81061000	47472000	33589000	1229	1360	1161	7371;7372;7373;7374	10013;10014;10015;10016	10013			3	
AEDSGEYHCVYHFVSAPK	1	Unmodified	2094.9105	0.91053965	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	45.912	45.671	3	9.2115E-08	38939	160511_QHF_FH_JSI12i_3	117.67	108.96			1.1957	1.1829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1957	1.1829	NaN	1	1	Median	30262000	10543000	19718000	0	0	0	0	0	0	0	0	0	30262000	10543000	19718000	1230	5702	1162	7375;7376	10017;10018;10019;10020	10018			4	
AEDTISILPDDPR	0	Unmodified	1440.7096	0.70963822	3762	Q8WUH1	CHURC1	Protein Churchill	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	1	2		61.249	60.563	2	6.4871E-06	53721	160511_QHF_FH_JSI9i_1	127.87	111.98			1.2603	1.5687	25.531	5	4	Linear	1.1745	0.96157	26.627	2	2	Median	1.2834	1.5382	NaN	1	0	Median	1.0978	1.0663	19.82	2	2	Median	NaN	NaN	NaN	0	0	Median	403590000	161770000	241820000	157880000	68751000	89126000	78064000	29546000	48518000	167650000	63471000	104170000	0	0	0	1231	3762	1163	7377;7378;7379;7380;7381	10021;10022;10023;10024;10025	10024			5	
AEDYEENLQVMR	0	Unmodified	1495.6613	0.66130782	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		48.641	48.021	2	0.00025099	42745	160511_QHF_FH_JSI9i_1	77.288	70.904			1.1877	1.2219	13.864	4	3	Median	1.4519	1.1922	NaN	1	0	Median	1.1643	1.3668	12.371	2	2	Median	1.1142	1.0695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	173320000	81280000	92040000	47250000	20652000	26598000	94065000	46632000	47434000	32004000	13996000	18008000	0	0	0	1232	2186	1164	7382;7383;7384;7385	10026;10027;10028;10029	10029			4	
AEEAGGTRLEPLKPLK	2	Acetyl (K)	1749.9625	0.96249887	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							4	4		2	2	2	2	61.403	50.631	3	0.00010536	25705	160513_QHF_FH_JSI12Kac_5	97.417	68.405			0.97895	1.0579	20.082	8	0	Median	0.93119	0.96041	20.678	2	0	Median	0.75526	0.90047	16.203	2	0	Median	1.163	1.1522	25.06	2	0	Median	1.1333	1.2281	14.511	2	0	Median	664540000	322090000	342450000	98485000	42962000	55523000	185350000	103970000	81382000	142580000	65005000	77575000	238130000	110160000	127970000	1233	5403	1165	7386;7387;7388;7389;7390;7391;7392;7393	10030;10031;10032;10033;10034;10035;10036;10037;10038;10039;10040	10038	3397		11	
AEEDAALQAK	1	Unmodified	1044.5088	0.50875357	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	14.434	14.099	2	8.8961E-10	11663	160511_QHF_FH_JSI10i_1	137.14	89.286			1.0156	1.1022	15.287	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0613	1.228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97189	0.98923	NaN	1	0	Median	381750000	183840000	197910000	0	0	0	205410000	97950000	107460000	0	0	0	176340000	85890000	90449000	1234	2409	1166	7394;7395;7396	10041;10042;10043;10044;10045	10044			5	
AEEDEILNR	0	Unmodified	1087.5146	0.51456723	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.725	25.694	2	1.827E-23	22437	160511_QHF_FH_JSI9i_1	194.2	182.98			1.071	1.0693	14.164	7	0	Median	1.071	0.87615	NaN	1	0	Median	0.74376	0.88049	3.2893	2	0	Median	1.106	1.073	0.48881	2	0	Median	1.107	1.1885	3.4684	2	0	Median	3285900000	1674200000	1611800000	696360000	330410000	365950000	942550000	561390000	381160000	1003600000	474620000	528970000	643440000	307760000	335680000	1235	1299	1167	7397;7398;7399;7400;7401;7402;7403	10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059	10054			14	
AEEDKLEQIK	2	Unmodified	1201.619	0.6190323	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	22.138	21.635	3	0.054295	18961	160511_QHF_FH_JSI12i_1	29.807	22.083			2.1873	2.2955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1873	2.2955	NaN	1	1	Median	42289000	16435000	25854000	0	0	0	0	0	0	0	0	0	42289000	16435000	25854000	1236	1035	1168	7404	10060	10060			1	
AEEDPAKFK	2	Acetyl (K)	1075.5186	0.51858998	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	33.881	25.252	2	0.0065436	15028	160513_QHF_FH_JSI11Kac_3	69.812	43.707			0.62739	0.61308	42.586	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1835	1.3869	NaN	1	0	Median	0.61625	0.59907	NaN	1	0	Median	0.94037	1.0326	NaN	1	0	Median	9062000	5756200	3305800	0	0	0	2050400	1368000	682390	4193300	3139500	1053900	2818300	1248800	1569500	1237	2145	1169	7405;7406;7407	10061;10062	10061	2242		2	
AEEDTQFNYHR	0	Unmodified	1408.6008	0.60075648	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.5	3.97		7					1			3		2	3	20.612	18.939	2;3	1.1363E-23	15405	160511_QHF_FH_JSI11i_2	145.46	144.47			1.089	1.0947	20.456	8	4	Median	1.1334	0.99989	10.73	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2565	1.2919	26.573	2	0	Median	1.1091	1.2234	23.974	3	1	Plateau	518050000	232890000	285170000	220030000	96807000	123220000	0	0	0	193370000	86937000	106430000	104660000	49145000	55519000	1238	2560	1170	7408;7409;7410;7411;7412;7413;7414;7415	10063;10064;10065;10066;10067;10068;10069;10070;10071;10072;10073;10074	10072			12	
AEEDVEPECIMEK	1	Unmodified	1577.6589	0.65892456	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			48.24	47.816	2	0.014342	42951	160511_QHF_FH_JSI10i_1	66.262	34.122			1.5146	1.7211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5146	1.7211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31297000	14868000	16429000	0	0	0	31297000	14868000	16429000	0	0	0	0	0	0	1239	5346	1171	7416	10075	10075			0	
AEEEFNIEK	1	Unmodified	1107.5084	0.50841922	1455	P36543;Q96A05	ATP6V1E1;ATP6V1E2	V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2	yes	no	0	0	0	0	By MS/MS				1	0	1									1				34.557	33.311	2	0.0004336	29158	160511_QHF_FH_JSI9i_1	80.787	36.98			1.6876	1.4042	NaN	1	0	Median	1.6876	1.4042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97968000	47882000	50085000	97968000	47882000	50085000	0	0	0	0	0	0	0	0	0	1240	1455	1172	7417	10076	10076			1	
AEEEIMKK	2	Unmodified	976.48993	0.48993238	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	10.75	10.549	2	0.0026326	8190	160511_QHF_FH_JSI12i_2	84.498	33.794			0.7842	0.81371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7842	0.81371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21546000	15365000	6181400	0	0	0	0	0	0	21546000	15365000	6181400	0	0	0	1241	132	1173	7418;7419	10077;10078	10077			2	
AEEELGELEAK	1	Unmodified	1216.5823	0.58231244	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	38.083	37.639	2	4.7043E-06	33865	160511_QHF_FH_JSI11i_1	115.78	100.14			0.71381	0.71729	11.473	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68615	0.66139	NaN	1	1	Median	0.74259	0.7779	NaN	1	1	Median	119250000	64999000	54249000	0	0	0	0	0	0	73460000	40564000	32896000	45789000	24435000	21353000	1242	5479	1174	7420;7421	10079;10080	10079			2	
AEEEVAK	1	Unmodified	774.37595	0.37594848	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		9.8812	2.5357	2	0.025945	3984	160513_QHF_FH_JSI11Kac_3	64.757	4.0756			0.81727	0.88093	9.7849	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69468	0.82204	NaN	1	0	Median	0.96149	0.94404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12011000	5970700	6039900	0	0	0	3071500	1650600	1420900	8939000	4320100	4618900	0	0	0	1243	5222	1175	7422;7423	10081	10081			1	
AEEGIAAGGVMDVNTALQEVLK	1	Acetyl (Protein N-term)	2256.1308	0.13076276	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.634	8	4	1							3	4	3	3	102.68	102.58	2;3	7.6421E-302	93193	160511_QHF_FH_JSI12i_1	213.67	199.99			1.0691	1.0838	52.748	12	1	Median	1.3665	1.1034	3.3126	2	0	Median	0.93306	1.0823	92.138	4	1	Median	1.1001	1.0703	6.9405	3	0	Plateau	1.0606	1.1311	4.8133	3	0	Median	8690900000	4331400000	4359500000	1246600000	518100000	728470000	2452600000	1302800000	1149700000	1988700000	996760000	991930000	3003000000	1513700000	1489400000	1244	1258	1176	7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435;7436	10082;10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097	10086			16	
AEEHNIVFMPVIGK	1	Unmodified	1582.8177	0.81774888	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.033	69.741	3	0.00031318	60146	160511_QHF_FH_JSI12i_2	64.104	55.505			0.99831	1.0866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99831	1.0866	NaN	1	0	Median	25359000	12450000	12909000	0	0	0	0	0	0	0	0	0	25359000	12450000	12909000	1245	5229	1177	7437	10098	10098			1	
AEEIANEMIEAAK	1	Unmodified	1417.6759	0.67589525	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.924	56.189	2	3.1608E-15	51100	160511_QHF_FH_JSI12i_1	158.3	99.319			1.026	1.0644	15.458	3	0	Median	1.026	0.84394	NaN	1	0	Median	0.90747	1.0644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1205	1.1312	NaN	1	0	Median	384640000	201320000	183320000	111120000	53419000	57699000	159010000	93180000	65830000	0	0	0	114510000	54726000	59788000	1246	1664	1178	7438;7439;7440;7441	10099;10100;10101;10102	10100			4	
AEEILEK	1	Unmodified	830.43855	0.43854874	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	4	1				1				2	2	1	1	19.476	16.04	2	0.0039208	5790	160513_QHF_FH_JSI9Kac_3	98.997	25.958			1.7645	1.9067	62.53	6	4	Median	2.132	1.7593	54.59	2	1	Median	3.0132	3.6616	94.585	2	1	Median	1.992	1.938	NaN	1	1	Median	1.4459	1.5372	NaN	1	1	Median	10472000000	4935000000	5537500000	2438900000	745510000	1693400000	2995500000	1505000000	1490500000	2757600000	1510400000	1247100000	2280500000	1174000000	1106500000	1247	2038	1179	7442;7443;7444;7445;7446;7447	10103;10104;10105;10106;10107;10108	10106			6	
AEEILEKGLK	2	Acetyl (K)	1170.6496	0.64960415	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.7						3	3	1			3	2	2	61.69	51.509	2	1.3416E-06	28318	160513_QHF_FH_JSI12Kac_4	129.1	89.951			0.5333	0.58981	232.35	7	3	Median	NaN	NaN	NaN	0	0	Median	0.91482	1.0891	297.3	3	2	Median	0.070817	0.069678	253.31	2	1	Median	0.66328	0.73002	30.16	2	0	Median	78983000	47793000	31190000	0	0	0	31702000	15839000	15864000	16808000	13694000	3113700	30472000	18260000	12212000	1248	2038	1180	7448;7449;7450;7451;7452;7453;7454	10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119;10120	10116	2088		12	
AEELAAR	0	Unmodified	758.39227	0.39226725	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	8.9378	8.4156	2	0.044017	5936	160511_QHF_FH_JSI9i_1	45.394	8.3003			1.5018	1.4035	14.228	2	0	Median	1.5256	1.2692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4784	1.5521	NaN	1	0	Median	645400000	250410000	394990000	328420000	127140000	201280000	0	0	0	0	0	0	316980000	123270000	193710000	1249	2215	1181	7455;7456	10121	10121			1	
AEELFLWVPR	0	Unmodified	1258.671	0.67100829	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	93.292	92.69	2	0.04555	80130	160511_QHF_FH_JSI12i_2	51.113	39.623			0.94633	0.95988	28.669	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2065	1.1756	NaN	1	0	Median	0.74225	0.78375	NaN	1	0	Median	17310000	8380000	8930400	0	0	0	0	0	0	9902800	5400100	4502700	7407600	2979900	4427700	1250	3312	1182	7457;7458	10122	10122			0	
AEELFLWVPRK	1	Unmodified	1386.766	0.76597131	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	75.62	75.478	3	0.018732	65703	160511_QHF_FH_JSI12i_3	45.879	45.879			0.79088	0.78273	18.547	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72627	0.68652	NaN	1	0	Median	0.86122	0.89242	NaN	1	0	Median	61835000	34580000	27255000	0	0	0	0	0	0	22801000	12394000	10407000	39034000	22186000	16848000	1251	3312	1183	7459;7460	10123	10123			0	
AEELHYPLGER	0	Unmodified	1312.6412	0.64116473	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	36.42	35.475	2;3	2.7942E-07	30160	160511_QHF_FH_JSI11i_2	120.68	90.516			1.0003	0.98736	14.843	9	3	Median	1.1239	0.97823	1.3141	2	0	Median	0.72258	0.88687	11.141	3	3	Median	1.1362	1.1406	17.663	2	0	Median	0.95703	1.0656	5.6753	2	0	Median	906370000	468880000	437490000	153260000	70050000	83210000	278900000	153150000	125750000	303210000	146860000	156350000	171000000	98822000	72175000	1252	2524	1184	7461;7462;7463;7464;7465;7466;7467;7468;7469	10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136	10131			13	
AEELIQQEHADQAEIR	0	Unmodified	1878.9072	0.90716883	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	36.539	35.65	3	6.0243E-05	30273	160511_QHF_FH_JSI12i_2	73.498	61.855			1.1652	1.2297	4.0881	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2649	1.2658	NaN	1	0	Median	1.0734	1.1947	NaN	1	0	Median	81011000	37942000	43070000	0	0	0	0	0	0	53284000	23791000	29493000	27727000	14150000	13577000	1253	941	1185	7470;7471	10137;10138;10139	10138			3	
AEELLAEEK	1	Unmodified	1030.5183	0.51825563	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	30.381	27.054	2	1.1912E-05	23935	160511_QHF_FH_JSI12i_1	126.07	92.271			1.2841	1.1921	51.298	6	5	Median	1.4122	1.1488	NaN	1	1	Median	1.0843	1.2703	39.187	2	1	Median	1.2999	1.2719	107.42	2	2	Median	1.1676	1.2369	NaN	1	1	Median	1382000000	865530000	516460000	300620000	136540000	164080000	379990000	245020000	134970000	409290000	287990000	121300000	292100000	195990000	96110000	1254	133	1186	7472;7473;7474;7475;7476;7477	10140;10141;10142;10143;10144;10145	10141			6	
AEELLLK	1	Unmodified	814.48002	0.48001963	1855	P55212	CASP6	Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	38.549	37.944	2	0.011032	34074	160511_QHF_FH_JSI11i_1	63.306	0			0.6125	0.60581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6125	0.60581	NaN	1	0	Median	15114000	9517700	5596700	0	0	0	0	0	0	0	0	0	15114000	9517700	5596700	1255	1855	1187	7478;7479	10146;10147	10146			2	
AEELQPGFSK	1	Unmodified	1104.5451	0.54513908	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	31.934	31.016	2	7.744E-05	27125	160511_QHF_FH_JSI9i_1	87.806	54.544			1.1538	1.0792	5.1747	2	0	Median	1.3583	1.1194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98019	1.0404	NaN	1	0	Median	376140000	158430000	217710000	169050000	61865000	107180000	0	0	0	0	0	0	207090000	96566000	110530000	1256	4262	1188	7480;7481	10148	10148			1	
AEELVNTAPLTGVPQHVPVR	0	Unmodified	2126.1484	0.14840216	2786	Q24JP5	TMEM132A	Transmembrane protein 132A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	67.181	66.244	3	4.7325E-05	57817	160511_QHF_FH_JSI11i_2	57.41	48.766			1.0468	1.1052	36.172	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85752	0.85581	NaN	1	1	Median	1.2779	1.4274	NaN	1	1	Median	84161000	39355000	44805000	0	0	0	0	0	0	53770000	29312000	24458000	30391000	10043000	20348000	1257	2786	1189	7482;7483	10149;10150	10150			2	
AEEMDTEDRPEASGVDTEPR	0	Unmodified	2232.9441	0.9440842	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	29.505	28.917	3	1.0576E-05	25614	160511_QHF_FH_JSI10i_1	76.061	70.851			0.95825	1.0678	27.48	5	3	Median	1.2681	1.0769	NaN	1	0	Median	0.95825	1.1225	NaN	1	0	Median	0.61842	0.58964	NaN	1	1	Median	0.91188	0.92554	20.216	2	2	Median	167920000	89732000	78191000	29215000	11222000	17992000	37972000	17846000	20126000	38990000	24913000	14078000	61746000	35751000	25995000	1258	3517	1190	7484;7485;7486;7487;7488;7489	10151;10152;10153;10154;10155;10156	10155			6	
AEENALQQK	1	Unmodified	1029.5091	0.50908792	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	9.7485	9.504	2	0.00030808	7433	160511_QHF_FH_JSI12i_1	93.162	69.008			0.42648	0.44799	10.977	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.42648	0.48797	NaN	1	1	Median	0.42864	0.41129	NaN	1	1	Median	0.38173	0.39763	NaN	1	1	Median	313160000	211530000	101640000	0	0	0	117500000	78755000	38748000	105650000	68069000	37581000	90012000	64702000	25310000	1259	1085	1191	7490;7491;7492	10157;10158;10159	10158			3	
AEENTDQASPQEDYAGFER	0	Unmodified	2155.893	0.89303491	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			40.604	40.212	2	0.00019604	36072	160511_QHF_FH_JSI10i_1	69.602	68.466			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1260	4997	1192	7493	10160	10160			1	
AEEQGRER	0	Acetyl (Protein N-term)	1015.4683	0.46828574	4730	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	yes	yes	0	1	0	1			By MS/MS	By MS/MS	1	0	2											1	1	5.0553	4.7137	2	0.00054556	2684	160511_QHF_FH_JSI12i_1	94.302	76.917			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1261	4730	1193	7494;7495	10161;10162	10162			2	
AEEQPQVELFVK	1	Acetyl (Protein N-term)	1457.7402	0.74021007	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	2.84	7		3	1						3	2	3	3	79.682	79.159	1;2	9.5407E-08	72073	160511_QHF_FH_JSI12i_1	111.61	103.07			1.0754	1.0293	38.9	10	3	Median	1.174	0.97197	54.557	3	1	Plateau	0.89469	1.0461	NaN	1	0	Median	1.1511	1.1064	8.9817	3	1	Median	1.3099	1.3934	41.8	3	1	Plateau	3225900000	1616400000	1609400000	575120000	261400000	313720000	1009900000	565640000	444250000	667590000	307690000	359910000	973260000	481710000	491540000	1262	119	1194	7496;7497;7498;7499;7500;7501;7502;7503;7504;7505;7506	10163;10164;10165;10166;10167;10168;10169;10170;10171;10172;10173;10174;10175;10176;10177;10178	10168			15	
AEERAEVSELK	1	Unmodified	1259.6357	0.635745	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	17.031	16.489	2;3	0.0020974	13898	160511_QHF_FH_JSI10i_2	53.967	35.83			0.93349	1.0064	20.808	5	0	Median	1.0141	0.86902	NaN	1	0	Median	0.85401	1.0404	NaN	1	0	Median	1.2292	1.2745	NaN	1	0	Median	0.83733	0.85749	22.651	2	0	Median	303810000	155320000	148480000	59599000	33337000	26262000	62462000	30076000	32386000	92024000	48008000	44016000	89720000	43900000	45821000	1263	2069	1195	7507;7508;7509;7510;7511;7512	10179;10180;10181	10181			3	
AEETQGNVDEASLK	1	Unmodified	1489.6896	0.68963106	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.638	22.361	2	2.5397E-05	19491	160511_QHF_FH_JSI10i_1	163.99	116.17			1.1995	1.3931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1995	1.3931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39346000	20502000	18844000	0	0	0	39346000	20502000	18844000	0	0	0	0	0	0	1264	3140	1196	7513;7514	10182;10183	10183			2	
AEETSSPVIGELWSPDQTAEASHVSR	0	Unmodified	2782.3046	0.30458104	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	72.461	71.725	3	2.031E-13	65196	160511_QHF_FH_JSI11i_1	98.299	90.766			1.0137	1.0187	19.393	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4508	1.3879	NaN	1	1	Median	0.94794	0.99448	3.3967	2	0	Median	65512000	27479000	38033000	0	0	0	0	0	0	21176000	7221000	13955000	44336000	20258000	24079000	1265	3376	1197	7515;7516;7517	10184;10185;10186;10187;10188	10184			5	
AEEVATFFAK	1	Unmodified	1111.555	0.55497548	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	1	3	60.709	56.711	2	1.562E-09	51170	160511_QHF_FH_JSI11i_1	133.57	68.536			0.96484	0.94266	23.266	6	0	Median	0.9668	0.79289	NaN	1	0	Median	0.78405	0.91665	4.9572	2	0	Median	0.96288	0.936	NaN	1	0	Median	1.1997	1.251	30.758	2	0	Median	514780000	266320000	248460000	80767000	32821000	47946000	168470000	87915000	80557000	145070000	87107000	57962000	120470000	58481000	61993000	1266	998	1198	7518;7519;7520;7521;7522;7523;7524	10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200	10190			12	
AEEVVVVAK	1	Acetyl (Protein N-term)	984.54916	0.54916182	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	8	4.97	1			1	1					1	1		1	60.176	54.875	2	0.0025729	48672	160511_QHF_FH_JSI9i_1	60.59	35.667			1.7621	1.4526	NaN	1	1	Median	1.7621	1.4526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25683000	8443700	17239000	24019000	8443700	15575000	0	0	0	0	0	0	1664200	0	1664200	1267	1095	1199	7525;7526;7527	10201;10202;10203	10202			3	
AEEWGVQYVETSAK	1	Unmodified	1595.7468	0.74675201	994	P11234	RALB	Ras-related protein Ral-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			57.776	57.382	2	4.8288E-17	51072	160511_QHF_FH_JSI9i_1	131.13	107.53			0.72895	0.86915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72895	0.86915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76921000	48586000	28335000	0	0	0	76921000	48586000	28335000	0	0	0	0	0	0	1268	994	1200	7528;7529	10204;10205;10206	10206			3	
AEEYEFLTPVEEAPK	1	Unmodified	1750.8301	0.83014729	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.77	8		3			3				4	4	2	4	72.984	71	2;3	2.9179E-41	64396	160511_QHF_FH_JSI10i_1	248.41	214.54			1.0101	1.0032	19.5	12	1	Median	1.179	0.96744	31.259	3	1	Plateau	0.82143	0.97034	26.711	3	0	Plateau	1.04	1.0169	2.5426	2	0	Median	0.93546	1.0013	5.6517	4	0	Median	9168500000	4637000000	4531500000	2067000000	907450000	1159500000	2072200000	1086000000	986290000	2618600000	1267200000	1351400000	2410700000	1376400000	1034200000	1269	1773	1201	7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543	10207;10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241;10242;10243	10227			37	
AEEYTEETEEREESTTGFDK	1	Unmodified	2378.9874	0.98738881	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.209	35.601	3	6.0775E-07	32051	160511_QHF_FH_JSI11i_1	96.391	92.638			0.91806	0.91321	6.7287	4	0	Median	1.1243	0.92974	NaN	1	0	Median	0.72258	0.83619	NaN	1	0	Median	0.91209	0.89697	NaN	1	0	Median	0.92406	0.98176	NaN	1	0	Median	350860000	193250000	157610000	46150000	25997000	20153000	98428000	55963000	42466000	100890000	56284000	44604000	105390000	55006000	50388000	1270	5542	1202	7544;7545;7546;7547	10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254	10247			11	
AEFAAPSTDAPDK	1	Unmodified	1318.6041	0.60411052	3977	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	3	1	3	36.417	32.202	2	2.0604E-06	18385	160513_QHF_FH_JSI11Kac_3	104.52	78.009			1.2786	1.2464	27.506	7	3	Median	1.3632	1.1275	NaN	1	0	Median	0.99498	1.1591	17.384	2	1	Median	1.2786	1.2464	NaN	1	0	Median	1.3304	1.385	38.021	3	2	Median	712680000	347880000	364800000	196520000	97185000	99339000	201310000	111330000	89983000	2918400	1146700	1771700	311930000	138220000	173710000	1271	3977	1203	7548;7549;7550;7551;7552;7553;7554;7555	10255;10256;10257;10258;10259;10260;10261;10262;10263;10264	10258			10	
AEFFADVVPAVR	0	Unmodified	1319.6874	0.68738664	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.824	80.039	2	4.4605E-06	70782	160511_QHF_FH_JSI9i_2	123.63	95.883			0.82024	0.89515	19.685	4	0	Median	1.4968	1.2752	NaN	1	0	Median	0.74742	0.91401	NaN	1	0	Median	0.8189	0.81949	NaN	1	0	Median	0.82158	0.87667	NaN	1	0	Median	168450000	92703000	75743000	34384000	14276000	20108000	32147000	18286000	13861000	61110000	35500000	25610000	40805000	24642000	16163000	1272	5317	1204	7556;7557;7558;7559	10265;10266;10267;10268;10269	10267			5	
AEFFADVVPAVRK	1	Unmodified	1447.7823	0.78234966	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	3	2	2	67.941	67.21	2;3	1.6097E-07	59793	160511_QHF_FH_JSI11i_3	107.65	100.44			0.82825	0.83677	25.034	7	2	Median	0.77875	0.64609	14.087	2	1	Median	0.81384	0.97184	35.936	2	1	Median	0.94667	0.93417	15.573	2	0	Median	0.81247	0.83904	NaN	1	0	Median	757640000	403050000	354590000	125050000	70246000	54804000	246960000	115750000	131210000	264720000	139310000	125420000	120900000	77741000	43161000	1273	5317	1205	7560;7561;7562;7563;7564;7565;7566;7567;7568	10270;10271;10272;10273;10274;10275;10276;10277;10278;10279;10280;10281;10282;10283;10284	10271			15	
AEFFQHLIEDR	0	Unmodified	1403.6834	0.68336389	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		65.539	65.043	3	1.1698E-06	57738	160511_QHF_FH_JSI11i_3	101.6	91.242			0.82481	0.79037	22	3	3	Median	NaN	NaN	NaN	0	0	Median	0.53229	0.62656	NaN	1	1	Median	0.92394	0.87678	14.672	2	2	Median	NaN	NaN	NaN	0	0	Median	130030000	73200000	56831000	0	0	0	16390000	10625000	5764100	113640000	62574000	51067000	0	0	0	1274	701	1206	7569;7570;7571	10285;10286;10287	10286			3	
AEFGDFDIK	1	Unmodified	1040.4815	0.48147619	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.308	60.669	2	4.2131E-06	54726	160511_QHF_FH_JSI10i_1	120.12	86.322			1.0188	1.0195	7.6558	4	0	Median	1.0894	0.89406	NaN	1	0	Median	0.90825	1.0636	NaN	1	0	Median	1.034	1.0032	NaN	1	0	Median	1.0038	1.0362	NaN	1	0	Median	553460000	267020000	286440000	107420000	46952000	60468000	147180000	74796000	72386000	164030000	77469000	86562000	134820000	67805000	67020000	1275	3426	1207	7572;7573;7574;7575	10288;10289;10290;10291;10292;10293	10291			6	
AEFGPPGPGAGSR	0	Unmodified	1198.5731	0.57308516	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.07	4	4	2				2	3		3	3	5	4	31.089	28.188	2	9.4709E-11	23780	160511_QHF_FH_JSI12i_2	152.54	131.91			0.89159	0.95341	16.031	12	1	Median	1.1255	0.93684	19.64	3	1	Median	0.8091	0.97487	3.1449	3	0	Plateau	0.9263	0.94798	9.6964	3	0	Median	1.1724	1.2371	24.736	3	0	Plateau	2154700000	1096000000	1058700000	431270000	209200000	222070000	533930000	315050000	218880000	532060000	253310000	278750000	657400000	318440000	338960000	1276	4715	1208	7576;7577;7578;7579;7580;7581;7582;7583;7584;7585;7586;7587;7588;7589;7590	10294;10295;10296;10297;10298;10299;10300;10301;10302;10303;10304;10305;10306;10307;10308;10309;10310;10311;10312;10313;10314	10297			21	
AEFIVGGK	1	Unmodified	819.44905	0.44905385	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							3	1	2	1	33.409	32.717	2	0.0008738	27643	160511_QHF_FH_JSI11i_2	89.55	44.939			0.72505	0.75624	41.701	5	0	Median	0.57652	0.48321	63.343	2	0	Median	0.72505	0.84964	NaN	1	0	Median	0.81775	0.81114	NaN	1	0	Median	0.62504	0.64775	NaN	1	0	Median	454300000	252440000	201860000	114370000	67461000	46905000	135510000	81114000	54394000	129920000	67349000	62574000	74502000	36518000	37984000	1277	1633	1209	7591;7592;7593;7594;7595;7596;7597	10315;10316;10317;10318;10319;10320;10321;10322;10323	10323			9	
AEFLDDQETR	0	Acetyl (Protein N-term)	1264.5572	0.55716033	172	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS		4.67	5.19	2				1					1		2		62.129	61.376	2	0.0020586	54549	160511_QHF_FH_JSI9i_1	71.451	68.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1278	172	1210	7598;7599;7600	10324;10325;10326	10326			3	
AEFPSYLLGGR	0	Unmodified	1208.619	0.61897272	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.461	71.509	2	0.0059291	62559	160511_QHF_FH_JSI11i_2	52.79	23.703			1.4622	1.538	7.7174	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4794	1.4563	NaN	1	0	Median	1.4452	1.6242	NaN	1	0	Median	70710000	30195000	40515000	0	0	0	0	0	0	41352000	14816000	26536000	29358000	15380000	13979000	1279	3063	1211	7601;7602	10327;10328;10329	10329			2	
AEFQEEAK	1	Unmodified	950.43453	0.434526	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	14.588	11.337	2	0.0021479	9894	160511_QHF_FH_JSI12i_1	82.279	17.858			1.026	1.0877	12.435	5	0	Median	1.3472	1.0877	NaN	1	0	Median	0.71733	0.84934	NaN	1	0	Median	1.0815	1.0624	12.954	2	0	Median	1.026	1.0888	NaN	1	0	Median	802110000	365400000	436710000	265220000	120570000	144640000	4073700	2038800	2034900	242330000	90724000	151610000	290490000	152070000	138420000	1280	1085	1212	7603;7604;7605;7606;7607	10330;10331;10332;10333;10334;10335	10330			6	
AEFTSPPSLFK	1	Unmodified	1222.6234	0.6233894	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.15	2	4					1	2		2	2	2	3	69.771	65.733	2	1.9688E-05	57869	160511_QHF_FH_JSI11i_2	103.26	85.391			0.96666	0.94155	14.02	9	3	Median	1.1268	0.93478	13.079	2	1	Median	0.76927	0.91137	2.9365	2	1	Median	0.86286	0.84217	19.055	2	0	Median	0.98484	1.0549	12.605	3	1	Median	558750000	300700000	258050000	65761000	33188000	32573000	194510000	112660000	81854000	85480000	54845000	30636000	212990000	100000000	112990000	1281	3143	1213	7608;7609;7610;7611;7612;7613;7614;7615;7616	10336;10337;10338;10339;10340;10341;10342;10343;10344;10345	10342			10	
AEFVEVTK	1	Unmodified	921.48075	0.48074791	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.22	5					2	2			1	4	2	2	36.86	31.888	2	1.3352E-05	28787	160511_QHF_FH_JSI12i_1	117.04	69.969		+	0.85409	0.90381	46.156	8	2	Median	1.1251	0.90025	NaN	1	0	Median	1.0797	1.2746	45.858	4	2	Median	0.70175	0.67538	3.3441	2	0	Median	0.67823	0.73908	NaN	1	0	Median	1225700000	592460000	633260000	245120000	99389000	145730000	645300000	287600000	357710000	331250000	203230000	128020000	4042800	2241200	1801500	1282	50	1214	7617;7618;7619;7620;7621;7622;7623;7624;7625	10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357	10348			12	
AEFWLDLQPQAK	1	Unmodified	1444.7351	0.73506511	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.161	82.557	2	0.00047419	72621	160511_QHF_FH_JSI11i_2	72.848	55.617			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1283	2232	1215	7626	10358	10358			1	
AEGAAFAEARPDLR	0	Unmodified	1472.7372	0.73719038	5806				yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3.92	4.98	8	2				3				1	5	5	2	7.8859	5.9881	2;3	0.0001637	5113	160511_QHF_FH_JSI12i_1	58.32	29.417	+		0.95954	1.0863	19.188	13	0	Median	0.71539	0.64684	NaN	1	0	Median	0.95954	1.1113	14.802	5	0	Median	1.255	1.2093	15.319	5	0	Linear	1.0578	1.1195	13.671	2	0	Median	5999900000	3310600000	2689300000	47283000	25246000	22037000	2622300000	1496600000	1125700000	2201300000	1253100000	948160000	1129000000	535650000	593330000	1284	5806	1216	7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639	10359;10360;10361;10362;10363;10364;10365	10361			7	
AEGAATEEEGTPK	1	Unmodified	1288.5783	0.5782897	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	4.97	4	5	4	4	3	3				4	6	7	6	11.168	7.2568	2	2.176E-128	4077	160513_QHF_FH_JSI11Kac_2	279.3	211.08			1.0277	1.0402	57.582	20	2	Median	1.1618	0.97294	3.9325	3	1	Plateau	1.1238	1.2963	17.934	6	1	Median	1.0506	1.037	105.18	6	0	Median	0.91789	1.0168	4.536	5	0	Median	12640000000	5755000000	6885000000	2641600000	1137200000	1504400000	3184800000	1413000000	1771800000	3337600000	1382800000	1954800000	3475900000	1822000000	1653900000	1285	2101	1217	7640;7641;7642;7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662	10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401	10370			36	
AEGAQNQGKK	2	Acetyl (K)	1071.5309	0.530886	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	no	1	0	0	1				By MS/MS	13	0						1							1	5.2362	-1.9157	2	0.028967	1693	160513_QHF_FH_JSI12Kac_3	60.59	41.496			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1287300	1287300	0	0	0	0	0	0	0	0	0	0	1287300	1287300	0	1286	5213	1218	7663	10402	10402			1	
AEGDISNVANGFK	1	Unmodified	1320.631	0.63099397	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.069	47.387	2	1.9202E-30	42714	160511_QHF_FH_JSI11i_1	184.36	146.07			0.95816	1.0043	4.3337	4	0	Linear	1.1315	0.94091	NaN	1	0	Median	0.77987	0.89676	NaN	1	0	Median	0.98394	0.95548	NaN	1	0	Median	0.93305	0.99598	NaN	1	0	Median	1422400000	724560000	697860000	327900000	166690000	161210000	318080000	175040000	143040000	358840000	163830000	195010000	417590000	219000000	198600000	1287	5227	1219	7664;7665;7666;7667	10403;10404;10405;10406;10407;10408;10409;10410	10403			8	
AEGDSAGTAGTPGGTPAGDK	1	Unmodified	1715.7598	0.75983589	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.616	14.162	2	7.0524E-100	11690	160511_QHF_FH_JSI10i_1	263.59	248.32			1.105	1.0886	8.0504	4	0	Median	1.2094	0.98137	NaN	1	0	Median	0.98742	1.1927	NaN	1	0	Median	1.1585	1.1039	NaN	1	0	Median	1.054	1.0735	NaN	1	0	Median	228250000	97892000	130360000	59012000	22564000	36448000	66894000	26818000	40076000	46883000	21856000	25027000	55459000	26654000	28805000	1288	3908	1220	7668;7669;7670;7671	10411;10412;10413;10414;10415;10416;10417;10418	10416			8	
AEGDVAALNRR	0	Unmodified	1170.6105	0.6105333	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.24		8	6					4		3	5	5	5	17.13	14.67	2;3	9.3302E-31	12552	160511_QHF_FH_JSI9i_2	196.88	142.91			0.99649	1.0107	8.2596	18	0	Median	1.2821	1.0619	6.6821	3	0	Median	0.82283	0.99151	8.6217	5	0	Median	1.1002	1.0991	10.402	5	0	Median	0.98277	1.0128	7.7778	5	0	Median	2801200000	1398100000	1403100000	550580000	240850000	309730000	1093400000	592340000	501100000	802780000	392020000	410760000	354440000	172910000	181530000	1289	2069	1221	7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689	10419;10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438;10439;10440;10441;10442;10443;10444;10445	10429			26	
AEGERQPPPDSSEEAPPATQNFIIPK	1	Acetyl (Protein N-term)	2846.3723	0.37226668	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	67.918	67.304	3	0.0015658	61293	160511_QHF_FH_JSI12i_1	35.875	29.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22078000	0	22078000	0	0	0	0	0	0	0	0	0	22078000	0	22078000	1290	2645	1222	7690	10446	10446			1	
AEGFVDALHR	0	Unmodified	1113.5567	0.55670682	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	1	1	3	3	39.768	36.864	3	5.4816E-08	32221	160511_QHF_FH_JSI11i_3	104.42	96.536			1.1743	1.1283	17.153	8	0	Median	1.3401	1.1317	NaN	1	0	Median	0.82725	1.0124	NaN	1	0	Median	1.319	1.2101	16.031	3	0	Median	1.0539	1.1125	12.001	3	0	Plateau	813950000	388630000	425330000	71969000	32415000	39554000	128850000	74431000	54419000	305640000	134950000	170700000	307490000	146830000	160660000	1291	4118	1223	7691;7692;7693;7694;7695;7696;7697;7698	10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458	10447			11	
AEGGAADLDTQR	0	Acetyl (Protein N-term)	1244.5633	0.56330834	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		35.965	27.257	2	6.9082E-05	11534	160513_QHF_FH_JSI11Kac_1	94.616	86.396			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1292	5626	1224	7699	10459	10459			1	
AEGGGGGGRPGAPAAGDGK	1	Unmodified	1537.7233	0.72333123	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	2.82	7	8	3				1			3	6	5	5	7.6518	6.7757	2;3	3.1847E-09	5227	160511_QHF_FH_JSI10i_2	126.95	93.082			1.6056	1.6578	32.008	17	4	Linear	1.0616	0.89633	9.5885	3	0	Median	0.84019	0.97369	21.675	5	2	Median	1.2775	1.2451	36.286	5	0	Median	1.8052	1.9554	48.259	4	2	Linear	2999700000	1271900000	1727800000	672820000	274030000	398790000	1109600000	529120000	580450000	870150000	326140000	544000000	347140000	142600000	204540000	1293	2161	1225	7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718	10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484	10482			25	
AEGGQSAAAHSAHTVK	1	Unmodified	1520.7332	0.73316763	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	5.3675	5.4153	3;4	6.1153E-06	3005	160511_QHF_FH_JSI12i_3	103.13	94.311			1.1251	1.0895	6.417	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2312	1.1511	5.2365	2	0	Median	1.0285	1.0483	2.9169	2	0	Median	582270000	294300000	287980000	0	0	0	0	0	0	278110000	145440000	132670000	304160000	148860000	155310000	1294	4140	1226	7719;7720;7721;7722;7723	10485;10486;10487;10488	10488			4	
AEGGYFGQIR	0	Unmodified	1096.5302	0.53015772	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	38.909	37.984	2	1.3769E-05	32561	160511_QHF_FH_JSI11i_2	101.64	64.085			1.243	1.3152	10.885	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.2321	1.5346	NaN	1	1	Median	1.243	1.2437	NaN	1	0	Median	1.1429	1.3152	NaN	1	1	Median	209980000	88678000	121300000	0	0	0	88118000	32958000	55160000	67632000	29018000	38615000	54231000	26702000	27529000	1295	3675	1227	7724;7725;7726	10489;10490;10491	10490			3	
AEGILLLVK	1	Unmodified	954.61137	0.61136815	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								4			2	1	1	80.475	70.01	2	0.0012051	37048	160513_QHF_FH_JSI11Kac_5	86.953	60.351			1.0145	1.0996	4.9346	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0145	1.0996	NaN	1	0	Median	1.1797	1.1601	NaN	1	0	Median	0.98671	1.0512	NaN	1	0	Median	7470500	3970000	3500500	0	0	0	1019600	560350	459210	4311000	2233100	2077900	2139900	1176600	963350	1296	5369	1228	7727;7728;7729;7730	10492;10493	10492			2	
AEGIREPK	1	Unmodified	898.48723	0.48723027	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		8.0048	8.0048	2;3	0.020324	5714	160511_QHF_FH_JSI11i_3	36.557	4.6224			0.93618	0.87068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93618	0.87068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102870000	51095000	51774000	0	0	0	0	0	0	102870000	51095000	51774000	0	0	0	1297	1580	1229	7731;7732	10494;10495	10495			2	
AEGLGDGYR	0	Unmodified	936.43011	0.43010932	4510	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	23.594	15.996	2	0.047798	10044	160513_QHF_FH_JSI12Kac_4	39.022	32.52			1.207	1.2837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.207	1.2837	NaN	1	0	Median	3085600	1613600	1472100	0	0	0	0	0	0	0	0	0	3085600	1613600	1472100	1298	4510	1230	7733	10496	10496			1	
AEGLQVGQDAR	0	Unmodified	1142.568	0.56799978	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	20.274	19.966	2	9.784E-05	17472	160511_QHF_FH_JSI12i_1	87.568	57.401			0.95823	0.97037	0.20327	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99973	0.97176	NaN	1	0	Median	0.91845	0.96897	NaN	1	0	Median	238730000	91480000	147250000	0	0	0	0	0	0	144890000	37914000	106980000	93837000	53566000	40271000	1299	3801	1231	7734;7735	10497;10498;10499;10500	10500			4	
AEGNDHIER	0	Unmodified	1039.4683	0.46828574	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	5.2196	4.8854	3	0.0024312	2733	160511_QHF_FH_JSI12i_2	50.108	41.245			0.89353	0.99069	14.277	5	0	Median	1.2204	1.0376	NaN	1	0	Median	0.76887	0.95934	NaN	1	0	Median	0.8594	0.85679	22.682	2	0	Median	0.89353	0.99069	NaN	1	0	Median	885130000	451850000	433280000	167790000	77881000	89907000	171050000	93786000	77263000	341260000	177580000	163680000	205030000	102610000	102430000	1300	2638;2895	1232	7736;7737;7738;7739;7740	10501;10502;10503;10504	10501			4	
AEGPDVAVDLPK	1	Unmodified	1209.6241	0.62411768	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	57.407	52.361	2	3.5923E-16	46611	160511_QHF_FH_JSI10i_1	164.64	129.35			1.0331	1.0537	10.64	8	0	Median	1.1665	0.95003	NaN	1	0	Median	0.73866	0.87696	4.101	2	0	Median	1.0796	1.0623	3.8085	2	0	Median	1.0155	1.1259	2.7666	3	0	Median	910970000	427140000	483830000	281140000	123050000	158100000	223230000	114300000	108940000	186530000	86975000	99551000	220070000	102820000	117240000	1301	2286	1233	7741;7742;7743;7744;7745;7746;7747;7748	10505;10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518;10519;10520;10521	10513			17	
AEGPEVDVNLPK	1	Unmodified	1266.6456	0.6455814	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.65	8				2	3				2	4	4	3	54.84	50.802	2;3	5.6494E-53	45577	160511_QHF_FH_JSI10i_1	212.72	173.42			0.99443	0.96222	9.2058	13	0	Median	1.0806	0.90132	1.8948	2	0	Median	0.76203	0.90665	3.4549	4	0	Linear	1.0156	0.9837	5.4506	4	0	Median	1.0368	1.1392	12.13	3	0	Median	11328000000	5447200000	5880900000	2205200000	1018300000	1186800000	2782800000	1501000000	1281900000	3303900000	1601700000	1702200000	3036200000	1326100000	1710100000	1302	2286	1234	7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761	10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532;10533;10534;10535;10536;10537;10538;10539;10540;10541;10542;10543;10544;10545;10546	10537			25	
AEGPGLSK	1	Unmodified	757.39702	0.39701828	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	10.18	9.9359	2	0.011665	7562	160511_QHF_FH_JSI11i_1	53.968	1.5651			1.6157	2.2367	14.578	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.5184	1.7951	NaN	1	0	Median	2.3201	2.2488	NaN	1	0	Median	1.6157	1.7117	NaN	1	0	Median	2511500000	1097200000	1414300000	0	0	0	826430000	385670000	440760000	878510000	384250000	494260000	806540000	327290000	479250000	1303	512	1235	7762;7763;7764	10547;10548	10547			2	
AEGPGLSR	0	Unmodified	785.40317	0.40316629	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.33	5.46	4	3					1	1		3	2	1	3	11.098	8.8133	2	0.0039585	7431	160511_QHF_FH_JSI12i_2	77.058	22.532			1.1482	1.0636	11.433	9	1	Median	1.1709	0.9837	6.685	3	0	Plateau	0.93442	1.1305	15.004	2	0	Median	1.2712	1.2379	NaN	1	0	Median	1.0338	1.1336	12.372	3	1	Median	4181600000	2123000000	2058600000	1137700000	615730000	521930000	1172100000	614560000	557550000	732330000	346830000	385500000	1139500000	545840000	593650000	1304	1192	1236	7765;7766;7767;7768;7769;7770;7771;7772;7773	10549;10550;10551;10552;10553;10554	10550			6	
AEGPGRGDEPSPS	0	Unmodified	1254.5477	0.54765827	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	3	1	11.678	8.9583	2	6.8631E-06	7662	160511_QHF_FH_JSI11i_1	90.104	59.786			0.84418	0.82836	16.431	6	1	Median	0.85611	0.68366	NaN	1	0	Median	0.7895	0.91125	12.77	2	0	Median	0.94551	0.92689	16.611	2	1	Median	0.69264	0.73971	NaN	1	0	Median	991770000	565960000	425810000	246890000	148450000	98442000	255920000	141860000	114060000	203490000	111160000	92329000	285470000	164490000	120980000	1305	5035	1237	7774;7775;7776;7777;7778;7779;7780	10555;10556;10557;10558;10559;10560;10561;10562	10556			8	
AEGPVAVVVNGHTEGPAPAR	0	Unmodified	1926.9912	0.99117323	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	43.435	43.319	3	7.4825E-26	38091	160511_QHF_FH_JSI11i_3	149.47	149.29			0.98219	0.95624	3.5914	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9999	0.93226	NaN	1	0	Median	0.96479	0.98083	NaN	1	0	Median	131650000	66625000	65028000	0	0	0	0	0	0	94934000	48803000	46131000	36720000	17822000	18897000	1306	3325	1238	7781;7782	10563;10564;10565;10566	10563			4	
AEGSAVSDPQHAAR	0	Acetyl (Protein N-term)	1436.6644	0.66441937	4670	Q9H2C0	GAN	Gigaxonin	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.631	18.013	2	0.00016528	15389	160511_QHF_FH_JSI10i_1	91.313	83.833			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1307	4670	1239	7783;7784;7785	10567;10568;10569	10568			3	
AEGSDVANAVLDGADCIMLSGETAK	1	Unmodified	2493.1363	0.13631842	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	100.81	100.7	2;3	2.2821E-302	91283	160511_QHF_FH_JSI12i_1	473.44	456.32			0.93437	1.0655	23.745	7	0	Median	1.0327	0.84806	15.23	2	0	Median	0.89689	1.0717	0.81372	2	0	Median	0.85857	0.82848	NaN	1	0	Median	1.2904	1.3722	15.707	2	0	Median	4963300000	2390100000	2573200000	711590000	328270000	383320000	1752100000	989550000	762580000	304510000	160400000	144110000	2195100000	911910000	1283200000	1308	1055	1240	7786;7787;7788;7789;7790;7791;7792	10570;10571;10572;10573;10574;10575;10576;10577;10578;10579;10580;10581;10582;10583;10584	10575			15	
AEGSEAAELAEIYAK	1	Unmodified	1550.7464	0.74641766	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	64.502	63.932	2	6.5662E-30	58184	160511_QHF_FH_JSI12i_1	191.26	162.3			1.0178	1.0833	10.246	5	3	Median	1.3151	1.0833	NaN	1	1	Median	0.91061	1.058	13.89	2	2	Median	1.2804	1.2604	NaN	1	0	Median	1.0178	1.0669	NaN	1	0	Median	415600000	197780000	217820000	62596000	26900000	35696000	139660000	63838000	75817000	103680000	46548000	57130000	109670000	60489000	49179000	1309	5014	1241	7793;7794;7795;7796;7797	10585;10586;10587;10588;10589;10590;10591;10592	10588			8	
AEGSEIR	0	Unmodified	760.37153	0.37153181	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	0.668					1	9		1		4	1	4	2	8.5031	-1.8374	2	1.6883E-06	2021	160513_QHF_FH_JSI12Kac_3	132.96	45.378			1.1337	0.90509	35.052	11	0	Median	1.2241	0.78481	34.907	4	0	Median	1.0197	1.2193	NaN	1	0	Median	1.005	0.96195	23.832	4	0	Median	1.2249	1.3419	11.009	2	0	Median	176240000	83369000	92869000	21963000	9876100	12087000	29343000	14728000	14615000	78780000	37559000	41220000	46153000	21206000	24947000	1310	867	1242	7798;7799;7800;7801;7802;7803;7804;7805;7806;7807;7808	10593;10594;10595;10596;10597;10598;10599;10600	10598			8	
AEGSRPGGAAPVPEEGGR	0	Unmodified	1692.818	0.81795989	952	P0DI83	RAB34	Ras-related protein Rab-34, isoform NARR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			16.782	16.02	3	0.00033866	13363	160511_QHF_FH_JSI9i_2	52.298	41.705			0.76245	0.77224	17.114	2	0	Median	0.79824	0.68422	NaN	1	0	Median	0.72827	0.87158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56150000	31265000	24885000	29955000	18503000	11452000	26195000	12762000	13433000	0	0	0	0	0	0	1311	952	1243	7809;7810	10601;10602	10601			1	
AEGSSTASSGSQLAEGK	1	Unmodified	1565.7169	0.71690845	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	1	3	2	16.386	13.757	2	2.0261E-116	11725	160511_QHF_FH_JSI12i_1	268.93	243.69			0.98363	0.98434	11.173	6	1	Median	1.195	0.97542	NaN	1	0	Median	0.83721	0.97226	NaN	1	0	Median	1.0958	1.057	22.061	2	1	Median	0.98363	1.0476	7.5233	2	0	Median	555450000	285910000	269540000	136700000	59108000	77593000	153950000	83328000	70625000	126100000	68227000	57869000	138700000	75242000	63456000	1312	5147	1244	7811;7812;7813;7814;7815;7816;7817	10603;10604;10605;10606;10607;10608;10609;10610;10611;10612;10613;10614	10607			12	
AEGTAVEALR	0	Unmodified	1015.5298	0.52982336	5780				yes	yes	0	0	0	0		By MS/MS			1	0	1										1			20.546	20.284	2	0.013111	17393	160511_QHF_FH_JSI10i_1	44.349	0.57993	+		0.84286	1.0018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84286	1.0018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	416380000	225840000	190540000	0	0	0	416380000	225840000	190540000	0	0	0	0	0	0	1313	5780	1245	7818	10615	10615			1	
AEGTPNQGK	1	Unmodified	900.43011	0.43010932	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	4.6219	0.82666	2	4.5075E-08	2233	160511_QHF_FH_JSI10i_1	145.34	92.658			0.97838	0.98633	17.844	8	0	Median	1.1446	0.93832	NaN	1	0	Median	0.98271	1.1675	12.266	2	0	Median	1.0479	1.0368	12.041	3	0	Plateau	0.8253	0.8774	28.31	2	0	Median	1754000000	847620000	906380000	170800000	87490000	83313000	583730000	276580000	307150000	440390000	221940000	218460000	559080000	261610000	297460000	1314	5213	1246	7819;7820;7821;7822;7823;7824;7825;7826	10616;10617;10618;10619;10620;10621;10622;10623;10624;10625;10626;10627	10622			12	
AEGTTYRDELLTK	1	Unmodified	1495.7518	0.75183739	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	33.113	32.75	2;3	0.00039473	27665	160511_QHF_FH_JSI12i_3	108.37	82.434			0.97386	1.0018	15.632	6	0	Median	0.88917	0.77636	NaN	1	0	Median	1.0054	1.2273	NaN	1	0	Median	1.1208	1.0595	2.9018	2	0	Median	0.91762	0.94031	3.9348	2	0	Median	699870000	349450000	350430000	24070000	12766000	11304000	38072000	19225000	18848000	307360000	138600000	168760000	330370000	178850000	151520000	1315	179	1247	7827;7828;7829;7830;7831;7832	10628;10629;10630;10631;10632;10633;10634;10635;10636;10637	10634			10	
AEGTVFTEEDFQK	1	Unmodified	1499.678	0.67800374	3366	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.617	50.943	2	7.6695E-06	46089	160511_QHF_FH_JSI11i_1	129.82	106.44			0.42709	0.43053	52.416	4	4	Median	0.3279	0.26746	NaN	1	1	Median	0.55629	0.66105	NaN	1	1	Median	0.74573	0.6954	NaN	1	1	Median	0.27538	0.2804	NaN	1	1	Median	318070000	222040000	96022000	101650000	75525000	26125000	53527000	32540000	20988000	50039000	26291000	23748000	112850000	87689000	25161000	1316	3366	1248	7833;7834;7835;7836	10638;10639;10640;10641	10638			4	
AEGTVNEGRPESDAADHTGPK	1	Unmodified	2136.9672	0.96720291	4044	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		12.719	12.719	3;4	2.7614E-05	10233	160511_QHF_FH_JSI11i_3	57.366	54.128			0.90324	0.85106	2.4687	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90324	0.85106	2.4687	2	0	Median	NaN	NaN	NaN	0	0	Median	66244000	34927000	31317000	0	0	0	0	0	0	66244000	34927000	31317000	0	0	0	1317	4044	1249	7837;7838	10642;10643	10643			2	
AEGYEVAHGGR	0	Unmodified	1144.5261	0.52613497	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	9.2107	8.8567	2	4.8244E-13	6712	160511_QHF_FH_JSI9i_2	147.2	111.9			0.99228	1.0282	7.8954	5	0	Median	1.2403	1.0674	NaN	1	0	Median	0.81978	1.0118	NaN	1	0	Median	0.92	0.91528	NaN	1	0	Median	1.0271	1.0802	6.9793	2	0	Median	392360000	195310000	197060000	77270000	36517000	40753000	70536000	34883000	35653000	144530000	71995000	72531000	100030000	51913000	48120000	1318	1793	1250	7839;7840;7841;7842;7843	10644;10645;10646;10647;10648;10649;10650;10651	10646			8	
AEGYFISILQHLLLIR	0	Unmodified	1885.0826	0.082554423	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	100.02	91.582	3	4.5239E-121	55159	160513_QHF_FH_JSI10Kac_6	260.12	238.29			1.0153	0.97301	19.5	4	0	Median	0.92085	0.80145	NaN	1	0	Median	0.73899	0.88693	NaN	1	0	Median	1.1194	1.0674	NaN	1	0	Median	1.1607	1.2429	NaN	1	0	Median	1149200000	606830000	542340000	266500000	142690000	123810000	487980000	281350000	206620000	307660000	153180000	154470000	87041000	29605000	57436000	1319	4986	1251	7844;7845;7846;7847	10652;10653;10654;10655;10656;10657;10658	10658			7	
AEHASSLLELASTTK	1	Unmodified	1556.8046	0.80460124	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	53.744	53.465	2;3	6.5373E-21	45816	160511_QHF_FH_JSI12i_3	131.06	110.93			0.89535	0.85089	11.235	5	2	Median	NaN	NaN	NaN	0	0	Median	0.56227	0.69753	NaN	1	1	Median	0.92959	0.8761	4.1282	2	0	Median	0.823	0.83226	11.586	2	1	Median	514200000	274650000	239550000	0	0	0	88741000	62369000	26372000	177780000	87964000	89820000	247670000	124320000	123360000	1320	2947	1252	7848;7849;7850;7851;7852;7853	10659;10660;10661;10662;10663;10664;10665;10666;10667	10667			9	
AEHDQLLLNYAK	1	Unmodified	1413.7252	0.72522871	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.43		7	1					7		4	4	4	3	48.772	44.665	2;3	5.9005E-53	38107	160511_QHF_FH_JSI11i_2	212.15	193.37			1.0474	1.1391	15.624	12	5	Median	1.3746	1.1775	22.252	3	2	Median	0.82098	1.0131	11.203	3	1	Median	1.1985	1.2308	8.3865	3	0	Median	0.82513	0.92681	19.334	3	2	Plateau	2482200000	1180800000	1301400000	454540000	188280000	266260000	662640000	337360000	325290000	1217400000	570760000	646630000	147650000	84410000	63236000	1321	1180	1253	7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868	10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678;10679;10680;10681;10682;10683;10684;10685;10686;10687;10688;10689;10690;10691	10679			24	
AEHDQLLLNYAKK	2	Acetyl (K)	1583.8308	0.83075641	1180	P20700	LMNB1	Lamin-B1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								4			1	2	1	61.94	51.242	2;3	0.0021173	27915	160513_QHF_FH_JSI11Kac_5	66.989	54.931			0.82504	0.97711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82504	0.97711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8090600	5823700	2266900	0	0	0	5161600	2894800	2266900	0	0	0	2929000	2929000	0	1322	1180	1254	7869;7870;7871;7872	10692;10693;10694;10695	10692	1034		4	
AEHDSILAEK	1	Unmodified	1111.551	0.55095274	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.12	6	9	6				2	9		6	9	8	9	18.266	15.046	2;3	4.6538E-10	12513	160511_QHF_FH_JSI12i_2	139.38	89.342			1.0226	1.0069	36.527	26	9	Median	1.1982	1.024	8.3991	5	1	Median	0.97468	1.1909	58.717	7	3	Median	1.0127	0.98286	13.166	8	3	Median	0.65127	0.69585	46.425	6	2	Linear	5747500000	2845700000	2901800000	1009300000	473680000	535570000	1178600000	576230000	602410000	1785000000	830660000	954350000	1774600000	965140000	809480000	1323	1282	1255	7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904	10696;10697;10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709;10710;10711;10712;10713;10714;10715;10716;10717;10718;10719;10720;10721;10722;10723;10724;10725;10726;10727;10728;10729;10730;10731;10732;10733;10734;10735;10736;10737	10700			42	
AEHILLWMSK	1	Unmodified	1226.6482	0.64816436	2589	Q14999	CUL7	Cullin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	71.434	62.616	3	0.0006915	33230	160513_QHF_FH_JSI9Kac_6	55.401	53.034			1.2613	1.3329	28.097	4	1	Median	1.6933	1.424	NaN	1	0	Median	1.1671	1.3769	NaN	1	0	Median	1.363	1.2902	NaN	1	1	Median	0.72661	0.78148	NaN	1	0	Median	47123000	19024000	28099000	7096700	2719700	4377100	24912000	9310400	15601000	10418000	4744500	5673600	4696800	2249500	2447300	1324	2589	1256	7905;7906;7907;7908	10738;10739;10740	10739			3	
AEHIPAGK	1	Unmodified	821.43955	0.43955179	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	7.6705	7.2569	2	0.0046723	5090	160511_QHF_FH_JSI12i_2	67.981	30.335			0.81329	0.94778	16.733	3	0	Plateau	1.0935	0.94778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79666	0.80097	NaN	1	0	Median	1.019	1.1193	NaN	1	0	Median	191910000	102130000	89781000	45401000	17755000	27646000	0	0	0	86164000	51713000	34451000	60347000	32663000	27684000	1325	4108	1257	7909;7910;7911	10741;10742;10743	10741			3	
AEIDMLDIR	0	Unmodified	1074.5379	0.53794521	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	3.59	4	5	1				1			3	3	2	3	66.704	64.91	2	2.4626E-07	59306	160511_QHF_FH_JSI12i_1	155.07	124.88			1.0405	1.0267	9.1892	10	2	Median	1.2096	0.99905	0.098949	2	0	Median	0.84801	0.99192	12.899	3	0	Plateau	1.0405	1.018	2.8694	2	0	Median	1.0104	1.076	7.929	3	2	Plateau	1643600000	859580000	784040000	269730000	130280000	139460000	489310000	272280000	217030000	417500000	221920000	195580000	467070000	235100000	231960000	1326	932	1258	7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922	10744;10745;10746;10747;10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762;10763;10764	10750			21	
AEIENIK	1	Unmodified	815.43888	0.43888309	52;60	CON__P07744;CON__P19013;P19013	KRT4	Keratin, type II cytoskeletal 4	no	no	0	0	0	0		By MS/MS			1	0	1										1			22.491	22.215	2	0.027924	19465	160511_QHF_FH_JSI10i_1	53.351	10.437		+	0.62399	0.7371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62399	0.7371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143890000	93071000	50817000	0	0	0	143890000	93071000	50817000	0	0	0	0	0	0	1327	52;60	1259	7923	10765	10765			1	
AEIGIAMGSGTAVAK	1	Unmodified	1374.7177	0.71770049	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.79	51.118	2	2.7061E-07	46470	160511_QHF_FH_JSI12i_1	136.27	99.574			0.99718	1.0131	4.8782	5	2	Median	1.2854	1.0559	NaN	1	0	Median	0.88032	1.0208	NaN	1	0	Median	1.0041	0.9771	NaN	1	0	Median	0.95332	0.97007	6.1404	2	2	Median	429080000	195780000	233290000	67489000	28317000	39172000	102450000	44902000	57548000	90068000	41494000	48574000	169070000	81069000	87999000	1328	1103	1260	7924;7925;7926;7927;7928	10766;10767;10768;10769;10770;10771;10772;10773	10769			8	
AEIIADK	1	Unmodified	758.41742	0.41741937	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	18.742	15.333	2	0.0074664	13447	160511_QHF_FH_JSI12i_1	87.323	10.265			0.86809	0.86144	19.952	7	0	Median	0.88854	0.70738	NaN	1	0	Median	0.88601	1.0477	2.4872	2	0	Median	0.89374	0.87712	33.287	2	0	Median	0.75285	0.81336	8.122	2	0	Median	3576800000	1891700000	1685100000	967680000	512720000	454960000	947850000	520130000	427720000	778910000	424380000	354530000	882330000	434460000	447870000	1329	2361	1261	7929;7930;7931;7932;7933;7934;7935	10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784	10776			11	
AEIIPGVLFIDEVHMLDIESFSFLNR	0	Unmodified	3003.5416	0.54158061	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.56	94.839	3	1.0197E-78	55869	160513_QHF_FH_JSI10Kac_6	208.12	195.02			1.1973	1.4439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1973	1.4439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	268880000	141410000	127460000	0	0	0	268880000	141410000	127460000	0	0	0	0	0	0	1330	5487	1262	7936;7937	10785;10786	10786			2	
AEIISLCK	1	Unmodified	932.5001	0.50010314	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.5	6.02	3	1					2				1	4	1	43.678	43.199	2	0.0017591	39016	160511_QHF_FH_JSI11i_1	85.212	34.246			0.92035	0.9091	25.254	4	0	Median	NaN	NaN	NaN	0	0	Median	0.54145	0.64757	NaN	1	0	Median	0.97515	0.96292	24.379	2	0	Median	0.9859	1.0198	NaN	1	0	Median	200750000	114070000	86679000	0	0	0	54592000	34878000	19714000	104760000	56714000	48046000	41400000	22481000	18918000	1331	4521	1263	7938;7939;7940;7941;7942;7943	10787;10788;10789;10790;10791	10787			5	
AEIITVSDGR	0	Unmodified	1059.556	0.55603812	4370	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	39.1	33.152	2	0.00017476	29781	160511_QHF_FH_JSI11i_1	94.309	58.872			0.91164	0.98145	18.395	10	4	Median	1.0475	0.87374	NaN	1	0	Median	0.84509	1.004	14.815	3	1	Median	1.1018	1.0804	15.204	3	1	Median	0.7333	0.77427	19.714	3	2	Median	575750000	282150000	293590000	144060000	56459000	87598000	181390000	97568000	83819000	143320000	69972000	73349000	106980000	58151000	48829000	1332	4370	1264	7944;7945;7946;7947;7948;7949;7950;7951;7952;7953	10792;10793;10794;10795;10796;10797;10798;10799;10800;10801;10802;10803	10792			12	
AEILALQQALK	1	Unmodified	1196.7129	0.71287311	177	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.699	70.089	2	0.0013743	61328	160511_QHF_FH_JSI11i_2	76.465	46.655			1.3341	1.2966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3341	1.2966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9127400	4538200	4589200	0	0	0	0	0	0	9127400	4538200	4589200	0	0	0	1333	177	1265	7954	10804	10804			1	
AEILFLK	1	Unmodified	832.50584	0.50584045	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.989	65.088	2	0.0099713	56525	160511_QHF_FH_JSI11i_2	76.847	28.673			0.92524	1.0033	10.547	4	0	Median	1.3664	1.1989	NaN	1	0	Median	0.84521	1.0114	NaN	1	0	Median	0.99843	0.99525	NaN	1	0	Median	0.85741	0.93765	NaN	1	0	Median	85536000	43442000	42094000	17243000	7790400	9452600	18190000	11119000	7070800	30946000	14558000	16389000	19157000	9975600	9181800	1334	2648	1266	7955;7956;7957;7958	10805;10806	10805			2	
AEIMESIK	1	Unmodified	919.46847	0.46846866	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	34.63	33.999	2	0.005887	30421	160511_QHF_FH_JSI11i_1	64.265	14.138			0.86603	0.92741	21.625	6	0	Median	0.73157	0.61126	NaN	1	0	Median	0.86603	1.0387	9.4606	2	0	Median	0.93786	0.95036	10.029	2	0	Median	0.73216	0.77801	NaN	1	0	Median	283250000	143420000	139830000	27370000	15489000	11881000	108480000	52693000	55788000	97768000	48454000	49313000	49628000	26781000	22847000	1335	2560	1267	7959;7960;7961;7962;7963;7964	10807;10808;10809	10807			3	
AEIRYEGILYTIDTENSTVALAK	1	Unmodified	2569.3275	0.32754831	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	89.431	89.343	3	4.0111E-10	77457	160511_QHF_FH_JSI12i_3	89.365	69.816			1.0913	1.1008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0913	1.1008	NaN	1	1	Median	56080000	24260000	31820000	0	0	0	0	0	0	0	0	0	56080000	24260000	31820000	1336	3625	1268	7965;7966	10810;10811	10811			2	
AEISCIDNK	1	Unmodified	1048.4859	0.48590964	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			20.41	20.148	2	0.0058907	17388	160511_QHF_FH_JSI10i_1	56.432	32.229			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1337	512	1269	7967	10812	10812			1	
AEISDLDR	0	Acetyl (Protein N-term)	959.45599	0.45598972	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	47.539	46.881	2	0.013026	42500	160511_QHF_FH_JSI11i_1	40.002	29.128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1338	1912	1270	7968;7969	10813;10814	10813			2	
AEISDLDRQIEQLR	0	Acetyl (Protein N-term)	1726.885	0.88497683	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	1	0	1	By MS/MS			By MS/MS	1	0	2									1			1	87.377	86.723	2	0.00078529	77228	160511_QHF_FH_JSI9i_1	68.069	33.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1339	1912	1271	7970;7971	10815;10816	10816			2	
AEISFEDRK	1	Unmodified	1093.5404	0.54038805	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.37	4.46		11	12					4		6	6	7	8	23.454	21.974	2;3	1.9113E-09	18207	160511_QHF_FH_JSI12i_3	172.23	120.38			1.9889	2.0904	48.454	22	16	Linear	0.9417	0.787	31.808	4	3	Median	0.8245	0.95358	57.921	5	4	Median	0.77979	0.78897	62.39	6	4	Median	1.0057	1.1137	44.011	7	5	Median	6347400000	2849100000	3498200000	939180000	418020000	521160000	1285800000	688080000	597680000	1867900000	688780000	1179100000	2254500000	1054300000	1200300000	1340	1192	1272	7972;7973;7974;7975;7976;7977;7978;7979;7980;7981;7982;7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998	10817;10818;10819;10820;10821;10822;10823;10824;10825;10826;10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837;10838;10839;10840;10841;10842;10843;10844;10845;10846;10847;10848;10849;10850;10851;10852;10853	10852			37	
AEISGVQGSETQVLR	0	Unmodified	1572.8107	0.81074925	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	45.137	44.492	2	6.7792E-17	40087	160511_QHF_FH_JSI11i_1	126.34	101.88			0.96956	0.98453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96956	0.98453	NaN	1	1	Median	26978000	10156000	16822000	0	0	0	0	0	0	0	0	0	26978000	10156000	16822000	1341	3517	1273	7999;8000;8001;8002	10854;10855;10856;10857	10854			4	
AEITDAEGLGLK	1	Unmodified	1215.6347	0.63468237	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.202	52.535	2	1.6996E-07	47534	160511_QHF_FH_JSI11i_1	155.15	120.76			0.94725	0.87907	9.0448	4	0	Median	1.0595	0.87951	NaN	1	0	Median	0.7561	0.87445	NaN	1	0	Median	0.89588	0.87864	NaN	1	0	Median	1.0016	1.0515	NaN	1	0	Median	676400000	346030000	330370000	161600000	80391000	81212000	165160000	88889000	76276000	189810000	103050000	86765000	159820000	73698000	86121000	1342	2516	1274	8003;8004;8005;8006	10858;10859;10860;10861;10862;10863;10864	10859			7	
AEITFDDHK	1	Unmodified	1074.4982	0.49818889	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	24.003	23.37	2;3	3.0098E-05	20244	160511_QHF_FH_JSI10i_2	91.867	91.867			1.0358	0.99477	19.283	7	0	Median	1.1186	0.98548	NaN	1	0	Median	0.9225	1.1076	21.106	2	0	Median	1.1076	1.0939	13.436	2	0	Median	1.0612	1.1621	37.713	2	0	Median	779340000	406560000	372780000	102750000	52941000	49807000	172470000	101920000	70542000	286740000	133450000	153290000	217390000	118240000	99148000	1343	512	1275	8007;8008;8009;8010;8011;8012;8013;8014	10865;10866;10867;10868;10869;10870;10871;10872	10872			7	
AEITLVATKPEK	2	Unmodified	1298.7446	0.74456717	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	36.012	35.903	2;3	0.00033756	30486	160511_QHF_FH_JSI12i_3	116.55	82.586			0.9283	0.91445	21.088	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71182	0.66016	NaN	1	1	Median	0.77316	0.78594	26.204	2	1	Median	271400000	139350000	132040000	0	0	0	0	0	0	68476000	38353000	30123000	202920000	101000000	101920000	1344	5234	1276	8015;8016;8017;8018	10873;10874;10875;10876	10876			4	
AEKIASQMITEGR	1	Oxidation (M)	1448.7293	0.72932781	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	7.6385	7.223	2;3	0.016462	4818	160511_QHF_FH_JSI9i_1	42.809	22.225			1.1319	0.99782	16.314	3	0	Plateau	1.2346	0.98895	NaN	1	0	Median	1.1319	1.3286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95543	1.0163	NaN	1	0	Median	2094500000	983840000	1110600000	940320000	424940000	515380000	252400000	125310000	127090000	0	0	0	901730000	433580000	468150000	1345	4411	1277	8019;8020;8021	10877;10878;10879	10879		2467	2	
AEKNGVK	2	Acetyl (K)	786.42357	0.42356738	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		6.1616	-1.1634	2	0.0071832	2243	160513_QHF_FH_JSI11Kac_3	96.492	19.434			0.54202	0.58161	79.491	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87021	1.0203	NaN	1	0	Median	0.3376	0.33153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25142000	15364000	9777400	0	0	0	7282100	3032000	4250100	17860000	12332000	5527300	0	0	0	1346	775	1278	8022;8023	10880;10881;10882	10880	385		3	
AELAELPLR	0	Unmodified	1010.576	0.57604528	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	3	3	2	58.078	57.222	2	5.5517E-08	49565	160511_QHF_FH_JSI11i_2	143.01	79.53			0.98688	0.98801	4.1023	11	0	Median	1.1269	0.97745	1.3023	3	0	Plateau	0.80829	0.98801	3.4106	3	0	Median	1.0439	1.0558	6.0094	3	0	Median	0.89543	0.97615	4.3902	2	0	Median	2159300000	1051600000	1107700000	410270000	186900000	223370000	571630000	289550000	282070000	706570000	326200000	380370000	470870000	248940000	221940000	1347	4212	1279	8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034	10883;10884;10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895;10896;10897;10898	10896			14	
AELATEEFLPVTPILEGFVILR	0	Unmodified	2456.3567	0.3566636	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2		2	2	2	102.64	100.05	2;3	4.0306E-58	91278	160511_QHF_FH_JSI11i_2	223.72	210.89			0.8558	0.84223	24.906	5	4	Median	NaN	NaN	NaN	0	0	Median	0.64506	0.7605	2.4583	2	2	Median	0.92514	0.90803	10.638	2	1	Median	1.2175	1.3782	NaN	1	1	Median	282430000	144910000	137510000	0	0	0	118660000	78937000	39722000	124400000	60882000	63522000	39363000	5092000	34271000	1348	2370	1280	8035;8036;8037;8038;8039;8040	10899;10900;10901;10902;10903;10904	10900			6	
AELATEEFLPVTPILEGFVILRK	1	Unmodified	2584.4516	0.45162662	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				103.01	102.93	3	3.0529E-31	90789	160511_QHF_FH_JSI9i_2	182.27	178.93			1.0152	0.89781	NaN	1	0	Median	1.0152	0.89781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30712000	15256000	15456000	30712000	15256000	15456000	0	0	0	0	0	0	0	0	0	1349	2370	1281	8041	10905	10905			1	
AELDAAEK	1	Unmodified	845.41306	0.41306227	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	12.794	10.605	2	0.0001345	6723	160513_QHF_FH_JSI11Kac_3	122.52	53.601			0.99578	0.93031	21.89	4	1	Median	1.2427	1.0284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99578	0.97997	21.538	2	0	Median	0.66229	0.69659	NaN	1	1	Median	1622600000	752650000	869970000	539990000	209880000	330110000	0	0	0	477390000	238420000	238970000	605230000	304350000	300880000	1350	2307	1282	8042;8043;8044;8045	10906;10907;10908;10909;10910	10909			5	
AELDDTPMR	0	Oxidation (M)	1062.4652	0.4651742	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	2	2	2	20.393	16.967	2	0.00086422	23111	160511_QHF_FH_JSI11i_1	78.149	58.372			1.102	1.1654	51.874	8	1	Median	1.3493	1.0751	59.652	2	0	Median	0.60946	0.70742	79.501	2	0	Median	1.5214	1.4788	42.597	2	0	Median	0.89031	0.94914	39.336	2	1	Median	664260000	315840000	348410000	135200000	78082000	57119000	157620000	79519000	78104000	237650000	92503000	145150000	133780000	65739000	68044000	1351	1222	1283	8046;8047;8048;8049;8050;8051;8052;8053	10911;10912;10913;10914;10915	10911		849	5	
AELDDTPMR	0	Unmodified	1046.4703	0.47025958	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	30.009	25.94	2	3.5315E-05	23252	160511_QHF_FH_JSI12i_1	100.02	81.882			1.1258	1.1343	29.43	7	0	Median	1.174	0.95317	NaN	1	0	Median	0.94288	1.1343	NaN	1	0	Median	1.5085	1.4746	11.545	2	0	Median	1.1258	1.2015	33.598	3	0	Plateau	2674700000	1162800000	1511800000	634990000	293770000	341220000	684410000	338070000	346340000	682240000	225850000	456390000	673020000	305120000	367900000	1352	1222	1283	8054;8055;8056;8057;8058;8059;8060	10916;10917;10918;10919	10916			3	
AELDGTILK	1	Unmodified	958.53351	0.53351176	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	44.727	43.979	2	0.0036617	38996	160511_QHF_FH_JSI9i_1	59.35	35.395			0.8702	0.84379	11.198	3	0	Plateau	1.2544	1.0433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8702	0.84379	NaN	1	0	Median	0.8702	0.8819	NaN	1	0	Median	408050000	208510000	199540000	115890000	54582000	61313000	0	0	0	162850000	87270000	75580000	129310000	66660000	62648000	1353	3809	1284	8061;8062;8063	10920;10921;10922;10923;10924	10923			5	
AELDLMAPGPLPR	0	Acetyl (Protein N-term)	1420.7384	0.73843593	682	O95361	TRIM16	Tripartite motif-containing protein 16	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	97.263	97.072	2	8.39E-05	88015	160511_QHF_FH_JSI11i_1	99.815	86.006			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1354	682	1285	8064;8065;8066;8067	10925;10926;10927;10928	10925			4	
AELDLMAPGPLPR	0	Unmodified	1378.7279	0.72787125	682	O95361	TRIM16	Tripartite motif-containing protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		67.62	67.045	2	0.012418	60662	160511_QHF_FH_JSI10i_1	46.001	6.3792			0.80811	0.94142	7.0117	3	0	Plateau	1.2031	0.99847	NaN	1	0	Median	0.80811	0.94142	NaN	1	0	Median	0.89443	0.86833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	252590000	141640000	110960000	57561000	25952000	31610000	105510000	63659000	41853000	89522000	52029000	37493000	0	0	0	1355	682	1285	8068;8069;8070	10929;10930	10929			2	
AELEASR	0	Unmodified	774.38718	0.38718187	4665	Q9H254	SPTBN4	Spectrin beta chain, non-erythrocytic 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	2	3	1	7.7622	6.3897	2	0.0055967	5050	160511_QHF_FH_JSI10i_1	94.262	29.459			0.95234	0.94525	20.969	7	1	Median	1.2526	0.99333	NaN	1	0	Median	0.644	0.77294	23.265	2	1	Median	0.95234	0.94525	13.426	3	0	Median	1.1825	1.2579	NaN	1	0	Median	4660100000	2447000000	2213000000	1159400000	545080000	614280000	1277900000	783490000	494420000	1288400000	614440000	674010000	934360000	504040000	430320000	1356	4665	1286	8071;8072;8073;8074;8075;8076;8077	10931;10932;10933;10934;10935;10936;10937;10938;10939;10940;10941	10935			11	
AELEDLR	0	Unmodified	844.42905	0.42904669	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			26.683	26.372	2	0.013176	23306	160511_QHF_FH_JSI10i_1	71.296	17.616			0.56731	0.65242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56731	0.65242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29443000	17486000	11957000	0	0	0	29443000	17486000	11957000	0	0	0	0	0	0	1357	2988	1287	8078	10942	10942			1	
AELEIQK	1	Unmodified	829.45453	0.45453316	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.4	4.8	4					1				2	1		2	25.712	23.112	2	0.0087592	19798	160511_QHF_FH_JSI9i_1	71.296	17.944			4.7641	4.8999	83.484	4	0	Median	5.6919	4.6661	NaN	1	0	Median	4.2848	5.1455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1574	2.3173	123.5	2	0	Median	1799400000	299200000	1500200000	593010000	68466000	524540000	598520000	113050000	485460000	0	0	0	607910000	117680000	490230000	1358	877	1288	8079;8080;8081;8082;8083	10943;10944;10945;10946	10945			4	
AELEKHGYK	2	Acetyl (K)	1115.5611	0.56112349	1921	P60896	SHFM1	26S proteasome complex subunit DSS1	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								4			1	3		23.288	13.961	2;3	1.1848E-05	9657	160513_QHF_FH_JSI11Kac_5	124.23	102.7			0.27985	0.27611	137.01	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3457	1.5959	NaN	1	0	Median	0.17505	0.17207	66.877	2	1	Median	NaN	NaN	NaN	0	0	Median	38420000	28724000	9695500	0	0	0	4977900	1961000	3016900	33442000	26763000	6678600	0	0	0	1359	1921	1289	8084;8085;8086;8087	10947;10948;10949	10948	1925		3	
AELEQHLEQEQEFQVNK	1	Unmodified	2097.9967	0.99671212	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	3	2	2	49.058	48.342	3	4.4938E-17	41212	160511_QHF_FH_JSI12i_2	168.32	154.69			0.97366	0.90478	16.813	7	2	Median	0.97366	0.83671	NaN	1	0	Median	0.65256	0.7848	19.553	2	1	Median	1.0724	1.0572	2.5418	2	1	Median	0.9176	0.99829	13.908	2	0	Median	632940000	321420000	311520000	108170000	59443000	48731000	131700000	67756000	63943000	216270000	102460000	113810000	176800000	91765000	85033000	1360	2727	1290	8088;8089;8090;8091;8092;8093;8094;8095	10950;10951;10952;10953;10954;10955;10956;10957;10958;10959;10960;10961;10962;10963	10952			14	
AELGAGGDGHR	0	Acetyl (Protein N-term)	1080.4948	0.49483484	2521	Q14244	MAP7	Ensconsin	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	19.844	12.472	2	0.012459	8592	160513_QHF_FH_JSI11Kac_3	53.327	46.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1361	2521	1291	8096;8097;8098;8099	10964;10965;10966;10967	10964			4	
AELGAGGDGHRGGDGAVR	0	Acetyl (Protein N-term)	1692.7928	0.79280778	2521	Q14244	MAP7	Ensconsin	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	2	3	19.42	18.775	2;3	6.906E-05	15437	160511_QHF_FH_JSI12i_2	65.107	59.828			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1362	2521	1292	8100;8101;8102;8103;8104;8105;8106;8107;8108	10968;10969;10970;10971;10972;10973;10974;10975;10976	10969			9	
AELGALPDDFIDSLEK	1	Unmodified	1731.8567	0.85669639	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	101.26	101.14	2	1.1132E-07	91856	160511_QHF_FH_JSI11i_1	138.42	107.19			1.1728	1.2087	3.7285	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2405	1.2087	NaN	1	1	Median	1.1419	1.1878	5.0768	2	2	Median	348730000	154330000	194400000	0	0	0	0	0	0	99471000	38277000	61195000	249260000	116060000	133210000	1363	4551	1293	8109;8110;8111	10977;10978;10979	10977			3	
AELGEADEAELQR	0	Acetyl (Protein N-term)	1471.6791	0.67906638	5662	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	3			3						1	1	2	2	58.906	54.65	2	2.0973E-06	49727	160511_QHF_FH_JSI11i_1	157.38	152.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1364	5662	1294	8112;8113;8114;8115;8116;8117	10980;10981;10982;10983;10984;10985	10980			6	
AELGIPLEEVPPEEINYLTR	0	Unmodified	2281.1842	0.18417854	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	6									1	2	1	2	101.14	101.04	2;3	6.4575E-83	91578	160511_QHF_FH_JSI12i_1	248.23	208.6			0.985	1.1237	11.159	6	0	Median	1.3646	1.1	NaN	1	0	Median	0.985	1.1711	2.5456	2	0	Median	0.95232	0.94388	NaN	1	0	Median	0.97883	1.0259	15.898	2	0	Median	1418400000	716480000	701900000	179250000	79791000	99464000	594490000	297260000	297240000	201090000	107780000	93313000	443540000	231650000	211890000	1365	2480	1295	8118;8119;8120;8121;8122;8123	10986;10987;10988;10989;10990;10991	10986			5	
AELGLNEHHQNEVINYMR	0	Acetyl (Protein N-term)	2208.0382	0.03819978	4912	Q9NQ48	LZTFL1	Leucine zipper transcription factor-like protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.226	63.323	3	1.9901E-07	55134	160511_QHF_FH_JSI11i_2	113.29	107.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1366	4912	1296	8124;8125;8126;8127	10992;10993;10994;10995;10996	10994			5	
AELGTDLLSQLSLEDQK	1	Unmodified	1858.9524	0.95238769	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									4	3	3	2	94.913	94.601	2;3	1.8836E-33	85931	160511_QHF_FH_JSI11i_1	157.33	126.15			0.76988	0.76286	19.952	10	7	Median	0.74834	0.61672	17.204	3	3	Plateau	0.62219	0.72903	26.206	3	2	Median	0.89049	0.85845	15.065	2	2	Median	0.7886	0.83418	14.268	2	0	Median	447990000	270860000	177130000	60340000	39118000	21223000	165990000	111330000	54664000	120640000	66271000	54367000	101020000	54148000	46876000	1367	5479	1297	8128;8129;8130;8131;8132;8133;8134;8135;8136;8137;8138;8139	10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007;11008;11009;11010;11011;11012;11013;11014	10999			18	
AELHQLSGGEK	1	Unmodified	1167.5884	0.58840088	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.01	1	7	1					4		3	3	4	3	14.956	12.289	2;3	2.0838E-07	10176	160511_QHF_FH_JSI11i_2	139.86	110.9			0.71575	0.81014	30.829	12	1	Median	0.95785	0.82017	37.741	3	0	Median	0.70487	0.85682	39.949	3	0	Median	0.88986	0.89092	24.932	3	0	Median	0.56618	0.63079	27.638	3	1	Median	1091500000	618750000	472710000	211680000	117640000	94040000	257370000	144550000	112830000	504680000	276300000	228370000	117740000	80264000	37474000	1368	5445	1298	8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152	11015;11016;11017;11018;11019;11020;11021;11022;11023;11024;11025;11026;11027;11028;11029;11030;11031;11032;11033;11034;11035;11036;11037	11026			23	
AELHVLDVK	1	Unmodified	1022.576	0.57604528	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		40.475	39.763	3	0.0074347	34074	160511_QHF_FH_JSI11i_2	39.848	28.135			1.1256	1.2329	14	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9263	1.1167	NaN	1	1	Median	1.3679	1.3612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41733000	19844000	21889000	0	0	0	14951000	9098600	5852500	26782000	10746000	16036000	0	0	0	1369	1599	1299	8153;8154	11038;11039	11038			2	
AELIKTHHNDTELIR	1	Acetyl (K)	1830.9588	0.95881047	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.357	38.668	3	0.013416	21034	160513_QHF_FH_JSI11Kac_6	48.823	27.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1973400	1973400	0	0	0	0	0	0	0	1973400	1973400	0	0	0	0	1370	1693	1300	8155	11040	11040	1710		1	
AELIQKK	2	Acetyl (K);Acetyl (Protein N-term)	912.52803	0.52803245	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	1	1	0	1		By MS/MS	By MS/MS		11	0				2							1	1		64.009	54.485	2	0.0056534	21966	160513_QHF_FH_JSI10Kac_1	46.37	17.032			1.3546	1.5055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3546	1.5055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1363500	579670	783800	0	0	0	1363500	579670	783800	0	0	0	0	0	0	1371	263	1301	8156;8157	11041;11042	11042	144		2	
AELIVQPELK	1	Unmodified	1138.6598	0.6597749	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.98	4	2				2	2			2	3	2	3	60.905	57.139	2	2.9818E-14	51403	160511_QHF_FH_JSI11i_1	163.32	144.88			0.83619	0.97656	22.585	9	1	Median	0.8994	0.76954	32.624	2	0	Median	0.81826	0.97656	0.84188	3	1	Median	1.0388	1.0271	NaN	1	0	Median	0.91897	0.98015	29.65	3	0	Median	1538000000	832670000	705330000	349930000	188060000	161880000	416830000	241300000	175530000	412960000	208100000	204850000	358280000	195210000	163070000	1372	1085	1302	8158;8159;8160;8161;8162;8163;8164;8165;8166;8167	11043;11044;11045;11046;11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058	11044			16	
AELLDNEK	1	Unmodified	930.46583	0.46582612	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	20.06	19.551	2	0.0021249	16483	160511_QHF_FH_JSI9i_1	82.452	12.454			1.0551	1.0719	5.9629	4	0	Median	1.3982	1.1564	NaN	1	0	Median	0.88068	1.0097	NaN	1	0	Median	1.0618	1.0439	NaN	1	0	Median	1.0484	1.1006	NaN	1	0	Median	458060000	248600000	209460000	113570000	54020000	59546000	117190000	70477000	46709000	117770000	61263000	56510000	109540000	62840000	46699000	1373	4837	1303	8168;8169;8170;8171;8172	11059;11060;11061;11062	11061			4	
AELLDNEKPAAVVAPITTGYTVK	2	Unmodified	2399.2948	0.29479162	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	76.639	75.395	3	0.0099305	65155	160511_QHF_FH_JSI12i_2	33.074	20.396			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1374	4837	1304	8173	11063	11063			1	
AELLEAFK	1	Unmodified	919.50148	0.50148335	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	59.938	58.604	2	0.014843	51914	160511_QHF_FH_JSI10i_2	49.833	25.647			1.6248	1.7747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6248	1.7747	NaN	1	1	Median	21428000	8675800	12752000	0	0	0	0	0	0	0	0	0	21428000	8675800	12752000	1375	3935	1305	8174;8175	11064;11065	11065			2	
AELLEIIK	1	Unmodified	927.56408	0.56408361	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			69.655	68.847	2	0.017199	61148	160511_QHF_FH_JSI10i_2	47.082	22.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1376	3236	1306	8176	11066	11066			1	
AELLLLK	1	Unmodified	798.52149	0.52149051	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			61.507	60.599	2	0.014706	53768	160511_QHF_FH_JSI10i_2	65.803	0			0.97716	0.99616	12.217	2	0	Median	1.2796	1.086	NaN	1	0	Median	0.74618	0.91372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61412000	32143000	29269000	29654000	15032000	14622000	31757000	17111000	14646000	0	0	0	0	0	0	1377	3756	1307	8177;8178	11067	11067			1	
AELLRFPER	0	Unmodified	1129.6244	0.62439245	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	3	1		47.286	46.247	3	0.0046122	38038	160511_QHF_FH_JSI9i_3	43.282	24.537			0.87952	1.0495	31.677	5	2	Median	1.3638	1.1568	7.4097	2	0	Median	0.82975	1.0019	6.5682	2	1	Median	0.59301	0.5449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	288250000	132910000	155340000	142620000	55904000	86718000	124690000	62320000	62372000	20938000	14686000	6252200	0	0	0	1378	1241	1308	8179;8180;8181;8182;8183;8184	11068;11069;11070;11071;11072;11073;11074;11075;11076;11077	11073			10	
AELMEISEDK	1	Unmodified	1163.538	0.53800479	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.545	41.89	2	6.0186E-10	38087	160511_QHF_FH_JSI12i_1	138.66	115.92			1.0039	1.0124	17.333	4	0	Median	1.7008	1.4061	NaN	1	0	Median	0.81485	0.96945	NaN	1	0	Median	1.0371	0.99395	NaN	1	0	Median	0.97175	1.0313	NaN	1	0	Median	2918300000	1442000000	1476300000	487550000	209290000	278250000	730300000	408100000	322200000	983940000	474950000	508990000	716510000	349620000	366900000	1379	840	1309	8185;8186;8187;8188	11078;11079;11080;11081;11082;11083;11084;11085;11086	11081			9	
AELMEISEDK	1	Oxidation (M)	1179.5329	0.53291941	840	P05455	SSB	Lupus La protein	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				43.119	41.902	2	1.7156E-05	37133	160511_QHF_FH_JSI9i_1	103.7	83.371			2.0605	1.7016	NaN	1	0	Median	2.0605	1.7016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89231000	30527000	58705000	89231000	30527000	58705000	0	0	0	0	0	0	0	0	0	1380	840	1309	8189	11087;11088	11087		356	2	
AELMLLSEIADPTR	0	Acetyl (Protein N-term)	1599.8178	0.81780846	4327	Q99941	ATF6B	Cyclic AMP-dependent transcription factor ATF-6 beta;Processed cyclic AMP-dependent transcription factor ATF-6 beta	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			103.43	103.34	2	0.00023479	94179	160511_QHF_FH_JSI10i_1	86.313	59.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1381	4327	1310	8190;8191	11089;11090	11089			2	
AELNEFLTR	0	Unmodified	1091.5611	0.56112349	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.94	4	2	6				2	4		4	6	3	5	58.945	54.12	2	7.6951E-24	29926	160513_QHF_FH_JSI12Kac_4	182.65	140.54			0.86566	0.99353	7.2692	15	3	Median	1.2627	1.0456	4.3504	4	1	Median	0.83468	0.98088	2.3876	5	1	Median	1.0218	1.005	1.6179	2	0	Median	0.85218	0.92188	5.9668	4	1	Median	9296500000	4577500000	4719000000	2683300000	1140200000	1543100000	3568900000	1908400000	1660500000	1750100000	799970000	950160000	1294100000	728870000	565270000	1382	1227	1311	8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209	11091;11092;11093;11094;11095;11096;11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121;11122;11123;11124	11114			34	
AELNNEK	1	Unmodified	816.39775	0.39774656	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	6	1					1				1		1		5.8086	1.8464	2	0.0016711	2129	160513_QHF_FH_JSI11Kac_3	106.04	30.933			1.1089	0.98856	9.9306	2	0	Median	1.3106	1.0605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93827	0.92152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	418690000	186030000	232660000	401800000	177030000	224770000	0	0	0	16897000	9000700	7896600	0	0	0	1383	2046	1312	8210;8211	11125;11126	11125			2	
AELNPWPEYIYTR	0	Unmodified	1650.8042	0.80420731	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	1	2	3	80.213	79.539	2	3.1608E-15	68689	160511_QHF_FH_JSI12i_2	158.3	129.5			0.95217	0.96638	6.8335	6	2	Median	1.074	0.91047	NaN	1	0	Median	0.8309	1.012	NaN	1	0	Median	0.95217	0.94864	1.8754	2	2	Median	0.95104	1.036	9.0917	2	0	Median	1133600000	613340000	520230000	162290000	79630000	82656000	194070000	105570000	88504000	505160000	295000000	210160000	272060000	133140000	138920000	1384	1282	1313	8212;8213;8214;8215;8216;8217;8218	11127;11128;11129;11130;11131;11132;11133;11134;11135;11136	11129			10	
AELNSDKK	2	Unmodified	903.46616	0.46616048	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	4.7964	4.4633	2	0.0016026	2388	160511_QHF_FH_JSI11i_1	87.639	32.109			1.0182	1.1854	17.018	5	0	Median	0.9613	0.82199	NaN	1	0	Median	1.0182	1.2433	NaN	1	0	Median	1.2013	1.1873	0.223	2	0	Median	0.90365	1.0177	NaN	1	0	Median	528250000	246640000	281620000	113730000	54768000	58966000	85903000	39194000	46710000	242640000	112390000	130260000	85974000	40290000	45684000	1385	2296	1314	8219;8220;8221;8222;8223	11137;11138	11137			2	
AELPVTDK	1	Unmodified	871.4651	0.46509784	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	24.667	24.139	2	0.039568	14295	160513_QHF_FH_JSI11Kac_3	46.426	7.6341			0.84064	0.87258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84064	0.87258	NaN	1	0	Median	517260000	283560000	233700000	0	0	0	0	0	0	0	0	0	517260000	283560000	233700000	1386	1443	1315	8224;8225	11139;11140	11140			2	
AELQLPPPPPPGHYGAWAAQELQAK	1	Unmodified	2665.3653	0.36527122	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	86.107	85.679	3;4	6.7138E-10	76482	160511_QHF_FH_JSI11i_3	83.701	80.735			1.0497	1.0444	4.777	8	3	Median	1.212	1.0549	NaN	1	0	Median	0.78827	0.96927	NaN	1	1	Median	1.0775	1.0557	5.1399	4	2	Median	0.94589	1.0174	2.7955	2	0	Median	442900000	216460000	226440000	41890000	22007000	19883000	66313000	40497000	25816000	268450000	124630000	143820000	66242000	29318000	36924000	1387	2412	1316	8226;8227;8228;8229;8230;8231;8232;8233	11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154	11142			14	
AELQQLR	0	Acetyl (Protein N-term)	898.48723	0.48723027	3997	Q96C01	FAM136A	Protein FAM136A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	1	2	3	49.128	45.958	1;2	0.0015603	41394	160511_QHF_FH_JSI11i_1	99.919	69.734			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1388	3997	1317	8234;8235;8236;8237;8238;8239;8240	11155;11156;11157;11158;11159;11160;11161;11162;11163	11155			9	
AELQSIEEGVQGQQDALNSAK	1	Unmodified	2214.0764	0.076419005	3750	Q8WTW3	COG1	Conserved oligomeric Golgi complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	61.775	61.05	3	8.2073E-08	54221	160511_QHF_FH_JSI9i_1	89.663	80.839			0.9994	0.98416	5.1046	3	0	Plateau	1.2577	1.0189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9994	0.95061	NaN	1	0	Median	0.99852	1.0501	NaN	1	0	Median	147580000	66954000	80621000	50620000	21913000	28707000	0	0	0	51361000	26827000	24534000	45594000	18214000	27380000	1389	3750	1318	8241;8242;8243	11164;11165;11166	11166			2	
AELQTALAHTQHAAR	0	Unmodified	1616.8383	0.83830141	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	23.233	22.971	3;4	2.0231E-05	19390	160511_QHF_FH_JSI11i_3	107.35	93.318			0.88377	0.84166	25.638	5	0	Median	NaN	NaN	NaN	0	0	Median	0.96922	1.1299	NaN	1	0	Median	0.86336	0.8108	5.2816	2	0	Median	0.71758	0.73862	36.989	2	0	Median	183100000	95463000	87639000	0	0	0	24779000	12177000	12601000	103480000	56677000	46804000	54842000	26608000	28234000	1390	2270	1319	8244;8245;8246;8247;8248	11167;11168;11169	11167			2	
AELRDDPIISTHLAK	1	Unmodified	1677.905	0.90498399	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	5	2	46.524	46.075	2;3;4	1.8267E-07	39150	160511_QHF_FH_JSI12i_3	138.73	121.65			0.78127	0.83567	58.609	10	5	Median	1.1654	0.99228	NaN	1	0	Median	0.77453	0.95032	1.3102	2	1	Median	0.8005	0.73595	79.672	5	3	Median	0.77304	0.78562	3.2059	2	1	Median	2439500000	1275100000	1164400000	170280000	77409000	92872000	297390000	162880000	134510000	1313700000	697700000	615990000	658100000	337120000	320980000	1391	109	1320	8249;8250;8251;8252;8253;8254;8255;8256;8257;8258	11170;11171;11172;11173;11174;11175;11176;11177;11178;11179;11180;11181	11181			12	
AELSEEALLSVLPTIR	0	Acetyl (Protein N-term)	1781.9775	0.97748023	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	103.25	103.14	2	7.6179E-36	91249	160511_QHF_FH_JSI9i_1	240.52	215.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1392	1573	1321	8259;8260;8261	11182;11183;11184	11184			3	
AELSYRGPVSGTEPEPVYSMEAADYR	0	Unmodified	2873.3178	0.31778826	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	68.81	68.384	3	1.0869E-20	60991	160511_QHF_FH_JSI11i_3	120.66	115.12			1.14	1.1971	9.8317	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0967	1.3254	NaN	1	0	Median	1.23	1.1971	9.9649	2	1	Median	1.0375	1.0903	NaN	1	0	Median	261000000	109710000	151290000	0	0	0	73512000	28660000	44852000	128350000	54860000	73489000	59138000	26189000	32948000	1393	2522	1322	8262;8263;8264;8265	11185;11186;11187;11188;11189;11190;11191;11192;11193	11186			9	
AELTALESLIEMGFPR	0	Acetyl (Protein N-term);Oxidation (M)	1833.9183	0.91825079	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	104.12	104.04	2	4.9622E-10	94829	160511_QHF_FH_JSI10i_1	180.18	156.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1394	2215	1323	8266;8267;8268;8269;8270;8271	11194;11195;11196;11197;11198;11199	11197		1841	6	
AELTALESLIEMGFPR	0	Acetyl (Protein N-term)	1817.9233	0.92333617	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	6.05	4	5	1						3	5	2	3	3	104.47	102.52	2;3	4.3435E-55	57992	160513_QHF_FH_JSI10Kac_6	236.11	194.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1395	2215	1323	8272;8273;8274;8275;8276;8277;8278;8279;8280;8281;8282;8283;8284	11200;11201;11202;11203;11204;11205;11206;11207;11208;11209;11210;11211;11212;11213;11214;11215	11215			16	
AELTSQESQISTYEEELAK	1	Unmodified	2155.0168	0.016838441	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			71.231	70.998	2	1.5172E-11	64375	160511_QHF_FH_JSI10i_1	114.21	88.084			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1396	1537	1324	8285	11216	11216			1	
AELTTLLEQWEK	1	Unmodified	1459.7559	0.75586013	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	95.925	95.591	2	0.00058951	83912	160511_QHF_FH_JSI11i_2	83.081	61.336			0.76704	0.79546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76704	0.79546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21532000	13882000	7650600	0	0	0	0	0	0	21532000	13882000	7650600	0	0	0	1397	5620	1325	8286;8287	11217;11218	11218			2	
AELTVEVR	0	Acetyl (Protein N-term)	957.51311	0.51311067	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	1	0	0		By MS/MS		By MS/MS	1	0	2										1		1	55.943	55.547	2	0.0039243	50210	160511_QHF_FH_JSI12i_1	52.716	30.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1398	1725	1326	8288;8289	11219;11220	11219			2	
AELVQLEDEITTLR	0	Unmodified	1628.8621	0.86211612	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	3	2	3	90.599	90.102	2;3	2.3586E-15	82091	160511_QHF_FH_JSI11i_1	167.44	131.48			1.0527	1.069	9.0751	8	4	Median	1.2436	1.0842	NaN	1	1	Median	0.77845	0.93416	6.4763	2	1	Median	1.1047	1.0816	0.58493	2	1	Median	0.98625	1.0608	8.2928	3	1	Plateau	438400000	228680000	209720000	57839000	27719000	30120000	127860000	71791000	56069000	135690000	66088000	69603000	117010000	63081000	53929000	1399	2779	1327	8290;8291;8292;8293;8294;8295;8296;8297;8298	11221;11222;11223;11224;11225;11226;11227;11228;11229;11230	11222			9	
AELVQLVSPFLGK	1	Unmodified	1399.8075	0.80750177	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		101.25	101.16	2	1.702E-09	89678	160511_QHF_FH_JSI10i_2	134.13	87.668			1.2465	1.0541	16.667	3	1	Median	1.2465	1.0541	NaN	1	0	Median	0.82462	1.012	NaN	1	0	Median	1.3588	1.3755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	226250000	111920000	114330000	50584000	25461000	25122000	86387000	51345000	35042000	89277000	35114000	54163000	0	0	0	1400	4247	1328	8299;8300;8301	11231;11232	11232			1	
AEMDMVAWGVDLASVEQHINSHR	0	Unmodified	2594.2006	0.20059044	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		100.96	100.85	4	4.0827E-05	88626	160511_QHF_FH_JSI9i_2	67.413	64.447			1.817	1.7027	45.318	2	0	Median	1.4329	1.2359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3041	2.3459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104100000	31954000	72142000	45056000	16408000	28649000	0	0	0	59040000	15547000	43493000	0	0	0	1401	1085	1329	8302;8303	11233;11234	11233			0	
AEMDPVAEFPQPPGAAR	0	Acetyl (Protein N-term)	1823.8512	0.85123386	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				84.649	83.816	2	0.0023068	74571	160511_QHF_FH_JSI9i_1	54.023	38.394			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1402	4821	1330	8304	11235	11235			1	
AEMEAVFLENLR	0	Unmodified	1420.7021	0.70205043	2932	Q5T013	HYI	Putative hydroxypyruvate isomerase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.268	83.206	2	0.048547	71942	160511_QHF_FH_JSI12i_2	44.309	22.846			1.2055	1.3537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2055	1.3537	NaN	1	1	Median	11484000	5254400	6229400	0	0	0	0	0	0	0	0	0	11484000	5254400	6229400	1403	2932	1331	8305	11236	11236			1	
AEMGTPK	1	Unmodified	732.34763	0.34762524	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			7.9533	7.4932	2	0.012945	5360	160511_QHF_FH_JSI10i_1	72.138	55.212			1.4301	1.4165	27.034	2	2	Median	2.0717	1.7149	NaN	1	1	Median	0.98723	1.1701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151400000	91777000	59621000	56794000	27775000	29019000	94604000	64002000	30602000	0	0	0	0	0	0	1404	2607	1332	8306;8307	11237;11238	11237			2	
AEMVVPDFSELFK	1	Unmodified	1510.7378	0.73776723	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	101.73	101.64	2	6.4437E-05	92353	160511_QHF_FH_JSI11i_1	137.89	101.47			0.56559	0.61654	35.946	4	4	Median	0.37245	0.31547	NaN	1	1	Median	0.5843	0.68367	NaN	1	1	Median	0.69652	0.65751	NaN	1	1	Median	0.54748	0.57811	NaN	1	1	Median	318230000	167010000	151220000	32626000	25709000	6916200	169040000	70884000	98153000	66319000	40240000	26078000	50245000	30174000	20071000	1405	4868	1333	8308;8309;8310;8311;8312	11239;11240;11241;11242;11243	11239			5	
AENAGLSSTAGLLR	0	Unmodified	1358.7154	0.7153923	1113	P17275	JUNB	Transcription factor jun-B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.672	50.28	2	0.00011123	43056	160511_QHF_FH_JSI12i_2	106.01	94.371			1.2424	1.3849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2424	1.3849	NaN	1	0	Median	34160000	16892000	17268000	0	0	0	0	0	0	0	0	0	34160000	16892000	17268000	1406	1113	1334	8313	11244	11244			1	
AENDVDNELLDYEDDEVETAAGGDGAEAPAKK	2	Acetyl (Protein N-term)	3391.4699	0.46992763	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			81.791	81.636	3	1.836E-26	74028	160511_QHF_FH_JSI10i_1	125.59	123.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16112000	16112000	0	0	0	0	16112000	16112000	0	0	0	0	0	0	0	1407	2474	1335	8314	11245	11245			1	
AENFFILR	0	Unmodified	1008.5393	0.53926584	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.43	68.532	2	6.8231E-05	59847	160511_QHF_FH_JSI11i_2	147.34	101.32			0.94256	0.97131	5.9522	4	0	Median	1.1685	1.0056	NaN	1	0	Median	0.73398	0.90168	NaN	1	0	Median	1.0186	1.0241	NaN	1	0	Median	0.8722	0.9382	NaN	1	0	Median	951280000	487060000	464210000	181260000	85683000	95579000	188920000	112740000	76180000	345130000	159530000	185600000	235960000	129100000	106850000	1408	1905	1336	8315;8316;8317;8318	11246;11247;11248;11249;11250;11251	11249			6	
AENGESSGPPRPSR	0	Acetyl (Protein N-term)	1481.6859	0.68588309	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	13.824	13.32	2	0.00033476	10614	160511_QHF_FH_JSI9i_1	78.692	52.754			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1409	5299	1337	8319;8320;8321	11252;11253;11254	11254			3	
AENIPAVVIEIK	1	Unmodified	1294.7497	0.74965254	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	75.09	74.721	2	0.00098236	68117	160511_QHF_FH_JSI12i_1	66.267	53.739			0.94663	1.0418	0.19531	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88186	1.0433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0161	1.0404	NaN	1	0	Median	89305000	47631000	41674000	0	0	0	55868000	32018000	23850000	0	0	0	33437000	15613000	17823000	1410	5739	1338	8322;8323	11255;11256	11255			2	
AENKVENETDEGDK	2	Unmodified	1576.6853	0.68527397	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	7.6063	7.2578	2;3	4.0847E-05	4984	160511_QHF_FH_JSI11i_1	73.593	55.181			1.1227	1.0798	45.451	4	4	Median	1.1959	0.94588	NaN	1	1	Median	1.054	1.2326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98735	1.0231	76.274	2	2	Median	201510000	78320000	123190000	25673000	8084000	17589000	47611000	20540000	27070000	23753000	0	23753000	104470000	49696000	54775000	1411	3907	1339	8324;8325;8326;8327;8328;8329	11257;11258;11259;11260;11261;11262	11258			6	
AENLLDGPPNPKR	1	Acetyl (K);Acetyl (Protein N-term)	1503.7682	0.76815616	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11.3	0.471				2	1						2		1	76.652	68.194	2	6.1647E-08	26819	160513_QHF_FH_JSI10Kac_1	141.95	122.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1412	3886	1340	8330;8331;8332	11263;11264;11265	11265	2973		3	
AENLLLDADMNIK	1	Unmodified	1458.7388	0.73882986	3214	Q7KZI7	MARK2	Serine/threonine-protein kinase MARK2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	103.23	103.14	2	0.0074638	93757	160511_QHF_FH_JSI12i_1	51.436	36.975			0.91432	0.98371	24.626	4	0	Median	1.7186	1.3985	NaN	1	0	Median	0.87653	1.0323	NaN	1	0	Median	0.95373	0.93743	NaN	1	0	Median	0.74118	0.7752	NaN	1	0	Median	215380000	111210000	104170000	21163000	8659000	12504000	89874000	42045000	47829000	41351000	19147000	22204000	62996000	41360000	21636000	1413	3214	1341	8333;8334;8335;8336	11266;11267	11266			2	
AENLQLLTENELHR	0	Unmodified	1678.8638	0.86384745	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	1	3	57.75	57.003	2;3	4.479E-05	48945	160511_QHF_FH_JSI12i_2	89.283	75.474			1.1167	1.0264	31.794	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0565	1.2665	NaN	1	0	Median	1.1464	1.1596	NaN	1	0	Median	1.5134	1.6533	45.042	2	0	Median	657450000	313910000	343540000	0	0	0	152680000	78856000	73823000	252770000	130280000	122490000	252000000	104780000	147220000	1414	637	1342	8337;8338;8339;8340;8341	11268;11269;11270;11271	11268			3	
AENNPWVTPIADQFQLGVSHVFEYIR	0	Unmodified	3029.5036	0.50355562	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	97.684	88.259	3	5.3133E-65	48321	160513_QHF_FH_JSI12Kac_6	193.09	180.75			0.98764	1.056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98764	1.056	NaN	1	0	Median	286900000	153450000	133450000	0	0	0	0	0	0	122560000	71080000	51484000	164330000	82373000	81962000	1415	2668	1343	8342;8343	11272	11272			1	
AENNSEVGASGYGVPGPTWDR	0	Unmodified	2161.9665	0.96647463	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	57.812	57.229	2;3	1.0228E-120	50813	160511_QHF_FH_JSI9i_1	344.16	330.96			1.0638	1.0965	10.784	7	0	Median	1.0887	0.90243	NaN	1	0	Median	0.89428	1.0416	7.2707	2	0	Median	1.2186	1.1906	7.7134	2	0	Median	1.0128	1.0614	7.2478	2	0	Median	1357500000	701060000	656420000	200020000	96609000	103410000	353690000	194670000	159030000	417970000	207100000	210860000	385800000	202670000	183120000	1416	2265	1344	8344;8345;8346;8347;8348;8349;8350;8351	11273;11274;11275;11276;11277;11278;11279;11280;11281;11282;11283;11284;11285;11286;11287	11287			15	
AENPSLENHR	0	Acetyl (Protein N-term)	1207.5582	0.55816338	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	17.397	14.68	2	2.4491E-07	12167	160511_QHF_FH_JSI9i_1	123.86	111.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1417	147	1345	8352;8353;8354;8355;8356;8357	11288;11289;11290;11291;11292;11293	11291			6	
AENPYLFLR	0	Unmodified	1121.5869	0.58694431	3449	Q8IXT5	RBM12B	RNA-binding protein 12B	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			64.099	63.256	2	0.0053063	56019	160511_QHF_FH_JSI10i_2	64.207	36.682			0.78001	0.96234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78001	0.96234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31085000	14362000	16723000	0	0	0	31085000	14362000	16723000	0	0	0	0	0	0	1418	3449	1346	8358	11294	11294			1	
AENQPIRDVLK	1	Unmodified	1281.7041	0.70409934	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							3	3	6	1	32.489	31.895	2;3	1.6017E-09	28136	160511_QHF_FH_JSI10i_2	123.79	74.998			0.82468	0.90662	38.568	13	4	Median	1.1879	0.99388	16.456	3	2	Plateau	0.81818	0.95639	5.2773	3	0	Plateau	0.8758	0.86965	53.93	6	2	Median	0.5117	0.52629	NaN	1	0	Median	2635500000	1399600000	1235800000	723510000	318550000	404950000	415910000	224360000	191540000	1216100000	662440000	553680000	279910000	194240000	85666000	1419	1544	1347	8359;8360;8361;8362;8363;8364;8365;8366;8367;8368;8369;8370;8371	11295;11296;11297;11298;11299;11300;11301;11302;11303;11304;11305;11306;11307;11308;11309;11310	11309			16	
AENQVLAMR	0	Unmodified	1030.523	0.52296385	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	30.778	27.633	2	1.2332E-16	23987	160511_QHF_FH_JSI9i_2	178.94	144.85			0.95113	1.0003	11.393	11	2	Median	1.1845	0.98382	4.9956	2	1	Median	0.74348	0.895	7.1465	3	0	Median	1.0504	1.0136	5.1799	3	0	Plateau	0.79269	0.85446	21.686	3	1	Plateau	2993500000	1570800000	1422700000	733150000	354670000	378470000	827700000	471320000	356370000	816890000	396770000	420120000	615770000	348000000	267770000	1420	1741	1348	8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382	11311;11312;11313;11314;11315;11316;11317;11318;11319;11320;11321;11322;11323;11324	11321			14	
AENQVLAMR	0	Oxidation (M)	1046.5179	0.51787847	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	19.734	19.08	2	0.0055272	23982	160511_QHF_FH_JSI9i_1	78.113	60.077			1.1311	1.2109	26.38	3	1	Median	1.0856	0.87616	NaN	1	1	Median	1.2627	1.4777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1311	1.2109	NaN	1	0	Median	258820000	132380000	126440000	60788000	30696000	30093000	91003000	40523000	50481000	0	0	0	107030000	61161000	45871000	1421	1741	1348	8383;8384;8385	11325;11326	11326		1425	2	
AENQVLAMRK	1	Unmodified	1158.6179	0.61792687	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			20.096	19.276	3	0.022131	16518	160511_QHF_FH_JSI10i_2	34.695	21.74			1.5474	1.9066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5474	1.9066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71285000	24795000	46490000	0	0	0	71285000	24795000	46490000	0	0	0	0	0	0	1422	1741	1349	8386	11327	11327			1	
AENREPR	0	Acetyl (Protein N-term)	912.44134	0.44134271	568	O75817	POP7	Ribonuclease P protein subunit p20	yes	yes	0	1	0	1			By MS/MS		14	0							1					1		5.982	-1.6207	2	0.038495	2108	160513_QHF_FH_JSI11Kac_4	51.787	26.789			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1423	568	1350	8387	11328	11328			1	
AENSESLGTVPEHER	0	Acetyl (Protein N-term)	1695.77	0.77000665	3683	Q8TAG9	EXOC6	Exocyst complex component 6	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	32.922	32.2	2	4.8343E-07	28268	160511_QHF_FH_JSI9i_1	126.95	120.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1424	3683	1351	8388;8389;8390	11329;11330;11331	11331			3	
AENSHNAGQVDTR	0	Unmodified	1397.6284	0.62836821	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	5.1956	4.8092	2	9.5736E-07	2718	160511_QHF_FH_JSI11i_2	128.21	114.44			0.8427	0.84004	18.136	3	1	Plateau	1.395	1.1942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8427	0.84004	NaN	1	0	Median	0.84335	0.92763	NaN	1	0	Median	71440000	34132000	37308000	20460000	9277400	11182000	0	0	0	31218000	14728000	16490000	19763000	10127000	9636100	1425	3434	1352	8391;8392;8393	11332;11333;11334;11335	11335			4	
AENSQLTER	0	Unmodified	1046.4993	0.49925152	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	8.3925	8.1552	2	2.3536E-08	5984	160511_QHF_FH_JSI10i_1	157.96	114.96			0.96963	1.0929	10.047	4	3	Median	NaN	NaN	NaN	0	0	Median	0.91048	1.0764	10.544	2	2	Median	1.2728	1.2377	NaN	1	0	Median	0.96781	1.0299	NaN	1	1	Median	1096900000	532450000	564450000	0	0	0	513820000	284650000	229170000	294800000	118260000	176540000	288280000	129540000	158740000	1426	5213	1353	8394;8395;8396;8397	11336;11337;11338;11339;11340	11339			5	
AENSSLNLIGK	1	Unmodified	1144.6088	0.60880197	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.33	6.13	2						1			1		1	1	51.282	40.618	2	0.00036174	37110	160511_QHF_FH_JSI12i_1	82.261	39.662			0.95625	0.94454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95625	0.94454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6712700	3444700	3268000	0	0	0	0	0	0	6712700	3444700	3268000	0	0	0	1427	1586	1354	8398;8399;8400	11341;11342;11343	11341			3	
AENSVLTSTTGR	0	Acetyl (Protein N-term)	1276.6259	0.62590859	4789	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		50.03	40.711	2	0.0020026	16427	160513_QHF_FH_JSI11Kac_1	60.434	55.068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1428	4789	1355	8401	11344	11344			1	
AENTEGQGTPK	1	Unmodified	1130.5204	0.52038089	5038	Q9NVM6	DNAJC17	DnaJ homolog subfamily C member 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	5.6288	2.3529	2	1.965E-24	3019	160511_QHF_FH_JSI11i_1	183	92.343			0.91912	0.97725	12.154	7	0	Median	1.3069	1.0896	NaN	1	0	Median	0.83698	0.9695	1.1259	2	0	Median	1.0575	1.0266	20.495	2	0	Median	0.91595	0.97664	18.665	2	0	Median	404980000	211070000	193910000	86755000	37951000	48804000	94750000	53980000	40770000	111590000	60707000	50878000	111890000	58427000	53459000	1429	5038	1356	8402;8403;8404;8405;8406;8407;8408	11345;11346;11347;11348;11349;11350	11345			6	
AENVVEPGPPSAKRPK	2	Acetyl (K);Acetyl (Protein N-term)	1758.9264	0.92644771	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	1	0	2		By MS/MS		By MS/MS	13	0						2					1		1	51.95	42.719	2;3	0.00035053	23103	160513_QHF_FH_JSI12Kac_3	45.915	42.028			0.928	1.0396	20	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76169	0.90254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1306	1.1976	NaN	1	0	Median	21222000	12300000	8921300	0	0	0	12319000	7551700	4767800	0	0	0	8902100	4748600	4153500	1430	2285	1357	8409;8410	11351;11352	11351	2383		2	
AENYDIPSADR	0	Unmodified	1249.5575	0.55749468	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				2	3	2	3	32.499	26.108	2	1.2404E-05	26095	160511_QHF_FH_JSI12i_1	123.79	112.64			0.99971	0.97421	18.832	10	1	Median	1.3743	1.1268	16.44	2	0	Median	0.76021	0.86741	6.152	3	0	Median	0.99971	0.97421	0.70593	2	0	Median	0.90028	0.95738	26.357	3	1	Plateau	3858700000	1974500000	1884100000	716510000	317300000	399210000	1162900000	627660000	535250000	979400000	482840000	496560000	999840000	546720000	453130000	1431	1208	1358	8411;8412;8413;8414;8415;8416;8417;8418;8419;8420	11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365	11356			11	
AENYDIPSADRHK	1	Unmodified	1514.7114	0.71136956	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	17.06	17.08	2;3	4.5981E-05	14167	160511_QHF_FH_JSI11i_3	84.468	66.366			1.0026	0.97656	19.677	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2118	1.1223	NaN	1	0	Median	0.8295	0.84972	NaN	1	0	Median	139240000	76007000	63236000	0	0	0	0	0	0	72748000	34488000	38260000	66495000	41519000	24975000	1432	1208	1359	8421;8422;8423	11366;11367;11368;11369	11366			4	
AEPAKIEAFR	1	Acetyl (K)	1172.619	0.61897272	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	57.931	47.173	2	0.00056497	26578	160513_QHF_FH_JSI12Kac_4	90.15	61.976			0.37086	0.3667	52.527	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89253	1.0484	NaN	1	0	Median	0.37086	0.3667	NaN	1	0	Median	0.57389	0.62692	NaN	1	0	Median	43133000	26964000	16169000	0	0	0	12186000	6121700	6064400	17633000	12207000	5426000	13314000	8634900	4679100	1433	775	1360	8424;8425;8426	11370;11371;11372;11373;11374	11373	386		4	
AEPAKIEAFR	1	Unmodified	1130.6084	0.60840804	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	27.746	27.701	3	0.0045889	23159	160511_QHF_FH_JSI12i_3	38.875	26.661			1.1027	1.1134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1027	1.1134	NaN	1	0	Median	56973000	22614000	34359000	0	0	0	0	0	0	0	0	0	56973000	22614000	34359000	1434	775	1360	8427	11375	11375			1	
AEPASVAAESLAGSR	0	Acetyl (Protein N-term)	1456.7158	0.71578623	4928	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.9	3			2						1	1	1	2	66.156	63.255	2	2.3523E-30	57576	160511_QHF_FH_JSI12i_1	114.71	104.25			0.071193	0.072353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.071193	0.072353	NaN	1	0	Median	116040000	104050000	11992000	0	0	0	0	0	0	0	0	0	116040000	104050000	11992000	1435	4928	1361	8428;8429;8430;8431;8432	11376;11377;11378;11379;11380	11377			5	
AEPDESNAR	0	Unmodified	987.42575	0.42575222	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	5.6438	1.1705	2	3.7727E-11	3094	160511_QHF_FH_JSI10i_1	155.75	119.57			1.0888	1.0708	17.573	10	0	Median	1.2449	1.0209	NaN	1	0	Median	1.2448	1.4741	3.1741	3	0	Median	0.99032	1.0144	6.2834	3	0	Plateau	1.0075	1.0677	6.2076	3	0	Median	3517000000	1710700000	1806300000	707400000	309130000	398280000	777180000	348600000	428580000	941710000	488830000	452870000	1090700000	564090000	526610000	1436	1937	1362	8433;8434;8435;8436;8437;8438;8439;8440;8441;8442	11381;11382;11383;11384;11385;11386;11387;11388;11389;11390;11391;11392;11393;11394;11395;11396;11397;11398	11388			18	
AEPDSGPMRMTLYDLK	1	Unmodified	1822.8594	0.8593557	5846				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	35.487	34.882	3	0.0001168	31152	160511_QHF_FH_JSI10i_1	55.841	26.884	+		0.81672	0.8632	7.5956	8	0	Median	1.1326	0.94269	0	2	0	Median	0.7313	0.86287	0	2	0	Median	0.89584	0.86353	0	2	0	Median	0.74459	0.77163	0	2	0	Median	1018900000	531040000	487890000	195820000	78391000	117430000	289800000	154550000	135260000	295980000	166540000	129450000	237320000	131570000	105750000	1437	5846	1363	8443;8444;8445;8446;8447;8448;8449;8450	11399;11400;11401;11402;11403	11401			4	
AEPDYIEDDNPELIRPQK	1	Acetyl (Protein N-term)	2183.0382	0.038242585	4622	Q9H098	FAM107B	Protein FAM107B	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	67.41	66.803	2;3	4.0154E-68	59327	160511_QHF_FH_JSI9i_1	189.33	178.97			1.0114	0.99756	118.9	6	1	Median	1.0415	0.85605	10.362	2	0	Median	3.5765	4.2853	197.38	2	1	Median	1.0446	1.0146	NaN	1	0	Median	0.93459	0.98086	NaN	1	0	Median	418780000	202690000	216090000	146670000	72116000	74549000	118730000	47801000	70933000	75153000	38441000	36712000	78229000	44328000	33901000	1438	4622	1364	8451;8452;8453;8454;8455;8456;8457	11404;11405;11406;11407;11408;11409;11410;11411;11412;11413;11414;11415;11416	11414			13	
AEPEDHYFLLTEPPLNTPENR	0	Unmodified	2481.1812	0.18121843	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	78.64	77.952	3	3.4622E-18	68679	160511_QHF_FH_JSI11i_2	147.53	140.34			1.0075	1.0263	4.6579	5	0	Median	1.1689	0.9974	NaN	1	0	Median	0.87569	1.0358	1.3002	2	0	Median	1.0202	1.0253	NaN	1	0	Median	1.0075	1.1279	NaN	1	0	Median	756020000	372860000	383160000	149770000	75142000	74628000	250100000	130290000	119810000	217170000	99171000	118000000	138970000	68252000	70721000	1439	1939	1365	8458;8459;8460;8461;8462;8463	11417;11418;11419;11420;11421;11422;11423;11424;11425;11426	11424			10	
AEPEKTEGAAEAK	2	Acetyl (K)	1371.6518	0.65178899	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	22.394	15.34	2	0.014845	7433	160513_QHF_FH_JSI11Kac_2	51.927	34.901			0.42499	0.42877	51.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31798	0.29749	NaN	1	0	Median	0.56803	0.618	NaN	1	0	Median	7173500	4999700	2173800	0	0	0	0	0	0	4454400	3297200	1157200	2719200	1702500	1016600	1440	2101	1366	8464;8465	11427;11428	11427	2210		2	
AEPFIKWLK	2	Acetyl (K)	1172.6594	0.65938097	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.816	75.499	2	0.030391	41847	160513_QHF_FH_JSI11Kac_6	58.676	26.321			7.4999	6.9176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.4999	6.9176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60696000	8074700	52622000	0	0	0	0	0	0	60696000	8074700	52622000	0	0	0	1441	1839	1367	8466	11429	11429			1	
AEPHFLSILQHLLLVR	0	Unmodified	1885.0938	0.093787811	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	3.59			1						11	2	3	4	3	97.423	89.77	2;3;4	1.079E-104	47888	160513_QHF_FH_JSI12Kac_6	256.37	246.81			0.99873	1.0119	6.4548	12	0	Median	1.2078	1.0319	2.5537	2	0	Median	0.8107	0.96343	4.7339	3	0	Median	1.1552	1.0987	7.1148	4	0	Median	0.94454	0.9985	2.3152	3	0	Median	8822300000	4627600000	4194700000	1229000000	593210000	635740000	4284800000	2412200000	1872500000	2156500000	986470000	1170000000	1152100000	635680000	516440000	1442	432	1368	8467;8468;8469;8470;8471;8472;8473;8474;8475;8476;8477;8478	11430;11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444	11439			15	
AEPLETFPFDQSK	1	Unmodified	1507.7195	0.71947463	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		71.116	70.601	2	5.0155E-05	62663	160511_QHF_FH_JSI9i_1	77.541	55.909			1.0735	1.2777	22.146	3	3	Plateau	1.0594	0.85593	NaN	1	1	Median	1.0735	1.2777	NaN	1	1	Median	1.2624	1.2316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	231380000	113630000	117750000	68872000	33179000	35694000	76134000	42782000	33352000	86374000	37674000	48700000	0	0	0	1443	5743	1369	8479;8480;8481;8482	11445;11446;11447;11448;11449	11449			5	
AEPLNSVAH	0	Unmodified	936.46649	0.46649483	725	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	22.318	18.812	2	4.4662E-06	16364	160511_QHF_FH_JSI12i_1	119.21	76.296			0.82704	0.86804	5.4961	7	2	Median	1.0784	0.87566	NaN	1	0	Median	0.71749	0.85331	4.1147	2	1	Median	0.89721	0.88341	2.7245	2	0	Median	0.76772	0.81417	9.0605	2	1	Median	1014800000	545400000	469420000	226660000	101590000	125070000	298420000	178680000	119740000	252620000	133150000	119470000	237120000	131980000	105140000	1444	725	1370	8483;8484;8485;8486;8487;8488;8489;8490	11450;11451;11452;11453;11454;11455;11456;11457;11458;11459;11460;11461;11462	11452			13	
AEPMPSASSAPPASSLYSSPVNSSAPLAEDIDPELAR	0	Unmodified	3710.7622	0.76215066	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				96.839	96.376	3	4.0353E-09	85279	160511_QHF_FH_JSI9i_1	57.417	52.655			1.2738	1.0397	NaN	1	1	Median	1.2738	1.0397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10078000	2440200	7638200	10078000	2440200	7638200	0	0	0	0	0	0	0	0	0	1445	225	1371	8491	11463;11464	11463			2	
AEPMQWASLELPAAK	1	Unmodified	1640.8232	0.82322819	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.682	7	7	2							4	4	4	4	84.56	83.945	2;3	6.4639E-10	72507	160511_QHF_FH_JSI12i_2	176.51	164.64			0.95857	0.99659	21.995	15	1	Median	1.0291	0.85032	20.66	3	0	Plateau	0.97813	1.1975	9.192	4	0	Median	0.99012	0.98787	7.1658	4	1	Median	0.9102	0.98608	8.9037	4	0	Median	1430400000	743560000	686880000	158790000	80719000	78067000	430470000	231080000	199390000	462220000	231320000	230900000	378960000	200450000	178520000	1446	5296	1372	8492;8493;8494;8495;8496;8497;8498;8499;8500;8501;8502;8503;8504;8505;8506;8507	11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475;11476;11477;11478;11479;11480;11481;11482;11483;11484;11485;11486;11487	11469			22	
AEPPKAPEQEQAAPGPAAGGEAPK	2	Unmodified	2297.1288	0.12878893	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.57	12	1	1			7				4	6	6	5	30.955	26.837	2;3;4	6.0657E-63	24412	160511_QHF_FH_JSI9i_1	172.8	164.2			0.96837	1.0045	14.783	19	2	Median	1.2607	1.0226	19.548	4	1	Median	0.78739	0.94666	10.614	5	0	Median	0.93911	0.93031	10.527	5	1	Median	1.0113	1.0793	5.7324	5	0	Median	10413000000	4996700000	5416300000	2353000000	1043600000	1309400000	2900200000	1555800000	1344300000	2460500000	1226100000	1234300000	2699400000	1171100000	1528300000	1447	2101	1373	8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518;8519;8520;8521;8522;8523;8524;8525;8526;8527;8528	11488;11489;11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503;11504;11505;11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520;11521;11522;11523;11524	11514			37	
AEPPLNASASDQGEK	1	Unmodified	1512.7056	0.70561548	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.126	22.978	2	0.0030505	19979	160511_QHF_FH_JSI11i_1	65.179	30.793			0.7366	0.72169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7366	0.72169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28233000	16917000	11316000	0	0	0	0	0	0	28233000	16917000	11316000	0	0	0	1448	5633	1374	8529	11525	11525			1	
AEPPQAMNALMR	0	Unmodified	1327.6377	0.63767603	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	3	2	52.139	51.315	2	3.2264E-12	46635	160511_QHF_FH_JSI12i_1	155.07	132.33			0.88183	0.96947	57.804	8	4	Median	1.2879	1.0719	12.931	2	1	Median	0.75854	0.9123	13.046	2	1	Median	0.8349	0.8303	20.635	2	1	Median	1.6508	1.7854	125.06	2	1	Median	3490400000	1497800000	1992700000	686070000	285700000	400370000	645500000	369470000	276040000	783950000	420470000	363480000	1374900000	422110000	952780000	1449	2325	1375	8530;8531;8532;8533;8534;8535;8536;8537;8538;8539	11526;11527;11528;11529;11530;11531;11532	11527			7	
AEPPQCTSLAWSADGQTLFAGYTDNLVR	0	Unmodified	3067.4345	0.43454936	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	101.13	100.99	3	1.6727E-34	91725	160511_QHF_FH_JSI11i_1	151.12	144.9			1.0586	1.0677	12.297	3	2	Median	1.3058	1.0677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89897	0.88473	NaN	1	1	Median	1.0586	1.115	NaN	1	0	Median	453600000	196770000	256830000	52900000	18924000	33976000	0	0	0	175110000	64917000	110190000	225600000	112930000	112670000	1450	2061	1376	8540;8541;8542	11533;11534;11535	11533			2	
AEPSAPESK	1	Acetyl (Protein N-term)	956.44509	0.44509068	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	20.156	12.769	2	0.042177	6228	160513_QHF_FH_JSI11Kac_1	30.254	30.254			0.93662	0.94417	16.863	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1026	1.0637	NaN	1	0	Median	0.79559	0.83804	NaN	1	0	Median	8120300	4066800	4053500	0	0	0	0	0	0	4280900	1831300	2449600	3839400	2235500	1603900	1451	3708	1378	8543;8544;8545	11536;11537;11538;11539	11537			3	
AEPSAPESKHK	2	Acetyl (K);Acetyl (Protein N-term)	1263.6095	0.60953025	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	1	1	0	1			By MS/MS		13	0						1						1		22.931	15.405	2	0.0060408	9959	160513_QHF_FH_JSI11Kac_3	52.579	48.128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1452	3708	1379	8546	11540	11540	2915		1	
AEPSEVDMNSPK	1	Unmodified	1302.5762	0.57618121	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.44	23.801	2	1.3996E-10	20937	160511_QHF_FH_JSI10i_1	128.81	81.624			1.9976	1.8301	52.62	3	3	Plateau	2.4727	2.0207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76074	0.72997	NaN	1	1	Median	1.4683	1.5294	NaN	1	1	Median	151520000	55626000	95897000	56181000	14676000	41505000	0	0	0	31852000	16005000	15847000	63489000	24944000	38545000	1453	4940	1380	8547;8548;8549;8550	11541;11542;11543;11544	11543			4	
AEPSGAETRPPIR	0	Acetyl (Protein N-term)	1421.7263	0.72629134	4964	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.231	29.633	2	1.1192E-06	26198	160511_QHF_FH_JSI10i_1	123.79	103.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1454	4964	1381	8551;8552;8553;8554	11545;11546;11547;11548	11547			4	
AEPTVCSFLTK	1	Acetyl (Protein N-term)	1293.6275	0.6274885	4104	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		79.716	79.375	2	0.0045537	72233	160511_QHF_FH_JSI11i_1	50.284	33.613			0.32762	0.31305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32762	0.31305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10720000	7736100	2984400	0	0	0	0	0	0	10720000	7736100	2984400	0	0	0	1455	4104	1382	8555	11549	11549			1	
AEPVEVVAPR	0	Unmodified	1065.5819	0.58185893	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.14	4	1				3	3			1	4	3	3	39.975	34.448	2	3.2403E-19	31208	160511_QHF_FH_JSI12i_1	178.94	165.27			1.1311	1.0594	14.88	11	1	Plateau	1.2873	1.0622	NaN	1	0	Median	0.78793	0.94665	12.238	4	0	Median	1.0686	1.0332	22.767	3	1	Plateau	0.98901	1.0566	10.672	3	0	Plateau	5528000000	2697900000	2830100000	1541400000	670040000	871390000	1338300000	659920000	678370000	1201700000	596330000	605340000	1446600000	771570000	675000000	1456	939	1383	8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566	11550;11551;11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562;11563;11564;11565;11566;11567	11552			18	
AEPYAADEGSGEGHK	1	Unmodified	1516.643	0.64301522	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	10.898	10.514	2;3	1.4961E-05	8454	160511_QHF_FH_JSI12i_1	85.288	67.424			0.76505	0.78866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76505	0.78866	NaN	1	0	Median	95848000	54118000	41730000	0	0	0	0	0	0	0	0	0	95848000	54118000	41730000	1457	4152	1384	8567;8568	11568;11569	11569			2	
AEQATVTSEFESYK	1	Unmodified	1588.7257	0.72568222	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	49.035	48.266	2	0.00011379	43896	160511_QHF_FH_JSI12i_1	105.17	81.935			0.97857	1.0062	7.4503	3	2	Plateau	1.1318	0.9318	NaN	1	1	Median	0.73822	0.86696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97857	1.0062	NaN	1	0	Median	98459000	51882000	46577000	35989000	13955000	22034000	28059000	21436000	6622900	0	0	0	34411000	16491000	17920000	1458	3423	1385	8569;8570;8571	11570;11571;11572	11570			3	
AEQDVENDLLDYDEEEEPQAPQESTPAPPKK	2	Acetyl (Protein N-term)	3552.5904	0.59037711	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	78.212	77.865	3	1.2794E-22	70588	160511_QHF_FH_JSI10i_1	68.934	68.496			1.032	1.1387	11.302	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0431	1.2335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.0513	NaN	1	0	Median	121530000	72495000	49036000	0	0	0	73726000	43607000	30119000	0	0	0	47805000	28888000	18917000	1459	97	1386	8572;8573	11573;11574;11575	11574			3	
AEQEAEEPRK	1	Unmodified	1185.5626	0.56258006	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	1.4	0.49	6	4									4	3	3	5.4052	5.1148	2;3	1.9283E-07	3125	160511_QHF_FH_JSI12i_1	117.7	54.133			1.029	1.0988	15.777	8	0	Median	NaN	NaN	NaN	0	0	Median	0.92429	1.0976	5.5108	2	0	Median	1.1006	1.0579	20.453	3	0	Median	0.96199	1.0063	16.635	3	0	Plateau	946350000	480210000	466140000	0	0	0	239340000	123740000	115600000	339450000	174730000	164710000	367570000	181740000	185820000	1460	4761	1387	8574;8575;8576;8577;8578;8579;8580;8581;8582;8583	11576;11577;11578;11579;11580;11581	11577			6	
AEQEEEFISNTLFK	1	Unmodified	1683.7992	0.79918151	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	79.155	78.684	2;3	1.5616E-40	71563	160511_QHF_FH_JSI11i_1	208.95	151.42			0.9632	0.84106	19.787	8	1	Median	0.9632	0.79735	0.4494	2	0	Median	0.72575	0.84106	5.4217	2	0	Median	0.96632	0.91875	19.945	2	0	Median	1.1761	1.2112	15.444	2	1	Median	411280000	199890000	211390000	86799000	41815000	44985000	105960000	57145000	48818000	97178000	50032000	47147000	121340000	50900000	70441000	1461	2727	1388	8584;8585;8586;8587;8588;8589;8590;8591	11582;11583;11584;11585;11586;11587;11588;11589;11590;11591;11592;11593;11594;11595	11584			14	
AEQEEEGLPLPLANIK	1	Unmodified	1749.9149	0.91487997	3581	Q8NAF0	ZNF579	Zinc finger protein 579	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	83.188	82.825	2	0.0012271	75524	160511_QHF_FH_JSI12i_1	59.898	45.663			4.0113	3.7306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0113	3.7306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67929000	12985000	54944000	0	0	0	0	0	0	67929000	12985000	54944000	0	0	0	1462	3581	1389	8592;8593;8594	11596;11597;11598	11597			3	
AEQEEYVQEGIR	0	Unmodified	1449.6736	0.67358707	2332	Q12965;O00160	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.584	30.984	2	1.3593E-41	27665	160511_QHF_FH_JSI11i_1	201.75	153.46			0.93365	0.98422	5.3226	4	0	Median	1.2923	1.0522	NaN	1	0	Median	0.86606	1.0068	NaN	1	0	Median	0.94423	0.93134	NaN	1	0	Median	0.92319	0.96219	NaN	1	0	Median	657570000	331810000	325760000	134500000	52042000	82460000	149380000	80294000	69082000	178390000	90577000	87814000	195300000	108900000	86403000	1463	2332	1390	8595;8596;8597;8598	11599;11600;11601;11602;11603;11604;11605	11599			7	
AEQEGGMQFWVSSESK	1	Unmodified	1798.7832	0.78321387	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	60.725	60.212	2	1.0941E-07	54549	160511_QHF_FH_JSI11i_1	132.97	94.092			1.9988	1.8847	47.951	5	5	Median	NaN	NaN	NaN	0	0	Median	2.0305	2.3525	NaN	1	1	Median	2.6402	2.5245	41.335	2	2	Median	1.1411	1.1685	27.611	2	2	Median	168590000	61016000	107570000	0	0	0	39127000	12463000	26663000	63979000	20168000	43811000	65481000	28385000	37096000	1464	3173	1391	8599;8600;8601;8602;8603	11606;11607;11608;11609;11610;11611;11612	11607			7	
AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK	2	Acetyl (Protein N-term)	3605.6758	0.6757785	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									4	2	2	2	75.722	75.193	3;4	7.3139E-140	68520	160511_QHF_FH_JSI11i_1	232.02	226.77			0.95009	0.96481	78.669	8	2	Median	1.1736	0.96481	3.6805	2	0	Median	0.94108	1.1207	0.87269	2	0	Median	0.4079	0.39318	118.33	2	1	Median	0.44075	0.46593	114.16	2	1	Median	6684000000	4004600000	2679400000	1408200000	601190000	807030000	2254500000	1159500000	1094900000	1560500000	1136500000	424020000	1460800000	1107400000	353370000	1465	1773	1392	8604;8605;8606;8607;8608;8609;8610;8611;8612;8613	11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625;11626;11627;11628;11629;11630;11631;11632;11633;11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645	11615			33	
AEQFYCGDTEGK	1	Unmodified	1403.5663	0.5663448	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.072	24.533	2	3.5592E-05	21759	160511_QHF_FH_JSI12i_1	104.79	100.18			1.8659	1.9447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8659	1.9447	NaN	1	0	Median	46104000	13336000	32768000	0	0	0	0	0	0	0	0	0	46104000	13336000	32768000	1466	2185	1393	8614	11646	11646			1	
AEQINQAAGEASAVLAK	1	Unmodified	1669.8635	0.8635131	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	3	2	58.327	57.621	2;3	1.4626E-30	52194	160511_QHF_FH_JSI10i_1	232.5	179.71			0.88751	0.88921	17.289	9	2	Median	1.2525	1.0093	29.162	3	2	Median	0.73053	0.86729	3.5302	2	0	Median	0.91383	0.88285	17.913	2	0	Median	0.84204	0.89729	7.496	2	0	Median	1984500000	1040400000	944040000	693650000	316680000	376970000	353470000	193740000	159720000	427140000	237870000	189260000	510230000	292130000	218090000	1467	5357	1394	8615;8616;8617;8618;8619;8620;8621;8622;8623;8624	11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664	11658			18	
AEQIVPLSAASFER	0	Unmodified	1516.7886	0.78855725	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			70.308	70.05	2	0.014808	63492	160511_QHF_FH_JSI10i_1	43.544	16.871			0.52114	0.59661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52114	0.59661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13965000	8213000	5751800	0	0	0	13965000	8213000	5751800	0	0	0	0	0	0	1468	2434	1395	8625	11665	11665			1	
AEQLAAEAERDQPLR	0	Unmodified	1695.854	0.85401105	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	35.408	35.045	3	7.158E-05	30731	160511_QHF_FH_JSI10i_2	71.316	52.902			1.1421	1.3848	28.172	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.3848	NaN	1	0	Median	0.96731	0.90347	NaN	1	1	Median	1.4372	1.5378	NaN	1	0	Median	137310000	77344000	59962000	0	0	0	53722000	27542000	26180000	35603000	20961000	14642000	47981000	28840000	19141000	1469	4863	1396	8626;8627;8628	11666;11667;11668;11669;11670	11668			5	
AEQLGAEGNVDESQK	1	Unmodified	1573.722	0.72199382	4910	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.2	4.4	4				1					1	1	2	1	22.093	20.203	2	3.6898E-52	17365	160511_QHF_FH_JSI11i_1	221.86	210.64			1.0085	0.93324	32.955	5	1	Median	1.0085	0.82285	NaN	1	0	Median	0.80169	0.93324	NaN	1	0	Median	0.74395	0.72978	58.125	2	1	Median	1.0108	1.0398	NaN	1	0	Median	452040000	241870000	210170000	125370000	68480000	56890000	105120000	60768000	44353000	119660000	60593000	59070000	101890000	52031000	49858000	1470	4910	1397	8629;8630;8631;8632;8633	11671;11672;11673;11674;11675;11676	11671			6	
AEQLSQENEK	1	Unmodified	1174.5466	0.54659564	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.5327	8.1833	2	2.5634E-09	6048	160511_QHF_FH_JSI10i_1	128.27	58.316			0.73178	0.77827	72.49	4	1	Median	0.22408	0.18731	NaN	1	1	Median	0.66026	0.76726	NaN	1	0	Median	0.81824	0.78943	NaN	1	0	Median	0.81104	0.83577	NaN	1	0	Median	481000000	330860000	150130000	207650000	170930000	36719000	115250000	69926000	45327000	77594000	45425000	32169000	80498000	44579000	35919000	1471	2911	1398	8634;8635;8636;8637	11677;11678;11679;11680;11681	11679			5	
AEQSLHDLQER	0	Unmodified	1324.6371	0.63714198	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		4								1			3	18.404	17.369	2;3	0.00032153	14558	160511_QHF_FH_JSI9i_2	83.397	38.236			1.3795	1.5625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3795	1.5625	NaN	1	0	Median	52124000	24874000	27250000	0	0	0	0	0	0	0	0	0	52124000	24874000	27250000	1472	2446	1399	8638;8639;8640;8641	11682;11683;11684;11685	11685			3	
AEQSQQEAAK	1	Unmodified	1088.5098	0.5098162	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	2.8062	2.5534	2	2.3532E-09	1405	160511_QHF_FH_JSI10i_1	129.38	82.316			0.96772	1.0195	44.109	4	1	Median	NaN	NaN	NaN	0	0	Median	0.74362	0.87732	NaN	1	0	Median	1.2593	1.1848	NaN	1	0	Median	1.0473	1.0995	72.996	2	1	Median	154490000	81468000	73022000	0	0	0	46154000	26103000	20051000	50830000	27361000	23468000	57506000	28003000	29503000	1473	1360	1400	8642;8643;8644;8645	11686;11687;11688	11688			3	
AEQVALSR	0	Acetyl (Protein N-term)	914.48214	0.48214489	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.26	4			2	2					1	1	3	3	38.29	33.543	2	0.00014258	30530	160511_QHF_FH_JSI10i_1	127.46	90.303			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1474	1000	1401	8646;8647;8648;8649;8650;8651;8652;8653	11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699	11694			11	
AEQVDPNFYSK	1	Unmodified	1296.5986	0.59863121	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	41.52	37.248	2	1.618E-07	33313	160511_QHF_FH_JSI10i_1	123.51	86.82			1.005	1.06	29.722	7	3	Median	0.95666	0.78954	NaN	1	1	Median	1.0202	1.1828	37.508	2	1	Median	0.90451	0.8872	40.393	2	1	Median	1.1063	1.1948	16.933	2	0	Median	803930000	470210000	333710000	140500000	85915000	54582000	193710000	111520000	82190000	248280000	151990000	96294000	221430000	120780000	100650000	1475	4024	1402	8654;8655;8656;8657;8658;8659;8660	11700;11701;11702;11703;11704;11705;11706;11707;11708	11705			9	
AEQVIFVR	0	Unmodified	960.53927	0.53926584	3872	Q92692	PVRL2	Nectin-2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				42.026	40.976	2	0.0067619	35843	160511_QHF_FH_JSI9i_2	70.69	40.078			1.3118	1.1127	NaN	1	1	Median	1.3118	1.1127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29613000	14229000	15384000	29613000	14229000	15384000	0	0	0	0	0	0	0	0	0	1476	3872	1403	8661	11709	11709			1	
AEQWNVNYVETSAK	1	Unmodified	1637.7686	0.76855009	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		52.311	51.505	2	0.0019094	46655	160511_QHF_FH_JSI11i_1	73.881	39.16			1.5767	1.4326	4.5158	2	2	Median	1.7514	1.4791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4194	1.3876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64916000	20815000	44102000	36630000	10863000	25767000	0	0	0	28287000	9951900	18335000	0	0	0	1477	993	1404	8662;8663	11710;11711	11710			2	
AERENADIIR	0	Unmodified	1185.6102	0.61019895	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	5.2	4.92		1	3					1			1	3	1	13.569	13.43	2;3	0.00055243	10815	160511_QHF_FH_JSI11i_3	66.663	41.277			0.94271	0.99249	13.404	4	1	Median	NaN	NaN	NaN	0	0	Median	0.83771	1.0384	NaN	1	0	Median	1.068	0.99249	0.23212	2	0	Median	0.76966	0.77328	NaN	1	1	Median	360130000	184580000	175550000	0	0	0	99265000	56620000	42645000	182110000	92564000	89547000	78753000	35393000	43359000	1478	2957;5035	1405	8664;8665;8666;8667;8668	11712;11713;11714;11715;11716;11717	11713			6	
AERGELDLTGAK	1	Acetyl (Protein N-term)	1300.6623	0.6622941	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		40.507	40.184	2	0.00018258	36221	160511_QHF_FH_JSI11i_1	81.278	62.838			1.006	0.97449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.006	0.97449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	277060000	177300000	99769000	0	0	0	0	0	0	277060000	177300000	99769000	0	0	0	1479	1045	1406	8669	11718	11718			1	
AERPDVDEK	1	Unmodified	1057.504	0.50400254	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1							1	2	2	2	7.8742	7.6223	2	3.1502E-05	5270	160511_QHF_FH_JSI11i_2	118.71	68.585			0.82074	0.93041	13.593	7	0	Median	1.3828	1.17	NaN	1	0	Median	0.75701	0.9193	13.696	2	0	Median	0.97157	0.96092	4.5633	2	0	Median	0.78713	0.81644	3.1965	2	0	Median	494640000	265230000	229400000	52553000	23871000	28682000	128900000	77825000	51078000	198720000	104960000	93763000	114460000	58577000	55882000	1480	2517	1407	8670;8671;8672;8673;8674;8675;8676	11719;11720;11721;11722;11723;11724;11725;11726;11727	11724			9	
AERPEDLNLPNAVITR	0	Acetyl (Protein N-term)	1848.9694	0.96937516	4952	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	70.885	70.325	2;3	9.3956E-08	62363	160511_QHF_FH_JSI9i_1	147.56	116.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1481	4952	1408	8677;8678;8679;8680;8681;8682;8683;8684;8685	11728;11729;11730;11731;11732;11733;11734;11735;11736;11737	11735			10	
AESALAQQAK	1	Unmodified	1015.5298	0.52982336	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	12.297	9.5757	2	1.4679E-05	7986	160511_QHF_FH_JSI9i_1	112.41	67.964			0.60069	0.58541	20.433	6	4	Median	0.74013	0.60122	NaN	1	1	Median	0.60982	0.72028	33.089	2	1	Median	0.60069	0.58514	12.992	2	1	Median	0.49859	0.52161	NaN	1	1	Median	755650000	491200000	264450000	226260000	129040000	97224000	195450000	132280000	63176000	170710000	118270000	52444000	163220000	111610000	51610000	1482	4300	1409	8686;8687;8688;8689;8690;8691	11738;11739;11740;11741;11742	11742			5	
AESAPLPVSADDTPEVLNR	0	Unmodified	1979.98	0.97999942	715	O95674	CDS2	Phosphatidate cytidylyltransferase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		67.324	66.9	2	3.7933E-05	60840	160511_QHF_FH_JSI11i_1	80.3	58.743			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1483	715	1410	8692	11743	11743			1	
AESDWDTVTVLRK	1	Acetyl (Protein N-term)	1560.7784	0.77838649	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.48	5	6					1			4	3	2	3	69.801	68.168	2	2.1699E-66	62287	160511_QHF_FH_JSI12i_1	134.68	123.85			0.9811	1.056	161.73	11	7	Median	1.3903	1.1632	234.85	4	4	Median	0.99771	1.182	65.371	3	1	Median	0.91659	0.9121	20.719	2	1	Median	0.23675	0.25471	198.67	2	1	Median	1741700000	865160000	876520000	355180000	158310000	196880000	523310000	260100000	263210000	383150000	198100000	185050000	480030000	248650000	231380000	1484	455	1411	8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704	11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758	11748			15	
AESEEGPDVLR	0	Unmodified	1200.5622	0.5622457	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	34.868	26.403	2	0.0018594	15301	160513_QHF_FH_JSI12Kac_3	74.376	55.105			1.3095	1.4237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3095	1.4237	NaN	1	0	Median	3430800	1442900	1987800	0	0	0	0	0	0	0	0	0	3430800	1442900	1987800	1485	2675	1412	8705	11759	11759			1	
AESEEMETSQAGSK	1	Oxidation (M)	1498.6093	0.60933183	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.97	9			1	3					4	2	4	3	7.8545	5.2732	2	1.2792E-65	8281	160511_QHF_FH_JSI12i_1	234.63	214.43			0.96812	0.97302	78.533	13	6	Median	1.2313	1.0259	135.87	4	2	Median	0.66491	0.77061	31.856	2	1	Median	1.0107	0.97163	56.236	4	2	Median	0.93124	0.97731	38.83	3	1	Median	841420000	377630000	463780000	303610000	107910000	195700000	73874000	45020000	28854000	257460000	129260000	128210000	206480000	95449000	111030000	1486	1417	1413	8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718	11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777	11765		1072	18	
AESEEMETSQAGSK	1	Unmodified	1482.6144	0.61441721	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	8				6					2	4	4	4	12.43	8.8606	2;3	7.6906E-81	8278	160511_QHF_FH_JSI12i_1	281.99	271.47			0.95472	1.0489	20.912	13	1	Median	1.2733	1.0376	1.5424	2	0	Median	0.91144	1.0746	14.625	4	0	Median	0.91731	0.89452	14.782	3	0	Plateau	0.94486	0.98913	33.936	4	1	Median	3816300000	1834300000	1982000000	1128400000	502430000	625990000	1212800000	638160000	574670000	805850000	371770000	434080000	669210000	321990000	347220000	1487	1417	1413	8719;8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732	11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800	11784			23	
AESFFQTK	1	Unmodified	956.46035	0.46034682	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.67	0.471	1	2								1	1		1	33.921	33.063	2	0.0031292	28873	160511_QHF_FH_JSI10i_2	81.296	57.098			0.93315	0.79831	64.996	3	3	Median	0.93315	0.79831	NaN	1	1	Median	0.45549	0.55053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9123	1.9498	NaN	1	1	Median	500070000	324430000	175640000	176500000	102020000	74476000	239430000	192040000	47392000	0	0	0	84144000	30376000	53768000	1488	1040	1414	8733;8734;8735	11801;11802;11803	11803			3	
AESGALIEAAK	1	Unmodified	1058.5608	0.56078914	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.75	28.187	2	0.00035502	25206	160511_QHF_FH_JSI12i_1	73.885	41.951			1.3987	1.44	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3987	1.44	NaN	1	0	Median	70690000	22326000	48364000	0	0	0	0	0	0	0	0	0	70690000	22326000	48364000	1489	4802	1415	8736	11804;11805	11804			2	
AESGESGGPPGSQDSAAGAEGAGAPAAAASAEPK	1	Acetyl (Protein N-term)	2951.3017	0.30168051	5427	Q9UMX0	UBQLN1	Ubiquilin-1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			46.058	45.632	3	4.8661E-16	41048	160511_QHF_FH_JSI10i_1	40.146	38.311			1.0208	1.1873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0208	1.1873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149210000	67840000	81372000	0	0	0	149210000	67840000	81372000	0	0	0	0	0	0	1490	5427	1416	8737	11806;11807	11806			2	
AESGPDLR	0	Unmodified	843.40865	0.4086456	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.918	10.682	2	0.0053228	8468	160511_QHF_FH_JSI10i_1	63.565	25.432			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1491	1085	1417	8738	11808	11808			1	
AESGPDLRYEVTSGGGGTSR	0	Unmodified	1994.9294	0.92936084	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	35.607	35.244	3	5.7381E-05	30901	160511_QHF_FH_JSI10i_2	44.382	31.152			1.4192	1.5879	9.9065	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.2982	1.5879	NaN	1	0	Median	1.4192	1.3161	NaN	1	1	Median	1.459	1.5271	NaN	1	1	Median	70095000	32089000	38006000	0	0	0	38879000	19497000	19382000	13288000	4949400	8339100	17928000	7642700	10285000	1492	1085	1418	8739;8740;8741;8742	11809;11810;11811;11812	11811			4	
AESIIIR	0	Acetyl (Protein N-term)	842.48617	0.48616764	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.86	4.69	3			2	5	3	1			3	5	3	3	60.19	52.76	2	2.3637E-09	2060	160513_QHF_FH_JSI9Kac_2	139.92	97.198			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1493	3686	1419	8743;8744;8745;8746;8747;8748;8749;8750;8751;8752;8753;8754;8755;8756	11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829	11829			17	
AESLQQEVEALK	1	Unmodified	1343.6933	0.69325988	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.859	60.467	2	6.2482E-06	54678	160511_QHF_FH_JSI10i_1	98.898	74.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1494	2516	1420	8757	11830	11830			1	
AESLQVTR	0	Unmodified	902.48214	0.48214489	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	15.994	15.723	2	0.0028711	13137	160511_QHF_FH_JSI11i_1	76.825	38.851			0.85807	0.83641	2.5633	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76757	0.87973	NaN	1	0	Median	0.85807	0.83641	NaN	1	0	Median	0.81109	0.85124	NaN	1	0	Median	368220000	201600000	166630000	0	0	0	120000000	60231000	59772000	126330000	66312000	60020000	121890000	75054000	46836000	1495	1586	1421	8758;8759;8760	11831;11832	11831			2	
AESPWTIFLFLSNLR	0	Unmodified	1792.9512	0.9512059	4713	Q9H497	TOR3A	Torsin-3A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.81	91.388	2	0.037998	52513	160513_QHF_FH_JSI11Kac_6	55.452	33.895			1.4695	1.4075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4695	1.4075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29747000	12991000	16756000	0	0	0	0	0	0	29747000	12991000	16756000	0	0	0	1496	4713	1422	8761	11833	11833			0	
AESQLLECK	1	Unmodified	1076.5172	0.51720977	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.396	23.869	2	0.0050055	21120	160511_QHF_FH_JSI12i_1	65.157	33.315			3.6784	3.8722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6784	3.8722	NaN	1	1	Median	21633000	4933600	16699000	0	0	0	0	0	0	0	0	0	21633000	4933600	16699000	1497	1016	1423	8762	11834	11834			1	
AESQNTFEETELELKK	2	Unmodified	1894.916	0.91600218	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	1.8	0.4	1	4								1	1	2	1	50.755	49.887	3	0.0013173	43702	160511_QHF_FH_JSI9i_2	73.833	53.31			0.99533	0.98681	11.11	5	0	Median	1.0076	0.85824	NaN	1	0	Median	0.84534	1.0314	NaN	1	0	Median	0.95452	0.9444	6.2129	2	0	Median	1.0118	1.1389	NaN	1	0	Median	646350000	317940000	328410000	112690000	44383000	68306000	84033000	51289000	32745000	299520000	155890000	143630000	150100000	66378000	83726000	1498	2902	1424	8763;8764;8765;8766;8767	11835;11836	11836			0	
AESSESFTMASSPAQR	0	Acetyl (Protein N-term)	1726.7468	0.74682837	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.282	49.604	2	9.361E-59	44967	160511_QHF_FH_JSI12i_1	264.84	260.82			0.26274	0.216	NaN	1	0	Median	0.26274	0.216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110190000	89810000	20377000	110190000	89810000	20377000	0	0	0	0	0	0	0	0	0	1499	1674	1425	8768;8769;8770;8771	11837;11838;11839;11840;11841;11842	11839			6	
AESSFSEEEEEK	1	Unmodified	1399.5627	0.56269921	5724	Q9Y6G5	COMMD10	COMM domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	17.43	16.947	2	7.1268E-23	14119	160511_QHF_FH_JSI9i_1	176.95	158.64			1.191	1.08	19.978	4	0	Median	1.2586	1.0354	NaN	1	0	Median	1.3604	1.584	NaN	1	0	Median	1.127	1.0665	NaN	1	0	Median	1.0487	1.0936	NaN	1	0	Median	194770000	84210000	110560000	46939000	19959000	26980000	50637000	20521000	30116000	51120000	24974000	26145000	46070000	18755000	27314000	1500	5724	1426	8772;8773;8774;8775	11843;11844;11845	11844			3	
AESSQTCHSEQGDK	1	Unmodified	1562.6267	0.62671323	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	3	1	4.2864	3.9485	2;3	4.438E-07	2021	160511_QHF_FH_JSI9i_1	150.06	130.74			1.3536	1.1262	84.706	5	1	Median	1.3719	1.1499	2.9464	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77936	0.74493	162.83	2	1	Median	0.73454	0.76398	NaN	1	0	Median	253830000	137130000	116700000	110110000	50631000	59475000	0	0	0	53857000	27814000	26043000	89867000	58683000	31184000	1501	1579	1427	8776;8777;8778;8779;8780;8781;8782	11846;11847;11848;11849;11850;11851;11852;11853;11854	11853			9	
AESSSGGGTVPSSAGILEQGPSPGDGSPPKPK	2	Unmodified	2934.4207	0.42067343	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				51.348	50.139	3	0.0028088	44580	160511_QHF_FH_JSI9i_1	31.923	28.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1502	3029	1428	8783	11855	11855			1	
AESTANAGQSDNR	0	Unmodified	1319.5702	0.57018463	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	4.811	4.4693	2	2.822E-05	2416	160511_QHF_FH_JSI12i_1	171.92	152.14			1.246	1.2865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.246	1.2865	NaN	1	1	Median	34994000	16349000	18645000	0	0	0	0	0	0	0	0	0	34994000	16349000	18645000	1503	489	1429	8784	11856	11856			1	
AESTFLFLVGQDDHNWK	1	Unmodified	2005.9534	0.95339074	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS		By matching	By MS/MS	7.33	6.13			2						1	1		1	1	85.708	82.792	3	1.392E-05	75544	160511_QHF_FH_JSI12i_3	83.966	78.307			1.0026	0.91986	20.669	3	1	Median	0.92747	0.7948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0026	0.91986	NaN	1	0	Median	1.1425	1.1952	NaN	1	0	Median	165670000	84496000	81173000	88337000	47062000	41275000	0	0	0	28411000	16217000	12194000	48921000	21217000	27704000	1504	3313	1430	8785;8786;8787	11857;11858;11859	11859			3	
AESTLQNSSSAVHTESNK	1	Unmodified	1888.8763	0.87626263	4797	Q9H967	WDR76	WD repeat-containing protein 76	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.482	14.355	3	4.0822E-06	11843	160511_QHF_FH_JSI11i_1	86.213	77.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1505	4797	1431	8788	11860	11860			1	
AESTPEIAEQRGER	0	Unmodified	1571.754	0.75396265	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.715	15.715	2	0.0093435	12942	160511_QHF_FH_JSI11i_3	63.283	45.419			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1506	2349	1432	8789	11861	11861			1	
AESVQGGETR	0	Unmodified	1032.4836	0.48360145	5252	Q9UBS8	RNF14	E3 ubiquitin-protein ligase RNF14	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.5226	5.4175	2	0.00015286	3225	160511_QHF_FH_JSI11i_1	95.358	70.726			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1507	5252	1433	8790	11862	11862			1	
AETAAGVGR	0	Acetyl (Protein N-term)	872.43519	0.4351947	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		23.922	16.497	2	0.0015944	7512	160513_QHF_FH_JSI11Kac_1	62.464	44.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1508	2304	1434	8791	11863	11863			1	
AETAAKHGEAQVK	2	Acetyl (K)	1380.6997	0.69974224	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.1	0.832						4	8	4	1		5	8	4	12.858	4.491	2;3	4.9554E-30	5003	160513_QHF_FH_JSI10Kac_4	168.61	132.27			0.66728	0.72167	202.8	13	2	Median	NaN	NaN	NaN	0	0	Median	1.3272	1.5844	14.559	4	0	Median	0.27995	0.27634	332.56	5	2	Median	0.65699	0.70439	14.333	4	0	Median	1268400000	907510000	360840000	0	0	0	261750000	121370000	140370000	821610000	663590000	158020000	184990000	122550000	62443000	1509	1144	1435	8792;8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806;8807;8808	11864;11865;11866;11867;11868;11869;11870;11871;11872;11873;11874;11875;11876;11877;11878;11879;11880;11881;11882;11883;11884;11885;11886;11887;11888;11889;11890	11868	1002;1003		27	
AETEALSK	1	Acetyl (Protein N-term)	889.43928	0.43927702	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	29.505	25.116	2	0.00060622	22564	160511_QHF_FH_JSI10i_1	64.265	48.825			1.1161	1.2012	31.317	2	0	Median	NaN	NaN	NaN	0	0	Median	1.253	1.4989	NaN	1	0	Median	0.99411	0.96257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77898000	37303000	40595000	0	0	0	67563000	32175000	35388000	10335000	5127900	5207200	0	0	0	1510	4448	1436	8809;8810;8811;8812;8813	11891;11892;11893;11894;11895;11896	11893			6	
AETEEGPDVLR	0	Unmodified	1214.5779	0.57789577	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	37.524	28.735	2	0.00013843	16712	160513_QHF_FH_JSI11Kac_3	93.111	77.96			1.2983	1.3098	11.123	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1003	1.3098	NaN	1	1	Median	1.228	1.2098	NaN	1	1	Median	1.3696	1.507	NaN	1	1	Median	13147000	6556700	6590300	0	0	0	2748500	1538100	1210400	5127200	2503000	2624200	5271300	2515500	2755700	1511	2674	1437	8814;8815;8816	11897;11898;11899	11897			3	
AETLAGAMPNEAGGHPDAR	0	Unmodified	1863.8534	0.85335912	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	34.543	33.712	3	2.3791E-09	28710	160511_QHF_FH_JSI11i_2	94.387	84.466			0.95576	1.0296	21.372	5	4	Median	1.3941	1.1875	NaN	1	1	Median	0.63151	0.7434	NaN	1	1	Median	0.86213	0.87638	23.54	2	2	Median	0.95576	1.0296	NaN	1	0	Median	132200000	64309000	67887000	21558000	7793900	13765000	16634000	12641000	3992400	67172000	29048000	38124000	26831000	14825000	12006000	1512	5696	1438	8817;8818;8819;8820;8821;8822;8823	11900;11901;11902;11903;11904;11905;11906;11907	11905			8	
AETLEFNDVYQEVK	1	Acetyl (Protein N-term)	1725.8097	0.8097462	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.304	87.861	2	8.9559E-82	80079	160511_QHF_FH_JSI11i_1	140.07	130.39			1.0939	1.0513	6.0613	4	0	Median	1.1872	0.99085	NaN	1	0	Median	0.88887	1.0265	NaN	1	0	Median	1.1094	1.0766	NaN	1	0	Median	1.0786	1.1395	NaN	1	0	Median	1033800000	506390000	527410000	210110000	91935000	118180000	328780000	177020000	151770000	290020000	141410000	148600000	204880000	96022000	108860000	1513	2277	1439	8824;8825;8826;8827	11908;11909;11910;11911;11912;11913	11909			6	
AETLMTVTDPVHDIAFAPNLGR	0	Unmodified	2367.1893	0.18928069	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			94.377	94.116	3	1.8818E-18	83524	160511_QHF_FH_JSI10i_2	139.83	131.83			1.1775	1.2168	4.5078	2	2	Median	1.4534	1.2562	NaN	1	1	Median	0.95398	1.1786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180280000	92983000	87296000	79295000	37915000	41380000	100980000	55068000	45915000	0	0	0	0	0	0	1514	4042	1440	8828;8829	11914;11915	11915			2	
AETLPGSGDSGPGTASLGPGVAETGTRR	0	Acetyl (Protein N-term)	2639.2787	0.27870064	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				61.636	60.549	3	3.0953E-06	53802	160511_QHF_FH_JSI9i_1	53.865	47.216			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1515	2501	1441	8830	11916	11916			1	
AETLSGLGDSGAAGAAALSSASSETGTRR	0	Acetyl (Protein N-term)	2692.29	0.28999361	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	75.197	74.74	2;3	5.6936E-28	67968	160511_QHF_FH_JSI11i_1	137.32	129.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1516	2670	1442	8831;8832;8833;8834;8835	11917;11918;11919;11920;11921	11918			5	
AETNDSYHIILK	1	Unmodified	1402.7092	0.70924429	2308	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.6	5.2		4						1		1		3	1	43.519	40.134	2;3	0.00022123	34314	160511_QHF_FH_JSI11i_2	94.692	64.437			1.164	1.1418	16.794	4	2	Median	1.3541	1.1436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0367	0.99627	19.054	2	2	Median	1.1297	1.2972	NaN	1	0	Median	100020000	46956000	53061000	40744000	19021000	21723000	0	0	0	11596000	5427500	6168800	47676000	22507000	25169000	1517	2308	1443	8836;8837;8838;8839;8840	11922;11923;11924;11925;11926	11924			4	
AETPTAAEDDNEGDK	1	Unmodified	1561.638	0.63798942	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	3.85	6				1					2	1	3	1	13.069	11.113	2	8.2416E-100	9487	160511_QHF_FH_JSI11i_1	229.54	201.53			1.0347	1.1046	24.337	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1159	1.3111	NaN	1	0	Median	1.1673	1.1315	27.637	2	1	Median	0.81009	0.84569	NaN	1	1	Median	460660000	227240000	233420000	0	0	0	141640000	55185000	86451000	164560000	82587000	81969000	154470000	89467000	64999000	1518	454	1444	8841;8842;8843;8844;8845;8846;8847	11927;11928;11929;11930;11931;11932;11933	11928			7	
AETPTAAEDDNEGDKK	2	Unmodified	1689.733	0.73295244	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	9.8538	9.4407	2;3	4.0904E-66	7087	160511_QHF_FH_JSI10i_1	233.14	222.67			0.91558	0.8877	13.193	6	1	Median	1.244	1.0083	19.598	2	0	Median	0.71572	0.83035	8.2446	2	1	Median	0.92012	0.89526	NaN	1	0	Median	0.91106	0.97406	NaN	1	0	Median	1043600000	592820000	450780000	276780000	140910000	135870000	239700000	153040000	86660000	265760000	148100000	117660000	261360000	150770000	110580000	1519	454	1445	8848;8849;8850;8851;8852;8853	11934;11935;11936;11937;11938;11939;11940;11941;11942;11943	11938			10	
AETPTESVSEPEVATK	1	Unmodified	1673.7996	0.79957544	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	35.869	35.313	2;3	1.355E-27	31984	160511_QHF_FH_JSI12i_1	146.5	124.03			1.0246	1.0169	44.889	5	3	Median	1.0246	0.8461	NaN	1	0	Median	1.2244	1.4566	76.144	2	1	Median	1.1418	1.0686	NaN	1	1	Median	0.948	1.0169	NaN	1	1	Median	274430000	118230000	156200000	46354000	21578000	24776000	116880000	47758000	69126000	67231000	30313000	36918000	43963000	18579000	25384000	1520	1148	1446	8854;8855;8856;8857;8858;8859;8860	11944;11945;11946;11947;11948;11949;11950;11951;11952	11946			9	
AETQEGEPIAK	1	Unmodified	1171.5721	0.57208211	5444	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	13.63	12.968	2	0.00047148	10704	160511_QHF_FH_JSI12i_1	79.16	45.898			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1521	5444	1447	8861;8862	11953;11954	11953			2	
AETVADTR	0	Acetyl (Protein N-term)	903.42977	0.42977497	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	0.471				4	2						1	2	3	25.842	18.429	2	0.0027716	8311	160513_QHF_FH_JSI12Kacf_1	82.452	56.558			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1522	419	1448	8863;8864;8865;8866;8867;8868	11955;11956;11957;11958;11959;11960	11957			6	
AETVADTRR	0	Acetyl (Protein N-term)	1059.5309	0.530886	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.21	4	3				2	3	1		2	3	3	5	17.506	13.445	2	5.478E-23	11761	160511_QHF_FH_JSI9i_1	212.58	161.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1523	419	1449	8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879;8880;8881	11961;11962;11963;11964;11965;11966;11967;11968;11969;11970;11971;11972;11973	11968			13	
AETWLLAAWHVK	1	Unmodified	1423.7612	0.76122028	4804	Q9H9A7	RMI1	RecQ-mediated genome instability protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.317	74.072	3	5.0065E-09	41632	160513_QHF_FH_JSI10Kac_6	114.86	106.69			0.90806	0.7853	13.933	4	0	Linear	0.92267	0.78341	NaN	1	0	Median	0.67831	0.81189	NaN	1	0	Median	1.0799	1.0615	NaN	1	0	Median	0.89368	0.93534	NaN	1	0	Median	280230000	148830000	131400000	95350000	46580000	48770000	91640000	52742000	38898000	44124000	20098000	24026000	49116000	29407000	19709000	1524	4804	1450	8882;8883;8884;8885	11974;11975;11976;11977;11978;11979	11978			5	
AEVAAEFLNDRVPNCNVVPHFNK	1	Unmodified	2639.2915	0.29145435	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			75.756	74.327	4	0.00017459	62327	160511_QHF_FH_JSI10i_3	47.499	44.576			1.0414	1.1542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0414	1.1542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20573000	8028000	12545000	0	0	0	20573000	8028000	12545000	0	0	0	0	0	0	1525	3695	1451	8886	11980;11981	11980			2	
AEVAESR	0	Unmodified	760.37153	0.37153181	73	CON__Q3SX28			yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	4.9721	4.6817	2	0.0096292	2622	160511_QHF_FH_JSI10i_1	78.324	36.431		+	1.2248	1.3673	13.186	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0464	1.2456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4336	1.501	NaN	1	0	Median	1162200000	534970000	627260000	0	0	0	573730000	296110000	277620000	0	0	0	588500000	238860000	349640000	1526	73	1452	8887;8888	11982	11982			1	
AEVATELPK	1	Unmodified	956.51786	0.51786169	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.903	29.335	2	0.002543	26312	160511_QHF_FH_JSI12i_1	64.42	24.774			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1527	3359	1453	8889	11983	11983			1	
AEVDAEKPGATDR	1	Unmodified	1357.6474	0.64737232	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				11.963	11.114	2	0.0071529	8601	160511_QHF_FH_JSI9i_1	94.616	58.282			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5064700	0	5064700	5064700	0	5064700	0	0	0	0	0	0	0	0	0	1528	3900	1454	8890	11984	11984			1	
AEVDMDTDAPQVSHKPGGEPK	2	Unmodified	2207.0165	0.016461285	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	30.679	30.1	3;4	7.3401E-10	26045	160511_QHF_FH_JSI11i_3	109.89	100.52			1.0985	1.1671	23.294	10	2	Median	1.5823	1.361	26.786	2	2	Median	0.85767	1.0636	18.196	2	0	Median	0.91955	0.88521	21.581	3	0	Median	1.2914	1.308	20.764	3	0	Median	769160000	380590000	388580000	77635000	30462000	47173000	133640000	69143000	64502000	308180000	155980000	152190000	249710000	125000000	124710000	1529	2517	1455	8891;8892;8893;8894;8895;8896;8897;8898;8899;8900;8901	11985;11986;11987;11988;11989;11990;11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001	11988			17	
AEVDMDTDAPQVSHKPGGEPK	2	Oxidation (M)	2223.0114	0.011375907	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		30.089	30.089	3	0.00053271	26042	160511_QHF_FH_JSI11i_3	52.298	44.111			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1530	2517	1455	8902	12002	12002		1985	1	
AEVEETLK	1	Acetyl (Protein N-term)	959.48114	0.48114184	4891	Q9NP97;Q8TF09	DYNLRB1;DYNLRB2	Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	1	3	2	49.511	45.746	1;2	0.0011698	40854	160511_QHF_FH_JSI9i_1	52.716	50.029			0.97126	0.96559	119.15	3	1	Plateau	1.2153	1.0091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8.2126	7.7707	NaN	1	1	Median	0.93918	0.96559	NaN	1	0	Median	164670000	73446000	91221000	67004000	26960000	40044000	0	0	0	1315700	34007	1281700	96347000	46452000	49895000	1531	4891	1456	8903;8904;8905;8906;8907;8908;8909	12003;12004;12005;12006;12007;12008	12005			6	
AEVEQKK	2	Acetyl (Protein N-term)	872.46035	0.46034682	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	8.1523	7.8114	2	0.0040583	5677	160511_QHF_FH_JSI11i_1	70.268	40.695			0.85384	0.92075	5.0022	6	0	Median	1.1783	0.94295	NaN	1	0	Median	0.79439	0.95804	3.7586	2	0	Median	0.88928	0.88069	4.434	2	0	Median	0.83087	0.88507	NaN	1	0	Median	5336400000	2886300000	2450200000	1240400000	563770000	676630000	1444600000	827850000	616740000	1366800000	805940000	560870000	1284600000	688700000	595930000	1532	2024	1457	8910;8911;8912;8913;8914;8915	12009;12010;12011;12012;12013;12014;12015;12016	12009			8	
AEVEQKK	2	Acetyl (K);Acetyl (Protein N-term)	914.47091	0.4709115	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		26.659	19.159	2	0.0060042	8406	160513_QHF_FH_JSI11Kac_1	66.682	29.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1533	2024	1457	8916	12017	12017	2063		1	
AEVEVADELLENLAK	1	Unmodified	1641.8461	0.84613171	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	100.69	100.61	3	4.1763E-08	91289	160511_QHF_FH_JSI12i_1	93.823	74.499			0.63748	0.68911	19.974	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69985	0.79365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58067	0.59834	NaN	1	0	Median	57197000	31169000	26028000	0	0	0	22488000	14124000	8364300	0	0	0	34708000	17044000	17664000	1534	3231	1458	8917;8918;8919	12018;12019;12020;12021;12022	12018			5	
AEVHESYK	1	Unmodified	961.45051	0.45051041	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	7.6676	7.0659	2	0.054621	4897	160511_QHF_FH_JSI12i_2	83.206	32.599			0.85528	0.91937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85528	0.91937	NaN	1	0	Median	43609000	28322000	15287000	0	0	0	0	0	0	0	0	0	43609000	28322000	15287000	1535	2624	1459	8920	12023	12023			0	
AEVHESYKHLK	2	Acetyl (K)	1381.699	0.69901396	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	1	By matching	By MS/MS		By MS/MS	16	0									4	1	1		2	26.312	18.312	3;4	0.0087657	10529	160513_QHF_FH_JSI10Kac_6	49.081	33.693			1.1071	1.078	30.41	2	0	Median	1.5667	1.3366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78236	0.86941	NaN	1	0	Median	14970000	6378800	8591700	4819700	1294300	3525400	0	0	0	0	0	0	10151000	5084500	5066300	1536	2624	1460	8921;8922;8923;8924	12024;12025;12026	12026	2586		3	
AEVIMNYHVGETVLSLQK	1	Unmodified	2030.0507	0.050661947	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1	1	1	4	3	77.833	76.6	2;3	4.4334E-16	66958	160511_QHF_FH_JSI12i_3	116.84	96.175			1.0388	1.036	12.842	7	3	Median	1.282	1.144	NaN	1	0	Median	1.0696	1.2844	NaN	1	1	Median	1.1283	1.036	9.4876	3	2	Plateau	0.92802	0.99187	10.093	2	0	Median	594740000	286330000	308400000	36495000	17863000	18632000	41308000	13239000	28069000	243890000	119790000	124090000	273050000	135440000	137610000	1537	2665	1461	8925;8926;8927;8928;8929;8930;8931;8932;8933	12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037	12036			11	
AEVLISTVGPEDCVVPFLTRPK	1	Unmodified	2426.2879	0.28793211	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		96.592	96.592	3	0.043867	86033	160511_QHF_FH_JSI11i_3	27.495	19.598			0.75301	0.71207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75301	0.71207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11698000	6781600	4916300	0	0	0	0	0	0	11698000	6781600	4916300	0	0	0	1538	1872	1462	8934	12038	12038			1	
AEVLSEEPILK	1	Unmodified	1226.6758	0.6758189	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	5.83	4	1			1	5	2			1	5	2	5	61.647	55.969	2	9.2352E-31	49535	160511_QHF_FH_JSI9i_1	196.88	175.98			0.93204	0.93006	34.41	11	1	Median	1.0199	0.83048	NaN	1	0	Median	0.60901	0.72656	21.497	4	1	Median	1.2234	1.1967	11.141	2	0	Median	0.99723	1.0687	35.162	4	0	Median	3737400000	1873200000	1864200000	667320000	317350000	349970000	992560000	581170000	411400000	997450000	440780000	556670000	1080100000	533920000	546200000	1539	3218	1463	8935;8936;8937;8938;8939;8940;8941;8942;8943;8944;8945;8946;8947	12039;12040;12041;12042;12043;12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062	12054			24	
AEVLWLMGAK	1	Unmodified	1116.6002	0.60015154	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	2	1	2	80.539	77.502	2	2.4401E-07	69612	160511_QHF_FH_JSI11i_2	114.89	89.158			0.9398	1.0675	4.9342	6	0	Median	1.2582	1.097	NaN	1	0	Median	0.91964	1.1092	0.65369	2	0	Median	1.0356	1.0328	NaN	1	0	Median	0.90771	1.0103	3.9401	2	0	Median	247470000	141380000	106090000	31540000	11252000	20288000	116400000	78135000	38268000	52429000	31012000	21417000	47100000	20985000	26115000	1540	623	1464	8948;8949;8950;8951;8952;8953	12063;12064;12065;12066;12067;12068;12069	12065			7	
AEVPEDKPK	2	Unmodified	1011.5237	0.52367535	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	9.2027	8.8372	2	0.0042028	6539	160511_QHF_FH_JSI11i_1	99.442	73.705			0.95966	0.84092	61.686	8	8	Median	1.6282	1.3299	88.199	2	2	Median	0.74525	0.88593	96.777	2	2	Median	0.86592	0.81812	27.263	2	2	Median	1.0512	1.1036	76.47	2	2	Median	440370000	222720000	217650000	97040000	41453000	55587000	110620000	61912000	48713000	99313000	51680000	47633000	133390000	67673000	65718000	1541	723	1465	8954;8955;8956;8957;8958;8959;8960;8961	12070;12071;12072;12073;12074;12075;12076;12077	12070			8	
AEVPEDKPK	2	Acetyl (K)	1053.5342	0.53424004	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	1	0	0	1			By MS/MS		12	0					1							1		27.855	20.467	2	0.026447	9432	160513_QHF_FH_JSI11Kac_2	60.436	27.966			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1306800	1306800	0	0	0	0	0	0	0	1306800	1306800	0	0	0	0	1542	723	1465	8962	12078	12078	356		1	
AEVQKLQMEAPHIIVGTPGR	1	Acetyl (K);Oxidation (M)	2231.1732	0.1732367	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		74.613	63.916	3	0.00056116	34113	160513_QHF_FH_JSI11Kac_5	76.155	66.739			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6854800	6854800	0	0	0	0	0	0	0	6854800	6854800	0	0	0	0	1543	1917	1466	8963	12079	12079	1920	1586	1	
AEVQNLGGELVVSGVDSAMSLIQAAK	1	Unmodified	2585.3371	0.33706714	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	102.84	102.75	3	7.9768E-42	88672	160511_QHF_FH_JSI12i_2	178.11	164.66			0.9455	0.97961	7.121	7	0	Median	1.1447	0.97961	NaN	1	0	Median	0.75548	0.89829	10.734	2	0	Median	0.96798	0.97661	7.104	2	0	Median	0.93307	1.001	2.3159	2	0	Median	1265200000	667360000	597810000	119850000	59402000	60444000	352330000	207740000	144600000	529800000	266040000	263760000	263190000	134180000	129010000	1544	1421	1467	8964;8965;8966;8967;8968;8969;8970	12080;12081;12082;12083;12084;12085;12086;12087;12088;12089	12081			10	
AEVQVLVLDGR	0	Acetyl (Protein N-term)	1239.6823	0.68230126	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.806	7	1	2							2	3	1	4	87.558	86.923	2	8.1683E-08	79021	160511_QHF_FH_JSI10i_1	180.67	157.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1545	1497	1468	8971;8972;8973;8974;8975;8976;8977;8978;8979;8980	12090;12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101	12098			12	
AEVSELK	1	Unmodified	774.41233	0.41233399	2069	P67936;Q2TAC2	TPM4;CCDC57	Tropomyosin alpha-4 chain;Coiled-coil domain-containing protein 57	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	3	2	17.385	13.475	2	0.0017493	8303	160513_QHF_FH_JSI10Kac_3	105.39	10.983			0.958	0.92537	18.818	8	0	Median	1.0349	0.84298	NaN	1	0	Median	0.70865	0.83906	15.755	2	0	Median	0.97091	0.93118	23.623	3	0	Median	0.92536	1.0054	15.583	2	0	Median	3516200000	1880100000	1636000000	670620000	330750000	339860000	941250000	572220000	369030000	1005100000	513300000	491780000	899220000	463850000	435360000	1546	2069	1469	8981;8982;8983;8984;8985;8986;8987;8988;8989	12102;12103;12104;12105;12106;12107;12108;12109;12110	12109			9	
AEVSIDQSK	1	Acetyl (Protein N-term)	1017.4979	0.49785453	3408	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	32.949	32.373	2	0.0053372	29204	160511_QHF_FH_JSI12i_1	31.379	16.118			0.97123	1.0337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97123	1.0337	NaN	1	0	Median	36239000	18657000	17583000	0	0	0	0	0	0	0	0	0	36239000	18657000	17583000	1547	3408	1470	8990	12111	12111			1	
AEVSQPR	0	Unmodified	785.40317	0.40316629	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	3	1	7.0588	4.7508	2	0.010534	3948	160511_QHF_FH_JSI12i_1	74.415	34.312			1.0112	1.0593	9.8008	7	0	Median	1.1969	0.97692	NaN	1	0	Median	0.86958	1.0221	12.673	2	0	Median	1.0842	1.0593	13.491	3	0	Median	1.0112	1.0773	NaN	1	0	Median	1943000000	982360000	960620000	308920000	136430000	172490000	361050000	198990000	162070000	931760000	480770000	450990000	341250000	166180000	175080000	1548	1208	1471	8991;8992;8993;8994;8995;8996;8997	12112;12113;12114;12115;12116;12117	12113			6	
AEVTAPDVK	1	Unmodified	928.48656	0.48656157	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.812	22.278	2	8.0807E-06	19092	160511_QHF_FH_JSI9i_1	112.41	65.344			0.71865	0.68902	17.346	4	2	Median	0.88218	0.72046	NaN	1	0	Median	0.44397	0.52378	NaN	1	1	Median	0.79349	0.78323	NaN	1	1	Median	0.65087	0.65895	NaN	1	0	Median	461950000	250320000	211640000	126950000	61962000	64988000	109470000	65009000	44464000	93983000	49529000	44453000	131550000	73818000	57730000	1549	3405	1472	8998;8999;9000;9001	12118;12119;12120;12121;12122	12122			5	
AEVTLDGVWPTDK	1	Unmodified	1429.7089	0.70890994	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	71.154	70.681	2	0.00010273	64216	160511_QHF_FH_JSI11i_1	107.18	59.352			1.2364	1.187	27.891	5	2	Median	1.0263	0.84708	NaN	1	0	Median	1.372	1.598	7.015	2	2	Median	1.2364	1.187	NaN	1	0	Median	1.0159	1.036	NaN	1	0	Median	191400000	95952000	95450000	23985000	12522000	11463000	99067000	49571000	49496000	36131000	17838000	18293000	32219000	16021000	16198000	1550	1790	1473	9002;9003;9004;9005;9006	12123;12124;12125;12126;12127;12128	12123			6	
AEVTMGDPHQQTLAR	0	Unmodified	1652.7941	0.79405333	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.865	28.546	2	0.0077175	25342	160511_QHF_FH_JSI10i_1	49.448	36.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1551	2469	1474	9007	12129	12129			1	
AEVVDEIAAK	1	Unmodified	1043.5499	0.5498901	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5	5.66	2					1				1	1		1	42.23	37.177	2	1.3193E-08	33087	160511_QHF_FH_JSI10i_1	119.75	84.451			0.67864	0.64839	49.744	2	2	Median	1.0858	0.92171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42416	0.45612	NaN	1	1	Median	67541000	33820000	33721000	65897000	32860000	33036000	0	0	0	0	0	0	1644500	959980	684530	1552	3686	1475	9008;9009;9010	12130;12131;12132	12130			3	
AEVVGKPSPEFFK	2	Unmodified	1433.7555	0.7554662	4616	Q9H008	LHPP	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	48.729	48.488	2;3	0.00080475	41433	160511_QHF_FH_JSI12i_3	67.275	46.024			0.93529	0.95086	13.587	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93529	0.95086	13.587	2	2	Median	281890000	148710000	133180000	0	0	0	0	0	0	0	0	0	281890000	148710000	133180000	1553	4616	1476	9011;9012;9013	12133;12134;12135;12136	12135			4	
AEVVLGNIIK	1	Unmodified	1054.6386	0.63864553	2384	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.082	64.159	2	0.00084622	55213	160511_QHF_FH_JSI12i_2	69.423	60.209			0.9261	0.96481	28.84	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82542	0.78683	NaN	1	0	Median	1.0391	1.1831	NaN	1	0	Median	25544000	13530000	12014000	0	0	0	0	0	0	15265000	8804600	6460600	10279000	4725600	5553500	1554	2384	1477	9014;9015	12137;12138	12137			1	
AEWLLAVR	0	Unmodified	956.54435	0.54435122	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			67.794	66.976	2	0.0019928	59463	160511_QHF_FH_JSI10i_2	81.119	46.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1555	4959	1478	9016	12139	12139			1	
AEWQVYK	1	Unmodified	922.45487	0.45486751	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	34.753	34.03	2	0.0037149	28914	160511_QHF_FH_JSI12i_2	102.72	54.215			0.87008	0.87514	18.205	6	0	Median	1.1019	0.93492	NaN	1	0	Median	0.73799	0.87905	31.06	2	0	Median	0.89998	0.90071	13.418	2	0	Median	0.62546	0.70571	NaN	1	0	Median	896530000	504530000	391990000	140050000	69952000	70096000	235740000	131920000	103820000	366090000	220130000	145960000	154650000	82527000	72125000	1556	2144	1479	9017;9018;9019;9020;9021;9022	12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150	12142			11	
AEWQVYKEEISR	1	Acetyl (K)	1578.7678	0.7678218	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.74	66.105	2	0.011936	35183	160513_QHF_FH_JSI11Kac_5	79.693	55.842			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1557	2144	1480	9023	12151	12151	2240		1	
AEYDLTTR	0	Acetyl (Protein N-term)	1009.4716	0.47163978	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	3.75	4.76	3				1					1		2	1	42.751	39.887	2	0.00051452	35515	160511_QHF_FH_JSI9i_1	97.093	91.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1558	1909	1481	9024;9025;9026;9027	12152;12153;12154;12155;12156	12156			5	
AEYEFDSPYWDDISDSAK	1	Unmodified	2136.88	0.88001061	3392	Q8IU85;Q14012	CAMK1D;CAMK1	Calcium/calmodulin-dependent protein kinase type 1D;Calcium/calmodulin-dependent protein kinase type 1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	82.684	82.389	2	7.3181E-13	74859	160511_QHF_FH_JSI10i_1	176.87	167.36			0.89679	0.95186	18.023	4	4	Median	NaN	NaN	NaN	0	0	Median	0.99492	1.1195	16.622	2	2	Median	0.8583	0.82643	NaN	1	1	Median	0.92472	0.91022	NaN	1	1	Median	69928000	36565000	33363000	0	0	0	46046000	24442000	21603000	12116000	7900900	4215000	11766000	4221500	7544500	1559	3392	1482	9028;9029;9030;9031;9032	12157;12158;12159;12160;12161	12161			5	
AEYEGDGIPTVFVAVAGR	0	Unmodified	1849.921	0.92102798	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.774	8	8	5							5	5	6	5	88.935	88.399	2;3	1.8249E-98	80591	160511_QHF_FH_JSI11i_1	260.81	236.96			0.9372	1.0035	18.722	20	0	Median	1.2184	1.0608	14.39	5	0	Median	0.8465	1.0053	4.0641	5	0	Median	0.95505	0.92941	9.3618	5	0	Median	0.92993	0.99517	35.658	5	0	Median	2301000000	1202800000	1098200000	303850000	145850000	158000000	875460000	478770000	396690000	523760000	267840000	255920000	597950000	310340000	287610000	1560	1206	1483	9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053	12162;12163;12164;12165;12166;12167;12168;12169;12170;12171;12172;12173;12174;12175;12176;12177;12178;12179;12180;12181;12182;12183;12184;12185;12186;12187;12188;12189;12190;12191;12192;12193;12194;12195;12196;12197	12165			34	
AEYLASIFGTEK	1	Acetyl (Protein N-term)	1369.6765	0.67654718	956	P0DN76;Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	0	1	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	2	1	1	102.65	102.56	2	1.1442E-32	93161	160511_QHF_FH_JSI12i_1	117.7	108.84			1.0189	0.98355	6.7935	4	0	Median	1.1042	0.9138	NaN	1	0	Median	0.81454	0.96399	NaN	1	0	Median	1.0305	1.0035	NaN	1	0	Median	1.0074	1.0736	NaN	1	0	Median	2723500000	1400600000	1322900000	542940000	265770000	277170000	768930000	425650000	343280000	731100000	363780000	367310000	680540000	345400000	335140000	1561	956	1484	9054;9055;9056;9057;9058	12198;12199;12200;12201	12200			4	
AEYWAVSSLTGENVR	0	Unmodified	1680.8107	0.81074925	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	70.612	69.612	2	1.3214E-06	60943	160511_QHF_FH_JSI11i_2	160.15	123.63			0.92547	1.0323	11.15	4	2	Median	NaN	NaN	NaN	0	0	Median	0.99945	1.1956	NaN	1	0	Median	0.91783	0.9169	NaN	1	0	Median	0.90787	1.0323	4.3402	2	2	Median	187140000	92250000	94893000	0	0	0	63569000	30987000	32582000	53590000	27637000	25952000	69985000	33626000	36359000	1562	4562	1485	9059;9060;9061;9062	12202;12203;12204;12205;12206;12207	12204			6	
AFAAGADIK	1	Unmodified	862.45487	0.45486751	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	28.743	27.035	2	2.2076E-05	22722	160511_QHF_FH_JSI12i_2	106.04	64.54			0.95042	1.0159	12.975	9	0	Median	1.2815	1.0657	6.323	2	0	Median	0.82724	1.0001	1.868	2	0	Median	0.92153	0.92959	3.5972	2	0	Median	1.1314	1.2233	18.654	3	0	Plateau	4737600000	2321200000	2416400000	980140000	442160000	537990000	1369500000	680010000	689530000	1543700000	770870000	772870000	844190000	428180000	416010000	1563	1341	1486	9063;9064;9065;9066;9067;9068;9069;9070;9071	12208;12209;12210;12211;12212;12213;12214;12215;12216;12217;12218;12219;12220;12221;12222;12223;12224;12225	12211			18	
AFAAQEDLEK	1	Unmodified	1120.5401	0.5400537	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.83	4	2				1	2			1	3	2	3	36.428	32.701	2	8.6819E-19	28800	160511_QHF_FH_JSI9i_1	171.36	147.21			0.83224	0.98613	30.958	9	1	Median	1.4096	1.1451	NaN	1	0	Median	0.82429	0.97031	4.6656	3	1	Median	0.74075	0.72348	59.865	2	0	Median	1.0075	1.0834	29.813	3	0	Median	3168900000	1479800000	1689000000	644420000	254120000	390300000	932560000	503310000	429250000	916420000	428970000	487460000	675480000	293450000	382030000	1564	1426	1487	9072;9073;9074;9075;9076;9077;9078;9079;9080	12226;12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239	12236			14	
AFAASLLDYIGSQAQYLHTFMAITHAAK	1	Oxidation (M)	3054.5273	0.52732753	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.316	88.254	4	5.2005E-50	49652	160513_QHF_FH_JSI9Kac_6	174.53	157.19			0.98432	0.93543	10.738	3	0	Median	1.0222	0.89169	NaN	1	0	Median	0.95033	1.0948	NaN	1	0	Median	0.98432	0.93543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	969170000	474030000	495150000	343030000	161200000	181830000	189070000	86514000	102560000	437070000	226310000	210760000	0	0	0	1565	486	1488	9081;9082;9083	12240;12241;12242;12243	12241		183	4	
AFAASLLDYIGSQAQYLHTFMAITHAAK	1	Unmodified	3038.5324	0.53241291	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	1	3	2	97.813	88.931	3;4	2.4928E-173	50634	160513_QHF_FH_JSI11Kac_6	324.02	288.4			1.023	0.93763	7.7997	8	5	Median	1.1384	0.97448	8.96	2	1	Median	0.80106	0.95226	NaN	1	0	Median	0.98629	0.92205	8.9995	3	2	Plateau	0.86405	0.90718	2.4785	2	2	Median	7682000000	3990900000	3691100000	1511300000	760980000	750360000	2068900000	1078900000	989980000	1877900000	944130000	933750000	2223900000	1206900000	1017000000	1566	486	1488	9084;9085;9086;9087;9088;9089;9090;9091	12244;12245;12246;12247;12248;12249;12250;12251;12252;12253	12247			10	
AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR	0	Unmodified	3337.6368	0.63675464	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		73.514	73.107	4	0.00037031	65342	160511_QHF_FH_JSI11i_3	35.96	30.904			1.6696	1.5359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6696	1.5359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32210000	7572600	24638000	4381200	0	4381200	0	0	0	27829000	7572600	20257000	0	0	0	1567	2506	1489	9092;9093	12254;12255	12254			2	
AFADALEVIPMALSENSGMNPIQTMTEVR	0	Unmodified	3134.5086	0.50864228	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.57	0.495		3	4							2		4	1	102.63	102.59	3;4	5.0648E-60	90453	160511_QHF_FH_JSI9i_2	198.09	177.43			1.2619	1.2509	9.4222	6	2	Median	1.4513	1.2412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1204	1.2446	11.896	4	2	Linear	1.2807	1.3208	NaN	1	0	Median	2060700000	811810000	1248900000	498450000	189400000	309050000	0	0	0	1361000000	535200000	825830000	201200000	87213000	113990000	1568	1630	1490	9094;9095;9096;9097;9098;9099;9100	12256;12257;12258;12259;12260;12261;12262	12259			7	
AFADALEVIPMALSENSGMNPIQTMTEVR	0	Oxidation (M)	3150.5036	0.5035569	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	0			By matching	By MS/MS	2.5	0.5		1	1									1	1	102.28	102.23	3	1.7295E-37	89033	160511_QHF_FH_JSI12i_3	161.51	156.89			1.0566	1.0628	14.23	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97508	0.96104	NaN	1	0	Median	1.145	1.1753	NaN	1	0	Median	351740000	157630000	194120000	0	0	0	0	0	0	82532000	39502000	43030000	269210000	118130000	151090000	1569	1630	1490	9101;9102	12263	12263		1299	1	
AFADAMEVIPSTLAENAGLNPISTVTELR	0	Unmodified	3029.538	0.53795179	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.1	0.831	3	3	4							2	2	3	3	102.23	102.16	3;4	1.727E-27	92885	160511_QHF_FH_JSI11i_1	134.45	127.88			1.1249	1.0423	13.011	9	1	Median	1.1847	1.0008	4.3952	2	0	Median	0.84536	1.0423	NaN	1	0	Median	1.0761	0.96256	12.138	3	0	Plateau	1.2244	1.2455	15.017	3	1	Median	2220500000	1048500000	1172000000	134530000	63260000	71267000	384900000	199190000	185710000	866220000	389790000	476420000	834890000	396290000	438600000	1570	1722	1491	9103;9104;9105;9106;9107;9108;9109;9110;9111;9112	12264;12265;12266;12267;12268	12264			5	
AFADFLFASTILHLVVMNFVG	0	Unmodified	2311.2075	0.20749694	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	0	0	0			By MS/MS		11.5	0.5				1	1							2		106.54	97.37	3	0.0046438	35036	160513_QHF_FH_JSI11Kac_2	54.368	45.205			0.92499	0.8711	7.6066	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92499	0.8711	7.6066	2	1	Median	NaN	NaN	NaN	0	0	Median	7097600	3842000	3255500	0	0	0	0	0	0	7097600	3842000	3255500	0	0	0	1571	1964	1492	9113;9114	12269;12270	12269			2	
AFADFLFASTILHLVVMNFVG	0	Oxidation (M)	2327.2024	0.20241156	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	106.17	100.45	3	0.021549	59567	160513_QHF_FH_JSI10Kac_6	31.138	17.683			1.0397	1.2469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0397	1.2469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40508000	18504000	22004000	0	0	0	40508000	18504000	22004000	0	0	0	0	0	0	1572	1964	1492	9115;9116	12271;12272	12272			2	
AFAETHIK	1	Unmodified	915.48142	0.48141661	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	4	3	15.829	15.501	2;3	0.00028345	12732	160511_QHF_FH_JSI11i_3	113.5	93.863			0.88196	0.85273	56.641	9	3	Median	0.33147	0.27413	25.823	2	2	Median	0.9944	1.197	NaN	1	1	Median	0.88929	0.79801	10.191	4	0	Linear	0.9253	0.92905	12.122	2	0	Median	5466300000	3324400000	2142000000	1151000000	993070000	157880000	232970000	153770000	79200000	1937200000	1060200000	877030000	2145200000	1117300000	1027900000	1573	1544	1493	9117;9118;9119;9120;9121;9122;9123;9124;9125;9126	12273;12274;12275;12276;12277;12278;12279;12280;12281;12282;12283;12284;12285	12276			12	
AFAETHIKGFTLNDAANSR	1	Acetyl (K)	2104.0338	0.03376633	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		72.166	63.705	3	2.5783E-23	34438	160513_QHF_FH_JSI11Kac_6	194.92	168.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39687000	25004000	14683000	0	0	0	14683000	0	14683000	25004000	25004000	0	0	0	0	1574	1544	1494	9127;9128	12286;12287;12288;12289	12286	1554		4	
AFAETYPAASSLPNGDCGRPR	0	Acetyl (Protein N-term)	2278.0437	0.043679089	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.67	64.053	2	9.3003E-15	58212	160511_QHF_FH_JSI11i_1	152.47	139.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1575	1356	1495	9129;9130;9131;9132	12290;12291;12292;12293;12294	12290			5	
AFAGDIANQLATDAVQILGGNGFNTEYPVEK	1	Unmodified	3222.5833	0.58332208	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	102.92	102.86	3;4	3.3757E-58	92008	160511_QHF_FH_JSI11i_3	185.48	177.09			1.0815	1.0324	15.24	8	0	Median	1.1314	0.96655	NaN	1	0	Median	0.81006	1.0132	NaN	1	0	Median	1.1697	1.1163	17.785	3	0	Plateau	1.1915	1.143	11.099	3	0	Plateau	643810000	310060000	333750000	89337000	41406000	47931000	95275000	52615000	42660000	248910000	117330000	131580000	210290000	98705000	111580000	1576	997	1496	9133;9134;9135;9136;9137;9138;9139;9140	12295;12296;12297;12298;12299;12300;12301;12302;12303;12304;12305;12306	12296			12	
AFAGPLSPAK	1	Unmodified	957.52837	0.5283668	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		38.992	38.247	2	0.004236	33500	160511_QHF_FH_JSI11i_3	66.621	54.9			0.38479	0.39414	126.36	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86669	0.96314	NaN	1	0	Median	0.17084	0.16129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	428580000	391550000	37038000	0	0	0	20827000	10535000	10292000	407760000	381010000	26746000	0	0	0	1577	3376	1497	9141;9142	12307;12308	12307			2	
AFAHDAGGLPSGTGGLVK	1	Unmodified	1653.8475	0.84746911	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	47.989	47.868	3	0.00011385	40812	160511_QHF_FH_JSI12i_3	58.246	54.066			1.6092	1.5574	5.2007	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7208	1.6158	NaN	1	0	Median	1.5049	1.5012	NaN	1	0	Median	134810000	56652000	78160000	0	0	0	0	0	0	58725000	23973000	34752000	76086000	32678000	43408000	1578	3136	1498	9143;9144;9145	12309;12310	12309			2	
AFAHITGGGLLENIPR	0	Unmodified	1664.8998	0.89983903	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.4	6.43			3						4	2	4	1		75.085	70.08	2;3	7.037E-07	37760	160513_QHF_FH_JSI10Kac_6	124.92	112.13			1.0372	1.1116	14.673	7	3	Median	1.4188	1.1661	8.5939	2	0	Median	0.95606	1.1334	18.744	4	3	Median	1.1326	1.0459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1052000000	560110000	491860000	91985000	30229000	61756000	905030000	506090000	398940000	54949000	23786000	31162000	0	0	0	1579	1205	1499	9146;9147;9148;9149;9150;9151;9152	12311;12312;12313;12314;12315;12316;12317;12318;12319	12318			9	
AFAISGPFNVQFLVK	1	Unmodified	1636.8977	0.89771377	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.77	6.7		3	4						6	3	3	4	3	98.163	94.093	2;3	4.3214E-74	47932	160513_QHF_FH_JSI11Kac_6	218.62	170.91			1.0543	0.99747	9.3149	13	0	Median	1.1786	1.0189	5.169	3	0	Plateau	0.86856	1.0194	5.3999	3	0	Plateau	1.0611	1.0443	11.931	4	0	Median	0.86877	0.91677	11.919	3	0	Median	13854000000	6552600000	7301700000	2861900000	1346800000	1515100000	3181500000	1498100000	1683400000	3878500000	1819300000	2059200000	3932400000	1888400000	2043900000	1580	1372	1500	9153;9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165	12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331;12332;12333;12334;12335;12336;12337;12338;12339;12340	12324			21	
AFAKELFLGK	2	Acetyl (K)	1164.6543	0.6542956	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	80.577	71.893	2	7.7609E-06	37780	160513_QHF_FH_JSI12Kac_6	114.97	102.18			0.83671	0.91164	75.989	5	1	Median	0.83671	0.73045	NaN	1	0	Median	1.6636	1.9591	102.39	2	1	Median	0.61638	0.58752	NaN	1	0	Median	0.85613	0.91164	NaN	1	0	Median	165280000	85612000	79664000	35655000	21687000	13968000	38014000	9990400	28024000	50864000	31839000	19025000	40743000	22095000	18647000	1581	4777	1501	9166;9167;9168;9169;9170	12341;12342;12343;12344;12345	12344	3227;3228		5	
AFAKLPPNALR	1	Acetyl (K)	1238.7135	0.71354181	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	15.4	0.484								5	3	2	3		3	70.332	60.022	2	0.0020649	29992	160513_QHF_FH_JSI12Kac_5	86.011	56.924			2.7807	3.0595	74.184	5	3	Median	3.7482	3.2145	NaN	1	1	Median	1.8202	2.1287	124.15	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7472	1.8871	68.339	2	1	Median	13466000	6671100	6795000	3874200	2454400	1419800	5737800	2893200	2844600	0	0	0	3854100	1323500	2530600	1582	538	1502	9171;9172;9173;9174;9175;9176;9177;9178	12346;12347;12348;12349;12350;12351;12352;12353	12348	275		7	
AFALEVIK	1	Unmodified	889.5273	0.52730417	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.09		4	3					1	2	3	2	2	3	66.778	63.138	2	0.00067397	54295	160511_QHF_FH_JSI12i_2	100.45	62.213			1.0064	0.98961	9.5671	10	0	Median	1.237	1.0145	4.8711	3	0	Median	0.8436	1.0144	19.12	2	0	Median	0.98343	0.96384	7.3067	2	0	Median	0.83278	0.92506	11.179	3	0	Median	690010000	365800000	324200000	143700000	70018000	73683000	151030000	85812000	65219000	170700000	93151000	77547000	224580000	116820000	107750000	1583	4682	1503	9179;9180;9181;9182;9183;9184;9185;9186;9187;9188	12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365	12355			12	
AFALGILK	1	Unmodified	831.52182	0.52182486	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	71.256	70.447	2	0.0030718	60945	160511_QHF_FH_JSI12i_3	75.311	58.384			0.94025	1.0121	71.211	4	0	Median	1.3203	1.0493	NaN	1	0	Median	0.89089	1.0166	NaN	1	0	Median	0.2652	0.24666	NaN	1	0	Median	0.99234	1.0076	NaN	1	0	Median	292760000	168250000	124510000	51320000	24705000	26615000	34788000	18010000	16778000	98406000	74770000	23636000	108240000	50766000	57479000	1584	3001	1504	9189;9190;9191;9192	12366;12367;12368;12369	12369			4	
AFALNDLDDYEK	1	Unmodified	1412.646	0.64597533	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	69.376	68.74	2	8.8891E-05	62290	160511_QHF_FH_JSI12i_1	107.83	96.667			1.024	0.93585	16.745	7	3	Median	1.1012	0.93585	18.832	3	2	Median	0.81065	0.9655	26.659	2	1	Median	1.024	1.0069	NaN	1	0	Median	0.7964	0.82767	NaN	1	0	Median	495200000	255460000	239740000	110000000	48121000	61876000	141840000	89626000	52211000	117500000	57586000	59909000	125870000	60124000	65749000	1585	2509	1505	9193;9194;9195;9196;9197;9198;9199;9200	12370;12371;12372;12373;12374;12375;12376;12377;12378	12372			8	
AFAMIIDK	1	Oxidation (M)	923.47864	0.47863942	2656;2657	Q15365;Q15366	PCBP1;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.3		3	4				2	3	5	4	4	4	5	49.133	42.911	2	0.00011049	23072	160513_QHF_FH_JSI9Kac_5	122.13	66.687			1.0198	1.0735	27.697	17	1	Median	1.3441	1.101	52.453	4	1	Median	1.1217	1.3577	15.567	4	0	Linear	1.3616	1.3491	18.016	4	0	Linear	0.91771	1.0114	15.992	5	0	Median	1133700000	533790000	599880000	184540000	78375000	106170000	244860000	111170000	133690000	349950000	159120000	190840000	354310000	185130000	169180000	1586	2656;2657	1506	9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217	12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406;12407;12408	12384		2075	30	
AFAMIIDK	1	Unmodified	907.48372	0.48372479	2656;2657	Q15365;Q15366	PCBP1;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.67	4	4	4				1	6	4	5	7	6	5	62.628	57.177	2	7.9628E-07	30348	160513_QHF_FH_JSI9Kac_6	138.9	111.37			1.0436	1.0221	46.197	22	1	Median	1.1731	1.019	62.829	5	0	Median	0.93766	1.1243	64.085	7	0	Median	1.0465	1.0153	22.16	5	1	Median	0.94482	0.98069	21.625	5	0	Median	14384000000	6789300000	7594500000	2525900000	1140500000	1385400000	3044100000	1646200000	1397800000	4561000000	2000300000	2560700000	4252800000	2002200000	2250600000	1587	2656;2657	1506	9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240	12409;12410;12411;12412;12413;12414;12415;12416;12417;12418;12419;12420;12421;12422;12423;12424;12425;12426;12427;12428;12429;12430;12431;12432;12433;12434;12435;12436;12437;12438;12439;12440;12441;12442;12443;12444;12445;12446;12447;12448;12449;12450;12451;12452;12453;12454;12455;12456;12457;12458	12449			50	
AFAMTNQILVEK	1	Unmodified	1363.717	0.71697221	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.44	2	4	4					1	4	3	5	4	3	68.511	64.977	2	1.7307E-41	59177	160511_QHF_FH_JSI10i_1	199.08	127.85			0.85694	0.90773	11.957	15	0	Median	1.0432	0.89818	5.4106	3	0	Plateau	0.74209	0.84236	11.139	5	0	Median	1.1122	1.0368	11.856	4	0	Median	0.85694	0.90773	14.936	3	0	Median	4624200000	2311900000	2312400000	596160000	273910000	322250000	979460000	567030000	412430000	1505000000	721470000	783510000	1543600000	749450000	794180000	1588	1372	1507	9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253;9254;9255	12459;12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476;12477;12478;12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490;12491;12492;12493;12494	12473			36	
AFAMTNQILVEK	1	Oxidation (M)	1379.7119	0.71188683	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.3		5	4				2	4	2	5	4	2	6	54.884	50.067	2	2.4395E-06	27450	160513_QHF_FH_JSI10Kac_4	104.22	77.549			0.99583	1.025	130.9	12	10	Median	1.1687	1.0055	18.225	2	2	Median	0.36455	0.44052	118.52	3	2	Plateau	0.46451	0.44461	130.48	2	2	Median	0.86485	0.93919	181.84	5	4	Median	1283100000	1151900000	131210000	27361000	12836000	14524000	107840000	90853000	16988000	178550000	146870000	31676000	969340000	901320000	68021000	1589	1372	1507	9256;9257;9258;9259;9260;9261;9262;9263;9264;9265;9266;9267;9268;9269;9270;9271;9272	12495;12496;12497;12498;12499;12500;12501;12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513	12499		1006	19	
AFANLRK	1	Acetyl (Protein N-term)	860.48684	0.48683634	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.62	3	4	4					1	2	3	3	4	4	37.246	34.582	2	0.00045109	28226	160511_QHF_FH_JSI9i_3	94.669	71.74			1.0825	1.0847	10.46	14	0	Median	1.3109	1.0612	11.299	3	0	Plateau	0.87589	1.0312	10.475	3	0	Plateau	1.164	1.1522	7.7574	4	0	Median	0.96891	1.0713	12.821	4	0	Median	4493300000	2214900000	2278400000	1618400000	712420000	905960000	1532000000	855520000	676460000	896580000	437550000	459030000	446330000	209410000	236920000	1590	309	1508	9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286	12514;12515;12516;12517;12518;12519;12520;12521;12522;12523;12524;12525;12526;12527;12528;12529;12530;12531	12524			18	
AFANPEDALR	0	Unmodified	1102.5407	0.5407224	189	O14684	PTGES	Prostaglandin E synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.5	6.02	3	1					2			1	2	2	1	50.038	46.067	2	0.0011375	39976	160511_QHF_FH_JSI11i_2	78.334	65.298			1.0043	1.0514	8.5822	6	1	Median	1.2597	1.0296	NaN	1	0	Median	0.89611	1.0654	0.9461	2	0	Median	1.0043	1.0012	5.9908	2	1	Median	1.1506	1.245	NaN	1	0	Median	696510000	341170000	355340000	104300000	46435000	57868000	225580000	103230000	122350000	362360000	189450000	172900000	4276000	2054200	2221800	1591	189	1509	9287;9288;9289;9290;9291;9292	12532;12533;12534;12535;12536	12534			4	
AFAQLHGK	1	Unmodified	870.47119	0.47118627	86	D6RIA3	LOC285556		yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	12.279	11.878	3	0.044682	8954	160511_QHF_FH_JSI12i_3	16.54	12.184			0.88021	0.78283	26.663	2	0	Median	1.1936	0.94525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64911	0.64832	NaN	1	0	Median	1899400000	1122900000	776500000	457800000	185400000	272400000	0	0	0	0	0	0	1441600000	937500000	504100000	1592	86	1510	9293;9294	12537;12538	12538			2	
AFATAFLSSEPR	0	Unmodified	1295.651	0.65100113	3157	Q6UX07	DHRS13	Dehydrogenase/reductase SDR family member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			64.31	62.806	2	2.6835E-07	51535	160511_QHF_FH_JSI9i_3	129.85	114.7			0.83555	0.99305	29.149	3	2	Median	1.6638	1.365	NaN	1	0	Median	0.75432	0.87025	18.667	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61611000	33227000	28384000	20732000	10335000	10397000	40879000	22892000	17987000	0	0	0	0	0	0	1593	3157	1511	9295;9296;9297	12539;12540;12541	12541			3	
AFAVGVQQVLLK	1	Unmodified	1271.7602	0.76015765	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.59	1	4	4					3	4	4	4	4	4	78.938	74.416	2	7.5491E-54	69061	160511_QHF_FH_JSI11i_3	223.83	150.57			1.0377	0.98899	13.997	8	0	Median	1.2172	1.0157	2.1005	2	0	Median	0.93074	1.083	18.819	2	0	Median	0.99173	0.93129	6.8303	2	0	Median	0.95188	1.0008	27.129	2	0	Median	5403400000	2672500000	2730900000	964870000	375570000	589300000	1055000000	538470000	516500000	1372100000	687950000	684180000	2011400000	1070500000	940930000	1594	686	1512	9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312;9313	12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558;12559;12560;12561;12562;12563;12564;12565;12566;12567;12568;12569	12544			28	
AFAYTWFNLQAR	0	Unmodified	1486.7357	0.73573382	912;2315	P08651;Q12857	NFIC;NFIA	Nuclear factor 1 C-type;Nuclear factor 1 A-type	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	85.175	77.102	2;3	3.6211E-148	40861	160513_QHF_FH_JSI12Kac_6	294.36	271.71			1.0782	1.033	11.187	4	0	Median	1.305	1.1141	17.301	2	0	Median	0.85076	1.0016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0043	1.0654	NaN	1	0	Median	901140000	435420000	465730000	432010000	191220000	240790000	131900000	75383000	56521000	0	0	0	337230000	168810000	168420000	1595	912;2315	1513	9314;9315;9316;9317	12570;12571;12572;12573;12574	12572			3	
AFCEPGNVENNGVLSFIK	1	Unmodified	1993.9568	0.95676156	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	1	3	85.332	84.843	2;3	1.6538E-06	78169	160511_QHF_FH_JSI10i_2	108.59	94.689			0.74988	0.85233	62.033	5	5	Median	NaN	NaN	NaN	0	0	Median	0.68923	0.85233	NaN	1	1	Median	0.74988	0.75349	NaN	1	1	Median	0.82619	0.90625	82.841	3	3	Median	208060000	103170000	104890000	0	0	0	23873000	13803000	10070000	33958000	21977000	11980000	150230000	67391000	82843000	1596	1823	1514	9318;9319;9320;9321;9322	12575;12576;12577;12578;12579;12580;12581;12582	12579			8	
AFDCPETEYPVK	1	Unmodified	1454.6388	0.63878147	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.968	45.474	2	0.00026911	41039	160511_QHF_FH_JSI11i_1	76.143	68.762			0.40032	0.47173	44.496	3	2	Median	NaN	NaN	NaN	0	0	Median	0.40032	0.47173	NaN	1	1	Median	0.30768	0.29734	NaN	1	0	Median	0.69732	0.72385	NaN	1	1	Median	168330000	118950000	49385000	0	0	0	37726000	25057000	12669000	79410000	66196000	13214000	51196000	27694000	23503000	1597	387	1515	9323;9324;9325	12583;12584;12585	12583			3	
AFDFLSEETEASLASRR	0	Unmodified	1927.9276	0.92756992	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				75.25	73.795	3	0.032995	60641	160511_QHF_FH_JSI9i_3	24.287	14.499			1.9354	1.6367	NaN	1	1	Median	1.9354	1.6367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10486000	2441300	8044700	10486000	2441300	8044700	0	0	0	0	0	0	0	0	0	1598	404	1516	9326	12586	12586			1	
AFDLFNPNFK	1	Unmodified	1211.5975	0.597509	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	82.119	81.622	2	1.6031E-07	72052	160511_QHF_FH_JSI9i_2	119.21	107.36			1.0993	1.1035	27.658	7	3	Median	1.0503	0.89806	NaN	1	0	Median	0.71149	0.85408	NaN	1	0	Median	1.3651	1.329	26.298	2	1	Median	1.2318	1.2486	27.76	3	2	Median	571480000	254710000	316770000	76787000	27726000	49061000	148300000	81675000	66622000	168840000	67304000	101540000	177550000	78009000	99545000	1599	5591	1517	9327;9328;9329;9330;9331;9332;9333;9334	12587;12588;12589;12590;12591;12592;12593;12594;12595;12596;12597;12598;12599;12600	12593			14	
AFDLIVDRPVTLVR	0	Unmodified	1612.9301	0.93007653	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.4	0.49		3	2							2	2	1		81.445	80.517	3	1.1575E-06	67476	160511_QHF_FH_JSI10i_3	116.84	105.57			0.95593	1.0583	17.636	5	3	Median	1.3344	1.1145	7.321	2	2	Median	0.82432	0.994	19.635	2	1	Median	0.78388	0.78735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277750000	136170000	141580000	135120000	59860000	75263000	114070000	62541000	51525000	28561000	13765000	14795000	0	0	0	1600	750	1518	9335;9336;9337;9338;9339	12601;12602;12603;12604;12605	12601			5	
AFDLVPPEAVPEQK	1	Unmodified	1538.7981	0.7980593	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	72.165	71.565	2;3	0.0002196	65095	160511_QHF_FH_JSI11i_1	52.527	46.05			0.85918	0.88083	39.963	5	1	Median	0.73444	0.58334	64.016	2	1	Median	0.82856	0.97273	NaN	1	0	Median	0.85918	0.82582	NaN	1	0	Median	0.86336	0.88083	NaN	1	0	Median	161720000	90348000	71377000	64744000	35309000	29435000	28719000	15956000	12763000	35564000	20977000	14587000	32698000	18106000	14593000	1601	4080	1519	9340;9341;9342;9343;9344	12606;12607;12608;12609;12610	12606			5	
AFDMISQR	0	Unmodified	966.4593	0.45930096	217	O14908	GIPC1	PDZ domain-containing protein GIPC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	39.6	38.642	2	0.0066395	33118	160511_QHF_FH_JSI11i_2	61.962	43.232			1.0679	1.1282	2.6071	4	0	Median	1.2886	1.1263	NaN	1	0	Median	0.91127	1.1302	NaN	1	0	Median	1.0813	1.092	NaN	1	0	Median	1.0546	1.1639	NaN	1	0	Median	311160000	150810000	160360000	57633000	24755000	32878000	69284000	33921000	35363000	109530000	47697000	61837000	74713000	44435000	30279000	1602	217	1520	9345;9346;9347;9348	12611;12612;12613;12614	12613			4	
AFDSGIIPMEFVNK	1	Unmodified	1566.7752	0.77521537	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	3.22	8	3	5					1		5	4	5	3	92.464	91.328	2;3	3.9905E-52	83807	160511_QHF_FH_JSI10i_1	220.25	203.58			0.96701	1.0008	24.028	16	2	Median	1.1728	0.99228	11.97	5	0	Median	0.88248	1.033	5.3912	4	0	Median	1.0378	1.0195	47.48	4	1	Median	0.96817	0.99041	8.4932	3	1	Median	1088300000	556320000	531960000	211010000	95868000	115140000	350820000	195510000	155320000	295560000	143040000	152520000	230890000	121910000	108980000	1603	1798	1521	9349;9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363;9364;9365	12615;12616;12617;12618;12619;12620;12621;12622;12623;12624;12625;12626;12627;12628;12629;12630;12631;12632;12633;12634;12635;12636;12637;12638;12639;12640;12641;12642;12643;12644;12645;12646;12647;12648;12649;12650;12651;12652;12653	12634			39	
AFDSGIIPMEFVNK	1	Oxidation (M)	1582.7701	0.77012999	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1			1	2	1	79.949	76.679	2	0.00045559	69797	160511_QHF_FH_JSI10i_2	113.63	92.759			1.0142	1.1158	20.553	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0192	1.2603	NaN	1	1	Median	0.94432	0.92838	8.7882	2	1	Median	1.2641	1.3533	NaN	1	1	Median	125440000	58439000	67000000	0	0	0	29359000	15656000	13702000	55599000	24484000	31115000	40482000	18299000	22184000	1604	1798	1521	9366;9367;9368;9369	12654;12655;12656;12657	12657		1472	4	
AFDTAGNGYCR	0	Unmodified	1230.5088	0.50877035	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	5.26	5	4	1				3			1	3	4	5	25.62	21.983	2	3.7491E-40	18507	160511_QHF_FH_JSI11i_2	211.48	186.56			0.90364	1.0857	25.151	6	0	Median	1.5515	1.3262	NaN	1	0	Median	0.90364	1.0857	0.31036	2	0	Median	0.77855	0.78473	14.566	2	0	Median	1.2194	1.3648	NaN	1	0	Median	364910000	195590000	169320000	55541000	25290000	30251000	63497000	38469000	25028000	161020000	96502000	64519000	84849000	35329000	49520000	1605	1650	1522	9370;9371;9372;9373;9374;9375;9376;9377;9378;9379;9380;9381;9382	12658;12659;12660;12661;12662;12663;12664;12665;12666;12667;12668;12669;12670;12671;12672;12673;12674	12670			17	
AFDVPDAEAR	0	Unmodified	1089.5091	0.50908792	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.997	39.367	2	0.0013222	35751	160511_QHF_FH_JSI12i_1	66.568	54.04			1.3939	1.2709	12.645	4	2	Median	1.4257	1.1841	NaN	1	1	Median	0.93849	1.0813	NaN	1	1	Median	1.3909	1.3639	NaN	1	0	Median	1.397	1.4212	NaN	1	0	Median	357620000	153890000	203730000	45553000	19478000	26075000	85844000	40133000	45711000	139220000	53282000	85934000	87011000	40998000	46013000	1606	4237	1523	9383;9384;9385;9386	12675;12676;12677;12678	12676			4	
AFDYFNLAANAGNSHAMAFLGK	1	Unmodified	2329.095	0.094986378	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	97.796	97.651	3	6.2196E-47	84315	160511_QHF_FH_JSI12i_3	207.07	192.46			1.018	0.97867	12.142	4	0	Median	1.3296	1.1262	NaN	1	0	Median	0.75378	0.83862	NaN	1	0	Median	1.0409	0.96038	NaN	1	0	Median	0.99554	0.99731	NaN	1	0	Median	171880000	72106000	99777000	11598000	4287500	7311000	20264000	10956000	9307900	46953000	17069000	29885000	93067000	39794000	53273000	1607	5258	1524	9387;9388;9389;9390	12679;12680;12681;12682;12683;12684;12685	12685			7	
AFEALLSNIVKPVASDIQAR	1	Unmodified	2141.1845	0.18445331	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			100.99	100.81	3	4.4067E-11	81738	160511_QHF_FH_JSI9i_3	123.53	97.386			0.54578	0.53689	39.119	2	2	Median	0.85068	0.70798	NaN	1	1	Median	0.35016	0.40715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104060000	68897000	35163000	46144000	26365000	19779000	57915000	42532000	15383000	0	0	0	0	0	0	1608	5520	1525	9391;9392	12686;12687	12687			2	
AFEAVDK	1	Unmodified	778.38612	0.38611924	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.123	17.637	2	0.036067	15109	160511_QHF_FH_JSI12i_1	49.325	4.6331			1.3007	1.265	7.4543	4	0	Median	1.4217	1.175	NaN	1	0	Median	1.0627	1.2583	NaN	1	0	Median	1.4225	1.4078	NaN	1	0	Median	1.1899	1.2718	NaN	1	0	Median	1523600000	692600000	830990000	321200000	150160000	171050000	407680000	191690000	215990000	438500000	202740000	235760000	356210000	148010000	208200000	1609	587	1526	9393;9394;9395;9396	12688	12688			1	
AFEAVDKAYK	2	Acetyl (K)	1182.5921	0.59208927	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		53.483	42.685	2	0.0095743	24849	160513_QHF_FH_JSI11Kac_4	68.735	61.167			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1337100	1337100	0	0	0	0	0	0	0	1337100	1337100	0	0	0	0	1610	587	1527	9397	12689	12689	302		1	
AFEDEKK	2	Unmodified	865.41815	0.41814765	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.493	2	9	1							2	4	3	3	6.2063	5.8793	2;3	0.0020661	3853	160511_QHF_FH_JSI9i_2	113.89	35.273			0.99788	1.0691	63.458	12	4	Median	1.2315	1.0691	6.2754	2	0	Median	0.87147	1.0484	75.724	4	1	Median	0.89767	0.92107	80.216	3	1	Median	1.0215	1.1499	76.636	3	2	Median	3855000000	1435000000	2420000000	460150000	189770000	270380000	2055800000	587050000	1468800000	781130000	380790000	400340000	557870000	277340000	280520000	1611	5475	1528	9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409	12690;12691;12692;12693;12694;12695;12696;12697;12698;12699	12693			10	
AFEDELR	0	Unmodified	878.4134	0.41339662	995	P11277	SPTB	Spectrin beta chain, erythrocytic	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.003	60.349	2	0.029706	54853	160511_QHF_FH_JSI12i_1	54.525	38.371			0.085566	0.084838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.085566	0.084838	NaN	1	1	Median	13610000	13075000	535370	0	0	0	0	0	0	0	0	0	13610000	13075000	535370	1612	995	1529	9410	12700	12700			1	
AFEDEMK	1	Unmodified	868.36367	0.36366924	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.618	21.097	2	0.011246	18076	160511_QHF_FH_JSI11i_1	71.342	61.593			1.3093	1.3952	18.761	4	0	Median	1.3237	1.0988	NaN	1	0	Median	1.295	1.5376	NaN	1	0	Median	1.6944	1.6623	NaN	1	0	Median	1.2292	1.266	NaN	1	0	Median	671660000	314040000	357610000	161630000	76605000	85026000	133050000	66850000	66198000	185570000	81680000	103890000	191410000	88907000	102500000	1613	5722	1530	9411;9412;9413;9414	12701;12702	12701			2	
AFEDEMKK	2	Unmodified	996.45863	0.45863226	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS		2	0		2										2		16.571	16.317	2;3	0.0024391	13136	160511_QHF_FH_JSI11i_2	57.96	49.097			1.0742	1.0724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.0724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51119000	24328000	26791000	0	0	0	0	0	0	51119000	24328000	26791000	0	0	0	1614	5722	1531	9415;9416	12703;12704	12704			2	
AFEDTLQLMER	0	Unmodified	1351.6442	0.6442012	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.06	68.763	2	1.9494E-05	59287	160511_QHF_FH_JSI12i_2	105.86	86.548			0.92633	1.0144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92633	1.0144	NaN	1	1	Median	60755000	32647000	28108000	0	0	0	0	0	0	0	0	0	60755000	32647000	28108000	1615	648	1532	9417	12705	12705			1	
AFEEAEK	1	Unmodified	822.37595	0.37594848	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.22	3	3				1	1			1	2	2	3	12.064	9.9896	2	0.0026172	6198	160513_QHF_FH_JSI12Kac_4	102.71	86.56			0.93742	1.0121	12.086	8	1	Median	1.1452	0.97466	NaN	1	0	Median	0.92603	1.133	8.2597	2	0	Median	0.91397	0.91396	21.275	2	1	Median	0.92154	0.98239	3.483	3	0	Median	6841700000	3626000000	3215600000	81803000	38444000	43359000	2451900000	1322800000	1129100000	2189700000	1139600000	1050100000	2118300000	1125200000	993070000	1616	1846	1533	9418;9419;9420;9421;9422;9423;9424;9425	12706;12707;12708;12709;12710;12711;12712	12711			7	
AFEEEQNLR	0	Unmodified	1134.5306	0.53055165	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.18	4	4	2				3			3	4	3	3	28.074	25.175	2	3.4941E-16	22245	160511_QHF_FH_JSI10i_1	170.66	127.42			0.96928	1.048	11.334	12	1	Median	1.3313	1.098	3.3698	3	1	Median	1.0219	1.2794	14.932	3	0	Plateau	0.99176	0.94868	8.974	3	0	Median	0.86073	0.94921	6.9401	3	0	Plateau	5950300000	2984700000	2965600000	1224500000	530590000	693900000	1449200000	749350000	699850000	1711600000	890820000	820730000	1565100000	813930000	751130000	1617	1395	1534	9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438	12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735	12723			23	
AFEGQAHGADR	0	Unmodified	1157.5214	0.52138394	987	P11169;Q8TDB8	SLC2A3;SLC2A14	Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.97		8	4					3	2	4	2	5	6	7.8413	5.5845	2;3	5.4179E-10	5235	160511_QHF_FH_JSI10i_2	138.76	112.16			1.1313	1.1415	15.335	16	0	Median	1.057	0.89668	24.388	3	0	Plateau	0.76632	0.93704	3.1845	2	0	Median	1.2059	1.1864	3.0301	5	0	Median	1.1008	1.1259	15.682	6	0	Median	4397600000	2293200000	2104400000	442390000	206980000	235420000	758510000	458530000	299980000	1344100000	664900000	679160000	1852700000	962840000	889840000	1618	987	1535	9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455	12736;12737;12738;12739;12740;12741;12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759;12760;12761;12762	12756			27	
AFEHLQQLELIK	1	Unmodified	1467.8086	0.80856441	394	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	67.054	67.054	3	2.1563E-06	58108	160511_QHF_FH_JSI12i_3	98.105	74.879			2.672	2.5555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.672	2.5555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18479000	6769300	11709000	0	0	0	0	0	0	18479000	6769300	11709000	0	0	0	1619	394	1536	9456;9457	12763;12764	12764			2	
AFEKELSHATIDSK	2	Acetyl (K)	1616.8046	0.80460124	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		55.939	45.116	2	0.02949	24844	160513_QHF_FH_JSI11Kac_5	54.471	36.662			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1411700	1411700	0	0	0	0	0	0	0	1411700	1411700	0	0	0	0	1620	5495	1537	9458	12765	12765			1	
AFEKNIFNK	2	Acetyl (K)	1151.5975	0.597509	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		67.775	56.82	2	6.4947E-07	30668	160513_QHF_FH_JSI11Kac_5	135.79	119.01			0.4497	0.44074	54.155	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4497	0.44074	54.155	2	1	Median	NaN	NaN	NaN	0	0	Median	22820000	16438000	6381800	0	0	0	0	0	0	22820000	16438000	6381800	0	0	0	1621	1966	1538	9459;9460	12766;12767	12767	1985;1986		2	
AFELLHLHLDLR	0	Unmodified	1475.8249	0.82488317	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.485	76.892	4	7.0702E-09	42535	160513_QHF_FH_JSI10Kac_6	111.39	98.251			0.69571	0.82748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69571	0.82748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28299000	15546000	12753000	0	0	0	28299000	15546000	12753000	0	0	0	0	0	0	1622	4715	1539	9461	12768	12768			1	
AFELMHSGK	1	Unmodified	1018.4906	0.49060109	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	5.69		9	5						4	5	3	5	5	31.744	29.178	2;3	3.5446E-05	24746	160511_QHF_FH_JSI11i_3	118.5	78.227			1.1276	1.1432	35.385	18	2	Median	1.3276	1.0947	63.346	5	1	Median	1.0528	1.3208	16.9	3	0	Median	1.1819	1.1622	23.775	5	1	Median	1.0679	1.1262	18.556	5	0	Median	4591100000	2056600000	2534500000	444710000	172500000	272210000	400980000	181350000	219640000	1537000000	761140000	775830000	2208400000	941580000	1266800000	1623	1006	1540	9462;9463;9464;9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479	12769;12770;12771;12772;12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787;12788;12789;12790;12791	12772			22	
AFELMHSGK	1	Oxidation (M)	1034.4855	0.48551571	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	22.878	22.897	2;3	0.010073	24955	160511_QHF_FH_JSI11i_3	38.804	33.625			0.8283	0.81924	77.591	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49789	0.4733	NaN	1	0	Median	1.378	1.418	NaN	1	0	Median	246780000	110400000	136380000	0	0	0	0	0	0	129130000	58249000	70884000	117650000	52147000	65501000	1624	1006	1540	9480;9481;9482	12792;12793;12794	12792		591	3	
AFELTHTEVVER	0	Unmodified	1429.7201	0.72014333	3529	Q8N4P6	LRRC71	Leucine-rich repeat-containing protein 71	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	103.34	100.23	2	0.00019453	92608	160511_QHF_FH_JSI10i_2	96.711	82.037			0.039605	0.041444	13.028	7	7	Median	0.042053	0.036223	NaN	1	1	Median	0.03711	0.045475	13.128	2	2	Median	0.038136	0.037381	13.317	2	2	Median	0.04189	0.044267	4.0132	2	2	Median	2827700000	2764700000	62961000	371770000	362470000	9296300	631250000	616520000	14731000	867120000	848620000	18508000	957540000	937110000	20425000	1625	3529	1541	9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493	12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805	12801			11	
AFEPATGR	0	Unmodified	847.41882	0.41881635	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	3	1	2	15.023	14.503	2	0.00081956	11949	160511_QHF_FH_JSI9i_2	97.798	26.886			1.2445	1.3682	8.1975	7	1	Median	1.5158	1.263	NaN	1	0	Median	1.0908	1.3682	9.6058	3	1	Median	1.3112	1.373	NaN	1	0	Median	1.2754	1.3518	13.113	2	0	Median	2930000000	1269200000	1660700000	597860000	255570000	342290000	921250000	351510000	569740000	735960000	320310000	415640000	674910000	341840000	333070000	1626	1645	1542	9494;9495;9496;9497;9498;9499;9500	12806;12807;12808;12809;12810;12811;12812;12813;12814;12815	12810			10	
AFEQLMTDLTLSR	0	Unmodified	1523.7654	0.76537896	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	89.937	89.286	2	8.2871E-05	77075	160511_QHF_FH_JSI12i_2	113.47	98.207			0.92049	0.77934	18.24	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.60803	0.77934	NaN	1	1	Median	0.92339	0.95794	NaN	1	0	Median	0.62531	0.66586	NaN	1	1	Median	50091000	27822000	22269000	0	0	0	13161000	7783800	5377500	22753000	10867000	11885000	14177000	9170500	5006100	1627	3144	1543	9501;9502;9503	12816;12817;12818;12819	12816			4	
AFESDVFHNR	0	Unmodified	1220.5574	0.5574351	172	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	33.905	33.375	2;3	0.0062388	28227	160511_QHF_FH_JSI12i_3	62.582	55.102			0.34055	0.38996	56.807	2	2	Median	NaN	NaN	NaN	0	0	Median	0.47472	0.58274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2443	0.26096	NaN	1	1	Median	66205000	44834000	21372000	0	0	0	45633000	30163000	15470000	0	0	0	20572000	14670000	5901600	1628	172	1544	9504;9505	12820;12821	12821			2	
AFEVSENGNLVVSGK	1	Unmodified	1548.7784	0.77838649	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.645	7	4	1							2	4	2	4	57.347	56.605	2	1.5849E-45	50995	160511_QHF_FH_JSI10i_1	256.52	207.73			0.58492	0.6107	13.161	10	7	Median	0.67675	0.57792	6.2099	2	1	Median	0.55387	0.67631	5.1583	3	2	Median	0.539	0.53632	8.9274	2	2	Median	0.58078	0.6176	17.799	3	2	Median	1659400000	1008700000	650690000	230230000	136080000	94153000	581080000	366740000	214340000	300820000	198340000	102480000	547300000	307590000	239720000	1629	1650	1545	9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517	12822;12823;12824;12825;12826;12827;12828;12829;12830;12831;12832;12833;12834;12835;12836;12837;12838	12829			17	
AFFAGSQR	0	Unmodified	882.4348	0.43480077	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.55		2	4					1	4	4	2	3	2	26.15	21.797	2	2.5271E-17	18224	160511_QHF_FH_JSI10i_3	183.43	114.04			1.1145	1.0714	17.464	11	0	Median	1.101	0.9145	10.422	4	0	Linear	0.89439	1.0461	3.3805	2	0	Median	1.0944	1.0555	22.122	3	0	Plateau	0.88594	0.93987	25.436	2	0	Median	2218000000	1096300000	1121700000	900730000	421900000	478820000	661960000	355890000	306070000	461030000	213680000	247350000	194270000	104850000	89422000	1630	2569	1546	9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528	12839;12840;12841;12842;12843;12844;12845;12846;12847;12848	12840			10	
AFFESHPAPSAER	0	Unmodified	1444.6735	0.67352749	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.44		4	8						7	6	6	4	3	32.598	29.071	2;3	1.5682E-82	25049	160511_QHF_FH_JSI11i_3	265.01	220.69			0.93119	0.95759	16.892	18	2	Median	1.1743	1.0356	17.533	6	0	Median	0.7227	0.87633	9.025	6	1	Median	0.93138	0.87507	27.355	3	0	Median	0.93101	0.96608	2.4002	3	1	Plateau	3458100000	1758400000	1699600000	622650000	268010000	354640000	1253900000	696880000	556990000	1112100000	552200000	559920000	469410000	241320000	228090000	1631	1862	1547	9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547	12849;12850;12851;12852;12853;12854;12855;12856;12857;12858;12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871;12872;12873;12874;12875;12876;12877	12852			29	
AFFFPSFNVR	0	Unmodified	1230.6186	0.61857879	3737	Q8TEQ8	PIGO	GPI ethanolamine phosphate transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			95.312	94.504	2	0.0075659	78732	160511_QHF_FH_JSI10i_3	60.973	48.747			1.0073	1.2269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0073	1.2269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6667800	3342500	3325300	0	0	0	6667800	3342500	3325300	0	0	0	0	0	0	1632	3737	1548	9548;9549	12878;12879	12878			2	
AFFKGAWSNVLR	1	Acetyl (K)	1436.7565	0.75646926	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	1	0	0	1	By matching		By matching	By MS/MS	16	0									3	1		1	1	85.191	76.066	2	1.0344E-30	40565	160513_QHF_FH_JSI12Kac_6	180.97	133.37			0.60949	0.56865	17.637	3	0	Plateau	0.76172	0.65518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59379	0.56865	NaN	1	0	Median	0.76432	0.80744	NaN	1	0	Median	1260100000	769600000	490490000	374680000	234700000	139980000	0	0	0	618160000	386630000	231530000	267250000	148270000	118980000	1633	1014;826;1013	1549	9550;9551;9552	12880;12881	12880	473;814		2	
AFFMLDGILSK	1	Unmodified	1240.6526	0.65258104	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	2	1	96.905	92.89	2	7.0676E-18	88090	160511_QHF_FH_JSI12i_3	178.22	114.74			0.92632	0.96822	19.567	6	0	Median	0.93755	0.81054	NaN	1	0	Median	0.65567	0.77684	32.357	2	0	Median	1.0794	1.0121	4.9295	2	0	Median	0.91521	0.95995	NaN	1	0	Median	1174200000	626840000	547380000	45907000	21351000	24556000	317160000	171480000	145680000	262460000	133620000	128840000	548680000	300380000	248300000	1634	907	1550	9553;9554;9555;9556;9557;9558	12882;12883;12884;12885;12886;12887	12886			6	
AFFPCFDTPAVK	1	Unmodified	1398.6642	0.66420836	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.617	1	6	4							2	2	4	3	80.308	79.78	2;3	3.255E-07	70075	160511_QHF_FH_JSI11i_2	127.4	113.19			0.91581	0.91565	16.706	10	6	Median	0.91581	0.78593	3.5992	2	2	Median	0.78157	0.95063	NaN	1	0	Median	0.92794	0.88606	19.496	4	2	Median	0.98781	0.98714	16.009	3	2	Median	846520000	420800000	425720000	111900000	61761000	50142000	122480000	65600000	56877000	315620000	151400000	164210000	296520000	142030000	154490000	1635	4715	1551	9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569	12888;12889;12890;12891;12892;12893;12894;12895;12896;12897;12898;12899;12900;12901;12902	12897			15	
AFFSEVER	0	Unmodified	983.47125	0.47124585	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.84	3		2					3	2	2	3	2	3	46.18	40.662	2	0.00027047	33964	160511_QHF_FH_JSI10i_3	114.6	71.602			1.1981	1.2037	13.743	10	1	Median	1.4221	1.1694	4.1179	2	0	Median	1.0729	1.2716	17.718	3	0	Median	1.2615	1.2258	13.622	2	1	Median	1.1103	1.1638	14.826	3	0	Median	1222900000	536020000	686860000	185230000	67449000	117780000	679870000	325270000	354610000	257870000	96214000	161650000	99908000	47088000	52820000	1636	5475	1552	9570;9571;9572;9573;9574;9575;9576;9577;9578;9579	12903;12904;12905;12906;12907;12908;12909;12910;12911;12912;12913;12914;12915	12906			13	
AFFSEVERR	0	Unmodified	1139.5724	0.57235688	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			32.78	31.381	2	4.5003E-07	25616	160511_QHF_FH_JSI9i_3	118.32	71.991			0.9118	0.86809	19.952	2	2	Median	1.2353	0.99962	NaN	1	1	Median	0.67303	0.75387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58558000	30155000	28403000	36435000	17155000	19280000	22123000	13000000	9122800	0	0	0	0	0	0	1637	5475	1553	9580;9581;9582	12916;12917;12918	12918			3	
AFFSSYLK	1	Unmodified	961.49092	0.49091866	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	60.818	59.991	2	0.017275	51569	160511_QHF_FH_JSI12i_3	48.756	25.826			0.96146	1.0327	28.387	4	0	Median	1.6111	1.297	NaN	1	0	Median	0.98396	1.1046	NaN	1	0	Median	0.7154	0.66649	NaN	1	0	Median	0.93949	0.96537	NaN	1	0	Median	637810000	315040000	322770000	124730000	59894000	64840000	105880000	50123000	55756000	100840000	38282000	62556000	306360000	166740000	139620000	1638	3183	1554	9583;9584;9585;9586	12919;12920	12920			2	
AFGFSHLEALLDDSK	1	Unmodified	1648.8097	0.80968662	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			20							8	7	2	3	93.28	92.513	2;3	8.6872E-30	81196	160511_QHF_FH_JSI11i_3	189.24	166.33			0.88996	0.93905	28.022	17	5	Median	1.1994	0.99794	25.754	6	2	Median	0.73471	0.8174	33.971	7	2	Median	0.88187	0.83235	36.425	2	1	Median	0.79399	0.80151	15.563	2	0	Median	1040200000	471630000	568530000	120680000	52928000	67749000	176590000	94519000	82074000	285750000	122270000	163470000	457140000	201910000	255230000	1639	4077	1555	9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606	12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932;12933;12934;12935;12936;12937;12938;12939;12940;12941;12942;12943;12944;12945;12946;12947;12948	12922			27	
AFGGQSLK	1	Unmodified	806.42865	0.42865276	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.01	2	4	4					1	1	3	3	3	3	20.442	18.39	2	0.004134	15116	160511_QHF_FH_JSI10i_3	69.628	52.701			0.90549	0.99922	16.512	12	0	Median	1.3386	1.1086	8.1807	3	0	Median	0.8598	1.0258	0.82174	3	0	Plateau	0.91163	0.88881	11.63	3	0	Median	0.93688	0.98017	18.383	3	0	Plateau	6743600000	3473900000	3269700000	1025200000	488050000	537100000	1219400000	683520000	535920000	1648300000	858040000	790270000	2850700000	1444300000	1406400000	1640	1367	1556	9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617;9618	12949;12950;12951;12952;12953;12954;12955;12956;12957;12958;12959;12960;12961;12962;12963;12964;12965	12952			17	
AFGGQSLKFGK	2	Acetyl (K)	1180.6241	0.6240581	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	15.8	0.433								1	3		1	1	2	61.434	51.744	2	1.8293E-26	28041	160513_QHF_FH_JSI11Kac_6	175.73	94.184			0.57591	1.0121	39.749	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.89972	1.0677	NaN	1	0	Median	0.49214	0.46716	NaN	1	0	Median	0.92387	1.0121	5.3681	2	0	Median	111130000	70270000	40857000	0	0	0	30554000	18084000	12470000	51895000	35634000	16261000	28679000	16553000	12126000	1641	1367	1557	9619;9620;9621;9622	12966;12967;12968;12969;12970	12967	1298;1299		5	
AFGGVIFQK	1	Unmodified	965.53345	0.53345218	5667	Q9Y5L3	ENTPD2	Ectonucleoside triphosphate diphosphohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	57.177	56.065	2	0.0015825	46047	160511_QHF_FH_JSI9i_3	68.422	51.036			1.2053	1.0735	69.053	3	1	Median	1.2053	0.98374	NaN	1	0	Median	0.97226	1.0735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.4394	3.3903	NaN	1	1	Median	290680000	75517000	215160000	43033000	20811000	22221000	30249000	15979000	14270000	0	0	0	217390000	38727000	178670000	1642	5667	1558	9623;9624;9625	12971;12972;12973	12972			3	
AFGIPIR	0	Unmodified	772.45956	0.45955895	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.85	2	4	4						3	3	3	4	3	55.966	53.149	2	0.0042598	27820	160513_QHF_FH_JSI12Kac_6	98.03	48.719			0.90557	0.96592	21.418	13	0	Median	1.32	1.0588	33.697	3	0	Median	0.83751	1.0362	13.892	3	0	Plateau	0.96218	0.94661	6.8173	4	0	Median	0.83186	0.82878	8.4569	3	0	Plateau	5129500000	2492100000	2637400000	1163700000	446910000	716820000	1275300000	670810000	604450000	1121400000	529170000	592230000	1569100000	845210000	723930000	1643	850	1559	9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638	12974;12975;12976;12977;12978;12979;12980;12981;12982;12983;12984;12985;12986;12987;12988;12989;12990;12991	12991			18	
AFGIPVR	0	Unmodified	758.44391	0.44390889	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	45.752	44.899	2	0.0038684	38203	160511_QHF_FH_JSI12i_3	101.72	53.481			1.0029	0.99676	9.3553	4	1	Median	1.4477	1.1911	NaN	1	1	Median	0.87174	0.99511	NaN	1	0	Median	1.0573	0.99841	NaN	1	0	Median	0.95118	0.97401	NaN	1	0	Median	744710000	372200000	372510000	137220000	59409000	77816000	150580000	79405000	71173000	192210000	94752000	97456000	264700000	138640000	126060000	1644	2151	1560	9639;9640;9641;9642	12992;12993;12994;12995;12996;12997	12997			6	
AFGLVGK	1	Unmodified	690.40646	0.40646075	4207	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.718	2	5	7							4	3	4	3	35.404	34.748	1;2	0.0083088	29641	160511_QHF_FH_JSI10i_3	84.025	84.025			1.097	1.17	47.09	14	5	Median	1.6764	1.3558	49.662	4	1	Median	0.92653	1.0874	53.824	3	1	Median	1.3011	1.2724	57.556	4	2	Median	1.1056	1.143	31.115	3	1	Plateau	3478400000	1573500000	1904900000	753010000	331870000	421140000	400110000	167540000	232570000	998670000	410950000	587710000	1326600000	663140000	663470000	1645	4207	1561	9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656	12998;12999;13000;13001;13002;13003;13004;13005;13006;13007;13008;13009;13010;13011;13012;13013;13014	13002			17	
AFGPGLQGGSAGSPAR	0	Unmodified	1428.711	0.71097563	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.34	5	6	6				2	5	3	7	9	6	5	38.31	34.156	2;3	1.06E-51	29991	160511_QHF_FH_JSI11i_3	213.38	193.05			0.94396	0.99804	26.647	27	1	Median	1.1795	0.99579	7.3328	7	0	Median	0.86468	1.0049	38.408	9	1	Median	1.0024	0.9951	32.751	6	0	Median	0.85812	0.95718	6.6702	5	0	Median	7329600000	3523900000	3805700000	2273600000	939380000	1334200000	2530100000	1304200000	1225900000	1549300000	746000000	803330000	976530000	534350000	442180000	1646	1192	1562	9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683	13015;13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031;13032;13033;13034;13035;13036;13037;13038;13039;13040;13041;13042;13043;13044;13045;13046;13047;13048;13049;13050;13051;13052;13053	13015			38	
AFGQAKHQPTAIIAK	2	Acetyl (K)	1621.894	0.89402537	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.462								4	9	3	3	4	3	50.828	41.105	2;3	1.345E-23	22502	160513_QHF_FH_JSI10Kac_6	156.71	131.86			0.91603	0.93614	169	13	2	Median	1.2987	0.95854	8.6524	3	0	Plateau	1.0055	1.1905	7.8225	3	0	Median	0.41445	0.40902	332.71	4	2	Median	0.65862	0.69398	13.668	3	0	Median	1424300000	843370000	580890000	182210000	75171000	107030000	427710000	207380000	220340000	545310000	409990000	135310000	269040000	150830000	118210000	1647	1322	1563	9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696	13054;13055;13056;13057;13058;13059;13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071;13072;13073	13072	1244;1245		20	
AFGSGIDIKPGTPPIAGR	1	Unmodified	1752.9523	0.95226853	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				62.729	61.221	3	0.00067815	50212	160511_QHF_FH_JSI9i_3	61.815	50.376			0.99188	0.80452	NaN	1	1	Median	0.99188	0.80452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82227000	41446000	40781000	82227000	41446000	40781000	0	0	0	0	0	0	0	0	0	1648	5646	1564	9697	13074	13074			1	
AFGSGYR	0	Unmodified	756.35549	0.35548781	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	13.636	13.2	2	0.012406	10229	160511_QHF_FH_JSI12i_3	69.432	69.432			0.90139	0.88034	10.352	4	0	Median	1.164	0.93571	NaN	1	0	Median	0.65511	0.73647	NaN	1	0	Median	0.9281	0.87655	NaN	1	0	Median	0.87545	0.88414	NaN	1	0	Median	1803800000	908270000	895550000	645730000	269340000	376390000	420500000	256700000	163800000	408080000	205600000	202480000	329510000	176640000	152880000	1649	1237	1565	9698;9699;9700;9701	13075;13076;13077;13078;13079	13079			5	
AFGSTIVINPEK	1	Unmodified	1274.6871	0.68705229	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.77	4	3	2					3		2	3	4	3	59.317	55.949	2	6.196E-08	48038	160511_QHF_FH_JSI12i_3	138.71	118.93			1.0491	1.0667	24.292	11	5	Median	1.496	1.2647	NaN	1	1	Median	0.86031	1.0021	4.0446	3	1	Plateau	1.0195	0.97665	36.493	4	2	Median	1.0491	1.0923	13.708	3	1	Plateau	465140000	224270000	240870000	52651000	22632000	30020000	106750000	59159000	47586000	153160000	66818000	86346000	152580000	75662000	76915000	1650	2457	1566	9702;9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713	13080;13081;13082;13083;13084;13085;13086;13087;13088;13089	13089			10	
AFGVAFVK	1	Unmodified	837.47487	0.47487467	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	2	1	1	57.212	56.249	2	0.0014247	47961	160511_QHF_FH_JSI12i_3	89.673	59.005			1.0741	1.0785	27.275	6	1	Median	1.6341	1.3248	56.012	2	1	Median	0.89826	1.0781	3.1999	2	0	Median	1.1615	1.0984	NaN	1	0	Median	1.0457	1.0589	NaN	1	0	Median	1798500000	876280000	922210000	408500000	171710000	236790000	267820000	133230000	134590000	409340000	208930000	200410000	712820000	362400000	350420000	1651	4765	1567	9714;9715;9716;9717;9718;9719	13090;13091;13092;13093;13094;13095;13096;13097	13096			8	
AFGVPVR	0	Unmodified	744.42826	0.42825883	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		35.624	34.669	2	0.0093858	29531	160511_QHF_FH_JSI11i_2	69.093	52.926			17.412	21.421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17.412	21.421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	874280000	45961000	828320000	0	0	0	874280000	45961000	828320000	0	0	0	0	0	0	1652	1252	1568	9720;9721	13098;13099	13098			2	
AFGYVCGGEGQHQFFAIK	1	Unmodified	2014.936	0.93596654	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	1	2	2	71.667	67.996	3	8.9537E-15	36113	160513_QHF_FH_JSI11Kac_6	127.3	106.36			0.93084	0.92644	30.965	6	2	Median	1.0595	0.87462	NaN	1	0	Median	0.89146	1.0189	NaN	1	0	Median	0.79531	0.75786	31.715	2	1	Median	1.1671	1.198	39.668	2	1	Median	300200000	157280000	142920000	40905000	17635000	23270000	48807000	29918000	18889000	123780000	70913000	52864000	86715000	38817000	47898000	1653	2137	1569	9722;9723;9724;9725;9726;9727	13100;13101;13102;13103;13104;13105	13102			4	
AFGYYGPLR	0	Unmodified	1042.5236	0.52361577	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	57.512	53.834	2	9.6926E-17	27984	160513_QHF_FH_JSI12Kac_6	170.31	154.17			0.96407	1.0163	9.9059	12	1	Median	1.2104	1.0018	8.166	3	0	Median	0.89593	1.0656	4.0481	3	0	Median	1.0739	1.0252	2.5661	3	1	Median	0.77924	0.81709	7.6535	3	0	Plateau	10814000000	5020800000	5793300000	2516300000	1148900000	1367400000	2992600000	1503600000	1489000000	2645300000	1017500000	1627800000	2659900000	1350800000	1309100000	1654	2131	1570	9728;9729;9730;9731;9732;9733;9734;9735;9736;9737;9738;9739	13106;13107;13108;13109;13110;13111;13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122;13123	13120			17	
AFHGLAGGTDVPFSEVVK	1	Unmodified	1829.9312	0.93119874	492	O75191	XYLB	Xylulose kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.813	72.665	3	2.9721E-05	63031	160511_QHF_FH_JSI12i_3	72.797	62.601			0.85013	0.81236	53.514	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3182	1.186	NaN	1	1	Median	0.54827	0.55643	NaN	1	0	Median	96881000	60234000	36647000	0	0	0	0	0	0	33795000	18543000	15253000	63086000	41691000	21394000	1655	492	1571	9740;9741	13124;13125;13126	13126			3	
AFHITNDEPIPFWTFLSR	0	Unmodified	2190.0898	0.089824645	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.737	86.345	3	8.4116E-12	48404	160513_QHF_FH_JSI9Kac_6	123.14	116.76			1.0161	1.016	3.7536	4	0	Median	1.2112	1.0226	NaN	1	0	Median	0.79082	0.94966	NaN	1	0	Median	1.0637	1.0095	NaN	1	0	Median	0.9706	1.0322	NaN	1	0	Median	785490000	400060000	385430000	218190000	94096000	124090000	263600000	148980000	114630000	131400000	65399000	65996000	172300000	91589000	80709000	1656	2701	1572	9742;9743;9744;9745	13127;13128;13129;13130;13131	13128			5	
AFHIWSK	1	Unmodified	887.46537	0.46537261	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	43.066	38.526	3	0.0033377	32257	160511_QHF_FH_JSI12i_3	63.48	48.04			0.91558	0.99526	21.545	7	0	Median	1.6205	1.3332	6.5085	2	0	Median	0.83027	0.95216	NaN	1	0	Median	1.0416	1.0152	33.485	2	0	Median	0.8922	0.93204	9.2816	2	0	Median	272940000	133970000	138970000	60847000	24642000	36205000	49682000	28266000	21417000	65112000	26373000	38739000	97295000	54687000	42607000	1657	1542	1573	9746;9747;9748;9749;9750;9751;9752	13132;13133;13134;13135;13136;13137;13138;13139;13140;13141	13140			9	
AFHLLQK	1	Unmodified	855.49667	0.49667274	1651	P49336	CDK8	Cyclin-dependent kinase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	32.682	31.717	3	0.0032925	26374	160511_QHF_FH_JSI12i_3	64.776	10.251			0.81297	0.66909	37.284	3	3	Plateau	0.81297	0.66909	NaN	1	1	Median	0.85731	0.98318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4783	1.4102	NaN	1	1	Median	76966000	36964000	40002000	21983000	12799000	9183800	23822000	12283000	11538000	0	0	0	31162000	11882000	19280000	1658	1651	1574	9753;9754;9755	13142;13143;13144	13144			3	
AFHNEAQVNPER	0	Unmodified	1410.664	0.66402543	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	3.52		7	6						1	2	4	6	2	16.388	15.284	2;3	2.7261E-23	12608	160511_QHF_FH_JSI11i_3	180.97	166.76			0.7456	0.7809	20.035	13	1	Median	1.184	1.011	0.011079	2	0	Median	0.77348	0.91798	13.303	4	0	Median	0.70562	0.65678	21.397	5	1	Median	0.68197	0.70059	6.464	2	0	Median	1289400000	682180000	607200000	204060000	98065000	106000000	343310000	191490000	151820000	596340000	313160000	283180000	145670000	79468000	66205000	1659	1132	1575	9756;9757;9758;9759;9760;9761;9762;9763;9764;9765;9766;9767;9768;9769	13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165;13166	13146			22	
AFHNEAQVNPERK	1	Unmodified	1538.759	0.75898845	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	4.62		2	10						2	5	6	2	1	14.164	12.544	2;3;4	1.3326E-10	9973	160511_QHF_FH_JSI9i_3	172.34	158.53			0.75683	0.805	23.732	13	4	Median	1.1141	0.88851	5.243	4	0	Median	0.62877	0.73393	17.102	6	3	Median	0.51883	0.48515	15.942	2	1	Median	0.75683	0.82692	NaN	1	0	Median	2584100000	1374100000	1209900000	959330000	448500000	510830000	1254500000	713760000	540720000	364980000	208670000	156310000	5271700	3219800	2051900	1660	1132	1576	9770;9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783	13167;13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181;13182;13183;13184;13185;13186;13187;13188	13180			22	
AFHPFIAGPYNR	0	Unmodified	1388.699	0.69895438	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	12.8	5.63			1						3		3		1	59.577	52.514	2;3	9.3958E-07	28867	160513_QHF_FH_JSI10Kac_6	123.92	52.694			0.86348	0.9653	38.091	4	2	Median	NaN	NaN	NaN	0	0	Median	0.85984	0.99537	46.225	3	2	Median	NaN	NaN	NaN	0	0	Median	0.86713	0.93613	NaN	1	0	Median	157510000	85864000	71644000	0	0	0	140020000	76755000	63260000	0	0	0	17493000	9109100	8383900	1661	2147	1577	9784;9785;9786;9787	13189;13190;13191;13192;13193	13193			5	
AFHPTYEEK	1	Unmodified	1120.5189	0.51892433	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		5	5						5	4	2	5	4	19.003	16.029	2;3	1.8895E-06	13178	160511_QHF_FH_JSI11i_3	128.69	87.657			1.0169	0.97441	19.148	15	1	Median	1.3762	1.1592	21.155	4	0	Median	0.74448	0.88278	6.8984	2	0	Median	1.1002	1.0228	25.234	5	0	Median	0.83163	0.86703	12.966	4	1	Median	1774600000	877570000	897050000	175180000	77472000	97703000	53330000	32871000	20459000	560480000	266670000	293810000	985640000	500560000	485080000	1662	4700	1578	9788;9789;9790;9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802	13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210	13197			17	
AFHPTYEEKLK	2	Acetyl (K)	1403.7085	0.70851601	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		49.698	39.996	3	5.3497E-05	21738	160513_QHF_FH_JSI11Kac_6	92.611	75.244			0.35003	0.34671	265.03	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35003	0.34671	265.03	2	2	Median	NaN	NaN	NaN	0	0	Median	10666000	7412700	3253500	0	0	0	0	0	0	10666000	7412700	3253500	0	0	0	1663	4700	1579	9803;9804	13211;13212;13213	13213	3218		3	
AFHSSLHESIQK	1	Unmodified	1382.6943	0.69426293	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			21.312	20.085	2;3	0.0004163	16544	160511_QHF_FH_JSI10i_3	73.082	68.909			1.1983	1.1381	43.932	2	2	Median	1.9148	1.5527	NaN	1	1	Median	0.74991	0.83416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76464000	34814000	41650000	45857000	15571000	30286000	30607000	19243000	11364000	0	0	0	0	0	0	1664	1239	1580	9805;9806;9807;9808	13214;13215;13216;13217	13214			4	
AFIANLK	1	Unmodified	775.45922	0.4592246	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	41.444	40.578	2	0.045601	33933	160511_QHF_FH_JSI10i_3	44.611	9.5054			0.90748	0.97431	10.817	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9345	1.0518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88125	0.90257	NaN	1	0	Median	97814000	52179000	45635000	0	0	0	31193000	16623000	14570000	0	0	0	66620000	35555000	31065000	1665	1549	1581	9809;9810	13218	13218			1	
AFIAVYYLLPK	1	Unmodified	1296.7482	0.74819598	669	O95273	CCNDBP1	Cyclin-D1-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.54	84.192	2	9.7548E-20	46854	160513_QHF_FH_JSI9Kac_6	163.77	144.5			0.94562	0.89958	26.218	4	0	Median	1.1766	0.99842	NaN	1	0	Median	1.0423	1.2334	NaN	1	0	Median	0.85793	0.81053	NaN	1	0	Median	0.639	0.67207	NaN	1	0	Median	710190000	382510000	327690000	159610000	77554000	82052000	221860000	117030000	104830000	222220000	121000000	101220000	106510000	66919000	39586000	1666	669	1582	9811;9812;9813;9814	13219;13220;13221;13222;13223;13224;13225;13226	13221			8	
AFIGFEGVK	1	Unmodified	966.51747	0.51746776	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.44	2	4	2					1	1	1	3	4	2	61.173	59.588	2	3.7951E-06	51130	160511_QHF_FH_JSI12i_2	121.62	95.017			1.0873	1.0843	18.616	9	1	Median	1.1699	1.0143	NaN	1	0	Median	0.78211	0.93055	0.16069	2	0	Median	1.1787	1.1685	15.252	4	1	Median	1.2715	1.3489	21.916	2	0	Median	2093700000	1018600000	1075100000	270030000	116280000	153740000	420640000	255060000	165580000	818770000	387880000	430880000	584290000	259390000	324900000	1667	1085	1583	9815;9816;9817;9818;9819;9820;9821;9822;9823;9824	13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242	13229			16	
AFIHWVSQPLMCEVR	0	Unmodified	1871.9175	0.9174797	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.905	71.621	3	1.5635E-07	38487	160513_QHF_FH_JSI9Kac_6	111.74	105.62			1.2317	1.1747	17.642	4	0	Median	1.3868	1.1982	NaN	1	0	Median	0.8712	1.041	NaN	1	0	Median	1.6266	1.5732	NaN	1	0	Median	1.0939	1.1517	NaN	1	0	Median	572700000	256620000	316080000	114120000	44889000	69230000	317250000	162960000	154290000	102730000	35904000	66827000	38598000	12864000	25734000	1668	1609	1584	9825;9826;9827;9828	13243;13244;13245;13246;13247	13244			4	
AFIIQHFADK	1	Unmodified	1188.6291	0.62914348	5631	Q9Y4I1	MYO5A	Unconventional myosin-Va	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			52.967	51.405	2	0.0050947	42976	160511_QHF_FH_JSI10i_3	56.563	26.754			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1669	5631	1585	9829	13248	13248			1	
AFIISFK	1	Unmodified	824.47963	0.47962569	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	73.053	68.679	2	0.010057	36222	160513_QHF_FH_JSI9Kac_6	83.614	29.089			0.99891	1.005	10.926	7	0	Median	1.2951	1.1018	2.7627	2	0	Median	0.87018	1.005	NaN	1	0	Median	1.0618	1.0026	9.2702	2	0	Median	0.82703	0.86126	0.94973	2	0	Median	1036100000	543740000	492400000	353200000	169420000	183790000	115390000	61761000	53629000	278850000	160940000	117910000	288700000	151620000	137080000	1670	4821	1586	9830;9831;9832;9833;9834;9835;9836	13249;13250;13251;13252;13253	13251			5	
AFIITGQTYTR	0	Unmodified	1269.6717	0.67173657	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	15.8	0.433								1	3	1	2		1	61.095	51.572	2	6.7941E-05	28397	160513_QHF_FH_JSI10Kac_6	96.342	47.546			0.96869	1.0739	19.053	4	2	Median	1.4243	1.2313	NaN	1	1	Median	0.77192	0.91284	3.6268	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1909	1.2986	NaN	1	0	Median	105220000	54399000	50819000	45898000	20419000	25479000	50986000	30442000	20544000	0	0	0	8333800	3537500	4796200	1671	1359	1587	9837;9838;9839;9840	13254;13255;13256;13257;13258	13258			5	
AFIITLNSFGTELSK	1	Unmodified	1639.8821	0.88212328	3571	Q8N8Y2	ATP6V0D2	V-type proton ATPase subunit d 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			88.853	81.66	2	4.1466E-32	44802	160513_QHF_FH_JSI9Kac_6	210.79	0			0.59515	0.59546	10.579	4	4	Median	0.76981	0.65232	5.6524	2	2	Median	0.45926	0.55039	3.8832	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	869490000	572420000	297060000	321460000	190650000	130810000	548030000	381770000	166260000	0	0	0	0	0	0	1672	3571	1588	9841;9842;9843;9844	13259;13260;13261;13262	13260			4	
AFINLEAAGVGGK	1	Unmodified	1245.6717	0.67173657	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	64.646	63.996	2	3.4575E-12	53161	160511_QHF_FH_JSI10i_3	117.67	91.159			0.61594	0.65215	43.292	6	4	Median	0.60035	0.52326	NaN	1	1	Median	0.49382	0.59573	NaN	1	1	Median	0.81803	0.80556	65.566	2	1	Median	0.90821	0.96774	43.021	2	1	Median	744910000	433540000	311360000	124080000	76406000	47677000	116770000	74718000	42054000	262350000	148420000	113930000	241710000	134000000	107700000	1673	3248	1589	9845;9846;9847;9848;9849;9850;9851	13263;13264;13265;13266;13267;13268;13269;13270	13266			8	
AFIPAIDSFGFETDLR	0	Unmodified	1797.8938	0.8937506	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.53	101.45	2	1.0299E-11	87288	160511_QHF_FH_JSI12i_2	113.65	89.267			1.0106	1.0307	8.0827	3	0	Median	1.3264	1.1272	NaN	1	0	Median	0.77451	0.95927	NaN	1	0	Median	1.0106	1.0307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	525130000	273120000	252010000	116170000	59855000	56313000	179550000	98961000	80589000	229410000	114300000	115110000	0	0	0	1674	2609	1590	9852;9853;9854;9855	13271;13272;13273	13271			3	
AFIPGGPSPGSR	0	Unmodified	1141.588	0.58800695	3669	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.75	0.433		1	3							1	2		1	38.76	37.732	2	8.2041E-05	31395	160511_QHF_FH_JSI10i_3	93.111	88.974			0.89272	1.0898	18.475	4	0	Median	1.3866	1.1574	NaN	1	0	Median	0.89272	1.0898	4.8773	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75865	0.77515	NaN	1	0	Median	292670000	140960000	151710000	101090000	37375000	63720000	150140000	80367000	69776000	0	0	0	41433000	23222000	18211000	1675	3669	1591	9856;9857;9858;9859	13274;13275;13276;13277;13278	13275			5	
AFIPQLLSR	0	Unmodified	1043.6128	0.61276513	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	2	2		73.643	72.726	2	0.00017327	59769	160511_QHF_FH_JSI9i_3	101.28	86.615			0.98257	0.98131	16.305	4	1	Median	1.0833	0.86409	NaN	1	0	Median	0.82912	0.98131	16.873	2	1	Median	1.2676	1.1866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	335390000	162810000	172580000	95034000	45980000	49054000	135500000	69051000	66445000	104860000	47784000	57078000	0	0	0	1676	1060	1592	9860;9861;9862;9863;9864	13279;13280;13281;13282;13283	13281			5	
AFITNIPFDVK	1	Unmodified	1263.6863	0.68632401	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.68	1	4						4	4	3	3	4	3	84.975	78.988	2	6.9165E-30	75240	160511_QHF_FH_JSI9i_2	192.92	168.7			0.93291	0.95888	10.726	13	2	Median	1.1941	0.96518	8.4486	3	0	Median	0.80746	0.95888	5.368	3	0	Median	0.94353	0.91969	16.895	4	2	Median	0.8759	0.96393	11.992	3	0	Median	6024300000	3120600000	2903700000	1029700000	506160000	523500000	1466100000	843230000	622840000	2036300000	1048100000	988180000	1492300000	723140000	769140000	1677	1765	1593	9865;9866;9867;9868;9869;9870;9871;9872;9873;9874;9875;9876;9877	13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310	13293			26	
AFITNIPFDVKWQSLK	2	Acetyl (K)	1948.0458	0.045834566	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		95.045	85.653	2	4.1414E-05	48452	160513_QHF_FH_JSI11Kac_6	148.96	102.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26129000	26129000	0	0	0	0	0	0	0	26129000	26129000	0	0	0	0	1678	1765	1594	9878	13311	13311	1780		1	
AFIVTDEDIR	0	Unmodified	1177.5979	0.59790293	5228	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			54.792	54.393	2	0.0094929	49087	160511_QHF_FH_JSI10i_1	49.715	33.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1679	5228	1595	9879	13312	13312			1	
AFIVWLANGDTLR	0	Unmodified	1474.7932	0.79324869	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	2	2	2	1	84.179	79.058	2	2.7282E-25	45697	160513_QHF_FH_JSI10Kac_6	171.85	127.54			0.93651	1.1043	41.606	7	0	Median	1.0467	0.86674	37.479	2	0	Median	0.79138	0.9295	24.374	2	0	Median	1.3786	1.3147	67.198	2	0	Median	1.5135	1.6284	NaN	1	0	Median	1092700000	499990000	592670000	215190000	102140000	113050000	389570000	183030000	206530000	339290000	146880000	192410000	148620000	67937000	80679000	1680	5635	1596	9880;9881;9882;9883;9884;9885;9886	13313;13314;13315;13316;13317;13318	13318			6	
AFKDEYMVNLVR	1	Unmodified	1483.7493	0.74933497	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			10							1	3	3	3	60.272	59.792	2;3	2.2034E-06	50217	160511_QHF_FH_JSI10i_3	112.13	92.364			1.0823	1.05	9.3015	8	4	Median	1.4175	1.1695	NaN	1	0	Median	0.87344	1.0364	NaN	1	0	Median	1.1121	1.0368	10.871	3	2	Median	1.0532	1.0633	10.812	3	2	Median	622870000	274280000	348590000	45399000	18941000	26458000	94103000	41937000	52166000	245080000	108980000	136100000	238290000	104420000	133870000	1681	5128	1597	9887;9888;9889;9890;9891;9892;9893;9894;9895;9896	13319;13320;13321;13322;13323;13324;13325;13326;13327	13323			9	
AFKDTGK	2	Acetyl (K);Acetyl (Protein N-term)	849.42323	0.42323303	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	1	1	0	1			By MS/MS	By MS/MS	11.3	0.471				2	1							1	2	37.635	28.936	2	0.0021621	12326	160513_QHF_FH_JSI12Kacf_1	62.659	48.673			0.40844	0.42978	5.7777	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41323	0.4024	NaN	1	0	Median	0.41811	0.44051	3.4887	2	0	Median	43999000	29873000	14127000	0	0	0	0	0	0	17922000	13021000	4901000	26078000	16852000	9225700	1682	1918	1598	9897;9898;9899	13328;13329;13330	13328	1923;1924		2	
AFKELPVNAQNYVR	1	Acetyl (K)	1689.8839	0.88385462	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.316	66.68	2	0.0059549	35466	160513_QHF_FH_JSI11Kac_5	69.349	23.376			0.48608	0.4743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48608	0.4743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1638500	1293000	345540	0	0	0	0	0	0	1638500	1293000	345540	0	0	0	1683	1356	1599	9900	13331	13331	1291		1	
AFKHVFGK	2	Acetyl (K)	974.53379	0.53378653	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.898	35.258	3	0.0042415	19216	160513_QHF_FH_JSI11Kac_6	69.423	52.038			0.055812	0.05508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.055812	0.05508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13286000	12797000	489690	0	0	0	0	0	0	13286000	12797000	489690	0	0	0	1684	5479	1600	9901	13332	13332	3440		1	
AFKSLDK	2	Acetyl (K)	849.45962	0.45961853	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		38.201	28.613	2	0.023619	17540	160513_QHF_FH_JSI11Kac_4	80.438	29.472			0.028726	0.02816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.028726	0.02816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14456000	14277000	179190	0	0	0	0	0	0	14456000	14277000	179190	0	0	0	1685	813	1601	9902	13333	13333	459		1	
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	1	Unmodified	2751.4596	0.45956554	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.24	4.4	12	6	4					3		6	6	7	6	100.11	98.769	2;3;4	5.8651E-180	91761	160511_QHF_FH_JSI10i_1	306.27	294.79			0.96346	0.99336	16.759	25	2	Median	1.2618	1.055	24.73	6	0	Median	0.94919	1.0941	10.05	6	0	Median	0.91202	0.89487	17.131	7	2	Median	1.0108	1.0121	6.0944	6	0	Linear	33593000000	17296000000	16297000000	4561300000	1878900000	2682400000	10541000000	5413100000	5127900000	10531000000	5802000000	4729300000	7959000000	4201700000	3757300000	1686	837	1602	9903;9904;9905;9906;9907;9908;9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919;9920;9921;9922;9923;9924;9925;9926;9927	13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352;13353;13354;13355;13356;13357;13358;13359;13360;13361;13362;13363;13364	13347			30	
AFLASGPYLTHQQK	1	Acetyl (Protein N-term)	1601.8202	0.82019173	5741	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.83	4	4	3					4		5	5	2	3	73.767	72.167	2	9.7527E-11	64319	160511_QHF_FH_JSI10i_2	100.72	65.835			0.79494	0.77959	34.273	10	1	Median	1.0021	0.86195	11.579	2	0	Median	0.79734	0.95301	54.782	3	1	Plateau	0.90909	0.88628	25.672	2	0	Median	0.72541	0.76526	29.672	3	0	Median	916360000	496130000	420230000	147710000	76049000	71666000	228210000	141980000	86237000	331680000	161910000	169770000	208750000	116200000	92557000	1687	5741	1603	9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942	13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391;13392	13387			28	
AFLASGPYLTHQQK	1	Unmodified	1559.8096	0.80962704	5741	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			46.903	45.34	3	0.00094768	37877	160511_QHF_FH_JSI10i_3	55.186	46.472			0.86441	0.98742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86441	0.98742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23644000	17194000	6450400	0	0	0	23644000	17194000	6450400	0	0	0	0	0	0	1688	5741	1603	9943	13393	13393			1	
AFLDALQNQAEASSK	1	Unmodified	1591.7842	0.78420015	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.62	9	6	7				4	4		6	8	7	9	60.426	58.388	2;3	1.3623E-116	50072	160511_QHF_FH_JSI12i_2	322.31	263.63			1.0067	0.98083	35.253	23	4	Median	1.1012	0.9351	9.2086	5	0	Median	0.85026	1.024	38.147	6	2	Median	1.0186	1.0192	12.387	6	1	Median	1.0226	1.0649	51.103	6	1	Median	5444600000	2803900000	2640800000	689660000	360470000	329200000	1153400000	685560000	467820000	1845800000	980640000	865120000	1755900000	777220000	978630000	1689	2328	1604	9944;9945;9946;9947;9948;9949;9950;9951;9952;9953;9954;9955;9956;9957;9958;9959;9960;9961;9962;9963;9964;9965;9966;9967;9968;9969;9970;9971;9972;9973	13394;13395;13396;13397;13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424;13425;13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454	13405			61	
AFLDFHALPYQVVEVNPVR	0	Unmodified	2213.1633	0.16332394	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.03	100.94	3	1.2048E-42	87600	160511_QHF_FH_JSI12i_3	198.96	190.46			0.96199	0.96139	15.377	4	0	Linear	1.1745	0.95096	NaN	1	0	Median	1.117	1.3016	NaN	1	0	Median	1.0276	0.97192	NaN	1	0	Median	0.94073	0.95027	NaN	1	0	Median	2220500000	1138800000	1081700000	43559000	21000000	22559000	184540000	89336000	95201000	669620000	328690000	340930000	1322800000	699770000	623030000	1690	4773	1605	9974;9975;9976;9977	13455;13456;13457;13458;13459	13459			5	
AFLDFHALPYQVVEVNPVRR	0	Unmodified	2369.2644	0.26443497	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.84	79.172	4	4.3415E-05	44268	160513_QHF_FH_JSI10Kac_6	109.66	89.938			0.58205	0.69151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58205	0.69151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44024000	32063000	11961000	0	0	0	44024000	32063000	11961000	0	0	0	0	0	0	1691	4773	1606	9978	13460	13460			1	
AFLDFYHSFLEK	1	Unmodified	1515.7398	0.73981614	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	4	2	2	93.902	92.502	2;3	1.7305E-27	45145	160513_QHF_FH_JSI10Kac_6	168.02	155.14			0.93066	0.96325	10.645	8	1	Median	1.3414	1.1189	14.439	2	1	Median	0.83286	0.97669	3.402	2	0	Median	1.0115	0.95258	3.0186	2	0	Median	0.85813	0.88779	0.99153	2	0	Median	1011900000	501490000	510380000	230250000	76142000	154110000	97585000	56061000	41524000	319010000	176240000	142780000	365020000	193050000	171970000	1692	3900	1607	9979;9980;9981;9982;9983;9984;9985;9986;9987;9988;9989	13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480;13481;13482;13483	13483			23	
AFLDNGPK	1	Unmodified	860.43922	0.43921744	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	24.77	23.936	2	0.0019397	19903	160511_QHF_FH_JSI11i_2	94.662	68.554			0.78333	0.80064	20.087	3	3	Median	NaN	NaN	NaN	0	0	Median	0.78333	0.95415	NaN	1	1	Median	0.78784	0.80064	NaN	1	1	Median	0.57162	0.63914	NaN	1	1	Median	518600000	350110000	168490000	0	0	0	123070000	83360000	39706000	230750000	158920000	71833000	164780000	107830000	56956000	1693	2084	1608	9990;9991;9992	13484;13485;13486	13485			3	
AFLDSLPDVK	1	Unmodified	1103.5863	0.58627561	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.4	0.49	3	2								1	1	2	1	68.237	67.679	2	0.00018731	61313	160511_QHF_FH_JSI10i_1	82.287	46.992			0.91307	0.93704	53.696	5	1	Median	1.4018	1.212	NaN	1	1	Median	0.4977	0.5852	NaN	1	0	Median	1.007	0.9977	8.8704	2	0	Median	0.31785	0.32666	NaN	1	0	Median	225550000	127800000	97750000	41619000	17345000	24274000	46909000	29359000	17550000	118050000	66740000	51311000	18970000	14355000	4614800	1694	274	1609	9993;9994;9995;9996;9997	13487;13488;13489	13488			2	
AFLEDMKK	2	Unmodified	980.5001	0.50010314	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	29.628	29.575	3	0.0034642	24837	160511_QHF_FH_JSI12i_3	59.597	36.816			0.53255	0.53578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53255	0.53578	NaN	1	1	Median	102510000	49974000	52540000	0	0	0	0	0	0	0	0	0	102510000	49974000	52540000	1695	5107	1610	9998	13490	13490			1	
AFLEENNLDYIIR	0	Unmodified	1608.8148	0.814772	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								3	2	3	5	85.13	84.492	2;3	1.1577E-30	74210	160511_QHF_FH_JSI11i_2	189.57	150.27			0.96193	0.96807	18.061	11	4	Median	1.3146	1.1322	8.4865	2	0	Median	0.86698	1.037	24.581	2	1	Median	0.96193	0.96807	26.541	3	0	Median	0.8194	0.91281	12.288	4	3	Median	1010300000	509900000	500370000	257710000	95466000	162240000	60955000	32736000	28220000	422330000	237370000	184960000	269280000	144330000	124950000	1696	1793	1611	9999;10000;10001;10002;10003;10004;10005;10006;10007;10008;10009;10010;10011	13491;13492;13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504;13505;13506;13507;13508;13509;13510	13505			20	
AFLEILHTYQK	1	Unmodified	1361.7343	0.73433683	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.4		2	8						6	4	5	4	3	69.2	65.453	2;3	3.9582E-28	35693	160513_QHF_FH_JSI10Kac_6	184.24	153.85			1.0102	0.93746	31.117	16	5	Median	1.0269	0.84581	13.666	4	1	Median	0.59023	0.70911	34.469	5	3	Median	1.0051	0.93084	17.436	4	1	Linear	1.0065	1.0384	7.1079	3	0	Median	1499100000	806030000	693070000	292890000	136970000	155920000	507210000	343790000	163410000	280050000	132450000	147600000	418960000	192820000	226140000	1697	4247	1612	10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027	13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521;13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532;13533	13532			23	
AFLFDVVSK	1	Unmodified	1024.5593	0.55933258	4838	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	73.208	72.493	2;3	0.00042813	64184	160511_QHF_FH_JSI9i_3	90.657	53.636			1.0225	0.98879	28.097	4	2	Median	1.2498	1.0685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6384	1.5388	NaN	1	0	Median	0.81747	0.85752	9.1815	2	1	Median	96249000	52009000	44239000	7936800	3508200	4428600	0	0	0	16896000	8369200	8526800	71416000	40132000	31284000	1698	4838	1613	10028;10029;10030;10031	13534;13535;13536;13537	13536			3	
AFLFVNK	1	Unmodified	837.47487	0.47487467	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		2	4						2	2	2	2	2	59.39	56.297	2	0.00097038	46312	160511_QHF_FH_JSI9i_3	126.05	81.435			1.0741	1.0785	8.7121	8	0	Median	1.1797	0.99605	15.676	2	0	Median	0.89826	1.0781	3.1999	2	0	Median	1.2174	1.1539	6.9752	2	0	Median	0.99916	1.0493	1.2939	2	0	Median	1762100000	876910000	885230000	307640000	146370000	161270000	267820000	133230000	134590000	457620000	228190000	229440000	729060000	369120000	359940000	1699	3494	1614	10032;10033;10034;10035;10036;10037;10038;10039	13538;13539;13540;13541;13542;13543;13544;13545;13546;13547;13548;13549	13543			12	
AFLGELK	1	Unmodified	776.44324	0.44324019	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.3		4	4					3	2	4	2	4	3	48.299	44.346	2	0.0041464	38880	160511_QHF_FH_JSI11i_3	99.919	35.143			1.0037	1.0275	5.3654	12	0	Median	1.2229	1.1079	8.0552	4	0	Linear	0.8483	1.009	7.0176	2	0	Median	1.0416	1.0257	3.6716	3	0	Median	0.94688	1.0434	4.1376	3	0	Median	2937200000	1392700000	1544500000	485820000	226870000	258950000	640750000	317880000	322870000	1111800000	497390000	614400000	698820000	350580000	348250000	1700	2094	1615	10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052	13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571;13572;13573;13574	13550			25	
AFLGPFAHK	1	Unmodified	986.53379	0.53378653	2372	Q13214	SEMA3B	Semaphorin-3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.947	44.096	3	2.1798E-05	37292	160511_QHF_FH_JSI12i_3	93.374	89.017			0.95818	0.92146	14.377	4	0	Median	1.1101	0.92294	NaN	1	0	Median	0.79506	0.91998	NaN	1	0	Median	1.2501	1.1815	NaN	1	0	Median	0.82705	0.84744	NaN	1	0	Median	257290000	120810000	136480000	72079000	30671000	41408000	61524000	34579000	26945000	57374000	19841000	37532000	66310000	35716000	30595000	1701	2372	1616	10053;10054;10055;10056	13575;13576;13577;13578;13579;13580;13581;13582;13583;13584	13583			10	
AFLGQVLVR	0	Unmodified	1001.6022	0.60220045	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.487	62.207	2	0.00025002	53672	160511_QHF_FH_JSI12i_3	84.244	64.607			0.74981	0.71766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74981	0.71766	NaN	1	0	Median	32479000	18660000	13819000	0	0	0	0	0	0	0	0	0	32479000	18660000	13819000	1702	1320	1617	10057	13585	13585			1	
AFLIEEQK	1	Unmodified	976.52295	0.52294707	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	42.506	41.66	2	0.0006356	35761	160511_QHF_FH_JSI11i_2	113.5	78.006			0.67745	0.74835	19.909	6	2	Median	0.96048	0.80149	NaN	1	0	Median	0.49739	0.59965	30.719	2	1	Median	0.83311	0.84136	NaN	1	0	Median	0.67745	0.7336	3.4244	2	1	Median	858180000	501350000	356830000	36334000	22347000	13987000	283620000	178340000	105280000	305160000	166620000	138530000	233070000	134040000	99031000	1703	1646	1618	10058;10059;10060;10061;10062;10063;10064	13586;13587;13588;13589;13590	13589			5	
AFLISLLNLFDDTAK	1	Unmodified	1679.9134	0.91342341	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		100.05	92.481	2	2.8242E-86	52162	160513_QHF_FH_JSI11Kac_6	273.04	158.55			1.0445	1.1141	62.886	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60624	0.7142	NaN	1	0	Median	1.7996	1.738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117090000	60963000	56126000	0	0	0	70984000	43853000	27131000	46105000	17110000	28994000	0	0	0	1704	3063	1619	10065;10066	13591;13592;13593	13591			3	
AFLIWAYFDK	1	Unmodified	1272.6543	0.6542956	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	94.798	85.54	2	9.6919E-14	46438	160513_QHF_FH_JSI12Kac_6	149.94	108.91			1.2277	1.2916	26.215	3	3	Plateau	0.88097	0.76906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1116	1.0662	NaN	1	1	Median	1.2277	1.2916	NaN	1	1	Median	829860000	438570000	391290000	302950000	182130000	120820000	0	0	0	289550000	162240000	127320000	237360000	94206000	143150000	1705	3797	1620	10067;10068;10069	13594;13595;13596	13596			3	
AFLLDPDR	0	Unmodified	945.49198	0.4919813	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	53.455	53.336	2	0.0025791	45686	160511_QHF_FH_JSI12i_3	77.282	46.564			1.3051	1.2801	7.0309	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4517	1.3453	NaN	1	1	Median	1.1732	1.218	NaN	1	1	Median	256130000	105870000	150260000	0	0	0	0	0	0	140550000	51660000	88894000	115580000	54210000	61367000	1706	4428	1621	10070;10071;10072;10073	13597;13598;13599;13600	13600			4	
AFLLESLLK	1	Unmodified	1032.6219	0.62193284	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	99.633	99.534	2	1.754E-06	86010	160511_QHF_FH_JSI12i_3	130.27	96.475			0.96413	0.98411	7.8044	7	0	Median	0.99221	0.85505	NaN	1	0	Median	0.83976	1.0187	4.8786	2	0	Median	1.0157	0.97536	4.1701	2	0	Median	0.90992	0.96293	10.818	2	0	Median	274920000	145790000	129130000	11188000	6305300	4882900	60355000	32022000	28333000	85907000	46833000	39074000	117470000	60631000	56843000	1707	4143	1622	10074;10075;10076;10077;10078;10079;10080	13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617;13618	13617			18	
AFLLFPTIER	0	Unmodified	1205.6808	0.6808447	4755	Q9H6V9	C2orf43	UPF0554 protein C2orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	95.566	95.125	2	6.9805E-07	82342	160511_QHF_FH_JSI12i_3	112.94	93.154			0.89588	0.91472	11.708	4	0	Median	1.2302	0.98616	NaN	1	0	Median	0.82579	0.92517	NaN	1	0	Median	0.97193	0.90438	NaN	1	0	Median	0.76998	0.75091	NaN	1	0	Median	137260000	74156000	63106000	29760000	15664000	14096000	22398000	11963000	10436000	41249000	20159000	21091000	43855000	26371000	17484000	1708	4755	1623	10081;10082;10083;10084	13619;13620;13621;13622;13623	13623			5	
AFLLMASQYQQPHENDVAALLK	1	Unmodified	2486.2628	0.26277999	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		94.693	94.134	3	9.8922E-08	83696	160511_QHF_FH_JSI11i_3	102.98	95.266			1.1273	0.99992	16.235	5	5	Median	1.2082	0.99992	NaN	1	1	Median	0.95626	1.0884	26.828	2	2	Median	1.1047	1.0319	16.705	2	2	Median	NaN	NaN	NaN	0	0	Median	144730000	77345000	67387000	17424000	7681400	9742400	38472000	23026000	15446000	88836000	46638000	42198000	0	0	0	1709	1491	1624	10085;10086;10087;10088;10089	13624;13625;13626;13627;13628	13624			5	
AFLLMASQYQQPHENDVAALLKPISEK	2	Unmodified	3040.5692	0.56919234	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	1	2	2		92.205	87.433	4	4.616E-99	43556	160513_QHF_FH_JSI9Kac_6	221.04	203.67			0.99	0.94629	20.181	5	0	Median	1.0807	0.93042	NaN	1	0	Median	0.90648	1.0609	16.168	2	0	Median	1.0236	0.95191	34.68	2	0	Median	NaN	NaN	NaN	0	0	Median	385590000	190610000	194970000	110230000	54033000	56199000	157490000	87520000	69972000	117860000	49059000	68803000	0	0	0	1710	1491	1625	10090;10091;10092;10093;10094	13629;13630;13631;13632;13633;13634;13635;13636;13637	13635			9	
AFLLMFIK	1	Oxidation (M)	997.56706	0.56706049	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.571	78.31	2	3.2676E-05	41697	160513_QHF_FH_JSI12Kac_6	129.96	52.212			1.0774	1.0317	7.1477	4	0	Median	1.2425	1.0419	NaN	1	0	Median	0.85275	0.99722	NaN	1	0	Median	1.055	1.0216	NaN	1	0	Median	1.1002	1.1715	NaN	1	0	Median	418930000	200340000	218600000	180400000	82709000	97690000	105200000	54653000	50547000	67837000	32460000	35377000	65497000	30514000	34983000	1711	1718	1626	10095;10096;10097;10098	13638;13639;13640;13641;13642;13643;13644;13645	13643		1394	8	
AFLLMFIK	1	Unmodified	981.57215	0.57214587	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.845	83.516	2	5.1256E-05	46356	160513_QHF_FH_JSI9Kac_6	129.16	54.825			0.9475	1.0006	29.132	4	0	Median	0.95145	0.79926	NaN	1	0	Median	0.94357	1.1388	NaN	1	0	Median	0.91368	0.87919	NaN	1	0	Median	1.4311	1.5306	NaN	1	0	Median	936320000	452000000	484320000	208780000	97279000	111500000	284370000	150040000	134320000	279510000	124690000	154820000	163660000	79984000	83677000	1712	1718	1626	10099;10100;10101;10102	13646;13647;13648;13649;13650;13651	13647			6	
AFLLSLAALR	0	Unmodified	1073.6597	0.65971533	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.218	81.5	2	0.0075794	45921	160513_QHF_FH_JSI10Kac_6	58.981	41.595			0.60477	0.71956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60477	0.71956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63179000	42745000	20434000	0	0	0	63179000	42745000	20434000	0	0	0	0	0	0	1713	3401	1627	10103	13652	13652			1	
AFLLYSFLR	0	Unmodified	1128.6332	0.63316622	2931	Q5T011	SZT2	Protein SZT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	91.41	83.084	2	0.00013663	46101	160513_QHF_FH_JSI9Kac_6	107.19	87.049			0.78097	0.832	20.613	4	2	Median	1.1261	0.96473	NaN	1	0	Median	0.80303	0.94414	NaN	1	0	Median	0.7595	0.73319	NaN	1	1	Median	0.60261	0.62939	NaN	1	1	Median	235120000	126610000	108520000	54773000	23074000	31699000	79434000	45986000	33448000	66996000	37214000	29782000	33919000	20333000	13586000	1714	2931	1628	10104;10105;10106;10107;10108	13653;13654;13655;13656;13657;13658;13659	13654			7	
AFLNAIMR	0	Unmodified	934.50586	0.50585722	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	2	2	1		62.265	58.294	2	0.0062065	51378	160511_QHF_FH_JSI11i_3	63.287	36.491			1.1945	1.0538	8.133	5	0	Median	1.2819	1.0516	11.982	2	0	Median	0.90053	1.0478	0.80226	2	0	Median	1.2623	1.1866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	213860000	103140000	110720000	69504000	33107000	36396000	85296000	44141000	41155000	59064000	25893000	33171000	0	0	0	1715	2578	1629	10109;10110;10111;10112;10113	13660;13661;13662;13663;13664	13660			5	
AFLPAMTK	1	Unmodified	877.47316	0.47316011	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	49.792	48.874	2	0.0017591	41922	160511_QHF_FH_JSI12i_3	85.212	72.781			1.1639	1.069	7.3478	2	1	Median	1.2144	1.0149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1154	1.126	NaN	1	0	Median	164970000	74687000	90279000	33570000	14637000	18933000	0	0	0	0	0	0	131400000	60050000	71345000	1716	3602	1630	10114;10115;10116	13665;13666;13667	13667			3	
AFLPLLK	1	Unmodified	800.51601	0.5160112	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	74.496	73.735	2	0.012433	64043	160511_QHF_FH_JSI12i_3	69.39	59.64			0.92131	0.92495	24.009	6	0	Median	1.1177	0.92386	NaN	1	0	Median	0.68441	0.81121	37.053	2	0	Median	0.90555	0.86664	36.566	2	0	Median	0.91846	0.92603	NaN	1	0	Median	261130000	125780000	135350000	46615000	22089000	24525000	50541000	25610000	24931000	80227000	36658000	43569000	83751000	41424000	42327000	1717	2564	1631	10117;10118;10119;10120;10121;10122	13668;13669;13670;13671;13672;13673;13674;13675;13676;13677;13678;13679;13680	13679			13	
AFLQGGQEATDIALLLR	0	Unmodified	1814.989	0.98904797	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	101.04	100.91	2	0.00071252	88598	160511_QHF_FH_JSI11i_2	76.311	46.778			0.94284	1.0738	20.724	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77334	0.95901	NaN	1	0	Median	1.3931	1.4333	NaN	1	0	Median	0.94284	1.0738	NaN	1	0	Median	215980000	105710000	110270000	0	0	0	69393000	33175000	36217000	93676000	43535000	50141000	52907000	28997000	23911000	1718	2516	1632	10123;10124;10125	13681	13681			0	
AFLSDMIK	1	Unmodified	923.47864	0.47863942	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.757	61.45	2	0.01776	52781	160511_QHF_FH_JSI12i_2	46.426	15.136			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1719	1718	1633	10126	13682	13682			1	
AFLSPPTLLEGPLR	0	Unmodified	1509.8555	0.8555146	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			97.585	97.203	2	0.00033223	78833	160511_QHF_FH_JSI9i_3	84.17	71.594			1.2429	1.2486	11.53	2	0	Median	1.5843	1.3546	NaN	1	0	Median	0.97511	1.1508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16446000	7938600	8507100	7640100	3247100	4393000	8805600	4691500	4114100	0	0	0	0	0	0	1720	4195	1634	10127;10128	13683;13684;13685;13686	13685			4	
AFLSTHPNTETVFEAFLK	1	Unmodified	2051.0364	0.036392091	4233	Q96S44	TP53RK	TP53-regulating kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	98.215	98.093	3	2.3183E-23	81431	160511_QHF_FH_JSI10i_3	175.51	165.72			0.89977	0.90043	11.003	4	0	Median	0.95291	0.77082	NaN	1	0	Median	0.83825	0.99927	NaN	1	0	Median	0.97317	0.92915	NaN	1	0	Median	0.8496	0.8726	NaN	1	0	Median	337140000	178190000	158940000	63912000	33245000	30666000	55032000	26748000	28285000	81517000	36929000	44588000	136670000	81271000	55404000	1721	4233	1635	10129;10130;10131;10132	13687;13688;13689;13690;13691;13692;13693;13694;13695;13696	13690			10	
AFLTLAEDILR	0	Unmodified	1260.7078	0.70778773	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.16	101.09	2	1.4078E-09	90145	160511_QHF_FH_JSI11i_3	134.59	93.605			1.1201	1.0804	23.743	6	1	Median	1.7972	1.5822	NaN	1	1	Median	0.77213	0.95743	NaN	1	0	Median	1.1201	1.0802	6.8983	2	0	Median	1.2495	1.3058	33.656	2	0	Median	761100000	330470000	430640000	128310000	43229000	85078000	69481000	40916000	28564000	203510000	95929000	107580000	359800000	150390000	209410000	1722	1933	1636	10133;10134;10135;10136;10137;10138	13697;13698;13699;13700	13697			3	
AFLTLAEDILRK	1	Unmodified	1388.8028	0.80275075	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	4.87		5	11						3	6	6	4	3	92.626	91.825	2;3	4.158E-32	76029	160511_QHF_FH_JSI9i_3	191.53	166.21			0.87647	0.94446	63.238	17	13	Median	0.85458	0.69991	69.185	6	5	Median	1.5471	1.7807	50.421	5	3	Median	0.85767	0.82274	34.703	4	3	Median	0.85128	0.87603	119.83	2	2	Median	1862500000	953930000	908530000	486910000	206630000	280280000	418380000	187430000	230950000	732270000	433180000	299090000	224900000	126690000	98215000	1723	1933	1637	10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157	13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736;13737	13717			37	
AFMGPLK	1	Unmodified	762.40983	0.40983157	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	4	4	42.969	39.923	2	0.0080097	35176	160511_QHF_FH_JSI10i_2	85.306	85.306			1.0115	1.0691	10.497	15	2	Median	1.3244	1.1237	4.4899	3	0	Median	0.92141	1.0833	6.5627	4	1	Median	1.0318	1.0423	6.9275	4	0	Median	1.0101	1.0571	17.509	4	1	Median	17233000000	7848600000	9384500000	3334200000	1424100000	1910100000	3498700000	1702200000	1796500000	4457900000	2217000000	2240900000	5942400000	2505300000	3437000000	1724	1484	1638	10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169;10170;10171;10172	13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767	13758			30	
AFMGPLK	1	Oxidation (M)	778.40475	0.40474619	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.71			2					2	3	2	1	3	1	35.475	28.56	2	0.013788	22147	160511_QHF_FH_JSI10i_3	80.377	63.45			0.92089	0.96835	19.965	7	1	Median	1.2313	1.0404	0.54926	2	0	Median	0.88758	0.99799	NaN	1	0	Median	0.62687	0.58997	26.83	3	1	Plateau	0.82549	0.91541	NaN	1	0	Median	656390000	366880000	289510000	11817000	4852500	6964600	416620000	221300000	195320000	218040000	135340000	82701000	9913800	5383600	4530200	1725	1484	1638	10173;10174;10175;10176;10177;10178;10179	13768;13769;13770;13771;13772	13769		1161	5	
AFMGPLKK	2	Oxidation (M)	906.49971	0.49970921	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							4	2	1	1	25.947	24.957	2;3	0.0045586	23389	160511_QHF_FH_JSI11i_3	51.854	42.64			2.2572	2.372	95.158	8	3	Median	2.5779	2.0689	119.49	4	2	Median	1.8501	2.1368	9.9235	2	1	Median	2.58	2.4546	NaN	1	0	Median	8.2519	8.4265	NaN	1	0	Median	1297800000	431810000	866040000	805500000	307560000	497940000	165060000	56867000	108190000	128500000	45651000	82846000	198790000	21730000	177060000	1726	1484	1639	10180;10181;10182;10183;10184;10185;10186;10187	13773;13774;13775;13776;13777;13778;13779;13780	13773		1161	8	
AFMGPLKK	2	Unmodified	890.50479	0.50479459	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			15							4	4	3	4	28.174	27.442	2;3	0.00029218	22530	160511_QHF_FH_JSI9i_3	113.25	82.749			0.70353	0.55235	164.78	15	8	Median	2.783	2.2008	194.87	4	1	Median	0.5266	0.60259	144.91	4	2	Median	0.97859	0.91943	112.56	3	3	Plateau	1.7189	1.7548	154.65	4	2	Linear	10264000000	4227600000	6036300000	2657500000	885650000	1771900000	2096300000	1161800000	934490000	2251800000	728360000	1523400000	3258300000	1451800000	1806500000	1727	1484	1639	10188;10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200;10201;10202	13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800;13801	13793			21	
AFMGTPVQK	1	Unmodified	977.50044	0.50043749	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	31.721	30.957	2	0.002069	26376	160511_QHF_FH_JSI11i_2	77.923	64.934			1.201	1.0922	24.53	6	1	Median	1.2289	1.0144	NaN	1	0	Median	0.71462	0.83484	NaN	1	0	Median	1.2677	1.2387	7.3541	2	0	Median	0.85477	0.91086	39.308	2	1	Median	1608000000	838150000	769820000	324830000	150850000	173980000	301410000	159660000	141750000	665920000	327210000	338710000	315810000	200430000	115380000	1728	1576	1640	10203;10204;10205;10206;10207;10208	13802;13803;13804	13803			3	
AFMNNKFGIK	2	Acetyl (K)	1210.6169	0.61686423	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.231	61.767	2	0.011796	33473	160513_QHF_FH_JSI11Kac_6	65.246	37.992			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5456000	5456000	0	0	0	0	0	0	0	5456000	5456000	0	0	0	0	1729	432	1641	10209	13805	13805	217		1	
AFMTADLPNELIELLEK	1	Unmodified	1946.0071	0.0070657979	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							2	4	3	3	103.04	102.98	2;3	3.0051E-183	89796	160511_QHF_FH_JSI12i_3	375.04	351.36			1.1142	1.1167	8.6976	12	5	Median	1.2399	1.0532	3.8586	2	2	Median	0.93422	1.1439	8.8568	4	2	Median	1.0948	1.1455	4.37	3	0	Plateau	1.0931	1.0959	13.123	3	1	Median	3400200000	1637400000	1762800000	297520000	124090000	173420000	628340000	322360000	305980000	1159000000	565980000	593020000	1315300000	624930000	690390000	1730	1807;2155	1642	10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221	13806;13807;13808;13809;13810;13811;13812;13813;13814;13815;13816;13817;13818;13819;13820;13821	13819			16	
AFMTADLPNELIELLEK	1	Oxidation (M)	1962.002	0.00198042	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	3	4	4	102.6	102.54	2;3	8.0074E-137	89381	160511_QHF_FH_JSI12i_3	285.54	271.28			1.0368	1.1844	20.02	13	6	Median	1.5295	1.3095	40.653	2	1	Median	1.0307	1.2619	3.6107	3	1	Plateau	1.1159	1.0513	14.568	4	3	Median	0.98873	1.0409	22.813	4	1	Median	971910000	452080000	519830000	115380000	50937000	64441000	143290000	65643000	77642000	216790000	103360000	113430000	496460000	232140000	264320000	1731	1807;2155	1642	10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234	13822;13823;13824;13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837	13835		1496	16	
AFMVTDEDIR	0	Unmodified	1195.5543	0.55432356	744	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.023	51.496	2	0.001088	43879	160511_QHF_FH_JSI12i_2	72.928	44.529			0.70817	0.72135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70817	0.72135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62698000	37009000	25690000	0	0	0	0	0	0	62698000	37009000	25690000	0	0	0	1732	744	1643	10235;10236	13838;13839	13838			2	
AFNDPFIQK	1	Unmodified	1078.5447	0.54474515	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.49	2	4	1					2		2	2	4	1	57.657	54.571	2	0.00019197	48173	160511_QHF_FH_JSI10i_2	85.666	57.457			0.96493	0.94827	27.501	9	5	Median	1.4154	1.1775	39.466	2	1	Median	0.70013	0.84803	42.508	2	1	Median	0.88007	0.8664	15.68	4	3	Median	1.079	1.1926	NaN	1	0	Median	1723900000	845150000	878720000	239070000	128810000	110260000	315980000	170470000	145510000	784410000	360640000	423770000	384400000	185230000	199170000	1733	3852	1644	10237;10238;10239;10240;10241;10242;10243;10244;10245	13840;13841;13842;13843;13844;13845;13846	13846			7	
AFNFGNGLQMLGQK	1	Unmodified	1523.7555	0.75548298	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	84.387	83.724	2;3	3.3098E-67	74627	160511_QHF_FH_JSI11i_3	239.39	180.71			0.902	0.88939	26.201	8	1	Median	1.0983	0.90203	3.3609	2	0	Median	0.78129	0.86688	4.992	2	0	Median	0.99814	0.92552	3.2018	2	0	Median	0.52343	0.53394	25.774	2	1	Median	820090000	417120000	402970000	233020000	105230000	127790000	163100000	91925000	71179000	276270000	134170000	142090000	147700000	85786000	61912000	1734	707	1645	10246;10247;10248;10249;10250;10251;10252;10253	13847;13848;13849;13850;13851;13852;13853;13854;13855;13856;13857;13858;13859;13860	13848			14	
AFNFGNGLQMLGQK	1	Oxidation (M)	1539.7504	0.7503976	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			3							2	1			72.113	70.647	2	0.00088641	57917	160511_QHF_FH_JSI9i_3	70.908	54.77			0.77404	0.79005	39.737	2	2	Median	1.2221	1.0464	NaN	1	1	Median	0.49026	0.59652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15829000	8901500	6927400	8900900	4267200	4633800	6928000	4634400	2293600	0	0	0	0	0	0	1735	707	1645	10254;10255;10256	13861;13862;13863	13863		246	3	
AFNFGNGLQMLGQKPK	2	Unmodified	1748.9032	0.90320985	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		75.483	74.531	3	0.034711	62596	160511_QHF_FH_JSI10i_3	52.484	46.58			0.80876	0.74801	1.8697	3	0	Median	0.96069	0.77025	NaN	1	0	Median	0.63464	0.74393	NaN	1	0	Median	0.80876	0.74801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	224770000	121860000	102910000	58246000	27674000	30573000	53841000	35933000	17908000	112680000	58254000	54429000	0	0	0	1736	707	1646	10257;10258;10259	13864	13864			0	
AFNFLNEIK	1	Unmodified	1094.576	0.57604528	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.73		1	4				2	6	3	3	6	2	5	67.088	59.383	2	5.2699E-08	67051	160511_QHF_FH_JSI12i_3	151.44	130.74			1.077	1.0158	28.552	15	5	Median	1.1398	0.9717	6.281	2	0	Median	0.93094	1.0929	35.643	6	2	Median	1.0259	0.97599	19.3	2	1	Median	1.0762	1.1722	31.907	5	2	Median	1051400000	502300000	549140000	92724000	40733000	51991000	311080000	145400000	165680000	245280000	112320000	132970000	402350000	203840000	198510000	1737	1754	1647	10260;10261;10262;10263;10264;10265;10266;10267;10268;10269;10270;10271;10272;10273;10274;10275	13865;13866;13867;13868;13869;13870;13871;13872;13873;13874;13875;13876;13877;13878;13879;13880;13881;13882;13883	13881			19	
AFNFLNEIKK	2	Unmodified	1222.671	0.67100829	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	66.281	65.462	3	4.9937E-10	54891	160511_QHF_FH_JSI10i_3	130.94	124.28			0.95882	0.87637	16.347	4	0	Median	0.97872	0.77853	NaN	1	0	Median	0.93932	1.0868	NaN	1	0	Median	1.0388	0.9737	NaN	1	0	Median	0.78814	0.78876	NaN	1	0	Median	396020000	191650000	204370000	94653000	48640000	46013000	116620000	52858000	63761000	95503000	40170000	55333000	89248000	49981000	39267000	1738	1754	1648	10276;10277;10278;10279	13884;13885;13886;13887;13888;13889;13890;13891;13892;13893	13887			10	
AFNLVKDSATGLSK	2	Acetyl (K)	1491.7933	0.79330827	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	74.588	63.917	2	3.4007E-17	34072	160513_QHF_FH_JSI11Kac_5	146.07	109.38			0.20038	0.19729	130.01	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.6898	2.0024	NaN	1	0	Median	0.21532	0.21132	9.7143	2	0	Median	NaN	NaN	NaN	0	0	Median	26827000	20573000	6254000	0	0	0	3614500	1713900	1900700	21919000	17566000	4353300	1292800	1292800	0	1739	1274	1649	10280;10281;10282;10283	13894;13895;13896;13897;13898;13899	13898	1182		6	
AFNLYNQMK	1	Unmodified	1127.5434	0.54336494	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.916	49.678	2	0.047584	42481	160511_QHF_FH_JSI12i_3	56.177	46.396			0.99061	0.99499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99061	0.99499	NaN	1	0	Median	75627000	39828000	35799000	0	0	0	0	0	0	0	0	0	75627000	39828000	35799000	1740	477	1650	10284	13900	13900			0	
AFNQGKIFK	2	Acetyl (K)	1093.592	0.59202969	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	1.08						3	4	4	4	3	4	4	4	54.746	44.666	2	1.2767E-32	25983	160513_QHF_FH_JSI11Kac_6	196.25	151.8			0.95342	1.0126	13.877	15	0	Median	0.94651	0.83555	17.582	3	0	Plateau	0.78516	0.84785	14.33	4	0	Median	1.1235	1.1329	12.848	4	0	Median	0.97921	1.003	4.9273	4	0	Median	18199000000	8558300000	9640400000	4070700000	1682800000	2387900000	4677200000	2552500000	2124700000	4403900000	2057500000	2346400000	5046900000	2265500000	2781400000	1741	1284	1651	10285;10286;10287;10288;10289;10290;10291;10292;10293;10294;10295;10296;10297;10298;10299	13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911;13912;13913;13914;13915;13916;13917;13918;13919;13920;13921;13922;13923;13924;13925;13926;13927;13928;13929;13930;13931;13932;13933;13934;13935;13936;13937;13938;13939	13908	1206		39	
AFNSSSFNSNTFLTR	0	Unmodified	1691.7903	0.79034816	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.6	6.17		3	4						3	4	5	1		67.8	65.098	2;3	2.0037E-32	34325	160513_QHF_FH_JSI9Kac_6	196.38	176.62			0.90467	0.8924	22.715	9	1	Median	1.2923	1.0838	30.139	4	0	Median	0.77956	0.89973	12.097	4	1	Median	0.76772	0.76036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	554900000	287530000	267370000	251450000	118930000	132520000	258920000	144590000	114330000	44525000	24012000	20514000	0	0	0	1742	1578	1652	10300;10301;10302;10303;10304;10305;10306;10307;10308;10309	13940;13941;13942;13943;13944;13945;13946;13947;13948;13949;13950	13949			10	
AFNSVDPTFDNSVPSK	1	Unmodified	1723.8053	0.80532952	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.499	56.847	2	5.57E-30	51449	160511_QHF_FH_JSI11i_1	188.48	168.28			0.81119	0.82365	8.5651	4	0	Median	1.059	0.87853	NaN	1	0	Median	0.66278	0.7722	NaN	1	0	Median	0.89322	0.88262	NaN	1	0	Median	0.7367	0.7488	NaN	1	0	Median	398610000	208140000	190470000	94757000	38970000	55787000	105570000	57425000	48142000	111130000	60463000	50664000	87164000	51286000	35877000	1743	4282	1653	10310;10311;10312;10313	13951;13952;13953;13954;13955;13956	13951			6	
AFNTDHQTQLLYQASAMMVESR	0	Unmodified	2540.1788	0.17879236	2247	Q06609	RAD51	DNA repair protein RAD51 homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.811	85.659	3	0.00085248	74381	160511_QHF_FH_JSI12i_3	45.395	37.822			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1744	2247	1654	10314	13957	13957			1	
AFNTFIDDVFAFIITMPTSHR	0	Unmodified	2442.2042	0.20420248	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.54	94.082	3	7.6817E-74	53461	160513_QHF_FH_JSI9Kac_6	212.65	199.06			1.0853	1.0894	11.009	2	0	Median	1.3784	1.1776	NaN	1	0	Median	0.85447	1.0078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1354200000	657860000	696370000	513550000	212350000	301200000	840680000	445510000	395170000	0	0	0	0	0	0	1745	4153	1655	10315;10316	13958;13959	13958			2	
AFNTISAWALQSGALDASR	0	Unmodified	1977.9908	0.99083888	3020	Q687X5	STEAP4	Metalloreductase STEAP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							3	2			91.118	90.022	2;3	8.4412E-16	75179	160511_QHF_FH_JSI10i_3	170.56	149.6			0.95698	0.99309	13.666	5	2	Median	0.95698	0.79386	17.024	3	1	Plateau	0.85461	0.99912	0.85673	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63251000	31827000	31423000	35180000	16551000	18628000	28071000	15276000	12795000	0	0	0	0	0	0	1746	3020	1656	10317;10318;10319;10320;10321	13960;13961;13962;13963;13964;13965;13966	13962			7	
AFPANGALFLAYEYSR	0	Unmodified	1788.8835	0.88352026	5699	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13.4	5.2			1						4	1	1	2	1	88.535	79.396	2;3	8.8525E-11	46068	160513_QHF_FH_JSI10Kac_6	156.81	130.69			1.9144	1.5036	30.681	3	1	Plateau	1.5867	1.3644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5798	1.5036	NaN	1	1	Median	2.3097	2.4206	NaN	1	0	Median	117810000	47011000	70800000	39345000	17297000	22049000	0	0	0	27813000	11733000	16080000	50653000	17981000	32672000	1747	5699	1657	10322;10323;10324;10325;10326	13967;13968;13969;13970	13970			4	
AFPCWDEPAIK	1	Unmodified	1332.6173	0.61725816	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.994	67.695	2	0.00027385	58169	160511_QHF_FH_JSI12i_2	77.677	72.986			1.5253	1.7191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5253	1.7191	NaN	1	0	Median	29999000	15855000	14144000	0	0	0	0	0	0	0	0	0	29999000	15855000	14144000	1748	1862	1658	10327	13971	13971			1	
AFPDSPGLNR	0	Unmodified	1072.5302	0.53015772	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.42	1	4	3				2	1		2	3	3	3	40.35	37.021	2	4.1961E-08	31865	160511_QHF_FH_JSI11i_2	125.31	108.77			0.96691	0.95164	16.078	11	4	Median	1.1086	0.91473	5.5956	2	0	Median	0.85487	1.0314	13.593	3	2	Plateau	0.96691	0.95177	6.9917	3	1	Median	1.0321	1.0613	27.839	3	1	Median	1458900000	657710000	801140000	204640000	85974000	118670000	415890000	217120000	198770000	373140000	176140000	196990000	465180000	178470000	286710000	1749	1433	1659	10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338	13972;13973;13974;13975;13976;13977;13978;13979;13980;13981;13982;13983;13984;13985;13986	13981			15	
AFPEHFTYEPNEADAAQGYR	0	Unmodified	2312.0134	0.013424818	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	57.981	57.601	3	1.241E-16	51100	160511_QHF_FH_JSI11i_3	150.7	142.08			1.0185	1.1739	5.3918	3	2	Median	NaN	NaN	NaN	0	0	Median	0.9959	1.236	NaN	1	0	Median	1.1737	1.1096	NaN	1	1	Median	1.0185	1.1739	NaN	1	1	Median	240550000	105910000	134640000	0	0	0	61042000	27395000	33647000	106420000	43651000	62765000	73093000	34860000	38233000	1750	1042	1660	10339;10340;10341	13987;13988;13989;13990;13991	13987			5	
AFPLAEWQPSDVDQR	0	Unmodified	1757.8373	0.83729835	4232	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.759	78.128	2	0.00032315	68642	160511_QHF_FH_JSI11i_2	97.911	81.379			1.1982	1.223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1982	1.223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20470000	7377200	13092000	0	0	0	0	0	0	20470000	7377200	13092000	0	0	0	1751	4232	1661	10342	13992	13992			1	
AFPMPGFDEH	0	Oxidation (M)	1162.4753	0.47534495	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	49.717	48.951	2	0.0024459	44545	160511_QHF_FH_JSI12i_1	64.757	63.06			0.9838	0.97807	10.554	3	1	Plateau	1.3773	1.1759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9838	0.95835	NaN	1	0	Median	0.94834	1.0149	NaN	1	0	Median	115270000	55987000	59284000	31755000	14550000	17206000	0	0	0	43288000	22254000	21034000	40228000	19184000	21045000	1752	1415	1662	10343;10344;10345	13993;13994;13995	13994		1067	3	
AFPMPGFDEH	0	Unmodified	1146.4804	0.48043033	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		4	5	3	5	70.356	66.088	2	3.3747E-14	60855	160511_QHF_FH_JSI12i_1	162.51	162.51			0.96113	1.0325	6.2178	17	0	Median	1.337	1.109	2.2395	4	0	Median	0.86271	1.0566	6.3247	5	0	Median	1.0291	0.99475	1.6816	3	0	Median	0.96113	1.0213	4.9944	5	0	Median	3897800000	1958800000	1939100000	789870000	334020000	455850000	999590000	539250000	460340000	1044900000	523890000	521060000	1063400000	561590000	501810000	1753	1415	1662	10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362	13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006;14007;14008;14009;14010;14011;14012;14013;14014;14015;14016;14017;14018;14019;14020;14021;14022;14023;14024;14025;14026;14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037	14007			42	
AFPMTMDEK	1	Unmodified	1068.462	0.46200307	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.536	45.113	2	0.03509	40591	160511_QHF_FH_JSI10i_1	47.198	34.221			0.53174	0.59892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53174	0.59892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32554000	19915000	12639000	0	0	0	32554000	19915000	12639000	0	0	0	0	0	0	1754	2455	1663	10363	14038	14038			1	
AFPNPYADYNK	1	Unmodified	1298.5932	0.5931519	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.02	4	5	1				3	2		4	3	5	3	52.529	48.813	2	3.3408E-13	43212	160511_QHF_FH_JSI10i_2	149.72	146.46			1.2717	1.2823	40.469	14	0	Median	1.3103	1.1027	10.975	3	0	Plateau	1.0132	1.1657	19.81	3	0	Median	1.4141	1.3879	63.084	5	0	Median	1.244	1.3334	6.7073	3	0	Median	1856300000	775400000	1080900000	398910000	165710000	233200000	423280000	203430000	219850000	635010000	239790000	395220000	399060000	166470000	232590000	1755	380	1664	10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378	14039;14040;14041;14042;14043;14044;14045;14046;14047;14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061	14061			23	
AFPQAANGSAK	1	Unmodified	1060.5302	0.53015772	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	17.101	16.267	2	0.0076344	13742	160511_QHF_FH_JSI10i_2	60.518	34.782			0.94615	0.91692	8.3739	3	3	Plateau	1.1091	0.91692	NaN	1	1	Median	0.7712	0.9364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94615	1.07	NaN	1	1	Median	57500000	33592000	23909000	26237000	14204000	12033000	20410000	12072000	8338200	0	0	0	10853000	7315800	3537500	1756	685	1665	10379;10380;10381	14062;14063;14064	14064			3	
AFPSDHYAIESQLQLHGLNIEESMR	0	Unmodified	2884.3814	0.38139157	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	3	3	86.196	85.937	3;4	1.3344E-35	74332	160511_QHF_FH_JSI12i_3	182.03	175.31			1.1699	1.1216	21.662	8	5	Median	1.169	1.0021	NaN	1	1	Median	0.774	0.94452	NaN	1	0	Median	1.2118	1.162	36.648	3	2	Median	1.2234	1.2341	6.3657	3	2	Plateau	669580000	293720000	375850000	20954000	6151000	14803000	27094000	18096000	8997200	75661000	34003000	41657000	545870000	235470000	310400000	1757	2757	1666	10382;10383;10384;10385;10386;10387;10388;10389	14065;14066;14067;14068;14069;14070;14071;14072;14073;14074;14075;14076	14072			12	
AFPSDHYAIESQLQLHGLNIEESMR	0	Oxidation (M)	2900.3763	0.3763062	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	78.772	78.517	3	4.5847E-09	68128	160511_QHF_FH_JSI12i_3	75.646	68.771			1.0206	1.0363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0206	1.0363	NaN	1	0	Median	28757000	17894000	10864000	0	0	0	0	0	0	0	0	0	28757000	17894000	10864000	1758	2757	1666	10390	14077;14078	14077		2128	2	
AFPVLGIDYTHVR	0	Unmodified	1486.7932	0.79324869	1164	P19634	SLC9A1	Sodium/hydrogen exchanger 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	74.097	73.952	3	0.00038515	64208	160511_QHF_FH_JSI12i_3	59.898	51.794			1.0786	1.0672	37.309	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5113	1.3894	NaN	1	0	Median	0.76974	0.81976	NaN	1	1	Median	33441000	17337000	16104000	0	0	0	0	0	0	20843000	10746000	10096000	12598000	6590600	6007700	1759	1164	1667	10391;10392	14079;14080	14080			1	
AFPVLLLDTVPWYLR	0	Unmodified	1802.0131	0.013077874	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	1	3	5	3	101.96	99.686	2;3	1.9368E-159	89798	160511_QHF_FH_JSI12i_3	299.1	266.57			1.3436	1.409	15.884	11	5	Median	NaN	NaN	NaN	0	0	Median	1.072	1.2705	18.625	3	2	Median	1.4335	1.3547	20.471	5	2	Median	1.4258	1.4197	1.5992	3	1	Plateau	1338800000	573200000	765560000	0	0	0	313800000	128200000	185610000	706340000	308140000	398210000	318610000	136860000	181750000	1760	3943	1668	10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404	14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092	14089			12	
AFPYGNVAFPHLPGSAPSWPSLVDTSK	1	Unmodified	2841.4126	0.41261535	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.22	101.14	3	5.8626E-42	90176	160511_QHF_FH_JSI11i_3	177.52	169.23			0.8965	1.1435	24.623	4	0	Linear	0.76611	0.61636	NaN	1	0	Median	0.75629	0.88626	NaN	1	0	Median	1.0491	1.0015	NaN	1	0	Median	1.0594	1.0706	NaN	1	0	Median	1485500000	703820000	781670000	131260000	74222000	57041000	261620000	144890000	116730000	422850000	187060000	235790000	669750000	297650000	372110000	1761	3143	1669	10405;10406;10407;10408	14093;14094;14095;14096;14097;14098;14099;14100	14093			8	
AFQAAFR	0	Unmodified	809.41842	0.41842242	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.414	30.349	2	0.011653	25585	160511_QHF_FH_JSI12i_3	61.123	18.349			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1762	2605	1670	10409	14101	14101			1	
AFQATQQK	1	Unmodified	920.47158	0.4715802	3747	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	9.4411	8.7875	2	0.0010017	6539	160511_QHF_FH_JSI12i_2	95.352	73.581			1.0021	1.0789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0021	1.0789	NaN	1	0	Median	25835000	14600000	11235000	0	0	0	0	0	0	0	0	0	25835000	14600000	11235000	1763	3747	1671	10410	14102	14102			1	
AFQEGIAK	1	Unmodified	862.45487	0.45486751	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	22.31	21.567	2	0.0086378	18376	160511_QHF_FH_JSI9i_2	66.429	14.027			1.0739	1.0159	34.476	2	2	Median	0.91655	0.79614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2582	1.2964	NaN	1	1	Median	128830000	57273000	71553000	56580000	27431000	29149000	0	0	0	0	0	0	72246000	29842000	42404000	1764	5330	1672	10411;10412	14103;14104	14104			2	
AFQEGIAKAK	2	Acetyl (K)	1103.5975	0.597509	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	2	1	42.015	32.047	2	0.003464	18374	160513_QHF_FH_JSI10Kac_4	74.92	51.491			1.2973	1.3724	71.627	2	1	Median	NaN	NaN	NaN	0	0	Median	0.69917	0.82702	NaN	1	0	Median	2.4072	2.2774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7061100	4047900	3013200	0	0	0	2909700	1343600	1566100	1871500	424440	1447100	2279900	2279900	0	1765	5330	1673	10413;10414;10415;10416	14105;14106;14107;14108;14109	14105	3366		5	
AFQGLLDTYSVWR	0	Unmodified	1554.7831	0.78307794	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	1	3	4	91.775	88.735	2;3	9.7802E-25	43390	160513_QHF_FH_JSI11Kac_6	163.12	130.62			0.94654	0.94477	21.137	10	4	Median	1.1465	0.97483	17.94	3	2	Median	0.87871	1.0639	NaN	1	1	Median	0.95168	0.91564	37.755	3	1	Median	0.88461	0.90426	9.39	3	0	Median	990790000	469920000	520870000	183600000	81921000	101680000	88578000	48424000	40153000	318860000	141080000	177780000	399750000	198490000	201260000	1766	3167	1674	10417;10418;10419;10420;10421;10422;10423;10424;10425;10426;10427	14110;14111;14112;14113;14114;14115;14116;14117;14118;14119;14120;14121;14122;14123	14115			14	
AFQKAVK	2	Acetyl (K);Acetyl (Protein N-term)	874.49125	0.49125301	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	1	1	0	1			By MS/MS		12	0					1							1		53.441	44.009	2	0.035594	18268	160513_QHF_FH_JSI11Kac_2	40.103	23.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1767	1558	1675	10428	14124	14124			1	
AFQKIVVLFYK	2	Unmodified	1354.8013	0.80129418	5722;3218	Q9Y6E2;Q7L1Q6	BZW2;BZW1	Basic leucine zipper and W2 domain-containing protein 2;Basic leucine zipper and W2 domain-containing protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			79.282	72.092	3	9.5162E-06	38467	160513_QHF_FH_JSI9Kac_6	104.79	85.966			0.69422	0.69925	94.633	2	2	Median	0.42494	0.35811	NaN	1	1	Median	1.1342	1.3653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63793000	37588000	26205000	31840000	17845000	13995000	31953000	19743000	12211000	0	0	0	0	0	0	1768	5722;3218	1676	10429;10430	14125;14126	14125			2	
AFQNVFAPR	0	Unmodified	1048.5454	0.54541385	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			36.218	34.978	2;3	2.3473E-08	41109	160511_QHF_FH_JSI10i_3	150.17	131.07			0.84761	0.98972	78.554	3	1	Plateau	0.61826	0.49747	95.849	2	1	Median	0.84761	0.98972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	477150000	270030000	207120000	235000000	129920000	105080000	242150000	140110000	102040000	0	0	0	0	0	0	1769	1081	1677	10431;10432;10433	14127;14128;14129;14130;14131;14132	14128			6	
AFQSVLEVVAAPGSPYHR	0	Unmodified	1926.9952	0.99519598	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.631	77.236	3	0.0051669	63507	160511_QHF_FH_JSI9i_3	44.391	34.25			1.9099	1.5955	NaN	1	1	Median	1.9099	1.5955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16010000	6540200	9469800	16010000	6540200	9469800	0	0	0	0	0	0	0	0	0	1770	1549	1678	10434	14133	14133			1	
AFQYADGLEQLR	0	Unmodified	1409.6939	0.69392858	4436	Q9BU89	DOHH	Deoxyhypusine hydroxylase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	64.783	63.86	2	4.1899E-05	54821	160511_QHF_FH_JSI12i_2	102.06	90.897			1.0848	1.0656	2.3881	3	0	Plateau	1.1741	1.0176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0848	1.0656	NaN	1	0	Median	0.95268	1.0303	NaN	1	0	Median	170260000	79119000	91142000	42708000	19238000	23470000	0	0	0	82369000	36553000	45816000	45183000	23328000	21855000	1771	4436	1679	10435;10436;10437	14134;14135	14134			2	
AFQYVETHGEVCPANWTPDSPTIK	1	Unmodified	2746.2697	0.26971586	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	71.841	71.326	3;4	1.7492E-16	63489	160511_QHF_FH_JSI11i_3	121.39	115.86			0.93325	1.009	13.7	8	0	Median	1.1925	1.0053	NaN	1	0	Median	0.84337	1.0151	NaN	1	0	Median	0.87891	0.84001	5.738	3	0	Plateau	1.1113	1.1467	8.9366	3	0	Median	1209900000	612260000	597640000	49792000	20378000	29413000	146560000	80508000	66050000	588860000	288810000	300040000	424690000	222560000	202130000	1772	1338	1680	10438;10439;10440;10441;10442;10443;10444;10445	14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157	14136			22	
AFQYVETHGEVCPANWTPDSPTIKPSPAASK	2	Unmodified	3384.6085	0.60849098	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	3	1		68.3	67.247	4;5	9.424E-28	59843	160511_QHF_FH_JSI11i_3	122.68	117.68			0.79243	0.97274	17.721	5	1	Median	1.4425	1.1952	NaN	1	0	Median	0.83432	0.97778	7.1011	3	1	Plateau	0.77042	0.73911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	719180000	406340000	312840000	71588000	22398000	49190000	332900000	197000000	135900000	314700000	186950000	127750000	0	0	0	1773	1338	1681	10446;10447;10448;10449;10450	14158;14159;14160;14161;14162;14163;14164;14165;14166;14167	14158			10	
AFREEAIK	1	Unmodified	962.51853	0.5185304	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							4	2	2		16.675	15.94	2;3	0.0046998	12899	160511_QHF_FH_JSI10i_3	100.02	52.443			1.5402	1.3814	11.953	8	0	Median	1.8283	1.4713	9.7839	4	0	Median	1.0842	1.2374	2.2202	2	0	Median	1.3645	1.2946	8.352	2	0	Median	NaN	NaN	NaN	0	0	Median	7005800000	3033800000	3971900000	2365000000	991230000	1373700000	1933600000	922970000	1010600000	2707200000	1119600000	1587600000	0	0	0	1774	1024	1682	10451;10452;10453;10454;10455;10456;10457;10458	14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178;14179;14180;14181;14182	14173			15	
AFREEAIKFSEEQR	1	Acetyl (K)	1780.8744	0.87441214	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		57.435	47.709	3	0.0015201	25818	160513_QHF_FH_JSI11Kac_6	80.706	64.278			0.24754	0.2407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24754	0.2407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14659000	12350000	2309500	0	0	0	0	0	0	14659000	12350000	2309500	0	0	0	1775	1024	1683	10459	14183	14183	843		1	
AFREEFGAEPELAVSAPGR	0	Unmodified	2032.0014	0.0014035686	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.257	62.754	3	4.6321E-05	52597	160511_QHF_FH_JSI10i_3	69.747	61.459			1.1439	1.102	5.2252	2	0	Median	1.4099	1.1435	NaN	1	0	Median	0.92818	1.062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135510000	46943000	88570000	86426000	28444000	57982000	49087000	18499000	30588000	0	0	0	0	0	0	1776	1739	1684	10460;10461	14184;14185;14186	14185			3	
AFSAAVQMHDVLVK	1	Unmodified	1514.7915	0.79153413	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.347	60.52	3	5.1607E-05	51959	160511_QHF_FH_JSI12i_3	82.102	63.371			1.3142	1.3096	46.849	4	1	Median	1.8461	1.5422	NaN	1	1	Median	0.48902	0.56194	NaN	1	0	Median	1.5779	1.4872	NaN	1	0	Median	1.0945	1.1532	NaN	1	0	Median	179040000	96180000	82865000	12596000	4771600	7824700	50301000	32008000	18293000	41567000	21074000	20493000	74580000	38326000	36254000	1777	5618	1685	10462;10463;10464;10465	14187;14188;14189	14189			2	
AFSAFVGQMHQQGILK	1	Unmodified	1760.9032	0.90320985	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	3	1	2	1	72.099	66.059	2;3	3.5138E-12	36152	160513_QHF_FH_JSI10Kac_6	131.86	108.72			0.96021	1.0369	30.14	6	3	Median	0.98887	0.83385	55.169	2	2	Median	0.86703	1.0328	NaN	1	0	Median	0.90102	0.87108	25.19	2	1	Median	1.0997	1.1449	NaN	1	0	Median	544630000	282240000	262390000	177030000	78214000	98815000	121770000	71981000	49789000	227060000	123620000	103430000	18776000	8427000	10349000	1778	21	1686	10466;10467;10468;10469;10470;10471;10472	14190;14191;14192;14193;14194	14194			5	
AFSAFVGQMHQQGILK	1	Oxidation (M)	1776.8981	0.89812447	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				63.937	54.978	3	0.0040099	29200	160513_QHF_FH_JSI9Kac_6	46.41	36.071			0.75513	0.64669	NaN	1	0	Median	0.75513	0.64669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14364000	5631200	8732500	14364000	5631200	8732500	0	0	0	0	0	0	0	0	0	1779	21	1686	10473	14195	14195		4	1	
AFSDPFVEAEK	1	Unmodified	1238.5819	0.58191851	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.78	4	4	2				2	2		3	4	4	3	62.845	58.953	2	2.8184E-13	52377	160511_QHF_FH_JSI9i_1	150.61	118.29			0.99615	1.0488	14.703	13	3	Median	1.1107	0.90854	5.1447	3	1	Plateau	0.88692	1.0562	6.668	4	1	Median	1.0863	1.0832	17.572	3	0	Plateau	0.99386	1.0491	24.618	3	1	Median	4020200000	1924800000	2095400000	891430000	432040000	459390000	961350000	511350000	450010000	1237900000	555150000	682790000	929510000	426290000	503220000	1780	1417	1687	10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487	14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217;14218;14219;14220;14221;14222;14223;14224;14225;14226	14217			31	
AFSETEQTK	1	Unmodified	1039.4822	0.48220447	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	13.805	9.9244	2	1.2067E-06	8977	160511_QHF_FH_JSI12i_1	133.86	124.27			0.89941	0.92022	12.089	8	0	Median	1.0166	0.82447	NaN	1	0	Median	0.85499	1.0104	3.0538	2	0	Median	0.99016	0.95738	14.142	3	0	Median	0.79174	0.84631	4.4664	2	0	Median	2186900000	1152600000	1034300000	421510000	190850000	230650000	609380000	328980000	280400000	504520000	248260000	256260000	651520000	384490000	267030000	1781	5722	1688	10488;10489;10490;10491;10492;10493;10494;10495	14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238	14229			12	
AFSGSGNR	0	Unmodified	794.36712	0.36711513	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				5.3155	4.9217	2	0.0053926	2865	160511_QHF_FH_JSI9i_2	65.777	37.248			1.328	1.1302	NaN	1	0	Median	1.328	1.1302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82745000	34175000	48570000	82745000	34175000	48570000	0	0	0	0	0	0	0	0	0	1782	3902	1689	10496	14239	14239			1	
AFSGSGNRLDGK	1	Unmodified	1207.5945	0.59454889	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			14.44	13.526	3	0.0078527	10604	160511_QHF_FH_JSI9i_3	43.502	33.451			1.0617	1.0351	14.037	2	0	Median	1.1304	0.93728	NaN	1	0	Median	0.99719	1.1431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172870000	86018000	86857000	99847000	47180000	52667000	73027000	38838000	34189000	0	0	0	0	0	0	1783	3902	1690	10497;10498	14240	14240			1	
AFSGYLGTDQSK	1	Unmodified	1272.5986	0.59863121	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.85	5	4	1				1	1		3	2	3	4	41.099	38.39	2	1.3218E-10	32801	160511_QHF_FH_JSI12i_2	141.88	130.73			1.0696	1.0378	20.681	10	2	Median	1.1278	0.96547	14.29	2	1	Median	0.80542	0.96592	2.8332	2	1	Median	0.99719	0.97598	22.438	3	0	Plateau	0.97713	1.0633	25.702	3	0	Plateau	1663600000	872710000	790900000	278620000	132180000	146440000	380780000	229570000	151210000	593320000	300760000	292560000	410890000	210200000	200690000	1784	979	1691	10499;10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510	14241;14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253;14254;14255;14256	14244			15	
AFSHPSNWAGFMLIGSDVK	1	Unmodified	2062.9935	0.99348142	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	85.295	75.852	3	0.017693	40423	160513_QHF_FH_JSI12Kac_6	41.615	32.2			2.0625	2.2165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0625	2.2165	NaN	1	1	Median	28965000	6770700	22194000	0	0	0	0	0	0	0	0	0	28965000	6770700	22194000	1785	3974	1692	10511	14257	14257			1	
AFSIDIIR	0	Unmodified	933.52837	0.5283668	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.545	69.748	2	0.051543	61976	160511_QHF_FH_JSI10i_2	45.718	17.206			0.93104	1.1487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93104	1.1487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9550100	5331700	4218400	0	0	0	9550100	5331700	4218400	0	0	0	0	0	0	1786	5458	1693	10512	14258	14258			1	
AFSIGKMSTAK	2	Acetyl (K);Oxidation (M)	1197.6064	0.60635913	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	1	0	1	1	By MS/MS	By MS/MS		By MS/MS	14.9	0.639							2	4	1	2	2		3	46.528	36.413	2	0.002271	21184	160513_QHF_FH_JSI12Kac_4	66.435	25.447			1.0476	1.1544	67.848	7	2	Median	2.2518	1.8586	141.76	2	2	Median	0.6641	0.79026	12.219	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1623	1.2784	5.4661	3	0	Plateau	34299000	14342000	19957000	11118000	2549700	8568600	7163400	4030400	3133000	0	0	0	16017000	7761900	8255500	1787	238	1694	10513;10514;10515;10516;10517;10518;10519	14259;14260;14261;14262;14263;14264;14265;14266;14267;14268;14269	14264	132	103	11	
AFSIGKMSTAK	2	Acetyl (K)	1181.6114	0.6114445	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.445								3	8	2	3	3	3	61.318	51.398	2	2.0179E-08	28230	160513_QHF_FH_JSI10Kac_6	125.74	95.486			0.98998	0.97486	144.27	5	2	Median	NaN	NaN	NaN	0	0	Median	0.35909	0.41552	112.14	2	1	Median	3.2848	3.2193	168.94	2	1	Median	1.2338	1.3622	NaN	1	0	Median	91750000	36533000	55217000	9121100	9121100	0	25914000	18088000	7826300	28801000	5026300	23775000	27913000	4298100	23615000	1788	238	1694	10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530	14270;14271;14272;14273;14274;14275;14276;14277;14278;14279	14279	132		10	
AFSITQGLLK	1	Unmodified	1076.623	0.62299547	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	71.478	70.683	2	2.5104E-25	61058	160511_QHF_FH_JSI12i_3	183.65	148.35			0.82983	0.83439	10.444	9	4	Median	0.9163	0.75279	14.556	2	1	Median	0.71373	0.84442	1.9664	2	0	Median	0.8451	0.92028	6.7098	3	2	Plateau	0.84652	0.88736	15.906	2	1	Median	4192600000	2017800000	2174900000	647970000	302350000	345610000	666270000	336420000	329850000	1067600000	508180000	559440000	1810800000	870810000	939980000	1789	241	1695	10531;10532;10533;10534;10535;10536;10537;10538;10539	14280;14281;14282;14283;14284;14285;14286;14287;14288;14289;14290;14291;14292;14293;14294	14294			15	
AFSKDLPR	1	Acetyl (K)	974.51853	0.5185304	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		50.535	40.008	2	0.0016284	23514	160513_QHF_FH_JSI11Kac_4	91.853	73.123			0.83321	0.91162	108.99	2	1	Median	NaN	NaN	NaN	0	0	Median	1.6107	1.9702	NaN	1	0	Median	0.43102	0.42181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20839000	10850000	9988900	0	0	0	8757900	2754800	6003100	12081000	8095000	3985800	0	0	0	1790	527	1696	10540;10541	14295;14296	14296	272		2	
AFSLKTSTSAVR	1	Acetyl (K)	1308.7038	0.70376498	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		59.746	49.438	2	0.0014469	26741	160513_QHF_FH_JSI11Kac_6	80.834	60.547			0.1463	0.14283	108.78	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1463	0.14283	108.78	2	1	Median	NaN	NaN	NaN	0	0	Median	15216000	13345000	1871000	0	0	0	0	0	0	15216000	13345000	1871000	0	0	0	1791	3860	1697	10542;10543	14297;14298	14297	2969		2	
AFSLYANIDILRPYFDVEPAQVR	0	Unmodified	2696.3962	0.396237	4593	Q9GZM5	YIPF3	Protein YIPF3;Protein YIPF3, 36 kDa form III	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.329	89.609	3	6.5949E-09	51674	160513_QHF_FH_JSI10Kac_6	136.14	106.3			0.65343	0.77304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65343	0.77304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89186000	57902000	31284000	0	0	0	89186000	57902000	31284000	0	0	0	0	0	0	1792	4593	1698	10544	14299	14299			1	
AFSPTTVNTGR	0	Unmodified	1149.5778	0.57783619	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.21	3	4	4				1	2		3	5	4	2	30.261	27.597	2	1.4769E-09	23182	160511_QHF_FH_JSI12i_2	134.26	54.031			0.83829	0.9163	20.864	14	0	Median	1.4055	1.2121	22.052	3	0	Median	0.76074	0.92329	24.42	5	0	Median	0.89511	0.88941	16.04	4	0	Median	0.76175	0.81864	14.865	2	0	Median	1779300000	917460000	861830000	382820000	163040000	219780000	431540000	246310000	185240000	553900000	283560000	270340000	411030000	224550000	186480000	1793	1960	1699	10545;10546;10547;10548;10549;10550;10551;10552;10553;10554;10555;10556;10557;10558	14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314	14302			15	
AFSQFGK	1	Unmodified	783.39154	0.39153897	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.34	1	3	4					1	3	4	3	2	3	28.341	25.122	2	0.0077995	20405	160511_QHF_FH_JSI9i_3	86.086	49.499			1.0576	1.0645	20.934	10	4	Median	1.6773	1.3847	23.74	4	2	Linear	1.0152	1.1693	13.776	2	0	Median	1.0576	1.0314	12.131	2	1	Median	0.7364	0.79358	8.378	2	1	Median	4588200000	2269400000	2318800000	728520000	338220000	390300000	541480000	308230000	233250000	1318700000	612370000	706320000	1999500000	1010600000	988950000	1794	423	1700	10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570	14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329	14322			15	
AFSQFGKLER	1	Acetyl (K)	1223.6299	0.62987176	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	63.619	53.832	2	0.0037233	29122	160513_QHF_FH_JSI11Kac_6	73.985	33.983			0.56737	0.58714	58.609	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39799	0.38793	NaN	1	0	Median	0.80884	0.88864	NaN	1	0	Median	36849000	23879000	12971000	0	0	0	0	0	0	23487000	16407000	7079800	13363000	7472000	5890900	1795	423	1701	10571;10572	14330;14331	14330	211		2	
AFSQFSTLALHLR	0	Unmodified	1489.8041	0.80414773	2626	Q15072	ZNF146	Zinc finger protein OZF	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.317	72.569	3	0.0015773	39578	160513_QHF_FH_JSI10Kac_6	63.185	51.02			1.0528	1.2361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0528	1.2361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46089000	21562000	24526000	0	0	0	46089000	21562000	24526000	0	0	0	0	0	0	1796	2626	1702	10573	14332	14332			1	
AFSSPQEEEEAGFTGR	0	Unmodified	1740.7591	0.75910761	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		44.379	43.706	2	1.516E-05	39320	160511_QHF_FH_JSI10i_1	116.24	105.93			1.2158	0.99174	24.283	3	3	Median	1.2158	0.99174	NaN	1	1	Median	0.74769	0.84875	NaN	1	1	Median	1.4316	1.3665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70213000	27567000	42646000	16681000	5574100	11107000	20932000	11472000	9460300	32600000	10521000	22078000	0	0	0	1797	2520	1703	10574;10575;10576	14333;14334;14335	14334			3	
AFSVFLFNTENK	1	Unmodified	1415.7085	0.70851601	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.44		3	8					2	6	5	5	5	4	87.24	83.084	2;3	6.8265E-109	42193	160513_QHF_FH_JSI11Kac_6	269.59	242.99			0.97507	1.0246	14.007	19	1	Median	1.2837	1.0258	8.9315	5	0	Median	0.96689	1.1074	8.4102	5	1	Median	0.90264	0.86047	12.837	5	0	Median	0.81943	0.84987	12.761	4	0	Median	8037000000	4067000000	3970000000	1877100000	847290000	1029800000	2302900000	1087300000	1215500000	2262700000	1208100000	1054600000	1594300000	924310000	670020000	1798	2480	1704	10577;10578;10579;10580;10581;10582;10583;10584;10585;10586;10587;10588;10589;10590;10591;10592;10593;10594;10595	14336;14337;14338;14339;14340;14341;14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377	14349			42	
AFSVNIFK	1	Unmodified	924.5069	0.50690308	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.6	6.59		3	4					2	6	5	4	4	2	71.078	67.405	2	2.3633E-05	55779	160511_QHF_FH_JSI9i_3	138.9	87.207			2.8153	0.89808	92.351	11	4	Linear	0.9778	0.78517	112.62	3	1	Plateau	0.78073	0.93938	97.069	4	2	Median	1.009	0.9285	100.83	3	1	Plateau	1.3193	1.3391	NaN	1	0	Median	5827600000	3577200000	2250400000	1329200000	967300000	361920000	1435900000	1034300000	401630000	1354700000	918500000	436230000	1707700000	657090000	1050600000	1799	996	1705	10596;10597;10598;10599;10600;10601;10602;10603;10604;10605;10606;10607;10608;10609;10610	14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392;14393;14394	14386			16	
AFSWASVTSK	1	Unmodified	1082.5397	0.53965977	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			57.346	55.798	2	0.00041082	46679	160511_QHF_FH_JSI10i_3	89.08	80.547			1.0362	1.0183	3.5262	2	0	Median	1.2649	1.044	NaN	1	0	Median	0.8488	0.99322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89969000	45847000	44123000	32719000	14919000	17800000	57250000	30927000	26323000	0	0	0	0	0	0	1800	5433	1706	10611;10612;10613	14395;14396;14397;14398;14399	14396			5	
AFSYYGPLR	0	Unmodified	1072.5342	0.53418046	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.68		4	2					2	4	4	3	3	2	58.725	53.413	2	5.5276E-33	28923	160513_QHF_FH_JSI11Kac_6	198.73	154.28			1.0367	1.0483	9.8657	12	0	Median	1.2135	1.0328	7.8242	4	0	Median	0.88648	1.0901	4.9572	3	0	Plateau	1.0497	0.98419	6.8428	3	0	Plateau	0.81509	0.88751	5.6755	2	0	Median	3046800000	1472500000	1574300000	1018000000	450510000	567500000	531440000	280360000	251080000	1275200000	615010000	660190000	222190000	126650000	95537000	1801	2745	1707	10614;10615;10616;10617;10618;10619;10620;10621;10622;10623;10624;10625	14400;14401;14402;14403;14404;14405;14406;14407;14408;14409;14410;14411;14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422	14407			23	
AFTDVPSIQIYSSR	0	Unmodified	1582.7991	0.79912193	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.019	72.744	2	0.0068471	63834	160511_QHF_FH_JSI11i_2	51.092	36.12			0.90669	0.9918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90669	0.9918	NaN	1	0	Median	18374000	12540000	5833900	0	0	0	0	0	0	0	0	0	18374000	12540000	5833900	1802	476	1708	10626;10627	14423;14424	14424			2	
AFTEGAVLSFHNICYR	0	Unmodified	1883.8989	0.89885275	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	73.099	71.181	3	7.6023E-06	60112	160511_QHF_FH_JSI10i_3	98.943	94.841			0.99029	1.0281	20.693	5	1	Median	1.9326	1.582	NaN	1	1	Median	0.85375	0.99913	8.9269	2	0	Median	1.0957	1.0281	NaN	1	0	Median	0.99029	1.0047	NaN	1	0	Median	541970000	294970000	247010000	20392000	9220600	11172000	411940000	226270000	185670000	58466000	31224000	27241000	51177000	28255000	22922000	1803	5445	1709	10628;10629;10630;10631;10632	14425;14426;14427;14428;14429;14430	14427			4	
AFTELQAK	1	Unmodified	906.48108	0.48108226	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.87	3	4					2	1		1	3	4	2	32.105	28.703	2	0.0014339	24872	160511_QHF_FH_JSI9i_2	89.55	41.701			0.97497	1.0737	21.252	10	0	Median	0.93417	0.79367	NaN	1	0	Median	0.7743	0.90949	23.473	3	0	Median	1.1247	1.1233	14.204	4	0	Median	1.1599	1.2451	22.28	2	0	Median	1590700000	794810000	795880000	201690000	99879000	101810000	466240000	255870000	210380000	508840000	231820000	277010000	413920000	207240000	206680000	1804	461	1710	10633;10634;10635;10636;10637;10638;10639;10640;10641;10642	14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443	14440			13	
AFTGEGQK	1	Unmodified	836.40283	0.40283194	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		8.4077	8.0711	2	0.0030985	5851	160511_QHF_FH_JSI9i_2	75.109	44.924			1.2362	1.1381	2.6413	2	0	Median	1.3625	1.1596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1216	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	169630000	75667000	93966000	82599000	36005000	46594000	0	0	0	87035000	39663000	47372000	0	0	0	1805	5453	1711	10643;10644	14444;14445	14444			2	
AFTGFIVEADTPGIQIGR	0	Unmodified	1890.984	0.98396259	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	5	3	3	93.546	93.157	2;3	8.406E-53	80593	160511_QHF_FH_JSI12i_3	218.85	202.32			0.94731	0.97969	14.414	12	2	Median	1.1546	0.98775	27.583	2	0	Median	0.8555	1.0327	14.254	4	1	Median	1.0988	0.99275	11.002	3	0	Plateau	1.0078	1.0222	12.043	3	1	Median	314130000	154450000	159680000	46765000	20763000	26002000	69382000	34296000	35086000	83695000	45252000	38443000	114290000	54137000	60154000	1806	997	1712	10645;10646;10647;10648;10649;10650;10651;10652;10653;10654;10655;10656;10657	14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456;14457;14458;14459;14460;14461;14462;14463;14464;14465	14463			20	
AFTGREFDELNPSAQR	0	Unmodified	1836.8755	0.87547477	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	4	2	1	52.803	51.916	2;3	2.0543E-16	45824	160511_QHF_FH_JSI10i_2	168.41	161			1.1231	1.3203	16.967	10	1	Median	1.561	1.3767	14.57	3	0	Median	1.1047	1.3745	3.7447	4	1	Linear	1.0898	1.0041	1.1679	2	0	Median	0.96728	1.1009	NaN	1	0	Median	1366900000	603920000	763010000	414450000	158000000	256460000	619010000	305980000	313020000	260140000	106760000	153390000	73324000	33183000	40141000	1807	1103	1713	10658;10659;10660;10661;10662;10663;10664;10665;10666;10667	14466;14467;14468;14469;14470;14471;14472;14473;14474;14475;14476;14477;14478;14479	14475			14	
AFTHTAQYDEAISDYFR	0	Unmodified	2033.9119	0.91191986	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		6	6						3	3	5	3	4	71.626	69.239	2;3	2.0583E-65	60243	160511_QHF_FH_JSI12i_3	273.3	259.49			0.93773	0.88773	20.342	13	3	Median	1.1965	1.018	22.361	3	1	Median	0.69869	0.84407	24.954	3	0	Median	0.93773	0.88773	4.4166	3	0	Median	0.88099	0.93074	27.53	4	2	Median	1585800000	841300000	744520000	195150000	85084000	110070000	208430000	127320000	81112000	535710000	279890000	255820000	646530000	349010000	297520000	1808	1381	1714	10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678;10679;10680;10681;10682	14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497;14498;14499;14500;14501;14502;14503;14504	14501			25	
AFTHTAQYDEAISDYFRK	1	Unmodified	2162.0069	0.006882877	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	4.8		2	14						3	8	6	3	2	66.878	64.348	3;4	1.3028E-31	56709	160511_QHF_FH_JSI11i_3	188.96	181.43			0.90891	0.94526	27.069	17	3	Median	1.0761	0.94526	20.271	7	1	Median	0.68919	0.83378	21.971	5	1	Median	0.7336	0.67511	44.639	3	1	Plateau	0.77309	0.79104	35.581	2	0	Median	1666400000	801060000	865390000	545340000	242820000	302530000	542870000	291660000	251210000	494740000	211720000	283010000	83497000	54855000	28642000	1809	1381	1715	10683;10684;10685;10686;10687;10688;10689;10690;10691;10692;10693;10694;10695;10696;10697;10698;10699;10700;10701	14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516;14517;14518;14519;14520;14521;14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536;14537	14506			33	
AFTHYSTYVLHER	0	Unmodified	1622.7841	0.78414057	2548	Q14592	ZNF460	Zinc finger protein 460	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			48.205	39.288	4	0.00013358	21497	160513_QHF_FH_JSI10Kac_6	77.776	57.937			1.0364	1.0374	4.3317	2	0	Median	1.1767	1.0061	NaN	1	0	Median	0.9128	1.0697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20766000	10655000	10110000	4269300	1919900	2349400	16496000	8735300	7761000	0	0	0	0	0	0	1810	2548	1716	10702;10703	14538;14539;14540	14540			2	
AFTKPEEACSFILSADFPALVVK	2	Unmodified	2539.3032	0.30324782	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	101.33	101.34	3;4	3.4005E-15	87977	160511_QHF_FH_JSI12i_3	125.58	111.71			1.1149	1.1114	33.35	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0948	1.0408	NaN	1	0	Median	1.4584	1.4574	38.328	2	0	Median	1343300000	689290000	654040000	0	0	0	0	0	0	250040000	143670000	106360000	1093300000	545620000	547680000	1811	1205	1717	10704;10705;10706	14541;14542	14541			2	
AFTKYCK	2	Acetyl (K)	958.45824	0.45823833	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	33.818	24.263	2	0.058137	14324	160513_QHF_FH_JSI11Kac_5	57.559	22.751			0.27846	0.27707	89.982	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4533	1.6717	NaN	1	0	Median	0.27846	0.27707	NaN	1	0	Median	0.5625	0.629	NaN	1	0	Median	31467000	24245000	7221400	0	0	0	3098900	1376500	1722400	24104000	20314000	3789800	4263500	2554300	1709200	1812	1484	1718	10707;10708;10709	14543	14543			1	
AFTLGLAGLLGEGVFNFGELLMHPVLESLR	0	Oxidation (M)	3215.7053	0.70529189	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			102.09	96.373	4	3.3645E-29	56950	160513_QHF_FH_JSI10Kac_6	128.3	121.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	222840000	98831000	124010000	0	0	0	222840000	98831000	124010000	0	0	0	0	0	0	1813	5441	1719	10710	14544	14544		2659	1	
AFTLGLAGLLGEGVFNFGELLMHPVLESLR	0	Unmodified	3199.7104	0.71037727	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.57	98.852	3;4	2.8823E-185	58504	160513_QHF_FH_JSI10Kac_6	286.37	272.47			0.93631	1.1092	7.7593	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93631	1.1092	7.7593	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1786400000	756650000	1029700000	0	0	0	1786400000	756650000	1029700000	0	0	0	0	0	0	1814	5441	1719	10711;10712	14545;14546	14545			2	
AFTMDCITLEGDQVSHR	0	Unmodified	1978.8877	0.88769572	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	64.878	64.733	3	0.00018214	57533	160511_QHF_FH_JSI11i_3	82.349	78.508			1.2608	1.2095	31.324	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0684	0.96918	NaN	1	0	Median	1.4877	1.5094	NaN	1	0	Median	98351000	43758000	54593000	0	0	0	0	0	0	52018000	24260000	27758000	46332000	19498000	26834000	1815	5479	1720	10713;10714	14547	14547			0	
AFTNTATATEEDVK	1	Unmodified	1496.6995	0.69946747	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.746	31.174	2	3.5433E-06	28052	160511_QHF_FH_JSI12i_1	120.77	100.78			0.60538	0.63597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60538	0.63597	NaN	1	1	Median	23693000	14285000	9408600	0	0	0	0	0	0	0	0	0	23693000	14285000	9408600	1816	2910	1721	10715	14548	14548			1	
AFTPFSGPK	1	Unmodified	950.48617	0.48616764	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		44.639	43.956	2	0.00034833	36764	160511_QHF_FH_JSI10i_3	91.853	66.931			0.95419	0.95587	148.8	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2342	1.4313	NaN	1	1	Median	0.30356	0.29496	166.28	2	1	Median	NaN	NaN	NaN	0	0	Median	1882600000	1595100000	287520000	0	0	0	182000000	88118000	93879000	1700600000	1506900000	193640000	0	0	0	1817	1022	1722	10716;10717;10718	14549;14550;14551	14550			3	
AFTSWTANTGIEACR	0	Unmodified	1683.7675	0.76750423	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	59.599	59.002	2	1.6932E-11	49249	160511_QHF_FH_JSI10i_3	106.49	73.083			0.98386	0.97095	13.743	3	2	Median	NaN	NaN	NaN	0	0	Median	0.98386	1.1481	NaN	1	1	Median	1.0673	0.97095	NaN	1	0	Median	0.82974	0.87428	NaN	1	1	Median	66081000	37235000	28846000	0	0	0	14855000	8767100	6087600	32906000	16397000	16508000	18321000	12070000	6250400	1818	2624	1723	10719;10720;10721;10722	14552;14553;14554;14555;14556	14555			5	
AFTTTLNLLPYHK	1	Unmodified	1517.8242	0.82421447	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.71		2	10						4	4	4	4	4	75.156	72.386	2;3	4.3111E-31	61761	160511_QHF_FH_JSI10i_3	194.54	173.67			0.97628	1.0082	11.401	15	5	Median	1.2662	1.0445	5.9417	4	1	Median	0.8537	1.0013	11.299	4	1	Median	1.0265	0.9857	17.276	4	2	Median	0.96604	0.96496	13.922	3	1	Plateau	3229200000	1581400000	1647700000	661090000	303340000	357750000	656630000	355850000	300790000	798930000	369930000	428990000	1112500000	552320000	560190000	1819	387	1724	10723;10724;10725;10726;10727;10728;10729;10730;10731;10732;10733;10734;10735;10736;10737;10738	14557;14558;14559;14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574;14575;14576;14577;14578;14579;14580;14581;14582;14583;14584;14585;14586;14587	14567			31	
AFTVKPEGR	1	Unmodified	1003.5451	0.5450795	4095	Q96GQ5	C16orf58	RUS1 family protein C16orf58	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			18.376	17.257	3	0.0083892	13829	160511_QHF_FH_JSI9i_3	42.395	26.192			0.74005	0.71895	22.165	2	0	Median	1.0275	0.84094	NaN	1	0	Median	0.533	0.61465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113610000	61754000	51860000	60973000	29579000	31395000	52641000	32175000	20466000	0	0	0	0	0	0	1820	4095	1725	10739;10740	14588	14588			1	
AFTYINLDK	1	Unmodified	1083.5601	0.56006086	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.51	3	4	4				3	6	4	5	6	6	7	64.402	58.73	2	2.4496E-08	51731	160511_QHF_FH_JSI9i_2	149.94	115.13			0.90557	0.93318	33.226	23	3	Median	0.99024	0.83605	15.849	5	0	Median	0.77984	0.92539	28.801	6	1	Median	0.90557	0.88225	13.842	5	1	Median	1.0518	1.0792	46.282	7	1	Median	5512600000	2953400000	2559200000	893730000	446660000	447070000	1351500000	825540000	526000000	1773200000	861080000	912110000	1494100000	820090000	674050000	1821	793	1726	10741;10742;10743;10744;10745;10746;10747;10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762;10763;10764	14589;14590;14591;14592;14593;14594;14595;14596;14597;14598;14599;14600;14601;14602;14603;14604;14605;14606;14607;14608;14609;14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620;14621;14622;14623;14624;14625;14626	14610			38	
AFTYTVAASGGGGVNMGSHQK	1	Unmodified	2038.9531	0.95307317	5275	Q9UEY8	ADD3	Gamma-adducin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		46.037	44.455	3	1.218E-09	37125	160511_QHF_FH_JSI10i_3	81.665	71.566			0.94269	0.92937	4.3885	2	1	Median	1.1458	0.95867	NaN	1	1	Median	0.77558	0.90098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61945000	27845000	34100000	33680000	11352000	22327000	28265000	16492000	11773000	0	0	0	0	0	0	1822	5275	1727	10765;10766;10767	14627;14628;14629	14628			3	
AFVAGVLPFK	1	Unmodified	1047.6117	0.6117025	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22		4	4					1	1	4	2	2	2	80.322	77.795	2	1.5726E-08	70468	160511_QHF_FH_JSI11i_3	126.67	115.79			1.0558	1.0066	9.3745	10	0	Median	1.1291	0.93529	7.3644	4	0	Median	0.89208	1.0451	4.3037	2	0	Median	1.0415	1.0151	6.6292	2	0	Median	1.0399	1.1034	13.983	2	0	Median	1033200000	513450000	519780000	209000000	109810000	99183000	202910000	113880000	89027000	309830000	143070000	166760000	311480000	146680000	164810000	1823	134	1728	10768;10769;10770;10771;10772;10773;10774;10775;10776;10777	14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648	14630			19	
AFVAIGDYNGHVGLGVK	1	Unmodified	1715.8995	0.89950468	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	4.98		8	17						5	7	5	7	11	69.819	68.61	2;3	6.6757E-85	36858	160513_QHF_FH_JSI10Kac_6	266.78	231.23			0.9591	0.93335	33.705	25	7	Median	1.2931	1.056	32.698	5	0	Median	0.7574	0.87266	53.956	5	1	Median	1.0584	0.99411	31.283	6	2	Median	0.92684	0.93335	18.595	9	4	Median	13742000000	7065700000	6676700000	644740000	262570000	382160000	1728500000	1028600000	699970000	3202000000	1553600000	1648400000	8167100000	4220900000	3946200000	1824	1084	1729	10778;10779;10780;10781;10782;10783;10784;10785;10786;10787;10788;10789;10790;10791;10792;10793;10794;10795;10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806;10807	14649;14650;14651;14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684;14685;14686;14687;14688;14689;14690;14691;14692;14693;14694;14695;14696;14697	14697			47	
AFVATQGATVVDQTTLMK	1	Acetyl (Protein N-term)	1921.9819	0.98191368	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	97.281	96.817	2	9.7453E-08	87770	160511_QHF_FH_JSI12i_1	96.745	82.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5094800	0	5094800	5094800	0	5094800	0	0	0	0	0	0	0	0	0	1825	5618	1730	10808;10809	14698;14699	14698			2	
AFVDFLSDEIK	1	Unmodified	1282.6445	0.64451877	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.06	4	4	4					4	1	4	4	4	5	87.715	84.311	2	9.0719E-38	78097	160511_QHF_FH_JSI10i_2	202.05	172.58			0.95542	0.97983	17.334	17	0	Median	1.1649	0.95696	7.0126	4	0	Median	0.83604	0.97621	6.2506	4	0	Median	0.99776	0.97998	8.1592	4	0	Median	0.95038	1.0207	31.78	5	0	Median	8166400000	4106000000	4060400000	1588500000	744100000	844450000	1860700000	1030400000	830280000	2553200000	1214200000	1339000000	2164000000	1117300000	1046700000	1826	2251	1731	10810;10811;10812;10813;10814;10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826	14700;14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713;14714;14715;14716;14717;14718;14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753;14754;14755	14747			56	
AFVDFLSDEIKEER	1	Unmodified	1696.8308	0.83081599	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	3	3	2	80.041	79.582	2;3	5.228E-15	69075	160511_QHF_FH_JSI12i_3	159.02	134.46			0.81833	0.90461	20.873	7	1	Median	1.2124	1.0316	NaN	1	0	Median	0.69643	0.82906	12.333	2	0	Median	0.6998	0.65565	19.232	2	0	Median	0.94761	0.96264	8.3653	2	1	Median	736660000	397450000	339220000	39266000	23143000	16123000	119320000	68754000	50563000	432770000	238360000	194400000	145310000	67187000	78126000	1827	2251	1732	10827;10828;10829;10830;10831;10832;10833;10834;10835	14756;14757;14758;14759;14760;14761;14762;14763;14764;14765;14766;14767;14768	14767			13	
AFVDFLSDEIKEERK	2	Unmodified	1824.9258	0.92577901	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		73.315	72.345	4	0.00014238	63909	160511_QHF_FH_JSI11i_3	71.344	67.85			0.91712	0.86483	38.974	3	2	Median	0.64994	0.54758	NaN	1	1	Median	1.043	1.189	NaN	1	1	Median	0.91712	0.86483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62435000	37680000	24755000	10865000	7598100	3267400	13967000	7863700	6102800	37603000	22218000	15385000	0	0	0	1828	2251	1733	10836;10837;10838	14769;14770;14771	14769			3	
AFVDFLSDEIKEERK	2	Acetyl (K)	1866.9363	0.9363437	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.829	73.583	3	7.5266E-17	38676	160513_QHF_FH_JSI12Kac_6	145.55	134.03			0.82658	0.89782	15.548	4	1	Median	1.0748	0.93533	NaN	1	0	Median	0.84561	0.99721	NaN	1	1	Median	0.73377	0.69775	NaN	1	0	Median	0.80798	0.86181	NaN	1	0	Median	1034900000	564150000	470800000	258390000	119480000	138900000	373400000	204280000	169130000	235300000	142440000	92856000	167860000	97946000	69913000	1829	2251	1733	10839;10840;10841;10842	14772;14773;14774;14775;14776;14777;14778	14776	2353		7	
AFVDFNEGEIK	1	Unmodified	1267.6085	0.60846762	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			61.603	61.215	2	0.0055296	55435	160511_QHF_FH_JSI10i_1	63.076	41.612			0.81559	0.97113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81559	0.97113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36854000	19970000	16884000	0	0	0	36854000	19970000	16884000	0	0	0	0	0	0	1830	2179	1734	10843	14779	14779			1	
AFVDVVNGEYVPRK	1	Unmodified	1591.8358	0.83584179	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		57.128	56.096	3	0.00010875	46828	160511_QHF_FH_JSI10i_3	72.417	68.101			0.50807	0.47384	33.401	3	1	Median	0.41017	0.33709	NaN	1	1	Median	0.54445	0.65742	NaN	1	0	Median	0.50807	0.47384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	235280000	134060000	101220000	28840000	19634000	9206600	89471000	52904000	36567000	116970000	61526000	55446000	0	0	0	1831	605	1735	10844;10845;10846	14780;14781;14782	14781			3	
AFVEAQNK	1	Unmodified	905.46068	0.46068117	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	17.155	12.912	2	0.0025673	10786	160511_QHF_FH_JSI12i_2	79.116	56.097			0.8455	0.88617	17.823	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79717	0.78124	NaN	1	0	Median	0.89676	1.0052	NaN	1	0	Median	85420000	40618000	44803000	0	0	0	0	0	0	13600000	8708800	4890900	71821000	31909000	39912000	1832	1615	1736	10847;10848	14783;14784	14783			2	
AFVEATFQR	0	Unmodified	1067.54	0.53999412	5050	Q9NVU0	POLR3E	DNA-directed RNA polymerase III subunit RPC5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.484								3	5	3	1	1	3	52.577	42.531	2	0.0010358	22172	160513_QHF_FH_JSI12Kac_6	71.501	44.247			1.0449	1.1104	14.464	6	2	Median	1.6471	1.3857	10.419	2	1	Median	0.92391	1.0935	NaN	1	0	Median	1.1508	1.1276	NaN	1	0	Median	0.93778	1.0341	0.90362	2	1	Median	55687000	23826000	31861000	20532000	7294600	13237000	3973900	2460000	1513900	13875000	6055100	7819900	17306000	8016100	9290300	1833	5050	1737	10849;10850;10851;10852;10853;10854;10855;10856	14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795	14795			11	
AFVEDSEDEDGAGEGGSSLLQK	1	Unmodified	2238.9764	0.97643019	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	56.582	56.093	2	5.3777E-70	50580	160511_QHF_FH_JSI10i_1	267.34	256.08			0.49738	0.47539	48.41	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.44785	0.50078	NaN	1	1	Median	0.49738	0.47539	NaN	1	1	Median	1.1359	1.1271	NaN	1	1	Median	55756000	28628000	27129000	0	0	0	20212000	7399700	12812000	21467000	15464000	6002800	14077000	5763600	8313700	1834	3580	1738	10857;10858;10859;10860	14796;14797;14798;14799	14799			4	
AFVELTK	1	Unmodified	806.4538	0.45380487	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	39.741	38.989	2	0.012734	34926	160511_QHF_FH_JSI10i_1	68.915	37.625			1.051	1.0534	17.887	6	0	Median	1.6135	1.3554	NaN	1	0	Median	0.80157	0.96004	1.5983	2	0	Median	1.051	1.0534	7.0329	2	0	Median	1.2989	1.4406	NaN	1	0	Median	514340000	238480000	275860000	61766000	22817000	38948000	136940000	71842000	65100000	215760000	98559000	117200000	99873000	45266000	54608000	1835	690	1739	10861;10862;10863;10864;10865;10866	14800;14801;14802	14802			3	
AFVENYPQFKK	2	Unmodified	1369.703	0.7030367	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	45.319	44.184	3	0.0011443	37585	160511_QHF_FH_JSI12i_3	54.259	39.906			0.91218	0.91508	5.7858	3	0	Median	1.0619	0.87051	NaN	1	0	Median	0.8533	0.97696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91218	0.91508	NaN	1	0	Median	173950000	87530000	86416000	35655000	22962000	12693000	59762000	32024000	27738000	0	0	0	78528000	32544000	45984000	1836	4967	1740	10867;10868;10869	14803;14804;14805	14805			3	
AFVESSKLK	2	Acetyl (K)	1049.5757	0.57571092	1261	P25490;Q96MM3	YY1;ZFP42	Transcriptional repressor protein YY1;Zinc finger protein 42 homolog	yes	no	1	0	0	1		By matching	By MS/MS	By MS/MS	14.2	0.433							3	1			2	1	1	48.711	38.374	2	0.007382	22712	160513_QHF_FH_JSI11Kac_4	67.494	50.254			0.75302	0.97683	20.478	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.90485	1.0483	5.1823	2	0	Median	0.69567	0.6834	NaN	1	0	Median	0.87367	0.94421	NaN	1	0	Median	33097000	18646000	14451000	0	0	0	12937000	7284300	5652800	12901000	7410200	5490400	7259000	3951400	3307600	1837	1261	1741	10870;10871;10872;10873	14806;14807;14808;14809	14807	1154		4	
AFVFMHK	1	Unmodified	878.44728	0.44727971	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	4	4	2	3	43.448	38.722	2;3	0.0016806	33403	160511_QHF_FH_JSI11i_3	88.591	77.222			0.92024	0.92082	24.216	13	5	Median	1.1078	0.92895	43.459	4	2	Median	0.77693	0.91449	14.042	4	2	Linear	1.0862	1.0179	1.3787	2	0	Median	0.85797	0.84618	9.5242	3	1	Plateau	888560000	433210000	455360000	280470000	121400000	159070000	201140000	105460000	95672000	129080000	60735000	68343000	277880000	145610000	132270000	1838	4863	1742	10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886	14810;14811;14812;14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823;14824;14825;14826;14827;14828;14829;14830;14831;14832	14811			23	
AFVGAFK	1	Unmodified	738.40646	0.40646075	3181	Q6ZNJ1	NBEAL2	Neurobeachin-like protein 2	yes	yes	0	0	0	0	By matching		By MS/MS		3	0			2							1		1		45.715	44.91	2	0.044925	39540	160511_QHF_FH_JSI11i_3	44.945	44.945			1.1544	1.012	1.1561	2	0	Median	1.2505	1.0203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0657	1.0038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134420000	58540000	75883000	76518000	33995000	42523000	0	0	0	57905000	24545000	33361000	0	0	0	1839	3181	1743	10887;10888	14833	14833			1	
AFVGNQLPFIGFTYYR	0	Unmodified	1891.9621	0.96210494	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.137	84.786	2;3	2.0471E-103	49512	160513_QHF_FH_JSI10Kac_6	249.2	207.8			0.70454	1.0736	14.213	4	0	Linear	1.5447	1.2927	NaN	1	0	Median	0.7639	0.91305	NaN	1	0	Median	1.1415	1.071	NaN	1	0	Median	1.0193	1.0761	NaN	1	0	Median	1333600000	697200000	636390000	198220000	75434000	122780000	670190000	395960000	274240000	202960000	91269000	111690000	262230000	134550000	127680000	1840	475	1744	10889;10890;10891;10892	14834;14835;14836;14837;14838;14839	14838			6	
AFVHWYVGEGMEEGEFSEAR	0	Unmodified	2329.011	0.010981977	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	78.427	71.737	3	8.3292E-35	38308	160513_QHF_FH_JSI11Kac_6	169.28	165.89			0.95329	0.93771	13.325	5	0	Median	1.0955	0.93893	NaN	1	0	Median	0.62426	0.7393	NaN	1	0	Median	1.0339	0.97982	12.27	2	0	Median	0.88045	0.93771	NaN	1	0	Median	474940000	275100000	199840000	72806000	31861000	40945000	251130000	168560000	82577000	110420000	51230000	59186000	40589000	23458000	17131000	1841	2073;2074;4359	1745	10893;10894;10895;10896;10897	14840;14841;14842;14843;14844;14845;14846	14841			6	
AFVHWYVGEGMEEGEFSEAR	0	Oxidation (M)	2345.0059	0.005896599	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	0	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	74.023	65.557	3	8.5099E-26	36217	160513_QHF_FH_JSI10Kac_6	151.95	149.07			0.8834	0.9788	7.1913	3	0	Median	1.2247	1.0688	NaN	1	0	Median	0.80991	0.9788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8834	0.92685	NaN	1	0	Median	132390000	68596000	63791000	35592000	18032000	17560000	64569000	34086000	30482000	0	0	0	32226000	16477000	15749000	1842	2073;2074;4359	1745	10898;10899;10900	14847;14848;14849	14849		1737	2	
AFVHWYVGEGMEEGEFSEAREDMAALEK	1	Unmodified	3216.4169	0.41685038	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	84.976	76.896	3;4	3.015E-84	43647	160513_QHF_FH_JSI10Kac_6	214	206.14			0.861	0.90196	36.826	7	0	Median	1.0919	0.93718	2.1425	2	0	Median	0.55972	0.6625	12.343	2	0	Median	0.95673	0.9373	79.523	2	0	Median	0.861	0.90196	NaN	1	0	Median	3006300000	1887800000	1118400000	684620000	331110000	353510000	2084700000	1421400000	663240000	128180000	79593000	48590000	108810000	55718000	53091000	1843	2073;2074;4359	1746	10901;10902;10903;10904;10905;10906;10907	14850;14851;14852;14853;14854;14855;14856;14857;14858;14859;14860;14861	14860			12	
AFVHWYVGEGMEEGEFSEAREDMAALEK	1	2 Oxidation (M)	3248.4067	0.40667963	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	2	1				By MS/MS	16	0									1				1	76.874	67.432	4	5.4433E-09	35509	160513_QHF_FH_JSI12Kac_6	86.236	80.516			0.92197	1.0053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92197	1.0053	NaN	1	0	Median	14879000	8460300	6418300	0	0	0	0	0	0	0	0	0	14879000	8460300	6418300	1844	2073;2074;4359	1746	10908	14862	14862		1737;1738	1	
AFVHWYVGEGMEEGEFSEAREDMAALEK	1	Oxidation (M)	3232.4118	0.411765	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	1	By matching	By MS/MS		By matching	16	0									4	1	2		1	81.235	73.883	4	5.6679E-34	39836	160513_QHF_FH_JSI10Kac_6	140.55	131.78			0.93831	0.97319	20.163	4	0	Median	1.1901	1.0213	NaN	1	0	Median	0.6975	0.83147	15.435	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1261	1.2085	NaN	1	0	Median	359390000	185240000	174150000	118700000	50529000	68171000	214300000	124840000	89463000	0	0	0	26392000	9872700	16519000	1845	2073;2074;4359	1746	10909;10910;10911;10912	14863;14864;14865;14866	14863		1737;1738	4	
AFVKMCK	2	Acetyl (K)	924.45613	0.45612984	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	1	0	0	1			By MS/MS		16	0									1			1		41.661	32.09	2	0.022195	17626	160513_QHF_FH_JSI11Kac_6	75.311	42.84			0.3389	0.3336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3389	0.3336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13539000	9843600	3695100	0	0	0	0	0	0	13539000	9843600	3695100	0	0	0	1846	1707	1747	10913	14867	14867	1719		1	
AFVLTLCHHQK	1	Unmodified	1352.7023	0.7023252	2387	Q13322	GRB10	Growth factor receptor-bound protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			44.966	36.354	3	0.0096697	20106	160513_QHF_FH_JSI10Kac_6	46.955	39.585			0.95743	1.1372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95743	1.1372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8026000	4293900	3732100	0	0	0	8026000	4293900	3732100	0	0	0	0	0	0	1847	2387	1748	10914	14868	14868			1	
AFVNSQIQGHK	1	Unmodified	1227.636	0.63601977	5686	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	1	4	2	18.707	18.327	2;3	3.543E-08	14817	160511_QHF_FH_JSI12i_3	123.79	112.26			0.88076	0.93044	24.848	6	1	Median	1.4056	1.1421	NaN	1	0	Median	0.78109	0.91194	NaN	1	0	Median	1.0397	0.99377	6.4714	2	1	Median	0.63587	0.64088	7.8446	2	0	Median	410360000	208640000	201710000	79036000	27132000	51904000	63541000	38031000	25510000	101160000	52929000	48234000	166610000	90552000	76063000	1848	5686	1749	10915;10916;10917;10918;10919;10920;10921;10922	14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880	14878			12	
AFVPAILFK	1	Unmodified	1004.6059	0.60588884	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	89.308	88.723	2	4.2777E-06	77062	160511_QHF_FH_JSI12i_3	119.89	92.362			0.98848	0.9915	5.9455	4	0	Median	1.3076	1.0732	NaN	1	0	Median	0.80915	0.98092	NaN	1	0	Median	1.0025	0.9296	NaN	1	0	Median	0.97462	1.0022	NaN	1	0	Median	392670000	196260000	196400000	98407000	38348000	60059000	79537000	44739000	34798000	78232000	36099000	42133000	136490000	77074000	59415000	1849	4829	1750	10923;10924;10925;10926	14881;14882;14883;14884	14884			3	
AFVPQLR	0	Unmodified	829.48102	0.48102268	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		45.309	44.254	2	0.015493	37023	160511_QHF_FH_JSI10i_3	64.563	35.225			1.0709	1	8.9811	3	0	Median	1.4323	1.1586	NaN	1	0	Median	0.85256	0.98458	NaN	1	0	Median	1.0709	1	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	181010000	84153000	96859000	63905000	26347000	37558000	66394000	34000000	32394000	50713000	23806000	26907000	0	0	0	1850	1737	1751	10927;10928;10929	14885	14885			1	
AFVRPSGTEDVVR	0	Unmodified	1431.747	0.74702678	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.965	33.522	3	0.0022628	27324	160511_QHF_FH_JSI9i_3	53.754	40.075			1.1693	0.93577	NaN	1	0	Median	1.1693	0.93577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150500000	80150000	70350000	150500000	80150000	70350000	0	0	0	0	0	0	0	0	0	1851	690	1752	10930	14886;14887	14887			2	
AFVSGFDGSAGTAIITEEHAAMWTDGR	0	Unmodified	2796.2813	0.28134318	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.033	90.967	3	5.684E-15	78954	160511_QHF_FH_JSI12i_3	93.093	85.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1852	4930	1753	10931	14888	14888			1	
AFVSLGAPWGGVAK	1	Unmodified	1358.7347	0.73467118	3615	Q8NCC3	PLA2G15	Group XV phospholipase A2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				81.312	79.971	2	0.00064195	65717	160511_QHF_FH_JSI9i_3	90.108	69.238			0.761	0.63834	NaN	1	1	Median	0.761	0.63834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15516000	9568400	5947300	15516000	9568400	5947300	0	0	0	0	0	0	0	0	0	1853	3615	1754	10932	14889	14889			1	
AFVSMVYSEEGAEDR	0	Unmodified	1688.7352	0.73520105	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	57.602	57.077	2	3.5571E-27	49181	160511_QHF_FH_JSI12i_3	151.1	141.44			1.0174	1.1413	5.4002	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1953	1.1676	9.0423	2	0	Median	1.0879	1.1413	0.71198	2	0	Median	217100000	103170000	113930000	0	0	0	0	0	0	94088000	43518000	50570000	123010000	59651000	63363000	1854	2560	1755	10933;10934;10935;10936;10937	14890;14891;14892;14893;14894	14894			5	
AFVSMVYSEEGAEDRTFAR	0	Unmodified	2163.9895	0.98951825	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	71.507	62.893	3	6.5942E-19	34619	160513_QHF_FH_JSI10Kac_6	145.62	129.99			1.1147	1.2653	39.868	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79813	0.95449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5569	1.6774	NaN	1	0	Median	56949000	26429000	30521000	0	0	0	39319000	19851000	19468000	0	0	0	17630000	6578100	11052000	1855	2560	1756	10938;10939	14895;14896;14897;14898	14897			4	
AFVSYVQAYAK	1	Unmodified	1245.6394	0.63937381	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.3			2					2	5	3	2	2	2	65.704	58.31	2	1.6833E-31	30892	160513_QHF_FH_JSI9Kac_6	193.38	136.33			0.95916	0.90336	31.741	9	6	Median	0.9937	0.85505	19.316	3	3	Plateau	0.57231	0.66337	69.313	2	2	Median	0.96942	0.90185	0.23746	2	1	Median	0.81913	0.85548	29.847	2	0	Median	532040000	253260000	278780000	107050000	54480000	52569000	56061000	25464000	30597000	197510000	98987000	98518000	171420000	74326000	97095000	1856	3670	1757	10940;10941;10942;10943;10944;10945;10946;10947;10948	14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909	14905			11	
AFVTDWDK	1	Unmodified	980.46035	0.46034682	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	49.306	48.388	2	0.0045409	41357	160511_QHF_FH_JSI12i_2	68.383	52.751			1.1884	1.2277	2.2502	5	0	Median	1.4204	1.2128	NaN	1	0	Median	0.99389	1.2277	NaN	1	0	Median	1.1884	1.1961	NaN	1	0	Median	1.1696	1.2541	1.7222	2	0	Median	470320000	233180000	237140000	87517000	38641000	48876000	81534000	42493000	39040000	122590000	57515000	65077000	178680000	94531000	84146000	1857	5035	1758	10949;10950;10951;10952;10953	14910;14911;14912;14913	14910			4	
AFVYLSNLLYPVPLIHR	0	Unmodified	2014.1404	0.14040365	411	O60333	KIF1B	Kinesin-like protein KIF1B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	95.467	86.182	3	0.0001971	48725	160513_QHF_FH_JSI9Kac_6	70.197	60.914			1.1081	1.1551	8.2202	3	0	Median	1.4147	1.2295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1081	1.0447	NaN	1	0	Median	1.0977	1.1551	NaN	1	0	Median	892580000	413970000	478600000	253250000	112370000	140880000	0	0	0	400300000	161140000	239150000	239030000	140460000	98569000	1858	411	1759	10954;10955;10956	14914;14915;14916	14915			3	
AFYAELYHIISSNLEK	1	Unmodified	1896.9622	0.96216452	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	3	4	96.278	91.794	2;3	4.1308E-104	44807	160513_QHF_FH_JSI12Kac_6	306.44	276.63			1.0217	0.93228	14.703	15	4	Median	1.0689	1.0115	9.8632	4	1	Linear	0.95183	1.0875	16.249	4	1	Median	0.8801	0.85573	10.36	3	1	Median	1.015	1.0344	13.392	4	1	Median	25500000000	12285000000	13215000000	4341900000	1827700000	2514200000	6761700000	3193700000	3568000000	5205700000	2716500000	2489200000	9190500000	4546800000	4643700000	1859	5391	1760	10957;10958;10959;10960;10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971	14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933	14930			17	
AFYGDTLVTGFAR	0	Unmodified	1416.7038	0.70376498	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6.38		2	2						2		3	1	2	76.61	75.513	2	1.0148E-06	66269	160511_QHF_FH_JSI11i_2	127.42	107.64			1.1222	1.136	13.18	3	1	Median	NaN	NaN	NaN	0	0	Median	0.93452	1.1006	NaN	1	1	Median	1.1222	1.136	NaN	1	0	Median	1.2579	1.4026	NaN	1	0	Median	257430000	131660000	125770000	0	0	0	17181000	8491700	8689300	141830000	72378000	69447000	98421000	50788000	47633000	1860	4852	1761	10972;10973;10974;10975;10976;10977	14934;14935;14936;14937;14938;14939;14940	14937			7	
AFYKGTVPR	1	Acetyl (K)	1079.5764	0.57637963	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	48.065	38.443	2	0.007118	20914	160513_QHF_FH_JSI11Kac_6	68.224	34.427			0.6505	0.66862	64.304	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2616	1.4665	NaN	1	0	Median	0.42714	0.41786	2.7973	2	0	Median	0.97605	1.0489	NaN	1	0	Median	26638000	16895000	9742600	0	0	0	5580400	2481900	3098500	16344000	11829000	4515000	4713700	2584600	2129100	1861	1792	1762	10978;10979;10980;10981	14941;14942;14943;14944	14942	1805		4	
AFYKGVAPLWMR	1	Acetyl (K)	1479.7697	0.76967648	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	85.477	76.096	2	9.888E-16	42149	160513_QHF_FH_JSI11Kac_6	143.03	107.09			0.39714	0.38957	17.752	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36721	0.34361	NaN	1	0	Median	0.4295	0.44167	NaN	1	1	Median	200330000	147780000	52547000	0	0	0	0	0	0	181180000	134350000	46831000	19143000	13427000	5716400	1862	2146	1763	10982;10983;10984	14945;14946;14947	14945	2244		3	
AFYKGVAPLWMR	1	Acetyl (K);Oxidation (M)	1495.7646	0.7645911	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		80.786	71.472	2	5.5436E-07	39227	160513_QHF_FH_JSI11Kac_6	129.38	94.158			0.22855	0.21698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22855	0.21698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17406000	14555000	2850700	0	0	0	0	0	0	17406000	14555000	2850700	0	0	0	1863	2146	1763	10985	14948	14948	2244	1789	1	
AFYKSFSK	2	Acetyl (K)	1018.5124	0.51238239	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		53.057	43.893	2	0.012122	24156	160513_QHF_FH_JSI10Kac_6	71.692	57.689			0.55832	0.59846	113.19	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.3324	NaN	1	0	Median	0.28044	0.2688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152550000	113630000	38923000	0	0	0	27906000	15582000	12324000	124640000	98045000	26599000	0	0	0	1864	1057	1764	10986;10987	14949;14950	14950	887		2	
AFYNNVLGEYEEYITK	1	Unmodified	1951.9204	0.92035928	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	97.155	96.891	2;3	3.7935E-22	85111	160511_QHF_FH_JSI11i_2	209.99	197.63			1.1097	1.165	7.815	7	1	Median	1.5573	1.3126	NaN	1	1	Median	0.95578	1.1537	1.3794	2	0	Median	1.0971	1.1067	7.047	2	0	Median	1.1739	1.275	0.48093	2	0	Median	195200000	91246000	103960000	40057000	14710000	25348000	57242000	31422000	25820000	53813000	23814000	29999000	44089000	21300000	22789000	1865	808	1765	10988;10989;10990;10991;10992;10993;10994;10995	14951;14952;14953;14954;14955;14956;14957;14958;14959;14960	14958			10	
AFYPEEISSMVLTK	1	Unmodified	1613.8011	0.80109577	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.38	8	8	9					5	7	10	8	11	8	90.835	87.491	2;3	5.124E-30	43050	160513_QHF_FH_JSI11Kac_6	161.99	138			1.0544	1.0226	30.105	35	4	Median	1.1212	0.91629	12.461	8	1	Median	0.81749	0.96398	17.8	8	1	Median	1.0761	1.0478	16.256	11	2	Median	1.0289	1.0561	51.815	8	0	Median	21542000000	9129800000	12412000000	2710700000	1200900000	1509800000	3892200000	1936600000	1955600000	4833500000	2260300000	2573300000	10105000000	3732000000	6373000000	1866	954;1416	1766	10996;10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007;11008;11009;11010;11011;11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022;11023;11024;11025;11026;11027;11028;11029;11030;11031;11032	14961;14962;14963;14964;14965;14966;14967;14968;14969;14970;14971;14972;14973;14974;14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993;14994;14995;14996;14997;14998;14999;15000;15001;15002;15003;15004;15005;15006;15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067	14996			106	
AFYPEEISSMVLTK	1	Oxidation (M)	1629.796	0.79601039	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	6.1	4	17	1					10		9	7	8	8	78.7	74.772	2;3	1.1734E-05	37361	160513_QHF_FH_JSI11Kac_5	103.91	79.528			0.84468	0.87167	24.862	28	3	Median	0.94868	0.81623	22.364	7	2	Median	0.6822	0.84066	25.022	7	0	Median	1.0425	1.0371	11.553	8	0	Median	0.78983	0.86414	35.9	6	1	Median	964650000	548960000	415690000	169210000	93796000	75411000	186270000	115630000	70641000	269380000	133910000	135460000	339790000	205620000	134170000	1867	954;1416	1766	11033;11034;11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046;11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058;11059;11060;11061;11062;11063;11064	15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113	15102		527	44	
AFYSDVIAEDLRR	0	Unmodified	1553.7838	0.78380622	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			66.324	65.496	3	0.0056254	58130	160511_QHF_FH_JSI10i_2	37.248	30.202			1.0594	1.3136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0594	1.3136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80355000	39110000	41246000	0	0	0	80355000	39110000	41246000	0	0	0	0	0	0	1868	1841	1767	11065	15114	15114			1	
AFYVNVLNEEQR	0	Unmodified	1480.731	0.73104237	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							2		1		65.23	64.309	2	9.7877E-06	56656	160511_QHF_FH_JSI9i_2	115.78	86.308			1.4169	1.2134	NaN	1	1	Median	1.4169	1.2134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24723000	10042000	14681000	24723000	10042000	14681000	0	0	0	0	0	0	0	0	0	1869	800	1768	11066;11067;11068	15115;15116;15117	15117			3	
AFYVNVLNEEQRK	1	Unmodified	1608.826	0.82600539	800	P04040	CAT	Catalase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		55.545	54.376	2;3	1.2943E-22	44590	160511_QHF_FH_JSI9i_3	141.58	127.84			1.0638	1.0002	34.164	4	2	Median	1.6661	1.373	35.698	2	1	Median	0.80125	0.9379	NaN	1	0	Median	0.85197	0.80271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	511990000	245940000	266050000	206140000	84299000	121840000	274760000	145120000	129640000	31092000	16517000	14575000	0	0	0	1870	800	1769	11069;11070;11071;11072	15118;15119;15120;15121;15122;15123	15121			6	
AFYVPAQYVK	1	Unmodified	1184.623	0.62299547	3431	Q8IWW6	ARHGAP12	Rho GTPase-activating protein 12	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.3	59.986	2	0.01894	51518	160511_QHF_FH_JSI12i_2	64.836	35.027			0.50661	0.548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50661	0.548	NaN	1	0	Median	24724000	14921000	9802400	0	0	0	0	0	0	0	0	0	24724000	14921000	9802400	1871	3431	1770	11073	15124	15124			0	
AGAAAESGR	0	Acetyl (Protein N-term)	830.38824	0.38824451	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	11	0				2								1	1	10.053	2.5586	2	0.0035666	3004	160513_QHF_FH_JSI11Kac_1	73.26	59.103			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1872	4052	1771	11074;11075	15125;15126	15126			2	
AGAAEKGVPLYR	1	Acetyl (K)	1272.6826	0.68263561	1044	P13929	ENO3	Beta-enolase	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	51.8	41.328	2	0.042675	23682	160513_QHF_FH_JSI12Kac_4	50.108	38.26			0.0289	0.030742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0289	0.030742	NaN	1	1	Median	2465800	2421100	44649	0	0	0	0	0	0	0	0	0	2465800	2421100	44649	1873	1044	1772	11076	15127	15127			1	
AGAAFFNEVR	0	Unmodified	1080.5352	0.53524309	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	48.443	47.539	2	1.7078E-05	40601	160511_QHF_FH_JSI12i_3	111.06	92.285			1.2572	1.356	7.9525	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1226	1.2818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4079	1.4344	NaN	1	1	Median	277010000	105470000	171540000	0	0	0	36452000	19726000	16727000	0	0	0	240560000	85745000	154820000	1874	464	1773	11077;11078;11079	15128;15129;15130	15130			3	
AGAAGGPEEEAEK	1	Unmodified	1214.5415	0.54151026	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	10.553	8.7808	2	2.0426E-10	7234	160511_QHF_FH_JSI10i_1	149.23	127.15			0.95422	0.93189	15.673	5	1	Median	1.2562	1.024	NaN	1	0	Median	0.80531	0.93189	NaN	1	0	Median	1.0057	0.97577	7.9388	2	1	Median	0.68578	0.70138	NaN	1	0	Median	355580000	185860000	169720000	81351000	37325000	44026000	99820000	53741000	46079000	88347000	34323000	54025000	86063000	60477000	25586000	1875	3793	1774	11080;11081;11082;11083;11084;11085	15131;15132;15133;15134;15135;15136;15137	15136			7	
AGAAGGPEEEAEKPVK	2	Unmodified	1538.7577	0.75765105	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	3	3	16.809	15.573	3	6.5305E-08	13262	160511_QHF_FH_JSI12i_1	138.39	134.29			1.0149	1.0644	25.154	10	1	Median	1.3843	1.1581	10.26	2	0	Median	0.89476	1.0806	5.5913	2	0	Median	1.0811	1.0519	48.72	3	1	Median	0.87277	0.93776	12.508	3	0	Plateau	1955900000	890220000	1065700000	584890000	199370000	385530000	471800000	254930000	216870000	453030000	209310000	243710000	446200000	226610000	219590000	1876	3793	1775	11086;11087;11088;11089;11090;11091;11092;11093;11094;11095	15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153	15142			16	
AGAAGGPEEEAEKPVK	2	Acetyl (K)	1580.7682	0.76821573	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.373					5	1					2	2	2	36.533	27.87	2;3	1.1923E-06	12898	160513_QHF_FH_JSI10Kac_2	110.86	76.325			0.92303	0.99651	21.029	5	0	Median	NaN	NaN	NaN	0	0	Median	0.99964	1.1625	11.966	2	0	Median	1.0388	0.99651	NaN	1	0	Median	0.77478	0.82646	21.431	2	0	Median	17789000	9981400	7807200	0	0	0	7548900	4369000	3179900	1946800	1024300	922470	8292900	4588100	3704800	1877	3793	1775	11096;11097;11098;11099;11100;11101	15154;15155;15156;15157;15158;15159;15160;15161	15158	2937		8	
AGAANSQLSTSQPSLR	0	Unmodified	1586.8012	0.8012472	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		29.658	29.439	2	3.5512E-05	26208	160511_QHF_FH_JSI10i_1	83.358	65.884			0.61201	0.58446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61201	0.58446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25483000	15586000	9896700	0	0	0	0	0	0	25483000	15586000	9896700	0	0	0	1878	4002	1776	11102;11103	15162;15163	15163			2	
AGAAPVAPEK	1	Unmodified	909.49198	0.4919813	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	7	6	2					2					1	2	1	15.382	11.685	2	0.0036249	10090	160511_QHF_FH_JSI10i_1	56.258	43.27			0.63018	0.70607	15.504	4	0	Median	NaN	NaN	NaN	0	0	Median	0.64559	0.74774	NaN	1	0	Median	0.74022	0.72064	25.518	2	0	Median	0.61513	0.66673	NaN	1	0	Median	356820000	227040000	129780000	0	0	0	167870000	104740000	63129000	187100000	121250000	65852000	1857200	1056500	800790	1879	3915	1777	11104;11105;11106;11107	15164;15165;15166	15166			3	
AGAAPYVQAFDSLLAGPVAEYLK	1	Unmodified	2350.2209	0.2208984	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	2	3	1	102.76	102.68	2;3	2.6339E-47	90453	160511_QHF_FH_JSI11i_2	257.35	232.39			0.97426	0.99898	11.502	7	0	Median	1.4064	1.1947	NaN	1	0	Median	0.82323	1.0176	7.6532	2	0	Median	1.0329	1.1524	9.6402	3	0	Plateau	0.76837	0.85938	NaN	1	0	Median	2376400000	1158700000	1217700000	309720000	126090000	183630000	493720000	276030000	217690000	1063700000	499490000	564170000	509340000	257130000	252210000	1880	2169	1778	11108;11109;11110;11111;11112;11113;11114	15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180	15176			14	
AGAATQASLESAPR	0	Acetyl (Protein N-term)	1370.679	0.6790068	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.355	41.701	2	1.2604E-12	37472	160511_QHF_FH_JSI10i_1	202.03	190.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1881	4522	1779	11115;11116;11117;11118	15181;15182;15183;15184	15183			4	
AGADEERAETAR	0	Unmodified	1274.5851	0.58510641	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.35	4.31	9	8	3				2	1		4	5	6	8	6.087	4.6519	2;3	6.0129E-23	3648	160511_QHF_FH_JSI12i_1	142.1	122.96			0.97187	1.1075	17.599	23	2	Median	1.4525	1.3004	5.1189	4	0	Linear	0.95375	1.1332	4.342	5	0	Median	1.2209	1.1821	10.644	6	0	Median	0.80447	0.85002	6.5757	8	2	Median	8826400000	4252800000	4573600000	1680600000	619640000	1061000000	2187900000	1132900000	1055000000	2194600000	999630000	1195000000	2763300000	1500600000	1262700000	1882	2090	1780	11119;11120;11121;11122;11123;11124;11125;11126;11127;11128;11129;11130;11131;11132;11133;11134;11135;11136;11137;11138;11139;11140;11141	15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195;15196;15197;15198;15199;15200;15201;15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220	15193			36	
AGAEGAAGR	0	Acetyl (Protein N-term)	800.37768	0.37767982	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		9.4549	1.9535	2	0.030212	2795	160513_QHF_FH_JSI11Kac_1	46.994	42.006			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1883	3564	1781	11142	15221	15221			1	
AGAEVVK	1	Unmodified	672.38064	0.38063993	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By matching		By MS/MS	1.75	0.829	2	1	1								2		2	7.824	7.5807	2	0.012734	5475	160511_QHF_FH_JSI12i_1	68.915	27.413			0.77608	0.93895	23.355	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77608	0.93895	8.7419	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84118	0.88025	38.964	2	0	Median	1691200000	972040000	719130000	0	0	0	866420000	486390000	380030000	0	0	0	824750000	485650000	339100000	1884	1823	1782	11143;11144;11145;11146	15222;15223	15222			2	
AGAFDQLK	1	Unmodified	848.43922	0.43921744	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		29.751	29.146	2	0.0099826	25936	160511_QHF_FH_JSI10i_1	55.531	31.558			0.74907	0.82108	16.315	3	0	Plateau	1.3287	1.0767	NaN	1	0	Median	0.70498	0.82108	NaN	1	0	Median	0.82098	0.80327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	221080000	112370000	108710000	48938000	23142000	25796000	87278000	49288000	37990000	84867000	39944000	44923000	0	0	0	1885	1929	1783	11147;11148;11149	15224;15225;15226;15227;15228	15227			5	
AGAGAPELLR	0	Unmodified	953.52943	0.52942943	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		33.446	33.047	2	0.011796	28142	160511_QHF_FH_JSI11i_2	46.129	20.392			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1886	2157	1784	11150	15229	15229			1	
AGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGK	1	Unmodified	2963.5101	0.51009756	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			82.082	80.784	3	4.1049E-11	66451	160511_QHF_FH_JSI9i_3	59.971	57.595			1.0564	1.0363	8.2953	2	0	Median	1.3342	1.0989	NaN	1	0	Median	0.83644	0.97724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46619000	21153000	25466000	21721000	8333600	13387000	24898000	12819000	12078000	0	0	0	0	0	0	1887	4878	1785	11151;11152;11153	15230;15231;15232;15233;15234;15235;15236	15235			7	
AGAGDFMR	0	Unmodified	823.36467	0.36467229	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	23.223	22.566	2	0.0046978	18724	160511_QHF_FH_JSI11i_2	67.903	44.883			0.85829	0.96377	17.378	7	0	Median	1.2278	1.0525	NaN	1	0	Median	0.98102	1.1814	16.533	2	0	Median	0.93776	0.91101	7.9622	2	0	Median	0.76775	0.82429	4.8518	2	0	Median	763420000	394340000	369090000	36967000	14111000	22856000	224140000	116110000	108030000	288890000	149240000	139650000	213430000	114870000	98557000	1888	3973	1786	11154;11155;11156;11157;11158;11159;11160	15237;15238	15238			2	
AGAGLAASR	0	Unmodified	772.41915	0.4191507	3688	Q8TB22	SPATA20	Spermatogenesis-associated protein 20	yes	yes	0	0	0	0	By MS/MS			By MS/MS	7	6	1					1				1			1	29.279	20.071	2	0.0032167	6822	160513_QHF_FH_JSI9Kac_3	80.462	3.6157			0.11157	0.1173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11157	0.1173	NaN	1	1	Median	90656000	83528000	7128000	45046000	45046000	0	0	0	0	0	0	0	45610000	38482000	7128000	1889	3688	1787	11161;11162	15239;15240	15240			2	
AGAGLGDGERK	1	Unmodified	1029.5203	0.52032131	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.81		5	4					4		2	3	5	3	6.6668	3.6322	2;3	1.9536E-10	3905	160511_QHF_FH_JSI11i_3	140.45	67.407			1.0785	1.0033	25.466	13	0	Median	1.6637	1.4275	4.125	2	0	Median	0.7863	0.94846	9.3436	3	0	Plateau	1.151	1.1219	10.61	5	0	Median	0.71412	0.70797	10.581	3	0	Plateau	1454400000	695850000	758550000	215590000	84294000	131300000	211120000	124600000	86515000	725860000	344100000	381760000	301830000	142860000	158980000	1890	4521	1788	11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174;11175	15241;15242;15243;15244;15245;15246;15247;15248;15249;15250;15251;15252;15253	15241			13	
AGAGMITQHSSNASPINR	0	Unmodified	1810.8744	0.87442892	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			28.599	27.246	2;3	4.4868E-12	22609	160511_QHF_FH_JSI10i_3	147.07	137.54			0.97717	0.96322	7.6225	2	0	Median	1.2204	1.0166	NaN	1	0	Median	0.78242	0.91268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110880000	52815000	58065000	73190000	33811000	39379000	37689000	19003000	18685000	0	0	0	0	0	0	1891	5066	1789	11176;11177;11178;11179	15254;15255;15256;15257;15258	15254			5	
AGAGMITQHSSNASPINR	0	Oxidation (M)	1826.8693	0.86934354	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				20.735	19.497	3	0.015902	15703	160511_QHF_FH_JSI9i_3	32.926	22.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1892	5066	1789	11180	15259	15259		2578	1	
AGAGSAAVSGAGTPVAGPTGR	0	Acetyl (Protein N-term)	1752.8755	0.87547477	672	O95295	SNAPIN	SNARE-associated protein Snapin	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.904	45.41	2	1.0828E-32	41138	160511_QHF_FH_JSI12i_1	210.14	163.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1893	672	1790	11181;11182;11183	15260;15261;15262;15263	15262			4	
AGAGSATLSMAYAGAR	0	Oxidation (M)	1469.6933	0.69327665	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.97	6.22	3	5	5			4	4	4	4	8	8	6	7	36.743	31.063	2	1.6229E-103	19168	160513_QHF_FH_JSI11Kac_4	249.2	223.26			0.96302	1.0186	28.672	25	6	Median	1.5987	1.3605	22.043	7	2	Median	0.85433	1.0186	11.895	7	1	Median	1.0353	0.90782	13.67	5	0	Linear	0.7127	0.77344	14.736	6	3	Median	1368700000	721800000	646890000	331180000	133960000	197220000	363710000	207590000	156120000	262640000	125480000	137170000	411160000	254780000	156380000	1894	1504	1791	11184;11185;11186;11187;11188;11189;11190;11191;11192;11193;11194;11195;11196;11197;11198;11199;11200;11201;11202;11203;11204;11205;11206;11207;11208;11209;11210;11211;11212	15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274;15275;15276;15277;15278;15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303	15279		1181	40	
AGAGSATLSMAYAGAR	0	Unmodified	1453.6984	0.69836203	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.53	4	6	7				2	7	5	7	9	8	7	48.966	43.868	2;3	1.2828E-139	38440	160511_QHF_FH_JSI9i_2	268.98	234.26			0.98766	0.9981	21.451	30	5	Median	2.0106	1.6523	14.15	6	0	Linear	0.83197	0.99372	7.9142	9	1	Median	1.0085	0.99707	9.2357	8	1	Median	0.66646	0.73483	13.06	7	3	Median	6481400000	3218300000	3263100000	1041800000	379650000	662140000	2008400000	1053400000	954960000	1665800000	860800000	805030000	1765400000	924430000	840960000	1895	1504	1791	11213;11214;11215;11216;11217;11218;11219;11220;11221;11222;11223;11224;11225;11226;11227;11228;11229;11230;11231;11232;11233;11234;11235;11236;11237;11238;11239;11240;11241;11242;11243	15304;15305;15306;15307;15308;15309;15310;15311;15312;15313;15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335;15336;15337;15338;15339;15340;15341;15342;15343;15344;15345;15346;15347	15325			42	
AGAGVPGEQPVDLNLPLEAPPISK	1	Unmodified	2368.2638	0.26382585	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		94.402	94.24	3	0.02002	85742	160511_QHF_FH_JSI11i_1	29.198	25.394			0.5247	0.55622	22.763	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55895	0.65336	NaN	1	1	Median	0.49256	0.47353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34805000	27673000	7131800	0	0	0	14700000	11864000	2836200	20104000	15809000	4295600	0	0	0	1896	3405	1792	11244;11245	15348;15349	15348			2	
AGAHLQGGAK	1	Unmodified	908.48281	0.48281359	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.02	6.57	7	10	8				5	8	8	9	12	12	13	6.534	2.3933	2;3	5.8271E-15	2418	160511_QHF_FH_JSI11i_2	168.23	71.167			0.8092	0.91067	43.616	44	3	Median	1.4641	1.3492	23.032	8	0	Median	0.66441	0.63549	21.712	12	0	Linear	1.1379	1.1045	19.839	12	2	Median	0.67615	0.71451	48.43	12	1	Median	433310000000	195810000000	237500000000	69634000000	24866000000	44769000000	120720000000	52616000000	68107000000	123630000000	54360000000	69273000000	119320000000	63971000000	55348000000	1897	812	1793	11246;11247;11248;11249;11250;11251;11252;11253;11254;11255;11256;11257;11258;11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278;11279;11280;11281;11282;11283;11284;11285;11286;11287;11288;11289;11290;11291	15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360;15361;15362;15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374;15375;15376;15377;15378;15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389;15390;15391;15392;15393;15394;15395;15396;15397;15398;15399;15400;15401;15402;15403;15404;15405;15406;15407;15408;15409;15410;15411;15412;15413;15414;15415;15416;15417;15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429	15394			80	
AGAHLQGGAKR	1	Acetyl (K)	1106.5945	0.59448931	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	8.99	1.4842	2;3	0.00034692	3271	160513_QHF_FH_JSI10Kac_6	93.096	57.8			0.52646	0.57493	107.04	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2047	1.4434	12.857	2	0	Median	0.25008	0.25081	NaN	1	0	Median	0.19796	0.20756	NaN	1	0	Median	47546000	27539000	20006000	0	0	0	32609000	15527000	17082000	7714500	6112400	1602100	7222400	5900400	1322000	1898	812	1794	11292;11293;11294;11295	15430;15431;15432;15433	15433	445		4	
AGAIAPCEVTVPAQNTGLGPEK	1	Unmodified	2179.0943	0.094317676	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	62.292	61.657	2;3	8.7554E-29	56323	160511_QHF_FH_JSI12i_1	223.7	210.56			0.92302	0.98497	16.005	8	0	Median	1.5013	1.2412	4.169	2	0	Median	0.89342	1.0584	5.5625	2	0	Median	0.87307	0.853	10.439	2	0	Median	0.90267	0.92527	4.2392	2	0	Median	3076100000	1528600000	1547500000	463500000	171000000	292500000	914230000	470980000	443240000	1058400000	565670000	492710000	640020000	320990000	319030000	1899	837	1795	11296;11297;11298;11299;11300;11301;11302;11303;11304	15434;15435;15436;15437;15438;15439;15440;15441;15442;15443;15444;15445;15446;15447;15448;15449;15450;15451;15452;15453	15442			20	
AGAIFVPIHLVK	1	Unmodified	1263.7703	0.77032841	3182	Q6ZRI6	C15orf39	Uncharacterized protein C15orf39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.892	74.103	3	6.7953E-05	64031	160511_QHF_FH_JSI12i_3	74.944	73.693			0.59135	0.63786	38.221	4	0	Linear	1.8576	1.5733	NaN	1	0	Median	0.95513	1.1048	NaN	1	0	Median	0.91778	0.8565	NaN	1	0	Median	0.61449	0.6397	NaN	1	0	Median	126140000	71109000	55027000	11546000	4416600	7129000	19644000	10056000	9587800	35580000	19809000	15771000	59366000	36827000	22539000	1900	3182	1796	11305;11306;11307;11308	15454;15455;15456;15457	15457			4	
AGAIIENMSTK	1	Unmodified	1133.5751	0.575059	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		33.76	32.963	2	3.973E-06	27998	160511_QHF_FH_JSI11i_2	132.88	90.588			1.2089	1.1495	50.729	3	2	Median	1.3526	1.1495	NaN	1	1	Median	0.39544	0.48966	NaN	1	1	Median	1.2089	1.2066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	270590000	140060000	130530000	89858000	32287000	57571000	80895000	52114000	28781000	99836000	55663000	44173000	0	0	0	1901	2958	1797	11309;11310;11311;11312	15458;15459;15460;15461	15460			4	
AGAISASGPELQGAGHSK	1	Unmodified	1636.8169	0.81689726	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.52	3	8	5					5		4	5	6	6	27.729	25.345	2;3	9.1389E-61	20990	160511_QHF_FH_JSI12i_3	266.97	254.01			0.85869	0.97963	19.12	18	6	Median	1.3075	1.1244	19.69	3	1	Median	0.79829	0.97221	9.3517	4	2	Median	1.162	1.1907	10.333	5	1	Median	0.69608	0.75654	13.06	6	2	Plateau	2980200000	1482900000	1497300000	382660000	154230000	228430000	396520000	223700000	172820000	1059600000	462070000	597520000	1141400000	642880000	498510000	1902	2286	1798	11313;11314;11315;11316;11317;11318;11319;11320;11321;11322;11323;11324;11325;11326;11327;11328;11329;11330;11331;11332;11333	15462;15463;15464;15465;15466;15467;15468;15469;15470;15471;15472;15473;15474;15475;15476;15477;15478;15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498	15498			37	
AGAKPDQIGIITPYEGQR	1	Unmodified	1913.0007	0.0006752871	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.03		1	6					1		1	1	3	3	53.757	51.76	2;3	1.269E-11	44301	160511_QHF_FH_JSI12i_3	139.11	131.42			0.846	0.94302	29.081	7	4	Median	1.5167	1.2944	NaN	1	1	Median	0.82072	0.94302	NaN	1	0	Median	0.99747	0.96951	10.635	3	1	Median	0.57697	0.58809	0.34953	2	2	Median	1250700000	687140000	563570000	174180000	70088000	104090000	38526000	20315000	18211000	553170000	298410000	254750000	484830000	298320000	186510000	1903	3904	1799	11334;11335;11336;11337;11338;11339;11340;11341	15499;15500;15501;15502;15503;15504;15505;15506;15507	15505			9	
AGALAVK	1	Unmodified	628.39081	0.39081069	2339	Q13009	TIAM1	T-lymphoma invasion and metastasis-inducing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		2	1	10.971	10.558	2	0.050833	8228	160511_QHF_FH_JSI11i_1	42.719	10.605			1.079	1.0429	31.513	5	0	Median	0.93345	0.77987	52.014	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94969	0.94391	14.106	2	0	Median	1.0956	1.1541	NaN	1	0	Median	501560000	229520000	272040000	138710000	55295000	83417000	0	0	0	222410000	105000000	117410000	140440000	69228000	71210000	1904	2339	1800	11342;11343;11344;11345;11346	15508	15508			1	
AGALHAQVER	0	Unmodified	1050.557	0.55704117	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							3	2	2		10.345	9.8804	2;3	7.0163E-08	7430	160511_QHF_FH_JSI9i_3	123.86	90.063			1.2857	1.2052	11.739	7	1	Median	1.5976	1.2809	6.0865	3	1	Median	0.84707	1.0069	4.5809	2	0	Median	1.2506	1.1881	2.0155	2	0	Median	NaN	NaN	NaN	0	0	Median	941090000	464270000	476820000	304970000	127840000	177130000	418520000	238260000	180260000	217600000	98170000	119430000	0	0	0	1905	4361	1801	11347;11348;11349;11350;11351;11352;11353	15509;15510;15511;15512;15513;15514;15515;15516;15517	15514			9	
AGALQCSPSDAYTK	1	Unmodified	1467.6664	0.6663932	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	28.445	28.083	2	1.2095E-12	24889	160511_QHF_FH_JSI10i_1	117.09	102.4			0.94642	1.0109	25.557	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2838	1.5002	NaN	1	1	Median	0.9505	0.92958	NaN	1	0	Median	0.94642	1.0109	NaN	1	0	Median	174700000	84686000	90018000	0	0	0	57361000	20899000	36462000	56667000	29465000	27202000	60676000	34322000	26354000	1906	5616	1802	11354;11355;11356;11357	15518;15519;15520;15521;15522	15522			5	
AGAQPGVHALQLEPPTVVETLRR	0	Acetyl (Protein N-term)	2480.35	0.34995551	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	1	0	1	By MS/MS				2	0		1								1				81.988	81.346	3	0.0055049	71733	160511_QHF_FH_JSI9i_2	34.914	20.753			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1907	2180	1803	11358	15523	15523			1	
AGASISTLAGLSLK	1	Unmodified	1287.7398	0.73981614	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.325	73.531	2	1.3219E-14	63770	160511_QHF_FH_JSI12i_3	158.3	122.85			1.0924	1.1511	30.309	4	1	Median	1.9689	1.6678	NaN	1	1	Median	0.95078	1.0992	NaN	1	0	Median	1.2551	1.2054	NaN	1	0	Median	0.76905	0.79839	NaN	1	0	Median	201560000	109980000	91579000	11665000	3599500	8065700	19650000	10575000	9074800	55002000	28417000	26586000	115240000	67385000	47853000	1908	5348	1804	11359;11360;11361;11362	15524;15525;15526;15527;15528;15529;15530;15531	15530			8	
AGASLVQLYTALTFWGPPVVGK	1	Unmodified	2274.2412	0.24123991	2184	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		99.201	89.784	3	5.9912E-09	51481	160513_QHF_FH_JSI11Kac_6	88.57	66.767			1.4049	1.2919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4049	1.2919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59569000	34131000	25438000	0	0	0	0	0	0	59569000	34131000	25438000	0	0	0	1909	2184	1805	11363	15532	15532			0	
AGATLDLLVENMGR	0	Unmodified	1458.7501	0.75006325	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	82.75	82.467	2	3.2171E-21	71592	160511_QHF_FH_JSI12i_3	170.62	134.67			0.75749	0.94328	21.951	3	1	Median	NaN	NaN	NaN	0	0	Median	0.75749	0.94328	NaN	1	0	Median	1.2554	1.1627	NaN	1	1	Median	0.74468	0.74968	NaN	1	0	Median	164510000	79460000	85054000	0	0	0	30000000	15983000	14017000	53510000	20775000	32735000	81004000	42702000	38302000	1910	1094	1806	11364;11365;11366	15533;15534;15535;15536	15536			3	
AGATSEGVLANFFNSLLSK	1	Unmodified	1924.9894	0.9894419	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	102.59	102.54	2;3	4.7888E-237	91709	160511_QHF_FH_JSI11i_3	343.96	318.62			0.93188	0.88594	30.713	6	2	Median	0.91299	0.76525	NaN	1	0	Median	0.95117	1.1336	NaN	1	0	Median	1.1377	1.0818	7.5368	2	0	Median	0.59328	0.59777	9.0146	2	2	Median	371780000	210300000	161470000	14984000	8415100	6568500	55085000	29773000	25312000	164200000	79900000	84300000	137510000	92216000	45291000	1911	5725	1807	11367;11368;11369;11370;11371;11372	15537;15538;15539;15540;15541;15542;15543;15544;15545	15539			9	
AGAVAEEVLAAIR	0	Unmodified	1268.7089	0.70885036	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.478	81.252	2	0.0002422	70588	160511_QHF_FH_JSI12i_3	102.52	80.531			0.92782	0.97814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92782	0.97814	NaN	1	1	Median	47071000	25775000	21297000	0	0	0	0	0	0	0	0	0	47071000	25775000	21297000	1912	894	1808	11373	15546	15546			1	
AGAVAER	0	Unmodified	672.35549	0.35548781	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								4	4	2	3	4.5186	4.1675	2	0.011105	3418	160511_QHF_FH_JSI9i_1	71.949	22.359			0.92514	0.99776	16.876	13	1	Median	1.0937	0.91371	18.003	4	0	Median	0.89973	1.0746	12.408	4	0	Median	0.93463	0.92375	10.9	2	0	Median	0.91987	0.97966	18.08	3	1	Median	5865500000	2958600000	2906900000	1011700000	462270000	549420000	2144500000	1107400000	1037100000	985250000	493250000	492010000	1724100000	895730000	828380000	1913	860	1809	11374;11375;11376;11377;11378;11379;11380;11381;11382;11383;11384;11385;11386	15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561	15556			15	
AGAVASQTK	1	Unmodified	831.44503	0.4450311	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	4.9803	2.3302	2	0.00059589	2554	160511_QHF_FH_JSI10i_1	77.732	36.23			1.0568	1.1506	20.398	6	0	Median	1.5386	1.2706	NaN	1	0	Median	0.88184	1.054	6.4487	2	0	Median	1.2317	1.2047	0.54496	2	0	Median	0.68659	0.73043	NaN	1	0	Median	2400300000	1249300000	1150900000	320320000	134610000	185710000	687540000	357520000	330020000	697980000	320030000	377950000	694430000	437170000	257260000	1914	2409	1810	11387;11388;11389;11390;11391;11392	15562;15563;15564;15565;15566;15567;15568	15566			7	
AGAVEKGVPLYR	1	Acetyl (K)	1300.7139	0.71393574	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	58.651	47.897	2	3.0831E-62	26436	160513_QHF_FH_JSI10Kac_4	229.17	186.57			0.44231	0.46221	172.39	6	4	Median	NaN	NaN	NaN	0	0	Median	0.75574	0.90931	7.1725	2	0	Median	0.060437	0.059845	239.11	2	2	Median	0.23916	0.26061	131.03	2	2	Median	387380000	330820000	56564000	0	0	0	86625000	51456000	35169000	203080000	197450000	5629600	97675000	81909000	15765000	1915	854	1811	11393;11394;11395;11396;11397;11398	15569;15570;15571;15572;15573;15574	15570	517		6	
AGAVEQLR	0	Unmodified	842.46102	0.46101552	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	14.436	13.831	2	0.0226	11011	160511_QHF_FH_JSI12i_2	43.808	8.5125			0.94208	1.0615	29.704	4	0	Median	1.4584	1.2739	NaN	1	0	Median	0.81914	1.0149	NaN	1	0	Median	1.0835	1.1102	NaN	1	0	Median	0.57424	0.64183	NaN	1	0	Median	473050000	242930000	230120000	98564000	41319000	57244000	78339000	42903000	35435000	187870000	90774000	97097000	108270000	67932000	40340000	1916	899	1812	11399;11400;11401;11402	15575	15575			1	
AGAVSALAK	1	Unmodified	786.45995	0.45995289	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.34		4	1				2			1	2	2	2	19.72	16.828	2	0.0011005	14255	160511_QHF_FH_JSI9i_2	70.525	37.915			1.0248	1.0234	24.059	7	1	Median	1.3334	1.1335	NaN	1	0	Median	0.94094	1.1361	29.748	2	1	Median	1.0331	1.0268	0.46217	2	0	Median	0.67955	0.72511	9.3496	2	0	Median	884130000	454020000	430110000	138960000	57230000	81728000	121590000	60809000	60784000	213470000	91161000	122310000	410100000	244820000	165280000	1917	5708	1813	11403;11404;11405;11406;11407;11408;11409	15576;15577;15578;15579;15580;15581	15579			6	
AGAYDFPSPEWDTVTPEAK	1	Unmodified	2079.9426	0.94255129	2439;2440	Q13555;Q13554;Q9UQM7;Q13557	CAMK2G;CAMK2B;CAMK2A;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	79.486	79.014	2;3	1.1652E-13	71920	160511_QHF_FH_JSI11i_1	151.44	143.53			1.3598	1.298	18.985	8	1	Median	1.4965	1.2471	9.717	2	1	Median	1.2696	1.4354	17.185	2	0	Median	1.1747	1.1355	21.866	2	0	Median	1.0932	1.149	30.915	2	0	Median	262990000	119200000	143790000	49460000	20729000	28731000	61610000	27617000	33994000	77856000	33307000	44549000	74060000	37548000	36512000	1918	2439;2440	1814	11410;11411;11412;11413;11414;11415;11416;11417	15582;15583;15584;15585;15586;15587;15588;15589;15590;15591	15583			10	
AGCAVTSLLASELTK	1	Unmodified	1519.7916	0.79159371	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	82.94	82.788	2;3	8.3942E-05	71842	160511_QHF_FH_JSI12i_3	134.99	120.02			0.86332	0.82418	36.558	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86066	0.77937	NaN	1	0	Median	0.86599	0.87157	43.01	3	2	Median	126110000	62718000	63389000	0	0	0	0	0	0	39676000	19614000	20061000	86430000	43103000	43327000	1919	432	1815	11418;11419;11420;11421	15592;15593;15594;15595;15596;15597	15594			6	
AGCSGLGHPIQLDPNQK	1	Unmodified	1790.8734	0.87336628	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.183	39.987	3	0.0038909	34130	160511_QHF_FH_JSI12i_3	58.98	48.641			1.0534	1.0753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0534	1.0753	NaN	1	0	Median	46439000	18769000	27670000	0	0	0	0	0	0	0	0	0	46439000	18769000	27670000	1920	5734	1816	11422	15598	15598			0	
AGDDYEVLELDDVPK	1	Unmodified	1676.7781	0.77811172	306	O43164	PJA2	E3 ubiquitin-protein ligase Praja-2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			73.263	73.068	2	1.0634E-07	66238	160511_QHF_FH_JSI10i_1	96.103	78.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1921	306	1817	11423	15599	15599			1	
AGDEFVEK	1	Unmodified	893.41306	0.41306227	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	18.831	17.018	2	0.0046996	14706	160511_QHF_FH_JSI12i_1	67.897	53.122			0.71188	0.85999	28.293	5	0	Median	1.5221	1.241	NaN	1	0	Median	0.71188	0.85999	NaN	1	0	Median	1.0977	1.0623	NaN	1	0	Median	0.61525	0.66864	12.433	2	0	Median	2502300000	1253900000	1248500000	615030000	240520000	374510000	653360000	344110000	309250000	545640000	231390000	314250000	688300000	437830000	250470000	1922	2770	1818	11424;11425;11426;11427;11428	15600;15601;15602;15603;15604;15605	15601			6	
AGDELTK	1	Unmodified	732.36538	0.3653838	5435	Q9UNF0;Q9BY11	PACSIN2;PACSIN1	Protein kinase C and casein kinase substrate in neurons protein 2;Protein kinase C and casein kinase substrate in neurons protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	7.6241	7.2869	2	0.032748	4746	160511_QHF_FH_JSI9i_1	50.966	50.966			0.80564	0.83627	15.38	4	0	Median	1.0698	0.88343	NaN	1	0	Median	0.65983	0.79163	NaN	1	0	Median	0.70142	0.68348	NaN	1	0	Median	0.92534	0.97868	NaN	1	0	Median	1789200000	993340000	795900000	480140000	258150000	221990000	595690000	322690000	273010000	90250000	59232000	31018000	623170000	353280000	269890000	1923	5435	1819	11429;11430;11431;11432	15606;15607	15607			2	
AGDITELK	1	Unmodified	845.44945	0.44944778	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.405	23.257	2	0.01054	20396	160511_QHF_FH_JSI11i_1	63.565	10.849			1.0815	1.0627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0815	1.0627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94854000	49971000	44883000	0	0	0	0	0	0	94854000	49971000	44883000	0	0	0	1924	4069	1820	11433	15608	15608			1	
AGDKPHMQTYEVDLNK	2	Unmodified	1844.8727	0.87269758	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							1	2	5	3	35.207	34.843	2;3;4	7.6069E-31	30045	160511_QHF_FH_JSI11i_3	194.58	175.98			1.02	1.1238	39.487	9	3	Median	1.7822	1.5101	NaN	1	0	Median	0.84193	1.0491	9.727	2	1	Median	1.4223	1.3308	21.077	4	2	Median	0.55963	0.568	0.68791	2	0	Median	1901000000	1004900000	896110000	67024000	28056000	38968000	217560000	117160000	100390000	1067900000	504140000	563810000	548490000	355550000	192940000	1925	1196	1821	11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444	15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620	15609			11	
AGDKPHMQTYEVDLNK	2	Oxidation (M)	1860.8676	0.8676122	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	1	1			By matching	By MS/MS	3	0			3									1	2	24.143	24.131	3	7.4413E-05	29269	160511_QHF_FH_JSI12i_3	73.296	64.906			0.97225	0.94075	28.145	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.212	1.1479	NaN	1	0	Median	0.77994	0.77098	NaN	1	0	Median	69742000	44209000	25534000	0	0	0	0	0	0	23856000	11317000	12538000	45887000	32891000	12996000	1926	1196	1821	11445;11446;11447	15621;15622;15623	15623		822	3	
AGDKTLTPR	1	Acetyl (K)	999.53491	0.53490874	1576	P46013	MKI67	Antigen KI-67	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	12.3	0.471					2	1					1	1	1	7.2448	0.03162	2	0.0085499	2697	160513_QHF_FH_JSI12Kac_3	64.265	19.915			0.75123	0.73056	44.755	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0121	1.2076	NaN	1	0	Median	0.75123	0.73056	NaN	1	0	Median	0.46648	0.49456	NaN	1	0	Median	17107000	10157000	6949500	0	0	0	5817200	2852800	2964500	2409400	1268400	1141000	8880300	6036300	2844000	1927	1576	1822	11448;11449;11450	15624	15624	1588		1	
AGDLLEDSPK	1	Unmodified	1043.5135	0.5135046	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	34.457	30.323	2	2.5173E-07	26372	160511_QHF_FH_JSI9i_1	114.5	75.474			0.84843	1.0158	25.851	7	0	Median	1.7251	1.4157	NaN	1	0	Median	0.82556	0.97702	5.4984	2	0	Median	1.1538	1.117	12.904	2	0	Median	0.6712	0.70797	1.9486	2	0	Median	2122400000	996910000	1125500000	457090000	145700000	311380000	595020000	322450000	272570000	553330000	236230000	317100000	516970000	292520000	224450000	1928	1758	1823	11451;11452;11453;11454;11455;11456;11457	15625;15626;15627;15628;15629;15630;15631;15632;15633;15634	15633			10	
AGDLRDTGIFLDLMHLK	1	Unmodified	1914.0033	0.003317824	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	100.74	100.68	3;4	9.1208E-06	87250	160511_QHF_FH_JSI12i_3	83.968	66.268			1.5902	1.5617	71.38	8	2	Median	1.9998	1.7014	0.07603	2	1	Median	1.4293	1.6921	23.697	2	0	Median	2.9769	2.7696	93.067	2	1	Median	0.56681	0.57599	6.2682	2	0	Median	1137300000	452100000	685200000	45576000	14224000	31352000	147260000	59864000	87400000	459590000	74461000	385130000	484870000	303550000	181320000	1929	1023	1824	11458;11459;11460;11461;11462;11463;11464;11465	15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647	15645			13	
AGDMENAENILTVMR	0	Unmodified	1662.7705	0.7705407	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.623	7	6	1							3	3	4	4	78.354	77.681	2;3	8.2599E-83	68368	160511_QHF_FH_JSI11i_2	253.54	213.75			0.9416	1.0137	22.109	14	1	Median	1.4102	1.208	6.2414	3	1	Median	0.85896	0.99995	6.3363	3	0	Plateau	1.0895	1.0704	18.239	4	0	Median	0.71573	0.7698	7.8579	4	0	Median	2276500000	1172300000	1104200000	386260000	156870000	229400000	636710000	344200000	292510000	693310000	335400000	357910000	560220000	335840000	224380000	1930	1544	1825	11466;11467;11468;11469;11470;11471;11472;11473;11474;11475;11476;11477;11478;11479	15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674	15672			26	
AGDMENAENILTVMR	0	Oxidation (M)	1678.7655	0.76545532	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	61.495	60.917	2	0.00039924	54035	160511_QHF_FH_JSI12i_1	73.082	57.938			0.78391	0.76711	26.102	5	3	Median	0.75779	0.63003	NaN	1	1	Median	0.9139	1.0568	19.262	2	1	Median	0.81395	0.76711	NaN	1	0	Median	0.64457	0.68424	NaN	1	1	Median	240900000	135240000	105660000	44573000	21181000	23392000	82273000	43705000	38568000	64585000	38089000	26496000	49469000	32264000	17205000	1931	1544	1825	11480;11481;11482;11483;11484;11485	15675;15676;15677;15678;15679	15676		1210;1211	5	
AGDNILAVLK	1	Unmodified	1012.5917	0.59169534	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	69.421	68.748	2	2.5599E-05	59288	160511_QHF_FH_JSI12i_2	97.565	75.328			0.94092	0.91182	33.701	6	0	Median	1.0175	0.85543	NaN	1	0	Median	0.91457	1.0579	NaN	1	0	Median	1.0945	1.0732	14.012	2	0	Median	0.53122	0.57568	29.862	2	0	Median	382650000	208300000	174350000	75222000	38036000	37186000	38961000	18649000	20312000	143990000	72107000	71884000	124480000	79508000	44973000	1932	3248	1826	11486;11487;11488;11489;11490;11491	15680;15681;15682;15683;15684;15685	15682			5	
AGDNIPEEQPVASTPTTVSDGENKK	2	Unmodified	2583.23	0.23001911	5557	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.374	39.739	3	1.288E-25	36126	160511_QHF_FH_JSI12i_1	154.69	151.42			0.97844	1.0541	31.057	4	0	Median	1.7381	1.4512	NaN	1	0	Median	0.90176	1.062	NaN	1	0	Median	1.0616	1.0463	NaN	1	0	Median	0.65996	0.68134	NaN	1	0	Median	494140000	263340000	230800000	95831000	37408000	58424000	134400000	75487000	58916000	136910000	64893000	72022000	126990000	85551000	41437000	1933	5557	1827	11492;11493;11494;11495	15686;15687;15688;15689;15690;15691;15692;15693;15694;15695	15690			10	
AGDPVILYVNK	1	Unmodified	1187.655	0.65502388	276	O15321	TM9SF1	Transmembrane 9 superfamily member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2			1	1	2	1	55.982	55.199	2	9.4043E-06	49970	160511_QHF_FH_JSI11i_1	126.07	104.32			1.2968	1.1536	1.8352	2	2	Median	1.3973	1.1387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2035	1.1686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144520000	66750000	77774000	55869000	22848000	33022000	0	0	0	88655000	43903000	44752000	0	0	0	1934	276	1828	11496;11497;11498;11499;11500	15696;15697;15698;15699;15700	15696			5	
AGDQIICMDDVYGGTNR	0	Unmodified	1883.8142	0.81419642	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	62.531	61.901	2;3	1.5711E-16	56405	160511_QHF_FH_JSI12i_1	122.34	111.73			0.82839	0.88244	17.128	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6707	0.78179	NaN	1	1	Median	1.0232	0.99606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85378000	45175000	40203000	10676000	0	10676000	40286000	28444000	11843000	34415000	16731000	17684000	0	0	0	1935	1397	1829	11501;11502;11503;11504;11505	15701;15702;15703;15704;15705;15706	15703			6	
AGDQLVPDNLK	1	Unmodified	1168.6088	0.60880197	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.535	42.899	2	0.011847	38941	160511_QHF_FH_JSI12i_1	55.401	41.631			0.8026	0.82594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8026	0.82594	NaN	1	1	Median	30977000	17755000	13221000	0	0	0	0	0	0	0	0	0	30977000	17755000	13221000	1936	2612	1830	11506	15707	15707			1	
AGDSEQTLQNHQQPNGGEPFLIGVSGGTASGK	1	Unmodified	3180.5072	0.50719703	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.578	60.938	3	2.2518E-26	55015	160511_QHF_FH_JSI10i_1	124.82	118.39			0.49738	0.62045	35.674	4	4	Linear	1.8931	1.5436	NaN	1	1	Median	0.57307	0.67071	NaN	1	1	Median	1.2703	1.2235	NaN	1	1	Median	0.89439	0.95483	NaN	1	1	Median	100180000	57797000	42383000	16638000	3942200	12696000	40579000	31382000	9196800	19889000	7003900	12885000	23075000	15469000	7606200	1937	4574	1831	11507;11508;11509;11510	15708;15709;15710;15711;15712	15710			5	
AGDSEQTLQNHQQPNGGEPFLIGVSGGTASGK	1	Acetyl (Protein N-term)	3222.5178	0.51776171	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	72.222	71.76	3	3.5807E-07	65417	160511_QHF_FH_JSI12i_1	58.565	56.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27256000	17846000	9409500	0	0	0	0	0	0	17846000	17846000	0	9409500	0	9409500	1938	4574	1831	11511;11512	15713;15714;15715	15715			3	
AGDTLQGIALK	1	Unmodified	1085.6081	0.60807369	3403	Q8IV50	LYSMD2	LysM and putative peptidoglycan-binding domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.258	48.041	2	0.00010655	42705	160511_QHF_FH_JSI9i_1	98.048	63.241			1.9488	1.6652	NaN	1	1	Median	1.9488	1.6652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32308000	12038000	20270000	32308000	12038000	20270000	0	0	0	0	0	0	0	0	0	1939	3403	1832	11513	15716	15716			1	
AGDTVIPLYIPQCGECK	1	Unmodified	1919.9121	0.91211956	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	1	3	1	78.61	78.12	2;3	9.5318E-08	69367	160511_QHF_FH_JSI9i_1	128.67	95.728			0.89416	0.8573	26.134	7	6	Median	1.3854	1.1163	3.5713	2	2	Median	0.65809	0.74824	NaN	1	1	Median	0.89416	0.8573	25.801	3	2	Median	0.57615	0.60997	NaN	1	1	Median	160800000	90699000	70103000	26084000	10207000	15877000	21026000	12116000	8910500	91714000	52969000	38745000	21979000	15408000	6571000	1940	1006	1833	11514;11515;11516;11517;11518;11519;11520;11521	15717;15718;15719;15720;15721;15722;15723;15724;15725	15723			9	
AGEAAELQDAEVESSAK	1	Unmodified	1703.785	0.78498801	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	37.607	36.994	2	9.3537E-16	33407	160511_QHF_FH_JSI12i_1	163.99	157.89			0.67911	0.73064	17.18	4	0	Median	1.1702	0.96772	NaN	1	0	Median	0.64496	0.76932	NaN	1	0	Median	0.71506	0.6939	NaN	1	0	Median	0.64019	0.6557	NaN	1	0	Median	609080000	387750000	221330000	120290000	59025000	61263000	187530000	131510000	56026000	167630000	105510000	62120000	133630000	91704000	41926000	1941	5166	1834	11522;11523;11524;11525;11526	15726;15727;15728;15729;15730;15731;15732;15733	15728			8	
AGEAGKLEEVMQELR	1	Unmodified	1658.8298	0.82977013	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									3	1	72.251	72.153	2;3	9.4106E-05	64168	160511_QHF_FH_JSI11i_3	90.561	77.442			1.4687	1.4183	35.582	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3988	1.3416	7.8602	2	0	Median	0.74006	0.72988	NaN	1	1	Median	256440000	116980000	139460000	0	0	0	0	0	0	229400000	98856000	130550000	27038000	18125000	8912800	1942	4366	1835	11527;11528;11529;11530	15734;15735;15736;15737	15734			4	
AGEAPTENPAPPTQQSSAE	0	Unmodified	1880.8388	0.8388145	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	3	1	31.609	28.31	2;3	7.3812E-18	25442	160511_QHF_FH_JSI10i_1	159.12	153.52			1.0259	1.0396	15.404	6	0	Median	1.4001	1.1443	NaN	1	0	Median	0.86911	1.0117	NaN	1	0	Median	1.0814	1.0684	10.774	3	0	Median	0.73603	0.76036	NaN	1	0	Median	463820000	250760000	213060000	90931000	40853000	50078000	138620000	75252000	63369000	116130000	57824000	58302000	118150000	76836000	41310000	1943	1106	1836	11531;11532;11533;11534;11535;11536	15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748	15743			11	
AGEARPGPTAESASGPSEDPSVNFLK	1	Unmodified	2570.2249	0.22487416	2427	Q13501	SQSTM1	Sequestosome-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	2	3	54.601	53.792	3	1.962E-36	46129	160511_QHF_FH_JSI12i_3	168.25	155.38			0.85653	0.83958	26.036	8	5	Median	1.3829	1.2081	4.7195	2	2	Median	0.96662	1.1654	NaN	1	0	Median	0.85653	0.83958	6.0245	2	1	Median	0.6275	0.61875	11.293	3	2	Plateau	995130000	511590000	483540000	234290000	85865000	148420000	156770000	72039000	84735000	362440000	214770000	147670000	241630000	138910000	102720000	1944	2427	1837	11537;11538;11539;11540;11541;11542;11543;11544	15749;15750;15751;15752;15753;15754;15755;15756;15757;15758	15758			10	
AGEDAVWVLDSGSVR	0	Unmodified	1559.758	0.7579854	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		69.202	68.815	2	0.00082937	62570	160511_QHF_FH_JSI11i_1	83.617	56.944			1.1593	1.1375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1593	1.1375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45137000	21592000	23545000	0	0	0	0	0	0	45137000	21592000	23545000	0	0	0	1945	3183	1838	11545;11546	15759;15760	15759			2	
AGEELLK	1	Unmodified	758.41742	0.41741937	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	21.659	20.933	2	0.011756	18397	160511_QHF_FH_JSI12i_1	60.76	17.76			1.2203	1.1964	3.9107	2	1	Median	1.3998	1.1638	NaN	1	1	Median	1.0637	1.23	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283760000	128980000	154790000	162840000	75112000	87724000	120930000	53864000	67063000	0	0	0	0	0	0	1946	5378	1839	11547;11548;11549	15761;15762;15763	15761			3	
AGEGLEELK	1	Unmodified	944.48148	0.48147619	5779				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	26.882	26.304	2	0.0014694	22760	160511_QHF_FH_JSI9i_1	68.915	21.066	+		1.3643	1.2014	19.082	8	0	Median	1.4835	1.1869	0	2	0	Median	0.88497	1.0523	0	2	0	Median	1.2547	1.2161	0	2	0	Median	1.6192	1.7017	0	2	0	Median	2050200000	945430000	1104800000	490370000	215240000	275130000	359750000	189960000	169790000	600110000	291990000	308110000	600000000	248240000	351750000	1947	5779	1840	11550;11551;11552;11553;11554;11555;11556;11557	15764;15765;15766;15767;15768;15769	15767			5	
AGEGLGTSSGDAISGTDHNSLDSSLTR	0	Unmodified	2604.1899	0.18994521	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		51.509	50.833	3	1.3114E-17	45798	160511_QHF_FH_JSI10i_1	102.27	95.278			1.1353	1.3514	14.101	3	0	Plateau	1.6088	1.3514	NaN	1	0	Median	1.2709	1.4309	NaN	1	0	Median	1.1353	1.0948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109740000	47585000	62155000	27456000	10231000	17225000	34086000	15445000	18641000	48199000	21910000	26289000	0	0	0	1948	5403	1841	11558;11559;11560	15770;15771;15772	15771			3	
AGEGLWVILHLYK	1	Unmodified	1497.8344	0.83438523	4676	Q9H2J4	PDCL3	Phosducin-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	89.968	81.673	2;3	1.6732E-25	47017	160513_QHF_FH_JSI10Kac_6	163.51	143.77			0.90974	0.91304	13.977	8	2	Median	1.097	0.93502	2.6006	2	0	Median	0.69979	0.83559	11.774	2	0	Median	1.1004	1.0519	1.526	2	1	Median	0.71994	0.75594	0.18141	2	1	Median	2768100000	1463900000	1304200000	591830000	283190000	308640000	977320000	583760000	393560000	718520000	329050000	389470000	480390000	267860000	212540000	1949	4676	1842	11561;11562;11563;11564;11565;11566;11567;11568	15773;15774;15775;15776;15777;15778;15779;15780	15780			8	
AGEGNEEISNMIHSYIK	1	Unmodified	1890.8782	0.87817689	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.913	74.669	3	0.0011375	64498	160511_QHF_FH_JSI12i_2	58.672	52.641			0.97281	1.1202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97281	1.1202	NaN	1	1	Median	54295000	27060000	27235000	0	0	0	0	0	0	0	0	0	54295000	27060000	27235000	1950	3276	1843	11569	15781	15781			1	
AGEGTYALDSESCMEK	1	Unmodified	1746.7077	0.70766567	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			39.04	38.659	2	0.0008557	34650	160511_QHF_FH_JSI10i_1	63.727	57.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1951	150	1844	11570	15782	15782			1	
AGEKSVK	2	Acetyl (K)	759.41267	0.41266834	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			7.466	0.12344	2	0.02551	2696	160513_QHF_FH_JSI10Kac_3	73.208	24.646			0.7808	0.94204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7808	0.94204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50011000	28071000	21939000	0	0	0	50011000	28071000	21939000	0	0	0	0	0	0	1952	3341	1845	11571	15783	15783	2846		1	
AGELADKK	2	Unmodified	830.44978	0.44978213	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		5.2461	5.052	2	0.058263	2848	160511_QHF_FH_JSI11i_2	49.715	8.0627			3.5828	3.6028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5828	3.6028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68916000	15354000	53562000	0	0	0	0	0	0	68916000	15354000	53562000	0	0	0	1953	4449	1846	11572	15784	15784			1	
AGELTEDEVER	0	Unmodified	1246.5677	0.56772501	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	25.732	22.918	2	3.2106E-07	19757	160511_QHF_FH_JSI9i_1	119.68	100.9			0.78894	0.78299	33.441	7	2	Median	2.3365	1.8909	NaN	1	0	Median	0.69186	0.80649	NaN	1	0	Median	0.80219	0.77735	1.0222	2	0	Median	0.71591	0.75785	12.171	3	2	Median	490730000	220340000	270390000	175120000	43746000	131380000	72191000	40475000	31716000	86606000	51462000	35144000	156810000	84657000	72157000	1954	1993	1847	11573;11574;11575;11576;11577;11578;11579	15785;15786;15787;15788;15789;15790;15791;15792;15793;15794;15795	15793			11	
AGELWLPHGTVATPVFMPVGTQATMK	1	Unmodified	2738.3924	0.39241395	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	99.759	99.673	3	3.4541E-32	86024	160511_QHF_FH_JSI12i_3	153.1	149.76			0.89993	0.94406	24.91	6	1	Median	1.5648	1.3641	NaN	1	0	Median	0.71512	0.87464	NaN	1	0	Median	1.0695	1.0451	3.5844	2	1	Median	0.68511	0.72756	10.671	2	0	Median	275440000	143910000	131530000	24225000	8985900	15239000	38367000	22013000	16354000	104840000	53730000	51109000	108010000	59180000	48831000	1955	4522	1848	11580;11581;11582;11583;11584;11585	15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806	15806			11	
AGEPDGESLDEQPSSSSSK	1	Unmodified	1905.8076	0.80757395	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.371	21.84	2	1.4557E-25	18872	160511_QHF_FH_JSI10i_1	183	174.25			1.0042	1.0827	21.056	4	0	Median	1.446	1.2089	NaN	1	0	Median	0.82421	0.97602	NaN	1	0	Median	1.2234	1.2012	NaN	1	0	Median	0.7535	0.77492	NaN	1	0	Median	205090000	102590000	102500000	63524000	30270000	33255000	42999000	23053000	19946000	44238000	17673000	26565000	54331000	31596000	22734000	1956	4701	1849	11586;11587;11588;11589	15807;15808;15809;15810;15811	15810			5	
AGEQIYIFYGTR	0	Unmodified	1416.7038	0.70376498	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	73.537	64.825	2	5.0771E-12	34513	160513_QHF_FH_JSI9Kac_6	122.18	101.31			0.93136	1.0096	24.397	4	0	Median	1.3401	1.1398	NaN	1	0	Median	0.81847	0.97548	NaN	1	0	Median	1.0598	1.0449	NaN	1	0	Median	0.61147	0.65635	NaN	1	0	Median	102780000	53808000	48967000	26055000	11056000	14999000	28194000	15243000	12951000	25144000	13293000	11850000	23383000	14216000	9167200	1957	3312	1850	11590;11591;11592;11593	15812;15813;15814;15815	15812			4	
AGEQLAPFLPQLVPR	0	Unmodified	1634.9144	0.91442646	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							1	2	4	1	98.359	98.235	2;3	0.00011036	86269	160511_QHF_FH_JSI11i_2	100.55	90.6			0.88902	0.98302	65.798	8	3	Median	1.5113	1.3337	NaN	1	0	Median	0.93403	1.1002	16.706	2	1	Median	0.88631	0.88838	87.777	4	2	Median	0.69113	0.76831	NaN	1	0	Median	272690000	152960000	119740000	46085000	18962000	27123000	58164000	32776000	25388000	134370000	80155000	54214000	34073000	21064000	13009000	1958	2997	1851	11594;11595;11596;11597;11598;11599;11600;11601	15816;15817;15818;15819;15820;15821;15822;15823;15824;15825	15823			10	
AGEQQETASR	0	Unmodified	1075.4894	0.48941511	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					2	1	1	4.5995	2.5643	2	3.3919E-06	2235	160511_QHF_FH_JSI10i_1	163.38	127.5			0.80899	0.85791	25.96	4	3	Median	NaN	NaN	NaN	0	0	Median	0.84706	0.99265	14.066	2	2	Median	0.85535	0.819	NaN	1	0	Median	0.54966	0.58856	NaN	1	1	Median	978300000	553060000	425240000	0	0	0	705310000	380540000	324780000	4783500	2430200	2353300	268200000	170100000	98109000	1959	2587	1852	11602;11603;11604;11605	15826;15827;15828;15829	15828			4	
AGEVFIHK	1	Unmodified	899.4865	0.48650199	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.3		8	10					1	8	7	7	6	7	22.654	19.337	2;3	0.0012187	16297	160511_QHF_FH_JSI11i_3	100.45	53.384			0.98251	1.142	51.125	27	4	Median	1.4364	1.1728	55.308	7	2	Median	0.9463	1.0669	12.074	7	0	Median	1.3474	1.3487	18.501	6	0	Median	0.55101	0.60488	56.669	7	2	Median	7751900000	3619200000	4132700000	1208800000	382760000	826000000	1587900000	786530000	801340000	2887300000	1248700000	1638600000	2068000000	1201200000	866790000	1960	2644	1853	11606;11607;11608;11609;11610;11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625;11626;11627;11628;11629;11630;11631;11632	15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867;15868;15869	15834			40	
AGEVFIHKDK	2	Acetyl (K)	1184.619	0.61897272	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.687							2	6	4	1	3	6	2	39.079	29.354	2;3	0.00012234	16873	160513_QHF_FH_JSI11Kac_5	89.403	70.658			0.43698	0.42914	181.99	11	3	Median	0.93688	0.79736	NaN	1	0	Median	1.2719	1.5189	12.769	3	0	Median	0.35101	0.34467	217.78	5	2	Median	0.078283	0.085785	183.06	2	1	Median	180820000	120660000	60158000	3754800	1996100	1758700	25047000	12654000	12393000	132410000	89856000	42559000	19605000	16157000	3447800	1961	2644	1854	11633;11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644	15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881;15882;15883;15884;15885	15878	2605		16	
AGEVINQPMMMAAR	0	Unmodified	1517.7153	0.71527442	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.48	5	4	2				2			3	3	4	3	55.587	53.765	2	1.2157E-29	48399	160511_QHF_FH_JSI10i_1	220.94	177.63			0.90534	0.97659	18.346	10	4	Median	1.4742	1.2382	8.9443	2	1	Median	0.80559	0.95741	3.7978	2	0	Median	1.0163	0.98473	3.7261	3	1	Median	0.71099	0.76149	7.3208	3	2	Median	2167200000	1132400000	1034900000	328380000	140900000	187480000	507500000	277720000	229790000	654340000	332440000	321900000	676990000	381290000	295700000	1962	1139	1855	11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657	15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904	15894			19	
AGEVINQPMMMAAR	0	Oxidation (M)	1533.7102	0.71018905	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.906	45.221	2	0.0022869	40866	160511_QHF_FH_JSI11i_1	64.82	54.815			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1963	1139	1855	11658;11659;11660	15905;15906;15907	15905		767;768;769	3	
AGEVPSPEAGR	0	Unmodified	1068.52	0.51998696	5267	Q9UDX5	MTFP1	Mitochondrial fission process protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.32	16.862	2	0.015514	14448	160511_QHF_FH_JSI12i_1	44.863	28.982			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1964	5267	1856	11661	15908	15908			1	
AGFAGDDAPR	0	Unmodified	975.44101	0.44100836	2062;1916;2070;2015	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P62736;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.97	6.25	5	4	4		1	4	4	4	4	8	7	7	8	19.938	14.957	2	1.4598E-28	5588	160513_QHF_FH_JSI9Kac_3	176.79	111.75			0.93274	0.99782	33.066	28	5	Median	1.7567	1.5661	13.246	6	1	Median	0.90767	1.0467	7.5477	7	1	Median	1.0186	0.99082	3.3226	7	1	Median	0.49198	0.50896	15.89	8	2	Linear	73429000000	37119000000	36310000000	16250000000	5271200000	10979000000	20648000000	10961000000	9687800000	19889000000	9918400000	9970600000	16641000000	10968000000	5672700000	1965	1916;2015;2062;2070	1857	11662;11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691	15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941;15942;15943;15944;15945;15946;15947;15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961	15932			53	
AGFAGDQIPK	1	Unmodified	1002.5134	0.51344502	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.63	4	3				1	2			2	3	2	3	37.02	33.319	2	2.7359E-08	29213	160511_QHF_FH_JSI9i_1	126.07	87.276			0.96445	1.1223	32.845	9	0	Median	1.9487	1.6354	4.4619	2	0	Median	0.93105	1.1223	9.9504	3	0	Median	1.1174	1.0914	20.45	2	0	Median	0.63256	0.68854	20.575	2	0	Median	2529000000	1162900000	1366000000	626940000	225590000	401350000	752010000	363640000	388370000	758990000	349620000	409370000	391030000	224100000	166930000	1966	1524;1941	1858	11692;11693;11694;11695;11696;11697;11698;11699;11700;11701	15962;15963;15964;15965;15966;15967;15968;15969;15970;15971;15972;15973	15970			11	
AGFAVNFFK	1	Unmodified	999.5178	0.51780212	1030	P13497	BMP1	Bone morphogenetic protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		76.188	74.75	2	0.0003448	61546	160511_QHF_FH_JSI9i_3	91.906	34.347			1.9371	1.6303	NaN	1	1	Median	1.9371	1.6303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12134000	4396700	7737300	12134000	4396700	7737300	0	0	0	0	0	0	0	0	0	1967	1030	1859	11702;11703	15974;15975	15975			2	
AGFFGTVVEYGAER	0	Unmodified	1501.7201	0.72014333	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		74.767	73.805	2	0.00032938	61916	160511_QHF_FH_JSI10i_3	96.64	70.126			0.83984	0.78832	49.44	3	1	Plateau	2.4011	1.9827	NaN	1	1	Median	0.79309	0.91809	NaN	1	0	Median	0.83984	0.78832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129370000	67921000	61447000	28507000	8661000	19846000	42239000	26427000	15812000	58622000	32833000	25789000	0	0	0	1968	5032	1860	11704;11705;11706	15976;15977;15978;15979	15977			4	
AGFGAMEK	1	Acetyl (Protein N-term)	851.38474	0.38473903	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	43.364	42.645	1;2	0.00053606	38584	160511_QHF_FH_JSI12i_1	61.962	58.35			0.97564	0.96706	22.921	9	0	Median	1.644	1.3599	43.659	3	0	Median	0.7802	0.92309	1.3583	2	0	Median	1.0062	0.99037	3.3686	2	0	Median	0.94342	0.98574	10.662	2	0	Median	1391700000	690720000	700960000	406690000	176660000	230030000	362310000	201300000	161010000	342050000	169670000	172380000	280630000	143090000	137540000	1969	220	1861	11707;11708;11709;11710;11711;11712;11713;11714;11715	15980;15981;15982;15983;15984;15985;15986;15987;15988	15982			9	
AGFGAMEK	1	Acetyl (Protein N-term);Oxidation (M)	867.37965	0.37965365	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	1	1	0	By MS/MS				1	0	1									1				43.903	42.686	2	0.0016432	37892	160511_QHF_FH_JSI9i_1	60.478	55.796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1970	220	1861	11716	15989	15989		91	1	
AGFGAMEKFLVEYK	2	Acetyl (K);Acetyl (Protein N-term)	1672.8171	0.81708018	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	1	1	0	1				By MS/MS	16	0									1				1	98.758	89.316	2	6.2653E-05	49084	160513_QHF_FH_JSI12Kac_6	128.28	108.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1971	220	1862	11717	15990	15990	118;119		1	
AGFIESTFKPNENTEESK	2	Unmodified	2026.9484	0.94836495	5156	Q9NZJ5	EIF2AK3	Eukaryotic translation initiation factor 2-alpha kinase 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.799	46.233	3	0.00012748	38617	160511_QHF_FH_JSI10i_3	68.257	51.377			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1972	5156	1863	11718	15991	15991			1	
AGFIQDTSLILYEEVKPNLTER	1	Unmodified	2535.3221	0.32206901	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		1	1						2	1	1	1	1	97.204	94.289	3	5.1318E-21	45209	160513_QHF_FH_JSI9Kac_6	122.3	97.999			0.92735	1.132	27.823	3	1	Median	1.655	1.4277	NaN	1	0	Median	0.92735	1.132	NaN	1	0	Median	0.86556	0.82041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	558240000	272610000	285620000	38481000	14882000	23599000	266710000	132910000	133790000	253050000	124820000	128230000	0	0	0	1973	3922	1864	11719;11720;11721;11722	15992;15993;15994;15995;15996	15995			4	
AGFLAFTQLPK	1	Unmodified	1191.6652	0.66519463	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	1	3	2	83.214	78.143	2	1.6293E-09	40655	160513_QHF_FH_JSI11Kac_6	137.95	109.55			1.1323	1.0892	48.325	8	2	Median	1.8992	1.5635	15	3	1	Plateau	0.81629	0.92678	NaN	1	0	Median	1.1323	1.0892	8.7391	2	0	Median	0.53838	0.55973	6.233	2	1	Median	798780000	405800000	392980000	194480000	77626000	116860000	163680000	82819000	80856000	191290000	90103000	101190000	249330000	155250000	94079000	1974	486	1865	11723;11724;11725;11726;11727;11728;11729;11730;11731	15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009	16002			13	
AGFLDLK	1	Unmodified	762.42759	0.42759012	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	53.47	52.767	2	0.0089406	45547	160511_QHF_FH_JSI11i_2	81.297	28.614			0.7359	0.84786	24.659	7	0	Median	1.4949	1.273	NaN	1	0	Median	0.69213	0.81981	5.5202	2	0	Median	0.98454	0.96561	18.391	2	0	Median	0.6184	0.66778	12.186	2	0	Median	727970000	368230000	359750000	112400000	43351000	69048000	171530000	92982000	78544000	275700000	129940000	145760000	168350000	101950000	66397000	1975	5616	1866	11732;11733;11734;11735;11736;11737;11738	16010;16011;16012;16013;16014;16015;16016;16017;16018	16015			9	
AGFLHHVK	1	Unmodified	907.50282	0.50282075	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.973	35.625	3	0.062219	30337	160511_QHF_FH_JSI12i_2	20.52	9.6471			0.1573	0.17905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1573	0.17905	NaN	1	1	Median	9904700	9077700	827020	0	0	0	0	0	0	0	0	0	9904700	9077700	827020	1976	3376	1867	11739	16019	16019			1	
AGFLYTGEGDTVR	0	Unmodified	1384.6623	0.6622941	2139	P98170	XIAP	E3 ubiquitin-protein ligase XIAP	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.38	49.432	2	0.0088604	43621	160511_QHF_FH_JSI10i_2	69.979	59.15			0.14431	0.17871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14431	0.17871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88881000	78052000	10828000	0	0	0	88881000	78052000	10828000	0	0	0	0	0	0	1977	2139	1868	11740	16020	16020			1	
AGFSGGMVVDYPNSAK	1	Unmodified	1598.7399	0.73989249	363	O43709	WBSCR22	Probable 18S rRNA (guanine-N(7))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	4	1	56.832	56.09	2	1.2702E-16	48600	160511_QHF_FH_JSI11i_2	119.69	102.46			1.1861	1.2189	27.544	9	9	Median	1.7064	1.3925	21.391	2	2	Median	0.91791	1.0865	13.352	3	3	Median	1.4185	1.241	7.9399	3	3	Plateau	0.57994	0.61386	NaN	1	1	Median	593600000	266490000	327110000	115730000	42395000	73335000	238500000	127350000	111150000	222970000	85453000	137520000	16398000	11288000	5109800	1978	363	1869	11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751	16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033	16031			13	
AGFTAAYSEK	1	Unmodified	1043.4924	0.49237523	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		26.862	25.986	2	0.0029104	21690	160511_QHF_FH_JSI11i_2	71.614	28.699			0.69922	0.69462	70.895	3	3	Plateau	2.979	2.5469	NaN	1	1	Median	0.67448	0.81349	NaN	1	1	Median	0.69922	0.69462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	161810000	89100000	72712000	7889300	2806000	5083300	53374000	26371000	27003000	100550000	59923000	40626000	0	0	0	1979	1005	1870	11752;11753;11754	16034;16035;16036	16035			3	
AGGAAAAK	1	Unmodified	615.33402	0.33402409	5834				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				0.24143	-0.25957	2	0.00811	150	160511_QHF_FH_JSI9i_1	57.463	2.0224	+		1.0602	0.88158	NaN	1	0	Median	1.0602	0.88158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118750000	59485000	59267000	118750000	59485000	59267000	0	0	0	0	0	0	0	0	0	1980	5834	1871	11755	16037	16037			1	
AGGAAVVITEPEHTK	1	Unmodified	1478.7729	0.77290718	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6	3	8	8				4	4	2	6	8	8	7	31.807	28.277	2;3	2.8588E-10	24305	160511_QHF_FH_JSI9i_2	113.76	103.11			0.92368	0.94725	21.833	25	1	Median	1.5098	1.3253	19.002	5	1	Median	0.80518	0.96686	10.571	6	0	Median	1.0549	1.065	10.338	7	0	Median	0.64166	0.71187	6.7748	7	0	Median	3777000000	2005100000	1771900000	584500000	246320000	338180000	875650000	514500000	361140000	1176500000	582850000	593690000	1140300000	661440000	478850000	1981	5200	1872	11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784	16038;16039;16040;16041;16042;16043;16044;16045;16046;16047;16048;16049;16050;16051;16052;16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078;16079;16080	16061			42	
AGGAGVPAFYTPTGYGTLVQEGGSPIK	1	Unmodified	2594.3017	0.30166791	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.37	2.44	8	15	6					1		9	8	6	7	88.756	87.846	2;3	2.0693E-131	80614	160511_QHF_FH_JSI11i_1	202.66	198.35			0.86414	0.98875	19.541	25	11	Median	1.3062	1.1302	13.252	7	5	Median	0.81073	0.96773	8.8128	6	3	Median	1.0654	1.035	15.654	6	1	Median	0.70327	0.72137	8.0457	6	2	Median	3887900000	1932600000	1955300000	1022600000	380190000	642460000	1148100000	641420000	506690000	948060000	467100000	480960000	769080000	443930000	325150000	1982	1865	1873	11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809;11810;11811;11812;11813;11814	16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126;16127;16128;16129;16130;16131;16132;16133;16134;16135;16136	16087			56	
AGGALCHILGAAYK	1	Unmodified	1400.7235	0.72345457	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		56.558	55.526	3	2.9765E-05	48824	160511_QHF_FH_JSI11i_3	82.362	77.64			0.83703	0.78237	20.97	3	0	Plateau	1.4507	1.1742	NaN	1	0	Median	0.8793	1.0081	NaN	1	0	Median	0.83703	0.77569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	229800000	117100000	112690000	57239000	17266000	39973000	72984000	36368000	36616000	99574000	63468000	36105000	0	0	0	1983	3907	1874	11815;11816;11817	16137;16138;16139;16140;16141	16137			5	
AGGANYDAQTE	0	Unmodified	1095.4469	0.4468816	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.12	4			2	1					1	1	2	3	13.696	10.307	2	0.00022614	9560	160511_QHF_FH_JSI12i_1	79.906	68.685			0.72671	0.84889	17.966	7	0	Median	1.2302	1.0288	NaN	1	0	Median	0.71266	0.84889	NaN	1	0	Median	1.0276	1.0046	11.07	2	0	Median	0.65492	0.73324	8.0409	3	0	Median	784080000	447750000	336330000	145840000	78272000	67565000	189220000	105960000	83254000	199840000	111230000	88610000	249180000	152280000	96904000	1984	2487	1875	11818;11819;11820;11821;11822;11823;11824	16142;16143;16144;16145;16146;16147;16148;16149;16150;16151;16152;16153;16154	16145			13	
AGGDAEPRPAEPPAWAGGAR	0	Unmodified	1931.9238	0.92382195	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	38.04	37.496	3	9.3505E-06	32793	160511_QHF_FH_JSI11i_3	77.514	53.715			1.0365	1.0935	23.884	4	0	Median	1.2386	1.1117	NaN	1	0	Median	0.92525	1.1477	NaN	1	0	Median	1.1611	1.0756	NaN	1	0	Median	0.65946	0.69126	NaN	1	0	Median	189230000	97751000	91481000	46765000	22211000	24553000	67058000	36884000	30174000	53513000	24735000	28778000	21896000	13920000	7975700	1985	4114	1876	11825;11826;11827;11828	16155;16156;16157;16158	16156			4	
AGGEAGVTLGQPHLSR	0	Unmodified	1548.8009	0.80085327	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	4	2	35.881	35.37	2;3	7.2042E-22	30006	160511_QHF_FH_JSI12i_3	177.81	155.28			1.0162	1.0169	31.748	10	2	Median	1.7688	1.5135	9.8199	2	0	Median	0.92412	1.1333	11.517	2	0	Median	1.0276	0.98844	9.9501	4	2	Median	0.61931	0.61524	6.8421	2	0	Median	1245600000	672440000	573210000	158150000	59922000	98226000	233960000	129030000	104930000	510170000	264320000	245850000	343370000	219170000	124200000	1986	1508	1877	11829;11830;11831;11832;11833;11834;11835;11836;11837;11838	16159;16160;16161;16162;16163;16164;16165;16166;16167;16168;16169;16170;16171;16172	16172			14	
AGGEAGVTLGQPHLSR	0	Acetyl (Protein N-term)	1590.8114	0.81141795	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.28	6	4	2			1	3			4	5	3	4	51.477	48.541	2;3	1.8531E-36	44260	160511_QHF_FH_JSI12i_1	245.15	237.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1987	1508	1877	11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849;11850;11851;11852;11853;11854	16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194	16177			22	
AGGEELDEGVAK	1	Unmodified	1173.5513	0.55134667	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	22.093	21.48	2	1.3996E-10	18533	160511_QHF_FH_JSI11i_1	128.81	104.66			1.6627	1.3526	7.8331	3	3	Plateau	1.6627	1.3526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2103	1.1882	NaN	1	1	Median	1.1162	1.1747	NaN	1	1	Median	762410000	330480000	431930000	289460000	98980000	190480000	0	0	0	244830000	113900000	130930000	228120000	117600000	110520000	1988	2804	1878	11855;11856;11857;11858;11859;11860	16195;16196;16197;16198;16199;16200	16196			6	
AGGEPWGAKK	2	Acetyl (K)	1041.5243	0.52434406	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.1	0.639						1	4	2			2	3	2	34.682	25.358	2	2.5348E-07	14905	160513_QHF_FH_JSI10Kac_4	135.71	118.47			0.7759	0.93112	212.27	7	4	Median	NaN	NaN	NaN	0	0	Median	1.481	1.7613	90.144	2	1	Median	2.3084	2.1854	347.25	3	3	Median	0.65389	0.71631	8.6552	2	0	Median	289500000	164080000	125420000	0	0	0	108000000	53942000	54061000	82540000	49669000	32871000	98958000	60471000	38487000	1989	3499	1879	11861;11862;11863;11864;11865;11866;11867	16201;16202;16203;16204;16205;16206;16207	16201	2871		7	
AGGFASALER	0	Unmodified	977.49304	0.49304393	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	2	1	36.839	36.08	2	2.0842E-07	31478	160511_QHF_FH_JSI11i_3	116.73	90.993			0.89948	0.93335	33.856	6	0	Median	1.716	1.4302	10.105	2	0	Median	0.847	0.96309	NaN	1	0	Median	0.86779	0.85228	8.4123	2	0	Median	0.56067	0.60617	NaN	1	0	Median	624230000	313750000	310490000	178710000	68137000	110580000	147440000	83046000	64398000	227300000	118760000	108540000	70775000	43802000	26973000	1990	5528	1880	11868;11869;11870;11871;11872;11873	16208;16209;16210;16211;16212;16213;16214;16215;16216;16217	16208			10	
AGGFGGGR	0	Unmodified	677.32452	0.32452204	54	CON__P12035;P12035;CON__Q01546;Q01546	KRT3;KRT76	Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral	yes	no	0	0	0	0				By MS/MS	3	0			1										1	25.677	25.645	1	0.061259	21496	160511_QHF_FH_JSI12i_3	62.338	62.338		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27923000	27923000	0	0	0	0	0	0	0	0	0	0	27923000	27923000	0	1991	54	1881	11874	16218	16218			1	
AGGFLMK	1	Oxidation (M)	738.37345	0.37344606	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			9						2	2	3	3	3	25.786	23.628	1;2	0.012901	26157	160511_QHF_FH_JSI10i_3	83.229	49.491			1.0596	0.99249	64.036	10	0	Median	1.8798	1.5447	14.909	2	0	Median	2.0432	2.361	131.52	2	0	Median	1.9326	1.8333	35.652	3	0	Plateau	0.72069	0.7484	6.2581	3	0	Median	5411800000	2603700000	2808100000	823090000	294340000	528740000	163440000	30355000	133080000	1292100000	473730000	818380000	3133200000	1805200000	1327900000	1992	775	1882	11875;11876;11877;11878;11879;11880;11881;11882;11883;11884;11885	16219;16220;16221;16222;16223;16224;16225;16226	16221		282	8	
AGGFLMK	1	Unmodified	722.37853	0.37853144	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.25	1	5	5					1	4	4	4	4	4	35.113	31.482	2	0.005487	26399	160511_QHF_FH_JSI10i_3	94.669	76.902			1.0458	1.0733	62.737	15	1	Median	1.7663	1.5577	16.316	4	0	Linear	0.8979	1.0733	18.256	3	0	Median	1.0671	1.0399	110.83	4	0	Median	0.5762	0.59166	53.984	4	1	Median	41304000000	18862000000	22442000000	8281700000	3147400000	5134300000	8544000000	4012400000	4531600000	11933000000	5424100000	6509300000	12545000000	6277800000	6267200000	1993	775	1882	11886;11887;11888;11889;11890;11891;11892;11893;11894;11895;11896;11897;11898;11899;11900;11901	16227;16228;16229;16230;16231;16232;16233;16234;16235;16236;16237;16238;16239;16240;16241;16242;16243;16244;16245;16246;16247;16248;16249;16250;16251;16252;16253	16235			27	
AGGFLMKK	2	Unmodified	850.47349	0.47349446	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	20.719	19.91	2;3	0.0033805	16093	160511_QHF_FH_JSI9i_3	51.854	25.252			0.46092	0.44487	17.098	3	0	Median	0.46092	0.36885	NaN	1	0	Median	0.38108	0.44487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52663	0.51895	NaN	1	0	Median	667480000	414450000	253030000	262360000	152090000	110280000	185710000	142950000	42757000	0	0	0	219410000	119410000	99996000	1994	775	1883	11902;11903;11904;11905	16254;16255;16256;16257	16255			4	
AGGFLMKK	2	Acetyl (K);Oxidation (M)	908.47897	0.47897377	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	1	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	1	2	2	2	39.879	30.425	2	0.0029378	17504	160513_QHF_FH_JSI11Kac_5	84.699	53.409			0.35086	0.3459	133.91	5	2	Median	1.2697	1.1186	NaN	1	0	Median	0.34312	0.41011	109.44	2	1	Median	0.12024	0.11809	151.98	2	1	Median	NaN	NaN	NaN	0	0	Median	64592000	50354000	14239000	3023000	1266400	1756600	11170000	6166400	5003300	36621000	29143000	7478800	13778000	13778000	0	1995	775	1883	11906;11907;11908;11909;11910;11911;11912	16258;16259;16260;16261;16262	16259	387	282	5	
AGGFLMKK	2	Acetyl (K)	892.48406	0.48405915	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	49.906	40.19	2	0.010122	20934	160513_QHF_FH_JSI12Kac_6	81.635	44.614			1.5129	1.5112	70.528	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95893	0.91777	NaN	1	1	Median	2.3868	2.4883	NaN	1	1	Median	759590000	191630000	567960000	0	0	0	0	0	0	637210000	166770000	470440000	122370000	24854000	97520000	1996	775	1883	11913;11914	16263;16264	16264	387		2	
AGGFVVGYTSSGNPIFR	0	Unmodified	1727.8631	0.86311917	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	4	5	4	2	76.3	73.506	2	2.5281E-23	38028	160513_QHF_FH_JSI11Kac_6	151.55	138.12			1.1921	1.149	20.814	10	7	Median	1.6802	1.3977	19.017	3	2	Median	0.84072	0.97487	10.412	4	4	Median	1.2164	1.1959	12.888	3	1	Median	NaN	NaN	NaN	0	0	Median	298060000	145000000	153060000	73803000	28742000	45061000	130880000	74112000	56772000	82954000	31723000	51231000	10422000	10422000	0	1997	4831	1884	11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929	16265;16266;16267;16268;16269;16270;16271;16272;16273;16274;16275;16276;16277;16278;16279;16280;16281	16269			17	
AGGGAAEQEELHYIPIR	0	Unmodified	1809.901	0.90096124	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	54.219	53.45	3	4.1293E-05	46204	160511_QHF_FH_JSI11i_2	61.815	50.961			1.1481	1.0742	16.637	5	1	Median	1.2798	1.0742	NaN	1	1	Median	0.72138	0.892	NaN	1	0	Median	1.1573	1.1111	4.5652	2	0	Median	0.70469	0.76738	NaN	1	0	Median	395750000	209180000	186570000	50051000	22602000	27449000	113380000	73769000	39615000	206990000	95951000	111040000	25324000	16855000	8469800	1998	3716	1885	11930;11931;11932;11933;11934	16282;16283;16284;16285;16286;16287	16284			6	
AGGGAGDPGLGAAAAPAPETR	0	Unmodified	1762.8598	0.85982471	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	36.712	35.48	2	2.467E-25	31818	160511_QHF_FH_JSI10i_1	143.38	119.77			1.1534	0.91866	NaN	1	1	Median	1.1534	0.91866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11695000	4042300	7652900	11695000	4042300	7652900	0	0	0	0	0	0	0	0	0	1999	2462	1886	11935;11936;11937	16288;16289;16290	16289			3	
AGGIETIANEFSDR	0	Unmodified	1478.7001	0.70013617	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	67.658	66.956	2;3	2.928E-30	57936	160511_QHF_FH_JSI12i_3	194.29	175.33			0.85447	0.90056	17.514	6	4	Median	1.2986	1.1127	2.103	2	2	Median	0.76913	0.94742	NaN	1	1	Median	0.92044	0.85603	NaN	1	0	Median	0.7134	0.76145	5.7072	2	1	Median	1757200000	940620000	816590000	734860000	333930000	400920000	444040000	266960000	177080000	102810000	47807000	55006000	475500000	291920000	183580000	2000	3852	1887	11938;11939;11940;11941;11942;11943;11944;11945	16291;16292;16293;16294;16295;16296;16297;16298;16299	16299			9	
AGGIETIANEYSDR	0	Unmodified	1494.6951	0.69505079	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.1	4	5	4				2	5		6	5	5	4	52.572	49.878	2	1.7665E-65	43008	160511_QHF_FH_JSI11i_2	229.29	212.27			1.0122	1.0395	22.807	16	5	Median	1.5586	1.2786	22.455	5	2	Median	0.76019	1.0247	16.994	4	1	Linear	1.12	1.0868	2.8331	3	1	Median	0.73592	0.7824	6.8289	4	1	Median	4928500000	2409400000	2519100000	962250000	404490000	557760000	1226200000	665880000	560370000	1496300000	678310000	818020000	1243700000	660730000	582990000	2001	1417	1888	11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956;11957;11958;11959;11960;11961;11962;11963;11964;11965	16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310;16311;16312;16313;16314;16315;16316;16317;16318;16319;16320;16321;16322;16323;16324;16325;16326;16327;16328;16329;16330;16331	16322			32	
AGGKAGKDSGK	3	2 Acetyl (K)	1058.5356	0.53563702	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	12.8	0.687					2	3	1				3	2	1	8.3315	0.62219	2	0.0059191	3095	160513_QHF_FH_JSI12Kac_3	83.397	62.876			1.401	1.5064	64.512	6	0	Median	NaN	NaN	NaN	0	0	Median	1.8165	2.1925	15.983	3	0	Plateau	1.0375	1.0137	8.5048	2	0	Median	0.51235	0.56038	NaN	1	0	Median	266910000	118210000	148700000	0	0	0	147490000	47560000	99929000	54069000	28007000	26062000	65351000	42644000	22707000	2002	945	1889	11966;11967;11968;11969;11970;11971	16332;16333;16334;16335;16336;16337;16338	16336	709;710;711		7	
AGGKAGKDSGKAK	4	3 Acetyl (K)	1299.6783	0.67827852	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	12.9	0.781					3	3	2				3	2	3	17.339	9.7628	2	7.4291E-40	7231	160513_QHF_FH_JSI12Kac_3	184.1	130.77			1.0329	1.0065	51.027	8	0	Median	NaN	NaN	NaN	0	0	Median	1.5988	1.9247	0.70903	3	0	Plateau	1.0329	1.0065	16.522	2	0	Median	0.57154	0.62517	15.024	3	0	Plateau	249970000	118180000	131790000	0	0	0	104770000	39631000	65136000	55098000	24301000	30797000	90107000	54252000	35855000	2003	945	1890	11972;11973;11974;11975;11976;11977;11978;11979	16339;16340;16341;16342;16343;16344;16345;16346;16347	16343	709;710;711;712		9	
AGGKAGKDSGKAK	4	2 Acetyl (K);Acetyl (Protein N-term)	1299.6783	0.67827852	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	2	1	0	3		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	17.383	10.159	3	2.795E-06	7085	160513_QHF_FH_JSI10Kac_3	50.897	32.151			0.97254	0.96262	57.28	5	0	Median	NaN	NaN	NaN	0	0	Median	1.7116	2.0352	5.8234	2	0	Median	0.97254	0.96262	NaN	1	0	Median	0.61303	0.65591	1.1523	2	0	Median	87185000	41170000	46015000	0	0	0	42009000	16294000	25716000	14008000	5492500	8515400	31168000	19384000	11784000	2004	945	1890	11980;11981;11982;11983;11984	16348;16349;16350;16351;16352;16353;16354	16352	709;710;711;712		7	
AGGKAGKDSGKAKTK	5	3 Acetyl (K);Acetyl (Protein N-term)	1570.8315	0.83148469	945	P0C0S5	H2AFZ	Histone H2A.Z	yes	yes	3	1	0	4		By MS/MS			12	0					1						1			26.863	19.398	3	0.0045461	9344	160513_QHF_FH_JSI10Kac_2	42.338	29.505			1.4811	1.7157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4811	1.7157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3151900	1290700	1861200	0	0	0	3151900	1290700	1861200	0	0	0	0	0	0	2005	945	1891	11985	16355	16355	709;710;711;712		1	
AGGKAGKDSGKAKTK	5	4 Acetyl (K)	1570.8315	0.83148469	945	P0C0S5	H2AFZ	Histone H2A.Z	yes	yes	4	0	0	4				By MS/MS	12	0					1								1	26.784	19.47	3	0.0069054	9670	160513_QHF_FH_JSI12Kac_2	56.215	44.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1416700	0	1416700	0	0	0	0	0	0	0	0	0	1416700	0	1416700	2006	945	1891	11986	16356	16356	709;710;711;712		1	
AGGKHNDLDDVGK	2	Acetyl (K)	1366.6477	0.64770667	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By matching	By MS/MS		15	0.707							1	2	1		1	3		24.845	15.442	2;3	0.0097289	9570	160513_QHF_FH_JSI11Kac_6	40.552	32.039			0.28305	0.27471	102.24	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4349	1.7418	NaN	1	0	Median	0.29301	0.29118	26.732	3	0	Plateau	NaN	NaN	NaN	0	0	Median	34369000	25733000	8635800	0	0	0	4645500	2159400	2486100	29724000	23574000	6149700	0	0	0	2007	1664	1892	11987;11988;11989;11990	16357;16358;16359;16360	16357	1686		4	
AGGLDWPEATEVSPSR	0	Unmodified	1670.79	0.79001381	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				62.83	61.762	2	0.019386	54812	160511_QHF_FH_JSI9i_1	49.31	31.874			2.4606	2.0463	NaN	1	1	Median	2.4606	2.0463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87443000	23524000	63918000	87443000	23524000	63918000	0	0	0	0	0	0	0	0	0	2008	5608	1893	11991	16361	16361			1	
AGGPATPLSPTR	0	Unmodified	1123.5986	0.59857163	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.6	4.72		3	1				1			1	1	1	2	27.944	24.836	2	0.00025333	20828	160511_QHF_FH_JSI12i_2	77.14	60.37			1.0295	1.0829	13.059	4	0	Median	1.3686	1.147	NaN	1	0	Median	0.84245	1.0224	NaN	1	0	Median	1.258	1.2638	NaN	1	0	Median	0.82583	0.93772	NaN	1	0	Median	175760000	85863000	89899000	64377000	28107000	36270000	55252000	29735000	25518000	5013700	1970400	3043300	51119000	26050000	25069000	2009	2207	1894	11992;11993;11994;11995;11996	16362;16363;16364	16362			3	
AGGPEGPPWLPR	0	Unmodified	1232.6302	0.63020611	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	59.267	58.771	2	0.0031118	52040	160511_QHF_FH_JSI11i_3	81.338	60.467			1.3462	1.2848	19.577	3	3	Plateau	1.0878	0.93133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1026	1.0763	25.039	2	2	Median	NaN	NaN	NaN	0	0	Median	131890000	70354000	61535000	35660000	17357000	18304000	0	0	0	96228000	52997000	43231000	0	0	0	2010	2509	1895	11997;11998;11999;12000	16365;16366;16367;16368	16365			4	
AGGPGLER	0	Unmodified	755.3926	0.3926016	1192;512	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	6.17	3	4						3		2	3	3	2	10.07	6.969	2	0.00083418	6626	160511_QHF_FH_JSI12i_2	97.602	51.72			0.98149	1.0586	21.025	10	0	Median	1.6534	1.3872	3.2759	2	0	Median	0.81272	1.0402	6.3661	3	0	Plateau	1.0494	1.0691	1.8289	3	0	Plateau	0.67301	0.74749	2.0717	2	0	Median	6351200000	3219800000	3131400000	1273200000	494680000	778500000	2157700000	1160000000	997660000	1994700000	1040900000	953830000	925610000	524190000	401430000	2011	1192;512	1896	12001;12002;12003;12004;12005;12006;12007;12008;12009;12010	16369;16370;16371;16372;16373;16374;16375	16369			7	
AGGPLGLSIVGGSDHSSHPFGVQEPGVFISK	1	Unmodified	3032.5356	0.53558403	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.128	89.561	4	9.6999E-23	75172	160511_QHF_FH_JSI10i_3	104.87	102.56			0.90667	0.95304	29.745	4	1	Median	1.5459	1.2311	NaN	1	0	Median	0.84434	0.98185	NaN	1	0	Median	0.9736	0.92508	NaN	1	0	Median	0.56377	0.60391	NaN	1	1	Median	299450000	146640000	152810000	52582000	22578000	30004000	62148000	32229000	29920000	165530000	78529000	86999000	19188000	13301000	5887100	2012	2506	1897	12011;12012;12013;12014	16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386	16382			11	
AGGPTTPLSPTR	0	Unmodified	1153.6091	0.60913632	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.663	5	4	1							2	3	2	3	25.963	25.309	2	1.2291E-10	21291	160511_QHF_FH_JSI11i_2	142.83	129.79			1.139	1.1749	30.023	9	0	Median	1.8029	1.5054	35.057	2	0	Median	0.98314	1.1906	21.734	2	0	Median	1.3431	1.3282	12.839	2	0	Median	0.73521	0.78491	9.4969	3	0	Median	2199800000	989920000	1209900000	446200000	156180000	290020000	431290000	173810000	257480000	719150000	312160000	406980000	603140000	347770000	255370000	2013	1180	1898	12015;12016;12017;12018;12019;12020;12021;12022;12023;12024	16387;16388;16389;16390;16391;16392;16393;16394;16395;16396;16397;16398;16399;16400	16397			14	
AGGSAALSPSK	1	Unmodified	944.49271	0.49270958	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	10.746	10.313	2	4.4943E-05	7752	160511_QHF_FH_JSI9i_1	96.342	71.566			0.76801	0.74408	32.372	3	0	Median	1.4553	1.1848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76801	0.74408	NaN	1	0	Median	0.59462	0.63571	NaN	1	0	Median	828920000	401480000	427440000	283640000	100080000	183570000	0	0	0	284020000	157590000	126420000	261260000	143820000	117440000	2014	3834	1899	12025;12026;12027;12028;12029;12030;12031	16401;16402;16403;16404;16405;16406;16407;16408	16405			7	
AGGSAALSPSKK	2	Unmodified	1072.5877	0.58767259	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	7.6581	7.3585	2;3	5.9256E-05	5181	160511_QHF_FH_JSI10i_3	97.456	70.202			1.2481	1.1809	51.403	7	1	Median	2.1031	1.6908	3.4253	2	0	Median	0.92239	1.0619	41.814	2	1	Median	0.8539	0.78895	57.035	2	0	Median	0.52707	0.52582	NaN	1	0	Median	453850000	209090000	244760000	167320000	45772000	121550000	153210000	81569000	71638000	57242000	33278000	23965000	76081000	48475000	27606000	2015	3834	1900	12032;12033;12034;12035;12036;12037;12038	16409;16410;16411;16412;16413;16414	16411			6	
AGGSASAMLQPLLDNQVGFK	1	Unmodified	2003.0146	0.014610792	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.812	9	8	7							6	6	6	6	92.941	92.554	2;3	3.7104E-55	83825	160511_QHF_FH_JSI10i_1	224.42	210.46			1.063	1.0504	19.367	21	1	Median	1.4637	1.2302	8.3091	4	1	Median	0.88508	1.1064	17.978	5	0	Median	1.0665	1.1468	7.0612	6	0	Linear	0.76205	0.79691	15.112	6	0	Median	3936200000	1955600000	1980600000	515070000	216270000	298800000	900570000	469620000	430950000	1300900000	590330000	710530000	1219700000	679390000	540330000	2016	1177	1901	12039;12040;12041;12042;12043;12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062	16415;16416;16417;16418;16419;16420;16421;16422;16423;16424;16425;16426;16427;16428;16429;16430;16431;16432;16433;16434;16435;16436;16437;16438;16439;16440;16441;16442;16443;16444;16445;16446;16447;16448;16449;16450;16451;16452;16453;16454;16455;16456;16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472	16445			58	
AGGSASAMLQPLLDNQVGFK	1	Oxidation (M)	2019.0095	0.0095254139	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	7	5.66			2					1				1	2	76.239	75.963	2;3	3.0518E-13	65988	160511_QHF_FH_JSI12i_3	139.89	117.69			0.66615	0.70809	14.514	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66615	0.70809	14.514	2	1	Median	126880000	48504000	78375000	0	0	0	0	0	0	0	0	0	126880000	48504000	78375000	2017	1177	1901	12063;12064;12065	16473;16474;16475;16476	16476		799	4	
AGGSLCHILAAAYK	1	Unmodified	1430.734	0.73401926	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			10						2	3	3	3	3	59.447	56.809	2;3	3.8448E-17	48384	160511_QHF_FH_JSI12i_3	133.81	120.22			0.91509	1.0017	38.951	10	4	Median	1.5712	1.2514	24.539	3	1	Median	0.86654	0.99001	14.829	3	2	Median	0.91178	0.83942	48.842	3	1	Median	0.82396	0.82379	NaN	1	0	Median	609050000	315820000	293230000	123720000	46107000	77610000	165350000	88664000	76682000	230540000	138810000	91730000	89451000	42241000	47210000	2018	3685	1902	12066;12067;12068;12069;12070;12071;12072;12073;12074;12075;12076;12077	16477;16478;16479;16480;16481;16482;16483;16484;16485;16486;16487;16488;16489	16488			12	
AGGSPAPGPETPAISPSK	1	Unmodified	1619.8155	0.81550028	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.549	35.941	2	1.8098E-07	32674	160511_QHF_FH_JSI12i_1	143.94	130.35			1.0875	1.1263	24.178	4	2	Median	1.3901	1.1482	NaN	1	1	Median	0.94016	1.1048	NaN	1	0	Median	1.2579	1.2304	NaN	1	1	Median	0.70535	0.72117	NaN	1	0	Median	348980000	169330000	179650000	89209000	41829000	47379000	88401000	40578000	47823000	85238000	40101000	45137000	86135000	46821000	39314000	2019	1402	1903	12078;12079;12080;12081	16490;16491;16492;16493;16494;16495	16492			6	
AGGTDAPSANGEAGGESTK	1	Unmodified	1675.7285	0.72853576	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.662	10.278	2	1.3062E-53	8077	160511_QHF_FH_JSI10i_1	212.11	194.3			1.068	0.99388	17.675	4	0	Median	1.3263	1.0981	NaN	1	0	Median	0.75188	0.89953	NaN	1	0	Median	1.3281	1.2945	NaN	1	0	Median	0.85996	0.89691	NaN	1	0	Median	197910000	102610000	95294000	44215000	22829000	21386000	54556000	32369000	22187000	53079000	23543000	29536000	46057000	23872000	22184000	2020	5114	1904	12082;12083;12084;12085	16496;16497;16498;16499;16500	16499			5	
AGGTEIGKTLAEK	2	Acetyl (K)	1315.6983	0.69834526	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	49.148	39.228	2	5.7259E-05	21828	160513_QHF_FH_JSI12Kac_3	94.191	52.191			0.87466	0.87161	27.261	5	0	Median	NaN	NaN	NaN	0	0	Median	0.98522	1.1558	2.8641	2	0	Median	0.87466	0.87161	NaN	1	0	Median	0.61874	0.67133	3.4273	2	0	Median	28964000	16954000	12010000	0	0	0	12857000	6635500	6221600	3411500	1786600	1625000	12695000	8532000	4163300	2021	657	1905	12086;12087;12088;12089;12090	16501;16502;16503;16504;16505	16503	327		5	
AGGTGPGEEK	1	Unmodified	901.41412	0.4141249	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				2	2	1	1	4.7512	4.4371	2	4.9221E-06	2373	160511_QHF_FH_JSI10i_1	109.29	67.715			0.9772	1.0563	28.012	4	2	Median	1.8253	1.5221	NaN	1	1	Median	0.90558	1.0944	NaN	1	0	Median	1.0545	1.0195	NaN	1	0	Median	0.74213	0.76991	NaN	1	1	Median	1799800000	924270000	875520000	148860000	51914000	96949000	635540000	323990000	311550000	486310000	230770000	255540000	529080000	317600000	211480000	2022	1040	1906	12091;12092;12093;12094;12095;12096	16506;16507;16508;16509;16510;16511;16512;16513;16514	16510			9	
AGGTKPK	2	Acetyl (K)	699.39154	0.39153897	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0.816					1	1	1					1	2	5.5176	-1.8135	2	0.02845	1813	160513_QHF_FH_JSI12Kac_3	71.342	10.447			0.53759	0.58358	8.1517	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60192	0.5902	NaN	1	0	Median	0.58055	0.62793	10.358	2	0	Median	124560000	81048000	43514000	0	0	0	0	0	0	7500400	4734700	2765700	117060000	76314000	40748000	2023	1099	1907	12097;12098;12099	16515	16515			1	
AGGVGLNLSAASR	0	Unmodified	1171.6309	0.63093439	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			42.405	40.865	2	5.6447E-05	34152	160511_QHF_FH_JSI10i_3	108.9	60.109			1.7337	1.6715	78.404	2	0	Median	3.5252	2.9099	NaN	1	0	Median	0.85259	0.96014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68518000	29660000	38858000	27999000	8978900	19020000	40520000	20681000	19838000	0	0	0	0	0	0	2024	2540	1908	12100;12101	16516;16517;16518	16516			3	
AGHCLLLLR	0	Unmodified	1051.5961	0.59606921	3687	Q8TB03	CXorf38	Uncharacterized protein CXorf38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		52.567	43.377	3	0.003541	23683	160513_QHF_FH_JSI11Kac_6	51.346	28.026			1.0587	1.1432	51.703	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3804	1.6478	NaN	1	1	Median	0.81203	0.79313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18177000	7674400	10503000	3033700	0	3033700	8664400	4202200	4462300	6478800	3472200	3006600	0	0	0	2025	3687	1909	12102;12103;12104	16519;16520;16521	16519			3	
AGHFDKEIVPVLVSTR	1	Acetyl (K)	1808.9785	0.97848328	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.108	69.793	3	0.015898	38238	160513_QHF_FH_JSI11Kac_6	47.754	37.096			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53856000	53856000	0	0	0	0	0	0	0	53856000	53856000	0	0	0	0	2026	4496	1910	12105	16522	16522	3169		1	
AGHGPGPGPGRPKSKNLQPK	3	2 Acetyl (K)	2063.1025	0.10245502	539	O75528	TADA3	Transcriptional adapter 3	yes	yes	2	0	0	3		By MS/MS		By matching	16	0									2		1		1	30.301	21.929	4	0.0089679	12595	160513_QHF_FH_JSI10Kac_6	38.417	36.031			0.41663	0.47185	59.691	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60567	0.71964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.28659	0.30939	NaN	1	0	Median	11753000	7580600	4172800	0	0	0	8047600	4704500	3343100	0	0	0	3705800	2876100	829690	2027	539	1911	12106;12107	16523	16523	279;280		1	
AGHLCTVQFLISK	1	Unmodified	1472.781	0.78096945	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	70.14	60.5	3	0.0020318	32784	160513_QHF_FH_JSI11Kac_6	49.356	33.225			0.95817	0.97885	3.0886	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0138	0.9577	NaN	1	0	Median	0.90555	1.0005	NaN	1	0	Median	18004000	9791800	8212000	0	0	0	0	0	0	10013000	5712700	4300200	7990900	4079100	3911800	2028	3434	1912	12108;12109	16524	16524			1	
AGHLLDLLK	1	Unmodified	978.58622	0.58621603	4520	Q9BXL6	CARD14	Caspase recruitment domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	61.935	60.835	3	0.00017343	52014	160511_QHF_FH_JSI12i_3	65.305	25.304			0.65649	0.76135	60.656	3	0	Median	1.8841	1.5905	NaN	1	0	Median	0.65649	0.76135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48171	0.47759	NaN	1	0	Median	52818000	29942000	22876000	11945000	4018700	7925800	10704000	7338600	3365200	0	0	0	30169000	18584000	11585000	2029	4520	1913	12110;12111;12112	16525;16526	16526			2	
AGHMVPSDQGDMALK	1	Unmodified	1555.7123	0.71229754	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		32.485	32.485	3	0.0025598	28260	160511_QHF_FH_JSI11i_3	46.318	41.427			1.4513	1.3899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4513	1.3899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30575000	16676000	13898000	0	0	0	0	0	0	30575000	16676000	13898000	0	0	0	2030	4836	1914	12113	16527	16527			1	
AGHNVIALVGGATAR	0	Unmodified	1405.779	0.77899561	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.8	4.84			1						5	1	4	1		50.747	44.504	2;3	0.0013565	24432	160513_QHF_FH_JSI10Kac_6	105.65	88.213			0.96779	1.1529	39.436	3	2	Median	NaN	NaN	NaN	0	0	Median	0.96779	1.1529	39.436	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63122000	33112000	30010000	0	0	0	63122000	33112000	30010000	0	0	0	0	0	0	2031	5549	1915	12114;12115;12116;12117;12118;12119	16528;16529;16530;16531;16532;16533	16532			6	
AGHPPAVK	1	Unmodified	775.43407	0.43407249	1732	P51397	DAP	Death-associated protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	1	2	3	3	5.6368	3.6012	2	0.0070234	3194	160511_QHF_FH_JSI11i_3	60.788	17.788			0.9065	1.0331	28.324	9	0	Median	1.3792	1.1763	NaN	1	0	Median	0.75506	0.89568	20.185	2	0	Median	1.0733	1.043	2.7443	3	0	Median	0.55692	0.61163	3.8776	3	0	Median	1848300000	948340000	899910000	156340000	65704000	90635000	334740000	173770000	160970000	627930000	277040000	350890000	729250000	431830000	297420000	2032	1732	1916	12120;12121;12122;12123;12124;12125;12126;12127;12128	16534;16535;16536;16537;16538;16539;16540	16535			7	
AGHQFGVTWR	0	Unmodified	1157.573	0.57302558	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			42.413	33.795	3	0.0006915	18746	160513_QHF_FH_JSI10Kac_6	55.401	49.937			0.9723	1.1115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9723	1.1115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13118000	5854500	7263900	0	0	0	13118000	5854500	7263900	0	0	0	0	0	0	2033	4064	1917	12129	16541	16541			1	
AGHQVMVFVHAR	0	Unmodified	1350.6979	0.69790852	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0		By MS/MS		By matching	16	0									2		1		1	38.573	29.645	4	1.1657E-05	16591	160513_QHF_FH_JSI10Kac_6	67.214	57.892			1.0814	1.2312	8.3432	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0926	1.3061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0703	1.1607	NaN	1	0	Median	29496000	14058000	15438000	0	0	0	25647000	11942000	13705000	0	0	0	3849100	2116000	1733100	2034	3516	1918	12130;12131	16542;16543	16543			2	
AGHYAASIIIR	0	Unmodified	1170.6509	0.65094155	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	45.306	36.123	2;3	4.2142E-08	19897	160513_QHF_FH_JSI11Kac_6	114.4	102.18			1.0479	1.1031	34.73	10	2	Median	1.8436	1.5433	6.8301	3	0	Median	0.83199	0.9778	1.4396	3	1	Plateau	1.45	1.369	14.384	2	0	Median	0.60956	0.66088	10.009	2	1	Median	642680000	289800000	352880000	191720000	67600000	124120000	286560000	147280000	139280000	106910000	42052000	64858000	57491000	32865000	24626000	2035	1856	1919	12132;12133;12134;12135;12136;12137;12138;12139;12140;12141	16544;16545;16546;16547;16548;16549;16550;16551;16552;16553;16554;16555;16556	16545			13	
AGIATHFVDSEK	1	Unmodified	1273.6303	0.63026569	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	30.507	30.474	2	1.8707E-05	26353	160511_QHF_FH_JSI11i_3	130.01	105.78			1.3837	1.347	26.418	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1694	1.1174	NaN	1	1	Median	1.6374	1.6236	NaN	1	1	Median	319820000	107290000	212530000	0	0	0	0	0	0	167000000	55534000	111460000	152820000	51755000	101070000	2036	3075	1920	12142;12143;12144	16557;16558;16559	16557			3	
AGIEDIETLESLSLDQHSK	1	Unmodified	2084.0273	0.027343548	3640	Q8NEN9	PDZD8	PDZ domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	85.041	83.979	3	0.016142	72604	160511_QHF_FH_JSI12i_2	34.476	26.254			0.49866	0.56787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49866	0.56787	NaN	1	1	Median	9935600	6701300	3234400	0	0	0	0	0	0	0	0	0	9935600	6701300	3234400	2037	3640	1921	12145	16560	16560			1	
AGIEGPLLASDVGR	0	Unmodified	1353.7252	0.72522871	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.043	60.389	2	0.0022612	55000	160511_QHF_FH_JSI12i_1	71.632	39.218			0.59506	0.60612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59506	0.60612	NaN	1	1	Median	26906000	18800000	8105900	0	0	0	0	0	0	0	0	0	26906000	18800000	8105900	2038	1141	1922	12146	16561	16561			1	
AGIEINR	0	Unmodified	771.4239	0.42390173	3808	Q8WXE0	CASKIN2	Caskin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							2	2	3	2	17.563	17.012	2	0.0063569	12235	160511_QHF_FH_JSI9i_3	79.454	1.2753			1.0592	1.0912	132.06	7	0	Median	1.5747	1.3506	NaN	1	0	Median	0.16199	0.19837	241.1	2	0	Median	1.2239	1.1818	15.726	3	0	Median	0.75078	0.84735	NaN	1	0	Median	827510000	437750000	389760000	111080000	40805000	70270000	216310000	150410000	65909000	435510000	211380000	224130000	64607000	35157000	29450000	2039	3808	1923	12147;12148;12149;12150;12151;12152;12153;12154;12155	16562;16563;16564;16565;16566	16563			5	
AGIFQPHVR	0	Unmodified	1023.5614	0.56139826	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			29.442	28.08	3	9.5901E-05	23260	160511_QHF_FH_JSI10i_3	69.825	33.429			1.1027	1.0693	12.898	2	0	Median	1.4397	1.1714	NaN	1	0	Median	0.84456	0.9761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133570000	64858000	68714000	62840000	26677000	36163000	70732000	38182000	32551000	0	0	0	0	0	0	2040	558	1924	12156;12157	16567;16568	16567			2	
AGIFQSVK	1	Unmodified	848.4756	0.47560295	938	P09669	COX6C	Cytochrome c oxidase subunit 6C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	4	3	3	2	37.512	33.675	2	0.00030189	18617	160513_QHF_FH_JSI11Kac_6	116.37	64.584			1.0654	1.0771	32.789	11	2	Median	1.58	1.3343	16.076	3	1	Median	0.8497	1.0137	3.1478	3	0	Median	1.1217	1.1157	29.578	3	1	Median	0.61904	0.64585	3.5239	2	0	Median	4737000000	2304200000	2432800000	866110000	328230000	537880000	1376300000	665210000	711050000	1120200000	528080000	592130000	1374400000	782650000	591730000	2041	938	1925	12158;12159;12160;12161;12162;12163;12164;12165;12166;12167;12168;12169	16569;16570;16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588;16589;16590;16591	16574			23	
AGIHSSNVGVR	0	Unmodified	1095.5785	0.57850489	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				10.967	10.256	3	0.037947	7811	160511_QHF_FH_JSI9i_3	34.773	18.102			2.1534	1.7351	NaN	1	1	Median	2.1534	1.7351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124550000	38205000	86342000	124550000	38205000	86342000	0	0	0	0	0	0	0	0	0	2042	3274	1926	12170	16592	16592			1	
AGIIASAR	0	Unmodified	757.44464	0.44463717	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	6.66	3	4	4					4	4	4	5	5	5	18.332	14.471	2	2.8685E-32	9130	160513_QHF_FH_JSI11Kac_5	189.62	69.129			0.9358	0.9977	30.897	19	0	Median	1.6644	1.4401	6.3151	4	0	Median	0.78839	1.0019	11.093	5	0	Linear	1.0013	0.9977	9.1931	5	0	Median	0.5874	0.62328	8.8583	5	0	Median	20750000000	9953300000	10797000000	6675200000	2438600000	4236600000	6552900000	3397900000	3155100000	4791600000	2402800000	2388700000	2730300000	1714000000	1016300000	2043	1033	1927	12171;12172;12173;12174;12175;12176;12177;12178;12179;12180;12181;12182;12183;12184;12185;12186;12187;12188;12189	16593;16594;16595;16596;16597;16598;16599;16600;16601;16602;16603;16604;16605;16606;16607;16608;16609;16610;16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621;16622;16623	16612			31	
AGIICQLNAR	0	Unmodified	1114.5917	0.59171211	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			41.16	39.639	2	0.000412	32299	160511_QHF_FH_JSI9i_3	89.142	56.788			1.3617	1.3337	43.808	2	2	Median	2.2027	1.818	NaN	1	1	Median	0.84184	0.97843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99233000	48630000	50602000	41270000	14739000	26530000	57963000	33891000	24072000	0	0	0	0	0	0	2044	1409	1928	12190;12191	16624;16625	16625			2	
AGIIQDTWHK	1	Unmodified	1167.6037	0.60365701	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	2	2	2	36.331	35.663	2;3	1.2578E-08	30322	160511_QHF_FH_JSI12i_3	177.36	113.88			1.0311	0.96556	63.264	7	4	Median	4.1105	3.4516	NaN	1	1	Median	1.5491	1.7732	19.362	2	1	Median	1.0256	0.95534	1.5056	2	1	Median	0.63672	0.63995	22.407	2	1	Median	954570000	414550000	540010000	19224000	3736900	15488000	144380000	50650000	93731000	345910000	117280000	228630000	445050000	242890000	202160000	2045	5213	1929	12192;12193;12194;12195;12196;12197;12198;12199	16626;16627;16628;16629;16630;16631;16632;16633;16634	16634			9	
AGIISTVEVLK	1	Unmodified	1128.6754	0.67542497	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.53	1	4	2				1	4	2	3	2	5	4	72.224	66.873	2	3.4532E-19	59693	160511_QHF_FH_JSI9i_2	168.8	158.38			1.1876	1.1308	25.662	14	0	Median	1.6322	1.399	17.558	3	0	Median	0.873	1.0538	4.1723	2	0	Median	1.2217	1.2029	6.1769	5	0	Median	0.64889	0.73203	4.8856	4	0	Median	1726100000	923110000	802960000	211320000	88384000	122940000	345260000	199610000	145650000	614700000	267060000	347640000	554800000	368050000	186740000	2046	1862	1930	12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212;12213	16635;16636;16637;16638;16639;16640;16641;16642;16643;16644;16645;16646;16647;16648	16641			14	
AGILFEDIFDVK	1	Acetyl (Protein N-term)	1407.7286	0.72858275	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	3	2	104.09	104.01	2	1.3647E-06	94795	160511_QHF_FH_JSI10i_1	85.377	71.171			0.98715	1.0124	7.3662	9	0	Median	1.1892	1.0395	10.351	2	0	Median	0.8438	1.0058	0.93561	2	0	Median	1.0251	1.0339	6.7583	3	0	Median	0.91474	0.97961	14.091	2	0	Median	490800000	254360000	236430000	78407000	37069000	41338000	148610000	79997000	68612000	164560000	82219000	82344000	99217000	55077000	44140000	2047	1771	1931	12214;12215;12216;12217;12218;12219;12220;12221;12222	16649;16650;16651;16652;16653;16654;16655;16656;16657;16658;16659;16660;16661	16655			13	
AGILTTLNAR	0	Unmodified	1028.5978	0.59784335	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.25	6.26			2					1	1	1	3			52.711	47.126	2	0.00029232	39345	160511_QHF_FH_JSI10i_3	79.059	35.935			0.79209	0.9162	17.806	4	0	Median	1.593	1.2756	NaN	1	0	Median	0.7821	0.89506	4.0362	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259740000	119800000	139940000	130200000	46629000	83574000	129530000	73166000	56369000	0	0	0	0	0	0	2048	1411	1932	12223;12224;12225;12226	16662;16663;16664;16665	16663			4	
AGIMPFLK	1	Unmodified	875.4939	0.49389555	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.623	68.326	2	0.016568	59142	160511_QHF_FH_JSI12i_3	59.205	38.923			1.428	1.4084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.428	1.4084	NaN	1	1	Median	45773000	21772000	24001000	0	0	0	0	0	0	0	0	0	45773000	21772000	24001000	2049	3430	1933	12227	16666	16666			1	
AGINQNMDAVTEELQAK	1	Unmodified	1830.8782	0.87817689	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	66.011	65.388	2	2.6349E-10	59570	160511_QHF_FH_JSI12i_1	158.81	135.44			0.67784	0.69368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67784	0.69368	NaN	1	1	Median	26526000	15797000	10729000	0	0	0	0	0	0	0	0	0	26526000	15797000	10729000	2050	5458	1934	12228	16667	16667			1	
AGIPTSSVFALHFTEPPISAQLLAFLR	0	Unmodified	2882.5695	0.56945034	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.148	92.427	3	6.6222E-29	53965	160513_QHF_FH_JSI10Kac_6	131.57	110.44			0.76509	0.9114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76509	0.9114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	255720000	142100000	113620000	0	0	0	255720000	142100000	113620000	0	0	0	0	0	0	2051	3312	1935	12229	16668;16669	16668			2	
AGIPVYAWK	1	Unmodified	1003.5491	0.54910224	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.25	2	5	4					2	3	4	4	4	4	64.061	60.262	2	8.6842E-06	51616	160511_QHF_FH_JSI12i_2	107.43	40.747			0.97228	1.0097	25.054	15	1	Median	1.5283	1.2761	3.5822	4	0	Median	0.86478	1.0172	7.4102	4	0	Median	1.0284	0.97459	9.5838	4	0	Median	0.71035	0.75637	23.276	3	1	Plateau	5808900000	3204400000	2604500000	864900000	368270000	496620000	1330800000	729840000	600970000	1976200000	1101900000	874390000	1637000000	1004500000	632540000	2052	1234	1936	12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245	16670;16671;16672;16673;16674;16675;16676;16677;16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689;16690	16673			21	
AGIQQVYTR	0	Unmodified	1034.5509	0.55089316	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	25.211	24.392	2	1.2954E-16	20454	160511_QHF_FH_JSI11i_2	157.68	98.472			0.59244	0.71198	38.255	3	0	Median	NaN	NaN	NaN	0	0	Median	0.7618	0.91158	34.949	2	0	Median	NaN	NaN	NaN	0	0	Median	0.48316	0.54971	NaN	1	0	Median	199940000	127220000	72721000	0	0	0	132110000	82173000	49938000	0	0	0	67831000	45049000	22782000	2053	2453	1937	12246;12247;12248;12249	16691;16692;16693;16694	16693			3	
AGIQTEEHPNPGK	1	Unmodified	1376.6684	0.66844211	3719	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				13.121	12.456	3	0.0098528	10091	160511_QHF_FH_JSI9i_2	40.676	31.388			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2054	3719	1938	12250	16695	16695			1	
AGISFIIK	1	Unmodified	847.51674	0.51673948	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.69		4	4						6	4	3	4	3	66.549	63.354	2	0.00063796	54378	160511_QHF_FH_JSI12i_3	101.64	72.305			0.79107	0.93177	26.553	10	3	Median	1.3379	1.1505	8.3553	3	1	Median	0.77882	0.93483	8.4469	3	1	Median	0.82628	0.78186	24.344	2	1	Median	0.53645	0.5749	9.4793	2	0	Median	1789200000	1018900000	770330000	341570000	162630000	178940000	443510000	272460000	171050000	412060000	231860000	180190000	592090000	351950000	240140000	2055	2087	1939	12251;12252;12253;12254;12255;12256;12257;12258;12259;12260;12261;12262;12263;12264	16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709;16710;16711;16712;16713;16714;16715	16712			20	
AGITAAINLAK	1	Unmodified	1041.6182	0.61824444	2994	Q5VW38	GPR107	Protein GPR107	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.47	103.48	2	0.015793	90213	160511_QHF_FH_JSI12i_3	50.607	7.3604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11432000	11432000	0	0	0	0	0	0	0	0	0	0	11432000	11432000	0	2056	2994	1940	12265	16716	16716			1	
AGITTTLNSR	0	Unmodified	1032.5564	0.55637247	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		4	4	4	5	28.471	24.443	2	1.3981E-05	20260	160511_QHF_FH_JSI10i_3	101.46	78.72			0.84402	0.91909	30.871	16	2	Median	1.7719	1.4705	18.833	4	0	Median	0.75918	0.87976	4.9924	4	0	Median	0.95764	0.94727	17.488	3	1	Median	0.60263	0.67037	23.949	5	1	Median	1585800000	861770000	724060000	353900000	150090000	203800000	524150000	303030000	221120000	196380000	95835000	100550000	511400000	312810000	198580000	2057	1410	1941	12266;12267;12268;12269;12270;12271;12272;12273;12274;12275;12276;12277;12278;12279;12280;12281;12282	16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732	16719			16	
AGITWLSLQWSK	1	Unmodified	1388.7452	0.74523587	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	2	2	1		91.369	86.381	2	7.9451E-14	44175	160513_QHF_FH_JSI11Kac_6	165.18	21.216			1.0659	1.0115	30.862	5	2	Median	1.0252	0.86941	21.402	2	1	Median	0.77987	0.90082	46.484	2	0	Median	1.3671	1.299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	611980000	294540000	317430000	182770000	97901000	84870000	195380000	96850000	98532000	233820000	99793000	134030000	0	0	0	2058	5520	1942	12283;12284;12285;12286;12287	16733;16734;16735;16736;16737;16738	16734			6	
AGIVTSLQAR	0	Unmodified	1014.5822	0.58219329	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.07		3	3					2	1	2	3	3	1	38.803	34.866	2	0.0013175	28530	160511_QHF_FH_JSI9i_3	76.827	34.718			0.7573	0.81527	36.067	9	2	Median	1.5416	1.2979	10.878	2	0	Median	0.68832	0.81527	9.9659	3	1	Median	0.77123	0.75776	30.748	3	1	Median	0.46217	0.4798	NaN	1	0	Median	982440000	526070000	456370000	379170000	150990000	228180000	403480000	245580000	157900000	84320000	56465000	27855000	115470000	73037000	42430000	2059	1674	1943	12288;12289;12290;12291;12292;12293;12294;12295;12296	16739;16740;16741;16742;16743;16744;16745;16746	16742			7	
AGKDSGKAK	3	2 Acetyl (K)	944.49271	0.49270958	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	2	0	0	2	By matching		By MS/MS	By MS/MS	13	0.632					1	3	1			1		2	2	9.8488	0.42916	2	0.005488	2815	160513_QHF_FH_JSI12Kac_3	90.108	37.392			0.85939	0.91811	40.694	5	0	Median	2.3785	1.8849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9506	0.92688	12.284	2	0	Median	0.69895	0.75468	27.722	2	0	Median	216500000	114510000	101990000	31450000	7153200	24297000	0	0	0	94978000	44969000	50010000	90072000	62386000	27685000	2060	945	1944	12297;12298;12299;12300;12301	16747;16748;16749;16750;16751	16751	710;711;712		5	
AGKDSGKAKTK	4	3 Acetyl (K)	1215.6459	0.64591575	945	P0C0S5	H2AFZ	Histone H2A.Z	yes	yes	3	0	0	3		By MS/MS		By MS/MS	12	0					2						1		1	17.278	10.129	2	0.0044988	6091	160513_QHF_FH_JSI12Kac_2	69.979	45.125			1.291	1.4433	63.425	2	0	Median	NaN	NaN	NaN	0	0	Median	1.9403	2.2601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85904	0.92167	NaN	1	0	Median	6392200	3128100	3264100	0	0	0	3471200	1166200	2305000	0	0	0	2921000	1961900	959140	2061	945	1945	12302;12303	16752;16753	16753	710;711;712		2	
AGKFPSLLTHNENMVAK	2	Unmodified	1855.9615	0.96145301	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		51.273	50.221	3;4	1.1509E-06	41301	160511_QHF_FH_JSI9i_3	106.28	92.443			0.8864	0.8292	34.401	6	3	Median	0.69921	0.57279	0.90264	2	0	Median	1.0679	1.198	4.648	2	1	Median	0.8864	0.8292	21.223	2	2	Median	NaN	NaN	NaN	0	0	Median	500800000	273330000	227470000	192490000	105750000	86742000	136340000	70048000	66292000	171970000	97537000	74435000	0	0	0	2062	2036	1946	12304;12305;12306;12307;12308;12309	16754;16755;16756;16757;16758;16759;16760	16760			7	
AGKFPSLLTHNENMVAK	2	Acetyl (K);Oxidation (M)	1913.9669	0.96693232	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		66.409	56.77	3	0.00039323	30730	160513_QHF_FH_JSI11Kac_6	122.14	88.832			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16146000	16146000	0	0	0	0	0	0	0	16146000	16146000	0	0	0	0	2063	2036	1946	12310	16761	16761	2079	1694	1	
AGKFPSLLTHNENMVAK	2	Acetyl (K)	1897.972	0.9720177	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	73.183	64.242	3	8.6119E-16	34798	160513_QHF_FH_JSI11Kac_6	182.17	165.23			0.11739	0.14018	248.55	3	3	Median	NaN	NaN	NaN	0	0	Median	0.11739	0.14018	NaN	1	1	Median	0.85427	0.8234	320.4	2	2	Median	NaN	NaN	NaN	0	0	Median	155640000	126080000	29562000	0	0	0	25588000	24666000	921630	110530000	81891000	28641000	19523000	19523000	0	2064	2036	1946	12311;12312;12313;12314	16762;16763;16764;16765	16763	2079		4	
AGKGEVTFEDVK	2	Unmodified	1278.6456	0.6455814	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	25.973	25.941	2	0.015287	21659	160511_QHF_FH_JSI12i_3	62.303	25.609			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2065	5345	1947	12315	16766	16766			1	
AGKLDPHLVLDQLR	1	Unmodified	1573.894	0.89402537	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	66.965	66.075	3;4	9.7715E-05	58563	160511_QHF_FH_JSI11i_3	75.669	63.286			1.2286	1.1427	28.569	7	0	Median	1.8556	1.4922	6.8988	2	0	Median	0.90655	1.0422	0.083512	2	0	Median	1.548	1.4395	32.648	2	0	Median	0.77053	0.78632	NaN	1	0	Median	511580000	211120000	300460000	143690000	46758000	96927000	172490000	87914000	84573000	179290000	68109000	111180000	16126000	8337500	7788700	2066	1436;1437	1948	12316;12317;12318;12319;12320;12321;12322	16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778	16769			12	
AGKNQGDPK	2	Acetyl (K)	955.47231	0.47230849	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	5.7318	-1.4985	2	0.00066458	1904	160513_QHF_FH_JSI10Kac_3	96.253	51.806			0.83547	0.85722	23.205	5	0	Median	NaN	NaN	NaN	0	0	Median	0.86147	1.0261	3.9189	2	0	Median	0.86759	0.85722	NaN	1	0	Median	0.59984	0.64955	5.3358	2	0	Median	48694000	27361000	21333000	0	0	0	20154000	10866000	9287800	8299300	4496500	3802900	20240000	11998000	8242300	2067	1154	1949	12323;12324;12325;12326;12327	16779;16780;16781;16782;16783;16784;16785	16784	1010		7	
AGKPHLVLGLLWQIIK	2	Unmodified	1785.1029	0.10289593	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	92.879	84.793	3	5.6787E-32	47313	160513_QHF_FH_JSI11Kac_6	160.27	133.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2068	1039	1950	12328;12329;12330;12331;12332;12333	16786;16787;16788;16789;16790;16791	16786			6	
AGKPVICATQMLESMIK	2	2 Oxidation (M)	1907.9519	0.95187588	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			8							2	3	2	1	56.804	55.885	2;3	1.2743E-11	46994	160511_QHF_FH_JSI10i_3	108.34	92.155			0.901	0.8358	32.264	7	0	Median	0.99089	0.8052	49.561	2	0	Median	1.0762	1.2377	5.5733	2	0	Median	0.78681	0.73372	18.422	2	0	Median	0.72945	0.74571	NaN	1	0	Median	913920000	499920000	414000000	265290000	136720000	128570000	321380000	171950000	149430000	257830000	147990000	109840000	69421000	43263000	26158000	2069	1055	1951	12334;12335;12336;12337;12338;12339;12340;12341	16792;16793;16794;16795;16796;16797;16798;16799;16800	16797		676;677	9	
AGKPVICATQMLESMIK	2	Oxidation (M)	1891.957	0.95696126	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			22							5	5	8	4	71.548	70.758	2;3	8.0889E-08	62292	160511_QHF_FH_JSI10i_3	134.44	128.9			0.89362	1.0142	21.509	20	5	Median	1.4689	1.1753	9.8573	5	0	Median	0.90475	1.0551	4.3327	5	0	Median	0.8608	0.82181	17.367	6	3	Median	0.73908	0.73805	8.097	4	2	Median	3306500000	1721900000	1584600000	642460000	275030000	367430000	1077200000	567750000	509470000	1078200000	598570000	479620000	508670000	280550000	228120000	2070	1055	1951	12342;12343;12344;12345;12346;12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363	16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836	16819		676;677	36	
AGKPVICATQMLESMIK	2	Unmodified	1875.962	0.96204664	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.11		1	12						3	5	5	3	3	92.498	90.187	2;3	8.863E-97	82915	160511_QHF_FH_JSI11i_3	266.15	236.85			0.91336	0.82476	36.374	15	7	Median	1.884	1.5207	46.907	5	3	Median	1.12	1.2795	23.459	4	3	Linear	0.86864	0.82476	12.008	3	1	Plateau	0.72534	0.74833	35.404	3	0	Median	15108000000	7352800000	7755600000	2362200000	1005000000	1357200000	4336300000	1952400000	2383900000	4697500000	2281900000	2415500000	3712400000	2113500000	1598900000	2071	1055	1951	12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379	16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847;16848;16849;16850;16851;16852;16853;16854;16855;16856;16857;16858;16859;16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870;16871;16872;16873;16874;16875;16876;16877;16878;16879;16880;16881;16882;16883;16884	16840			48	
AGKSSLFK	2	Acetyl (K);Acetyl (Protein N-term)	920.49673	0.49673232	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	1	1	0	1		By MS/MS		By MS/MS	12	0					3						1		2	64.679	55.295	2	0.011105	23657	160513_QHF_FH_JSI10Kac_2	33.797	21.892			0.66646	0.74078	51.299	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9422	1.0647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47142	0.51541	NaN	1	0	Median	3962300	2003700	1958500	0	0	0	1797100	671270	1125800	0	0	0	2165200	1332500	832740	2072	1729	1952	12380;12381;12382	16885;16886;16887	16885	1745		3	
AGKWEVPLPK	2	Unmodified	1123.639	0.63897988	699	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	50.089	49.853	3	0.029468	42428	160511_QHF_FH_JSI12i_3	35.71	26.756			3.8554	3.8935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8554	3.8935	NaN	1	1	Median	329540000	60136000	269400000	0	0	0	0	0	0	0	0	0	329540000	60136000	269400000	2073	699	1953	12383	16888	16888			1	
AGLAADK	1	Unmodified	644.34934	0.3493398	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.2	5.56	1	2				2				1	1	2	1	5.6476	2.4404	2	0.013827	2852	160511_QHF_FH_JSI9i_1	68.915	20.999			1.0948	1.13	12.333	5	1	Median	1.3974	1.1722	NaN	1	1	Median	0.74184	0.88617	NaN	1	0	Median	1.157	1.1594	6.2512	2	0	Median	1.0342	1.13	NaN	1	0	Median	2417000000	1070800000	1346200000	1963000000	846590000	1116400000	27215000	14090000	13124000	237240000	113380000	123870000	189500000	96718000	92780000	2074	2485	1954	12384;12385;12386;12387;12388	16889;16890;16891;16892	16891			4	
AGLAADKK	2	Unmodified	772.4443	0.44430282	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.1924	5.288	2	0.015371	2831	160511_QHF_FH_JSI12i_3	67.169	9.8885			0.29478	0.30066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29478	0.30066	NaN	1	1	Median	198510000	156310000	42199000	0	0	0	0	0	0	0	0	0	198510000	156310000	42199000	2075	2485	1955	12389	16893	16893			1	
AGLAMPGPPLGPVLGQR	0	Unmodified	1629.9025	0.90248157	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	3	3	1	87.09	86.58	2;3	1.0515E-10	77268	160511_QHF_FH_JSI11i_3	145.34	135.68			0.95479	0.92197	23.51	8	3	Median	1.4484	1.2226	0.96271	2	1	Median	0.74038	0.87487	3.1519	2	1	Median	0.99898	0.9502	5.7156	3	1	Plateau	0.5912	0.5806	NaN	1	0	Median	245480000	134690000	110790000	48855000	19132000	29723000	61359000	37433000	23926000	89706000	45039000	44668000	45561000	33086000	12475000	2076	5575	1956	12390;12391;12392;12393;12394;12395;12396;12397;12398;12399	16894;16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907;16908	16895			15	
AGLAPLEVR	0	Unmodified	924.53927	0.53926584	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	6.32	5	3					1	3		3	2	5	2	48.994	44.525	2	0.00041219	38280	160511_QHF_FH_JSI11i_2	81.191	38.067			0.90149	0.90438	20.358	8	5	Median	1.112	0.93721	6.2428	2	0	Median	0.78109	0.91209	NaN	1	1	Median	0.91695	0.94995	7.6541	3	2	Median	0.57223	0.63433	20.738	2	2	Median	1225700000	644630000	581050000	205610000	91902000	113710000	148030000	73848000	74184000	549570000	296210000	253360000	322470000	182670000	139800000	2077	512	1957	12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411	16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920	16918			12	
AGLDEAK	1	Unmodified	702.35482	0.35481911	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		8.2432	8.0667	2	0.013252	5567	160511_QHF_FH_JSI9i_1	58.917	15.103			1.5334	1.6548	8.5053	2	2	Median	NaN	NaN	NaN	0	0	Median	1.49	1.7574	NaN	1	1	Median	1.5781	1.5582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	188660000	89638000	99025000	0	0	0	96209000	44063000	52147000	92454000	45575000	46879000	0	0	0	2078	3539	1958	12412;12413;12414	16921;16922;16923	16923			3	
AGLELLSDQGYR	0	Acetyl (Protein N-term)	1362.6779	0.67794416	4895	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.719	84.257	2	2.054E-06	76879	160511_QHF_FH_JSI11i_1	123.86	101.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2079	4895	1959	12415;12416;12417;12418	16924;16925;16926;16927;16928;16929	16925			6	
AGLESGAEPGDGDSDTTK	1	Unmodified	1705.7279	0.72786706	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.366	19.857	2	1.4679E-17	17280	160511_QHF_FH_JSI12i_1	169.04	154.88			0.99665	0.96174	10.918	4	0	Median	1.1878	0.97118	NaN	1	0	Median	0.81852	0.95239	NaN	1	0	Median	1.1788	1.1312	NaN	1	0	Median	0.84262	0.8695	NaN	1	0	Median	201000000	98659000	102340000	47777000	23689000	24088000	40003000	20206000	19797000	48511000	19476000	29035000	64712000	35288000	29424000	2080	453	1960	12419;12420;12421;12422	16930;16931;16932;16933;16934;16935;16936	16933			7	
AGLGHPAAFGR	0	Acetyl (Protein N-term)	1094.5621	0.56212655	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	1	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	43.717	38.665	2	3.3549E-07	33572	160511_QHF_FH_JSI11i_2	119.27	95.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2081	603	1961	12423;12424	16937;16938	16937			2	
AGLGSGLSLSGLVHPELSR	0	Unmodified	1849.0058	0.005760665	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							3	2	1	1	83.027	82.189	2;3	5.0578E-18	68868	160511_QHF_FH_JSI10i_3	181.94	167.25			1.2003	1.1601	18.941	7	1	Median	1.4846	1.2285	24.117	3	0	Median	0.89913	1.0347	16.181	2	1	Median	1.2003	1.1515	NaN	1	0	Median	1.4123	1.4308	NaN	1	0	Median	984640000	475380000	509260000	383520000	164970000	218560000	303030000	166820000	136200000	178540000	83976000	94569000	119550000	59616000	59933000	2082	1675	1962	12425;12426;12427;12428;12429;12430;12431	16939;16940;16941;16942;16943;16944;16945;16946	16942			8	
AGLITNFNEPINQIATQIAVLIAK	1	Unmodified	2551.4374	0.43737353	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.2	5.42		2	2						1	2	1		2	103.38	101.53	2;3	4.5701E-38	53337	160513_QHF_FH_JSI9Kac_6	213.72	200.92			0.87739	1.0704	39.106	5	1	Median	1.7732	1.511	14.591	2	1	Median	0.87739	1.0704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6811	0.70232	4.808	2	0	Median	352440000	158050000	194380000	180110000	60765000	119340000	21161000	10372000	10789000	0	0	0	151170000	86917000	64255000	2083	5323	1963	12432;12433;12434;12435;12436	16947;16948;16949;16950	16947			4	
AGLLAGDR	0	Unmodified	771.4239	0.42390173	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	17.367	16.769	2	0.0025673	12441	160511_QHF_FH_JSI10i_3	79.116	18.328			0.96298	0.9297	27.422	4	0	Median	1.0298	0.82608	NaN	1	0	Median	0.90051	1.0463	NaN	1	0	Median	1.0592	1.0759	NaN	1	0	Median	0.60381	0.59526	NaN	1	0	Median	874520000	465690000	408830000	152520000	77179000	75342000	337240000	173510000	163730000	164950000	76083000	88867000	219810000	138920000	80884000	2084	198	1964	12437;12438;12439;12440	16951;16952;16953;16954	16951			4	
AGLLAGDRLVEVNGENVEK	1	Unmodified	1982.0433	0.043268383	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	3	1		60.13	59.173	3	1.2303E-08	52470	160511_QHF_FH_JSI11i_3	111.66	93.958			1.0385	1.1885	16.035	5	2	Median	1.8359	1.4715	NaN	1	0	Median	0.93683	1.1009	13.947	3	2	Median	1.2718	1.1885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	578270000	276540000	301730000	130410000	51549000	78862000	330480000	175530000	154950000	117380000	49467000	67913000	0	0	0	2085	198	1965	12441;12442;12443;12444;12445	16955;16956;16957;16958;16959;16960	16955			6	
AGLLALSALTFAGLCYFNYHDVGICK	1	Unmodified	2873.4244	0.42444236	169	O14521	SDHD	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		98.367	90.801	3	4.5566E-24	53970	160513_QHF_FH_JSI10Kac_6	181.38	160.36			1.0639	1.1469	30.235	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1953	1.4202	NaN	1	1	Median	0.94692	0.9261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252260000	167310000	84947000	0	0	0	162310000	110670000	51637000	89947000	56637000	33310000	0	0	0	2086	169	1966	12446;12447	16961;16962	16962			2	
AGLLATLQDTQK	1	Unmodified	1257.6929	0.69286595	3715	Q8TD16	BICD2	Protein bicaudal D homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	57.863	57.266	2	1.8973E-07	50670	160511_QHF_FH_JSI11i_3	167.1	140.66			1.1082	0.82348	45.041	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1082	1.2849	NaN	1	1	Median	1.2682	1.1922	NaN	1	0	Median	0.5645	0.56881	NaN	1	0	Median	199870000	118480000	81395000	0	0	0	42589000	22697000	19892000	74575000	39974000	34601000	82711000	55809000	26902000	2087	3715	1967	12448;12449;12450	16963;16964;16965;16966;16967	16963			5	
AGLLEPEVFHLNPAK	1	Unmodified	1633.8828	0.88279198	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	3	2	75.523	74.792	3	1.983E-21	66519	160511_QHF_FH_JSI11i_3	130.24	117.12			1.0019	1.0785	36.292	7	3	Median	1.8255	1.5585	NaN	1	0	Median	1.1593	1.405	37.404	2	2	Median	1.1076	1.0768	21.467	2	1	Median	0.66642	0.72079	7.2058	2	0	Median	679360000	331570000	347790000	96122000	35297000	60826000	120440000	58306000	62135000	230860000	99687000	131180000	231930000	138280000	93651000	2088	1240	1968	12451;12452;12453;12454;12455;12456;12457;12458	16968;16969;16970;16971;16972;16973;16974;16975;16976;16977;16978	16969			11	
AGLLFIFNFHPSK	1	Unmodified	1489.8082	0.80817048	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.89			4	1					8	3	3	4	3	93.299	87.509	2;3	3.5998E-41	46818	160513_QHF_FH_JSI10Kac_6	196.38	165.49			0.80025	0.95728	25.451	13	1	Median	1.25	1.1014	11.75	3	0	Median	0.79439	0.93611	1.5895	3	0	Plateau	1.1091	1.0402	43.255	4	1	Median	0.72013	0.75881	2.0004	3	0	Median	10023000000	4715200000	5307600000	2863500000	1186000000	1677500000	3552400000	1919100000	1633300000	2633100000	1127100000	1506000000	973950000	483090000	490860000	2089	2216	1969	12459;12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471	16979;16980;16981;16982;16983;16984;16985;16986;16987;16988;16989;16990;16991;16992;16993;16994;16995;16996	16994			18	
AGLLGQPR	0	Unmodified	810.47119	0.47118627	5661	Q9Y5J7	TIMM9	Mitochondrial import inner membrane translocase subunit Tim9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	22.581	22.009	2	0.0030718	18800	160511_QHF_FH_JSI9i_2	75.311	37.665			1.4137	1.3227	35.147	6	0	Median	1.6046	1.373	NaN	1	0	Median	1.2392	1.4868	29.213	2	0	Median	1.5072	1.462	19.434	2	0	Median	0.67205	0.67502	NaN	1	0	Median	638930000	275280000	363650000	120660000	43819000	76844000	179240000	77363000	101870000	232590000	91105000	141480000	106440000	62995000	43444000	2090	5661	1970	12472;12473;12474;12475;12476;12477	16997;16998;16999;17000;17001	16999			5	
AGLLHNILPSQSTDLHHSVGTELLSLVYK	1	Unmodified	3141.6822	0.68224827	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			16						4	10	9	1		101.17	99.575	3;4;5	1.5571E-21	46988	160513_QHF_FH_JSI10Kac_6	156.27	137.55			1.2728	1.163	23.276	18	6	Median	1.4556	1.2167	21.196	9	3	Median	0.82617	0.96607	23.424	8	2	Median	1.2254	1.2204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1052500000	489860000	562690000	353090000	133580000	219510000	661930000	343030000	318890000	37528000	13243000	24285000	0	0	0	2091	2094	1971	12478;12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490;12491;12492;12493;12494;12495;12496;12497	17002;17003;17004;17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034	17034			33	
AGLLQPPVR	0	Unmodified	949.5709	0.57090032	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	3	1	2	44.246	43.683	2	0.0001812	36742	160511_QHF_FH_JSI10i_3	91.906	66.908			0.96347	1.0321	36.42	4	0	Median	1.8752	1.6261	NaN	1	0	Median	0.8374	1.033	NaN	1	0	Median	1.1085	1.0312	NaN	1	0	Median	0.6621	0.66643	NaN	1	0	Median	287640000	142130000	145510000	42646000	18419000	24227000	46742000	23859000	22883000	103560000	46228000	57328000	94693000	53620000	41073000	2092	3438	1972	12498;12499;12500;12501;12502;12503;12504;12505	17035;17036;17037;17038;17039;17040;17041;17042;17043	17039			9	
AGLLQVYIHTQK	1	Unmodified	1369.7718	0.77178497	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	5	3	3	2	61.782	55.068	2;3	4.2015E-24	30210	160513_QHF_FH_JSI10Kac_6	182.64	147.41			1.0282	0.92789	29.696	13	2	Median	1.3259	1.1191	32.74	5	2	Median	0.78467	0.91043	10.753	3	0	Median	1.1153	1.0779	11.52	3	0	Median	0.60794	0.65759	4.9328	2	0	Median	1272800000	620720000	652040000	215490000	89137000	126350000	501540000	238240000	263290000	390980000	200710000	190270000	164750000	92626000	72121000	2093	3916	1973	12506;12507;12508;12509;12510;12511;12512;12513;12514;12515;12516;12517;12518	17044;17045;17046;17047;17048;17049;17050;17051;17052;17053;17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064	17063			21	
AGLLSDK	1	Unmodified	702.3912	0.39120462	3507	Q8N1S5	SLC39A11	Zinc transporter ZIP11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.421	12.998	2	0.031164	10513	160511_QHF_FH_JSI10i_1	53.554	17.369			0.96011	0.96541	4.41	4	2	Median	1.1301	0.94222	NaN	1	0	Median	0.84219	0.98916	NaN	1	1	Median	0.9629	0.93047	NaN	1	1	Median	0.95733	1.0235	NaN	1	0	Median	1133300000	593720000	539560000	211780000	90916000	120870000	357200000	207370000	149830000	303080000	158580000	144500000	261210000	136850000	124360000	2094	3507	1974	12519;12520;12521;12522	17065;17066;17067	17067			3	
AGLLSQAK	1	Unmodified	786.45995	0.45995289	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0.894	2	1	2							1	1	2	1	18.698	18.448	2	0.03298	14849	160511_QHF_FH_JSI12i_3	41.025	11.876			0.83554	0.77569	31.39	5	0	Median	0.80404	0.68394	NaN	1	0	Median	1.0639	1.2374	NaN	1	0	Median	0.91626	0.86394	15.238	2	0	Median	0.5285	0.54678	NaN	1	0	Median	437980000	230690000	207290000	55119000	25606000	29513000	49847000	25515000	24333000	148730000	70740000	77989000	184280000	108830000	75455000	2095	2921	1975	12523;12524;12525;12526;12527	17068;17069;17070	17069			3	
AGLLVLAVLSDGAGDHIR	0	Unmodified	1775.9894	0.98938232	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.511	82.793	3	2.5412E-06	46780	160513_QHF_FH_JSI10Kac_6	99.569	88.464			0.7656	0.91915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7656	0.91915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	304660000	163240000	141430000	0	0	0	304660000	163240000	141430000	0	0	0	0	0	0	2096	3741	1976	12528	17071	17071			1	
AGLNCSTENMPIK	1	Unmodified	1433.6643	0.66428471	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	40.392	39.676	2	0.00015854	35592	160511_QHF_FH_JSI11i_1	107.03	90.888			0.86762	0.87654	5.4378	3	3	Plateau	1.0572	0.87654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86762	0.85432	NaN	1	1	Median	0.90156	0.9483	NaN	1	1	Median	397080000	186970000	210100000	76592000	31561000	45031000	0	0	0	175370000	83457000	91916000	145110000	71954000	73157000	2097	832	1977	12529;12530;12531	17072;17073;17074	17072			3	
AGLNEMVEYITHSR	0	Unmodified	1618.7773	0.77734063	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		80.708	80.049	3	9.8017E-05	71409	160511_QHF_FH_JSI11i_3	60.918	56.197			0.84567	0.8708	4.1455	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76149	0.8967	NaN	1	0	Median	0.93916	0.84564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51567000	27743000	23824000	0	0	0	17083000	10425000	6658500	34484000	17318000	17166000	0	0	0	2098	2570	1978	12532;12533	17075;17076;17077	17075			3	
AGLNQEWGLIR	0	Unmodified	1255.6673	0.6673199	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.654	64.509	2	0.0003491	57361	160511_QHF_FH_JSI11i_3	74.162	46.39			1.0681	1.051	21.282	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3193	1.2217	NaN	1	0	Median	0.86476	0.90418	NaN	1	1	Median	76462000	33920000	42542000	0	0	0	0	0	0	38615000	13367000	25248000	37847000	20553000	17294000	2099	1577	1979	12534;12535	17078;17079;17080	17078			3	
AGLNSLEAVK	1	Acetyl (Protein N-term)	1042.5659	0.56587452	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.656	62.022	2	5.3174E-10	55256	160511_QHF_FH_JSI9i_1	101.54	90.669			1.0281	0.99339	6.1494	4	0	Median	1.1796	0.93458	NaN	1	0	Median	0.79738	0.95114	NaN	1	0	Median	1.0638	1.0375	NaN	1	0	Median	0.99356	1.0569	NaN	1	0	Median	3415900000	1637200000	1778700000	999830000	441170000	558660000	715790000	403570000	312220000	786120000	374270000	411850000	914130000	418170000	495960000	2100	2069	1980	12536;12537;12538;12539	17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091	17091			11	
AGLNSLEAVKRK	2	Acetyl (K);Acetyl (Protein N-term)	1368.7725	0.77251325	2069	P67936	TPM4	Tropomyosin alpha-4 chain	no	no	1	1	0	2			By matching		15	0								1				1		72.703	61.937	2	1			NaN	NaN			2.3411	2.1645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3411	2.1645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1137600	332350	805250	0	0	0	0	0	0	1137600	332350	805250	0	0	0	2101	2069	1981	12540					0	
AGLQFPVGR	0	Unmodified	943.52395	0.52395013	945;819;2765;1091	P0C0S5;Q71UI9;Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;P16104;Q16777;Q6FI13	H2AFZ;H2AFV;HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;H2AFX;HIST2H2AC;HIST2H2AA3	Histone H2A.Z;Histone H2A.V;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.64	4	3	4				2	4	4	5	5	5	6	55.229	49.964	2	1.4763E-06	41614	160511_QHF_FH_JSI10i_3	132.09	59.055			1.1744	1.1661	35.129	21	5	Median	1.6709	1.4157	14.586	5	1	Median	1.3396	1.5585	14.069	5	0	Median	1.1176	1.1074	4.7442	5	2	Median	0.65349	0.71195	12.797	6	2	Median	10492000000	4973400000	5519100000	2305400000	838830000	1466500000	1681400000	720950000	960400000	3650800000	1701900000	1948900000	2854900000	1711700000	1143200000	2102	945;819;1091;2765	1982	12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558;12559;12560;12561	17092;17093;17094;17095;17096;17097;17098;17099;17100;17101;17102;17103;17104;17105;17106;17107;17108;17109;17110;17111;17112;17113;17114;17115;17116;17117;17118;17119;17120;17121;17122	17097			31	
AGLQTADK	1	Unmodified	802.41848	0.418482	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	9.5295	2.3287	2	0.028202	3905	160513_QHF_FH_JSI11Kac_3	50.703	22.485			0.91416	0.9445	18.929	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1019	1.0798	NaN	1	0	Median	0.75838	0.82617	NaN	1	0	Median	6633600	3488500	3145000	0	0	0	0	0	0	3902200	1889300	2012900	2731400	1599200	1132100	2103	1774	1983	12562;12563	17123	17123			1	
AGLQVYNK	1	Unmodified	891.48142	0.48141661	1046	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.94	4	4	4				3	3		4	4	5	5	25.32	21.761	2	2.5976E-05	18906	160511_QHF_FH_JSI10i_2	138.62	105.78			1.0008	0.96303	32.097	18	3	Median	1.4362	1.2227	15.019	4	0	Median	0.89218	1.0491	17.889	4	1	Median	1.0891	1.0612	17.094	5	1	Median	0.52221	0.58184	21.696	5	1	Median	5457000000	2739600000	2717500000	1027800000	398460000	629340000	1393200000	645820000	747350000	1688300000	870520000	817820000	1347700000	824770000	522950000	2104	1046	1984	12564;12565;12566;12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581	17124;17125;17126;17127;17128;17129;17130;17131;17132;17133;17134;17135;17136;17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151	17148			28	
AGLQVYNKCWK	2	Acetyl (K)	1407.6969	0.69690547	1046	P13987	CD59	CD59 glycoprotein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.042	56.403	2	4.1259E-07	30529	160513_QHF_FH_JSI11Kac_6	107.57	61.416			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11149000	11149000	0	0	0	0	0	0	0	11149000	11149000	0	0	0	0	2105	1046	1985	12582	17152	17152	876		1	
AGLSAGYVDAGAEPGR	0	Unmodified	1489.7161	0.71612058	3012	Q643R3	LPCAT4	Lysophospholipid acyltransferase LPCAT4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	41.017	40.595	2	2.462E-07	36399	160511_QHF_FH_JSI10i_1	95.273	68.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2106	3012	1986	12583;12584;12585;12586	17153;17154;17155;17156	17156			4	
AGLSQSLFER	0	Unmodified	1106.572	0.57202253	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.8	0.4		1	4							2	1	1	1	50.788	49.898	2	5.5995E-14	41722	160511_QHF_FH_JSI10i_3	157.96	94.391			1.1692	1.1225	31.704	5	0	Median	1.7489	1.4637	2.0284	2	0	Median	0.90958	1.0351	NaN	1	0	Median	1.1692	1.1225	NaN	1	0	Median	0.68103	0.67755	NaN	1	0	Median	652580000	304890000	347690000	239180000	85316000	153870000	158110000	85152000	72959000	178030000	85546000	92485000	77251000	48875000	28376000	2107	3904	1987	12587;12588;12589;12590;12591	17157;17158;17159;17160;17161;17162;17163	17160			7	
AGLSVLLK	1	Unmodified	799.51674	0.51673948	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.152	55.317	2	0.00033075	45467	160511_QHF_FH_JSI9i_3	111.82	55.694			1.1109	0.67879	32.321	4	0	Linear	1.9236	1.5763	NaN	1	0	Median	1.0712	1.2217	NaN	1	0	Median	1.152	1.0648	NaN	1	0	Median	0.71144	0.72659	NaN	1	0	Median	541000000	246590000	294410000	108320000	37264000	71053000	110210000	54024000	56181000	113480000	43710000	69767000	209000000	111590000	97409000	2108	3943	1988	12592;12593;12594;12595	17164;17165;17166;17167;17168;17169	17167			6	
AGLTDLQR	0	Acetyl (Protein N-term)	914.48214	0.48214489	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.765	46.086	2	0.0018418	41670	160511_QHF_FH_JSI12i_1	71.296	51.374			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2109	586	1989	12596;12597;12598;12599	17170;17171;17172;17173	17171			4	
AGLTDQVSHHAR	0	Unmodified	1290.6429	0.64289606	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		11.544	11.544	3	0.012565	9131	160511_QHF_FH_JSI11i_3	31.827	18.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2110	3667	1990	12600	17174	17174			1	
AGLTEPVLIR	0	Unmodified	1067.6339	0.63389451	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	56.859	55.732	2	0.001011	47750	160511_QHF_FH_JSI12i_2	80.219	43.824			0.86838	1.0186	43.784	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1201	1.3883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67321	0.74741	NaN	1	1	Median	133750000	77147000	56607000	0	0	0	59809000	30023000	29786000	0	0	0	73945000	47124000	26821000	2111	3720	1991	12601;12602	17175;17176	17175			2	
AGLTHLITMDLHQK	1	Unmodified	1576.8395	0.83954696	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.41			18						13	8	11	7	5	60.459	55.888	3;4	3.9471E-06	29440	160513_QHF_FH_JSI11Kac_6	102.73	0			1.0821	1.0471	45.545	30	8	Median	1.5189	1.2686	43.577	8	3	Median	0.85695	1.0066	54.79	11	4	Median	1.2132	1.144	20.018	6	1	Median	0.76359	0.76422	12.427	5	0	Median	2061100000	955680000	1105500000	403550000	144720000	258830000	726400000	326560000	399830000	376860000	171000000	205860000	554330000	313390000	240940000	2112	402	1992	12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621;12622;12623;12624;12625;12626;12627;12628;12629;12630;12631;12632;12633	17177;17178;17179;17180;17181;17182;17183;17184;17185;17186;17187;17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198;17199;17200;17201;17202;17203;17204;17205;17206;17207;17208;17209;17210;17211;17212;17213;17214;17215;17216	17189			37	
AGLTLFVGR	0	Acetyl (Protein N-term)	974.55492	0.5549159	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			91.762	91.728	2	0.0012673	83247	160511_QHF_FH_JSI10i_1	67.032	33.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2113	5058	1993	12634	17217	17217			1	
AGLTVRDPAVDR	0	Acetyl (Protein N-term)	1310.6943	0.69426293	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	44.158	43.329	2	0.001986	38900	160511_QHF_FH_JSI10i_1	70.977	51.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2114	1401	1994	12635;12636;12637;12638;12639	17218;17219;17220;17221;17222;17223	17220			6	
AGLVDDFEK	1	Unmodified	992.48148	0.48147619	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.45	4	7					1			3	3	3	3	46.944	45.299	2	3.5449E-06	41026	160511_QHF_FH_JSI10i_1	122.52	100.39			0.99354	1.0381	17.398	12	7	Median	1.5419	1.2772	19.423	3	2	Median	0.91004	1.0898	16.605	3	2	Median	1.041	1.013	18.489	3	2	Median	0.80181	0.87916	12.815	3	1	Median	3872600000	1896400000	1976200000	805170000	270080000	535100000	1071600000	501360000	570250000	1127400000	590010000	537390000	868380000	534920000	333460000	2115	589	1995	12640;12641;12642;12643;12644;12645;12646;12647;12648;12649;12650;12651	17224;17225;17226;17227;17228;17229;17230;17231;17232;17233;17234;17235;17236;17237;17238;17239;17240;17241;17242;17243;17244;17245;17246	17235			23	
AGLVDDFEKK	2	Acetyl (K)	1162.587	0.58700389	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13.5	0.5						2	2				2	1	1	62.637	52.517	2	3.7699E-05	28303	160513_QHF_FH_JSI10Kac_4	116.52	99.741			0.97174	1.1609	17.049	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97174	1.1609	0.35023	2	0	Median	1.3377	1.2749	NaN	1	0	Median	0.78214	0.86165	NaN	1	0	Median	90986000	51280000	39707000	0	0	0	50592000	27631000	22961000	2317100	988560	1328600	38077000	22660000	15417000	2116	589	1996	12652;12653;12654;12655	17247;17248;17249	17247	303		3	
AGLVELLLR	0	Unmodified	982.61752	0.61751616	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.393	89.826	2	4.8075E-05	78000	160511_QHF_FH_JSI12i_3	98.299	70.774			1.3083	1.1798	30.665	4	0	Linear	1.5639	1.2879	NaN	1	0	Median	0.84989	0.97385	NaN	1	0	Median	1.1908	1.0809	NaN	1	0	Median	0.60545	0.62698	NaN	1	0	Median	142930000	70794000	72139000	42166000	16893000	25273000	38622000	22627000	15996000	39540000	16611000	22929000	22604000	14663000	7941400	2117	2407	1997	12656;12657;12658;12659	17250;17251;17252;17253;17254;17255;17256;17257;17258	17258			9	
AGLVGPEFHEK	1	Unmodified	1182.6033	0.60332266	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	32.185	31.438	2;3	6.976E-05	26395	160511_QHF_FH_JSI12i_3	76.655	47.182			1.0596	1.0493	23.887	7	1	Median	1.4117	1.2298	NaN	1	0	Median	1.0615	1.2454	28.974	2	0	Median	1.0885	1.1031	NaN	1	0	Median	0.75264	0.76072	17.114	3	1	Plateau	660780000	342600000	318180000	105170000	41697000	63476000	179060000	96043000	83017000	156210000	81483000	74726000	220340000	123370000	96962000	2118	2636	1998	12660;12661;12662;12663;12664;12665;12666;12667;12668	17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269	17268			10	
AGLVIGK	1	Unmodified	656.42211	0.42211082	3966;3911	Q96AE4;Q92945	FUBP1;KHSRP	Far upstream element-binding protein 1;Far upstream element-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.46	4	4	4				1	3	3	4	5	5	5	29.192	25.36	2	0.0091535	21625	160511_QHF_FH_JSI11i_3	80.377	42.007			1.0033	1.0531	36.638	19	1	Median	2.2243	1.8131	47.045	4	1	Median	0.89825	1.0531	11.907	5	0	Median	1.1221	1.107	16.395	5	0	Median	0.66055	0.74212	10.883	5	0	Median	5650200000	2901900000	2748300000	921730000	315960000	605770000	1257800000	676660000	581160000	1818600000	916930000	901660000	1652000000	992300000	659740000	2119	3966;3911	1999	12669;12670;12671;12672;12673;12674;12675;12676;12677;12678;12679;12680;12681;12682;12683;12684;12685;12686;12687	17270;17271;17272;17273;17274;17275;17276;17277;17278;17279;17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295	17270			26	
AGLVIGKGGETIK	2	Acetyl (K)	1283.7449	0.74490152	3966;3911	Q96AE4;Q92945	FUBP1;KHSRP	Far upstream element-binding protein 1;Far upstream element-binding protein 2	no	no	1	0	0	1			By MS/MS		14	0							1					1		64.076	53.012	2	0.0059108	29828	160513_QHF_FH_JSI11Kac_4	68.893	32.2			0.71093	0.72225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71093	0.72225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2080700	1190200	890440	0	0	0	0	0	0	2080700	1190200	890440	0	0	0	2120	3966;3911	2000	12688	17296	17296	2997;2998		1	
AGLYGLPR	0	Unmodified	845.47594	0.4759373	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.74	2	4	2					1	4	2	2	4	5	44.861	41.331	2	0.00069002	36342	160511_QHF_FH_JSI9i_2	99.919	35.162			1.0021	1.0968	35.384	12	2	Median	1.8828	1.6177	5.3176	2	0	Median	0.98984	1.2003	1.3512	2	0	Median	1.1112	1.0968	8.3027	4	1	Median	0.65679	0.65097	6.398	4	1	Linear	7012400000	3569300000	3443100000	769200000	269210000	499990000	1009200000	546530000	462640000	2971200000	1350800000	1620400000	2262900000	1402800000	860120000	2121	1650	2001	12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701	17297;17298;17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311	17303			15	
AGMFVSK	1	Unmodified	738.37345	0.37344606	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				23.01	22.028	2	0.034446	18888	160511_QHF_FH_JSI9i_2	50.127	35.714			1.9525	1.661	NaN	1	0	Median	1.9525	1.661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144200000	40781000	103420000	144200000	40781000	103420000	0	0	0	0	0	0	0	0	0	2122	1872	2002	12702	17312	17312			1	
AGMIFYRK	1	Unmodified	984.52151	0.52150728	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			39.261	30.661	2	0.054403	17114	160513_QHF_FH_JSI10Kac_6	62.715	49.507			0.71399	0.8264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71399	0.8264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5489100	3039300	2449900	0	0	0	5489100	3039300	2449900	0	0	0	0	0	0	2123	1414	2003	12703	17313	17313			1	
AGMSAEQAQGLLEK	1	Unmodified	1431.7028	0.70277871	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	51.543	50.718	2	1.6511E-65	45722	160511_QHF_FH_JSI10i_1	229.97	204.34			0.89579	1.0634	26.184	8	1	Median	1.6705	1.4374	34.428	2	1	Median	0.86922	1.0634	2.0205	2	0	Median	1.0088	1.0055	13.07	2	0	Median	0.75262	0.8046	3.1598	2	0	Median	2827000000	1538700000	1288300000	631740000	230740000	400990000	730260000	468940000	261320000	724340000	433710000	290630000	740660000	405320000	335340000	2124	5526	2004	12704;12705;12706;12707;12708;12709;12710;12711	17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324;17325;17326;17327;17328;17329;17330;17331;17332	17323			19	
AGMSAEQAQGLLEK	1	Oxidation (M)	1447.6977	0.69769333	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	1	2	45.061	36.226	2	2.7915E-12	31666	160511_QHF_FH_JSI11i_1	117.95	101.69			0.8438	0.92258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8438	0.92258	NaN	1	0	Median	4891800	2497900	2393900	0	0	0	0	0	0	0	0	0	4891800	2497900	2393900	2125	5526	2004	12712;12713;12714;12715	17333;17334;17335;17336;17337	17333		2685	5	
AGMSSLK	1	Unmodified	692.35271	0.35271062	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.895	11.578	2	0.012945	9273	160511_QHF_FH_JSI10i_1	72.138	52.576			0.4296	0.48091	5.7076	2	1	Median	NaN	NaN	NaN	0	0	Median	0.38851	0.46189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47503	0.50072	NaN	1	0	Median	662080000	448350000	213720000	0	0	0	440150000	282620000	157530000	0	0	0	221930000	165740000	56191000	2126	1494;3835	2005	12716;12717	17338;17339	17339			2	
AGMSSNQSISSPVLDAVPR	0	Unmodified	1914.9469	0.94692516	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	66.319	65.595	2	2.0723E-67	59783	160511_QHF_FH_JSI12i_1	188.59	162.06			1.1918	1.0743	9.9369	2	2	Median	1.1963	1.0014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1874	1.1525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80702000	31659000	49043000	38048000	14361000	23687000	0	0	0	42655000	17298000	25357000	0	0	0	2127	5474	2006	12718;12719;12720;12721;12722	17340;17341;17342;17343;17344;17345	17342			6	
AGMTEEAQR	0	Unmodified	991.43929	0.4392938	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.9162	7.6802	2	0.00010658	5500	160511_QHF_FH_JSI10i_1	111.17	86.273			0.94418	1.1293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94418	1.1293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129620000	66633000	62989000	0	0	0	129620000	66633000	62989000	0	0	0	0	0	0	2128	1895	2007	12723	17346	17346			1	
AGMTHIVR	0	Oxidation (M)	899.46472	0.46472069	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.6		2	14						5	9	5	5	2	8.0147	5.8207	2;3	0.00069026	3490	160511_QHF_FH_JSI9i_3	107.59	84.664			1.0952	1.0607	28.579	20	2	Median	1.5303	1.2706	29.185	9	1	Median	0.94677	1.0684	9.7742	5	0	Median	1.0952	1.0411	25.305	4	1	Median	0.58355	0.62113	15.56	2	0	Median	6871200000	3261100000	3610000000	3241400000	1372600000	1868900000	2691800000	1394300000	1297500000	816590000	414970000	401620000	121370000	79302000	42068000	2129	1484	2008	12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741;12742;12743;12744	17347;17348;17349;17350;17351;17352;17353;17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365	17357		1162	18	
AGMTHIVR	0	Unmodified	883.46981	0.46980607	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.4		4	10						8	9	6	4	3	13.674	10.675	2;3	0.00019332	8766	160511_QHF_FH_JSI11i_3	97.798	53.187			0.92206	1.0111	29.441	20	4	Median	1.47	1.2643	36.464	7	3	Median	0.82949	1.028	10.58	6	0	Median	1.0395	0.9978	9.966	4	1	Median	0.58309	0.58977	24.733	3	0	Median	12500000000	5684300000	6815300000	5940600000	2330500000	3610100000	3756200000	1830900000	1925300000	1799000000	874790000	924210000	1003800000	648040000	355780000	2130	1484	2008	12745;12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759;12760;12761;12762;12763;12764;12765;12766	17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389;17390;17391	17366			26	
AGNAIHAILLYR	0	Unmodified	1310.7459	0.74590457	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	65.704	56.632	2;3	1.8728E-15	31006	160513_QHF_FH_JSI10Kac_6	135.43	116.16			0.77254	0.90774	22.641	7	0	Median	1.4236	1.2274	0.42796	2	0	Median	0.75697	0.89914	1.3463	2	0	Median	1.182	1.1097	NaN	1	0	Median	0.6846	0.72532	1.7226	2	0	Median	2135600000	1066100000	1069500000	346650000	163500000	183160000	1214800000	611680000	603140000	365680000	165080000	200590000	208470000	125870000	82601000	2131	1704	2009	12767;12768;12769;12770;12771;12772;12773	17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403	17400			12	
AGNASKDEIDSAVK	2	Unmodified	1403.6892	0.68923713	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									1	3	2	17.645	17.266	2	0.0010467	14643	160511_QHF_FH_JSI11i_1	153.39	116.87			0.89999	0.87331	51.085	6	5	Median	NaN	NaN	NaN	0	0	Median	1.0347	1.211	NaN	1	0	Median	0.80999	0.76528	25.538	3	3	Plateau	0.45866	0.47868	58.129	2	2	Median	379590000	220920000	158670000	0	0	0	90988000	46810000	44179000	175660000	93503000	82160000	112940000	80607000	32330000	2132	1226	2010	12774;12775;12776;12777;12778;12779	17404;17405;17406;17407;17408;17409;17410	17405			7	
AGNASKDEIDSAVK	2	Acetyl (K)	1445.6998	0.69980182	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12.3	0.471					2	1						2	1	43.063	34.045	2	0.002478	15941	160513_QHF_FH_JSI12Kac_2	71.555	58.979			0.69838	0.97403	40.248	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72172	0.69144	48.46	2	0	Median	0.94844	0.9967	NaN	1	0	Median	10148000	5385400	4762200	0	0	0	0	0	0	6424300	3685900	2738400	3723300	1699500	2023800	2133	1226	2010	12780;12781;12782	17411;17412;17413	17413	1106		3	
AGNELLESSAGDDASSLR	0	Unmodified	1790.8282	0.82824981	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.619	47.934	2	2.9528E-16	43595	160511_QHF_FH_JSI12i_1	121.31	107.15			1.3131	1.524	11.563	3	1	Plateau	2.0223	1.7352	NaN	1	1	Median	1.3131	1.524	NaN	1	0	Median	1.4489	1.3778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101930000	40194000	61740000	37356000	12923000	24432000	39280000	16728000	22552000	25299000	10543000	14755000	0	0	0	2134	5458	2011	12783;12784;12785;12786	17414;17415;17416;17417	17415			2	
AGNFDSEER	0	Acetyl (Protein N-term)	1065.4363	0.43631691	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		25.011	24.783	2	0.0013006	21780	160511_QHF_FH_JSI11i_1	66.621	60.962			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2135	1582	2012	12787;12788	17418;17419	17418			2	
AGNFIGWLHIDGANLSVLLVEHALSK	1	Unmodified	2773.4915	0.49153437	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	97.307	88.503	3;4	3.4478E-224	50254	160513_QHF_FH_JSI11Kac_6	314.51	300.45			1.1708	1.1077	35.347	7	1	Median	1.4875	1.2854	8.0636	2	0	Median	0.68667	0.80471	NaN	1	1	Median	1.189	1.1301	2.8302	2	0	Median	0.55691	0.58307	1.5855	2	0	Median	6680600000	3007800000	3672700000	2743500000	1020600000	1722800000	238090000	115490000	122610000	2690100000	1244900000	1445100000	1008900000	626760000	382150000	2136	3213	2013	12789;12790;12791;12792;12793;12794;12795	17420;17421;17422;17423;17424;17425;17426;17427;17428;17429;17430;17431	17422			12	
AGNFYVPAEPK	1	Unmodified	1191.5924	0.59242362	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.04	2	4	3			3	3	4		4	6	4	5	50.59	44.432	2;3	4.1941E-17	25643	160513_QHF_FH_JSI11Kac_4	161.17	130.61			0.89264	1.0204	28.739	18	1	Median	1.6478	1.4072	17.933	3	0	Median	0.87377	1.0408	9.7498	6	0	Median	1.0117	0.98618	6.3874	4	1	Median	0.60135	0.63899	9.2467	5	0	Median	2549800000	1254700000	1295100000	603460000	208660000	394800000	919970000	453570000	466400000	488030000	255940000	232080000	538310000	336500000	201810000	2137	1138	2014	12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814	17432;17433;17434;17435;17436;17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448;17449;17450;17451;17452;17453;17454;17455;17456	17440			24	
AGNGQWASVIR	0	Unmodified	1157.5942	0.59415496	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	3	1	1	43.322	42.427	2	2.0163E-05	34779	160511_QHF_FH_JSI9i_3	103.01	75.875			0.81425	0.97942	30.25	6	4	Median	1.4205	1.1999	10.876	2	1	Median	0.81425	0.97942	1.1715	2	1	Median	0.75565	0.69866	NaN	1	1	Median	0.56979	0.57415	NaN	1	1	Median	503790000	286690000	217090000	164310000	59520000	104790000	143650000	80831000	62818000	113780000	82518000	31261000	82047000	63824000	18223000	2138	2665	2015	12815;12816;12817;12818;12819;12820;12821	17457;17458;17459;17460;17461;17462;17463;17464	17460			8	
AGNILFTLDGDIK	1	Unmodified	1375.7347	0.73473076	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.107	85.427	2	9.6516E-05	75129	160511_QHF_FH_JSI11i_2	94.616	66.603			0.78583	0.88493	25.355	4	0	Median	1.3777	1.1822	NaN	1	0	Median	0.74601	0.95654	NaN	1	0	Median	0.82777	0.81868	NaN	1	0	Median	0.5862	0.64813	NaN	1	0	Median	71218000	41174000	30044000	10882000	6294400	4587700	13128000	6707100	6421100	26360000	14818000	11542000	20847000	13354000	7493000	2139	4673	2016	12822;12823;12824;12825	17465;17466;17467;17468;17469;17470;17471	17469			7	
AGNILLNTEGHAK	1	Unmodified	1336.7099	0.709913	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	27.703	27.68	2;3	7.1987E-23	23744	160511_QHF_FH_JSI11i_3	146.36	127.11			0.997	0.97441	18.001	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1595	1.0875	7.002	2	0	Median	0.82829	0.83067	14.042	2	0	Median	682340000	330530000	351810000	0	0	0	0	0	0	263820000	121170000	142650000	418520000	209360000	209160000	2140	2368	2017	12826;12827;12828;12829	17472;17473;17474;17475;17476;17477;17478;17479;17480	17474			9	
AGNILLTEPGQVK	1	Unmodified	1338.7507	0.75071518	4677;3237	Q7L7X3;Q9H2K8	TAOK1;TAOK3	Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO3	no	no	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	52.492	51.593	2	0.0077656	44300	160511_QHF_FH_JSI12i_2	59.542	53.984			1.4474	1.4884	65.122	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97013	0.93918	NaN	1	1	Median	2.1595	2.3589	NaN	1	1	Median	78936000	32996000	45941000	0	0	0	0	0	0	60779000	26647000	34132000	18158000	6348900	11809000	2141	3237;4677	2018	12830;12831	17481;17482	17482			2	
AGNLGGGVVTIER	0	Unmodified	1241.6728	0.67279921	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.15	2	7	4				5	5		4	6	8	5	47.519	42.535	2;3	1.0197E-53	36662	160511_QHF_FH_JSI11i_2	224.42	183.39			0.92483	0.96364	30.874	23	2	Median	1.2605	1.0534	54.724	4	0	Median	0.87015	1.0322	15.136	6	1	Median	0.98904	0.97764	19.505	8	1	Median	0.55292	0.60399	20.427	5	0	Median	12108000000	6331600000	5776400000	1997400000	810250000	1187200000	2458100000	1405100000	1053100000	4386700000	2087700000	2299100000	3265700000	2028600000	1237100000	2142	1431	2019	12832;12833;12834;12835;12836;12837;12838;12839;12840;12841;12842;12843;12844;12845;12846;12847;12848;12849;12850;12851;12852;12853;12854	17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493;17494;17495;17496;17497;17498;17499;17500;17501;17502;17503;17504;17505;17506;17507;17508;17509;17510;17511;17512;17513	17500			31	
AGNLGGGVVTIERSK	1	Unmodified	1456.7998	0.79979063	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.014	34.557	3	0.0049739	28133	160511_QHF_FH_JSI9i_3	52.522	38.806			29.736	24.537	NaN	1	1	Median	29.736	24.537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32442000	1298100	31144000	32442000	1298100	31144000	0	0	0	0	0	0	0	0	0	2143	1431	2020	12855	17514	17514			1	
AGNNMLLVGVHGPR	0	Unmodified	1433.7562	0.75615168	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.32	6.56		3	8						8	6	5	4	4	50.573	45.886	2;3	4.2735E-31	25230	160513_QHF_FH_JSI10Kac_6	168.98	148.78			1.0347	1.0486	26.041	18	1	Median	1.5755	1.2982	16.796	6	0	Median	0.82247	0.99141	6.8791	5	0	Median	1.0659	1.0171	9.7278	4	1	Median	0.6791	0.72359	7.8022	3	0	Median	5572600000	2646600000	2926000000	2170300000	843930000	1326400000	1937700000	1019300000	918360000	1052200000	514090000	538160000	412320000	269270000	143050000	2144	1192	2021	12856;12857;12858;12859;12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871;12872;12873;12874	17515;17516;17517;17518;17519;17520;17521;17522;17523;17524;17525;17526;17527;17528;17529;17530;17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544;17545;17546;17547;17548;17549	17547			34	
AGNNMLLVGVHGPR	0	Oxidation (M)	1449.7511	0.7510663	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.32			5					2	4	4	5	1	1	41.417	35.52	2;3	1.608E-05	19490	160513_QHF_FH_JSI11Kac_6	97.86	82.473			1.0767	1.0806	26.506	9	2	Median	1.6697	1.3808	19.139	4	0	Median	0.84588	0.98422	7.2704	3	2	Median	1.0767	1.0806	NaN	1	0	Median	0.72785	0.78628	NaN	1	0	Median	605140000	286520000	318630000	243160000	92839000	150320000	299390000	161960000	137430000	35417000	16584000	18834000	27177000	15134000	12043000	2145	1192	2021	12875;12876;12877;12878;12879;12880;12881;12882;12883;12884;12885	17550;17551;17552;17553;17554;17555;17556;17557;17558;17559;17560;17561;17562	17555		812	12	
AGNPIFYYVAR	0	Unmodified	1269.6506	0.6506072	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			71.095	69.632	2	0.0051532	37499	160513_QHF_FH_JSI10Kac_6	65.224	43.852			0.70169	0.80608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70169	0.80608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11254000	5740600	5513500	0	0	0	11254000	5740600	5513500	0	0	0	0	0	0	2146	1193	2022	12886;12887	17563;17564	17564			2	
AGNVIFR	0	Unmodified	775.43407	0.43407249	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	26.327	25.444	2	0.0030918	21100	160511_QHF_FH_JSI10i_3	106.76	24.498			0.74247	0.86843	64.165	3	1	Plateau	1.5305	1.2424	NaN	1	0	Median	0.74247	0.86843	NaN	1	0	Median	3.1597	3.0198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1015200000	271220000	744000000	143290000	50524000	92764000	223960000	115170000	108780000	647970000	105520000	542450000	0	0	0	2147	1865	2023	12888;12889;12890;12891	17565;17566;17567;17568;17569;17570;17571	17568			7	
AGNVIFRK	1	Unmodified	903.52904	0.5290355	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				24.607	17.114	3	0.050314	9665	160513_QHF_FH_JSI9Kac_6	26.415	9.0193			0.62097	0.51632	NaN	1	1	Median	0.62097	0.51632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5281100	3491400	1789700	5281100	3491400	1789700	0	0	0	0	0	0	0	0	0	2148	1865	2024	12892	17572	17572			1	
AGNYEEALQLYQHAVQYFLHVVK	1	Unmodified	2719.3758	0.37583591	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	2	3	98.538	91.055	3;4	3.5282E-190	53534	160513_QHF_FH_JSI10Kac_6	299.42	278.93			0.78727	0.93411	28.507	9	1	Median	1.5936	1.3474	0.16822	2	0	Median	0.70625	0.84346	14.437	2	0	Median	1.0953	1.0371	0.27831	2	0	Median	0.73328	0.76463	11.506	3	1	Plateau	8717600000	4310800000	4406800000	1946300000	804440000	1141800000	2933700000	1656500000	1277200000	2955300000	1337300000	1618000000	882360000	512590000	369770000	2149	507	2025	12893;12894;12895;12896;12897;12898;12899;12900;12901	17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585;17586	17585			14	
AGPAAAFR	0	Acetyl (Protein N-term)	801.41334	0.41333704	3510	Q8N2U0	TMEM256	Transmembrane protein 256	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	39.898	39.268	2	0.00048108	35674	160511_QHF_FH_JSI12i_1	99.384	87.663			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2150	3510	2026	12902;12903;12904;12905;12906	17587;17588;17589;17590;17591;17592;17593;17594;17595	17590			9	
AGPATTTSSETR	0	Unmodified	1177.5575	0.55749468	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	7.3816	4.611	2	0.0081253	4509	160511_QHF_FH_JSI12i_1	59.542	41.317			1.1682	0.79939	32.955	3	2	Plateau	1.2854	1.0471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1682	1.1092	NaN	1	0	Median	0.57941	0.6103	NaN	1	1	Median	116210000	60282000	55931000	52072000	20824000	31247000	0	0	0	1968500	1011200	957240	62173000	38446000	23727000	2151	3653	2027	12907;12908;12909	17596;17597;17598	17596			3	
AGPDLPSLPSHALEDEGWAAAAPSPGSAR	0	Unmodified	2826.3573	0.35728531	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	83.457	83.049	3	3.0999E-43	74266	160511_QHF_FH_JSI11i_3	173.05	146.84			0.9246	0.98983	23.312	5	1	Median	1.5675	1.3523	NaN	1	1	Median	0.82315	0.98983	NaN	1	0	Median	1.0839	1.0758	29.93	2	0	Median	0.81449	0.82337	NaN	1	0	Median	267550000	125440000	142110000	30090000	9954900	20135000	49371000	26481000	22890000	127990000	57071000	70924000	60097000	31931000	28166000	2152	4701	2028	12910;12911;12912;12913;12914	17599;17600;17601;17602;17603;17604;17605;17606;17607	17600			8	
AGPEGTSQEIPK	1	Unmodified	1212.5986	0.59863121	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.4	4.8	4					1				1		2	2	23.269	21.099	2	0.00018472	18175	160511_QHF_FH_JSI11i_1	97.452	76.713			1.0447	1.0085	8.3471	5	3	Median	1.2822	1.0682	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0655	1.0382	4.1112	2	1	Median	0.87992	0.91294	5.252	2	2	Median	542500000	257050000	285440000	143210000	59493000	83712000	0	0	0	120020000	55522000	64496000	279270000	142040000	137230000	2153	4288	2029	12915;12916;12917;12918;12919	17608;17609;17610;17611;17612	17608			5	
AGPESDAQYQFTGIK	1	Unmodified	1610.7577	0.75765105	4128	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.22	5					2	2			1	2	2	4	55.646	50.285	2	7.6629E-40	44573	160511_QHF_FH_JSI9i_1	234.41	212.08			0.90754	0.96661	13.616	8	0	Median	1.2524	0.99412	NaN	1	0	Median	0.96953	1.1332	4.5123	2	0	Median	0.98355	0.95369	18.345	2	0	Median	0.88585	0.93986	6.8759	3	0	Plateau	4096500000	2005500000	2091000000	981120000	462730000	518390000	1156300000	570100000	586190000	1229400000	562510000	666920000	729710000	410210000	319490000	2154	4128	2030	12920;12921;12922;12923;12924;12925;12926;12927;12928	17613;17614;17615;17616;17617;17618;17619;17620	17617			8	
AGPESDAQYQFTGIKK	2	Unmodified	1738.8526	0.85261407	4128	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	3	4	4	41.008	40.331	2;3	3.2195E-22	34356	160511_QHF_FH_JSI12i_3	137.81	116.28			0.98023	1.033	27.791	12	7	Median	0.85205	0.72475	18.545	2	2	Median	0.72225	0.88022	35.323	2	1	Median	1.2271	1.1514	29.399	4	2	Median	1.0375	0.93158	9.9651	4	2	Linear	2929900000	1482300000	1447600000	314840000	143850000	171000000	441480000	247050000	194440000	803210000	381370000	421840000	1370400000	710020000	660360000	2155	4128	2031	12929;12930;12931;12932;12933;12934;12935;12936;12937;12938;12939;12940;12941	17621;17622;17623;17624;17625;17626;17627;17628;17629;17630;17631;17632;17633	17633			13	
AGPFDEFQIATMLK	1	Unmodified	1566.7752	0.77521537	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	3	3								1	2	1	2	101.32	101.23	2	1.3273E-14	87047	160511_QHF_FH_JSI12i_2	158.25	139.51			1.0528	1.2105	27.657	6	0	Median	1.8289	1.5655	NaN	1	0	Median	1.0965	1.3356	26.836	2	0	Median	0.84174	0.8156	NaN	1	0	Median	1.0235	1.1184	24.117	2	0	Median	1227400000	641130000	586300000	337350000	139220000	198130000	399840000	215130000	184710000	97923000	55614000	42309000	392330000	231170000	161160000	2156	5206	2032	12942;12943;12944;12945;12946;12947	17634;17635;17636;17637;17638	17634			5	
AGPGTLSVTIEGPSK	1	Unmodified	1412.7511	0.75110911	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	52.951	52.252	2	1.629E-14	47271	160511_QHF_FH_JSI11i_1	156.14	139.47			0.93122	1.0158	19.294	8	0	Median	1.3955	1.1843	NaN	1	0	Median	0.80527	0.9598	6.8087	2	0	Median	1.0956	1.0775	7.134	2	0	Median	0.71531	0.73555	29.629	3	0	Plateau	553680000	301070000	252610000	51435000	22937000	28499000	164910000	98800000	66111000	156640000	83042000	73593000	180700000	96295000	84404000	2157	512	2033	12948;12949;12950;12951;12952;12953;12954;12955;12956	17639;17640;17641;17642;17643;17644;17645;17646;17647;17648;17649;17650;17651;17652;17653;17654	17640			16	
AGPGVVR	0	Unmodified	654.38131	0.38130863	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	3	0			3							1		1	1	8.6343	8.4696	2	0.02826	5941	160511_QHF_FH_JSI12i_3	53.185	28.999			0.91604	0.92144	32.452	3	0	Plateau	1.9255	1.5829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.063	1.0365	NaN	1	0	Median	0.81253	0.83656	NaN	1	0	Median	1271700000	605460000	666270000	118080000	40180000	77895000	0	0	0	561570000	243780000	317800000	592090000	321510000	270580000	2158	2698	2034	12957;12958;12959	17655	17655			1	
AGPIWDLR	0	Unmodified	926.4974	0.49740102	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.91	2	4	3					1	2	3	3	3	3	60.363	57.261	2	0.00024363	48993	160511_QHF_FH_JSI12i_3	116.88	76.781			1.0899	1.0808	24.852	11	0	Median	1.4237	1.1969	21.224	3	0	Plateau	0.98371	1.1794	12.343	2	0	Median	1.0749	1.0398	5.6257	3	0	Plateau	0.78527	0.85343	9.9436	3	0	Median	4795200000	2469800000	2325400000	452010000	178850000	273160000	694230000	372170000	322060000	1663500000	808340000	855200000	1985400000	1110400000	875010000	2159	423;326	2035	12960;12961;12962;12963;12964;12965;12966;12967;12968;12969;12970;12971	17656;17657;17658;17659;17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675	17673			20	
AGPLSGK	1	Unmodified	628.35443	0.35442518	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	8.2622	8.001	2	0.039053	5715	160511_QHF_FH_JSI11i_3	47.849	15.378			0.8665	0.86904	18.608	4	0	Median	1.5149	1.2108	NaN	1	0	Median	0.72238	0.82224	NaN	1	0	Median	0.85198	0.81035	NaN	1	0	Median	0.88127	0.91851	NaN	1	0	Median	1258000000	620000000	638020000	207770000	71643000	136120000	157830000	85066000	72767000	321110000	162380000	158730000	571320000	300910000	270400000	2160	1128	2036	12972;12973;12974;12975	17676;17677	17676			2	
AGPNASIISLK	1	Unmodified	1069.6132	0.61315906	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	50.387	49.558	2	0.0018333	42630	160511_QHF_FH_JSI11i_2	60.691	42.544			0.84454	0.87029	27.193	8	1	Median	1.0183	0.87414	19.897	2	0	Median	0.79172	0.94954	9.4679	2	0	Median	0.92998	0.92508	11.491	2	0	Median	0.49868	0.53238	8.6594	2	1	Median	560970000	327420000	233550000	114400000	62671000	51734000	151370000	94076000	57297000	174360000	93723000	80636000	120830000	76949000	43882000	2161	4623	2037	12976;12977;12978;12979;12980;12981;12982;12983	17678;17679;17680;17681	17680			4	
AGPPGGSSR	0	Unmodified	784.38277	0.3827652	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		4.9548	-3.7657	2	0.01213	1551	160513_QHF_FH_JSI11Kac_4	55.531	28.568			1.0213	1.1038	3.9001	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95137	1.1346	NaN	1	0	Median	1.0965	1.0737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20066000	10387000	9679600	0	0	0	4235900	2112100	2123700	15830000	8274500	7555900	0	0	0	2162	2746	2038	12984;12985	17682;17683	17683			2	
AGPPPEK	1	Unmodified	694.36499	0.36498987	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.4779	5.1859	2	0.048713	3154	160511_QHF_FH_JSI10i_1	43.124	16.161			0.84458	0.94518	22.054	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9433	1.1047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75619	0.8087	NaN	1	0	Median	622370000	322020000	300350000	0	0	0	360360000	171150000	189210000	0	0	0	262000000	150870000	111130000	2163	4442	2039	12986;12987	17684	17684			1	
AGPPVPASHIAPAPVQPPMIR	0	Unmodified	2102.1459	0.14589974	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	66.827	66.454	3	4.9457E-06	57477	160511_QHF_FH_JSI12i_3	67.995	62.665			0.82471	0.80416	26.939	4	1	Median	1.4536	1.2691	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86575	0.82671	NaN	1	0	Median	0.71779	0.72878	10.009	2	1	Median	126720000	69230000	57489000	15206000	6670800	8535200	0	0	0	42508000	31469000	11040000	69005000	31090000	37915000	2164	167	2040	12988;12989;12990;12991	17685;17686;17687;17688;17689	17688			4	
AGPSAQEPGSQTPLK	1	Unmodified	1466.7365	0.73652168	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.542	24.979	2	1.8514E-06	22176	160511_QHF_FH_JSI12i_1	130.56	116.41			0.92538	0.99865	11.973	4	0	Median	1.2802	1.0646	NaN	1	0	Median	0.87982	1.0347	NaN	1	0	Median	0.97331	0.96381	NaN	1	0	Median	0.80518	0.81512	NaN	1	0	Median	456910000	229810000	227100000	115720000	44592000	71129000	113880000	63432000	50450000	112150000	55174000	56980000	115150000	66611000	48538000	2165	404	2041	12992;12993;12994;12995	17690;17691;17692;17693;17694;17695;17696;17697;17698	17693			9	
AGPSQHSSPAVSDSLPSNSLK	1	Unmodified	2065.0076	0.0076111585	2365	Q13163	MAP2K5	Dual specificity mitogen-activated protein kinase kinase 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	37.252	37.171	3	2.4526E-06	31571	160511_QHF_FH_JSI12i_3	66.644	57.48			0.70662	0.69701	21.465	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85962	0.81125	NaN	1	1	Median	0.58085	0.59885	NaN	1	0	Median	61438000	34868000	26569000	0	0	0	0	0	0	37560000	22271000	15289000	23877000	12597000	11280000	2166	2365	2042	12996;12997	17699;17700	17700			2	
AGPSYSMPVHAAVQMTTEQLK	1	Unmodified	2245.0871	0.087123808	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	3	2	1	71.665	70.973	3	1.0128E-22	61567	160511_QHF_FH_JSI12i_3	162.85	150.19			0.87804	0.94409	21.873	7	5	Median	1.5961	1.3783	NaN	1	1	Median	0.64909	0.76272	17.523	3	2	Median	1.0766	0.99681	7.6841	2	2	Median	0.8301	0.85444	NaN	1	0	Median	591140000	314240000	276910000	34170000	14556000	19614000	77617000	44100000	33517000	297770000	155280000	142480000	181590000	100300000	81293000	2167	2540	2043	12998;12999;13000;13001;13002;13003;13004	17701;17702;17703;17704;17705;17706;17707;17708;17709;17710;17711	17710			11	
AGPVAVQVK	1	Unmodified	867.5178	0.51780212	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.57	0.728	4	2	1							2	2	2	1	25.282	24.592	2	0.0012639	21470	160511_QHF_FH_JSI11i_1	82.671	48.668			1.0074	1.0173	41.12	7	0	Median	0.70889	0.57711	50.142	2	0	Median	0.84188	0.99462	5.1373	2	0	Median	1.2629	1.2525	29.415	2	0	Median	1.0559	1.1142	NaN	1	0	Median	861220000	425460000	435760000	127250000	64120000	63129000	254420000	127410000	127010000	262100000	127720000	134390000	217450000	106210000	111230000	2168	2409	2044	13005;13006;13007;13008;13009;13010;13011	17712;17713	17712			2	
AGPVYSHTLAFK	1	Unmodified	1289.6768	0.67682195	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			5							1	2	1	1	41.761	40.793	2;3	1.2911E-05	34211	160511_QHF_FH_JSI10i_3	98.105	81.473			0.88287	1.0356	14.599	5	0	Median	1.5257	1.2395	NaN	1	0	Median	0.88215	1.0419	0.85632	2	0	Median	1.1377	1.0242	NaN	1	0	Median	0.8261	0.82234	NaN	1	0	Median	287120000	146800000	140330000	81849000	36178000	45670000	110850000	65471000	45375000	33752000	16949000	16803000	60677000	28199000	32478000	2169	303	2045	13012;13013;13014;13015;13016	17714;17715;17716;17717	17715			4	
AGQAFRK	1	Acetyl (Protein N-term)	818.43989	0.43988615	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	5	6	6	6	16.925	12.629	2	0.0013083	10705	160511_QHF_FH_JSI12i_3	77.72	77.72			0.98161	1.0003	12.858	23	0	Median	1.0579	0.89089	14.696	5	0	Median	0.83931	0.99632	5.3977	6	0	Median	1.1217	1.0774	16.534	6	0	Median	0.98705	1.0766	4.1073	6	0	Median	14400000000	7002400000	7398000000	3686700000	1764200000	1922500000	4301700000	2199700000	2102100000	3531400000	1639500000	1891900000	2880600000	1399100000	1481500000	2170	1959	2046	13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031;13032;13033;13034;13035;13036;13037;13038;13039	17718;17719;17720;17721;17722;17723;17724;17725;17726;17727;17728;17729;17730;17731;17732;17733;17734;17735;17736;17737;17738;17739;17740;17741;17742;17743;17744;17745;17746;17747;17748;17749	17747			32	
AGQAVDDFIEK	1	Unmodified	1191.5772	0.57716749	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	3	1	2	48.618	43.878	2	1.6274E-23	39966	160511_QHF_FH_JSI12i_1	179.67	158.22			1.3802	1.5536	14.773	7	2	Median	1.9122	1.5526	NaN	1	1	Median	1.3802	1.5955	5.9509	3	1	Median	1.7708	1.7356	NaN	1	0	Median	1.1614	1.2449	11.023	2	0	Median	4719200000	1828100000	2891100000	879700000	282470000	597230000	1294100000	536950000	757110000	1377800000	493290000	884560000	1167600000	515430000	652150000	2171	1764	2047	13040;13041;13042;13043;13044;13045;13046	17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761;17762	17754			13	
AGQCVIGLQMGTNK	1	Unmodified	1475.7225	0.72246829	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	49.484	48.984	2	0.00022008	44042	160511_QHF_FH_JSI10i_1	88.021	64.645			0.74635	0.87758	15.201	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74635	0.87758	NaN	1	0	Median	0.69899	0.68514	NaN	1	0	Median	0.87431	0.90346	NaN	1	0	Median	126000000	70102000	55897000	0	0	0	46908000	26619000	20289000	44044000	23627000	20416000	35047000	19855000	15191000	2172	4268	2048	13047;13048;13049	17763	17763			1	
AGQEHLLR	0	Unmodified	922.49846	0.49846366	2728;2813	Q16222;Q3KQV9	UAP1;UAP1L1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase;UDP-N-acetylhexosamine pyrophosphorylase-like protein 1	no	no	0	0	0	0		By MS/MS			2	0		1									1			10.684	10.158	3	0.028307	8061	160511_QHF_FH_JSI10i_2	30.254	4.5175			0.92112	1.16	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92112	1.16	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96183000	47155000	49028000	0	0	0	96183000	47155000	49028000	0	0	0	0	0	0	2173	2728;2813	2049	13050	17764	17764			1	
AGQEVESGQK	1	Unmodified	1031.4884	0.48835248	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		5.2085	4.868	2	0.00035305	2588	160511_QHF_FH_JSI9i_1	77.192	41.312			2.2488	1.9858	4.4151	2	1	Median	2.5021	2.0488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0211	1.9248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85522000	28946000	56577000	34102000	10570000	23533000	0	0	0	51420000	18376000	33044000	0	0	0	2174	2564	2050	13051;13052	17765;17766	17766			2	
AGQFLDNLHINLLK	1	Unmodified	1594.8831	0.88312633	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	88.196	87.691	3	2.1324E-05	78160	160511_QHF_FH_JSI11i_3	112.84	100.28			0.73074	0.83086	34.55	5	2	Median	1.7971	1.4742	NaN	1	0	Median	0.71806	0.83086	NaN	1	0	Median	1.1697	1.0813	NaN	1	0	Median	0.65671	0.68137	19.836	2	2	Median	193800000	109410000	84387000	20772000	9360300	11412000	28368000	15561000	12807000	44150000	25348000	18801000	100510000	59142000	41367000	2175	5134	2051	13053;13054;13055;13056;13057	17767;17768;17769;17770;17771;17772	17768			6	
AGQGGHAYLK	1	Unmodified	1000.509	0.50902834	3569	Q8N8Q9	NIPA2	Magnesium transporter NIPA2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		7.2339	7.2339	3	0.00079214	4980	160511_QHF_FH_JSI11i_3	60.518	43.847			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2176	3569	2052	13058	17773	17773			1	
AGQHSQAVADLQAALR	0	Unmodified	1634.8489	0.84886609	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		48.352	47.568	3	0.0015615	39906	160511_QHF_FH_JSI10i_3	48.623	42.913			1.066	1.1068	11.345	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89205	1.0215	NaN	1	0	Median	1.274	1.1993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117590000	52555000	65038000	0	0	0	59612000	31297000	28315000	57981000	21258000	36723000	0	0	0	2177	3117	2053	13059;13060	17774	17774			1	
AGQLTSEEDTLSLVTADHSHVFSFGGYPLR	0	Unmodified	3233.5629	0.56292099	831	P05187;P10696	ALPP;ALPPL2	Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	yes	no	0	0	0	0			By MS/MS		3	0			1									1		97.081	97.081	4	3.657E-19	86328	160511_QHF_FH_JSI11i_3	93.147	87.828			0.6463	0.58746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6463	0.58746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48708000	30208000	18500000	0	0	0	0	0	0	48708000	30208000	18500000	0	0	0	2178	831	2054	13061	17775	17775			1	
AGQMVTVWAAGAGVAHSPPSTLVWK	1	Unmodified	2520.2947	0.29474882	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.793	75.55	3	1.0942E-93	42746	160513_QHF_FH_JSI10Kac_6	224.53	209.28			0.99138	1.033	19.816	4	0	Median	1.4677	1.2321	NaN	1	0	Median	0.75341	0.89406	NaN	1	0	Median	1.262	1.1935	NaN	1	0	Median	0.77877	0.83488	NaN	1	0	Median	790660000	395600000	395050000	188100000	72784000	115320000	334980000	198300000	136680000	224570000	99612000	124960000	43009000	24909000	18100000	2179	2207	2055	13062;13063;13064;13065	17776;17777;17778;17779;17780;17781;17782	17782			7	
AGQMVTVWAAGAGVAHSPPSTLVWK	1	Oxidation (M)	2536.2897	0.28966344	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		80.714	71.74	3	8.833E-15	38931	160513_QHF_FH_JSI9Kac_6	104.77	96.584			1.3021	1.19	17.607	2	1	Median	1.5786	1.3478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0741	1.0507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91694000	40805000	50889000	50963000	19808000	31155000	0	0	0	40731000	20996000	19734000	0	0	0	2180	2207	2055	13066;13067	17783;17784	17784		1839	2	
AGQPATAFSQQDLLDGAVLYSHNGSLSPR	0	Unmodified	2999.4737	0.47371205	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		86.614	86.614	3	2.9632E-06	77310	160511_QHF_FH_JSI11i_3	58.08	45.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2181	3146	2056	13068	17785	17785			1	
AGQSAAGAAPGGGVDTR	0	Unmodified	1441.691	0.69096847	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	16.283	12.911	2	3.23E-16	10909	160511_QHF_FH_JSI11i_1	167.55	162.24			0.89731	1.0165	21.822	7	0	Median	1.6115	1.3075	NaN	1	0	Median	0.88569	1.0426	3.5855	2	0	Median	1.0801	1.0669	7.885	2	0	Median	0.69661	0.74213	13.604	2	0	Median	1530700000	735100000	795650000	423110000	144420000	278690000	336680000	184590000	152090000	457380000	224550000	232830000	313590000	181550000	132040000	2182	1192	2057	13069;13070;13071;13072;13073;13074;13075	17786;17787;17788;17789;17790;17791;17792;17793;17794;17795;17796;17797;17798;17799	17787			14	
AGQVFLEELGNHK	1	Unmodified	1440.7361	0.73612775	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	2	3	52.675	52.293	2;3	7.1275E-16	44737	160511_QHF_FH_JSI12i_3	142.83	126.89			0.79225	0.74825	43.523	7	3	Median	2.1409	1.805	NaN	1	1	Median	0.84521	1.0486	NaN	1	0	Median	0.92072	0.88368	23.527	2	0	Median	0.57125	0.59305	10.355	3	2	Median	1888100000	1066900000	821110000	93624000	33732000	59891000	178080000	76049000	102030000	603270000	322440000	280830000	1013100000	634720000	378360000	2183	933	2058	13076;13077;13078;13079;13080;13081;13082	17800;17801;17802;17803;17804;17805;17806;17807;17808;17809;17810	17808			11	
AGQVFLEELGNHKAFK	2	Acetyl (K)	1828.9472	0.94718315	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.169	67.851	3	0.0016531	37093	160513_QHF_FH_JSI11Kac_6	67.646	36.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21935000	21935000	0	0	0	0	0	0	0	21935000	21935000	0	0	0	0	2184	933	2059	13083	17811	17811	687		1	
AGQVVTIWAAGAGATHSPPTDLVWK	1	Unmodified	2532.3125	0.31250737	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.04	6.51		4	11						10	6	8	6	5	88.094	84.536	2;3;4	5.7648E-222	41361	160513_QHF_FH_JSI9Kac_6	338.06	298.55			0.81295	0.90047	25.016	25	4	Median	1.3155	1.0566	10.428	6	0	Median	0.73278	0.8794	23.992	8	3	Median	0.98829	0.95784	8.4354	6	0	Median	0.59578	0.63741	10.506	5	1	Median	10985000000	5837200000	5148300000	2273400000	952980000	1320400000	4505800000	2550300000	1955400000	1989600000	951660000	1037900000	2216800000	1382300000	834510000	2185	791	2060	13084;13085;13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108	17812;17813;17814;17815;17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872;17873;17874	17854			63	
AGQVWAPEGSTAFK	1	Unmodified	1447.7096	0.70957864	4754	Q9H6U8	ALG9	Alpha-1,2-mannosyltransferase ALG9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.663	52.277	2	0.003235	44774	160511_QHF_FH_JSI12i_2	57.019	38.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2186	4754	2061	13109	17875	17875			1	
AGRIPEQILGK	1	Unmodified	1180.6928	0.69280637	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.497	38.006	3	0.017863	31714	160511_QHF_FH_JSI10i_3	37.327	33.154			1.0975	1.0565	2.0828	2	1	Median	1.2926	1.0411	NaN	1	1	Median	0.93189	1.0722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71137000	34610000	36528000	24995000	9947400	15048000	46142000	24663000	21480000	0	0	0	0	0	0	2187	2191	2062	13110;13111	17876;17877	17876			2	
AGRPQFDDQGK	1	Unmodified	1217.5789	0.57889882	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			11.154	10.481	2;3	9.5029E-05	8009	160511_QHF_FH_JSI9i_3	68.44	62.407			1.2261	1.2018	16.098	2	0	Median	1.6313	1.3467	NaN	1	0	Median	0.92158	1.0725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133850000	59221000	74625000	69228000	29548000	39680000	64617000	29672000	34945000	0	0	0	0	0	0	2188	3516	2063	13112;13113;13114	17878;17879;17880	17880			3	
AGRPQYDTK	1	Unmodified	1034.5145	0.51450765	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				6.082	5.559	2;3	0.002361	3588	160511_QHF_FH_JSI9i_3	82.452	61.932			1.4079	1.1297	8.3917	2	0	Median	1.4079	1.1297	8.3917	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	621400000	229950000	391450000	621400000	229950000	391450000	0	0	0	0	0	0	0	0	0	2189	552	2064	13115;13116	17881;17882	17882			2	
AGSALNR	0	Unmodified	687.36639	0.36638685	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	4.9564	4.57	2	0.0060747	2445	160511_QHF_FH_JSI11i_2	94.006	31.291			1.5706	1.4146	33.726	3	3	Plateau	1.6984	1.4459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.205	1.2157	NaN	1	1	Median	0.67752	0.75392	NaN	1	1	Median	609770000	272400000	337370000	203800000	66634000	137170000	0	0	0	233630000	104360000	129280000	172330000	101410000	70918000	2190	4315	2065	13117;13118;13119;13120;13121	17883;17884;17885;17886;17887	17885			5	
AGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNK	1	Unmodified	3184.6517	0.65167642	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	88.806	88.444	3	1.2255E-07	76818	160511_QHF_FH_JSI12i_3	53.482	43.244			0.57063	1.2085	49.142	3	1	Plateau	1.3968	1.2085	NaN	1	1	Median	1.0941	1.2909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52632	0.53426	NaN	1	0	Median	60262000	30518000	29744000	13971000	3453700	10517000	17394000	7113400	10280000	0	0	0	28898000	19951000	8946900	2191	235	2066	13122;13123;13124	17888;17889;17890;17891;17892;17893	17892			6	
AGSDGESIGNCPFSQR	0	Unmodified	1680.7162	0.71619694	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.303	34.699	2	7.786E-22	31393	160511_QHF_FH_JSI12i_1	177.36	153.37			0.94753	1.0439	25.78	4	1	Median	1.7816	1.5205	NaN	1	1	Median	0.93062	1.0838	NaN	1	0	Median	0.87948	0.81793	NaN	1	0	Median	0.96475	1.0054	NaN	1	0	Median	224980000	114390000	110590000	28212000	10600000	17612000	48260000	27091000	21169000	69247000	34109000	35138000	79258000	42586000	36672000	2192	5711	2067	13125;13126;13127;13128	17894;17895;17896;17897;17898;17899	17896			6	
AGSGAGVR	0	Acetyl (Protein N-term)	715.3613	0.36130147	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		9.284	1.7826	2	0.053869	2735	160513_QHF_FH_JSI11Kac_1	41.227	26.814			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2193	2094	2068	13129	17900	17900			1	
AGSGSQVPTEPK	1	Unmodified	1156.5724	0.57241646	1374	P31431	SDC4	Syndecan-4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			13.007	12.769	2	0.00028061	10439	160511_QHF_FH_JSI10i_1	75.416	56.101			0.68266	0.79431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68266	0.79431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40004000	23608000	16397000	0	0	0	40004000	23608000	16397000	0	0	0	0	0	0	2194	1374	2069	13130	17901	17901			1	
AGSISSEEVDGSQGNMMR	0	Unmodified	1853.7884	0.7883756	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	36.937	36.528	2	9.4076E-17	33077	160511_QHF_FH_JSI12i_1	198.49	175.57			0.74278	0.83948	9.1458	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.74278	0.84169	NaN	1	1	Median	0.77056	0.73599	NaN	1	1	Median	0.70641	0.70675	NaN	1	1	Median	60830000	31395000	29435000	0	0	0	23318000	7567900	15750000	20696000	12523000	8172900	16816000	11304000	5511500	2195	3653	2070	13131;13132;13133;13134	17902;17903;17904;17905	17904			4	
AGSLELR	0	Unmodified	744.413	0.41300269	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	81.517	81.104	2	0.01496	73847	160511_QHF_FH_JSI12i_1	64.776	6.1156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63259000	63259000	0	0	0	0	14576000	14576000	0	31154000	31154000	0	17529000	17529000	0	2196	4191	2071	13135;13136;13137;13138	17906;17907;17908;17909	17907			4	
AGSLGINLVAANR	0	Unmodified	1254.7044	0.70443369	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				58.769	57.224	2	0.0039538	46961	160511_QHF_FH_JSI9i_3	63.216	38.363			1.545	1.2511	NaN	1	1	Median	1.545	1.2511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25521000	9006600	16515000	25521000	9006600	16515000	0	0	0	0	0	0	0	0	0	2197	1581	2072	13139	17910	17910			1	
AGSLILK	1	Unmodified	700.44833	0.44832557	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			42.861	41.895	2	0.029275	36843	160511_QHF_FH_JSI10i_2	52.683	1.1108			0.78469	0.93979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78469	0.93979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1405100000	777670000	627480000	0	0	0	1405100000	777670000	627480000	0	0	0	0	0	0	2198	2278	2073	13140	17911	17911			1	
AGSLKDPEIAELFFK	2	Unmodified	1663.8821	0.88212328	3237	Q7L7X3	TAOK1	Serine/threonine-protein kinase TAO1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.729	88.619	3	0.0049382	76828	160511_QHF_FH_JSI12i_3	45.33	35.273			0.64885	0.67482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64885	0.67482	NaN	1	0	Median	14445000	7552200	6892800	0	0	0	0	0	0	0	0	0	14445000	7552200	6892800	2199	3237	2074	13141	17912;17913	17912			2	
AGSNMLLIGVHGPTTPCEEVSMK	1	Unmodified	2427.1596	0.15963682	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	71.856	71.707	3	1.792E-17	63874	160511_QHF_FH_JSI11i_3	138.08	129.89			0.8832	0.85485	2.4862	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92814	0.87001	NaN	1	0	Median	0.84043	0.83995	NaN	1	0	Median	304590000	170570000	134020000	0	0	0	0	0	0	146220000	75467000	70754000	158370000	95104000	63268000	2200	512	2075	13142;13143;13144	17914;17915;17916	17914			3	
AGSPTLLNCLMYK	1	Unmodified	1466.7262	0.72615669	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.361	77.094	2	3.8479E-06	66980	160511_QHF_FH_JSI12i_3	123.51	99.908			0.87258	0.86998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87258	0.86998	NaN	1	1	Median	53855000	27858000	25997000	0	0	0	0	0	0	0	0	0	53855000	27858000	25997000	2201	3708	2076	13145	17917	17917			1	
AGSQLGPGYQHHAQPK	1	Unmodified	1674.8227	0.82265134	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			11.969	11.277	4	0.0074448	8801	160511_QHF_FH_JSI10i_3	29.341	23.436			1.0596	1.2091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0596	1.2091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35596000	16645000	18951000	0	0	0	35596000	16645000	18951000	0	0	0	0	0	0	2202	2186	2077	13146	17918	17918			1	
AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAK	1	Unmodified	3811.7634	0.76336473	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	55.011	54.404	3;4	2.3098E-55	49051	160511_QHF_FH_JSI10i_1	154.33	147.92			0.6854	0.80243	20.694	5	1	Median	1.0917	0.88109	NaN	1	0	Median	0.66471	0.78259	3.5403	2	1	Median	1.28	1.229	NaN	1	0	Median	0.6854	0.73544	NaN	1	0	Median	257850000	129910000	127940000	49619000	16020000	33599000	123980000	74501000	49479000	40348000	16278000	24070000	43905000	23111000	20794000	2203	3377	2078	13147;13148;13149;13150;13151	17919;17920;17921;17922;17923;17924;17925;17926;17927;17928	17926			10	
AGSSEEAPDYGR	0	Acetyl (Protein N-term)	1279.5317	0.53167386	4954	Q9NRG1	PRTFDC1	Phosphoribosyltransferase domain-containing protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			23.813	23.529	2	0.00014363	20602	160511_QHF_FH_JSI10i_1	85.355	68.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2204	4954	2079	13152	17929	17929			1	
AGSSESIAAFIQR	0	Unmodified	1335.6783	0.67827852	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	1	3	3							1	1	3	2	60.286	59.643	2;3	1.6863E-30	51393	160511_QHF_FH_JSI12i_3	185.96	162.11			0.96607	0.91281	33.395	6	1	Median	1.9376	1.649	NaN	1	0	Median	1.0817	1.3391	NaN	1	0	Median	0.96607	0.91281	4.8695	2	1	Median	0.69728	0.7325	9.6753	2	0	Median	501030000	252990000	248040000	83877000	30263000	53614000	79293000	37637000	41656000	145030000	83918000	61114000	192830000	101170000	91656000	2205	1585	2080	13153;13154;13155;13156;13157;13158;13159	17930;17931;17932;17933;17934;17935;17936	17935			7	
AGSSGSSSGGGGGGPGGR	0	Unmodified	1347.5763	0.57633264	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		1.3343	1.2376	2	1.3044E-06	620	160511_QHF_FH_JSI11i_1	101.39	88.763			1.3141	1.2795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3141	1.2795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14424000	6199900	8224100	0	0	0	0	0	0	14424000	6199900	8224100	0	0	0	2206	1628	2081	13160;13161;13162	17937;17938;17939	17937			3	
AGSSTPGDAPPAVAEVQGR	0	Unmodified	1765.8595	0.85949036	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	37.871	37.254	2	1.3762E-42	32932	160511_QHF_FH_JSI9i_1	257.8	217.3			1.174	1.2736	24.257	4	0	Median	1.6966	1.4195	NaN	1	0	Median	1.0668	1.2727	NaN	1	0	Median	1.2919	1.2744	NaN	1	0	Median	0.81165	0.82181	NaN	1	0	Median	677920000	318810000	359110000	146660000	55357000	91299000	221460000	106070000	115400000	178210000	82984000	95226000	131590000	74399000	57191000	2207	3290	2082	13163;13164;13165;13166;13167	17940;17941;17942;17943;17944;17945;17946;17947;17948;17949	17948			10	
AGSTSWTGFQTK	1	Unmodified	1269.599	0.59896556	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.755	38.665	2	1.1183E-10	32910	160511_QHF_FH_JSI12i_3	143.96	130.61			0.73644	0.72157	19.114	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86459	0.826	NaN	1	0	Median	0.62728	0.63035	NaN	1	0	Median	129020000	71477000	57544000	0	0	0	0	0	0	42046000	21256000	20790000	86975000	50221000	36754000	2208	5058	2083	13168;13169	17950;17951;17952	17952			3	
AGSVPSLAAGLLFGSLAGLGAYQLSQDPR	0	Unmodified	2815.4868	0.48684292	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	99.755	91.038	2;3;4	4.154E-94	52216	160513_QHF_FH_JSI9Kac_6	266.28	234.48			1.0654	1.375	19.479	5	1	Linear	1.8849	1.5963	23.794	2	1	Median	1.0018	1.1838	NaN	1	0	Median	1.6394	1.5523	17.152	2	0	Median	NaN	NaN	NaN	0	0	Median	2216200000	872000000	1344200000	234820000	83448000	151380000	1282500000	623050000	659410000	386320000	165510000	220810000	312590000	0	312590000	2209	5187	2085	13170;13171;13172;13173;13174;13175	17953;17954;17955;17956;17957;17958	17956			6	
AGTALKR	1	Acetyl (K);Acetyl (Protein N-term)	799.4552	0.45520186	1914	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	1	1	0	1			By MS/MS		12	0					1							1		34.341	25.665	2	0.040632	11678	160513_QHF_FH_JSI11Kac_2	30.612	6.6399			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2210	1914	2086	13176	17959	17959			1	
AGTDLLNFLSSFIDPK	1	Unmodified	1736.8985	0.89850163	64	CON__P81644			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5								2	3	4	103.66	103.6	2;3	3.1067E-26	90362	160511_QHF_FH_JSI12i_3	225.13	192.18		+	1.051	0.99918	29.883	9	4	Median	NaN	NaN	NaN	0	0	Median	0.80645	0.91579	37.998	2	2	Median	1.3853	1.0238	17.858	3	0	Plateau	0.74286	0.77259	26.764	4	2	Median	385520000	206890000	178640000	0	0	0	9089500	4679600	4409900	107530000	47524000	60004000	268910000	154680000	114230000	2211	64	2087	13177;13178;13179;13180;13181;13182;13183;13184;13185	17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971;17972	17971			13	
AGTDLLNFLSSFIDPKK	2	Unmodified	1864.9935	0.99346464	64	CON__P81644			yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	102.96	102.9	3	2.5524E-11	89657	160511_QHF_FH_JSI12i_3	145.33	133.28		+	1.1549	1.2314	29.121	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1449	1.3392	36.852	2	2	Median	1.5264	1.4693	NaN	1	0	Median	0.90585	0.93712	NaN	1	0	Median	468780000	207250000	261530000	0	0	0	28317000	10390000	17928000	235190000	89496000	145690000	205270000	107360000	97911000	2212	64	2088	13186;13187;13188;13189	17973;17974;17975;17976;17977;17978	17978			6	
AGTEEAIVYSDIDLK	1	Unmodified	1622.8039	0.80393254	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.629	67.32	2	1.6932E-11	60994	160511_QHF_FH_JSI10i_1	106.49	87.747			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2213	4924	2089	13190	17979	17979			1	
AGTEPSDAIR	0	Unmodified	1015.4934	0.49343786	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	17.475	13.03	2	3.7285E-14	11370	160511_QHF_FH_JSI11i_1	161.79	142.7			0.93547	0.92075	21.942	5	1	Median	NaN	NaN	NaN	0	0	Median	0.8631	1.0249	25.443	2	1	Median	1.0165	0.98901	10.114	2	0	Median	0.63375	0.68757	NaN	1	0	Median	1361800000	591830000	770000000	0	0	0	729640000	343460000	386180000	619470000	240670000	378800000	12714000	7696100	5018000	2214	2692	2090	13191;13192;13193;13194;13195;13196	17980;17981;17982;17983;17984;17985;17986	17980			7	
AGTFQAFEQFGQQLLAHGHYASPEIK	1	Unmodified	2874.4089	0.40892695	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	2	2	1	97.336	94.767	4	2.2335E-59	89998	160511_QHF_FH_JSI11i_3	210.22	203.35			0.8734	0.84601	27.022	6	1	Median	1.0545	0.84998	NaN	1	0	Median	0.68822	0.80558	6.265	2	0	Median	1.1507	1.1084	5.6533	2	1	Median	0.5264	0.53662	NaN	1	0	Median	1239600000	651830000	587810000	57619000	27346000	30273000	365240000	208490000	156750000	637770000	300210000	337560000	179010000	115780000	63229000	2215	2470	2091	13197;13198;13199;13200;13201;13202	17987;17988;17989;17990;17991;17992;17993	17987			6	
AGTGENAPWVVEDELVK	1	Unmodified	1812.8894	0.8893935	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	76.423	76.02	2	8.0434E-23	67652	160511_QHF_FH_JSI9i_1	182.02	159.78			0.79605	0.78271	22.268	6	5	Median	0.94022	0.7643	NaN	1	0	Median	0.62284	0.74054	11.198	2	2	Median	1.0807	1.0527	9.9685	2	2	Median	0.60904	0.62318	NaN	1	1	Median	373510000	217310000	156200000	55509000	26512000	28997000	138310000	87782000	50525000	114250000	59744000	54510000	65435000	43271000	22164000	2216	5330	2092	13203;13204;13205;13206;13207;13208	17994;17995;17996;17997;17998;17999;18000	18000			7	
AGTGVDNVDLEAATR	0	Unmodified	1487.7216	0.72159989	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	3	1	45.116	42.85	2	7.785E-30	38774	160511_QHF_FH_JSI12i_1	190.1	166.07			0.81872	0.83888	16.916	5	4	Median	NaN	NaN	NaN	0	0	Median	0.74107	0.88112	NaN	1	1	Median	0.83109	0.8049	20.648	3	3	Plateau	0.70459	0.75242	NaN	1	0	Median	1768900000	1018600000	750250000	0	0	0	439120000	261010000	178100000	977100000	550420000	426680000	352670000	207200000	145460000	2217	309	2093	13209;13210;13211;13212;13213	18001;18002;18003;18004;18005;18006	18003			6	
AGTGVDNVDLEAATRK	1	Unmodified	1615.8166	0.81656291	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.34	10	8	7				3	1		7	7	8	7	39.403	37.332	2;3	1.628E-97	33450	160511_QHF_FH_JSI10i_1	255.85	236.09			1.0586	1.0844	22.844	29	7	Median	1.4407	1.1833	12.639	7	2	Median	0.84814	0.98102	10.968	7	2	Median	1.1088	1.0771	15.303	8	3	Median	0.73233	0.73103	28.886	7	0	Median	12869000000	6165000000	6704200000	2024500000	739220000	1285300000	3590300000	1783400000	1806900000	4114000000	1882100000	2231900000	3140400000	1760300000	1380100000	2218	309	2094	13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242	18007;18008;18009;18010;18011;18012;18013;18014;18015;18016;18017;18018;18019;18020;18021;18022;18023;18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056	18030			49	
AGTHILCIK	1	Unmodified	1011.5535	0.55353569	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	27.75	27.277	3	0.0017374	22536	160511_QHF_FH_JSI12i_3	53.493	43.906			0.96145	0.95853	55.172	3	0	Plateau	2.9734	2.4179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9275	1.7907	NaN	1	0	Median	0.83631	0.82964	NaN	1	0	Median	349600000	122990000	226610000	26910000	9464500	17446000	0	0	0	98772000	14452000	84321000	223910000	99072000	124840000	2219	1002	2095	13243;13244;13245	18057;18058;18059	18058			3	
AGTLIMALHDSSDYLLESAK	1	Unmodified	2134.0616	0.061620564	4082	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		95.138	94.734	3	4.2312E-11	84162	160511_QHF_FH_JSI11i_3	97.69	88.758			0.85159	0.88691	11.76	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69882	0.81614	NaN	1	0	Median	1.0378	0.96381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103710000	44995000	58711000	0	0	0	25201000	15042000	10159000	78504000	29953000	48552000	0	0	0	2220	4082	2096	13246;13247	18060;18061	18060			2	
AGTLLPVIQFLQK	1	Unmodified	1426.8548	0.85478632	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	101.74	101.65	2;3	1.3389E-22	82495	160511_QHF_FH_JSI9i_3	140.24	132.33			1.1139	1.0483	36.235	7	0	Median	1.4698	1.1872	1.3073	2	0	Median	0.73861	0.84707	6.6305	2	0	Median	1.1487	1.095	6.1644	2	0	Median	0.4277	0.4308	NaN	1	0	Median	816250000	424320000	391930000	257060000	107100000	149960000	236860000	142760000	94098000	238960000	116730000	122230000	83372000	57724000	25648000	2221	2647	2097	13248;13249;13250;13251;13252;13253;13254	18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073	18073			12	
AGTLTVEELGATLTSLLAQAQAQAR	0	Unmodified	2512.3497	0.34968074	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	103.41	103.37	3	2.5765E-63	92448	160511_QHF_FH_JSI11i_3	217.42	188.3			0.98048	0.915	30.574	5	2	Median	1.7341	1.4573	NaN	1	1	Median	1.0556	1.2824	NaN	1	0	Median	0.85468	0.83453	13.02	2	1	Median	0.7389	0.74327	NaN	1	0	Median	451830000	241230000	210600000	73038000	23618000	49420000	90325000	44994000	45331000	125880000	73793000	52083000	162590000	98821000	63769000	2222	1898	2098	13255;13256;13257;13258;13259	18074;18075;18076;18077;18078;18079	18075			6	
AGTQIENIDEDFRDGLK	1	Unmodified	1919.9225	0.92248455	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.686	4	9	4							3	4	4	6	64.933	64.24	2;3	7.8277E-23	55422	160511_QHF_FH_JSI12i_3	180.14	164.75			0.72188	0.82598	48.121	16	6	Median	0.54144	0.46534	11.81	3	2	Median	0.60658	0.75129	16.241	4	3	Median	1.6996	1.7266	8.6238	4	1	Median	0.79436	0.82676	15.012	5	0	Median	3712400000	1989300000	1723100000	625760000	425440000	200320000	786850000	515610000	271230000	1022800000	353890000	668930000	1277000000	694370000	582620000	2223	361	2099	13260;13261;13262;13263;13264;13265;13266;13267;13268;13269;13270;13271;13272;13273;13274;13275;13276	18080;18081;18082;18083;18084;18085;18086;18087;18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103	18101			24	
AGTQIENIEEDFRDGLK	1	Unmodified	1933.9381	0.93813461	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	4	2	76.301	75.674	2;3	9.1095E-11	65793	160511_QHF_FH_JSI12i_3	146.58	130.7			0.79433	0.87646	31.978	7	1	Median	0.79433	0.69453	NaN	1	0	Median	0.72987	0.88677	24.365	2	0	Median	1.3806	1.3583	2.1794	2	0	Median	0.68648	0.7324	25.395	2	1	Median	1366000000	734410000	631570000	125170000	64178000	60996000	208170000	120210000	87961000	611360000	282720000	328640000	421270000	267300000	153970000	2224	1021	2100	13277;13278;13279;13280;13281;13282;13283;13284;13285	18104;18105;18106;18107;18108;18109;18110;18111;18112;18113	18113			10	
AGTQLLAGLR	0	Unmodified	998.58728	0.58727866	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							2	1		1	50.882	49.924	2	4.7501E-06	43839	160511_QHF_FH_JSI9i_2	109.44	71.278			0.92034	0.95439	29.676	4	1	Median	1.327	1.1205	3.9804	2	0	Median	0.67289	0.83615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58599	0.60212	NaN	1	1	Median	202740000	108620000	94118000	76994000	32213000	44781000	60354000	34673000	25681000	0	0	0	65389000	41732000	23656000	2225	859	2101	13286;13287;13288;13289	18114;18115;18116;18117;18118	18116			5	
AGTTTVAPSAPDISANSR	0	Unmodified	1714.8486	0.84859132	3014	Q659A1	ICE2	Little elongation complex subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			39.171	38.79	2	0.0031954	34766	160511_QHF_FH_JSI10i_1	54.343	35.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2226	3014	2102	13290	18119	18119			1	
AGTVMFEYGMR	0	Unmodified	1260.5631	0.5631141	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1	1	1	2	2	57.87	55.973	2	0.00012209	30900	160513_QHF_FH_JSI10Kac_6	93.556	79.349			1.1483	1.1595	34.471	6	1	Median	1.523	1.2944	NaN	1	0	Median	1.2907	1.5597	NaN	1	1	Median	1.1885	1.1682	16.613	2	0	Median	0.67392	0.69743	9.2615	2	0	Median	327700000	150680000	177020000	40977000	14818000	26159000	20572000	9293300	11279000	163090000	69477000	93614000	103060000	57094000	45968000	2227	2303	2103	13291;13292;13293;13294;13295;13296	18120;18121;18122;18123;18124;18125	18125			5	
AGTVVLDDVELR	0	Acetyl (Protein N-term)	1327.6983	0.69834526	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	2	1	1	86.823	86.234	2	5.4976E-12	76927	160511_QHF_FH_JSI9i_1	200.6	162.31			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2228	1254	2104	13297;13298;13299;13300;13301	18126;18127;18128;18129;18130;18131;18132;18133;18134;18135	18135			10	
AGTVVLDDVELREAQR	0	Acetyl (Protein N-term)	1811.9377	0.93774068	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	1	0	1		By MS/MS		By MS/MS	2	0		2									1		1	75.097	74.091	2	0.00050667	66002	160511_QHF_FH_JSI10i_2	67.776	53.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2229	1254	2105	13302;13303	18136;18137;18138	18138			3	
AGTYFSNQAVR	0	Unmodified	1212.5887	0.58873523	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			29.701	28.358	2	0.01448	23534	160511_QHF_FH_JSI10i_3	45.137	33.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2230	2564	2106	13304;13305	18139;18140	18139			2	
AGVAAPATQVAQVTLQSVQR	0	Unmodified	1994.0909	0.090887278	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	73.65	73.138	2;3	3.3864E-16	66175	160511_QHF_FH_JSI10i_1	169.4	153.6			1.0911	1.0314	32.111	5	5	Median	1.9259	1.5724	28.496	2	2	Median	0.76934	0.89678	0.55722	2	2	Median	1.0911	1.0314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	246790000	120650000	126140000	60549000	17194000	43356000	123370000	66119000	57254000	62870000	37337000	25533000	0	0	0	2231	2636	2107	13306;13307;13308;13309;13310;13311;13312	18141;18142;18143;18144;18145;18146;18147	18144			7	
AGVAFFHLQDYDQAR	0	Unmodified	1736.8271	0.82706802	3547	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	4	3	3	2	72.941	66.612	2;3	6.0353E-120	36565	160513_QHF_FH_JSI10Kac_6	262	227.62			1.097	1.0867	19.403	10	3	Median	1.4595	1.2119	11.833	3	2	Median	0.78835	0.92934	16.181	3	0	Median	1.2845	1.2347	14.013	2	1	Median	0.78581	0.81439	5.6742	2	0	Median	1173100000	581080000	592020000	330590000	135270000	195320000	439290000	241910000	197380000	183030000	79764000	103260000	220190000	124140000	96055000	2232	3547	2108	13313;13314;13315;13316;13317;13318;13319;13320;13321;13322;13323;13324	18148;18149;18150;18151;18152;18153;18154;18155;18156;18157;18158;18159;18160;18161;18162	18162			15	
AGVAPLQVK	1	Unmodified	881.53345	0.53345218	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.89	5	4	2			3	3	1		4	5	4	5	36.01	31.778	2	8.95E-05	27688	160511_QHF_FH_JSI9i_1	94.662	53.36			0.94993	1.0196	29.929	18	1	Median	1.5971	1.3193	21.205	4	0	Median	0.86352	1.0102	8.0022	5	0	Median	0.9748	0.95732	9.4107	4	0	Linear	0.63825	0.68673	44.217	5	1	Median	5880200000	2813500000	3066700000	1231100000	441050000	790050000	1591700000	821530000	770190000	1604700000	693570000	911100000	1452700000	857320000	595390000	2233	1192	2109	13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342	18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177;18178;18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189;18190;18191;18192	18181			30	
AGVDTSPDTQK	1	Unmodified	1117.5251	0.52513192	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	11.242	8.5648	2	1.7645E-09	7658	160511_QHF_FH_JSI10i_1	132.88	100.94			0.96236	1.0141	37.872	6	0	Median	1.6555	1.3225	NaN	1	0	Median	0.91995	1.0705	NaN	1	0	Median	1.1284	1.088	17.594	2	0	Median	0.55554	0.58288	24.364	2	0	Median	1231200000	640670000	590480000	246540000	93401000	153140000	372580000	219970000	152600000	364280000	173950000	190320000	247770000	153350000	94418000	2234	4879	2110	13343;13344;13345;13346;13347;13348	18193;18194;18195;18196;18197;18198;18199;18200;18201;18202	18199			10	
AGVEAMSK	1	Unmodified	791.38474	0.38473903	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.251	10.851	2	0.0077398	8295	160511_QHF_FH_JSI9i_1	58.596	29.258			1.0584	0.95398	79.161	4	2	Median	1.2206	1.0093	NaN	1	0	Median	1.8648	2.2204	NaN	1	1	Median	0.91782	0.90165	NaN	1	0	Median	0.30803	0.32281	NaN	1	1	Median	700970000	357640000	343330000	190140000	73929000	116210000	181890000	77155000	104730000	191630000	112910000	78719000	137310000	93647000	43664000	2235	2754	2111	13349;13350;13351;13352	18203;18204;18205;18206	18206			4	
AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAK	1	Acetyl (Protein N-term)	3509.5666	0.56662198	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			67.918	67.609	3	8.0989E-33	61183	160511_QHF_FH_JSI10i_1	122.45	117.13			0.17101	0.20093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17101	0.20093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90336000	87768000	2567600	0	0	0	90336000	87768000	2567600	0	0	0	0	0	0	2236	1712	2112	13353	18207	18207			1	
AGVENGKPTHFTVYTK	2	Unmodified	1747.8893	0.88933392	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	2	3	3	4	31.49	28.123	2;3;4	9.0908E-31	23439	160511_QHF_FH_JSI10i_3	154.46	132.62			0.78014	0.78138	31.838	12	4	Median	1.129	0.94191	23.358	2	1	Median	0.76377	0.89298	36.771	3	1	Median	0.99926	0.9742	20.313	3	1	Median	0.53203	0.54937	16.943	4	1	Median	1772100000	974860000	797290000	211760000	98368000	113390000	363610000	203140000	160470000	476830000	216100000	260730000	719950000	457240000	262710000	2237	512	2113	13354;13355;13356;13357;13358;13359;13360;13361;13362;13363;13364;13365	18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221	18211			14	
AGVENGKPTHFTVYTK	2	Acetyl (K)	1789.8999	0.89989861	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		53.024	43.86	3	0.00035532	23886	160513_QHF_FH_JSI11Kac_6	70.117	16.113			0.19979	0.19617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19979	0.19617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43849000	33069000	10781000	0	0	0	4646300	0	4646300	39203000	33069000	6134700	0	0	0	2238	512	2113	13366;13367	18222;18223	18222	256;257		2	
AGVENGKPTHFTVYTKGAGK	3	Acetyl (K)	2103.0749	0.074902863	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			44.043	35.428	4	0.023699	19618	160513_QHF_FH_JSI10Kac_6	38.453	26.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2932900	2932900	0	0	0	0	2932900	2932900	0	0	0	0	0	0	0	2239	512	2114	13368	18224	18224	256;257		1	
AGVFPYR	0	Acetyl (Protein N-term)	850.43374	0.43373813	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				60.049	58.945	1	0.01006	52406	160511_QHF_FH_JSI9i_1	48.242	24.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2240	3101	2115	13369	18225	18225			1	
AGVGEPPEPGGRPEPGPR	0	Unmodified	1754.87	0.86999547	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		26.281	25.204	3	9.0598E-06	21700	160511_QHF_FH_JSI9i_2	89.866	73.982			0.83811	1.0353	37.643	3	0	Median	1.7753	1.5099	NaN	1	0	Median	0.71159	0.85809	26.552	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130460000	66063000	64394000	55104000	23697000	31407000	75353000	42366000	32988000	0	0	0	0	0	0	2241	2588	2116	13370;13371;13372;13373	18226;18227;18228;18229	18228			3	
AGVGSVAGIIHK	1	Unmodified	1107.64	0.64004252	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.942	40.942	3	0.015555	36070	160511_QHF_FH_JSI11i_3	35.523	27.877			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2242	4945	2117	13374	18230	18230			1	
AGVIGLTQTAAR	0	Unmodified	1156.6564	0.65642086	3831	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			40.872	39.367	2	0.0048775	32861	160511_QHF_FH_JSI10i_3	68.657	56.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2243	3831	2118	13375	18231	18231			1	
AGVISAPQSHAR	0	Unmodified	1192.6313	0.63126874	332	O43426	SYNJ1	Synaptojanin-1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				13.94	13.048	3	9.9216E-05	10167	160511_QHF_FH_JSI9i_3	67.252	60.931			1.5934	1.3085	NaN	1	1	Median	1.5934	1.3085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19888000	7199300	12688000	19888000	7199300	12688000	0	0	0	0	0	0	0	0	0	2244	332	2119	13376	18232	18232			1	
AGVLAGHDNR	0	Unmodified	1008.5101	0.51009098	2032;2030;4830	P62873;P62879;Q9HAV0	GNB1;GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							4	4	4	3	7.5677	7.2506	2;3	1.1886E-45	5094	160511_QHF_FH_JSI10i_3	225.4	182.4			1.0494	1.0289	33.107	15	0	Median	1.7473	1.4342	13.187	4	0	Median	0.80017	0.94618	4.8871	4	0	Median	1.0881	1.0618	6.2538	4	0	Median	0.5402	0.5488	10.541	3	0	Median	12603000000	6398700000	6204300000	2437900000	911790000	1526100000	4758200000	2760100000	1998100000	3889400000	1794100000	2095300000	1517500000	932770000	584770000	2245	2030;2032;4830	2120	13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391	18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252;18253;18254	18241			22	
AGVLAHLEEER	0	Unmodified	1222.6306	0.63060004	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								3	2	1	36.174	35.374	2;3	3.4827E-24	29492	160511_QHF_FH_JSI10i_3	182.65	157.09			1.3721	1.3217	27.419	5	3	Median	NaN	NaN	NaN	0	0	Median	0.95922	1.0986	38.139	3	2	Plateau	1.3721	1.3217	NaN	1	0	Median	1.4876	1.4879	NaN	1	1	Median	921450000	389780000	531670000	0	0	0	581090000	257490000	323600000	235480000	95651000	139830000	104880000	36640000	68242000	2246	1436;1437	2121	13392;13393;13394;13395;13396;13397	18255;18256;18257;18258;18259;18260;18261;18262	18259			8	
AGVLAHLEEERDLK	1	Unmodified	1578.8366	0.83657007	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	3.08		1	15						1	4	8	3	2	45.629	43.955	2;3;4	2.3536E-10	36868	160511_QHF_FH_JSI10i_3	108.58	72.688			1.06	1.1086	25.657	16	1	Median	1.6093	1.3032	12.376	4	0	Median	0.90331	1.1189	26.906	7	0	Median	1.0738	1.0039	9.1116	3	0	Median	0.71551	0.74428	29.092	2	1	Median	2933000000	1396000000	1537100000	827090000	327320000	499770000	1423000000	782050000	640910000	625020000	259650000	365360000	57954000	26939000	31015000	2247	1436;1437	2122	13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414	18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273;18274;18275;18276;18277;18278;18279;18280;18281;18282;18283;18284;18285;18286;18287;18288;18289;18290;18291	18280			29	
AGVMALANLLQIQR	0	Unmodified	1496.8497	0.84971772	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	90.736	82.804	2;3	1.2792E-31	47937	160513_QHF_FH_JSI10Kac_6	218.47	195.55			1.0023	0.95578	18.5	6	0	Median	1.3841	1.1995	16.799	2	0	Median	0.72186	0.85227	14.477	2	0	Median	1.0023	0.95304	2.1397	2	0	Median	NaN	NaN	NaN	0	0	Median	555880000	296900000	258980000	123590000	49796000	73796000	349090000	203870000	145220000	83196000	43236000	39960000	0	0	0	2248	5486	2123	13415;13416;13417;13418;13419;13420;13421	18292;18293;18294;18295;18296;18297	18297			6	
AGVNFSEFTGVWK	1	Unmodified	1440.7038	0.70376498	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.84	6.11	3	5	6						5	3	7	5	4	87.054	84.7	2;3	2.7881E-82	78187	160511_QHF_FH_JSI11i_3	249.5	233.36			0.99982	1.0249	21.128	19	5	Median	1.2548	1.0792	10.511	3	0	Plateau	0.89207	1.0535	13.091	7	5	Median	1.0285	1.0718	13.109	5	0	Median	0.69681	0.74547	15.581	4	0	Median	5856000000	3016600000	2839400000	741860000	344270000	397590000	1502800000	803150000	699680000	1957900000	885030000	1072800000	1653400000	984110000	669290000	2249	503	2124	13422;13423;13424;13425;13426;13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440	18298;18299;18300;18301;18302;18303;18304;18305;18306;18307;18308;18309;18310;18311;18312;18313;18314;18315;18316;18317;18318;18319;18320;18321;18322;18323;18324;18325;18326;18327;18328;18329;18330;18331;18332;18333;18334;18335;18336;18337	18301			40	
AGVNTVTTLVENK	1	Unmodified	1344.7249	0.72489436	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	5.2	10	4				1	3			4	4	6	4	54.271	51.862	2;3	3.4713E-19	28823	160513_QHF_FH_JSI12Kac_4	181.31	142.56			0.55515	0.49428	76.94	16	10	Median	0.97833	0.79613	96.388	4	2	Median	0.39108	0.46156	60.53	3	2	Median	0.7737	0.76371	75.446	5	3	Median	0.30332	0.32678	69.198	4	3	Median	4460200000	2239900000	2220300000	1308900000	406960000	901910000	769840000	495200000	274640000	1603900000	789530000	814340000	777650000	548220000	229430000	2250	2007	2125	13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456;13457;13458	18338;18339;18340;18341;18342;18343;18344;18345;18346;18347;18348;18349;18350;18351;18352;18353;18354;18355;18356;18357;18358	18357			20	
AGVNTVTTLVENKK	2	Unmodified	1472.8199	0.81985737	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.47		8	8				2	6	8	7	10	10	5	48.246	43.192	2;3	2.199E-135	36222	160511_QHF_FH_JSI10i_3	319.46	274.09			1.0039	1.1038	32.414	28	6	Median	1.6136	1.347	29.588	6	0	Median	0.90222	1.0828	22.834	9	2	Median	1.0061	1.0099	21.217	9	3	Median	0.60603	0.6417	44.219	4	1	Median	25202000000	11734000000	13468000000	4930000000	1794900000	3135100000	7963200000	3695500000	4267600000	8921000000	4150700000	4770300000	3387500000	2092500000	1294900000	2251	2007	2126	13459;13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490	18359;18360;18361;18362;18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373;18374;18375;18376;18377;18378;18379;18380;18381;18382;18383;18384;18385;18386;18387;18388;18389;18390;18391;18392;18393;18394;18395;18396;18397;18398;18399;18400;18401;18402;18403;18404;18405;18406;18407;18408;18409;18410;18411;18412;18413;18414;18415;18416;18417;18418;18419	18376			61	
AGVPLPPNLKPAPPPTIEEK	2	Unmodified	2064.1619	0.16192696	1141	P18583	SON	Protein SON	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	69.081	68.932	3	0.0011661	61454	160511_QHF_FH_JSI11i_3	46.159	37.665			0.44336	0.441	17.858	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52841	0.50035	NaN	1	0	Median	0.372	0.38869	NaN	1	0	Median	63637000	46785000	16852000	0	0	0	0	0	0	25824000	18694000	7129600	37813000	28091000	9722400	2252	1141	2127	13491;13492	18420;18421;18422;18423	18421			4	
AGVPMEVMGLMLGEFVDDYTVR	0	Unmodified	2428.1477	0.14767515	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.75		5	3						6	4	3	4	3	102.44	98.663	2;3	3.3278E-35	52912	160513_QHF_FH_JSI9Kac_6	155.1	142.71			1.1904	1.274	22.646	13	4	Median	1.9808	1.6564	5.8402	3	1	Plateau	1.0883	1.274	7.4363	3	2	Plateau	1.1687	1.1515	9.2138	4	1	Median	0.80603	0.85567	42.286	3	0	Plateau	904680000	395350000	509330000	250330000	76647000	173680000	243060000	115120000	127940000	225350000	100030000	125320000	185950000	103550000	82401000	2253	144	2128	13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504;13505;13506	18424;18425;18426;18427;18428;18429;18430;18431;18432;18433;18434;18435	18432			11	
AGVQEFVDGLHEK	1	Unmodified	1427.7045	0.70449327	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.615	52.498	3	0.00010325	45067	160511_QHF_FH_JSI12i_3	67.115	62.117			1.0126	0.96189	9.1419	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0034	0.90168	NaN	1	0	Median	1.0219	1.0261	NaN	1	0	Median	86611000	42311000	44300000	0	0	0	0	0	0	34013000	15163000	18851000	52598000	27149000	25449000	2254	5361	2129	13507;13508	18436;18437;18438	18438			3	
AGVQSGTNALLVVK	1	Unmodified	1355.7773	0.77726428	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.67	5.91	1	1					1			1		1	1	57.913	53.373	2	4.0745E-05	47300	160511_QHF_FH_JSI9i_1	117.95	93.918			1.4472	1.438	51.835	3	1	Median	2.2998	1.8743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4472	1.438	NaN	1	0	Median	0.65495	0.68918	NaN	1	0	Median	75242000	28783000	46459000	58745000	20448000	38297000	0	0	0	3093100	911670	2181500	13404000	7423500	5980100	2255	3563	2130	13509;13510;13511	18439;18440;18441	18441			2	
AGVQSVGEK	1	Unmodified	873.4556	0.45559579	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	9.0643	8.7041	2	0.00074945	6849	160511_QHF_FH_JSI12i_1	83.948	39.256			1.4759	1.5397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4759	1.5397	NaN	1	0	Median	574750000	264750000	309990000	0	0	0	0	0	0	0	0	0	574750000	264750000	309990000	2256	3341	2131	13512;13513	18442;18443	18443			2	
AGVSFSGHR	0	Acetyl (Protein N-term)	958.46208	0.46207815	2749	Q16643	DBN1	Drebrin	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	24.148	23.287	2	0.0012562	19332	160511_QHF_FH_JSI11i_2	67.169	49.784			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2257	2749	2132	13514;13515;13516	18444;18445;18446	18446			3	
AGVSISVVHGNLSEEAAK	1	Unmodified	1766.9163	0.91627696	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	49.629	49.057	2;3	5.4956E-82	43336	160511_QHF_FH_JSI11i_3	203.89	184.32			0.80709	0.81771	23.772	8	0	Median	0.90133	0.79556	NaN	1	0	Median	0.64554	0.76996	12.394	2	0	Median	1.1324	1.0808	5.8362	3	0	Plateau	0.56889	0.5883	12.527	2	0	Median	674790000	351410000	323380000	32987000	17713000	15274000	101930000	68149000	33784000	310060000	137090000	172970000	229810000	128460000	101350000	2258	1456	2133	13517;13518;13519;13520;13521;13522;13523;13524	18447;18448;18449;18450;18451;18452;18453;18454;18455	18450			9	
AGVSQVLNR	0	Unmodified	942.52468	0.52467841	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			25.814	24.498	2	0.00016949	20177	160511_QHF_FH_JSI10i_3	87.639	53.253			1.1577	1.1221	30.727	2	0	Median	1.6974	1.3944	NaN	1	0	Median	0.78962	0.90294	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68863000	31542000	37321000	40245000	13647000	26598000	28619000	17895000	10724000	0	0	0	0	0	0	2259	1366	2134	13525;13526	18456	18456			1	
AGVSTNISTK	1	Unmodified	976.51892	0.51892433	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.457	15.984	2	0.00026123	13718	160511_QHF_FH_JSI12i_1	93.556	93.556			1.2558	1.3171	39.073	4	0	Median	1.6845	1.3701	NaN	1	0	Median	1.2304	1.4256	NaN	1	0	Median	1.2816	1.2662	NaN	1	0	Median	0.61677	0.62288	NaN	1	0	Median	716860000	329070000	387790000	182740000	66191000	116550000	206720000	102230000	104490000	196960000	77093000	119870000	130440000	83559000	46884000	2260	1790	2135	13527;13528;13529;13530	18457;18458;18459;18460;18461	18459			5	
AGVSVKPFQVK	2	Unmodified	1158.6761	0.67609367	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.11	37.328	3	0.0046277	30477	160511_QHF_FH_JSI9i_3	46.706	20.663			1.0276	0.99184	12.244	4	0	Median	1.4627	1.1819	NaN	1	0	Median	0.78553	0.90966	NaN	1	0	Median	1.1738	1.0596	NaN	1	0	Median	0.89963	0.92841	NaN	1	0	Median	217850000	118570000	99279000	47889000	21164000	26725000	42317000	26776000	15540000	52666000	24003000	28663000	74980000	46629000	28351000	2261	2197	2136	13531;13532;13533;13534	18462;18463;18464;18465;18466	18465			5	
AGVSVYGIVK	1	Unmodified	991.57023	0.57023162	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.36	6.49	3	4	4				4	5	5	7	7	7	4	56.689	50.783	2	5.7505E-19	45739	160511_QHF_FH_JSI10i_1	175.44	137.72			1.0562	1.0868	24.974	24	5	Median	1.3233	1.1363	22.143	7	2	Median	0.9061	1.0789	26.834	7	1	Median	1.1669	1.1747	24.129	6	1	Median	0.78327	0.75245	7.6563	4	1	Linear	3336300000	1672700000	1663600000	655240000	282920000	372320000	917790000	492630000	425160000	1197200000	562820000	634370000	566080000	334380000	231700000	2262	4027	2137	13535;13536;13537;13538;13539;13540;13541;13542;13543;13544;13545;13546;13547;13548;13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559	18467;18468;18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486;18487;18488;18489;18490;18491;18492;18493;18494;18495;18496;18497;18498;18499;18500;18501;18502;18503;18504	18481			36	
AGVSVYGIVKDSEDIYNLK	2	Unmodified	2069.0681	0.06808615	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	90.358	90.292	3	0.0010688	78460	160511_QHF_FH_JSI12i_3	54.103	35.319			0.75643	0.7941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75643	0.7941	NaN	1	1	Median	13827000	8844900	4981800	0	0	0	0	0	0	0	0	0	13827000	8844900	4981800	2263	4027	2138	13560	18505	18505			1	
AGVTAHTQVLAEER	0	Unmodified	1480.7634	0.76340513	2372	Q13214	SEMA3B	Semaphorin-3B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	24.095	24.082	3	0.003727	19952	160511_QHF_FH_JSI12i_3	45.33	31.366			1.4736	1.3782	25.728	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8263	1.6532	NaN	1	1	Median	1.189	1.149	NaN	1	1	Median	72988000	26158000	46830000	0	0	0	0	0	0	40383000	12498000	27885000	32605000	13661000	18945000	2264	2372	2139	13561;13562	18506;18507;18508	18508			3	
AGVVANDAGDRVTPAVVAYSENEEIVGLAAK	1	Unmodified	3084.5728	0.5727574	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	84.613	84.275	3	7.1103E-17	75263	160511_QHF_FH_JSI11i_3	93.411	87.116			0.97313	1.0066	11.391	4	2	Median	1.3264	1.1228	NaN	1	1	Median	0.79018	0.96598	NaN	1	0	Median	1.1423	1.0489	NaN	1	0	Median	0.82899	0.86181	NaN	1	1	Median	81944000	37976000	43967000	9750900	3015700	6735200	18785000	9406100	9378800	38937000	13667000	25270000	14471000	11888000	2583400	2265	2291	2140	13563;13564;13565;13566;13567;13568	18509;18510;18511;18512;18513;18514;18515;18516;18517;18518	18509			10	
AGVVGPELHEQLLSAEK	1	Unmodified	1775.9418	0.94176342	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	5	2	56.928	56.237	2;3	7.2561E-11	48618	160511_QHF_FH_JSI11i_2	105.65	86.406			1.08	1.0268	19.111	8	2	Median	1.2427	1.0588	21.516	2	1	Median	0.77631	0.96107	NaN	1	0	Median	1.1418	1.1023	13.128	3	1	Plateau	0.78314	0.84191	1.4127	2	0	Median	822260000	439100000	383160000	105930000	54659000	51269000	22277000	11116000	11161000	375390000	190870000	184520000	318660000	182450000	136210000	2266	2636	2141	13569;13570;13571;13572;13573;13574;13575;13576;13577;13578	18519;18520;18521;18522;18523;18524;18525;18526;18527	18523			8	
AGVVKTMTGGR	1	Acetyl (K)	1117.5914	0.59137776	783	P01100	FOS	Proto-oncogene c-Fos	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		36.362	26.479	2	0.0050266	15541	160513_QHF_FH_JSI11Kac_5	71.349	45.612			3.0977	2.9172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0977	2.9172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1452600	112030	1340600	0	0	0	0	0	0	1452600	112030	1340600	0	0	0	2267	783	2142	13579	18528	18528	409		1	
AGVVNGTGAPGQSPGAGR	0	Unmodified	1551.7754	0.7753668	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		20.328	19.687	2	4.5417E-16	16863	160511_QHF_FH_JSI10i_1	116.51	91.735			2.7714	2.4391	21.226	2	1	Median	2.664	2.0992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8831	2.8341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70748000	19959000	50789000	25795000	5586000	20209000	0	0	0	44953000	14373000	30580000	0	0	0	2268	2389	2143	13580;13581;13582	18529;18530;18531	18530			2	
AGVVTPGITEDQLWR	0	Unmodified	1640.8522	0.85222014	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	73.61	73.084	2	0.00019067	66464	160511_QHF_FH_JSI11i_1	89.548	43.575			0.81937	0.92029	13.261	5	4	Median	NaN	NaN	NaN	0	0	Median	0.78565	0.93855	2.778	2	2	Median	0.91442	0.90299	8.5567	2	1	Median	0.61836	0.69886	NaN	1	1	Median	291730000	165180000	126550000	0	0	0	123210000	72903000	50305000	132320000	70449000	61871000	36204000	21828000	14377000	2269	4503	2144	13583;13584;13585;13586;13587	18532;18533;18534;18535;18536;18537	18532			6	
AGVYPEK	1	Unmodified	762.3912	0.39120462	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.834	11.431	2	0.014494	9017	160511_QHF_FH_JSI11i_1	66.138	49.433			0.91227	0.97245	48.735	4	1	Median	2.1543	1.7435	NaN	1	1	Median	0.76963	0.89177	NaN	1	0	Median	1.0813	1.0604	NaN	1	0	Median	0.49981	0.53517	NaN	1	0	Median	1092800000	565780000	527050000	267340000	93662000	173680000	310590000	166630000	143960000	246540000	120430000	126110000	268360000	185050000	83303000	2270	1711	2145	13588;13589;13590;13591	18538;18539;18540;18541	18538			4	
AGWLATEAQVTQELK	1	Unmodified	1643.8519	0.85188578	4743	Q9H6E5	TUT1	Speckle targeted PIP5K1A-regulated poly(A) polymerase	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	76.974	76.698	2	1.3088E-11	66597	160511_QHF_FH_JSI12i_3	108.7	93.157			0.76847	0.83607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76847	0.83607	NaN	1	1	Median	9399100	5464400	3934600	0	0	0	0	0	0	0	0	0	9399100	5464400	3934600	2271	4743	2146	13592;13593	18542;18543	18543			2	
AGWNAYIDNLMADGTCQDAAIVGYK	1	Acetyl (Protein N-term)	2758.2367	0.23670117	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	102.43	102.34	2;3	1.0098E-106	93161	160511_QHF_FH_JSI10i_1	289.53	282.3			1.4091	1.1967	14.992	5	0	Median	1.4091	1.153	NaN	1	0	Median	1.0053	1.1967	NaN	1	0	Median	1.3386	1.2951	22.558	2	0	Median	1.4376	1.4911	NaN	1	0	Median	2283000000	1114800000	1168200000	124100000	54732000	69366000	809200000	426790000	382410000	711050000	364070000	346980000	638670000	269260000	369410000	2272	876	2147	13594;13595;13596;13597;13598;13599;13600	18544;18545;18546;18547;18548;18549	18548			6	
AGWNELLIASFSHR	0	Unmodified	1599.8158	0.81577505	1310	P28702	RXRB	Retinoic acid receptor RXR-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	86.4	81.983	3	3.3164E-05	40363	160513_QHF_FH_JSI12Kac_6	90.707	57.434			1.1584	1.1997	32.944	8	1	Median	1.9921	1.6642	18.887	2	0	Median	1.2296	1.4433	29.828	2	0	Median	1.1566	1.0958	0.54966	2	0	Median	0.84481	0.90598	43.393	2	1	Median	774690000	381440000	393240000	143590000	52873000	90718000	367240000	189970000	177260000	149040000	73041000	75997000	114820000	65557000	49265000	2273	1310	2148	13601;13602;13603;13604;13605;13606;13607;13608;13609	18550;18551;18552;18553;18554;18555;18556;18557;18558;18559;18560;18561;18562;18563	18562			14	
AGYAHFLNVQGR	0	Unmodified	1331.6735	0.67346791	2945	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			50.109	41.497	3	0.00179	22895	160513_QHF_FH_JSI10Kac_6	60.598	49.743			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2274	2945	2149	13610	18564	18564			1	
AGYEYVSPEQLAGFDK	1	Acetyl (Protein N-term)	1814.8363	0.8362953	4585	Q9C0D9	EPT1	Ethanolaminephosphotransferase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			92.727	92.334	2	7.5076E-06	81885	160511_QHF_FH_JSI9i_1	76.073	67.118			0.67243	0.65441	3.1776	2	0	Median	0.82119	0.66928	NaN	1	0	Median	0.55062	0.63987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84253000	44070000	40183000	35467000	17308000	18160000	48786000	26763000	22023000	0	0	0	0	0	0	2275	4585	2150	13611;13612	18565;18566;18567	18566			3	
AGYGGSHISGYATLR	0	Unmodified	1508.7372	0.73719038	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			43.161	34.543	3	0.052615	19125	160513_QHF_FH_JSI10Kac_6	17.917	14.055			0.65971	0.76314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65971	0.76314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13762000	9227900	4534200	0	0	0	13762000	9227900	4534200	0	0	0	0	0	0	2276	3200	2151	13613	18568	18568			1	
AGYIIPLQGPGLTTTESR	0	Unmodified	1872.9945	0.99452728	965	P10253	GAA	Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	79.482	78.743	2	0.0010511	71751	160511_QHF_FH_JSI11i_1	85.845	71.687			0.85302	0.90008	12.565	3	2	Plateau	1.3455	1.1562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0299	1.0013	NaN	1	1	Median	0.85302	0.90008	NaN	1	0	Median	42312000	17131000	25181000	10950000	4015500	6934500	0	0	0	14916000	4862300	10054000	16446000	8253300	8193000	2277	965	2152	13614;13615;13616	18569;18570;18571	18569			3	
AGYITPVPGGVGPMTVAMLMK	1	Unmodified	2089.0774	0.077410744	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	101.77	101.71	2;3	6.0641E-23	88458	160511_QHF_FH_JSI12i_3	174.59	153.04			0.57102	0.65541	50.013	5	1	Median	1.7127	1.4168	NaN	1	0	Median	0.57102	0.65541	NaN	1	0	Median	0.97901	0.91152	NaN	1	0	Median	0.44141	0.44886	18.55	2	1	Median	1107000000	610250000	496730000	99473000	33894000	65579000	176490000	106960000	69527000	391060000	187830000	203230000	439960000	281570000	158400000	2278	1047	2153	13617;13618;13619;13620;13621	18572;18573;18574;18575;18576;18577;18578	18578			7	
AGYPQYVSEILEK	1	Unmodified	1495.7559	0.75586013	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.72	4	6	1					1		3	3	3	3	79.708	77.874	2	1.5998E-12	67964	160511_QHF_FH_JSI12i_2	124.42	105.64			1.0432	1.0528	27.186	9	5	Median	1.4751	1.252	7.4734	3	1	Median	0.8651	1.0351	1.5955	2	1	Median	1.0432	1.0528	3.1932	3	2	Median	0.49269	0.53439	NaN	1	1	Median	1432100000	763540000	668610000	286310000	114740000	171570000	412330000	238740000	173600000	503530000	252190000	251340000	229980000	157870000	72111000	2279	1544	2154	13622;13623;13624;13625;13626;13627;13628;13629;13630;13631;13632;13633	18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599;18600;18601;18602;18603	18584			25	
AGYQDMPEYENFK	1	Unmodified	1590.6661	0.66605885	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.801	53.136	2	3.5371E-41	47726	160511_QHF_FH_JSI10i_1	207.29	193.94			1.0577	1.1408	23.491	4	0	Median	1.5693	1.2979	NaN	1	0	Median	0.94836	1.1194	NaN	1	0	Median	1.1796	1.1625	NaN	1	0	Median	0.72272	0.75727	NaN	1	0	Median	837640000	448000000	389630000	197100000	81178000	115920000	172790000	85240000	87550000	225340000	118940000	106400000	242410000	162640000	79770000	2280	2675	2155	13634;13635;13636;13637	18604;18605;18606;18607;18608;18609;18610;18611	18608			8	
AGYSQGATQYTQAQQTR	0	Unmodified	1857.8606	0.86055299	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.001	22.462	2	1.1596E-41	19462	160511_QHF_FH_JSI11i_1	247.64	229.37			1.0038	1.038	45.681	4	2	Median	2.3628	1.9301	NaN	1	1	Median	0.70035	0.78417	NaN	1	1	Median	1.4278	1.3739	NaN	1	0	Median	0.70576	0.74982	NaN	1	0	Median	92538000	44214000	48323000	17918000	3680800	14238000	18406000	10219000	8186900	20029000	9547400	10481000	36185000	20767000	15418000	2281	4161	2156	13638;13639;13640;13641	18612;18613;18614;18615;18616	18612			5	
AGYSTDESSSSSLHATR	0	Unmodified	1754.7707	0.77073493	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	3	3	16.353	15.967	2;3	2.5949E-11	12837	160511_QHF_FH_JSI12i_3	112.43	93.684			1.0384	1.0539	53.851	7	1	Median	1.8249	1.6499	NaN	1	0	Median	1.014	1.2194	NaN	1	0	Median	1.0514	1.0076	41.424	3	1	Plateau	0.47934	0.50976	8.9647	2	0	Median	422370000	209920000	212460000	47391000	17773000	29618000	42484000	20567000	21917000	187890000	88313000	99582000	144600000	83265000	61338000	2282	1726	2157	13642;13643;13644;13645;13646;13647;13648;13649;13650	18617;18618;18619;18620;18621;18622;18623;18624;18625;18626;18627;18628	18628			12	
AHAAQVTCVAASPHK	1	Unmodified	1546.7674	0.76744465	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	12.425	12.201	3;4	6.1718E-07	9694	160511_QHF_FH_JSI11i_3	121.99	110.93			1.2681	1.2916	41.654	3	2	Median	NaN	NaN	NaN	0	0	Median	0.62486	0.75629	NaN	1	1	Median	1.8331	1.718	NaN	1	1	Median	1.2681	1.2916	NaN	1	0	Median	327990000	155450000	172540000	0	0	0	85062000	47359000	37702000	105040000	47669000	57374000	137890000	60419000	77466000	2283	4355	2158	13651;13652;13653	18629;18630;18631;18632	18629			4	
AHAAVWNAQEAQADFAK	1	Unmodified	1826.87	0.86999547	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	3	3	2	47.768	47.336	2;3	4.3491E-31	41659	160511_QHF_FH_JSI11i_3	196.11	183.84			1.0267	1.0275	12.601	7	0	Median	1.2319	1.0275	NaN	1	0	Median	0.82446	1.0071	NaN	1	0	Median	1.2526	1.0604	4.9649	3	0	Plateau	0.82903	0.83587	6.5462	2	0	Median	1054200000	546850000	507370000	63706000	30857000	32849000	85986000	46584000	39402000	446290000	215230000	231060000	458240000	254180000	204050000	2284	102	2159	13654;13655;13656;13657;13658;13659;13660;13661;13662;13663	18633;18634;18635;18636;18637;18638;18639;18640;18641;18642;18643;18644;18645;18646	18636			13	
AHAFAVQQK	1	Unmodified	998.52976	0.52976379	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			8							2	2	2	2	10.575	10.262	2;3	2.1256E-05	7925	160511_QHF_FH_JSI10i_3	106.42	83.396			1.0202	1.0063	16.132	8	1	Median	1.1225	0.90474	5.0456	2	1	Median	0.92689	1.0925	3.6829	2	0	Median	1.3473	1.2587	10.582	2	0	Median	0.89984	0.89588	8.4822	2	0	Median	1112100000	590560000	521510000	68392000	34549000	33843000	192510000	106070000	86436000	270170000	122700000	147470000	581000000	327240000	253760000	2285	2636	2160	13664;13665;13666;13667;13668;13669;13670;13671	18647;18648;18649;18650;18651;18652;18653	18648			6	
AHAGGGSGGSGAGGPAGR	0	Acetyl (Protein N-term)	1421.6396	0.6396016	490	O75182	SIN3B	Paired amphipathic helix protein Sin3b	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	6.6494	6.3033	2	7.6902E-05	4296	160511_QHF_FH_JSI12i_1	70.622	55.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2286	490	2161	13672	18654	18654			1	
AHAHSLVGK	1	Unmodified	918.50355	0.50354903	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.5198	5.6154	3	0.0017474	3096	160511_QHF_FH_JSI12i_3	61.679	38.155			1.8597	1.9264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8597	1.9264	NaN	1	1	Median	457880000	164790000	293090000	0	0	0	0	0	0	0	0	0	457880000	164790000	293090000	2287	2157	2162	13673	18655	18655			1	
AHAIITLGK	1	Unmodified	922.56	0.56000128	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.621	28.576	2	0.011521	23987	160511_QHF_FH_JSI12i_3	48.794	27.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2288	1542	2163	13674	18656	18656			1	
AHASPFSGALTPSAPPGPEMNR	0	Oxidation (M)	2207.043	0.042950807	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			51.964	50.398	3	0.0042084	42128	160511_QHF_FH_JSI10i_3	38.736	31.29			0.84783	0.96981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84783	0.96981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23702000	12211000	11491000	0	0	0	23702000	12211000	11491000	0	0	0	0	0	0	2289	235	2164	13675	18657	18657		102	1	
AHASPFSGALTPSAPPGPEMNR	0	Unmodified	2191.048	0.048036185	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			58.872	57.333	3	7.186E-08	48086	160511_QHF_FH_JSI10i_3	103.9	95.143			1.6033	1.5759	15.623	2	1	Median	2.1751	1.76	NaN	1	0	Median	1.1819	1.4111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128600000	56389000	72215000	36451000	10157000	26295000	92153000	46233000	45921000	0	0	0	0	0	0	2290	235	2164	13676;13677	18658;18659	18658			2	
AHATGAGPAGR	0	Unmodified	964.48388	0.48387622	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			4.57	4.69		2	4						1	4	3			4.4593	3.0608	2;3	0.001023	1862	160511_QHF_FH_JSI9i_3	66.692	49.306			0.98411	0.89953	23.653	7	0	Median	1.1333	0.99518	16.855	4	0	Median	0.55421	0.62943	32.01	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	649970000	337430000	312540000	288800000	130520000	158280000	361170000	206910000	154260000	0	0	0	0	0	0	2291	5616	2165	13678;13679;13680;13681;13682;13683;13684	18660;18661;18662;18663;18664	18662			4	
AHATLLGLANMETR	0	Unmodified	1496.7769	0.7769467	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	4	1		59.502	57.97	2;3	2.5915E-05	50785	160511_QHF_FH_JSI11i_3	82.171	65.145			1.3518	1.2456	18.204	6	6	Median	1.5349	1.2695	23.087	3	3	Median	1.0302	1.222	17.171	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	374920000	162820000	212100000	169650000	64383000	105260000	205270000	98436000	106830000	0	0	0	0	0	0	2292	3765	2166	13685;13686;13687;13688;13689;13690;13691;13692	18665;18666;18667;18668;18669;18670;18671;18672;18673	18665			9	
AHATLLGLANMETR	0	Oxidation (M)	1512.7719	0.77186132	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			46.208	44.646	3	0.018232	37251	160511_QHF_FH_JSI10i_3	31.914	22.626			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2293	3765	2166	13693	18674	18674		2292	1	
AHATTSNTVSK	1	Unmodified	1115.5571	0.55710075	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.59	6.6	2	8	4				1	9	8	6	9	9	8	4.809	-0.0022457	2;3	6.9678E-21	1346	160513_QHF_FH_JSI9Kac_5	174.41	141.57			1.0573	1.0235	20.892	31	3	Median	1.246	1.051	14.186	6	1	Median	0.8489	0.99261	30.469	8	1	Median	1.0786	1.0235	20.964	9	0	Median	0.97252	1.0791	14.334	8	1	Median	9825900000	4603300000	5222600000	911580000	395730000	515850000	989500000	593390000	396110000	3267300000	1485000000	1782200000	4657600000	2129200000	2528400000	2294	3085	2167	13694;13695;13696;13697;13698;13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725	18675;18676;18677;18678;18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691;18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717	18682			43	
AHAWPSPYK	1	Unmodified	1055.5189	0.51886475	3659	Q8NFJ5	GPRC5A	Retinoic acid-induced protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	26.266	25.501	2;3	0.00083486	20735	160511_QHF_FH_JSI12i_3	84.568	80.633			0.90036	0.73422	22.589	7	1	Median	0.90071	0.73816	0.75586	2	0	Median	0.55952	0.64756	4.5965	2	0	Median	0.85281	0.79251	43.224	2	1	Median	0.96872	0.97291	NaN	1	0	Median	423510000	240900000	182610000	85173000	47486000	37688000	98662000	63922000	34740000	77816000	39679000	38137000	161860000	89816000	72042000	2295	3659	2168	13726;13727;13728;13729;13730;13731;13732;13733	18718;18719;18720;18721;18722;18723;18724;18725	18725			8	
AHDGGIYAISWSPDSTHLLSASGDK	1	Unmodified	2584.2194	0.21939485	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		2	6						4	1	2	5	4	76.906	73.922	3;4	1.3308E-42	38918	160513_QHF_FH_JSI10Kac_6	169.6	156.14			1.1534	1.1273	12.997	12	5	Median	1.1992	1.033	NaN	1	0	Median	0.89357	1.0829	14.207	2	0	Median	1.2703	1.2153	13.163	5	2	Median	1.033	1.0499	7.6409	4	3	Median	1167300000	532500000	634800000	52493000	20914000	31579000	120180000	62545000	57633000	321650000	128290000	193360000	672980000	320760000	352220000	2296	472	2169	13734;13735;13736;13737;13738;13739;13740;13741;13742;13743;13744;13745	18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738;18739;18740	18740			13	
AHEILPNLVCCSAK	1	Unmodified	1610.7909	0.79088221	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	1	5	4	52.272	51.846	2;3	5.7366E-10	44230	160511_QHF_FH_JSI12i_3	150.06	139.82			0.80901	0.77248	24.493	9	6	Median	NaN	NaN	NaN	0	0	Median	0.59172	0.72729	NaN	1	0	Median	0.79476	0.76241	12.188	5	5	Median	1.2892	1.3027	17.378	3	1	Plateau	1620100000	803800000	816340000	0	0	0	34403000	21851000	12553000	754040000	440690000	313350000	831690000	341260000	490430000	2297	1721	2170	13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756	18741;18742;18743;18744;18745;18746;18747;18748;18749;18750;18751;18752;18753;18754;18755	18752			15	
AHESVVK	1	Unmodified	768.413	0.41300269	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.54		4						3	4	2	3	3	3	4.9335	-0.53003	2	8.4982E-05	1481	160513_QHF_FH_JSI9Kac_6	121.29	82.074			0.89218	1.0193	18.834	11	1	Median	1.1125	0.92691	22.025	2	0	Median	0.8536	1.0284	27.883	3	1	Median	1.0067	1.0193	13.901	3	0	Median	0.98482	1.0813	20.715	3	0	Plateau	5621700000	2756300000	2865400000	968700000	421040000	547660000	1280000000	654310000	625640000	2120200000	1073400000	1046800000	1252800000	607480000	645350000	2298	1026	2171	13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767	18756;18757;18758;18759;18760;18761;18762;18763;18764;18765;18766;18767;18768;18769;18770;18771	18769			16	
AHETAFLSWFR	0	Unmodified	1363.6673	0.6673199	5083	Q9NX00	TMEM160	Transmembrane protein 160	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		77.032	77.032	3	0.017879	68783	160511_QHF_FH_JSI11i_3	24.696	17.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2299	5083	2172	13768	18772	18772			1	
AHEVGAQGGPPVAQVEQDLPISR	0	Unmodified	2354.1979	0.19787154	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	66.363	65.845	3	9.0605E-12	58409	160511_QHF_FH_JSI11i_3	93.388	85.395			0.88341	0.86885	14.116	5	3	Median	0.88341	0.79243	NaN	1	0	Median	0.70913	0.86885	NaN	1	1	Median	0.85592	0.82335	19.431	2	1	Median	0.97298	1.0268	NaN	1	1	Median	264010000	151260000	112750000	46739000	22911000	23828000	41863000	23940000	17923000	128300000	82683000	45620000	47105000	21725000	25380000	2300	2557	2173	13769;13770;13771;13772;13773	18773;18774;18775;18776;18777	18773			5	
AHEWMFPV	0	Unmodified	1015.4586	0.45857268	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.961	75.114	2	0.015893	66788	160511_QHF_FH_JSI10i_2	50.039	46.293			1.0152	1.0451	6.8125	4	0	Median	1.2077	1.035	NaN	1	0	Median	0.77036	0.94067	NaN	1	0	Median	1.0601	1.0553	NaN	1	0	Median	0.9722	1.1063	NaN	1	0	Median	151040000	73060000	77982000	20351000	8942400	11409000	39192000	25088000	14105000	56479000	22348000	34131000	35020000	16682000	18338000	2301	286	2174	13774;13775;13776;13777	18778;18779;18780;18781;18782;18783	18782			6	
AHFGLPSVEAEDK	1	Unmodified	1398.6779	0.67794416	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		10	5							3	3	5	4	47.036	46.411	2;3	8.422E-06	40984	160511_QHF_FH_JSI10i_2	93.011	87.169			1.2356	1.1257	91.223	14	10	Median	1.2356	1.196	22.519	3	2	Plateau	0.74381	0.92597	2.4315	2	0	Median	1.5657	1.5844	75.313	5	5	Median	5.902	5.9487	104.46	4	3	Median	3612200000	654380000	2957800000	97555000	39375000	58179000	107700000	59162000	48538000	891900000	227480000	664420000	2515000000	328370000	2186700000	2302	4524	2175	13778;13779;13780;13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792	18784;18785;18786;18787;18788;18789;18790;18791;18792;18793;18794;18795;18796;18797;18798;18799;18800;18801;18802	18796			19	
AHFIMDDPAGNSYLQNVYAPEDDPEMK	1	Unmodified	3066.3375	0.33753743	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.697	82.593	3	1.1004E-25	71724	160511_QHF_FH_JSI12i_3	128.07	128.07			1.2671	1.2192	5.116	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3607	1.2641	NaN	1	1	Median	1.1799	1.1759	NaN	1	0	Median	92832000	37769000	55062000	0	0	0	0	0	0	31523000	8893100	22630000	61309000	28876000	32433000	2303	498	2176	13793;13794	18803;18804;18805;18806	18806			4	
AHFPGPVTR	0	Unmodified	980.5192	0.5191991	3825	Q8WZA9	IRGQ	Immunity-related GTPase family Q protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			21.898	20.661	3	0.0013161	16926	160511_QHF_FH_JSI10i_3	55.549	44.676			0.8869	0.85109	8.2501	2	0	Median	1.1098	0.90221	NaN	1	0	Median	0.70878	0.80286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50123000	25895000	24228000	26841000	12780000	14061000	23282000	13115000	10167000	0	0	0	0	0	0	2304	3825	2177	13795;13796	18807;18808;18809	18808			3	
AHFQNFPNGVTDFIK	1	Unmodified	1733.8526	0.85255449	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							4	6	3	2	74.123	73.295	2;3	1.9809E-65	63407	160511_QHF_FH_JSI12i_3	231.67	216.13			1.0013	1.0386	11.813	14	3	Median	1.245	1.0622	11.248	4	1	Median	0.86614	1.0411	17.361	5	2	Median	1.0871	1.0362	7.6048	3	0	Median	0.98058	0.99572	1.1819	2	0	Median	2630500000	1250600000	1379800000	230010000	108460000	121550000	414830000	212510000	202320000	828700000	370380000	458320000	1156900000	559290000	597630000	2305	3914	2178	13797;13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809;13810;13811	18810;18811;18812;18813;18814;18815;18816;18817;18818;18819;18820;18821;18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832;18833;18834;18835;18836	18835			26	
AHFTIWDK	1	Unmodified	1016.508	0.50796571	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	48.468	43.873	3	0.0015633	37217	160511_QHF_FH_JSI12i_3	61.999	53.136			1.1652	1.1391	15.041	7	0	Median	1.5378	1.2628	14.574	2	0	Median	0.98365	1.1268	NaN	1	0	Median	1.0991	1.0519	23.407	2	0	Median	1.0833	1.1384	16.072	2	0	Median	547930000	253200000	294730000	62955000	24552000	38403000	111640000	64936000	46707000	156470000	56830000	99640000	216860000	106880000	109980000	2306	5128	2179	13812;13813;13814;13815;13816;13817;13818	18837;18838;18839;18840;18841;18842;18843;18844;18845;18846;18847;18848;18849;18850	18847			14	
AHFWTWTNSWENFR	0	Unmodified	1880.8383	0.83830141	1412	P34059	GALNS	N-acetylgalactosamine-6-sulfatase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.15	76.557	3	1.2441E-07	42322	160513_QHF_FH_JSI10Kac_6	109	104.75			0.97902	1.156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97902	1.156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168450000	98273000	70173000	0	0	0	168450000	98273000	70173000	0	0	0	0	0	0	2307	1412	2180	13819	18851;18852	18852			2	
AHGFTFTR	0	Unmodified	935.46135	0.46134987	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	9.5	6.5			3						3	2	2	1	1	26.739	22.05	3	0.0051757	17635	160511_QHF_FH_JSI9i_3	36.57	27.747			0.86687	0.91195	9.4879	6	0	Median	1.2048	1.0126	13.064	2	0	Median	0.77474	0.90924	6.2762	2	0	Median	0.90249	0.85288	NaN	1	0	Median	0.83266	0.90079	NaN	1	0	Median	233010000	113620000	119390000	113490000	50730000	62765000	90955000	46639000	44317000	23447000	13592000	9855300	5108300	2657000	2451300	2308	903	2181	13820;13821;13822;13823;13824;13825	18853;18854;18855;18856	18853			4	
AHGGYSVFAGVGER	0	Unmodified	1405.6739	0.67386184	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.6		2	5						9	4	6	3	3	44.306	38.892	2;3	3.0917E-23	31920	160511_QHF_FH_JSI9i_3	183.33	172.12			1.0279	1.0664	7.5605	13	2	Median	1.2478	0.98442	7.2928	4	1	Linear	0.93357	1.1118	4.0159	4	1	Median	1.1795	1.1297	9.142	2	0	Median	0.9651	1.0254	6.7679	3	0	Median	3244300000	1428500000	1815800000	2394400000	1071200000	1323200000	595720000	234680000	361040000	154030000	66205000	87829000	100120000	56488000	43636000	2309	851	2182	13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837;13838;13839;13840;13841	18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870;18871;18872;18873;18874;18875;18876;18877;18878	18865			22	
AHGILAR	0	Unmodified	736.43441	0.43440684	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	6.2683	-1.2826	2	0.036827	2113	160513_QHF_FH_JSI11Kac_6	58.551	9.2399			0.82311	0.89344	40.028	4	0	Median	1.1248	1.0182	NaN	1	0	Median	0.92976	1.0833	NaN	1	0	Median	0.47497	0.45006	NaN	1	0	Median	0.72869	0.78399	NaN	1	0	Median	35702000	20055000	15648000	3554100	1522900	2031100	16259000	8803300	7455300	9930200	6703900	3226300	5959400	3024600	2934800	2310	1147	2183	13842;13843;13844;13845	18879;18880	18879			2	
AHGLEVEPSALEQGFR	0	Unmodified	1738.8638	0.86384745	4397	Q9BSH5	HDHD3	Haloacid dehalogenase-like hydrolase domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		62.517	61.831	3	0.00034477	53737	160511_QHF_FH_JSI11i_2	58.885	49.097			0.79423	0.90902	17.468	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83591	1.0285	NaN	1	0	Median	0.75462	0.80339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72907000	41516000	31391000	0	0	0	33964000	20563000	13401000	38943000	20953000	17991000	0	0	0	2311	4397	2184	13846;13847	18881;18882	18881			2	
AHGLLAEENR	0	Unmodified	1108.5625	0.56252048	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.374	13.411	2	1.026E-07	10829	160511_QHF_FH_JSI11i_3	122.19	87.38			0.92009	0.88692	14.071	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86446	0.80292	NaN	1	0	Median	0.9793	0.9797	NaN	1	0	Median	206070000	102020000	104050000	0	0	0	0	0	0	115970000	65175000	50798000	90097000	36841000	53256000	2312	2587	2185	13848;13849	18883;18884;18885;18886	18884			4	
AHGMVAMVFK	1	Unmodified	1089.5463	0.54634183	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.4	6.43			3						4	4	2	1		52.013	46.088	2;3	9.1933E-05	37773	160511_QHF_FH_JSI9i_3	76.064	69.169			0.9297	0.82688	20.069	7	1	Median	0.97634	0.79196	12.02	4	0	Median	0.6666	0.78512	7.3285	2	1	Median	1.2908	1.2647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	252610000	133230000	119390000	149410000	76640000	72772000	58725000	38574000	20151000	44477000	18014000	26462000	0	0	0	2313	3282	2186	13850;13851;13852;13853;13854;13855;13856	18887;18888;18889;18890;18891;18892	18889			6	
AHGNSGMVR	0	Unmodified	927.43448	0.43448319	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.9	5.85		7	8						5	8	7	4	1	3.0803	1.2143	2;3	1.9274E-06	1136	160511_QHF_FH_JSI9i_3	93.267	82.394			1.102	1.121	24.22	19	5	Median	1.315	1.1264	18.902	7	2	Median	0.84954	0.9942	31.387	7	1	Median	1.0505	1.0205	23.313	4	2	Median	1.1956	1.2397	NaN	1	0	Median	3113200000	1472400000	1640800000	1093800000	447970000	645790000	1265700000	649060000	616680000	747370000	372800000	374570000	6337100	2596200	3740900	2314	1135	2187	13857;13858;13859;13860;13861;13862;13863;13864;13865;13866;13867;13868;13869;13870;13871;13872;13873;13874;13875;13876	18893;18894;18895;18896;18897;18898;18899;18900;18901;18902;18903;18904;18905;18906;18907;18908;18909;18910;18911;18912;18913;18914;18915;18916;18917	18904			25	
AHGPGLEGGLVGK	1	Unmodified	1190.6408	0.6407708	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	28.398	28.353	2;3	0.018412	23801	160511_QHF_FH_JSI12i_3	32.263	24.038			0.7464	0.77674	7.779	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7464	0.77674	7.779	2	1	Median	217840000	123340000	94499000	0	0	0	0	0	0	0	0	0	217840000	123340000	94499000	2315	512	2188	13877;13878	18918;18919	18919			1	
AHGPGLEGGLVGKPAEFTIDTK	2	Unmodified	2193.143	0.14298243	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	62.165	61.34	3	1.5588E-13	54331	160511_QHF_FH_JSI11i_3	123.14	118.49			0.82333	0.86919	27.702	4	2	Median	NaN	NaN	NaN	0	0	Median	0.94115	1.0843	28.352	2	2	Median	0.88575	0.85145	NaN	1	0	Median	0.67983	0.68102	NaN	1	0	Median	511780000	285440000	226340000	0	0	0	109250000	57130000	52118000	242270000	135400000	106860000	160270000	92903000	67362000	2316	512	2189	13879;13880;13881;13882	18920;18921;18922;18923;18924;18925	18921			6	
AHGVSSYDTVISR	0	Unmodified	1390.6841	0.68409218	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.25	5.63			3						1	1		1	2	30.991	27.976	2;3	9.7014E-05	23446	160511_QHF_FH_JSI12i_3	73.781	55.001			1.118	1.0666	18.731	3	2	Median	1.5073	1.2448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.118	1.0666	NaN	1	0	Median	0.84863	0.85741	NaN	1	1	Median	117060000	59719000	57342000	5431400	1386600	4044800	0	0	0	55950000	27036000	28914000	55680000	31296000	24384000	2317	787	2190	13883;13884;13885;13886	18926;18927;18928;18929;18930	18930			5	
AHIAQLCEK	1	Unmodified	1068.5386	0.53861391	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		5	7						2	3	4	4	3	16.593	14.922	2;3	9.0679E-07	12103	160511_QHF_FH_JSI11i_3	135.83	121.67			1.1465	1.3797	30.552	13	3	Median	1.1659	0.98482	55.094	2	1	Median	1.2221	1.4483	5.8106	4	0	Median	1.0336	0.99639	24.579	4	1	Median	1.2606	1.3797	17.51	3	1	Median	2906600000	1438500000	1468100000	35225000	12365000	22860000	377810000	182160000	195650000	1100400000	552210000	548210000	1393200000	691810000	701360000	2318	1807;2155	2191	13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900	18931;18932;18933;18934;18935;18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946;18947	18931			16	
AHIISDQK	1	Unmodified	910.48723	0.48723027	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	7.8418	7.7161	2	0.0017591	5118	160511_QHF_FH_JSI12i_3	85.212	57.687			1.1433	1.1853	39.212	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61363	0.74681	NaN	1	0	Median	1.7343	1.6289	NaN	1	1	Median	1.1433	1.1853	NaN	1	0	Median	423080000	202740000	220340000	0	0	0	76075000	44765000	31310000	142490000	56560000	85932000	204510000	101420000	103100000	2319	2457	2192	13901;13902;13903	18948;18949	18949			2	
AHILTALAITEYK	1	Unmodified	1442.8133	0.81331543	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	3	3	2	3	70.503	65.821	2;3	5.5333E-12	35787	160513_QHF_FH_JSI10Kac_6	120.77	102.46			1.0006	0.98264	24.6	9	3	Median	1.133	0.9614	3.0909	2	0	Median	0.84841	0.98384	5.3403	2	0	Median	0.99654	0.96045	59.341	2	2	Median	1.1807	1.219	20.568	3	1	Plateau	365360000	180410000	184940000	53287000	22859000	30428000	57752000	37162000	20590000	80918000	42991000	37927000	173400000	77400000	95999000	2320	3117	2193	13904;13905;13906;13907;13908;13909;13910;13911;13912;13913;13914	18950;18951;18952;18953;18954;18955;18956;18957;18958	18957			8	
AHIPPLGLK	1	Unmodified	944.58074	0.58073672	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			42.687	41.153	3	0.015976	34170	160511_QHF_FH_JSI10i_3	24.776	10.109			0.59726	0.69318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59726	0.69318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12460000	7986200	4473900	0	0	0	12460000	7986200	4473900	0	0	0	0	0	0	2321	2755	2194	13915	18959	18959			1	
AHITINQYLQQVYEAIDSR	0	Acetyl (Protein N-term)	2303.1546	0.15460975	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	1	0	0				By MS/MS	16	0									1				1	96.88	87.438	2	1.084E-166	47757	160513_QHF_FH_JSI12Kac_6	323.37	290.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2322	2909	2195	13916	18960	18960			1	
AHIVFDFHQAADGIQEQQR	0	Unmodified	2209.0665	0.066463441	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	69.544	59.777	3	0.00087899	31299	160513_QHF_FH_JSI12Kac_6	69.605	61.215			1.2937	1.4211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2937	1.4211	NaN	1	1	Median	8142400	5395700	2746700	0	0	0	0	0	0	0	0	0	8142400	5395700	2746700	2323	1356	2196	13917	18961	18961			1	
AHKQIYYSDK	2	Acetyl (K);Acetyl (Protein N-term)	1335.6459	0.64591575	1404	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	yes	yes	1	1	0	1		By matching	By MS/MS		14	0							2				1	1		41.463	31.486	2	2.3026E-09	19094	160513_QHF_FH_JSI11Kac_4	74.162	55.49			0.54609	0.59152	33.934	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63831	0.75194	NaN	1	0	Median	0.46718	0.46533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31460000	21291000	10168000	0	0	0	12555000	7698300	4857000	18904000	13593000	5311200	0	0	0	2324	1404	2197	13918;13919	18962	18962	1362		1	
AHKSTVWQVR	1	Unmodified	1210.6571	0.65708956	4178	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.857	12.095	4	0.058902	9541	160511_QHF_FH_JSI10i_3	12.213	1.384			0.14875	0.17055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.14875	0.17055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126730000	98349000	28380000	0	0	0	126730000	98349000	28380000	0	0	0	0	0	0	2325	4178	2198	13920	18963	18963			1	
AHLALIDYLTQK	1	Unmodified	1384.7715	0.77145062	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	81.719	81.11	2;3	2.5175E-05	70224	160511_QHF_FH_JSI12i_3	88.596	75.965			1.017	1.1447	33.316	5	3	Median	1.8481	1.5339	NaN	1	1	Median	0.97288	1.1447	NaN	1	0	Median	0.78792	0.75438	NaN	1	1	Median	1.2894	1.3497	37.226	2	1	Median	109770000	49877000	59895000	16791000	7368600	9422000	17466000	8117500	9348800	18639000	9803300	8835400	56876000	24588000	32289000	2326	4137	2199	13921;13922;13923;13924;13925;13926;13927	18964;18965;18966;18967;18968;18969;18970;18971	18969			8	
AHLDNIMNELAK	1	Unmodified	1367.6867	0.68673471	5800				yes	yes	0	0	0	0			By MS/MS		3	0			2									2		35.986	35.986	2;3	0.0019175	31422	160511_QHF_FH_JSI11i_3	58.981	44.774	+		0.91639	0.85749	2.1878	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91639	0.85749	2.1878	2	0	Median	NaN	NaN	NaN	0	0	Median	931030000	453460000	477570000	0	0	0	0	0	0	931030000	453460000	477570000	0	0	0	2327	5800	2200	13928;13929	18972;18973	18973			2	
AHLGTALK	1	Unmodified	809.47594	0.4759373	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	3	4	14.002	11.382	2	0.00063796	9103	160511_QHF_FH_JSI11i_3	101.64	30.731			0.98648	0.9403	48.411	13	1	Median	1.1363	0.97721	24.369	3	0	Median	1.0944	1.2458	19.095	3	0	Plateau	0.98648	0.9403	7.5849	3	0	Median	0.85215	0.91698	92.692	4	1	Median	15581000000	7369200000	8211600000	2643700000	1003900000	1639800000	3076000000	1355700000	1720300000	3637400000	1958800000	1678600000	6223700000	3050800000	3172900000	2328	1992	2201	13930;13931;13932;13933;13934;13935;13936;13937;13938;13939;13940;13941;13942	18974;18975;18976;18977;18978;18979;18980;18981;18982;18983;18984;18985;18986;18987;18988;18989;18990;18991;18992;18993	18974			20	
AHLGTALKANPFGGASHAK	2	Acetyl (K)	1888.9908	0.9907793	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.1	47.375	4	0.023581	25586	160513_QHF_FH_JSI11Kac_6	37.672	26.727			0.10489	0.10099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10489	0.10099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9294100	8747300	546780	0	0	0	0	0	0	9294100	8747300	546780	0	0	0	2329	1992	2202	13943	18994	18994	2013;2014		1	
AHLILFK	1	Unmodified	840.52216	0.52215921	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	51.624	45.818	2;3	0.0064706	25138	160513_QHF_FH_JSI10Kac_6	54.525	54.525			1.2213	1.2274	26.819	14	7	Median	1.4108	1.1658	29.56	4	2	Median	0.80867	0.95205	28.258	4	1	Median	1.468	1.393	24.029	3	2	Plateau	1.4562	1.4718	16.915	3	2	Median	1233500000	403770000	829750000	370450000	101480000	268960000	303160000	127470000	175690000	290220000	89694000	200530000	269690000	85117000	184570000	2330	4800	2203	13944;13945;13946;13947;13948;13949;13950;13951;13952;13953;13954;13955;13956;13957	18995;18996;18997;18998;18999;19000;19001;19002;19003;19004;19005;19006;19007;19008;19009;19010;19011;19012;19013;19014;19015	19014			21	
AHLLADMAHISGLVAAK	1	Oxidation (M)	1732.9294	0.9294246	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	1	1	2	4	55.442	53.723	2;3	6.8404E-06	46142	160511_QHF_FH_JSI12i_3	92.439	80.825			0.74351	0.75791	24.506	8	3	Median	1.0565	0.87616	NaN	1	0	Median	0.71698	0.82771	NaN	1	0	Median	0.57942	0.55597	35.958	2	1	Median	0.75205	0.75425	17.658	4	2	Median	405010000	204720000	200290000	46390000	21208000	25182000	38369000	21020000	17349000	65724000	32749000	32975000	254530000	129740000	124790000	2331	1415	2204	13958;13959;13960;13961;13962;13963;13964;13965	19016;19017;19018;19019;19020;19021;19022;19023;19024	19022		1068	9	
AHLLADMAHISGLVAAK	1	Unmodified	1716.9345	0.93450998	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	3.78			39						4	16	16	5	6	80.437	78.694	2;3;4	6.476E-74	67086	160511_QHF_FH_JSI10i_3	209.99	175.61			0.90474	0.82375	37.186	32	3	Median	2.3731	1.9444	38.573	12	2	Linear	0.71028	0.83225	36.532	11	1	Median	0.86808	0.81659	27.236	3	0	Median	0.75176	0.77225	39.395	6	0	Median	7325400000	3587900000	3737500000	1055300000	384030000	671280000	1756300000	894300000	862040000	1039400000	495320000	544050000	3474400000	1814300000	1660200000	2332	1415	2204	13966;13967;13968;13969;13970;13971;13972;13973;13974;13975;13976;13977;13978;13979;13980;13981;13982;13983;13984;13985;13986;13987;13988;13989;13990;13991;13992;13993;13994;13995;13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006;14007;14008	19025;19026;19027;19028;19029;19030;19031;19032;19033;19034;19035;19036;19037;19038;19039;19040;19041;19042;19043;19044;19045;19046;19047;19048;19049;19050;19051;19052;19053;19054;19055;19056;19057;19058;19059;19060;19061;19062;19063;19064;19065;19066;19067;19068;19069;19070;19071;19072;19073;19074;19075;19076;19077;19078;19079;19080;19081;19082;19083;19084;19085;19086;19087;19088;19089;19090;19091;19092;19093;19094;19095;19096;19097;19098;19099;19100;19101;19102;19103;19104;19105;19106	19057			81	
AHLMEIQVNGGTVAEK	1	Oxidation (M)	1711.8563	0.85631924	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.19		7	5					3	3	3	4	4	7	41.566	38.122	2;3	3.2833E-07	32042	160511_QHF_FH_JSI11i_3	137.16	121.96			0.91914	1.0096	24.427	16	2	Median	0.93731	0.79484	27.855	2	0	Median	0.73729	0.86421	22.254	4	0	Median	1.2911	1.2099	16.687	4	0	Median	0.91255	1.0205	23.235	6	2	Median	1758600000	889830000	868760000	623210000	312970000	310240000	158240000	89490000	68747000	321170000	152990000	168190000	655970000	334380000	321590000	2333	1484	2205	14009;14010;14011;14012;14013;14014;14015;14016;14017;14018;14019;14020;14021;14022;14023;14024;14025;14026	19107;19108;19109;19110;19111;19112;19113;19114;19115;19116;19117;19118;19119;19120;19121;19122;19123;19124;19125;19126;19127;19128;19129	19107		1163	20	
AHLMEIQVNGGTVAEK	1	Unmodified	1695.8614	0.86140461	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.99		8	13						8	5	7	9	8	51.009	48.024	2;3	4.5053E-159	41290	160511_QHF_FH_JSI12i_3	297.64	278.51			0.86426	0.89367	52.444	25	16	Median	1.1686	0.99834	111.62	4	3	Median	0.78807	0.936	15.437	5	5	Median	0.89812	0.89191	49.439	8	4	Median	0.87646	0.90735	19.288	8	4	Median	8882800000	4950300000	3932500000	1344400000	973190000	371260000	990800000	565920000	424880000	3012500000	1549400000	1463000000	3535100000	1861800000	1673400000	2334	1484	2205	14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046;14047;14048;14049;14050;14051;14052;14053;14054;14055	19130;19131;19132;19133;19134;19135;19136;19137;19138;19139;19140;19141;19142;19143;19144;19145;19146;19147;19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171	19160			42	
AHLQGPAGASVAGPQTSEAFAITVR	0	Unmodified	2435.2557	0.25572077	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							1	2		1	66.834	65.937	3	2.574E-11	55179	160511_QHF_FH_JSI10i_3	92.426	87.876			0.73543	0.66352	45.006	3	2	Plateau	0.73543	0.62308	NaN	1	1	Median	0.71321	0.84116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4808	1.5097	NaN	1	1	Median	93496000	51578000	41917000	50985000	32306000	18679000	26249000	13919000	12330000	0	0	0	16262000	5352900	10909000	2335	3146	2206	14056;14057;14058;14059	19172;19173;19174;19175;19176	19173			5	
AHLQKLMSDK	2	Acetyl (K)	1211.6332	0.63324258	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.468	29.924	2	0.027502	16532	160513_QHF_FH_JSI11Kac_6	57.859	30.555			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2397600	2397600	0	0	0	0	0	0	0	2397600	2397600	0	0	0	0	2336	1519	2207	14060	19177	19177			1	
AHLSENELEALEK	1	Unmodified	1481.7362	0.73618733	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	47.799	47.015	2	6.0832E-05	40329	160511_QHF_FH_JSI11i_2	107.06	90.384			1.0851	1.0149	8.7059	2	1	Median	1.1293	0.95433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0427	1.0794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45539000	19572000	25967000	10139000	4028200	6110400	0	0	0	35401000	15544000	19857000	0	0	0	2337	2140	2208	14061;14062;14063;14064;14065;14066	19178;19179;19180;19181;19182;19183	19180			6	
AHLTFPK	1	Unmodified	812.45447	0.45447358	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	23.862	23.853	2	0.042889	20309	160511_QHF_FH_JSI11i_3	45.952	24.181			0.73332	0.70636	11.758	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70053	0.65001	NaN	1	0	Median	0.76764	0.76759	NaN	1	0	Median	247620000	121630000	125990000	0	0	0	0	0	0	88834000	40746000	48088000	158790000	80881000	77907000	2338	1988	2209	14067;14068	19184	19184			1	
AHLTNQYMQR	0	Unmodified	1260.6033	0.60333943	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	1	2	16.963	16.264	2;3	1.2297E-10	13091	160511_QHF_FH_JSI9i_3	141.2	117.24			1.0448	1.0233	14.209	6	1	Median	1.3072	1.058	0.4315	2	0	Median	0.82014	0.9451	6.9574	2	0	Median	0.8949	0.82257	NaN	1	0	Median	1.2199	1.2371	NaN	1	1	Median	937120000	473320000	463800000	452090000	180680000	271410000	387010000	240540000	146470000	71895000	39335000	32560000	26128000	12765000	13363000	2339	2385	2210	14069;14070;14071;14072;14073;14074;14075;14076	19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196	19194			12	
AHLTNQYMQR	0	Oxidation (M)	1276.5983	0.59825406	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			3							2	1			17.408	16.307	3	0.0014902	13213	160511_QHF_FH_JSI10i_3	54.066	36.007			0.89177	1.0032	47.935	3	1	Plateau	1.7485	1.4341	61.189	2	1	Median	0.85697	1.0032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165370000	81114000	84258000	88849000	34824000	54025000	76523000	46291000	30233000	0	0	0	0	0	0	2340	2385	2210	14077;14078;14079	19197;19198	19197		1939	2	
AHLTVGQAAAGGSGNLLTER	0	Unmodified	1921.997	0.99698689	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			48.977	47.389	3	1.5869E-11	38787	160511_QHF_FH_JSI9i_3	132.74	114.37			0.86312	0.8458	1.4778	2	0	Median	1.0514	0.83701	NaN	1	0	Median	0.70856	0.85468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142030000	85445000	56582000	52313000	26828000	25486000	89713000	58617000	31096000	0	0	0	0	0	0	2341	4330	2211	14080;14081	19199;19200;19201	19201			3	
AHLVAVFNEYQR	0	Unmodified	1445.7415	0.74154747	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	5	4	4	4	55.179	49.133	2;3	7.9164E-24	26863	160513_QHF_FH_JSI10Kac_6	161.63	142.89			0.98457	0.97374	7.4473	15	2	Median	1.159	0.96671	7.9487	4	0	Median	0.81071	0.95373	12.256	4	0	Median	1.0131	0.95987	1.5311	4	0	Median	0.92953	0.9981	1.774	3	2	Median	2946100000	1520000000	1426000000	832150000	367490000	464670000	1370500000	790020000	580510000	537320000	263250000	274070000	206050000	99287000	106760000	2342	1723	2212	14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092;14093;14094;14095;14096;14097;14098	19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230;19231;19232;19233	19233			32	
AHMAVLSIQDLTVK	1	Unmodified	1524.8334	0.83339895	3575	Q8N9B5	JMY	Junction-mediating and -regulatory protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	71.633	71.336	3	0.019706	61817	160511_QHF_FH_JSI12i_3	49.333	41.609			0.92874	0.95972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92874	0.95972	NaN	1	0	Median	24041000	11465000	12576000	0	0	0	0	0	0	0	0	0	24041000	11465000	12576000	2343	3575	2213	14099	19234	19234			0	
AHMGMFTELAILYSK	1	Unmodified	1710.8473	0.84733445	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.42		3	13						10	6	6	6	8	93.352	89.743	2;3	2.1228E-23	43596	160513_QHF_FH_JSI11Kac_6	178.32	153.11			0.96003	0.8844	22.356	23	5	Median	1.0468	0.87999	19.945	6	2	Median	0.71637	0.84426	37.239	5	2	Median	1.2218	1.1259	13.422	5	0	Median	0.85337	0.85843	12.947	7	1	Median	3387500000	1772200000	1615300000	519980000	233930000	286050000	624960000	376880000	248090000	1201000000	555410000	645620000	1041500000	606010000	435530000	2344	1807;2155	2214	14100;14101;14102;14103;14104;14105;14106;14107;14108;14109;14110;14111;14112;14113;14114;14115;14116;14117;14118;14119;14120;14121;14122;14123;14124;14125	19235;19236;19237;19238;19239;19240;19241;19242;19243;19244;19245;19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266;19267;19268;19269	19243			32	
AHMGMFTELAILYSK	1	Oxidation (M)	1726.8422	0.84224908	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	2	1	3	3	82.465	76.768	3	3.9463E-05	73557	160511_QHF_FH_JSI12i_3	95.651	83.959			1.1321	1.1894	25.621	9	3	Median	1.516	1.2819	46.974	2	0	Median	1.2062	1.4468	NaN	1	1	Median	1.4764	1.4402	21.786	3	2	Median	0.92253	0.9818	16.63	3	0	Median	639500000	295290000	344200000	274110000	121690000	152420000	124460000	54123000	70334000	71073000	32308000	38765000	169850000	87171000	82684000	2345	1807;2155	2214	14126;14127;14128;14129;14130;14131;14132;14133;14134	19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282	19276		1497;1498	13	
AHMGMFTELAILYSK	1	2 Oxidation (M)	1742.8372	0.8371637	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	2	0				By MS/MS	16	0									1				1	77.101	67.659	3	2.673E-06	35606	160513_QHF_FH_JSI12Kac_6	104.17	94.11			0.94379	0.9972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94379	0.9972	NaN	1	0	Median	79635000	41407000	38227000	0	0	0	0	0	0	0	0	0	79635000	41407000	38227000	2346	1807;2155	2214	14135	19283	19283		1497;1498	1	
AHMMNAIK	1	Unmodified	914.44663	0.44662778	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			7							2	1	2	2	13.589	13.211	2;3	0.00015634	10548	160511_QHF_FH_JSI11i_3	91.041	81.827			0.75957	0.75878	65.52	7	1	Median	1.9651	1.5883	113.21	2	0	Median	0.75957	0.8804	NaN	1	0	Median	0.62527	0.58438	13.891	2	0	Median	1.0582	1.0766	49.475	2	1	Median	2051000000	1163900000	887070000	215730000	71704000	144020000	123980000	71614000	52364000	595200000	329240000	265960000	1116100000	691370000	424720000	2347	4322	2215	14136;14137;14138;14139;14140;14141;14142	19284;19285;19286;19287;19288	19285			5	
AHMMNAIK	1	Oxidation (M)	930.44154	0.4415424	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			14.251	13.406	3	0.0086224	10578	160511_QHF_FH_JSI10i_3	50.127	27.236			1.096	1.3169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.096	1.3169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90623000	47431000	43192000	0	0	0	90623000	47431000	43192000	0	0	0	0	0	0	2348	4322	2215	14143	19289	19289		2452;2453	1	
AHMNSVLMGMK	1	Unmodified	1217.5719	0.57190465	5594	Q9Y3E7	CHMP3	Charged multivesicular body protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	2	2	38.994	38.296	2;3	0.00021358	32308	160511_QHF_FH_JSI12i_3	57.836	53.79			0.94826	0.95852	15.54	7	2	Median	1.5564	1.2734	NaN	1	1	Median	0.76219	0.88476	0.64976	2	1	Median	1.2885	1.1908	0.44994	2	0	Median	0.93121	0.95392	0.67982	2	0	Median	443700000	211840000	231860000	31385000	12660000	18725000	79371000	49603000	29768000	132140000	56442000	75694000	200800000	93134000	107670000	2349	5594	2216	14144;14145;14146;14147;14148;14149;14150;14151	19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301	19301			12	
AHNAFGGEGVYAIAR	0	Unmodified	1531.7532	0.75317479	3601	Q8NBP7	PCSK9	Proprotein convertase subtilisin/kexin type 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	43.853	43.611	2;3	0.0020543	37218	160511_QHF_FH_JSI12i_3	48.885	43.994			1.1346	1.0719	36.929	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82536	0.80157	41.097	2	1	Median	1.1613	1.1895	NaN	1	0	Median	212170000	118840000	93324000	0	0	0	0	0	0	145590000	81670000	63919000	66577000	37172000	29405000	2350	3601	2217	14152;14153;14154;14155;14156	19302;19303;19304;19305	19304			4	
AHNNELEPTPGNTLR	0	Unmodified	1661.8121	0.81214624	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	25.66	25.644	3	0.0011702	22036	160511_QHF_FH_JSI11i_3	53.374	46.758			0.73955	0.7276	20.608	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87664	0.84174	NaN	1	0	Median	0.62391	0.62893	NaN	1	1	Median	88066000	49204000	38862000	0	0	0	0	0	0	54846000	30125000	24721000	33220000	19079000	14141000	2351	1251	2218	14157;14158	19306;19307	19306			2	
AHPDVLTIMLQLFDEGR	0	Unmodified	1953.9982	0.99823245	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.392	92.672	3	8.4574E-06	54196	160513_QHF_FH_JSI10Kac_6	97.933	89.114			0.84604	1.0067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84604	1.0067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98584000	47163000	51421000	0	0	0	98584000	47163000	51421000	0	0	0	0	0	0	2352	4620	2219	14159	19308	19308			1	
AHPEPGTWDSFLEK	1	Unmodified	1612.7522	0.75217174	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	61.335	61.06	2;3	6.3673E-06	52658	160511_QHF_FH_JSI12i_3	134.98	121.39			0.56293	0.57452	0.69773	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56293	0.57452	0.69773	2	1	Median	310080000	209590000	100490000	0	0	0	0	0	0	0	0	0	310080000	209590000	100490000	2353	953	2220	14160;14161;14162	19309;19310;19311	19311			3	
AHPPELKK	2	Unmodified	918.5287	0.52870115	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	8.0781	7.8408	2;3	0.002131	5076	160511_QHF_FH_JSI12i_3	82.671	70.903			0.88847	0.95149	28.879	8	4	Median	1.1268	0.92966	45.726	2	1	Median	0.72962	0.85401	15.958	2	1	Median	0.82869	0.79192	55.287	2	2	Median	0.94212	0.955	1.1929	2	0	Median	3609500000	1855300000	1754200000	284040000	143980000	140060000	603450000	360380000	243070000	886410000	520940000	365470000	1835600000	829990000	1005600000	2354	37	2221	14163;14164;14165;14166;14167;14168;14169;14170	19312;19313;19314;19315;19316;19317;19318	19318			7	
AHPQGLVLVTDAIPALGLGNGR	0	Unmodified	2168.2066	0.20658574	5551	Q9Y303	AMDHD2	Putative N-acetylglucosamine-6-phosphate deacetylase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			4								2		2	98.359	98.191	3	4.401E-07	84530	160511_QHF_FH_JSI12i_3	75.55	46.969			1.0726	1.2365	25.035	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2875	1.4914	26.511	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0534	1.1189	NaN	1	1	Median	26435000	14461000	11973000	0	0	0	13618000	5443500	8174300	0	0	0	12817000	9017800	3799000	2355	5551	2222	14171;14172;14173;14174	19319;19320;19321;19322	19322			4	
AHPVFYQGTYSQALNDAK	1	Unmodified	2008.9643	0.96428978	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	2	3	1	55.925	52.108	3	6.9109E-08	45914	160511_QHF_FH_JSI11i_3	123.02	118.41			1.1177	1.0397	19.654	8	3	Median	1.2362	1.0238	5.3287	2	2	Median	1.145	1.3309	20.118	2	0	Median	1.0536	1.0169	23.23	3	1	Median	0.90178	0.91425	NaN	1	0	Median	919530000	468100000	451420000	46491000	18515000	27976000	170970000	85440000	85528000	535620000	272320000	263300000	166450000	91827000	74619000	2356	4013	2223	14175;14176;14177;14178;14179;14180;14181;14182	19323;19324;19325;19326;19327;19328;19329;19330;19331;19332;19333;19334;19335	19323			13	
AHPVFYQGTYSQALNDAKR	1	Acetyl (K)	2207.076	0.075965495	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		66.043	57.139	3	2.05E-05	31450	160513_QHF_FH_JSI10Kac_6	88.637	73.045			0.39889	0.43104	146.59	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0148	1.2153	NaN	1	0	Median	0.1568	0.15288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28030000	15084000	12945000	0	0	0	19818000	7922500	11895000	8211800	7161900	1049900	0	0	0	2357	4013	2224	14183;14184	19336;19337	19337	3030		2	
AHQANQLYPFAISLIESVR	0	Unmodified	2156.1378	0.13783747	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	92.047	84.067	3	0.0030462	45131	160513_QHF_FH_JSI12Kac_6	58.848	44.539			1.7176	1.4757	33.853	3	3	Median	1.7176	1.4757	NaN	1	1	Median	0.93055	1.0963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0118	2.1541	NaN	1	1	Median	280830000	128430000	152400000	53281000	19168000	34113000	132470000	84440000	48034000	0	0	0	95080000	24824000	70256000	2358	2517	2225	14185;14186;14187	19338;19339;19340	19339			3	
AHQDIHTQLQDVK	1	Unmodified	1531.7743	0.77430417	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.013	20.026	3	0.0022161	16303	160511_QHF_FH_JSI12i_3	49.298	36.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2359	138	2226	14188	19341	19341			1	
AHQILVLQEGK	1	Unmodified	1234.7034	0.70337105	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.51		1	4						7	1	4	4	3	38.632	34.118	2;3	1.5202E-07	28632	160511_QHF_FH_JSI12i_3	123.75	97.81			1.0366	1.0522	11.617	8	4	Median	1.1618	0.99898	NaN	1	1	Median	1.0096	1.1609	7.0428	2	2	Median	1.0883	1.0136	7.2254	2	0	Median	1.0059	1.0378	16.47	3	1	Plateau	364510000	173400000	191110000	12223000	5753000	6470200	19296000	10196000	9099500	130500000	59704000	70800000	202490000	97746000	104740000	2360	2212	2227	14189;14190;14191;14192;14193;14194;14195;14196;14197;14198;14199;14200	19342;19343;19344;19345;19346;19347;19348;19349;19350;19351;19352;19353	19349			10	
AHQITDESLESTRR	0	Unmodified	1641.8071	0.80706086	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			17.369	16.358	3	0.0073855	13231	160511_QHF_FH_JSI10i_3	40.552	14.428			0.93294	1.0451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93294	1.0451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30917000	19569000	11347000	0	0	0	30917000	19569000	11347000	0	0	0	0	0	0	2361	101	2228	14201	19354	19354			1	
AHQLVHEGYK	1	Unmodified	1180.5989	0.59890598	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	3	0			4										4	9.5155	9.613	2;3;4	0.00074291	6878	160511_QHF_FH_JSI12i_3	84.213	69.062			1.1545	1.1742	9.7809	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1545	1.1742	9.7809	4	2	Median	269140000	138510000	130640000	0	0	0	0	0	0	0	0	0	269140000	138510000	130640000	2362	160	2229	14202;14203;14204;14205	19355;19356;19357;19358;19359	19357			4	
AHQLVMEGYK	1	Unmodified	1174.5805	0.58047873	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.441	24.088	2	0.0063369	20136	160511_QHF_FH_JSI11i_2	62.463	39.035			1.4078	1.4012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4078	1.4012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42861000	11296000	31565000	0	0	0	0	0	0	42861000	11296000	31565000	0	0	0	2363	1912	2230	14206	19360	19360			1	
AHQLWLSVEALK	1	Unmodified	1393.7718	0.77178497	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	7						3	2	3	6	3	71.96	69.136	2;3	2.8723E-05	59980	160511_QHF_FH_JSI12i_3	85.845	77.958			0.9644	1.1105	37.419	11	3	Median	1.2454	1.0733	44.389	2	1	Median	1.1951	1.4118	39.259	3	0	Plateau	0.60382	0.59252	43.717	3	2	Median	1.1643	1.2005	23.239	3	0	Median	644490000	282780000	361710000	20983000	9508600	11475000	90191000	37557000	52634000	87082000	50558000	36525000	446230000	185160000	261070000	2364	2780	2231	14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217;14218;14219;14220	19361;19362;19363;19364;19365;19366;19367;19368;19369;19370;19371;19372;19373;19374;19375;19376;19377;19378	19375			18	
AHQNTLEVYPPFLFFLAVGGVYHPR	0	Unmodified	2871.4861	0.48605506	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	97.689	88.415	4	1.8103E-22	50615	160513_QHF_FH_JSI9Kac_6	127.05	117.96			1.3596	1.2894	7.0864	2	0	Median	1.4589	1.2264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2671	1.3557	NaN	1	0	Median	295980000	126130000	169850000	210050000	88351000	121700000	0	0	0	0	0	0	85931000	37775000	48156000	2365	214	2232	14221;14222	19379	19379			1	
AHQTGIHATEELK	1	Acetyl (Protein N-term)	1475.7369	0.73685603	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	24.179	23.447	2;3	1.3509E-17	20252	160511_QHF_FH_JSI10i_2	140.39	118.93			1.003	1.0024	14.852	4	0	Median	0.94135	0.79486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.003	1.0024	1.9099	2	0	Median	1.0713	1.133	NaN	1	0	Median	233180000	109920000	123260000	23255000	11652000	11603000	0	0	0	186410000	89787000	96622000	23519000	8480600	15038000	2366	3053	2233	14223;14224;14225;14226;14227	19380;19381;19382;19383;19384;19385;19386;19387	19387			8	
AHQVVEDGYEFFAK	1	Unmodified	1638.7678	0.7678218	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.7		12	4						10	6	7	6	7	62.575	58.433	2;3	5.1414E-30	31534	160513_QHF_FH_JSI11Kac_6	161.94	150.73			0.97505	0.99477	22.836	25	8	Median	1.0802	0.92223	11.967	6	1	Median	0.85549	1.0629	31.648	7	4	Median	0.93621	0.92615	22.934	6	2	Median	1.0074	1.1321	22.174	6	1	Median	4247900000	1983400000	2264600000	719740000	312390000	407350000	1136300000	627890000	508460000	1349500000	621050000	728410000	1042400000	422060000	620350000	2367	1981;1461;1980	2234	14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253	19388;19389;19390;19391;19392;19393;19394;19395;19396;19397;19398;19399;19400;19401;19402;19403;19404;19405;19406;19407;19408;19409;19410;19411;19412;19413;19414;19415;19416;19417;19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428;19429;19430;19431;19432;19433;19434;19435;19436;19437;19438;19439	19399			51	
AHQVVEDGYEFFAKR	1	Acetyl (K)	1836.8795	0.87949752	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	1	0	0	1			By MS/MS		16	0									2			2		72.165	62.745	2;3	7.1935E-17	34031	160513_QHF_FH_JSI11Kac_6	191.05	167.2			0.43196	0.40793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43196	0.40793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33276000	26104000	7172600	0	0	0	0	0	0	33276000	26104000	7172600	0	0	0	2368	1981;1461;1980	2235	14254;14255	19440;19441	19441	1448		2	
AHSFLMDFIHQVGLFGR	0	Oxidation (M)	1989.9883	0.98833646	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	16	0									6	2	2		2	91.889	83.909	3;4	7.3563E-17	48487	160513_QHF_FH_JSI10Kac_6	135.72	129.3			0.8337	0.72368	31.698	5	1	Median	1.0944	0.93102	36.984	2	0	Median	0.59284	0.69611	5.4923	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1982	1.2895	NaN	1	0	Median	527310000	309710000	217600000	99064000	53489000	45575000	278090000	185610000	92481000	0	0	0	150150000	70607000	79543000	2369	3765	2236	14256;14257;14258;14259;14260;14261	19442;19443;19444;19445	19444		2293	3	
AHSFLMDFIHQVGLFGR	0	Unmodified	1973.9934	0.99342184	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									8	2	2	2	2	95.631	87.237	3;4	3.46E-17	51208	160513_QHF_FH_JSI10Kac_6	141.06	131.65			1.0921	1.0484	27.23	8	0	Median	1.0208	0.8879	11.752	2	0	Median	0.64412	0.76668	3.7183	2	0	Median	1.535	1.4424	4.9508	2	0	Median	1.132	1.2078	8.2769	2	0	Median	3058300000	1575200000	1483100000	348650000	184900000	163740000	1728700000	985860000	742810000	505150000	187720000	317430000	475800000	216670000	259130000	2370	3765	2236	14262;14263;14264;14265;14266;14267;14268;14269	19446;19447;19448;19449;19450;19451;19452	19452			7	
AHSGAQGLLAAQK	1	Unmodified	1250.6731	0.67313356	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.91	3.85		3	7						1	5	4	2		18.937	18.003	2;3	5.1304E-07	14900	160511_QHF_FH_JSI11i_3	94.309	83.599			0.80171	0.84354	42.457	8	5	Median	1.0967	0.89199	45.172	3	3	Median	0.66474	0.7875	18.731	4	2	Median	0.42591	0.40583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	335120000	181660000	153460000	123010000	51210000	71803000	147180000	85546000	61631000	64928000	44904000	20024000	0	0	0	2371	5549	2237	14270;14271;14272;14273;14274;14275;14276;14277;14278;14279;14280	19453;19454;19455;19456;19457;19458;19459;19460;19461;19462;19463;19464	19454			12	
AHSILNFLK	1	Unmodified	1041.5971	0.59711507	3370	Q86X53	ERICH1	Glutamate-rich protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			62.236	60.718	3	0.0020322	50783	160511_QHF_FH_JSI10i_3	60.436	48.843			1.8927	2.1359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8927	2.1359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23109000	7302500	15807000	0	0	0	23109000	7302500	15807000	0	0	0	0	0	0	2372	3370	2238	14281	19465	19465			1	
AHSIQIMK	1	Oxidation (M)	942.49569	0.49568646	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.66		4	17					1	6	9	6	6	7	15.997	13.471	2;3	0.0014693	8531	160511_QHF_FH_JSI10i_3	66.073	37.899			0.97835	0.97003	60.634	25	1	Median	1.1233	0.97845	84.051	8	0	Median	1.0465	1.2088	40.391	6	0	Median	1.0005	0.95332	66.393	6	1	Median	0.82177	0.86511	3.4573	5	0	Median	7990500000	4292000000	3698600000	559800000	222130000	337680000	1498000000	802750000	695250000	2118000000	1302700000	815300000	3814700000	1964400000	1850300000	2373	2190	2239	14282;14283;14284;14285;14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297;14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309	19466;19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481;19482;19483;19484;19485;19486;19487;19488;19489;19490;19491;19492;19493;19494;19495;19496	19471		1829	29	
AHSIQIMK	1	Unmodified	926.50077	0.50077184	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	4.6		7	18						4	7	8	6	8	19.604	17.796	2;3	0.0003612	14692	160511_QHF_FH_JSI11i_3	110.81	67.684			0.97788	0.91957	116.1	26	6	Median	1.2348	1.0155	95.613	6	2	Median	0.71572	0.84249	114.68	8	2	Median	0.98277	0.94545	98.289	6	1	Median	0.34832	0.36916	152.32	6	1	Median	19886000000	9060800000	10825000000	2544500000	868890000	1675600000	3742400000	2049200000	1693200000	4413200000	2687000000	1726200000	9185500000	3455700000	5729800000	2374	2190	2239	14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338	19497;19498;19499;19500;19501;19502;19503;19504;19505;19506;19507;19508;19509;19510;19511;19512;19513;19514;19515;19516;19517;19518;19519;19520;19521;19522;19523;19524;19525;19526;19527	19501			31	
AHSLMELSPSAPPGGSPHLDSSR	0	Unmodified	2329.1121	0.112093	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		52.268	52.268	4	0.0011191	46294	160511_QHF_FH_JSI11i_3	43.768	35.378			0.77165	0.7392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77165	0.7392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30237000	13953000	16284000	0	0	0	0	0	0	30237000	13953000	16284000	0	0	0	2375	2446	2240	14339	19528	19528			1	
AHSPMIAVGSDDSSPNAMAK	1	Unmodified	1984.8983	0.89826041	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	40.997	40.341	2;3	1.096E-25	34367	160511_QHF_FH_JSI12i_3	179.09	179.09			1.0355	1.0718	11.43	8	3	Median	1.0833	0.94459	NaN	1	0	Median	0.90242	1.0829	11.278	2	2	Median	1.1527	1.1217	7.3867	2	1	Median	1.1707	1.2058	16.137	3	0	Plateau	1457100000	690800000	766260000	104960000	44478000	60483000	305240000	165530000	139710000	466890000	202630000	264260000	579980000	278170000	301810000	2376	4042	2241	14340;14341;14342;14343;14344;14345;14346;14347;14348	19529;19530;19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541	19538			13	
AHSPMIAVGSDDSSPNAMAK	1	Oxidation (M)	2000.8932	0.89317503	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		33.638	33.638	3	3.872E-06	29306	160511_QHF_FH_JSI11i_3	79.489	65.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2377	4042	2241	14349	19542	19542		2380	1	
AHSPVAVQVPGMQNNIADPEELFTK	1	Acetyl (Protein N-term)	2733.3432	0.34321515	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	1	0	0		By matching	By MS/MS	By MS/MS	1	0	4										1	1	2	100.82	100.72	2;3	1.0215E-107	91436	160511_QHF_FH_JSI11i_1	108.18	75.661			1.2615	1.4929	26.905	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2615	1.4929	NaN	1	0	Median	1.3757	1.3455	NaN	1	0	Median	0.83647	0.89717	NaN	1	0	Median	309000000	98093000	210900000	0	0	0	95819000	44584000	51235000	56955000	26502000	30453000	156220000	27007000	129220000	2378	5206	2242	14350;14351;14352;14353	19543;19544	19543			2	
AHSSMVGVNLPQK	1	Oxidation (M)	1382.6976	0.69763375	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.05		12	29					6	13	15	14	16	15	29.254	25.628	2;3	2.7714E-66	19838	160511_QHF_FH_JSI12i_3	229.73	170.74			0.95838	1.0133	46.729	51	13	Median	1.3229	1.1062	52.809	14	5	Median	0.89579	1.054	51.534	14	4	Median	0.99612	0.96784	43.99	12	3	Median	0.87481	0.89818	34.907	11	1	Median	11070000000	5437900000	5631700000	1116600000	475550000	641040000	1776900000	965200000	811690000	4129300000	1868500000	2260800000	4046800000	2128700000	1918100000	2379	775	2243	14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392;14393;14394;14395;14396;14397;14398;14399;14400;14401;14402;14403;14404;14405;14406;14407;14408;14409;14410;14411;14412;14413	19545;19546;19547;19548;19549;19550;19551;19552;19553;19554;19555;19556;19557;19558;19559;19560;19561;19562;19563;19564;19565;19566;19567;19568;19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623	19610		283	75	
AHSSMVGVNLPQK	1	Unmodified	1366.7027	0.70271913	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.72	6.18	2	12	15					6	8	9	10	9	15	37.313	34.014	2;3	3.3848E-155	28276	160511_QHF_FH_JSI10i_3	303.26	283.5			0.94277	0.97265	58.109	41	11	Median	1.1752	0.9973	31.244	8	1	Median	0.84404	1	13.988	9	3	Median	0.99045	0.97709	25.666	9	2	Median	0.57052	0.64065	85.806	15	5	Median	70536000000	37454000000	33082000000	6905100000	3148300000	3756800000	14113000000	6986900000	7125900000	20623000000	10134000000	10489000000	28895000000	17185000000	11710000000	2380	775	2243	14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456	19624;19625;19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643;19644;19645;19646;19647;19648;19649;19650;19651;19652;19653;19654;19655;19656;19657;19658;19659;19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682;19683;19684;19685;19686;19687;19688;19689;19690;19691;19692;19693;19694;19695;19696;19697;19698;19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713	19640			89	
AHSSMVGVNLPQKAGGFLMK	2	Acetyl (K)	2113.0813	0.081250569	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.607	72.293	3	0.00077581	39803	160513_QHF_FH_JSI11Kac_6	94.325	76.748			1.112	1.0596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.112	1.0596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50408000	36977000	13431000	0	0	0	0	0	0	50408000	36977000	13431000	0	0	0	2381	775	2244	14457	19714	19714	387;388		1	
AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR	0	Unmodified	3533.859	0.85904343	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.454	75.454	4	4.363E-13	67313	160511_QHF_FH_JSI11i_3	68.046	58.076			0.6327	0.5938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6327	0.5938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29071000	23045000	6026100	0	0	0	0	0	0	29071000	23045000	6026100	0	0	0	2382	1598	2245	14458	19715	19715			1	
AHSVYNFEK	1	Unmodified	1093.5193	0.51925868	394	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	0				By MS/MS	3	0			1										1	19.837	19.85	2	0.0088252	16143	160511_QHF_FH_JSI12i_3	60.828	49.06			0.83984	0.85077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83984	0.85077	NaN	1	1	Median	26161000	14759000	11402000	0	0	0	0	0	0	0	0	0	26161000	14759000	11402000	2383	394	2246	14459	19716	19716			1	
AHTDFFEAFK	1	Unmodified	1211.5611	0.56112349	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	59.495	58.573	2;3	2.0475E-06	50690	160511_QHF_FH_JSI11i_2	90.15	79.393			1.0728	1.0296	39.034	8	2	Median	1.1225	0.95622	8.827	2	1	Median	1.4658	1.7837	76.075	2	1	Median	1.0567	1.0827	11.697	2	0	Median	1.0007	1.1112	12.675	2	0	Median	863820000	399330000	464480000	136130000	56798000	79334000	251530000	111830000	139700000	278900000	139400000	139500000	197260000	91304000	105950000	2384	1943	2247	14460;14461;14462;14463;14464;14465;14466;14467	19717;19718;19719;19720;19721;19722;19723;19724;19725;19726;19727;19728;19729;19730	19725			14	
AHTDSLNTLVALHQLYQYTQK	1	Unmodified	2443.2496	0.24957276	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			12.8	5.63			1						3	1	3			83.231	78	3;4	9.1094E-17	41731	160513_QHF_FH_JSI10Kac_6	126.9	119.28			1.0414	1.1812	33.432	4	2	Median	0.96238	0.82629	NaN	1	1	Median	1.1268	1.3525	27.497	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218730000	119150000	99587000	51666000	33852000	17813000	167070000	85294000	81774000	0	0	0	0	0	0	2385	236	2248	14468;14469;14470;14471	19731;19732;19733;19734	19734			4	
AHTFSHPPSSTK	1	Unmodified	1295.6258	0.62584901	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				8.1055	7.5137	3	0.026261	5286	160511_QHF_FH_JSI9i_3	34.179	22.966			1.1082	0.91434	NaN	1	1	Median	1.1082	0.91434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28600000	15000000	13600000	28600000	15000000	13600000	0	0	0	0	0	0	0	0	0	2386	413	2249	14472	19735	19735			1	
AHTLILQPPSEK	1	Unmodified	1332.7402	0.74015049	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	38.234	38.119	3	0.013504	32589	160511_QHF_FH_JSI12i_3	37.236	28.931			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2387	4868	2250	14473;14474;14475	19736;19737;19738	19738			3	
AHTLLSPPSANNATFAR	0	Unmodified	1766.9064	0.90638097	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				49.684	48.079	3	6.338E-06	39537	160511_QHF_FH_JSI9i_3	91.657	80.217			1.2632	1.0378	NaN	1	0	Median	1.2632	1.0378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67144000	30047000	37097000	67144000	30047000	37097000	0	0	0	0	0	0	0	0	0	2388	1638	2251	14476	19739;19740	19739			2	
AHTMTDDVTFWK	1	Unmodified	1450.6551	0.65510023	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.62		8	5						8	7	6	4	4	60.195	55.782	2;3	2.3429E-06	48017	160511_QHF_FH_JSI12i_2	100.09	96.764			1.1477	1.0751	21.654	18	5	Median	1.2857	1.0771	17.924	6	4	Median	0.81036	0.99679	19.653	4	0	Linear	1.0933	1.0751	7.4283	4	1	Median	0.79716	0.87245	36.559	4	0	Linear	2485500000	1210600000	1274900000	374710000	161430000	213280000	602060000	311640000	290420000	895180000	413830000	481350000	613530000	323730000	289800000	2389	2155	2252	14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497	19741;19742;19743;19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754;19755;19756;19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786	19745			46	
AHTPQVHK	1	Unmodified	916.4879	0.48789897	3701	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			4.973	4.496	2	0.026824	2561	160511_QHF_FH_JSI10i_3	51.787	33.056			1.0376	1.1773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0376	1.1773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31738000	13207000	18531000	0	0	0	31738000	13207000	18531000	0	0	0	0	0	0	2390	3701	2253	14498	19787	19787			1	
AHTSSTQLQEELEK	1	Unmodified	1599.774	0.77402939	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		3	2					1		2	1	1	2	30.778	28.583	2;3	9.0987E-05	24936	160511_QHF_FH_JSI10i_2	97.69	84.571			0.81765	0.78163	80.887	6	6	Median	1.6286	1.3766	99.186	2	2	Median	0.27991	0.33902	NaN	1	1	Median	0.33815	0.31274	NaN	1	1	Median	0.89374	0.97709	12.421	2	2	Median	562800000	408510000	154290000	80308000	49263000	31045000	241370000	203200000	38168000	114080000	86399000	27679000	127050000	69648000	57397000	2391	5755	2254	14499;14500;14501;14502;14503;14504	19788;19789;19790;19791;19792;19793	19792			6	
AHVAELERR	0	Unmodified	1079.5836	0.58359027	3475	Q8IZ52	CHPF	Chondroitin sulfate synthase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			11.604	10.86	2	0.00090798	8425	160511_QHF_FH_JSI9i_3	72.138	50.052			0.83611	0.81609	1.6221	2	0	Median	0.98025	0.80678	NaN	1	0	Median	0.71318	0.8255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	209350000	101130000	108210000	139170000	63438000	75734000	70175000	37696000	32479000	0	0	0	0	0	0	2392	3475	2255	14505;14506	19794;19795;19796	19796			3	
AHVDEFK	1	Unmodified	844.40792	0.40791731	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	10.731	10.318	2;3	0.0082581	7720	160511_QHF_FH_JSI11i_2	84.244	63.689			0.74941	0.7259	34.492	4	1	Linear	1.3056	1.1196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84285	0.85502	6.6358	2	0	Median	1.5948	1.7682	NaN	1	1	Median	725020000	317030000	407980000	108610000	47089000	61525000	0	0	0	411370000	200910000	210470000	205030000	69036000	135990000	2393	2772	2256	14507;14508;14509;14510;14511;14512;14513;14514	19797;19798;19799;19800;19801;19802;19803;19804	19802			8	
AHVDEFKSVSK	2	Acetyl (K)	1287.6459	0.64591575	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								3			1	2		37.744	27.902	2;3	0.0028781	16219	160513_QHF_FH_JSI11Kac_5	52.693	32.931			0.56717	0.60928	72.642	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86586	1.0183	NaN	1	0	Median	0.37151	0.36453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18792000	13061000	5730700	0	0	0	4141800	2062300	2079500	14650000	10999000	3651200	0	0	0	2394	2772	2257	14515;14516;14517	19805;19806;19807	19805	2677		2	
AHVEAPIAGSMVLAAVLLK	1	Unmodified	1889.0808	0.080839863	797	P03905	MT-ND4	NADH-ubiquinone oxidoreductase chain 4	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			101.73	101.58	3	9.4331E-05	84230	160511_QHF_FH_JSI10i_3	64.89	55.102			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2395	797	2258	14518	19808	19808			1	
AHVEGDGVVEGIIR	0	Unmodified	1449.7576	0.75759147	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	49.165	48.567	2;3	0.00042781	41925	160511_QHF_FH_JSI11i_2	70.17	54.279			0.84084	0.8507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84084	0.8507	NaN	1	0	Median	48196000	27215000	20982000	0	0	0	6408800	6408800	0	0	0	0	41788000	20806000	20982000	2396	28	2259	14519;14520;14521	19809;19810;19811	19809			3	
AHVETLR	0	Unmodified	824.45045	0.45045083	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	8.0255	7.763	2	0.019031	5102	160511_QHF_FH_JSI12i_3	58.981	25.243		+	0.97068	0.90488	34.606	4	0	Median	0.88182	0.74394	NaN	1	0	Median	0.43658	0.54225	NaN	1	0	Median	1.1018	1.1145	NaN	1	0	Median	1.0685	1.1006	NaN	1	0	Median	560370000	300060000	260310000	53480000	36252000	17228000	98856000	67073000	31783000	89214000	42752000	46462000	318820000	153980000	164840000	2397	58	2260	14522;14523;14524;14525	19812;19813	19813			2	
AHVIVMAATNRPNSIDPALR	0	Unmodified	2145.1477	0.14769065	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		60.073	50.995	3	4.7463E-06	27014	160513_QHF_FH_JSI9Kac_6	78.234	73.581			0.83328	0.99328	9.1198	3	0	Plateau	1.1017	0.95024	NaN	1	0	Median	0.83318	0.99328	NaN	1	0	Median	1.153	1.1324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131990000	69111000	62877000	30283000	15730000	14554000	75750000	41188000	34562000	25955000	12194000	13761000	0	0	0	2398	1846	2261	14526;14527;14528	19814;19815;19816;19817;19818;19819;19820;19821	19818			8	
AHVIVMAATNRPNSIDPALR	0	Oxidation (M)	2161.1426	0.14260527	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			51.844	42.924	3	0.00025219	23635	160513_QHF_FH_JSI10Kac_6	63.337	48.567			1.019	1.0255	5.7124	2	0	Median	1.1583	0.98491	NaN	1	0	Median	0.89637	1.0678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35924000	19025000	16899000	18559000	9526200	9032500	17365000	9499000	7866000	0	0	0	0	0	0	2399	1846	2261	14529;14530	19822;19823;19824;19825;19826	19826		1520	5	
AHVIVMAATNRPNSIDPALRR	0	Unmodified	2301.2488	0.24880168	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									4	2	2			53.59	44.692	4;5	0.0023717	24442	160513_QHF_FH_JSI10Kac_6	45.608	41.256			1.0406	1.0567	41.459	4	0	Median	0.86632	0.74044	7.1365	2	0	Median	1.2795	1.5076	7.084	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65225000	33428000	31798000	28587000	13636000	14951000	36639000	19791000	16847000	0	0	0	0	0	0	2400	1846	2262	14531;14532;14533;14534	19827;19828;19829	19829			1	
AHVLAASVEQATENFLEK	1	Unmodified	1955.9953	0.99525556	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	3.66		2	9						1	3	4	4	1	83.523	82.14	2;3	6.1411E-29	74132	160511_QHF_FH_JSI11i_3	221.14	188.19			0.57529	0.62328	51.828	9	5	Median	0.32191	0.29089	98.416	3	2	Plateau	0.58881	0.69225	9.7786	2	1	Median	0.68765	0.62328	19.012	3	2	Median	0.48851	0.49316	NaN	1	0	Median	1047100000	647110000	400010000	274680000	173370000	101310000	217130000	145460000	71672000	434950000	242730000	192230000	120360000	85554000	34804000	2401	1421	2263	14535;14536;14537;14538;14539;14540;14541;14542;14543;14544;14545;14546	19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843	19833			14	
AHVLGFLAR	0	Unmodified	982.57123	0.57123467	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		57.322	47.597	3	0.0012847	25776	160513_QHF_FH_JSI11Kac_6	61.962	26.667			1.2831	1.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2831	1.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5338600	2191800	3146800	0	0	0	0	0	0	5338600	2191800	3146800	0	0	0	2402	4876	2264	14547	19844	19844			1	
AHVLHFGK	1	Unmodified	907.50282	0.50282075	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			18.874	17.729	3	0.0037527	14195	160511_QHF_FH_JSI9i_3	42.869	26.093			0.86472	0.83693	15.536	2	0	Median	1.1686	0.93411	NaN	1	0	Median	0.63986	0.74985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86601000	46160000	40441000	58618000	29403000	29214000	27983000	16756000	11226000	0	0	0	0	0	0	2403	4416	2265	14548;14549	19845;19846	19846			2	
AHVQEVAQHNLK	1	Unmodified	1372.7211	0.72114638	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7								2	3	4	12.483	12.349	2;3;4	5.9381E-08	9656	160511_QHF_FH_JSI11i_3	130.56	108.33			0.79047	0.78111	28.642	9	3	Median	NaN	NaN	NaN	0	0	Median	0.66271	0.7818	32.159	2	1	Median	0.82643	0.78111	14.521	3	0	Plateau	0.67793	0.69579	39.787	4	2	Median	1271500000	649050000	622430000	0	0	0	83402000	52153000	31249000	339890000	136440000	203440000	848190000	460450000	387740000	2404	3328	2266	14550;14551;14552;14553;14554;14555;14556;14557;14558	19847;19848;19849;19850;19851;19852;19853;19854;19855;19856;19857;19858	19850			12	
AHVTHPELK	1	Unmodified	1030.556	0.55597854	699	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.0945	9.192	3	0.010799	6623	160511_QHF_FH_JSI12i_3	44.425	24.648			0.74344	0.75399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74344	0.75399	NaN	1	1	Median	167510000	107220000	60291000	0	0	0	0	0	0	0	0	0	167510000	107220000	60291000	2405	699	2267	14559	19859	19859			1	
AHVVPCFDASK	1	Unmodified	1229.5863	0.58629239	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.48		8	4						3	2	2	6	5	32.626	30.742	2;3	2.3449E-05	26290	160511_QHF_FH_JSI11i_3	73.781	68.468			1.0189	1.0447	18.211	14	2	Median	1.2893	1.107	15.104	2	0	Median	0.79891	0.98885	1.9827	2	0	Median	0.87642	0.88849	15.057	5	1	Median	1.1624	1.2674	7.4001	5	1	Median	1725900000	801060000	924840000	130640000	61340000	69298000	247960000	127320000	120640000	704050000	369750000	334300000	643250000	242650000	400610000	2406	1192	2268	14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574	19860;19861;19862;19863;19864;19865;19866;19867;19868;19869;19870;19871;19872;19873;19874;19875;19876;19877;19878;19879;19880;19881;19882;19883;19884	19861			24	
AHWKFLK	2	Acetyl (K)	970.53887	0.53887191	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	57.181	47.385	3	0.0012082	25694	160513_QHF_FH_JSI11Kac_6	97.068	70.106			0.47542	0.47506	42.096	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38323	0.35276	NaN	1	0	Median	0.58978	0.63977	NaN	1	0	Median	77540000	56534000	21006000	0	0	0	0	0	0	60343000	45706000	14637000	17196000	10827000	6368700	2407	231	2269	14575;14576	19885;19886	19885	124;125		2	
AHWTPFEGQK	1	Unmodified	1199.5724	0.57235688	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	31.59	31.279	2;3	5.5465E-11	26287	160511_QHF_FH_JSI12i_3	146.81	124.72			1.0008	1.0368	13.966	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0008	1.1619	NaN	1	1	Median	0.93524	0.88121	1.9439	2	1	Median	1.0878	1.099	8.2347	2	0	Median	783050000	409980000	373070000	0	0	0	58077000	26302000	31775000	197930000	107090000	90831000	527050000	276590000	250460000	2408	1296	2270	14577;14578;14579;14580;14581	19887;19888;19889;19890;19891	19890			5	
AHYNFKK	2	Acetyl (K);Acetyl (Protein N-term)	990.49232	0.49231565	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	1	2	2	38.273	28.55	2	5.0427E-06	16448	160513_QHF_FH_JSI11Kac_5	75.311	59.157			1.34	1.3201	10.618	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.34	1.3201	10.618	2	0	Median	NaN	NaN	NaN	0	0	Median	31442000	18168000	13273000	0	0	0	0	0	0	31442000	18168000	13273000	0	0	0	2409	4559	2271	14582;14583;14584;14585;14586;14587	19892;19893;19894;19895;19896;19897	19895	3184		6	
AHYNFKK	2	Acetyl (Protein N-term)	948.48175	0.48175096	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	1	0	1				By MS/MS	3	0			2										2	14.161	14.235	2;3	0.0089076	11028	160511_QHF_FH_JSI12i_3	32.47	13.688			0.86242	0.85578	14.062	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86242	0.85578	14.062	2	0	Median	84781000	46466000	38315000	0	0	0	0	0	0	0	0	0	84781000	46466000	38315000	2410	4559	2271	14588;14589	19898;19899	19899			2	
AIAAAHTFLLK	1	Unmodified	1154.6812	0.68117905	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.35		1	9						6	5	4	4	3	54.642	50.204	2;3	1.5413E-38	41488	160511_QHF_FH_JSI9i_3	192.1	148.81			0.94778	0.97841	11.583	14	1	Median	1.1187	0.8876	15.245	3	0	Median	0.84263	0.99121	6.4857	4	1	Median	1.0849	1.0369	9.4622	4	0	Median	1.041	1.0456	12.42	3	0	Plateau	4362400000	2169700000	2192600000	814080000	414090000	399990000	931260000	507330000	423940000	1125500000	516250000	609210000	1491500000	732040000	759500000	2411	561	2272	14590;14591;14592;14593;14594;14595;14596;14597;14598;14599;14600;14601;14602;14603;14604;14605	19900;19901;19902;19903;19904;19905;19906;19907;19908;19909;19910;19911;19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928	19914			29	
AIAAKHNK	2	Acetyl (K)	893.5083	0.50830006	1067	P15121	AKR1B1	Aldose reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	3	1	7.1402	-1.2341	2;3	0.0040599	2307	160513_QHF_FH_JSI11Kac_6	60.508	46.929			0.37694	0.39738	60.797	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0419	1.2232	NaN	1	0	Median	0.28737	0.28029	23.585	3	0	Plateau	0.37694	0.39738	NaN	1	0	Median	70790000	49349000	21441000	0	0	0	16571000	8467300	8103800	46922000	36114000	10808000	7296200	4767100	2529100	2412	1067	2273	14606;14607;14608;14609;14610	19929;19930;19931;19932	19930	900		4	
AIAALISEK	1	Unmodified	914.54368	0.54368251	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	46.125	45.36	2	5.0724E-06	39833	160511_QHF_FH_JSI11i_3	117.04	71.318			1.081	1.0152	46.913	5	2	Median	0.99287	0.83716	NaN	1	0	Median	0.91575	1.0988	89.198	2	2	Median	1.081	1.0152	NaN	1	0	Median	1.2302	1.2416	NaN	1	0	Median	372350000	173170000	199170000	39991000	20491000	19500000	55100000	30252000	24848000	105400000	48713000	56685000	171860000	73715000	98142000	2413	3439	2274	14611;14612;14613;14614;14615	19933;19934;19935;19936;19937;19938;19939	19934			7	
AIAALSFWQK	1	Unmodified	1133.6233	0.62332982	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			2						2	2		1	1	80.646	75.753	2	0.00036493	65193	160511_QHF_FH_JSI9i_3	76.827	71.92			0.8558	0.78595	10.967	4	0	Median	1.0212	0.85556	11.564	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79883	0.78352	NaN	1	0	Median	0.7539	0.71297	NaN	1	0	Median	108120000	55575000	52545000	50542000	25545000	24997000	0	0	0	26237000	12504000	13733000	31341000	17526000	13815000	2414	4721	2275	14616;14617;14618;14619	19940;19941;19942	19941			2	
AIADHLFWSEETK	1	Unmodified	1545.7464	0.74635808	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	60.999	60.816	2;3	2.3951E-05	52377	160511_QHF_FH_JSI12i_3	77.527	64.9			1.2156	1.2288	10.531	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1134	1.0472	NaN	1	0	Median	1.2398	1.2529	2.7362	2	0	Median	355660000	157000000	198660000	0	0	0	0	0	0	121770000	57855000	63914000	233890000	99141000	134750000	2415	4085	2276	14620;14621;14622	19943;19944;19945;19946;19947;19948;19949	19948			7	
AIADMLR	0	Unmodified	788.42146	0.42145889	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.703	42.02	2	0.0047315	36916	160511_QHF_FH_JSI11i_3	97.473	34.494			1.1585	1.1342	10.581	6	0	Median	1.1255	0.94917	NaN	1	0	Median	0.87448	1.0676	NaN	1	0	Median	1.2438	1.2088	0.45322	2	0	Median	1.0731	1.1384	11.933	2	0	Median	655240000	344470000	310770000	93720000	44080000	49640000	85839000	50504000	35335000	231820000	121900000	109920000	243850000	127980000	115870000	2416	5616	2277	14623;14624;14625;14626;14627;14628	19950;19951;19952;19953;19954;19955;19956	19950			7	
AIADTGANVVVTGGK	1	Unmodified	1371.7358	0.73579339	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.02	8	4	4		3	6	2	2	2	6	10	8	7	45.11	40.104	2;3	4.5025E-137	36690	160511_QHF_FH_JSI12i_1	283.43	231.15			0.91112	0.9737	21.604	31	2	Median	1.1521	0.94635	18.661	6	0	Median	0.79647	0.94987	29.103	10	1	Median	1.0905	1.0633	20.493	8	1	Median	0.90613	0.94909	12.86	7	0	Median	9461900000	4464200000	4997800000	1758300000	772200000	986090000	2757100000	1303300000	1453800000	2496300000	1150800000	1345500000	2450300000	1237900000	1212400000	2417	1721	2278	14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654;14655;14656;14657;14658;14659	19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985;19986;19987;19988;19989;19990;19991;19992;19993;19994;19995;19996;19997;19998;19999;20000;20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011;20012;20013	19969			56	
AIADWYNEK	1	Unmodified	1108.5189	0.51892433	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	45.749	45.037	2	5.6693E-06	38494	160511_QHF_FH_JSI12i_2	114.89	97.655			1.1069	1.2784	9.5943	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1788	1.1795	NaN	1	0	Median	1.24	1.3511	7.8228	2	0	Median	305410000	127060000	178340000	0	0	0	0	0	0	106240000	55274000	50963000	199170000	71791000	127380000	2418	962	2279	14660;14661;14662	20014;20015;20016;20017;20018	20014			5	
AIAELGIYPAVDPLDSTSR	0	Unmodified	1987.0262	0.026221336	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.789	8	9	7							6	8	6	4	93.633	93.206	2;3	9.4083E-54	82842	160511_QHF_FH_JSI9i_1	269.7	247.47			1.0972	1.1705	22.701	20	6	Median	1.3409	1.1425	7.3438	4	1	Median	0.99669	1.1819	27.81	7	3	Median	1.103	1.0753	27.406	5	1	Median	1.169	1.2258	10.409	4	1	Median	5241600000	2508600000	2733000000	669660000	291250000	378410000	1870900000	960620000	910240000	1338400000	632270000	706090000	1362700000	624440000	738230000	2419	851	2280	14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684;14685;14686	20019;20020;20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036;20037;20038;20039;20040;20041;20042;20043;20044;20045;20046;20047;20048;20049;20050;20051;20052;20053;20054;20055;20056;20057;20058;20059;20060	20046			42	
AIAFLQQPR	0	Unmodified	1042.5924	0.59236404	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.42		3	4				1	3	4	3	4	4	4	58.42	52.661	2	5.7177E-06	43081	160511_QHF_FH_JSI9i_3	114.72	87.6			0.9728	0.82067	18.917	15	3	Plateau	1.124	0.90755	16.482	3	1	Median	0.8827	1.0375	28.917	4	2	Median	1.0048	0.95298	21.74	4	0	Median	0.84647	0.88025	9.7082	4	0	Median	4591500000	2551300000	2040200000	1201300000	553980000	647270000	1005600000	710570000	295050000	1244000000	697330000	546700000	1140600000	589430000	551190000	2420	1205	2281	14687;14688;14689;14690;14691;14692;14693;14694;14695;14696;14697;14698;14699;14700;14701	20061;20062;20063;20064;20065;20066;20067;20068;20069;20070	20065			10	
AIAGDEHK	1	Unmodified	839.41373	0.41373097	1793	P53041;E7EU14	PPP5C;PPP5D1	Serine/threonine-protein phosphatase 5;Protein PPP5D1	yes	no	0	0	0	0		By matching	By MS/MS	By MS/MS	4.4	4.8		4					1				1	3	1	4.8974	3.1041	2;3	0.00056048	2339	160511_QHF_FH_JSI11i_2	104.21	18.944			0.90658	0.98197	4.0788	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78325	0.96437	NaN	1	0	Median	0.95969	0.96367	5.2171	2	0	Median	0.90518	1.0184	NaN	1	0	Median	780350000	324880000	455470000	0	0	0	133980000	84802000	49174000	488620000	149610000	339000000	157750000	90459000	67296000	2421	1793	2282	14702;14703;14704;14705;14706	20071;20072;20073;20074;20075	20073			5	
AIAGDEHKR	1	Unmodified	995.51484	0.514842	1793	P53041;E7EU14	PPP5C;PPP5D1	Serine/threonine-protein phosphatase 5;Protein PPP5D1	yes	no	0	0	0	1		By MS/MS			3	0			1								1			4.5267	4.0496	3	0.044169	2068	160511_QHF_FH_JSI10i_3	26.957	11.806			9.2994	10.617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9.2994	10.617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	848850000	19671000	829180000	0	0	0	848850000	19671000	829180000	0	0	0	0	0	0	2422	1793	2283	14707	20076	20076			1	
AIAGDEHKR	1	Acetyl (K)	1037.5254	0.52540669	1793	P53041;E7EU14	PPP5C;PPP5D1	Serine/threonine-protein phosphatase 5;Protein PPP5D1	yes	no	1	0	0	1			By MS/MS		15	0								1				1		9.276	-0.2063	2	0.038634	3576	160513_QHF_FH_JSI11Kac_5	59.35	30.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2142000	2142000	0	0	0	0	0	0	0	2142000	2142000	0	0	0	0	2423	1793	2283	14708	20077	20077			1	
AIAGMYK	1	Unmodified	752.3891	0.38909613	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	22.519	21.895	2	0.013952	18849	160511_QHF_FH_JSI10i_2	66.994	22.021			1.5487	1.6804	49.93	6	0	Median	1.3831	1.213	NaN	1	0	Median	1.734	2.1258	NaN	1	0	Median	1.6672	1.6654	95.732	2	0	Median	1.6793	1.7676	40.407	2	0	Median	567110000	215460000	351640000	99143000	38394000	60749000	114500000	45683000	68816000	209490000	77874000	131610000	143980000	53513000	90467000	2424	4171	2284	14709;14710;14711;14712;14713;14714	20078;20079;20080;20081;20082	20081			5	
AIAGMYKQR	1	Acetyl (K)	1078.5593	0.55934935	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.603	29.09	2	0.025722	16132	160513_QHF_FH_JSI11Kac_6	60.76	44.557			0.10431	0.10926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10431	0.10926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1938000	1837900	100050	0	0	0	0	0	0	1938000	1837900	100050	0	0	0	2425	4171	2285	14715	20083	20083	3066		1	
AIAGNDDVK	1	Unmodified	901.45051	0.45051041	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.85	10.466	2	0.00027447	8492	160511_QHF_FH_JSI12i_1	96.027	50.145			1.0115	1.0824	28.376	4	3	Median	1.7477	1.4293	NaN	1	1	Median	1.0695	1.2353	NaN	1	1	Median	0.95657	0.94851	NaN	1	0	Median	0.71979	0.75358	NaN	1	1	Median	482100000	233110000	248990000	128720000	46640000	82079000	120810000	58458000	62356000	111620000	59768000	51857000	120940000	68242000	52695000	2426	3079	2286	14716;14717;14718;14719	20084;20085;20086;20087	20085			4	
AIAGVINQPYYNYEAGPDAVLGR	0	Unmodified	2450.223	0.22302366	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.606	5	7	1							3	3	4	3	86.331	85.81	2;3	1.1341E-48	77852	160511_QHF_FH_JSI10i_1	211.13	197.99			1.0878	1.1978	13.12	11	3	Median	1.3014	1.1419	16.359	2	1	Median	0.94821	1.219	14.798	3	1	Median	1.6276	1.5389	18.224	4	1	Linear	1.0912	1.1786	2.2864	2	0	Median	318700000	147120000	171580000	50044000	17192000	32852000	83334000	43843000	39491000	148270000	68662000	79609000	37051000	17420000	19631000	2427	738	2287	14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732	20088;20089;20090;20091;20092;20093;20094;20095;20096;20097;20098;20099;20100;20101;20102;20103;20104;20105;20106;20107;20108	20097			20	
AIAGVSGFGYDHLILNVEWAK	1	Unmodified	2259.1688	0.16880325	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.137	81.831	3	2.0597E-29	47339	160513_QHF_FH_JSI10Kac_6	159.7	138.03			1.111	1.065	11.402	4	0	Median	1.1564	0.98878	NaN	1	0	Median	0.78699	0.9226	NaN	1	0	Median	1.195	1.1652	NaN	1	0	Median	1.0673	1.1472	NaN	1	0	Median	460800000	229000000	231800000	100150000	41816000	58335000	172880000	92093000	80785000	95171000	42186000	52985000	92606000	52908000	39698000	2428	570	2288	14733;14734;14735;14736	20109;20110;20111;20112;20113;20114;20115	20115			7	
AIAHQLIK	1	Unmodified	892.54944	0.54943659	4362	Q9BQG2	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.98	18.019	3	0.0049107	14566	160511_QHF_FH_JSI12i_3	47.082	28.351			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2429	4362	2289	14737	20116	20116			1	
AIAHYEQSADYYK	1	Unmodified	1557.71	0.70997257	1838;4649	P54920;Q9H115	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.33		8	5						3	4	3	5	4	32.417	29.846	2;3	6.7685E-31	26245	160511_QHF_FH_JSI10i_2	222.74	203.5			0.94416	1.0135	20.672	12	1	Median	1.3575	1.1092	2.8754	3	0	Plateau	0.79988	0.98058	12.342	3	0	Plateau	0.95669	0.96011	7.673	3	0	Plateau	0.9859	1.0942	29.49	3	1	Median	1101700000	493900000	607820000	203380000	90187000	113190000	281450000	120350000	161100000	327910000	130660000	197250000	288970000	152700000	136280000	2430	1838;4649	2290	14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753	20117;20118;20119;20120;20121;20122;20123;20124;20125;20126;20127;20128;20129;20130;20131;20132;20133;20134;20135;20136;20137	20132			19	
AIAIATR	0	Unmodified	714.43882	0.43882351	3068	Q6N069	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	24.057	23.527	2	0.010337	19546	160511_QHF_FH_JSI12i_3	75.269	3.4163			1.0116	0.89639	41.171	5	0	Median	1.0874	0.89639	NaN	1	0	Median	0.73013	0.83819	NaN	1	0	Median	1.0116	0.95472	NaN	1	0	Median	1.2304	1.252	73.109	2	0	Median	637180000	302770000	334410000	41721000	16153000	25568000	72440000	45499000	26941000	84726000	43458000	41268000	438290000	197660000	240630000	2431	3068	2291	14754;14755;14756;14757;14758	20138;20139	20139			2	
AIAIMEVAHGK	1	Unmodified	1138.6169	0.61686423	4955	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			4								1		3	42.635	42.082	2;3	0.00015057	35942	160511_QHF_FH_JSI12i_3	82.445	71.232			1.3898	1.0553	31.512	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.98209	1.1115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3235	1.3323	38.416	3	3	Plateau	382340000	181340000	201010000	0	0	0	31625000	18557000	13068000	0	0	0	350720000	162780000	187940000	2432	4955	2292	14759;14760;14761;14762	20140;20141;20142;20143	20143			4	
AIAINTFLPK	1	Unmodified	1086.6437	0.64373091	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.267	75.267	2	0.0013582	67186	160511_QHF_FH_JSI11i_3	66.351	56.44			1.2616	1.1916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2616	1.1916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60253000	23131000	37122000	0	0	0	0	0	0	60253000	23131000	37122000	0	0	0	2433	3859	2293	14763	20144	20144			1	
AIAIPVDLDSQVNNLFLK	1	Unmodified	1969.0884	0.088427662	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1.67	0.471	1	2								1	1	1		102.03	101.96	3	5.2337E-06	92418	160511_QHF_FH_JSI10i_1	89.506	80.252			0.9494	0.81023	19.384	3	0	Plateau	1.0713	0.92229	NaN	1	0	Median	0.9494	1.1375	NaN	1	0	Median	0.77878	0.77229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	529120000	289940000	239180000	190560000	90536000	100020000	128450000	81901000	46546000	210110000	117500000	92616000	0	0	0	2434	2549	2294	14764;14765;14766	20145	20145			1	
AIALQPENPMAHFLLGR	0	Unmodified	1876.9982	0.99817287	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	95.859	95.583	3	1.0117E-06	85002	160511_QHF_FH_JSI11i_3	110.35	102.94			0.93775	0.89704	14.32	6	2	Median	1.1715	0.96362	13.923	2	1	Median	0.78272	0.94676	23.856	2	1	Median	0.95431	0.92147	NaN	1	0	Median	0.77587	0.7978	NaN	1	0	Median	508660000	258290000	250370000	114670000	45633000	69037000	108420000	56866000	51555000	173000000	91681000	81318000	112570000	64111000	48463000	2435	4262	2295	14767;14768;14769;14770;14771;14772	20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156	20147			10	
AIALQPENPMAHFLLGR	0	Oxidation (M)	1892.9931	0.99308749	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			73.507	72.049	3	0.00049027	60425	160511_QHF_FH_JSI10i_3	55.186	43.666			1.1633	1.1356	6.964	2	0	Median	1.3252	1.081	NaN	1	0	Median	1.0213	1.1929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52264000	28524000	23741000	27174000	11429000	15744000	25091000	17094000	7996300	0	0	0	0	0	0	2436	4262	2295	14773;14774	20157;20158;20159;20160;20161	20158		2420	5	
AIAMSLGQDIPMDQR	0	Unmodified	1644.7964	0.79636152	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	71.609	70.657	2	0.0004256	61855	160511_QHF_FH_JSI11i_2	92.19	81.96			0.2991	0.31073	24.839	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25976	0.26068	NaN	1	1	Median	0.3444	0.37039	NaN	1	1	Median	102420000	78676000	23746000	0	0	0	0	0	0	59802000	47790000	12012000	42620000	30886000	11734000	2437	3290	2296	14775;14776	20162;20163	20163			2	
AIANECQANFISIK	1	Unmodified	1577.7872	0.78717704	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.33	4	4	2				2	1		3	3	4	3	62.395	58.949	2	3.5097E-31	52105	160511_QHF_FH_JSI10i_2	162.31	109.52			0.98656	1.0086	44.169	11	3	Median	1.4056	1.1652	33.834	3	2	Median	0.87259	1.0362	3.8182	2	0	Median	0.89663	0.89867	4.5484	3	0	Median	1.3205	1.3725	86.176	3	1	Median	1307500000	674600000	632910000	184090000	86724000	97369000	219800000	117530000	102270000	481210000	261550000	219660000	422400000	208790000	213610000	2438	1846	2297	14777;14778;14779;14780;14781;14782;14783;14784;14785;14786;14787;14788;14789	20164;20165;20166;20167;20168;20169;20170;20171;20172;20173;20174;20175;20176;20177;20178;20179;20180;20181;20182;20183;20184	20182			21	
AIANLYGPLMALNHMVQQDYFPK	1	Unmodified	2633.3134	0.31343535	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.93	101.93	3	1.7887E-38	91056	160511_QHF_FH_JSI11i_3	191.65	174.93			2.1239	1.9788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1239	1.9788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	392320000	89908000	302410000	0	0	0	0	0	0	392320000	89908000	302410000	0	0	0	2439	1578	2298	14790	20185;20186	20186			2	
AIAQLFEK	1	Unmodified	918.51747	0.51746776	2228	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	54.54	53.419	2	0.0016104	45803	160511_QHF_FH_JSI12i_3	87.181	47.078			0.997	1.4895	29.236	3	0	Plateau	0.997	0.83006	NaN	1	0	Median	0.98051	1.1058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4347	1.4895	NaN	1	0	Median	161040000	78285000	82754000	13280000	7763600	5516000	31397000	15140000	16257000	0	0	0	116360000	55381000	60981000	2440	2228	2299	14791;14792;14793	20187;20188	20188			2	
AIASSLK	1	Unmodified	688.41194	0.41194006	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.58	4	3	4				2	2		3	3	5	4	16.536	13.76	2	0.013211	9341	160513_QHF_FH_JSI11Kac_4	76.847	40.26			1.0327	1.0792	12.506	15	0	Median	1.2663	1.0792	4.7717	3	0	Median	0.93017	1.0836	3.1667	3	0	Median	1.0327	1.0004	16.08	5	0	Median	1.0486	1.101	17.666	4	0	Median	3054800000	1509000000	1545700000	559080000	241760000	317320000	414170000	227670000	186500000	1026000000	519260000	506730000	1055500000	520350000	535150000	2441	589	2300	14794;14795;14796;14797;14798;14799;14800;14801;14802;14803;14804;14805;14806;14807;14808	20189;20190;20191;20192;20193;20194;20195;20196;20197;20198;20199;20200;20201;20202	20196			14	
AIASSLKSWNETLTSR	1	Acetyl (K)	1804.9319	0.93192702	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.574	69.259	2	3.3166E-42	37966	160513_QHF_FH_JSI11Kac_6	224.05	188.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8187800	8187800	0	0	0	0	0	0	0	8187800	8187800	0	0	0	0	2442	589	2301	14809	20203	20203	304		1	
AIATPVQGVWDMR	0	Unmodified	1442.734	0.73401926	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	74.394	73.541	2	4.401E-05	64426	160511_QHF_FH_JSI11i_2	113.93	67.768			0.74676	0.84227	6.0204	4	2	Median	NaN	NaN	NaN	0	0	Median	0.66085	0.82981	6.6585	2	1	Median	0.80143	0.8156	NaN	1	0	Median	0.79553	0.90385	NaN	1	1	Median	149140000	80261000	68877000	0	0	0	52232000	31693000	20539000	61973000	31699000	30274000	34932000	16869000	18063000	2443	5381	2302	14810;14811;14812;14813;14814;14815	20204;20205;20206;20207;20208;20209	20207			6	
AIAVLTSGGDAQGMNAAVR	0	Unmodified	1800.9152	0.9152311	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.1	0.7	2	5	3							4		5	1	58.794	58.129	2;3	1.9056E-138	50971	160511_QHF_FH_JSI9i_2	292.35	283.94			1.1958	1.0757	12.981	9	4	Median	1.1723	0.99894	6.7137	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2738	1.3013	12.921	4	3	Linear	1.2655	1.3097	NaN	1	1	Median	796750000	410660000	386090000	308140000	153970000	154170000	0	0	0	465580000	242870000	222710000	23034000	13821000	9212900	2444	897	2303	14816;14817;14818;14819;14820;14821;14822;14823;14824;14825	20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220	20215			11	
AIAVLTSGGDAQGMNAAVR	0	Oxidation (M)	1816.9101	0.91014572	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			56.089	45.476	2	0.011778	25226	160513_QHF_FH_JSI10Kac_4	66.262	53.307			1.1648	1.2302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1648	1.2302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1027200	571960	455230	0	0	0	1027200	571960	455230	0	0	0	0	0	0	2445	897	2303	14826	20221	20221		461	1	
AIAVMEEFR	0	Unmodified	1064.5325	0.5324659	4031	Q96DT5	DNAH11	Dynein heavy chain 11, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	71.215	70.447	2	0.0028899	60666	160511_QHF_FH_JSI12i_2	62.717	43.24			0.97793	0.9815	4.4317	5	0	Median	1.2517	1.058	NaN	1	0	Median	0.79802	0.97694	NaN	1	0	Median	1.0123	1.0127	NaN	1	0	Median	0.90265	0.96037	3.0776	2	0	Median	605530000	309640000	295890000	92319000	41884000	50435000	129030000	66348000	62679000	237360000	134600000	102770000	146820000	66807000	80011000	2446	4031	2304	14827;14828;14829;14830;14831	20222;20223;20224;20225;20226;20227;20228	20222			7	
AIAVTVQEMVTK	1	Unmodified	1288.7061	0.70607317	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	64.018	63.111	2	2.2445E-11	54543	160511_QHF_FH_JSI12i_2	153.1	122.78			0.93951	0.83423	10.65	6	0	Linear	1.3216	1.0762	NaN	1	0	Median	0.82597	0.95919	5.2008	2	0	Median	1.0293	0.98466	NaN	1	0	Median	0.83411	0.883	16.265	2	0	Median	661060000	349310000	311750000	27084000	13519000	13565000	260760000	131740000	129020000	42410000	20029000	22381000	330810000	184020000	146790000	2447	5616	2305	14832;14833;14834;14835;14836;14837	20229;20230;20231;20232;20233;20234;20235;20236;20237;20238	20231			10	
AIAYHVLAAYYSHLEGAR	0	Unmodified	2004.0217	0.02174508	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	1	3	77.063	68.614	3;4	1.1708E-17	37880	160513_QHF_FH_JSI10Kac_6	142.01	132.08			0.91394	0.97539	13.295	8	2	Median	1.3078	1.0968	6.3075	2	0	Median	0.77326	0.91587	2.6946	2	0	Median	1.1983	1.141	NaN	1	0	Median	0.86564	0.92651	14.089	3	2	Median	961760000	496930000	464830000	361580000	175790000	185800000	409710000	224570000	185140000	49767000	23392000	26374000	140700000	73175000	67523000	2448	405	2306	14838;14839;14840;14841;14842;14843;14844;14845	20239;20240;20241;20242;20243;20244;20245;20246;20247;20248	20246			9	
AIAYLFPSGLFEK	1	Unmodified	1454.781	0.78095267	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	3	2	2	3	97.642	94.25	2	9.6766E-20	46755	160513_QHF_FH_JSI11Kac_6	151.15	129.4			0.97079	0.97743	20.165	10	2	Median	1.1491	0.96103	18.882	3	1	Median	0.72327	0.86453	35.347	2	1	Median	1.1525	1.119	25.091	2	0	Median	0.90612	1.192	12.48	3	0	Plateau	1484400000	823330000	661060000	347340000	165010000	182330000	288970000	178000000	110970000	248790000	129160000	119630000	599290000	351160000	248140000	2449	2115	2307	14846;14847;14848;14849;14850;14851;14852;14853;14854;14855	20249;20250;20251;20252;20253;20254	20249			5	
AIAYTWFNLQAR	0	Unmodified	1452.7514	0.75138388	159	O00712	NFIB	Nuclear factor 1 B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	83.403	74.946	2	2.3469E-27	41113	160513_QHF_FH_JSI11Kac_6	196.88	156			0.99722	0.94527	18.391	5	3	Median	1.1082	0.93205	NaN	1	0	Median	0.86022	1.032	NaN	1	0	Median	0.91318	0.85296	14.533	2	2	Median	1.1932	1.2779	NaN	1	1	Median	365110000	189440000	175670000	58769000	30769000	28000000	153480000	86047000	67428000	124870000	61098000	63768000	28000000	11528000	16472000	2450	159	2308	14856;14857;14858;14859;14860	20255;20256;20257;20258;20259	20255			5	
AICDHVR	0	Unmodified	869.41777	0.41777049	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	1	4	4	8.2992	8.0594	2;3	0.0024972	5490	160511_QHF_FH_JSI12i_3	68.312	59.54			1.0039	0.98775	21.612	10	0	Median	1.1758	0.98481	NaN	1	0	Median	0.89685	1.1157	NaN	1	0	Median	0.87383	0.86091	13.383	4	0	Median	1.2608	1.3279	19.687	4	0	Median	3516700000	1673600000	1843100000	73966000	33230000	40736000	109450000	56267000	53185000	1981800000	936050000	1045700000	1351500000	648060000	703460000	2451	1503	2309	14861;14862;14863;14864;14865;14866;14867;14868;14869;14870	20260;20261;20262;20263;20264;20265;20266;20267;20268	20267			9	
AIDALREFNEEGALSVLQQFK	1	Unmodified	2377.2278	0.22777469	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			101.38	101.23	3	2.6617E-05	83870	160511_QHF_FH_JSI10i_3	68.369	46.251			0.8384	0.95404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8384	0.95404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147860000	101320000	46544000	0	0	0	147860000	101320000	46544000	0	0	0	0	0	0	2452	326	2310	14871	20269	20269			1	
AIDDNMSLDEIEK	1	Unmodified	1491.6763	0.67628918	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.831	7		2							3	3	1	2	60.592	59.81	2;3	5.45E-84	54286	160511_QHF_FH_JSI10i_1	253.53	202.92			0.83517	0.85985	12.399	8	1	Median	1.0934	0.89618	15.366	2	0	Median	0.86485	1.0064	18.57	3	1	Plateau	0.82455	0.7909	NaN	1	0	Median	0.80865	0.85985	4.887	2	0	Median	4246800000	2189400000	2057400000	1185300000	456020000	729290000	1476000000	903640000	572350000	37365000	24551000	12814000	1548200000	805230000	742950000	2453	1372	2311	14872;14873;14874;14875;14876;14877;14878;14879;14880	20270;20271;20272;20273;20274;20275;20276;20277;20278;20279;20280;20281;20282;20283;20284;20285	20278			16	
AIDDNMSLDEIEK	1	Oxidation (M)	1507.6712	0.67120381	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				1	2	2	4	51.7	46.079	2	0.0003569	41642	160511_QHF_FH_JSI12i_1	113.38	84.209			1.1644	1.2614	78.97	7	5	Median	2.7033	2.2064	NaN	1	1	Median	6.1427	7.1492	NaN	1	1	Median	0.97379	0.93192	NaN	1	0	Median	1.1025	1.1853	43.885	4	3	Median	620530000	163730000	456800000	126390000	36264000	90122000	373980000	65246000	308740000	3346300	1923200	1423000	116810000	60299000	56513000	2454	1372	2311	14881;14882;14883;14884;14885;14886;14887;14888;14889	20286;20287;20288;20289;20290;20291;20292;20293	20286		1007	8	
AIDIILR	0	Unmodified	812.51199	0.51198846	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				58.775	57.79	2	0.042042	50696	160511_QHF_FH_JSI9i_2	46.37	0			0.95188	0.8438	NaN	1	0	Median	0.95188	0.8438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15955000	6268700	9686200	15955000	6268700	9686200	0	0	0	0	0	0	0	0	0	2455	5734	2312	14890	20294	20294			1	
AIDIYEQVGTNAMDSPLLK	1	Unmodified	2077.0402	0.04015684	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									1	3	3	3	91.844	91.507	2;3	5.3068E-11	83263	160511_QHF_FH_JSI12i_1	109.22	85.845			0.76253	0.78113	5.8906	5	1	Median	0.88904	0.71704	NaN	1	0	Median	0.71622	0.81239	5.5507	2	1	Median	0.80225	0.76512	NaN	1	0	Median	0.75967	0.78657	NaN	1	0	Median	202920000	118360000	84560000	19054000	10304000	8749600	83051000	49399000	33652000	47102000	26935000	20167000	53712000	31721000	21991000	2456	1838	2313	14891;14892;14893;14894;14895;14896;14897;14898;14899;14900	20295;20296;20297;20298;20299;20300;20301;20302;20303;20304;20305;20306	20301			12	
AIDLFTDAIK	1	Unmodified	1105.6019	0.60192568	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.96	4	6	3				2	4		5	6	3	5	79.168	74.983	2	4.9103E-14	66563	160511_QHF_FH_JSI12i_2	159.37	142.59			0.93527	0.95518	14.066	17	3	Median	1.1438	0.84335	7.7695	4	1	Linear	0.80497	0.96246	12.262	5	1	Median	0.89024	0.90966	19.824	3	0	Plateau	0.93606	1.0051	18.375	5	1	Median	4449300000	2325900000	2123400000	904130000	475750000	428380000	1175300000	678610000	496650000	1332800000	679760000	653080000	1037000000	491740000	545290000	2457	1707	2314	14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919	20307;20308;20309;20310;20311;20312;20313;20314;20315;20316;20317;20318;20319;20320;20321;20322;20323;20324;20325;20326;20327;20328;20329;20330;20331;20332;20333;20334;20335;20336;20337;20338;20339;20340;20341;20342;20343;20344;20345;20346;20347;20348;20349	20313			43	
AIDMFNK	1	Unmodified	837.40547	0.40547447	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	39.589	39.042	2	0.01534	34885	160511_QHF_FH_JSI10i_1	64.803	23.151			1.0724	1.1232	13.137	4	2	Median	1.6323	1.3882	NaN	1	1	Median	0.99576	1.1546	NaN	1	0	Median	1.0724	1.0569	4.6983	2	1	Median	NaN	NaN	NaN	0	0	Median	659090000	317810000	341280000	158500000	64644000	93860000	102210000	51056000	51151000	398380000	202110000	196270000	0	0	0	2458	611	2315	14920;14921;14922;14923;14924	20350;20351;20352;20353;20354	20351			5	
AIDTIYQTTDFSGIR	0	Unmodified	1699.8417	0.84171503	188	O14672	ADAM10	Disintegrin and metalloproteinase domain-containing protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	72.498	71.546	2	0.00026353	62732	160511_QHF_FH_JSI11i_2	121.08	105.19			2.0923	2.285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0923	2.285	NaN	1	1	Median	23492000	4911100	18581000	0	0	0	0	0	0	7549000	0	7549000	15943000	4911100	11032000	2459	188	2316	14925;14926;14927	20355;20356;20357	20357			3	
AIDTTQLFSLPK	1	Unmodified	1332.7289	0.7289171	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	83.239	82.648	2	1.0976E-10	75349	160511_QHF_FH_JSI11i_1	152.07	100.72			1.0006	1.0377	7.7652	5	1	Median	1.3714	1.1174	NaN	1	0	Median	0.9351	1.1029	NaN	1	0	Median	1.0272	0.98738	NaN	1	0	Median	0.93544	0.98105	7.9401	2	1	Median	254760000	123720000	131040000	48173000	19747000	28425000	73344000	39363000	33981000	61705000	29425000	32280000	71538000	35183000	36355000	2460	2768	2317	14928;14929;14930;14931;14932	20358;20359;20360;20361;20362;20363;20364	20359			7	
AIEAAPQEPEQK	1	Unmodified	1309.6514	0.65139506	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.79	7				1	1				1	2	3	3	23.502	21.343	2;3	2.0016E-07	18601	160511_QHF_FH_JSI12i_1	132.78	107.86			1.1003	1.1512	26.596	9	4	Median	1.0417	0.86269	NaN	1	0	Median	0.71041	0.83866	26.662	2	1	Median	1.3231	1.2798	22.086	3	2	Median	1.1003	1.1512	17.634	3	1	Plateau	2276800000	1235600000	1041300000	498620000	263050000	235570000	521940000	290750000	231200000	545050000	268410000	276630000	711200000	413350000	297850000	2461	4010	2318	14933;14934;14935;14936;14937;14938;14939;14940;14941	20365;20366;20367;20368;20369;20370;20371;20372;20373;20374	20367			9	
AIEALLQYWINTLQGK	1	Unmodified	1860.0145	0.014534437	4869	Q9HD23	MRS2	Magnesium transporter MRS2 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	100.31	94.59	2;3	6.5813E-103	55688	160513_QHF_FH_JSI10Kac_6	278.13	227.03			0.95291	1.1312	8.9428	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95291	1.1312	8.9428	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	291230000	140180000	151050000	0	0	0	291230000	140180000	151050000	0	0	0	0	0	0	2462	4869	2319	14942;14943;14944;14945;14946	20375;20376;20377;20378;20379;20380	20380			6	
AIEALSGK	1	Unmodified	787.44397	0.44396847	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		2	2	21.637	20.99	2	0.0023517	17484	160511_QHF_FH_JSI12i_2	78.77	30.01			2.0853	2.0087	32.752	4	3	Median	2.0037	1.6964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0688	2.0628	51.38	2	1	Median	2.1703	2.3785	NaN	1	1	Median	308860000	107440000	201420000	70576000	24357000	46219000	0	0	0	177630000	54126000	123510000	60649000	28954000	31696000	2463	132	2320	14947;14948;14949;14950;14951	20381;20382;20383;20384;20385	20383			5	
AIEAVAISPWK	1	Unmodified	1183.6601	0.66010926	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.06	2	4	4					5		3	3	5	4	71.787	67.747	2	9.8368E-10	59089	160511_QHF_FH_JSI12i_2	136.63	108.24			0.95654	0.91824	18.804	15	3	Median	1.0807	0.91437	14.031	3	0	Median	0.7622	0.91824	14.397	3	0	Median	1.0223	1.0172	15.922	5	2	Median	0.88643	0.98416	31.494	4	1	Median	1481000000	762230000	718770000	280520000	141880000	138650000	267580000	142290000	125300000	575150000	292940000	282210000	357740000	185130000	172610000	2464	4715	2321	14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962;14963;14964;14965;14966	20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400;20401;20402;20403;20404;20405;20406;20407;20408;20409	20390			24	
AIEDDLMK	1	Unmodified	933.44773	0.44773322	2838	Q4L180	FILIP1L	Filamin A-interacting protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	73.153	72.526	2	0.051162	64013	160511_QHF_FH_JSI9i_2	37.021	0			1.4844	1.3802	61.7	4	0	Median	1.3455	1.1362	NaN	1	0	Median	2.0899	2.5418	NaN	1	0	Median	1.6376	1.6765	NaN	1	0	Median	0.59072	0.59545	NaN	1	0	Median	453570000	190190000	263380000	92441000	41507000	50934000	115510000	39531000	75984000	161940000	63164000	98779000	83669000	45990000	37679000	2465	2838	2322	14967;14968;14969;14970	20410;20411;20412;20413;20414	20410			5	
AIEDEGGNPDEIEITSEGNK	1	Unmodified	2115.9444	0.94440178	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	50.078	49.355	2;3	1.3086E-99	44798	160511_QHF_FH_JSI12i_1	260.12	240.73			0.91599	0.96068	21.495	6	1	Median	0.85456	0.71822	16.194	2	1	Median	0.83998	0.99491	7.9984	2	0	Median	1.2327	1.1741	NaN	1	0	Median	0.94842	0.9816	NaN	1	0	Median	264040000	134180000	129860000	82049000	42877000	39172000	91157000	50434000	40723000	38183000	14615000	23567000	52652000	26257000	26395000	2466	2670	2323	14971;14972;14973;14974;14975;14976;14977	20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426	20418			11	
AIEDEGGNPDEIEITSEGNKK	2	Unmodified	2244.0394	0.039364797	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	42.898	42.243	2;3	1.0399E-22	38440	160511_QHF_FH_JSI12i_1	158.73	150.34			1.02	1.0967	25.195	4	1	Linear	0.73473	0.60117	NaN	1	0	Median	0.81322	0.94474	NaN	1	0	Median	1.0964	1.084	NaN	1	0	Median	0.79553	0.83856	NaN	1	1	Median	749860000	379530000	370330000	101130000	54943000	46192000	197860000	96045000	101820000	228910000	101730000	127180000	221950000	126810000	95141000	2467	2670	2324	14978;14979;14980;14981;14982;14983	20427;20428;20429;20430;20431;20432;20433;20434;20435;20436	20430			10	
AIEDGNLEEMEEEVR	0	Unmodified	1761.7727	0.77270877	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	64.869	64.252	2	2.4385E-16	58483	160511_QHF_FH_JSI11i_1	116.24	110			0.99936	1.0133	26.291	5	2	Median	0.96409	0.82307	NaN	1	0	Median	0.61725	0.73066	NaN	1	0	Median	1.3903	1.3236	NaN	1	0	Median	1.1138	1.1395	16.604	2	2	Median	165030000	84802000	80227000	28304000	15039000	13265000	37537000	21367000	16170000	39703000	19267000	20436000	59485000	29128000	30356000	2468	1736	2325	14984;14985;14986;14987;14988;14989	20437;20438;20439;20440;20441;20442;20443	20438			7	
AIEDQLK	1	Unmodified	815.43888	0.43888309	3557	Q8N6M0	OTUD6B	OTU domain-containing protein 6B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.844	20.352	2	0.040857	17766	160511_QHF_FH_JSI12i_1	49.358	9.0902			0.79946	0.85265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79946	0.85265	NaN	1	1	Median	44651000	27894000	16756000	0	0	0	0	0	0	0	0	0	44651000	27894000	16756000	2469	3557	2326	14990	20444	20444			1	
AIEEGTLEEIEEEVR	0	Unmodified	1744.8367	0.83668923	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	3	1	3	81.7	81.404	2	3.3694E-21	74181	160511_QHF_FH_JSI11i_1	171.05	146.2			1.1339	1.191	30.475	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0962	1.2551	39.343	2	2	Median	1.5592	1.4927	NaN	1	0	Median	0.87459	0.91668	NaN	1	1	Median	100770000	49714000	51060000	0	0	0	53941000	27798000	26143000	25591000	12766000	12826000	21242000	9150200	12092000	2470	1737	2327	14991;14992;14993;14994;14995;14996;14997;14998;14999;15000	20445;20446;20447;20448;20449;20450;20451;20452;20453;20454;20455	20445			11	
AIEEGTLEEIEEEVRQK	1	Unmodified	2000.9902	0.99022976	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.858	78.858	3	0.0060719	70397	160511_QHF_FH_JSI11i_3	48.623	38.523			1.83	1.725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.83	1.725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37625000	16684000	20941000	0	0	0	0	0	0	37625000	16684000	20941000	0	0	0	2471	1737	2328	15001	20456	20456			1	
AIEEGVNHMWTVSAFQQHPR	0	Unmodified	2336.112	0.11203343	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	62.481	61.82	3;4	4.179E-12	52162	160511_QHF_FH_JSI10i_3	139.11	125.09			1.6886	1.5719	35.102	5	2	Median	NaN	NaN	NaN	0	0	Median	0.82517	0.93861	2.4493	2	0	Median	1.8609	1.7176	12.532	2	1	Median	1.8297	1.844	NaN	1	1	Median	358530000	154530000	204000000	0	0	0	137260000	78157000	59101000	139080000	47524000	91558000	82190000	28849000	53341000	2472	1596;3725	2329	15002;15003;15004;15005;15006	20457;20458;20459;20460;20461;20462	20460			6	
AIEEGVNHMWTVSAFQQHPR	0	Oxidation (M)	2352.1069	0.10694805	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			61.255	52.528	4	0.002783	27974	160513_QHF_FH_JSI9Kac_6	59.983	52.79			1.0917	1.0939	4.8716	2	1	Median	1.218	1.0569	NaN	1	1	Median	0.97849	1.1323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28141000	12311000	15830000	13853000	5447600	8405200	14288000	6863100	7424600	0	0	0	0	0	0	2473	1596;3725	2329	15007;15008	20463;20464	20463		1266	2	
AIEEQMVAAK	1	Unmodified	1088.5536	0.55359527	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	30.138	29.692	2	1.2463E-05	26534	160511_QHF_FH_JSI12i_1	113.66	67.978			0.37051	0.4126	136.89	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91871	1.0862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.14942	0.15673	NaN	1	1	Median	233880000	157850000	76029000	0	0	0	110400000	64676000	45723000	0	0	0	123480000	93177000	30306000	2474	4623	2330	15009;15010	20465;20466;20467	20465			3	
AIEFLNNPPEEAPR	0	Unmodified	1595.7944	0.79437091	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	61.731	60.996	2	1.1348E-09	52358	160511_QHF_FH_JSI12i_2	102.4	87.425			1.1116	1.027	3.2698	2	1	Median	1.1721	1.0035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0543	1.051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52303000	25547000	26756000	21090000	9184800	11905000	0	0	0	31213000	16363000	14851000	0	0	0	2475	2831	2331	15011;15012;15013;15014	20468;20469;20470;20471;20472	20469			5	
AIEFLSAFK	1	Unmodified	1024.5593	0.55933258	2807	Q32P41	TRMT5	tRNA (guanine(37)-N1)-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.668	80.892	2	1.6335E-06	71010	160511_QHF_FH_JSI11i_2	131.06	66.024			0.94743	1.0686	21.153	4	1	Median	1.5959	1.3439	NaN	1	1	Median	0.90687	1.1446	NaN	1	0	Median	0.9898	0.99756	NaN	1	0	Median	0.74487	0.81615	NaN	1	0	Median	59099000	33084000	26015000	8714000	4325600	4388400	11607000	7175300	4432100	24035000	13433000	10602000	14743000	8150000	6592600	2476	2807	2332	15015;15016;15017;15018	20473;20474;20475;20476;20477;20478;20479;20480	20477			8	
AIEGFNQSSHQK	1	Unmodified	1344.6422	0.64222736	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	2	3	2	16.01	14.526	2;3	6.4562E-32	11946	160511_QHF_FH_JSI11i_3	169.89	141.56			1.0269	1.0835	15.726	8	2	Median	1.0212	0.86796	20.306	2	1	Median	0.95357	1.1619	9.8178	2	1	Median	1.0797	1.0433	16.872	2	0	Median	1.0613	1.0877	0.59854	2	0	Median	1074600000	516190000	558360000	114490000	45788000	68702000	110790000	49615000	61176000	218860000	88127000	130730000	630420000	332660000	297760000	2477	2728	2333	15019;15020;15021;15022;15023;15024;15025;15026;15027	20481;20482;20483;20484;20485;20486;20487;20488;20489;20490;20491	20481			11	
AIEHADGGVAAGVAVLDNPYPV	0	Unmodified	2134.0695	0.069483134	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	84.272	83.706	2	5.4992E-13	76300	160511_QHF_FH_JSI12i_1	121.04	108.06			1.1167	0.91093	17.153	3	2	Median	1.1167	0.91093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1701	1.1174	NaN	1	1	Median	0.77543	0.79466	NaN	1	0	Median	71053000	32802000	38250000	18279000	7877300	10402000	0	0	0	21539000	8242900	13296000	31234000	16682000	14552000	2478	1629	2334	15028;15029;15030;15031	20492;20493;20494;20495;20496	20494			5	
AIEHMFYR	0	Unmodified	1065.5066	0.5065855	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	33.912	33.407	3	0.00083058	28201	160511_QHF_FH_JSI12i_3	71.922	32.276			0.99451	1.104	15.957	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99451	1.104	NaN	1	0	Median	1.2482	1.1238	NaN	1	0	Median	0.83667	0.84524	NaN	1	0	Median	123630000	66434000	57200000	0	0	0	20422000	9695100	10726000	47580000	25424000	22156000	55632000	31315000	24317000	2479	2793	2335	15032;15033;15034	20497;20498	20498			1	
AIEIDNK	1	Unmodified	801.42323	0.42323303	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	1					1					1	1		25.503	17.895	2	0.005502	15457	160511_QHF_FH_JSI10i_1	82.305	3.6895			0.35018	0.33997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35018	0.33997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9612400	7606700	2005800	0	0	0	0	0	0	9612400	7606700	2005800	0	0	0	2480	611	2336	15035;15036	20499;20500	20500			2	
AIEINPDSAQPYK	1	Unmodified	1444.7198	0.71980898	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.96	8	4				6	3			3	6	6	6	52.341	47.466	2;3	3.4959E-41	43038	160511_QHF_FH_JSI12i_1	207.34	207.34			0.89881	0.82034	27.512	20	6	Plateau	1.0038	0.82295	20.317	3	2	Plateau	0.77591	0.91438	20.365	6	1	Median	1.009	0.98765	37.066	5	1	Median	0.91886	0.99359	33.281	6	2	Median	7652400000	3816400000	3836000000	1637500000	787700000	849790000	1769400000	969300000	800100000	1853700000	870610000	983060000	2391800000	1188800000	1203100000	2481	1707	2337	15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053;15054;15055;15056;15057	20501;20502;20503;20504;20505;20506;20507;20508;20509;20510;20511;20512;20513;20514;20515;20516;20517;20518;20519;20520;20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538	20508			38	
AIEINPDSAQPYKWR	1	Acetyl (K)	1828.9108	0.91079765	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	1	0	0	1			By MS/MS		15	0								1				1		77.626	66.99	2	2.2749E-05	35620	160513_QHF_FH_JSI11Kac_5	104.32	80.948			0.30995	0.30442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30995	0.30442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5179000	3855000	1324000	0	0	0	0	0	0	5179000	3855000	1324000	0	0	0	2482	1707	2338	15058	20539	20539	1720		1	
AIEIYTDMGR	0	Unmodified	1167.5594	0.55940893	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	52.013	51.225	2	0.00032309	44273	160511_QHF_FH_JSI11i_2	78.113	56.585			1.2155	1.3369	18.865	6	2	Median	1.5484	1.3773	NaN	1	0	Median	1.121	1.3554	6.1519	2	1	Median	1.6057	1.5802	31.445	2	1	Median	1.0182	1.1351	NaN	1	0	Median	381530000	173570000	207960000	46401000	17418000	28983000	124340000	62994000	61349000	113270000	43514000	69758000	97515000	49645000	47870000	2483	1838	2339	15059;15060;15061;15062;15063;15064	20540;20541;20542;20543;20544;20545;20546;20547	20545			8	
AIELDKK	2	Unmodified	815.47527	0.4752686	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	1			By MS/MS		15	0								1				1		60.088	49.192	2	0.049939	26865	160513_QHF_FH_JSI11Kac_5	83.614	4.4983			0.94096	0.92825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94096	0.92825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46565000	24015000	22550000	0	0	0	0	0	0	46565000	24015000	22550000	0	0	0	2484	1793	2340	15065	20548	20548			1	
AIELFHSYR	0	Unmodified	1134.5822	0.58219329	1564	P43378	PTPN9	Tyrosine-protein phosphatase non-receptor type 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	45.491	45.41	3	0.014905	38865	160511_QHF_FH_JSI12i_3	41.664	29.709			2.183	2.0388	50.482	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.523	1.4314	50.024	2	2	Median	0.75247	0.76705	NaN	1	1	Median	61659000	24760000	36898000	0	0	0	0	0	0	45377000	16027000	29350000	16282000	8733600	7548300	2485	1564	2341	15066;15067;15068	20549;20550;20551	20551			3	
AIELFSVGQGPAK	1	Unmodified	1315.7136	0.71360139	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.39	4	4	2				2	5		5	3	4	5	70.919	66.473	2;3	7.5152E-08	35315	160513_QHF_FH_JSI11Kac_4	108.67	79.58			0.77911	0.8007	47.855	16	14	Median	0.95967	0.78632	51.823	5	5	Median	0.69429	0.82438	11.837	3	2	Median	0.80561	0.81711	47.427	4	3	Median	0.78188	0.84989	68.459	4	4	Median	1665300000	1020200000	645170000	336800000	202280000	134510000	246550000	153040000	93513000	584590000	351260000	233330000	497400000	313590000	183810000	2486	1351	2342	15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085	20552;20553;20554;20555;20556;20557;20558;20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569	20558			17	
AIELLQEFSDQHPENAAEIK	1	Unmodified	2281.1226	0.12264092	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	79.619	79.108	3	6.5949E-19	70348	160511_QHF_FH_JSI10i_2	157.88	146.26			0.97277	0.97351	24.372	8	4	Median	1.0383	0.87921	NaN	1	0	Median	0.79823	0.99322	NaN	1	0	Median	1.1701	1.1404	31.02	4	4	Median	0.86699	0.91807	15.211	2	0	Median	1137200000	504210000	633000000	92084000	36138000	55946000	213470000	115880000	97585000	530570000	210580000	319980000	301090000	141600000	159490000	2487	602	2343	15086;15087;15088;15089;15090;15091;15092;15093	20570;20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581	20579			12	
AIELNPANAVYFCNR	0	Unmodified	1750.8461	0.8460889	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.4	0.49	3	2										3	2	75.327	74.697	2;3	4.3967E-05	68091	160511_QHF_FH_JSI12i_1	79.659	55.277			1.549	1.584	40.207	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7146	1.6966	49.235	3	1	Median	1.3994	1.4789	NaN	1	0	Median	112720000	53901000	58822000	0	0	0	0	0	0	89155000	43637000	45518000	23568000	10264000	13303000	2488	372	2344	15094;15095;15096;15097;15098	20582;20583;20584;20585	20585			4	
AIELSLK	1	Unmodified	772.46945	0.46945494	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.238	47.256	2	0.017903	40619	160511_QHF_FH_JSI11i_2	60.76	7.2056			0.99899	1.0205	2.9288	4	0	Median	1.1518	1.0139	NaN	1	0	Median	0.82737	1.0075	NaN	1	0	Median	1.0266	1.0271	NaN	1	0	Median	0.97214	1.075	NaN	1	0	Median	175410000	89328000	86087000	30489000	14998000	15491000	35837000	18166000	17671000	45551000	20651000	24901000	63538000	35513000	28025000	2489	3883	2345	15099;15100;15101;15102	20586;20587;20588;20589	20589			4	
AIEMLGGELGSK	1	Unmodified	1203.6169	0.61692381	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.18	3	4	1				3	2		3	4	4	2	62.76	58.209	2	5.3031E-16	49841	160511_QHF_FH_JSI12i_2	162.36	138.21			1.3164	1.1176	24.426	13	7	Median	1.3254	1.11	5.9273	3	2	Plateau	0.90757	1.092	27.017	4	2	Median	1.2607	1.269	29.451	4	3	Median	1.4058	1.5584	23.089	2	0	Median	5493800000	2261000000	3232800000	979710000	373300000	606410000	1706400000	711410000	994990000	2036500000	877740000	1158700000	771250000	298570000	472680000	2490	887	2346	15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115	20590;20591;20592;20593;20594;20595;20596;20597;20598;20599;20600;20601;20602;20603;20604;20605;20606	20592			17	
AIEMLGGELGSK	1	Oxidation (M)	1219.6118	0.61183843	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	9.2	5.88		2					3			1	2		2	53.368	42.823	2	0.00032802	36821	160511_QHF_FH_JSI12i_2	83	61.536			0.63222	0.7477	45.798	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63222	0.7477	45.798	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10072000	7118000	2953600	0	0	0	10072000	7118000	2953600	0	0	0	0	0	0	2491	887	2346	15116;15117;15118;15119;15120	20607;20608;20609;20610;20611	20607		445	5	
AIENELLAR	0	Unmodified	1027.5662	0.56620887	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				43.352	42.3	2	0.015843	36987	160511_QHF_FH_JSI9i_2	43.734	12.998			1.6788	1.4303	NaN	1	0	Median	1.6788	1.4303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207790000	55054000	152730000	207790000	55054000	152730000	0	0	0	0	0	0	0	0	0	2492	1629	2347	15121	20612	20612			1	
AIENHNKK	2	Acetyl (K)	994.51959	0.51959303	4174	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		5.8293	-3.703	2	0.0012508	1912	160513_QHF_FH_JSI11Kac_5	113.7	52.908			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1601400	1601400	0	0	0	0	0	0	0	1601400	1601400	0	0	0	0	2493	4174	2348	15122	20613	20613	3067		1	
AIENIDTLTNLESLFLGK	1	Unmodified	1990.0623	0.062272491	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	3	1	102.51	102.42	2;3	1.3711E-22	91014	160511_QHF_FH_JSI10i_2	215.87	195.66			0.89105	0.9019	15.272	6	1	Median	1.0688	0.92882	NaN	1	1	Median	0.7066	0.86415	3.6928	2	0	Median	0.89105	0.88532	4.9794	2	0	Median	1.1614	1.2716	NaN	1	0	Median	408830000	204090000	204740000	89295000	38003000	51292000	89199000	52087000	37112000	168010000	92218000	75789000	62328000	21777000	40550000	2494	2673	2349	15123;15124;15125;15126;15127;15128;15129;15130	20614;20615;20616;20617;20618;20619;20620;20621	20621			8	
AIENLIGKPTEK	2	Acetyl (K)	1353.7504	0.75038083	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.661						3	4	1			2	1	5	67.401	57.057	2;3	5.6099E-05	29876	160513_QHF_FH_JSI12Kac_3	94.297	73.967			0.64717	0.66379	164.73	6	1	Median	NaN	NaN	NaN	0	0	Median	0.5171	0.61704	NaN	1	0	Median	0.66051	0.63177	NaN	1	0	Median	0.7376	0.80889	198.36	4	1	Median	63861000	32628000	31233000	0	0	0	22481000	12621000	9859900	3557700	2012000	1545700	37822000	17994000	19828000	2495	4253	2350	15131;15132;15133;15134;15135;15136;15137;15138	20622;20623;20624;20625;20626;20627;20628	20623	3085		7	
AIENLIGKPTEK	2	Unmodified	1311.7398	0.73981614	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	38.552	38.372	2;3	0.00020643	32685	160511_QHF_FH_JSI12i_3	82.069	73.937			0.83149	0.85867	55.057	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83149	0.85867	55.057	2	2	Median	228630000	140990000	87639000	0	0	0	0	0	0	0	0	0	228630000	140990000	87639000	2496	4253	2350	15139;15140	20629;20630	20629			2	
AIEPNDYTGK	1	Unmodified	1106.5244	0.52440364	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	27.241	23.288	2	5.4218E-10	20622	160511_QHF_FH_JSI12i_1	138.98	92.549			0.9728	0.9465	10.326	7	0	Median	1.2527	1.0339	NaN	1	0	Median	0.74282	0.86914	10.18	2	0	Median	0.93152	0.90636	6.1285	2	0	Median	0.9881	1.0558	1.5346	2	0	Median	1933000000	1075700000	857260000	476630000	245550000	231080000	406060000	233000000	173060000	392360000	204920000	187440000	657940000	392260000	265680000	2497	494	2351	15141;15142;15143;15144;15145;15146;15147	20631;20632;20633;20634;20635;20636;20637;20638;20639;20640;20641;20642	20633			12	
AIEPPPLDAVIEAEHTLR	0	Unmodified	1970.0473	0.047291129	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	94.422	94.138	3	2.1223E-17	82900	160511_QHF_FH_JSI11i_2	163.35	142.41			1.0143	1.0496	9.2634	7	3	Median	1.0102	0.85947	NaN	1	0	Median	0.71423	0.88999	NaN	1	0	Median	1.0206	1.0503	0.34718	3	2	Median	0.94989	1.029	7.8006	2	1	Median	2676100000	1342800000	1333400000	251600000	122450000	129150000	387760000	223190000	164560000	1441200000	708850000	732310000	595620000	288290000	307330000	2498	2265	2352	15148;15149;15150;15151;15152;15153;15154	20643;20644;20645;20646;20647;20648;20649;20650;20651;20652;20653;20654	20650			12	
AIEPPPLDAVIEAEHTLRELDALDANDELTPLGR	0	Unmodified	3692.8897	0.88973444	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			102.94	102.89	4	0.0002215	91390	160511_QHF_FH_JSI10i_2	37.499	32.69			0.76565	0.92145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76565	0.92145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56701000	27073000	29628000	0	0	0	56701000	27073000	29628000	0	0	0	0	0	0	2499	2265	2353	15155	20655	20655			1	
AIEPQKEEADENYNSVNTR	1	Unmodified	2206.0138	0.013818748	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	28.509	27.861	3	3.438E-10	24058	160511_QHF_FH_JSI9i_2	126	93.073			0.94535	0.99988	18.974	6	0	Median	1.4218	1.2654	NaN	1	0	Median	0.69187	0.86217	NaN	1	0	Median	1.0746	1.0824	25.905	2	0	Median	0.94535	0.98219	17.208	2	0	Median	218610000	100700000	117900000	48332000	19354000	28977000	30156000	15334000	14822000	90885000	44489000	46396000	49233000	21525000	27708000	2500	2313	2354	15156;15157;15158;15159;15160;15161;15162	20656;20657;20658;20659;20660;20661;20662;20663;20664	20658			9	
AIEQADLLQEEDESPR	0	Unmodified	1841.8643	0.86430096	1972	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	53.517	52.88	2;3	1.021E-51	46978	160511_QHF_FH_JSI9i_1	213.82	202.19			1.0848	1.0693	6.8483	9	3	Median	1.3919	1.1437	0.86901	2	0	Median	0.8468	0.996	2.9679	2	0	Median	1.0906	1.0357	3.5675	3	2	Plateau	1.0865	1.1524	1.7524	2	1	Median	831960000	400720000	431230000	165140000	71626000	93518000	196940000	102450000	94495000	300140000	136750000	163390000	169730000	89902000	79824000	2501	1972	2355	15163;15164;15165;15166;15167;15168;15169;15170;15171	20665;20666;20667;20668;20669;20670;20671;20672	20671			8	
AIESGDTDLVFTVLLHLK	1	Unmodified	1970.0724	0.072443247	4667	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	96.929	87.675	3	2.3945E-12	47933	160513_QHF_FH_JSI12Kac_6	130.29	113.99			1.0705	1.0084	35.311	2	0	Median	1.5154	1.2944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75627	0.78556	NaN	1	0	Median	217120000	105720000	111400000	101640000	40020000	61623000	0	0	0	0	0	0	115480000	65705000	49776000	2502	4667	2356	15172;15173	20673;20674	20674			1	
AIESMEQQLSELK	1	Unmodified	1504.7443	0.74430917	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	67.77	67.05	2	8.7199E-31	57684	160511_QHF_FH_JSI12i_2	191.53	172.9			0.8427	0.79143	17.22	5	1	Median	0.8427	0.6812	NaN	1	1	Median	0.5851	0.6836	NaN	1	0	Median	0.84549	0.83433	7.4658	2	0	Median	0.93209	1.0199	NaN	1	0	Median	586150000	345470000	240680000	59244000	25616000	33629000	170090000	112490000	57600000	294790000	172010000	122770000	62034000	35358000	26677000	2503	1016	2357	15174;15175;15176;15177;15178	20675;20676;20677;20678;20679	20676			5	
AIESMEQQLSELKK	2	Unmodified	1632.8393	0.83927219	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	59.323	58.534	3	1.3825E-10	51764	160511_QHF_FH_JSI11i_3	110.77	91.7			1.0426	1.1667	67.968	5	3	Median	0.60734	0.53255	NaN	1	1	Median	0.66136	0.82036	NaN	1	0	Median	2.9248	2.9361	NaN	1	1	Median	1.4278	1.5176	37.188	2	1	Median	621120000	277180000	343940000	103790000	62103000	41688000	111030000	52538000	58492000	104210000	24983000	79232000	302090000	137560000	164530000	2504	1016	2358	15179;15180;15181;15182;15183;15184	20680;20681;20682;20683;20684	20680			5	
AIETTDIISR	0	Unmodified	1117.5979	0.59790293	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	3	3	1	45.397	42.234	2	1.3279E-05	37611	160511_QHF_FH_JSI9i_1	102.07	84.827			1.0121	1.0308	23.343	8	1	Median	1.4566	1.2083	NaN	1	0	Median	0.88979	1.0278	35.234	3	1	Median	1.0595	1.0302	22.272	3	0	Median	0.9669	1.0314	NaN	1	0	Median	1190900000	600200000	590700000	192140000	94124000	98011000	377570000	200330000	177250000	364440000	181750000	182700000	256740000	124000000	132740000	2505	4114	2359	15185;15186;15187;15188;15189;15190;15191;15192	20685;20686;20687;20688;20689;20690;20691	20689			7	
AIETVYAAYLPK	1	Unmodified	1337.7231	0.72310344	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		78.652	68.043	2	4.6804E-07	36149	160513_QHF_FH_JSI11Kac_5	131.44	94.248			1.2829	1.26	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2829	1.26	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2919900	1100600	1819400	0	0	0	0	0	0	2919900	1100600	1819400	0	0	0	2506	1499	2360	15193	20692	20692			1	
AIEVGRENR	0	Unmodified	1042.552	0.55195579	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							2	3			10.157	9.5904	2;3	0.0022236	7256	160511_QHF_FH_JSI10i_3	62.823	14.029			0.76324	0.87739	7.6847	5	1	Median	1.1066	0.92453	0.12339	2	0	Median	0.6511	0.78686	5.95	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	346880000	177460000	169420000	119000000	52061000	66942000	227870000	125400000	102480000	0	0	0	0	0	0	2507	1386	2361	15194;15195;15196;15197;15198	20693;20694;20695;20696	20694			4	
AIEVLSDEHAR	0	Unmodified	1238.6255	0.62551466	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		6								2	2	1	1	28.576	27.667	2;3	0.00042885	24184	160511_QHF_FH_JSI10i_2	64.918	58.115			1.1385	1.1992	24.457	4	1	Median	1.7104	1.4666	NaN	1	0	Median	0.77922	0.94751	NaN	1	1	Median	0.98066	0.98052	NaN	1	0	Median	1.3218	1.4758	NaN	1	0	Median	161440000	83710000	77725000	41304000	19608000	21697000	36297000	21226000	15070000	53433000	28042000	25391000	30401000	14834000	15567000	2508	4863	2362	15199;15200;15201;15202;15203;15204	20697;20698;20699;20700	20699			4	
AIFAGYK	1	Unmodified	768.41703	0.41702544	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.37	6.65	3	3	4				1	4	4	4	6	5	4	38.041	33.116	2	0.005487	27759	160511_QHF_FH_JSI12i_3	94.669	84.919			0.92645	1.0337	16.203	19	0	Median	1.1904	0.99826	5.2218	4	0	Median	1.1039	1.0639	13.256	6	0	Linear	1.0936	1.0337	22.953	5	0	Median	0.82037	0.8747	7.8327	4	0	Median	15457000000	6865300000	8592100000	3256400000	1256600000	1999800000	3824900000	1798900000	2026000000	4335100000	1873100000	2462100000	4041000000	1936700000	2104300000	2509	1135	2363	15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221;15222;15223	20701;20702;20703;20704;20705;20706;20707;20708;20709;20710;20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723;20724;20725;20726;20727;20728;20729;20730;20731;20732;20733;20734;20735;20736	20732			36	
AIFAGYKR	1	Acetyl (K)	966.5287	0.52870115	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	49.294	39.601	2	9.6745E-10	21574	160513_QHF_FH_JSI11Kac_6	153.26	117.08			0.41059	0.40067	30.32	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34694	0.32335	NaN	1	0	Median	0.48591	0.49647	NaN	1	0	Median	73825000	45953000	27872000	0	0	0	0	0	0	53848000	31792000	22057000	19977000	14162000	5815000	2510	1135	2364	15224;15225	20737	20737	987		1	
AIFAVLTSVLTK	1	Unmodified	1261.7646	0.76457433	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	2	1	96.745	91.132	2	2.9595E-31	48061	160513_QHF_FH_JSI9Kac_6	185.71	137.43			0.96486	0.83426	23.376	6	0	Median	1.1211	0.93559	17.169	2	0	Median	0.63564	0.76749	NaN	1	0	Median	1.1128	1.0512	31.73	2	0	Median	0.66228	0.69528	NaN	1	0	Median	1460100000	706570000	753560000	492410000	216630000	275780000	270420000	156740000	113680000	494010000	231450000	262570000	203280000	101750000	101540000	2511	5675	2365	15226;15227;15228;15229;15230;15231	20738;20739;20740;20741;20742;20743;20744;20745;20746	20742			8	
AIFDQLMTFGIEPFK	1	Unmodified	1755.8906	0.89057948	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.21	102.03	2	3.0585E-06	88007	160511_QHF_FH_JSI12i_2	120.84	99.466			1.2165	1.3488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.3488	NaN	1	1	Median	46257000	15358000	30899000	0	0	0	0	0	0	0	0	0	46257000	15358000	30899000	2512	4337	2366	15232	20747	20747			1	
AIFEIVLNR	0	Unmodified	1073.6233	0.62332982	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			78.645	77.259	2	0.00083343	63595	160511_QHF_FH_JSI9i_3	73.26	48.337			0.8264	0.83013	30.189	2	0	Median	0.80408	0.67056	NaN	1	0	Median	0.84934	1.0277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21008000	11601000	9406400	13576000	7374900	6200700	7432200	4226500	3205700	0	0	0	0	0	0	2513	552	2367	15233;15234	20748;20749;20750	20750			3	
AIFEMMQAVLEK	1	Oxidation (M)	1424.7044	0.70435861	5816				yes	yes	0	0	1	0	By MS/MS				2	0		1								1				66.531	65.621	2	0.017774	57786	160511_QHF_FH_JSI9i_2	51.346	13.87	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2514	5816	2368	15235	20751	20751		2759;2760	1	
AIFENTLSTYPK	1	Unmodified	1382.7082	0.70818166	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	59.939	59.039	2	2.2253E-07	51244	160511_QHF_FH_JSI11i_2	131.82	97.566			0.25956	0.26108	45.303	3	0	Median	NaN	NaN	NaN	0	0	Median	0.18189	0.21826	NaN	1	0	Median	0.25956	0.26108	NaN	1	0	Median	0.4681	0.51514	NaN	1	0	Median	252900000	209930000	42969000	0	0	0	74506000	65793000	8712900	132620000	116540000	16081000	45777000	27601000	18175000	2515	2564	2369	15236;15237;15238	20752;20753	20753			2	
AIFFLIFFDVMEAMR	0	Unmodified	1848.9307	0.93067015	5852				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	81.714	81.2	2;3	0.0016996	72348	160511_QHF_FH_JSI9i_1	74.162	62.949	+		0.05667	0.055694	84.946	6	6	Linear	0.19352	0.16271	172.31	2	2	Median	0.0942	0.11054	NaN	1	1	Median	0.19265	0.18752	67.147	2	2	Median	0.15881	0.16177	NaN	1	1	Median	495440000	432930000	62506000	178530000	158930000	19603000	107680000	97938000	9742400	153320000	131570000	21754000	55905000	44498000	11407000	2516	5852	2370	15239;15240;15241;15242;15243;15244	20754;20755;20756;20757;20758;20759;20760;20761	20760			8	
AIFLAAQK	1	Unmodified	860.51199	0.51198846	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	45.231	39.671	2	9.8627E-05	33608	160511_QHF_FH_JSI12i_3	129.96	85.35			0.87495	0.88271	7.1053	7	0	Median	1.2327	1.046	NaN	1	0	Median	0.77914	0.89327	5.1439	2	0	Median	0.90456	0.85864	1.4591	2	0	Median	0.85844	0.89422	1.8323	2	0	Median	811950000	420520000	391430000	8485900	3593000	4892900	165870000	94989000	70884000	268100000	135100000	133000000	369490000	186840000	182650000	2517	5575	2371	15245;15246;15247;15248;15249;15250;15251;15252	20762;20763;20764;20765;20766;20767;20768;20769;20770	20769			9	
AIFLADGK	1	Unmodified	833.4647	0.46470391	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.33	6.13		2						1		1		1	1	44.826	40.483	2	0.0095908	34736	160511_QHF_FH_JSI12i_2	64.265	17.894			0.77796	0.77394	33.606	3	2	Plateau	0.73629	0.63302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2544	1.234	NaN	1	0	Median	0.84759	0.94622	NaN	1	1	Median	233330000	113250000	120080000	108080000	59546000	48533000	0	0	0	4814100	1971700	2842400	120440000	51732000	68706000	2518	4366	2372	15253;15254;15255	20771;20772;20773	20771			3	
AIFLADGNVFTTGFSR	0	Unmodified	1714.8679	0.8678702	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							5	3	4	2	95.657	95.327	2;3	5.0197E-30	82532	160511_QHF_FH_JSI12i_3	225.13	179.99			0.98297	1.054	45.484	10	3	Median	0.97193	0.80863	5.8135	2	1	Median	0.81446	0.99255	15.684	3	1	Median	2.1529	2.0023	35.429	3	1	Median	0.96312	1.054	5.3996	2	0	Median	317700000	136570000	181130000	42066000	19535000	22531000	40143000	21436000	18707000	142920000	45323000	97592000	92572000	50276000	42296000	2519	5411	2373	15256;15257;15258;15259;15260;15261;15262;15263;15264;15265;15266;15267;15268;15269	20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786;20787;20788;20789;20790;20791;20792;20793;20794;20795	20791			22	
AIFLFVDK	1	Unmodified	951.54295	0.54295423	1913	P60520	GABARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	2	3	80.373	76.588	2	0.0017591	68328	160511_QHF_FH_JSI12i_3	85.212	61.239			0.92853	1.0196	22.038	10	1	Median	1.1364	0.95308	32.428	2	0	Median	0.89375	1.0673	12.541	3	0	Median	1.0526	0.9746	13.582	2	0	Median	1.0291	1.0435	27.616	3	1	Plateau	482280000	250580000	231700000	108870000	47798000	61069000	136230000	70928000	65300000	107620000	61154000	46464000	129570000	70698000	58870000	2520	1913	2374	15270;15271;15272;15273;15274;15275;15276;15277;15278;15279	20796;20797;20798;20799;20800;20801;20802;20803;20804;20805;20806;20807;20808;20809;20810;20811	20806			16	
AIFLPQAWLAYMNR	0	Unmodified	1692.881	0.88101784	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	96.36	88.25	2;3	4.5695E-12	49553	160513_QHF_FH_JSI11Kac_6	176.83	142.95			0.96453	0.97804	15.634	9	4	Median	1.2299	1.0418	8.9311	2	0	Median	0.77983	0.93269	8.2007	3	2	Median	1.3936	1.3061	8.0999	2	1	Median	0.93361	0.98587	4.259	2	1	Median	2421300000	1294000000	1127300000	328720000	131840000	196880000	1463800000	876030000	587720000	398380000	165300000	233080000	230460000	120870000	109590000	2521	2993	2375	15280;15281;15282;15283;15284;15285;15286;15287;15288	20812;20813;20814;20815;20816;20817;20818;20819;20820;20821;20822;20823	20813			12	
AIFMIPTNPPPTFR	0	Unmodified	1600.8436	0.8435697	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			8							2	4		2	91.205	90.385	2;3	0.00013061	74114	160511_QHF_FH_JSI9i_3	99.653	93.269			0.80059	0.94765	34.118	8	3	Median	1.3918	1.1596	7.9049	2	0	Median	0.80059	0.94765	34.241	4	2	Median	NaN	NaN	NaN	0	0	Median	0.60632	0.60933	20.395	2	1	Median	124980000	66292000	58685000	25689000	10115000	15574000	44903000	24453000	20450000	0	0	0	54385000	31724000	22661000	2522	2368	2376	15289;15290;15291;15292;15293;15294;15295;15296	20824;20825;20826;20827;20828;20829;20830;20831;20832;20833	20830			9	
AIFQEVHVQSLPQVDR	0	Unmodified	1864.9795	0.97954591	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		66.246	65.479	3	2.6942E-08	57993	160511_QHF_FH_JSI10i_2	118.53	103.37			0.8001	0.99045	10.939	3	2	Plateau	0.93764	0.79603	NaN	1	1	Median	0.79977	0.99045	NaN	1	1	Median	0.89951	0.8961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162190000	94850000	67342000	51546000	27292000	24254000	78856000	47432000	31424000	31789000	20125000	11664000	0	0	0	2523	4258	2377	15297;15298;15299	20834;20835;20836;20837	20837			4	
AIFQQPPVGVR	0	Unmodified	1210.6822	0.68224168	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	52.718	51.984	2	3.1059E-08	44466	160511_QHF_FH_JSI12i_3	122.18	84.016			0.6453	0.71132	18.744	3	0	Plateau	1.0846	0.94969	NaN	1	0	Median	0.77748	0.94492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6453	0.68471	NaN	1	0	Median	116030000	63668000	52367000	31369000	15067000	16302000	37382000	22704000	14678000	0	0	0	47283000	25897000	21387000	2524	3221	2378	15300;15301;15302	20838;20839	20839			0	
AIFQTIQNR	0	Unmodified	1089.5931	0.59309232	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.24			2					3	4	3	3	1	2	45.536	37.653	2	3.4261E-11	20509	160513_QHF_FH_JSI11Kac_6	155.75	107.19			0.90926	0.94002	10.436	9	0	Median	1.2564	1.056	4.2156	3	0	Median	0.80288	0.93917	4.2368	3	0	Plateau	0.95004	0.94002	NaN	1	0	Median	0.81889	0.87796	16.509	2	0	Median	786900000	403910000	382990000	436900000	208970000	227930000	323550000	180380000	143170000	15786000	8319400	7466800	10664000	6239000	4425400	2525	686	2379	15303;15304;15305;15306;15307;15308;15309;15310;15311	20840;20841;20842;20843;20844;20845;20846;20847;20848;20849;20850;20851;20852;20853;20854;20855	20844			16	
AIFSHAAGDNSTLLSFK	1	Unmodified	1777.8999	0.89989861	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	68.389	67.353	2;3	7.7735E-12	56527	160511_QHF_FH_JSI10i_3	152.25	139.08			0.889	0.86039	43.86	6	1	Median	0.67975	0.5637	62.354	2	1	Median	0.88394	1.0252	42.964	2	0	Median	0.9679	0.91253	NaN	1	0	Median	0.81653	0.84499	NaN	1	0	Median	541390000	297910000	243480000	148670000	92998000	55671000	115560000	62137000	53420000	132640000	70157000	62483000	144520000	72614000	71909000	2526	5478	2380	15312;15313;15314;15315;15316;15317	20856;20857;20858;20859;20860;20861;20862;20863;20864;20865;20866	20859			11	
AIFSVYVVNK	1	Unmodified	1138.6386	0.63864553	5506	Q9Y296	TRAPPC4	Trafficking protein particle complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	1	3	69.897	65.465	2	1.0864E-28	35197	160513_QHF_FH_JSI11Kac_6	178.83	121.55			0.78004	0.8207	39.98	5	3	Median	0.4598	0.37371	NaN	1	0	Median	0.55454	0.64796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91517	0.92208	10.796	3	3	Median	284680000	161140000	123530000	38313000	22415000	15899000	43362000	28445000	14918000	0	0	0	203000000	110280000	92716000	2527	5506	2381	15318;15319;15320;15321;15322;15323	20867;20868;20869;20870;20871;20872;20873	20868			7	
AIFSVYVVNK	1	Acetyl (Protein N-term)	1180.6492	0.64921022	5506	Q9Y296	TRAPPC4	Trafficking protein particle complex subunit 4	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			95.201	95.209	2	0.013383	86327	160511_QHF_FH_JSI10i_1	37.558	20.782			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2528	5506	2381	15324	20874	20874			1	
AIFTGHSAVVEDVAWHLLHESLFGSVADDQK	1	Unmodified	3377.6681	0.66805477	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	96.673	89.101	4;5	3.3403E-179	52272	160513_QHF_FH_JSI10Kac_6	324.91	304.03			0.84291	0.93155	8.1545	4	1	Median	NaN	NaN	NaN	0	0	Median	0.74552	0.88722	13.038	2	1	Median	1.0009	0.94745	NaN	1	0	Median	0.87014	0.91592	NaN	1	0	Median	1451000000	903040000	547930000	0	0	0	1129500000	731190000	398280000	80387000	36841000	43546000	241120000	135010000	106110000	2529	2741	2382	15325;15326;15327;15328	20875;20876;20877;20878;20879	20879			4	
AIFTGYYGK	1	Unmodified	1018.5124	0.51238239	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	2	3	3	47.431	45.663	2	1.1164E-05	40177	160511_QHF_FH_JSI10i_2	111.01	70.904			1.1339	1.1408	32.242	10	2	Median	1.1468	0.95754	3.724	2	0	Median	0.95098	1.1416	4.1603	2	0	Median	1.1293	1.0657	55.596	3	1	Median	1.1451	1.1901	5.2872	3	1	Plateau	1027000000	541450000	485560000	144220000	54771000	89446000	195980000	106790000	89195000	390640000	232200000	158450000	296160000	147690000	148470000	2530	933	2383	15329;15330;15331;15332;15333;15334;15335;15336;15337;15338	20880;20881;20882;20883;20884;20885;20886;20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899;20900;20901	20896			22	
AIFTTGQGASAVGLTAYVQR	0	Unmodified	2010.0534	0.053439139	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.56	0.497		4	5							5	4			79.561	78.475	2;3	1.6932E-80	69276	160511_QHF_FH_JSI9i_2	200.55	182.41			0.98945	0.99799	19.95	6	1	Median	1.3485	1.2411	4.7343	3	1	Plateau	0.66674	0.86429	8.1672	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187450000	96272000	91181000	92546000	33602000	58944000	94906000	62669000	32237000	0	0	0	0	0	0	2531	1674	2384	15339;15340;15341;15342;15343;15344;15345;15346;15347	20902;20903;20904;20905;20906;20907;20908;20909;20910	20908			8	
AIGDHFYK	1	Unmodified	949.46577	0.46576654	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	3	4	3	26.533	24.551	2;3	0.00038386	20650	160511_QHF_FH_JSI11i_3	79.906	61.639			1.1091	1.1459	19.065	13	1	Median	1.1717	0.97214	19.311	3	1	Median	1.1091	1.2688	2.2876	3	0	Median	1.0242	0.98226	20.994	4	0	Median	1.0583	1.0642	17.455	3	0	Plateau	2342700000	1123000000	1219700000	140240000	60103000	80141000	387640000	220850000	166790000	740210000	332940000	407270000	1074600000	509100000	565480000	2532	279	2385	15348;15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360	20911;20912;20913;20914;20915;20916;20917;20918;20919;20920;20921;20922;20923;20924;20925;20926	20912			15	
AIGGIILTASHNPGGPNGDFGIK	1	Unmodified	2205.1542	0.15421582	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.69		2	13						5	7	7	4	2	76.723	73.947	2;3;4	1.2536E-59	63210	160511_QHF_FH_JSI10i_3	180.63	167.22			1.003	0.96029	20.277	19	4	Median	1.113	0.91485	20.451	7	2	Median	0.86181	0.99952	24.034	6	1	Median	0.89814	0.85089	8.8258	4	1	Linear	0.94047	0.97572	24.194	2	0	Median	5213000000	2640200000	2572900000	1507200000	752680000	754540000	1684200000	842120000	842130000	1724900000	899730000	825140000	296680000	145640000	151040000	2533	1460	2386	15361;15362;15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374;15375;15376;15377;15378;15379;15380	20927;20928;20929;20930;20931;20932;20933;20934;20935;20936;20937;20938;20939;20940;20941;20942;20943;20944;20945;20946;20947;20948;20949;20950;20951;20952;20953;20954;20955;20956;20957;20958;20959;20960;20961;20962;20963	20936			37	
AIGHLSK	1	Unmodified	724.42317	0.42317345	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	8.4421	8.09	2	0.015369	6242	160511_QHF_FH_JSI10i_3	64.757	29.865			0.82432	0.91557	28.828	8	0	Median	1.3921	1.1382	13.99	2	0	Median	0.61719	0.72636	25.405	2	0	Median	1.1247	1.1208	21.269	2	0	Median	0.66417	0.71248	21.159	2	0	Median	4189200000	2061800000	2127400000	797680000	348710000	448970000	973940000	524280000	449650000	1370800000	574750000	796050000	1046800000	614060000	432740000	2534	648	2387	15381;15382;15383;15384;15385;15386;15387;15388	20964;20965;20966;20967;20968;20969	20965			6	
AIGIEPSLATYHHIIR	0	Unmodified	1789.9839	0.98390301	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	62.689	61.788	3;4	1.488E-07	50923	160511_QHF_FH_JSI9i_3	92.265	80.825			1.0107	1.1409	46.734	7	2	Median	1.4242	1.1553	1.7761	2	1	Median	1.1082	1.2871	12.72	2	1	Median	0.60607	0.5723	72.058	2	0	Median	0.92953	0.94415	NaN	1	0	Median	516930000	232560000	284370000	122540000	50095000	72445000	131720000	62627000	69096000	161180000	78514000	82664000	101490000	41322000	60165000	2535	4064	2388	15389;15390;15391;15392;15393;15394;15395	20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980	20976			10	
AIGISNFNHLQVEMILNK	1	Unmodified	2040.0826	0.082630777	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.209	91.144	3	4.8167E-06	79039	160511_QHF_FH_JSI12i_3	93.226	79.394			0.52402	0.51663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52402	0.51663	NaN	1	1	Median	27150000	19243000	7907400	0	0	0	0	0	0	0	0	0	27150000	19243000	7907400	2536	1067	2389	15396	20981	20981			1	
AIGISNFNHLQVEMILNKPGLK	2	Oxidation (M)	2451.3308	0.33079997	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By matching	9.5	6.5			2						2	2		1	1	83.233	78.409	4	3.1419E-37	39431	160513_QHF_FH_JSI9Kac_6	161.8	144.21			1.0406	0.93282	6.2405	4	0	Median	1.0894	0.90849	4.858	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0045	0.92546	NaN	1	0	Median	0.932	1.0205	NaN	1	0	Median	352760000	151470000	201280000	270510000	109830000	160680000	0	0	0	69231000	33050000	36182000	13016000	8594100	4422400	2537	1067	2390	15397;15398;15399;15400	20982;20983	20983		713	2	
AIGISNFNHLQVEMILNKPGLK	2	Unmodified	2435.3359	0.33588535	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	2	4	2	2	88.343	86.024	3;4	1.2085E-18	42733	160513_QHF_FH_JSI10Kac_6	178.22	161.92			0.80655	0.84811	28.161	10	3	Median	1.155	0.95917	2.2861	2	0	Median	0.92758	1.0838	32.125	4	1	Median	0.72413	0.67158	22.109	2	1	Median	0.77284	0.81209	8.0368	2	1	Median	995950000	505160000	490800000	166920000	69439000	97479000	460310000	220020000	240290000	289950000	166530000	123420000	78776000	49169000	29607000	2538	1067	2390	15401;15402;15403;15404;15405;15406;15407;15408;15409;15410	20984;20985;20986;20987;20988;20989;20990;20991;20992;20993;20994;20995;20996;20997;20998;20999;21000;21001	21000			17	
AIGNTELENK	1	Unmodified	1087.551	0.55095274	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	22.334	20.32	2	5.0712E-05	17799	160511_QHF_FH_JSI12i_1	92.838	59.46			0.90268	1.0577	23.475	5	2	Median	1.5356	1.2659	NaN	1	1	Median	0.87905	1.0577	NaN	1	0	Median	0.78555	0.7765	17.247	2	1	Median	1.0789	1.089	NaN	1	0	Median	543030000	298080000	244950000	140210000	63850000	76363000	126120000	73815000	52302000	146500000	83535000	62967000	130200000	76881000	53322000	2539	1532	2391	15411;15412;15413;15414;15415	21002;21003;21004;21005;21006;21007	21004			5	
AIGNTFFDAGAAEFLTSK	1	Unmodified	1858.9101	0.91012895	3751	Q8WU10	PYROXD1	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	100.27	100.1	2	3.02E-07	86076	160511_QHF_FH_JSI12i_2	118.52	105.75			0.73819	0.77631	0.65887	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79409	0.7727	NaN	1	1	Median	0.68622	0.77993	NaN	1	1	Median	19405000	12797000	6607800	0	0	0	0	0	0	9594500	5589400	4005100	9810100	7207500	2602700	2540	3751	2392	15416;15417;15418;15419;15420	21008;21009;21010;21011;21012	21008			5	
AIGPHDVLATLLNNLK	1	Unmodified	1687.9621	0.96210494	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	3	2	3	99.944	97.688	2;3	4.8585E-117	88451	160511_QHF_FH_JSI12i_3	305.06	250.96			0.94611	0.92375	17.232	11	0	Median	1.2127	0.97162	12.721	3	0	Plateau	0.88229	1.0222	25.811	3	0	Median	0.86312	0.82547	11.935	2	0	Median	0.96268	1.0007	13.833	3	0	Median	5691100000	2873300000	2817800000	1070100000	441350000	628710000	1299400000	720770000	578650000	837220000	428380000	408840000	2484400000	1282800000	1201600000	2541	542	2393	15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431	21013;21014;21015;21016;21017;21018;21019;21020;21021;21022;21023;21024;21025;21026;21027;21028;21029	21028			17	
AIGSASEGAQSSLQEVYHK	1	Unmodified	1960.949	0.94903365	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.27	5	8	8				2	7	3	7	10	10	6	48.024	44.095	2;3	4.7841E-139	38703	160511_QHF_FH_JSI9i_2	292.13	274.89			0.93138	0.94217	28.266	29	3	Median	1.0612	0.84961	37.539	7	0	Median	0.81464	0.97395	25.262	8	2	Median	0.99381	0.94217	30.026	9	1	Median	0.85387	0.85822	14.531	5	0	Median	21064000000	10256000000	10808000000	2077600000	964150000	1113500000	4384500000	2108500000	2276000000	8049100000	3743200000	4305900000	6552900000	3440300000	3112500000	2542	1300	2394	15432;15433;15434;15435;15436;15437;15438;15439;15440;15441;15442;15443;15444;15445;15446;15447;15448;15449;15450;15451;15452;15453;15454;15455;15456;15457;15458;15459;15460;15461;15462;15463;15464	21030;21031;21032;21033;21034;21035;21036;21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047;21048;21049;21050;21051;21052;21053;21054;21055;21056;21057;21058;21059;21060;21061;21062;21063;21064;21065;21066;21067;21068;21069;21070;21071;21072;21073;21074;21075;21076;21077;21078;21079;21080;21081;21082;21083;21084;21085;21086;21087;21088;21089;21090;21091;21092;21093;21094;21095;21096;21097;21098	21065			68	
AIGSASEGAQSSLQEVYHKSMTLK	2	Acetyl (K)	2563.2588	0.25881682	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.122	69.808	3	4.6523E-130	38255	160513_QHF_FH_JSI11Kac_6	258.34	227.1			0.32608	0.31317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32608	0.31317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107580000	76670000	30906000	0	0	0	0	0	0	107580000	76670000	30906000	0	0	0	2543	1300	2395	15465	21099	21099	1237;1238		1	
AIGSLAVGHLTK	1	Unmodified	1165.6819	0.68190733	3332	Q86UW9	DTX2	Probable E3 ubiquitin-protein ligase DTX2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.283	43.231	3	0.00036597	36148	160511_QHF_FH_JSI10i_3	46.387	40.155			1.3767	1.1154	34.304	3	1	Median	1.3767	1.1154	NaN	1	0	Median	0.73656	0.85673	NaN	1	0	Median	1.8382	1.6917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115930000	57699000	58226000	44425000	22167000	22258000	42988000	22811000	20177000	28512000	12721000	15791000	0	0	0	2544	3332	2396	15466;15467;15468;15469	21100;21101;21102;21103	21101			4	
AIGSSPLGSGEGLLGLSPGPNGHSHLLK	1	Unmodified	2651.4031	0.40311329	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		77.549	77.549	3;4	6.3228E-11	69179	160511_QHF_FH_JSI11i_3	82.479	75.68			0.88982	0.8184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88982	0.8184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138010000	73680000	64332000	0	0	0	0	0	0	138010000	73680000	64332000	0	0	0	2545	3459	2397	15470;15471	21104;21105	21104			2	
AIGSTSKPQESPK	2	Unmodified	1328.6936	0.69359423	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	3	2	9.9217	9.7399	2;3	4.7012E-05	7090	160511_QHF_FH_JSI12i_3	86.772	58.805			0.79133	0.7768	52.064	8	3	Median	0.47176	0.39946	NaN	1	0	Median	0.45939	0.55395	105.03	2	1	Median	0.81368	0.76791	37.094	3	2	Median	0.8456	0.86543	13.651	2	0	Median	902830000	496970000	405870000	92091000	52051000	40040000	209200000	131090000	78113000	352400000	195830000	156570000	249140000	117990000	131150000	2546	1150	2398	15472;15473;15474;15475;15476;15477;15478;15479;15480;15481	21106;21107;21108;21109;21110;21111;21112;21113;21114;21115;21116	21114			10	
AIGTAYAVLSNPEK	1	Unmodified	1432.7562	0.75619449	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.47			5					1		2	1	2	1	58.182	55.685	2;3	1.2362E-14	49464	160511_QHF_FH_JSI11i_3	183.08	145.97			1.0057	0.98542	39.439	5	2	Median	0.98395	0.83282	NaN	1	1	Median	0.38319	0.41632	NaN	1	1	Median	1.1165	1.0403	7.664	2	0	Median	1.0057	1.01	NaN	1	0	Median	178020000	74210000	103810000	11781000	4623400	7157500	1033100	771470	261670	112650000	46828000	65817000	52557000	21987000	30570000	2547	5114	2399	15482;15483;15484;15485;15486;15487	21117;21118;21119;21120;21121;21122;21123	21118			7	
AIGTDEDLAHSSIR	0	Unmodified	1483.7267	0.72668527	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							2	2	4	4	35.318	34.514	2;3	2.0618E-10	29314	160511_QHF_FH_JSI12i_2	118.08	111.04			1.0208	1.124	9.0477	9	0	Median	1.4217	1.2262	8.5955	2	0	Median	0.84635	1.0389	7.321	2	0	Median	1.1066	1.097	14.797	2	0	Median	1.0208	1.124	3.1667	3	0	Median	1049600000	518190000	531450000	185380000	78305000	107080000	258170000	146670000	111500000	343140000	163550000	179590000	262940000	129660000	133280000	2548	5712	2400	15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499	21124;21125;21126;21127;21128;21129;21130;21131;21132;21133;21134;21135;21136;21137;21138	21128			15	
AIGTEPDSDVLSEIMHSFAK	1	Unmodified	2146.0252	0.025235058	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.64	101.57	3	4.6644E-139	87376	160511_QHF_FH_JSI12i_2	285.5	259.03			1.1242	1.1182	4.621	6	2	Median	1.2745	1.0571	NaN	1	1	Median	0.83196	1.0231	NaN	1	0	Median	1.1314	1.1352	1.4014	2	1	Median	1.084	1.1281	1.9878	2	0	Median	4547800000	2158500000	2389300000	632110000	255270000	376840000	942440000	536270000	406170000	1548600000	685020000	863590000	1424600000	681930000	742690000	2549	127	2401	15500;15501;15502;15503;15504;15505	21139;21140;21141;21142;21143;21144;21145;21146;21147;21148	21141			10	
AIGVGLGFELQR	0	Unmodified	1258.7034	0.70337105	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	75.374	75.09	2	0.0001056	65161	160511_QHF_FH_JSI12i_3	102.06	70.191			1.0361	1.0378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0361	1.0378	NaN	1	0	Median	52990000	26802000	26188000	0	0	0	0	0	0	0	0	0	52990000	26802000	26188000	2550	4959	2402	15506;15507;15508	21149;21150;21151;21152	21150			4	
AIGVKPPR	1	Unmodified	836.52322	0.52322184	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			16.361	15.328	2;3	0.0096286	12112	160511_QHF_FH_JSI9i_3	89.903	70.266			0.89874	0.86415	7.9673	2	0	Median	1.0125	0.81682	NaN	1	0	Median	0.79778	0.91424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	497210000	84633000	412580000	262600000	44106000	218490000	234620000	40527000	194090000	0	0	0	0	0	0	2551	1846	2403	15509;15510;15511;15512	21153;21154;21155;21156	21155			4	
AIGVLTSGGDAQGMNAAVR	0	Unmodified	1786.8996	0.89958103	2176;1129	P17858;Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.816	10	8	7							6	6	7	6	56.716	55.937	2;3	1.0763E-224	50723	160511_QHF_FH_JSI11i_1	383.06	353.52			0.8868	1.0882	12.355	25	6	Linear	1.3532	1.1343	14.973	6	3	Median	0.94561	1.1483	15.344	6	0	Median	1.0582	1.0478	7.8006	7	2	Median	0.92115	1.0507	9.8739	6	1	Linear	5860000000	2837600000	3022400000	987420000	378270000	609160000	1170100000	616680000	553450000	2349600000	1155500000	1194100000	1352800000	687160000	665670000	2552	1129;2176	2404	15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534;15535;15536;15537	21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167;21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197	21165			41	
AIGVLTSGGDAQGMNAAVR	0	Oxidation (M)	1802.8945	0.89449566	2176;1129	P17858;Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.47	5	5	1				1			2	3	2	5	45.473	43.643	2	4.3095E-16	39829	160511_QHF_FH_JSI12i_1	123.64	100.72			1.0018	1.108	29.52	9	6	Median	1.0018	0.84557	NaN	1	1	Median	0.99349	1.2184	41.608	3	2	Median	0.84308	0.84232	22.595	2	1	Median	1.2499	1.3296	13.115	3	2	Median	227240000	112190000	115060000	22211000	9415600	12796000	86361000	47167000	39194000	31850000	16725000	15125000	86821000	38879000	47942000	2553	1129;2176	2404	15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549	21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210	21202		752	13	
AIGYLIPLMDAEYANYYTR	0	Unmodified	2236.0874	0.087441384	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.991	86.599	3	2.1206E-13	46663	160513_QHF_FH_JSI12Kac_6	127.88	123.93			1.2064	1.2394	45.531	4	3	Median	1.7722	1.5554	NaN	1	1	Median	0.47474	0.55944	NaN	1	1	Median	1.405	1.364	NaN	1	1	Median	1.0358	1.1263	NaN	1	0	Median	169840000	80259000	89585000	28374000	8942600	19431000	35438000	25363000	10075000	45497000	18418000	27078000	60535000	27535000	33000000	2554	542	2405	15550;15551;15552;15553	21211;21212;21213;21214	21213			4	
AIGYYSATSK	1	Unmodified	1059.5237	0.52367535	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		34.239	24.478	2	0.054707	14540	160513_QHF_FH_JSI11Kac_5	41.448	14.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2555	5147	2406	15554	21215	21215			1	
AIHDLGK	1	Unmodified	752.41809	0.41808807	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.3061	9.4036	2	0.049097	6804	160511_QHF_FH_JSI12i_3	47.849	21.74			0.99724	1.0258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99724	1.0258	NaN	1	1	Median	273250000	133220000	140030000	0	0	0	0	0	0	0	0	0	273250000	133220000	140030000	2556	4448	2407	15555	21216	21216			1	
AIHDVKATDLGLGK	2	Acetyl (K)	1478.8093	0.80929269	3134	Q6PML9	SLC30A9	Zinc transporter 9	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		60.473	49.577	3	0.0016425	27097	160513_QHF_FH_JSI11Kac_5	66.285	44.728			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1334100	1334100	0	0	0	0	0	0	0	1334100	1334100	0	0	0	0	2557	3134	2408	15556	21217	21217	2778		1	
AIHHFIEGVK	1	Unmodified	1149.6295	0.62947783	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	25.563	25.532	3	0.0027865	21271	160511_QHF_FH_JSI12i_3	49.3	39.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2558	941	2409	15557	21218	21218			1	
AIHKEGCVEK	2	Acetyl (K)	1211.5969	0.59685707	918	P08962	CD63	CD63 antigen	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1		1	3	1	19.258	9.9304	2;3	6.8728E-07	7840	160513_QHF_FH_JSI11Kac_5	121.02	81.103			0.59337	0.64648	164.61	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7353	2.0704	NaN	1	0	Median	0.2029	0.20186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29209000	22735000	6473900	0	0	0	3723000	1468700	2254300	24431000	20211000	4219600	1055400	1055400	0	2559	918	2410	15558;15559;15560;15561;15562	21219;21220;21221;21222;21223;21224	21220	677		6	
AIHPGAGYEGISEYK	1	Unmodified	1590.7678	0.7678218	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	38.737	38.557	2	0.00041043	32853	160511_QHF_FH_JSI12i_3	92.866	70.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24476000	12321000	12155000	0	0	0	0	0	0	0	0	0	24476000	12321000	12155000	2560	4765	2411	15563;15564	21225;21226	21225			2	
AIHQQILLLR	0	Unmodified	1203.7452	0.74517629	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	59.171	49.903	2;3	2.0633E-08	27348	160513_QHF_FH_JSI10Kac_6	117.53	96.062			1.0712	0.99211	7.7558	5	2	Median	1.1168	0.97599	2.3167	2	1	Median	0.86212	1.0186	NaN	1	1	Median	1.2196	1.1686	NaN	1	0	Median	0.97033	0.98587	NaN	1	0	Median	169050000	81483000	87571000	30509000	14487000	16023000	88998000	44653000	44346000	29808000	12302000	17505000	19739000	10042000	9697200	2561	413	2412	15565;15566;15567;15568;15569;15570	21227;21228;21229;21230;21231	21230			4	
AIHSWLTR	0	Unmodified	982.53485	0.53484916	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			41.326	32.463	2;3	8.1745E-05	17992	160513_QHF_FH_JSI10Kac_6	112.84	80.907			0.83551	0.82058	18.83	2	1	Median	0.86158	0.71828	NaN	1	1	Median	0.81022	0.93745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60969000	30757000	30211000	5223300	2935800	2287400	55745000	27822000	27924000	0	0	0	0	0	0	2562	1301	2413	15571;15572	21232;21233	21233			2	
AIHTAPVATMAFDPTSTLLATGGCDGAVR	0	Unmodified	2900.4161	0.41606252	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	90.269	90.084	3	1.4407E-08	80374	160511_QHF_FH_JSI11i_3	57.688	50.735			1.6335	1.4877	29.631	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67994	0.8436	NaN	1	1	Median	1.6335	1.4877	NaN	1	0	Median	1.2289	1.2995	NaN	1	0	Median	68368000	32389000	35979000	0	0	0	14308000	10112000	4195700	32670000	14946000	17724000	21391000	7331000	14060000	2563	2304	2414	15573;15574;15575	21234;21235;21236;21237;21238;21239;21240	21234			7	
AIHVLDVEQGQLER	0	Unmodified	1605.8475	0.84746911	4758	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	52.973	52.567	2;3	3.2645E-15	45116	160511_QHF_FH_JSI12i_3	123.28	115.87			0.95735	0.97795	8.7003	6	2	Median	1.2549	1.0692	NaN	1	1	Median	0.78575	0.95185	NaN	1	1	Median	0.98342	0.93225	10.593	2	0	Median	0.92485	0.94547	11.302	2	0	Median	299070000	154530000	144540000	21539000	10105000	11434000	42142000	20474000	21668000	126200000	63325000	62879000	109180000	60623000	48560000	2564	4758	2415	15576;15577;15578;15579;15580;15581	21241;21242;21243;21244;21245;21246;21247;21248;21249;21250	21248			10	
AIHWAAYMGHIEVVK	1	Unmodified	1723.8868	0.8868315	243	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	yes	yes	0	0	0	0	By MS/MS	By matching			16	0									2	1	1			73.508	65.529	4	0.00053413	34956	160513_QHF_FH_JSI9Kac_6	60.474	50.135			0.93155	0.93354	1.6844	2	0	Median	1.1064	0.94473	NaN	1	0	Median	0.7843	0.92249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169770000	83633000	86135000	50794000	24742000	26051000	118970000	58890000	60083000	0	0	0	0	0	0	2565	243	2416	15582;15583	21251	21251			1	
AIIAPHAGYTYCGSCAAHAYK	1	Unmodified	2281.0408	0.040842317	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.922	40.922	4	6.0462E-05	36088	160511_QHF_FH_JSI11i_3	60.564	55.76			0.77151	0.72119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77151	0.72119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53760000	32392000	21367000	0	0	0	0	0	0	53760000	32392000	21367000	0	0	0	2566	5556	2417	15584	21252;21253	21252			2	
AIIASNIMYIVGQYPR	0	Oxidation (M)	1823.9604	0.96039038	231	O14980	XPO1	Exportin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	2	4	3	4	83.218	75.228	2;3	1.2929E-123	40644	160513_QHF_FH_JSI9Kac_6	273.44	226.83			0.94205	0.97846	14.839	12	1	Median	1.151	0.97916	5.9327	2	0	Median	0.80942	0.95219	13.178	4	1	Linear	1.0346	0.98707	16.188	3	0	Median	0.80592	0.86739	9.0179	3	0	Median	1147300000	596800000	550470000	202620000	87930000	114690000	561710000	290550000	271160000	190720000	87559000	103160000	192220000	130760000	61455000	2567	231	2418	15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597	21254;21255;21256;21257;21258;21259;21260;21261;21262;21263;21264;21265;21266	21257		98	11	
AIIASNIMYIVGQYPR	0	Unmodified	1807.9655	0.96547575	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	90.468	82.158	2;3	2.9212E-139	45455	160513_QHF_FH_JSI9Kac_6	330.14	297.62			1.066	1.0249	4.0742	8	0	Median	1.1826	1.0047	0.84218	2	0	Median	0.86287	1.0254	0.88117	2	0	Median	1.1611	1.093	0.086007	2	0	Median	0.95705	1.0019	4.0217	2	0	Median	9964000000	5163800000	4800200000	1604300000	759160000	845110000	3982200000	2228500000	1753600000	2568000000	1263700000	1304400000	1809500000	912410000	897120000	2568	231	2418	15598;15599;15600;15601;15602;15603;15604;15605	21267;21268;21269;21270;21271;21272;21273;21274;21275;21276;21277;21278;21279;21280;21281	21273			15	
AIIDEFEQK	1	Unmodified	1091.5499	0.5498901	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	50.398	49.263	2	0.00095536	43598	160511_QHF_FH_JSI10i_2	82.75	59.322			1.0525	1.0596	11.039	3	1	Plateau	1.1433	0.96438	NaN	1	0	Median	0.77847	0.95898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0525	1.1642	NaN	1	0	Median	256100000	143820000	112280000	72274000	32632000	39642000	82234000	49372000	32862000	0	0	0	101590000	61820000	39774000	2569	2605	2419	15606;15607;15608;15609	21282;21283;21284;21285	21285			4	
AIIDHFGQR	0	Unmodified	1055.5512	0.55122751	1276	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			29.494	28.133	2;3	0.00072971	22843	160511_QHF_FH_JSI9i_3	75.213	61.217			1.8056	1.8097	49.284	2	1	Median	3.1048	2.5642	NaN	1	0	Median	1.0501	1.2772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126420000	60160000	66258000	45468000	14726000	30742000	80950000	45434000	35516000	0	0	0	0	0	0	2570	1276	2420	15610;15611	21286;21287	21287			2	
AIIEEGDK	1	Unmodified	873.44436	0.4443624	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		16.425	15.947	2	0.021359	13487	160511_QHF_FH_JSI10i_1	44.961	19.134			0.57699	0.51288	22.558	3	0	Median	0.57699	0.47789	NaN	1	0	Median	0.60289	0.72823	NaN	1	0	Median	0.54599	0.51288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	241100000	147580000	93518000	94492000	55686000	38806000	79716000	47103000	32612000	66894000	44795000	22099000	0	0	0	2571	486	2421	15612;15613;15614	21288	21288			1	
AIIEEYLHLNDMK	1	Oxidation (M)	1603.7916	0.79159371	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	68.373	68.175	2;3	5.9661E-05	59064	160511_QHF_FH_JSI12i_3	79.614	68.884			0.97567	0.99565	41.777	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97996	0.89126	NaN	1	0	Median	0.67122	0.67662	54.63	2	1	Median	242230000	126360000	115870000	0	0	0	0	0	0	39426000	17429000	21996000	202810000	108930000	93878000	2572	2217	2422	15615;15616;15617	21289;21290;21291;21292	21291		1842	4	
AIIEEYLHLNDMK	1	Unmodified	1587.7967	0.79667909	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.43		9	5						1	3	3	5	4	77.303	76.197	2;3	7.4509E-16	67407	160511_QHF_FH_JSI11i_2	138.87	121.07			1.0543	1.0585	31.07	15	6	Median	1.2418	1.0518	52.517	3	2	Plateau	0.88174	1.0582	22.656	3	2	Median	1.0543	0.99664	16.922	5	2	Median	0.9982	1.1761	9.5365	4	0	Linear	1490100000	649940000	840190000	176930000	71235000	105700000	217780000	99474000	118300000	535470000	227260000	308210000	559950000	251970000	307980000	2573	2217	2422	15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632	21293;21294;21295;21296;21297;21298;21299;21300;21301;21302;21303;21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318;21319;21320;21321;21322;21323;21324	21310			32	
AIIENLIQK	1	Unmodified	1040.623	0.62299547	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		60.154	59.568	2	0.0001549	52948	160511_QHF_FH_JSI11i_3	88.921	33.39			1.0149	1.0276	9.1788	4	0	Median	1.0877	0.9714	NaN	1	0	Median	0.91244	1.1108	NaN	1	0	Median	1.0149	0.99787	12.114	2	0	Median	NaN	NaN	NaN	0	0	Median	199720000	101310000	98412000	36478000	17459000	19020000	37643000	18056000	19587000	125600000	65798000	59805000	0	0	0	2574	594	2423	15633;15634;15635;15636	21325;21326;21327;21328	21325			4	
AIIGLGFAFIQHPSLMFEQEVK	1	Unmodified	2474.3032	0.30318824	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	96.174	86.92	3	4.3738E-74	49431	160513_QHF_FH_JSI9Kac_6	212.79	162.82			1.1606	1.1043	27.467	2	0	Median	1.0802	0.90935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2469	1.341	NaN	1	0	Median	231850000	109610000	122240000	139740000	71620000	68116000	0	0	0	0	0	0	92116000	37988000	54127000	2575	3063	2424	15637;15638	21329;21330	21329			2	
AIIHVSLATTLGDMK	1	Unmodified	1568.8596	0.8596137	4106	Q96HA7	TONSL	Tonsoku-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.848	75.564	3	0.032911	65638	160511_QHF_FH_JSI12i_3	32.523	27.229			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11890000	11890000	0	0	0	0	0	0	0	0	0	0	11890000	11890000	0	2576	4106	2425	15639	21331	21331			1	
AIIIFVPVPQLK	1	Unmodified	1336.8482	0.84824438	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	5.94	1	11	10	4	4	4	4	3	12	9	13	17	14	97.765	92.77	2;3	1.048E-10	40728	160513_QHF_FH_JSI12Kac_3	128.1	116.25			0.97397	0.97769	15.325	36	36	Median	1.1333	1.0182	9.5052	6	6	Median	0.83187	0.93632	17.746	8	8	Linear	0.93827	0.91032	13.66	12	12	Median	0.88527	0.97134	12.653	10	10	Median	92734000000	47961000000	44774000000	19889000000	9042900000	10846000000	25834000000	13678000000	12156000000	30349000000	16166000000	14182000000	16663000000	9073600000	7589800000	2577	1979	2426	15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687;15688;15689;15690;15691;15692	21332;21333;21334;21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348;21349;21350;21351;21352;21353;21354;21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371;21372;21373;21374;21375;21376;21377;21378;21379;21380;21381;21382;21383;21384;21385;21386;21387	21362			56	
AIIKPQYVDQIPK	2	Unmodified	1511.8712	0.87116466	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	2	2	53.88	52.897	2;3	2.2313E-09	45246	160511_QHF_FH_JSI12i_3	115.18	60.567			0.73548	0.79669	10.295	5	5	Median	1.0334	0.83991	NaN	1	1	Median	0.68702	0.79149	0.92603	2	2	Median	0.73548	0.68839	NaN	1	1	Median	0.86882	0.91193	NaN	1	1	Median	1186000000	587240000	598790000	38307000	16415000	21891000	273230000	145170000	128070000	330400000	161220000	169180000	544090000	264440000	279650000	2578	1945	2427	15693;15694;15695;15696;15697;15698;15699;15700;15701;15702	21388;21389;21390;21391;21392;21393;21394;21395;21396;21397	21397			10	
AIIKPVIVDK	2	Unmodified	1094.7063	0.70633117	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.178	41.955	3	0.026266	35838	160511_QHF_FH_JSI12i_3	36.952	25.086			0.49173	0.49479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49173	0.49479	NaN	1	1	Median	52110000	32232000	19878000	0	0	0	0	0	0	0	0	0	52110000	32232000	19878000	2579	3336	2428	15703	21398	21398			1	
AIILAAAPGEK	1	Unmodified	1052.623	0.62299547	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.61	4	4	3				1	1		3	3	4	3	48.761	46.082	2	4.5008E-05	39432	160511_QHF_FH_JSI11i_2	96.331	88.111			1.2189	1.0339	23.381	11	5	Median	1.3881	1.1705	17.549	2	1	Median	0.77331	0.92964	0.53317	2	0	Median	1.2359	1.1911	25.288	4	3	Median	1.2299	1.3262	31.97	3	1	Median	489520000	237060000	252470000	65114000	27798000	37316000	128160000	68721000	59440000	161950000	77012000	84936000	134300000	63525000	70776000	2580	1273	2429	15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716	21399;21400;21401;21402;21403;21404;21405;21406;21407;21408;21409;21410;21411;21412;21413	21410			14	
AIILFNPDAK	1	Unmodified	1100.623	0.62299547	1310	P28702	RXRB	Retinoic acid receptor RXR-beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.327	67.028	2	0.050506	57676	160511_QHF_FH_JSI12i_2	59.35	15.001			1.5944	1.6818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5944	1.6818	NaN	1	0	Median	23681000	10242000	13438000	0	0	0	0	0	0	0	0	0	23681000	10242000	13438000	2581	1310	2430	15717	21414	21414			0	
AIILNTPHNPLGK	1	Unmodified	1386.7983	0.79833407	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	55.166	54.303	2;3	7.5692E-54	47916	160511_QHF_FH_JSI11i_3	193.73	181.46			1.003	0.99689	7.233	10	0	Median	1.2055	0.99598	8.2966	3	0	Median	0.76685	0.88868	11.039	3	0	Plateau	1.0134	0.97343	6.5994	2	0	Median	1.003	1.0106	0.046269	2	0	Median	2209800000	1120600000	1089200000	463330000	211390000	251940000	423190000	229950000	193240000	526850000	263500000	263350000	796450000	415810000	380650000	2582	3176	2431	15718;15719;15720;15721;15722;15723;15724;15725;15726;15727	21415;21416;21417;21418;21419;21420;21421;21422;21423;21424;21425;21426;21427;21428;21429;21430;21431;21432;21433;21434;21435;21436;21437	21415			23	
AIIMQLGTLLTFFHELVQTALPSGSCVDTLLK	1	Unmodified	3515.8772	0.8771846	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.17	99.45	4	0.0061035	58895	160513_QHF_FH_JSI10Kac_6	35.923	25.953			1.1093	1.3233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1093	1.3233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73292000	32455000	40838000	0	0	0	73292000	32455000	40838000	0	0	0	0	0	0	2583	5034	2432	15728	21438	21438			0	
AIINDMAFMWHR	0	Oxidation (M)	1519.7064	0.7064243	5802				yes	yes	0	0	1	0			By MS/MS		1	0	1											1		60.282	59.849	2	0.011889	54427	160511_QHF_FH_JSI11i_1	50.607	32.295	+		0.95461	0.9322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95461	0.9322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1313400000	604720000	708710000	0	0	0	0	0	0	1313400000	604720000	708710000	0	0	0	2584	5802	2433	15729	21439	21439		2750;2751	1	
AIIRENEFSFEDNAIR	0	Unmodified	1922.9486	0.94863972	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			65.342	63.845	3	0.00010433	52366	160511_QHF_FH_JSI9i_3	84.14	68.985			1.1459	1.1353	28.371	2	1	Median	1.6578	1.3876	NaN	1	1	Median	0.79211	0.92897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91906000	43122000	48784000	34888000	13801000	21087000	57018000	29321000	27697000	0	0	0	0	0	0	2585	2578	2434	15730;15731	21440;21441;21442	21442			3	
AIISELVSISELAQPLESGTHFPLFLLCLQQLAK	1	Unmodified	3765.0427	0.042670028	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.88	96.156	4	1.092E-87	56820	160513_QHF_FH_JSI10Kac_6	195.73	174.56			0.83141	0.95551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83141	0.95551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187410000	98140000	89272000	0	0	0	187410000	98140000	89272000	0	0	0	0	0	0	2586	2084	2435	15732	21443;21444	21444			2	
AIISLLSK	1	Unmodified	843.54295	0.54295423	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.134	62.311	2	0.0003612	52254	160511_QHF_FH_JSI10i_3	110.81	50.02			1.0228	1.0554	7.0957	4	0	Median	1.4503	1.16	NaN	1	0	Median	0.92909	1.0598	NaN	1	0	Median	1.1005	1.0511	NaN	1	0	Median	0.95046	0.97544	NaN	1	0	Median	829610000	410230000	419380000	209970000	111630000	98335000	149250000	73043000	76202000	185000000	93219000	91777000	285400000	132340000	153060000	2587	1841	2436	15733;15734;15735;15736	21445;21446;21447;21448;21449;21450	21447			6	
AIISSSDDSSDEDK	1	Unmodified	1467.6213	0.62127673	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	18.338	17.869	2	2.0433E-13	15445	160511_QHF_FH_JSI10i_1	128.01	116.17			1.7209	1.7483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7209	1.7483	NaN	1	1	Median	18320000	4746600	13573000	0	0	0	0	0	0	0	0	0	18320000	4746600	13573000	2588	3115	2437	15737;15738	21451;21452	21452			2	
AIITALGVER	0	Unmodified	1041.6182	0.61824444	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	54.986	54.137	2	6.2596E-05	48030	160511_QHF_FH_JSI11i_3	99.688	42.407			0.93335	0.96708	16.113	6	0	Median	1.1137	0.9569	NaN	1	0	Median	0.83523	0.99665	11.824	2	0	Median	1.1121	1.0513	NaN	1	0	Median	0.77851	0.8218	24.518	2	0	Median	823870000	429310000	394560000	86427000	41972000	44455000	168250000	89087000	79158000	267560000	132560000	135000000	301640000	165690000	135950000	2589	3860	2438	15739;15740;15741;15742;15743;15744;15745	21453;21454;21455;21456;21457;21458	21454			4	
AIITDSVK	1	Unmodified	845.48583	0.48583328	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.3	5.71	3	4					3			1	3	3	3	27.513	26.846	2	0.0033437	24035	160511_QHF_FH_JSI12i_1	73.26	23.902			0.94875	1.0193	10.16	7	0	Median	1.2437	1.0792	NaN	1	0	Median	0.75366	0.91377	3.2047	2	0	Median	1.0334	1.0372	2.4517	2	0	Median	0.86795	0.92762	17.023	2	0	Median	771490000	426330000	345160000	78505000	33872000	44633000	265440000	166690000	98746000	240690000	118010000	122680000	186860000	107760000	79100000	2590	4193	2439	15746;15747;15748;15749;15750;15751;15752;15753;15754;15755	21459;21460;21461;21462;21463;21464;21465;21466;21467	21461			9	
AIIVIQNYYHAYK	1	Unmodified	1594.8508	0.85076357	3486	Q8IZT6	ASPM	Abnormal spindle-like microcephaly-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	71.672	62.903	3	1.358E-17	34615	160513_QHF_FH_JSI10Kac_6	143.79	123.95			1.0582	1.0451	23.947	5	2	Median	1.2546	1.0587	24.267	2	2	Median	0.99661	1.1928	NaN	1	0	Median	1.1084	1.0451	NaN	1	0	Median	0.66632	0.69622	NaN	1	0	Median	226260000	114590000	111670000	63230000	29224000	34007000	65764000	36179000	29585000	63899000	30882000	33017000	33366000	18307000	15058000	2591	3486	2440	15756;15757;15758;15759;15760	21468;21469;21470;21471;21472;21473;21474	21474			6	
AIIYQYMEEIYHR	0	Unmodified	1727.8341	0.83412723	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	81.767	81.061	3	2.7114E-05	70309	160511_QHF_FH_JSI12i_3	89.629	82.428			0.83401	0.66916	31.899	4	0	Linear	1.5777	1.3154	NaN	1	0	Median	0.96036	1.0754	NaN	1	0	Median	0.72428	0.68085	NaN	1	0	Median	0.66702	0.71601	NaN	1	0	Median	141230000	77668000	63557000	12755000	4367600	8387500	21758000	11529000	10229000	59046000	33220000	25826000	47667000	28552000	19115000	2592	1469	2441	15761;15762;15763;15764	21475;21476;21477	21477			3	
AIKAWNNPSPR	1	Acetyl (K)	1294.6782	0.67821894	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.837	39.135	2	0.0055383	21328	160513_QHF_FH_JSI11Kac_6	70.028	50.757			0.35305	0.35418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35305	0.35418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2556700	2237300	319440	0	0	0	0	0	0	2556700	2237300	319440	0	0	0	2593	5639	2442	15765	21478	21478	3509		1	
AIKSPPGFSAK	2	Unmodified	1101.6182	0.61824444	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				27.019	25.664	3	0.013373	20748	160511_QHF_FH_JSI9i_3	45.357	34.747			0.08206	0.065695	NaN	1	1	Median	0.08206	0.065695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48349000	43231000	5118100	48349000	43231000	5118100	0	0	0	0	0	0	0	0	0	2594	727	2443	15766	21479	21479			1	
AILDAEPGPRPALQPSPSIR	0	Unmodified	2084.1378	0.13783747	4516	Q9BXI6	TBC1D10A	TBC1 domain family member 10A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				60.535	59.011	3	0.0014327	48440	160511_QHF_FH_JSI9i_3	49.224	43.101			1.8719	1.6005	NaN	1	1	Median	1.8719	1.6005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7671900	2127900	5544100	7671900	2127900	5544100	0	0	0	0	0	0	0	0	0	2595	4516	2444	15767	21480;21481	21480			2	
AILEQNFR	0	Unmodified	989.52943	0.52942943	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	37.246	36.759	2	0.00021788	32143	160511_QHF_FH_JSI11i_3	119.07	72.702			1.0462	1.0689	28.137	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0192	1.0002	34.366	2	1	Median	1.0592	1.1269	32.431	2	1	Median	477600000	224480000	253120000	0	0	0	0	0	0	231820000	118930000	112890000	245780000	105550000	140230000	2596	2494	2445	15768;15769;15770;15771;15772;15773	21482;21483;21484;21485;21486;21487;21488;21489	21483			8	
AILESLFSQYSGK	1	Unmodified	1441.7453	0.74529545	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	86.728	86.106	2	2.2394E-09	76933	160511_QHF_FH_JSI11i_3	107.06	80.937			0.97668	1.4171	18.635	4	2	Linear	1.6175	1.3828	NaN	1	1	Median	1.2557	1.4522	NaN	1	0	Median	1.5702	1.4951	NaN	1	1	Median	0.96048	0.99937	NaN	1	0	Median	80651000	32738000	47913000	8130700	3541300	4589400	13191000	5119300	8071600	19066000	6213700	12853000	40263000	17863000	22399000	2597	302	2446	15774;15775;15776;15777;15778	21490;21491;21492;21493;21494;21495;21496	21491			7	
AILESSPIMEAFGNAK	1	Unmodified	1676.8444	0.84435757	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	88.084	87.974	2;3	4.2195E-05	76354	160511_QHF_FH_JSI12i_3	108.37	83.518			1.663	1.7416	15.133	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.663	1.7416	15.133	2	2	Median	35914000	16574000	19339000	0	0	0	0	0	0	0	0	0	35914000	16574000	19339000	2598	4876	2447	15779;15780	21497;21498	21497			2	
AILEVLQS	0	Unmodified	871.50148	0.50148335	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	2	4	74.534	70.054	2	0.00095556	28745	160513_QHF_FH_JSI10Kac_2	92.692	75.766			1.0027	1.0334	21.494	8	1	Median	1.2521	1.0236	NaN	1	0	Median	0.85348	1.0101	11.19	3	1	Plateau	1.3937	1.3384	31.441	2	0	Median	1.0027	1.0505	0.96918	2	0	Median	355850000	183700000	172150000	74049000	35777000	38272000	113070000	58102000	54966000	89646000	45406000	44239000	79089000	44419000	34670000	2599	2817	2448	15781;15782;15783;15784;15785;15786;15787;15788;15789;15790	21499;21500;21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512	21505			14	
AILFAVVAR	0	Unmodified	958.59639	0.59638679	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	77.006	68.603	2	0.00061868	38055	160513_QHF_FH_JSI10Kac_6	91.041	66.838			1.0265	0.986	11.263	4	0	Median	1.1314	0.97979	NaN	1	0	Median	0.72701	0.87293	NaN	1	0	Median	1.1965	1.1489	NaN	1	0	Median	0.93128	0.99226	NaN	1	0	Median	313500000	160010000	153490000	47232000	23604000	23628000	142870000	75405000	67468000	83159000	40662000	42497000	40232000	20334000	19898000	2600	1754	2449	15791;15792;15793;15794	21513;21514;21515;21516;21517	21517			5	
AILFLPMSAK	1	Unmodified	1089.6256	0.62563801	921	P09038	FGF2	Fibroblast growth factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	84.17	83.704	2	0.0013132	74601	160511_QHF_FH_JSI11i_3	69.423	44.501			0.94392	1.1476	20.049	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94392	1.1476	NaN	1	0	Median	0.88894	0.83875	NaN	1	0	Median	1.1591	1.2182	NaN	1	0	Median	37201000	17949000	19252000	0	0	0	7119500	3810500	3309000	11912000	7051800	4860000	18169000	7086400	11083000	2601	921	2450	15795;15796;15797	21518;21519;21520;21521	21518			4	
AILGSVER	0	Unmodified	843.48142	0.48141661	1282;13	P26639;A2RTX5	TARS;TARSL2	Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.6	2	7	3					4	4	4	6	5	5	30.532	26.405	1;2	0.00010847	14841	160513_QHF_FH_JSI9Kac_5	124.59	24.675			0.91047	0.99909	10.246	20	0	Median	1.2697	1.0906	2.2574	4	0	Median	0.78947	0.96107	7.0941	6	0	Median	0.94371	0.92929	10.5	5	0	Median	0.88115	0.92466	11.992	5	0	Median	8129100000	4106800000	4022300000	840270000	350660000	489610000	2127000000	1055100000	1071900000	2731300000	1361900000	1369400000	2430600000	1339200000	1091400000	2602	1282;13	2451	15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817	21522;21523;21524;21525;21526;21527;21528;21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542;21543;21544	21528			21	
AILIFNNHGK	1	Unmodified	1125.6295	0.62947783	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	2	3	44.955	40.964	2;3	1.193E-09	22033	160513_QHF_FH_JSI9Kac_6	122.13	86.624			0.95014	1.0018	17.046	11	2	Median	0.99047	0.79492	28.499	3	1	Median	0.85077	0.95684	7.714	3	1	Plateau	1.0279	0.98049	17.285	2	0	Median	0.95572	1.0018	5.2681	3	0	Median	1059100000	519920000	539190000	329350000	149500000	179840000	230340000	119440000	110910000	227360000	114000000	113360000	272060000	136980000	135080000	2603	3846	2452	15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828	21545;21546;21547;21548;21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559	21554			15	
AILIFNNHGKPR	1	Unmodified	1378.7834	0.78335271	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			43.207	34.59	4	1.0076E-09	19188	160513_QHF_FH_JSI10Kac_6	118.4	102.86			0.97435	1.1681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97435	1.1681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19894000	10690000	9203100	0	0	0	19894000	10690000	9203100	0	0	0	0	0	0	2604	3846	2453	15829	21560;21561	21561			2	
AILILDNDGDR	0	Unmodified	1213.6303	0.63026569	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.33	0.471	2	1								1		1	1	57.055	56.517	2	0.0067031	51380	160511_QHF_FH_JSI12i_1	61.65	35.711			1.0381	1.0233	30.933	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87545	0.82222	NaN	1	1	Median	1.2309	1.2734	NaN	1	1	Median	90933000	61128000	29804000	0	0	0	0	0	0	49538000	33129000	16409000	41394000	27999000	13395000	2605	1966	2454	15830;15831;15832	21562;21563;21564	21563			3	
AILILDNDGDRLFAK	1	Unmodified	1672.9148	0.91482039	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	3	3	2	81.307	80.607	2;3	6.4948E-39	71854	160511_QHF_FH_JSI11i_3	206.58	206.58			0.9203	0.9255	12.853	11	0	Median	1.2612	1.0515	1.3824	3	0	Median	0.82519	0.96402	7.6978	3	0	Median	0.96569	0.9255	3.8912	3	0	Plateau	0.74981	0.76139	12.793	2	0	Median	1561400000	779410000	781970000	199090000	81422000	117670000	314490000	161580000	152900000	775850000	389540000	386320000	271950000	146870000	125080000	2606	1966	2455	15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843	21565;21566;21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595	21570			31	
AILLAILPMSLLSVGK	1	Unmodified	1638.0154	0.01538606	4474	Q9BVK2	ALG8	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6		5	4	3	101.98	97.533	2;3	1.2267E-54	52279	160513_QHF_FH_JSI11Kac_6	192.05	156.09			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2607	4474	2456	15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855	21596;21597;21598;21599;21600;21601;21602;21603;21604;21605;21606;21607	21601			12	
AILLPDLSEPNNEPLFSPASEVPRK	1	Unmodified	2732.4385	0.43849575	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	97.855	97.755	3;4	3.5598E-09	86961	160511_QHF_FH_JSI11i_3	76.733	73.932			0.80039	0.90121	15.149	5	1	Median	0.80039	0.66179	NaN	1	0	Median	0.75354	0.90584	0.72598	2	0	Median	0.99687	0.92962	7.4796	2	1	Median	NaN	NaN	NaN	0	0	Median	131150000	71337000	59811000	25663000	15564000	10100000	41966000	27085000	14881000	63518000	28688000	34830000	0	0	0	2608	3819	2457	15856;15857;15858;15859;15860;15861	21608;21609;21610;21611;21612;21613;21614;21615;21616;21617;21618;21619	21608			12	
AILLYLLQGR	0	Unmodified	1158.7125	0.71247918	3347	Q86VV8	RTTN	Rotatin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.142	82.424	2	0.022283	46568	160513_QHF_FH_JSI10Kac_6	65.252	48.476			0.74304	0.88185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74304	0.88185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33727000	17822000	15905000	0	0	0	33727000	17822000	15905000	0	0	0	0	0	0	2609	3347	2458	15862	21620	21620			0	
AILNGIDSINK	1	Unmodified	1156.6452	0.64518747	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	2	4								1		3	2	53.417	52.542	2	3.5561E-06	45376	160511_QHF_FH_JSI11i_2	109.66	47.701			0.76671	0.83214	57.982	4	3	Median	0.71963	0.62141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3746	2.326	NaN	1	0	Median	0.76671	0.83214	4.5783	2	2	Median	326830000	173720000	153100000	97218000	51778000	45441000	0	0	0	42050000	14049000	28002000	187560000	107900000	79661000	2610	5479	2459	15863;15864;15865;15866;15867;15868	21621;21622;21623;21624;21625;21626	21625			6	
AILPCIK	1	Unmodified	813.47825	0.47824549	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.36	3	3	3					4	1	1	4	4	5	52.368	48.158	2	0.0091535	41134	160511_QHF_FH_JSI12i_2	80.377	0			0.95658	1.038	18.078	14	0	Median	1.2489	1.0381	NaN	1	0	Median	0.8785	1.0408	4.5819	4	0	Median	0.88204	0.88726	7.3618	4	0	Median	1.1417	1.2358	17.414	5	0	Median	4416500000	2308400000	2108100000	3065800	1379700	1686100	1092400000	619620000	472810000	1933800000	1064700000	869080000	1387200000	622720000	764520000	2611	1917	2460	15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881;15882	21627;21628;21629;21630;21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645	21632			19	
AILPCQDTPSVK	1	Unmodified	1327.6806	0.6805867	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	46.461	43.757	2	1.366E-05	39350	160511_QHF_FH_JSI10i_1	127.3	114.35			0.79894	0.78925	45.153	5	4	Median	0.3663	0.30246	NaN	1	1	Median	0.5447	0.63236	NaN	1	1	Median	0.83123	0.82703	6.6121	2	1	Median	0.88764	0.9045	NaN	1	1	Median	647890000	366190000	281700000	112910000	76323000	36587000	150190000	83210000	66981000	199220000	99277000	99939000	185580000	107380000	78197000	2612	943	2461	15883;15884;15885;15886;15887	21646;21647;21648;21649;21650;21651	21648			6	
AILQATLREEK	1	Unmodified	1270.7245	0.72450043	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		34.078	32.938	2;3	8.7763E-10	27503	160511_QHF_FH_JSI10i_3	140.75	91.336			0.97237	0.92364	8.0771	5	0	Median	1.2112	1.0007	2.9065	2	0	Median	0.74746	0.87006	7.4915	2	0	Median	0.97237	0.92364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	702490000	365300000	337190000	442010000	212050000	229960000	235540000	140330000	95207000	24941000	12919000	12022000	0	0	0	2613	2323	2462	15888;15889;15890;15891;15892	21652;21653;21654;21655;21656;21657;21658	21654			7	
AILQHLGLESTCDDSIIVK	1	Unmodified	2111.0933	0.093255043	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.148	74.863	3	0.00011431	64991	160511_QHF_FH_JSI12i_3	71.376	61.846			1.8766	1.8685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8766	1.8685	NaN	1	1	Median	29973000	10096000	19878000	0	0	0	0	0	0	0	0	0	29973000	10096000	19878000	2614	1785	2463	15893	21659	21659			1	
AILQNHTDFK	1	Unmodified	1185.6142	0.6142217	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	3.43		3	10						1	2	4	4	4	27.011	26.428	2;3	7.2021E-09	22524	160511_QHF_FH_JSI11i_3	182.98	150.14			0.87822	1.0113	67.659	11	6	Median	2.3784	2.0173	100.48	2	1	Median	0.87282	1.2118	18.418	3	1	Plateau	0.87822	0.81353	15.756	3	1	Median	1.0154	1.0447	82.025	3	3	Plateau	1562000000	801450000	760560000	105520000	53893000	51631000	301570000	145280000	156280000	445030000	221160000	223870000	709890000	381110000	328780000	2615	3371	2464	15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907	21660;21661;21662;21663;21664;21665;21666;21667;21668;21669;21670;21671;21672;21673;21674	21662			15	
AILQNHTDFKDK	2	Acetyl (K)	1470.7467	0.74669243	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.266	34.626	3	0.0064438	18931	160513_QHF_FH_JSI11Kac_6	54.199	42.929			0.092804	0.091738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.092804	0.091738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6837700	6344600	493060	0	0	0	0	0	0	6837700	6344600	493060	0	0	0	2616	3371	2465	15908	21675	21675	2855		1	
AILSALQSNPIYR	0	Unmodified	1444.8038	0.80381338	2819	Q3MIN7	RGL3	Ral guanine nucleotide dissociation stimulator-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	76.903	68.057	2	2.0708E-109	37871	160513_QHF_FH_JSI10Kac_6	265.01	211.26			1.1892	1.0939	15.66	5	1	Median	1.5076	1.2796	26.095	2	1	Median	0.91778	1.0939	NaN	1	0	Median	1.1892	1.1124	NaN	1	0	Median	1.0024	1.0763	NaN	1	0	Median	268510000	130500000	138010000	27231000	10037000	17194000	121890000	63152000	58738000	62850000	31076000	31774000	56534000	26234000	30300000	2617	2819	2466	15909;15910;15911;15912;15913	21676;21677;21678;21679;21680;21681;21682	21682			7	
AILSHLVK	1	Unmodified	879.55419	0.55418762	3721;5614	Q8TDJ6;Q9Y485	DMXL2;DMXL1	DmX-like protein 2;DmX-like protein 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	31.324	30.937	2;3	0.00077609	26017	160511_QHF_FH_JSI12i_3	73.665	56.425			1.3704	1.2461	18.146	4	0	Median	1.627	1.296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1488	1.0573	NaN	1	0	Median	1.3704	1.3964	21.666	2	0	Median	225300000	105390000	119910000	52848000	22380000	30468000	0	0	0	51390000	22853000	28537000	121060000	60154000	60904000	2618	3721;5614	2467	15914;15915;15916;15917	21683;21684;21685;21686;21687	21686			5	
AILSMNGLSYGVIR	0	Unmodified	1492.8072	0.8071842	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		84.535	83.312	2	3.6504E-05	74198	160511_QHF_FH_JSI11i_3	79.693	47.17			1.0449	0.87437	13.874	3	2	Plateau	1.0449	0.87437	NaN	1	0	Median	0.80638	0.94952	18.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53443000	27298000	26145000	19337000	10378000	8958900	34106000	16920000	17186000	0	0	0	0	0	0	2619	5202	2468	15918;15919;15920;15921	21688;21689;21690;21691;21692	21688			5	
AILSNEATK	1	Unmodified	945.51311	0.51311067	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.538	17.265	2	0.016171	14019	160511_QHF_FH_JSI11i_2	53.775	24.437			0.257	0.25573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.257	0.25573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30360000	22378000	7981600	0	0	0	0	0	0	30360000	22378000	7981600	0	0	0	2620	5	2469	15922	21693	21693			1	
AILTAVHMIR	0	Unmodified	1123.6536	0.65358409	574	O75843	AP1G2	AP-1 complex subunit gamma-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		60.258	51.182	3	0.00064476	28021	160513_QHF_FH_JSI10Kac_6	67.726	59.193			0.72318	0.86426	5.1905	3	1	Plateau	0.91747	0.77989	NaN	1	1	Median	0.71263	0.86426	NaN	1	0	Median	0.85809	0.83171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36737000	19530000	17207000	7327900	3911500	3416400	20987000	11515000	9471800	8422100	4103300	4318900	0	0	0	2621	574	2470	15923;15924;15925	21694;21695;21696	21696			3	
AILTMTQLYK	1	Unmodified	1180.6526	0.65258104	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.43	6.28			4					1	2	1	3	2	1	70.704	66.354	2	7.2417E-09	35573	160513_QHF_FH_JSI11Kac_6	122.13	87.962			1.0142	0.96201	19.177	7	2	Median	1.1489	0.95533	NaN	1	0	Median	0.6338	0.73246	29.801	3	1	Plateau	1.005	0.95538	14.293	2	1	Median	1.105	1.0995	NaN	1	0	Median	310280000	141150000	169130000	33312000	14389000	18923000	68922000	31944000	36978000	104170000	46888000	57285000	103880000	47932000	55944000	2622	3888	2471	15926;15927;15928;15929;15930;15931;15932	21697;21698;21699;21700;21701;21702	21699			4	
AILTMTQLYK	1	Oxidation (M)	1196.6475	0.64749566	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			59.362	48.721	2	0.054303	24794	160513_QHF_FH_JSI10Kac_5	50.878	20.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2623	3888	2471	15933	21703	21703			1	
AILTTIGVLEEPLGNAR	0	Unmodified	1765.9938	0.993799	487	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		93.424	93.424	3	0.021496	83279	160511_QHF_FH_JSI11i_3	23.799	11.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2624	487	2472	15934	21704	21704			1	
AILVDLEPGTMDSVR	0	Oxidation (M)	1630.8236	0.82362212	872;2477;2430	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.17	8	6	4				2	7		6	6	6	9	71.411	67.376	2;3	5.1059E-40	58614	160511_QHF_FH_JSI12i_2	206.97	160.97			1.1275	1.0899	22.437	27	7	Median	1.3069	1.1024	10.91	6	2	Median	0.85968	1.0472	43.649	6	2	Median	1.0891	1.0399	8.9338	6	1	Median	1.1452	1.2013	15.323	9	2	Median	3746000000	1781900000	1964100000	653770000	279530000	374240000	900740000	459210000	441530000	979470000	443230000	536250000	1212000000	599970000	612040000	2625	872;2477;2430	2473	15935;15936;15937;15938;15939;15940;15941;15942;15943;15944;15945;15946;15947;15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961	21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750	21711		414	45	
AILVDLEPGTMDSVR	0	Unmodified	1614.8287	0.8287075	872;2477;2430	P07437;Q13885;Q9BVA1;Q13509	TUBB;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.67	10	9	4					2		6	6	7	6	80.08	78.656	2;3	1.019E-97	65060	160511_QHF_FH_JSI9i_3	256.19	180.81			1.0131	1.0072	31.353	25	10	Median	1.2318	1.0213	14.235	6	2	Median	0.88334	1.059	32.584	6	3	Median	1.0131	0.98783	10.922	7	3	Median	0.92479	0.98396	49.375	6	2	Median	23910000000	12386000000	11523000000	3632500000	1702300000	1930200000	6045100000	3476400000	2568700000	6916100000	3379300000	3536800000	7315800000	3828200000	3487600000	2626	872;2477;2430	2473	15962;15963;15964;15965;15966;15967;15968;15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986	21751;21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763;21764;21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778;21779;21780;21781;21782;21783;21784;21785;21786;21787;21788;21789;21790;21791;21792;21793;21794	21774			44	
AILVLLSK	1	Unmodified	855.57934	0.57933974	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	73.439	68.816	2	0.00010546	36935	160513_QHF_FH_JSI11Kac_6	124.83	86.043			0.97375	0.94512	13.261	8	0	Median	1.0322	0.87458	9.332	2	0	Median	0.78232	0.91823	12.177	2	0	Median	0.93234	0.87472	12.586	2	0	Median	1.0974	1.1101	8.0653	2	0	Median	358560000	172310000	186250000	87801000	42571000	45230000	96180000	44909000	51271000	100540000	47152000	53383000	74045000	37683000	36362000	2627	1213	2474	15987;15988;15989;15990;15991;15992;15993;15994	21795;21796;21797;21798;21799;21800;21801;21802;21803;21804;21805;21806	21796			12	
AILVVFANK	1	Unmodified	973.59605	0.59605244	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	5.77		2	4	2		1		5	4	4	7	4	3	72.019	65.716	2	1.3499E-16	35497	160513_QHF_FH_JSI11Kac_6	168.38	86.747			1.0037	0.9901	14.061	16	0	Median	1.1325	0.91992	12.62	4	0	Linear	0.8416	0.9901	17.905	6	0	Median	0.91046	0.90524	10.303	3	0	Median	1.0227	1.0799	14.817	3	0	Median	6402400000	3203200000	3199200000	1570200000	693710000	876460000	1929300000	1166600000	762690000	1722700000	708970000	1013700000	1180300000	633940000	546330000	2628	1498	2475	15995;15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012	21807;21808;21809;21810;21811;21812;21813;21814;21815;21816;21817;21818;21819;21820;21821;21822;21823;21824;21825;21826;21827;21828;21829;21830;21831;21832;21833;21834;21835;21836;21837;21838	21815			31	
AILVYCLLHYR	0	Unmodified	1419.7697	0.76967648	4860	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		81.838	73.993	3	6.3868E-06	40462	160513_QHF_FH_JSI11Kac_6	100.48	90.425			0.9331	1.0951	26.548	3	0	Median	1.3101	1.1337	NaN	1	0	Median	0.9331	1.0951	NaN	1	0	Median	0.73754	0.7042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	183650000	89809000	93843000	48007000	21048000	26959000	88063000	42122000	45942000	47581000	26639000	20942000	0	0	0	2629	4860	2476	16013;16014;16015	21839;21840;21841;21842	21839			4	
AILWLENYLQTWPSTILVVSHDR	0	Unmodified	2753.4541	0.45408623	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			98.214	91.355	3;4	2.4439E-29	53969	160513_QHF_FH_JSI10Kac_6	151.94	140.42			0.9793	1.1655	61.521	3	0	Median	0.78374	0.65752	NaN	1	0	Median	1.3891	1.6188	46.457	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	592990000	325710000	267270000	205980000	132080000	73902000	387010000	193640000	193370000	0	0	0	0	0	0	2630	5014	2477	16016;16017;16018	21843;21844;21845	21844			2	
AILYLNTGYQR	0	Unmodified	1310.6983	0.69828568	42	CON__ENSEMBL:ENSBTAP00000024146			yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	11.7	6.13			1						2	1	1		1	62.672	56.92	2	1.2266E-07	31325	160513_QHF_FH_JSI10Kac_6	116.73	85.656		+	0.92298	1.1639	26.736	3	0	Plateau	1.3398	1.1639	NaN	1	0	Median	1.0922	1.3116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77996	0.78674	NaN	1	0	Median	97140000	50176000	46964000	13895000	5907600	7987000	41354000	18828000	22526000	0	0	0	41892000	25441000	16451000	2631	42	2478	16019;16020;16021	21846;21847	21847			2	
AIMAHMTVEEIYK	1	Unmodified	1534.7524	0.75237144	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		67.101	57.496	3	0.0013625	31162	160513_QHF_FH_JSI11Kac_6	65.563	52.685			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2632	590	2479	16022	21848	21848			1	
AIMAQLPQEQK	1	Unmodified	1255.6595	0.65945733	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.424	41.458	2	2.2254E-09	35615	160511_QHF_FH_JSI11i_2	130.66	109.15			0.95783	1.0102	1.9622	4	0	Median	1.2017	1.0116	NaN	1	0	Median	0.8144	1.0088	NaN	1	0	Median	0.98281	0.9851	NaN	1	0	Median	0.93348	1.0335	NaN	1	0	Median	395700000	207400000	188300000	92841000	46152000	46688000	80812000	40908000	39904000	119190000	68589000	50605000	102860000	51754000	51104000	2633	1421	2480	16023;16024;16025;16026	21849;21850;21851;21852;21853;21854;21855;21856;21857;21858	21855			10	
AIMEMPSFYSHGLPR	0	Unmodified	1734.8222	0.82218234	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	74.083	73.382	2;3	1.2951E-10	61671	160511_QHF_FH_JSI10i_3	150.22	143.18			0.98501	1.0557	4.9167	7	0	Median	1.3558	1.0929	NaN	1	0	Median	0.93872	1.0902	4.3859	2	0	Median	1.0887	1.0144	5.6355	2	0	Median	0.98358	1.0159	2.1891	2	0	Median	2124100000	1011400000	1112700000	414150000	168570000	245580000	376730000	172590000	204130000	760400000	378730000	381670000	572840000	291500000	281340000	2634	1857	2481	16027;16028;16029;16030;16031;16032;16033	21859;21860;21861;21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872;21873	21864			15	
AIMEMPSFYSHGLPR	0	Oxidation (M)	1750.8171	0.81709696	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	61.917	60.953	3	0.00028542	50021	160511_QHF_FH_JSI9i_3	80.534	70.403			1.1992	1.2171	10.853	5	4	Median	1.4959	1.2301	NaN	1	1	Median	0.89309	1.0204	9.007	2	2	Median	1.3042	1.2183	NaN	1	1	Median	1.1992	1.2171	NaN	1	0	Median	313340000	137630000	175710000	67371000	25403000	41968000	97425000	50666000	46759000	85464000	35683000	49781000	63084000	25884000	37200000	2635	1857	2481	16034;16035;16036;16037;16038	21874;21875;21876;21877;21878	21877		1538	5	
AIMGSGK	1	Unmodified	662.34215	0.34214594	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0.632	1	3	1							1	2	1	1	8.4875	8.2302	2	0.011468	5873	160511_QHF_FH_JSI11i_2	70.912	59.191			1.0701	1.1053	5.2898	5	1	Median	1.455	1.2356	NaN	1	0	Median	0.90396	1.0938	1.4869	2	1	Median	1.1048	1.1323	NaN	1	0	Median	1.0701	1.0971	NaN	1	0	Median	1973200000	938840000	1034400000	310540000	126740000	183810000	739520000	397160000	342360000	532020000	252540000	279480000	391110000	162400000	228710000	2636	1784	2482	16039;16040;16041;16042;16043	21879;21880;21881;21882	21881			4	
AIMGSGKEDYTGK	2	Unmodified	1355.6391	0.63911582	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	19.637	19.647	2;3	0.0001456	15884	160511_QHF_FH_JSI12i_3	130.56	95.118			1.1996	1.2099	57.159	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75342	0.69911	NaN	1	1	Median	2.0798	2.088	53.855	3	3	Plateau	489250000	191680000	297570000	0	0	0	0	0	0	134930000	44270000	90662000	354320000	147410000	206900000	2637	1784	2483	16044;16045;16046;16047;16048	21883;21884;21885;21886;21887	21885			5	
AIMHLLQMQALK	1	Unmodified	1395.773	0.7730473	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			4						2	3	2	1		72.841	68.876	2;3	3.0138E-40	36555	160513_QHF_FH_JSI11Kac_6	166.93	152.67			1.0484	1.0139	19.727	6	2	Median	1.1839	0.95942	18.17	3	1	Plateau	0.98609	1.1471	3.692	2	1	Median	1.1038	1.0714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	247770000	133880000	113890000	130210000	62375000	67839000	72047000	43872000	28175000	45513000	27633000	17880000	0	0	0	2638	2993	2484	16049;16050;16051;16052;16053;16054	21888;21889;21890;21891;21892;21893;21894;21895	21891			8	
AIMLGAKPPKK	3	Unmodified	1152.7053	0.70528531	3628	Q8NDD1	C1orf131	Uncharacterized protein C1orf131	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				22.386	21.116	3	0.02273	16994	160511_QHF_FH_JSI9i_3	42.001	19.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2639	3628	2485	16055	21896	21896			1	
AIMLVWR	0	Unmodified	887.50513	0.50512894	4631	Q9H0E9	BRD8	Bromodomain-containing protein 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	75.956	67.489	2	2.7433E-07	36671	160513_QHF_FH_JSI11Kac_6	137.2	137.2			1.0805	1.0365	11.711	4	0	Median	1.1614	0.98948	NaN	1	0	Median	0.8341	0.99686	NaN	1	0	Median	1.3876	1.2731	NaN	1	0	Median	1.0052	1.0778	NaN	1	0	Median	189570000	92473000	97093000	40200000	19452000	20749000	63500000	35248000	28252000	57926000	24482000	33445000	27939000	13292000	14648000	2640	4631	2486	16056;16057;16058;16059	21897;21898	21897			2	
AIMTYVSSFYHAFSGAQK	1	Unmodified	2006.956	0.95603328	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.35			12	1					10	7	4	7	5	93.73	89.286	2;3	5.1228E-190	42451	160513_QHF_FH_JSI12Kac_6	347.5	320.87			0.71262	0.72774	60.659	22	11	Median	0.4918	0.41685	30.045	7	4	Median	0.39941	0.45883	36.328	3	0	Median	1.2844	1.2454	50.842	7	3	Median	1.329	1.3538	31.104	5	4	Median	46595000000	22896000000	23700000000	16816000000	11079000000	5736800000	935160000	607000000	328160000	16055000000	5643200000	10412000000	12789000000	5566100000	7222800000	2641	361;1021	2487	16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078;16079;16080;16081;16082	21899;21900;21901;21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937	21932			38	
AIMTYVSSFYHAFSGAQK	1	Oxidation (M)	2022.9509	0.9509479	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			3						12	4	4	4	3	82.1	75.335	2;3	4.2073E-97	39591	160513_QHF_FH_JSI9Kac_6	239.61	202.77			0.56949	0.59771	63.362	15	2	Median	0.46491	0.39642	18.057	4	0	Median	0.49366	0.59094	2.2405	4	1	Linear	1.4592	1.376	25.577	4	1	Linear	1.1692	1.2222	8.8026	3	0	Median	8502000000	4953900000	3548100000	3380900000	2094800000	1286100000	2650900000	1757600000	893300000	1093700000	476630000	617040000	1376600000	624920000	751680000	2642	361;1021	2487	16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097	21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959	21947		137	22	
AIMYEETTYSK	1	Unmodified	1334.6064	0.60641871	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.54	7	2					3			2	3	3	4	40.171	37.031	2	6.6129E-06	31544	160511_QHF_FH_JSI12i_2	110.14	91.356			0.92545	0.98472	37.041	12	10	Median	1.3004	1.0737	56.403	2	2	Median	1.0222	1.2064	61.702	3	3	Median	0.87354	0.85937	27.571	3	2	Plateau	0.84763	0.92262	21.801	4	3	Median	1214700000	710520000	504190000	200870000	92948000	107920000	242910000	168050000	74866000	389180000	208950000	180230000	381750000	240580000	141170000	2643	1778	2488	16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109	21960;21961;21962;21963;21964;21965;21966;21967;21968;21969;21970;21971;21972	21963			13	
AINCATSGVVGLVNCLR	0	Unmodified	1802.9131	0.91312261	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			83.582	82.639	2;3	2.2133E-10	69191	160511_QHF_FH_JSI10i_3	164.11	131.16			1.0674	1.2806	37	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0674	1.2806	37	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49344000	18981000	30364000	0	0	0	49344000	18981000	30364000	0	0	0	0	0	0	2644	1650	2489	16110;16111;16112	21973;21974;21975	21973			3	
AINDNTNSR	0	Unmodified	1003.4683	0.46828574	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	3	3	2	5.6588	2.2	2	7.3394E-06	3181	160511_QHF_FH_JSI12i_1	124.23	95.718			0.9399	0.96382	17.576	9	0	Median	1.0855	0.89489	NaN	1	0	Median	0.81357	0.96382	20.653	3	0	Median	1.1053	1.0748	10.762	3	0	Median	0.98608	1.0692	25.993	2	0	Median	2462300000	1296100000	1166200000	574380000	274820000	299560000	683660000	381650000	302010000	537790000	263380000	274410000	666470000	376200000	290260000	2645	2655	2490	16113;16114;16115;16116;16117;16118;16119;16120;16121	21976;21977;21978;21979;21980;21981;21982;21983;21984;21985;21986	21979			11	
AINEAYK	1	Unmodified	807.41267	0.41266834	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	7.5	6.5	2						2			1		1	2	15.931	11.805	2	0.019751	7696	160513_QHF_FH_JSI12Kac_4	80.462	14.79			0.57618	0.62019	42.28	4	2	Median	1.3313	1.0821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.44915	0.44026	NaN	1	1	Median	0.57495	0.62019	34.713	2	1	Median	526800000	281580000	245220000	225590000	92327000	133260000	0	0	0	12527000	8217600	4309300	288690000	181040000	107650000	2646	891	2491	16122;16123;16124;16125	21987;21988;21989	21989			3	
AINFNFGYAK	1	Unmodified	1143.5713	0.57129425	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.43	1	3	5					1	4	3	4	4	3	69.685	65.451	2	2.6767E-19	56898	160511_QHF_FH_JSI12i_3	179.73	156.9			0.99152	0.99816	18.07	12	3	Median	1.3689	1.1444	7.9346	2	1	Median	0.89417	1.0209	27.554	4	1	Median	1.03	0.96262	8.6282	3	1	Plateau	0.80879	0.911	12.308	3	0	Median	1833500000	1066100000	767430000	173450000	67718000	105730000	366630000	217410000	149220000	589700000	358460000	231230000	703730000	422480000	281250000	2647	1609	2492	16126;16127;16128;16129;16130;16131;16132;16133;16134;16135;16136;16137;16138;16139	21990;21991;21992;21993;21994;21995;21996;21997;21998;21999;22000;22001;22002;22003;22004;22005;22006;22007;22008;22009	22005			20	
AINGPTSASGDDISK	1	Unmodified	1431.6842	0.68415175	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	1	4	2	29.466	25.892	2	1.8518E-06	22331	160511_QHF_FH_JSI9i_1	130.56	115.42			0.86967	0.91325	20.534	8	5	Median	0.8576	0.70376	NaN	1	0	Median	0.79138	0.92534	NaN	1	0	Median	0.99924	0.95868	19.475	4	4	Median	1.0167	1.0742	24.813	2	1	Median	373210000	209870000	163340000	92746000	48442000	44304000	91977000	59020000	32956000	126530000	70989000	55541000	61961000	31421000	30541000	2648	1725	2493	16140;16141;16142;16143;16144;16145;16146;16147	22010;22011;22012;22013;22014;22015;22016;22017;22018;22019;22020	22017			11	
AINLQMFHK	1	Unmodified	1100.5801	0.5800848	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	54.252	53.411	3	5.8009E-07	47062	160511_QHF_FH_JSI11i_3	126.41	90.901			0.98224	0.94099	7.287	4	0	Median	1.0295	0.82327	NaN	1	0	Median	0.83423	0.93352	NaN	1	0	Median	1.0104	0.94852	NaN	1	0	Median	0.95489	0.96724	NaN	1	0	Median	832390000	423700000	408690000	155340000	62411000	92928000	134020000	68212000	65805000	214720000	118040000	96679000	328320000	175040000	153280000	2649	4255	2494	16148;16149;16150;16151	22021;22022;22023;22024;22025;22026;22027	22021			7	
AINNYNPK	1	Unmodified	932.47158	0.4715802	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.38	5.91	1	4					3			1	2	2	3	15.906	12.44	2	0.00067397	10330	160511_QHF_FH_JSI11i_2	111.28	64.908			0.90746	0.86693	25.924	8	1	Median	0.93019	0.7901	NaN	1	0	Median	0.67478	0.80699	48.079	2	0	Median	0.84305	0.84389	10.104	2	0	Median	0.96731	1.0351	23.725	3	1	Median	361900000	211790000	150110000	51691000	25629000	26062000	41674000	24182000	17492000	100520000	61512000	39012000	168010000	100460000	67549000	2650	3291	2495	16152;16153;16154;16155;16156;16157;16158;16159	22028;22029;22030;22031;22032;22033;22034;22035	22033			8	
AINPINTFTK	1	Unmodified	1117.6132	0.61315906	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	1	2	54.623	53.721	2	0.00074073	46083	160511_QHF_FH_JSI12i_2	70.056	43.094			0.84541	0.9891	185.49	6	2	Median	0.20366	0.16973	267.03	2	1	Median	0.14498	0.17436	241.95	2	1	Median	0.99091	1.014	NaN	1	0	Median	0.90772	1.0235	NaN	1	0	Median	2448000000	2096100000	351940000	345240000	267350000	77891000	1785300000	1675400000	109920000	162220000	71662000	90561000	155210000	81642000	73572000	2651	2261	2496	16160;16161;16162;16163;16164;16165;16166	22036;22037;22038;22039;22040;22041;22042	22036			7	
AINQGGLTSVAVR	0	Unmodified	1284.715	0.71499837	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.43	4	4	4				3	4	2	5	6	5	5	47.387	42.725	2	1.2982E-41	36659	160511_QHF_FH_JSI12i_3	209.97	164.83			1.0176	1.0409	7.333	20	0	Median	1.2735	1.0524	9.3298	5	0	Median	0.87438	1.0422	7.507	5	0	Median	1.1427	1.0962	8.6308	5	0	Median	0.98067	1.0324	4.2708	5	0	Median	6130000000	3018700000	3111300000	1020500000	434230000	586260000	1508900000	747390000	761510000	1875800000	973910000	901920000	1724800000	863210000	861590000	2652	1922	2497	16167;16168;16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187	22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074;22075;22076;22077;22078;22079;22080;22081;22082;22083;22084;22085	22084			43	
AINQIAAALFTIHK	1	Unmodified	1509.8667	0.86674799	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	86.558	82.006	2;3	1.3109E-23	43308	160513_QHF_FH_JSI10Kac_6	148.18	123.89			1.0281	0.88239	20.133	9	0	Median	1.2652	1.0484	32.181	2	0	Median	0.75697	0.88239	28.462	3	0	Median	0.95185	0.90164	11.331	2	0	Median	0.94303	0.97554	15.198	2	0	Median	3246500000	1481400000	1765100000	863680000	340880000	522790000	900790000	438200000	462600000	1033500000	497710000	535800000	448530000	204580000	243940000	2653	5507	2498	16188;16189;16190;16191;16192;16193;16194;16195;16196	22086;22087;22088;22089;22090;22091;22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111	22111			26	
AINQQTGAFVEISR	0	Unmodified	1532.7947	0.79470526	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							2	3	2	3	52.237	51.504	2	5.1144E-81	43997	160511_QHF_FH_JSI12i_2	245.94	204.49			0.92452	1.0333	22.938	10	4	Median	1.6887	1.3968	29.762	2	0	Median	0.86653	1.074	17.121	3	2	Median	0.83083	0.80396	5.6324	2	0	Median	0.93508	1.0277	6.8002	3	2	Median	1124300000	551760000	572520000	202600000	76843000	125760000	340950000	184560000	156390000	228210000	111870000	116340000	352510000	178480000	174030000	2654	3911	2499	16197;16198;16199;16200;16201;16202;16203;16204;16205;16206	22112;22113;22114;22115;22116;22117;22118;22119;22120;22121;22122;22123;22124;22125;22126	22114			15	
AINTAVK	1	Unmodified	715.42284	0.4228391	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	2	2	1	12.457	10.864	2	0.024871	7136	160513_QHF_FH_JSI11Kac_4	65.777	26.805			0.67819	0.76297	57.307	6	2	Median	1.3616	1.1549	NaN	1	1	Median	0.3731	0.45204	76.842	2	1	Median	0.61445	0.59823	65.506	2	0	Median	0.69944	0.74792	NaN	1	0	Median	1125600000	755400000	370220000	91873000	45750000	46123000	495530000	343890000	151640000	276480000	197380000	79091000	261740000	168380000	93367000	2655	2517	2500	16207;16208;16209;16210;16211;16212	22127;22128;22129;22130;22131;22132	22130			6	
AINTFFAK	1	Unmodified	910.49125	0.49125301	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	51.668	50.925	2	0.0013425	44255	160511_QHF_FH_JSI9i_2	90.777	67.467			1.042	1.0371	9.6774	8	0	Median	1.5088	1.3172	NaN	1	0	Median	0.87178	1.024	7.5346	2	0	Median	1.0478	1.0006	0.4574	2	0	Median	1.0641	1.0923	4.2497	3	0	Plateau	815130000	445050000	370090000	57309000	25664000	31645000	150980000	84303000	66676000	208460000	106910000	101550000	398390000	228170000	170220000	2656	3206	2501	16213;16214;16215;16216;16217;16218;16219;16220	22133;22134;22135;22136	22135			3	
AINTLNGLR	0	Unmodified	970.55598	0.55597854	2700	Q15717	ELAVL1	ELAV-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.55		4	5					2	1	3	2	5	2	38.284	35.839	2	1.6382E-06	29148	160511_QHF_FH_JSI9i_3	131.03	61.599			0.98979	0.97663	37.426	11	4	Median	1.1152	0.9428	7.1349	2	0	Median	0.77768	0.91933	15.656	2	1	Median	0.99052	0.98385	50.472	5	2	Median	0.76396	0.81542	22.053	2	1	Median	1325200000	691910000	633250000	252770000	121610000	131160000	291120000	176540000	114580000	451330000	204850000	246480000	329950000	188910000	141040000	2657	2700	2502	16221;16222;16223;16224;16225;16226;16227;16228;16229;16230;16231;16232	22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150	22143			14	
AINTQEAPVK	1	Unmodified	1069.5768	0.57677356	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	21.366	20.529	2	0.0014676	17389	160511_QHF_FH_JSI9i_1	79.489	42.33			1.0771	1.0241	9.7146	2	0	Median	1.2863	1.0969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90192	0.95607	NaN	1	0	Median	82769000	41794000	40975000	37601000	17155000	20446000	0	0	0	0	0	0	45168000	24639000	20529000	2658	481	2503	16233;16234	22151;22152	22152			1	
AINVFVSANR	0	Unmodified	1089.5931	0.59309232	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	4.94			2					2	7	4	3	2	2	53.533	47.14	2	6.2322E-20	25559	160513_QHF_FH_JSI11Kac_6	159.58	96.867			1.0752	0.96533	10.01	5	3	Median	1.215	1.0217	8.0205	2	1	Median	0.73934	0.88309	NaN	1	0	Median	1.0018	0.94052	NaN	1	1	Median	1.0752	1.1239	NaN	1	1	Median	363720000	185380000	178340000	161800000	73359000	88437000	92058000	55837000	36221000	76677000	39571000	37105000	33189000	16611000	16579000	2659	4445	2504	16235;16236;16237;16238;16239;16240;16241;16242;16243;16244;16245	22153;22154;22155;22156;22157;22158;22159;22160;22161;22162	22155			10	
AINVLLEGNPDTHSWEMVGK	1	Oxidation (M)	2225.0787	0.078667612	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	73.207	73.059	3	1.9638E-08	63386	160511_QHF_FH_JSI12i_3	100.21	87.546			1.0153	1.0194	12.785	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97674	0.93131	NaN	1	0	Median	1.0554	1.1159	NaN	1	0	Median	95040000	37193000	57846000	0	0	0	0	0	0	36369000	13988000	22382000	58670000	23205000	35465000	2660	2505	2505	16246;16247	22163;22164;22165	22165		1981	3	
AINVLLEGNPDTHSWEMVGK	1	Unmodified	2209.0838	0.08375299	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	81.007	80.554	2;3	4.8705E-68	71873	160511_QHF_FH_JSI11i_3	225.6	208.01			0.98875	0.99539	19.145	8	3	Median	0.99283	0.85308	NaN	1	0	Median	0.79996	0.99725	20.16	2	2	Median	1.2721	1.1897	35.019	2	1	Median	1.0156	1.0449	8.4872	3	0	Median	1203400000	570070000	633320000	109770000	49575000	60198000	204770000	106930000	97843000	291840000	121820000	170010000	597000000	291740000	305260000	2661	2505	2505	16248;16249;16250;16251;16252;16253;16254;16255;16256	22166;22167;22168;22169;22170;22171;22172;22173;22174;22175;22176;22177;22178	22166			12	
AINVQEEK	1	Unmodified	929.48181	0.48181054	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.765	14.311	2	0.00096024	11782	160511_QHF_FH_JSI10i_1	95.909	44.717			1.0533	1.0594	31.12	4	0	Median	1.1147	0.92362	NaN	1	0	Median	0.9953	1.2152	NaN	1	0	Median	1.2989	1.2639	NaN	1	0	Median	0.60104	0.64416	NaN	1	0	Median	1145500000	582390000	563130000	323940000	161510000	162430000	277420000	132460000	144950000	265600000	128710000	136900000	278570000	159720000	118850000	2662	2470	2506	16257;16258;16259;16260	22179;22180;22181;22182;22183;22184	22182			6	
AIPADSPTDQEPK	1	Unmodified	1367.6569	0.65687437	5688	Q9Y5Y0	FLVCR1	Feline leukemia virus subgroup C receptor-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	26.829	26.049	2	4.9692E-05	23209	160511_QHF_FH_JSI12i_1	77.64	48.167			0.86048	0.85181	4.4964	2	1	Median	1.0027	0.82515	NaN	1	0	Median	0.73847	0.87933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114010000	67563000	46452000	53294000	27998000	25296000	60721000	39565000	21156000	0	0	0	0	0	0	2663	5688	2507	16261;16262;16263	22185;22186;22187	22185			2	
AIPDLTAPVAAVQAAVSNLVR	0	Unmodified	2075.1739	0.17388863	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.666	2	8	7							3	5	5	4	103.08	103.01	2;3	6.5299E-86	91530	160511_QHF_FH_JSI10i_2	194.92	185.5			1.0141	1.0106	11.292	16	0	Median	1.1542	0.97973	3.9427	2	0	Median	0.84573	1.0022	12.599	5	0	Median	1.0935	1.0328	12.051	5	0	Median	1.1264	1.149	13.352	4	0	Linear	5056200000	2498700000	2557400000	317700000	152480000	165220000	640130000	343460000	296660000	1717100000	838170000	878910000	2381200000	1164600000	1216600000	2664	1139	2508	16264;16265;16266;16267;16268;16269;16270;16271;16272;16273;16274;16275;16276;16277;16278;16279;16280	22188;22189;22190;22191;22192;22193;22194;22195;22196;22197;22198;22199;22200;22201;22202;22203;22204;22205;22206;22207	22203			20	
AIPGVVEK	1	Unmodified	811.48035	0.48035398	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		31.853	31.103	2	0.014487	27302	160511_QHF_FH_JSI9i_1	51.346	17.343			1.0409	0.91055	1.8138	2	1	Median	1.148	0.9223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94387	0.89895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166210000	76672000	89540000	59743000	25777000	33966000	0	0	0	106470000	50894000	55575000	0	0	0	2665	1532	2509	16281;16282	22208;22209	22209			2	
AIPLAIFQAEPTVRK	1	Unmodified	1652.9614	0.96137665	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			79.143	77.757	3	0.017805	65305	160511_QHF_FH_JSI10i_3	33.301	28.752			0.7406	0.7347	1.6657	2	0	Median	0.88801	0.7434	NaN	1	0	Median	0.61766	0.7261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23819000	13772000	10047000	14801000	8648800	6152400	9017300	5123000	3894300	0	0	0	0	0	0	2666	2257	2510	16283;16284	22210;22211;22212	22210			3	
AIPNNQVLGK	1	Unmodified	1052.5978	0.59784335	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.36	6	4	2				1			4	3	3	3	34.335	32.693	2	1.0644E-07	29351	160511_QHF_FH_JSI11i_1	121.99	88.192			0.96278	0.97601	56.963	12	3	Median	1.1754	0.9559	24.934	3	0	Median	0.7984	0.96434	94.89	3	1	Median	0.90798	0.88541	17.279	3	0	Plateau	0.88516	0.98781	66.329	3	2	Median	3085600000	1645500000	1440100000	522720000	243510000	279210000	774420000	443650000	330770000	861560000	442090000	419460000	926910000	516210000	410690000	2667	455	2511	16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297	22213;22214;22215;22216;22217;22218;22219;22220;22221;22222;22223;22224;22225;22226;22227;22228	22213			16	
AIPNNQVLGKIER	1	Acetyl (K)	1492.8362	0.83617614	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.68	62.95	2	0.017071	33607	160513_QHF_FH_JSI11Kac_5	49.5	21.758			0.51439	0.49354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51439	0.49354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2474900	1851700	623220	0	0	0	0	0	0	2474900	1851700	623220	0	0	0	2668	455	2512	16298	22229	22229	230		1	
AIPNQGEILVIR	0	Unmodified	1321.7718	0.77178497	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	75.637	65.045	2	0.0033741	34661	160513_QHF_FH_JSI11Kac_5	74.162	45.075			0.91853	0.90421	44.695	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5791	1.7858	NaN	1	0	Median	0.91853	0.90421	NaN	1	0	Median	0.72362	0.76925	NaN	1	0	Median	10189000	4810900	5378500	0	0	0	2579000	1140100	1438900	5429500	2552800	2876700	2180900	1118100	1062800	2669	1711	2513	16299;16300;16301	22230	22230			1	
AIPQGVTR	0	Unmodified	840.48175	0.48175096	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	19.779	19.786	2	0.0077371	16558	160511_QHF_FH_JSI11i_3	58.604	20.234			1.2031	1.165	0.73335	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2685	1.159	NaN	1	0	Median	1.1411	1.1711	NaN	1	0	Median	136350000	60566000	75789000	0	0	0	0	0	0	70574000	31706000	38868000	65780000	28860000	36920000	2670	3206	2514	16302;16303	22231	22231			1	
AIPQLQGYLR	0	Unmodified	1157.6557	0.65569258	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.75	3	4	4						3	3	3	4	4	68.535	65.989	2	5.8143E-14	55445	160511_QHF_FH_JSI10i_3	157.52	133.36			1.0414	1.0929	29.056	14	1	Median	1.4206	1.1501	37.084	3	1	Plateau	0.9166	1.1012	11.209	3	0	Median	1.0888	1.0698	34.547	4	0	Median	0.94347	0.96689	26.488	4	0	Median	18933000000	8988300000	9944600000	3112500000	1314400000	1798100000	3805600000	1872900000	1932700000	6644800000	3086500000	3558300000	5370100000	2714500000	2655500000	2671	2196	2515	16304;16305;16306;16307;16308;16309;16310;16311;16312;16313;16314;16315;16316;16317	22232;22233;22234;22235;22236;22237;22238;22239;22240;22241;22242;22243;22244;22245;22246;22247;22248;22249;22250;22251;22252;22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263;22264;22265;22266;22267;22268;22269;22270;22271;22272	22241			41	
AIPQLQGYLRSVFALTNGIYPHK	1	Unmodified	2585.4118	0.41182749	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.372	89.651	4	2.5192E-14	51684	160513_QHF_FH_JSI10Kac_6	167.24	147.52			0.15055	0.18056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15055	0.18056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124480000	109540000	14935000	0	0	0	124480000	109540000	14935000	0	0	0	0	0	0	2672	2196	2516	16318	22273	22273			1	
AIPTTGR	0	Unmodified	714.40244	0.40243801	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	5.09	3	2						1		2	1	1	2	14.011	10.363	2	0.011547	9437	160511_QHF_FH_JSI11i_1	61.494	3.2486			1.2065	1.0237	11.771	3	1	Median	1.3153	1.1158	12.178	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85932	0.97095	NaN	1	0	Median	482780000	240530000	242250000	219700000	100230000	119470000	0	0	0	0	0	0	263080000	140300000	122780000	2673	1254	2517	16319;16320;16321;16322;16323;16324	22274;22275;22276;22277;22278;22279;22280	22274			7	
AIPTVNHSGTFSPQAPVPTTVPVVDVR	0	Unmodified	2785.4763	0.47627824	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	82.236	81.694	3	6.4414E-32	71014	160511_QHF_FH_JSI12i_3	148.9	143.7			1.0108	1.0297	10.18	6	1	Median	1.198	1.0215	NaN	1	0	Median	0.92934	1.1565	NaN	1	0	Median	1.0108	0.98254	7.7517	2	0	Median	0.94891	1.0038	16.365	2	1	Median	823050000	406300000	416750000	89527000	38476000	51051000	109330000	56058000	53275000	323730000	150850000	172880000	300460000	160920000	139540000	2674	2732	2518	16325;16326;16327;16328;16329;16330	22281;22282;22283;22284;22285;22286;22287;22288;22289;22290;22291	22291			11	
AIPVSPSAVEEDEDEDGHTVVATAR	0	Unmodified	2593.2144	0.21436905	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.597	58.952	3	1.7265E-22	53513	160511_QHF_FH_JSI11i_1	140.45	132.92			1.1038	1.1344	11.186	4	0	Median	1.1201	0.93932	NaN	1	0	Median	0.9754	1.1569	NaN	1	0	Median	1.2438	1.2153	NaN	1	0	Median	1.0878	1.1124	NaN	1	0	Median	209500000	101880000	107620000	38007000	18531000	19476000	59106000	30410000	28696000	55108000	26235000	28873000	57281000	26701000	30580000	2675	2253	2519	16331;16332;16333;16334	22292;22293;22294;22295;22296;22297;22298;22299;22300	22293			9	
AIPVSQQMEGPHLPNK	1	Unmodified	1744.893	0.89303909	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		48.727	48.727	3	0.0033074	43090	160511_QHF_FH_JSI11i_3	50.079	46.101			0.82547	0.77165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82547	0.77165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45258000	26937000	18321000	0	0	0	0	0	0	45258000	26937000	18321000	0	0	0	2676	1181	2520	16335	22301	22301			1	
AIPYMQVILMLTTDLDGEDEK	1	Unmodified	2394.1699	0.16985038	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.89	95.169	3	0.0053878	56132	160513_QHF_FH_JSI10Kac_6	51.469	42.869			0.71907	0.85463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71907	0.85463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66610000	42225000	24385000	0	0	0	66610000	42225000	24385000	0	0	0	0	0	0	2677	2947	2521	16336	22302	22302			1	
AIQAAFFYLEPR	0	Unmodified	1424.7452	0.74523587	74	CON__Q3SZR3			yes	yes	0	0	0	0				By MS/MS	16	0									1				1	85.608	76.166	2	1.7057E-07	40612	160513_QHF_FH_JSI12Kac_6	138.71	108.9		+	0.70597	0.73879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70597	0.73879	NaN	1	1	Median	32717000	15544000	17173000	0	0	0	0	0	0	0	0	0	32717000	15544000	17173000	2678	74	2522	16337	22303	22303			1	
AIQAELLK	1	Unmodified	884.53312	0.53311783	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.25	0.433	3	1									2	1	1	42.721	42.129	2	0.0049375	37952	160511_QHF_FH_JSI11i_1	67.169	8.2522			2.5218	2.6309	49.694	4	0	Median	NaN	NaN	NaN	0	0	Median	2.6631	3.2574	68.777	2	0	Median	1.8834	1.8325	NaN	1	0	Median	3.3765	3.4559	NaN	1	0	Median	147230000	46092000	101140000	0	0	0	86338000	29810000	56528000	34297000	10963000	23334000	26593000	5318800	21274000	2679	2276	2523	16338;16339;16340;16341	22304;22305	22304			2	
AIQAELLKVK	2	Acetyl (K)	1153.7071	0.70705945	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		72.615	61.733	2	0.053337	33618	160513_QHF_FH_JSI11Kac_4	59.245	9.8271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2680	2276	2524	16342	22306	22306			1	
AIQAFVPEIFHR	0	Unmodified	1426.7721	0.77211932	2422	Q13472	TOP3A	DNA topoisomerase 3-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			81.48	80.15	3	0.0013603	65959	160511_QHF_FH_JSI9i_3	55.452	47.728			1.3517	1.3699	24.046	2	1	Median	1.3664	1.1557	NaN	1	1	Median	1.3371	1.6238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16483000	7395200	9087800	10468000	4726200	5741900	6014800	2669000	3345900	0	0	0	0	0	0	2681	2422	2525	16343;16344;16345;16346	22307;22308;22309;22310	22310			4	
AIQALNGR	0	Unmodified	841.477	0.47699993	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.94			4					3		1	2	2	2	20.266	15.992	2	0.003249	14037	160511_QHF_FH_JSI11i_3	73.975	30.975			1.0308	1.0179	18.983	7	1	Median	1.3781	1.0965	NaN	1	0	Median	0.81557	0.96007	8.1577	2	0	Median	1.1096	1.0649	6.3876	2	0	Median	0.81651	0.86303	38.201	2	1	Median	501910000	238400000	263510000	52029000	19395000	32634000	94021000	46597000	47423000	153720000	75074000	78643000	202140000	97330000	104810000	2682	5315	2526	16347;16348;16349;16350;16351;16352;16353	22311;22312;22313;22314;22315;22316	22311			6	
AIQASLAK	1	Unmodified	800.4756	0.47560295	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	1.16						2		3	2	1	1	3	2	28.598	19.935	2	0.0026598	12072	160513_QHF_FH_JSI11Kac_5	89.55	2.2272			0.90263	0.98338	23.556	6	0	Median	1.2293	1.0328	NaN	1	0	Median	0.86064	1.0254	NaN	1	0	Median	1.0076	0.99816	8.0269	2	0	Median	0.68212	0.73064	35.674	2	0	Median	130350000	67652000	62700000	47035000	22279000	24756000	16989000	8933200	8056200	38487000	20866000	17621000	27841000	15573000	12268000	2683	4880	2527	16354;16355;16356;16357;16358;16359;16360	22317;22318;22319;22320;22321;22322;22323	22322			7	
AIQAVATNPK	1	Unmodified	1011.5713	0.57129425	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	19.303	19.016	2	0.00042695	16578	160511_QHF_FH_JSI12i_1	74.92	46.022			1.0699	1.225	17.157	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0261	1.225	NaN	1	0	Median	1.6299	1.5666	NaN	1	0	Median	1.0699	1.1261	NaN	1	0	Median	141960000	61493000	80468000	0	0	0	54792000	27430000	27362000	46302000	15442000	30860000	40866000	18621000	22245000	2684	3022	2528	16361;16362;16363	22324	22324			1	
AIQDAILEVLK	1	Unmodified	1211.7125	0.71253876	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	95.349	95.085	2	3.4288E-07	81904	160511_QHF_FH_JSI12i_2	119.16	80.007			1.0198	1.0512	12.349	6	0	Median	1.1024	0.92828	NaN	1	0	Median	0.85283	0.9916	13.321	2	0	Median	1.1779	1.1779	9.7149	2	0	Median	0.89056	1.0141	NaN	1	0	Median	181880000	89116000	92767000	40322000	18022000	22300000	57303000	28318000	28985000	48323000	23152000	25171000	35935000	19623000	16312000	2685	3382	2529	16364;16365;16366;16367;16368;16369	22325;22326;22327;22328;22329;22330;22331;22332	22325			8	
AIQDEIR	0	Unmodified	843.44503	0.4450311	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.164	20.848	2	0.0072267	18278	160511_QHF_FH_JSI12i_1	89.55	16.511			0.80678	0.82694	1.2309	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8477	0.83417	NaN	1	1	Median	0.76783	0.81978	NaN	1	1	Median	223290000	119390000	103900000	0	0	0	0	0	0	115400000	62734000	52665000	107890000	56653000	51238000	2686	2379	2530	16370;16371	22333;22334	22334			2	
AIQDGTIVLMGTYDDGATK	1	Unmodified	1967.951	0.95100748	3833	Q92520	FAM3C	Protein FAM3C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	73.838	73.443	2;3	6.3421E-09	66786	160511_QHF_FH_JSI11i_1	117.08	102.52			0.66807	0.75085	27.046	5	2	Median	NaN	NaN	NaN	0	0	Median	0.66146	0.75085	NaN	1	0	Median	0.6596	0.63281	1.8433	2	1	Median	1.0099	1.0295	22.628	2	1	Median	152040000	86886000	65153000	0	0	0	31594000	20292000	11302000	64739000	36724000	28016000	55705000	29871000	25834000	2687	3833	2531	16372;16373;16374;16375;16376	22335;22336;22337;22338	22335			4	
AIQDHLLEVEQSK	1	Unmodified	1508.7835	0.78347187	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.58	1	8	3					4		3	4	4	5	47.943	45.222	2;3	1.1414E-30	39742	160511_QHF_FH_JSI10i_2	211.77	193.5			1.0452	1.0129	15.403	15	0	Median	1.0452	0.89102	9.0543	3	0	Median	0.74328	0.87682	4.9319	3	0	Median	1.0752	1.0025	7.1914	4	0	Linear	1.0969	1.1916	20.356	5	0	Median	1934800000	890920000	1043900000	278730000	125340000	153390000	301530000	166750000	134780000	397430000	187220000	210200000	957120000	411600000	545520000	2688	1016	2532	16377;16378;16379;16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392	22339;22340;22341;22342;22343;22344;22345;22346;22347;22348;22349;22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364	22357			26	
AIQDPAFSDGIR	0	Unmodified	1288.6412	0.64116473	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1			1	1	1	1	51.882	48.707	2	3.6219E-05	43988	160511_QHF_FH_JSI10i_1	104.52	64.478			1.5679	1.4147	23.857	4	1	Median	1.6315	1.3067	NaN	1	0	Median	1.1771	1.3591	NaN	1	0	Median	1.5068	1.4727	NaN	1	0	Median	2.0206	2.197	NaN	1	1	Median	911550000	391260000	520290000	244230000	91105000	153130000	313710000	151290000	162420000	349150000	147310000	201840000	4465600	1565100	2900500	2689	3290	2533	16393;16394;16395;16396	22365;22366;22367;22368	22365			4	
AIQEHPVVLLPSHR	0	Unmodified	1594.8944	0.89435972	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				42.462	40.901	3;4	0.0033843	33371	160511_QHF_FH_JSI9i_3	53.169	42.064			1.3569	1.0901	24.436	2	1	Median	1.3569	1.0901	24.436	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72971000	33534000	39437000	72971000	33534000	39437000	0	0	0	0	0	0	0	0	0	2690	265	2534	16397;16398	22369;22370	22369			1	
AIQESNDTNK	1	Unmodified	1118.5204	0.52038089	3702	Q8TCD1	C18orf32	UPF0729 protein C18orf32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	7.8462	3.6223	2	4.9103E-14	3973	160511_QHF_FH_JSI12i_1	159.37	113.65			0.74717	0.80987	46.337	8	4	Median	1.4734	1.1828	4.4164	2	1	Median	1.1751	1.3994	63.568	2	2	Median	0.66507	0.64732	17.9	2	0	Median	0.59099	0.61076	8.9777	2	1	Median	461800000	247160000	214640000	96353000	34839000	61514000	176740000	92594000	84150000	91086000	56586000	34500000	97616000	63143000	34473000	2691	3702	2535	16399;16400;16401;16402;16403;16404;16405;16406	22371;22372;22373;22374;22375;22376;22377;22378	22373			8	
AIQEWLK	1	Unmodified	886.49125	0.49125301	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	1	2	2	50.578	49.668	2	0.017878	43743	160511_QHF_FH_JSI11i_3	60.799	31.933			0.60267	0.60692	35.465	7	0	Median	0.56713	0.46368	12.927	2	0	Median	0.6159	0.7007	NaN	1	0	Median	0.75199	0.74639	40.615	2	0	Median	0.7608	0.82583	43.556	2	0	Median	614360000	363300000	251050000	122710000	74101000	48613000	19844000	12845000	6998600	245370000	141680000	103690000	226430000	134680000	91749000	2692	2817	2536	16407;16408;16409;16410;16411;16412;16413	22379;22380;22381;22382;22383;22384	22379			6	
AIQFYLEFK	1	Unmodified	1157.6121	0.61209643	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.195	74.953	2	2.1708E-07	39601	160513_QHF_FH_JSI12Kac_6	141.48	95.054			1.1892	1.252	26.523	4	0	Median	0.98802	0.83916	NaN	1	0	Median	1.295	1.5318	NaN	1	0	Median	1.4426	1.3841	NaN	1	0	Median	1.0919	1.1325	NaN	1	0	Median	625420000	290050000	335360000	159000000	79375000	79629000	222510000	107590000	114920000	123790000	46627000	77164000	120120000	56462000	63653000	2693	2155	2537	16414;16415;16416;16417	22385;22386;22387;22388;22389;22390;22391	22389			7	
AIQGGTSHHLGQNFSK	1	Unmodified	1680.8332	0.83321603	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			15						9	7	10	4	3	22.633	18.946	2;3;4	7.7256E-30	15084	160511_QHF_FH_JSI9i_3	218.85	194.56			0.96582	0.86092	46.783	21	10	Median	1.0227	0.82202	31.97	6	2	Median	0.91112	1.0563	65	8	6	Median	0.8591	0.80208	48.057	4	1	Median	0.8538	0.86092	21.065	3	1	Plateau	2919300000	1552300000	1367000000	1413000000	697130000	715840000	696510000	429150000	267360000	743560000	388210000	355350000	66244000	37802000	28442000	2694	878	2538	16418;16419;16420;16421;16422;16423;16424;16425;16426;16427;16428;16429;16430;16431;16432;16433;16434;16435;16436;16437;16438;16439;16440;16441	22392;22393;22394;22395;22396;22397;22398;22399;22400;22401;22402;22403;22404;22405;22406;22407;22408;22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428;22429	22418			38	
AIQINPAFADAHSNLASIHK	1	Unmodified	2117.1018	0.10178632	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	62.151	61.555	3;4	5.6241E-19	53107	160511_QHF_FH_JSI12i_3	158.65	147.37			1.0338	1.0202	8.0305	6	2	Median	1.3985	1.1042	NaN	1	0	Median	0.83339	0.97391	NaN	1	0	Median	1.1684	1.1188	7.7942	2	1	Median	0.96984	0.97781	0.74859	2	1	Median	1705800000	794390000	911380000	166220000	65367000	100860000	186380000	94954000	91423000	533020000	289390000	243630000	820160000	344680000	475480000	2695	274	2539	16442;16443;16444;16445;16446;16447	22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440	22439			11	
AIQLEPDQIIHYHGVVK	1	Unmodified	1959.0578	0.057796235	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.635	68.337	4	0.049441	59156	160511_QHF_FH_JSI12i_3	25.167	18.9			0.93365	0.96984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93365	0.96984	NaN	1	0	Median	38627000	21055000	17571000	0	0	0	0	0	0	0	0	0	38627000	21055000	17571000	2696	2434	2540	16448	22441	22441			0	
AIQLEYSEAR	0	Unmodified	1178.5932	0.5931519	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.22	2	1					2			1	2	1	1	42.449	39.336	2	0.0013043	33809	160511_QHF_FH_JSI11i_2	77.662	56.716			0.74693	0.76353	18.671	4	2	Median	0.9176	0.73713	NaN	1	0	Median	0.74693	0.85981	11.818	2	1	Median	0.59561	0.59559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	443870000	297730000	146140000	38836000	25508000	13328000	163270000	106410000	56855000	241760000	165810000	75953000	0	0	0	2697	313	2541	16449;16450;16451;16452;16453	22442;22443;22444;22445;22446;22447	22446			6	
AIQLEYSEARR	0	Unmodified	1334.6943	0.69426293	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.57	0.495		3	4							3	4			31.831	30.618	2;3	2.712E-10	25437	160511_QHF_FH_JSI10i_3	135.99	114.76			1.438	1.2891	23.134	7	1	Median	1.5371	1.2891	7.5682	3	1	Median	1.053	1.2542	31.996	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	668400000	285010000	383390000	276960000	94904000	182060000	391440000	190100000	201330000	0	0	0	0	0	0	2698	313	2542	16454;16455;16456;16457;16458;16459;16460	22448;22449;22450;22451;22452;22453;22454	22448			7	
AIQLNPSYIR	0	Unmodified	1173.6506	0.6506072	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.26	6.05		5	7			4	3	3	5	4	7	7	9	60.114	54.692	2	5.0961E-11	47959	160511_QHF_FH_JSI10i_2	147.51	75.023			1.0212	1.0804	21.452	24	12	Median	1.2434	1.0564	43.891	4	1	Median	0.89651	1.0614	16.512	7	2	Median	1.218	1.1587	17.96	6	4	Median	0.93695	1.0286	12.164	7	5	Median	2343400000	1110500000	1232900000	254320000	114380000	139940000	441420000	233700000	207720000	744160000	334400000	409760000	903520000	428020000	475500000	2699	4293	2543	16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478;16479;16480;16481;16482;16483;16484;16485;16486;16487	22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472;22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483;22484;22485;22486	22480			30	
AIQLNSNSVQALLLK	1	Unmodified	1610.9356	0.93555583	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	90.472	89.913	2	1.3498E-14	78187	160511_QHF_FH_JSI12i_3	158.42	115.11			1.089	1.1656	10.771	6	1	Median	1.4626	1.2858	NaN	1	0	Median	1.0471	1.243	9.3927	2	1	Median	1.0734	1.0224	NaN	1	0	Median	1.0643	1.0994	8.563	2	0	Median	162260000	77721000	84539000	33213000	13637000	19575000	35035000	20792000	14243000	15321000	6701400	8619600	78693000	36591000	42101000	2700	5351	2544	16488;16489;16490;16491;16492;16493	22487;22488;22489;22490;22491;22492;22493	22493			5	
AIQLSGAEQLEALK	1	Unmodified	1469.809	0.80895834	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								4	2	2	2	71.068	70.321	2	6.4589E-15	63673	160511_QHF_FH_JSI10i_1	163.99	127.57			1.2791	1.2558	9.8288	10	6	Median	1.3835	1.1589	10.147	4	4	Median	0.9413	1.1235	13.732	2	1	Median	1.3064	1.3019	2.0415	2	1	Median	1.193	1.276	0.032582	2	0	Median	810870000	386780000	424090000	240310000	105440000	134870000	214200000	118040000	96161000	170510000	79884000	90630000	185850000	83420000	102430000	2701	4411	2545	16494;16495;16496;16497;16498;16499;16500;16501;16502;16503	22494;22495;22496;22497;22498;22499;22500;22501;22502;22503;22504;22505	22499			12	
AIQSLKK	2	Unmodified	786.49634	0.49633839	592	O75964;Q7Z4Y8	ATP5L;ATP5L2	ATP synthase subunit g, mitochondrial;ATP synthase subunit g 2, mitochondrial	yes	no	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	9.1273	8.8545	2	0.045807	6460	160511_QHF_FH_JSI9i_3	57.811	13.28			0.64421	0.59301	113.68	2	2	Median	1.6355	1.3248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25374	0.26543	NaN	1	1	Median	923590000	574660000	348930000	393740000	181310000	212430000	0	0	0	0	0	0	529850000	393350000	136490000	2702	592	2546	16504;16505	22506;22507	22506			2	
AIQSNQPDR	0	Unmodified	1027.5047	0.50467125	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	6.9169	6.5812	2	0.00054075	4253	160511_QHF_FH_JSI9i_1	78.77	59.293			1.0097	1.0141	13.824	4	0	Median	1.5466	1.2867	NaN	1	0	Median	0.81479	0.95884	NaN	1	0	Median	1.112	1.0703	NaN	1	0	Median	0.91678	0.96093	NaN	1	0	Median	208340000	99165000	109180000	44826000	18939000	25887000	56209000	29599000	26610000	47986000	20330000	27656000	59322000	30297000	29025000	2703	5114	2547	16506;16507;16508;16509	22508;22509	22509			2	
AIQTLGYFPVGDGDFPHQK	1	Unmodified	2089.0269	0.026890038	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	2	3	77.736	77.103	2;3	9.76E-11	68532	160511_QHF_FH_JSI10i_2	122.22	106.44			0.86096	0.94659	68.577	8	4	Median	2.812	2.425	135.97	2	1	Median	0.8135	1.0044	5.4582	2	2	Median	1.1171	1.0691	32.379	2	0	Median	0.79368	0.84064	6.0041	2	1	Median	1250300000	660900000	589450000	150380000	64390000	85988000	227290000	126630000	100660000	417500000	193850000	223650000	455190000	276030000	179150000	2704	2997	2548	16510;16511;16512;16513;16514;16515;16516;16517;16518	22510;22511;22512;22513;22514;22515;22516;22517;22518;22519;22520;22521;22522;22523;22524;22525	22521			16	
AIQWGEDGRPFHYLFYTGK	1	Unmodified	2284.1065	0.10653734	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	81.25	72.875	3;4	3.3035E-18	38401	160513_QHF_FH_JSI12Kac_6	133.16	98.122			0.91333	0.91692	12.029	9	2	Median	1.1913	1.0246	15.706	2	0	Median	0.90359	1.0612	4.5618	2	0	Median	0.94774	0.91117	14.928	3	2	Median	0.86065	0.91144	0.66884	2	0	Median	1680500000	862420000	818040000	491090000	234170000	256920000	668050000	359630000	308410000	229800000	108700000	121100000	291530000	159920000	131600000	2705	2115	2549	16519;16520;16521;16522;16523;16524;16525;16526;16527	22526;22527;22528;22529;22530;22531;22532;22533;22534;22535;22536;22537;22538	22534			12	
AIRDFFWK	1	Unmodified	1081.5709	0.57090032	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		62.462	62.462	3	0.0023828	55542	160511_QHF_FH_JSI11i_3	59.245	35.817			0.8626	0.82084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8626	0.82084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36896000	16933000	19964000	0	0	0	0	0	0	36896000	16933000	19964000	0	0	0	2706	5555	2550	16528	22539;22540	22540			2	
AIRDGVIEASINHEK	1	Unmodified	1650.8689	0.86893283	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	3	3	1	1	36.881	34.005	3;4	8.1693E-06	29312	160511_QHF_FH_JSI11i_3	83.966	72.051			1.0279	0.9818	22.311	5	2	Median	1.1053	0.91679	9.6889	2	0	Median	0.84229	1.0104	28.577	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	257330000	134060000	123280000	173020000	88957000	84066000	84310000	45099000	39211000	0	0	0	0	0	0	2707	313	2551	16529;16530;16531;16532;16533;16534;16535;16536	22541;22542;22543;22544;22545;22546;22547;22548;22549	22541			9	
AIRPQIDLK	1	Unmodified	1052.6342	0.63422886	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	36.089	35.238	2;3	0.0006549	28737	160511_QHF_FH_JSI9i_3	94.114	55.152			0.81729	0.79057	19.517	7	0	Median	1.065	0.86667	5.7335	2	0	Median	0.66176	0.77555	2.7124	2	0	Median	0.86644	0.82999	10.764	2	0	Median	0.48611	0.5076	NaN	1	0	Median	2013100000	1041500000	971630000	675740000	316730000	359000000	701060000	378260000	322790000	598250000	327130000	271120000	38088000	19379000	18709000	2708	2094	2552	16537;16538;16539;16540;16541;16542;16543	22550;22551;22552;22553;22554;22555;22556;22557;22558	22558			9	
AISAANLHLR	0	Unmodified	1064.6091	0.60907674	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	37.183	36.409	3	6.6536E-12	29759	160511_QHF_FH_JSI9i_3	125.57	80.411			1.2473	1.127	23.599	4	0	Median	1.4084	1.163	NaN	1	0	Median	0.94418	1.0921	NaN	1	0	Median	1.1046	1.0525	NaN	1	0	Median	1.7911	1.7532	NaN	1	0	Median	698260000	325660000	372600000	324030000	158980000	165050000	180690000	89958000	90728000	64932000	23663000	41269000	128610000	53057000	75551000	2709	3101	2553	16544;16545;16546;16547	22559;22560;22561;22562	22561			4	
AISAVLLLLLK	1	Unmodified	1152.7846	0.78458149	2980	Q5VSL9	STRIP1	Striatin-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		98.074	90.508	2	4.9174E-16	50896	160513_QHF_FH_JSI11Kac_6	143.7	131.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2710	2980	2554	16548;16549	22563;22564	22563			2	
AISEAQESVTK	1	Unmodified	1161.5877	0.58773217	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.789	18.216	2	3.6071E-05	15457	160511_QHF_FH_JSI11i_1	97.813	66.441			1.1493	1.066	35.776	3	1	Median	1.5203	1.2624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1493	1.066	NaN	1	0	Median	0.62343	0.63528	NaN	1	1	Median	219820000	111540000	108280000	67004000	30988000	36015000	0	0	0	68466000	34901000	33565000	84351000	45653000	38698000	2711	3128	2555	16550;16551;16552;16553	22565;22566;22567;22568;22569;22570	22565			6	
AISEMKSTFLK	2	Unmodified	1253.669	0.66895938	2290	Q0VDD8	DNAH14	Dynein heavy chain 14, axonemal	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			80.646	79.296	2	0.021257	66522	160511_QHF_FH_JSI10i_3	60.91	3.9945			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2712	2290	2556	16554	22571	22571			1	
AISEPNFSVAYANMCR	0	Unmodified	1828.8236	0.8236389	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	70.978	70.299	2	1.537E-10	61523	160511_QHF_FH_JSI11i_2	151.1	142.37			1.0183	1.0584	19.548	6	3	Median	1.012	0.85105	NaN	1	1	Median	0.89542	1.0584	12.265	2	2	Median	0.82286	0.81327	NaN	1	0	Median	1.1975	1.2512	8.1476	2	0	Median	216620000	109540000	107080000	26698000	12475000	14223000	57777000	31960000	25818000	54595000	27188000	27407000	77551000	37917000	39634000	2713	2217	2557	16555;16556;16557;16558;16559;16560	22572;22573;22574;22575;22576;22577	22576			6	
AISEQTGK	1	Unmodified	832.42905	0.42904669	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.46	4	1	1			3				1	3	2	3	7.0854	4.4771	2	0.00033075	4308	160511_QHF_FH_JSI10i_1	111.82	86.922			0.95274	0.98258	27.927	9	1	Median	1.4825	1.2157	NaN	1	0	Median	0.95274	1.1338	37.637	3	1	Median	0.91832	0.90177	12.136	2	0	Median	0.81881	0.8743	19.468	3	0	Median	5545400000	2915600000	2629800000	1464800000	648560000	816190000	1309200000	739380000	569790000	1276500000	723670000	552820000	1495000000	804030000	691010000	2714	1798	2558	16561;16562;16563;16564;16565;16566;16567;16568;16569	22578;22579;22580;22581;22582;22583;22584;22585;22586;22587;22588;22589	22583			12	
AISFVGSNK	1	Unmodified	921.49198	0.4919813	2187	Q02252	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	31.957	31.228	2	0.00095536	26243	160511_QHF_FH_JSI10i_3	82.75	40.276			0.62952	0.67938	43.582	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43354	0.4992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91411	0.92459	NaN	1	1	Median	217260000	110460000	106800000	0	0	0	51997000	31206000	20791000	0	0	0	165260000	79254000	86010000	2715	2187	2559	16570;16571	22590;22591	22590			2	
AISGLEQDQPAR	0	Unmodified	1283.647	0.64697839	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			28.204	27.411	2	0.00037777	24345	160511_QHF_FH_JSI10i_1	70.977	48.891			1.6124	1.564	72.063	2	1	Median	1.1732	0.9396	NaN	1	1	Median	2.2162	2.6034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128190000	31071000	97117000	39833000	14554000	25279000	88356000	16518000	71838000	0	0	0	0	0	0	2716	498	2560	16572;16573	22592;22593	22592			2	
AISGVHTVR	0	Unmodified	938.52976	0.52976379	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.82	6.44			8					1	8	5	4	4	4	14.596	10.278	2;3	4.7075E-07	8919	160511_QHF_FH_JSI10i_3	116.3	92.876			0.97653	0.95484	14.53	17	0	Median	1.1519	0.90839	11.93	5	0	Median	0.76667	0.899	17.412	4	0	Median	1.0634	1.0341	19.653	4	0	Median	0.9077	0.96492	8.5575	4	0	Median	5581300000	2821900000	2759400000	2071900000	925870000	1146000000	1661900000	827160000	834720000	1055800000	592000000	463810000	791720000	476910000	314810000	2717	1508	2561	16574;16575;16576;16577;16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588;16589;16590	22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607;22608;22609;22610;22611;22612	22598			18	
AISHEHSPSDLEAHFVPLVK	1	Unmodified	2212.1277	0.12766671	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.91	0.287		1	10							1		4	6	61.503	61.273	3;4;5	2.9256E-43	52246	160511_QHF_FH_JSI12i_3	202.5	189.07			1.1305	1.0903	27.145	10	1	Median	2.0115	1.7452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97446	0.91701	12.851	4	0	Linear	1.1136	1.1156	29.218	5	1	Median	1864200000	922230000	941960000	14717000	2682300	12035000	0	0	0	437030000	230530000	206490000	1412400000	689010000	723430000	2718	1345	2562	16591;16592;16593;16594;16595;16596;16597;16598;16599;16600;16601	22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629;22630;22631;22632;22633	22622			19	
AISQGHQAFLLEGDSSSR	0	Unmodified	1901.9232	0.92315325	149	O00534	VWA5A	von Willebrand factor A domain-containing protein 5A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			45.561	44.006	3	0.0012678	36615	160511_QHF_FH_JSI10i_3	52.784	46.486			0.51117	0.58513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51117	0.58513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11449000	7794100	3654400	0	0	0	11449000	7794100	3654400	0	0	0	0	0	0	2719	149	2563	16602	22634	22634			1	
AISSDMYFGR	0	Unmodified	1145.5175	0.51754412	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	49.057	48.098	2	0.00038461	41490	160511_QHF_FH_JSI11i_2	76.221	8.2054			0.91657	0.97499	2.3457	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98409	0.9913	NaN	1	0	Median	0.85368	0.95895	NaN	1	0	Median	108000000	55086000	52911000	0	0	0	0	0	0	61441000	27675000	33766000	46556000	27411000	19145000	2720	4881	2564	16603;16604	22635	22635			1	
AISSIHSLWQVPYFSK	1	Unmodified	1861.9727	0.97266962	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			91.089	90	3	0.00020004	74901	160511_QHF_FH_JSI10i_3	61.444	55.006			0.84708	0.82855	27.924	2	0	Median	0.83502	0.68009	NaN	1	0	Median	0.85932	1.0094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45985000	26652000	19333000	20146000	10913000	9233300	25839000	15739000	10100000	0	0	0	0	0	0	2721	1716	2565	16605;16606	22636;22637;22638;22639;22640;22641	22636			6	
AISSSAISK	1	Unmodified	862.476	0.47599688	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		4.25	5.63	3						1			1	1	2		18.329	16.047	2	0.026164	13528	160511_QHF_FH_JSI10i_1	66.27	42.475			1.1317	1.0196	14.773	4	0	Median	1.2787	1.0456	NaN	1	0	Median	0.7543	0.88047	NaN	1	0	Median	1.1392	1.1178	16.549	2	0	Median	NaN	NaN	NaN	0	0	Median	530830000	239840000	290990000	137660000	49475000	88183000	196050000	107280000	88775000	197120000	83086000	114030000	0	0	0	2722	3553	2566	16607;16608;16609;16610	22642;22643;22644	22643			0	
AISSSAISR	0	Unmodified	890.48214	0.48214489	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	3	3	2	16.617	16.163	2	2.5603E-05	13335	160511_QHF_FH_JSI11i_3	104.44	58.757			0.97396	0.99417	13.367	9	0	Median	1.4121	1.203	NaN	1	0	Median	0.67195	0.81191	17.312	3	0	Plateau	1.0371	0.97756	7.0534	3	0	Median	0.9675	1.0336	5.5036	2	0	Median	1339800000	676640000	663160000	171960000	70871000	101090000	340410000	204220000	136190000	455530000	229590000	225940000	371890000	171950000	199940000	2723	2746	2567	16611;16612;16613;16614;16615;16616;16617;16618;16619	22645;22646;22647;22648;22649;22650;22651;22652;22653;22654;22655	22645			11	
AISSTEAVLNNR	0	Unmodified	1273.6626	0.66262845	2956;5220	Q5T8P6;Q9P2N5	RBM26;RBM27	RNA-binding protein 26;RNA-binding protein 27	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.09	2	5					1			1	2	2	3	35.577	33.33	2	1.7165E-76	28571	160511_QHF_FH_JSI11i_2	215.93	191.16			0.6334	0.72186	39.118	7	3	Median	0.99467	0.87204	NaN	1	1	Median	0.50287	0.60177	17.046	2	0	Median	1.4355	1.4104	NaN	1	1	Median	0.6334	0.72186	44.702	3	1	Median	444080000	255010000	189080000	103830000	56594000	47233000	184700000	112950000	71756000	9158700	3873200	5285500	146400000	81594000	64804000	2724	2956;5220	2568	16620;16621;16622;16623;16624;16625;16626;16627	22656;22657;22658;22659;22660;22661;22662;22663;22664;22665;22666;22667	22665			12	
AISSYFVSTMSSSIK	1	Unmodified	1606.7913	0.79125936	510	O75367	H2AFY	Core histone macro-H2A.1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			79.704	78.345	2	8.7428E-17	64441	160511_QHF_FH_JSI9i_3	125.22	91.992			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2725	510	2569	16628;16629	22668;22669	22669			2	
AISTICSLEKK	2	Acetyl (K)	1290.6853	0.68533773	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	1	2	59.787	49.016	2	4.1192E-07	27996	160513_QHF_FH_JSI11Kac_4	111.06	71.012			3.5944	3.8432	45.203	4	4	Median	NaN	NaN	NaN	0	0	Median	2.2988	2.7014	NaN	1	1	Median	5.4546	5.4677	NaN	1	1	Median	3.6471	3.9784	60.269	2	2	Median	18702000	2601500	16100000	0	0	0	6139900	1211700	4928200	3728000	557080	3170900	8833700	832750	8001000	2726	5351	2570	16630;16631;16632;16633	22670;22671;22672;22673	22671	3370		4	
AISTLLK	1	Unmodified	744.47454	0.47454032	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	40.286	38.921	2	0.031087	33244	160511_QHF_FH_JSI12i_2	51.787	14.142			0.86588	0.9883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86588	0.9883	NaN	1	0	Median	35229000	18592000	16637000	0	0	0	0	0	0	0	0	0	35229000	18592000	16637000	2727	2338	2571	16634	22674	22674			1	
AISVHSTPEGCSSACK	1	Unmodified	1689.7451	0.74505423	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	17.121	17.141	3	7.0916E-06	13793	160511_QHF_FH_JSI12i_3	100.43	89.371			1.4122	1.3947	29.257	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1722	1.134	NaN	1	0	Median	1.7014	1.7152	NaN	1	0	Median	117390000	53693000	63701000	0	0	0	0	0	0	62347000	30545000	31802000	55046000	23148000	31899000	2728	5153	2572	16635;16636	22675	22675			1	
AISVLAK	1	Unmodified	700.44833	0.44832557	2398	Q13404	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.36	3	4	7				2	3	4	4	6	7	6	37.399	33.21	2	0.00010483	24596	160511_QHF_FH_JSI12i_3	139.92	57.654			0.98735	0.97806	49.403	23	1	Median	1.1847	0.97584	106.63	4	0	Median	0.78829	0.93589	16.575	6	1	Median	1.1325	1.0687	18.681	7	0	Median	0.79325	0.87958	31.49	6	0	Median	10094000000	4697700000	5396700000	1194000000	565200000	628750000	1878900000	893730000	985180000	3097100000	1321000000	1776000000	3924500000	1917700000	2006800000	2729	2398	2573	16637;16638;16639;16640;16641;16642;16643;16644;16645;16646;16647;16648;16649;16650;16651;16652;16653;16654;16655;16656;16657;16658;16659	22676;22677;22678;22679;22680;22681;22682;22683;22684;22685;22686;22687;22688;22689;22690;22691;22692;22693;22694;22695;22696;22697;22698	22695			23	
AISYHLVQK	1	Unmodified	1057.592	0.59202969	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	4	5	4	4	34.111	29.413	2;3	7.2885E-09	23919	160511_QHF_FH_JSI9i_3	153.78	85.798			0.98734	0.94355	39.704	17	2	Median	0.99708	0.71137	21.092	4	0	Linear	0.72071	0.85851	54.778	5	1	Median	1.8195	1.7636	29.957	4	0	Linear	1.0168	1.0648	33.557	4	1	Median	2941100000	1277200000	1663900000	696520000	313150000	383370000	615140000	332340000	282800000	698140000	319710000	378430000	931250000	311980000	619270000	2730	3955	2574	16660;16661;16662;16663;16664;16665;16666;16667;16668;16669;16670;16671;16672;16673;16674;16675;16676	22699;22700;22701;22702;22703;22704;22705;22706;22707;22708;22709;22710;22711;22712;22713;22714;22715;22716;22717;22718;22719;22720;22721;22722;22723;22724	22711			24	
AITAGYFYHTAR	0	Unmodified	1369.6779	0.67788459	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	51.48	42.142	2;3	7.4653E-17	23127	160513_QHF_FH_JSI10Kac_6	146.71	111.91			1.0149	0.99062	8.587	8	0	Median	1.1368	0.97683	6.0836	2	0	Median	0.87706	1.0273	10.715	2	0	Median	1.178	1.1332	2.2185	2	0	Median	0.86674	0.95146	1.6011	2	0	Median	955300000	447860000	507440000	274190000	107620000	166570000	438340000	219130000	219210000	172400000	77672000	94730000	70356000	43432000	26924000	2731	398	2575	16677;16678;16679;16680;16681;16682;16683;16684	22725;22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736;22737;22738;22739	22738			15	
AITAMGFK	1	Unmodified	837.44186	0.44185998	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	42.599	41.838	2	0.011487	35928	160511_QHF_FH_JSI11i_2	53.754	27.645			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2732	4096	2576	16685;16686;16687;16688	22740;22741;22742;22743	22741			4	
AITDGQAGFGNDTLSK	1	Unmodified	1593.7635	0.76346471	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	45.88	45.204	2;3	6.6341E-82	41091	160511_QHF_FH_JSI12i_1	253.15	233.16			1.1371	1.1099	13.323	8	2	Median	1.1516	0.96119	10.328	2	0	Median	1.0211	1.2041	15.212	2	1	Median	1.2611	1.2186	9.5266	2	1	Median	1.0461	1.0858	9.1252	2	0	Median	748620000	355430000	393180000	141610000	54213000	87393000	168180000	82089000	86088000	188780000	81992000	106790000	250050000	137140000	112910000	2733	3291	2577	16689;16690;16691;16692;16693;16694;16695;16696;16697	22744;22745;22746;22747;22748;22749;22750;22751;22752;22753;22754	22745			9	
AITEASPAH	0	Unmodified	895.43995	0.43994572	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.8	5.88	3					2				1	1	2	1	13.963	10.84	2	0.0019711	7184	160513_QHF_FH_JSI11Kac_3	81.613	62.928			1.0116	0.98997	8.9002	5	0	Median	1.1027	0.90158	NaN	1	0	Median	0.78478	0.92612	NaN	1	0	Median	1.0645	1.0447	7.6072	2	0	Median	0.99289	1.0771	NaN	1	0	Median	519100000	267730000	251370000	127970000	68709000	59266000	172730000	95300000	77428000	214770000	101900000	112870000	3623200	1824400	1798700	2734	4773	2578	16698;16699;16700;16701;16702	22755;22756;22757;22758	22756			1	
AITEIYLTR	0	Unmodified	1078.6023	0.60226003	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1	1	1	1	1	63.049	52.702	2	0.00091896	26662	160513_QHF_FH_JSI10Kac_5	88.948	80.728			0.89145	0.99287	17.564	4	1	Median	1.2264	1.0647	NaN	1	0	Median	0.7814	0.92586	NaN	1	0	Median	0.763	0.75846	NaN	1	1	Median	1.017	1.1245	NaN	1	0	Median	50933000	27424000	23510000	10215000	4233500	5981400	14629000	6060000	8569000	16361000	10670000	5690900	9728100	6459900	3268200	2735	236	2579	16703;16704;16705;16706	22759;22760;22761	22760			3	
AITEPESPMK	1	Oxidation (M)	1117.5325	0.53252548	5805				yes	yes	0	0	1	0				By MS/MS	1	0	1												1	23.122	22.607	2	0.019694	19876	160511_QHF_FH_JSI12i_1	44.395	11.554	+		0.92853	0.9658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92853	0.9658	NaN	1	0	Median	167450000	82431000	85022000	0	0	0	0	0	0	0	0	0	167450000	82431000	85022000	2736	5805	2580	16707	22762	22762		2753	1	
AITFFTEDDKPLLR	1	Unmodified	1664.8774	0.87737225	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		76.859	76.366	3	3.0587E-05	68139	160511_QHF_FH_JSI11i_3	114.56	100.48			0.86454	0.75808	9.898	3	3	Median	0.86454	0.75808	NaN	1	1	Median	0.58107	0.72382	NaN	1	1	Median	0.93149	0.87512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	170670000	88128000	82546000	17760000	9176200	8584000	19478000	11707000	7770800	133440000	67245000	66191000	0	0	0	2737	5530	2581	16708;16709;16710	22763;22764;22765	22763			3	
AITFLQSATR	0	Unmodified	1106.6084	0.60840804	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	6.1		2	5						3	3	2	3	2	56.29	52.386	2	7.7619E-06	43031	160511_QHF_FH_JSI9i_3	116.3	63.138			1.1435	0.97747	40.057	9	4	Median	1.1935	0.97067	5.429	3	2	Plateau	0.76072	0.88195	24.283	2	2	Median	1.1089	1.0855	51.663	2	0	Median	1.4716	1.5438	77.467	2	0	Median	605020000	336400000	268620000	205740000	103720000	102020000	247730000	154140000	93590000	67108000	36396000	30712000	84437000	42139000	42298000	2738	1428	2582	16711;16712;16713;16714;16715;16716;16717;16718;16719;16720	22766;22767;22768;22769;22770;22771;22772;22773	22770			8	
AITGASLADIMAK	1	Oxidation (M)	1276.6697	0.66968766	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.08	4		3					3		3	2	3	2	55.838	53.916	2	3.3245E-05	47808	160511_QHF_FH_JSI11i_3	120.77	85.546			1.0001	1.0575	47.804	8	3	Plateau	1.0425	0.8649	15.084	2	0	Median	0.5918	0.69038	NaN	1	1	Median	1.0782	1.0206	77.655	3	1	Plateau	0.76377	0.774	52.031	2	1	Median	1022900000	547840000	475060000	154060000	73819000	80246000	136510000	82437000	54076000	389690000	222300000	167390000	342640000	169290000	173350000	2739	2120	2583	16721;16722;16723;16724;16725;16726;16727;16728;16729;16730	22774;22775;22776;22777;22778;22779;22780;22781;22782;22783;22784;22785	22775		1783	12	
AITGASLADIMAK	1	Unmodified	1260.6748	0.67477304	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.76	3.13	4	8	4					1		5	5	3	4	73.866	72.49	2;3	1.6665E-66	62774	160511_QHF_FH_JSI12i_2	230.65	189.67			1.1431	1.063	16.952	16	3	Median	1.2764	1.0757	7.7575	5	1	Median	0.84518	1.0072	17.376	4	1	Median	1.1688	1.1097	21.49	3	0	Median	1.1083	1.1435	17.561	4	1	Median	16087000000	7626400000	8460400000	2554900000	1159500000	1395400000	3985700000	2159800000	1825900000	3506100000	1632900000	1873200000	6040100000	2674200000	3365800000	2740	2120	2583	16731;16732;16733;16734;16735;16736;16737;16738;16739;16740;16741;16742;16743;16744;16745;16746;16747	22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827	22794			42	
AITGFDDPFSGK	1	Unmodified	1253.5928	0.59281755	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			3	3	2	3	70.101	66.373	2	7.2045E-16	60670	160511_QHF_FH_JSI10i_1	159.83	113.4			1.0259	1.0151	47.319	10	2	Median	1.0644	0.88207	10.843	2	1	Median	0.85803	1.0095	3.0393	3	0	Median	1.1628	1.1205	24.447	2	0	Median	1.1401	1.2329	76.528	3	1	Median	2229300000	986170000	1243200000	353650000	153480000	200160000	498100000	274980000	223120000	451480000	250360000	201120000	926100000	307350000	618750000	2741	1085	2584	16748;16749;16750;16751;16752;16753;16754;16755;16756;16757;16758	22828;22829;22830;22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845	22837			18	
AITGIQAFTASK	1	Unmodified	1206.6608	0.66083754	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.94			4					3		2	1	2	2	60.594	55.695	2	1.2355E-11	47634	160511_QHF_FH_JSI12i_3	202.03	141.27			0.88207	1.0182	43.535	7	6	Median	0.96642	0.79953	40.184	2	1	Median	0.88207	1.0182	NaN	1	1	Median	0.82031	0.79178	85.609	2	2	Median	1.0573	1.0846	31.172	2	2	Median	735470000	382330000	353140000	24565000	12711000	11854000	3193600	1698200	1495300	136040000	92355000	43686000	571670000	275570000	296110000	2742	3912	2585	16759;16760;16761;16762;16763;16764;16765	22846;22847;22848;22849;22850;22851;22852	22852			6	
AITHLNNNFMFGQK	1	Oxidation (M)	1649.7984	0.79841043	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							5	3	4	2	48.364	47.42	2;3	1.2114E-09	41550	160511_QHF_FH_JSI11i_3	147.91	127.04			0.91221	0.89036	65.807	14	5	Median	1.0124	0.83902	22.791	5	2	Median	0.77614	0.90936	10.856	3	0	Median	0.83751	0.78461	107.52	4	2	Median	0.44116	0.46117	91.523	2	1	Median	1976700000	1046700000	930070000	756060000	381350000	374710000	538370000	300220000	238150000	524720000	259790000	264930000	157600000	105320000	52277000	2743	1063	2586	16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779	22853;22854;22855;22856;22857;22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868;22869;22870;22871;22872;22873	22853		698	20	
AITHLNNNFMFGQK	1	Unmodified	1633.8035	0.8034958	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.55	4	4	8						4	5	5	5	5	58.1	55.654	2;3	1.0894E-65	49045	160511_QHF_FH_JSI11i_3	265.6	251.44			0.97379	0.95276	15.618	20	0	Median	1.1609	0.97131	12.188	5	0	Median	0.95096	1.148	10.54	5	0	Median	0.9614	0.92833	10.489	5	0	Median	0.86009	0.9019	25.256	5	0	Median	15256000000	6887200000	8368600000	3544200000	1209400000	2334800000	3546200000	1758700000	1787500000	4342600000	2041900000	2300700000	3822800000	1877200000	1945600000	2744	1063	2586	16780;16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799	22874;22875;22876;22877;22878;22879;22880;22881;22882;22883;22884;22885;22886;22887;22888;22889;22890;22891;22892;22893;22894;22895;22896;22897;22898;22899;22900;22901;22902;22903;22904;22905;22906;22907;22908;22909;22910;22911;22912;22913;22914;22915;22916;22917	22879			44	
AITHYYIETSDDK	1	Unmodified	1554.7202	0.72020291	3005	Q5W0V3	FAM160B1	Protein FAM160B1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	32.984	32.922	2;3	3.0266E-05	28567	160511_QHF_FH_JSI11i_3	68.277	63.124			0.76942	0.7871	46.017	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0644	0.95836	NaN	1	0	Median	0.54407	0.56019	48.094	2	1	Median	137290000	77869000	59418000	0	0	0	0	0	0	52411000	25852000	26558000	84876000	52017000	32859000	2745	3005	2587	16800;16801;16802	22918;22919;22920;22921	22919			4	
AITIAGIPQSIIECVK	1	Unmodified	1711.9542	0.95424237	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.725	5	8	4							2	3	6	6	100.78	100.69	2;3	5.8783E-40	89153	160511_QHF_FH_JSI10i_2	200.44	181.49			0.97425	0.99075	28.681	17	1	Median	1.091	0.9677	13.324	2	0	Median	0.8963	1.085	10.455	3	0	Plateau	0.81903	0.81816	16.369	6	1	Median	1.3868	1.4301	10.392	6	0	Median	2258300000	1120300000	1138100000	152900000	72191000	80705000	294060000	164240000	129820000	1009600000	527240000	482330000	801810000	356590000	445220000	2746	2657	2588	16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819	22922;22923;22924;22925;22926;22927;22928;22929;22930;22931;22932;22933;22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946	22939			24	
AITIAGVPQSVTECVK	1	Unmodified	1671.8866	0.88655673	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.746	8	3	2							3	5	3	2	70.071	69.394	2;3	1.9634E-07	61123	160511_QHF_FH_JSI9i_2	131.69	115.44			0.82286	0.88007	22.373	12	3	Median	1.0509	0.87206	20.737	3	1	Median	0.8027	0.94744	5.9621	4	1	Median	0.82779	0.80958	14.464	3	1	Plateau	1.1855	1.2561	6.0325	2	0	Median	2091200000	1011900000	1079300000	251510000	113430000	138090000	651420000	338100000	313330000	615270000	315890000	299390000	572940000	244480000	328470000	2747	2656	2589	16820;16821;16822;16823;16824;16825;16826;16827;16828;16829;16830;16831;16832	22947;22948;22949;22950;22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961;22962;22963;22964;22965;22966;22967;22968;22969;22970	22966			24	
AITIANQTNCPLYITK	1	Unmodified	1819.9502	0.95021962	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		66.439	66.054	2	9.4787E-19	60055	160511_QHF_FH_JSI11i_1	205.72	184.93			0.63867	0.67074	16.663	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66952	0.75462	NaN	1	1	Median	0.60923	0.59619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77701000	51349000	26352000	0	0	0	33849000	21909000	11940000	43852000	29440000	14412000	0	0	0	2748	2739	2590	16833;16834;16835	22971;22972;22973	22971			3	
AITSAYYR	0	Unmodified	943.47633	0.47633123	2722;2009	P62491;P57735;Q15907	RAB11A;RAB25;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-25;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	27.404	23.544	2	3.1943E-07	13114	160513_QHF_FH_JSI11Kac_6	143.85	108.36			1.0088	1.0318	8.169	10	0	Median	1.2343	1.0628	2.1024	2	0	Median	0.8918	1.0748	7.8659	2	0	Median	0.97417	0.94581	3.4274	3	0	Median	1.1434	1.1699	10.243	3	0	Plateau	3542900000	1633200000	1909700000	401720000	197310000	204400000	552700000	272130000	280570000	1234500000	576040000	658420000	1354000000	587750000	766290000	2749	2009;2722	2591	16836;16837;16838;16839;16840;16841;16842;16843;16844;16845	22974;22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988	22976			15	
AITTGLQEYVEAVSFQHFIK	1	Unmodified	2280.179	0.17903358	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	3	4	3	97.536	94.195	3	3.1192E-100	87831	160511_QHF_FH_JSI12i_3	260.05	245.88			1.0248	1.0347	10.531	13	4	Median	1.0858	0.92969	8.4345	3	0	Plateau	0.8398	0.9647	8.0999	3	2	Median	1.0371	1.0092	9.2313	4	2	Median	1.0025	1.0817	12.073	3	0	Median	5558700000	2750800000	2807900000	606280000	291580000	314690000	616690000	325320000	291370000	1706400000	836680000	869750000	2629300000	1297200000	1332000000	2750	4292	2592	16846;16847;16848;16849;16850;16851;16852;16853;16854;16855;16856;16857;16858	22989;22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001	22997			13	
AITTQNVNTK	1	Unmodified	1088.5826	0.58258722	2124	P84022	SMAD3	Mothers against decapentaplegic homolog 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.497	13.529	2	0.0092299	10850	160511_QHF_FH_JSI9i_1	58.955	48.09			2.9858	2.4315	NaN	1	1	Median	2.9858	2.4315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13835000	2451500	11384000	13835000	2451500	11384000	0	0	0	0	0	0	0	0	0	2751	2124	2593	16859	23002	23002			1	
AITTSLTTK	1	Unmodified	934.53351	0.53351176	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.38	4.06	2	4	1				1			1	2	3	2	28.452	26.527	2	0.00017136	22238	160511_QHF_FH_JSI11i_2	87.476	45.974			1.0301	1.1277	25.5	7	1	Median	1.0301	0.8983	NaN	1	0	Median	1.103	1.3341	21.3	2	0	Median	1.1001	1.1277	26.419	3	0	Median	0.73806	0.81375	NaN	1	1	Median	429570000	202640000	226930000	57090000	26300000	30790000	134610000	65286000	69327000	178450000	82037000	96414000	59418000	29021000	30397000	2752	5135	2594	16860;16861;16862;16863;16864;16865;16866;16867	23003;23004;23005;23006;23007	23005			5	
AITVFSPDGHLFQVEYAQEAVK	1	Unmodified	2448.2325	0.23252572	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		8	10						4	4	4	7	7	90.374	88.419	2;3;4	5.9481E-103	78890	160511_QHF_FH_JSI12i_2	261.78	253.98			1.0084	1.0239	20.72	20	3	Median	1.0785	0.88712	14.284	3	0	Median	0.85294	1.0239	24.481	4	0	Median	1.0881	1.0181	24.962	6	1	Median	1.0124	1.0484	19.858	7	2	Median	7326200000	3649800000	3676400000	736030000	376260000	359770000	1014800000	549160000	465660000	2245700000	1023400000	1222300000	3329600000	1701000000	1628600000	2753	209	2595	16868;16869;16870;16871;16872;16873;16874;16875;16876;16877;16878;16879;16880;16881;16882;16883;16884;16885;16886;16887;16888;16889	23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044;23045;23046;23047;23048;23049;23050;23051	23016			44	
AITVFSPDGHLFQVEYAQEAVKK	2	Unmodified	2576.3275	0.32748873	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							4	5	2	2	84.331	83.683	3;4	2.0828E-87	74732	160511_QHF_FH_JSI11i_3	243.48	201.17			0.86397	0.87798	13.369	10	4	Median	0.9213	0.78159	33.291	2	1	Median	0.76416	0.89512	6.2102	4	3	Median	0.87493	0.81631	1.4696	2	0	Median	0.8852	0.88573	0.4073	2	0	Median	2518300000	1357800000	1160500000	94165000	42274000	51891000	604640000	332860000	271780000	852780000	459690000	393090000	966680000	522970000	443710000	2754	209	2596	16890;16891;16892;16893;16894;16895;16896;16897;16898;16899;16900;16901;16902	23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072;23073;23074;23075;23076;23077	23053			26	
AITYNAMLAETSTVFHQNDVK	1	Unmodified	2352.142	0.14199615	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	84.33	80.956	3	3.6124E-89	40154	160513_QHF_FH_JSI9Kac_6	223.97	198.77			1.0521	1.0659	10.867	11	0	Median	1.3696	1.1827	3.3044	2	0	Median	0.88932	1.043	5.1127	3	0	Plateau	1.096	1.0626	5.8921	3	0	Median	1.0521	1.0659	18.094	3	0	Plateau	2196700000	1067700000	1129000000	243710000	115280000	128430000	520290000	280550000	239740000	691190000	321640000	369550000	741510000	350250000	391260000	2755	4438	2597	16903;16904;16905;16906;16907;16908;16909;16910;16911;16912;16913	23078;23079;23080;23081;23082;23083;23084;23085;23086;23087;23088;23089;23090;23091;23092;23093;23094;23095;23096;23097	23093			20	
AIVAESLNNTSIK	1	Unmodified	1358.7405	0.74054442	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			1	3	3	2	49.674	46.673	2	9.4709E-11	40187	160511_QHF_FH_JSI11i_2	152.54	105.65			1.0218	1.0273	14.393	9	1	Median	1.1429	1.0273	NaN	1	0	Median	0.85297	0.9912	6.8449	3	1	Median	1.0237	1.0658	2.0223	3	0	Median	1.1831	1.2345	27.98	2	0	Median	324110000	149280000	174830000	36265000	11248000	25017000	96585000	52747000	43838000	118220000	48902000	69321000	73033000	36380000	36653000	2756	1430	2598	16914;16915;16916;16917;16918;16919;16920;16921;16922	23098;23099;23100;23101;23102;23103;23104;23105;23106;23107;23108	23107			10	
AIVAIENPADVSVISSR	0	Unmodified	1739.9418	0.94176342	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.32	4.01	9	8	8				1	2		8	8	7	5	77.017	75.511	2;3	1.0477E-41	67162	160511_QHF_FH_JSI9i_2	250.8	236.35			1.0115	1.0355	5.328	25	2	Median	1.2748	1.0523	4.8849	6	0	Median	0.90931	1.0675	7.6561	7	1	Median	1.0461	1.0134	2.1387	7	1	Median	0.97413	1.0355	2.8152	5	0	Median	12003000000	5946900000	6055700000	2259700000	1021100000	1238600000	3223100000	1686000000	1537100000	3254200000	1649500000	1604600000	3265500000	1590200000	1675300000	2757	917	2599	16923;16924;16925;16926;16927;16928;16929;16930;16931;16932;16933;16934;16935;16936;16937;16938;16939;16940;16941;16942;16943;16944;16945;16946;16947;16948;16949;16950	23109;23110;23111;23112;23113;23114;23115;23116;23117;23118;23119;23120;23121;23122;23123;23124;23125;23126;23127;23128;23129;23130;23131;23132;23133;23134;23135;23136;23137;23138;23139;23140;23141;23142;23143;23144;23145;23146;23147;23148;23149;23150;23151;23152;23153;23154;23155;23156;23157;23158;23159;23160;23161;23162;23163	23149			55	
AIVAIENPADVSVISSRNTGQR	0	Unmodified	2296.2135	0.21352161	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				67.26	65.768	3	1.1002E-05	53882	160511_QHF_FH_JSI9i_3	77.023	58.966			1.7513	1.4743	NaN	1	1	Median	1.7513	1.4743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12118000	3574500	8543900	12118000	3574500	8543900	0	0	0	0	0	0	0	0	0	2758	917	2600	16951	23164	23164			1	
AIVDAAR	0	Unmodified	714.40244	0.40243801	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.575	12.445	2	0.0079954	10039	160511_QHF_FH_JSI11i_1	85.359	38.439			1.0835	1.0709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0835	1.0709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	230420000	119510000	110920000	0	0	0	0	0	0	230420000	119510000	110920000	0	0	0	2759	2502	2601	16952	23165	23165			1	
AIVDALPPPCESACTVPTDVDK	1	Unmodified	2354.1134	0.11339814	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	70.539	69.899	3	5.1712E-08	63539	160511_QHF_FH_JSI11i_1	87.156	83.049			0.94838	0.97613	35.864	3	1	Plateau	0.68475	0.56361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80833	0.77268	NaN	1	0	Median	1.1127	1.1528	NaN	1	0	Median	91714000	51388000	40326000	24062000	14690000	9372600	0	0	0	32490000	16525000	15965000	35161000	20173000	14989000	2760	2641	2602	16953;16954;16955;16956	23166;23167;23168;23169	23166			4	
AIVDGNLK	1	Unmodified	828.47052	0.47051757	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	25.01	24.366	2	0.0043669	21256	160511_QHF_FH_JSI11i_1	68.915	27.413			1.0414	1.0656	12.702	7	0	Median	1.1658	0.97335	12.8	2	0	Median	0.97875	1.1708	11.297	2	0	Median	1.1416	1.1239	16.216	2	0	Median	0.95606	1.0168	NaN	1	0	Median	3307200000	1720900000	1586200000	759590000	389050000	370540000	692490000	398980000	293510000	898160000	407200000	490950000	956920000	525700000	431210000	2761	1192;512;2527	2603	16957;16958;16959;16960;16961;16962;16963	23170;23171;23172;23173;23174;23175;23176;23177;23178;23179;23180;23181	23171			12	
AIVDSGTTLLR	0	Unmodified	1144.6452	0.64518747	5691	Q9Y5Z0	BACE2	Beta-secretase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.201	50.808	2	0.010537	43489	160511_QHF_FH_JSI12i_2	47.198	22.275			0.78623	0.8714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78623	0.8714	NaN	1	0	Median	27610000	13098000	14512000	0	0	0	0	0	0	0	0	0	27610000	13098000	14512000	2762	5691	2604	16964;16965	23182;23183	23182			2	
AIVEFLSNLAR	0	Unmodified	1231.6925	0.69247202	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			91.095	90.007	2	3.3446E-05	73721	160511_QHF_FH_JSI9i_3	98.249	63.996			0.91165	0.89947	27.429	2	1	Median	0.89549	0.74089	NaN	1	0	Median	0.9281	1.092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45754000	24541000	21212000	28276000	15382000	12894000	17478000	9159100	8318800	0	0	0	0	0	0	2763	2352	2605	16966;16967	23184;23185;23186	23186			3	
AIVEKLR	1	Acetyl (K)	869.53345	0.53345218	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	1	2	45.628	35.593	2	0.019321	20112	160513_QHF_FH_JSI11Kac_5	77.282	12.525			0.77354	0.84407	16.995	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81514	0.96827	NaN	1	0	Median	0.65588	0.64529	NaN	1	0	Median	0.77354	0.84407	0.07656	2	0	Median	121370000	72218000	49156000	0	0	0	15641000	8093900	7547300	83442000	51585000	31857000	22291000	12539000	9751700	2764	1023	2606	16968;16969;16970;16971	23187;23188;23189	23187	839		3	
AIVFVVDSAAFQR	0	Unmodified	1421.7667	0.76669959	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.7		6	2						5	3	2	4	4	82.578	78.999	2;3	6.4826E-92	41835	160513_QHF_FH_JSI10Kac_6	250.06	215.53			1.0585	1.0526	29.827	13	3	Median	1.6004	1.3698	33.598	3	1	Median	0.7653	0.90822	1.1089	2	0	Median	1.2085	1.1433	40.496	4	2	Median	0.87192	0.96291	16.226	4	0	Median	1056000000	500850000	555190000	243660000	99970000	143690000	251710000	132400000	119310000	280330000	137590000	142740000	280350000	130890000	149460000	2765	5669	2607	16972;16973;16974;16975;16976;16977;16978;16979;16980;16981;16982;16983;16984	23190;23191;23192;23193;23194;23195;23196;23197;23198;23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209	23209			20	
AIVHAVGQELQVTGPFNLQLIAK	1	Unmodified	2445.3744	0.37437935	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	99.97	99.88	3	3.0938E-24	86348	160511_QHF_FH_JSI12i_3	161.22	154.45			0.97327	0.89394	14.998	4	1	Median	0.98161	0.80124	NaN	1	0	Median	0.68888	0.76202	NaN	1	1	Median	1.1213	1.023	NaN	1	0	Median	0.96499	0.99735	NaN	1	0	Median	210220000	112470000	97745000	29186000	16507000	12679000	30338000	17983000	12355000	51743000	23031000	28712000	98951000	54952000	43999000	2766	1296	2608	16985;16986;16987;16988	23210;23211;23212;23213;23214;23215;23216;23217	23217			8	
AIVIDPK	1	Unmodified	754.45889	0.45889025	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	31.538	31.085	2	0.01496	27969	160511_QHF_FH_JSI12i_1	64.776	8.2662			0.84512	0.91574	40.345	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61085	0.68846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1692	1.2181	NaN	1	1	Median	54337000	31649000	22688000	0	0	0	30492000	18711000	11781000	0	0	0	23845000	12938000	10907000	2767	1347	2609	16989;16990	23218;23219	23218			2	
AIVLAAIFR	0	Unmodified	972.61204	0.61203685	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.93	76.681	2	3.7589E-05	43514	160513_QHF_FH_JSI10Kac_6	138.25	113.61			1.1179	1.1276	7.5103	4	0	Median	1.239	1.071	NaN	1	0	Median	1.0087	1.1836	NaN	1	0	Median	1.3399	1.2473	NaN	1	0	Median	1.0035	1.0742	NaN	1	0	Median	439950000	200370000	239580000	114460000	46764000	67696000	235280000	116020000	119260000	62184000	26371000	35812000	28025000	11209000	16816000	2768	3221	2610	16991;16992;16993;16994	23220;23221;23222;23223;23224	23223			5	
AIVLFSPDHPGLTSTSQIEK	1	Unmodified	2139.1212	0.12118435	1642	P49116	NR2C2	Nuclear receptor subfamily 2 group C member 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.795	72.5	3	4.6267E-08	62895	160511_QHF_FH_JSI12i_3	99.021	64.745			0.82788	0.85893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82788	0.85893	NaN	1	0	Median	39936000	21060000	18876000	0	0	0	0	0	0	0	0	0	39936000	21060000	18876000	2769	1642	2611	16995	23225	23225			1	
AIVNSRFEDSK	1	Unmodified	1264.6412	0.64116473	5795				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	61.032	60.191	2	0.0011741	52257	160511_QHF_FH_JSI11i_2	82.452	28.485	+		0.98774	1.0128	2.4878	9	0	Plateau	1.179	1.0051	0	2	0	Median	0.79887	0.97198	0	2	0	Median	0.99809	1.001	0	2	0	Median	0.98774	1.0128	3.6455	3	0	Plateau	2371400000	1197600000	1173800000	506890000	230330000	276560000	494910000	242020000	252890000	489650000	285160000	204490000	879990000	440100000	439890000	2770	5795	2612	16996;16997;16998;16999;17000;17001;17002;17003;17004	23226;23227;23228;23229	23228			4	
AIVNVIGMHK	1	Unmodified	1080.6114	0.61138492	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	48.506	43.727	2;3	1.7919E-11	36461	160511_QHF_FH_JSI10i_3	152.63	114.9			1.0812	0.99378	12.555	15	0	Median	1.1068	0.90169	1.6513	4	0	Median	0.84677	0.99474	13.493	4	0	Median	1.103	1.0496	3.2425	4	0	Median	0.80961	0.81512	21.066	3	0	Plateau	6316300000	2987200000	3329100000	1438400000	744090000	694270000	1461200000	698460000	762710000	1480900000	632220000	848660000	1935900000	912410000	1023500000	2771	542	2613	17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020	23230;23231;23232;23233;23234;23235;23236;23237;23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252;23253;23254;23255;23256	23237			27	
AIVNVIGMHK	1	Oxidation (M)	1096.6063	0.60629955	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS			7.33	6.13			4						2	4	2			35.126	31.166	2;3	0.00014608	25921	160511_QHF_FH_JSI10i_3	85.064	72.708			1.1621	1.0865	21.646	6	1	Median	1.3464	1.0865	26.932	4	1	Median	0.9671	1.1034	12.413	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	500680000	224400000	276280000	321170000	142040000	179130000	179510000	82358000	97150000	0	0	0	0	0	0	2772	542	2613	17021;17022;17023;17024;17025;17026	23257;23258;23259;23260;23261;23262;23263;23264	23258		199	8	
AIVPILLDANVSTYDK	1	Unmodified	1730.9455	0.94545182	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.293	94.971	2	4.082E-05	84089	160511_QHF_FH_JSI10i_2	98.803	64.917			1.0169	1.0998	14.435	4	0	Median	1.2188	1.0504	NaN	1	0	Median	0.98732	1.268	NaN	1	0	Median	0.91676	0.90323	NaN	1	0	Median	1.0474	1.1515	NaN	1	0	Median	48690000	26789000	21901000	11131000	5771300	5359900	12974000	7875400	5099000	12385000	7911700	4473300	12199000	5230900	6968300	2773	1962	2614	17027;17028;17029;17030	23265;23266;23267;23268;23269;23270	23270			6	
AIVPLEAR	0	Unmodified	867.5178	0.51780212	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	40.624	39.864	2	0.0019709	35731	160511_QHF_FH_JSI11i_1	83.614	42.694			1.1188	1.173	10.943	6	0	Median	1.4341	1.2304	NaN	1	0	Median	1.0438	1.2504	15.788	2	0	Median	1.0743	1.0676	6.2504	2	0	Median	1.1104	1.2412	NaN	1	0	Median	616490000	298060000	318430000	109120000	48235000	60885000	154430000	75457000	78971000	229850000	115740000	114110000	123100000	58627000	64468000	2774	203	2615	17031;17032;17033;17034;17035;17036	23271;23272;23273;23274;23275;23276;23277	23271			7	
AIVPQALSGIIK	1	Unmodified	1208.7493	0.74925861	5522	Q9Y2K7	KDM2A	Lysine-specific demethylase 2A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	83.032	82.522	2	0.00024954	73547	160511_QHF_FH_JSI11i_3	77.379	61.241			1.2359	1.3384	14.334	5	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86661	1.0906	NaN	1	0	Median	1.3164	1.2541	6.4168	2	0	Median	1.0722	1.1437	25.015	2	0	Median	139400000	64000000	75405000	0	0	0	11435000	5865400	5569900	60805000	24170000	36635000	67165000	33964000	33200000	2775	5522	2616	17037;17038;17039;17040;17041	23278;23279;23280;23281;23282;23283	23279			6	
AIVQLVNER	0	Unmodified	1040.5978	0.59784335	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	43.007	42.172	2	1.2638E-16	35966	160511_QHF_FH_JSI12i_3	178.83	64.228			0.9678	0.98891	18.668	7	0	Median	1.6486	1.389	11.755	2	0	Median	0.86009	1.027	6.5209	2	0	Median	1.0093	0.9848	0.5899	2	0	Median	0.87479	0.87933	NaN	1	0	Median	2771500000	1430700000	1340800000	370130000	144490000	225640000	460410000	245680000	214730000	1137700000	602830000	534880000	803280000	437730000	365550000	2776	2629	2617	17042;17043;17044;17045;17046;17047;17048	23284;23285;23286;23287;23288;23289;23290;23291	23291			8	
AIVQQWLEYR	0	Unmodified	1304.6877	0.68772099	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	1	2		1	71.702	69.298	2	4.3288E-14	37374	160513_QHF_FH_JSI10Kac_6	179.51	109.68			1.0105	1.1426	20.946	4	2	Median	1.4018	1.1271	NaN	1	0	Median	1.0105	1.165	0.80139	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74231	0.75883	NaN	1	1	Median	1210300000	605210000	605100000	270450000	123690000	146760000	682640000	323400000	359240000	0	0	0	257220000	158120000	99103000	2777	323	2618	17049;17050;17051;17052	23292;23293;23294;23295	23295			3	
AIVSSGTLGDR	0	Unmodified	1074.5669	0.56693715	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		11	5.72			1				1		1		1	2		45.008	39.324	2	0.0089309	17009	160513_QHF_FH_JSI11Kac_4	55.549	30.627			0.97305	1.0076	7.446	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81922	0.99049	NaN	1	0	Median	1.1666	1.091	6.973	2	1	Median	NaN	NaN	NaN	0	0	Median	66081000	29169000	36912000	0	0	0	21648000	10368000	11280000	44433000	18801000	25632000	0	0	0	2778	2213	2619	17053;17054;17055	23296;23297;23298;23299	23298			4	
AIVVDPVHGFMYWTDWGTPAK	1	Unmodified	2389.1565	0.156524	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.194	85.82	3	1.0941E-125	48119	160513_QHF_FH_JSI11Kac_6	253.2	221.11			1	1.0701	8.3852	4	0	Median	1.2467	1.0847	NaN	1	0	Median	0.99138	1.1736	NaN	1	0	Median	0.99986	0.95782	NaN	1	0	Median	1.0002	1.0556	NaN	1	0	Median	1584100000	742940000	841160000	268290000	122010000	146280000	389220000	180210000	209010000	485230000	228960000	256270000	441360000	211760000	229600000	2779	787	2620	17056;17057;17058;17059	23300;23301;23302;23303;23304;23305;23306;23307	23301			8	
AIVVDPVHGFMYWTDWGTPAK	1	Oxidation (M)	2405.1514	0.15143862	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									3	2			1	90.478	81.399	3	8.2628E-29	43756	160513_QHF_FH_JSI12Kac_6	155.49	131.93			0.91504	0.87312	22.614	2	0	Median	0.87853	0.74409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95306	1.0245	NaN	1	0	Median	124170000	68327000	55848000	32614000	17294000	15320000	0	0	0	0	0	0	91561000	51033000	40528000	2780	787	2620	17060;17061;17062	23308;23309;23310	23309		300	3	
AIVVTDGER	0	Unmodified	958.50836	0.50835964	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	22.988	20.884	2	2.9829E-05	18365	160511_QHF_FH_JSI12i_1	102.51	75.552			1.0605	1.0416	15.23	5	0	Median	1.4018	1.157	NaN	1	0	Median	0.7198	0.84136	NaN	1	0	Median	1.0046	0.99213	6.882	2	0	Median	1.1581	1.2277	NaN	1	0	Median	692360000	313270000	379090000	155350000	58987000	96367000	140300000	71509000	68786000	188470000	84787000	103690000	208240000	97989000	110250000	2781	1616	2621	17063;17064;17065;17066;17067	23311;23312;23313;23314;23315;23316	23312			6	
AIVWGMQTR	0	Unmodified	1060.5488	0.54878467	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.54	6.39		2	4				1	2	4	4	5	2	2	55.442	49.701	2	1.379E-16	27307	160513_QHF_FH_JSI10Kac_6	168.23	118.19			1.0559	1.018	13.393	13	2	Median	1.3357	1.1069	11.207	4	1	Median	0.84978	0.99843	15.403	5	1	Median	1.0909	1.0448	3.6785	2	0	Median	0.83408	0.8729	1.6767	2	0	Median	3614300000	1842000000	1772300000	1247900000	559470000	688410000	1254500000	710010000	544500000	670140000	315570000	354580000	441770000	256920000	184850000	2782	1798	2622	17068;17069;17070;17071;17072;17073;17074;17075;17076;17077;17078;17079;17080	23317;23318;23319;23320;23321;23322;23323;23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338	23338			22	
AIVWGMQTR	0	Oxidation (M)	1076.5437	0.54369929	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.02			2					4	4	3	3	2	2	42.105	34.083	2	0.00018682	18234	160513_QHF_FH_JSI9Kac_6	102.51	73.138			1.0515	1.0616	9.9775	10	0	Median	1.3128	1.1421	1.6429	3	0	Plateau	0.81647	0.94194	18.85	3	0	Plateau	1.0515	1.0345	4.6527	2	0	Median	0.92789	1.0246	4.0198	2	0	Median	493540000	244630000	248920000	236160000	99542000	136610000	190260000	111100000	79160000	36281000	18786000	17495000	30845000	15197000	15648000	2783	1798	2622	17081;17082;17083;17084;17085;17086;17087;17088;17089;17090	23339;23340;23341;23342;23343;23344;23345;23346;23347;23348;23349;23350;23351;23352;23353;23354	23350		1473	16	
AIWAALQTQTSNAAK	1	Unmodified	1572.826	0.82600539	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	3	4	3	3	63.083	59.196	2;3	1.1665E-97	50937	160511_QHF_FH_JSI12i_3	254.53	234.54			0.96282	1.029	17.702	13	2	Median	1.0947	0.87594	20.134	3	0	Plateau	0.67724	0.76083	28.416	4	0	Linear	1.1903	1.1316	6.2192	3	1	Plateau	0.93624	0.94718	5.4514	3	1	Plateau	1163500000	562230000	601250000	255140000	116720000	138420000	275910000	139480000	136430000	440680000	215570000	225110000	191760000	90469000	101290000	2784	5135	2623	17091;17092;17093;17094;17095;17096;17097;17098;17099;17100;17101;17102;17103	23355;23356;23357;23358;23359;23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370;23371;23372;23373	23368			19	
AIWGYCDQLK	1	Unmodified	1252.591	0.59104341	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	58.002	56.982	2	1.3914E-05	48902	160511_QHF_FH_JSI12i_2	112.84	99.072			1.1741	1.3673	19.121	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2375	1.4761	NaN	1	0	Median	1.0087	1.0024	NaN	1	0	Median	1.2262	1.3894	13.09	2	2	Median	271770000	125240000	146530000	0	0	0	50493000	21525000	28968000	87805000	46906000	40899000	133470000	56807000	76666000	2785	4193	2624	17104;17105;17106;17107	23374;23375;23376;23377;23378	23375			5	
AIWHAFTALDQDHSGK	1	Unmodified	1795.8642	0.86418181	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	1	2		59.448	57.002	3;4	0.0024256	50107	160511_QHF_FH_JSI11i_3	54.004	42.734			1.3657	1.1747	18.304	4	3	Median	1.4634	1.1853	NaN	1	1	Median	0.73922	0.88913	NaN	1	0	Median	1.3859	1.268	12.072	2	2	Median	NaN	NaN	NaN	0	0	Median	115580000	50393000	65188000	18410000	7757500	10653000	20131000	8518700	11613000	77040000	34117000	42922000	0	0	0	2786	5289	2625	17108;17109;17110;17111	23379;23380;23381;23382	23380			3	
AIWNVINWENVTER	0	Unmodified	1742.874	0.87401821	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.5		1	3						6	2	5	1	2	90.811	85.286	2	1.3971E-23	43764	160513_QHF_FH_JSI9Kac_6	147.33	111.37			0.93489	0.99308	24.761	9	5	Median	1.5917	1.3344	50.298	2	0	Median	0.89773	1.0578	14.174	4	3	Median	1.2051	1.1845	NaN	1	1	Median	0.85053	0.89296	3.5133	2	1	Median	1164900000	639560000	525360000	74627000	30751000	43876000	393300000	232650000	160650000	39010000	17563000	21448000	657980000	358590000	299390000	2787	807	2626	17112;17113;17114;17115;17116;17117;17118;17119;17120;17121	23383;23384;23385;23386;23387;23388;23389;23390;23391;23392;23393;23394;23395;23396	23392			14	
AIWNYIHCMFGIR	0	Unmodified	1679.8065	0.80647269	5746	Q9Y6P5	SESN1	Sestrin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.528	82.809	3	0.0002449	46855	160513_QHF_FH_JSI10Kac_6	62.088	51.272			0.88586	1.025	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88586	1.025	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52162000	27012000	25150000	0	0	0	52162000	27012000	25150000	0	0	0	0	0	0	2788	5746	2627	17122	23397	23397			1	
AIYAALSGNLK	1	Unmodified	1119.6288	0.62880913	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.942	53.705	2	9.744E-05	29626	160513_QHF_FH_JSI10Kac_6	96.331	58.029			0.9623	0.97256	13.313	4	2	Median	1.0167	0.88141	NaN	1	0	Median	0.93386	1.0817	NaN	1	1	Median	0.84687	0.83573	NaN	1	0	Median	0.99162	1.0731	NaN	1	1	Median	56216000	31594000	24622000	10477000	6806000	3670800	16053000	8050200	8003200	24572000	14248000	10324000	5114000	2489700	2624300	2789	1895	2628	17123;17124;17125;17126	23398;23399;23400;23401	23401			4	
AIYAYALQVFPSK	1	Unmodified	1469.7919	0.79185171	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.61	6.62		3	7						8	6	4	3	5	85.337	81.276	2;3	1.549E-62	41366	160513_QHF_FH_JSI11Kac_6	219.5	160.43			1.0175	1.0467	12.216	18	3	Median	1.2679	1.0941	16.67	6	3	Median	0.87708	1.0465	7.4731	4	0	Median	0.96212	0.91478	12.461	3	0	Plateau	1.0034	1.0466	9.851	5	0	Median	1868200000	922130000	946040000	584450000	255410000	329040000	505550000	274560000	230990000	511890000	263580000	248310000	266270000	128580000	137700000	2790	623	2629	17127;17128;17129;17130;17131;17132;17133;17134;17135;17136;17137;17138;17139;17140;17141;17142;17143;17144	23402;23403;23404;23405;23406;23407;23408;23409;23410;23411;23412;23413;23414;23415;23416;23417;23418;23419;23420;23421;23422;23423;23424;23425;23426	23406			24	
AIYAYALQVFPSKK	2	Unmodified	1597.8868	0.88681473	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	76.466	71.683	3	4.9684E-17	37838	160513_QHF_FH_JSI11Kac_6	134.68	115.85			0.98046	0.90106	9.8148	9	2	Median	1.0512	0.87478	4.1856	2	0	Median	0.73228	0.85402	14.156	3	2	Median	0.96674	0.90161	6.6067	2	0	Median	0.98134	1.029	0.90042	2	0	Median	1329600000	708210000	621380000	245870000	109630000	136230000	728560000	430920000	297650000	216830000	109870000	106950000	138330000	57782000	80550000	2791	623	2630	17145;17146;17147;17148;17149;17150;17151;17152;17153	23427;23428;23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439	23430			13	
AIYDFEAAEDNELTFK	1	Unmodified	1874.8574	0.85742467	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.766	82.404	2	1.3528E-07	75075	160511_QHF_FH_JSI11i_1	132.59	116.33			0.80574	0.77542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80574	0.77542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12046000	8041000	4005000	0	0	0	0	0	0	12046000	8041000	4005000	0	0	0	2792	3883	2631	17154	23440	23440			1	
AIYDIYGK	1	Unmodified	941.48583	0.48583328	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1.25	0.433	3	1								2	1		1	45.059	44.224	2	0.011872	40291	160511_QHF_FH_JSI12i_1	60.682	29.392			1.2215	1.1502	17.009	4	0	Median	1.566	1.3416	17.158	2	0	Median	0.87171	1.0184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0393	1.1133	NaN	1	0	Median	286540000	144620000	141920000	103060000	39368000	63696000	91597000	56742000	34855000	0	0	0	91876000	48509000	43367000	2793	5032	2632	17155;17156;17157;17158	23441	23441			1	
AIYDTPCIQAESEK	1	Unmodified	1623.745	0.74503745	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.641	45.963	2	3.7262E-17	41308	160511_QHF_FH_JSI10i_1	134.13	112.76			1.1954	1.1587	18.507	4	0	Median	1.3619	1.1094	NaN	1	0	Median	1.2197	1.4272	NaN	1	0	Median	0.94003	0.91506	NaN	1	0	Median	1.1716	1.2103	NaN	1	0	Median	291840000	147420000	144430000	38583000	19032000	19551000	92295000	43623000	48672000	86853000	48573000	38280000	74112000	36189000	37923000	2794	110	2633	17159;17160;17161;17162;17163	23442;23443;23444;23445;23446;23447;23448;23449	23448			8	
AIYELAISQPR	0	Unmodified	1259.6874	0.68738664	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.497								5	4	3	3	1	2	38.419	29.163	2;3	0.00029592	30709	160513_QHF_FH_JSI9Kac_5	91.584	59.363			0.95106	1.0532	21.607	7	0	Median	1.7121	1.4205	NaN	1	0	Median	0.89743	1.0765	11.203	3	0	Median	0.7005	0.69791	NaN	1	0	Median	0.95855	1.0448	1.1352	2	0	Median	65739000	34919000	30819000	5327200	2468100	2859100	42182000	21898000	20285000	4190600	2616500	1574100	14038000	7937300	6100900	2795	4566	2634	17164;17165;17166;17167;17168;17169;17170;17171;17172	23450;23451;23452;23453;23454;23455	23451			6	
AIYEVLFR	0	Unmodified	1009.5597	0.55966693	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.419	72.125	2	0.03729	62531	160511_QHF_FH_JSI12i_3	48.561	37.688			1.1144	1.2029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.2029	NaN	1	1	Median	70749000	36095000	34654000	0	0	0	0	0	0	0	0	0	70749000	36095000	34654000	2796	2636	2635	17173	23456	23456			1	
AIYFDGDFGQIVR	0	Unmodified	1499.7409	0.74087877	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				85.178	84.608	2	0.030456	74657	160511_QHF_FH_JSI9i_2	60.518	37.877			1.8592	1.5773	NaN	1	1	Median	1.8592	1.5773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52228000	12786000	39442000	52228000	12786000	39442000	0	0	0	0	0	0	0	0	0	2797	4221	2636	17174	23457	23457			1	
AIYHDLEQSIR	0	Unmodified	1343.6834	0.68336389	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.6		4	5						6	3	3	5	4	44.716	40.81	2;3	7.47E-19	34714	160511_QHF_FH_JSI12i_3	142.08	127.65			0.94229	0.93512	18.887	13	2	Median	1.2307	1.0398	28.345	3	1	Median	0.87854	1.0491	27.431	2	0	Median	0.95998	0.92178	19.894	4	0	Median	0.88488	0.92763	11.339	4	1	Median	1468000000	782530000	685470000	111170000	50707000	60464000	122550000	68489000	54059000	552880000	288230000	264650000	681400000	375100000	306300000	2798	5435	2637	17175;17176;17177;17178;17179;17180;17181;17182;17183;17184;17185;17186;17187;17188;17189	23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475	23471			17	
AIYHLEAFVAK	1	Unmodified	1260.6867	0.68665836	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.62		3	2						8	3	2	3	5	63.359	57.494	2;3	2.7876E-12	30532	160513_QHF_FH_JSI9Kac_6	130.01	107.96			0.86172	0.89528	55.075	13	5	Median	1.0859	0.90927	52.611	3	1	Plateau	0.80116	0.96275	10.275	2	0	Median	1.0922	1.0272	36.009	3	1	Plateau	0.61419	0.66681	76.262	5	3	Median	1481900000	877760000	604150000	333490000	170730000	162770000	185470000	112760000	72709000	350030000	170340000	179690000	612910000	423920000	188990000	2799	1506	2638	17190;17191;17192;17193;17194;17195;17196;17197;17198;17199;17200;17201;17202	23476;23477;23478;23479;23480;23481;23482;23483;23484;23485;23486;23487;23488;23489;23490;23491;23492;23493;23494	23484			19	
AIYNNMK	1	Unmodified	852.41637	0.41637351	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS		By MS/MS	By matching	2.4	0.49		3	2							1		2	2	15.531	15.16	2	0.0031651	12142	160511_QHF_FH_JSI11i_2	106.29	64.784			0.98953	0.99142	9.0498	5	0	Median	1.2854	1.0905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96302	0.92859	9.2586	2	0	Median	0.90688	0.94437	7.3111	2	0	Median	785450000	415510000	369940000	212970000	104620000	108350000	0	0	0	434260000	238930000	195320000	138220000	71955000	66267000	2800	1103	2639	17203;17204;17205;17206;17207	23495;23496;23497;23498	23498			4	
AIYPFDGHNEGTLAMK	1	Unmodified	1762.8349	0.83485551	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	61.449	60.665	3	1.2161E-05	53766	160511_QHF_FH_JSI10i_2	94.487	90.096			1.0192	1.0454	10.173	5	0	Median	1.1743	0.97938	NaN	1	0	Median	0.8535	1.0454	NaN	1	0	Median	1.003	1.0086	NaN	1	0	Median	1.1332	1.2002	6.2025	2	0	Median	351620000	175670000	175950000	68239000	37710000	30529000	76755000	37759000	38996000	99178000	47107000	52071000	107450000	53092000	54354000	2801	2934	2640	17208;17209;17210;17211;17212	23499;23500;23501;23502	23502			3	
AIYQATYR	0	Unmodified	984.50288	0.50288033	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.52		4	4					4	4	4	4	4	4	27.419	22.509	2	3.6E-30	18998	160511_QHF_FH_JSI12i_3	204.19	165.95			1.0809	1.1017	10.462	16	0	Median	1.3324	1.1481	5.4542	4	0	Median	0.90613	1.0815	11.118	4	0	Median	1.0589	1.022	15.635	4	0	Median	1.0544	1.1188	11.257	4	0	Median	3146500000	1556400000	1590200000	455940000	188000000	267940000	597180000	346460000	250730000	1110500000	549390000	561100000	982940000	472530000	510400000	2802	1303	2641	17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223;17224;17225;17226;17227;17228	23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524;23525;23526;23527;23528;23529	23527			27	
AIYQVYNALQEK	1	Unmodified	1438.7456	0.7456298	2602	Q15018	FAM175B	BRISC complex subunit Abro1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.8	2	2	6							2	3	3	2	60.968	60.347	2	2.2275E-11	53129	160511_QHF_FH_JSI9i_2	153.12	114.1			1.0234	0.98117	51.686	10	6	Median	0.72392	0.60955	68.238	2	1	Median	0.79063	0.97482	68.5	3	1	Median	1.4122	0.9657	38.541	3	2	Plateau	1.161	1.1742	26.729	2	2	Median	763930000	394150000	369780000	59169000	26893000	32276000	126990000	71962000	55023000	278590000	148830000	129760000	299180000	146460000	152720000	2803	2602	2642	17229;17230;17231;17232;17233;17234;17235;17236;17237;17238	23530;23531;23532;23533;23534;23535;23536;23537;23538;23539;23540	23537			11	
AIYVEYGYHITK	1	Unmodified	1455.7398	0.73981614	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	60.092	50.822	2;3	9.3008E-31	27956	160513_QHF_FH_JSI10Kac_6	192.1	156.15			1.1924	1.1155	28.873	9	5	Median	1.2448	1.0438	48.291	3	2	Median	0.78727	0.94109	1.3777	2	0	Median	1.2089	1.159	5.4142	2	1	Median	1.2571	1.3552	22.92	2	2	Median	907470000	462900000	444570000	201590000	91472000	110110000	361810000	193720000	168100000	201650000	111930000	89716000	142420000	65778000	76642000	2804	4080	2643	17239;17240;17241;17242;17243;17244;17245;17246;17247	23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554	23553			14	
AKAEEEGYFEAFK	2	Unmodified	1517.7038	0.70382456	3224	Q7L3B6	CDC37L1	Hsp90 co-chaperone Cdc37-like 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	47.617	47.377	2	0.0092751	40519	160511_QHF_FH_JSI12i_3	63.408	43.105			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2805	3224	2644	17248	23555	23555			1	
AKAYDHLFK	2	Acetyl (K);Acetyl (Protein N-term)	1175.5975	0.597509	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	72.851	62.147	2	0.00013981	33191	160513_QHF_FH_JSI10Kac_4	57.598	41.936			1.0151	1.0881	41.636	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1843	1.4154	NaN	1	0	Median	0.6248	0.62606	NaN	1	0	Median	1.0151	1.0881	NaN	1	0	Median	10952000	5745700	5206700	0	0	0	4298700	1995600	2303200	3489700	2231100	1258600	3163900	1519000	1644900	2806	1730	2645	17249;17250;17251	23556;23557;23558;23559;23560	23556	1746		5	
AKDAGLIEANGELK	2	Acetyl (K);Acetyl (Protein N-term)	1511.7831	0.78313752	2512	Q14186	TFDP1	Transcription factor Dp-1	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11	0				2							1		1	76.785	68.281	2	0.0011104	26868	160513_QHF_FH_JSI10Kac_1	78.908	54.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2807	2512	2646	17252;17253	23561;23562	23562	2506		2	
AKDDATLSGK	2	Unmodified	1004.5138	0.51383895	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	4.07	4	9	1				2			3	4	3	6	6.5516	5.282	2;3	4.6857E-09	3864	160511_QHF_FH_JSI9i_2	138.22	85.737			0.975	1.079	46.06	16	7	Median	1.3275	1.1319	37.695	3	1	Plateau	0.975	1.1857	47.917	4	2	Median	0.9239	0.93972	50.845	3	1	Plateau	0.95372	0.99407	54.344	6	3	Median	2525800000	1214100000	1311700000	447190000	192750000	254440000	636900000	324060000	312840000	618340000	297410000	320920000	823410000	399910000	423500000	2808	2415	2647	17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269	23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579	23573			17	
AKDEQSAVSMLK	2	Unmodified	1305.6599	0.65985126	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	27.743	27.698	2	6.9161E-09	23179	160511_QHF_FH_JSI12i_3	122.18	86.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2809	2162	2648	17270	23580	23580			1	
AKDPFAHLPK	2	Unmodified	1122.6186	0.61857879	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	29.891	28.966	3;4	0.00010899	24144	160511_QHF_FH_JSI9i_3	63.624	58.444			0.83812	0.8051	64.71	6	2	Median	0.65474	0.53552	53.414	2	1	Median	0.35231	0.40544	101.26	2	1	Median	1.001	0.91931	NaN	1	0	Median	0.98417	1.0074	NaN	1	0	Median	1386000000	817300000	568690000	435570000	259530000	176040000	416090000	306330000	109760000	139660000	73209000	66454000	394670000	178230000	216440000	2810	1284	2649	17271;17272;17273;17274;17275;17276	23581;23582;23583;23584;23585;23586;23587;23588;23589;23590;23591	23588			11	
AKEDFLK	2	Unmodified	849.45962	0.45961853	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	16.727	16.752	3	0.0099707	13352	160511_QHF_FH_JSI12i_3	54.157	28.598			0.74964	0.73343	7.3504	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83024	0.77256	NaN	1	1	Median	0.67686	0.69628	NaN	1	1	Median	410380000	206580000	203800000	0	0	0	0	0	0	102120000	56538000	45578000	308260000	150040000	158220000	2811	1215;1121	2650	17277;17278	23592;23593	23593			2	
AKEDFLVYK	2	Unmodified	1111.5914	0.59136099	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	38.583	38.403	2;3	0.0002446	32671	160511_QHF_FH_JSI12i_3	99.815	75.66			2.6525	2.7006	108.02	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6525	2.7006	108.02	2	1	Median	557000000	91457000	465550000	0	0	0	0	0	0	0	0	0	557000000	91457000	465550000	2812	138	2651	17279;17280	23594;23595;23596	23595			3	
AKEEELR	1	Unmodified	873.4556	0.45559579	2255	Q07666;Q5VWX1;O75525;Q9UBC1	KHDRBS1;KHDRBS2;KHDRBS3;NFKBIL1	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3;NF-kappa-B inhibitor-like protein 1	no	no	0	0	0	1				By MS/MS	3	0			1										1	5.4029	5.4984	3	0.009291	3016	160511_QHF_FH_JSI12i_3	55.531	0.81808			1.1419	1.1524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1419	1.1524	NaN	1	1	Median	775620000	432110000	343510000	0	0	0	0	0	0	0	0	0	775620000	432110000	343510000	2813	2255	2652	17281	23597	23597			1	
AKEEELRK	2	Unmodified	1001.5506	0.55055881	2255	Q07666;Q5VWX1;O75525	KHDRBS1;KHDRBS2;KHDRBS3	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	5.1061	4.8377	3	0.00064769	2642	160511_QHF_FH_JSI11i_3	98.048	24.815			0.97653	0.93328	13.593	7	0	Median	1.2633	1.0413	15.482	2	0	Median	0.77853	0.91184	10.933	2	0	Median	0.97805	0.95579	4.1957	2	0	Median	0.72062	0.75139	NaN	1	0	Median	5534200000	2810700000	2723500000	670950000	318120000	352830000	1132600000	612190000	520390000	3160100000	1590500000	1569600000	570600000	289880000	280720000	2814	2255	2653	17282;17283;17284;17285;17286;17287;17288	23598;23599;23600;23601;23602;23603;23604;23605;23606;23607;23608;23609	23598			12	
AKEELEK	2	Unmodified	845.44945	0.44944778	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.473	5.5686	3	0.0039602	3129	160511_QHF_FH_JSI12i_3	75.213	28.787			0.79789	0.80113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79789	0.80113	NaN	1	0	Median	810460000	460910000	349550000	0	0	0	0	0	0	0	0	0	810460000	460910000	349550000	2815	2780	2654	17289	23610	23610			1	
AKEENTLEQSK	2	Acetyl (K)	1317.6412	0.64122431	5799				yes	yes	1	0	0	1	By MS/MS				15	0								1		1				58.405	47.756	2	0.0036048	25332	160513_QHF_FH_JSI9Kac_5	70.919	28.81	+		1.4817	1.2687	NaN	1	0	Median	1.4817	1.2687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13047000	4927300	8119800	13047000	4927300	8119800	0	0	0	0	0	0	0	0	0	2816	5799	2655	17290	23611	23611	3566		1	
AKEEVVEHLSR	1	Acetyl (K)	1337.6939	0.69392858	5758				yes	yes	1	0	0	1		By MS/MS		By MS/MS	15	0								3			2		1	76.225	65.749	2	0.02114	32769	160513_QHF_FH_JSI10Kac_5	48.796	26.056	+		0.7858	0.94295	13.355	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7858	0.94295	0	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0951	1.1884	NaN	1	0	Median	132910000	75951000	56961000	0	0	0	104610000	62399000	42213000	0	0	0	28300000	13552000	14748000	2817	5758	2656	17291;17292;17293	23612	23612	3551		1	
AKEPAGENGGR	1	Unmodified	1084.5261	0.52613497	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		3.7273	3.4371	3	0.0029462	1000	160511_QHF_FH_JSI11i_3	41.317	34.57			0.6726	0.70711	75.26	5	1	Median	2.6019	2.2331	NaN	1	0	Median	0.37002	0.43666	68.17	2	1	Median	0.77529	0.73205	15.617	2	0	Median	NaN	NaN	NaN	0	0	Median	139090000	74579000	64515000	20195000	3809000	16386000	41436000	29138000	12298000	77463000	41633000	35830000	0	0	0	2818	1100	2657	17294;17295;17296;17297;17298	23613;23614;23615;23616;23617;23618	23615			6	
AKEQSQAK	2	Acetyl (K)	930.47706	0.47705951	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	0.593				4	31	20				13	15	13	14	1.2192	-6.9196	2	1.803E-16	148	160513_QHF_FH_JSI12Kac_3	172.23	90.449			0.68746	0.75889	100.1	48	2	Median	0.80537	0.62993	56.806	9	0	Median	0.6559	0.79009	133.38	15	1	Median	0.85601	0.82092	127.72	12	1	Median	0.62324	0.68488	35.136	12	0	Median	2084200000	1149800000	934440000	777790000	413730000	364060000	512180000	303500000	208670000	303220000	156870000	146350000	491040000	275680000	215360000	2819	3857	2658	17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324;17325;17326;17327;17328;17329;17330;17331;17332;17333;17334;17335;17336;17337;17338;17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353	23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637;23638;23639;23640;23641;23642;23643;23644;23645;23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659;23660;23661;23662;23663;23664;23665;23666;23667;23668;23669;23670;23671;23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682	23646	2961;2962		64	
AKEQSQAKSEK	3	2 Acetyl (K)	1316.6572	0.65720872	3857	Q92613	JADE3	Protein Jade-3	yes	yes	2	0	0	2			By MS/MS	By MS/MS	12	0					2							1	1	9.8753	2.6108	2	1.9852E-08	3406	160513_QHF_FH_JSI12Kac_2	123.8	85.715			1.5444	1.5552	70.015	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6251	2.5515	NaN	1	0	Median	0.90857	0.94791	NaN	1	0	Median	8295300	3743300	4552000	0	0	0	0	0	0	2393400	700330	1693100	5901900	3042900	2858900	2820	3857	2659	17354;17355	23683	23683	2961;2962		1	
AKFDAELLEIK	2	Unmodified	1275.7075	0.70745338	4709	Q9H446	RWDD1	RWD domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	64.438	64.062	2;3	0.0025181	55359	160511_QHF_FH_JSI12i_3	73.273	52.403			0.7524	0.76391	14.225	3	2	Median	NaN	NaN	NaN	0	0	Median	0.56677	0.70329	NaN	1	1	Median	0.98041	0.92784	NaN	1	1	Median	0.7524	0.76391	NaN	1	0	Median	235200000	124330000	110870000	0	0	0	19301000	10551000	8749900	84096000	35725000	48371000	131800000	78053000	53751000	2821	4709	2660	17356;17357;17358	23684;23685;23686	23686			3	
AKFEELNMDLFR	1	Oxidation (M)	1527.7392	0.73916421	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	61.607	61.193	2;3	0.0014736	54465	160511_QHF_FH_JSI11i_3	62.088	54.478			1.0785	1.0152	25.935	5	1	Median	NaN	NaN	NaN	0	0	Median	0.81085	0.92712	NaN	1	1	Median	1.0105	0.94504	10.124	2	0	Median	1.4652	1.4901	5.174	2	0	Median	442830000	194200000	248630000	0	0	0	35037000	17414000	17623000	170940000	75239000	95699000	236850000	101540000	135310000	2822	982	2661	17359;17360;17361;17362;17363	23687;23688;23689;23690	23687		556	4	
AKFEELNMDLFR	1	Unmodified	1511.7442	0.74424959	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		8	8						2	4	6	4	4	76.926	75.373	2;3	2.6631E-41	65857	160511_QHF_FH_JSI12i_3	208.72	170.63			0.97129	1.0051	23.298	18	7	Median	1.321	1.0975	6.4099	4	1	Median	0.59021	0.70154	21.922	6	3	Median	0.97129	0.95407	9.7048	4	1	Median	1.0292	1.0369	23.308	4	2	Median	5617800000	2922200000	2695600000	396990000	167710000	229280000	1013400000	669560000	343810000	1791400000	871290000	920080000	2416100000	1213700000	1202400000	2823	982	2661	17364;17365;17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381	23691;23692;23693;23694;23695;23696;23697;23698;23699;23700;23701;23702;23703;23704;23705;23706;23707;23708;23709;23710;23711;23712;23713;23714;23715;23716;23717;23718;23719;23720;23721;23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733	23728			43	
AKFENLCK	2	Unmodified	1008.5063	0.50625115	898;2870	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.06		1	8						2	2	3	2	4	17.946	16.286	2;3	6.7236E-05	13316	160511_QHF_FH_JSI11i_3	114.89	90.74			1.2892	1.0306	64.807	11	6	Median	1.2837	1.0176	1.8017	2	0	Median	2.1163	2.3955	78.977	3	3	Median	0.58515	0.55365	5.2838	2	0	Median	1.7575	1.8426	64.804	4	3	Median	20742000000	9223100000	11519000000	3199000000	1171300000	2027600000	2621800000	1031100000	1590700000	4854900000	2291000000	2563900000	10067000000	4729700000	5337100000	2824	898;2870	2662	17382;17383;17384;17385;17386;17387;17388;17389;17390;17391;17392	23734;23735;23736;23737;23738;23739;23740;23741;23742;23743;23744;23745;23746;23747	23737			14	
AKFENLCK	2	Acetyl (K)	1050.5168	0.51681584	898;2870	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	1	0	0	1		By MS/MS	By MS/MS		13.8	0.748						2	2	1			3	2		43.247	33.576	2	0.0072504	19929	160513_QHF_FH_JSI11Kac_4	80.165	46.903			1.3911	1.6118	116.3	5	0	Median	NaN	NaN	NaN	0	0	Median	1.415	1.6613	7.8017	3	0	Median	0.20943	0.20554	10.317	2	0	Median	NaN	NaN	NaN	0	0	Median	145590000	98704000	46891000	0	0	0	28280000	11771000	16509000	117320000	86933000	30382000	0	0	0	2825	898;2870	2662	17393;17394;17395;17396;17397	23748;23749;23750;23751	23749	642;643;2704		4	
AKFENLCKLMK	3	Acetyl (K)	1422.7363	0.73632744	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		67.189	57.584	2	0.0011315	31199	160513_QHF_FH_JSI11Kac_6	99.215	63.704			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12004000	12004000	0	0	0	0	0	0	0	12004000	12004000	0	0	0	0	2826	898	2663	17398	23752	23752	642;643;644		1	
AKFSLIQFHR	1	Acetyl (K)	1287.7088	0.70879078	5372	Q9UKL3	CASP8AP2	CASP8-associated protein 2	yes	yes	1	0	0	1		By MS/MS	By matching		16	0									2		1	1		72.7	64.244	3	0.038657	35393	160513_QHF_FH_JSI10Kac_6	36.671	30.235			0.8303	0.88758	25.939	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93377	1.0663	NaN	1	0	Median	0.73829	0.73884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16957000	7949900	9006800	0	0	0	12652000	5894300	6757900	4304500	2055600	2248900	0	0	0	2827	5372	2664	17399;17400	23753	23753			0	
AKFYSVYGSGQR	1	Acetyl (K)	1403.6834	0.68336389	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	2	2	54.483	44.19	2	6.2526E-05	23912	160513_QHF_FH_JSI11Kac_6	93.058	65.943			0.80852	0.91815	30.028	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7081	0.8282	NaN	1	0	Median	0.64069	0.61487	NaN	1	0	Median	1.0287	1.1241	14.033	2	0	Median	20751000	12830000	7921400	0	0	0	1632400	864600	767830	13008000	8828400	4180100	6110500	3137000	2973500	2828	5591	2665	17401;17402;17403;17404;17405;17406	23754;23755;23756;23757;23758;23759;23760;23761;23762	23754	3491		9	
AKGEIPEVAFMK	2	Unmodified	1318.6955	0.69550848	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	54.46	54.342	3	0.00092217	48197	160511_QHF_FH_JSI11i_3	49.483	43.824			0.7229	0.70176	32.238	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59797	0.55871	NaN	1	0	Median	0.87392	0.88143	NaN	1	1	Median	221790000	110650000	111140000	0	0	0	0	0	0	49627000	28955000	20672000	172170000	81699000	90467000	2829	5257	2666	17407;17408	23763;23764	23763			2	
AKGEVDVDVPK	2	Unmodified	1155.6136	0.61355299	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	2	3	2	24.548	24.025	3	0.00064781	19707	160511_QHF_FH_JSI12i_3	62.924	40.007			0.86392	0.95435	55.163	7	3	Median	0.76935	0.64645	NaN	1	0	Median	1.0204	1.237	49.74	2	1	Median	0.6436	0.60391	96.393	2	2	Median	0.95303	1.0049	7.3	2	0	Median	530970000	297560000	233410000	73064000	43361000	29703000	120930000	63426000	57500000	99777000	55168000	44609000	237200000	135610000	101600000	2830	2286	2667	17409;17410;17411;17412;17413;17414;17415;17416	23765;23766;23767;23768;23769;23770	23769			6	
AKGLVPEDDTK	2	Acetyl (K)	1213.619	0.6190323	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.495					4	3					2	2	3	39.496	30.673	2	0.000845	13561	160513_QHF_FH_JSI11Kac_2	87.913	60.799			0.3719	0.38653	130.77	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1912	1.397	NaN	1	0	Median	0.13386	0.13206	107.09	2	1	Median	0.48597	0.53054	NaN	1	0	Median	28707000	16612000	12095000	0	0	0	7195400	1982100	5213300	14452000	11287000	3165000	7059800	3342700	3717100	2831	2676	2668	17417;17418;17419;17420;17421;17422;17423	23771;23772;23773;23774;23775;23776;23777;23778;23779;23780;23781	23772	2624		11	
AKGPSESSK	2	Acetyl (K)	931.46108	0.4610751	3732	Q8TEA8	DTD1	D-tyrosyl-tRNA(Tyr) deacylase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.696				1	3	4					2	4	2	4.9353	-2.3485	2	0.0067657	1524	160513_QHF_FH_JSI12Kac_3	69.198	8.5159			0.92375	0.97421	10.297	8	0	Median	NaN	NaN	NaN	0	0	Median	0.72387	0.85881	4.4462	2	0	Median	1.0475	1.0269	9.7554	4	0	Median	0.90865	1	8.1361	2	0	Median	276230000	147620000	128620000	0	0	0	89525000	53873000	35652000	96606000	48898000	47708000	90101000	44845000	45257000	2832	3732	2669	17424;17425;17426;17427;17428;17429;17430;17431	23782;23783;23784;23785;23786;23787;23788;23789	23786	2921		8	
AKHDELTYF	1	Unmodified	1122.5346	0.53457439	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	3	2	4	4	38.925	36.775	2;3	0.0062054	32001	160511_QHF_FH_JSI12i_2	38.303	32.522			1.0909	1.0446	21.003	13	0	Median	1.1757	1.0058	33.292	3	0	Median	0.78695	0.96355	11.415	2	0	Median	1.1149	1.1099	7.3233	4	0	Median	1.0115	1.0712	24.033	4	0	Median	1664400000	827570000	836790000	129700000	53381000	76322000	409510000	223240000	186270000	558350000	264220000	294140000	566800000	286730000	280070000	2833	804	2670	17432;17433;17434;17435;17436;17437;17438;17439;17440;17441;17442;17443;17444	23790;23791;23792;23793;23794;23795;23796;23797;23798;23799;23800;23801;23802;23803;23804;23805;23806;23807	23792			18	
AKHDELTYF	1	Acetyl (K)	1164.5451	0.54513908	804	P04080	CSTB	Cystatin-B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	63.109	52.296	2	0.0065389	28622	160513_QHF_FH_JSI10Kac_4	69.825	59.838			0.82789	0.89634	48.076	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2009	1.4395	1.5818	2	0	Median	0.56517	0.5567	14.746	2	0	Median	0.82789	0.89634	NaN	1	0	Median	165370000	86079000	79286000	0	0	0	68219000	31453000	36766000	28612000	18226000	10386000	68534000	36400000	32134000	2834	804	2670	17445;17446;17447;17448;17449	23808;23809;23810;23811;23812	23808	434		5	
AKHHAISAK	2	Acetyl (K)	1003.5563	0.55631289	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		6.27	-3.0942	2	0.029709	2218	160513_QHF_FH_JSI11Kac_6	58.981	13.263			0.02187	0.021663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.02187	0.021663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4035300	4001100	34236	0	0	0	0	0	0	4035300	4001100	34236	0	0	0	2835	1299	2671	17450	23813	23813			1	
AKHHPDLIFCR	1	Acetyl (K);Acetyl (Protein N-term)	1476.7296	0.72960258	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	56.948	47.621	2;3	3.0127E-11	26171	160513_QHF_FH_JSI10Kac_6	123.84	95.973			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2836	3246	2672	17451;17452;17453;17454;17455;17456;17457;17458	23814;23815;23816;23817;23818;23819;23820;23821;23822	23822	2811		9	
AKHHPDLIFCRK	2	Acetyl (K);Acetyl (Protein N-term)	1604.8246	0.8245656	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	1	1	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	47.696	38.407	3;4	2.6354E-16	20989	160513_QHF_FH_JSI10Kac_6	83.314	75.21			1.0613	1.1788	34.064	8	0	Median	1.9545	1.6725	7.2304	2	0	Median	1.1995	1.3961	2.1761	2	0	Median	0.74177	0.73092	0.78056	2	0	Median	0.92669	0.99844	1.7492	2	0	Median	298700000	136150000	162540000	34982000	11795000	23187000	161230000	67614000	93617000	37308000	22083000	15225000	65175000	34661000	30514000	2837	3246	2673	17459;17460;17461;17462;17463;17464;17465;17466	23823;23824;23825;23826;23827;23828;23829;23830;23831;23832;23833;23834;23835	23832	2811		13	
AKHSGDYFTLLR	1	Acetyl (K)	1448.7412	0.74121312	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.136	57.531	3	0.042055	31204	160513_QHF_FH_JSI11Kac_6	35.608	22.841			0.47318	0.4792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47318	0.4792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7402800	6767900	634900	0	0	0	0	0	0	7402800	6767900	634900	0	0	0	2838	3921	2674	17467	23836	23836			1	
AKIDDPTDSKPEDWDKPEHIPDPDAK	4	Acetyl (K)	3000.3989	0.39887536	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	3			By MS/MS		16	0									2			2		65.045	55.379	4;5	6.1588E-13	29934	160513_QHF_FH_JSI11Kac_6	91.175	84.742			0.23832	0.23022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23832	0.23022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31974000	28191000	3783600	0	0	0	0	0	0	31974000	28191000	3783600	0	0	0	2839	1297	2675	17468;17469	23837;23838	23837	1223		2	
AKIEDEK	2	Unmodified	831.4338	0.43379771	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	9	9	6							4	6	8	6	5.205	4.9523	2;3	0.0032179	2710	160511_QHF_FH_JSI12i_3	82.452	17.2			0.93811	1.01	25.955	24	2	Median	1.394	1.1791	26.192	4	0	Linear	0.8132	0.99547	24.109	6	1	Median	1.0212	0.99574	26.542	8	1	Median	0.91048	0.98247	32.744	6	0	Median	14373000000	7349300000	7024000000	2127900000	941980000	1185900000	3297800000	1833800000	1464000000	4604400000	2185700000	2418700000	4343300000	2387800000	1955500000	2840	1852	2676	17470;17471;17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493	23839;23840;23841;23842;23843;23844;23845;23846;23847;23848;23849;23850;23851;23852;23853	23853			15	
AKIELLGSYDPQK	2	Unmodified	1460.7875	0.78749461	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	52.529	52.123	2;3	0.00076762	44643	160511_QHF_FH_JSI12i_3	103.75	88.485			1.2472	1.1856	9.716	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0115	1.1856	NaN	1	0	Median	1.2139	1.1379	4.8372	2	1	Median	1.2993	1.3542	5.8805	2	0	Median	351230000	149870000	201360000	0	0	0	9545800	5193800	4352000	108170000	55133000	53033000	233520000	89543000	143970000	2841	1247	2677	17494;17495;17496;17497;17498	23854;23855;23856;23857	23856			4	
AKISSPTETER	1	Acetyl (K);Acetyl (Protein N-term)	1301.6463	0.64630969	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	44.24	35.234	2	0.0052836	15823	160513_QHF_FH_JSI10Kac_2	54.608	42.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2842	1387	2678	17499;17500;17501;17502;17503;17504	23858;23859;23860;23861;23862;23863	23859	1340		6	
AKKDDTDDEIAK	3	Unmodified	1347.6518	0.65178899	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	4	2	2	6.6473	6.3834	2;3	1.9639E-13	3866	160511_QHF_FH_JSI12i_3	155.15	112.41			0.76318	0.94201	23.41	10	0	Median	1.4898	1.2589	1.1293	2	0	Median	0.71496	0.85959	13.424	4	0	Median	1.1113	1.0569	2.9518	2	0	Median	0.67903	0.68687	4.4179	2	0	Median	1610300000	879870000	730460000	93244000	38147000	55097000	411730000	239900000	171830000	842370000	445870000	396490000	262990000	155950000	107040000	2843	1299	2679	17505;17506;17507;17508;17509;17510;17511;17512;17513;17514	23864;23865;23866;23867;23868;23869;23870;23871;23872;23873;23874;23875;23876;23877;23878	23878			15	
AKKPAAAAGAK	3	Unmodified	982.59236	0.59236404	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				4.5674	4.068	2;3	8.7637E-06	2040	160511_QHF_FH_JSI9i_3	108.7	91.466			0.21901	0.17612	2.1302	2	2	Median	0.21901	0.17612	2.1302	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	636900000	528560000	108330000	636900000	528560000	108330000	0	0	0	0	0	0	0	0	0	2844	969	2680	17515;17516	23879;23880	23879			2	
AKKPAAATVTK	3	Unmodified	1084.6604	0.66044361	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.6303	5.1073	3	0.00033058	3122	160511_QHF_FH_JSI9i_3	87.001	61.564			0.16707	0.13338	NaN	1	1	Median	0.16707	0.13338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159880000	135310000	24568000	159880000	135310000	24568000	0	0	0	0	0	0	0	0	0	2845	1099	2681	17517	23881	23881			1	
AKLDENSAFLQFNWK	2	Unmodified	1809.905	0.90498399	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	78.729	78.474	3	0.00010542	68102	160511_QHF_FH_JSI12i_3	83.692	65.096			0.98798	0.99775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98798	0.99775	NaN	1	0	Median	75497000	37589000	37908000	0	0	0	0	0	0	0	0	0	75497000	37589000	37908000	2846	2470	2682	17518	23882	23882			1	
AKLDFFK	2	Unmodified	867.48544	0.48543935	218	O14920	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.65	43.521	3	0.0079338	37775	160511_QHF_FH_JSI11i_3	51.854	36.192			3.334	3.4576	93.061	3	3	Plateau	2.6479	2.2421	NaN	1	1	Median	0.49096	0.58065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.334	3.4576	NaN	1	1	Median	34708000	12015000	22693000	11382000	2763000	8618800	8701400	5761300	2940100	0	0	0	14625000	3491300	11134000	2847	218	2683	17519;17520;17521;17522	23883;23884;23885;23886	23883			4	
AKLDNNK	2	Acetyl (K)	843.44503	0.4450311	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		8.3138	0.97743	2	0.00014857	3277	160513_QHF_FH_JSI11Kac_3	119.29	69.932			0.5841	0.62473	118.65	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2458	1.4456	NaN	1	0	Median	0.27385	0.26998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22615000	16187000	6428700	0	0	0	6878700	2901200	3977500	15737000	13285000	2451200	0	0	0	2848	576	2684	17523;17524	23887	23887	296		1	
AKLDQAPK	2	Acetyl (K)	911.50763	0.50763136	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	22.383	15.054	2	0.0027481	9823	160513_QHF_FH_JSI11Kac_3	95.502	43.02			0.86241	0.85374	9.3582	3	0	Median	NaN	NaN	NaN	0	0	Median	0.63869	0.75779	NaN	1	0	Median	0.8716	0.85374	NaN	1	0	Median	0.86241	0.91138	NaN	1	0	Median	25570000	12929000	12641000	0	0	0	8853500	5177500	3676100	7758400	3231600	4526800	8958000	4519600	4438400	2849	3330	2685	17525;17526;17527	23888;23889	23888	2839		2	
AKLDSLQDIGMDHQALLK	2	Unmodified	1995.0459	0.04591092	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	66.116	65.522	3	1.0672E-05	56437	160511_QHF_FH_JSI12i_3	117.18	112.08			0.8629	0.89117	6.7728	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71024	0.83291	NaN	1	0	Median	1.0255	0.95374	NaN	1	0	Median	0.8629	0.89117	NaN	1	0	Median	304690000	133250000	171440000	0	0	0	19416000	10948000	8468100	102720000	41219000	61504000	182550000	81083000	101460000	2850	2100	2686	17528;17529;17530	23890;23891;23892	23892			3	
AKLEEHFK	2	Unmodified	1000.5342	0.53418046	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	12.426	12.035	2;3	0.0002698	9337	160511_QHF_FH_JSI11i_3	94.692	73.228			1.117	1.0153	12.872	8	1	Median	1.1571	0.95746	7.1928	2	0	Median	0.77263	0.89476	18.963	2	1	Median	1.1058	1.0288	3.9065	2	0	Median	1.1452	1.1567	3.2026	2	0	Median	2075900000	1093000000	982840000	133640000	57167000	76468000	250500000	148300000	102200000	495420000	234690000	260730000	1196300000	652870000	543440000	2851	127	2687	17531;17532;17533;17534;17535;17536;17537;17538	23893;23894;23895;23896;23897;23898;23899;23900;23901;23902	23896			10	
AKLEEHFKNQELR	2	Acetyl (K)	1682.874	0.87401821	127	O00410	IPO5	Importin-5	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		42.072	32.475	3	0.00455	17852	160513_QHF_FH_JSI11Kac_6	73.386	56.724			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5071200	5071200	0	0	0	0	0	0	0	5071200	5071200	0	0	0	0	2852	127	2688	17539	23903	23903	81		1	
AKLEQLFQDEVAK	2	Unmodified	1517.809	0.80895834	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	61.879	61.219	2;3	1.9838E-14	54181	160511_QHF_FH_JSI11i_3	160.38	145.11			1.0603	1.0181	50.851	5	1	Median	NaN	NaN	NaN	0	0	Median	1.4687	1.6816	70.96	2	0	Median	0.89045	0.84396	23.444	2	1	Median	1.2177	1.2245	NaN	1	0	Median	394540000	214980000	179570000	0	0	0	81337000	41364000	39973000	258360000	152600000	105760000	54843000	21014000	33828000	2853	2636	2689	17540;17541;17542;17543;17544;17545;17546	23904;23905;23906;23907;23908;23909	23904			6	
AKMDAEQDPNVQVDHLNLLK	2	Unmodified	2277.1423	0.1423305	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	59.002	58.872	3;4	7.5305E-06	50728	160511_QHF_FH_JSI12i_3	73.294	66.078			0.93673	0.91847	9.4671	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0503	0.98205	NaN	1	0	Median	0.83547	0.85899	NaN	1	0	Median	120340000	60598000	59745000	0	0	0	0	0	0	45275000	26080000	19195000	75069000	34519000	40550000	2854	2195	2690	17547;17548;17549	23910;23911	23910			2	
AKMIGLNWR	1	Acetyl (K)	1129.6066	0.6066339	5833				yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	76.866	67.692	3	0.0084121	36967	160513_QHF_FH_JSI11Kac_6	44.203	24.96	+		1.2989	1.2189	2.033	4	0	Median	1.478	1.2644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2989	1.2189	0	2	0	Median	1.1277	1.2078	NaN	1	0	Median	623530000	244850000	378680000	152260000	62802000	89462000	0	0	0	406910000	155650000	251260000	64359000	26406000	37953000	2855	5833	2691	17550;17551;17552;17553	23912	23912	3573		1	
AKNEILDEVISLSQVTPK	2	Unmodified	1983.0888	0.088821592	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	97.601	97.474	3	0.00011942	84034	160511_QHF_FH_JSI12i_3	65.784	57.47			1.2608	1.1605	35.903	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.58561	0.71278	NaN	1	1	Median	0.97377	0.92863	NaN	1	0	Median	1.3981	1.4503	NaN	1	0	Median	107890000	46823000	61071000	0	0	0	13496000	3880600	9614900	36614000	21822000	14793000	57783000	21120000	36663000	2856	409	2692	17554;17555;17556;17557	23913;23914;23915;23916	23916			4	
AKPAEAPAAAAPK	2	Unmodified	1191.6612	0.66117189	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.29	4	4	4				1			1	3	5	4	11.91	11.099	2;3	3.0201E-09	8752	160511_QHF_FH_JSI11i_3	142.07	125.44			0.93742	0.97216	8.7222	13	0	Median	1.1176	0.95388	NaN	1	0	Median	0.76981	0.9227	8.054	3	0	Plateau	1.1339	1.0833	8.6979	5	0	Median	0.90739	0.93516	7.9309	4	0	Median	2439500000	1144700000	1294800000	150270000	70867000	79408000	288340000	173990000	114350000	748320000	274320000	474000000	1252500000	625490000	627040000	2857	1465	2693	17558;17559;17560;17561;17562;17563;17564;17565;17566;17567;17568;17569;17570	23917;23918;23919;23920;23921;23922;23923;23924;23925;23926;23927;23928	23918			11	
AKPAEAPAAAAPK	2	Acetyl (K)	1233.6717	0.67173657	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12	0					2						1	1		32.836	24.312	2	0.0046554	11168	160513_QHF_FH_JSI11Kac_2	72.006	42.196			0.5151	0.54377	2.241	2	2	Median	NaN	NaN	NaN	0	0	Median	0.47709	0.55245	NaN	1	1	Median	0.55614	0.53522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4919300	3791600	1127700	0	0	0	3129500	2331000	798530	1789700	1460600	329170	0	0	0	2858	1465	2693	17571;17572	23929;23930	23929	1451		2	
AKPAMPQDSVPSPR	1	Unmodified	1479.7504	0.7503976	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3.54	3.34		5	7					1		4	4	4	1	30.539	29.01	2;3	5.511E-05	24238	160511_QHF_FH_JSI10i_3	99.668	92.124			0.9743	0.97487	34.898	13	2	Median	1.3472	1.0863	35.8	4	1	Median	0.78676	0.93303	46.78	4	1	Median	0.81271	0.93569	13.276	4	0	Linear	0.64923	0.74815	NaN	1	0	Median	1286700000	631720000	655010000	411680000	179260000	232410000	421700000	216730000	204970000	380270000	193660000	186600000	73096000	42069000	31028000	2859	1798	2694	17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585	23931;23932;23933;23934;23935;23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949	23936			19	
AKPCGVR	1	Acetyl (K);Acetyl (Protein N-term)	870.43817	0.43817159	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	28.328	20.713	2	0.0057863	10168	160513_QHF_FH_JSI12Kac_2	75.311	75.311			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2860	5391	2695	17586;17587;17588;17589;17590;17591	23950;23951;23952;23953;23954;23955	23955	3382		6	
AKPCSDPNR	1	Acetyl (K)	1085.4924	0.492392	5462	Q9UPP1	PHF8	Histone lysine demethylase PHF8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	10.624	3.3665	2	0.006684	4212	160513_QHF_FH_JSI10Kac_3	69.423	59.009			1.0128	1.1681	26.251	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0128	1.1681	NaN	1	0	Median	1.0017	0.95296	NaN	1	0	Median	1.4808	1.6043	NaN	1	0	Median	14971000	7864000	7107200	0	0	0	6664200	3851400	2812800	4640500	2342200	2298300	3666600	1670500	1996100	2861	5462	2696	17592;17593;17594	23956;23957;23958;23959;23960;23961	23961	3434		6	
AKPEPDILEEEK	2	Unmodified	1396.7086	0.70857559	3461	Q8IY95	TMEM192	Transmembrane protein 192	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.539	33.429	3	0.0086069	28220	160511_QHF_FH_JSI12i_3	48.467	42.747			1.0742	1.1191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.1191	NaN	1	1	Median	38301000	16361000	21940000	0	0	0	0	0	0	0	0	0	38301000	16361000	21940000	2862	3461	2697	17595	23962	23962			1	
AKPEYHK	2	Unmodified	871.4552	0.45520186	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	4.721	4.4628	2;3	0.0037269	2289	160511_QHF_FH_JSI11i_3	67.169	53.394			1.0199	0.97631	5.8734	5	1	Median	1.1916	0.96169	2.1338	2	0	Median	0.87685	1.0155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9557	0.96929	10.602	2	0	Median	7188300000	3537700000	3650600000	1415300000	581760000	833580000	1472200000	787740000	684500000	0	0	0	4300700000	2168200000	2132500000	2863	2147	2698	17596;17597;17598;17599;17600;17601;17602	23963;23964;23965;23966;23967;23968;23969	23963			7	
AKPEYISK	2	Unmodified	934.51238	0.51238239	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	10.261	10.292	2;3	0.0021542	7899	160511_QHF_FH_JSI11i_3	71.451	48.711			0.7108	0.73786	19.668	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91486	0.86812	24.443	2	0	Median	0.7108	0.73786	NaN	1	0	Median	419020000	260030000	158990000	0	0	0	0	0	0	214960000	129770000	85189000	204060000	130250000	73805000	2864	2471	2699	17603;17604;17605	23970;23971	23970			2	
AKPGFLPK	2	Unmodified	856.51707	0.51707383	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	22.425	21.791	3	0.0029742	17936	160511_QHF_FH_JSI10i_3	60.59	49.521			0.80583	0.6026	18.124	4	0	Linear	0.93801	0.76085	NaN	1	0	Median	0.78696	0.8996	NaN	1	0	Median	0.82514	0.78431	NaN	1	0	Median	0.57276	0.58318	NaN	1	0	Median	657750000	319030000	338730000	182960000	78297000	104660000	110970000	58870000	52098000	126340000	58412000	67930000	237490000	123450000	114040000	2865	5646	2700	17606;17607;17608;17609	23972;23973;23974;23975	23972			4	
AKPLLLQLPIGEAK	2	Unmodified	1489.9232	0.92320023	3948	Q969S9	GFM2	Ribosome-releasing factor 2, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			78.587	77.21	3	0.00030613	64770	160511_QHF_FH_JSI10i_3	66.004	60.725			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2866	3948	2701	17610	23976	23976			1	
AKPLNTSSK	2	Unmodified	944.5291	0.52909508	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			6							2	2		2	5.1492	4.8923	2;3	0.00019615	2732	160511_QHF_FH_JSI9i_3	89.08	56.759			0.79986	0.86276	9.9618	5	0	Median	1.1194	0.90956	7.4716	2	0	Median	0.79986	0.93086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76977	0.77921	4.5911	2	0	Median	2087200000	1048700000	1038600000	533770000	252570000	281200000	120940000	70277000	50659000	0	0	0	1432500000	725830000	706690000	2867	2970	2702	17611;17612;17613;17614;17615;17616	23977;23978;23979;23980;23981;23982;23983;23984;23985	23980			9	
AKPLTDSEK	2	Acetyl (K);Acetyl (Protein N-term)	1071.5448	0.54480473	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			40.844	31.87	2	0.044233	13376	160513_QHF_FH_JSI10Kac_1	31.074	21.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2868	992	2703	17617	23986	23986			1	
AKPLVLGPEFK	2	Unmodified	1197.7121	0.71214483	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	50.482	48.9	2;3	0.0010973	41428	160511_QHF_FH_JSI12i_3	90.827	76.153			0.75772	0.75598	8.2812	2	2	Median	0.85304	0.71298	NaN	1	1	Median	0.67305	0.80157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196090000	116610000	79484000	103310000	59687000	43624000	92784000	56924000	35860000	0	0	0	0	0	0	2869	3301	2704	17618;17619;17620;17621	23987;23988;23989;23990	23990			4	
AKPPADPAAAASPCR	1	Unmodified	1478.73	0.72999651	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		19.319	19.319	3	0.018712	16169	160511_QHF_FH_JSI11i_3	37.77	22.608			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2870	4609	2705	17622	23991	23991			1	
AKPPPGGGEQEPPPPPAPQDVEMK	2	Unmodified	2449.1948	0.19476	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	43.018	42.204	3	5.9409E-07	37394	160511_QHF_FH_JSI9i_1	69.133	61.772			0.86059	0.84479	35.168	2	1	Median	0.79599	0.6588	NaN	1	1	Median	0.93043	1.0833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67422000	40088000	27334000	27218000	15384000	11833000	40204000	24703000	15501000	0	0	0	0	0	0	2871	313	2706	17623;17624;17625;17626;17627;17628	23992;23993;23994;23995;23996;23997	23997			6	
AKPSELMPK	2	Unmodified	999.5423	0.54230231	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	20.694	20.297	2	0.05774	16501	160511_QHF_FH_JSI12i_3	52.255	48.118			1.5752	1.5342	32.101	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71621	0.82242	NaN	1	0	Median	1.3437	1.2642	NaN	1	0	Median	1.5752	1.5409	NaN	1	0	Median	84132000	39958000	44173000	0	0	0	11277000	6628700	4648500	29148000	14741000	14407000	43706000	18589000	25118000	2872	2302	2707	17629;17630;17631	23998	23998			1	
AKPSPAPPSTTTAPDASGPQK	2	Unmodified	2005.0116	0.011633904	1502	P40855	PEX19	Peroxisomal biogenesis factor 19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.894	4	2	4							3	3	2	2	23.496	22.832	3	1.4421E-07	19454	160511_QHF_FH_JSI9i_2	89.859	81.499			0.89484	0.97782	21.784	10	1	Median	0.82786	0.68986	20.923	3	1	Median	0.91735	1.1289	5.9284	3	0	Median	0.95079	0.91009	22.323	2	0	Median	0.83468	0.85778	23.441	2	0	Median	655280000	354960000	300320000	90638000	49864000	40773000	164060000	89181000	74882000	233470000	118510000	114960000	167120000	97404000	69714000	2873	1502	2708	17632;17633;17634;17635;17636;17637;17638;17639;17640;17641	23999;24000;24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011;24012;24013;24014;24015;24016;24017	24013			19	
AKPSPHPIK	2	Unmodified	973.5709	0.57090032	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By matching		By matching	3	0			3							1	1		1	5.9768	5.6689	3	0.006857	3651	160511_QHF_FH_JSI9i_3	43.308	39.736			0.85585	0.76713	15.025	3	0	Plateau	1.1715	0.97973	NaN	1	0	Median	0.85585	1.0084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74714	0.76713	NaN	1	0	Median	504510000	295740000	208770000	103170000	42628000	60541000	96118000	46471000	49647000	0	0	0	305220000	206640000	98580000	2874	5410	2709	17642;17643;17644	24018	24018			1	
AKPSYLIDK	2	Unmodified	1033.5808	0.5807963	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	23.831	23.093	2;3	6.49E-05	18606	160511_QHF_FH_JSI9i_3	79.201	65.848			1.0571	0.99468	24.222	7	0	Median	1.7777	1.4383	0.82929	2	0	Median	0.74758	0.85567	5.0396	2	0	Median	1.1256	1.0496	7.5987	2	0	Median	0.81395	0.81868	NaN	1	0	Median	857500000	396790000	460720000	235680000	100300000	135380000	223890000	124630000	99263000	235390000	97269000	138120000	162540000	74590000	87954000	2875	5507	2710	17645;17646;17647;17648;17649;17650;17651;17652	24019;24020;24021;24022;24023;24024;24025;24026;24027;24028;24029;24030	24026			11	
AKPTTVR	1	Acetyl (K)	813.47085	0.47085192	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.687						1	3	2			2	1	3	16.048	7.597	2	0.00080751	6417	160513_QHF_FH_JSI10Kac_4	115.46	40.942			0.80897	0.89693	5.7592	6	0	Median	NaN	NaN	NaN	0	0	Median	0.7255	0.85685	7.2361	2	0	Median	0.94859	0.92082	NaN	1	0	Median	0.80999	0.89205	5.0901	3	0	Median	123570000	67063000	56504000	0	0	0	39279000	21612000	17667000	48426000	27718000	20707000	35863000	17734000	18129000	2876	3508	2711	17653;17654;17655;17656;17657;17658	24031;24032;24033;24034;24035;24036	24031	2874		6	
AKPVATAPIPGTPWCVVWTGDER	1	Unmodified	2507.2631	0.26311434	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		87.565	87.565	3	2.8181E-06	78149	160511_QHF_FH_JSI11i_3	67.979	64.74			0.89162	0.84143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89162	0.84143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22360000	11989000	10370000	0	0	0	0	0	0	22360000	11989000	10370000	0	0	0	2877	203	2712	17659	24037;24038;24039	24038			3	
AKPVGSPLFK	2	Unmodified	1042.6175	0.61751616	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	30.668	29.728	3	0.00084824	24475	160511_QHF_FH_JSI9i_3	62.466	41.596			1.1011	0.91662	61.171	3	2	Plateau	1.1011	0.91662	NaN	1	0	Median	1.0879	1.2614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0315	2.9903	NaN	1	1	Median	141840000	65941000	75896000	72258000	35420000	36838000	42589000	22697000	19891000	0	0	0	26990000	7823500	19167000	2878	3849	2713	17660;17661;17662	24040;24041;24042	24041			3	
AKPVLEDLR	1	Unmodified	1039.6026	0.60259438	58	CON__P15497			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	29.905	29.203	2;3	1.2606E-05	24199	160511_QHF_FH_JSI12i_3	102.52	66.19		+	0.80753	0.7858	16.145	8	0	Median	1.0352	0.84691	9.8506	2	0	Median	0.52041	0.59853	3.3719	2	0	Median	0.78031	0.74664	9.2544	2	0	Median	0.82103	0.83492	9.3166	2	0	Median	1830400000	986060000	844330000	218060000	112010000	106050000	440090000	307780000	132310000	699470000	312470000	387000000	472760000	253800000	218960000	2879	58	2714	17663;17664;17665;17666;17667;17668;17669;17670	24043;24044;24045;24046;24047;24048;24049;24050;24051;24052;24053;24054	24052			12	
AKPVPWVEK	2	Unmodified	1052.6019	0.6018661	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	29.828	28.905	2;3	0.0010659	23834	160511_QHF_FH_JSI12i_3	71.349	49.886			0.37458	0.37064	26.926	6	6	Median	0.55373	0.43997	0.54231	2	2	Median	0.34347	0.40089	34.804	2	2	Median	0.30935	0.28859	NaN	1	1	Median	0.26551	0.26654	NaN	1	1	Median	3323700000	2485800000	837860000	622910000	402540000	220370000	490570000	347860000	142710000	823970000	643640000	180330000	1386200000	1091800000	294450000	2880	1428	2715	17671;17672;17673;17674;17675;17676	24055;24056;24057;24058;24059;24060;24061	24061			7	
AKPVTTNLK	2	Unmodified	970.58113	0.58113065	3491	Q8N0T1	C8orf59	Uncharacterized protein C8orf59	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			7							2	2	1	2	10.516	10.159	2;3	0.00062357	7468	160511_QHF_FH_JSI12i_3	68.893	47.429			0.75654	0.88812	25.368	7	1	Median	1.1579	0.92256	5.3814	2	0	Median	0.5822	0.69237	39.599	2	1	Median	1.0004	0.952	NaN	1	0	Median	0.64504	0.65973	21.46	2	0	Median	496110000	268740000	227370000	143720000	66206000	77512000	104400000	63713000	40683000	61128000	29773000	31355000	186870000	109050000	77820000	2881	3491	2716	17677;17678;17679;17680;17681;17682;17683	24062;24063;24064;24065	24065			4	
AKPYEGSILEADCDILIPAASEK	2	Unmodified	2489.236	0.23595611	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	80.855	80.743	3	9.8091E-08	70106	160511_QHF_FH_JSI12i_3	72.399	61.256			1.0927	1.039	21.468	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97188	0.89269	NaN	1	0	Median	1.2286	1.2094	NaN	1	0	Median	86580000	42351000	44229000	0	0	0	0	0	0	40903000	21576000	19327000	45677000	20775000	24902000	2882	762	2717	17684;17685	24066;24067	24067			2	
AKQEELEAALQR	1	Unmodified	1384.731	0.73104237	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	3	4	31.81	31.198	2;3	1.1547E-15	26776	160511_QHF_FH_JSI11i_3	167.18	121.18		+	0.93772	0.91577	23.268	10	1	Median	1.4361	1.2313	NaN	1	0	Median	0.61662	0.75591	1.5061	2	0	Median	0.90264	0.90688	23.924	3	1	Median	1.0443	1.1162	11.142	4	0	Median	1722600000	864870000	857710000	88975000	32887000	56088000	325750000	212670000	113080000	730640000	359830000	370800000	577220000	259480000	317740000	2883	53;71	2718	17686;17687;17688;17689;17690;17691;17692;17693;17694;17695	24068;24069;24070;24071;24072;24073;24074;24075;24076;24077;24078;24079	24069			11	
AKQEPEVNGGSGDAVPSGNEVSENMEEEAENQAESR	1	Unmodified	3773.6195	0.61946219	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	57.058	56.452	3;4	1.268E-46	50714	160511_QHF_FH_JSI11i_1	148.36	143.55			1.0338	1.0418	21.639	10	3	Median	1.6573	1.4069	47.172	2	1	Median	0.8748	1.0439	11.361	3	1	Median	1.0701	1.0397	8.3392	3	1	Plateau	1.0255	1.0549	0.73867	2	0	Median	777460000	363220000	414240000	93496000	38036000	55461000	283850000	147490000	136350000	205560000	83636000	121930000	194560000	94060000	100500000	2884	1649	2719	17696;17697;17698;17699;17700;17701;17702;17703;17704;17705	24080;24081;24082;24083;24084;24085;24086;24087;24088;24089;24090;24091;24092;24093;24094;24095;24096	24081			17	
AKQGYVIYR	1	Acetyl (K)	1138.6135	0.61349341	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		45.613	35.236	2	6.3384E-11	19912	160513_QHF_FH_JSI11Kac_5	151.27	72.153			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5208400	5208400	0	0	0	0	0	0	0	5208400	5208400	0	0	0	0	2885	1951	2720	17706	24097	24097	1965		1	
AKSIVFHR	1	Acetyl (K)	998.56615	0.56614929	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	36.763	27.707	2;3	0.001115	14665	160513_QHF_FH_JSI12Kac_6	82.749	57.874			0.672	0.72519	48.97	7	0	Median	1.3555	1.1559	NaN	1	0	Median	1.0109	1.1765	17.834	2	0	Median	0.41264	0.40184	15.942	2	0	Median	0.64169	0.70263	4.4691	2	0	Median	126500000	72293000	54209000	7967100	3733800	4233300	61813000	31607000	30205000	35017000	23464000	11553000	21705000	13488000	8216900	2886	2021	2721	17707;17708;17709;17710;17711;17712;17713	24098;24099;24100;24101;24102;24103	24102	2057		6	
AKTCTFILR	1	Acetyl (K)	1150.6169	0.61686423	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		60.862	49.966	2	0.00013087	27271	160513_QHF_FH_JSI11Kac_5	99.802	45.645			0.37101	0.37169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37101	0.37169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7966500	6349900	1616600	0	0	0	0	0	0	7966500	6349900	1616600	0	0	0	2887	4321	2722	17714	24104	24104	3127		1	
AKVDEFPLCGHMVSDEYEQLSSEALEAAR	1	Unmodified	3280.5016	0.50164264	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	95.359	95.362	3;4	6.0859E-16	85075	160511_QHF_FH_JSI11i_3	96.44	94.187			0.95899	0.87879	46.68	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72234	0.69194	15.009	3	1	Median	1.486	1.5886	35.518	2	1	Median	293240000	157700000	135540000	0	0	0	0	0	0	260620000	147550000	113070000	32625000	10157000	22468000	2888	1292	2723	17715;17716;17717;17718;17719	24105;24106;24107;24108;24109;24110;24111;24112;24113	24107			8	
AKVEFNIR	1	Unmodified	975.55016	0.55016488	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.379	29.974	3	0.015874	24413	160511_QHF_FH_JSI9i_3	46.39	24.304			0.90024	0.73373	NaN	1	1	Median	0.90024	0.73373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60236000	32526000	27711000	60236000	32526000	27711000	0	0	0	0	0	0	0	0	0	2889	3609	2724	17720	24114	24114			1	
AKWDAWNALGSLPK	2	Unmodified	1555.8147	0.81471242	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	79.838	79.102	2;3	8.3903E-09	68171	160511_QHF_FH_JSI12i_3	151.74	128.42			1.1053	1.0281	19.827	8	1	Median	1.2304	1.0059	4.9691	2	1	Median	0.63187	0.73739	23.641	2	0	Median	1.0748	1.0311	2.2807	2	0	Median	1.1344	1.1465	0.39489	2	0	Median	1242900000	612070000	630790000	137970000	57805000	80162000	287270000	191930000	95342000	290510000	132880000	157630000	527110000	229450000	297660000	2890	538	2725	17721;17722;17723;17724;17725;17726;17727;17728	24115;24116;24117;24118;24119;24120;24121;24122;24123;24124;24125;24126;24127;24128;24129;24130	24129			16	
AKWDAWNALGSLPK	2	Acetyl (K)	1597.8253	0.8252771	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	88.039	78.597	2	6.7474E-07	42095	160513_QHF_FH_JSI12Kac_6	154.47	131.75			8.7068	9.2097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.7068	9.2097	NaN	1	1	Median	129410000	14959000	114450000	0	0	0	0	0	0	0	0	0	129410000	14959000	114450000	2891	538	2725	17729	24131	24131	276		1	
AKWDAWNELK	2	Unmodified	1259.6299	0.62987176	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			20							8	8	2	2	55.773	54.557	2;3	3.2051E-13	47539	160511_QHF_FH_JSI11i_3	159.83	124.38			1.0038	0.92507	23.368	17	4	Median	1.1062	0.89179	13.621	7	1	Median	0.86852	0.99398	35.096	6	3	Median	0.98006	0.9241	0.14755	2	0	Median	0.98736	1.0204	4.2961	2	0	Median	11739000000	6095200000	5643800000	2372200000	1176700000	1195400000	3328100000	1596000000	1732100000	2499900000	1246600000	1253300000	3539000000	2076000000	1463000000	2892	863	2726	17730;17731;17732;17733;17734;17735;17736;17737;17738;17739;17740;17741;17742;17743;17744;17745;17746;17747;17748;17749	24132;24133;24134;24135;24136;24137;24138;24139;24140;24141;24142;24143;24144;24145;24146;24147;24148;24149;24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165;24166;24167;24168;24169;24170;24171;24172;24173;24174;24175;24176;24177;24178;24179;24180;24181;24182	24134			51	
AKWDAWNELK	2	Acetyl (K)	1301.6404	0.64043645	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.686							4	9	4	4	4	4	5	78.404	68.384	2	3.486E-24	34095	160513_QHF_FH_JSI10Kac_5	175.86	117.9			0.99729	0.94832	199.51	17	3	Median	1.0994	0.94518	30.799	4	0	Median	0.80885	0.91177	6.6631	4	0	Median	1.0805	1.0449	427.01	4	2	Median	0.99292	1.0217	119.81	5	1	Median	7800400000	4089600000	3710800000	1596600000	765980000	830650000	2684000000	1568600000	1115400000	2009200000	1030500000	978760000	1510500000	724480000	786020000	2893	863	2726	17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761;17762;17763;17764;17765;17766	24183;24184;24185;24186;24187;24188;24189;24190;24191;24192;24193;24194;24195;24196;24197;24198;24199;24200;24201;24202;24203;24204;24205;24206;24207;24208;24209;24210;24211	24203	551		29	
AKWGEGDPR	1	Acetyl (K);Acetyl (Protein N-term)	1098.5094	0.50942227	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	12	0.707				1	2	1					1	2	1	48.378	39.107	2	0.041762	17377	160513_QHF_FH_JSI10Kac_2	31.934	27.797			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2894	694	2727	17767;17768;17769;17770	24212;24213;24214;24215;24216	24213			5	
AKWHLGIR	1	Acetyl (K)	1021.5821	0.58213371	2356;1826	P54646;Q13131	PRKAA2;PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-2;5'-AMP-activated protein kinase catalytic subunit alpha-1	no	no	1	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	53.247	44.042	3	0.0081867	24178	160513_QHF_FH_JSI10Kac_6	48.794	27.112			1.0079	1.1589	54.997	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4342	1.7097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7083	0.78551	NaN	1	0	Median	12623000	6244500	6378200	0	0	0	8465600	3542800	4922800	0	0	0	4157100	2701700	1455400	2895	1826;2356	2728	17771;17772;17773	24217;24218	24218	1842		2	
AKWYPEVR	1	Acetyl (K)	1089.5607	0.56072956	2045	P63000;P60763	RAC1;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3	yes	no	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		58.435	48.132	2	0.0077635	26347	160513_QHF_FH_JSI11Kac_5	81.296	53.122			0.097313	0.0947	15.757	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.097313	0.0947	15.757	2	2	Median	NaN	NaN	NaN	0	0	Median	16322000	14581000	1741400	0	0	0	0	0	0	16322000	14581000	1741400	0	0	0	2896	2045	2729	17774;17775	24219;24220	24220	2109		2	
AKYELLNAGYK	2	Unmodified	1268.6765	0.6764876	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.399	38.219	3	0.0337	32537	160511_QHF_FH_JSI12i_3	35.006	18.233			0.18929	0.19216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18929	0.19216	NaN	1	1	Median	119090000	102640000	16445000	0	0	0	0	0	0	0	0	0	119090000	102640000	16445000	2897	207	2730	17776	24221	24221			1	
AKYHGNVMLLR	1	Acetyl (K)	1342.718	0.71797526	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	50.904	41.738	2;3	4.5732E-11	22770	160513_QHF_FH_JSI11Kac_6	140.45	95.365			0.6029	0.63865	95.953	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2246	1.4452	1.4309	2	0	Median	0.28649	0.2745	5.3634	2	0	Median	NaN	NaN	NaN	0	0	Median	191150000	126230000	64923000	0	0	0	68971000	29542000	39429000	122180000	96686000	25494000	0	0	0	2898	1650	2731	17777;17778;17779;17780;17781	24222;24223;24224;24225;24226	24223	1661		5	
AKYPDYEVTWANDGY	1	Unmodified	1790.7788	0.77878042	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		66.356	65.795	2	0.0070574	57405	160511_QHF_FH_JSI11i_2	93.839	78.637			1.2031	1.2127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2031	1.2127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18741000	10517000	8224000	0	0	0	0	0	0	18741000	10517000	8224000	0	0	0	2899	4971	2732	17782	24227;24228	24227			2	
AKYPIVGYTAR	1	Acetyl (K)	1279.6925	0.69247202	5428	Q9UMX5	NENF	Neudesin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		61.989	51.082	2	0.018085	27865	160513_QHF_FH_JSI11Kac_5	51.092	32.78			0.38436	0.38624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38436	0.38624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8226600	5220400	3006200	0	0	0	0	0	0	8226600	5220400	3006200	0	0	0	2900	5428	2733	17783	24229	24229	3408		1	
AKYPSLGQK	2	Acetyl (K)	1032.5604	0.56039521	373	O43768	ENSA	Alpha-endosulfine	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	39.383	29.656	2	0.025646	17674	160513_QHF_FH_JSI12Kac_4	49.418	15.621			0.48412	0.51143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48412	0.51143	NaN	1	0	Median	2337800	1415300	922460	0	0	0	0	0	0	0	0	0	2337800	1415300	922460	2901	373	2734	17784	24230	24230	189		1	
ALAAAGYDVEK	1	Unmodified	1106.5608	0.56078914	969;1099;1098	P10412;Q02539;P22492;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1t;Histone H1.2;Histone H1.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.16	6.25	5	4	4		1	5	3	4	5	8	7	7	9	39.288	33.657	2	7.6448E-27	19453	160513_QHF_FH_JSI12Kac_4	180.8	137.55			0.89714	0.96083	32.088	27	2	Median	0.98687	0.81716	71.472	5	1	Median	0.77789	0.91812	10.695	7	0	Median	1.1853	1.1686	10.932	7	0	Median	0.87067	0.92489	16.05	8	1	Median	43050000000	17897000000	25152000000	12056000000	5082300000	6974000000	10543000000	4988300000	5554900000	11029000000	3405200000	7623800000	9421300000	4421600000	4999700000	2902	969;1099;1098	2735	17785;17786;17787;17788;17789;17790;17791;17792;17793;17794;17795;17796;17797;17798;17799;17800;17801;17802;17803;17804;17805;17806;17807;17808;17809;17810;17811;17812;17813;17814;17815	24231;24232;24233;24234;24235;24236;24237;24238;24239;24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252;24253;24254;24255;24256;24257;24258;24259;24260;24261;24262;24263;24264;24265;24266;24267;24268;24269;24270;24271;24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282;24283;24284;24285;24286;24287;24288;24289;24290;24291	24270			61	
ALAAAGYDVEKNNSR	1	Acetyl (K)	1619.7903	0.79034816	969;1099;1098	P10412;Q02539;P22492;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1t;Histone H1.2;Histone H1.3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.64						4	5	1			3	4	3	48.54	38.627	2;3	1.345E-23	20971	160513_QHF_FH_JSI10Kac_3	156.71	142.02			0.57729	0.62344	55.468	9	0	Median	NaN	NaN	NaN	0	0	Median	1.2133	1.4431	7.9669	3	0	Plateau	0.383	0.37912	0.4562	3	0	Plateau	0.57729	0.62344	7.2592	3	0	Median	48897000	30299000	18598000	0	0	0	17490000	8811600	8678400	17462000	13000000	4461400	13945000	8487100	5458300	2903	969;1099;1098	2736	17816;17817;17818;17819;17820;17821;17822;17823;17824;17825	24292;24293;24294;24295;24296;24297;24298;24299;24300;24301;24302;24303;24304;24305;24306	24305	733		15	
ALAAEMTDYFSR	0	Unmodified	1373.6286	0.62855113	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	69.258	68.33	2	0.00034497	58834	160511_QHF_FH_JSI12i_2	71.349	53.53			1.0493	1.0788	15.915	3	0	Median	1.534	1.3179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0493	1.0788	NaN	1	0	Median	0.90588	0.9624	NaN	1	0	Median	90253000	40817000	49436000	23690000	10056000	13634000	0	0	0	40192000	18907000	21285000	26371000	11854000	14517000	2904	3516	2737	17826;17827;17828	24307;24308;24309	24307			2	
ALAAFLK	1	Unmodified	732.45341	0.45341094	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.26	2	8	5					3	4	5	7	5	5	55.453	52.091	1;2	0.002611	45710	160511_QHF_FH_JSI9i_2	109.88	51.22			0.9624	1.0094	17.597	21	1	Median	0.95755	0.84674	24.029	5	0	Median	0.91812	1.0521	14.328	6	1	Median	0.9624	0.9524	12.451	5	0	Median	1.0336	1.0733	13.562	5	0	Median	28699000000	11538000000	17161000000	6695900000	2323500000	4372500000	5920600000	2772600000	3147900000	6247500000	2602000000	3645600000	9835300000	3840200000	5995100000	2905	1483	2738	17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850	24310;24311;24312;24313;24314;24315;24316;24317;24318;24319;24320;24321;24322;24323;24324;24325;24326;24327;24328;24329;24330;24331;24332;24333;24334;24335;24336;24337;24338;24339;24340;24341;24342;24343;24344;24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358;24359;24360	24338			51	
ALAAFLKK	2	Unmodified	860.54837	0.54837396	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			41.12	39.599	3	0.0057779	33035	160511_QHF_FH_JSI10i_3	51.854	33.124			0.41806	0.1165	89.112	4	4	Linear	0.4283	0.34417	123.74	2	2	Median	0.41806	0.49223	85.033	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108070000	78042000	30027000	74147000	55750000	18397000	33922000	22292000	11630000	0	0	0	0	0	0	2906	1483	2739	17851;17852;17853;17854	24361;24362;24363;24364	24361			4	
ALAAFLKK	2	Acetyl (K)	902.55894	0.55893865	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	1	0	0	1	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	67.666	58.624	2	0.04287	32230	160513_QHF_FH_JSI10Kac_6	79.597	54.674			0.70901	0.67521	73.02	4	0	Median	0.99283	0.86212	NaN	1	0	Median	1.4128	1.6642	NaN	1	0	Median	0.31387	0.29815	NaN	1	0	Median	0.50633	0.52882	NaN	1	0	Median	214170000	151460000	62713000	12908000	7013600	5894400	36384000	15233000	21152000	130860000	104890000	25972000	34020000	24326000	9694700	2907	1483	2739	17855;17856;17857;17858	24365	24365			1	
ALAAGADSPK	1	Unmodified	899.47125	0.47124585	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	12.194	11.735	2	0.0022681	9148	160511_QHF_FH_JSI9i_1	60.892	45.741			0.98142	0.88702	16.75	3	1	Plateau	0.94774	0.76733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98142	0.93761	NaN	1	0	Median	0.65825	0.67226	NaN	1	1	Median	177090000	95280000	81806000	49073000	23461000	25611000	0	0	0	62108000	29625000	32484000	65905000	42194000	23711000	2908	2836	2740	17859;17860;17861	24366;24367;24368	24368			3	
ALAAGGVGSIVR	0	Unmodified	1069.6244	0.62439245	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.21			5					3	2	1	3	4	2	51.184	45.212	2	4.866E-05	37901	160511_QHF_FH_JSI10i_3	122.28	67.732			0.80898	0.86517	26.071	9	3	Median	1.3264	1.0782	NaN	1	0	Median	0.72233	0.85485	30.23	3	0	Median	0.97639	0.8964	28.772	3	2	Plateau	0.7768	0.83097	12.708	2	1	Median	1888900000	1017900000	871050000	365530000	157520000	208010000	529420000	278480000	250940000	380160000	204040000	176120000	613800000	377820000	235980000	2909	296	2741	17862;17863;17864;17865;17866;17867;17868;17869;17870;17871	24369;24370;24371;24372;24373;24374;24375;24376;24377;24378;24379;24380;24381;24382;24383	24371			15	
ALAAGGYDVEK	1	Unmodified	1092.5451	0.54513908	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.08	7	4				6	6			3	5	8	7	36.044	30.42	2	1.1407E-23	27493	160511_QHF_FH_JSI9i_1	180.8	171.21			0.76266	0.80114	104.85	23	12	Median	1.2049	0.95403	20.342	3	1	Median	0.89305	1.0948	126.02	5	1	Median	0.66996	0.65927	95.888	8	5	Median	0.60345	0.65971	116.84	7	5	Median	8317300000	4445700000	3871700000	1261600000	601120000	660450000	1621300000	892760000	728560000	3359000000	1691500000	1667500000	2075400000	1260300000	815120000	2910	1097	2742	17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894	24384;24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398;24399;24400;24401;24402;24403;24404;24405;24406;24407;24408;24409;24410;24411;24412;24413;24414;24415;24416;24417;24418	24408			35	
ALAAGGYDVEKNNSR	1	Acetyl (K)	1605.7747	0.7746981	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				3	1	2	45.726	35.981	2	1.2547E-06	20732	160513_QHF_FH_JSI12Kac_4	112.13	98.219			0.9157	0.99898	40.701	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2415	1.4093	3.021	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66169	0.69807	5.047	2	0	Median	10197000	5664600	4532300	0	0	0	4210300	1782600	2427700	1489000	1489000	0	4497700	2393000	2104600	2911	1097	2743	17895;17896;17897;17898;17899;17900	24419;24420;24421;24422;24423;24424;24425	24424	947		6	
ALAAHPWK	1	Unmodified	892.49192	0.49192172	1485	P39210	MPV17	Protein Mpv17	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			6							3	2		1	22.309	21.25	2;3	0.00070761	17135	160511_QHF_FH_JSI9i_3	75.854	57.124			1.4607	1.3865	39.144	6	1	Median	1.7125	1.3658	50.008	3	1	Median	1.1975	1.3528	6.7249	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7775	1.8325	NaN	1	0	Median	571100000	254280000	316810000	356160000	157910000	198250000	173860000	82249000	91609000	0	0	0	41075000	14125000	26951000	2912	1485	2744	17901;17902;17903;17904;17905;17906	24426;24427;24428;24429;24430;24431	24428			6	
ALAALEEHVADENLK	1	Unmodified	1621.8312	0.83115034	2878	Q5BKU9	OXLD1	Oxidoreductase-like domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	54.147	53.568	2	1.2259E-05	45941	160511_QHF_FH_JSI12i_3	85.813	52.404			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2913	2878	2745	17907;17908	24432;24433	24433			2	
ALAAPAAEEK	1	Unmodified	969.51311	0.51311067	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.51	4	5	4		3	4	3			4	6	8	5	22.259	17.527	2	2.5914E-09	15427	160511_QHF_FH_JSI9i_1	133.57	119.42			0.96678	1.0258	11.6	20	2	Median	1.3472	1.1358	9.2361	4	1	Median	0.95269	1.1371	8.9016	6	0	Median	0.92764	0.93304	5.3882	5	1	Median	0.94258	1.0151	12.493	5	0	Median	20816000000	9826400000	10989000000	4969100000	2135700000	2833500000	5487800000	2608500000	2879300000	4801100000	2568300000	2232700000	5557800000	2513900000	3044000000	2914	2172	2746	17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931	24434;24435;24436;24437;24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450;24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465;24466	24456			33	
ALAAQNIVEDMEQR	0	Unmodified	1586.7723	0.77225526	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	3	2	1	70.161	69.335	2;3	1.0568E-29	61607	160511_QHF_FH_JSI10i_2	224.42	214.09			0.9648	1.0447	5.7598	6	1	Median	1.2098	1.0635	NaN	1	0	Median	0.85126	1.041	8.6141	2	1	Median	1.0809	1.0852	7.8822	2	0	Median	0.91929	1.023	NaN	1	0	Median	557810000	275600000	282210000	103230000	44328000	58898000	138540000	78844000	59694000	210010000	97335000	112670000	106040000	55090000	50950000	2915	2728	2747	17932;17933;17934;17935;17936;17937;17938;17939	24467;24468;24469;24470;24471;24472;24473;24474;24475;24476;24477	24475			11	
ALAAVPSAGSVQR	0	Unmodified	1225.6779	0.67788459	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.4	0.49	3	2								1	1	2	1	36.552	36.015	2	0.00048977	30824	160511_QHF_FH_JSI11i_2	70.1	40.627			0.84373	0.82964	5.9515	5	0	Median	0.88673	0.76357	NaN	1	0	Median	0.6708	0.81777	NaN	1	0	Median	0.84716	0.84582	2.7313	2	0	Median	0.83528	0.89431	NaN	1	0	Median	256880000	147430000	109450000	43393000	25351000	18042000	66171000	37363000	28809000	103110000	60801000	42311000	44209000	23919000	20290000	2916	2506	2748	17940;17941;17942;17943;17944	24478;24479	24479			2	
ALADENEFVR	0	Unmodified	1162.5619	0.56185177	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	3.83	6	3					1			2	3	2	3	41.126	40.406	2	5.2838E-06	36493	160511_QHF_FH_JSI11i_1	108.98	76.137			1.2579	1.3253	25.367	7	3	Median	1.3524	1.1243	37.768	2	1	Median	0.99479	1.1781	39.994	2	1	Median	1.1234	1.1165	24.592	2	0	Median	1.2579	1.3253	NaN	1	1	Median	1172400000	541660000	630690000	230880000	87829000	143050000	321590000	160730000	160860000	372830000	169530000	203300000	247060000	123570000	123490000	2917	3860	2749	17945;17946;17947;17948;17949;17950;17951;17952;17953;17954	24480;24481;24482;24483;24484;24485;24486;24487;24488;24489;24490	24480			11	
ALADENEFVRDTALR	0	Unmodified	1718.8588	0.85876208	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	56.721	55.987	3	0.00041919	49461	160511_QHF_FH_JSI10i_2	65.472	53.495			1.3259	1.2383	14.401	5	4	Median	1.4985	1.279	12.01	2	2	Median	1.0317	1.2383	NaN	1	0	Median	1.3259	1.3393	NaN	1	1	Median	0.95152	0.96423	NaN	1	1	Median	599260000	289040000	310230000	171660000	72624000	99035000	148490000	64831000	83662000	109580000	54057000	55526000	169530000	97524000	72006000	2918	3860	2750	17955;17956;17957;17958;17959	24491;24492;24493;24494;24495;24496	24495			6	
ALADHSMAQTPR	0	Unmodified	1296.6245	0.62446881	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	3	4	2	16.931	16.574	2;3	5.5713E-53	13303	160511_QHF_FH_JSI12i_3	225.01	196.61			1.1667	1.1696	13.961	7	2	Median	1.5429	1.2913	NaN	1	1	Median	1.1154	1.3293	1.9427	2	1	Median	1.2397	1.1576	1.4646	2	0	Median	0.93913	0.96502	0.062351	2	0	Median	1174600000	570130000	604520000	35394000	13013000	22381000	99751000	43413000	56338000	493060000	219980000	273080000	546450000	293720000	252730000	2919	899	2751	17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970	24497;24498;24499;24500;24501;24502;24503;24504;24505;24506;24507;24508;24509;24510;24511	24511			15	
ALADHSMAQTPR	0	Oxidation (M)	1312.6194	0.61938343	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	16.636	16.687	2;3	0.0060085	13625	160511_QHF_FH_JSI11i_3	42.446	32.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12324000	12324000	0	0	0	0	0	0	0	0	0	0	12324000	12324000	0	2920	899	2751	17971;17972;17973	24512;24513;24514	24512		474	3	
ALADILSESLHSLATSLPR	0	Unmodified	1993.0844	0.084404917	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.16	102.16	3	5.2836E-14	91286	160511_QHF_FH_JSI11i_3	120.31	111.21			0.832	0.77673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.832	0.77673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96779000	55698000	41081000	0	0	0	0	0	0	96779000	55698000	41081000	0	0	0	2921	303	2752	17974	24515	24515			1	
ALADVATVLGR	0	Unmodified	1084.6241	0.6240581	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.1	3	4	2					2		1	2	4	4	68.247	65.834	2	5.0363E-07	57147	160511_QHF_FH_JSI12i_3	138.08	101.06			1.0056	1.0232	43.064	11	2	Median	1.1529	0.97754	NaN	1	0	Median	0.8214	0.96622	14.556	2	0	Median	0.99137	0.98009	7.9563	4	1	Median	1.0338	1.101	69.046	4	1	Median	1576200000	787660000	788520000	162020000	64038000	97987000	198900000	115090000	83811000	605490000	322530000	282960000	609760000	286010000	323760000	2922	3840	2753	17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985	24516;24517;24518;24519;24520;24521;24522;24523;24524;24525;24526;24527;24528;24529;24530;24531;24532;24533	24533			17	
ALADVEVTYTVQR	0	Unmodified	1463.762	0.76200815	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	2	1	56.854	56.364	2	1.62E-09	49374	160511_QHF_FH_JSI9i_2	109.59	83.471			0.92679	1.0444	4.3672	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86261	1.0444	NaN	1	0	Median	1.0025	0.97411	NaN	1	0	Median	0.99574	1.0557	NaN	1	0	Median	148670000	76607000	72066000	0	0	0	65357000	32736000	32621000	34036000	17364000	16672000	49280000	26506000	22773000	2923	1787	2754	17986;17987;17988;17989;17990;17991;17992	24534;24535;24536;24537;24538;24539;24540;24541	24538			8	
ALADYIR	0	Unmodified	820.4443	0.44430282	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.788	5	7	7							3	6	5	5	44.469	43.639	2	0.0040196	38021	160511_QHF_FH_JSI12i_3	100.74	0			1.0295	1.028	9.3061	19	1	Median	1.284	1.0922	15.377	3	0	Median	0.86807	1.0321	11.397	6	0	Median	1.0474	1.028	7.5768	5	0	Median	0.94435	1.023	4.6718	5	1	Median	3718100000	1814800000	1903300000	289350000	129000000	160350000	799400000	411230000	388170000	873450000	399120000	474340000	1755900000	875470000	880480000	2924	4390	2755	17993;17994;17995;17996;17997;17998;17999;18000;18001;18002;18003;18004;18005;18006;18007;18008;18009;18010;18011	24542;24543;24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564;24565;24566;24567;24568;24569	24569			28	
ALAEDATVYEYDSIYDEMQK	1	Unmodified	2353.0308	0.030773946	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.666	86.18	3	1.97E-05	78492	160511_QHF_FH_JSI12i_1	85.937	71.252			0.89587	0.95744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89587	0.95744	NaN	1	1	Median	22925000	11333000	11592000	0	0	0	0	0	0	0	0	0	22925000	11333000	11592000	2925	4632	2756	18012	24570	24570			1	
ALAEEVEQVHR	0	Unmodified	1279.6521	0.65206377	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	4	2	28.372	28.094	2;3	6.1717E-24	23533	160511_QHF_FH_JSI12i_3	169.65	152.29			0.86726	0.87341	34.394	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2056	1.4797	NaN	1	1	Median	0.74463	0.71129	32.458	2	0	Median	0.83425	0.84047	5.4372	2	0	Median	302440000	149810000	152630000	0	0	0	82929000	25695000	57235000	110960000	67095000	43867000	108550000	57023000	51523000	2926	4360	2757	18013;18014;18015;18016;18017;18018;18019	24571;24572;24573;24574;24575;24576;24577;24578;24579;24580;24581;24582	24579			12	
ALAEGQQR	0	Unmodified	871.45118	0.45117911	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		5.9003	5.7952	2	0.013171	3794	160511_QHF_FH_JSI10i_1	51.787	31.232			0.88817	0.87172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88817	0.87172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138420000	78774000	59650000	0	0	0	0	0	0	138420000	78774000	59650000	0	0	0	2927	3100	2758	18020;18021	24583;24584	24584			2	
ALAEGVLLR	0	Unmodified	940.57057	0.57056597	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.79		4	1					2		1	2	1	3	54.468	50.82	2	1.4042E-06	43863	160511_QHF_FH_JSI11i_2	132.57	62.568			0.90064	1.0204	16.762	7	0	Median	1.4354	1.2273	NaN	1	0	Median	0.85186	1.0181	0.31395	2	0	Median	0.86321	0.87547	NaN	1	0	Median	1.1074	1.1332	19.64	3	0	Median	1162700000	585090000	577610000	175950000	80491000	95460000	246330000	137410000	108920000	258380000	134960000	123430000	482040000	232230000	249810000	2928	1629	2759	18022;18023;18024;18025;18026;18027;18028	24585;24586;24587;24588;24589;24590;24591	24588			7	
ALAEIAK	1	Unmodified	714.42759	0.42759012	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.53	3	5					3			3	3	3	2	24.709	21.649	2	0.0045974	13850	160513_QHF_FH_JSI11Kac_4	97.068	20.221			1.1868	1.0138	33.831	11	6	Median	1.1868	0.99137	28.623	3	3	Median	0.86805	1.0138	31.03	3	1	Median	1.1893	1.1791	52.766	3	1	Median	1.0544	1.1592	20.824	2	1	Median	3059000000	1445700000	1613300000	973000000	470870000	502140000	783860000	373690000	410170000	849760000	394410000	455350000	452360000	206700000	245660000	2929	1222	2760	18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039	24592;24593;24594;24595;24596;24597;24598;24599;24600;24601;24602;24603;24604	24596			13	
ALAELFGLLVK	1	Unmodified	1172.7169	0.71689585	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	100.01	97.143	2	7.8292E-38	91145	160511_QHF_FH_JSI11i_3	203.35	156.92			0.98777	0.97216	15.377	12	0	Median	1.1275	0.93036	20.067	3	0	Median	1.0315	1.1778	13.023	3	0	Plateau	1.0175	1.0158	8.3249	3	0	Median	0.8288	0.83307	22.328	3	0	Median	4255600000	2182700000	2072900000	654480000	319290000	335190000	718150000	345520000	372630000	1040600000	543150000	497400000	1842400000	974750000	867640000	2930	3290	2761	18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051	24605;24606;24607;24608;24609;24610;24611;24612;24613;24614;24615;24616;24617;24618;24619;24620;24621;24622;24623	24606			17	
ALAELTK	1	Unmodified	744.43815	0.43815481	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	1.75	0.433	1	3								1		2	1	25.015	24.318	2	0.027924	20227	160511_QHF_FH_JSI11i_2	53.351	19.836			1.2119	1.2388	40.091	4	0	Median	2.9875	2.5278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2119	1.2107	19.16	2	0	Median	1.013	1.1069	NaN	1	0	Median	255950000	104500000	151450000	49611000	16419000	33191000	0	0	0	144820000	57586000	87233000	61516000	30495000	31020000	2931	1892	2762	18052;18053;18054;18055	24624;24625	24624			2	
ALAENSGVK	1	Unmodified	887.47125	0.47124585	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.58	4	4	3			3	3			3	5	5	4	11.966	8.9183	2	4.6413E-07	6161	160513_QHF_FH_JSI11Kac_4	135	86.884			0.90589	0.96049	15.24	17	0	Median	1.2426	1.0399	10.983	3	0	Median	0.79241	0.94507	10.99	5	0	Median	0.91025	0.88901	26.745	5	0	Median	0.89327	0.97224	1.9402	4	0	Median	10934000000	5784600000	5149100000	2687500000	1240600000	1446900000	2841200000	1589700000	1251500000	2582800000	1411300000	1171500000	2822100000	1542900000	1279200000	2932	1721	2763	18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072	24626;24627;24628;24629;24630;24631;24632;24633;24634;24635;24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647;24648;24649;24650;24651;24652;24653	24639			28	
ALAESWNAAFLESSAK	1	Unmodified	1693.8312	0.83115034	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.615	2	8	3							3	2	4	4	78.396	77.756	2;3	1.8279E-65	68482	160511_QHF_FH_JSI9i_2	232.6	213.65			0.9804	0.95224	22.491	12	1	Median	1.0798	0.92742	3.3541	2	0	Median	0.94477	1.1322	28.275	2	0	Median	0.94065	0.91462	32.116	4	0	Median	0.97609	1.2133	19.721	4	1	Linear	970650000	514860000	455790000	131920000	65332000	66583000	178010000	109180000	68820000	360500000	184590000	175910000	300230000	155750000	144480000	2933	2660	2764	18073;18074;18075;18076;18077;18078;18079;18080;18081;18082;18083;18084;18085	24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664;24665;24666;24667;24668;24669;24670;24671;24672;24673	24662			20	
ALAETGIAVPSYYNPAAVNPMK	1	Unmodified	2276.1511	0.15110427	3227	Q7L4I2	RSRC2	Arginine/serine-rich coiled-coil protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				86.253	85.424	3	1.7062E-06	75980	160511_QHF_FH_JSI9i_1	70.094	62.101			2.13	1.7131	NaN	1	0	Median	2.13	1.7131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19661000	8041200	11620000	19661000	8041200	11620000	0	0	0	0	0	0	0	0	0	2934	3227	2765	18086	24674	24674			1	
ALAEYVVQQEGAK	1	Unmodified	1404.7249	0.72489436	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	45.587	44.759	2	2.0019E-15	39402	160511_QHF_FH_JSI10i_2	162.38	130.06			1.0292	1.0842	20.362	5	0	Median	1.0292	0.88706	NaN	1	0	Median	0.89359	1.1002	NaN	1	0	Median	1.0561	1.0842	NaN	1	0	Median	1.0604	1.1497	34.555	2	0	Median	282120000	147300000	134830000	41495000	20197000	21298000	66423000	39061000	27361000	94150000	44197000	49953000	80055000	43842000	36213000	2935	3790	2766	18087;18088;18089;18090;18091	24675;24676;24677;24678;24679;24680;24681;24682	24682			8	
ALAFEQLLK	1	Unmodified	1031.6015	0.60153174	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	80.526	79.73	2	0.0076494	68894	160511_QHF_FH_JSI12i_2	53.166	9.9201			0.85721	1.0121	12.382	4	0	Linear	0.8368	0.73506	NaN	1	0	Median	0.68029	0.80829	NaN	1	0	Median	0.97676	0.96522	NaN	1	0	Median	0.87812	0.91979	NaN	1	0	Median	71597000	35564000	36033000	12703000	5760500	6942500	15470000	9819700	5650800	26424000	12699000	13725000	16999000	7284500	9714700	2936	2691	2767	18092;18093;18094;18095	24683;24684	24683			2	
ALAFGDR	0	Unmodified	748.38679	0.38678794	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	25.492	25.476	2	0.010853	21244	160511_QHF_FH_JSI12i_3	73.039	46.93			0.87763	0.85957	12.301	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98516	0.93769	NaN	1	0	Median	0.78184	0.78796	NaN	1	0	Median	147230000	74561000	72667000	0	0	0	0	0	0	65010000	27563000	37447000	82218000	46998000	35220000	2937	2834	2768	18096;18097	24685	24685			1	
ALAFHPIEPVLITASEDHTLK	1	Unmodified	2301.2369	0.23688281	381	O43815	STRN	Striatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	3	2	83.722	83.368	3;4	3.3525E-18	72358	160511_QHF_FH_JSI12i_3	147.06	143.75			1.0216	1.0532	26.531	8	2	Median	1.3986	1.2209	NaN	1	0	Median	1.0813	1.3136	26.909	2	0	Median	0.96153	0.91344	24.888	3	2	Median	1.0424	1.0661	6.0678	2	0	Median	689510000	355460000	334050000	28310000	14082000	14228000	59227000	29967000	29260000	241770000	130040000	111730000	360200000	181370000	178830000	2938	381	2769	18098;18099;18100;18101;18102;18103;18104;18105	24686;24687;24688;24689;24690;24691;24692;24693;24694;24695;24696;24697	24694			12	
ALAFHPVEPVLVTASEDHTLK	1	Unmodified	2273.2056	0.20558268	2342	Q13033	STRN3	Striatin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.963	73.818	4	2.8773E-18	64078	160511_QHF_FH_JSI12i_3	148.24	143.03			0.99174	0.963	10.771	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95162	0.89238	NaN	1	0	Median	1.0336	1.0392	NaN	1	0	Median	333580000	194470000	139100000	0	0	0	0	0	0	141900000	81591000	60314000	191670000	112880000	78788000	2939	2342	2770	18106;18107	24698;24699;24700	24700			3	
ALAFYAVR	0	Unmodified	909.50724	0.50723743	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	61.439	52.176	2	0.0034579	28251	160513_QHF_FH_JSI11Kac_6	86.121	41.59			0.93884	0.99813	13.365	4	1	Median	1.3066	1.1298	NaN	1	0	Median	0.83108	0.95891	NaN	1	0	Median	1.0606	1.0389	NaN	1	0	Median	0.7859	0.8254	NaN	1	1	Median	155750000	80896000	74854000	38107000	18708000	19399000	57397000	31621000	25775000	41724000	20381000	21343000	18523000	10186000	8336500	2940	4165	2771	18108;18109;18110;18111;18112	24701;24702;24703;24704;24705	24702			5	
ALAGCDFLTISPK	1	Unmodified	1391.7119	0.71188683	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.94	6	4						1		1	3	3	4	73.567	72.96	2	7.9135E-05	64111	160511_QHF_FH_JSI11i_2	162.38	142.39			0.94344	1.0513	23.776	10	9	Median	1.3477	1.0929	NaN	1	1	Median	0.85996	1.0112	18.987	3	3	Median	0.78183	0.76387	7.7106	3	2	Median	1.1032	1.2321	12.232	3	3	Median	929680000	497290000	432380000	26695000	9936400	16758000	293050000	160970000	132080000	373960000	214270000	159700000	235970000	112120000	123850000	2941	1471	2772	18113;18114;18115;18116;18117;18118;18119;18120;18121;18122;18123	24706;24707;24708;24709;24710;24711;24712;24713;24714;24715;24716;24717	24715			12	
ALAGNPK	1	Unmodified	669.38097	0.38097428	4669	Q9H299	SH3BGRL3	SH3 domain-binding glutamic acid-rich-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							3	1	3	3	6.9191	6.5499	2	0.0078369	4321	160511_QHF_FH_JSI11i_2	74.517	74.517			0.60394	0.68009	52.168	9	2	Median	0.89295	0.73126	88.372	3	1	Median	0.54583	0.62485	NaN	1	0	Median	0.50479	0.50963	57.465	2	1	Median	0.80141	0.85026	25.878	3	0	Plateau	2948200000	1811000000	1137200000	1002900000	643620000	359270000	60653000	36540000	24113000	993790000	627940000	365850000	890860000	502900000	387960000	2942	4669	2773	18124;18125;18126;18127;18128;18129;18130;18131;18132;18133	24718;24719;24720;24721;24722;24723;24724;24725;24726;24727;24728;24729;24730	24730			13	
ALAILSQPTPSLVVDHER	0	Unmodified	1945.0633	0.063275544	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			74.599	73.848	3	0.0016351	65708	160511_QHF_FH_JSI10i_2	63.691	52.646			0.60148	0.73743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60148	0.73743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41848000	22942000	18907000	0	0	0	41848000	22942000	18907000	0	0	0	0	0	0	2943	3133	2774	18134	24731	24731			0	
ALAIMCR	0	Unmodified	833.42516	0.42516406	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				35.748	34.305	2	0.011307	27991	160511_QHF_FH_JSI9i_3	62.338	38.366			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2944	5315	2775	18135	24732	24732			1	
ALALLEDEERVVR	0	Unmodified	1511.8308	0.83075641	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	38.145	37.35	3	0.0054963	31688	160511_QHF_FH_JSI12i_3	33.782	13.676			0.96563	1.0459	8.8678	5	0	Median	1.2304	1.0517	NaN	1	0	Median	0.72866	0.89247	NaN	1	0	Median	1.0993	1.0955	NaN	1	0	Median	0.93276	0.98503	8.4811	2	0	Median	907310000	418450000	488860000	113650000	45789000	67857000	162220000	95601000	66616000	86970000	38410000	48560000	544480000	238650000	305820000	2945	6	2776	18136;18137;18138;18139;18140	24733;24734;24735;24736	24736			4	
ALALTAR	0	Unmodified	714.43882	0.43882351	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			24.49	23.602	2	0.014002	20487	160511_QHF_FH_JSI10i_2	58.246	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2946	1670	2777	18141	24737	24737			1	
ALAMAESTEK	1	Unmodified	1049.5063	0.50631073	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	2	3	3	21.344	20.69	2	2.6315E-05	16915	160511_QHF_FH_JSI11i_2	97.431	78.7			0.79809	0.78392	68.999	9	6	Median	1.3393	1.1189	65.423	3	2	Median	1.0644	1.298	140.25	2	2	Median	0.79809	0.78392	19.375	3	1	Median	0.42251	0.42931	NaN	1	1	Median	747050000	421100000	325960000	149770000	61863000	87910000	69475000	41045000	28430000	350710000	203350000	147360000	177100000	114840000	62260000	2947	3290	2778	18142;18143;18144;18145;18146;18147;18148;18149;18150;18151;18152	24738;24739;24740;24741;24742;24743;24744;24745;24746;24747	24744			10	
ALAMAESTEKHAR	1	Acetyl (K)	1455.714	0.7140121	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1		By matching	By MS/MS		15.3	0.471								2	1		1	2		32.231	22.799	3	1.1283E-05	13733	160513_QHF_FH_JSI11Kac_5	92.856	80.089			0.36362	0.36412	106.38	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.9817	2.3257	NaN	1	0	Median	0.37571	0.36848	1.6809	2	0	Median	NaN	NaN	NaN	0	0	Median	15949000	10628000	5320500	0	0	0	2774500	1000700	1773800	13174000	9627800	3546700	0	0	0	2948	3290	2779	18153;18154;18155	24748;24749	24749	2822		2	
ALAMAESTEKHAR	1	Acetyl (K);Oxidation (M)	1471.7089	0.70892672	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		21.067	11.638	3	3.1755E-08	8624	160513_QHF_FH_JSI11Kac_5	107.09	95.112			0.24267	0.23623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24267	0.23623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3333900	2558900	775020	0	0	0	0	0	0	3333900	2558900	775020	0	0	0	2949	3290	2779	18156	24750	24750	2822	2238	1	
ALAMGYKPK	2	Unmodified	977.53682	0.536823	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	4	3	3	2	26.101	22.646	2;3	0.0019261	18513	160511_QHF_FH_JSI12i_3	56.729	40.527			0.92995	0.9421	34.753	12	3	Median	0.8834	0.72148	62.594	4	3	Median	0.81017	0.94026	12.855	3	0	Median	1.234	1.08	5.8347	3	0	Plateau	0.84089	0.89521	7.4956	2	0	Median	2459600000	1177900000	1281700000	944620000	410170000	534450000	422300000	205040000	217260000	546330000	278260000	268070000	546370000	284450000	261920000	2950	1848	2780	18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168	24751;24752;24753;24754;24755;24756;24757;24758;24759;24760;24761	24761			11	
ALAMGYKPK	2	Oxidation (M)	993.53174	0.53173762	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	23.363	22.501	3	0.013484	18926	160511_QHF_FH_JSI11i_3	41.876	23.967			1.4165	1.4387	95.817	3	1	Plateau	3.0207	2.4524	NaN	1	1	Median	7.993	9.2482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4165	1.4387	NaN	1	0	Median	284560000	115110000	169450000	110620000	38765000	71855000	42113000	12986000	29127000	0	0	0	131830000	63356000	68473000	2951	1848	2780	18169;18170;18171;18172	24762;24763;24764	24762		1530	3	
ALAMGYKPK	2	Acetyl (K)	1019.5474	0.54738768	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		50.179	39.575	2	0.043901	22013	160513_QHF_FH_JSI11Kac_5	45.081	40.944			0.45145	0.44705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45145	0.44705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9098800	7417200	1681500	0	0	0	0	0	0	9098800	7417200	1681500	0	0	0	2952	1848	2780	18173	24765	24765			1	
ALANESGLNFLAIK	1	Unmodified	1459.8035	0.80347903	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.584	83.523	2	0.0034428	72112	160511_QHF_FH_JSI12i_2	55.806	26.636			0.74999	0.84487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74999	0.84487	NaN	1	0	Median	29472000	16900000	12572000	0	0	0	0	0	0	0	0	0	29472000	16900000	12572000	2953	3586	2781	18174	24766;24767	24766			2	
ALANSLACQGK	1	Unmodified	1131.5706	0.57064232	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.86	4	4	4				3			2	5	5	3	24.572	22.191	2	4.8244E-13	18455	160511_QHF_FH_JSI12i_2	147.2	70.142			1.0446	1.0917	40.607	14	6	Median	1.5881	1.3708	52.202	2	1	Median	1.0493	1.2557	49.255	4	3	Median	0.67509	0.69131	37.128	5	2	Median	1.1853	1.3091	14.661	3	0	Plateau	1574000000	822160000	751870000	105510000	50701000	54808000	412780000	203990000	208790000	795780000	445250000	350530000	259950000	122220000	137740000	2954	803	2782	18175;18176;18177;18178;18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189	24768;24769;24770;24771;24772;24773;24774;24775;24776;24777;24778;24779;24780;24781;24782;24783;24784;24785	24773			18	
ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK	1	Unmodified	3807.9214	0.92138569	835	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.866	9		3							2	3	3	4	97.721	97.564	3;4;5	7.7612E-20	88203	160511_QHF_FH_JSI10i_1	78.43	73.986			0.90841	0.87563	20.757	12	4	Median	0.97192	0.79692	7.7509	2	1	Median	0.92695	1.0531	8.1392	3	0	Median	0.8137	0.79456	8.6357	3	1	Plateau	0.93696	0.95975	22.913	4	2	Median	684060000	320050000	364010000	68392000	30809000	37583000	148930000	70435000	78495000	203480000	113550000	89927000	263260000	105260000	158000000	2955	835	2783	18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201	24786;24787;24788;24789;24790;24791;24792;24793;24794;24795;24796;24797;24798;24799;24800;24801;24802;24803	24799			18	
ALANVPR	0	Unmodified	739.43407	0.43407249	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		16.031	15.777	2	0.018633	12681	160511_QHF_FH_JSI11i_2	59.609	8.5727			0.78284	0.80151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78284	0.80151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	161900000	97846000	64055000	0	0	0	0	0	0	161900000	97846000	64055000	0	0	0	2956	2397	2784	18202	24804	24804			1	
ALAPADLMEHHSGSQGPLLTTGDLGK	1	Unmodified	2615.3014	0.30135034	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	71.948	71.799	3;4	8.719E-10	62263	160511_QHF_FH_JSI12i_3	72.399	66.331			1.0333	1.0038	3.4225	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1055	1.0284	NaN	1	0	Median	0.96593	0.97977	NaN	1	0	Median	269490000	134520000	134980000	0	0	0	0	0	0	102310000	49968000	52337000	167190000	84550000	82640000	2957	2694	2785	18203;18204;18205	24805;24806;24807;24808	24806			3	
ALAPEYAK	1	Unmodified	861.45962	0.45961853	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.77	4	6	2			3	3	1		3	6	4	6	24.828	21.127	2	0.00042359	13396	160513_QHF_FH_JSI11Kac_4	113.7	21.79			0.81191	0.86032	16.263	19	5	Median	0.9111	0.86003	16.064	3	0	Plateau	0.72923	0.86556	18.237	6	3	Median	0.81797	0.81892	9.6305	4	0	Median	0.80853	0.87074	21.101	6	2	Median	12177000000	6498800000	5678100000	2307000000	999120000	1307900000	3159600000	1881000000	1278600000	2949200000	1537200000	1412000000	3761000000	2081500000	1679500000	2958	867	2786	18206;18207;18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224	24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828;24829;24830;24831	24821			23	
ALAPEYAKAAGK	2	Acetyl (K)	1230.6608	0.66083754	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	2	1	47.193	37.131	2	0.013631	21835	160513_QHF_FH_JSI11Kac_4	53.683	24.596			0.71425	0.75469	108.02	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4222	1.6199	NaN	1	0	Median	0.35872	0.3516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19275000	14343000	4932400	0	0	0	2639500	999270	1640200	14648000	11356000	3292200	1987800	1987800	0	2959	867	2787	18225;18226;18227;18228	24832;24833;24834;24835;24836;24837	24836	565		6	
ALAPLLLAFVTK	1	Unmodified	1255.7904	0.79039515	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			9						9	4	6	5	3	99.9	95.636	2;3	1.3509E-50	91592	160511_QHF_FH_JSI11i_3	197.27	150.84			0.95634	0.89566	11.509	8	8	Median	1.0368	0.85789	3.4455	2	2	Median	0.79123	0.94006	18.395	3	3	Median	0.96974	0.92363	9.3727	2	2	Median	0.87664	0.91259	NaN	1	1	Median	15634000000	8460300000	7174100000	3738100000	1984000000	1754200000	4678200000	2629000000	2049200000	5436500000	2862500000	2574000000	1781600000	984820000	796790000	2960	1578	2788	18229;18230;18231;18232;18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245;18246	24838;24839;24840;24841;24842;24843;24844;24845;24846;24847;24848;24849;24850;24851;24852;24853;24854;24855	24839			18	
ALAPLLLAFVTKPNSALESCSFAR	1	Unmodified	2575.3832	0.38322947	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.939	90.218	3	1.9451E-21	52133	160513_QHF_FH_JSI10Kac_6	119.79	102.04			0.70925	0.8334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70925	0.8334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	232410000	129520000	102880000	0	0	0	232410000	129520000	102880000	0	0	0	0	0	0	2961	1578	2789	18247	24856;24857	24856			2	
ALAPTWEQLALGLEHSETVK	1	Unmodified	2192.1477	0.14773345	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	99.276	99.134	2;3	9.8951E-55	88192	160511_QHF_FH_JSI11i_3	212.79	174.52			0.97515	0.97778	26.303	9	1	Median	0.97473	0.83039	0.37042	2	0	Median	0.71204	0.8524	3.3318	2	0	Median	1.2579	1.2523	10.999	2	0	Median	1.4828	1.4833	25.728	3	1	Plateau	4034800000	1816100000	2218700000	342150000	148890000	193260000	669000000	396070000	272930000	1339100000	581080000	758070000	1684500000	690050000	994420000	2962	3603	2790	18248;18249;18250;18251;18252;18253;18254;18255;18256;18257;18258	24858;24859;24860;24861;24862;24863;24864;24865;24866;24867;24868;24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884	24860			27	
ALAQALK	1	Unmodified	713.44357	0.44357454	1882;2395	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	no	no	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		2	4									3	3	19.023	18.685	2	0.011874	15611	160511_QHF_FH_JSI11i_3	60.344	25.628			0.59318	0.74073	17.858	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81405	0.79625	29.131	2	1	Median	0.70698	0.74073	7.4753	2	1	Median	606930000	361360000	245570000	0	0	0	0	0	0	281050000	169840000	111210000	325870000	191520000	134350000	2963	1882;2395	2791	18259;18260;18261;18262;18263;18264	24885;24886;24887;24888;24889	24886			5	
ALAQALKEGR	1	Acetyl (K)	1097.6193	0.61930707	1882;2395	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	no	no	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		45.472	35.242	2	1.8835E-06	19841	160513_QHF_FH_JSI11Kac_5	127.4	75.543			0.29949	0.29316	77.234	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1272	1.2974	NaN	1	0	Median	0.35801	0.35501	27.071	2	1	Median	NaN	NaN	NaN	0	0	Median	18422000	13984000	4437200	0	0	0	2232100	1015300	1216800	16189000	12969000	3220400	0	0	0	2964	1882;2395	2792	18265;18266;18267	24890;24891;24892	24891	1894		3	
ALAQEDQGAGEVER	0	Unmodified	1471.6903	0.69029976	234	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	21.448	20.61	2	3.7364E-05	17984	160511_QHF_FH_JSI12i_1	79.492	64.226			1.3532	1.2518	4.2697	2	2	Median	1.5899	1.2901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1517	1.2145	NaN	1	1	Median	44532000	17348000	27184000	20908000	6605100	14303000	0	0	0	0	0	0	23624000	10743000	12881000	2965	234	2793	18268;18269;18270	24893;24894;24895	24894			3	
ALAQEQGQHLIPWMGDHK	1	Unmodified	2058.0105	0.010528467	2317	Q12872	SFSWAP	Splicing factor, suppressor of white-apricot homolog	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	59.176	59.045	4	0.024713	52236	160511_QHF_FH_JSI11i_3	31.818	27.38			0.84094	0.84016	14.697	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97877	0.93217	NaN	1	0	Median	0.72251	0.75724	NaN	1	0	Median	127500000	74830000	52669000	0	0	0	0	0	0	80556000	44118000	36438000	46942000	30711000	16231000	2966	2317	2794	18271;18272	24896	24896			0	
ALAQLSLSR	0	Unmodified	957.56073	0.56072956	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9	6.35		1	2					2	1	2	2		2	50.387	44.522	2	4.0461E-06	36587	160511_QHF_FH_JSI9i_3	134.48	72.14			0.93168	1.0163	83.678	6	4	Median	0.42551	0.34806	132.68	2	2	Median	0.97582	1.1478	11.731	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91223	1.0163	4.8988	2	1	Median	1440600000	998180000	442400000	1031800000	768440000	263400000	394780000	221920000	172860000	0	0	0	13959000	7816000	6143300	2967	3167	2795	18273;18274;18275;18276;18277;18278	24897;24898;24899;24900;24901;24902	24898			6	
ALAQYLLFLR	0	Unmodified	1206.7125	0.71247918	4948	Q9NR77	PXMP2	Peroxisomal membrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	91.359	83.185	2	4.8906E-20	46287	160513_QHF_FH_JSI11Kac_6	176.4	160.74			3.6452	3.4243	68.271	3	3	Plateau	NaN	NaN	NaN	0	0	Median	3.3163	3.9134	NaN	1	1	Median	3.6452	3.4243	NaN	1	1	Median	1.0602	1.1284	NaN	1	1	Median	837590000	162420000	675180000	0	0	0	376060000	55041000	321020000	360820000	56047000	304770000	100720000	51329000	49389000	2968	4948	2796	18279;18280;18281;18282;18283;18284	24903;24904;24905;24906;24907;24908	24903			6	
ALAQYLVVVSK	1	Unmodified	1189.7071	0.70705945	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.66			4					2		2	2	1	1	74.783	70.765	2	0.000285	60219	160511_QHF_FH_JSI10i_3	90.108	68.022			0.47399	0.49764	57.611	6	4	Median	0.78068	0.65397	87.497	2	1	Median	0.71495	0.83739	46.341	2	1	Median	0.42402	0.41041	NaN	1	1	Median	0.34909	0.34722	NaN	1	1	Median	286660000	227240000	59415000	36265000	29016000	7249600	31156000	23327000	7829400	64242000	52180000	12061000	155000000	122720000	32275000	2969	1549	2797	18285;18286;18287;18288;18289;18290	24909;24910;24911;24912;24913;24914	24910			6	
ALASGTEASSTDPGAPGGPGGAEGPMAK	1	Unmodified	2440.1176	0.11763189	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.667	43.004	3	2.2508E-14	38999	160511_QHF_FH_JSI11i_1	86.519	78.622			0.89638	0.93183	8.3307	3	1	Plateau	1.3569	1.0696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0698	1.0348	NaN	1	0	Median	0.89638	0.91334	NaN	1	0	Median	159590000	54876000	104710000	26035000	7890600	18145000	44492000	0	44492000	33666000	18570000	15095000	55394000	28415000	26978000	2970	2761	2798	18291;18292;18293;18294	24915;24916;24917;24918;24919;24920	24916			6	
ALASILLQDHIR	0	Unmodified	1348.7827	0.78268401	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	3	1	1	68.926	65.363	2;3	1.0869E-10	35627	160513_QHF_FH_JSI10Kac_6	130.44	78.188			0.98611	0.90338	20.294	6	2	Median	1.0825	0.86077	NaN	1	0	Median	1.0703	1.2431	17.488	3	1	Median	0.90852	0.85849	NaN	1	0	Median	0.7639	0.8283	NaN	1	1	Median	250260000	134630000	115630000	51699000	27087000	24612000	126870000	69903000	56963000	60354000	30947000	29407000	11344000	6691600	4652100	2971	3036	2799	18295;18296;18297;18298;18299;18300	24921;24922;24923;24924;24925;24926	24926			5	
ALASLGKPLHPLLVVAPNQLK	2	Acetyl (K)	2220.3358	0.335809	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		86.656	77.333	3	2.567E-08	43000	160513_QHF_FH_JSI11Kac_6	141.31	127.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42545000	42545000	0	0	0	0	0	0	0	42545000	42545000	0	0	0	0	2972	4348	2800	18301	24927	24927	3139		1	
ALASLMTYK	1	Unmodified	996.5314	0.53140327	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.5	1	4	3						4	3	3	4	2	56.498	53.032	2	1.2432E-08	45257	160511_QHF_FH_JSI12i_3	152.63	52.442			1.0116	1.0118	54.815	12	3	Median	1.275	1.0865	11.827	3	0	Median	0.81634	1.009	109.86	3	2	Median	0.93552	1.1001	22.806	4	1	Linear	1.0307	1.0938	10.628	2	0	Median	3026700000	1586600000	1440200000	494410000	203970000	290440000	352240000	239100000	113140000	946130000	447700000	498430000	1233900000	695790000	538160000	2973	762	2801	18302;18303;18304;18305;18306;18307;18308;18309;18310;18311;18312;18313	24928;24929;24930;24931;24932;24933;24934;24935;24936;24937;24938;24939;24940;24941;24942;24943	24940			16	
ALASPSSK	1	Unmodified	759.41267	0.41266834	4089	Q96GE4	CEP95	Centrosomal protein of 95 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	1.36					1	3			1		1	2	2	11.856	4.6369	2	0.022039	4019	160513_QHF_FH_JSI11Kac_2	55.441	9.09			0.25422	0.27665	142.08	5	1	Median	NaN	NaN	NaN	0	0	Median	0.15977	0.19344	NaN	1	0	Median	0.5018	0.49387	27.871	2	0	Median	0.061655	0.067128	200.27	2	1	Median	296190000	228800000	67381000	0	0	0	91847000	78168000	13678000	86121000	54946000	31175000	118220000	95690000	22528000	2974	4089	2802	18314;18315;18316;18317;18318	24944;24945;24946;24947;24948	24944			5	
ALASQLQDSLK	1	Unmodified	1172.6401	0.6401021	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	5.59	5	4	4			2	3	1		4	5	4	6	50.364	46.656	2	1.7979E-29	39960	160511_QHF_FH_JSI11i_2	185.61	146.65			1.0531	1.025	33.426	17	5	Median	1.074	0.87962	16.889	4	1	Median	0.88696	1.025	54.927	5	2	Median	1.0846	1.0793	6.5491	3	0	Plateau	1.0713	1.0975	16.52	5	2	Median	2559300000	1159200000	1400200000	432480000	176560000	255920000	544470000	286190000	258280000	758830000	318720000	440110000	823540000	377690000	445850000	2975	1139	2803	18319;18320;18321;18322;18323;18324;18325;18326;18327;18328;18329;18330;18331;18332;18333;18334;18335;18336;18337	24949;24950;24951;24952;24953;24954;24955;24956;24957;24958;24959;24960;24961;24962;24963;24964;24965;24966;24967;24968;24969;24970;24971;24972;24973;24974;24975;24976;24977;24978;24979	24972			31	
ALASTCKPELQK	2	Unmodified	1344.7071	0.7071358	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.156	22.146	3	0.00043337	18159	160511_QHF_FH_JSI12i_3	75.739	63.108			1.0162	1.03	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0162	1.03	NaN	1	1	Median	62959000	36662000	26298000	0	0	0	0	0	0	0	0	0	62959000	36662000	26298000	2976	4572	2804	18338	24980	24980			1	
ALATGQFAVFYK	1	Unmodified	1314.6972	0.69722304	553	O75648	TRMU	Mitochondrial tRNA-specific 2-thiouridylase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		78.077	69.111	2	3.8208E-05	37776	160513_QHF_FH_JSI11Kac_6	94.087	77.311			0.84245	0.76325	10.832	2	0	Median	0.84392	0.70697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84097	0.824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36454000	16805000	19649000	16803000	7290500	9512100	0	0	0	19652000	9515000	10137000	0	0	0	2977	553	2805	18339;18340	24981;24982	24981			2	
ALATHPGISFYEEPR	0	Unmodified	1686.8366	0.83657007	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	52.193	51.805	3	0.0001484	45799	160511_QHF_FH_JSI10i_2	74.296	63.526			1.0678	1.1038	6.5463	3	1	Median	NaN	NaN	NaN	0	0	Median	0.89128	1.1038	NaN	1	1	Median	1.2736	1.2181	NaN	1	0	Median	1.0678	1.0761	NaN	1	0	Median	471410000	234820000	236580000	0	0	0	59690000	36780000	22911000	180940000	79182000	101750000	230780000	118860000	111920000	2978	2305	2806	18341;18342;18343	24983;24984;24985	24984			1	
ALATKDMR	1	Acetyl (K)	946.4906	0.49060109	4205	Q96Q15;Q6P435	SMG1	Serine/threonine-protein kinase SMG1;Putative uncharacterized SMG1-like protein	yes	no	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	30.747	21.408	2	0.016103	13084	160513_QHF_FH_JSI10Kac_4	66.073	37.561			0.78033	0.89054	18.585	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65045	0.78087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93615	1.0156	NaN	1	0	Median	17220000	10010000	7209800	0	0	0	9227100	5900100	3327000	0	0	0	7992700	4109900	3882800	2979	4205	2807	18344;18345	24986;24987	24986	3077		2	
ALATNPALR	0	Unmodified	925.53451	0.53451481	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	25.951	25.625	2	0.00072971	21871	160511_QHF_FH_JSI11i_3	75.213	40.508			0.9435	0.91982	3.0159	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75289	0.91173	NaN	1	0	Median	0.96905	0.94076	4.5455	2	0	Median	0.94312	0.92797	NaN	1	0	Median	335740000	172490000	163250000	0	0	0	62812000	37475000	25337000	146170000	63990000	82178000	126760000	71020000	55736000	2980	2947	2808	18346;18347;18348;18349	24988;24989;24990	24988			3	
ALATPPKLHTCEK	2	Acetyl (K)	1506.7864	0.78644876	4145	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.655							3	8	3	2	4	3	5	46.479	36.455	2;3	2.1023E-08	18799	160513_QHF_FH_JSI10Kac_5	107.99	91.221			0.88545	0.96318	12.518	12	0	Median	NaN	NaN	NaN	0	0	Median	0.87295	1.0274	13.114	4	0	Median	0.89655	0.8818	4.9496	3	0	Median	0.98229	1.0705	13.757	5	0	Median	693560000	350380000	343180000	1445900	0	1445900	197140000	101060000	96082000	202070000	113430000	88639000	292900000	135890000	157010000	2981	4145	2809	18350;18351;18352;18353;18354;18355;18356;18357;18358;18359;18360;18361;18362;18363	24991;24992;24993;24994;24995;24996;24997;24998;24999;25000;25001;25002;25003;25004;25005;25006;25007;25008;25009	25005	3050		19	
ALAVASK	1	Unmodified	658.40138	0.40137537	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	13.528	13.133	2	0.045601	10842	160511_QHF_FH_JSI12i_1	44.611	0			1.1781	0.99933	16.509	5	0	Median	1.1781	0.98579	NaN	1	0	Median	0.84629	0.99933	NaN	1	0	Median	1.0423	1.0512	27.259	2	0	Median	1.1897	1.245	NaN	1	0	Median	1713000000	936310000	776650000	146240000	81198000	65039000	513770000	283530000	230240000	817590000	452250000	365340000	235360000	119340000	116020000	2982	1437	2810	18364;18365;18366;18367;18368	25010	25010			1	
ALAVEGK	1	Unmodified	686.39629	0.39629	2162;234;4665	Q01082;O15020;Q9H254	SPTBN1;SPTBN2;SPTBN4	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, non-erythrocytic 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.542	13.105	2	0.015369	10825	160511_QHF_FH_JSI12i_1	64.757	32.822			1.1073	1.1271	12.528	4	0	Median	1.1725	0.9675	NaN	1	0	Median	1.0457	1.2426	NaN	1	0	Median	1.2538	1.2291	NaN	1	0	Median	0.96162	1.0336	NaN	1	0	Median	1622000000	860290000	761690000	319490000	169150000	150340000	444980000	234430000	210540000	460550000	227200000	233350000	396960000	229510000	167460000	2983	2162;234;4665	2811	18369;18370;18371;18372	25011	25011			1	
ALAVGGLGSIIR	0	Unmodified	1125.687	0.68699271	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			76.306	74.879	2	9.0388E-05	61681	160511_QHF_FH_JSI9i_3	100.02	79.497			0.99023	0.97026	0.66696	2	0	Median	1.2051	0.97485	NaN	1	0	Median	0.81367	0.9657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217710000	100510000	117200000	123710000	49228000	74478000	94001000	51281000	42720000	0	0	0	0	0	0	2984	4338	2812	18373;18374	25012;25013;25014;25015	25015			4	
ALAVHLLDLGLR	0	Unmodified	1289.782	0.78195573	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	1	3	85.303	84.661	3	2.6766E-05	75304	160511_QHF_FH_JSI11i_3	87.363	65.604			0.99343	1.1169	9.8671	4	0	Linear	1.2189	1.0059	NaN	1	0	Median	0.71991	0.815	NaN	1	0	Median	1.035	0.98117	NaN	1	0	Median	0.95352	0.98821	NaN	1	0	Median	104290000	56255000	48035000	32035000	14847000	17188000	23255000	16039000	7216300	24007000	10955000	13051000	24992000	14413000	10579000	2985	3382	2813	18375;18376;18377;18378;18379;18380;18381	25016;25017;25018;25019;25020;25021;25022;25023;25024	25017			8	
ALAVLEK	1	Unmodified	742.45889	0.45889025	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			34.847	33.891	2	0.023579	29788	160511_QHF_FH_JSI10i_2	58.604	21.511			1.0685	1.3135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0685	1.3135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66287000	42489000	23797000	0	0	0	66287000	42489000	23797000	0	0	0	0	0	0	2986	3029	2814	18382	25025	25025			1	
ALAVNPR	0	Unmodified	739.43407	0.43407249	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	16.263	15.858	2	0.013952	12531	160511_QHF_FH_JSI12i_3	66.994	10.483			1.0223	0.94013	16.183	5	1	Median	1.0223	0.85761	NaN	1	1	Median	0.83191	0.94013	NaN	1	0	Median	0.97932	0.97058	27.067	2	0	Median	1.0684	1.0987	NaN	1	0	Median	1171100000	611870000	559190000	219630000	117150000	102480000	101100000	53568000	47532000	476270000	253900000	222370000	374070000	187250000	186820000	2987	5616	2815	18383;18384;18385;18386;18387	25026;25027;25028;25029;25030;25031;25032	25032			7	
ALAVSDLNR	0	Unmodified	957.52434	0.52434406	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.644	6	9	2							3	4	5	5	27.857	27.288	2	1.6382E-06	28314	160511_QHF_FH_JSI11i_2	131.03	64.349			0.90508	0.97784	31.785	13	5	Median	1.0531	0.89766	NaN	1	0	Median	0.86839	0.98778	4.4793	3	2	Plateau	0.99884	1.0037	24.993	5	1	Median	0.79921	0.84359	50.444	4	2	Median	1811200000	913000000	898200000	206050000	105370000	100680000	442350000	219800000	222550000	734000000	347070000	386930000	428790000	240760000	188030000	2988	1002	2816	18388;18389;18390;18391;18392;18393;18394;18395;18396;18397;18398;18399;18400;18401;18402;18403;18404	25033;25034;25035;25036;25037;25038;25039;25040;25041;25042;25043;25044;25045;25046;25047;25048;25049;25050;25051;25052	25048			20	
ALAVVYGPHEIR	0	Unmodified	1323.7299	0.72992016	4895	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	1	3	3	2	47.325	44.174	2;3	7.4719E-06	38847	160511_QHF_FH_JSI11i_3	106.49	100.17			0.8415	0.93096	22.501	9	7	Median	0.72445	0.62079	NaN	1	1	Median	0.62301	0.75482	22.186	3	3	Median	1.0144	0.93096	19.979	3	1	Median	1.0799	1.0729	5.8177	2	2	Median	1253400000	642900000	610520000	51419000	33276000	18143000	266690000	160640000	106040000	522700000	246030000	276680000	412610000	202950000	209660000	2989	4895	2817	18405;18406;18407;18408;18409;18410;18411;18412;18413	25053;25054;25055;25056;25057;25058;25059;25060;25061	25053			9	
ALAYFEQLK	1	Unmodified	1081.5808	0.5807963	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	62.442	61.405	2	0.00082248	52801	160511_QHF_FH_JSI12i_2	84.743	58.804			0.46614	0.39589	29.311	3	3	Median	0.46614	0.39589	NaN	1	1	Median	0.28906	0.35713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56201	0.6198	NaN	1	1	Median	982590000	774600000	207990000	201330000	150380000	50947000	533490000	468910000	64583000	0	0	0	247770000	155310000	92456000	2990	344	2818	18414;18415;18416	25062;25063;25064	25062			3	
ALCDNVDTR	0	Unmodified	1062.4764	0.47640759	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.411	16.136	2	0.0046873	13837	160511_QHF_FH_JSI12i_1	66.27	47.176			1.4127	1.6036	45.847	3	3	Median	NaN	NaN	NaN	0	0	Median	1.4127	1.6036	NaN	1	1	Median	0.85401	0.81899	NaN	1	1	Median	1.8471	1.9672	NaN	1	1	Median	109460000	50769000	58687000	0	0	0	34699000	14981000	19718000	37321000	22564000	14757000	37437000	13225000	24212000	2991	1665	2819	18417;18418;18419	25065;25066;25067	25066			3	
ALCHLNVPVTVVLDAAVGYIMEK	1	Unmodified	2511.3229	0.3229374	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.36	103.36	3	6.2467E-10	92391	160511_QHF_FH_JSI11i_3	96.591	92.996			0.89839	0.85815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89839	0.85815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27438000	19765000	7673500	0	0	0	0	0	0	18298000	10624000	7673500	9140100	9140100	0	2992	2518	2820	18420;18421	25068;25069;25070	25068			3	
ALCQITDSTMLQAIER	0	Unmodified	1848.9074	0.90736853	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									2	1		83.811	83.436	2;3	1.566E-16	74110	160511_QHF_FH_JSI10i_2	117.23	83.347			0.89699	0.93172	54.363	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2229	1.3685	NaN	1	0	Median	0.65792	0.63437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35773000	25778000	9995000	0	0	0	18439000	13409000	5030100	17334000	12369000	4965000	0	0	0	2993	5708	2821	18422;18423;18424	25071;25072;25073	25073			3	
ALCTGEK	1	Unmodified	777.36909	0.36908897	1685;1348;2276	P49792;P30405;Q08752	RANBP2;PPIF;PPID	E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase D	no	no	0	0	0	0			By MS/MS	By MS/MS	13.5	0.5						1	1					1	1	9.0593	1.4482	2	0.037608	3514	160513_QHF_FH_JSI11Kac_4	58.167	0			0.70786	0.68962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70786	0.68962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11004000	6307400	4696600	0	0	0	0	0	0	11004000	6307400	4696600	0	0	0	2994	1685;1348;2276	2822	18425;18426	25074;25075	25074			2	
ALCTGEKGFGFK	2	Acetyl (K)	1355.6544	0.65437195	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		67.877	56.99	2	0.0030617	30683	160513_QHF_FH_JSI11Kac_5	71.349	57.142			0.18764	0.18612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18764	0.18612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9023200	7624900	1398300	0	0	0	0	0	0	9023200	7624900	1398300	0	0	0	2995	1685	2823	18427	25076;25077	25076	1705		2	
ALCTGEKGFGYK	2	Acetyl (K)	1371.6493	0.64928657	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.7							3	3	1		2	3	2	55.471	44.788	2	3.3835E-19	22819	160513_QHF_FH_JSI10Kac_5	157.95	126.87			0.82715	0.92262	105.27	6	0	Median	NaN	NaN	NaN	0	0	Median	1.6806	2.0109	15.65	2	0	Median	0.20603	0.2017	0.9533	2	0	Median	0.82715	0.92262	21.322	2	0	Median	100210000	66989000	33222000	0	0	0	20631000	7090000	13541000	63587000	51411000	12176000	15994000	8488000	7505800	2996	1348	2824	18428;18429;18430;18431;18432;18433;18434	25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089	25089	1283;1284		12	
ALCTGEKGIGHTTGK	2	Acetyl (K)	1570.7773	0.77734063	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		33.988	24.472	3	0.0017139	14491	160513_QHF_FH_JSI11Kac_5	56.514	42.082			0.9923	1.0811	205.28	2	0	Median	NaN	NaN	NaN	0	0	Median	3.8672	4.616	NaN	1	0	Median	0.25462	0.25322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25355000	19348000	6006500	0	0	0	3752700	997540	2755200	21602000	18351000	3251300	0	0	0	2997	2276	2825	18435;18436;18437	25090;25091	25091	2367		2	
ALDAAFYK	1	Unmodified	897.45962	0.45961853	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	43.579	42.868	2	0.0016273	36673	160511_QHF_FH_JSI12i_2	86.953	58.441			1.0761	1.0929	10.059	6	0	Median	NaN	NaN	NaN	0	0	Median	0.86551	1.058	6.2783	2	0	Median	1.103	1.0731	5.0303	2	0	Median	1.1262	1.2045	15.449	2	0	Median	509950000	265190000	244760000	0	0	0	159720000	95164000	64557000	194860000	96562000	98294000	155370000	73464000	81904000	2998	962	2826	18438;18439;18440;18441;18442;18443	25092;25093;25094;25095;25096;25097	25094			6	
ALDCSEVTVR	0	Unmodified	1148.5496	0.54957253	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.716	30.148	2	0.02175	27089	160511_QHF_FH_JSI12i_1	43.282	26.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2999	3167	2827	18444	25098	25098			1	
ALDDISESIK	1	Unmodified	1089.5554	0.55536941	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	48.549	46.173	2	1.3766E-05	40972	160511_QHF_FH_JSI9i_1	101.65	83.207			1.0631	1.0215	18.607	5	1	Median	1.0631	0.8797	NaN	1	0	Median	0.73578	0.89294	NaN	1	1	Median	1.0473	1.0215	NaN	1	0	Median	1.1899	1.2695	9.0119	2	0	Median	931910000	493200000	438710000	195860000	98506000	97352000	273760000	148790000	124970000	258460000	134470000	123990000	203830000	111440000	92398000	3000	5576	2828	18445;18446;18447;18448;18449	25099;25100;25101;25102;25103;25104;25105	25104			7	
ALDDMISTLK	1	Unmodified	1105.5689	0.56891099	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.93	4	1	1				3			1	3	2	3	69.2	65.256	2	7.0163E-08	59704	160511_QHF_FH_JSI11i_1	123.86	76.793			0.85776	0.93173	7.6994	9	1	Median	1.1811	0.97445	NaN	1	0	Median	0.85776	0.99064	8.5182	3	1	Median	0.94534	0.91593	2.418	2	0	Median	0.8524	0.89837	1.3123	3	0	Plateau	4521900000	2144000000	2377900000	736010000	335800000	400210000	1586700000	732270000	854390000	1158400000	561270000	597140000	1040800000	514680000	526120000	3001	1655	2829	18450;18451;18452;18453;18454;18455;18456;18457;18458	25106;25107;25108;25109;25110;25111;25112;25113;25114;25115;25116;25117;25118;25119;25120;25121;25122	25106			16	
ALDDMISTLKK	2	Unmodified	1233.6639	0.663874	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	57.882	57.464	2;3	6.2484E-06	49420	160511_QHF_FH_JSI12i_3	110.38	74.937			1.1091	1.1209	20.074	3	0	Plateau	1.1289	0.97621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81226	0.75473	NaN	1	0	Median	1.1091	1.1209	NaN	1	0	Median	195260000	92923000	102340000	58518000	21334000	37184000	0	0	0	41214000	19661000	21552000	95531000	51928000	43603000	3002	1655	2830	18459;18460;18461	25123;25124;25125	25125			2	
ALDDTAR	0	Unmodified	760.37153	0.37153181	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	5	5.66	4					2				1	2	2	1	7.9898	5.3126	2	0.021566	3429	160513_QHF_FH_JSI11Kac_3	68.915	24.304			1.2031	1.1775	13.913	6	0	Median	1.4734	1.1946	NaN	1	0	Median	0.88423	1.0405	15.443	2	0	Median	1.2031	1.167	12.363	2	0	Median	1.336	1.3915	NaN	1	0	Median	1974300000	905190000	1069100000	419160000	161740000	257420000	543660000	294190000	249480000	536430000	238080000	298350000	475090000	211190000	263900000	3003	1180	2831	18462;18463;18464;18465;18466;18467	25126;25127;25128	25127			3	
ALDEEVHK	1	Unmodified	939.46616	0.46616048	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	11.811	11.346	3	0.00043508	8780	160511_QHF_FH_JSI12i_2	76.679	69.033			1.0433	1.0105	9.8818	8	0	Median	1.2198	1.0421	3.5653	2	0	Median	0.81534	0.97145	2.5211	2	0	Median	1.0433	1.0421	5.1342	2	0	Median	0.91581	1.005	23.874	2	0	Median	1035300000	535370000	499900000	173900000	84373000	89530000	294250000	171600000	122650000	316270000	153990000	162280000	250860000	125410000	125440000	3004	2242	2832	18468;18469;18470;18471;18472;18473;18474;18475	25129;25130;25131;25132;25133	25130			4	
ALDEGDIALLK	1	Unmodified	1156.634	0.63395408	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	2	1	3	70.852	66.297	2	5.104E-23	60608	160511_QHF_FH_JSI11i_1	171.56	108.09			0.99447	0.94961	15.073	7	0	Median	1.0703	0.88531	NaN	1	0	Median	0.78736	0.9526	31.686	2	0	Median	1.0527	1.0126	NaN	1	0	Median	0.83924	0.89231	11.227	3	0	Plateau	2402500000	1214600000	1187800000	563530000	290840000	272680000	600750000	308100000	292650000	582690000	268060000	314630000	655500000	347640000	307860000	3005	1449	2833	18476;18477;18478;18479;18480;18481;18482	25134;25135;25136;25137;25138;25139;25140;25141;25142;25143;25144	25135			11	
ALDELFEAIEQK	1	Unmodified	1404.7137	0.71366097	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	94.466	94.257	2;3	0.00022223	82818	160511_QHF_FH_JSI9i_2	94.616	69.399			1.5199	1.3321	NaN	1	1	Median	1.5199	1.3321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18391000	6711800	11679000	18391000	6711800	11679000	0	0	0	0	0	0	0	0	0	3006	2787	2834	18483;18484	25145;25146	25146			2	
ALDELMDGDIIVFQK	1	Unmodified	1705.8597	0.85967328	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	99.359	99.247	2;3	9.4199E-07	90094	160511_QHF_FH_JSI12i_1	142.08	120.83			0.6124	0.81351	17.62	6	4	Plateau	1.0483	0.88742	NaN	1	1	Median	0.56377	0.64372	12.793	2	0	Median	0.85933	0.83043	15.207	2	2	Median	0.89933	0.89029	NaN	1	1	Median	82729000	43415000	39314000	6765900	2036500	4729300	35712000	19537000	16175000	25294000	15332000	9962000	14957000	6509600	8447600	3007	3922	2835	18485;18486;18487;18488;18489;18490	25147;25148;25149;25150;25151;25152;25153;25154	25150			8	
ALDEMEK	1	Unmodified	834.37932	0.3793193	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			16.545	16.297	2	0.036665	13849	160511_QHF_FH_JSI10i_1	50.127	29.572			0.92735	1.0771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92735	1.0771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104000000	53638000	50364000	0	0	0	104000000	53638000	50364000	0	0	0	0	0	0	3008	3809	2836	18491	25155	25155			1	
ALDENAK	1	Unmodified	759.37628	0.37628284	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.502	6.3908	2	0.017066	4409	160511_QHF_FH_JSI10i_1	55.504	27.082			1.0725	1.0545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0725	1.0545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	192550000	113640000	78917000	0	0	0	0	0	0	192550000	113640000	78917000	0	0	0	3009	8	2837	18492;18493	25156;25157	25157			2	
ALDEYYDK	1	Unmodified	1015.4498	0.44984171	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	29.56	28.84	2	0.0013783	25132	160511_QHF_FH_JSI9i_1	105.57	82.548			0.86854	1.3693	34.456	3	3	Plateau	1.6811	1.3693	NaN	1	1	Median	1.2835	1.4994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74471	0.79301	NaN	1	1	Median	684360000	331770000	352600000	134850000	41454000	93397000	211670000	88391000	123280000	0	0	0	337850000	201920000	135920000	3010	1479	2838	18494;18495;18496;18497;18498	25158;25159;25160;25161;25162	25161			5	
ALDEYYDKHFTEFVPLR	1	Acetyl (K)	2184.0528	0.052770437	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.948	75.631	3	4.9834E-32	41876	160513_QHF_FH_JSI11Kac_6	209.7	188.17			0.033726	0.032124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.033726	0.032124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47915000	44331000	3584500	0	0	0	0	0	0	47915000	44331000	3584500	0	0	0	3011	1479	2839	18499	25163	25163	1466		1	
ALDFIASK	1	Unmodified	863.47527	0.4752686	361;1021	O43707;Q08043;P12814	ACTN4;ACTN3;ACTN1	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	5.22	4	4					1	1		2	3	2	3	50.6	47.8	2	0.002006	43499	160511_QHF_FH_JSI12i_1	93.374	42.408			0.63268	0.59541	63.562	10	6	Median	0.4283	0.35741	31.972	2	1	Median	0.36117	0.442	7.1913	3	3	Median	1.6299	1.6298	3.5469	2	0	Median	0.78281	0.87469	29.197	3	2	Median	2094500000	1130000000	964470000	376280000	259280000	117000000	408870000	269690000	139180000	790720000	355010000	435700000	518650000	246070000	272580000	3012	361;1021	2840	18500;18501;18502;18503;18504;18505;18506;18507;18508;18509	25164;25165;25166;25167;25168;25169;25170;25171;25172;25173;25174;25175;25176	25168			13	
ALDFIASKGVK	2	Acetyl (K)	1189.6707	0.67067394	361;1021	O43707;Q08043;P12814	ACTN4;ACTN3;ACTN1	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1	no	no	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		73.841	63.054	2	9.5377E-05	33661	160513_QHF_FH_JSI11Kac_5	96.89	68.491			0.43674	0.43363	2.0321	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43674	0.43363	2.0321	2	0	Median	NaN	NaN	NaN	0	0	Median	15254000	11037000	4216800	0	0	0	0	0	0	15254000	11037000	4216800	0	0	0	3013	361;1021	2841	18510;18511	25177;25178;25179;25180	25179	178		4	
ALDGPEQMELEEGK	1	Acetyl (Protein N-term)	1586.7134	0.71340297	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	1	2	68.156	65.952	2	2.0509E-52	60083	160511_QHF_FH_JSI11i_1	177.57	161.32			1.0175	1.0414	111.28	5	1	Median	1.3094	1.0911	NaN	1	0	Median	0.88457	1.0414	NaN	1	0	Median	1.0175	1.0017	NaN	1	0	Median	0.36301	0.3764	192.37	2	1	Median	708460000	375500000	332970000	212580000	83572000	129010000	172090000	92108000	79987000	239100000	122600000	116500000	84680000	77214000	7466000	3014	1984	2842	18512;18513;18514;18515;18516	25181;25182;25183;25184;25185;25186;25187;25188;25189;25190;25191	25182			11	
ALDHAMSVASDHNVK	1	Unmodified	1593.7569	0.75693954	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.321	24.296	3	9.5961E-05	20151	160511_QHF_FH_JSI12i_3	91.969	79.992			0.51289	0.51937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51289	0.51937	NaN	1	1	Median	34954000	19310000	15644000	0	0	0	0	0	0	0	0	0	34954000	19310000	15644000	3015	5656	2843	18517	25192	25192			1	
ALDIAENEMPGLMR	0	Unmodified	1558.7483	0.74834869	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.751	7	10	6							5	5	7	6	76.8	76.114	2;3	3.4274E-98	67864	160511_QHF_FH_JSI10i_2	301.96	266.45			0.95535	1.003	18.615	22	7	Median	1.2357	1.022	10.989	5	2	Median	0.85592	1.0069	18.72	5	0	Median	0.96073	0.95294	21.369	6	2	Median	0.90284	0.98762	23.972	6	3	Median	4720700000	2352700000	2367900000	800820000	334810000	466010000	1016000000	529300000	486730000	1912600000	995930000	916670000	991210000	492690000	498520000	3016	1234	2844	18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540	25193;25194;25195;25196;25197;25198;25199;25200;25201;25202;25203;25204;25205;25206;25207;25208;25209;25210;25211;25212;25213;25214;25215;25216;25217;25218;25219;25220;25221;25222;25223;25224;25225;25226	25222			34	
ALDIAENEMPGLMR	0	Oxidation (M)	1574.7433	0.74326331	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5									4	2	3	66.835	65.905	2	5.4758E-05	58416	160511_QHF_FH_JSI10i_2	83.045	68.355			0.82816	0.89819	18.955	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97081	1.027	NaN	1	1	Median	0.70648	0.78553	NaN	1	0	Median	66923000	32805000	34118000	0	0	0	0	0	0	39224000	19522000	19702000	27699000	13282000	14417000	3017	1234	2844	18541;18542;18543;18544;18545;18546;18547;18548;18549	25227;25228;25229;25230;25231;25232;25233;25234;25235;25236	25236		864;865	10	
ALDIDLDKPLADSEK	2	Unmodified	1641.8461	0.8461317	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	65.017	64.145	3	0.004852	55009	160511_QHF_FH_JSI12i_2	52.887	34.97			0.67308	0.68705	31.241	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57793	0.55087	NaN	1	1	Median	0.7839	0.8569	NaN	1	1	Median	56614000	35216000	21397000	0	0	0	0	0	0	38354000	23534000	14820000	18260000	11683000	6577100	3018	179	2845	18550;18551	25237;25238	25238			2	
ALDINPQSSVLLCHIGVVQHALK	1	Unmodified	2511.3632	0.36316273	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				90.875	89.75	4	0.019007	73541	160511_QHF_FH_JSI9i_3	29.333	25.529			1.8667	1.5867	NaN	1	1	Median	1.8667	1.5867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9920500	2125400	7795100	9920500	2125400	7795100	0	0	0	0	0	0	0	0	0	3019	1347	2846	18552	25239	25239			1	
ALDIPLVK	1	Unmodified	867.54295	0.54295423	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5.4	5.87	3	4					2	1		2	2	4	2	69.737	65.97	2	0.00063796	57072	160511_QHF_FH_JSI12i_2	101.64	63.998			0.97456	1.0194	12.12	10	0	Median	1.308	1.0881	13.184	2	0	Median	0.82624	0.98556	9.1605	2	0	Median	0.99994	0.97488	17.225	4	0	Median	0.97332	1.0413	1.4985	2	0	Median	511960000	254890000	257070000	107930000	47076000	60858000	74528000	42553000	31975000	213960000	102300000	111660000	115530000	62952000	52581000	3020	3101	2847	18553;18554;18555;18556;18557;18558;18559;18560;18561;18562	25240;25241;25242;25243;25244;25245	25242			6	
ALDLADMITR	0	Unmodified	1117.5801	0.58014438	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	77.67	76.836	2	5.7374E-05	67464	160511_QHF_FH_JSI11i_2	91.584	66.661			0.8673	0.90541	7.7638	4	0	Median	1.1806	0.97502	NaN	1	0	Median	0.67822	0.82923	NaN	1	0	Median	0.95692	0.95145	NaN	1	0	Median	0.78607	0.8616	NaN	1	0	Median	168000000	93640000	74365000	26181000	13175000	13007000	32627000	19114000	13513000	46409000	25679000	20729000	62788000	35672000	27116000	3021	1694	2848	18563;18564;18565;18566;18567	25246;25247;25248;25249	25248			4	
ALDLDPENDSYK	1	Unmodified	1378.6252	0.62523989	4054	Q96EQ0	SGTB	Small glutamine-rich tetratricopeptide repeat-containing protein beta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		49.518	49.103	2	0.0023481	44437	160511_QHF_FH_JSI11i_1	70.977	52.197			1.5615	1.5381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5615	1.5381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27633000	7394200	20238000	0	0	0	0	0	0	27633000	7394200	20238000	0	0	0	3022	4054	2849	18568	25250	25250			1	
ALDLDSSCK	1	Unmodified	1007.4594	0.45936054	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	25.075	24.744	2	0.00026366	21659	160511_QHF_FH_JSI11i_1	96.948	55.295			10.636	13.558	26.512	3	3	Plateau	NaN	NaN	NaN	0	0	Median	12.31	14.806	NaN	1	1	Median	9.1891	9.0087	NaN	1	1	Median	12.752	13.558	NaN	1	1	Median	5512300000	343450000	5168900000	0	0	0	2470400000	123910000	2346500000	1882100000	124330000	1757800000	1159800000	95204000	1064600000	3023	1386	2850	18569;18570;18571	25251;25252;25253	25251			3	
ALDLFSDNAPPPELLEIINEDIAK	1	Unmodified	2636.3585	0.35851409	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	3	2	2	102.81	102.72	3	2.6281E-34	93497	160511_QHF_FH_JSI10i_1	170.56	163.69			0.9907	1.066	17.979	8	3	Median	0.99716	0.83606	NaN	1	1	Median	0.8729	1.0665	10.462	3	1	Plateau	1.2304	1.2285	26.527	2	1	Median	0.95371	1.0162	7.4101	2	0	Median	2099800000	1093200000	1006600000	219940000	120870000	99070000	610910000	336960000	273950000	701210000	339690000	361520000	567700000	295650000	272050000	3024	2628	2851	18572;18573;18574;18575;18576;18577;18578;18579	25254;25255;25256;25257;25258;25259;25260;25261;25262;25263;25264;25265;25266	25262			13	
ALDLLYGMVSK	1	Unmodified	1208.6475	0.64749566	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.67		4						3	2	2	3	3	1	85.019	79.569	2	3.8224E-05	74474	160511_QHF_FH_JSI11i_2	97.456	74.028			1.2798	1.2639	173.13	9	6	Median	1.4445	1.2198	45.525	2	2	Median	1.0393	1.1926	299.41	3	2	Median	1.2798	1.2639	36.01	3	1	Median	1.673	1.9017	NaN	1	1	Median	2066300000	1904200000	162100000	45197000	15843000	29355000	1848100000	1804500000	43590000	120380000	59620000	60763000	52614000	24226000	28388000	3025	179	2852	18580;18581;18582;18583;18584;18585;18586;18587;18588	25267;25268;25269;25270;25271;25272;25273;25274;25275;25276	25271			10	
ALDLLYGMVSKK	2	Unmodified	1336.7425	0.74245868	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	74.944	73.885	3	0.00056668	63924	160511_QHF_FH_JSI12i_3	69.716	62.346			1.7986	1.7459	19.874	3	3	Median	1.7986	1.5466	NaN	1	1	Median	1.9412	2.2807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7717	1.7459	NaN	1	1	Median	46181000	20446000	25735000	6630500	2229300	4401200	9119500	3434600	5684900	0	0	0	30431000	14782000	15649000	3026	179	2853	18589;18590;18591	25277;25278;25279	25279			3	
ALDLVAAK	1	Unmodified	799.48035	0.48035398	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	38.647	38.011	2	0.0020959	32483	160511_QHF_FH_JSI11i_2	82.671	13.288			0.99034	1.0631	19.628	8	0	Median	1.4448	1.2298	NaN	1	0	Median	1.0149	1.2013	19.4	2	0	Median	1.0736	1.0791	13.965	3	0	Median	0.78629	0.85402	20.429	2	0	Median	1061500000	516290000	545230000	117740000	57294000	60450000	329090000	170300000	158790000	392350000	174910000	217440000	222330000	113790000	108550000	3027	313	2854	18592;18593;18594;18595;18596;18597;18598;18599	25280;25281;25282;25283;25284;25285;25286;25287;25288;25289;25290	25287			11	
ALDLVSDPEYINLMK	1	Unmodified	1719.8753	0.87532334	4787	Q9H8M7	FAM188A	Protein FAM188A	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			93.928	93.918	2	0.00032315	85120	160511_QHF_FH_JSI10i_1	97.911	63.024			0.56647	0.63774	13.282	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56647	0.63774	13.282	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27807000	18539000	9267800	0	0	0	27807000	18539000	9267800	0	0	0	0	0	0	3028	4787	2855	18600;18601	25291;25292;25293	25293			3	
ALDMLDAEK	1	Unmodified	1004.4848	0.48484701	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.708	45.282	2	0.00010945	40687	160511_QHF_FH_JSI10i_1	110.87	76.064			6.4262	7.6306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.4262	7.6306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	741320000	80597000	660730000	0	0	0	741320000	80597000	660730000	0	0	0	0	0	0	3029	4831	2856	18602	25294	25294			1	
ALDMSYDHKPEDEVELAR	1	Unmodified	2116.9735	0.97353384	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.36	0.481		7	4							2		4	5	51.78	51.14	3;4	8.557E-18	43736	160511_QHF_FH_JSI12i_3	168.89	152.77			1.0141	1.0398	7.9411	10	1	Median	1.2496	1.0607	1.5206	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0459	1.0407	7.3179	4	0	Median	0.934	1.0092	10.03	4	0	Median	1446800000	729380000	717410000	154980000	78951000	76033000	0	0	0	597540000	311180000	286360000	694270000	339250000	355010000	3030	279	2857	18603;18604;18605;18606;18607;18608;18609;18610;18611;18612;18613	25295;25296;25297;25298;25299;25300;25301;25302;25303;25304;25305;25306;25307	25307			13	
ALDPADQHLR	0	Acetyl (Protein N-term)	1176.5887	0.58873523	3298	Q7Z7K0	CMC1	COX assembly mitochondrial protein homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.2	3					2	2			1	2	1	3	43.501	37.68	2	6.5989E-06	34185	160511_QHF_FH_JSI11i_1	107.57	79.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3031	3298	2858	18614;18615;18616;18617;18618;18619;18620	25308;25309;25310;25311;25312;25313;25314	25308			7	
ALDPPQLQVISNAMNLLR	0	Unmodified	1992.0826	0.082630778	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.34	102.35	2	0.0028163	89101	160511_QHF_FH_JSI12i_3	71.344	50.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3032	3267	2859	18621	25315	25315			1	
ALDQASEEIWNDFR	0	Unmodified	1692.7744	0.77436375	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	83.639	82.973	2	8.8566E-08	75429	160511_QHF_FH_JSI10i_1	184.34	126.81			1.0144	1.1786	20.47	5	3	Median	1.5521	1.2481	NaN	1	1	Median	1.1545	1.3784	22.15	2	2	Median	0.96678	0.94911	NaN	1	0	Median	0.95341	1.0255	NaN	1	0	Median	253450000	132780000	120680000	12785000	4409800	8374800	132450000	70813000	61634000	64578000	35942000	28636000	43644000	21613000	22031000	3033	1712	2860	18622;18623;18624;18625;18626	25316;25317;25318;25319;25320;25321;25322	25318			7	
ALDQASEEIWNDFREAAEAHR	0	Unmodified	2457.1309	0.13091419	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		92.747	92.535	4	1.0123E-05	82089	160511_QHF_FH_JSI11i_3	63.184	54.793			1.2794	1.1822	18.072	3	0	Plateau	1.087	0.95632	NaN	1	0	Median	0.69918	0.82516	NaN	1	0	Median	1.2794	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76979000	33193000	43786000	16896000	6573300	10323000	16033000	9425600	6607400	44049000	17194000	26855000	0	0	0	3034	1712	2861	18627;18628;18629	25323;25324;25325	25323			3	
ALDQFVNFSEQK	1	Unmodified	1424.6936	0.69359423	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	3.83	6	3					1			2	3	3	2	67.352	65.605	2	1.3334E-38	59561	160511_QHF_FH_JSI10i_1	180.19	131.4			0.96774	0.99707	11.421	9	4	Median	1.166	0.99857	0.21211	2	1	Median	0.81059	0.98292	4.3149	2	1	Median	1.0427	1.0536	9.0907	3	2	Plateau	1.0602	1.1291	22.736	2	0	Median	778560000	390860000	387700000	168330000	78214000	90117000	191470000	104080000	87386000	322520000	165280000	157240000	96236000	43288000	52948000	3035	5479	2862	18630;18631;18632;18633;18634;18635;18636;18637;18638;18639	25326;25327;25328;25329;25330;25331;25332;25333;25334;25335;25336;25337;25338;25339;25340;25341;25342;25343	25332			18	
ALDQSDNDMSAVYR	0	Oxidation (M)	1599.6835	0.68349983	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				42.018	40.804	2	0.00014676	36137	160511_QHF_FH_JSI9i_1	74.326	55.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3036	2827	2863	18640	25344	25344		2152	1	
ALDSDMQTLVYENYNK	1	Unmodified	1902.8669	0.8669435	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	70.691	70.096	3	0.021807	63876	160511_QHF_FH_JSI12i_1	44.312	39.843			0.8735	0.87668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8735	0.87668	NaN	1	0	Median	17211000	9459200	7751400	0	0	0	0	0	0	0	0	0	17211000	9459200	7751400	3037	5329	2864	18641	25345	25345			0	
ALDSNSLENDDLSAPGREPGHFNPESR	0	Unmodified	2923.3333	0.33325541	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		53.49	52.582	3;4	4.6463E-15	46639	160511_QHF_FH_JSI11i_3	98	91.567			1.1985	1.044	4.771	3	0	Plateau	1.1985	1.004	NaN	1	0	Median	0.90041	1.044	NaN	1	0	Median	1.1338	1.104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	185390000	79234000	106150000	79894000	33226000	46668000	42582000	18709000	23873000	62912000	27299000	35613000	0	0	0	3038	2804	2865	18642;18643;18644;18645	25346;25347;25348;25349;25350;25351	25346			6	
ALDTMNFDVIK	1	Unmodified	1265.6326	0.63257388	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.41	7	4	1				2			3	3	4	4	75.156	73.135	2	9.7206E-49	64709	160511_QHF_FH_JSI11i_2	224.64	186.92			0.98061	1.0122	10.57	14	9	Median	1.1856	0.98768	6.3924	3	2	Median	0.87497	1.0507	5.7135	3	1	Plateau	1.0338	1.0317	19.828	4	3	Median	0.93075	1.0124	4.657	4	3	Median	10168000000	5269600000	4898900000	1931600000	888240000	1043400000	1719200000	952060000	767180000	3302400000	1712600000	1589800000	3215200000	1716700000	1498500000	3039	2385;1009	2866	18646;18647;18648;18649;18650;18651;18652;18653;18654;18655;18656;18657;18658;18659	25352;25353;25354;25355;25356;25357;25358;25359;25360;25361;25362;25363;25364;25365;25366;25367;25368;25369;25370;25371;25372;25373;25374;25375;25376	25372			25	
ALDTMNFDVIK	1	Oxidation (M)	1281.6275	0.6274885	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.14	5					1	2			1	4	1	2	65.952	61.209	2	8.1241E-08	32582	160513_QHF_FH_JSI10Kac_4	117.14	90.134			1.0614	1.0229	16.195	7	0	Median	1.2288	1.0229	NaN	1	0	Median	0.77899	0.92846	17.479	3	0	Plateau	1.0614	1.0542	NaN	1	0	Median	1.1444	1.2191	25.691	2	0	Median	457330000	228740000	228590000	87168000	34926000	52242000	101070000	69322000	31748000	130210000	64283000	65929000	138880000	60207000	78673000	3040	2385;1009	2866	18660;18661;18662;18663;18664;18665;18666;18667	25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388	25381		592	12	
ALDVADLQK	1	Unmodified	971.52876	0.52876073	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.384	43.718	2	3.5315E-05	39450	160511_QHF_FH_JSI11i_1	100.02	44.487			0.87195	1.0735	9.6555	4	0	Linear	1.2645	1.0576	NaN	1	0	Median	0.78197	0.93208	NaN	1	0	Median	1.1067	1.0896	NaN	1	0	Median	1.1354	1.1753	NaN	1	0	Median	684870000	353080000	331790000	145920000	71807000	74116000	188390000	111250000	77145000	180780000	89608000	91172000	169780000	80417000	89361000	3041	3074	2867	18668;18669;18670;18671	25389;25390;25391;25392;25393;25394;25395	25390			7	
ALDVGSGSGILTACFAR	0	Unmodified	1693.8458	0.84575455	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	80.291	79.638	2;3	1.0849E-22	71229	160511_QHF_FH_JSI11i_3	229.75	202.86			1.171	1.2014	28.934	7	3	Median	1.171	0.99772	NaN	1	1	Median	0.96742	1.2014	NaN	1	0	Median	0.87853	0.85031	10.761	2	0	Median	1.3949	1.5243	13.879	3	2	Median	240330000	123080000	117240000	7228400	3412400	3816000	29732000	15017000	14716000	97385000	58125000	39261000	105980000	46531000	59451000	3042	1202	2868	18672;18673;18674;18675;18676;18677;18678	25396;25397;25398;25399;25400;25401;25402;25403;25404;25405	25396			10	
ALDVIQAGK	1	Unmodified	913.52328	0.52328142	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		44.662	34.445	2	0.0076525	20558	160513_QHF_FH_JSI11Kac_4	73.248	29.44			0.36961	0.36809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36961	0.36809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4794600	3272000	1522500	0	0	0	0	0	0	4794600	3272000	1522500	0	0	0	3043	587	2869	18679	25406	25406			1	
ALDVMVSTFHK	1	Oxidation (M)	1262.6329	0.63290823	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.31		7	7				1	12	8	8	9	9	9	50.791	44.893	2;3	7.8251E-20	24556	160513_QHF_FH_JSI10Kac_6	163.64	134.55			0.94647	0.94768	20.785	31	5	Median	1.2001	1.0647	37.714	6	1	Median	0.77338	0.93054	12.329	8	1	Median	0.90589	0.87588	10.227	9	2	Median	1.0178	1.0777	7.7939	8	1	Median	10672000000	5416100000	5255400000	1975000000	878190000	1096800000	2274900000	1260500000	1014300000	2680800000	1394200000	1286600000	3740900000	1883200000	1857600000	3044	1278	2870	18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691;18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714	25407;25408;25409;25410;25411;25412;25413;25414;25415;25416;25417;25418;25419;25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441;25442;25443;25444;25445;25446;25447;25448;25449;25450;25451;25452;25453;25454;25455;25456;25457;25458;25459;25460;25461	25460		911	55	
ALDVMVSTFHK	1	Unmodified	1246.638	0.63799361	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.37	1	4	7					10	8	9	8	6	7	61.192	55.006	2;3	2.6542E-48	46952	160511_QHF_FH_JSI12i_3	223.08	194.68			1.0469	0.9629	35.84	29	4	Median	1.0809	0.91712	65.07	8	2	Median	0.79968	0.94665	7.0461	8	0	Median	1.0898	1.0379	9.079	6	0	Median	1.0762	1.1043	26.747	7	2	Median	55664000000	25517000000	30147000000	8116900000	3502200000	4614600000	10584000000	5490600000	5093400000	17453000000	7954300000	9499200000	19510000000	8570400000	10940000000	3045	1278	2870	18715;18716;18717;18718;18719;18720;18721;18722;18723;18724;18725;18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738;18739;18740;18741;18742;18743;18744	25462;25463;25464;25465;25466;25467;25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494;25495;25496;25497;25498;25499;25500;25501;25502;25503;25504;25505;25506;25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518;25519;25520;25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534;25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545;25546	25533			84	
ALDVMVSTFHKYSGK	2	Acetyl (K);Oxidation (M)	1739.8553	0.8552566	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		67.322	57.717	3	0.041339	31211	160513_QHF_FH_JSI11Kac_6	31.42	26.341			0.27858	0.26173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27858	0.26173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145850000	112380000	33470000	0	0	0	0	0	0	145850000	112380000	33470000	0	0	0	3046	1278	2871	18745	25547	25547	1187;1188	911	1	
ALDVMVSTFHKYSGK	2	Acetyl (K)	1723.8603	0.86034198	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	76.694	68.456	2;3	1.7513E-44	37063	160513_QHF_FH_JSI11Kac_6	233.37	190.28			0.51241	0.46285	181.05	4	2	Median	0.81083	0.69315	NaN	1	0	Median	7.4972	8.8832	NaN	1	1	Median	0.32382	0.30906	NaN	1	0	Median	0.12423	0.1349	NaN	1	1	Median	1104600000	750690000	353940000	100410000	60528000	39883000	183110000	31787000	151330000	760020000	599390000	160630000	61092000	58993000	2098900	3047	1278	2871	18746;18747;18748;18749;18750;18751;18752	25548;25549;25550;25551;25552;25553;25554	25549	1187;1188		7	
ALDVSASDDEIAR	0	Unmodified	1360.647	0.64703797	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		51.288	41.871	2	9.5324E-08	22985	160513_QHF_FH_JSI11Kac_3	105.86	72.639			0.9909	1.0578	14.255	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99332	1.17	NaN	1	0	Median	0.98848	0.95642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7044300	3355200	3689100	0	0	0	3482200	1683400	1798800	3562100	1671800	1890300	0	0	0	3048	1040	2872	18753;18754	25555;25556	25555			2	
ALDYYMLR	0	Unmodified	1043.511	0.51100218	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	62.778	58.937	2	0.00045826	51174	160511_QHF_FH_JSI11i_2	107.59	67.526			1.0085	1.0101	7.2958	6	0	Median	1.0811	0.92341	NaN	1	0	Median	0.73267	0.8954	NaN	1	0	Median	1.047	1.0409	3.9345	2	0	Median	0.96004	1.0342	3.6554	2	0	Median	956240000	479250000	476990000	154360000	73511000	80845000	224700000	118200000	106500000	323460000	146850000	176610000	253730000	140690000	113030000	3049	5616	2873	18755;18756;18757;18758;18759;18760	25557;25558;25559;25560;25561;25562	25561			6	
ALDYYMLR	0	Oxidation (M)	1059.5059	0.5059168	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	57.678	47	2	0.011987	24086	160513_QHF_FH_JSI12Kac_5	60.76	44.606			1.176	1.3227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.176	1.3227	NaN	1	0	Median	4414100	1872500	2541700	0	0	0	0	0	0	0	0	0	4414100	1872500	2541700	3050	5616	2873	18761	25563	25563		2712	1	
ALEAAHGPGQANQEIAAMIDTEFAK	1	Unmodified	2582.2435	0.24350111	2703	Q15750	TAB1	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	88.395	88.284	3	1.0163E-23	76693	160511_QHF_FH_JSI12i_3	145.25	138.59			1.0762	1.0766	11.176	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0762	1.0766	11.176	2	2	Median	158230000	75136000	83091000	0	0	0	0	0	0	0	0	0	158230000	75136000	83091000	3051	2703	2874	18762;18763;18764;18765	25564;25565;25566;25567;25568;25569	25569			6	
ALEAAQIIIDVLQLPMSK	1	Unmodified	1952.1016	0.10163489	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	103.78	103.73	2;3	1.595E-22	90517	160511_QHF_FH_JSI12i_3	195.43	175.23			0.96	0.96766	26.755	8	0	Median	0.84284	0.73065	NaN	1	0	Median	0.68113	0.83784	NaN	1	0	Median	1.0738	1.1436	30.438	3	0	Median	1.064	1.082	19.39	3	0	Plateau	240620000	118970000	121650000	13791000	6945400	6845400	21405000	11723000	9682600	72837000	35394000	37442000	132590000	64911000	67678000	3052	2274	2875	18766;18767;18768;18769;18770;18771;18772;18773;18774	25570;25571;25572;25573;25574;25575;25576;25577;25578;25579;25580;25581;25582	25581			13	
ALEAAQIIIDVLQLPMSK	1	Oxidation (M)	1968.0965	0.096549507	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	103.05	103.06	3	0.00017612	89804	160511_QHF_FH_JSI12i_3	76.155	58.666			1.0559	1.1161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0559	1.1161	NaN	1	1	Median	58332000	26130000	32203000	0	0	0	0	0	0	0	0	0	58332000	26130000	32203000	3053	2274	2875	18775	25583	25583		1875	1	
ALEAFETFK	1	Unmodified	1054.5335	0.53351176	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.345	59.428	2	0.0019547	50914	160511_QHF_FH_JSI12i_2	75.825	64.314			0.66356	0.76238	35.626	4	3	Median	1.2935	1.0898	NaN	1	0	Median	0.53362	0.64242	NaN	1	1	Median	0.49348	0.48951	NaN	1	1	Median	0.82516	0.90474	NaN	1	1	Median	289060000	159120000	129940000	64736000	30993000	33742000	73957000	40610000	33347000	87439000	54514000	32925000	62931000	33004000	29927000	3054	2160	2876	18776;18777;18778;18779	25584;25585;25586;25587	25584			4	
ALEAFETFKK	2	Unmodified	1182.6285	0.62847478	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	3	1		49.275	48.253	2;3	0.00083256	40329	160511_QHF_FH_JSI10i_3	68.069	58.381			0.46012	0.51771	59.419	4	4	Median	NaN	NaN	NaN	0	0	Median	0.46665	0.5251	64.639	3	3	Median	0.45369	0.43552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	670740000	362740000	307990000	0	0	0	228760000	130800000	97965000	441980000	231950000	210030000	0	0	0	3055	2160	2877	18780;18781;18782;18783;18784	25588;25589;25590;25591;25592	25590			5	
ALEAFETFKK	2	Acetyl (K)	1224.639	0.63903946	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	75.36	64.816	2	0.037533	32058	160513_QHF_FH_JSI12Kac_5	57.598	26.226			0.12779	0.14	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12779	0.14	NaN	1	1	Median	902320	835980	66339	0	0	0	0	0	0	0	0	0	902320	835980	66339	3056	2160	2877	18785	25593	25593			1	
ALEALVAK	1	Unmodified	813.496	0.49600404	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.26		4					2	2		1	3	3	1	43.949	38.269	2	0.0028778	32595	160511_QHF_FH_JSI12i_2	76.774	48.52			0.82579	0.84628	59.372	8	4	Median	0.79021	0.68443	NaN	1	1	Median	0.49489	0.60037	54.529	3	1	Plateau	0.40887	0.38821	80.622	3	2	Median	0.9828	1.1037	NaN	1	0	Median	759780000	403000000	356770000	122520000	61946000	60572000	147610000	69380000	78227000	219180000	137260000	81922000	270470000	134420000	136050000	3057	1054	2878	18786;18787;18788;18789;18790;18791;18792;18793	25594;25595;25596;25597;25598;25599;25600;25601	25594			8	
ALEAVFGK	1	Unmodified	833.4647	0.46470391	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.92	3	2	2				1	2		2	3	2	3	48.807	44.937	2	0.0012589	36876	160511_QHF_FH_JSI9i_3	91.9	40.328			1.0362	0.9841	34.449	10	3	Median	1.0811	0.90552	3.5204	2	0	Median	1.3568	1.6529	18.311	3	3	Median	0.9995	0.9841	7.0094	2	0	Median	0.72952	0.77007	16.354	3	0	Plateau	1000700000	454000000	546750000	329630000	147270000	182360000	467060000	202340000	264730000	146620000	71242000	75373000	57441000	33143000	24298000	3058	1474	2879	18794;18795;18796;18797;18798;18799;18800;18801;18802;18803	25602;25603;25604;25605;25606;25607;25608;25609;25610	25606			9	
ALEAVFGKYGR	1	Acetyl (K)	1251.6612	0.66117189	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		74.006	63.383	2	0.0055274	33897	160513_QHF_FH_JSI11Kac_5	70.056	44.435			1.0579	1.1447	9.5684	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90487	1.0698	NaN	1	0	Median	1.2368	1.2249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13090000	5926900	7162800	0	0	0	3997300	1958000	2039300	9092500	3968900	5123600	0	0	0	3059	1474	2880	18804;18805	25611;25612	25611	1462		2	
ALEDAFLAIDAK	1	Unmodified	1275.6711	0.67106787	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	78.95	78.475	2	9.7196E-11	71232	160511_QHF_FH_JSI10i_1	145.46	106.31			0.81935	0.84129	34.63	5	2	Median	NaN	NaN	NaN	0	0	Median	0.56842	0.66784	49.479	2	1	Median	0.67855	0.65656	35.061	2	1	Median	0.93091	0.96213	NaN	1	0	Median	361550000	217250000	144300000	0	0	0	148060000	94928000	53127000	140030000	84851000	55183000	73461000	37474000	35987000	3060	279	2881	18806;18807;18808;18809;18810	25613;25614;25615;25616;25617;25618;25619;25620	25618			8	
ALEDLAGFK	1	Unmodified	962.5073	0.50729701	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	57.048	56.173	2	0.0012609	47976	160511_QHF_FH_JSI12i_2	69.825	45.67			1.76	2.022	64.231	2	1	Median	NaN	NaN	NaN	0	0	Median	2.7442	3.1844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1288	1.2839	NaN	1	0	Median	189600000	35709000	153890000	0	0	0	153620000	19121000	134490000	0	0	0	35985000	16588000	19397000	3061	1576	2882	18811;18812;18813;18814;18815	25621;25622;25623;25624;25625	25621			5	
ALEDLHK	1	Unmodified	824.43922	0.43921744	1118	P17535	JUND	Transcription factor jun-D	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.969	13.746	2	0.033819	10887	160511_QHF_FH_JSI11i_2	51.787	1.6607			2.619	2.6938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.619	2.6938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76177000	26828000	49349000	0	0	0	0	0	0	76177000	26828000	49349000	0	0	0	3062	1118	2883	18816	25626	25626			1	
ALEDLVDFK	1	Unmodified	1048.5441	0.54407645	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	72.314	71.709	2	3.3191E-05	65205	160511_QHF_FH_JSI11i_1	100.98	81.197			1.0396	1.026	47.895	4	1	Median	NaN	NaN	NaN	0	0	Median	0.40192	0.45248	NaN	1	1	Median	1.0382	0.99981	NaN	1	0	Median	1.143	1.2032	18.877	2	0	Median	132270000	64884000	67384000	0	0	0	34099000	22864000	11235000	48285000	21416000	26870000	49884000	20604000	29280000	3063	1576	2884	18817;18818;18819;18820	25627;25628;25629;25630;25631	25628			5	
ALEDMFDALEGK	1	Unmodified	1337.6173	0.61731774	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		90.834	90.317	2	0.059697	79490	160511_QHF_FH_JSI11i_2	42.243	34.356			47.004	48.709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47.004	48.709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	626020000	16490000	609530000	0	0	0	0	0	0	626020000	16490000	609530000	0	0	0	3064	1240	2885	18821	25632	25632			1	
ALEEAGFK	1	Unmodified	863.43888	0.43888309	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.67	6.13	1						2				1	1	1	30.767	25.956	2	0.0046389	16099	160513_QHF_FH_JSI11Kac_4	68.787	5.4806			0.98106	1.1106	4.4078	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96558	1.1458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99679	1.0766	NaN	1	0	Median	223940000	125640000	98302000	0	0	0	218060000	122740000	95317000	0	0	0	5876100	2890800	2985200	3065	1122	2886	18822;18823;18824	25633;25634;25635	25634			3	
ALEEAMEQK	1	Oxidation (M)	1063.4856	0.48557529	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	9					3				2	4	3	3	15.37	12.6	2	4.3039E-06	7507	160511_QHF_FH_JSI9i_1	124.98	101.94			1.1453	1.1335	40.583	9	0	Median	1.0038	0.81313	47.446	2	0	Median	0.90999	1.0733	NaN	1	0	Median	1.2653	1.2499	50.723	3	0	Median	1.1304	1.1849	8.4219	3	0	Plateau	1037700000	444840000	592810000	344010000	143690000	200320000	3384700	1819600	1565000	296440000	102420000	194020000	393820000	196910000	196910000	3066	1436	2887	18825;18826;18827;18828;18829;18830;18831;18832;18833;18834;18835;18836	25636;25637;25638;25639;25640;25641;25642;25643;25644;25645;25646;25647;25648;25649;25650	25645		1092	14	
ALEEAMEQK	1	Unmodified	1047.4907	0.49066067	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	1	2	21.876	21.279	2	1.2067E-06	18487	160511_QHF_FH_JSI12i_1	133.86	98.507			0.68405	0.60807	74.598	6	4	Median	1.3921	1.1326	95.547	2	2	Median	0.763	0.91214	118.74	2	2	Median	0.66799	0.64155	NaN	1	0	Median	0.50788	0.54011	NaN	1	0	Median	5087000000	2490900000	2596100000	1727300000	695200000	1032100000	1426500000	772470000	654000000	961010000	504750000	456270000	972170000	518500000	453670000	3067	1436	2887	18837;18838;18839;18840;18841;18842;18843	25651;25652;25653;25654;25655;25656;25657;25658	25653			7	
ALEEANTELEVK	1	Unmodified	1344.6773	0.67727546	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					1	2	2	47.293	41.518	2	6.7309E-05	37286	160511_QHF_FH_JSI12i_1	135.8	81.452		+	0.74842	0.76872	18.707	5	3	Median	NaN	NaN	NaN	0	0	Median	0.6571	0.76872	NaN	1	1	Median	0.84796	0.84222	21.659	2	1	Median	0.85626	0.9202	26.555	2	1	Median	973290000	607900000	365400000	0	0	0	4683500	2617600	2065900	632070000	377320000	254750000	336540000	227960000	108580000	3068	65	2888	18844;18845;18846;18847;18848	25659;25660;25661;25662;25663;25664	25660			5	
ALEEDLNQK	1	Unmodified	1058.5244	0.52440364	607	O94804	STK10	Serine/threonine-protein kinase 10	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			22.656	22.38	2	0.0078657	19495	160511_QHF_FH_JSI10i_1	53.753	21.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3069	607	2889	18849	25665	25665			1	
ALEEELAGLK	1	Unmodified	1071.5812	0.58119023	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	55.531	54.823	2	4.0236E-26	49961	160511_QHF_FH_JSI12i_1	195.27	83.099			0.98989	1.0037	12.154	5	1	Median	1.2305	1.0037	NaN	1	0	Median	0.81522	0.97886	23.446	2	1	Median	1.0756	1.0588	NaN	1	0	Median	0.97726	1.0037	NaN	1	0	Median	715180000	327240000	387930000	125850000	58053000	67794000	225950000	103840000	122110000	175230000	72610000	102620000	188150000	92742000	95405000	3070	679	2890	18850;18851;18852;18853;18854	25666;25667;25668;25669;25670;25671;25672;25673	25669			8	
ALEEGDGSVSGSSPR	0	Unmodified	1446.6587	0.65866529	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.015	18.646	2	6.3021E-05	16021	160511_QHF_FH_JSI10i_1	88.441	81.552			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3071	3523	2891	18855;18856	25674;25675	25675			2	
ALEEKPNNPEFSSGLAIAMYHLDNHPEK	2	Unmodified	3150.508	0.50804865	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		75.857	75.857	5	0.0021271	67639	160511_QHF_FH_JSI11i_3	30.602	28.492			0.61445	0.56012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61445	0.56012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39297000	21319000	17978000	0	0	0	0	0	0	39297000	21319000	17978000	0	0	0	3072	213	2892	18857	25676;25677	25676			2	
ALEENNNFSK	1	Unmodified	1164.5411	0.54111633	3925	Q93045	STMN2	Stathmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.6	4	4	2			2	3			3	4	4	4	22.105	18.802	2	6.4956E-19	16261	160511_QHF_FH_JSI11i_1	174.41	0			1.0031	1.009	20.716	14	1	Median	1.1351	0.95775	6.1658	2	0	Median	0.8904	1.0823	34.481	4	1	Median	0.97659	0.96159	7.3549	4	0	Median	1.0698	1.17	13.101	4	0	Median	8382800000	4563600000	3819200000	1722500000	798400000	924130000	2476400000	1553300000	923100000	1999200000	1023900000	975320000	2184700000	1188000000	996660000	3073	3925	2893	18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870;18871;18872	25678;25679;25680;25681;25682;25683;25684;25685;25686;25687;25688;25689;25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700	25680			23	
ALEEPGPAADPTAFQGPWAR	0	Unmodified	2080.0014	0.0014035686	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		78.054	77.806	2	6.8952E-06	70788	160511_QHF_FH_JSI11i_1	108.17	98.637			0.98648	1.0354	4.3018	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94201	1.0673	NaN	1	0	Median	1.0331	1.0044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40346000	19610000	20736000	0	0	0	22691000	11088000	11603000	17655000	8522000	9132700	0	0	0	3074	3382	2894	18873;18874	25701;25702	25701			2	
ALEESESSQLISPPLAQAIR	0	Unmodified	2138.1219	0.12191263	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								2	5	4	2	81.314	80.854	2;3	1.5619E-42	71775	160511_QHF_FH_JSI9i_1	216.37	187.56			0.95004	0.98969	9.7608	10	3	Median	1.3468	1.0911	3.6848	2	0	Median	0.8363	0.97606	12.295	4	3	Median	1.006	0.96148	3.964	2	0	Median	0.95004	0.98486	4.6785	2	0	Median	430060000	212700000	217360000	94137000	38232000	55905000	139950000	77899000	62046000	112490000	55080000	57415000	83479000	41490000	41989000	3075	1526	2895	18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886;18887	25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720;25721;25722;25723	25717			21	
ALEESNYELEGK	1	Unmodified	1380.6409	0.64088996	56	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		36.76	36.147	2	1.5784E-05	32393	160511_QHF_FH_JSI11i_1	93.096	54.792		+	1.5734	1.3106	33.237	3	2	Median	1.5734	1.3106	NaN	1	0	Median	1.7051	2.0526	NaN	1	1	Median	1.0984	1.0725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213440000	95299000	118140000	77636000	41557000	36079000	81676000	34168000	47508000	54127000	19574000	34553000	0	0	0	3076	56	2896	18888;18889;18890;18891	25724;25725;25726;25727;25728	25725			5	
ALEEVPIHIEDPPFPSLR	0	Unmodified	2058.0786	0.078591257	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	93.333	92.948	3	0.00080959	81726	160511_QHF_FH_JSI9i_2	49.708	44.499			0.93951	0.98445	6.7231	6	4	Median	1.1525	1.006	NaN	1	0	Median	0.74241	0.90232	NaN	1	1	Median	0.95946	0.9863	3.3256	2	2	Median	0.887	0.9463	11.665	2	1	Median	208850000	101660000	107190000	31478000	12059000	19419000	37397000	23211000	14186000	78420000	35030000	43390000	61558000	31359000	30199000	3077	3003	2897	18892;18893;18894;18895;18896;18897;18898	25729;25730;25731;25732;25733;25734;25735;25736	25731			8	
ALEEVPIHIEDPPFPSLRQEK	1	Unmodified	2443.2747	0.27472488	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		82.91	82.91	4	0.0031516	74042	160511_QHF_FH_JSI11i_3	42.118	28.93			1.1479	1.0713	31.727	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1479	1.0713	31.727	2	2	Median	NaN	NaN	NaN	0	0	Median	69906000	23339000	46567000	0	0	0	0	0	0	69906000	23339000	46567000	0	0	0	3078	3003	2898	18899;18900	25737;25738	25738			2	
ALEFIPSDQQNEMVR	0	Unmodified	1775.8512	0.85123386	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.615	67.029	2	0.00013296	60975	160511_QHF_FH_JSI11i_1	96.82	73.594			1.0096	0.95228	6.8795	4	0	Median	1.1912	0.93727	NaN	1	0	Median	0.77417	0.9009	NaN	1	0	Median	0.98552	0.96752	NaN	1	0	Median	1.0343	1.0589	NaN	1	0	Median	140760000	72164000	68594000	25842000	11787000	14056000	39907000	23510000	16396000	41773000	21089000	20684000	33236000	15778000	17458000	3079	2555	2899	18901;18902;18903;18904	25739;25740;25741;25742;25743;25744;25745;25746	25740			8	
ALEFVTNPDIAAK	1	Unmodified	1387.7347	0.73473076	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	66.008	65.572	2	2.8798E-09	58367	160511_QHF_FH_JSI9i_1	104.43	66.885			1.2616	1.21	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2616	1.21	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37337000	14070000	23267000	0	0	0	0	0	0	37337000	14070000	23267000	0	0	0	3080	557	2900	18905;18906;18907	25747;25748;25749	25749			3	
ALEHAFQLEHIMDLTR	0	Unmodified	1922.9673	0.96726667	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	80.797	80.61	2;3;4	5.1727E-11	71832	160511_QHF_FH_JSI11i_3	144.33	133.03			0.80239	0.79931	31.662	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2846	1.1952	NaN	1	0	Median	0.72644	0.73276	27.501	4	3	Median	358650000	196540000	162110000	0	0	0	0	0	0	73354000	30929000	42425000	285300000	165610000	119680000	3081	2517	2901	18908;18909;18910;18911;18912;18913	25750;25751;25752;25753;25754;25755;25756	25750			7	
ALEHFPMLQK	1	Unmodified	1212.6325	0.6325143	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		52.343	51.717	3	1.3867E-05	45500	160511_QHF_FH_JSI9i_2	77.662	62.519			1.0975	1.0594	13.275	4	0	Median	1.4015	1.2139	NaN	1	0	Median	0.7441	0.90425	NaN	1	0	Median	1.0975	1.0594	9.6836	2	0	Median	NaN	NaN	NaN	0	0	Median	419600000	186450000	233160000	48934000	18499000	30435000	55096000	32612000	22483000	315570000	135330000	180240000	0	0	0	3082	1558	2902	18914;18915;18916;18917	25757;25758;25759;25760	25758			3	
ALEHFTDLYDIK	1	Unmodified	1463.7296	0.72964538	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.56		16	7						6	8	6	9	6	68.317	65.956	2;3	2.4967E-11	58600	160511_QHF_FH_JSI10i_2	144.57	129.89			0.98649	0.96218	24.147	26	19	Median	0.97487	0.83683	13.682	8	6	Median	0.9611	1.1481	17.5	4	2	Median	1.0639	1.0267	26.046	9	8	Median	0.85521	0.90677	36.029	5	3	Median	6687800000	3143400000	3544500000	1101000000	582020000	519020000	1463100000	697190000	765930000	3076600000	1371400000	1705200000	1047100000	492750000	554320000	3083	2155	2903	18918;18919;18920;18921;18922;18923;18924;18925;18926;18927;18928;18929;18930;18931;18932;18933;18934;18935;18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946	25761;25762;25763;25764;25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784;25785;25786;25787;25788;25789;25790;25791;25792;25793;25794;25795;25796;25797;25798;25799;25800	25787			40	
ALEHFTDLYDIKR	1	Unmodified	1619.8308	0.83075641	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							2	2	1		58.733	57.615	3;4	6.592E-05	50833	160511_QHF_FH_JSI11i_3	66.989	63.516			0.8885	0.83251	68.176	5	1	Median	3.101	2.5666	16.738	2	0	Median	0.6232	0.71247	2.0671	2	1	Median	0.8885	0.83251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	229080000	104300000	124780000	63595000	16829000	46766000	60474000	41243000	19231000	105010000	46228000	58782000	0	0	0	3084	2155	2904	18947;18948;18949;18950;18951	25801;25802;25803;25804	25801			3	
ALEHFTDLYDIKR	1	Acetyl (K)	1661.8413	0.8413211	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	76.384	67.768	2;3	1.5789E-39	36724	160513_QHF_FH_JSI11Kac_6	197.07	146.79			0.46137	0.47013	168.07	4	1	Median	NaN	NaN	NaN	0	0	Median	1.3067	1.5063	NaN	1	0	Median	0.10498	0.099342	165.84	2	1	Median	0.63518	0.68871	NaN	1	0	Median	357520000	278210000	79310000	0	0	0	85758000	38759000	46999000	212720000	200440000	12273000	59041000	39003000	20038000	3085	2155	2904	18952;18953;18954;18955	25805;25806;25807;25808	25805	2258		3	
ALEHKNR	1	Acetyl (K)	908.48281	0.48281359	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		5.9413	-3.4228	2;3	0.0052396	1932	160513_QHF_FH_JSI11Kac_6	104.21	39.406			0.047827	0.045476	211.15	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.047827	0.045476	211.15	2	2	Median	NaN	NaN	NaN	0	0	Median	80237000	76606000	3631300	0	0	0	0	0	0	80237000	76606000	3631300	0	0	0	3086	2502	2905	18956;18957	25809;25810	25810	2504		2	
ALEHLHSK	1	Unmodified	933.50321	0.50321468	1772;1587	P46734;P52564	MAP2K3;MAP2K6	Dual specificity mitogen-activated protein kinase kinase 3;Dual specificity mitogen-activated protein kinase kinase 6	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	6.044	5.8784	2;3	0.00095997	3394	160511_QHF_FH_JSI12i_3	64.04	17.578			0.97063	0.95419	13.322	5	1	Median	1.2565	1.0427	NaN	1	0	Median	0.6636	0.74914	NaN	1	0	Median	1.0308	0.95419	NaN	1	0	Median	0.89529	0.91552	11.087	2	1	Median	1947400000	1097300000	850070000	46337000	18553000	27785000	101230000	59549000	41679000	376940000	218080000	158860000	1422900000	801110000	621750000	3087	1587;1772	2906	18958;18959;18960;18961;18962	25811;25812;25813;25814;25815;25816;25817	25815			7	
ALEHSALAINHK	1	Unmodified	1302.7044	0.70443369	1126;4951	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							3	4	4	3	19.918	19.278	2;3;4	4.2612E-93	15453	160511_QHF_FH_JSI12i_3	258.52	221.05			0.95559	0.96837	25.544	13	2	Median	1.1639	0.95339	11.494	3	0	Median	0.86367	1.0128	48.249	4	2	Median	0.83388	0.78529	8.5399	3	0	Plateau	0.96034	0.97393	1.0816	3	0	Median	3703900000	1761600000	1942400000	231380000	113480000	117900000	495400000	265300000	230100000	867370000	367200000	500180000	2109800000	1015600000	1094200000	3088	1126;4951	2907	18963;18964;18965;18966;18967;18968;18969;18970;18971;18972;18973;18974;18975;18976	25818;25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837;25838;25839	25837			22	
ALEHVPNSVR	0	Unmodified	1120.5989	0.59890598	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.816	1	1	1								1	1	1	23.295	22.832	2;3	0.00036151	16267	160511_QHF_FH_JSI11i_3	56.359	45.454			1.1112	1.051	49.022	3	2	Median	NaN	NaN	NaN	0	0	Median	0.84834	1.051	NaN	1	1	Median	1.1112	1.0396	NaN	1	0	Median	2.4338	2.4432	NaN	1	1	Median	169060000	86433000	82625000	0	0	0	10146000	6906900	3239500	133940000	72824000	61115000	24973000	6702000	18271000	3089	623	2908	18977;18978;18979	25840;25841;25842;25843	25840			4	
ALEIFAYALQYFK	1	Unmodified	1575.8337	0.83371653	320	O43301	HSPA12A	Heat shock 70 kDa protein 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	3	1	1	1	98.267	89.604	2;3	1.1493E-19	53914	160513_QHF_FH_JSI10Kac_6	172.69	136.75			1.0252	0.94929	17.573	6	2	Median	1.4251	1.2207	14.917	3	2	Plateau	0.76347	0.89782	NaN	1	0	Median	0.73311	0.7137	NaN	1	0	Median	0.95855	1.0076	NaN	1	0	Median	464970000	223720000	241250000	193330000	74532000	118800000	103090000	60483000	42607000	97238000	62087000	35151000	71310000	26613000	44698000	3090	320	2909	18980;18981;18982;18983;18984;18985	25844;25845;25846;25847;25848;25849	25849			6	
ALEIIPR	0	Unmodified	810.49634	0.49633839	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.63	6.64	4	4	1				3	5	2	4	4	5	6	52.546	46.948	2	3.4368E-05	25861	160513_QHF_FH_JSI11Kac_5	128.38	53.665			1.0118	1.0296	11.808	18	3	Median	1.3219	1.1056	11.904	4	1	Median	0.90592	1.0815	5.2462	4	0	Linear	1.0092	0.9978	2.1101	5	1	Median	1.0144	1.1108	19.921	5	1	Median	6883900000	3261300000	3622600000	1023500000	448600000	574930000	1586000000	794690000	791360000	2869100000	1325800000	1543300000	1405100000	692140000	712990000	3091	4321	2910	18986;18987;18988;18989;18990;18991;18992;18993;18994;18995;18996;18997;18998;18999;19000;19001;19002;19003;19004	25850;25851;25852;25853;25854;25855;25856;25857;25858;25859;25860;25861;25862;25863;25864;25865;25866;25867;25868;25869;25870;25871;25872;25873;25874;25875;25876;25877;25878;25879;25880	25873			31	
ALEIYQHQVVVANILESR	0	Unmodified	2081.1269	0.12693843	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.14	80.914	3	5.0078E-12	70205	160511_QHF_FH_JSI12i_3	146.1	120.93			0.75566	0.77027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75566	0.77027	NaN	1	0	Median	57295000	33505000	23790000	0	0	0	0	0	0	0	0	0	57295000	33505000	23790000	3092	4821	2911	19005	25881;25882	25881			2	
ALEIYQTK	1	Unmodified	964.52295	0.52294707	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		33.333	32.993	2	0.014866	29476	160511_QHF_FH_JSI10i_1	60.436	15.989			0.38403	0.44269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38403	0.44269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85470000	59899000	25572000	0	0	0	85470000	59899000	25572000	0	0	0	0	0	0	3093	2258	2912	19006;19007	25883;25884	25883			2	
ALEKIDLK	2	Acetyl (K)	970.5699	0.56989727	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			60.417	49.727	2	0.024073	27245	160513_QHF_FH_JSI10Kac_4	60.019	17.15			0.83563	0.98291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83563	0.98291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9734500	5832000	3902500	0	0	0	9734500	5832000	3902500	0	0	0	0	0	0	3094	1484	2913	19008	25885	25885	1485;1486		1	
ALELAHLK	1	Unmodified	893.53345	0.53345218	3899	Q92887	ABCC2	Canalicular multispecific organic anion transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		4									2	1	1	35.083	34.166	3	0.0030133	31229	160511_QHF_FH_JSI10i_2	52.937	24.019			0.57738	1.08	28.724	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.8012	0.98981	21.205	2	0	Median	1.6182	1.6772	NaN	1	1	Median	0.96562	1.0144	NaN	1	0	Median	151880000	83742000	68140000	0	0	0	115150000	67274000	47878000	22805000	9179500	13625000	13925000	7288400	6637100	3095	3899	2914	19009;19010;19011;19012	25886;25887;25888	25888			3	
ALELDGQSVK	1	Unmodified	1058.5608	0.56078914	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	2	2	2	39.984	36.712	2	4.6676E-05	32276	160511_QHF_FH_JSI9i_1	93.598	22.218			0.87117	0.89988	22.915	7	1	Median	1.2401	1.0283	NaN	1	0	Median	0.5969	0.70673	34.169	2	0	Median	0.94917	0.91197	12.954	2	0	Median	0.91568	0.97445	19.44	2	1	Median	1273000000	664610000	608420000	215310000	106340000	108970000	407580000	248580000	159000000	328750000	153870000	174880000	321390000	155830000	165560000	3096	5434	2915	19013;19014;19015;19016;19017;19018;19019	25889;25890;25891;25892;25893;25894;25895	25894			7	
ALELDHKNAQAQQEFK	2	Acetyl (K)	1910.9486	0.94863972	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	55.025	44.4	3	4.0004E-05	24673	160513_QHF_FH_JSI10Kac_4	92.211	75.526			0.8601	0.97924	36.419	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82867	0.99598	6.9308	2	0	Median	0.47475	0.46554	NaN	1	0	Median	0.98421	1.0677	12.225	2	0	Median	35605000	20387000	15217000	0	0	0	14202000	6555200	7646900	10354000	7308900	3045000	11049000	6523200	4525300	3097	4294	2916	19020;19021;19022;19023;19024	25896;25897;25898;25899;25900;25901	25896	3110		6	
ALELDPDNETYK	1	Unmodified	1406.6565	0.65654002	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	3	2	53.096	48.032	2	1.395E-22	42554	160511_QHF_FH_JSI9i_1	170.72	120.9			1.1416	0.93234	40.124	8	4	Plateau	0.93769	0.76789	NaN	1	0	Median	1.1051	1.2813	47.116	2	1	Median	1.1476	1.0994	50.853	3	2	Plateau	1.0259	1.0966	16.655	2	1	Median	1300600000	677180000	623460000	312100000	165440000	146660000	332200000	203310000	128900000	333380000	145460000	187930000	322950000	162980000	159970000	3098	372	2917	19025;19026;19027;19028;19029;19030;19031;19032	25902;25903;25904;25905;25906;25907;25908;25909;25910;25911;25912;25913;25914;25915;25916;25917;25918;25919	25914			18	
ALELDQERK	1	Unmodified	1100.5826	0.58258722	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	17.91	17.471	2;3	1.4007E-06	14448	160511_QHF_FH_JSI11i_3	114.51	68.355			1.1568	1.2016	31.11	13	4	Median	1.1667	1.0081	2.014	2	0	Median	0.99599	1.2435	4.849	2	0	Median	1.2774	1.2447	18.035	4	0	Median	0.74304	0.78978	49.316	5	4	Median	2854800000	1266600000	1588200000	451190000	190890000	260300000	486960000	228110000	258850000	1096500000	440880000	655670000	820070000	406690000	413370000	3099	1426	2918	19033;19034;19035;19036;19037;19038;19039;19040;19041;19042;19043;19044;19045	25920;25921;25922;25923;25924;25925;25926;25927;25928;25929;25930;25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941	25923			22	
ALELDSNLYR	0	Unmodified	1192.6088	0.60880197	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	4.96	1	4	2				2			2	3	1	3	58.783	55.358	2	3.7285E-14	47435	160511_QHF_FH_JSI12i_2	161.79	104.23			1.0264	1.0417	27.205	8	1	Median	1.2286	1.0359	NaN	1	0	Median	0.79756	0.97987	44.093	3	0	Median	0.93854	0.96138	NaN	1	0	Median	0.96616	1.0546	18.058	3	1	Plateau	2986800000	1478800000	1508000000	542520000	247760000	294760000	590620000	308670000	281950000	539650000	252110000	287550000	1314000000	670260000	643780000	3100	1436	2919	19046;19047;19048;19049;19050;19051;19052;19053;19054	25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953;25954	25943			13	
ALELDSNNEK	1	Unmodified	1131.5408	0.54078198	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6	5	1				4	1			2	3	3	3	25.563	20.037	2	4.4682E-34	19798	160511_QHF_FH_JSI12i_1	206.78	158.94			1.0119	1.0319	15.24	10	1	Median	1.2022	0.97101	11.523	2	0	Median	0.77608	0.89898	21.294	3	1	Median	1.0284	1.0143	4.6699	2	0	Median	1.0104	1.1044	1.5999	3	0	Plateau	6538300000	3092800000	3445500000	1387500000	599110000	788430000	1381200000	785750000	595420000	1686100000	721190000	964960000	2083400000	986700000	1096700000	3101	2193	2920	19055;19056;19057;19058;19059;19060;19061;19062;19063;19064;19065	25955;25956;25957;25958;25959;25960;25961;25962;25963;25964;25965;25966;25967;25968;25969;25970;25971	25958			17	
ALELENDRLLLK	1	Unmodified	1425.8191	0.81912909	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	64.956	64.432	2;3	8.3824E-06	57210	160511_QHF_FH_JSI11i_3	111.63	91.989			1.1138	1.0859	13.867	8	1	Median	1.2927	1.0956	NaN	1	0	Median	0.86682	1.0554	NaN	1	0	Median	1.1911	1.1243	15.362	3	0	Plateau	1.0793	1.0763	20.42	3	1	Median	1047200000	532030000	515120000	65132000	26604000	38528000	115350000	60300000	55053000	310720000	147080000	163640000	555950000	298040000	257910000	3102	2207	2921	19066;19067;19068;19069;19070;19071;19072;19073	25972;25973;25974;25975;25976;25977;25978;25979;25980	25974			9	
ALELEQER	0	Unmodified	986.50327	0.50327426	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				2	1		25.188	24.96	2	0.00057467	21933	160511_QHF_FH_JSI11i_1	103.74	29.612			0.8469	0.89034	16.214	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69286	0.7939	NaN	1	0	Median	1.0352	0.9985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	832840000	425710000	407130000	0	0	0	323330000	186530000	136810000	509500000	239180000	270320000	0	0	0	3103	1270	2922	19074;19075;19076	25981;25982;25983;25984	25981			4	
ALELEQERK	1	Unmodified	1114.5982	0.59823728	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.01		9	6					8		3	6	5	9	21.184	16.992	2;3	9.8435E-09	14215	160511_QHF_FH_JSI11i_3	153.24	50.731			0.91962	0.95381	19.469	19	2	Median	0.91325	0.74751	9.1166	3	0	Median	0.84629	1.026	14.448	6	2	Median	1.0294	1.0141	17.795	5	0	Median	0.93015	0.96447	18.597	5	0	Median	10860000000	5360600000	5499200000	1615200000	913650000	701520000	2283300000	1253300000	1030000000	3466400000	1527100000	1939300000	3494800000	1666400000	1828400000	3104	1270	2923	19077;19078;19079;19080;19081;19082;19083;19084;19085;19086;19087;19088;19089;19090;19091;19092;19093;19094;19095;19096;19097;19098;19099	25985;25986;25987;25988;25989;25990;25991;25992;25993;25994;25995;25996;25997;25998;25999;26000;26001;26002;26003;26004;26005;26006;26007;26008;26009;26010;26011;26012;26013;26014;26015	25985			31	
ALELFLESLLK	1	Unmodified	1274.7486	0.74858991	2582	Q14919	DRAP1	Dr1-associated corepressor	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	1	2	100.77	97.608	2	2.674E-13	90164	160511_QHF_FH_JSI11i_2	150.85	98.858			1.107	1.1828	18.504	6	0	Median	1.2009	1.0339	21.212	2	0	Median	0.76643	0.94362	NaN	1	0	Median	1.4645	1.4812	NaN	1	0	Median	1.107	1.183	2.2007	2	0	Median	543140000	255640000	287500000	104490000	49992000	54500000	71931000	42796000	29135000	174780000	71417000	103360000	191940000	91433000	100500000	3105	2582	2924	19100;19101;19102;19103;19104;19105	26016;26017;26018;26019;26020;26021	26019			6	
ALELHPFSMK	1	Unmodified	1171.606	0.6059652	2254	Q07617	SPAG1	Sperm-associated antigen 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	57.643	57.047	3	0.00011846	49009	160511_QHF_FH_JSI12i_3	61.344	52.155			0.78311	0.79039	23.259	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98787	1.1499	NaN	1	0	Median	0.79668	0.75103	NaN	1	0	Median	0.78311	0.79039	NaN	1	0	Median	97186000	55353000	41834000	0	0	0	14762000	5954300	8807600	27285000	15209000	12076000	55140000	34190000	20950000	3106	2254	2925	19106;19107;19108	26022	26022			1	
ALELLRK	1	Unmodified	841.53854	0.53853756	26	A6NGH7	CCDC160	Coiled-coil domain-containing protein 160	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							4	3	2	1	29.261	28.338	2;3	0.0011722	23207	160511_QHF_FH_JSI9i_3	100.74	0			0.75867	0.85883	78.552	9	9	Median	1.0838	0.87139	74.521	4	4	Median	1.5024	1.7175	98.013	2	2	Median	0.80255	0.77068	103.51	2	2	Median	0.47298	0.49019	NaN	1	1	Median	1162100000	551300000	610790000	605840000	267970000	337870000	186650000	93397000	93249000	345160000	172930000	172220000	24440000	16993000	7446400	3107	26	2926	19109;19110;19111;19112;19113;19114;19115;19116;19117;19118	26023;26024;26025;26026;26027;26028;26029;26030;26031;26032	26029			10	
ALELMGQLQDQQALR	0	Unmodified	1712.888	0.88795372	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			68.694	67.866	2	0.00062613	63897	160511_QHF_FH_JSI9i_2	105.17	84.132			0.72803	0.7383	37.063	2	1	Median	0.67375	0.56809	NaN	1	1	Median	0.78668	0.95951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131510000	76840000	54666000	7687500	3757400	3930000	123820000	73082000	50736000	0	0	0	0	0	0	3108	481	2927	19119;19120	26033;26034;26035;26036;26037	26033			5	
ALELNMLSLK	1	Unmodified	1130.6369	0.63693097	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	3	3	1	82.799	82.125	2	2.02E-11	70932	160511_QHF_FH_JSI12i_2	152.28	94.996			0.96916	1.0898	14.569	9	4	Plateau	1.0223	0.86966	28.811	2	2	Median	0.93388	1.142	13.91	3	2	Plateau	1.0633	1.0684	6.6781	3	0	Plateau	0.96916	1.0829	NaN	1	0	Median	1198300000	591780000	606570000	218440000	102300000	116140000	276890000	145120000	131770000	423890000	210800000	213100000	279130000	133560000	145560000	3109	5697	2928	19121;19122;19123;19124;19125;19126;19127;19128;19129	26038;26039;26040;26041;26042;26043;26044;26045;26046;26047;26048;26049	26040			12	
ALELNMLSLK	1	Oxidation (M)	1146.6318	0.63184559	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By matching	14.8	0.433							1	3			1	2	1	76.086	65.483	2	0.011543	34808	160513_QHF_FH_JSI10Kac_4	49.813	20.004			0.90729	0.97533	20.362	4	1	Median	NaN	NaN	NaN	0	0	Median	0.80121	0.93773	NaN	1	0	Median	1.1915	1.1759	20.892	2	1	Median	0.7961	0.84994	NaN	1	0	Median	11013000	5719400	5293700	0	0	0	2780200	1568100	1212100	5901800	2888500	3013300	2331200	1262900	1068300	3110	5697	2928	19130;19131;19132;19133	26050;26051	26050		2734	2	
ALELNPK	1	Unmodified	783.44905	0.44905385	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.25	0.433	3	1								1	1	1	1	25.203	24.7	2	0.025021	21646	160511_QHF_FH_JSI10i_1	54.787	0			1.0982	1.0082	9.2644	4	0	Median	1.1149	0.94343	NaN	1	0	Median	0.80703	0.939	NaN	1	0	Median	1.11	1.0773	NaN	1	0	Median	1.0865	1.1263	NaN	1	0	Median	311540000	140300000	171230000	50673000	17624000	33049000	104870000	54325000	50546000	81453000	35281000	46171000	74539000	33075000	41464000	3111	3195	2929	19134;19135;19136;19137	26052;26053	26053			2	
ALELNQR	0	Unmodified	842.46102	0.46101552	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	19.681	18.594	2	0.062066	15277	160511_QHF_FH_JSI12i_2	40.573	13.777			1.116	1.2168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.116	1.2168	NaN	1	0	Median	38326000	17582000	20744000	0	0	0	0	0	0	0	0	0	38326000	17582000	20744000	3112	3117	2930	19138	26054	26054			1	
ALELQPGYIR	0	Unmodified	1158.6397	0.63970816	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.304	55.369	2	0.00168	47881	160511_QHF_FH_JSI11i_2	64.42	15.723			0.81006	0.86269	13.575	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93463	0.94961	NaN	1	0	Median	0.70209	0.78373	NaN	1	0	Median	258300000	136300000	122000000	0	0	0	0	0	0	134800000	61894000	72909000	123500000	74403000	49095000	3113	1708	2931	19139;19140	26055;26056	26056			2	
ALELSGTAVPPDLEK	1	Unmodified	1538.8192	0.81918867	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	68.773	68.298	2	2.0307E-21	61786	160511_QHF_FH_JSI11i_1	140.16	94.19			1.5962	1.734	40.819	4	4	Median	NaN	NaN	NaN	0	0	Median	1.6346	1.9971	NaN	1	1	Median	1.5586	1.5056	NaN	1	1	Median	1.7874	1.8505	67.509	2	2	Median	192790000	66489000	126310000	0	0	0	66003000	16852000	49151000	25974000	9069700	16904000	100820000	40567000	60251000	3114	3216	2932	19141;19142;19143;19144;19145;19146;19147	26057;26058;26059;26060;26061;26062;26063	26058			7	
ALELTGLK	1	Unmodified	843.50657	0.50656873	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.02	5	8	4				3	4	1	5	6	7	7	52.98	48.997	1;2	1.9354E-10	27559	160513_QHF_FH_JSI12Kac_4	147.52	42.128			0.96222	1.0326	15.807	25	4	Median	1.3017	1.1036	26.749	5	2	Median	0.83464	0.98871	11.99	6	0	Median	1.0417	1.033	8.798	7	1	Median	0.94134	1.0017	6.397	7	1	Median	14158000000	6745500000	7412400000	2544600000	1057500000	1487100000	3310100000	1671700000	1638300000	4794800000	2112900000	2681900000	3508400000	1903400000	1605000000	3115	1154	2933	19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172	26064;26065;26066;26067;26068;26069;26070;26071;26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082;26083;26084;26085;26086;26087;26088;26089;26090;26091;26092;26093;26094;26095;26096;26097;26098;26099;26100;26101;26102;26103;26104;26105;26106;26107;26108;26109;26110	26104			47	
ALENDPDCR	0	Unmodified	1088.4557	0.45567214	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	1	2	11.21	8.7516	2	1.0926E-09	7783	160511_QHF_FH_JSI10i_1	171.99	163.52			1.5883	1.7634	17.13	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.5883	1.8317	NaN	1	1	Median	1.7263	1.677	NaN	1	1	Median	1.2115	1.3158	NaN	1	0	Median	610790000	206950000	403830000	0	0	0	314920000	108760000	206160000	292470000	96482000	195990000	3401000	1712700	1688300	3116	1039	2934	19173;19174;19175;19176	26111;26112;26113;26114	26113			4	
ALENTAVK	1	Unmodified	844.46543	0.46543219	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.563	12.145	2	0.0034061	9508	160511_QHF_FH_JSI9i_1	72.789	24.034			0.94375	1.0007	20.24	4	1	Median	1.3731	1.1271	NaN	1	0	Median	0.76398	0.88847	NaN	1	0	Median	1.1658	1.1459	NaN	1	1	Median	0.71552	0.75161	NaN	1	0	Median	433730000	224780000	208950000	107580000	43135000	64446000	97853000	56347000	41506000	118810000	57977000	60835000	109490000	67324000	42163000	3117	1316	2935	19177;19178;19179;19180	26115;26116;26117;26118	26118			4	
ALENVLSGKA	1	Unmodified	1000.5553	0.55530983	356	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		3								1		2		42.454	41.979	2	0.00031441	36103	160511_QHF_FH_JSI11i_2	94.692	37.962			2.253	2.2765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.253	2.2765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	300740000	80040000	220700000	0	0	0	0	0	0	300740000	80040000	220700000	0	0	0	3118	356	2936	19181;19182;19183	26119;26120;26121	26120			3	
ALEPLEGLETMR	0	Unmodified	1357.6912	0.69115139	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		74.908	74.157	2	1.9513E-05	65008	160511_QHF_FH_JSI11i_2	90.827	56.574			0.89298	1.0694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89298	1.0694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64674000	30949000	33725000	0	0	0	64674000	30949000	33725000	0	0	0	0	0	0	3119	1320	2937	19184;19185	26122;26123	26122			2	
ALEPTGQSGEAVK	1	Unmodified	1285.6514	0.65139506	3804	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.361	20.84	2	8.3548E-07	17952	160511_QHF_FH_JSI10i_1	129.89	95.081			0.77313	0.80029	4.6621	4	0	Median	0.97183	0.79501	NaN	1	0	Median	0.68576	0.80562	NaN	1	0	Median	0.8551	0.83632	NaN	1	0	Median	0.69902	0.7476	NaN	1	0	Median	360660000	204520000	156140000	72875000	36370000	36505000	90359000	58391000	31968000	90734000	50582000	40153000	106690000	59174000	47520000	3120	3804	2938	19186;19187;19188;19189	26124;26125;26126;26127;26128;26129;26130;26131	26129			8	
ALEQFATVVEAK	1	Unmodified	1304.6976	0.69761697	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.32	5	7	1			3	3	4	1	6	5	7	6	69.027	63.348	2	5.4076E-32	31200	160513_QHF_FH_JSI12Kac_5	188.61	104.14			0.94327	0.99657	25.057	19	9	Median	1.4222	1.1904	21.165	3	2	Plateau	0.71699	0.85762	23.676	5	1	Median	1.1547	1.1592	34.766	6	4	Median	0.88294	0.95797	14.071	5	2	Median	2658900000	1327800000	1331100000	349540000	155630000	193900000	677010000	357630000	319380000	942800000	424370000	518430000	689520000	390160000	299370000	3121	1675	2939	19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213	26132;26133;26134;26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147;26148;26149;26150;26151;26152;26153;26154;26155;26156;26157;26158;26159;26160	26157			29	
ALEQIDENLIYWPR	0	Unmodified	1758.8941	0.89408495	4531	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	93.457	92.699	2	5.1678E-05	81507	160511_QHF_FH_JSI9i_2	76.143	51.289			1.151	1.3016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.151	1.3016	NaN	1	1	Median	9496700	3023800	6472900	0	0	0	0	0	0	0	0	0	9496700	3023800	6472900	3122	4531	2940	19214;19215	26161;26162	26162			2	
ALEQKPDDAQYYCQR	1	Unmodified	1883.8472	0.84721111	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4									2	1	2	27.895	27.058	3	0.002288	22633	160511_QHF_FH_JSI12i_2	60.55	55.548			1.2722	1.4778	49.901	4	2	Median	NaN	NaN	NaN	0	0	Median	1.3588	1.6875	NaN	1	0	Median	0.72588	0.73324	NaN	1	0	Median	1.6327	1.7601	43.483	2	2	Median	195550000	96942000	98611000	0	0	0	52915000	31496000	21419000	69964000	41366000	28598000	72674000	24080000	48594000	3123	5548	2941	19216;19217;19218;19219;19220	26163;26164;26165;26166	26164			2	
ALEQLNGFELAGR	0	Unmodified	1416.7361	0.73612775	2538	Q14498	RBM39	RNA-binding protein 39	no	no	0	0	0	0				By MS/MS	2	0		1											1	10.806	10.115	3	0.031802	7632	160511_QHF_FH_JSI12i_2	19.74	10.308			0.56961	0.62784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56961	0.62784	NaN	1	0	Median	59042000	30947000	28095000	0	0	0	0	0	0	0	0	0	59042000	30947000	28095000	3124	2538	2942	19221	26167	26167			1	
ALEQLNGFELAGRPMK	1	Oxidation (M)	1788.9193	0.91925384	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	60.454	59.857	3	0.0015904	53086	160511_QHF_FH_JSI11i_3	56.339	36.667			0.79574	0.92437	17.683	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79574	0.92437	NaN	1	0	Median	1.013	0.94125	NaN	1	0	Median	0.6725	0.68697	NaN	1	0	Median	232580000	124680000	107900000	0	0	0	65062000	36686000	28376000	98717000	42841000	55875000	68804000	45156000	23648000	3125	2538	2943	19222;19223;19224	26168;26169;26170;26171;26172	26168		2004	5	
ALEQLNGFELAGRPMK	1	Unmodified	1772.9243	0.92433922	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	4	1	66.946	66.436	2;3	3.9989E-22	57438	160511_QHF_FH_JSI12i_3	142.91	126.42			1.1313	1.0856	22.107	8	3	Median	1.0715	0.91415	NaN	1	0	Median	0.98374	1.1697	21.967	2	1	Median	1.237	1.2331	26.048	4	2	Median	0.85485	0.87731	NaN	1	0	Median	1649900000	924400000	725500000	149530000	72628000	76905000	309260000	155090000	154170000	802120000	442080000	360040000	388990000	254600000	134390000	3126	2538	2943	19225;19226;19227;19228;19229;19230;19231;19232	26173;26174;26175;26176;26177;26178;26179;26180;26181;26182	26182			10	
ALEQQVEEMK	1	Unmodified	1203.5805	0.58053831	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	34.259	33.655	2	4.4194E-11	30038	160511_QHF_FH_JSI11i_1	148.56	107.57			0.88908	0.911	88.214	4	0	Median	3.3761	2.7738	NaN	1	0	Median	0.38381	0.44579	NaN	1	0	Median	0.52371	0.52118	NaN	1	0	Median	1.5093	1.5924	NaN	1	0	Median	612700000	342800000	269900000	170080000	52436000	117640000	168580000	134600000	33973000	130630000	82011000	48615000	143420000	73751000	69665000	3127	1436	2944	19233;19234;19235;19236;19237	26183;26184;26185;26186;26187;26188;26189	26183			7	
ALERPYTSK	1	Unmodified	1063.5662	0.56620887	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	2	1	1	12.753	12.216	2;3	0.00092025	9685	160511_QHF_FH_JSI11i_3	90.709	46.94			1.0973	18115	144.47	6	0	Linear	1.349	1.0859	3.326	2	0	Median	4.593	5.3082	247.6	2	0	Median	0.91109	0.84443	NaN	1	0	Median	0.69879	0.68421	NaN	1	0	Median	1698700000	746550000	952100000	1003400000	469950000	533460000	419270000	121820000	297450000	148620000	88561000	60062000	127350000	66211000	61135000	3128	4943	2945	19238;19239;19240;19241;19242;19243	26190;26191;26192;26193	26190			4	
ALESDMAPVLIMATNR	0	Unmodified	1730.8695	0.86952646	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	2.78	5	8	8					1		4	5	7	6	88.77	87.809	2;3	1.0812E-80	77878	160511_QHF_FH_JSI11i_2	295.32	255.47			0.99415	1.085	12.018	20	3	Median	1.285	1.0943	0.25848	3	0	Median	0.89453	1.1103	13.26	5	0	Median	1.0458	1.0225	13.805	7	2	Median	0.94035	1.0522	12.925	5	1	Median	1904500000	963210000	941280000	331760000	138600000	193160000	501420000	298140000	203280000	699970000	342710000	357270000	371340000	183770000	187570000	3129	5487	2946	19244;19245;19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265	26194;26195;26196;26197;26198;26199;26200;26201;26202;26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232	26223			39	
ALESGDVNTVWK	1	Unmodified	1317.6565	0.65648044	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	4	2	3	53.355	49.77	2	2.4988E-08	43751	160511_QHF_FH_JSI9i_2	140.3	127.77			0.95777	0.99987	19.707	11	8	Median	0.95307	0.81077	14.88	2	1	Median	0.86889	1.045	18.372	4	3	Median	1.2551	1.2257	28.797	2	2	Median	0.93598	1.0166	7.1808	3	2	Median	3614700000	1917300000	1697400000	683070000	350680000	332390000	1080900000	604950000	475910000	825060000	406920000	418140000	1025700000	554730000	470980000	3130	1600	2947	19266;19267;19268;19269;19270;19271;19272;19273;19274;19275;19276	26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246	26243			14	
ALESPERPFLAILGGAK	1	Unmodified	1767.9883	0.98831969	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.95	2	4	11						6	5	8	7	3	86.677	84.532	2;3	4.4806E-66	72866	160511_QHF_FH_JSI10i_3	239.19	214.81			0.8972	0.93498	13.952	22	7	Median	1.1497	0.99543	11.922	5	2	Median	0.80144	0.94025	6.5901	7	2	Median	0.96392	0.92975	21.256	7	3	Median	0.87789	0.89135	14.009	3	0	Median	45015000000	22593000000	22422000000	9510500000	4265800000	5244700000	6147400000	3443700000	2703700000	28028000000	14125000000	13903000000	1329800000	759070000	570740000	3131	775	2948	19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299	26247;26248;26249;26250;26251;26252;26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270;26271;26272;26273;26274;26275;26276;26277;26278;26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289;26290;26291;26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302	26260			56	
ALESSIAPIVIFASNR	0	Unmodified	1686.9305	0.93047046	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.9	3	8	8						6	5	8	7	5	95.38	93.171	2;3	1.5098E-97	86760	160511_QHF_FH_JSI11i_3	256.52	225.91			0.76572	0.81279	27.453	23	3	Median	0.7191	1.0104	28.919	5	0	Linear	0.80101	0.94059	33.036	6	2	Median	0.71724	0.70971	24.356	7	1	Median	0.71025	0.81279	24.325	5	0	Median	2949900000	1624500000	1325300000	412340000	213560000	198780000	637190000	336670000	300510000	1248400000	727660000	520760000	651920000	346650000	305270000	3132	5496	2949	19300;19301;19302;19303;19304;19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315;19316;19317;19318;19319;19320;19321;19322;19323;19324	26303;26304;26305;26306;26307;26308;26309;26310;26311;26312;26313;26314;26315;26316;26317;26318;26319;26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331;26332;26333;26334;26335	26306			32	
ALETDSVSGVSK	1	Unmodified	1191.5983	0.59829686	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	27.644	27.088	2	0.00017407	24211	160511_QHF_FH_JSI12i_1	98.257	73.334			0.78439	0.82704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78439	0.82704	NaN	1	1	Median	50322000	28081000	22241000	0	0	0	0	0	0	0	0	0	50322000	28081000	22241000	3133	2606	2950	19325;19326	26336;26337	26337			2	
ALETIGANLQK	1	Unmodified	1156.6452	0.64518747	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.193	43.807	2	0.00041357	37392	160511_QHF_FH_JSI12i_2	87.639	51.083			0.53811	0.57964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53811	0.57964	NaN	1	1	Median	17588000	11656000	5931600	0	0	0	0	0	0	0	0	0	17588000	11656000	5931600	3134	3497	2951	19327	26338	26338			1	
ALETLTGALFQRPPLIAAVK	1	Unmodified	2108.2358	0.2357606	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.01	100.88	3	3.8035E-15	81766	160511_QHF_FH_JSI9i_3	154.49	138			0.91718	1.2445	25.953	3	0	Plateau	0.91718	0.74539	NaN	1	0	Median	0.84995	1.0338	NaN	1	0	Median	1.3249	1.2445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	301160000	143490000	157680000	77612000	39761000	37851000	81038000	49069000	31969000	142510000	54655000	87856000	0	0	0	3135	453	2952	19328;19329;19330	26339;26340;26341;26342;26343	26343			5	
ALETNTHVK	1	Unmodified	1011.5349	0.53490874	5130	Q9NYL9;Q9NZR1	TMOD3;TMOD2	Tropomodulin-3;Tropomodulin-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	3	3	2	9.8184	9.3742	2;3	2.4861E-05	7001	160511_QHF_FH_JSI12i_2	88.392	61.95			0.87962	0.82189	57.645	7	1	Median	2.1271	1.9164	NaN	1	0	Median	0.57917	0.68054	95.171	2	1	Median	1.2011	1.1508	50.365	2	0	Median	0.71981	0.81449	1.2782	2	0	Median	767230000	384580000	382650000	47897000	14299000	33598000	289120000	153550000	135580000	224670000	108260000	116410000	205540000	108470000	97073000	3136	5130	2953	19331;19332;19333;19334;19335;19336;19337;19338;19339;19340	26344;26345;26346;26347;26348;26349;26350;26351	26346			8	
ALEVAEYLTPVLK	1	Unmodified	1444.8177	0.81773211	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	95.804	95.447	2;3	1.2259E-15	82209	160511_QHF_FH_JSI12i_2	165.11	127.77			0.86151	0.91146	56.595	7	5	Median	1.0271	0.89953	NaN	1	0	Median	0.85901	1.0543	NaN	1	1	Median	1.0269	1.0502	46.956	3	3	Plateau	0.44879	0.48774	98.32	2	1	Median	327840000	169210000	158630000	45792000	26149000	19644000	45596000	24105000	21490000	161750000	75432000	86317000	74704000	43527000	31177000	3137	4987	2954	19341;19342;19343;19344;19345;19346;19347	26352;26353;26354;26355;26356;26357;26358;26359;26360;26361	26353			10	
ALEVANR	0	Unmodified	771.4239	0.42390173	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.953	12.741	2	0.038917	9949	160511_QHF_FH_JSI11i_2	47.916	9.0972			1.1253	1.1526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1253	1.1526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75918000	40825000	35093000	0	0	0	0	0	0	75918000	40825000	35093000	0	0	0	3138	713	2955	19348	26362	26362			1	
ALEVFPEFAAAHSNLASVLQQQGK	1	Unmodified	2554.318	0.31798668	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	100.35	100.26	3;4	7.3404E-76	83001	160511_QHF_FH_JSI10i_3	230.48	185.23			0.83165	0.81645	25.964	6	0	Median	0.96759	0.79648	NaN	1	0	Median	0.84886	0.96057	13.854	2	0	Median	0.89278	0.83692	NaN	1	0	Median	0.58892	0.60275	30.474	2	0	Median	481510000	255610000	225900000	20976000	11981000	8994600	129880000	65834000	64042000	119630000	53009000	66621000	211030000	124790000	86240000	3139	274	2956	19349;19350;19351;19352;19353;19354	26363;26364;26365;26366;26367;26368;26369;26370	26366			8	
ALEVIKPAHILQEK	2	Unmodified	1587.9348	0.93482755	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	3	3	3	52.658	51.727	2;3;4	3.0634E-06	43888	160511_QHF_FH_JSI12i_3	89.403	82.744			0.76265	0.7785	22.939	7	7	Median	1.0208	0.82509	8.2189	2	2	Median	0.78663	0.90222	16.461	2	2	Median	0.69775	0.64377	12.493	2	2	Median	0.50442	0.51944	NaN	1	1	Median	1587000000	918520000	668430000	352540000	155570000	196970000	381970000	211620000	170350000	360620000	214040000	146580000	491820000	337290000	154530000	3140	2502	2957	19355;19356;19357;19358;19359;19360;19361;19362;19363;19364;19365	26371;26372;26373;26374;26375;26376;26377;26378;26379;26380;26381;26382;26383	26382			13	
ALEVSEDVK	1	Unmodified	988.50769	0.50769094	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	38.265	29.463	2	6.5005E-06	26073	160511_QHF_FH_JSI11i_1	109.71	54.038			0.8961	0.9253	9.6527	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88141	0.86426	NaN	1	0	Median	0.91103	0.99067	NaN	1	1	Median	12898000	6657100	6241100	0	0	0	0	0	0	5057100	2992800	2064300	7841100	3664200	4176900	3141	5436	2958	19366;19367;19368;19369;19370	26384;26385;26386;26387;26388;26389	26384			6	
ALEVYDLIR	0	Unmodified	1090.6023	0.60226003	4738	Q9H5X1	FAM96A	MIP18 family protein FAM96A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.883	75.639	2	0.0079395	65284	160511_QHF_FH_JSI12i_2	61.679	22.716			1.0662	1.1691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0662	1.1691	NaN	1	1	Median	62965000	35527000	27438000	0	0	0	0	0	0	0	0	0	62965000	35527000	27438000	3142	4738	2959	19371	26390	26390			1	
ALEYTIYNQELNETR	0	Unmodified	1855.8952	0.89520716	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	62.925	62.234	2	6.5047E-98	55065	160511_QHF_FH_JSI10i_2	260.33	202.98			1.1144	1.1804	18.628	8	2	Median	1.0554	0.90157	NaN	1	0	Median	0.90475	1.0736	6.0167	2	0	Median	1.2771	1.234	21.757	3	2	Median	1.142	1.2601	1.6564	2	0	Median	449840000	210630000	239210000	66323000	30853000	35470000	104210000	54332000	49876000	177580000	79178000	98403000	101720000	46263000	55461000	3143	5479	2960	19372;19373;19374;19375;19376;19377;19378;19379	26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403;26404	26404			14	
ALFAGDIEEMEER	0	Unmodified	1508.6817	0.68170891	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	69.704	69.11	2	3.1563E-06	60441	160511_QHF_FH_JSI11i_2	126.67	112.25			0.90429	0.87921	13.567	7	2	Median	0.90429	0.76959	NaN	1	0	Median	0.68291	0.82534	NaN	1	0	Median	0.89994	0.87409	6.0958	2	0	Median	1.0178	1.0295	12.969	3	2	Median	428780000	221340000	207430000	81617000	42332000	39285000	55744000	32425000	23319000	129570000	65716000	63858000	161840000	80872000	80971000	3144	4348	2961	19380;19381;19382;19383;19384;19385;19386	26405;26406;26407;26408;26409;26410;26411;26412;26413;26414	26410			10	
ALFAISCLVR	0	Unmodified	1148.6376	0.63759967	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	83.771	75.528	2	0.00012129	41483	160513_QHF_FH_JSI11Kac_6	100.02	63.622			1.1401	1.1333	23.476	4	1	Median	1.3202	1.1341	NaN	1	1	Median	0.98459	1.1325	NaN	1	0	Median	0.84091	0.81973	NaN	1	0	Median	1.3563	1.4533	NaN	1	0	Median	394500000	155680000	238810000	87270000	34967000	52302000	185330000	76512000	108820000	95431000	34007000	61424000	26468000	10195000	16273000	3145	5159	2962	19387;19388;19389;19390;19391	26415;26416;26417;26418;26419;26420;26421	26416			7	
ALFAVAR	0	Unmodified	746.44391	0.44390889	5244;3123	Q9UBP0;Q6PIW4	SPAST;FIGNL1	Spastin;Fidgetin-like protein 1	no	no	0	0	0	0		By MS/MS			3	0			1								1			48.499	46.933	2	0.023987	39211	160511_QHF_FH_JSI10i_3	49.312	8.9494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3146	5244;3123	2963	19392	26422	26422			1	
ALFAVPK	1	Unmodified	744.45341	0.45341094	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.75	3	4	4						3	3	3	4	4	50.745	48.058	2	0.005487	42209	160511_QHF_FH_JSI9i_2	94.669	67.352			0.89406	0.98418	17.524	14	0	Median	0.86584	0.73968	6.9764	3	0	Median	0.73246	0.90015	12.624	3	0	Median	1.0988	1.0728	2.9393	4	0	Median	0.91192	0.98418	15.545	4	0	Median	3358700000	1725700000	1633100000	618440000	322690000	295750000	828070000	471530000	356540000	1048300000	485500000	562840000	863890000	445940000	417940000	3147	379	2964	19393;19394;19395;19396;19397;19398;19399;19400;19401;19402;19403;19404;19405;19406	26423;26424;26425;26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441;26442;26443;26444;26445;26446;26447;26448;26449	26439			27	
ALFAVPKNYK	2	Acetyl (K)	1191.6652	0.66519463	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.5	62.081	2	5.1678E-07	33675	160513_QHF_FH_JSI11Kac_6	107.66	84.236			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7855100	7855100	0	0	0	0	0	0	0	7855100	7855100	0	0	0	0	3148	379	2965	19407	26450	26450	195		1	
ALFDFNGNDEEDLPFK	1	Unmodified	1869.8421	0.84210896	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	95.918	95.705	2	2.9454E-07	86759	160511_QHF_FH_JSI10i_1	145.83	115.9			1.2867	1.1749	17.415	6	5	Median	1.3893	1.1465	NaN	1	1	Median	0.98605	1.11	11.491	2	2	Median	1.3069	1.2884	17.66	2	1	Median	1.4925	1.6278	NaN	1	1	Median	156960000	70339000	86621000	26139000	12483000	13656000	64082000	31071000	33011000	48805000	19420000	29385000	17933000	7363800	10570000	3149	1582	2966	19408;19409;19410;19411;19412;19413	26451;26452;26453;26454;26455;26456;26457	26455			7	
ALFEEVPELLTEAEK	1	Unmodified	1716.8822	0.88218286	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	101.25	101.14	2;3	3.3267E-21	86959	160511_QHF_FH_JSI12i_2	211.46	166.3			0.97848	1.053	16.772	8	4	Median	1.3463	1.1576	4.6413	2	2	Median	0.79046	0.97228	31.183	2	0	Median	0.93514	0.94761	8.1323	2	2	Median	0.859	0.96227	19.51	2	0	Median	1581400000	796830000	784580000	249100000	97014000	152090000	391450000	197540000	193910000	655780000	336670000	319110000	285070000	165600000	119480000	3150	1381	2967	19414;19415;19416;19417;19418;19419;19420;19421	26458;26459;26460;26461;26462;26463;26464;26465;26466;26467;26468	26458			11	
ALFEEVPELLTEAEKK	2	Unmodified	1844.9771	0.97714588	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	97.248	97.1	3	9.8321E-11	83898	160511_QHF_FH_JSI12i_3	144.05	125.46			0.86436	0.86342	8.5197	7	2	Median	1.0192	0.86342	NaN	1	0	Median	0.70339	0.86687	NaN	1	0	Median	0.8933	0.82419	14.38	3	2	Median	0.82778	0.85944	1.291	2	0	Median	729690000	364760000	364930000	50967000	19442000	31525000	70773000	40489000	30285000	226270000	114920000	111350000	381680000	189910000	191770000	3151	1381	2968	19422;19423;19424;19425;19426;19427;19428	26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479	26479			11	
ALFEIALRK	1	Unmodified	1059.6441	0.64406526	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		60.195	60.195	3	0.015512	53455	160511_QHF_FH_JSI11i_3	36.424	25.26			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3152	3516	2969	19429	26480	26480			1	
ALFFGLFSR	0	Unmodified	1056.5757	0.57565135	1884	P56937	HSD17B7	3-keto-steroid reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.859	82.549	2	1.0078E-16	47883	160513_QHF_FH_JSI10Kac_6	171.38	123.47			1.1152	1.0288	28.632	4	1	Median	1.0571	0.9031	NaN	1	0	Median	1.4169	1.6883	NaN	1	1	Median	1.1766	1.128	NaN	1	0	Median	0.90297	0.93838	NaN	1	0	Median	759060000	317590000	441470000	120540000	62815000	57729000	412830000	148080000	264750000	111110000	43954000	67154000	114570000	62737000	51836000	3153	1884	2970	19430;19431;19432;19433	26481;26482;26483;26484;26485;26486	26486			6	
ALFGIFIPSQR	0	Unmodified	1247.7026	0.70264277	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	86.242	78.335	2	5.0708E-08	44585	160513_QHF_FH_JSI10Kac_6	118.18	67.299			0.80635	0.96319	18.222	3	0	Median	1.166	1.0065	NaN	1	0	Median	0.80635	0.96319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68915	0.71976	NaN	1	0	Median	239100000	135920000	103180000	48854000	22946000	25909000	155980000	93405000	62575000	0	0	0	34266000	19566000	14700000	3154	2257	2971	19434;19435;19436	26487;26488;26489	26488			3	
ALFGLYMSASHIASNPK	1	Oxidation (M)	1821.9084	0.90835481	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	1	3	71.898	63.067	2;3	1.1354E-54	34634	160513_QHF_FH_JSI10Kac_6	241.52	209.88			0.8354	0.82885	19.613	6	3	Median	0.98684	0.82852	NaN	1	0	Median	0.61629	0.73337	NaN	1	0	Median	0.85219	0.82918	NaN	1	0	Median	1.0029	1.0444	25.983	3	3	Plateau	735270000	383200000	352070000	183790000	85621000	98171000	223610000	150060000	73554000	97974000	44584000	53391000	229900000	102940000	126960000	3155	2597	2972	19437;19438;19439;19440;19441;19442;19443	26490;26491;26492;26493;26494;26495;26496;26497;26498;26499	26499		2042	10	
ALFGLYMSASHIASNPK	1	Unmodified	1805.9134	0.91344018	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	3	3	3	2	76.155	70.61	2;3	2.4889E-112	38224	160513_QHF_FH_JSI10Kac_6	283.83	252.65			1.1154	1.0308	17.065	11	1	Median	1.2925	1.1118	13.531	3	0	Median	0.68847	0.82296	14.388	3	0	Median	1.1154	1.1012	8.9833	3	0	Median	1.0818	1.1193	29.824	2	1	Median	2359300000	1295300000	1064000000	705620000	375660000	329960000	826420000	486910000	339510000	615970000	309070000	306900000	211280000	123610000	87671000	3156	2597	2972	19444;19445;19446;19447;19448;19449;19450;19451;19452;19453;19454	26500;26501;26502;26503;26504;26505;26506;26507;26508;26509;26510;26511;26512;26513;26514;26515	26515			16	
ALFHAAK	1	Unmodified	756.42826	0.42825883	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	0	By matching			By MS/MS	3	0			2							1			1	12.781	12.376	2	0.041169	9411	160511_QHF_FH_JSI12i_3	46.802	36.496			0.92407	0.8418	1.7286	2	0	Median	1.0518	0.85215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81184	0.83157	NaN	1	0	Median	129980000	64227000	65751000	63436000	26807000	36629000	0	0	0	0	0	0	66542000	37420000	29122000	3157	4311	2973	19455;19456	26516	26516			1	
ALFIVPR	0	Unmodified	814.50651	0.50650915	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	59.297	58.639	2	0.0019641	50302	160511_QHF_FH_JSI12i_3	114.67	26.041			0.96959	1.0071	17.543	6	0	Median	1.3686	1.1788	NaN	1	0	Median	0.6394	0.78741	NaN	1	0	Median	1.0542	1.0543	4.5248	2	0	Median	0.81311	0.87163	18.492	2	0	Median	292070000	147340000	144730000	11502000	5134700	6366900	20016000	11015000	9001600	105030000	47811000	57219000	155520000	83376000	72146000	3158	4829	2974	19457;19458;19459;19460;19461;19462	26517;26518;26519;26520	26520			4	
ALFKPGAWFK	2	Unmodified	1163.6492	0.64915064	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	68.877	65.658	3	0.00017424	54327	160511_QHF_FH_JSI9i_3	65.347	49.808			0.99426	0.92813	14.791	6	0	Median	1.0557	0.8742	8.6016	2	0	Median	0.86428	1.0426	16.583	2	0	Median	0.90664	0.84938	NaN	1	0	Median	1.1285	1.1363	NaN	1	0	Median	370900000	179650000	191250000	95434000	43482000	51951000	120160000	69073000	51086000	73966000	33368000	40597000	81346000	33730000	47616000	3159	2479	2975	19463;19464;19465;19466;19467;19468	26521;26522;26523;26524;26525;26526;26527;26528;26529;26530	26526			10	
ALFLIPR	0	Unmodified	828.52216	0.52215921	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	2	1	71.427	67.904	2	0.0032988	56303	160511_QHF_FH_JSI9i_3	105.42	7.7783			0.98273	0.95679	9.962	5	0	Median	1.1917	0.95679	NaN	1	0	Median	0.85855	1.0097	NaN	1	0	Median	1.0491	1.0032	13.113	2	0	Median	0.82236	0.84567	NaN	1	0	Median	435670000	201630000	234030000	125460000	50010000	75447000	49154000	26258000	22896000	128000000	62602000	65394000	133060000	62763000	70295000	3160	733;3526	2976	19469;19470;19471;19472;19473	26531;26532;26533;26534;26535;26536;26537;26538	26534			8	
ALFLLSK	1	Unmodified	790.49528	0.49527576	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	69.108	64.729	2	0.0028642	54447	160511_QHF_FH_JSI10i_3	108.24	55.555			1.0257	1.0089	29.999	7	0	Median	0.86277	0.72116	20.073	2	0	Median	0.56139	0.64284	NaN	1	0	Median	1.2796	1.2357	15.174	2	0	Median	1.026	1.0742	8.8728	2	0	Median	294860000	139850000	155010000	74500000	38272000	36228000	49280000	27427000	21853000	81521000	27821000	53700000	89559000	46330000	43229000	3161	5752	2977	19474;19475;19476;19477;19478;19479;19480	26539;26540;26541;26542	26540			4	
ALFLYSR	0	Unmodified	868.48069	0.48068833	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	58.875	51.133	2	3.3798E-11	27816	160513_QHF_FH_JSI11Kac_6	149.06	74.228			1.1089	0.98796	11.423	5	2	Median	1.148	0.96869	0.25129	2	2	Median	0.8231	0.98796	NaN	1	0	Median	1.3016	1.2681	NaN	1	0	Median	0.98414	1.0553	NaN	1	0	Median	456310000	218540000	237770000	164290000	76979000	87306000	153140000	83216000	69920000	96189000	39724000	56465000	42700000	18618000	24082000	3162	859	2978	19481;19482;19483;19484;19485	26543;26544;26545;26546;26547;26548;26549	26544			7	
ALFLYTSHLR	0	Unmodified	1219.6713	0.67134264	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	3	1	64.804	55.518	2;3	3.6692E-08	29083	160513_QHF_FH_JSI12Kac_6	114.4	76.38			0.95237	1.026	24.349	5	2	Median	0.82823	0.724	NaN	1	0	Median	0.7963	0.91478	NaN	1	0	Median	1.3407	1.2706	10.587	2	1	Median	0.95237	1.026	NaN	1	1	Median	243540000	130800000	112740000	36647000	22131000	14516000	110870000	64108000	46764000	73005000	33441000	39564000	23021000	11123000	11898000	3163	728	2979	19486;19487;19488;19489;19490;19491;19492	26550;26551;26552;26553;26554;26555;26556	26554			7	
ALFLYTSHLRK	1	Unmodified	1347.7663	0.76630566	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			52.94	44.349	3;4	0.0018256	24427	160513_QHF_FH_JSI10Kac_6	49.5	36.87			0.59985	0.71247	1.9119	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59985	0.71247	1.9119	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43177000	26430000	16747000	0	0	0	43177000	26430000	16747000	0	0	0	0	0	0	3164	728	2980	19493;19494	26557;26558	26557			2	
ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRK	1	Unmodified	4168.1278	0.12781342	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.917	94.196	4	4.7128E-298	55390	160513_QHF_FH_JSI10Kac_6	332.78	312.55			1.0535	1.2588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0535	1.2588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	643090000	292860000	350230000	0	0	0	643090000	292860000	350230000	0	0	0	0	0	0	3165	3634	2981	19495	26559	26559			1	
ALFNHIDK	1	Unmodified	956.50797	0.50796571	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			5							1	2	1	1	26.01	25.217	2;3	0.00034882	21191	160511_QHF_FH_JSI10i_3	88.948	57.013			0.67124	1.3048	47.556	5	0	Linear	1.4311	1.145	NaN	1	0	Median	0.46999	0.54494	38.075	2	0	Median	0.67124	0.62738	NaN	1	0	Median	1.3351	1.3583	NaN	1	0	Median	659890000	307850000	352040000	172880000	70365000	102510000	153630000	87988000	65640000	96625000	46342000	50283000	236760000	103160000	133600000	3166	4753	2982	19496;19497;19498;19499;19500	26560;26561;26562;26563;26564	26562			4	
ALFNVTVDSWK	1	Unmodified	1278.6608	0.66083754	5040	Q9NVN3	RIC8B	Synembryn-B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.004	78.749	2	0.00032287	68384	160511_QHF_FH_JSI12i_3	75.387	56.607			0.94794	0.96776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94794	0.96776	NaN	1	0	Median	16069000	8148300	7920600	0	0	0	0	0	0	0	0	0	16069000	8148300	7920600	3167	5040	2983	19501	26565;26566	26565			2	
ALFNYVHCMFGIR	0	Unmodified	1626.7799	0.77992359	1897	P58005	SESN3	Sestrin-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.501	76.908	3	0.0044775	42584	160513_QHF_FH_JSI10Kac_6	42.789	35.412			2.267	2.6754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.267	2.6754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44875000	14971000	29904000	0	0	0	44875000	14971000	29904000	0	0	0	0	0	0	3168	1897	2984	19502	26567	26567			1	
ALFPGDSEIDQLFR	0	Unmodified	1606.7991	0.79912193	1252	P24941;Q00526	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	101.23	101.13	2	7.2268E-15	88774	160511_QHF_FH_JSI11i_2	163.34	126.23			1.0201	1.0209	9.6541	6	1	Median	1.055	0.89529	NaN	1	1	Median	0.86965	1.0628	6.3558	2	0	Median	1.0445	1.0153	1.4468	2	0	Median	1.0349	1.1888	NaN	1	0	Median	1028200000	507740000	520460000	165360000	66511000	98853000	265890000	148190000	117700000	289720000	145420000	144300000	307220000	147620000	159600000	3169	1252	2985	19503;19504;19505;19506;19507;19508	26568;26569;26570;26571;26572;26573	26571			6	
ALFSIGFPVPK	1	Unmodified	1174.675	0.67503104	3197	Q709F0	ACAD11	Acyl-CoA dehydrogenase family member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			95.688	94.803	2	0.00010892	78938	160511_QHF_FH_JSI10i_3	85.731	77.198			1.0839	1.0998	2.6492	2	0	Median	1.3028	1.1206	NaN	1	0	Median	0.90189	1.0794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14498000	6492900	8004700	6471200	2548000	3923200	8026400	3944900	4081500	0	0	0	0	0	0	3170	3197	2986	19509;19510	26574;26575;26576	26575			3	
ALFSSNLDPSLVEQVFLDK	1	Unmodified	2121.0994	0.099386279	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.16	102.17	2	5.8116E-64	88928	160511_QHF_FH_JSI12i_3	261.39	224.41			0.75627	0.76465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75627	0.76465	NaN	1	1	Median	84706000	48568000	36138000	0	0	0	0	0	0	0	0	0	84706000	48568000	36138000	3171	3812	2987	19511	26577	26577			1	
ALFYVAR	0	Acetyl (Protein N-term)	880.48069	0.48068833	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.61	4						2	1		1	2	3	1	82.131	76.569	2	0.0035855	72748	160511_QHF_FH_JSI10i_1	62.338	31.035			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3172	3566	2988	19512;19513;19514;19515;19516;19517;19518	26578;26579;26580;26581;26582;26583;26584	26581			7	
ALGAEIVR	0	Unmodified	827.4865	0.48650199	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	32.038	31.326	2	0.0049824	26520	160511_QHF_FH_JSI11i_2	67.032	22.421			0.96075	0.77694	24.464	6	1	Linear	0.88761	0.75488	NaN	1	0	Median	0.66408	0.79383	24.33	2	0	Median	0.6772	0.66961	45.171	2	0	Median	0.71012	0.79965	NaN	1	1	Median	1106900000	579360000	527530000	211400000	96912000	114490000	291560000	163590000	127970000	447640000	232470000	215170000	156280000	86383000	69900000	3173	957	2989	19519;19520;19521;19522;19523;19524	26585;26586;26587;26588;26589	26587			5	
ALGAKHCVK	2	Acetyl (K)	1024.5488	0.54878467	3	P0DPI2;A0A0B4J2D5			yes	no	1	0	0	1		By MS/MS			16	0									1		1			15.997	9.1608	3	0.045238	6287	160513_QHF_FH_JSI10Kac_6	34.206	21.59			6.8804	7.4337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.8804	7.4337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1455500	198730	1256800	0	0	0	1455500	198730	1256800	0	0	0	0	0	0	3174	3	2990	19525	26590	26590			1	
ALGAQIEK	1	Unmodified	828.47052	0.47051757	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.67	0.471	1	2								1			2	25.332	24.394	2	0.0070234	20332	160511_QHF_FH_JSI12i_2	60.788	3.5069			0.95606	1.0168	10.939	3	0	Plateau	1.0414	0.88912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97108	1.0597	5.8345	2	0	Median	1270900000	694230000	576640000	150810000	86110000	64697000	0	0	0	0	0	0	1120100000	608120000	511940000	3175	3061	2991	19526;19527;19528	26591;26592;26593	26591			3	
ALGDEDDLAK	1	Unmodified	1045.4928	0.49276916	4590	Q9C0I1	MTMR12	Myotubularin-related protein 12	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.625	27.069	2	0.016225	24195	160511_QHF_FH_JSI12i_1	50.473	34.27			1.3222	1.3229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3222	1.3229	NaN	1	1	Median	25172000	11381000	13791000	0	0	0	0	0	0	0	0	0	25172000	11381000	13791000	3176	4590	2992	19529	26594	26594			1	
ALGDHSQAFLQAIADNNIQDHNVK	1	Unmodified	2618.2837	0.28372644	719	O95714;Q9BVR0	HERC2;HERC2P3	E3 ubiquitin-protein ligase HERC2;Putative HERC2-like protein 3	yes	no	0	0	0	0		By MS/MS			3	0			1								1			73.142	71.693	4	0.027156	60080	160511_QHF_FH_JSI10i_3	24.975	22.252			0.6342	0.74647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6342	0.74647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17372000	12764000	4608500	0	0	0	17372000	12764000	4608500	0	0	0	0	0	0	3177	719	2993	19530	26595	26595			1	
ALGDLISATK	1	Unmodified	987.56006	0.56006086	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.58	4	3	4				1	1		2	3	5	3	56.148	53.74	2	4.4544E-06	47615	160511_QHF_FH_JSI11i_3	136.57	101.27			0.9658	1.0086	13.353	12	2	Median	1.1183	0.93699	21.572	2	0	Median	0.74983	0.94301	8.7232	3	0	Plateau	1.0544	1.0069	13.786	5	1	Median	1.046	1.0838	18.634	2	1	Median	1649000000	821000000	828010000	190960000	90986000	99975000	401690000	217250000	184440000	600290000	294980000	305300000	456080000	217780000	238300000	3178	5616	2994	19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541;19542;19543	26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608;26609;26610;26611	26596			16	
ALGDQILFVNRPDK	1	Unmodified	1584.8624	0.86239089	1315	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							2		1		63.459	62.458	2;3	0.015814	55571	160511_QHF_FH_JSI11i_3	45.14	39.108			0.82016	0.74368	9.3608	3	3	Median	0.85285	0.69438	9.6999	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82016	0.77538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	429220000	267690000	161530000	218300000	139830000	78467000	0	0	0	210920000	127850000	83067000	0	0	0	3179	1315	2995	19544;19545;19546	26612;26613;26614	26612			3	
ALGDSSPSQAMQEYIAVVK	1	Unmodified	1992.9826	0.98264196	4365	Q9BR61	ACBD6	Acyl-CoA-binding domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	86.362	85.584	2	4.9137E-14	75437	160511_QHF_FH_JSI9i_2	146.5	123.13			0.91791	0.88684	32.477	2	1	Median	1.286	1.1158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65516	0.70487	NaN	1	0	Median	27422000	10993000	16429000	14722000	4004100	10718000	0	0	0	0	0	0	12700000	6988700	5710900	3180	4365	2996	19547;19548;19549	26615;26616;26617	26617			2	
ALGDVTVLGSLLLQHLLHFSTPGLVLR	0	Unmodified	2868.6589	0.65893405	3314	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	101.26	93.147	3;4	6.3919E-202	52899	160513_QHF_FH_JSI11Kac_6	295.63	277.84			0.87729	0.95623	45.593	6	0	Median	0.88815	0.74947	27.041	2	0	Median	0.87729	1.0332	3.5417	2	0	Median	1.0597	1.0174	NaN	1	0	Median	0.31497	0.33093	NaN	1	0	Median	5951700000	2794500000	3157300000	1310900000	604960000	705900000	3865500000	1796300000	2069200000	546900000	270880000	276020000	228500000	122330000	106170000	3181	3314	2997	19550;19551;19552;19553;19554;19555	26618;26619;26620;26621;26622;26623;26624	26619			7	
ALGEPITLFGEGPAER	0	Unmodified	1655.8519	0.85188578	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.046	81.046	2	0.003405	72476	160511_QHF_FH_JSI11i_3	62.924	38.132			0.66277	0.62814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66277	0.62814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24585000	9406300	15179000	0	0	0	0	0	0	24585000	9406300	15179000	0	0	0	3182	308	2998	19556	26625	26625			1	
ALGEPITLFGEGPAERR	0	Unmodified	1811.953	0.95299681	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			72.003	70.534	3	0.011118	59079	160511_QHF_FH_JSI10i_3	31.42	20.566			1.1278	1.0897	15.798	2	0	Median	1.5139	1.2184	NaN	1	0	Median	0.84018	0.97448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63694000	29007000	34687000	31024000	11649000	19374000	32670000	17358000	15313000	0	0	0	0	0	0	3183	308	2999	19557;19558	26626	26626			1	
ALGEYLER	0	Unmodified	949.4869	0.48689592	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	38.983	38.369	2	0.0015903	32670	160511_QHF_FH_JSI12i_3	83.753	54.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3184	2517	3000	19559;19560	26627;26628	26628			2	
ALGFEPK	1	Unmodified	760.41194	0.41194006	1510	P41208	CETN2	Centrin-2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2	0		3								1	1	1		31.836	31.046	2	0.012569	27044	160511_QHF_FH_JSI9i_2	69.176	45.203			1.13	1.4517	23.471	3	0	Plateau	1.13	0.98205	NaN	1	0	Median	0.81208	0.98886	NaN	1	0	Median	1.466	1.4797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162560000	72052000	90510000	42453000	20246000	22207000	49063000	27864000	21199000	71047000	23943000	47104000	0	0	0	3185	1510	3001	19561;19562;19563	26629	26629			1	
ALGFLHSK	1	Unmodified	871.49159	0.49158736	4005	Q96CB8	INTS12	Integrator complex subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			31.662	30.279	3	0.0021254	24709	160511_QHF_FH_JSI9i_3	56.434	38.448			0.88486	0.84542	15.31	2	0	Median	1.1636	0.94208	NaN	1	0	Median	0.67288	0.75868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102740000	48229000	54516000	63532000	25052000	38480000	39213000	23177000	16036000	0	0	0	0	0	0	3186	4005	3002	19564;19565	26630;26631;26632	26631			2	
ALGFMYIR	0	Unmodified	969.51061	0.51060825	2987	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	2	1	75.42	66.257	2	4.7744E-16	34772	160513_QHF_FH_JSI12Kac_6	163.34	144.61			1.0087	1.0494	17.674	4	1	Median	0.97571	0.81556	NaN	1	0	Median	0.8436	1.0002	NaN	1	0	Median	1.319	1.2384	NaN	1	1	Median	1.0429	1.101	NaN	1	0	Median	867450000	410080000	457370000	1721900	1039900	682070	395720000	205310000	190410000	365240000	158820000	206430000	104770000	44922000	59846000	3187	2987	3003	19566;19567;19568;19569;19570	26633;26634;26635;26636	26636			4	
ALGFMYIR	0	Oxidation (M)	985.50552	0.50552287	2987	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	65.203	55.728	2	0.038515	30602	160513_QHF_FH_JSI10Kac_6	44.531	26.207			1.0005	0.92668	7.7632	5	0	Median	1.0661	0.89452	10.602	2	0	Median	0.77846	0.92668	NaN	1	0	Median	1.0572	1.0223	NaN	1	0	Median	0.83375	0.90209	NaN	1	0	Median	125900000	62856000	63040000	34981000	15263000	19718000	38555000	21838000	16717000	30870000	14070000	16800000	21490000	11685000	9805500	3188	2987	3003	19571;19572;19573;19574;19575	26637	26637			1	
ALGFPLERPK	1	Unmodified	1126.6499	0.64987892	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	49.911	49.03	2;3	1.4767E-08	40227	160511_QHF_FH_JSI9i_3	115.7	82.858			0.91348	0.88036	8.9448	10	2	Median	1.1585	0.92969	9.5173	3	0	Plateau	0.80254	0.91954	12.579	3	1	Plateau	0.9459	0.90287	3.0417	2	0	Median	0.84991	0.86861	11.046	2	1	Median	8895400000	4469400000	4426000000	2495700000	1163000000	1332700000	2333300000	1352000000	981300000	3182900000	1490100000	1692800000	883520000	464340000	419180000	3189	517	3004	19576;19577;19578;19579;19580;19581;19582;19583;19584;19585	26638;26639;26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659	26652			22	
ALGGAGK	1	Unmodified	572.32821	0.32821043	5839				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	1	3	14.234	13.788	2	0.038258	11037	160511_QHF_FH_JSI10i_3	48.242	48.242	+		0.84337	0.849	18.202	7	0	Median	1.273	1.0605	NaN	1	0	Median	0.83884	0.99056	23.643	2	0	Median	0.85681	0.89329	NaN	1	0	Median	0.84337	0.849	14.09	3	0	Plateau	6899400000	3669300000	3230100000	704960000	294330000	410630000	1268600000	713640000	554920000	1164300000	612650000	551610000	3761600000	2048700000	1712900000	3190	5839	3005	19586;19587;19588;19589;19590;19591;19592	26660;26661	26660			2	
ALGGEDVR	0	Unmodified	815.41373	0.41373097	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	3	2	1	14.378	11.181	2	0.0022198	7658	160513_QHF_FH_JSI11Kac_4	91.9	51.797		+	1.0256	0.89358	20.582	6	1	Linear	1.2607	1.0279	NaN	1	0	Median	0.92129	1.1001	30.428	2	1	Median	1.0431	1.0239	32.628	2	0	Median	0.9097	0.96357	NaN	1	0	Median	2711000000	1461900000	1249200000	437760000	227060000	210710000	662360000	404310000	258060000	843670000	443040000	400630000	767240000	387470000	379780000	3191	55	3006	19593;19594;19595;19596;19597;19598;19599;19600	26662;26663;26664;26665;26666;26667;26668;26669;26670;26671	26667			10	
ALGHPAMLSK	1	Unmodified	1023.5535	0.55353569	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.79	0.41		3	11							6	3	3	2	24.617	23.841	2;3	1.8314E-07	19521	160511_QHF_FH_JSI12i_3	105.1	79.162			0.89256	0.91197	82.766	14	6	Median	1.1594	0.97555	102.38	6	4	Median	3.2448	3.6894	85.589	3	0	Median	0.72382	0.68853	48.286	3	2	Median	0.89256	0.91197	5.3784	2	0	Median	2332000000	956830000	1375200000	578020000	214280000	363740000	243390000	76886000	166500000	611280000	280150000	331120000	899350000	385510000	513840000	3192	3921	3007	19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612;19613;19614	26672;26673;26674;26675;26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686	26686			14	
ALGHQLGR	0	Unmodified	850.47733	0.47733428	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			10.349	9.71	2	0.0040515	7408	160511_QHF_FH_JSI10i_3	76.847	37.628			0.90956	0.89059	3.4188	2	1	Median	1.0561	0.86932	NaN	1	0	Median	0.78335	0.91239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70034000	37518000	32515000	45306000	22428000	22879000	24727000	15091000	9636600	0	0	0	0	0	0	3193	2517	3008	19615;19616	26687;26688	26687			2	
ALGIDGLLALR	0	Unmodified	1110.6761	0.67609367	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.359	93.336	2	0.002202	81010	160511_QHF_FH_JSI12i_3	57.96	40.574			1.3315	1.4224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3315	1.4224	NaN	1	0	Median	12345000	5224800	7120000	0	0	0	0	0	0	0	0	0	12345000	5224800	7120000	3194	2397	3009	19617	26689	26689			1	
ALGIHQTGQK	1	Unmodified	1051.5774	0.57744226	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	10.57	10.257	2;3	1.5074E-09	7830	160511_QHF_FH_JSI10i_3	133.86	78.186			0.95482	0.93985	16.342	8	0	Median	1.173	0.93985	2.296	2	0	Median	0.80479	0.93644	8.0133	2	0	Median	1.1817	1.1215	13.977	2	0	Median	0.73578	0.75345	3.7316	2	0	Median	1469000000	782440000	686550000	194440000	86055000	108380000	285000000	142430000	142570000	307870000	154240000	153630000	681690000	399720000	281970000	3195	2800	3010	19618;19619;19620;19621;19622;19623;19624;19625	26690;26691;26692;26693;26694;26695;26696;26697;26698;26699;26700	26692			11	
ALGISHAK	1	Unmodified	795.46029	0.46028724	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	9.7714	9.488	2	0.010972	7032	160511_QHF_FH_JSI9i_3	54.611	30.639			0.61161	0.64169	57.854	4	2	Median	1.8573	1.5054	NaN	1	0	Median	0.50393	0.58347	NaN	1	1	Median	0.7423	0.70571	NaN	1	0	Median	0.37897	0.37645	NaN	1	1	Median	331100000	177980000	153110000	91148000	31179000	59970000	52956000	32075000	20881000	83448000	50865000	32583000	103550000	63865000	39682000	3196	3221	3011	19626;19627;19628;19629	26701;26702;26703;26704;26705	26703			5	
ALGITEIFIK	1	Unmodified	1103.659	0.65904662	4287	Q99574	SERPINI1	Neuroserpin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	88.333	87.901	2	0.0011006	76204	160511_QHF_FH_JSI12i_3	67.897	44.469			1.0598	1.0423	13.96	6	0	Median	1.1946	0.99975	NaN	1	0	Median	0.93116	1.152	NaN	1	0	Median	1.0598	1.0114	10.151	2	0	Median	1.0114	1.1046	26.272	2	0	Median	74791000	34741000	40050000	8324700	4611200	3713500	9916100	4101000	5815100	25530000	11775000	13756000	31020000	14254000	16766000	3197	4287	3012	19630;19631;19632;19633;19634;19635	26706;26707;26708;26709;26710;26711;26712;26713;26714;26715	26714			9	
ALGITLIK	1	Unmodified	827.54804	0.54803961	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							1	1		2	63.462	62.364	2	0.0046723	53648	160511_QHF_FH_JSI12i_3	67.981	21.61			1.2022	1.1945	9.4257	3	0	Median	1.5761	1.3028	NaN	1	0	Median	0.91715	1.0791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2022	1.1945	NaN	1	0	Median	244110000	115530000	128580000	45532000	19979000	25553000	44280000	22632000	21648000	0	0	0	154290000	72918000	81377000	3198	3513	3013	19636;19637;19638;19639	26716;26717;26718;26719	26719			4	
ALGLAHVAIK	1	Unmodified	991.61785	0.61785051	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	3	1	3	3	46.118	42.725	2;3	5.7467E-06	36191	160511_QHF_FH_JSI12i_3	96.331	81.657			0.89943	0.87376	14.536	10	1	Median	0.91742	0.74911	25.659	3	1	Plateau	0.81123	0.96492	NaN	1	0	Median	0.8831	0.82411	2.6785	3	0	Median	0.8559	0.88484	10.181	3	0	Median	788020000	435210000	352820000	193390000	114700000	78690000	93097000	54157000	38940000	188410000	96058000	92348000	313130000	170290000	142840000	3199	3103	3014	19640;19641;19642;19643;19644;19645;19646;19647;19648;19649	26720;26721;26722;26723;26724;26725;26726	26726			5	
ALGLDTGQQQDAQEFSK	1	Unmodified	1834.8697	0.86972069	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			50.765	49.952	2	2.4997E-10	44984	160511_QHF_FH_JSI10i_1	162.48	139.6			1.3849	1.33	9.9308	2	1	Median	1.7333	1.4268	NaN	1	0	Median	1.1065	1.2398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79748000	36634000	43113000	46846000	18080000	28765000	32902000	18554000	14348000	0	0	0	0	0	0	3200	3331	3015	19650;19651	26727;26728	26727			2	
ALGLGVEQLPVVFEDVVLHQATILPK	1	Unmodified	2784.579	0.57895239	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.06		9	7						6	5	5	5	7	102.09	99.65	3;4	3.197E-223	51503	160513_QHF_FH_JSI11Kac_6	306.03	272.61			0.86176	0.95576	18.58	22	3	Median	1.2337	1.0165	8.8631	5	1	Median	0.78585	0.94001	31.345	5	0	Median	0.85666	0.8695	16.08	5	0	Median	0.91377	0.96382	6.3425	7	2	Median	13829000000	7209800000	6619000000	2007900000	905770000	1102200000	2655500000	1442800000	1212700000	3708900000	1983100000	1725700000	5456500000	2878200000	2578300000	3201	1650	3016	19652;19653;19654;19655;19656;19657;19658;19659;19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671;19672;19673	26729;26730;26731;26732;26733;26734;26735;26736;26737;26738;26739;26740;26741;26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762;26763;26764;26765	26739			37	
ALGLHGKK	2	Unmodified	822.50757	0.50757178	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			5							2	2		1	6.5731	6.1747	2;3	0.0090131	4210	160511_QHF_FH_JSI10i_3	35.295	19.856			1.2253	1.1049	23.117	5	1	Median	1.479	1.2027	24.781	2	0	Median	0.85572	0.96933	18.51	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4225	1.4561	NaN	1	0	Median	309190000	135840000	173340000	131580000	46612000	84968000	136250000	69403000	66846000	0	0	0	41361000	19830000	21531000	3202	1304	3017	19674;19675;19676;19677;19678	26766;26767;26768;26769;26770	26766			5	
ALGLQFHSR	0	Unmodified	1027.5563	0.55631289	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			42.063	33.199	3	0.00084954	18462	160513_QHF_FH_JSI10Kac_6	58.699	43.548			1.0606	1.0726	0.092669	2	0	Median	1.2522	1.0719	NaN	1	0	Median	0.89829	1.0733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31095000	13925000	17169000	11445000	4193300	7252100	19649000	9732100	9917100	0	0	0	0	0	0	3203	346	3018	19679;19680	26771	26771			1	
ALGLVIR	0	Unmodified	740.49086	0.49085908	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	53.317	48.723	2	0.00082634	26548	160513_QHF_FH_JSI11Kac_6	113.07	23.615			0.88873	0.99701	25.63	7	1	Median	1.1139	0.93117	48.032	2	0	Median	0.88792	1.0025	NaN	1	0	Median	0.94187	0.91874	11.561	2	1	Median	0.78376	0.8129	33.849	2	0	Median	699290000	386180000	313110000	214980000	105680000	109300000	143660000	81172000	62493000	162360000	98176000	64188000	178280000	101150000	77125000	3204	3860	3019	19681;19682;19683;19684;19685;19686;19687	26772;26773;26774;26775;26776;26777;26778;26779;26780	26775			9	
ALGLVTPAGVLLAGPPGCGK	1	Unmodified	1847.0339	0.033889671	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	97.556	97.481	2;3	8.8852E-08	84222	160511_QHF_FH_JSI12i_3	96.64	59.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3205	285	3020	19688;19689;19690	26781;26782;26783	26782			3	
ALGMDTVHIHR	0	Unmodified	1248.6397	0.63972494	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				34.028	32.598	3	0.00077858	26571	160511_QHF_FH_JSI9i_3	55.98	51.085			1.6686	1.3893	NaN	1	0	Median	1.6686	1.3893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19502000	8061300	11441000	19502000	8061300	11441000	0	0	0	0	0	0	0	0	0	3206	211	3021	19691	26784	26784			1	
ALGNIQIAHNLYWLLK	1	Unmodified	1866.0516	0.051588646	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			89.827	83.109	2;3	1.6287E-33	45540	160513_QHF_FH_JSI9Kac_6	172.1	147.56			0.88721	1.0068	42.782	3	1	Plateau	1.1939	1.0099	NaN	1	0	Median	1.2349	1.4594	52.505	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	539320000	259630000	279690000	142320000	57142000	85183000	397000000	202490000	194510000	0	0	0	0	0	0	3207	135	3022	19692;19693;19694	26785;26786;26787;26788;26789	26786			5	
ALGNNFYEYYVDDPPR	0	Unmodified	1931.869	0.86899241	1337	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	2	3	73.836	73.224	2	2.19E-116	64301	160511_QHF_FH_JSI11i_2	271.6	248.72			0.8086	0.88	32.664	6	1	Linear	1.2627	1.067	NaN	1	0	Median	1.0515	1.2718	31.435	2	0	Median	1.376	1.3426	61.136	2	1	Median	0.93479	1.0549	NaN	1	0	Median	357880000	159730000	198160000	53918000	18722000	35196000	124260000	61759000	62498000	115110000	48172000	66938000	64599000	31073000	33526000	3208	1337	3023	19695;19696;19697;19698;19699;19700;19701;19702	26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800	26796			11	
ALGNSEEATMLQHR	0	Unmodified	1555.7413	0.74128948	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			33.663	32.712	3	0.00029355	28721	160511_QHF_FH_JSI10i_2	52.823	41.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3209	1599	3024	19703	26801	26801			1	
ALGPEQLLR	0	Unmodified	995.57638	0.57637963	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.964	54.597	2	0.041247	46687	160511_QHF_FH_JSI12i_2	37.727	10.765			1.5076	1.6721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5076	1.6721	NaN	1	0	Median	175850000	62114000	113740000	0	0	0	0	0	0	0	0	0	175850000	62114000	113740000	3210	1463	3025	19704	26802	26802			1	
ALGPSLPNSQPPPEVYVSLIK	1	Unmodified	2205.2045	0.20452005	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.314	96.33	3	0.0017576	87366	160511_QHF_FH_JSI10i_1	45.696	30.104			2.633	2.9778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.633	2.9778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17866000	5607300	12259000	0	0	0	17866000	5607300	12259000	0	0	0	0	0	0	3211	2693	3026	19705	26803	26803			1	
ALGQAASDNSGPEDAK	1	Unmodified	1529.6958	0.69577907	2638	Q15155	NOMO1	Nodal modulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.837	16.365	2	6.1314E-31	13735	160511_QHF_FH_JSI10i_1	196.5	160.16			1.1059	1.0979	33.953	4	0	Median	0.93462	0.76905	NaN	1	0	Median	1.4458	1.7061	NaN	1	0	Median	1.2773	1.232	NaN	1	0	Median	0.95749	0.9784	NaN	1	0	Median	281380000	139660000	141720000	62447000	39560000	22887000	73392000	30226000	43167000	79772000	36341000	43431000	65769000	33535000	32234000	3212	2638	3027	19706;19707;19708;19709	26804;26805;26806;26807;26808;26809;26810	26808			7	
ALGQLISK	1	Unmodified	828.5069	0.50690308	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	38.541	37.908	2	0.0019323	32125	160511_QHF_FH_JSI12i_3	94.806	53.154			1.3732	1.2215	48.233	5	3	Median	1.4871	1.2215	NaN	1	0	Median	1.0488	1.1914	NaN	1	0	Median	1.2163	1.1598	95.25	2	2	Median	1.3732	1.3932	NaN	1	1	Median	957750000	429030000	528720000	88519000	32828000	55691000	128780000	74868000	53911000	374580000	150520000	224060000	365880000	170810000	195060000	3213	3943	3028	19710;19711;19712;19713;19714	26811;26812;26813;26814;26815;26816;26817	26817			7	
ALGQNPTNAEVLK	1	Unmodified	1353.7252	0.72522871	1915	P60660	MYL6	Myosin light polypeptide 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.86	5	4	4			3	3	2		6	5	5	5	42.935	38.638	2	1.5955E-53	35382	160511_QHF_FH_JSI12i_1	204.69	157.49			0.90617	0.96307	34.795	21	4	Median	1.0335	0.83572	57.594	6	3	Median	0.81975	0.98473	5.1664	5	0	Median	0.97764	0.95824	11.833	5	1	Median	0.89496	0.98088	32.727	5	0	Median	13082000000	6667800000	6413800000	2873600000	1411600000	1462000000	3265000000	1881200000	1383700000	3701100000	1936200000	1764900000	3242000000	1438800000	1803200000	3214	1915	3029	19715;19716;19717;19718;19719;19720;19721;19722;19723;19724;19725;19726;19727;19728;19729;19730;19731;19732;19733;19734;19735	26818;26819;26820;26821;26822;26823;26824;26825;26826;26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840;26841;26842;26843;26844;26845;26846;26847;26848;26849;26850;26851;26852;26853;26854;26855;26856;26857;26858;26859;26860;26861;26862;26863	26830			46	
ALGSAQYEDPR	0	Unmodified	1205.5677	0.56766543	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.516	23.3	2	0.0012212	20283	160511_QHF_FH_JSI11i_1	65.224	44.895			0.87906	0.90893	7.7527	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76417	0.86044	NaN	1	1	Median	1.0112	0.96014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95122000	37718000	57405000	0	0	0	32576000	16566000	16010000	62546000	21152000	41394000	0	0	0	3215	4413	3030	19736;19737;19738	26864;26865;26866;26867	26864			4	
ALGSEVQDASK	1	Unmodified	1103.5459	0.54586736	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.466	17.972	2	1.1449E-09	15286	160511_QHF_FH_JSI10i_1	135.86	97.067			1.1283	1.1433	11.841	4	0	Median	1.6956	1.4128	NaN	1	0	Median	0.91598	1.0883	NaN	1	0	Median	1.1401	1.1131	NaN	1	0	Median	1.1166	1.1743	NaN	1	0	Median	640800000	271260000	369540000	164960000	57882000	107080000	175750000	81505000	94246000	142040000	60304000	81732000	158060000	71571000	86485000	3216	4673	3031	19739;19740;19741;19742	26868;26869;26870;26871;26872;26873;26874;26875	26872			8	
ALGSLHLPTNPTSLPAVAK	1	Unmodified	1886.0625	0.062547262	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	76.982	76.208	3	5.0372E-05	63918	160511_QHF_FH_JSI10i_3	63.691	54.285			0.99986	1.2492	20.835	4	1	Linear	1.0514	0.87824	NaN	1	0	Median	0.64913	0.74	NaN	1	0	Median	1.2818	1.2213	NaN	1	0	Median	0.95087	0.95133	NaN	1	1	Median	131280000	67013000	64266000	18975000	10540000	8435200	13960000	8948200	5011600	56122000	24296000	31826000	42222000	23229000	18993000	3217	1548	3032	19743;19744;19745;19746;19747	26876;26877;26878;26879;26880;26881	26877			6	
ALGSPTK	1	Unmodified	672.38064	0.38063993	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	8.4754	8.0976	2	0.017974	5887	160511_QHF_FH_JSI12i_2	60.648	18.174			1.0917	0.97511	9.3607	5	0	Median	1.0923	0.92898	NaN	1	0	Median	0.80475	0.97511	NaN	1	0	Median	1.0927	1.0865	1.387	2	0	Median	0.79365	0.88216	NaN	1	0	Median	1093800000	516010000	577820000	142210000	53006000	89208000	142040000	69108000	72930000	595720000	288880000	306830000	213860000	105010000	108840000	3218	4943	3033	19748;19749;19750;19751;19752	26882	26882			1	
ALGSVGPVDLLVNNAAVALLQPFLEVTK	1	Unmodified	2847.611	0.6109808	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		104.67	104.61	3	7.4468E-18	92259	160511_QHF_FH_JSI11i_2	100.93	98.42			0.94345	0.9681	14.493	3	1	Plateau	0.92136	0.77219	NaN	1	0	Median	0.90185	1.0117	NaN	1	1	Median	0.94382	0.9681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35250000	17664000	17586000	7965200	4052000	3913200	4153400	2780200	1373200	23131000	10832000	12299000	0	0	0	3219	3278	3034	19753;19754;19755	26883;26884;26885;26886;26887	26886			5	
ALGTEVIQLFPEK	1	Unmodified	1443.7973	0.79733102	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.18	5.04	4	8	2					3		5	5	4	3	87.429	85.041	2;3	9.3086E-42	76719	160511_QHF_FH_JSI11i_2	246.14	194.79			1.0448	1.0334	8.0292	17	1	Median	1.2566	1.0248	9.3519	5	1	Median	0.84874	0.99768	7.4256	5	0	Median	1.0291	1.0214	4.2622	4	0	Median	1.0571	1.1939	6.7154	3	0	Median	1602700000	811790000	790960000	293450000	139210000	154240000	414340000	225800000	188540000	502520000	246520000	256000000	392430000	200250000	192180000	3220	736	3035	19756;19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772	26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898;26899;26900;26901;26902;26903;26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915;26916;26917;26918;26919;26920;26921;26922;26923;26924;26925;26926;26927;26928;26929	26917			42	
ALGTLGMTTNEK	1	Unmodified	1234.6227	0.62273747	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	3.85		4	3				1			1	1	3	3	40.03	39.425	2	7.1176E-06	34788	160511_QHF_FH_JSI10i_2	123.79	78.112			0.82297	0.93847	23.695	7	3	Median	1.0799	0.96925	NaN	1	0	Median	0.65233	0.81528	NaN	1	1	Median	0.84474	0.81859	21.984	2	0	Median	0.82297	0.93847	33.051	3	2	Median	291560000	149650000	141910000	48037000	18693000	29344000	40498000	24493000	16005000	100170000	48427000	51743000	102860000	58036000	44819000	3221	2947	3036	19773;19774;19775;19776;19777;19778;19779;19780	26930;26931;26932;26933;26934;26935;26936;26937;26938;26939;26940	26938			11	
ALGTLVSHVTLR	0	Unmodified	1265.7456	0.74557022	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									7	3	1	2	1	64.925	55.713	2;3	1.4543E-32	29546	160513_QHF_FH_JSI9Kac_6	162.22	139.11			1.2627	1.1808	14.669	6	2	Median	1.4678	1.2492	5.4919	2	1	Median	0.96475	1.1604	NaN	1	0	Median	1.2714	1.2505	15.204	2	1	Median	0.8563	0.90859	NaN	1	0	Median	274390000	137780000	136610000	67171000	31018000	36153000	147190000	76261000	70929000	41801000	20934000	20867000	18224000	9565800	8658600	3222	3860	3037	19781;19782;19783;19784;19785;19786;19787	26941;26942;26943;26944;26945	26942			5	
ALGTPNNEVWPEVESLQDYK	1	Unmodified	2288.0961	0.096091815	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								4	3	3	2	88.037	87.576	2;3	8.6266E-43	79841	160511_QHF_FH_JSI12i_1	242.41	228.06			0.95133	0.97239	11.77	11	0	Median	1.1986	0.98929	14.699	3	0	Median	0.87861	1.0745	11.629	3	0	Median	0.97199	0.95949	7.8624	3	0	Plateau	0.94191	0.99499	3.2504	2	0	Median	1254800000	657890000	596960000	174950000	79407000	95547000	402930000	220690000	182240000	295300000	145700000	149600000	381660000	212090000	169560000	3223	850	3038	19788;19789;19790;19791;19792;19793;19794;19795;19796;19797;19798;19799	26946;26947;26948;26949;26950;26951;26952;26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971;26972;26973;26974;26975;26976;26977;26978;26979;26980	26956			34	
ALGVLAQLIWSR	0	Unmodified	1325.782	0.78195573	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	93.198	85.374	2;3	2.8741E-76	47535	160513_QHF_FH_JSI9Kac_6	243.65	205.93			0.93519	0.99038	15.287	5	0	Median	0.93519	0.78387	NaN	1	0	Median	0.78433	0.93668	20.066	2	0	Median	1.1264	1.0728	NaN	1	0	Median	0.93634	0.99038	NaN	1	0	Median	3992700000	2342300000	1650400000	959480000	477920000	481570000	2442000000	1563000000	878970000	310560000	151820000	158740000	280680000	149570000	131110000	3224	517	3039	19800;19801;19802;19803;19804	26981;26982;26983;26984;26985;26986;26987	26983			7	
ALGWAAVYLSTCK	1	Unmodified	1438.7279	0.72787125	299	O15533	TAPBP	Tapasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		81.872	73.657	2;3	4.8533E-07	40240	160513_QHF_FH_JSI11Kac_6	140.3	102.21			0.77561	0.82104	76.448	4	3	Median	0.75221	0.6541	NaN	1	0	Median	0.75863	0.86501	NaN	1	1	Median	1.7025	1.6398	105.21	2	2	Median	NaN	NaN	NaN	0	0	Median	191340000	82689000	108660000	34944000	15020000	19924000	83771000	37365000	46406000	72630000	30304000	42326000	0	0	0	3225	299	3040	19805;19806;19807;19808	26988;26989;26990;26991	26989			3	
ALGWFALLGVR	0	Unmodified	1201.6972	0.69716346	2798	Q2T9J0	TYSND1	Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.578	87.185	2	1.1717E-26	47045	160513_QHF_FH_JSI12Kac_6	176.29	139.9			1.1002	1.1004	7.67	4	0	Median	1.4405	1.21	NaN	1	0	Median	0.88241	1.041	NaN	1	0	Median	1.2418	1.1621	NaN	1	0	Median	0.97474	1.042	NaN	1	0	Median	857480000	419710000	437770000	186440000	72205000	114230000	353940000	195370000	158570000	180820000	81583000	99237000	136280000	70558000	65726000	3226	2798	3041	19809;19810;19811;19812	26992;26993;26994;26995;26996;26997;26998	26995			7	
ALGWTGSTGAALMR	0	Unmodified	1390.7027	0.70271913	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							3	2	2	1	65.091	64.159	2	8.3061E-06	52563	160511_QHF_FH_JSI9i_3	103.22	67.277			0.81778	0.77295	11.978	6	3	Median	0.93162	0.77295	0.70785	2	1	Median	0.57823	0.67531	13.021	2	1	Median	0.81171	0.82916	NaN	1	0	Median	0.8239	0.87148	NaN	1	1	Median	182260000	99540000	82719000	73218000	34480000	38738000	67246000	40399000	26847000	23257000	13046000	10211000	18539000	11615000	6923600	3227	3947	3042	19813;19814;19815;19816;19817;19818;19819;19820	26999;27000;27001;27002;27003;27004;27005;27006	27002			8	
ALGYFAVVTGK	1	Unmodified	1124.623	0.62299547	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	72.517	67.224	2	9.8599E-11	36740	160513_QHF_FH_JSI10Kac_6	131.5	68.085			1.0149	0.98955	11.948	9	1	Median	1.2571	1.0098	5.4062	3	0	Median	0.73856	0.85601	22.496	2	1	Median	0.95556	0.9106	8.5417	2	0	Median	0.95075	0.96481	6.8958	2	0	Median	1555500000	825420000	730050000	331300000	157850000	173450000	340090000	210000000	130080000	486980000	251090000	235890000	397110000	206490000	190620000	3228	409	3043	19821;19822;19823;19824;19825;19826;19827;19828;19829	27007;27008;27009;27010;27011;27012;27013;27014	27014			5	
ALHDHLGLR	0	Unmodified	1030.5672	0.56721192	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			21.807	20.559	2;3	0.0016402	16437	160511_QHF_FH_JSI9i_3	46.001	36.787			0.92476	0.77405	10.24	3	1	Median	0.97142	0.80114	4.8637	2	0	Median	0.58811	0.67788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130670000	73647000	57025000	93760000	48982000	44778000	36912000	24665000	12247000	0	0	0	0	0	0	3229	228	3044	19830;19831;19832	27015;27016;27017	27016			3	
ALHDTGKFTDGQLVSQK	2	Acetyl (K)	1885.9534	0.95339074	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		58.007	47.141	3	0.00027514	25902	160513_QHF_FH_JSI11Kac_5	82.707	66.568			0.16208	0.16167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16208	0.16167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3782600	3259500	523090	0	0	0	0	0	0	3782600	3259500	523090	0	0	0	3230	4609	3045	19833	27018	27018	3194		1	
ALHFVFK	1	Unmodified	860.49086	0.49085908	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.06	6.55		1	8						8	4	5	4	4	51.742	46.894	2;3	0.0021592	39085	160511_QHF_FH_JSI12i_3	75.311	63.264			0.88696	0.91408	18.538	17	1	Median	1.2313	1.0166	10.812	4	0	Median	0.80873	0.93595	29.437	5	1	Median	0.91607	0.851	6.9276	4	0	Median	0.87293	0.91075	9.5823	4	0	Median	3713600000	1862800000	1850800000	1062600000	459840000	602770000	895500000	515380000	380120000	657440000	330390000	327040000	1098100000	557210000	540880000	3231	4850	3046	19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846;19847;19848;19849;19850	27019;27020;27021;27022;27023;27024;27025;27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037;27038;27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056	27044			38	
ALHFVFSPGFINYISGTPHALIVR	0	Unmodified	2655.4326	0.43256293	2526	Q14296	FASTK	Fas-activated serine/threonine kinase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.701	85.98	4	8.1673E-14	49099	160513_QHF_FH_JSI10Kac_6	100.19	84.091			0.922	1.0913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.922	1.0913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128550000	64128000	64425000	0	0	0	128550000	64128000	64425000	0	0	0	0	0	0	3232	2526	3047	19851	27057	27057			1	
ALHFYTFPK	1	Unmodified	1122.5862	0.58621603	4046	Q96EK4	THAP11	THAP domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	3	1	1	1	57.157	54.697	3	0.00048806	46593	160511_QHF_FH_JSI12i_3	66.299	59.079			1.2085	1.2589	8.2308	5	0	Median	1.572	1.2983	2.2933	2	0	Median	1.0924	1.2589	NaN	1	0	Median	1.1505	1.0674	NaN	1	0	Median	1.2085	1.2127	NaN	1	0	Median	382460000	164900000	217560000	84051000	29204000	54847000	58904000	26759000	32145000	78041000	37011000	41030000	161460000	71927000	89533000	3233	4046	3048	19852;19853;19854;19855;19856;19857	27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068;27069;27070	27070			13	
ALHGPSMISK	1	Unmodified	1039.5485	0.54845032	5795				yes	yes	0	0	0	0		By MS/MS			3	0			1								1			15.379	14.447	3	0.049098	11542	160511_QHF_FH_JSI10i_3	25.238	1.5145	+		0.96782	1.0849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96782	1.0849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22598000	12056000	10542000	0	0	0	22598000	12056000	10542000	0	0	0	0	0	0	3234	5795	3049	19858	27071	27071			1	
ALHGSWFDGK	1	Unmodified	1116.5352	0.53524309	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	38.206	37.655	3	0.012101	31826	160511_QHF_FH_JSI12i_3	35.348	27.423			0.79084	0.81033	10.985	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61051	0.70145	NaN	1	1	Median	0.92895	0.87024	NaN	1	0	Median	0.79084	0.81033	NaN	1	0	Median	152090000	86409000	65681000	0	0	0	33575000	19486000	14089000	43365000	21200000	22166000	75150000	45723000	29427000	3235	5538	3050	19859;19860;19861	27072;27073	27073			2	
ALHHGIDLEK	1	Unmodified	1131.6037	0.60365701	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	2	4	19.146	18.753	2;3	4.3189E-05	14482	160511_QHF_FH_JSI12i_3	82.417	60.424			0.65274	0.60307	49.362	9	2	Median	1.3335	1.0872	100.3	2	1	Median	0.75781	0.86476	NaN	1	0	Median	0.47954	0.45279	2.1463	2	1	Median	0.64955	0.66193	20.382	4	0	Median	1600600000	884630000	715960000	129230000	48985000	80245000	173200000	82861000	90340000	85535000	60323000	25212000	1212600000	692460000	520160000	3236	1064	3051	19862;19863;19864;19865;19866;19867;19868;19869;19870;19871;19872	27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086	27081			13	
ALHHGIDLEKIK	2	Acetyl (K)	1414.7932	0.79324869	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	51.18	41.443	3	1.2021E-05	22564	160513_QHF_FH_JSI11Kac_6	91.914	75.822			0.067889	0.070465	184.87	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26406	0.26043	NaN	1	0	Median	0.017454	0.019066	NaN	1	1	Median	16890000	13301000	3588800	0	0	0	0	0	0	13393000	9889600	3503500	3497100	3411800	85247	3237	1064	3052	19873;19874	27087;27088	27087	897		2	
ALHKQMK	2	Acetyl (K)	896.49021	0.49020716	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		14.042	4.75	3	0.013908	5131	160513_QHF_FH_JSI11Kac_6	50.632	22.209			0.30957	0.30306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30957	0.30306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8140400	6108800	2031600	0	0	0	0	0	0	8140400	6108800	2031600	0	0	0	3238	3343	3053	19875	27089;27090	27089	2849		2	
ALHLLAVLEK	1	Unmodified	1105.6859	0.68593008	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	73.22	69.694	3	1.5383E-05	62706	160511_QHF_FH_JSI11i_3	90.108	82.463			1.0581	1.0843	27.791	6	0	Median	1.1625	0.96721	34.081	2	0	Median	0.9133	1.064	NaN	1	0	Median	1.4675	1.3901	32.457	2	0	Median	0.93092	0.95139	NaN	1	0	Median	206080000	94787000	111300000	56559000	23618000	32940000	28190000	14451000	13740000	52975000	23989000	28987000	68358000	32729000	35629000	3239	4802	3054	19876;19877;19878;19879;19880;19881	27091;27092;27093;27094;27095;27096;27097;27098	27092			7	
ALHLLEEYR	0	Unmodified	1142.6084	0.60840804	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.085	45.844	3	0.0026383	39142	160511_QHF_FH_JSI12i_3	49.418	43.155			0.70925	0.71338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70925	0.71338	NaN	1	0	Median	56450000	22940000	33510000	0	0	0	0	0	0	0	0	0	56450000	22940000	33510000	3240	2330	3055	19882	27099	27099			1	
ALHLSDLFSPLPILELTR	0	Unmodified	2034.1514	0.15136227	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		103.05	102.98	3	7.0071E-05	85745	160511_QHF_FH_JSI10i_3	65.231	59.521			0.85399	0.89687	42.071	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0494	1.2076	NaN	1	0	Median	0.69496	0.66609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19096000	9707900	9388500	0	0	0	12160000	5439900	6720100	6936400	4268000	2668400	0	0	0	3241	2654	3056	19883;19884	27100;27101	27101			2	
ALHLVEDLR	0	Unmodified	1064.5978	0.59784335	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	45.02	44.475	3	0.0001462	37666	160511_QHF_FH_JSI12i_3	66.27	32.892			1.1936	1.2164	48.947	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3087	1.2396	NaN	1	0	Median	0.76266	0.79996	59.268	2	1	Median	205800000	92035000	113770000	0	0	0	0	0	0	83906000	30132000	53774000	121900000	61903000	59995000	3242	3353	3057	19885;19886;19887;19888;19889	27102;27103;27104;27105;27106	27106			5	
ALHNLAQQAPEFSATQVFPR	0	Unmodified	2224.1389	0.1389001	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			72.863	71.4	3	9.7874E-09	59856	160511_QHF_FH_JSI10i_3	105.77	91.314			1.1835	1.1525	3.5656	2	0	Median	1.3726	1.1238	NaN	1	0	Median	1.0205	1.1819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186420000	84998000	101420000	120880000	49725000	71155000	65542000	35273000	30269000	0	0	0	0	0	0	3243	4424	3058	19890;19891	27107;27108;27109;27110;27111	27108			5	
ALHPVQFYLTSHGGQLK	1	Unmodified	1895.0054	0.0053667345	3698	Q8TBZ6	TRMT10A	tRNA methyltransferase 10 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			2						2	1	2		1	63.878	58.656	3;4	1.333E-05	49425	160511_QHF_FH_JSI10i_3	84.195	75.099			0.84957	0.96152	14.661	4	1	Median	1.29	1.0489	NaN	1	1	Median	0.73823	0.87344	20.493	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84161	0.91569	NaN	1	0	Median	81354000	42151000	39203000	26880000	12588000	14291000	43298000	23413000	19885000	0	0	0	11177000	6150100	5026600	3244	3698	3059	19892;19893;19894;19895	27112;27113;27114	27112			2	
ALHQYTLEPSEK	1	Unmodified	1414.7092	0.70924429	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.6	5.2			4						1	1		2	2	27.592	27.569	2;3	4.8004E-05	23706	160511_QHF_FH_JSI11i_3	110.39	90.625			1.1341	1.0803	24.04	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0505	0.96641	19.741	2	2	Median	1.2569	1.2577	25.494	2	2	Median	100770000	48604000	52162000	0	0	0	0	0	0	41462000	21825000	19636000	59304000	26779000	32525000	3245	5234	3060	19896;19897;19898;19899;19900	27115;27116;27117;27118;27119	27116			5	
ALHSDRPPSASQPR	0	Unmodified	1517.7699	0.76988749	149	O00534	VWA5A	von Willebrand factor A domain-containing protein 5A	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			28.576	27.647	3	0.049412	24213	160511_QHF_FH_JSI10i_2	24.558	9.8719			0.19728	0.24529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19728	0.24529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109690000	86777000	22911000	0	0	0	109690000	86777000	22911000	0	0	0	0	0	0	3246	149	3061	19901	27120	27120			1	
ALHSKLQALGK	2	Acetyl (K)	1206.7085	0.70845643	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.787	39.085	2	0.020028	21269	160513_QHF_FH_JSI11Kac_6	70.1	52.236			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3247	3844	3062	19902	27121	27121	2957		1	
ALHSLLLR	0	Unmodified	921.57599	0.5759857	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	44.22	39.168	3	5.0511E-05	21664	160513_QHF_FH_JSI11Kac_6	116.73	64.938			0.93156	0.97444	12.004	8	0	Median	1.1788	0.99165	4.7897	2	0	Median	0.82163	0.95176	17.853	2	0	Median	0.93705	0.88097	16.574	2	0	Median	0.8734	0.93355	15.721	2	0	Median	424400000	222240000	202160000	101030000	47061000	53964000	199450000	114660000	84789000	84264000	40122000	44142000	39664000	20398000	19266000	3248	2629	3063	19903;19904;19905;19906;19907;19908;19909;19910;19911	27122;27123;27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136	27127			15	
ALHSVLQAVPLNELR	0	Unmodified	1658.9468	0.94678922	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	2	1	1	75.842	74.78	2;3	3.3694E-21	61567	160511_QHF_FH_JSI9i_3	171.05	108.75			0.83786	0.8239	14.637	7	4	Median	1.1795	0.94311	9.8733	3	2	Median	0.76572	0.89357	11.48	2	0	Median	0.83786	0.77969	NaN	1	1	Median	0.65791	0.65842	NaN	1	1	Median	546920000	270940000	275990000	292890000	132320000	160560000	144280000	80435000	63845000	67591000	33709000	33882000	42166000	24469000	17698000	3249	2730	3064	19912;19913;19914;19915;19916;19917;19918	27137;27138;27139;27140;27141;27142;27143;27144;27145;27146;27147;27148;27149	27144			13	
ALHTQLEMQAK	1	Unmodified	1268.6547	0.6547063	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	25.508	25.476	2;3	4.2234E-06	21225	160511_QHF_FH_JSI12i_3	108.43	67.446			1.4292	1.4395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4292	1.4395	NaN	1	0	Median	79265000	31803000	47462000	0	0	0	0	0	0	0	0	0	79265000	31803000	47462000	3250	2574	3065	19919;19920	27150;27151	27150			1	
ALHVNNDR	0	Unmodified	937.47298	0.47297719	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			6.1454	5.6314	2;3	0.0008741	3631	160511_QHF_FH_JSI9i_3	67.993	57.119			0.97862	0.99592	16.066	3	2	Median	1.1538	0.93264	22.079	2	2	Median	0.87639	0.99592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	340470000	166570000	173900000	193340000	82958000	110380000	147120000	83614000	63511000	0	0	0	0	0	0	3251	3101	3066	19921;19922;19923;19924	27152;27153;27154;27155;27156	27156			5	
ALHWLQLFLEGLR	0	Unmodified	1594.8984	0.89838247	2960	Q5TA50	CPTP	Ceramide-1-phosphate transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			96.606	89.77	2;3	2.7068E-18	52595	160513_QHF_FH_JSI10Kac_6	146.5	126.27			0.97521	1.1709	24.348	3	2	Median	2.0745	1.7736	NaN	1	1	Median	0.97326	1.1635	0.89817	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	620990000	263030000	357960000	150960000	48903000	102050000	470040000	214130000	255910000	0	0	0	0	0	0	3252	2960	3067	19925;19926;19927	27157;27158;27159	27158			3	
ALIAAQYSGAQVR	0	Unmodified	1346.7306	0.73064844	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.35	7	6	8	1	1	3	5	8	8	10	14	12	11	49.451	43.614	2;3	4.1367E-82	38214	160511_QHF_FH_JSI9i_2	247.51	123.79			0.95423	1.0144	11.976	44	2	Median	1.3239	1.142	10.599	9	0	Median	0.8793	1.0272	8.15	12	0	Median	0.9999	0.97618	8.7141	12	1	Median	0.91733	0.94336	10.548	11	1	Median	22105000000	10465000000	11641000000	4215300000	1892300000	2323000000	6050500000	3062900000	2987700000	7149400000	3279700000	3869600000	4690200000	2229800000	2460400000	3253	1284	3068	19928;19929;19930;19931;19932;19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974	27160;27161;27162;27163;27164;27165;27166;27167;27168;27169;27170;27171;27172;27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234	27197			70	
ALIADSGLK	1	Unmodified	886.51238	0.51238239	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.593	36.241	2	0.0017268	30861	160511_QHF_FH_JSI12i_2	69.825	12.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3254	5223	3069	19975	27235	27235			1	
ALIAEHQTFMEEMTR	0	Unmodified	1805.844	0.84403999	5458;2199	Q9UPN3;Q03001	MACF1;DST	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.585	60.448	3	0.001842	52174	160511_QHF_FH_JSI12i_3	99.927	88.983			1.3541	1.3175	30.896	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1304	1.059	NaN	1	0	Median	1.6222	1.6392	NaN	1	0	Median	260080000	126060000	134020000	0	0	0	0	0	0	110350000	60789000	49558000	149730000	65274000	84460000	3255	5458;2199	3070	19976;19977	27236;27237	27237			0	
ALIAGGGAPEIELALR	0	Unmodified	1549.8828	0.88279198	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	4	8	6							3	5	5	5	86.662	86.164	2;3	8.4975E-22	74459	160511_QHF_FH_JSI12i_2	176.8	143.39			0.94803	1.0122	17.735	18	0	Median	1.3639	1.1988	3.2636	3	0	Plateau	0.71291	0.86988	11.198	5	0	Median	0.95568	0.92643	11.029	5	0	Median	0.94043	1.076	23.77	5	0	Median	1587500000	821010000	766450000	246760000	97433000	149330000	261040000	156550000	104500000	486910000	252610000	234300000	592750000	314430000	278330000	3256	1722	3071	19978;19979;19980;19981;19982;19983;19984;19985;19986;19987;19988;19989;19990;19991;19992;19993;19994;19995	27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270	27244			33	
ALIAQLPSPAIDHEQLR	0	Unmodified	1871.0265	0.026496107	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	69.993	69.502	3	6.8255E-07	60171	160511_QHF_FH_JSI12i_3	117.4	106.36			1.0643	1.0187	2.4318	4	0	Median	1.1669	1.0161	NaN	1	0	Median	0.81133	0.98869	NaN	1	0	Median	1.1114	1.0491	NaN	1	0	Median	1.0192	1.0213	NaN	1	0	Median	284260000	144820000	139440000	31723000	15837000	15886000	37796000	22992000	14804000	109380000	58133000	51243000	105360000	47861000	57503000	3257	5458	3072	19996;19997;19998;19999;20000	27271;27272;27273;27274;27275	27275			5	
ALIDPSSGLPNRLPPGAVPPGAR	0	Unmodified	2251.2437	0.24369953	3836	Q92530	PSMF1	Proteasome inhibitor PI31 subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			74.09	72.641	3	0.00039496	60798	160511_QHF_FH_JSI10i_3	49.089	40.937			0.98656	1.1047	15.663	3	2	Median	1.3298	1.1047	NaN	1	0	Median	0.87335	1.0204	21.181	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38415000	21024000	17391000	17034000	6917000	10117000	21381000	14107000	7273500	0	0	0	0	0	0	3258	3836	3073	20001;20002;20003	27276;27277;27278	27277			3	
ALIDQEVK	1	Unmodified	914.5073	0.50729701	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.14	4	1				3	3			1	4	3	3	33.323	28.035	2	0.00011874	24508	160511_QHF_FH_JSI9i_1	127.56	43.95			0.89335	0.89179	13.074	11	1	Median	1.0967	0.89179	NaN	1	0	Median	0.73088	0.86081	15.202	4	1	Median	0.89732	0.86645	12.876	3	0	Median	0.95697	1.0297	14.985	3	0	Median	1355600000	692920000	662700000	271510000	139950000	131550000	402970000	209880000	193090000	348630000	181290000	167340000	332520000	161790000	170730000	3259	548	3074	20004;20005;20006;20007;20008;20009;20010;20011;20012;20013;20014	27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291	27287			13	
ALIDSVIPK	1	Unmodified	954.57498	0.57498264	1323	P29466;Q5EG05	CASP1;CARD16	Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10;Caspase recruitment domain-containing protein 16	yes	no	0	0	0	0			By MS/MS		14	0							1					1		71.438	60.515	2	0.03826	33095	160513_QHF_FH_JSI11Kac_4	51.854	33.819			1.4973	1.3709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4973	1.3709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1591600	573780	1017900	0	0	0	0	0	0	1591600	573780	1017900	0	0	0	3260	1323	3075	20015	27292	27292			1	
ALIDYENSNK	1	Unmodified	1165.5615	0.56151742	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			2	1	2	3	33.181	31.33	2	7.3017E-11	27673	160511_QHF_FH_JSI9i_1	144.09	117.49			0.72147	0.70571	18.56	8	4	Median	0.80273	0.67435	8.9398	2	1	Median	0.6139	0.72453	NaN	1	0	Median	0.81104	0.79711	19.736	2	1	Median	0.49477	0.77681	24.185	3	2	Plateau	705910000	395850000	310050000	148570000	71918000	76647000	143470000	88438000	55036000	237410000	129960000	107450000	176450000	105530000	70919000	3261	5687	3076	20016;20017;20018;20019;20020;20021;20022;20023	27293;27294;27295;27296;27297;27298;27299;27300;27301	27299			9	
ALIEAEK	1	Unmodified	772.43307	0.43306943	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			19.761	19.053	2	0.013927	16332	160511_QHF_FH_JSI10i_1	67.032	8.0509			0.93257	0.92983	25.652	2	0	Median	0.93165	0.77558	NaN	1	0	Median	0.93349	1.1148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	389050000	200380000	188670000	163850000	77806000	86040000	225210000	122570000	102630000	0	0	0	0	0	0	3262	622	3077	20024;20025	27302;27303	27303			2	
ALIEFTKPFVEEVIDNK	2	Unmodified	1991.0615	0.061544209	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	100.84	100.76	3	3.9978E-32	89790	160511_QHF_FH_JSI11i_3	158.98	132.5			0.80284	0.84524	14.206	4	1	Median	NaN	NaN	NaN	0	0	Median	0.69926	0.7996	22.859	2	1	Median	0.95917	0.8895	NaN	1	0	Median	0.78388	0.80318	NaN	1	0	Median	259900000	144060000	115840000	0	0	0	99211000	58597000	40614000	94370000	51810000	42561000	66320000	33657000	32664000	3263	3918	3078	20026;20027;20028;20029	27304;27305;27306;27307	27304			4	
ALIEHEMK	1	Unmodified	969.49535	0.49535211	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	16.688	16.713	2	0.036037	13301	160511_QHF_FH_JSI12i_3	40.352	30.273			0.8719	0.81932	39.512	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1843	1.0834	NaN	1	0	Median	0.6419	0.6196	NaN	1	0	Median	85193000	42912000	42281000	0	0	0	0	0	0	40793000	22308000	18485000	44400000	20604000	23796000	3264	685	3079	20030;20031	27308	27308			1	
ALIEILATR	0	Unmodified	998.61243	0.61243078	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	3	2	73.055	69.489	2	3.6819E-08	57822	160511_QHF_FH_JSI9i_3	147.19	22.351			0.96152	0.93277	11.881	11	0	Median	1.2718	1.0329	10.277	3	0	Median	0.88293	1.0264	9.5734	3	0	Median	0.94987	0.91493	7.5125	3	0	Median	0.90214	0.92666	21.24	2	0	Median	1580200000	822820000	757410000	438060000	199010000	239050000	430690000	237570000	193120000	462730000	243680000	219050000	248750000	142560000	106190000	3265	891	3080	20032;20033;20034;20035;20036;20037;20038;20039;20040;20041;20042	27309;27310;27311;27312;27313;27314;27315;27316;27317;27318;27319;27320;27321;27322;27323;27324;27325	27315			15	
ALIEMEK	1	Unmodified	832.43644	0.43644025	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	3	2	36.754	34.216	2	0.0033031	28894	160511_QHF_FH_JSI11i_2	105.39	21.776			1.0629	1.1576	24.392	11	0	Median	1.2888	1.0772	21.331	3	0	Median	0.92853	1.1273	8.9554	3	0	Median	1.5261	1.5518	17.664	3	0	Median	0.85836	0.93017	32.163	2	0	Median	5567900000	2554700000	3013200000	1046700000	417470000	629180000	1326700000	733050000	593650000	1995700000	774900000	1220800000	1198800000	629250000	569540000	3266	2644	3081	20043;20044;20045;20046;20047;20048;20049;20050;20051;20052;20053	27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342	27339			17	
ALIEVLQPLIAEHQAR	0	Unmodified	1800.0258	0.025767826	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	89.105	88.539	2;3	8.4466E-52	78890	160511_QHF_FH_JSI11i_3	215.85	182.62			0.92491	0.91509	8.2629	10	0	Median	1.0508	0.8951	6.249	3	0	Plateau	0.73668	0.84576	6.0872	3	0	Plateau	1.0688	0.99847	1.4472	2	0	Median	0.76938	0.80801	3.3597	2	0	Median	2580300000	1304600000	1275700000	831320000	366180000	465140000	715550000	403430000	312120000	845070000	439690000	405390000	188370000	95292000	93076000	3267	1226	3082	20054;20055;20056;20057;20058;20059;20060;20061;20062;20063	27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356;27357;27358;27359;27360;27361;27362;27363	27345			21	
ALIEWIR	0	Unmodified	899.52289	0.52288749	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		69.316	68.33	2	0.014706	60761	160511_QHF_FH_JSI11i_3	65.803	13.504			1.0045	0.96225	5.7837	3	0	Plateau	1.1616	0.96177	NaN	1	0	Median	0.75429	0.87031	NaN	1	0	Median	1.0045	0.96225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	352650000	174120000	178530000	105560000	49027000	56536000	67587000	41779000	25807000	179500000	83309000	96187000	0	0	0	3268	594	3083	20064;20065;20066	27364;27365	27364			2	
ALIGATNPADAPPGTIR	0	Unmodified	1633.8788	0.87876924	2375	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	54.945	54.244	2	1.2253E-15	46974	160511_QHF_FH_JSI11i_2	162.31	132.54			0.96135	0.94904	27.798	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81716	1.0183	NaN	1	0	Median	0.96135	0.94904	NaN	1	0	Median	0.58504	0.60975	NaN	1	1	Median	81814000	46491000	35323000	0	0	0	19460000	10986000	8473800	42347000	22565000	19782000	20007000	12940000	7067100	3269	2375	3084	20067;20068;20069;20070	27366;27367;27368;27369	27368			3	
ALIGQEGDPDLK	1	Unmodified	1254.6456	0.6455814	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.1	42.332	2	1.7016E-05	38111	160511_QHF_FH_JSI11i_1	112.85	65.954			0.92237	0.85686	9.983	5	2	Median	1.1383	0.93841	16.919	2	2	Median	0.71326	0.85079	NaN	1	0	Median	0.86778	0.85686	NaN	1	0	Median	0.92237	0.9443	NaN	1	0	Median	336300000	176270000	160030000	97437000	46275000	51163000	76987000	43376000	33611000	93097000	50731000	42366000	68777000	35885000	32892000	3270	2305	3085	20071;20072;20073;20074;20075	27370;27371;27372;27373;27374;27375;27376;27377;27378	27371			9	
ALIHSACVK	1	Unmodified	997.53789	0.53788563	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			5							1	1	1	2	16.169	15.769	2;3	0.0025352	12238	160511_QHF_FH_JSI12i_3	64.265	5.0593			1.9985	1.6763	54.184	5	2	Median	1.9985	1.6763	NaN	1	0	Median	0.85951	0.98139	NaN	1	0	Median	0.75063	0.68505	NaN	1	1	Median	2.2496	2.3169	0.8902	2	1	Median	327240000	127460000	199770000	15519000	6408400	9110700	23626000	13163000	10463000	35006000	19996000	15010000	253090000	87896000	165190000	3271	2266	3086	20076;20077;20078;20079;20080	27379;27380;27381	27380			3	
ALIIIWAK	1	Unmodified	926.59532	0.59532415	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	82.209	77.61	1;2	0.00038521	40139	160513_QHF_FH_JSI9Kac_6	114.54	103.67			0.6858	0.72007	17.276	9	0	Linear	1.0022	0.82712	16.345	2	0	Median	0.68391	0.81712	21.299	3	0	Plateau	1.0802	1.0323	7.9212	2	0	Median	1.0658	1.1042	15.33	2	0	Median	780610000	407560000	373040000	174850000	91599000	83248000	434300000	236210000	198090000	101660000	45838000	55827000	69796000	33918000	35878000	3272	1892	3087	20081;20082;20083;20084;20085;20086;20087;20088;20089	27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392;27393;27394;27395	27388			14	
ALILGFMAGSR	0	Unmodified	1134.6219	0.62194961	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		81.994	73.02	2	0.023491	40246	160513_QHF_FH_JSI11Kac_6	63.426	44.651			1.3952	1.2766	17.771	2	0	Median	1.6814	1.4476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1576	1.1259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76229000	32590000	43639000	44981000	18103000	26877000	0	0	0	31249000	14487000	16761000	0	0	0	3273	4699	3088	20090;20091	27396	27396			0	
ALILSPTR	0	Unmodified	869.53345	0.53345218	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	40.191	39.619	2	0.0014339	35108	160511_QHF_FH_JSI11i_3	89.55	0			0.85978	0.86044	15.77	6	3	Median	1.3966	1.1367	NaN	1	0	Median	0.6934	0.84357	NaN	1	0	Median	1.0126	0.93655	9.1875	2	1	Median	0.75248	0.76333	2.9614	2	2	Median	592190000	310200000	281990000	81212000	34213000	46999000	81617000	43691000	37926000	168500000	84811000	83691000	260860000	147490000	113380000	3274	3720	3089	20092;20093;20094;20095;20096;20097;20098	27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407	27398			11	
ALILVGGYGTR	0	Unmodified	1118.6448	0.64479354	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.18		2	4					6	4	5	4	3	4	66.573	60.02	2	3.5242E-07	32395	160513_QHF_FH_JSI11Kac_6	112.11	95.011			1.1412	1.133	32.247	16	3	Median	1.3541	1.1676	28.962	5	1	Median	1.0618	1.2621	24.768	4	1	Median	0.8665	0.82921	33.644	3	1	Median	0.89998	0.95142	20.734	4	0	Median	1146000000	564640000	581330000	218150000	75289000	142870000	398020000	181600000	216420000	372500000	224900000	147600000	157300000	82851000	74444000	3275	5672	3090	20099;20100;20101;20102;20103;20104;20105;20106;20107;20108;20109;20110;20111;20112;20113;20114	27408;27409;27410;27411;27412;27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423;27424;27425;27426;27427;27428	27411			21	
ALINLVQGK	1	Unmodified	954.58622	0.58621603	3587	Q8NB91	FANCB	Fanconi anemia group B protein	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	3	0			3							1	1		1	54.575	53.454	2	0.0029033	43842	160511_QHF_FH_JSI9i_3	62.659	35.538			0.92365	1.0243	13.329	3	0	Median	1.3537	1.1303	NaN	1	0	Median	0.89531	1.0243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92365	0.86826	NaN	1	0	Median	58110000	28694000	29416000	13835000	7728500	6106400	12063000	5730700	6332600	0	0	0	32212000	15235000	16977000	3276	3587	3091	20115;20116;20117	27429	27429			1	
ALINMSSLPAQDK	1	Unmodified	1386.7177	0.71770049	2850	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		60.022	59.241	2	8.832E-07	52477	160511_QHF_FH_JSI10i_2	88.596	64.566			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3277	2850	3092	20118;20119;20120	27430;27431;27432	27432			3	
ALINSPEGAVGR	0	Unmodified	1182.6357	0.63568542	92	O00115	DNASE2	Deoxyribonuclease-2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	38.086	37.423	2	1.2089E-10	32820	160511_QHF_FH_JSI11i_3	143.03	128.74			1.0349	1.0411	15.524	6	0	Median	1.2348	1.0483	NaN	1	0	Median	0.67033	0.81181	NaN	1	0	Median	1.0349	0.99787	5.0198	2	0	Median	1.0847	1.1767	15.353	2	0	Median	1059000000	501160000	557860000	165900000	76742000	89162000	158660000	88601000	70064000	393330000	176010000	217320000	341130000	159810000	181310000	3278	92	3093	20121;20122;20123;20124;20125;20126	27433;27434;27435;27436;27437;27438;27439;27440;27441	27433			8	
ALINSVQQNREDILNAGDK	1	Unmodified	2097.0814	0.081444804	5115	Q9NXX6	NSMCE4A	Non-structural maintenance of chromosomes element 4 homolog A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.952	52.369	3	0.057559	43038	160511_QHF_FH_JSI9i_3	24.594	16.204			1.0591	0.8641	NaN	1	0	Median	1.0591	0.8641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18575000	7959800	10615000	18575000	7959800	10615000	0	0	0	0	0	0	0	0	0	3279	5115	3094	20127	27442	27442			1	
ALIPLALEGTDVGQTK	1	Unmodified	1624.9036	0.903587	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	83.779	83.045	2;3	1.5407E-05	71812	160511_QHF_FH_JSI12i_2	69.729	65.163			0.87398	0.91751	22.457	6	1	Median	1.0069	0.88157	NaN	1	1	Median	0.78338	0.95492	NaN	1	0	Median	1.009	0.99129	2.5094	2	0	Median	0.59626	0.63956	17.171	2	0	Median	210590000	119710000	90876000	31371000	16158000	15213000	39479000	24930000	14550000	86423000	44142000	42281000	53316000	34485000	18832000	3280	4704	3095	20128;20129;20130;20131;20132;20133	27443;27444;27445;27446;27447;27448	27444			4	
ALIQCAK	1	Unmodified	802.43711	0.43710895	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	23.096	14.318	2	0.0031028	9601	160513_QHF_FH_JSI10Kac_4	101.33	38.614			0.75306	0.8897	24.041	6	0	Median	NaN	NaN	NaN	0	0	Median	0.74776	0.8897	12.375	2	0	Median	0.65364	0.64711	10.564	2	0	Median	0.9963	1.073	3.2785	2	0	Median	64765000	36140000	28625000	0	0	0	21257000	12407000	8850500	25437000	15278000	10159000	18071000	8455600	9615200	3281	1139	3096	20134;20135;20136;20137;20138;20139	27449;27450;27451;27452;27453	27449			5	
ALIQSMLEK	1	Unmodified	1031.5685	0.56851706	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.229	55.981	2	0.00022946	48099	160511_QHF_FH_JSI12i_3	88.948	54.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3282	5472	3097	20140	27454	27454			1	
ALIQYFSPYVSADMHR	0	Unmodified	1896.9193	0.91925384	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	4	5	3	3	81.527	78.291	2;3	3.4952E-53	40951	160513_QHF_FH_JSI10Kac_6	222.99	189.1			0.91848	1.0278	9.9167	14	0	Median	1.2586	1.0278	15.661	4	0	Median	0.89624	1.0356	9.2729	5	0	Median	1.11	1.0634	5.2728	3	0	Median	0.90763	0.94934	5.1956	2	0	Median	2437900000	1212100000	1225700000	583800000	257100000	326700000	734570000	369590000	364980000	732110000	379290000	352820000	387380000	206140000	181240000	3283	2349	3098	20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155	27455;27456;27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478;27479;27480;27481	27481			27	
ALIQYFSPYVSADMHR	0	Oxidation (M)	1912.9142	0.91416847	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	75.382	74.329	3	7.9148E-05	61085	160511_QHF_FH_JSI9i_3	71.354	68.803			0.97099	1.1298	14.097	3	0	Plateau	1.341	1.0921	NaN	1	0	Median	0.97099	1.1591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83727	0.8862	NaN	1	0	Median	203380000	100220000	103160000	76853000	35296000	41557000	78015000	37359000	40656000	0	0	0	48512000	27568000	20944000	3284	2349	3098	20156;20157;20158	27482;27483;27484;27485;27486	27484		1926	5	
ALIVEPSR	0	Unmodified	883.51272	0.51271674	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		41.517	31.474	2	0.0098558	19087	160513_QHF_FH_JSI11Kac_4	67.981	38.643			1.2394	1.2237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2394	1.2237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4382500	2079300	2303300	0	0	0	0	0	0	4382500	2079300	2303300	0	0	0	3285	3828	3099	20159	27487	27487			1	
ALIVEPSRELAEQTLNNIK	1	Unmodified	2137.1743	0.17428256	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	80.805	80.178	2;3	1.3373E-54	69519	160511_QHF_FH_JSI12i_3	222.3	186.67			0.98268	1.0168	13.651	10	0	Median	1.0007	0.84176	17.307	2	0	Median	0.8896	1.0598	2.1684	2	0	Median	1.1212	1.0402	13.239	3	0	Median	0.96009	0.95604	7.1146	3	0	Median	2403500000	1161400000	1242100000	228190000	103890000	124300000	231120000	124930000	106190000	964890000	419180000	545710000	979290000	513410000	465880000	3286	3828	3100	20160;20161;20162;20163;20164;20165;20166;20167;20168;20169	27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510	27505			23	
ALIVLAHSER	0	Unmodified	1107.64	0.64004252	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.42		1	8					2	10	6	7	5	3	40.88	34.965	2;3	3.8017E-35	19410	160513_QHF_FH_JSI10Kac_6	177.06	110.37			0.9551	0.98161	44.417	20	6	Median	1.347	1.1295	34.61	6	1	Median	0.85471	0.95673	47.117	7	3	Median	1.0338	0.96716	58.427	5	2	Median	0.84765	0.88987	0.29298	2	0	Median	8208100000	3475400000	4732700000	2112300000	671790000	1440500000	4593100000	2047700000	2545400000	1210100000	602200000	607910000	292550000	153690000	138860000	3287	1080	3101	20170;20171;20172;20173;20174;20175;20176;20177;20178;20179;20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190	27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544;27545;27546;27547;27548;27549;27550;27551	27548			41	
ALIVVPYAEGVIPDEAK	1	Unmodified	1782.9768	0.97675195	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								3	3	3	3	93.757	93.41	2;3	9.6487E-07	84925	160511_QHF_FH_JSI11i_1	112.5	93.905			1.1028	1.0806	7.9947	12	2	Median	1.3126	1.0585	6.2127	3	0	Plateau	0.87684	1.016	11.031	3	0	Median	1.1558	1.1264	2.5501	3	0	Median	1.0711	1.081	9.1774	3	2	Median	752480000	367070000	385400000	122450000	61247000	61199000	161590000	83886000	77706000	174140000	84687000	89458000	294300000	137250000	157040000	3288	2230	3102	20191;20192;20193;20194;20195;20196;20197;20198;20199;20200;20201;20202	27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569;27570	27553			19	
ALIVVQQGMTPSAK	1	Unmodified	1441.7963	0.79628516	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	4.79			3			1	5	4		2	6	3	2	64.757	54.974	2;3	1.2076E-16	27705	160513_QHF_FH_JSI10Kac_5	165.11	130.58			1.0135	1.2078	30.959	9	3	Median	0.98929	0.84435	NaN	1	0	Median	0.67571	0.80137	21.306	4	3	Median	1.2792	1.2304	26.289	3	0	Median	1.1992	1.2901	NaN	1	0	Median	70569000	36113000	34456000	4868700	2238900	2629800	37037000	22455000	14582000	25109000	9747100	15362000	3554100	1671900	1882200	3289	1157	3103	20203;20204;20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215	27571;27572;27573;27574;27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588	27588			18	
ALIVVQQGMTPSAK	1	Oxidation (M)	1457.7912	0.79119978	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		14	0							3				2	1		54.197	43.523	2;3	0.00073739	24184	160513_QHF_FH_JSI10Kac_4	78.655	70.142			0.80497	1.113	11.936	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90944	1.0867	16.767	2	0	Median	1.119	1.113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11952000	5623400	6328700	0	0	0	8564900	4088000	4477000	3387200	1535400	1851700	0	0	0	3290	1157	3103	20216;20217;20218	27589;27590;27591	27589		789	3	
ALIYLWHGCK	1	Unmodified	1259.6485	0.64849871	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		69.301	59.788	3	0.00011953	32427	160513_QHF_FH_JSI11Kac_6	76.465	63.061			0.97051	0.94671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97051	0.94671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94333000	42894000	51439000	0	0	0	0	0	0	94333000	42894000	51439000	0	0	0	3291	693	3104	20219	27592	27592			1	
ALKDEEK	2	Unmodified	831.4338	0.43379771	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	2	3	4	4.9889	4.7335	2;3	9.6824E-05	2466	160511_QHF_FH_JSI11i_3	144.38	30.679			0.96733	1.0267	13.176	10	0	Median	1.2783	1.0712	NaN	1	0	Median	0.74553	0.9021	2.4275	2	0	Median	1.2296	1.1796	8.1065	3	0	Median	0.92729	0.98214	7.122	4	0	Median	9485700000	4608000000	4877800000	723240000	275760000	447470000	1997300000	1180900000	816460000	2755600000	1271500000	1484100000	4009500000	1879800000	2129700000	3292	858	3105	20220;20221;20222;20223;20224;20225;20226;20227;20228;20229	27593;27594;27595;27596;27597;27598;27599;27600;27601;27602;27603;27604	27594			12	
ALKDEEK	2	Acetyl (K)	873.44436	0.4443624	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		15.064	7.7002	2	0.036446	6383	160513_QHF_FH_JSI11Kac_3	66.27	16.144			0.3551	0.3523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3551	0.3523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46935000	33450000	13485000	0	0	0	0	0	0	46935000	33450000	13485000	0	0	0	3293	858	3105	20230	27605	27605			1	
ALKDYALEK	2	Acetyl (K);Acetyl (Protein N-term)	1133.5968	0.5968403	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	77.125	68.74	2	0.00034465	29764	160513_QHF_FH_JSI12Kac_2	87.308	56.234			0.61812	0.68779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61812	0.68779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1202200	755150	447100	0	0	0	1202200	755150	447100	0	0	0	0	0	0	3294	1411	3106	20231;20232;20233	27606;27607;27608	27608	1366;1367		3	
ALKGIGTDEFTLNR	1	Acetyl (K)	1575.8257	0.82567103	1018	P12429	ANXA3	Annexin A3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.833	67.223	2	0.019065	35733	160513_QHF_FH_JSI11Kac_5	59.542	25.164			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1838300	1838300	0	0	0	0	0	0	0	1838300	1838300	0	0	0	0	3295	1018	3107	20234	27609	27609	832		1	
ALKMIVDPVEPHGEMK	2	Acetyl (K)	1834.9321	0.93212672	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.709	65.044	3	0.025886	34623	160513_QHF_FH_JSI11Kac_5	42.813	32.155			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3766700	3766700	0	0	0	0	0	0	0	3766700	3766700	0	0	0	0	3296	2380	3108	20235	27610	27610	2447		1	
ALKMIVDPVEPHGEMK	2	Acetyl (K);2 Oxidation (M)	1866.922	0.92195596	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	2	1			By MS/MS	By matching	15	0								2				1	1	62.426	51.601	3	0.024781	28236	160513_QHF_FH_JSI11Kac_5	38.613	33.184			0.53197	0.54904	43.663	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41279	0.4032	NaN	1	0	Median	0.68555	0.74764	NaN	1	0	Median	8623400	6021600	2601700	0	0	0	0	0	0	6134000	4411200	1722800	2489400	1610500	878930	3297	2380	3108	20236;20237	27611	27611	2447	1931	0	
ALKMIVDPVEPHGEMK	2	Acetyl (K);Oxidation (M)	1850.927	0.92704134	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	1	1		By MS/MS			15	0								1			1			71.933	61.35	3	0.0097334	30728	160513_QHF_FH_JSI10Kac_5	45.14	37.731			0.53455	0.61436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53455	0.61436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3133400	1837200	1296100	0	0	0	3133400	1837200	1296100	0	0	0	0	0	0	3298	2380	3108	20238	27612	27612	2447	1931	1	
ALKPEVDK	2	Unmodified	898.51238	0.51238239	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	2	2	11.958	11.759	2;3	0.002808	8902	160511_QHF_FH_JSI12i_3	66.692	39.438			0.98357	1.0105	21.946	6	0	Median	1.6876	1.4362	NaN	1	0	Median	0.94657	1.0618	NaN	1	0	Median	0.92743	0.86345	15.234	2	0	Median	0.98597	1.0088	20.792	2	0	Median	4681800000	2583400000	2098400000	81642000	30541000	51102000	139100000	65346000	73755000	1243700000	583810000	659910000	3217300000	1903700000	1313600000	3299	1421	3109	20239;20240;20241;20242;20243;20244	27613;27614;27615;27616;27617;27618;27619;27620;27621	27621			9	
ALKPPPIK	2	Unmodified	862.56402	0.56402403	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			24						3	9	5	7	6	25.13	23.722	2;3	0.0049201	19548	160511_QHF_FH_JSI10i_3	51.854	35.314			1.1137	1.1224	26.476	11	11	Median	1.2621	1.0176	41.014	4	4	Median	1.1003	1.277	2.7238	2	2	Median	1.1815	1.1163	0.77586	2	2	Median	0.88223	0.90387	23.35	3	3	Median	12640000000	5982500000	6657600000	3458400000	1542500000	1915900000	1910900000	921610000	989270000	2700800000	1215600000	1485200000	4570000000	2302800000	2267200000	3300	1023	3110	20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271	27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650	27633			29	
ALKQISSNK	2	Acetyl (K);Acetyl (Protein N-term)	1071.5924	0.59242362	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	55.009	45.627	2	0.0021542	20020	160513_QHF_FH_JSI10Kac_2	48.794	40.262			1.0857	1.2078	18.128	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2188	1.3784	13.497	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99151	1.0675	12.271	2	0	Median	10289000	4849500	5439700	0	0	0	5176800	2256700	2920100	0	0	0	5112300	2592700	2519600	3301	979	3111	20272;20273;20274;20275;20276;20277	27651;27652;27653;27654;27655;27656;27657;27658	27653	749		7	
ALKSCSPELQQK	2	Acetyl (K)	1429.7235	0.72351415	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						2	1				1	1	1	40.038	30.751	2;3	0.0037477	17088	160513_QHF_FH_JSI10Kac_3	56.205	43.937			0.22404	0.20546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22404	0.20546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2733600	2614900	118670	0	0	0	0	0	0	1465600	1346900	118670	1268000	1268000	0	3302	1092	3112	20278;20279;20280	27659;27660;27661	27661	944;945		3	
ALKTRRPRSR	1	Unmodified	1239.7636	0.76362032	4251	Q96SZ6	CDK5RAP1	CDK5 regulatory subunit-associated protein 1	yes	yes	0	0	0	4			By MS/MS		16	0									1			1		97.406	87.999	2	0.061119	50220	160513_QHF_FH_JSI11Kac_6	29.81	2.6947			0.46538	0.43874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46538	0.43874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	216350000	63213000	153140000	0	0	0	0	0	0	216350000	63213000	153140000	0	0	0	3303	4251	3113	20281	27662	27662			1	
ALKYEPTNVR	1	Acetyl (K)	1231.6561	0.65608651	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.71	37.269	2	0.011039	22046	160513_QHF_FH_JSI11Kac_4	66.435	46.105			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2748100	2748100	0	0	0	0	0	0	0	2748100	2748100	0	0	0	0	3304	5675	3114	20282	27663	27663	3523		1	
ALKYLVMDEADR	1	Acetyl (K)	1464.7283	0.72826518	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.385	66.749	2	1.0244E-06	35515	160513_QHF_FH_JSI11Kac_5	125.22	99.278			0.21799	0.21308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21799	0.21308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1646600	1391400	255170	0	0	0	0	0	0	1646600	1391400	255170	0	0	0	3305	4640	3115	20283	27664	27664	3206		1	
ALLAEATR	0	Unmodified	843.48142	0.48141661	2953	Q5T7N3	KANK4	KN motif and ankyrin repeat domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	27.089	26.55	2	0.0033731	23464	160511_QHF_FH_JSI10i_1	73.039	4.1239			0.82872	0.90393	8.2727	4	0	Median	NaN	NaN	NaN	0	0	Median	0.76557	0.89782	NaN	1	0	Median	0.9171	0.91484	0.73719	2	0	Median	0.6861	0.7714	NaN	1	0	Median	1756600000	966380000	790270000	0	0	0	213190000	123690000	89507000	1082300000	564970000	517320000	461170000	277720000	183450000	3306	2953	3116	20284;20285;20286;20287	27665;27666;27667;27668;27669;27670	27668			6	
ALLAEGVILR	0	Unmodified	1053.6546	0.65462995	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	69.172	68.402	2	0.034945	59155	160511_QHF_FH_JSI12i_3	55.676	26.527			0.57178	0.53782	21.117	4	0	Median	0.62298	0.53213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52478	0.54357	NaN	1	0	Median	0.58129	0.62665	33.195	2	0	Median	127430000	73273000	54153000	23550000	12396000	11153000	0	0	0	35601000	23657000	11944000	68275000	37219000	31056000	3307	5591	3117	20288;20289;20290;20291	27671	27671			0	
ALLAEHLLK	1	Acetyl (Protein N-term)	1048.6281	0.62808085	5150	Q9NZD2	GLTP	Glycolipid transfer protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	87.164	86.513	2	0.00025749	74844	160511_QHF_FH_JSI12i_2	50.607	38.702			0.97309	1.0315	5.4409	4	0	Median	1.1811	1.0363	NaN	1	0	Median	0.78961	0.93042	NaN	1	0	Median	1.0134	1.0459	NaN	1	0	Median	0.93441	1.0268	NaN	1	0	Median	86634000	42750000	43884000	15351000	6516400	8834400	16775000	8722100	8052400	34800000	16505000	18294000	19709000	11006000	8703200	3308	5150	3118	20292;20293;20294;20295	27672;27673;27674;27675;27676	27672			5	
ALLAGGGFSTWTYR	0	Unmodified	1498.7569	0.75686319	3929	Q93063	EXT2	Exostosin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.4	73.759	2	0.046724	40304	160513_QHF_FH_JSI10Kac_6	54.267	38.377			0.48207	0.55785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48207	0.55785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55639000	37982000	17657000	0	0	0	55639000	37982000	17657000	0	0	0	0	0	0	3309	3929	3119	20296	27677	27677			0	
ALLALAK	1	Unmodified	698.46906	0.46906101	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	44.948	44.169	2	0.018633	37425	160511_QHF_FH_JSI12i_3	59.609	16.891			1.1114	1.1761	81.669	5	1	Median	1.4661	1.1975	NaN	1	0	Median	0.93569	1.0815	NaN	1	0	Median	0.48295	0.47623	131.46	2	1	Median	1.1114	1.1761	NaN	1	0	Median	243510000	120630000	122880000	37689000	14477000	23213000	41846000	18091000	23755000	89461000	53447000	36014000	74513000	34613000	39900000	3310	167	3120	20297;20298;20299;20300;20301	27678;27679	27679			2	
ALLALNHGLDK	1	Unmodified	1163.6663	0.66625727	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	46.987	46.182	2;3	5.6595E-10	39260	160511_QHF_FH_JSI12i_3	129.82	95.432			0.93374	0.93074	39.647	9	1	Median	1.2854	1.0601	2.4683	2	0	Median	0.9728	1.1097	71.09	3	1	Plateau	0.94549	0.88962	0.74177	2	0	Median	0.91204	0.92467	0.92565	2	0	Median	1035200000	527570000	507650000	152080000	74168000	77907000	199060000	95290000	103770000	215500000	110670000	104830000	468590000	247440000	221150000	3311	2446	3121	20302;20303;20304;20305;20306;20307;20308;20309;20310	27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690	27688			10	
ALLAMYTNQAEQCR	0	Unmodified	1667.776	0.77596042	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	60.982	56.691	2	0.049285	47544	160511_QHF_FH_JSI10i_3	37.344	25.613			1.1571	1.0995	24.091	7	0	Median	1.3459	1.1225	18.725	2	0	Median	0.93132	1.0547	5.8824	2	0	Median	1.4224	1.3387	22.554	2	0	Median	0.70609	0.72126	NaN	1	0	Median	537410000	271750000	265660000	48286000	15973000	32313000	115910000	65586000	50323000	231090000	101900000	129200000	142120000	88291000	53828000	3312	602	3122	20311;20312;20313;20314;20315;20316;20317	27691;27692;27693;27694	27691			4	
ALLAMYTNQAEQCRK	1	Unmodified	1795.8709	0.87092344	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			52.701	44.102	3	0.0017637	24285	160513_QHF_FH_JSI10Kac_6	58.885	40.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3313	602	3123	20318	27695	27695			1	
ALLANALTSALR	0	Unmodified	1212.719	0.71902112	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		80.419	78.344	2	3.9144E-05	70965	160511_QHF_FH_JSI11i_3	103.26	62.987			0.85229	0.84218	25.937	4	0	Median	0.81632	0.6676	NaN	1	0	Median	0.87535	1.0269	27.508	2	0	Median	0.88985	0.83904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159880000	80583000	79296000	39877000	17840000	22037000	90787000	47345000	43442000	29216000	15399000	13817000	0	0	0	3314	1890	3124	20319;20320;20321;20322	27696;27697;27698;27699;27700;27701	27696			6	
ALLANQDSGEVQQDPK	1	Unmodified	1711.8377	0.83769228	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	32.331	31.689	2;3	1.9624E-09	28359	160511_QHF_FH_JSI11i_1	177.54	143.16			1.1919	0.95566	19.652	7	2	Median	1.3062	1.0828	17.664	2	0	Median	0.81564	0.94996	NaN	1	0	Median	1.0838	1.0375	29.745	2	2	Median	1.0518	1.0683	31.522	2	0	Median	259750000	124150000	135600000	77146000	33540000	43606000	48244000	27533000	20710000	75328000	35294000	40034000	59032000	27781000	31252000	3315	4889	3125	20323;20324;20325;20326;20327;20328;20329	27702;27703;27704;27705;27706;27707;27708	27703			5	
ALLCYNR	0	Acetyl (Protein N-term)	950.46439	0.46438634	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.97	55.314	2	0.0015715	49144	160511_QHF_FH_JSI9i_1	99.511	75.538			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3316	5296	3126	20330;20331;20332;20333	27709;27710;27711;27712	27712			4	
ALLDASETTSTRK	1	Unmodified	1391.7256	0.72562264	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.19		6	8					4		5	5	4	4	25.946	23.044	2;3	1.0261E-07	19656	160511_QHF_FH_JSI11i_3	112.82	101.13			0.94695	0.95923	15.79	16	4	Median	1.2084	1.0493	19.603	3	1	Plateau	0.81319	0.96326	13.72	5	2	Median	0.98753	0.92918	15.551	4	0	Median	0.90253	0.9454	9.7262	4	1	Median	1320000000	681090000	638890000	94786000	48198000	46588000	550460000	283180000	267280000	505770000	251100000	254670000	168960000	98615000	70343000	3317	2525	3127	20334;20335;20336;20337;20338;20339;20340;20341;20342;20343;20344;20345;20346;20347;20348;20349;20350;20351	27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731;27732;27733;27734;27735;27736;27737	27714			23	
ALLDFEDK	1	Unmodified	949.47566	0.47566253	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	55.539	55.003	2	0.0071383	49728	160511_QHF_FH_JSI11i_1	60.436	36.464			1.712	1.7266	18.874	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5357	1.5109	NaN	1	0	Median	1.9085	1.9731	NaN	1	0	Median	189210000	70194000	119010000	0	0	0	0	0	0	115840000	43185000	72654000	73370000	27009000	46361000	3318	2573	3128	20352;20353;20354	27738;27739;27740	27738			3	
ALLDLQGHLDAASR	0	Unmodified	1478.7841	0.78414057	4514	Q9BXF6	RAB11FIP5	Rab11 family-interacting protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.225	58.094	3	4.2836E-05	49937	160511_QHF_FH_JSI12i_3	79.022	58.559			1.0869	1.0653	18.142	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3337	1.2111	NaN	1	0	Median	0.88578	0.93703	NaN	1	0	Median	99147000	45085000	54062000	0	0	0	0	0	0	51963000	21853000	30110000	47184000	23233000	23952000	3319	4514	3129	20355;20356	27741;27742;27743	27743			2	
ALLDNTK	1	Unmodified	773.42832	0.42831841	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.958	15.688	2	0.04193	13319	160511_QHF_FH_JSI12i_1	46.426	7.6341			1.0695	1.237	33.493	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0695	1.237	NaN	1	0	Median	0.6667	0.64635	NaN	1	0	Median	1.0165	1.0319	NaN	1	0	Median	550560000	301270000	249290000	0	0	0	203400000	110220000	93186000	162690000	102700000	59994000	184460000	88354000	96109000	3320	3860	3130	20357;20358;20359	27744;27745;27746	27745			3	
ALLDSLQLGPDSLTVHLIHEVTK	1	Unmodified	2498.3744	0.37443893	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.57		5	6						7	3	5	4	6	97.89	94.672	3;4	1.3186E-74	49095	160513_QHF_FH_JSI10Kac_6	213.16	162.77			1.0641	1.0538	23.498	18	4	Median	1.1017	0.94957	9.1868	3	0	Median	0.82519	1.0172	33.761	5	1	Median	1.0545	1.0239	12.108	4	0	Median	1.1745	1.2001	20.241	6	3	Median	14527000000	7269200000	7258100000	651900000	306190000	345710000	2064300000	1066200000	998180000	2025300000	951820000	1073500000	9785700000	4945000000	4840700000	3321	2569	3131	20360;20361;20362;20363;20364;20365;20366;20367;20368;20369;20370;20371;20372;20373;20374;20375;20376;20377	27747;27748;27749;27750;27751;27752;27753;27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765	27765			19	
ALLEAFGTTGFQATNFGR	0	Unmodified	1899.9479	0.94791144	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		92.209	91.361	2;3	2.889E-23	81460	160511_QHF_FH_JSI11i_3	158.2	127.76			1.0138	1.1787	16.054	5	2	Median	1.6211	1.3493	2.315	2	0	Median	0.97621	1.1229	6.8557	2	1	Median	0.97832	0.92743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76467000	43848000	32620000	29950000	15457000	14493000	22235000	12720000	9514800	24283000	15671000	8611900	0	0	0	3322	1654	3132	20378;20379;20380;20381;20382;20383	27766;27767;27768;27769;27770;27771;27772;27773;27774	27767			9	
ALLEAGALPNAPNSYGR	0	Unmodified	1712.8846	0.8845829	1547	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	5.48	8	4	3					4		3	3	7	6	65.833	63.026	2;3	2.8488E-98	55598	160511_QHF_FH_JSI9i_2	264.68	214.39			0.98683	0.97075	20.828	18	6	Median	1.0896	0.92418	44.391	3	2	Plateau	0.80724	0.94725	11.766	2	0	Median	0.97978	0.97242	8.2225	7	1	Median	0.93464	1.0012	19.316	6	3	Median	1607000000	785580000	821410000	231950000	112710000	119230000	195510000	107150000	88360000	630310000	296390000	333920000	549220000	269330000	279900000	3323	1547	3133	20384;20385;20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400;20401;20402	27775;27776;27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787;27788;27789;27790;27791;27792;27793;27794;27795;27796;27797;27798;27799	27789			25	
ALLEALHR	0	Unmodified	921.5396	0.53960019	4635	Q9H0K6	PUS7L	Pseudouridylate synthase 7 homolog-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			36.95	35.493	3	0.0051937	29554	160511_QHF_FH_JSI10i_3	44.349	26.655			0.88329	0.86665	26.53	2	0	Median	0.88622	0.71841	NaN	1	0	Median	0.88038	1.0455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44730000	25771000	18959000	25897000	14029000	11868000	18832000	11742000	7090400	0	0	0	0	0	0	3324	4635	3134	20403;20404	27800;27801	27800			2	
ALLEEVK	1	Unmodified	800.46437	0.46436956	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.159	32.829	2	0.020418	27832	160511_QHF_FH_JSI12i_2	60.709	18.817			0.62422	0.70984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62422	0.70984	NaN	1	1	Median	51366000	28599000	22767000	0	0	0	0	0	0	0	0	0	51366000	28599000	22767000	3325	4047	3135	20405	27802	27802			1	
ALLEEYNK	1	Unmodified	978.50221	0.50221163	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	32.661	31.479	2	0.0019525	26670	160511_QHF_FH_JSI12i_2	83.753	48.945			1.3986	1.3365	14.997	2	0	Median	1.4225	1.202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.375	1.486	NaN	1	0	Median	122120000	56857000	65259000	64928000	27545000	37384000	0	0	0	0	0	0	57188000	29312000	27876000	3326	586	3136	20406;20407	27803	27803			1	
ALLEFLQR	0	Unmodified	988.57057	0.57056597	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	74.641	73.847	2	9.1874E-05	65812	160511_QHF_FH_JSI11i_3	130.77	81.407			0.87589	0.90184	9.5644	4	0	Median	1.2001	0.99048	NaN	1	0	Median	0.83422	0.97534	NaN	1	0	Median	0.91964	0.83387	NaN	1	0	Median	0.79616	0.83239	NaN	1	0	Median	115160000	58068000	57093000	32816000	13898000	18917000	27749000	16178000	11571000	40478000	20709000	19769000	14119000	7282600	6836400	3327	3515	3137	20408;20409;20410;20411	27804;27805;27806;27807;27808;27809	27805			6	
ALLELLR	0	Unmodified	826.52764	0.52763852	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.885	69.736	2	0.010534	60515	160511_QHF_FH_JSI12i_3	74.415	7.3804			0.96067	0.9401	9.7736	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0618	1.0074	NaN	1	0	Median	0.86917	0.87732	NaN	1	0	Median	142870000	69427000	73446000	0	0	0	0	0	0	56756000	24211000	32545000	86116000	45215000	40901000	3328	4936	3138	20412;20413	27810;27811	27811			2	
ALLELQLEPEELYQTFQR	0	Unmodified	2219.1474	0.1473991	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.84	1	7	4						2	2	3	5	4	100.78	99.641	2;3	9.2166E-160	90776	160511_QHF_FH_JSI11i_3	361.51	325.87			1.0245	1.0706	10.364	14	2	Median	1.3189	1.0933	5.9919	2	0	Median	0.94294	1.0938	9.4357	3	0	Median	1.0458	1.0257	9.8012	5	2	Median	1.1055	1.1742	13.962	4	0	Median	13850000000	6477300000	7372900000	2105200000	911190000	1194000000	2039800000	1048900000	990960000	5474600000	2600600000	2874100000	4230500000	1916600000	2313900000	3329	1033	3139	20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427	27812;27813;27814;27815;27816;27817;27818;27819;27820;27821;27822;27823;27824	27812			12	
ALLELVPWR	0	Unmodified	1095.6441	0.64406526	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	93.298	92.608	2	1.6761E-05	80300	160511_QHF_FH_JSI12i_3	108.46	62.035			0.94482	0.97957	5.7208	3	0	Median	1.1912	0.97957	NaN	1	0	Median	0.91632	1.0666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94482	0.95664	NaN	1	0	Median	88122000	44696000	43426000	21669000	9496000	12173000	24692000	13039000	11653000	0	0	0	41761000	22161000	19600000	3330	5458	3140	20428;20429;20430	27825;27826;27827	27826			3	
ALLEMAEEK	1	Unmodified	1032.5161	0.51614714	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	45.136	44.344	2	7.1337E-06	37872	160511_QHF_FH_JSI12i_2	112.84	68.395			1.1663	1.3017	32.651	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3342	1.3206	46.161	2	2	Median	1.1663	1.3017	NaN	1	0	Median	466660000	227850000	238820000	0	0	0	0	0	0	345580000	168580000	177000000	121080000	59266000	61814000	3331	1493	3141	20431;20432;20433	27828;27829;27830;27831	27828			4	
ALLEPELRPEDR	0	Unmodified	1436.7623	0.7623425	960	P0DPD7			no	no	0	0	0	1			By MS/MS		3	0			1									1		46.531	46.531	3	0.00092599	41094	160511_QHF_FH_JSI11i_3	52.463	32.357			0.44068	0.40787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44068	0.40787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	220760000	146470000	74296000	0	0	0	0	0	0	220760000	146470000	74296000	0	0	0	3332	960	3142	20434	27832	27832			1	
ALLEVLGR	0	Unmodified	869.53345	0.53345218	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	61.443	60.638	2	0.00011034	50810	160511_QHF_FH_JSI10i_3	128.57	55.527			1.0095	1.1317	7.5938	7	0	Median	1.4411	1.1923	5.8102	2	0	Median	0.95562	1.1338	0.25677	2	0	Median	1.0561	1.031	4.1399	2	0	Median	1.0095	1.0159	NaN	1	0	Median	1144700000	581700000	563020000	207620000	91096000	116530000	252030000	137630000	114400000	354110000	192360000	161750000	330950000	160600000	170350000	3333	2764	3143	20435;20436;20437;20438;20439;20440;20441	27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844	27834			12	
ALLEVVQSGGK	1	Unmodified	1099.6237	0.62372375	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.47	3	4	4			1	3	4	4	6	7	5	5	52.934	47.409	2	2.7094E-30	40843	160511_QHF_FH_JSI12i_2	195.7	138.14			0.93125	0.92289	11.922	22	1	Median	1.0255	0.88732	14.194	5	1	Median	0.83132	0.96818	11.779	7	0	Median	0.9165	0.91055	8.7312	5	0	Median	0.98429	1.0837	7.409	5	0	Median	7261400000	3481700000	3779700000	1191200000	563390000	627820000	1405900000	715650000	690240000	2337300000	1167500000	1169800000	2327000000	1035100000	1291800000	3334	209	3144	20442;20443;20444;20445;20446;20447;20448;20449;20450;20451;20452;20453;20454;20455;20456;20457;20458;20459;20460;20461;20462;20463;20464	27845;27846;27847;27848;27849;27850;27851;27852;27853;27854;27855;27856;27857;27858;27859;27860;27861;27862;27863;27864;27865;27866;27867;27868;27869;27870;27871;27872;27873;27874;27875;27876;27877;27878;27879;27880;27881;27882;27883;27884;27885;27886;27887;27888;27889;27890;27891;27892;27893;27894;27895;27896	27853			52	
ALLFIPR	0	Unmodified	828.52216	0.52215921	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.26	3	14	9			2	3	4	7	11	10	9	12	71.231	66.858	1;2	1.0864E-07	35393	160513_QHF_FH_JSI9Kac_6	143.22	29.405			1.0149	1.0206	18.054	42	2	Median	1.2208	1.0293	18.157	11	1	Median	0.85721	0.99657	11.658	10	0	Median	1.0283	1.0068	18.656	9	0	Median	1.0149	1.0509	22.679	12	1	Median	89909000000	40035000000	49874000000	21059000000	8642900000	12416000000	22851000000	11407000000	11444000000	24670000000	10520000000	14150000000	21330000000	9465300000	11864000000	3335	898	3145	20465;20466;20467;20468;20469;20470;20471;20472;20473;20474;20475;20476;20477;20478;20479;20480;20481;20482;20483;20484;20485;20486;20487;20488;20489;20490;20491;20492;20493;20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506	27897;27898;27899;27900;27901;27902;27903;27904;27905;27906;27907;27908;27909;27910;27911;27912;27913;27914;27915;27916;27917;27918;27919;27920;27921;27922;27923;27924;27925;27926;27927;27928;27929;27930;27931;27932;27933;27934;27935;27936;27937;27938;27939;27940;27941;27942;27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953;27954;27955;27956;27957;27958;27959;27960;27961;27962;27963;27964;27965;27966;27967;27968;27969;27970;27971;27972;27973;27974;27975;27976;27977;27978;27979;27980;27981	27969			85	
ALLFNMNQIK	1	Oxidation (M)	1206.6431	0.64307898	5807				yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	76.499	67.854	2	0.0088919	35491	160513_QHF_FH_JSI12Kac_6	54.205	25.996	+		1.018	1.1313	24.894	4	1	Median	NaN	NaN	NaN	0	0	Median	0.94795	1.1117	NaN	1	0	Median	0.7308	0.69235	NaN	1	1	Median	1.0933	1.1512	0	2	0	Median	517040000	244270000	272770000	0	0	0	172660000	84787000	87869000	132420000	73233000	59188000	211960000	86248000	125720000	3336	5807	3146	20507;20508;20509;20510	27982;27983;27984	27983		2754	3	
ALLFSNNTQELHPDPFQTEDPFK	1	Unmodified	2687.2867	0.28674613	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	4	2	93.682	93.407	3	3.9377E-07	83120	160511_QHF_FH_JSI11i_3	78.413	71.837			1.0795	1.1061	20.381	10	10	Median	1.2733	1.0698	24.793	2	2	Median	0.97183	1.1951	15.608	2	2	Median	1.1121	1.0658	26.827	4	4	Median	0.94957	0.99555	19.559	2	2	Median	395200000	192030000	203170000	54452000	26869000	27583000	63102000	29211000	33890000	164320000	81688000	82632000	113330000	54261000	59065000	3337	5230	3147	20511;20512;20513;20514;20515;20516;20517;20518;20519;20520	27985;27986;27987;27988;27989;27990;27991;27992;27993;27994;27995;27996;27997;27998	27986			14	
ALLFVPR	0	Unmodified	814.50651	0.50650915	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.39	3	6	8				3	4	5	5	9	8	7	64.234	59.821	2	1.0864E-07	32809	160513_QHF_FH_JSI11Kac_5	143.22	0			1.0734	1.072	25.673	28	2	Median	1.2738	1.0887	14.774	5	0	Median	0.88385	1.0209	28.911	8	1	Median	1.0973	1.0763	35.216	8	1	Median	1.0528	1.0744	14.068	7	0	Median	57254000000	25280000000	31973000000	12687000000	4554100000	8132500000	12187000000	6464500000	5722800000	15368000000	6667800000	8700200000	17012000000	7594100000	9417600000	3338	880	3148	20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538;20539;20540;20541;20542;20543;20544;20545;20546;20547;20548;20549	27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016;28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035;28036;28037;28038;28039;28040;28041;28042;28043;28044;28045;28046;28047;28048;28049;28050;28051;28052;28053;28054;28055;28056;28057;28058;28059;28060;28061;28062;28063;28064;28065	28044			67	
ALLGGNVR	0	Unmodified	798.47119	0.47118627	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	24.368	23.71	2	0.014896	20087	160511_QHF_FH_JSI11i_3	50.966	2.7241			0.86814	0.85184	10.666	4	1	Median	1.1039	0.889	NaN	1	0	Median	0.72788	0.81623	NaN	1	0	Median	1.0148	0.95281	NaN	1	0	Median	0.74267	0.74473	NaN	1	1	Median	576240000	300900000	275340000	192790000	93018000	99769000	138720000	74107000	64611000	120600000	61237000	59362000	124140000	72540000	51597000	3339	418	3149	20550;20551;20552;20553	28066;28067	28066			2	
ALLGPALK	1	Unmodified	781.50617	0.5061748	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.831	3	3	4							2	4	3	1	44.375	43.631	2	0.0030718	36645	160511_QHF_FH_JSI10i_3	75.311	18.8			1.0989	1.0039	20.284	9	1	Median	1.1759	0.98374	2.5966	2	0	Median	0.81214	0.99536	33.498	3	1	Plateau	1.0661	1.0039	11.314	3	0	Median	1.0989	1.1258	NaN	1	0	Median	868010000	443330000	424670000	152410000	74995000	77411000	214820000	121400000	93420000	301210000	142430000	158790000	199570000	104510000	95058000	3340	1429	3150	20554;20555;20556;20557;20558;20559;20560;20561;20562;20563	28068;28069;28070;28071;28072;28073;28074;28075	28071			8	
ALLGSVK	1	Unmodified	686.43268	0.4326755	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	5.95		2	5					1	2	3	2	3	2	28.821	25.501	2	0.0050968	22242	160511_QHF_FH_JSI10i_2	104.11	48.085			1.0454	1.0144	41.173	10	2	Median	1.1808	0.98832	65.75	3	1	Median	1.2965	1.5761	37.362	2	1	Median	1.0407	1.0221	18.048	3	0	Plateau	0.90877	0.96312	11.022	2	0	Median	1152800000	546130000	606690000	90105000	39777000	50327000	188320000	85371000	102950000	472620000	226410000	246210000	401780000	194570000	207210000	3341	2609	3151	20564;20565;20566;20567;20568;20569;20570;20571;20572;20573	28076;28077;28078;28079;28080;28081;28082;28083;28084;28085	28083			10	
ALLGYADNQCK	1	Unmodified	1251.5918	0.59177169	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4									3	2	2	35.512	34.86	2	3.0283E-07	29627	160511_QHF_FH_JSI11i_2	120.12	90.646			1.0969	1.1839	56.833	6	2	Median	NaN	NaN	NaN	0	0	Median	0.74089	0.87576	70.267	2	1	Median	0.88478	0.87199	15.623	2	0	Median	1.9951	2.1635	3.2711	2	1	Median	232170000	109670000	122500000	0	0	0	69298000	35997000	33301000	92783000	44835000	47948000	70090000	28839000	41251000	3342	4850	3152	20574;20575;20576;20577;20578;20579;20580	28086;28087;28088;28089;28090;28091;28092;28093;28094	28091			9	
ALLHQLESLAK	1	Unmodified	1221.7081	0.70812208	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			4								1	1	2	59.172	58.66	2;3	1.3504E-07	50340	160511_QHF_FH_JSI12i_3	113.63	102.42			1.0149	1.0363	15.839	4	1	Median	NaN	NaN	NaN	0	0	Median	0.83099	0.97409	NaN	1	0	Median	0.96884	0.88341	NaN	1	0	Median	1.1632	1.1851	10.234	2	1	Median	268600000	116130000	152470000	0	0	0	27098000	14793000	12304000	71340000	28770000	42571000	170160000	72567000	97591000	3343	261	3153	20581;20582;20583;20584	28095;28096;28097;28098	28097			4	
ALLHVWAGGPWPQGATLR	0	Unmodified	1929.0373	0.037335565	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			80.83	74.221	2;3	1.6553E-16	41214	160513_QHF_FH_JSI10Kac_6	164.33	149.7			0.86722	1.0259	19.843	3	0	Median	1.4491	1.2158	NaN	1	0	Median	0.78792	0.91645	15.961	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	628220000	311430000	316790000	182000000	78789000	103210000	446220000	232650000	213570000	0	0	0	0	0	0	3344	3146	3154	20585;20586;20587	28099;28100;28101;28102;28103	28103			5	
ALLHYLDFGQK	1	Unmodified	1303.6925	0.69247202	2500	Q14147	DHX34	Probable ATP-dependent RNA helicase DHX34	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	66.873	66.282	3	0.0021856	57134	160511_QHF_FH_JSI12i_3	48.741	44.568			1.4319	1.4396	18.291	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1299	1.2724	NaN	1	0	Median	1.0776	1.0044	NaN	1	1	Median	1.4394	1.4396	NaN	1	0	Median	103600000	43823000	59776000	0	0	0	23000000	10488000	12512000	38277000	18351000	19926000	42322000	14984000	27337000	3345	2500	3155	20588;20589;20590	28104;28105	28105			2	
ALLIFLEK	1	Unmodified	945.5899	0.58990443	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	2	3	1	86.614	84.936	2	0.0012164	74769	160511_QHF_FH_JSI12i_3	92.47	78.313			0.98603	0.9965	35.155	8	0	Median	1.0592	0.89123	29.267	2	0	Median	0.60186	0.71165	57.236	2	0	Median	1.0117	0.986	32.172	3	0	Median	1.0067	1.0071	NaN	1	0	Median	353250000	161790000	191460000	35480000	15679000	19801000	37027000	23058000	13968000	150000000	57791000	92206000	130750000	65265000	65487000	3346	4908	3156	20591;20592;20593;20594;20595;20596;20597;20598	28106;28107;28108;28109;28110;28111;28112;28113;28114	28114			9	
ALLIIVGNPLLLGHDPDWK	1	Unmodified	2083.183	0.18299675	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			93.957	88.237	2;3	5.9271E-57	50711	160513_QHF_FH_JSI10Kac_6	201.44	180.14			0.91601	1.0767	3.9969	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91601	1.0767	3.9969	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	645800000	350080000	295720000	0	0	0	645800000	350080000	295720000	0	0	0	0	0	0	3347	4856	3157	20599;20600	28115;28116;28117	28117			3	
ALLILEGGQK	1	Unmodified	1040.623	0.62299547	470	O75063	FAM20B	Glycosaminoglycan xylosylkinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.8	5.63		1						3		1	1	2		65.433	57.255	2	0.0035553	28805	160513_QHF_FH_JSI10Kac_5	68.224	31.828			0.99665	0.96433	11.163	4	1	Median	1.0403	0.82977	NaN	1	1	Median	0.84357	0.98868	NaN	1	0	Median	1.0245	1.01	10.077	2	0	Median	NaN	NaN	NaN	0	0	Median	52265000	28413000	23852000	2468000	1113900	1354100	3461100	1776700	1684400	46336000	25522000	20814000	0	0	0	3348	470	3158	20601;20602;20603;20604	28118;28119;28120;28121	28121			3	
ALLITYGPYAINGK	1	Unmodified	1492.829	0.8289655	4232	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.39	72.133	2	1.4214E-67	39268	160513_QHF_FH_JSI11Kac_6	224.64	174.52			1.3405	1.2083	34.07	4	0	Median	1.5073	1.3028	NaN	1	0	Median	1.888	2.211	NaN	1	0	Median	1.1921	1.1207	NaN	1	0	Median	0.97816	1.0382	NaN	1	0	Median	365810000	171770000	194040000	74599000	27090000	47509000	173520000	89652000	83869000	78131000	33897000	44234000	39563000	21135000	18428000	3349	4232	3159	20605;20606;20607;20608	28122;28123;28124;28125;28126	28122			5	
ALLKDQQPGTFLLR	1	Unmodified	1598.9144	0.91442646	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				87.799	79.162	3	0.009501	43844	160513_QHF_FH_JSI9Kac_6	55.899	21.131			0.24318	0.20606	NaN	1	1	Median	0.24318	0.20606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124950000	93762000	31187000	124950000	93762000	31187000	0	0	0	0	0	0	0	0	0	3350	1528	3160	20609	28127	28127			1	
ALLKLEK	2	Acetyl (K)	855.54295	0.54295423	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		57.21	46.364	2	0.036757	25504	160513_QHF_FH_JSI11Kac_5	66.073	22.95			0.51178	0.50775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51178	0.50775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4607800	2958200	1649700	0	0	0	0	0	0	4607800	2958200	1649700	0	0	0	3351	2349	3161	20610	28128	28128			1	
ALLLAHKK	2	Acetyl (K)	934.59639	0.59638679	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	37.429	28.109	2	0.039081	14789	160513_QHF_FH_JSI12Kac_6	62.717	49.729			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2645200	2645200	0	0	0	0	0	0	0	1419600	1419600	0	1225600	1225600	0	3352	5447	3162	20611;20612	28129;28130	28130			2	
ALLLAQWAWQEGSVTR	0	Unmodified	1827.9632	0.96316757	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		88.726	83.005	2	4.2964E-23	46975	160513_QHF_FH_JSI10Kac_6	245.69	196.39			1.7775	2.1066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7775	2.1066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71996000	24666000	47330000	0	0	0	71996000	24666000	47330000	0	0	0	0	0	0	3353	2304	3163	20613;20614	28131;28132	28132			2	
ALLLEAK	1	Unmodified	756.47454	0.47454032	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	39.747	38.819	2	0.04276	33220	160511_QHF_FH_JSI12i_2	46.016	1.2945			1.0079	1.0602	8.7725	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99433	1.2273	NaN	1	0	Median	1.0079	1.0602	NaN	1	0	Median	0.95443	1.049	NaN	1	0	Median	95532000	47784000	47748000	0	0	0	28727000	16990000	11736000	39423000	18374000	21049000	27381000	12419000	14962000	3354	5347	3164	20615;20616;20617	28133	28133			1	
ALLLKHSHPSDEK	2	Acetyl (K)	1515.8045	0.80454166	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		32.716	23.391	3	0.0083172	13298	160513_QHF_FH_JSI11Kac_6	51.135	38.969			0.21648	0.21688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21648	0.21688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3085200	2873800	211310	0	0	0	0	0	0	3085200	2873800	211310	0	0	0	3355	820	3165	20618	28134	28134	467		1	
ALLLLCGEDD	0	Unmodified	1117.5325	0.53252548	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	81.799	77.453	2	0.00027948	72934	160511_QHF_FH_JSI12i_1	79.454	73.004			1.113	1.2142	23.819	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1309	1.3319	9.4611	2	0	Median	0.89101	0.84995	1.1719	2	0	Median	1.2416	1.3024	13.539	2	0	Median	204470000	102100000	102370000	0	0	0	67667000	30423000	37244000	48736000	23872000	24865000	88065000	47807000	40258000	3356	916	3166	20619;20620;20621;20622;20623;20624	28135;28136;28137;28138;28139;28140;28141	28137			7	
ALLLLLVGGVDQSPR	0	Unmodified	1549.9192	0.91917749	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	2	4	2	2	94.126	86.858	2;3	1.6814E-32	49702	160513_QHF_FH_JSI10Kac_6	208.56	190.69			1.1002	1.1214	25.952	10	2	Median	1.3296	1.15	6.2894	2	0	Median	0.66889	0.78784	19.13	4	2	Median	1.3874	1.3322	4.8183	2	0	Median	1.1002	1.18	4.4655	2	0	Median	1287200000	667260000	619890000	201030000	96652000	104370000	518280000	308620000	209670000	323410000	142860000	180550000	244440000	119140000	125300000	3357	1411	3167	20625;20626;20627;20628;20629;20630;20631;20632;20633;20634	28142;28143;28144;28145;28146;28147;28148;28149;28150;28151;28152;28153;28154;28155;28156;28157;28158;28159	28156			18	
ALLLLQR	0	Unmodified	825.54362	0.54362294	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		12.8	5.63			1						3	2	1	1		63.72	56.657	2	0.0019641	46422	160511_QHF_FH_JSI9i_3	114.67	0			1.1358	1.0631	13.158	4	0	Median	1.343	1.1325	21.842	2	0	Median	0.86155	1.0517	NaN	1	0	Median	1.1009	1.0745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	87293000	43217000	44076000	48060000	20370000	27690000	27066000	16422000	10644000	12166000	6425400	5740900	0	0	0	3358	5637	3168	20635;20636;20637;20638	28160;28161;28162	28161			3	
ALLLLTK	1	Unmodified	770.52658	0.52657589	1511	P41212	ETV6	Transcription factor ETV6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	59.62	59.025	2	0.013827	52218	160511_QHF_FH_JSI11i_3	68.915	59.165			2.1353	2.0967	30.919	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.3394	1.5387	NaN	1	1	Median	1.7591	1.6291	NaN	1	1	Median	2.592	2.6986	NaN	1	1	Median	42689000	17517000	25172000	0	0	0	11251000	5303500	5947400	13815000	4227800	9586700	17624000	7985600	9638200	3359	1511	3169	20639;20640;20641	28163;28164;28165	28163			3	
ALLLPDYYLVTVMLSGIK	1	Unmodified	2008.1319	0.13187238	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.59		8	6	1					10	6	6	8	5	102.82	99.185	2;3	8.1572E-112	50648	160513_QHF_FH_JSI12Kac_6	248.64	224.66			0.95838	0.96416	21.039	23	3	Median	1.1293	0.97122	29.827	5	1	Median	0.80576	0.91175	10.998	5	0	Plateau	0.92475	0.90769	12.706	8	2	Median	0.97237	1.0679	29.021	5	0	Median	30890000000	15467000000	15423000000	7457700000	3216100000	4241600000	10680000000	5813400000	4866100000	12147000000	6136400000	6010100000	606250000	300990000	305260000	3360	3213	3170	20642;20643;20644;20645;20646;20647;20648;20649;20650;20651;20652;20653;20654;20655;20656;20657;20658;20659;20660;20661;20662;20663;20664;20665;20666	28166;28167;28168;28169;28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181;28182;28183;28184;28185;28186;28187;28188;28189;28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206;28207	28203			42	
ALLLPDYYLVTVMLSGIK	1	Oxidation (M)	2024.1268	0.126787	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	97.593	89.473	2;3	3.4054E-24	50438	160513_QHF_FH_JSI11Kac_6	157.2	125.14			0.80921	0.88765	10.855	9	3	Median	0.90793	0.76513	16.192	2	0	Median	0.74485	0.89267	5.2355	3	3	Median	1.0324	0.96906	1.9075	2	0	Median	0.80718	0.86042	4.4072	2	0	Median	1363400000	714250000	649180000	348170000	174330000	173840000	421430000	241160000	180270000	323360000	154310000	169050000	270470000	144450000	126020000	3361	3213	3170	20667;20668;20669;20670;20671;20672;20673;20674;20675	28208;28209;28210;28211;28212;28213;28214;28215;28216;28217;28218;28219;28220;28221	28208		2215	14	
ALLLQAK	1	Unmodified	755.49052	0.49052473	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	35.66	34.88	2	0.020766	29543	160511_QHF_FH_JSI11i_2	56.89	14.172			0.91747	0.95594	19.337	5	0	Median	1.0916	0.95594	NaN	1	0	Median	0.75786	0.92716	NaN	1	0	Median	0.75151	0.74244	NaN	1	0	Median	1.0012	1.1228	18.239	2	0	Median	225850000	107600000	118250000	30387000	13548000	16839000	44092000	23784000	20308000	46853000	22017000	24836000	104520000	48255000	56263000	3362	3539	3171	20676;20677;20678;20679;20680	28222;28223	28222			2	
ALLLQLR	0	Unmodified	825.54362	0.54362294	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.141	56.141	2	0.02826	49830	160511_QHF_FH_JSI11i_3	53.185	0			0.82122	0.77849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82122	0.77849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24006000	12171000	11834000	0	0	0	0	0	0	24006000	12171000	11834000	0	0	0	3363	3272	3172	20681	28224	28224			1	
ALLLSHQFK	1	Unmodified	1055.6128	0.61276513	2922	Q5SNT2	TMEM201	Transmembrane protein 201	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	41.235	40.412	3	1.8857E-05	33908	160511_QHF_FH_JSI10i_3	95.502	86.543			1.0854	0.92437	13.35	4	0	Linear	1.4401	1.1713	NaN	1	0	Median	1.0895	1.2628	NaN	1	0	Median	1.0813	0.99904	NaN	1	0	Median	0.93261	0.94947	NaN	1	0	Median	473480000	188920000	284560000	111990000	35296000	76693000	69667000	29034000	40633000	113150000	46457000	66695000	178670000	78133000	100540000	3364	2922	3173	20682;20683;20684;20685	28225	28225			1	
ALLLSTYIK	1	Unmodified	1020.6219	0.62193284	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	3	5	3	74.935	70.329	2	1.5653E-10	63606	160511_QHF_FH_JSI11i_3	133.55	116.16			1.1496	1.0519	15.839	8	1	Median	1.2483	1.0471	3.7848	2	0	Median	0.98691	1.1344	13.81	2	0	Median	1.1003	1.0411	13.731	2	1	Median	0.96214	1.0058	34.743	2	0	Median	1183700000	490410000	693300000	207390000	88940000	118450000	340390000	157010000	183380000	282000000	131560000	150440000	353930000	112900000	241030000	3365	726;635	3174	20686;20687;20688;20689;20690;20691;20692;20693;20694;20695;20696;20697;20698;20699	28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245	28227			20	
ALLLTGDFSQAGNK	1	Unmodified	1433.7514	0.75144346	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.92	3	5	2					2		1	3	5	3	65.402	64.737	2	7.2887E-52	55518	160511_QHF_FH_JSI12i_2	215.87	204.72			0.79881	0.83535	57.958	8	6	Median	0.90646	0.79225	NaN	1	0	Median	0.43447	0.52552	81.595	2	2	Median	0.46287	0.44773	33.259	2	2	Median	0.84584	0.97463	36.941	3	2	Median	474010000	304900000	169120000	48724000	22950000	25774000	133580000	96839000	36745000	167130000	119860000	47270000	124580000	65253000	59327000	3366	4684	3175	20700;20701;20702;20703;20704;20705;20706;20707;20708;20709;20710;20711	28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259	28248			14	
ALLNLPGTQTSGEAK	1	Unmodified	1498.7991	0.79912193	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.799	5	4	3							2	2	5	3	57.144	56.537	2	2.1358E-16	51190	160511_QHF_FH_JSI11i_1	117.98	90.646			0.88746	0.87283	33.609	9	6	Median	1.745	1.4889	NaN	1	1	Median	0.5317	0.64117	16.628	2	2	Median	0.96382	0.96163	9.1259	3	2	Plateau	1.1307	1.1455	30.842	3	1	Median	261790000	137880000	123920000	23521000	6795900	16725000	61607000	44296000	17311000	92420000	46955000	45466000	84246000	39830000	44416000	3367	4094	3176	20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723	28260;28261;28262;28263;28264;28265;28266;28267;28268;28269;28270;28271;28272	28263			13	
ALLNVVDNAR	0	Unmodified	1083.6037	0.60365701	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	47.257	46.654	2	0.00028423	41166	160511_QHF_FH_JSI11i_3	98.033	66.099			0.98645	0.94737	16.66	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1208	1.2666	NaN	1	0	Median	0.98645	0.94737	NaN	1	0	Median	0.94384	0.95091	NaN	1	0	Median	368650000	183120000	185530000	0	0	0	40732000	18242000	22490000	177800000	98457000	79343000	150120000	66425000	83695000	3368	3401	3177	20724;20725;20726	28273;28274;28275	28273			0	
ALLPHVLCK	1	Unmodified	1049.6056	0.60557126	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	47.932	47.279	2;3	5.5792E-05	39691	160511_QHF_FH_JSI10i_3	84.498	69.824			0.90153	0.86608	15.819	8	2	Median	0.88244	0.7269	NaN	1	0	Median	0.82204	0.93116	12.251	2	0	Median	0.87135	0.84054	7.3623	3	2	Median	1.0731	1.0878	8.3818	2	0	Median	1285900000	658390000	627520000	98805000	55763000	43042000	151090000	84575000	66514000	561030000	306190000	254840000	474980000	211850000	263130000	3369	2785	3178	20727;20728;20729;20730;20731;20732;20733;20734;20735	28276;28277;28278;28279;28280;28281;28282;28283;28284;28285	28278			10	
ALLPILQWHK	1	Unmodified	1217.7285	0.72846359	5181	Q9P0J1	PDP1	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.766	83.098	3	1.6837E-05	73821	160511_QHF_FH_JSI11i_3	88.948	41.75			0.98891	0.94389	14.57	4	0	Median	1.2147	0.98629	NaN	1	0	Median	0.6408	0.7183	NaN	1	0	Median	1.0243	0.93263	NaN	1	0	Median	0.95478	0.95528	NaN	1	0	Median	134790000	67665000	67128000	26492000	13473000	13019000	22592000	12657000	9934800	32539000	15252000	17287000	53170000	26283000	26887000	3370	5181	3179	20736;20737;20738;20739	28286;28287;28288;28289;28290;28291;28292;28293;28294;28295	28287			10	
ALLPSMIK	1	Unmodified	871.52011	0.5201103	3052	Q6IAN0	DHRS7B	Dehydrogenase/reductase SDR family member 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	59.764	58.891	2	0.0023873	50416	160511_QHF_FH_JSI12i_3	88.942	60.43			1.1183	1.1037	7.1565	8	4	Median	1.2427	1.0447	3.7194	2	1	Median	1.0248	1.2177	7.4654	2	0	Median	1.1947	1.1521	4.6247	2	2	Median	1.0018	1.0892	0.41814	2	1	Median	528500000	260550000	267940000	92659000	45015000	47644000	113400000	54897000	58504000	140220000	67900000	72316000	182220000	92741000	89481000	3371	3052	3180	20740;20741;20742;20743;20744;20745;20746;20747	28296;28297;28298;28299;28300;28301;28302;28303	28303			8	
ALLPVLAK	1	Unmodified	823.55312	0.55312499	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	63.802	63.205	2	0.0028682	54414	160511_QHF_FH_JSI12i_3	76.847	52.874			1.072	1.0803	12.61	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1511	1.3157	NaN	1	0	Median	1.084	1.0404	NaN	1	0	Median	1.072	1.0803	NaN	1	0	Median	169070000	78390000	90676000	0	0	0	32065000	14755000	17311000	54487000	24929000	29558000	82514000	38706000	43807000	3372	477	3181	20748;20749;20750;20751	28304;28305;28306;28307	28307			4	
ALLPWLLEQR	0	Unmodified	1237.7183	0.71829284	3476	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			98.538	98.239	2	0.0025458	79574	160511_QHF_FH_JSI9i_3	62.2	41.871			0.9199	0.91688	13.469	2	0	Median	0.97304	0.83359	NaN	1	0	Median	0.86966	1.0085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20091000	11319000	8771800	7199100	3707700	3491400	12892000	7611400	5280400	0	0	0	0	0	0	3373	3476	3182	20752;20753;20754	28308;28309	28309			1	
ALLQAILQTEDMLK	1	Oxidation (M)	1601.8698	0.86984403	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	3	1		98.131	97.938	2	0.00013253	81245	160511_QHF_FH_JSI10i_3	139.86	105.9			0.97193	0.9787	36.017	4	3	Median	0.99754	0.86609	NaN	1	1	Median	1.0852	1.2623	18.706	2	2	Median	0.65518	0.61823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82581000	45049000	37532000	10561000	3319100	7241700	49690000	26338000	23352000	22330000	15392000	6938200	0	0	0	3374	1085	3183	20755;20756;20757;20758;20759;20760	28310;28311;28312;28313;28314;28315	28312		729	6	
ALLQAILQTEDMLK	1	Unmodified	1585.8749	0.87492941	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.58		6	5						3	3	4	3	4	101	100.39	2	9.2147E-199	88392	160511_QHF_FH_JSI12i_3	301.6	263.3			0.88408	0.91883	27.874	11	3	Median	0.95512	0.7991	16.395	2	0	Median	0.99289	1.1643	30.377	4	0	Median	1.0681	1.0382	21.923	2	1	Median	0.72379	0.80708	13.843	3	2	Median	3531000000	1690800000	1840200000	352780000	188930000	163850000	759520000	393080000	366430000	1003000000	487760000	515190000	1415800000	621040000	794720000	3375	1085	3183	20761;20762;20763;20764;20765;20766;20767;20768;20769;20770;20771;20772;20773;20774	28316;28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327;28328;28329;28330;28331;28332;28333	28332			18	
ALLQAKASGK	2	Acetyl (K)	1027.6026	0.60259438	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	37.357	27.715	2	0.00030463	16616	160513_QHF_FH_JSI12Kac_4	94.692	40.142			0.83708	0.94108	10.495	6	0	Median	NaN	NaN	NaN	0	0	Median	0.83098	0.99172	2.6492	2	0	Median	0.83331	0.81439	10.388	2	0	Median	0.85964	0.94108	4.4049	2	0	Median	55980000	29702000	26278000	0	0	0	18498000	9392700	9105500	21296000	12855000	8441300	16186000	7454700	8730800	3376	2409	3184	20775;20776;20777;20778;20779;20780	28334;28335;28336;28337;28338;28339	28335	2472		6	
ALLQEFDNAVLSK	1	Unmodified	1446.7718	0.77184455	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.293	81.532	2	9.448E-08	71674	160511_QHF_FH_JSI11i_2	140.07	114.64			1.2202	2.135	39.159	4	2	Linear	1.291	1.105	NaN	1	1	Median	2.0475	2.4788	NaN	1	0	Median	1.1534	1.2162	NaN	1	0	Median	1.0298	1.0994	NaN	1	1	Median	138090000	55012000	83080000	20511000	7771600	12740000	53619000	17581000	36038000	37866000	15731000	22134000	26096000	13928000	12168000	3377	2186	3185	20781;20782;20783;20784	28340;28341;28342;28343	28342			3	
ALLQEMPLTALLR	0	Unmodified	1467.8483	0.84832073	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	101.69	101.62	2	3.5001E-05	84196	160511_QHF_FH_JSI10i_3	116.74	63.947			0.90471	0.96903	17.544	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75417	0.85597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0853	1.097	NaN	1	0	Median	825370000	408770000	416600000	0	0	0	163010000	100740000	62274000	0	0	0	662350000	308030000	354320000	3378	962	3186	20785;20786	28344;28345	28344			2	
ALLQEQFR	0	Unmodified	1003.5451	0.5450795	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.67	0.471		1	2								1	1	1	41.113	41.008	2	0.0030879	36166	160511_QHF_FH_JSI11i_3	75.189	30.795			1.2332	1.2099	3.4581	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3148	1.2398	NaN	1	0	Median	1.1567	1.1806	NaN	1	0	Median	102950000	42457000	60490000	0	0	0	0	0	0	43098000	18075000	25022000	59849000	24381000	35467000	3379	5014	3187	20787;20788;20789	28346;28347	28346			2	
ALLQHKNAEYQR	1	Acetyl (K)	1511.7845	0.78447492	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									4		1	2	1	33.625	24.626	2;3	0.00073264	13887	160513_QHF_FH_JSI11Kac_6	87.913	70.888			0.77887	0.88948	63.077	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1679	1.3837	NaN	1	0	Median	0.4208	0.39873	NaN	1	0	Median	0.77887	0.88948	NaN	1	0	Median	22157000	13835000	8322100	0	0	0	7865700	3482900	4382800	11619000	8776900	2842000	2672000	1574700	1097300	3380	475	3188	20790;20791;20792;20793	28348;28349	28348	243		2	
ALLQKNVECAR	1	Acetyl (K)	1342.7027	0.70271913	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		50.26	39.77	2	4.3668E-05	23334	160513_QHF_FH_JSI11Kac_4	101.38	51.963			0.59448	0.64084	97.213	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0896	1.2743	NaN	1	0	Median	0.32434	0.32227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10358000	7232000	3125600	0	0	0	2206900	869320	1337600	8150700	6362700	1788000	0	0	0	3381	4873	3189	20794;20795	28350	28350	3254		1	
ALLQMAEEK	1	Unmodified	1031.5321	0.53213155	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.454	41.486	2	3.157E-05	36517	160511_QHF_FH_JSI10i_2	101.72	67.718			1.3519	1.4224	5.6815	4	1	Median	1.6902	1.4395	NaN	1	0	Median	1.0609	1.2764	NaN	1	0	Median	1.4031	1.4109	NaN	1	1	Median	1.3026	1.4339	NaN	1	0	Median	339190000	153750000	185450000	66635000	28387000	38249000	75040000	33424000	41616000	122390000	63667000	58719000	75131000	28269000	46862000	3382	5011	3190	20796;20797;20798;20799	28351;28352;28353;28354	28354			2	
ALLQMVQQFGVDFEK	1	Unmodified	1751.8916	0.89164211	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.53	101.54	3	4.4659E-08	88210	160511_QHF_FH_JSI12i_3	93.243	83.713			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3383	1711	3191	20800	28355	28355			1	
ALLQQQPEDDSK	1	Unmodified	1370.6678	0.66777341	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	27.936	23.958	2	3.9844E-54	21281	160511_QHF_FH_JSI12i_1	224.64	206.82			0.99093	1.0047	17.338	7	0	Median	1.2195	1.0047	NaN	1	0	Median	0.71828	0.84353	27.023	2	0	Median	1.0666	1.0489	10.822	2	0	Median	0.93604	1.0027	20.247	2	0	Median	911140000	449390000	461750000	188310000	87702000	100610000	246020000	136780000	109240000	253330000	107670000	145650000	223480000	117230000	106250000	3384	5295	3192	20801;20802;20803;20804;20805;20806;20807	28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366;28367	28359			12	
ALLQSSASR	0	Unmodified	931.50869	0.50869399	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.55	3	4	4				3	4	4	5	6	6	5	18.08	13.593	2	3.9379E-17	8663	160513_QHF_FH_JSI11Kac_5	173.23	70.515			0.87545	0.9022	18.572	22	3	Median	1.284	1.0955	38.117	5	1	Median	0.71935	0.86002	6.851	6	1	Median	0.88271	0.87361	8.6864	6	1	Median	0.8866	0.9683	9.3996	5	0	Median	7034000000	3646100000	3388000000	1940000000	825540000	1114400000	1786100000	1011300000	774860000	2101500000	1178800000	922700000	1206400000	630470000	575960000	3385	5475	3193	20808;20809;20810;20811;20812;20813;20814;20815;20816;20817;20818;20819;20820;20821;20822;20823;20824;20825;20826;20827;20828;20829	28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391;28392;28393;28394;28395;28396;28397;28398;28399;28400;28401	28392			34	
ALLQSSASRK	1	Unmodified	1059.6037	0.60365701	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			13.909	6.8696	3	0.0086339	5251	160513_QHF_FH_JSI10Kac_6	32.329	23.325			1.2212	1.2221	5.761	2	1	Median	1.4086	1.1733	NaN	1	1	Median	1.0588	1.2729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13664000	6363700	7300200	6907100	3006900	3900300	6756800	3356800	3400000	0	0	0	0	0	0	3386	5475	3194	20830;20831	28402;28403	28403			2	
ALLQTHPEAQR	0	Unmodified	1262.6731	0.67313356	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	2	3	5	3	22.63	17.642	2;3	8.1878E-59	14566	160511_QHF_FH_JSI10i_3	213.31	113.12			0.93823	1.0275	16.28	7	1	Median	1.1511	0.9567	33.954	2	1	Median	0.85712	0.99726	9.1545	2	0	Median	0.96852	0.93313	13.622	2	0	Median	1.0006	1.0843	NaN	1	0	Median	2436000000	1332900000	1103100000	165440000	87959000	77485000	811100000	456850000	354250000	1447500000	782260000	665250000	11935000	5839700	6094900	3387	4010	3195	20832;20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844	28404;28405;28406;28407;28408;28409;28410;28411;28412;28413;28414;28415;28416;28417;28418;28419	28407			16	
ALLQTMASK	1	Unmodified	961.52665	0.52665224	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	34.135	34.135	2	0.00015637	28964	160511_QHF_FH_JSI12i_3	93.429	56.408			1.334	1.2541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.334	1.2541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142840000	57386000	85459000	0	0	0	0	0	0	142840000	57386000	85459000	0	0	0	3388	3274	3196	20845;20846;20847	28420;28421;28422	28421			3	
ALLSALHWLLR	0	Unmodified	1291.7765	0.77647642	529	O75448	MED24	Mediator of RNA polymerase II transcription subunit 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	89.927	81.794	2;3	1.3174E-46	46882	160513_QHF_FH_JSI10Kac_6	204.5	175.77			1.0453	0.92477	31.614	7	2	Median	1.0884	0.92872	2.8873	2	1	Median	0.73497	0.87379	8.0197	2	0	Median	1.0696	1.0375	1.2247	2	1	Median	0.41392	0.4202	NaN	1	0	Median	2052600000	1073400000	979180000	290430000	119270000	171160000	1654200000	885070000	769130000	88201000	53774000	34427000	19782000	15316000	4466000	3389	529	3197	20848;20849;20850;20851;20852;20853;20854;20855	28423;28424;28425;28426;28427;28428;28429;28430	28428			8	
ALLSAPWYLNR	0	Unmodified	1302.7085	0.70845643	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			80.872	79.542	2	0.00025979	65427	160511_QHF_FH_JSI9i_3	78.334	73.722			0.90119	0.85953	16.853	2	0	Median	1.1913	0.96832	NaN	1	0	Median	0.68174	0.76297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66970000	34615000	32356000	26807000	12271000	14537000	40163000	22344000	17819000	0	0	0	0	0	0	3390	860	3198	20856;20857	28431	28431			1	
ALLSAVTR	0	Unmodified	829.50215	0.50215205	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	34.85	34.061	2	0.0030213	29686	160511_QHF_FH_JSI11i_3	75.692	18.229			0.94443	0.92901	20.341	5	0	Median	1.1982	0.96996	NaN	1	0	Median	0.96439	1.1556	30.871	2	0	Median	0.94443	0.89461	NaN	1	0	Median	0.86925	0.88421	NaN	1	0	Median	1163800000	604030000	559780000	399750000	183860000	215890000	331870000	174040000	157830000	253740000	145090000	108650000	178460000	101050000	77408000	3391	1421;1272	3199	20858;20859;20860;20861;20862	28432;28433;28434;28435;28436;28437;28438;28439	28433			8	
ALLSDMVR	0	Unmodified	903.48479	0.48478743	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		49.41	48.777	2	0.002353	43087	160511_QHF_FH_JSI10i_2	89.296	24.538			1.1349	1.2095	99.402	4	2	Median	1.4698	1.258	NaN	1	0	Median	0.98907	1.2078	NaN	1	1	Median	0.46696	0.45095	139.72	2	1	Median	NaN	NaN	NaN	0	0	Median	433410000	216880000	216520000	118930000	41979000	76948000	128020000	60393000	67622000	186460000	114510000	71955000	0	0	0	3392	203	3200	20863;20864;20865;20866	28440;28441;28442;28443	28443			4	
ALLSGYFMQIAR	0	Unmodified	1368.7224	0.72239194	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		84.882	77.409	2	9.9626E-10	43746	160513_QHF_FH_JSI10Kac_6	150.81	102.02			2.1103	2.291	13.828	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0921	2.5263	NaN	1	1	Median	2.1287	2.0776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	371880000	110980000	260910000	0	0	0	278960000	85639000	193320000	92924000	25337000	67587000	0	0	0	3393	3236	3201	20867;20868	28444;28445	28445			2	
ALLSHDSGSDHLAFVR	0	Unmodified	1723.8642	0.86418181	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	49.366	48.049	2;3;4	3.1563E-06	39481	160511_QHF_FH_JSI9i_3	118.16	107.38			1.2454	1.2624	19.289	5	2	Median	1.3224	1.0872	21.126	2	1	Median	1.0816	1.2944	25.88	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2454	1.3007	NaN	1	1	Median	333740000	172130000	161610000	132570000	65902000	66670000	143220000	77213000	66011000	0	0	0	57946000	29019000	28927000	3394	3221	3202	20869;20870;20871;20872;20873;20874	28446;28447;28448;28449;28450;28451;28452	28450			7	
ALLSLNK	1	Unmodified	757.46979	0.46978929	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.772	39.576	2	0.049808	33755	160511_QHF_FH_JSI12i_3	42.914	7.4207			0.99473	1.0049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99473	1.0049	NaN	1	0	Median	33253000	15612000	17640000	0	0	0	0	0	0	0	0	0	33253000	15612000	17640000	3395	2434	3203	20875	28453	28453			1	
ALLSVHDTVAQK	1	Unmodified	1280.7089	0.70885036	2942	Q5T2T1	MPP7	MAGUK p55 subfamily member 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	34.693	34.608	2;3	4.6827E-11	29319	160511_QHF_FH_JSI12i_3	150.61	113.13			1.1288	1.139	5.5343	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3266	1.2577	NaN	1	1	Median	1.1613	1.143	0.4885	2	0	Median	205080000	93095000	111980000	0	0	0	0	0	0	24121000	10860000	13261000	180960000	82235000	98720000	3396	2942	3204	20876;20877;20878	28454;28455;28456;28457	28456			4	
ALLSYDGLNQR	0	Unmodified	1248.6463	0.64625011	5418	Q9UM22	EPDR1	Mammalian ependymin-related protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	53.4	52.541	2	0.00024695	44910	160511_QHF_FH_JSI12i_2	78.934	60.154			0.85522	0.84687	23.357	6	4	Median	1.1346	0.97495	11.671	2	2	Median	0.99023	1.2318	NaN	1	0	Median	0.69307	0.72348	NaN	1	1	Median	0.69097	0.72952	12.848	2	1	Median	195080000	102030000	93046000	53715000	24921000	28794000	30321000	12691000	17629000	39706000	26369000	13338000	71338000	38054000	33285000	3397	5418	3205	20879;20880;20881;20882;20883;20884	28458;28459;28460;28461;28462;28463	28458			6	
ALLTFYHVTK	1	Unmodified	1191.6652	0.66519463	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	4	4	4	3	60.319	55.643	2;3	6.051E-12	30534	160513_QHF_FH_JSI11Kac_6	168.8	127.37			0.93866	0.92323	14.67	15	0	Median	1.1077	0.92284	8.5755	4	0	Median	0.78978	0.93918	4.1074	4	0	Median	1.0286	0.98782	26.563	4	0	Median	0.8867	0.88636	16.186	3	0	Median	4522600000	2260100000	2262500000	1073500000	462050000	611500000	921330000	520890000	400440000	1258200000	548990000	709220000	1269500000	728200000	541300000	3398	5323	3206	20885;20886;20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899	28464;28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492	28473			28	
ALLTLADGR	0	Unmodified	928.53418	0.53418046	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		47.036	47.036	2	0.00055425	41643	160511_QHF_FH_JSI11i_3	78.516	48.331			1.0791	0.99819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0791	0.99819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	87456000	39912000	47544000	0	0	0	0	0	0	87456000	39912000	47544000	0	0	0	3399	1018	3207	20900;20901	28493;28494;28495	28494			3	
ALLTPVAIAAGR	0	Unmodified	1151.7026	0.70264277	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.547	66.731	2	1.0527E-05	55844	160511_QHF_FH_JSI10i_3	104.01	80.585			0.67293	0.69068	19.918	4	1	Median	1.0828	0.87252	NaN	1	0	Median	0.71131	0.79817	NaN	1	0	Median	0.63661	0.59767	NaN	1	1	Median	0.57166	0.59137	NaN	1	0	Median	614920000	341520000	273400000	192160000	91074000	101080000	132370000	73749000	58626000	145660000	86508000	59148000	144730000	90185000	54548000	3400	765	3208	20902;20903;20904;20905	28496;28497;28498;28499;28500;28501	28497			6	
ALLVHDLQK	1	Unmodified	1035.6077	0.60767975	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	3	2	33.785	33.235	2;3	4.631E-06	28856	160511_QHF_FH_JSI11i_3	107.15	88.409			0.85089	0.84794	30.416	8	2	Median	0.56791	0.46813	NaN	1	1	Median	0.79222	0.92058	29.723	2	0	Median	1.1125	1.0335	15.278	3	1	Median	0.78449	0.78997	0.24856	2	0	Median	513710000	277980000	235730000	21941000	12832000	9109500	91711000	50005000	41706000	184440000	88678000	95767000	215610000	126460000	89146000	3401	3838	3209	20906;20907;20908;20909;20910;20911;20912;20913;20914;20915	28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514	28502			12	
ALLVQVVNK	1	Unmodified	982.61752	0.61751616	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	5.91			3					4	1	2	2	2	2	57.968	50.956	2	5.5543E-08	43545	160511_QHF_FH_JSI12i_3	143	84.81			1.1295	1.1104	47.588	8	0	Median	1.3398	1.1114	3.0135	2	0	Median	0.88832	1.0376	12.471	2	0	Median	1.098	1.061	16.914	2	0	Median	1.965	2.0624	94.26	2	0	Median	323660000	146890000	176760000	67993000	23961000	44033000	77568000	46349000	31219000	29532000	11987000	17545000	148560000	64597000	83966000	3402	2213	3210	20916;20917;20918;20919;20920;20921;20922;20923	28515;28516;28517;28518;28519;28520;28521;28522	28522			6	
ALLVSANQTLK	1	Unmodified	1156.6816	0.68157298	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	47.896	46.992	2	0.00016752	40368	160511_QHF_FH_JSI12i_3	82.645	10.953			0.96966	1.0529	19.048	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80483	0.92022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1683	1.2047	NaN	1	0	Median	418620000	182880000	235740000	0	0	0	377560000	166900000	210670000	0	0	0	41061000	15984000	25077000	3403	3331	3211	20924;20925	28523;28524	28524			2	
ALLVTASQCQQPAENK	1	Unmodified	1756.8778	0.87778296	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	39.233	37.2	2	1.7398E-290	33477	160511_QHF_FH_JSI11i_1	376.63	342.67			1.038	1.1218	28.465	8	2	Median	1.5057	1.2719	54.079	2	1	Median	0.87494	1.0287	19.307	2	0	Median	1.0193	1.0106	7.708	2	0	Median	1.3493	1.4752	18.668	2	1	Median	513230000	244950000	268280000	46025000	13714000	32311000	151750000	77392000	74359000	167520000	86643000	80878000	147930000	67195000	80736000	3404	2169	3212	20926;20927;20928;20929;20930;20931;20932;20933;20934	28525;28526;28527;28528;28529;28530;28531;28532;28533;28534;28535;28536	28526			12	
ALLYFIHVMDHIAVK	1	Unmodified	1768.9698	0.96983285	5109	Q9NXN4	GDAP2	Ganglioside-induced differentiation-associated protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		88.326	79.338	4	1.2791E-16	44413	160513_QHF_FH_JSI11Kac_6	184.21	164.53			2.9715	2.5709	NaN	1	1	Median	2.9715	2.5709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85040000	13099000	71942000	46178000	13099000	33080000	0	0	0	38862000	0	38862000	0	0	0	3405	5109	3213	20935;20936	28537;28538	28537			2	
ALLYLCGGDD	0	Unmodified	1095.4907	0.49066067	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	8				4	4				2	4	4	6	72.465	68.885	1;2	5.1368E-10	62948	160511_QHF_FH_JSI10i_1	150.02	147.18			0.97528	0.99958	32.852	13	2	Median	1.0187	0.85557	4.3281	2	1	Median	0.90003	1.0572	14.64	4	0	Median	0.84736	0.82174	17.616	3	0	Plateau	1.1316	1.197	35.5	4	1	Median	919020000	466490000	452530000	98512000	46867000	51645000	333510000	166560000	166950000	248020000	129930000	118090000	238980000	123140000	115850000	3406	870	3214	20937;20938;20939;20940;20941;20942;20943;20944;20945;20946;20947;20948;20949;20950;20951;20952	28539;28540;28541;28542;28543;28544;28545;28546;28547;28548;28549;28550;28551;28552;28553;28554;28555;28556;28557	28549			19	
ALMAPNLDSFGR	0	Unmodified	1290.6391	0.63905624	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	70.291	69.419	2	0.0012499	61662	160511_QHF_FH_JSI10i_2	66.435	27.286			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3407	5656	3215	20953;20954;20955;20956	28558;28559;28560;28561	28560			4	
ALMASMAR	0	Unmodified	849.42008	0.42007868	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		35.554	26.147	2	0.043394	14643	160513_QHF_FH_JSI11Kac_6	44.767	18.288			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3408	5436	3216	20957	28562	28562			1	
ALMDEVVK	1	Unmodified	903.47355	0.47355404	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.87	6	4	5			2	3	3		5	6	5	7	45.463	41.111	1;2	4.6983E-05	37601	160511_QHF_FH_JSI12i_1	136.11	94.611			0.9452	0.98093	30.73	19	0	Median	1.2122	1.01	61.303	5	0	Median	0.83546	0.98093	9.7114	5	0	Median	1.0163	0.98989	6.1172	4	0	Median	0.9078	0.96943	5.8509	5	0	Median	32240000000	15620000000	16620000000	7197300000	3011300000	4186000000	7924700000	4007500000	3917200000	9621200000	4909800000	4711400000	7496800000	3690800000	3806000000	3409	775	3217	20958;20959;20960;20961;20962;20963;20964;20965;20966;20967;20968;20969;20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980	28563;28564;28565;28566;28567;28568;28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584;28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607	28575			44	
ALMDEVVK	1	Oxidation (M)	919.46847	0.46846866	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	5.83	3	3				6	2			2	3	4	5	28.309	22.996	2	0.0064385	19944	160511_QHF_FH_JSI10i_2	69.198	43.304			0.81368	0.89311	23.933	14	2	Median	0.60275	0.50843	15.072	2	1	Median	0.77551	0.93699	3.5612	3	0	Median	0.88893	0.87998	21.664	4	1	Median	0.83847	0.89437	8.8163	5	0	Median	1119700000	547490000	572180000	234930000	104000000	130930000	75982000	44135000	31847000	355000000	173500000	181500000	453760000	225850000	227910000	3410	775	3217	20981;20982;20983;20984;20985;20986;20987;20988;20989;20990;20991;20992;20993;20994	28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618	28618		284	11	
ALMDEVVKATSR	1	Acetyl (K)	1360.7021	0.70205043	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			2	1	1	71.058	60.383	2	5.4154E-14	32411	160513_QHF_FH_JSI10Kac_4	133.07	107.13			0.84801	0.96257	76.222	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2652	1.4946	5.6421	2	0	Median	0.30812	0.30756	NaN	1	0	Median	0.5924	0.64516	NaN	1	0	Median	35454000	20024000	15431000	0	0	0	18199000	8120500	10079000	7640600	5837600	1803000	9614200	6065500	3548800	3411	775	3218	20995;20996;20997;20998	28619;28620;28621;28622;28623;28624;28625	28619	389		7	
ALMDEVVKATSR	1	Acetyl (K);Oxidation (M)	1376.697	0.69696505	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14	0.632						1	3	1			1	1	3	50.493	40.359	2	0.0076376	22264	160513_QHF_FH_JSI12Kac_3	51.445	29.982			0.76671	0.87381	57.76	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1129	1.3146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52821	0.58082	NaN	1	0	Median	10832000	7887500	2944400	0	0	0	3740900	1567500	2173400	2660400	2660400	0	4430500	3659500	770950	3412	775	3218	20999;21000;21001;21002;21003	28626;28627;28628;28629;28630	28627	389	284	4	
ALMDLLQLTR	0	Unmodified	1172.6587	0.65872905	2577	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	94.843	94.399	2	2.6868E-07	84146	160511_QHF_FH_JSI11i_3	113.62	77.227			1.0824	1.0901	7.8778	4	0	Median	1.35	1.1167	NaN	1	0	Median	0.8225	0.95014	NaN	1	0	Median	1.1784	1.1286	NaN	1	0	Median	0.99422	1.0642	NaN	1	0	Median	177940000	89043000	88902000	28256000	11131000	17125000	37021000	19026000	17995000	64711000	31345000	33366000	47957000	27541000	20415000	3413	2577	3219	21004;21005;21006;21007	28631;28632;28633;28634;28635;28636;28637	28632			7	
ALMDSLGPEWR	0	Unmodified	1273.6125	0.61250714	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	68.695	67.931	2	1.4946E-13	58780	160511_QHF_FH_JSI12i_3	152.86	134.55			1.0079	1.1291	6.1539	7	0	Median	1.3533	1.142	NaN	1	0	Median	0.92083	1.112	4.9473	2	0	Median	1.1132	1.0797	11.017	2	0	Median	1.0219	1.075	6.9486	2	0	Median	679440000	323580000	355860000	75847000	29027000	46821000	198620000	107420000	91195000	227060000	104260000	122800000	177920000	82870000	95047000	3414	2707	3220	21008;21009;21010;21011;21012;21013;21014	28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649	28648			11	
ALMGLYHGQVLCK	1	Unmodified	1488.7581	0.75812552	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			10						5	3	5	4	3	57.239	54.613	2;3	3.3997E-23	46717	160511_QHF_FH_JSI12i_3	158.05	147.99			1.3556	1.3032	56.206	10	5	Median	1.4081	1.1438	25.032	3	2	Median	1.305	1.5296	45.657	3	1	Median	0.85428	0.8202	33.065	2	1	Median	2.6676	2.7099	80.488	2	1	Median	1553600000	711520000	842120000	228620000	102610000	126000000	367750000	167520000	200230000	413090000	231460000	181630000	544180000	209930000	334250000	3415	1507	3221	21015;21016;21017;21018;21019;21020;21021;21022;21023;21024;21025;21026;21027;21028;21029	28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665	28661			14	
ALMGLYHGQVLCK	1	Oxidation (M)	1504.753	0.75304014	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			46.659	45.096	3	0.0071589	37688	160511_QHF_FH_JSI10i_3	41.242	36.088			0.78531	0.92011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78531	0.92011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25590000	12716000	12875000	0	0	0	25590000	12716000	12875000	0	0	0	0	0	0	3416	1507	3221	21030	28666;28667	28667		1185	2	
ALMGSPQLVAAVVR	0	Oxidation (M)	1426.7966	0.79661951	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.94			4					3		1	2	2	2	70.401	65.58	2	4.8162E-07	34638	160513_QHF_FH_JSI11Kac_5	110.38	82.369			1.0224	0.97085	17.003	7	3	Median	1.1245	0.94541	NaN	1	0	Median	0.71042	0.82896	22.345	2	1	Median	1.1858	1.1416	0.37917	2	0	Median	0.95613	0.95828	14.26	2	2	Median	150900000	79409000	71495000	3979400	1829200	2150300	28084000	16195000	11890000	27916000	13421000	14495000	90924000	47964000	42960000	3417	1065	3222	21031;21032;21033;21034;21035;21036;21037	28668;28669;28670;28671;28672;28673;28674	28672		705	7	
ALMGSPQLVAAVVR	0	Unmodified	1410.8017	0.80170489	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	78.923	78.142	2	7.5666E-40	65575	160511_QHF_FH_JSI10i_3	199.08	161.88			0.84922	0.79042	18.306	8	0	Median	1.0845	0.90865	20.92	2	0	Median	0.74156	0.88034	22.403	2	0	Median	0.88846	0.8667	15.966	2	0	Median	0.66923	0.70204	17.974	2	0	Median	875010000	474990000	400010000	177460000	84742000	92715000	196090000	109030000	87069000	244090000	127970000	116120000	257360000	153250000	104110000	3418	1065	3222	21038;21039;21040;21041;21042;21043;21044;21045	28675;28676;28677;28678;28679;28680;28681;28682	28678			8	
ALMLAMGYHEK	1	Unmodified	1262.6151	0.61514967	5653	Q9Y5A7	NUB1	NEDD8 ultimate buster 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	1	3		57.367	48.23	2;3	5.0229E-06	26278	160513_QHF_FH_JSI11Kac_6	102.61	83.338			1.0354	0.84745	9.194	3	0	Plateau	1.0754	0.93989	NaN	1	0	Median	0.70156	0.84035	NaN	1	0	Median	1.0354	1.0084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110940000	56624000	54317000	36833000	20885000	15948000	42766000	22998000	19768000	31343000	12742000	18601000	0	0	0	3419	5653	3223	21046;21047;21048;21049;21050	28683;28684;28685;28686;28687;28688	28686			6	
ALMLELK	1	Unmodified	816.47791	0.47791114	3204	Q712K3	UBE2R2	Ubiquitin-conjugating enzyme E2 R2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	59.685	58.525	2	0.0071384	50230	160511_QHF_FH_JSI12i_2	76.847	47.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3420	3204	3224	21051;21052	28689;28690	28689			2	
ALMLQGVDLLADAVAVTMGPK	1	Oxidation (M)	2128.1272	0.12719771	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.61		12	9						13	7	8	9	10	100.94	97.751	2;3	6.2716E-106	49005	160513_QHF_FH_JSI12Kac_6	238.81	212.27			0.97951	0.96682	21.34	34	3	Median	1.0526	0.87022	13.082	7	2	Median	0.67676	0.80799	28.037	8	1	Median	0.97521	0.97812	15.772	9	0	Median	1.0132	1.0621	20.919	10	0	Median	9942800000	5027300000	4915500000	1609700000	787270000	822410000	1324800000	778060000	546710000	3604400000	1856300000	1748100000	3404000000	1605700000	1798300000	3421	980	3225	21053;21054;21055;21056;21057;21058;21059;21060;21061;21062;21063;21064;21065;21066;21067;21068;21069;21070;21071;21072;21073;21074;21075;21076;21077;21078;21079;21080;21081;21082;21083;21084;21085;21086	28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701;28702;28703;28704;28705;28706;28707;28708;28709;28710;28711;28712;28713;28714;28715;28716;28717;28718;28719;28720;28721;28722;28723;28724;28725;28726;28727;28728;28729;28730;28731	28726		542;543	39	
ALMLQGVDLLADAVAVTMGPK	1	Unmodified	2112.1323	0.13228309	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.16	3.61	3	102	23						10	24	21	48	45	105.89	104.92	2;3	1.0173E-167	52158	160513_QHF_FH_JSI11Kac_6	336.85	303.17			0.97747	0.9587	22.793	94	38	Median	1.011	0.86903	24.605	17	7	Median	0.73384	0.8742	13.875	11	3	Median	1.0357	1.0091	21.007	32	16	Plateau	0.88472	0.95218	19.033	34	12	Median	35804000000	18697000000	17107000000	4458800000	2125400000	2333400000	4840500000	2868500000	1972000000	17239000000	8922900000	8316000000	9265900000	4780100000	4485800000	3422	980	3225	21087;21088;21089;21090;21091;21092;21093;21094;21095;21096;21097;21098;21099;21100;21101;21102;21103;21104;21105;21106;21107;21108;21109;21110;21111;21112;21113;21114;21115;21116;21117;21118;21119;21120;21121;21122;21123;21124;21125;21126;21127;21128;21129;21130;21131;21132;21133;21134;21135;21136;21137;21138;21139;21140;21141;21142;21143;21144;21145;21146;21147;21148;21149;21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167;21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214;21215;21216;21217;21218;21219;21220;21221;21222;21223;21224	28732;28733;28734;28735;28736;28737;28738;28739;28740;28741;28742;28743;28744;28745;28746;28747;28748;28749;28750;28751;28752;28753;28754;28755;28756;28757;28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801;28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857;28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908;28909;28910;28911;28912;28913	28794			177	
ALMLQGVDLLADAVAVTMGPK	1	2 Oxidation (M)	2144.1221	0.12211233	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	101.95	101.82	3	5.6764E-13	84453	160511_QHF_FH_JSI10i_3	115.76	106.82			0.99973	1.1217	31.271	4	2	Median	0.97093	0.80782	NaN	1	0	Median	0.93543	1.0803	NaN	1	0	Median	1.8538	1.7253	NaN	1	1	Median	1.0294	1.1647	NaN	1	1	Median	397680000	168130000	229550000	46040000	20335000	25705000	125110000	63975000	61140000	134570000	45147000	89419000	91962000	38674000	53288000	3423	980	3225	21225;21226;21227;21228	28914;28915;28916;28917;28918;28919	28917		542;543	6	
ALMNTQYGLER	0	Unmodified	1294.634	0.63397086	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.6	0.49		2	3							1		3	1	44.53	44.286	2	4.0486E-05	39025	160511_QHF_FH_JSI11i_3	99.013	76.927			0.86548	0.80363	23.088	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79159	0.77938	4.3332	2	2	Median	1.1516	1.1585	NaN	1	0	Median	127130000	66400000	60727000	0	0	0	0	0	0	80941000	47350000	33591000	46186000	19050000	27136000	3424	4986	3226	21229;21230;21231;21232;21233	28920;28921;28922;28923;28924;28925	28921			6	
ALMQELYSTPASR	0	Acetyl (Protein N-term)	1507.7341	0.73407884	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	88.155	87.604	2	2.5625E-05	77968	160511_QHF_FH_JSI9i_1	112.83	83.361			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3425	2693	3227	21234;21235;21236	28926;28927;28928	28928			3	
ALMQSLNMLVQTEGK	1	Unmodified	1661.8481	0.84806274	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	83.295	83.2	2;3	2.1596E-53	72242	160511_QHF_FH_JSI12i_3	225.33	195.57			0.96062	0.92999	14.616	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0446	0.97071	9.625	2	0	Median	0.83785	0.83826	18.249	2	0	Median	211890000	106740000	105150000	0	0	0	0	0	0	99713000	45739000	53974000	112180000	61000000	51178000	3426	713	3228	21237;21238;21239;21240;21241	28929;28930;28931;28932;28933;28934;28935;28936	28934			8	
ALMQVVDFLSR	0	Unmodified	1277.6802	0.68019277	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	95.379	94.942	2	5.597E-13	84500	160511_QHF_FH_JSI11i_3	145.89	113.05			1.0469	0.88016	12.065	5	1	Median	1.0636	0.87857	0.25625	2	0	Median	0.71071	0.85515	14.269	2	1	Median	1.1771	1.0752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180760000	91148000	89614000	55455000	24758000	30697000	54640000	33189000	21451000	70667000	33201000	37466000	0	0	0	3427	4608	3229	21242;21243;21244;21245;21246;21247	28937;28938;28939;28940;28941;28942;28943;28944;28945;28946;28947;28948;28949	28938			13	
ALMQVVDFLSR	0	Oxidation (M)	1293.6751	0.67510739	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			3							1	2			79.891	78.523	2	0.017912	66997	160511_QHF_FH_JSI10i_3	52.278	38.276			1.603	1.3207	NaN	1	1	Median	1.603	1.3207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17561000	6782600	10778000	17561000	6782600	10778000	0	0	0	0	0	0	0	0	0	3428	4608	3229	21248;21249;21250	28950;28951;28952	28951		2500	3	
ALMTGSLPGFVDVIR	0	Unmodified	1574.849	0.84904901	2885	Q5H8A4	PIGG	GPI ethanolamine phosphate transferase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	99.966	99.975	2	0.00020148	88987	160511_QHF_FH_JSI11i_3	88.187	59.982			0.94527	0.91037	10.444	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90819	0.84556	NaN	1	0	Median	0.98386	0.98014	NaN	1	1	Median	110490000	53021000	57465000	0	0	0	0	0	0	49395000	24908000	24487000	61091000	28112000	32979000	3429	2885	3230	21251;21252	28953;28954;28955;28956	28954			4	
ALMTVGK	1	Unmodified	718.40475	0.40474619	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	24.205	23.563	2	0.011128	20393	160511_QHF_FH_JSI10i_2	71.852	35.024			0.86622	0.91311	35.812	11	2	Median	0.98266	0.80985	28.273	2	0	Median	0.50172	0.61325	56.731	3	1	Median	0.9472	0.91311	5.499	3	0	Median	0.98759	1.0517	49.379	3	1	Plateau	2259200000	1095500000	1163700000	313270000	135940000	177340000	456520000	256680000	199840000	779570000	372210000	407360000	709840000	330710000	379130000	3430	375	3231	21253;21254;21255;21256;21257;21258;21259;21260;21261;21262;21263	28957;28958;28959;28960;28961;28962;28963;28964;28965;28966;28967;28968;28969	28967			13	
ALMTVGKEPFPTIYVDSQK	2	Unmodified	2123.0973	0.097277789	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	79.713	78.722	3	1.5699E-24	68310	160511_QHF_FH_JSI12i_3	171.68	148.35			0.95611	0.96361	10.132	3	0	Plateau	0.95611	0.79585	NaN	1	0	Median	0.78855	0.92798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97683	0.96361	NaN	1	0	Median	277930000	140920000	137010000	12887000	6126300	6760900	44658000	27649000	17008000	0	0	0	220380000	107140000	113240000	3431	375	3232	21264;21265;21266	28970;28971;28972;28973;28974	28974			5	
ALNAGFIQATDYVEIWQAYLDYLRR	0	Unmodified	2988.5134	0.51339202	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.687	92.967	3	0.00013443	54435	160513_QHF_FH_JSI10Kac_6	51.264	39.522			0.94443	1.1069	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94443	1.1069	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197590000	98415000	99179000	0	0	0	197590000	98415000	99179000	0	0	0	0	0	0	3432	2604	3233	21267	28975	28975			0	
ALNAGYILNGLTVSIPGLER	0	Unmodified	2070.1473	0.14733952	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	101.89	101.85	3	6.2293E-06	90996	160511_QHF_FH_JSI11i_3	75.358	64.079			0.80505	0.82813	12.202	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8145	0.94702	NaN	1	0	Median	0.78614	0.74226	NaN	1	0	Median	0.80505	0.82813	NaN	1	0	Median	402690000	219240000	183460000	0	0	0	53285000	26606000	26679000	76004000	42120000	33885000	273400000	150510000	122890000	3433	5708	3234	21268;21269;21270	28976;28977	28976			1	
ALNALCDGLIDELNQALK	1	Unmodified	1970.0143	0.014276441	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.8	101.62	3	0.0083279	87556	160511_QHF_FH_JSI12i_2	49.924	40.266			0.69753	0.77603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69753	0.77603	NaN	1	0	Median	88278000	42069000	46209000	0	0	0	0	0	0	0	0	0	88278000	42069000	46209000	3434	1341	3235	21271	28978	28978			0	
ALNEALK	1	Unmodified	757.4334	0.43340378	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	19.596	18.451	2	0.016874	14825	160511_QHF_FH_JSI9i_3	55.676	14.174			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3435	1664	3236	21272;21273	28979;28980	28980			2	
ALNEALKLFK	2	Acetyl (K)	1187.6914	0.69140938	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.5	0.5								1	1		1	1		82.128	72.277	2	5.6096E-05	39753	160513_QHF_FH_JSI11Kac_6	103.26	71.321			0.9605	1.1062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9605	1.1062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14473000	13523000	949430	0	0	0	1910500	961070	949430	12562000	12562000	0	0	0	0	3436	1664	3237	21274;21275	28981;28982	28981	1687;1688		2	
ALNEVFIGESLSSR	0	Unmodified	1520.7835	0.78347187	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	1	3	71.447	70.79	2	7.3266E-05	61351	160511_QHF_FH_JSI12i_3	115.83	84.761			1.1099	1.1779	11.043	5	3	Median	NaN	NaN	NaN	0	0	Median	0.8923	1.0907	NaN	1	1	Median	1.3855	1.4381	NaN	1	0	Median	1.1099	1.1779	6.751	3	2	Median	179510000	83125000	96383000	0	0	0	35110000	16677000	18434000	36081000	16239000	19842000	108320000	50210000	58107000	3437	2832	3238	21276;21277;21278;21279;21280	28983;28984;28985;28986;28987;28988	28988			6	
ALNFAYTVSTQR	0	Unmodified	1369.699	0.69901396	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		65.637	56.367	2	0.0022142	30553	160513_QHF_FH_JSI11Kac_6	77.062	46.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3438	410	3239	21281;21282	28989;28990	28989			2	
ALNFGLGRPLPLHFLR	0	Unmodified	1820.0573	0.057342726	1058	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			83.662	76.559	4	2.3861E-24	42994	160513_QHF_FH_JSI10Kac_6	157.2	128.47			1.0982	1.1143	7.0353	2	0	Median	1.2243	1.0602	NaN	1	0	Median	0.98515	1.1711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	261240000	134510000	126730000	46481000	24805000	21676000	214760000	109700000	105060000	0	0	0	0	0	0	3439	1058	3240	21283;21284	28991;28992;28993	28993			3	
ALNFLVNEFLLK	1	Unmodified	1419.8126	0.81258715	5201	Q9P260	KIAA1468	LisH domain and HEAT repeat-containing protein KIAA1468	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	101.92	101.93	2	0.041365	88644	160511_QHF_FH_JSI12i_3	51.436	7.412			0.70645	0.69765	23.254	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86519	0.82233	NaN	1	0	Median	0.57683	0.59187	NaN	1	0	Median	184420000	112790000	71630000	0	0	0	0	0	0	37013000	19902000	17110000	147400000	92883000	54520000	3440	5201	3241	21285;21286	28994	28994			0	
ALNGAEPNYHSLPSAR	0	Unmodified	1695.8329	0.83288168	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	37.814	37.031	2;3	9.0261E-06	31479	160511_QHF_FH_JSI12i_3	81.317	70.373			0.93111	0.90128	12.092	6	1	Median	1.031	0.90128	3.495	2	1	Median	0.76408	0.91202	25.892	2	0	Median	1.0222	0.95813	NaN	1	0	Median	0.86838	0.87007	NaN	1	0	Median	478520000	243050000	235470000	107460000	51569000	55891000	162720000	84758000	77959000	119330000	60042000	59287000	89017000	46681000	42336000	3441	3051	3242	21287;21288;21289;21290;21291;21292;21293	28995;28996;28997;28998;28999;29000;29001;29002;29003;29004;29005	29005			11	
ALNGEQAAGHAR	0	Unmodified	1193.5901	0.59013221	4074	Q96FS4	SIPA1	Signal-induced proliferation-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	2	2	49.535	48.536	2;3	0.035753	42878	160511_QHF_FH_JSI11i_3	17.211	13.334			0.89845	1.0041	24.228	10	0	Median	0.90107	0.70888	26.309	3	0	Median	0.89584	1.021	2.3059	3	0	Median	1.2537	1.1974	14.423	2	0	Median	0.67826	0.69155	5.0479	2	0	Median	1759000000	806230000	952810000	1132300000	487860000	644450000	229930000	122800000	107120000	294600000	134050000	160550000	102200000	61514000	40686000	3442	4074	3243	21294;21295;21296;21297;21298;21299;21300;21301;21302;21303	29006;29007;29008;29009;29010;29011	29007			6	
ALNHEIEELEK	1	Unmodified	1323.667	0.66704513	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	40.251	39.558	2;3	3.7055E-10	33467	160511_QHF_FH_JSI12i_3	138.45	125.62			1.0214	1.0407	11.56	11	0	Median	1.1097	0.9503	9.5443	2	0	Median	0.82834	1.0166	11.353	2	0	Median	1.322	1.2025	17.806	3	0	Median	0.9859	1.0546	4.3454	4	0	Median	995250000	551950000	443300000	101120000	48495000	52620000	223060000	134100000	88958000	211210000	104280000	106930000	459860000	265070000	194790000	3443	679	3244	21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314	29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028;29029;29030	29030			19	
ALNHSVEDIEPDLLTPR	0	Unmodified	1917.9796	0.97960549	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	67.777	67.482	3	0.00016053	60037	160511_QHF_FH_JSI11i_3	58.635	52.065			1.1661	1.1623	29.696	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4966	1.4506	31.33	2	1	Median	1.0074	1.0299	NaN	1	1	Median	204680000	99104000	105570000	0	0	0	0	0	0	136580000	67061000	69524000	68091000	32043000	36048000	3444	3425	3245	21315;21316;21317	29031;29032;29033	29031			3	
ALNILQSTNMAFGK	1	Unmodified	1506.7864	0.78644876	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	3	2	2	2	81.185	79.636	2;3	1.714E-15	66332	160511_QHF_FH_JSI9i_3	199.09	150.29			1.094	0.95761	28.046	8	1	Median	1.1287	0.89702	43.152	3	1	Plateau	0.78716	0.9124	NaN	1	0	Median	1.1433	1.074	9.3752	2	0	Median	0.87889	0.87666	2.6791	2	0	Median	721100000	310720000	410370000	82184000	32542000	49642000	61713000	33283000	28430000	247850000	99029000	148820000	329350000	145870000	183480000	3445	1505	3246	21318;21319;21320;21321;21322;21323;21324;21325;21326	29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047	29041			12	
ALNILQSTNMAFGK	1	Oxidation (M)	1522.7814	0.78136338	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	70.482	69.773	2	1.493E-05	60357	160511_QHF_FH_JSI12i_3	124.1	98.061			0.76496	0.7688	35.581	5	4	Median	0.91916	0.7688	NaN	1	0	Median	0.76496	0.90041	NaN	1	1	Median	0.4177	0.39591	NaN	1	1	Median	0.80527	0.81466	25.429	2	2	Median	155810000	90844000	64965000	12516000	7088400	5427500	16289000	8755500	7533600	23980000	16971000	7009300	103020000	58029000	44994000	3446	1505	3246	21327;21328;21329;21330;21331	29048;29049;29050;29051;29052;29053	29052		1184	6	
ALNIVDQEGSLLGK	1	Unmodified	1455.7933	0.79330827	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	72.228	71.849	2	0.00080335	65044	160511_QHF_FH_JSI10i_1	68.44	58.487			1.4332	1.3749	10.681	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1088	1.2887	NaN	1	0	Median	1.4332	1.3749	NaN	1	0	Median	1.4858	1.5877	NaN	1	0	Median	82863000	37710000	45153000	0	0	0	29086000	16446000	12640000	31366000	12643000	18722000	22412000	8620100	13792000	3447	3436	3247	21332;21333;21334	29054	29054			1	
ALNLAYSSIYGSYR	0	Unmodified	1576.7886	0.78855725	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	3	3	3	72.863	69.758	2	7.8935E-37	35462	160513_QHF_FH_JSI12Kac_6	178.71	151.82			0.90003	0.9085	15.083	11	2	Median	1.3738	1.1723	23.37	3	1	Plateau	0.77253	0.92082	13.788	2	1	Median	0.92031	0.85407	5.4811	3	0	Plateau	0.90003	0.9085	13.054	3	0	Plateau	533670000	267780000	265890000	186740000	87804000	98934000	61704000	30894000	30810000	154560000	79735000	74830000	130660000	69350000	61314000	3448	3229	3248	21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346	29055;29056;29057;29058;29059;29060;29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076	29076			22	
ALNLFQGSVEDTTGSQSLAALLNK	1	Unmodified	2476.2809	0.28093247	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	101.43	101.38	3	1.5675E-34	88104	160511_QHF_FH_JSI12i_3	175.77	160.64			0.87789	0.88905	17.287	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0289	1.1869	NaN	1	0	Median	0.90895	0.87147	NaN	1	1	Median	0.87789	0.88905	NaN	1	0	Median	1134900000	602070000	532820000	0	0	0	114580000	49758000	64823000	306060000	180490000	125570000	714250000	371820000	342430000	3449	1557	3249	21347;21348;21349	29077;29078	29078			2	
ALNLIGK	1	Unmodified	727.45922	0.4592246	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	39.644	38.78	2	0.032473	33892	160511_QHF_FH_JSI9i_2	52.683	17.578			0.77813	0.89852	17.872	3	1	Plateau	1.4796	1.2736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84377	0.94792	7.5682	2	0	Median	111100000	63797000	47303000	19917000	8107300	11810000	0	0	0	0	0	0	91183000	55689000	35493000	3450	3869	3250	21350;21351;21352	29079;29080	29080			2	
ALNLLPANTQINDIR	0	Unmodified	1664.921	0.9209684	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.507	76.875	2	0.010194	67504	160511_QHF_FH_JSI11i_2	57.348	30.834			0.69124	0.67604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69124	0.67604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10767000	7302100	3465300	0	0	0	0	0	0	10767000	7302100	3465300	0	0	0	3451	4137	3251	21353	29081	29081			1	
ALNMAIPGGPK	1	Unmodified	1067.5798	0.57975044	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.205	51.536	2	0.00046406	46409	160511_QHF_FH_JSI10i_1	86.67	57.294			0.13365	0.20383	39.943	4	4	Linear	0.48967	0.39773	NaN	1	1	Median	0.17518	0.21081	NaN	1	1	Median	0.16042	0.15639	NaN	1	1	Median	0.18425	0.19707	NaN	1	1	Median	2095700000	1858200000	237510000	226390000	177290000	49100000	683230000	616980000	66244000	824230000	755340000	68887000	361890000	308620000	53275000	3452	3101	3252	21354;21355;21356;21357	29082;29083;29084;29085;29086	29085			5	
ALNQEQVIAVHIDNGFMR	0	Oxidation (M)	2070.0317	0.031657839	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	66.502	66.353	3	5.0786E-05	57358	160511_QHF_FH_JSI12i_3	69.522	59.764			1.0949	1.1144	0.42752	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.195	1.111	NaN	1	0	Median	1.0033	1.1178	NaN	1	0	Median	109190000	49655000	59537000	0	0	0	0	0	0	35477000	17816000	17661000	73715000	31839000	41876000	3453	1693	3253	21358;21359	29087;29088;29089	29089		1368	3	
ALNQEQVIAVHIDNGFMR	0	Unmodified	2054.0367	0.036743217	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	75.649	75.314	2;3	4.2401E-17	65425	160511_QHF_FH_JSI12i_3	164.68	149.42			1.2715	1.2539	33.85	4	2	Median	0.81781	0.70215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2337	1.1647	NaN	1	0	Median	1.3735	1.4289	8.0268	2	1	Median	630310000	273230000	357080000	86036000	35465000	50572000	0	0	0	211740000	90015000	121730000	332530000	147750000	184780000	3454	1693	3253	21360;21361;21362;21363;21364	29090;29091;29092;29093;29094;29095;29096;29097	29095			8	
ALNRPPTYPTK	1	Unmodified	1256.6877	0.68772099	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		23.111	22.26	3	0.0055854	18323	160511_QHF_FH_JSI10i_3	40.516	23.896			0.91681	0.81375	11.543	3	0	Plateau	1.0125	0.81375	NaN	1	0	Median	0.83019	0.95831	NaN	1	0	Median	0.8176	0.76684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	188320000	98315000	90004000	92310000	44954000	47355000	66957000	36694000	30263000	29051000	16666000	12385000	0	0	0	3455	1839	3254	21365;21366;21367	29098;29099	29099			2	
ALNSAANNVYQYGR	0	Unmodified	1539.743	0.74300404	4687	Q9H330	TMEM245	Transmembrane protein 245	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.99	3	4	2					1		1	2	5	2	39.759	38.215	2	2.766E-40	33383	160511_QHF_FH_JSI9i_2	206.97	157.55			0.92851	0.9185	53.083	10	4	Median	1.2097	1.0605	NaN	1	0	Median	0.46912	0.55745	46.105	2	1	Median	0.92331	0.91817	61.897	5	3	Median	1.2483	1.3223	1.7348	2	0	Median	346250000	186830000	159410000	45829000	22764000	23066000	72313000	44012000	28301000	140230000	73241000	66984000	87878000	46815000	41063000	3456	4687	3255	21368;21369;21370;21371;21372;21373;21374;21375;21376;21377	29100;29101;29102;29103;29104;29105;29106;29107;29108;29109;29110;29111;29112;29113;29114;29115	29108			16	
ALNTFIDDLFAFVIK	1	Unmodified	1725.9342	0.93415885	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.33	94.875	2;3	1.0896E-32	57084	160513_QHF_FH_JSI10Kac_6	208.51	164.09			0.92751	0.94196	33.262	2	0	Median	1.378	1.1917	NaN	1	0	Median	0.62429	0.74454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186810000	103390000	83418000	48206000	18878000	29328000	138600000	84512000	54089000	0	0	0	0	0	0	3457	751	3256	21378;21379	29116;29117;29118;29119	29118			4	
ALNVAPVR	0	Acetyl (Protein N-term)	880.51305	0.51305109	3002	Q5VZF2	MBNL2	Muscleblind-like protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.016	51.209	2	0.0033223	46273	160511_QHF_FH_JSI11i_1	62.714	48.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3458	3002	3257	21380;21381;21382	29120;29121;29122	29120			3	
ALNVEPDGTGLTCSLAPNIISQL	0	Unmodified	2382.2101	0.21007572	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	102.08	102	3	0.00022555	92596	160511_QHF_FH_JSI12i_1	43.956	35.456			1.3117	1.3494	49.213	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83076	0.9666	NaN	1	0	Median	0.51476	0.51216	NaN	1	0	Median	1.3117	1.3494	NaN	1	0	Median	478350000	245320000	233030000	0	0	0	154800000	84156000	70641000	133450000	85591000	47859000	190100000	75574000	114530000	3459	1335	3258	21383;21384;21385	29123	29123			1	
ALPASETPK	1	Unmodified	912.49165	0.49164694	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	19.254	17.441	2	0.0023102	15006	160511_QHF_FH_JSI12i_1	65.246	19.231			0.78094	0.77115	6.4121	5	0	Median	0.89956	0.74738	NaN	1	0	Median	0.6296	0.72821	NaN	1	0	Median	0.82516	0.80367	NaN	1	0	Median	0.76171	0.81298	7.4688	2	0	Median	1555800000	889290000	666520000	359520000	194500000	165030000	329880000	209900000	119980000	341060000	183370000	157700000	525350000	301530000	223820000	3460	596	3259	21386;21387;21388;21389;21390	29124;29125;29126;29127;29128	29124			5	
ALPAVQQNNLDEDLIRK	1	Unmodified	1936.0378	0.037789075	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.32		4	8					1		2	4	4	3	63.602	62.045	2;3	1.2593E-65	55035	160511_QHF_FH_JSI11i_3	232.25	202.32			1.2509	1.273	70.09	10	9	Median	11.607	9.6537	NaN	1	1	Median	1.5383	1.7493	7.0778	2	2	Median	1.0443	0.98923	25.886	4	3	Median	1.1518	1.1736	13.746	3	3	Median	11513000000	4722900000	6790000000	1763600000	127270000	1636400000	980480000	502850000	477620000	6879200000	3206200000	3673000000	1889600000	886590000	1003000000	3461	1208	3260	21391;21392;21393;21394;21395;21396;21397;21398;21399;21400;21401;21402;21403	29129;29130;29131;29132;29133;29134;29135;29136;29137;29138;29139;29140;29141;29142;29143;29144;29145	29129			17	
ALPCIVDVRDEQQISAAVEK	1	Unmodified	2240.1471	0.14708153	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	77.122	76.786	3	1.5201E-05	68518	160511_QHF_FH_JSI11i_3	71.073	55.819			1.0377	0.96448	16.281	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0784	1.2975	NaN	1	1	Median	1.0377	0.96448	NaN	1	0	Median	1.0114	0.99588	NaN	1	0	Median	114070000	58680000	55385000	0	0	0	18358000	6598200	11760000	68186000	39375000	28811000	27521000	12707000	14814000	3462	3175	3261	21404;21405;21406	29146;29147;29148;29149	29146			4	
ALPDMEVVGLNFSSATTPELLLK	1	Unmodified	2444.2873	0.2872634	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.05	101.87	3	5.15E-16	87846	160511_QHF_FH_JSI12i_2	126.02	118.03			0.84539	0.93883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84539	0.93883	NaN	1	1	Median	142920000	68244000	74674000	0	0	0	0	0	0	0	0	0	142920000	68244000	74674000	3463	2517	3262	21407	29150	29150			1	
ALPELTK	1	Unmodified	770.4538	0.45380487	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		36.736	36.187	2	0.015081	32305	160511_QHF_FH_JSI9i_1	57.281	0			1.5279	1.4954	24.052	4	1	Median	2.0031	1.651	NaN	1	1	Median	1.0736	1.2342	13.159	2	0	Median	2.0389	1.9585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163160000	65738000	97426000	43762000	12195000	31567000	93668000	44941000	48727000	25734000	8602000	17132000	0	0	0	3464	1065	3263	21408;21409;21410;21411;21412	29151;29152;29153;29154	29154			4	
ALPESLGQHALR	0	Unmodified	1290.7044	0.70443369	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	40.611	40.019	2;3	2.7686E-06	34111	160511_QHF_FH_JSI12i_3	117.09	109.83			0.59283	0.59471	21.817	5	1	Median	0.67682	0.59471	NaN	1	0	Median	0.4768	0.55996	NaN	1	0	Median	0.41569	0.39715	NaN	1	0	Median	0.65233	0.65653	13.553	2	1	Median	1194100000	805850000	388280000	126760000	83266000	43498000	198740000	160380000	38367000	425990000	299340000	126650000	442640000	262880000	179760000	3465	603	3264	21413;21414;21415;21416;21417	29155;29156;29157;29158;29159	29158			3	
ALPEVHYHLGQK	1	Unmodified	1390.7357	0.73573382	881	P07902	GALT	Galactose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	40.008	39.579	3;4	5.6708E-05	34625	160511_QHF_FH_JSI11i_3	76.522	69.321			0.96886	1.0259	20.331	4	1	Median	NaN	NaN	NaN	0	0	Median	0.97886	1.0965	NaN	1	0	Median	1.0941	1.0296	33.931	2	1	Median	0.95897	0.95979	NaN	1	0	Median	236780000	116730000	120050000	0	0	0	22257000	9693100	12563000	109520000	54472000	55048000	105000000	52565000	52437000	3466	881	3265	21418;21419;21420;21421;21422	29160;29161;29162;29163	29160			3	
ALPFVPMSYQLSQTYYR	0	Unmodified	2063.0186	0.018633537	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			100.52	100.35	3	0.013864	83010	160511_QHF_FH_JSI10i_3	37.583	27.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3467	2305	3266	21423	29164	29164			1	
ALPFWNEEIVPQIK	1	Unmodified	1682.9032	0.90319307	1144	P18669;Q8N0Y7;P15259	PGAM1;PGAM4;PGAM2	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	6.45	7	8	8						10	8	8	8	9	98.11	95.477	2;3	5.574E-52	81910	160511_QHF_FH_JSI9i_3	218.15	187.59			1.068	1.0299	14.847	33	5	Median	1.1587	0.98299	19.196	8	2	Median	0.88432	1.0341	13.787	8	1	Median	1.075	1.2302	11.706	8	0	Linear	0.9953	1.1018	16.208	9	2	Median	37954000000	18332000000	19622000000	7589600000	3539100000	4050500000	7349500000	3625300000	3724200000	12152000000	5702600000	6449000000	10863000000	5464900000	5398300000	3468	1144	3267	21424;21425;21426;21427;21428;21429;21430;21431;21432;21433;21434;21435;21436;21437;21438;21439;21440;21441;21442;21443;21444;21445;21446;21447;21448;21449;21450;21451;21452;21453;21454;21455;21456	29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175;29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187;29188;29189;29190;29191;29192;29193;29194;29195;29196;29197;29198;29199;29200;29201;29202;29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213;29214;29215;29216;29217;29218;29219	29193			55	
ALPGMGTTIDVILINGR	0	Unmodified	1739.9604	0.96039038	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7.8	6.71		2	1						2	1	2		2	98.229	96.731	2;3	2.4966E-32	47824	160513_QHF_FH_JSI10Kac_6	166.7	123.19			0.85044	0.98216	24.484	4	0	Median	1.3287	1.1252	NaN	1	0	Median	0.74472	0.87736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8071	0.85512	35.547	2	0	Median	226320000	110790000	115530000	50860000	20370000	30490000	48021000	22172000	25849000	0	0	0	127440000	68250000	59189000	3469	454	3268	21457;21458;21459;21460;21461	29220;29221;29222;29223	29222			4	
ALPGVDPNDFSK	1	Unmodified	1258.6194	0.61936665	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	59.236	58.501	2	0.0082317	52976	160511_QHF_FH_JSI11i_1	59.426	38.556			0.78503	0.63899	36.19	3	3	Median	0.78503	0.63899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53647	0.50392	NaN	1	1	Median	0.95174	1.0259	NaN	1	1	Median	121270000	63671000	57601000	34964000	15609000	19355000	0	0	0	49528000	28976000	20552000	36780000	19086000	17694000	3470	2588	3269	21462;21463;21464	29224;29225;29226;29227	29224			4	
ALPHLIQDAGQFYAK	1	Unmodified	1670.878	0.87804096	4156	Q96KC8	DNAJC1	DnaJ homolog subfamily C member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	71.668	71.371	3	0.0038414	61884	160511_QHF_FH_JSI12i_3	56.29	45.656			1.1087	1.0742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1087	1.0742	NaN	1	0	Median	44198000	20643000	23555000	0	0	0	0	0	0	0	0	0	44198000	20643000	23555000	3471	4156	3270	21465	29228	29228			0	
ALPIIVK	1	Acetyl (Protein N-term)	794.52658	0.52657589	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.707	81.238	2	0.014913	73742	160511_QHF_FH_JSI10i_1	33.738	16.812			0.97308	1.0642	13.687	4	0	Linear	1.0069	0.80576	NaN	1	0	Median	0.7059	0.78761	NaN	1	0	Median	1.0902	1.0455	NaN	1	0	Median	0.94038	0.9585	NaN	1	0	Median	127580000	67594000	59981000	24812000	15189000	9622400	18600000	10858000	7741500	51752000	24024000	27728000	32412000	17523000	14889000	3472	3791	3271	21466;21467;21468;21469	29229;29230;29231;29232;29233;29234;29235	29233			7	
ALPILEELLR	0	Unmodified	1165.7071	0.70705945	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2	0		3								1	1		1	101.98	101.88	2	0.001546	87772	160511_QHF_FH_JSI12i_2	65.224	37.97			0.96728	1.0795	18.861	3	0	Plateau	0.91265	0.80043	NaN	1	0	Median	0.92622	1.1343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0102	1.0795	NaN	1	0	Median	92616000	48871000	43745000	18267000	11019000	7247500	33125000	16683000	16442000	0	0	0	41224000	21169000	20056000	3473	3195	3272	21470;21471;21472	29236	29236			1	
ALPITQHSR	0	Unmodified	1021.5669	0.56687757	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			16.61	15.548	2;3	0.015204	12394	160511_QHF_FH_JSI9i_3	35.612	19.369			0.92193	0.90804	6.3067	2	1	Median	1.0445	0.86843	NaN	1	0	Median	0.81377	0.94945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62782000	29257000	33524000	19542000	7919100	11623000	43240000	21338000	21902000	0	0	0	0	0	0	3474	4863	3273	21473;21474;21475	29237;29238;29239	29239			3	
ALPLALVLHELGAGR	0	Unmodified	1528.9089	0.90894715	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	8.57	6.43			4						3	2	2	2	1	97.774	94.305	3	1.3684E-05	84058	160511_QHF_FH_JSI10i_3	117.2	95.646			0.94621	1.0455	19.064	7	0	Median	1.0365	0.87321	25.469	2	0	Median	0.90018	1.0443	4.5151	2	0	Median	1.0437	0.98872	16.23	2	0	Median	1.2908	1.3387	NaN	1	0	Median	628610000	317270000	311340000	120700000	61822000	58880000	242830000	130890000	111940000	225320000	106890000	118430000	39760000	17665000	22094000	3475	1167	3274	21476;21477;21478;21479;21480;21481;21482	29240;29241;29242	29240			2	
ALPLEAEVAPVK	1	Unmodified	1235.7125	0.71253876	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.63	4	3				1	2			2	2	3	3	67.283	63.812	2	6.1376E-05	58126	160511_QHF_FH_JSI12i_1	96.89	77.103			0.95354	0.9635	8.0939	10	2	Median	1.0978	0.92077	6.7217	2	1	Median	0.8184	0.99147	9.0262	2	0	Median	0.97539	0.96142	9.8312	3	0	Median	0.94464	0.99955	10.117	3	1	Median	1307200000	663700000	643460000	278300000	135240000	143060000	335750000	173520000	162220000	355920000	176180000	179740000	337190000	178750000	158430000	3476	1298	3275	21483;21484;21485;21486;21487;21488;21489;21490;21491;21492	29243;29244;29245;29246;29247;29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258;29259;29260	29246			17	
ALPLIVGAQLIHADK	1	Unmodified	1557.9243	0.92426287	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	3	2	86.108	85.478	2;3	9.5073E-28	70193	160511_QHF_FH_JSI9i_3	151.56	132.83			0.91561	0.8598	10.955	4	4	Median	1.0382	0.82499	NaN	1	1	Median	0.7745	0.89608	NaN	1	1	Median	1.0861	1.0257	NaN	1	1	Median	0.80753	0.80419	NaN	1	1	Median	972010000	493900000	478110000	163540000	72027000	91515000	180810000	95939000	84875000	271490000	130590000	140910000	356160000	195340000	160820000	3477	2927	3276	21493;21494;21495;21496;21497;21498;21499;21500;21501;21502	29261;29262;29263;29264;29265;29266;29267;29268;29269;29270;29271	29268			11	
ALPLLFNLIK	1	Unmodified	1140.7271	0.72706661	3329	Q86UT6	NLRX1	NLR family member X1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	102.11	102	2	1.1196E-06	88848	160511_QHF_FH_JSI12i_3	126.67	115.84			0.94829	0.88798	18.605	3	2	Median	0.94829	0.7723	NaN	1	1	Median	0.7664	0.88798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.091	1.1164	NaN	1	1	Median	155680000	81834000	73842000	38058000	19770000	18288000	42436000	23962000	18474000	0	0	0	75181000	38101000	37080000	3478	3329	3277	21503;21504;21505	29272;29273;29274	29274			3	
ALPLPHFDTINLPEK	1	Unmodified	1703.9247	0.9246568	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	86.287	86.21	3	1.548E-05	77048	160511_QHF_FH_JSI11i_3	115.82	104.54			1.1464	1.1051	8.4883	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2639	1.1735	NaN	1	0	Median	1.0398	1.0408	NaN	1	0	Median	259610000	125580000	134030000	0	0	0	0	0	0	100020000	45961000	54062000	159590000	79618000	79969000	3479	5412	3278	21506;21507;21508	29275;29276;29277;29278;29279;29280;29281	29276			7	
ALPLWLSLQYLGLDGFVER	0	Unmodified	2189.1885	0.18847606	3111	Q6P996;Q6P474	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	100.08	92.572	2;3	4.2316E-44	55451	160513_QHF_FH_JSI10Kac_6	209.21	187.91			0.94789	1.0506	8.9194	4	0	Median	1.2254	1.0314	NaN	1	0	Median	0.93904	1.1266	7.2603	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90979	0.957	NaN	1	0	Median	1262600000	686300000	576290000	212430000	96708000	115720000	813850000	457490000	356360000	0	0	0	236310000	132100000	104220000	3480	3111	3279	21509;21510;21511;21512	29282;29283;29284;29285;29286	29286			5	
ALPNPEK	1	Unmodified	767.41775	0.41775372	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				18.593	17.494	2	0.048731	14589	160511_QHF_FH_JSI9i_1	47.916	47.916			3.1954	2.5615	NaN	1	1	Median	3.1954	2.5615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41049000	11933000	29116000	41049000	11933000	29116000	0	0	0	0	0	0	0	0	0	3481	4288	3280	21513	29287	29287			1	
ALPSEELNR	0	Unmodified	1027.5298	0.52982336	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	30.538	29.693	2	0.002057	24922	160511_QHF_FH_JSI12i_2	66.351	11.74			0.83702	0.8687	5.632	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84192	0.83479	NaN	1	0	Median	0.83215	0.904	NaN	1	0	Median	454750000	249710000	205040000	0	0	0	0	0	0	213010000	116940000	96068000	241740000	132760000	108980000	3482	2217	3281	21514;21515	29288;29289	29288			2	
ALPSKPNSLDQFK	2	Unmodified	1443.7722	0.7721789	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			46.142	44.556	2;3	0.00052935	36404	160511_QHF_FH_JSI9i_3	75.294	39.35			0.90655	0.89641	12.642	2	0	Median	1.0009	0.81975	NaN	1	0	Median	0.82107	0.98023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181400000	88136000	93265000	89220000	39438000	49782000	92180000	48697000	43483000	0	0	0	0	0	0	3483	4141	3282	21516;21517;21518;21519	29290;29291;29292;29293;29294;29295	29295			6	
ALPSMDKYAVFK	2	Acetyl (K);Oxidation (M)	1426.7166	0.71663786	5431	Q9UMZ2	SYNRG	Synergin gamma	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		73.892	63.161	2	0.0062098	33678	160513_QHF_FH_JSI11Kac_5	54.608	28.094			0.88357	0.8547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88357	0.8547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6302800	3391100	2911700	0	0	0	0	0	0	6302800	3391100	2911700	0	0	0	3484	5431	3283	21520	29296	29296	3410	2656	1	
ALPSMDKYAVFK	2	Acetyl (K)	1410.7217	0.72172323	5431	Q9UMZ2	SYNRG	Synergin gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		82.379	71.916	2	2.5731E-05	38031	160513_QHF_FH_JSI11Kac_5	100.15	62.428			0.91991	0.99459	44.014	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1372	1.3577	NaN	1	0	Median	0.74413	0.72858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15497000	7309500	8187100	0	0	0	2347500	1087300	1260200	13149000	6222200	6926900	0	0	0	3485	5431	3283	21521;21522	29297;29298;29299;29300	29297	3410		4	
ALPSQGLSSSAVLEK	1	Unmodified	1485.8039	0.80387296	698	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.052	55.391	2	0.012807	50327	160511_QHF_FH_JSI12i_1	54.776	29.117			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15568000	0	15568000	0	0	0	0	0	0	0	0	0	15568000	0	15568000	3486	698	3284	21523	29301	29301			1	
ALPTSKPEGSLHSSPVGPSSSK	2	Unmodified	2149.1015	0.10151154	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		32.95	31.823	3;4	9.1433E-08	25873	160511_QHF_FH_JSI9i_3	87.326	67.773			0.8473	0.74117	23.537	5	0	Median	0.87286	0.7105	5.9774	2	0	Median	0.91004	1.0549	8.4337	2	0	Median	0.71024	0.66649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	608500000	317840000	290660000	300890000	140850000	160040000	261350000	155140000	106210000	46259000	21850000	24410000	0	0	0	3487	5466	3285	21524;21525;21526;21527;21528	29302;29303;29304;29305;29306;29307;29308;29309;29310	29309			9	
ALQAAIQQLAEAQPEATAK	1	Unmodified	1951.0375	0.037454724	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.653	2	8	5							1	4	5	5	72.839	72.244	2;3	1.5582E-41	62763	160511_QHF_FH_JSI12i_3	238.47	203.47			1.0834	1.0655	24.25	14	11	Median	1.7613	1.5163	NaN	1	1	Median	0.84894	1.028	37.753	4	3	Median	1.1385	1.1171	7.9146	4	3	Median	0.92239	0.98896	18.313	5	4	Median	610940000	304150000	306790000	11810000	2342600	9467000	188310000	99387000	88921000	185240000	89681000	95560000	225580000	112740000	112840000	3488	3860	3286	21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542;21543	29311;29312;29313;29314;29315;29316;29317;29318;29319;29320;29321;29322;29323;29324;29325;29326;29327;29328	29328			18	
ALQAAYGASAPSVTSAALR	0	Unmodified	1803.9479	0.94791144	338	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	6	6	3							1	5	5	4	59.409	58.818	2;3	2.5765E-24	52250	160511_QHF_FH_JSI11i_3	175.28	161.37			0.89338	0.9402	10.613	14	3	Median	1.3091	1.1098	NaN	1	0	Median	0.76121	0.92083	4.5346	4	0	Median	0.98732	0.97099	11.316	5	2	Median	0.85745	0.93339	13.082	4	1	Median	967380000	503110000	464260000	52312000	23992000	28320000	303530000	160570000	142970000	409270000	201820000	207450000	202260000	116730000	85524000	3489	338	3287	21544;21545;21546;21547;21548;21549;21550;21551;21552;21553;21554;21555;21556;21557;21558	29329;29330;29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346	29330			18	
ALQALEELR	0	Unmodified	1041.5819	0.58185893	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	55.153	54.211	2	0.00045216	46519	160511_QHF_FH_JSI12i_2	80.438	41.646			1.1794	1.2502	17.208	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3965	1.4119	NaN	1	0	Median	0.99614	1.1069	NaN	1	0	Median	162920000	65379000	97540000	0	0	0	0	0	0	89174000	31832000	57342000	73746000	33547000	40198000	3490	2636	3288	21559;21560	29347;29348	29347			2	
ALQALQQEHK	1	Unmodified	1164.6251	0.62512073	4370	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	15.753	15.576	2;3	2.7632E-06	12261	160511_QHF_FH_JSI12i_3	103.42	96.531			0.72852	0.75407	12.59	5	1	Median	NaN	NaN	NaN	0	0	Median	0.55226	0.62087	NaN	1	0	Median	0.82901	0.77945	2.9619	2	0	Median	0.67055	0.67734	15.175	2	1	Median	781150000	463690000	317460000	0	0	0	31085000	18772000	12313000	339390000	215090000	124300000	410680000	229830000	180850000	3491	4370	3289	21561;21562;21563;21564;21565;21566;21567	29349;29350;29351;29352;29353;29354;29355;29356	29355			8	
ALQAQEIECR	0	Unmodified	1216.587	0.58702067	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.893	26.345	2	7.2797E-05	23494	160511_QHF_FH_JSI12i_1	88.681	76.153			1.4461	1.482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4461	1.482	NaN	1	0	Median	47220000	17746000	29474000	0	0	0	0	0	0	0	0	0	47220000	17746000	29474000	3492	3593	3290	21568	29357	29357			1	
ALQAQVQYQQQHEQQK	1	Unmodified	1953.9657	0.96568676	3145	Q6UVJ0	SASS6	Spindle assembly abnormal protein 6 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		20.393	20.393	3	1.8478E-05	17139	160511_QHF_FH_JSI11i_3	88.311	82.993			0.99424	0.94163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99424	0.94163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23847000	11659000	12188000	0	0	0	0	0	0	23847000	11659000	12188000	0	0	0	3493	3145	3291	21569	29358;29359	29359			2	
ALQASALK	1	Unmodified	800.4756	0.47560295	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.11	4	4	4			4	3	3	1	5	6	6	6	24.206	19.357	2	1.6178E-06	17713	160511_QHF_FH_JSI12i_1	147.52	32.736			0.91818	0.96968	14.791	23	0	Median	1.1864	0.99375	23.891	5	0	Median	0.87274	1.0198	11.079	6	0	Median	0.94421	0.93706	15.581	6	0	Median	0.90943	0.96662	8.1016	6	0	Median	37726000000	19022000000	18704000000	7761600000	3334000000	4427600000	9082400000	4685500000	4396900000	11489000000	6521500000	4967600000	9392500000	4480900000	4911600000	3494	803	3292	21570;21571;21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586;21587;21588;21589;21590;21591;21592	29360;29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376;29377;29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389;29390;29391;29392;29393;29394;29395;29396;29397;29398;29399;29400;29401;29402;29403;29404	29369			45	
ALQASALKAWGGK	2	Acetyl (K)	1341.7405	0.74048484	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5		1	3	1	1	73.928	63.349	2;3	4.4036E-16	33796	160513_QHF_FH_JSI11Kac_5	134.2	103.63			0.81782	0.90149	22.488	6	0	Median	0.97605	0.82177	NaN	1	0	Median	0.85308	1	6.5202	3	0	Plateau	0.5483	0.54501	NaN	1	0	Median	0.88217	0.97704	NaN	1	0	Median	46307000	28059000	18248000	5115300	2920400	2194800	16678000	7956900	8721500	16328000	12651000	3676900	8185600	4531100	3654500	3495	803	3293	21593;21594;21595;21596;21597;21598	29405;29406;29407;29408;29409;29410;29411;29412;29413;29414	29409	426		10	
ALQASALKAWGGKK	3	Acetyl (K)	1469.8354	0.83544786	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	2		By matching		By MS/MS	16	0									2		1		1	63.379	54.274	3	0.0039776	28502	160513_QHF_FH_JSI12Kac_6	61.732	48.751			0.97431	1.1127	8.4484	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9845	1.1812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96423	1.0482	NaN	1	0	Median	57824000	28772000	29052000	0	0	0	40748000	21226000	19523000	0	0	0	17076000	7546600	9529400	3496	803	3294	21599;21600	29415	29415	426		1	
ALQASALNAWR	0	Unmodified	1199.6411	0.64110515	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.118	55.283	2	1.3844E-13	45457	160511_QHF_FH_JSI9i_3	153.05	140.01			0.95429	0.98486	16.418	4	0	Median	1.5085	1.229	NaN	1	0	Median	0.91905	1.0572	NaN	1	0	Median	0.99089	0.91745	NaN	1	0	Median	0.82783	0.8463	NaN	1	0	Median	388150000	190160000	197990000	112860000	42142000	70714000	113020000	59647000	53375000	94219000	50667000	43552000	68056000	37704000	30352000	3497	944	3295	21601;21602;21603;21604	29416;29417;29418;29419;29420;29421	29419			6	
ALQATVGNSYK	1	Unmodified	1150.5982	0.59823728	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.99	7	4	4				3	4		5	5	6	6	28.981	25.686	2	1.7725E-18	22694	160511_QHF_FH_JSI10i_1	166.19	122.38			0.94428	0.95022	31.648	20	6	Median	1.0003	0.8378	17.472	4	1	Median	0.78295	0.91465	14.017	5	0	Median	0.781	0.7514	48.736	5	2	Median	0.9669	1.0694	29.373	6	3	Median	6305800000	3593200000	2712500000	907630000	456770000	450860000	1336800000	789300000	547530000	2022600000	1242000000	780620000	2038600000	1105200000	933490000	3498	996	3296	21605;21606;21607;21608;21609;21610;21611;21612;21613;21614;21615;21616;21617;21618;21619;21620;21621;21622;21623;21624;21625;21626	29422;29423;29424;29425;29426;29427;29428;29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450;29451;29452	29433			31	
ALQDEWDAVMLHSFTLR	0	Oxidation (M)	2046.9833	0.98331066	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	1	0			By MS/MS	By MS/MS	6.25	5.63			3						1			1	3	86.592	84.166	3	2.5883E-05	39730	160513_QHF_FH_JSI12Kac_6	86.005	76.599			0.88855	0.94498	15.301	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4573	1.3908	NaN	1	0	Median	0.9252	0.98524	13.248	3	0	Plateau	130980000	57264000	73716000	0	0	0	0	0	0	26480000	10453000	16027000	104500000	46811000	57689000	3499	5426	3297	21627;21628;21629;21630	29453;29454;29455;29456;29457;29458	29457		2654	6	
ALQDEWDAVMLHSFTLR	0	Unmodified	2030.9884	0.98839604	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.81		5	3						7	3	4	3	5	96.281	92.184	2;3	6.3724E-70	44045	160513_QHF_FH_JSI12Kac_6	213.34	191.29			1.1056	1.1234	6.2217	15	0	Median	1.3139	1.1118	7.2868	3	0	Plateau	0.9305	1.1345	6.6387	4	0	Median	1.1327	1.0769	6.5027	3	0	Plateau	1.1056	1.1714	4.8732	5	0	Median	6048200000	2892500000	3155700000	878040000	376460000	501590000	1776400000	875650000	900770000	1657800000	789940000	867890000	1735900000	850450000	885470000	3500	5426	3297	21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645	29459;29460;29461;29462;29463;29464;29465;29466;29467;29468;29469;29470;29471;29472;29473;29474;29475	29474			17	
ALQDIQK	1	Unmodified	814.45487	0.45486751	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.789	16.331	2	0.040857	14049	160511_QHF_FH_JSI12i_1	49.358	18.069			4.4407	4.6907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4407	4.6907	NaN	1	1	Median	37717000	7802900	29914000	0	0	0	0	0	0	0	0	0	37717000	7802900	29914000	3501	2627	3298	21646	29476	29476			1	
ALQDLENAASGDAAVHQR	0	Unmodified	1864.9028	0.90275216	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	45.531	45.129	3	6.163E-12	39690	160511_QHF_FH_JSI10i_2	123.41	95.799			1.0166	0.91095	10.337	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75795	0.91095	NaN	1	1	Median	0.90412	0.85797	NaN	1	0	Median	1.0217	1.0493	NaN	1	0	Median	270310000	139250000	131060000	0	0	0	74241000	50510000	23731000	83676000	44772000	38904000	112390000	43969000	68425000	3502	4189	3299	21647;21648;21649	29477;29478;29479	29478			3	
ALQDLENAASGDATVR	0	Unmodified	1629.7958	0.79582747	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		53.281	52.483	2	8.464E-07	46583	160511_QHF_FH_JSI9i_1	162.52	135.54			0.67731	0.70732	54.121	4	2	Median	0.96767	0.7982	89.513	2	1	Median	0.49727	0.59243	NaN	1	0	Median	0.89227	0.8445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	284390000	131010000	153380000	157760000	63195000	94565000	60645000	32339000	28306000	65982000	35477000	30505000	0	0	0	3503	4921	3300	21650;21651;21652;21653	29480;29481;29482;29483	29483			4	
ALQDLGLR	0	Unmodified	884.50797	0.50796571	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			44.89	43.88	2	0.021648	38697	160511_QHF_FH_JSI10i_2	55.531	27.108			2.1913	2.2391	66.727	2	2	Median	4.2023	3.5891	NaN	1	1	Median	1.1427	1.3969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213980000	43263000	170720000	151720000	20103000	131620000	62263000	23160000	39103000	0	0	0	0	0	0	3504	739	3301	21654;21655	29484;29485	29485			2	
ALQDLQLDQGNQK	1	Unmodified	1469.7474	0.74742071	4912	Q9NQ48	LZTFL1	Leucine zipper transcription factor-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	42.604	42.038	2	3.9569E-05	37292	160511_QHF_FH_JSI9i_1	79.82	51.807			0.77336	0.7415	22.31	6	6	Median	0.97631	0.78444	NaN	1	1	Median	0.66915	0.78098	27.211	2	2	Median	0.92412	0.89212	34.115	2	2	Median	0.62524	0.66654	NaN	1	1	Median	184640000	107930000	76708000	12891000	7675500	5216000	69682000	46343000	23339000	79778000	39039000	40739000	22285000	14870000	7414500	3505	4912	3302	21656;21657;21658;21659;21660;21661;21662	29486;29487;29488;29489;29490;29491;29492	29492			7	
ALQDMSSTAPPAPQPSTR	0	Unmodified	1853.8942	0.89416131	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.093	40.879	2	0.00078733	36218	160511_QHF_FH_JSI9i_1	71.344	56.925			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6030200	0	6030200	6030200	0	6030200	0	0	0	0	0	0	0	0	0	3506	280	3303	21663	29493	29493			1	
ALQDMSSTAPPAPQPSTRK	1	Unmodified	1981.9891	0.98912432	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			35.27	34.072	3	0.01596	28327	160511_QHF_FH_JSI10i_3	30.428	24.885			0.70657	0.77989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70657	0.77989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39583000	25448000	14135000	0	0	0	39583000	25448000	14135000	0	0	0	0	0	0	3507	280	3304	21664;21665	29494;29495	29494			2	
ALQDQVSIQSADAQEQVEGLLAENNALR	0	Unmodified	3009.5003	0.50032074	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			98.3	98.307	3	1.6404E-05	89188	160511_QHF_FH_JSI10i_1	43.992	41.415			0.94285	1.0643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94285	1.0643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30094000	15108000	14986000	0	0	0	30094000	15108000	14986000	0	0	0	0	0	0	3508	2841	3305	21666	29496	29496			1	
ALQDSNR	0	Unmodified	802.39333	0.39332988	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	4.6386	4.4181	2	0.0037248	2261	160511_QHF_FH_JSI12i_1	88.643	42.272			0.70732	0.72054	6.2923	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71079	0.68918	NaN	1	1	Median	0.70386	0.75332	NaN	1	1	Median	570890000	402820000	168070000	0	0	0	0	0	0	299650000	219510000	80138000	271240000	183300000	87931000	3509	3860	3306	21667;21668;21669;21670;21671	29497;29498;29499;29500;29501	29500			5	
ALQDYRK	1	Unmodified	892.47667	0.47666558	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		10.042	9.6162	2;3	0.0033584	7303	160511_QHF_FH_JSI11i_3	105.39	10.983			1.1591	1.1361	13.751	6	0	Median	1.1591	0.9268	2.2167	2	0	Median	1.0033	1.1361	7.405	2	0	Median	1.312	1.2375	1.8712	2	0	Median	NaN	NaN	NaN	0	0	Median	2117800000	1038900000	1078900000	610180000	258820000	351350000	564820000	304930000	259890000	942840000	475130000	467700000	0	0	0	3510	2006	3307	21672;21673;21674;21675;21676;21677	29502;29503;29504;29505;29506	29502			5	
ALQEAEQSK	1	Unmodified	1002.4982	0.49818889	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	8.4298	8.0804	2	0.01035	5969	160511_QHF_FH_JSI12i_1	88.948	47.446			0.86148	0.94266	17.976	4	0	Median	0.86967	0.72474	NaN	1	0	Median	0.85337	1.0021	NaN	1	0	Median	1.1421	1.0984	NaN	1	0	Median	0.84283	0.8867	NaN	1	0	Median	544860000	327670000	217200000	143420000	73960000	69456000	135040000	80972000	54065000	108680000	57331000	51346000	157730000	115410000	42328000	3511	4165	3308	21678;21679;21680;21681	29507	29507			0	
ALQEENRDLRK	1	Unmodified	1370.7266	0.72662569	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				10.728	10.017	3	0.0077791	7590	160511_QHF_FH_JSI9i_3	57.019	20.491			2.6656	2.1803	NaN	1	1	Median	2.6656	2.1803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89518000	25640000	63878000	89518000	25640000	63878000	0	0	0	0	0	0	0	0	0	3512	2727	3309	21682	29508;29509	29509			2	
ALQEGEGDLSISADR	0	Unmodified	1559.7427	0.74272927	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	45.016	44.253	2	1.4847E-06	39788	160511_QHF_FH_JSI10i_1	146.79	128.04			1.4047	1.3371	28.078	3	3	Median	1.6385	1.3371	NaN	1	1	Median	0.76127	0.88579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4047	1.5148	NaN	1	1	Median	121190000	54583000	66611000	34552000	10702000	23851000	49991000	28150000	21841000	0	0	0	36650000	15731000	20919000	3513	1665	3310	21683;21684;21685	29510;29511;29512	29511			3	
ALQEGEGDLSISADRLSEK	1	Unmodified	2016.9964	0.99637777	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	54.142	53.594	3	7.7389E-05	45797	160511_QHF_FH_JSI12i_2	65.47	49.843			0.67661	0.70768	13.893	6	5	Median	NaN	NaN	NaN	0	0	Median	0.56655	0.69198	NaN	1	1	Median	0.72883	0.70099	14.121	2	2	Median	0.71414	0.72374	17.027	3	2	Median	423540000	253100000	170440000	0	0	0	51443000	33041000	18402000	122090000	67817000	54276000	250010000	152250000	97761000	3514	1665	3311	21686;21687;21688;21689;21690;21691	29513;29514;29515;29516;29517;29518	29514			6	
ALQELQAAQAR	0	Unmodified	1197.6466	0.64658446	3010	Q63ZY3	KANK2	KN motif and ankyrin repeat domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	30.63	29.718	2	0.00092944	24979	160511_QHF_FH_JSI12i_2	80.688	53.726			1.3911	1.4963	35.203	3	2	Median	1.7018	1.4963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80736	0.8165	NaN	1	1	Median	1.3911	1.5083	NaN	1	0	Median	65380000	33210000	32170000	13232000	3118600	10114000	0	0	0	27334000	17459000	9875500	24814000	12633000	12181000	3515	3010	3312	21692;21693;21694	29519;29520;29521	29519			3	
ALQETPTSVLLHHQIGLCYK	1	Unmodified	2307.2045	0.20453683	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	70.008	69.909	3;4	1.2149E-06	62324	160511_QHF_FH_JSI11i_3	87.49	73.759			1.0343	1.04	38.604	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74011	0.71101	44.907	2	1	Median	1.0343	1.04	NaN	1	0	Median	161540000	95537000	66005000	0	0	0	0	0	0	82673000	54636000	28037000	78870000	40901000	37968000	3516	942	3313	21695;21696;21697	29522;29523;29524;29525	29523			3	
ALQEWLLK	1	Unmodified	999.57532	0.57531699	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.944	17.982	2	0.023253	14531	160511_QHF_FH_JSI12i_3	44.692	4.4238			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3517	4602	3314	21698	29526	29526			1	
ALQEYRK	1	Unmodified	906.49232	0.49231565	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.6627	8.1121	2	0.032335	5986	160511_QHF_FH_JSI10i_3	54.549	8.8314			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3518	981	3315	21699	29527	29527			1	
ALQFAQWWK	1	Unmodified	1176.608	0.60801411	2802	Q2TBE0	CWF19L2	CWF19-like protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		83.142	83.142	2	0.0025209	74246	160511_QHF_FH_JSI11i_3	64.567	35.151			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3519	2802	3316	21700	29528	29528			1	
ALQFLEEVK	1	Unmodified	1075.5914	0.59136099	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.67	4	4	5				3	1	1	5	5	3	5	69.267	65.824	2	2.7755E-11	57601	160511_QHF_FH_JSI11i_2	159.37	129.2			0.94634	0.92197	28.637	14	2	Median	0.95703	0.80235	32.828	3	1	Median	0.9833	1.1713	28.416	4	1	Median	0.78461	0.78097	17.458	3	0	Plateau	0.81835	0.86268	32.251	4	0	Median	6303400000	3311100000	2992300000	1090000000	505470000	584480000	1751000000	976360000	774670000	1941300000	1071400000	869850000	1521100000	757840000	763310000	3520	1494	3317	21701;21702;21703;21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718	29529;29530;29531;29532;29533;29534;29535;29536;29537;29538;29539;29540;29541;29542;29543;29544;29545;29546;29547;29548;29549;29550;29551;29552;29553;29554	29546			26	
ALQFLKEQR	1	Acetyl (K)	1173.6506	0.6506072	2162;4665;995	Q01082;Q9H254;P11277	SPTBN1;SPTBN4;SPTB	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 4;Spectrin beta chain, erythrocytic	no	no	1	0	0	1			By MS/MS		16	0									1			1		63.049	53.35	2	0.013476	28896	160513_QHF_FH_JSI11Kac_6	68.016	27.949			0.36347	0.3616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36347	0.3616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4893100	3884900	1008200	0	0	0	0	0	0	4893100	3884900	1008200	0	0	0	3521	2162;4665;995	3318	21719	29555	29555	788		1	
ALQFPPEGWLR	0	Unmodified	1312.6928	0.69280637	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	3	2	88.764	88.5	2	0.00029265	79105	160511_QHF_FH_JSI11i_3	84.213	44.211			0.68432	0.63106	33.142	4	3	Median	0.71272	0.61819	NaN	1	1	Median	0.29185	0.36257	NaN	1	0	Median	0.84206	0.78772	NaN	1	1	Median	0.65706	0.64421	NaN	1	1	Median	108430000	64121000	44313000	14639000	7723400	6915300	19345000	14049000	5295500	28971000	17321000	11650000	45479000	25027000	20452000	3522	4114	3319	21720;21721;21722;21723;21724;21725;21726;21727	29556;29557;29558;29559;29560;29561;29562;29563;29564;29565	29559			10	
ALQGASQIIAEIR	0	Unmodified	1368.7725	0.77251325	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.567	1	6	2							3	4	1	1	73.131	72.41	2;3	6.7588E-24	64334	160511_QHF_FH_JSI10i_2	218.62	178.58			1.2228	1.2943	24.159	8	7	Median	1.4951	1.2943	3.6242	2	2	Median	1.0362	1.2324	34.817	4	3	Median	1.0628	1.0645	NaN	1	1	Median	1.2484	1.3366	NaN	1	1	Median	546680000	258170000	288520000	215680000	86185000	129490000	245830000	129560000	116280000	73033000	34900000	38133000	12137000	7524700	4612500	3523	133	3320	21728;21729;21730;21731;21732;21733;21734;21735;21736	29566;29567;29568;29569;29570;29571;29572;29573;29574;29575	29574			10	
ALQGISGLK	1	Unmodified	885.52837	0.5283668	272	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	2.25	0.433		3	1							1	1		2	39.548	38.659	2	5.6693E-06	33851	160511_QHF_FH_JSI9i_2	114.89	42.661			0.92387	0.98047	12.094	4	0	Median	1.0967	0.9885	NaN	1	0	Median	0.64655	0.77954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92387	0.99183	2.782	2	0	Median	206080000	105110000	100970000	46938000	19851000	27087000	52395000	31566000	20830000	0	0	0	106750000	53692000	53053000	3524	272	3321	21737;21738;21739;21740	29576	29576			1	
ALQGSLGGVEK	1	Unmodified	1057.5768	0.57677356	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.572	30.004	2	0.0016883	27048	160511_QHF_FH_JSI12i_1	61.765	30.535			0.65981	0.69308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65981	0.69308	NaN	1	0	Median	45653000	24182000	21471000	0	0	0	0	0	0	0	0	0	45653000	24182000	21471000	3525	482	3322	21741	29577	29577			1	
ALQHMAAMSSAQIVSATAIHNK	1	Unmodified	2279.1515	0.1514554	1308	P28347	TEAD1	Transcriptional enhancer factor TEF-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.71	5.87			5						2	4	2	1		59.412	56.078	3;4	4.6376E-10	46111	160511_QHF_FH_JSI9i_3	104.86	95.695			0.91606	0.84431	24.16	7	4	Median	1.1363	0.9574	28.938	4	3	Median	0.65853	0.78797	9.7667	2	1	Median	0.85193	0.81308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	311800000	170280000	141520000	146470000	67477000	78992000	128920000	80355000	48564000	36414000	22448000	13967000	0	0	0	3526	1308	3323	21742;21743;21744;21745;21746;21747;21748	29578;29579;29580;29581;29582;29583;29584;29585;29586;29587;29588;29589;29590;29591	29583			14	
ALQHMTDFAIQFNK	1	Unmodified	1662.8188	0.81881152	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	68.541	67.72	2;3	1.5743E-65	60056	160511_QHF_FH_JSI11i_3	230.41	216.82			0.90268	0.90544	17.515	10	0	Median	1.0665	0.97887	21.78	3	0	Plateau	0.88544	1.0241	26.682	3	0	Median	0.94973	0.90544	0.81076	2	0	Median	0.87696	0.89765	13.151	2	0	Median	2779900000	1383900000	1396000000	272380000	135710000	136670000	472860000	282320000	190540000	723090000	362090000	361010000	1311600000	603770000	707810000	3527	2046	3324	21749;21750;21751;21752;21753;21754;21755;21756;21757;21758	29592;29593;29594;29595;29596;29597;29598;29599;29600;29601;29602;29603;29604;29605;29606;29607;29608;29609;29610	29594			19	
ALQHMTDFAIQFNK	1	Oxidation (M)	1678.8137	0.81372614	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	1	0	By MS/MS		By matching	By MS/MS	5.6	5.2			4						1	2		1	2	56.134	53.924	3	0.00094444	44382	160511_QHF_FH_JSI9i_3	65.472	59.691			1.2321	1.248	83.411	5	3	Median	0.62907	0.52172	132.7	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6742	1.5765	NaN	1	0	Median	1.0681	1.1107	16.484	2	1	Median	297020000	142240000	154780000	49355000	28923000	20432000	0	0	0	75089000	30100000	44989000	172570000	83212000	89359000	3528	2046	3324	21759;21760;21761;21762;21763	29611;29612;29613;29614	29611		1711	3	
ALQHSYLHK	1	Unmodified	1095.5825	0.58252764	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	12.037	11.556	2;3	3.1735E-05	9075	160511_QHF_FH_JSI9i_3	114.28	82.347			0.89692	0.8111	13.82	6	1	Median	0.93829	0.7481	7.6867	2	0	Median	0.76213	0.85476	14.722	2	0	Median	0.90302	0.83289	NaN	1	0	Median	0.99856	1.027	NaN	1	1	Median	930430000	432680000	497750000	255420000	119020000	136400000	154690000	77208000	77482000	136240000	59850000	76388000	384080000	176600000	207480000	3529	1007	3325	21764;21765;21766;21767;21768;21769	29615;29616;29617;29618;29619;29620;29621;29622;29623;29624;29625	29623			11	
ALQHSYLHKDEGNPE	1	Acetyl (K)	1778.8224	0.82237657	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.635	29.121	3	0.00038565	16127	160513_QHF_FH_JSI11Kac_6	71.344	65.333			0.31872	0.32024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31872	0.32024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7671200	5445100	2226100	0	0	0	0	0	0	7671200	5445100	2226100	0	0	0	3530	1007	3326	21770	29626	29626	804		1	
ALQIPEVYLR	0	Unmodified	1200.6867	0.68665836	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.29	76.456	2	6.0111E-05	67543	160511_QHF_FH_JSI9i_2	91.069	72.289			0.97698	1.0556	9.7822	4	1	Median	1.1801	1.0178	NaN	1	0	Median	0.88296	1.0948	NaN	1	0	Median	0.914	0.91918	NaN	1	0	Median	1.0443	1.1515	NaN	1	1	Median	352420000	181990000	170430000	79559000	43259000	36300000	80539000	39409000	41130000	117490000	61551000	55939000	74836000	37774000	37063000	3531	2591	3327	21771;21772;21773;21774	29627;29628;29629;29630;29631;29632;29633	29629			7	
ALQIVYGIR	0	Unmodified	1031.6128	0.61276513	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	15.6	0.49								2	3	2	2		1	69.441	59.926	2	0.039782	30125	160513_QHF_FH_JSI10Kac_5	41.652	6.8446			0.8022	0.81825	20.569	5	0	Median	1.0073	0.85176	35.103	2	0	Median	0.74984	0.88395	10.923	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65446	0.70887	NaN	1	0	Median	54893000	32275000	22618000	12599000	5545100	7054000	30897000	20214000	10682000	0	0	0	11397000	6515500	4881300	3532	4557	3328	21775;21776;21777;21778;21779	29634;29635	29634			1	
ALQKYEK	2	Acetyl (K)	920.49673	0.49673232	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				1	2	2	25.806	17.819	2	3.9862E-05	11623	160513_QHF_FH_JSI11Kac_4	129.47	49.997			0.4986	0.55203	45.046	5	0	Median	NaN	NaN	NaN	0	0	Median	0.87849	1.0529	NaN	1	0	Median	0.37321	0.36549	0.51765	2	0	Median	0.56932	0.62084	16.614	2	0	Median	165720000	108420000	57299000	0	0	0	27727000	14626000	13101000	101840000	72746000	29090000	36157000	21050000	15107000	3533	1630	3329	21780;21781;21782;21783;21784	29636;29637;29638;29639	29638	1643		4	
ALQLAQRPVSLLASPWTSPTWLK	1	Unmodified	2562.4322	0.43222858	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.166	85.445	3	1.3966E-37	48711	160513_QHF_FH_JSI10Kac_6	164.65	137.33			0.94967	1.0901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94967	1.0901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111120000	61536000	49584000	0	0	0	111120000	61536000	49584000	0	0	0	0	0	0	3534	802	3330	21785	29640;29641	29641			2	
ALQLEEER	0	Unmodified	986.50327	0.50327426	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	2	2								1		1	2	26.057	25.199	2	0.0010939	21129	160511_QHF_FH_JSI12i_2	94.114	33.355			1.0772	1.178	14.644	4	0	Median	1.7931	1.4947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0666	1.0709	NaN	1	0	Median	1.0748	1.178	6.0529	2	0	Median	1037000000	453040000	584000000	354370000	121920000	232450000	0	0	0	197610000	100220000	97387000	485070000	230900000	254160000	3535	1073	3331	21786;21787;21788;21789	29642;29643;29644;29645	29642			3	
ALQLEEERK	1	Unmodified	1114.5982	0.59823728	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.56	17.484	2	0.032047	14281	160511_QHF_FH_JSI10i_3	47.574	1.8943			1.117	1.3059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.117	1.3059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14923000	8321200	6601400	0	0	0	14923000	8321200	6601400	0	0	0	0	0	0	3536	1073	3332	21790	29646	29646			1	
ALQLEVDRLEELK	1	Unmodified	1554.8617	0.86172219	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							1	1	1	3	72.344	71.659	2;3	0.0016005	62113	160511_QHF_FH_JSI12i_3	78.342	52.683			0.92559	0.97702	18.482	6	0	Median	1.3551	1.1862	NaN	1	0	Median	0.96983	1.1992	NaN	1	0	Median	0.88337	0.87606	NaN	1	0	Median	1.0836	1.0766	17.223	3	0	Plateau	224780000	113850000	110930000	18591000	7409200	11182000	29352000	18829000	10523000	29782000	10169000	19613000	147060000	77444000	69611000	3537	351	3333	21791;21792;21793;21794;21795;21796	29647;29648;29649	29648			3	
ALQLLDEVLHTMPIADPQPLD	0	Unmodified	2328.2035	0.20353377	2423	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.68	102.51	3	0.0031133	88488	160511_QHF_FH_JSI12i_2	39.659	30.84			1.473	1.6561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.473	1.6561	NaN	1	0	Median	90980000	33520000	57460000	0	0	0	0	0	0	0	0	0	90980000	33520000	57460000	3538	2423	3334	21797	29650	29650			1	
ALQLLHCFPLDIR	0	Unmodified	1594.8654	0.86536778	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.295	91.229	3	0.012438	79174	160511_QHF_FH_JSI12i_3	38.279	32.407			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3539	5	3335	21798	29651	29651			1	
ALQLLQMYYEGR	0	Unmodified	1483.7493	0.74933497	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		83.311	82.358	2	8.2994E-05	73544	160511_QHF_FH_JSI11i_3	85.355	50.976			0.84081	0.85351	43.139	4	3	Median	0.91821	0.76588	58.312	2	1	Median	1.012	1.1912	NaN	1	1	Median	0.6986	0.62978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88807000	46884000	41923000	32287000	17863000	14423000	16580000	8317200	8262400	39941000	20704000	19237000	0	0	0	3540	4623	3336	21799;21800;21801;21802;21803	29652;29653;29654;29655;29656	29653			5	
ALQLVQFDCSPELFK	1	Unmodified	1793.9022	0.9022068	3511	Q8N2W9	PIAS4	E3 SUMO-protein ligase PIAS4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.552	82.448	4	0.061167	71567	160511_QHF_FH_JSI12i_3	10.634	0.57711			0.96553	0.94842	19.197	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88073	0.82803	NaN	1	0	Median	1.0585	1.0863	NaN	1	0	Median	208130000	117470000	90667000	0	0	0	0	0	0	95848000	64683000	31165000	112290000	52784000	59502000	3541	3511	3337	21804;21805	29657	29657			1	
ALQMLLSQPVTYQAFR	0	Unmodified	1864.9869	0.98693948	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							2			1	92.216	92.173	2	0.00075097	81198	160511_QHF_FH_JSI9i_2	78.096	65.116			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7025400	7025400	0	0	0	0	0	0	0	0	0	0	7025400	7025400	0	3542	4519	3338	21806;21807;21808	29658;29659;29660	29659			3	
ALQNAVTTFVNR	0	Unmodified	1332.715	0.71499837	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	56.649	55.77	2	6.9631E-16	45697	160511_QHF_FH_JSI9i_3	185.14	154.06			0.94631	0.99872	16.209	7	3	Median	1.3334	1.137	18.342	2	0	Median	0.87519	1.0524	19.279	3	2	Median	0.94631	0.88406	NaN	1	0	Median	0.94174	0.95879	NaN	1	1	Median	405100000	185800000	219300000	146120000	56862000	89258000	181970000	87932000	94039000	43468000	22388000	21079000	33543000	18617000	14926000	3543	225	3339	21809;21810;21811;21812;21813;21814;21815;21816	29661;29662;29663;29664;29665;29666;29667;29668;29669;29670;29671	29665			10	
ALQPIVSEEEWAHTK	1	Unmodified	1736.8733	0.87334951	1555	P43155	CRAT	Carnitine O-acetyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.477	57.223	3	0.0020032	49223	160511_QHF_FH_JSI12i_3	50.608	41.326			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3544	1555	3340	21817	29672	29672			1	
ALQPLEEGEDEEK	1	Unmodified	1485.6835	0.68348305	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	39.792	35.552	2	6.8239E-06	31777	160511_QHF_FH_JSI11i_1	137.89	96.447			0.9149	0.82304	21.686	7	1	Median	0.99665	0.82304	NaN	1	0	Median	0.70302	0.81577	39.575	2	1	Median	0.8649	0.84619	15.28	2	0	Median	0.80599	0.85502	31.537	2	0	Median	813640000	424520000	389110000	168300000	76021000	92275000	217220000	121430000	95785000	259050000	130990000	128060000	169080000	96077000	72998000	3545	2573	3341	21818;21819;21820;21821;21822;21823;21824	29673;29674;29675;29676;29677;29678;29679;29680	29673			8	
ALQQEQEIEQR	0	Unmodified	1370.679	0.6790068	3813;3386	Q86YP4;Q8WXI9	GATAD2A;GATAD2B	Transcriptional repressor p66-alpha;Transcriptional repressor p66-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.506	21.972	2	1.3783E-47	19064	160511_QHF_FH_JSI10i_1	212.72	178.47			1.0194	0.9944	10.634	4	0	Median	1.0301	0.85191	NaN	1	0	Median	0.86289	0.99773	NaN	1	0	Median	1.0089	0.99107	NaN	1	0	Median	1.0417	1.1025	NaN	1	0	Median	787440000	387780000	399660000	196620000	88657000	107970000	201670000	110410000	91256000	183510000	91165000	92345000	205640000	97549000	108090000	3546	3386;3813	3342	21825;21826;21827;21828	29681;29682;29683;29684;29685;29686;29687	29685			7	
ALQQFLYVQMAK	1	Oxidation (M)	1454.7592	0.75917137	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				75.117	64.59	2	0.024245	33386	160513_QHF_FH_JSI9Kac_5	56.563	31.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3547	3212	3343	21829	29688	29688			1	
ALQQFLYVQMAK	1	Unmodified	1438.7643	0.76425675	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	79.069	78.814	2	0.00015921	68363	160511_QHF_FH_JSI12i_3	138.98	117.6			0.95944	0.96913	21.571	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95944	0.96913	21.571	2	2	Median	111620000	55448000	56176000	0	0	0	0	0	0	0	0	0	111620000	55448000	56176000	3548	3212	3343	21830;21831	29689;29690	29689			2	
ALQQHLCVVQLTR	0	Unmodified	1564.8508	0.85078035	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	59.578	49.691	3	0.037109	26001	160513_QHF_FH_JSI12Kac_6	31.389	18.829			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3549	2592	3344	21832	29691	29691			1	
ALQQLLFPGK	1	Unmodified	1113.6546	0.65462995	3769	Q8WUX1	SLC38A5	Sodium-coupled neutral amino acid transporter 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.8	0.4		1	4							2	1	1	1	71.282	70.464	2	6.3053E-11	61037	160511_QHF_FH_JSI12i_3	145.63	137.21			1.0196	1.008	12.595	5	0	Median	1.1139	0.93546	10.568	2	0	Median	0.96259	1.0655	NaN	1	0	Median	0.99468	0.93952	NaN	1	0	Median	1.197	1.2094	NaN	1	0	Median	323260000	152570000	170680000	43662000	21081000	22581000	30368000	17061000	13307000	84534000	34065000	50469000	164690000	80365000	84326000	3550	3769	3345	21833;21834;21835;21836;21837	29692;29693;29694;29695	29695			1	
ALQQNGAPGIAK	1	Unmodified	1166.6408	0.6407708	4488	Q9BW60	ELOVL1	Elongation of very long chain fatty acids protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			2	3	4	2	24.874	23.301	2	7.629E-08	20268	160511_QHF_FH_JSI10i_1	138.1	117.77			1.139	1.1435	26.429	10	4	Median	1.1175	0.93192	28.233	2	0	Median	1.1929	1.3632	40.418	3	2	Median	1.0713	1.0384	9.276	3	1	Median	1.2436	1.3473	22.502	2	1	Median	711430000	388880000	322550000	205430000	109680000	95743000	147470000	75566000	71905000	183170000	118450000	64716000	175370000	85178000	90189000	3551	4488	3346	21838;21839;21840;21841;21842;21843;21844;21845;21846;21847;21848	29696;29697;29698;29699;29700;29701;29702;29703;29704;29705;29706;29707;29708;29709	29700			14	
ALQQQQQQQQQK	1	Unmodified	1482.7539	0.75390307	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.2626	5.6561	2	1.5885E-53	3435	160511_QHF_FH_JSI9i_1	221.94	174.74			1.3044	1.0484	NaN	1	0	Median	1.3044	1.0484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59933000	27613000	32319000	59933000	27613000	32319000	0	0	0	0	0	0	0	0	0	3552	3172	3347	21849	29710	29710			1	
ALQQVIQDYTTPPNEELSR	0	Unmodified	2201.0964	0.096426166	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	74.146	73.581	3	0.010597	65452	160511_QHF_FH_JSI9i_1	29.384	21.58			0.92296	0.96371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92296	0.96371	NaN	1	1	Median	29356000	12821000	16535000	0	0	0	0	0	0	0	0	0	29356000	12821000	16535000	3553	5320	3348	21850;21851	29711;29712	29712			2	
ALQQVQEKEVR	1	Acetyl (K)	1368.7361	0.73612775	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		40.396	30.469	2	0.003045	18536	160513_QHF_FH_JSI11Kac_4	76.465	40.521			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	653430	653430	0	0	0	0	0	0	0	653430	653430	0	0	0	0	3554	2587	3349	21852	29713	29713	2569		1	
ALQQYTLEPSEK	1	Unmodified	1405.7089	0.70890994	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.57	5	1					2			1	3	1	3	44.68	41.232	2	8.3171E-23	36977	160511_QHF_FH_JSI10i_1	175.86	90.13			0.88788	0.97552	17.153	7	2	Median	1.0785	0.87582	NaN	1	0	Median	0.7499	0.85566	31.275	2	0	Median	1.0558	1.0263	NaN	1	0	Median	0.88788	0.97552	13.858	3	2	Median	1154100000	655230000	498870000	226650000	130500000	96149000	290260000	183940000	106330000	293900000	143720000	150180000	343290000	197080000	146220000	3555	5708	3350	21853;21854;21855;21856;21857;21858;21859;21860	29714;29715;29716;29717;29718;29719;29720;29721;29722;29723;29724;29725;29726;29727	29722			14	
ALQQYTLEPSEKPFDLK	2	Unmodified	2006.0361	0.03605774	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	68.608	68.086	3	8.7486E-06	58672	160511_QHF_FH_JSI12i_3	95.767	72.667			0.74293	0.78904	15.932	8	4	Median	0.90614	0.76842	NaN	1	0	Median	0.63759	0.78755	NaN	1	0	Median	0.69818	0.70605	15.286	3	2	Median	0.91284	0.94236	19.23	3	2	Plateau	2202600000	1150300000	1052300000	139550000	72744000	66809000	208680000	117650000	91027000	856430000	470350000	386080000	997960000	489590000	508370000	3556	5708	3351	21861;21862;21863;21864;21865;21866;21867;21868	29728;29729;29730;29731;29732;29733;29734;29735;29736;29737	29736			10	
ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK	1	Unmodified	2964.5417	0.54173204	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			50.923	49.471	3;4	8.313E-23	40454	160511_QHF_FH_JSI9i_3	103.68	100.87			0.97517	0.91697	14.099	4	1	Median	1.1051	0.89678	15.29	3	1	Median	0.85528	0.95794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124700000	57437000	67260000	103050000	44972000	58082000	21644000	12465000	9178800	0	0	0	0	0	0	3557	2604	3352	21869;21870;21871;21872	29738;29739;29740;29741;29742;29743;29744;29745	29742			8	
ALQSGPPQSR	0	Unmodified	1039.5411	0.54105675	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	10.848	10.459	2	0.00028413	8102	160511_QHF_FH_JSI11i_1	98.009	50.266			1.2193	1.1657	35.614	7	1	Median	1.2193	1.1023	NaN	1	0	Median	1.3043	1.5651	42.559	2	0	Median	1.4792	1.4751	33.296	2	0	Median	1.3881	1.4439	61.876	2	1	Median	774080000	282550000	491530000	47455000	21446000	26008000	258670000	102070000	156610000	247630000	72938000	174700000	220310000	86097000	134210000	3558	132	3353	21873;21874;21875;21876;21877;21878;21879	29746;29747;29748;29749	29746			4	
ALQSGQCAGAALDVFTEEPPRDR	0	Unmodified	2487.1812	0.1812352	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	4	3	1	66.757	65.974	3	4.0341E-17	58534	160511_QHF_FH_JSI11i_3	137.23	130.38			1.0871	1.0049	21.911	9	3	Median	1.5665	1.3333	NaN	1	0	Median	1.1771	1.3713	27.1	4	2	Linear	1.0871	1.0049	15.925	3	0	Median	0.91816	0.93582	NaN	1	1	Median	474630000	251930000	222700000	84058000	34472000	49585000	158130000	87532000	70600000	216130000	118930000	97202000	16302000	10989000	5313400	3559	309	3354	21880;21881;21882;21883;21884;21885;21886;21887;21888;21889	29750;29751;29752;29753;29754;29755;29756;29757;29758;29759;29760;29761;29762;29763	29751			14	
ALQSLYTNR	0	Unmodified	1064.5615	0.56145784	3784	Q8WVM7	STAG1	Cohesin subunit SA-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			32.374	30.994	2	0.0033578	25892	160511_QHF_FH_JSI10i_3	70.919	36.111			0.95999	1.1302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95999	1.1302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15905000	6674900	9229800	0	0	0	15905000	6674900	9229800	0	0	0	0	0	0	3560	3784	3355	21890;21891	29764;29765	29764			2	
ALQSPALGLR	0	Unmodified	1024.6029	0.60292873	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.54	2	2	4				1	4	3	4	5	4	3	52.333	46.803	2	8.7219E-34	41381	160511_QHF_FH_JSI11i_3	202.28	110.37			0.98036	1.0559	6.3177	16	3	Median	1.2898	1.0913	7.41	4	0	Median	0.89651	1.0452	5.1723	5	2	Median	0.99079	0.97691	5.6056	4	1	Median	0.96348	1.0666	6.0561	3	0	Median	3449400000	1742600000	1706700000	681890000	318120000	363770000	1044200000	579230000	465020000	804540000	397360000	407180000	918690000	447930000	470750000	3561	1600	3356	21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907	29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796	29767			31	
ALQSQSWK	1	Unmodified	946.48723	0.48723027	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	20.365	19.854	2	0.0017782	16288	160511_QHF_FH_JSI12i_3	97.798	78.438			0.66948	0.61278	43.733	4	1	Median	0.68122	0.57675	NaN	1	0	Median	0.46277	0.57309	NaN	1	0	Median	0.65795	0.65106	NaN	1	0	Median	1.4054	1.4257	NaN	1	1	Median	348150000	185080000	163070000	65061000	29462000	35599000	70007000	46891000	23116000	63952000	35578000	28374000	149130000	73154000	75977000	3562	2997	3357	21908;21909;21910;21911	29797;29798	29798			2	
ALQSVGQIVGEVLK	1	Unmodified	1439.8348	0.83477916	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.807	4	5	8							4	6	4	3	96.65	96.434	2;3	4.4013E-40	84718	160511_QHF_FH_JSI9i_2	240.12	172.22			0.86865	0.85256	20.098	12	1	Median	1.1396	0.7755	11.991	3	0	Plateau	0.67151	0.79487	24.248	5	1	Median	0.87909	0.85334	9.0809	3	0	Median	1.1493	1.1553	NaN	1	0	Median	926410000	423280000	503130000	149890000	64308000	85585000	344880000	180960000	163920000	343320000	141510000	201810000	88318000	36497000	51821000	3563	2006	3358	21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928	29799;29800;29801;29802;29803;29804;29805;29806;29807;29808;29809;29810;29811;29812;29813;29814;29815;29816;29817;29818;29819;29820;29821;29822;29823;29824;29825;29826;29827;29828	29816			30	
ALQSYYEAK	1	Unmodified	1071.5237	0.52367535	4472;2961	Q5TAP6;Q9BVJ6	UTP14C;UTP14A	U3 small nucleolar RNA-associated protein 14 homolog C;U3 small nucleolar RNA-associated protein 14 homolog A	no	no	0	0	0	0			By MS/MS		14	0							1					1		37.349	27.901	2	0.0020166	17065	160513_QHF_FH_JSI11Kac_4	81.296	25.62			1.0253	1.0147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0253	1.0147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4362000	2109800	2252200	0	0	0	0	0	0	4362000	2109800	2252200	0	0	0	3564	2961;4472	3359	21929	29829	29829			1	
ALQTERNELNEK	1	Unmodified	1443.7318	0.73177065	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.618	15.618	2	0.0073379	12808	160511_QHF_FH_JSI11i_3	76.143	28.882			1.5284	1.4492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5284	1.4492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24665000	10546000	14119000	0	0	0	0	0	0	24665000	10546000	14119000	0	0	0	3565	5011	3360	21930	29830;29831	29830			2	
ALQTTGTAK	1	Unmodified	889.4869	0.48689592	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.27	4	2	1			3				3	3	2	2	8.8077	6.1256	2	0.00066253	5862	160511_QHF_FH_JSI10i_2	76.478	33.759			0.8551	0.92885	28.702	9	0	Median	1.052	0.89879	39.921	2	0	Median	0.75058	0.88379	34.392	3	0	Median	1.2413	1.2363	18.906	2	0	Median	0.84443	0.9111	2.728	2	0	Median	1334500000	659630000	674890000	349880000	155930000	193940000	347140000	179360000	167780000	355670000	164360000	191310000	281830000	159970000	121860000	3566	1790	3361	21931;21932;21933;21934;21935;21936;21937;21938;21939;21940	29832;29833;29834;29835;29836;29837;29838;29839;29840	29840			7	
ALQVGCLLR	0	Unmodified	1028.5801	0.5800848	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.91	59.386	2	0.01029	49699	160511_QHF_FH_JSI10i_3	50.127	28.58			0.56513	0.67036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56513	0.67036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55820000	36761000	19059000	0	0	0	55820000	36761000	19059000	0	0	0	0	0	0	3567	726	3362	21941	29841	29841			1	
ALRDAKLDK	2	Acetyl (K)	1070.6084	0.60840804	985;954;1827;1108	P0DMV9;P0DMV8;P11142;P54652;P17066;P48741	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	2	2	27.317	18.465	3	0.0023218	11004	160513_QHF_FH_JSI10Kac_6	82.171	48.21			0.57452	0.63215	79.06	6	1	Median	NaN	NaN	NaN	0	0	Median	1.5799	1.8962	63.681	2	1	Median	0.38528	0.38188	4.0316	2	0	Median	0.57452	0.63215	17.985	2	0	Median	126500000	70592000	55909000	0	0	0	42859000	16473000	26386000	59340000	39869000	19471000	24302000	14250000	10052000	3568	954;985;1827;1108	3363	21942;21943;21944;21945;21946;21947	29842;29843;29844;29845;29846;29847	29847	714;773		6	
ALRDEYIMSK	1	Unmodified	1224.6173	0.61725816	757	O96017	CHEK2	Serine/threonine-protein kinase Chk2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			32.336	30.955	2	0.016077	25836	160511_QHF_FH_JSI10i_3	60.398	38.161			0.96188	1.1232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96188	1.1232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17948000	9508500	8439200	0	0	0	17948000	9508500	8439200	0	0	0	0	0	0	3569	757	3364	21948	29848;29849	29848			2	
ALRETLPAEQDLTTK	1	Unmodified	1684.8996	0.89956426	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	2	5	1	45.859	45.138	2;3	7.2276E-07	37830	160511_QHF_FH_JSI10i_3	131.4	117.98			1.1552	1.1126	12.383	9	3	Median	1.3601	1.106	15.291	3	1	Plateau	0.88065	1.038	11.282	2	0	Median	1.1552	1.065	11.863	3	2	Median	1.1124	1.1126	NaN	1	0	Median	2723500000	1261100000	1462400000	627770000	259610000	368160000	990190000	491810000	498380000	946560000	429640000	516920000	158990000	80094000	78896000	3570	1264	3365	21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959	29850;29851;29852;29853;29854;29855;29856;29857;29858;29859;29860;29861;29862;29863;29864;29865;29866;29867;29868;29869;29870;29871;29872;29873	29859			24	
ALRPDLADK	1	Unmodified	997.55564	0.55564418	3703	Q8TCD5	NT5C	5'(3')-deoxyribonucleotidase, cytosolic type	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		20.902	20.902	2;3	0.0042724	17545	160511_QHF_FH_JSI11i_3	78.149	52.59			0.98224	0.91459	6.6696	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98224	0.91459	6.6696	2	0	Median	NaN	NaN	NaN	0	0	Median	304270000	147930000	156340000	0	0	0	0	0	0	304270000	147930000	156340000	0	0	0	3571	3703	3366	21960;21961	29874;29875	29874			2	
ALRTDYNASVSVPDSSGPER	0	Unmodified	2120.0134	0.013424818	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	5.95	1	5	6					3	2	5	5	4	3	46.703	43	2;3	7.1885E-19	36035	160511_QHF_FH_JSI10i_3	131.54	127.35			1.2955	1.2681	22.742	17	1	Median	1.4686	1.1856	6.2285	5	0	Median	1.1747	1.3671	11.233	5	0	Median	1.6186	1.6291	13.22	4	0	Median	0.82776	0.84654	24.313	3	1	Median	2852800000	1248300000	1604500000	1276200000	560870000	715370000	1234400000	536540000	697900000	232040000	97337000	134700000	110090000	53577000	56515000	3572	1975	3367	21962;21963;21964;21965;21966;21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978	29876;29877;29878;29879;29880;29881;29882;29883;29884;29885;29886;29887;29888;29889;29890;29891;29892;29893;29894;29895;29896;29897;29898	29879			23	
ALRVDNAASEK	1	Unmodified	1172.6149	0.61494998	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	1	By MS/MS	By matching	By matching		2.75	0.433		1	3							2	1	1		13.226	12.646	3	0.00073803	9905	160511_QHF_FH_JSI9i_3	69.03	47.271			1.1295	1.1862	15.151	4	1	Linear	1.1452	0.96005	16.308	2	1	Median	1.0489	1.1986	NaN	1	0	Median	1.2164	1.1564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	394280000	186490000	207800000	133930000	51407000	82523000	152460000	84404000	68058000	107890000	50678000	57215000	0	0	0	3573	1401;4636	3368	21979;21980;21981;21982	29899;29900	29899			2	
ALRYPMAVGLNK	1	Unmodified	1331.7384	0.73837635	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			52.464	50.902	3	0.00059805	42543	160511_QHF_FH_JSI10i_3	73.435	59.177			0.82385	0.95396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82385	0.95396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52962000	28207000	24755000	0	0	0	52962000	28207000	24755000	0	0	0	0	0	0	3574	5604	3369	21983	29901	29901			1	
ALSAEAALAR	0	Unmodified	971.53999	0.53999412	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									2	2	2	36.304	35.677	2	0.0090732	29409	160511_QHF_FH_JSI12i_2	49.418	28.898			0.75595	0.80096	19.787	6	0	Median	NaN	NaN	NaN	0	0	Median	0.56849	0.68631	24.692	2	0	Median	0.8231	0.80096	0	2	0	Median	0.78261	0.82882	30.72	2	0	Median	485050000	278680000	206370000	0	0	0	167720000	104160000	63558000	192650000	108220000	84425000	124690000	66301000	58385000	3575	438	3370	21984;21985;21986;21987;21988;21989	29902;29903	29903			2	
ALSAETESHIYR	0	Unmodified	1375.6732	0.67319314	176	O14569	CYB561D2	Cytochrome b561 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	26.874	26.214	3	0.00047296	22572	160511_QHF_FH_JSI11i_3	66.393	58.668			1.5143	1.4828	17.487	3	0	Median	1.5143	1.282	NaN	1	0	Median	1.1904	1.4828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8484	1.816	NaN	1	0	Median	181630000	78146000	103490000	29206000	12271000	16935000	108920000	50407000	58517000	0	0	0	43501000	15468000	28033000	3576	176	3371	21990;21991;21992;21993	29904;29905	29904			2	
ALSAETESHIYR	0	Acetyl (Protein N-term)	1417.6838	0.68375782	176	O14569	CYB561D2	Cytochrome b561 domain-containing protein 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	46.327	45.377	2	1.7417E-06	38775	160511_QHF_FH_JSI12i_2	119.22	79.287			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3577	176	3371	21994;21995;21996	29906;29907;29908	29906			3	
ALSAFLTCGNWK	1	Unmodified	1366.6704	0.67035637	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		76.778	75.839	2	7.0008E-23	67530	160511_QHF_FH_JSI11i_3	177.06	133.26			0.93601	0.71647	20.972	3	0	Plateau	1.1175	0.92614	NaN	1	0	Median	0.93601	1.0519	NaN	1	0	Median	0.75997	0.69828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146970000	71633000	75337000	46430000	20311000	26120000	31059000	14226000	16832000	69480000	37096000	32385000	0	0	0	3578	648	3372	21997;21998;21999	29909;29910;29911;29912;29913;29914;29915;29916	29911			8	
ALSAIADLLTNEHER	0	Unmodified	1651.8529	0.85294842	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				78.352	76.957	2;3	9.5511E-05	63199	160511_QHF_FH_JSI9i_3	73.802	66.763			1.3761	1.1435	37.73	2	1	Median	1.3761	1.1435	37.73	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87358000	39065000	48293000	87358000	39065000	48293000	0	0	0	0	0	0	0	0	0	3579	442	3373	22000;22001	29917;29918	29917			2	
ALSAVHSPTFCQLACGQDGQLK	1	Unmodified	2387.1362	0.13619927	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.675	61.675	3	7.4689E-23	54780	160511_QHF_FH_JSI11i_3	159.75	152.72			1	0.93366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1	0.93366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38168000	23236000	14931000	0	0	0	0	0	0	38168000	23236000	14931000	0	0	0	3580	3459	3374	22002	29919;29920;29921	29921			3	
ALSAVSTQQK	1	Unmodified	1031.5611	0.56112349	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	1	3	2	17.842	13.972	2	1.2637E-05	11890	160511_QHF_FH_JSI10i_1	102.62	63.83			1.073	1.1513	23.312	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0212	1.2182	NaN	1	0	Median	1.1274	1.088	27.035	3	1	Median	NaN	NaN	NaN	0	0	Median	160640000	80883000	79757000	0	0	0	76998000	37392000	39606000	83642000	43491000	40151000	0	0	0	3581	2270	3375	22003;22004;22005;22006;22007;22008;22009	29922;29923;29924;29925;29926;29927;29928	29926			7	
ALSDADVQK	1	Acetyl (Protein N-term)	987.48729	0.48728985	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	7	4.9	2			3							1	2	2	38.408	32.905	2	0.0010409	30212	160511_QHF_FH_JSI12i_1	69.825	36.274			0.83871	0.92996	74.796	5	1	Median	NaN	NaN	NaN	0	0	Median	0.83871	0.92996	NaN	1	0	Median	0.68637	0.66122	63.638	2	0	Median	0.43923	0.45748	121.51	2	1	Median	150990000	115440000	35545000	0	0	0	1846100	1061000	785120	75808000	50044000	25765000	73332000	64336000	8995500	3582	1455	3376	22010;22011;22012;22013;22014	29929;29930;29931;29932;29933;29934;29935	29930			6	
ALSDDGVSDLEDPTLTPLK	1	Unmodified	1984.9841	0.98408175	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	79.761	79.247	2;3	8.1947E-21	70413	160511_QHF_FH_JSI9i_1	197.14	181.76			0.96234	0.77993	43.664	5	3	Median	1.0801	0.87129	15.665	2	2	Median	0.53055	0.63038	23.308	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6257	1.7352	NaN	1	1	Median	220070000	121450000	98620000	77520000	34561000	42959000	103000000	66546000	36456000	0	0	0	39546000	20341000	19204000	3583	417	3377	22015;22016;22017;22018;22019;22020	29936;29937;29938;29939;29940;29941	29941			6	
ALSDHHIYLEGTLLK	1	Unmodified	1708.9148	0.91482039	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.39	4.83		21	14						6	16	8	8	9	63.099	60.632	2;3;4	1.7731E-116	53249	160511_QHF_FH_JSI11i_3	267.75	232.1			0.95555	0.95648	20.565	31	5	Median	1.2126	1.0293	15.168	8	2	Median	0.88987	1.0614	25.006	8	2	Median	0.99823	0.95843	17.019	8	0	Median	0.83915	0.88924	18.285	7	1	Median	15034000000	8052100000	6981500000	1175100000	508670000	666410000	2328400000	1164200000	1164100000	4893600000	2690300000	2203300000	6636600000	3688900000	2947700000	3584	803	3378	22021;22022;22023;22024;22025;22026;22027;22028;22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061	29942;29943;29944;29945;29946;29947;29948;29949;29950;29951;29952;29953;29954;29955;29956;29957;29958;29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970;29971;29972;29973;29974;29975;29976;29977;29978;29979;29980;29981;29982;29983;29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997;29998;29999;30000;30001;30002;30003;30004;30005;30006;30007;30008;30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024;30025;30026;30027	29950			84	
ALSDHHIYLEGTLLKPNMVTPGHACTQK	2	Unmodified	3130.5692	0.56920912	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.46			12						1	5	5	2	1	72.424	70.564	4;5	3.2397E-13	58416	160511_QHF_FH_JSI11i_3	89.565	79.143			0.6521	0.71188	39.209	12	4	Median	0.66536	0.54576	31.746	4	0	Median	0.66735	0.77431	15.517	5	3	Median	0.55325	0.52212	10.035	2	1	Median	1.7207	1.8584	NaN	1	0	Median	515050000	295470000	219580000	113770000	60397000	53377000	164210000	88261000	75948000	212380000	139080000	73300000	24696000	7737000	16959000	3585	803	3379	22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074	30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041	30029			9	
ALSDHHIYLEGTLLKPNMVTPGHACTQK	2	Acetyl (K)	3172.5798	0.57977381	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1	By matching	By MS/MS		By MS/MS	16	0									4	1	2		1	75.792	68.096	4;5	8.6993E-14	37473	160513_QHF_FH_JSI10Kac_6	104.51	93.094			1.3268	1.4507	34.344	4	0	Median	1.1136	0.93341	NaN	1	0	Median	1.232	1.4507	31.874	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7691	1.8765	NaN	1	0	Median	538740000	267150000	271590000	16818000	8160800	8657600	455690000	233100000	222590000	0	0	0	66228000	25892000	40336000	3586	803	3379	22075;22076;22077;22078	30042;30043;30044;30045	30044	427		4	
ALSDHHIYLEGTLLKPNMVTPGHACTQK	2	Acetyl (K);Oxidation (M)	3188.5747	0.57468843	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	1	1				By MS/MS	16	0									1				1	72.912	63.381	4	2.3222E-07	33181	160513_QHF_FH_JSI12Kac_6	91.722	83.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7580900	0	7580900	0	0	0	0	0	0	0	0	0	7580900	0	7580900	3587	803	3379	22079	30046	30046	427	315	1	
ALSDHHVYLEGTLLK	1	Unmodified	1694.8992	0.89917033	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	58.329	58.154	2;3;4	4.8775E-05	47366	160511_QHF_FH_JSI12i_3	87.519	75.828			0.40785	0.40521	54.695	6	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76157	0.72078	58.267	2	1	Median	0.29611	0.30408	38.183	4	2	Median	946580000	712140000	234440000	0	0	0	0	0	0	274380000	192060000	82323000	672200000	520090000	152120000	3588	944	3380	22080;22081;22082;22083;22084;22085	30047;30048;30049;30050;30051;30052;30053	30049			6	
ALSEALTELGYK	1	Unmodified	1293.6816	0.68163256	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	2	3	3	69.293	68.52	2	1.0952E-15	59946	160511_QHF_FH_JSI11i_2	143.89	111.57			1.0886	1.1464	44.846	8	7	Median	1.1473	0.97785	NaN	1	1	Median	0.56046	0.67312	84.861	2	2	Median	1.2809	1.2796	35.586	2	1	Median	1.0731	1.2261	11.328	3	3	Plateau	895540000	562710000	332830000	206690000	151010000	55677000	241260000	174490000	66774000	206410000	108650000	97766000	241180000	128570000	112610000	3589	1414	3381	22086;22087;22088;22089;22090;22091;22092;22093;22094	30054;30055;30056;30057;30058;30059;30060;30061;30062;30063;30064	30063			11	
ALSEAQAR	0	Unmodified	844.44028	0.44028008	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.5347	7.9104	2	0.044706	5656	160511_QHF_FH_JSI12i_2	47.082	15.792			1.0634	1.1854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.1854	NaN	1	1	Median	84639000	40717000	43921000	0	0	0	0	0	0	0	0	0	84639000	40717000	43921000	3590	2732	3382	22095	30065	30065			1	
ALSEFAALMNTER	0	Unmodified	1451.7079	0.70786408	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	78.908	77.945	2	1.2372E-12	68524	160511_QHF_FH_JSI11i_2	125.74	91.354			0.48943	0.48286	17.858	2	2	Median	0.4912	0.42558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48767	0.54785	NaN	1	1	Median	236280000	170110000	66164000	186390000	128210000	58179000	0	0	0	0	0	0	49887000	41902000	7985000	3591	3173	3383	22096;22097;22098;22099	30066;30067;30068;30069	30069			4	
ALSEIAGMTLPYDTLDQVR	0	Unmodified	2092.0511	0.051055878	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	98.795	98.651	2;3	1.6361E-18	86460	160511_QHF_FH_JSI9i_2	167.14	143.39			0.86883	0.85096	18.648	8	5	Median	0.96888	0.83848	NaN	1	0	Median	0.92354	1.1068	37.018	2	2	Median	0.87047	0.90669	8.6901	3	2	Median	0.80671	0.84642	0.60228	2	1	Median	147230000	83792000	63443000	14030000	6854100	7176000	39740000	19000000	20740000	47990000	31516000	16474000	45475000	26422000	19053000	3592	1306	3384	22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110	30070;30071;30072;30073;30074;30075;30076;30077;30078;30079;30080;30081;30082;30083;30084;30085	30078			16	
ALSELAALCYLIAFQVPRPK	1	Unmodified	2259.2449	0.24494508	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		1	2	97.216	87.916	3;4	2.4321E-24	48098	160513_QHF_FH_JSI12Kac_6	203.89	171.74			1.1403	0.98762	35.095	5	2	Median	1.1203	0.96898	2.6945	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82724	0.78276	NaN	1	0	Median	1.5798	1.6778	1.0527	2	1	Median	359320000	152640000	206680000	116560000	48685000	67877000	0	0	0	80326000	49812000	30514000	162430000	54140000	108290000	3593	1685;31;191	3385	22111;22112;22113;22114;22115	30086;30087;30088;30089	30089			4	
ALSETVVEESDPKPAFSK	2	Unmodified	1932.968	0.96803775	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	51.164	51.046	3	0.00013311	45090	160511_QHF_FH_JSI11i_3	64.565	55.623			0.97162	0.92663	11.202	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95065	0.85607	NaN	1	0	Median	0.99305	1.003	NaN	1	0	Median	89252000	47631000	41621000	0	0	0	0	0	0	33732000	16066000	17666000	55520000	31565000	23955000	3594	3428	3386	22116;22117	30090;30091	30090			2	
ALSEYLAVFAR	0	Unmodified	1238.6659	0.66592292	3885	Q92791	LEPREL4	Synaptonemal complex protein SC65	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			91.086	89.998	2	3.8019E-05	75176	160511_QHF_FH_JSI10i_3	104.2	75.114			1.0285	0.97538	25.901	2	1	Median	1.4578	1.1714	NaN	1	0	Median	0.72569	0.81214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44396000	21452000	22944000	24267000	9931500	14335000	20130000	11521000	8608700	0	0	0	0	0	0	3595	3885	3387	22118;22119;22120	30092;30093;30094	30092			3	
ALSFLGFSAPTPIQALTLAPAIR	0	Unmodified	2354.3362	0.33620293	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.686	90.596	3	4.7761E-14	51505	160513_QHF_FH_JSI9Kac_6	112.58	97.967			0.76802	1.0063	22.111	3	1	Plateau	1.1768	1.0063	NaN	1	0	Median	0.92591	1.097	NaN	1	0	Median	0.76802	0.72165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	329910000	203000000	126910000	44425000	20001000	24423000	78412000	44486000	33926000	207070000	138510000	68563000	0	0	0	3596	4603	3388	22121;22122;22123	30095;30096;30097	30096			3	
ALSFTGSALAALVK	1	Unmodified	1347.7762	0.77620165	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	95.956	95.644	2	0.00025132	78033	160511_QHF_FH_JSI9i_3	84.658	69.985			1.0066	0.94837	12.697	4	0	Median	1.1993	1.0116	NaN	1	0	Median	0.71308	0.8254	NaN	1	0	Median	1.1801	1.0953	NaN	1	0	Median	0.85857	0.88911	NaN	1	0	Median	57540000	31303000	26238000	11028000	4987400	6040800	10817000	6672900	4144000	13077000	6994200	6082700	22618000	12648000	9970000	3597	719	3389	22124;22125;22126;22127	30098;30099;30100	30100			3	
ALSGMCNIDTGLTFAAVHCLSGK	1	Unmodified	2422.1443	0.14432111	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		92.42	92.42	3	0.013844	82470	160511_QHF_FH_JSI11i_3	32.146	23.327			0.68719	0.63792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68719	0.63792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16074000	11693000	4380700	0	0	0	0	0	0	16074000	11693000	4380700	0	0	0	3598	4288	3390	22128	30101	30101			1	
ALSGTSPDDVQPGPSVGPPSK	1	Unmodified	1991.98	0.97999942	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	46.324	45.644	2;3	6.0711E-22	40977	160511_QHF_FH_JSI10i_1	200.44	187.94			1.1632	1.1654	17.539	7	0	Median	1.4466	1.1774	17.101	2	0	Median	1.1775	1.3734	23.227	2	0	Median	1.0459	1.0018	4.0145	2	0	Median	1.1632	1.1924	NaN	1	0	Median	412310000	203320000	208990000	123080000	55572000	67505000	134220000	67008000	67208000	107810000	56077000	51736000	47201000	24661000	22540000	3599	5554	3391	22129;22130;22131;22132;22133;22134;22135;22136	30102;30103;30104;30105;30106;30107;30108;30109;30110;30111	30107			9	
ALSGVLEQDRVQSLK	1	Unmodified	1641.905	0.90498399	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		51.263	50.211	3	0.00011302	41937	160511_QHF_FH_JSI10i_3	82.55	62.123			1.0647	1.2787	15.436	3	0	Plateau	1.6068	1.2787	NaN	1	0	Median	1.1153	1.2919	NaN	1	0	Median	1.0647	0.9839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	235370000	113930000	121440000	52122000	20843000	31279000	69906000	34110000	35796000	113340000	58981000	54363000	0	0	0	3600	5610	3392	22137;22138;22139	30112;30113;30114;30115;30116	30113			5	
ALSGYCGFMAANLYAR	0	Unmodified	1763.8123	0.81234593	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		80.176	75.758	2;3	2.6704E-120	39283	160513_QHF_FH_JSI11Kac_6	259.55	245.74			1.1461	1.3625	18.495	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1661	1.3662	0.38513	2	2	Median	1.0425	0.99175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114280000	57974000	56306000	2716500	0	2716500	62210000	31883000	30327000	49353000	26091000	23262000	0	0	0	3601	1804	3393	22140;22141;22142;22143	30117;30118;30119;30120;30121	30118			5	
ALSHKELYER	1	Acetyl (K)	1286.6619	0.66190017	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		34.458	25.553	3	0.0009717	14308	160513_QHF_FH_JSI11Kac_6	67.456	55.591			0.52105	0.56725	11.289	2	0	Median	NaN	NaN	NaN	0	0	Median	0.52449	0.61439	NaN	1	0	Median	0.51764	0.52373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11744000	7364900	4379500	0	0	0	4310100	2520100	1790100	7434300	4844800	2589400	0	0	0	3602	5639	3394	22144;22145	30122	30122	3510		1	
ALSIFNELR	0	Unmodified	1061.5869	0.58694431	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			75.066	73.623	2	0.0087891	61731	160511_QHF_FH_JSI10i_3	51.854	18.058			1.0655	1.0502	43.85	2	0	Median	1.7311	1.4319	NaN	1	0	Median	0.65576	0.7702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32529000	15024000	17505000	17440000	6224200	11216000	15090000	8800300	6289300	0	0	0	0	0	0	3603	5350	3395	22146;22147	30123	30123			1	
ALSIGFETCR	0	Unmodified	1152.5597	0.55974328	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	54.039	53.329	2	0.0029537	46203	160511_QHF_FH_JSI11i_2	71.451	46.313			1.7318	1.8964	46.875	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99485	0.9991	NaN	1	1	Median	2.0683	2.1728	19.242	2	2	Median	392470000	131460000	261010000	0	0	0	0	0	0	99297000	45495000	53802000	293170000	85969000	207200000	3604	1089	3396	22148;22149;22150	30124;30125;30126	30125			3	
ALSILQNVTAEQPYFIEAR	0	Unmodified	2162.1372	0.13716877	3273	Q7Z4L5	TTC21B	Tetratricopeptide repeat protein 21B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.55	103.45	3	0.050634	91133	160511_QHF_FH_JSI11i_2	19.036	3.2703			1.0548	1.0804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0548	1.0804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	227880000	110620000	117260000	0	0	0	0	0	0	227880000	110620000	117260000	0	0	0	3605	3273	3397	22151	30127	30127			1	
ALSINTLVK	1	Unmodified	957.58588	0.58588168	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.8	5.07			1				1	2			2	1	1	66.948	58.516	2	0.014066	31548	160513_QHF_FH_JSI11Kac_5	53.166	16.146			1.0009	1.1291	23.099	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1661	1.3519	5.7644	2	0	Median	0.90331	0.86165	NaN	1	0	Median	0.8953	0.9822	NaN	1	0	Median	38883000	16824000	22059000	0	0	0	28834000	11458000	17376000	6895300	3738700	3156600	3154300	1627700	1526600	3606	2997	3398	22152;22153;22154;22155	30128;30129	30129			1	
ALSITLVQEPPPVSTVVHFK	1	Unmodified	2161.2147	0.21469081	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	95.492	95.225	3	1.3622E-09	82656	160511_QHF_FH_JSI12i_3	112.56	102.9			1.0568	1.0613	6.2209	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84252	1.0248	NaN	1	0	Median	1.2394	1.1565	NaN	1	0	Median	1.0568	1.0613	NaN	1	0	Median	80508000	40402000	40106000	0	0	0	6228900	2775500	3453300	21706000	9529700	12176000	52573000	28097000	24477000	3607	3024	3399	22156;22157;22158	30130;30131;30132;30133;30134;30135	30135			6	
ALSIVESEQDK	1	Unmodified	1217.6139	0.61394692	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.3	34.877	2	0.0023991	29676	160511_QHF_FH_JSI11i_2	61.161	35.602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3608	3117	3400	22159	30136	30136			1	
ALSKHLPSSDSMSLK	2	Acetyl (K)	1641.8396	0.83960654	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	60.847	51.045	3	0.024599	27649	160513_QHF_FH_JSI11Kac_6	44.734	23.177			0.55702	0.58248	57.743	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39308	0.38722	NaN	1	0	Median	0.78932	0.87621	NaN	1	0	Median	35345000	20840000	14505000	0	0	0	0	0	0	25316000	15111000	10205000	10029000	5728500	4300500	3609	602	3401	22160;22161	30137;30138	30137	312		1	
ALSLGTIPSLTR	0	Unmodified	1227.7187	0.71868677	2922	Q5SNT2	TMEM201	Transmembrane protein 201	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			76.924	75.497	2	0.024455	63359	160511_QHF_FH_JSI10i_3	70.1	42.797			0.9447	0.97093	26.288	2	0	Median	1.349	1.1693	NaN	1	0	Median	0.66159	0.80623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12026000	6214400	5812000	5472000	2213600	3258400	6554400	4000800	2553600	0	0	0	0	0	0	3610	2922	3402	22162;22163	30139	30139			0	
ALSLLTLLNVYQK	1	Unmodified	1474.8759	0.87591569	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	97.353	90.597	2	1.0511E-62	49404	160513_QHF_FH_JSI11Kac_6	223.31	187.77			1.3014	1.1548	23.297	5	1	Median	1.365	1.1548	NaN	1	0	Median	1.1087	1.2978	21.486	2	1	Median	1.0208	0.95494	NaN	1	0	Median	1.5724	1.6859	NaN	1	0	Median	550160000	242450000	307710000	142430000	62919000	79514000	126170000	69260000	56909000	192980000	75544000	117430000	88579000	34726000	53854000	3611	5361	3403	22164;22165;22166;22167;22168	30140;30141;30142;30143;30144;30145	30141			5	
ALSMLLNGTPFAFVIDLAALASR	0	Unmodified	2390.3032	0.30318824	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			104.88	97.41	3	7.5196E-38	58691	160513_QHF_FH_JSI10Kac_6	162.86	138.31			1.1392	1.1429	15.156	2	1	Median	1.1977	1.0268	NaN	1	1	Median	1.0837	1.2722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	245750000	129340000	116420000	11408000	4827800	6580400	234340000	124510000	109840000	0	0	0	0	0	0	3612	21	3404	22169;22170	30146;30147	30147			2	
ALSMPLNGLK	1	Acetyl (Protein N-term)	1084.5951	0.59506616	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.392	84.935	2	7.0964E-06	75492	160511_QHF_FH_JSI9i_1	61.999	51.126			1.0542	1.0993	4.2153	4	0	Median	1.3869	1.1252	NaN	1	0	Median	0.94065	1.1175	NaN	1	0	Median	1.0592	1.0259	NaN	1	0	Median	1.0492	1.0814	NaN	1	0	Median	242760000	113310000	129450000	68446000	28115000	40331000	59606000	30930000	28677000	60556000	30168000	30388000	54155000	24097000	30058000	3613	5711	3405	22171;22172;22173;22174	30148;30149;30150;30151;30152;30153;30154	30154			7	
ALSNLESIPGGYNALR	0	Unmodified	1673.8737	0.87368386	5427;4964	Q9UMX0;Q9NRR5	UBQLN1;UBQLN4	Ubiquilin-1;Ubiquilin-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	3	2	71.335	70.67	2;3	8.2895E-52	61885	160511_QHF_FH_JSI11i_2	216.03	176.11			0.90873	0.92269	23.433	8	2	Median	1.0818	0.92463	2.3413	2	1	Median	0.76622	0.93612	NaN	1	0	Median	0.72306	0.73359	27.902	3	1	Median	0.84091	0.95727	39.116	2	0	Median	679410000	391210000	288200000	105450000	49713000	55739000	83675000	46793000	36882000	329730000	204000000	125730000	160550000	90710000	69842000	3614	5427;4964	3406	22175;22176;22177;22178;22179;22180;22181;22182	30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166;30167;30168	30161			14	
ALSNLESIPGGYNALRR	0	Unmodified	1829.9748	0.97479489	5427;4964	Q9UMX0;Q9NRR5	UBQLN1;UBQLN4	Ubiquilin-1;Ubiquilin-4	no	no	0	0	0	1	By MS/MS				3	0			1							1				63.202	61.695	3	0.0014149	50653	160511_QHF_FH_JSI9i_3	56.514	38.15			1.3713	1.1315	NaN	1	1	Median	1.3713	1.1315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27954000	9356400	18597000	27954000	9356400	18597000	0	0	0	0	0	0	0	0	0	3615	5427;4964	3407	22183	30169;30170	30170			2	
ALSNQKYR	1	Acetyl (K)	1020.5352	0.53524309	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		21.404	13.756	2	0.035392	9415	160513_QHF_FH_JSI11Kac_4	54.205	26.68			0.44904	0.43889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44904	0.43889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2898900	1860400	1038500	0	0	0	0	0	0	2898900	1860400	1038500	0	0	0	3616	1532	3408	22184	30171	30171			1	
ALSPLEEWLR	0	Unmodified	1212.6503	0.65027285	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	89.095	88.505	2	3.667E-14	76548	160511_QHF_FH_JSI12i_2	161.92	139.18			1.0433	1.0263	9.3139	8	0	Median	1.371	1.1484	15.366	2	0	Median	0.83802	0.98628	0.57974	2	0	Median	1.0433	1.0242	2.0862	2	0	Median	1.0303	1.0938	9.5416	2	0	Median	1402400000	700300000	702130000	243690000	102390000	141310000	295260000	161520000	133740000	546430000	275350000	271080000	317050000	161040000	156010000	3617	1283	3409	22185;22186;22187;22188;22189;22190;22191;22192	30172;30173;30174;30175;30176;30177;30178;30179;30180;30181;30182;30183;30184;30185;30186;30187;30188	30176			17	
ALSQAAVEEEEEEEEEEEPAQGK	1	Unmodified	2559.0984	0.098395818	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	48.138	47.637	3	1.3433E-10	43048	160511_QHF_FH_JSI11i_1	96.54	92.73			0.94238	1.0721	26.571	3	2	Median	NaN	NaN	NaN	0	0	Median	0.94238	1.0721	NaN	1	1	Median	0.92595	0.90558	NaN	1	0	Median	1.4373	1.5244	NaN	1	1	Median	122250000	69410000	52838000	0	0	0	26242000	17183000	9058400	56734000	39620000	17115000	39272000	12607000	26665000	3618	2904	3410	22193;22194;22195;22196	30189;30190;30191;30192;30193	30191			5	
ALSQGVESVK	1	Unmodified	1016.5502	0.55022446	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	23.35	21.361	2	0.00012983	18252	160511_QHF_FH_JSI9i_1	84.054	58.317			1.081	1.142	14.285	6	0	Median	1.2347	1.0136	NaN	1	0	Median	1.081	1.3004	6.2636	2	0	Median	1.1135	1.1087	20.263	2	0	Median	0.98655	1.0484	NaN	1	0	Median	448150000	194550000	253600000	122830000	45623000	77208000	119300000	57482000	61818000	114680000	47768000	66912000	91336000	43676000	47659000	3619	346	3411	22197;22198;22199;22200;22201;22202;22203	30194;30195;30196;30197;30198;30199;30200	30198			7	
ALSQGVESVKK	2	Unmodified	1144.6452	0.64518747	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	4	2	2	16.346	15.915	2;3	5.8346E-11	12608	160511_QHF_FH_JSI12i_3	141.1	109.33			1.1473	1.0888	71.216	8	5	Median	0.44757	0.37933	NaN	1	1	Median	0.43098	0.51022	109.96	3	3	Plateau	1.1677	1.0888	0.34039	2	1	Median	1.1586	1.1957	1.0452	2	0	Median	1195200000	617960000	577210000	51080000	33108000	17972000	123390000	63778000	59616000	334680000	181650000	153020000	686020000	339420000	346590000	3620	346	3412	22204;22205;22206;22207;22208;22209;22210;22211;22212	30201;30202;30203;30204;30205;30206;30207;30208;30209;30210	30209			10	
ALSQLAEVEEK	1	Unmodified	1215.6347	0.63468237	444;2448	O60749;Q13596	SNX2;SNX1	Sorting nexin-2;Sorting nexin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.94	3	4	1				2			2	2	2	4	47.915	45.149	2	2.3849E-10	25006	160513_QHF_FH_JSI10Kac_4	122.69	67.141			0.45074	0.45324	65.785	10	9	Median	0.51851	0.42793	76.665	2	1	Median	0.74902	0.90073	24.038	2	2	Median	0.45074	0.45324	14.749	2	2	Median	0.16988	0.38532	85.824	4	4	Linear	2795900000	2142800000	653070000	392480000	245760000	146730000	212930000	145100000	67832000	921240000	649800000	271440000	1269200000	1102100000	167070000	3621	444;2448	3413	22213;22214;22215;22216;22217;22218;22219;22220;22221;22222	30211;30212;30213;30214;30215;30216;30217;30218;30219;30220	30214			10	
ALSRQEMQEVQSSR	0	Unmodified	1647.7999	0.79986699	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			24.165	22.877	3	6.4591E-05	18439	160511_QHF_FH_JSI9i_3	84.759	70.73			1.1273	1.1069	54.581	2	0	Median	0.91198	0.75246	NaN	1	0	Median	1.3935	1.6282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111700000	54665000	57038000	68338000	36043000	32295000	43364000	18621000	24743000	0	0	0	0	0	0	3622	1212	3414	22223;22224	30221;30222;30223	30223			3	
ALSSDSILSPAPDAR	0	Unmodified	1498.7627	0.76273643	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.967	52.3	2	1.3454E-12	47369	160511_QHF_FH_JSI11i_1	193.23	149.03			0.80378	0.88643	30.452	4	4	Median	0.59163	0.48796	NaN	1	1	Median	0.76093	0.88373	NaN	1	1	Median	0.94461	0.91682	NaN	1	1	Median	0.84905	0.88913	NaN	1	1	Median	275280000	161280000	114010000	46539000	25534000	21006000	69880000	44512000	25368000	82033000	49251000	32782000	76832000	41981000	34851000	3623	3411	3415	22225;22226;22227;22228	30224;30225;30226;30227	30224			4	
ALSSEGKPYVTK	2	Unmodified	1278.682	0.68196691	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	19.555	19.564	2;3	9.1992E-07	15867	160511_QHF_FH_JSI12i_3	130.94	102.54			1.152	1.1092	5.5886	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.152	1.0676	NaN	1	1	Median	1.1329	1.1498	5.0813	2	0	Median	465750000	215130000	250620000	0	0	0	0	0	0	99579000	53288000	46291000	366170000	161850000	204330000	3624	2470	3416	22229;22230;22231	30228;30229;30230;30231	30230			4	
ALSSLELSSHLAK	1	Unmodified	1354.7456	0.7456298	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	2	2	4	3	51.433	49.987	2;3	7.3283E-23	42637	160511_QHF_FH_JSI12i_3	157.56	139.49			1.0992	1.0892	37.469	10	2	Median	1.6443	1.4204	60.871	2	1	Median	0.57572	0.70079	56.752	2	1	Median	1.1209	1.0565	10.936	3	0	Median	1.1668	1.1819	3.8589	3	0	Median	1935500000	922840000	1012700000	187280000	75860000	111420000	177370000	94438000	82930000	796760000	392550000	404210000	774100000	359990000	414110000	3625	4337	3417	22232;22233;22234;22235;22236;22237;22238;22239;22240;22241;22242	30232;30233;30234;30235;30236;30237;30238;30239;30240;30241;30242;30243;30244;30245;30246	30244			15	
ALSSQHQAR	0	Unmodified	996.51009	0.51009098	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			6						3	5	2	2		4.3423	1.4621	2;3	3.7727E-11	2017	160511_QHF_FH_JSI9i_3	155.75	127.24			0.95667	0.86171	34.05	9	2	Median	1.3652	1.0761	35.77	5	2	Median	0.67277	0.77034	8.8082	2	0	Median	0.7945	0.75724	23.144	2	0	Median	NaN	NaN	NaN	0	0	Median	3121000000	1895900000	1225100000	1431100000	757730000	673340000	1664200000	1124100000	540070000	25747000	14083000	11665000	0	0	0	3626	982	3418	22243;22244;22245;22246;22247;22248;22249;22250;22251	30247;30248;30249;30250;30251;30252;30253;30254;30255;30256;30257;30258;30259	30255			13	
ALSSSKQSSSSR	1	Acetyl (K)	1265.6212	0.62115757	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.4						1	4				2	1	2	11.112	2.9738	2	1.125E-07	4195	160513_QHF_FH_JSI10Kac_4	107.83	96.68			0.74618	0.74039	103.37	3	1	Median	NaN	NaN	NaN	0	0	Median	0.79895	0.9503	NaN	1	0	Median	0.74618	0.74039	NaN	1	0	Median	0.13227	0.14183	NaN	1	1	Median	23932000	15883000	8049500	0	0	0	9743600	6332700	3410900	8750500	4426400	4324100	5438300	5123700	314540	3627	1815	3419	22252;22253;22254;22255;22256	30260;30261;30262;30263;30264;30265	30261	1833		6	
ALSSVGLHMTK	1	Unmodified	1142.6118	0.61177885	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	2	3	2	3	38.623	35.402	2;3	2.3906E-06	29861	160511_QHF_FH_JSI12i_3	112.36	81.068			0.85531	0.8254	38.087	10	6	Median	0.67243	0.55363	61.247	2	1	Median	0.88025	0.67292	46.119	3	3	Plateau	0.71987	0.69248	20.064	2	0	Median	0.98094	0.97469	27.647	3	2	Median	1048000000	585380000	462590000	62331000	39428000	22903000	91302000	55496000	35806000	64170000	35119000	29051000	830160000	455330000	374830000	3628	2604	3420	22257;22258;22259;22260;22261;22262;22263;22264;22265;22266	30266;30267;30268;30269;30270;30271;30272;30273;30274;30275;30276	30273			11	
ALSTDPAAPNLK	1	Unmodified	1196.6401	0.6401021	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	42.495	38.2	2	1.2089E-10	34602	160511_QHF_FH_JSI12i_1	143.03	123.25			0.9338	1.0942	11.238	7	3	Median	1.346	1.0942	NaN	1	1	Median	0.9307	1.1031	1.0398	2	1	Median	0.97827	0.95047	15.169	2	1	Median	0.93665	1.0054	15.985	2	0	Median	1579500000	779680000	799770000	295790000	119840000	175950000	425260000	223670000	201590000	479710000	241890000	237820000	378700000	194290000	184410000	3629	5616	3421	22267;22268;22269;22270;22271;22272;22273	30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287	30279			11	
ALSTFFVENSLR	0	Unmodified	1382.7194	0.71941505	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			79.065	77.679	2	0.0025522	63898	160511_QHF_FH_JSI9i_3	85.355	58.051			0.85933	0.84664	25.18	2	0	Median	1.2247	1.0116	NaN	1	0	Median	0.60298	0.70856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41927000	21887000	20041000	23381000	10102000	13279000	18546000	11784000	6761600	0	0	0	0	0	0	3630	5541	3422	22274;22275	30288;30289;30290	30290			2	
ALSTGEK	1	Unmodified	704.37047	0.37046918	2040	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.08	6	4	3		4	3	3	3	2	4	8	8	8	6.2635	1.5966	2	0.0029926	2387	160513_QHF_FH_JSI10Kac_4	101.64	27.228			0.93778	0.97687	16.175	26	0	Median	1.1504	1.1844	13.12	3	0	Plateau	0.9306	0.98429	22.261	8	0	Median	0.99871	0.97687	13.396	8	0	Median	0.84304	0.9083	10.561	7	0	Median	133760000000	65941000000	67818000000	25153000000	9944200000	15209000000	37101000000	19398000000	17703000000	34646000000	18116000000	16530000000	36860000000	18482000000	18378000000	3631	2040	3423	22276;22277;22278;22279;22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290;22291;22292;22293;22294;22295;22296;22297;22298;22299;22300;22301;22302;22303	30291;30292;30293;30294;30295;30296;30297;30298;30299;30300;30301;30302;30303;30304;30305;30306;30307;30308;30309;30310;30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321;30322;30323	30298			33	
ALSTGEKGFGYK	2	Acetyl (K)	1298.6507	0.65066678	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.957						3	8	6	4	2	6	7	6	53.303	43.107	2;3	1.9944E-75	24526	160513_QHF_FH_JSI12Kac_4	237.36	187.55			0.75691	0.69628	191.98	21	3	Median	0.86759	0.73275	13.42	2	0	Median	1.2232	1.3747	8.7702	6	0	Median	0.31726	0.31429	344.68	7	3	Median	0.57743	0.62596	15.546	6	0	Median	3465000000	2386600000	1078400000	77939000	39227000	38713000	747960000	357600000	390370000	2084100000	1626800000	457250000	555060000	362950000	192120000	3632	2040	3424	22304;22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323;22324	30324;30325;30326;30327;30328;30329;30330;30331;30332;30333;30334;30335;30336;30337;30338;30339;30340;30341;30342;30343;30344;30345;30346;30347;30348;30349;30350;30351;30352;30353;30354	30340	2094;2095		30	
ALSTGEKGFGYKGSCFHR	2	2 Acetyl (K)	2084.9738	0.97380861	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	2	0	0	2			By MS/MS		16	0									1			1		63.817	54.132	3	0.028416	29312	160513_QHF_FH_JSI11Kac_6	48.376	38.454			0.2276	0.22603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2276	0.22603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3451600	3179300	272300	0	0	0	0	0	0	3451600	3179300	272300	0	0	0	3633	2040	3425	22325	30355	30355	2094;2095		1	
ALSTMDLQK	1	Unmodified	1005.5165	0.51648149	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	35.932	35.237	2	3.157E-05	31909	160511_QHF_FH_JSI12i_1	101.72	62.93			1.0032	1.1369	74.959	5	1	Median	0.66872	0.56173	118.81	2	1	Median	0.97988	1.1369	NaN	1	0	Median	1.0032	0.9884	NaN	1	0	Median	1.5403	1.5965	NaN	1	0	Median	833100000	417310000	415790000	230800000	110100000	120700000	208030000	96007000	112030000	225010000	117700000	107310000	169260000	93500000	75756000	3634	4873	3426	22326;22327;22328;22329;22330	30356;30357;30358;30359;30360;30361;30362;30363;30364	30358			9	
ALSTPYIHSLAPIVVEK	1	Unmodified	1837.0349	0.034935528	5211	Q9P2D3	HEATR5B	HEAT repeat-containing protein 5B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.674	77.54	3	9.927E-07	67291	160511_QHF_FH_JSI12i_3	111.22	93.819			1.6984	1.666	1.1326	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7913	1.6527	NaN	1	1	Median	1.6104	1.6794	NaN	1	0	Median	66791000	27881000	38910000	0	0	0	0	0	0	28582000	11514000	17068000	38209000	16367000	21842000	3635	5211	3427	22331;22332	30365;30366;30367	30367			3	
ALSVETEK	1	Unmodified	875.46001	0.46001246	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.33	6.13	2						1				1	1	1	21.147	17.044	2	0.002025	14832	160511_QHF_FH_JSI12i_1	83.206	33.848			0.83414	0.84763	18.12	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97956	0.9635	NaN	1	0	Median	0.71031	0.74569	NaN	1	0	Median	208550000	109830000	98711000	0	0	0	0	0	0	6347400	3108500	3238800	202200000	106730000	95472000	3636	962	3428	22333;22334;22335	30368;30369;30370	30368			3	
ALSVGLVK	1	Unmodified	785.50109	0.50108942	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	6.08	3	4	3				2	2	1	3	3	5	4	47.338	43.393	2	0.0032965	37850	160511_QHF_FH_JSI11i_3	73.616	34.398			1.2947	1.2935	21.959	15	0	Median	1.8896	1.619	21.963	3	0	Median	1.1378	1.2868	18.668	3	0	Median	1.2947	1.2935	17.292	5	0	Median	1.1927	1.296	29.002	4	0	Median	1233900000	528140000	705740000	200510000	76613000	123890000	216910000	96468000	120440000	420700000	176700000	244000000	395760000	178360000	217410000	3637	5441	3429	22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346;22347;22348;22349;22350	30371;30372;30373;30374;30375;30376;30377;30378;30379;30380;30381	30371			10	
ALSVGNIDDALQCYSEAIK	1	Unmodified	2065.999	0.99902031	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	8	6								1	4	4	5	99.284	99.14	2;3	1.3457E-53	89606	160511_QHF_FH_JSI10i_1	211.7	189.47			0.86008	1.0014	21.709	13	2	Median	1.2682	1.1219	NaN	1	1	Median	0.94709	1.1169	21.58	4	1	Linear	0.79491	0.76707	3.6441	4	0	Median	1.0708	1.1364	12.57	4	0	Median	453970000	245590000	208380000	5148800	1793400	3355400	158460000	89862000	68598000	159840000	91776000	68062000	130520000	62157000	68366000	3638	1386	3430	22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364	30382;30383;30384;30385;30386;30387;30388;30389;30390;30391;30392;30393;30394;30395;30396;30397;30398;30399;30400;30401;30402;30403	30396			21	
ALSVYGLPIR	0	Unmodified	1087.639	0.63897988	4756	Q9H6W3	NO66	Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		72.303	71.576	2	8.6378E-05	62717	160511_QHF_FH_JSI11i_2	98.629	56.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3639	4756	3431	22365;22366	30404;30405	30405			2	
ALSYLYEK	1	Unmodified	985.51205	0.51204804	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	43.157	42.272	2	0.0027947	36218	160511_QHF_FH_JSI11i_2	84.743	84.743			1.0122	0.97759	49.257	6	4	Median	1.0746	0.91606	NaN	1	0	Median	0.8063	0.96987	81.129	2	2	Median	1.1544	1.1416	71.602	2	2	Median	0.95338	1.0433	NaN	1	0	Median	351410000	172660000	178750000	60118000	29738000	30380000	104670000	49770000	54897000	125780000	59682000	66097000	60845000	33469000	27376000	3640	3176	3432	22367;22368;22369;22370;22371;22372	30406;30407;30408;30409;30410;30411;30412;30413	30410			8	
ALTAEIVK	1	Unmodified	843.50657	0.50656873	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.43	4	4	3				1			3	3	2	4	37.217	35.598	2	0.00098846	31238	160511_QHF_FH_JSI10i_2	95.531	44.565			0.86336	0.95325	27.172	12	0	Median	1.1757	0.97042	48.44	3	0	Median	0.74167	0.88238	8.9894	3	0	Plateau	0.84135	0.84247	24.236	2	0	Median	0.87392	0.97619	26.392	4	0	Median	2343900000	1230100000	1113800000	454450000	193240000	261210000	630420000	359290000	271130000	690030000	373130000	316910000	569040000	304440000	264600000	3641	1459	3433	22373;22374;22375;22376;22377;22378;22379;22380;22381;22382;22383;22384	30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426;30427	30426			14	
ALTAHLYSLLQTQHALGDAFADLSQK	1	Unmodified	2811.4555	0.45554279	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.439	83.718	4	4.0214E-53	47428	160513_QHF_FH_JSI10Kac_6	178.15	171.2			0.68765	0.81061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68765	0.81061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132990000	76013000	56976000	0	0	0	132990000	76013000	56976000	0	0	0	0	0	0	3642	1795	3434	22385	30428;30429	30429			2	
ALTALFK	1	Unmodified	762.46398	0.46397563	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	57.784	54.114	2	0.0028642	45366	160511_QHF_FH_JSI10i_3	108.24	63.627			0.9323	0.98487	8.7165	12	0	Median	1.2529	1.0114	15.746	3	0	Median	0.87611	0.99856	6.6027	3	0	Median	1.0479	0.97103	5.681	3	0	Plateau	0.9215	1.0032	6.261	3	0	Median	4259000000	2134000000	2125100000	895610000	447870000	447740000	808520000	426380000	382150000	962810000	498400000	464410000	1592100000	761330000	830780000	3643	5227	3435	22386;22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397	30430;30431;30432;30433;30434;30435;30436;30437;30438;30439;30440;30441;30442;30443;30444;30445;30446;30447;30448;30449;30450;30451;30452;30453	30437			24	
ALTALGLAVPR	0	Unmodified	1080.6655	0.66552898	4482	Q9BVQ7	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			5							1	1	2	1	69.825	69.175	2	7.5231E-05	60850	160511_QHF_FH_JSI11i_3	91.318	23.104			1.034	1.0654	11.409	5	0	Median	1.5115	1.28	NaN	1	0	Median	0.92628	1.0654	NaN	1	0	Median	1.0698	0.99145	9.1757	2	0	Median	1.034	1.0703	NaN	1	0	Median	99262000	48252000	51010000	11436000	4042500	7393700	14484000	7789900	6693800	48220000	23253000	24968000	25122000	13167000	11955000	3644	4482	3436	22398;22399;22400;22401;22402	30454;30455;30456;30457;30458	30454			5	
ALTALLK	1	Unmodified	728.47963	0.47962569	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	48.236	47.415	2	0.0095616	41593	160511_QHF_FH_JSI11i_3	78.616	18.257			0.9107	0.96196	15.332	7	0	Median	1.1027	0.96196	NaN	1	0	Median	0.79602	0.97883	2.6567	2	0	Median	1.229	1.185	25.376	2	0	Median	0.90304	0.92079	5.9049	2	0	Median	536760000	257830000	278930000	33605000	14412000	19193000	110090000	57115000	52979000	149170000	68351000	80820000	243890000	117950000	125940000	3645	4417	3437	22403;22404;22405;22406;22407;22408;22409	30459;30460;30461;30462;30463;30464	30459			6	
ALTCFSVLFLPK	1	Unmodified	1394.7632	0.76319412	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	92.118	82.711	2	1.0668E-15	46514	160513_QHF_FH_JSI11Kac_6	161.17	128.85			1.2852	1.2738	16.316	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2052	1.135	NaN	1	0	Median	1.3706	1.4296	NaN	1	0	Median	111170000	41722000	69443000	0	0	0	0	0	0	75956000	28190000	47766000	35209000	13533000	21677000	3646	5332	3438	22410;22411	30465;30466;30467	30466			3	
ALTDFIQEEFQHLK	1	Unmodified	1717.8675	0.86753585	2747	Q16635	TAZ	Tafazzin	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	99.988	99.997	3	0.00012565	86637	160511_QHF_FH_JSI12i_3	70.68	61.644			0.68532	0.65542	44.776	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50725	0.47755	NaN	1	0	Median	0.9259	0.89955	NaN	1	0	Median	56165000	29253000	26912000	0	0	0	0	0	0	12116000	7805700	4309900	44049000	21447000	22602000	3647	2747	3439	22412;22413	30468	30468			1	
ALTDSFR	0	Unmodified	808.40792	0.40791731	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.75	0.829	4	2	2							1	2	3	2	27.463	27.006	2	0.016662	22573	160511_QHF_FH_JSI11i_2	62.717	33.379			1.1263	1.2505	36.033	8	1	Median	2.008	1.6238	NaN	1	0	Median	0.81813	0.9776	37.726	2	0	Median	1.0465	1.0627	35.666	3	1	Median	1.5162	1.5478	33.068	2	0	Median	1201100000	563860000	637280000	26605000	11029000	15576000	346890000	156080000	190810000	591400000	289740000	301660000	236240000	107010000	129230000	3648	1361	3440	22414;22415;22416;22417;22418;22419;22420;22421	30469;30470;30471;30472;30473;30474	30472			6	
ALTELFFVTENR	0	Unmodified	1438.7456	0.7456298	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.105	89.017	2	4.6979E-06	77267	160511_QHF_FH_JSI12i_3	119.53	99.767			0.98306	1.0346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98306	1.0346	NaN	1	1	Median	18252000	9075300	9176700	0	0	0	0	0	0	0	0	0	18252000	9075300	9176700	3649	302	3441	22422	30475	30475			1	
ALTEQDKLK	2	Acetyl (K)	1086.5921	0.59208927	5787				yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						3					1	2		46.601	37.297	2	0.0032024	20899	160513_QHF_FH_JSI11Kac_3	80.438	14.365	+		0.95799	1.1504	4.3559	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95799	1.1504	NaN	1	0	Median	1.0768	1.0668	0	2	0	Median	NaN	NaN	NaN	0	0	Median	89997000	44751000	45246000	0	0	0	37741000	19312000	18428000	52256000	25439000	26818000	0	0	0	3650	5787	3442	22423;22424;22425	30476	30476	3559		1	
ALTGGIAHLFK	1	Unmodified	1126.6499	0.64987892	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	6.05		3	9						5	5	4	5	3	62.965	59.679	2;3	4.2438E-18	50002	160511_QHF_FH_JSI10i_3	182.76	122			0.96979	1.0287	57.329	17	5	Median	1.3215	1.1321	103.17	5	3	Median	0.9048	1.044	9.9153	4	0	Median	0.76828	0.73117	33.773	5	2	Linear	0.90272	0.96295	3.5189	3	0	Median	10049000000	4695200000	5354100000	2999900000	1246300000	1753600000	1929000000	1080600000	848380000	2597300000	1126800000	1470500000	2523000000	1241500000	1281500000	3651	935	3443	22426;22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440;22441;22442	30477;30478;30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491;30492;30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508	30485			31	
ALTGGIAHLFKQNK	2	Acetyl (K)	1538.8569	0.85691158	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	72.444	63.681	2;3	2.8546E-96	33298	160513_QHF_FH_JSI12Kac_6	248.42	194.67			0.85074	0.90763	11.656	8	0	Median	1.1582	1.0039	4.1699	2	0	Median	0.75625	0.89137	0.36806	2	0	Median	0.81168	0.76636	1.9486	2	0	Median	0.92325	0.97178	7.4704	2	0	Median	2025900000	1100100000	925820000	322270000	161320000	160950000	644530000	356650000	287880000	472300000	280640000	191660000	586800000	301470000	285340000	3652	935	3444	22443;22444;22445;22446;22447;22448;22449;22450	30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524	30520	688		16	
ALTGHLEEVVLALLK	1	Unmodified	1604.9501	0.95014327	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	4.57		5	14						3	8	7	4	3	102.34	101.7	2;3	4.6899E-45	84618	160511_QHF_FH_JSI10i_3	248.41	215.18			0.9708	0.91271	9.9955	18	18	Median	1.0835	0.89351	10.911	7	7	Median	0.75295	0.87132	10.106	6	6	Median	0.98455	0.93233	4.6554	3	3	Median	0.97496	1.0286	4.5827	2	2	Median	11592000000	6076800000	5515500000	650760000	316480000	334290000	1693700000	954910000	738760000	3678500000	1891300000	1787100000	5569300000	2914000000	2655300000	3653	805	3445	22451;22452;22453;22454;22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472	30525;30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537;30538;30539;30540;30541;30542;30543;30544;30545;30546;30547;30548;30549;30550;30551	30529			27	
ALTHFLK	1	Unmodified	828.48577	0.48577371	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	29.777	29.076	2	0.0089406	24083	160511_QHF_FH_JSI12i_3	81.297	31.938			0.8743	0.83766	27.199	4	0	Median	0.98636	0.79084	NaN	1	0	Median	0.77496	0.88725	NaN	1	0	Median	1.2367	1.203	NaN	1	0	Median	0.62217	0.6253	NaN	1	0	Median	324870000	179930000	144940000	95713000	49600000	46113000	59775000	34634000	25141000	62672000	32741000	29931000	106710000	62958000	43751000	3654	3117	3446	22473;22474;22475;22476	30552;30553;30554;30555;30556	30556			5	
ALTHIDHSLSR	0	Unmodified	1248.6575	0.65748349	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							6	1	3	1	20.423	19.469	2;3;4	1.9228E-06	15653	160511_QHF_FH_JSI9i_3	119.55	93.434			1.1373	0.98368	39.197	9	3	Median	1.2201	0.99393	39.518	6	3	Median	0.82788	0.98368	NaN	1	0	Median	0.58538	0.55208	NaN	1	0	Median	0.98964	1.0256	NaN	1	0	Median	697940000	317190000	380750000	495380000	195680000	299700000	93373000	60966000	32408000	84876000	49206000	35670000	24313000	11343000	12970000	3655	1872	3447	22477;22478;22479;22480;22481;22482;22483;22484;22485;22486;22487	30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567	30563			10	
ALTHLEMR	0	Unmodified	969.50659	0.5065855	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.7	6.1		2	5						3	2	3	2	3	27.067	23.578	2;3	0.00047584	19342	160511_QHF_FH_JSI12i_3	76.827	68.606			0.93192	0.9299	35.645	8	2	Median	1.2649	1.0678	13.755	2	0	Median	0.61964	0.73797	69.27	2	0	Median	0.65327	0.61632	NaN	1	1	Median	0.86396	0.8925	26.623	3	1	Median	748610000	409870000	338740000	61104000	27467000	33636000	57292000	37824000	19468000	84796000	47780000	37016000	545420000	296800000	248610000	3656	606	3448	22488;22489;22490;22491;22492;22493;22494;22495;22496;22497	30568;30569;30570;30571;30572;30573;30574	30572			7	
ALTHNGTPR	0	Unmodified	965.50428	0.50427732	4838	Q9HB90	RRAGC	Ras-related GTP-binding protein C	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	5.8428	5.5349	3	0.0071979	3365	160511_QHF_FH_JSI9i_3	40.994	23.008			1.1849	0.98238	26.282	3	1	Median	1.1849	0.98238	NaN	1	0	Median	1.2485	1.4409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87078	0.87108	NaN	1	0	Median	220270000	114910000	105360000	99830000	54316000	45514000	67243000	32992000	34251000	0	0	0	53199000	27604000	25595000	3657	4838	3449	22498;22499;22500	30575;30576	30576			2	
ALTKFPERVEPR	1	Acetyl (K)	1483.8147	0.81471242	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		84.02	74.703	2	0.055253	41289	160513_QHF_FH_JSI11Kac_6	48.64	13.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3658	557	3450	22501	30577	30577			1	
ALTLDQWLEQHK	1	Unmodified	1480.7674	0.76742787	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	1	2	71.799	71.164	2;3	6.6094E-08	61816	160511_QHF_FH_JSI12i_3	129.34	123.26			1.0662	1.0336	15.885	7	3	Median	1.0944	0.94162	NaN	1	0	Median	0.79601	0.97291	19.506	3	2	Median	1.0833	1.0336	NaN	1	0	Median	1.1564	1.1773	10.905	2	1	Median	797480000	399610000	397870000	44188000	23237000	20951000	169120000	93425000	75696000	246920000	112410000	134510000	337250000	170540000	166710000	3659	4844	3451	22502;22503;22504;22505;22506;22507;22508	30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588	30587			11	
ALTLGALTLPLAR	0	Unmodified	1308.8129	0.8129215	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		4	1						2	3	1	2	1	97.666	94.983	2	1.184E-16	45383	160513_QHF_FH_JSI9Kac_6	141.95	118.53			1.1763	1.0011	13.879	7	1	Median	1.3371	1.0782	13.968	3	1	Median	0.75696	0.9438	NaN	1	0	Median	1.0461	1.0172	20.486	2	0	Median	0.84669	0.95932	NaN	1	0	Median	923220000	438270000	484950000	485110000	205820000	279290000	108530000	63408000	45124000	277420000	138910000	138500000	52167000	30133000	22034000	3660	4399	3452	22509;22510;22511;22512;22513;22514;22515	30589;30590;30591;30592;30593;30594	30594			5	
ALTLIAGSPLK	1	Unmodified	1082.6699	0.66994566	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.12		4	5				1	4	1	3	3	6	3	71.087	66.479	2	3.4284E-18	58065	160511_QHF_FH_JSI12i_3	163.16	138.24			0.59134	0.58121	87.449	15	12	Median	0.41882	0.35216	105.49	3	2	Median	0.34095	0.4092	94.143	3	2	Median	0.79736	0.77578	85.68	6	6	Median	0.42231	0.46207	102.89	3	2	Median	8586400000	6711000000	1875400000	1351800000	1107700000	244150000	1750200000	1500500000	249650000	3247200000	2396300000	850940000	2237100000	1706400000	530670000	3661	3343	3453	22516;22517;22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530	30595;30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615;30616	30616			22	
ALTLPGSSENEYIMK	1	Unmodified	1651.8127	0.81272309	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.799	5	5	4							3	6	3	2	69.524	68.726	2;3	5.1412E-07	60937	160511_QHF_FH_JSI10i_2	132.32	114.43			0.93444	0.94871	13.587	12	4	Median	1.0574	0.86634	5.0195	3	0	Median	0.72703	0.88464	15.932	4	3	Median	1.0611	1.0903	5.971	3	1	Plateau	0.89237	0.96151	2.5122	2	0	Median	3895000000	2041000000	1853900000	648500000	334970000	313520000	1111400000	634620000	476750000	1231300000	621410000	609880000	903810000	450030000	453780000	3662	1844	3454	22531;22532;22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544	30617;30618;30619;30620;30621;30622;30623;30624;30625;30626;30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643	30643			27	
ALTLPGSSENEYIMK	1	Oxidation (M)	1667.8076	0.80763771	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		60.219	59.453	2	0.00013756	53720	160511_QHF_FH_JSI10i_1	77.379	63.951			1.1638	1.0568	30.713	2	2	Median	0.99934	0.85046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3553	1.3131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91843000	39166000	52678000	31455000	13793000	17662000	0	0	0	60388000	25372000	35016000	0	0	0	3663	1844	3454	22545;22546;22547	30644;30645;30646	30645		1516	3	
ALTLPGSSENEYIMKAIMR	1	Acetyl (K)	2165.0861	0.086061175	1844	P55060	CSE1L	Exportin-2	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	92.401	82.959	3	0.00010312	44798	160513_QHF_FH_JSI12Kac_6	74.793	66.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3664	1844	3455	22548	30647	30647	1850		1	
ALTLQDLDNIWAAQAGK	1	Unmodified	1826.9527	0.95266246	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		101.15	101.07	3	3.4071E-05	89562	160511_QHF_FH_JSI10i_2	76.158	58.669			1.3457	1.3631	19.346	4	1	Median	1.4001	1.1851	NaN	1	0	Median	1.1389	1.3556	20.58	2	0	Median	1.7053	1.7112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	240730000	96032000	144700000	65045000	26926000	38119000	101400000	47161000	54238000	74287000	21944000	52343000	0	0	0	3665	3921	3456	22549;22550;22551;22552	30648;30649	30649			2	
ALTNLPHTDFTLCK	1	Unmodified	1629.8185	0.81847717	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	3	3	63.558	62.895	2;3	2.8433E-07	55858	160511_QHF_FH_JSI11i_3	125.97	102.59			0.8217	0.89288	24.485	10	4	Median	1.3313	1.1176	24.471	2	2	Median	0.96886	1.158	13.863	2	0	Median	0.7939	0.77283	11.571	3	1	Plateau	0.78644	1.1734	20.827	3	1	Plateau	1872600000	906170000	966470000	116880000	48811000	68067000	169960000	85422000	84539000	693080000	388000000	305080000	892720000	383940000	508780000	3666	5247	3457	22553;22554;22555;22556;22557;22558;22559;22560;22561;22562	30650;30651;30652;30653;30654;30655;30656;30657;30658;30659;30660;30661;30662	30652			13	
ALTNMSR	0	Unmodified	791.39597	0.39597242	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	11.627	11.426	2	0.005522	9030	160511_QHF_FH_JSI11i_3	94.539	40.483			1.0386	0.91586	17.46	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0386	1.2108	NaN	1	0	Median	1.1276	1.0723	NaN	1	0	Median	0.87691	0.85812	NaN	1	0	Median	299560000	153560000	146000000	0	0	0	64153000	32410000	31743000	107990000	49915000	58076000	127420000	71233000	56182000	3667	4538	3458	22563;22564;22565	30663;30664;30665	30664			3	
ALTQMEEAQR	0	Unmodified	1175.5605	0.56047157	659	O95229	ZWINT	ZW10 interactor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.423	21.154	2	0.012507	18304	160511_QHF_FH_JSI10i_1	54.982	34.461			0.37736	0.44589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37736	0.44589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15611000	9844300	5766200	0	0	0	15611000	9844300	5766200	0	0	0	0	0	0	3668	659	3459	22566	30666	30666			1	
ALTQPLGLLR	0	Unmodified	1080.6655	0.66552898	4239	Q96S97	MYADM	Myeloid-associated differentiation marker	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			70.085	68.621	2	0.00080654	57374	160511_QHF_FH_JSI10i_3	83.265	26.535			0.65785	0.76378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65785	0.76378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24551000	14041000	10510000	0	0	0	24551000	14041000	10510000	0	0	0	0	0	0	3669	4239	3460	22567	30667	30667			1	
ALTQPSPVSTPSSVQFFLQEDDSADRK	1	Unmodified	2949.4356	0.43559521	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.734	83.734	3	3.3551E-06	74741	160511_QHF_FH_JSI11i_3	56.298	49.649			0.69471	0.65808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69471	0.65808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17479000	13344000	4135000	0	0	0	0	0	0	17479000	13344000	4135000	0	0	0	3670	820	3461	22568	30668	30668			1	
ALTQRPDYIK	1	Unmodified	1203.6612	0.66117189	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		25.171	25.171	2	0.0034271	21495	160511_QHF_FH_JSI11i_3	72.643	24.36			0.7753	0.74169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7753	0.74169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42407000	21203000	21204000	0	0	0	0	0	0	42407000	21203000	21204000	0	0	0	3671	5351	3462	22569	30669;30670	30669			2	
ALTQTGGPHVK	1	Unmodified	1107.6037	0.60365701	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		8	8					2	8	8	6	6	6	15.227	11.854	2;3	7.625E-24	9614	160511_QHF_FH_JSI12i_3	197.27	141.74			0.9674	0.96231	12.015	26	1	Median	1.1121	0.95341	13.973	8	1	Median	0.8506	1.0167	12.405	6	0	Median	0.94997	0.90649	8.2982	6	0	Median	0.90794	0.96231	10.956	6	0	Median	12867000000	6343500000	6523900000	1229300000	650940000	578380000	2917000000	1487400000	1429700000	3896500000	1939100000	1957400000	4824500000	2266100000	2558400000	3672	1192	3463	22570;22571;22572;22573;22574;22575;22576;22577;22578;22579;22580;22581;22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592;22593;22594;22595	30671;30672;30673;30674;30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689;30690;30691;30692;30693;30694;30695;30696;30697;30698;30699;30700;30701;30702;30703;30704;30705;30706;30707;30708;30709;30710;30711;30712;30713;30714;30715;30716;30717;30718	30709			48	
ALTSADGASEEQSQNDEDNQGSEK	1	Unmodified	2509.0324	0.032441518	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	3.16	10				1					2	4	3	2	18.403	17.951	2;3	1.1108E-215	15096	160511_QHF_FH_JSI9i_1	334.78	322.15			1.0152	0.99371	40.962	9	2	Median	1.2118	0.9997	6.8011	2	0	Median	0.96256	1.104	20.583	2	0	Median	0.87594	0.86508	79.745	3	2	Median	0.9811	1.0211	3.8402	2	0	Median	536530000	258270000	278270000	135120000	58896000	76222000	125150000	55675000	69471000	136840000	70533000	66309000	139430000	73164000	66264000	3673	3844	3464	22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606	30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729;30730;30731;30732;30733;30734;30735;30736;30737;30738;30739	30738			21	
ALTSEIALLQSR	0	Unmodified	1300.7351	0.73506511	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	2	3	3	69.334	68.669	2	1.3593E-41	61187	160511_QHF_FH_JSI11i_3	201.75	141.31			1.1758	1.1759	34.434	10	0	Linear	0.88885	0.73116	30.975	2	0	Median	0.66609	0.80642	35.494	2	0	Median	1.048	1.056	14.877	3	0	Plateau	1.1483	1.2228	58.702	3	0	Plateau	2956700000	1427700000	1529000000	403220000	179770000	223450000	428000000	240670000	187330000	1080700000	511210000	569510000	1044800000	496060000	548730000	3674	816	3465	22607;22608;22609;22610;22611;22612;22613;22614;22615;22616	30740;30741;30742;30743;30744;30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756	30740			16	
ALTSELANAR	0	Unmodified	1044.5564	0.55637247	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.42	4	2	1				1	1		3	1	3	2	32.644	29.936	2	2.6315E-05	26700	160511_QHF_FH_JSI10i_1	97.431	86.739			0.52641	0.83712	39.426	9	5	Linear	0.79776	0.6597	22.773	3	2	Plateau	0.77303	0.91184	NaN	1	0	Median	0.64456	0.63101	64.543	3	1	Median	0.83364	0.89705	15.469	2	2	Median	1834800000	1121800000	713000000	485070000	283590000	201480000	215550000	137540000	78015000	453680000	293160000	160520000	680470000	407490000	272980000	3675	1270	3466	22617;22618;22619;22620;22621;22622;22623;22624;22625	30757;30758;30759;30760;30761;30762;30763;30764;30765;30766;30767	30764			11	
ALTSELANARDESK	1	Unmodified	1503.7529	0.75290002	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.53		7	7				1	3	1	5	5	5	4	31.132	28.067	2;3	5.7201E-51	24229	160511_QHF_FH_JSI11i_3	217.09	182.7			0.99846	1.0273	17.634	19	0	Median	1.3123	1.0771	12.374	5	0	Median	1.0142	1.2061	7.7165	5	0	Median	0.89699	0.89792	14.075	5	0	Median	0.73821	0.72747	14.926	4	0	Linear	7100100000	3552100000	3548000000	1282700000	587590000	695120000	1978500000	1085800000	892650000	2788300000	1354900000	1433300000	1050600000	523720000	526860000	3676	1270	3467	22626;22627;22628;22629;22630;22631;22632;22633;22634;22635;22636;22637;22638;22639;22640;22641;22642;22643;22644	30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778;30779;30780;30781;30782;30783;30784;30785;30786;30787;30788;30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799	30774			32	
ALTSFER	0	Unmodified	822.42357	0.42356738	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	25.026	25.013	2	0.019993	20805	160511_QHF_FH_JSI12i_3	57.463	30.343			1.152	1.1392	31.986	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95544	0.90862	NaN	1	0	Median	1.3889	1.4284	NaN	1	0	Median	671550000	298530000	373030000	0	0	0	0	0	0	290460000	128270000	162190000	381090000	170260000	210840000	3677	1507	3468	22645;22646	30800;30801;30802	30802			3	
ALTSQLTDEELAQGR	0	Unmodified	1630.8162	0.81622856	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	3	1	51.056	50.413	2;3	4.5342E-137	44787	160511_QHF_FH_JSI9i_1	332.42	285.95			1.2645	1.1656	23.544	8	5	Median	1.6286	1.3592	25.774	2	0	Median	1.0759	1.2743	40.797	2	1	Median	1.0616	1.0195	26.256	3	3	Plateau	1.1494	1.1994	NaN	1	1	Median	877740000	439400000	438340000	158700000	72326000	86371000	150280000	79152000	71127000	373090000	197440000	175640000	195670000	90474000	105200000	3678	1225	3469	22647;22648;22649;22650;22651;22652;22653;22654;22655	30803;30804;30805;30806;30807;30808;30809;30810;30811;30812;30813	30809			11	
ALTSVVNYREPK	1	Unmodified	1375.746	0.74596415	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			37.198	35.733	2;3	0.00012078	29012	160511_QHF_FH_JSI9i_3	75.102	66.357			0.8228	0.80078	6.4315	2	0	Median	1.0251	0.83804	NaN	1	0	Median	0.6604	0.76518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	190450000	102010000	88442000	114830000	57901000	56930000	75623000	44110000	31513000	0	0	0	0	0	0	3679	2454	3470	22656;22657;22658	30814;30815;30816;30817;30818	30816			5	
ALTTMGFR	0	Unmodified	895.45857	0.45857268	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		42.819	41.78	2	0.00019177	36769	160511_QHF_FH_JSI11i_3	121.29	76.681			1.0674	0.84144	19.162	3	0	Plateau	1.0674	0.84144	NaN	1	0	Median	1.0977	1.2339	NaN	1	0	Median	1.0807	1.0349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1339500000	650220000	689270000	482130000	234380000	247750000	422770000	206790000	215980000	434580000	209050000	225530000	0	0	0	3680	1361	3471	22659;22660;22661	30819;30820;30821;30822;30823	30819			5	
ALTTPTHYK	1	Unmodified	1030.5447	0.54474515	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	4	3	2	16.545	16.134	2;3	1.6382E-06	12684	160511_QHF_FH_JSI12i_3	131.03	104.43			0.88871	0.94968	31.136	9	1	Median	1.3144	1.1448	NaN	1	0	Median	0.7173	0.84099	38.466	3	0	Median	1.0026	0.94968	33.824	3	1	Plateau	0.98102	1.0015	3.3953	2	0	Median	1291200000	680460000	610770000	24309000	10613000	13696000	236340000	133100000	103230000	452710000	236690000	216020000	577870000	300050000	277810000	3681	1790	3472	22662;22663;22664;22665;22666;22667;22668;22669;22670;22671;22672	30824;30825;30826;30827;30828;30829;30830;30831;30832;30833;30834;30835;30836;30837;30838	30836			14	
ALTVAHELLCNKPEEEK	2	Unmodified	1979.9986	0.99862638	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		45.919	45.919	3	0.0038335	40545	160511_QHF_FH_JSI11i_3	45.618	36.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3682	2213	3473	22673	30839	30839			1	
ALTVLMK	1	Unmodified	774.46735	0.46734645	5757				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.67	4	6	5				2	6	7	7	9	8	6	56.373	50.992	2	0.0020203	44592	160511_QHF_FH_JSI11i_3	114.02	56.559	+		0.97848	1.0025	26.816	30	1	Median	1.013	0.8516	50.332	7	1	Median	0.8826	1.0632	12.666	9	0	Median	1.0505	1.0287	4.5578	8	0	Median	0.98547	1.0025	18.943	6	0	Plateau	17444000000	8112200000	9331700000	3027100000	1426700000	1600500000	2804700000	1358700000	1446000000	3799400000	1690500000	2108900000	7812700000	3636300000	4176400000	3683	5757	3474	22674;22675;22676;22677;22678;22679;22680;22681;22682;22683;22684;22685;22686;22687;22688;22689;22690;22691;22692;22693;22694;22695;22696;22697;22698;22699;22700;22701;22702;22703	30840;30841;30842;30843;30844;30845;30846;30847;30848;30849;30850;30851;30852;30853;30854;30855;30856;30857;30858;30859;30860;30861;30862;30863;30864;30865;30866;30867;30868;30869;30870;30871;30872;30873;30874;30875;30876;30877;30878;30879;30880	30842			41	
ALTVLMK	1	Oxidation (M)	790.46226	0.46226107	5757				yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	3.47			1				1	5	5	3	3	3	3	48.746	39.604	2	0.0079731	21406	160513_QHF_FH_JSI9Kac_5	83.614	42.112	+		0.82003	0.87402	44.042	12	0	Median	1.1789	1.0071	53.198	3	0	Plateau	1.0685	1.2649	23.469	3	0	Median	0.78741	0.74644	8.5559	3	0	Plateau	0.854	0.89483	54.199	3	0	Median	932750000	446850000	485910000	121190000	65334000	55858000	70242000	35971000	34270000	166120000	66851000	99270000	575200000	278690000	296510000	3684	5757	3474	22704;22705;22706;22707;22708;22709;22710;22711;22712;22713;22714;22715	30881;30882;30883;30884;30885;30886;30887;30888	30881		2742	8	
ALTVPELTQQMFDAK	1	Unmodified	1690.86	0.86000763	2075;811;2430	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	2.51	13	7	9					1		6	5	12	7	92.32	91.474	2;3	1.2398E-51	81799	160511_QHF_FH_JSI9i_1	213.16	196.13			1.0437	1.0137	44.915	25	9	Median	1.2264	1.0027	26.466	5	2	Median	0.86986	1.0538	71.568	5	1	Median	0.99673	0.97655	40.732	9	4	Median	1.0209	1.0657	43.533	6	2	Median	12528000000	6103600000	6424200000	1161800000	507900000	653920000	3818700000	1820300000	1998400000	4671100000	2349900000	2321200000	2876200000	1425500000	1450700000	3685	2075;811;2430	3475	22716;22717;22718;22719;22720;22721;22722;22723;22724;22725;22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736;22737;22738;22739;22740;22741;22742;22743;22744;22745	30889;30890;30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906;30907;30908;30909;30910;30911;30912;30913;30914;30915;30916;30917;30918;30919;30920;30921;30922;30923;30924;30925;30926;30927;30928;30929;30930;30931;30932;30933;30934;30935;30936;30937;30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948;30949;30950;30951;30952;30953;30954;30955;30956;30957;30958;30959;30960;30961;30962;30963;30964;30965;30966;30967;30968;30969;30970;30971;30972;30973;30974;30975;30976;30977;30978;30979;30980;30981;30982;30983;30984;30985;30986;30987	30951			99	
ALTVPELTQQMFDAK	1	Oxidation (M)	1706.8549	0.85492225	2075;811;2430	P68371;P04350;Q13509	TUBB4B;TUBB4A;TUBB3	Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3									4	4	2	72.769	72.372	2;3	0.00020148	65614	160511_QHF_FH_JSI10i_1	68.262	16.715			0.84412	0.91359	27.013	7	4	Median	NaN	NaN	NaN	0	0	Median	0.77365	0.91359	30.934	3	2	Median	0.84412	0.82361	30.321	3	2	Median	1.0331	1.1081	NaN	1	0	Median	270120000	156930000	113190000	0	0	0	103240000	62011000	41233000	122890000	75157000	47735000	43979000	19762000	24217000	3686	2075;811;2430	3475	22746;22747;22748;22749;22750;22751;22752;22753;22754;22755	30988;30989;30990;30991;30992;30993;30994;30995;30996;30997	30993		322	10	
ALTVPELTQQMFDAR	0	Unmodified	1718.8662	0.86615564	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	4	10	2							4	4	4	4	92.805	92.495	2;3	3.6446E-21	81970	160511_QHF_FH_JSI10i_2	170.04	153.79			0.88188	0.95479	17.259	12	7	Median	1.0938	0.9481	7.1166	2	2	Median	0.81923	0.98267	9.7792	4	2	Median	0.97354	0.94881	14.674	2	1	Median	0.87422	0.94384	28.855	4	2	Median	1193200000	662480000	530740000	265200000	144400000	120800000	347250000	186580000	160660000	270610000	142940000	127670000	310160000	188560000	121600000	3687	4440	3476	22756;22757;22758;22759;22760;22761;22762;22763;22764;22765;22766;22767;22768;22769;22770;22771	30998;30999;31000;31001;31002;31003;31004;31005;31006;31007;31008;31009;31010;31011;31012;31013;31014;31015	31012			17	
ALTVPELTQQMFDSK	1	Unmodified	1706.8549	0.85492225	2477	Q13885;Q9BVA1	TUBB2A;TUBB2B	Tubulin beta-2A chain;Tubulin beta-2B chain	yes	no	0	0	0	0				By MS/MS	2	0		3											3	91.141	90.27	2	0.0056964	62692	160511_QHF_FH_JSI12i_2	52.79	0.86301			0.85959	0.94365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85959	0.94365	NaN	1	1	Median	12261000	8888500	3372100	0	0	0	0	0	0	0	0	0	12261000	8888500	3372100	3688	2477	3477	22772;22773;22774	31016;31017;31018	31018			3	
ALTVPELTQQVFDAK	1	Unmodified	1658.8879	0.88793694	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.03	4.96	11	7	8					4	1	9	11	7	4	90.607	88.644	2;3	7.5483E-66	79639	160511_QHF_FH_JSI11i_2	236.57	201.85			1.0248	2.2918	23.049	27	5	Linear	1.2227	0.99559	2.9496	8	3	Median	0.88098	1.1032	10.268	8	1	Linear	1.015	0.99334	10.496	7	0	Median	0.8836	0.95797	51.085	4	1	Linear	27932000000	13639000000	14293000000	7244500000	3421600000	3822800000	7724900000	4035700000	3689200000	6648100000	3217000000	3431100000	6314900000	2964700000	3350300000	3689	872	3478	22775;22776;22777;22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805	31019;31020;31021;31022;31023;31024;31025;31026;31027;31028;31029;31030;31031;31032;31033;31034;31035;31036;31037;31038;31039;31040;31041;31042;31043;31044;31045;31046;31047;31048;31049;31050;31051;31052;31053;31054;31055;31056;31057;31058;31059;31060;31061;31062;31063;31064;31065;31066;31067;31068;31069;31070;31071;31072;31073;31074;31075;31076;31077;31078;31079;31080;31081;31082;31083;31084;31085;31086;31087;31088;31089;31090;31091;31092;31093;31094;31095;31096;31097;31098;31099;31100;31101;31102;31103;31104;31105;31106;31107;31108;31109;31110;31111;31112;31113;31114;31115;31116;31117;31118;31119;31120;31121;31122;31123;31124;31125;31126;31127;31128	31110			109	
ALVADSHPESER	0	Unmodified	1309.6262	0.62624295	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	2	4	4	13.463	13.19	2;3	1.3161E-05	10846	160511_QHF_FH_JSI10i_2	94.692	74.172			0.90661	0.85705	15.16	10	3	Median	0.84313	0.7287	12.463	2	1	Median	0.58892	0.71362	NaN	1	0	Median	0.96383	0.95536	5.285	3	0	Plateau	0.87651	0.85705	12.5	4	2	Median	607580000	309110000	298470000	70395000	35385000	35010000	73265000	51944000	21320000	246090000	114580000	131510000	217830000	107210000	110620000	3690	2162	3479	22806;22807;22808;22809;22810;22811;22812;22813;22814;22815;22816;22817	31129;31130;31131;31132;31133;31134;31135;31136;31137;31138;31139;31140;31141;31142	31138			14	
ALVAESHNMK	1	Unmodified	1098.5492	0.5491786	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	5.79		1	2						1			3	1	12.825	12.781	2;3	1.344E-05	9782	160511_QHF_FH_JSI12i_3	91.658	76.068			1.4032	1.4043	42.297	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9001	1.8374	55.645	2	1	Median	1.4032	1.4043	NaN	1	0	Median	366400000	147650000	218750000	0	0	0	0	0	0	139060000	50792000	88264000	227350000	96857000	130490000	3691	3839	3480	22818;22819;22820;22821	31143;31144;31145	31145			3	
ALVAIGTHDLDTLSGPFTYTAK	1	Unmodified	2290.1845	0.18451289	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	3	1	1	91.469	90.981	3	2.0716E-37	78778	160511_QHF_FH_JSI12i_3	194.18	155.36			0.89978	0.98525	7.707	6	1	Median	1.2191	1.0581	NaN	1	0	Median	0.78112	0.96291	7.0293	3	1	Median	0.92475	0.88714	NaN	1	0	Median	1.0043	1.0226	NaN	1	0	Median	532120000	295840000	236270000	41776000	19605000	22171000	84814000	50269000	34545000	168170000	93171000	74999000	237360000	132800000	104560000	3692	4982	3481	22822;22823;22824;22825;22826;22827	31146;31147;31148;31149;31150;31151;31152;31153;31154;31155;31156;31157;31158	31158			13	
ALVAMNENLK	1	Unmodified	1101.5852	0.58522975	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	44.238	43.745	2	0.0017716	38264	160511_QHF_FH_JSI9i_2	67.897	42.974			1.0862	1.081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0862	1.081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30388000	16448000	13940000	0	0	0	0	0	0	30388000	16448000	13940000	0	0	0	3693	2866	3482	22828;22829;22830	31159;31160;31161	31160			3	
ALVATPGK	1	Unmodified	755.45414	0.45413923	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	5.95	4	4	3			2	3	2		4	3	6	5	22.909	19.252	2	0.00021208	16428	160511_QHF_FH_JSI9i_1	119.57	63.056			0.90191	0.97412	34.615	18	1	Median	1.2325	1.0132	36.816	4	1	Median	0.84866	1.012	6.4366	3	0	Median	0.87343	0.87362	51.308	6	0	Median	0.94022	0.99725	27.231	5	0	Median	7376600000	3746200000	3630400000	1568100000	715420000	852660000	1523200000	840580000	682610000	2533800000	1260800000	1273000000	1751500000	929400000	822120000	3694	1154	3483	22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845;22846;22847;22848	31162;31163;31164;31165;31166;31167;31168;31169;31170;31171;31172;31173;31174;31175;31176;31177;31178;31179;31180;31181;31182;31183;31184;31185;31186;31187;31188;31189;31190;31191;31192	31181			31	
ALVATPGKK	2	Unmodified	883.5491	0.54910224	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.47	1	6	10					3	8	7	9	8	4	15.284	11.74	2;3	3.8359E-11	9771	160511_QHF_FH_JSI9i_3	155.75	130.76			0.94561	0.89839	41.486	27	5	Median	1.0459	0.89479	11.911	7	0	Median	0.7594	0.90436	36.236	9	2	Median	0.94561	0.89839	74.288	7	3	Median	0.87719	0.91248	6.7659	4	0	Median	32685000000	12923000000	19762000000	5595500000	1937500000	3658100000	7047900000	3642400000	3405500000	10507000000	4241300000	6265900000	9533900000	3101500000	6432400000	3695	1154	3484	22849;22850;22851;22852;22853;22854;22855;22856;22857;22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868;22869;22870;22871;22872;22873;22874;22875;22876	31193;31194;31195;31196;31197;31198;31199;31200;31201;31202;31203;31204;31205;31206;31207;31208;31209;31210;31211;31212;31213;31214;31215;31216;31217;31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234;31235;31236;31237;31238;31239;31240;31241;31242;31243	31216			49	
ALVAVLLSR	0	Unmodified	940.60695	0.60695147	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	76.644	68.211	2	9.4559E-06	37713	160513_QHF_FH_JSI10Kac_6	131.03	82.528			0.90961	0.94557	20.609	4	0	Median	1.2644	1.0749	NaN	1	0	Median	0.70523	0.83179	NaN	1	0	Median	1.1732	1.1345	NaN	1	0	Median	0.6895	0.73641	NaN	1	0	Median	549540000	303710000	245830000	94293000	34715000	59578000	358070000	221870000	136190000	67295000	28593000	38701000	29887000	18527000	11361000	3696	3860	3485	22877;22878;22879;22880;22881	31244;31245;31246;31247;31248;31249;31250;31251	31251			8	
ALVAYYQK	1	Unmodified	954.51747	0.51746776	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.93	6.23	3	5	4	1		3	3	4	4	4	8	7	8	39.428	33.767	2	4.7465E-16	20258	160513_QHF_FH_JSI11Kac_4	163.41	59.699			1.0046	1.0555	32.621	27	3	Median	1.2944	1.127	17.029	4	0	Median	0.95008	1.0915	26.655	8	2	Median	1.0291	1.0276	23.923	7	0	Median	0.95162	1.0163	49.302	8	1	Median	25788000000	13157000000	12631000000	3992700000	1967800000	2024900000	5986700000	3053400000	2933400000	9282100000	4606300000	4675800000	6526200000	3529700000	2996400000	3697	1987	3486	22882;22883;22884;22885;22886;22887;22888;22889;22890;22891;22892;22893;22894;22895;22896;22897;22898;22899;22900;22901;22902;22903;22904;22905;22906;22907;22908	31252;31253;31254;31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267;31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278;31279;31280;31281;31282;31283;31284;31285;31286;31287;31288;31289;31290;31291;31292;31293;31294;31295;31296;31297;31298;31299;31300;31301;31302;31303;31304;31305;31306;31307;31308;31309	31275			58	
ALVAYYQKYVDEASK	2	Acetyl (K)	1788.8934	0.89341625	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.177	70.863	2	6.1784E-16	38850	160513_QHF_FH_JSI11Kac_6	186.91	154.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19744000	19744000	0	0	0	0	0	0	0	19744000	19744000	0	0	0	0	3698	1987	3487	22909	31310	31310	2008		1	
ALVDELEWEIAQVDPK	1	Unmodified	1853.9411	0.94109472	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	101.45	101.35	3	0.0001874	87193	160511_QHF_FH_JSI12i_2	62.377	52.797			1.0079	1.019	16.569	5	0	Median	1.01	0.85962	NaN	1	0	Median	1.0568	1.2651	1.8785	2	0	Median	1.0036	1.0124	NaN	1	0	Median	0.92983	1.019	NaN	1	0	Median	602680000	323480000	279200000	82682000	44951000	37731000	118200000	65448000	52752000	218210000	117160000	101050000	183580000	95913000	87667000	3699	5508	3488	22910;22911;22912;22913;22914	31311;31312;31313	31311			3	
ALVDELEWEIAQVDPKK	2	Unmodified	1982.0361	0.03605774	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	99.983	99.808	2;3	1.1067E-10	86099	160511_QHF_FH_JSI12i_3	107.18	93.513			1.3498	1.4444	2.2772	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.432	1.4679	NaN	1	1	Median	1.2724	1.4213	NaN	1	1	Median	169130000	78070000	91059000	0	0	0	0	0	0	96510000	47926000	48584000	72619000	30144000	42475000	3700	5508	3489	22915;22916;22917	31314;31315;31316	31316			3	
ALVDGPCTQVR	0	Unmodified	1214.6078	0.60775611	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.71	4	4	5				3			4	4	4	4	34.63	31.863	2	7.9496E-15	27154	160511_QHF_FH_JSI11i_2	174.02	116.74			0.98205	1.0826	22.695	13	0	Median	1.2447	1.0495	1.9481	2	0	Median	0.94558	1.2013	6.2879	3	0	Plateau	0.90284	0.88045	8.9464	4	0	Median	1.3474	1.4287	10.326	4	0	Median	3744400000	1870300000	1874000000	458620000	214810000	243820000	929640000	502130000	427510000	1292300000	668910000	623350000	1063800000	484480000	579360000	3701	1720	3490	22918;22919;22920;22921;22922;22923;22924;22925;22926;22927;22928;22929;22930;22931;22932;22933	31317;31318;31319;31320;31321;31322;31323;31324;31325;31326;31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343	31336			27	
ALVDHENVISCPHLGASTK	1	Unmodified	2047.0157	0.015673424	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.9		7	10						6	6	4	7	6	47.521	45.001	2;3;4	1.2901E-42	38523	160511_QHF_FH_JSI12i_3	198.07	181.05			1.0625	1.0813	21.363	20	2	Median	1.2635	1.0813	6.5767	4	1	Median	0.91988	1.09	11.958	4	0	Median	0.85469	0.8171	25.443	7	1	Median	1.2137	1.2298	9.6678	5	0	Median	9552700000	4732400000	4820300000	370050000	184040000	186010000	1764700000	949120000	815620000	3854300000	2204900000	1649400000	3563600000	1394400000	2169300000	3702	309	3491	22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948;22949;22950;22951;22952;22953;22954;22955;22956	31344;31345;31346;31347;31348;31349;31350;31351;31352;31353;31354;31355;31356;31357;31358;31359;31360;31361;31362;31363;31364;31365;31366;31367;31368;31369;31370;31371;31372;31373;31374;31375;31376;31377;31378;31379;31380;31381;31382;31383;31384	31377			39	
ALVDILSEVSK	1	Unmodified	1172.6653	0.66525421	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	6.08	3	4	2					4		3	3	4	3	85.874	82.848	2	4.8706E-13	76062	160511_QHF_FH_JSI10i_2	147.12	122.6			0.87675	0.98441	32.161	12	1	Median	1.1686	0.98773	46.174	3	1	Median	0.80724	1.0014	34.968	3	0	Median	0.91657	0.90938	13.944	4	0	Median	0.79927	0.84074	25.394	2	0	Median	701380000	356930000	344450000	104420000	46481000	57939000	131560000	77843000	53714000	351420000	174220000	177200000	113980000	58381000	55597000	3703	4361	3492	22957;22958;22959;22960;22961;22962;22963;22964;22965;22966;22967;22968;22969	31385;31386;31387;31388;31389;31390;31391;31392;31393;31394;31395;31396;31397;31398;31399;31400;31401;31402;31403;31404;31405;31406;31407	31405			23	
ALVDYTSDSAEK	1	Unmodified	1297.6038	0.60377617	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	2	2	3	35.284	32.489	2	0.00023619	29274	160511_QHF_FH_JSI12i_1	93.561	79.067			1.236	1.1868	24.233	8	8	Median	1.6575	1.3743	26.184	2	2	Median	1.2289	1.4207	6.7781	2	2	Median	1.236	1.1868	1.2683	2	2	Median	0.88053	0.89654	27.159	2	2	Median	705270000	307000000	398270000	132470000	51815000	80655000	161350000	73968000	87379000	153920000	63831000	90091000	257530000	117380000	140150000	3704	5239	3493	22970;22971;22972;22973;22974;22975;22976;22977;22978	31408;31409;31410;31411;31412;31413;31414;31415;31416	31410			9	
ALVEEALAQR	0	Unmodified	1098.6033	0.60332266	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	43.976	43.385	2	8.1287E-07	38114	160511_QHF_FH_JSI10i_2	112.84	83.693			1.1431	1.1204	6.5496	6	3	Median	NaN	NaN	NaN	0	0	Median	0.87589	1.0635	NaN	1	0	Median	1.1769	1.1287	7.3066	3	2	Plateau	1.0971	1.1544	6.2909	2	1	Median	1250400000	624020000	626330000	0	0	0	196350000	99210000	97144000	723720000	362020000	361700000	330280000	162790000	167490000	3705	4834	3494	22979;22980;22981;22982;22983;22984	31417;31418;31419;31420;31421;31422	31421			5	
ALVEFESNPEETREPGSPPSVQR	0	Unmodified	2554.23	0.22995953	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		54.764	54.114	3	1.0197E-16	47455	160511_QHF_FH_JSI9i_2	130.87	122.78			1.1985	1.1491	8.1456	3	0	Median	1.1985	1.0154	NaN	1	0	Median	0.92986	1.1491	NaN	1	0	Median	1.2719	1.184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	212280000	105890000	106390000	67035000	32125000	34909000	77836000	43613000	34222000	67408000	30151000	37257000	0	0	0	3706	4744	3495	22985;22986;22987	31423;31424;31425;31426;31427;31428;31429	31427			7	
ALVELLR	0	Unmodified	812.51199	0.51198846	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	58.534	57.705	2	0.0020203	49491	160511_QHF_FH_JSI12i_3	114.02	7.262			0.90639	0.87429	13.63	4	0	Median	1.3049	1.0759	NaN	1	0	Median	0.68655	0.78728	NaN	1	0	Median	0.88912	0.83464	NaN	1	0	Median	0.924	0.91583	NaN	1	0	Median	269850000	139950000	129900000	23407000	12656000	10751000	46468000	21389000	25078000	74146000	39853000	34293000	125830000	66051000	59777000	3707	3915	3496	22988;22989;22990;22991	31430;31431;31432;31433;31434;31435	31435			6	
ALVEQSQK	1	Unmodified	901.4869	0.48689592	2954	Q5T7V8	GORAB	RAB6-interacting golgin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	9.4579	9.2149	2	0.0019525	6993	160511_QHF_FH_JSI10i_1	83.753	49.749			0.98439	1.1437	68.53	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.84858	1.0271	NaN	1	0	Median	4.1235	3.9434	NaN	1	1	Median	1.4998	1.6038	NaN	1	0	Median	174640000	86419000	88223000	0	0	0	66735000	43367000	23368000	47409000	10433000	36976000	60498000	32619000	27879000	3708	2954	3497	22992;22993;22994	31436;31437;31438	31438			3	
ALVEVLGPYEPLLSR	0	Unmodified	1654.9294	0.92940782	3344	Q86VR2	FAM134C	Protein FAM134C	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	98.801	98.811	2	2.2423E-06	85640	160511_QHF_FH_JSI12i_3	128.28	114.12			0.94411	0.93041	6.2906	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93828	0.88993	NaN	1	0	Median	0.94997	0.97273	NaN	1	0	Median	66717000	36397000	30320000	0	0	0	0	0	0	25369000	16575000	8793500	41348000	19821000	21527000	3709	3344	3498	22995;22996	31439	31439			1	
ALVFQPVAELK	1	Unmodified	1213.7071	0.70705945	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.776	74.9	2	0.0047355	65614	160511_QHF_FH_JSI11i_2	64.04	35.642			0.55779	0.57585	15.599	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.55779	0.68411	NaN	1	1	Median	0.52863	0.51065	NaN	1	1	Median	0.58567	0.64938	NaN	1	0	Median	310310000	185090000	125220000	0	0	0	83038000	54830000	28209000	149230000	85200000	64028000	78040000	45060000	32980000	3710	897	3499	22997;22998;22999	31440;31441;31442	31441			3	
ALVGDFMNR	0	Unmodified	1021.5015	0.50150012	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	53.609	52.712	2	0.034324	45142	160511_QHF_FH_JSI12i_3	60.478	41.747			0.99143	1.0554	3.8644	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90316	1.0269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0883	1.0846	NaN	1	0	Median	156910000	76871000	80038000	0	0	0	31832000	16525000	15307000	0	0	0	125080000	60346000	64731000	3711	2305	3500	23000;23001	31443;31444	31444			1	
ALVGGAVGGLAGAASK	1	Unmodified	1297.7354	0.73539946	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.223	53.105	2	2.3841E-05	45527	160511_QHF_FH_JSI12i_3	110.38	80.636			1.1222	1.0834	4.2837	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1424	1.0511	NaN	1	0	Median	1.1023	1.1167	NaN	1	0	Median	55405000	24360000	31045000	0	0	0	0	0	0	20702000	10698000	10003000	34704000	13662000	21042000	3712	4219	3501	23002;23003	31445;31446;31447	31446			2	
ALVGLCK	1	Unmodified	759.4313	0.43129529	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.642	31.254	2	0.036703	26452	160511_QHF_FH_JSI11i_2	50.12	13.563			0.37534	0.37721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37534	0.37721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74451000	55435000	19016000	0	0	0	0	0	0	74451000	55435000	19016000	0	0	0	3713	4704	3502	23004	31448	31448			1	
ALVHERDEAAYGELR	0	Unmodified	1727.8591	0.85909643	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		5.4	5.31		1	3						1		3	2		32.583	30.398	3;4	3.3879E-07	27618	160511_QHF_FH_JSI10i_2	120.7	77.675			0.89708	1.02	35.002	5	3	Median	NaN	NaN	NaN	0	0	Median	0.88001	0.98454	4.252	3	1	Plateau	1.5067	1.4198	58.079	2	2	Median	NaN	NaN	NaN	0	0	Median	352770000	177880000	174890000	0	0	0	237640000	127010000	110630000	115130000	50869000	64262000	0	0	0	3714	5391	3503	23005;23006;23007;23008;23009	31449;31450;31451;31452;31453;31454	31453			6	
ALVIAPLFGIAQVVYFLGIAESLLGLLQDPQA	0	Unmodified	3338.8894	0.8893875	4796	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.4	5.2			1						4	2	1	2		109.19	102.47	3;4	5.8845E-49	61144	160513_QHF_FH_JSI10Kac_6	149.44	141.17			1.1489	1.1079	31.847	5	2	Median	1.6907	1.4447	15.053	2	2	Median	0.91793	1.0788	NaN	1	0	Median	0.88855	0.86653	34.745	2	0	Median	NaN	NaN	NaN	0	0	Median	274200000	122390000	151810000	41088000	11038000	30051000	199110000	91732000	107380000	34004000	19622000	14381000	0	0	0	3715	4796	3504	23010;23011;23012;23013;23014	31455;31456;31457;31458;31459;31460;31461	31461			7	
ALVILAK	1	Unmodified	726.50036	0.50036114	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.65	6.5	2	4	4				3	3	4	4	6	6	4	52.642	47.145	2	0.0037406	25489	160513_QHF_FH_JSI11Kac_6	99.511	99.511			0.88368	0.93114	17.932	20	0	Median	1.2652	1.0567	11.171	4	0	Median	0.79349	0.94826	16.656	6	0	Median	0.82253	0.79689	10.618	6	0	Median	1.0762	1.139	19.843	4	0	Linear	2815300000	1410100000	1405200000	552730000	242980000	309760000	646470000	355000000	291470000	1061300000	547750000	513540000	554790000	264330000	290460000	3716	4276	3505	23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032;23033;23034	31462;31463;31464;31465;31466;31467;31468;31469;31470;31471;31472;31473;31474;31475;31476;31477;31478;31479;31480;31481;31482;31483;31484;31485;31486;31487;31488;31489;31490;31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502	31473			41	
ALVLANPEVSLWR	0	Unmodified	1466.8245	0.82454882	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.425	89.337	2	0.00037995	77542	160511_QHF_FH_JSI12i_3	95.573	77.709			1.1524	1.1518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1524	1.1518	NaN	1	1	Median	26556000	10334000	16221000	0	0	0	0	0	0	0	0	0	26556000	10334000	16221000	3717	4997	3506	23035	31503	31503			1	
ALVLAQIR	0	Unmodified	882.56509	0.56508666	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.06			4					3	4	3	3	3	2	57.196	51.01	2	0.00029247	43330	160511_QHF_FH_JSI12i_3	113.08	60.447			0.92672	0.93813	9.0422	10	0	Median	1.1176	0.92247	8.4092	3	0	Median	0.78509	0.93126	6.5759	3	0	Median	0.95793	0.89107	11.162	2	0	Median	0.90011	1.0278	10.713	2	0	Median	393370000	203430000	189940000	94471000	41267000	53203000	97408000	58769000	38640000	118790000	58992000	59797000	82702000	44400000	38303000	3718	648	3507	23036;23037;23038;23039;23040;23041;23042;23043;23044;23045;23046	31504;31505;31506;31507;31508;31509;31510;31511;31512;31513	31512			10	
ALVLAQIRK	1	Unmodified	1010.66	0.66004968	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			47.559	38.949	3	0.060288	21539	160513_QHF_FH_JSI10Kac_6	20.304	1.5583			0.98607	1.1722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98607	1.1722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10302000	4162600	6139400	0	0	0	10302000	4162600	6139400	0	0	0	0	0	0	3719	648	3508	23047	31514	31514			0	
ALVLDCHYPEDEVGQEDEAESDIFSIR	0	Unmodified	3135.3979	0.39788908	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								2		1	91.468	91.002	3	4.4003E-16	78993	160511_QHF_FH_JSI12i_3	101.47	99.207			1.2557	1.5577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2557	1.5577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21783000	4955700	16827000	0	0	0	21783000	4955700	16827000	0	0	0	0	0	0	3720	2251	3509	23048;23049;23050	31515;31516;31517;31518	31518			4	
ALVLGGFAHMDTETK	1	Unmodified	1588.7919	0.79192807	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	1	2	63.617	63.427	2;3	2.2644E-06	54792	160511_QHF_FH_JSI12i_3	124.42	97.75			0.81558	0.83488	50.834	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7357	0.70677	NaN	1	0	Median	0.50037	0.51872	67.307	2	1	Median	196450000	96734000	99715000	0	0	0	0	0	0	64583000	30002000	34581000	131870000	66732000	65134000	3721	4586	3510	23051;23052;23053;23054	31519;31520;31521;31522;31523;31524	31523			6	
ALVLTEIGPK	1	Unmodified	1039.6277	0.6277465	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.51	3	2					3	4		1	3	4	4	69.051	61.339	2	5.3044E-11	52323	160511_QHF_FH_JSI12i_2	147.19	139.25			0.89775	0.99486	18.651	10	0	Median	0.81426	0.67246	NaN	1	0	Median	0.94504	1.1342	9.0411	2	0	Median	0.80704	0.78734	20.369	3	0	Median	0.91362	0.99486	6.0633	4	0	Median	301280000	163650000	137630000	6125600	3849700	2275900	10032000	5289900	4742400	68585000	41523000	27062000	216540000	112990000	103550000	3722	193	3511	23055;23056;23057;23058;23059;23060;23061;23062;23063;23064;23065;23066	31525;31526;31527;31528;31529;31530;31531;31532;31533;31534;31535;31536;31537;31538;31539	31526			15	
ALVMLLEVR	0	Unmodified	1042.6209	0.62088698	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			2						2	1	2		1	82.836	78.918	2	0.0026959	71786	160511_QHF_FH_JSI12i_3	84.568	75.354			0.94369	0.94177	13.906	4	3	Median	0.94168	0.82276	NaN	1	0	Median	0.83706	0.98236	17.315	2	2	Median	NaN	NaN	NaN	0	0	Median	0.96765	1.0205	NaN	1	1	Median	417670000	227010000	190660000	81421000	40787000	40634000	261680000	133330000	128350000	0	0	0	74566000	52895000	21671000	3723	3914;205	3512	23067;23068;23069;23070	31540;31541;31542;31543	31542			4	
ALVMLLEVR	0	Oxidation (M)	1058.6158	0.6158016	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	2	2	2	2	78.482	69.186	2	4.6588E-08	35539	160513_QHF_FH_JSI9Kac_5	145.63	107.4			0.82604	0.84756	11.345	7	2	Median	0.98402	0.83604	20.224	2	1	Median	0.70331	0.84378	13.595	2	0	Median	0.81647	0.79407	9.2186	2	0	Median	0.82604	0.89014	NaN	1	1	Median	362770000	196330000	166440000	104960000	51664000	53294000	156180000	85884000	70295000	44203000	27125000	17078000	57429000	31657000	25772000	3724	3914;205	3512	23071;23072;23073;23074;23075;23076;23077;23078	31544;31545;31546;31547;31548;31549;31550;31551;31552;31553	31545		84	10	
ALVNLAADPGLHETLLAADPGLPAR	0	Unmodified	2494.3544	0.35437219	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	3	3	94.688	94.508	3;4	2.023E-24	81993	160511_QHF_FH_JSI12i_3	143.9	136.62			1.1784	1.147	11.838	9	2	Median	1.3354	1.1478	5.655	2	2	Median	1.0069	1.2192	NaN	1	0	Median	1.1784	1.0905	11.269	3	0	Median	1.1466	1.147	17.805	3	0	Median	522700000	254900000	267800000	68403000	28847000	39556000	57495000	29000000	28495000	176690000	84691000	91994000	220120000	112360000	107750000	3725	4428	3513	23079;23080;23081;23082;23083;23084;23085;23086;23087	31554;31555;31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568	31566			15	
ALVNQLHER	0	Unmodified	1078.5883	0.5883413	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		17.903	17.158	2	5.797E-05	13840	160511_QHF_FH_JSI9i_3	97.431	51.06			1.5809	1.2562	19.517	3	2	Plateau	1.5809	1.2562	NaN	1	0	Median	0.71727	0.85383	NaN	1	1	Median	1.1404	1.0882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	171360000	76435000	94925000	51218000	14176000	37042000	55273000	32500000	22773000	64869000	29759000	35110000	0	0	0	3726	4852	3514	23088;23089;23090;23091	31569;31570;31571;31572	31572			4	
ALVNQVAATVQNR	0	Unmodified	1382.763	0.7630112	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				47.307	45.697	2	6.7208E-07	37474	160511_QHF_FH_JSI9i_3	91.855	17.693			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3727	3454	3515	23092	31573	31573			1	
ALVPDSVKK	2	Unmodified	955.57023	0.57023162	4893	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	3	0			5								1	1	3	21.71	21.464	2;3	0.00017697	17588	160511_QHF_FH_JSI12i_3	75.378	42.116			0.99846	1.0291	48.176	5	3	Median	NaN	NaN	NaN	0	0	Median	0.48652	0.56199	NaN	1	1	Median	1.37	1.2976	NaN	1	0	Median	0.99846	1.0291	49.182	3	2	Median	1134200000	584860000	549360000	0	0	0	68777000	47119000	21658000	253850000	114730000	139120000	811590000	423010000	388580000	3728	4893	3516	23093;23094;23095;23096;23097	31574;31575;31576;31577;31578	31576			5	
ALVPFVMIDHIPNTIR	0	Unmodified	1835.0128	0.012760298	3174	Q6YHU6	THADA	Thyroid adenoma-associated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	100.37	100.29	3	5.109E-05	83116	160511_QHF_FH_JSI10i_3	87.66	69.296			0.98258	1.0817	17.091	4	2	Median	NaN	NaN	NaN	0	0	Median	0.98258	1.1314	14.4	2	2	Median	1.2069	1.1452	NaN	1	0	Median	0.84431	0.84284	NaN	1	0	Median	135170000	63214000	71961000	0	0	0	69192000	32628000	36564000	36141000	15331000	20810000	29842000	15255000	14587000	3729	3174	3517	23098;23099;23100;23101	31579;31580;31581;31582;31583;31584	31581			6	
ALVPMFVR	0	Oxidation (M)	947.52626	0.52625831	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	1	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.241	56.408	2	0.023939	49855	160511_QHF_FH_JSI11i_3	50.039	31.309			1.0402	1.0892	21.117	4	0	Median	1.5717	1.2784	NaN	1	0	Median	1.0174	1.1886	NaN	1	0	Median	1.0636	0.99812	NaN	1	0	Median	0.79977	0.79541	NaN	1	0	Median	266020000	133570000	132450000	79981000	34160000	45820000	43348000	22949000	20399000	66323000	32295000	34028000	76367000	44164000	32203000	3730	1100	3518	23102;23103;23104;23105	31585;31586;31587	31585			3	
ALVPMFVR	0	Unmodified	931.53134	0.53134369	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	69.176	68.322	2	0.00018163	57201	160511_QHF_FH_JSI10i_3	122.15	122.15			0.8042	0.86302	6.3816	8	0	Median	1.1225	0.92302	7.6645	2	0	Median	0.75919	0.88846	3.2929	2	0	Median	0.84754	0.83176	4.4037	2	0	Median	0.77593	0.81651	0.59588	2	0	Median	3941300000	2090500000	1850900000	1132400000	532720000	599670000	778190000	413370000	364810000	1085000000	610000000	475000000	945740000	534370000	411370000	3731	1100	3518	23106;23107;23108;23109;23110;23111;23112;23113	31588;31589;31590;31591;31592;31593;31594;31595;31596;31597;31598;31599;31600	31591			13	
ALVPMFVRK	1	Unmodified	1059.6263	0.62630671	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				61.951	52.896	3	0.0044476	28126	160513_QHF_FH_JSI9Kac_6	54.712	45.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3732	1100	3519	23114	31601	31601			1	
ALVQCVHSVYIPNK	1	Unmodified	1626.8552	0.85519702	3688	Q8TB22	SPATA20	Spermatogenesis-associated protein 20	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.11	49.875	3	0.036414	42646	160511_QHF_FH_JSI12i_3	31.389	21.601			0.68915	0.69609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68915	0.69609	NaN	1	1	Median	36440000	20959000	15482000	0	0	0	0	0	0	0	0	0	36440000	20959000	15482000	3733	3688	3520	23115	31602	31602			1	
ALVQLPR	0	Unmodified	795.49667	0.49667274	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			44.601	43.055	2	0.0052708	35873	160511_QHF_FH_JSI10i_3	110.54	38.515			1.2408	1.4084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2408	1.4084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100570000	46205000	54362000	0	0	0	100570000	46205000	54362000	0	0	0	0	0	0	3734	3906	3521	23116	31603	31603			1	
ALVQNDTLLQVK	1	Unmodified	1340.7664	0.76636524	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			3	4	3	2	61.826	59.25	2	5.8458E-53	52068	160511_QHF_FH_JSI9i_2	212.28	170.85			0.96567	0.97389	13.405	12	2	Median	1.3708	1.1148	8.6334	3	1	Median	0.80796	0.93215	18.561	4	1	Median	0.96223	0.95424	16.802	3	0	Median	0.90187	0.97725	6.6461	2	0	Median	1637300000	826980000	810350000	301890000	136460000	165430000	487810000	262740000	225070000	390130000	197070000	193060000	457500000	230700000	226800000	3735	3834	3522	23117;23118;23119;23120;23121;23122;23123;23124;23125;23126;23127;23128	31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614;31615;31616;31617;31618;31619;31620	31617			17	
ALVQSLLAK	1	Unmodified	941.59097	0.59096706	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.439	55.605	2	1.8003E-05	45844	160511_QHF_FH_JSI9i_3	107.9	59.392			1.0781	1.0759	5.4195	4	0	Median	1.3031	1.0507	NaN	1	0	Median	0.96722	1.1223	NaN	1	0	Median	1.1573	1.1017	NaN	1	0	Median	1.0044	0.99415	NaN	1	0	Median	561520000	254500000	307020000	91868000	33650000	58217000	118570000	62926000	55640000	128030000	56196000	71836000	223060000	101730000	121330000	3736	5091	3523	23129;23130;23131;23132	31621;31622;31623;31624	31623			4	
ALVQTEDHLLLFLQQLAGK	1	Unmodified	2136.1943	0.19428972	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	102.1	102.03	3	7.3847E-11	90604	160511_QHF_FH_JSI10i_2	127.78	94.475			1.0974	1.1175	9.3226	2	0	Median	1.2466	1.0462	NaN	1	0	Median	0.96608	1.1937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131490000	67757000	63730000	50014000	24633000	25382000	81473000	43124000	38349000	0	0	0	0	0	0	3737	3562	3524	23133;23134;23135	31625;31626;31627	31626			3	
ALVSAQWVAEALR	0	Unmodified	1412.7776	0.77759863	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	3	1	92.312	91.792	2	7.9E-06	81722	160511_QHF_FH_JSI11i_3	153.95	121.63			0.98289	0.94388	59.844	7	6	Median	1.2051	0.97813	5.0408	2	2	Median	0.81374	0.97419	NaN	1	0	Median	1.0419	0.95603	90.71	3	3	Plateau	0.8754	0.88445	NaN	1	1	Median	645600000	332450000	313140000	122100000	49408000	72690000	91491000	48017000	43474000	324490000	174170000	150320000	107510000	60855000	46657000	3738	1256	3525	23136;23137;23138;23139;23140;23141;23142	31628;31629;31630;31631;31632;31633;31634;31635;31636	31628			9	
ALVSEEGEGK	1	Unmodified	1017.4979	0.49785453	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.033	14.579	2	0.00051136	12273	160511_QHF_FH_JSI12i_1	72.325	56.955			0.88138	0.82981	12.773	4	0	Median	0.92269	0.75327	NaN	1	0	Median	0.8811	1.0101	NaN	1	0	Median	0.88166	0.86489	NaN	1	0	Median	0.78149	0.79615	NaN	1	0	Median	429370000	260860000	168510000	102990000	65111000	37878000	120030000	67911000	52115000	121340000	75722000	45617000	85015000	52116000	32899000	3739	2455	3526	23143;23144;23145;23146	31637;31638;31639	31638			3	
ALVSEWK	1	Unmodified	831.44905	0.44905385	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		37.581	36.536	2	0.011199	30957	160511_QHF_FH_JSI11i_2	62.717	25.072			1.0964	0.93571	NaN	1	1	Median	1.0964	0.93571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111980000	48381000	63602000	111980000	48381000	63602000	0	0	0	0	0	0	0	0	0	3740	2734	3527	23147;23148	31640;31641	31641			2	
ALVSEWKEPQAK	2	Unmodified	1384.7351	0.73506511	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.88		4	6						1	2	3	4	2	38.672	37.177	2;3	3.8188E-11	31601	160511_QHF_FH_JSI12i_3	146.16	126.42			0.91192	0.91524	23.824	11	0	Median	0.93166	0.79753	19.571	2	0	Median	1.238	1.4498	15.813	3	0	Median	0.88428	0.85739	15.473	4	0	Median	0.90302	0.90876	1.0052	2	0	Median	2308500000	1156300000	1152200000	123890000	60924000	62964000	419400000	213740000	205660000	598270000	290460000	307810000	1166900000	591160000	575740000	3741	2734	3528	23149;23150;23151;23152;23153;23154;23155;23156;23157;23158;23159	31642;31643;31644;31645;31646;31647;31648;31649;31650;31651;31652;31653;31654;31655;31656;31657;31658;31659;31660;31661	31661			20	
ALVSGKPAESSAVAATEK	2	Unmodified	1714.9101	0.91012895	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	1	2	3	29.773	29.332	2;3	2.1588E-16	24662	160511_QHF_FH_JSI12i_3	155.94	133.14			0.9407	1.047	34.341	8	4	Median	1.7052	1.425	12.845	2	1	Median	1.0373	1.3	NaN	1	0	Median	0.76458	0.726	16.129	2	1	Median	0.82126	0.84322	35.491	3	2	Median	909240000	456040000	453200000	105740000	41298000	64438000	95407000	47858000	47549000	342220000	166190000	176030000	365870000	200690000	165180000	3742	653	3529	23160;23161;23162;23163;23164;23165;23166;23167	31662;31663;31664;31665;31666;31667;31668;31669;31670;31671	31669			10	
ALVSGYFLK	1	Unmodified	996.56442	0.56441796	3729	Q8TE96	DQX1	ATP-dependent RNA helicase DQX1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	47.929	46.973	2	0.00089301	40389	160511_QHF_FH_JSI11i_2	72.138	54.103			0.94926	1.0233	2.5244	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97981	1.0052	NaN	1	0	Median	0.91967	1.0417	NaN	1	0	Median	877730000	383120000	494610000	0	0	0	0	0	0	552600000	231450000	321150000	325130000	151670000	173460000	3743	3729	3530	23168;23169	31672;31673	31673			2	
ALVSNLISTK	1	Unmodified	1044.6179	0.61791009	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	53.27	52.428	2	0.0025124	44837	160511_QHF_FH_JSI12i_3	59.426	26.585			1.1314	1.1373	11.026	4	0	Median	1.3097	1.0999	NaN	1	0	Median	1.0446	1.2336	NaN	1	0	Median	1.2254	1.1759	NaN	1	0	Median	0.95005	0.95725	NaN	1	0	Median	183660000	86368000	97292000	19074000	8100900	10973000	26546000	15635000	10911000	55246000	22270000	32976000	82795000	40363000	42432000	3744	3811	3531	23170;23171;23172;23173	31674;31675	31675			1	
ALVSQCNLYMAAR	0	Unmodified	1495.7276	0.72755367	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	54.583	54.004	2	5.5151E-05	46370	160511_QHF_FH_JSI12i_2	76.465	52.083			1.1241	1.2166	8.603	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.2929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1876	1.1448	NaN	1	1	Median	53944000	29865000	24079000	0	0	0	22989000	14344000	8644500	0	0	0	30955000	15521000	15435000	3745	1665	3532	23174;23175;23176	31676;31677;31678	31676			3	
ALVTGYFMQVAHLER	0	Unmodified	1733.8923	0.89231081	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.3			3	1					10	3	4	5	2	83.479	76.932	2;3	5.7623E-121	41966	160513_QHF_FH_JSI10Kac_6	316.93	277.01			0.98779	1.0467	15.89	14	5	Median	1.3954	1.2344	21.473	3	1	Plateau	0.87248	1.0209	6.9649	4	2	Median	1.2853	1.2106	22.559	5	2	Linear	0.98779	1.0346	3.2627	2	0	Median	13628000000	6704400000	6923200000	2713400000	1138800000	1574700000	7887700000	4171100000	3716600000	2271700000	1021200000	1250500000	754830000	373350000	381480000	3746	300	3533	23177;23178;23179;23180;23181;23182;23183;23184;23185;23186;23187;23188;23189;23190	31679;31680;31681;31682;31683;31684;31685;31686;31687;31688;31689;31690;31691;31692;31693;31694;31695;31696;31697;31698;31699	31697			21	
ALVTGYFMQVAHLER	0	Oxidation (M)	1749.8872	0.88722543	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	77.986	69.272	3	1.4879E-25	38537	160513_QHF_FH_JSI10Kac_6	160.8	132.51			1.0035	1.0642	11.335	7	0	Median	1.2329	1.0623	0.26096	2	0	Median	0.97919	1.1722	NaN	1	0	Median	1.112	1.0672	26.161	2	0	Median	1.0017	1.0567	1.3995	2	0	Median	1386400000	674450000	711980000	525070000	244470000	280590000	436820000	220660000	216160000	167130000	80224000	86910000	257410000	129090000	128310000	3747	300	3533	23191;23192;23193;23194;23195;23196;23197	31700;31701;31702;31703;31704;31705	31705		117	6	
ALVTLSSGDMR	0	Unmodified	1148.586	0.58595803	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.809	46.398	2	0.0022983	42055	160511_QHF_FH_JSI11i_1	72.928	45.674			3.8565	3.6688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8565	3.6688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154590000	32376000	122210000	0	0	0	0	0	0	154590000	32376000	122210000	0	0	0	3748	1505	3534	23198	31706	31706			1	
ALVVPEPEPDSDSNQER	0	Unmodified	1880.8752	0.8752	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.928	47.383	2	2.3626E-07	42709	160511_QHF_FH_JSI11i_1	97.214	81.675			0.93366	1.0075	26.875	2	1	Median	NaN	NaN	NaN	0	0	Median	0.73971	0.83315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1785	1.2184	NaN	1	0	Median	85488000	50599000	34888000	0	0	0	34001000	23784000	10217000	0	0	0	51487000	26816000	24671000	3749	2988	3535	23199;23200;23201	31707;31708;31709;31710	31707			4	
ALVWVSLSLLSK	1	Unmodified	1314.7911	0.79112343	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.242	85.868	2	4.5947E-05	48086	160513_QHF_FH_JSI9Kac_6	91.855	78.818			1.0321	0.98087	23.237	4	2	Median	1.061	0.91742	NaN	1	0	Median	1.1872	1.4153	NaN	1	1	Median	0.85292	0.82867	NaN	1	1	Median	1.0041	1.0487	NaN	1	0	Median	224520000	108750000	115770000	45968000	20207000	25761000	75762000	33872000	41890000	69163000	32938000	36225000	33627000	21732000	11895000	3750	4288	3536	23202;23203;23204;23205	31711;31712;31713;31714;31715;31716	31712			6	
ALWAASR	0	Unmodified	773.41842	0.41842242	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	27.035	26.132	2	0.028305	21619	160511_QHF_FH_JSI12i_3	53.163	27.544			1.2734	1.0577	14.501	3	0	Plateau	1.3101	1.0577	NaN	1	0	Median	1.0567	1.2343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90207	0.92376	NaN	1	0	Median	288490000	133920000	154570000	124130000	51907000	72221000	97638000	52640000	44998000	0	0	0	66721000	29375000	37346000	3751	4193	3537	23206;23207;23208	31717;31718	31718			2	
ALWADSGIQNAYDR	0	Unmodified	1578.7427	0.74266969	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		5								1	1	1	2	61.076	60.081	2	9.251E-05	52154	160511_QHF_FH_JSI11i_2	112.15	105.71			1.1222	1.1202	11.54	5	2	Median	1.2874	1.129	NaN	1	0	Median	0.7564	0.92044	NaN	1	0	Median	1.1319	1.1202	NaN	1	0	Median	1.0539	1.1641	11.905	2	2	Median	189670000	93743000	95928000	31315000	14065000	17249000	43520000	22167000	21353000	47782000	25630000	22152000	67055000	31881000	35174000	3752	2531	3538	23209;23210;23211;23212;23213	31719;31720;31721;31722;31723	31722			5	
ALWCSEDK	1	Unmodified	1007.4382	0.43823117	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.584	27.221	2	0.0016392	22832	160511_QHF_FH_JSI11i_2	86.794	71.355			0.96922	0.99408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96922	0.99408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94353000	45139000	49214000	0	0	0	0	0	0	94353000	45139000	49214000	0	0	0	3753	5595	3539	23214	31724;31725	31725			2	
ALWEDEGVR	0	Unmodified	1073.5142	0.5141733	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	1	3	2	28.938	28.186	2;3	0.00029471	35730	160511_QHF_FH_JSI9i_2	94.302	59.495			1.1369	1.185	27.988	8	1	Median	1.6487	1.4307	24.412	2	1	Median	0.95791	1.1664	NaN	1	0	Median	1.1253	1.1345	13.252	3	0	Median	0.80852	0.90641	49.275	2	0	Median	1245800000	604000000	641820000	231060000	106150000	124910000	194230000	99470000	94758000	544500000	255960000	288530000	276030000	142410000	133620000	3754	2048	3540	23215;23216;23217;23218;23219;23220;23221;23222;23223	31726;31727;31728;31729;31730;31731;31732;31733;31734	31729			7	
ALWEETSFQLDR	0	Unmodified	1493.7151	0.71505795	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	74.943	74.103	2	0.00027644	65127	160511_QHF_FH_JSI11i_2	91.658	77.452			1.1755	1.1836	2.8213	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1551	1.1716	2.4427	2	2	Median	1.0222	1.1272	NaN	1	1	Median	326760000	151300000	175460000	0	0	0	0	0	0	251930000	112890000	139040000	74828000	38407000	36420000	3755	241	3541	23224;23225;23226;23227	31735;31736;31737;31738	31736			4	
ALWEVMLSYYR	0	Unmodified	1429.7064	0.70640752	4139	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.955	82.595	2	0.0029191	46429	160513_QHF_FH_JSI11Kac_6	67.704	42.849			1.0586	1.0141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0586	1.0141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29775000	14665000	15110000	0	0	0	0	0	0	29775000	14665000	15110000	0	0	0	3756	4139	3542	23228	31739	31739			1	
ALWFQGR	0	Unmodified	876.46062	0.46062159	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	56.197	51.134	2	0.00097038	44987	160511_QHF_FH_JSI11i_3	126.05	69.536			1.0029	0.89345	14.524	8	0	Median	1.0363	0.8561	12.428	2	0	Median	0.72606	0.84243	1.9263	2	0	Median	1.1325	1.0971	12.508	2	0	Median	0.89137	0.94696	16.63	2	0	Median	903060000	462500000	440560000	262400000	132980000	129420000	326960000	169240000	157710000	182580000	91629000	90949000	131130000	68650000	62479000	3757	1556	3543	23229;23230;23231;23232;23233;23234;23235;23236	31740;31741;31742;31743;31744;31745;31746;31747;31748;31749;31750	31740			11	
ALWGGPISLGAIAHWLLR	0	Unmodified	1930.0941	0.094122162	4739	Q9H6A9	PCNXL3	Pecanex-like protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.416	92.696	3	2.37E-56	54183	160513_QHF_FH_JSI10Kac_6	191.78	164.75			0.70868	0.83231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70868	0.83231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233490000	129120000	104370000	0	0	0	233490000	129120000	104370000	0	0	0	0	0	0	3758	4739	3544	23237	31751	31751			1	
ALWLAENQAQPMLR	0	Unmodified	1639.8504	0.850446	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	1	2	75.631	75.161	2;3	5.2753E-10	67062	160511_QHF_FH_JSI11i_3	187.97	162.59			0.92619	1.5815	24.863	6	5	Linear	0.94515	0.79512	NaN	1	1	Median	0.68627	0.84382	8.4305	2	2	Median	1.2118	1.1513	NaN	1	0	Median	1.1728	1.1687	35.432	2	2	Median	166110000	81431000	84678000	25062000	10530000	14532000	39409000	19681000	19728000	41799000	23258000	18541000	59838000	27962000	31877000	3759	2506	3545	23238;23239;23240;23241;23242;23243;23244;23245	31752;31753;31754;31755;31756;31757;31758;31759;31760	31752			9	
ALWLPMGD	0	Unmodified	901.43677	0.4367746	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	92.747	92.375	2	0.0091276	84112	160511_QHF_FH_JSI11i_1	56.51	51.07			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3760	3479	3546	23246;23247	31761;31762	31761			2	
ALWQSVQEQSAR	0	Unmodified	1401.7001	0.70007659	4125	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	42.241	41.305	2	0.010843	35372	160511_QHF_FH_JSI12i_2	47.228	34.416			0.38646	0.45132	41.636	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.36944	0.45132	NaN	1	0	Median	0.48072	0.48071	NaN	1	0	Median	0.89287	0.95605	NaN	1	0	Median	177820000	135490000	42331000	0	0	0	85991000	68619000	17372000	67483000	50068000	17416000	24344000	16800000	7543300	3761	4125	3547	23248;23249;23250	31763;31764;31765	31763			3	
ALWTGQYR	0	Unmodified	993.50321	0.50321468	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			39.88	38.379	2	0.0023888	31349	160511_QHF_FH_JSI9i_3	80.462	44.277			0.88984	0.85476	13.739	2	0	Median	1.1606	0.94197	NaN	1	0	Median	0.68224	0.77563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68977000	38446000	30531000	37152000	18689000	18463000	31825000	19757000	12068000	0	0	0	0	0	0	3762	1501	3548	23251;23252	31766;31767	31767			2	
ALWVISK	1	Unmodified	815.49052	0.49052473	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	2	1	63.42	57.088	2	0.012734	47772	160511_QHF_FH_JSI10i_3	68.915	41.598			1.103	1.1862	5.4449	6	0	Median	1.3837	1.185	NaN	1	0	Median	1.0306	1.1834	8.4546	2	0	Median	1.1867	1.1556	8.2658	2	0	Median	1.086	1.1875	NaN	1	0	Median	208140000	97089000	111050000	24667000	10331000	14336000	75230000	35803000	39426000	95365000	45529000	49837000	12879000	5425600	7453200	3763	2977	3549	23253;23254;23255;23256;23257;23258	31768;31769;31770;31771;31772;31773;31774;31775	31769			8	
ALWVKGQHSTTGK	2	Acetyl (K)	1453.7678	0.76776222	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.832	32.235	3	0.016991	17765	160513_QHF_FH_JSI11Kac_6	46.964	32.707			0.18156	0.1747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18156	0.1747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5441800	4884000	557740	0	0	0	0	0	0	5441800	4884000	557740	0	0	0	3764	378	3550	23259	31776	31776	194		1	
ALYALQDIVSR	0	Unmodified	1247.6874	0.68738664	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.854	72.706	2	0.00025292	63017	160511_QHF_FH_JSI12i_3	78.655	57.785			1.1072	1.0614	4.5362	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1923	1.096	NaN	1	0	Median	1.0282	1.0279	NaN	1	0	Median	83409000	38947000	44462000	0	0	0	0	0	0	40923000	17671000	23252000	42486000	21276000	21210000	3765	2637	3551	23260;23261	31777;31778;31779	31778			3	
ALYAMEIK	1	Unmodified	937.49429	0.49428948	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	49.54	48.8	2	0.0029113	41865	160511_QHF_FH_JSI12i_2	75.109	6.1943			17.798	20.173	12.796	2	2	Median	NaN	NaN	NaN	0	0	Median	14.791	18.428	NaN	1	1	Median	21.415	22.084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	966670000	51246000	915420000	0	0	0	385720000	21650000	364070000	580950000	29596000	551350000	0	0	0	3766	4886	3552	23262;23263;23264	31780;31781;31782	31780			3	
ALYDFEPENEGELGFK	1	Unmodified	1856.8469	0.84685999	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.5	0.5	2	2								1	2		1	81.09	80.751	2	1.3481E-07	73538	160511_QHF_FH_JSI12i_1	167.44	147.78			1.0516	1.1678	44.504	2	1	Median	NaN	NaN	NaN	0	0	Median	0.70865	0.85249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5606	1.5996	NaN	1	1	Median	192840000	72049000	120790000	0	0	0	64845000	38078000	26767000	0	0	0	127990000	33971000	94024000	3767	4332	3553	23265;23266;23267;23268	31783;31784;31785;31786;31787	31783			5	
ALYDFEVK	1	Unmodified	983.4964	0.49639797	3286	Q7Z6J0	SH3RF1	E3 ubiquitin-protein ligase SH3RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		18.951	18.448	2	0.017546	15815	160511_QHF_FH_JSI10i_1	48.504	0			1.2357	1.2125	20.469	3	0	Plateau	2.1171	1.7543	NaN	1	0	Median	1.025	1.2517	NaN	1	0	Median	1.2357	1.2125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	870730000	392610000	478130000	199640000	82085000	117550000	277560000	180690000	96866000	393540000	129830000	263710000	0	0	0	3768	3286	3554	23269;23270;23271	31788;31789;31790	31789			3	
ALYDTFSAFGNILSCK	1	Unmodified	1805.8658	0.86582129	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4		6	5	3	98.605	96.662	2;3	2.4255E-159	87976	160511_QHF_FH_JSI12i_3	340.57	312.36			0.9362	0.94635	32.889	14	6	Median	NaN	NaN	NaN	0	0	Median	1.0111	1.2145	35.961	6	4	Median	0.91835	0.87461	23.951	5	2	Median	1.3489	1.3729	22.786	3	0	Median	2116100000	1057400000	1058700000	0	0	0	423170000	226990000	196180000	868580000	468480000	400100000	824360000	361920000	462440000	3769	2385;1009	3555	23272;23273;23274;23275;23276;23277;23278;23279;23280;23281;23282;23283;23284;23285	31791;31792;31793;31794;31795;31796;31797;31798;31799;31800;31801;31802;31803;31804;31805;31806;31807;31808	31803			16	
ALYDYAGQEADELSFR	0	Unmodified	1846.8374	0.83735793	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								4	1	2	3	74.7	73.95	2	1.1179E-65	67117	160511_QHF_FH_JSI10i_1	235.31	213.64			1.0889	1.0606	15.865	9	5	Median	1.1806	0.98326	20.625	3	2	Median	0.88072	1.0291	NaN	1	0	Median	1.1245	1.0892	0.49031	2	0	Median	1.041	1.0754	18.612	3	3	Median	464950000	231600000	233340000	142800000	62178000	80626000	91653000	52981000	38672000	102840000	49745000	53094000	127650000	66700000	60950000	3770	5378	3556	23286;23287;23288;23289;23290;23291;23292;23293;23294;23295	31809;31810;31811;31812;31813;31814;31815;31816;31817;31818;31819;31820	31814			12	
ALYDYEGQEHDELSFK	1	Unmodified	1942.8585	0.85848731	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								1	2	5	2	59.22	58.476	2;3	7.8104E-13	50665	160511_QHF_FH_JSI11i_2	116.01	71.246			1.0291	1.1394	34.854	7	3	Median	1.736	1.5312	NaN	1	0	Median	0.92589	1.1237	NaN	1	0	Median	0.7903	0.74789	38.641	3	2	Median	1.1537	1.2259	10.353	2	1	Median	696400000	345650000	350750000	100910000	48486000	52428000	140940000	80531000	60414000	301670000	139020000	162650000	152880000	77617000	75259000	3771	5435	3557	23296;23297;23298;23299;23300;23301;23302;23303;23304;23305	31821;31822;31823;31824;31825;31826;31827;31828;31829;31830;31831;31832	31829			12	
ALYEAGER	0	Unmodified	907.43995	0.43994572	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.81	5.99	2	4	4				3	3		3	5	4	4	17.989	14.355	2	0.00024038	12605	160511_QHF_FH_JSI9i_2	117.16	80.139			0.99171	0.97901	10.169	16	3	Median	1.0993	0.88223	5.5204	3	0	Plateau	0.77808	0.93371	6.7155	5	3	Median	1.0217	0.99572	9.0975	4	0	Median	1.0443	1.1076	9.4085	4	0	Median	6171900000	3220400000	2951400000	698700000	359860000	338830000	2624200000	1463800000	1160400000	1439200000	728430000	710750000	1409900000	668390000	741470000	3772	805	3558	23306;23307;23308;23309;23310;23311;23312;23313;23314;23315;23316;23317;23318;23319;23320;23321	31833;31834;31835;31836;31837;31838;31839;31840;31841;31842;31843;31844;31845;31846;31847;31848;31849;31850;31851;31852;31853;31854;31855;31856;31857;31858	31849			26	
ALYEAGERR	0	Unmodified	1063.5411	0.54105675	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				11.228	10.517	2;3	0.00058543	8027	160511_QHF_FH_JSI9i_3	92.439	52.171			1.7436	1.4167	68.022	2	1	Median	1.7436	1.4167	68.022	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102830000	43416000	59413000	102830000	43416000	59413000	0	0	0	0	0	0	0	0	0	3773	805	3559	23322;23323	31859;31860;31861	31861			3	
ALYEHLTAK	1	Unmodified	1044.5604	0.56039521	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		6	8						8	6	6	5	5	28.624	24.769	2;3	3.6354E-08	20340	160511_QHF_FH_JSI12i_3	147.29	127.65			0.94093	0.9174	34.022	21	2	Median	1.0978	0.93799	13.749	5	0	Median	0.76119	0.90339	56.332	6	2	Median	0.94573	0.95232	25.67	5	0	Median	0.90745	0.9174	27.69	5	0	Median	5445900000	2975200000	2470700000	433100000	189270000	243840000	674960000	363190000	311760000	1924400000	1025200000	899160000	2413400000	1397500000	1015900000	3774	1544	3560	23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338;23339;23340;23341;23342;23343;23344;23345	31862;31863;31864;31865;31866;31867;31868;31869;31870;31871;31872;31873;31874;31875;31876;31877;31878;31879;31880;31881;31882;31883;31884;31885;31886;31887;31888;31889;31890;31891;31892	31885			31	
ALYEQNQSDVNEAK	1	Unmodified	1607.7427	0.74272927	2565	Q14691	GINS1	DNA replication complex GINS protein PSF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.928	23.381	2	4.0099E-52	20427	160511_QHF_FH_JSI10i_1	220.23	207.65			1.0301	1.067	8.9591	4	0	Median	1.4372	1.1809	NaN	1	0	Median	0.90011	1.0484	NaN	1	0	Median	1.0027	0.95111	NaN	1	0	Median	1.0583	1.086	NaN	1	0	Median	258640000	119950000	138690000	58289000	23614000	34674000	50951000	27877000	23074000	51232000	21545000	29687000	98169000	46918000	51250000	3775	2565	3561	23346;23347;23348;23349	31893;31894;31895;31896;31897;31898;31899;31900	31897			8	
ALYEQSLHIK	1	Unmodified	1200.6503	0.65027285	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	2	2	5	41.445	39.16	2;3	2.4402E-07	33598	160511_QHF_FH_JSI11i_2	122.33	93.168			0.86226	0.91815	66.742	6	3	Median	1.113	0.9565	NaN	1	0	Median	0.73467	0.88134	NaN	1	0	Median	1.012	1.0289	NaN	1	0	Median	0.61339	0.66587	103.47	3	3	Median	962860000	666240000	296620000	43602000	22849000	20753000	42762000	24611000	18152000	84584000	46036000	38548000	791910000	572740000	219170000	3776	1943	3562	23350;23351;23352;23353;23354;23355;23356;23357;23358;23359;23360;23361	31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912;31913	31906			13	
ALYESELADAR	0	Unmodified	1236.5986	0.59863121	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	42.047	41.449	2	0.00052907	37385	160511_QHF_FH_JSI11i_1	77.533	64.496			0.83897	0.96194	22.468	5	4	Median	1.6297	1.3458	NaN	1	1	Median	0.73431	0.87252	13.798	2	2	Median	1.2792	1.2439	NaN	1	1	Median	0.83897	0.89172	NaN	1	0	Median	235840000	129140000	106710000	22283000	11422000	10861000	109630000	61300000	48333000	58984000	30058000	28926000	44941000	26355000	18586000	3777	2207	3563	23362;23363;23364;23365;23366;23367	31914;31915;31916;31917;31918;31919	31915			6	
ALYESELADARR	0	Unmodified	1392.6997	0.69974224	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		35.196	34.393	3	3.0616E-05	30154	160511_QHF_FH_JSI10i_2	79.86	67.284			0.92498	1.1254	35.833	3	1	Median	0.70852	0.62127	NaN	1	0	Median	0.92498	1.1254	NaN	1	1	Median	1.1759	1.1831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216720000	101930000	114790000	17577000	9248700	8328100	139470000	69069000	70406000	59665000	23614000	36052000	0	0	0	3778	2207	3564	23368;23369;23370	31920;31921	31921			1	
ALYETELADAR	0	Unmodified	1250.6143	0.61428128	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.707	5	2	1							2	2	2	2	45.07	44.12	2	1.2092E-09	39761	160511_QHF_FH_JSI10i_1	135.55	28.95			1.5516	1.4457	57.197	7	3	Median	1.1643	0.95677	54.231	2	2	Median	1.7917	2.1269	54.605	2	0	Median	0.8178	0.81467	NaN	1	0	Median	1.945	2.1109	34.438	2	1	Median	1999700000	839660000	1160000000	397780000	121300000	276480000	593910000	328360000	265550000	132760000	73065000	59695000	875250000	316950000	558300000	3779	1180	3565	23371;23372;23373;23374;23375;23376;23377;23378	31922;31923;31924;31925;31926;31927;31928	31925			7	
ALYETELADARR	0	Unmodified	1406.7154	0.7153923	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.46		7	6					1	1	4	4	4	3	38.481	36.551	2;3	7.3899E-32	31866	160511_QHF_FH_JSI9i_2	199.11	135.07			0.97283	0.97154	15.482	15	0	Median	1.1336	0.99013	18.351	4	0	Median	0.8413	0.99903	15.201	4	0	Median	1.0162	0.99167	12.594	4	0	Median	1.0744	1.0922	19.847	3	0	Plateau	1989400000	1013900000	975470000	366710000	159190000	207530000	646790000	376700000	270080000	724150000	350950000	373200000	251740000	127070000	124670000	3780	1180	3566	23379;23380;23381;23382;23383;23384;23385;23386;23387;23388;23389;23390;23391;23392;23393	31929;31930;31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948	31939			20	
ALYFCGFPTLK	1	Unmodified	1315.6635	0.66348007	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.648	62.003	2	0.037539	56377	160511_QHF_FH_JSI12i_1	38.293	9.8941			1.0595	1.0782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0595	1.0782	NaN	1	0	Median	128830000	61568000	67261000	0	0	0	0	0	0	0	0	0	128830000	61568000	67261000	3781	3482	3567	23394	31949	31949			1	
ALYFITPTSK	1	Unmodified	1139.6227	0.62266112	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.05		3	3				4	2	1	2	3	4	4	68.21	62.485	2	0.00017566	54260	160511_QHF_FH_JSI11i_2	82.645	63.374			0.91334	0.98493	17.372	12	5	Median	1.205	1.0328	14.159	2	1	Median	0.86405	0.99056	21.697	3	1	Median	0.9885	0.97933	16.814	3	2	Median	0.82249	0.88806	20.881	4	1	Median	381230000	203540000	177700000	63669000	29008000	34661000	27688000	16535000	11152000	168890000	94867000	74020000	120990000	63126000	57863000	3782	104	3568	23395;23396;23397;23398;23399;23400;23401;23402;23403;23404;23405;23406;23407	31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964	31959			13	
ALYFYEQAITTPAMAVSHIMLESYKK	2	Unmodified	3004.5078	0.50783764	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	95.247	87.189	4	1.1057E-34	48871	160513_QHF_FH_JSI9Kac_6	154.14	147.64			0.96525	0.83703	9.0472	3	2	Plateau	1.0005	0.83703	NaN	1	0	Median	0.7552	0.90815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96525	1.0028	NaN	1	1	Median	398710000	243480000	155230000	132980000	71590000	61388000	144880000	97160000	47724000	0	0	0	120850000	74731000	46116000	3783	5448	3569	23408;23409;23410	31965;31966;31967;31968	31965			4	
ALYGLLMLLPQSSAFQLLSHR	0	Unmodified	2357.293	0.2929579	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	98.282	88.953	3	2.0603E-73	51061	160513_QHF_FH_JSI9Kac_6	204.78	180.77			1.1656	1.1568	4.4823	3	0	Median	1.4188	1.2113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1656	1.1074	NaN	1	0	Median	1.0906	1.1568	NaN	1	0	Median	1640400000	771070000	869360000	509230000	203600000	305630000	0	0	0	776780000	397010000	379770000	354410000	170460000	183960000	3784	2280	3570	23411;23412;23413	31969;31970;31971	31970			3	
ALYHAGLFLWHIGR	0	Unmodified	1652.894	0.89396579	3273	Q7Z4L5	TTC21B	Tetratricopeptide repeat protein 21B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.413	73.772	4	8.3706E-25	40320	160513_QHF_FH_JSI10Kac_6	155.15	142.77			0.76285	0.90097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76285	0.90097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119850000	68342000	51506000	0	0	0	119850000	68342000	51506000	0	0	0	0	0	0	3785	3273	3571	23414	31972	31972			1	
ALYHWYGANLALPRPVIK	1	Unmodified	2081.1575	0.1574507	3652	Q8NFA0	USP32	Ubiquitin carboxyl-terminal hydrolase 32	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			78.761	73.013	4	0.00016917	39858	160513_QHF_FH_JSI10Kac_6	105.14	88.999			1.1594	1.3453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1594	1.3453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107860000	45707000	62155000	0	0	0	107860000	45707000	62155000	0	0	0	0	0	0	3786	3652	3572	23415	31973	31973			1	
ALYIKSTMGK	2	Acetyl (K)	1152.6213	0.62128091	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	2	1	60.399	49.902	2	4.2107E-09	27075	160513_QHF_FH_JSI11Kac_6	129.1	96.779			0.44072	0.45952	85.635	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1066	1.3086	NaN	1	0	Median	0.25208	0.24449	47.022	2	1	Median	0.56519	0.61936	NaN	1	1	Median	50974000	39163000	11811000	0	0	0	4374500	1782000	2592500	43509000	35430000	8079300	3089800	1951000	1138800	3787	2036	3573	23416;23417;23418;23419	31974;31975;31976;31977	31974	2080;2081		4	
ALYIKSTMGK	2	Acetyl (K);Oxidation (M)	1168.6162	0.61619553	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	1	1			By MS/MS		14.5	0.5							1	1				2		46.357	35.96	2	0.00018633	20239	160513_QHF_FH_JSI11Kac_5	91.867	72.772			0.7649	0.75609	159.6	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7649	0.75609	159.6	2	1	Median	NaN	NaN	NaN	0	0	Median	14665000	10462000	4202400	0	0	0	0	0	0	14665000	10462000	4202400	0	0	0	3788	2036	3573	23420;23421	31978;31979;31980	31979	2080;2081	1695	3	
ALYIKSTMGKPQR	2	Acetyl (K)	1533.8337	0.8337333	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									3		2	1		50.995	42.014	3	0.012189	22825	160513_QHF_FH_JSI11Kac_6	50.897	43.858			0.22677	0.24573	1.2728	2	1	Median	NaN	NaN	NaN	0	0	Median	0.20284	0.24353	NaN	1	1	Median	0.25352	0.24795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26637000	15328000	11309000	0	0	0	14305000	5781200	8523500	12332000	9547000	2785100	0	0	0	3789	2036	3574	23422;23423;23424	31981;31982;31983	31981	2080;2081		3	
ALYIVHPTMFIK	1	Unmodified	1431.7948	0.7948286	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.61		4	8						9	6	5	5	5	78.554	74.54	2;3	9.1665E-25	38643	160513_QHF_FH_JSI11Kac_6	142.07	112.38			1.0313	0.95641	16.01	21	2	Median	1.2335	1.0516	13.579	6	2	Median	0.85798	1.0073	16.618	5	0	Median	0.9616	0.93445	15.329	5	0	Median	0.97316	1.0483	12.968	5	0	Median	4699800000	2342000000	2357800000	1005100000	401360000	603740000	1495900000	780800000	715130000	1229700000	710110000	519570000	969120000	449770000	519340000	3790	2261	3575	23425;23426;23427;23428;23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439;23440;23441;23442;23443;23444;23445	31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994;31995;31996;31997;31998;31999;32000;32001;32002;32003;32004;32005;32006;32007;32008;32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019	31991			35	
ALYIVHPTMFIK	1	Oxidation (M)	1447.7897	0.78974322	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	2	1	3	73.439	66.023	3	6.2351E-06	34675	160513_QHF_FH_JSI12Kac_6	95.477	84.378			0.83255	0.92659	40.79	6	2	Median	0.56783	0.47499	NaN	1	0	Median	0.87449	1.0094	NaN	1	0	Median	0.48718	0.45894	NaN	1	1	Median	1.1012	1.1465	15.852	3	1	Plateau	500460000	289800000	210670000	136180000	75840000	60342000	53582000	24748000	28834000	151300000	107030000	44265000	159400000	82173000	77226000	3791	2261	3575	23446;23447;23448;23449;23450;23451;23452	32020;32021;32022;32023;32024;32025;32026;32027	32024		1868	7	
ALYLIATNGTPELQNPEK	1	Unmodified	1971.0313	0.031306714	2366	Q13177;Q13153	PAK2;PAK1	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	8.5	6.5		2						2				3	1	77.583	73.435	2;3	6.7031E-05	65068	160511_QHF_FH_JSI12i_2	65.716	56.058			1.2963	1.2711	26.841	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3453	1.3314	6.5543	2	0	Median	0.76009	0.84227	NaN	1	0	Median	97896000	51284000	46612000	0	0	0	0	0	0	63969000	31282000	32687000	33926000	20001000	13925000	3792	2366	3576	23453;23454;23455;23456	32028;32029;32030;32031;32032;32033	32028			6	
ALYLVNWIWR	0	Unmodified	1332.7343	0.73427725	1407	P33947	KDELR2	ER lumen protein-retaining receptor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.549	86.175	2	1.9106E-33	50573	160513_QHF_FH_JSI10Kac_6	194.27	143.4			0.89662	0.89317	25.235	4	1	Median	0.85392	0.72559	NaN	1	1	Median	0.76558	0.88108	NaN	1	0	Median	0.94146	0.90543	NaN	1	0	Median	1.2663	1.3262	NaN	1	0	Median	450030000	249550000	200480000	94714000	54883000	39832000	183960000	106310000	77653000	121030000	70678000	50355000	50323000	17679000	32645000	3793	1407	3577	23457;23458;23459;23460	32034;32035;32036;32037;32038;32039	32039			6	
ALYNQYIHFK	1	Unmodified	1295.6663	0.66625727	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	16	0									3	1	1		1	63.181	54.093	3	0.00038232	28470	160513_QHF_FH_JSI12Kac_6	61.56	51.036			0.90135	1.0534	12.38	3	0	Median	1.2892	1.1082	NaN	1	0	Median	0.90135	1.0534	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79368	0.87589	NaN	1	0	Median	61364000	27824000	33539000	23237000	9091100	14146000	24302000	11932000	12369000	0	0	0	13825000	6800700	7024000	3794	5458	3578	23461;23462;23463	32040	32040			1	
ALYPSSVGQPFQGAYLEINK	1	Unmodified	2181.1106	0.11061967	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	88.153	87.611	3	3.1439E-05	75656	160511_QHF_FH_JSI12i_2	69.361	59.831			2.8768	3.1989	17.74	2	2	Median	NaN	NaN	NaN	0	0	Median	2.9649	3.6264	NaN	1	1	Median	2.7913	2.8217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72341000	22745000	49596000	0	0	0	43988000	14953000	29035000	28353000	7792500	20561000	0	0	0	3795	376	3579	23464;23465;23466;23467;23468	32041;32042;32043;32044;32045	32041			5	
ALYPVIPR	0	Unmodified	927.55419	0.55418762	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0.756	2	3	2							1	3	2	1	54.27	53.491	2	0.0007062	47293	160511_QHF_FH_JSI10i_2	99.384	76.892			1.0738	1.0738	8.5757	6	0	Median	1.2092	1.0605	NaN	1	0	Median	0.91881	1.0846	13.046	2	0	Median	1.0226	1.0223	8.7061	2	0	Median	1.1357	1.1675	NaN	1	0	Median	807170000	376630000	430540000	103740000	47655000	56086000	234560000	126590000	107980000	161760000	68565000	93196000	307100000	133820000	173290000	3796	3709	3580	23469;23470;23471;23472;23473;23474;23475	32046;32047;32048;32049;32050;32051;32052;32053;32054	32053			8	
ALYTFEPR	0	Unmodified	995.50763	0.50763136	3898	Q92882	OSTF1	Osteoclast-stimulating factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	45.645	45.099	2	0.0014763	38820	160511_QHF_FH_JSI11i_2	94.662	63.433			1.1764	0.9565	9.3993	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1903	1.0935	NaN	1	0	Median	1.0103	1.0472	12.816	2	0	Median	291780000	145340000	146440000	0	0	0	0	0	0	49003000	19152000	29851000	242780000	126190000	116590000	3797	3898	3581	23476;23477;23478;23479	32055;32056;32057;32058	32057			4	
ALYTLSGETEELSR	0	Unmodified	1567.773	0.77296676	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			58.887	58.011	2	0.0010694	51309	160511_QHF_FH_JSI10i_2	63.283	49.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3798	5195	3582	23480	32059	32059			1	
ALYTLVNK	1	Unmodified	920.53312	0.53311783	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.24		4	6					1	4	3	4	4	4	45.818	42.138	2	0.00020461	35922	160511_QHF_FH_JSI12i_3	134.66	107.7			0.79548	0.88523	55.349	15	10	Median	1.5958	1.3148	93.766	3	2	Median	0.72596	0.87369	38.89	4	2	Median	0.9132	0.86445	38.035	4	3	Median	0.90907	0.95118	50.674	4	3	Median	2462900000	1374000000	1088900000	82412000	36894000	45518000	289070000	168370000	120700000	870170000	491280000	378890000	1221300000	677410000	543840000	3799	3844	3583	23481;23482;23483;23484;23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495	32060;32061;32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072;32073;32074;32075	32073			16	
ALYTYESK	1	Unmodified	973.47566	0.47566253	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.951	24.145	2	0.001895	20155	160511_QHF_FH_JSI11i_2	95.531	82.494			0.61636	0.64369	16.95	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72566	0.72565	NaN	1	1	Median	0.52353	0.57099	NaN	1	1	Median	161010000	84474000	76537000	0	0	0	0	0	0	103200000	52522000	50676000	57813000	31952000	25861000	3800	3862	3584	23496;23497	32076;32077	32077			2	
ALYYLQIHPQELR	0	Unmodified	1642.8831	0.88312633	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.56		7	8					1	9	7	8	5	5	71.159	66.916	2;3	3.8811E-77	36340	160513_QHF_FH_JSI10Kac_6	280.03	211.14			1.0123	0.99146	16.05	23	6	Median	1.3441	1.0773	13.117	5	1	Median	0.86784	0.98994	23.221	8	5	Median	1.0463	0.99146	5.4685	5	0	Median	0.89129	0.93036	2.9332	5	0	Median	21895000000	11874000000	10021000000	2697200000	1269000000	1428100000	10405000000	6085600000	4319700000	4830900000	2384500000	2446500000	3961300000	2134500000	1826800000	3801	2734	3585	23498;23499;23500;23501;23502;23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522	32078;32079;32080;32081;32082;32083;32084;32085;32086;32087;32088;32089;32090;32091;32092;32093;32094;32095;32096;32097;32098;32099;32100;32101;32102;32103;32104;32105;32106;32107;32108;32109;32110;32111;32112;32113;32114;32115;32116;32117;32118	32116			41	
ALYYWNNEYIMSLISDNAAR	0	Unmodified	2406.1314	0.13143146	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				96.137	87.071	3	0.00047119	49548	160513_QHF_FH_JSI9Kac_6	92.31	78.579			1.0508	0.90558	NaN	1	1	Median	1.0508	0.90558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69100000	24868000	44233000	69100000	24868000	44233000	0	0	0	0	0	0	0	0	0	3802	2570	3586	23523	32119	32119			1	
AMAAEAEASR	0	Unmodified	1005.4549	0.45494386	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	10.436	9.9966	2	2.2811E-07	7936	160511_QHF_FH_JSI12i_1	115.71	84.641			0.92844	0.92566	10.011	8	0	Median	1.0691	0.90563	7.6984	2	0	Median	0.69739	0.84597	11.821	2	0	Median	0.90656	0.91192	10.969	2	0	Median	0.92844	0.99981	9.9865	2	0	Median	1993200000	1050200000	943030000	410140000	209700000	200440000	559930000	335060000	224870000	542440000	266710000	275720000	480700000	238700000	242000000	3803	1286	3587	23524;23525;23526;23527;23528;23529;23530;23531	32120;32121;32122;32123;32124;32125;32126;32127;32128;32129;32130;32131;32132;32133	32123			14	
AMAAVPQDVVR	0	Unmodified	1155.607	0.60702783	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.111	41.626	2	0.00023086	37854	160511_QHF_FH_JSI12i_1	101.64	76.721			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3804	3951	3588	23532;23533	32134;32135	32135			2	
AMADALLER	0	Unmodified	988.50117	0.50116577	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.06	4	4	3				3	3		3	5	4	5	48.198	43.855	2	3.5315E-05	39438	160511_QHF_FH_JSI10i_1	100.02	63.832			1.053	1.0595	11.278	17	0	Median	1.2713	1.0595	18.581	3	0	Median	0.94775	1.1261	11.765	5	0	Median	1.0893	1.0607	10.188	4	0	Median	1.012	1.2266	10.77	5	0	Linear	5389000000	2551300000	2837700000	949090000	396370000	552730000	1352500000	658440000	694110000	1670800000	816820000	853930000	1416600000	679690000	736910000	3805	1415	3589	23534;23535;23536;23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550	32136;32137;32138;32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158	32145			21	
AMADELSEK	1	Unmodified	992.44846	0.4484615	2202	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	22.18	21.653	2	0.00085366	19010	160511_QHF_FH_JSI12i_1	72.879	55.494			0.73468	0.67869	25.307	4	0	Median	0.77345	0.63538	NaN	1	0	Median	0.43262	0.49855	NaN	1	0	Median	0.93222	0.91356	NaN	1	0	Median	0.69785	0.72494	NaN	1	0	Median	381390000	211850000	169540000	100480000	56045000	44433000	85668000	57993000	27675000	100400000	45247000	55149000	94848000	52561000	42287000	3806	2202	3590	23551;23552;23553;23554	32159;32160;32161	32159			3	
AMADPEVQQIMSDPAMR	0	Oxidation (M)	1904.8431	0.84305371	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	61.508	60.765	2;3	1.3545E-06	48106	160511_QHF_FH_JSI12i_1	90.653	67.736			1.009	1.1677	3.694	4	0	Linear	1.3359	1.0967	NaN	1	0	Median	1.0039	1.178	NaN	1	0	Median	1.2289	1.1925	NaN	1	0	Median	1.1167	1.1575	NaN	1	0	Median	362440000	165680000	196760000	69189000	20528000	48661000	122540000	61348000	61188000	75580000	34603000	40976000	95140000	49202000	45937000	3807	1386	3591	23555;23556;23557;23558;23559;23560;23561	32162;32163;32164;32165;32166;32167;32168;32169	32165		1028;1029;1030	8	
AMADPEVQQIMSDPAMR	0	Unmodified	1888.8481	0.84813909	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	71.429	70.901	2;3	1.7335E-65	64658	160511_QHF_FH_JSI12i_1	229.32	197.07			1.0652	1.0598	3.4018	8	0	Median	1.281	1.0413	3.284	2	0	Median	0.86977	1.0302	3.2096	2	0	Median	1.0858	1.0488	3.2782	2	0	Median	1.0525	1.093	3.0054	2	0	Median	4628700000	2255400000	2373300000	1299900000	569230000	730650000	969320000	540570000	428750000	1268400000	628240000	640170000	1091100000	517410000	573710000	3808	1386	3591	23562;23563;23564;23565;23566;23567;23568;23569	32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180;32181;32182	32176			13	
AMAEDLGDQDK	1	Unmodified	1191.5078	0.50776729	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.038	20.908	2	0.0014004	18006	160511_QHF_FH_JSI11i_1	68.557	52.413			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3809	3839	3592	23570	32183	32183			1	
AMALSYDQR	0	Unmodified	1053.4913	0.49132937	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	30.796	29.948	2	0.00031356	25258	160511_QHF_FH_JSI12i_2	86.953	54.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3810	1718	3593	23571;23572	32184;32185	32184			2	
AMAPLHPHPAGMR	0	Unmodified	1384.6856	0.68562927	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			23.452	22.175	3	0.010162	17917	160511_QHF_FH_JSI9i_3	37.94	27.614			0.8085	0.78858	29.773	2	2	Median	1.1808	0.97336	NaN	1	1	Median	0.55359	0.63887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42403000	20558000	21844000	27853000	11970000	15883000	14549000	8588400	5960800	0	0	0	0	0	0	3811	4538	3594	23573;23574	32186;32187	32187			2	
AMAPTSPQI	0	Unmodified	914.45315	0.45315295	4544	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.258	43.778	2	0.004094	39921	160511_QHF_FH_JSI12i_1	57.463	47.714			0.8736	0.84788	2.7544	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75838	0.88756	NaN	1	0	Median	0.8736	0.84788	NaN	1	0	Median	0.81716	0.84474	NaN	1	0	Median	227000000	119600000	107390000	0	0	0	72627000	36558000	36069000	80971000	44872000	36099000	73398000	38171000	35227000	3812	4544	3595	23575;23576;23577;23578	32188;32189;32190;32191	32189			3	
AMAQTAIK	1	Unmodified	832.44767	0.44767364	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		14.17	13.7	2	0.03346	11159	160511_QHF_FH_JSI9i_2	49.325	31.764			1.3933	1.2775	1.2696	2	1	Median	1.544	1.2891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2573	1.2661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	179490000	82986000	96505000	63897000	22557000	41339000	0	0	0	115590000	60428000	55166000	0	0	0	3813	3897	3596	23579;23580	32192;32193	32192			2	
AMAVLESLR	0	Unmodified	988.53755	0.53755128	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	56.476	55.682	2	1.9323E-05	49250	160511_QHF_FH_JSI11i_3	107.29	51.619			1.3339	1.2872	35.982	7	0	Median	1.388	1.1792	NaN	1	0	Median	1.4804	1.8147	43.299	2	0	Median	1.2184	1.1925	10.804	2	0	Median	0.93437	1.0034	44.58	2	0	Median	1547600000	668500000	879050000	141270000	73488000	67786000	257740000	128720000	129010000	566900000	225760000	341130000	581650000	240530000	341120000	3814	1609	3597	23581;23582;23583;23584;23585;23586;23587	32194;32195;32196;32197;32198;32199;32200;32201;32202;32203;32204	32195			11	
AMDDYSVIGR	0	Unmodified	1125.5125	0.51245874	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.315	41.847	2	0.040549	37787	160511_QHF_FH_JSI11i_1	45.161	35.947			1.1621	1.2229	0.88763	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0419	1.2404	NaN	1	1	Median	1.2939	1.2229	NaN	1	1	Median	1.1621	1.2204	NaN	1	1	Median	162260000	69535000	92727000	0	0	0	53715000	20927000	32788000	62880000	27722000	35158000	45667000	20887000	24781000	3815	1896	3598	23588;23589;23590	32205;32206;32207	32205			3	
AMDEMNGK	1	Unmodified	894.35754	0.357538	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	10.247	9.895	2	0.0014339	7569	160511_QHF_FH_JSI10i_1	89.55	62.588			0.82811	0.82374	28.313	5	0	Median	1.5857	1.3124	NaN	1	0	Median	0.76379	0.89965	12.467	2	0	Median	0.82811	0.80521	NaN	1	0	Median	0.60085	0.60813	NaN	1	0	Median	982980000	472700000	510280000	195580000	79128000	116460000	341440000	167930000	173510000	267080000	110000000	157080000	178880000	115640000	63236000	3816	326	3599	23591;23592;23593;23594;23595	32208;32209;32210;32211	32210			4	
AMDFVSQEQGEMVMLYDLFFAFLQTGNYK	1	Unmodified	3421.5709	0.57090818	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.5	6.44		3	1	1					3	3	4	1		105.23	100.94	3;4	2.7642E-178	58954	160513_QHF_FH_JSI10Kac_6	279.69	268.79			0.95933	1.0639	15.173	7	3	Median	1.2705	1.0908	20.935	2	1	Median	0.92623	1.1035	8.1996	4	1	Median	0.85124	0.8346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	485410000	249200000	236210000	64571000	17848000	46723000	415420000	227550000	187870000	5413600	3802600	1611000	0	0	0	3817	1544	3600	23596;23597;23598;23599;23600;23601;23602;23603	32212;32213;32214;32215;32216;32217;32218;32219;32220;32221;32222;32223;32224	32222			13	
AMDFYDPAR	0	Unmodified	1084.4648	0.46478027	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	47.604	46.773	2	0.00013513	40336	160511_QHF_FH_JSI11i_2	90.657	85.901			1.0114	1.0379	7.3294	8	0	Median	1.2975	1.0993	3.781	2	0	Median	0.81179	0.97601	9.8665	2	0	Median	1.027	1.0174	1.6624	2	0	Median	0.9566	1.029	10.762	2	0	Median	1201300000	624250000	577040000	199600000	101970000	97633000	299180000	170100000	129080000	428050000	213920000	214130000	274450000	138260000	136190000	3818	678	3601	23604;23605;23606;23607;23608;23609;23610;23611	32225;32226;32227;32228	32227			3	
AMDLAQAGSTVESK	1	Unmodified	1406.6711	0.67114423	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	2	2	43.144	41.029	2	8.0824E-07	36760	160511_QHF_FH_JSI10i_1	136.93	126.48			1.2822	1.2979	17.045	6	4	Median	1.9909	1.6283	NaN	1	1	Median	0.96916	1.1257	NaN	1	0	Median	1.3923	1.399	22.767	2	1	Median	1.2272	1.2861	13.461	2	2	Median	734320000	341070000	393250000	128290000	43014000	85280000	154040000	79053000	74983000	139520000	73668000	65850000	312470000	145340000	167130000	3819	2904	3602	23612;23613;23614;23615;23616;23617	32229;32230;32231;32232;32233;32234;32235;32236;32237;32238	32237			10	
AMDPAVPNMMIDAAK	1	Unmodified	1573.7303	0.73025579	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	72.14	71.624	2;3	6.3309E-05	65187	160511_QHF_FH_JSI12i_1	116.24	107.23			0.95371	0.9814	8.3749	8	0	Median	1.2883	1.0652	4.1793	2	0	Median	0.80369	0.92954	10.626	2	0	Median	0.94277	0.92511	5.403	2	0	Median	0.97999	1.0102	7.2028	2	0	Median	751100000	357990000	393110000	208500000	88763000	119730000	153050000	71154000	81892000	205750000	110510000	95246000	183800000	87565000	96236000	3820	432	3603	23618;23619;23620;23621;23622;23623;23624;23625	32239;32240;32241;32242;32243;32244;32245;32246;32247;32248;32249;32250;32251;32252;32253	32242			13	
AMDPQDLQNTEVPIATTAK	1	Unmodified	2041.999	0.99902031	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	65.521	65.054	3	6.1669E-06	58879	160511_QHF_FH_JSI10i_1	90.22	80.163			1.0028	1.0182	26.768	4	3	Median	NaN	NaN	NaN	0	0	Median	0.73573	0.86192	NaN	1	1	Median	1.2476	1.1906	37.753	2	2	Median	1.0674	1.1373	NaN	1	0	Median	217480000	105610000	111870000	0	0	0	47381000	25077000	22304000	109270000	50874000	58395000	60836000	29661000	31175000	3821	4678	3604	23626;23627;23628;23629;23630	32254;32255;32256;32257;32258;32259	32258			6	
AMDQEITVNPQFVQK	1	Unmodified	1746.8611	0.86107026	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	62.027	61.453	2;3	8.7658E-98	55721	160511_QHF_FH_JSI11i_1	257.79	232.32			1.0147	0.99023	9.9577	7	3	Median	1.183	0.97115	NaN	1	0	Median	0.80942	0.94968	6.3277	2	1	Median	1.0049	0.97824	1.723	2	0	Median	1.1183	1.1511	9.9929	2	2	Median	980860000	477270000	503590000	138900000	66042000	72862000	277520000	155300000	122210000	288250000	134860000	153390000	276190000	121070000	155120000	3822	5448	3605	23631;23632;23633;23634;23635;23636;23637	32260;32261;32262;32263;32264;32265;32266;32267;32268;32269	32261			10	
AMDQVNALCEQLVK	1	Acetyl (Protein N-term)	1659.796	0.79602716	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		92.812	92.462	2	0.0080356	84163	160511_QHF_FH_JSI11i_1	42.809	33.911			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3823	4831	3606	23638	32270	32270			1	
AMDSDWFAENYMGR	0	Unmodified	1691.6708	0.67082665	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.843	77.009	2	1.1633E-21	66369	160511_QHF_FH_JSI12i_2	178.81	171.88			1.0292	1.0921	6.264	4	1	Median	1.4811	1.2249	NaN	1	1	Median	0.8738	1.0688	NaN	1	0	Median	1.077	1.0788	NaN	1	0	Median	0.98346	1.1055	NaN	1	0	Median	191330000	93446000	97888000	35060000	10537000	24523000	38824000	23717000	15107000	67932000	35517000	32415000	49519000	23676000	25843000	3824	1848	3607	23639;23640;23641;23642	32271;32272;32273;32274;32275;32276;32277;32278;32279	32272			9	
AMDSDWFAENYMGRK	1	Unmodified	1819.7658	0.76578967	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	67.784	67.044	3	8.1119E-06	59557	160511_QHF_FH_JSI11i_3	110.55	106.31			1.1418	1.1761	5.9718	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0112	1.1275	NaN	1	0	Median	1.2892	1.2268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101550000	39741000	61804000	0	0	0	21045000	9202000	11843000	80500000	30539000	49961000	0	0	0	3825	1848	3608	23643;23644;23645	32280;32281;32282;32283	32280			4	
AMDVYQK	1	Unmodified	853.40039	0.4003891	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	6.08	6	1				1	3			2	2	4	3	19.142	16.564	2	0.0035003	14183	160511_QHF_FH_JSI10i_1	104.11	57.74			1.0458	1.1108	49.498	10	5	Median	0.99606	0.81747	100.83	2	2	Median	0.67004	0.79274	NaN	1	0	Median	1.2835	1.2711	53.699	4	3	Median	1.0289	1.081	17.508	3	0	Median	2837900000	1461100000	1376800000	655600000	371320000	284280000	555200000	299090000	256120000	1013800000	470660000	543180000	613260000	320030000	293230000	3826	1386	3609	23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656	32284;32285;32286;32287;32288;32289;32290;32291;32292;32293;32294;32295;32296;32297;32298;32299	32290			16	
AMEAAQLADDLK	1	Unmodified	1274.6177	0.61765209	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	57.717	57.065	2	1.4219E-05	51901	160511_QHF_FH_JSI12i_1	114.86	103.27			0.88113	0.83946	6.7799	4	0	Median	0.97693	0.80927	NaN	1	0	Median	0.66613	0.77678	NaN	1	0	Median	0.92892	0.90157	NaN	1	0	Median	0.8358	0.87076	NaN	1	0	Median	296150000	151980000	144170000	67110000	35515000	31596000	72243000	38001000	34242000	81569000	39260000	42310000	75227000	39200000	36027000	3827	2988	3610	23657;23658;23659;23660;23661	32300;32301;32302;32303;32304;32305;32306;32307;32308	32303			9	
AMEALATAEQACK	1	Unmodified	1392.6377	0.63773561	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.408	38.125	2	0.05313	34417	160511_QHF_FH_JSI11i_1	63.864	55.938			0.76216	0.74258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76216	0.74258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52914000	28207000	24707000	0	0	0	0	0	0	52914000	28207000	24707000	0	0	0	3828	5213	3611	23662	32309	32309			0	
AMEAVAAQGK	1	Unmodified	974.48552	0.48551571	1144	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.54	5	4	4			4	3			4	6	5	5	16.233	12.69	2	5.5995E-14	11225	160511_QHF_FH_JSI11i_1	182.39	104.64			0.97355	0.98313	60.951	20	4	Median	1.0671	1.0059	7.0428	4	1	Linear	0.83164	0.99843	57.398	6	2	Median	0.99484	0.97464	107.17	5	1	Median	0.81958	0.90805	24.312	5	0	Median	25156000000	13850000000	11306000000	4241900000	2480000000	1761900000	9753500000	5607300000	4146100000	5198800000	2893300000	2305400000	5962200000	2869600000	3092600000	3829	1144	3612	23663;23664;23665;23666;23667;23668;23669;23670;23671;23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682	32310;32311;32312;32313;32314;32315;32316;32317;32318;32319;32320;32321;32322;32323;32324;32325;32326;32327;32328;32329;32330;32331;32332;32333;32334;32335;32336;32337	32312			28	
AMEAVAAQGK	1	Oxidation (M)	990.48043	0.48043033	1144	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.81	8	4			3	3	3			2	8	6	5	9.9851	6.3545	2	5.7678E-24	11582	160511_QHF_FH_JSI12i_1	160.88	108.2			0.9065	0.97941	55.54	20	4	Median	1.533	1.2666	37.34	2	0	Median	0.84748	1.0082	81.26	8	3	Median	0.98373	0.96863	37.382	6	1	Median	0.85698	0.9328	5.6984	4	0	Median	4471500000	2216100000	2255300000	477100000	209910000	267190000	1977000000	1068100000	908900000	1518000000	682520000	835470000	499390000	255610000	243780000	3830	1144	3612	23683;23684;23685;23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697;23698;23699;23700;23701;23702;23703	32338;32339;32340;32341;32342;32343;32344;32345;32346;32347;32348;32349;32350;32351;32352;32353;32354;32355;32356;32357;32358;32359;32360;32361;32362;32363;32364;32365;32366;32367	32345		781	29	
AMEDPGVRDTMLQALR	0	Unmodified	1801.8815	0.88148813	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1		By MS/MS	By matching	By matching	3	0			3								1	1	1	65.057	64.461	3	0.022756	54027	160511_QHF_FH_JSI10i_3	36.193	29.756			1.0916	1.0885	10.62	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0151	1.235	NaN	1	0	Median	1.174	1.0885	NaN	1	0	Median	0.99247	1	NaN	1	0	Median	210660000	111310000	99345000	0	0	0	81864000	43482000	38383000	99435000	50275000	49161000	29358000	17557000	11802000	3831	3860	3613	23704;23705;23706	32368;32369	32369			2	
AMEEMNGK	1	Unmodified	908.37319	0.37318807	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.166	9.7858	2	0.00011034	7258	160511_QHF_FH_JSI9i_1	128.57	71.103			0.90064	1.1615	22.344	4	0	Linear	1.1876	0.99226	NaN	1	0	Median	0.97555	1.1607	NaN	1	0	Median	0.83148	0.80113	NaN	1	0	Median	0.6673	0.70159	NaN	1	0	Median	1339400000	724590000	614830000	335030000	139590000	195450000	425910000	231400000	194510000	332490000	199160000	133330000	245980000	154440000	91541000	3832	423	3614	23707;23708;23709;23710	32370;32371;32372;32373;32374;32375;32376	32376			7	
AMEGAGTDEK	1	Oxidation (M)	1023.4179	0.41788965	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	5.0986	0.15291	2	2.0949E-07	2333	160511_QHF_FH_JSI12i_1	120.31	77.24			0.82851	0.82151	33.507	9	2	Median	2.6005	2.1594	NaN	1	1	Median	0.73464	0.86094	22.281	2	0	Median	0.82597	0.81218	1.3956	3	1	Median	0.8636	0.88781	11.867	3	0	Plateau	326100000	153360000	172740000	87859000	27563000	60295000	6047000	3767000	2280000	110610000	57685000	52929000	121580000	64344000	57233000	3833	891	3615	23711;23712;23713;23714;23715;23716;23717;23718;23719;23720	32377;32378;32379;32380;32381;32382;32383;32384	32378		453	8	
AMEGAGTDEK	1	Unmodified	1007.423	0.42297503	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	7.724	4.8042	2	1.1141E-07	4891	160511_QHF_FH_JSI12i_1	121.73	77.286			0.89998	0.95617	23.974	8	2	Median	1.3361	1.1022	NaN	1	0	Median	0.82078	0.96317	39.735	3	2	Median	1.0259	1.0026	7.7441	2	0	Median	0.7686	0.82947	11.76	2	0	Median	3410000000	1872300000	1537600000	749620000	380380000	369240000	1337100000	738790000	598360000	654240000	355750000	298490000	668960000	397410000	271540000	3834	891	3615	23721;23722;23723;23724;23725;23726;23727;23728	32385;32386;32387;32388;32389;32390;32391;32392;32393;32394;32395	32387			11	
AMEGIFIKPSVEPSAGHDEL	1	Unmodified	2126.0354	0.035405813	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							2	2	3	4	73.818	73.123	2;3	8.9688E-19	63546	160511_QHF_FH_JSI12i_3	160.67	144.36			1.105	1.0798	16.742	10	2	Median	1.2199	1.0337	11.39	2	0	Median	1.017	1.2195	12.13	2	0	Median	1.1106	1.0731	28.078	3	2	Median	0.971	1.0828	2.6107	3	0	Plateau	1928700000	911650000	1017100000	208790000	90020000	118770000	293790000	143230000	150560000	653070000	285320000	367750000	773080000	393090000	379990000	3835	4862	3616	23729;23730;23731;23732;23733;23734;23735;23736;23737;23738;23739	32396;32397;32398;32399;32400;32401;32402;32403;32404;32405;32406;32407;32408;32409;32410;32411;32412;32413;32414;32415;32416	32413			21	
AMEGIFIKPSVEPSAGHDEL	1	Oxidation (M)	2142.0303	0.030320436	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	64.675	64.53	3	8.9866E-05	55680	160511_QHF_FH_JSI12i_3	64.723	60.106			0.64521	0.63361	29.44	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54632	0.51453	NaN	1	1	Median	0.762	0.78025	NaN	1	0	Median	289830000	176740000	113090000	0	0	0	0	0	0	109700000	71190000	38511000	180130000	105550000	74580000	3836	4862	3616	23740;23741	32417;32418	32418		2545	2	
AMEGIFMK	1	Unmodified	925.44015	0.44014542	4273	Q99470	SDF2	Stromal cell-derived factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	52.878	51.757	2	0.0025791	44704	160511_QHF_FH_JSI11i_2	77.282	47.476			1.4186	1.671	20.707	3	3	Plateau	1.4186	1.1824	NaN	1	1	Median	1.4572	1.7878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3247	1.4832	NaN	1	1	Median	210290000	87251000	123040000	63170000	25670000	37500000	76934000	31146000	45788000	0	0	0	70182000	30435000	39748000	3837	4273	3617	23742;23743;23744;23745	32419;32420;32421;32422	32421			4	
AMELLKVSK	2	Acetyl (K)	1059.5998	0.59981719	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			2	1		65.999	55.187	2	0.0045303	30797	160513_QHF_FH_JSI11Kac_4	75.378	56.603			0.68502	0.82334	36.176	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74108	0.88815	10.716	2	0	Median	0.48374	0.48129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57367000	36906000	20462000	0	0	0	36540000	23212000	13327000	20828000	13693000	7134300	0	0	0	3838	5604	3618	23746;23747;23748	32423	32423	3496		1	
AMELSFALVNGNNIR	0	Unmodified	1647.8403	0.84027524	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	85.56	84.749	3	0.00027676	73283	160511_QHF_FH_JSI12i_2	40.315	35.021			1.0231	1.0648	24.219	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2966	1.2636	NaN	1	1	Median	0.80726	0.89717	NaN	1	1	Median	16168000	8034400	8133900	0	0	0	0	0	0	7395900	3772100	3623800	8772500	4262400	4510100	3839	369	3619	23749;23750;23751	32424;32425;32426	32425			3	
AMEMTWNNMEK	1	Unmodified	1383.5621	0.56212782	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	53.494	52.512	2	2.6286E-05	45383	160511_QHF_FH_JSI11i_2	101.66	97.135			1.0767	1.0694	16.471	3	0	Plateau	1.2613	1.0694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0485	1.0267	NaN	1	0	Median	1.2211	1.3907	NaN	1	0	Median	158590000	68622000	89970000	40889000	15530000	25359000	0	0	0	64802000	34439000	30363000	52901000	18653000	34248000	3840	1117	3620	23752;23753;23754	32427;32428;32429;32430;32431	32431			4	
AMENIGELK	1	Unmodified	1003.5008	0.50083142	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4	5.02	2	2					1				2	3		37.06	36.554	2	0.015868	32818	160511_QHF_FH_JSI11i_1	54.066	35.742			1.0014	0.92564	20.231	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.98116	1.1799	19.854	2	1	Median	1.1004	1.0799	27.48	2	1	Median	NaN	NaN	NaN	0	0	Median	391230000	211230000	180000000	0	0	0	180240000	104290000	75958000	210980000	106940000	104040000	0	0	0	3841	3216	3621	23755;23756;23757;23758;23759	32432;32433;32434;32435	32432			3	
AMENIGELKK	2	Unmodified	1131.5958	0.59579444	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	27.7	27.677	3	2.096E-05	23285	160511_QHF_FH_JSI12i_3	86.114	70.524			0.96344	0.95496	3.2659	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96689	0.93316	NaN	1	0	Median	0.96	0.97727	NaN	1	0	Median	588210000	271440000	316770000	0	0	0	0	0	0	174800000	82644000	92160000	413400000	188800000	224610000	3842	3216	3622	23760;23761	32436;32437;32438	32438			2	
AMESHKDEFTIIPVLVGALSESK	2	Unmodified	2500.2883	0.28832604	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.41	101.41	4	3.5745E-06	90468	160511_QHF_FH_JSI11i_3	64.028	52.072			1.0072	0.92683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0072	0.92683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	137660000	61111000	76544000	0	0	0	0	0	0	137660000	61111000	76544000	0	0	0	3843	5556	3623	23762	32439	32439			1	
AMESTATAAVAAELVSADK	1	Acetyl (Protein N-term)	1876.9088	0.90880832	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.3	101.19	2	5.2791E-84	91888	160511_QHF_FH_JSI11i_1	119.87	105.96			1.0973	1.0398	51.23	4	1	Median	1.2274	0.9879	NaN	1	0	Median	0.3297	0.38602	NaN	1	1	Median	1.1234	1.0944	NaN	1	0	Median	1.0718	1.1287	NaN	1	0	Median	919030000	506220000	412810000	260770000	121260000	139510000	170630000	149590000	21043000	261330000	127050000	134280000	226290000	108320000	117980000	3844	1649	3624	23763;23764;23765;23766	32440;32441;32442;32443;32444	32440			5	
AMESTATAAVAAELVSADKIEDVPAPSTSADK	2	Acetyl (Protein N-term)	3187.5442	0.54421896	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	101.44	101.36	3	2.5393E-69	92110	160511_QHF_FH_JSI10i_1	230.44	220.47			0.48456	0.49975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48456	0.49975	NaN	1	1	Median	206960000	194070000	12891000	0	0	0	126550000	126550000	0	0	0	0	80404000	67513000	12891000	3845	1649	3625	23767;23768	32445;32446	32446			2	
AMESTESR	0	Unmodified	909.3862	0.38619559	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.1592	4.9305	2	0.0069882	2833	160511_QHF_FH_JSI12i_1	60.895	50.481			0.91769	1.0223	2.9634	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87017	1.0138	NaN	1	0	Median	1.057	1.0292	NaN	1	0	Median	0.91769	0.97199	NaN	1	0	Median	1014400000	520070000	494330000	0	0	0	379940000	206460000	173480000	384660000	185910000	198750000	249810000	127700000	122100000	3846	1857	3626	23769;23770;23771	32447;32448;32449	32448			2	
AMEVDERPTEQYSDIGGLDK	1	Oxidation (M)	2268.0216	0.021606243	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.421	46.922	3	6.211E-05	42356	160511_QHF_FH_JSI11i_1	67.928	51.622			0.8248	0.90805	8.5755	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76765	0.90805	NaN	1	0	Median	0.8248	0.80478	NaN	1	0	Median	0.92819	0.94996	NaN	1	0	Median	185300000	97048000	88249000	0	0	0	73789000	44229000	29561000	53567000	24798000	28768000	57941000	28021000	29920000	3847	1131	3627	23772;23773;23774	32450;32451;32452;32453	32450		755	4	
AMEVDERPTEQYSDIGGLDK	1	Unmodified	2252.0267	0.026691621	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	4.5	9								1	2	3	3	2	56.527	54.865	2;3	3.4806E-25	49510	160511_QHF_FH_JSI10i_1	175.73	165.98			0.98812	0.89609	14.606	9	2	Median	1.0793	0.87432	3.4779	2	1	Median	0.79882	0.94825	13.782	2	0	Median	0.99064	0.93597	20.844	3	1	Median	0.86915	0.9061	21.358	2	0	Median	2542800000	1472000000	1070800000	318720000	156620000	162100000	725500000	439320000	286170000	805920000	517500000	288410000	692700000	358540000	334150000	3848	1131	3627	23775;23776;23777;23778;23779;23780;23781;23782;23783;23784	32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464;32465;32466;32467;32468;32469;32470;32471;32472	32465			19	
AMEWITAK	1	Unmodified	948.47389	0.47388839	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.185	47.204	2	0.00093466	40405	160511_QHF_FH_JSI11i_2	96.253	81.84			0.90908	0.94482	5.0168	4	0	Median	1.0171	0.87652	NaN	1	0	Median	0.75624	0.9267	NaN	1	0	Median	0.94599	0.9633	NaN	1	0	Median	0.8736	0.98213	NaN	1	0	Median	1258100000	641020000	617100000	182330000	87977000	94356000	271800000	147400000	124400000	461130000	230660000	230470000	342870000	174990000	167880000	3849	2176	3628	23785;23786;23787;23788	32473;32474;32475;32476;32477;32478;32479	32477			7	
AMFANQLDAR	0	Unmodified	1135.5444	0.54442757	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	41.435	40.86	2	0.0010847	35132	160511_QHF_FH_JSI11i_2	67.993	58.779			0.99031	0.94933	13.553	3	1	Median	0.99031	0.83307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0803	1.0924	NaN	1	0	Median	0.95159	0.94933	NaN	1	0	Median	111020000	58705000	52316000	23160000	13061000	10099000	0	0	0	34223000	17248000	16975000	53638000	28396000	25241000	3850	5034	3629	23789;23790;23791;23792;23793;23794;23795	32480;32481;32482;32483;32484;32485;32486	32484			7	
AMFDSDFK	1	Unmodified	959.40587	0.4058684	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	45.524	44.581	2	0.019076	38286	160511_QHF_FH_JSI11i_2	47.082	36.668			1.0205	1.0656	14.495	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1741	1.1806	NaN	1	0	Median	0.88697	0.96179	NaN	1	1	Median	164820000	86875000	77950000	0	0	0	0	0	0	108490000	60916000	47574000	56335000	25959000	30376000	3851	2909	3630	23796;23797	32487;32488	32488			2	
AMFEQMR	0	Acetyl (Protein N-term)	953.40991	0.40990792	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	62.711	62.107	1;2	2.4184E-07	56248	160511_QHF_FH_JSI11i_1	160.91	139.76			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3852	5247	3631	23798;23799;23800;23801;23802;23803	32489;32490;32491;32492;32493;32494;32495;32496;32497;32498	32491			10	
AMFIFLSNAGAER	0	Oxidation (M)	1441.7024	0.70238478	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	75.727	66.71	2	3.401E-05	34999	160513_QHF_FH_JSI12Kac_6	92.866	76.642			0.8707	0.80624	19.227	2	1	Median	0.83818	0.70375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90449	0.92365	NaN	1	0	Median	36341000	18897000	17444000	16863000	9445400	7417400	0	0	0	0	0	0	19478000	9451200	10027000	3853	185	3632	23804;23805;23806;23807;23808;23809	32499;32500;32501;32502;32503;32504	32503		75	6	
AMFIFLSNAGAER	0	Unmodified	1425.7075	0.70747015	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	83.268	73.825	2	3.7889E-05	39301	160513_QHF_FH_JSI12Kac_6	94.297	81.72			1.0331	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0331	1.1133	NaN	1	0	Median	57420000	29439000	27981000	0	0	0	0	0	0	0	0	0	57420000	29439000	27981000	3854	185	3632	23810	32505;32506	32506			2	
AMFINYEQVNMGDR	0	Unmodified	1686.7494	0.74941132	5328	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	68.639	67.97	2	8.2284E-13	58964	160511_QHF_FH_JSI12i_3	121.29	106.03			1.1312	1.2583	31.026	7	5	Median	0.78647	0.69374	NaN	1	0	Median	1.2177	1.5017	9.8717	2	2	Median	1.2515	1.2181	31.61	2	2	Median	1.019	1.0695	22.993	2	1	Median	184890000	72294000	112600000	27582000	12599000	14984000	56902000	20990000	35912000	52480000	20036000	32445000	47928000	18670000	29258000	3855	5328	3633	23811;23812;23813;23814;23815;23816;23817;23818;23819	32507;32508;32509;32510;32511;32512;32513;32514;32515;32516;32517	32517			11	
AMFLVAK	1	Unmodified	778.44113	0.4411317	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0			By MS/MS		9.5	6.5			1						1			2		47.124	47.124	2	0.03491	25778	160513_QHF_FH_JSI11Kac_6	54.765	37.838			2.1017	2.0057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1017	2.0057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55900000	16845000	39055000	0	0	0	0	0	0	55900000	16845000	39055000	0	0	0	3856	5352	3634	23820;23821	32518;32519	32519			2	
AMGAAQVVVTDLSATR	0	Unmodified	1588.8243	0.82429083	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.51	1	8	2				1	1		2	4	4	3	71.187	69.371	2;3	3.0328E-69	60255	160511_QHF_FH_JSI12i_3	207.47	171.52			0.92127	1.0475	14.717	10	0	Median	1.2907	1.1283	0.050705	2	0	Median	0.85664	1.0475	2.0596	2	0	Median	0.90531	0.90274	17.757	4	0	Median	0.95752	1.0571	6.493	2	0	Median	975940000	474630000	501320000	183950000	72843000	111100000	330200000	161870000	168320000	279810000	145830000	133980000	181990000	94080000	87910000	3857	2160	3635	23822;23823;23824;23825;23826;23827;23828;23829;23830;23831;23832;23833;23834	32520;32521;32522;32523;32524;32525;32526;32527;32528;32529;32530;32531;32532;32533;32534;32535;32536	32536			14	
AMGDAEIK	1	Unmodified	833.3953	0.39530372	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.835	15.366	2	0.0049375	13019	160511_QHF_FH_JSI12i_1	67.169	43.197			0.83306	0.93505	13.794	4	0	Median	1.272	1.0292	NaN	1	0	Median	0.77232	0.9138	NaN	1	0	Median	0.76732	0.74595	NaN	1	0	Median	0.89858	0.95679	NaN	1	0	Median	1697200000	864610000	832600000	400820000	171940000	228870000	494230000	254030000	240200000	380130000	201190000	178940000	422030000	237450000	184590000	3858	1438	3636	23835;23836;23837;23838	32537;32538;32539;32540;32541	32538			5	
AMGEHLAQYWK	1	Unmodified	1332.6285	0.62849155	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	45.135	44.896	2	9.6254E-05	38345	160511_QHF_FH_JSI12i_3	93.649	79.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3859	5753	3637	23839	32542	32542			1	
AMGEHLAQYWK	1	Oxidation (M)	1348.6234	0.62340617	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			42.47	33.852	3	0.0036222	18812	160513_QHF_FH_JSI10Kac_6	54.259	46.715			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3860	5753	3637	23840	32543	32543		2741	1	
AMGEQLLPGK	1	Unmodified	1042.5481	0.54811597	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1.5	0.5	2	2								1		1	2	43.605	42.747	2	0.0056176	38887	160511_QHF_FH_JSI12i_1	53.756	37.554			1.3539	1.3053	23.232	4	2	Median	1.6141	1.3603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3281	1.2524	NaN	1	0	Median	1.0754	1.1685	38.243	2	1	Median	97723000	41065000	56658000	22325000	8616100	13709000	0	0	0	23606000	9218300	14388000	51792000	23230000	28561000	3861	2555	3638	23841;23842;23843;23844	32544;32545;32546	32545			3	
AMGEQLLPGKK	2	Acetyl (K)	1212.6536	0.65364367	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		59.721	49.031	2	0.00012841	27005	160513_QHF_FH_JSI10Kac_4	98.249	77.347			6.8738	8.0414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.8738	8.0414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3055600	431750	2623800	0	0	0	3055600	431750	2623800	0	0	0	0	0	0	3862	2555	3639	23845;23846	32547;32548	32547	2535		2	
AMGGAVPFK	1	Unmodified	876.45276	0.45275902	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		36.234	36.234	2	0.011105	31690	160511_QHF_FH_JSI11i_3	49.358	21.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3863	2083	3640	23847	32549	32549			1	
AMGIMNSFVNDIFER	0	Oxidation (M)	1758.8069	0.8069262	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			6						2	3	4		1	96.6	95.901	2	2.1251E-10	83316	160511_QHF_FH_JSI10i_3	154.07	137.53			1.2661	1.1468	12.92	5	0	Median	1.2661	1.0391	6.9715	3	0	Plateau	1.1032	1.2897	16.608	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143350000	70768000	72579000	82263000	40930000	41333000	61084000	29838000	31246000	0	0	0	0	0	0	3864	1235;1902;2915	3641	23848;23849;23850;23851;23852;23853;23854;23855	32550;32551;32552;32553;32554;32555;32556	32551		867;868	7	
AMGIMNSFVNDIFER	0	Unmodified	1742.812	0.81201158	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	1	3	3	1	98.267	94.705	2	5.216E-118	82381	160511_QHF_FH_JSI9i_3	281.26	268.68			1.1788	1.197	23.332	7	1	Median	1.4847	1.18	NaN	1	0	Median	1.1788	1.3476	8.0576	3	0	Median	0.8972	0.85001	14.676	2	1	Median	1.3728	1.4625	NaN	1	0	Median	1541700000	720150000	821530000	169710000	68333000	101370000	940450000	432710000	507740000	391190000	197930000	193260000	40343000	21179000	19164000	3865	1235;1902;2915	3641	23856;23857;23858;23859;23860;23861;23862;23863	32557;32558;32559;32560;32561;32562;32563;32564;32565	32560			9	
AMGIMNSFVNDIFER	0	2 Oxidation (M)	1774.8018	0.80184082	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	2	0	By MS/MS	By matching			3	0			3							2	1			84.635	83.398	2	0.0015852	68581	160511_QHF_FH_JSI9i_3	116.54	83.592			1.4816	1.2725	8.0954	3	1	Median	1.6009	1.3012	11.303	2	1	Median	1.1038	1.2725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69756000	28543000	41213000	55226000	21101000	34125000	14530000	7441900	7088000	0	0	0	0	0	0	3866	1235;1902;2915	3641	23864;23865;23866	32566;32567	32567		867;868	2	
AMGMTNLPAVGR	0	Unmodified	1216.6056	0.60564762	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.165	52.607	2	0.0037197	44016	160511_QHF_FH_JSI10i_3	64.654	41.13			0.65303	0.76864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65303	0.76864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16143000	10396000	5746700	0	0	0	16143000	10396000	5746700	0	0	0	0	0	0	3867	167	3642	23867	32568	32568			1	
AMGNLQIDFADPSRADDAR	0	Unmodified	2061.9538	0.95380145	818	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	65.62	65.474	3	5.5195E-05	58280	160511_QHF_FH_JSI11i_3	68.525	60.031			1.2241	1.1608	14.41	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.426	1.2853	NaN	1	0	Median	1.0507	1.0484	NaN	1	0	Median	101170000	43843000	57323000	0	0	0	0	0	0	47550000	20314000	27236000	53616000	23528000	30087000	3868	818	3643	23868;23869	32569;32570	32569			2	
AMGPLVLTEVLFNEK	1	Unmodified	1659.8906	0.89057948	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	5	3	2	102.21	102.13	2;3	1.913E-183	84704	160511_QHF_FH_JSI10i_3	312.64	289.32			0.98929	1.0282	6.7278	13	2	Median	1.2586	1.0282	14.09	3	0	Median	0.86866	1.0294	2.994	5	2	Median	1.0901	1.0535	7.0583	3	0	Median	0.99319	1.0084	0.86729	2	0	Median	3670700000	1841800000	1829000000	230330000	100340000	129990000	584650000	327970000	256690000	861660000	409240000	452420000	1994100000	1004200000	989870000	3869	1839	3644	23870;23871;23872;23873;23874;23875;23876;23877;23878;23879;23880;23881;23882	32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587	32575			17	
AMGQGLPDEEQEK	1	Unmodified	1430.6348	0.63475872	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			28.166	27.847	2	0.00057562	24804	160511_QHF_FH_JSI10i_1	87.568	68.788			1.1419	1.3603	17.843	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1419	1.3603	17.843	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136350000	66021000	70327000	0	0	0	136350000	66021000	70327000	0	0	0	0	0	0	3870	5639	3645	23883;23884;23885	32588;32589;32590	32589			3	
AMGTLLNTAISEVIGK	1	Unmodified	1616.8807	0.88074307	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			101.7	101.54	2	1.5547E-80	82454	160511_QHF_FH_JSI9i_3	302.87	288			1.0195	0.98638	18.817	2	0	Median	1.0814	0.8635	NaN	1	0	Median	0.9612	1.1268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	345890000	174120000	171770000	157500000	78216000	79285000	188390000	95900000	92487000	0	0	0	0	0	0	3871	316	3646	23886;23887	32591;32592;32593;32594	32594			4	
AMGVVVATGVNTEIGK	1	Unmodified	1544.8232	0.82322819	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.742	5	6	3							2	3	5	4	61.958	61.184	2	4.9585E-17	55616	160511_QHF_FH_JSI11i_1	126.12	91.231			0.92166	1.0147	34.625	10	7	Median	1.0748	0.93031	21.546	2	1	Median	0.88259	1.0795	18.699	3	2	Median	0.9015	0.886	16.264	2	2	Median	0.9029	1.0359	65.76	3	2	Median	346670000	160190000	186480000	41115000	15428000	25686000	123940000	51806000	72131000	96662000	45817000	50844000	84956000	47137000	37818000	3872	1103	3647	23888;23889;23890;23891;23892;23893;23894;23895;23896;23897;23898;23899;23900;23901	32595;32596;32597;32598;32599;32600;32601;32602;32603;32604;32605;32606;32607;32608;32609;32610;32611;32612;32613	32596			19	
AMGYQPLVTMDDAMER	0	Unmodified	1826.8001	0.80012626	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								3	3	5	3	75.55	74.959	2;3	1.3852E-30	68138	160511_QHF_FH_JSI11i_1	195.25	185.82			1.1727	1.1351	11.203	14	4	Median	1.3318	1.1458	20.071	3	1	Median	0.92835	1.0827	0.77317	3	0	Plateau	1.1815	1.1672	7.2643	5	3	Median	1.0574	1.1148	12.955	3	0	Plateau	897280000	433390000	463890000	153170000	65821000	87351000	218140000	109580000	108560000	407310000	201630000	205680000	118660000	56361000	62298000	3873	2701	3648	23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915	32614;32615;32616;32617;32618;32619;32620;32621;32622;32623;32624;32625;32626;32627;32628;32629;32630;32631;32632;32633	32615			20	
AMHGELQK	1	Oxidation (M)	928.44365	0.44365089	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	3	0			5							1		2	2	5.5052	5.4434	2;3	0.016404	4272	160511_QHF_FH_JSI12i_3	77.282	59.297			1.214	1.1695	49.094	5	2	Median	1.6461	1.3871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3821	1.3174	17.945	2	1	Median	0.70147	0.72079	68.446	2	1	Median	629370000	292800000	336570000	34488000	12288000	22201000	0	0	0	210340000	96998000	113340000	384540000	183520000	201030000	3874	2094	3649	23916;23917;23918;23919;23920	32634;32635;32636	32636		1757	3	
AMHGELQK	1	Unmodified	912.44874	0.44873627	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.65		8	5						2	3	3	5	4	7.423	6.094	2;3	0.00066294	5044	160511_QHF_FH_JSI10i_2	69.598	31.36			0.95863	0.9599	28.343	15	2	Median	1.3946	1.1485	37.473	3	1	Median	0.6787	0.84721	9.4843	3	0	Plateau	1.0141	1.0398	38.858	5	1	Median	0.88833	0.94785	9.7413	4	0	Median	6594000000	3016600000	3577300000	675010000	260350000	414670000	1138200000	588940000	549280000	2595900000	1304000000	1291900000	2184800000	863370000	1321500000	3875	2094	3649	23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934;23935	32637;32638;32639;32640;32641;32642;32643;32644;32645;32646;32647;32648;32649;32650;32651;32652;32653;32654;32655;32656;32657;32658	32652			22	
AMHQAQTMEGCSSPMVVK	1	Unmodified	1990.8733	0.87330798	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	3	1	33.815	33.442	3	3.1964E-09	28579	160511_QHF_FH_JSI11i_2	130.39	113.31			0.97838	0.91886	59.3	5	3	Median	NaN	NaN	NaN	0	0	Median	0.73794	0.9178	NaN	1	1	Median	0.97838	0.91886	82.179	3	2	Median	1.2048	1.195	NaN	1	0	Median	429860000	192000000	237860000	0	0	0	48491000	23817000	24673000	228340000	108560000	119780000	153030000	59627000	93401000	3876	3897	3650	23936;23937;23938;23939;23940	32659;32660;32661;32662;32663	32662			5	
AMHQAQTMEGCSSPMVVK	1	Oxidation (M)	2006.8682	0.8682226	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	33.349	33.255	3	0.0001171	23514	160511_QHF_FH_JSI11i_3	64.454	55.191			1.0528	1.0788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0528	1.0788	NaN	1	1	Median	15543000	6249800	9293400	0	0	0	0	0	0	0	0	0	15543000	6249800	9293400	3877	3897	3650	23941;23942	32664;32665	32664		2331;2332;2333	2	
AMHQAQTMEGCSSPMVVK	1	2 Oxidation (M)	2022.8631	0.86313723	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	2	0			By MS/MS	By MS/MS	3	0			2									1	1	33.252	33.159	3	0.00068647	29052	160511_QHF_FH_JSI11i_3	54.292	49.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11977000	0	11977000	0	0	0	0	0	0	0	0	0	11977000	0	11977000	3878	3897	3650	23943;23944	32666;32667	32666		2331;2332;2333	2	
AMIAAAAR	0	Unmodified	773.42179	0.42179324	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	16.638	16.158	2	0.0074031	12808	160511_QHF_FH_JSI12i_3	69.234	41.917			1.0043	1.102	27.864	2	2	Median	NaN	NaN	NaN	0	0	Median	1.141	1.342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.884	0.9049	NaN	1	1	Median	101400000	50516000	50887000	0	0	0	43964000	21904000	22060000	0	0	0	57439000	28612000	28827000	3879	3679	3651	23945;23946;23947	32668;32669;32670	32669			3	
AMIAGLALLR	0	Unmodified	1027.6212	0.62122133	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		82.215	74.371	2	0.00015955	41771	160513_QHF_FH_JSI10Kac_6	93.561	78.062			0.87718	1.0038	27.193	3	1	Median	0.73705	0.63849	NaN	1	0	Median	0.87718	1.0038	NaN	1	1	Median	1.0904	1.0397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	204730000	112480000	92250000	63850000	37586000	26264000	59170000	30366000	28805000	81705000	44524000	37181000	0	0	0	3880	3560	3652	23948;23949;23950	32671;32672;32673	32673			2	
AMIDSGASGNFIDHEYVAQNGIPLR	0	Unmodified	2674.2809	0.28094925	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	77.853	77.256	3	1.0678E-28	68697	160511_QHF_FH_JSI10i_2	158.02	151.22			1.2484	1.2572	9.5051	6	0	Median	1.218	1.0594	NaN	1	0	Median	1.0723	1.3515	NaN	1	0	Median	1.3296	1.2572	2.0681	2	0	Median	1.1629	1.2378	11.203	2	0	Median	241110000	109440000	131670000	37024000	14838000	22187000	40815000	20123000	20692000	78405000	35293000	43112000	84864000	39189000	45674000	3881	3307	3653	23951;23952;23953;23954;23955;23956	32674;32675;32676;32677;32678;32679;32680;32681;32682;32683;32684;32685	32682			12	
AMIENFNAK	1	Unmodified	1036.5012	0.50116577	1514	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	36.135	35.479	2	4.4117E-06	31689	160511_QHF_FH_JSI11i_1	119.41	91.92			0.88139	0.92116	20.786	10	4	Median	1.2228	1.0388	22.034	2	1	Median	0.73051	0.88189	18.559	2	0	Median	0.91847	0.9187	27.44	3	1	Plateau	0.95494	0.95459	13.172	3	2	Median	1446700000	803550000	643170000	204200000	110300000	93899000	374520000	224910000	149610000	525920000	283900000	242020000	342070000	184430000	157640000	3882	1514	3654	23957;23958;23959;23960;23961;23962;23963;23964;23965;23966;23967	32686;32687;32688;32689;32690;32691;32692;32693;32694;32695;32696;32697	32687			12	
AMIEVINHK	1	Unmodified	1053.5641	0.56410038	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	2	2	30.578	30.276	2;3	4.1099E-23	25399	160511_QHF_FH_JSI12i_3	190.08	106.47			0.73985	0.76446	40.395	5	0	Median	NaN	NaN	NaN	0	0	Median	0.50053	0.57338	NaN	1	0	Median	1.4393	1.3594	6.3767	2	0	Median	0.70502	0.72037	8.4015	2	0	Median	1172700000	600740000	571940000	0	0	0	47409000	25429000	21981000	421400000	197720000	223680000	703870000	377600000	326270000	3883	1316	3655	23968;23969;23970;23971;23972;23973;23974	32698;32699;32700;32701;32702;32703;32704;32705;32706	32705			8	
AMIEVINHK	1	Oxidation (M)	1069.559	0.559015	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	1	0			By MS/MS		3	0			2									2		30.217	30.217	3	0.00024641	26213	160511_QHF_FH_JSI11i_3	72.23	47.454			1.6293	1.529	68.819	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6293	1.529	68.819	2	1	Median	NaN	NaN	NaN	0	0	Median	51840000	19922000	31917000	0	0	0	0	0	0	51840000	19922000	31917000	0	0	0	3884	1316	3655	23975;23976	32707;32708	32707		965	2	
AMIGHTDSAEAAPGTIR	0	Unmodified	1696.8203	0.82026808	161	O00746	NME4	Nucleoside diphosphate kinase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	31.582	31.067	3	4.8635E-07	27255	160511_QHF_FH_JSI10i_2	88.427	80.043			0.66726	0.74669	24.724	4	2	Median	1.0467	0.89318	NaN	1	0	Median	0.70302	0.85477	NaN	1	1	Median	0.56534	0.52659	NaN	1	1	Median	0.63331	0.65227	NaN	1	0	Median	236070000	126060000	110010000	29862000	9782800	20079000	62579000	39613000	22966000	78962000	42643000	36319000	64666000	34023000	30643000	3885	161	3656	23977;23978;23979;23980	32709;32710;32711	32710			3	
AMINLHIQK	1	Unmodified	1066.5957	0.59573486	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.61		3	8						9	5	5	6	4	46.856	42.736	2;3	3.6594E-16	34938	160511_QHF_FH_JSI9i_3	170.06	153.91			0.9536	0.94096	14.786	18	0	Median	1.3167	1.064	16.476	5	0	Median	0.75838	0.89532	14.046	5	0	Median	0.99138	0.93842	18.715	5	0	Median	0.84569	0.87633	4.2352	3	0	Plateau	7493700000	3543500000	3950200000	1687600000	729940000	957700000	1518400000	766500000	751860000	1850300000	857270000	993000000	2437500000	1189800000	1247700000	3886	5144	3657	23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999;24000	32712;32713;32714;32715;32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726;32727;32728;32729;32730;32731;32732;32733;32734;32735;32736;32737;32738;32739;32740;32741;32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767	32740			56	
AMINLHIQK	1	Oxidation (M)	1082.5906	0.59064948	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			6						9	5	3	2	5	37.696	32.408	3	2.0617E-05	26693	160511_QHF_FH_JSI9i_3	114.89	98.118			0.37591	0.33851	211.69	11	10	Median	0.42013	0.33851	145.98	3	3	Median	0.0624	0.07178	258.51	2	2	Median	0.010232	0.0096766	NaN	1	1	Median	0.7591	0.82157	245.36	5	4	Median	14055000000	13809000000	246420000	322830000	241940000	80891000	2956600000	2915500000	41012000	2422300000	2396000000	26311000	8353700000	8255500000	98205000	3887	5144	3657	24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011;24012;24013;24014;24015	32768;32769;32770;32771;32772;32773;32774;32775;32776;32777;32778;32779;32780;32781;32782	32771		2587	15	
AMINLHIQKDNPK	2	Acetyl (K)	1562.8239	0.8238969	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.948	52.24	3	1.5121E-08	28245	160513_QHF_FH_JSI11Kac_6	111.12	103.99			0.3618	0.33165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3618	0.33165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57299000	38831000	18468000	0	0	0	0	0	0	57299000	38831000	18468000	0	0	0	3888	5144	3658	24016	32783	32783	3325		1	
AMIPGDHSSIIIDSVPEVSFSPSSK	1	Unmodified	2599.284	0.28396894	4720	Q9H4I2	ZHX3	Zinc fingers and homeoboxes protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.832	89.744	3	4.3305E-05	77849	160511_QHF_FH_JSI12i_3	51.234	44.51			0.87379	0.91313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87379	0.91313	NaN	1	0	Median	17838000	10716000	7121900	0	0	0	0	0	0	0	0	0	17838000	10716000	7121900	3889	4720	3659	24017	32784;32785	32784			2	
AMKDEEK	2	Unmodified	849.39022	0.39021834	73;2069;886	CON__Q3SX28;P07951;P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		7								2	2		3	0.36927	-0.068336	2;3	0.032494	331	160511_QHF_FH_JSI12i_2	38.776	13.853		+	0.21353	0.23942	83.028	7	3	Median	0.21865	0.19186	28.439	2	1	Median	0.21474	0.26467	0.39591	2	1	Median	NaN	NaN	NaN	0	0	Median	0.21193	0.23942	136.22	3	1	Median	272440000	205890000	66548000	76844000	60059000	16785000	75617000	58566000	17051000	0	0	0	119980000	87262000	32713000	3890	73;886;2069	3660	24018;24019;24020;24021;24022;24023;24024	32786;32787;32788;32789;32790;32791	32788			6	
AMKDEEK	2	Acetyl (K);Oxidation (M)	907.3957	0.39569765	73;2069;886	CON__Q3SX28;P07951;P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	1	0	1	1			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	5.3115	-1.9141	2	0.036017	1772	160513_QHF_FH_JSI11Kac_3	66.621	6.0315		+	0.20437	0.21183	218.85	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.045385	0.045074	NaN	1	1	Median	0.92026	0.99553	NaN	1	0	Median	8698900	7530800	1168200	0	0	0	0	0	0	6454800	6342200	112650	2244100	1188600	1055500	3891	73;886;2069	3660	24025;24026	32792;32793	32792	46		2	
AMKDEEK	2	Acetyl (K)	891.40078	0.40078303	73;2069;886	CON__Q3SX28;P07951;P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	9.5138	2.313	2	0.019882	3926	160513_QHF_FH_JSI11Kac_3	82.75	23.969		+	0.70519	0.73247	0.92526	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73746	0.72769	NaN	1	1	Median	0.67434	0.73728	NaN	1	0	Median	17604000	8654200	8949800	0	0	0	0	0	0	12713000	5728100	6985000	4890800	2926000	1964800	3892	73;886;2069	3660	24027;24028	32794;32795	32794	46		2	
AMKQVAGTMK	2	Acetyl (K)	1105.5624	0.56238582	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.866							3		1		2	1	1	35.825	26.624	2	0.00030463	16478	160513_QHF_FH_JSI11Kac_4	94.692	78.152			0.82218	0.88672	5.9308	4	0	Median	NaN	NaN	NaN	0	0	Median	0.76407	0.91477	9.486	2	0	Median	0.89887	0.8717	NaN	1	0	Median	0.82769	0.902	NaN	1	0	Median	68975000	36077000	32898000	0	0	0	21237000	11553000	9684500	37279000	17772000	19507000	10459000	6753000	3705800	3893	1263	3661	24029;24030;24031;24032	32796;32797;32798;32799;32800;32801	32799	1157		6	
AMLAIEDWQK	1	Unmodified	1203.5958	0.59579444	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	no	no	0	0	0	0			By MS/MS		2	0		1										1		66.946	66.372	2	0.0007113	57962	160511_QHF_FH_JSI11i_2	78.934	66.346			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3894	3517	3662	24033	32802	32802			1	
AMLALTSTLNK	1	Unmodified	1161.6427	0.64274463	2413	Q13438	OS9	Protein OS-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	60.813	60.217	2	3.2914E-06	51853	160511_QHF_FH_JSI12i_3	122.33	104.29			0.53543	0.625	101.74	3	2	Median	NaN	NaN	NaN	0	0	Median	0.53543	0.625	NaN	1	1	Median	0.88585	0.82384	NaN	1	0	Median	0.12311	0.12522	NaN	1	1	Median	1234500000	1122500000	111990000	0	0	0	63189000	44785000	18404000	67976000	30511000	37465000	1103300000	1047200000	56119000	3895	2413	3663	24034;24035;24036	32803;32804;32805	32805			3	
AMLDELAMETLQEK	1	Unmodified	1620.7739	0.77389474	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	88.042	87.449	2	0.00012124	76927	160511_QHF_FH_JSI9i_2	124.1	114.42			0.72399	0.72311	9.4828	5	4	Median	0.69789	0.61165	NaN	1	0	Median	0.61278	0.72311	NaN	1	1	Median	0.72503	0.71261	NaN	1	1	Median	0.73513	0.76493	4.8758	2	2	Median	85313000	51496000	33817000	18386000	9853500	8532800	16983000	10265000	6717700	18047000	10832000	7215200	31897000	20546000	11352000	3896	2841	3664	24037;24038;24039;24040;24041	32806;32807;32808;32809;32810	32808			5	
AMLDQLMGTSR	0	Unmodified	1221.5846	0.58457783	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	3	6	3							1	4	4	3	59.518	58.818	2	5.1488E-28	50945	160511_QHF_FH_JSI11i_2	166.19	140.63			1.2572	1.2307	27.645	9	3	Median	1.2654	1.0796	NaN	1	0	Median	0.9722	1.195	37.124	3	1	Plateau	1.2715	1.2022	29.599	3	1	Plateau	1.1064	1.1825	11.633	2	1	Median	2608400000	1170700000	1437800000	302670000	112690000	189980000	577650000	251640000	326020000	894360000	381890000	512470000	833750000	424440000	409310000	3897	5562	3665	24042;24043;24044;24045;24046;24047;24048;24049;24050;24051;24052;24053	32811;32812;32813;32814;32815;32816;32817;32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828;32829;32830	32825			20	
AMLDQLMGTSR	0	Oxidation (M)	1237.5795	0.57949245	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	39.353	39.255	2	0.0026266	33378	160511_QHF_FH_JSI12i_3	61.353	42.573			1.0792	1.0582	1.1785	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1082	1.0494	NaN	1	0	Median	1.051	1.067	NaN	1	0	Median	60063000	25800000	34263000	0	0	0	0	0	0	25825000	10619000	15206000	34237000	15180000	19057000	3898	5562	3665	24054;24055	32831;32832	32831		2698	2	
AMLEAQQEALEELQLESPK	1	Unmodified	2156.0671	0.067099872	4913	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			87.686	87.218	3	3.5805E-08	79187	160511_QHF_FH_JSI10i_1	103.1	90.175			0.67471	0.6594	34.518	2	1	Median	0.61459	0.51659	NaN	1	1	Median	0.74071	0.84169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33800000	22653000	11147000	9119200	6276800	2842400	24681000	16376000	8304400	0	0	0	0	0	0	3899	4913	3666	24056;24057	32833;32834;32835	32834			3	
AMLENEK	1	Unmodified	833.3953	0.39530372	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	12.322	10.029	2	0.002495	8791	160511_QHF_FH_JSI12i_1	110.63	55.192			1.0091	0.9989	23.034	9	0	Median	1.2102	0.95796	NaN	1	0	Median	0.84989	0.9989	31.961	3	0	Median	1.0643	1.0244	27.015	3	0	Median	0.86095	0.94254	26.421	2	0	Median	6325800000	3099500000	3226300000	1015600000	472150000	543420000	1733700000	986150000	747550000	2166100000	904610000	1261500000	1410400000	736560000	673830000	3900	1270	3667	24058;24059;24060;24061;24062;24063;24064;24065;24066;24067	32836;32837;32838;32839;32840;32841;32842;32843;32844;32845;32846;32847;32848;32849;32850	32840			15	
AMLESIGVPLEK	1	Unmodified	1285.6952	0.69517413	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.24	4	9	1				1	1		5	5	4	2	73.606	71.38	2;3	9.5614E-16	62024	160511_QHF_FH_JSI12i_2	180.36	161.58			0.92525	1.0025	19.239	14	5	Median	1.263	1.0647	22.938	4	3	Median	0.87742	1.0205	21.285	4	1	Median	0.92525	0.93375	5.9923	4	1	Median	0.81067	0.90655	16.783	2	0	Median	1769400000	938800000	830560000	358490000	165750000	192750000	504400000	289300000	215100000	581790000	318760000	263030000	324680000	165000000	159680000	3901	1823	3668	24068;24069;24070;24071;24072;24073;24074;24075;24076;24077;24078;24079;24080;24081;24082;24083	32851;32852;32853;32854;32855;32856;32857;32858;32859;32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870;32871;32872;32873;32874	32853			24	
AMLGQFSQAEALLMK	1	Unmodified	1636.8317	0.83168439	30	A6NJ78;P0C7V9	METTL15;METTL15P1	Probable methyltransferase-like protein 15;Putative methyltransferase-like protein 15P1	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	96.738	96.746	2	0.00048024	83785	160511_QHF_FH_JSI12i_3	91.03	65.091			1.2806	1.2729	25.117	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1304	1.0658	NaN	1	1	Median	1.4507	1.5203	NaN	1	1	Median	29990000	11117000	18872000	0	0	0	0	0	0	11986000	4725500	7260700	18004000	6391900	11612000	3902	30	3669	24084;24085	32875;32876	32876			2	
AMLHLFEK	1	Unmodified	987.52117	0.52117293	2154	Q00597	FANCC	Fanconi anemia group C protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.661	49.423	3	0.022408	42335	160511_QHF_FH_JSI12i_3	30.687	20.906			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3903	2154	3670	24086	32877	32877			1	
AMLHLQWPYK	1	Unmodified	1285.6641	0.66414878	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	2	2	4	2	71.752	66.325	3	4.7841E-08	55396	160511_QHF_FH_JSI9i_3	108.98	100.25			0.99657	0.97756	25.395	7	1	Median	1.0989	0.91375	21.032	2	0	Median	0.73154	0.8555	2.8585	2	0	Median	0.99657	0.97756	NaN	1	0	Median	1.2702	1.3418	32.282	2	1	Median	393870000	198300000	195580000	79797000	37216000	42581000	109910000	65952000	43956000	26219000	8535700	17683000	177950000	86594000	91356000	3904	859	3671	24087;24088;24089;24090;24091;24092;24093;24094;24095;24096	32878;32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889;32890;32891;32892;32893;32894;32895;32896;32897	32888			19	
AMLIEAGSPFREPLIK	1	Unmodified	1770.9702	0.97022678	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		80.72	79.374	3	0.0002421	66569	160511_QHF_FH_JSI10i_3	66.246	54.269			0.9221	0.89577	8.3196	2	0	Median	1.0334	0.8446	NaN	1	0	Median	0.82277	0.95005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72305000	32456000	39849000	39826000	17707000	22118000	32480000	14749000	17731000	0	0	0	0	0	0	3905	5618	3672	24097;24098;24099	32898;32899;32900	32899			3	
AMLNSNDVSEYLK	1	Unmodified	1482.7024	0.70244436	4034	Q96DX4	RSPRY1	RING finger and SPRY domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				66.984	65.972	2	0.00091017	58647	160511_QHF_FH_JSI9i_1	77.744	62.478			0.4485	0.36492	NaN	1	1	Median	0.4485	0.36492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13678000	10784000	2894300	13678000	10784000	2894300	0	0	0	0	0	0	0	0	0	3906	4034	3673	24100	32901	32901			1	
AMLPPNSFQGK	1	Unmodified	1188.5961	0.59612879	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.697	5	6	2							2	2	5	4	44.065	43.482	2	5.5751E-05	37546	160511_QHF_FH_JSI12i_2	102.61	81.707			1.1066	1.077	14.468	9	4	Median	1.8379	1.4555	NaN	1	0	Median	0.84471	0.98507	NaN	1	0	Median	1.1029	1.074	8.0134	4	2	Median	1.1712	1.3367	11.867	3	2	Plateau	449290000	228020000	221270000	25633000	8662400	16970000	72249000	42861000	29388000	218720000	109740000	108980000	132690000	66756000	65934000	3907	2754	3674	24101;24102;24103;24104;24105;24106;24107;24108;24109;24110;24111;24112;24113	32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915	32906			13	
AMLQVNPEER	0	Unmodified	1185.5812	0.58120701	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		37.332	36.287	2	1.2294E-05	30978	160511_QHF_FH_JSI11i_2	104.17	50.997			1.371	1.1805	NaN	1	1	Median	1.371	1.1805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11706000	5866500	5839200	11706000	5866500	5839200	0	0	0	0	0	0	0	0	0	3908	229	3675	24114;24115;24116	32916;32917;32918	32917			3	
AMLSANIR	0	Unmodified	874.46947	0.46947171	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.45		1	4					1	3	3	1	2	3	35.607	30.93	2	3.1137E-05	17099	160513_QHF_FH_JSI11Kac_6	130.77	77.211			1.0069	0.95757	16.24	9	2	Median	1.6003	1.2919	17.245	3	0	Plateau	0.92201	1.0675	NaN	1	0	Median	1.0484	1.0158	8.3478	2	0	Median	0.82038	0.83045	12.292	3	2	Median	5292400000	2467000000	2825400000	864890000	310660000	554230000	1054400000	499560000	554870000	1502800000	729800000	772970000	1870300000	926960000	943350000	3909	2155	3676	24117;24118;24119;24120;24121;24122;24123;24124;24125	32919;32920;32921;32922;32923;32924;32925;32926;32927;32928	32922			10	
AMLSGPGQFAENETNEVNFR	0	Oxidation (M)	2226.0011	0.0011455721	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	65.207	64.832	2	2.0956E-67	57636	160511_QHF_FH_JSI11i_3	230.16	206.09			1.0725	1.0267	5.6787	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1654	1.0688	NaN	1	0	Median	0.98704	0.98631	NaN	1	0	Median	103820000	45969000	57855000	0	0	0	14103000	0	14103000	47111000	27381000	19730000	42609000	18588000	24022000	3910	2658	3677	24126;24127;24128;24129	32929;32930;32931;32932;32933;32934	32929		2084	6	
AMLSGPGQFAENETNEVNFR	0	Unmodified	2210.0062	0.00623095	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.768	5	8	7							3	6	6	5	71.81	71.119	2;3	0	63571	160511_QHF_FH_JSI11i_3	447.01	423.89			1.0586	1.1217	6.631	20	2	Median	1.2802	1.1012	3.099	3	1	Plateau	0.97531	1.1376	6.5738	6	0	Median	1.1276	1.0886	6.8677	6	0	Median	1.0106	1.0978	7.5257	5	1	Median	3903100000	1836700000	2066500000	865850000	371280000	494570000	819610000	408030000	411580000	1383400000	664920000	718490000	834270000	392430000	441840000	3911	2658	3677	24130;24131;24132;24133;24134;24135;24136;24137;24138;24139;24140;24141;24142;24143;24144;24145;24146;24147;24148;24149	32935;32936;32937;32938;32939;32940;32941;32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962;32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974;32975;32976	32936			42	
AMLSTGFK	1	Unmodified	853.43677	0.4367746	1372;1296	P31327;P27708	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.48		4	5					3	4	4	4	5	3	40.439	35.778	2	0.0011819	19528	160513_QHF_FH_JSI11Kac_6	101.64	70.354			0.98362	1.0469	33.362	16	1	Median	1.2954	1.0625	20.176	4	0	Median	0.84585	1.0164	9.574	4	0	Median	1.0181	0.99479	59.822	5	1	Median	0.94569	1.0154	8.918	3	0	Plateau	6399700000	3145600000	3254100000	1092700000	496730000	595980000	1125300000	621470000	503880000	2217700000	1027400000	1190200000	1964000000	1000000000	964020000	3912	1372;1296	3678	24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165	32977;32978;32979;32980;32981;32982;32983;32984;32985;32986;32987;32988;32989;32990;32991;32992;32993;32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004	32986			28	
AMLSTGFK	1	Oxidation (M)	869.43169	0.43168922	1372;1296	P31327;P27708	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	no	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	25.737	24.846	2	0.0083811	20573	160511_QHF_FH_JSI12i_3	65.252	47.217			1.106	1.1473	4.3441	3	0	Plateau	1.3633	1.0835	NaN	1	0	Median	0.90403	1.0536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.106	1.1473	NaN	1	0	Median	204030000	99935000	104100000	51359000	24474000	26885000	37941000	21499000	16442000	0	0	0	114730000	53962000	60771000	3913	1372;1296	3678	24166;24167;24168	33005	33005		935	1	
AMLSYVWPK	1	Unmodified	1093.563	0.56303775	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	2	2	2	3	71.714	69.898	2	3.7951E-06	60683	160511_QHF_FH_JSI12i_3	121.62	95.017			1.0319	1.0791	26.796	8	2	Median	0.8905	0.7412	53.305	2	1	Median	0.88736	1.056	4.0393	2	0	Median	1.0639	1.0451	4.3288	2	0	Median	1.0633	1.1266	2.5677	2	1	Median	488020000	240780000	247240000	63558000	32080000	31478000	90928000	50100000	40828000	124330000	54722000	69607000	209210000	103880000	105320000	3914	464	3679	24169;24170;24171;24172;24173;24174;24175;24176;24177	33006;33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017	33016			11	
AMLVFAEHR	0	Unmodified	1072.5488	0.54878467	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	4	4	4	5	44.942	40.186	2;3	3.5252E-17	22226	160513_QHF_FH_JSI10Kac_6	144.12	136.2			1.1454	1.057	16.556	15	0	Median	1.3191	1.0935	16.728	4	0	Median	0.79031	0.91872	17.56	4	0	Median	1.1963	1.1593	8.8333	4	0	Median	1.0497	1.077	8.6784	3	0	Median	1182900000	564180000	618710000	359780000	169230000	190550000	297260000	179540000	117720000	283090000	120760000	162330000	242760000	94646000	148110000	3915	1548	3680	24178;24179;24180;24181;24182;24183;24184;24185;24186;24187;24188;24189;24190;24191;24192;24193;24194	33018;33019;33020;33021;33022;33023;33024;33025;33026;33027;33028;33029;33030;33031;33032;33033;33034;33035;33036;33037;33038	33035			21	
AMLWLSEK	1	Unmodified	976.50519	0.50518852	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	61.783	61.022	2	0.00032001	52487	160511_QHF_FH_JSI12i_2	112.17	87.248			0.76906	0.77995	9.4856	6	1	Median	0.82926	0.70358	NaN	1	0	Median	0.72162	0.81021	NaN	1	1	Median	0.82715	0.8149	0.57748	2	0	Median	0.65133	0.69756	10.404	2	0	Median	1238300000	724850000	513450000	140020000	71738000	68277000	102140000	62915000	39221000	487340000	288530000	198810000	508810000	301660000	207150000	3916	1129	3681	24195;24196;24197;24198;24199;24200	33039;33040;33041;33042;33043;33044;33045;33046	33040			8	
AMMSQSGHEYDPINYMK	1	Unmodified	2000.8431	0.84305371	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	57.599	56.662	3	0.0014714	49163	160511_QHF_FH_JSI11i_2	46.514	41.512			1.1227	1.1653	7.8722	4	0	Median	1.3705	1.2193	NaN	1	0	Median	0.83586	1.0171	NaN	1	0	Median	1.1881	1.1735	NaN	1	0	Median	1.0608	1.1571	NaN	1	0	Median	174150000	88971000	85176000	36558000	21734000	14824000	36070000	19342000	16728000	64099000	25027000	39071000	37420000	22868000	14552000	3917	3285	3682	24201;24202;24203;24204	33047	33047			1	
AMMYSGELK	1	Unmodified	1028.4671	0.46708845	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	36.736	36.257	2	0.013758	32366	160511_QHF_FH_JSI10i_1	75.738	57.703			1.0958	1.2327	6.3326	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0905	1.2891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1012	1.1787	NaN	1	0	Median	299650000	166850000	132790000	0	0	0	192020000	117330000	74689000	0	0	0	107630000	49522000	58105000	3918	1015	3683	24205;24206	33048;33049	33049			0	
AMNGESLDGR	0	Unmodified	1048.4608	0.46075752	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	17.078	15.169	2	6.9396E-11	13108	160511_QHF_FH_JSI12i_1	144.65	103.08			0.93986	0.92908	9.9134	5	0	Median	1.3619	1.1022	NaN	1	0	Median	0.70892	0.84022	NaN	1	0	Median	0.94852	0.92502	2.7132	2	0	Median	0.89385	0.92908	NaN	1	0	Median	1859700000	961530000	898200000	399720000	188730000	211000000	480730000	263540000	217180000	496790000	258250000	238540000	482490000	251020000	231470000	3919	2141	3684	24207;24208;24209;24210;24211	33050;33051;33052;33053;33054;33055;33056	33052			6	
AMNIVVPFMFK	1	Unmodified	1295.677	0.67702165	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	3	2	3	2	97.189	93.733	2	1.6898E-09	83828	160511_QHF_FH_JSI10i_3	133.23	119.03			1.2555	1.1757	39.77	7	3	Median	1.6543	1.3867	40.499	2	1	Median	1.4853	1.7331	76.682	2	1	Median	1.2273	1.1839	0.98582	2	1	Median	1.0865	1.1124	NaN	1	0	Median	891840000	429690000	462150000	121510000	49413000	72095000	219580000	114390000	105180000	249690000	111910000	137780000	301060000	153970000	147090000	3920	464	3685	24212;24213;24214;24215;24216;24217;24218;24219;24220;24221	33057;33058;33059;33060;33061;33062;33063;33064;33065;33066;33067;33068;33069	33059			13	
AMNKFGEALK	2	Acetyl (K)	1149.5852	0.58522975	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		60.248	49.214	2	0.010321	28062	160513_QHF_FH_JSI11Kac_4	67.563	47.233			0.18743	0.18651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18743	0.18651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3392000	3100200	291800	0	0	0	0	0	0	3392000	3100200	291800	0	0	0	3921	4518	3686	24222	33070	33070	3174		1	
AMNQPLNHMNLHPAVSSTPVPQR	0	Unmodified	2538.2584	0.25838009	4611	Q9GZV5	WWTR1	WW domain-containing transcription regulator protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			53.817	52.26	4	7.6767E-05	43672	160511_QHF_FH_JSI10i_3	52.509	48.438			0.90077	1.0257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90077	1.0257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41102000	22762000	18341000	0	0	0	41102000	22762000	18341000	0	0	0	0	0	0	3922	4611	3687	24223	33071	33071			1	
AMNQQTTLDTPQLER	0	Unmodified	1744.8414	0.84139745	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.688	45.015	2	7.5416E-52	40640	160511_QHF_FH_JSI11i_1	218.01	174.5			1.2548	1.2235	39.581	4	2	Median	1.1787	1.0005	NaN	1	0	Median	1.0156	1.1664	NaN	1	1	Median	1.3359	1.2834	NaN	1	0	Median	2.417	2.4577	NaN	1	1	Median	116150000	48067000	68084000	29297000	13869000	15428000	26765000	15079000	11687000	35593000	13793000	21799000	24496000	5326100	19170000	3923	641	3688	24224;24225;24226;24227	33072;33073;33074;33075;33076;33077	33073			6	
AMNTQENATR	0	Unmodified	1134.5088	0.50877035	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.6537	6.3193	2	6.0977E-05	4033	160511_QHF_FH_JSI11i_1	90.906	74.703			0.90573	0.94918	9.0465	4	0	Median	1.1644	0.9472	NaN	1	0	Median	0.83479	0.9744	NaN	1	0	Median	0.98271	0.95116	NaN	1	0	Median	0.78343	0.80042	NaN	1	0	Median	190360000	98828000	91530000	35345000	19396000	15949000	47893000	25073000	22820000	52181000	22192000	29989000	54940000	32168000	22772000	3924	4880	3689	24228;24229;24230;24231	33078;33079;33080;33081;33082;33083;33084	33078			7	
AMNVLTEAEER	0	Unmodified	1261.5973	0.597251	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	44.113	43.293	2	2.8258E-09	36988	160511_QHF_FH_JSI12i_2	127.76	109.95			0.81983	1.0538	22.058	7	3	Plateau	0.95713	0.82318	47.128	2	1	Median	0.68385	0.82448	7.4347	2	1	Median	0.91339	0.90511	17.983	2	1	Median	0.88702	0.99099	NaN	1	0	Median	819110000	432420000	386700000	188910000	95772000	93143000	212590000	120710000	91879000	295540000	154060000	141480000	122060000	61875000	60189000	3925	679	3690	24232;24233;24234;24235;24236;24237;24238	33085;33086;33087;33088;33089;33090;33091;33092;33093;33094	33087			10	
AMNVLTEAEERYNDLMK	1	Unmodified	2025.95	0.94996162	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	87.032	87.032	3	0.0012309	77571	160511_QHF_FH_JSI11i_3	60.918	51.388			0.81812	0.78065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81812	0.78065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81702000	51302000	30400000	0	0	0	0	0	0	81702000	51302000	30400000	0	0	0	3926	679	3691	24239;24240;24241	33095;33096;33097	33095			3	
AMNWMSGK	1	Unmodified	923.39934	0.39934324	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	3	1	34.959	34.185	2	0.00041541	29857	160511_QHF_FH_JSI9i_2	109.01	75.274			1.1917	1.0263	31.195	7	1	Median	1.2521	1.0617	9.5978	2	0	Median	1.2067	1.427	46.623	2	0	Median	1.0581	1.0453	45.632	2	1	Median	0.93226	0.97928	NaN	1	0	Median	1433200000	711340000	721890000	211400000	96311000	115090000	297260000	151950000	145310000	385590000	192860000	192730000	538980000	270220000	268760000	3927	897	3692	24242;24243;24244;24245;24246;24247;24248;24249	33098;33099;33100;33101;33102;33103;33104;33105;33106;33107	33100			10	
AMPAQLRR	0	Unmodified	941.5229	0.52290427	5115	Q9NXX6	NSMCE4A	Non-structural maintenance of chromosomes element 4 homolog A	yes	yes	0	0	0	1	By MS/MS				12	0					1					1				7.1312	-2.9511	2	0.35646	2036	160513_QHF_FH_JSI9Kac_2	4.3563	0			1.3396	1.3025	NaN	1	0	Median	1.3396	1.3025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38901000	17637000	21264000	38901000	17637000	21264000	0	0	0	0	0	0	0	0	0	3928	5115	3693	24250	33108	33108			0	
AMPEEEPVRGPAK	1	Unmodified	1409.6973	0.6972994	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	23.926	23.623	3	8.0085E-05	20027	160511_QHF_FH_JSI11i_3	65.563	54.918			0.85177	0.80204	35.034	3	1	Median	NaN	NaN	NaN	0	0	Median	0.97294	1.1547	NaN	1	0	Median	0.85177	0.80204	NaN	1	0	Median	0.50529	0.57312	NaN	1	1	Median	245800000	149230000	96566000	0	0	0	49695000	31283000	18411000	122720000	69886000	52832000	73387000	48064000	25323000	3929	4096	3694	24251;24252;24253	33109;33110;33111;33112	33110			4	
AMPLQPSILR	0	Unmodified	1124.6376	0.63759967	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.685	62.405	2	0.0028398	53823	160511_QHF_FH_JSI12i_3	60.074	49.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3930	1638	3695	24254	33113	33113			1	
AMPVTKPITVTK	2	Acetyl (K)	1326.7581	0.75810874	4158	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				3	1	1	67.126	56.849	2	0.0044445	31368	160513_QHF_FH_JSI11Kac_4	65.347	47.035			0.88828	0.9711	32.507	5	0	Median	NaN	NaN	NaN	0	0	Median	0.87906	1.0501	42.89	3	0	Median	0.88828	0.86782	NaN	1	0	Median	0.91153	0.9711	NaN	1	0	Median	23141000	11862000	11279000	0	0	0	10551000	5207700	5343700	7241200	3753100	3488000	5348800	2901200	2447600	3931	4158	3696	24255;24256;24257;24258;24259	33114;33115;33116;33117;33118;33119;33120;33121	33117	3061		8	
AMPVTKPITVTK	2	Acetyl (K);Oxidation (M)	1342.753	0.75302336	4158	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	1	0	1	1			By MS/MS	By MS/MS	13.3	0.471						2	1					2	1	54.053	44.201	2	0.019681	23919	160513_QHF_FH_JSI12Kac_3	44.309	33.552			0.92974	0.98348	7.5571	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97655	0.91265	8.7734	2	0	Median	0.9038	0.98348	NaN	1	0	Median	7261000	3654500	3606600	0	0	0	0	0	0	3805700	2003300	1802500	3455300	1651200	1804100	3932	4158	3696	24260;24261;24262	33122;33123;33124;33125;33126	33126	3061	2403	5	
AMQADISQAAQILSSDPSR	0	Unmodified	1987.9633	0.9633035	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	77.934	77.418	2;3	1.7036E-25	70461	160511_QHF_FH_JSI12i_1	112.55	100.66			0.85981	0.82333	12.848	6	2	Median	1.2156	1.011	7.4148	2	0	Median	0.66085	0.79305	NaN	1	1	Median	0.85981	0.82333	0.20973	2	1	Median	0.74662	0.76231	NaN	1	0	Median	513240000	266310000	246930000	132390000	59352000	73039000	81991000	52534000	29457000	210730000	111160000	99562000	88136000	43260000	44876000	3933	1526	3697	24263;24264;24265;24266;24267;24268;24269;24270;24271	33127;33128;33129;33130;33131;33132;33133;33134;33135;33136;33137;33138	33131			12	
AMQDAEVSK	1	Oxidation (M)	993.44371	0.44371047	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.48	10				2	3				3	4	5	3	8.4064	5.7283	2	8.5084E-06	3665	160511_QHF_FH_JSI10i_1	114.97	99.529			0.93599	0.97218	84.465	15	1	Median	1.2775	1.0462	111.52	3	0	Median	0.8538	1.0139	46.293	4	0	Median	1.003	0.96636	127.63	5	1	Median	0.87795	0.93393	12.338	3	0	Median	6825600000	3097400000	3728200000	1709600000	738580000	971030000	1545600000	714420000	831220000	1975300000	794000000	1181300000	1595100000	850380000	744700000	3934	1480	3698	24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282;24283;24284;24285;24286	33139;33140;33141;33142;33143;33144;33145;33146;33147;33148;33149;33150;33151;33152;33153;33154	33148		1150	16	
AMQDAEVSK	1	Unmodified	977.4488	0.44879585	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.27	4	2	1			3				2	3	3	2	12.582	10.09	2	7.9461E-07	8646	160511_QHF_FH_JSI10i_1	136.57	121.13			0.8692	0.9302	18.262	10	0	Median	1.2947	1.0935	18.911	2	0	Median	0.74483	0.87938	7.1581	3	0	Median	1.0418	1.0183	15.2	3	0	Median	0.73274	0.78624	5.2813	2	0	Median	17619000000	8019800000	9599700000	4717500000	1769800000	2947700000	4557100000	2416900000	2140100000	4364600000	1861700000	2502900000	3980200000	1971200000	2009000000	3935	1480	3698	24287;24288;24289;24290;24291;24292;24293;24294;24295;24296	33155;33156;33157;33158;33159;33160;33161;33162;33163;33164;33165;33166	33159			12	
AMQEALAK	1	Unmodified	860.44259	0.44258826	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	18.023	15.71	2	0.0022922	13831	160511_QHF_FH_JSI12i_1	81.191	44.097			0.81555	0.87404	6.494	4	0	Linear	1.0482	0.86985	NaN	1	0	Median	0.75708	0.87825	NaN	1	0	Median	0.88067	0.84034	NaN	1	0	Median	0.93194	0.97677	NaN	1	0	Median	1152400000	567650000	584730000	201630000	70303000	131330000	333330000	186200000	147140000	312860000	159070000	153790000	304550000	152070000	152480000	3936	454	3699	24297;24298;24299;24300;24301	33167;33168	33167			2	
AMQGAGTQER	0	Unmodified	1047.4767	0.47674194	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	6.1134	4.9438	2	1.0361E-07	3639	160511_QHF_FH_JSI10i_1	122.13	86.255			0.95356	0.97425	15.023	9	0	Median	1.0701	0.88693	8.0532	2	0	Median	0.80998	0.98093	0.96658	2	0	Median	1.0283	1.0053	19.183	3	0	Median	0.79537	0.85243	22.569	2	0	Median	1856200000	976800000	879410000	291310000	136850000	154460000	571520000	309690000	261830000	477500000	270160000	207330000	515880000	260100000	255780000	3937	1170	3700	24302;24303;24304;24305;24306;24307;24308;24309;24310	33169;33170;33171;33172;33173;33174;33175;33176;33177;33178;33179;33180	33172			12	
AMQGLTGR	0	Unmodified	832.42252	0.42252152	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.5	0.5		2	2							1	1		2	15.409	14.772	2	0.0062827	11739	160511_QHF_FH_JSI12i_3	63.054	12.747			1.0402	0.99316	12.406	4	1	Median	1.1868	1.006	NaN	1	0	Median	0.87366	0.98049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0402	1.1062	18.501	2	0	Median	530840000	247500000	283340000	162510000	55998000	106520000	105700000	52076000	53622000	0	0	0	262620000	139420000	123200000	3938	1274	3701	24311;24312;24313;24314	33181;33182;33183	33183			3	
AMQGTEVGQTDQTDSTGGPAFLSK	1	Unmodified	2425.1067	0.10673286	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				57.098	55.947	3	5.9486E-08	49704	160511_QHF_FH_JSI9i_1	75.529	66.71			1.5883	1.2951	NaN	1	1	Median	1.5883	1.2951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34669000	9166000	25503000	34669000	9166000	25503000	0	0	0	0	0	0	0	0	0	3939	2899	3702	24315	33184	33184			1	
AMQIQEQK	1	Unmodified	974.48552	0.48551571	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.903	13.461	2	0.00014229	11008	160511_QHF_FH_JSI10i_1	125.5	69.822			0.80205	0.87947	14.203	4	1	Median	1.2664	1.059	NaN	1	0	Median	0.73493	0.85939	NaN	1	0	Median	0.76218	0.75052	NaN	1	1	Median	0.84401	0.90002	NaN	1	0	Median	952400000	455320000	497080000	207140000	66857000	140280000	248700000	149410000	99287000	240280000	114540000	125750000	256280000	124520000	131770000	3940	4989	3703	24316;24317;24318;24319	33185;33186;33187;33188;33189;33190;33191	33188			7	
AMQKIFAR	1	Acetyl (K);Acetyl (Protein N-term)	1047.5535	0.55353569	1044	P13929	ENO3	Beta-enolase	yes	yes	1	1	0	1		By MS/MS			14	0							1				1			81.357	70.846	2	0.031733	37303	160513_QHF_FH_JSI10Kac_4	38.962	21.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3941	1044	3704	24320	33192	33192			1	
AMQNNAKPEQK	2	Unmodified	1257.6136	0.61356977	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.34		5	5				1			2	2	4	3	5.3522	4.4569	2;3	2.9631E-47	2969	160511_QHF_FH_JSI11i_3	221.52	169.66			0.95485	0.94276	18.137	11	2	Median	0.97794	0.83915	15.559	2	1	Median	0.90472	1.0551	10.901	2	0	Median	0.97828	0.95384	21.596	4	1	Median	0.72461	0.73304	19.096	3	0	Plateau	2846000000	1530800000	1315200000	352340000	168880000	183460000	195280000	98487000	96796000	1260400000	690980000	569390000	1038000000	572430000	465590000	3942	2726	3705	24321;24322;24323;24324;24325;24326;24327;24328;24329;24330;24331	33193;33194;33195;33196;33197;33198;33199;33200;33201;33202;33203;33204	33194			12	
AMQNNAKPEQK	2	Oxidation (M)	1273.6085	0.60848439	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		5.2806	5.2806	2	0.0033442	2992	160511_QHF_FH_JSI11i_3	104.22	76.967			1.1035	1.0383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1035	1.0383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22102000	11796000	10306000	0	0	0	0	0	0	22102000	11796000	10306000	0	0	0	3943	2726	3705	24332	33205	33205		2108	1	
AMQQQVQK	1	Unmodified	959.48585	0.48585006	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	7.4964	7.1592	2	5.4369E-09	4740	160511_QHF_FH_JSI9i_1	132.09	90.592			1.2341	1.1084	122.78	4	1	Median	1.3085	1.0891	NaN	1	1	Median	0.75489	0.88417	NaN	1	0	Median	1.1639	1.128	NaN	1	0	Median	11.294	11.866	NaN	1	0	Median	1141900000	530680000	611270000	356750000	220760000	135990000	350810000	177610000	173200000	275350000	122190000	153150000	159040000	10117000	148930000	3944	5159	3706	24333;24334;24335;24336;24337	33206;33207;33208;33209;33210;33211	33211			6	
AMQQQVQK	1	Oxidation (M)	975.48076	0.48076468	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	4.9472	0.0017244	2	0.0032301	2402	160511_QHF_FH_JSI12i_1	82.305	58.106			0.85222	0.87147	21.034	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0657	1.0557	NaN	1	0	Median	1.0144	1.0752	29.709	2	0	Median	76594000	42366000	34228000	0	0	0	0	0	0	5223000	2814800	2408300	71371000	39551000	31820000	3945	5159	3706	24338;24339;24340	33212;33213	33212		2591	2	
AMQSLVK	1	Unmodified	775.42621	0.42620992	5594	Q9Y3E7	CHMP3	Charged multivesicular body protein 3	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		21.339	20.698	2	0.037155	17034	160511_QHF_FH_JSI11i_2	48.787	12.981			2.0538	1.9036	3.4928	2	0	Median	2.2732	1.9512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8556	1.8571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90371000	42295000	48076000	37385000	14518000	22867000	0	0	0	52986000	27777000	25209000	0	0	0	3946	5594	3707	24341;24342	33214	33214			1	
AMQTGVTGIMIAR	0	Unmodified	1347.7003	0.70027629	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.83	6.52		2	1					2	1	1	3	1	1	58.811	58.242	2	0.00012232	31381	160513_QHF_FH_JSI11Kac_6	98.353	60.878			0.71459	0.78881	11.032	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60599	0.72961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84265	0.85281	NaN	1	0	Median	60587000	39928000	20658000	0	0	0	25400000	17725000	7675000	0	0	0	35186000	22203000	12983000	3947	4083	3708	24343;24344;24345;24346;24347;24348	33215;33216;33217;33218;33219;33220	33216			6	
AMRTTFLHISK	1	Oxidation (M)	1319.702	0.70199085	250	O15120	AGPAT2	1-acyl-sn-glycerol-3-phosphate acyltransferase beta	yes	yes	0	0	1	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	30.861	30.38	3	0.035905	26256	160511_QHF_FH_JSI11i_3	38.402	25.525			1.3364	1.3028	34.895	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.59403	0.70663	NaN	1	0	Median	1.3704	1.2833	NaN	1	0	Median	1.3364	1.3028	NaN	1	0	Median	262610000	129090000	133530000	0	0	0	55383000	34895000	20488000	79358000	35092000	44266000	127870000	59100000	68774000	3948	250	3709	24349;24350;24351	33221	33221			1	
AMSIAQR	0	Unmodified	775.40106	0.4010578	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			13.872	13.027	2	0.010359	10385	160511_QHF_FH_JSI10i_3	65.672	28.578			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3949	4337	3710	24352	33222	33222			1	
AMSIGAR	0	Unmodified	704.36394	0.36394401	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		8	6.13			3					1	1	2	1	2		16.388	12.286	2	0.00070061	10895	160511_QHF_FH_JSI10i_3	129.96	62.967			0.93919	1.0446	15.248	5	0	Median	1.0943	0.91191	25.946	2	0	Median	0.8935	1.0446	NaN	1	0	Median	1.0402	0.99645	10.541	2	0	Median	NaN	NaN	NaN	0	0	Median	1361500000	645700000	715830000	238090000	94177000	143910000	290860000	158010000	132850000	832580000	393510000	439060000	0	0	0	3950	1264	3711	24353;24354;24355;24356;24357	33223;33224;33225	33223			3	
AMSIGAR	0	Oxidation (M)	720.35886	0.35885863	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	14.114	13.675	2	0.038346	10770	160511_QHF_FH_JSI9i_3	54.571	25.26			0.87596	0.94267	17.226	4	0	Median	1.3137	1.088	NaN	1	0	Median	0.8708	0.99326	NaN	1	0	Median	0.78774	0.72877	NaN	1	0	Median	0.88116	0.89466	NaN	1	0	Median	599520000	292020000	307490000	105460000	46234000	59226000	149230000	72045000	77181000	155820000	80349000	75470000	189010000	93395000	95618000	3951	1264	3711	24358;24359;24360;24361	33226	33226			1	
AMSKLGLR	1	Acetyl (K)	916.51642	0.51642191	87;242	E9PAV3;Q13765;O15069	NACA;NACAD	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;NAC-alpha domain-containing protein 1	no	no	1	0	0	1			By MS/MS		16	0									1			1		49.336	39.634	2	0.015831	21526	160513_QHF_FH_JSI11Kac_6	66.457	26.811			0.25819	0.24877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25819	0.24877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10976000	8843400	2132300	0	0	0	0	0	0	10976000	8843400	2132300	0	0	0	3952	87;242	3712	24362	33227	33227	56		1	
AMSLVSNEGEGEQNEIR	0	Unmodified	1861.8476	0.84760504	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	44.6	43.931	2	8.0485E-66	39751	160511_QHF_FH_JSI11i_1	234.82	215.58			1.1704	1.1215	12.854	4	0	Median	1.1873	0.96075	NaN	1	0	Median	0.99192	1.1564	NaN	1	0	Median	1.1538	1.0877	NaN	1	0	Median	1.282	1.3084	NaN	1	0	Median	224580000	101420000	123160000	50082000	21375000	28707000	51374000	23174000	28201000	66486000	31424000	35062000	56641000	25452000	31190000	3953	2547	3713	24363;24364;24365;24366;24367;24368;24369	33228;33229;33230;33231;33232;33233;33234;33235;33236;33237	33229			10	
AMSLVSSDSEGEQNELR	0	Unmodified	1850.8316	0.83162063	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.873	46.193	2	6.5146E-66	41009	160511_QHF_FH_JSI9i_1	235.73	195.14			0.72068	0.95254	29.398	4	0	Linear	0.66895	0.55657	NaN	1	0	Median	0.92036	1.0731	NaN	1	0	Median	1.0235	0.95856	NaN	1	0	Median	0.9227	0.94655	NaN	1	0	Median	381650000	203210000	178440000	116250000	61711000	54535000	97557000	55993000	41564000	70708000	33813000	36896000	97136000	51693000	45443000	3954	2549	3714	24370;24371;24372;24373	33238;33239;33240;33241;33242;33243;33244;33245	33245			8	
AMSTTSISSPQPGK	1	Oxidation (M)	1406.6711	0.67114423	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	1	0			By MS/MS	By matching	1	0	2											1	1	27.992	27.611	2	0.010721	24465	160511_QHF_FH_JSI11i_1	51.841	36.508			0.92632	0.91986	3.5905	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92956	0.8968	NaN	1	0	Median	0.9231	0.94352	NaN	1	0	Median	57592000	27046000	30547000	0	0	0	0	0	0	28697000	14035000	14663000	28895000	13011000	15884000	3955	5346	3715	24374;24375	33246	33246		2635	1	
AMSTTSISSPQPGK	1	Unmodified	1390.6762	0.67622961	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	1	2	28.46	27.604	2;3	2.8548E-17	24864	160511_QHF_FH_JSI12i_1	136.5	109.17			0.83983	0.69513	11.671	4	2	Median	0.85056	0.68829	1.4618	2	2	Median	0.59458	0.69481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83729	0.87131	NaN	1	0	Median	394910000	231210000	163700000	281210000	159980000	121220000	72486000	47384000	25103000	0	0	0	41218000	23838000	17381000	3956	5346	3715	24376;24377;24378;24379;24380;24381;24382	33247;33248;33249;33250;33251;33252	33248			6	
AMTDTFTLQAHDQFSPFSSSSGR	0	Unmodified	2517.1231	0.12305162	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.966	75.828	3	0.0017645	65786	160511_QHF_FH_JSI12i_3	41.166	33.89			1.0008	0.99458	16.617	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92564	0.88432	NaN	1	1	Median	1.082	1.1186	NaN	1	1	Median	43569000	20631000	22938000	0	0	0	0	0	0	18323000	8693000	9629500	25247000	11938000	13308000	3957	4223	3716	24383;24384	33253;33254	33254			2	
AMTGVEQWPYR	0	Unmodified	1336.6234	0.62340617	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.784	4	5	4							3	3	4	3	53.699	52.874	2	7.3582E-39	45278	160511_QHF_FH_JSI12i_2	210.75	181.66			1.0324	1.0343	5.2668	12	1	Median	1.2157	1.0444	9.6497	3	0	Median	0.83977	1.0155	0.33719	3	0	Median	0.99233	1.0275	2.416	3	1	Plateau	0.9525	1.0484	6.4792	3	0	Median	4954100000	2418200000	2535900000	952920000	407410000	545510000	1170700000	616710000	554040000	1561900000	777960000	783900000	1268600000	616130000	652450000	3958	1655	3717	24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397	33255;33256;33257;33258;33259;33260;33261;33262;33263;33264;33265;33266;33267;33268;33269;33270;33271;33272;33273;33274;33275;33276;33277;33278	33261			23	
AMTGVEQWPYR	0	Oxidation (M)	1352.6183	0.6183208	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.721	41.753	2	0.00030218	35836	160511_QHF_FH_JSI11i_2	81.099	67.329			0.95665	1.0329	10.013	4	0	Median	1.2134	1.0433	NaN	1	0	Median	0.83978	1.0225	NaN	1	0	Median	1.0898	1.1156	NaN	1	0	Median	0.8037	0.87994	NaN	1	0	Median	259510000	131830000	127680000	43881000	20211000	23669000	58084000	32607000	25477000	95246000	46440000	48806000	62300000	32576000	29724000	3959	1655	3717	24398;24399;24400;24401	33279;33280;33281;33282	33281		1329	3	
AMTHVINQGMAMYWGTSR	0	Unmodified	2052.9332	0.93320612	2384	Q13303;Q14722	KCNAB2;KCNAB1	Voltage-gated potassium channel subunit beta-2;Voltage-gated potassium channel subunit beta-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		73.517	65.048	3	2.4167E-12	35848	160513_QHF_FH_JSI10Kac_6	107.02	99.01			1.1484	1.1342	22.737	3	0	Median	1.8123	1.5842	NaN	1	0	Median	0.86758	1.0262	NaN	1	0	Median	1.1484	1.1342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	206200000	90427000	115770000	36664000	14468000	22197000	135900000	59104000	76792000	33635000	16855000	16780000	0	0	0	3960	2384	3718	24402;24403;24404	33283;33284;33285;33286	33286			4	
AMTIAKLK	2	Acetyl (K)	916.54157	0.54157402	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		55.743	44.92	2	0.052131	24741	160513_QHF_FH_JSI11Kac_5	54.549	26.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1798400	1798400	0	0	0	0	0	0	0	1798400	1798400	0	0	0	0	3961	1085	3719	24405	33287	33287			1	
AMTILLEEAK	1	Unmodified	1117.6053	0.60529649	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.29		5						3		2	2	2	2	65.864	61.733	2	1.1584E-09	53087	160511_QHF_FH_JSI12i_2	135.71	85.585			0.88662	0.919	27.178	6	1	Median	0.83028	0.70515	NaN	1	0	Median	0.78964	0.95181	23.347	2	0	Median	0.95104	0.94306	NaN	1	0	Median	1.0408	1.169	37.682	2	1	Median	718120000	409680000	308440000	199340000	129190000	70156000	140840000	80090000	60749000	211210000	107280000	103930000	166730000	93122000	73606000	3962	1857	3720	24406;24407;24408;24409;24410;24411;24412;24413	33288;33289;33290;33291;33292;33293;33294;33295;33296;33297	33289			10	
AMTKDNNLLGK	2	Acetyl (K)	1245.6387	0.63872189	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						4	2				2	2	2	50.709	41.032	2	5.2486E-15	23623	160513_QHF_FH_JSI11Kac_4	158.79	98.03			0.64253	0.76343	78.443	5	1	Median	NaN	NaN	NaN	0	0	Median	0.7024	0.83105	12.004	2	0	Median	0.31358	0.30413	44.473	2	0	Median	1.5861	1.7448	NaN	1	1	Median	20231000	13397000	6834500	0	0	0	7007900	4231600	2776200	9937200	7073300	2863900	3286200	2091900	1194300	3963	985;1827	3721	24414;24415;24416;24417;24418;24419	33298;33299;33300;33301;33302;33303;33304;33305;33306	33302	774		9	
AMTKDNNLLGK	2	Acetyl (K);Oxidation (M)	1261.6336	0.63363651	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	1	0	1	1			By MS/MS	By MS/MS	13	0						2						1	1	38.836	30.016	2	0.0017029	17305	160513_QHF_FH_JSI11Kac_3	71.349	47.921			0.45452	0.47103	26.277	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39929	0.39116	NaN	1	0	Median	0.5174	0.5672	NaN	1	0	Median	6233700	4413900	1819800	0	0	0	0	0	0	3917700	3025000	892670	2316000	1388900	927110	3964	985;1827	3721	24420;24421	33307	33307	774	561	1	
AMTKDNNLLGR	1	Acetyl (K)	1273.6449	0.6448699	954;1416;1108	P0DMV9;P0DMV8;P34931;P17066	HSPA1B;HSPA1A;HSPA1L;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	50.573	40.064	2	0.012462	22539	160513_QHF_FH_JSI10Kac_4	56.404	38.093			0.52306	0.55233	55.305	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91399	1.0686	NaN	1	0	Median	0.36399	0.35617	NaN	1	0	Median	0.52306	0.55233	NaN	1	0	Median	20369000	13510000	6859200	0	0	0	5322100	2810300	2511800	12017000	8706000	3311000	3029700	1993300	1036400	3965	954;1416;1108	3722	24422;24423;24424	33308;33309;33310;33311	33309	715		4	
AMTLMEYLIK	1	Unmodified	1211.6294	0.62940275	5727	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	96.909	96.605	2	4.6307E-13	83539	160511_QHF_FH_JSI12i_3	135.71	117.73			1.1087	1.0538	12.314	6	6	Median	1.211	1.0314	2.815	2	2	Median	0.9973	1.1893	16.873	2	2	Median	0.92187	0.92409	NaN	1	1	Median	1.0622	1.0727	NaN	1	1	Median	216770000	91667000	125100000	39572000	16722000	22850000	59025000	27422000	31604000	33855000	16591000	17264000	84318000	30933000	53384000	3966	5727	3723	24425;24426;24427;24428;24429;24430;24431	33312;33313;33314;33315;33316;33317;33318;33319	33319			8	
AMTLQEAEAFVGAER	0	Unmodified	1621.777	0.77700628	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	81.128	80.345	2;3	8.293E-41	69421	160511_QHF_FH_JSI12i_2	210.41	188.41			1.0531	1.0634	12.633	8	2	Median	1.1541	1.0002	10.209	2	1	Median	0.81023	1.0022	6.8428	2	1	Median	1.1057	1.1007	23.083	2	0	Median	1.073	1.1835	6.1046	2	0	Median	433000000	213810000	219190000	68979000	33926000	35052000	82454000	46720000	35734000	141450000	67959000	73487000	140120000	65201000	74915000	3967	236	3724	24432;24433;24434;24435;24436;24437;24438;24439	33320;33321;33322;33323;33324;33325;33326;33327;33328;33329;33330;33331;33332	33321			13	
AMTTGAIAAMLSTILYSR	0	Oxidation (M)	1885.9642	0.96415513	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	3	4	2	96.105	88.175	2;3	1.6323E-70	53499	160513_QHF_FH_JSI10Kac_6	214.83	201.69			1.2522	1.2704	41.7	8	2	Median	1.4997	1.2834	9.6578	2	1	Median	1.1258	1.3465	40.579	3	0	Median	0.86237	0.81599	77.671	2	1	Median	1.0867	1.1479	NaN	1	0	Median	2554500000	1149800000	1404800000	453390000	182300000	271090000	1178000000	567660000	610360000	491360000	224260000	267100000	431780000	175550000	256220000	3968	1177	3725	24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450	33333;33334;33335;33336;33337;33338;33339;33340;33341;33342;33343;33344	33344		800;801	12	
AMTTGAIAAMLSTILYSR	0	Unmodified	1869.9692	0.9692405	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	1.44				1					10	3	3	2	3	99.289	90.778	2;3	4.1381E-296	51875	160513_QHF_FH_JSI9Kac_6	368.65	351.53			1.1755	1.1016	6.7648	9	1	Median	1.2403	1.1016	4.7769	3	1	Median	0.85062	0.99488	3.2891	2	0	Median	1.2315	1.1579	5.939	2	0	Median	1.0172	1.0632	6.4229	2	0	Median	16566000000	8281000000	8284500000	4319800000	1878000000	2441900000	5929600000	3297400000	2632200000	3415200000	1495200000	1920000000	2900900000	1610400000	1290400000	3969	1177	3725	24451;24452;24453;24454;24455;24456;24457;24458;24459;24460;24461	33345;33346;33347;33348;33349;33350;33351;33352;33353;33354;33355;33356;33357;33358;33359	33350			15	
AMTTGAIAAMLSTILYSR	0	2 Oxidation (M)	1901.9591	0.95906975	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									6	1	2	1	2	88.89	80.841	2;3	4.1323E-17	46571	160513_QHF_FH_JSI10Kac_6	138.57	107.34			0.96354	0.93572	20.66	6	0	Median	0.986	0.86222	NaN	1	0	Median	0.74561	0.88176	3.1375	2	0	Median	1.0244	0.9712	NaN	1	0	Median	1.1453	1.2318	26.655	2	0	Median	495710000	258820000	236890000	65134000	23475000	41659000	259750000	151680000	108070000	28138000	15936000	12202000	142690000	67729000	74964000	3970	1177	3725	24462;24463;24464;24465;24466;24467	33360;33361;33362;33363;33364	33364		800;801	3	
AMVAQPAEK	1	Unmodified	943.4797	0.47970205	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		14.426	13.981	2	0.0043374	11301	160511_QHF_FH_JSI9i_1	67.494	47.647			0.89977	1.0595	15.334	3	1	Plateau	1.3109	1.0595	NaN	1	1	Median	0.69616	0.84775	NaN	1	0	Median	1.1629	1.1373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	183660000	97864000	85800000	60871000	30446000	30425000	66258000	41163000	25095000	56535000	26255000	30280000	0	0	0	3971	4572	3726	24468;24469;24470	33365;33366	33366			2	
AMVASGSELGK	1	Unmodified	1048.5223	0.52229515	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.62	4	4	1			2	1	1		4	2	4	3	27.022	24.231	2	1.8265E-18	20869	160511_QHF_FH_JSI9i_1	166.09	145.57			1.0195	1.0279	23.782	12	1	Median	1.218	0.98564	44.715	3	0	Median	0.85493	1.015	4.5465	2	0	Median	1.1861	1.153	7.5171	4	1	Median	0.86437	0.92943	20.204	3	0	Median	4990900000	2490300000	2500600000	1124700000	509160000	615580000	1249300000	692330000	556960000	1331900000	591180000	740750000	1284900000	697620000	587320000	3972	1835	3727	24471;24472;24473;24474;24475;24476;24477;24478;24479;24480;24481;24482;24483	33367;33368;33369;33370;33371;33372;33373;33374;33375;33376;33377;33378;33379;33380;33381;33382;33383;33384;33385;33386;33387	33381			21	
AMVASGSELGK	1	Oxidation (M)	1064.5172	0.51720977	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.92	11					3				2	2	5	5	21.109	18.499	2	0.00022002	12629	160511_QHF_FH_JSI12i_1	83.647	53.143			0.89901	0.90649	32.016	10	0	Median	0.9108	0.75448	3.4786	2	0	Median	1.2379	1.4177	48.518	2	0	Median	0.92714	0.9304	31.605	2	0	Median	0.86229	0.90649	23.483	4	0	Median	843820000	419880000	423940000	243220000	116630000	126580000	140770000	64574000	76200000	183010000	90308000	92698000	276830000	148370000	128460000	3973	1835	3727	24484;24485;24486;24487;24488;24489;24490;24491;24492;24493;24494;24495;24496;24497	33388;33389;33390;33391;33392;33393;33394;33395;33396;33397;33398;33399;33400;33401;33402;33403	33392		1512	15	
AMVASGSELGKK	2	Unmodified	1176.6173	0.61725816	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.524	17.562	3	0.024322	14151	160511_QHF_FH_JSI12i_3	34.685	25.252			0.346	0.34052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.346	0.34052	NaN	1	1	Median	346090000	239340000	106750000	0	0	0	0	0	0	0	0	0	346090000	239340000	106750000	3974	1835	3728	24498	33404	33404			1	
AMVDPAQTVEQR	0	Unmodified	1343.6503	0.65034921	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.704	38.077	2	5.1766E-11	34094	160511_QHF_FH_JSI10i_1	150.1	127.36			1.049	1.1537	17.762	3	1	Median	1.049	0.87139	NaN	1	1	Median	1.0449	1.2108	NaN	1	0	Median	1.1931	1.1537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	573280000	277250000	296030000	162170000	78930000	83241000	199710000	102400000	97301000	211410000	95917000	115490000	0	0	0	3975	1704	3729	24499;24500;24501;24502	33405;33406;33407;33408;33409	33408			5	
AMVEEMQGHLK	1	Unmodified	1271.6002	0.60022789	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	31.964	31.08	2	4.6428E-13	27247	160511_QHF_FH_JSI10i_2	147.51	125.42			1.2346	1.232	34.358	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86286	1.0566	NaN	1	0	Median	1.2346	1.232	NaN	1	0	Median	1.9387	2.0378	NaN	1	0	Median	101270000	49170000	52100000	0	0	0	33083000	20010000	13073000	51078000	22072000	29006000	17109000	7088400	10021000	3976	5635	3730	24503;24504;24505	33410;33411;33412;33413;33414	33414			5	
AMVEYEIDLQK	1	Unmodified	1337.6537	0.65370325	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	61.915	61.183	2	6.7644E-10	52531	160511_QHF_FH_JSI12i_2	138.11	126.95			1.0289	1.0396	9.5626	7	1	Median	1.2277	1.0396	NaN	1	0	Median	0.91419	1.0926	18.602	2	1	Median	1.0908	1.0863	8.2772	2	0	Median	0.97329	1.0374	9.6859	2	0	Median	784070000	358130000	425940000	91092000	29463000	61629000	271730000	139050000	132680000	221000000	104220000	116780000	200250000	85400000	114850000	3977	939	3731	24506;24507;24508;24509;24510;24511;24512	33415;33416;33417;33418;33419;33420;33421;33422;33423;33424;33425	33417			11	
AMVGFSGVMK	1	Unmodified	1025.5038	0.50380831	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	3	2	2	3	58.834	54.638	2	9.5006E-08	30128	160513_QHF_FH_JSI10Kac_6	118.5	86.14			1.0594	1.021	175.15	10	4	Plateau	1.6147	1.3641	147.74	3	1	Median	8.5197	10.332	253.77	2	1	Median	4.8485	4.5305	211.06	2	1	Median	1.0129	1.0235	229.13	3	1	Plateau	5760600000	1384500000	4376100000	787800000	221750000	566040000	1577000000	152430000	1424600000	1521800000	362310000	1159500000	1874000000	648040000	1226000000	3978	1604	3732	24513;24514;24515;24516;24517;24518;24519;24520;24521;24522	33426;33427;33428;33429;33430;33431;33432;33433;33434;33435;33436;33437;33438;33439	33439			13	
AMVGFSGVMK	1	Oxidation (M)	1041.4987	0.49872293	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	42.219	41.347	2	0.00072501	34500	160511_QHF_FH_JSI10i_3	73.248	60.26			1.1083	1.1881	29.7	2	0	Median	NaN	NaN	NaN	0	0	Median	1.276	1.4658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9627	0.96307	NaN	1	0	Median	172310000	82590000	89719000	0	0	0	50146000	19390000	30756000	0	0	0	122160000	63200000	58963000	3979	1604	3732	24523;24524;24525;24526	33440;33441;33442;33443;33444;33445	33441		1282	6	
AMVLAAFVQR	0	Unmodified	1104.6114	0.61138492	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.217	69.967	2	0.00044828	38194	160513_QHF_FH_JSI10Kac_6	89.55	74.399			0.78114	0.92763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78114	0.92763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99323000	51188000	48135000	0	0	0	99323000	51188000	48135000	0	0	0	0	0	0	3980	3430	3733	24527	33446	33446			1	
AMVLDLR	0	Unmodified	816.45276	0.45275902	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	50.716	49.756	2	0.0049913	42446	160511_QHF_FH_JSI12i_3	105.2	60.78			0.71912	0.73197	26.158	6	6	Median	0.69833	0.57715	18.625	2	2	Median	0.58107	0.70746	NaN	1	1	Median	0.86366	0.87531	NaN	1	1	Median	0.84549	0.91054	26.058	2	2	Median	3184400000	2074200000	1110300000	706870000	442010000	264850000	650080000	457350000	192730000	892410000	559170000	333240000	935060000	615620000	319440000	3981	5391	3734	24528;24529;24530;24531;24532;24533	33447;33448;33449;33450;33451;33452	33452			6	
AMVSEFLK	1	Acetyl (Protein N-term)	965.4892	0.4892041	805	P04083	ANXA1	Annexin A1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.33	4	4	2			2	2			2	4	5	3	93.22	90.01	2	3.3801E-05	85473	160511_QHF_FH_JSI12i_1	88.942	34.417			1.0153	1.0573	6.4851	13	0	Median	1.0825	0.9268	3.3856	2	0	Median	0.83674	1.0144	6.2609	4	0	Median	1.0806	1.0547	4.2116	4	0	Median	0.98808	1.0898	0.87599	3	0	Plateau	2141300000	1121500000	1019800000	555690000	270470000	285220000	571550000	329370000	242180000	597610000	317300000	280300000	416460000	204340000	212120000	3982	805	3735	24534;24535;24536;24537;24538;24539;24540;24541;24542;24543;24544;24545;24546;24547	33453;33454;33455;33456;33457;33458;33459;33460;33461;33462;33463;33464;33465;33466;33467;33468;33469;33470;33471;33472;33473;33474;33475;33476;33477;33478	33461			26	
AMVSEFLK	1	Acetyl (Protein N-term);Oxidation (M)	981.48412	0.48411873	805	P04083	ANXA1	Annexin A1	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	73.299	71.169	2	0.0014019	64960	160511_QHF_FH_JSI11i_1	46.426	34.521			0.89738	0.84252	62.226	5	1	Median	0.99163	0.84252	NaN	1	0	Median	0.71417	0.81116	NaN	1	0	Median	0.44224	0.426	98.063	2	1	Median	0.89738	0.91099	NaN	1	0	Median	109340000	60771000	48565000	27728000	14281000	13447000	23936000	15203000	8732600	32134000	19350000	12784000	25539000	11937000	13602000	3983	805	3735	24548;24549;24550;24551;24552	33479;33480;33481;33482;33483	33479		320	5	
AMVSNAQLDNEK	1	Unmodified	1318.6187	0.61871473	2804;5695	Q32MZ4;Q9Y608	LRRFIP1;LRRFIP2	Leucine-rich repeat flightless-interacting protein 1;Leucine-rich repeat flightless-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	26.613	24.409	2	4.261E-53	21745	160511_QHF_FH_JSI12i_1	215.87	193.23			0.94135	0.99383	11.935	5	0	Median	1.2469	1.0039	NaN	1	0	Median	0.64249	0.76333	NaN	1	0	Median	0.97143	0.93949	7.952	2	0	Median	0.94135	1.0031	NaN	1	0	Median	940600000	423600000	517010000	239560000	90193000	149360000	175730000	109720000	66012000	182260000	61551000	120710000	343050000	162130000	180920000	3984	2804;5695	3736	24553;24554;24555;24556;24557	33484;33485;33486;33487;33488;33489;33490;33491;33492;33493	33488			10	
AMVSNAQLDNEK	1	Oxidation (M)	1334.6136	0.61362935	2804;5695	Q32MZ4;Q9Y608	LRRFIP1;LRRFIP2	Leucine-rich repeat flightless-interacting protein 1;Leucine-rich repeat flightless-interacting protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									1	2	2		24.827	24.362	2	2.5089E-05	21349	160511_QHF_FH_JSI11i_1	119.27	99.133			1.3974	1.25	39.256	4	4	Median	1.354	1.1052	NaN	1	1	Median	1.4423	1.6684	NaN	1	1	Median	1.0072	0.97886	51.994	2	2	Median	NaN	NaN	NaN	0	0	Median	194120000	89201000	104920000	67858000	34317000	33541000	38906000	13817000	25089000	87354000	41067000	46287000	0	0	0	3985	2804;5695	3736	24558;24559;24560;24561;24562	33494;33495;33496;33497;33498	33495		2148	5	
AMYAVDLMLK	1	Unmodified	1153.5875	0.58753794	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.602	77.971	2	2.6315E-05	68479	160511_QHF_FH_JSI11i_2	97.431	83.312			1.0748	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0748	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51598000	18392000	33206000	0	0	0	0	0	0	51598000	18392000	33206000	0	0	0	3986	2509	3737	24563	33499	33499			1	
AMYLPDTLSPADQLK	1	Unmodified	1661.8335	0.83345853	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	3	3	79.007	78.488	2;3	2.1358E-16	71145	160511_QHF_FH_JSI10i_1	117.98	94.749			1.0583	1.0855	7.2652	7	2	Median	1.3152	1.09	13.786	2	0	Median	0.94142	1.1149	NaN	1	0	Median	1.0611	1.0344	6.8184	2	1	Median	1.0173	1.0511	5.2887	2	1	Median	547750000	295460000	252290000	140690000	59088000	81606000	37519000	22037000	15481000	200280000	119280000	81003000	169250000	95056000	74197000	3987	655	3738	24564;24565;24566;24567;24568;24569;24570;24571;24572;24573;24574	33500;33501;33502;33503;33504;33505;33506;33507;33508;33509;33510;33511;33512	33509			12	
AMYPDYFAK	1	Unmodified	1104.495	0.49501776	5741	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		54.316	53.727	2	0.00092498	46581	160511_QHF_FH_JSI11i_2	83.206	74.434			2.7516	2.4952	24.241	4	4	Median	2.7446	2.3401	NaN	1	1	Median	1.5074	1.7492	NaN	1	1	Median	2.9058	2.8706	10.746	2	2	Median	NaN	NaN	NaN	0	0	Median	718170000	184210000	533950000	138260000	29026000	109240000	168340000	67406000	100930000	411560000	87779000	323780000	0	0	0	3988	5741	3739	24575;24576;24577;24578	33513;33514;33515;33516	33516			4	
AMYPGTFYFQFK	1	Unmodified	1498.6955	0.69550848	4966	Q9NRW3	APOBEC3C	DNA dC->dU-editing enzyme APOBEC-3C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	4	3	3	88.146	85.006	2	4.8123E-25	40710	160513_QHF_FH_JSI12Kac_6	174.41	143.84			0.99031	1.0004	8.2528	12	2	Median	1.1395	0.97628	7.5859	3	0	Plateau	0.88631	1.0596	7.7481	3	0	Median	1.0071	0.99885	12.539	3	1	Median	0.93261	0.95858	8.1229	3	1	Plateau	2802700000	1371800000	1430900000	607880000	289170000	318710000	769070000	390290000	378780000	641530000	295820000	345710000	784190000	396480000	387710000	3989	4966	3740	24579;24580;24581;24582;24583;24584;24585;24586;24587;24588;24589;24590;24591	33517;33518;33519;33520;33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540;33541;33542	33540			26	
AMYPGTFYFQFK	1	Oxidation (M)	1514.6904	0.69042311	4966	Q9NRW3	APOBEC3C	DNA dC->dU-editing enzyme APOBEC-3C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.504	73.257	2	5.469E-24	38465	160513_QHF_FH_JSI12Kac_6	163.38	153.43			1.0947	1.0489	12.436	4	1	Median	1.2157	1.0394	NaN	1	0	Median	1.0585	1.258	NaN	1	1	Median	1.1322	1.0586	NaN	1	0	Median	0.88181	0.93117	NaN	1	0	Median	686340000	344030000	342310000	151060000	68262000	82799000	161790000	82336000	79452000	190260000	90527000	99731000	183230000	102900000	80328000	3990	4966	3740	24592;24593;24594;24595	33543;33544;33545;33546;33547;33548;33549	33547		2562	7	
AMYQYRPQNEDELELR	0	Unmodified	2053.9527	0.95273882	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			52.617	51.041	3	1.2225E-05	42683	160511_QHF_FH_JSI10i_3	102.28	91.619			1.1459	1.1134	15.534	2	1	Median	1.5164	1.2427	NaN	1	1	Median	0.86584	0.99758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79909000	33416000	46493000	27409000	6860900	20548000	52500000	26555000	25945000	0	0	0	0	0	0	3991	422	3741	24596;24597	33550;33551;33552	33551			3	
ANACNSVIK	1	Unmodified	975.48076	0.48076468	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.963	11.565	2	2.6129E-05	9405	160511_QHF_FH_JSI12i_1	104.2	81.178			1.2458	1.3209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2458	1.3209	NaN	1	0	Median	250340000	120310000	130020000	0	0	0	0	0	0	0	0	0	250340000	120310000	130020000	3992	1103	3742	24598	33553;33554	33553			2	
ANAEELANNLK	1	Unmodified	1185.599	0.59896556	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	38.916	38.471	2	0.00015056	34876	160511_QHF_FH_JSI12i_1	83.438	72.286			0.94541	0.94525	29.395	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78065	0.76785	NaN	1	0	Median	1.145	1.1636	NaN	1	0	Median	364800000	192430000	172370000	0	0	0	0	0	0	235820000	122860000	112960000	128980000	69565000	59414000	3993	3377	3743	24599;24600;24601	33555;33556	33555			2	
ANAEEMTK	1	Unmodified	892.39603	0.396032	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.7646	7.4169	2	0.00064102	5139	160511_QHF_FH_JSI11i_1	101.54	81.26			1.6136	1.5654	7.4262	4	0	Median	1.7737	1.4634	NaN	1	0	Median	1.3348	1.5793	NaN	1	0	Median	1.5989	1.5515	NaN	1	0	Median	1.6285	1.7492	NaN	1	0	Median	1711600000	751060000	960570000	474680000	196530000	278150000	493960000	234990000	258970000	362670000	168670000	193990000	380320000	150860000	229460000	3994	2438	3744	24602;24603;24604;24605	33557;33558;33559;33560;33561;33562;33563;33564	33558			8	
ANAEKTSGSNVK	2	Acetyl (K)	1246.6153	0.61534391	1878	P56381	ATP5E	ATP synthase subunit epsilon, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.782				1	5	4	1				4	5	2	10.634	3.0973	2;3	0.0011743	4104	160513_QHF_FH_JSI12Kac_3	81.865	61.536			0.79065	0.86315	104.83	10	1	Median	NaN	NaN	NaN	0	0	Median	0.92722	1.1122	4.6206	4	0	Median	0.38696	0.37312	122.14	4	1	Median	0.79065	0.86315	1.5157	2	0	Median	210570000	123430000	87135000	0	0	0	65642000	32646000	32996000	80154000	52861000	27292000	64774000	37928000	26846000	3995	1878	3745	24606;24607;24608;24609;24610;24611;24612;24613;24614;24615;24616	33565;33566;33567;33568;33569;33570;33571;33572;33573;33574;33575;33576;33577;33578;33579	33574	1891		15	
ANAEYMSPSGK	1	Unmodified	1153.5074	0.50737336	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	16.587	16.115	2	5.8563E-06	13637	160511_QHF_FH_JSI10i_1	110.53	93.57			1.2956	1.2415	19.855	4	1	Median	1.3083	1.073	NaN	1	0	Median	1.283	1.5151	NaN	1	0	Median	1.0562	1.0267	NaN	1	0	Median	1.4139	1.4364	NaN	1	1	Median	457330000	201180000	256150000	106990000	34883000	72108000	143720000	72709000	71009000	124260000	59351000	64913000	82360000	34242000	48118000	3996	524	3746	24617;24618;24619;24620;24621	33580;33581;33582;33583;33584;33585	33583			6	
ANAHFILK	1	Unmodified	912.51814	0.51813647	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			6							2	2	1	1	26.873	25.975	2;3	0.0012023	21204	160511_QHF_FH_JSI9i_3	60.59	49.079			0.95075	1.0354	51.289	6	0	Median	1.2621	1.0371	5.877	2	0	Median	0.945	1.0916	1.837	2	0	Median	0.31565	0.2992	NaN	1	0	Median	0.94981	0.96821	NaN	1	0	Median	573130000	287700000	285430000	148080000	65956000	82127000	169760000	92674000	77086000	56901000	44367000	12534000	198390000	84706000	113680000	3997	641	3747	24622;24623;24624;24625;24626;24627	33586;33587;33588;33589;33590;33591	33588			6	
ANAIPDGPR	0	Unmodified	909.46683	0.46682918	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.863	17.61	2	0.01075	14943	160511_QHF_FH_JSI10i_1	58.981	43.83			1.3585	1.5768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3585	1.5768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115390000	45367000	70021000	0	0	0	115390000	45367000	70021000	0	0	0	0	0	0	3998	5549	3748	24628	33592	33592			1	
ANALHATNNLQIIPDFSLK	1	Unmodified	2079.1113	0.11128837	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	86.054	85.428	3	5.5764E-11	74234	160511_QHF_FH_JSI12i_3	131.11	120.92			1.0284	1.0447	75.293	5	2	Median	5.0729	4.4269	NaN	1	1	Median	0.85667	1.0007	NaN	1	0	Median	0.84548	0.8203	48.175	2	1	Median	1.0284	1.0447	NaN	1	0	Median	318860000	156490000	162370000	4298900	539450	3759500	27657000	13705000	13952000	137990000	68917000	69069000	148910000	73329000	75585000	3999	5222	3749	24629;24630;24631;24632;24633	33593;33594;33595;33596;33597;33598;33599;33600;33601;33602	33601			10	
ANALLIR	0	Unmodified	769.48102	0.48102268	1330	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				32.699	31.657	2	0.010543	27577	160511_QHF_FH_JSI9i_2	80.294	35.321			0.67566	0.57724	NaN	1	1	Median	0.67566	0.57724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59880000	35782000	24098000	59880000	35782000	24098000	0	0	0	0	0	0	0	0	0	4000	1330	3750	24634	33603	33603			1	
ANAPPTPLPMHSSK	1	Unmodified	1446.7289	0.72893388	3745	Q8TF74	WIPF2	WAS/WASL-interacting protein family member 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.327	30.262	3	0.00097959	25457	160511_QHF_FH_JSI12i_3	48.405	41.676			1.4382	1.3935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4382	1.3935	NaN	1	0	Median	30856000	11882000	18973000	0	0	0	0	0	0	0	0	0	30856000	11882000	18973000	4001	3745	3751	24635	33604	33604			1	
ANAQAAALYK	1	Unmodified	1019.54	0.53999412	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.88	4	4				4	2			3	3	4	4	23.516	19.006	2	4.1039E-14	17318	160511_QHF_FH_JSI10i_2	161.02	131.87			1.0101	1.0602	12.038	14	0	Median	1.0774	1.0524	13.781	3	0	Plateau	0.9239	1.119	12.134	3	0	Plateau	1.2231	1.195	11.995	4	0	Linear	1.0187	1.0892	6.0957	4	0	Median	3558900000	1746600000	1812300000	1039000000	468390000	570580000	757260000	397740000	359510000	793470000	366600000	426880000	969210000	513850000	455370000	4002	1490	3752	24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647;24648;24649	33605;33606;33607;33608;33609;33610;33611;33612;33613;33614;33615;33616;33617;33618;33619;33620;33621;33622;33623;33624	33623			18	
ANAQVLGNNSR	0	Unmodified	1142.5792	0.57923317	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5.33	6.13	2						1			1		2		12.643	11.794	2	0.00344	9198	160511_QHF_FH_JSI9i_1	68.557	53.693			0.77859	0.65092	NaN	1	1	Median	0.77859	0.65092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27379000	13777000	13602000	27379000	13777000	13602000	0	0	0	0	0	0	0	0	0	4003	3022	3753	24650;24651;24652	33625;33626;33627	33627			3	
ANASPQKPLDLK	2	Acetyl (K)	1322.7194	0.71941505	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.687					2	3	1				3	1	2	52.5	42.983	2	0.00053659	23214	160513_QHF_FH_JSI12Kac_3	87.184	75.137			0.88406	0.96148	6.1637	5	0	Median	NaN	NaN	NaN	0	0	Median	0.74426	0.88761	2.7326	2	0	Median	0.97642	0.96148	NaN	1	0	Median	0.92152	0.995	3.1442	2	0	Median	83929000	45325000	38603000	0	0	0	29624000	16925000	12700000	20261000	11250000	9011200	34043000	17150000	16893000	4004	5698	3754	24653;24654;24655;24656;24657;24658	33628;33629;33630;33631;33632;33633;33634;33635;33636;33637	33633	3528		10	
ANDDIIVNWVNR	0	Unmodified	1427.7157	0.71572665	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.82	4	8	4				3	4		6	7	5	5	74.046	70.48	2;3	5.8223E-93	61656	160511_QHF_FH_JSI12i_2	255.19	236.41			1.1397	1.1806	23.367	21	6	Median	1.6536	1.3598	15.2	5	2	Median	0.95097	1.1586	21.472	6	3	Median	1.1397	1.1754	37.613	5	1	Median	1.0869	1.1271	14.137	5	0	Median	3390300000	1513000000	1877300000	475810000	188080000	287740000	832440000	403170000	429270000	1222200000	522860000	699300000	859940000	398930000	461010000	4005	1039	3755	24659;24660;24661;24662;24663;24664;24665;24666;24667;24668;24669;24670;24671;24672;24673;24674;24675;24676;24677;24678;24679;24680;24681	33638;33639;33640;33641;33642;33643;33644;33645;33646;33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661;33662;33663;33664;33665;33666	33642			29	
ANDEANQSDTSVSLSEPK	1	Unmodified	1890.8443	0.8442938	716	O95684	FGFR1OP	FGFR1 oncogene partner	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.175	30.845	2	2.5522E-08	27500	160511_QHF_FH_JSI10i_1	127.36	111.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7700600	7700600	0	0	0	0	7700600	7700600	0	0	0	0	0	0	0	4006	716	3756	24682	33667	33667			1	
ANDGEGGDEEAGTEEAVPR	0	Unmodified	1901.7875	0.78750721	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.873	23.656	2	2.8845E-42	20630	160511_QHF_FH_JSI11i_1	204.43	180.13			1.156	1.1883	8.9861	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.2663	NaN	1	1	Median	1.1882	1.1151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58770000	24980000	33790000	0	0	0	34089000	11576000	22513000	24681000	13404000	11278000	0	0	0	4007	4701	3757	24683;24684;24685	33668;33669;33670	33668			3	
ANDKGRNKGFEAMYR	2	Oxidation (M)	1771.8424	0.84240051	1	A0A075B6T8	TRAV9-1		yes	yes	0	0	1	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.376	81.081	2	0.0028006	46899	160513_QHF_FH_JSI10Kac_6	63.473	24.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	366590000	366590000	0	83342000	83342000	0	137040000	137040000	0	80610000	80610000	0	65595000	65595000	0	4008	1	3758	24686;24687;24688;24689	33671;33672;33673;33674	33674		0	4	
ANDLTHSLSSYLK	1	Unmodified	1447.7307	0.73070802	4353	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	61.836	61.053	2;3	2.8825E-05	54091	160511_QHF_FH_JSI10i_2	77.192	64.565			0.926	0.93508	36.815	5	2	Median	1.339	1.1279	NaN	1	1	Median	0.94852	1.1489	NaN	1	0	Median	0.926	0.93508	NaN	1	0	Median	0.58031	0.60524	36.268	2	1	Median	415710000	180090000	235620000	70122000	28711000	41411000	158730000	50298000	108430000	113840000	52058000	61778000	73025000	49019000	24006000	4009	4353	3759	24690;24691;24692;24693;24694;24695	33675;33676;33677;33678;33679;33680;33681	33679			7	
ANDSGGPGGPSPSERDR	0	Acetyl (Protein N-term)	1696.7401	0.7401035	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	12.941	12.616	2	0.0092661	10284	160511_QHF_FH_JSI10i_1	63.091	36.972			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4010	4609	3760	24696;24697	33682;33683	33683			2	
ANDTQEFNLSAYFER	0	Unmodified	1803.8064	0.80639216	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	83.255	82.748	2	3.004E-05	71299	160511_QHF_FH_JSI12i_2	82.362	66.108			0.7341	0.72936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7341	0.72936	NaN	1	1	Median	15922000	9940200	5981400	0	0	0	0	0	0	0	0	0	15922000	9940200	5981400	4011	1734	3761	24698;24699;24700	33684;33685;33686	33684			3	
ANDTTFGLAAGVFTR	0	Unmodified	1539.7682	0.76815616	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.745	5	8	5							3	4	5	6	78.691	78.039	2;3	3.1876E-11	69400	160511_QHF_FH_JSI10i_2	184.21	137.37			1.1437	1.1337	19.959	18	7	Median	1.3148	1.1534	19.847	3	1	Median	0.87341	1.0327	24.582	4	1	Median	1.2198	1.1711	17.907	5	3	Median	1.0767	1.1346	22.672	6	2	Median	1135000000	560970000	573980000	142810000	60527000	82288000	282800000	153870000	128930000	278650000	134360000	144280000	430700000	212210000	218480000	4012	1645	3762	24701;24702;24703;24704;24705;24706;24707;24708;24709;24710;24711;24712;24713;24714;24715;24716;24717;24718	33687;33688;33689;33690;33691;33692;33693;33694;33695;33696;33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707;33708;33709	33706			22	
ANDVLLSHMITFLNDK	1	Unmodified	1829.9346	0.93456956	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	100.8	100.75	3	7.4313E-11	87333	160511_QHF_FH_JSI12i_3	146.58	129.9			1.0375	1.0418	16.933	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8894	1.0418	NaN	1	0	Median	0.91842	0.85626	NaN	1	0	Median	1.1719	1.1996	NaN	1	0	Median	233750000	110180000	123560000	0	0	0	17770000	9086200	8684100	104190000	47621000	56569000	111790000	53477000	58310000	4013	4286	3763	24719;24720;24721	33710;33711;33712;33713	33713			3	
ANEDELK	1	Unmodified	817.38176	0.38176214	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	8.5845	6.8411	2	0.011237	5420	160511_QHF_FH_JSI9i_1	71.379	26.298			0.854	0.87022	32.671	5	1	Median	1.065	0.87022	NaN	1	0	Median	0.7961	0.93385	NaN	1	0	Median	1.2141	1.1905	48.438	2	1	Median	0.66312	0.71201	NaN	1	0	Median	1484400000	721560000	762860000	379830000	165080000	214760000	353170000	200990000	152180000	372200000	155410000	216790000	379220000	200090000	179130000	4014	2598	3764	24722;24723;24724;24725;24726	33714;33715;33716;33717;33718;33719;33720;33721	33720			8	
ANEHQGIGFLNDPR	0	Unmodified	1566.7539	0.75390307	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	40.456	40.184	2;3	3.4492E-06	35230	160511_QHF_FH_JSI11i_3	150.68	102.04			1.1004	1.0275	72.423	5	3	Median	NaN	NaN	NaN	0	0	Median	4.0494	4.9794	NaN	1	1	Median	1.1586	1.0874	8.3298	2	1	Median	0.89436	0.93023	14.068	2	1	Median	906770000	215690000	691080000	0	0	0	563230000	36776000	526450000	176900000	81086000	95817000	166640000	97831000	68813000	4015	3904	3765	24727;24728;24729;24730;24731	33722;33723;33724;33725;33726	33723			5	
ANELFYLSHK	1	Unmodified	1220.619	0.61897272	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				54.57	45.359	2	0.045112	24113	160513_QHF_FH_JSI9Kac_6	42.802	31.973			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4016	2343	3766	24732	33727	33727			1	
ANENSNIQVLSER	0	Unmodified	1472.7219	0.72193424	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	34.938	34.336	2	1.1589E-07	30819	160511_QHF_FH_JSI11i_1	139.78	106.59			0.838	0.81781	16.566	5	4	Median	1.315	1.0678	NaN	1	1	Median	0.63364	0.74199	NaN	1	1	Median	0.838	0.81781	NaN	1	0	Median	0.79949	0.83689	19.337	2	2	Median	227890000	110220000	117670000	51771000	16344000	35427000	41881000	22740000	19141000	53646000	29346000	24300000	80592000	41793000	38800000	4017	3143	3767	24733;24734;24735;24736;24737;24738	33728;33729;33730;33731;33732;33733;33734;33735	33728			8	
ANEQLGLTSMHTLWFR	0	Unmodified	1902.9411	0.94105192	3865	Q92626	PXDN	Peroxidasin homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.34	75.747	3	0.0046862	41732	160513_QHF_FH_JSI10Kac_6	53.453	34.621			0.54554	0.65235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54554	0.65235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32723000	20719000	12004000	0	0	0	32723000	20719000	12004000	0	0	0	0	0	0	4018	3865	3768	24739	33736	33736			1	
ANEVEQMIR	0	Unmodified	1088.5284	0.52844316	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1.25	0.433	3	1								1	2	1		35.786	35.086	2	0.0023438	30886	160511_QHF_FH_JSI10i_2	74.464	34.361			1.3492	1.3552	77.11	4	1	Median	1.5713	1.2847	NaN	1	0	Median	2.3681	2.8286	96.514	2	1	Median	1.0306	1.0134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	434510000	157740000	276770000	58563000	12109000	46454000	247820000	84426000	163390000	128130000	61207000	66926000	0	0	0	4019	2517	3769	24740;24741;24742;24743	33737;33738	33738			2	
ANEVISK	1	Unmodified	759.41267	0.41266834	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.74	4	1			1	1	1			1	3	3	1	10.41	7.3778	2	0.0098703	6712	160511_QHF_FH_JSI11i_1	77.282	14.565			0.85149	0.96186	135.33	8	0	Median	1.329	1.1139	NaN	1	0	Median	0.85367	1.0267	99.726	3	0	Median	0.41389	0.40553	198.1	3	0	Median	0.84932	0.90111	NaN	1	0	Median	9788700000	4872000000	4916700000	2049600000	886080000	1163500000	2653100000	1305700000	1347500000	2575800000	1327300000	1248500000	2510200000	1353000000	1157200000	4020	1721	3770	24744;24745;24746;24747;24748;24749;24750;24751	33739;33740;33741;33742;33743;33744;33745;33746;33747;33748	33740			10	
ANEVISKLYAVHQEGNK	2	Acetyl (K)	1940.9956	0.99558991	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	69.522	60.528	3	1.6288E-43	32781	160513_QHF_FH_JSI11Kac_6	179.87	157.4			0.57115	0.62123	74.065	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0841	1.2771	NaN	1	0	Median	0.29943	0.29039	NaN	1	0	Median	0.57115	0.62123	NaN	1	0	Median	143060000	100750000	42310000	0	0	0	35584000	18239000	17346000	85412000	67602000	17810000	22063000	14908000	7154600	4021	1721	3771	24752;24753;24754	33749;33750;33751;33752;33753	33750	1728		5	
ANEYDFKK	2	Unmodified	1013.4818	0.48181054	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			15.202	14.532	2	0.051448	12125	160511_QHF_FH_JSI10i_2	51.066	19.777			0.59628	0.71599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59628	0.71599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18301000	13360000	4941400	0	0	0	18301000	13360000	4941400	0	0	0	0	0	0	4022	3765	3772	24755	33754	33754			1	
ANFDKESER	1	Acetyl (K)	1136.5098	0.5098162	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				2	1		25.139	16.884	2	0.010655	10424	160513_QHF_FH_JSI10Kac_3	61.65	49.881			0.31877	0.32057	73.953	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87426	1.0319	7.3252	2	0	Median	0.29187	0.28756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34487000	23344000	11143000	0	0	0	13957000	7554800	6402500	20530000	15790000	4740200	0	0	0	4023	2585	3773	24756;24757;24758	33755;33756;33757	33757	2559		3	
ANFENLAK	1	Unmodified	905.46068	0.46068117	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		30.261	29.607	2	0.0030613	25612	160511_QHF_FH_JSI9i_2	74.127	55.397			0.8777	0.97006	2.5942	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80854	0.98802	NaN	1	0	Median	0.95278	0.95243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	368920000	212490000	156430000	0	0	0	128270000	70176000	58097000	240650000	142310000	98334000	0	0	0	4024	2522	3774	24759;24760;24761	33758;33759	33758			2	
ANFMAIR	0	Unmodified	821.42179	0.42179324	665	O95249	GOSR1	Golgi SNAP receptor complex member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.474	38.384	2	0.049013	32763	160511_QHF_FH_JSI12i_3	43.066	14.751			0.8631	0.85417	0.075657	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8867	0.85372	NaN	1	0	Median	0.84013	0.85463	NaN	1	0	Median	158750000	86236000	72512000	0	0	0	0	0	0	62069000	33287000	28782000	96679000	52949000	43730000	4025	665	3775	24762;24763	33760;33761	33760			2	
ANFSLPEK	1	Unmodified	904.46543	0.46543219	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	2	2	40.285	38.247	2	0.0031048	34137	160511_QHF_FH_JSI10i_1	81.548	57.361			1	1.0885	25.37	7	2	Median	1.1533	0.9589	20.937	2	0	Median	1	1.1584	NaN	1	1	Median	1.0406	1.0297	27.832	2	0	Median	0.76861	0.81561	40.82	2	1	Median	719890000	353240000	366650000	149400000	75023000	74380000	152820000	67415000	85405000	273850000	131460000	142390000	143810000	79337000	64477000	4026	2785	3776	24764;24765;24766;24767;24768;24769;24770	33762;33763;33764;33765;33766;33767;33768	33764			7	
ANFVPFIAVLK	1	Unmodified	1217.7172	0.7172302	3776	Q8WV93	LACE1	Lactation elevated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.98	101	2	0.00036898	87632	160511_QHF_FH_JSI12i_3	73.233	65.954			0.59999	0.63453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59999	0.63453	NaN	1	0	Median	58967000	38537000	20429000	0	0	0	0	0	0	0	0	0	58967000	38537000	20429000	4027	3776	3777	24771	33769	33769			1	
ANFWYQPSFHGVDLSALR	0	Unmodified	2107.0276	0.02755874	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	1	2	91.326	87.703	3	3.095E-12	42669	160513_QHF_FH_JSI9Kac_6	129.46	115.63			1.143	1.1202	10.691	7	3	Median	1.3531	1.1439	2.9675	2	1	Median	0.99732	1.1721	23.171	2	1	Median	1.1895	1.1379	NaN	1	0	Median	1.0147	1.0504	2.3519	2	1	Median	1132700000	548400000	584310000	342500000	152280000	190220000	324190000	171810000	152390000	180480000	79678000	100810000	285540000	144640000	140900000	4028	3371	3778	24772;24773;24774;24775;24776;24777;24778	33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781	33776			12	
ANGHLLLNSEK	1	Unmodified	1194.6357	0.63568542	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.81	0.39		3	13							4	6	2	4	19.864	19.186	2;3	2.7722E-06	15534	160511_QHF_FH_JSI12i_3	117.7	105.17			0.94439	0.87383	59.505	16	9	Median	1.4521	1.2242	39.109	4	2	Median	0.86375	1.0206	57.858	6	5	Median	0.94439	0.87383	3.9916	2	0	Median	0.45073	0.45744	69.73	4	2	Median	1319900000	692510000	627380000	180720000	79864000	100850000	396670000	192260000	204410000	228680000	109030000	119650000	513820000	311360000	202470000	4029	5215	3779	24779;24780;24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794	33782;33783;33784;33785;33786;33787;33788;33789;33790;33791;33792;33793;33794;33795;33796;33797;33798;33799	33798			16	
ANGMELDGRR	0	Unmodified	1117.5298	0.52984014	2044;2447	P62995;Q13595	TRA2B;TRA2A	Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha	no	no	0	0	0	1	By MS/MS	By matching			2	0		2								1	1			12.369	11.785	2	0.0035433	9496	160511_QHF_FH_JSI9i_2	56.434	24.079			1.0004	1.0333	25.614	2	0	Median	1.4367	1.2385	NaN	1	0	Median	0.69654	0.86215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48170000	23992000	24178000	19787000	9733100	10054000	28383000	14259000	14124000	0	0	0	0	0	0	4030	2044;2447	3780	24795;24796	33800	33800			1	
ANGMGVIGQDGLLFK	1	Unmodified	1518.7864	0.78644876	4928	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.083	81.21	2	0.00010785	71396	160511_QHF_FH_JSI11i_2	111.94	87.082			0.9901	1.0321	7.7371	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0942	1.0902	NaN	1	1	Median	0.89591	0.97717	NaN	1	1	Median	70811000	38476000	32335000	0	0	0	0	0	0	51979000	29030000	22948000	18832000	9445400	9387100	4031	4928	3781	24797;24798	33801;33802	33802			2	
ANGTSALTAQNGK	1	Unmodified	1231.6157	0.61567826	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					1	2	1	13.48	10.893	2	3.1776E-07	9136	160511_QHF_FH_JSI11i_1	137.01	100.58			1.3593	1.3165	16.757	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3112	1.5554	NaN	1	0	Median	1.279	1.2102	11.906	2	0	Median	NaN	NaN	NaN	0	0	Median	120820000	61781000	59037000	0	0	0	55585000	27732000	27853000	65233000	34049000	31184000	0	0	0	4032	2586	3782	24799;24800;24801;24802	33803;33804;33805;33806;33807;33808	33803			6	
ANGTTVHVGIHPSK	1	Unmodified	1416.7474	0.74736113	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	5.94		7	12						7	9	7	5	5	19.266	16.57	2;3;4	7.4214E-40	13082	160511_QHF_FH_JSI11i_3	199.31	182.4			0.95361	1.0184	18.968	24	2	Median	1.4078	1.1598	10.208	7	0	Median	0.80274	0.97929	7.3173	7	0	Median	1.0563	1.0298	26.656	5	1	Median	0.79821	0.82181	19.441	5	1	Median	14466000000	6600100000	7866400000	2595300000	933480000	1661900000	3020600000	1480800000	1539800000	4253400000	1814700000	2438700000	4597100000	2371100000	2225900000	4033	1949;5450	3783	24803;24804;24805;24806;24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824;24825;24826;24827;24828	33809;33810;33811;33812;33813;33814;33815;33816;33817;33818;33819;33820;33821;33822;33823;33824;33825;33826;33827;33828;33829;33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844;33845;33846;33847;33848;33849;33850;33851;33852;33853;33854	33813			46	
ANHEEVLAAGK	1	Unmodified	1137.5778	0.57783619	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	5.92	2	9	6				1	7		5	9	6	5	13.733	10.541	2;3	1.3039E-29	9355	160511_QHF_FH_JSI10i_2	188.87	161.62			0.90585	0.9325	21.655	23	7	Median	1.1155	0.92987	14.164	4	1	Median	0.79255	0.96555	29.938	8	5	Median	0.92416	0.89786	9.0757	6	0	Median	0.86847	0.96351	19.489	5	1	Median	3339900000	1726600000	1613300000	484280000	216720000	267570000	829380000	438710000	390670000	1198800000	633480000	565290000	827500000	437710000	389790000	4034	771	3784	24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843;24844;24845;24846;24847;24848;24849;24850;24851;24852;24853	33855;33856;33857;33858;33859;33860;33861;33862;33863;33864;33865;33866;33867;33868;33869;33870;33871;33872;33873;33874;33875;33876;33877;33878;33879;33880;33881;33882;33883;33884;33885;33886;33887;33888	33885			34	
ANHFFTVTDPR	0	Unmodified	1303.6309	0.63093439	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							5	3	2	2	40.241	39.32	2;3	1.2011E-20	34302	160511_QHF_FH_JSI11i_3	169.41	127.43			0.99146	0.95658	19.075	12	3	Median	1.2594	0.98837	16.771	5	2	Median	0.83498	0.94932	28.842	3	1	Plateau	1.066	1.0255	6.6534	2	0	Median	0.85862	0.86983	7.4483	2	0	Median	3598500000	1709800000	1888700000	1324500000	540680000	783850000	1026900000	563420000	463430000	722490000	337270000	385220000	524600000	268420000	256190000	4035	4806	3785	24854;24855;24856;24857;24858;24859;24860;24861;24862;24863;24864;24865	33889;33890;33891;33892;33893;33894;33895;33896;33897;33898;33899;33900;33901;33902;33903;33904;33905;33906;33907;33908	33891			20	
ANHFLILFR	0	Unmodified	1129.6396	0.63964859	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	75.023	66.267	2;3	1.2615E-11	36147	160513_QHF_FH_JSI11Kac_6	159.2	135.04			0.90545	0.99572	21.947	9	1	Median	1.3512	1.1575	9.9422	2	0	Median	0.81655	0.96699	13.486	2	0	Median	1.0567	0.99572	33.662	3	1	Median	0.82016	0.87236	14.819	2	0	Median	1865200000	943240000	922000000	196850000	82257000	114590000	1238300000	657660000	580670000	228000000	96238000	131770000	202060000	107090000	94967000	4036	5195	3786	24866;24867;24868;24869;24870;24871;24872;24873;24874	33909;33910;33911;33912;33913;33914;33915;33916;33917;33918;33919;33920;33921;33922	33911			14	
ANHGPGMAMNWPQFEEWSADLNR	0	Unmodified	2657.154	0.15397459	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		94.566	94.162	3	0.00087114	78926	160511_QHF_FH_JSI10i_3	44.953	42.073			0.93007	0.97833	12.796	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7702	0.8937	NaN	1	0	Median	1.1231	1.071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31121000	14114000	17008000	0	0	0	13068000	7398300	5669900	18053000	6715500	11338000	0	0	0	4037	5435	3787	24875;24876;24877	33923;33924;33925;33926	33926			4	
ANHPMDAEVTK	1	Unmodified	1211.5605	0.56047157	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.276	1	11								3	4	2	3	11.632	11.126	2;3	5.6015E-07	8442	160511_QHF_FH_JSI11i_2	113.93	92.463			0.98772	0.96693	45.756	10	4	Median	0.8641	0.74619	29.689	3	2	Median	0.95721	1.1642	54.223	3	0	Median	1.1131	1.1237	10.96	2	0	Median	0.84423	0.91682	66.954	2	2	Median	606220000	318970000	287240000	129200000	62154000	67048000	207230000	106810000	100420000	181830000	97292000	84537000	87951000	52719000	35232000	4038	726	3788	24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889	33927;33928;33929;33930;33931;33932;33933;33934;33935;33936;33937;33938;33939;33940;33941	33934			15	
ANIAVQR	0	Acetyl (Protein N-term)	812.45045	0.45045083	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	6.33	5.34	3			1	2						2	2	2	32.045	27.505	2	0.001507	12106	160513_QHF_FH_JSI11Kac_2	97.596	63.858			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4039	1936	3789	24890;24891;24892;24893;24894;24895	33942;33943;33944;33945;33946;33947	33943			6	
ANINIEK	1	Unmodified	800.43922	0.43921744	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	19.528	19.067	2	0.010911	16380	160511_QHF_FH_JSI10i_1	72.789	29.875			1.148	1.0818	33.138	5	0	Median	1.3378	1.0818	NaN	1	0	Median	1.148	1.3565	NaN	1	0	Median	0.92683	0.90837	57.476	2	0	Median	0.97949	1.0248	NaN	1	0	Median	1290500000	618320000	672130000	266610000	112110000	154500000	403620000	225550000	178070000	310410000	134560000	175840000	309820000	146100000	163720000	4040	1933	3790	24896;24897;24898;24899;24900	33948;33949;33950;33951;33952;33953;33954	33952			7	
ANINVENAFFTLAR	0	Unmodified	1578.8154	0.8154407	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.92	1	4	2						6	2	4	3	4	90.624	86.952	2	4.3495E-30	43450	160513_QHF_FH_JSI11Kac_6	163.99	131.49			0.36253	0.3905	60.056	11	10	Median	0.5316	0.44663	118.38	2	2	Median	0.24616	0.30272	50.643	3	3	Plateau	0.36253	0.36989	75.088	3	2	Median	0.30972	0.32695	47.443	3	3	Plateau	1756600000	1270800000	485760000	256830000	197390000	59438000	401410000	277570000	123840000	527670000	394650000	133020000	570650000	401190000	169460000	4041	1927	3791	24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913	33955;33956;33957;33958;33959;33960;33961;33962;33963;33964;33965;33966;33967;33968;33969;33970	33959			16	
ANIPIMDTGENPEVPFPR	0	Unmodified	1995.9724	0.97241163	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								2	3	2	1	86.037	85.569	2;3	6.5552E-09	77602	160511_QHF_FH_JSI10i_1	138.87	130.12			0.85296	0.86527	12.571	8	7	Median	1.1882	0.96934	8.4656	2	2	Median	0.66415	0.77568	7.3284	3	2	Median	0.85986	0.83793	12.039	2	2	Median	0.92033	0.94833	NaN	1	1	Median	295760000	156830000	138930000	65654000	31101000	34553000	90007000	52866000	37140000	87886000	48429000	39458000	52214000	24435000	27779000	4042	3926	3792	24914;24915;24916;24917;24918;24919;24920;24921	33971;33972;33973;33974;33975;33976;33977;33978	33974			8	
ANIQAVSLK	1	Unmodified	942.54983	0.54983053	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6		3					3			1	2	2	1	39.779	34.31	2	0.00019707	29242	160511_QHF_FH_JSI11i_2	102.62	51.918			0.94188	0.91724	16.463	6	3	Median	0.95389	0.81062	NaN	1	1	Median	0.66008	0.78996	13.227	2	1	Median	1.0742	1.0516	11.433	2	1	Median	0.93003	1.0044	NaN	1	0	Median	266690000	153970000	112710000	60626000	34491000	26134000	72347000	44100000	28246000	126720000	71401000	55315000	6997700	3982000	3015700	4043	348	3793	24922;24923;24924;24925;24926;24927	33979;33980;33981;33982;33983;33984;33985	33983			7	
ANITAIR	0	Unmodified	757.44464	0.44463717	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.46	3	4	2				1	4	1	3	5	4	3	23.455	19.419	2	0.0010716	17025	160511_QHF_FH_JSI10i_2	124.89	65.246			0.9382	0.97443	13.82	15	1	Median	1.2143	1.0326	2.1528	3	0	Plateau	0.79074	0.93033	17.913	5	0	Median	0.9761	0.96483	12.054	4	1	Median	0.88129	0.97443	19.393	3	0	Median	3117300000	1593200000	1524100000	464060000	183630000	280430000	777360000	434220000	343140000	1387800000	712420000	675350000	488110000	262950000	225160000	4044	1655	3794	24928;24929;24930;24931;24932;24933;24934;24935;24936;24937;24938;24939;24940;24941;24942	33986;33987;33988;33989;33990;33991;33992;33993;33994;33995;33996;33997;33998;33999;34000;34001	34000			16	
ANITFEYMFEEVPIVIK	1	Unmodified	2042.0435	0.043451304	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	2	1		100.87	99.375	2	1.1603E-96	52937	160513_QHF_FH_JSI10Kac_6	240.59	218.01			0.86609	0.89895	13.973	4	2	Median	0.91847	0.77645	NaN	1	1	Median	0.75019	0.89895	14.039	2	1	Median	1.0144	1.0259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	534800000	294940000	239850000	94433000	55015000	39418000	171800000	109930000	61870000	268570000	130000000	138570000	0	0	0	4045	283	3795	24943;24944;24945;24946	34002;34003;34004;34005	34005			4	
ANIVAYHDSIMNPDYNVEFFR	0	Oxidation (M)	2530.1587	0.15870885	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	78.11	77.977	3	2.6499E-15	69576	160511_QHF_FH_JSI11i_3	131.18	127.38			1.1937	1.1476	2.9714	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2287	1.1237	NaN	1	0	Median	1.1596	1.1719	NaN	1	0	Median	156020000	73620000	82402000	0	0	0	0	0	0	70304000	32612000	37692000	85718000	41008000	44710000	4046	5254	3796	24947;24948	34006;34007;34008;34009;34010	34007		2615	5	
ANIVAYHDSIMNPDYNVEFFR	0	Unmodified	2514.1638	0.16379422	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	3	3	86.451	84.747	2;3	1.4303E-57	77662	160511_QHF_FH_JSI11i_3	211.75	203.47			1.1125	1.15	10.433	9	0	Median	1.2253	1.047	13.27	2	0	Median	0.95367	1.1464	3.4651	2	0	Median	1.0863	1.0564	12.076	2	0	Median	1.1939	1.2507	12.454	3	0	Median	1578200000	735070000	843120000	183410000	81926000	101480000	236510000	117450000	119060000	646660000	287650000	359010000	511610000	248040000	263570000	4047	5254	3796	24949;24950;24951;24952;24953;24954;24955;24956;24957;24958	34011;34012;34013;34014;34015;34016;34017;34018;34019;34020;34021;34022;34023;34024;34025;34026;34027;34028;34029;34030;34031;34032	34012			22	
ANIVDQSHLHDSSQK	1	Unmodified	1677.8071	0.80706086	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0				By MS/MS	3	0			3										3	17.083	17.121	3;4	6.924E-12	13865	160511_QHF_FH_JSI12i_3	102.29	87.941			0.91432	0.88112	29.468	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91432	0.88112	29.468	2	1	Median	75870000	39160000	36710000	0	0	0	0	0	0	0	0	0	75870000	39160000	36710000	4048	4286	3797	24959;24960;24961	34033;34034;34035	34035			3	
ANIVHLMLSSPEQIQK	1	Oxidation (M)	1822.9611	0.96111866	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.41			5					1	4	3	2	2	3	63.546	57.961	2;3	7.0257E-08	51238	160511_QHF_FH_JSI11i_3	136.48	119.26			1.0115	1.0162	15.867	9	0	Median	1.2637	1.0546	21.454	3	0	Plateau	0.79344	0.90977	23.971	2	0	Median	1.0553	0.99196	3.4101	2	0	Median	1.0526	1.1058	3.1974	2	0	Median	739890000	377940000	361950000	137180000	62502000	74677000	166190000	95446000	70746000	210280000	108880000	101400000	226240000	111100000	115130000	4049	1844	3798	24962;24963;24964;24965;24966;24967;24968;24969;24970;24971	34036;34037;34038;34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055	34037		1517	20	
ANIVHLMLSSPEQIQK	1	Unmodified	1806.9662	0.96620404	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.31		5	9						7	6	6	5	4	72.61	69.177	2;3	7.7064E-17	60735	160511_QHF_FH_JSI12i_3	123.84	107.2			0.96779	0.9799	9.5316	20	1	Median	1.2139	0.97495	14.415	6	0	Median	0.79615	0.94985	3.6934	6	1	Median	1.1048	1.0572	7.8375	5	0	Median	0.94233	0.98657	5.4702	3	0	Plateau	8598100000	4320900000	4277200000	1311000000	583400000	727600000	1834900000	1046800000	788150000	2636600000	1271600000	1365000000	2815600000	1419100000	1396500000	4050	1844	3798	24972;24973;24974;24975;24976;24977;24978;24979;24980;24981;24982;24983;24984;24985;24986;24987;24988;24989;24990;24991;24992	34056;34057;34058;34059;34060;34061;34062;34063;34064;34065;34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087;34088;34089;34090;34091;34092;34093;34094;34095;34096;34097;34098;34099;34100;34101;34102;34103;34104;34105;34106;34107;34108;34109	34104			54	
ANKHQIK	2	Acetyl (K)	879.49265	0.49265	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.6	0.481								4	7	1	4	4	2	6.0688	-2.2291	2;3	0.00036243	1955	160513_QHF_FH_JSI11Kac_6	117.93	66.968			0.29181	0.28641	98.861	11	0	Median	0.34506	0.2958	NaN	1	0	Median	1.3188	1.5793	10.367	4	0	Median	0.26599	0.25863	14.93	4	0	Median	0.14409	0.15656	3.0727	2	0	Median	1207900000	855160000	352690000	4340500	3181600	1158800	252570000	106940000	145630000	867040000	673930000	193110000	83903000	71113000	12790000	4051	2017	3799	24993;24994;24995;24996;24997;24998;24999;25000;25001;25002;25003	34110;34111;34112;34113;34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126	34113	2047		17	
ANKITITNDK	2	Acetyl (K)	1158.6245	0.62445203	954;1108	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	1	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	12.6	0.49					2	3				1	2	1	1	33.893	23.352	2	4.3475E-08	16543	160513_QHF_FH_JSI12Kac_3	135.86	88.661			0.94684	0.96473	3.9666	5	0	Median	1.1508	0.93459	NaN	1	0	Median	0.79623	0.95581	1.467	2	0	Median	1.0022	0.96473	NaN	1	0	Median	0.94684	1.0353	NaN	1	0	Median	220820000	111340000	109470000	92511000	43461000	49050000	63073000	35104000	27970000	1792500	843890	948600	63439000	31935000	31504000	4052	954;1108	3800	25004;25005;25006;25007;25008	34127;34128;34129;34130	34129	716		4	
ANKLDHVVTIIK	2	Unmodified	1349.8031	0.8030851	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	4	1	3	43.055	41.942	2;3;4	9.3125E-09	34802	160511_QHF_FH_JSI12i_3	119.39	72.924			0.62849	0.6201	12.693	6	6	Median	0.77485	0.62619	5.5572	2	2	Median	0.61763	0.71638	16.234	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55532	0.57241	1.0298	2	2	Median	458220000	249960000	208260000	157120000	74057000	83059000	91770000	49754000	42016000	0	0	0	209340000	126150000	83186000	4053	4325	3801	25009;25010;25011;25012;25013;25014;25015;25016;25017;25018;25019	34131;34132;34133;34134;34135;34136;34137;34138;34139;34140;34141	34141			11	
ANKLDHVVTIIK	2	Acetyl (K)	1391.8136	0.81364979	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		73.052	62.818	3	0.00010381	33954	160513_QHF_FH_JSI11Kac_6	86.729	75.516			0.3465	0.33804	103.58	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6687	1.929	NaN	1	0	Median	0.32699	0.32145	7.1157	2	0	Median	NaN	NaN	NaN	0	0	Median	32522000	26312000	6210400	0	0	0	3212800	1338700	1874100	29309000	24973000	4336300	0	0	0	4054	4325	3801	25020;25021;25022	34142;34143;34144;34145	34142	3133		4	
ANKPGDVVR	1	Unmodified	954.52468	0.52467841	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	7.6331	7.4345	2	0.0052954	5099	160511_QHF_FH_JSI11i_3	74.376	56.991			0.74299	0.81949	14.979	5	0	Median	1.2565	1.0673	NaN	1	0	Median	0.67913	0.81949	NaN	1	0	Median	0.83374	0.80386	13.708	2	0	Median	0.74299	0.76272	NaN	1	0	Median	354360000	195050000	159310000	60697000	30024000	30673000	52343000	30043000	22300000	175620000	100660000	74961000	65700000	34325000	31375000	4055	1313	3802	25023;25024;25025;25026;25027	34146;34147;34148;34149;34150	34146			5	
ANLDDEQK	1	Unmodified	931.42469	0.42468959	5849				yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		6.2267	6.1155	2	0.012404	4138	160511_QHF_FH_JSI10i_1	52.683	15.038	+		0.88135	0.86869	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88135	0.86869	0	2	0	Median	NaN	NaN	NaN	0	0	Median	188540000	104330000	84205000	0	0	0	0	0	0	188540000	104330000	84205000	0	0	0	4056	5849	3803	25028;25029;25030	34151;34152;34153	34153			3	
ANLEAFTVDK	1	Unmodified	1106.5608	0.56078914	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	53.323	49.162	2	1.8285E-05	44706	160511_QHF_FH_JSI12i_1	110.38	92.996			0.96306	1.0131	14.85	9	6	Median	1.2909	1.0697	NaN	1	1	Median	0.73796	0.87503	12.353	3	2	Median	0.99563	0.97193	5.8731	2	1	Median	1.0341	1.107	9.531	3	2	Median	1127300000	584440000	542840000	199580000	95594000	103980000	291020000	158630000	132390000	286110000	151050000	135060000	350560000	179160000	171400000	4057	1400	3804	25031;25032;25033;25034;25035;25036;25037;25038;25039;25040;25041	34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167	34156			14	
ANLEKAK	2	Acetyl (K)	814.45487	0.45486751	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	16.457	9.1153	2	0.016687	6647	160513_QHF_FH_JSI10Kac_3	81.191	35.175			0.57815	0.63227	48.494	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0952	1.3038	NaN	1	0	Median	0.42732	0.42378	NaN	1	0	Median	0.57815	0.63227	21.86	2	0	Median	85852000	55756000	30096000	0	0	0	16276000	8984400	7291200	43698000	32730000	10968000	25879000	14042000	11837000	4058	1436	3805	25042;25043;25044;25045	34168;34169	34169	1394		2	
ANLGVFSVFAPR	0	Unmodified	1276.6928	0.69280637	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	2	1	1		90.93	87.141	2	0.0007012	42954	160513_QHF_FH_JSI9Kac_6	108.43	82.493			1.4941	1.3675	53.012	3	3	Plateau	3.2066	2.6094	NaN	1	1	Median	3.2642	3.9118	NaN	1	1	Median	1.4878	1.3675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	262690000	44813000	217870000	112230000	12525000	99706000	91248000	10901000	80347000	59209000	21387000	37822000	0	0	0	4059	28	3806	25046;25047;25048;25049	34170;34171;34172;34173	34173			4	
ANLHALIQMK	1	Unmodified	1137.6328	0.63284865	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			2						1	1	1	1		51.154	46.853	2;3	0.013502	38968	160511_QHF_FH_JSI10i_3	53.775	31.689			0.78533	0.63989	33.825	3	2	Median	0.78533	0.63989	NaN	1	0	Median	0.38896	0.47351	NaN	1	1	Median	0.9639	0.93016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49897000	25842000	24055000	37997000	17342000	20656000	6349100	5572600	776570	5551000	2928000	2623000	0	0	0	4060	3136	3807	25050;25051;25052	34174;34175;34176	34174			2	
ANLIVLGAVPR	0	Unmodified	1121.6921	0.69207809	3399	Q8IUR7	ARMC8	Armadillo repeat-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	4.69		1						4	2	2	1	2	2	76.481	67.829	2	6.5001E-08	33628	160513_QHF_FH_JSI10Kac_5	117.89	77.888			0.96149	0.99425	25.382	6	1	Median	1.2794	1.0988	15.322	2	0	Median	0.82305	1.0026	NaN	1	0	Median	1.1232	1.1168	NaN	1	0	Median	0.67505	0.72725	29.087	2	1	Median	88851000	44515000	44336000	38714000	15447000	23267000	6751400	4089000	2662500	17465000	8329700	9134900	25920000	16649000	9271200	4061	3399	3808	25053;25054;25055;25056;25057;25058;25059	34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187	34186			11	
ANLLEIAPHLSAPLPIMLPVYK	1	Unmodified	2399.3651	0.36506021	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	102.06	101.99	3	8.2531E-23	91153	160511_QHF_FH_JSI11i_3	158.73	150.93			1.0565	1.0811	16.587	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96867	0.94052	20.132	2	1	Median	1.0714	1.1376	7.6277	2	1	Median	772980000	366550000	406430000	0	0	0	0	0	0	429760000	200200000	229550000	343230000	166340000	176880000	4062	1558	3809	25060;25061;25062;25063	34188;34189;34190;34191;34192	34189			5	
ANLLNNEAHAITMQVTK	1	Unmodified	1866.9622	0.96218129	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	3	5	4	62.824	62.177	2;3	4.546E-33	54122	160511_QHF_FH_JSI11i_2	155.98	132.74			0.94394	0.92552	28.994	12	7	Median	1.0999	0.9267	13.815	2	2	Median	0.79977	0.98805	28.552	3	1	Median	0.9405	0.89241	41.328	3	1	Median	0.9215	0.92552	27.051	4	3	Median	5931300000	2934900000	2996500000	417810000	218990000	198820000	636110000	381410000	254710000	1671700000	722550000	949190000	3205700000	1611900000	1593800000	4063	1579	3810	25064;25065;25066;25067;25068;25069;25070;25071;25072;25073;25074;25075;25076;25077	34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207;34208;34209;34210;34211;34212;34213;34214	34205			22	
ANLLNNEAHAITMQVTK	1	Oxidation (M)	1882.9571	0.95709591	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			6									3	3	56.502	56.378	3	2.1983E-06	48119	160511_QHF_FH_JSI12i_3	108.71	84.523			0.79856	0.7753	35.393	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56846	0.52565	38.964	3	3	Plateau	0.79038	0.79223	40.167	3	3	Median	687970000	385270000	302690000	0	0	0	0	0	0	261610000	152770000	108850000	426360000	232510000	193850000	4064	1579	3810	25078;25079;25080;25081;25082;25083	34215;34216;34217;34218;34219;34220	34218		1237	6	
ANLMHMMK	1	Unmodified	974.45	0.4499986	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	30.78	30.051	3	0.0053409	25022	160511_QHF_FH_JSI12i_3	43.769	38.289			2.647	2.4518	51.484	2	1	Median	4.3487	3.5285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6112	1.7036	NaN	1	0	Median	88217000	26029000	62189000	29459000	5518300	23941000	0	0	0	0	0	0	58758000	20511000	38248000	4065	4255	3811	25084;25085	34221;34222	34222			2	
ANLPQSFQVDTSK	1	Unmodified	1433.7151	0.71505795	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.03	5.99	9	2	5		2	7	5	4		5	11	9	9	54.381	47.816	2;3	2.4778E-41	45057	160511_QHF_FH_JSI12i_1	208.56	182.9			1.0443	1.0536	19.396	27	6	Median	1.2013	1.0162	13.834	4	0	Median	0.8855	1.0454	21.453	10	4	Median	1.0885	1.0742	24.166	6	1	Median	0.98575	1.0482	16.92	7	1	Median	8244400000	3900300000	4344100000	2599400000	1178800000	1420600000	2119900000	1118500000	1001400000	1830000000	978440000	851530000	1695100000	624540000	1070500000	4066	1192	3812	25086;25087;25088;25089;25090;25091;25092;25093;25094;25095;25096;25097;25098;25099;25100;25101;25102;25103;25104;25105;25106;25107;25108;25109;25110;25111;25112;25113;25114;25115;25116;25117;25118;25119	34223;34224;34225;34226;34227;34228;34229;34230;34231;34232;34233;34234;34235;34236;34237;34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255;34256;34257;34258;34259;34260;34261;34262;34263;34264;34265;34266;34267;34268;34269	34230			47	
ANLQAALQVLELHHSK	1	Unmodified	1770.9741	0.97406661	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			73.96	72.506	4	0.011687	60772	160511_QHF_FH_JSI10i_3	36.127	29.236			0.79227	0.77741	5.1202	2	0	Median	0.97207	0.80607	NaN	1	0	Median	0.64573	0.74976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29036000	13858000	15178000	16647000	6657600	9988900	12389000	7200600	5188600	0	0	0	0	0	0	4067	4137	3813	25120;25121	34270;34271	34270			1	
ANLQIDQINTDLNLER	0	Unmodified	1868.9592	0.9592044	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								2	1	4	3	77.566	76.987	2;3	9.7443E-119	70139	160511_QHF_FH_JSI11i_1	247.14	207.35			1.1849	1.1595	23.234	9	7	Median	2.2254	1.8309	19.308	2	1	Median	0.90938	1.0773	NaN	1	1	Median	1.1034	1.0695	14.866	3	3	Plateau	1.0297	1.1036	11.968	3	2	Median	1556200000	723030000	833150000	192930000	70725000	122210000	408830000	202540000	206290000	445560000	216780000	228790000	508860000	232990000	275870000	4068	1436	3814	25122;25123;25124;25125;25126;25127;25128;25129;25130;25131	34272;34273;34274;34275;34276;34277;34278;34279;34280;34281;34282;34283	34275			12	
ANLQQAIVTPLKPVDNTYYK	2	Unmodified	2275.2212	0.22123275	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	71.228	70.743	3	1.3638E-18	61211	160511_QHF_FH_JSI12i_3	156.11	116.45			1.0781	1.1517	19.883	4	0	Median	0.94163	0.80442	NaN	1	0	Median	1.0087	1.249	NaN	1	0	Median	1.2117	1.1115	NaN	1	0	Median	1.1523	1.1933	NaN	1	0	Median	290860000	137370000	153490000	37552000	18294000	19257000	28328000	12951000	15377000	91061000	39362000	51699000	133920000	66763000	67154000	4069	5412	3815	25132;25133;25134;25135	34284;34285;34286;34287;34288;34289;34290;34291;34292;34293	34291			10	
ANLQYYA	0	Unmodified	841.39702	0.39701828	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.491	38.864	2	0.040678	34973	160511_QHF_FH_JSI11i_1	47.045	47.045			0.89819	0.94919	9.8873	4	0	Median	1.2945	1.0577	NaN	1	0	Median	0.77421	0.92302	NaN	1	0	Median	1.0057	0.97611	NaN	1	0	Median	0.80218	0.83595	NaN	1	0	Median	308030000	162000000	146030000	73864000	35792000	38072000	76904000	44707000	32197000	81923000	42062000	39861000	75334000	39434000	35900000	4070	1131	3816	25136;25137;25138;25139	34294;34295;34296;34297;34298;34299;34300	34295			7	
ANLSLLR	0	Unmodified	785.47594	0.4759373	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.75		5	4					1	2	3	2	4	3	43.394	40.658	2	0.00050644	34909	160511_QHF_FH_JSI11i_2	114.19	32.804			1.1475	1.0665	24.89	10	1	Median	1.1605	1.111	16.105	3	0	Plateau	0.89685	1.0623	14.258	2	0	Median	1.4163	1.4272	4.2624	3	1	Plateau	0.73653	0.77648	24.581	2	0	Median	5110500000	2374500000	2736000000	1188500000	457750000	730780000	1195300000	623340000	571960000	1262700000	511150000	751570000	1463900000	782250000	681640000	4071	1222	3817	25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151	34301;34302;34303;34304;34305;34306;34307;34308;34309;34310;34311;34312;34313;34314;34315;34316	34311			16	
ANLVFKEIEK	2	Acetyl (K)	1231.6812	0.68123863	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		1	2	2	2	74.724	64.129	2	0.00015654	34259	160513_QHF_FH_JSI11Kac_5	96.009	74.545			0.90726	1.0576	154.48	7	2	Median	0.73107	0.61906	NaN	1	0	Median	0.76695	0.89629	23.399	2	0	Median	1.1464	1.1316	373.2	2	2	Median	1.0683	1.174	4.8102	2	0	Median	94479000	52260000	42219000	7073600	2771300	4302300	24121000	14009000	10112000	32879000	18770000	14109000	30406000	16710000	13696000	4072	1207	3818	25152;25153;25154;25155;25156;25157;25158	34317;34318;34319;34320;34321;34322;34323;34324;34325;34326	34322	1079		10	
ANLVLLSGANEGK	1	Unmodified	1284.7038	0.70376498	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	4.49		6	6			1	2			4	4	3	4	57.399	53.776	2	8.7529E-06	47144	160511_QHF_FH_JSI9i_2	122.7	95.585			0.97177	1.1372	44.848	11	10	Median	1.4759	1.2629	64.348	3	2	Median	0.83089	0.9808	28.934	2	2	Median	0.86124	0.86514	46.281	2	2	Median	0.77847	0.86085	51.749	4	4	Median	692890000	390750000	302140000	116290000	53059000	63227000	80081000	46405000	33676000	200070000	120660000	79412000	296450000	170630000	125830000	4073	387	3819	25159;25160;25161;25162;25163;25164;25165;25166;25167;25168;25169;25170;25171;25172;25173	34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337;34338;34339;34340;34341;34342	34337			15	
ANMASSSQR	0	Unmodified	950.42398	0.42397808	1510	P41208	CETN2	Centrin-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	4.9395	4.4807	2	0.0024183	2477	160511_QHF_FH_JSI12i_1	65.246	40.615			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4074	1510	3820	25174;25175	34343;34344	34343			2	
ANMDGLK	1	Unmodified	747.35852	0.35852428	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.34	5					1	3			2	2	3	2	16.039	13.501	2	0.0038807	11151	160511_QHF_FH_JSI9i_1	101.64	46.202			0.96416	1.0514	53.712	7	3	Median	1.2157	1.0041	112.21	2	1	Median	0.7349	0.85917	28.552	2	0	Median	1.1178	1.0768	20.277	2	2	Median	1.6505	1.7557	NaN	1	0	Median	4346300000	1994700000	2351700000	1304200000	576070000	728170000	1100900000	653500000	447420000	1014600000	406940000	607640000	926570000	358140000	568430000	4075	1466	3821	25176;25177;25178;25179;25180;25181;25182;25183;25184	34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355	34352			11	
ANNDAVLK	1	Acetyl (Protein N-term)	885.4556	0.45559579	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						2	1	2	1	27.592	24.304	2	0.0023082	10300	160513_QHF_FH_JSI12Kacf_1	67.032	67.032			0.99423	1.0333	118.16	6	2	Median	2.1097	1.729	257.03	2	2	Median	0.98175	1.1406	NaN	1	0	Median	1.0627	1.0333	7.0566	2	0	Median	0.8852	0.94142	NaN	1	0	Median	578470000	250050000	328430000	237890000	88391000	149500000	168660000	80668000	87991000	167480000	78799000	88684000	4443000	2189600	2253400	4076	2323	3822	25185;25186;25187;25188;25189;25190	34356;34357;34358;34359;34360;34361;34362;34363;34364	34361			9	
ANNDAVLKR	1	Acetyl (K);Acetyl (Protein N-term)	1083.5673	0.5672715	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		41.268	32.357	2	0.012671	13367	160513_QHF_FH_JSI11Kac_1	44.203	34.216			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4077	2323	3823	25191	34365	34365	2415		1	
ANNIDYTVHSVR	0	Unmodified	1387.6844	0.68442653	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	26.489	26.173	2;3	2.3251E-05	22347	160511_QHF_FH_JSI11i_3	103.34	75.6			1.4684	1.4031	51.414	3	1	Median	NaN	NaN	NaN	0	0	Median	2.4903	3.0496	NaN	1	0	Median	1.4684	1.4031	NaN	1	1	Median	1.1483	1.1536	NaN	1	0	Median	218520000	97693000	120820000	0	0	0	58490000	26617000	31873000	81289000	33639000	47650000	78738000	37437000	41301000	4078	1316	3824	25192;25193;25194;25195;25196	34366;34367;34368;34369;34370	34367			5	
ANNLHSGDNFQLNDSEIER	0	Unmodified	2171.9832	0.98318732	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	2		1	45.744	44.991	3	2.8369E-05	39618	160511_QHF_FH_JSI10i_2	69.122	59.839			1.1077	1.3539	72.925	3	1	Plateau	1.3141	1.1251	NaN	1	0	Median	1.1077	1.3539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.35069	0.35258	NaN	1	1	Median	166270000	100870000	65401000	37474000	18344000	19130000	41919000	18688000	23231000	0	0	0	86878000	63838000	23039000	4079	4560	3825	25197;25198;25199;25200	34371;34372;34373;34374	34372			4	
ANNLSSLSK	1	Unmodified	932.49271	0.49270958	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.02	4	4	2				5	1		5	4	3	4	19.342	15.608	2	5.1108E-05	14880	160511_QHF_FH_JSI12i_1	98.033	66.959			1.035	1.048	38.949	16	6	Median	1.5127	1.2638	45.646	5	3	Median	0.75374	0.91804	21.309	4	1	Median	0.913	0.89774	12.933	3	0	Median	1.0387	1.1334	50.879	4	2	Median	3783300000	1953400000	1829800000	1069800000	428460000	641310000	930390000	523720000	406670000	806160000	462310000	343850000	976960000	538960000	438000000	4080	520	3826	25201;25202;25203;25204;25205;25206;25207;25208;25209;25210;25211;25212;25213;25214;25215;25216	34375;34376;34377;34378;34379;34380;34381;34382;34383;34384;34385;34386;34387;34388;34389	34377			14	
ANNMQEVSR	0	Unmodified	1047.4767	0.47674194	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		9.0545	8.6266	2	0.013522	6383	160511_QHF_FH_JSI11i_1	46.406	20.512			0.85999	0.77919	27.059	2	1	Median	1.1334	0.94349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65251	0.6435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	230730000	116850000	113880000	116710000	53235000	63474000	0	0	0	114020000	63613000	50406000	0	0	0	4081	4620	3827	25217;25218	34390;34391	34390			2	
ANNPEQNR	0	Unmodified	941.43151	0.4315063	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	3	2	4	0.97248	0.65678	2	0.00018357	530	160511_QHF_FH_JSI12i_1	121.99	107.83			0.68337	0.76346	21.452	12	0	Linear	1.4648	1.1881	7.5602	3	0	Plateau	0.63354	0.76366	25.537	3	0	Plateau	0.88981	0.86058	13.395	2	0	Median	0.90497	0.69673	17.971	4	0	Linear	803890000	414450000	389440000	49766000	20543000	29223000	260330000	141150000	119180000	159380000	79562000	79814000	334420000	173200000	161220000	4082	3213	3828	25219;25220;25221;25222;25223;25224;25225;25226;25227;25228;25229;25230	34392;34393;34394;34395;34396;34397;34398;34399;34400;34401;34402	34396			11	
ANNPEQNRLSECEEQAK	1	Unmodified	2015.8967	0.8966805	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	19.178	18.672	3	0.00029058	15290	160511_QHF_FH_JSI12i_3	62.378	34.882			1.3288	1.3962	21.402	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2312	1.5044	NaN	1	0	Median	1.2408	1.1656	12.536	2	1	Median	1.6008	1.6312	22.007	2	1	Median	120530000	45777000	74749000	9866300	0	9866300	32456000	15077000	17379000	36652000	16462000	20190000	41552000	14238000	27314000	4083	3213	3829	25231;25232;25233;25234;25235;25236;25237	34403;34404;34405;34406;34407;34408;34409;34410;34411	34411			9	
ANNSQEPSPQLASSVASTR	0	Unmodified	1942.9344	0.93444622	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	39.153	38.527	2	1.8429E-24	34573	160511_QHF_FH_JSI11i_1	214.53	198.99			1.0415	1.0175	2.1173	4	0	Median	1.2557	1.0262	NaN	1	0	Median	0.85312	0.9994	NaN	1	0	Median	1.1187	1.0488	NaN	1	0	Median	0.96964	1.009	NaN	1	0	Median	301720000	153070000	148650000	73929000	37371000	36558000	92846000	54430000	38416000	71191000	28861000	42331000	63754000	32411000	31343000	4084	4108	3830	25238;25239;25240;25241;25242	34412;34413;34414;34415;34416;34417;34418;34419;34420;34421;34422;34423	34413			12	
ANNYNEAVYLVR	0	Unmodified	1424.7048	0.70482762	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	1	2	61.261	50.484	2	0.0034367	28190	160513_QHF_FH_JSI12Kac_4	62.823	53.96			1.0086	1.0453	24.003	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1845	1.4354	NaN	1	0	Median	1.043	1.0475	NaN	1	0	Median	0.84623	0.91245	18.937	2	0	Median	12210000	5811600	6398400	0	0	0	2414200	1136400	1277800	3535000	1429400	2105600	6260800	3245800	3015000	4085	2284	3831	25243;25244;25245;25246	34424;34425;34426	34424			3	
ANPALYVLR	0	Unmodified	1015.5815	0.581465	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	58.04	54.373	2	8.2388E-06	48010	160511_QHF_FH_JSI11i_3	107.9	76.666			1.0045	0.96086	7.9851	12	1	Median	1.1221	0.95329	9.4349	3	0	Median	0.81232	0.97303	7.9649	3	0	Median	0.99833	0.95147	1.5112	3	1	Median	1.0175	1.064	12.547	3	0	Median	1823800000	912840000	910970000	249430000	114650000	134780000	315970000	167860000	148110000	632730000	319240000	313490000	625670000	311090000	314590000	4086	3101	3832	25247;25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258;25259	34427;34428;34429;34430;34431;34432;34433;34434;34435;34436;34437;34438;34439;34440;34441;34442;34443;34444;34445;34446;34447	34428			20	
ANPDLPILIR	0	Unmodified	1120.6604	0.66044361	356	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		71.402	71.112	2	0.011428	64366	160511_QHF_FH_JSI10i_1	53.493	44.581			0.95686	1.0203	2.9256	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83761	0.99945	NaN	1	0	Median	1.0931	1.0417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91339000	45517000	45822000	0	0	0	44326000	19421000	24905000	47014000	26096000	20917000	0	0	0	4087	356	3833	25260;25261	34448;34449;34450	34450			2	
ANPFFVLQR	0	Unmodified	1090.5924	0.59236404	3016	Q66K14	TBC1D9B	TBC1 domain family member 9B	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	3	0			3							1		1	1	70.854	70.26	2	0.0076494	57925	160511_QHF_FH_JSI9i_3	53.166	36.39			0.80894	0.76505	26.639	3	0	Plateau	1.5199	1.2617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80894	0.76505	NaN	1	0	Median	0.80885	0.83824	NaN	1	0	Median	73414000	34150000	39265000	23287000	8237900	15049000	0	0	0	25783000	12667000	13116000	24345000	13245000	11100000	4088	3016	3834	25262;25263;25264	34451	34451			1	
ANPFGGASHAK	1	Unmodified	1055.5148	0.514842	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.32		8	8					1	7	7	6	5	6	13.953	11.105	2;3	1.6276E-08	9250	160511_QHF_FH_JSI10i_3	108.56	99.701			0.89585	0.92735	23.301	24	1	Median	1.1052	0.94806	33.131	7	1	Median	0.83993	0.97725	4.7956	6	0	Median	1.014	1.019	8.1209	5	0	Median	0.69318	0.75469	16.2	6	0	Median	47868000000	22482000000	25387000000	7870300000	3178300000	4692000000	10040000000	4517100000	5522700000	13345000000	6855200000	6489700000	16613000000	7930900000	8682400000	4089	1992	3835	25265;25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278;25279;25280;25281;25282;25283;25284;25285;25286;25287;25288	34452;34453;34454;34455;34456;34457;34458;34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472;34473;34474;34475;34476;34477;34478;34479;34480;34481;34482;34483;34484;34485;34486;34487;34488;34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500;34501;34502	34461			51	
ANPFGGASHAKGIVLEK	2	Acetyl (K)	1736.921	0.9209684	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	67.787	58.062	3	0.0127	31592	160513_QHF_FH_JSI11Kac_6	54.764	46.984			0.30228	0.30791	18.347	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28112	0.27045	NaN	1	0	Median	0.32503	0.35056	NaN	1	0	Median	46203000	35091000	11112000	0	0	0	0	0	0	30416000	23596000	6819800	15787000	11494000	4292400	4090	1992	3836	25289;25290	34503	34503	2014		0	
ANPLAYGISHK	1	Unmodified	1169.6193	0.61930707	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		34.449	33.304	2;3	0.00026158	27177	160511_QHF_FH_JSI9i_3	55.261	47.26			0.82999	0.74688	40.324	5	2	Median	1.323	1.1013	54.924	2	1	Median	0.65737	0.75727	32.259	2	1	Median	0.65988	0.63637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172570000	92044000	80526000	50832000	22574000	28258000	57317000	36167000	21150000	64421000	33302000	31119000	0	0	0	4091	3516	3837	25291;25292;25293;25294;25295	34504;34505;34506	34505			3	
ANPQVGVAFPHIK	1	Unmodified	1376.7565	0.75646926	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	54.271	53.527	2;3	4.3007E-05	45814	160511_QHF_FH_JSI12i_3	144.65	125.67			0.90413	0.94438	22.166	10	0	Median	1.582	1.3345	21.799	2	0	Median	0.72821	0.8663	6.1116	2	0	Median	0.81828	0.77278	2.4789	3	0	Median	0.96701	1.0465	3.7911	3	0	Median	1252500000	638890000	613570000	138250000	57134000	81113000	186680000	110460000	76223000	444970000	240920000	204050000	482560000	230380000	252190000	4092	1024	3838	25296;25297;25298;25299;25300;25301;25302;25303;25304;25305	34507;34508;34509;34510;34511;34512;34513;34514;34515;34516;34517;34518;34519;34520	34518			11	
ANPTQLNTVEFLWDPAK	1	Unmodified	1942.9789	0.97887721	2308	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	96.085	95.789	2	0.041286	86922	160511_QHF_FH_JSI12i_1	43.991	29.115			0.64956	0.68817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64956	0.68817	NaN	1	1	Median	6763000	4661000	2102000	0	0	0	0	0	0	0	0	0	6763000	4661000	2102000	4093	2308	3839	25306	34521	34521			1	
ANQEQYAEGK	1	Unmodified	1136.5098	0.5098162	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.1321	7.7827	2	2.2608E-12	5487	160511_QHF_FH_JSI11i_1	155.06	140.39			0.81791	0.82354	18.436	4	0	Median	0.85284	0.68995	NaN	1	0	Median	0.73879	0.8758	NaN	1	0	Median	0.7844	0.77439	NaN	1	0	Median	0.9916	1.0618	NaN	1	0	Median	366130000	196890000	169240000	68721000	31705000	37016000	112070000	59783000	52287000	93566000	52491000	41075000	91777000	52910000	38867000	4094	5256	3840	25307;25308;25309;25310	34522;34523;34524;34525	34522			4	
ANQEVAVK	1	Unmodified	857.46068	0.46068117	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	8.7428	8.392	2	0.0064449	6315	160511_QHF_FH_JSI12i_1	70.856	32.723			0.87624	0.90604	5.1037	4	0	Median	1.0855	0.88768	NaN	1	0	Median	0.81221	0.94071	NaN	1	0	Median	0.94531	0.92477	NaN	1	0	Median	0.7911	0.83872	NaN	1	0	Median	807190000	442260000	364920000	222390000	111220000	111170000	206360000	117860000	88497000	172060000	85958000	86104000	206380000	127220000	79155000	4095	2432	3841	25311;25312;25313;25314	34526;34527	34526			2	
ANQHKEQQLGLK	2	Acetyl (K)	1434.7579	0.75792582	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		29.763	20.198	3	0.0002125	12528	160513_QHF_FH_JSI11Kac_5	81.565	48.508			0.27495	0.26641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27495	0.26641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6281200	4891300	1389900	0	0	0	0	0	0	6281200	4891300	1389900	0	0	0	4096	5261	3842	25315	34528	34528	3349		1	
ANQISPSNSSLK	1	Unmodified	1244.6361	0.63607935	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		19.827	19.188	2	0.027105	16230	160511_QHF_FH_JSI9i_1	48.284	29.19			0.9668	0.87911	53.966	2	2	Median	1.5155	1.2876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61675	0.60023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41457000	19253000	22203000	27721000	10432000	17289000	0	0	0	13736000	8821500	4914100	0	0	0	4097	3330	3843	25316;25317	34529;34530	34530			2	
ANQKHQGLK	2	Acetyl (K)	1064.5727	0.57269123	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	2	2	6.1793	-2.3941	2;3	0.00066458	2011	160513_QHF_FH_JSI11Kac_6	96.253	78.867			0.57862	0.66387	57.91	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1453	1.3643	NaN	1	0	Median	0.37896	0.38042	39.87	2	0	Median	0.6623	0.7419	15.717	2	0	Median	44053000	26747000	17306000	0	0	0	8195400	5142300	3053000	27530000	16914000	10616000	8327700	4690600	3637100	4098	2094	3844	25318;25319;25320;25321;25322;25323	34531;34532;34533;34534;34535	34531	2182		5	
ANQLAEEIESSAQYK	1	Unmodified	1679.8002	0.80024414	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		60.448	60.035	2	8.5954E-07	54392	160511_QHF_FH_JSI11i_1	141.37	117.38			0.97503	1.0385	32.515	2	2	Median	NaN	NaN	NaN	0	0	Median	0.70976	0.82521	NaN	1	1	Median	1.3394	1.307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94892000	45783000	49109000	0	0	0	41305000	26197000	15108000	53587000	19586000	34001000	0	0	0	4099	4302	3845	25324;25325	34536;34537	34536			2	
ANQQETEQFYFMK	1	Unmodified	1662.7348	0.73480712	3284	Q7Z6B7	SRGAP1	SLIT-ROBO Rho GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			58.812	58.418	2	0.0078261	52777	160511_QHF_FH_JSI10i_1	49.189	34.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4100	3284	3846	25326	34538	34538			1	
ANQQETEQFYFTK	1	Unmodified	1632.742	0.74200098	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	47.659	46.972	2	2.1267E-05	41789	160511_QHF_FH_JSI9i_1	121.02	97.17			0.75035	1.3056	30.553	3	2	Plateau	1.5565	1.3056	NaN	1	0	Median	0.71607	0.83517	NaN	1	1	Median	0.75035	0.72778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88104000	51491000	36613000	32997000	18959000	14038000	28957000	16669000	12287000	26150000	15862000	10288000	0	0	0	4101	467	3847	25327;25328;25329;25330;25331	34539;34540;34541;34542;34543;34544	34543			6	
ANQVLKFTK	2	Acetyl (K)	1089.6182	0.61824444	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	52.893	42.278	2	0.0030093	24626	160513_QHF_FH_JSI11Kac_4	81.338	58.598			0.53095	0.52876	29.244	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77402	0.94879	NaN	1	0	Median	0.53095	0.52876	NaN	1	0	Median	0.65965	0.718	NaN	1	0	Median	36369000	21322000	15047000	0	0	0	8573300	4877700	3695600	18882000	10980000	7902400	8913500	5465000	3448500	4102	2586	3848	25332;25333;25334	34545;34546;34547;34548	34547	2563		4	
ANQVNGNAVQLK	1	Acetyl (Protein N-term)	1296.6786	0.67861287	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		4.33	4.71	2			1						1	1	1		44.5	40.855	2	8.8228E-05	36237	160511_QHF_FH_JSI9i_1	38.754	31.823			0.52926	0.52311	95.335	2	1	Median	1.249	1.0265	NaN	1	0	Median	0.22427	0.26658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100230000	57854000	42379000	54387000	26590000	27797000	45043000	30460000	14582000	803290	803290	0	0	0	0	4103	326	3849	25335;25336;25337	34549;34550;34551	34550			3	
ANRFEYLLK	1	Unmodified	1152.6291	0.62914348	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			48.22	46.632	3	0.0043269	38144	160511_QHF_FH_JSI9i_3	50.194	32.682			0.83847	0.81922	10.146	2	0	Median	0.93519	0.76251	NaN	1	0	Median	0.75175	0.88015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166780000	91948000	74830000	90242000	46262000	43980000	76536000	45685000	30851000	0	0	0	0	0	0	4104	403	3850	25338;25339	34552	34552			1	
ANRGPAYGLSR	0	Acetyl (Protein N-term)	1202.6156	0.61561868	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.06	3	4	4				3	2	1	5	4	3	5	28.817	25.063	2	9.6211E-07	22403	160511_QHF_FH_JSI12i_1	117.02	87.549			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4105	1470	3851	25340;25341;25342;25343;25344;25345;25346;25347;25348;25349;25350;25351;25352;25353;25354;25355;25356	34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571;34572	34556			20	
ANSANTNTVPK	1	Acetyl (Protein N-term)	1157.5677	0.56766543	1777	P52655	GTF2A1	Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	19.101	18.604	2	2.1565E-07	15979	160511_QHF_FH_JSI12i_1	114.97	107.49			1.0679	1.1113	179.66	4	2	Median	11.947	10.226	NaN	1	1	Median	0.94047	1.0854	NaN	1	0	Median	1.2127	1.1377	NaN	1	0	Median	0.11714	0.12548	NaN	1	1	Median	228050000	106980000	121070000	32239000	4986500	27253000	84680000	37441000	47239000	71424000	29304000	42120000	39705000	35247000	4457500	4106	1777	3852	25357;25358;25359;25360;25361	34573;34574;34575;34576;34577;34578	34575			6	
ANSDDERPVASDNDDEK	1	Unmodified	1875.7719	0.77185714	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	9.1736	8.9269	3	1.1603E-05	6817	160511_QHF_FH_JSI12i_1	91.457	72.133			0.8172	0.81762	8.6228	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80834	0.76926	NaN	1	0	Median	0.82616	0.86902	NaN	1	0	Median	124790000	67264000	57527000	0	0	0	0	0	0	62382000	32365000	30017000	62408000	34899000	27510000	4107	3778	3853	25362;25363	34579;34580;34581;34582	34582			4	
ANSEEFIPIFANNPR	0	Unmodified	1717.8424	0.84238373	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	79.455	78.619	2	9.4279E-05	69077	160511_QHF_FH_JSI11i_2	107.18	100.52			1.3009	0.9624	21.576	3	0	Plateau	1.3638	1.1737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94879	0.9624	NaN	1	0	Median	1.3009	1.481	NaN	1	0	Median	40117000	21840000	18277000	11028000	6717800	4310500	0	0	0	19171000	10121000	9050100	9917200	5000800	4916300	4108	4668	3854	25364;25365;25366	34583;34584;34585	34585			3	
ANSEHNGPMDGQSGTETK	1	Unmodified	1858.7752	0.77516838	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	8.2726	7.9711	2;3	1.6728E-23	5565	160511_QHF_FH_JSI9i_1	136.33	123.7			1.0175	1.0283	13	7	1	Median	1.3025	1.0636	NaN	1	0	Median	0.75989	0.86688	21.772	2	1	Median	1.0315	1.0133	2.0847	2	0	Median	1.0189	1.0687	1.9374	2	0	Median	587580000	298790000	288790000	103420000	50928000	52491000	139980000	77495000	62486000	181900000	96230000	85675000	162280000	74142000	88135000	4109	723	3855	25367;25368;25369;25370;25371;25372;25373;25374	34586;34587;34588;34589;34590;34591;34592	34592			7	
ANSFTVSSVAAPSWLHR	0	Unmodified	1828.922	0.92203104	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	2	1	1	75.601	68.695	3	1.7294E-24	37737	160513_QHF_FH_JSI10Kac_6	157.47	141.83			1.1134	1.2658	22.505	5	1	Plateau	1.4235	1.226	NaN	1	0	Median	0.83173	1.0036	37.36	2	1	Median	1.2896	1.2247	NaN	1	0	Median	0.86632	0.93539	NaN	1	0	Median	407610000	187510000	220100000	69271000	24843000	44428000	262630000	129440000	133190000	48564000	19637000	28926000	27145000	13589000	13556000	4110	2147	3856	25375;25376;25377;25378;25379	34593;34594;34595;34596;34597;34598	34598			6	
ANSGLSMESIHVPDPVISIAMK	1	Unmodified	2295.1603	0.16028875	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	97.025	96.828	3	5.5524E-06	83438	160511_QHF_FH_JSI12i_2	64.749	50.135			0.89077	0.90591	20.643	5	2	Median	0.9313	0.78962	NaN	1	0	Median	0.74704	0.90591	NaN	1	1	Median	1.1547	1.1005	30.279	2	1	Median	0.8697	0.9702	NaN	1	0	Median	135870000	65717000	70154000	21884000	13566000	8318100	20879000	11568000	9311400	64282000	25937000	38346000	28825000	14646000	14179000	4111	4221	3857	25380;25381;25382;25383;25384	34599;34600;34601;34602;34603;34604;34605	34601			7	
ANSGLSMESIHVPDPVISIAMKPSNK	2	Unmodified	2721.383	0.38297148	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	87.88	87.825	3;4	0.00082216	78391	160511_QHF_FH_JSI11i_3	42.708	40.095			0.6531	0.63022	6.465	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64616	0.60206	NaN	1	1	Median	0.6601	0.6597	NaN	1	1	Median	55380000	33719000	21661000	0	0	0	0	0	0	12810000	9501100	3308600	42570000	24218000	18352000	4112	4221	3858	25385;25386	34606;34607	34606			2	
ANSLVMQPISQSQAEIRK	1	Unmodified	1999.0521	0.052058931	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			53.104	51.542	3	0.0072763	43086	160511_QHF_FH_JSI10i_3	43.534	27.942			0.56032	0.65958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56032	0.65958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16722000	12473000	4249600	0	0	0	16722000	12473000	4249600	0	0	0	0	0	0	4113	3236	3859	25387	34608	34608			1	
ANSMGLFLQK	1	Unmodified	1107.5747	0.57466507	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.737	56.489	2	0.0035313	48469	160511_QHF_FH_JSI12i_3	69.276	50.836			0.83507	0.84995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83507	0.84995	NaN	1	1	Median	118490000	54695000	63798000	0	0	0	0	0	0	0	0	0	118490000	54695000	63798000	4114	1469	3860	25388	34609	34609			1	
ANSNLVLQADR	0	Unmodified	1199.6258	0.62584901	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.68	4	4				2	2			3	3	3	3	32.602	29.498	2	5.0363E-07	26554	160511_QHF_FH_JSI12i_1	115.29	86.888			1.0009	0.98354	9.5058	11	1	Median	1.2084	1.0279	14.33	2	0	Median	0.83552	0.98354	6.6149	3	1	Median	1.0009	1.0827	6.6041	3	0	Plateau	0.89591	0.91682	16.057	3	0	Plateau	745370000	375270000	370100000	173410000	77129000	96281000	166530000	91146000	75387000	193960000	93804000	100150000	211460000	113190000	98274000	4115	552	3861	25389;25390;25391;25392;25393;25394;25395;25396;25397;25398;25399;25400	34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628	34613			19	
ANSPSLFGTEGKPK	2	Unmodified	1431.7358	0.73579339	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	30.545	30.123	2;3	9.464E-06	25290	160511_QHF_FH_JSI12i_3	101.42	93.697			1.0363	0.9674	30.978	5	0	Median	1.1333	0.9674	NaN	1	0	Median	0.58574	0.72792	NaN	1	0	Median	1.0363	0.96514	NaN	1	0	Median	1.3186	1.3619	31.713	2	0	Median	401710000	216170000	185530000	29869000	15338000	14531000	29800000	18861000	10939000	97100000	50058000	47042000	244940000	131920000	113020000	4116	3982	3862	25401;25402;25403;25404;25405	34629;34630;34631;34632;34633;34634;34635;34636	34635			8	
ANSSATETINK	1	Unmodified	1134.5517	0.55168102	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	3	2	11.204	7.0069	2	7.951E-13	7051	160511_QHF_FH_JSI12i_1	141.89	104.34			1.0224	0.98758	10.21	9	1	Median	1.1764	0.95843	NaN	1	0	Median	0.94438	1.1213	13.72	3	1	Plateau	1.0234	0.98917	6.863	3	0	Plateau	0.96229	1.0192	12.726	2	0	Median	1743800000	887210000	856600000	278260000	130820000	147440000	463450000	255740000	207710000	531910000	260470000	271440000	470190000	240180000	230010000	4117	1085	3863	25406;25407;25408;25409;25410;25411;25412;25413;25414	34637;34638;34639;34640;34641;34642;34643;34644;34645	34639			8	
ANSSVGKWQDR	1	Acetyl (K)	1288.616	0.61601261	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	33.484	24.292	2	9.0254E-11	14364	160513_QHF_FH_JSI10Kac_4	133.89	92.017			0.95527	1.1096	68.025	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.86131	1.0339	NaN	1	0	Median	3.783	3.7039	NaN	1	1	Median	1.1737	1.3006	NaN	1	0	Median	72281000	31161000	41119000	0	0	0	29136000	15997000	13139000	15564000	2504800	13059000	27581000	12660000	14921000	4118	3143	3864	25415;25416;25417	34646;34647;34648	34646	2780		2	
ANTFVAELK	1	Unmodified	991.53385	0.53384611	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.15	4	2	1			1	1	2		3	3	2	3	48.128	43.858	2	1.8181E-06	37382	160511_QHF_FH_JSI11i_2	129.85	92.293			0.82743	1.1879	65.808	11	4	Linear	1.3257	1.0784	100.98	3	1	Median	1.0031	1.1879	67.482	3	2	Plateau	1.0232	1.016	2.0423	2	0	Median	0.99583	1.082	46.964	3	1	Plateau	6023600000	2883100000	3140500000	542660000	199560000	343100000	994000000	472750000	521250000	2367700000	1212000000	1155700000	2119300000	998850000	1120400000	4119	1504	3865	25418;25419;25420;25421;25422;25423;25424;25425;25426;25427;25428	34649;34650;34651;34652;34653;34654;34655;34656;34657;34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669;34670;34671;34672;34673	34670			25	
ANTNEVLWAVVAAFTK	1	Unmodified	1732.9148	0.91482039	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.69		3	3						8	3	4	3	4	100.78	95.935	2;3	4.6238E-139	51521	160513_QHF_FH_JSI11Kac_6	324.81	290.11			1.0248	0.056194	62.432	14	1	Linear	1.0157	0.87019	12.394	3	0	Median	0.89518	1.0761	23.188	4	1	Median	0.88664	0.84075	19.114	3	0	Median	1.0568	1.1055	108.43	4	0	Median	4172800000	1994100000	2178700000	1028500000	523420000	505090000	879750000	473570000	406180000	1309000000	644970000	664040000	955580000	352140000	603440000	4120	4717	3866	25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441;25442	34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693	34679			20	
ANTSGDFEK	1	Unmodified	967.42469	0.42468959	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	1	3	11.183	8.004	2	0.00049275	7344	160511_QHF_FH_JSI10i_1	83.948	59.976			0.76545	0.78202	30.01	5	3	Median	0.74706	0.60733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97099	0.97593	NaN	1	0	Median	0.61096	0.60172	35.145	3	2	Plateau	845460000	522870000	322590000	389300000	227530000	161770000	0	0	0	6308800	2542700	3766100	449850000	292800000	157050000	4121	1685;31;191	3867	25443;25444;25445;25446;25447;25448	34694;34695;34696;34697;34698;34699	34696			6	
ANTTAFLTPLEIK	1	Unmodified	1417.7817	0.78168095	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	80.887	80.549	2	0.0061562	73453	160511_QHF_FH_JSI12i_1	74.698	50.847			0.71267	0.76642	16.142	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75354	0.85909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67402	0.68375	NaN	1	0	Median	39673000	21603000	18070000	0	0	0	21482000	11516000	9965600	0	0	0	18191000	10087000	8103900	4122	5664	3868	25449;25450	34700;34701	34700			0	
ANTVYGLGFASEQHLTQFAEK	1	Unmodified	2310.1281	0.12806065	4981	Q9NSC5	HOMER3	Homer protein homolog 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	77.373	77.285	3	2.3894E-46	67132	160511_QHF_FH_JSI12i_3	202.95	185.88			0.8735	0.88792	3.4902	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94405	0.88575	4.9318	2	2	Median	0.8735	0.88792	NaN	1	0	Median	256610000	139590000	117020000	0	0	0	0	0	0	155300000	85814000	69486000	101310000	53775000	47537000	4123	4981	3869	25451;25452;25453	34702;34703;34704;34705	34704			4	
ANVADTK	1	Acetyl (Protein N-term)	759.37628	0.37628284	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	1	0	0	By matching			By MS/MS	4.33	4.71	2			1						1			2	14.746	11.829	2	0.030802	5256	160513_QHF_FH_JSI12Kacf_1	36.395	23.358			1.0904	1.0233	10.941	3	0	Plateau	1.1333	0.94003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97021	1.0056	14.458	2	0	Median	192850000	88252000	104600000	76687000	33291000	43397000	0	0	0	0	0	0	116160000	54961000	61201000	4124	456	3870	25454;25455;25456	34706	34706			1	
ANVAKAEAEK	2	Acetyl (K)	1071.556	0.55603811	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					2	1	1	20.888	13.564	2	0.0062302	8607	160513_QHF_FH_JSI10Kac_3	73.985	26.787			0.87032	0.98671	55.089	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2528	1.4567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60462	0.66836	NaN	1	0	Median	7094200	5098700	1995600	0	0	0	3033300	1872100	1161200	1843400	1843400	0	2217500	1383200	834340	4125	1786	3871	25457;25458;25459;25460	34707;34708;34709;34710	34709	1797		4	
ANVAVVSGAPLQGQLVAR	0	Unmodified	1748.9897	0.98971667	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	3.65	6	4					1			2	3	4	2	65.959	65.277	2;3	3.6982E-16	59594	160511_QHF_FH_JSI12i_1	159.66	137.33			0.82146	0.86777	11.097	10	0	Median	1.1118	0.93424	7.6326	2	0	Median	0.71635	0.85302	10.897	3	0	Median	0.89692	0.87664	14.391	3	0	Median	0.82146	0.89177	9.9125	2	0	Median	503480000	252970000	250500000	81514000	39759000	41755000	140600000	70963000	69633000	191600000	95419000	96178000	89771000	46832000	42939000	4126	151	3872	25461;25462;25463;25464;25465;25466;25467;25468;25469;25470;25471	34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726	34715			15	
ANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIR	0	Unmodified	3719.9781	0.97811271	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			97.408	97.147	3	1.9887E-07	85865	160511_QHF_FH_JSI10i_2	46.082	41.273			0.92613	0.94756	8.3439	2	0	Median	1.1536	1.0051	NaN	1	0	Median	0.7435	0.89327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12630000	5787600	6842400	5081000	2026100	3054800	7549100	3761500	3787600	0	0	0	0	0	0	4127	151	3873	25472;25473	34727;34728;34729;34730;34731	34731			5	
ANVDISAPK	1	Unmodified	913.4869	0.48689592	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.982	25.37	2	4.1893E-05	15221	160513_QHF_FH_JSI11Kac_3	123.35	76.273			1.4281	1.3408	24.98	6	2	Median	1.811	1.4659	NaN	1	1	Median	1.2585	1.4803	43.763	2	1	Median	1.4611	1.4206	30.77	2	0	Median	1.1215	1.2264	NaN	1	0	Median	1200700000	462870000	737860000	404520000	143310000	261210000	390010000	161000000	229010000	399190000	154890000	244300000	7013400	3673300	3340100	4128	2286	3874	25474;25475;25476;25477;25478;25479;25480	34732;34733;34734;34735;34736;34737;34738;34739;34740;34741	34735			10	
ANVEAIMLAVMK	1	Unmodified	1288.6883	0.68831462	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	1	1	3	3	94.168	88.574	2	2.5893E-16	47752	160513_QHF_FH_JSI10Kac_6	145.55	110.11			1.0079	0.90629	24.654	6	3	Median	1.134	0.97742	NaN	1	1	Median	0.62641	0.74599	NaN	1	0	Median	1.0513	1.0193	27.301	2	1	Median	0.98809	1.0687	36.999	2	1	Median	873960000	457890000	416070000	111740000	52984000	58759000	211460000	136510000	74951000	305950000	139570000	166380000	244800000	128820000	115980000	4129	344	3875	25481;25482;25483;25484;25485;25486;25487;25488	34742;34743;34744;34745;34746;34747;34748;34749;34750;34751	34751			10	
ANVEAIMLAVMK	1	2 Oxidation (M)	1320.6781	0.67814386	344	O43592	XPOT	Exportin-T	yes	yes	0	0	2	0			By MS/MS		14	0							1					1		67.894	56.871	2	0.050178	31558	160513_QHF_FH_JSI11Kac_4	54.608	43.457			2.1049	2.0478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1049	2.0478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	830970	146980	683990	0	0	0	0	0	0	830970	146980	683990	0	0	0	4130	344	3875	25489	34752	34752			1	
ANVEEER	0	Unmodified	845.38791	0.38791015	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	5.6155	5.2916	2	0.026294	3015	160511_QHF_FH_JSI9i_1	54.157	14.054			1.2734	1.3016	11.261	4	0	Median	1.4608	1.2017	NaN	1	0	Median	1.2245	1.4648	NaN	1	0	Median	1.1892	1.17	NaN	1	0	Median	1.3242	1.4098	NaN	1	0	Median	449360000	205770000	243590000	100250000	44928000	55322000	124960000	56931000	68029000	115960000	51767000	64197000	108180000	52143000	56038000	4131	4033	3876	25490;25491;25492;25493	34753	34753			1	
ANVEKPVK	2	Acetyl (K)	925.52328	0.52328142	4793	Q9H8Y8;Q9BQQ3	GORASP2;GORASP1	Golgi reassembly-stacking protein 2;Golgi reassembly-stacking protein 1	yes	no	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		26.92	19.239	2	0.0078883	11893	160513_QHF_FH_JSI11Kac_3	78.334	54.906			0.68409	0.71964	118.48	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4314	1.6633	NaN	1	0	Median	0.32693	0.31136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6815200	4493200	2322000	0	0	0	2084500	816550	1267900	4730800	3676700	1054100	0	0	0	4132	4793	3877	25494;25495	34754	34754	3232		1	
ANVELDHATLVR	0	Unmodified	1336.7099	0.709913	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		39.662	38.84	2	1.0634E-05	33965	160511_QHF_FH_JSI9i_2	96.229	80.223			0.64807	0.72391	4.3125	3	3	Median	0.83675	0.72391	NaN	1	1	Median	0.59333	0.73008	NaN	1	1	Median	0.64807	0.67491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83007000	50874000	32133000	19523000	10669000	8854000	23688000	14776000	8912100	39796000	25429000	14367000	0	0	0	4133	5635	3878	25496;25497;25498;25499;25500	34755;34756;34757;34758;34759	34756			5	
ANVFFKNYEIK	2	Acetyl (K)	1413.7293	0.72925145	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.705	68.095	2	0.00088561	36178	160513_QHF_FH_JSI11Kac_5	85.958	60.299			0.29689	0.29269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29689	0.29269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5505800	4215800	1290000	0	0	0	0	0	0	5505800	4215800	1290000	0	0	0	4134	257	3879	25501	34760	34760	141;142		1	
ANVGAGK	1	Unmodified	615.33402	0.33402409	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.674	13	4	2							9	3	3	4	1.2467	0.8536	2	0.0068681	783	160511_QHF_FH_JSI9i_1	77.748	26.176			1.1474	1.2082	78.596	17	4	Median	1.0874	0.88845	47.529	8	1	Median	2.486	2.9564	48.9	3	1	Median	1.4687	1.502	93.772	3	1	Median	1.1386	1.2082	33.892	3	1	Plateau	3751700000	1541900000	2209700000	1053600000	521360000	532210000	688100000	150880000	537230000	1138100000	526740000	611350000	871920000	342970000	528950000	4135	2025	3880	25502;25503;25504;25505;25506;25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518;25519;25520	34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785;34786;34787;34788;34789;34790;34791;34792;34793;34794	34791			34	
ANVIHATVTSVTLHSTEGK	1	Unmodified	1964.0327	0.032703697	3597	Q8NBM8	PCYOX1L	Prenylcysteine oxidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	5	3	2	1	50.651	43.359	3;4	3.9453E-08	23748	160513_QHF_FH_JSI10Kac_6	100.67	87.216			0.91813	0.84021	36.948	8	3	Median	0.99309	0.8544	48.921	4	1	Median	0.64475	0.76313	26.086	2	1	Median	0.85746	0.84021	4.2948	2	1	Median	NaN	NaN	NaN	0	0	Median	150560000	79711000	70846000	60904000	23778000	37126000	62061000	40326000	21735000	27592000	15607000	11985000	0	0	0	4136	3597	3881	25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531	34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807	34805			13	
ANVKIFK	2	Acetyl (K)	860.51199	0.51198846	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	2	1	49.106	38.702	2	9.4597E-05	22916	160513_QHF_FH_JSI11Kac_4	124.34	71.706			0.37159	0.73491	39.418	6	0	Linear	0.779	0.66176	NaN	1	0	Median	0.75281	0.89001	12.252	2	0	Median	0.39784	0.39139	1.9287	2	0	Median	0.74679	0.81697	NaN	1	0	Median	153790000	105860000	47935000	6864000	3481000	3383000	36127000	21380000	14747000	97556000	72951000	24605000	13243000	8043100	5199600	4137	1503	3882	25532;25533;25534;25535;25536;25537	34808;34809;34810;34811;34812;34813	34810	1520		6	
ANVNEILDFFHGYR	0	Unmodified	1693.8213	0.82125436	3449	Q8IXT5	RBM12B	RNA-binding protein 12B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	97.927	97.936	3	4.8014E-06	87244	160511_QHF_FH_JSI11i_3	124.45	109.36			0.88589	0.85281	0.30576	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91848	0.85465	NaN	1	0	Median	0.85446	0.85096	NaN	1	0	Median	105900000	54044000	51861000	0	0	0	0	0	0	44982000	20878000	24104000	60923000	33166000	27757000	4138	3449	3883	25538;25539	34814;34815;34816	34815			3	
ANVTKPK	2	Unmodified	756.44939	0.4493882	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.9662	4.9662	2	0.046968	2640	160511_QHF_FH_JSI11i_3	89.55	46.55			1.4224	1.3389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4224	1.3389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1125800000	485570000	640250000	0	0	0	0	0	0	1125800000	485570000	640250000	0	0	0	4139	793	3884	25540	34817	34817			1	
ANVTKPK	2	Acetyl (K)	798.45995	0.45995289	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			17.42	10.001	2	0.03375	7086	160513_QHF_FH_JSI10Kac_3	67.981	33.157			1.0869	1.2873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0869	1.2873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11961000	5475600	6485800	0	0	0	11961000	5475600	6485800	0	0	0	0	0	0	4140	793	3884	25541	34818;34819	34819			2	
ANVTVLDTQIRK	1	Unmodified	1356.7725	0.77251325	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							2	3	4	2	39.645	39.02	2;3	1.0874E-05	34327	160511_QHF_FH_JSI9i_2	92.792	73.734			1.0226	0.99637	47.056	10	6	Median	1.1372	0.98868	10.739	2	0	Median	0.75126	0.93069	21.617	3	1	Median	1.6044	1.4595	55.611	4	4	Median	0.44478	0.43834	NaN	1	1	Median	966160000	482510000	483650000	122000000	61459000	60536000	213010000	110880000	102130000	504600000	223480000	281120000	126560000	86693000	39870000	4141	5161	3885	25542;25543;25544;25545;25546;25547;25548;25549;25550;25551;25552	34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833	34829			14	
ANVVALVAVAEHSGEFEK	1	Unmodified	1868.9632	0.96322715	2781	Q17R31	TATDN3	Putative deoxyribonuclease TATDN3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	82.352	82.247	3	1.3116E-07	73498	160511_QHF_FH_JSI11i_3	94.057	81.617			0.71975	0.70072	27.433	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90532	0.85072	NaN	1	0	Median	0.57222	0.57717	NaN	1	1	Median	158340000	91743000	66598000	0	0	0	0	0	0	74455000	38938000	35517000	83885000	52804000	31081000	4142	2781	3886	25553;25554;25555	34834;34835;34836	34835			3	
ANVVGNVWR	0	Unmodified	1013.5407	0.54066282	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		41.561	40.534	2	0.0010626	33837	160511_QHF_FH_JSI10i_3	70.69	53.132			1.0016	1.0007	14.693	3	0	Plateau	1.5561	1.2616	NaN	1	0	Median	0.92689	1.0947	NaN	1	0	Median	1.0016	0.94042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152090000	73814000	78271000	37090000	15990000	21100000	56306000	29348000	26958000	58689000	28476000	30212000	0	0	0	4143	2466	3887	25556;25557;25558	34837;34838;34839;34840;34841	34839			5	
ANWEAQQR	0	Unmodified	1001.4679	0.46789181	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.14		4	1				3	3		1	3	3	4	14.372	9.3613	2	6.8515E-05	8707	160511_QHF_FH_JSI12i_2	133.55	110.81			0.96348	1.0107	13.27	11	2	Median	1.1959	1.0107	NaN	1	0	Median	0.73501	0.8963	23.009	3	1	Median	1.0499	1.0358	11.106	3	0	Median	0.93466	1.0089	7.5944	4	1	Median	618180000	311670000	306510000	94370000	41290000	53080000	132660000	70191000	62465000	175550000	91430000	84122000	215600000	108760000	106840000	4144	2725	3888	25559;25560;25561;25562;25563;25564;25565;25566;25567;25568;25569	34842;34843;34844;34845;34846;34847;34848;34849;34850;34851	34843			10	
ANWYFLLAR	0	Unmodified	1152.608	0.60801411	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	2	2	3	87.46	82.49	2	1.0924E-32	42673	160513_QHF_FH_JSI11Kac_6	194.27	176.24			1.0102	1.0471	14.437	9	2	Median	1.3174	1.1548	13.846	2	0	Median	0.87942	0.96839	11.939	2	0	Median	1.0408	1.0032	7.1846	2	0	Median	1.0055	1.0299	19.571	3	2	Median	35537000000	16295000000	19242000000	5929200000	2294400000	3634700000	14532000000	6678400000	7853400000	6317800000	2762800000	3555000000	8757800000	4559300000	4198500000	4145	997	3889	25570;25571;25572;25573;25574;25575;25576;25577;25578	34852;34853;34854;34855;34856;34857;34858;34859;34860;34861;34862;34863;34864	34856			13	
ANYAVDAYFR	0	Unmodified	1188.5564	0.55637247	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		54.7	53.877	2	0.00041478	46731	160511_QHF_FH_JSI11i_2	75.294	68.399			1.0832	1.2429	17.536	3	1	Plateau	1.0832	0.91691	NaN	1	1	Median	1.0107	1.2418	NaN	1	0	Median	1.2399	1.2429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	197480000	98431000	99049000	52502000	28813000	23688000	72100000	36851000	35249000	72879000	32767000	40112000	0	0	0	4146	403	3890	25579;25580;25581;25582	34865;34866;34867	34866			3	
ANYDVLESQK	1	Unmodified	1165.5615	0.56151742	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	33.574	32.969	2	5.8711E-06	29134	160511_QHF_FH_JSI9i_1	108.47	81.166			1.1194	1.1006	6.5362	4	1	Median	1.2805	1.0604	NaN	1	0	Median	0.94452	1.1423	NaN	1	1	Median	1.0876	1.0567	NaN	1	0	Median	1.1521	1.2111	NaN	1	0	Median	983890000	438570000	545320000	194700000	76235000	118460000	288820000	145670000	143150000	297610000	116900000	180710000	202760000	99768000	102990000	4147	111	3891	25583;25584;25585;25586;25587	34868;34869;34870;34871;34872;34873;34874	34873			7	
ANYFFDAAK	1	Unmodified	1045.4869	0.48689592	5218	Q9P2L0	WDR35	WD repeat-containing protein 35	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	11.402	11.492	2	0.00075212	8744	160511_QHF_FH_JSI12i_3	79.597	52.995			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4148	5218	3892	25588	34875	34875			1	
ANYLASPPLVIAYAIAGTIR	0	Unmodified	2073.1623	0.16226131	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	99.435	90.889	2;3	2.4839E-57	49567	160513_QHF_FH_JSI12Kac_6	157.97	142.78			1.113	1.0509	6.624	9	0	Median	1.1593	0.99967	1.0224	2	0	Median	0.87019	1.041	8.333	2	0	Median	1.1208	1.0623	1.9163	2	0	Median	1.0972	1.1581	6.3783	3	0	Median	2072400000	1008200000	1064200000	477900000	224200000	253700000	411640000	221660000	189980000	585080000	269750000	315330000	597760000	292580000	305170000	4149	1194	3893	25589;25590;25591;25592;25593;25594;25595;25596;25597	34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886;34887;34888;34889;34890	34885			15	
ANYWWLR	0	Unmodified	1007.4977	0.49773538	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	73.899	65.145	2	3.5964E-11	35866	160513_QHF_FH_JSI10Kac_6	148.28	120.96			0.95071	1.1326	4.9894	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.95071	1.1356	NaN	1	0	Median	1.0757	1.029	NaN	1	1	Median	0.99441	1.0666	NaN	1	0	Median	922060000	459040000	463020000	0	0	0	700640000	353420000	347220000	82305000	36707000	45598000	139110000	68914000	70194000	4150	1381	3894	25598;25599;25600;25601;25602	34891;34892;34893;34894;34895;34896;34897	34897			7	
APAAHPEGQLK	1	Unmodified	1117.588	0.58800695	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	9.1856	8.8315	2;3	1.3333E-05	6493	160511_QHF_FH_JSI12i_2	106.6	82.644			0.99972	1.0505	10.174	10	0	Median	1.3529	1.1668	11.466	2	0	Median	0.83828	1.0237	0.37241	2	0	Median	1.11	1.1141	11.13	2	0	Median	0.96125	1.0266	10.899	4	0	Median	1493000000	748820000	744210000	213170000	96902000	116270000	284170000	159760000	124410000	451300000	204650000	246650000	544390000	287510000	256880000	4151	2195	3895	25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613	34898;34899;34900;34901;34902;34903;34904;34905;34906;34907;34908;34909;34910;34911;34912;34913;34914	34900			17	
APAAHPEGQLKFHPDTDDVPVPAPAGDQK	2	Acetyl (K)	3046.4785	0.47846308	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.457	60.993	4	0.00019301	32994	160513_QHF_FH_JSI11Kac_6	70.465	58.612			0.39699	0.38604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39699	0.38604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21518000	19143000	2375300	0	0	0	0	0	0	21518000	19143000	2375300	0	0	0	4152	2195	3896	25614	34915	34915	2314		1	
APAATSILHK	1	Unmodified	1007.5764	0.57637963	3952	Q969V6	MKL1	MKL/myocardin-like protein 1	yes	yes	0	0	0	0	By matching			By MS/MS	3	0			2							1			1	24.329	23.65	3	8.6244E-06	19457	160511_QHF_FH_JSI12i_3	82.417	70.551			1.3137	1.2002	16.698	2	0	Median	1.2808	1.0666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3474	1.3506	NaN	1	0	Median	140630000	73550000	67084000	35118000	15410000	19708000	0	0	0	0	0	0	105520000	58140000	47376000	4153	3952	3897	25615;25616	34916	34916			1	
APAEILNGK	1	Unmodified	911.50763	0.50763136	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								2	1		1	24.301	23.382	2	0.0028261	20304	160511_QHF_FH_JSI10i_1	62.546	36.72			0.78983	0.84608	148.28	3	0	Median	1.731	1.4518	205.02	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78983	0.84608	NaN	1	0	Median	587030000	261950000	325080000	177540000	23556000	153980000	0	0	0	0	0	0	409490000	238390000	171100000	4154	1004	3898	25617;25618;25619;25620	34917;34918;34919	34918			3	
APAHHPAAISTAK	1	Unmodified	1270.6782	0.67821894	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	3	3	6.5465	6.3271	2;3;4	3.7434E-05	3716	160511_QHF_FH_JSI12i_3	119.22	94.448			0.93287	0.88279	17.362	11	0	Median	1.2582	1.0194	13.644	3	0	Median	0.76489	0.8514	1.8394	2	0	Median	1.1579	1.0814	13.544	3	0	Median	0.7288	0.74783	11.113	3	0	Median	1472200000	737880000	734340000	238280000	93652000	144630000	161540000	98774000	62764000	407240000	186970000	220260000	665160000	358480000	306680000	4155	2904	3899	25621;25622;25623;25624;25625;25626;25627;25628;25629;25630;25631	34920;34921;34922;34923;34924;34925;34926;34927;34928;34929	34927			9	
APAKATNVVR	1	Acetyl (K)	1067.6087	0.60874239	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					1	1	2	50.062	40.774	2	0.0090244	22407	160513_QHF_FH_JSI11Kac_3	69.598	30.294			11.714	13.717	182.72	3	3	Median	NaN	NaN	NaN	0	0	Median	11.52	13.717	NaN	1	1	Median	11.714	11.391	NaN	1	1	Median	268.87	294.82	NaN	1	1	Median	40404000	558590	39846000	0	0	0	16808000	294490	16513000	9486100	193770	9292300	14110000	70324	14040000	4156	5134	3900	25632;25633;25634;25635	34930;34931;34932;34933	34930	3318		4	
APALGGSFAGLEPMGLLWALEPEK	1	Unmodified	2453.2665	0.26646838	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	no	no	0	0	0	0				By MS/MS	3	0			1										1	102.91	102.92	3	0.0046717	89690	160511_QHF_FH_JSI12i_3	35.179	27.375			1.2611	1.2135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2611	1.2135	NaN	1	1	Median	32550000	16875000	15675000	0	0	0	0	0	0	0	0	0	32550000	16875000	15675000	4157	3313	3901	25636	34934	34934			1	
APAMFNIR	0	Unmodified	918.47456	0.47455709	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							2	2	3	1	46.263	45.612	2	0.017546	40067	160511_QHF_FH_JSI9i_2	48.504	8.9613			0.96237	0.98525	4.6673	8	0	Median	1.2562	1.0425	6.5883	2	0	Median	0.85384	1.0062	1.4882	2	0	Median	0.99117	0.96898	0.87773	3	0	Median	0.90028	0.93608	NaN	1	0	Median	12718000000	6112700000	6605400000	4350400000	1935600000	2414800000	1953300000	1017500000	935790000	3613300000	1708100000	1905300000	2801000000	1451500000	1349500000	4158	1948	3902	25637;25638;25639;25640;25641;25642;25643;25644	34935;34936;34937;34938;34939;34940	34937			6	
APAMQPAEIQFAQR	0	Unmodified	1556.7769	0.7769467	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		54.045	53.634	3	0.0030006	48614	160511_QHF_FH_JSI11i_1	39.163	28.393			1.6494	1.5893	35.061	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6494	1.5893	35.061	2	2	Median	NaN	NaN	NaN	0	0	Median	67371000	19396000	47975000	0	0	0	0	0	0	67371000	19396000	47975000	0	0	0	4159	2561	3903	25645;25646	34941;34942	34941			2	
APAPEAEDEEVAR	0	Unmodified	1382.6314	0.6313879	3599	Q8NBN7	RDH13	Retinol dehydrogenase 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	20.407	19.975	2	0.0067075	17178	160511_QHF_FH_JSI10i_1	64.439	53.287			0.93913	0.91546	5.6978	5	4	Median	1.0374	0.84781	NaN	1	1	Median	0.79982	0.94818	NaN	1	0	Median	0.97922	0.94874	5.9049	2	2	Median	0.87327	0.91546	NaN	1	1	Median	370770000	187260000	183510000	73272000	35478000	37794000	62906000	31729000	31177000	157540000	79280000	78258000	77057000	40777000	36280000	4160	3599	3904	25647;25648;25649;25650;25651	34943;34944;34945;34946;34947	34946			5	
APAPKPELIAAEK	2	Unmodified	1333.7606	0.76055158	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	32.472	32.425	3	0.041528	27358	160511_QHF_FH_JSI12i_3	23.138	13.605			1.261	1.2357	4.9081	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2843	1.1935	NaN	1	0	Median	1.2381	1.2793	NaN	1	0	Median	305950000	150000000	155950000	0	0	0	0	0	0	100250000	44248000	56004000	205700000	105750000	99948000	4161	5664	3905	25652;25653	34948;34949	34949			2	
APASKPETAAPNDANGTAKPPFLSGENPFATVK	3	Unmodified	3294.6521	0.65207035	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		70.321	69.589	4	8.7881E-05	61877	160511_QHF_FH_JSI11i_3	41.661	37.434			0.83628	0.87625	1.4085	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7644	0.88502	NaN	1	0	Median	0.91491	0.86756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118410000	70039000	48371000	0	0	0	61572000	37926000	23647000	56838000	32114000	24724000	0	0	0	4162	5310	3906	25654;25655	34950;34951;34952;34953	34950			4	
APASSSSNPEEVQK	1	Unmodified	1429.6685	0.66850169	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.615	10.231	2	0.00020106	7855	160511_QHF_FH_JSI11i_1	109.24	93.97			0.98582	0.9711	11.289	4	0	Median	1.3037	1.057	NaN	1	0	Median	0.68127	0.81043	NaN	1	0	Median	1.0493	0.98855	NaN	1	0	Median	0.92615	0.95395	NaN	1	0	Median	268610000	143430000	125180000	82751000	44215000	38535000	60866000	37063000	23803000	66581000	32689000	33892000	58417000	29467000	28950000	4163	4505	3907	25656;25657;25658;25659	34954;34955;34956;34957;34958	34954			5	
APASVPETPTAVTAPHSSSWDTYYQPR	0	Unmodified	2915.3726	0.37260103	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65.727	65.165	3	0.0038339	56847	160511_QHF_FH_JSI11i_2	33.835	20.742			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4164	740	3908	25660	34959	34959			1	
APAVVAK	1	Unmodified	654.40646	0.40646075	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.894	31.629	2	0.027108	27656	160511_QHF_FH_JSI9i_1	56.255	18.053			0.040432	0.032676	NaN	1	1	Median	0.040432	0.032676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49383000	48034000	1349000	49383000	48034000	1349000	0	0	0	0	0	0	0	0	0	4165	3821	3909	25661	34960	34960			1	
APDDLVAPVVK	1	Unmodified	1122.6285	0.62847478	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		51.75	51.075	2	0.0020222	46111	160511_QHF_FH_JSI11i_1	73.985	65.122			0.94344	0.77005	5.9199	3	3	Plateau	0.9574	0.77005	NaN	1	1	Median	0.62368	0.7413	NaN	1	1	Median	0.85576	0.83258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	525810000	303380000	222430000	177280000	89554000	87724000	179340000	124770000	54576000	169190000	89061000	80134000	0	0	0	4166	308	3910	25662;25663;25664	34961;34962;34963	34961			3	
APDEETLIALLAHAK	1	Unmodified	1590.8617	0.86172219	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	4	1	94.702	94.306	3	2.2181E-15	83498	160511_QHF_FH_JSI10i_2	161.76	151.7			0.968	1.0041	18.888	9	2	Median	1.2887	1.0935	11.664	2	0	Median	0.84912	1.0044	4.6739	2	0	Median	0.97122	0.92856	23.713	4	2	Median	0.9013	1.0167	NaN	1	0	Median	724350000	366010000	358340000	135310000	62216000	73093000	158140000	82898000	75240000	279530000	136490000	143040000	151370000	84407000	66965000	4167	5593	3911	25665;25666;25667;25668;25669;25670;25671;25672;25673	34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991;34992;34993	34991			30	
APDELHYTYLDTFGRPVIVAYK	1	Unmodified	2567.306	0.30602501	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.82		9	4						4	4	3	5	5	83.693	81.363	3;4	1.3698E-16	39544	160513_QHF_FH_JSI9Kac_6	119.87	108.73			0.90027	0.87155	9.6236	17	3	Median	0.97484	0.83167	11.62	4	1	Median	0.75271	0.91102	6.2463	3	1	Plateau	0.92774	0.95078	12.365	5	0	Median	0.88761	0.91633	6.3733	5	1	Median	1607700000	873270000	734410000	339400000	179180000	160220000	440860000	272430000	168430000	446390000	224010000	222380000	381030000	197660000	183380000	4168	816	3912	25674;25675;25676;25677;25678;25679;25680;25681;25682;25683;25684;25685;25686;25687;25688;25689;25690	34994;34995;34996;34997;34998;34999;35000;35001;35002;35003;35004;35005;35006;35007;35008;35009;35010;35011;35012;35013;35014;35015;35016;35017;35018;35019;35020;35021;35022;35023	35019			30	
APDELHYTYLDTFGRPVIVAYKK	2	Unmodified	2695.401	0.40098803	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	1	2	2	2	77.388	76.05	4;5	1.9036E-09	68138	160511_QHF_FH_JSI11i_3	91.811	89.033			0.91779	0.85692	27.275	7	1	Median	0.96458	0.77188	NaN	1	1	Median	0.51371	0.60731	39.629	2	0	Median	0.95303	0.90279	7.3747	2	0	Median	0.95536	1.0035	2.1052	2	0	Median	834070000	500760000	333300000	24419000	15250000	9168100	255770000	186940000	68838000	433140000	238490000	194650000	120740000	60088000	60647000	4169	816	3913	25691;25692;25693;25694;25695;25696;25697	35024;35025;35026;35027;35028;35029;35030;35031;35032	35027			8	
APDELWNSLGPHPIPVIFK	1	Unmodified	2129.131	0.13096118	5248	Q9UBQ6	EXTL2	Exostosin-like 2;Processed exostosin-like 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	101.05	100.88	3	0.00067656	88587	160511_QHF_FH_JSI11i_2	54.764	45.501			1.0164	1.098	37.051	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83118	0.84495	NaN	1	1	Median	1.2429	1.4269	NaN	1	1	Median	181290000	103750000	77537000	0	0	0	0	0	0	126760000	73855000	52901000	54530000	29894000	24636000	4170	5248	3914	25698;25699	35033;35034	35034			2	
APDFLPLLNK	1	Unmodified	1126.6386	0.63864553	559	O75695	RP2	Protein XRP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	85.959	85.228	2	0.0038973	74938	160511_QHF_FH_JSI11i_2	67.897	45.157			0.39182	0.39564	27.321	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.35545	0.43358	NaN	1	1	Median	0.39182	0.39564	NaN	1	1	Median	0.57623	0.66038	NaN	1	1	Median	267450000	195060000	72388000	0	0	0	85559000	61596000	23962000	114660000	86220000	28438000	67235000	47248000	19987000	4171	559	3915	25700;25701;25702	35035;35036;35037	35036			3	
APDFVFYAPR	0	Unmodified	1181.5869	0.58694431	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.76	3	4	1					2	3	3	3	4	3	71.913	67.692	2	9.6179E-10	59960	160511_QHF_FH_JSI11i_2	136.75	116.98			1.0508	1.0391	7.5063	13	0	Median	1.1662	1.001	6.5285	3	0	Plateau	0.79491	0.97828	9.1982	3	0	Plateau	1.0567	1.0502	2.5781	4	0	Median	0.95108	1.0512	12.952	3	0	Median	2947500000	1483600000	1464000000	566850000	257790000	309060000	621810000	333610000	288200000	1058600000	526830000	531740000	700320000	365340000	334980000	4172	1073;1426;1270	3916	25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715	35038;35039;35040;35041;35042;35043;35044;35045;35046;35047;35048;35049;35050;35051;35052;35053;35054;35055;35056;35057	35051			20	
APDGQTVAGEVMGPQRPR	0	Unmodified	1864.9214	0.92137911	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		39.47	38.232	3	9.7542E-12	33592	160511_QHF_FH_JSI10i_2	114.28	106.76			1.3311	1.3219	21.568	2	2	Median	1.3954	1.1349	NaN	1	1	Median	1.2699	1.5397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	304960000	115720000	189250000	77302000	31792000	45510000	227660000	83924000	143740000	0	0	0	0	0	0	4173	2902	3917	25716;25717;25718;25719	35058;35059;35060;35061	35061			4	
APDLFPTDFK	1	Unmodified	1149.5706	0.57062555	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	71.519	70.991	2	0.002493	64602	160511_QHF_FH_JSI11i_1	67.563	51.921			1.033	0.91565	10.739	4	1	Linear	1.1639	0.95833	NaN	1	0	Median	0.76606	0.90862	NaN	1	0	Median	0.96741	0.91441	NaN	1	0	Median	1.1031	1.1428	NaN	1	1	Median	228350000	117010000	111340000	54199000	26856000	27343000	63146000	32729000	30417000	62875000	31839000	31036000	48130000	25582000	22547000	4174	2148	3918	25720;25721;25722;25723;25724	35062;35063;35064;35065	35062			4	
APDMSSSEEFPSFGAQVAPK	1	Unmodified	2080.9412	0.94117108	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	71.323	70.763	2;3	4.4492E-21	64408	160511_QHF_FH_JSI12i_1	192.65	170.45			1.0701	1.0362	19.988	8	3	Median	1.1305	0.92715	7.0618	2	0	Median	0.88226	1.0379	8.3251	2	1	Median	1.123	1.0971	NaN	1	0	Median	1.0582	1.1127	34.43	3	2	Median	1236300000	654990000	581320000	301340000	161960000	139380000	334040000	201530000	132520000	221270000	99738000	121530000	379660000	191770000	187890000	4175	2147	3919	25725;25726;25727;25728;25729;25730;25731;25732;25733;25734	35066;35067;35068;35069;35070;35071;35072;35073;35074;35075;35076;35077;35078;35079;35080;35081;35082	35072			17	
APDVDVNIAGPDAALK	1	Unmodified	1564.8097	0.80968662	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.955	64.341	2	2.9365E-10	58566	160511_QHF_FH_JSI12i_1	147.18	125.81			0.93808	0.85627	60.804	4	1	Median	1.0284	0.87164	NaN	1	1	Median	0.64109	0.76942	NaN	1	0	Median	0.85567	0.84117	NaN	1	0	Median	2.6589	2.7752	NaN	1	0	Median	363080000	182660000	180420000	64904000	30050000	34854000	127400000	81227000	46169000	94774000	49580000	45194000	76002000	21800000	54202000	4176	2286	3920	25735;25736;25737;25738	35083;35084;35085;35086;35087;35088;35089;35090;35091;35092	35087			10	
APDVEGQGLDWSLK	1	Unmodified	1513.7413	0.7412727	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	67.82	67.358	2	1.095E-05	61023	160511_QHF_FH_JSI11i_1	85.672	69.001			1.2368	1.3987	21.827	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3511	1.6322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1323	1.1987	NaN	1	0	Median	838220000	454630000	383580000	0	0	0	628690000	347350000	281340000	0	0	0	209530000	107290000	102240000	4177	2286	3921	25739;25740;25741	35093;35094;35095;35096;35097	35093			5	
APEAWDYGQGFVNEEMIR	0	Unmodified	2110.9418	0.94183978	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	84.675	84.42	2	4.1226E-08	76921	160511_QHF_FH_JSI11i_1	123.02	109.82			0.59726	0.61859	16.232	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61847	0.69382	NaN	1	1	Median	0.57677	0.55151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41426000	26062000	15363000	0	0	0	20394000	13125000	7269900	21031000	12938000	8093600	0	0	0	4178	764	3922	25742;25743;25744;25745	35098;35099;35100;35101;35102	35098			5	
APEDAGPQPGSYEIR	0	Unmodified	1585.7372	0.73724996	5692	Q9Y5Z4	HEBP2	Heme-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		36.372	36.064	2	0.0015132	32352	160511_QHF_FH_JSI11i_1	59.975	51.75			0.72135	0.77633	0.427	2	1	Median	NaN	NaN	NaN	0	0	Median	0.65122	0.77399	NaN	1	1	Median	0.79903	0.77868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114020000	60110000	53914000	0	0	0	60998000	34614000	26384000	53025000	25495000	27530000	0	0	0	4179	5692	3923	25746;25747	35103;35104	35103			2	
APEEPNIQVNPLGIPVNSK	1	Unmodified	2015.0688	0.068754852	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			78.663	77.791	2;3	1.6699E-05	70494	160511_QHF_FH_JSI10i_1	84.759	63.202			1.2268	1.0019	26.319	2	2	Median	1.2268	1.0019	26.319	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158470000	47544000	110920000	158470000	47544000	110920000	0	0	0	0	0	0	0	0	0	4180	1554	3924	25748;25749;25750	35105;35106;35107	35105			3	
APEIMLNSK	1	Unmodified	1001.5216	0.52156686	1309;1289	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	34.834	34.368	2	0.010803	30505	160511_QHF_FH_JSI10i_1	49.536	5.4192			0.90782	1.004	50.121	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2253	1.4311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67258	0.7044	NaN	1	1	Median	389740000	243440000	146310000	0	0	0	147990000	75073000	72914000	0	0	0	241760000	168360000	73393000	4181	1289;1309	3925	25751;25752	35108;35109;35110	35109			3	
APEPTDARK	1	Unmodified	983.50361	0.50360861	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	1	2	3	5.5827	5.2834	2;3	0.0076436	3109	160511_QHF_FH_JSI11i_2	39.848	28.212			1.1277	1.1466	19.712	8	0	Median	1.3186	1.1168	4.6288	2	0	Median	0.92395	1.1392	NaN	1	0	Median	1.1563	1.1542	2.3357	2	0	Median	1.1141	0.87495	33.285	3	0	Plateau	1103600000	558970000	544610000	277680000	119360000	158320000	82010000	42847000	39164000	367530000	182100000	185430000	376370000	214670000	161690000	4182	366	3926	25753;25754;25755;25756;25757;25758;25759;25760	35111;35112;35113;35114	35114			4	
APEPTPQQVAQQQ	0	Unmodified	1420.6947	0.69465686	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.5	4.33	3			1							2	1	1	30.358	29.949	2	0.0047318	26940	160511_QHF_FH_JSI12i_1	62.466	48.697			0.99374	1.1848	18.791	3	3	Median	NaN	NaN	NaN	0	0	Median	0.93416	1.1094	9.3035	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4427	1.5048	NaN	1	1	Median	182400000	75962000	106440000	0	0	0	106670000	50825000	55841000	0	0	0	75732000	25136000	50595000	4183	2578	3927	25761;25762;25763;25764	35115;35116;35117;35118	35115			4	
APEQEQAAPGPAAGGEAPK	1	Unmodified	1774.8486	0.84859132	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.04	8	1	1	5	3					2	6	6	4	24.666	20.754	2;3	1.9306E-67	17558	160511_QHF_FH_JSI9i_1	228.51	162.24			0.93784	1.0207	7.5011	17	0	Median	1.1935	0.96789	0.93827	2	0	Median	0.92072	1.0747	6.1895	6	0	Median	1.0521	1.0207	9.6267	5	0	Median	0.89289	0.97068	7.4111	4	0	Median	10980000000	5182800000	5797000000	2605100000	1085700000	1519400000	2849400000	1434100000	1415300000	2795300000	1283500000	1511800000	2730000000	1379500000	1350600000	4184	2101	3928	25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782	35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130;35131;35132;35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160;35161	35149			42	
APEQRPAPNAAPVDPTLR	0	Unmodified	1898.9963	0.99625861	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		35.236	35.236	3	0.009684	30797	160511_QHF_FH_JSI11i_3	40.179	30.122			0.82124	0.77575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82124	0.77575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43026000	22552000	20474000	0	0	0	0	0	0	43026000	22552000	20474000	0	0	0	4185	3090	3929	25783	35162	35162			1	
APESLFLLEEMRER	0	Unmodified	1718.8662	0.86615564	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	77.182	76.844	3	1.0278E-06	68577	160511_QHF_FH_JSI11i_3	113.76	95.3			1.1174	1.0605	14.431	3	1	Median	1.4004	1.2638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1174	1.0605	NaN	1	0	Median	1.0076	0.94927	NaN	1	0	Median	187870000	89209000	98657000	47837000	20361000	27476000	0	0	0	108610000	50481000	58127000	31421000	18367000	13054000	4186	2332	3930	25784;25785;25786	35163;35164;35165;35166	35164			4	
APEVNLNAPDVDVHGPDWNLK	1	Unmodified	2299.1233	0.12330962	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.663	5	4	1							1	3	2	4	77.365	76.802	3	2.914E-13	68181	160511_QHF_FH_JSI10i_2	120.23	105.14			0.93889	0.94619	18.325	9	2	Median	1.1215	0.95351	NaN	1	0	Median	0.75356	0.88288	20.902	3	1	Median	0.95287	0.95379	1.1325	2	0	Median	0.94369	1.0852	26.236	3	1	Plateau	798530000	427550000	370980000	95731000	52815000	42916000	265820000	154320000	111500000	206430000	98571000	107860000	230550000	121850000	108700000	4187	2286	3931	25787;25788;25789;25790;25791;25792;25793;25794;25795;25796	35167;35168;35169;35170;35171;35172;35173;35174;35175;35176;35177;35178;35179;35180;35181;35182;35183	35182			17	
APFAAHGYGAFLTLSILDR	0	Unmodified	2019.0578	0.057796236	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	89.632	81.704	2;3	2.6356E-138	46979	160513_QHF_FH_JSI10Kac_6	267.17	241.85			1.0658	0.97181	6.7875	6	1	Median	1.1211	0.95777	1.2466	2	0	Median	0.81166	0.97097	0.93344	2	1	Median	1.1845	1.1172	NaN	1	0	Median	1.023	1.0755	NaN	1	0	Median	2723200000	1462800000	1260400000	718450000	348250000	370200000	1779900000	1004700000	775200000	153340000	74989000	78351000	71507000	34906000	36600000	4188	1673	3932	25797;25798;25799;25800;25801;25802	35184;35185;35186;35187;35188;35189;35190	35189			6	
APFAAHGYGAFLTLSILDRYYTPTISR	0	Unmodified	3000.5498	0.54977753	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			91.416	85.695	3;4	2.1132E-08	48840	160513_QHF_FH_JSI10Kac_6	82.342	70.376			1.3498	1.6157	9.2063	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3498	1.6157	9.2063	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	462920000	194080000	268840000	0	0	0	462920000	194080000	268840000	0	0	0	0	0	0	4189	1673	3933	25803;25804	35191;35192	35191			2	
APFDLFENK	1	Unmodified	1079.5288	0.52876073	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	66.736	66.272	2	0.0024995	60093	160511_QHF_FH_JSI10i_1	64.42	40.465			1.0629	1.0126	25.695	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0112	1.1666	NaN	1	0	Median	1.0629	1.0126	NaN	1	0	Median	1.5875	1.6672	NaN	1	0	Median	352200000	177980000	174220000	0	0	0	120690000	69916000	50775000	154070000	80683000	73390000	77438000	27379000	50059000	4190	898	3934	25805;25806;25807;25808	35193;35194;35195;35196	35195			4	
APFDLFENKK	2	Unmodified	1207.6237	0.62372375	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	54.198	53.312	3	0.00051773	43797	160511_QHF_FH_JSI9i_3	58.676	55.144			0.94313	0.82737	17.912	6	0	Linear	1.5114	1.2546	20.347	2	0	Median	0.84311	1.0258	4.2854	2	0	Median	1.0258	0.95795	NaN	1	0	Median	0.85903	0.8507	NaN	1	0	Median	539390000	295990000	243400000	46551000	21025000	25526000	122460000	75123000	47339000	147130000	68514000	78618000	223240000	131330000	91915000	4191	898	3935	25809;25810;25811;25812;25813;25814	35197;35198;35199;35200;35201;35202;35203;35204	35200			8	
APFDLFENKK	2	Acetyl (K)	1249.6343	0.63428844	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	0	1			By MS/MS		15	0								1				1		78.298	67.688	2	0.019086	35923	160513_QHF_FH_JSI11Kac_5	64.04	36.027			0.22754	0.22674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22754	0.22674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22829000	18668000	4161100	0	0	0	0	0	0	22829000	18668000	4161100	0	0	0	4192	898	3935	25815	35205	35205	645		1	
APFDLFENR	0	Unmodified	1107.5349	0.53490874	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	67.026	66.377	2	0.00054075	57950	160511_QHF_FH_JSI11i_2	78.77	58.25			0.96111	0.9562	4.7382	6	0	Median	1.0783	0.93047	NaN	1	0	Median	0.74397	0.92213	NaN	1	0	Median	0.96985	0.95614	4.3633	2	0	Median	0.93995	1.0104	3.9352	2	0	Median	1545900000	802660000	743290000	189010000	94412000	94595000	285770000	158380000	127390000	632570000	322960000	309610000	438600000	226910000	211690000	4193	880	3936	25816;25817;25818;25819;25820;25821	35206;35207;35208;35209;35210;35211;35212	35210			7	
APFDLFENRK	1	Unmodified	1235.6299	0.62987176	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		54.594	53.554	3	0.00053177	43959	160511_QHF_FH_JSI9i_3	61.344	47.086			0.90676	0.85212	5.1597	3	0	Plateau	1.1496	0.93391	NaN	1	0	Median	0.75484	0.85619	NaN	1	0	Median	0.90676	0.85212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	419970000	213620000	206350000	97315000	51723000	45592000	108470000	60043000	48430000	214180000	101860000	112320000	0	0	0	4194	880	3937	25822;25823;25824	35213;35214;35215;35216;35217;35218	35218			6	
APGAEEYAQQDVLK	1	Unmodified	1517.7362	0.73618733	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			43.41	42.596	2	0.0094329	37822	160511_QHF_FH_JSI9i_1	58.674	33.015			0.52818	0.53254	10.978	2	2	Median	0.5795	0.49277	NaN	1	1	Median	0.48141	0.57553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95545000	61848000	33697000	31392000	19646000	11746000	64154000	42202000	21951000	0	0	0	0	0	0	4195	933	3938	25825;25826	35219;35220	35220			2	
APGAIGPYSQAVLVDR	0	Unmodified	1612.8573	0.85730551	1783	P52758	HRSP12	Ribonuclease UK114	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.8	3	1	1							1		2	2	62.355	61.765	2	0.00022778	53820	160511_QHF_FH_JSI11i_2	75.479	55.717			0.85227	0.81766	34.975	5	2	Median	0.85227	0.69761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1252	1.1196	44.45	2	0	Median	0.72556	0.7417	25.502	2	1	Median	523570000	281110000	242460000	105610000	58443000	47164000	0	0	0	239750000	115340000	124410000	178210000	107330000	70880000	4196	1783	3939	25827;25828;25829;25830;25831	35221;35222;35223;35224;35225	35224			5	
APGEQTVPALNLQNAFR	0	Unmodified	1824.9482	0.94824579	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	5	3	78.579	77.945	2;3	3.4023E-08	68793	160511_QHF_FH_JSI9i_2	129.38	117.77			1.0949	1.0822	5.4465	16	3	Median	1.256	1.056	3.1901	4	0	Median	0.90306	1.0866	8.8251	4	0	Median	1.1104	1.0763	4.0729	5	2	Median	1.0147	1.1011	4.0138	3	1	Median	1463500000	701520000	761980000	299630000	128870000	170760000	379770000	203550000	176220000	572110000	262730000	309390000	211980000	106380000	105610000	4197	5658	3940	25832;25833;25834;25835;25836;25837;25838;25839;25840;25841;25842;25843;25844;25845;25846;25847	35226;35227;35228;35229;35230;35231;35232;35233;35234;35235;35236;35237;35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249;35250	35243			24	
APGFAHLAGLDK	1	Unmodified	1195.635	0.63495714	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	49.527	48.674	2;3	4.5286E-05	41540	160511_QHF_FH_JSI12i_3	66.989	48.243			0.97424	1.0125	7.1731	8	0	Median	1.2839	1.0357	3.588	2	0	Median	0.90011	1.0376	1.9278	2	0	Median	1.012	0.96475	7.2056	2	0	Median	0.91516	0.93074	10.831	2	0	Median	2483900000	1255500000	1228300000	412660000	164530000	248130000	458500000	226420000	232080000	638880000	344740000	294140000	973820000	519830000	453980000	4198	497	3941	25848;25849;25850;25851;25852;25853;25854;25855	35251;35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265	35263			15	
APGFAQMLK	1	Unmodified	961.50552	0.50552287	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.831	3	3	4							2	3	3	2	52.222	51.461	2	0.0012211	43808	160511_QHF_FH_JSI12i_3	69.998	11.081			1.0236	1.0224	4.5129	9	0	Median	1.2082	0.98336	3.8734	2	0	Median	0.88666	1.0261	3.6122	3	0	Plateau	1.0471	1.0005	5.1544	2	0	Median	1.0034	1.0256	3.5354	2	0	Median	9999300000	5021200000	4978100000	1858000000	844560000	1013500000	2275400000	1217100000	1058300000	2173900000	1101000000	1072900000	3692000000	1858600000	1833400000	4199	1721	3942	25856;25857;25858;25859;25860;25861;25862;25863;25864;25865	35266;35267;35268;35269;35270;35271;35272;35273;35274;35275;35276;35277;35278;35279;35280;35281;35282;35283	35282			18	
APGFAQMLKEGAK	2	Acetyl (K)	1388.7122	0.71222118	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		75.569	66.233	2	0.0032547	36024	160513_QHF_FH_JSI11Kac_6	75.479	52.758			0.42961	0.40905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42961	0.40905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49743000	36346000	13397000	0	0	0	0	0	0	49743000	36346000	13397000	0	0	0	4200	1721	3943	25866;25867	35284;35285	35284	1729;1730		2	
APGFGDNRK	1	Unmodified	960.47773	0.47772821	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6.18	1	7	8					4	4	6	6	7	5	8.5057	5.4558	2;3	5.736E-05	5104	160511_QHF_FH_JSI9i_3	72.607	54.621			1.0582	1.0639	15.961	24	0	Median	1.267	1.103	18.838	6	0	Median	0.84745	1.0114	17.337	6	0	Median	1.1154	1.0552	17.854	7	0	Median	1.0289	1.0754	3.6535	5	0	Median	19886000000	9956200000	9929800000	8716200000	3963300000	4752900000	6211600000	3430100000	2781400000	4323400000	2230000000	2093400000	634800000	332770000	302030000	4201	980	3944	25868;25869;25870;25871;25872;25873;25874;25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888;25889;25890;25891	35286;35287;35288;35289;35290;35291;35292;35293;35294;35295;35296;35297;35298;35299;35300;35301;35302;35303;35304;35305;35306;35307;35308;35309;35310;35311;35312;35313;35314;35315;35316;35317;35318	35300			32	
APGFVYAWLELISHR	0	Unmodified	1757.9253	0.9253255	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.127	88.709	3	6.0144E-44	48143	160513_QHF_FH_JSI12Kac_6	179.39	155.91			1.0124	0.97561	6.9925	4	0	Median	1.1506	0.98409	NaN	1	0	Median	0.83344	0.96721	NaN	1	0	Median	1.1558	1.1086	NaN	1	0	Median	0.89072	0.94971	NaN	1	0	Median	524790000	264960000	259830000	154220000	77972000	76252000	192470000	102250000	90222000	112870000	49834000	63032000	65232000	34904000	30327000	4202	21	3945	25892;25893;25894;25895	35319;35320;35321;35322;35323	35322			5	
APGGLSLHDYK	1	Unmodified	1156.5877	0.58767259	1113	P17275	JUNB	Transcription factor jun-B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.518	29.464	3	0.027253	24745	160511_QHF_FH_JSI12i_3	26.412	18.683			1.0483	1.0574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0483	1.0574	NaN	1	0	Median	95198000	43212000	51986000	0	0	0	0	0	0	0	0	0	95198000	43212000	51986000	4203	1113	3946	25896	35324	35324			1	
APGIDDIK	1	Unmodified	827.43888	0.43888309	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.072	27.799	2	0.036415	24167	160511_QHF_FH_JSI9i_1	40.268	6.7178			1.1555	0.95996	NaN	1	0	Median	1.1555	0.95996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87726000	43783000	43943000	87726000	43783000	43943000	0	0	0	0	0	0	0	0	0	4204	4714	3947	25897	35325	35325			1	
APGIIPR	0	Unmodified	722.44391	0.44390889	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.898	2	1	3							1	1	1	3	25.16	24.394	2	0.03019	20156	160511_QHF_FH_JSI12i_3	52.231	9.4579			1.1854	0.88058	19.866	6	0	Linear	1.4789	1.1862	NaN	1	0	Median	0.90209	1.0308	NaN	1	0	Median	1.4793	1.4322	NaN	1	0	Median	0.95019	0.97354	26.673	3	0	Plateau	4108700000	1888600000	2220100000	629670000	242010000	387660000	860920000	446310000	414620000	281100000	116500000	164610000	2337000000	1083800000	1253200000	4205	1263	3948	25898;25899;25900;25901;25902;25903	35326;35327;35328;35329;35330	35330			5	
APGMEGTAALHGDSPARPQQAK	1	Unmodified	2189.0647	0.064748882	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			27.35	26.178	4	9.3577E-06	21569	160511_QHF_FH_JSI10i_3	60.032	55.582			1.2376	1.2609	12.14	2	1	Median	1.5587	1.374	NaN	1	1	Median	0.98262	1.1572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113780000	50780000	62996000	36752000	15792000	20960000	77025000	34988000	42036000	0	0	0	0	0	0	4206	681	3949	25904;25905	35331;35332;35333	35332			3	
APGMNTIDQGMAALK	1	Unmodified	1516.7378	0.737784	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.005	70.395	3	0.056436	61497	160511_QHF_FH_JSI11i_2	12.023	4.6147			1.0603	1.0693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0603	1.0693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79928000	40475000	39453000	0	0	0	0	0	0	79928000	40475000	39453000	0	0	0	4207	5654	3950	25906	35334	35334			1	
APGPLSK	1	Unmodified	668.38573	0.38572531	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	11.02	10.616	2	0.035999	8628	160511_QHF_FH_JSI12i_1	49.358	25.386			0.86419	0.92951	12.39	7	0	Median	1.228	1.039	4.3596	2	0	Median	0.78212	0.95246	3.4492	2	0	Median	0.90087	0.88953	3.6266	2	0	Median	0.71489	0.73005	NaN	1	0	Median	1401000000	726790000	674240000	339320000	156770000	182550000	373420000	214720000	158700000	513280000	256920000	256360000	175010000	98381000	76633000	4208	2380	3951	25907;25908;25909;25910;25911;25912;25913	35335;35336;35337	35336			3	
APGQHGGFVVTVK	1	Unmodified	1295.6986	0.69862003	5193	Q9P0W2	HMG20B	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	10.8	6.37			2						3		1	2	2	37.757	30.862	3	0.0010806	25119	160511_QHF_FH_JSI12i_3	54.598	39.059			0.79998	0.85489	10.255	4	1	Median	NaN	NaN	NaN	0	0	Median	0.80933	0.96958	NaN	1	0	Median	0.77462	0.7572	NaN	1	0	Median	0.79998	0.85489	3.1276	2	1	Median	161030000	97873000	63157000	0	0	0	7011900	4796900	2215000	6289200	3653400	2635800	147730000	89423000	58306000	4209	5193	3952	25914;25915;25916;25917;25918	35338;35339;35340;35341;35342	35340			5	
APGQLALFSVSDK	1	Unmodified	1331.7085	0.70851601	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	1	4	3				2	3		1	6	3	3	72.076	67.76	2	6.0138E-05	57330	160511_QHF_FH_JSI10i_3	127.17	127.17			0.80038	0.90246	11.008	11	3	Median	1.0617	0.90246	NaN	1	0	Median	0.79907	0.96407	4.8151	4	1	Linear	0.84221	0.85103	15.375	3	1	Median	0.90864	1.0029	17.317	3	1	Median	1523200000	813010000	710150000	167380000	58233000	109150000	243770000	137790000	105980000	517520000	305420000	212090000	594490000	311560000	282930000	4210	1381	3953	25919;25920;25921;25922;25923;25924;25925;25926;25927;25928;25929;25930;25931	35343;35344;35345;35346;35347;35348;35349;35350;35351	35344			9	
APGSAGHYELPWVEK	1	Unmodified	1639.7995	0.79945628	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.298	58.298	3	0.035386	51592	160511_QHF_FH_JSI11i_3	25.167	14.828			0.92715	0.90361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92715	0.90361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	565040000	306750000	258300000	0	0	0	0	0	0	565040000	306750000	258300000	0	0	0	4211	1429	3954	25932	35352	35352			1	
APGTNVAMASNQAVR	0	Unmodified	1485.7358	0.73581017	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		27.997	27.792	2	0.0028872	24622	160511_QHF_FH_JSI10i_1	57.434	21.49			1.0503	1.0207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0503	1.0207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125360000	59280000	66080000	0	0	0	0	0	0	125360000	59280000	66080000	0	0	0	4212	1685	3955	25933;25934	35353;35354	35354			2	
APGTPHSHTK	1	Unmodified	1031.5148	0.514842	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS		By MS/MS		14.1	4.55			1						6	6		1		1.6077	-4.4104	3	3.059E-05	338	160513_QHF_FH_JSI9Kac_6	91.549	77.343			1.6083	1.3194	45.381	7	1	Median	1.3937	1.1699	37.026	6	0	Median	NaN	NaN	NaN	0	0	Median	2.9214	2.7622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	148550000	53906000	94640000	42114000	17985000	24129000	0	0	0	106430000	35922000	70511000	0	0	0	4213	2250	3956	25935;25936;25937;25938;25939;25940;25941	35355;35356;35357;35358;35359;35360;35361	35359			7	
APGTPHSHTKPYVR	1	Acetyl (K)	1588.811	0.81102402	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									10		3	5	2	23.674	15.541	3;4	7.4783E-08	9550	160513_QHF_FH_JSI11Kac_6	113.35	92.762			0.24677	0.23433	110.78	10	3	Median	NaN	NaN	NaN	0	0	Median	1.4418	1.6632	170.68	3	1	Plateau	0.24006	0.22877	32.453	5	1	Median	0.13759	0.15091	124.47	2	1	Median	296100000	206840000	89267000	0	0	0	93950000	45197000	48753000	191650000	153260000	38384000	10507000	8377300	2129500	4214	2250	3957	25942;25943;25944;25945;25946;25947;25948;25949;25950;25951	35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372;35373	35365	2351		12	
APHALVMTFLFR	0	Unmodified	1401.7591	0.75911179	5729	Q9Y6I8	PXMP4	Peroxisomal membrane protein 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.63	77.037	3	2.355E-07	42681	160513_QHF_FH_JSI10Kac_6	92.866	74.121			0.58685	0.70848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58685	0.70848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21876000	13855000	8020700	0	0	0	21876000	13855000	8020700	0	0	0	0	0	0	4215	5729	3958	25952	35374	35374			1	
APHDFQFVQK	1	Unmodified	1215.6037	0.60365701	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.6	5.2			4						1			2	3	34.928	33	2;3	5.1811E-13	27703	160511_QHF_FH_JSI12i_3	135.86	121.85			0.85241	0.87885	32.386	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0399	0.98736	28.351	2	1	Median	0.84694	0.87885	40.918	3	0	Median	407690000	219050000	188640000	0	0	0	0	0	0	145300000	76537000	68766000	262390000	142520000	119870000	4216	3308	3959	25953;25954;25955;25956;25957	35375;35376;35377;35378;35379	35377			5	
APHLAYLR	0	Unmodified	939.52904	0.5290355	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	3	2	1	31.944	27.327	3	4.4482E-07	22082	160511_QHF_FH_JSI9i_3	131.04	88.037			0.96735	1.0445	20.165	9	1	Median	1.3369	1.1408	22.33	3	0	Median	0.89164	1.0445	28.98	3	1	Median	0.91561	0.86973	10.333	2	0	Median	0.97913	1.0716	NaN	1	0	Median	1074700000	536070000	538650000	509720000	240300000	269420000	389760000	207150000	182610000	164360000	82996000	81365000	10879000	5625000	5253900	4217	4496	3960	25958;25959;25960;25961;25962;25963;25964;25965;25966	35380;35381;35382;35383;35384;35385;35386	35384			7	
APHLQLIEGK	1	Unmodified	1104.6291	0.62914348	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	36.76	36.407	2;3	5.9893E-05	30888	160511_QHF_FH_JSI12i_3	80.24	73.637			1.301	1.2381	28.023	5	1	Median	NaN	NaN	NaN	0	0	Median	1.6878	1.9645	NaN	1	0	Median	1.2162	1.1396	11.267	2	0	Median	1.5226	1.5282	29.777	2	1	Median	445260000	193410000	251840000	0	0	0	45155000	18850000	26305000	112130000	61116000	51018000	287970000	113450000	174520000	4218	339	3961	25967;25968;25969;25970;25971	35387;35388;35389;35390;35391	35390			4	
APHLVGPHLGLETGNGGGVINLNAFDPTLPK	1	Unmodified	3104.6407	0.6407178	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	99.76	99.637	4	4.1242E-32	87716	160511_QHF_FH_JSI11i_3	119.36	108.25			0.96825	0.93557	26.747	6	3	Median	1.0377	0.84469	10.52	2	2	Median	0.64161	0.73502	52.304	2	1	Median	1.0347	0.96193	NaN	1	0	Median	0.97838	0.96422	NaN	1	0	Median	408590000	225180000	183410000	126740000	62941000	63799000	63184000	38667000	24517000	89221000	53815000	35406000	129440000	69758000	59686000	4219	4092	3962	25972;25973;25974;25975;25976;25977	35392;35393;35394;35395;35396;35397;35398;35399;35400;35401;35402;35403;35404;35405	35394			14	
APHQVPVQSEK	1	Unmodified	1218.6357	0.63568542	624	O94913	PCF11	Pre-mRNA cleavage complex 2 protein Pcf11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	9.1349	9.1999	2;3	3.3266E-05	6604	160511_QHF_FH_JSI12i_3	67.879	55.611			1.0245	0.89761	8.3235	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0321	0.96049	NaN	1	0	Median	0.95544	0.97454	11.711	2	1	Median	165070000	79723000	85344000	0	0	0	0	0	0	44986000	19799000	25187000	120080000	59924000	60157000	4220	624	3963	25978;25979;25980;25981	35406;35407;35408;35409	35407			3	
APHYPGIGPVDESGIPTAIR	0	Unmodified	2046.0534	0.053439139	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							1	2		1	68.11	67.443	3	1.6174E-05	58160	160511_QHF_FH_JSI12i_3	67.418	56.915			1.7986	1.2637	22.833	3	0	Plateau	1.41	1.2146	NaN	1	0	Median	1.0522	1.2637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7986	1.8372	NaN	1	0	Median	392760000	160930000	231830000	77344000	32851000	44493000	63320000	32859000	30462000	0	0	0	252100000	95224000	156870000	4221	616	3964	25982;25983;25984;25985	35410;35411;35412	35412			2	
APIDTPTQQLIQDIK	1	Unmodified	1679.9094	0.90940066	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14	0							2				1		1	80.326	69.799	2	0.0033038	36792	160513_QHF_FH_JSI10Kac_4	61.353	44.721			0.97585	1.0951	15.972	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82763	0.97816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1506	1.2261	NaN	1	0	Median	18807000	9769200	9037600	0	0	0	13544000	7359300	6184600	0	0	0	5262900	2409900	2853000	4222	4876	3965	25986;25987	35413;35414;35415	35413			3	
APIDTSDVEEK	1	Unmodified	1202.5667	0.56666238	2243	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		25.057	24.851	2	0.0071834	21711	160511_QHF_FH_JSI10i_1	51.268	30.366			1.0551	1.2138	27.207	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0551	1.2414	NaN	1	0	Median	0.98676	0.96459	32.498	2	2	Median	NaN	NaN	NaN	0	0	Median	304320000	164890000	139430000	0	0	0	93406000	50015000	43391000	210910000	114880000	96039000	0	0	0	4223	2243	3966	25988;25989;25990	35416;35417;35418;35419	35419			4	
APIHWTNVVK	1	Unmodified	1163.6451	0.64512789	2973	Q5THJ4	VPS13D	Vacuolar protein sorting-associated protein 13D	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			41.128	39.622	3	0.040843	33006	160511_QHF_FH_JSI10i_3	28.177	10.741			1.0264	1.1917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0264	1.1917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12404000	6224200	6180100	0	0	0	12404000	6224200	6180100	0	0	0	0	0	0	4224	2973	3967	25991	35420	35420			1	
APIIAVTR	0	Unmodified	839.52289	0.52288749	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.41	4	4	7				1	4	4	5	5	7	7	36.81	32.8	2	0.0012793	28246	160511_QHF_FH_JSI11i_3	91.626	45.256			0.91906	0.99772	19.074	24	2	Median	1.2007	1.0539	22.394	5	1	Median	0.87226	1.0156	4.5047	5	0	Median	0.95105	0.93853	19.085	7	0	Median	0.90764	0.95746	25.935	7	1	Median	52255000000	25944000000	26310000000	6908600000	3102300000	3806300000	11291000000	5830400000	5460800000	16807000000	7943000000	8863700000	17248000000	9068800000	8179300000	4225	1055	3968	25992;25993;25994;25995;25996;25997;25998;25999;26000;26001;26002;26003;26004;26005;26006;26007;26008;26009;26010;26011;26012;26013;26014;26015	35421;35422;35423;35424;35425;35426;35427;35428;35429;35430;35431;35432;35433;35434;35435;35436;35437;35438;35439;35440;35441;35442;35443;35444;35445;35446;35447;35448;35449;35450;35451;35452;35453;35454;35455;35456	35423			36	
APILIATDVASR	0	Unmodified	1225.703	0.7030367	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.26	4	4	4			2	4	5	1	6	8	6	4	60.677	54.507	2	4.7647E-25	30699	160513_QHF_FH_JSI10Kac_4	174.41	160.21			1.0042	1.0339	16.836	23	4	Median	1.2305	1.0081	19.051	6	1	Median	0.83734	0.99635	10.324	7	2	Median	1.0861	1.0667	24.082	6	1	Median	0.97305	1.0658	11.992	4	0	Median	8544600000	4424500000	4120100000	1597000000	746230000	850800000	2115100000	1195000000	920040000	3183100000	1647900000	1535200000	1649400000	835380000	814050000	4226	1128;3893	3969	26016;26017;26018;26019;26020;26021;26022;26023;26024;26025;26026;26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038;26039	35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467;35468;35469;35470;35471;35472;35473;35474;35475;35476;35477;35478;35479;35480;35481;35482;35483;35484;35485;35486;35487;35488;35489;35490;35491;35492;35493;35494;35495	35469			39	
APILLALVAGEAAGIMENISDDVIVGR	0	Unmodified	2706.4626	0.46260201	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.2	99.483	3	8.2509E-24	58932	160513_QHF_FH_JSI10Kac_6	171.5	158.57			0.63493	0.73924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63493	0.73924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80869000	59132000	21736000	0	0	0	80869000	59132000	21736000	0	0	0	0	0	0	4227	412	3970	26040	35496	35496			1	
APIPIELVVVVAATLASHFGK	1	Unmodified	2131.2405	0.24051163	1705	P50443	SLC26A2	Sulfate transporter	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									3	1		2		104.89	95.47	3	0.00049822	54574	160513_QHF_FH_JSI11Kac_6	91.725	79.011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3894100	0	3894100	0	0	0	0	0	0	3894100	0	3894100	0	0	0	4228	1705	3971	26041;26042;26043	35497;35498;35499	35497			3	
APIQDIWYHEDR	0	Unmodified	1541.7263	0.72629134	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	52.883	52.163	3	1.1265E-05	44433	160511_QHF_FH_JSI12i_3	87.18	79.314			1.1338	1.1594	10.846	7	1	Median	1.3638	1.1734	NaN	1	0	Median	0.86317	1.0575	19.806	2	0	Median	1.175	1.1145	5.5971	2	1	Median	1.0713	1.1388	13.834	2	0	Median	473130000	257740000	215390000	38652000	19320000	19333000	127000000	79356000	47640000	119340000	61937000	57405000	188140000	97126000	91014000	4229	5591	3972	26044;26045;26046;26047;26048;26049;26050	35500;35501;35502;35503;35504;35505;35506	35505			7	
APIQWEER	0	Unmodified	1027.5087	0.50869399	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	32.056	31.014	2;3	0.005013	2671	160511_QHF_FH_JSI12i_1	40.268	0			0.90096	0.771	NaN	1	0	Median	0.90096	0.771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176780000	101000000	75781000	176780000	101000000	75781000	0	0	0	0	0	0	0	0	0	4230	1698	3973	26051;26052	35507;35508	35507			2	
APIRPDIVNFVHTNLRK	1	Unmodified	1989.1272	0.1272132	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	2	By MS/MS				16	0									1	1				71.391	62.793	5	0.016366	33382	160513_QHF_FH_JSI9Kac_6	31.462	21.713			1.1533	0.99556	NaN	1	0	Median	1.1533	0.99556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34270000	14261000	20009000	34270000	14261000	20009000	0	0	0	0	0	0	0	0	0	4231	1457	3974	26053	35509	35509			1	
APIVTVGVNNDPADVR	0	Unmodified	1635.858	0.8580338	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	54.492	54.035	2	3.2965E-07	48643	160511_QHF_FH_JSI10i_1	151.13	119.63			0.79579	0.84303	9.1216	5	4	Median	NaN	NaN	NaN	0	0	Median	0.67389	0.7959	8.1352	2	2	Median	0.84207	0.81591	7.9941	2	2	Median	0.91657	0.9426	NaN	1	0	Median	489240000	270090000	219150000	0	0	0	223050000	131420000	91633000	194250000	98868000	95381000	71939000	39806000	32132000	4232	4337	3975	26054;26055;26056;26057;26058	35510;35511;35512;35513;35514;35515	35515			6	
APKPDGPGGGPGGSHMGGNYGDDR	1	Unmodified	2251.9665	0.9664914	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.62	0.487		5	8							7	4	2		19.105	18.234	3;4	2.0675E-51	14529	160511_QHF_FH_JSI9i_3	201.58	189.27			0.92022	0.82551	19.156	13	1	Median	0.96537	0.82551	20.958	7	1	Median	0.67198	0.78639	11.497	4	0	Median	1.1119	1.062	5.3283	2	0	Median	NaN	NaN	NaN	0	0	Median	2738900000	1458300000	1280600000	1547200000	747850000	799330000	875740000	538480000	337260000	316010000	172000000	144010000	0	0	0	4233	1442	3977	26059;26060;26061;26062;26063;26064;26065;26066;26067;26068;26069;26070;26071	35516;35517;35518;35519;35520;35521;35522;35523;35524;35525;35526;35527;35528;35529;35530;35531;35532;35533;35534;35535;35536;35537;35538;35539;35540;35541;35542;35543;35544;35545;35546;35547;35548;35549;35550;35551;35552;35553	35535			38	
APKPDGPGGGPGGSHMGGNYGDDR	1	Oxidation (M)	2267.9614	0.96140602	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		2.93	0.258		1	13							7	4	3		16.522	15.72	3;4	3.5924E-12	9617	160511_QHF_FH_JSI9i_3	99.387	94.734			0.9404	0.88193	40.428	13	0	Median	1.0647	0.86884	59.096	6	0	Median	0.73368	0.84858	17.755	4	0	Median	0.9404	0.879	7.9972	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1018200000	533740000	484500000	646790000	324870000	321930000	285630000	167490000	118140000	85820000	41381000	44439000	0	0	0	4234	1442	3977	26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082;26083;26084;26085	35554;35555;35556;35557;35558;35559;35560;35561;35562;35563;35564;35565;35566;35567;35568	35561		1118	15	
APKPEDIDEEDDDVPDLVENFDEASK	2	Unmodified	2930.2829	0.28290212	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	82.351	81.917	3	1.9325E-06	74613	160511_QHF_FH_JSI11i_1	61.801	58.532			1.7056	1.7248	7.9548	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6732	1.6305	NaN	1	1	Median	1.7386	1.8246	NaN	1	1	Median	34490000	8536900	25953000	0	0	0	0	0	0	13967000	4061700	9904800	20523000	4475100	16048000	4235	4146	3978	26086;26087	35569;35570	35569			2	
APLATGEDDDDEVPDLVENFDEASK	1	Unmodified	2690.1719	0.17189511	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	10										6	2	2	89.467	89.204	3	2.2492E-09	81251	160511_QHF_FH_JSI10i_1	79.762	75.78			0.97161	1.0663	14.615	6	1	Median	NaN	NaN	NaN	0	0	Median	0.97161	1.1055	7.2187	3	1	Plateau	1.126	1.0799	NaN	1	0	Median	0.92971	0.92788	26.039	2	0	Median	157170000	78976000	78191000	0	0	0	85159000	42491000	42667000	31585000	18018000	13567000	40424000	18467000	21957000	4236	1172	3979	26088;26089;26090;26091;26092;26093;26094;26095;26096;26097	35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581;35582	35577			12	
APLATLALLWYHTVVRPFFALDGSDNK	1	Unmodified	3014.6018	0.6018131	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	100.01	91.427	3;4	7.5921E-34	52341	160513_QHF_FH_JSI9Kac_6	141.5	135.14			0.87627	0.89717	18.52	5	0	Median	0.89316	0.76328	22.857	2	0	Median	0.85964	1.0144	NaN	1	0	Median	0.87627	0.8417	NaN	1	0	Median	0.97424	1.0226	NaN	1	0	Median	2813700000	1420500000	1393200000	842050000	401140000	440900000	1228700000	622710000	605980000	534520000	286100000	248420000	208450000	110590000	97865000	4237	3539	3980	26098;26099;26100;26101;26102	35583;35584;35585;35586;35587;35588;35589;35590;35591;35592	35585			10	
APLDIPIPDPPPKDDEMETDK	2	Unmodified	2332.1144	0.114444	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.581	73.078	3	0.00023525	64811	160511_QHF_FH_JSI9i_1	54.271	45.776			0.91391	0.77822	14.135	4	1	Linear	0.98449	0.79185	NaN	1	0	Median	0.63287	0.74948	NaN	1	0	Median	0.84839	0.82779	NaN	1	0	Median	1.0128	1.0344	NaN	1	1	Median	236280000	121510000	114770000	59551000	28274000	31277000	61841000	33509000	28332000	58010000	34781000	23229000	56876000	24948000	31928000	4238	5391	3981	26103;26104;26105;26106	35593;35594;35595;35596;35597;35598;35599;35600;35601;35602;35603;35604;35605	35602			13	
APLDIPVPDPVK	1	Unmodified	1259.7125	0.71253876	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.49	8	1				4				2	4	4	3	77.539	75.058	2;3	2.7182E-07	69166	160511_QHF_FH_JSI11i_1	129.7	90.554			0.99754	1.0072	8.4234	11	0	Median	1.2228	0.99961	8.8031	2	0	Median	0.79237	0.93501	4.8239	3	0	Median	0.99754	0.95608	4.2641	3	0	Median	1.0083	1.0579	10.47	3	0	Median	2712400000	1321000000	1391400000	618730000	267600000	351120000	707170000	379810000	327360000	728420000	339080000	389330000	658120000	334500000	323610000	4239	2244	3982	26107;26108;26109;26110;26111;26112;26113;26114;26115;26116;26117;26118;26119	35606;35607;35608;35609;35610;35611;35612;35613;35614;35615;35616;35617;35618;35619;35620;35621;35622;35623;35624;35625;35626;35627;35628;35629;35630;35631;35632;35633;35634	35608			29	
APLEVAQEH	0	Unmodified	992.49271	0.49270958	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		20.585	20.067	2	0.0032628	16962	160511_QHF_FH_JSI9i_1	61.09	45.709			0.76561	0.79356	8.7323	3	0	Plateau	0.96961	0.79356	NaN	1	0	Median	0.64847	0.75236	NaN	1	0	Median	0.90392	0.89239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	266930000	141450000	125480000	69955000	33287000	36668000	103440000	58170000	45270000	93535000	49993000	43542000	0	0	0	4240	621	3983	26120;26121;26122	35635;35636	35636			2	
APLEVPQALGR	0	Unmodified	1149.6506	0.6506072	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.4	0.49	3	2								2	1	2		53.479	52.766	2	0.051434	46287	160511_QHF_FH_JSI9i_2	35.438	22.401			0.89958	0.90736	16.027	5	0	Median	1.0334	0.88489	16.523	2	0	Median	0.69727	0.84386	NaN	1	0	Median	1.0542	1.0389	19.146	2	0	Median	NaN	NaN	NaN	0	0	Median	235660000	122590000	113070000	63796000	34482000	29314000	65331000	38391000	26940000	106540000	49719000	56817000	0	0	0	4241	3146	3984	26123;26124;26125;26126;26127	35637	35637			1	
APLKPYPVSPSDK	2	Unmodified	1397.7555	0.7554662	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.34		4	8					2		4	5	2	3	31.444	29.363	2;3	4.8804E-05	25158	160511_QHF_FH_JSI11i_3	89.507	75.249			0.85706	0.95548	15.315	14	2	Median	1.2073	1.0268	23.637	4	1	Median	0.83001	0.96877	12.287	5	1	Median	0.96899	0.90386	5.9012	2	0	Median	0.85331	0.86081	18.937	3	0	Median	4130100000	2220200000	1909900000	662990000	301620000	361370000	940630000	523040000	417580000	1031700000	559080000	472640000	1494700000	836440000	658290000	4242	1520	3985	26128;26129;26130;26131;26132;26133;26134;26135;26136;26137;26138;26139;26140;26141	35638;35639;35640;35641;35642;35643;35644;35645;35646;35647;35648;35649;35650;35651;35652;35653;35654;35655;35656;35657;35658;35659;35660	35640			23	
APLKPYPVSPSDK	2	Acetyl (K)	1439.766	0.76603089	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	57.523	48.127	2	0.021165	24970	160513_QHF_FH_JSI10Kac_3	58.37	40.058			0.33222	0.32589	101.6	3	1	Median	NaN	NaN	NaN	0	0	Median	0.05763	0.064927	NaN	1	1	Median	0.33222	0.32589	NaN	1	0	Median	0.38734	0.42405	NaN	1	0	Median	13093000	10134000	2958500	0	0	0	2231200	2029600	201680	7819000	5883300	1935700	3042300	2221200	821120	4243	1520	3985	26142;26143;26144	35661;35662	35662	1542		2	
APLLASDSSSSGGSHSEDGDQK	1	Unmodified	2130.9301	0.9301487	487	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.332	17.862	3	0.0045348	15395	160511_QHF_FH_JSI12i_1	35.703	25.954			1.1866	1.2669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1866	1.2669	NaN	1	0	Median	22352000	11155000	11197000	0	0	0	0	0	0	0	0	0	22352000	11155000	11197000	4244	487	3986	26145	35663;35664	35663			2	
APLLGRK	1	Acetyl (Protein N-term)	795.49667	0.49667274	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	31.973	30.58	2	0.0017182	25531	160511_QHF_FH_JSI12i_3	83.229	67.075			1.0952	1.0796	12.048	2	0	Median	1.2117	0.9914	NaN	1	0	Median	0.9898	1.1756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183060000	82879000	100190000	89454000	36755000	52699000	93611000	46125000	47486000	0	0	0	0	0	0	4245	5330	3987	26146;26147;26148;26149	35665;35666;35667;35668;35669	35669			5	
APLNIPGTPVLEDFPQNDDEK	1	Unmodified	2308.1223	0.12230657	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	89.71	89.27	2;3	4.5999E-07	81322	160511_QHF_FH_JSI11i_1	82.36	77.743			0.96753	0.86075	13.321	5	4	Median	0.96753	0.78982	NaN	1	1	Median	0.75087	0.86075	NaN	1	1	Median	1.0029	0.96263	NaN	1	0	Median	0.94295	0.97558	18.701	2	2	Median	141850000	73288000	68561000	17713000	9326800	8386400	29548000	13605000	15943000	31985000	16447000	15538000	62603000	33909000	28694000	4246	2594	3988	26150;26151;26152;26153;26154;26155	35670;35671;35672;35673;35674;35675;35676	35671			7	
APLNVQFNSPLPGDAVK	1	Unmodified	1765.9363	0.93628412	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	5									2		2	1	75.82	75.225	2;3	4.0611E-06	66883	160511_QHF_FH_JSI9i_1	131.35	103.92			0.93482	0.88265	7.8931	5	1	Median	1.0492	0.86479	13.305	2	0	Median	NaN	NaN	NaN	0	0	Median	0.911	0.87673	0.95252	2	1	Median	0.92891	0.95574	NaN	1	0	Median	424180000	215980000	208200000	164030000	82430000	81600000	0	0	0	158150000	76326000	81824000	102000000	57221000	44778000	4247	512	3989	26156;26157;26158;26159;26160	35677;35678;35679;35680	35680			4	
APLNVTNTAGTSLPSVDLLQK	1	Unmodified	2138.1583	0.15829814	4904	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	86.52	86.194	3	0.0013907	78173	160511_QHF_FH_JSI10i_1	42.029	37.011			1.369	1.5553	29.959	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.369	1.5553	NaN	1	0	Median	1.1632	1.1245	NaN	1	0	Median	0.85428	0.85487	NaN	1	0	Median	61031000	29214000	31818000	0	0	0	25085000	12821000	12264000	19102000	9201900	9900300	16844000	7190700	9653700	4248	4904	3990	26161;26162;26163	35681;35682	35681			2	
APLPDLYPFGTMR	0	Unmodified	1476.7435	0.74352131	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	89.224	88.53	2	6.0384E-05	77993	160511_QHF_FH_JSI11i_2	107.24	81.948			0.93262	0.86727	15.387	5	1	Median	0.93262	0.79209	NaN	1	0	Median	0.69171	0.82289	7.4296	2	1	Median	1.0613	1.0714	NaN	1	0	Median	0.96379	1.0595	NaN	1	0	Median	978420000	515350000	463080000	201350000	106760000	94591000	220230000	129300000	90931000	376390000	187770000	188620000	180450000	91512000	88938000	4249	3893	3991	26164;26165;26166;26167;26168	35683;35684;35685;35686;35687;35688;35689	35688			7	
APLPLGHIK	1	Unmodified	944.58074	0.58073672	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	3.66		2	9						1	2	3	4	3	35.818	34.389	2;3	0.00034662	29706	160511_QHF_FH_JSI11i_3	58.981	49.767			1.0512	1.102	40.802	12	2	Median	1.1931	0.9651	25.155	2	1	Median	0.84972	0.95459	9.5973	3	0	Median	1.1808	1.1127	2.7192	4	0	Median	0.89041	0.90868	84.034	3	1	Plateau	3262900000	1478200000	1784700000	274830000	115600000	159240000	661020000	355660000	305360000	828910000	358150000	470760000	1498200000	648780000	849400000	4250	943	3992	26169;26170;26171;26172;26173;26174;26175;26176;26177;26178;26179;26180	35690;35691;35692;35693;35694;35695;35696;35697;35698;35699;35700;35701;35702;35703;35704;35705;35706;35707;35708;35709;35710;35711	35693			22	
APLVLKD	1	Unmodified	754.45889	0.45889025	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	3	2	1	29.329	28.699	2	0.039708	25856	160511_QHF_FH_JSI12i_1	47.849	34.8			1.1015	1.1506	13.921	8	0	Median	1.3434	1.1143	15.259	2	0	Median	0.85158	0.97115	17.922	3	0	Median	1.2079	1.2146	6.7513	2	0	Median	1.0755	1.1433	NaN	1	0	Median	7076300000	3474100000	3602200000	1434700000	632790000	801870000	2308900000	1192500000	1116500000	2270000000	1078400000	1191700000	1062700000	570490000	492200000	4251	4276	3993	26181;26182;26183;26184;26185;26186;26187;26188	35712;35713	35712			2	
APMFSWPR	0	Unmodified	990.47456	0.47455709	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							2	3	2	1	63.352	62.604	2	0.0044088	53928	160511_QHF_FH_JSI12i_3	68.787	48.232			1.2564	1.1628	17.905	8	0	Median	1.2988	1.0946	11.716	2	0	Median	0.87446	0.99704	29.297	3	0	Plateau	1.2952	1.2739	2.2524	2	0	Median	1.0617	1.092	NaN	1	0	Median	2715400000	1289300000	1426100000	938130000	415110000	523020000	733650000	373540000	360100000	763970000	355030000	408940000	279630000	145630000	133990000	4252	1372	3994	26189;26190;26191;26192;26193;26194;26195;26196	35714;35715;35716;35717;35718;35719;35720;35721	35721			8	
APNISMPDVDLNLK	1	Unmodified	1525.781	0.78102903	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	81.646	81.072	2;3	3.4954E-06	73699	160511_QHF_FH_JSI11i_1	125.97	109.3			0.98433	1.0059	7.3295	3	1	Plateau	1.1108	0.90318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95493	0.88573	NaN	1	1	Median	0.98433	1.0143	NaN	1	0	Median	219710000	111600000	108120000	51896000	25707000	26188000	0	0	0	68482000	34500000	33982000	99337000	51390000	47947000	4253	2286	3995	26197;26198;26199;26200;26201	35722;35723;35724;35725;35726;35727	35722			6	
APNLYMVPQGIRPVVQLTAIEILAWGLR	0	Unmodified	3117.7525	0.75251686	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			100.31	94.587	3	2.7527E-08	55666	160513_QHF_FH_JSI10Kac_6	81.292	75.572			1.0069	1.1964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0069	1.1964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162330000	85501000	76831000	0	0	0	162330000	85501000	76831000	0	0	0	0	0	0	4254	5161	3996	26202	35728	35728			1	
APNTPASGANGDGSMSQTQSGSTVK	1	Oxidation (M)	2365.0452	0.045195231	59	CON__P15636			yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	4.95	19	6	6	5	10	2				9	11	14	14	19.579	16.42	2;3	4.7623E-125	12248	160511_QHF_FH_JSI10i_1	275.76	257.67		+	0.98347	1.0571	25.094	41	6	Median	0.83629	0.70013	15.415	7	1	Median	0.96789	1.1473	16.739	10	1	Median	1.1076	1.0595	23.936	13	2	Median	1.0047	1.0681	10.178	11	2	Median	15505000000	7582700000	7922100000	3809000000	1879500000	1929500000	3806200000	1944800000	1861400000	3826400000	1756300000	2070100000	4063200000	2002200000	2061000000	4255	59	3997	26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232;26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246;26247;26248;26249;26250	35729;35730;35731;35732;35733;35734;35735;35736;35737;35738;35739;35740;35741;35742;35743;35744;35745;35746;35747;35748;35749;35750;35751;35752;35753;35754;35755;35756;35757;35758;35759;35760;35761;35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775;35776;35777;35778;35779;35780;35781;35782;35783;35784;35785;35786;35787;35788;35789;35790;35791;35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812;35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826;35827;35828;35829;35830;35831;35832;35833;35834;35835;35836;35837	35782		30	109	
APNTPASGANGDGSMSQTQSGSTVK	1	Unmodified	2349.0503	0.050280609	59	CON__P15636			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	4.82	12	8	6	5	10					7	10	14	10	26.144	22.32	2;3	2.1271E-215	18906	160511_QHF_FH_JSI9i_1	388.97	355.77		+	1.0085	1.1173	23.745	32	5	Median	0.81117	0.67865	33.264	4	1	Median	0.94373	1.1138	16.332	9	3	Median	1.1816	1.1318	18.509	10	1	Median	1.0594	1.1193	18.267	9	0	Median	17297000000	8322400000	8974500000	4706300000	2497600000	2208600000	3455600000	1716000000	1739700000	4389000000	1778500000	2610500000	4746000000	2330300000	2415700000	4256	59	3997	26251;26252;26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270;26271;26272;26273;26274;26275;26276;26277;26278;26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289;26290;26291	35838;35839;35840;35841;35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858;35859;35860;35861;35862;35863;35864;35865;35866;35867;35868;35869;35870;35871;35872;35873;35874;35875;35876;35877;35878;35879;35880;35881;35882;35883;35884;35885;35886;35887;35888;35889;35890;35891;35892;35893;35894;35895;35896;35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908;35909;35910;35911;35912;35913;35914;35915;35916;35917;35918;35919;35920	35901			82	
APNTPDILEIEFK	1	Unmodified	1485.7715	0.7715102	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	85.264	84.685	2	3.3516E-05	77337	160511_QHF_FH_JSI12i_1	117.2	100.53			0.87943	0.96652	15.672	8	0	Median	1.2035	0.99473	0.70292	2	0	Median	0.82204	0.99264	4.477	2	0	Median	0.76441	0.75332	24.896	2	0	Median	0.85627	0.92364	7.1244	2	0	Median	1110200000	585460000	524760000	153470000	63930000	89544000	345290000	192550000	152740000	259430000	141030000	118400000	352030000	187950000	164070000	4257	779	3998	26292;26293;26294;26295;26296;26297;26298;26299	35921;35922;35923;35924;35925;35926;35927;35928;35929;35930;35931;35932;35933;35934	35927			14	
APNTPDILEIEFKK	2	Unmodified	1613.8665	0.86647322	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.73	3	7	7							3	4	5	5	72.707	72.079	2;3	3.361E-22	64259	160511_QHF_FH_JSI11i_3	166.09	152.68			0.9083	0.95433	17.401	17	1	Median	1.1779	0.99576	4.3381	3	0	Plateau	0.89275	1.0589	21.104	4	0	Median	0.90641	0.91085	7.1358	5	0	Median	0.89301	0.93721	22.571	5	1	Median	13822000000	6345100000	7477100000	1340300000	561210000	779140000	1707400000	837080000	870270000	4348700000	2150900000	2197800000	6425800000	2795900000	3630000000	4258	779	3999	26300;26301;26302;26303;26304;26305;26306;26307;26308;26309;26310;26311;26312;26313;26314;26315;26316	35935;35936;35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947;35948;35949;35950;35951;35952;35953;35954;35955;35956;35957;35958;35959;35960;35961;35962;35963;35964;35965;35966;35967;35968;35969;35970;35971;35972;35973;35974;35975;35976;35977;35978;35979;35980;35981;35982;35983	35937			49	
APNYSCVMTGSWDK	1	Unmodified	1614.6807	0.68066306	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		57.31	56.871	2	0.014516	51315	160511_QHF_FH_JSI10i_1	53.967	36.102			1.5721	1.5668	7.8825	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4391	1.7319	NaN	1	1	Median	1.5073	1.5241	3.9097	2	2	Median	NaN	NaN	NaN	0	0	Median	212860000	80954000	131910000	0	0	0	64897000	23338000	41559000	147960000	57617000	90348000	0	0	0	4259	2092	4000	26317;26318;26319	35984;35985;35986	35985			3	
APPAATNSSK	1	Unmodified	942.47706	0.47705951	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.2902	4.9748	2	0.0021511	2949	160511_QHF_FH_JSI10i_1	61.593	30.857			0.98212	1.0012	8.5705	4	0	Median	1.286	1.0692	NaN	1	0	Median	0.78875	0.93757	NaN	1	0	Median	1.1067	1.0945	NaN	1	0	Median	0.87155	0.92952	NaN	1	0	Median	1567800000	806860000	760900000	358410000	158350000	200060000	441780000	256570000	185210000	420040000	209470000	210570000	347530000	182470000	165060000	4260	1117	4001	26320;26321;26322;26323	35987;35988;35989;35990;35991;35992;35993;35994	35992			8	
APPAPGPASGGSGEVDELFDVK	1	Unmodified	2096.0062	0.006214175	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	76.502	75.973	2;3	1.0388E-18	67545	160511_QHF_FH_JSI9i_1	150.69	141.53			0.92844	0.96227	6.751	9	0	Median	1.1805	0.96012	12.54	3	0	Median	0.83362	0.98384	1.7512	2	0	Median	0.95626	0.93776	3.6481	2	0	Median	0.90386	0.95735	1.3673	2	0	Median	2071000000	1087000000	984060000	409520000	194500000	215020000	514460000	293360000	221100000	588160000	310290000	277870000	558890000	288820000	270070000	4261	178	4002	26324;26325;26326;26327;26328;26329;26330;26331;26332	35995;35996;35997;35998;35999;36000;36001;36002;36003;36004;36005;36006;36007;36008;36009;36010;36011;36012;36013;36014;36015;36016;36017;36018;36019;36020;36021;36022;36023;36024;36025	36022			31	
APPARPVK	1	Unmodified	834.50757	0.50757178	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			6.3189	5.8093	3	0.015815	3859	160511_QHF_FH_JSI10i_3	46.426	8.8674			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	890900000	0	890900000	492040000	0	492040000	398860000	0	398860000	0	0	0	0	0	0	4262	2255	4003	26333;26334	36026;36027	36026			2	
APPAVMAAVDQALK	1	Unmodified	1380.7435	0.74352131	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.456	79.83	3	0.036939	70223	160511_QHF_FH_JSI11i_2	31.215	25.713			1.1238	1.0988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1238	1.0988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5033200	2042200	2991000	0	0	0	0	0	0	5033200	2042200	2991000	0	0	0	4263	5001	4004	26335	36028	36028			1	
APPEDDNREIATWK	1	Unmodified	1640.7794	0.77944912	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.03	34.902	3	0.050529	29668	160511_QHF_FH_JSI12i_3	32.275	20.507			0.77756	0.79207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77756	0.79207	NaN	1	1	Median	33397000	22458000	10939000	0	0	0	0	0	0	0	0	0	33397000	22458000	10939000	4264	21	4005	26336	36029	36029			1	
APPEQGK	1	Unmodified	725.3708	0.37080353	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	2.0846	1.8597	2	0.048713	992	160511_QHF_FH_JSI10i_1	43.124	27.684			1.1206	1.0867	37.018	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3272	1.5459	NaN	1	0	Median	1.1206	1.0867	NaN	1	0	Median	0.69553	0.73752	NaN	1	0	Median	176910000	90770000	86144000	0	0	0	50966000	23337000	27629000	76651000	39408000	37243000	49297000	28024000	21273000	4265	1439	4006	26337;26338;26339	36030	36030			1	
APPHELTEEEK	1	Unmodified	1278.6092	0.6091959	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.426	1	9	1							2	3	2	4	15.041	14.516	2;3	9.498E-07	11956	160511_QHF_FH_JSI9i_2	111.5	88.27			0.9872	1.051	7.537	10	1	Median	1.2168	1.0245	1.4744	2	0	Median	0.83924	1.0232	6.2213	3	0	Plateau	1.0659	1.076	0.62131	2	0	Median	0.91583	1.0199	13.326	3	1	Median	1000400000	476530000	523900000	204010000	92142000	111870000	280570000	139800000	140770000	257790000	125060000	132730000	258070000	119530000	138530000	4266	2400	4007	26340;26341;26342;26343;26344;26345;26346;26347;26348;26349;26350	36031;36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043	36034			13	
APPNATLEHFYLTSGK	1	Unmodified	1744.8784	0.87843489	4082	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	64.465	58.393	3	3.1494E-06	51759	160511_QHF_FH_JSI11i_3	100.35	85.881			1.0133	0.96661	6.0105	6	0	Median	1.1047	0.94531	NaN	1	0	Median	0.74273	0.85903	NaN	1	0	Median	1.0159	0.9888	0.058884	2	0	Median	0.93107	0.96337	6.5661	2	0	Median	1511800000	915600000	596200000	20736000	11137000	9599600	52354000	32458000	19896000	537220000	319400000	217820000	901490000	552610000	348880000	4267	4082	4008	26351;26352;26353;26354;26355;26356	36044;36045;36046;36047;36048;36049;36050;36051;36052;36053;36054	36045			11	
APPPGLPAETIK	1	Unmodified	1189.6707	0.67067394	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.109	46.451	2	0.021894	42065	160511_QHF_FH_JSI12i_1	41.704	24.192			0.89897	0.93051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89897	0.93051	NaN	1	0	Median	72993000	34834000	38159000	0	0	0	0	0	0	0	0	0	72993000	34834000	38159000	4268	1007	4009	26357	36055	36055			1	
APPQTHLPSGASSGTGSASATHGGGSPPGTR	0	Unmodified	2784.3175	0.31754576	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			25.509	24.202	3;4	1.5434E-27	19595	160511_QHF_FH_JSI9i_3	118.61	115.73			0.96059	0.94067	17.505	4	0	Median	1.2379	0.99036	4.3329	2	0	Median	0.66762	0.79631	20.615	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	303840000	144490000	159350000	202450000	85318000	117130000	101390000	59174000	42218000	0	0	0	0	0	0	4269	1585	4010	26358;26359;26360;26361	36056;36057;36058;36059;36060;36061;36062;36063	36060			8	
APPSVFAEVPQAQPVLVFK	1	Unmodified	2023.1142	0.11424848	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.591	9	9	1							5	4	4	6	100.53	100.41	2;3	8.572E-25	91083	160511_QHF_FH_JSI12i_1	134.25	119.94			0.9759	0.9664	10.306	19	4	Median	1.1509	0.96124	11.916	5	2	Median	0.8456	1.0188	10.197	4	0	Median	0.99515	1.0068	7.3977	4	0	Linear	0.95207	1.0307	10.981	6	2	Median	1283500000	661940000	621520000	212700000	100770000	111930000	286500000	150200000	136300000	330170000	178440000	151730000	454080000	232520000	221560000	4270	1111	4011	26362;26363;26364;26365;26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379;26380	36064;36065;36066;36067;36068;36069;36070;36071;36072;36073;36074;36075;36076;36077;36078;36079;36080;36081;36082;36083;36084;36085;36086;36087;36088;36089;36090;36091;36092;36093;36094;36095;36096	36072			33	
APPVDDAEVDELVLQTK	1	Unmodified	1837.9309	0.93092397	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	3	2	78.524	78.049	2;3	1.2506E-07	71049	160511_QHF_FH_JSI11i_1	92.977	85.599			0.95249	0.88171	15.907	4	2	Median	1.0634	0.86618	NaN	1	1	Median	0.63554	0.74843	NaN	1	0	Median	1.1294	1.1008	NaN	1	0	Median	0.85318	0.89752	NaN	1	1	Median	301750000	151570000	150170000	34840000	12302000	22538000	89577000	44120000	45457000	86578000	47012000	39566000	90750000	48141000	42609000	4271	5330	4012	26381;26382;26383;26384;26385;26386;26387	36097;36098;36099;36100;36101;36102;36103;36104	36098			8	
APQAPLHSVVQQLHGK	1	Unmodified	1708.9373	0.93728717	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		41.465	40.954	3;4	1.4483E-06	34191	160511_QHF_FH_JSI9i_3	87.519	75.354			1.1185	1.0546	24.447	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.57835	0.67017	NaN	1	1	Median	1.0902	1.0193	4.8157	2	0	Median	NaN	NaN	NaN	0	0	Median	297560000	149140000	148420000	0	0	0	65462000	36361000	29101000	232100000	112780000	119320000	0	0	0	4272	2669	4013	26388;26389;26390;26391	36105;36106;36107;36108	36108			4	
APQEFMTSHSEAGSR	0	Unmodified	1633.7155	0.71546866	4381	Q9BRR6	ADPGK	ADP-dependent glucokinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	20.563	20.294	3	2.7855E-05	17009	160511_QHF_FH_JSI11i_3	98.694	88.944			1.0666	0.9026	4.7142	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73483	0.9026	NaN	1	0	Median	1.0666	0.97787	NaN	1	0	Median	0.87643	0.89988	NaN	1	0	Median	144470000	71300000	73173000	0	0	0	33542000	15163000	18379000	69690000	31561000	38130000	41241000	24577000	16664000	4273	4381	4014	26392;26393;26394;26395	36109;36110;36111;36112	36109			4	
APQETYADIGGLDNQIQEIK	1	Unmodified	2202.0804	0.080441751	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	75.563	75.079	2;3	4.0231E-68	66643	160511_QHF_FH_JSI9i_1	178.43	169.33			1.0238	0.99441	3.439	8	0	Median	1.1831	0.97395	3.5494	2	0	Median	0.8079	0.96774	2.0084	2	0	Median	1.0362	1.0174	0.14966	2	0	Median	0.98139	1.0208	4.3125	2	0	Median	1906700000	1004600000	902130000	562040000	272450000	289590000	544460000	296150000	248310000	495510000	275630000	219880000	304700000	160350000	144350000	4274	1983	4015	26396;26397;26398;26399;26400;26401;26402;26403	36113;36114;36115;36116;36117;36118;36119;36120;36121;36122;36123;36124;36125;36126;36127;36128;36129;36130;36131;36132	36131			20	
APQEVEEDDGRSGAGEDPPMPASR	0	Unmodified	2496.0823	0.082309019	5714	Q9Y6A5	TACC3	Transforming acidic coiled-coil-containing protein 3	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			32.046	31.711	3	0.046754	28253	160511_QHF_FH_JSI10i_1	24.831	11.101			0.70584	0.82165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70584	0.82165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41447000	22235000	19212000	0	0	0	41447000	22235000	19212000	0	0	0	0	0	0	4275	5714	4016	26404	36133	36133			1	
APQHTAVGFK	1	Unmodified	1054.556	0.55597854	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	12.24	12.016	2	0.0037489	9071	160511_QHF_FH_JSI12i_3	68.456	56.1			0.33348	0.34267	68.238	3	2	Median	NaN	NaN	NaN	0	0	Median	0.90318	1.0393	NaN	1	0	Median	0.31641	0.29985	NaN	1	1	Median	0.33348	0.34267	NaN	1	1	Median	588480000	455920000	132570000	0	0	0	51434000	29794000	21639000	253230000	212440000	40791000	283830000	213690000	70139000	4276	313	4017	26405;26406;26407	36134;36135;36136	36136			3	
APQLVGQFIAR	0	Unmodified	1198.6822	0.68224168	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	65.486	60.612	2	4.2719E-05	49839	160511_QHF_FH_JSI9i_3	96.711	67.549			1.029	0.98561	15.783	8	0	Median	1.3596	1.1423	12.634	2	0	Median	0.71379	0.84635	11.373	2	0	Median	1.029	0.97925	2.017	2	0	Median	1.0574	1.1107	17.994	2	0	Median	1020800000	519400000	501400000	343000000	144990000	198000000	297410000	180900000	116510000	178610000	93882000	84724000	201790000	99624000	102170000	4277	2846	4018	26408;26409;26410;26411;26412;26413;26414;26415	36137;36138;36139;36140;36141;36142;36143;36144;36145;36146	36142			10	
APQMYEFHLPLSPEELLK	1	Unmodified	2141.0867	0.086713102	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	101.32	101.14	3	3.4474E-06	87019	160511_QHF_FH_JSI12i_2	97.32	87.571			0.90596	1.0082	10.648	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90596	1.0082	10.648	2	2	Median	232510000	125080000	107430000	0	0	0	0	0	0	0	0	0	232510000	125080000	107430000	4278	2605	4019	26416;26417	36147;36148	36147			2	
APQQEEGPK	1	Unmodified	982.47197	0.47197413	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.3665	5.0469	2	6.4003E-06	2930	160511_QHF_FH_JSI11i_1	113.18	15.541			0.85146	0.86237	9.0524	4	0	Median	1.2044	1.0054	NaN	1	0	Median	0.71384	0.83751	NaN	1	0	Median	0.83412	0.82309	NaN	1	0	Median	0.86917	0.88797	NaN	1	0	Median	752710000	371480000	381230000	205610000	91612000	114000000	194430000	101360000	93062000	177810000	96848000	80965000	174860000	81654000	93204000	4279	1432	4020	26418;26419;26420;26421	36149;36150;36151;36152;36153;36154;36155	36149			7	
APQVDVDK	1	Unmodified	870.4447	0.44469675	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.524	14.083	2	0.037328	11476	160511_QHF_FH_JSI11i_1	40.067	28.998			0.82624	0.85929	10.291	4	0	Median	1.0154	0.83843	NaN	1	0	Median	0.76718	0.90901	NaN	1	0	Median	0.88985	0.88067	NaN	1	0	Median	0.69266	0.7206	NaN	1	0	Median	2040800000	1136000000	904770000	479580000	202760000	276820000	561790000	383350000	178440000	438650000	214100000	224550000	560770000	335810000	224950000	4280	1519	4021	26422;26423;26424;26425	36156;36157	36156			2	
APQVLVLAPTR	0	Unmodified	1163.7026	0.70264277	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.91	4	3	2				2	2		1	4	4	4	59.346	55.263	2	0.00014148	47677	160511_QHF_FH_JSI11i_2	83.862	74.468			0.93993	1.09	19.188	12	2	Median	0.81119	0.66352	NaN	1	0	Median	0.8478	1.0157	9.0762	4	0	Linear	1.1065	1.1122	12.211	4	0	Median	0.76447	0.83421	23.789	3	2	Plateau	2122300000	1087900000	1034400000	91403000	43850000	47553000	491300000	263860000	227440000	887100000	446660000	440440000	652490000	333500000	318990000	4281	4940	4022	26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438	36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169;36170;36171	36165			14	
APSDLYQIILK	1	Unmodified	1259.7125	0.71253876	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	85.283	84.74	2	0.0012302	74492	160511_QHF_FH_JSI11i_2	65.157	57.232			0.98808	1.0102	7.0565	7	0	Median	1.0517	0.88836	NaN	1	0	Median	0.87988	1.0649	4.3361	2	0	Median	1.0094	0.99003	1.0667	2	0	Median	0.9613	1.0466	4.9973	2	0	Median	414890000	207200000	207680000	53810000	28147000	25662000	115310000	62442000	52871000	134790000	62197000	72595000	110970000	54415000	56555000	4282	871	4023	26439;26440;26441;26442;26443;26444;26445	36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182	36180			11	
APSDSSLGTPSDGRPELR	0	Unmodified	1840.8915	0.89151877	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	32.32	31.829	3	0.041276	27681	160511_QHF_FH_JSI11i_3	32.091	22.17			1.0749	1.0803	32.072	5	2	Median	0.79237	0.68978	NaN	1	0	Median	0.60873	0.74226	NaN	1	0	Median	1.1413	1.102	2.8052	2	2	Median	1.5436	1.5029	NaN	1	0	Median	262250000	126720000	135520000	56793000	26570000	30224000	54136000	25290000	28846000	106180000	55250000	50929000	45138000	19614000	25524000	4283	2690	4024	26446;26447;26448;26449;26450	36183;36184;36185;36186	36183			4	
APSEEDSLSSVPISPYK	1	Unmodified	1804.8731	0.87307474	5707	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	6									2	1	2	1	61.669	60.988	2;3	8.606E-05	55340	160511_QHF_FH_JSI11i_1	81.494	72.981			0.79963	0.81883	21.08	6	1	Median	0.86519	0.72011	13.556	2	0	Median	0.76167	0.86732	NaN	1	0	Median	0.99815	0.96354	34.3	2	0	Median	0.80646	0.84598	NaN	1	1	Median	209700000	118280000	91420000	77709000	42288000	35421000	25993000	13832000	12161000	85188000	48822000	36366000	20809000	13337000	7472300	4284	5707	4025	26451;26452;26453;26454;26455;26456	36187;36188;36189;36190;36191;36192	36188			5	
APSEEELHGDQTDFGQGSQSPQK	1	Unmodified	2471.0837	0.083689228	3728	Q8TE77	SSH3	Protein phosphatase Slingshot homolog 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.176	31.841	3	0.0015455	28422	160511_QHF_FH_JSI10i_1	42.322	34.518			0.99426	1.1514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99426	1.1514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27464000	8129600	19334000	0	0	0	27464000	8129600	19334000	0	0	0	0	0	0	4285	3728	4026	26457	36193	36193			1	
APSGRDEPCLLK	1	Unmodified	1341.6711	0.67108465	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			3									2	1	24.179	24.17	2;3	0.040951	20478	160511_QHF_FH_JSI11i_3	52.79	38.123			0.77351	0.73455	31.612	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75779	0.71746	3.3304	2	0	Median	1.3123	1.2386	NaN	1	0	Median	184660000	97421000	87242000	0	0	0	0	0	0	152370000	81554000	70813000	32296000	15867000	16429000	4286	512	4027	26458;26459;26460	36194;36195	36195			2	
APSHSESALNNDSK	1	Unmodified	1455.659	0.65899964	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.86	4.19	1	3	2				1			1	2		4	6.7631	6.5031	2;3	0.00012991	4430	160511_QHF_FH_JSI10i_1	69.878	55.409			0.8346	0.98109	28.147	5	2	Median	1.3839	1.1902	NaN	1	1	Median	0.79627	0.98109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8346	0.85459	29.853	3	1	Median	210530000	102130000	108390000	38142000	14081000	24060000	46320000	24557000	21764000	0	0	0	126060000	63494000	62569000	4287	5147	4028	26461;26462;26463;26464;26465;26466;26467	36196;36197;36198;36199;36200	36196			5	
APSHVPFLLIGGGTAAFAAAR	0	Unmodified	2023.1003	0.10032975	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			2						10	3	4	4	1	85.581	78.82	2;3;4	3.4513E-88	41659	160513_QHF_FH_JSI9Kac_6	260.49	230.95			0.96733	1.0304	20.963	12	1	Median	1.2532	1.0522	17.726	3	0	Median	0.85254	1.0052	12.01	4	1	Median	1.2503	1.2058	34.396	4	0	Median	0.90997	0.96408	NaN	1	0	Median	4198000000	2087700000	2110200000	1023100000	461570000	561520000	2065900000	1118400000	947570000	809230000	354110000	455120000	299680000	153670000	146010000	4288	736	4029	26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479	36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211	36206			11	
APSIIFIDELDAIGTK	1	Unmodified	1701.9189	0.91890272	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	101.57	101.46	2;3	7.0214E-30	90018	160511_QHF_FH_JSI10i_2	186.13	156.36			1.0314	1.1282	15.381	8	3	Median	1.1651	0.9869	17.051	2	1	Median	0.88296	1.0867	11.427	2	0	Median	1.1654	1.1782	24.113	2	0	Median	1.0942	1.2267	9.9619	2	2	Median	2409800000	1203900000	1205900000	381190000	198490000	182700000	525940000	283530000	242410000	713100000	332830000	380270000	789530000	389030000	400500000	4289	1131	4030	26480;26481;26482;26483;26484;26485;26486;26487	36212;36213;36214;36215;36216;36217;36218;36219;36220	36219			9	
APSNTFHPQDFSDVISFILYGNSHR	0	Unmodified	2848.3569	0.35689138	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.968	90.248	4	1.7554E-06	52153	160513_QHF_FH_JSI10Kac_6	76.161	65.258			0.80162	0.92225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80162	0.92225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184790000	99153000	85635000	0	0	0	184790000	99153000	85635000	0	0	0	0	0	0	4290	4205	4031	26488	36221	36221			1	
APSPAPSSVPLGSEK	1	Unmodified	1422.7355	0.73545904	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.312	36.713	2	0.042857	33266	160511_QHF_FH_JSI12i_1	45.829	21.037			0.8131	0.81195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8131	0.81195	NaN	1	1	Median	16578000	8586100	7991700	0	0	0	0	0	0	0	0	0	16578000	8586100	7991700	4291	489	4032	26489	36222	36222			1	
APSQHIFFVQHIEAVR	0	Unmodified	1877.9901	0.99005102	3518	Q8N3E9	PLCD3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	65.103	56.094	3;4	6.0601E-05	30745	160513_QHF_FH_JSI10Kac_6	84.035	70.522			1.0956	1.1352	20.017	6	0	Median	1.6287	1.4117	26.753	2	0	Median	0.87113	1.0182	10.497	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0956	1.1872	10.409	2	0	Median	202360000	102320000	100050000	46796000	18380000	28416000	123490000	67438000	56056000	0	0	0	32071000	16497000	15574000	4292	3518	4033	26490;26491;26492;26493;26494;26495	36223;36224;36225;36226;36227	36227			3	
APSRQDVYGPQPQVR	0	Unmodified	1696.8645	0.86451616	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.786	22.466	3	0.0026034	18111	160511_QHF_FH_JSI9i_3	59.607	47.462			1.2806	1.049	NaN	1	1	Median	1.2806	1.049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42828000	19147000	23681000	42828000	19147000	23681000	0	0	0	0	0	0	0	0	0	4293	442	4034	26496	36228	36228			1	
APSSSSLNSATSSQSK	1	Unmodified	1537.722	0.72199382	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.822	12.561	2	0.00094204	10136	160511_QHF_FH_JSI11i_1	74.537	47.864			0.2826	0.3379	52.873	3	3	Median	NaN	NaN	NaN	0	0	Median	0.2826	0.3379	NaN	1	1	Median	0.21797	0.21057	NaN	1	1	Median	0.57024	0.60508	NaN	1	1	Median	450830000	365670000	85168000	0	0	0	129890000	92434000	37456000	212420000	184590000	27822000	108530000	88640000	19890000	4294	2883	4035	26497;26498;26499	36229;36230;36231;36232	36229			4	
APSTSDSVR	0	Unmodified	918.44067	0.44067401	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	6.2131	3.5895	2	0.0037842	3644	160511_QHF_FH_JSI10i_1	58.815	31.853			1.0204	1.0677	6.5126	6	0	Median	1.2809	1.0259	NaN	1	0	Median	0.91837	1.0787	NaN	1	0	Median	1.0579	1.0458	11.565	2	0	Median	1.0204	1.1011	5.8178	2	0	Median	1385900000	734040000	651830000	253370000	123500000	129870000	355270000	203560000	151710000	440210000	224650000	215570000	337020000	182340000	154680000	4295	1220	4036	26500;26501;26502;26503;26504;26505	36233;36234;36235;36236;36237;36238	36238			6	
APSVANVGSHCDLSLK	1	Unmodified	1653.8145	0.81445442	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.605	42.494	3	0.00022633	37374	160511_QHF_FH_JSI11i_3	59.502	46.366			1.0033	0.97619	2.1008	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0568	0.9908	NaN	1	0	Median	0.95259	0.9618	NaN	1	0	Median	154030000	76370000	77655000	0	0	0	0	0	0	74033000	33523000	40510000	79993000	42847000	37146000	4296	1192	4037	26506;26507	36239;36240	36239			2	
APSVATVGSICDLNLK	1	Unmodified	1643.8553	0.8552566	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	71.514	71.125	2;3	3.8843E-06	64801	160511_QHF_FH_JSI12i_1	116.96	104.8			0.80155	0.84203	34.775	6	0	Median	NaN	NaN	NaN	0	0	Median	0.69091	0.81746	35.203	2	0	Median	0.67391	0.64376	6.9541	2	0	Median	1.19	1.2469	16.648	2	0	Median	328810000	174910000	153900000	0	0	0	98807000	48475000	50332000	128990000	74222000	54768000	101010000	52213000	48799000	4297	512	4038	26508;26509;26510;26511;26512;26513	36241;36242;36243;36244;36245;36246;36247;36248;36249;36250	36246			9	
APSVPAAEPEYPK	1	Unmodified	1354.6769	0.67688153	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	12					2				2	3	5	4	40.641	39.245	2;3	3.3493E-06	35455	160511_QHF_FH_JSI11i_1	122.69	101.95			0.9708	0.99087	7.113	11	6	Median	1.1613	0.94512	1.4258	2	0	Median	0.86913	1.0425	3.7761	2	1	Median	0.995	0.95276	11.173	4	2	Median	0.9708	0.99889	2.4085	3	3	Plateau	3699600000	1870600000	1829000000	512100000	234870000	277220000	713250000	373380000	339870000	1331400000	680000000	651410000	1142800000	582340000	560500000	4298	1835	4039	26514;26515;26516;26517;26518;26519;26520;26521;26522;26523;26524;26525;26526;26527	36251;36252;36253;36254;36255;36256;36257;36258;36259;36260;36261;36262;36263;36264;36265;36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276	36256			26	
APTAALPQGVVMAASPGSLHSPQQLAEEATR	0	Unmodified	3084.5662	0.56623223	2200	Q03060	CREM	cAMP-responsive element modulator	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		83.694	83.694	3	3.7209E-06	74684	160511_QHF_FH_JSI11i_3	50.144	43.983			1.0784	1.0288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0784	1.0288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18114000	4502600	13612000	0	0	0	0	0	0	18114000	4502600	13612000	0	0	0	4299	2200	4040	26528;26529	36277;36278	36277			2	
APTFPSSNYFTAMWTIAK	1	Unmodified	2031.9764	0.97643437	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	1	2	1	93.91	85.231	2;3	1.4915E-31	46065	160513_QHF_FH_JSI12Kac_6	210.34	179.61			1.0375	1.0068	14.144	7	7	Median	1.1279	0.96642	19.289	3	3	Median	0.83443	0.96555	NaN	1	1	Median	1.1133	1.0635	7.7552	2	2	Median	1.0318	1.0808	NaN	1	1	Median	458710000	229340000	229370000	153870000	65721000	88145000	108680000	65481000	43195000	145750000	66075000	79677000	50416000	32064000	18352000	4300	5138	4041	26530;26531;26532;26533;26534;26535;26536	36279;36280;36281;36282;36283;36284;36285	36284			7	
APTIETVVLYTGETPSEQDQGK	1	Unmodified	2362.154	0.15400062	4541	Q9BYC8	MRPL32	39S ribosomal protein L32, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	75.017	74.649	3	1.0475E-15	67626	160511_QHF_FH_JSI10i_1	133.24	124.53			0.81336	0.88941	1.4128	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76083	0.88057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86952	0.89834	NaN	1	1	Median	149070000	86140000	62932000	0	0	0	84438000	50583000	33855000	0	0	0	64634000	35557000	29077000	4301	4541	4042	26537;26538	36286;36287;36288	36288			3	
APTKPPVGPK	2	Acetyl (K)	1032.5968	0.59678072	4138	Q96JC9	EAF1	ELL-associated factor 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0						5				1	1	2	1	31.199	20.683	2;3	0.0022819	14968	160513_QHF_FH_JSI12Kac_3	57.532	38.438			0.98016	1.0291	21.747	5	0	Median	0.84135	0.68783	NaN	1	0	Median	0.6197	0.72556	NaN	1	0	Median	1.0785	1.0473	2.4805	2	0	Median	0.98016	1.0509	NaN	1	0	Median	118800000	63380000	55419000	79733000	44401000	35332000	5423700	3310000	2113600	27506000	12666000	14840000	6136900	3003100	3133800	4302	4138	4043	26539;26540;26541;26542;26543	36289;36290;36291;36292;36293;36294;36295;36296	36294	3048		8	
APTNIVYK	1	Unmodified	904.50182	0.5018177	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.018	22.479	2	0.0076348	19850	160511_QHF_FH_JSI12i_1	58.917	21.272			1.2665	1.1931	7.7685	4	0	Linear	1.7233	1.4071	NaN	1	0	Median	1.1609	1.3793	NaN	1	0	Median	1.3816	1.361	NaN	1	0	Median	1.1093	1.1863	NaN	1	0	Median	932090000	409290000	522800000	172120000	52160000	119960000	175530000	92478000	83049000	224920000	96877000	128040000	359530000	167770000	191750000	4303	1086	4044	26544;26545;26546;26547	36297;36298;36299	36298			3	
APVAGTCYQAEWDDYVPK	1	Unmodified	2068.92	0.9200417	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	72.045	71.528	2;3	1.3796E-137	65054	160511_QHF_FH_JSI11i_1	288	278.71			1.0147	0.99941	18.787	8	0	Median	1.1716	0.96207	3.1528	2	0	Median	0.85571	1.0185	0.43681	2	0	Median	0.88696	0.85945	0.40049	2	0	Median	1.2978	1.3798	2.2583	2	0	Median	1612800000	740450000	872300000	162800000	69462000	93334000	308060000	158350000	149710000	645990000	317370000	328610000	495910000	195260000	300640000	4304	1343	4045	26548;26549;26550;26551;26552;26553;26554;26555	36300;36301;36302;36303;36304;36305;36306;36307;36308;36309;36310;36311;36312;36313;36314;36315;36316;36317;36318;36319;36320;36321;36322;36323;36324	36302			25	
APVAIGVAAMSTAEMLTSGLK	1	Unmodified	2017.0588	0.058783792	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	102.25	102.22	3	9.6218E-19	91374	160511_QHF_FH_JSI11i_3	153.21	139.79			0.90863	0.87575	9.7619	4	0	Median	1.0136	0.8805	NaN	1	0	Median	0.61124	0.73812	NaN	1	0	Median	0.89763	0.87103	NaN	1	0	Median	0.91978	0.92324	NaN	1	0	Median	331420000	185960000	145450000	33871000	23092000	10779000	42289000	26082000	16206000	62525000	33596000	28930000	192730000	103190000	89536000	4305	1512	4046	26556;26557;26558;26559	36325;36326;36327;36328	36325			4	
APVDFGYVGIDSILEQMR	0	Unmodified	2008.9928	0.99281272	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	102.05	101.94	3	1.9482E-05	87862	160511_QHF_FH_JSI12i_2	78.501	61.621			1.1193	1.274	9.968	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9159	1.1205	NaN	1	0	Median	1.3286	1.3635	NaN	1	0	Median	1.1193	1.274	NaN	1	0	Median	735180000	354400000	380780000	0	0	0	191370000	108290000	83079000	225300000	98231000	127070000	318510000	147880000	170630000	4306	5298	4047	26560;26561;26562	36329;36330	36329			2	
APVDITGQFEK	1	Unmodified	1203.6136	0.61355299	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.247	49.57	2	0.0046838	43990	160511_QHF_FH_JSI9i_1	64.103	36.279			0.13309	0.15056	15.456	4	4	Median	0.19156	0.15431	NaN	1	1	Median	0.12727	0.15242	NaN	1	1	Median	0.11473	0.1116	NaN	1	1	Median	0.13917	0.14872	NaN	1	1	Median	7606300000	7224700000	381580000	1298400000	1192700000	105660000	2042700000	1953800000	88898000	2825900000	2722700000	103200000	1439300000	1355500000	83818000	4307	1665	4048	26563;26564;26565;26566	36331;36332;36333;36334	36334			4	
APVEEAFLYAK	1	Unmodified	1236.639	0.63903946	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	59.891	59.246	2	0.0079212	53684	160511_QHF_FH_JSI11i_1	50.372	33.602			0.72388	0.74135	18.386	4	0	Median	0.88429	0.72563	NaN	1	0	Median	0.63942	0.75742	NaN	1	0	Median	0.8195	0.81401	NaN	1	0	Median	0.52512	0.53613	NaN	1	0	Median	366800000	199550000	167250000	84557000	40389000	44168000	111240000	60298000	50943000	103020000	58922000	44096000	67984000	39941000	28043000	4308	4922	4049	26567;26568;26569;26570	36335;36336	36335			2	
APVEHVVADAGAFLR	0	Unmodified	1550.8205	0.82052608	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								2	2	1	65.172	64.616	2;3	6.3953E-05	56638	160511_QHF_FH_JSI11i_2	75.78	52.175			0.84247	1.0178	5.0895	3	1	Median	NaN	NaN	NaN	0	0	Median	0.81543	0.97579	5.963	2	1	Median	1.0738	1.0252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143530000	78947000	64582000	0	0	0	125310000	70605000	54703000	18220000	8341600	9878800	0	0	0	4309	5414	4050	26571;26572;26573;26574;26575	36337;36338;36339;36340;36341	36338			4	
APVGSVVSVPSQSSASSDK	1	Unmodified	1787.8901	0.89012178	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	39.883	39.256	2;3	2.5582E-10	35096	160511_QHF_FH_JSI10i_1	168.31	150.94			0.97834	0.99743	10.621	8	0	Median	1.1211	0.92076	16.092	2	0	Median	0.83935	0.98595	10.132	2	0	Median	1.0217	0.98212	4.5554	2	0	Median	1.0375	1.0745	12.897	2	0	Median	580710000	284040000	296670000	112840000	51317000	61521000	175940000	90121000	85822000	172120000	88187000	83929000	119810000	54412000	65403000	4310	1774	4051	26576;26577;26578;26579;26580;26581;26582;26583;26584	36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353	36347			12	
APVGVEK	1	Unmodified	698.39629	0.39629	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			8.9598	8.4752	2	0.049808	6654	160511_QHF_FH_JSI10i_1	42.914	10.444			0.90096	0.90117	5.7079	2	0	Median	1.0998	0.93828	NaN	1	0	Median	0.73807	0.86552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8605300000	4269200000	4336100000	3863900000	1673600000	2190200000	4741400000	2595600000	2145800000	0	0	0	0	0	0	4311	312	4052	26585;26586	36354;36355	36354			2	
APVIDIGIANTGK	1	Unmodified	1267.7136	0.71360139	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.655	62.021	2	0.00010872	56133	160511_QHF_FH_JSI10i_1	91.313	57.368			1.0176	0.98203	4.7728	4	0	Median	1.153	0.93302	NaN	1	0	Median	0.80872	0.95817	NaN	1	0	Median	1.0592	1.0374	NaN	1	0	Median	0.97754	1.0065	NaN	1	0	Median	381540000	195990000	185560000	51447000	24734000	26713000	112200000	56180000	56016000	121890000	64918000	56976000	96007000	50155000	45852000	4312	5635	4053	26587;26588;26589;26590	36356;36357;36358;36359;36360;36361	36358			4	
APVIRPGGTLGLSEAADSDAHLFQDSTEPR	0	Unmodified	3106.532	0.53195521	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				75.886	74.448	4	0.0036063	61140	160511_QHF_FH_JSI9i_3	28.405	22.31			1.3606	1.1236	NaN	1	0	Median	1.3606	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41071000	16565000	24507000	41071000	16565000	24507000	0	0	0	0	0	0	0	0	0	4313	4581	4054	26591	36362;36363	36362			2	
APVLLAGTADGNTWMWK	1	Unmodified	1829.9134	0.91344018	2464	Q13685	AAMP	Angio-associated migratory cell protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			91.738	91.37	2	5.3631E-06	81067	160511_QHF_FH_JSI10i_2	112.15	101.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15664000	15664000	0	6007900	6007900	0	9655800	9655800	0	0	0	0	0	0	0	4314	2464	4055	26592;26593	36364;36365;36366	36365			3	
APVLQYLYYLAQIGIAMSPLSNNSLFLSYHR	0	Unmodified	3541.8432	0.84318236	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.65	97.925	4	1.9337E-31	57938	160513_QHF_FH_JSI10Kac_6	167.87	153.2			0.86219	1.0184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86219	1.0184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129770000	98819000	30955000	0	0	0	129770000	98819000	30955000	0	0	0	0	0	0	4315	2168	4056	26594	36367	36367			1	
APVLSIDPPVHEVEQGIDAK	1	Unmodified	2113.1055	0.10553429	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.963	74.72	3	0.057709	64570	160511_QHF_FH_JSI12i_2	19.587	10.056			0.92193	1.0097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92193	1.0097	NaN	1	1	Median	19408000	10156000	9252600	0	0	0	0	0	0	0	0	0	19408000	10156000	9252600	4316	4069	4057	26595	36368	36368			1	
APVLVALALIEGGMK	1	Unmodified	1480.8687	0.86872182	3931	Q93096	PTP4A1	Protein tyrosine phosphatase type IVA 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	4	3	3	100.88	98.026	2;3	1.3959E-29	83224	160511_QHF_FH_JSI9i_3	184.24	166.43			1.014	0.943	12.212	12	2	Median	1.1172	0.93801	9.6812	3	1	Plateau	0.7965	0.89613	3.4988	3	1	Median	1.1	1.0319	12.629	3	0	Median	1.0026	1.0131	12.376	3	0	Median	1181800000	624430000	557410000	225240000	106340000	118900000	248750000	148930000	99820000	320620000	150820000	169790000	387240000	218330000	168900000	4317	3931	4058	26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608	36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381;36382;36383;36384	36377			16	
APVLVALALIEGGMK	1	Oxidation (M)	1496.8636	0.86363645	3931	Q93096	PTP4A1	Protein tyrosine phosphatase type IVA 1	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				101.83	101.64	2	0.00060093	82556	160511_QHF_FH_JSI9i_3	109.24	85.249			0.76887	0.62282	NaN	1	1	Median	0.76887	0.62282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25645000	15901000	9743300	25645000	15901000	9743300	0	0	0	0	0	0	0	0	0	4318	3931	4058	26609	36385	36385		2360	1	
APVMNTWFYITYEK	1	Unmodified	1761.8436	0.84362928	5703	Q9Y657	SPIN1	Spindlin-1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	87.748	78.306	2	0.00062457	41885	160513_QHF_FH_JSI12Kac_6	99.5	84.624			0.77034	0.81152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77034	0.81152	NaN	1	1	Median	31840000	18321000	13519000	0	0	0	0	0	0	0	0	0	31840000	18321000	13519000	4319	5703	4059	26610	36386	36386			1	
APVNTAELTDLLIQQNHIGSVIK	1	Unmodified	2473.354	0.35403784	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	4	2	100.61	100.54	3	2.809E-59	86398	160511_QHF_FH_JSI12i_2	214.49	197.77			0.97634	0.94419	10.557	8	1	Median	1.1365	0.94792	NaN	1	0	Median	0.77792	0.92069	3.0058	2	0	Median	0.91243	0.94038	8.542	3	1	Median	1.0705	1.1413	3.7906	2	0	Median	3465900000	1694800000	1771100000	591050000	267120000	323930000	522230000	274720000	247510000	861430000	427800000	433630000	1491200000	725170000	766000000	4320	5205	4060	26611;26612;26613;26614;26615;26616;26617;26618;26619	36387;36388;36389;36390;36391;36392;36393;36394;36395;36396;36397;36398;36399;36400	36391			14	
APVPASELLASGVLSR	0	Unmodified	1565.8777	0.8777066	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.81	3	4	3					1		1	1	5	4	81.255	79.857	2;3	3.7807E-06	69637	160511_QHF_FH_JSI12i_2	94.532	76.168			1.0149	1.0125	24.438	11	1	Median	0.84258	0.71707	NaN	1	0	Median	0.70879	0.80848	NaN	1	0	Median	1.0149	1.0125	25.311	5	1	Median	1.1102	1.1705	15.063	4	0	Median	515350000	264270000	251080000	81580000	46606000	34975000	21683000	13647000	8035700	237070000	117490000	119580000	175010000	86524000	88490000	4321	2636	4061	26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630	36401;36402;36403;36404;36405;36406;36407;36408;36409;36410	36404			9	
APVPGTPDSLSSGSSR	0	Unmodified	1513.7372	0.73724996	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				3	3	3	1	32.638	29.481	2;3	0.00011961	29150	160511_QHF_FH_JSI10i_1	49.595	37.429			1.2375	1.1848	12.547	10	5	Median	1.3259	1.0191	10.903	3	1	Median	0.99116	1.1689	12.407	3	2	Plateau	1.2598	1.2471	4.8254	3	1	Median	1.3538	1.4488	NaN	1	1	Median	2505300000	1307100000	1198200000	507000000	242710000	264290000	1103400000	620080000	483330000	526420000	261860000	264550000	368510000	182450000	186050000	4322	5357	4062	26631;26632;26633;26634;26635;26636;26637;26638;26639;26640	36411;36412;36413;36414;36415;36416;36417;36418;36419;36420	36414			10	
APVPTGEVYFADSFDR	0	Unmodified	1769.8261	0.82606496	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	8		2							3	3	2	2	75.6	74.924	2;3	6.2125E-30	68302	160511_QHF_FH_JSI12i_1	187.44	170.41			0.99275	0.92667	50.727	10	1	Median	1.1402	0.93396	7.645	3	0	Plateau	0.72032	0.86451	87.416	3	1	Median	1.033	1.0006	1.446	2	0	Median	0.97348	1.0427	2.8023	2	0	Median	9887300000	5252700000	4634700000	1835400000	875180000	960180000	2899200000	1718800000	1180400000	3137400000	1620200000	1517200000	2015400000	1038500000	976840000	4323	1299	4063	26641;26642;26643;26644;26645;26646;26647;26648;26649;26650	36421;36422;36423;36424;36425;36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441;36442;36443	36427			23	
APVPTGEVYFADSFDRGTLSGWILSK	1	Unmodified	2812.4072	0.40719562	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		10.6	6.62		1	1						3	2	1	2		96.108	91.303	3	3.8489E-14	47108	160513_QHF_FH_JSI9Kac_6	104.53	84.992			0.74494	0.78546	26.096	5	0	Median	0.98981	0.84486	10.31	2	0	Median	0.74494	0.89101	NaN	1	0	Median	0.58738	0.55524	17.377	2	0	Median	NaN	NaN	NaN	0	0	Median	1363600000	756580000	607010000	464170000	224940000	239230000	557500000	336670000	220830000	341910000	194970000	146940000	0	0	0	4324	1299	4064	26651;26652;26653;26654;26655	36444;36445;36446;36447;36448;36449	36447			6	
APVQPQQSPAAAPGGTDEK	1	Unmodified	1847.9014	0.90135517	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	23.419	22.876	2;3	3.0338E-32	19529	160511_QHF_FH_JSI9i_1	185.95	152.06			1.1996	1.084	40.872	8	1	Median	1.1568	0.9412	35.53	2	0	Median	0.91611	1.0716	66.165	2	1	Median	1.3103	1.2694	37.873	2	0	Median	1.1338	1.1655	60.367	2	0	Median	647280000	313070000	334220000	137600000	68941000	68658000	143850000	74348000	69504000	205840000	87723000	118120000	159990000	82053000	77935000	4325	2370	4065	26656;26657;26658;26659;26660;26661;26662;26663	36450;36451;36452;36453;36454;36455;36456;36457;36458;36459;36460;36461	36460			10	
APVQPQQSPAAAPGGTDEKPSGK	2	Unmodified	2217.1026	0.10257418	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	24.649	21.959	3;4	3.704E-24	18856	160511_QHF_FH_JSI11i_1	163.95	153.62			1.0659	1.0796	23.569	11	4	Median	1.7398	1.4425	9.6079	2	1	Median	0.78916	0.93375	26.418	3	1	Median	1.0912	1.0796	5.1094	3	1	Median	0.97525	1.0041	8.2515	3	1	Plateau	2226300000	1112500000	1113800000	568330000	247590000	320730000	441410000	244390000	197020000	526580000	255100000	271480000	689990000	365460000	324530000	4326	2370	4066	26664;26665;26666;26667;26668;26669;26670;26671;26672;26673;26674	36462;36463;36464;36465;36466;36467;36468;36469;36470;36471;36472;36473;36474;36475	36463			14	
APVSALPLAPNHLGGGAVVLGAESHASK	1	Unmodified	2619.4133	0.41328405	2369	Q13190	STX5	Syntaxin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		71.962	71.237	4	3.0052E-21	63303	160511_QHF_FH_JSI11i_3	116.52	110.68			0.88836	0.92367	0.10312	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81895	0.923	NaN	1	1	Median	0.96366	0.92434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	419220000	210280000	208930000	0	0	0	106950000	62027000	44923000	312270000	148260000	164010000	0	0	0	4327	2369	4067	26675;26676	36476;36477;36478	36477			3	
APVSQAAKFDPSTK	2	Acetyl (K)	1487.762	0.76200815	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		49.957	40.5	3	0.050144	22338	160513_QHF_FH_JSI11Kac_3	34.302	21.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	744150	744150	0	0	0	0	0	0	0	744150	744150	0	0	0	0	4328	2175	4068	26677	36479	36479			1	
APVSSTESVIQSNTPTPPPSQPLNETAEEESR	0	Unmodified	3378.6063	0.60630195	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.931	62.285	4	0.02626	56700	160511_QHF_FH_JSI12i_1	19.155	13.725			1.2637	1.3039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2637	1.3039	NaN	1	1	Median	51677000	12691000	38986000	0	0	0	0	0	0	0	0	0	51677000	12691000	38986000	4329	4848	4069	26678	36480	36480			1	
APVSYPNTLPESFTK	1	Unmodified	1649.8301	0.83008771	3804	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	64.666	64.1	2	1.3794E-06	58198	160511_QHF_FH_JSI11i_1	133.32	107.28			1.0476	1.0182	15.991	5	2	Median	1.1891	0.96079	NaN	1	0	Median	0.87465	1.0339	28.037	2	2	Median	1.0411	1.0182	NaN	1	0	Median	1.1117	1.1846	NaN	1	0	Median	356270000	159780000	196490000	68876000	26737000	42140000	137350000	71244000	66106000	56713000	20938000	35775000	93326000	40859000	52468000	4330	3804	4070	26679;26680;26681;26682;26683	36481;36482;36483;36484;36485;36486	36481			6	
APVTLLDAQSLAQSFFNR	0	Unmodified	1977.032	0.031975415	1668	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.99	101.81	3	3.5312E-05	82731	160511_QHF_FH_JSI9i_3	88.427	73.657			0.92517	0.75055	NaN	1	1	Median	0.92517	0.75055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37126000	16151000	20976000	37126000	16151000	20976000	0	0	0	0	0	0	0	0	0	4331	1668	4071	26684	36487	36487			1	
APVVAIAVLDGR	0	Unmodified	1179.6976	0.69755739	2653	Q15334	LLGL1	Lethal(2) giant larvae protein homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	78.789	68.299	2	0.0010193	36257	160513_QHF_FH_JSI11Kac_5	78.934	68.105			1.0232	0.95348	2.4751	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84373	0.95348	NaN	1	0	Median	1.0259	0.98041	NaN	1	0	Median	0.84987	0.93318	NaN	1	0	Median	11638000	6017100	5620900	0	0	0	2106700	1119300	987360	6946700	3402300	3544400	2584600	1495500	1089100	4332	2653	4072	26685;26686;26687	36488	36488			1	
APWELLELR	0	Unmodified	1125.6182	0.61824444	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	86.15	85.582	2	3.157E-05	75364	160511_QHF_FH_JSI11i_2	101.72	83.497			0.99892	1.0391	3.0631	5	0	Median	1.2297	1.0664	NaN	1	0	Median	0.88474	1.0736	NaN	1	0	Median	0.99892	1.0067	NaN	1	0	Median	0.96768	1.0227	2.2468	2	0	Median	685730000	337030000	348700000	97695000	44429000	53267000	141070000	72914000	68151000	217920000	106630000	111290000	229050000	113050000	116000000	4333	1823	4073	26688;26689;26690;26691;26692	36489;36490;36491;36492;36493;36494;36495	36492			7	
APWIEQEGPEYWDR	0	Unmodified	1774.7951	0.79509919	788;967;1352;1353	P10316;P01891;P30453;P30457;P16190;P18462;P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P03989;Q04826;P30488;P30487;P30485;P30483;P30461	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	71.783	71.143	2	1.321E-14	61613	160511_QHF_FH_JSI12i_2	158.31	142.05			1.0696	1.0793	8.7763	6	0	Median	1.3485	1.151	NaN	1	0	Median	0.88406	1.06	NaN	1	0	Median	1.0874	1.035	2.6938	2	0	Median	1.0518	1.1943	11.769	2	0	Median	717660000	348610000	369060000	113240000	45201000	68040000	151280000	89699000	61584000	236220000	108180000	128040000	216920000	105530000	111390000	4334	967;788;1352;1353	4074	26693;26694;26695;26696;26697;26698	36496;36497;36498;36499;36500;36501;36502;36503;36504;36505;36506;36507;36508;36509;36510;36511;36512;36513;36514;36515	36501			20	
APWVEQEGPEYWDR	0	Unmodified	1760.7794	0.77944912	1354;2788	P30508;Q29960;P30510;Q07000;P30505;Q9TNN7;Q95604;Q29963;P10321;Q29865;P30499	HLA-C	HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	0			By MS/MS		2	0		1										1		66.056	65.495	2	0.0046662	57199	160511_QHF_FH_JSI11i_2	54.486	48.763			0.86193	0.89116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86193	0.89116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35132000	17887000	17244000	0	0	0	0	0	0	35132000	17887000	17244000	0	0	0	4335	1354;2788	4075	26699	36516	36516			1	
APWVEQEGPEYWDRETQK	1	Unmodified	2247.0233	0.023261223	1354;2788	P30508;Q29960;P30510;P30505;Q9TNN7;Q95604;Q29963;P10321;Q29865;P30499	HLA-C	HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	60.184	59.661	3	1.4666E-08	52540	160511_QHF_FH_JSI11i_3	128.1	123.34			1.0749	1.0856	2.6329	4	0	Median	1.281	1.0885	NaN	1	0	Median	0.90292	1.0945	NaN	1	0	Median	1.0956	1.0335	NaN	1	0	Median	1.0545	1.0827	NaN	1	0	Median	535300000	255600000	279690000	51819000	20862000	30957000	141770000	69989000	71785000	276060000	132310000	143750000	65646000	32439000	33207000	4336	1354;2788	4076	26700;26701;26702;26703	36517;36518;36519;36520;36521;36522;36523;36524	36518			8	
AQAAAPASVPAQAPK	1	Unmodified	1376.7412	0.74121312	1610	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	5.12	8	4	6	5	6	5				5	10	9	10	31.165	26.69	2;3	1.1247E-29	23595	160511_QHF_FH_JSI10i_1	186.81	175.65			0.98677	1.1121	10.917	34	4	Plateau	1.4335	1.1864	7.8538	5	3	Median	0.88893	1.0486	12.834	10	1	Median	1.0372	1.0029	7.2842	9	0	Median	1.0887	1.159	7.5073	10	0	Linear	15160000000	6978700000	8181200000	3965300000	1596200000	2369000000	4275500000	2198400000	2077200000	2910900000	1246700000	1664200000	4008200000	1937300000	2070800000	4337	1610	4077	26704;26705;26706;26707;26708;26709;26710;26711;26712;26713;26714;26715;26716;26717;26718;26719;26720;26721;26722;26723;26724;26725;26726;26727;26728;26729;26730;26731;26732;26733;26734;26735;26736;26737	36525;36526;36527;36528;36529;36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556;36557;36558;36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573;36574;36575;36576;36577;36578;36579;36580;36581;36582;36583;36584;36585;36586;36587;36588;36589;36590;36591;36592;36593;36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604	36556			80	
AQAAGSSVLR	0	Unmodified	958.51959	0.51959303	4049	Q96EK9	KTI12	Protein KTI12 homolog	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		19.164	11.538	2	0.033853	8347	160513_QHF_FH_JSI11Kac_4	42.864	16.171			1.2487	1.2551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2487	1.2551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3629500	1830400	1799100	0	0	0	0	0	0	3629500	1830400	1799100	0	0	0	4338	4049	4078	26738	36605	36605			1	
AQAALAVNISAAR	0	Unmodified	1254.7044	0.70443369	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	6.22	2	3	5						4	3	5	3	3	48.091	46.44	2	1.6551E-10	25410	160513_QHF_FH_JSI10Kac_6	127.87	70.269			0.99349	1.0481	11.356	10	4	Median	1.2571	1.0573	14.142	2	2	Median	0.80474	0.97191	8.7096	4	2	Median	1.2039	1.1943	13.987	2	0	Median	0.98684	1.0409	5.2356	2	0	Median	767750000	378470000	389290000	46535000	21997000	24537000	293250000	155900000	137350000	191110000	83445000	107670000	236860000	117120000	119730000	4339	1494	4079	26739;26740;26741;26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752	36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621;36622;36623;36624;36625;36626;36627;36628;36629	36629			24	
AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR	0	Unmodified	3679.8774	0.87741239	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.25	0.433	3	1								2		2		102.34	102.25	3;4	2.1901E-63	92986	160511_QHF_FH_JSI11i_1	157.86	153.79			1.3972	1.1917	14.726	4	0	Linear	1.2289	1.0331	19.334	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2546	1.2183	2.2537	2	0	Median	NaN	NaN	NaN	0	0	Median	845100000	359290000	485810000	540220000	215840000	324380000	0	0	0	304870000	143450000	161430000	0	0	0	4340	1281	4080	26753;26754;26755;26756	36630;36631;36632	36631			3	
AQADLALEK	1	Unmodified	957.51311	0.51311067	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	5.66	1					2				1		1	1	35.351	26.656	2	8.1013E-05	22729	160511_QHF_FH_JSI9i_1	98.048	48.69			0.95617	0.97317	13.92	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1342	1.0738	NaN	1	0	Median	0.80608	0.88195	NaN	1	0	Median	5196400	2262200	2934200	0	0	0	0	0	0	2430300	1034800	1395500	2766100	1227400	1538700	4341	2587	4081	26757;26758;26759	36633;36634	36633			2	
AQADLAYQLQVAK	1	Unmodified	1417.7565	0.75652884	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	54.734	54.197	2	9.5234E-07	49327	160511_QHF_FH_JSI12i_1	128.28	110.92			0.90713	0.89496	26.034	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78003	0.74448	NaN	1	0	Median	1.0549	1.0759	NaN	1	0	Median	54472000	25889000	28584000	0	0	0	0	0	0	22267000	9812300	12454000	32206000	16076000	16129000	4342	590	4082	26760;26761	36635	36635			1	
AQAELVGTADEATR	0	Unmodified	1430.7001	0.70013617	1339	P30049	ATP5D	ATP synthase subunit delta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	5.65	4	1			3	3				1	3	4	3	35.449	29.929	2	6.9841E-30	26147	160511_QHF_FH_JSI9i_1	220.23	124.08			0.90032	0.93922	12.055	10	0	Median	1.2207	0.99197	NaN	1	0	Median	0.84908	1.026	11.371	3	0	Plateau	0.95465	0.93746	6.6256	3	0	Median	1.0489	1.1479	13.953	3	0	Median	2769000000	1457200000	1311800000	646690000	317500000	329200000	657980000	359670000	298310000	757130000	407960000	349170000	707160000	372040000	335120000	4343	1339	4083	26762;26763;26764;26765;26766;26767;26768;26769;26770;26771;26772	36636;36637;36638;36639;36640;36641;36642;36643;36644;36645;36646;36647;36648;36649;36650;36651;36652;36653	36647			18	
AQAEQAALR	0	Unmodified	956.50394	0.50394296	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	7.5417	4.8724	2	0.012269	4559	160511_QHF_FH_JSI11i_1	47.849	11.148			0.961	0.97788	9.5176	6	0	Median	1.265	1.0284	NaN	1	0	Median	0.75541	0.88454	12.91	2	0	Median	1.0224	0.99755	8.2427	2	0	Median	0.94762	0.98676	NaN	1	0	Median	2313900000	1162500000	1151400000	651300000	294490000	356820000	522050000	290720000	231330000	572710000	279370000	293340000	567880000	297940000	269950000	4344	2636	4084	26773;26774;26775;26776;26777;26778	36654;36655;36656;36657;36658;36659;36660;36661	36654			8	
AQAEQQHNPAANPTMIR	0	Unmodified	1875.901	0.90097802	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	23.732	23.15	3	1.5761E-05	19749	160511_QHF_FH_JSI9i_2	83.253	72.768			1.2456	1.2526	18.293	6	0	Median	1.4225	1.2084	NaN	1	0	Median	1.0589	1.2984	NaN	1	0	Median	1.3443	1.29	22.477	2	0	Median	1.1912	1.3422	33.077	2	0	Median	363410000	162360000	201050000	39342000	14444000	24898000	58577000	28875000	29702000	163310000	71393000	91914000	102180000	47647000	54534000	4345	21	4085	26779;26780;26781;26782;26783;26784	36662;36663;36664;36665;36666;36667;36668;36669;36670;36671;36672;36673;36674	36666			13	
AQAEVEGLGK	1	Unmodified	1000.5189	0.51892433	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	28.908	20.859	2	1.2416E-05	18355	160511_QHF_FH_JSI12i_1	104.05	61.048			1.2733	1.3034	47.246	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96035	0.93325	NaN	1	1	Median	1.6882	1.8204	NaN	1	0	Median	6244200	3137300	3106900	0	0	0	0	0	0	3626500	2049700	1576800	2617700	1087600	1530100	4346	2636	4086	26785;26786;26787	36675;36676;36677	36675			3	
AQAGEGVRPSPMQLELR	0	Unmodified	1837.9469	0.94686558	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							3	3	1		50.974	49.731	2;3	5.0468E-24	43844	160511_QHF_FH_JSI10i_2	132.44	102.95			1.2597	1.0747	6.3469	5	1	Median	1.3744	1.1138	5.1946	3	0	Median	0.86934	1.0248	1.4785	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1352400000	622860000	729580000	742060000	311860000	430210000	610380000	311010000	299370000	0	0	0	0	0	0	4347	165	4087	26788;26789;26790;26791;26792;26793;26794	36678;36679;36680;36681;36682;36683;36684;36685;36686;36687	36687			10	
AQAHKALK	2	Acetyl (K)	907.52395	0.52395013	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	1	0	0	1	By matching		By MS/MS		15.7	0.471								1	2	1		2		8.5466	-0.9256	2;3	0.017615	2948	160513_QHF_FH_JSI11Kac_6	40.021	25.246			0.42303	0.41088	41.863	3	0	Plateau	1.0071	0.86444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.42351	0.41896	2.7533	2	0	Median	NaN	NaN	NaN	0	0	Median	20676000	14514000	6161800	1456600	646720	809840	0	0	0	19220000	13868000	5351900	0	0	0	4348	2707	4088	26795;26796;26797	36688;36689	36689	2641		2	
AQAKINAK	2	Acetyl (K);Acetyl (Protein N-term)	926.51853	0.5185304	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			34.962	26.226	2	0.015441	11259	160513_QHF_FH_JSI10Kac_1	46.426	36.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4349	731	4089	26798	36690	36690	361		1	
AQALAIETEAELQR	0	Unmodified	1541.8049	0.80493559	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				56.04	55.019	2	0.0021505	48335	160511_QHF_FH_JSI9i_2	72.34	56.801			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9876000	0	9876000	9876000	0	9876000	0	0	0	0	0	0	0	0	0	4350	2573	4090	26799	36691	36691			1	
AQALEDLAGFK	1	Unmodified	1161.603	0.60298831	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.275	61.64	2	8.5111E-05	55818	160511_QHF_FH_JSI11i_1	99.973	74.034			0.045216	0.048529	43.868	4	4	Median	0.029988	0.025156	NaN	1	1	Median	0.044327	0.05248	NaN	1	1	Median	0.046122	0.044876	NaN	1	1	Median	0.06727	0.071603	NaN	1	1	Median	6744600000	6616100000	128510000	1952500000	1928000000	24463000	876630000	857410000	19217000	2665400000	2610600000	54794000	1250100000	1220100000	30040000	4351	1576	4091	26800;26801;26802;26803	36692;36693;36694;36695;36696	36692			5	
AQALEELTGFR	0	Unmodified	1233.6354	0.63535107	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	65.042	63.741	2	0.00096616	54778	160511_QHF_FH_JSI12i_2	67.113	35.179			0.98287	1.0707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98287	1.0707	NaN	1	0	Median	37511000	18480000	19031000	0	0	0	0	0	0	0	0	0	37511000	18480000	19031000	4352	1576	4092	26804;26805	36697;36698	36697			2	
AQALEQAK	1	Unmodified	857.46068	0.46068117	4718	Q9H4F8	SMOC1	SPARC-related modular calcium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	8.1914	7.9095	2	0.014737	5436	160511_QHF_FH_JSI9i_1	58.716	34.513			0.91052	0.88949	14.548	7	0	Median	1.044	0.90023	17.817	2	0	Median	0.59581	0.71884	NaN	1	0	Median	0.93743	0.91667	18.634	2	0	Median	0.92388	0.94183	8.0864	2	0	Median	424020000	215870000	208150000	89590000	43275000	46315000	66971000	41375000	25596000	123930000	62126000	61802000	143530000	69092000	74433000	4353	4718	4093	26806;26807;26808;26809;26810;26811;26812	36699	36699			1	
AQALPNGVPK	1	Unmodified	993.56073	0.56072956	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	28.395	28.189	2	0.0092089	25015	160511_QHF_FH_JSI11i_1	58.981	37.21			15.043	14.517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15.043	14.517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1156600000	18136000	1138400000	0	0	0	0	0	0	1156600000	18136000	1138400000	0	0	0	4354	4582	4094	26813;26814	36700;36701	36700			2	
AQALRDNSTMGYMAAK	1	Unmodified	1726.8131	0.81307421	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	3	1		33.96	32.861	2;3	3.5532E-05	28604	160511_QHF_FH_JSI9i_2	88.73	82.001			1.1928	1.0354	27.161	7	0	Median	1.1772	0.98288	5.4761	3	0	Plateau	1.3063	1.5122	11.747	3	0	Median	0.98877	0.96225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	868560000	332910000	535650000	419760000	169660000	250100000	385780000	137610000	248160000	63028000	25641000	37387000	0	0	0	4355	880	4095	26815;26816;26817;26818;26819;26820;26821	36702;36703;36704;36705;36706;36707;36708;36709;36710;36711	36708			10	
AQALRDNSTMGYMMAK	1	Unmodified	1786.8164	0.81644503	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	3	1	1	43.222	42.245	3	8.0027E-05	34647	160511_QHF_FH_JSI9i_3	78.244	59.649			0.92939	0.81058	52.682	6	5	Median	0.91284	0.7327	NaN	1	0	Median	1.5114	1.7264	68.869	3	3	Plateau	0.94624	0.89673	NaN	1	1	Median	0.4379	0.44756	NaN	1	1	Median	876000000	486200000	389800000	221430000	114220000	107210000	513340000	288970000	224370000	83842000	43612000	40230000	57386000	39401000	17986000	4356	898	4096	26822;26823;26824;26825;26826;26827	36712;36713;36714;36715;36716;36717;36718	36716			7	
AQALSEEEFQR	0	Acetyl (Protein N-term)	1348.6259	0.62590859	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			56.578	56.184	2	1.0076E-05	50687	160511_QHF_FH_JSI10i_1	104.42	96.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4357	2841	4097	26828	36719	36719			1	
AQANVMLFLEEK	1	Unmodified	1391.7119	0.71188683	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	0			By MS/MS		2	0		1										1		81.787	81.167	2	0.056752	71180	160511_QHF_FH_JSI11i_2	42.788	30.173			24.555	24.941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24.555	24.941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	180420000	7202900	173220000	0	0	0	0	0	0	180420000	7202900	173220000	0	0	0	4358	682	4098	26829	36720	36720			1	
AQAQAAAEK	1	Unmodified	886.45084	0.45084476	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.02	4				1	2	1			1	1	2	4	4.8909	1.0894	2	4.2106E-06	2296	160511_QHF_FH_JSI11i_1	134.25	105.73			1.05	1.0997	21.696	8	5	Median	0.76728	0.61728	NaN	1	1	Median	0.95481	1.1273	NaN	1	1	Median	1.1113	1.0825	3.5733	2	1	Median	1.05	1.1285	8.3297	4	2	Median	1789400000	898160000	891220000	240260000	154580000	85673000	515580000	263420000	252160000	532620000	232640000	299980000	500930000	247520000	253410000	4359	2636	4099	26830;26831;26832;26833;26834;26835;26836;26837	36721;36722;36723;36724;36725;36726	36721			6	
AQAQLQK	1	Unmodified	785.43955	0.43955179	3408	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	0	By matching		By MS/MS		13	0						2				1		1		13.023	0.4591	2	0.053961	2965	160513_QHF_FH_JSI11Kac_3	50.12	12.474			1.5029	1.3289	34.108	2	0	Median	2.1076	1.6914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0716	1.0441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10978000	3806800	7171400	8027100	2658200	5368900	0	0	0	2951100	1148600	1802500	0	0	0	4360	3408	4100	26838;26839	36727	36727			1	
AQAREEKHQK	2	Acetyl (K)	1265.6476	0.64764709	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	1	0	0	2			By MS/MS		16	0									1			1		4.5872	-4.774	3	0.0074785	1262	160513_QHF_FH_JSI11Kac_6	60.434	34.997			0.25299	0.24953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25299	0.24953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33478000	26884000	6593500	0	0	0	0	0	0	33478000	26884000	6593500	0	0	0	4361	1073;1426;1270	4101	26840	36728	36728	909;910;1171		1	
AQASGSAHSTPNLGHPEDSGVSAPAPGK	1	Unmodified	2626.2372	0.23717018	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	29.971	29.565	3;4	1.1244E-36	25599	160511_QHF_FH_JSI11i_3	165.48	154.94			1.0034	0.95044	8.8372	5	1	Median	1.208	1.0182	NaN	1	0	Median	0.68415	0.83549	NaN	1	0	Median	0.99616	0.93186	2.7921	2	1	Median	1.0282	1.0413	NaN	1	0	Median	243510000	121960000	121550000	40055000	19015000	21040000	38129000	21779000	16351000	130440000	61578000	68857000	34895000	19591000	15304000	4362	482	4102	26841;26842;26843;26844;26845	36729;36730;36731;36732;36733;36734;36735;36736;36737	36731			9	
AQASSIPVGSR	0	Unmodified	1071.5673	0.5672715	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.98	4	2				2	2			3	2	3	2	21.615	17.9	2	7.5096E-06	15437	160511_QHF_FH_JSI12i_1	109.66	62.061			0.82798	0.83077	15.603	9	2	Median	1.1266	0.94456	16.955	2	1	Median	0.66604	0.78189	8.5579	2	0	Median	0.82798	0.8138	13.134	3	1	Median	0.89577	0.95009	16.758	2	0	Median	686300000	399370000	286930000	154590000	76947000	77646000	168210000	110390000	57824000	200280000	122870000	77414000	163210000	89165000	74044000	4363	4266	4103	26846;26847;26848;26849;26850;26851;26852;26853;26854;26855	36738;36739;36740;36741;36742;36743;36744;36745;36746;36747;36748	36739			11	
AQATPDHVLFMLLNAK	1	Unmodified	1767.9342	0.93417563	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	2	1	3	3	95.67	91.937	3	5.1652E-24	45249	160513_QHF_FH_JSI11Kac_6	150.76	131.19			0.94714	0.9091	18.062	9	0	Median	1.1596	0.99472	10.323	2	0	Median	0.86664	1.0317	NaN	1	0	Median	0.94714	0.9091	20.679	3	0	Plateau	0.88851	0.92897	18.475	3	0	Plateau	875740000	404900000	470830000	200060000	80230000	119830000	157990000	70693000	87300000	350530000	166200000	184330000	167150000	87778000	79373000	4364	5202	4104	26856;26857;26858;26859;26860;26861;26862;26863;26864	36749;36750;36751;36752;36753;36754;36755;36756;36757;36758;36759;36760	36751			12	
AQAVHPGYGFLSENK	1	Unmodified	1616.7947	0.79470526	829	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.579	41.468	3	0.033164	36527	160511_QHF_FH_JSI11i_3	42.218	37.417			1.3721	1.3638	4.833	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3722	1.318	NaN	1	0	Median	1.3721	1.4112	NaN	1	0	Median	120210000	54126000	66084000	0	0	0	0	0	0	55129000	23504000	31625000	65082000	30622000	34460000	4365	829	4105	26865;26866	36761;36762	36761			0	
AQAVLEEDHYGMEDVK	1	Unmodified	1832.8251	0.82507869	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	45.696	44.922	2;3	1.8413E-22	38543	160511_QHF_FH_JSI11i_2	176.91	163.01			1.0006	1.0316	11.61	12	0	Median	1.3781	1.1212	15.822	3	0	Median	0.94393	1.128	17.849	3	0	Median	1.0005	0.96622	1.6974	3	0	Median	1.0008	1.0467	6.9903	3	0	Median	2335100000	1128800000	1206300000	345430000	153320000	192120000	686820000	320220000	366600000	607000000	331250000	275760000	695810000	324000000	371810000	4366	1459	4106	26867;26868;26869;26870;26871;26872;26873;26874;26875;26876;26877;26878	36763;36764;36765;36766;36767;36768;36769;36770;36771;36772;36773;36774;36775;36776;36777;36778;36779;36780;36781;36782;36783;36784	36783			22	
AQAVLEEDHYGMEDVKK	2	Unmodified	1960.92	0.9200417	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	38.941	38.549	3;4	1.4787E-11	32835	160511_QHF_FH_JSI12i_3	149.57	138.3			0.94997	0.96305	32.648	7	2	Median	NaN	NaN	NaN	0	0	Median	1.1626	1.4267	46.385	2	2	Median	0.94947	0.87879	21.908	3	0	Median	0.9599	0.96238	0.098274	2	0	Median	472560000	249840000	222720000	0	0	0	65489000	37637000	27852000	161830000	87705000	74124000	245240000	124500000	120740000	4367	1459	4107	26879;26880;26881;26882;26883;26884;26885	36785;36786;36787;36788;36789;36790;36791;36792;36793;36794;36795	36795			10	
AQAVLQQYQHLPSFR	0	Unmodified	1784.9322	0.93220179	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			62.217	60.7	3	0.00039943	50853	160511_QHF_FH_JSI10i_3	58.079	46.639			0.74208	0.86664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74208	0.86664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25215000	15115000	10100000	0	0	0	25215000	15115000	10100000	0	0	0	0	0	0	4368	5329	4108	26886	36796;36797;36798	36798			3	
AQAVSEDAGGNEGR	0	Unmodified	1359.6015	0.60148476	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.54	4	1	1		3	3				1	3	4	4	9.9929	5.9137	2	4.867E-40	6262	160511_QHF_FH_JSI10i_1	203.51	175.5			0.94515	0.98468	7.3097	11	1	Median	1.2172	0.96071	NaN	1	0	Median	0.85849	0.99241	4.1395	3	0	Median	0.99959	0.97715	10.457	3	0	Median	0.97218	1.0259	8.4211	4	1	Median	4666500000	2405600000	2260900000	1119300000	487270000	632010000	1203900000	685800000	518080000	1356400000	695040000	661380000	986960000	537500000	449460000	4369	1867	4109	26887;26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898	36799;36800;36801;36802;36803;36804;36805;36806;36807;36808;36809;36810;36811;36812;36813;36814;36815;36816;36817;36818;36819	36807			21	
AQAVTQPVPLANKPVPAQSTFPSK	2	Unmodified	2475.3486	0.34855853	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				58.391	57.393	3	1.3681E-05	50440	160511_QHF_FH_JSI9i_2	60.398	48.776			0.84255	0.72534	NaN	1	1	Median	0.84255	0.72534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11828000	9484000	2344200	11828000	9484000	2344200	0	0	0	0	0	0	0	0	0	4370	1676	4110	26899	36820	36820			1	
AQAYQTGK	1	Unmodified	865.42938	0.42938104	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	5.87	4	1	4		3	3	2		2	3	6	5	5	5.8596	1.7024	2	1.0638E-06	2181	160513_QHF_FH_JSI11Kac_3	136.11	110			1.0214	1.0968	46.734	18	0	Median	1.2	1.0464	95.272	3	0	Median	1.0038	1.1549	32.746	6	0	Median	1.2407	1.2264	18.888	5	0	Median	0.88387	0.93598	34.995	4	0	Median	18426000000	8787400000	9638400000	5241000000	2325600000	2915400000	6235900000	3209800000	3026100000	6177300000	2935200000	3242100000	771670000	316840000	454840000	4371	1057	4111	26900;26901;26902;26903;26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915;26916;26917;26918	36821;36822;36823;36824;36825;36826;36827;36828;36829;36830;36831;36832;36833;36834;36835;36836;36837;36838;36839;36840;36841;36842	36826			22	
AQAYQTGKDISTNYYASQK	2	Acetyl (K)	2178.0229	0.022926872	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	57.336	48.162	3	0.049118	25531	160513_QHF_FH_JSI12Kac_3	35.389	18.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1447200	1447200	0	0	0	0	0	0	0	0	0	0	1447200	1447200	0	4372	1057	4112	26919	36843	36843			1	
AQCEDDLAEK	1	Unmodified	1177.4921	0.49211723	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	12.837	12.319	2	6.0002E-11	9949	160511_QHF_FH_JSI10i_1	146.11	123.33			1.1032	1.0472	49.042	5	2	Median	1.1227	0.94417	76.155	2	2	Median	0.79766	0.92675	NaN	1	0	Median	1.1032	1.0472	NaN	1	0	Median	1.859	1.9087	NaN	1	0	Median	219330000	99543000	119790000	50671000	22072000	28600000	48973000	22057000	26916000	72228000	35500000	36729000	47459000	19915000	27543000	4373	2307	4113	26920;26921;26922;26923;26924	36844;36845;36846;36847;36848;36849;36850	36847			7	
AQCPIVER	0	Unmodified	971.48585	0.48585006	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.6	6.05	1	2					2				1	1	3	16.01	15.334	2	0.0031291	12380	160511_QHF_FH_JSI12i_2	81.297	52.148			1.0424	0.79737	19.969	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.64838	0.79737	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85486	0.91933	25.739	2	2	Median	975750000	552390000	423360000	0	0	0	163230000	100920000	62319000	0	0	0	812520000	451470000	361040000	4374	1594	4114	26925;26926;26927;26928;26929	36851;36852;36853;36854;36855	36851			5	
AQCYMDTEQYEEAVRDYEK	1	Unmodified	2426.9995	0.99949059	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	64.074	63.59	3	2.7682E-05	57684	160511_QHF_FH_JSI11i_1	75.239	72.141			0.94092	0.89754	31.666	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76305	0.86614	NaN	1	0	Median	0.94092	0.89754	NaN	1	0	Median	1.4361	1.5246	NaN	1	0	Median	119390000	63190000	56197000	0	0	0	31194000	18531000	12663000	48879000	26356000	22523000	39314000	18303000	21011000	4375	4294	4115	26930;26931;26932	36856;36857;36858;36859;36860;36861	36858			6	
AQDALPFFMMHLGYEK	1	Unmodified	1896.8903	0.8902619	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.43	6.57		1	3						3	1		2	4	93.28	88.664	3	3.417E-05	86915	160511_QHF_FH_JSI11i_3	81.428	71.505			0.97926	0.96785	24.326	6	1	Median	1.1476	1.0042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92142	0.87078	28.024	2	0	Median	0.85941	0.93287	28.311	3	1	Median	349240000	153710000	195530000	80839000	36498000	44341000	0	0	0	102980000	52800000	50176000	165420000	64410000	101010000	4376	2485	4116	26933;26934;26935;26936;26937;26938;26939	36862;36863;36864;36865;36866;36867	36863			6	
AQDEAFALQDVPLSSVVR	0	Unmodified	1943.9953	0.99525556	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	91.271	90.864	2;3	1.0077E-11	82807	160511_QHF_FH_JSI12i_1	180.62	164.48			1.0205	1.0096	10.724	8	0	Median	1.3323	1.0812	10.004	2	0	Median	0.85903	1.0223	12.941	2	0	Median	1.0205	0.9693	6.0673	2	0	Median	1.0347	1.085	18.162	2	0	Median	422200000	205740000	216470000	64683000	25715000	38968000	150210000	81366000	68844000	109640000	49022000	60621000	97667000	49632000	48035000	4377	5575	4117	26940;26941;26942;26943;26944;26945;26946;26947	36868;36869;36870;36871;36872;36873	36871			6	
AQDEGLLSDVVPFK	1	Unmodified	1516.7773	0.77732386	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	87.988	87.544	2;3	2.771E-22	79688	160511_QHF_FH_JSI12i_1	212.59	183.86			0.91937	0.86894	12.38	8	2	Median	1.0746	0.90346	16.062	2	1	Median	0.79269	0.93051	17.397	2	1	Median	0.88167	0.85814	9.4832	2	0	Median	0.84799	0.89587	18.843	2	0	Median	788210000	430080000	358130000	144780000	68475000	76309000	234490000	142070000	92413000	207520000	106910000	100610000	201420000	112630000	88794000	4378	1848	4118	26948;26949;26950;26951;26952;26953;26954;26955	36874;36875;36876;36877;36878;36879;36880;36881;36882;36883;36884;36885	36879			12	
AQDEGLLSDVVPFKVPGK	2	Unmodified	1898.0149	0.014928368	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	88.516	88.461	3	5.7272E-07	76747	160511_QHF_FH_JSI12i_3	100.02	89.388			1.0143	0.98076	33.043	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83452	0.77641	NaN	1	0	Median	1.2327	1.2389	NaN	1	0	Median	72452000	36173000	36279000	0	0	0	0	0	0	20004000	11010000	8993700	52448000	25162000	27285000	4379	1848	4119	26956;26957	36886;36887	36887			2	
AQDGAAMEMQPLK	1	Unmodified	1388.6428	0.64282099	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	41.455	40.71	2	8.1948E-06	36969	160511_QHF_FH_JSI12i_1	130.69	119.47			0.71892	0.74981	9.5274	3	3	Median	0.97421	0.81148	NaN	1	1	Median	0.57498	0.67128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71892	0.74981	NaN	1	1	Median	500810000	257130000	243670000	165070000	63989000	101080000	169890000	92347000	77547000	0	0	0	165850000	100800000	65048000	4380	1168	4120	26958;26959;26960	36888;36889;36890	36888			3	
AQDGDFIFSK	1	Unmodified	1126.5295	0.52948901	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	51.571	50.812	2	0.0067533	45934	160511_QHF_FH_JSI11i_1	61.958	44.718			1.281	1.0637	22.238	3	2	Median	1.281	1.0637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99945	0.94607	NaN	1	1	Median	1.4054	1.4546	NaN	1	1	Median	183840000	86622000	97215000	45583000	18480000	27103000	0	0	0	65298000	38309000	26990000	72957000	29834000	43123000	4381	5207	4121	26961;26962;26963	36891;36892;36893	36891			3	
AQDGSHPLSLQDLIEK	1	Unmodified	1749.8897	0.88972785	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	3	2	2	70.996	70.49	2;3	5.7283E-15	60837	160511_QHF_FH_JSI12i_3	173.68	141.83			1.0254	1.0515	12.454	10	4	Median	1.2937	1.1	14.709	3	2	Median	0.79031	0.95215	6.3971	3	2	Median	1.0399	0.98397	14.991	2	0	Median	1.018	1.0245	3.4158	2	0	Median	772850000	392550000	380300000	219420000	97651000	121770000	381510000	211350000	170160000	96558000	47954000	48604000	75358000	35592000	39766000	4382	636	4122	26964;26965;26966;26967;26968;26969;26970;26971;26972;26973	36894;36895;36896;36897;36898;36899;36900;36901;36902;36903;36904;36905;36906;36907	36907			14	
AQDIQCGLQSR	0	Unmodified	1274.6037	0.60373336	3781	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	20.972	20.456	2	0.00026403	17610	160511_QHF_FH_JSI10i_1	78.136	55.9			1.0838	1.053	10.261	4	2	Median	1.1949	1.0199	NaN	1	1	Median	0.92376	1.0871	NaN	1	0	Median	0.98303	0.94661	NaN	1	0	Median	1.2024	1.2061	NaN	1	1	Median	148370000	73721000	74647000	28334000	13226000	15107000	46744000	26639000	20105000	48288000	25134000	23153000	25003000	8721500	16281000	4383	3781	4123	26974;26975;26976;26977;26978;26979	36908;36909;36910;36911;36912;36913;36914	36911			7	
AQDITLPHLCSVLLAFAR	0	Unmodified	2024.0877	0.087716155	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	95.394	85.952	3	0.00010515	46671	160513_QHF_FH_JSI12Kac_6	110.6	97.177			0.99149	1.0744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99149	1.0744	NaN	1	1	Median	58885000	27872000	31013000	0	0	0	0	0	0	0	0	0	58885000	27872000	31013000	4384	3955	4124	26980	36915	36915			1	
AQDLFLDGVPLRK	1	Unmodified	1470.8195	0.81946344	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	66.532	66.024	3	3.3454E-05	57013	160511_QHF_FH_JSI12i_3	107.35	87.594			0.80793	0.8646	40.899	4	4	Median	0.59668	0.51994	NaN	1	1	Median	0.56011	0.68508	NaN	1	1	Median	1.324	1.256	NaN	1	1	Median	1.094	1.0912	NaN	1	1	Median	258420000	131820000	126610000	31620000	17993000	13626000	38747000	25470000	13277000	83718000	37902000	45816000	104340000	50452000	53885000	4385	3009	4125	26981;26982;26983;26984	36916;36917;36918;36919	36919			4	
AQDLPLK	1	Unmodified	783.44905	0.44905385	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	26.401	24.269	2	0.017769	21551	160511_QHF_FH_JSI12i_1	60.972	19.08			0.98542	1.0785	10.689	5	0	Median	1.1453	0.95661	NaN	1	0	Median	0.93393	1.1197	NaN	1	0	Median	1.2317	1.2034	NaN	1	0	Median	0.94032	1.0037	10.154	2	0	Median	568470000	295390000	273080000	147820000	77618000	70205000	127980000	69532000	58451000	141800000	63820000	77978000	150860000	84419000	66446000	4386	4399	4126	26985;26986;26987;26988;26989	36920;36921;36922;36923;36924;36925	36920			6	
AQDLPLKK	2	Unmodified	911.54402	0.54401687	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	16.374	16.4	3	0.021063	13052	160511_QHF_FH_JSI12i_3	29.162	18.452			1.1734	1.1287	21.504	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0501	0.96946	NaN	1	0	Median	1.3112	1.314	NaN	1	0	Median	129390000	53599000	75791000	0	0	0	0	0	0	38732000	19368000	19364000	90657000	34231000	56427000	4387	4399	4127	26990;26991	36926	36926			1	
AQDPDQLR	0	Unmodified	941.45666	0.45665842	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.02	10.636	2	0.00095149	8448	160511_QHF_FH_JSI10i_1	96.027	48.178			1.0872	1.1246	6.9874	4	2	Median	1.3709	1.1138	NaN	1	1	Median	1.0639	1.2396	NaN	1	0	Median	1.0684	1.0467	NaN	1	1	Median	1.1063	1.1356	NaN	1	0	Median	812200000	379210000	432980000	173790000	72062000	101730000	242800000	124800000	117990000	222480000	100830000	121650000	173130000	81524000	91607000	4388	5119	4128	26992;26993;26994;26995	36927;36928;36929;36930;36931;36932	36931			6	
AQDPSEVLTMLTNETGFEISSSDATVK	1	Unmodified	2869.3539	0.353899	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	101.77	101.67	3	1.4267E-58	92252	160511_QHF_FH_JSI12i_1	200.09	187.75			0.9425	0.94408	15.465	4	0	Median	0.91798	0.76152	NaN	1	0	Median	0.73206	0.85881	NaN	1	0	Median	1.0851	1.0472	NaN	1	0	Median	0.96768	1.0378	NaN	1	0	Median	1230900000	665290000	565590000	192150000	86514000	105640000	358450000	217550000	140910000	304350000	154970000	149380000	375920000	206260000	169660000	4389	2324	4129	26996;26997;26998;26999	36933;36934;36935	36933			3	
AQDQGEKENPMR	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1501.6467	0.64672039	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	1	1			By MS/MS		11	0				1								1		22.514	15.11	2	0.014415	7011	160513_QHF_FH_JSI11Kac_1	43.512	36.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4390	2038	4130	27000	36936	36936	2089	1700	1	
AQDQGEKENPMR	1	Acetyl (K);Acetyl (Protein N-term)	1485.6518	0.65180577	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		37.841	29.071	2	1.7155E-05	12172	160513_QHF_FH_JSI11Kac_1	100.55	92.021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4391	2038	4130	27001	36937	36937	2089		1	
AQDSSLHMPER	0	Unmodified	1269.5772	0.57718426	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	20.377	19.579	3	0.042622	16787	160511_QHF_FH_JSI10i_2	13.801	10.269			1.01	1.0563	11.168	4	0	Median	1.5432	1.3078	NaN	1	0	Median	0.83623	1.0377	NaN	1	0	Median	1.0738	1.0753	NaN	1	0	Median	0.9499	1.0344	NaN	1	0	Median	206940000	109620000	97322000	39457000	17855000	21603000	68885000	40375000	28510000	73293000	35932000	37361000	25309000	15460000	9848500	4392	4361	4131	27002;27003;27004;27005	36938	36938			1	
AQDSVLR	0	Unmodified	787.41882	0.41881635	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	2	1	1	10.515	10.059	2	0.011216	7922	160511_QHF_FH_JSI10i_1	62.659	19.592			1.0129	1.0889	16.906	4	0	Median	0.94711	0.7871	NaN	1	0	Median	0.90557	1.1234	NaN	1	0	Median	1.1119	1.0653	NaN	1	0	Median	1.0833	1.113	NaN	1	0	Median	443210000	195950000	247250000	77119000	36834000	40285000	27617000	14165000	13451000	149920000	62700000	87223000	188550000	82256000	106300000	4393	4989	4132	27006;27007;27008;27009;27010	36939;36940	36940			2	
AQDVLVQEMEVVK	1	Unmodified	1486.7701	0.77012999	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.6	5.2	4						1			1		2	2	69.582	69	2	1.1882E-05	62951	160511_QHF_FH_JSI12i_1	134.49	115.82			0.71357	0.73269	47.002	4	4	Linear	0.29477	0.23831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45856	0.44595	62.918	2	2	Median	0.37425	0.39303	NaN	1	1	Median	787190000	597110000	190080000	231640000	187050000	44592000	0	0	0	353210000	262680000	90535000	202340000	147380000	54955000	4394	4271	4133	27011;27012;27013;27014;27015	36941;36942;36943;36944;36945	36943			5	
AQEAAATQLGLK	1	Unmodified	1199.651	0.65100113	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.74	33.159	2	0.0083797	29939	160511_QHF_FH_JSI12i_1	59.265	18.913			0.1999	0.21405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1999	0.21405	NaN	1	1	Median	44200000	39031000	5169400	0	0	0	0	0	0	0	0	0	44200000	39031000	5169400	4395	1701	4134	27016	36946	36946			1	
AQEAEAGVLGNEK	1	Unmodified	1314.6416	0.64155866	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.294	22.778	2	1.0944E-13	19575	160511_QHF_FH_JSI9i_1	129.84	69.402			0.72655	0.75873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72655	0.75873	NaN	1	0	Median	30496000	16474000	14022000	0	0	0	0	0	0	0	0	0	30496000	16474000	14022000	4396	3517	4135	27017;27018;27019;27020	36947;36948;36949;36950	36950			4	
AQEALDFYGEVR	0	Unmodified	1396.6623	0.6622941	1911	P60484	PTEN	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	58.284	57.758	2	0.00027405	52354	160511_QHF_FH_JSI11i_1	76.332	57.017			0.41199	0.45585	45.013	2	2	Median	NaN	NaN	NaN	0	0	Median	0.2828	0.33158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60019	0.62669	NaN	1	1	Median	88520000	59636000	28884000	0	0	0	42539000	29712000	12826000	0	0	0	45982000	29924000	16058000	4397	1911	4136	27021;27022;27023	36951;36952;36953	36951			3	
AQEALSHTEQSK	1	Unmodified	1327.6368	0.63680763	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	7.084	6.6413	2	0.00024285	4540	160511_QHF_FH_JSI9i_2	93.058	31.704			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4712200	0	4712200	4712200	0	4712200	0	0	0	0	0	0	0	0	0	4398	481	4137	27024;27025	36954;36955	36955			2	
AQEAPGQAEPPAAAEVQGAGNENEPR	0	Unmodified	2587.1899	0.18988563	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.9	8				3					2	1	4	4	41.467	39.119	2;3	2.1188E-26	35417	160511_QHF_FH_JSI11i_1	139.67	139.46			1.1281	1.0874	11.772	10	2	Median	1.2987	1.0608	6.9329	2	0	Median	0.8998	1.0844	NaN	1	0	Median	1.1281	1.0905	16.595	4	2	Median	1.0421	1.0904	11.17	3	0	Median	1273700000	627400000	646350000	230650000	109900000	120750000	269260000	140730000	128530000	502530000	239920000	262620000	271310000	136850000	134450000	4399	198	4138	27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036	36956;36957;36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968;36969;36970;36971;36972;36973;36974;36975;36976;36977;36978;36979;36980	36958			25	
AQEAPGQAEPPAAAEVQGAGNENEPREADK	1	Unmodified	3030.3915	0.39149857	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.985	36.373	3	1.8396E-12	32445	160511_QHF_FH_JSI10i_1	77.51	75.197			1.3323	1.3951	15.287	4	0	Median	1.3354	1.0968	NaN	1	0	Median	1.3292	1.5329	NaN	1	0	Median	1.525	1.4904	NaN	1	0	Median	1.277	1.306	NaN	1	0	Median	281910000	112110000	169800000	53173000	21633000	31541000	85151000	32049000	53102000	57544000	21548000	35996000	86046000	36883000	49163000	4400	198	4139	27037;27038;27039;27040	36981;36982;36983;36984;36985;36986;36987;36988;36989;36990;36991	36988			11	
AQEEADYIEWLK	1	Unmodified	1493.7038	0.70382456	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.324	75.84	2	4.7809E-05	69014	160511_QHF_FH_JSI11i_1	99.5	62.156			0.85562	0.87848	11.619	4	0	Linear	1.1097	0.89098	NaN	1	0	Median	0.94328	1.0971	NaN	1	0	Median	0.88701	0.85795	NaN	1	0	Median	0.84802	0.86615	NaN	1	0	Median	196140000	105650000	90496000	39152000	17627000	21524000	49850000	25596000	24254000	52149000	28641000	23509000	54990000	33781000	21209000	4401	3580	4140	27041;27042;27043;27044	36992;36993;36994	36992			3	
AQEEAERLEADR	0	Unmodified	1415.6641	0.66408501	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.615	3	8	2							2	3	3	5	14.848	14.407	2;3	4.9328E-23	11396	160511_QHF_FH_JSI12i_3	148.96	127.71			0.99954	0.99027	20.405	13	0	Median	1.5344	1.3023	7.7017	2	0	Median	0.64453	0.80197	19.561	3	0	Median	0.84898	0.87692	6.269	3	0	Plateau	1.0717	1.1925	12.044	5	0	Median	2126900000	1039400000	1087500000	352000000	139660000	212340000	466430000	274610000	191820000	617210000	333880000	283330000	691250000	291270000	399990000	4402	1073	4141	27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057	36995;36996;36997;36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008	37008			14	
AQEEEDVRDYNLTEEQK	1	Acetyl (Protein N-term)	2136.9447	0.94473613	3427	Q8IWT0	ZBTB8OS	Protein archease	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	49.001	48.324	2;3	4.5801E-05	43911	160511_QHF_FH_JSI12i_1	87.083	60.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79350000	22975000	56375000	17108000	0	17108000	10254000	0	10254000	15243000	0	15243000	36745000	22975000	13770000	4403	3427	4142	27058;27059;27060;27061;27062	37009;37010;37011;37012;37013	37011			5	
AQEEPPAK	1	Unmodified	868.42905	0.42904669	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	6.6168	3.9888	2	0.023709	2320	160513_QHF_FH_JSI11Kac_2	54.157	38.003			1.0197	1.0505	11.615	6	0	Median	1.2426	1.0224	NaN	1	0	Median	0.93443	1.1059	NaN	1	0	Median	1.1169	1.0862	0.89293	2	0	Median	0.82679	0.86786	5.3857	2	0	Median	770770000	381330000	389440000	187670000	86324000	101340000	191640000	95981000	95655000	169990000	85446000	84547000	221470000	113580000	107900000	4404	5380	4143	27063;27064;27065;27066;27067;27068	37014;37015;37016	37015			2	
AQEEVTK	1	Unmodified	803.4025	0.40249759	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.3514	5.0359	2	0.004105	2936	160511_QHF_FH_JSI11i_1	100.19	8.2818			0.7774	0.80072	6.1688	4	0	Median	1.0907	0.89082	NaN	1	0	Median	0.67215	0.79799	NaN	1	0	Median	0.78088	0.7726	NaN	1	0	Median	0.77393	0.80346	NaN	1	0	Median	1744000000	965770000	778200000	309580000	152270000	157310000	460000000	264330000	195680000	431000000	236480000	194520000	543380000	312690000	230700000	4405	679	4144	27069;27070;27071;27072	37017;37018;37019;37020;37021;37022	37018			6	
AQEEYEQIQAK	1	Unmodified	1335.6307	0.63065962	5175	Q9P031	CCDC59	Thyroid transcription factor 1-associated protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	22.884	22.354	2	2.9392E-05	19665	160511_QHF_FH_JSI12i_1	134.68	100.72			0.78454	0.85246	30.364	5	5	Median	0.67351	0.54949	NaN	1	1	Median	0.78454	0.89525	NaN	1	1	Median	0.71717	0.67576	NaN	1	1	Median	1.0091	1.0229	25.778	2	2	Median	138170000	81081000	57084000	26891000	16858000	10033000	26424000	14389000	12036000	23917000	14657000	9260200	60932000	35177000	25755000	4406	5175	4145	27073;27074;27075;27076;27077;27078	37023;37024;37025;37026;37027;37028	37025			6	
AQEFVNCK	1	Acetyl (Protein N-term)	1036.4648	0.46478027	1446	P35754	GLRX	Glutaredoxin-1	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS		4.33	4.71	2			1						1	1	1		44.09	40.445	2	0.0041263	16203	160513_QHF_FH_JSI11Kac_1	45.718	41.402			0.70636	0.79355	16.939	3	0	Median	1.188	0.96124	NaN	1	0	Median	0.70636	0.79355	NaN	1	0	Median	0.68767	0.68572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56178000	29333000	26845000	20648000	7667200	12980000	33426000	20377000	13048000	2104400	1288800	815610	0	0	0	4407	1446	4146	27079;27080;27081	37029;37030	37030			1	
AQEGGGSEVFQELK	1	Unmodified	1477.7049	0.7048872	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	4.64	1					3	2				2	2	2	58.504	48.522	2	1.064E-18	43263	160511_QHF_FH_JSI11i_1	143.98	105.67			0.99641	1.122	11.605	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86736	1.0254	9.6046	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1099	1.2057	7.0339	2	0	Median	42625000	21497000	21128000	0	0	0	18184000	10031000	8153300	0	0	0	24440000	11466000	12974000	4408	3614	4147	27082;27083;27084;27085;27086;27087	37031;37032;37033;37034;37035;37036;37037;37038;37039	37031			9	
AQEIAMQNR	0	Unmodified	1059.5131	0.51312744	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.841	13.574	2	0.0036744	11212	160511_QHF_FH_JSI10i_1	69.812	57.605			0.89915	0.95971	6.7104	3	2	Median	NaN	NaN	NaN	0	0	Median	0.81507	0.95971	NaN	1	1	Median	1.0887	1.0496	NaN	1	1	Median	0.89915	0.92035	NaN	1	0	Median	427050000	230360000	196690000	0	0	0	145530000	71992000	73541000	147980000	74738000	73242000	133530000	83628000	49906000	4409	4852	4148	27088;27089;27090	37040;37041;37042	37042			3	
AQEIDGQALLLLK	1	Unmodified	1410.8082	0.80823006	3632;3443	Q8NDX5;Q8IXK0	PHC3;PHC2	Polyhomeotic-like protein 3;Polyhomeotic-like protein 2	no	no	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	80.818	80.384	2	0.023618	73335	160511_QHF_FH_JSI12i_1	59.198	46.962			1.029	1.0107	2.6663	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0377	0.99186	NaN	1	0	Median	1.0204	1.03	NaN	1	0	Median	39211000	17270000	21941000	0	0	0	0	0	0	21465000	9345300	12120000	17746000	7924800	9821500	4410	3632;3443	4149	27091;27092	37043	37043			0	
AQEIDRSNEFK	1	Unmodified	1335.6419	0.64189301	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	2	0		2										1	1	16.859	16.243	3	0.025205	13043	160511_QHF_FH_JSI11i_2	33.761	20.081			0.73796	0.77807	40.722	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58492	0.58339	NaN	1	0	Median	0.93105	1.0377	NaN	1	0	Median	89055000	51230000	37825000	0	0	0	0	0	0	52468000	37401000	15067000	36587000	13829000	22758000	4411	1277	4150	27093;27094	37044	37044			1	
AQEILAR	0	Unmodified	799.4552	0.45520186	1032	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14	0.816						2	2	2			3		3	17.631	9.2349	2	0.008944	7166	160513_QHF_FH_JSI10Kac_4	86.086	13.948			0.85768	0.98558	12.739	6	0	Median	NaN	NaN	NaN	0	0	Median	0.82556	0.96789	10.392	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0177	1.1016	12.03	3	0	Median	159940000	82741000	77203000	0	0	0	75417000	39766000	35651000	0	0	0	84527000	42975000	41552000	4412	1032	4151	27095;27096;27097;27098;27099;27100	37045;37046;37047;37048;37049;37050;37051	37045			7	
AQEILSQLPIK	1	Unmodified	1238.7234	0.72343779	1446	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	2	2	69.922	67.752	2	9.2713E-07	61509	160511_QHF_FH_JSI10i_1	119.53	90.055			0.61258	0.67197	39.949	7	4	Median	0.5108	0.42361	1.0486	2	1	Median	0.56214	0.67197	NaN	1	1	Median	0.8633	0.85809	50.088	2	1	Median	0.84371	0.88932	8.0017	2	1	Median	468420000	296420000	172000000	89010000	54113000	34896000	130060000	98869000	31188000	120660000	81699000	38962000	128690000	61739000	66952000	4413	1446	4152	27101;27102;27103;27104;27105;27106;27107	37052;37053;37054;37055;37056;37057;37058;37059	37056			7	
AQELDALDNSHPIEVSVGHPSEVDEIFDAISYSK	1	Unmodified	3710.7588	0.75877985	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	101.23	101.17	4	9.0842E-101	87602	160511_QHF_FH_JSI12i_3	231.71	211.53			1.133	1.1984	27.337	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88277	0.98779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.454	1.454	NaN	1	0	Median	348950000	174440000	174510000	0	0	0	135470000	82605000	52863000	0	0	0	213480000	91833000	121640000	4414	1862	4153	27108;27109	37060;37061	37060			2	
AQELGHSQSALASAQR	0	Unmodified	1652.823	0.82304527	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.29		5	1					4		2	2	3	3	22.091	18.039	2;3	4.2598E-16	15649	160511_QHF_FH_JSI10i_2	137.45	125.68			1.0305	1.0471	20.905	10	1	Median	1.2269	1.0389	6.8448	2	0	Median	0.95438	1.1376	20.379	2	0	Median	1.0385	1.0437	33.701	3	1	Median	0.87258	0.89438	13.457	3	0	Plateau	540810000	273150000	267660000	145100000	64568000	80531000	160350000	84571000	75779000	108300000	59373000	48930000	127050000	64636000	62419000	4415	2587	4154	27110;27111;27112;27113;27114;27115;27116;27117;27118;27119	37062;37063;37064;37065;37066;37067;37068;37069;37070;37071	37069			9	
AQELLLILDEYWQNHPELHDIPIYYASSLAK	1	Unmodified	3681.8719	0.87189953	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS		By matching		16	0									2	1		1		98.286	89.013	4	1.4772E-14	51110	160513_QHF_FH_JSI9Kac_6	96.068	85.907			0.87074	0.79938	42.979	2	0	Median	1.2561	1.0833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60363	0.58988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203120000	112960000	90163000	112330000	60759000	51569000	0	0	0	90793000	52200000	38594000	0	0	0	4416	5366	4155	27120;27121	37072	37072			1	
AQENSNSVK	1	Unmodified	975.46214	0.46213773	2695	Q15650	TRIP4	Activating signal cointegrator 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			2.5052	2.2645	2	0.0090738	1173	160511_QHF_FH_JSI10i_1	60.59	30.405			0.80898	0.88136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80898	0.88136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11443000	6144800	5298500	0	0	0	11443000	6144800	5298500	0	0	0	0	0	0	4417	2695	4156	27122	37073	37073			1	
AQENYEGSEEVSPPQTK	1	Unmodified	1891.8436	0.84356552	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	29.059	28.471	2;3	3.0719E-40	24971	160511_QHF_FH_JSI9i_1	158.81	142.56			1.1479	1.0419	29.736	5	2	Median	1.2805	1.0419	NaN	1	0	Median	0.75098	0.88286	NaN	1	0	Median	0.93122	0.87181	NaN	1	1	Median	1.4145	1.4769	27.586	2	1	Median	156020000	78740000	77284000	26805000	14361000	12444000	37824000	22697000	15127000	24558000	13707000	10851000	66836000	27975000	38861000	4418	3921	4157	27123;27124;27125;27126;27127;27128	37074;37075;37076;37077;37078;37079;37080;37081;37082	37082			9	
AQEPESGLSEETQVK	1	Unmodified	1630.7686	0.76860967	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.58	6				4	1				1	3	5	2	34.732	30.438	2	7.8524E-30	26557	160511_QHF_FH_JSI9i_1	196.57	176.81			0.86003	0.89997	18.225	11	4	Median	0.99406	0.81287	NaN	1	0	Median	0.75337	0.89056	4.984	3	2	Plateau	0.91926	0.89997	25.645	5	2	Median	0.89213	0.93586	10.615	2	0	Median	2927800000	1573500000	1354300000	446960000	244720000	202240000	1105200000	624780000	480430000	883370000	448920000	434450000	492250000	255040000	237210000	4419	2094	4158	27129;27130;27131;27132;27133;27134;27135;27136;27137;27138;27139	37083;37084;37085;37086;37087;37088;37089;37090;37091;37092;37093;37094;37095;37096;37097;37098;37099;37100;37101;37102;37103;37104;37105;37106	37104			23	
AQEPSAAIPK	1	Unmodified	1010.5397	0.53965977	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	23.771	22.901	2	0.00015996	19654	160511_QHF_FH_JSI9i_1	95.502	73.371			0.94497	0.87772	2.6116	2	2	Median	1.0837	0.89408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82397	0.86166	NaN	1	1	Median	396470000	232670000	163810000	157330000	78097000	79236000	0	0	0	0	0	0	239140000	154570000	84572000	4420	2676	4159	27140;27141	37107;37108	37108			2	
AQEQQQQMAELHSK	1	Unmodified	1654.7733	0.77331789	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.71	3	4					3			1	3	3	3	17.557	14.719	3	1.4337E-06	11774	160511_QHF_FH_JSI11i_2	106.52	98.348			0.88174	0.91898	14.522	10	2	Median	1.158	0.98945	NaN	1	0	Median	0.7084	0.82324	5.2642	3	0	Median	0.90442	0.90825	23.815	3	1	Median	0.92247	1.0109	4.8295	3	1	Plateau	588680000	285240000	303440000	85497000	39923000	45573000	162120000	80242000	81883000	154380000	72412000	81973000	186680000	92662000	94015000	4421	5213	4160	27142;27143;27144;27145;27146;27147;27148;27149;27150;27151	37109;37110;37111;37112;37113;37114;37115;37116;37117;37118;37119;37120;37121;37122;37123	37120			15	
AQEQQQQMAELHSK	1	Oxidation (M)	1670.7682	0.76823251	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	15.452	14.812	3	0.00023204	11818	160511_QHF_FH_JSI11i_2	68.168	62.086			2.0405	2.0901	55.8	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4187	1.4087	NaN	1	0	Median	2.9349	3.1012	NaN	1	1	Median	56443000	18240000	38203000	13235000	0	13235000	0	0	0	29985000	14827000	15158000	13223000	3412000	9810500	4422	5213	4160	27152;27153;27154	37124;37125;37126;37127	37126		2603	4	
AQESVGIYEVTHQFVK	1	Unmodified	1833.9261	0.92611336	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.5	5.16		4	1						1	2	2		2	70.538	68.426	3	1.4643E-07	59566	160511_QHF_FH_JSI12i_2	129.36	113.73			1.0002	1.1248	10.674	6	2	Median	1.4609	1.2357	12.562	2	0	Median	0.95207	1.1637	5.5367	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95325	1.0227	2.6914	2	0	Median	618850000	299720000	319130000	94125000	39108000	55017000	274100000	138810000	135290000	0	0	0	250630000	121810000	128820000	4423	5075	4161	27155;27156;27157;27158;27159;27160	37128;37129;37130;37131;37132;37133	37128			5	
AQETDSPLFLATR	0	Unmodified	1447.7307	0.73070802	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	60.656	59.702	2	0.00010633	54285	160511_QHF_FH_JSI12i_1	91.961	69.968			1.1933	1.0466	10.115	3	2	Median	1.317	1.1138	13.371	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97988	1.0466	NaN	1	0	Median	105190000	49630000	55556000	62050000	26636000	35414000	0	0	0	0	0	0	43136000	22995000	20141000	4424	4586	4162	27161;27162;27163	37134;37135;37136	37134			3	
AQETEAAPSQAPADEPEPESAAAQSQENQDTRPK	1	Unmodified	3577.6041	0.60407012	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	33.751	33.146	3;4	4.7338E-61	29613	160511_QHF_FH_JSI11i_1	173.33	171.7			0.98698	0.99609	7.2888	8	0	Median	1.1724	0.95697	2.3256	2	0	Median	0.8761	1.0682	5.5127	2	0	Median	1.0636	1.0409	5.9065	2	0	Median	0.89678	0.93906	8.0202	2	0	Median	1829100000	923130000	905940000	368520000	166470000	202060000	565150000	307030000	258120000	535420000	266240000	269170000	359980000	183390000	176590000	4425	5436	4163	27164;27165;27166;27167;27168;27169;27170;27171	37137;37138;37139;37140;37141;37142;37143;37144;37145;37146;37147;37148;37149;37150;37151;37152	37137			16	
AQETGHLVMDVR	0	Unmodified	1354.6663	0.66633362	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	2	2		30.661	29.927	2;3	1.3005E-10	26251	160511_QHF_FH_JSI10i_2	142.1	123.12			0.99019	0.95464	32.374	5	2	Median	0.99019	0.82481	NaN	1	0	Median	0.7309	0.88008	59.013	2	1	Median	1.0749	1.0535	13.941	2	1	Median	NaN	NaN	NaN	0	0	Median	265950000	132570000	133380000	26469000	15777000	10692000	38214000	19453000	18762000	201270000	97343000	103920000	0	0	0	4426	3799	4164	27172;27173;27174;27175;27176	37153;37154;37155;37156;37157;37158	37157			6	
AQEVAELK	1	Unmodified	886.476	0.47599688	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			17.311	16.637	2	0.0048454	14023	160511_QHF_FH_JSI10i_1	75.043	29.091			1.5251	1.5168	21.887	2	2	Median	2.1238	1.7707	NaN	1	1	Median	1.0952	1.2993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140590000	57265000	83328000	79329000	26639000	52691000	61263000	30626000	30637000	0	0	0	0	0	0	4427	3460	4165	27177;27178	37159;37160	37159			2	
AQEVEAELLESHQEETNQLLK	1	Unmodified	2437.1973	0.19726242	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.034	66.735	3	0.015877	57457	160511_QHF_FH_JSI12i_2	32.695	23.512			0.58996	0.64427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58996	0.64427	NaN	1	1	Median	18521000	12399000	6122000	0	0	0	0	0	0	0	0	0	18521000	12399000	6122000	4428	2414	4166	27179	37161	37161			1	
AQFAEATQR	0	Unmodified	1020.4989	0.49885759	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.615	13.647	2	0.0069532	10858	160511_QHF_FH_JSI9i_1	53.968	9.2757			17.051	13.489	NaN	1	0	Median	17.051	13.489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1026400000	56082000	970300000	1026400000	56082000	970300000	0	0	0	0	0	0	0	0	0	4429	615	4167	27180	37162	37162			1	
AQFAQPEILIGTIPGAGGTQR	0	Unmodified	2124.1328	0.13275209	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.52	2.67	8	8	8					1		6	5	7	7	88.602	87.707	2;3	3.744E-70	80376	160511_QHF_FH_JSI11i_1	287.78	264.66			1.1076	1.0751	10.133	24	4	Median	1.2526	1.0648	4.9205	5	1	Median	0.9088	1.0807	10.16	5	1	Median	1.0431	1.0632	11.942	7	0	Median	1.1007	1.0999	9.6834	7	2	Median	3689900000	1787400000	1902500000	712280000	316750000	395530000	821520000	449520000	372010000	1276800000	598940000	677850000	879300000	422230000	457070000	4430	1341	4168	27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205	37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174;37175;37176;37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205	37168			43	
AQFEDRN	0	Unmodified	878.38824	0.38824451	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	7.4246	7.1252	2	0.0083965	4973	160511_QHF_FH_JSI10i_1	84.244	24.603			1.0085	1.0358	8.1787	6	0	Plateau	1.2997	1.0965	NaN	1	0	Median	0.89876	1.0643	3.0215	2	0	Median	1.1818	1.1618	12.992	2	0	Median	0.93866	1.0065	NaN	1	0	Median	1240000000	578750000	661280000	53492000	23800000	29692000	387840000	199410000	188430000	392910000	176940000	215970000	405790000	178590000	227190000	4431	4576	4169	27206;27207;27208;27209;27210;27211	37206;37207;37208;37209	37209			4	
AQFEGIVTDLIR	0	Unmodified	1360.7351	0.73506511	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.39	4	6	2					1	4	3	4	5	5	88.616	85.62	2;3	1.4926E-31	78539	160511_QHF_FH_JSI11i_2	192.3	152.25			0.97355	0.99572	12.129	17	2	Median	1.186	0.95902	15.996	3	0	Plateau	0.77503	0.9356	9.713	4	0	Median	0.92467	1.0303	6.6972	5	0	Linear	0.97355	1.0156	13.1	5	2	Median	4196700000	2120800000	2075900000	177390000	80233000	97155000	487790000	269680000	218110000	2165800000	1060000000	1105800000	1365700000	710940000	654810000	4432	1480	4170	27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228	37210;37211;37212;37213;37214;37215;37216;37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227;37228;37229;37230;37231;37232;37233;37234;37235	37229			23	
AQFEGIVTDLIRR	0	Unmodified	1516.8362	0.83617614	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		80.378	79.476	2;3	3.0032E-06	65546	160511_QHF_FH_JSI9i_3	101.53	88.396			1.1234	1.0415	6.2674	6	1	Median	1.2588	1.0105	3.5331	3	0	Median	0.93567	1.1212	2.2888	2	1	Median	1.1265	1.0589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	839510000	380640000	458870000	342070000	153050000	189030000	401570000	182620000	218960000	95864000	44978000	50886000	0	0	0	4433	1480	4171	27229;27230;27231;27232;27233;27234	37236;37237;37238;37239;37240;37241;37242;37243;37244;37245	37241			9	
AQFFLGTTNK	1	Unmodified	1125.5819	0.58185894	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	4	1	2	49.086	48.221	2	4.7067E-06	40387	160511_QHF_FH_JSI10i_3	111.61	63.758			0.79514	0.90294	21.318	7	3	Median	0.79514	0.6981	NaN	1	1	Median	0.78929	0.89755	23.855	3	2	Median	0.99626	0.96227	NaN	1	0	Median	0.97595	1.0282	18.377	2	0	Median	674590000	388080000	286510000	99440000	57695000	41745000	230830000	149660000	81172000	28978000	12276000	16703000	315340000	168450000	146890000	4434	5049	4172	27235;27236;27237;27238;27239;27240;27241;27242	37246;37247;37248;37249;37250;37251;37252;37253	37249			7	
AQFFLHLSPSHYALLQYHYGTLSLLK	1	Unmodified	3046.6069	0.60689848	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	5	3	5	1	88.576	80.254	3;4;5	2.4572E-273	45905	160513_QHF_FH_JSI10Kac_6	340.57	331.23			1.1248	0.97785	44.4	14	1	Median	1.1239	0.95618	25.284	5	1	Median	0.72003	0.84324	7.606	3	0	Median	1.2342	1.1595	64.965	5	0	Median	1.34	1.4062	NaN	1	0	Median	14297000000	6995100000	7301500000	5179200000	2352500000	2826800000	5194000000	3134700000	2059300000	2932900000	1093100000	1839800000	990460000	414770000	575680000	4435	3562	4173	27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256	37254;37255;37256;37257;37258;37259;37260;37261;37262;37263;37264;37265;37266;37267;37268;37269;37270;37271;37272;37273;37274	37270			21	
AQFFVEDASTASALK	1	Unmodified	1583.7831	0.78313752	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	66.38	65.562	2	4.9853E-10	58215	160511_QHF_FH_JSI9i_1	150.69	127.37			0.52946	0.49486	14.215	2	1	Median	0.53924	0.44753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51986	0.54718	NaN	1	1	Median	227760000	157140000	70624000	88017000	60705000	27313000	0	0	0	0	0	0	139740000	96432000	43311000	4436	5257	4174	27257;27258	37275;37276;37277	37276			3	
AQFLQNLLLPQAK	1	Unmodified	1482.8558	0.85584895	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	89.895	89.218	2;3	3.6872E-22	77512	160511_QHF_FH_JSI12i_3	175.73	160.59			0.99985	0.93592	10.463	4	0	Median	1.1503	0.9835	NaN	1	0	Median	0.75903	0.89064	NaN	1	0	Median	0.938	0.88289	NaN	1	0	Median	1.0658	1.1044	NaN	1	0	Median	78547000	39705000	38842000	7878100	3863400	4014700	11803000	6539200	5264000	19540000	11867000	7672800	39326000	17436000	21890000	4437	629	4175	27259;27260;27261;27262;27263	37278;37279;37280;37281	37281			3	
AQFLVEK	1	Unmodified	833.4647	0.46470391	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.66	4	4	5				2	3		4	4	5	5	35.012	31.54	2	0.004105	26750	160511_QHF_FH_JSI12i_2	100.19	45.663			0.92882	1.0042	20.056	17	1	Median	1.2553	1.033	25.861	4	0	Median	0.85094	1.0134	15.335	4	0	Median	0.89715	0.90689	14.671	5	0	Median	1.1134	1.2153	22.054	4	1	Median	7298900000	3638400000	3660500000	1396200000	684140000	712050000	1989400000	1030300000	959060000	2323900000	1145400000	1178500000	1589400000	778550000	810870000	4438	4296	4176	27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274;27275;27276;27277;27278;27279;27280;27281	37282;37283;37284;37285;37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305;37306;37307;37308;37309;37310	37287			29	
AQFLVEKAK	2	Acetyl (K)	1074.6073	0.6073454	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		55.154	44.248	2	0.00014246	25644	160513_QHF_FH_JSI11Kac_4	113.62	69.814			0.36614	0.36337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36614	0.36337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30180000	21239000	8941400	0	0	0	0	0	0	30180000	21239000	8941400	0	0	0	4439	4296	4177	27282	37311	37311	3113		1	
AQFVTCGQDK	1	Unmodified	1152.5234	0.52335778	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.047	17.577	2	0.00017002	15133	160511_QHF_FH_JSI12i_1	94.692	73.79			1.7738	1.8311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7738	1.8311	NaN	1	1	Median	73828000	29452000	44376000	0	0	0	0	0	0	0	0	0	73828000	29452000	44376000	4440	737	4178	27283	37312	37312			1	
AQGAGVTLPPTPSGSR	0	Unmodified	1494.7791	0.77905519	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	40.321	39.409	2	0.00065496	34756	160511_QHF_FH_JSI9i_1	66.498	51.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4441	3111	4179	27284;27285	37313;37314	37314			2	
AQGAIAMASIAK	1	Unmodified	1130.6118	0.61177885	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.81		3	4				1			2	2	3	1	45.064	42.973	2	2.6747E-07	36557	160511_QHF_FH_JSI12i_3	129.89	115.22			0.88249	0.8737	17.613	8	0	Median	1.089	0.92019	6.1789	2	0	Median	0.78436	0.92912	9.8501	2	0	Median	0.71332	0.69359	11.113	3	0	Median	1.125	1.1302	NaN	1	0	Median	454420000	222320000	232100000	79751000	29414000	50336000	94794000	57133000	37661000	173370000	86512000	86854000	106510000	49263000	57246000	4442	2997	4180	27286;27287;27288;27289;27290;27291;27292;27293	37315;37316;37317;37318;37319;37320;37321;37322;37323;37324;37325;37326	37325			12	
AQGAVTGKPR	1	Acetyl (K)	1025.5618	0.56179219	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.7					1	3	3				3	2	2	17.912	10.176	2	9.2412E-09	7439	160513_QHF_FH_JSI12Kac_3	144.77	81.205			0.88983	0.97551	4.8034	7	0	Median	NaN	NaN	NaN	0	0	Median	0.85496	1.034	4.3248	3	0	Plateau	0.96661	0.95171	0.12355	2	0	Median	0.89743	0.97555	7.0704	2	0	Median	106030000	55840000	50195000	0	0	0	34070000	18770000	15299000	31541000	16687000	14855000	40424000	20383000	20041000	4443	1150	4181	27294;27295;27296;27297;27298;27299;27300	37327;37328;37329;37330;37331;37332;37333;37334;37335	37333	1008		9	
AQGEPVAGHESPK	1	Unmodified	1305.6313	0.63132832	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.48	5.34	8	8					5			4	5	7	5	8.9796	7.0235	2;3	9.054E-06	5892	160511_QHF_FH_JSI12i_1	115.68	97.414			0.83908	0.89565	14.604	20	2	Median	1.2608	1.0858	12.936	4	0	Median	0.79088	0.94695	9.1708	5	1	Median	0.95753	0.95533	16.264	6	1	Median	0.78249	0.86768	12.079	5	0	Median	3516000000	1897100000	1618900000	584810000	288250000	296560000	1018600000	576190000	442390000	1135700000	597880000	537790000	776900000	434770000	342130000	4444	636	4182	27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312;27313;27314;27315;27316;27317;27318;27319;27320;27321	37336;37337;37338;37339;37340;37341;37342;37343;37344;37345;37346;37347;37348;37349;37350;37351;37352;37353;37354;37355;37356;37357;37358;37359;37360;37361;37362;37363;37364;37365;37366;37367;37368	37344			33	
AQGGQTQSPTK	1	Unmodified	1101.5415	0.54145068	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	2	1	4.7851	4.4551	2	1.5368E-13	2378	160511_QHF_FH_JSI11i_1	133.81	62.889			1.0641	1.0548	6.045	4	1	Median	1.3239	1.0844	NaN	1	0	Median	0.80674	0.95656	NaN	1	0	Median	1.0505	1.026	NaN	1	1	Median	1.0778	1.0883	NaN	1	0	Median	548430000	272140000	276290000	161960000	75504000	86460000	133280000	74686000	58591000	122850000	60456000	62393000	130340000	61495000	68842000	4445	1491	4183	27322;27323;27324;27325;27326;27327	37369;37370;37371;37372;37373;37374;37375	37370			7	
AQGGTVLPTEPQSEEQLSK	1	Unmodified	1997.9906	0.99056411	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.295	46.797	2	5.4952E-18	42517	160511_QHF_FH_JSI12i_1	161.76	131.95			1.059	1.2213	12.326	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9026	1.0402	NaN	1	0	Median	1.059	0.99868	NaN	1	0	Median	1.2041	1.2581	NaN	1	0	Median	88480000	46199000	42281000	0	0	0	29376000	18708000	10668000	23576000	11624000	11952000	35528000	15867000	19661000	4446	2574	4184	27328;27329;27330	37376;37377;37378;37379;37380	37379			5	
AQGIAPEDK	1	Unmodified	927.46616	0.46616048	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	11.1	10.666	2	0.00014996	8125	160511_QHF_FH_JSI9i_1	89.355	41.506			1.0703	0.93117	22.708	3	0	Plateau	0.93795	0.77094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1519	1.1247	NaN	1	0	Median	0.71561	0.74843	NaN	1	0	Median	401870000	201180000	200690000	139300000	66147000	73157000	0	0	0	142030000	74871000	67156000	120540000	60160000	60380000	4447	2276	4185	27331;27332;27333;27334	37381;37382;37383;37384;37385	37384			4	
AQGISANK	1	Unmodified	787.41882	0.41881635	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	6.274	5.9291	2	0.0016363	3940	160511_QHF_FH_JSI12i_1	86.833	51.477			0.96803	1.0329	9.2456	5	0	Median	1.1502	0.9552	NaN	1	0	Median	0.93811	1.1298	8.7903	2	0	Median	0.99431	0.96592	NaN	1	0	Median	0.96455	1.0329	NaN	1	0	Median	1361100000	716850000	644230000	326410000	160110000	166290000	370570000	200850000	169720000	292400000	140360000	152040000	371700000	215530000	156170000	4448	3503	4186	27335;27336;27337;27338;27339	37386;37387;37388;37389;37390;37391	37387			6	
AQGNVYHLK	1	Unmodified	1028.5403	0.54032847	1973	P61968	LMO4	LIM domain transcription factor LMO4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	12.755	12.837	2	0.0058057	10326	160511_QHF_FH_JSI11i_3	56.547	24.192			0.71065	0.71959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71065	0.71959	NaN	1	1	Median	34983000	19562000	15421000	0	0	0	0	0	0	0	0	0	34983000	19562000	15421000	4449	1973	4187	27340;27341	37392;37393	37392			2	
AQGPAASAEEPK	1	Unmodified	1154.5568	0.5567664	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.94	10.507	2	4.425E-05	8330	160511_QHF_FH_JSI10i_1	87.184	66.664			0.8543	0.90828	9.228	3	0	Plateau	1.334	1.0771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0235	1.001	NaN	1	0	Median	0.8543	0.89668	NaN	1	0	Median	169190000	76213000	92981000	49701000	23647000	26053000	0	0	0	56863000	20913000	35950000	62631000	31653000	30978000	4450	2101	4188	27342;27343;27344;27345	37394;37395;37396;37397	37397			4	
AQGPAASAEEPKPVEAPAANSDQTVTVK	2	Unmodified	2762.3723	0.37226668	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.64	8	1	1							2	3	3	2	42.18	41.566	3;4	8.9135E-70	37447	160511_QHF_FH_JSI11i_1	215.98	209.19			0.94638	0.98729	9.6963	10	0	Median	1.1397	0.92275	6.9593	2	0	Median	0.86936	1.0135	14.343	3	0	Median	1.0301	1.0136	12.231	3	0	Plateau	0.92545	0.98398	3.0763	2	0	Median	8573400000	4010900000	4562500000	1705900000	797120000	908740000	2361400000	1207500000	1153900000	2395400000	989480000	1405900000	2110800000	1016900000	1093900000	4451	2101	4189	27346;27347;27348;27349;27350;27351;27352;27353;27354;27355	37398;37399;37400;37401;37402;37403;37404;37405;37406;37407;37408;37409;37410;37411;37412;37413;37414;37415;37416;37417;37418;37419;37420	37401			23	
AQGPAASAEEPKPVEAPAANSDQTVTVKE	2	Unmodified	2891.4149	0.41485977	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.825	15	3	5							6	6	6	5	43.812	43.06	2;3;4	4.5108E-98	39366	160511_QHF_FH_JSI12i_1	248.4	237.2			1.0527	1.052	26.107	21	7	Median	1.25	1.052	17.105	5	1	Median	0.90556	1.0702	28.218	6	2	Median	0.93401	0.90801	32.303	6	2	Median	1.3071	1.3305	21.751	4	2	Median	28562000000	13378000000	15183000000	6017200000	2592000000	3425200000	7459400000	3692600000	3766800000	6585700000	3188700000	3396900000	8499400000	3905000000	4594400000	4452	2101	4190	27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378	37421;37422;37423;37424;37425;37426;37427;37428;37429;37430;37431;37432;37433;37434;37435;37436;37437;37438;37439;37440;37441;37442;37443;37444;37445;37446;37447;37448;37449;37450;37451;37452;37453;37454;37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467	37439			47	
AQGPDGGLTASTYSYLGGFDSSSNVLAGQLR	0	Unmodified	3088.4738	0.47377163	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	100.17	100.05	3	4.4122E-28	90704	160511_QHF_FH_JSI12i_1	125.06	120.7			0.88397	0.93127	21.136	3	0	Plateau	1.6536	1.4103	NaN	1	0	Median	1.0841	1.2285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88397	0.93127	NaN	1	0	Median	110440000	55603000	54834000	28146000	10848000	17298000	31926000	16453000	15472000	0	0	0	50365000	28302000	22063000	4453	3167	4191	27379;27380;27381	37468;37469;37470;37471;37472;37473;37474	37469			7	
AQGPLAMLQHFDTIYSILHHFR	0	Oxidation (M)	2610.3165	0.31654689	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	1	3	2	91.394	82.629	4;5	5.8797E-60	47757	160513_QHF_FH_JSI10Kac_6	192.94	172.12			1.0682	1.0607	26.055	8	0	Median	1.0682	0.89628	3.851	2	0	Median	0.92324	1.0979	NaN	1	0	Median	1.6411	1.5829	4.2231	3	0	Median	0.90992	0.97388	7.2089	2	0	Median	1560800000	671880000	888870000	354300000	137180000	217120000	406100000	205600000	200500000	609750000	218380000	391360000	190610000	110720000	79892000	4454	2605	4192	27382;27383;27384;27385;27386;27387;27388;27389	37475;37476;37477;37478;37479	37479		2047	5	
AQGPLAMLQHFDTIYSILHHFR	0	Unmodified	2594.3216	0.32163227	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	4	2	3	2	95.895	87.277	3;4;5	2.6585E-126	51365	160513_QHF_FH_JSI10Kac_6	256.11	239.81			1.0555	1.0069	21.612	11	3	Median	1.1116	0.94936	18.416	4	2	Median	0.82133	0.966	7.388	2	1	Median	1.5344	1.4568	21.752	3	0	Median	1.0297	1.0802	2.278	2	0	Median	10401000000	5283600000	5117700000	2029700000	968220000	1061400000	5530600000	3158500000	2372100000	1511600000	525860000	985740000	1329500000	631050000	698440000	4455	2605	4192	27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400	37480;37481;37482;37483;37484;37485;37486;37487;37488;37489;37490;37491;37492;37493	37491			14	
AQGPQQQPGSEGPSYAK	1	Unmodified	1728.8067	0.80672651	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	3.6	9					1				2	2	3	3	19.17	17.887	2;3	5.1476E-11	15194	160511_QHF_FH_JSI12i_1	108.72	86.689			0.93691	0.91762	41.93	9	2	Median	0.99458	0.80793	21.627	2	0	Median	0.83568	0.99577	16.431	2	0	Median	1.0786	1.0416	64.686	3	1	Median	0.84365	0.85817	5.3952	2	1	Median	1019900000	531660000	488250000	234300000	105830000	128470000	261520000	153150000	108370000	272830000	126300000	146540000	251260000	146380000	104880000	4456	2825	4193	27401;27402;27403;27404;27405;27406;27407;27408;27409;27410	37494;37495;37496;37497;37498;37499;37500;37501;37502;37503;37504;37505;37506;37507;37508;37509	37500			16	
AQGWAPLK	1	Unmodified	869.47594	0.4759373	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.106	33.769	2	0.013098	28609	160511_QHF_FH_JSI12i_2	52.636	34.87			1.1459	1.2303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1459	1.2303	NaN	1	0	Median	25922000	12858000	13064000	0	0	0	0	0	0	0	0	0	25922000	12858000	13064000	4457	4320	4194	27411	37510	37510			1	
AQGWAPLKPLPPSAK	2	Unmodified	1559.8824	0.88239805	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	3	1	1	52.095	51.105	3	0.00081983	41941	160511_QHF_FH_JSI9i_3	68.919	29.002			0.99363	0.90101	11.307	5	5	Plateau	1.4112	1.161	NaN	1	1	Median	0.96445	1.1048	6.1979	2	2	Median	1.0241	0.95478	NaN	1	1	Median	0.88096	0.90101	NaN	1	1	Median	725350000	371440000	353910000	136820000	56679000	80141000	230440000	127520000	102920000	158920000	81545000	77380000	199170000	105690000	93474000	4458	4320	4195	27412;27413;27414;27415;27416;27417;27418;27419	37511;37512;37513;37514;37515;37516;37517;37518;37519	37516			9	
AQHEDQVEQYK	1	Unmodified	1373.6212	0.62115757	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.32	4.29	9	8	2				3			6	5	6	5	11.411	9.8812	2;3	5.0289E-30	8001	160511_QHF_FH_JSI10i_2	194.17	174.18			0.97163	1.0559	23.705	22	4	Median	1.3365	1.1111	37.071	6	2	Median	0.90813	1.102	19.135	5	1	Median	0.98897	0.99537	16.2	6	1	Median	0.95415	1.0489	6.937	5	0	Median	3790300000	1810300000	1980000000	630900000	269610000	361290000	943020000	516530000	426490000	1324900000	564150000	760750000	891520000	460020000	431500000	4459	791	4196	27420;27421;27422;27423;27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441	37520;37521;37522;37523;37524;37525;37526;37527;37528;37529;37530;37531;37532;37533;37534;37535;37536;37537;37538;37539;37540;37541;37542;37543;37544;37545;37546;37547;37548;37549;37550;37551;37552;37553;37554;37555	37555			36	
AQHEDQVEQYKK	2	Unmodified	1501.7161	0.71612058	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.39	0.487		11	7							3	4	6	5	8.9431	8.6564	2;3;4	9.422E-42	6120	160511_QHF_FH_JSI11i_3	227.53	215.94			0.91273	0.86421	25.95	18	0	Median	1.3254	1.1224	6.8552	3	0	Median	0.6507	0.79152	8.1719	4	0	Median	0.87546	0.8794	4.4978	6	0	Linear	1.0623	1.0829	33.005	5	0	Median	8552600000	4473100000	4079500000	651370000	272160000	379210000	782940000	432280000	350650000	3236600000	1615400000	1621200000	3881700000	2153200000	1728500000	4460	791	4197	27442;27443;27444;27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457;27458;27459	37556;37557;37558;37559;37560;37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572;37573;37574;37575;37576;37577;37578;37579;37580;37581	37560			26	
AQHEDQVEQYKK	2	Acetyl (K)	1543.7267	0.72668527	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	25.631	17.912	2	0.0049509	11075	160513_QHF_FH_JSI12Kac_4	72.006	53.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1046600	1046600	0	0	0	0	0	0	0	0	0	0	1046600	1046600	0	4461	791	4197	27460	37582	37582	412		1	
AQHLADILSSK	1	Unmodified	1181.6404	0.64043645	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	40.303	39.53	2;3	5.7249E-07	34475	160511_QHF_FH_JSI11i_3	113.63	101.4			1.0524	1.0761	27.758	9	1	Median	1.206	0.98665	26.004	2	0	Median	0.83068	0.91952	6.2549	3	1	Plateau	1.8823	1.7697	4.6534	2	0	Median	1.0663	1.0885	1.6235	2	0	Median	1071100000	532640000	538480000	85921000	36660000	49261000	297870000	137540000	160320000	227410000	96840000	130570000	459920000	261590000	198320000	4462	5301	4198	27461;27462;27463;27464;27465;27466;27467;27468;27469	37583;37584;37585;37586;37587;37588;37589;37590;37591;37592;37593;37594;37595;37596	37583			14	
AQHPDYSFGELSR	0	Unmodified	1505.6899	0.68990583	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.253	40.057	3	0.0020432	34070	160511_QHF_FH_JSI12i_3	58.079	47.42			0.98925	1.0465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98925	1.0465	NaN	1	1	Median	47185000	21793000	25392000	0	0	0	0	0	0	0	0	0	47185000	21793000	25392000	4463	3318	4199	27470	37597	37597			1	
AQHPNIVTVR	0	Unmodified	1133.6305	0.63054046	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			19.117	17.964	2;3	0.002624	14401	160511_QHF_FH_JSI9i_3	46.844	39.277			0.8723	1.059	20.173	3	0	Median	1.5035	1.2133	NaN	1	0	Median	0.7889	0.92948	18.449	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195770000	92506000	103270000	85044000	32148000	52896000	110730000	60358000	50370000	0	0	0	0	0	0	4464	1187	4200	27471;27472;27473	37598;37599;37600	37600			2	
AQHQLGEFK	1	Unmodified	1056.5352	0.53524309	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	15.141	14.852	2;3	9.0679E-07	12415	160511_QHF_FH_JSI9i_2	135.83	109.23			1.1036	1.0615	25.931	8	2	Median	1.9536	1.7115	0.70436	2	1	Median	0.81516	0.98496	NaN	1	1	Median	1.1431	1.0783	13.776	3	0	Plateau	1.0832	1.1	7.2611	2	0	Median	1698100000	717770000	980350000	135740000	42777000	92966000	55769000	32612000	23157000	613810000	279710000	334100000	892800000	362670000	530130000	4465	3503	4201	27474;27475;27476;27477;27478;27479;27480;27481	37601;37602;37603;37604;37605;37606;37607;37608;37609;37610;37611;37612;37613	37605			13	
AQHQQALSSLELLNVLFR	0	Unmodified	2066.1273	0.12727278	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			2						2	2	2			97.668	93.919	3	5.3001E-12	47947	160513_QHF_FH_JSI9Kac_6	126.84	101.52			1.0278	1.016	4.9077	4	1	Median	1.1955	0.98218	2.296	2	0	Median	0.9086	1.0585	3.3062	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	537310000	298230000	239080000	222820000	99679000	123140000	314490000	198550000	115940000	0	0	0	0	0	0	4466	4361	4202	27482;27483;27484;27485	37614;37615;37616	37615			3	
AQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFR	0	Unmodified	3616.8063	0.80627958	4508	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			90.314	89.232	4	0.0047236	74491	160511_QHF_FH_JSI10i_3	27.112	25.408			0.93828	1.0797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93828	1.0797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28496000	14735000	13762000	0	0	0	28496000	14735000	13762000	0	0	0	0	0	0	4467	4508	4203	27486	37617	37617			1	
AQIAGYLYGVSPPDNPQVK	1	Unmodified	2016.0316	0.031641064	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	71.639	71.013	2;3	1.5127E-15	64560	160511_QHF_FH_JSI11i_1	165.64	143.41			1.1168	1.0093	9.3434	2	1	Median	1.124	0.94477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1097	1.0782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97356000	54955000	42402000	64122000	33687000	30436000	0	0	0	17821000	5855400	11966000	15413000	15413000	0	4468	3101	4204	27487;27488;27489	37618;37619;37620;37621	37618			4	
AQIDNLTR	0	Unmodified	929.49304	0.49304393	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.67	6.13	1						2					2	1	20.914	20.423	2	0.020243	17832	160511_QHF_FH_JSI12i_1	56.547	2.3419			1.0286	1.0422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0286	1.0422	NaN	1	1	Median	131870000	61635000	70233000	0	0	0	0	0	0	0	0	0	131870000	61635000	70233000	4469	1085	4205	27490;27491;27492	37622;37623;37624	37622			3	
AQIDSNIAHTVGLWSYATEK	1	Unmodified	2203.0909	0.090946857	1626	P48553	TRAPPC10	Trafficking protein particle complex subunit 10	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.813	80.813	3	0.00033656	72203	160511_QHF_FH_JSI11i_3	55.02	46.197			0.21284	0.19926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21284	0.19926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43388000	35030000	8357800	0	0	0	0	0	0	43388000	35030000	8357800	0	0	0	4470	1626	4206	27493	37625	37625			1	
AQIEDTLRR	0	Unmodified	1100.5938	0.5938206	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.57		5	1					2		2	2	2	2	22.607	19.79	2;3	3.2267E-05	17196	160511_QHF_FH_JSI10i_2	101.65	45.97			0.86109	0.92936	12.301	8	0	Median	1.2082	1.0308	1.7121	2	0	Median	0.75417	0.92936	0.09307	2	0	Median	0.88837	0.88499	4.7505	2	0	Median	0.76751	0.80982	20.649	2	0	Median	470240000	227600000	242630000	160590000	67412000	93178000	192670000	98630000	94045000	72900000	40457000	32444000	44071000	21106000	22965000	4471	4014	4207	27494;27495;27496;27497;27498;27499;27500;27501	37626;37627;37628;37629;37630;37631	37630			5	
AQIFANTVDNAR	0	Unmodified	1318.663	0.6629628	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.88	5	9	6			2	3	4	1	7	7	9	7	41.465	37.642	2;3	2.6363E-93	31405	160511_QHF_FH_JSI10i_3	301.79	261.75			1.022	0.99758	14.996	30	6	Median	1.076	0.88751	20.519	7	2	Median	0.87116	1.0427	12.125	7	1	Median	1.0291	1.0048	10.992	9	2	Median	0.90411	0.97829	14.93	7	1	Median	34095000000	17246000000	16849000000	6539300000	3025600000	3513700000	7085100000	4213100000	2872000000	13359000000	6523700000	6835200000	7111700000	3483600000	3628100000	4472	842	4208	27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531	37632;37633;37634;37635;37636;37637;37638;37639;37640;37641;37642;37643;37644;37645;37646;37647;37648;37649;37650;37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662;37663;37664;37665;37666;37667;37668;37669;37670	37641			39	
AQIGTVLPSLIDR	0	Unmodified	1381.7929	0.79291434	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		81.007	79.677	2	3.7676E-12	71390	160511_QHF_FH_JSI11i_3	116.55	101.4			0.99409	0.97605	8.7102	2	0	Median	1.2509	1.0381	NaN	1	0	Median	0.79002	0.91775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49934000	27266000	22669000	17196000	9266800	7929100	32738000	17999000	14740000	0	0	0	0	0	0	4473	3266	4209	27532;27533;27534	37671;37672;37673;37674;37675	37671			5	
AQIHALEGGEVK	1	Unmodified	1250.6619	0.66190017	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		3	3									3	3	24.054	23.723	2;3	2.3855E-07	19798	160511_QHF_FH_JSI11i_2	151.15	126.22			1.3063	1.2936	25.756	6	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99525	1.0139	19.784	3	1	Median	1.3232	1.3052	15.1	3	1	Plateau	387370000	183930000	203430000	0	0	0	0	0	0	238240000	117790000	120440000	149130000	66143000	82987000	4474	1148	4210	27535;27536;27537;27538;27539;27540	37676;37677;37678;37679;37680	37677			5	
AQIHDLVLVGGSTR	0	Unmodified	1464.8049	0.80487601	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.49	6.42	1	9	13				1	11	8	11	13	9	10	54.411	49.146	2;3	1.3511E-55	25985	160513_QHF_FH_JSI9Kac_6	209.64	164.5			1.0585	1.0613	58.914	42	10	Median	1.2746	1.0749	15.281	11	1	Median	0.84288	0.97827	13.155	12	6	Median	1.1746	1.1256	99.062	9	1	Median	1.0689	1.107	79.978	10	2	Median	50071000000	27980000000	22091000000	5056900000	2162600000	2894300000	13723000000	7450200000	6272500000	14866000000	8653400000	6212300000	16426000000	9713900000	6712100000	4475	954	4211	27541;27542;27543;27544;27545;27546;27547;27548;27549;27550;27551;27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569;27570;27571;27572;27573;27574;27575;27576;27577;27578;27579;27580;27581;27582;27583	37681;37682;37683;37684;37685;37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755;37756;37757;37758;37759	37742			78	
AQIHDLVLVGGSTRIPK	1	Unmodified	1803.0367	0.036666863	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS			6.25	5.63			3						1	1	3			61.394	56.496	3;4	1.0496E-05	47609	160511_QHF_FH_JSI10i_3	92.575	81.296			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21554000	21554000	0	0	0	0	21554000	21554000	0	0	0	0	0	0	0	4476	954	4212	27584;27585;27586;27587	37760;37761;37762;37763	37760			4	
AQIHEQNPSVEVVYYNK	1	Unmodified	2016.9905	0.99050453	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	45.389	44.415	3	3.0155E-06	39010	160511_QHF_FH_JSI10i_2	103.5	86.816			1.0256	1.0161	15.443	5	4	Median	1.1167	0.97327	NaN	1	1	Median	0.81651	0.98081	16.201	2	2	Median	1.0256	1.0161	NaN	1	0	Median	1.173	1.322	NaN	1	1	Median	326280000	161910000	164370000	56962000	24978000	31984000	95653000	49162000	46491000	87562000	47347000	40215000	86102000	40421000	45681000	4477	4503	4213	27588;27589;27590;27591;27592	37764;37765;37766;37767;37768;37769	37768			6	
AQIHQFREDSLDSVLFLK	1	Unmodified	2145.1219	0.12185306	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		81.748	81.106	4	1.853E-07	71338	160511_QHF_FH_JSI11i_3	115.31	105.39			1.3412	1.211	28.304	2	1	Median	1.7301	1.4793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0396	0.99136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72408000	36496000	35912000	7511600	2851500	4660100	0	0	0	64897000	33645000	31252000	0	0	0	4478	2457	4214	27593;27594	37770;37771;37772	37771			3	
AQILAGGR	0	Unmodified	784.45554	0.45553621	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	15.147	14.713	2	0.0078799	11674	160511_QHF_FH_JSI10i_3	58.167	19.146			1.1053	1.2042	9.7383	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1261	1.29	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.1241	NaN	1	0	Median	160970000	69358000	91608000	0	0	0	46987000	23546000	23441000	0	0	0	113980000	45812000	68167000	4479	4122	4215	27595;27596	37773;37774	37773			2	
AQILGGANTPYEK	1	Unmodified	1360.6987	0.69867961	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	2	4	42.423	39.119	2	9.1873E-06	34761	160511_QHF_FH_JSI9i_1	132.32	79.841			0.8979	0.95215	38.188	8	3	Median	1.7359	1.4975	42.193	2	1	Median	0.74424	0.9228	NaN	1	0	Median	1.0191	1.009	3.7713	2	0	Median	0.58789	0.64426	21.164	3	2	Median	696280000	368770000	327510000	137010000	47800000	89215000	29586000	16262000	13323000	261420000	138540000	122880000	268260000	166160000	102100000	4480	4896	4216	27597;27598;27599;27600;27601;27602;27603;27604;27605;27606	37775;37776;37777;37778;37779;37780;37781;37782;37783;37784;37785;37786	37782			10	
AQILGGANTPYEKGVFK	2	Acetyl (K)	1833.9625	0.96249887	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.148	66.512	2	0.0020086	35399	160513_QHF_FH_JSI11Kac_5	111.79	70.253			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1205500	1205500	0	0	0	0	0	0	0	1205500	1205500	0	0	0	0	4481	4896	4217	27607	37787	37787	3258		1	
AQILPIR	0	Acetyl (Protein N-term)	851.52289	0.52288749	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.69	5	2		1		1	2			2	3	3	3	74.066	70.651	1;2	0.0014763	65215	160511_QHF_FH_JSI11i_1	102.98	59.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4482	2155	4218	27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618	37788;37789;37790;37791;37792;37793;37794;37795;37796;37797;37798;37799;37800;37801;37802	37789			15	
AQIMGFMPVTYK	1	Unmodified	1384.6883	0.68831462	5587	Q9Y3D5	MRPS18C	28S ribosomal protein S18c, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	79.11	77.909	2	6.2035E-05	68433	160511_QHF_FH_JSI11i_2	86.344	76.563			2.161	2.3214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.161	2.3214	NaN	1	1	Median	40189000	12668000	27521000	0	0	0	0	0	0	0	0	0	40189000	12668000	27521000	4483	5587	4219	27619;27620	37803;37804	37804			2	
AQIMNVSWSADHR	0	Unmodified	1513.7096	0.70959542	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		46.851	45.792	2;3	1.756E-05	38346	160511_QHF_FH_JSI10i_3	101.32	98.124			0.78758	0.94891	2.1406	3	0	Plateau	1.2191	0.9904	NaN	1	0	Median	0.78046	0.94891	NaN	1	0	Median	1.0542	0.97048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220220000	110460000	109760000	65654000	30815000	34839000	82566000	41097000	41469000	72003000	38549000	33455000	0	0	0	4484	991	4220	27621;27622;27623;27624	37805;37806;37807;37808	37806			4	
AQIQAVIDANIFPVLIEILQK	1	Unmodified	2335.3515	0.35151864	439;254	O15131;O60684	KPNA5;KPNA6	Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	0		By MS/MS			16	0									1		1			101.92	96.203	3	0.00034386	56849	160513_QHF_FH_JSI10Kac_6	86.625	79.003			1.1061	1.2766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1061	1.2766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53366000	20159000	33207000	0	0	0	53366000	20159000	33207000	0	0	0	0	0	0	4485	254;439	4221	27625	37809	37809			1	
AQIQQFHSQIAAQTSASVLAEELHK	1	Unmodified	2734.4038	0.40384158	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							5	2	1	1	72.454	71.476	3;4	6.8904E-35	63542	160511_QHF_FH_JSI11i_3	175.42	168.46			0.95813	0.83116	11.781	7	2	Median	1.2045	1.027	13.311	3	1	Plateau	0.67967	0.7961	5.457	2	0	Median	0.87562	0.82782	NaN	1	0	Median	0.95813	0.9627	NaN	1	1	Median	767550000	387620000	379930000	211420000	102570000	108850000	204660000	123120000	81536000	264470000	125430000	139040000	87001000	36499000	50502000	4486	3328	4222	27626;27627;27628;27629;27630;27631;27632;27633;27634	37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820;37821	37811			12	
AQITQKIGVHAFQQR	1	Acetyl (K)	1765.9588	0.95875089	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		62.632	53.607	3	0.00033061	29118	160513_QHF_FH_JSI11Kac_6	122.33	96.609			1.1282	1.211	196.36	2	2	Median	NaN	NaN	NaN	0	0	Median	4.076	4.8546	NaN	1	1	Median	0.3123	0.30209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16749000	8487000	8262200	0	0	0	8206500	699740	7506800	8542700	7787300	755400	0	0	0	4487	828	4223	27635;27636	37822;37823	37822	482		2	
AQIWDTAGQER	0	Unmodified	1273.6051	0.60511357	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							2	3	2	3	36.16	35.428	2	3.3157E-23	30076	160511_QHF_FH_JSI12i_2	175.73	146.58			1.4375	1.5066	20.786	8	2	Median	1.4967	1.2785	NaN	1	0	Median	1.2514	1.5334	10.205	2	0	Median	1.4373	1.4219	15.889	2	0	Median	1.1775	1.3407	30.559	3	2	Plateau	2811600000	1156100000	1655500000	255340000	100430000	154910000	1014400000	453300000	561130000	1150000000	436530000	713480000	391830000	165810000	226020000	4488	2009;2722	4224	27637;27638;27639;27640;27641;27642;27643;27644;27645;27646	37824;37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835;37836;37837;37838	37826			15	
AQKEAAGFLDR	1	Acetyl (K)	1246.6306	0.63060004	4781	Q9H8E8	CSRP2BP	Cysteine-rich protein 2-binding protein	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13.8	0.433						1	3				1	1	2	51.657	41.455	2	6.5542E-07	23560	160513_QHF_FH_JSI12Kac_4	110.39	55.979			0.73313	0.75863	25.582	4	0	Median	NaN	NaN	NaN	0	0	Median	0.91381	1.0657	NaN	1	0	Median	0.73405	0.73063	NaN	1	0	Median	0.61541	0.67175	22.518	2	0	Median	32416000	18150000	14266000	0	0	0	11114000	5846600	5267300	3395100	1725500	1669600	17907000	10577000	7329600	4489	4781	4225	27647;27648;27649;27650	37839;37840;37841;37842	37842	3230		4	
AQLAAITLIIGTFER	0	Unmodified	1615.9297	0.92974218	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	3	2	98.372	90.887	2;3	5.4541E-75	48599	160513_QHF_FH_JSI12Kac_6	229.75	166.34			1.132	0.97769	17.395	9	1	Median	1.1445	0.9734	0.62174	2	0	Median	0.77202	0.92111	0.63107	2	0	Median	1.2065	1.1534	19.863	3	1	Median	0.96723	1.0212	20.019	2	0	Median	1474400000	749050000	725310000	351870000	174320000	177550000	481770000	268260000	213510000	425680000	201160000	224520000	215050000	105310000	109730000	4490	4212	4226	27651;27652;27653;27654;27655;27656;27657;27658;27659	37843;37844;37845;37846;37847;37848;37849;37850;37851;37852;37853;37854;37855	37851			13	
AQLADSFHLQQFFR	0	Unmodified	1706.8529	0.85288884	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		86.315	85.525	3	3.5115E-10	70183	160511_QHF_FH_JSI9i_3	141.54	130.48			0.6895	0.79581	18.59	3	1	Plateau	1.1873	0.96172	NaN	1	0	Median	0.6895	0.79581	NaN	1	0	Median	0.71643	0.66312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	179280000	93815000	85461000	25628000	11727000	13901000	67120000	32672000	34448000	86528000	49415000	37113000	0	0	0	4491	2470	4227	27660;27661;27662	37856;37857;37858;37859;37860;37861	37860			6	
AQLAHYNFQFVVGQK	1	Unmodified	1748.8998	0.89983903	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	16	0									4	1	1	1	1	73.347	64.635	3	0.0004742	33886	160513_QHF_FH_JSI12Kac_6	62.287	56.859			0.89719	0.87785	17.848	4	0	Median	1.1462	0.97038	NaN	1	0	Median	0.61556	0.70704	NaN	1	0	Median	0.81245	0.79415	NaN	1	0	Median	0.99077	1.0414	NaN	1	0	Median	221510000	113330000	108180000	60482000	28550000	31931000	82756000	47385000	35371000	40080000	19051000	21029000	38193000	18347000	19846000	4492	4495	4228	27663;27664;27665;27666	37862	37862			1	
AQLDPAFIK	1	Unmodified	1001.5546	0.55458155	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.57	5	1					2			2	1	4	1	54.353	51.605	2	2.1238E-05	46382	160511_QHF_FH_JSI10i_1	106.42	79.461			1.1781	1.0614	17.065	5	3	Median	1.3005	1.0614	NaN	1	1	Median	0.90177	1.0452	NaN	1	0	Median	1.2771	1.2655	28.278	2	2	Median	1.1781	1.2235	NaN	1	0	Median	675650000	326860000	348790000	131130000	60765000	70368000	199510000	106410000	93095000	193540000	98488000	95048000	151480000	61193000	90283000	4493	1256	4229	27667;27668;27669;27670;27671;27672;27673;27674	37863;37864;37865;37866;37867;37868;37869;37870;37871;37872	37867			10	
AQLEAHLGQVMESVR	0	Unmodified	1666.8461	0.8460889	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	59.325	59.191	2;3	2.9121E-15	52551	160511_QHF_FH_JSI11i_3	169.04	147.58			0.70824	0.69236	16.421	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77743	0.73647	11.586	2	0	Median	0.60981	0.61736	19.065	2	1	Median	553510000	296200000	257310000	0	0	0	0	0	0	352480000	188200000	164280000	201030000	107990000	93034000	4494	2270	4230	27675;27676;27677;27678	37873;37874;37875;37876;37877;37878	37876			5	
AQLELEVSK	1	Unmodified	1015.555	0.55497548	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.754	40.431	2	0.059714	36527	160511_QHF_FH_JSI11i_1	42.312	16.738			0.29115	0.2821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29115	0.2821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97039000	76313000	20726000	0	0	0	0	0	0	97039000	76313000	20726000	0	0	0	4495	2573	4231	27679	37879	37879			1	
AQLENEK	1	Unmodified	830.4134	0.41339662	1426	P35241;Q69YQ0	RDX;SPECC1L	Radixin;Cytospin-A	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	1	2	3	6.532	4.1997	2	0.011599	3965	160511_QHF_FH_JSI12i_1	77.058	22.532			1.446	1.4104	23.936	7	5	Median	1.2666	1.0141	NaN	1	0	Median	0.80504	0.94032	NaN	1	0	Median	1.5777	1.5504	13.386	2	2	Median	1.4869	1.5703	11.586	3	3	Median	3827400000	1810200000	2017200000	942130000	408740000	533390000	1016900000	521420000	495490000	815120000	392570000	422550000	1053200000	487490000	565750000	4496	1426	4232	27680;27681;27682;27683;27684;27685;27686	37880;37881;37882;37883;37884;37885;37886	37882			7	
AQLENHEPEEEEEEEMETEEK	1	Unmodified	2587.0392	0.03916638	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.914	36.304	3	1.6972E-46	32426	160511_QHF_FH_JSI10i_1	205.43	202.29			0.98405	0.92136	11.298	4	0	Median	1.0425	0.85415	NaN	1	0	Median	0.81221	0.95363	NaN	1	0	Median	0.92885	0.89018	NaN	1	0	Median	1.0625	1.1049	NaN	1	0	Median	631130000	335970000	295160000	74838000	32802000	42036000	252720000	149350000	103370000	151350000	76883000	74470000	152220000	76942000	75278000	4497	3563	4233	27687;27688;27689;27690	37887;37888;37889;37890;37891;37892;37893;37894;37895;37896	37894			10	
AQLEPLQQHLQDSQQEISSMQMK	1	Unmodified	2696.2898	0.28979937	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	70.528	69.953	3	7.2112E-14	62069	160511_QHF_FH_JSI10i_2	105.67	92.399			0.83665	0.82852	16.745	5	3	Median	0.96099	0.82852	NaN	1	0	Median	0.66822	0.80082	NaN	1	1	Median	1.1448	1.1865	NaN	1	0	Median	0.80353	0.82405	4.1421	2	2	Median	163330000	88571000	74757000	41508000	22717000	18791000	26130000	16934000	9196200	21518000	10510000	11008000	74172000	38410000	35762000	4498	1537	4234	27691;27692;27693;27694;27695;27696	37897;37898;37899;37900;37901;37902;37903;37904;37905;37906	37904			10	
AQLEPVASPAK	1	Unmodified	1109.6081	0.60807369	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	29.799	27.542	2	3.5481E-05	24226	160511_QHF_FH_JSI10i_1	112.75	93.654			0.77424	0.78525	37.734	5	1	Median	0.54045	0.44093	NaN	1	0	Median	0.60979	0.70757	NaN	1	0	Median	1.1352	1.0943	7.395	2	0	Median	0.77424	0.78525	NaN	1	1	Median	505180000	268660000	236520000	131630000	72135000	59491000	153580000	94756000	58827000	106410000	36131000	70279000	113560000	65638000	47927000	4499	2636	4235	27697;27698;27699;27700;27701	37907;37908;37909;37910;37911;37912	37910			6	
AQLEQGEPVLETPVESQQHEIESR	0	Unmodified	2732.3253	0.32531648	1776	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			57.161	56.389	3	3.3502E-12	50821	160511_QHF_FH_JSI10i_1	110.94	99.153			1.0331	1.0065	28.641	2	2	Median	1.5121	1.2325	NaN	1	1	Median	0.70587	0.822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74952000	37766000	37186000	34734000	14692000	20042000	40218000	23074000	17144000	0	0	0	0	0	0	4500	1776	4236	27702;27703;27704	37913;37914;37915	37913			3	
AQLEQSVEENK	1	Unmodified	1273.615	0.61500956	4241	Q96SB3	PPP1R9B	Neurabin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	19.531	19.027	2	7.0533E-09	16458	160511_QHF_FH_JSI12i_1	120.06	80.06			1.2663	1.149	46.822	4	2	Median	1.286	1.0899	NaN	1	0	Median	0.42	0.4764	NaN	1	1	Median	1.2719	1.2113	NaN	1	0	Median	1.2608	1.3104	NaN	1	1	Median	105090000	53551000	51539000	36710000	19569000	17141000	23604000	15819000	7784900	25363000	9791700	15572000	19412000	8371000	11041000	4501	4241	4237	27705;27706;27707;27708;27709	37916;37917;37918;37919;37920;37921;37922	37919			7	
AQLETALK	1	Unmodified	872.49673	0.49673232	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	25.987	25.287	2	0.0025958	22556	160511_QHF_FH_JSI12i_1	86.794	58.687			0.85251	1.0107	36.36	3	1	Plateau	1.1026	0.91209	NaN	1	0	Median	0.85251	1.0107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7093	1.791	NaN	1	1	Median	181090000	80221000	100870000	53737000	20078000	33659000	68048000	38377000	29671000	0	0	0	59305000	21767000	37539000	4502	4856	4238	27710;27711;27712	37923;37924	37923			2	
AQLFALTGVQPAR	0	Unmodified	1370.767	0.76703394	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.57	3	6	4				2	5	4	5	8	6	5	72.758	67.865	2;3	2.8088E-22	59580	160511_QHF_FH_JSI12i_3	177.57	148.1			0.97174	0.97242	11.444	24	8	Median	1.1197	0.9644	8.5048	5	1	Median	0.81808	0.97911	14.895	8	3	Median	1.0593	1.0344	8.9364	6	2	Median	0.85304	0.77731	11.885	5	2	Linear	3268400000	1719300000	1549100000	578620000	259010000	319610000	851570000	481400000	370170000	945450000	496710000	448740000	892750000	482220000	410540000	4503	1824	4239	27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731;27732;27733;27734;27735;27736	37925;37926;37927;37928;37929;37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946;37947;37948;37949;37950;37951;37952;37953;37954;37955	37951			31	
AQLFTQITR	0	Unmodified	1076.5978	0.59784335	612	O94829	IPO13	Importin-13	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			4.8582	4.3812	3	0.027747	2446	160511_QHF_FH_JSI10i_3	22.086	10.922			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4504	612	4240	27737	37956	37956			1	
AQLGEDIR	0	Unmodified	900.46649	0.46649483	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.87	5						2			1	2	2	2	23.853	20.76	2	9.602E-05	17901	160511_QHF_FH_JSI11i_1	130.27	67.557			0.89238	0.83241	22.856	6	3	Median	0.96659	0.79587	NaN	1	0	Median	0.68063	0.80671	NaN	1	1	Median	0.92599	0.90263	20.274	2	1	Median	1.0179	1.0968	34.572	2	1	Median	1924600000	1042100000	882530000	466720000	226480000	240240000	480560000	285270000	195290000	493680000	281380000	212300000	483660000	248950000	234710000	4505	3876	4241	27738;27739;27740;27741;27742;27743;27744	37957;37958;37959;37960;37961;37962;37963;37964	37957			8	
AQLGEDIRR	0	Unmodified	1056.5676	0.56760585	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			16.395	15.385	2	0.023658	12409	160511_QHF_FH_JSI10i_3	46.426	15.814			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4506	3876	4242	27745	37965	37965			1	
AQLGGPEAAK	1	Unmodified	940.49779	0.49779495	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	5.81	4	4	2		3	4	3		1	5	6	5	5	15.993	11.416	2	2.0646E-10	10446	160511_QHF_FH_JSI11i_1	140.75	114.15			0.99088	1.0424	13.266	20	0	Median	1.1147	0.91407	14.568	4	0	Median	0.74988	1.0179	7.0623	6	0	Linear	1.1657	1.1513	18.936	5	0	Median	0.99332	1.0721	9.3587	5	0	Median	21094000000	10248000000	10846000000	5573800000	2485300000	3088500000	5669700000	3088000000	2581700000	5102100000	2367600000	2734600000	4748500000	2306900000	2441600000	4507	814	4243	27746;27747;27748;27749;27750;27751;27752;27753;27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766	37966;37967;37968;37969;37970;37971;37972;37973;37974;37975;37976;37977;37978;37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989;37990;37991;37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004;38005;38006;38007;38008;38009;38010;38011	37968			46	
AQLGKLLK	2	Acetyl (K);Acetyl (Protein N-term)	953.59097	0.59096706	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	1.12				2	3	5	4	1		3	5	3	4	78.953	69.586	2	0.00010168	28522	160513_QHF_FH_JSI11Kac_2	66.682	23.436			0.98711	1.0899	12.727	10	0	Median	1.4085	1.1046	8.3555	2	0	Median	0.98711	1.1876	4.9099	4	0	Linear	0.99204	0.96808	18.77	2	0	Median	0.84011	0.90593	1.0868	2	0	Median	467640000	237290000	230360000	79185000	32503000	46681000	127160000	64608000	62556000	49595000	24559000	25037000	211700000	115620000	96084000	4508	2442	4244	27767;27768;27769;27770;27771;27772;27773;27774;27775;27776;27777;27778;27779;27780;27781	38012;38013;38014;38015;38016;38017;38018;38019;38020;38021;38022;38023;38024;38025;38026;38027;38028;38029	38012	2479		17	
AQLGLGHSYSR	0	Unmodified	1187.6047	0.60471964	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			22.502	21.238	3	0.0046846	17184	160511_QHF_FH_JSI9i_3	45.357	33.825			0.89688	0.87373	5.6688	2	1	Median	1.119	0.90946	NaN	1	1	Median	0.71886	0.8394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101880000	52527000	49353000	56870000	28138000	28732000	45009000	24388000	20621000	0	0	0	0	0	0	4509	153	4245	27782;27783	38030;38031	38031			2	
AQLGPDESK	1	Unmodified	943.46108	0.4610751	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	1	3	14.765	9.2128	2	1.1245E-10	9143	160511_QHF_FH_JSI12i_1	136.57	104.21			0.98866	1.101	15.554	4	1	Median	NaN	NaN	NaN	0	0	Median	0.94481	1.1174	NaN	1	0	Median	1.1262	1.0848	NaN	1	0	Median	0.89121	0.95652	22.88	2	1	Median	344820000	190050000	154770000	0	0	0	3199900	1705900	1494000	7207900	3577800	3630100	334410000	184760000	149650000	4510	1012	4246	27784;27785;27786;27787;27788;27789;27790;27791	38032;38033;38034;38035;38036;38037;38038;38039;38040	38033			9	
AQLGVQAFADALLIIPK	1	Unmodified	1767.0295	0.02945622	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	6.9		5	1						7	3	3	3	4	99.186	93.333	2;3	1.24E-42	48316	160513_QHF_FH_JSI12Kac_6	230.36	174.96			0.93809	0.93465	17.191	9	9	Median	1.6365	1.3991	NaN	1	1	Median	0.77665	0.92457	24.888	2	2	Median	0.93809	0.93465	5.0061	3	3	Median	0.87061	0.92328	12.003	3	3	Median	2402300000	1337800000	1064500000	151020000	60838000	90183000	460780000	269590000	191190000	1138500000	639320000	499130000	652010000	368020000	283990000	4511	1494	4247	27792;27793;27794;27795;27796;27797;27798;27799;27800;27801;27802;27803;27804	38041;38042;38043;38044;38045;38046;38047;38048;38049;38050;38051;38052;38053;38054	38052			14	
AQLHDTNMELTDLK	1	Unmodified	1627.7876	0.78757097	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	2	3	2	48.036	47.065	2;3	9.9689E-05	40415	160511_QHF_FH_JSI11i_2	110.38	85.588			0.80453	0.95522	22.952	7	1	Median	0.75666	0.66572	NaN	1	0	Median	0.7296	0.89353	11.436	2	1	Median	0.87956	0.87291	12.743	2	0	Median	1.0744	1.1993	18.601	2	0	Median	754050000	415240000	338810000	127180000	66045000	61133000	164130000	102720000	61411000	256980000	146290000	110690000	205770000	100200000	105570000	4512	227	4248	27805;27806;27807;27808;27809;27810;27811;27812	38055;38056;38057;38058;38059;38060;38061	38059			5	
AQLLEIAK	1	Unmodified	884.53312	0.53311783	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	46.004	45.476	2	0.022691	41473	160511_QHF_FH_JSI12i_1	54.776	26.522			1.5454	1.5343	23.407	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8285	1.8105	NaN	1	1	Median	1.3061	1.3003	NaN	1	1	Median	42844000	19064000	23780000	0	0	0	0	0	0	26664000	11739000	14925000	16181000	7325800	8854800	4513	1141	4249	27813;27814	38062;38063	38063			2	
AQLLEPSK	1	Unmodified	884.49673	0.49673232	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		31.802	22.68	2	0.010627	14392	160513_QHF_FH_JSI11Kac_4	66.351	27.559			0.7549	0.75698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7549	0.75698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3500300	1789200	1711100	0	0	0	0	0	0	3500300	1789200	1711100	0	0	0	4514	1843	4250	27815	38064	38064			1	
AQLLQPTLEINPR	0	Unmodified	1491.8409	0.84092717	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	5.88	1	7	5				3	4		4	5	5	6	71.63	67.565	2;3	7.7876E-80	59288	160511_QHF_FH_JSI12i_3	215.06	188.27			0.97708	1.0171	16.321	18	5	Median	1.1613	0.96375	28.433	4	3	Median	0.85779	1.0117	8.2705	5	1	Median	0.99725	1.0198	12.846	4	0	Median	1.0455	1.0725	7.5664	5	1	Median	3156800000	1607900000	1548900000	887340000	413450000	473900000	515810000	289090000	226730000	868850000	443410000	425440000	884780000	461970000	422810000	4515	2328	4251	27816;27817;27818;27819;27820;27821;27822;27823;27824;27825;27826;27827;27828;27829;27830;27831;27832;27833;27834;27835	38065;38066;38067;38068;38069;38070;38071;38072;38073;38074;38075;38076;38077;38078;38079;38080;38081;38082;38083;38084;38085;38086;38087;38088;38089;38090;38091;38092	38092			28	
AQLLVVGSPGPVPR	0	Unmodified	1388.814	0.81398414	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	5.92		4	4			1	4	7	2	4	7	6	5	69.635	62.793	2;3	1.8229E-30	33483	160513_QHF_FH_JSI11Kac_5	170.52	144.48			1.2065	1.1265	16.691	22	2	Median	1.2503	1.0647	3.7239	4	1	Median	0.82277	0.98374	13.995	7	0	Median	1.2254	1.2203	16.641	6	1	Median	1.2892	1.3813	15.512	5	0	Median	1258500000	607280000	651180000	207690000	94249000	113440000	287620000	155320000	132290000	459830000	209750000	250080000	303310000	147950000	155360000	4516	1388	4252	27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848;27849;27850;27851;27852;27853;27854;27855;27856;27857	38093;38094;38095;38096;38097;38098;38099;38100;38101;38102;38103;38104;38105;38106;38107;38108;38109;38110;38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121	38111			29	
AQLMADFQAGR	0	Unmodified	1206.5815	0.58154136	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		47.15	46.893	2	0.0001532	40390	160511_QHF_FH_JSI11i_2	94.297	54.252			0.6142	0.59913	89.649	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6142	0.59913	89.649	2	1	Median	NaN	NaN	NaN	0	0	Median	138690000	80104000	58590000	0	0	0	0	0	0	138690000	80104000	58590000	0	0	0	4517	2636	4253	27858;27859	38122;38123;38124	38124			3	
AQLPVMVIVTPQDRK	1	Unmodified	1693.9549	0.95491107	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		70.389	69.661	3	2.3247E-05	58525	160511_QHF_FH_JSI10i_3	106.52	101.1			1.0223	1.0774	11.395	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85073	0.99397	NaN	1	0	Median	1.2286	1.1678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64560000	32233000	32327000	0	0	0	27552000	15568000	11985000	37008000	16665000	20343000	0	0	0	4518	4749	4254	27860;27861	38125	38125			1	
AQLPVVVFTFSR	0	Unmodified	1362.766	0.76597131	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	89.708	84.192	2	1.5945E-12	43941	160513_QHF_FH_JSI11Kac_6	129.7	111.39			1.1418	0.97045	9.3441	6	1	Linear	1.2013	1.0229	NaN	1	0	Median	0.82134	0.97591	NaN	1	0	Median	1.1438	1.0795	8.6504	2	1	Median	1.1531	1.1757	9.2582	2	0	Median	807430000	394780000	412650000	122310000	53291000	69016000	331770000	181160000	150610000	207150000	92181000	114970000	146210000	68154000	78052000	4519	2677	4255	27862;27863;27864;27865;27866;27867	38126;38127;38128;38129;38130;38131;38132;38133;38134	38128			9	
AQLQEYQDK	1	Unmodified	1121.5353	0.53530267	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		15.277	15.154	2	0.0071507	12636	160511_QHF_FH_JSI11i_1	54.722	37.337			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4520	2574	4256	27868	38135	38135			1	
AQLQKGMVK	2	Oxidation (M)	1017.5641	0.56410038	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	14.5	0.5							2	2		1		2	1	48.812	38.389	2	0.025462	21431	160513_QHF_FH_JSI11Kac_5	60.788	50.078			1.7644	2.3604	27.138	4	0	Linear	1.5835	1.3239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7549	1.7325	16.339	2	0	Median	2.2435	2.4624	NaN	1	0	Median	29534000	12221000	17312000	4355500	1832000	2523500	0	0	0	14357000	4640200	9716500	10821000	5749200	5072200	4521	2155	4257	27869;27870;27871;27872	38136;38137;38138	38138			0	
AQLQNFVK	1	Unmodified	946.52362	0.52361577	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		36.38	35.683	2	0.029279	30376	160511_QHF_FH_JSI11i_2	41.84	16.103			1.8906	2.1441	20.608	2	0	Median	NaN	NaN	NaN	0	0	Median	2.0112	2.4805	NaN	1	0	Median	1.7772	1.8534	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70849000	28310000	42539000	0	0	0	31105000	13263000	17842000	39744000	15047000	24697000	0	0	0	4522	2620	4258	27873;27874	38139	38139			1	
AQLQQHNLEMVGEGTRQ	0	Unmodified	1937.9378	0.93775745	2720	Q15853	USF2	Upstream stimulatory factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	35.542	34.902	3	0.00013189	30658	160511_QHF_FH_JSI10i_2	62.203	55.786			1.1542	1.0123	25.938	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.8722	1.0631	34.658	2	1	Median	1.3577	1.2317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97771000	37595000	60176000	0	0	0	57264000	23172000	34092000	40508000	14424000	26084000	0	0	0	4523	2720	4259	27875;27876;27877;27878;27879;27880;27881	38140;38141;38142;38143;38144;38145;38146	38143			7	
AQLQQVEAALSGNGENEDLLK	1	Unmodified	2226.1128	0.11280451	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	82.664	82.196	2;3	2.2705E-13	74954	160511_QHF_FH_JSI12i_1	121.82	112.07			0.9906	1.0189	7.7919	4	0	Median	1.1433	0.9721	NaN	1	0	Median	0.90158	1.0739	NaN	1	0	Median	1.0884	1.0681	NaN	1	0	Median	0.89573	0.91403	NaN	1	0	Median	253540000	143150000	110390000	32487000	15820000	16666000	63721000	35880000	27840000	91214000	56205000	35009000	66119000	35248000	30871000	4524	588	4260	27882;27883;27884;27885;27886	38147;38148;38149;38150;38151;38152;38153	38151			7	
AQLSDYSDIVTTLDLAPPTK	1	Unmodified	2147.0998	0.099780209	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	100.58	100.46	2;3	3.1321E-18	88729	160511_QHF_FH_JSI9i_1	141.55	63.777			0.62958	0.74795	35.21	5	0	Median	NaN	NaN	NaN	0	0	Median	0.62958	0.74795	NaN	1	0	Median	0.76622	0.73871	58.613	2	0	Median	0.74226	0.77704	38.686	2	0	Median	212570000	119400000	93167000	11677000	11677000	0	67961000	36413000	31548000	57616000	35692000	21924000	75313000	35618000	39695000	4525	396	4261	27887;27888;27889;27890;27891;27892	38154;38155;38156;38157;38158;38159;38160;38161	38161			8	
AQLSPGIYDDTSAR	0	Unmodified	1492.7158	0.71578623	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			41.541	41.139	2	0.010887	36934	160511_QHF_FH_JSI10i_1	71.555	49.562			0.058613	0.070645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.058613	0.070645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67041000	58537000	8504900	0	0	0	67041000	58537000	8504900	0	0	0	0	0	0	4526	513	4262	27893	38162	38162			1	
AQLSVVDPDSAPGEIEYEVQR	0	Unmodified	2301.1125	0.11247016	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	6									1	3		2	75.7	75.402	2;3	3.1067E-17	68364	160511_QHF_FH_JSI10i_1	118.13	105.01			0.86033	0.97721	40.105	3	1	Median	NaN	NaN	NaN	0	0	Median	0.67995	0.77942	31.983	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2877	1.3833	NaN	1	0	Median	97007000	51555000	45453000	0	0	0	59858000	31155000	28702000	0	0	0	37150000	20399000	16750000	4527	3146	4263	27894;27895;27896;27897;27898;27899	38163;38164;38165;38166;38167;38168;38169	38168			7	
AQLTLLGTEMDYVEDK	1	Unmodified	1824.8815	0.88153093	4439	Q9BUE6	ISCA1	Iron-sulfur cluster assembly 1 homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	86.652	86.522	2	1.0724E-21	78860	160511_QHF_FH_JSI12i_1	134.98	80.277			1.3306	1.5081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3306	1.5081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29943000	17098000	12845000	0	0	0	29943000	17098000	12845000	0	0	0	0	0	0	4528	4439	4264	27900;27901	38170;38171	38170			2	
AQLTQLFLASVLECPFYK	1	Unmodified	2127.1074	0.10744854	2593	Q14CZ7	FASTKD3	FAST kinase domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		105.97	105.91	3	0.019402	93456	160511_QHF_FH_JSI11i_2	18.234	9.3022			0.97444	1.2363	22.952	4	0	Linear	1.164	1.0301	NaN	1	0	Median	0.91245	1.0375	NaN	1	0	Median	0.85453	0.86052	35.266	2	0	Median	NaN	NaN	NaN	0	0	Median	88413000	44874000	43539000	15602000	9042100	6560000	24173000	12240000	11932000	48638000	23591000	25046000	0	0	0	4529	2593	4265	27902;27903;27904;27905	38172	38172			1	
AQLVKEDK	2	Acetyl (K)	971.52876	0.52876073	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		24.243	16.68	2	0.034285	10564	160513_QHF_FH_JSI11Kac_3	60.91	24.725			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1803200	1803200	0	0	0	0	0	0	0	1803200	1803200	0	0	0	0	4530	1554	4266	27906	38173	38173			1	
AQLVVIAHDVDPIELVVFLPALCR	0	Unmodified	2686.488	0.4880289	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	98.489	90.604	2;3	1.1389E-92	54124	160513_QHF_FH_JSI10Kac_6	224.19	212.93			1.0761	1.1652	16.96	5	0	Median	1.1343	0.968	NaN	1	0	Median	1.0254	1.215	5.912	2	0	Median	1.0692	1.0072	NaN	1	0	Median	1.3947	1.4653	NaN	1	0	Median	1954300000	924230000	1030100000	393540000	193980000	199550000	1022400000	485620000	536790000	339440000	156050000	183390000	198920000	88581000	110330000	4531	2007	4267	27907;27908;27909;27910;27911	38174;38175;38176;38177	38176			4	
AQLVVIAHDVDPIELVVFLPALCRK	1	Unmodified	2814.583	0.58299191	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	96.991	89.112	3;4	1.2625E-110	52855	160513_QHF_FH_JSI10Kac_6	232.06	210.71			1.1318	1.0802	18.08	5	0	Median	1.253	1.0802	NaN	1	0	Median	1.1974	1.4251	7.3629	2	0	Median	1.0129	0.97149	NaN	1	0	Median	0.99981	1.0763	NaN	1	0	Median	1177900000	568020000	609900000	116960000	57901000	59057000	835880000	398120000	437760000	82898000	43036000	39862000	142190000	68968000	73227000	4532	2007	4268	27912;27913;27914;27915;27916	38178;38179;38180;38181	38180			4	
AQMALWTVLAAPLLMSTDLR	0	Unmodified	2200.1748	0.1748166	1107	P17050	NAGA	Alpha-N-acetylgalactosaminidase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101	91.825	3	0.00024695	53098	160513_QHF_FH_JSI9Kac_6	83.776	66.897			1.1191	0.9819	NaN	1	1	Median	1.1191	0.9819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29289000	12520000	16769000	29289000	12520000	16769000	0	0	0	0	0	0	0	0	0	4533	1107	4269	27917	38182	38182			1	
AQMVQEDLEK	1	Unmodified	1189.5649	0.56488824	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	32.824	28.719	2	9.3394E-20	24855	160511_QHF_FH_JSI9i_1	182.16	158.73			0.9561	1.0527	19.389	7	0	Median	1.0304	0.84204	NaN	1	0	Median	0.81588	0.97186	14.041	2	0	Median	0.90156	0.8832	26.279	2	0	Median	1.0861	1.177	15.786	2	0	Median	7829300000	3515800000	4313500000	1430900000	608570000	822360000	2133600000	909640000	1223900000	2190400000	1045500000	1144900000	2074400000	952080000	1122300000	4534	1270	4270	27918;27919;27920;27921;27922;27923;27924;27925	38183;38184;38185;38186;38187;38188;38189;38190;38191;38192;38193;38194;38195;38196;38197;38198	38194			16	
AQMVQEDLEK	1	Oxidation (M)	1205.5598	0.55980286	1270	P26038	MSN	Moesin	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.67	4.99	7					2				3	1	2	3	28.448	25.908	2	7.447E-11	25316	160511_QHF_FH_JSI11i_1	147.74	108.72			0.8279	0.8498	63.075	6	2	Median	0.73345	0.60529	97.151	2	1	Median	0.25693	0.30506	NaN	1	0	Median	0.76204	0.7468	NaN	1	0	Median	0.96354	1.0384	10.069	2	1	Median	883080000	474700000	408380000	524850000	295990000	228860000	43231000	34038000	9193000	300590000	136640000	163950000	14414000	8037800	6376500	4535	1270	4270	27926;27927;27928;27929;27930;27931;27932;27933;27934	38199;38200;38201;38202;38203;38204;38205	38200		897	7	
AQNAESSLQQK	1	Unmodified	1202.5891	0.58912916	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	10.496	8.7354	2	4.8618E-06	7120	160511_QHF_FH_JSI10i_1	111.06	87.628			0.89868	0.90888	10.168	5	0	Median	1.1031	0.90888	NaN	1	0	Median	0.89868	1.0714	NaN	1	0	Median	0.97584	0.94023	14.72	2	0	Median	0.87232	0.89888	NaN	1	0	Median	218570000	106900000	111670000	54131000	24655000	29476000	54944000	27308000	27637000	57698000	30950000	26748000	51798000	23987000	27811000	4536	4255	4271	27935;27936;27937;27938;27939	38206;38207;38208;38209;38210;38211;38212;38213;38214;38215	38212			10	
AQNDLIWNIK	1	Unmodified	1213.6455	0.64552182	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.43	1	8	1				4			4	3	5	2	67.632	63.48	2	2.182E-24	55136	160511_QHF_FH_JSI11i_2	161.63	121.63			0.95177	1.0144	55.845	12	5	Median	1.2257	1.0398	37.184	3	1	Median	0.79425	1.1283	20.964	3	2	Plateau	0.77438	0.7825	55.147	4	2	Linear	0.48427	0.52687	89.138	2	0	Median	1356900000	819330000	537540000	257400000	122500000	134890000	605980000	401630000	204340000	313810000	168040000	145770000	179690000	127150000	52540000	4537	939	4272	27940;27941;27942;27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953	38216;38217;38218;38219;38220;38221;38222;38223;38224;38225;38226;38227;38228;38229;38230	38227			15	
AQNDLIWNIKDELK	2	Unmodified	1698.8941	0.89408495	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	77.599	77.201	2;3	5.8198E-05	67079	160511_QHF_FH_JSI12i_3	84.874	59.156			0.939	1.1327	51.366	5	1	Median	0.939	0.80323	NaN	1	0	Median	0.91446	1.1327	NaN	1	0	Median	0.91972	0.85934	NaN	1	0	Median	1.9969	1.9956	52.159	2	1	Median	688470000	346380000	342090000	65733000	34508000	31225000	99444000	51663000	47781000	147030000	78481000	68550000	376260000	181730000	194530000	4538	939	4273	27954;27955;27956;27957;27958	38231;38232;38233;38234;38235;38236;38237;38238;38239	38238			9	
AQNDLIWNIKDELKK	3	Unmodified	1826.989	0.98904797	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			71.768	70.311	4	0.0042912	58954	160511_QHF_FH_JSI10i_3	52.862	32.125			0.65057	0.76219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65057	0.76219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27176000	15404000	11772000	0	0	0	27176000	15404000	11772000	0	0	0	0	0	0	4539	939	4274	27959	38240	38240			1	
AQNIMESFENPFR	0	Unmodified	1581.7246	0.72457678	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	1	4	83.343	82.714	2	5.6924E-07	71710	160511_QHF_FH_JSI12i_3	93.442	72.443			0.90945	0.90588	32.359	7	6	Median	0.87863	0.759	14.978	2	2	Median	0.69184	0.84665	12.106	2	2	Median	0.90945	0.90588	NaN	1	1	Median	1.3142	1.3806	42.684	2	1	Median	260870000	147150000	113720000	76813000	47629000	29183000	77597000	50236000	27361000	43055000	22384000	20670000	63407000	26905000	36502000	4540	2175	4275	27960;27961;27962;27963;27964;27965;27966;27967;27968	38241;38242;38243;38244;38245;38246;38247;38248;38249;38250	38249			10	
AQNISSNANMLR	0	Unmodified	1317.6459	0.64593253	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		29.508	29.134	2	0.0041056	24648	160511_QHF_FH_JSI11i_2	56.563	34.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4541	2485	4276	27969;27970	38251;38252	38252			2	
AQNKPFYVVAESFK	2	Unmodified	1626.8406	0.84059282	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	61.919	61.324	2;3	5.0646E-05	54212	160511_QHF_FH_JSI11i_3	103.21	85.296			0.73801	0.78154	22.454	6	0	Median	1.4704	1.198	NaN	1	0	Median	0.6911	0.80722	NaN	1	0	Median	0.77747	0.73005	12.061	2	0	Median	0.67833	0.69619	13.931	2	0	Median	445290000	211760000	233530000	23575000	10160000	13415000	18290000	9155200	9135200	221150000	108500000	112650000	182270000	83940000	98329000	4542	2518	4277	27971;27972;27973;27974;27975;27976	38253;38254;38255;38256;38257;38258;38259	38253			7	
AQNKPFYVVAESFK	2	Acetyl (K)	1668.8512	0.8511575	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		85.017	74.5	2	0.019065	39275	160513_QHF_FH_JSI11Kac_5	59.542	43.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	869770	869770	0	0	0	0	0	0	0	869770	869770	0	0	0	0	4543	2518	4277	27977	38260	38260	2513		1	
AQNLKDLAGR	1	Acetyl (K);Acetyl (Protein N-term)	1168.62	0.62003536	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	73.2	64.607	2	0.0004176	28053	160513_QHF_FH_JSI12Kac_2	82.287	69.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4544	4296	4278	27978;27979;27980	38261;38262;38263	38263	3114		3	
AQNLNPMVDVK	1	Oxidation (M)	1243.6231	0.62307182	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.062	31.459	2	0.0018423	28042	160511_QHF_FH_JSI11i_1	87.258	50.701			0.75563	0.72219	12.284	4	2	Median	0.81681	0.66515	NaN	1	0	Median	0.69903	0.81214	NaN	1	1	Median	0.81928	0.78412	NaN	1	1	Median	0.5866	0.63146	NaN	1	0	Median	115650000	69542000	46104000	13744000	7960800	5783100	29098000	16461000	12637000	35804000	20192000	15612000	37000000	24928000	12072000	4545	5233	4279	27981;27982;27983;27984	38264;38265;38266	38264		2610	3	
AQNLNPMVDVK	1	Unmodified	1227.6282	0.6281572	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.8	4.66	3		1			1				1	2	2		44.733	44.054	2	2.4342E-06	39676	160511_QHF_FH_JSI11i_1	118.03	96.348			1.005	0.82263	4.6783	3	3	Plateau	1.005	0.82183	NaN	1	1	Median	0.76202	0.90234	NaN	1	1	Median	0.89307	0.86458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1631900000	918970000	712920000	601430000	290750000	310680000	486760000	314410000	172340000	543710000	313810000	229900000	0	0	0	4546	5233	4279	27985;27986;27987;27988;27989	38267;38268;38269;38270;38271;38272;38273	38267			7	
AQNSSGVMGGPQK	1	Unmodified	1259.5928	0.59283433	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.613	11.21	2	6.9645E-05	9141	160511_QHF_FH_JSI12i_1	103.34	49.374			0.86638	0.82533	11.868	4	0	Median	1.0323	0.87461	NaN	1	0	Median	0.63779	0.71665	NaN	1	0	Median	0.82799	0.77883	NaN	1	0	Median	0.90655	0.93534	NaN	1	0	Median	121290000	64726000	56563000	29656000	15262000	14394000	32713000	19639000	13074000	24025000	10900000	13124000	34895000	18925000	15970000	4547	3330	4280	27990;27991;27992;27993	38274;38275;38276;38277;38278;38279;38280;38281	38277			8	
AQNTWGCGNSLR	0	Unmodified	1362.6099	0.60988137	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.33	3	4	6					4	3	5	5	5	5	29.022	25.218	2	2.2285E-14	20543	160511_QHF_FH_JSI9i_3	136.63	113.21			0.95594	1.0315	22.812	19	1	Median	1.2461	1.0723	15.039	4	0	Median	0.88424	1.0856	23.64	5	0	Median	0.83629	0.81863	4.8111	5	1	Median	1.1542	1.2865	17.26	5	0	Median	1461900000	733530000	728360000	202030000	85759000	116270000	457220000	249670000	207550000	418490000	222500000	195990000	384150000	175600000	208550000	4548	791	4281	27994;27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013	38282;38283;38284;38285;38286;38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297;38298;38299;38300;38301;38302;38303;38304;38305;38306;38307;38308;38309;38310	38296			29	
AQPAAETTDGER	0	Unmodified	1244.5633	0.56330834	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		8.1461	7.7454	2	0.00017683	5480	160511_QHF_FH_JSI11i_1	98.048	77.719			1.1022	1.009	29.432	2	1	Median	0.97047	0.81941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2518	1.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57207000	29551000	27656000	30329000	18572000	11757000	0	0	0	26878000	10980000	15898000	0	0	0	4549	2420	4282	28014;28015;28016	38311;38312;38313	38311			3	
AQPAQPADEPAEK	1	Unmodified	1350.6416	0.64155866	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	5.05	4	1	1	3	5					1	4	4	5	16.066	11.495	2;3	4.7847E-53	9971	160511_QHF_FH_JSI12i_1	220.25	175.09			0.97603	0.99671	12.176	13	0	Median	1.1441	0.93121	NaN	1	0	Median	0.85958	0.99797	19.805	4	0	Median	1.0161	0.99671	4.7544	3	0	Median	0.97603	1.0526	9.1372	5	0	Median	6375600000	3253700000	3121900000	1392600000	661760000	730830000	1666200000	895500000	770720000	1778900000	915340000	863590000	1537900000	781140000	756760000	4550	1264	4283	28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030	38314;38315;38316;38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329;38330;38331;38332;38333;38334;38335;38336;38337;38338	38318			25	
AQPARPPPPAQPGEIGEAIAK	1	Unmodified	2094.1222	0.12218741	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		47.63	46.847	3	0.00047618	41344	160511_QHF_FH_JSI11i_3	50.883	45.43			0.92271	0.94728	14.293	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92611	1.048	NaN	1	0	Median	0.91933	0.85622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78325000	38668000	39656000	0	0	0	31618000	17159000	14459000	46707000	21510000	25197000	0	0	0	4551	616	4284	28031;28032	38339;38340;38341;38342	38339			4	
AQPDTLR	0	Unmodified	799.41882	0.41881635	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	9.3844	9.0137	2	0.035554	6932	160511_QHF_FH_JSI12i_1	50.632	16.629			1.4213	1.4575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4213	1.4575	NaN	1	1	Median	98010000	43963000	54047000	0	0	0	0	0	0	0	0	0	98010000	43963000	54047000	4552	2128	4285	28033	38343	38343			1	
AQPEEEDEDEVSMK	1	Unmodified	1634.6618	0.66176133	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.751	26.174	2	5.9282E-05	23326	160511_QHF_FH_JSI12i_1	140.39	130.07			0.91653	1.091	11.822	4	0	Linear	1.1832	0.97586	NaN	1	0	Median	0.89065	1.0397	NaN	1	0	Median	1.3418	1.2796	NaN	1	0	Median	1.1136	1.145	NaN	1	0	Median	136090000	73155000	62937000	33729000	18266000	15463000	38113000	19996000	18117000	29851000	14556000	15295000	34400000	20337000	14063000	4553	2938	4286	28034;28035;28036;28037	38344;38345;38346;38347;38348;38349;38350;38351	38347			8	
AQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLK	1	Unmodified	3766.8108	0.81083219	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	79.482	79.08	3;4	9.9526E-06	72066	160511_QHF_FH_JSI12i_1	45.47	40.564			0.6066	0.75034	24.306	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76089	0.73579	31.056	2	2	Median	0.58592	0.61431	NaN	1	1	Median	61054000	47649000	13405000	0	0	0	0	0	0	40085000	30872000	9212900	20969000	16777000	4191800	4554	2140	4287	28038;28039;28040	38352;38353;38354	38354			3	
AQPGPASQPDVSLQQR	0	Acetyl (Protein N-term)	1719.854	0.85401105	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			46.132	45.706	2	0.019704	41110	160511_QHF_FH_JSI10i_1	35.204	20.002			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4555	2648	4288	28041	38355	38355			1	
AQPGSPWWR	0	Unmodified	1083.525	0.52501276	3451	Q8IXZ2	ZC3H3	Zinc finger CCCH domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.966	37.75	2	0.031707	33384	160511_QHF_FH_JSI9i_1	58.604	30.182			1.7126	1.3591	NaN	1	1	Median	1.7126	1.3591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26175000	9780500	16394000	26175000	9780500	16394000	0	0	0	0	0	0	0	0	0	4556	3451	4289	28042	38356	38356			1	
AQPGTLNLNNEVVK	1	Acetyl (Protein N-term)	1537.81	0.81002097	3637	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			64.439	64.069	2	0.027069	57983	160511_QHF_FH_JSI10i_1	36.952	21.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22054000	22054000	0	0	0	0	22054000	22054000	0	0	0	0	0	0	0	4557	3637	4290	28043	38357	38357			1	
AQPLAYYEAAVR	0	Unmodified	1350.6932	0.6932003	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	58.646	57.48	2	0.0028304	49362	160511_QHF_FH_JSI12i_2	56.404	29.89			0.4871	0.48148	29.759	2	1	Median	0.45335	0.39011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52336	0.59424	NaN	1	0	Median	86957000	56029000	30928000	38329000	23062000	15267000	0	0	0	0	0	0	48628000	32967000	15661000	4558	3477	4291	28044;28045	38358;38359	38358			2	
AQPLEDLAGFTELSETSGHTQESLTAGK	1	Unmodified	2916.3989	0.39887536	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.8	0.748	2	2	1									2	3	87.682	87.182	3	0.00069443	79381	160511_QHF_FH_JSI11i_1	37.637	30.606			0.94103	0.9721	23.395	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87876	0.85921	32.97	2	2	Median	0.94103	0.99331	18.563	2	1	Median	128610000	50851000	77754000	0	0	0	0	0	0	69676000	29205000	40471000	58929000	21646000	37283000	4559	1576	4292	28046;28047;28048;28049;28050	38360;38361;38362;38363;38364;38365	38360			6	
AQPLEDLAGLK	1	Unmodified	1153.6343	0.63428844	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.833	62.199	2	5.2214E-07	56645	160511_QHF_FH_JSI12i_1	114.84	69.76			1.3463	0.94616	33.394	4	0	Linear	0.79971	0.66412	NaN	1	0	Median	0.64599	0.77714	NaN	1	0	Median	1.3972	1.3603	NaN	1	0	Median	1.0946	1.1519	NaN	1	0	Median	759920000	414180000	345750000	142160000	86648000	55508000	126210000	83049000	43162000	263400000	135160000	128240000	228160000	109320000	118840000	4560	1576	4293	28051;28052;28053;28054	38366;38367;38368;38369;38370;38371;38372;38373	38369			8	
AQPLEDLASFQELSQTPGHTEELANGAADSFTSAPK	1	Unmodified	3756.7755	0.77549254	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	98.466	98.388	4	4.2534E-08	86316	160511_QHF_FH_JSI11i_2	56.252	53.4			1.3578	1.4021	29.821	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7237	1.7312	NaN	1	1	Median	1.0696	1.1355	NaN	1	1	Median	38005000	13825000	24181000	0	0	0	0	0	0	25144000	5705300	19439000	12861000	8119200	4741700	4561	1576	4294	28055;28056	38374;38375;38376	38374			3	
AQPLSLEELLAK	1	Unmodified	1310.7446	0.74456717	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.407	88.818	2	0.042316	78084	160511_QHF_FH_JSI11i_2	37.749	33.054			0.91637	0.91746	5.1237	4	0	Median	1.0608	0.89575	NaN	1	0	Median	0.73233	0.89327	NaN	1	0	Median	0.9325	0.93969	NaN	1	0	Median	0.90053	0.99627	NaN	1	0	Median	395370000	199890000	195480000	94163000	43115000	51048000	76313000	43158000	33155000	122840000	62923000	59916000	102050000	50693000	51358000	4562	4449	4295	28057;28058;28059;28060	38377;38378	38378			1	
AQPPDYTFPSGSGAHFPQVPGGAVR	0	Unmodified	2539.2244	0.22442065	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	70.477	69.804	3	0.00053405	60425	160511_QHF_FH_JSI12i_3	41.482	38.429			1.2002	1.16	18.591	6	3	Median	1.2191	1.0527	NaN	1	1	Median	1.1482	1.3782	26.277	2	2	Median	1.1231	1.0882	10.947	2	0	Median	1.3693	1.3743	NaN	1	0	Median	282180000	144390000	137790000	37176000	17458000	19719000	73103000	38979000	34124000	115180000	56704000	58473000	56723000	31247000	25475000	4563	4422	4296	28061;28062;28063;28064;28065;28066	38379;38380;38381;38382;38383;38384;38385	38385			7	
AQPPEAGPQGLHDLGR	0	Unmodified	1641.8223	0.82231699	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.72	2	7	2					2		2	3	5	3	39.012	36.566	2;3	3.0702E-05	31078	160511_QHF_FH_JSI12i_2	82.482	76.578			1.0728	1.1658	17.38	11	3	Median	1.4948	1.2835	13.603	2	1	Median	0.96247	1.1653	17.706	2	0	Median	1.2857	1.2876	21.686	5	2	Median	0.98915	1.0471	0.065935	2	0	Median	1046600000	499320000	547290000	160510000	72302000	88210000	243210000	114070000	129140000	343970000	156270000	187700000	298920000	156680000	142240000	4564	6	4297	28067;28068;28069;28070;28071;28072;28073;28074;28075;28076;28077;28078;28079	38386;38387;38388;38389;38390;38391;38392;38393;38394;38395;38396;38397;38398;38399	38387			14	
AQPPSSAASR	0	Unmodified	970.48321	0.48320752	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.7958	3.4929	2	7.1377E-05	4044	160511_QHF_FH_JSI10i_1	88.948	58.763			0.93223	1.0293	10.591	7	0	Median	1.3346	1.0969	NaN	1	0	Median	0.92182	1.0845	7.3857	2	0	Median	0.99118	0.9706	19.657	2	0	Median	0.90086	0.97163	2.7715	2	0	Median	1043700000	508650000	535090000	219790000	92508000	127280000	237670000	131850000	105820000	290030000	122320000	167710000	296250000	161980000	134270000	4565	2217	4298	28080;28081;28082;28083;28084;28085;28086	38400;38401;38402;38403;38404;38405;38406;38407;38408;38409	38406			10	
AQPSASLGVGYR	0	Unmodified	1204.62	0.62003536	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.33	2	4	1				3	3		1	5	4	3	38.54	33.46	2	1.6598E-07	29344	160511_QHF_FH_JSI9i_2	134.25	76.657			0.87483	0.9965	17.097	13	0	Median	1.261	1.0889	NaN	1	0	Median	0.79295	0.92615	18.232	5	0	Median	1.0292	1.0232	22.437	4	0	Median	0.87483	0.98742	2.2187	3	0	Plateau	1124800000	577150000	547670000	188520000	83880000	104640000	328430000	193510000	134920000	447450000	220290000	227150000	160420000	79469000	80954000	4566	4197	4299	28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099	38410;38411;38412;38413;38414;38415;38416;38417;38418;38419;38420;38421;38422;38423;38424;38425	38418			16	
AQPSDNAPAK	1	Unmodified	997.48287	0.48287317	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	2	3	3	7.0121	2.3409	2	2.0682E-08	4038	160511_QHF_FH_JSI12i_1	126.41	99.81			0.8605	0.92872	12.816	8	0	Median	1.1454	0.93616	NaN	1	0	Median	0.80259	0.94451	3.5124	2	0	Median	0.81064	0.76663	18.699	2	0	Median	0.88837	0.97063	7.0137	3	0	Median	620210000	316700000	303520000	171800000	74720000	97079000	180700000	97563000	83141000	7956100	4037800	3918300	259760000	140380000	119380000	4567	146	4300	28100;28101;28102;28103;28104;28105;28106;28107;28108	38426;38427;38428;38429;38430;38431;38432;38433;38434;38435;38436;38437;38438;38439;38440;38441;38442	38429			17	
AQPSVSLGAAYR	0	Unmodified	1218.6357	0.63568542	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	5.38	4	1	2				1	1		2	1	3	3	42.604	39.618	2	0.00012197	33885	160511_QHF_FH_JSI12i_3	85.807	32.641			0.9136	0.90471	6.3499	8	3	Median	0.97031	0.81604	NaN	1	0	Median	0.77405	0.89777	NaN	1	0	Median	0.99925	0.94373	6.3972	3	1	Plateau	0.89274	0.96123	3.8992	3	2	Median	844970000	458560000	386420000	4581000	2413100	2167800	207690000	124770000	82915000	246520000	125590000	120930000	386180000	205780000	180400000	4568	4197	4301	28109;28110;28111;28112;28113;28114;28115;28116;28117	38443;38444;38445;38446;38447;38448;38449;38450;38451;38452;38453	38452			11	
AQPSVSLGAPYR	0	Unmodified	1244.6513	0.65133548	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	42.806	42.004	2	0.00033032	35882	160511_QHF_FH_JSI12i_3	72.275	52.488			0.43063	0.45379	218.74	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43063	0.45379	218.74	2	1	Median	430180000	123790000	306390000	0	0	0	0	0	0	0	0	0	430180000	123790000	306390000	4569	4197	4302	28118;28119	38454;38455	38455			2	
AQPTPSSSATQSKPTPVK	2	Unmodified	1810.9425	0.94249171	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.943	1		2								1	1	1	16.046	15.981	3	2.9837E-06	12829	160511_QHF_FH_JSI12i_3	101.67	91.71			0.98034	0.9174	33.885	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1807	1.3794	NaN	1	0	Median	0.98034	0.9174	NaN	1	0	Median	0.68555	0.70401	NaN	1	1	Median	189540000	95671000	93865000	0	0	0	57276000	28169000	29106000	66681000	29334000	37347000	65579000	38168000	27411000	4570	1971	4303	28120;28121;28122	38456;38457;38458	38458			3	
AQPTPSSSATQSKPTPVKPNYALK	3	Unmodified	2497.3177	0.31765233	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		34.005	32.937	3;4	3.5971E-06	26721	160511_QHF_FH_JSI9i_3	62.684	59.96			0.71223	0.67854	23.435	4	1	Median	0.73715	0.59179	NaN	1	0	Median	0.56242	0.64514	26.483	2	1	Median	0.94956	0.88576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	274380000	156800000	117590000	95882000	49671000	46211000	111370000	67004000	44370000	67126000	40121000	27005000	0	0	0	4571	1971	4304	28123;28124;28125;28126	38459;38460;38461;38462;38463;38464	38463			6	
AQPVQSKPQK	2	Unmodified	1109.6193	0.61930707	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	5.4423	5.366	2;3	6.9409E-05	3022	160511_QHF_FH_JSI12i_3	83	65.974			0.70131	0.75311	21.919	4	1	Median	NaN	NaN	NaN	0	0	Median	0.60076	0.6779	NaN	1	0	Median	0.58265	0.54878	NaN	1	0	Median	0.85029	0.8624	4.2838	2	1	Median	536450000	291450000	244990000	0	0	0	107230000	63172000	44062000	122950000	80985000	41963000	306270000	147300000	158970000	4572	4937	4305	28127;28128;28129;28130	38465;38466;38467;38468	38466			4	
AQPVQVAEGSEPDGFWEALGGK	1	Unmodified	2271.0808	0.080776102	848	P06396	GSN	Gelsolin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				64.808	63.887	3	0.059611	56125	160511_QHF_FH_JSI9i_2	13.592	4.5453		+	1.0651	0.96021	NaN	1	0	Median	1.0651	0.96021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46944000	26090000	20855000	46944000	26090000	20855000	0	0	0	0	0	0	0	0	0	4573	848	4306	28131	38469;38470	38469			2	
AQPWWTPK	1	Unmodified	1012.5131	0.51305109	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	51.387	50.433	2	0.00059223	44286	160511_QHF_FH_JSI11i_3	98.299	53.218			0.98552	1.0285	8.9799	6	1	Median	1.2579	1.007	NaN	1	0	Median	0.97679	1.1714	8.4343	2	0	Median	1.0217	0.98974	NaN	1	1	Median	0.94845	1.0157	4.7582	2	0	Median	2449000000	1271000000	1178100000	150720000	59101000	91616000	440330000	238290000	202040000	605740000	338100000	267640000	1252200000	635490000	616750000	4574	2307	4307	28132;28133;28134;28135;28136;28137;28138	38471;38472;38473;38474;38475;38476;38477;38478	38472			8	
AQPYDPNFYDETYDYGGFTMMFDDRR	0	Unmodified	3213.3121	0.31205096	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9	7		1							1		1	1		95.178	92.255	3	1.0179E-23	47392	160513_QHF_FH_JSI10Kac_6	132.26	111.81			1.0772	1.1828	7.0241	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94551	1.1255	NaN	1	0	Median	1.2272	1.243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	189160000	104690000	84469000	0	0	0	77786000	39825000	37961000	111380000	64867000	46509000	0	0	0	4575	1975	4308	28139;28140	38479;38480;38481	38480			3	
AQQAADK	1	Acetyl (Protein N-term)	772.37153	0.37153181	1436	P35579	MYH9	Myosin-9	yes	yes	0	1	0	0			By MS/MS	By MS/MS	11	0				2								1	1	6.9331	-0.58531	2	0.0023512	1979	160513_QHF_FH_JSI11Kac_1	72.138	55.985			0.87995	0.89447	2.447	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93498	0.91008	NaN	1	0	Median	0.82815	0.87913	NaN	1	0	Median	25696000	14370000	11326000	0	0	0	0	0	0	17289000	9374600	7914600	8407200	4995500	3411700	4576	1436	4309	28141;28142	38482;38483;38484	38484			3	
AQQAADKYLYVDK	2	Acetyl (K);Acetyl (Protein N-term)	1595.7831	0.78313752	1436	P35579	MYH9	Myosin-9	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11.3	0.471				2	1						1		2	77.423	69.034	2	6.9595E-26	27187	160513_QHF_FH_JSI10Kac_1	90.653	80.7			0.84282	0.93685	57.342	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2236	1.4053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58054	0.62456	NaN	1	0	Median	15051000	8098900	6952500	0	0	0	9141700	4455000	4686700	0	0	0	5909700	3643900	2265900	4577	1436	4310	28143;28144;28145	38485;38486;38487;38488;38489	38488	1395		5	
AQQALSELHTVEK	1	Unmodified	1452.7573	0.75725712	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	33.352	32.716	2;3	2.9689E-12	28409	160511_QHF_FH_JSI11i_3	119.45	105.24			0.66524	0.74996	33.476	6	1	Median	0.47773	0.40266	NaN	1	1	Median	0.60101	0.73199	NaN	1	0	Median	0.78218	0.7458	22.955	2	0	Median	0.84394	0.91018	23.951	2	0	Median	609440000	313080000	296360000	67351000	39008000	28343000	126960000	73024000	53939000	215240000	104170000	111070000	199880000	96877000	103000000	4578	2947	4311	28146;28147;28148;28149;28150;28151;28152;28153;28154	38490;38491;38492;38493;38494;38495;38496;38497;38498;38499	38492			10	
AQQATPGGAAPTIFSR	0	Unmodified	1571.8056	0.80560429	4510	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	47.992	47.223	2	1.3663E-21	41723	160511_QHF_FH_JSI11i_3	172.76	117.77			1.111	1.149	16.504	11	0	Median	1.6377	1.3965	30.39	2	0	Median	0.92044	1.0852	12.355	3	0	Median	1.4228	1.149	13.091	3	0	Plateau	1.5312	1.1641	17.26	3	0	Plateau	1090300000	512790000	577470000	202360000	85835000	116530000	287970000	165230000	122740000	326770000	150820000	175950000	273160000	110910000	162250000	4579	4510	4312	28155;28156;28157;28158;28159;28160;28161;28162;28163;28164;28165;28166	38500;38501;38502;38503;38504;38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515	38501			15	
AQQDQLVLIFAGK	1	Unmodified	1429.7929	0.79291434	4964	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	6.09	4	3					1	2		2	2	3	3	83.987	80.429	2	4.9171E-07	75271	160511_QHF_FH_JSI10i_1	162.26	138.23			1.104	1.1863	37.304	10	2	Median	1.0846	0.90857	80.392	2	1	Median	0.83241	0.96178	35.123	2	0	Median	1.0763	1.011	20.296	3	0	Median	1.1323	1.1414	24.603	3	1	Plateau	171440000	79620000	91817000	35894000	14304000	21590000	42572000	23730000	18843000	46636000	20674000	25963000	46333000	20912000	25421000	4580	4964	4313	28167;28168;28169;28170;28171;28172;28173;28174;28175;28176	38516;38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528	38522			13	
AQQEAEAAQR	0	Unmodified	1100.521	0.52104959	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	5.3361	1.5433	2	9.8405E-10	2794	160511_QHF_FH_JSI12i_1	136.63	99.444			0.935	0.95188	21.691	8	0	Median	1.4802	1.2225	NaN	1	0	Median	0.75624	0.88876	12.754	2	0	Median	0.96083	0.93156	32.151	3	0	Median	0.9003	0.95361	6.6582	2	0	Median	1483600000	811600000	672030000	367510000	176840000	190670000	396500000	234880000	161610000	383300000	211790000	171500000	336320000	188090000	148240000	4581	4266	4314	28177;28178;28179;28180;28181;28182;28183;28184	38529;38530;38531;38532;38533;38534;38535;38536;38537;38538	38530			10	
AQQEDALAQQAFEEAR	0	Unmodified	1803.8388	0.83875492	2482	Q13951	CBFB	Core-binding factor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	55.424	54.765	2	2.4299E-15	49815	160511_QHF_FH_JSI12i_1	164.33	132.33			0.78443	0.80372	10.615	4	1	Median	1.0606	0.87223	NaN	1	0	Median	0.66121	0.74411	NaN	1	1	Median	0.88836	0.8681	NaN	1	0	Median	0.69266	0.70905	NaN	1	0	Median	136370000	77498000	58876000	33879000	14580000	19299000	32611000	21670000	10941000	40960000	23184000	17775000	28925000	18065000	10860000	4582	2482	4315	28185;28186;28187;28188;28189	38539;38540;38541;38542;38543;38544	38540			5	
AQQEFAAGVFSNPAVR	0	Unmodified	1690.8427	0.84271808	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	3.47	5	6	2					1		3	1	5	5	64.57	63.016	2;3	3.9733E-30	54052	160511_QHF_FH_JSI12i_2	191.06	166.77			1.0581	1.1225	13.492	12	4	Median	1.4953	1.2454	7.9422	3	1	Median	0.94563	1.1044	NaN	1	0	Median	1.0599	1.0265	17.364	5	2	Median	0.98188	1.0912	6.7562	3	1	Median	880190000	415470000	464730000	157340000	68657000	88679000	106630000	54891000	51738000	455110000	213220000	241880000	161120000	78697000	82426000	4583	210	4316	28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203	38545;38546;38547;38548;38549;38550;38551;38552;38553;38554;38555;38556;38557;38558;38559;38560;38561;38562;38563;38564	38549			18	
AQQEFATGVMSNK	1	Unmodified	1409.6609	0.66091389	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	35.442	34.838	2	3.7413E-10	31470	160511_QHF_FH_JSI12i_1	144.1	119.25			1.6242	1.4192	12.869	4	2	Linear	1.6917	1.4167	NaN	1	0	Median	0.91053	1.0508	NaN	1	1	Median	1.2552	1.2283	NaN	1	1	Median	1.2854	1.327	NaN	1	0	Median	321760000	127600000	194150000	78967000	27784000	51183000	84711000	36354000	48357000	84254000	34319000	49935000	73825000	29146000	44679000	4584	252	4317	28204;28205;28206;28207;28208	38565;38566;38567;38568;38569	38566			5	
AQQELEEQTR	0	Unmodified	1230.584	0.58404378	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.359	9.0244	2	7.272E-19	8057	160511_QHF_FH_JSI10i_1	173.32	148.4			0.97514	0.99437	2.0391	7	0	Median	1.2236	0.99437	NaN	1	0	Median	0.84344	0.99852	2.1363	2	0	Median	1.0148	0.99069	2.8888	2	0	Median	0.94021	0.99772	3.3575	2	0	Median	1813500000	927090000	886440000	427970000	199290000	228670000	507370000	277320000	230050000	416160000	208410000	207750000	462030000	242060000	219970000	4585	1270	4318	28209;28210;28211;28212;28213;28214;28215	38570;38571;38572;38573;38574;38575;38576;38577;38578;38579;38580;38581	38576			12	
AQQELEEQTRR	0	Unmodified	1386.6852	0.68515481	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.29	8	8	6				2	4		3	10	7	8	9.9109	7.4692	2;3	4.1195E-38	6415	160511_QHF_FH_JSI11i_2	207.29	174.97			1.0566	1.0649	13.653	25	2	Median	1.2492	1.0649	1.4232	3	0	Median	0.88936	1.0598	16.532	8	2	Median	1.0854	1.0652	5.8644	7	0	Median	0.98998	1.0604	17.983	7	0	Median	7072300000	3440400000	3631900000	1247900000	549550000	698350000	2199600000	1044800000	1154800000	2749100000	1364500000	1384700000	875670000	481590000	394080000	4586	1270	4319	28216;28217;28218;28219;28220;28221;28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240;28241;28242;28243	38582;38583;38584;38585;38586;38587;38588;38589;38590;38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602;38603;38604;38605;38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616;38617;38618;38619;38620;38621;38622;38623;38624;38625;38626;38627	38610			46	
AQQEQAAHQASLRK	1	Unmodified	1564.807	0.80700128	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			7.0238	6.487	3;4	5.924E-05	4393	160511_QHF_FH_JSI9i_3	66.246	60.342			1.6215	1.2695	22.69	4	0	Linear	1.4176	1.1551	19.158	2	0	Median	0.72847	0.8335	10.613	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147790000	61596000	86191000	100010000	37268000	62741000	47779000	24328000	23451000	0	0	0	0	0	0	4587	681	4320	28244;28245;28246;28247	38628;38629;38630;38631;38632	38632			5	
AQQEQELAADAFK	1	Unmodified	1447.6943	0.69432251	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.54	8				1	3				2	3	3	4	47.947	44.38	2;3	9.842E-53	39204	160511_QHF_FH_JSI9i_1	243.53	182.94			1.0267	1.0585	32.54	12	1	Median	0.77247	0.63286	52.149	2	1	Median	0.78497	0.93683	38.099	3	0	Median	1.1307	1.1202	14.515	3	0	Median	1.0126	1.0758	4.7057	4	0	Median	7854600000	4000200000	3854400000	1617800000	780740000	837060000	2053100000	1125700000	927400000	2418100000	1223300000	1194800000	1765600000	870440000	895120000	4588	1050	4321	28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259	38633;38634;38635;38636;38637;38638;38639;38640;38641;38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652;38653;38654;38655;38656;38657;38658;38659;38660	38652			27	
AQQGEVMR	0	Unmodified	917.4389	0.43889987	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	7.8783	6.0854	2	0.00041247	4763	160511_QHF_FH_JSI9i_1	120.46	76.062			1.0748	0.89885	78.244	5	1	Median	1.0748	0.89885	NaN	1	0	Median	0.72978	0.87197	NaN	1	0	Median	1.3226	1.309	84.238	2	1	Median	4.221	4.4003	NaN	1	0	Median	753510000	371930000	381580000	206970000	99377000	107590000	222750000	136280000	86475000	220360000	117690000	102670000	103440000	18596000	84843000	4589	4831	4322	28260;28261;28262;28263;28264	38661;38662;38663;38664;38665;38666	38666			6	
AQQGIVFLDEVDK	1	Unmodified	1460.7511	0.75110911	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				73.227	72.296	2	6.995E-05	64364	160511_QHF_FH_JSI9i_1	103.21	65.664			0.89477	0.7335	NaN	1	0	Median	0.89477	0.7335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106670000	50351000	56319000	106670000	50351000	56319000	0	0	0	0	0	0	0	0	0	4590	598	4323	28265	38667;38668	38668			2	
AQQHWGSGVGVK	1	Unmodified	1252.6313	0.63126874	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	2	2	18.726	18.15	2;3	6.4435E-23	14561	160511_QHF_FH_JSI12i_3	177.57	154.14			0.86253	0.85455	26.018	8	2	Median	0.91315	0.74782	15.815	2	1	Median	0.59849	0.67378	36.665	2	1	Median	1.1731	1.1004	20.071	2	0	Median	0.86253	0.85842	6.4487	2	0	Median	1078200000	518890000	559290000	136340000	81567000	54773000	128800000	69093000	59706000	375880000	123750000	252130000	437160000	244480000	192680000	4591	1638	4324	28266;28267;28268;28269;28270;28271;28272;28273;28274;28275	38669;38670;38671;38672;38673;38674;38675;38676;38677;38678;38679;38680	38680			11	
AQQIHSQTSQQYPLYDLDLGK	1	Unmodified	2432.1972	0.19720284	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	3.49	6	4	3					1		1	3	5	5	66.151	64.883	3	2.9216E-23	55839	160511_QHF_FH_JSI12i_2	167.53	159.22			0.90197	0.96624	13.408	13	6	Median	1.0496	0.89057	NaN	1	0	Median	0.77098	0.90276	9.3116	3	2	Median	0.9953	0.96624	13.695	5	2	Median	0.99562	1.0874	14.996	4	2	Median	2195700000	1160300000	1035400000	160990000	80315000	80671000	515110000	280670000	234430000	781340000	416950000	364390000	738240000	382320000	355920000	4592	1085	4325	28276;28277;28278;28279;28280;28281;28282;28283;28284;28285;28286;28287;28288;28289	38681;38682;38683;38684;38685;38686;38687;38688;38689;38690;38691;38692;38693;38694;38695;38696;38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710;38711;38712	38688			32	
AQQLAEVEVK	1	Unmodified	1113.603	0.60298831	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		31.46	30.92	2	2.6586E-09	27553	160511_QHF_FH_JSI11i_1	127.76	64.2			0.6119	0.58096	21.131	4	3	Median	0.67261	0.55082	NaN	1	1	Median	0.61027	0.72602	23.987	2	2	Median	0.55667	0.55052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	478040000	305090000	172950000	92110000	53517000	38593000	250250000	156440000	93811000	135680000	95132000	40549000	0	0	0	4593	2573	4326	28290;28291;28292;28293	38713;38714;38715;38716	38713			4	
AQQLREEQQR	0	Unmodified	1284.6535	0.65346075	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			5.7032	5.2564	2;3	0.002415	3207	160511_QHF_FH_JSI9i_2	77.192	45.77			0.92069	1.0638	10.436	3	0	Plateau	1.1641	0.97293	NaN	1	0	Median	0.80549	0.96672	14.75	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	189860000	96248000	93608000	62666000	29860000	32806000	127190000	66388000	60802000	0	0	0	0	0	0	4594	2636	4327	28294;28295;28296	38717;38718;38719	38718			3	
AQQLSITSK	1	Unmodified	974.53966	0.53965977	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	3	2	1	23.351	20.651	2	7.9941E-05	17671	160511_QHF_FH_JSI10i_1	95.502	43.714			1.1057	1.1854	18.891	7	0	Median	1.4361	1.1959	NaN	1	0	Median	1.1057	1.2952	14.877	3	0	Median	1.1375	1.1022	10.293	2	0	Median	0.80594	0.83016	NaN	1	0	Median	724710000	354820000	369890000	165160000	71072000	94089000	185860000	96914000	88941000	182100000	85414000	96687000	191590000	101420000	90172000	4595	3328	4328	28297;28298;28299;28300;28301;28302;28303	38720;38721;38722;38723;38724;38725;38726;38727;38728;38729	38726			10	
AQQLWYAIIESQTETGTPYMLYK	1	Unmodified	2733.336	0.33600451	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		1	1	2	98.59	94.803	2;3	1.9216E-217	51486	160513_QHF_FH_JSI10Kac_6	350.76	317.56			1.0456	1.1152	22.508	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89931	1.0536	NaN	1	1	Median	0.98238	0.93914	NaN	1	0	Median	1.3167	1.3684	20.897	2	0	Median	962080000	407670000	554410000	0	0	0	68938000	28087000	40851000	296620000	136080000	160540000	596530000	243510000	353020000	4596	1242	4329	28304;28305;28306;28307	38730;38731;38732;38733;38734	38734			5	
AQQLWYAIIESQTETGTPYMLYK	1	Oxidation (M)	2749.3309	0.33091913	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.21	84.859	3	1.3483E-22	47439	160513_QHF_FH_JSI9Kac_6	140.73	130.33			1.0696	1.0384	11.39	4	2	Median	1.2479	1.0663	NaN	1	0	Median	0.75982	0.88699	NaN	1	0	Median	1.0451	1.0112	NaN	1	1	Median	1.0946	1.1645	NaN	1	1	Median	465580000	182770000	282800000	120430000	49631000	70800000	105850000	64666000	41183000	67508000	17152000	50356000	171790000	51324000	120470000	4597	1242	4329	28308;28309;28310;28311	38735;38736;38737;38738	38736		873	4	
AQQNNVEHKVETFSGVYK	2	Acetyl (K)	2119.0334	0.033431978	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.338	62.607	3	8.6179E-08	33457	160513_QHF_FH_JSI11Kac_5	106.44	84.634			0.30215	0.29766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30215	0.29766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35709000	27252000	8456900	0	0	0	0	0	0	35709000	27252000	8456900	0	0	0	4598	1979	4330	28312	38739;38740	38740	1997;1998		2	
AQQPAAELMQDTR	0	Unmodified	1457.6933	0.69327665	2322	Q12899	TRIM26	Tripartite motif-containing protein 26	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				40.824	39.611	2	0.0048219	35057	160511_QHF_FH_JSI9i_1	54.259	37.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4599	2322	4331	28313	38741	38741			1	
AQQQAEAER	0	Unmodified	1029.4839	0.4839358	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	3.8831	3.6579	2	0.00014605	1653	160511_QHF_FH_JSI11i_1	89.698	26.981			1.3977	1.4863	18.191	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.89794	1.039	NaN	1	1	Median	1.2703	1.2208	NaN	1	0	Median	1.3977	1.4939	NaN	1	0	Median	112500000	50706000	61789000	0	0	0	38566000	20027000	18538000	29518000	12428000	17090000	44412000	18251000	26161000	4600	2636	4332	28314;28315;28316	38742;38743;38744;38745;38746	38743			5	
AQQQDKPPR	1	Unmodified	1066.552	0.55195579	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.5605	4.6529	2	0.011284	2142	160511_QHF_FH_JSI12i_3	87.639	59.465			0.65727	0.68433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65727	0.68433	NaN	1	1	Median	17626000	9312400	8313500	0	0	0	0	0	0	0	0	0	17626000	9312400	8313500	4601	1628	4333	28317	38747	38747			1	
AQQQEEQGSVNDVKEEEK	2	Unmodified	2073.9451	0.94507048	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	15.479	15.063	3	1.2378E-24	12403	160511_QHF_FH_JSI11i_1	183.22	165.63			0.89873	0.92374	17.101	5	3	Median	1.1364	0.92374	NaN	1	0	Median	0.75662	0.90101	24.912	2	2	Median	1.1965	1.1541	NaN	1	0	Median	0.80094	0.8552	NaN	1	1	Median	411650000	205240000	206400000	69371000	38088000	31283000	140510000	77627000	62880000	108880000	41121000	67760000	92886000	48407000	44479000	4602	5639	4334	28318;28319;28320;28321;28322	38748;38749;38750;38751;38752;38753;38754	38749			7	
AQQQLEQEFNQK	1	Unmodified	1489.7161	0.71612058	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.051	31.479	2	8.6181E-06	28010	160511_QHF_FH_JSI11i_1	97.456	77.169			1.1913	1.1958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1913	1.1958	NaN	1	1	Median	17221000	5769000	11452000	0	0	0	0	0	0	0	0	0	17221000	5769000	11452000	4603	2648	4335	28323;28324;28325	38755;38756;38757	38755			3	
AQQQLNSK	1	Unmodified	915.47739	0.47739386	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					2	1	2	5.1582	0.68274	2	0.0029171	2637	160511_QHF_FH_JSI12i_1	76.478	41.67			1.1396	1.2122	18.028	5	0	Median	NaN	NaN	NaN	0	0	Median	0.98189	1.1337	28.147	2	0	Median	0.99558	0.9753	NaN	1	0	Median	1.1801	1.2682	6.3901	2	0	Median	504850000	251470000	253380000	0	0	0	244360000	123710000	120640000	5045300	2485700	2559600	255450000	125280000	130170000	4604	4673	4336	28326;28327;28328;28329;28330	38758;38759;38760;38761;38762;38763	38758			6	
AQQSLELIQSK	1	Unmodified	1243.6772	0.67721588	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.01	4	1				4	1			1	4	3	2	45.767	40.629	2	6.1346E-06	35468	160511_QHF_FH_JSI9i_1	110.39	82.645			0.92117	1.0227	32.37	10	5	Median	1.285	1.0567	NaN	1	0	Median	0.63667	0.75352	45.965	4	2	Median	1.064	1.028	7.2342	3	2	Median	0.8506	0.91451	9.8634	2	1	Median	865900000	428640000	437260000	169780000	58978000	110810000	252990000	133580000	119410000	229440000	112170000	117280000	213680000	123920000	89764000	4605	3328	4337	28331;28332;28333;28334;28335;28336;28337;28338;28339;28340	38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775	38771			12	
AQQVAVQEQEIAR	0	Unmodified	1468.7634	0.76340513	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	29.87	29.213	2	7.2783E-07	25483	160511_QHF_FH_JSI9i_1	131.37	87.059			1.0581	0.96528	78.735	4	1	Median	1.1082	0.90216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7004	1.6401	NaN	1	0	Median	0.5041	0.51801	97.588	2	1	Median	235620000	108730000	126890000	48289000	23065000	25224000	0	0	0	80111000	28087000	52023000	107220000	57579000	49645000	4606	590	4338	28341;28342;28343;28344	38776;38777;38778;38779;38780	38780			5	
AQQVSQGLDVLTAK	1	Unmodified	1456.7886	0.78855725	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.6	5	1	1			4				3	4	2	2	58.065	54.322	2;3	3.7539E-10	47870	160511_QHF_FH_JSI9i_1	176.51	155.64			1.0033	1.0463	18.255	8	1	Median	1.2602	1.0386	NaN	1	0	Median	0.8905	1.0423	27.545	4	1	Median	1.0536	1.0226	6.1902	2	0	Median	0.99351	1.054	NaN	1	0	Median	2925100000	1570500000	1354600000	478210000	193510000	284690000	806650000	466110000	340540000	915240000	514920000	400320000	724970000	395910000	329060000	4607	1139	4339	28345;28346;28347;28348;28349;28350;28351;28352;28353;28354;28355	38781;38782;38783;38784;38785;38786;38787;38788;38789;38790;38791;38792;38793;38794;38795;38796;38797;38798	38791			18	
AQSAGTVR	0	Unmodified	788.41407	0.41406533	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								4	3	2	2	1.9447	1.609	2	0.0017591	925	160511_QHF_FH_JSI12i_1	85.212	30.687			1.1257	1.0603	23.252	11	1	Median	1.2533	0.9447	10.875	4	0	Linear	0.96536	1.1222	14.497	3	1	Median	1.1507	1.1315	41.747	2	0	Median	1.1571	1.2126	50.944	2	0	Median	863300000	406370000	456930000	79915000	37764000	42151000	268100000	137910000	130200000	232150000	97407000	134740000	283130000	133290000	149840000	4608	1181	4340	28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366	38799;38800;38801;38802;38803;38804;38805;38806;38807;38808;38809	38801			11	
AQSDGIWGEHEIDYILLVR	0	Unmodified	2213.1117	0.1116823	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.3	6.6		1							2	1	1	1		93.364	88.526	3	1.6176E-157	47288	160513_QHF_FH_JSI10Kac_6	279.58	271.11			0.822	0.97953	10.854	3	1	Plateau	1.3837	1.1899	NaN	1	0	Median	0.822	0.97953	NaN	1	0	Median	1.0017	0.99324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	539020000	301400000	237620000	117880000	45263000	72614000	209650000	124360000	85291000	211500000	131780000	79714000	0	0	0	4609	2480	4341	28367;28368;28369	38810;38811;38812	38812			3	
AQSELAAHQK	1	Unmodified	1081.5516	0.55162144	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								2		1		5.7539	5.4119	2;3	0.00030699	3343	160511_QHF_FH_JSI11i_2	56.404	50.369			1.1694	1.0908	39.468	3	1	Plateau	1.8164	1.578	9.0471	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79706	0.80382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220910000	102320000	118590000	111720000	41135000	70585000	0	0	0	109190000	61186000	48006000	0	0	0	4610	1264	4342	28370;28371;28372	38813;38814;38815	38815			3	
AQSGPVR	0	Unmodified	713.38204	0.38203692	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	2	2	3	3.9215	3.5516	2	0.0051155	1788	160511_QHF_FH_JSI10i_1	96.048	49.384			1.2717	1.2618	17.129	9	1	Median	1.54	1.2628	22.253	3	0	Median	0.87579	1.0306	15.436	2	0	Median	1.1685	1.1572	12.235	2	0	Median	1.282	1.3827	6.0175	2	1	Median	1117500000	568060000	549420000	221510000	92288000	129220000	369620000	200870000	168750000	276270000	136570000	139690000	250090000	138330000	111760000	4611	2169	4343	28373;28374;28375;28376;28377;28378;28379;28380;28381;28382	38816;38817;38818;38819;38820;38821;38822;38823;38824;38825;38826;38827;38828;38829	38822			14	
AQSGSDSSPEPK	1	Unmodified	1188.5259	0.5258602	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	5.83	2.5503	2	1.3792E-41	3186	160511_QHF_FH_JSI11i_1	201.6	185.72			0.79979	0.84181	12.759	7	0	Median	1.0913	0.8909	NaN	1	0	Median	0.76538	0.88512	7.0951	2	0	Median	0.83743	0.81994	3.7938	2	0	Median	0.64466	0.67472	0.083373	2	0	Median	1122800000	647400000	475440000	223300000	104410000	118890000	322040000	198770000	123260000	278700000	135720000	142980000	298810000	208500000	90305000	4612	5474	4344	28383;28384;28385;28386;28387;28388;28389	38830;38831;38832;38833;38834;38835;38836;38837;38838;38839;38840;38841;38842;38843	38830			14	
AQSINITELNLPQLEMLK	1	Acetyl (Protein N-term)	2096.1187	0.11874151	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	102.44	102.34	2;3	2.4086E-53	93160	160511_QHF_FH_JSI10i_1	162.93	124.48			1.0893	1.1204	13.22	7	0	Median	1.0893	0.93949	NaN	1	0	Median	0.93833	1.1097	1.358	2	0	Median	1.0578	1.0442	24.401	2	0	Median	1.1575	1.1987	2.5907	2	0	Median	844590000	377170000	467420000	79788000	16694000	63094000	267750000	128380000	139370000	230880000	110380000	120500000	266170000	121720000	144460000	4613	4274	4345	28390;28391;28392;28393;28394;28395;28396;28397	38844;38845;38846;38847;38848;38849	38848			6	
AQSLAEQTSDTAGLESSTR	0	Unmodified	1950.913	0.91304207	2337	Q12986	NFX1	Transcriptional repressor NF-X1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	37.783	37.05	2	4.505E-42	33108	160511_QHF_FH_JSI10i_1	200.44	169.89			0.77992	0.77266	18.39	5	1	Median	0.85839	0.69632	14.712	2	0	Median	0.76503	0.8716	NaN	1	0	Median	0.76858	0.73842	NaN	1	1	Median	0.96051	1.0251	NaN	1	0	Median	96954000	54738000	42216000	27819000	12670000	15149000	25854000	15509000	10344000	20156000	12875000	7281400	23125000	13684000	9441000	4614	2337	4346	28398;28399;28400;28401;28402	38850;38851;38852;38853;38854	38853			5	
AQSLLQLWK	1	Unmodified	1085.6233	0.62332982	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.85	76.451	2	0.0076058	64199	160511_QHF_FH_JSI10i_3	61.999	52.411			0.8414	0.97854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8414	0.97854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10425000	6501500	3924000	0	0	0	10425000	6501500	3924000	0	0	0	0	0	0	4615	3811	4347	28403	38855	38855			1	
AQSLLSTDREASIDILHSIVK	1	Unmodified	2295.2434	0.24342475	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							5	5	2	1	89.65	88.85	3;4	1.2279E-22	74117	160511_QHF_FH_JSI10i_3	161.8	142.77			0.92064	0.907	16.778	13	3	Median	1.1002	0.91614	11.758	5	2	Median	0.76135	0.8533	18.551	5	1	Median	0.99902	0.95452	13.69	2	0	Median	0.88809	0.87438	NaN	1	0	Median	770550000	401660000	368890000	284090000	131980000	152110000	272870000	160720000	112140000	186030000	96782000	89250000	27566000	12179000	15387000	4616	109	4348	28404;28405;28406;28407;28408;28409;28410;28411;28412;28413;28414;28415;28416	38856;38857;38858;38859;38860;38861;38862;38863;38864;38865;38866;38867;38868;38869;38870;38871;38872;38873;38874;38875	38863			20	
AQSLVISPPAPSPR	0	Unmodified	1418.7882	0.78816332	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS		4.25	5.63	3						1			2		2		52.608	52.197	2	0.00045826	47177	160511_QHF_FH_JSI11i_1	71.806	53.026			1.2511	1.1719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2511	1.1719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67156000	35221000	31935000	0	0	0	0	0	0	67156000	35221000	31935000	0	0	0	4617	1576	4349	28417;28418;28419;28420	38876;38877;38878;38879	38876			4	
AQSNPYYNGPHLNLK	1	Unmodified	1714.8427	0.84271808	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	55.524	46.17	2;3	5.1489E-53	25286	160513_QHF_FH_JSI10Kac_6	167.32	148.96			0.85175	0.91345	8.2284	7	2	Median	1.1415	0.97158	NaN	1	0	Median	0.70843	0.8402	11.82	2	1	Median	0.9153	0.87665	7.359	2	0	Median	0.85466	0.90875	7.4992	2	1	Median	594510000	325240000	269280000	122520000	64459000	58057000	168410000	100440000	67971000	179170000	96291000	82879000	124420000	64044000	60371000	4618	3799	4350	28421;28422;28423;28424;28425;28426;28427	38880;38881;38882;38883;38884;38885;38886;38887	38886			8	
AQSQLLVPEQK	1	Unmodified	1239.6823	0.68230126	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.317	33.714	2	0.00012811	30575	160511_QHF_FH_JSI12i_1	96.113	78.893			1.1571	1.2676	23.494	4	1	Median	2.2102	1.8888	NaN	1	0	Median	1.0697	1.2718	NaN	1	0	Median	1.1224	1.0924	NaN	1	0	Median	1.1929	1.2635	NaN	1	1	Median	193710000	88270000	105440000	37513000	17122000	20391000	59838000	29509000	30329000	58734000	27640000	31093000	37622000	13999000	23623000	4619	2179	4351	28428;28429;28430;28431	38888;38889;38890;38891	38889			4	
AQSQTDRVDLGTLR	0	Unmodified	1558.8063	0.80633258	788;967;1352	P10316;P01891;P30453;P30457	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.87		7	4					5		3	4	6	3	37.368	33.719	2;3	9.168E-05	28382	160511_QHF_FH_JSI12i_3	84.566	68.624			1.0781	1.0931	7.7216	16	3	Median	1.3295	1.1275	3.6453	3	1	Median	0.85424	1.0344	6.1053	4	0	Median	1.1034	1.0992	8.0545	6	2	Median	0.99942	1.1312	10.971	3	0	Median	2283000000	1113900000	1169200000	492370000	206800000	285570000	645970000	351390000	294580000	832850000	390150000	442700000	311830000	165520000	146320000	4620	967;788;1352	4352	28432;28433;28434;28435;28436;28437;28438;28439;28440;28441;28442;28443;28444;28445;28446;28447	38892;38893;38894;38895;38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911	38911			20	
AQSSQDAVSSMNLFDLGGQYLR	0	Unmodified	2386.1223	0.12232334	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	8									2	2	2	2	101.02	100.9	2;3	0	91589	160511_QHF_FH_JSI10i_1	537.08	521.65			0.84833	1.0358	5.2529	8	0	Linear	1.3761	1.1206	2.6506	2	0	Median	0.8591	1.0182	3.5668	2	0	Median	1.0567	1.0413	7.1062	2	0	Median	0.97671	1.02	1.0299	2	0	Median	963830000	495880000	467950000	136440000	63456000	72981000	311830000	167800000	144020000	203270000	102330000	100930000	312300000	162290000	150010000	4621	5315	4353	28448;28449;28450;28451;28452;28453;28454;28455	38912;38913;38914;38915;38916;38917	38914			6	
AQSVSQINHK	1	Unmodified	1110.5782	0.57817054	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.36		2	4					2		1	1	3	3	7.4437	5.0049	2;3	1.3897E-11	4371	160511_QHF_FH_JSI12i_3	126.71	104.95			1.013	1.044	17.016	8	1	Median	1.4506	1.2869	NaN	1	1	Median	0.69896	0.86429	NaN	1	0	Median	1.0979	1.0292	20.464	3	0	Median	1.0306	1.059	13.255	3	0	Plateau	668710000	353330000	315380000	15788000	6299700	9487900	81261000	47450000	33811000	225160000	108990000	116170000	346500000	190590000	155910000	4622	4870	4354	28456;28457;28458;28459;28460;28461;28462;28463	38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928	38926			11	
AQSYEYVYR	0	Unmodified	1177.5404	0.54038805	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	30.426	29.584	2	0.011991	26611	160511_QHF_FH_JSI10i_1	48.157	33.491			1.0584	1.1002	9.699	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1868	1.1783	NaN	1	0	Median	0.94393	1.0273	NaN	1	0	Median	67751000	30926000	36826000	0	0	0	0	0	0	42688000	18321000	24366000	25064000	12604000	12459000	4623	3335	4355	28464;28465;28466	38929;38930	38930			2	
AQTAHIVLEDGTK	1	Unmodified	1381.7201	0.72014333	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.26	4	9	8				6	8	2	7	12	10	8	30.425	25.736	2;3	6.368E-22	21455	160511_QHF_FH_JSI11i_2	174.73	156.91			0.94275	0.99936	16.69	35	5	Median	1.3352	1.1129	16.64	7	1	Median	0.77666	0.91485	8.9996	11	1	Median	0.95998	0.98258	18.444	9	2	Median	1.0471	1.1777	15.561	8	1	Median	6489900000	3224800000	3265100000	1090200000	476240000	613980000	1300600000	697740000	602870000	2288900000	1196300000	1092600000	1810200000	854500000	955680000	4624	1372	4356	28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494;28495;28496;28497;28498;28499;28500;28501;28502;28503	38931;38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958;38959;38960;38961;38962;38963;38964;38965;38966;38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992;38993;38994;38995	38965			64	
AQTAPNK	1	Unmodified	728.3817	0.38170256	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	9										4	1	4	0.24472	-0.022603	2	0.0056478	163	160511_QHF_FH_JSI10i_1	98.418	43.893			0.67711	0.78368	64.93	9	4	Median	NaN	NaN	NaN	0	0	Median	0.77455	0.91672	49.097	4	3	Median	0.22522	0.21047	NaN	1	0	Median	0.74687	0.76856	60.629	4	1	Median	1215000000	682020000	532940000	0	0	0	637700000	344370000	293330000	49889000	36498000	13391000	527370000	301150000	226220000	4625	1664	4357	28504;28505;28506;28507;28508;28509;28510;28511;28512	38996;38997;38998;38999;39000;39001;39002;39003;39004;39005	39004			10	
AQTEGINISEEALNHLGEIGTK	1	Unmodified	2323.1656	0.16556836	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.662	2	7	4							3	4	2	4	81.245	80.575	2;3	6.57E-105	71145	160511_QHF_FH_JSI9i_2	267.57	248.02			0.94455	0.93476	17.528	11	4	Median	1.0121	0.84087	16.238	2	0	Median	0.72491	0.88066	19.579	4	4	Median	0.94643	0.94339	7.2616	2	0	Median	0.97287	1.0838	9.6184	3	0	Median	3736300000	1913100000	1823200000	797650000	397140000	400510000	888240000	512350000	375900000	965590000	490670000	474920000	1084800000	512970000	571830000	4626	5496	4358	28513;28514;28515;28516;28517;28518;28519;28520;28521;28522;28523;28524;28525	39006;39007;39008;39009;39010;39011;39012;39013;39014;39015;39016;39017;39018;39019;39020;39021;39022;39023;39024;39025	39018			20	
AQTEVQLQQK	1	Unmodified	1171.6197	0.619701	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.372	16.89	2	3.2753E-10	14239	160511_QHF_FH_JSI11i_1	140.11	104.82			0.82485	0.81945	8.0366	4	0	Median	1.0413	0.8691	NaN	1	0	Median	0.62376	0.74752	NaN	1	0	Median	0.79356	0.77264	NaN	1	0	Median	0.85738	0.87431	NaN	1	0	Median	264500000	153590000	110910000	63420000	32897000	30523000	64422000	39931000	24492000	52576000	29910000	22666000	84085000	50855000	33229000	4627	2574	4359	28526;28527;28528;28529	39026;39027;39028;39029;39030;39031;39032;39033	39027			8	
AQTEWNTGTWR	0	Unmodified	1348.616	0.61601261	3933	Q969E2	SCAMP4	Secretory carrier-associated membrane protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	41.44	41.03	2	6.1453E-06	34980	160511_QHF_FH_JSI12i_3	112.13	93.031			1.0677	1.1178	12.269	4	0	Median	NaN	NaN	NaN	0	0	Median	0.99467	1.2151	NaN	1	0	Median	1.1579	1.1178	5.9858	2	0	Median	0.92518	0.92058	NaN	1	0	Median	221170000	107670000	113500000	0	0	0	39123000	19742000	19380000	104780000	52735000	52044000	77272000	35194000	42078000	4628	3933	4360	28530;28531;28532;28533	39034;39035;39036	39035			3	
AQTLPTSVVTITSESSPGKR	1	Unmodified	2058.0957	0.095697884	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		56.793	55.761	3	6.5982E-12	46657	160511_QHF_FH_JSI10i_3	137.89	123.19			0.76458	0.86527	6.944	3	0	Plateau	1.049	0.84953	NaN	1	0	Median	0.74849	0.86527	NaN	1	0	Median	1.0156	0.96592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133160000	75377000	57781000	25559000	12998000	12562000	70643000	43282000	27361000	36956000	19098000	17858000	0	0	0	4629	2162	4361	28534;28535;28536	39037	39037			1	
AQTMSNSGIK	1	Unmodified	1035.5019	0.50189405	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	3.47	5	4	2				1			3	2	2	5	11.06	9.9049	2	8.9746E-07	8082	160511_QHF_FH_JSI12i_1	124.23	99.308			0.96261	0.93009	21.449	10	4	Median	1.4724	1.2334	25.855	3	1	Median	0.74213	0.8969	5.3305	2	0	Median	0.81089	0.78807	23.241	2	0	Median	0.97226	1.0186	16.191	3	3	Median	1864500000	1059800000	804650000	568800000	327310000	241490000	480000000	263780000	216230000	305960000	185770000	120190000	509690000	282950000	226740000	4630	2323	4362	28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547;28548	39038;39039;39040;39041;39042;39043;39044;39045;39046;39047;39048;39049;39050;39051;39052;39053	39042			16	
AQTMSNSGIK	1	Oxidation (M)	1051.4968	0.49680868	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3					2	3	3	6.931	4.0558	2	0.0017675	2096	160513_QHF_FH_JSI12Kac_3	75.378	54.823			0.86851	0.8945	18.265	8	2	Median	NaN	NaN	NaN	0	0	Median	0.78672	0.91674	24.843	2	0	Median	0.96109	0.94977	6.2	3	2	Median	0.72916	0.76325	20.115	3	0	Median	645020000	341710000	303320000	0	0	0	154610000	65457000	89149000	236720000	124940000	111790000	253700000	151310000	102380000	4631	2323	4362	28549;28550;28551;28552;28553;28554;28555;28556	39054;39055;39056;39057;39058;39059;39060;39061;39062;39063	39060		1912	10	
AQTPAFDKPK	2	Acetyl (Protein N-term)	1143.5924	0.59242362	777	P00813	ADA	Adenosine deaminase	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	29.512	28.827	2	0.0015771	25584	160511_QHF_FH_JSI11i_1	63.283	41.82			1.262	1.2392	65.188	3	3	Median	0.68578	0.56486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.262	1.2392	NaN	1	1	Median	2.0156	2.06	NaN	1	1	Median	179180000	111130000	68050000	80353000	57029000	23325000	0	0	0	41719000	16848000	24872000	57109000	37256000	19853000	4632	777	4363	28557;28558;28559	39064;39065;39066	39064			3	
AQTPAFDKPK	2	Acetyl (K);Acetyl (Protein N-term)	1185.603	0.60298831	777	P00813	ADA	Adenosine deaminase	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		57.826	48.358	2	0.019183	19078	160513_QHF_FH_JSI11Kac_1	42.743	37.778			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4633	777	4363	28560	39067	39067	403		1	
AQTPPGPSLSGSK	1	Unmodified	1225.6303	0.63026569	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.304	22.677	2	0.00011339	19658	160511_QHF_FH_JSI11i_1	90.05	70.779			0.68477	0.64065	5.0018	3	0	Median	0.76699	0.64065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68477	0.64908	NaN	1	0	Median	0.57815	0.59178	NaN	1	0	Median	250540000	146550000	103990000	96388000	52349000	44038000	0	0	0	65791000	40212000	25580000	88363000	53992000	34371000	4634	5474	4364	28561;28562;28563;28564	39068;39069;39070;39071	39068			4	
AQTSLESQFTDRYPDNLK	1	Unmodified	2112.0124	0.012362185	5175	Q9P031	CCDC59	Thyroid transcription factor 1-associated protein 26	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	56.922	56.545	3	0.00027229	48629	160511_QHF_FH_JSI12i_3	70.335	60.139			0.65525	0.66409	76.344	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1019	1.1394	NaN	1	1	Median	0.38965	0.38706	NaN	1	1	Median	78156000	38131000	40025000	0	0	0	0	0	0	35161000	13670000	21491000	42995000	24461000	18534000	4635	5175	4365	28565;28566	39072;39073	39073			2	
AQTYELQESNVQLK	1	Unmodified	1649.8261	0.82606496	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	2	2	3	48.795	47.122	2;3	1.7771E-65	42422	160511_QHF_FH_JSI11i_1	265.75	244.96			1.0201	1.0374	6.9884	8	0	Median	1.1614	0.96019	NaN	1	0	Median	0.87021	1.0127	10.383	2	0	Median	1.0497	1.0324	1.4252	2	0	Median	1.0038	1.0825	6.2849	3	0	Median	1105200000	573070000	532140000	167860000	80553000	87310000	337940000	182500000	155440000	364460000	184560000	179900000	234940000	125460000	109490000	4636	5192	4366	28567;28568;28569;28570;28571;28572;28573;28574	39074;39075;39076;39077;39078;39079;39080;39081;39082;39083;39084	39076			10	
AQVADVVVSR	0	Unmodified	1042.5771	0.57710791	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	31.854	31.092	2	1.8571E-09	27749	160511_QHF_FH_JSI10i_1	132.01	70.048			0.8767	0.973	13.723	8	0	Median	1.3374	1.1097	11.586	2	0	Median	0.87607	1.0538	2.2614	2	0	Median	0.84744	0.85073	6.6666	2	0	Median	0.80679	0.87286	8.3571	2	0	Median	6409100000	2964400000	3444700000	1331100000	557590000	773540000	1790700000	837270000	953390000	1628200000	782450000	845800000	1659000000	787090000	871930000	4637	1650	4367	28575;28576;28577;28578;28579;28580;28581;28582	39085;39086;39087;39088;39089;39090;39091;39092;39093;39094;39095;39096;39097;39098;39099;39100;39101;39102	39092			18	
AQVAMSTLPVEDEESSESR	0	Acetyl (Protein N-term)	2105.9423	0.94229329	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	74.529	74.054	2;3	9.294E-15	67278	160511_QHF_FH_JSI12i_1	180.97	172.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4638	2087	4368	28583;28584;28585;28586;28587;28588	39103;39104;39105;39106;39107;39108;39109	39105			7	
AQVARPGGDTIFGK	1	Unmodified	1415.7521	0.75211216	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.26	6.03	2	8	9					4	4	6	8	8	5	39.646	36.204	2;3	9.036E-14	31806	160511_QHF_FH_JSI11i_3	158.31	131.19			1.0553	1.0417	19.985	27	6	Median	1.1156	0.9314	10.64	6	0	Median	0.8686	1.0283	14.034	8	2	Median	1.0612	1.061	20.604	8	3	Median	0.97078	1.0129	34.837	5	1	Median	16982000000	8254200000	8728000000	5729300000	2546900000	3182500000	7469300000	4022300000	3447100000	3327200000	1481000000	1846300000	456330000	204110000	252220000	4639	1683	4369	28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615	39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121;39122;39123;39124;39125;39126;39127;39128;39129;39130;39131;39132;39133;39134;39135;39136;39137;39138;39139;39140;39141;39142;39143;39144;39145;39146;39147;39148;39149;39150;39151;39152;39153;39154;39155;39156;39157;39158;39159;39160;39161;39162;39163;39164;39165;39166;39167;39168;39169	39117			60	
AQVEEFLAQHGSEYQSVK	1	Unmodified	2048.9803	0.98033378	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		8	4						2	3	3	5	3	55.546	54.976	2;3	1.3928E-41	47290	160511_QHF_FH_JSI12i_3	202.97	193.88			1.0768	1.0757	18.258	10	3	Median	1.0604	0.9019	NaN	1	0	Median	0.75501	0.92616	5.4503	2	1	Median	0.96289	1.0858	20.914	4	2	Linear	1.1536	1.1918	5.5823	3	0	Plateau	1891400000	962640000	928770000	211340000	91284000	120060000	367270000	206620000	160660000	664330000	317420000	346910000	648470000	347320000	301140000	4640	2194	4370	28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629	39170;39171;39172;39173;39174;39175;39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190	39189			21	
AQVEIVTDGEEPAEMIQVLGPK	1	Unmodified	2352.1883	0.18827764	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	96.821	96.583	2;3	5.5552E-23	87304	160511_QHF_FH_JSI10i_1	208.51	196.35			1.0172	0.93949	9.5186	8	0	Median	1.0737	0.86919	2.439	2	0	Median	0.77896	0.91787	2.6861	2	0	Median	1.0206	1.0001	8.232	2	0	Median	1.0263	1.0638	8.4513	2	0	Median	656810000	341680000	315130000	55816000	26216000	29599000	272800000	155670000	117130000	116730000	47174000	69553000	211460000	112620000	98841000	4641	1490	4371	28630;28631;28632;28633;28634;28635;28636;28637	39191;39192;39193;39194;39195;39196;39197;39198;39199;39200;39201;39202;39203;39204;39205;39206;39207;39208;39209;39210;39211;39212;39213;39214	39207			24	
AQVEIVTDGEEPAEMIQVLGPKPALK	2	Unmodified	2761.4572	0.45718228	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							1	3	3	4	94.888	94.737	3;4	5.6202E-36	85602	160511_QHF_FH_JSI10i_1	166.06	163.13			0.95205	1.023	12.323	11	4	Median	1.0938	0.9456	NaN	1	1	Median	0.85022	1.023	10.639	3	1	Median	0.88697	0.89556	11.683	3	1	Median	1.0282	1.0675	12.085	4	1	Median	640850000	312580000	328270000	27118000	8826700	18291000	124650000	60261000	64388000	124680000	60300000	64381000	364400000	183190000	181210000	4642	1490	4372	28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648	39215;39216;39217;39218;39219;39220;39221;39222;39223;39224;39225;39226;39227;39228;39229;39230;39231;39232;39233	39223			18	
AQVEQELTTLR	0	Unmodified	1286.683	0.68302954	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	2	2	47.032	46.278	2	1.3728E-07	41596	160511_QHF_FH_JSI10i_1	124.1	84.102			1.1485	1.0989	9.5892	6	3	Median	1.1985	0.98911	NaN	1	0	Median	0.88892	1.0413	NaN	1	0	Median	1.2189	1.2097	7.8697	2	2	Median	1.0522	1.1217	8.619	2	1	Median	768450000	345530000	422920000	112690000	51958000	60733000	250480000	112230000	138250000	268540000	121570000	146980000	136740000	59776000	76963000	4643	2636	4373	28649;28650;28651;28652;28653;28654	39234;39235;39236;39237;39238;39239;39240;39241;39242	39240			9	
AQVGDLEEALARR	0	Unmodified	1426.7528	0.75284044	3957	Q96A19	CCDC102A	Coiled-coil domain-containing protein 102A	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	27.173	26.624	3	0.052966	23821	160511_QHF_FH_JSI12i_1	19.394	5.9907			1.1008	1.1546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1008	1.1546	NaN	1	0	Median	121660000	61199000	60457000	0	0	0	0	0	0	0	0	0	121660000	61199000	60457000	4644	3957	4374	28655	39243	39243			1	
AQVHPSSVNR	0	Unmodified	1093.5629	0.56285483	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	3	1	1	6.2936	5.9147	2;3	5.2829E-05	3918	160511_QHF_FH_JSI10i_3	92.439	66.055			1.3969	1.3736	103.69	4	1	Median	1.936	1.607	NaN	1	0	Median	1.7476	2.0439	78.406	2	0	Median	0.32003	0.29607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	302980000	165810000	137170000	33238000	12752000	20486000	175600000	81048000	94556000	94141000	72013000	22128000	0	0	0	4645	3267	4375	28656;28657;28658;28659;28660;28661	39244;39245;39246;39247;39248;39249	39246			6	
AQVIYTR	0	Unmodified	849.47085	0.47085192	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.35	4	4	4			1	4	7	1	5	7	7	6	19.54	14.674	2	5.6712E-05	9644	160513_QHF_FH_JSI10Kac_4	125.25	101.28			0.93727	0.99754	16.908	25	2	Median	1.2735	1.0413	25.779	5	1	Median	0.771	0.92969	20.706	7	0	Median	1.0223	1.0037	7.8311	7	0	Median	0.91948	0.99531	11.597	6	1	Median	12558000000	6399600000	6158700000	2045000000	823460000	1221600000	3467100000	2000000000	1467100000	4071400000	2072300000	1999100000	2974800000	1503900000	1470900000	4646	2026	4376	28662;28663;28664;28665;28666;28667;28668;28669;28670;28671;28672;28673;28674;28675;28676;28677;28678;28679;28680;28681;28682;28683;28684;28685;28686	39250;39251;39252;39253;39254;39255;39256;39257;39258;39259;39260;39261;39262;39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273;39274;39275;39276;39277;39278;39279;39280;39281	39261			32	
AQVLAGGR	0	Unmodified	770.43989	0.43988615	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		10.361	9.7991	2	0.0042229	7380	160511_QHF_FH_JSI11i_2	68.7	29.482			0.87714	0.74707	NaN	1	1	Median	0.87714	0.74707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146730000	90330000	56404000	146730000	90330000	56404000	0	0	0	0	0	0	0	0	0	4647	5223	4377	28687;28688;28689	39282;39283;39284	39283			3	
AQVLVEDISDILEEHAEK	1	Unmodified	2037.0266	0.026615266	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.707	98.726	3	2.0326E-08	85563	160511_QHF_FH_JSI12i_3	100.92	92.926			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4648	2989	4378	28690	39285	39285			1	
AQVMEVK	1	Unmodified	803.42112	0.42112454	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.143	15.675	2	0.0046439	13130	160511_QHF_FH_JSI11i_1	97.798	38.817			1.0502	1.1085	15.276	4	0	Median	1.3553	1.1024	NaN	1	0	Median	0.95988	1.1147	NaN	1	0	Median	0.87588	0.85036	NaN	1	0	Median	1.1489	1.2093	NaN	1	0	Median	1214000000	592270000	621680000	290540000	126060000	164480000	332740000	180850000	151880000	270190000	164300000	105900000	320490000	121070000	199420000	4649	454	4379	28691;28692;28693;28694	39286;39287;39288;39289;39290;39291;39292;39293;39294	39287			9	
AQVPGPLTPEMEAR	0	Unmodified	1494.7501	0.75006325	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		53.906	53.111	2	0.0029256	47094	160511_QHF_FH_JSI9i_1	67.385	41.726			1.0013	0.89676	55.134	2	2	Median	1.6028	1.3243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62553	0.60725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133740000	74173000	59571000	44031000	18910000	25120000	0	0	0	89713000	55262000	34451000	0	0	0	4650	4792	4380	28695;28696	39295;39296	39296			2	
AQVQLNKK	2	Unmodified	927.55016	0.55016488	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			8.4967	7.9255	2;3	0.0022783	5806	160511_QHF_FH_JSI10i_3	63.565	28.757			0.5993	0.58174	48.839	2	1	Median	1.0138	0.82169	NaN	1	0	Median	0.35427	0.41186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164560000	111440000	53127000	44493000	25555000	18938000	120070000	85880000	34189000	0	0	0	0	0	0	4651	999	4381	28697;28698	39297;39298	39297			2	
AQVQLQLFK	1	Unmodified	1073.6233	0.62332982	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.43		3						4		2	1	2	2	69.293	62.839	2	1.3681E-05	53900	160511_QHF_FH_JSI12i_2	109.86	95.193			0.86745	0.87277	12.784	7	0	Median	1.048	0.8939	27.61	2	0	Median	0.71157	0.84153	NaN	1	0	Median	0.86242	0.83439	6.3596	2	0	Median	0.85374	0.94296	1.137	2	0	Median	150550000	78605000	71943000	29659000	13439000	16220000	2560100	1661100	898950	48541000	22553000	25988000	69787000	40951000	28836000	4652	2560	4382	28699;28700;28701;28702;28703;28704;28705	39299;39300;39301;39302;39303	39299			5	
AQVQVESQLSSAR	0	Unmodified	1401.7212	0.72120596	3131	Q6PKC3	TXNDC11	Thioredoxin domain-containing protein 11	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.908	31.573	2	0.0046874	28143	160511_QHF_FH_JSI10i_1	54.486	37.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4653	3131	4383	28706	39304	39304			1	
AQVSEGK	1	Unmodified	717.36572	0.36571815	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1									3	3	3	3.8868	3.6616	2	0.0082039	1978	160511_QHF_FH_JSI12i_1	73.248	30.248			1.777	2.0633	16.583	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.1462	2.4853	NaN	1	1	Median	2.165	2.0633	NaN	1	1	Median	1.7418	1.7853	NaN	1	1	Median	479500000	173920000	305570000	0	0	0	151930000	51175000	100750000	153920000	58331000	95586000	173650000	64414000	109240000	4654	3973	4384	28707;28708;28709;28710;28711;28712;28713;28714;28715	39305;39306;39307;39308;39309;39310;39311;39312;39313;39314;39315;39316	39312			12	
AQVSGQSAR	0	Unmodified	902.45699	0.45699277	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	4.9625	-0.14825	2	2.6123E-05	2348	160511_QHF_FH_JSI11i_1	104.2	74.89			0.84842	0.84703	16.345	8	2	Median	1.1103	0.9042	17.248	2	1	Median	0.67528	0.80057	14.589	2	1	Median	0.8034	0.77612	24.563	2	0	Median	0.84991	0.91817	18.016	2	0	Median	3502600000	1920500000	1582100000	344200000	154910000	189290000	947500000	587500000	360000000	1008800000	490220000	518560000	1202100000	687890000	514250000	4655	1519	4385	28716;28717;28718;28719;28720;28721;28722;28723	39317;39318;39319;39320;39321;39322;39323;39324;39325;39326	39318			10	
AQVSLLIR	0	Unmodified	898.56	0.56000128	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.1		2	3					5	5	5	4	2	4	56.731	49.826	2	0.00010137	27072	160513_QHF_FH_JSI11Kac_6	137.9	81.357			0.96024	1.0307	11.346	14	0	Median	1.217	1.0472	13.773	5	0	Median	0.80943	0.9711	12.431	3	0	Median	1.1122	1.0693	2.6098	2	0	Median	0.93912	0.96517	10.983	4	0	Median	2250700000	1083400000	1167300000	458780000	196820000	261960000	479720000	257680000	222040000	212610000	97639000	114970000	1099600000	531300000	568300000	4656	4296	4386	28724;28725;28726;28727;28728;28729;28730;28731;28732;28733;28734;28735;28736;28737;28738	39327;39328;39329;39330;39331;39332;39333;39334;39335;39336;39337;39338;39339;39340;39341;39342;39343;39344;39345;39346;39347	39331			21	
AQVTSLLGELQESQSR	0	Unmodified	1744.8955	0.89554151	5735	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.819	74.534	3	0.00014481	64751	160511_QHF_FH_JSI12i_3	57.936	45.735			1.151	1.0889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.151	1.0889	NaN	1	1	Median	31335000	11838000	19497000	0	0	0	0	0	0	0	0	0	31335000	11838000	19497000	4657	5735	4387	28739	39348	39348			1	
AQVVDLLQQELTAAEQR	0	Unmodified	1911.0062	0.0061545955	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	100.12	100.11	3	4.8326E-06	86736	160511_QHF_FH_JSI12i_3	86.455	71.06			0.93767	0.91288	25.371	3	3	Median	0.93767	0.82504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0482	1.1039	26.873	2	2	Median	57146000	30586000	26560000	13146000	8447600	4698000	0	0	0	0	0	0	44001000	22139000	21862000	4658	2574	4388	28740;28741;28742	39349;39350;39351	39351			3	
AQVVSNLK	1	Unmodified	857.49707	0.49706667	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	18.413	17.023	2	0.0025198	14277	160511_QHF_FH_JSI11i_1	79.474	47.004			0.80182	0.87694	17.735	9	0	Median	0.92424	0.77021	40.927	2	0	Median	0.67458	0.81157	9.9861	2	0	Median	0.82367	0.81217	11.765	2	0	Median	0.84898	0.89533	7.745	3	0	Median	1183500000	622960000	560520000	274090000	142220000	131870000	311530000	161510000	150010000	284440000	159090000	125350000	313430000	160140000	153300000	4659	5616	4389	28743;28744;28745;28746;28747;28748;28749;28750;28751	39352;39353;39354;39355;39356;39357;39358;39359;39360;39361;39362	39352			11	
AQVVYYSEMHK	1	Unmodified	1353.6387	0.63872189	4933	Q9NQY0	BIN3	Bridging integrator 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		38.999	29.726	3	0.0010761	15982	160513_QHF_FH_JSI9Kac_6	59.57	53.91			1.8051	1.6704	9.7987	2	0	Median	2.0754	1.7902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.57	1.5586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8758400	3329700	5428700	4658800	1661200	2997600	0	0	0	4099600	1668500	2431100	0	0	0	4660	4933	4390	28752;28753	39363;39364	39364			1	
AQWITYETTQEMLNYAK	1	Unmodified	2088.9826	0.98264196	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	92.243	91.421	2	0.014997	78919	160511_QHF_FH_JSI12i_2	44.616	31.212			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4661	1716	4391	28754	39365	39365			1	
AQWLISR	0	Unmodified	872.48684	0.48683634	5821				yes	yes	0	0	0	0		By MS/MS			3	0			1								1			17.009	15.998	3	0.059111	12854	160511_QHF_FH_JSI10i_3	20.699	8.1108	+		2.0215	2.346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0215	2.346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123400000	44485000	78919000	0	0	0	123400000	44485000	78919000	0	0	0	0	0	0	4662	5821	4392	28755	39366	39366			1	
AQWNQLQQLDTR	0	Acetyl (Protein N-term)	1541.7587	0.7586541	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	1	0	0				By MS/MS	12	0					1								1	78.503	70.327	2	0.038455	30450	160513_QHF_FH_JSI12Kac_2	43.512	37.129			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4663	1500	4393	28756	39367	39367			1	
AQYDELAR	0	Unmodified	964.46141	0.46140945	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.83	4	4	1			3	3			3	4	4	4	24.242	20.368	2	0.00015897	17930	160511_QHF_FH_JSI12i_1	124.08	17.724			0.94813	0.94467	9.2869	14	0	Median	1.1462	0.9614	16.314	2	0	Median	0.77242	0.86678	4.2479	4	0	Linear	0.95294	0.93455	8.6167	4	0	Median	0.96971	1.0668	9.4656	4	0	Median	6010100000	3176800000	2833300000	1500600000	746290000	754310000	1297900000	714980000	582880000	1667000000	898120000	768900000	1544600000	817450000	727190000	4664	842	4394	28757;28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771	39368;39369;39370;39371;39372;39373;39374;39375;39376;39377;39378;39379;39380;39381;39382;39383;39384;39385;39386;39387;39388;39389;39390;39391;39392;39393	39372			26	
AQYDELARK	1	Unmodified	1092.5564	0.55637247	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.98	4	8	8				3	6	1	6	9	8	7	19.079	15.744	2;3	5.3291E-08	12663	160511_QHF_FH_JSI12i_3	143.7	37.104			1.0613	1.0802	16.293	30	1	Median	1.1378	0.95502	15.731	6	0	Median	0.95163	1.1714	19.164	9	1	Median	1.2148	1.2152	10.433	8	0	Median	0.95358	1.0555	9.3458	7	0	Median	17324000000	8424700000	8899000000	2148200000	1039600000	1108600000	3090300000	1502500000	1587800000	4999200000	2270500000	2728700000	7085900000	3612100000	3473800000	4665	842	4395	28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801	39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407;39408;39409;39410;39411;39412;39413;39414;39415;39416;39417;39418;39419;39420;39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431;39432;39433;39434;39435;39436;39437;39438;39439;39440;39441;39442;39443;39444	39443			49	
AQYEDIANR	0	Unmodified	1078.5043	0.5043369	51;79;45	CON__P05787;P05787;CON__O95678;O95678;CON__Q922U2;CON__Q5XQN5	KRT8;KRT75	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.14	4	4	1			4	4	3		6	6	4	4	22.094	16.962	2	1.3841E-23	11472	160513_QHF_FH_JSI10Kac_3	177.36	152.44		+	0.997	0.98389	8.64	18	2	Median	1.193	0.97898	6.7523	5	1	Median	0.80442	0.93295	7.1808	5	1	Median	1.034	1.039	5.3546	4	0	Median	0.93423	1.0189	13.667	4	0	Median	15324000000	7605700000	7718100000	4107000000	1841000000	2266000000	3082000000	1631200000	1450700000	3435500000	1771200000	1664300000	4699400000	2362300000	2337000000	4666	51;45;79	4396	28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821	39445;39446;39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458;39459;39460;39461;39462;39463;39464;39465;39466;39467;39468;39469;39470;39471	39468			27	
AQYEDIAQK	1	Unmodified	1064.5138	0.51383895	810	P04264	KRT1	Keratin, type II cytoskeletal 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.476	20.292	2	0.0016754	17120	160511_QHF_FH_JSI9i_1	68.016	58.105		+	0.74824	0.61952	NaN	1	0	Median	0.74824	0.61952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159750000	108200000	51550000	159750000	108200000	51550000	0	0	0	0	0	0	0	0	0	4667	810	4397	28822	39472	39472			1	
AQYEDIAR	0	Unmodified	964.46141	0.46140945	52	CON__P07744			yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.455	20.498	2	0.020956	17497	160511_QHF_FH_JSI9i_2	45.335	0		+	1.2547	1.079	NaN	1	0	Median	1.2547	1.079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59267000	28282000	30985000	59267000	28282000	30985000	0	0	0	0	0	0	0	0	0	4668	52	4398	28823	39473	39473			1	
AQYEEMAK	1	Unmodified	968.42733	0.42733213	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	3	1	16.721	13.9	2	0.0020108	11734	160511_QHF_FH_JSI10i_1	83.313	72.621		+	1.0934	0.99405	18.315	6	0	Median	1.0878	0.88472	NaN	1	0	Median	0.78259	0.92509	NaN	1	0	Median	1.099	1.0682	19.6	3	0	Median	1.2589	1.3058	NaN	1	0	Median	2766300000	1481000000	1285200000	627080000	365680000	261400000	911520000	504660000	406860000	693790000	338810000	354970000	533890000	271880000	262010000	4669	53;71	4399	28824;28825;28826;28827;28828;28829	39474;39475;39476;39477;39478;39479	39478			6	
AQYEEMAK	1	Oxidation (M)	984.42225	0.42224675	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	14.764	14.239	2	0.028876	11482	160511_QHF_FH_JSI9i_1	46.994	23.226		+	1.4082	1.159	12.546	3	0	Plateau	1.4082	1.159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0991	1.0863	NaN	1	0	Median	1.3138	1.3842	NaN	1	0	Median	417040000	186290000	230750000	169500000	73193000	96309000	0	0	0	103380000	49870000	53511000	144160000	63226000	80932000	4670	53;71	4399	28830;28831;28832	39480	39480			1	
AQYEEVAR	0	Unmodified	964.46141	0.46140945	80	CON__Q6ISB0;CON__Q9NSB2;Q9NSB2	KRT84	Keratin, type II cuticular Hb4	yes	no	0	0	0	0			By MS/MS		13	0						1						1		28.389	20.508	2	0.021298	12434	160513_QHF_FH_JSI11Kac_3	56.011	0		+	0.96977	0.94792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96977	0.94792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11500000	5796400	5703500	0	0	0	0	0	0	11500000	5796400	5703500	0	0	0	4671	80	4400	28833	39481	39481			1	
AQYEQTLAELHR	0	Unmodified	1457.7263	0.72629134	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	1	5	4	40.921	40.4	2;3	1.3887E-06	34653	160511_QHF_FH_JSI11i_2	122.34	108.38			1.0783	1.0395	15.965	10	2	Median	1.1483	0.97979	NaN	1	0	Median	0.83161	1.0105	NaN	1	0	Median	1.0844	1.0237	21.236	5	2	Median	1.0722	1.0554	11.555	3	0	Plateau	1441800000	715680000	726130000	155770000	69895000	85874000	255140000	143780000	111360000	492640000	234880000	257770000	538250000	267130000	271130000	4672	5378	4401	28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845	39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497;39498	39491			16	
AQYKGAASEAGR	1	Acetyl (K);Acetyl (Protein N-term)	1291.6157	0.61567826	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						2	1	2	43.766	34.768	2	0.00042498	14422	160513_QHF_FH_JSI10Kac_1	76.655	65.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4673	2529	4402	28846;28847;28848;28849;28850	39499;39500;39501;39502;39503	39502	2527		5	
AQYLAAK	1	Unmodified	763.42284	0.4228391	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		19.426	11.797	2	0.047498	8479	160513_QHF_FH_JSI11Kac_4	50.12	27.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4674	488	4403	28851	39504	39504			1	
AQYSLPGILHFLQHEWAR	0	Unmodified	2165.117	0.11704245	381	O43815	STRN	Striatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	93.786	85.752	4	8.7297E-25	49944	160513_QHF_FH_JSI10Kac_6	155.28	141.45			0.7512	0.9037	15.588	3	0	Plateau	1.0573	0.92739	NaN	1	0	Median	0.7512	0.9037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1365	1.1981	NaN	1	0	Median	452800000	244150000	208650000	77961000	35477000	42484000	299070000	172240000	126830000	0	0	0	75763000	36432000	39331000	4675	381	4404	28852;28853;28854	39505;39506;39507	39506			3	
AQYYLPDGSTIEIGPSR	0	Unmodified	1865.9159	0.9159426	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			78.161	77.998	2	0.00071527	70729	160511_QHF_FH_JSI10i_1	93.494	61.854			1.0076	1.2058	6.8636	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0076	1.2058	6.8636	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	530440000	272270000	258170000	0	0	0	530440000	272270000	258170000	0	0	0	0	0	0	4676	1941	4405	28855;28856	39508;39509	39508			2	
ARAEAEQMAK	1	Unmodified	1103.5393	0.53934219	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			6.5057	6.0094	2	0.00055232	4050	160511_QHF_FH_JSI10i_3	88.496	67.975			0.89581	1.004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89581	1.004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22522000	11775000	10746000	0	0	0	22522000	11775000	10746000	0	0	0	0	0	0	4677	590	4406	28857	39510	39510			1	
ARAEEAEAQK	1	Unmodified	1101.5415	0.54145068	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		4.7378	4.5343	2	0.0036692	2379	160511_QHF_FH_JSI10i_2	71.555	28.956			1.1932	1.2854	3.3821	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0654	1.3165	NaN	1	0	Median	1.3364	1.255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	158180000	82128000	76055000	0	0	0	81441000	38301000	43141000	76741000	43827000	32914000	0	0	0	4678	2636	4407	28858;28859	39511;39512	39512			2	
ARDAAGSGDKPGADTGR	1	Unmodified	1600.7554	0.75535964	4051	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.4623	4.9629	3	0.025543	2943	160511_QHF_FH_JSI9i_3	41.554	22.231			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4679	4051	4408	28860	39513	39513			1	
ARDDLITDLLNEAK	1	Unmodified	1585.8312	0.83115034	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	90.21	90.099	2;3	4.3553E-05	80414	160511_QHF_FH_JSI11i_3	108.71	84.779			0.90502	0.91465	11.546	6	3	Median	NaN	NaN	NaN	0	0	Median	0.63156	0.77427	NaN	1	1	Median	0.97346	0.88695	13.305	2	0	Median	0.91197	0.94952	8.5974	3	2	Median	197360000	105870000	91495000	0	0	0	20155000	12348000	7807000	103260000	56114000	47150000	73946000	37408000	36538000	4680	1455	4409	28861;28862;28863;28864;28865;28866	39514;39515;39516;39517;39518;39519;39520;39521;39522;39523;39524	39516			11	
ARDINAVLIDMER	0	Unmodified	1514.7875	0.78751139	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				62.449	60.94	2	0.010878	50047	160511_QHF_FH_JSI9i_3	61.435	36.581			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4681	1857	4410	28867	39525	39525			1	
ARDLALAIR	0	Unmodified	997.60326	0.60326308	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			33.511	32.095	3	0.0093958	26856	160511_QHF_FH_JSI10i_3	35.652	12.279			0.94599	0.90268	12.522	2	0	Median	1.2049	0.98625	NaN	1	0	Median	0.74274	0.82619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49234000	22479000	26756000	18627000	7807000	10820000	30607000	14672000	15935000	0	0	0	0	0	0	4682	1490	4411	28868;28869	39526	39526			1	
ARDYCTSAK	1	Unmodified	1070.4815	0.48149296	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			5.3019	4.8249	2	0.00090491	2874	160511_QHF_FH_JSI10i_3	90.906	80.491			0.9789	1.1242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9789	1.1242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33594000	15147000	18447000	0	0	0	33594000	15147000	18447000	0	0	0	0	0	0	4683	2349	4412	28870	39527;39528	39528			2	
ARDYDAMGSQTK	1	Unmodified	1341.5983	0.59831364	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							3	4	3	2	10.745	10.397	2;3	1.3114E-22	8034	160511_QHF_FH_JSI11i_3	198.32	164.57			0.8471	0.95802	26.329	12	0	Median	1.6805	1.4726	15.142	3	0	Plateau	0.82886	0.99494	5.385	4	0	Median	0.93912	0.86214	9.6524	3	0	Median	0.62124	0.62673	18.007	2	0	Median	1334500000	669930000	664590000	228260000	90579000	137680000	431040000	226850000	204190000	560640000	287270000	273370000	114580000	65230000	49346000	4684	5487	4413	28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882	39529;39530;39531;39532;39533;39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544	39532			16	
ARDYDAMGSQTK	1	Oxidation (M)	1357.5932	0.59322826	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		10.445	10.445	2	0.023186	8057	160511_QHF_FH_JSI11i_3	62.303	44.438			1.1671	1.049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1671	1.049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33867000	18048000	15819000	0	0	0	0	0	0	33867000	18048000	15819000	0	0	0	4685	5487	4413	28883	39545;39546	39546			2	
AREESWGPPR	0	Unmodified	1183.5734	0.57341951	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	18.195	17.444	3	2.9685E-05	13965	160511_QHF_FH_JSI9i_3	89.171	80.457			1.1343	0.94362	52.994	3	1	Median	1.1343	0.94362	NaN	1	0	Median	0.48461	0.55891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6116	1.613	NaN	1	0	Median	260280000	124100000	136180000	100370000	48600000	51770000	68218000	34314000	33904000	0	0	0	91689000	41184000	50505000	4686	2502	4414	28884;28885;28886	39547;39548;39549	39548			3	
AREETDKEEPASK	2	Unmodified	1488.7056	0.70561548	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		4.9789	4.9789	3	0.0070906	2671	160511_QHF_FH_JSI11i_3	48.527	28.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4687	840	4415	28887	39550	39550			1	
AREIDESLIFYK	1	Unmodified	1482.7718	0.77184455	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	61.353	61.078	2;3	9.1568E-05	52718	160511_QHF_FH_JSI12i_3	79.466	64.78			0.86124	0.86547	0.3917	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86124	0.86547	0.3917	2	0	Median	217710000	91941000	125770000	0	0	0	0	0	0	0	0	0	217710000	91941000	125770000	4688	2404	4416	28888;28889	39551;39552	39552			2	
AREILVEESNVQR	0	Unmodified	1541.8162	0.81616898	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			29.443	28.188	3	3.5946E-05	23428	160511_QHF_FH_JSI10i_3	89.231	76.962			1.0182	0.88111	24.509	3	1	Median	1.1996	1.0052	18.638	2	1	Median	0.61816	0.70279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101310000	61098000	40210000	66821000	39041000	27780000	34487000	22058000	12430000	0	0	0	0	0	0	4689	1912	4417	28890;28891;28892;28893	39553;39554;39555	39553			3	
ARELTVQK	1	Unmodified	943.54508	0.5450795	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.7547	9.1115	3	0.011709	6764	160511_QHF_FH_JSI9i_3	42.19	25.857			1.2147	0.96735	NaN	1	0	Median	1.2147	0.96735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128320000	53355000	74965000	128320000	53355000	74965000	0	0	0	0	0	0	0	0	0	4690	4372	4418	28894	39556	39556			1	
ARENIQK	1	Unmodified	857.47191	0.47191456	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.46	1	2	5					3	3	4	5	2	3	4.7678	0.77707	2;3	0.001264	2239	160511_QHF_FH_JSI10i_3	101.64	69.173			1.0763	1.1	24.421	13	1	Median	1.1458	0.9735	18.214	3	1	Median	0.96882	1.1192	19.243	5	0	Median	1.0311	0.98896	22.148	2	0	Median	0.77175	0.84298	43.014	3	0	Plateau	11659000000	5779200000	5880200000	5928500000	2763800000	3164600000	4564600000	2363200000	2201300000	1125600000	630870000	494740000	40688000	21231000	19457000	4691	1327	4419	28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908	39557;39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568	39561			12	
ARENPSEEAQNLVEFTDEEGYGR	0	Unmodified	2639.1736	0.17356687	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2	0		4								2	1	1		68.169	67.401	3	7.6936E-20	59737	160511_QHF_FH_JSI10i_2	151.42	144.22			1.582	1.3468	22.46	3	0	Median	1.582	1.3468	NaN	1	0	Median	0.97517	1.1775	NaN	1	0	Median	1.762	1.8254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	313300000	150100000	163200000	146030000	61441000	84590000	144440000	78587000	65857000	22829000	10071000	12758000	0	0	0	4692	2319	4420	28909;28910;28911;28912	39569;39570;39571;39572	39572			4	
ARESYVETELIFALAK	1	Unmodified	1838.9778	0.97781458	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		2	1	1	90.077	88.415	3	5.2983E-06	81486	160511_QHF_FH_JSI11i_3	119.56	10.205			0.84971	0.98313	18.946	4	2	Median	NaN	NaN	NaN	0	0	Median	0.84543	0.98313	7.6552	2	2	Median	1.3638	1.2763	NaN	1	0	Median	0.80605	0.81525	NaN	1	0	Median	332710000	178870000	153840000	0	0	0	126560000	81091000	45469000	110480000	44592000	65887000	95668000	53184000	42484000	4693	2155	4421	28913;28914;28915;28916	39573;39574;39575;39576;39577	39574			5	
ARFEELCSDLFR	0	Unmodified	1541.7297	0.72966216	954;1108	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		68.309	67.319	2;3	2.0132E-15	56373	160511_QHF_FH_JSI10i_3	178.71	143.99			1.0803	1.0558	9.0823	6	2	Median	1.3519	1.0947	17.876	2	1	Median	0.91475	1.0686	1.8787	2	0	Median	1.0803	1.016	5.6114	2	1	Median	NaN	NaN	NaN	0	0	Median	945070000	449030000	496040000	74776000	35185000	39590000	383900000	191300000	192600000	486400000	222540000	263860000	0	0	0	4694	954;1108	4422	28917;28918;28919;28920;28921;28922	39578;39579;39580;39581;39582;39583;39584;39585	39581			8	
ARFEELNADLFR	0	Unmodified	1479.747	0.74702678	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.28	5.5		12	11						6	7	9	6	7	68.089	65.359	2;3	5.5094E-78	57299	160511_QHF_FH_JSI11i_2	242.82	195.22			0.90643	0.97966	20.997	27	10	Median	1.1567	0.97343	11.795	6	1	Median	0.83504	0.98781	33.366	9	5	Median	0.88243	1.0022	8.924	5	0	Linear	0.86986	0.92779	15.302	7	4	Median	23796000000	12062000000	11735000000	4885300000	2078900000	2806300000	10274000000	5816500000	4457300000	6856600000	3204500000	3652100000	1780800000	961860000	818970000	4695	985;1827	4423	28923;28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943;28944;28945;28946;28947;28948;28949;28950;28951	39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602;39603;39604;39605;39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633;39634;39635;39636;39637;39638;39639	39620			54	
ARFEEVLSK	1	Unmodified	1077.5819	0.58185893	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	2	3	2	2	33.039	31.01	2;3	3.5086E-07	26053	160511_QHF_FH_JSI12i_3	128.35	83.999			1.1322	1.0139	15.288	7	0	Median	1.2486	1.0088	6.2005	2	0	Median	0.78053	0.89459	13.549	3	0	Plateau	1.2646	1.1996	15.155	2	0	Median	NaN	NaN	NaN	0	0	Median	3601700000	1625500000	1976200000	1050400000	428000000	622410000	729820000	387150000	342670000	1821500000	810330000	1011100000	0	0	0	4696	4260	4424	28952;28953;28954;28955;28956;28957;28958;28959;28960	39640;39641;39642;39643;39644;39645;39646;39647;39648;39649;39650;39651;39652	39651			13	
ARFPAFEL	0	Unmodified	949.50215	0.50215205	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	74.584	73.757	2	0.011992	60868	160511_QHF_FH_JSI9i_3	85.265	80.124			0.99673	0.95077	7.0539	8	0	Median	1.096	0.89508	6.9883	2	0	Median	0.77379	0.92388	4.4575	2	0	Median	1.0804	1.0433	1.7686	2	0	Median	0.91944	0.96927	3.1247	2	0	Median	2865000000	1360300000	1504600000	623360000	283480000	339880000	629720000	336750000	292980000	957140000	415360000	541780000	654760000	324750000	330000000	4697	380	4425	28961;28962;28963;28964;28965;28966;28967;28968	39653;39654;39655;39656;39657;39658;39659;39660;39661;39662	39659			10	
ARGDSEALDEES	0	Unmodified	1277.5372	0.53715317	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.972	11.569	2	2.7987E-05	9223	160511_QHF_FH_JSI11i_1	123.96	122.63			1.0451	1.0964	6.5769	4	0	Median	1.3124	1.0777	NaN	1	0	Median	0.97109	1.134	NaN	1	0	Median	1.1248	1.1155	NaN	1	0	Median	0.95159	0.979	NaN	1	0	Median	490190000	247150000	243040000	108030000	47224000	60806000	136290000	71066000	65227000	111560000	58096000	53460000	134310000	70760000	63546000	4698	3277	4426	28969;28970;28971;28972	39663;39664;39665;39666;39667	39663			5	
ARGGNIGDGGGAADR	0	Unmodified	1342.6338	0.63378794	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			6.3529	5.8389	2;3	0.00052596	3819	160511_QHF_FH_JSI9i_3	62.813	54.3			1.4186	1.136	13.666	3	0	Plateau	1.356	1.0962	5.0432	2	0	Median	0.73828	0.87224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208890000	92192000	116700000	182450000	79704000	102750000	26434000	12488000	13946000	0	0	0	0	0	0	4699	1846	4427	28973;28974;28975	39668;39669;39670	39669			3	
ARHEVLLISAEQDK	1	Unmodified	1607.8631	0.86311917	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			42.017	33.399	3	0.054147	18563	160513_QHF_FH_JSI10Kac_6	30.739	17.972			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4700	2147	4428	28976	39671	39671			1	
ARIEEDKK	2	Unmodified	987.53491	0.53490874	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			4.7071	4.2301	3	0.008843	2276	160511_QHF_FH_JSI10i_3	60.518	27.256			0.56945	0.65209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56945	0.65209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	602220000	410730000	191490000	0	0	0	602220000	410730000	191490000	0	0	0	0	0	0	4701	3882	4429	28977	39672	39672			1	
ARIPFYGSYTEMDPVIIASEGVEK	1	Unmodified	2671.3204	0.32035445	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		98.68	98.511	3	4.5013E-06	87451	160511_QHF_FH_JSI11i_3	63.115	60.313			0.94933	0.90245	7.0871	3	1	Plateau	1.1947	1.024	NaN	1	1	Median	0.79331	0.9092	NaN	1	0	Median	0.94933	0.90245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55507000	24953000	30554000	7127500	2584400	4543100	11381000	4659200	6722200	36998000	17709000	19289000	0	0	0	4702	1929	4430	28978;28979;28980;28981	39673;39674;39675	39673			3	
ARLEIEPEWAYGK	1	Unmodified	1560.7936	0.79364262	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	4	3	2	61.566	60.738	2;3	7.3837E-10	53608	160511_QHF_FH_JSI11i_3	152.14	116.72			0.86891	0.98226	12.307	13	1	Median	1.288	1.0374	19.137	4	0	Median	0.82752	0.97765	10.039	4	1	Median	1.0955	1.0081	6.3673	3	0	Median	0.82538	0.86032	1.9008	2	0	Median	2529100000	1218600000	1310500000	431600000	198880000	232720000	833840000	401590000	432250000	962370000	457920000	504450000	301250000	160190000	141060000	4703	2158	4431	28982;28983;28984;28985;28986;28987;28988;28989;28990;28991;28992;28993;28994	39676;39677;39678;39679;39680;39681;39682;39683;39684;39685;39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696;39697;39698;39699;39700;39701;39702;39703;39704;39705;39706;39707;39708	39680			33	
ARLEVENQAK	1	Unmodified	1156.62	0.62003536	5455	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								2	2		12.102	11.738	2;3	2.4342E-05	9167	160511_QHF_FH_JSI11i_3	91.549	78.541			0.96988	0.92041	53.598	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2396	1.4059	82.518	2	1	Median	0.96988	0.92041	3.8295	2	0	Median	NaN	NaN	NaN	0	0	Median	211840000	75353000	136480000	0	0	0	133790000	42300000	91494000	78042000	33053000	44989000	0	0	0	4704	5455	4432	28995;28996;28997;28998	39709;39710;39711;39712	39709			4	
ARNEYLLALEATNASVFK	1	Unmodified	2009.0582	0.058190166	467	O75044;P0DMP2	SRGAP2;SRGAP2B	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B	yes	no	0	0	0	1	By MS/MS		By MS/MS		3	0			3							2		1		85.371	84.555	3	5.5784E-06	75278	160511_QHF_FH_JSI11i_3	96.487	78.998			1.1115	1.004	25.234	3	3	Median	1.0764	0.91595	34.892	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53180000	26640000	26540000	19665000	10786000	8879400	0	0	0	33514000	15854000	17660000	0	0	0	4705	467	4433	28999;29000;29001	39713;39714;39715	39713			3	
ARNPNELSVSANQK	1	Unmodified	1526.7801	0.78011783	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			16.416	15.361	3	0.00021458	12209	160511_QHF_FH_JSI9i_3	70.889	63.344			1.1843	0.94127	NaN	1	0	Median	1.1843	0.94127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51413000	29897000	21516000	51413000	29897000	21516000	0	0	0	0	0	0	0	0	0	4706	3169	4434	29002;29003	39716;39717;39718;39719	39719			4	
ARPATDSFDDYPPR	0	Unmodified	1606.7376	0.73758431	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.31		11	23					11		17	15	10	3	36.255	32.872	2;3	3.1813E-13	27988	160511_QHF_FH_JSI10i_3	98.943	83.75			1.0561	0.98068	27.391	24	12	Median	1.4058	1.1699	20.521	10	6	Median	0.73377	0.83496	23.412	7	4	Median	1.062	1.0358	23.887	6	2	Median	1.0798	1.1419	NaN	1	0	Median	977320000	488280000	489040000	426600000	176170000	250420000	430390000	262160000	168230000	118120000	48769000	69352000	2217000	1186600	1030400	4707	1237	4435	29004;29005;29006;29007;29008;29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028;29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048	39720;39721;39722;39723;39724;39725;39726;39727;39728;39729;39730;39731;39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742;39743;39744;39745;39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758;39759;39760;39761;39762;39763;39764;39765;39766;39767;39768;39769;39770;39771;39772	39739			53	
ARPDDEEGAAVAPGHPLAK	1	Unmodified	1899.9439	0.94388869	5688	Q9Y5Y0	FLVCR1	Feline leukemia virus subgroup C receptor-related protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		25.273	25.273	3	0.0011423	21567	160511_QHF_FH_JSI11i_3	52.298	35.614			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4708	5688	4436	29049	39773	39773			1	
ARPEDVISEGR	0	Unmodified	1227.6208	0.62076364	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	23.669	23.344	2;3	0.00013691	19778	160511_QHF_FH_JSI11i_3	103.08	77.19			1.1154	1.0817	5.5246	7	0	Median	1.2772	1.098	NaN	1	0	Median	0.83362	1.0356	NaN	1	0	Median	1.1604	1.0976	1.0024	3	0	Median	1.0019	1.0109	9.5639	2	0	Median	521510000	265480000	256020000	43563000	19627000	23936000	68633000	38720000	29913000	259230000	123050000	136180000	150080000	84088000	65996000	4709	1256	4437	29050;29051;29052;29053;29054;29055;29056	39774;39775;39776;39777;39778;39779;39780;39781;39782;39783	39774			10	
ARPELALFMIK	1	Unmodified	1287.7373	0.73731372	414	O60353	FZD6	Frizzled-6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				77.925	76.507	3	0.026538	62965	160511_QHF_FH_JSI9i_3	37.426	33.571			0.64125	0.55073	NaN	1	1	Median	0.64125	0.55073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6845800	3608600	3237200	6845800	3608600	3237200	0	0	0	0	0	0	0	0	0	4710	414	4438	29057	39784	39784			1	
ARPELEELLAK	1	Unmodified	1267.7136	0.71360139	4086	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			58.918	57.599	3	0.00024495	47320	160511_QHF_FH_JSI9i_3	61.375	46.499			0.76012	0.88022	3.9475	3	1	Plateau	1.0866	0.86751	NaN	1	0	Median	0.71471	0.84805	5.2663	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183930000	98928000	84999000	48863000	26180000	22684000	135060000	72748000	62315000	0	0	0	0	0	0	4711	4086	4439	29058;29059;29060	39785;39786;39787	39785			3	
ARPFPDGLAEDIDK	1	Unmodified	1542.7678	0.7678218	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.59	3	9	10					5	2	8	7	8	6	60.185	57.255	2;3	4.4167E-29	50223	160511_QHF_FH_JSI9i_2	166.6	130.08			0.93072	0.97402	10.385	23	3	Median	1.2166	1.0427	7.2294	6	0	Median	0.86652	1.0405	2.4876	5	0	Median	0.93965	0.92413	8.1337	7	1	Median	0.83615	0.84668	9.0147	5	2	Median	9731900000	4928700000	4803200000	1833600000	787460000	1046100000	2526300000	1298600000	1227700000	4381300000	2364100000	2017100000	990810000	478450000	512360000	4712	1033	4440	29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084;29085;29086;29087;29088;29089	39788;39789;39790;39791;39792;39793;39794;39795;39796;39797;39798;39799;39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821;39822;39823;39824;39825;39826;39827;39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839;39840;39841;39842;39843;39844;39845;39846;39847;39848;39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859	39824			72	
ARPFPDGLAEDIDKGEVSAR	1	Unmodified	2142.0705	0.070545766	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.68	0.466		8	17							11	12	2		62.029	60.869	3;4	3.7228E-54	50897	160511_QHF_FH_JSI10i_3	216.44	194.43			0.96966	0.95028	38.997	22	13	Median	1.3193	1.0804	28.02	8	7	Median	0.80198	0.92468	37.746	12	5	Median	0.59974	0.57703	64.957	2	1	Median	NaN	NaN	NaN	0	0	Median	5897800000	2791200000	3106600000	2518100000	996080000	1522000000	3028900000	1592200000	1436700000	350820000	202990000	147820000	0	0	0	4713	1033	4441	29090;29091;29092;29093;29094;29095;29096;29097;29098;29099;29100;29101;29102;29103;29104;29105;29106;29107;29108;29109;29110;29111;29112;29113;29114	39860;39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884;39885;39886;39887;39888;39889;39890;39891;39892;39893;39894;39895;39896;39897;39898	39867			38	
ARPPSEGEFIDCFQK	1	Unmodified	1779.825	0.82501911	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		53.343	53.343	3	0.0045369	47231	160511_QHF_FH_JSI11i_3	53.828	35.69			1.2081	1.1329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2081	1.1329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46311000	21221000	25091000	0	0	0	0	0	0	46311000	21221000	25091000	0	0	0	4714	4751	4442	29115	39899	39899			1	
ARQEELYSELQAR	0	Unmodified	1591.7954	0.79543354	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By matching	By MS/MS			2.33	0.471		2	1							1	2			38.687	37.525	3	0.00013905	33072	160511_QHF_FH_JSI10i_2	71.976	66.072			1.2174	1.0403	15.528	3	0	Plateau	1.2835	1.0863	NaN	1	0	Median	1.0062	1.2014	20.363	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177590000	90573000	87019000	39521000	17128000	22393000	138070000	73445000	64626000	0	0	0	0	0	0	4715	2636	4443	29116;29117;29118	39900;39901;39902	39902			3	
ARQEFEER	0	Unmodified	1063.5047	0.50467125	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			3							1	2			7.2735	6.742	2;3	0.027043	4681	160511_QHF_FH_JSI10i_3	34.206	19.055			0.66565	0.77444	20.146	3	1	Median	1.2979	1.0436	NaN	1	0	Median	0.63705	0.74207	6.0372	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121840000	66260000	55577000	31002000	14076000	16927000	90834000	52184000	38650000	0	0	0	0	0	0	4716	2560	4444	29119;29120;29121	39903;39904	39903			2	
ARQELQEAK	1	Unmodified	1071.5673	0.5672715	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.67	4.64		2	3					1		2	2	2		5.9497	5.577	2;3	1.8116E-10	3536	160511_QHF_FH_JSI11i_3	150.35	125.43			0.82784	0.7588	22.169	5	1	Median	1.0099	0.84892	28.274	2	0	Median	0.55615	0.65552	20.691	2	1	Median	0.8927	0.8191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	408270000	213590000	194680000	98710000	51087000	47624000	169990000	82101000	87887000	139570000	80401000	59173000	0	0	0	4717	2587	4445	29122;29123;29124;29125;29126;29127	39905;39906;39907;39908;39909;39910;39911;39912;39913	39905			9	
ARQELQEAKEK	2	Acetyl (K)	1370.7154	0.7153923	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		19.769	10.338	3	0.0579	8050	160513_QHF_FH_JSI11Kac_5	45.257	30.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1048300	1048300	0	0	0	0	0	0	0	1048300	1048300	0	0	0	0	4718	2587	4446	29128	39914	39914			1	
ARQLEEELR	0	Unmodified	1142.6044	0.60438529	73	CON__Q3SX28			yes	yes	0	0	0	1		By MS/MS			3	0			1								1			19.122	17.994	3	0.0059553	14763	160511_QHF_FH_JSI10i_3	43.958	23.827		+	0.95297	1.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95297	1.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82019000	33572000	48446000	0	0	0	82019000	33572000	48446000	0	0	0	0	0	0	4719	73	4447	29129	39915	39915			1	
ARSDEGQLSPATR	0	Unmodified	1386.6852	0.68515481	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1			By MS/MS		15	0								1				1		15.765	6.3286	3	0.043059	6293	160513_QHF_FH_JSI11Kac_5	26.124	4.0782			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4720	2636	4448	29130	39916	39916			1	
ARSEAAEAGNGAETMAAEAESAQTR	0	Unmodified	2478.1041	0.10410709	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				41.883	40.833	3	8.3648E-21	35741	160511_QHF_FH_JSI9i_2	108.57	95.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4721	384	4449	29131	39917	39917			1	
ARVEAGGLK	1	Unmodified	899.51886	0.51886475	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		9.7505	9.4289	3	0.00031696	7064	160511_QHF_FH_JSI11i_3	74.841	46.637			1.3347	1.1663	37.077	2	1	Median	1.8768	1.516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94917	0.89735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	541880000	229640000	312240000	274660000	90585000	184080000	0	0	0	267220000	139050000	128170000	0	0	0	4722	4157	4450	29132;29133;29134;29135	39918;39919;39920;39921;39922	39918			5	
ARVEENFLK	1	Unmodified	1104.5928	0.59275797	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	29.309	28.962	2;3	1.2515E-05	24904	160511_QHF_FH_JSI11i_3	89.679	53.254			1.0608	0.97465	17.813	6	0	Median	0.98396	0.85468	NaN	1	0	Median	0.65697	0.81642	NaN	1	0	Median	1.2251	1.148	4.5746	2	0	Median	0.95657	0.9637	23.253	2	0	Median	832270000	466050000	366220000	41807000	25281000	16526000	48375000	30167000	18208000	384620000	216140000	168480000	357470000	194460000	163010000	4723	3959	4451	29136;29137;29138;29139;29140;29141	39923;39924;39925	39924			3	
ARVEVERDNLAEDIMR	0	Unmodified	1914.9582	0.95815855	913	P08670	VIM	Vimentin	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				53.165	51.582	4	0.0034138	42313	160511_QHF_FH_JSI9i_3	53.169	36.29			1.7109	1.3924	NaN	1	1	Median	1.7109	1.3924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37313000	13969000	23343000	37313000	13969000	23343000	0	0	0	0	0	0	0	0	0	4724	913	4452	29142	39926	39926			1	
ARVITEEEK	1	Unmodified	1073.5717	0.57168818	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By matching	11.8	5.63		1						3		2		1	1	12.09	4.859	2;3	0.0024511	5016	160513_QHF_FH_JSI11Kac_5	53.751	25.024			1.1722	1.05	12.123	4	0	Median	1.386	1.1605	16.311	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1097	1.0661	NaN	1	0	Median	0.90297	0.99056	NaN	1	0	Median	82412000	34169000	48243000	76418000	31569000	44850000	0	0	0	2799300	1032000	1767300	3194000	1568300	1625700	4725	1275	4453	29143;29144;29145;29146	39927;39928;39929	39929			2	
ASAAFSSVGSVITK	1	Unmodified	1323.7034	0.70343063	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.9	7	7	6				1	3	3	6	7	8	6	59.211	56.069	2;3	1.2065E-30	30283	160513_QHF_FH_JSI11Kac_5	172.11	143.16			0.92974	0.98823	11.053	27	5	Median	1.1968	1.0298	14.653	6	2	Median	0.8138	0.98823	6.5738	7	0	Median	0.94562	0.93952	10.937	8	1	Median	1.0025	1.0511	10.218	6	2	Median	7459500000	3770000000	3689500000	1197600000	578490000	619070000	1325900000	773590000	552280000	2029900000	965600000	1064300000	2906100000	1452300000	1453800000	4726	1858	4454	29147;29148;29149;29150;29151;29152;29153;29154;29155;29156;29157;29158;29159;29160;29161;29162;29163;29164;29165;29166;29167;29168;29169;29170;29171;29172;29173	39930;39931;39932;39933;39934;39935;39936;39937;39938;39939;39940;39941;39942;39943;39944;39945;39946;39947;39948;39949;39950;39951;39952;39953;39954;39955;39956;39957;39958;39959;39960;39961;39962;39963;39964;39965;39966;39967;39968;39969;39970;39971;39972;39973;39974;39975	39961			46	
ASAAPKPEPVPVQK	2	Unmodified	1417.7929	0.79291434	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.738	7	4	2							2	3	3	5	22.348	21.85	2;3	0.00039932	18580	160511_QHF_FH_JSI9i_2	67.275	50.064			1.036	0.9597	23.021	13	1	Median	1.1896	0.98596	3.8173	2	0	Median	0.78109	0.91046	31.347	3	0	Plateau	1.043	1.0266	10.992	3	0	Median	1.036	1.1058	22.757	5	1	Median	1545900000	850500000	695440000	170610000	81146000	89467000	384710000	254570000	130140000	411360000	216870000	194490000	579250000	297910000	281340000	4727	4108	4455	29174;29175;29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186	39976;39977;39978;39979;39980;39981;39982;39983;39984;39985;39986;39987	39983			12	
ASADLMSYCEEHAR	0	Unmodified	1638.6766	0.67664031	5238	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	34.814	33.884	3	1.413E-05	28779	160511_QHF_FH_JSI11i_2	65.219	60.518			1.2733	1.4876	34.717	3	1	Plateau	1.2733	1.0881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.1059	NaN	1	1	Median	1.7457	2.0011	NaN	1	0	Median	250570000	101620000	148950000	37755000	15564000	22191000	0	0	0	147170000	59584000	87583000	65646000	26468000	39177000	4728	5238	4456	29187;29188;29189;29190	39988;39989;39990;39991	39991			3	
ASAEGPLLGPEAAPSGEGAGSK	1	Unmodified	1951.9487	0.9486993	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	46.35	45.76	2;3	2.1146E-120	40684	160511_QHF_FH_JSI9i_1	268.93	247.68			1.0219	0.96781	129.72	6	3	Median	1.1986	0.97764	NaN	1	0	Median	4.0065	4.7251	225.67	2	1	Median	1.0219	0.99871	11.622	2	2	Median	0.89892	0.9409	NaN	1	0	Median	963790000	298000000	665780000	101850000	48371000	53479000	561810000	91988000	469820000	205880000	101050000	104830000	94246000	56593000	37653000	4729	4372	4457	29191;29192;29193;29194;29195;29196	39992;39993;39994;39995;39996;39997;39998;39999;40000	40000			9	
ASAELALGENSEVLK	1	Unmodified	1529.7937	0.7937022	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.661	7		1							2	2	2	2	58.105	57.401	2;3	6.9648E-117	52370	160511_QHF_FH_JSI12i_1	276.2	250.82			1.0134	0.88192	11.141	7	1	Median	1.0416	0.86474	NaN	1	0	Median	0.72821	0.86591	0.5873	2	1	Median	0.98143	0.96022	12.028	2	0	Median	1.0238	1.0817	0.53736	2	0	Median	2024700000	1143100000	881660000	368840000	185030000	183810000	738520000	459920000	278600000	433530000	236880000	196640000	483830000	261220000	222610000	4730	773	4458	29197;29198;29199;29200;29201;29202;29203;29204	40001;40002;40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017;40018;40019;40020	40007			20	
ASAELIEEEVAK	1	Unmodified	1287.6558	0.65581174	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.05	4	1				1	2			1	3	1	3	54.657	51.197	2	1.4689E-31	46448	160511_QHF_FH_JSI12i_1	192.38	156.05			0.90865	1.0256	16.533	7	1	Median	1.2919	1.0514	NaN	1	0	Median	0.8858	1.0448	2.6184	2	0	Median	0.86976	0.83872	NaN	1	0	Median	0.92791	0.97698	22.929	3	1	Median	2144500000	1036300000	1108200000	386870000	155320000	231540000	573250000	295250000	278000000	618300000	301470000	316830000	566130000	284290000	281840000	4731	1012	4459	29205;29206;29207;29208;29209;29210;29211;29212	40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033	40024			13	
ASAETVDPASLWEY	0	Unmodified	1537.6937	0.69365381	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	90.81	90.317	2	4.8798E-10	82100	160511_QHF_FH_JSI12i_1	150.85	148.27			1.0456	1.0162	3.6983	5	2	Median	1.2501	1.0133	7.0722	2	2	Median	0.88426	1.029	NaN	1	0	Median	1.0456	1.0162	NaN	1	0	Median	0.93748	0.99817	NaN	1	0	Median	1541000000	759370000	781660000	473590000	225950000	247640000	372900000	202240000	170660000	357490000	169810000	187680000	337060000	161380000	175670000	4732	2751	4460	29213;29214;29215;29216;29217	40034;40035;40036;40037;40038;40039;40040;40041	40037			8	
ASAFALQEQPVVNAVIDDTTK	1	Unmodified	2216.1325	0.13247732	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	94.478	94.172	2;3	1.3655E-22	85438	160511_QHF_FH_JSI10i_1	171.67	143.81			0.95393	0.94147	5.0088	8	0	Median	1.053	0.8769	7.3589	2	0	Median	0.79306	0.94152	4.0217	2	0	Median	0.97829	0.95356	0.8474	2	0	Median	0.92976	0.95346	2.7465	2	0	Median	577250000	305930000	271320000	79413000	38939000	40475000	168460000	98954000	69505000	199530000	98890000	100640000	129850000	69144000	60702000	4733	1465	4461	29218;29219;29220;29221;29222;29223;29224;29225;29226;29227	40042;40043;40044;40045;40046;40047;40048;40049;40050;40051;40052;40053;40054;40055;40056;40057;40058;40059;40060;40061;40062;40063;40064;40065	40058			24	
ASAGHVAVSSPTPETGPLQR	0	Unmodified	1960.9967	0.99665254	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							2	1	2		37.383	36.62	3	2.3277E-14	32074	160511_QHF_FH_JSI11i_3	97.083	76.644			1.022	1.0871	25.19	4	3	Median	1.2669	1.089	39.194	2	2	Median	1.0172	1.2449	NaN	1	0	Median	1.0267	0.94933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165210000	80147000	85064000	71598000	30897000	40701000	44419000	24352000	20067000	49194000	24897000	24296000	0	0	0	4734	1542	4462	29228;29229;29230;29231;29232	40066;40067;40068;40069;40070	40066			5	
ASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK	1	Unmodified	3137.5993	0.5993065	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.762	75.762	3	4.1271E-06	67630	160511_QHF_FH_JSI11i_3	48.697	42.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4735	2836	4463	29233	40071	40071			1	
ASAGPQPLLVQSCK	1	Unmodified	1454.7551	0.75514863	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.765	40.129	2	0.00041857	36086	160511_QHF_FH_JSI11i_1	85.813	67.546			1.0366	1.019	25.08	4	1	Median	1.2667	1.0319	NaN	1	0	Median	0.84833	1.0063	NaN	1	1	Median	0.80142	0.77275	NaN	1	0	Median	1.405	1.4256	NaN	1	0	Median	437520000	235370000	202150000	52087000	27557000	24530000	111860000	63434000	48429000	157910000	94736000	63170000	115670000	49644000	66024000	4736	5616	4464	29234;29235;29236;29237	40072;40073;40074;40075	40072			4	
ASAGVAAGR	0	Unmodified	758.4035	0.40350064	5064	Q9NWA0	MED9	Mediator of RNA polymerase II transcription subunit 9	yes	yes	0	0	0	0	By MS/MS				2	0		2								2				0.77743	0.42184	2	0.024198	238	160511_QHF_FH_JSI9i_2	49.358	9.2554			1.1518	1.0015	38.793	2	1	Median	1.1518	1.0015	38.793	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59980000	29060000	30920000	59980000	29060000	30920000	0	0	0	0	0	0	0	0	0	4737	5064	4465	29238;29239	40076;40077	40077			2	
ASAISIK	1	Unmodified	688.41194	0.41194006	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	18.209	17.601	2	0.0098703	14451	160511_QHF_FH_JSI12i_2	77.282	21.606			0.77922	0.88044	9.4311	5	0	Median	1.0772	0.9123	NaN	1	0	Median	0.76583	0.94334	NaN	1	0	Median	0.77891	0.77281	2.0842	2	0	Median	0.77922	0.88044	NaN	1	0	Median	1076900000	583070000	493840000	214040000	100030000	114000000	187400000	107860000	79539000	412380000	232460000	179920000	263090000	142720000	120380000	4738	3793	4466	29240;29241;29242;29243;29244	40078;40079;40080;40081;40082	40078			5	
ASALEQFVNSVR	0	Acetyl (Protein N-term)	1361.6939	0.69392858	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1.33	0.471	2	1								1			2	102.05	101.89	2	3.727E-17	87808	160511_QHF_FH_JSI12i_2	204.64	176.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4739	5448	4467	29245;29246;29247	40083;40084;40085	40083			3	
ASALSEHISPVVVIPAEASSPDSEPVLEK	1	Unmodified	2957.5233	0.52334759	118	O00291	HIP1	Huntingtin-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	84.415	84.077	3	7.4392E-18	75139	160511_QHF_FH_JSI11i_3	99.219	93.789			1.0686	0.99694	16.711	4	0	Median	1.1182	0.95507	NaN	1	0	Median	0.60497	0.74236	NaN	1	0	Median	1.1424	1.073	NaN	1	0	Median	1.0211	1.0407	NaN	1	0	Median	154120000	74287000	79829000	21340000	10834000	10506000	23587000	14800000	8787100	58318000	27182000	31136000	50871000	21471000	29401000	4740	118	4468	29248;29249;29250;29251	40086;40087;40088;40089;40090;40091;40092;40093;40094;40095;40096;40097	40088			12	
ASANMDLMR	0	Unmodified	1007.4528	0.45283537	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.885	30.555	2	0.014415	27188	160511_QHF_FH_JSI10i_1	55.461	37.426			1.4001	1.6313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4001	1.6313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161780000	51143000	110640000	0	0	0	161780000	51143000	110640000	0	0	0	0	0	0	4741	1313	4469	29252	40098	40098			1	
ASAPAADPPR	0	Unmodified	951.47739	0.47739386	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		16.274	8.8948	2	0.044674	6956	160513_QHF_FH_JSI11Kac_3	42.864	20.627			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4742	4937	4470	29253	40099	40099			1	
ASAPAPGHH	0	Unmodified	843.39875	0.39874961	1877	P56378	MP68	6.8 kDa mitochondrial proteolipid	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.22	6.23	2	3	1					3		1	3	3	2	4.9012	1.5732	2	8.8974E-05	1610	160513_QHF_FH_JSI11Kac_5	114.59	88.759			1.1063	1.0815	12.335	9	1	Median	1.1223	0.95552	NaN	1	0	Median	0.7355	0.89203	21.048	3	0	Plateau	1.0379	1.0815	3.2422	3	1	Plateau	1.0804	1.1692	1.0508	2	0	Median	1612200000	816490000	795710000	326640000	154270000	172370000	405610000	224310000	181300000	798350000	397810000	400540000	81606000	40104000	41502000	4743	1877	4471	29254;29255;29256;29257;29258;29259;29260;29261;29262	40100;40101;40102;40103;40104	40104			3	
ASAPPPAPSEPPAAPR	0	Unmodified	1511.7732	0.77324153	3744	Q8TF64	GIPC3	PDZ domain-containing protein GIPC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.307	30.928	2	0.00034089	27769	160511_QHF_FH_JSI12i_1	64.55	53.399			1.1569	1.1235	9.1407	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82822	0.93699	NaN	1	0	Median	1.1569	1.1235	NaN	1	0	Median	0.94562	1.0071	NaN	1	0	Median	114730000	58904000	55828000	0	0	0	34537000	17431000	17105000	42757000	20463000	22294000	37439000	21010000	16428000	4744	3744	4472	29263;29264;29265;29266	40105;40106;40107;40108;40109;40110;40111;40112	40109			8	
ASASGAMAK	1	Acetyl (Protein N-term);Oxidation (M)	850.38547	0.38546731	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	1	1	0				By MS/MS	11	0				1									1	7.9172	0.38792	2	0.00038937	2330	160513_QHF_FH_JSI12Kacf_1	81.296	41.193			5.6095	5.9182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.6095	5.9182	NaN	1	1	Median	3438100	155680	3282400	0	0	0	0	0	0	0	0	0	3438100	155680	3282400	4745	5185	4473	29267	40113	40113		2598	1	
ASASGAMAK	1	Acetyl (Protein N-term)	834.39055	0.39055269	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	1	0	0		By MS/MS		By MS/MS	11	0				2							1		1	20.099	12.618	2	0.00082304	6149	160513_QHF_FH_JSI10Kac_1	37.812	30.14			0.76887	0.87209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76887	0.87209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3989000	2375000	1614000	0	0	0	3989000	2375000	1614000	0	0	0	0	0	0	4746	5185	4473	29268;29269	40114;40115;40116	40116			3	
ASASGSGAQVGGPISSGSSASSVTVTR	0	Unmodified	2364.1517	0.15170921	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	3.41	8	2				1				3	3	3	2	42.898	41.269	2;3	0	37279	160511_QHF_FH_JSI11i_1	449.02	436.19			1.1879	1.1026	5.6956	9	0	Median	1.3365	1.1029	0.27055	2	0	Median	0.89562	1.0511	6.7699	2	0	Median	1.2043	1.1653	2.7803	3	0	Plateau	1.0292	1.0863	0.23717	2	0	Median	3527200000	1718200000	1809000000	697760000	297800000	399960000	890970000	489170000	401800000	1014200000	470610000	543640000	924230000	460660000	463580000	4747	791	4474	29270;29271;29272;29273;29274;29275;29276;29277;29278;29279;29280	40117;40118;40119;40120;40121;40122;40123;40124;40125;40126;40127;40128;40129;40130;40131;40132;40133;40134	40118			18	
ASASSSAKK	2	Acetyl (K)	877.45051	0.45051041	2998	Q5VYM1	C9orf131	Uncharacterized protein C9orf131	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	2	1	7.9334	0.67431	2	0.0027458	3009	160513_QHF_FH_JSI10Kac_3	100.02	70.641			0.93035	1.0416	15.977	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89977	1.0541	1.6787	2	0	Median	1.148	1.1226	24.511	2	0	Median	0.8009	0.87536	NaN	1	0	Median	152870000	80161000	72711000	0	0	0	35549000	18053000	17496000	70030000	37098000	32931000	47294000	25010000	22284000	4748	2998	4475	29281;29282;29283;29284;29285	40135;40136;40137	40137	2738		3	
ASASTQPAALSAEQAK	1	Acetyl (Protein N-term)	1571.7791	0.77911477	4295	Q99622	C12orf57	Protein C10	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	1	2	40.916	38.596	2	1.1786E-10	34200	160511_QHF_FH_JSI9i_1	75.088	58.062			1.0167	1.0616	12.845	5	0	Median	1.0167	0.83748	NaN	1	0	Median	0.90063	1.0667	NaN	1	0	Median	1.1459	1.1363	NaN	1	0	Median	0.93409	0.97854	11.517	2	0	Median	376490000	192440000	184040000	71308000	37141000	34167000	95512000	54892000	40620000	111620000	52829000	58789000	98048000	47583000	50465000	4749	4295	4476	29286;29287;29288;29289;29290	40138;40139;40140;40141;40142;40143;40144;40145	40144			8	
ASASYHISNLLEK	1	Acetyl (Protein N-term)	1473.7464	0.74635808	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.41	3	3	2		1			4	1	4	4	2	4	71.96	65.962	2	1.2166E-99	57398	160511_QHF_FH_JSI12i_2	107.06	77.288			1.1918	0.58138	96.645	11	2	Plateau	1.3086	1.111	41.676	3	0	Median	0.066237	0.080643	204.81	3	2	Plateau	1.1641	1.148	NaN	1	0	Median	1.1337	1.2003	20.713	4	0	Median	1344500000	689270000	655200000	391550000	157670000	233870000	247840000	201200000	46639000	44274000	21280000	22994000	660810000	309120000	351690000	4750	3343	4477	29291;29292;29293;29294;29295;29296;29297;29298;29299;29300;29301;29302;29303;29304	40146;40147;40148;40149;40150;40151;40152;40153;40154;40155;40156;40157;40158;40159;40160;40161;40162	40148			17	
ASATIIEPAGESDNPLR	0	Unmodified	1739.869	0.86899241	4115	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		56.446	55.295	2	1.4928E-32	50113	160511_QHF_FH_JSI11i_1	150.68	101.18			1.3308	1.0853	NaN	1	1	Median	1.3308	1.0853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16174000	7268900	8905200	16174000	7268900	8905200	0	0	0	0	0	0	0	0	0	4751	4115	4478	29305;29306;29307;29308	40163;40164;40165;40166	40163			4	
ASAVALEVQR	0	Unmodified	1042.5771	0.57710791	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0		By MS/MS		By matching	2	0		2									1		1	31.368	30.24	2	0.055945	26565	160511_QHF_FH_JSI10i_2	46.64	20.747			0.75717	0.8703	3.545	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69943	0.84875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81969	0.89239	NaN	1	0	Median	46156000	25603000	20553000	0	0	0	20936000	11391000	9544900	0	0	0	25220000	14212000	11008000	4752	129	4479	29309;29310	40167	40167			0	
ASAVGER	0	Unmodified	688.3504	0.35040244	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			1.2013	0.9606	2	0.01639	808	160511_QHF_FH_JSI10i_1	63.148	12.841			0.89548	1.0501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89548	1.0501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	352730000	185930000	166800000	0	0	0	352730000	185930000	166800000	0	0	0	0	0	0	4753	874	4480	29311	40168	40168			1	
ASAVSELSPR	0	Unmodified	1015.5298	0.52982336	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		34.019	24.78	2	0.010117	15456	160513_QHF_FH_JSI11Kac_4	55.649	30.027			1.1927	1.1792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1927	1.1792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17601000	8251900	9348900	0	0	0	0	0	0	17601000	8251900	9348900	0	0	0	4754	5542	4481	29312	40169;40170	40170			2	
ASAVSPANLPAVLLQPR	0	Acetyl (Protein N-term)	1744.9836	0.98356866	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	101.77	101.64	2;3	2.6113E-14	89784	160511_QHF_FH_JSI9i_1	190.15	173.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4755	1743	4482	29313;29314;29315;29316;29317	40171;40172;40173;40174;40175	40174			5	
ASAVTAMGQLSSQGLHAPTSPEHAEAR	0	Unmodified	2703.3035	0.3034756	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			55.327	53.775	3	0.0014965	44959	160511_QHF_FH_JSI10i_3	41.423	38.325			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4756	3127	4483	29318	40176	40176			1	
ASAYEALEK	1	Unmodified	980.48148	0.48147619	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.439	25.891	2	0.0080396	23049	160511_QHF_FH_JSI12i_1	53.517	27.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4757	2707	4484	29319	40177	40177			1	
ASAYNNLK	1	Unmodified	879.44503	0.4450311	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	11.922	11.405	2	0.037188	8903	160511_QHF_FH_JSI12i_2	40.098	25.685			1.2037	1.1999	30.18	3	0	Median	1.9996	1.6939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2037	1.1999	NaN	1	0	Median	0.85258	0.92825	NaN	1	0	Median	86108000	38855000	47253000	29176000	11641000	17535000	0	0	0	31687000	13431000	18257000	25245000	13783000	11462000	4758	1190	4485	29320;29321;29322	40178	40178			1	
ASAYVFASPGCK	1	Unmodified	1256.586	0.58595803	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.39	1	3					2	2		1	3	3	1	45.658	39.285	2	0.00012446	33787	160511_QHF_FH_JSI11i_2	83.397	64.617			0.97377	1.0689	37.911	4	2	Median	NaN	NaN	NaN	0	0	Median	1.335	1.5501	48.326	2	2	Median	0.96937	0.95882	NaN	1	0	Median	0.9782	1.0373	NaN	1	0	Median	194600000	50966000	143640000	0	0	0	149970000	29386000	120580000	42437000	20326000	22111000	2198500	1254000	944530	4759	738	4486	29323;29324;29325;29326;29327;29328;29329;29330	40179;40180;40181;40182;40183;40184;40185;40186	40184			8	
ASCASIDIEDATQHLR	0	Acetyl (Protein N-term)	1827.8421	0.84212573	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			72.866	72.294	2	2.3491E-07	65519	160511_QHF_FH_JSI10i_1	122.42	112.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4760	3100	4487	29331;29332	40187;40188	40187			2	
ASCILQLVK	1	Unmodified	1030.5845	0.58450147	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.651	60.651	2	0.048089	54040	160511_QHF_FH_JSI11i_3	66.351	49.111			1.0331	0.93977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0331	0.93977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51871000	32090000	19781000	0	0	0	0	0	0	51871000	32090000	19781000	0	0	0	4761	179	4488	29333	40189	40189			0	
ASDAFHFFQSGQAK	1	Unmodified	1539.7106	0.71064128	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.66		4	9						4	4	6	3	4	55.714	52.275	2;3	1.5349E-14	44555	160511_QHF_FH_JSI12i_3	156.51	135.04			0.88967	0.91571	19.918	12	1	Median	1.2025	1.0136	13.328	2	0	Median	0.82146	0.93751	31.686	4	1	Median	0.8666	0.83307	12.405	3	0	Plateau	0.91101	0.91655	3.1719	3	0	Plateau	1758400000	883850000	874530000	52545000	21187000	31357000	278540000	134100000	144440000	540690000	278110000	262580000	886600000	450450000	436150000	4762	485	4489	29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346;29347;29348;29349;29350	40190;40191;40192;40193;40194;40195;40196;40197;40198;40199;40200;40201;40202;40203;40204;40205;40206;40207;40208;40209	40204			19	
ASDEVPLAPR	0	Unmodified	1053.5455	0.54547343	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	32.112	31.563	2	0.00031818	28369	160511_QHF_FH_JSI12i_1	78.264	51.88			0.9087	1.0252	5.6948	5	2	Median	1.3247	1.0769	NaN	1	0	Median	0.83778	0.99615	7.0802	2	2	Median	1.0603	1.0252	NaN	1	0	Median	0.9087	0.95402	NaN	1	0	Median	882030000	459320000	422710000	182530000	76705000	105830000	379560000	210100000	169460000	160190000	83447000	76741000	159750000	89065000	70685000	4763	3691	4490	29351;29352;29353;29354;29355	40210;40211;40212;40213;40214	40211			5	
ASDEVTR	0	Unmodified	776.36645	0.36644643	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	4.6609	1.596	2	0.0042303	2240	160511_QHF_FH_JSI11i_1	99.375	50.614			0.95369	1.0019	7.3482	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84824	1.0034	11.162	2	0	Median	1.0724	1.0572	7.5966	2	0	Median	0.95369	1.001	NaN	1	0	Median	1577000000	761060000	815910000	0	0	0	654050000	332410000	321640000	471920000	216760000	255160000	451000000	211890000	239110000	4764	1139	4491	29356;29357;29358;29359;29360	40215;40216;40217	40215			3	
ASDGFPVYQEK	1	Unmodified	1239.5772	0.57716749	3402	Q8IV38	ANKMY2	Ankyrin repeat and MYND domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.402	37.186	2	0.045914	32827	160511_QHF_FH_JSI9i_1	44.299	29.626			1.5629	1.322	NaN	1	1	Median	1.5629	1.322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32675000	11873000	20802000	32675000	11873000	20802000	0	0	0	0	0	0	0	0	0	4765	3402	4492	29361	40218	40218			1	
ASDGSFSLPLKPVISQPIHDSK	2	Unmodified	2322.222	0.22196103	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			8								3	3	2	71.611	70.993	3;4	6.6043E-16	63137	160511_QHF_FH_JSI11i_3	135.68	131.52			0.95686	0.99812	15.453	8	4	Median	NaN	NaN	NaN	0	0	Median	0.86185	1.0464	10.142	3	2	Plateau	1.007	0.95681	5.0203	3	2	Median	0.80189	0.8111	11.54	2	0	Median	762530000	405770000	356760000	0	0	0	117870000	60303000	57565000	352730000	179190000	173540000	291930000	166270000	125660000	4766	2157	4493	29362;29363;29364;29365;29366;29367;29368;29369	40219;40220;40221;40222;40223;40224;40225;40226;40227;40228;40229;40230;40231;40232	40220			14	
ASDLEDEESAAR	0	Unmodified	1291.5528	0.55280323	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.14	17.859	2	0.0003278	15303	160511_QHF_FH_JSI10i_1	72.434	61.604			1.3161	1.242	11.823	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86901	1.0184	NaN	1	0	Median	1.3161	1.242	NaN	1	0	Median	1.1851	1.2571	NaN	1	0	Median	161420000	83695000	77722000	0	0	0	47338000	27277000	20061000	64731000	29515000	35216000	49348000	26904000	22445000	4767	3341	4494	29370;29371;29372;29373	40233;40234;40235;40236;40237;40238;40239;40240	40239			8	
ASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASK	1	Unmodified	3395.4648	0.46484225	463	O60936	NOL3	Nucleolar protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		56.143	55.728	3	1.3498E-07	50448	160511_QHF_FH_JSI11i_1	58.498	56.48			1.3068	1.252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3068	1.252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25625000	9470400	16155000	0	0	0	0	0	0	25625000	9470400	16155000	0	0	0	4768	463	4495	29374;29375	40241;40242	40241			2	
ASDPGAASTK	1	Unmodified	903.42977	0.42977497	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.78	5.35	6				2	1					4	4	1	5.0577	2.4932	2	1.6999E-07	2594	160511_QHF_FH_JSI12i_1	118.71	70.863			0.93641	0.96921	28.635	9	4	Median	NaN	NaN	NaN	0	0	Median	0.91518	1.0677	18.925	4	2	Median	1.276	1.2086	39.033	4	2	Median	0.84029	0.88397	NaN	1	0	Median	1575900000	819960000	755950000	0	0	0	677720000	401250000	276470000	578480000	239540000	338940000	319710000	179170000	140540000	4769	3341	4496	29376;29377;29378;29379;29380;29381;29382;29383;29384	40243;40244;40245;40246;40247;40248;40249;40250;40251	40247			9	
ASDPGLPAEEPK	1	Unmodified	1209.5877	0.58773217	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	0					4						1	2	1	36.505	27.773	2	0.0044551	12426	160513_QHF_FH_JSI11Kac_2	66.435	46.648			1.0571	1.0208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0571	1.0208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1827800	822430	1005400	0	0	0	0	0	0	1827800	822430	1005400	0	0	0	4770	1296	4497	29385;29386;29387;29388	40252;40253;40254;40255	40252			4	
ASDSPIDLFYGDFFGDISEAVIQK	1	Unmodified	2633.2537	0.25371467	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	99.86	90.417	3	1.7607E-33	49745	160513_QHF_FH_JSI12Kac_6	147.35	139.45			0.69358	0.73912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69358	0.73912	NaN	1	0	Median	40097000	22475000	17622000	0	0	0	0	0	0	0	0	0	40097000	22475000	17622000	4771	5536	4498	29389	40256	40256			1	
ASDVHEVR	0	Unmodified	911.44609	0.44609374	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.28	2	9	4				5	9		4	8	8	9	5.4324	0.81281	2;3	7.725E-06	1724	160513_QHF_FH_JSI12Kac_5	140.09	104.21			0.86449	0.90184	11.963	24	5	Median	1.3353	1.1134	12.362	4	1	Median	0.76656	0.91887	12.957	6	1	Median	0.92329	0.90746	4.1125	7	1	Median	0.80474	0.86496	8.3616	7	2	Median	18299000000	9092000000	9207300000	3793800000	1719400000	2074400000	3885400000	2079800000	1805600000	6614200000	3291100000	3323200000	4005900000	2001700000	2004100000	4772	1055	4499	29390;29391;29392;29393;29394;29395;29396;29397;29398;29399;29400;29401;29402;29403;29404;29405;29406;29407;29408;29409;29410;29411;29412;29413;29414;29415;29416;29417;29418	40257;40258;40259;40260;40261;40262;40263;40264;40265;40266;40267;40268;40269;40270;40271;40272;40273;40274;40275;40276;40277;40278;40279;40280;40281;40282;40283;40284;40285;40286;40287;40288;40289;40290;40291;40292;40293	40285			37	
ASDVHEVRK	1	Unmodified	1039.5411	0.54105675	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.53		10	8					6	8	8	9	8	7	5.1714	1.1648	2;3	3.8075E-53	2295	160511_QHF_FH_JSI10i_3	226.04	163.94			1.0694	1.022	21.84	28	4	Median	1.3181	1.1073	12.239	8	1	Median	0.75609	0.90748	24.285	7	1	Median	1.0544	1.008	19.866	7	1	Median	1.056	1.0897	25.073	6	1	Median	83897000000	38278000000	45620000000	9379000000	3559300000	5819700000	19121000000	8954700000	10166000000	32661000000	14933000000	17728000000	22736000000	10830000000	11906000000	4773	1055	4500	29419;29420;29421;29422;29423;29424;29425;29426;29427;29428;29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450	40294;40295;40296;40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313;40314;40315;40316;40317;40318;40319;40320;40321;40322;40323;40324;40325;40326;40327;40328;40329;40330;40331;40332;40333;40334;40335;40336;40337;40338;40339;40340;40341;40342;40343;40344;40345;40346	40302			52	
ASEAASPLPDSPGDK	1	Unmodified	1440.6733	0.67325272	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		29.604	29.332	2	1.6548E-06	26030	160511_QHF_FH_JSI10i_1	127.17	113.82			0.5385	0.57819	22.098	2	1	Median	NaN	NaN	NaN	0	0	Median	0.56123	0.67598	NaN	1	1	Median	0.51669	0.49455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107260000	65443000	41817000	0	0	0	67087000	36661000	30426000	40172000	28782000	11391000	0	0	0	4774	3024	4501	29451;29452	40347;40348	40348			2	
ASEAEAPDK	1	Unmodified	916.41379	0.41379055	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					1	1	3	1	6.1303	4.6826	2	0.0049864	3536	160511_QHF_FH_JSI11i_1	65.224	26.433			1.2434	1.2615	13.373	6	2	Median	1.5547	1.2899	NaN	1	0	Median	1.0641	1.2338	NaN	1	0	Median	1.4923	1.4479	20.58	3	2	Plateau	1.1758	1.2267	NaN	1	0	Median	600270000	282530000	317740000	114810000	51034000	63777000	102010000	59069000	42939000	246880000	98740000	148140000	136570000	73683000	62887000	4775	5113	4502	29453;29454;29455;29456;29457;29458	40349;40350;40351;40352;40353;40354;40355;40356;40357	40350			9	
ASEAGEVPFNHEILR	0	Unmodified	1667.8267	0.82673367	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	52.012	51.036	2;3	7.7506E-06	43991	160511_QHF_FH_JSI11i_2	121.79	112.04			0.95296	1.0213	6.1241	8	0	Median	1.2128	1.016	4.9006	2	0	Median	0.89669	1.1108	5.7193	2	0	Median	1.0084	1.0121	1.6091	2	0	Median	0.88219	0.98012	5.4913	2	0	Median	1658100000	863900000	794210000	256140000	114870000	141270000	451280000	247410000	203870000	582520000	303280000	279240000	368170000	198330000	169830000	4776	3232	4503	29459;29460;29461;29462;29463;29464;29465;29466	40358;40359;40360;40361;40362;40363;40364;40365;40366;40367;40368;40369;40370	40367			13	
ASEAQPPVAR	0	Unmodified	1024.5302	0.53015772	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	12.058	11.803	2	0.00032192	9540	160511_QHF_FH_JSI10i_1	78.149	64.146			0.89143	1.0018	9.5896	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8617	1.0018	NaN	1	0	Median	1.0339	1.012	NaN	1	0	Median	1.1215	1.1885	NaN	1	0	Median	298290000	155520000	142770000	0	0	0	104450000	53731000	50716000	100230000	51950000	48282000	93606000	49840000	43766000	4777	2409	4504	29467;29468;29469	40371;40372	40372			1	
ASEEHLK	1	Unmodified	812.40283	0.40283194	1209	P22392	NME2	Nucleoside diphosphate kinase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.83	6.5	3	4	4				4	4	4	5	6	6	6	4.861	0.43622	2	1.1805E-05	2296	160511_QHF_FH_JSI11i_2	146.21	101.6			0.88833	0.94354	30.823	22	2	Median	1.042	0.85844	29.115	5	0	Median	0.86579	1.0295	14.004	6	1	Median	0.84368	0.86435	30.867	5	0	Median	0.80239	0.87095	42.571	6	1	Median	18340000000	9019100000	9320600000	3162100000	1469900000	1692200000	4420500000	2161200000	2259300000	6398200000	3006200000	3392000000	4358900000	2381700000	1977100000	4778	1209	4505	29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488;29489;29490;29491;29492	40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384;40385;40386;40387;40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398	40389			26	
ASEEHLKQHYIDLK	2	Acetyl (K)	1751.8842	0.88424855	1209	P22392	NME2	Nucleoside diphosphate kinase B	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	3	2	50.906	41.516	2;3;4	2.488E-24	22539	160513_QHF_FH_JSI11Kac_6	151.8	140.11			0.39621	0.42742	83.459	7	0	Median	0.96693	0.79965	NaN	1	0	Median	1.4061	1.6692	3.1317	2	0	Median	0.25662	0.2411	3.982	2	0	Median	0.36957	0.39694	10.464	2	0	Median	514850000	340120000	174730000	6749700	3262700	3487100	135290000	40869000	94419000	319190000	257150000	62039000	53632000	38842000	14789000	4779	1209	4506	29493;29494;29495;29496;29497;29498;29499;29500	40399;40400;40401;40402;40403;40404;40405;40406;40407;40408	40399	1084;1085		10	
ASEELQK	1	Acetyl (Protein N-term)	845.41306	0.41306227	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.08	4			4	2					1	3	2	4	22.391	17.767	2	1.8771E-17	7774	160513_QHF_FH_JSI12Kacf_1	99.919	22.171			0.89469	0.96321	6.6638	10	0	Median	1.1853	0.98181	NaN	1	0	Median	0.85274	1.0155	5.3795	3	0	Median	1.0051	0.97633	8.7547	2	0	Median	0.8805	0.93189	7.0618	4	0	Median	2256800000	1123500000	1133300000	504710000	213080000	291620000	591330000	310860000	280470000	599930000	290680000	309250000	560870000	308890000	251990000	4780	4837	4507	29501;29502;29503;29504;29505;29506;29507;29508;29509;29510	40409;40410;40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423;40424	40418			16	
ASEENLLSSSSVPSADRDSSPTTNSK	1	Unmodified	2665.2315	0.23147568	4949	Q9NRA8	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.929	43.402	3	2.4268E-07	39430	160511_QHF_FH_JSI12i_1	67.239	54.051			1.0696	1.1618	0.38192	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0284	1.1649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1124	1.1586	NaN	1	0	Median	58604000	37351000	21252000	0	0	0	23212000	15612000	7600200	0	0	0	35391000	21739000	13652000	4781	4949	4508	29511;29512;29513;29514	40425;40426;40427;40428	40426			4	
ASEGPAFFPGR	0	Unmodified	1134.5458	0.54580778	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	2	3	2	46.299	45.481	2	8.3547E-07	38958	160511_QHF_FH_JSI12i_2	113.18	94.072			1.0949	1.1697	10.117	7	1	Median	1.3869	1.1672	NaN	1	0	Median	1.0924	1.2997	5.1025	2	0	Median	1.1359	1.1063	7.8884	2	0	Median	1.0474	1.1088	13.583	2	1	Median	1161400000	518840000	642550000	217820000	86162000	131660000	214910000	84979000	129930000	387950000	181950000	206000000	340700000	165750000	174950000	4782	4982	4509	29515;29516;29517;29518;29519;29520;29521;29522	40429;40430;40431;40432;40433;40434;40435;40436;40437;40438	40431			9	
ASEIGEKYR	1	Acetyl (K)	1093.5404	0.54038805	5516	Q9Y2F5	ICE1	Little elongation complex subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	29.994	21.103	2	1.4802E-05	13031	160513_QHF_FH_JSI12Kac_4	115.71	45.89			14.619	14.387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.619	14.387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58051000	425640	57625000	0	0	0	18762000	0	18762000	16719000	425640	16293000	22570000	0	22570000	4783	5516	4510	29523;29524;29525	40439;40440;40441	40441	3467		3	
ASEIGEKYRK	2	Acetyl (K)	1221.6354	0.63535107	5516	Q9Y2F5	ICE1	Little elongation complex subunit 1	yes	yes	1	0	0	2		By matching	By matching	By MS/MS	15	0								3			1	1	1	24.22	14.98	3	0.016409	9462	160513_QHF_FH_JSI12Kac_5	50.284	28.652			1.0344	1.1455	21.058	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3072	1.5608	NaN	1	0	Median	1.0482	1.044	NaN	1	0	Median	1.0344	1.1455	NaN	1	0	Median	26297000	11480000	14817000	0	0	0	8443800	3666400	4777400	8785400	3733600	5051800	9067700	4079600	4988100	4784	5516	4511	29526;29527;29528	40442	40442	3467		1	
ASEIMVDDEELAQHPATTEDIR	0	Unmodified	2469.1329	0.13294761	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	59.181	58.486	3	1.447E-10	52758	160511_QHF_FH_JSI10i_1	110.9	99.256			1.0718	1.0496	26.318	5	1	Median	1.2344	1.0213	NaN	1	0	Median	1.1659	1.4085	38.392	2	1	Median	1.0718	1.0496	NaN	1	0	Median	0.96923	0.98095	NaN	1	0	Median	613170000	310070000	303100000	152750000	80011000	72739000	156450000	78995000	77457000	172560000	80025000	92535000	131400000	71039000	60366000	4785	3460	4512	29529;29530;29531;29532;29533	40443;40444;40445;40446;40447;40448	40446			6	
ASEKILQVR	1	Acetyl (K)	1084.6241	0.6240581	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	49.147	38.724	2	2.4259E-07	22338	160513_QHF_FH_JSI12Kac_4	142.92	48.62			0.71269	0.89008	7.6954	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69756	0.83693	NaN	1	0	Median	0.91358	0.89008	NaN	1	0	Median	0.8916	0.97524	NaN	1	0	Median	41692000	22292000	19399000	0	0	0	17396000	9669100	7726500	11063000	5559700	5502800	13233000	7063500	6170000	4786	2409	4513	29534;29535;29536	40449;40450;40451;40452	40452	2473		4	
ASELEPEVQAIDR	0	Acetyl (Protein N-term)	1497.7311	0.73110195	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	73.561	72.82	2	0.00059104	66235	160511_QHF_FH_JSI12i_1	69.721	50.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4787	3430	4514	29537;29538	40453;40454	40453			2	
ASELGHSLNENVLKPAQEK	2	Unmodified	2063.0647	0.064732107	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	40.744	40.352	3	8.94E-10	35332	160511_QHF_FH_JSI11i_3	122.44	107.51			0.99406	0.92517	25.985	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.48265	0.59296	NaN	1	1	Median	0.99406	0.92517	NaN	1	0	Median	0.89446	0.93473	NaN	1	0	Median	171370000	85979000	85388000	0	0	0	31357000	21652000	9705100	101990000	46112000	55882000	38017000	18215000	19802000	4788	3561	4515	29539;29540;29541;29542	40455;40456;40457;40458;40459	40456			4	
ASELHLLETPLVVK	1	Unmodified	1547.8923	0.89229404	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.44	75.598	3	0.00037085	65600	160511_QHF_FH_JSI12i_2	62.081	57.232			1.0393	1.1226	24.844	4	0	Linear	0.75148	0.66224	NaN	1	0	Median	0.75899	0.93297	NaN	1	0	Median	1.1397	1.1251	NaN	1	0	Median	0.98122	1.1181	NaN	1	0	Median	144160000	70816000	73347000	15479000	6136300	9343200	33627000	18859000	14767000	48172000	21916000	26256000	46885000	23904000	22981000	4789	3819	4516	29543;29544;29545;29546	40460;40461;40462;40463	40460			3	
ASELNPESIYSVFK	1	Unmodified	1582.7879	0.78788854	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	3	2	2	90.274	89.704	2	4.0783E-05	79665	160511_QHF_FH_JSI10i_2	78.692	64.534			1.0627	1.164	14.886	8	6	Median	1.4205	1.2003	7.1053	2	1	Median	0.85285	1.0088	30.635	2	1	Median	1.1162	1.1309	14.664	2	2	Median	1.0627	1.164	1.3825	2	2	Median	233360000	105280000	128080000	41832000	16197000	25635000	52293000	25466000	26827000	86147000	42310000	43837000	53091000	21309000	31782000	4790	3117	4517	29547;29548;29549;29550;29551;29552;29553;29554;29555	40464;40465;40466;40467;40468;40469;40470;40471;40472;40473	40473			10	
ASENAIVWK	1	Unmodified	1016.5291	0.52909508	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.67	0.471	2	4								1	2	2	1	36.992	36.257	2	0.00052543	32011	160511_QHF_FH_JSI10i_2	79.059	59.699			0.78718	0.8879	7.2059	6	0	Median	1.095	0.92499	NaN	1	0	Median	0.7549	0.91101	2.0775	2	0	Median	0.82186	0.81942	9.7934	2	0	Median	0.75608	0.84616	NaN	1	0	Median	873470000	463500000	409970000	94259000	45343000	48916000	296040000	180270000	115770000	364930000	168330000	196600000	118240000	69556000	48681000	4791	4017	4518	29556;29557;29558;29559;29560;29561	40474;40475	40475			2	
ASEQIYGTPSSSPYECLR	0	Unmodified	2043.9208	0.92076999	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		54.251	53.84	2	1.6312E-05	48759	160511_QHF_FH_JSI11i_1	92.265	78.008			1.2063	1.1557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2063	1.1557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33060000	10193000	22867000	0	0	0	0	0	0	33060000	10193000	22867000	0	0	0	4792	2516	4519	29562	40476	40476			1	
ASEQIYYENR	0	Unmodified	1271.5782	0.57823012	4757	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	22.914	22.518	2	0.0016876	19640	160511_QHF_FH_JSI10i_1	80.916	64.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4793	4757	4520	29563;29564	40477;40478	40478			2	
ASEQLKALGEK	2	Acetyl (K)	1214.6507	0.65066678	58	CON__P15497			yes	yes	1	0	0	1			By MS/MS		13	0						1						1		46.44	37.094	2	0.013129	20736	160513_QHF_FH_JSI11Kac_3	62.408	36.365		+	0.029627	0.028667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.029627	0.028667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1518700	1465500	53236	0	0	0	0	0	0	1518700	1465500	53236	0	0	0	4794	58	4521	29565	40479	40479	38		1	
ASESDAEIK	1	Unmodified	948.44001	0.4400053	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.6227	9.2572	2	0.00016333	6769	160511_QHF_FH_JSI9i_1	88.181	54.785			0.91026	0.90931	8.9676	4	0	Median	1.1394	0.95192	NaN	1	0	Median	0.73752	0.8686	NaN	1	0	Median	0.87024	0.82912	NaN	1	0	Median	0.95212	1.0121	NaN	1	0	Median	444360000	229670000	214690000	86196000	32931000	53266000	142510000	78401000	64106000	107310000	55640000	51667000	108350000	62694000	45654000	4795	2911	4522	29566;29567;29568;29569	40480;40481;40482	40482			3	
ASESSKPWPDATYGTGSASR	1	Unmodified	2053.9341	0.93411186	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							1	4	3	2	34.55	34.044	2;3	4.6677E-25	29471	160511_QHF_FH_JSI9i_2	173.09	148.5			0.99254	1.0395	20.82	9	3	Median	1.2222	1.0395	NaN	1	0	Median	0.94034	1.164	17.382	3	2	Plateau	1.0061	0.95265	19.946	3	1	Median	0.84622	0.88533	11.817	2	0	Median	1019100000	552430000	466710000	142650000	67461000	75189000	304050000	168600000	135460000	372470000	201170000	171310000	199960000	115200000	84761000	4796	5542	4523	29570;29571;29572;29573;29574;29575;29576;29577;29578;29579	40483;40484;40485;40486;40487;40488;40489;40490;40491;40492;40493;40494;40495;40496;40497;40498;40499;40500;40501;40502;40503	40493			21	
ASESSKPWPDATYGTGSASR	1	Acetyl (K)	2095.9447	0.94467655	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	1	2	59.324	49.967	2;3	0.0020334	25721	160513_QHF_FH_JSI10Kac_3	50.883	45.565			0.96903	1.0958	12.069	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0102	1.1934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92951	1.0061	NaN	1	0	Median	8457000	3466700	4990300	0	0	0	3793000	1657300	2135700	965420	965420	0	3698600	843930	2854700	4797	5542	4523	29580;29581;29582;29583	40504;40505;40506;40507;40508;40509;40510	40510	3475		7	
ASETGSDEAIK	1	Unmodified	1106.5091	0.5091475	1489	P39880	CUX1	Homeobox protein cut-like 1	yes	yes	0	0	0	0	By MS/MS		By matching		1	0	2									1		1		9.9916	9.5615	2	0.00073206	7047	160511_QHF_FH_JSI9i_1	68.847	40.15			1.1985	1.0548	10.794	2	0	Median	1.4215	1.1384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0104	0.97728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70041000	27401000	42639000	41495000	13730000	27765000	0	0	0	28545000	13671000	14874000	0	0	0	4798	1489	4524	29584;29585	40511;40512	40512			2	
ASETPPPVAQPKPEAPHPGLETTLQER	1	Unmodified	2876.4668	0.46683576	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		50.676	50.151	4	0.00022022	44346	160511_QHF_FH_JSI11i_3	47.018	40.585			1.0116	0.91552	5.4307	2	1	Median	1.0734	0.95136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95324	0.88103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	130690000	53710000	76979000	36638000	15604000	21034000	0	0	0	94050000	38105000	55945000	0	0	0	4799	3094	4525	29586;29587	40513;40514;40515	40513			3	
ASEVEEILDGNDEK	1	Unmodified	1546.6999	0.6998614	2310	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	58.086	57.434	2	2.8808E-05	51062	160511_QHF_FH_JSI9i_1	81.494	70.884			0.85042	0.92772	51.317	4	4	Median	2.5036	2.0418	NaN	1	1	Median	0.71285	0.82465	NaN	1	1	Median	0.63505	0.61097	NaN	1	1	Median	1.0145	1.0437	NaN	1	1	Median	213880000	95546000	118330000	48056000	13454000	34602000	38878000	17186000	21692000	46247000	21617000	24631000	80695000	43290000	37405000	4800	2310	4526	29588;29589;29590;29591;29592;29593	40516;40517;40518;40519;40520;40521;40522	40522			7	
ASEVEVK	1	Unmodified	760.39668	0.39668393	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.7348	8.6121	2	0.011362	6332	160511_QHF_FH_JSI11i_1	77.923	39.131			0.87053	0.83797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87053	0.83797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	331920000	189260000	142660000	0	0	0	0	0	0	331920000	189260000	142660000	0	0	0	4801	2804	4527	29594	40523	40523			1	
ASEVMGPVEAAPEYR	0	Unmodified	1604.7505	0.75045718	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.05	48.369	2	1.8878E-21	43515	160511_QHF_FH_JSI10i_1	176.51	163.33			0.86176	0.92759	12.97	4	1	Median	1.2804	1.0517	NaN	1	1	Median	0.7937	0.94632	NaN	1	0	Median	0.93564	0.90925	NaN	1	0	Median	0.76166	0.76966	NaN	1	0	Median	499310000	271990000	227330000	108620000	53481000	55138000	132160000	74472000	57691000	143790000	70204000	73586000	114740000	73829000	40912000	4802	3803	4528	29595;29596;29597;29598	40524;40525;40526;40527	40526			4	
ASEVQEFTAEFLEK	1	Unmodified	1626.7777	0.77771779	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.133	90.617	3	0.0023499	79687	160511_QHF_FH_JSI11i_2	48.823	36.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4803	3639	4529	29599	40528	40528			1	
ASEWVQQVSGLMDGK	1	Unmodified	1633.777	0.77700628	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.75	5	9	7							5	4	6	6	81.616	81.015	2;3	2.106E-15	71066	160511_QHF_FH_JSI11i_2	203.39	187.86			1.0593	1.0242	18.545	16	5	Median	1.2183	1.0395	19.791	3	1	Median	0.73351	0.89158	30.982	3	1	Plateau	1.0568	1.0143	20.582	5	1	Median	0.92633	0.97763	12.489	5	2	Median	2052700000	999150000	1053500000	236940000	110930000	126010000	488960000	261690000	227270000	683360000	294160000	389210000	643410000	332370000	311040000	4804	1664	4530	29600;29601;29602;29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616;29617;29618;29619;29620	40529;40530;40531;40532;40533;40534;40535;40536;40537;40538;40539;40540;40541;40542;40543;40544;40545;40546;40547;40548;40549;40550;40551;40552;40553;40554;40555;40556;40557;40558;40559;40560;40561	40551			33	
ASFANEDGQVSPGSLLLAGAIAGMPAASLVTPADVIK	1	Unmodified	3537.8389	0.83888484	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.77	102.78	3	2.9663E-18	89545	160511_QHF_FH_JSI12i_3	79.069	77.407			0.82482	0.83256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82482	0.83256	NaN	1	0	Median	35525000	21555000	13970000	0	0	0	0	0	0	0	0	0	35525000	21555000	13970000	4805	5345	4531	29621	40562	40562			1	
ASFAPISFAIK	1	Unmodified	1150.6386	0.63864553	2317	Q12872	SFSWAP	Splicing factor, suppressor of white-apricot homolog	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	82.018	81.077	2	7.5096E-06	70390	160511_QHF_FH_JSI12i_3	109.66	97.308			0.99442	1.0533	10.689	3	0	Plateau	1.231	1.0533	NaN	1	0	Median	1.066	1.2368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99442	1.0101	NaN	1	0	Median	72717000	35844000	36873000	8581300	3571200	5010200	13038000	6958800	6078700	0	0	0	51098000	25314000	25784000	4806	2317	4532	29622;29623;29624	40563;40564	40564			1	
ASFASASAEVGKK	2	Unmodified	1251.6459	0.64591575	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	22.796	22.461	2;3	0.00050989	18802	160511_QHF_FH_JSI11i_3	58.071	45.516			0.96074	0.95812	11.005	4	1	Median	1.4042	1.155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95677	0.89551	NaN	1	0	Median	0.95285	0.95812	2.0115	2	1	Median	292250000	123950000	168310000	28797000	13751000	15045000	0	0	0	117680000	43907000	73775000	145770000	66289000	79486000	4807	305	4533	29625;29626;29627;29628	40565;40566;40567;40568	40565			3	
ASFATPYGYAMETAK	1	Unmodified	1606.7337	0.73374448	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	62.799	62.098	2	2.9849E-21	54566	160511_QHF_FH_JSI9i_2	138.24	121.21			0.89789	0.94259	29.885	5	4	Median	NaN	NaN	NaN	0	0	Median	0.833	0.99699	7.9357	2	2	Median	1.2809	1.2486	40.028	2	1	Median	0.67116	0.73419	NaN	1	1	Median	299620000	134240000	165390000	0	0	0	125750000	60591000	65158000	136650000	55003000	81646000	37226000	18642000	18584000	4808	713	4534	29629;29630;29631;29632;29633;29634	40569;40570;40571;40572;40573;40574;40575	40573			7	
ASFENNCEIGCFAK	1	Unmodified	1645.6865	0.68647672	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.946	52.281	2	1.2421E-12	47512	160511_QHF_FH_JSI12i_1	116.74	107.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4809	1881	4535	29635	40576	40576			1	
ASFGWKR	1	Acetyl (K);Acetyl (Protein N-term)	934.4661	0.4661009	3121	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	yes	yes	1	1	0	1			By MS/MS	By MS/MS	14	0							2					1	1	70.11	59.289	2	0.016845	32211	160513_QHF_FH_JSI12Kac_4	47.849	36.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4810	3121	4536	29636;29637	40577;40578	40578	2774		2	
ASFHELYNMYK	1	Unmodified	1401.6387	0.63872189	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	53.67	53.551	3	0.0085251	46001	160511_QHF_FH_JSI12i_3	38.58	30.856			1.6432	1.6235	17.618	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9521	1.8389	NaN	1	0	Median	1.3833	1.4334	NaN	1	0	Median	66557000	28120000	38437000	0	0	0	0	0	0	27330000	9952200	17378000	39227000	18168000	21059000	4811	5420	4537	29638;29639	40579	40579			1	
ASFITANGVSLLK	1	Unmodified	1319.7449	0.74490152	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			4								2	1	1	76.678	75.909	2	0.00012652	65907	160511_QHF_FH_JSI12i_3	108.98	99.65			0.99497	1.0426	11.033	4	2	Median	NaN	NaN	NaN	0	0	Median	0.88985	1.0426	10.277	2	2	Median	1.0336	0.96294	NaN	1	0	Median	1.182	1.2038	NaN	1	0	Median	140130000	63864000	76265000	0	0	0	30012000	15265000	14746000	46697000	21470000	25227000	63420000	27128000	36292000	4812	4704	4538	29640;29641;29642;29643	40580;40581;40582	40582			3	
ASFITPVPGGVGPMTVAMLMQSTVESAK	1	Unmodified	2805.4115	0.41149441	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3	2	3	4	4	101.97	100.02	2;3	8.238E-49	51435	160513_QHF_FH_JSI11Kac_6	165.47	149.96			0.88434	0.91532	23.217	11	1	Median	1.3522	1.1501	14.585	2	0	Median	0.77902	0.88913	36.561	3	0	Median	0.92462	0.8605	15.079	3	0	Median	0.88434	0.9261	1.0063	3	1	Plateau	2202300000	1145100000	1057200000	136710000	64232000	72478000	344930000	206660000	138280000	1035000000	531210000	503770000	685710000	343010000	342700000	4813	1004	4539	29644;29645;29646;29647;29648;29649;29650;29651;29652;29653;29654;29655;29656	40583;40584;40585;40586;40587;40588;40589;40590;40591;40592;40593;40594;40595;40596;40597;40598;40599;40600;40601;40602;40603	40590			21	
ASFNHFDK	1	Unmodified	964.44028	0.44028008	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	3	1	2	16.868	16.315	2;3	0.0009909	13349	160511_QHF_FH_JSI11i_3	64.04	51.003			0.60198	0.62845	63.805	7	1	Median	0.60198	0.48049	NaN	1	0	Median	0.53666	0.62845	83.023	3	1	Median	1.7834	1.6796	NaN	1	0	Median	0.86299	0.8758	52.949	2	0	Median	3150600000	1461700000	1688900000	148900000	91535000	57362000	394520000	218870000	175650000	889760000	301500000	588250000	1717400000	849840000	867600000	4814	361	4540	29657;29658;29659;29660;29661;29662;29663	40604;40605;40606;40607;40608;40609;40610	40604			7	
ASFNHFDKDHGGALGPEEFK	2	Acetyl (K)	2244.0236	0.023595574	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									3		1	2		64.793	55.595	3;4	2.0696E-07	30155	160513_QHF_FH_JSI11Kac_6	90.308	86.815			0.41249	0.38159	52.791	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79007	0.95623	NaN	1	0	Median	0.40632	0.38325	0.61142	2	0	Median	NaN	NaN	NaN	0	0	Median	103340000	69089000	34247000	0	0	0	21492000	12451000	9041200	81844000	56638000	25206000	0	0	0	4815	361	4541	29664;29665;29666	40611;40612;40613;40614;40615	40615	179		5	
ASFNNPDR	0	Unmodified	919.41479	0.41479361	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			2	3	4	3	11.665	9.9147	2	0.00074165	5983	160513_QHF_FH_JSI10Kac_4	98.523	70.998			0.96607	0.98887	6.2968	12	4	Median	1.1793	0.98016	8.4212	2	0	Median	0.80978	0.97047	7.2148	3	2	Median	0.98935	0.98887	7.3046	4	1	Median	0.94708	1.0174	6.6107	3	1	Median	3016100000	1502200000	1513900000	579130000	241300000	337830000	669020000	374690000	294330000	933790000	442180000	491600000	834180000	444030000	390160000	4816	1831	4542	29667;29668;29669;29670;29671;29672;29673;29674;29675;29676;29677;29678	40616;40617;40618;40619;40620;40621;40622;40623;40624;40625;40626;40627;40628;40629;40630	40620			15	
ASFPGHNVK	1	Unmodified	955.48756	0.48756462	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	12.277	11.897	2;3	2.7836E-07	9050	160511_QHF_FH_JSI12i_3	117.1	56.739			0.83636	0.97997	30.893	8	3	Median	1.0273	0.84665	40.296	2	1	Median	0.81598	0.97997	11.906	2	0	Median	1.1434	1.0691	56.464	2	1	Median	0.8952	0.90646	33.47	2	1	Median	837410000	360110000	477300000	89525000	43709000	45816000	106030000	60590000	45435000	143980000	60188000	83787000	497880000	195630000	302260000	4817	408	4543	29679;29680;29681;29682;29683;29684;29685;29686;29687	40631;40632;40633;40634;40635;40636;40637	40637			7	
ASFPQGPIGGANR	0	Unmodified	1270.6418	0.64183343	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.06		4	3					4		3	3	2	3	43.081	38.673	2	3.2477E-15	33066	160511_QHF_FH_JSI12i_3	157.99	142.38			1.0026	0.98215	9.7627	11	0	Median	1.1881	0.99292	3.4145	3	0	Plateau	0.83676	0.97138	14.57	3	0	Median	1.0364	1.027	6.3151	2	0	Median	0.988	1.0974	12.144	3	0	Median	1132900000	545350000	587520000	305220000	144760000	160470000	334520000	160280000	174240000	150730000	72361000	78367000	342400000	167950000	174450000	4818	548	4544	29688;29689;29690;29691;29692;29693;29694;29695;29696;29697;29698	40638;40639;40640;40641;40642;40643;40644;40645;40646;40647;40648;40649;40650;40651;40652;40653;40654;40655;40656	40656			19	
ASFQYLIR	0	Unmodified	996.53927	0.53926584	5815				yes	yes	0	0	0	0	By matching			By MS/MS	3	0			3							1			2	36.949	36.361	3	0.058949	30840	160511_QHF_FH_JSI12i_3	13.037	4.6964	+		1.3877	1.3674	69.764	3	0	Plateau	5.3536	4.5779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3877	1.3674	0	2	0	Median	95051000	33227000	61825000	8329700	1245000	7084700	0	0	0	0	0	0	86722000	31982000	54740000	4819	5815	4545	29699;29700;29701	40657	40657			1	
ASFSHDFTYLVSGSEDK	1	Unmodified	1888.8479	0.84792262	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	4	4	4	5	68.953	66.041	2;3	1.9604E-52	57372	160511_QHF_FH_JSI12i_3	259.7	236.78			0.90252	0.95391	12.291	14	1	Median	1.1713	1.0126	20.487	3	0	Median	0.89393	1.1044	7.1506	3	1	Median	0.94628	0.91984	6.7718	4	0	Median	0.89501	0.93968	7.2355	4	0	Median	1248400000	627240000	621150000	172140000	75532000	96611000	216570000	121500000	95066000	398730000	202030000	196700000	460950000	228170000	232780000	4820	2902	4546	29702;29703;29704;29705;29706;29707;29708;29709;29710;29711;29712;29713;29714;29715;29716;29717;29718	40658;40659;40660;40661;40662;40663;40664;40665;40666;40667;40668;40669;40670;40671;40672;40673;40674;40675;40676;40677;40678;40679;40680;40681;40682;40683	40681			26	
ASFVTEVLAHSGR	0	Acetyl (Protein N-term)	1414.7205	0.72047768	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	98.632	98.534	2	7.2111E-07	86421	160511_QHF_FH_JSI11i_2	121.36	96.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4821	316	4547	29719;29720;29721;29722;29723	40684;40685;40686;40687;40688;40689	40687			6	
ASFWLGELQR	0	Unmodified	1205.6193	0.61930707	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		75.023	74.061	2	1.9315E-09	66039	160511_QHF_FH_JSI11i_3	131.62	112.51			1.1258	1.0677	10.364	3	0	Median	1.5067	1.2654	NaN	1	0	Median	0.90365	1.0488	NaN	1	0	Median	1.1258	1.0677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205100000	94461000	110640000	34029000	12582000	21447000	45317000	20795000	24522000	125750000	61084000	64668000	0	0	0	4822	5666	4548	29724;29725;29726	40690;40691;40692;40693;40694	40691			5	
ASGADSKGDDLSTAILK	2	Acetyl (Protein N-term)	1689.8421	0.84210896	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.3	4.61	8				1	1				2	2	3	3	60.193	57.766	2;3	1.8202E-11	52327	160511_QHF_FH_JSI12i_1	88.992	76.114			0.94808	0.96268	12.544	9	0	Median	1.211	1.0087	10.671	2	0	Median	0.80604	0.94159	4.3662	2	0	Median	0.94892	0.91679	18.172	3	0	Median	0.93178	0.98421	1.5384	2	0	Median	6418700000	3437200000	2981600000	1988900000	937600000	1051300000	1627100000	982580000	644470000	1428800000	756660000	672160000	1373900000	760320000	613630000	4823	1846	4549	29727;29728;29729;29730;29731;29732;29733;29734;29735;29736	40695;40696;40697;40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709	40702			15	
ASGAGGVGGGGGGK	1	Acetyl (Protein N-term)	1029.4839	0.4839358	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		4.67	4.53	3		1	2						1	2	3		12.94	5.4647	2	3.4358E-08	7847	160511_QHF_FH_JSI10i_1	98.257	82.876			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2015500	2015500	0	0	0	0	0	0	0	2015500	2015500	0	0	0	0	4824	1684	4550	29737;29738;29739;29740;29741;29742	40710;40711;40712;40713;40714;40715	40712			6	
ASGANYSFHK	1	Unmodified	1080.4989	0.49885759	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.11		2	7						4	5	3	2	3	15.72	12.992	2;3	2.0512E-09	10610	160511_QHF_FH_JSI11i_3	130.98	107.19			0.9112	0.90492	18.597	13	0	Median	1.169	1.0118	16.738	5	0	Median	0.97502	1.1375	13.23	3	0	Plateau	0.84142	0.81723	1.1762	2	0	Median	0.72058	0.72787	11.591	3	0	Plateau	1958600000	969370000	989180000	392030000	157440000	234590000	408130000	178840000	229280000	177810000	89748000	88067000	980590000	543340000	437250000	4825	5346	4551	29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753;29754;29755	40716;40717;40718;40719;40720;40721;40722;40723;40724;40725;40726;40727;40728;40729;40730	40716			14	
ASGAQLEAK	1	Unmodified	873.4556	0.45559579	4469	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	2	2	9.7406	7.4123	2	0.00018801	6110	160511_QHF_FH_JSI9i_1	96.143	51.062			1.0933	1.0649	17.897	7	1	Median	1.1432	0.9304	NaN	1	0	Median	0.94778	1.1563	22.341	2	1	Median	1.0936	1.0613	0.47295	2	0	Median	1.2362	1.3184	21.946	2	0	Median	2568400000	1302200000	1266200000	661540000	359210000	302330000	717880000	353850000	364020000	606440000	320650000	285790000	582540000	268460000	314080000	4826	4469	4552	29756;29757;29758;29759;29760;29761;29762	40731;40732;40733;40734;40735;40736;40737	40735			7	
ASGCEGEDVVTLLK	1	Unmodified	1476.713	0.71300904	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	62.692	62.203	2	1.503E-05	56400	160511_QHF_FH_JSI11i_1	84.718	71.762			0.68654	0.6542	30.735	3	3	Median	NaN	NaN	NaN	0	0	Median	0.57518	0.65015	NaN	1	1	Median	0.68654	0.6542	NaN	1	1	Median	1.088	1.1106	NaN	1	1	Median	82802000	47543000	35259000	0	0	0	20736000	12755000	7981700	30194000	20612000	9582800	31871000	14177000	17694000	4827	1785	4553	29763;29764;29765;29766	40738;40739;40740;40741	40739			4	
ASGDFQTTK	1	Unmodified	953.44543	0.44542503	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.4245	9.3019	2	0.044313	7014	160511_QHF_FH_JSI11i_1	45.368	7.6405			0.51323	0.49731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51323	0.49731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76791000	47774000	29017000	0	0	0	0	0	0	76791000	47774000	29017000	0	0	0	4828	859	4554	29767	40742	40742			1	
ASGDSARPVLLQVAESAYR	0	Unmodified	1989.028	0.02795267	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			72.489	71.352	3	5.3334E-08	58599	160511_QHF_FH_JSI9i_3	104.89	89.972			1.1526	0.98977	14.313	4	1	Linear	1.4053	1.1707	20.902	2	1	Median	0.97154	1.1754	13.325	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	372320000	166390000	205930000	219190000	95890000	123300000	153130000	70503000	82630000	0	0	0	0	0	0	4829	5345	4555	29768;29769;29770;29771	40743;40744;40745;40746;40747	40744			5	
ASGEGMAGDAAGETEGSMER	0	Unmodified	1911.7575	0.75746941	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	31.414	30.69	2	1.0985E-32	27480	160511_QHF_FH_JSI12i_1	185.12	185.12			1.0124	1.181	18.165	3	1	Median	1.7274	1.3833	NaN	1	1	Median	1.0124	1.181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90774	0.96287	NaN	1	0	Median	154380000	77455000	76928000	41493000	15962000	25532000	72292000	39236000	33055000	0	0	0	40598000	22257000	18341000	4830	681	4556	29772;29773;29774	40748;40749;40750;40751;40752	40748			5	
ASGEHSPGSGAAR	0	Acetyl (Protein N-term)	1224.5483	0.54832698	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.32	4	3				3				1	3	3	3	7.1754	4.7383	2	1.6157E-24	4211	160511_QHF_FH_JSI9i_1	220.82	204.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4831	4715	4557	29775;29776;29777;29778;29779;29780;29781;29782;29783;29784	40753;40754;40755;40756;40757;40758;40759;40760;40761;40762	40758			10	
ASGEMASAQYITAALR	0	Unmodified	1638.8036	0.80355538	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.6	3	6	1							2	4	3	1	70.814	70.177	2;3	4.5053E-159	61430	160511_QHF_FH_JSI11i_2	297.64	257.15			0.98129	1.0146	14.088	8	0	Median	1.3287	1.1395	8.306	2	0	Median	0.76833	0.95368	20.44	3	0	Median	1.0979	1.0886	8.9534	3	0	Plateau	NaN	NaN	NaN	0	0	Median	742520000	365180000	377340000	153760000	65626000	88134000	173770000	94301000	79472000	414990000	205260000	209730000	0	0	0	4832	1824	4558	29785;29786;29787;29788;29789;29790;29791;29792;29793;29794	40763;40764;40765;40766;40767;40768;40769;40770;40771;40772;40773	40768			7	
ASGFVFTR	0	Unmodified	883.4552	0.45520186	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.982	39.461	2	0.008768	32262	160511_QHF_FH_JSI9i_3	56.659	28.236			0.98933	0.96596	1.4731	2	0	Median	1.1825	0.97607	NaN	1	0	Median	0.82768	0.95595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141620000	65986000	75630000	70689000	27905000	42783000	70927000	38081000	32846000	0	0	0	0	0	0	4833	2540	4559	29795;29796	40774	40774			1	
ASGGLPQFGDEYDFYR	0	Unmodified	1820.8006	0.8005785	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By matching			1	0	2									1	1			78.005	77.488	2	0.023061	69048	160511_QHF_FH_JSI9i_1	55.452	47.527			1.2058	1.1983	13.28	2	0	Median	1.5419	1.3163	NaN	1	0	Median	0.94289	1.0909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70441000	29225000	41216000	31731000	12048000	19682000	38710000	17176000	21534000	0	0	0	0	0	0	4834	2175	4560	29797;29798	40775	40775			0	
ASGGQDGAASSAGAAK	1	Unmodified	1304.5957	0.5956711	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.8585	5.252	2	4.3545E-19	3106	160511_QHF_FH_JSI9i_1	130.2	107.46			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4835	405	4561	29799	40776	40776			1	
ASGGSGGVSVPALWSEVNR	0	Acetyl (Protein N-term)	1870.9173	0.91733959	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	93.511	93.134	2	3.4753E-06	84642	160511_QHF_FH_JSI11i_1	126.32	114.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4836	602	4562	29800;29801;29802;29803;29804	40777;40778;40779;40780;40781;40782	40778			6	
ASGGSLQGHDAVLR	0	Unmodified	1366.6953	0.69532556	3638	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	20.38	19.947	3	0.00070724	16777	160511_QHF_FH_JSI11i_3	56.286	49.626			0.96648	1.038	15.495	4	1	Median	1.4419	1.2143	NaN	1	0	Median	0.90607	1.1098	NaN	1	1	Median	1.0309	0.97087	NaN	1	0	Median	0.83193	0.85222	NaN	1	0	Median	192160000	89465000	102690000	34570000	16062000	18508000	33180000	17967000	15212000	57922000	21902000	36020000	66483000	33533000	32950000	4837	3638	4563	29805;29806;29807;29808	40783;40784;40785	40783			3	
ASGGTSEFITGK	1	Unmodified	1153.5615	0.56151742	149	O00534	VWA5A	von Willebrand factor A domain-containing protein 5A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	27.565	27.212	2	0.007857	24098	160511_QHF_FH_JSI10i_1	50.648	36.133			0.58132	0.62251	38.308	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.39999	0.47213	NaN	1	0	Median	0.84484	0.82081	NaN	1	0	Median	0.97941	0.98532	NaN	1	0	Median	113820000	65553000	48268000	0	0	0	46091000	25652000	20438000	42840000	24693000	18147000	24889000	15207000	9682600	4838	149	4564	29809;29810;29811	40786	40786			1	
ASGKFELLDR	1	Acetyl (K)	1176.6139	0.61388734	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	1	0	0	1			By MS/MS		15	0								1				1		70.735	59.901	2	0.013415	32183	160513_QHF_FH_JSI11Kac_5	64.439	34.966			0.05573	0.054879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.05573	0.054879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4331400	4141200	190220	0	0	0	0	0	0	4331400	4141200	190220	0	0	0	4839	1736;1737	4565	29812	40787	40787	1750		1	
ASGLAAGK	1	Unmodified	673.37589	0.3758889	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.43	4	4	3				1			3	3	3	3	6.7399	5.7723	2	0.0032965	3890	160511_QHF_FH_JSI9i_1	73.616	38.724			0.95968	0.97449	14.435	12	0	Median	1.1595	0.96382	7.531	3	0	Median	0.93304	1.1178	14.336	3	0	Median	0.86269	0.83669	9.151	3	0	Plateau	0.72297	0.77164	16.926	3	0	Plateau	3598200000	1844800000	1753400000	737980000	347850000	390130000	882530000	464680000	417850000	922520000	446620000	475900000	1055100000	585630000	469500000	4840	1205	4566	29813;29814;29815;29816;29817;29818;29819;29820;29821;29822;29823;29824	40788;40789;40790;40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802;40803	40798			16	
ASGLAAGKGVIVAK	2	Acetyl (K)	1282.7609	0.76088593	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0.679						3	7	3			5	4	4	61.019	50.55	2;3	1.8273E-24	28527	160513_QHF_FH_JSI11Kac_4	159.99	133.28			0.84661	0.93993	74.739	10	1	Median	NaN	NaN	NaN	0	0	Median	0.54177	0.64969	45.952	3	0	Plateau	0.62052	0.61476	145.21	3	1	Plateau	0.84661	0.93993	15.056	4	0	Median	295950000	178180000	117780000	0	0	0	116600000	73040000	43563000	108490000	69862000	38631000	70856000	35274000	35582000	4841	1205	4567	29825;29826;29827;29828;29829;29830;29831;29832;29833;29834;29835;29836;29837	40804;40805;40806;40807;40808;40809;40810;40811;40812;40813;40814;40815;40816;40817;40818;40819;40820;40821	40810	1071		18	
ASGLGEAGMSAWLR	0	Unmodified	1404.682	0.68198369	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	70.649	70.451	2	0.00020781	60982	160511_QHF_FH_JSI12i_3	107.09	95.222			0.96705	0.9713	11.92	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86076	0.79111	NaN	1	1	Median	0.96465	0.96748	3.7591	2	2	Median	233990000	115310000	118680000	0	0	0	0	0	0	47054000	23744000	23310000	186930000	91564000	95367000	4842	280	4568	29838;29839;29840	40822;40823;40824	40823			3	
ASGLVPNVVVLVATVR	0	Unmodified	1592.9614	0.96137665	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.591	86.871	3	0.040554	49767	160513_QHF_FH_JSI10Kac_6	39.338	27.546			0.76132	0.90492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76132	0.90492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22888000	11748000	11140000	0	0	0	22888000	11748000	11140000	0	0	0	0	0	0	4843	3141	4569	29841	40825	40825			0	
ASGNLETK	1	Unmodified	818.4134	0.41339662	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.2	1					3					1	1	2	6.2227	0.68568	2	0.0019631	2343	160513_QHF_FH_JSI11Kac_3	94.309	52.657			0.70297	0.57627	15.991	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.70637	0.83931	NaN	1	0	Median	0.69958	0.69287	NaN	1	0	Median	0.63895	0.69427	22.254	2	1	Median	1782400000	1183400000	599040000	0	0	0	14184000	7527100	6657200	35531000	19886000	15645000	1732700000	1155900000	576730000	4844	5499	4570	29842;29843;29844;29845	40826;40827;40828;40829	40827			4	
ASGNLETKYK	2	Acetyl (K)	1151.5823	0.58225287	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.293	23.108	2	0.0015953	14554	160513_QHF_FH_JSI11Kac_4	84.31	59.184			0.25935	0.25767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25935	0.25767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29116000	24325000	4790800	0	0	0	0	0	0	29116000	24325000	4790800	0	0	0	4845	5499	4571	29846	40830	40830	3462		1	
ASGNYATVISHNPETK	1	Unmodified	1687.8166	0.81656291	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.42	4	9	10				3	10	5	9	9	11	12	34.122	29.852	2;3	5.5012E-98	25129	160511_QHF_FH_JSI12i_3	263.59	242.81			0.96387	0.97869	15.852	35	5	Median	1.152	0.99072	25.524	7	1	Median	0.93544	1.1332	12.257	8	0	Median	0.94037	0.92114	10.209	10	2	Median	0.86802	0.93885	8.349	10	2	Median	30467000000	14735000000	15731000000	2087100000	894530000	1192600000	2874200000	1612500000	1261700000	12454000000	5925800000	6528000000	13051000000	6302400000	6749100000	4846	2039	4572	29847;29848;29849;29850;29851;29852;29853;29854;29855;29856;29857;29858;29859;29860;29861;29862;29863;29864;29865;29866;29867;29868;29869;29870;29871;29872;29873;29874;29875;29876;29877;29878;29879;29880;29881;29882;29883;29884;29885;29886;29887	40831;40832;40833;40834;40835;40836;40837;40838;40839;40840;40841;40842;40843;40844;40845;40846;40847;40848;40849;40850;40851;40852;40853;40854;40855;40856;40857;40858;40859;40860;40861;40862;40863;40864;40865;40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925	40916			95	
ASGNYATVISHNPETKK	2	Unmodified	1815.9115	0.91152593	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.39		5	11					2	8	8	10	5	3	28.224	24.226	2;3;4	5.5E-23	19962	160511_QHF_FH_JSI10i_3	176.94	166.45			0.91785	0.91426	26.771	26	4	Median	1.0933	0.91426	21.64	8	0	Median	0.77268	0.88096	36.379	10	4	Median	0.8965	0.8768	16.607	5	0	Median	0.68291	0.69025	20.217	3	0	Plateau	7742500000	3550700000	4191900000	2173900000	735440000	1438500000	2590600000	1381600000	1209000000	2799400000	1337700000	1461700000	178640000	95876000	82763000	4847	2039	4573	29888;29889;29890;29891;29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903;29904;29905;29906;29907;29908;29909;29910;29911;29912;29913	40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948;40949;40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981;40982;40983;40984	40938			59	
ASGPGLNTTGVPASLPVEFTIDAK	1	Unmodified	2341.2165	0.2165413	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.854	8	3	4							3	4	3	5	97.645	97.466	2;3	4.3925E-75	88017	160511_QHF_FH_JSI10i_1	226.74	200.62			0.84777	0.93817	13.78	14	1	Median	1.1276	0.93094	21.88	3	0	Median	0.78311	0.94301	12.316	4	1	Median	1.0391	1.0151	14.617	3	0	Plateau	1.0395	1.0407	11.353	4	0	Linear	2276300000	1181000000	1095300000	203600000	86525000	117080000	830720000	471280000	359430000	488060000	246860000	241200000	753910000	376330000	377580000	4848	1192	4574	29914;29915;29916;29917;29918;29919;29920;29921;29922;29923;29924;29925;29926;29927;29928	40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002;41003;41004;41005;41006;41007;41008;41009;41010;41011;41012;41013;41014;41015;41016;41017;41018;41019	41010			35	
ASGPPVSELITK	1	Unmodified	1197.6605	0.66050319	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.97	5.93	4	4	4		2	4	6	4	1	6	8	8	7	57.413	50.941	2	3.4032E-31	28266	160513_QHF_FH_JSI11Kac_3	185.18	157.17			1.0884	1.0344	23.743	28	1	Median	1.1482	0.97398	8.227	6	0	Median	0.86041	1.001	31.309	8	0	Median	1.2336	1.1941	26.702	8	1	Median	1.0039	1.0809	18.039	6	0	Median	38406000000	17628000000	20778000000	10350000000	4732900000	5617100000	9198000000	4897400000	4300600000	9810000000	3762200000	6047900000	9047600000	4235500000	4812100000	4849	969;1099;1098	4575	29929;29930;29931;29932;29933;29934;29935;29936;29937;29938;29939;29940;29941;29942;29943;29944;29945;29946;29947;29948;29949;29950;29951;29952;29953;29954;29955;29956;29957	41020;41021;41022;41023;41024;41025;41026;41027;41028;41029;41030;41031;41032;41033;41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070;41071;41072;41073;41074;41075;41076;41077;41078;41079;41080;41081;41082;41083;41084;41085	41043			66	
ASGPPVSELITKAVAASK	2	Unmodified	1724.9672	0.96724989	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	1		By MS/MS			3	0			1								1			80.412	79.062	3	0.00021628	66264	160511_QHF_FH_JSI10i_3	74.732	65.45			0.68853	0.77418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68853	0.77418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31098000	19010000	12088000	0	0	0	31098000	19010000	12088000	0	0	0	0	0	0	4850	969;1099;1098	4576	29958	41086	41086			1	
ASGQAFELILSPR	0	Unmodified	1387.746	0.74596415	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	3.31		8	7						1	3	3	5	5	76.667	75.315	2;3	1.2232E-30	65784	160511_QHF_FH_JSI12i_3	188.91	164.88			0.73307	0.83582	17.951	11	5	Median	1.0879	0.9305	15.176	2	1	Median	0.65661	0.81117	7.174	2	1	Median	0.73307	0.70081	29.496	3	1	Median	0.78831	0.852	16.244	4	2	Median	633940000	340530000	293410000	66076000	29687000	36390000	72960000	43492000	29468000	224560000	123490000	101070000	270350000	143870000	126480000	4851	1105	4577	29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970;29971;29972;29973;29974	41087;41088;41089;41090;41091;41092;41093;41094;41095;41096;41097;41098;41099;41100;41101;41102;41103;41104	41103			17	
ASGQPAGPDNK	1	Unmodified	1040.4887	0.48868683	809	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	5.8448	2.565	2	5.057E-18	3331	160511_QHF_FH_JSI12i_1	160.18	137.11			0.99583	1.0308	6.5701	7	0	Median	1.1405	0.94125	NaN	1	0	Median	0.84847	0.97882	11.068	2	0	Median	1.0429	1.0052	3.556	2	0	Median	1.0105	1.0604	3.0837	2	0	Median	899240000	452510000	446720000	189180000	79499000	109680000	252740000	136150000	116590000	242770000	128320000	114450000	214550000	108540000	106010000	4852	809	4578	29975;29976;29977;29978;29979;29980;29981	41105;41106;41107;41108;41109;41110;41111;41112;41113;41114;41115;41116;41117	41110			12	
ASGRTPEAVQK	1	Unmodified	1142.6044	0.60438529	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			6.5161	6.0198	2	0.0051101	4048	160511_QHF_FH_JSI10i_3	90.108	40.295			0.8752	1.0268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8752	1.0268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26973000	10789000	16183000	0	0	0	26973000	10789000	16183000	0	0	0	0	0	0	4853	1650	4579	29982	41118	41118			1	
ASGSGDSVTRR	0	Acetyl (Protein N-term)	1133.5425	0.54251332	3888	Q92797	SYMPK	Symplekin	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	7.9469	7.5598	2	7.6939E-05	5081	160511_QHF_FH_JSI9i_1	90.906	61.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4854	3888	4580	29983;29984;29985	41119;41120;41121	41121			3	
ASGSGGGSAALGPSGFGPSGGSGTK	1	Unmodified	2006.9294	0.92936084	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	38.709	38.093	2	1.3811E-28	34564	160511_QHF_FH_JSI12i_1	157.91	145.14			0.93427	0.76083	31.118	5	4	Median	0.93427	0.76083	NaN	1	1	Median	0.42232	0.50301	NaN	1	1	Median	1.1235	1.0739	NaN	1	0	Median	0.85612	0.88752	24.757	2	2	Median	126840000	79707000	47129000	13854000	7875500	5978800	37251000	28952000	8299300	30764000	17797000	12966000	44967000	25082000	19885000	4855	1259	4581	29986;29987;29988;29989;29990;29991	41122;41123;41124;41125;41126;41127;41128;41129	41124			8	
ASGSGTKNLDFR	1	Acetyl (K);Acetyl (Protein N-term)	1335.6419	0.64189301	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	1	1	0	1			By MS/MS	By MS/MS	12	0					2							1	1	59.151	49.711	2	3.0425E-37	20223	160513_QHF_FH_JSI11Kac_2	208.33	174.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4856	4182	4582	29992;29993	41130;41131	41130	3070		2	
ASGTLPSQPK	1	Unmodified	984.52401	0.52400971	4949	Q9NRA8	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	14.646	14.1	2	0.0019041	11880	160511_QHF_FH_JSI12i_1	63.076	46.299			0.93672	0.95749	7.3604	3	0	Median	1.2931	1.078	NaN	1	0	Median	0.83177	0.94195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93672	0.95749	NaN	1	0	Median	77839000	36505000	41334000	23245000	9276600	13968000	23144000	9655500	13489000	0	0	0	31450000	17573000	13877000	4857	4949	4583	29994;29995;29996	41132;41133	41132			2	
ASGTLREYK	1	Unmodified	1023.5349	0.53490874	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			9.3705	8.7823	2	0.025462	6616	160511_QHF_FH_JSI10i_3	61.962	18.716			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4858	2190	4584	29997	41134	41134			1	
ASGTTTTAVK	1	Acetyl (Protein N-term)	977.50294	0.50293991	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	17.256	13.817	2	3.0649E-07	11868	160511_QHF_FH_JSI9i_1	126.24	112.47			0.93474	0.98848	50.115	7	3	Median	3.4494	2.8541	NaN	1	1	Median	0.76457	0.89521	9.7525	2	0	Median	1.3466	1.3168	52.068	2	1	Median	1.3748	1.4684	55.966	2	1	Median	1333400000	600810000	732570000	322460000	109590000	212870000	446930000	280750000	166190000	270060000	98629000	171430000	293930000	111840000	182080000	4859	2354	4585	29998;29999;30000;30001;30002;30003;30004	41135;41136;41137;41138;41139;41140;41141	41138			7	
ASGTVYSGEEK	1	Unmodified	1126.5142	0.51423288	698	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	10.727	10.417	2	0.00010188	8340	160511_QHF_FH_JSI12i_1	86.898	65.434			0.63909	0.71887	42.088	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82367	0.96806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49587	0.53383	NaN	1	0	Median	83951000	49272000	34679000	0	0	0	46965000	25834000	21131000	0	0	0	36986000	23438000	13548000	4860	698	4586	30005;30006	41142;41143	41142			2	
ASGVAVSDGVIK	1	Acetyl (Protein N-term)	1143.6136	0.61355299	1236	P23528	CFL1	Cofilin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	5.3	7		2	6	4	4			1	3	8	8	5	56.836	50.961	2	1.7642E-24	21506	160513_QHF_FH_JSI11Kac_2	111.06	81.584			0.96749	1.0809	263.44	20	5	Median	1.5461	1.2354	175.35	3	0	Median	0.93058	1.0839	292.22	6	2	Median	0.96011	0.93502	272.86	7	2	Median	0.92323	0.97131	301.16	4	1	Median	36671000000	16183000000	20488000000	6535200000	564730000	5970500000	9528600000	5465600000	4063000000	9829200000	4905000000	4924200000	10778000000	5248000000	5530000000	4861	1236	4587	30007;30008;30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024;30025;30026;30027;30028;30029;30030	41144;41145;41146;41147;41148;41149;41150;41151;41152;41153;41154;41155;41156;41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172;41173;41174	41147			31	
ASGVAVSDGVIKVFNDMK	2	Acetyl (Protein N-term)	1877.9557	0.95569893	1236	P23528	CFL1	Cofilin-1	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			100.34	100.32	2	4.37E-07	91005	160511_QHF_FH_JSI10i_1	109.22	85.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10077000	10077000	0	0	0	0	10077000	10077000	0	0	0	0	0	0	0	4862	1236	4588	30031	41175	41175			1	
ASGVEAR	0	Unmodified	688.3504	0.35040244	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1									1	2	3	1.0851	0.80796	2	0.0099712	364	160511_QHF_FH_JSI12i_1	76.847	22.082			0.98209	1.0526	18.1	6	0	Median	NaN	NaN	NaN	0	0	Median	0.89548	1.0501	NaN	1	0	Median	0.93607	0.91586	20.01	2	0	Median	1.0771	1.2092	18.33	3	0	Median	1327400000	675130000	652230000	0	0	0	352730000	185930000	166800000	406670000	214600000	192070000	567960000	274600000	293360000	4863	1332	4589	30032;30033;30034;30035;30036;30037	41176;41177;41178;41179;41180;41181;41182;41183;41184;41185;41186;41187	41181			12	
ASGVQVADEVCR	0	Acetyl (Protein N-term)	1331.614	0.6139637	1925	P60981	DSTN	Destrin	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	48.415	47.645	2	5.6342E-06	42304	160511_QHF_FH_JSI9i_1	130.63	114.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4864	1925	4590	30038;30039;30040	41188;41189;41190	41190			3	
ASGVSKATEVSK	2	Acetyl (K)	1204.6299	0.62993134	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	28.826	20.971	2	5.7183E-08	12748	160513_QHF_FH_JSI11Kac_3	113.38	82.692			0.66265	0.71181	23.185	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80093	0.95452	NaN	1	0	Median	0.62091	0.60398	NaN	1	0	Median	0.66265	0.71181	NaN	1	0	Median	25512000	15030000	10482000	0	0	0	8081000	4408300	3672700	11041000	7320400	3721000	6389300	3301200	3088100	4865	5436	4591	30041;30042;30043	41191;41192;41193	41191	3412		3	
ASGVTVNDEVIK	1	Acetyl (Protein N-term)	1272.6561	0.65614609	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	3			3						1	2	2	1	58.276	54.094	2	3.791E-06	48866	160511_QHF_FH_JSI10i_1	117.7	95.612			0.75446	0.83679	67.768	5	2	Median	1.0141	0.83679	NaN	1	0	Median	0.36436	0.41761	101.41	2	1	Median	0.33823	0.32259	NaN	1	1	Median	0.82185	0.86506	NaN	1	0	Median	450250000	301250000	148990000	168600000	94778000	73822000	124360000	92300000	32055000	153630000	112310000	41316000	3664900	1863300	1801600	4866	5500	4592	30044;30045;30046;30047;30048;30049	41194;41195;41196;41197;41198;41199;41200	41195			7	
ASGYQSSQK	1	Unmodified	954.44067	0.44067401	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.09	9	3	4			6				8	4	6	4	3.9367	0.76686	2	9.1281E-07	2074	160511_QHF_FH_JSI12i_1	135.79	84.825			1.0453	1.0609	54.819	22	5	Median	1.3782	1.0225	35.439	8	1	Median	0.92145	1.1003	21.234	4	0	Median	0.78296	0.77853	88.367	6	2	Median	1.057	1.161	56.376	4	2	Median	6064300000	3659000000	2405200000	1040200000	499530000	540650000	1800600000	1278700000	521870000	1320900000	737050000	583820000	1902600000	1143700000	758910000	4867	1758	4593	30050;30051;30052;30053;30054;30055;30056;30057;30058;30059;30060;30061;30062;30063;30064;30065;30066;30067;30068;30069;30070;30071	41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211;41212;41213;41214;41215;41216;41217;41218;41219;41220;41221;41222;41223;41224;41225;41226;41227;41228;41229;41230;41231;41232	41210			32	
ASGYQSSQKK	2	Unmodified	1082.5356	0.53563702	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.73	0.445		3	8							4	7			0.98256	0.56401	2;3	1.4354E-05	560	160511_QHF_FH_JSI10i_3	116.3	63.823			1.1838	1.0244	155.34	11	4	Median	1.6297	1.3655	171.95	4	1	Median	0.56242	0.68139	157.62	7	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	513400000	315330000	198070000	157750000	81387000	76360000	355650000	233940000	121710000	0	0	0	0	0	0	4868	1758	4594	30072;30073;30074;30075;30076;30077;30078;30079;30080;30081;30082	41233;41234;41235;41236;41237;41238;41239;41240;41241;41242;41243;41244	41238			12	
ASHALIK	1	Unmodified	738.43882	0.43882351	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.6686	6.7663	2	0.040857	4327	160511_QHF_FH_JSI12i_3	49.358	15.62			1.1229	1.1165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1229	1.1165	NaN	1	1	Median	77158000	42655000	34503000	0	0	0	0	0	0	0	0	0	77158000	42655000	34503000	4869	376	4595	30083	41245	41245			1	
ASHEEVEGLVEK	1	Unmodified	1325.6463	0.64630969	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	27.58	26.68	2;3	4.8309E-11	22357	160511_QHF_FH_JSI11i_2	150.46	136.25			0.87381	0.98553	12.624	7	0	Median	1.2591	1.0857	1.8753	2	0	Median	0.80451	0.98553	NaN	1	0	Median	0.97016	0.98059	16.324	2	0	Median	0.76331	0.85176	9.4624	2	0	Median	512400000	277700000	234700000	97533000	49771000	47762000	62145000	33250000	28895000	225610000	122910000	102700000	127110000	71770000	55343000	4870	2271	4596	30084;30085;30086;30087;30088;30089;30090	41246;41247;41248;41249;41250;41251;41252;41253;41254	41252			8	
ASHFGPFIAK	1	Unmodified	1073.5658	0.56581494	4426	Q9BTX7	TTPAL	Alpha-tocopherol transfer protein-like	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			40.733	39.228	3	0.0032049	32722	160511_QHF_FH_JSI10i_3	52.49	37.816			3.5234	3.9475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.5234	3.9475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133300000	20830000	112470000	0	0	0	133300000	20830000	112470000	0	0	0	0	0	0	4871	4426	4597	30091	41255	41255			1	
ASHGYGGKFGVEQDR	1	Acetyl (K)	1648.7594	0.75938238	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		39.443	30.375	3	9.6438E-05	16985	160513_QHF_FH_JSI10Kac_6	88.768	68.035			1.382	1.5779	77.952	3	0	Median	1.8514	1.5819	NaN	1	0	Median	1.382	1.5779	NaN	1	0	Median	0.4353	0.4095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30592000	13661000	16931000	7803000	2832400	4970600	12665000	4491900	8173400	10124000	6337000	3786500	0	0	0	4872	2522	4598	30092;30093;30094	41256;41257;41258;41259	41259	2516		4	
ASHGYGGKFGVEQDRMDK	2	Acetyl (K)	2022.9218	0.92177304	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			42.791	34.174	3	0.0059513	18996	160513_QHF_FH_JSI10Kac_6	58.577	47.633			1.7796	2.132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7796	2.132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9300000	3103500	6196500	0	0	0	9300000	3103500	6196500	0	0	0	0	0	0	4873	2522	4599	30095	41260;41261;41262	41262	2516		3	
ASHKPTYENLQK	2	Unmodified	1414.7205	0.72047768	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.079	11.282	3	0.00089957	8700	160511_QHF_FH_JSI9i_3	65.563	50.531			1.2488	1.029	NaN	1	0	Median	1.2488	1.029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40545000	16433000	24111000	40545000	16433000	24111000	0	0	0	0	0	0	0	0	0	4874	5647	4600	30096	41263	41263			1	
ASHLLETLLCK	1	Unmodified	1283.6908	0.69075746	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			68.036	66.555	3	0.00085875	55675	160511_QHF_FH_JSI10i_3	47.288	44.339			0.59409	0.67088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59409	0.67088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23141000	15258000	7883100	0	0	0	23141000	15258000	7883100	0	0	0	0	0	0	4875	2213	4601	30097	41264;41265	41264			2	
ASHNIGIAMDTEQGLIVPNVK	1	Unmodified	2206.1416	0.14160222	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	73.862	73.395	3	1.5987E-22	63677	160511_QHF_FH_JSI12i_3	159.04	154.24			1.0384	1.1482	13.686	4	0	Linear	0.99551	0.8622	NaN	1	0	Median	0.70784	0.86594	NaN	1	0	Median	1.1539	1.0724	NaN	1	0	Median	1.0831	1.1149	NaN	1	0	Median	464410000	239730000	224680000	27144000	14227000	12917000	44519000	26606000	17913000	116200000	46553000	69652000	276540000	152340000	124200000	4876	991	4602	30098;30099;30100;30101	41266;41267;41268;41269;41270;41271	41271			5	
ASHNIGIAMDTEQGLIVPNVK	1	Oxidation (M)	2222.1365	0.13651684	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	63.738	63.452	3	2.8808E-05	54740	160511_QHF_FH_JSI12i_3	61.767	52.721			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4877	991	4602	30102	41272	41272		572	1	
ASHPEDPASVVEAR	0	Unmodified	1463.7005	0.70047052	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		2	0		3								1	1	1		27.725	26.951	3	0.0044582	23434	160511_QHF_FH_JSI10i_2	42.52	37.226			0.40956	0.41617	37.548	3	0	Plateau	0.53619	0.45261	NaN	1	0	Median	0.68344	0.82827	NaN	1	0	Median	0.40956	0.41617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	186680000	129770000	56916000	53147000	37255000	15892000	49179000	30154000	19025000	84355000	62357000	21999000	0	0	0	4878	5305	4603	30103;30104;30105	41273	41273			1	
ASHPSVTER	0	Unmodified	982.48321	0.48320752	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			5.6639	5.2081	2	0.00045995	3291	160511_QHF_FH_JSI10i_3	84.498	65.715			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4879	2466	4604	30106;30107	41274;41275	41274			2	
ASIGQSPGLPSTTFK	1	Unmodified	1489.7777	0.77765821	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	1	2	3	56.059	55.323	2	3.3838E-05	48543	160511_QHF_FH_JSI9i_2	81.625	56.239			0.79406	0.81966	32.008	7	4	Median	0.78676	0.64082	NaN	1	1	Median	0.59862	0.69269	NaN	1	1	Median	0.98162	0.96624	25.618	2	0	Median	1.3362	1.0568	29.856	3	2	Plateau	202660000	99730000	102930000	18365000	9049900	9315300	38567000	23538000	15029000	59392000	28943000	30449000	86337000	38200000	48137000	4880	2984	4605	30108;30109;30110;30111;30112;30113;30114;30115	41276;41277;41278;41279;41280;41281;41282;41283;41284;41285;41286	41285			10	
ASIHEAWTDGK	1	Unmodified	1213.5728	0.57275081	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.49		12	4						8	4	4	8	8	27.423	24.4	2;3	3.5406E-13	20278	160511_QHF_FH_JSI11i_2	168.74	153.53			1.0208	1.0347	46.701	21	5	Median	0.64169	0.53684	15.342	4	1	Median	0.55683	0.67769	0.49343	3	0	Median	1.498	1.4886	23.361	7	2	Median	1.0242	1.0539	37.223	7	2	Median	3713900000	1754500000	1959400000	349270000	198850000	150420000	347340000	208230000	139110000	1443900000	559690000	884200000	1573400000	787690000	785710000	4881	361;1021	4606	30116;30117;30118;30119;30120;30121;30122;30123;30124;30125;30126;30127;30128;30129;30130;30131;30132;30133;30134;30135;30136;30137;30138;30139	41287;41288;41289;41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308;41309;41310;41311;41312;41313;41314;41315;41316	41301			27	
ASILDEYENSLSR	0	Acetyl (Protein N-term)	1537.726	0.72601657	5199	Q9P253	VPS18	Vacuolar protein sorting-associated protein 18 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	97.343	97.153	2	0.00017323	86012	160511_QHF_FH_JSI9i_1	100.72	81.977			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4882	5199	4607	30140;30141;30142;30143	41317;41318;41319;41320	41320			4	
ASILNTWISLK	1	Unmodified	1244.7129	0.71287311	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	88.777	84.373	2	1.627E-87	42625	160513_QHF_FH_JSI9Kac_6	247.08	200			0.91767	0.90364	15.977	8	1	Median	1.0539	0.86158	6.4341	2	0	Median	0.80884	0.94595	6.167	2	0	Median	0.89429	0.84714	21.565	2	0	Median	0.88234	0.93544	32.448	2	1	Median	7706100000	3770800000	3935300000	1908500000	852620000	1055900000	1735800000	897710000	838090000	1403400000	668260000	735150000	2658400000	1352300000	1306200000	4883	1206	4608	30144;30145;30146;30147;30148;30149;30150;30151	41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334;41335;41336;41337;41338;41339;41340;41341;41342	41337			22	
ASINMLR	0	Unmodified	803.43236	0.43235793	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.55	3	3	5				2	4	4	4	6	6	5	35.734	30.812	2	0.00016877	25170	160511_QHF_FH_JSI9i_3	138.85	34.737			1.0716	1.0484	29.457	21	0	Median	1.4006	1.1671	3.6022	4	0	Median	0.90009	1.0659	28.96	6	0	Median	1.1073	1.0785	32.68	6	0	Median	0.90674	1.0048	34.039	5	0	Median	10866000000	4989300000	5876600000	2087600000	872190000	1215500000	2562800000	1251100000	1311700000	3557100000	1642500000	1914600000	2658300000	1223400000	1434900000	4884	1138	4609	30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166;30167;30168;30169;30170;30171;30172	41343;41344;41345;41346;41347;41348;41349;41350;41351;41352;41353;41354;41355;41356;41357;41358;41359;41360;41361;41362	41353			20	
ASINMLR	0	Oxidation (M)	819.42727	0.42727255	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.15		2	4					1	2	4	1	2	2	24.112	20.611	2	0.020978	26919	160511_QHF_FH_JSI9i_2	67.032	6.2332			0.98014	0.99112	18.654	9	0	Median	1.1724	0.98838	26.421	4	0	Median	0.98014	1.1312	NaN	1	0	Median	0.99497	0.9449	15.082	2	0	Median	0.94034	0.98647	10.937	2	0	Median	913210000	476910000	436310000	212290000	100670000	111620000	114910000	54883000	60030000	161270000	82482000	78787000	424740000	238870000	185870000	4885	1138	4609	30173;30174;30175;30176;30177;30178;30179;30180;30181	41363;41364;41365	41364		765	3	
ASINMLRIVEPYIAWGYPNLK	1	Unmodified	2447.3035	0.30352259	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.347	89.626	3	1.3308E-09	51680	160513_QHF_FH_JSI10Kac_6	152.13	123.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60090000	60090000	0	0	0	0	60090000	60090000	0	0	0	0	0	0	0	4886	1138	4610	30182	41366	41366			1	
ASINPVTGR	0	Unmodified	913.49813	0.49812931	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	20.83	20.039	2	0.0013529	16458	160511_QHF_FH_JSI11i_2	69.423	28.394			1.2235	1.2597	19.643	3	0	Median	1.7576	1.5047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2235	1.2597	NaN	1	0	Median	0.93562	1.0164	NaN	1	0	Median	130570000	59075000	71493000	41245000	14452000	26794000	0	0	0	58137000	29838000	28300000	31184000	14785000	16399000	4887	4908	4611	30183;30184;30185	41367	41367			1	
ASIPFSVVGSNQLIEAK	1	Unmodified	1758.9516	0.95159983	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	2.82	7	8	6					1		3	5	7	7	85.735	84.729	2;3	7.4795E-41	74124	160511_QHF_FH_JSI12i_3	160.8	140.57			0.99167	1.0128	9.4339	20	3	Median	1.1478	1.0072	7.728	3	0	Median	0.75548	0.92798	9.7355	5	1	Median	1.024	1.0387	8.7826	7	0	Median	0.96057	1.0427	11.411	5	2	Median	1843600000	907490000	936120000	227930000	102460000	125470000	475460000	250770000	224690000	703080000	333900000	369170000	437150000	220360000	216790000	4888	2603	4612	30186;30187;30188;30189;30190;30191;30192;30193;30194;30195;30196;30197;30198;30199;30200;30201;30202;30203;30204;30205;30206;30207	41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403;41404;41405;41406	41405			39	
ASIPFSVVGSNQLIEAKGK	2	Acetyl (K)	1986.0786	0.078591257	2603	Q15019	SEPT2	Septin-2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		86.363	75.854	3	0.0073585	39886	160513_QHF_FH_JSI11Kac_5	52.784	43.127			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1733800	1733800	0	0	0	0	0	0	0	1733800	1733800	0	0	0	0	4889	2603	4613	30208	41407	41407	2575		1	
ASIQAASAESSGQK	1	Unmodified	1333.6474	0.64737232	2914	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	13.783	13.346	2	3.4352E-06	10717	160511_QHF_FH_JSI9i_1	132.5	105.99			0.87362	0.77613	42.581	4	3	Median	0.78833	0.62942	NaN	1	1	Median	0.51122	0.59024	NaN	1	1	Median	1.498	1.4788	NaN	1	0	Median	0.96814	0.95702	NaN	1	1	Median	95469000	58006000	37463000	25150000	18461000	6689200	27172000	20788000	6384200	27933000	8965200	18968000	15214000	9792300	5421700	4890	2914	4614	30209;30210;30211;30212;30213	41408;41409;41410;41411;41412	41412			5	
ASITALEAK	1	Unmodified	902.5073	0.50729701	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26	5	4	1			2	3	3		3	5	6	4	36.969	31.931	2	1.4722E-23	18368	160513_QHF_FH_JSI10Kac_4	176.6	71.468			0.93261	1.0299	37.633	17	4	Median	1.0893	0.89698	50.878	3	1	Median	0.89416	1.0943	12.4	5	0	Median	1.1455	1.1319	51.234	5	2	Median	0.85222	0.93988	44.829	4	1	Median	4949200000	2551200000	2398100000	942730000	482760000	459970000	1468500000	771570000	696950000	1548300000	811960000	736330000	989690000	484880000	504810000	4891	1436	4615	30214;30215;30216;30217;30218;30219;30220;30221;30222;30223;30224;30225;30226;30227;30228;30229;30230;30231	41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437	41423			25	
ASITPGTILIILTGR	0	Unmodified	1524.9239	0.92392852	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	2.93			1	3	2	4	2	2	8	1	6	7	8	98.092	89.547	2;3	2.0129E-88	50462	160513_QHF_FH_JSI9Kac_6	243.4	202.68			0.91094	0.96283	21.005	21	7	Median	1.2261	1.2127	NaN	1	0	Median	0.82125	0.89051	33.321	5	2	Linear	0.88109	0.8692	6.7801	7	2	Median	0.91771	0.98144	5.2547	8	3	Median	56883000000	30142000000	26741000000	8291400000	3749800000	4541600000	15841000000	8868600000	6972400000	14105000000	7382800000	6722500000	18645000000	10140000000	8504800000	4892	2196	4616	30232;30233;30234;30235;30236;30237;30238;30239;30240;30241;30242;30243;30244;30245;30246;30247;30248;30249;30250;30251;30252;30253	41438;41439;41440;41441;41442;41443;41444;41445;41446;41447;41448;41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461;41462;41463;41464;41465;41466;41467;41468;41469;41470	41461			33	
ASIWVGHR	0	Acetyl (Protein N-term)	966.50355	0.50354903	1018	P12429	ANXA3	Annexin A3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	2	3	3	48.215	44.242	2	3.5273E-05	37755	160511_QHF_FH_JSI12i_3	76.847	58.182			0.45623	0.42115	85.76	4	0	Median	0.3261	0.27754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63827	0.63907	NaN	1	0	Median	0.284	0.30031	132.07	2	0	Median	355860000	246730000	109130000	83110000	57911000	25199000	0	0	0	99563000	62661000	36902000	173190000	126160000	47025000	4893	1018	4617	30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264	41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481	41479			9	
ASKEMFEDTVEER	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1669.7141	0.71413125	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.7	0.64				4	5	1					4	2	4	70.768	61.343	2	3.1147E-05	24537	160513_QHF_FH_JSI10Kac_1	99.522	89.569			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4894	2741	4618	30265;30266;30267;30268;30269;30270;30271;30272;30273;30274	41482;41483;41484;41485;41486;41487;41488;41489;41490;41491	41489	2660	2120	10	
ASKEMFEDTVEER	1	Acetyl (K);Acetyl (Protein N-term)	1653.7192	0.71921663	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.687				1	3	2					3	1	2	79.296	70.943	2	7.3213E-07	27932	160513_QHF_FH_JSI10Kac_1	122.7	112.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4895	2741	4618	30275;30276;30277;30278;30279;30280	41492;41493;41494;41495;41496;41497	41496	2660		6	
ASKFGNTEQGFK	2	Acetyl (K)	1354.6517	0.65172941	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	46.52	36.28	2	0.00326	21550	160513_QHF_FH_JSI11Kac_4	70.488	60.801			0.37771	0.37457	94.58	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5494	1.8234	NaN	1	0	Median	0.37771	0.37457	NaN	1	0	Median	0.31358	0.33694	NaN	1	0	Median	15807000	11139000	4668100	0	0	0	2972200	1247000	1725200	8052800	6408800	1644000	4782300	3483300	1299000	4896	1685	4619	30281;30282;30283	41498;41499;41500	41499	1706		3	
ASKPGEPSWPCPWGK	2	Unmodified	1682.7875	0.78751139	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	53.91	53.791	3	0.0023975	45280	160511_QHF_FH_JSI10i_3	51.643	47.919			1.1548	1.129	38.22	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92644	0.86164	NaN	1	1	Median	1.4394	1.4793	NaN	1	1	Median	246010000	99403000	146610000	0	0	0	0	0	0	102940000	55602000	47338000	143070000	43802000	99267000	4897	1665	4620	30284;30285;30286	41501;41502;41503	41502			3	
ASKPLPPAPAPDEYLVSPITGEK	2	Unmodified	2376.2577	0.25767783	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.201	72.906	3	1.0794E-05	63263	160511_QHF_FH_JSI12i_3	58.457	43.843			1.1247	1.1084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.1084	NaN	1	0	Median	27268000	14093000	13174000	0	0	0	0	0	0	0	0	0	27268000	14093000	13174000	4898	2676	4621	30287	41504;41505	41505			2	
ASLAAVHLFTAK	1	Unmodified	1227.6976	0.69755739	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	4	2	2	1	65.814	58.85	2;3	1.7282E-06	31212	160513_QHF_FH_JSI9Kac_6	111.86	92.877			0.93821	1.002	30.818	8	2	Median	1.1963	1.0077	43.27	4	2	Median	0.85433	1.0264	3.0106	2	0	Median	0.90498	0.86149	NaN	1	0	Median	0.80656	0.87466	NaN	1	0	Median	236500000	104840000	131660000	132900000	47576000	85326000	38886000	21920000	16966000	49647000	26721000	22926000	15064000	8622100	6441500	4899	5329	4622	30288;30289;30290;30291;30292;30293;30294;30295;30296	41506;41507;41508;41509;41510;41511;41512;41513;41514	41510			8	
ASLACGPMVK	1	Unmodified	1032.5096	0.50962197	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	32.206	31.42	2	0.004538	26674	160511_QHF_FH_JSI12i_2	55.112	38.909			1.0188	0.9172	34.678	5	1	Median	1.0413	0.9172	NaN	1	0	Median	1.0188	1.2171	NaN	1	0	Median	0.77479	0.75619	40.774	2	1	Median	0.51116	0.56928	NaN	1	0	Median	163400000	88025000	75373000	15466000	6582000	8884200	26381000	14224000	12158000	84940000	46797000	38143000	36610000	20422000	16188000	4900	2517	4623	30297;30298;30299;30300;30301	41515;41516;41517	41515			3	
ASLAETDK	1	Unmodified	833.41306	0.41306227	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4	5.2	3					1				1	1	1	1	10.297	8.1279	2	0.0024281	6686	160511_QHF_FH_JSI9i_1	80.165	57.674			0.91683	1.0635	38.509	4	1	Linear	1.2719	1.0478	NaN	1	0	Median	0.90866	1.0795	NaN	1	0	Median	2.0511	2.0246	NaN	1	1	Median	0.77917	0.82096	NaN	1	0	Median	1184400000	620790000	563640000	317810000	133420000	184390000	415320000	253370000	161950000	8594600	4154900	4439700	442710000	229850000	212860000	4901	1479	4624	30302;30303;30304;30305	41518;41519;41520	41520			3	
ASLAHLLDMMK	1	Unmodified	1228.6308	0.63079974	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	3	2	82.654	81.953	2;3	1.351E-05	71035	160511_QHF_FH_JSI12i_3	86.911	63.993			0.98117	1.0905	21.571	6	2	Median	1.4091	1.1506	NaN	1	0	Median	0.98117	1.1297	12.572	2	0	Median	1.6811	1.5523	NaN	1	1	Median	0.84849	0.88488	0.97417	2	1	Median	245320000	117850000	127480000	35765000	13781000	21984000	57257000	32472000	24785000	43919000	19046000	24874000	108380000	52548000	55835000	4902	2547	4625	30306;30307;30308;30309;30310;30311;30312;30313;30314;30315	41521;41522;41523;41524;41525;41526;41527;41528;41529;41530;41531;41532;41533;41534;41535;41536;41537;41538;41539	41538			19	
ASLASLPPLHVAK	1	Unmodified	1302.766	0.76597131	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	58.96	58.176	3	5.7645E-05	49991	160511_QHF_FH_JSI12i_3	77.644	71.507			0.91469	0.97739	6.2415	7	0	Median	1.307	1.1008	NaN	1	0	Median	0.84476	0.98772	5.0921	2	0	Median	0.97636	0.95904	5.0999	2	0	Median	0.86925	0.94942	4.1056	2	0	Median	1313200000	662160000	651010000	70114000	24231000	45883000	189720000	95752000	93964000	495660000	256010000	239650000	557680000	286170000	271510000	4903	2516	4626	30316;30317;30318;30319;30320;30321;30322	41540;41541;41542;41543;41544;41545;41546;41547;41548	41548			7	
ASLCISTKK	2	Unmodified	1006.5481	0.54811597	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	18.285	17.167	2;3	0.0017896	13543	160511_QHF_FH_JSI12i_3	75.378	32.78			0.54956	0.53706	25.377	2	2	Median	0.79246	0.64263	NaN	1	1	Median	0.38112	0.44884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56179000	34350000	21829000	29484000	15025000	14459000	26694000	19325000	7369500	0	0	0	0	0	0	4904	939	4627	30323;30324;30325;30326;30327;30328	41549;41550;41551;41552;41553;41554	41554			6	
ASLDRPFTNLESAFYSIVGLSSLGAQVPDAK	1	Unmodified	3252.6667	0.66665778	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	98.527	90.1	3	4.7524E-184	54135	160513_QHF_FH_JSI10Kac_6	275.19	251.27			0.81328	0.93692	10.003	4	0	Linear	1.0125	0.84853	NaN	1	0	Median	0.82152	0.97277	NaN	1	0	Median	0.80512	0.76503	NaN	1	0	Median	0.78128	0.82749	NaN	1	0	Median	559680000	308270000	251410000	178560000	99328000	79233000	203880000	121050000	82829000	73975000	34644000	39331000	103260000	53244000	50018000	4905	817	4628	30329;30330;30331;30332	41555;41556;41557;41558	41557			4	
ASLDRPFTNLESAFYSIVGLSSLGAQVPDAKK	2	Unmodified	3380.7616	0.7616208	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									2	1	1			97.177	89.764	4	1.3567E-21	53119	160513_QHF_FH_JSI10Kac_6	118.74	108.13			1.1977	1.1973	16.528	2	0	Median	1.2718	1.0653	NaN	1	0	Median	1.128	1.3458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	287290000	138810000	148480000	130580000	61819000	68766000	156710000	76993000	79714000	0	0	0	0	0	0	4906	817	4629	30333;30334	41559;41560;41561;41562	41560			4	
ASLEAAIADAEQR	0	Unmodified	1343.6681	0.66810776	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.04	4	5	2				3			3	4	3	4	60.32	57.413	2;3	1.0784E-15	49840	160511_QHF_FH_JSI11i_2	165.63	139.53		+	0.87575	0.88349	37.297	14	3	Median	1.0602	0.88671	67.131	3	1	Plateau	0.72644	0.87786	23.879	4	0	Median	0.84237	0.82278	28.713	3	0	Median	0.89448	0.96036	8.1544	4	2	Median	3776400000	2232400000	1544000000	318490000	171990000	146500000	338050000	215020000	123030000	2540700000	1549000000	991710000	579180000	296410000	282770000	4907	51	4630	30335;30336;30337;30338;30339;30340;30341;30342;30343;30344;30345;30346;30347;30348	41563;41564;41565;41566;41567;41568;41569;41570;41571;41572;41573;41574;41575;41576;41577;41578;41579;41580;41581;41582;41583;41584	41578			22	
ASLEAAIADAEQRGELAIK	1	Unmodified	1955.0324	0.032369346	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.28	0.665	3	12	10							3	6	7	9	85.551	84.991	2;3	4.2098E-137	73920	160511_QHF_FH_JSI12i_3	295.37	260.62		+	1.1104	1.0939	26.052	25	13	Median	1.1267	0.93748	7.254	3	0	Plateau	0.77176	0.94885	39.727	6	3	Median	1.1104	1.1101	13.451	7	4	Median	1.2171	1.2326	25.667	9	6	Median	34810000000	15398000000	19412000000	2064300000	830670000	1233700000	3417600000	1529500000	1888100000	9061900000	4256200000	4805700000	20266000000	8781500000	11484000000	4908	51	4631	30349;30350;30351;30352;30353;30354;30355;30356;30357;30358;30359;30360;30361;30362;30363;30364;30365;30366;30367;30368;30369;30370;30371;30372;30373	41585;41586;41587;41588;41589;41590;41591;41592;41593;41594;41595;41596;41597;41598;41599;41600;41601;41602;41603;41604;41605;41606;41607;41608;41609;41610;41611;41612;41613;41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636	41631			52	
ASLEAAVADAEQRGELAIK	1	Unmodified	1941.0167	0.016719282	85	CON__REFSEQ:XP_092267			yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	85.409	84.59	2;3	0.00010112	73157	160511_QHF_FH_JSI12i_2	62.203	39.4		+	0.5248	0.62279	64.266	2	1	Median	NaN	NaN	NaN	0	0	Median	0.32058	0.39535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85912	0.98107	NaN	1	0	Median	479550000	311610000	167940000	0	0	0	164360000	126830000	37527000	0	0	0	315190000	184780000	130410000	4909	85	4632	30374;30375;30376	41637;41638;41639;41640;41641	41638			5	
ASLEDAPVDDLTR	0	Unmodified	1400.6783	0.6783381	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	4					4				1		4	3	58.738	54.351	2	3.9116E-06	49050	160511_QHF_FH_JSI11i_1	123.62	85.532			1.1597	1.1499	14.781	7	4	Median	1.4647	1.1983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1574	1.1405	3.4995	3	2	Plateau	1.2012	1.2623	24.606	3	1	Median	507200000	226730000	280480000	105220000	41581000	63635000	0	0	0	259670000	116560000	143110000	142320000	68587000	73730000	4910	3250	4633	30377;30378;30379;30380;30381;30382;30383;30384	41642;41643;41644;41645;41646;41647;41648;41649	41643			8	
ASLEDAPVDDLTRK	1	Unmodified	1528.7733	0.77330111	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.14	0.35	6	1								1	3	3		48.796	48.196	2;3	0.00019281	43400	160511_QHF_FH_JSI10i_1	85.006	73.03			1.1439	1.3479	54.681	5	3	Median	0.92255	0.75963	NaN	1	0	Median	1.0597	1.247	11.002	2	1	Median	2.1831	2.1831	62.368	2	2	Median	NaN	NaN	NaN	0	0	Median	474620000	204620000	269990000	71390000	42564000	28826000	200600000	93303000	107300000	202630000	68757000	133870000	0	0	0	4911	3250	4634	30385;30386;30387;30388;30389;30390;30391	41650;41651;41652;41653;41654;41655;41656;41657;41658	41654			9	
ASLEEPPDGPSAGQATGPGEGRR	0	Unmodified	2235.0516	0.051601238	4470	Q9BVG9	PTDSS2	Phosphatidylserine synthase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			31.828	30.707	3	1.4633E-10	26982	160511_QHF_FH_JSI10i_2	98.816	91.064			0.99758	1.1624	13.961	3	1	Median	1.4787	1.2463	NaN	1	0	Median	0.87599	1.0521	14.093	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90412000	44856000	45556000	40068000	12994000	27074000	50345000	31862000	18482000	0	0	0	0	0	0	4912	4470	4635	30392;30393;30394	41659;41660;41661	41661			3	
ASLEGNLAETENR	0	Unmodified	1402.6688	0.66883604	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			3	2	2	2	33.464	31.64	2	2.4736E-66	28281	160511_QHF_FH_JSI10i_1	226.33	201.56		+	0.92752	0.88397	16.266	8	2	Median	0.97334	0.82524	8.7639	2	1	Median	0.68111	0.82465	10.645	2	0	Median	1.1807	1.1395	14.076	2	1	Median	0.86547	0.93212	8.322	2	0	Median	1847900000	1006000000	841910000	359010000	193370000	165640000	583640000	367290000	216350000	481300000	242630000	238670000	423970000	202720000	221240000	4913	65	4636	30395;30396;30397;30398;30399;30400;30401;30402;30403	41662;41663;41664;41665;41666;41667;41668;41669;41670;41671;41672;41673	41666			12	
ASLEKAGK	2	Acetyl (K)	844.46543	0.46543219	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		19.018	11.579	2	0.0092551	8250	160513_QHF_FH_JSI11Kac_3	75.738	22.575			0.3029	0.30833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3029	0.30833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5840800	4732400	1108400	0	0	0	0	0	0	5840800	4732400	1108400	0	0	0	4914	1812	4637	30404	41674	41674	1832		1	
ASLENSLR	0	Unmodified	888.46649	0.46649483	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.13		4	4				2	3	1	4	3	4	3	25.03	20.71	2	1.9679E-10	13326	160513_QHF_FH_JSI11Kac_4	147.29	60.817			1.0796	1.028	8.5871	14	1	Median	1.2444	1.1348	8.8143	4	0	Linear	0.79679	0.95491	4.9111	3	1	Median	1.0909	1.0463	5.2165	4	0	Median	1.0673	1.18	7.0614	3	0	Median	8448200000	4124500000	4323600000	1919000000	791420000	1127600000	1723600000	1011400000	712210000	2764300000	1317200000	1447100000	2041300000	1004500000	1036800000	4915	842	4638	30405;30406;30407;30408;30409;30410;30411;30412;30413;30414;30415;30416;30417;30418	41675;41676;41677;41678;41679;41680;41681;41682;41683;41684;41685;41686;41687;41688	41681			14	
ASLENSLREVEAR	0	Unmodified	1472.7583	0.75831975	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			45.437	44.427	2	0.011372	38846	160511_QHF_FH_JSI9i_2	61.353	26.975			1.2022	1.2083	18.83	2	0	Median	1.2627	1.0577	NaN	1	0	Median	1.1445	1.3804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164870000	74540000	90326000	74023000	32308000	41715000	90843000	42231000	48611000	0	0	0	0	0	0	4916	842	4639	30419;30420	41689;41690	41689			2	
ASLENVHPPIAPPPTEIPER	0	Unmodified	2163.1324	0.13241774	3209	Q75N03	CBLL1	E3 ubiquitin-protein ligase Hakai	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.419	66.126	3	0.00062722	57178	160511_QHF_FH_JSI12i_3	68.639	59.078			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4917	3209	4640	30421	41691	41691			1	
ASLESWWQNPVPGLR	0	Unmodified	1738.8791	0.87910359	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	95.182	95.081	2	8.7589E-98	82262	160511_QHF_FH_JSI12i_3	257.8	241.7			0.85936	0.86393	16.583	4	1	Median	0.80258	0.69212	NaN	1	0	Median	0.64152	0.78891	NaN	1	1	Median	1.0463	0.99034	NaN	1	0	Median	0.92015	0.94609	NaN	1	0	Median	139560000	73054000	66507000	19754000	10681000	9073600	23667000	13850000	9816800	30947000	15518000	15429000	65193000	33005000	32188000	4918	5734	4641	30422;30423;30424;30425	41692;41693;41694;41695;41696;41697	41696			5	
ASLEVSR	0	Acetyl (Protein N-term)	802.41848	0.418482	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	3									2			1	31.093	30.056	1;2	0.024514	26344	160511_QHF_FH_JSI9i_1	36.044	6.7061			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4919	445	4642	30426;30427;30428	41698;41699;41700	41700			3	
ASLEVTQQQATQAEGQLLELRK	1	Unmodified	2440.2922	0.29216586	3125	Q6PJ69	TRIM65	Tripartite motif-containing protein 65	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.844	73.844	3	4.1032E-10	65904	160511_QHF_FH_JSI11i_3	108.17	78.279			1.7781	1.6766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7781	1.6766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27270000	8796400	18474000	0	0	0	0	0	0	27270000	8796400	18474000	0	0	0	4920	3125	4643	30429	41701	41701			1	
ASLGLADHR	0	Unmodified	938.49338	0.49337828	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			3							1	2			17.263	16.218	2;3	0.00073782	13171	160511_QHF_FH_JSI10i_3	52.725	19.885			0.82471	1.0122	17.426	3	0	Plateau	1.231	1.0122	NaN	1	0	Median	0.98821	1.1182	23.266	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117060000	60514000	56545000	22868000	9910100	12958000	94191000	50604000	43587000	0	0	0	0	0	0	4921	5507	4644	30430;30431;30432	41702;41703	41703			2	
ASLGSLEGEAEAEASSPK	1	Unmodified	1731.8163	0.81628814	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.59	57.941	2	9.3124E-38	52568	160511_QHF_FH_JSI11i_1	234.85	203.66			1.2469	1.2019	15.467	4	4	Median	1.2733	1.0656	NaN	1	1	Median	1.0767	1.2413	NaN	1	1	Median	1.2211	1.1637	NaN	1	1	Median	1.4883	1.5322	NaN	1	1	Median	344490000	155550000	188940000	79021000	36064000	42956000	85393000	43279000	42114000	107970000	43464000	64501000	72109000	32738000	39372000	4922	2286	4645	30433;30434;30435;30436	41704;41705;41706;41707;41708	41704			5	
ASLHALVGSPIIWGGEPR	0	Unmodified	1859.0054	0.0053667345	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	80.664	77.032	3	1.1794E-11	65801	160511_QHF_FH_JSI9i_3	134.85	131.25			0.42387	0.3501	35.68	3	3	Plateau	0.42387	0.3501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70761	0.71038	NaN	1	1	Median	0.52529	0.54032	NaN	1	1	Median	183990000	127750000	56247000	106190000	73807000	32386000	0	0	0	36631000	25830000	10801000	41170000	28111000	13059000	4923	3313	4646	30437;30438;30439	41709;41710;41711	41710			3	
ASLIEYIK	1	Unmodified	935.53278	0.53278348	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				61.368	60.409	2	0.012756	53185	160511_QHF_FH_JSI9i_2	61.962	25.567			0.36466	0.31103	NaN	1	1	Median	0.36466	0.31103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113050000	93011000	20039000	113050000	93011000	20039000	0	0	0	0	0	0	0	0	0	4924	1052	4647	30440	41712	41712			1	
ASLINNAFQLVSIGK	1	Unmodified	1573.8828	0.88279198	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	100.51	100.42	2	4.875E-30	81383	160511_QHF_FH_JSI9i_3	192.86	161.1			1.0439	0.95355	16.683	4	0	Median	1.0298	0.84709	NaN	1	0	Median	0.71789	0.81544	NaN	1	0	Median	1.2144	1.1374	NaN	1	0	Median	1.0583	1.0734	NaN	1	0	Median	582360000	318390000	263970000	136150000	69851000	66298000	161040000	94910000	66126000	117820000	61280000	56541000	167360000	92352000	75007000	4925	5142	4648	30441;30442;30443;30444;30445	41713;41714;41715;41716;41717;41718;41719;41720;41721;41722	41718			10	
ASLISAVSDK	1	Unmodified	989.53933	0.53932542	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0		By matching	By MS/MS		14	0							2				1	1		51.398	40.842	2	1.0184E-05	23951	160513_QHF_FH_JSI11Kac_4	105.4	62.15			0.95837	1.0172	5.0399	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86096	0.9816	NaN	1	0	Median	1.0668	1.0541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11382000	5983700	5398400	0	0	0	2467100	1233300	1233800	8915000	4750400	4164600	0	0	0	4926	4319	4649	30446;30447	41723;41724	41724			2	
ASLISAVSDKLR	1	Unmodified	1258.7245	0.72450043	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	6.25	5.63			3						1	2	1		1	98.903	96.628	2	0.0084487	87955	160511_QHF_FH_JSI12i_3	64.297	5.864			0.86424	0.80161	5.4059	4	1	Median	0.95485	0.79547	2.5629	2	1	Median	0.74397	0.88181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79399	0.79329	NaN	1	0	Median	251720000	116350000	135370000	65111000	31079000	34032000	55944000	29371000	26573000	0	0	0	130660000	55895000	74766000	4927	4319	4650	30448;30449;30450;30451	41725;41726	41726			2	
ASLLAGK	1	Unmodified	658.40138	0.40137537	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	3.27	6	5	4					1		5	3	4	4	13.847	12.836	2	0.0062806	11466	160511_QHF_FH_JSI9i_2	92.191	92.191			1.0396	1.0789	17.63	16	1	Median	1.3953	1.1401	12.937	5	1	Median	0.78688	0.89864	18.307	3	0	Median	0.98545	0.973	14.957	4	0	Median	0.93831	0.99397	20.309	4	0	Median	5615600000	2928000000	2687700000	1271400000	532280000	739120000	1067000000	587940000	479090000	1632900000	913030000	719870000	1644300000	894710000	749600000	4928	3313	4651	30452;30453;30454;30455;30456;30457;30458;30459;30460;30461;30462;30463;30464;30465;30466;30467	41727;41728;41729;41730;41731;41732;41733;41734;41735;41736;41737;41738;41739	41734			13	
ASLLDPVPEVR	0	Unmodified	1194.6608	0.66083754	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	66.304	64.487	2	4.1769E-06	56788	160511_QHF_FH_JSI9i_2	116.3	85.231			0.69119	0.77771	38.81	10	10	Median	0.91157	0.79033	10.689	3	3	Plateau	0.65064	0.77771	0.28808	2	2	Median	0.74421	0.72951	12.961	2	2	Median	0.64273	0.70248	63.74	3	3	Median	1208200000	696230000	511970000	230680000	115360000	115320000	286760000	174010000	112750000	372530000	219580000	152960000	318210000	187280000	130930000	4929	3860	4652	30468;30469;30470;30471;30472;30473;30474;30475;30476;30477	41740;41741;41742;41743;41744;41745;41746;41747;41748;41749	41746			10	
ASLLGDMHFR	0	Unmodified	1145.5652	0.56516301	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.237	56.405	3	3.6918E-06	49690	160511_QHF_FH_JSI11i_3	94.309	84.952			0.79321	0.85094	27.523	4	1	Median	1.7446	1.3977	NaN	1	1	Median	0.78281	0.90184	NaN	1	0	Median	0.80375	0.76333	NaN	1	0	Median	0.77111	0.80291	NaN	1	0	Median	136160000	72275000	63884000	24517000	9313100	15204000	14516000	8083800	6431800	56589000	31338000	25251000	40536000	23539000	16997000	4930	1726	4653	30478;30479;30480;30481	41750;41751;41752;41753;41754;41755;41756	41751			7	
ASLLLIWALTK	1	Unmodified	1227.7591	0.75909502	2556	Q14674	ESPL1	Separin	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		96.266	87.033	2	2.4766E-05	49435	160513_QHF_FH_JSI11Kac_6	101.95	83.174			1.1085	1.0104	33.141	2	0	Median	0.94189	0.79936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3046	1.2773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85056000	40869000	44187000	40495000	24880000	15615000	0	0	0	44561000	15989000	28572000	0	0	0	4931	2556	4654	30482;30483	41757	41757			1	
ASLLQNESTNEQLQIHYK	1	Unmodified	2115.0596	0.059646729	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	3	3	56.6	55.856	2;3	9.3646E-67	48185	160511_QHF_FH_JSI12i_3	230.01	221.41			0.9325	0.94041	70.308	9	3	Median	0.9325	0.79123	NaN	1	1	Median	0.79488	0.92218	122.09	3	2	Median	0.86478	0.85891	12.819	2	0	Median	0.98149	0.99027	4.0393	3	0	Plateau	2102000000	1078200000	1023800000	164940000	74654000	90286000	390600000	178980000	211620000	668200000	339260000	328940000	878240000	485320000	392910000	4932	4411	4655	30484;30485;30486;30487;30488;30489;30490;30491;30492;30493	41758;41759;41760;41761;41762;41763;41764;41765;41766;41767;41768;41769;41770;41771;41772;41773;41774	41772			17	
ASLLQSDR	0	Acetyl (Protein N-term)	930.47706	0.47705951	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	48.316	47.546	2	0.00044872	42826	160511_QHF_FH_JSI10i_1	101.6	40.813			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4933	5348	4656	30494;30495;30496	41775;41776;41777	41776			3	
ASLLTDEEDVDMALDQR	0	Unmodified	1919.8782	0.87823647	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	2	3	3	78.293	77.861	2;3	3.8566E-66	70579	160511_QHF_FH_JSI10i_1	237.3	220.92			1.0407	1.1214	23.241	8	4	Median	0.84586	0.69026	NaN	1	1	Median	1.0096	1.1817	0.93196	2	0	Median	1.0924	1.0541	2.2747	2	1	Median	1.2855	1.2929	22.088	3	2	Median	273560000	139720000	133840000	14758000	9705400	5052500	89692000	43543000	46148000	76123000	43923000	32200000	92983000	42543000	50440000	4934	1790	4657	30497;30498;30499;30500;30501;30502;30503;30504;30505	41778;41779;41780;41781;41782;41783;41784;41785;41786;41787;41788;41789;41790;41791	41787			14	
ASLMNDDFEK	1	Unmodified	1168.507	0.50703901	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.414	41.76	2	5.9969E-05	37646	160511_QHF_FH_JSI11i_1	91.095	64.402			1.1831	1.103	16.379	4	0	Median	1.3133	1.0712	NaN	1	0	Median	1.2136	1.4346	NaN	1	0	Median	1.1534	1.1356	NaN	1	0	Median	0.95076	0.97705	NaN	1	0	Median	776640000	376500000	400140000	131870000	64098000	67776000	216440000	78417000	138020000	239480000	124870000	114600000	188850000	109110000	79735000	4935	5435	4658	30506;30507;30508;30509	41792;41793;41794;41795;41796;41797;41798	41793			7	
ASLNGADIYSGCCTLK	1	Unmodified	1728.7811	0.78110538	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	53.505	52.892	2	1.9633E-08	47940	160511_QHF_FH_JSI11i_1	175.29	153.9			0.91617	0.87457	18.297	5	4	Median	0.98805	0.819	NaN	1	1	Median	0.91617	1.0853	NaN	1	0	Median	0.81858	0.79314	13.821	2	2	Median	1.0773	1.0971	NaN	1	1	Median	362910000	171310000	191600000	44311000	19035000	25276000	74044000	36468000	37576000	159640000	81101000	78535000	84922000	34708000	50214000	4936	1063	4659	30510;30511;30512;30513;30514	41799;41800;41801;41802;41803	41800			5	
ASLNPSDTPPSVVNEDFLHDLK	1	Unmodified	2394.1703	0.17031939	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	84.63	84.094	3	4.897E-10	74056	160511_QHF_FH_JSI11i_2	105.16	97.622			1.0318	1.0524	11.97	9	3	Median	1.3372	1.094	5.4736	2	0	Median	1.0033	1.2215	15.09	3	2	Plateau	1.0903	1.064	7.5613	2	0	Median	0.95932	1.0292	23.642	2	1	Median	846020000	395170000	450860000	113520000	44575000	68946000	311960000	148630000	163320000	251870000	115060000	136820000	168670000	86900000	81771000	4937	93	4660	30515;30516;30517;30518;30519;30520;30521;30522;30523	41804;41805;41806;41807;41808;41809;41810;41811;41812;41813;41814;41815;41816;41817;41818;41819;41820;41821	41819			18	
ASLNWHMK	1	Unmodified	985.48037	0.48037075	4144	Q96JP5;Q96CK0	ZFP91;ZNF653	E3 ubiquitin-protein ligase ZFP91;Zinc finger protein 653	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			32.982	31.573	3	0.002955	25661	160511_QHF_FH_JSI9i_3	52.482	43.268			0.90133	0.87567	9.4092	2	0	Median	1.1379	0.93592	NaN	1	0	Median	0.71392	0.81931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	244840000	138330000	106510000	118330000	58374000	59953000	126520000	79959000	46557000	0	0	0	0	0	0	4938	4144	4661	30524;30525	41822;41823;41824	41823			2	
ASLPGVK	1	Unmodified	670.40138	0.40137537	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.09	4	5	2				3	3		3	4	5	5	25.331	21.628	2	0.00023291	13879	160513_QHF_FH_JSI11Kac_4	118.01	61.985			1.0011	1.0005	22.791	17	2	Median	1.3339	1.0626	9.112	3	1	Median	0.88956	1.0693	21.198	4	0	Median	1.0335	1.0005	34.189	5	1	Median	0.85631	0.88872	13.387	5	0	Median	4854300000	2537600000	2316700000	898940000	411600000	487350000	1163400000	664690000	498740000	1653600000	888930000	764680000	1138300000	572430000	565900000	4939	1245	4662	30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537;30538;30539;30540;30541;30542	41825;41826;41827;41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845	41835			21	
ASLPGVKK	2	Unmodified	798.49634	0.49633839	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	15.171	14.69	2	0.00053359	12010	160511_QHF_FH_JSI10i_3	105.39	72.92			1.0695	1.0596	19.804	4	0	Median	0.98631	0.80322	NaN	1	0	Median	0.82462	0.96224	NaN	1	0	Median	1.2761	1.2439	NaN	1	0	Median	1.1597	1.1669	NaN	1	0	Median	1988300000	971600000	1016700000	356430000	143690000	212740000	313660000	171080000	142590000	521070000	241910000	279160000	797110000	414920000	382190000	4940	1245	4663	30543;30544;30545;30546	41846;41847;41848;41849;41850;41851;41852;41853;41854	41849			9	
ASLPTGEGSISHEEQK	1	Unmodified	1668.7955	0.79549312	4379	Q9BRQ6	CHCHD6	MICOS complex subunit MIC25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	27.33	26.428	3	2.4645E-05	22824	160511_QHF_FH_JSI9i_2	94.007	76.866			0.98781	1.0306	4.7336	4	1	Median	1.2307	1.0548	NaN	1	1	Median	0.82297	1.0068	NaN	1	0	Median	0.9751	0.97311	NaN	1	0	Median	1.0007	1.0819	NaN	1	0	Median	159930000	76592000	83341000	26999000	10209000	16790000	32806000	17557000	15249000	60369000	28429000	31940000	39759000	20397000	19362000	4941	4379	4664	30547;30548;30549;30550	41855;41856;41857;41858;41859	41856			5	
ASLPTLGFTHFQPAQLTTVGK	1	Unmodified	2213.1845	0.18445331	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	4	2	3	3	89.331	86.718	3	1.1399E-57	75738	160511_QHF_FH_JSI10i_3	214.55	188.73			0.90236	0.87622	12.794	12	6	Median	1.0695	0.90335	10.326	4	2	Median	0.85339	1.0161	10.484	2	0	Median	0.90746	0.86669	5.8295	3	2	Plateau	0.78409	0.80366	20.926	3	2	Plateau	2158900000	1178500000	980400000	544150000	276270000	267880000	374430000	196700000	177720000	492810000	260870000	231950000	747490000	444650000	302850000	4942	1359	4665	30551;30552;30553;30554;30555;30556;30557;30558;30559;30560;30561;30562	41860;41861;41862;41863;41864;41865;41866;41867;41868;41869;41870;41871;41872;41873;41874;41875;41876;41877;41878;41879	41865			20	
ASLPYSQISGLNALQLR	0	Unmodified	1829.9999	0.99994701	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	1	3	90.39	90.056	2;3	2.4296E-40	78243	160511_QHF_FH_JSI12i_3	203.39	186.03			0.96415	1.0377	30.094	6	1	Median	2.2213	1.9054	NaN	1	0	Median	0.83288	0.97767	12.512	2	1	Median	1.0987	1.0082	NaN	1	0	Median	0.93812	0.93292	21.784	2	0	Median	162460000	75253000	87204000	20252000	6868600	13383000	34982000	18385000	16597000	38964000	16503000	22461000	68260000	33497000	34763000	4943	4234	4666	30563;30564;30565;30566;30567;30568;30569	41880;41881;41882;41883;41884;41885;41886;41887;41888	41886			8	
ASLQETHFDSTQTK	1	Unmodified	1591.7478	0.74781464	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.38		4					1	3		1	2	2	3	30.089	23.685	2;3	9.071E-10	19947	160511_QHF_FH_JSI12i_2	105.17	79.128			1.0751	1.135	51.618	6	4	Median	1.6493	1.3758	NaN	1	0	Median	0.7073	0.82281	53.625	2	1	Median	0.94435	0.90573	23.782	2	2	Median	2.3266	2.5322	NaN	1	1	Median	42593000	17607000	24986000	3106600	1171200	1935300	8694100	4002800	4691300	30078000	12258000	17821000	714480	175740	538740	4944	618	4667	30570;30571;30572;30573;30574;30575;30576;30577	41889;41890;41891;41892;41893;41894;41895;41896	41889			8	
ASLQVLGTVGEPINPEAWLWYHR	0	Unmodified	2635.3547	0.35470654	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.241	87.52	3	0.00035963	50264	160513_QHF_FH_JSI10Kac_6	73.574	53.499			0.8676	1.0252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8676	1.0252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34590000	27866000	6724000	0	0	0	34590000	27866000	6724000	0	0	0	0	0	0	4945	4938	4668	30578	41897	41897			1	
ASLQWFNQALEDK	1	Unmodified	1548.7573	0.75725712	35;4105	A8CG34;A6NF01;Q96HA1	POM121C;POM121B;POM121	Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	80.754	80.234	2	1.5443E-06	71590	160511_QHF_FH_JSI11i_3	127.17	103.08			1.0555	0.98658	16.567	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0678	1.2205	NaN	1	0	Median	1.0555	0.98658	NaN	1	0	Median	0.87401	0.88063	NaN	1	0	Median	234000000	116080000	117920000	0	0	0	33780000	17276000	16504000	117420000	50128000	67290000	82801000	48672000	34129000	4946	35;4105	4669	30579;30580;30581	41898;41899	41898			2	
ASLSAPGSEYGSPSVISVSK	1	Unmodified	1921.9633	0.96328673	337	O43474	KLF4	Krueppel-like factor 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	61.361	60.817	2	1.1812E-16	55280	160511_QHF_FH_JSI12i_1	119.87	96.191			0.70939	0.7014	14.312	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66477	0.63389	NaN	1	1	Median	0.75701	0.77609	NaN	1	1	Median	54121000	38898000	15224000	0	0	0	0	0	0	29889000	22711000	7178600	24232000	16187000	8044900	4947	337	4670	30582;30583;30584	41900;41901;41902	41902			3	
ASLSKLGDVYVNDAFGTAHR	1	Acetyl (K)	2162.0756	0.075631144	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.355	72.222	3	8.1252E-45	39195	160513_QHF_FH_JSI11Kac_6	177.09	162.74			0.71256	0.76124	174.6	3	1	Median	NaN	NaN	NaN	0	0	Median	9.5308	11.181	NaN	1	1	Median	0.44856	0.42293	NaN	1	0	Median	0.71256	0.76124	NaN	1	0	Median	340160000	192280000	147880000	0	0	0	68130000	6690400	61440000	216650000	151260000	65393000	55374000	34325000	21049000	4948	775;866	4671	30585;30586;30587	41903;41904;41905	41903	390		3	
ASLSLAPVNIFK	1	Acetyl (Protein N-term)	1300.7391	0.73908786	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.98	101.88	2	1.0812E-23	92473	160511_QHF_FH_JSI12i_1	99.442	55.634			0.82306	0.98075	4.7869	4	0	Linear	1.1743	0.98396	NaN	1	0	Median	0.81276	0.97755	NaN	1	0	Median	0.93793	0.91299	NaN	1	0	Median	0.96357	1.0247	NaN	1	0	Median	9193500000	4664600000	4528900000	2091800000	979240000	1112500000	2473600000	1359900000	1113600000	2375300000	1182600000	1192800000	2252800000	1142800000	1110000000	4949	2090	4672	30588;30589;30590;30591	41906;41907;41908;41909;41910;41911;41912	41907			7	
ASLSLIEK	1	Unmodified	859.50148	0.50148335	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	43.114	42.359	2	0.0035516	36209	160511_QHF_FH_JSI12i_2	71.692	27.297			0.913	0.83804	20.648	7	0	Median	0.913	0.78476	NaN	1	0	Median	0.57795	0.69042	5.7763	2	0	Median	0.92944	0.92412	13.828	2	0	Median	1.0255	1.0972	2.9822	2	0	Median	1351800000	660030000	691800000	191490000	76170000	115320000	372750000	211400000	161350000	441320000	227480000	213840000	346270000	144980000	201290000	4950	1766	4673	30592;30593;30594;30595;30596;30597;30598	41913;41914;41915;41916;41917;41918;41919;41920;41921	41915			9	
ASLSLWQAMEK	1	Unmodified	1262.6329	0.63290823	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.286	73.996	2	2.325E-05	64134	160511_QHF_FH_JSI12i_3	101.38	79.684			0.69876	0.70117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69876	0.70117	NaN	1	0	Median	52700000	31058000	21642000	0	0	0	0	0	0	0	0	0	52700000	31058000	21642000	4951	1898	4674	30599	41922	41922			1	
ASLSPDASDFEHITAETPSRPLSSTSNPFK	1	Unmodified	3188.5262	0.52620113	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		77.819	76.938	4	1.3219E-12	64456	160511_QHF_FH_JSI10i_3	75.717	69.283			1.0629	1.0825	5.8517	4	2	Median	1.2707	1.0351	NaN	1	0	Median	0.92073	1.1133	7.9329	2	1	Median	1.2149	1.1132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	205040000	98583000	106460000	56569000	23024000	33545000	107640000	63274000	44365000	40837000	12286000	28551000	0	0	0	4952	2911	4675	30600;30601;30602;30603	41923;41924;41925;41926;41927	41924			5	
ASLSPVIYDSLTGLMTSLVAVELEK	1	Unmodified	2635.403	0.40302144	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		104.38	104.29	3	0.002232	91995	160511_QHF_FH_JSI11i_2	41.087	38.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4953	4808	4676	30604	41928	41928			1	
ASLTQEK	1	Unmodified	775.40758	0.40758296	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	7.6856	7.3379	2	0.0096695	5303	160511_QHF_FH_JSI12i_1	78.149	35.235			0.87984	1.212	23.941	4	0	Linear	1.5496	1.2811	NaN	1	0	Median	0.96059	1.1466	NaN	1	0	Median	1.4407	1.3991	NaN	1	0	Median	0.77108	0.81047	NaN	1	0	Median	863420000	457660000	405760000	190050000	96733000	93312000	225450000	126010000	99437000	218510000	109890000	108620000	229410000	125020000	104390000	4954	1616	4677	30605;30606;30607;30608	41929;41930;41931	41929			3	
ASLVALPEQTASEEETPPPLLTK	1	Unmodified	2420.2686	0.26863645	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.252	86.803	3	4.8355E-08	77157	160511_QHF_FH_JSI9i_1	73.981	70.825			0.93593	0.91479	5.4563	4	0	Median	1.0605	0.85223	NaN	1	0	Median	0.78573	0.93279	NaN	1	0	Median	0.9962	0.96807	NaN	1	0	Median	0.8793	0.89714	NaN	1	0	Median	256780000	130030000	126740000	59857000	23580000	36276000	59385000	33512000	25873000	82366000	43341000	39026000	55169000	29599000	25570000	4955	5380	4678	30609;30610;30611;30612	41932;41933;41934;41935;41936;41937;41938;41939	41939			8	
ASLYNAVTIEDVQK	1	Unmodified	1549.7988	0.79878758	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							4	3	2	3	62.951	62.099	2	1.1781E-07	51919	160511_QHF_FH_JSI10i_3	97.911	73.057			1.039	1.0774	16.673	9	2	Median	1.0983	0.91733	15.01	3	1	Median	0.82689	0.9995	19.818	2	1	Median	0.93553	0.91523	25.394	2	0	Median	1.0556	1.1503	4.4373	2	0	Median	748210000	357400000	390820000	128180000	64565000	63613000	236290000	108840000	127450000	197930000	100130000	97802000	185810000	83859000	101950000	4956	5697	4679	30613;30614;30615;30616;30617;30618;30619;30620;30621;30622;30623;30624	41940;41941;41942;41943;41944;41945;41946;41947;41948;41949;41950	41941			11	
ASLYPCPETPQER	0	Unmodified	1546.7086	0.70859237	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		39.889	39.565	2	0.00827	35504	160511_QHF_FH_JSI10i_1	48.44	23.586			1.0661	1.0571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0661	1.0571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26701000	13880000	12820000	0	0	0	0	0	0	26701000	13880000	12820000	0	0	0	4957	3926	4680	30625;30626	41951;41952	41952			2	
ASMAGASSSK	1	Unmodified	895.40693	0.40693104	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		5.9494	-1.5109	2	0.0056151	2137	160513_QHF_FH_JSI11Kac_3	61.56	46.179			1.097	1.0712	39.853	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.097	1.0712	39.853	2	1	Median	NaN	NaN	NaN	0	0	Median	16047000	6347400	9699400	0	0	0	0	0	0	16047000	6347400	9699400	0	0	0	4958	2409	4681	30627;30628;30629	41953;41954;41955	41953			3	
ASMDVENPDYSEEILK	1	Unmodified	1838.8244	0.82440998	5126	Q9NYH9	UTP6	U3 small nucleolar RNA-associated protein 6 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	65.309	64.772	2	0.00010488	58847	160511_QHF_FH_JSI11i_1	95.401	81.437			1.126	1.1484	14.511	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0555	1.0364	NaN	1	1	Median	1.2013	1.2725	NaN	1	1	Median	82383000	44549000	37833000	0	0	0	0	0	0	41738000	21362000	20376000	40645000	23188000	17457000	4959	5126	4682	30630;30631;30632	41956;41957;41958	41956			3	
ASMENQPHSK	1	Unmodified	1127.503	0.50295669	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.12	0.331		7	1							2	2	2	2	5.1659	4.8577	2;3	6.8957E-05	2711	160511_QHF_FH_JSI11i_2	100.48	74.74			0.82891	0.96362	9.347	8	0	Median	1.157	1.0131	5.5301	2	0	Median	0.82199	1.0031	1.9077	2	0	Median	0.8863	0.87524	12.046	2	0	Median	0.81128	0.8701	3.8157	2	0	Median	787600000	390680000	396930000	195920000	86480000	109440000	183530000	92377000	91151000	193340000	104700000	88642000	214810000	107120000	107690000	4960	707	4683	30633;30634;30635;30636;30637;30638;30639;30640	41959;41960;41961;41962;41963;41964	41961			6	
ASMENQPHSKPLPSDIAVIMYTSGSTGLPK	2	Unmodified	3155.5631	0.56312069	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	82.691	81.955	4	4.0315E-27	70821	160511_QHF_FH_JSI12i_3	116.35	113.94			0.84597	0.91123	8.1681	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7497	0.86009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95462	0.96541	NaN	1	0	Median	173750000	89014000	84736000	0	0	0	33633000	20466000	13168000	0	0	0	140120000	68549000	71568000	4961	707	4684	30641;30642	41965;41966;41967;41968	41967			4	
ASMGTLAFDEYGRPFLIIK	1	Acetyl (Protein N-term)	2170.1133	0.1132622	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.79	7.22	3	4							7	3	3	4	4	98.96	94.516	2;3	1.4129E-210	89655	160511_QHF_FH_JSI9i_2	158.58	136.7			1.1151	1.1318	43.604	14	1	Median	1.2968	1.0991	97.756	3	1	Median	0.9309	1.1116	5.0561	3	0	Median	1.0036	1.0071	8.6435	4	0	Linear	0.88719	1.153	15.774	4	0	Linear	7302700000	3596400000	3706300000	1215400000	544080000	671290000	1617800000	862060000	755770000	2228000000	1075100000	1153000000	2241500000	1115200000	1126300000	4962	1630	4685	30643;30644;30645;30646;30647;30648;30649;30650;30651;30652;30653;30654;30655;30656	41969;41970;41971;41972;41973;41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984;41985;41986	41976			18	
ASMGTLAFDEYGRPFLIIK	1	Acetyl (Protein N-term);Oxidation (M)	2186.1082	0.10817683	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	1	1	1			By MS/MS		16	0									1			1		92.246	82.874	2	0.0003568	46555	160513_QHF_FH_JSI11Kac_6	101.6	85.245			1.5907	1.5498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5907	1.5498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96171000	19192000	76979000	0	0	0	0	0	0	96171000	19192000	76979000	0	0	0	4963	1630	4685	30657	41987	41987		1300	1	
ASMHPVTAMLVGK	1	Unmodified	1340.6945	0.69446263	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	2	3	1	51.745	49.419	2;3	2.2247E-10	40676	160511_QHF_FH_JSI9i_3	175.15	155.88			1.0136	1.0244	5.7931	7	0	Median	1.2663	1.0158	2.1567	2	0	Median	0.88992	1.0258	0.18678	2	0	Median	1.0822	1.0459	10.805	2	0	Median	0.92939	0.9395	NaN	1	0	Median	3490400000	1645100000	1845300000	1348700000	639070000	709630000	1040200000	499530000	540630000	442100000	203170000	238930000	659450000	303320000	356140000	4964	943	4686	30658;30659;30660;30661;30662;30663;30664;30665	41988;41989;41990;41991;41992;41993;41994;41995;41996;41997;41998;41999;42000;42001;42002;42003	41998			15	
ASMHPVTAMLVGK	1	Oxidation (M)	1356.6894	0.68937725	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			8							3	3		2	37.685	36.404	2;3	0.00011951	30847	160511_QHF_FH_JSI10i_3	70.54	66.861			1.1402	1.1014	23.281	7	3	Median	1.6998	1.3825	16.271	3	2	Median	0.81014	0.94732	24.079	3	1	Median	NaN	NaN	NaN	0	0	Median	0.8833	0.9036	NaN	1	0	Median	617580000	292550000	325030000	328030000	128020000	200000000	178190000	99210000	78977000	0	0	0	111370000	65320000	46049000	4965	943	4686	30666;30667;30668;30669;30670;30671;30672;30673	42004;42005;42006;42007;42008;42009;42010;42011;42012;42013	42007		519	10	
ASMHPVTAMLVGK	1	2 Oxidation (M)	1372.6843	0.68429187	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	2	0	By MS/MS				3	0			1							1				25.148	23.809	3	0.022611	19228	160511_QHF_FH_JSI9i_3	31.656	28.947			1.2305	0.99835	NaN	1	0	Median	1.2305	0.99835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39275000	16227000	23048000	39275000	16227000	23048000	0	0	0	0	0	0	0	0	0	4966	943	4686	30674	42014	42014		519	1	
ASMIAMMAGSDFIK	1	Unmodified	1471.6873	0.68732834	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.51		3	10						2	6	3	3	3	89.721	87.843	2;3	5.0431E-10	77945	160511_QHF_FH_JSI12i_3	110.08	93.445			1.1296	1.0779	44.735	13	9	Median	1.3726	1.1626	63.202	5	5	Median	0.91994	1.0378	29.827	3	2	Median	1.1296	1.0779	48.355	3	1	Median	1.0497	1.0621	2.8322	2	1	Median	541090000	262450000	278630000	145330000	65877000	79457000	71870000	34092000	37778000	149350000	78880000	70472000	174530000	83605000	90928000	4967	5555	4687	30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689	42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031;42032;42033;42034;42035	42035			21	
ASMQLEETGVHAPGASQPSALDQSK	1	Unmodified	2538.202	0.20203022	3864	Q92625	ANKS1A	Ankyrin repeat and SAM domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.99	50.575	3	0.00017671	45758	160511_QHF_FH_JSI11i_1	45.972	38.696			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4968	3864	4688	30690	42036	42036			1	
ASMQPIQIAEGTGITTR	0	Unmodified	1772.9091	0.90908309	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	2	3	66.542	65.905	2;3	1.7049E-15	59680	160511_QHF_FH_JSI10i_1	159.52	128.17			1.396	1.3924	12.698	8	3	Median	1.5763	1.3424	NaN	1	1	Median	0.9296	1.0938	1.5742	2	0	Median	1.4499	1.3924	4.1089	2	1	Median	1.4054	1.482	1.5689	3	1	Median	343330000	151240000	192090000	28746000	10001000	18745000	104900000	56343000	48555000	123210000	49919000	73290000	86473000	34974000	51499000	4969	2587	4689	30691;30692;30693;30694;30695;30696;30697;30698	42037;42038;42039;42040;42041;42042;42043;42044	42043			7	
ASMQQQQQLASAR	0	Oxidation (M)	1461.6994	0.69942466	5605	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	10.809	10.425	2	1.9909E-16	15724	160511_QHF_FH_JSI12i_1	136.93	116.63			0.7517	0.8355	13.781	4	0	Median	1.1752	0.96349	NaN	1	0	Median	0.74931	0.89392	NaN	1	0	Median	0.73006	0.70746	NaN	1	0	Median	0.7541	0.78091	NaN	1	0	Median	217270000	118820000	98446000	54604000	24802000	29802000	63900000	33491000	30410000	52235000	34605000	17630000	46529000	25926000	20603000	4970	5605	4690	30699;30700;30701;30702;30703;30704	42045;42046;42047;42048;42049;42050;42051;42052	42049		2709	8	
ASMQQQQQLASAR	0	Unmodified	1445.7045	0.70451004	5605	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.26	6	7					2			4	3	4	4	20.139	18.055	2	6.9173E-155	15406	160511_QHF_FH_JSI11i_1	296.52	273.87			0.99106	0.98267	8.5687	11	5	Median	1.167	0.94932	7.9115	3	2	Plateau	0.88048	1.0755	9.979	3	0	Plateau	0.97267	0.95522	8.6175	3	1	Plateau	0.94562	0.99968	13.854	2	2	Median	1542800000	793710000	749050000	370700000	171490000	199200000	329620000	170810000	158810000	253540000	129860000	123680000	588910000	321550000	267360000	4971	5605	4690	30705;30706;30707;30708;30709;30710;30711;30712;30713;30714;30715;30716;30717;30718;30719	42053;42054;42055;42056;42057;42058;42059;42060;42061;42062;42063;42064;42065;42066;42067;42068;42069;42070;42071;42072	42054			20	
ASNEDGDIK	1	Unmodified	947.4196	0.41960421	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	6.3349	1.8607	2	1.6955E-06	3286	160511_QHF_FH_JSI9i_1	130.66	90.553			0.99903	0.99556	15.088	10	0	Median	1.2203	1.0092	NaN	1	0	Median	1.0306	1.2244	12.06	3	0	Plateau	1.0341	1.0021	6.2743	3	0	Median	0.91229	0.94656	14.59	3	0	Plateau	1545500000	738010000	807500000	197000000	80983000	116020000	455560000	238240000	217320000	388790000	203680000	185110000	504160000	215110000	289050000	4972	5254	4691	30720;30721;30722;30723;30724;30725;30726;30727;30728;30729	42073;42074;42075;42076;42077;42078;42079;42080;42081;42082;42083;42084;42085;42086;42087;42088	42082			16	
ASNEDVTK	1	Unmodified	862.40323	0.40322587	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1	0	3									1		1	1	4.989	4.65	2	0.0052314	2686	160511_QHF_FH_JSI12i_1	66.27	29.875			0.79038	0.82224	9.7026	3	0	Plateau	0.87944	0.72689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90835	0.88025	NaN	1	0	Median	0.77914	0.82224	NaN	1	0	Median	911720000	519100000	392620000	216930000	123750000	93178000	0	0	0	78832000	42595000	36236000	615960000	352760000	263200000	4973	532	4692	30730;30731;30732	42089	42089			1	
ASNGDAWVEAHGK	1	Unmodified	1340.6109	0.61092723	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.21		17	15				1	7	1	10	8	11	12	20.411	17.984	2;3	5.161E-97	14817	160511_QHF_FH_JSI12i_2	238.87	212.19			1.0594	1.088	47.649	35	12	Median	1.314	1.0864	37.932	9	2	Median	0.88432	1.0683	35.729	6	1	Median	1.2771	1.2447	64.952	10	5	Median	1.0007	1.0873	41.713	10	4	Median	13005000000	6198600000	6806500000	1329600000	647030000	682550000	1051700000	600860000	450850000	4814100000	2185200000	2628900000	5809700000	2765500000	3044200000	4974	1480	4693	30733;30734;30735;30736;30737;30738;30739;30740;30741;30742;30743;30744;30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756;30757;30758;30759;30760;30761;30762;30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773	42090;42091;42092;42093;42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106;42107;42108;42109;42110;42111;42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151;42152	42102			63	
ASNGETLEK	1	Unmodified	947.45599	0.45598972	4384	Q9BRT3	MIEN1	Migration and invasion enhancer 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.7601	7.4125	2	0.0016754	4964	160511_QHF_FH_JSI9i_1	68.016	22			0.88464	1.0112	12.524	4	0	Linear	1.159	0.95904	NaN	1	0	Median	0.93812	1.0849	NaN	1	0	Median	0.8342	0.82191	NaN	1	0	Median	0.81716	0.85399	NaN	1	0	Median	593590000	292470000	301120000	159310000	68892000	90419000	164800000	82744000	82060000	114520000	52681000	61841000	154950000	88156000	66796000	4975	4384	4694	30774;30775;30776;30777	42153;42154;42155;42156;42157;42158;42159	42158			7	
ASNGKFVTSK	2	Acetyl (K)	1079.5611	0.56112349	2751	Q16658	FSCN1	Fascin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						2	2				2	2		27.279	19.025	2	0.0044898	12034	160513_QHF_FH_JSI11Kac_3	71.221	48.58			0.60714	0.64747	89.446	4	1	Median	NaN	NaN	NaN	0	0	Median	1.3667	1.6094	52.75	2	1	Median	0.38261	0.37503	1.2062	2	0	Median	NaN	NaN	NaN	0	0	Median	36598000	23055000	13542000	0	0	0	9640900	3673100	5967800	26957000	19382000	7574600	0	0	0	4976	2751	4695	30778;30779;30780;30781	42160;42161;42162;42163	42161	2664		4	
ASNGNARPETVTNDDEEALDEETK	1	Unmodified	2604.1423	0.14232632	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.935	33.333	3	5.4949E-24	29398	160511_QHF_FH_JSI9i_1	147.39	141.16			1.1872	1.1231	13.435	4	0	Median	1.2231	1.0364	NaN	1	0	Median	0.8671	1.0073	NaN	1	0	Median	1.3561	1.3374	NaN	1	0	Median	1.1523	1.217	NaN	1	0	Median	316700000	162330000	154370000	64887000	26821000	38066000	97977000	66554000	31423000	94164000	38562000	55602000	59673000	30393000	29280000	4977	1679	4696	30782;30783;30784;30785	42164;42165;42166;42167;42168;42169;42170;42171	42171			8	
ASNGQWYQMNDSLVHSSNVK	1	Unmodified	2264.028	0.028029025	5204	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		53.908	53.908	3	4.1312E-05	47768	160511_QHF_FH_JSI11i_3	67.396	58.113			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4978	5204	4697	30786	42172	42172			1	
ASNKTTLQK	2	Acetyl (K);Acetyl (Protein N-term)	1073.5717	0.57168818	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						1	1	2	32.475	24.017	2	1.952E-05	10430	160513_QHF_FH_JSI10Kac_1	81.548	57.593			1.0084	1.0477	8.4266	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81249	0.93243	NaN	1	0	Median	1.0962	1.0611	NaN	1	0	Median	1.0084	1.0875	7.0617	2	0	Median	32924000	16693000	16231000	0	0	0	10004000	5096600	4907400	7343500	3514200	3829400	15577000	8082300	7494500	4979	2367	4698	30787;30788;30789;30790	42173;42174;42175;42176	42174	2440		3	
ASNLENSTYDLYTIPK	1	Unmodified	1827.8891	0.88905915	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	67.392	66.811	2;3	1.6473E-116	60911	160511_QHF_FH_JSI11i_1	274.09	246.67			1.0052	0.98984	6.7328	7	1	Median	1.2181	0.99659	6.0982	2	0	Median	0.90782	1.0721	10.611	2	0	Median	1.0055	0.9846	0.75101	2	1	Median	0.89475	0.95247	NaN	1	0	Median	2398200000	1188100000	1210100000	670590000	307350000	363250000	580540000	306720000	273820000	457420000	231200000	226220000	689600000	342830000	346770000	4980	1805	4699	30791;30792;30793;30794;30795;30796;30797	42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188;42189;42190;42191;42192;42193;42194;42195;42196;42197	42180			21	
ASNLLLNYK	1	Unmodified	1034.576	0.57604528	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	2	2	52.999	48	2	3.8515E-05	41018	160511_QHF_FH_JSI12i_2	99.139	81.153			0.66724	0.70663	19.952	5	0	Median	0.69159	0.59429	NaN	1	0	Median	0.56996	0.70663	NaN	1	0	Median	1.044	1.0055	NaN	1	0	Median	0.63158	0.70182	10.121	2	0	Median	261420000	166060000	95367000	108180000	72496000	35688000	80268000	54146000	26121000	3601100	1600600	2000500	69372000	37815000	31557000	4981	4334	4700	30798;30799;30800;30801;30802;30803	42198;42199;42200;42201;42202;42203	42198			6	
ASNLQDLVYK	1	Unmodified	1149.603	0.60298831	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.716	50.04	2	1.3386E-05	44390	160511_QHF_FH_JSI9i_1	101.97	74.232			1.0265	0.93469	9.3414	4	0	Median	1.0866	0.88458	NaN	1	0	Median	0.7457	0.8716	NaN	1	0	Median	1.0773	1.0608	NaN	1	0	Median	0.97809	0.98765	NaN	1	0	Median	674420000	338890000	335530000	134400000	59252000	75150000	156470000	84672000	71798000	203590000	104560000	99035000	179950000	90409000	89544000	4982	679	4701	30804;30805;30806;30807	42204;42205;42206;42207	42207			4	
ASNPERGEILLTELQGDSR	0	Acetyl (Protein N-term)	2126.0604	0.06037501	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.5	1	6	1							1	3	1	3	78.043	77.255	2;3	1.531E-05	66519	160511_QHF_FH_JSI12i_2	45.257	24.606			0.95281	1.0471	7.003	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90146	1.1288	NaN	1	0	Median	0.96759	0.98136	NaN	1	0	Median	0.95281	1.0471	NaN	1	0	Median	802800000	436970000	365820000	0	0	0	296140000	149710000	146420000	312500000	180210000	132290000	194160000	107050000	87111000	4983	2732	4702	30808;30809;30810;30811;30812;30813;30814;30815	42208;42209;42210;42211;42212;42213;42214;42215	42208			8	
ASNTADTLFQEVLGRK	1	Unmodified	1748.9057	0.90571227	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			82.354	81.071	3	0.058879	67947	160511_QHF_FH_JSI10i_3	23.635	12.977			1.0425	1.1678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0425	1.1678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22286000	10509000	11777000	0	0	0	22286000	10509000	11777000	0	0	0	0	0	0	4984	4159	4703	30816	42216	42216			1	
ASNTAEVFFDGVR	0	Unmodified	1411.6732	0.67319314	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.43	0.728	5	1	1							2	3	2		62.842	61.992	2	1.2935E-16	56214	160511_QHF_FH_JSI10i_1	132.5	119.91			1.0603	1.1062	18.273	5	4	Median	1.1646	0.96398	19.467	2	1	Median	0.95399	1.1569	11.589	2	2	Median	1.3916	1.3525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	677090000	258030000	419060000	74148000	29963000	44184000	394450000	163160000	231300000	208490000	64915000	143580000	0	0	0	4985	1675	4704	30817;30818;30819;30820;30821;30822;30823	42217;42218;42219;42220;42221;42222;42223	42220			7	
ASNTAEVFFDGVRVPSENVLGEVGSGFK	1	Unmodified	2911.4352	0.43520128	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	101.01	100.95	3	2.4821E-83	90003	160511_QHF_FH_JSI11i_3	237.97	228.63			1.0878	1.2521	26.029	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0878	1.2521	NaN	1	0	Median	1.5429	1.4842	NaN	1	0	Median	0.87667	0.89026	NaN	1	1	Median	559630000	284200000	275430000	117800000	64219000	53582000	59035000	27454000	31581000	241810000	101430000	140380000	140990000	91101000	49889000	4986	1675	4705	30824;30825;30826;30827	42224;42225;42226;42227;42228	42224			5	
ASNVTNK	1	Acetyl (Protein N-term)	774.38718	0.38718187	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.26	4			2	2					1	2	3	2	11.008	7.5972	2	0.00018764	3713	160513_QHF_FH_JSI10Kac_1	71.852	41.184			1.0347	1.0532	23.233	7	0	Median	1.5226	1.2422	NaN	1	0	Median	1.0705	1.2539	7.7229	2	0	Median	1.0419	1.0107	5.8137	2	0	Median	0.72421	0.76481	15.642	2	0	Median	2867600000	1472800000	1394800000	611980000	239400000	372580000	718820000	356210000	362620000	627620000	322990000	304620000	909180000	554200000	354980000	4987	882	4706	30828;30829;30830;30831;30832;30833;30834;30835	42229;42230;42231;42232;42233;42234;42235;42236;42237;42238;42239	42237			11	
ASPAFDYAEFEPHIVPSTK	1	Unmodified	2105.0106	0.010571271	2679	Q15527	SURF2	Surfeit locus protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								1	2			80.819	80.137	3	0.00011582	71301	160511_QHF_FH_JSI10i_2	70.986	61.927			0.69952	0.71799	13.503	3	3	Plateau	0.75972	0.6559	NaN	1	1	Median	0.67666	0.81935	5.8851	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122480000	76729000	45752000	41561000	28775000	12786000	80920000	47954000	32966000	0	0	0	0	0	0	4988	2679	4707	30836;30837;30838	42240;42241;42242	42242			3	
ASPAGGPLEDVVIER	0	Unmodified	1508.7835	0.78347187	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		63.509	62.882	2	0.00036495	54780	160511_QHF_FH_JSI11i_2	97.463	81.892			0.92222	0.89179	8.5308	5	0	Median	0.99437	0.84461	NaN	1	0	Median	0.72795	0.86773	15.499	2	0	Median	0.92797	0.90977	2.8224	2	0	Median	NaN	NaN	NaN	0	0	Median	231240000	121200000	110040000	29717000	14539000	15178000	78309000	43131000	35178000	123210000	63533000	59681000	0	0	0	4989	3973	4708	30839;30840;30841;30842;30843	42243;42244;42245;42246	42244			4	
ASPAGTAGGPGAGAAAGGTGPLAAR	0	Unmodified	1962.9872	0.98715049	2331	Q12962	TAF10	Transcription initiation factor TFIID subunit 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.987	37.567	2	1.0679E-51	33822	160511_QHF_FH_JSI11i_1	206.8	182.54			1.0546	1.0679	7.9129	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86274	0.95511	NaN	1	0	Median	1.1657	1.1181	NaN	1	0	Median	0.95405	1.02	NaN	1	0	Median	93365000	46405000	46960000	0	0	0	19631000	10223000	9408100	37355000	16834000	20521000	36379000	19348000	17031000	4990	2331	4709	30844;30845;30846	42247;42248;42249;42250;42251;42252;42253;42254	42248			8	
ASPALVAK	1	Unmodified	755.45414	0.45413923	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							2	1	1	1	17.37	16.873	2	0.0059236	14062	160511_QHF_FH_JSI9i_1	60.76	8.9727			1.0323	1.0224	7.0696	4	0	Median	1.3183	1.107	NaN	1	0	Median	0.78901	0.93279	NaN	1	0	Median	1.0845	1.01	NaN	1	0	Median	0.98269	1.035	NaN	1	0	Median	423130000	234540000	188590000	34012000	15312000	18700000	93996000	46681000	47315000	69525000	35078000	34447000	225600000	137470000	88124000	4991	3883	4710	30847;30848;30849;30850;30851	42255;42256;42257;42258	42258			4	
ASPAPGSGHPEGPGAHLDMNSLDR	0	Unmodified	2369.0819	0.081855509	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	3	1	41.916	41.393	3;4	6.7184E-13	36509	160511_QHF_FH_JSI10i_2	102.6	89.923			0.90602	1.0452	15.551	7	0	Median	1.4213	1.2108	NaN	1	0	Median	0.85479	1.0523	6.7249	2	0	Median	1.0288	1.0452	12.592	3	0	Median	0.80219	0.77482	NaN	1	0	Median	1108000000	577830000	530180000	171920000	70199000	101720000	331750000	183840000	147910000	559980000	306570000	253410000	44364000	17223000	27141000	4992	611	4711	30852;30853;30854;30855;30856;30857;30858	42259;42260;42261;42262;42263;42264;42265;42266;42267;42268;42269	42267			11	
ASPDQNASTHTPQSSVK	1	Unmodified	1753.8231	0.82310485	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.85	7	2					1			3	2	3	2	12.173	10.891	2;3	6.6364E-12	8861	160511_QHF_FH_JSI10i_1	152.71	140.42			1.0954	1.0732	19.44	9	1	Median	1.3161	1.0732	11.623	3	0	Median	0.7045	0.84626	39.569	2	1	Median	1.0946	1.0753	2.2955	2	0	Median	1.0595	1.1213	13.344	2	0	Median	970870000	470950000	499910000	244390000	112550000	131850000	298470000	146750000	151720000	189130000	87686000	101440000	238880000	123970000	114910000	4993	2558	4712	30859;30860;30861;30862;30863;30864;30865;30866;30867;30868	42270;42271;42272;42273;42274;42275;42276;42277;42278;42279;42280;42281	42275			12	
ASPEMSDR	0	Unmodified	891.37563	0.37563091	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	7.7566	7.3559	2	0.019499	5290	160511_QHF_FH_JSI12i_1	45.68	15.605			1.285	1.1643	15.292	2	0	Median	1.2501	1.045	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3208	1.2973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	256030000	109680000	146350000	145570000	64880000	80685000	0	0	0	110470000	44802000	65665000	0	0	0	4994	3395	4713	30869;30870;30871	42282;42283	42282			2	
ASPEPQRENASPAPGTTAEEAMSR	0	Unmodified	2483.1347	0.13467894	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			32.88	31.887	3	7.3221E-06	27987	160511_QHF_FH_JSI10i_2	58.015	54.871			0.93261	0.96175	26.34	2	0	Median	1.3249	1.1586	NaN	1	0	Median	0.65649	0.79831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39117000	20730000	18386000	18747000	9531700	9215200	20370000	11199000	9171200	0	0	0	0	0	0	4995	1585	4714	30872;30873	42284;42285;42286;42287	42286			4	
ASPESQEPLIQLVQAFVR	0	Unmodified	2011.0738	0.07384023	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.8	102.81	3	9.649E-12	89561	160511_QHF_FH_JSI12i_3	141	123.52			1.8007	1.8605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8007	1.8605	NaN	1	1	Median	145450000	68224000	77225000	0	0	0	0	0	0	0	0	0	145450000	68224000	77225000	4996	2925	4715	30874	42288	42288			1	
ASPFLLQYIQEEIPDYR	0	Unmodified	2081.047	0.046956778	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	95.926	86.483	2	4.936E-24	51563	160513_QHF_FH_JSI10Kac_6	185.12	164.7			1.3537	1.432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3537	1.432	NaN	1	1	Median	80781000	24038000	56743000	0	0	0	0	0	0	0	0	0	80781000	24038000	56743000	4997	402	4716	30875;30876	42289;42290	42290			2	
ASPFLLQYIQEEIPNYR	0	Unmodified	2080.0629	0.062941193	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	95.01	87.429	3	1.6979E-05	46749	160513_QHF_FH_JSI12Kac_6	90.714	74.029			1.0452	1.1536	30.499	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80896	0.92978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3503	1.4312	NaN	1	0	Median	141770000	72495000	69278000	0	0	0	110710000	59492000	51221000	0	0	0	31059000	13002000	18057000	4998	2543	4717	30877;30878	42291;42292	42291			2	
ASPGHSPHYFAASSPTSPNALPPAR	0	Unmodified	2516.2197	0.21966962	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				44.115	42.532	4	0.0028653	34807	160511_QHF_FH_JSI9i_3	31.473	24.485			1.5941	1.2739	NaN	1	0	Median	1.5941	1.2739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29821000	11311000	18510000	29821000	11311000	18510000	0	0	0	0	0	0	0	0	0	4999	3734	4718	30879	42293;42294	42294			2	
ASPGKDNYR	1	Acetyl (K);Acetyl (Protein N-term)	1090.5043	0.5043369	254	O15131	KPNA5	Importin subunit alpha-6	yes	yes	1	1	0	1				By MS/MS	11	0				1									1	27.937	20.32	2	0.024032	8928	160513_QHF_FH_JSI12Kacf_1	39.305	28.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5000	254	4719	30880	42295	42295	135		1	
ASPGNLSQFEDILFGNNDMSASIGVVGVK	1	Unmodified	2965.4491	0.44913679	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.08	101.97	3	4.7545E-19	89758	160511_QHF_FH_JSI11i_2	100.06	93.899			0.98029	0.98576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98029	0.98576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117330000	61719000	55614000	0	0	0	0	0	0	117330000	61719000	55614000	0	0	0	5001	1557	4720	30881	42296	42296			1	
ASPLFSQHTAADK	1	Unmodified	1371.6783	0.67827852	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.11		4	5					1	3	2	4	6	1	28.351	24.171	2;3	0.00013893	20086	160511_QHF_FH_JSI11i_2	108.7	92.026			0.84369	0.81568	33.414	9	2	Median	0.79701	0.66411	23.53	2	0	Median	0.60901	0.69212	25.642	2	1	Median	1.0617	1.0367	34.341	4	1	Median	1.1112	1.1482	NaN	1	0	Median	865690000	354090000	511600000	9828100	5324000	4504000	33721000	19436000	14285000	676760000	253430000	423330000	145380000	75903000	69478000	5002	2795	4721	30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894	42297;42298;42299;42300;42301;42302;42303;42304;42305;42306;42307;42308	42302			11	
ASPLGAR	0	Unmodified	670.37622	0.37622326	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.307	32.705	2	0.042081	29269	160511_QHF_FH_JSI11i_1	46.351	20.242			0.95697	1.1367	18.527	4	0	Linear	1.1632	0.94012	NaN	1	0	Median	0.89726	1.0446	NaN	1	0	Median	1.0206	0.99789	NaN	1	0	Median	0.64944	0.69274	NaN	1	0	Median	214650000	106290000	108360000	49376000	26117000	23259000	69068000	30860000	38208000	55800000	24420000	31380000	40407000	24893000	15514000	5003	4302	4722	30895;30896;30897;30898	42309;42310	42309			2	
ASPLLPANHVTMAK	1	Unmodified	1448.781	0.78096945	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	4	3	3	43.18	42.349	2;3	1.856E-06	35987	160511_QHF_FH_JSI12i_3	131.17	124.32			0.98217	1.0467	8.7944	12	0	Median	1.1811	0.98206	21.004	2	0	Median	0.84557	1.0234	4.2532	4	0	Median	1.0802	1.0159	8.1166	3	0	Median	1.0429	1.0788	5.0883	3	0	Median	2820400000	1266000000	1554400000	226060000	99247000	126810000	412340000	226470000	185880000	908480000	409650000	498830000	1273500000	530650000	742900000	5004	4983	4723	30899;30900;30901;30902;30903;30904;30905;30906;30907;30908;30909;30910	42311;42312;42313;42314;42315;42316;42317;42318;42319;42320;42321;42322;42323;42324;42325;42326;42327;42328;42329;42330;42331;42332	42332			22	
ASPLTFTVQLSNK	1	Unmodified	1404.7613	0.76127986	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	71.675	71.093	2;3	3.3714E-15	61679	160511_QHF_FH_JSI12i_3	190.57	179.41			1.0678	1.2338	5.5905	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0678	1.2338	NaN	1	1	Median	1.3281	1.2402	NaN	1	0	Median	0.99523	1.123	NaN	1	0	Median	118060000	59359000	58701000	0	0	0	10926000	5139400	5786100	35599000	18415000	17185000	71536000	35805000	35731000	5005	940	4724	30911;30912;30913;30914;30915	42333;42334;42335;42336;42337;42338;42339	42337			7	
ASPLTHSPPDEL	0	Unmodified	1262.6143	0.61428128	4406	Q9BT09	CNPY3	Protein canopy homolog 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		43.345	42.966	2	0.0017737	37921	160511_QHF_FH_JSI10i_2	62.104	40.656			2.2951	2.2624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2951	2.2624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114260000	45736000	68523000	0	0	0	0	0	0	114260000	45736000	68523000	0	0	0	5006	4406	4725	30916;30917	42340;42341	42341			2	
ASPLVAIGQTLAR	0	Unmodified	1295.7561	0.75613491	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.65	74.865	2	0.00021386	64801	160511_QHF_FH_JSI12i_3	79.693	62.462			0.93271	0.94743	10.731	4	0	Median	1.4346	1.1422	NaN	1	0	Median	0.8541	0.96469	NaN	1	0	Median	0.97702	0.93049	NaN	1	0	Median	0.89041	0.89535	NaN	1	0	Median	168480000	85706000	82774000	49771000	19658000	30113000	40699000	21242000	19457000	41905000	24094000	17812000	36105000	20713000	15392000	5007	4984	4726	30918;30919;30920;30921	42342;42343;42344;42345;42346;42347	42347			4	
ASPNLIGATGANSLGKVMPTK	2	Acetyl (K)	2068.0987	0.098674772	2183	Q02078	MEF2A	Myocyte-specific enhancer factor 2A	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		81.053	70.379	3	0.0012928	37252	160513_QHF_FH_JSI11Kac_4	51.526	35.22			1.1353	1.1404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.1404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3655500	1701400	1954100	0	0	0	0	0	0	3655500	1701400	1954100	0	0	0	5008	2183	4727	30922	42348	42348	2298		1	
ASPNTPPGR	0	Unmodified	895.45118	0.45117911	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.7435	6.5063	2	0.013168	4419	160511_QHF_FH_JSI10i_1	56.659	17.696			0.92389	1.0844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92389	1.0844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93113000	45518000	47595000	0	0	0	93113000	45518000	47595000	0	0	0	0	0	0	5009	3860	4728	30923	42349	42349			1	
ASPNTPPGRVDENGPELLPR	0	Unmodified	2115.0709	0.070880117	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							1	2	2	1	49.298	48.575	3	8.0285E-07	42957	160511_QHF_FH_JSI11i_3	95.414	73.88			0.97976	1.0494	9.7909	6	0	Median	1.2269	1.0441	NaN	1	0	Median	0.93797	1.1383	4.619	2	0	Median	1.0465	1.0206	4.6492	2	0	Median	0.87274	0.88335	NaN	1	0	Median	437310000	224480000	212830000	95820000	48330000	47490000	158340000	81864000	76473000	146630000	76410000	70218000	36529000	17877000	18653000	5010	3860	4729	30924;30925;30926;30927;30928;30929	42350;42351;42352;42353;42354;42355;42356;42357;42358;42359;42360;42361;42362	42351			13	
ASPPGDLQNPK	1	Unmodified	1122.5669	0.56693715	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	19.888	19.256	2	0.0071763	16261	160511_QHF_FH_JSI9i_1	51.276	36.016			0.81816	0.91644	14.904	3	0	Plateau	1.1081	0.93937	NaN	1	0	Median	0.76945	0.91644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.142	1.2	NaN	1	0	Median	96380000	39094000	57286000	31152000	12726000	18425000	43756000	18077000	25679000	0	0	0	21472000	8290100	13182000	5011	117	4730	30930;30931;30932	42363	42363			1	
ASPPSGLWSPAYASH	0	Unmodified	1526.7154	0.7153923	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	2		1	60.424	59.536	2	0.00015138	53848	160511_QHF_FH_JSI10i_1	108.43	97.908			1.0102	1.1467	48.451	4	3	Median	1.4392	1.2332	NaN	1	1	Median	0.58544	0.69422	60.689	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1098	1.2455	NaN	1	0	Median	209060000	125980000	83074000	20361000	8496000	11865000	158500000	102340000	56164000	0	0	0	30192000	15148000	15045000	5012	3734	4731	30933;30934;30935;30936	42364;42365;42366;42367	42365			4	
ASPSGQNISYIHSSSESVTPR	0	Unmodified	2203.0505	0.050538606	5149	Q9NZC9	SMARCAL1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			38.336	37.33	3	5.7858E-07	32856	160511_QHF_FH_JSI10i_2	81.356	76.555			1.8247	1.8861	2.9045	2	1	Median	2.1154	1.8477	NaN	1	1	Median	1.574	1.9252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57597000	18494000	39104000	18919000	5387000	13532000	38678000	13107000	25572000	0	0	0	0	0	0	5013	5149	4732	30937;30938;30939	42368;42369;42370;42371	42371			4	
ASPSLERPEK	1	Acetyl (Protein N-term)	1154.5932	0.5931519	2449	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1.25	0.433	3	1								2		1	1	22.627	21.923	2	9.5962E-05	18825	160511_QHF_FH_JSI9i_1	90.149	68.063			0.6094	0.50283	39.456	4	2	Median	0.61037	0.50283	33.086	2	1	Median	NaN	NaN	NaN	0	0	Median	0.35223	0.3499	NaN	1	1	Median	0.76125	0.81182	NaN	1	0	Median	389880000	259240000	130640000	162560000	108850000	53711000	0	0	0	134040000	97856000	36188000	93269000	52527000	40742000	5014	2449	4733	30940;30941;30942;30943	42372;42373;42374	42374			2	
ASPSPQPSSQPLQIHR	0	Unmodified	1728.8907	0.89073091	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	30.789	30.724	3	0.00045556	26617	160511_QHF_FH_JSI9i_2	59.261	51.084			0.92563	0.9509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92563	0.9509	NaN	1	0	Median	64300000	26562000	37737000	0	0	0	0	0	0	0	0	0	64300000	26562000	37737000	5015	4848	4734	30944;30945	42375;42376	42375			1	
ASPSTAGETPSGVK	1	Unmodified	1287.6307	0.63065962	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	16.769	14.991	2	1.8756E-07	12553	160511_QHF_FH_JSI10i_1	177.44	137.09			0.60512	0.63789	32.486	5	3	Median	1.3799	1.1272	NaN	1	0	Median	0.45715	0.54629	NaN	1	1	Median	0.60512	0.59963	NaN	1	1	Median	0.74634	0.79635	31.376	2	1	Median	493600000	280830000	212770000	130090000	58384000	71708000	130280000	92261000	38017000	111880000	77044000	34837000	121350000	53146000	68207000	5016	5320	4735	30946;30947;30948;30949;30950	42377;42378;42379;42380;42381;42382;42383	42380			7	
ASPVPAPSSGLHAAVR	0	Unmodified	1515.8158	0.81577505	5196	Q9P206	KIAA1522	Uncharacterized protein KIAA1522	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		36.956	36.227	3	0.0050166	30170	160511_QHF_FH_JSI10i_3	31.7	27.52			1.1599	1.1895	22.55	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2467	1.3952	NaN	1	0	Median	1.0792	1.0142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59987000	24639000	35348000	0	0	0	30875000	11782000	19094000	29112000	12858000	16254000	0	0	0	5017	5196	4736	30951;30952	42384	42384			1	
ASQAEISSLQSVR	0	Unmodified	1374.7103	0.71030693	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		48.414	37.899	2	0.0067967	22402	160513_QHF_FH_JSI11Kac_4	57.019	48.065			0.98215	0.96178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98215	0.96178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2912400	1430000	1482300	0	0	0	0	0	0	2912400	1430000	1482300	0	0	0	5018	2269	4737	30953	42385	42385			1	
ASQAGQTALMLAVSHGR	0	Unmodified	1696.8679	0.86788698	3010	Q63ZY3;Q14678	KANK2;KANK1	KN motif and ankyrin repeat domain-containing protein 2;KN motif and ankyrin repeat domain-containing protein 1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			59.504	51.075	3	0.00023216	28136	160513_QHF_FH_JSI10Kac_6	71.073	61.115			0.62946	0.74148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62946	0.74148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35600000	16268000	19332000	0	0	0	35600000	16268000	19332000	0	0	0	0	0	0	5019	3010	4738	30954	42386	42386			1	
ASQDPFPAAIILK	1	Unmodified	1369.7606	0.76055158	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	84.954	84.373	2	2.4807E-10	76920	160511_QHF_FH_JSI11i_1	147.91	130.09			0.96126	0.94344	8.6998	8	0	Median	1.0424	0.87507	2.8923	2	0	Median	0.79509	0.94344	4.1288	2	0	Median	0.95844	0.94997	9.2716	2	0	Median	0.97284	1.0508	8.9256	2	0	Median	750950000	371620000	379330000	161500000	75695000	85808000	194650000	100360000	94289000	226290000	111700000	114590000	168510000	83866000	84641000	5020	4154	4739	30955;30956;30957;30958;30959;30960;30961;30962	42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401;42402;42403;42404;42405;42406;42407;42408;42409;42410;42411;42412;42413;42414	42388			28	
ASQEDANEIK	1	Unmodified	1103.5095	0.50948185	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.9492	9.5687	2	2.571E-10	7255	160511_QHF_FH_JSI11i_1	140.49	97.402			0.6393	0.69016	19.025	4	0	Linear	1.0186	0.83901	NaN	1	0	Median	0.61394	0.71052	NaN	1	0	Median	1.1528	1.1225	NaN	1	0	Median	0.82638	0.83717	NaN	1	0	Median	434160000	236320000	197850000	100040000	46894000	53141000	121020000	70822000	50200000	99332000	48343000	50989000	113770000	70259000	43515000	5021	2988	4740	30963;30964;30965;30966	42415;42416;42417;42418;42419;42420	42415			6	
ASQEEQIAR	0	Unmodified	1030.5043	0.5043369	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		8.9203	8.5563	2	0.051415	6304	160511_QHF_FH_JSI11i_1	35.511	15.997			1.8802	2.042	9.5427	3	0	Plateau	2.0791	1.7124	NaN	1	0	Median	1.7471	2.0688	NaN	1	0	Median	2.0236	1.9252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	213730000	80109000	133620000	67370000	24358000	43012000	73979000	28425000	45554000	72384000	27325000	45059000	0	0	0	5022	416	4741	30967;30968;30969	42421	42421			1	
ASQEPSPK	1	Unmodified	842.4134	0.41339662	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.09	3.45	10					1				3	2	3	3	7.4935	6.4518	2	0.00076734	1911	160513_QHF_FH_JSI11Kac_3	116.25	72.436			1.1776	1.1511	46.818	10	1	Median	1.3687	1.1094	24.362	2	0	Median	0.9957	1.1896	30.646	2	0	Median	1.2291	1.2071	59.258	3	1	Median	1.0326	1.0977	70.24	3	0	Median	7411700000	3097200000	4314500000	1662300000	784640000	877690000	1542900000	756060000	786800000	1702600000	610380000	1092200000	2503900000	946100000	1557800000	5023	4010	4742	30970;30971;30972;30973;30974;30975;30976;30977;30978;30979;30980	42422;42423;42424;42425;42426;42427;42428;42429;42430;42431	42428			10	
ASQEPSPKPGTEVIPAAPR	1	Unmodified	1931.0112	0.011239973	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.634	7	5	1							2	3	4	4	38.791	38.161	2;3	5.8564E-11	34146	160511_QHF_FH_JSI10i_1	121.74	104.25			0.91299	0.99889	12.821	13	5	Median	1.2535	1.0578	2.6373	2	0	Median	0.83683	0.99889	11.965	3	1	Plateau	0.88771	0.87721	2.1038	4	2	Median	0.96567	1.0251	15.734	4	2	Median	1771600000	913100000	858510000	216870000	105190000	111680000	350740000	176690000	174050000	547050000	282360000	264680000	656960000	348870000	308090000	5024	4010	4743	30981;30982;30983;30984;30985;30986;30987;30988;30989;30990;30991;30992;30993	42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444;42445;42446;42447;42448;42449;42450	42440			19	
ASQGPVYK	1	Unmodified	848.43922	0.43921744	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			2	4	3	3	10.62	6.5014	2	0.0010017	6718	160511_QHF_FH_JSI12i_1	95.352	48.689			0.92877	0.88654	9.7058	12	0	Linear	1.206	1.0204	9.636	2	0	Median	0.82032	0.89392	9.8523	4	0	Linear	0.91422	0.89137	16.238	3	0	Plateau	0.85144	0.90576	6.2243	3	0	Plateau	3508700000	1738900000	1769800000	844350000	377140000	467210000	896370000	446750000	449630000	851990000	404720000	447270000	915980000	510300000	405680000	5025	5540	4744	30994;30995;30996;30997;30998;30999;31000;31001;31002;31003;31004;31005	42451;42452;42453;42454;42455;42456;42457;42458;42459;42460;42461;42462;42463;42464;42465	42453			15	
ASQGPVYKGVCK	2	Acetyl (K)	1334.6653	0.66527099	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		37.438	28.542	2	0.026953	16609	160513_QHF_FH_JSI11Kac_3	54.608	37.976			0.23505	0.22263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23505	0.22263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2845700	1876200	969520	0	0	0	824050	0	824050	2021700	1876200	145480	0	0	0	5026	5540	4745	31006;31007	42466;42467	42466	3474		2	
ASQHQVLFLLSDVAHAK	1	Unmodified	1863.0003	0.0002813566	4732	Q9H582	ZNF644	Zinc finger protein 644	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	76.476	69.67	4	9.4626E-06	63385	160511_QHF_FH_JSI12i_3	85.636	75.536			0.8786	0.77005	42.412	5	0	Median	0.8786	0.76597	NaN	1	0	Median	0.38733	0.45422	NaN	1	0	Median	1.06	1.0232	NaN	1	0	Median	1.0102	1.0514	44.044	2	0	Median	208700000	136860000	71833000	82261000	48782000	33479000	68379000	55788000	12591000	22414000	10714000	11700000	35643000	21580000	14063000	5027	4732	4746	31008;31009;31010;31011;31012	42468;42469;42470;42471;42472;42473	42471			5	
ASQKDFENSMNQVK	2	Acetyl (K)	1666.7621	0.7620845	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	52.551	43.429	2	0.033146	23397	160513_QHF_FH_JSI12Kac_3	52.693	36.802			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1473500	1473500	0	0	0	0	0	0	0	0	0	0	1473500	1473500	0	5028	538	4747	31013	42474	42474	277		1	
ASQKPQPNFPSPEYMIFDHEFTK	2	Unmodified	2737.2846	0.28463764	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	81.974	81.546	3;4	3.1752E-09	72584	160511_QHF_FH_JSI11i_3	85.467	82.004			1.0465	0.98428	16.157	3	1	Plateau	1.1967	0.96978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89316	0.85272	20.292	2	1	Median	NaN	NaN	NaN	0	0	Median	506640000	255840000	250800000	38747000	15733000	23014000	0	0	0	467900000	240110000	227790000	0	0	0	5029	446	4748	31014;31015;31016;31017;31018;31019	42475;42476;42477;42478;42479;42480;42481	42476			7	
ASQKPQPNFPSPEYMIFDHEFTK	2	Oxidation (M)	2753.2796	0.27955226	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		73.29	72.57	4	0.0015407	60989	160511_QHF_FH_JSI10i_3	40.404	36.989			0.81	0.85432	31.716	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91678	1.0691	NaN	1	0	Median	0.71565	0.68269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75470000	49731000	25739000	0	0	0	32906000	20592000	12314000	42564000	29139000	13425000	0	0	0	5030	446	4748	31020;31021	42482;42483;42484	42484		176	3	
ASQLSVQQNK	1	Unmodified	1101.5778	0.57783619	484	O75152;A0A1B0GTU1	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	13.107	11.305	2	1.4992E-07	9031	160511_QHF_FH_JSI9i_1	119.75	95.978			0.95647	0.90548	23.611	5	0	Median	1.0868	0.88066	NaN	1	0	Median	1.2726	1.4773	NaN	1	0	Median	0.88971	0.85558	8.0161	2	0	Median	0.95647	0.9977	NaN	1	0	Median	279200000	120640000	158560000	50570000	24593000	25977000	70839000	28727000	42112000	78635000	32659000	45976000	79156000	34658000	44499000	5031	484	4749	31022;31023;31024;31025;31026	42485;42486;42487;42488;42489;42490	42490			6	
ASQLVDVEK	1	Unmodified	987.52368	0.52367535	2210	Q03468;P0DP91	ERCC6	DNA excision repair protein ERCC-6	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	26.826	26.12	2	0.0011729	22608	160511_QHF_FH_JSI9i_1	79.489	48.853			1.3059	1.0562	22.178	3	3	Plateau	1.3059	1.0562	NaN	1	1	Median	0.63606	0.74084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0827	1.1142	NaN	1	1	Median	145230000	69602000	75625000	49255000	16290000	32964000	48232000	31674000	16558000	0	0	0	47740000	21637000	26102000	5032	2210	4750	31027;31028;31029	42491;42492;42493	42493			3	
ASQLVGIEKK	2	Acetyl (K)	1113.6394	0.63937381	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		47.702	37.262	2	0.015563	22050	160513_QHF_FH_JSI11Kac_4	65.5	35.757			0.07891	0.077848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.07891	0.077848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2416600	2313600	102930	0	0	0	0	0	0	2416600	2313600	102930	0	0	0	5033	4896	4751	31030;31031	42494;42495	42495	3259		2	
ASQLVSEK	1	Unmodified	860.46035	0.46034682	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	10.744	10.332	2	0.0016882	7936	160511_QHF_FH_JSI11i_1	86.136	50.091			0.95939	1.027	12.075	5	0	Median	1.2785	1.0625	NaN	1	0	Median	0.77891	0.93483	21.144	2	0	Median	0.97013	0.95915	NaN	1	0	Median	0.95939	1.027	NaN	1	0	Median	980060000	488090000	491970000	202870000	90666000	112210000	283900000	152300000	131610000	228880000	119730000	109150000	264400000	125400000	139000000	5034	4331	4752	31032;31033;31034;31035;31036	42496;42497;42498;42499	42496			4	
ASQNLVVLAR	0	Unmodified	1069.6244	0.62439245	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.95		3	1				3	4		1	3	3	4	48.052	41.076	2	3.3185E-08	22865	160513_QHF_FH_JSI11Kac_5	134.25	88.118			0.83447	0.96132	31.497	11	1	Median	1.2836	1.0758	NaN	1	0	Median	0.57139	0.7056	19.527	3	0	Plateau	0.46281	0.46999	46.125	3	1	Plateau	0.73037	0.77621	33.533	4	0	Median	434790000	254860000	179930000	10534000	4560800	5972800	102020000	63964000	38051000	158650000	93363000	65286000	163590000	92972000	70618000	5035	4704	4753	31037;31038;31039;31040;31041;31042;31043;31044;31045;31046;31047	42500;42501;42502;42503;42504;42505;42506;42507;42508	42507			8	
ASQNRDPAATSVAAAR	0	Acetyl (Protein N-term)	1626.8074	0.80739521	164	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	2										1	1		23.017	22.805	2	0.00016612	19731	160511_QHF_FH_JSI11i_1	77.204	51.987			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5036	164	4754	31048;31049	42509;42510	42509			2	
ASQPDLVDTPTSSKPQPK	2	Unmodified	1894.9636	0.96362108	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.526	29.928	3	2.6383E-05	26532	160511_QHF_FH_JSI11i_1	81.157	66.002			0.89875	0.91458	32.663	4	0	Median	0.8445	0.69963	NaN	1	0	Median	0.69075	0.82405	NaN	1	0	Median	1.5654	1.4908	NaN	1	0	Median	0.95648	1.0151	NaN	1	0	Median	345520000	173340000	172180000	62953000	30676000	32277000	67755000	46095000	21660000	106300000	41170000	65125000	108520000	55395000	53120000	5037	1576	4755	31050;31051;31052;31053	42511;42512;42513;42514;42515;42516;42517;42518;42519	42511			9	
ASQQEIQHIVNR	0	Unmodified	1421.7375	0.73752473	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	26.983	26.965	3	3.9587E-05	23117	160511_QHF_FH_JSI11i_3	82.543	77.75			1.3284	1.2861	29.131	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6845	1.5803	NaN	1	0	Median	1.0476	1.0467	NaN	1	0	Median	128110000	62087000	66021000	0	0	0	0	0	0	66365000	31223000	35142000	61743000	30864000	30879000	5038	21	4756	31054;31055	42520;42521	42520			2	
ASQQSNQIQTQR	0	Unmodified	1387.6804	0.68040378	2237	Q05D32	CTDSPL2	CTD small phosphatase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	7.7212	7.3205	2	3.4219E-07	5245	160511_QHF_FH_JSI12i_1	110.66	90.875			0.92701	0.84383	8.4424	2	2	Median	1.0735	0.89574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80049	0.79493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50223000	33582000	16641000	23486000	12459000	11026000	0	0	0	26738000	21123000	5614800	0	0	0	5039	2237	4757	31056;31057;31058;31059;31060;31061;31062	42522;42523;42524;42525;42526;42527;42528	42525			7	
ASQSRPNSSALETLGGEK	1	Unmodified	1830.9072	0.90716883	607	O94804	STK10	Serine/threonine-protein kinase 10	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.936	30.531	3	0.01464	24919	160511_QHF_FH_JSI9i_3	40.856	29.594			1.17	0.97195	NaN	1	1	Median	1.17	0.97195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16931000	6434600	10497000	16931000	6434600	10497000	0	0	0	0	0	0	0	0	0	5040	607	4758	31063	42529;42530	42530			2	
ASQVSNSDHKSSK	2	Acetyl (K)	1415.6641	0.66408501	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	5.6227	-1.9543	3	4.207E-06	1926	160513_QHF_FH_JSI11Kac_4	100.54	79.589			0.33387	0.33165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33387	0.33165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20458000	15222000	5236200	0	0	0	0	0	0	18571000	13335000	5236200	1887400	1887400	0	5041	4157	4759	31064;31065	42531;42532;42533	42532	3060		3	
ASREEILAQAK	1	Unmodified	1214.6619	0.66190017	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							5	3	3	2	20.351	19.677	2;3	1.1942E-06	16393	160511_QHF_FH_JSI11i_3	96.745	75.113			0.9471	1.0113	27.18	12	1	Median	0.96016	0.7884	38.203	4	1	Median	0.9131	1.1361	5.2708	3	0	Median	1.2939	1.2281	18.881	3	0	Plateau	0.94741	0.96629	2.6144	2	0	Median	3824600000	1808800000	2015700000	295840000	134020000	161820000	981820000	511140000	470670000	2078000000	957510000	1120500000	468920000	206130000	262790000	5042	1436	4760	31066;31067;31068;31069;31070;31071;31072;31073;31074;31075;31076;31077;31078	42534;42535;42536;42537;42538;42539;42540;42541;42542;42543;42544;42545;42546;42547;42548;42549;42550;42551;42552	42537			19	
ASSAASSEHFEK	1	Acetyl (Protein N-term)	1291.5681	0.56805936	5274	Q9UEU0	VTI1B	Vesicle transport through interaction with t-SNAREs homolog 1B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.943	20.428	2	8.6579E-08	17808	160511_QHF_FH_JSI12i_1	69.346	64.93			1.6495	1.3684	20.818	3	0	Plateau	1.6495	1.3684	NaN	1	0	Median	0.93904	1.0949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5798	1.6598	NaN	1	0	Median	154710000	54986000	99721000	44385000	19169000	25216000	41116000	18293000	22823000	26860000	0	26860000	42347000	17525000	24822000	5043	5274	4761	31079;31080;31081;31082	42553;42554;42555;42556;42557	42554			5	
ASSAEGDEGTVVALAGVLQSGFQELSLNK	1	Acetyl (Protein N-term)	2918.4509	0.45091093	3089	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		103.75	103.64	3	2.1357E-22	94380	160511_QHF_FH_JSI11i_1	78.45	71.257			1.1886	1.0405	15.363	2	0	Median	1.1627	0.93341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.215	1.1599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79614000	32694000	46920000	39649000	16555000	23093000	0	0	0	39966000	16139000	23827000	0	0	0	5044	3089	4762	31083;31084	42558;42559	42558			2	
ASSAGVLVS	0	Unmodified	789.42323	0.42323303	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	29.026	28.433	1	0.022033	24668	160511_QHF_FH_JSI9i_1	48.787	33.155			0.9433	0.96735	4.6796	4	0	Median	1.1565	0.96735	NaN	1	0	Median	0.83905	0.96736	NaN	1	0	Median	1.0285	0.99819	NaN	1	0	Median	0.86519	0.89447	NaN	1	0	Median	341550000	169800000	171750000	79062000	35691000	43370000	85358000	48215000	37144000	81656000	35685000	45971000	95471000	50207000	45264000	5045	5313	4763	31085;31086;31087;31088	42560;42561	42561			0	
ASSAQSGGSSGGPAVPTVQR	0	Acetyl (Protein N-term)	1841.8868	0.88676774	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.75	5			1	1					2	1	2	2	41.81	38.333	2	2.0344E-22	34977	160511_QHF_FH_JSI11i_1	202.63	195.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5046	3213	4764	31089;31090;31091;31092;31093;31094;31095	42562;42563;42564;42565;42566;42567;42568;42569;42570;42571	42563			10	
ASSAYLAAAEDKDR	1	Unmodified	1466.7001	0.70013617	4554	Q9BYX2	TBC1D2	TBC1 domain family member 2A	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				13.38	12.469	3	0.042153	9671	160511_QHF_FH_JSI9i_1	19.678	1.7605			1.2353	1.01	NaN	1	0	Median	1.2353	1.01	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184940000	80093000	104850000	184940000	80093000	104850000	0	0	0	0	0	0	0	0	0	5047	4554	4765	31096	42572	42572			1	
ASSDIQVK	1	Acetyl (Protein N-term)	888.45526	0.45526144	1105	P16949	STMN1	Stathmin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.25	7			3	3					2	4	4	3	30.322	26.05	1;2	1.6399E-05	23059	160511_QHF_FH_JSI9i_1	75.109	57.342			1.0413	1.0647	6.4007	13	0	Median	1.2354	1.0074	10.291	2	0	Median	0.93139	1.0937	7.0406	4	0	Median	1.0899	1.0478	4.5037	4	0	Median	0.95726	1.0207	7.1725	3	0	Plateau	6442900000	3007300000	3435700000	1885900000	782450000	1103400000	1790300000	830630000	959650000	1384100000	646470000	737610000	1382700000	747710000	635000000	5048	1105	4766	31097;31098;31099;31100;31101;31102;31103;31104;31105;31106;31107;31108;31109	42573;42574;42575;42576;42577;42578;42579;42580;42581;42582;42583;42584;42585;42586;42587;42588;42589	42583			15	
ASSDIQVKELEK	2	Acetyl (K);Acetyl (Protein N-term)	1429.73	0.73003931	1105	P16949	STMN1	Stathmin	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						1	1	3	70.764	61.341	2	4.9054E-06	24449	160513_QHF_FH_JSI10Kac_1	42.001	38.745			0.54891	0.58267	30.526	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95174	1.0729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64255	0.67965	21.772	2	0	Median	13952000	7995600	5956900	0	0	0	3352200	1522300	1829900	0	0	0	10600000	6473200	4127000	5049	1105	4767	31110;31111;31112;31113;31114	42590;42591;42592;42593;42594;42595	42593	957		6	
ASSEGGTAAGAGLDSLHK	1	Unmodified	1627.7802	0.7801774	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.7	7	7	1				5	1		3	6	5	7	31.015	28.162	2;3	6.9315E-41	25377	160511_QHF_FH_JSI12i_1	159.52	138.74			0.96387	1.0471	19.762	16	9	Median	1.4745	1.2616	NaN	1	1	Median	0.86478	1.0392	19.642	4	3	Median	1.0439	1.0456	26.615	5	2	Median	0.96387	1.0125	14.575	6	3	Median	1915600000	1037900000	877760000	256860000	141420000	115450000	533280000	332290000	200990000	579980000	293900000	286080000	545500000	270250000	275240000	5050	255	4768	31115;31116;31117;31118;31119;31120;31121;31122;31123;31124;31125;31126;31127;31128;31129;31130;31131;31132;31133;31134;31135	42596;42597;42598;42599;42600;42601;42602;42603;42604;42605;42606;42607;42608;42609;42610;42611;42612;42613;42614;42615;42616;42617;42618;42619;42620;42621;42622	42604			27	
ASSEGTIPQVQREEPAPEEEEPLLLQRPER	0	Unmodified	3413.7063	0.70629077	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				64.161	63.228	4	0.057156	55637	160511_QHF_FH_JSI9i_2	15.29	13.272			1.0817	0.9516	NaN	1	0	Median	1.0817	0.9516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45963000	24106000	21858000	45963000	24106000	21858000	0	0	0	0	0	0	0	0	0	5051	4472	4769	31136	42623	42623			1	
ASSELFSQK	1	Unmodified	995.49238	0.49237523	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		32.866	23.681	2	0.0054611	14906	160513_QHF_FH_JSI11Kac_4	65.305	36.387			0.77751	0.76232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77751	0.76232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6216900	3264000	2952900	0	0	0	0	0	0	6216900	3264000	2952900	0	0	0	5052	2170	4770	31137	42624;42625	42625			2	
ASSELFSQKTK	2	Acetyl (K)	1266.6456	0.6455814	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		44.882	34.589	2	0.00088561	20660	160513_QHF_FH_JSI11Kac_4	85.958	69.12			0.27227	0.26547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27227	0.26547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5674000	4394000	1280000	0	0	0	0	0	0	5674000	4394000	1280000	0	0	0	5053	2170	4771	31138	42626	42626	2290		1	
ASSEMALYQK	1	Unmodified	1126.5329	0.53285983	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		27.926	27.329	2	0.0001208	23691	160511_QHF_FH_JSI9i_1	96.936	73.167			1.2417	1.4038	22.136	3	2	Plateau	1.8862	1.5401	NaN	1	1	Median	1.2104	1.4038	NaN	1	0	Median	2.2042	2.1392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	332530000	128260000	204270000	130650000	50958000	79689000	103240000	46417000	56826000	98638000	30883000	67755000	0	0	0	5054	2625	4772	31139;31140;31141;31142	42627;42628;42629;42630	42630			4	
ASSEMALYQKK	2	Acetyl (K)	1296.6384	0.63838754	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	46.392	36.407	2	4.0821E-06	21509	160513_QHF_FH_JSI11Kac_4	109.66	99.71			0.4681	0.46624	53.136	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1377	1.3127	20.201	2	0	Median	0.45358	0.44819	NaN	1	0	Median	1.0641	1.1433	NaN	1	0	Median	14135000	8666500	5468000	0	0	0	4059600	1713800	2345800	7925700	5907200	2018500	2149100	1045400	1103700	5055	2625	4773	31143;31144;31145;31146	42631;42632;42633;42634;42635;42636	42633	2592		6	
ASSESSYPTAESQAEAER	0	Unmodified	1898.813	0.81299368	2855	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	22.622	22.295	2	0.00034263	19642	160511_QHF_FH_JSI12i_1	88.552	63.699			0.8998	0.90446	7.0931	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9791	0.95098	NaN	1	1	Median	0.82692	0.86022	NaN	1	1	Median	36617000	17500000	19117000	0	0	0	0	0	0	16940000	5685700	11254000	19677000	11814000	7863100	5056	2855	4774	31147;31148;31149	42637;42638;42639	42639			3	
ASSEVAR	0	Acetyl (Protein N-term)	760.37153	0.37153181	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	10.325	9.9418	1	0.020842	7824	160511_QHF_FH_JSI12i_1	39.021	7.4426			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5057	5192	4775	31150	42640	42640			1	
ASSGAGDPLDSK	1	Acetyl (Protein N-term)	1145.52	0.52004654	5529	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	yes	yes	0	1	0	0	By matching	By MS/MS		By MS/MS	4.33	4.71	2			1						1	1		1	31.28	30.479	2	0.0012416	27129	160511_QHF_FH_JSI10i_1	63.624	57.703			0.96062	0.94386	22.048	2	1	Median	1.3455	1.1031	NaN	1	0	Median	0.68583	0.80761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159450000	67058000	92395000	70299000	33150000	37149000	89154000	33908000	55246000	0	0	0	0	0	0	5058	5529	4776	31151;31152;31153	42641;42642	42641			2	
ASSGGGGGGLMEEMNK	1	Unmodified	1480.6286	0.62862749	5318	Q9UI08	EVL	Ena/VASP-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	35.263	34.846	2	7.7307E-05	31296	160511_QHF_FH_JSI11i_1	77.644	66.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5059	5318	4777	31154;31155	42643;42644	42643			2	
ASSGLLYPLER	0	Unmodified	1204.6452	0.64518747	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.13		4	1				2	2		2	4	1	2	64.881	59.802	2	4.9591E-18	51823	160511_QHF_FH_JSI11i_2	160.36	146.15			1.0165	1.0183	8.9352	7	0	Plateau	1.2705	1.071	6.1299	2	0	Median	0.91573	1.1081	11.812	2	0	Median	0.97455	1.0028	NaN	1	0	Median	1.0272	1.1316	13.892	2	0	Median	1447800000	745750000	702050000	228410000	97286000	131120000	361570000	205760000	155810000	566220000	287880000	278330000	291610000	154820000	136790000	5060	2277	4778	31156;31157;31158;31159;31160;31161;31162;31163;31164	42645;42646;42647;42648;42649;42650;42651;42652;42653;42654;42655;42656;42657	42653			13	
ASSHSSQTQGGGSVTK	1	Unmodified	1517.707	0.70701246	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.71	6.41	6	9	8			3	6	9	7	10	13	13	12	4.9886	0.10699	2;3	1.0904E-290	2332	160511_QHF_FH_JSI10i_1	377.84	354.95			0.95188	1.0225	20.394	46	4	Median	1.1788	1.0524	32.793	9	1	Median	0.85557	0.99021	16.947	13	2	Median	1.031	1.0148	14.556	13	1	Median	0.9507	1.0347	15.858	11	0	Median	43383000000	21587000000	21795000000	5644200000	2794400000	2849900000	10631000000	5833500000	4797400000	16834000000	7694900000	9139600000	10273000000	5264500000	5008400000	5061	791	4779	31165;31166;31167;31168;31169;31170;31171;31172;31173;31174;31175;31176;31177;31178;31179;31180;31181;31182;31183;31184;31185;31186;31187;31188;31189;31190;31191;31192;31193;31194;31195;31196;31197;31198;31199;31200;31201;31202;31203;31204;31205;31206;31207;31208;31209;31210;31211;31212	42658;42659;42660;42661;42662;42663;42664;42665;42666;42667;42668;42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680;42681;42682;42683;42684;42685;42686;42687;42688;42689;42690;42691;42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727;42728	42683			71	
ASSHSSQTQGGGSVTKK	2	Unmodified	1645.802	0.80197548	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			5.6	5.2			4						1	4	1			4.6361	1.9519	2;3;4	9.1587E-74	2074	160511_QHF_FH_JSI9i_3	210.91	184.23			1.6182	1.3044	20.401	3	0	Plateau	1.6182	1.3044	20.401	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	530950000	182650000	348290000	530950000	182650000	348290000	0	0	0	0	0	0	0	0	0	5062	791	4780	31213;31214;31215;31216;31217	42729;42730;42731;42732;42733;42734	42733			6	
ASSHSSQTQGGGSVTKK	2	Acetyl (K)	1687.8125	0.81254017	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.656						1	4	6		1	4	4	2	7.3033	-1.7162	2;3	1.994E-31	2444	160513_QHF_FH_JSI11Kac_5	167.32	151.79			0.9382	0.97655	11.299	11	0	Median	1.1113	0.92635	NaN	1	0	Median	0.92643	1.1001	12.017	4	0	Median	0.96845	0.96578	10.545	4	0	Median	0.84095	0.93087	6.7751	2	0	Median	384370000	203990000	180380000	5185300	2607000	2578300	100690000	53855000	46833000	191180000	100670000	90511000	87318000	46859000	40459000	5063	791	4780	31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228	42735;42736;42737;42738;42739;42740;42741;42742	42741	413		8	
ASSIIDELFQDR	0	Unmodified	1392.6885	0.68850885	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	91.75	91.427	2	0.00010231	79313	160511_QHF_FH_JSI12i_3	89.403	79.45			1.8771	1.8276	32.141	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.75118	0.91375	NaN	1	1	Median	2.045	1.9892	NaN	1	0	Median	1.2582	1.3237	8.3597	2	0	Median	180060000	78421000	101640000	0	0	0	36174000	18458000	17716000	63132000	20991000	42141000	80757000	38971000	41786000	5064	981	4781	31229;31230;31231;31232	42743;42744;42745;42746;42747	42746			4	
ASSKLAIMK	2	Acetyl (K)	989.55795	0.55795237	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	1	0	0	1		By MS/MS	By matching		14	0							2				1	1		52.824	42.175	2	0.025962	23582	160513_QHF_FH_JSI10Kac_4	49.16	33.498			1.3031	1.3983	41.778	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88943	1.0407	NaN	1	0	Median	1.909	1.8789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12296000	4905800	7389900	0	0	0	5392900	2275000	3117900	6902800	2630800	4272000	0	0	0	5065	1430	4782	31233;31234	42748	42748	1390		1	
ASSLGEIDESSELR	0	Unmodified	1491.7053	0.70528113	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.776	46.098	2	4.4469E-10	41405	160511_QHF_FH_JSI10i_1	151.26	131.5			0.91351	1.005	15.328	4	1	Median	1.3444	1.104	NaN	1	0	Median	0.88939	1.0306	NaN	1	0	Median	0.79123	0.77547	NaN	1	0	Median	0.93829	0.98011	NaN	1	1	Median	358300000	193190000	165110000	70626000	29181000	41445000	101140000	61349000	39788000	110230000	62553000	47680000	76301000	40102000	36199000	5066	2732	4783	31235;31236;31237;31238	42749;42750;42751;42752;42753;42754;42755	42753			7	
ASSLIEEAK	1	Unmodified	946.49713	0.49712625	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.779	23.459	2	0.0018561	20784	160511_QHF_FH_JSI12i_1	76.17	46.094			0.6987	0.6957	12.708	3	3	Median	NaN	NaN	NaN	0	0	Median	0.72685	0.84602	NaN	1	1	Median	0.6987	0.66661	NaN	1	1	Median	0.67102	0.6957	NaN	1	1	Median	485330000	257200000	228130000	0	0	0	138110000	76673000	61438000	153510000	92612000	60893000	193710000	87911000	105800000	5067	5616	4784	31239;31240;31241	42756;42757;42758	42757			3	
ASSLIEEAKK	2	Unmodified	1074.5921	0.59208927	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.86	0.35		1	6							1		2	4	18.795	18.812	2;3	2.0107E-06	15145	160511_QHF_FH_JSI12i_3	126.31	107.22			2.9073	2.7208	103.17	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9073	2.7208	7.0726	2	2	Median	1.2835	1.2922	124.87	4	4	Median	929330000	359580000	569750000	0	0	0	0	0	0	146660000	34550000	112110000	782670000	325030000	457640000	5068	5616	4785	31242;31243;31244;31245;31246;31247;31248	42759;42760;42761;42762;42763;42764;42765	42763			7	
ASSLISLLK	1	Unmodified	930.57498	0.57498264	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.88		4	4					1	2	3	2	3	3	73.631	70.358	2	3.5449E-06	63059	160511_QHF_FH_JSI11i_3	122.52	84.958			0.99431	0.88182	11.001	11	0	Median	1.1026	0.87286	7.1727	3	0	Median	0.71444	0.84967	0.78058	2	0	Median	1.1061	1.0765	16.403	3	0	Plateau	0.99431	1.0151	10.852	3	0	Median	2720100000	1296200000	1423900000	537990000	214830000	323160000	426480000	229150000	197340000	689850000	335490000	354350000	1065800000	516780000	549040000	5069	2084	4786	31249;31250;31251;31252;31253;31254;31255;31256;31257;31258;31259	42766;42767;42768;42769;42770;42771;42772;42773;42774;42775;42776;42777;42778;42779;42780;42781;42782;42783;42784;42785	42767			20	
ASSLNEDPEGSR	0	Acetyl (Protein N-term)	1302.5688	0.56878765	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	28.829	28.266	2	0.017751	25317	160511_QHF_FH_JSI12i_1	41.704	37.406			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5070	5647	4787	31260	42786	42786			1	
ASSLSDPVER	0	Unmodified	1059.5197	0.51965261	4528	Q9BXW6	OSBPL1A	Oxysterol-binding protein-related protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.718	21.449	2	0.016667	18581	160511_QHF_FH_JSI10i_1	44.704	21.181			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5071	4528	4788	31261	42787	42787			1	
ASSMREDLVEK	1	Unmodified	1263.6129	0.61290107	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.269	20.269	3	0.027545	17011	160511_QHF_FH_JSI11i_3	32.624	15.682			0.52104	0.48395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52104	0.48395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31530000	21906000	9623900	0	0	0	0	0	0	31530000	21906000	9623900	0	0	0	5072	2637	4789	31262	42788	42788			1	
ASSNLGIIHQMK	1	Unmodified	1297.6813	0.6812554	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	33.961	33.906	3	0.014331	28673	160511_QHF_FH_JSI12i_3	34.179	24.99			0.76029	0.71076	28.926	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96107	0.87207	NaN	1	0	Median	0.60145	0.57928	NaN	1	0	Median	65813000	38689000	27124000	0	0	0	0	0	0	34841000	17154000	17686000	30972000	21535000	9437400	5073	3974	4790	31263;31264	42789	42789			1	
ASSQVNVEGQSR	0	Unmodified	1260.6058	0.60584185	352	O43665	RGS10	Regulator of G-protein signaling 10	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	12.061	8.9281	2	8.3714E-08	8074	160511_QHF_FH_JSI12i_1	137.78	103.69			0.81867	0.75766	20.99	5	0	Median	0.81867	0.66152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79976	0.76131	24.361	2	0	Median	0.8631	0.89191	23.069	2	0	Median	172280000	93685000	78597000	60860000	30387000	30473000	0	0	0	52777000	30796000	21981000	58645000	32502000	26143000	5074	352	4791	31265;31266;31267;31268;31269	42790;42791;42792;42793	42791			4	
ASSSAGTDPQLLLYR	0	Unmodified	1577.8049	0.80493559	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	58.328	57.61	2	3.4781E-07	52218	160511_QHF_FH_JSI11i_1	133.07	115.64			0.98438	1.0317	22.3	4	3	Median	1.4201	1.2108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74165	0.72538	NaN	1	1	Median	0.98438	1.0317	9.3299	2	2	Median	249460000	130210000	119250000	65328000	24242000	41085000	0	0	0	85298000	58550000	26748000	98831000	47416000	51414000	5075	3146	4792	31270;31271;31272;31273	42794;42795;42796;42797;42798	42794			5	
ASSSGNDDDLTIPR	0	Acetyl (Protein N-term)	1488.6692	0.66922997	2173	Q01658	DR1	Protein Dr1	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	58.072	48.658	2	0.0068815	19779	160513_QHF_FH_JSI10Kac_1	45.973	39.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5076	2173	4793	31274;31275;31276	42799;42800;42801	42801			3	
ASSSGSKAEFIVGGK	2	Acetyl (K);Acetyl (Protein N-term)	1507.7518	0.75183739	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				4	4						3	2	3	73.792	65.081	2	8.8773E-44	25727	160513_QHF_FH_JSI12Kacf_1	105.46	89.889			0.47136	0.50291	71.284	6	0	Median	NaN	NaN	NaN	0	0	Median	1.5032	1.7725	27.158	2	0	Median	0.44398	0.42211	12.288	2	0	Median	0.46662	0.50291	3.0044	2	0	Median	156170000	97440000	58727000	0	0	0	30103000	13811000	16292000	19022000	12918000	6103900	107040000	70711000	36331000	5077	1633	4794	31277;31278;31279;31280;31281;31282;31283;31284	42802;42803;42804;42805;42806;42807;42808;42809;42810;42811;42812;42813	42807	1648		12	
ASSSILIDESEPTTNIQIR	0	Unmodified	2073.059	0.058978027	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	70.657	70.105	2;3	1.3526E-16	63406	160511_QHF_FH_JSI10i_1	152.74	122.68			1.0916	1.0753	10.661	5	3	Median	1.4368	1.1591	NaN	1	1	Median	0.88583	1.0521	NaN	1	1	Median	1.1129	1.0753	NaN	1	0	Median	0.97992	1.0256	18.768	2	1	Median	149050000	74224000	74827000	12343000	4771300	7571400	37398000	17785000	19613000	35271000	18073000	17197000	64040000	33594000	30445000	5078	5453	4795	31285;31286;31287;31288;31289;31290	42814;42815;42816;42817;42818;42819;42820;42821	42820			8	
ASSSLGLQDFDLLR	0	Unmodified	1520.7835	0.78347187	1523	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	91.287	90.821	2	3.4365E-05	79802	160511_QHF_FH_JSI11i_2	160.67	91.828			1.1793	1.3554	8.9339	4	4	Median	NaN	NaN	NaN	0	0	Median	1.1325	1.3537	13.712	2	2	Median	1.3755	1.4259	NaN	1	1	Median	1.1531	1.2884	NaN	1	1	Median	125650000	59605000	66043000	0	0	0	56609000	25319000	31290000	39970000	18359000	21611000	29069000	15927000	13141000	5079	1523	4796	31291;31292;31293;31294	42822;42823;42824;42825	42824			4	
ASSSLPK	1	Unmodified	688.37555	0.37555455	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	no	no	0	0	0	0		By MS/MS			1	0	1										1			7.8769	7.6409	2	0.023579	5449	160511_QHF_FH_JSI10i_1	58.604	10.861			1.0605	1.2376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0605	1.2376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1022900000	531730000	491210000	0	0	0	1022900000	531730000	491210000	0	0	0	0	0	0	5080	5454	4797	31295	42826	42826			1	
ASSSSASSAGALESSLDRK	1	Unmodified	1809.8704	0.87044898	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	33.824	33.302	3	1.8292E-05	29186	160511_QHF_FH_JSI10i_2	73.11	63.352			0.92187	1.1016	23.346	4	1	Linear	1.0341	0.8981	NaN	1	0	Median	0.82181	0.98061	NaN	1	0	Median	1.1877	1.0851	NaN	1	0	Median	0.62876	0.63399	NaN	1	1	Median	248980000	127950000	121030000	56564000	29855000	26708000	64352000	35961000	28391000	92402000	38992000	53410000	35660000	23143000	12517000	5081	2984	4798	31296;31297;31298;31299	42827;42828;42829;42830;42831	42830			5	
ASSSTVPLGFHYETK	1	Acetyl (Protein N-term)	1664.8046	0.80460124	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	62.168	61.582	2	5.8778E-05	56098	160511_QHF_FH_JSI12i_1	53.448	37.908			0.4606	0.50709	62.155	2	1	Median	NaN	NaN	NaN	0	0	Median	0.27885	0.32675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76079	0.78697	NaN	1	0	Median	229380000	78429000	150950000	45350000	0	45350000	81910000	44620000	37290000	29256000	0	29256000	72865000	33809000	39056000	5082	4519	4799	31300;31301;31302;31303;31304	42832;42833;42834;42835;42836	42833			5	
ASSTGSFTAPDPGLK	1	Unmodified	1434.6991	0.69907354	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.654	44.01	2	2.3122E-06	40015	160511_QHF_FH_JSI12i_1	124.21	104.96			1.4216	1.4446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4216	1.4446	NaN	1	1	Median	28752000	11763000	16988000	0	0	0	0	0	0	0	0	0	28752000	11763000	16988000	5083	3435	4800	31305	42837	42837			1	
ASSTPSSETQEEFVDDFR	0	Unmodified	2030.8705	0.87050855	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.562	58.92	2	8.2422E-31	53171	160511_QHF_FH_JSI10i_1	185.87	173.1			0.89966	0.87926	4.6461	3	0	Plateau	1.1044	0.8931	NaN	1	0	Median	0.84631	0.95698	NaN	1	0	Median	0.89966	0.87604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134070000	70631000	63438000	49282000	20828000	28454000	32152000	19072000	13079000	52635000	30731000	21904000	0	0	0	5084	1360	4801	31306;31307;31308	42838;42839;42840;42841;42842;42843;42844	42841			7	
ASSTSLTSTQPTK	1	Unmodified	1307.6569	0.65687437	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	15.382	14.924	2	2.5816E-12	12224	160511_QHF_FH_JSI9i_1	120.86	85.417			2.2792	2.181	94.152	4	3	Median	1.3675	1.1123	NaN	1	1	Median	3.7988	4.5099	NaN	1	1	Median	4.3933	4.2763	NaN	1	1	Median	0.67193	0.70842	NaN	1	0	Median	501570000	141690000	359870000	51936000	25567000	26369000	218250000	47142000	171110000	169480000	28316000	141170000	61893000	40669000	21224000	5085	1443	4802	31309;31310;31311;31312;31313	42845;42846;42847;42848;42849;42850	42850			6	
ASSTSPVEISEWLDQK	1	Unmodified	1775.8578	0.85775902	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								4	2	3	3	82.011	81.408	2;3	1.7705E-97	73778	160511_QHF_FH_JSI10i_1	300.75	262.35			1.1383	0.96422	15.277	11	4	Median	1.139	0.96126	2.7761	3	1	Median	0.72758	0.86909	2.7258	2	1	Median	1.1205	1.08	9.62	3	1	Plateau	0.89665	0.94576	21.984	3	1	Plateau	1323800000	645880000	677910000	315440000	150730000	164710000	324930000	178440000	146490000	411440000	180860000	230580000	271980000	135840000	136140000	5086	1041	4803	31314;31315;31316;31317;31318;31319;31320;31321;31322;31323;31324;31325	42851;42852;42853;42854;42855;42856;42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867;42868;42869;42870;42871	42863			20	
ASSTSTPEPTR	0	Unmodified	1132.536	0.53603095	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	3	1	8.6183	6.2894	2	6.8364E-10	5689	160511_QHF_FH_JSI10i_1	138.08	120.84			0.85879	0.92185	26.25	7	0	Median	1.2078	0.99207	NaN	1	0	Median	0.78948	0.9267	2.8413	2	0	Median	0.85879	0.82935	39.986	3	0	Median	0.88221	0.92185	NaN	1	0	Median	612200000	297280000	314930000	170150000	75336000	94815000	146050000	73763000	72287000	186070000	90138000	95931000	109930000	58039000	51896000	5087	3570	4804	31326;31327;31328;31329;31330;31331;31332	42872;42873;42874;42875;42876;42877;42878	42875			7	
ASSVFWQQMEFVDSLHGQPK	1	Unmodified	2320.0947	0.094652027	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	2	1	87.518	83.407	3	1.1957E-08	78396	160511_QHF_FH_JSI12i_3	104.03	100.53			0.93182	0.88977	22.349	6	1	Median	1.2423	1.0864	NaN	1	0	Median	0.72213	0.84756	44.949	2	1	Median	0.93182	0.88977	3.0604	2	0	Median	0.83991	0.8455	NaN	1	0	Median	327880000	157940000	169950000	28187000	9563100	18624000	82230000	41667000	40563000	136380000	64547000	71832000	81085000	42160000	38926000	5088	4039	4805	31333;31334;31335;31336;31337;31338	42879;42880;42881;42882;42883;42884;42885;42886;42887;42888;42889;42890;42891;42892	42890			13	
ASSVGNVADSTEPTK	1	Acetyl (Protein N-term)	1503.7053	0.70528113	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	3									2	1			39.457	38.66	2	3.3874E-12	34124	160511_QHF_FH_JSI9i_1	110.08	94.187			0.53981	0.51502	196.78	2	2	Median	0.15846	0.1281	NaN	1	1	Median	1.8389	2.0707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54621000	31219000	23402000	20569000	18995000	1574100	34052000	12224000	21828000	0	0	0	0	0	0	5089	274	4806	31339;31340;31341	42893;42894;42895	42895			3	
ASSVIFGLK	1	Unmodified	920.53312	0.53311783	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.15		4	2					2	1	1	3	4	1	58.957	54.888	2	2.5603E-05	48282	160511_QHF_FH_JSI11i_3	104.44	76.014			0.77742	0.80025	17.304	9	2	Median	1.1397	0.95813	NaN	1	0	Median	0.64616	0.79047	14.806	3	1	Plateau	0.82566	0.8008	24.441	4	1	Median	0.73092	0.80025	NaN	1	0	Median	337050000	179100000	157950000	49928000	23628000	26300000	82899000	46728000	36171000	148370000	78987000	69384000	55853000	29761000	26092000	5090	4627	4807	31342;31343;31344;31345;31346;31347;31348;31349;31350	42896;42897;42898;42899;42900;42901;42902;42903	42896			7	
ASSVTTFTGEPNTCPR	0	Unmodified	1723.7835	0.78354822	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	37.719	37.106	2	6.8073E-56	33189	160511_QHF_FH_JSI10i_1	186.58	163.9			1.1018	1.0152	14.556	4	2	Median	1.1879	1.0215	NaN	1	0	Median	0.83263	0.99699	NaN	1	1	Median	1.022	1.0089	NaN	1	1	Median	1.293	1.3492	NaN	1	0	Median	257750000	135380000	122370000	37269000	15093000	22176000	67496000	35493000	32003000	93870000	51104000	42766000	59115000	33694000	25420000	5091	1789	4808	31351;31352;31353;31354;31355	42904;42905;42906;42907	42907			4	
ASSVVVSGTPIR	0	Unmodified	1171.6561	0.65608651	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		45.519	35.226	2	0.00081431	20981	160513_QHF_FH_JSI11Kac_4	96.015	81.808			0.83468	0.82782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83468	0.82782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5289800	3101800	2188000	0	0	0	0	0	0	5289800	3101800	2188000	0	0	0	5092	1104	4809	31356;31357	42908;42909;42910	42909			3	
ASTALSNEQQAR	0	Unmodified	1274.6215	0.62149192	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	3	3	2	12.264	8.7661	2	3.0517E-53	7717	160511_QHF_FH_JSI11i_1	263.6	250.23			0.97789	1.0111	6.8103	9	0	Median	1.2568	1.0044	NaN	1	0	Median	0.74211	0.87696	9.2857	3	0	Plateau	1.0419	1.0111	6.5337	3	0	Median	0.96628	1.0481	3.5688	2	0	Median	1150600000	591390000	559250000	246200000	115250000	130950000	326080000	179640000	146430000	298140000	157050000	141080000	280230000	139450000	140780000	5093	1016	4810	31358;31359;31360;31361;31362;31363;31364;31365;31366	42911;42912;42913;42914;42915;42916;42917;42918;42919;42920;42921;42922;42923;42924	42911			14	
ASTEGVAIQGQQGTR	0	Unmodified	1501.7485	0.74848335	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	24.071	19.224	2	7.9695E-35	16306	160511_QHF_FH_JSI11i_1	163.71	137.04			1.0013	1.0206	7.7107	5	0	Median	1.3098	1.07	NaN	1	0	Median	0.7759	0.90654	NaN	1	0	Median	1.0051	0.9651	NaN	1	0	Median	0.99846	1.0574	5.0073	2	0	Median	190040000	95863000	94179000	84055000	39207000	44848000	2062400	1046900	1015500	3445700	1499000	1946700	100480000	54109000	46370000	5094	3862	4811	31367;31368;31369;31370;31371;31372	42925;42926;42927;42928;42929;42930;42931;42932;42933;42934	42925			10	
ASTEVGEMAK	1	Unmodified	1021.475	0.4750106	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			15.399	15.155	2	0.0015938	12677	160511_QHF_FH_JSI10i_1	76.572	57.058			1.0536	1.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0536	1.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143070000	55195000	87872000	0	0	0	143070000	55195000	87872000	0	0	0	0	0	0	5095	1287	4812	31373	42935	42935			1	
ASTLLRDEELEEIKK	2	Unmodified	1772.952	0.95199376	4299	Q99653	CHP1	Calcineurin B homologous protein 1	yes	yes	0	0	0	2	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		46.914	46.387	4	0.0028119	40752	160511_QHF_FH_JSI11i_3	48.823	37.778			0.79705	0.72133	15.034	2	0	Median	0.74203	0.64859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85616	0.80224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123620000	67251000	56369000	27330000	12069000	15261000	0	0	0	96289000	55181000	41108000	0	0	0	5096	4299	4813	31374;31375	42936;42937	42936			2	
ASTNAMLISAGLPPLK	1	Unmodified	1582.8753	0.87526376	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.35	3.22	8	7	1					1		5	3	5	4	83.218	82.577	2;3	2.7658E-10	74874	160511_QHF_FH_JSI10i_1	147.66	134.46			1.005	1.0383	16.162	16	1	Median	1.3464	1.0966	24.939	5	1	Median	0.77675	0.9271	8.3295	3	0	Median	1.096	1.0669	12.45	4	0	Median	0.99718	1.047	13.201	4	0	Median	632860000	317790000	315070000	170970000	74262000	96709000	140120000	78921000	61199000	192950000	95488000	97464000	128820000	69120000	59698000	5097	300	4814	31376;31377;31378;31379;31380;31381;31382;31383;31384;31385;31386;31387;31388;31389;31390;31391;31392	42938;42939;42940;42941;42942;42943;42944;42945;42946;42947;42948;42949;42950;42951;42952;42953;42954;42955;42956;42957;42958;42959;42960;42961	42948			23	
ASTNAMLISAGLPPLK	1	Oxidation (M)	1598.8702	0.87017839	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		78.588	67.978	3	0.028155	36127	160513_QHF_FH_JSI11Kac_5	36.193	30.413			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5098	300	4814	31393	42962	42962			1	
ASTNIQDTEGNTPLHLACDEERVEEAK	1	Unmodified	3026.3887	0.38872138	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.33	0.471		2	1								1	2		54.828	54.354	4	9.8926E-08	47050	160511_QHF_FH_JSI11i_2	64.035	57.16			1.0316	1.139	18.793	3	2	Median	NaN	NaN	NaN	0	0	Median	0.93906	1.139	NaN	1	0	Median	1.2817	1.2352	25.74	2	2	Median	NaN	NaN	NaN	0	0	Median	169110000	88821000	80290000	0	0	0	55319000	29251000	26068000	113790000	59570000	54222000	0	0	0	5099	573	4815	31394;31395;31396	42963;42964;42965;42966;42967	42964			5	
ASTNLQDQLEK	1	Unmodified	1245.6201	0.62009493	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.257	29.978	2	3.8645E-05	26725	160511_QHF_FH_JSI11i_1	104.14	89.382			0.14843	0.15939	7.3143	2	2	Median	NaN	NaN	NaN	0	0	Median	0.13002	0.15136	NaN	1	1	Median	0.16945	0.16786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	290110000	236920000	53193000	0	0	0	155050000	128450000	26599000	135060000	108470000	26595000	0	0	0	5100	5004	4816	31397;31398	42968;42969	42968			2	
ASTPDWVSEGPQPGLRR	0	Unmodified	1851.9228	0.92275932	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				49.614	48.009	3	0.044846	39295	160511_QHF_FH_JSI9i_3	27.496	16.862			0.98481	0.79383	14.289	2	2	Median	0.98481	0.79383	14.289	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48379000	26262000	22118000	48379000	26262000	22118000	0	0	0	0	0	0	0	0	0	5101	3411	4817	31399;31400	42970;42971	42970			2	
ASTPYIEK	1	Unmodified	907.4651	0.46509784	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	13.83	13.466	2	0.024604	5126	160511_QHF_FH_JSI10i_1	42.869	23.233			0.42536	0.47594	142.05	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1163	1.2995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.16209	0.17432	NaN	1	1	Median	434520000	354820000	79703000	0	0	0	50207000	23622000	26585000	0	0	0	384320000	331200000	53118000	5102	3955	4818	31401;31402	42972;42973	42973			2	
ASTSKSESSQK	2	Acetyl (K)	1180.5572	0.55716033	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	5.6173	-1.5908	2	0.010381	1661	160513_QHF_FH_JSI12Kac_2	58.37	43.219			0.43181	0.4369	4.4051	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47712	0.45072	NaN	1	0	Median	0.3908	0.4235	NaN	1	0	Median	3027800	2117000	910720	0	0	0	0	0	0	1436700	888210	548520	1591000	1228800	362200	5103	2018	4819	31403;31404	42974	42974	2051		1	
ASTSLKPPTADLFTGVLPNGYNPPR	1	Unmodified	2612.3599	0.3598515	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			89.182	88.052	3	3.4442E-05	73607	160511_QHF_FH_JSI10i_3	54.728	43.096			0.68224	0.6854	30.912	2	1	Median	0.6427	0.55083	NaN	1	1	Median	0.7242	0.85285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26402000	15741000	10661000	9267300	5171600	4095700	17134000	10569000	6565200	0	0	0	0	0	0	5104	163	4820	31405;31406	42975;42976	42975			2	
ASTSSSSSSSSNQQTEK	1	Unmodified	1701.7289	0.7289297	1761	P51965	UBE2E1	Ubiquitin-conjugating enzyme E2 E1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				4.6964	4.1204	2	1.5043E-73	2082	160511_QHF_FH_JSI9i_1	204.13	176.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14032000	14032000	0	14032000	14032000	0	0	0	0	0	0	0	0	0	0	5105	1761	4821	31407;31408	42977;42978	42978			2	
ASTVVAVGLTIAAAGFAGR	0	Acetyl (Protein N-term)	1772.9785	0.97848328	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	104.5	104.41	2	4.6156E-16	92860	160511_QHF_FH_JSI10i_2	148.96	116.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5106	4023	4822	31409;31410;31411;31412;31413	42979;42980;42981;42982;42983	42983			5	
ASVAAQQQEEAR	0	Unmodified	1286.6215	0.62149192	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	11.578	4.3926	2	0.0031311	4941	160513_QHF_FH_JSI11Kac_3	64.297	53.146			0.88175	0.89164	19.38	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79945	0.77746	NaN	1	0	Median	0.97254	1.0226	NaN	1	0	Median	4332400	2690900	1641600	0	0	0	0	0	0	2876100	1761900	1114200	1456300	928930	527370	5107	3325	4823	31414;31415	42984;42985;42986	42985			3	
ASVAFHTQLFFK	1	Unmodified	1394.7347	0.73467118	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	1	2	2	5	70.458	66.333	3	1.3675E-24	34885	160513_QHF_FH_JSI9Kac_6	161.94	137.65			0.85276	0.92082	35.405	9	5	Median	0.78492	0.67629	NaN	1	0	Median	0.46675	0.54252	12.193	2	1	Median	1.2582	1.2074	24.638	2	1	Median	0.95579	1.0041	23.849	4	3	Median	669960000	383750000	286210000	117160000	60432000	56730000	200460000	139530000	60930000	134930000	69934000	64999000	217410000	113860000	103550000	5108	5523	4824	31416;31417;31418;31419;31420;31421;31422;31423;31424;31425	42987;42988;42989;42990;42991;42992;42993;42994	42989			8	
ASVANGGEK	1	Unmodified	831.40865	0.4086456	4768	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	4.7771	4.4354	2	0.0012236	2378	160511_QHF_FH_JSI12i_1	73.157	44.055			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5109	4768	4825	31426	42995	42995			1	
ASVAVDPQPSVVTR	0	Acetyl (Protein N-term)	1466.7729	0.77290718	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			57.71	56.945	2	0.00014792	50527	160511_QHF_FH_JSI9i_1	92.866	71.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5110	4281	4826	31427;31428	42996;42997	42997			2	
ASVEDADTQSK	1	Unmodified	1149.515	0.51496116	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	9.9017	6.5812	2	9.5965E-19	6401	160511_QHF_FH_JSI10i_1	167.67	139.5			0.88932	0.98707	7.2718	7	0	Median	1.2471	1.0295	NaN	1	0	Median	0.85965	1.0148	3.921	2	0	Median	1.0145	0.99839	14.87	2	0	Median	0.88829	0.94261	1.9403	2	0	Median	1771200000	895660000	875510000	478000000	213140000	264860000	470240000	285980000	184250000	431420000	201050000	230370000	391520000	195490000	196030000	5111	2441	4827	31429;31430;31431;31432;31433;31434;31435	42998;42999;43000;43001;43002;43003;43004;43005;43006;43007;43008;43009	43004			12	
ASVGECPAPVPVK	1	Acetyl (Protein N-term)	1351.6806	0.6805867	1869	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		61.46	51.953	2	0.0065565	20353	160513_QHF_FH_JSI11Kac_1	45.368	34.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5112	1869	4828	31436	43010	43010			1	
ASVGFGGSCFQK	1	Unmodified	1243.5656	0.56555694	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1			3	3	3	41.401	40.622	2	2.2253E-07	34696	160511_QHF_FH_JSI12i_3	131.82	118.05			1.4874	1.5082	51.786	7	5	Median	NaN	NaN	NaN	0	0	Median	2.8698	3.412	51.515	2	2	Median	1.2117	1.1394	11.581	2	2	Median	1.4874	1.5082	19.962	3	1	Median	623340000	269410000	353930000	0	0	0	86819000	29761000	57058000	243460000	105390000	138070000	293060000	134260000	158800000	5113	440	4829	31437;31438;31439;31440;31441;31442;31443;31444;31445	43011;43012;43013;43014;43015;43016;43017;43018;43019;43020	43020			10	
ASVGMYLISK	1	Unmodified	1067.5685	0.56851706	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	2	3	2	2	63.246	57.658	2	1.2189E-08	31737	160513_QHF_FH_JSI10Kac_6	142.43	108.88			0.94836	0.95168	9.6787	9	0	Median	1.2136	1.0094	0.1958	2	0	Median	0.93028	1.0966	9.5189	3	0	Median	0.95491	0.89016	2.0576	2	0	Median	0.86647	0.89171	2.8329	2	0	Median	2053700000	1051600000	1002100000	378270000	186130000	192150000	419680000	241580000	178100000	581730000	265440000	316280000	673980000	358400000	315580000	5114	900	4830	31446;31447;31448;31449;31450;31451;31452;31453;31454	43021;43022;43023;43024;43025;43026;43027;43028;43029;43030;43031;43032;43033;43034;43035;43036	43036			16	
ASVGMYLISK	1	Oxidation (M)	1083.5634	0.56343168	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	1	0	By MS/MS	By MS/MS			15	0								2		1	1			57.407	46.789	2	0.023312	24841	160513_QHF_FH_JSI9Kac_5	60.398	51.535			1.0266	1.0309	53.403	2	2	Median	0.83094	0.70668	NaN	1	1	Median	1.2682	1.5039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11217000	5677800	5538800	6533800	3467600	3066100	4682900	2210200	2472700	0	0	0	0	0	0	5115	900	4830	31455;31456	43037;43038	43037			2	
ASVHTLSGHTNAVATVR	0	Unmodified	1719.9016	0.90162994	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.88	6.29			5						3	4	4			26.917	22.615	2;3;4	3.407E-08	18211	160511_QHF_FH_JSI9i_3	129.36	104.04			0.77814	0.88101	12.231	7	1	Median	1.2139	0.98001	5.8762	3	0	Median	0.7418	0.86617	8.4218	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251360000	125080000	126280000	163480000	73130000	90351000	87881000	51948000	35933000	0	0	0	0	0	0	5116	350	4831	31457;31458;31459;31460;31461;31462;31463;31464	43039;43040;43041;43042;43043;43044;43045;43046;43047;43048	43044			10	
ASVILAGLGFTPK	1	Unmodified	1272.7442	0.74417324	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	83.64	78.52	2	1.6838E-116	68500	160511_QHF_FH_JSI9i_3	272.03	257.73			1.0668	1.0348	23.485	9	1	Median	1.2516	0.96208	8.5265	3	0	Plateau	0.89033	1.0322	14.325	2	1	Median	0.97093	0.92359	2.7399	2	0	Median	1.4111	1.468	37.422	2	0	Median	1322500000	657100000	665410000	311030000	154990000	156040000	284100000	158430000	125670000	380270000	172890000	207380000	347120000	170790000	176330000	5117	5014	4832	31465;31466;31467;31468;31469;31470;31471;31472;31473	43049;43050;43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061	43056			13	
ASVITQVFHVPLEER	0	Unmodified	1723.9257	0.92571943	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3	4	3	4	2	81.65	78.928	2;3	3.9855E-31	66711	160511_QHF_FH_JSI9i_3	170.45	138.63			0.92393	0.92536	14.426	13	2	Median	1.215	1.0069	12.936	4	0	Median	0.70559	0.82809	8.6143	3	0	Median	0.95088	0.90979	15.713	4	2	Median	0.87702	0.89792	7.7462	2	0	Median	1252800000	632650000	620180000	497760000	214340000	283430000	291010000	173230000	117780000	378020000	200250000	177780000	86028000	44837000	41191000	5118	2147	4833	31474;31475;31476;31477;31478;31479;31480;31481;31482;31483;31484;31485;31486	43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073;43074;43075;43076;43077;43078;43079;43080;43081	43069			20	
ASVITQVFHVPLEERK	1	Unmodified	1852.0207	0.020682448	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			72.211	70.744	4	0.0001446	59224	160511_QHF_FH_JSI10i_3	64.52	44.132			1.0046	0.98073	6.5844	2	1	Median	1.1471	0.93611	NaN	1	1	Median	0.87976	1.0275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45464000	23545000	21919000	20274000	11372000	8901700	25190000	12173000	13017000	0	0	0	0	0	0	5119	2147	4834	31487;31488	43082;43083;43084;43085	43083			4	
ASVLDTSMSAGSGSPSK	1	Unmodified	1580.7352	0.73520105	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.714	38.094	2	1.2014E-97	34220	160511_QHF_FH_JSI10i_1	255.16	230.3			0.83955	0.83398	28.675	4	0	Median	0.75669	0.61809	NaN	1	0	Median	0.60248	0.72886	NaN	1	0	Median	1.1986	1.1813	NaN	1	0	Median	0.93148	0.95426	NaN	1	0	Median	316120000	177390000	138730000	73748000	41128000	32620000	81185000	54016000	27169000	92090000	43243000	48847000	69094000	39003000	30092000	5120	5463	4835	31489;31490;31491;31492	43086;43087;43088;43089;43090;43091;43092	43091			7	
ASVLFANEK	1	Unmodified	977.5182	0.51819605	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	35.406	34.498	2	0.044242	29152	160511_QHF_FH_JSI11i_2	37.075	25.564			0.84922	1.2953	18.427	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82762	1.049	NaN	1	0	Median	1.3207	1.3181	NaN	1	0	Median	0.84922	0.91535	NaN	1	0	Median	125180000	62049000	63134000	0	0	0	41031000	25367000	15664000	52564000	23183000	29381000	31588000	13498000	18090000	5121	1347	4836	31493;31494;31495	43093;43094	43093			1	
ASVLLGSR	0	Unmodified	801.47085	0.47085192	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	25.496	24.611	2	0.0018537	20356	160511_QHF_FH_JSI10i_3	84.498	39.806			1.1514	0.91802	21.18	3	0	Median	1.1514	0.91802	NaN	1	0	Median	0.79832	0.90738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3111	1.317	NaN	1	0	Median	416130000	192570000	223550000	162170000	59661000	102510000	160020000	90174000	69842000	0	0	0	93941000	42739000	51202000	5122	3503	4837	31496;31497;31498	43095;43096;43097;43098;43099	43096			5	
ASVLSYESLVHAVAGAVGSVTAMTVFFPLDTAR	0	Acetyl (Protein N-term)	3407.7435	0.74352789	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	105.54	96.18	3	4.1375E-80	55608	160513_QHF_FH_JSI9Kac_6	239.87	217.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5123	378	4838	31499;31500;31501	43100;43101;43102	43101			3	
ASVMLFMK	1	Unmodified	925.47653	0.47653093	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.68		4	2					2	4	3	4	3	2	69.28	64.042	2	5.2145E-11	34610	160513_QHF_FH_JSI11Kac_6	157.52	117.41			1.0441	1.0835	18.597	12	1	Median	1.2641	1.0345	10.755	3	0	Plateau	0.93698	1.1117	5.8054	4	1	Median	1.1626	1.0931	38.259	3	0	Median	0.9898	1.0808	11.015	2	0	Median	3771900000	2027900000	1744000000	1015300000	497250000	518000000	1242100000	746530000	495590000	1127500000	574580000	552890000	387100000	209580000	177510000	5124	595	4839	31502;31503;31504;31505;31506;31507;31508;31509;31510;31511;31512;31513	43103;43104;43105;43106;43107;43108;43109;43110;43111;43112;43113;43114;43115;43116;43117;43118;43119;43120;43121;43122;43123;43124	43105			22	
ASVMLFMK	1	2 Oxidation (M)	957.46636	0.46636017	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.748							2	4	4	2	3	2	3	50.288	40.282	2	0.00026468	21714	160513_QHF_FH_JSI9Kac_5	104.21	69.401			1.3254	1.3548	29.166	10	4	Median	1.3129	1.1097	22.573	2	0	Median	1.3451	1.5978	35.774	3	1	Median	1.4214	1.4045	11.096	2	1	Median	1.0943	1.1778	22.095	3	2	Median	215600000	89346000	126250000	65182000	26270000	38912000	52680000	20676000	32003000	39922000	17377000	22545000	57815000	25023000	32792000	5125	595	4839	31514;31515;31516;31517;31518;31519;31520;31521;31522;31523	43125;43126;43127;43128;43129;43130;43131;43132	43125		223;224	8	
ASVMLFMK	1	Oxidation (M)	941.47145	0.47144555	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.18			2				1	5	8	5	5	2	4	59.357	50.724	2	0.0024098	40828	160511_QHF_FH_JSI9i_3	87.323	75.418			1.1054	1.0714	12.969	15	1	Median	1.2148	1.02	13.581	5	0	Median	0.89833	1.0671	8.2157	4	0	Median	1.0689	1.0199	6.9608	2	0	Median	0.9358	0.99251	20.059	4	1	Linear	962120000	520220000	441900000	279010000	137310000	141700000	250610000	141990000	108620000	230070000	127480000	102590000	202430000	113440000	88986000	5126	595	4839	31524;31525;31526;31527;31528;31529;31530;31531;31532;31533;31534;31535;31536;31537;31538;31539	43133;43134;43135;43136;43137;43138;43139;43140;43141;43142;43143;43144;43145;43146;43147;43148;43149;43150;43151;43152;43153;43154	43139		223;224	22	
ASVPTIQDQASAMQLSQCAK	1	Unmodified	2133.0194	0.019438173	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.339	60.901	2	9.9958E-17	55281	160511_QHF_FH_JSI11i_1	174.59	158.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7851600	7851600	0	0	0	0	0	0	0	7851600	7851600	0	0	0	0	5127	5616	4840	31540	43155;43156	43155			2	
ASVSALTEELDSITSELHAVEIQIQELTER	0	Acetyl (Protein N-term)	3352.6886	0.68857502	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	1	0	0		By MS/MS			16	0									1		1			105.31	99.59	3	5.7095E-157	58974	160513_QHF_FH_JSI10Kac_6	314.58	270.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5128	1579	4841	31541	43157	43157			1	
ASVSELACIYSALILHDDEVTVTEDK	1	Acetyl (Protein N-term)	2919.4059	0.40593457	835	P05386	RPLP1	60S acidic ribosomal protein P1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.745	1	2	3							1	2	2	1	103	102.93	3	2.778E-42	92096	160511_QHF_FH_JSI11i_3	104.87	98.713			1.0722	1.1427	26.009	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1272	1.3258	21.207	2	0	Median	0.98193	0.96574	23.997	2	0	Median	NaN	NaN	NaN	0	0	Median	440640000	204970000	235670000	29258000	0	29258000	91985000	44577000	47409000	306540000	160390000	146150000	12858000	0	12858000	5129	835	4842	31542;31543;31544;31545;31546;31547	43158;43159;43160;43161;43162	43158			5	
ASVSQVEADLK	1	Unmodified	1145.5928	0.59281755	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	6					3	3			1	4	3	4	48.571	43.642	2	7.0003E-13	38563	160511_QHF_FH_JSI9i_1	143.5	107.99			0.77361	0.84484	32.696	11	6	Median	1.1429	0.92471	NaN	1	0	Median	0.61815	0.73173	29.089	4	2	Median	1.1956	1.1684	18.928	2	1	Median	0.7147	0.77623	45.491	4	3	Median	4370400000	2294500000	2075900000	400620000	216810000	183810000	1732800000	941080000	791760000	758850000	342000000	416850000	1478100000	794640000	683450000	5130	2252	4843	31548;31549;31550;31551;31552;31553;31554;31555;31556;31557;31558;31559	43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177;43178	43174			16	
ASVSSATFSGHGAR	0	Acetyl (Protein N-term)	1375.648	0.64804102	3270	Q7Z4H3	HDDC2	HD domain-containing protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.9		4					1	1		2	1	2	1	34.519	30.597	2	9.8922E-07	26656	160511_QHF_FH_JSI9i_2	126.71	118.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5131	3270	4844	31560;31561;31562;31563;31564;31565	43179;43180;43181;43182;43183;43184	43182			6	
ASVSVTAEDEGTQR	0	Unmodified	1448.6743	0.67431535	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	20.997	20.478	2	2.3045E-11	17648	160511_QHF_FH_JSI10i_1	191.52	169.43			0.98832	1.0096	8.54	7	7	Median	1.255	1.0476	14.791	2	2	Median	0.87313	1.016	5.8637	2	2	Median	1.0149	0.9508	9.2694	2	2	Median	0.98832	1.0096	NaN	1	1	Median	525350000	245890000	279460000	140200000	52894000	87301000	175290000	96733000	78554000	141730000	67108000	74624000	68133000	29157000	38976000	5132	834	4845	31566;31567;31568;31569;31570;31571;31572	43185;43186;43187;43188;43189;43190;43191	43189			7	
ASVTLSEAEK	1	Acetyl (Protein N-term)	1075.5397	0.53971935	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	8.5	4.33	1			3							1	2	1	51.532	42.18	2	8.8939E-05	38314	160511_QHF_FH_JSI11i_1	89.08	69.293			1.2306	1.1931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2306	1.1931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2663700	1251900	1411800	0	0	0	0	0	0	2663700	1251900	1411800	0	0	0	5133	2607	4846	31573;31574;31575;31576	43192;43193;43194;43195	43192			4	
ASVVTLPVYLNFTR	0	Unmodified	1578.877	0.87697832	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.57	1	4	4						5	3	5	3	3	95.232	92.378	2	1.2361E-29	87631	160511_QHF_FH_JSI11i_3	183.99	169.57			0.9276	0.98132	11.734	14	3	Median	1.3326	1.1386	7.489	3	0	Plateau	0.78471	0.90225	11.232	5	3	Median	1.0655	0.97217	1.9422	3	0	Plateau	0.90607	0.89341	15.355	3	0	Median	1244600000	629310000	615280000	200720000	84095000	116620000	473390000	258950000	214440000	262530000	126190000	136350000	307960000	160080000	147880000	5134	2517	4847	31577;31578;31579;31580;31581;31582;31583;31584;31585;31586;31587;31588;31589;31590	43196;43197;43198;43199;43200;43201;43202;43203;43204;43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219	43197			24	
ASWIGYAIAYHLLEDYEMAAK	1	Unmodified	2414.1617	0.16166896	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.192	89.765	3	2.0969E-60	53743	160513_QHF_FH_JSI10Kac_6	201.38	182.6			1.0058	1.0079	16.27	4	0	Median	1.17	0.99326	NaN	1	0	Median	0.85321	1.0228	NaN	1	0	Median	1.4029	1.3222	NaN	1	0	Median	0.86459	0.90372	NaN	1	0	Median	950650000	484820000	465830000	223330000	98056000	125280000	451770000	252110000	199660000	152040000	65755000	86287000	123510000	68901000	54606000	5135	4518	4848	31591;31592;31593;31594	43220;43221;43222;43223;43224;43225	43225			6	
ASWIGYAIAYHLLEDYEMAAK	1	Oxidation (M)	2430.1566	0.15658358	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	97.981	88.539	3	2.6347E-13	48572	160513_QHF_FH_JSI12Kac_6	112.54	104.55			1.1508	1.2333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1508	1.2333	NaN	1	0	Median	43073000	18337000	24735000	0	0	0	0	0	0	0	0	0	43073000	18337000	24735000	5136	4518	4848	31595	43226	43226		2488	1	
ASWIGYAIAYHLLK	1	Unmodified	1604.8715	0.87149901	3068	Q6N069	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	90.259	82.112	2;3	4.445E-57	45838	160513_QHF_FH_JSI11Kac_6	207.66	193.63			0.82395	0.87391	22.421	7	2	Median	1.2754	1.0872	26.572	2	1	Median	0.69898	0.82791	20.077	2	0	Median	0.77045	0.73261	16.54	2	1	Median	0.82395	0.87391	NaN	1	0	Median	4396900000	2156300000	2240600000	995540000	388870000	606680000	1904900000	1073200000	831730000	1127300000	533900000	593390000	369170000	160330000	208840000	5137	3068	4849	31596;31597;31598;31599;31600;31601;31602	43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237	43228			11	
ASWSSLSMDEK	1	Unmodified	1239.5442	0.5441528	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.5	4	4	3				3	1		3	4	4	4	49.695	46.794	2	1.1516E-72	41281	160511_QHF_FH_JSI11i_3	242.83	209.99			1.0102	1.0307	11.655	14	1	Median	1.2437	0.97271	5.9896	3	1	Plateau	0.87459	1.0435	1.076	3	0	Median	1.0136	0.97665	17.909	4	0	Median	1.0102	1.0747	9.6643	4	0	Median	6384700000	3143300000	3241500000	1139500000	489370000	650120000	1334600000	728580000	606020000	2356600000	1175300000	1181300000	1554100000	750030000	804030000	5138	1026	4850	31603;31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614;31615;31616;31617	43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273;43274;43275	43238			38	
ASWSSLSMDEK	1	Oxidation (M)	1255.5391	0.53906742	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.86	1	5	2				2	2		2	3	2	5	38.542	34.363	2	1.7753E-05	29058	160511_QHF_FH_JSI12i_3	116.3	90.919			0.93347	0.98057	25.377	11	6	Median	1.0657	0.90633	17.135	2	1	Median	0.64775	0.90508	30.7	3	2	Plateau	0.85904	0.88662	10.445	2	1	Median	0.99251	1.0517	33.836	4	2	Median	261160000	138140000	123010000	28188000	13946000	14242000	74955000	45491000	29464000	41949000	21591000	20357000	116070000	57116000	58950000	5139	1026	4850	31618;31619;31620;31621;31622;31623;31624;31625;31626;31627;31628;31629	43276;43277;43278;43279;43280;43281;43282;43283;43284;43285;43286;43287;43288;43289	43288		624	14	
ASWTNASK	1	Unmodified	863.41373	0.41373097	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	11.28	10.894	2	0.010863	8196	160511_QHF_FH_JSI12i_3	54.712	32.09			1.1271	1.2638	29.249	5	0	Median	0.92662	0.7942	NaN	1	0	Median	1.1734	1.4128	NaN	1	0	Median	1.3723	1.4213	NaN	1	0	Median	0.96883	1.016	30.867	2	0	Median	345480000	184580000	160900000	49219000	25636000	23583000	63164000	36868000	26296000	76705000	40006000	36699000	156390000	82070000	74318000	5140	3921	4851	31630;31631;31632;31633;31634	43290;43291	43291			2	
ASWTSILAK	1	Unmodified	975.53893	0.53893149	5031	Q9NVG8	TBC1D13	TBC1 domain family member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.654	62.831	2	0.00040657	52773	160511_QHF_FH_JSI10i_3	81.296	45.111			0.3668	0.38117	60.509	4	2	Linear	0.76875	0.62673	NaN	1	0	Median	0.31493	0.35672	NaN	1	0	Median	1.5234	1.4244	NaN	1	1	Median	1.0385	1.0335	NaN	1	1	Median	518660000	284960000	233690000	113210000	62606000	50607000	145360000	96699000	48659000	104670000	43764000	60903000	155420000	81896000	73524000	5141	5031	4852	31635;31636;31637;31638	43292;43293;43294;43295;43296	43294			5	
ASYAEQLSMLK	1	Unmodified	1239.6169	0.61692381	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	58.678	57.94	2	1.0147E-05	52603	160511_QHF_FH_JSI11i_1	110.38	90.595			1.5814	1.596	19.794	4	1	Median	2.0374	1.7629	NaN	1	0	Median	1.6919	2.0785	NaN	1	0	Median	1.4782	1.445	NaN	1	1	Median	1.2998	1.3419	NaN	1	0	Median	243650000	96230000	147420000	58455000	21718000	36738000	34613000	15104000	19509000	85900000	33079000	52821000	64678000	26330000	38348000	5142	2587	4853	31639;31640;31641;31642	43297;43298	43297			2	
ASYAVSETIPK	1	Unmodified	1164.6027	0.60265396	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.33	5.91	1					1	1				1	2		45.424	38.651	2	9.896E-05	34591	160511_QHF_FH_JSI10i_1	98.73	87.137			1.107	1.0546	199.55	3	1	Median	NaN	NaN	NaN	0	0	Median	24.44	28.513	NaN	1	1	Median	0.92844	0.90829	21.126	2	0	Median	NaN	NaN	NaN	0	0	Median	1477800000	58363000	1419400000	0	0	0	1472300000	55679000	1416700000	5419100	2683500	2735600	0	0	0	5143	4930	4854	31643;31644;31645	43299;43300;43301	43300			3	
ASYDVSDSGQLEHVQPWSV	0	Unmodified	2102.9545	0.95451296	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	75.845	75.349	2;3	1.4329E-117	67022	160511_QHF_FH_JSI9i_1	270.21	263.73			1.0846	1.1084	4.0835	5	1	Median	1.3356	1.1084	NaN	1	0	Median	0.95132	1.124	NaN	1	0	Median	1.0846	1.0671	NaN	1	0	Median	1.0375	1.0885	7.1432	2	1	Median	979200000	488840000	490360000	151330000	68927000	82406000	216250000	111770000	104480000	224320000	100240000	124080000	387300000	207900000	179400000	5144	2176	4855	31646;31647;31648;31649;31650	43302;43303;43304;43305;43306;43307;43308;43309;43310;43311;43312;43313;43314	43314			13	
ASYGVEDPEYAVTQLAQTTMR	0	Unmodified	2329.0896	0.089626228	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	1	3	3	95.203	94.868	2;3	4.2432E-27	86151	160511_QHF_FH_JSI12i_1	244.17	234.12			1.0967	1.0678	6.0511	9	4	Median	1.2649	1.0389	2.6681	2	0	Median	0.80492	0.93448	NaN	1	0	Median	1.1062	1.0777	5.758	3	2	Median	1.0703	1.0906	3.0027	3	2	Median	695930000	348130000	347800000	165140000	77725000	87414000	115360000	66848000	48512000	222020000	108090000	113930000	193410000	95464000	97948000	5145	5357	4856	31651;31652;31653;31654;31655;31656;31657;31658;31659	43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325	43322			11	
ASYGVSK	1	Unmodified	710.3599	0.35990449	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	5.95	4	4	3			2	3	2		3	6	5	4	9.8209	6.3257	2	0.009364	6492	160511_QHF_FH_JSI12i_1	79.469	31.295			0.9909	1.0081	11.516	18	0	Median	1.1876	0.99529	6.5023	3	0	Plateau	0.86421	1.0291	11.465	6	0	Median	1.0736	1.0627	9.155	5	0	Median	0.95575	1.0223	16.791	4	0	Median	17454000000	9044800000	8409400000	4013000000	1883700000	2129300000	4830600000	2616000000	2214700000	4697800000	2540500000	2157300000	3912800000	2004600000	1908200000	5146	2161	4857	31660;31661;31662;31663;31664;31665;31666;31667;31668;31669;31670;31671;31672;31673;31674;31675;31676;31677	43326;43327;43328;43329;43330;43331;43332;43333;43334;43335;43336;43337;43338;43339;43340;43341;43342;43343;43344;43345	43331			20	
ASYGVSKGK	2	Acetyl (K)	937.4869	0.48689592	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			22.847	13.134	2	0.00079429	9293	160513_QHF_FH_JSI10Kac_4	93.649	70.22			1.1757	1.4032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1757	1.4032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20189000	10197000	9991300	0	0	0	20189000	10197000	9991300	0	0	0	0	0	0	5147	2161	4858	31678	43346	43346	2268		1	
ASYILMEK	1	Unmodified	953.4892	0.4892041	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.4	1	4						3		1	2	3	2	46.619	42.129	2	0.0026468	36110	160511_QHF_FH_JSI12i_2	78.516	59.734			0.98388	1.0113	5.5837	8	1	Median	1.3538	1.1482	NaN	1	0	Median	0.81159	0.97549	2.6434	2	0	Median	1.0468	1.0517	1.6564	3	1	Median	0.91958	0.99474	0.54889	2	0	Median	925950000	444640000	481310000	163750000	63659000	100090000	165970000	89132000	76837000	400900000	197850000	203050000	195330000	93999000	101330000	5148	1629	4859	31679;31680;31681;31682;31683;31684;31685;31686	43347;43348;43349;43350;43351;43352;43353	43349			7	
ASYISSAR	0	Unmodified	853.42938	0.42938104	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	15	0								4		1	1	1	1	16.929	7.5347	2	0.045296	6876	160513_QHF_FH_JSI11Kac_5	45.335	23.407			0.77767	0.81146	13.219	4	0	Median	0.98661	0.83451	NaN	1	0	Median	0.67744	0.78904	NaN	1	0	Median	0.89274	0.89141	NaN	1	0	Median	0.61386	0.65543	NaN	1	0	Median	22575000	11451000	11124000	7879300	3722800	4156400	2667400	1710700	956690	8611200	3990300	4620900	3417300	2026900	1390400	5149	2817	4860	31687;31688;31689;31690	43354;43355	43355			2	
ASYKPVIVVHGLFDSSYSFR	1	Unmodified	2271.1688	0.16880325	5424	Q9UMR5	PPT2	Lysosomal thioesterase PPT2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			80.309	74.713	3	0.009038	40914	160513_QHF_FH_JSI10Kac_6	58.418	45.755			0.38617	0.44349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38617	0.44349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85069000	68535000	16534000	0	0	0	85069000	68535000	16534000	0	0	0	0	0	0	5150	5424	4861	31691	43356	43356			1	
ASYNNPHR	0	Unmodified	957.44168	0.44167706	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			7							2	2	2	1	5.0023	4.7365	2;3	0.00033307	2568	160511_QHF_FH_JSI9i_3	123.69	104.96			1.0163	0.9601	18.002	7	0	Median	1.3369	1.0672	0.52585	2	0	Median	0.76503	0.87817	10.566	2	0	Median	1.0979	1.0448	11.953	2	0	Median	0.67463	0.67968	NaN	1	0	Median	1627500000	795470000	832060000	676480000	281090000	395390000	642190000	346570000	295620000	228120000	116830000	111290000	80738000	50973000	29766000	5151	1830	4862	31692;31693;31694;31695;31696;31697;31698	43357;43358;43359;43360;43361	43360			5	
ASYVAPLTAQPATYR	0	Unmodified	1607.8308	0.83075641	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	3.65	6	4					1			2	2	4	3	54.102	52.3	2;3	2.729E-06	47521	160511_QHF_FH_JSI12i_1	122.33	98.475			0.92518	0.997	46.437	10	6	Median	1.2156	1.0148	0.29379	2	1	Median	0.82286	0.98501	6.8214	2	1	Median	0.72772	0.72373	66.774	4	3	Median	0.97414	1.0337	7.319	2	1	Median	1057700000	549790000	507880000	203740000	100210000	103530000	249730000	133120000	116610000	342920000	185680000	157240000	261280000	130780000	130510000	5152	4197	4863	31699;31700;31701;31702;31703;31704;31705;31706;31707;31708;31709	43362;43363;43364;43365;43366;43367;43368;43369;43370;43371;43372;43373;43374;43375	43366			14	
ASYVASTK	1	Unmodified	825.42323	0.42323303	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.857	5	1	2							3	2	1	2	8.8788	8.456	2	0.00097275	6296	160511_QHF_FH_JSI10i_1	95.741	47.568			0.76045	0.74989	24.744	8	3	Median	0.78498	0.65513	7.8313	3	1	Median	0.68485	0.78969	14.318	2	0	Median	0.97973	0.95005	NaN	1	0	Median	0.92337	0.98705	31.857	2	2	Median	2028200000	1086200000	942010000	461470000	233750000	227730000	483890000	315200000	168700000	366360000	190130000	176230000	716470000	347120000	369350000	5153	1421;1272	4864	31710;31711;31712;31713;31714;31715;31716;31717	43376;43377;43378;43379;43380;43381	43379			6	
ASYVASTKYQK	2	Acetyl (K)	1286.6507	0.65066678	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	35.192	26.042	2	2.5414E-07	15621	160513_QHF_FH_JSI12Kac_4	115.78	99.448			0.59292	0.96455	70.863	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.83136	0.97875	NaN	1	0	Median	0.60704	0.60686	NaN	1	0	Median	1.5815	1.7391	85.433	2	1	Median	47264000	25044000	22220000	0	0	0	12477000	6439800	6037300	19482000	11689000	7793300	15304000	6915000	8389300	5154	1421;1272	4865	31718;31719;31720;31721	43382;43383;43384;43385;43386;43387	43387	1179		6	
ASYVAWGHSTVVNPWGEVLAK	1	Unmodified	2270.1484	0.14840216	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.28		3	7						5	3	4	4	4	86.528	83.46	2;3	1.3383E-167	42511	160513_QHF_FH_JSI10Kac_6	319.33	281.78			0.95648	0.98811	11.037	14	2	Median	1.188	1.0082	7.5498	3	0	Median	0.84375	0.98119	7.9816	4	0	Median	1.058	0.99306	6.8794	3	1	Median	0.91034	0.93197	17.667	4	1	Median	5138200000	2615500000	2522600000	849930000	383370000	466560000	1615600000	926380000	689220000	1629200000	772160000	857020000	1043500000	533610000	509840000	5155	4924	4866	31722;31723;31724;31725;31726;31727;31728;31729;31730;31731;31732;31733;31734;31735;31736	43388;43389;43390;43391;43392;43393;43394;43395;43396;43397;43398;43399;43400;43401;43402;43403;43404;43405;43406;43407;43408;43409;43410;43411;43412;43413;43414;43415;43416;43417;43418;43419;43420;43421;43422	43422			35	
ASYYEISVDDGPWEK	1	Unmodified	1757.7784	0.77844607	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	73.047	72.852	2	1.2086E-07	65986	160511_QHF_FH_JSI10i_1	95.273	60.519			0.44636	0.49468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44636	0.49468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19276000	14150000	5126100	0	0	0	19276000	14150000	5126100	0	0	0	0	0	0	5156	2832	4867	31737;31738;31739	43423;43424;43425	43425			3	
ATAAETSASEPEAESK	1	Acetyl (Protein N-term)	1619.7162	0.71623974	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.676	27.095	2	1.7349E-30	24061	160511_QHF_FH_JSI11i_1	100.38	77.004			0.77319	1.0034	21.594	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95257	1.1408	NaN	1	0	Median	1.075	1.0034	NaN	1	0	Median	0.73344	0.74858	NaN	1	0	Median	180370000	87052000	93320000	19569000	0	19569000	54184000	26383000	27801000	49974000	27942000	22033000	56645000	32728000	23917000	5157	2604	4868	31740;31741;31742;31743	43426;43427;43428;43429;43430;43431	43427			6	
ATAAFILANEHNVALFK	1	Unmodified	1828.9836	0.98356866	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32		9	8						8	6	8	6	5	80.841	77.772	2;3	8.4596E-179	40444	160513_QHF_FH_JSI10Kac_6	283.54	228.77			0.91397	0.93345	15.046	22	2	Median	1.1444	0.94109	16.688	6	1	Median	0.77965	0.92436	10.771	6	0	Median	0.98463	0.93429	12.524	6	1	Median	0.93297	0.97956	21.47	4	0	Median	10555000000	4703500000	5851200000	1828700000	778690000	1050000000	2409600000	1413300000	996310000	2907500000	1141500000	1766000000	3408900000	1370000000	2038900000	5158	127	4869	31744;31745;31746;31747;31748;31749;31750;31751;31752;31753;31754;31755;31756;31757;31758;31759;31760;31761;31762;31763;31764;31765;31766;31767;31768	43432;43433;43434;43435;43436;43437;43438;43439;43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451;43452;43453;43454;43455;43456;43457;43458;43459;43460;43461;43462;43463;43464;43465;43466;43467;43468;43469;43470;43471;43472;43473;43474;43475;43476;43477;43478;43479;43480;43481;43482;43483;43484;43485;43486	43486			54	
ATAAFSNVGTAISK	1	Unmodified	1336.6987	0.69867961	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.68	4	3	4					1		4	2	3	3	46.977	46.149	2	1.5924E-21	39661	160511_QHF_FH_JSI11i_2	177.1	161.22			0.76966	0.75856	28.716	11	2	Median	0.88307	0.72823	28.966	3	2	Plateau	0.61251	0.70797	32.848	2	0	Median	0.77726	0.77903	19.646	3	0	Plateau	0.79903	0.82189	19.828	3	0	Plateau	1043000000	559110000	483910000	184850000	97936000	86912000	206060000	128750000	77311000	316880000	163710000	153170000	335230000	168720000	166510000	5159	2779	4870	31769;31770;31771;31772;31773;31774;31775;31776;31777;31778;31779;31780	43487;43488;43489;43490;43491;43492;43493;43494;43495;43496;43497;43498;43499;43500;43501;43502;43503;43504;43505;43506;43507;43508	43504			22	
ATAAGVK	1	Unmodified	616.35443	0.35442518	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.63	4	3	1			1				3	2	2	2	4.7138	3.6111	2	0.0099713	2263	160511_QHF_FH_JSI10i_1	76.847	37.628			0.95984	0.98839	16.946	9	1	Median	1.2783	1.0527	5.8075	3	1	Median	1.0295	1.2345	18.038	2	0	Median	0.94373	0.95468	1.4199	2	0	Median	0.79286	0.84921	19.797	2	0	Median	5577800000	2668100000	2909700000	991610000	464500000	527120000	1606500000	742890000	863630000	1497400000	685950000	811440000	1482200000	774770000	707470000	5160	1922	4871	31781;31782;31783;31784;31785;31786;31787;31788;31789	43509;43510;43511;43512;43513;43514;43515;43516;43517;43518;43519	43513			11	
ATAAPAGAPPQPQDLEFTK	1	Unmodified	1908.9581	0.95814177	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.24	9				2					3	2	2	4	60.394	57.983	2;3	1.4557E-25	52552	160511_QHF_FH_JSI11i_1	183	177.72			1.0147	1.0464	8.0774	10	1	Median	1.1656	0.96501	1.5009	2	0	Median	0.88563	1.0412	6.0415	2	0	Median	1.0588	1.0358	11.113	2	0	Median	1.0129	1.1006	7.7022	4	1	Median	1606100000	789690000	816370000	403580000	179130000	224450000	402520000	219190000	183330000	392320000	181580000	210740000	407640000	209780000	197860000	5161	1216	4872	31790;31791;31792;31793;31794;31795;31796;31797;31798;31799;31800	43520;43521;43522;43523;43524;43525;43526;43527;43528;43529;43530;43531;43532;43533;43534;43535;43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548;43549	43524			30	
ATAATEEPFPFHGLLPK	1	Acetyl (Protein N-term)	1866.9516	0.95159983	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	3	1	96.643	96.398	2	4.4256E-11	85338	160511_QHF_FH_JSI10i_2	78.903	71.532			0.78906	0.8404	77.053	8	2	Median	0.98037	0.8404	3.5413	2	0	Median	0.68465	0.83389	9.6451	2	0	Median	0.7691	0.80076	143.74	3	2	Median	0.80953	0.86509	NaN	1	0	Median	335420000	186790000	148630000	61606000	28391000	33215000	96854000	55225000	41629000	135730000	79880000	55848000	41231000	23296000	17935000	5162	1316	4873	31801;31802;31803;31804;31805;31806;31807;31808	43550;43551;43552;43553;43554;43555;43556;43557;43558;43559;43560	43560			11	
ATAAVIFLHGLGDTGHGWAEAFAGIR	0	Unmodified	2637.3452	0.34520448	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	4	2	1	2	93.901	85.588	3;4	1.8078E-223	44803	160513_QHF_FH_JSI12Kac_6	310.16	294.26			1.0652	1.0968	17.761	8	0	Median	1.2088	1.0354	15.519	3	0	Plateau	0.86127	1.0199	11.061	2	0	Median	1.4498	1.3574	NaN	1	0	Median	1.1465	1.2119	7.7456	2	0	Median	3893100000	1946600000	1946500000	744190000	349580000	394610000	2543500000	1335100000	1208500000	197030000	73774000	123260000	408350000	188170000	220180000	5163	548	4874	31809;31810;31811;31812;31813;31814;31815;31816;31817	43561;43562;43563;43564;43565;43566;43567;43568;43569;43570;43571;43572	43567			12	
ATAAYEQLK	1	Acetyl (Protein N-term)	1035.5237	0.52367535	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	4.33	4.71	4			2						1		3	2	58.742	55.837	2	5.7362E-07	41206	160511_QHF_FH_JSI9i_1	73.26	50.241			0.93256	0.94135	13.525	3	0	Plateau	1.456	1.196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93256	0.9151	NaN	1	0	Median	1.0388	1.0817	NaN	1	0	Median	352020000	162770000	189250000	92937000	30104000	62834000	0	0	0	138620000	66145000	72472000	120470000	66524000	53942000	5164	4991	4875	31818;31819;31820;31821;31822;31823	43573;43574;43575;43576;43577	43575			5	
ATAAYEQLK	1	Unmodified	993.51311	0.51311067	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				34.212	32.957	2	0.0049784	28984	160511_QHF_FH_JSI9i_1	65.252	17.404			1.6542	1.3661	NaN	1	1	Median	1.6542	1.3661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120690000	47907000	72782000	120690000	47907000	72782000	0	0	0	0	0	0	0	0	0	5165	4991	4875	31824	43578	43578			1	
ATADDELSFK	1	Unmodified	1095.5084	0.50841922	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	37.022	36.41	2	0.00012835	32550	160511_QHF_FH_JSI10i_1	98.048	75.917			1.51	1.4317	12.131	4	3	Median	1.7483	1.4246	NaN	1	0	Median	1.5574	1.8215	NaN	1	1	Median	1.4641	1.4388	NaN	1	1	Median	1.358	1.4246	NaN	1	1	Median	971470000	430860000	540610000	277330000	101150000	176180000	248900000	119350000	129550000	243350000	121680000	121670000	201880000	88674000	113210000	5166	2043	4876	31825;31826;31827;31828;31829	43579;43580;43581;43582;43583	43582			5	
ATAEEMTK	1	Unmodified	879.40078	0.40078303	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	3	2	2	8.9091	6.8208	1;2	0.00024184	5835	160511_QHF_FH_JSI11i_1	117.04	89.511			0.82718	0.88734	24.12	8	0	Median	1.283	1.0618	NaN	1	0	Median	0.6583	0.77603	22.65	3	0	Plateau	0.92038	0.90085	27.523	2	0	Median	0.62603	0.65553	3.1055	2	0	Median	2101700000	1224500000	877110000	539750000	236480000	303270000	566610000	329930000	236680000	446420000	280930000	165490000	548860000	377190000	171670000	5167	3882	4877	31830;31831;31832;31833;31834;31835;31836;31837	43584;43585;43586;43587;43588;43589;43590;43591;43592	43585			8	
ATAEQISSQTGNK	1	Unmodified	1333.6474	0.64737232	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.65	8				2	3				2	4	3	4	15.349	12.314	2;3	6.8225E-135	10395	160511_QHF_FH_JSI10i_1	286.95	255.88			0.88018	0.91172	24.457	13	2	Median	1.2591	1.0391	9.0858	2	0	Median	0.79405	0.92269	24.035	4	1	Median	0.90523	0.86652	20.456	3	0	Median	1.1341	1.1908	35.15	4	1	Linear	1719600000	850300000	869330000	433150000	215820000	217340000	430580000	205050000	225540000	425190000	222480000	202710000	430700000	206960000	223740000	5168	2754	4878	31838;31839;31840;31841;31842;31843;31844;31845;31846;31847;31848;31849;31850	43593;43594;43595;43596;43597;43598;43599;43600;43601;43602;43603;43604;43605;43606;43607;43608;43609;43610	43601			16	
ATAEVLNIGK	1	Acetyl (Protein N-term)	1056.5815	0.58152458	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	4.57	4	2		3						2	1	2	4	69.647	66.671	2	1.2742E-38	1419	160513_QHF_FH_JSI9Kac_1	186.91	168.87			1.0167	1.0339	4.4542	7	1	Median	1.2169	0.99559	NaN	1	0	Median	0.85445	0.99147	NaN	1	0	Median	1.0362	1.0102	3.2807	2	0	Median	1.0307	1.1012	1.5866	3	1	Plateau	5528600000	2744400000	2784200000	1442000000	632100000	809850000	1358500000	738210000	620330000	1248400000	612260000	636180000	1479700000	761880000	717830000	5169	1206	4879	31851;31852;31853;31854;31855;31856;31857;31858;31859	43611;43612;43613;43614;43615;43616;43617;43618;43619;43620;43621;43622;43623;43624;43625;43626;43627;43628	43622			18	
ATAEVLNIGKK	2	Acetyl (Protein N-term)	1184.6765	0.6764876	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.6	4	4	2			2	3			3	5	3	4	58.006	54.869	2	1.7698E-18	49272	160511_QHF_FH_JSI10i_1	74.464	40.212			1.0983	1.1518	69.948	13	5	Median	2.8118	2.3372	98.467	3	2	Median	0.99381	1.1518	76.439	5	2	Median	1.0535	1.0432	20.345	3	1	Median	0.95076	1.0261	16.416	2	0	Median	2188300000	1086800000	1101500000	447940000	175950000	272000000	562990000	261330000	301670000	583230000	325830000	257410000	594100000	323670000	270430000	5170	1206	4880	31860;31861;31862;31863;31864;31865;31866;31867;31868;31869;31870;31871;31872;31873;31874	43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639;43640;43641;43642;43643;43644;43645;43646;43647;43648;43649;43650	43640			22	
ATAEVLNIGKK	2	Acetyl (K);Acetyl (Protein N-term)	1226.6871	0.68705229	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.484				3	5						2	3	3	77.303	68.829	2	4.3445E-15	27048	160513_QHF_FH_JSI10Kac_1	56.563	41.889			0.75484	0.78245	33.304	6	0	Median	NaN	NaN	NaN	0	0	Median	0.90695	1.0457	1.8686	2	0	Median	0.57308	0.54123	17.237	2	0	Median	0.73591	0.78245	29.777	2	0	Median	33595000	18684000	14911000	0	0	0	12885000	6320700	6564800	4903300	3336900	1566400	15806000	9026300	6780100	5171	1206	4880	31875;31876;31877;31878;31879;31880;31881;31882	43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661	43659	1075		11	
ATAFNEQVDK	1	Unmodified	1121.5353	0.53530267	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	2	3	2	24.03	21.628	2	8.7031E-19	18466	160511_QHF_FH_JSI9i_1	171.33	138.49			0.76221	0.78253	69.157	8	2	Median	0.57487	0.46569	NaN	1	0	Median	0.63095	0.73396	122.9	2	1	Median	1.2145	1.1752	82.277	3	1	Median	0.72651	0.78253	48.693	2	0	Median	1847700000	1092300000	755440000	411500000	248790000	162700000	465670000	291740000	173930000	634080000	353400000	280670000	336500000	198370000	138130000	5172	1293	4881	31883;31884;31885;31886;31887;31888;31889;31890	43662;43663;43664;43665;43666;43667;43668;43669;43670	43669			9	
ATAGAYIASQTVK	1	Unmodified	1279.6772	0.67721588	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.29	4	4	4		1	3	3	3	4	6	7	7	6	37.824	32.147	2	1.1433E-52	28932	160511_QHF_FH_JSI9i_2	212.89	185.41			1.0435	1.0781	14.526	24	2	Median	1.1655	0.99403	14.783	5	1	Median	0.96005	1.1467	9.6264	7	1	Median	0.9709	1.0023	12.795	7	0	Median	1.0513	1.1402	16.763	5	0	Median	5798300000	2948200000	2850100000	1087400000	468780000	618660000	1420800000	784870000	635900000	1860000000	930020000	930000000	1430100000	764530000	665530000	5173	1303	4882	31891;31892;31893;31894;31895;31896;31897;31898;31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912;31913;31914;31915;31916	43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709	43696			38	
ATAGAYIASQTVKK	2	Unmodified	1407.7722	0.7721789	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	4.38			12					1	1	7	2	2	3	28.433	26.927	2;3	2.023E-09	21780	160511_QHF_FH_JSI9i_3	102.4	87.71			1.1316	1.0926	68.196	11	3	Median	1.8149	1.4936	112.26	4	2	Median	0.91994	1.0681	9.863	2	0	Median	1.1536	1.0864	0.80756	2	0	Median	1.1584	1.1531	64.597	3	1	Median	1596100000	744680000	851430000	481450000	183540000	297920000	414230000	231380000	182860000	400800000	193290000	207510000	299620000	136480000	163150000	5174	1303	4883	31917;31918;31919;31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930	43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720;43721;43722;43723;43724;43725;43726;43727;43728	43722			19	
ATAGDTHLGGEDFDNR	0	Unmodified	1674.7234	0.72339081	954;1416;1108	P0DMV9;P0DMV8;P34931;P17066;P48741	HSPA1B;HSPA1A;HSPA1L;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.07	9	9	9				5	5	3	10	11	9	10	30.55	26.917	2;3	1.8023E-116	22619	160511_QHF_FH_JSI12i_2	304.51	302			0.88812	0.91816	9.1212	36	4	Median	1.109	0.949	6.9946	7	1	Median	0.74099	0.88741	7.771	10	2	Median	0.95095	0.92055	9.8324	9	0	Median	0.88015	0.94152	11.32	10	1	Median	22570000000	10928000000	11642000000	4777800000	2176100000	2601700000	7474100000	3928200000	3545900000	5994900000	2877200000	3117700000	4323400000	1946900000	2376500000	5175	954;1416;1108	4884	31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964;31965;31966;31967;31968;31969;31970	43729;43730;43731;43732;43733;43734;43735;43736;43737;43738;43739;43740;43741;43742;43743;43744;43745;43746;43747;43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810;43811;43812;43813;43814	43741			86	
ATAGDTHLGGEDFDNRLVNHFVEEFK	1	Unmodified	2917.3631	0.36309897	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1		By MS/MS	By MS/MS		3	0			4								1	3		89.698	89.469	4	0.0007148	78571	160511_QHF_FH_JSI11i_3	40.937	29.195			1.7827	1.3975	13.299	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.1186	1.3297	NaN	1	0	Median	1.7503	1.6762	14.951	3	2	Plateau	NaN	NaN	NaN	0	0	Median	86854000	29863000	56991000	0	0	0	8454100	3913700	4540400	78400000	25949000	52451000	0	0	0	5176	954	4885	31971;31972;31973;31974	43815;43816;43817;43818;43819	43817			5	
ATAHHLGLLK	1	Unmodified	1059.6189	0.61891314	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							2	1	3	6	20.125	19.72	2;3	0.00051288	16871	160511_QHF_FH_JSI9i_3	87.639	57.385			0.8544	0.94067	55.311	9	4	Median	1.1509	0.95444	54.764	2	2	Median	0.8217	0.94067	NaN	1	1	Median	1.329	1.2141	101.48	2	0	Median	0.97606	0.98579	58.116	4	1	Median	547350000	277110000	270240000	122280000	67248000	55033000	49214000	26362000	22852000	120010000	58915000	61091000	255850000	124580000	131260000	5177	5505	4886	31975;31976;31977;31978;31979;31980;31981;31982;31983;31984;31985;31986	43820;43821;43822;43823;43824;43825;43826;43827;43828;43829;43830	43825			10	
ATAISLMR	0	Unmodified	861.47422	0.47422274	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.518	37.732	2	0.010794	32056	160511_QHF_FH_JSI12i_3	54.776	30.574			0.76162	0.81188	15.067	4	1	Median	1.1862	0.96485	NaN	1	0	Median	0.7354	0.89418	NaN	1	1	Median	0.78878	0.73715	NaN	1	0	Median	0.69923	0.70505	NaN	1	0	Median	348050000	173850000	174190000	79908000	33607000	46301000	80357000	43679000	36679000	85440000	44158000	41282000	102340000	52411000	49929000	5178	116	4887	31987;31988;31989;31990	43831;43832	43832			2	
ATALVVQAVKK	2	Unmodified	1126.7074	0.7073938	3118	Q6PHR2	ULK3	Serine/threonine-protein kinase ULK3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			31.358	29.975	3	0.019791	24382	160511_QHF_FH_JSI9i_3	32.051	24.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5179	3118	4888	31991;31992	43833;43834	43834			2	
ATAMGKNYVNGK	2	Acetyl (K)	1294.634	0.63397086	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		37.104	27.574	2	0.00019009	16964	160513_QHF_FH_JSI11Kac_4	93.649	76.263			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5339200	5339200	0	0	0	0	880500	880500	0	4458700	4458700	0	0	0	0	5180	1265	4889	31993;31994	43835;43836	43836	1161;1162		2	
ATANHAAELLAK	1	Unmodified	1208.6513	0.65133548	2401	Q13415	ORC1	Origin recognition complex subunit 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	23.505	23.492	2;3	0.00088026	19356	160511_QHF_FH_JSI12i_3	77.744	34.302			1.4146	1.4345	43.31	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97188	0.91824	NaN	1	0	Median	0.96285	0.9777	61.035	2	1	Median	88162000	46406000	41757000	0	0	0	0	0	0	22668000	12889000	9778400	65495000	33516000	31978000	5181	2401	4890	31995;31996;31997	43837;43838	43838			2	
ATANLPSYNMDR	0	Unmodified	1351.619	0.61904908	4401	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.675	40.055	2	0.053082	36278	160511_QHF_FH_JSI12i_1	35.664	29.061			0.89922	0.92787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89922	0.92787	NaN	1	0	Median	52344000	28867000	23477000	0	0	0	0	0	0	0	0	0	52344000	28867000	23477000	5182	4401	4891	31998	43839	43839			1	
ATAPAVAK	1	Unmodified	727.42284	0.4228391	5821				yes	yes	0	0	0	0				By MS/MS	14	0							1						1	31.373	22.138	2	0.041572	13804	160513_QHF_FH_JSI12Kac_4	55.441	24.772	+		0.057668	0.062344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.057668	0.062344	NaN	1	1	Median	6920200	6375000	545150	0	0	0	0	0	0	0	0	0	6920200	6375000	545150	5183	5821	4892	31999	43840	43840			1	
ATAPAYKPGR	1	Unmodified	1030.556	0.55597854	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.556	9.845	3	0.028767	7458	160511_QHF_FH_JSI9i_3	31.843	16.692			1.3341	1.1047	NaN	1	0	Median	1.3341	1.1047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45676000	18230000	27445000	45676000	18230000	27445000	0	0	0	0	0	0	0	0	0	5184	3653	4893	32000	43841	43841			1	
ATAPDQK	1	Unmodified	729.36572	0.36571815	377	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.5664	4.4671	2	0.013116	2210	160511_QHF_FH_JSI11i_1	68.312	47.012			1.1194	1.1005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1194	1.1005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242760000	122780000	119980000	0	0	0	0	0	0	242760000	122780000	119980000	0	0	0	5185	377	4894	32001	43842	43842			1	
ATAPGPEGGGTLHPNPTDK	1	Unmodified	1815.8751	0.87514042	1885	P56945	BCAR1	Breast cancer anti-estrogen resistance protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	26.146	25.784	3	6.0859E-05	22990	160511_QHF_FH_JSI12i_1	61.102	48.957			0.74501	0.74937	58.265	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51656	0.49633	NaN	1	0	Median	1.0745	1.1314	NaN	1	0	Median	74385000	49224000	25161000	0	0	0	0	0	0	36559000	24262000	12296000	37826000	24962000	12864000	5186	1885	4895	32002;32003	43843;43844	43843			2	
ATAPQTQHVSPMR	0	Oxidation (M)	1438.6987	0.69869638	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.09		11	11					3		6	8	6	5	13.246	11.712	2;3	5.1319E-08	12609	160511_QHF_FH_JSI11i_3	140.91	94.747			0.94654	0.99797	23.007	25	1	Median	1.2875	1.1009	37.78	6	1	Median	0.89489	1.2203	11.223	8	0	Linear	0.97614	0.91622	8.5463	6	0	Median	0.74424	0.82243	15.328	5	0	Median	2665400000	1359200000	1306100000	437140000	207880000	229270000	932810000	453700000	479110000	703250000	360990000	342260000	592150000	336660000	255490000	5187	1327	4896	32004;32005;32006;32007;32008;32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027;32028	43845;43846;43847;43848;43849;43850;43851;43852;43853;43854;43855;43856;43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876;43877;43878	43851		972	33	
ATAPQTQHVSPMR	0	Unmodified	1422.7038	0.70378176	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.49	2	8	9					1	4	6	6	7	5	17.424	15.18	2;3	3.1789E-16	12900	160511_QHF_FH_JSI10i_2	164.68	149.81			0.92705	1.0506	15.618	23	1	Median	1.3352	1.1129	14.971	5	1	Median	0.89812	1.0944	6.8146	6	0	Median	0.95815	0.96524	15.388	7	0	Median	0.88707	0.99152	10.521	5	0	Median	7101600000	3711200000	3390400000	1389600000	572640000	816970000	2203900000	1176100000	1027900000	1999300000	1120000000	879280000	1508800000	842480000	666310000	5188	1327	4896	32029;32030;32031;32032;32033;32034;32035;32036;32037;32038;32039;32040;32041;32042;32043;32044;32045;32046;32047;32048;32049;32050;32051;32052	43879;43880;43881;43882;43883;43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895;43896;43897;43898;43899;43900;43901;43902;43903;43904;43905;43906;43907;43908;43909;43910;43911;43912;43913;43914;43915;43916;43917;43918;43919	43911			41	
ATAPVGGPK	1	Unmodified	796.4443	0.44430282	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	10.65	10.181	2	0.00041219	8090	160511_QHF_FH_JSI12i_1	81.191	57.004			0.8225	0.9726	19.409	3	0	Plateau	1.2046	0.9726	NaN	1	0	Median	1.044	1.2119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78418	0.82304	NaN	1	0	Median	209890000	109650000	100240000	60812000	28883000	31929000	70884000	39572000	31312000	0	0	0	78190000	41192000	36998000	5189	226	4897	32053;32054;32055	43920;43921;43922	43920			3	
ATAPVPTVGEGYGYGHESELSQASAAAR	0	Unmodified	2775.31	0.31000077	4498	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							2	2	3	3	57.314	56.602	3;4	1.1314E-82	48462	160511_QHF_FH_JSI12i_2	226.4	213.53			1.1896	1.125	14.135	10	1	Median	1.4942	1.2335	17.741	2	0	Median	0.7965	0.9758	18.937	2	1	Median	1.1914	1.1008	10.51	3	0	Median	1.0967	1.155	8.5035	3	0	Plateau	1887800000	880190000	1007600000	286590000	118460000	168130000	287480000	142710000	144770000	801360000	384200000	417170000	512370000	234830000	277540000	5190	4498	4898	32056;32057;32058;32059;32060;32061;32062;32063;32064;32065	43923;43924;43925;43926;43927;43928;43929;43930;43931;43932;43933;43934;43935;43936;43937;43938;43939	43927			17	
ATAPVSFNYYGVVTGPSASK	1	Unmodified	2015	6.5850998E-06	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	74.362	73.679	2;3	5.7341E-16	67069	160511_QHF_FH_JSI12i_1	151.9	120.67			1.6905	1.3704	39.993	3	3	Median	1.6905	1.3704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6165	1.6607	54.34	2	2	Median	219370000	88082000	131290000	50480000	19187000	31294000	0	0	0	0	0	0	168890000	68895000	99998000	5191	2992	4899	32066;32067;32068;32069	43940;43941;43942;43943	43941			4	
ATAPYNYSYIFK	1	Acetyl (Protein N-term)	1478.7082	0.70818166	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.445	89.011	2	3.6091E-08	81053	160511_QHF_FH_JSI12i_1	112.75	89.395			0.92494	0.86607	162.9	4	1	Median	1.0572	0.85449	NaN	1	0	Median	0.74978	0.8778	NaN	1	0	Median	23.032	22.349	NaN	1	1	Median	0.80924	0.84739	NaN	1	0	Median	746350000	326550000	419800000	175560000	80919000	94642000	212520000	119960000	92560000	124890000	4418700	120470000	233370000	121250000	112120000	5192	1938	4900	32070;32071;32072;32073	43944;43945;43946;43947;43948	43946			5	
ATAQDNPK	1	Unmodified	843.40865	0.4086456	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	14									1	5	3	5	0.45976	0.19477	2	0.00021531	182	160511_QHF_FH_JSI11i_1	119.29	79.188			1.0811	1.0579	62.396	13	2	Median	1.2214	0.98301	NaN	1	0	Median	2.048	2.45	54.015	4	0	Median	0.77791	0.76279	46.119	3	1	Median	1.0811	1.0975	41.827	5	1	Median	1038000000	487990000	550050000	20186000	9038200	11148000	322440000	108250000	214190000	270370000	153750000	116620000	425050000	216960000	208090000	5193	736	4901	32074;32075;32076;32077;32078;32079;32080;32081;32082;32083;32084;32085;32086;32087	43949;43950;43951;43952;43953;43954;43955;43956;43957;43958;43959;43960;43961;43962	43949			12	
ATASSSAQEMEQQLAER	0	Unmodified	1835.832	0.83195498	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		48.525	47.839	2	3.8658E-88	42612	160511_QHF_FH_JSI9i_1	218.16	195.24			0.76772	0.91405	28.513	3	2	Median	1.3678	1.1192	NaN	1	1	Median	0.76772	0.91405	NaN	1	0	Median	0.67333	0.63744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126940000	69697000	57241000	38504000	20086000	18418000	37298000	20466000	16832000	51137000	29145000	21992000	0	0	0	5194	4814	4902	32088;32089;32090;32091	43963;43964;43965;43966;43967	43967			5	
ATATIALQVNGQQGGGSEPAAAAAVVAAGDK	1	Acetyl (Protein N-term)	2835.4363	0.43626392	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	90.575	90.125	3	0.0042737	82047	160511_QHF_FH_JSI12i_1	31.252	24.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5195	5315	4903	32092	43968	43968			1	
ATATISAK	1	Unmodified	761.42832	0.42831841	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	11.478	4.2924	2	0.01978	4862	160513_QHF_FH_JSI11Kac_3	57.177	25.874			0.9126	0.93907	5.8053	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0085	0.97842	NaN	1	0	Median	0.82578	0.90131	NaN	1	0	Median	7334300	3654500	3679800	0	0	0	0	0	0	4225200	2065100	2160100	3109000	1589300	1519700	5196	5543	4904	32093;32094	43969;43970	43969			2	
ATATISAKPQITNPK	2	Unmodified	1539.8621	0.86205654	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	29.389	28.832	2;3	1.8857E-05	23958	160511_QHF_FH_JSI10i_3	119.65	107.5			1.2463	1.1746	26.19	5	1	Median	1.2513	1.0258	NaN	1	0	Median	1.0895	1.2371	NaN	1	0	Median	1.4169	1.3319	17.776	2	1	Median	0.75041	0.74559	NaN	1	0	Median	648680000	331160000	317520000	116500000	49873000	66626000	164040000	87022000	77018000	213900000	109310000	104590000	154240000	84953000	69289000	5197	5543	4905	32095;32096;32097;32098;32099	43971;43972;43973;43974;43975;43976;43977;43978	43975			8	
ATATISAKPQITNPK	2	Acetyl (K)	1581.8726	0.87262123	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					3	6					4	2	3	55.524	46.172	2;3	2.0283E-16	24853	160513_QHF_FH_JSI11Kac_3	143.79	118.94			1.0542	1.0364	22	7	0	Median	NaN	NaN	NaN	0	0	Median	1.1283	1.3496	34.536	3	0	Median	0.98692	0.96655	9.8632	2	0	Median	1.019	1.1141	11.207	2	0	Median	148240000	77205000	71035000	0	0	0	32142000	13548000	18593000	28695000	13599000	15097000	87404000	50058000	37345000	5198	5543	4905	32100;32101;32102;32103;32104;32105;32106;32107;32108	43979;43980;43981;43982;43983;43984;43985;43986;43987;43988;43989;43990	43980	3483		12	
ATATPVPPR	0	Acetyl (Protein N-term)	950.51853	0.5185304	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	5			5						4	2	2	2	36.759	30.106	2	2.6983E-05	27536	160511_QHF_FH_JSI9i_1	97.798	67.613			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5199	1180	4906	32109;32110;32111;32112;32113;32114;32115;32116;32117;32118	43991;43992;43993;43994;43995;43996;43997;43998;43999;44000	43994			10	
ATATQLLQHPFIK	1	Unmodified	1466.8245	0.82454882	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	61.817	61.013	3	1.7895E-05	50091	160511_QHF_FH_JSI9i_3	86.291	53.292			0.85791	0.95558	22.807	7	4	Median	1.0044	0.83995	23.525	2	1	Median	0.7169	0.84699	20.108	2	1	Median	0.77974	0.75693	42.241	2	1	Median	0.93874	0.95558	NaN	1	1	Median	1093400000	548290000	545080000	184140000	84654000	99488000	197750000	115900000	81851000	298220000	134980000	163240000	413260000	212760000	200500000	5200	2368	4907	32119;32120;32121;32122;32123;32124;32125	44001;44002;44003;44004;44005;44006;44007;44008	44004			8	
ATAVLVIASTDVDK	1	Unmodified	1401.7715	0.7715102	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.915	62.997	2	0.00093095	54937	160511_QHF_FH_JSI11i_2	67.385	50.359			1.0971	1.1346	0.76483	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1951	1.1408	NaN	1	0	Median	1.0072	1.1285	NaN	1	0	Median	45432000	22987000	22445000	0	0	0	0	0	0	15166000	8313500	6852300	30266000	14674000	15592000	5201	4535	4908	32126;32127	44009;44010;44011	44011			3	
ATAVMPDGQFK	1	Unmodified	1163.5645	0.56449431	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.61	5.9	8	4	4			1	3	2	1	6	5	6	6	41.61	37.903	2	2.7094E-30	34049	160511_QHF_FH_JSI11i_1	195.7	184.21			1.0268	1.024	32.358	22	6	Median	1.0976	0.89882	30.553	5	0	Median	0.86174	1.0325	26.122	5	2	Median	1.0429	1.0103	37.544	6	1	Median	1.0617	1.1059	35.416	6	3	Median	69588000000	33148000000	36439000000	8703200000	3513400000	5189800000	25352000000	12394000000	12959000000	15776000000	7518300000	8257900000	19756000000	9722800000	10033000000	5202	2249	4909	32128;32129;32130;32131;32132;32133;32134;32135;32136;32137;32138;32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150	44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022;44023;44024;44025;44026;44027;44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043;44044;44045;44046;44047;44048;44049;44050	44015			38	
ATAVMPDGQFK	1	Oxidation (M)	1179.5594	0.55940893	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	5.84	9	2	4		4	6	3	2		8	6	6	10	31.675	26.088	2	1.6365E-47	34565	160511_QHF_FH_JSI12i_1	216.12	182.86			1.0342	1.046	23.76	24	7	Median	1.3098	1.066	12.126	6	2	Median	0.88115	1.0266	9.4461	5	2	Median	1.1072	1.0968	8.0508	4	1	Median	0.94825	1.0355	38.2	9	2	Median	8495100000	3772900000	4722200000	3182700000	1294900000	1887800000	815540000	439760000	375770000	859920000	422970000	436950000	3636900000	1615200000	2021700000	5203	2249	4909	32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162;32163;32164;32165;32166;32167;32168;32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180	44051;44052;44053;44054;44055;44056;44057;44058;44059;44060;44061;44062;44063;44064;44065;44066;44067;44068;44069;44070;44071;44072;44073;44074;44075;44076;44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100	44064		1861	48	
ATAVVDGAFK	1	Unmodified	977.5182	0.51819605	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.77	9	4	6				3	3	1	6	7	6	7	35.646	32.434	2	2.016E-18	18762	160513_QHF_FH_JSI10Kac_4	174.41	126.56			0.87676	0.96703	37.365	26	7	Median	1.2008	0.99432	40.597	6	2	Median	0.82253	0.95632	47.863	7	1	Median	0.82155	0.82231	21.475	6	2	Median	0.97988	0.99799	37.029	7	2	Median	22611000000	10535000000	12075000000	6999600000	3138700000	3860900000	5337600000	2638200000	2699500000	5079600000	2319400000	2760200000	5193700000	2438900000	2754800000	5204	1390	4910	32181;32182;32183;32184;32185;32186;32187;32188;32189;32190;32191;32192;32193;32194;32195;32196;32197;32198;32199;32200;32201;32202;32203;32204;32205;32206	44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111;44112;44113;44114;44115;44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129;44130;44131;44132;44133;44134;44135;44136;44137;44138;44139;44140;44141;44142;44143;44144;44145;44146;44147	44119			47	
ATAVVDGAFKEVK	2	Acetyl (K)	1375.7347	0.73473076	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.497						5	4				2	5	2	64.403	54.222	2;3	5.9049E-08	27946	160513_QHF_FH_JSI10Kac_3	113.63	76.285			0.52516	0.5355	118.89	6	1	Median	NaN	NaN	NaN	0	0	Median	1.2414	1.4613	31.459	2	0	Median	0.40291	0.39237	110.34	3	1	Median	0.64122	0.68147	NaN	1	0	Median	47935000	31376000	16559000	0	0	0	14806000	7318400	7487500	21576000	17660000	3916300	11553000	6397500	5155800	5205	1390	4911	32207;32208;32209;32210;32211;32212;32213;32214;32215	44148;44149;44150;44151;44152;44153;44154;44155;44156;44157	44157	1345		10	
ATCAPQHGAPGPGPADASK	1	Unmodified	1788.8213	0.82133071	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.98	6	5	4				2			2	5	6	4	14.912	13.386	2;3	1.2057E-18	10892	160511_QHF_FH_JSI12i_2	148.38	132.87			0.84644	0.92183	25.071	14	3	Median	1.0861	0.92813	NaN	1	0	Median	0.93553	1.1283	19.493	4	1	Median	0.77908	0.77103	3.2356	5	0	Median	1.2389	1.2967	20.859	4	2	Median	2235100000	1107700000	1127400000	137740000	69716000	68028000	573540000	279590000	293960000	893270000	522990000	370280000	630520000	235380000	395140000	5206	1192	4912	32216;32217;32218;32219;32220;32221;32222;32223;32224;32225;32226;32227;32228;32229;32230;32231;32232	44158;44159;44160;44161;44162;44163;44164;44165;44166;44167;44168;44169;44170;44171;44172;44173;44174;44175;44176;44177;44178;44179;44180;44181;44182;44183;44184;44185;44186;44187	44165			30	
ATCFAYGQTGSGK	1	Unmodified	1346.5925	0.59249998	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.899	24.361	2	0.00023104	21256	160511_QHF_FH_JSI10i_1	72.34	58.906			1.9015	1.9074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9015	1.9074	NaN	1	1	Median	27322000	8752200	18570000	0	0	0	0	0	0	0	0	0	27322000	8752200	18570000	5207	4300	4913	32233;32234;32235	44188;44189;44190	44190			3	
ATCIGNNSAAAVSMLK	1	Unmodified	1606.7807	0.78071145	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.42	4	4	3				2			2	4	4	3	56.211	53.837	2	2.4993E-26	46413	160511_QHF_FH_JSI11i_2	226.59	201.8			0.87075	0.86445	40.25	12	8	Median	1.0972	0.91256	17.331	2	2	Median	0.60635	0.69283	20.921	3	2	Median	0.87075	0.86445	51.894	4	2	Median	1.2224	1.2879	63.335	3	2	Plateau	1863600000	1060100000	803460000	182500000	99349000	83147000	396470000	242260000	154210000	719030000	399120000	319910000	565570000	319380000	246190000	5208	1267	4914	32236;32237;32238;32239;32240;32241;32242;32243;32244;32245;32246;32247;32248	44191;44192;44193;44194;44195;44196;44197;44198;44199;44200;44201;44202;44203;44204;44205;44206;44207	44205			17	
ATDAEADVASLNR	0	Unmodified	1331.6317	0.63172225	73;886;929	CON__Q3SX28;P07951;P09493	TPM2;TPM1	Tropomyosin beta chain;Tropomyosin alpha-1 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	33.073	32.523	2	5.739E-08	28999	160511_QHF_FH_JSI10i_1	189.17	162.16		+	0.80391	0.82395	6.6935	5	4	Median	0.9537	0.77926	NaN	1	1	Median	0.74422	0.87494	8.4919	2	2	Median	0.89365	0.86333	NaN	1	1	Median	0.80391	0.81378	NaN	1	0	Median	899800000	499820000	399980000	127420000	65318000	62102000	428520000	243940000	184580000	212380000	126250000	86131000	131490000	64320000	67167000	5209	73;886;929	4915	32249;32250;32251;32252;32253	44208;44209;44210;44211;44212;44213	44212			6	
ATDAEADVASLNRR	0	Unmodified	1487.7328	0.73283328	73;886;929	CON__Q3SX28;P07951;P09493	TPM2;TPM1	Tropomyosin beta chain;Tropomyosin alpha-1 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.81	3	4	3					1		2	2	4	3	29.014	27.698	2;3	2.5013E-05	23219	160511_QHF_FH_JSI12i_3	108.66	100.48		+	1.0726	1.0228	8.8175	11	0	Median	1.1512	0.96365	4.2136	2	0	Median	0.75957	0.91394	8.7905	2	0	Median	1.0667	1.0776	2.3974	4	0	Linear	1.0726	1.099	10.201	3	0	Median	1931500000	970630000	960860000	389940000	184440000	205500000	444010000	262010000	182000000	728930000	346580000	382350000	368600000	177600000	191010000	5210	73;886;929	4916	32254;32255;32256;32257;32258;32259;32260;32261;32262;32263;32264	44214;44215;44216;44217;44218;44219;44220;44221;44222;44223;44224;44225	44225			12	
ATDAMAHVAGFTVAHDVSAR	0	Unmodified	2025.9691	0.96905758	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	52.384	51.798	3;4	1.1129E-11	44220	160511_QHF_FH_JSI12i_3	145.19	138.42			1.0439	1.0164	11.977	9	3	Median	1.3462	1.1369	NaN	1	0	Median	0.80385	0.97374	11.299	2	1	Median	1.0439	1.0164	2.529	3	1	Plateau	1.1354	1.179	15.447	3	1	Median	814350000	416960000	397380000	49706000	26536000	23171000	116220000	62813000	53405000	298040000	147490000	150550000	350380000	180120000	170260000	5211	4092	4917	32265;32266;32267;32268;32269;32270;32271;32272;32273	44226;44227;44228;44229;44230;44231;44232;44233;44234;44235	44235			10	
ATDDLINVTGR	0	Unmodified	1173.599	0.59896556	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		44.029	43.637	2	0.00088164	39440	160511_QHF_FH_JSI11i_1	78.653	66.026			0.99492	0.97512	2.3853	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.82447	0.97512	NaN	1	1	Median	0.97713	0.9633	3.2231	2	2	Median	NaN	NaN	NaN	0	0	Median	361450000	176980000	184470000	0	0	0	110560000	56713000	53843000	250900000	120270000	130630000	0	0	0	5212	5360	4918	32274;32275;32276;32277	44236;44237;44238;44239	44237			4	
ATDELATK	1	Acetyl (Protein N-term)	889.43928	0.43927702	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	26.798	25.895	2	0.00086132	22412	160511_QHF_FH_JSI9i_1	82.241	62.678			3.8762	3.5457	12.241	2	2	Median	4.7288	3.8662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1773	3.2517	NaN	1	1	Median	173260000	31061000	142200000	104590000	17077000	87513000	0	0	0	0	0	0	68673000	13984000	54689000	5213	3998	4919	32278;32279;32280	44240;44241;44242	44242			3	
ATDELATKLSR	1	Acetyl (K);Acetyl (Protein N-term)	1287.667	0.66704513	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	1	2	77.306	68.823	2	2.0484E-16	29829	160513_QHF_FH_JSI12Kac_2	142.83	115.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5214	3998	4920	32281;32282;32283;32284;32285	44243;44244;44245;44246;44247	44247	3023		5	
ATDFDVLSYKK	2	Unmodified	1285.6554	0.65541781	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	51.216	50.236	3	0.01396	43276	160511_QHF_FH_JSI11i_2	34.179	25.666			0.82846	1.0537	22.437	4	0	Linear	0.75999	0.65239	NaN	1	0	Median	0.74823	0.91378	NaN	1	0	Median	1.1026	1.0876	NaN	1	0	Median	0.90311	1.0016	NaN	1	0	Median	294930000	157300000	137630000	59433000	31007000	28426000	76443000	37530000	38913000	80961000	46583000	34378000	78091000	42179000	35913000	5215	4991	4921	32286;32287;32288;32289	44248;44249	44248			1	
ATDFVADR	0	Unmodified	893.4243	0.42429566	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	19.623	19.119	2	0.053499	16653	160511_QHF_FH_JSI12i_1	36.506	16.72			1.3498	1.3533	8.9019	4	0	Median	1.5979	1.3069	NaN	1	0	Median	1.2808	1.5052	NaN	1	0	Median	1.4225	1.4013	NaN	1	0	Median	1.1885	1.2243	NaN	1	0	Median	495840000	193550000	302290000	128270000	41949000	86325000	141680000	56677000	85006000	114600000	44948000	69655000	111280000	49976000	61305000	5216	1635	4922	32290;32291;32292;32293	44250	44250			1	
ATDFVVPGPGK	1	Unmodified	1086.571	0.5709599	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.58	4	4	3			3	3			3	6	4	4	48.803	44.434	2	1.6194E-09	40137	160511_QHF_FH_JSI12i_1	133.57	113.79			0.92909	0.97843	21.835	16	1	Median	1.1803	0.97364	11.86	3	0	Median	0.84863	1.038	19.143	5	1	Median	0.89453	0.88123	34.371	4	0	Median	0.97506	1.0468	18.062	4	0	Median	6315100000	3279800000	3035300000	1473300000	620470000	852840000	1657200000	926160000	731050000	1661300000	967470000	693790000	1523300000	765660000	757610000	5217	576	4923	32294;32295;32296;32297;32298;32299;32300;32301;32302;32303;32304;32305;32306;32307;32308;32309;32310	44251;44252;44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263;44264;44265;44266;44267;44268;44269;44270;44271;44272;44273;44274	44256			24	
ATDGVTLTGINQTGDQSLPSK	1	Unmodified	2102.0491	0.049141622	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.998	57.346	2	1.2591E-162	52058	160511_QHF_FH_JSI11i_1	305.4	278.68			1.0266	1.0415	10.716	4	0	Median	1.3487	1.1081	NaN	1	0	Median	0.84251	0.97891	NaN	1	0	Median	0.9542	0.93081	NaN	1	0	Median	1.1044	1.173	NaN	1	0	Median	195490000	90331000	105160000	43382000	18097000	25286000	49093000	21295000	27798000	53461000	29249000	24212000	49558000	21690000	27867000	5218	5435	4924	32311;32312;32313;32314	44275;44276;44277;44278;44279;44280	44276			6	
ATDILPK	1	Unmodified	756.43815	0.43815481	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.86	4	2				3	1			2	3	2	3	30.219	26.258	2	0.0055575	22915	160511_QHF_FH_JSI11i_1	94.407	59.302			0.88106	0.98513	17.574	10	0	Median	1.0415	0.87026	32.982	2	0	Median	0.88224	1.0194	22.648	3	0	Median	1.111	1.0846	1.0946	2	0	Median	0.86499	0.90714	6.2047	3	0	Median	2579700000	1383100000	1196500000	602880000	282380000	320500000	700820000	376720000	324100000	664760000	378710000	286060000	611210000	345330000	265880000	5219	2328	4925	32315;32316;32317;32318;32319;32320;32321;32322;32323;32324	44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291;44292	44282			12	
ATDILPKWLR	1	Acetyl (K)	1253.7132	0.71320746	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.098	74.781	2	0.0046507	41341	160513_QHF_FH_JSI11Kac_6	76.465	63.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34968000	34968000	0	0	0	0	0	0	0	34968000	34968000	0	0	0	0	5220	2328	4926	32325	44293	44293	2420		1	
ATDKSFVEK	2	Acetyl (K)	1065.5342	0.53424004	1436;1445;3263	P35579;Q7Z406;P35749	MYH9;MYH14;MYH11	Myosin-9;Myosin-14;Myosin-11	no	no	1	0	0	1			By MS/MS		13	0						1						1		35.865	26.929	2	0.001104	15860	160513_QHF_FH_JSI11Kac_3	90.15	39.544			3.8768	3.7645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8768	3.7645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9598700	4189300	5409400	0	0	0	0	0	0	9598700	4189300	5409400	0	0	0	5221	1436;3263;1445	4927	32326	44294	44294	1396;1397		1	
ATDLGGTSQAGTSQR	0	Unmodified	1448.6855	0.68554874	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	14.095	11.347	2	4.8825E-98	9663	160511_QHF_FH_JSI11i_1	262.15	247.46			1.0026	1.0069	7.8902	6	0	Median	1.1948	0.99078	NaN	1	0	Median	0.85415	1.0069	1.0595	2	0	Median	1.1698	1.1386	8.6444	2	0	Median	0.92165	0.98712	NaN	1	0	Median	949370000	474960000	474410000	215270000	100090000	115180000	216780000	113870000	102910000	251740000	123780000	127970000	265580000	137220000	128360000	5222	3250	4928	32327;32328;32329;32330;32331;32332	44295;44296;44297;44298;44299;44300;44301;44302;44303	44296			9	
ATDLILDHIR	0	Unmodified	1165.6455	0.64552182	3383	Q86Y79	PTRH1	Probable peptidyl-tRNA hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	53.603	52.622	3	0.00037127	45460	160511_QHF_FH_JSI11i_2	63.32	47.73			1.2198	1.2467	25.024	5	5	Median	1.6892	1.4763	23.908	2	2	Median	0.72093	0.87164	NaN	1	1	Median	1.116	1.1745	NaN	1	1	Median	1.2198	1.3338	NaN	1	1	Median	106100000	48815000	57289000	28574000	10803000	17771000	20633000	10224000	10409000	37758000	18105000	19653000	19138000	9682600	9455600	5223	3383	4929	32333;32334;32335;32336;32337	44304;44305;44306;44307;44308	44307			5	
ATDPSQVPDVISSIR	0	Unmodified	1583.8155	0.81550028	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			68.327	67.684	2	2.18E-05	60136	160511_QHF_FH_JSI9i_1	118.87	93.429			0.54123	0.52916	39.143	2	2	Median	0.49366	0.40122	NaN	1	1	Median	0.59338	0.69789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84014000	54632000	29382000	55481000	37173000	18308000	28533000	17459000	11074000	0	0	0	0	0	0	5224	413	4930	32338;32339	44309;44310	44310			2	
ATDSWALAVDEQEAAAESLSNLHLK	1	Acetyl (Protein N-term)	2710.3086	0.30860379	5423	Q9UMR2	DDX19B	ATP-dependent RNA helicase DDX19B	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			101.73	101.7	3	1.2174E-23	92425	160511_QHF_FH_JSI10i_1	81.477	70.934			0.95541	1.1049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95541	1.1049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202540000	96867000	105670000	0	0	0	202540000	96867000	105670000	0	0	0	0	0	0	5225	5423	4931	32340	44311	44311			0	
ATDSWALAVDEQEAAVK	1	Acetyl (Protein N-term)	1844.8792	0.87922275	5017	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.13	85.677	2	1.0258E-22	76212	160511_QHF_FH_JSI9i_1	86.772	70.883			1.108	1.1081	3.4942	4	0	Median	1.2731	1.0427	NaN	1	0	Median	0.95819	1.1237	NaN	1	0	Median	1.1195	1.0943	NaN	1	0	Median	1.0966	1.1221	NaN	1	0	Median	335860000	158560000	177300000	100980000	44943000	56039000	83530000	41870000	41661000	85924000	40981000	44944000	65427000	30766000	34661000	5226	5017	4932	32341;32342;32343;32344	44312;44313;44314;44315;44316;44317;44318;44319;44320;44321;44322;44323	44323			12	
ATDTINSQGQFPSYLETVTK	1	Unmodified	2199.0695	0.069542713	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	75.206	74.724	2;3	6.3328E-100	66439	160511_QHF_FH_JSI9i_1	264	243.62			1.0263	0.92488	16.23	7	0	Median	1.0377	0.85807	3.1291	2	0	Median	0.74211	0.86065	10.179	2	0	Median	1.0311	0.99907	4.4246	2	0	Median	1.2401	1.3023	NaN	1	0	Median	382650000	202990000	179660000	94731000	50101000	44630000	131180000	77476000	53706000	127040000	61807000	65235000	29697000	13607000	16090000	5227	3382	4933	32345;32346;32347;32348;32349;32350;32351	44324;44325;44326;44327;44328;44329;44330;44331;44332;44333;44334;44335;44336;44337	44336			14	
ATDTLDSTGR	0	Unmodified	1035.4833	0.4832671	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	10.494	10.246	2	0.0056218	8119	160511_QHF_FH_JSI12i_1	53.751	28.932			0.79685	0.89094	19.342	3	1	Median	NaN	NaN	NaN	0	0	Median	0.75969	0.89094	NaN	1	1	Median	1.2588	1.2044	NaN	1	0	Median	0.79685	0.83975	NaN	1	0	Median	123950000	62535000	61417000	0	0	0	40727000	22003000	18724000	37734000	18802000	18931000	45491000	21730000	23762000	5228	3798	4934	32352;32353;32354	44338;44339	44338			2	
ATDTSQGELVHPK	1	Acetyl (Protein N-term)	1423.6943	0.69432251	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	30.195	27.935	2	8.8726E-42	24392	160511_QHF_FH_JSI9i_1	114.4	99.735			1.0743	1.0266	9.0697	4	0	Median	1.1206	0.91283	NaN	1	0	Median	0.81665	0.96975	NaN	1	0	Median	1.1385	1.1013	NaN	1	0	Median	1.03	1.0868	NaN	1	0	Median	864260000	423800000	440470000	172910000	73853000	99060000	261230000	142690000	118540000	212940000	99900000	113040000	217180000	107360000	109820000	5229	2927	4935	32355;32356;32357;32358;32359	44340;44341;44342;44343;44344;44345;44346;44347;44348	44348			9	
ATEDGTPYDPYK	1	Unmodified	1355.5881	0.5881261	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	33.173	29.793	2	0.00011545	25985	160511_QHF_FH_JSI9i_1	103.7	96.572			1.0906	1.065	14.371	6	2	Median	1.0989	0.89608	NaN	1	0	Median	0.86224	1.0004	11.41	2	0	Median	1.144	1.1006	7.2281	2	1	Median	1.2831	1.3175	NaN	1	1	Median	635070000	288850000	346220000	132240000	57264000	74973000	162520000	80803000	81719000	152380000	64536000	87841000	187930000	86248000	101680000	5230	1201	4936	32360;32361;32362;32363;32364;32365	44349;44350;44351;44352;44353;44354;44355;44356	44355			8	
ATEEFIIR	0	Acetyl (Protein N-term)	1019.5288	0.52876073	2573	Q14764	MVP	Major vault protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.228	67.651	2	0.00043248	61399	160511_QHF_FH_JSI12i_1	102.71	83.908			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5231	2573	4937	32366;32367;32368;32369	44357;44358;44359;44360	44358			4	
ATEEPEDVRSEAALDQEQITAAYSVEHNQLEAHPK	1	Unmodified	3904.8351	0.83513269	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		67.36	66.597	5	1.2946E-26	58933	160511_QHF_FH_JSI10i_2	103.73	101.48			0.83768	1.0176	25.498	3	1	Plateau	1.0904	0.93334	NaN	1	0	Median	0.83768	1.0176	NaN	1	0	Median	1.5144	1.506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	232340000	115150000	117190000	59700000	30175000	29525000	140410000	74625000	65789000	32224000	10348000	21876000	0	0	0	5232	5646	4938	32370;32371;32372	44361;44362;44363;44364;44365	44363			5	
ATEEQLK	1	Unmodified	817.41815	0.41814765	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	8.3868	5.7058	2	0.0088278	5385	160511_QHF_FH_JSI10i_1	81.784	28.23		+	0.63163	0.67301	33.82	6	0	Median	1.2507	1.0348	NaN	1	0	Median	0.77003	0.90964	33.354	2	0	Median	0.63129	0.61463	3.5773	2	0	Median	0.44669	0.47666	NaN	1	0	Median	2479500000	1409600000	1069900000	549600000	217090000	332520000	625090000	351510000	273580000	641580000	406530000	235040000	663260000	434490000	228770000	5233	50	4939	32373;32374;32375;32376;32377;32378	44366;44367;44368;44369;44370;44371;44372;44373;44374	44371			9	
ATEGMVVADK	1	Unmodified	1019.4957	0.49574604	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.66	4	1	1			4				3	3	2	2	22.796	17.933	2	7.1129E-10	17555	160511_QHF_FH_JSI12i_1	138.08	92.998			1.056	1.1239	57.362	9	3	Median	1.2176	0.98887	19.828	2	1	Median	0.60419	0.71763	92.753	3	2	Median	1.0505	1.0278	15.284	2	0	Median	1.0695	1.1336	1.2156	2	0	Median	3605700000	1905000000	1700700000	933200000	460330000	472870000	818740000	462670000	356070000	854810000	451720000	403090000	998930000	530290000	468640000	5234	4267	4940	32379;32380;32381;32382;32383;32384;32385;32386;32387;32388	44375;44376;44377;44378;44379;44380;44381;44382;44383;44384;44385;44386;44387;44388	44377			14	
ATEGMVVADK	1	Oxidation (M)	1035.4907	0.49066067	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				1	3	3	2	14.842	10.56	2	0.00077271	17092	160511_QHF_FH_JSI9i_1	72.275	49.535			1.0481	1.0989	19.45	9	0	Median	1.7367	1.4019	NaN	1	0	Median	0.96513	1.1284	26.56	3	0	Median	1.0481	1.0357	11.53	3	0	Median	1.0173	1.0653	21.947	2	0	Median	496270000	241430000	254840000	234550000	102820000	131730000	114800000	67237000	47566000	74040000	37859000	36182000	72881000	33510000	39371000	5235	4267	4940	32389;32390;32391;32392;32393;32394;32395;32396;32397	44389;44390;44391;44392;44393;44394;44395;44396;44397;44398	44395		2421	10	
ATEHPEPPK	1	Acetyl (Protein N-term)	1046.5033	0.50327426	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	15.08	14.555	2	9.5919E-05	12270	160511_QHF_FH_JSI12i_1	34.312	24.918			1.4093	1.1665	4.2843	3	0	Plateau	1.4093	1.1665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2347	1.221	NaN	1	0	Median	1.0767	1.1208	NaN	1	0	Median	364240000	160940000	203310000	141280000	52715000	88569000	0	0	0	112690000	54315000	58377000	110270000	53906000	56360000	5236	2412	4941	32398;32399;32400	44399;44400;44401	44400			2	
ATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQK	1	Acetyl (Protein N-term)	3992.8698	0.86980363	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		100.41	100.25	3	9.0548E-48	90900	160511_QHF_FH_JSI11i_1	52.155	50.647			1.1079	0.96775	1.1875	2	0	Median	1.2145	0.95966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0106	0.97591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	87109000	44890000	42219000	25704000	12422000	13282000	0	0	0	61405000	32468000	28937000	0	0	0	5237	423	4943	32401;32402	44402;44403	44402			2	
ATEIIEPSK	1	Unmodified	986.52843	0.52842638	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	25.228	23.422	2	2.6438E-05	20071	160511_QHF_FH_JSI9i_1	104.06	83.502			0.90169	0.9271	48.759	6	1	Median	3.0472	2.5269	NaN	1	0	Median	0.59544	0.69345	16.601	2	1	Median	0.93761	0.92542	NaN	1	0	Median	0.98148	1.0512	17.512	2	0	Median	1025800000	505620000	520190000	200670000	87532000	113130000	364780000	194840000	169930000	177520000	90141000	87379000	282850000	133110000	149740000	5238	5445	4944	32403;32404;32405;32406;32407;32408	44404;44405;44406;44407;44408;44409;44410	44409			7	
ATELAVK	1	Unmodified	730.4225	0.42250475	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.461	15.003	2	0.019269	12274	160511_QHF_FH_JSI11i_1	58.604	13.883			0.68884	0.82991	7.9673	4	0	Linear	0.8234	0.67923	NaN	1	0	Median	0.68097	0.80534	NaN	1	0	Median	0.76173	0.75077	NaN	1	0	Median	0.75215	0.80242	NaN	1	0	Median	1638300000	878580000	759700000	319180000	136050000	183130000	498670000	289970000	208700000	401840000	234390000	167450000	418590000	218170000	200420000	5239	264	4945	32409;32410;32411;32412	44411;44412	44411			2	
ATELFVQCLATYSYR	0	Unmodified	1820.8767	0.87672033	4953	Q9NRG0	CHRAC1	Chromatin accessibility complex protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	7		2							2		1	2	1	85.332	80.351	2	2.4794E-43	41321	160513_QHF_FH_JSI11Kac_6	182.07	159.54			0.96877	0.99939	39.739	4	2	Median	NaN	NaN	NaN	0	0	Median	1.3311	1.6368	NaN	1	1	Median	0.77428	0.74752	4.4238	2	1	Median	1.1789	1.295	NaN	1	0	Median	55168000	31176000	23991000	0	0	0	9220800	5617700	3603100	31327000	19028000	12299000	14619000	6530100	8089300	5240	4953	4946	32413;32414;32415;32416	44413;44414;44415;44416	44413			4	
ATEMLIFGK	1	Unmodified	1008.5314	0.53140327	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.44	1	6					2	5		3	3	4	4	68.334	62.152	2	1.7618E-06	54508	160511_QHF_FH_JSI9i_2	130.22	111.49			0.94423	0.97738	23.857	11	1	Median	0.86043	0.73238	26.346	2	0	Median	0.61652	0.75935	32.704	3	0	Plateau	0.99381	0.99788	25.582	3	1	Median	0.94423	1.0252	5.0967	3	0	Median	1057900000	539530000	518330000	183430000	80002000	103430000	316730000	175670000	141060000	313620000	161870000	151750000	244080000	121980000	122100000	5241	538	4947	32417;32418;32419;32420;32421;32422;32423;32424;32425;32426;32427;32428;32429;32430	44417;44418;44419;44420;44421;44422;44423;44424;44425;44426;44427;44428;44429;44430	44422			14	
ATEMLIFGK	1	Oxidation (M)	1024.5263	0.52631789	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		57.158	46.311	2	0.039204	25481	160513_QHF_FH_JSI11Kac_5	53.968	45.105			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5242	538	4947	32431	44431	44431			1	
ATEMVEVGADDDEGGAERGEAGDLR	0	Unmodified	2548.0984	0.098353014	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	44.762	44.275	3	1.3837E-24	40217	160511_QHF_FH_JSI12i_1	151.01	150.39			0.99243	1.1911	8.8544	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87866	1.0232	NaN	1	0	Median	1.2253	1.1911	NaN	1	0	Median	1.1209	1.1945	NaN	1	0	Median	866330000	442080000	424250000	0	0	0	378330000	209780000	168540000	144960000	63581000	81381000	343040000	168720000	174330000	5243	3085	4948	32432;32433;32434;32435	44432;44433;44434;44435;44436	44435			5	
ATENDIANFFSPLNPIR	0	Unmodified	1917.9585	0.95847612	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	101.3	101.19	2;3	1.6452E-171	91898	160511_QHF_FH_JSI11i_1	353.02	319.43			0.9007	0.93619	19.432	6	6	Median	0.84676	0.72246	NaN	1	1	Median	0.85426	1.0532	24.546	2	2	Median	1.0056	0.98989	NaN	1	1	Median	0.84831	0.92858	17.448	2	2	Median	1196200000	644000000	552220000	254240000	139700000	114530000	377650000	204460000	173200000	137350000	61143000	76210000	426970000	238700000	188280000	5244	1382	4949	32436;32437;32438;32439;32440;32441	44437;44438;44439;44440;44441;44442	44437			6	
ATENDIYNFFSPLNPMR	0	Oxidation (M)	2043.936	0.93602612	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	97.433	97.031	3	0.020423	83460	160511_QHF_FH_JSI12i_2	38.227	28.697			2.2054	2.2922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2054	2.2922	NaN	1	1	Median	3801500	509170	3292400	0	0	0	0	0	0	0	0	0	3801500	509170	3292400	5245	1864	4950	32442	44443	44443		1543	1	
ATENDIYNFFSPLNPMR	0	Unmodified	2027.9411	0.9411115	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.47	101.34	3	2.4057E-05	89066	160511_QHF_FH_JSI11i_2	89.261	79.303			0.81314	0.81263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81314	0.81263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	237850000	144980000	92876000	0	0	0	0	0	0	237850000	144980000	92876000	0	0	0	5246	1864	4950	32443	44444	44444			1	
ATENDIYNFFSPLNPVR	0	Unmodified	1995.969	0.96904081	1383;1775	P31943;P52597	HNRNPH1;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.774	8	8	5							6	5	6	4	101.21	101.11	2;3	0	91818	160511_QHF_FH_JSI10i_1	402.3	357.22			1.0389	1.0509	24.809	20	3	Median	1.2181	1.0053	2.9658	5	0	Median	0.8735	1.048	45.53	5	1	Median	1.042	1.0186	17.091	6	2	Median	1.0389	1.1528	5.4413	4	0	Median	16652000000	8391600000	8260300000	2828500000	1296100000	1532400000	4692700000	2581400000	2111300000	5678000000	2782900000	2895100000	3452600000	1731100000	1721500000	5247	1383;1775	4951	32444;32445;32446;32447;32448;32449;32450;32451;32452;32453;32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464	44445;44446;44447;44448;44449;44450;44451;44452;44453;44454;44455;44456;44457;44458;44459;44460;44461;44462;44463;44464;44465;44466;44467;44468	44455			24	
ATENPEQVASEGLPEPVLR	0	Unmodified	2035.0222	0.02219859	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	70.812	70.28	2;3	2.6335E-32	63973	160511_QHF_FH_JSI12i_1	230.16	209.31			0.98746	0.9512	14.916	8	1	Median	1.1964	0.99301	28.859	2	0	Median	0.73015	0.86927	12.246	2	0	Median	1.0268	0.98148	3.94	2	1	Median	0.93029	0.97367	18.154	2	0	Median	425660000	208390000	217270000	123990000	52578000	71416000	89511000	52360000	37151000	112670000	55258000	57417000	99477000	48195000	51282000	5248	4545	4952	32465;32466;32467;32468;32469;32470;32471;32472;32473	44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482	44474			13	
ATEPAADTGAQPK	1	Unmodified	1255.6044	0.60444487	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	10.87	10.487	2	2.5385E-09	8339	160511_QHF_FH_JSI12i_1	105.83	75.664			0.97483	0.9476	5.0774	4	0	Median	1.1028	0.93075	NaN	1	0	Median	0.80615	0.96476	NaN	1	0	Median	1.0593	1.0279	NaN	1	0	Median	0.89712	0.91715	NaN	1	0	Median	275870000	146750000	129120000	64605000	32063000	32542000	77580000	44606000	32974000	76488000	46748000	29740000	57199000	23336000	33863000	5249	5466	4953	32474;32475;32476;32477;32478	44483;44484;44485;44486;44487;44488	44485			6	
ATEPHMLETYTPEVTK	1	Unmodified	1845.8819	0.88186528	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		5								1	1	2	1	52.152	51.176	2;3	5.0179E-11	44196	160511_QHF_FH_JSI11i_2	103.75	90.089			1.474	1.3824	15.546	4	0	Median	1.4761	1.2369	NaN	1	0	Median	1.0027	1.2203	NaN	1	0	Median	1.5225	1.5449	NaN	1	0	Median	1.4718	1.6579	NaN	1	0	Median	453370000	187690000	265680000	74512000	28863000	45650000	84825000	47611000	37213000	179180000	70197000	108980000	114850000	41015000	73836000	5250	5327	4954	32479;32480;32481;32482;32483	44489;44490;44491;44492;44493	44493			5	
ATEPPSPDAGELSLASR	0	Unmodified	1696.8268	0.82679325	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			52.304	51.499	2;3	0.0073258	46499	160511_QHF_FH_JSI10i_1	55.291	39.038			0.43077	0.42683	3.9696	2	2	Median	0.50822	0.41502	NaN	1	1	Median	0.36513	0.43898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103610000	66509000	37101000	21805000	13039000	8765800	81805000	53470000	28335000	0	0	0	0	0	0	5251	3466	4955	32484;32485	44494;44495	44494			2	
ATEPQMVLFNLYDDWLK	1	Unmodified	2082.0132	0.013213808	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		102.57	102.49	2;3	1.0595E-15	90299	160511_QHF_FH_JSI11i_2	163.27	148.24			0.64159	0.71423	42.283	2	1	Median	NaN	NaN	NaN	0	0	Median	0.4345	0.52965	NaN	1	1	Median	0.94739	0.96313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	140940000	79390000	61550000	0	0	0	51289000	34010000	17279000	89651000	45380000	44271000	0	0	0	5252	3101	4956	32486;32487	44496;44497	44496			2	
ATEPVATSNPAGDPVGSTR	0	Unmodified	1825.8806	0.88061973	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.859	33.254	2	3.3536E-13	29703	160511_QHF_FH_JSI10i_1	176.32	160.78			1.0336	1.0823	9.0563	4	0	Median	1.4587	1.1666	NaN	1	0	Median	0.87589	1.0414	NaN	1	0	Median	0.99795	0.95086	NaN	1	0	Median	1.0704	1.1247	NaN	1	0	Median	170920000	73358000	97561000	40245000	13541000	26704000	53610000	24422000	29187000	46892000	22477000	24415000	30172000	12918000	17254000	5253	2787	4957	32488;32489;32490;32491	44498;44499;44500;44501;44502;44503	44501			6	
ATEPVIAFYEK	1	Unmodified	1266.6496	0.64960415	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	6.12	6	5	1				3	3		4	5	4	5	64.692	60.8	2	1.2354E-13	54772	160511_QHF_FH_JSI10i_1	135.86	112.51			1.0301	1.0759	11.247	16	6	Median	1.2534	1.0383	4.3771	4	0	Median	0.89929	1.0784	7.2049	3	1	Median	1.12	1.1135	13.46	4	2	Median	0.99812	1.0759	16.515	5	3	Median	2311400000	1014100000	1297300000	373920000	148860000	225060000	431210000	196990000	234220000	739630000	320460000	419170000	766610000	347750000	418860000	5254	776	4958	32492;32493;32494;32495;32496;32497;32498;32499;32500;32501;32502;32503;32504;32505;32506;32507;32508;32509	44504;44505;44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526	44514			23	
ATEPVIAFYEKR	1	Acetyl (K)	1464.7613	0.76127986	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								5			2	2	1	76.167	65.592	2;3	0.0043509	34938	160513_QHF_FH_JSI11Kac_5	85.355	62.713			0.42768	0.42162	45.226	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38621	0.37542	16.413	2	0	Median	0.7348	0.80044	NaN	1	0	Median	13852000	9076400	4775100	0	0	0	1170900	0	1170900	10934000	7920100	3013900	1746600	1156300	590340	5255	776	4959	32510;32511;32512;32513;32514	44527;44528;44529;44530;44531;44532	44527	401		6	
ATEQYYAMK	1	Unmodified	1103.4957	0.49574604	1215	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	24.115	23.777	2	0.030587	21085	160511_QHF_FH_JSI12i_1	48.091	37.381			1.4115	1.421	50.853	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0152	0.99184	NaN	1	0	Median	1.9625	2.036	NaN	1	1	Median	103140000	43244000	59891000	0	0	0	0	0	0	54932000	22671000	32261000	48204000	20574000	27630000	5256	1215	4960	32515;32516	44533;44534	44534			1	
ATESGAQSAPLPMEGVDISPK	1	Oxidation (M)	2100.0045	0.0044996155	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	5.71	5				3	2				1	4	3	2	58.597	53.553	2;3	3.4031E-23	47904	160511_QHF_FH_JSI10i_1	180.62	164.87			1.075	1.1153	27.695	10	2	Median	1.1675	0.94161	NaN	1	0	Median	0.9748	1.1165	9.2326	4	2	Median	1.6423	1.5636	51.508	3	0	Plateau	1.2273	1.2794	18.85	2	0	Median	230730000	105400000	125330000	60741000	28386000	32356000	73924000	38203000	35721000	56061000	23739000	32323000	40008000	15074000	24934000	5257	2193	4961	32517;32518;32519;32520;32521;32522;32523;32524;32525;32526	44535;44536;44537;44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548	44542		1832	14	
ATESGAQSAPLPMEGVDISPK	1	Unmodified	2084.0096	0.0095849934	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.35	8		1		1	3				3	3	3	4	69.679	66.596	2;3	2.8254E-268	60658	160511_QHF_FH_JSI11i_1	363.2	350			1.0636	0.96699	23.77	13	2	Median	1.1346	0.89471	30.487	3	1	Median	0.76064	0.87846	13.648	3	0	Median	1.1558	1.1332	5.4608	3	0	Plateau	1.0605	1.1141	19.643	4	1	Median	7262800000	3659400000	3603400000	1969800000	960340000	1009500000	1820000000	985780000	834170000	2022800000	1004400000	1018400000	1450200000	708910000	741280000	5258	2193	4961	32527;32528;32529;32530;32531;32532;32533;32534;32535;32536;32537;32538;32539	44549;44550;44551;44552;44553;44554;44555;44556;44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579	44552			30	
ATESGAQSAPLPMEGVDISPKQDEGVLK	2	Unmodified	2853.4066	0.40660327	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			71.843	71.631	3	1.3097E-12	64841	160511_QHF_FH_JSI10i_1	81.297	78.098			0.82293	0.91155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82293	0.91155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12727000	10185000	2542100	0	0	0	12727000	10185000	2542100	0	0	0	0	0	0	5259	2193	4962	32540	44580;44581	44580			2	
ATETVELHK	1	Acetyl (Protein N-term)	1068.5451	0.54513908	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				2	3	2	2	30.877	25.047	2	4.133E-17	25624	160511_QHF_FH_JSI12i_1	93.374	24.459			1.0995	1.1323	18.045	8	0	Median	1.3577	1.0925	22.546	2	0	Median	0.88297	1.044	15.119	2	0	Median	1.1309	1.107	13.813	2	0	Median	1.2361	1.3273	26.096	2	0	Median	3061000000	1389100000	1671900000	612460000	223900000	388560000	839610000	460660000	378950000	801900000	381980000	419930000	806990000	322520000	484460000	5260	2117	4963	32541;32542;32543;32544;32545;32546;32547;32548;32549	44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595	44585			13	
ATETVELHKLK	2	Acetyl (K);Acetyl (Protein N-term)	1351.7347	0.73473076	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.452						5	2				3	2	2	62.839	52.98	2	1.6539E-10	27328	160513_QHF_FH_JSI10Kac_3	53.327	37.698			0.90704	1.024	21.619	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0652	1.2523	16.911	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83373	0.90215	6.3807	2	0	Median	18447000	9153500	9293200	0	0	0	9356300	4187400	5168900	0	0	0	9090500	4966100	4124400	5261	2117	4964	32550;32551;32552;32553;32554;32555;32556	44596;44597;44598;44599;44600;44601;44602;44603	44602	2217		8	
ATEYHLGLLK	1	Unmodified	1143.6288	0.62880913	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	46.398	45.705	3	0.00051686	39850	160511_QHF_FH_JSI11i_3	61.353	52.031			1.0815	1.0221	16.201	6	1	Median	1.2586	1.062	NaN	1	0	Median	0.80133	0.97617	NaN	1	0	Median	1.1816	1.1423	24.477	2	0	Median	1.1513	1.1503	22.133	2	1	Median	366350000	184690000	181660000	40713000	19366000	21347000	72785000	37190000	35595000	138610000	70836000	67773000	114240000	57298000	56942000	5262	1843	4965	32557;32558;32559;32560;32561;32562	44604;44605;44606;44607;44608;44609;44610;44611;44612;44613;44614	44604			11	
ATFAFGAQTSTTADQGAAK	1	Unmodified	1842.8748	0.87480607	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	47.572	46.889	2;3	2.7921E-25	42638	160511_QHF_FH_JSI12i_1	182.57	159.34			0.75065	0.81573	24.385	7	2	Median	0.80225	0.6525	44.266	2	1	Median	0.63396	0.74104	13.582	2	0	Median	0.98765	0.94548	0.10606	2	1	Median	0.75065	0.78496	NaN	1	0	Median	274460000	162080000	112380000	66507000	39165000	27343000	87573000	58279000	29294000	82312000	43586000	38726000	38066000	21048000	17018000	5263	1684	4966	32563;32564;32565;32566;32567;32568;32569;32570	44615;44616;44617;44618;44619;44620;44621;44622;44623;44624	44618			10	
ATFDAISK	1	Unmodified	851.43888	0.43888309	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.3	8		1			4	2	2		4	3	4	6	31.49	26.639	1;2	0.001145	25082	160511_QHF_FH_JSI11i_1	93.429	59.69			1.1728	1.1907	40.073	16	3	Median	1.3357	1.1148	40.905	4	1	Median	0.85438	1.0154	19.662	3	0	Plateau	1.3026	1.2755	5.4421	4	0	Median	0.69973	0.77424	42.523	5	2	Median	12861000000	5334000000	7527500000	2429900000	955880000	1474000000	3642500000	1454000000	2188400000	3979900000	1400700000	2579200000	2809200000	1523400000	1285800000	5264	1084	4967	32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584;32585;32586;32587	44625;44626;44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643	44626			18	
ATFDISLVVPK	1	Unmodified	1188.6754	0.67542497	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.942	85.486	2	2.4536E-07	77480	160511_QHF_FH_JSI10i_1	121.5	113.28			0.95021	0.98162	16.239	4	0	Median	0.87272	0.7454	NaN	1	0	Median	0.80344	0.96038	NaN	1	0	Median	1.0346	1.0033	NaN	1	0	Median	1.061	1.085	NaN	1	0	Median	104950000	51523000	53424000	6323800	3670200	2653600	54032000	25796000	28237000	18364000	9016400	9347100	26228000	13041000	13186000	5265	1862	4968	32588;32589;32590;32591	44644;44645;44646;44647;44648	44648			5	
ATFDNVTSYLK	1	Unmodified	1257.6241	0.62411768	1889	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.4	0.49	3	2								2	1	2		66.181	65.53	2	5.6617E-05	57057	160511_QHF_FH_JSI11i_2	102.53	74.322			0.18928	0.16621	104.63	5	5	Median	0.49941	0.41155	140.2	2	2	Median	0.14154	0.16621	NaN	1	1	Median	0.3979	0.39598	133.51	2	2	Median	NaN	NaN	NaN	0	0	Median	1218500000	979180000	239340000	314850000	244310000	70535000	354820000	312130000	42685000	548860000	422730000	126120000	0	0	0	5266	1889	4969	32592;32593;32594;32595;32596	44649;44650;44651;44652;44653	44653			5	
ATFFAVTYQIPNTQK	1	Unmodified	1727.8883	0.88827129	4539	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			80.398	73.261	2;3	5.2516E-63	39144	160513_QHF_FH_JSI9Kac_6	214.81	191.06			1.1246	1.1189	55.411	2	0	Median	1.931	1.6556	NaN	1	0	Median	0.65501	0.75617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75817000	32961000	42856000	22556000	7401300	15155000	53261000	25560000	27701000	0	0	0	0	0	0	5267	4539	4970	32597;32598	44654;44655;44656	44654			3	
ATFGDNK	1	Unmodified	751.35007	0.35006808	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.2048	7.8446	2	0.039594	5804	160511_QHF_FH_JSI12i_1	49.59	26.968			3.6721	3.8683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6721	3.8683	NaN	1	1	Median	224980000	56522000	168460000	0	0	0	0	0	0	0	0	0	224980000	56522000	168460000	5268	2835	4971	32599	44657	44657			1	
ATFGPAIAAVQK	1	Unmodified	1172.6554	0.65535823	36	A8MPP1	DDX11L8	Putative ATP-dependent RNA helicase DDX11-like protein 8	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	53.028	51.87	2	0.0011315	44349	160511_QHF_FH_JSI12i_3	67.414	48.634			0.72153	0.87295	10.425	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63249	0.81092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8231	0.93973	NaN	1	0	Median	23244000	14940000	8303300	0	0	0	13135000	7911500	5223500	0	0	0	10109000	7028700	3079900	5269	36	4972	32600;32601;32602;32603	44658;44659;44660;44661	44661			4	
ATFHTPFSHLGQSPEGCSSYTFPK	1	Unmodified	2682.2173	0.21728636	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	67.648	66.757	3;4	6.4982E-11	57004	160511_QHF_FH_JSI12i_3	90.534	77.732			0.85118	0.97255	15.655	7	0	Median	1.1504	0.94899	17.49	2	0	Median	0.83577	0.97346	0.13248	2	0	Median	0.82051	0.76574	5.3306	2	0	Median	1.0018	1.1178	NaN	1	0	Median	924990000	486840000	438140000	136390000	60232000	76161000	245810000	139560000	106250000	469100000	247530000	221570000	73689000	39522000	34167000	5270	538	4973	32604;32605;32606;32607;32608;32609;32610	44662;44663;44664;44665;44666;44667;44668;44669;44670;44671;44672	44672			11	
ATFIKVPQNQNGK	2	Acetyl (K)	1485.794	0.79397698	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						3	6				3	3	3	55.315	45.055	2;3	8.6746E-08	25769	160513_QHF_FH_JSI11Kac_4	111.06	104.82			0.51215	0.54787	140.66	9	1	Median	NaN	NaN	NaN	0	0	Median	1.0087	1.2382	2.1798	3	0	Plateau	0.32354	0.31608	7.8579	3	0	Median	0.51215	0.54787	229.16	3	1	Median	97096000	66261000	30835000	0	0	0	17121000	9251500	7869600	69083000	50670000	18413000	10892000	6339600	4552700	5271	1154	4974	32611;32612;32613;32614;32615;32616;32617;32618;32619	44673;44674;44675;44676;44677;44678;44679;44680;44681;44682;44683;44684;44685;44686	44679	1011		14	
ATFLVISHYQCK	1	Unmodified	1465.7388	0.73877028	3228	Q7L523;Q5VZM2	RRAGA;RRAGB	Ras-related GTP-binding protein A;Ras-related GTP-binding protein B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			3						9	4	3	3	2	57.816	50.979	2;3	2.6804E-39	27958	160513_QHF_FH_JSI10Kac_6	199.4	180.08			1.0248	1.0658	36.954	10	1	Median	1.9279	1.6211	57.413	2	1	Median	1.081	1.2379	18.911	3	0	Median	0.88686	0.7715	8.6888	3	0	Plateau	0.99579	1.0514	0.016724	2	0	Median	998060000	462270000	535790000	53180000	20612000	32568000	480430000	198580000	281850000	320550000	167700000	152850000	143900000	75368000	68530000	5272	3228	4975	32620;32621;32622;32623;32624;32625;32626;32627;32628;32629;32630;32631	44687;44688;44689;44690;44691;44692;44693;44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704;44705	44703			19	
ATFMEVLTK	1	Unmodified	1038.542	0.54196796	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.811	65.517	2	0.045356	56691	160511_QHF_FH_JSI12i_3	45.161	27.775			1.4698	1.5278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4698	1.5278	NaN	1	1	Median	14479000	5615300	8863300	0	0	0	0	0	0	0	0	0	14479000	5615300	8863300	5273	1193	4976	32632	44706	44706			1	
ATFNPAQDK	1	Unmodified	990.47706	0.47705951	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.16	5	2				3	4			1	5	3	5	23.004	18.061	2	1.5999E-05	15861	160511_QHF_FH_JSI12i_1	108.81	90.429			0.83682	0.8752	37.811	10	1	Median	1.3715	1.1314	NaN	1	0	Median	0.5563	0.65057	52.615	3	0	Median	0.99121	0.96328	18.202	3	0	Median	1.183	1.2532	42.204	3	1	Plateau	1421200000	622600000	798600000	319260000	119610000	199650000	400190000	208610000	191570000	395900000	167800000	228100000	305850000	126580000	179270000	5274	155	4977	32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645;32646	44707;44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725	44710			19	
ATFSEFAAK	1	Unmodified	970.476	0.47599688	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.25	5.63		3						1			1	2	1	41.815	38.484	2	0.00052543	32916	160511_QHF_FH_JSI12i_2	79.059	61.819			1.1032	1.146	12.435	4	1	Median	NaN	NaN	NaN	0	0	Median	0.93324	1.1606	NaN	1	0	Median	1.1032	1.1095	2.7776	2	1	Median	1.2717	1.436	NaN	1	0	Median	748060000	330080000	417990000	0	0	0	175960000	91722000	84240000	312640000	136180000	176460000	259470000	102170000	157290000	5275	203	4978	32647;32648;32649;32650	44726;44727	44726			2	
ATFSEFAAKHAK	2	Acetyl (K)	1348.6776	0.67755023	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		49.04	39.338	2	0.0012284	21411	160513_QHF_FH_JSI11Kac_6	83	65.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1925000	1925000	0	0	0	0	0	0	0	1925000	1925000	0	0	0	0	5276	203	4979	32651	44728	44728	109		1	
ATFYGEQVDYYK	1	Unmodified	1482.6667	0.66671078	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.22	4	4	3				2	3	1	3	7	3	4	57.537	53.123	2	8.7439E-16	45540	160511_QHF_FH_JSI12i_2	157.78	150.92			0.99115	0.96539	41.992	14	1	Plateau	1.1435	0.95708	7.8213	2	0	Median	0.83521	1.0272	48.885	5	1	Median	0.98264	0.94995	29.086	3	0	Plateau	1.0488	0.70618	56.152	4	0	Linear	3889400000	1974400000	1914900000	774230000	342600000	431630000	1083200000	618700000	464500000	1045600000	531360000	514280000	986290000	481760000	504520000	5277	1600	4980	32652;32653;32654;32655;32656;32657;32658;32659;32660;32661;32662;32663;32664;32665;32666;32667;32668	44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750;44751;44752;44753;44754	44732			26	
ATFYLLIGNANAAKPDLDK	2	Unmodified	2034.0786	0.078591257	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	3	4	3	1	81.242	76.511	2;3	3.3718E-16	39748	160513_QHF_FH_JSI11Kac_6	136.04	113.99			0.85881	0.92744	92.09	9	6	Median	0.85881	0.73799	138.77	3	2	Median	0.83499	0.92744	9.5832	3	2	Plateau	2.5938	2.4189	120.28	2	1	Median	0.66349	0.7035	NaN	1	1	Median	3900400000	1970400000	1930100000	730530000	387040000	343490000	2477800000	1265000000	1212800000	372900000	119700000	253190000	319200000	198590000	120610000	5278	611	4981	32669;32670;32671;32672;32673;32674;32675;32676;32677;32678;32679	44755;44756;44757;44758;44759;44760;44761;44762;44763;44764	44758			9	
ATFYLNVLEQK	1	Unmodified	1324.7027	0.70270235	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	3	1	3	3	78.288	75.047	2	5.5376E-13	67310	160511_QHF_FH_JSI11i_2	145.99	119.88			0.89436	1.0089	32.221	10	3	Median	1.3485	1.1301	58.898	3	2	Median	0.85714	1.0497	NaN	1	0	Median	0.83889	0.85232	25.561	3	1	Median	0.9332	1.007	6.9755	3	0	Median	454690000	208240000	246460000	127500000	46661000	80839000	66034000	32469000	33565000	143520000	68787000	74736000	117640000	60319000	57316000	5279	5708	4982	32680;32681;32682;32683;32684;32685;32686;32687;32688;32689	44765;44766;44767;44768;44769;44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780	44773			15	
ATGAAAAEAK	1	Unmodified	859.43995	0.43994572	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				1	4	2	3	5.8937	1.4158	2	1.2189E-08	2110	160513_QHF_FH_JSI12Kac_3	142.43	103.64			0.89609	0.95937	9.0805	10	2	Median	1.2504	0.99898	NaN	1	0	Median	0.84103	0.97781	12.905	4	1	Median	0.91597	0.8949	2.8225	2	0	Median	0.88453	0.9652	3.0823	3	1	Plateau	3921900000	1962900000	1959000000	951820000	435070000	516750000	946380000	517410000	428980000	987570000	492730000	494840000	1036100000	517710000	518390000	5280	3634	4983	32690;32691;32692;32693;32694;32695;32696;32697;32698;32699	44781;44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793	44791			13	
ATGAATPK	1	Unmodified	715.38645	0.38645359	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	6	4	4	2		4	3	2		3	7	5	4	6	5.1417	-0.051506	2	0.00071366	2039	160513_QHF_FH_JSI9Kac_3	95.531	56.739			0.95607	1.0006	40.366	22	1	Median	1.2096	0.98593	60.516	7	1	Median	0.85668	1.0218	33.273	5	0	Median	1.1725	1.1504	13.542	4	0	Median	0.88025	0.9391	12.119	6	0	Median	38132000000	17730000000	20402000000	7001400000	3076200000	3925300000	9630400000	5268200000	4362200000	10435000000	4221800000	6213500000	11065000000	5163900000	5901400000	5281	969	4984	32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716;32717;32718;32719;32720;32721	44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804;44805;44806;44807;44808;44809;44810;44811;44812;44813;44814;44815;44816;44817;44818	44805			25	
ATGAATPKK	2	Unmodified	843.48142	0.48141661	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	4.67	4.64		2	3					1		2	1		3	4.1077	2.1079	2;3	0.00068746	1392	160511_QHF_FH_JSI12i_3	76.221	49.259			0.91285	1.1095	53.806	5	2	Median	1.0557	0.88185	42.78	2	1	Median	0.91285	1.1355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60644	0.61521	83.399	2	1	Median	403330000	223990000	179340000	94209000	36278000	57931000	67636000	39819000	27817000	0	0	0	241480000	147890000	93589000	5282	969	4985	32722;32723;32724;32725;32726;32727	44819;44820;44821;44822;44823;44824;44825	44822			6	
ATGADVR	0	Unmodified	688.3504	0.35040244	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	1.1588	0.82217	2	0.046013	849	160511_QHF_FH_JSI12i_1	44.407	7.4187			0.86686	0.92605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86686	0.92605	NaN	1	0	Median	354180000	172400000	181790000	0	0	0	0	0	0	0	0	0	354180000	172400000	181790000	5283	4900	4986	32728	44826	44826			1	
ATGAGGAEYFRR	0	Unmodified	1254.6105	0.6105333	5791				yes	yes	0	0	0	1		By MS/MS			16	0									1		1			26.77	18.867	3	0.050366	11152	160513_QHF_FH_JSI10Kac_6	21.301	6.6212	+		0.5011	0.59514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5011	0.59514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10501000	7071000	3430400	0	0	0	10501000	7071000	3430400	0	0	0	0	0	0	5284	5791	4987	32729	44827	44827			1	
ATGANATPLDFPSK	1	Acetyl (Protein N-term)	1430.7042	0.70415892	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	1	0	0		By MS/MS	By MS/MS		11	0				4							2	2		73.624	64.569	2	0.00085706	25594	160513_QHF_FH_JSI10Kac_1	80.763	69.273			0.15835	0.17671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15835	0.17671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1920400	1060700	859710	0	0	0	1386100	1060700	325490	534220	0	534220	0	0	0	5285	2689	4988	32730;32731;32732;32733	44828;44829;44830;44831	44830			4	
ATGANATPLDFPSKK	2	Acetyl (Protein N-term)	1558.7991	0.79912193	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	53.342	52.674	2	0.00013872	46735	160511_QHF_FH_JSI9i_1	51.841	40.621			0.94098	0.76935	238.5	5	4	Median	0.94098	0.76935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1749	1.1333	202.56	2	2	Median	1.288	1.3216	429.58	2	2	Median	164560000	82517000	82042000	47777000	22061000	25716000	0	0	0	58642000	30229000	28414000	58140000	30228000	27912000	5286	2689	4989	32734;32735;32736;32737;32738	44832;44833;44834;44835;44836	44836			5	
ATGATQQDANASSLLDIYSFWLK	1	Unmodified	2499.2282	0.22816862	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	9	7		3							3		1	2	3	100.02	95.25	3	1.9603E-12	50414	160513_QHF_FH_JSI11Kac_6	103.84	93.582			1.0687	1.0834	21.246	5	2	Median	NaN	NaN	NaN	0	0	Median	0.71365	0.85945	NaN	1	0	Median	1.0687	1.0834	NaN	1	0	Median	1.1792	1.2302	21.954	3	2	Median	670940000	319010000	351930000	0	0	0	42959000	27448000	15511000	223430000	91938000	131490000	404560000	199630000	204930000	5287	2586	4990	32739;32740;32741;32742;32743;32744	44837;44838;44839;44840;44841	44839			5	
ATGDETGAKVER	1	Acetyl (K)	1274.6103	0.61025853	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	18.712	11.435	2	0.0031474	7749	160513_QHF_FH_JSI10Kac_3	70.977	51.19			0.47989	0.51508	62.096	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0949	1.2862	NaN	1	0	Median	0.39128	0.39336	NaN	1	0	Median	0.47989	0.51508	NaN	1	0	Median	14863000	8888300	5974900	0	0	0	4803000	2206700	2596300	5542500	3774800	1767700	4517600	2906800	1610800	5288	1948	4991	32745;32746;32747	44842;44843;44844	44844	1953		3	
ATGEADVEFVTHEDAVAAMSK	1	Unmodified	2176.9947	0.99466321	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	64.882	63.979	3	9.4077E-05	56230	160511_QHF_FH_JSI9i_2	60.939	34.1			1.0135	1.0066	12.555	4	0	Median	1.1711	0.98799	NaN	1	0	Median	0.83293	1.0255	NaN	1	0	Median	1.2594	1.2726	NaN	1	0	Median	0.87715	0.97015	NaN	1	0	Median	290010000	146940000	143070000	53470000	21995000	31475000	46211000	25888000	20323000	89124000	38378000	50747000	101210000	60682000	40524000	5289	1382	4992	32748;32749;32750;32751	44845	44845			0	
ATGEEEGMDIQK	1	Unmodified	1306.5711	0.57109583	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	23.161	22.3	2	9.9952E-10	19336	160511_QHF_FH_JSI11i_1	120.06	107.02			1.2457	1.1692	23.836	2	1	Median	1.6802	1.3838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92352	0.98785	NaN	1	0	Median	86875000	41713000	45162000	43679000	19241000	24437000	0	0	0	0	0	0	43197000	22472000	20725000	5290	4085	4993	32752;32753;32754;32755	44846;44847;44848;44849	44846			4	
ATGFDGGNK	1	Unmodified	865.393	0.39299553	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			8.3783	8.1423	2	0.00042043	5976	160511_QHF_FH_JSI10i_1	85.161	49.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5291	3675	4994	32756	44850	44850			1	
ATGHPFVQYQWFK	1	Unmodified	1607.7885	0.78849767	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	5	2	1	4	66.995	63.176	3	1.6709E-05	51894	160511_QHF_FH_JSI9i_3	75.739	71.109			1.2479	1.0233	38.799	11	6	Median	1.1261	0.9252	14.494	4	2	Median	1.2035	1.4271	54.137	2	1	Median	1.5017	1.4528	NaN	1	0	Median	1.085	1.1368	52.012	4	3	Median	537490000	268080000	269410000	209050000	103470000	105580000	87946000	49627000	38319000	22068000	8009500	14058000	218420000	106980000	111450000	5292	5270	4995	32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768	44851;44852;44853;44854;44855;44856;44857;44858;44859;44860;44861;44862;44863;44864;44865;44866	44859			16	
ATGHSGGGCISQGR	0	Unmodified	1343.6	0.60004497	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			5.2781	4.8011	3	3.9862E-05	2859	160511_QHF_FH_JSI10i_3	94.532	84.48			0.67777	0.78867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67777	0.78867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76027000	39647000	36380000	0	0	0	76027000	39647000	36380000	0	0	0	0	0	0	5293	4817	4996	32769	44867	44867			1	
ATGILLYGLASR	0	Unmodified	1233.7081	0.70812208	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	5.93		1	2					3	4	3	4	2	1	77.867	71.016	2	9.2872E-62	38889	160513_QHF_FH_JSI10Kac_6	221.5	158.08			0.86731	1.0135	24.174	10	0	Median	1.3446	1.1584	1.6806	3	0	Plateau	0.83305	0.95426	31.164	4	0	Median	0.91507	0.8743	25.337	2	0	Median	0.8724	0.91092	NaN	1	0	Median	2436200000	1191400000	1244800000	530090000	185790000	344310000	1318100000	703900000	614210000	464970000	233160000	231820000	123040000	68542000	54502000	5294	1609	4997	32770;32771;32772;32773;32774;32775;32776;32777;32778;32779	44868;44869;44870;44871;44872;44873;44874;44875;44876;44877;44878;44879;44880;44881;44882;44883;44884	44884			17	
ATGISFAIHGNFSGTK	1	Unmodified	1606.8104	0.81035532	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	4	4	4	3	60.691	56.015	2;3	2.3773E-23	29761	160513_QHF_FH_JSI9Kac_6	169.62	144.18			1.0076	1.0279	14.929	15	0	Median	1.0931	0.92336	14.452	4	0	Median	0.87277	1.029	11.769	4	0	Median	1.2616	1.1724	7.7442	4	0	Median	1.0068	1.0279	9.9265	3	0	Plateau	2047600000	1050300000	997300000	584800000	300240000	284570000	576810000	316230000	260580000	508220000	227910000	280310000	377800000	205950000	171840000	5295	2665	4998	32780;32781;32782;32783;32784;32785;32786;32787;32788;32789;32790;32791;32792;32793;32794	44885;44886;44887;44888;44889;44890;44891;44892;44893;44894;44895;44896;44897;44898;44899;44900;44901;44902;44903;44904;44905;44906;44907;44908;44909;44910;44911;44912;44913;44914;44915;44916;44917	44906			33	
ATGKLIAQGR	1	Acetyl (K)	1055.6087	0.60874239	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	14.5	0.5							3	3		1	2	1	2	32.244	22.963	2	0.0018706	12760	160513_QHF_FH_JSI12Kac_5	82.749	59.321			0.87719	0.9762	11.62	6	0	Median	1.0513	0.88436	NaN	1	0	Median	0.84142	1.0125	4.7836	2	0	Median	0.78921	0.7836	NaN	1	0	Median	0.91989	1.021	6.7239	2	0	Median	42811000	22820000	19991000	6355100	3083600	3271500	16101000	8675000	7426300	4758900	2534800	2224000	15596000	8526500	7069600	5296	4905	4999	32795;32796;32797;32798;32799;32800	44918;44919;44920;44921;44922;44923	44922	3262		6	
ATGKPHTLWVAFAK	2	Unmodified	1525.8405	0.84053324	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				58.917	49.793	3	0.0024482	26471	160513_QHF_FH_JSI9Kac_6	58.268	45.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5297	4863	5000	32801	44924	44924			1	
ATGLGPVDRVETTR	0	Unmodified	1470.7791	0.77905519	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			34.878	33.663	3	0.0064037	28002	160511_QHF_FH_JSI10i_3	43.184	34.774			1.3079	1.2887	19.54	4	1	Median	1.7806	1.4755	20.297	2	1	Median	0.9909	1.1732	14.426	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243500000	102320000	141180000	92321000	33735000	58587000	151180000	68584000	82592000	0	0	0	0	0	0	5298	241	5001	32802;32803;32804;32805	44925;44926;44927;44928;44929;44930	44925			6	
ATGLHFR	0	Unmodified	800.42932	0.42932146	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			17.148	16.086	2	0.013926	13014	160511_QHF_FH_JSI10i_3	67.035	33.296			1.1515	1.094	0.37224	2	0	Median	1.3796	1.0911	NaN	1	0	Median	0.96104	1.0969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	267470000	127270000	140200000	167560000	79298000	88265000	99904000	47973000	51931000	0	0	0	0	0	0	5299	1600	5002	32806;32807	44931;44932	44931			2	
ATGLPSSLASIPGGK	1	Unmodified	1354.7456	0.7456298	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	0	By matching		By MS/MS		1.5	0.5	1	1								1		1		62.151	61.354	2	0.050964	53336	160511_QHF_FH_JSI11i_2	44.612	38.831			0.71125	0.66086	7.7078	2	0	Median	0.7576	0.62581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66774	0.69788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75645000	36671000	38974000	53878000	26430000	27448000	0	0	0	21768000	10241000	11527000	0	0	0	5300	2220	5003	32808;32809	44933	44933			1	
ATGPPVSELITK	1	Unmodified	1211.6762	0.67615325	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.75	4	4	1			2	3			2	4	5	3	58.713	54.569	2	1.6002E-06	49476	160511_QHF_FH_JSI12i_1	126.19	85.47			1.0282	1.0134	11.826	14	2	Median	1.2285	1.0222	9.4136	2	0	Median	0.86081	1.0288	16.623	4	0	Median	1.0418	1.0017	3.3849	5	1	Median	0.82219	0.88287	19.027	3	1	Plateau	7582000000	3755300000	3826700000	1637500000	712650000	924800000	1757800000	962410000	795380000	2202500000	1005700000	1196800000	1984300000	1074500000	909720000	5301	1097	5004	32810;32811;32812;32813;32814;32815;32816;32817;32818;32819;32820;32821;32822;32823	44934;44935;44936;44937;44938;44939;44940;44941;44942;44943;44944;44945;44946;44947;44948;44949;44950;44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961;44962;44963;44964;44965	44942			32	
ATGQKLMR	1	Acetyl (K);Acetyl (Protein N-term)	987.51715	0.51715019	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			45.598	36.424	2	0.032185	15103	160513_QHF_FH_JSI10Kac_1	38.792	6.3212			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5302	2266	5005	32824	44966	44966			1	
ATGSEVSQR	0	Unmodified	933.45157	0.45157304	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5	5.66	4					2				1	2	2	1	5.1784	2.5273	2	0.0024414	1820	160513_QHF_FH_JSI11Kac_3	78.334	38.672			1.0804	1.0447	15.684	6	0	Median	1.1892	0.98713	NaN	1	0	Median	0.81861	0.97275	11.14	2	0	Median	1.3044	1.2835	13.915	2	0	Median	0.99004	1.0369	NaN	1	0	Median	822950000	432590000	390360000	161580000	84810000	76771000	228730000	127150000	101590000	234320000	108640000	125680000	198310000	111990000	86321000	5303	1085	5006	32825;32826;32827;32828;32829;32830	44967;44968	44967			2	
ATGSEVSQRK	1	Unmodified	1061.5465	0.54653606	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.27	1	2	1					7		2	5	2	2	4.8822	-0.94704	3	2.6719E-05	2326	160511_QHF_FH_JSI10i_2	84.658	63.788			1.0708	1.2262	18.295	10	0	Median	1.507	1.296	NaN	1	0	Median	1.0763	1.2758	19.028	5	0	Median	1.0645	1.046	0.56462	2	0	Median	1.0485	1.1445	8.5197	2	0	Median	812440000	376000000	436430000	261690000	112350000	149350000	505900000	241910000	263990000	27611000	13343000	14268000	17230000	8399800	8830700	5304	1085	5007	32831;32832;32833;32834;32835;32836;32837;32838;32839;32840;32841	44969;44970;44971;44972;44973;44974;44975;44976;44977	44976			9	
ATGSPVSIFVYDVKPGAEEQTQVAK	2	Unmodified	2620.3384	0.33844735	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		1	1	3	4	77.439	75.802	3;4	2.0879E-21	67428	160511_QHF_FH_JSI9i_2	135.1	122.29			0.9299	0.89781	26.538	9	3	Median	1.2565	1.0545	NaN	1	0	Median	0.9299	1.1169	NaN	1	0	Median	0.95324	0.96385	5.6262	3	0	Plateau	0.78149	0.82552	32.039	4	3	Median	913500000	486420000	427080000	61920000	26330000	35589000	74342000	37256000	37086000	241460000	135710000	105760000	535770000	287130000	248650000	5305	4157	5008	32842;32843;32844;32845;32846;32847;32848;32849;32850	44978;44979;44980;44981;44982;44983;44984;44985;44986;44987;44988;44989;44990;44991;44992;44993;44994;44995;44996;44997;44998	44986			21	
ATGSYIAGTNGNSNGLVPMLR	0	Unmodified	2092.0371	0.037137148	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							3	4	3	3	73.732	72.964	2;3	3.3306E-57	64400	160511_QHF_FH_JSI9i_2	281.51	241.13			0.89789	0.97359	24.478	12	5	Median	1.1863	1.024	12.334	2	0	Median	0.86343	1.0327	17.409	4	2	Median	0.9285	0.8361	10.417	3	1	Plateau	0.9895	1.121	45.853	3	2	Median	366530000	198980000	167560000	83731000	38301000	45429000	120990000	68795000	52190000	99999000	56790000	43209000	61819000	35090000	26729000	5306	1242	5009	32851;32852;32853;32854;32855;32856;32857;32858;32859;32860;32861;32862;32863	44999;45000;45001;45002;45003;45004;45005;45006;45007;45008;45009;45010;45011;45012;45013;45014;45015;45016;45017;45018;45019;45020;45021;45022;45023	45012			25	
ATGTGKHK	2	Acetyl (K);Acetyl (Protein N-term)	882.45593	0.45593014	4631	Q9H0E9	BRD8	Bromodomain-containing protein 8	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	1.56				2	3	5	3	4	3	3	7	4	6	6.9007	-1.4712	2	9.3147E-17	2216	160513_QHF_FH_JSI12Kac_3	75.109	59.67			0.89469	0.96722	13.422	18	0	Median	1.1794	1.0854	20.248	2	0	Median	0.75978	0.86881	11.366	7	0	Median	1.0491	1.0353	3.0515	3	0	Median	0.91797	0.98863	12.114	6	0	Median	7279000000	3541800000	3737200000	3610800000	1606900000	2003900000	1243100000	669900000	573190000	742340000	375910000	366430000	1682800000	889080000	793690000	5307	4631	5010	32864;32865;32866;32867;32868;32869;32870;32871;32872;32873;32874;32875;32876;32877;32878;32879;32880;32881;32882;32883	45024;45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035;45036;45037;45038;45039;45040;45041;45042;45043;45044;45045;45046;45047;45048;45049;45050;45051	45035	3204		28	
ATGYLELSNWPEVAPDPSVR	0	Unmodified	2200.08	0.08004782	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	91.704	91.282	2	3.4292E-11	82863	160511_QHF_FH_JSI10i_1	105.14	63.599			0.71263	0.69043	28.767	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71263	0.69043	28.767	2	2	Median	NaN	NaN	NaN	0	0	Median	21338000	15022000	6315800	0	0	0	0	0	0	21338000	15022000	6315800	0	0	0	5308	107	5011	32884;32885;32886;32887;32888	45052;45053;45054;45055;45056	45055			5	
ATGYPLAFIAAK	1	Unmodified	1221.6758	0.67575932	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.6	4	5	4				1	4	4	5	5	7	5	78.051	73.571	2;3	2.5234E-16	65640	160511_QHF_FH_JSI12i_3	166.07	141.14			0.91862	0.91578	12.162	21	4	Median	1.0604	0.91699	14.264	5	2	Median	0.78098	0.93449	10.456	5	1	Median	0.92873	0.91026	7.8416	6	0	Median	0.83946	0.9092	17.462	5	1	Median	5980600000	3127900000	2852700000	965190000	480580000	484610000	1228200000	666570000	561670000	2254200000	1197700000	1056500000	1532900000	783040000	749910000	5309	1372	5012	32889;32890;32891;32892;32893;32894;32895;32896;32897;32898;32899;32900;32901;32902;32903;32904;32905;32906;32907;32908;32909;32910	45057;45058;45059;45060;45061;45062;45063;45064;45065;45066;45067;45068;45069;45070;45071;45072;45073;45074;45075;45076;45077;45078;45079;45080;45081;45082;45083;45084;45085;45086;45087;45088;45089;45090;45091;45092;45093;45094;45095;45096;45097;45098;45099;45100;45101	45098			45	
ATGYPLAYVAAK	1	Unmodified	1223.655	0.65502388	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	1	2	3	56.278	55.554	2	0.00015346	47717	160511_QHF_FH_JSI12i_2	99.815	87.768			0.97923	0.99051	23.471	6	1	Median	0.96904	0.87362	NaN	1	0	Median	0.53773	0.63868	NaN	1	0	Median	1.0273	0.99451	11.219	2	0	Median	1.0713	1.1606	11.762	2	1	Median	376440000	190400000	186040000	47874000	25542000	22332000	53454000	28056000	25398000	139090000	65574000	73517000	136020000	71223000	64795000	5310	1296	5013	32911;32912;32913;32914;32915;32916;32917;32918	45102;45103;45104;45105;45106;45107	45102			5	
ATHAVVR	0	Unmodified	752.42932	0.42932146	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		3.118	2.8041	2	0.016662	1770	160511_QHF_FH_JSI10i_3	62.717	46.17			0.94113	1.085	8.3485	3	0	Plateau	1.5217	1.2558	NaN	1	0	Median	0.94113	1.085	NaN	1	0	Median	1.1364	1.0886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95703000	47625000	48078000	28574000	10258000	18316000	36920000	20751000	16169000	30209000	16616000	13593000	0	0	0	5311	603	5014	32919;32920;32921	45108;45109	45109			2	
ATHDGAPELGAGGTR	0	Unmodified	1408.6695	0.66950474	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	3	5	14.447	14.033	2;3	6.6931E-08	11027	160511_QHF_FH_JSI11i_2	98.353	80.918			0.9395	0.93555	9.6962	7	0	Median	1.0241	0.8716	NaN	1	0	Median	0.74924	0.92894	NaN	1	0	Median	1.1548	1.0968	NaN	1	0	Median	0.89682	0.94605	9.6208	4	0	Median	361590000	188560000	173030000	81774000	42628000	39146000	69580000	37055000	32526000	41783000	18083000	23700000	168450000	90792000	77659000	5312	4529	5015	32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933	45110;45111;45112;45113;45114;45115;45116;45117;45118;45119;45120;45121;45122	45116			12	
ATHGQTCAR	0	Acetyl (Protein N-term)	1042.4614	0.46142622	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	4.9557	3.1846	2	6.6619E-10	2492	160511_QHF_FH_JSI12i_1	166.77	137.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5313	1570	5016	32934;32935;32936;32937;32938	45123;45124;45125;45126;45127	45124			5	
ATHGQTCARPMCIPPSYADLGK	1	Acetyl (Protein N-term)	2472.1348	0.13481906	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS			2	0		3								1	2			57.862	56.975	3	0.0075671	50073	160511_QHF_FH_JSI9i_2	34.914	26.091			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11843000	11843000	0	0	0	0	11843000	11843000	0	0	0	0	0	0	0	5314	1570	5017	32939;32940;32941	45128;45129;45130	45128			3	
ATHIKLPR	1	Acetyl (K)	976.5818	0.58179936	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		33.46	24.135	3	0.00076952	13614	160513_QHF_FH_JSI11Kac_6	88.948	65.519			0.8561	0.82416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8561	0.82416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5513900	4922500	591460	0	0	0	0	0	0	5513900	4922500	591460	0	0	0	5315	1004	5018	32942	45131	45131	799		1	
ATHVVQSEVDK	1	Unmodified	1211.6146	0.61461563	3478	Q8IZ81	ELMOD2	ELMO domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								2	2	2	2	10.573	10.118	2	6.5741E-06	7984	160511_QHF_FH_JSI9i_2	113.93	84.117			0.84812	0.88711	39.85	8	6	Median	1.4679	1.2372	37.361	2	2	Median	0.64516	0.79618	44.783	2	1	Median	0.96298	0.96534	21.627	2	2	Median	0.51991	0.54368	5.1525	2	1	Median	241920000	138480000	103440000	45255000	20077000	25178000	82928000	57169000	25759000	61161000	27158000	34003000	52577000	34073000	18504000	5316	3478	5019	32943;32944;32945;32946;32947;32948;32949;32950	45132;45133;45134;45135;45136;45137;45138	45134			7	
ATIAGGGVIPHIHK	1	Unmodified	1369.783	0.78301836	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.68		2	16						6	7	7	4	6	42.504	39.432	2;3;4	4.9369E-30	33125	160511_QHF_FH_JSI10i_3	192.1	174.23			0.97725	0.99416	38.559	23	6	Median	1.141	0.99416	51.377	7	2	Median	1.0326	1.1737	23.11	6	0	Median	0.93919	0.91424	42.42	4	2	Median	0.86698	0.90995	36.462	6	2	Median	5780600000	2737100000	3043500000	2026900000	774360000	1252500000	1360700000	659870000	700850000	654300000	309350000	344950000	1738700000	993510000	745230000	5317	945	5020	32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962;32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974	45139;45140;45141;45142;45143;45144;45145;45146;45147;45148;45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159;45160;45161;45162;45163;45164;45165;45166;45167;45168;45169;45170;45171;45172;45173;45174;45175;45176;45177;45178	45148			40	
ATIEGYYQK	1	Unmodified	1071.5237	0.52367535	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.748	28.475	2	0.0031216	24789	160511_QHF_FH_JSI9i_1	60.59	37.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5318	690	5021	32975	45179	45179			1	
ATIELCSTHANDASALR	0	Unmodified	1828.8738	0.87376021	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	42.663	41.287	3	0.00048905	35306	160511_QHF_FH_JSI12i_2	59.585	47.44			1.7068	1.8504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7068	1.8504	NaN	1	1	Median	56344000	19405000	36939000	0	0	0	0	0	0	0	0	0	56344000	19405000	36939000	5319	1844	5022	32976;32977	45180;45181	45181			2	
ATIEQFMK	1	Unmodified	966.48445	0.48445308	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	49.877	48.916	2	6.8081E-05	42080	160511_QHF_FH_JSI11i_2	133.6	110.08			0.9868	1.042	3.3653	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99779	1.0175	NaN	1	0	Median	0.97593	1.0671	NaN	1	0	Median	508390000	228570000	279830000	0	0	0	0	0	0	320760000	127980000	192780000	187640000	100590000	87047000	5320	4326	5023	32978;32979	45182;45183;45184	45184			3	
ATIFEINASSR	0	Unmodified	1207.6197	0.619701	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	1	2	1	63.268	52.515	2	0.0095969	27680	160513_QHF_FH_JSI9Kac_5	54.608	29.832			1.1997	1.1291	12.289	4	0	Median	1.2266	1.0247	NaN	1	0	Median	0.86229	1.0155	NaN	1	0	Median	1.2673	1.2442	NaN	1	0	Median	1.1735	1.2778	NaN	1	0	Median	14487000	6277500	8209200	3127000	1319300	1807600	4252000	2318100	1933800	4286000	1378300	2907700	2821800	1261800	1560000	5321	3720	5024	32980;32981;32982;32983;32984	45185;45186;45187;45188	45185			4	
ATIFNLK	1	Unmodified	805.46979	0.46978929	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	1	4	51.05	50.095	2	0.0027691	42845	160511_QHF_FH_JSI12i_3	103.29	65.64			1.0548	1.0624	60.964	6	2	Median	1.4234	1.1724	NaN	1	0	Median	0.43826	0.51384	99.098	2	0	Median	1.0547	1.0116	NaN	1	0	Median	1.1014	1.1888	12.269	2	2	Median	1238400000	643610000	594800000	106950000	41023000	65926000	232650000	144500000	88145000	311920000	141960000	169970000	586880000	316120000	270760000	5322	4535	5025	32985;32986;32987;32988;32989;32990;32991;32992	45189;45190;45191;45192;45193;45194;45195;45196	45196			8	
ATIGADFLTK	1	Unmodified	1035.5601	0.56006086	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.21	4	4	3				3	4		4	4	5	5	62.788	57.887	2	2.1198E-07	50126	160511_QHF_FH_JSI11i_2	132.01	84.929			0.98002	0.96376	21.807	17	3	Median	1.1365	0.9348	13.645	4	0	Median	0.75995	0.9238	20.505	4	1	Median	1.0191	0.99508	12.269	4	0	Median	0.89635	1.0121	34.154	5	2	Median	4200900000	2344600000	1856300000	726870000	397040000	329830000	849900000	483120000	366780000	1448400000	791280000	657100000	1175700000	673140000	502590000	5323	1728	5026	32993;32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004;33005;33006;33007;33008;33009;33010	45197;45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213;45214;45215;45216;45217;45218;45219;45220;45221;45222;45223;45224	45215			28	
ATIGILITTIASK	1	Unmodified	1300.7966	0.79660274	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	90.543	86.161	2	1.8523E-08	43334	160513_QHF_FH_JSI9Kac_6	116.54	107.68			0.8815	0.89568	25.165	8	0	Median	1.0568	0.89259	21.81	2	0	Median	0.73892	0.84133	17.685	2	0	Median	1.0671	1.0073	33.715	2	0	Median	1.0741	1.1134	39.601	2	0	Median	428330000	220160000	208170000	114150000	62538000	51613000	137720000	82025000	55695000	105340000	43087000	62251000	71122000	32509000	38613000	5324	205	5027	33011;33012;33013;33014;33015;33016;33017;33018	45225;45226;45227;45228;45229;45230;45231;45232;45233	45230			9	
ATIGLIR	0	Unmodified	742.47012	0.47012364	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	3	2	37.812	37.096	2	0.001399	31683	160511_QHF_FH_JSI12i_3	121.14	16.89			1.0046	1.066	11.671	8	1	Median	1.2801	1.0664	8.3249	2	0	Median	0.97787	1.1749	8.41	2	1	Median	1.0934	1.0599	19.034	2	0	Median	0.95048	0.96697	8.4372	2	0	Median	1210600000	586940000	623640000	282900000	116710000	166180000	298530000	144870000	153660000	280490000	140030000	140460000	348660000	185320000	163340000	5325	1065	5028	33019;33020;33021;33022;33023;33024;33025;33026;33027	45234;45235;45236;45237;45238;45239;45240;45241;45242;45243;45244;45245	45245			12	
ATIGVGLGLPSFKPGFAEQSLMK	2	Unmodified	2347.261	0.26098907	4084	Q96G74	OTUD5	OTU domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			100.22	100.03	3	7.6665E-06	81034	160511_QHF_FH_JSI9i_3	62.19	59.137			0.87812	0.85825	0.67659	2	0	Median	1.0181	0.85415	NaN	1	0	Median	0.75739	0.86236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24064000	11120000	12944000	12327000	4351000	7975800	11738000	6769300	4968300	0	0	0	0	0	0	5326	4084	5029	33028;33029	45246	45246			1	
ATILCTSYVQFK	1	Unmodified	1429.7275	0.72753689	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4		1	2	2	75.323	66.893	2	7.6934E-50	36105	160513_QHF_FH_JSI11Kac_6	210.08	163.61			0.82617	0.78728	65.867	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0021	1.199	NaN	1	1	Median	0.82617	0.78728	NaN	1	0	Median	2.6132	2.8642	NaN	1	1	Median	100720000	52130000	48590000	0	0	0	39396000	23647000	15750000	50527000	25163000	25364000	10797000	3320800	7475800	5327	1427	5030	33030;33031;33032;33033;33034	45247;45248;45249;45250;45251;45252	45248			6	
ATILDLSCNK	1	Unmodified	1133.5751	0.575059	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.12	6.11	3	2					3				3	3	2	54.203	49.782	2	0.00017305	28224	160513_QHF_FH_JSI11Kac_4	96.331	69.889			0.94474	1.0179	26.012	8	2	Median	NaN	NaN	NaN	0	0	Median	0.91361	1.1011	16.565	3	2	Median	0.92804	0.91055	20.265	3	0	Median	1.2997	1.3937	5.7133	2	0	Median	1020300000	517070000	503260000	0	0	0	337090000	167110000	169980000	427050000	238620000	188440000	256200000	111350000	144850000	5328	3968	5031	33035;33036;33037;33038;33039;33040;33041;33042	45253;45254;45255;45256;45257;45258;45259;45260;45261	45258			9	
ATIQGVLR	0	Unmodified	856.51305	0.51305109	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.75	0.433	1	3								1	1	1	1	33.701	32.959	2	0.0012375	29095	160511_QHF_FH_JSI10i_2	92.187	49.187			0.9574	0.92677	16.084	4	0	Median	1.0913	0.91879	NaN	1	0	Median	0.74826	0.93482	NaN	1	0	Median	0.83996	0.84378	NaN	1	0	Median	1.1795	1.2234	NaN	1	0	Median	334380000	182810000	151570000	93152000	50529000	42623000	97964000	62728000	35236000	68662000	33759000	34903000	74607000	35796000	38811000	5329	726	5033	33043;33044;33045;33046	45262	45262			1	
ATISNDGATILK	1	Unmodified	1202.6507	0.65066678	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.7	4	4	2			3	3			3	5	4	4	44.754	40.452	2	3.0485E-23	36618	160511_QHF_FH_JSI11i_1	180.67	137.59			0.86282	0.93995	23.527	16	4	Median	0.89177	0.73649	18.588	3	1	Median	0.81199	0.95127	14.085	5	1	Median	0.921	0.89255	15.022	4	1	Median	0.91831	1.0006	43.147	4	1	Median	9958200000	5100400000	4857800000	2027400000	927060000	1100400000	2345000000	1310300000	1034700000	2696900000	1431800000	1265100000	2888800000	1431200000	1457600000	5330	4321	5034	33047;33048;33049;33050;33051;33052;33053;33054;33055;33056;33057;33058;33059;33060;33061;33062	45263;45264;45265;45266;45267;45268;45269;45270;45271;45272;45273;45274;45275;45276;45277;45278;45279;45280;45281;45282;45283;45284;45285;45286;45287;45288;45289;45290;45291;45292	45265			30	
ATISNDGATILKLLDVVHPAAK	2	Acetyl (K)	2288.274	0.2739966	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		95.409	86.017	3	7.9744E-17	48706	160513_QHF_FH_JSI11Kac_6	126.88	111.63			0.2545	0.24365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2545	0.24365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72495000	56954000	15541000	0	0	0	0	0	0	72495000	56954000	15541000	0	0	0	5331	4321	5035	33063	45293;45294	45294	3128		2	
ATISNPITGDLETVHYR	0	Unmodified	1885.9534	0.95339074	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	65.112	64.627	3	4.464E-05	55722	160511_QHF_FH_JSI12i_3	85.563	74.619			0.87968	0.94906	44.718	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60433	0.59348	56.703	2	1	Median	0.83018	0.94906	14.189	3	2	Plateau	301030000	174750000	126270000	0	0	0	0	0	0	118600000	69807000	48798000	182420000	104950000	77474000	5332	1035	5036	33064;33065;33066;33067;33068	45295;45296;45297;45298;45299	45298			4	
ATISPWPGTTLNLLK	1	Unmodified	1610.9032	0.90319307	3612	Q8NC60	NOA1	Nitric oxide-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	96.83	96.68	2;3	9.9483E-05	83580	160511_QHF_FH_JSI12i_3	117.09	98.419			1.0324	1.0996	20.081	4	0	Median	NaN	NaN	NaN	0	0	Median	0.76892	0.92511	28.701	2	0	Median	1.1499	1.0669	NaN	1	0	Median	1.1337	1.1646	NaN	1	0	Median	72122000	38259000	33862000	0	0	0	15142000	9004100	6138200	15760000	8687200	7072700	41220000	20568000	20652000	5333	3612	5037	33069;33070;33071;33072;33073	45300;45301;45302;45303;45304;45305;45306;45307	45305			8	
ATITEEAYQK	1	Unmodified	1152.5663	0.56626845	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			24.262	23.506	2	2.1366E-06	20552	160511_QHF_FH_JSI10i_1	168.25	126.8			4.0175	3.8889	58.886	2	2	Median	7.2631	5.8974	NaN	1	1	Median	2.2222	2.5644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	953260000	136420000	816840000	639020000	53108000	585910000	314240000	83316000	230930000	0	0	0	0	0	0	5334	2273	5038	33074;33075	45308;45309	45308			2	
ATKPQPVNTSSVTVK	2	Unmodified	1555.857	0.85697116	3800	Q8WWK9	CKAP2	Cytoskeleton-associated protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	22.966	22.544	3	5.0565E-05	18507	160511_QHF_FH_JSI12i_3	98.507	80.412			0.6721	0.79073	20.68	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6721	0.79073	NaN	1	0	Median	1.0743	0.99813	NaN	1	0	Median	0.66325	0.66078	NaN	1	0	Median	209890000	107220000	102670000	0	0	0	44202000	24983000	19219000	89484000	41609000	47874000	76206000	40628000	35578000	5335	3800	5039	33076;33077;33078	45310;45311;45312;45313;45314	45314			5	
ATLDVFFVPLK	1	Unmodified	1248.7118	0.71181048	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	16	0									3	1		1	1	91.601	82.407	2	0.032414	46298	160513_QHF_FH_JSI11Kac_6	60.298	49.939			1.1373	1.2024	22.099	3	0	Median	1.4354	1.2429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8833	0.83463	NaN	1	0	Median	1.1373	1.2024	NaN	1	0	Median	153990000	69003000	84984000	47283000	18032000	29251000	0	0	0	75204000	34965000	40239000	31499000	16006000	15493000	5336	5113	5040	33079;33080;33081	45315	45315			0	
ATLENITNLRPVGEDFR	0	Unmodified	1944.0065	0.0064889465	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	72.017	71.237	3	5.2414E-06	63476	160511_QHF_FH_JSI11i_3	96.773	86.852			0.98007	0.92931	33.492	7	1	Median	1.5225	1.2775	28.19	2	1	Median	0.85168	0.99945	15.658	2	0	Median	0.72464	0.70205	39.662	2	0	Median	0.75626	0.75829	NaN	1	0	Median	811560000	411280000	400270000	189680000	77156000	112520000	306960000	163080000	143870000	268790000	143430000	125360000	46130000	27614000	18517000	5337	5075	5041	33082;33083;33084;33085;33086;33087;33088	45316;45317;45318;45319;45320;45321;45322;45323	45316			8	
ATLEVILR	0	Unmodified	913.55967	0.55966693	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			24.094	22.839	3	0.029897	18796	160511_QHF_FH_JSI10i_3	22.74	6.5373			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5338	4927	5042	33089	45324	45324			1	
ATLEVILRPK	1	Unmodified	1138.7074	0.7073938	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	2	2	3	54.709	50.472	2;3	8.747E-09	44179	160511_QHF_FH_JSI11i_3	111.06	102.1			0.96864	0.94346	19.111	10	2	Median	1.1593	0.95295	9.3303	3	1	Plateau	0.76763	0.8961	2.3712	2	0	Median	1.056	1.0155	8.2652	2	0	Median	0.79086	0.78447	35.149	3	1	Plateau	618890000	288730000	330160000	87910000	38106000	49805000	127930000	71200000	56726000	144270000	61336000	82936000	258780000	118090000	140700000	5339	4927	5043	33090;33091;33092;33093;33094;33095;33096;33097;33098;33099	45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335	45325			11	
ATLEVSSIIK	1	Unmodified	1059.6176	0.61757574	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.713	60.399	2	0.026572	51854	160511_QHF_FH_JSI12i_2	48.091	26.643			1.5861	1.655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5861	1.655	NaN	1	1	Median	16717000	7576600	9140800	0	0	0	0	0	0	0	0	0	16717000	7576600	9140800	5340	4881	5044	33100	45336	45336			1	
ATLITFLCDR	0	Unmodified	1208.6223	0.62234354	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				81.729	80.388	2	0.0017587	66153	160511_QHF_FH_JSI9i_3	67.993	56.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5341	1005	5045	33101	45337	45337			1	
ATLIYVDK	1	Acetyl (Protein N-term)	963.5277	0.5276981	748	O95997;Q9NZH5;Q9NZH4	PTTG1;PTTG2;PTTG3P	Securin;Securin-2;Putative pituitary tumor-transforming gene 3 protein	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	5.39	2				3					1	1	2	1	71.469	68.289	2	0.0063729	29394	160513_QHF_FH_JSI12Kac_2	71.501	25.075			0.69896	0.6735	105.32	2	2	Median	0.38054	0.31981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2838	1.4183	NaN	1	1	Median	17536000	15792000	1743700	9151200	7939200	1212000	6321900	6321900	0	0	0	0	2062900	1531100	531750	5342	748	5046	33102;33103;33104;33105;33106	45338;45339;45340;45341;45342	45342			5	
ATLKDQLIYNLLK	2	Acetyl (Protein N-term)	1573.9079	0.9079441	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	1	0	1				By MS/MS	3	0			1										1	101.54	101.56	2	0.0001466	88235	160511_QHF_FH_JSI12i_3	89.356	74.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129400000	0	129400000	0	0	0	0	0	0	0	0	0	129400000	0	129400000	5343	761	5047	33107	45343	45343			1	
ATLLEDQQDPSPSS	0	Unmodified	1486.6787	0.67873203	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.251	41.623	2	2.4268E-07	37736	160511_QHF_FH_JSI11i_1	119.53	101.09			0.64815	0.67832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64815	0.67832	NaN	1	1	Median	35597000	17094000	18503000	0	0	0	0	0	0	0	0	0	35597000	17094000	18503000	5344	4848	5048	33108;33109	45344;45345	45344			2	
ATLLSLR	0	Unmodified	772.48069	0.48068833	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	46.541	45.687	2	0.0088673	37709	160511_QHF_FH_JSI9i_3	81.613	28.038			1.0299	1.062	8.6002	4	0	Median	1.4462	1.1935	NaN	1	0	Median	0.95023	1.0947	NaN	1	0	Median	1.1163	1.0302	NaN	1	0	Median	0.94866	0.97682	NaN	1	0	Median	196910000	91305000	105610000	68729000	30623000	38106000	46022000	22063000	23959000	41033000	21605000	19427000	41129000	17014000	24115000	5345	2993	5049	33110;33111;33112;33113	45346;45347	45347			2	
ATLNAFLYHMGQHSNK	1	Unmodified	1830.8835	0.88353704	2957	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			62.638	54.075	3;4	1.2213E-07	29712	160513_QHF_FH_JSI10Kac_6	111.95	84.924			0.97741	1.1437	12.906	3	1	Median	1.0695	0.91656	NaN	1	1	Median	0.96922	1.1461	0.30363	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	274880000	136950000	137930000	27155000	16499000	10656000	247730000	120450000	127280000	0	0	0	0	0	0	5346	2957	5050	33114;33115;33116	45348;45349;45350;45351;45352	45350			5	
ATLNAFLYR	0	Unmodified	1067.5764	0.57637963	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.89	6.62		2	2					1	4	2	1	3	3	66.842	60.806	2	3.9848E-24	33338	160513_QHF_FH_JSI10Kac_6	185.84	168.45			1.0254	1.0308	19.125	8	1	Median	1.6392	1.3939	13.253	2	0	Median	0.85108	1.0039	NaN	1	0	Median	0.98632	0.9567	14.291	2	0	Median	0.93302	0.93213	15.429	3	1	Plateau	766490000	363300000	403190000	78186000	27844000	50342000	119580000	59834000	59750000	247210000	124690000	122510000	321510000	150930000	170590000	5347	5035	5051	33117;33118;33119;33120;33121;33122;33123;33124;33125	45353;45354;45355;45356;45357;45358;45359;45360;45361;45362;45363;45364	45363			12	
ATLPDADK	1	Unmodified	829.41815	0.41814765	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.072	15.603	2	0.0021249	13371	160511_QHF_FH_JSI12i_1	82.452	43.661			0.89471	0.9055	29.974	4	0	Median	0.84571	0.67554	NaN	1	0	Median	0.68172	0.82633	NaN	1	0	Median	1.3945	1.3685	NaN	1	0	Median	0.94654	0.99225	NaN	1	0	Median	1076100000	614160000	461970000	246640000	141260000	105380000	272960000	192860000	80099000	252500000	112740000	139770000	304030000	167300000	136730000	5348	1021	5052	33126;33127;33128;33129	45365;45366;45367;45368;45369;45370;45371;45372	45368			8	
ATLPSPDK	1	Unmodified	827.43888	0.43888309	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	3	2	1	23.127	19.486	2	0.00066178	11990	160513_QHF_FH_JSI11Kac_3	108.46	51.18			0.59475	0.48909	37.187	7	4	Median	0.59475	0.48382	NaN	1	1	Median	0.35979	0.42698	42.716	3	1	Plateau	0.68071	0.66755	55.675	2	1	Median	0.46111	0.48909	NaN	1	1	Median	2927900000	2047100000	880880000	657400000	411120000	246280000	756030000	559530000	196500000	786710000	541810000	244910000	727810000	534610000	193200000	5349	1208	5053	33130;33131;33132;33133;33134;33135;33136	45373;45374;45375;45376;45377;45378	45375			6	
ATLPSPDKLPGFK	2	Unmodified	1369.7606	0.76055158	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.92	3	6	9					1		4	6	4	5	61.439	60.14	2;3	1.3324E-10	51718	160511_QHF_FH_JSI12i_3	122.42	107.86			1.0858	1.0339	14.368	17	4	Median	1.2278	1.027	4.1731	4	0	Median	0.82988	0.97712	21.351	4	1	Median	0.97494	0.92237	11.11	4	1	Median	1.1021	1.1386	12.676	5	2	Median	5436000000	2749400000	2686600000	468750000	225390000	243360000	729500000	383550000	345950000	1429600000	671330000	758290000	2808100000	1469200000	1339000000	5350	1208	5054	33137;33138;33139;33140;33141;33142;33143;33144;33145;33146;33147;33148;33149;33150;33151;33152;33153;33154;33155	45379;45380;45381;45382;45383;45384;45385;45386;45387;45388;45389;45390;45391;45392;45393;45394;45395;45396;45397;45398;45399;45400;45401;45402;45403;45404;45405;45406;45407;45408;45409;45410;45411;45412;45413;45414	45411			35	
ATLQEILPEVLK	1	Unmodified	1352.7915	0.79151736	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	98.27	98.13	2	2.8962E-31	86284	160511_QHF_FH_JSI11i_2	187.42	176.06			0.98225	1.0222	8.0441	8	0	Median	1.1292	0.95324	NaN	1	0	Median	0.86233	1.0379	6.7076	2	0	Median	1.0654	1.0556	10.329	3	0	Median	0.96989	1.0327	11.472	2	0	Median	397600000	202760000	194840000	72087000	30507000	41580000	101970000	59742000	42225000	124600000	60962000	63639000	98948000	51554000	47394000	5351	4361	5055	33156;33157;33158;33159;33160;33161;33162;33163	45415;45416;45417;45418;45419;45420;45421;45422;45423;45424;45425;45426;45427;45428;45429;45430;45431	45428			16	
ATLSEDKK	2	Unmodified	890.47091	0.4709115	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	5.7126	5.271	2;3	0.0011642	3204	160511_QHF_FH_JSI11i_2	93.429	37.752			1.24	1.242	39.791	5	1	Median	1.5731	1.3297	NaN	1	0	Median	0.60388	0.76008	NaN	1	0	Median	1.24	1.242	NaN	1	0	Median	1.5318	1.6702	46.668	2	1	Median	301950000	125500000	176460000	54012000	23539000	30473000	40764000	19929000	20835000	73046000	30896000	42150000	134130000	51135000	82998000	5352	4777	5056	33164;33165;33166;33167;33168	45432;45433;45434;45435;45436;45437;45438;45439;45440	45438			9	
ATLSNPKPQK	2	Unmodified	1082.6084	0.60840804	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	9.6233	9.3398	3	0.0028816	7030	160511_QHF_FH_JSI10i_3	50.194	32.386			1.0299	1.0646	26.617	4	0	Median	1.6936	1.3981	NaN	1	0	Median	0.8216	0.94856	NaN	1	0	Median	1.2911	1.1949	NaN	1	0	Median	0.78047	0.76111	NaN	1	0	Median	352080000	171790000	180290000	70386000	23689000	46697000	66733000	36248000	30485000	86811000	36534000	50277000	128150000	75319000	52830000	5353	4143	5057	33169;33170;33171;33172	45441	45441			1	
ATLSSIR	0	Unmodified	746.42865	0.42865276	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.65	4	2	4				2	4	4	5	6	5	4	21.619	17.046	2	0.00010483	14105	160511_QHF_FH_JSI12i_3	139.92	80.276			0.96976	1.0194	11.193	20	0	Median	1.3183	1.116	7.5905	5	0	Median	0.90532	1.0829	6.6906	6	0	Median	0.98518	0.97458	13.235	5	0	Median	0.89306	0.94234	11.706	4	0	Median	13382000000	6244500000	7137300000	2974600000	1149400000	1825200000	3520300000	1872600000	1647700000	3811000000	1765600000	2045300000	3076000000	1457000000	1619000000	5354	1592	5058	33173;33174;33175;33176;33177;33178;33179;33180;33181;33182;33183;33184;33185;33186;33187;33188;33189;33190;33191;33192	45442;45443;45444;45445;45446;45447;45448;45449;45450;45451;45452;45453;45454;45455;45456;45457;45458;45459;45460;45461;45462;45463;45464;45465	45464			24	
ATLSSTSGLDLMSESGEGEISPQR	0	Unmodified	2451.1435	0.14351229	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	72.868	72.293	2	5.6981E-88	65406	160511_QHF_FH_JSI10i_1	213.49	193.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10022000	10022000	0	0	0	0	0	0	0	0	0	0	10022000	10022000	0	5355	3799	5059	33193;33194	45466;45467	45467			2	
ATLTQMLNVIFAR	0	Unmodified	1476.8123	0.81226958	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		97.33	88.92	2	1.0105E-109	52992	160513_QHF_FH_JSI10Kac_6	269.33	221.73			1.0268	1.088	11.43	4	3	Median	1.4234	1.2125	NaN	1	1	Median	1.0026	1.1856	NaN	1	0	Median	1.0268	0.98512	1.9026	2	2	Median	NaN	NaN	NaN	0	0	Median	514120000	247430000	266690000	92272000	31380000	60892000	202650000	97837000	104820000	219200000	118220000	100980000	0	0	0	5356	5719	5060	33195;33196;33197;33198	45468;45469;45470;45471;45472	45471			5	
ATLTQMLNVIFTR	0	Unmodified	1506.8228	0.82283426	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		96.66	90.939	2	1.3798E-50	52745	160513_QHF_FH_JSI10Kac_6	207.95	173.42			0.92062	1.0865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92062	1.0865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225400000	121030000	104380000	0	0	0	225400000	121030000	104380000	0	0	0	0	0	0	5357	5718	5061	33199;33200	45473;45474	45474			2	
ATLVESSTSGFTPGGGGSSVSMIASR	0	Unmodified	2442.1697	0.16966746	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.853	4	3	4							2	4	1	4	71.407	70.763	2;3	2.1405E-69	63229	160511_QHF_FH_JSI11i_3	222.3	210.68			0.95136	0.96351	16.663	9	3	Median	1.4749	1.2793	NaN	1	0	Median	0.73202	0.87898	25.637	3	2	Plateau	1.0234	0.96351	NaN	1	0	Median	0.94442	0.95189	6.6613	4	1	Median	352490000	178250000	174240000	37082000	17828000	19254000	80538000	41021000	39517000	37689000	20300000	17389000	197180000	99100000	98079000	5358	1649	5062	33201;33202;33203;33204;33205;33206;33207;33208;33209;33210;33211	45475;45476;45477;45478;45479;45480;45481;45482;45483;45484;45485;45486;45487;45488;45489;45490	45475			15	
ATLVESSTSGFTPGGGGSSVSMIASR	0	Oxidation (M)	2458.1646	0.16458209	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	0		By MS/MS	By MS/MS		1	0	3										2	1		63.762	63.356	3	0.0009181	57577	160511_QHF_FH_JSI11i_1	40.756	26.142			0.62931	0.6697	30.785	2	2	Median	NaN	NaN	NaN	0	0	Median	0.70547	0.83257	NaN	1	1	Median	0.56137	0.5387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36549000	26281000	10268000	0	0	0	16295000	10831000	5463700	20254000	15450000	4804100	0	0	0	5359	1649	5062	33212;33213;33214	45491;45492;45493	45491		1310	3	
ATLVTITNNIGSVAR	0	Unmodified	1528.8573	0.85730551	4801	Q9H999	PANK3	Pantothenate kinase 3	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				70.508	69.022	2	4.2713E-06	56708	160511_QHF_FH_JSI9i_3	87.363	66.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5360	4801	5063	33215;33216	45494;45495	45495			2	
ATLWYVPLSLK	1	Unmodified	1289.7384	0.73835958	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.29		6	3						2	3	2	3	3	96.301	94.851	2	1.0406E-09	44504	160513_QHF_FH_JSI9Kac_6	129.85	102.11			0.9448	1.0052	55.886	11	5	Median	1.205	1.0232	106.61	3	0	Median	0.7326	0.89215	0.96791	2	1	Median	1.193	1.1314	8.7364	3	2	Plateau	0.90427	1.0052	11.142	3	2	Median	2351400000	1193700000	1157800000	817940000	392810000	425130000	772900000	438170000	334730000	391010000	182610000	208400000	369590000	180090000	189500000	5361	99	5064	33217;33218;33219;33220;33221;33222;33223;33224;33225;33226;33227	45496;45497;45498;45499;45500;45501;45502;45503;45504;45505;45506;45507;45508;45509;45510	45506			15	
ATLYVTAIEDR	0	Unmodified	1250.6507	0.65066678	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.5		4	1					3	1	2	2	2	3	60.28	54.526	2	1.7161E-10	27532	160513_QHF_FH_JSI10Kac_5	132.78	83.983			0.94221	0.96488	18.141	8	0	Median	1.1337	0.9789	NaN	1	0	Median	0.75439	0.90616	2.1055	2	0	Median	0.91771	0.91637	5.2538	2	0	Median	0.91371	1.0107	19.583	3	0	Plateau	1154300000	604080000	550220000	183610000	82986000	100620000	245960000	136270000	109690000	331610000	165740000	165870000	393120000	219080000	174040000	5362	4325	5065	33228;33229;33230;33231;33232;33233;33234;33235;33236	45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523	45522			13	
ATMCNLLAYLK	1	Unmodified	1296.657	0.65701449	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	90.677	90.644	2	4.0486E-05	80836	160511_QHF_FH_JSI11i_3	99.013	79.909			0.81307	0.77825	31.596	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67793	0.62243	NaN	1	1	Median	0.97513	0.97307	NaN	1	1	Median	85488000	44963000	40525000	0	0	0	0	0	0	31893000	19981000	11911000	53595000	24981000	28614000	5363	941	5066	33237;33238;33239	45524;45525;45526	45525			3	
ATMDAGK	1	Unmodified	692.31633	0.31632512	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	1	2	5.3688	5.1405	2	0.0080014	1892	160513_QHF_FH_JSI12Kac_3	72.138	47.14			0.97187	1.0453	8.7082	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.87007	1.0421	NaN	1	1	Median	1.0856	1.0611	NaN	1	1	Median	1.1411	1.2217	NaN	1	1	Median	6039400000	2383900000	3655500000	0	0	0	2051900000	882270000	1169600000	2092500000	861410000	1231100000	1894900000	640200000	1254700000	5364	1835	5067	33240;33241;33242;33243	45527;45528;45529;45530	45530			4	
ATMEAYSR	0	Unmodified	927.41202	0.41201641	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	4	2	13.732	12.445	2	0.00098289	9947	160511_QHF_FH_JSI12i_2	95.605	80.107			1.0061	1.0965	13.472	9	1	Median	1.5253	1.2828	19.958	2	0	Median	0.89539	1.1001	14.345	2	0	Median	1.0506	1.0475	7.9232	3	1	Plateau	1.0137	1.0907	5.1023	2	0	Median	1249200000	618830000	630330000	249370000	106470000	142900000	378320000	194520000	183800000	319080000	160580000	158500000	302380000	157250000	145130000	5365	1170	5068	33244;33245;33246;33247;33248;33249;33250;33251;33252;33253	45531;45532;45533;45534;45535;45536;45537;45538;45539;45540	45532			10	
ATMEAYSR	0	Oxidation (M)	943.40693	0.40693104	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By matching	1.25	0.433	3	1								1		2	1	12.975	12.558	2	0.056226	9864	160511_QHF_FH_JSI11i_2	40.067	28.699			1.0819	1.0439	11.746	4	0	Median	1.2932	1.0492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0819	1.0513	1.7297	2	0	Median	0.79295	0.83139	NaN	1	0	Median	180080000	86784000	93293000	68440000	27695000	40746000	0	0	0	82035000	42415000	39620000	29601000	16675000	12927000	5366	1170	5068	33254;33255;33256;33257	45541	45541			1	
ATMILTVGGTAYAIYELAVASFPK	1	Unmodified	2486.3131	0.31308422	1053	P14406	COX7A2	Cytochrome c oxidase subunit 7A2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			114.22	108.5	3	0.016902	63314	160513_QHF_FH_JSI10Kac_6	42.106	28.786			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5367	1053	5069	33258	45542	45542			1	
ATMPIWVVLLSR	0	Unmodified	1384.7901	0.79007757	4149	Q96K37	SLC35E1	Solute carrier family 35 member E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	96.699	88.623	2	1.6201E-16	52481	160513_QHF_FH_JSI10Kac_6	146.16	100			0.92918	1.0052	21.659	3	0	Plateau	1.3144	1.1449	NaN	1	0	Median	0.85042	1.0052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4434	1.5344	NaN	1	0	Median	779910000	369960000	409950000	261890000	115910000	145980000	345050000	186510000	158540000	0	0	0	172970000	67538000	105430000	5368	4149	5070	33259;33260;33261	45543;45544;45545	45545			3	
ATMQNLNDR	0	Unmodified	1061.4924	0.492392	65	Q04695;CON__Q04695;CON__Q9QWL7;CON__Q99PS0;CON__Q9C075;Q9C075	KRT17;KRT23	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 23	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	3	3	15.539	13.601	2	1.2067E-06	11278	160511_QHF_FH_JSI9i_2	133.86	111.73		+	0.95194	0.90153	17.568	10	0	Median	1.0235	0.8445	3.2391	2	0	Median	0.61104	0.72497	11.125	2	0	Median	0.91883	0.89499	13.577	3	0	Plateau	0.88148	0.94122	15.065	3	0	Median	1650600000	855690000	794870000	356220000	186250000	169980000	400820000	226230000	174590000	446320000	215340000	230980000	447190000	227870000	219320000	5369	65	5071	33262;33263;33264;33265;33266;33267;33268;33269;33270;33271	45546;45547;45548;45549;45550;45551;45552;45553;45554;45555;45556;45557;45558;45559;45560	45553			15	
ATMQNLNDR	0	Oxidation (M)	1077.4873	0.48730662	65	Q04695;CON__Q04695;CON__Q9QWL7;CON__Q99PS0;CON__Q9C075;Q9C075	KRT17;KRT23	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 23	yes	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		2	1	14.341	13.848	2	0.010726	11635	160511_QHF_FH_JSI12i_1	53.775	42.406		+	1.5012	1.3491	51.053	5	0	Median	1.0471	0.90534	56.406	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2126	1.1823	67.263	2	0	Median	1.6296	1.7073	NaN	1	0	Median	221670000	106260000	115410000	91627000	43866000	47761000	0	0	0	91193000	44746000	46447000	38852000	17647000	21205000	5370	65	5071	33272;33273;33274;33275;33276	45561;45562;45563;45564	45563		32	4	
ATMYNLLAYIK	1	Unmodified	1299.6897	0.68969482	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	93.703	90.234	2	1.1227E-26	44645	160513_QHF_FH_JSI11Kac_6	176.83	156.84			0.77419	0.71477	29.708	7	0	Median	0.73624	0.6199	20.138	2	0	Median	0.58671	0.69357	37.428	2	0	Median	0.86166	0.81906	20.551	2	0	Median	1.1424	1.1829	NaN	1	0	Median	1539400000	891570000	647830000	393550000	222190000	171360000	469880000	310320000	159560000	562320000	301150000	261170000	113650000	57912000	55738000	5371	213	5072	33277;33278;33279;33280;33281;33282;33283	45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577	45569			13	
ATNDEIFSILK	1	Unmodified	1249.6554	0.65541781	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	79.713	79.088	2	8.6617E-06	72023	160511_QHF_FH_JSI12i_1	111.86	71.131			0.66162	0.69398	34.629	9	8	Median	0.92716	0.79003	6.1445	2	2	Median	0.5502	0.65774	7.586	2	2	Median	0.41968	0.41545	62.508	2	1	Median	0.70092	0.73798	10.289	3	3	Median	909390000	550040000	359350000	167970000	89011000	78955000	184350000	117260000	67088000	245380000	167030000	78356000	311700000	176740000	134950000	5372	2284	5073	33284;33285;33286;33287;33288;33289;33290;33291;33292	45578;45579;45580;45581;45582;45583;45584;45585;45586;45587	45581			10	
ATNESEDEIPQLVPIGK	1	Unmodified	1838.9262	0.92617294	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	73.846	73.345	2;3	7.7169E-22	65349	160511_QHF_FH_JSI9i_1	169.62	156.19			0.93915	0.88552	10.655	8	3	Median	1.0492	0.86314	10.425	2	0	Median	0.72279	0.85003	1.6499	2	1	Median	1.0062	0.98868	12.2	2	1	Median	0.92234	0.95568	14.168	2	1	Median	723500000	375790000	347700000	158730000	77115000	81613000	168190000	99804000	68386000	207690000	103650000	104040000	188890000	95222000	93665000	5373	596	5074	33293;33294;33295;33296;33297;33298;33299;33300	45588;45589;45590;45591;45592;45593;45594;45595;45596;45597;45598;45599;45600;45601;45602;45603	45601			16	
ATNFLAHEK	1	Acetyl (Protein N-term)	1071.5349	0.53490874	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.28	4	4	4			3	3	4	2	4	6	6	8	47.497	42.408	2	9.8281E-17	24206	160513_QHF_FH_JSI12Kac_4	90.657	50.388			1.0394	1.0716	87.92	22	3	Median	1.273	1.051	9.7124	4	0	Median	0.92083	1.0979	26.207	6	0	Median	1.0394	1.0196	111.73	6	1	Median	0.99634	1.087	135.25	6	2	Median	15696000000	7797700000	7898400000	2944200000	1254700000	1689500000	3258700000	1819200000	1439500000	5605800000	2771000000	2834800000	3887300000	1952800000	1934500000	5374	1327	5075	33301;33302;33303;33304;33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316;33317;33318;33319;33320;33321;33322;33323;33324	45604;45605;45606;45607;45608;45609;45610;45611;45612;45613;45614;45615;45616;45617;45618;45619;45620;45621;45622;45623;45624;45625;45626;45627;45628;45629;45630;45631;45632;45633;45634;45635;45636;45637;45638;45639	45630			36	
ATNFLAHEKIWFDK	2	Acetyl (K);Acetyl (Protein N-term)	1802.8992	0.89917033	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	1	0	1			By MS/MS		16	0									2			2		91.131	81.77	2;3	1.0224E-44	45841	160513_QHF_FH_JSI11Kac_6	222.56	184.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5375	1327	5076	33325;33326	45640;45641	45640	1257		2	
ATNIEQIFR	0	Acetyl (Protein N-term)	1132.5877	0.58767259	1141	P18583	SON	Protein SON	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.998	85.542	2	2.3232E-05	77887	160511_QHF_FH_JSI12i_1	113.71	81.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5376	1141	5077	33327;33328;33329;33330	45642;45643;45644;45645;45646;45647	45643			6	
ATNIEVLSNTFQFTNEAR	0	Unmodified	2054.0069	0.006882877	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1								2	2	4	85.236	84.644	2;3	1.469E-41	76857	160511_QHF_FH_JSI10i_1	209.39	171.37			0.74254	0.74573	16.403	6	1	Median	NaN	NaN	NaN	0	0	Median	0.8017	0.90242	NaN	1	0	Median	0.63629	0.63881	19.668	2	0	Median	0.7034	0.75752	7.3993	3	1	Plateau	444540000	264300000	180240000	0	0	0	30366000	16684000	13681000	211330000	130470000	80865000	202840000	117150000	85691000	5377	543	5078	33331;33332;33333;33334;33335;33336;33337;33338	45648;45649;45650;45651;45652;45653;45654;45655;45656;45657;45658	45652			10	
ATNMEYAVK	1	Unmodified	1025.4852	0.48518136	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	22.866	22.246	2	0.0002731	19676	160511_QHF_FH_JSI12i_1	96.143	19.464			0.81682	0.86426	54.226	3	2	Plateau	2.1682	1.7884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63612	0.61322	NaN	1	0	Median	1.1635	1.2181	NaN	1	1	Median	240520000	113220000	127300000	58076000	24115000	33960000	0	0	0	61519000	30500000	31019000	120930000	58607000	62320000	5378	2669	5079	33339;33340;33341;33342	45659;45660;45661;45662;45663	45661			5	
ATNMTVSAIR	0	Unmodified	1062.5492	0.5491786	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.862	28.99	2	0.0002539	24332	160511_QHF_FH_JSI11i_2	96.668	78.82			1.1133	1.1418	24.833	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.76845	0.94322	NaN	1	0	Median	1.1451	1.1418	NaN	1	0	Median	0.64836	0.69769	NaN	1	1	Median	117730000	65268000	52467000	0	0	0	31417000	17687000	13730000	60466000	29603000	30864000	25852000	17978000	7873400	5379	1240	5080	33343;33344;33345;33346	45664;45665;45666;45667	45666			4	
ATNNSLER	0	Unmodified	903.44101	0.44100836	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.83	4	4				1	1			2	1	4	3	6.0253	4.0908	2	0.0020854	3552	160511_QHF_FH_JSI12i_1	82.75	42.178			1.009	1.0425	12.084	9	2	Median	1.1345	0.94149	14.813	2	0	Median	0.79197	0.95209	NaN	1	0	Median	1.049	1.0153	16.018	4	1	Median	0.98365	1.0629	2.7424	2	1	Median	1390500000	686310000	704240000	297510000	126700000	170810000	292040000	151290000	140740000	403180000	197090000	206100000	397820000	211230000	186590000	5380	1573	5081	33347;33348;33349;33350;33351;33352;33353;33354;33355;33356	45668;45669;45670;45671;45672;45673;45674;45675;45676;45677	45673			10	
ATNPSEHTVILAVVSR	0	Unmodified	1692.9159	0.91588303	668	O95263	PDE8B	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	63.804	54.276	3	6.0918E-17	28777	160513_QHF_FH_JSI9Kac_6	139.88	133.98			1.4979	1.2877	11.967	3	2	Plateau	1.5113	1.304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0879	1.0725	NaN	1	1	Median	0.96644	1.0492	NaN	1	1	Median	75665000	33047000	42618000	38437000	15207000	23230000	0	0	0	25148000	11707000	13441000	12080000	6133200	5946300	5381	668	5082	33357;33358;33359	45678;45679;45680	45679			3	
ATNSMIDR	0	Unmodified	906.42292	0.42291545	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.4	0.49	3	2								1	1	1	2	11.904	11.482	2	0.036037	8830	160511_QHF_FH_JSI12i_2	40.352	17.332			1.0835	1.0067	16.876	5	0	Median	1.0835	0.97974	NaN	1	0	Median	0.75102	0.89813	NaN	1	0	Median	1.2563	1.2416	NaN	1	0	Median	1.0672	1.1608	20.144	2	0	Median	690000000	352810000	337190000	47245000	25066000	22180000	223470000	135380000	88088000	197360000	91297000	106070000	221920000	101070000	120850000	5382	1388	5083	33360;33361;33362;33363;33364	45681;45682	45681			2	
ATNTDLLLAYANLMLLTLSTR	0	Unmodified	2307.2508	0.25081832	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715	RANBP2;RGPD3;RGPD4;RGPD8	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		102.48	94.369	2;3	5.4209E-17	53958	160513_QHF_FH_JSI9Kac_6	129.43	107.96			1.3372	0.99799	23.094	3	1	Plateau	1.44	1.233	NaN	1	0	Median	1.3372	1.583	NaN	1	1	Median	1.0597	0.99799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	279640000	116110000	163530000	70796000	27387000	43409000	71774000	20137000	51637000	137070000	68589000	68481000	0	0	0	5383	1685;31;191	5084	33365;33366;33367	45683;45684;45685	45684			3	
ATNVVMNYSEIESK	1	Unmodified	1583.7501	0.75012283	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.4	6.05	2					2	1				3	1	1	58.832	52.692	2	0.00013779	47363	160511_QHF_FH_JSI11i_1	116.51	102.28			0.95128	1.0396	36.492	5	1	Median	NaN	NaN	NaN	0	0	Median	0.60079	0.71123	50.963	3	1	Plateau	1.0764	1.0537	NaN	1	0	Median	0.95128	0.99531	NaN	1	0	Median	498930000	281730000	217200000	0	0	0	7354200	3954400	3399700	255280000	145470000	109810000	236290000	132300000	103990000	5384	2558	5085	33368;33369;33370;33371;33372	45686;45687;45688;45689;45690	45686			5	
ATNVVMNYSEIESK	1	Oxidation (M)	1599.745	0.74503745	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	1	0		By MS/MS			13	0						1					1			51.425	42.078	2	0.023847	22232	160513_QHF_FH_JSI10Kac_3	57.836	23.458			0.65829	0.7372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65829	0.7372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1010600	702420	308210	0	0	0	1010600	702420	308210	0	0	0	0	0	0	5385	2558	5085	33373	45691	45691			1	
ATNWGSLLQDK	1	Acetyl (Protein N-term)	1273.6303	0.63026569	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.496	84.035	2	2.4192E-13	76524	160511_QHF_FH_JSI12i_1	89.047	19.449			1.0964	0.99833	10.535	4	0	Median	1.1884	0.96987	NaN	1	0	Median	0.79557	0.93363	NaN	1	0	Median	1.0515	1.0276	NaN	1	0	Median	1.1432	1.1869	NaN	1	0	Median	368890000	174210000	194670000	102510000	40755000	61758000	88227000	49347000	38880000	83226000	42451000	40775000	94921000	41661000	53260000	5386	1629	5086	33374;33375;33376;33377	45692;45693;45694;45695;45696;45697;45698;45699;45700;45701	45696			10	
ATPAQTPR	0	Unmodified	840.44537	0.44536545	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.86	5.49	3	2				1	1			1	1	1	4	7.2442	4.9006	2	0.005887	4455	160511_QHF_FH_JSI10i_1	64.265	32.31			0.93589	0.99365	9.5523	7	0	Median	1.3815	1.2067	NaN	1	0	Median	0.77451	0.93579	NaN	1	0	Median	0.95207	0.92132	NaN	1	0	Median	0.88028	0.93466	5.4281	4	0	Linear	1990800000	1059800000	931080000	57420000	25042000	32378000	651730000	378580000	273140000	528120000	275910000	252220000	753560000	380220000	373340000	5387	1409	5087	33378;33379;33380;33381;33382;33383;33384	45702;45703;45704;45705;45706;45707;45708;45709;45710	45708			9	
ATPEQYQILK	1	Unmodified	1189.6343	0.63428844	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.83	4	4	1			3	3			3	4	4	4	47.159	42.628	2	7.5304E-11	37990	160511_QHF_FH_JSI11i_1	143.73	110.47			0.85621	0.93621	14.718	15	4	Median	1.2194	1.0027	18.465	3	1	Median	0.81846	0.98142	7.0145	4	1	Median	0.86775	0.85196	16.967	4	1	Median	0.87571	0.94828	13.137	4	1	Median	8122700000	4112800000	4009900000	1644400000	761320000	883060000	2199800000	1201700000	998160000	2268400000	1214700000	1053700000	2010100000	935100000	1075000000	5388	1051	5088	33385;33386;33387;33388;33389;33390;33391;33392;33393;33394;33395;33396;33397;33398;33399	45711;45712;45713;45714;45715;45716;45717;45718;45719;45720;45721;45722;45723;45724;45725;45726;45727;45728;45729;45730;45731;45732;45733;45734;45735;45736;45737;45738	45711			28	
ATPGLQKFSK	2	Acetyl (K)	1117.6132	0.61315906	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		54.282	43.427	2	0.013206	25220	160513_QHF_FH_JSI11Kac_4	57.347	45.111			0.35461	0.34988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35461	0.34988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6513700	4651800	1861900	0	0	0	0	0	0	6513700	4651800	1861900	0	0	0	5389	1895	5089	33400	45739	45739	1898		1	
ATPLAVNSAASLWGPYK	1	Acetyl (Protein N-term)	1786.9254	0.92538508	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	101.29	101.15	2	1.1142E-40	89344	160511_QHF_FH_JSI9i_1	147.71	99.813			0.85735	0.84768	11.277	3	0	Median	1.2423	1.0136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85735	0.84768	NaN	1	0	Median	0.79796	0.82286	NaN	1	0	Median	443440000	226340000	217110000	136330000	61126000	75205000	0	0	0	135760000	72878000	62886000	171350000	92332000	79016000	5390	3862	5090	33401;33402;33403	45740;45741;45742;45743	45743			4	
ATPLSSTVTLSMSADVPLVVEYK	1	Unmodified	2407.2556	0.25562892	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	101.36	101.27	3	2.6521E-24	92011	160511_QHF_FH_JSI10i_1	162.39	151.4			0.87421	1.0342	11.837	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87421	1.0342	NaN	1	0	Median	0.94995	0.92091	NaN	1	0	Median	1.1109	1.1669	NaN	1	1	Median	503560000	264670000	238880000	0	0	0	299770000	155740000	144030000	80788000	41337000	39451000	122990000	67591000	55403000	5391	1010	5091	33404;33405;33406	45744;45745;45746	45745			3	
ATPMPSRPSTTPFIDK	1	Unmodified	1744.8818	0.8818057	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		48.911	48.118	3	0.00026799	39306	160511_QHF_FH_JSI9i_3	48.216	36.525			1.0025	0.88965	27.577	4	3	Median	0.99495	0.80796	NaN	1	0	Median	1.27	1.4578	NaN	1	1	Median	0.92782	0.88965	12.042	2	2	Median	NaN	NaN	NaN	0	0	Median	1515300000	708200000	807060000	373030000	248030000	125000000	527050000	160070000	366980000	615180000	300100000	315080000	0	0	0	5392	1298	5092	33407;33408;33409;33410	45747;45748;45749;45750	45750			4	
ATPMPSRPSTTPFIDK	1	Oxidation (M)	1760.8767	0.87672033	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			41.264	39.743	3	0.0039805	32455	160511_QHF_FH_JSI9i_3	52.522	41.578			0.94735	0.90795	1.3539	2	0	Median	1.1418	0.91669	NaN	1	0	Median	0.78599	0.8993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156490000	76297000	80195000	95883000	47213000	48671000	60609000	29084000	31524000	0	0	0	0	0	0	5393	1298	5092	33411;33412	45751;45752	45752		940	2	
ATPQALLLDALCLLLDILAPK	1	Unmodified	2261.3069	0.30687663	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.64	101.92	3	3.4393E-05	60362	160513_QHF_FH_JSI10Kac_6	113.26	103.28			1.0754	1.2736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0754	1.2736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23164000	13343000	9821200	0	0	0	23164000	13343000	9821200	0	0	0	0	0	0	5394	3777	5093	33413	45753	45753			1	
ATPSENLVPSSAR	0	Unmodified	1327.6732	0.67319314	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.4	6.05	2					2	1			1		2	2	42.805	33.445	2	1.7802E-05	29269	160511_QHF_FH_JSI9i_1	84.507	56.299			1.0048	1.0925	19.201	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2899	1.25	24.83	2	1	Median	1.0048	1.0925	NaN	1	0	Median	10575000	4668600	5906200	0	0	0	0	0	0	7366900	3253500	4113400	3207900	1415100	1792800	5395	3553	5094	33414;33415;33416;33417;33418	45754;45755;45756;45757;45758;45759	45758			6	
ATPSTYSGVFR	0	Unmodified	1184.5826	0.58258722	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.325	39.129	2	0.054328	33368	160511_QHF_FH_JSI12i_3	54.066	38.915			0.60204	0.61544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60204	0.61544	NaN	1	1	Median	15883000	9471700	6411500	0	0	0	0	0	0	0	0	0	15883000	9471700	6411500	5396	1628	5095	33419	45760	45760			1	
ATQADLMELDMAMEPDRK	1	Acetyl (Protein N-term)	2105.9432	0.94316169	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	89.492	89.183	2	1.8941E-11	80851	160511_QHF_FH_JSI10i_1	154.6	141.19			0.94363	1.029	16.679	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79925	0.91457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1141	1.1579	NaN	1	0	Median	41799000	18418000	23380000	0	0	0	13946000	10179000	3767600	8458300	0	8458300	19394000	8239600	11155000	5397	1422	5096	33420;33421;33422;33423	45761;45762;45763;45764;45765	45764			5	
ATQALVLAPTR	0	Unmodified	1139.6663	0.66625727	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.43	5	4	4			3	3	5	4	7	7	7	7	47.096	41.365	2	1.2034E-36	23126	160513_QHF_FH_JSI10Kac_4	202.56	123.44			0.97459	1.0458	17.863	28	5	Median	1.2653	1.0524	25.743	7	3	Median	0.87482	1.046	11.922	7	0	Median	0.97491	0.96955	21.396	7	1	Median	1.0129	1.1239	13.085	7	1	Median	18157000000	9000900000	9156200000	3976200000	1803800000	2172400000	4304000000	2323500000	1980500000	5844300000	2850200000	2994100000	4032500000	2023400000	2009100000	5398	1917	5097	33424;33425;33426;33427;33428;33429;33430;33431;33432;33433;33434;33435;33436;33437;33438;33439;33440;33441;33442;33443;33444;33445;33446;33447;33448;33449;33450;33451	45766;45767;45768;45769;45770;45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782;45783;45784;45785;45786;45787;45788;45789;45790;45791;45792;45793;45794;45795;45796;45797;45798;45799;45800;45801;45802;45803;45804;45805;45806;45807;45808;45809;45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820	45783			55	
ATQALVLAPTRELAQQIQK	1	Unmodified	2078.1848	0.18478766	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			72.516	71.054	3	1.6953E-09	58445	160511_QHF_FH_JSI9i_3	117.26	113.54			0.68531	0.6648	87.532	2	0	Median	1.5299	1.2345	NaN	1	0	Median	0.30698	0.358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127580000	67672000	59911000	84381000	37144000	47237000	43203000	30528000	12674000	0	0	0	0	0	0	5399	1917	5098	33452;33453	45821;45822;45823;45824	45824			4	
ATQDSDTVK	1	Unmodified	963.4509	0.45090434	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	5.1249	4.7573	2	5.0685E-08	2721	160511_QHF_FH_JSI11i_1	144.09	115.58			0.89691	0.9731	35.633	5	1	Median	1.6393	1.3533	46.639	2	1	Median	0.89691	1.0685	NaN	1	0	Median	0.8364	0.82223	NaN	1	0	Median	0.73076	0.76318	NaN	1	0	Median	661940000	313830000	348100000	133430000	46278000	87155000	189040000	92401000	96636000	174530000	82402000	92133000	164930000	92752000	72180000	5400	2906	5099	33454;33455;33456;33457;33458;33459	45825;45826;45827;45828;45829;45830;45831	45826			7	
ATQELIPIEDFITPLK	1	Unmodified	1827.003	0.002966698	4913	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.87	101.77	2;3	2.4386E-05	92353	160511_QHF_FH_JSI12i_1	84.403	77.086			0.98606	0.9573	12.453	7	0	Median	1.0494	0.89051	NaN	1	0	Median	0.7179	0.84642	17.412	2	0	Median	1.0547	1.0234	9.4453	2	0	Median	0.90266	0.93929	12.542	2	0	Median	703810000	397230000	306580000	69006000	34676000	34330000	229750000	149680000	80072000	187930000	97412000	90517000	217120000	115460000	101660000	5401	4913	5100	33460;33461;33462;33463;33464;33465;33466;33467	45832;45833;45834;45835;45836;45837;45838	45834			6	
ATQEWLEK	1	Unmodified	1003.4975	0.4974606	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.405	30.074	2	0.0095222	26771	160511_QHF_FH_JSI10i_1	64.42	43.12			0.35573	0.41502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35573	0.41502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106270000	77051000	29222000	0	0	0	106270000	77051000	29222000	0	0	0	0	0	0	5402	2587	5101	33468	45839	45839			1	
ATQFTGATGAIMTTETTK	1	Unmodified	1828.8877	0.88767894	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.217	53.555	2	9.2689E-06	48644	160511_QHF_FH_JSI12i_1	101.53	86.652			1.2218	1.2635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2218	1.2635	NaN	1	1	Median	72828000	31878000	40950000	0	0	0	0	0	0	0	0	0	72828000	31878000	40950000	5403	2493	5102	33469	45840	45840			1	
ATQLLEGLVQELQK	1	Unmodified	1568.8774	0.87737225	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	100.69	100.55	3	0.033261	88317	160511_QHF_FH_JSI11i_2	42.958	34.359			0.6735	0.73103	52.909	3	0	Median	NaN	NaN	NaN	0	0	Median	0.33284	0.41137	NaN	1	0	Median	1.218	1.1836	NaN	1	0	Median	0.6735	0.73103	NaN	1	0	Median	36728000	18573000	18155000	0	0	0	9750700	7924200	1826400	9183900	2892800	6291100	17794000	7756100	10038000	5404	1750	5103	33470;33471;33472	45841	45841			0	
ATQLQGDEEPSAPPTSTQAQQK	1	Unmodified	2311.0928	0.092797351	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.051	30.45	3	2.9107E-06	27279	160511_QHF_FH_JSI11i_1	68.42	59.005			0.94237	0.87923	9.7178	4	0	Median	0.96625	0.7984	NaN	1	0	Median	0.70667	0.82441	NaN	1	0	Median	0.99341	0.9753	NaN	1	0	Median	0.91908	0.93769	NaN	1	0	Median	205430000	104020000	101410000	56706000	27682000	29024000	47973000	24833000	23140000	44235000	19294000	24941000	56520000	32216000	24304000	5405	398	5104	33473;33474;33475;33476	45842;45843;45844;45845;45846	45842			4	
ATQMPEGGQGAPPMYQLYK	1	Unmodified	2065.9601	0.96013238	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	63.444	62.771	2;3	9.8823E-35	56939	160511_QHF_FH_JSI11i_1	232.5	216.36			0.99985	0.98997	7.4666	10	6	Median	1.1572	0.93579	3.9593	3	2	Median	0.87653	1.0188	12.179	2	1	Median	0.99703	0.97639	9.4333	2	1	Median	0.92857	0.99373	7.6654	3	2	Median	2586100000	1272400000	1313700000	744100000	361900000	382210000	456720000	233010000	223710000	486610000	240470000	246140000	898680000	437050000	461630000	5406	2094	5105	33477;33478;33479;33480;33481;33482;33483;33484;33485;33486	45847;45848;45849;45850;45851;45852;45853;45854;45855;45856;45857;45858;45859;45860;45861;45862;45863	45850			17	
ATQPETTEEVTDLK	1	Unmodified	1560.7519	0.75189697	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.048	36.436	2	1.5336E-14	32747	160511_QHF_FH_JSI11i_1	156.52	135.14			1.1024	1.1197	11.724	4	0	Median	1.3085	1.0704	NaN	1	0	Median	1.0261	1.1915	NaN	1	0	Median	1.1845	1.1711	NaN	1	0	Median	0.89872	0.9221	NaN	1	0	Median	758680000	357390000	401290000	185170000	74069000	111100000	198190000	95516000	102670000	202030000	93176000	108850000	173290000	94625000	78667000	5407	8	5106	33487;33488;33489;33490	45864;45865;45866;45867;45868;45869	45865			6	
ATQQQHDFTLTQTADGR	0	Unmodified	1916.8977	0.89766678	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.42	9	7	6				5	5	4	7	9	10	10	32.814	28.623	2;3	1.0949E-98	24093	160511_QHF_FH_JSI12i_2	262.82	246.04			1.0193	1.065	12.594	35	3	Median	1.2695	1.063	21.38	7	0	Median	0.89707	1.0723	12.195	9	1	Median	1.0281	1.065	7.5367	9	0	Median	0.99013	1.0784	6.7352	10	2	Median	5214400000	2596800000	2617600000	912750000	412870000	499880000	1071300000	578130000	493170000	1560800000	774720000	786040000	1669600000	831080000	838540000	5408	2094	5107	33491;33492;33493;33494;33495;33496;33497;33498;33499;33500;33501;33502;33503;33504;33505;33506;33507;33508;33509;33510;33511;33512;33513;33514;33515;33516;33517;33518;33519;33520;33521;33522;33523;33524;33525;33526	45870;45871;45872;45873;45874;45875;45876;45877;45878;45879;45880;45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922;45923;45924;45925;45926;45927;45928;45929;45930;45931;45932;45933	45879			62	
ATQSYLQEK	1	Unmodified	1066.5295	0.52948901	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	17.497	16.435	2	0.020579	14341	160511_QHF_FH_JSI12i_1	44.203	22.072			4.7239	3.8595	NaN	1	1	Median	4.7239	3.8595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15931000	4471600	11459000	15931000	4471600	11459000	0	0	0	0	0	0	0	0	0	5409	1676	5108	33527;33528	45934;45935	45934			2	
ATQVEPLLPGGATLLQAEEHGGLVR	0	Acetyl (Protein N-term)	2597.3813	0.38131522	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	101.23	101.14	3	3.0091E-23	89653	160511_QHF_FH_JSI10i_2	137.89	117.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5410	3132	5109	33529;33530;33531;33532;33533;33534	45936;45937;45938;45939;45940;45941	45941			6	
ATQVGEK	1	Unmodified	731.38137	0.38136821	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	4.0536	3.7147	2	0.017489	1894	160511_QHF_FH_JSI12i_1	62.659	30.704			0.79056	0.83317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79056	0.83317	NaN	1	1	Median	144010000	78611000	65398000	0	0	0	0	0	0	0	0	0	144010000	78611000	65398000	5411	1710	5110	33535	45942	45942			1	
ATSATSPHAPGFPAEGR	0	Acetyl (Protein N-term)	1694.8012	0.8012472	5009	Q9NUP7	TRMT13	tRNA:m(4)X modification enzyme TRM13 homolog	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				44.3	43.078	2	1.4694E-06	38175	160511_QHF_FH_JSI9i_1	112.44	98.279			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5412	5009	5111	33536	45943	45943			1	
ATSAVVITSTSGDSIVSTSMPR	0	Unmodified	2166.0838	0.083812569	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				61.685	60.726	3	0.059283	53802	160511_QHF_FH_JSI9i_2	13.872	4.8254			3.5166	2.9814	NaN	1	0	Median	3.5166	2.9814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162930000	46351000	116570000	162930000	46351000	116570000	0	0	0	0	0	0	0	0	0	5413	3812	5112	33537	45944	45944			1	
ATSEIFHSQSFLATGSNLR	0	Unmodified	2065.0229	0.022867292	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			71.564	64.026	3	4.0789E-14	35154	160513_QHF_FH_JSI10Kac_6	132.13	116.19			0.45808	0.54234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45808	0.54234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23184000	13337000	9846300	0	0	0	23184000	13337000	9846300	0	0	0	0	0	0	5414	5192	5113	33538	45945	45945			1	
ATSEIFHSQSFLATGSNLRK	1	Unmodified	2193.1178	0.11783031	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			12.8	5.63			1						3	1	3			62.966	56.227	3;4	1.3032E-08	29756	160513_QHF_FH_JSI9Kac_6	102.07	89.354			0.77217	0.91742	23.913	4	2	Median	1.3733	1.2006	NaN	1	0	Median	0.69262	0.82332	19.226	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118300000	68475000	49823000	36474000	18783000	17690000	81823000	49691000	32132000	0	0	0	0	0	0	5415	5192	5114	33539;33540;33541;33542	45946;45947;45948;45949;45950	45947			5	
ATSEVPGSQASPNPVPGDGLHR	0	Unmodified	2172.056	0.055958335	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.64	5	3	2				2			1	4	3	4	41.17	38.963	3	4.4946E-10	34994	160511_QHF_FH_JSI10i_1	107.25	98.304			0.91632	1.0265	18.979	12	4	Median	0.86653	0.71125	NaN	1	0	Median	0.89531	1.067	19.366	4	2	Median	1.0315	1.0354	3.8204	3	1	Plateau	0.84981	0.90929	23.293	4	1	Median	1054800000	546330000	508450000	90098000	57392000	32707000	360980000	191990000	168990000	358300000	169380000	188920000	245400000	127560000	117830000	5416	4094	5115	33543;33544;33545;33546;33547;33548;33549;33550;33551;33552;33553;33554	45951;45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968	45961			18	
ATSFLLALEPELEAR	0	Unmodified	1658.8879	0.88793694	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.46	2	8	3						3	3	4	5	4	99.111	97.558	2;3	3.7197E-30	88607	160511_QHF_FH_JSI11i_2	227.31	203.02			0.99251	1.142	21.144	16	3	Plateau	1.2734	1.0723	15.081	3	1	Plateau	0.86006	1.0217	18.823	4	1	Median	0.99494	1.0011	27.124	5	1	Median	1.1621	1.2413	14.026	4	0	Median	3494600000	1700700000	1793900000	568530000	260520000	308000000	726890000	402110000	324780000	1066800000	512460000	554290000	1132400000	525600000	606810000	5417	816	5116	33555;33556;33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567;33568;33569;33570	45969;45970;45971;45972;45973;45974;45975;45976;45977;45978;45979;45980;45981;45982;45983;45984;45985;45986;45987;45988	45977			20	
ATSHVGEIEQELALAR	0	Unmodified	1722.8901	0.89006221	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	60.143	59.663	2;3	3.5294E-07	51847	160511_QHF_FH_JSI11i_2	148.96	134.4			1.0539	1.0827	35.258	6	3	Median	1.9819	1.734	NaN	1	0	Median	0.79304	0.98375	NaN	1	0	Median	1.0539	1.009	23.521	2	1	Median	1.0152	1.0448	57.199	2	2	Median	263230000	136110000	127120000	15268000	9267900	6000400	23989000	12111000	11878000	57573000	25226000	32346000	166400000	89500000	76897000	5418	1360	5117	33571;33572;33573;33574;33575;33576;33577;33578	45989;45990;45991;45992;45993;45994;45995;45996;45997;45998	45993			10	
ATSIDPNTYITWIDK	1	Unmodified	1736.8621	0.86211612	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.96	7								1	1	2	1	4	90.866	90.503	2;3	5.1126E-10	82288	160511_QHF_FH_JSI10i_1	174.68	155.55			0.93478	0.96082	24.338	6	1	Median	1.1437	0.92609	NaN	1	0	Median	1.121	1.2698	34.22	2	1	Median	1.017	0.99749	NaN	1	0	Median	0.8062	0.84153	0.40005	2	0	Median	427050000	225100000	201950000	50713000	24523000	26190000	135000000	68187000	66811000	100510000	51400000	49115000	140820000	80986000	59834000	5419	2517	5118	33579;33580;33581;33582;33583;33584;33585;33586	45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017	46012			19	
ATSILEFYR	0	Unmodified	1098.571	0.5709599	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.23		2	1					3	3	4	1	2	2	72.057	64.517	2	2.4806E-06	34279	160513_QHF_FH_JSI9Kac_6	132.76	104.54			1.0599	1.0391	10.991	8	2	Median	1.1722	1.0062	12.415	4	2	Median	0.89178	1.0785	NaN	1	0	Median	1.0317	1.0145	NaN	1	0	Median	1.0108	1.1183	8.5245	2	0	Median	333030000	172990000	160040000	163710000	82767000	80938000	6453700	3645800	2807900	43917000	21921000	21997000	118950000	64656000	54297000	5420	919	5119	33587;33588;33589;33590;33591;33592;33593;33594;33595	46018;46019;46020;46021;46022;46023;46024;46025;46026;46027	46026			10	
ATSISTQLPDDPAK	1	Unmodified	1442.7253	0.72528829	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.977	43.34	2	3.5124E-06	39394	160511_QHF_FH_JSI12i_1	124.12	106.31			0.69564	0.71442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69564	0.71442	NaN	1	1	Median	54440000	30978000	23462000	0	0	0	0	0	0	0	0	0	54440000	30978000	23462000	5421	5348	5120	33596	46028	46028			1	
ATSITVTGSGSCR	0	Unmodified	1295.614	0.6139637	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8.8	6.37	2						3				2	3		18.809	18.552	2	2.0284E-09	11794	160513_QHF_FH_JSI11Kac_4	119.16	92.04			1.8943	2.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8943	2.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33187000	7807300	25380000	0	0	0	33187000	7807300	25380000	0	0	0	0	0	0	5422	2491	5121	33597;33598;33599;33600;33601	46029;46030;46031;46032;46033	46033			5	
ATSLAWHPTHPSTVAVGSK	1	Unmodified	1946.001	0.0010096381	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	40.866	39.975	3;4	7.2557E-10	32876	160511_QHF_FH_JSI9i_3	95.814	89.692			0.88369	0.9034	23.238	9	2	Median	1.3296	1.0701	6.4056	2	0	Median	1.0505	1.2017	18.237	3	2	Median	0.87211	0.82522	1.6583	2	0	Median	0.69551	0.6893	13.209	2	0	Median	1020100000	527190000	492930000	250350000	105800000	144550000	271410000	149740000	121670000	345750000	178220000	167520000	152610000	93426000	59189000	5423	3826	5122	33602;33603;33604;33605;33606;33607;33608;33609;33610	46034;46035;46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049	46045			16	
ATSLEKQHK	2	Acetyl (K)	1082.572	0.57202253	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		10.952	3.3331	2;3	0.011976	4477	160513_QHF_FH_JSI11Kac_4	69.825	34.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1845000	1845000	0	0	0	0	0	0	0	1845000	1845000	0	0	0	0	5424	3563	5123	33611;33612	46050;46051	46050	2886		2	
ATSLGSNTYNR	0	Acetyl (Protein N-term)	1224.5735	0.57347909	5060	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	32.287	31.711	2	7.731E-05	28513	160511_QHF_FH_JSI12i_1	46.022	35.388			0.43872	0.45672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43872	0.45672	NaN	1	0	Median	94574000	66651000	27924000	0	0	0	0	0	0	0	0	0	94574000	66651000	27924000	5425	5060	5124	33613	46052	46052			1	
ATSNLTQENMPTLFVESVLEVHGK	1	Unmodified	2643.3214	0.32141708	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.43	101.45	3	1.3723E-08	88125	160511_QHF_FH_JSI12i_3	87.511	79.21			0.91641	0.93687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91641	0.93687	NaN	1	1	Median	258530000	155020000	103510000	0	0	0	0	0	0	0	0	0	258530000	155020000	103510000	5426	2454	5125	33614	46053	46053			1	
ATSNVFAMFDQSQIQEFK	1	Unmodified	2089.9779	0.97789093	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.04	5.26	9	8	4						4	5	6	6	8	97.234	95.999	2;3	2.4714E-191	46574	160513_QHF_FH_JSI10Kac_6	315.13	290.2			1.0733	1.0514	10.661	22	2	Median	1.1845	1.0086	4.8557	5	0	Median	0.82138	0.95239	18.259	5	0	Median	1.0424	1.0189	11.829	6	1	Median	1.039	1.0506	3.3164	6	1	Linear	2570100000	1276500000	1293600000	526060000	224780000	301290000	715470000	424300000	291170000	812360000	361990000	450370000	516250000	265440000	250820000	5427	223;1151	5126	33615;33616;33617;33618;33619;33620;33621;33622;33623;33624;33625;33626;33627;33628;33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639	46054;46055;46056;46057;46058;46059;46060;46061;46062;46063;46064;46065;46066;46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083;46084;46085;46086;46087;46088;46089;46090;46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103;46104;46105	46105			52	
ATSNVFAMFDQSQIQEFK	1	Oxidation (M)	2105.9728	0.97280556	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	1	0			By MS/MS		15	0								1				1		83.844	73.317	3	5.7295E-05	38705	160513_QHF_FH_JSI11Kac_5	75.239	66.745			0.92261	0.91723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92261	0.91723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4541300	1790900	2750400	0	0	0	0	0	0	4541300	1790900	2750400	0	0	0	5428	223;1151	5126	33640	46106	46106		95	1	
ATSSHPNSTSLK	1	Unmodified	1228.6048	0.60477922	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.95		9	6					6	1	6	5	5	6	6.8297	3.6886	2;3	3.0848E-31	3666	160511_QHF_FH_JSI12i_3	199.08	179.09			0.88057	0.92416	33.545	22	8	Median	1.2602	1.0722	14.893	6	2	Median	0.76038	0.93552	44.27	5	1	Median	0.82233	0.78725	12.705	5	2	Linear	0.75358	0.76384	45.172	6	3	Median	2672000000	1333400000	1338600000	338900000	143480000	195430000	355720000	154370000	201340000	621840000	335790000	286050000	1355500000	699720000	655820000	5429	2525	5127	33641;33642;33643;33644;33645;33646;33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661;33662	46107;46108;46109;46110;46111;46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129;46130;46131;46132	46129			26	
ATSSSSGSLSATGR	0	Unmodified	1267.6004	0.60042213	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	4	2	2	10.521	7.8265	2	3.1372E-40	7060	160511_QHF_FH_JSI12i_1	206.36	193.73			0.88695	0.929	10.886	9	2	Median	1.0796	0.8862	NaN	1	0	Median	0.77412	0.93005	6.0542	4	2	Median	1.0568	1.0373	15.79	2	0	Median	0.96535	1.0315	14.796	2	0	Median	888100000	433110000	454990000	170360000	70867000	99497000	264810000	143460000	121350000	215810000	108600000	107210000	237130000	110190000	126940000	5430	2207	5128	33663;33664;33665;33666;33667;33668;33669;33670;33671	46133;46134;46135;46136;46137;46138;46139;46140;46141;46142;46143	46136			11	
ATSTATSGFAGAIGQK	1	Unmodified	1466.7365	0.73652168	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	5.88	2	4	1			3	4			1	4	5	4	44.316	39.024	2;3	3.2172E-41	33947	160511_QHF_FH_JSI9i_2	210.91	196.22			0.91853	0.96041	22.039	14	2	Median	1.3211	1.1274	NaN	1	0	Median	0.70392	0.83579	22.182	4	1	Median	0.96889	0.95334	13.297	5	1	Median	0.89537	0.99823	31.7	4	0	Median	463620000	247680000	215940000	37590000	18627000	18963000	165300000	96594000	68706000	186200000	100060000	86131000	74536000	32400000	42136000	5431	1747	5129	33672;33673;33674;33675;33676;33677;33678;33679;33680;33681;33682;33683;33684;33685	46144;46145;46146;46147;46148;46149;46150;46151;46152;46153;46154;46155;46156;46157;46158;46159;46160;46161;46162;46163;46164	46155			20	
ATSTSPNSQSSK	1	Unmodified	1193.5524	0.5524093	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	4.6398	0.84549	2	1.0914E-11	2268	160511_QHF_FH_JSI10i_1	180.07	147.23			0.90215	0.92649	8.3125	6	0	Median	1.0727	0.87517	NaN	1	0	Median	0.76998	0.87933	10.655	2	0	Median	0.92364	0.90535	NaN	1	0	Median	0.93641	0.99384	6.6589	2	0	Median	329650000	177090000	152560000	34582000	16921000	17661000	129760000	76135000	53621000	1201400	744330	457060	164110000	83287000	80822000	5432	5646	5130	33686;33687;33688;33689;33690;33691;33692	46165;46166;46167;46168;46169;46170;46171	46169			7	
ATSTTELPPEYLTSPLSQQSQLPPK	1	Unmodified	2712.3858	0.38579147	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.952	82.59	3	0.046171	75307	160511_QHF_FH_JSI11i_1	18.56	11.284			1.4075	1.3443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4075	1.3443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9987100	2650800	7336300	0	0	0	0	0	0	9987100	2650800	7336300	0	0	0	5433	225	5131	33693	46172	46172			1	
ATSVYLVQK	1	Unmodified	1007.5651	0.56514624	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		41.822	31.809	2	0.0015221	19280	160513_QHF_FH_JSI11Kac_4	84.743	65.967			0.91626	0.98133	2.4468	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82396	0.96449	NaN	1	0	Median	1.0189	0.99845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12328000	5843700	6484500	0	0	0	5231800	2373900	2857800	7096400	3469800	3626700	0	0	0	5434	3465	5132	33694;33695	46173	46173			1	
ATSYTLVESFSGK	1	Unmodified	1388.6824	0.68236084	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.475	60.161	2	0.00045489	51687	160511_QHF_FH_JSI12i_2	91.937	78.346			2.0627	2.333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0627	2.333	NaN	1	1	Median	10786000	1791000	8994600	0	0	0	0	0	0	0	0	0	10786000	1791000	8994600	5435	1543	5133	33696	46174	46174			1	
ATTAAPAGGAR	0	Acetyl (Protein N-term)	984.49886	0.49885759	4593	Q9GZM5	YIPF3	Protein YIPF3;Protein YIPF3, 36 kDa form III	yes	yes	0	1	0	0			By MS/MS	By MS/MS	11	0				2								1	1	18.868	11.477	2	0.049244	5810	160513_QHF_FH_JSI12Kacf_1	40.002	31.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5436	4593	5134	33697;33698	46175;46176	46175			2	
ATTADGSSILDR	0	Unmodified	1205.5888	0.58879481	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0						6				2	1	2	1	28.18	14.873	2	1.9234E-06	6090	160513_QHF_FH_JSI9Kac_3	108.9	76.548			1.1747	1.0589	16.088	4	4	Median	1.1837	0.92515	4.7464	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2077	1.1719	NaN	1	1	Median	1.1425	1.2542	NaN	1	1	Median	48352000	22058000	26293000	31420000	13576000	17843000	0	0	0	9653400	4538100	5115300	7278500	3943700	3334800	5437	4411	5135	33699;33700;33701;33702;33703;33704	46177;46178;46179;46180;46181;46182	46179			6	
ATTAHDLSGK	1	Unmodified	999.49852	0.49852324	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	6.88	6.2783	2	0.021658	4171	160511_QHF_FH_JSI12i_2	43.308	24.214			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5438	1857	5136	33705	46183	46183			1	
ATTATMATSGSAR	0	Acetyl (Protein N-term);Oxidation (M)	1282.5823	0.58232922	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.16	5			4	2					2	3	3	3	19.929	15.341	2	4.339E-11	22373	160511_QHF_FH_JSI9i_1	115.57	96.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5439	1481	5137	33706;33707;33708;33709;33710;33711;33712;33713;33714;33715;33716	46184;46185;46186;46187;46188;46189;46190;46191;46192;46193;46194	46190		1156	11	
ATTATMATSGSAR	0	Acetyl (Protein N-term)	1266.5874	0.5874146	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	7.4	4.84	1	1		2	1						2	1	2	29.902	25.157	2	9.9688E-07	10570	160513_QHF_FH_JSI11Kac_1	133.81	104.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5440	1481	5137	33717;33718;33719;33720;33721	46195;46196;46197;46198;46199	46198			5	
ATTATMATSGSARK	1	Acetyl (Protein N-term)	1394.6824	0.68237762	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	3	2	1	19.798	19.215	2	8.4916E-53	16478	160511_QHF_FH_JSI10i_1	115	110.55			0.89541	0.98943	128	6	4	Median	0.49733	0.40537	243.73	2	2	Median	0.9387	1.1184	NaN	1	0	Median	0.58426	0.57053	118.77	2	2	Median	0.85412	0.87535	NaN	1	0	Median	849700000	412330000	437380000	199950000	87548000	112400000	243070000	105990000	137080000	219440000	123000000	96439000	187250000	95788000	91459000	5441	1481	5138	33722;33723;33724;33725;33726;33727;33728;33729	46200;46201;46202;46203;46204;46205;46206;46207;46208;46209	46205			10	
ATTATMATSGSARK	1	Acetyl (Protein N-term);Oxidation (M)	1410.6773	0.67729224	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	19.815	19.183	2	3.798E-05	16705	160511_QHF_FH_JSI12i_1	56.205	35.901			0.97325	1.0559	112.02	2	0	Median	NaN	NaN	NaN	0	0	Median	2.0185	2.3314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46928	0.4782	NaN	1	0	Median	68440000	40907000	27533000	8651500	8651500	0	27210000	10837000	16373000	0	0	0	32578000	21418000	11160000	5442	1481	5138	33730;33731;33732;33733;33734;33735	46210;46211;46212;46213;46214;46215	46211		1156	6	
ATTGAEETLMHDQVKPSSSK	2	Unmodified	2116.0106	0.010647626	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	29.707	29.2	4	3.1365E-11	24465	160511_QHF_FH_JSI12i_3	123.43	115.61			0.76829	0.78999	39.179	4	2	Median	0.74476	0.6439	NaN	1	0	Median	0.79257	0.96923	NaN	1	0	Median	1.2852	1.2126	NaN	1	1	Median	0.50746	0.50897	NaN	1	1	Median	210740000	110660000	100070000	27119000	10004000	17115000	32682000	14863000	17819000	60007000	23424000	36583000	90927000	62370000	28556000	5443	4936	5139	33736;33737;33738;33739	46216;46217;46218;46219;46220	46220			5	
ATTGTPTADRGDAAATDDPAAR	0	Acetyl (Protein N-term)	2142.9778	0.97776759	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	29.38	28.781	2;3	1.9382E-07	25728	160511_QHF_FH_JSI12i_1	82.36	73.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5444	3308	5140	33740;33741;33742;33743;33744;33745;33746;33747	46221;46222;46223;46224;46225;46226;46227;46228;46229;46230	46225			10	
ATTGTQTLLSSGTR	0	Unmodified	1392.7209	0.72087161	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	2	3	1	30.453	30.077	2	1.7815E-10	27101	160511_QHF_FH_JSI12i_1	153.74	134.99			1.0375	0.95277	21.152	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0375	1.2267	NaN	1	1	Median	0.84705	0.8175	NaN	1	0	Median	1.0541	1.1104	NaN	1	0	Median	132770000	66652000	66119000	0	0	0	45857000	23471000	22385000	46077000	23461000	22616000	40837000	19719000	21118000	5445	3436	5141	33748;33749;33750;33751;33752;33753;33754	46231;46232;46233;46234;46235;46236;46237;46238;46239	46234			9	
ATTHEIMGPK	1	Unmodified	1083.5383	0.53827956	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	2	3	12.026	11.868	2;3	4.2174E-06	8995	160511_QHF_FH_JSI12i_3	161.92	105.9			1.0994	1.1004	33.312	5	1	Median	NaN	NaN	NaN	0	0	Median	0.62933	0.78948	NaN	1	0	Median	1.0117	1.0201	10.724	2	0	Median	1.6267	1.6174	17.417	2	1	Median	603620000	258470000	345150000	0	0	0	106650000	62913000	43740000	300010000	112080000	187940000	196950000	83482000	113470000	5446	2425	5142	33755;33756;33757;33758;33759;33760;33761	46240;46241;46242;46243;46244;46245;46246;46247;46248;46249	46248			10	
ATTITSVLPK	1	Unmodified	1029.607	0.60701105	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	5.88	4	4	4			4	3	2		4	6	6	5	54.717	49.874	2	3.667E-14	44729	160511_QHF_FH_JSI10i_1	161.92	108.75			0.972	0.98407	16.052	21	1	Median	1.2032	1.0112	18.695	4	0	Median	0.83742	0.98664	25.59	6	1	Median	1.0194	1.0162	8.587	6	0	Median	0.88867	0.94737	5.0243	5	0	Median	5927200000	2999900000	2927300000	1333500000	618790000	714720000	1444000000	847930000	596070000	1837800000	875770000	962010000	1311900000	657430000	654520000	5447	1372	5143	33762;33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781;33782	46250;46251;46252;46253;46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266;46267;46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289	46267			39	
ATTITSVLPKPALVASR	1	Acetyl (K)	1766.0302	0.030184502	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.655	74.138	2	7.5148E-16	39075	160513_QHF_FH_JSI11Kac_5	134.99	116.72			0.5962	0.58164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5962	0.58164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7236900	4365200	2871700	0	0	0	0	0	0	7236900	4365200	2871700	0	0	0	5448	1372	5144	33783	46290;46291	46291	1309		2	
ATTKPPPAK	2	Unmodified	909.52837	0.5283668	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.88	0.331		1	7							2	2	2	2	5.0463	4.8385	2;3	0.0039039	2514	160511_QHF_FH_JSI12i_3	44.318	30.94			0.84329	0.87964	25.015	8	0	Median	0.75675	0.63634	17.379	2	0	Median	0.84158	0.98994	17.826	2	0	Median	1.1334	1.0843	0.92707	2	0	Median	0.76831	0.78373	17.446	2	0	Median	4775100000	2533900000	2241200000	501170000	253120000	248050000	388720000	199690000	189030000	1467800000	700880000	766910000	2417400000	1380200000	1037200000	5449	2586	5145	33784;33785;33786;33787;33788;33789;33790;33791	46292;46293;46294;46295;46296;46297;46298;46299;46300;46301	46299			10	
ATTKPPPAKK	3	Unmodified	1037.6233	0.62332982	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	4.6195	4.3248	2;3	0.0018095	2123	160511_QHF_FH_JSI9i_3	65.5	38.714			0.8021	0.76174	11.068	2	2	Median	0.89559	0.70439	NaN	1	1	Median	0.71837	0.82375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1082800000	653540000	429300000	495830000	250140000	245690000	516790000	333180000	183610000	0	0	0	70215000	70215000	0	5450	2586	5146	33792;33793;33794;33795	46302;46303;46304;46305	46304			4	
ATTLPTDFNYNVDTLVQLHLK	1	Unmodified	2402.2482	0.24817578	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		5								2	1	1	1	100.78	100.67	3	9.2442E-10	88464	160511_QHF_FH_JSI9i_2	106.73	98.344			0.86785	0.92869	32.277	5	2	Median	0.96483	0.85258	15.122	2	2	Median	0.36169	0.44633	NaN	1	0	Median	0.90651	0.92869	NaN	1	0	Median	0.8547	0.94295	NaN	1	0	Median	254630000	130180000	124450000	63411000	28027000	35384000	19094000	11463000	7631300	97366000	55057000	42309000	74763000	35637000	39126000	5451	2594	5147	33796;33797;33798;33799;33800	46306;46307;46308;46309	46307			4	
ATTLPTDFNYNVDTLVQLHLKPGTR	1	Unmodified	2813.4712	0.47119286	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			94.494	93.522	4	2.0015E-06	77819	160511_QHF_FH_JSI10i_3	59.356	52.481			1.3345	1.3011	58.718	2	1	Median	2.2826	1.9708	NaN	1	1	Median	0.78016	0.85901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35383000	16986000	18397000	5763100	1000900	4762100	29620000	15985000	13635000	0	0	0	0	0	0	5452	2594	5148	33801;33802	46310;46311;46312	46310			3	
ATTLSNAVSSLASTGLSLTK	1	Unmodified	1921.0368	0.036786022	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							4	2	2	2	100.85	100.77	2;3	0	89798	160511_QHF_FH_JSI11i_3	440.82	409.63			0.85676	0.87489	25.162	10	5	Median	1.0468	0.88542	30.408	4	2	Median	0.58385	0.68368	38.109	2	1	Median	0.9598	0.92038	20.612	2	1	Median	0.85676	0.86703	5.0629	2	1	Median	1823900000	1012200000	811710000	240700000	136940000	103770000	428650000	259400000	169250000	425530000	199770000	225760000	729060000	416120000	312930000	5453	2425	5149	33803;33804;33805;33806;33807;33808;33809;33810;33811;33812	46313;46314;46315;46316;46317;46318;46319;46320;46321;46322;46323;46324;46325;46326;46327	46314			15	
ATTPADGEEPAPEAEALAAAR	0	Unmodified	2036.9651	0.96507764	4233	Q96S44	TP53RK	TP53-regulating kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.498	54.839	2	6.2647E-36	48725	160511_QHF_FH_JSI9i_1	185.67	177.53			1.1793	1.1158	13.875	4	0	Median	1.3121	1.1203	NaN	1	0	Median	0.82215	0.95909	NaN	1	0	Median	1.4071	1.3459	NaN	1	0	Median	1.0599	1.1113	NaN	1	0	Median	201910000	97345000	104570000	65422000	29758000	35664000	40344000	20768000	19576000	47422000	19734000	27688000	48722000	27086000	21637000	5454	4233	5150	33813;33814;33815;33816	46328;46329;46330;46331;46332;46333;46334;46335	46335			8	
ATTPASTANSDVATIPTDTPLK	1	Unmodified	2171.0958	0.095757464	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	4									2		2		60.469	59.813	2	3.7831E-22	54288	160511_QHF_FH_JSI11i_1	149	128.34			1.0072	0.97833	30.749	3	2	Median	1.3342	1.0818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79418	0.77145	33.6	2	2	Median	NaN	NaN	NaN	0	0	Median	53186000	27605000	25581000	20836000	9779700	11056000	0	0	0	32350000	17825000	14525000	0	0	0	5455	404	5151	33817;33818;33819;33820	46336;46337;46338;46339	46336			4	
ATTPLYHGFK	1	Unmodified	1133.5869	0.58694431	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.348	30.283	2	0.0020826	25542	160511_QHF_FH_JSI12i_3	68.625	54.906			1.1072	1.1016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1072	1.1016	NaN	1	0	Median	42921000	22978000	19943000	0	0	0	0	0	0	0	0	0	42921000	22978000	19943000	5456	2947	5152	33821	46340	46340			1	
ATTPVIMVGPGTGVAPFIGFIQER	0	Unmodified	2457.309	0.3090019	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7	6.38		3	3						3	3	2	2	2	100.19	97.428	3	5.5905E-22	49681	160513_QHF_FH_JSI11Kac_6	124.81	112.5			1.1182	1.1372	17.855	9	0	Median	1.381	1.1372	6.9316	3	0	Median	0.99718	1.1612	11.491	2	0	Median	0.93875	0.92052	37.235	2	0	Median	1.0066	1.0746	10.645	2	0	Median	3831600000	1854200000	1977500000	899460000	385620000	513850000	675410000	340220000	335190000	682280000	350300000	331980000	1574500000	778030000	796450000	5457	1100	5153	33822;33823;33824;33825;33826;33827;33828;33829;33830	46341;46342;46343;46344	46341			3	
ATTSTNWILESQNINELK	1	Unmodified	2061.0378	0.037848654	515	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.031	78.853	2	1.2314E-23	68152	160511_QHF_FH_JSI12i_2	138.42	124.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5458	515	5154	33831	46345	46345			1	
ATTVPDFQETRPR	0	Unmodified	1516.7634	0.76340513	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			34.913	33.492	3	0.0053864	28016	160511_QHF_FH_JSI10i_3	39.947	32.577			0.80322	0.92888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80322	0.92888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58520000	29800000	28720000	0	0	0	58520000	29800000	28720000	0	0	0	0	0	0	5459	4944	5155	33832	46346	46346			1	
ATVAAFAASEGHSHPR	0	Unmodified	1607.7805	0.78045218	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			23.581	22.305	3;4	1.5922E-07	17951	160511_QHF_FH_JSI9i_3	111.78	107.06			1.0428	0.92143	12.115	4	1	Median	1.1137	0.88951	0.81742	2	0	Median	0.89433	1.0442	13.517	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213810000	102850000	110960000	142720000	66852000	75872000	71085000	35996000	35089000	0	0	0	0	0	0	5460	5010	5156	33833;33834;33835;33836	46347;46348;46349;46350;46351;46352;46353;46354;46355	46352			9	
ATVASSTQK	1	Unmodified	891.46616	0.46616048	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	5.73	4	1			2	4				2	4	3	2	6.6458	1.5722	2	5.2169E-06	2969	160511_QHF_FH_JSI10i_1	131.06	84.636			0.87951	1.0427	19.464	10	0	Median	1.4246	1.1791	NaN	1	0	Median	0.87951	1.0555	3.3505	4	0	Median	1.3573	1.3387	36.965	3	0	Plateau	0.88704	0.95487	1.6108	2	0	Median	2368500000	1101200000	1267200000	585440000	201290000	384150000	626120000	347140000	278980000	506370000	212880000	293500000	650520000	339930000	310590000	5461	5298	5157	33837;33838;33839;33840;33841;33842;33843;33844;33845;33846;33847	46356;46357;46358;46359;46360;46361;46362;46363;46364	46360			9	
ATVATENNK	1	Unmodified	946.47197	0.47197413	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.4538	5.1299	2	5.4287E-08	3052	160511_QHF_FH_JSI11i_1	143.28	124.91			1.0677	0.96772	25.873	4	2	Median	1.121	0.93469	NaN	1	0	Median	0.58287	0.67569	NaN	1	1	Median	1.017	1.0019	NaN	1	0	Median	1.2416	1.2643	NaN	1	1	Median	492780000	248860000	243920000	97278000	47210000	50068000	168090000	99451000	68636000	114580000	52577000	62001000	112840000	49625000	63215000	5462	641	5158	33848;33849;33850;33851	46365;46366;46367;46368	46365			4	
ATVAVLSFILSSAAK	1	Unmodified	1476.8552	0.85518025	4624	Q9H0A8	COMMD4	COMM domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	3	4	98.966	94.439	2;3	4.4841E-24	49489	160513_QHF_FH_JSI11Kac_6	148.52	135.12			1.0058	1.0271	25.347	15	0	Median	1.1897	0.99778	27.811	4	0	Median	0.77857	0.91248	21.044	4	0	Median	1.0739	1.0271	24.167	3	0	Plateau	0.93135	1.0338	31.336	4	0	Median	2602100000	1252200000	1349800000	510120000	218830000	291290000	391150000	207140000	184010000	1017600000	523620000	493970000	683210000	302660000	380560000	5463	4624	5159	33852;33853;33854;33855;33856;33857;33858;33859;33860;33861;33862;33863;33864;33865;33866	46369;46370;46371;46372;46373;46374;46375;46376;46377;46378;46379;46380;46381;46382;46383;46384;46385;46386;46387;46388	46372			20	
ATVDMLQAEGGR	0	Unmodified	1246.5976	0.59758535	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.892	37.676	2	0.006592	33303	160511_QHF_FH_JSI9i_1	61.213	31.403			1.4103	1.1418	NaN	1	1	Median	1.4103	1.1418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49077000	17009000	32069000	49077000	17009000	32069000	0	0	0	0	0	0	0	0	0	5464	5458	5160	33867	46389	46389			1	
ATVECVK	1	Unmodified	805.40039	0.4003891	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	9.9192	9.6747	2	0.037218	7402	160511_QHF_FH_JSI11i_1	48.756	31.061			0.87484	1.0341	19.691	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87484	1.0341	NaN	1	0	Median	0.8737	0.84853	NaN	1	0	Median	1.1764	1.2581	NaN	1	0	Median	313550000	159450000	154110000	0	0	0	110310000	61760000	48553000	96582000	54024000	42558000	106660000	43662000	62994000	5465	543	5161	33868;33869;33870	46390;46391	46390			2	
ATVEDEK	1	Unmodified	790.37086	0.37086311	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	5.38	4	2		2	3	3				3	3	4	4	5.7451	1.3738	2	5.282E-17	2079	160513_QHF_FH_JSI12Kac_3	166.05	101.27			1.1812	1.1581	28.969	14	0	Median	0.95288	0.84003	22.715	3	0	Median	1.4483	1.6781	35.562	3	0	Median	1.2329	1.2138	16.007	4	0	Median	1.1577	1.2329	9.0799	4	0	Median	23283000000	10497000000	12786000000	5593100000	2750600000	2842500000	5344400000	2232000000	3112300000	6060200000	2513400000	3546800000	6285100000	3001100000	3284000000	5466	985	5162	33871;33872;33873;33874;33875;33876;33877;33878;33879;33880;33881;33882;33883;33884	46392;46393;46394;46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405;46406;46407;46408;46409;46410	46407			19	
ATVEELKEK	2	Acetyl (K)	1087.5761	0.57610486	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	41.806	32.87	2	0.00047708	18383	160513_QHF_FH_JSI12Kac_3	100.02	58.141			0.49884	0.52698	187.65	3	1	Plateau	NaN	NaN	NaN	0	0	Median	12.14	14.37	NaN	1	1	Median	0.59766	0.59054	NaN	1	0	Median	0.49884	0.52698	NaN	1	0	Median	23045000	14285000	8759900	0	0	0	3125000	107730	3017300	8288900	5941100	2347700	11631000	8236200	3394900	5467	660	5163	33885;33886;33887	46411;46412	46411	328		2	
ATVEPETTPTPNPPTTEEEK	1	Acetyl (Protein N-term)	2209.0274	0.027403127	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	1	0	0	By MS/MS	By matching		By MS/MS	1	0	4									2	1		1	51.5	50.74	2;3	6.768E-05	45898	160511_QHF_FH_JSI12i_1	71.241	56.554			1.2041	1.19	0.1334	2	0	Median	1.4442	1.1912	NaN	1	0	Median	1.0039	1.1889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134160000	61740000	72418000	56621000	24560000	32060000	61565000	37179000	24386000	0	0	0	15971000	0	15971000	5468	853	5164	33888;33889;33890;33891	46413;46414	46413			2	
ATVFLAMGK	1	Unmodified	936.51027	0.5102739	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	5.78			3					3	4	2	3	3	2	61.577	54.485	2	1.5455E-07	29532	160513_QHF_FH_JSI11Kac_6	143.12	112.94			0.84324	0.87918	16.127	10	1	Median	1.1106	0.93482	29.148	2	0	Median	0.84001	0.872	14.537	3	0	Plateau	1.0479	0.9986	21.966	3	1	Plateau	0.76689	0.86858	6.6297	2	0	Median	410560000	211820000	198740000	63805000	32525000	31280000	121280000	66105000	55172000	138610000	75265000	63340000	86872000	37922000	48950000	5469	2373	5165	33892;33893;33894;33895;33896;33897;33898;33899;33900;33901	46415;46416;46417;46418;46419;46420;46421;46422;46423;46424;46425;46426;46427;46428;46429	46419			15	
ATVGILITTIASK	1	Unmodified	1286.781	0.78095267	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			9						6	4	4	3	4	83.43	79.917	2;3	5.713E-41	74171	160511_QHF_FH_JSI11i_3	204.69	192.64			0.85468	0.80953	28.954	15	2	Median	0.95644	0.8124	13.966	4	0	Median	0.63033	0.73973	7.7099	4	0	Median	1.1634	1.0887	38.985	3	0	Median	0.95623	0.9918	36.927	4	2	Median	3148400000	1607000000	1541400000	913860000	428890000	484970000	961780000	535430000	426350000	687120000	355480000	331640000	585610000	287160000	298450000	5470	3914	5166	33902;33903;33904;33905;33906;33907;33908;33909;33910;33911;33912;33913;33914;33915;33916	46430;46431;46432;46433;46434;46435;46436;46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447;46448;46449;46450;46451;46452;46453;46454;46455;46456;46457	46430			27	
ATVLLSMSK	1	Unmodified	948.5314	0.53140327	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.22		4	2				2	4	5	4	4	5	4	52.185	45.794	2	4.463E-08	24278	160513_QHF_FH_JSI9Kac_6	133.57	96.873			0.99753	0.98596	8.7909	9	0	Median	1.2132	1.0261	8.9258	2	0	Median	0.8069	0.97125	2.1258	2	0	Median	0.96085	0.94954	10.23	3	0	Median	1.0287	1.13	3.8912	2	0	Median	1025500000	482040000	543480000	253200000	98920000	154280000	270190000	129430000	140770000	269340000	133370000	135970000	232780000	120320000	112460000	5471	2846	5167	33917;33918;33919;33920;33921;33922;33923;33924;33925;33926;33927;33928;33929;33930;33931;33932;33933	46458;46459;46460;46461;46462;46463;46464;46465;46466;46467;46468;46469;46470;46471;46472;46473	46469			16	
ATVLLSMSK	1	Oxidation (M)	964.52632	0.52631789	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	4.11		2				5	3	4	3	4	3	5	5	34.218	23.781	2	0.00043314	15755	160513_QHF_FH_JSI11Kac_5	93.178	72.231			1.0827	1.0473	20.3	15	1	Median	1.3588	1.0869	25.059	4	0	Median	0.78503	0.93696	14.679	3	0	Median	1.126	1.1166	9.0061	4	0	Median	1.0988	1.0045	27.314	4	1	Linear	181640000	94603000	87039000	49477000	21107000	28370000	41926000	24508000	17417000	65787000	34947000	30840000	24452000	14040000	10412000	5472	2846	5167	33934;33935;33936;33937;33938;33939;33940;33941;33942;33943;33944;33945;33946;33947;33948;33949;33950	46474;46475;46476;46477;46478;46479;46480;46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499	46494		2156	25	
ATVLTTER	0	Unmodified	889.4869	0.48689592	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.41	4	5					3			2	4	3	3	17.462	14.955	2	3.3349E-07	12416	160511_QHF_FH_JSI12i_2	153.78	98.338			0.89993	0.96009	11.491	12	2	Median	1.053	0.88666	11.637	2	0	Median	0.8498	1.0464	8.1884	4	2	Median	0.9682	0.95748	7.1315	3	0	Median	0.95057	1.0447	17.683	3	0	Plateau	2082200000	1086000000	996170000	347410000	168100000	179310000	654540000	357960000	296580000	521780000	279610000	242170000	558480000	280370000	278110000	5473	5426	5168	33951;33952;33953;33954;33955;33956;33957;33958;33959;33960;33961;33962	46500;46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514;46515;46516	46503			17	
ATVLTTERK	1	Unmodified	1017.5819	0.58185894	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.39	6.38		3	7					4	4	5	5	6	2	12.573	8.3295	2;3	7.2533E-06	7665	160511_QHF_FH_JSI9i_3	119.07	85.517			0.93953	0.97998	36.551	17	3	Median	1.2623	1.0677	18.898	5	1	Median	0.85724	0.97998	38.94	5	0	Median	1.0087	0.93066	55.81	5	2	Median	0.90593	0.98682	10.129	2	0	Median	1972400000	998890000	973510000	537840000	217110000	320730000	830680000	458020000	372670000	597510000	320250000	277260000	6356000	3506300	2849700	5474	5426	5169	33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980	46517;46518;46519;46520;46521;46522;46523;46524;46525;46526;46527;46528;46529;46530;46531;46532;46533	46528			17	
ATVMDVKPVDYR	1	Unmodified	1392.7071	0.7071358	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0.577	1	4	1							1		2	3	43.271	42.458	2;3	4.9762E-07	36299	160511_QHF_FH_JSI12i_2	138.25	115.51			0.84586	0.83627	14.642	6	1	Median	0.91065	0.77825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92142	0.91434	6.3715	2	0	Median	0.73632	0.80214	17.261	3	0	Median	593830000	295210000	298620000	153160000	78470000	74690000	0	0	0	93713000	44779000	48934000	346950000	171960000	174990000	5475	1293	5170	33981;33982;33983;33984;33985;33986	46534;46535;46536;46537;46538;46539;46540;46541;46542	46535			9	
ATVMLYDDGNK	1	Unmodified	1225.5649	0.56488824	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	39.779	37.441	2	1.8504E-05	33808	160511_QHF_FH_JSI12i_1	103.88	76.054			0.85834	0.9138	88.504	5	1	Median	0.80501	0.67056	NaN	1	0	Median	2.0133	2.3614	131.6	2	1	Median	0.936	0.90231	NaN	1	0	Median	0.85834	0.9138	NaN	1	0	Median	1110800000	552600000	558150000	204290000	104460000	99830000	320110000	180540000	139580000	332810000	144620000	188200000	253540000	122990000	130550000	5476	1710	5171	33987;33988;33989;33990;33991	46543;46544;46545;46546	46544			4	
ATVMLYDDGNK	1	Oxidation (M)	1241.5598	0.55980286	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	1	0		By MS/MS	By MS/MS		13	0						2					1	1		39.075	30.12	2	0.0045274	16636	160513_QHF_FH_JSI10Kac_3	60.102	44.44			0.87699	0.94508	3.066	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77744	0.92481	NaN	1	0	Median	0.9893	0.96579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6454700	3091000	3363700	0	0	0	2760700	1487900	1272900	3694000	1603100	2090800	0	0	0	5477	1710	5171	33992;33993	46547;46548;46549	46549		1388	3	
ATVMVMVK	1	Unmodified	877.47653	0.47653093	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.5	0.5								2	2	1	1	2		50.675	40.685	2	0.0022198	21627	160513_QHF_FH_JSI9Kac_6	91.9	76.679			0.92641	0.81863	5.2128	4	0	Linear	0.94296	0.82501	NaN	1	0	Median	0.68471	0.8123	NaN	1	0	Median	0.81533	0.79655	8.5344	2	0	Median	NaN	NaN	NaN	0	0	Median	60507000	35385000	25122000	28210000	17292000	10917000	3925200	2443500	1481700	28372000	15649000	12723000	0	0	0	5478	564	5172	33994;33995;33996;33997	46550;46551;46552;46553;46554	46554			5	
ATVNLLGEEK	1	Unmodified	1072.5764	0.57643921	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.37	4					1	4			1	2	3	3	47.303	41.706	2	5.1908E-07	37475	160511_QHF_FH_JSI11i_1	113.1	92.537			0.98304	0.92505	21.84	8	2	Median	1.0152	0.82735	NaN	1	0	Median	0.92146	1.0959	26.593	2	1	Median	1.0577	1.0337	15.226	2	0	Median	0.8679	0.92189	30.478	3	1	Median	2700900000	1464600000	1236400000	436440000	188160000	248270000	763600000	477100000	286510000	777550000	414140000	363400000	723360000	385180000	338170000	5479	2159	5173	33998;33999;34000;34001;34002;34003;34004;34005;34006	46555;46556;46557;46558;46559;46560;46561;46562;46563;46564;46565	46555			10	
ATVNSQEQK	1	Unmodified	1003.4934	0.49343786	1772;1587	P46734;P52564	MAP2K3;MAP2K6	Dual specificity mitogen-activated protein kinase kinase 3;Dual specificity mitogen-activated protein kinase kinase 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	5.0713	4.7813	2	2.6624E-31	2696	160511_QHF_FH_JSI10i_1	200.05	133.02			0.84286	0.94706	9.5473	5	0	Median	1.2474	1.0201	NaN	1	0	Median	0.80237	0.94706	NaN	1	0	Median	0.88883	0.87279	13.035	2	0	Median	0.84286	0.875	NaN	1	0	Median	1850500000	916630000	933860000	310800000	150490000	160310000	517820000	258940000	258880000	507200000	251180000	256020000	514670000	256010000	258660000	5480	1587;1772	5174	34007;34008;34009;34010;34011	46566;46567;46568;46569;46570;46571	46569			6	
ATVNTFGYIAK	1	Unmodified	1183.6237	0.62372375	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.55	6	1					3	2		2	2	4	4	55.583	50.33	2	3.9173E-25	27536	160513_QHF_FH_JSI11Kac_5	190.88	145.2			1.3288	1.3656	41.835	11	10	Median	1.3909	1.1543	40.915	2	2	Median	1.8259	2.1531	82.746	2	1	Median	1.3718	1.3547	38.628	4	4	Median	1.5288	1.5813	17.013	3	3	Plateau	1093500000	400240000	693270000	84701000	33382000	51319000	233750000	113280000	120470000	470510000	144080000	326430000	304540000	109500000	195050000	5481	542	5175	34012;34013;34014;34015;34016;34017;34018;34019;34020;34021;34022;34023	46572;46573;46574;46575;46576;46577;46578;46579;46580;46581;46582;46583;46584	46584			13	
ATVPKTEIR	1	Acetyl (K)	1055.5975	0.597509	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	2	1	38.61	29.457	2	0.00099733	16768	160513_QHF_FH_JSI10Kac_4	90.709	58.099			0.7027	0.77311	48.42	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82843	0.98582	10.833	2	0	Median	0.39462	0.385	2.8244	2	0	Median	0.7027	0.77311	NaN	1	0	Median	91836000	55439000	36397000	0	0	0	35025000	17871000	17154000	39784000	28100000	11684000	17027000	9468500	7558200	5482	2025	5176	34024;34025;34026;34027;34028	46585;46586;46587;46588;46589	46586	2066		5	
ATVPLQSNVIEAAPDMKR	1	Unmodified	1939.0197	0.01969617	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	59.741	59.607	3	5.0051E-06	51309	160511_QHF_FH_JSI12i_3	92.39	83.458			0.68978	0.65947	7.9623	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68253	0.62336	NaN	1	1	Median	0.69711	0.69766	NaN	1	1	Median	145410000	91688000	53717000	0	0	0	0	0	0	92277000	57591000	34686000	53128000	34097000	19032000	5483	486	5177	34029;34030	46590;46591	46591			2	
ATVQSVLLDSAGK	1	Unmodified	1287.7034	0.70343063	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	58.098	57.445	2	2.9092E-06	52122	160511_QHF_FH_JSI12i_1	121.96	80.241			0.29477	0.29511	111.75	4	4	Linear	2.3622	1.9455	NaN	1	1	Median	1.6132	1.9167	NaN	1	1	Median	0.27014	0.2656	NaN	1	1	Median	0.2837	0.29332	NaN	1	1	Median	608770000	351420000	257350000	71234000	27056000	44178000	174760000	78722000	96035000	192500000	132670000	59834000	170280000	112980000	57302000	5484	3073	5178	34031;34032;34033;34034;34035	46592;46593;46594;46595;46596	46593			5	
ATVSAPFGK	1	Unmodified	876.47052	0.47051757	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	32.627	31.304	2	0.0014736	26585	160511_QHF_FH_JSI11i_2	71.501	45.764			1.5489	1.7593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5489	1.7593	NaN	1	1	Median	48610000	23763000	24847000	0	0	0	0	0	0	0	0	0	48610000	23763000	24847000	5485	2636	5179	34036;34037	46597;46598	46598			2	
ATVSAPFGKFQGK	2	Acetyl (K)	1378.7245	0.72450043	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		71.194	60.332	2	0.0002969	32282	160513_QHF_FH_JSI11Kac_5	96.342	59.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2132200	2132200	0	0	0	0	0	0	0	2132200	2132200	0	0	0	0	5486	2636	5180	34038;34039	46599;46600	46600	2597		2	
ATVTATTK	1	Acetyl (Protein N-term)	833.44945	0.44944778	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.86	4.52	5			2						1	2	2	2	17.955	15.497	2	0.00021506	6782	160513_QHF_FH_JSI11Kac_1	60.478	26.474			0.93995	0.95349	24.449	7	0	Median	1.1703	0.96933	NaN	1	0	Median	0.76602	0.88973	9.7887	2	0	Median	0.98631	0.96285	6.3513	2	0	Median	1.2122	1.2772	44.422	2	0	Median	1543300000	788930000	754330000	364350000	159160000	205190000	397830000	229740000	168090000	408190000	198620000	209570000	372890000	201410000	171480000	5487	5487	5181	34040;34041;34042;34043;34044;34045;34046	46601;46602;46603;46604;46605;46606;46607	46605			7	
ATVTPSPVK	1	Unmodified	898.51238	0.51238239	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.63	4	3			1	1				3	2	3	1	17.812	15.108	2	5.1589E-06	14160	160511_QHF_FH_JSI9i_1	116.73	90.989			0.95552	0.93933	10.316	8	0	Median	1.1222	0.94111	3.9168	3	0	Median	0.88741	1.0465	11.596	2	0	Median	0.91333	0.89179	7.0776	2	0	Median	0.75311	0.80392	NaN	1	0	Median	6351900000	3504700000	2847200000	1522000000	553170000	968830000	1499900000	943760000	556100000	1310300000	753460000	556890000	2019700000	1254300000	765360000	5488	4657	5182	34047;34048;34049;34050;34051;34052;34053;34054;34055	46608;46609;46610;46611;46612;46613;46614;46615;46616;46617;46618;46619	46617			12	
ATVTVNTSDLGNK	1	Unmodified	1318.6729	0.67285879	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	39.416	35.177	2	7.2306E-05	31173	160511_QHF_FH_JSI10i_1	164.64	137.31			0.75898	0.88177	30.373	7	3	Median	0.62732	0.51441	NaN	1	1	Median	0.87346	1.0235	21.079	2	1	Median	0.87249	0.85747	17.733	2	1	Median	0.78861	0.848	39.779	2	0	Median	440930000	253500000	187430000	70344000	33193000	37151000	128900000	80549000	48348000	135570000	77453000	58121000	106110000	62301000	43812000	5489	2549	5183	34056;34057;34058;34059;34060;34061;34062	46620;46621;46622;46623;46624;46625	46623			6	
ATVVESSEK	1	Unmodified	948.47639	0.47639081	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	9.2566	7.1339	2	7.9941E-05	5903	160511_QHF_FH_JSI9i_1	95.502	65.317			1.2111	1.1222	39.866	4	1	Median	1.3838	1.1494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.19	1.1613	68.881	2	1	Median	1.06	1.0956	NaN	1	0	Median	477940000	257540000	220400000	202490000	103760000	98727000	0	0	0	148660000	87174000	61490000	126790000	66606000	60181000	5490	1976	5184	34063;34064;34065;34066	46626;46627;46628;46629;46630	46630			4	
ATVVGPDSSK	1	Unmodified	959.49238	0.49237523	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		16.881	9.484	2	0.028514	7230	160513_QHF_FH_JSI11Kac_3	47.198	23.043			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5491	2564	5185	34067	46631	46631			1	
ATVVVGDLHPLR	0	Unmodified	1275.7299	0.72992016	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	49.466	49.387	2;3	0.0001653	42314	160511_QHF_FH_JSI12i_3	68.676	58.888			0.68204	0.67081	13.28	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62703	0.59228	3.1468	2	2	Median	0.7394	0.74303	NaN	1	1	Median	172070000	101440000	70632000	0	0	0	0	0	0	77966000	48605000	29361000	94108000	52836000	41271000	5492	4984	5186	34068;34069;34070	46632;46633;46634	46634			3	
ATVWDLRK	1	Unmodified	987.55016	0.55016488	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	0.361		2	11							2	3	6	2	36.575	35.982	2;3	7.9249E-05	31214	160511_QHF_FH_JSI11i_3	111.95	66.866			1.05	1.0661	62.506	12	1	Median	1.1371	0.90275	1.5657	2	0	Median	0.95941	1.0789	5.815	3	0	Plateau	1.1875	1.0849	97.446	5	1	Median	0.76189	0.76579	6.2605	2	0	Median	2419200000	1193900000	1225300000	623370000	253840000	369530000	578790000	296990000	281800000	939890000	471200000	468690000	277180000	171890000	105280000	5493	636	5187	34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083	46635;46636;46637;46638;46639;46640;46641;46642;46643;46644;46645;46646;46647;46648;46649;46650;46651	46636			16	
ATVWEGSNR	0	Unmodified	1018.4832	0.48320752	4731	Q9H568	ACTL8	Actin-like protein 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	19.002	17.914	2	0.012204	14731	160511_QHF_FH_JSI12i_2	47.869	31.329			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5494	4731	5188	34084	46652	46652			1	
ATVWMLR	0	Unmodified	875.46874	0.46874343	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	64.632	54.752	2	0.04281	28680	160513_QHF_FH_JSI12Kac_6	64.523	45.163			0.66428	0.69428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66428	0.69428	NaN	1	1	Median	18664000	10752000	7912100	0	0	0	0	0	0	0	0	0	18664000	10752000	7912100	5495	3146	5189	34085	46653	46653			1	
ATVYAQLVESGR	0	Unmodified	1292.6725	0.67246486	5037	Q9NVM4	PRMT7	Protein arginine N-methyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.26		2	2					4		2	2	2	2	53.185	48.27	2	5.1485E-06	42599	160511_QHF_FH_JSI11i_3	123.01	95.265			0.67313	0.74232	33.833	7	1	Median	0.69552	0.57499	36.123	2	0	Median	0.56811	0.67765	15.434	2	1	Median	0.88309	0.84977	35.59	2	0	Median	1.0541	1.1898	NaN	1	0	Median	217300000	106890000	110410000	27467000	15660000	11808000	36608000	23563000	13045000	79750000	35940000	43810000	73477000	31731000	41746000	5496	5037	5190	34086;34087;34088;34089;34090;34091;34092;34093	46654;46655;46656;46657;46658;46659;46660;46661;46662	46655			8	
ATVYEVIY	0	Unmodified	956.4855	0.48549893	2220	Q04726;Q04724;Q04727	TLE3;TLE1;TLE4	Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	67.838	67.252	2	0.0057197	61161	160511_QHF_FH_JSI11i_1	64.776	55.306			0.74837	0.75037	26.385	4	1	Median	0.99263	0.83507	NaN	1	0	Median	0.4165	0.46826	NaN	1	0	Median	0.82468	0.80029	NaN	1	0	Median	0.67913	0.70355	NaN	1	1	Median	64945000	40094000	24851000	8950400	4135900	4814500	20493000	15513000	4980000	16251000	8187500	8063500	19251000	12257000	6993500	5497	2220	5191	34094;34095;34096;34097;34098	46663;46664;46665;46666;46667;46668	46664			6	
ATVYYQAPLEK	1	Unmodified	1281.6605	0.66050319	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.675	44.004	2	4.632E-05	39548	160511_QHF_FH_JSI10i_1	96.113	88.07			0.47508	0.47533	15.376	4	0	Median	0.66823	0.54923	NaN	1	0	Median	0.32983	0.3937	NaN	1	0	Median	0.44645	0.43586	NaN	1	0	Median	0.50554	0.51837	NaN	1	0	Median	272740000	174630000	98115000	67463000	41512000	25951000	53922000	35625000	18297000	86233000	54410000	31823000	65126000	43083000	22043000	5498	3133	5192	34099;34100;34101;34102	46669;46670;46671;46672;46673;46674;46675;46676	46674			8	
ATVYYQAPLEKPR	1	Acetyl (K)	1576.8249	0.82494275	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		66.777	55.734	2	0.0099754	31066	160513_QHF_FH_JSI11Kac_4	82.171	36.013			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5499	3133	5193	34103	46677	46677	2777		1	
ATWKSNYFLK	2	Acetyl (K)	1298.6659	0.66592292	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	1	0	0	1			By MS/MS		16	0									2			2		75.147	65.81	2	7.2452E-09	35793	160513_QHF_FH_JSI11Kac_6	124.33	91.071			1.6418	1.5114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6418	1.5114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	199880000	172740000	27138000	0	0	0	0	0	0	199880000	172740000	27138000	0	0	0	5500	837	5194	34104;34105	46678;46679	46678	486		2	
ATWPSWQGEEK	1	Unmodified	1317.599	0.59896556	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0			By matching	By MS/MS	2.5	0.5		1	1									1	1	49.957	49.574	2	1.5202E-07	42292	160511_QHF_FH_JSI12i_3	123.75	110.63			1.0781	1.0917	23.249	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92126	0.92622	NaN	1	0	Median	1.2617	1.2868	NaN	1	0	Median	167830000	86185000	81643000	0	0	0	0	0	0	117010000	69257000	47754000	50817000	16928000	33889000	5501	2332	5195	34106;34107	46680	46680			1	
ATYATSDFTLLELNNAANPAFNLFWAGWDR	0	Unmodified	3388.6153	0.61529091	59	CON__P15636			yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	5.55		1	2	1					1	1		4		101.91	98.131	3	9.6731E-26	83836	160511_QHF_FH_JSI9i_3	124.79	119.47		+	1.254	1.2001	39.968	4	3	Median	0.70183	0.58071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4216	1.4124	10.653	3	2	Plateau	NaN	NaN	NaN	0	0	Median	149660000	99085000	50574000	19675000	15599000	4075100	0	0	0	129990000	83486000	46499000	0	0	0	5502	59	5196	34108;34109;34110;34111;34112	46681;46682;46683;46684;46685;46686	46683			6	
ATYATSDFTLLELNNAANPAFNLFWAGWDRR	0	Unmodified	3544.7164	0.71640194	59	CON__P15636			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		10.7	6.45		4	3	1					11	10	8	1		104.26	100.95	3;4	3.7696E-163	54020	160513_QHF_FH_JSI10Kac_6	271.72	261.57		+	0.90054	1.1409	28.425	11	5	Plateau	0.89378	0.77551	15.233	6	4	Median	1.0234	1.1942	37.378	4	1	Median	0.88077	0.85391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	550740000	267370000	283380000	107050000	59868000	47181000	431590000	201260000	230330000	12106000	6239100	5866800	0	0	0	5503	59	5197	34113;34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126;34127;34128;34129;34130;34131	46687;46688;46689;46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700;46701;46702;46703;46704;46705;46706;46707;46708	46703			22	
ATYLEFIQQNEER	0	Acetyl (Protein N-term)	1681.7948	0.79476484	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	97.988	97.744	2	1.7631E-06	88458	160511_QHF_FH_JSI12i_1	127.42	107.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5504	2675	5198	34132;34133;34134	46709;46710;46711	46710			3	
ATYLEFIQQNEERDGVR	0	Acetyl (Protein N-term)	2109.0127	0.012696536	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	91.996	91.639	2	2.0645E-05	78977	160511_QHF_FH_JSI12i_2	90.653	58.591			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5505	2675	5199	34135;34136;34137;34138;34139;34140	46712;46713;46714;46715;46716;46717;46718	46712			7	
AVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVK	1	Unmodified	3613.6428	0.64284435	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	83.175	83.079	4	2.0153E-23	71936	160511_QHF_FH_JSI12i_3	108.73	107.06			1.0151	1.0044	0.78183	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0575	1.0099	NaN	1	0	Median	0.97437	0.99883	NaN	1	0	Median	179380000	93882000	85496000	0	0	0	0	0	0	81428000	41215000	40213000	97950000	52667000	45283000	5506	2806	5200	34141;34142	46719;46720	46719			2	
AVAAASLVPVVESLVYLQTQK	1	Unmodified	2185.2358	0.23582018	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.68	102.69	3	4.9987E-08	89455	160511_QHF_FH_JSI12i_3	93.5	84.681			1.0466	1.0329	4.8399	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0303	0.99818	NaN	1	0	Median	1.0632	1.0689	NaN	1	0	Median	141280000	72255000	69026000	0	0	0	0	0	0	62434000	26973000	35461000	78847000	45282000	33565000	5507	232	5201	34143;34144	46721	46721			1	
AVAAATYK	1	Unmodified	793.4334	0.43340378	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		4.25	5.63	3						1			1	1	2		13.07	10.861	2	0.009826	9119	160511_QHF_FH_JSI10i_1	55.676	30.678			1.0353	1.0029	5.8066	4	0	Median	1.2353	1.0203	NaN	1	0	Median	0.78234	0.91219	NaN	1	0	Median	1.0353	1.0129	3.8309	2	0	Median	NaN	NaN	NaN	0	0	Median	275950000	140780000	135160000	75873000	35650000	40223000	114880000	65954000	48921000	85199000	39180000	46019000	0	0	0	5508	2604	5202	34145;34146;34147;34148	46722;46723;46724	46723			3	
AVAAAVR	0	Unmodified	656.39696	0.3969587	2878	Q5BKU9	OXLD1	Oxidoreductase-like domain-containing protein 1	yes	no	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		17.487	16.949	2	0.022052	14033	160511_QHF_FH_JSI11i_3	56.255	56.255			1.0018	1.0384	6.9842	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86683	0.98836	NaN	1	0	Median	1.1578	1.091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107260000	53205000	54055000	0	0	0	31957000	17199000	14757000	75303000	36005000	39298000	0	0	0	5509	2878	5203	34149;34150	46725	46725			1	
AVAAAYTFLQR	0	Unmodified	1209.6506	0.6506072	3885	Q92791	LEPREL4	Synaptonemal complex protein SC65	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.7	5.52			2					4	1	3	4			65.804	59.365	2	0.00027385	49527	160511_QHF_FH_JSI10i_3	77.677	64.324			1.2492	1.0471	40.438	5	4	Median	1.0763	0.88852	23.219	2	2	Median	0.92721	1.0789	47.414	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	188390000	70328000	118060000	42316000	22486000	19830000	146070000	47842000	98227000	0	0	0	0	0	0	5510	3885	5204	34151;34152;34153;34154;34155;34156;34157	46726;46727;46728;46729;46730;46731;46732;46733	46726			8	
AVAAEAQDTATR	0	Unmodified	1202.5891	0.58912916	266	O15230	LAMA5	Laminin subunit alpha-5	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			11.614	11.378	2	2.304E-05	9203	160511_QHF_FH_JSI10i_1	88.681	76.153			0.81441	0.91496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81441	0.91496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20460000	11401000	9058900	0	0	0	20460000	11401000	9058900	0	0	0	0	0	0	5511	266	5205	34158;34159	46734;46735	46735			2	
AVAALDGAK	1	Unmodified	814.45487	0.45486751	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	1	2	22.131	17.623	2	0.00065081	15140	160511_QHF_FH_JSI9i_1	81.296	41.193			0.50657	0.5674	31.845	4	4	Median	NaN	NaN	NaN	0	0	Median	0.56805	0.66588	19.598	2	2	Median	NaN	NaN	NaN	0	0	Median	0.41731	0.44363	31.763	2	2	Median	929290000	688300000	240990000	0	0	0	494020000	365270000	128750000	0	0	0	435270000	323030000	112240000	5512	1397	5206	34160;34161;34162;34163;34164;34165	46736;46737;46738;46739;46740;46741	46740			6	
AVAALLTIPEAEK	1	Unmodified	1324.7602	0.76021723	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		3	5	4	5	76.027	71.899	2	2.4726E-16	36656	160513_QHF_FH_JSI11Kac_5	157.95	124.08			1.0408	1.0302	13.358	17	1	Median	1.1096	0.96367	7.9709	3	1	Plateau	0.77229	0.9224	15.326	5	0	Median	1.0437	1.0588	14.587	4	0	Median	1.0408	1.1548	6.5802	5	0	Median	2388000000	1203900000	1184100000	354190000	155500000	198690000	566160000	317990000	248180000	911450000	460340000	451120000	556230000	270100000	286120000	5513	3343	5207	34166;34167;34168;34169;34170;34171;34172;34173;34174;34175;34176;34177;34178;34179;34180;34181;34182	46742;46743;46744;46745;46746;46747;46748;46749;46750;46751;46752;46753;46754;46755;46756;46757;46758;46759;46760;46761;46762;46763;46764;46765	46760			22	
AVAAPRPDR	0	Unmodified	951.52501	0.52501276	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		9.6264	9.2159	3	0.020029	6828	160511_QHF_FH_JSI9i_3	31.379	8.3073			1.1627	0.96234	22.16	3	0	Plateau	1.1697	0.96234	NaN	1	0	Median	0.96527	1.0899	NaN	1	0	Median	0.78056	0.70854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	524710000	268000000	256710000	332340000	162290000	170050000	143700000	73910000	69790000	48671000	31795000	16876000	0	0	0	5514	543	5208	34183;34184;34185	46766	46766			1	
AVADAIR	0	Unmodified	714.40244	0.40243801	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	14.389	13.894	2	0.0040196	11039	160511_QHF_FH_JSI11i_2	100.74	35.966			0.88168	0.91751	60.622	12	4	Median	1.0406	0.89444	80.648	3	1	Median	0.59639	0.73192	52.611	3	1	Median	0.89974	0.94118	65.386	3	1	Median	0.90876	1.0241	75.945	3	1	Median	12012000000	8703500000	3308300000	2672700000	1927000000	745760000	3417600000	2621900000	795780000	3100500000	2181300000	919270000	2820900000	1973400000	847470000	5515	1722	5209	34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197	46767;46768;46769;46770;46771;46772;46773;46774;46775;46776;46777;46778;46779;46780;46781	46780			15	
AVADQVYGDQDMHEVVRK	1	Unmodified	2058.9793	0.97928792	4084	Q96G74	OTUD5	OTU domain-containing protein 5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.031	38.031	4	2.0716E-05	33380	160511_QHF_FH_JSI11i_3	76.713	66.925			0.94525	0.88525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94525	0.88525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46420000	26767000	19653000	0	0	0	0	0	0	46420000	26767000	19653000	0	0	0	5516	4084	5210	34198	46782	46782			1	
AVAEAVETGEEDVIMEALR	0	Unmodified	2030.983	0.98303589	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	8										3	2	3	96.638	96.488	2;3	1.8834E-15	87286	160511_QHF_FH_JSI10i_1	196.58	166.64			1.0053	0.99631	42.263	7	5	Median	NaN	NaN	NaN	0	0	Median	0.92762	1.0594	9.986	2	1	Median	1.3179	1.2689	78.914	2	2	Median	1.0053	0.99631	45.001	3	2	Median	123560000	62076000	61486000	0	0	0	61893000	32811000	29083000	22934000	10279000	12656000	38734000	18987000	19747000	5517	4908	5211	34199;34200;34201;34202;34203;34204;34205;34206	46783;46784;46785;46786;46787;46788;46789	46789			7	
AVAEEDNGSIGEETDSSPGRK	1	Unmodified	2146.9614	0.96144883	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	22.111	21.662	3	5.3543E-18	18679	160511_QHF_FH_JSI10i_1	143.57	135.18			0.85023	0.86938	20.337	5	3	Median	0.99553	0.82625	NaN	1	1	Median	0.78444	0.93032	NaN	1	0	Median	0.95298	0.90154	39.652	2	2	Median	0.85023	0.86938	NaN	1	0	Median	311790000	149320000	162470000	57521000	24324000	33198000	59079000	38186000	20892000	128510000	50416000	78095000	66675000	36392000	30283000	5518	2446	5212	34207;34208;34209;34210;34211;34212	46790;46791;46792;46793;46794;46795;46796;46797;46798;46799	46796			10	
AVAEELAK	1	Unmodified	829.45453	0.45453316	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	18.88	18.58	2	0.0027493	16203	160511_QHF_FH_JSI12i_1	85.212	35.853			0.72518	0.7168	35.794	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96235	0.92324	NaN	1	1	Median	0.54646	0.55651	NaN	1	1	Median	285220000	165580000	119640000	0	0	0	0	0	0	156480000	96759000	59723000	128740000	68826000	59916000	5519	3955	5213	34213;34214;34215	46800;46801;46802	46802			3	
AVAENQPFLIEAMTYR	0	Unmodified	1851.9189	0.91891949	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	88.527	88.249	2;3	7.3667E-17	78251	160511_QHF_FH_JSI10i_2	124.12	102.87			1.1626	1.1244	8.3086	2	2	Median	1.2094	1.0603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1177	1.1925	NaN	1	1	Median	34305000	17288000	17017000	15327000	8690100	6636800	0	0	0	0	0	0	18978000	8598300	10380000	5520	1020	5214	34216;34217;34218;34219;34220	46803;46804;46805;46806;46807	46805			5	
AVAEQIPLLVQGVR	0	Unmodified	1491.8773	0.87731267	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.08	6	8	5				1	8		5	7	7	9	81.287	77.441	2;3	5.883E-40	69146	160511_QHF_FH_JSI12i_2	201.84	160.85			1.0096	1.0364	12.198	27	1	Median	1.2651	1.0784	8.6447	5	0	Median	0.82719	1.0125	9.4911	6	0	Median	1.0305	0.98341	4.9577	7	0	Median	0.94636	1.0481	17.392	9	1	Median	1065200000	526870000	538330000	196540000	86565000	109980000	216380000	116500000	99880000	386380000	192630000	193750000	265900000	131180000	134720000	5521	5616	5215	34221;34222;34223;34224;34225;34226;34227;34228;34229;34230;34231;34232;34233;34234;34235;34236;34237;34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248	46808;46809;46810;46811;46812;46813;46814;46815;46816;46817;46818;46819;46820;46821;46822;46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840;46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854	46814			47	
AVAFFLESIAMHDIIAAEK	1	Unmodified	2075.0761	0.076148416	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.64	6.21			5	1					5	2	4	2	3	99.274	94.831	2;3	7.1342E-199	52175	160513_QHF_FH_JSI10Kac_6	304.29	257.81			0.8182	0.85968	22.721	11	5	Median	1.4246	1.199	14.877	2	1	Median	0.78891	0.91696	19.694	4	1	Median	0.86573	0.83707	23.76	2	0	Median	0.78328	0.79352	13.402	3	3	Plateau	5550700000	3075600000	2475100000	770980000	329040000	441940000	1498100000	948670000	549390000	1093100000	527570000	565560000	2188500000	1270300000	918200000	5522	2094	5216	34249;34250;34251;34252;34253;34254;34255;34256;34257;34258;34259	46855;46856;46857;46858;46859;46860;46861;46862;46863;46864;46865;46866	46866			12	
AVAFFLESIAMHDIIAAEK	1	Oxidation (M)	2091.0711	0.071063038	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0				By MS/MS	9.5	6.5			1						1				2	97.463	92.749	3	2.8459E-05	88112	160511_QHF_FH_JSI12i_3	75.215	59.793			1.024	1.0585	12.102	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.024	1.0585	12.102	2	1	Median	270450000	131550000	138900000	0	0	0	0	0	0	0	0	0	270450000	131550000	138900000	5523	2094	5216	34260;34261	46867;46868	46867		1758	1	
AVAFHPAGGLYAVGSNSK	1	Unmodified	1744.8897	0.88966827	634	O94967	WDR47	WD repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	51.361	50.636	3	1.0426E-08	43339	160511_QHF_FH_JSI12i_3	121.32	110.47			0.94206	0.96464	8.5655	5	2	Median	1.3026	1.0849	NaN	1	0	Median	0.84577	0.99121	NaN	1	0	Median	1.0046	0.94241	NaN	1	0	Median	0.89459	0.90871	8.4477	2	2	Median	373330000	186130000	187200000	73720000	31036000	42684000	76619000	36369000	40250000	76847000	41305000	35542000	146140000	77419000	68722000	5524	634	5217	34262;34263;34264;34265;34266	46869;46870;46871;46872;46873;46874;46875;46876	46876			8	
AVAFQNPQTHVIENLHAAAYR	0	Unmodified	2349.1978	0.19781197	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.47		4	9						8	6	6	5	4	64.134	59.857	3;4	3.7406E-146	32613	160513_QHF_FH_JSI10Kac_6	228.63	208.54			1.1099	1.022	16.911	19	1	Median	1.2871	1.0756	15.417	5	0	Median	0.89884	1.0693	21.519	6	0	Median	1.0354	0.95606	10.607	5	1	Median	0.89009	0.94383	15.624	3	0	Median	5859800000	2840000000	3019900000	2067400000	895260000	1172200000	2185000000	1141300000	1043700000	990480000	465580000	524900000	616950000	337850000	279100000	5525	1216	5218	34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280;34281;34282;34283;34284;34285;34286;34287	46877;46878;46879;46880;46881;46882;46883;46884;46885;46886;46887;46888;46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904;46905;46906;46907;46908;46909;46910;46911;46912;46913;46914	46912			38	
AVAFSEDGQK	1	Unmodified	1050.4982	0.49818889	4758	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		28.777	28.558	2	0.047004	25349	160511_QHF_FH_JSI11i_1	43.808	15.634			0.4575	0.43658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4575	0.43658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106090000	66563000	39532000	0	0	0	0	0	0	106090000	66563000	39532000	0	0	0	5526	4758	5219	34288	46915	46915			1	
AVAFSPVTELK	1	Unmodified	1160.6441	0.64412484	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							2	1	1	1	62.366	61.557	2	0.00012568	50426	160511_QHF_FH_JSI9i_3	96.331	66.077			0.34956	0.42836	76.258	5	5	Median	0.25068	0.20575	22.253	2	2	Median	0.34956	0.42836	NaN	1	1	Median	0.66804	0.65723	NaN	1	1	Median	1.1419	1.1749	NaN	1	1	Median	1113800000	989420000	124360000	666200000	631580000	34622000	279640000	247120000	32520000	116000000	83158000	32841000	51940000	27566000	24374000	5527	1129	5220	34289;34290;34291;34292;34293	46916;46917;46918;46919;46920	46919			5	
AVAFSPVTELKK	2	Unmodified	1288.7391	0.73908786	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	2	3	3	51.817	50.932	2;3	3.7827E-08	41730	160511_QHF_FH_JSI9i_3	115.14	105.08			0.9619	0.99231	19.869	11	1	Median	1.4113	1.1434	25.474	3	0	Median	0.93405	1.0545	5.3256	2	0	Median	1.2744	1.1831	25.756	3	1	Plateau	0.98061	0.99231	16.694	3	0	Plateau	3371800000	1711600000	1660200000	486180000	209950000	276230000	491750000	246530000	245220000	952870000	497340000	455530000	1441000000	757780000	683200000	5528	1129	5221	34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304	46921;46922;46923;46924;46925;46926;46927;46928;46929;46930;46931;46932;46933;46934;46935;46936;46937	46931			16	
AVAGDASESALLK	1	Unmodified	1230.6456	0.6455814	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	44.06	39.727	2	3.8928E-07	35810	160511_QHF_FH_JSI11i_1	136.02	107.33			0.75416	0.84275	16.721	7	0	Median	0.73829	0.60161	NaN	1	0	Median	0.71975	0.85004	5.5489	2	0	Median	0.80125	0.78932	9.2635	2	0	Median	0.89457	0.96379	4.989	2	0	Median	1555000000	802300000	752720000	277240000	132690000	144550000	429760000	230220000	199530000	465470000	227930000	237540000	382550000	211460000	171090000	5529	821	5222	34305;34306;34307;34308;34309;34310;34311	46938;46939;46940;46941;46942;46943;46944;46945;46946	46939			9	
AVAGNISDPGLQK	1	Unmodified	1268.6725	0.67246486	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.95	7	2				2	3			3	4	4	3	36.257	31.447	2;3	6.6243E-22	30801	160511_QHF_FH_JSI12i_1	169.58	150.8			0.87014	1.516	58.897	13	3	Linear	0.95891	0.78934	59.493	3	0	Plateau	0.43601	0.4835	83.043	4	3	Median	1.049	1.0023	12.576	3	0	Plateau	0.91516	0.97345	21.729	3	0	Plateau	3788800000	2004800000	1784100000	839360000	399480000	439880000	904020000	562680000	341340000	1062200000	566180000	496040000	983220000	476430000	506800000	5530	1139	5223	34312;34313;34314;34315;34316;34317;34318;34319;34320;34321;34322;34323;34324;34325	46947;46948;46949;46950;46951;46952;46953;46954;46955;46956;46957;46958;46959;46960;46961;46962;46963;46964	46951			18	
AVAGQQQASVTAGK	1	Unmodified	1314.6892	0.68917755	2608	Q15025	TNIP1	TNFAIP3-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.97	13.844	2	9.0606E-06	11365	160511_QHF_FH_JSI11i_1	86.114	60.977			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5531	2608	5224	34326	46965	46965			1	
AVAGWEEVLR	0	Unmodified	1128.5928	0.59275797	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	65.024	63.952	2	6.0977E-05	54988	160511_QHF_FH_JSI12i_2	90.906	71.119			0.88701	1.046	7.0784	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88498	1.0997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88904	0.9949	NaN	1	0	Median	140800000	72473000	68327000	0	0	0	68582000	32199000	36384000	0	0	0	72217000	40274000	31943000	5532	3221	5225	34327;34328	46966;46967;46968;46969;46970	46967			5	
AVAHCPK	1	Unmodified	781.39049	0.39049311	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		4.5386	4.5386	2	0.0099829	2182	160511_QHF_FH_JSI11i_3	66.994	46.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5533	623	5226	34329	46971	46971			1	
AVAHHTTAAFIR	0	Unmodified	1293.6942	0.69420335	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0		By MS/MS	By matching		16	0									4		3	1		26.469	18.21	2;3	0.00025427	10800	160513_QHF_FH_JSI10Kac_6	84.479	75.047			0.93152	1.0661	12.7	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9822	1.1616	12.121	2	1	Median	1.0219	0.98751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35297000	18704000	16593000	0	0	0	26233000	14090000	12143000	9064100	4613900	4450200	0	0	0	5534	1567	5227	34330;34331;34332;34333	46972;46973;46974	46972			3	
AVAIDLPGLGHSK	1	Unmodified	1276.7139	0.71393574	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	60.075	59.517	2;3	1.7441E-05	52904	160511_QHF_FH_JSI11i_3	101.53	72.768			0.91251	1.0009	42.504	10	7	Median	1.1526	1.0123	NaN	1	1	Median	0.81576	1.0066	2.4002	2	2	Median	0.88939	0.90226	63.99	4	3	Median	1.1275	1.1501	12.812	3	1	Plateau	2373900000	1301400000	1072600000	131410000	66934000	64481000	419450000	246310000	173140000	973220000	564740000	408480000	849850000	423390000	426460000	5535	4126	5228	34334;34335;34336;34337;34338;34339;34340;34341;34342;34343	46975;46976;46977;46978;46979;46980;46981;46982;46983;46984;46985	46975			10	
AVAISLPK	1	Unmodified	797.50109	0.50108942	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.48	4	4	1				4	6		3	6	4	6	52.707	47.254	2	0.00028113	42520	160511_QHF_FH_JSI11i_1	113.7	72.194			1.0751	1.0633	22.94	17	1	Median	1.0702	0.89018	7.1662	3	0	Plateau	0.73572	0.87993	9.1661	4	1	Median	1.1424	1.1348	5.6169	4	0	Median	1.1066	1.199	28.312	6	0	Median	6169100000	3123200000	3045900000	997220000	495620000	501590000	1450600000	826580000	624020000	2083400000	983620000	1099800000	1637900000	817370000	820490000	5536	1706	5229	34344;34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355;34356;34357;34358;34359;34360;34361;34362	46986;46987;46988;46989;46990;46991;46992;46993;46994;46995;46996;46997;46998;46999;47000;47001;47002;47003;47004;47005;47006;47007;47008;47009;47010;47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029	46988			44	
AVALYFEDK	1	Unmodified	1054.5335	0.53351176	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			64.33	53.647	2	0.033938	27161	160513_QHF_FH_JSI10Kac_5	54.157	28.42			0.58506	0.66256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58506	0.66256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2059900	1151600	908300	0	0	0	2059900	1151600	908300	0	0	0	0	0	0	5537	5461	5230	34363	47030	47030			1	
AVALYFIDK	1	Unmodified	1038.575	0.57498264	998	P11387;Q969P6	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.45		3	4					4	3	4	3	3	4	74.827	69.435	2	5.8767E-08	36508	160513_QHF_FH_JSI9Kac_6	145.63	112.79			1.0638	1.0714	25.923	14	4	Median	1.3717	1.1342	10.115	4	1	Median	0.90718	1.0909	22.634	3	1	Median	1.116	1.0544	25.73	3	1	Median	0.82039	0.90277	39.421	4	1	Median	1308500000	622090000	686390000	216720000	100600000	116120000	172100000	101480000	70625000	361470000	156220000	205250000	558170000	263790000	294390000	5538	998	5231	34364;34365;34366;34367;34368;34369;34370;34371;34372;34373;34374;34375;34376;34377	47031;47032;47033;47034;47035;47036;47037;47038;47039;47040;47041;47042;47043;47044;47045;47046;47047;47048;47049;47050;47051;47052;47053;47054	47049			24	
AVAMLWK	1	Unmodified	817.45203	0.45203074	169	O14521	SDHD	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4	2	4	3	1	59.269	53.323	2	0.0034019	44653	160511_QHF_FH_JSI10i_3	94.669	68.56			1.9445	1.9797	38.904	6	5	Median	2.5621	2.1903	NaN	1	1	Median	1.1991	1.4267	64.078	2	2	Median	2.0663	1.9797	0.93802	2	2	Median	1.079	1.1096	NaN	1	0	Median	707230000	306040000	401190000	21906000	7964800	13941000	67021000	29844000	37177000	243500000	100690000	142820000	374800000	167550000	207250000	5539	169	5232	34378;34379;34380;34381;34382;34383;34384;34385;34386;34387	47055;47056;47057;47058;47059;47060;47061;47062;47063;47064;47065;47066	47057			12	
AVAMLWKL	1	Unmodified	930.53609	0.53609472	169	O14521	SDHD	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	82.359	77.888	2	0.0017183	67347	160511_QHF_FH_JSI9i_3	86.113	37.609			1.2389	1.2616	97.012	8	2	Median	1.5334	1.2926	4.737	2	0	Median	1.005	1.15	14.402	2	0	Median	0.5475	0.51972	153.91	2	1	Median	0.46616	0.48396	161.22	2	1	Median	692560000	436190000	256380000	99209000	40337000	58872000	129560000	70333000	59224000	188630000	116640000	71996000	275170000	208880000	66285000	5540	169	5233	34388;34389;34390;34391;34392;34393;34394;34395	47067;47068;47069;47070;47071;47072;47073;47074	47070			8	
AVANESGLNFISVK	1	Unmodified	1447.7671	0.76709352	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.79	1	3					2			1	1	2	2	69.479	65.35	2	5.8817E-05	56466	160511_QHF_FH_JSI12i_2	145.29	124.42			0.60156	0.59042	143.28	6	3	Median	0.62347	0.53107	NaN	1	0	Median	0.58042	0.65641	NaN	1	1	Median	0.91654	0.89925	34.052	2	0	Median	0.044683	0.048573	41.332	2	2	Median	1390700000	1265800000	124900000	65457000	40091000	25366000	2584700	1680400	904370	106180000	64702000	41477000	1216500000	1159400000	57156000	5541	285	5234	34396;34397;34398;34399;34400;34401	47075;47076;47077;47078;47079	47075			3	
AVANETGAFFFLINGPEIMSK	1	Unmodified	2255.1296	0.12964055	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.47		9	5	1					8	4	6	7	6	100.14	96.782	2;3	1.2772E-258	49928	160513_QHF_FH_JSI11Kac_6	416.8	379.43			0.90118	0.90321	21.84	23	10	Median	1.0084	0.85927	12.744	4	1	Median	0.72445	0.84795	13.566	6	4	Median	0.94805	0.90694	35.755	7	3	Median	0.90271	0.94486	15.015	6	2	Median	7408900000	3786400000	3622500000	1740300000	834950000	905390000	1254600000	699950000	554640000	2262800000	1113400000	1149400000	2151200000	1138200000	1013000000	5542	1846	5235	34402;34403;34404;34405;34406;34407;34408;34409;34410;34411;34412;34413;34414;34415;34416;34417;34418;34419;34420;34421;34422;34423;34424	47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100;47101;47102;47103;47104;47105;47106;47107;47108;47109;47110;47111;47112	47086			33	
AVANETGAFFFLINGPEIMSK	1	Oxidation (M)	2271.1246	0.12455517	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		94.813	85.421	3	0.0039397	48327	160513_QHF_FH_JSI11Kac_6	59.539	50.255			0.98828	0.94798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98828	0.94798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110000000	52887000	57115000	0	0	0	0	0	0	110000000	52887000	57115000	0	0	0	5543	1846	5235	34425	47113	47113		1521	1	
AVANQTSATFLR	0	Unmodified	1277.6728	0.67279921	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.14	6.28	4	4	4		1	3	3	5	4	5	8	7	8	43.615	37.85	2;3	2.0761E-75	20443	160513_QHF_FH_JSI11Kac_6	232.88	191.85			0.99896	1.0616	6.8057	27	0	Median	1.2953	1.1039	6.7264	5	0	Median	0.92205	1.0806	8.5171	8	0	Median	1.0585	1.0387	7.5834	7	0	Median	0.99815	1.0616	1.4922	7	0	Median	5402700000	2712300000	2690400000	850490000	374350000	476150000	1312400000	704830000	607550000	1805300000	900270000	905000000	1434500000	732830000	701690000	5544	1983	5236	34426;34427;34428;34429;34430;34431;34432;34433;34434;34435;34436;34437;34438;34439;34440;34441;34442;34443;34444;34445;34446;34447;34448;34449;34450;34451;34452;34453	47114;47115;47116;47117;47118;47119;47120;47121;47122;47123;47124;47125;47126;47127;47128;47129;47130;47131;47132;47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143;47144;47145;47146;47147;47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161;47162;47163;47164;47165;47166;47167;47168;47169;47170	47127			56	
AVANSRPAK	1	Unmodified	912.51411	0.51411372	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	2	1	1	4.7707	1.3248	2;3	0.000999	2239	160511_QHF_FH_JSI9i_3	89.698	58.469			0.79964	0.91523	11.316	3	0	Plateau	1.2072	0.97567	NaN	1	0	Median	0.7469	0.85853	NaN	1	0	Median	0.79964	0.77857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	370420000	190050000	180370000	178910000	84084000	94825000	177310000	97967000	79348000	14196000	7996700	6199700	0	0	0	5545	1139	5237	34454;34455;34456;34457;34458	47171;47172;47173;47174;47175	47173			5	
AVANTMR	0	Unmodified	761.38541	0.38540773	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.02	2	5	3				1	4		3	5	3	4	7.7059	4.3073	2	1.5448E-05	4824	160511_QHF_FH_JSI9i_2	143.37	81.37			1.0218	1.0224	12.961	15	0	Median	1.1948	1.0168	10.154	3	0	Median	0.92723	1.119	16.348	5	0	Median	1.089	1.0862	9.0299	3	0	Plateau	0.91347	0.98781	6.6594	4	0	Median	7857600000	3609000000	4248600000	1317500000	493910000	823550000	2045000000	975170000	1069800000	2266000000	1108900000	1157100000	2229200000	1031000000	1198100000	5546	1630	5238	34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472;34473	47176;47177;47178;47179;47180;47181;47182;47183;47184;47185;47186;47187;47188;47189;47190;47191	47183			16	
AVANYDSVEEGEK	1	Unmodified	1409.6311	0.63105355	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	5.65	4				2	5				1	4	2	4	31.713	26.032	2	3.8026E-22	22762	160511_QHF_FH_JSI11i_1	175.49	148.19			0.98305	0.96735	18.428	11	6	Median	1.1966	0.9909	NaN	1	0	Median	0.90472	1.0592	26.583	4	3	Median	0.97354	0.96069	0.97585	2	0	Median	0.98408	1.0567	20.315	4	3	Median	2369800000	1167000000	1202800000	515240000	224010000	291230000	746620000	402930000	343700000	456510000	251000000	205500000	651440000	289060000	362380000	5547	1747	5239	34474;34475;34476;34477;34478;34479;34480;34481;34482;34483;34484	47192;47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207;47208	47192			17	
AVAPTMSLHGSHLYTSLPSLGLEQPLALTK	1	Unmodified	3131.6689	0.66890639	2495	Q14135	VGLL4	Transcription cofactor vestigial-like protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	98.913	98.815	4	0.0010658	82100	160511_QHF_FH_JSI10i_3	30.855	28.449			0.96029	0.99492	14.772	4	2	Median	1.2126	0.99187	NaN	1	0	Median	0.97612	1.093	NaN	1	0	Median	0.81385	0.77453	NaN	1	1	Median	0.94473	0.99799	NaN	1	1	Median	113490000	58795000	54695000	18615000	10927000	7688300	21745000	10484000	11262000	25992000	17614000	8378200	47138000	19771000	27367000	5548	2495	5240	34485;34486;34487;34488	47209;47210;47211;47212;47213;47214	47211			6	
AVAQAGTVGTLLIVK	1	Unmodified	1439.8712	0.87116466	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.51	1	4	2					7	2	6	4	4	2	76.15	70.972	2;3	9.1062E-35	64151	160511_QHF_FH_JSI9i_2	162.49	143.74			0.72691	0.82256	21.926	11	11	Median	0.99929	0.86104	27.249	3	3	Median	0.76999	0.87181	9.0703	3	3	Plateau	0.82692	0.82256	36.045	3	3	Median	0.6463	0.70412	13.437	2	2	Median	161230000	93080000	68151000	36165000	22365000	13800000	33833000	21019000	12814000	28686000	17395000	11292000	62547000	32302000	30245000	5549	2817	5241	34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500;34501;34502;34503;34504	47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225;47226;47227;47228;47229;47230	47222			16	
AVAQALEVIPR	0	Unmodified	1165.6819	0.68190733	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.01	7	8	4				6	4		6	7	8	8	64.246	60.154	2;3	9.9985E-30	52036	160511_QHF_FH_JSI11i_2	190.88	146.43			0.96867	1.0069	25.896	27	4	Median	1.1817	1.0063	25.202	5	1	Median	0.84575	1.0069	26.357	7	1	Median	0.9831	0.98062	28.355	8	1	Median	1.0303	1.1316	23.105	7	1	Median	9232400000	4710300000	4522100000	2064800000	1077600000	987230000	2017500000	1071500000	946010000	3074100000	1481200000	1592900000	2076000000	1080100000	995940000	5550	1655	5242	34505;34506;34507;34508;34509;34510;34511;34512;34513;34514;34515;34516;34517;34518;34519;34520;34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533	47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244;47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271;47272	47259			41	
AVASAAAALVLK	1	Unmodified	1083.6652	0.66519463	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.71	3	4	4					2		2	4	4	3	64.083	61.661	2	2.432E-16	54192	160511_QHF_FH_JSI9i_2	166.19	105.75			1.1202	1.0679	9.9477	12	0	Median	1.1939	0.99474	5.7362	2	0	Median	0.91836	1.0679	11.872	4	0	Median	1.1337	1.0968	5.7195	4	0	Median	1.039	1.0964	18.923	2	0	Median	1806100000	778760000	1027300000	272650000	127670000	144980000	271460000	134730000	136730000	453480000	172310000	281170000	808520000	344060000	464460000	5551	5616	5243	34534;34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545;34546	47273;47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288	47282			16	
AVASDFYLR	0	Acetyl (Protein N-term)	1082.5397	0.53965977	3963	Q96A72	MAGOHB	Protein mago nashi homolog 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	3	2	1	76.954	73.07	2	8.7071E-10	67496	160511_QHF_FH_JSI12i_1	163.77	126.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5552	3963	5244	34547;34548;34549;34550;34551;34552;34553	47289;47290;47291;47292;47293;47294;47295;47296	47290			8	
AVASEIFK	1	Unmodified	863.47527	0.4752686	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.049	38.598	2	0.0074189	33021	160511_QHF_FH_JSI11i_2	69.198	33.012			0.93886	0.96258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93886	0.96258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	187680000	88579000	99105000	0	0	0	0	0	0	187680000	88579000	99105000	0	0	0	5553	100	5245	34554	47297	47297			1	
AVASLPPEQMFELMK	1	Unmodified	1689.847	0.8470001	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								3	2	2	2	97.685	97.5	2	0.00011296	85509	160511_QHF_FH_JSI11i_2	111.52	87.181			1.028	0.98973	13.051	8	5	Median	1.0506	0.92289	6.705	3	2	Median	0.81443	1.0085	NaN	1	0	Median	1.195	1.1639	17.857	2	1	Median	0.87023	0.92629	7.7333	2	2	Median	188220000	95445000	92779000	58977000	31900000	27077000	19753000	10542000	9210500	64466000	26605000	37861000	45028000	26398000	18630000	5554	1401;4636	5246	34555;34556;34557;34558;34559;34560;34561;34562;34563	47298;47299;47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312;47313	47309			16	
AVASLSVK	1	Unmodified	773.4647	0.46470391	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.19	1	9	2				2			3	4	3	4	26.251	24.203	2	0.0095908	19983	160511_QHF_FH_JSI11i_2	64.265	37.302			1.4199	1.4496	54.845	14	5	Median	1.7137	1.4629	29.905	3	0	Plateau	1.1968	1.4245	38.883	4	2	Median	1.7232	1.7671	42.03	3	2	Plateau	1.9498	2.1015	88.847	4	1	Median	2829100000	978960000	1850200000	922180000	374360000	547830000	453820000	165500000	288320000	690420000	206650000	483770000	762690000	232450000	530230000	5555	1016	5247	34564;34565;34566;34567;34568;34569;34570;34571;34572;34573;34574;34575;34576;34577	47314;47315;47316;47317;47318;47319;47320;47321;47322;47323	47320			10	
AVASPEATVSQTDENK	1	Unmodified	1645.7795	0.7795087	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	26.59	26.017	2	8.519E-08	22431	160511_QHF_FH_JSI9i_1	133.32	116.69			1.1079	0.984	33.545	4	4	Median	1.09	0.88787	NaN	1	1	Median	0.60061	0.68234	NaN	1	1	Median	1.1262	1.0905	NaN	1	1	Median	1.5234	1.51	NaN	1	1	Median	73747000	33196000	40550000	16536000	6482400	10054000	25087000	16159000	8928200	18717000	6567000	12150000	13407000	3988300	9418200	5556	3011	5248	34578;34579;34580;34581;34582;34583	47324;47325;47326;47327;47328;47329	47328			6	
AVASQLDCNFLK	1	Unmodified	1364.6758	0.67583567	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	59.172	58.387	2	1.0265E-05	49871	160511_QHF_FH_JSI12i_2	125.48	106.7			1.3549	1.1309	26.29	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.5235	1.8661	NaN	1	1	Median	1.1797	1.1517	3.7852	2	0	Median	1.5472	1.754	NaN	1	1	Median	268960000	121240000	147730000	0	0	0	45263000	17979000	27284000	171790000	81500000	90292000	51909000	21756000	30154000	5557	2006	5249	34584;34585;34586;34587	47330;47331;47332;47333	47330			4	
AVATAAAVLAALGGALWLAAR	0	Acetyl (Protein N-term)	1978.1364	0.13638091	4842	Q9HBH5	RDH14	Retinol dehydrogenase 14	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	13.2	2.32				2	1				2	1		2	2	107.79	98.54	2	2.0369E-86	56752	160513_QHF_FH_JSI9Kac_6	218.85	201.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5558	4842	5250	34588;34589;34590;34591;34592	47334;47335;47336;47337;47338	47337			5	
AVATVGPISVAIDAGHESFLFYK	1	Unmodified	2391.2474	0.2474475	875	P07711	CTSL	Cathepsin L1;Cathepsin L1 heavy chain;Cathepsin L1 light chain	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	101.24	101.25	3	1.4318E-38	87887	160511_QHF_FH_JSI12i_3	192.81	179.13			0.87393	0.84978	7.3783	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96593	0.89529	NaN	1	0	Median	0.79069	0.80658	NaN	1	0	Median	276700000	133000000	143710000	0	0	0	0	0	0	78164000	37221000	40943000	198540000	95777000	102760000	5559	875	5251	34593;34594	47339	47339			1	
AVATWHANTER	0	Unmodified	1254.6105	0.6105333	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				16.76	15.646	2	0.00090543	12493	160511_QHF_FH_JSI9i_3	67.563	60.083			1.257	1.0423	NaN	1	0	Median	1.257	1.0423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17329000	8052800	9276000	17329000	8052800	9276000	0	0	0	0	0	0	0	0	0	5560	1736	5252	34595	47340	47340			1	
AVATYHANTER	0	Unmodified	1231.5945	0.59454889	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		2	1	1	9.8189	7.2209	2;3	7.5257E-07	6398	160511_QHF_FH_JSI10i_3	113.22	75.492			0.93723	1.0047	9.1605	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85029	0.9929	9.1862	2	0	Median	0.97235	0.95274	NaN	1	0	Median	1.0538	1.1313	NaN	1	0	Median	171500000	88264000	83232000	0	0	0	147120000	73147000	73968000	5080300	2976900	2103500	19300000	12140000	7160300	5561	1737	5253	34596;34597;34598;34599	47341;47342;47343;47344	47341			2	
AVAVDLGNR	0	Unmodified	913.49813	0.49812931	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	29.332	28.604	2	0.004278	25433	160511_QHF_FH_JSI10i_1	57.047	25.112			1.0127	1.1093	36.573	7	1	Median	1.7295	1.4526	81.95	2	1	Median	0.85604	1.0263	NaN	1	0	Median	1.1641	1.1422	14.012	2	0	Median	1.0914	1.1947	10.477	2	0	Median	412240000	188820000	223430000	77561000	33522000	44039000	78166000	43670000	34496000	142520000	61736000	80783000	114000000	49887000	64108000	5562	3709	5254	34600;34601;34602;34603;34604;34605;34606	47345;47346;47347;47348;47349;47350;47351	47349			7	
AVAVDLGNRK	1	Unmodified	1041.5931	0.59309232	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			21.143	19.939	2	0.010245	16356	160511_QHF_FH_JSI10i_3	55.549	32.121			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5563	3709	5255	34607	47352	47352			1	
AVAVESIHR	0	Unmodified	980.54033	0.54032847	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		17.036	17.036	3	0.0047956	14164	160511_QHF_FH_JSI11i_3	34.803	19.141			0.96441	0.91217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96441	0.91217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131810000	73254000	58559000	0	0	0	0	0	0	131810000	73254000	58559000	0	0	0	5564	3262	5256	34608	47353	47353			1	
AVAVVVDPIQSVK	1	Unmodified	1323.7762	0.77620165	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.15	6	1	1			3	5			3	5	2	6	69.931	65.224	2	5.368E-08	34691	160513_QHF_FH_JSI11Kac_4	111.65	67.343			0.85578	0.9175	29.063	14	10	Median	1.0332	0.84854	35.416	3	3	Plateau	0.7936	0.92942	32.055	5	2	Median	0.94025	0.913	20.444	2	1	Median	0.93151	1.0032	20.397	4	4	Median	1886300000	966680000	919670000	499490000	235780000	263710000	402180000	238770000	163410000	307950000	153980000	153970000	676720000	338150000	338570000	5565	144	5257	34609;34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624	47354;47355;47356;47357;47358;47359;47360;47361;47362;47363;47364;47365;47366;47367;47368;47369;47370;47371	47361			18	
AVAVWGIGTPGGPQDPQPGLTAHVVSAGGR	0	Unmodified	2851.4729	0.47292419	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			79.812	78.452	3	2.1365E-06	65781	160511_QHF_FH_JSI10i_3	52.685	45.732			1.0068	0.9781	15.847	2	1	Median	1.316	1.0941	NaN	1	0	Median	0.77019	0.87441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24887000	15393000	9493800	12991000	7266100	5724900	11896000	8126700	3769000	0	0	0	0	0	0	5566	4878	5258	34625;34626;34627	47372;47373;47374;47375	47372			4	
AVCALLNSGGGIIK	1	Unmodified	1371.7544	0.75442035	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.945	66.649	2	0.0081339	57725	160511_QHF_FH_JSI12i_3	87.298	69.434			1.313	1.333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.313	1.333	NaN	1	0	Median	34240000	11518000	22722000	0	0	0	0	0	0	0	0	0	34240000	11518000	22722000	5567	2279	5259	34628	47376	47376			0	
AVCLLTGASR	0	Unmodified	1046.5543	0.55426398	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	39.032	37.909	2	2.0604E-06	32166	160511_QHF_FH_JSI12i_3	114.2	87.318			1.0013	0.90307	13.305	3	2	Median	1.0343	0.90307	NaN	1	0	Median	0.70768	0.85265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0013	1.0989	NaN	1	1	Median	121810000	64589000	57222000	35896000	14839000	21058000	52485000	32269000	20216000	0	0	0	33431000	17482000	15949000	5568	1433	5260	34629;34630;34631;34632;34633;34634;34635	47377;47378;47379;47380;47381;47382;47383	47383			7	
AVCMLSNTTAIAEAWAR	0	Oxidation (M)	1879.8921	0.89205282	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		10	8						4	1	5	6	10	75.654	73.44	2;3	5.0131E-41	66018	160511_QHF_FH_JSI11i_3	210.41	194.15			0.99246	1.0765	20.814	19	6	Median	NaN	NaN	NaN	0	0	Median	0.82801	1.0286	18.664	5	1	Median	0.93031	0.87277	14.56	5	2	Median	1.1387	1.1785	16.844	9	3	Median	807190000	398640000	408550000	5186700	0	5186700	158760000	88695000	70068000	244810000	126500000	118300000	398440000	183450000	214990000	5569	2073;2074	5261	34636;34637;34638;34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650;34651;34652;34653;34654;34655;34656;34657	47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395;47396;47397;47398;47399;47400;47401;47402;47403;47404;47405;47406;47407;47408;47409;47410;47411	47386		1739	27	
AVCMLSNTTAIAEAWAR	0	Unmodified	1863.8971	0.89713819	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	5.43	5	13	12						7	10	10	7	10	88.419	86.319	2;3	5.5359E-239	41691	160513_QHF_FH_JSI9Kac_6	335.2	291.3			1.0863	1.0664	21.281	33	3	Median	1.43	1.2115	17.472	8	3	Median	0.83138	0.96933	14.347	10	0	Median	0.87781	0.82409	20.723	7	0	Median	1.1165	1.1667	21.505	8	0	Median	7340500000	3376000000	3964400000	669170000	285270000	383890000	1928400000	1033800000	894580000	2406900000	1079200000	1327700000	2336000000	977800000	1358200000	5570	2073;2074	5261	34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693;34694	47412;47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425;47426;47427;47428;47429;47430;47431;47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443;47444;47445;47446;47447;47448;47449;47450;47451;47452;47453;47454;47455;47456;47457;47458;47459;47460;47461;47462;47463;47464;47465	47450			53	
AVCMLSNTTAVAEAWAR	0	Unmodified	1849.8815	0.88148813	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.32	1	9	6						7	3	8	6	6	81.4	78.367	2;3	1.5705E-189	41038	160513_QHF_FH_JSI10Kac_6	305.84	277.66			0.9363	1.0457	27.768	22	0	Median	1.2731	1.0923	32.61	3	0	Median	0.77945	0.93489	8.0771	7	0	Median	0.86946	0.85884	9.738	6	0	Median	1.1717	1.2542	28.699	6	0	Median	2616200000	1347900000	1268300000	199510000	86230000	113280000	680340000	378830000	301510000	1072900000	558780000	514130000	663450000	324040000	339400000	5571	4359	5262	34695;34696;34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716;34717	47466;47467;47468;47469;47470;47471;47472;47473;47474;47475;47476;47477;47478;47479;47480;47481;47482;47483;47484;47485;47486;47487;47488;47489;47490;47491;47492;47493;47494;47495;47496;47497;47498;47499	47499			30	
AVCMLSNTTAVAEAWAR	0	Oxidation (M)	1865.8764	0.87640275	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	67.814	67.517	2	4.6792E-40	58422	160511_QHF_FH_JSI12i_3	163.99	149.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5572	4359	5262	34718	47500	47500		2457	1	
AVDAGLNVMPYIK	1	Unmodified	1389.7326	0.73262227	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	76.291	75.866	2	2.5431E-06	69140	160511_QHF_FH_JSI12i_1	121.36	107.36			0.86762	0.85585	14.644	7	6	Median	0.86762	0.69959	NaN	1	0	Median	0.80955	0.96461	16.918	2	2	Median	0.86431	0.83753	12.91	2	2	Median	0.84629	0.88537	10.69	2	2	Median	641440000	377410000	264030000	41849000	25726000	16123000	271340000	156580000	114760000	156950000	84158000	72790000	171300000	110940000	60358000	5573	1194	5263	34719;34720;34721;34722;34723;34724;34725	47501;47502;47503;47504;47505;47506;47507;47508	47504			8	
AVDALLTHCK	1	Unmodified	1126.5805	0.58047873	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	30.811	29.502	2	0.0078309	24913	160511_QHF_FH_JSI12i_2	50.978	32.753			1.1083	1.175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1083	1.175	NaN	1	0	Median	23369000	11581000	11789000	0	0	0	0	0	0	0	0	0	23369000	11581000	11789000	5574	596	5264	34726	47509	47509			1	
AVDDGVNTFK	1	Unmodified	1064.5138	0.51383895	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.02	4	2				4	2			2	4	3	3	31.859	26.627	2	6.6837E-44	16637	160513_QHF_FH_JSI12Kac_3	205.14	158.06			0.9933	1.0145	20.377	11	2	Median	1.4095	1.1647	19.515	2	1	Median	0.81071	0.96511	18.978	3	0	Median	0.98853	0.971	30.401	3	1	Median	1.0241	1.1096	1.1086	3	0	Median	7609800000	3775900000	3833900000	1679400000	559980000	1119400000	1879900000	994630000	885250000	1706000000	1024600000	681400000	2344500000	1196700000	1147800000	5575	1721	5265	34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738	47510;47511;47512;47513;47514;47515;47516;47517;47518;47519;47520;47521;47522;47523;47524;47525;47526;47527	47522			18	
AVDDGVNTFKVLTR	1	Acetyl (K)	1575.8257	0.82567103	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	0.816						2	2	5		1	3	2	3	78.318	68.272	2	2.0097E-23	36116	160513_QHF_FH_JSI12Kac_4	147.87	125.67			0.93778	1.0997	12.953	7	0	Median	1.3338	1.1163	NaN	1	0	Median	0.76482	0.9148	11.154	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0632	1.1971	11.378	3	0	Median	84970000	45010000	39961000	4157600	1975800	2181800	42366000	24391000	17975000	2649600	1256900	1392600	35797000	17386000	18411000	5576	1721	5266	34739;34740;34741;34742;34743;34744;34745;34746;34747	47528;47529;47530;47531;47532;47533;47534;47535;47536;47537;47538;47539;47540;47541;47542;47543	47535	1731		16	
AVDDLNLHSYSNLPIWVNK	1	Unmodified	2197.1168	0.11676768	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.754	88.142	3	2.9707E-25	78382	160511_QHF_FH_JSI10i_2	179.46	167.5			0.85361	0.93941	7.6984	4	0	Median	1.1031	0.9388	NaN	1	0	Median	0.78546	0.97757	NaN	1	0	Median	0.92767	0.94002	NaN	1	0	Median	0.72778	0.81992	NaN	1	0	Median	405070000	210650000	194420000	81424000	34545000	46879000	102990000	56373000	46613000	127580000	72278000	55304000	93082000	47454000	45628000	5577	2517	5267	34748;34749;34750;34751	47544;47545;47546	47546			3	
AVDEAADALLK	1	Unmodified	1114.587	0.58700389	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	2	3	1	54.034	51.113	2	4.1222E-05	26557	160513_QHF_FH_JSI10Kac_3	99.815	51.021			0.88127	0.87826	25.245	8	6	Median	0.94772	0.7698	33.245	2	2	Median	0.63212	0.74867	7.9738	2	1	Median	0.91868	0.89064	27.525	3	2	Plateau	1.0373	1.1016	NaN	1	1	Median	3870000000	2040900000	1829100000	1285200000	723220000	562010000	621230000	332300000	288940000	1325300000	672600000	652720000	638240000	312810000	325430000	5578	2780	5268	34752;34753;34754;34755;34756;34757;34758;34759	47547;47548;47549;47550;47551;47552;47553;47554	47553			8	
AVDEFYSK	1	Unmodified	957.44436	0.4443624	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.547	28.984	2	0.013788	25971	160511_QHF_FH_JSI12i_1	51.066	38.239			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5579	426	5269	34760	47555	47555			1	
AVDEMNGK	1	Unmodified	862.38547	0.38546731	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	9.2043	7.5114	2	0.0007734	6010	160511_QHF_FH_JSI9i_1	98.418	72.524			0.87351	0.92767	8.9002	5	0	Median	1.3029	1.0309	NaN	1	0	Median	0.87351	1.0128	NaN	1	0	Median	0.87292	0.83806	NaN	1	0	Median	0.85309	0.90337	3.7543	2	0	Median	3924900000	1884500000	2040400000	1022000000	417730000	604290000	1099500000	588950000	510560000	964970000	469790000	495180000	838400000	408000000	430390000	5580	1009;4688	5270	34761;34762;34763;34764;34765	47556;47557;47558;47559	47558			4	
AVDFAER	0	Unmodified	806.39227	0.39226725	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.73	4	4	4			1	2			2	4	4	5	23.249	21.039	2	0.00062822	12659	160513_QHF_FH_JSI12Kac_4	114.72	84.052			1.0207	1.0599	20.049	14	4	Median	1.277	1.0407	23.868	2	0	Median	1.0276	1.1531	22.146	3	1	Median	1.064	1.0669	27.316	4	2	Median	0.93066	0.99322	10.307	5	1	Median	14102000000	6475700000	7626100000	1823000000	767480000	1055500000	3606800000	1704700000	1902100000	5085100000	2148000000	2937000000	3586900000	1855500000	1731500000	5581	2039	5271	34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780	47560;47561;47562;47563;47564;47565;47566;47567;47568;47569;47570;47571;47572;47573;47574;47575;47576	47575			17	
AVDFLAANESR	0	Unmodified	1191.5884	0.58840088	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		46.754	45.975	2	0.0079942	39540	160511_QHF_FH_JSI11i_2	50.284	33.258			1.1209	1.0097	3.371	2	0	Median	1.2575	1.034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99921	0.98589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74181000	34709000	39473000	25930000	11784000	14146000	0	0	0	48251000	22924000	25327000	0	0	0	5582	5538	5272	34781;34782	47577;47578	47578			2	
AVDGGDPPR	0	Unmodified	882.41954	0.41954463	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.5106	7.8263	2	0.041267	5405	160511_QHF_FH_JSI9i_1	45.972	29.045			0.6336	0.51728	NaN	1	1	Median	0.6336	0.51728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103050000	60933000	42113000	103050000	60933000	42113000	0	0	0	0	0	0	0	0	0	5583	401	5273	34783	47579	47579			1	
AVDGYVKPQIK	2	Acetyl (K)	1258.6921	0.69213767	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	1	0	0	1				By MS/MS	13	0						1							1	56.874	47.7	2	0.00012069	25315	160513_QHF_FH_JSI12Kac_3	94.692	57.998			0.79135	0.87393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79135	0.87393	NaN	1	0	Median	2204700	1560700	643990	0	0	0	0	0	0	0	0	0	2204700	1560700	643990	5584	1530;1750	5274	34784	47580;47581	47580	1550		2	
AVDGYVKPQIK	2	Unmodified	1216.6816	0.68157298	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	1				By MS/MS	3	0			2										2	29.809	29.756	2;3	0.002581	25003	160511_QHF_FH_JSI12i_3	94.692	64.437			1.7822	1.822	11.911	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7822	1.822	11.911	2	2	Median	117130000	46140000	70988000	0	0	0	0	0	0	0	0	0	117130000	46140000	70988000	5585	1530;1750	5274	34785;34786	47582;47583	47582			2	
AVDIPHMDIEALK	1	Unmodified	1450.749	0.74900062	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.34	6	12	9					2		7	7	9	6	74.896	73.383	2;3	1.0784E-15	65392	160511_QHF_FH_JSI10i_2	165.63	140.07			0.89966	0.91008	16.105	26	9	Median	1.1198	0.93107	4.7502	6	4	Median	0.83031	0.99685	25.496	7	2	Median	0.90786	0.90036	11.481	7	1	Median	0.86994	0.92397	14.145	6	2	Median	10937000000	5498500000	5438800000	2250000000	986190000	1263800000	2240500000	1215400000	1025200000	3431100000	1724500000	1706600000	3015700000	1572400000	1443300000	5586	2036	5275	34787;34788;34789;34790;34791;34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813;34814;34815	47584;47585;47586;47587;47588;47589;47590;47591;47592;47593;47594;47595;47596;47597;47598;47599;47600;47601;47602;47603;47604;47605;47606;47607;47608;47609;47610;47611;47612;47613;47614;47615;47616;47617;47618;47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639;47640;47641;47642;47643	47637			60	
AVDIPHMDIEALK	1	Oxidation (M)	1466.7439	0.74391524	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	0			By MS/MS	By MS/MS	14.7	0.471							1	2				1	2	65.563	54.775	3	0.0059824	29607	160513_QHF_FH_JSI11Kac_5	42.209	20.011			1.0389	1.0271	24.5	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0389	1.0271	NaN	1	0	Median	1.0792	1.1672	33.039	2	0	Median	14060000	5680300	8379500	0	0	0	0	0	0	5645600	2391000	3254600	8414200	3289300	5124900	5587	2036	5275	34816;34817;34818	47644;47645;47646	47644		1696	3	
AVDIPHMDIEALKK	2	Unmodified	1578.844	0.84396364	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.41	4.63		8	11						3	5	4	6	7	67.245	65.173	2;3;4	1.0043E-10	56252	160511_QHF_FH_JSI12i_3	151.54	131.16			0.97976	0.96246	22.722	20	2	Median	1.0658	0.96338	10.197	5	0	Plateau	0.91407	1.0965	37.913	4	1	Median	1.0132	0.98232	22.429	5	1	Median	0.92707	1.0717	6.86	6	0	Linear	7641800000	3333900000	4307900000	528320000	272890000	255420000	839430000	420890000	418540000	2585600000	1104800000	1480900000	3688400000	1535400000	2153000000	5588	2036	5276	34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835;34836;34837;34838;34839;34840	47647;47648;47649;47650;47651;47652;47653;47654;47655;47656;47657;47658;47659;47660;47661;47662;47663;47664;47665;47666;47667;47668;47669;47670;47671;47672;47673;47674;47675;47676;47677;47678;47679;47680;47681;47682;47683;47684;47685;47686;47687;47688	47683			40	
AVDIPHMDIEALKK	2	Acetyl (K)	1620.8545	0.85452832	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		81.762	71.292	3	0.00020736	37718	160513_QHF_FH_JSI11Kac_5	100.45	88.071			0.82927	0.88106	56.394	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1578	1.3128	NaN	1	0	Median	0.59393	0.59132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23995000	15716000	8278600	0	0	0	2033000	935500	1097500	21962000	14781000	7181100	0	0	0	5589	2036	5276	34841;34842	47689;47690	47689	2082		2	
AVDIPHMDIEALKK	2	Acetyl (K);Oxidation (M)	1636.8494	0.84944294	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		71.893	61.092	3	0.014747	32625	160513_QHF_FH_JSI11Kac_5	48.177	38.12			0.26243	0.26102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26243	0.26102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24254000	16462000	7791600	0	0	0	0	0	0	24254000	16462000	7791600	0	0	0	5590	2036	5276	34843	47691	47691	2082	1696	1	
AVDIPHMDIEALKK	2	Oxidation (M)	1594.8389	0.83887826	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	47.913	47.672	3	0.00010404	40744	160511_QHF_FH_JSI12i_3	80.507	71.711			0.71714	0.73854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71714	0.73854	NaN	1	0	Median	117590000	74219000	43374000	0	0	0	0	0	0	0	0	0	117590000	74219000	43374000	5591	2036	5276	34844	47692;47693	47692		1696	2	
AVDITTPK	1	Unmodified	843.47018	0.47018322	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	29.272	25.25	2	0.0055642	21650	160511_QHF_FH_JSI9i_1	65.252	27.694			1.0511	1.0208	27.372	7	2	Median	1.0918	0.90135	NaN	1	0	Median	0.65547	0.7786	42.133	2	2	Median	1.2111	1.1737	19.747	2	0	Median	1.0525	1.1188	14.489	2	0	Median	1465700000	818900000	646800000	367970000	188580000	179390000	299050000	176660000	122390000	301810000	158890000	142920000	496870000	294770000	202100000	5592	532	5277	34845;34846;34847;34848;34849;34850;34851;34852	47694;47695;47696;47697;47698;47699;47700	47699			7	
AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF	1	Unmodified	4232.9622	0.96218369	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	3	3	2							1	2	3	2	63.268	62.758	4	3.9895E-13	55696	160511_QHF_FH_JSI11i_3	61.608	57.415			0.90937	0.96596	10.324	8	1	Median	1.0432	0.89623	NaN	1	0	Median	0.82608	0.99176	3.4071	2	0	Median	0.98764	0.96379	14.55	3	0	Median	0.92477	0.94469	12.749	2	1	Median	810310000	416990000	393330000	109730000	53153000	56573000	196250000	114450000	81798000	366980000	174700000	192280000	137360000	74679000	62677000	5593	4260	5278	34853;34854;34855;34856;34857;34858;34859;34860	47701;47702;47703;47704;47705;47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718	47702			18	
AVDLIQKHK	2	Acetyl (K)	1092.6291	0.62914348	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	1	0	0	1			By MS/MS		15.3	0.471								2	1			3		40.099	30.191	2;3	1.0145E-05	17390	160513_QHF_FH_JSI11Kac_5	105.4	75.923			0.058382	0.057426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.058382	0.057426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8910400	8805600	104810	0	0	0	0	0	0	8910400	8805600	104810	0	0	0	5594	1488	5279	34861;34862;34863	47719;47720;47721	47720	1498		3	
AVDLLNYTQWFPIVIFFNPDSR	0	Unmodified	2654.3533	0.35330955	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			102.53	95.652	2;3	6.8662E-37	57223	160513_QHF_FH_JSI10Kac_6	222.42	186.03			1.0184	1.2071	12.641	3	0	Median	1.5412	1.3318	NaN	1	0	Median	0.95698	1.1184	10.79	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	687220000	325610000	361610000	239310000	95880000	143430000	447910000	229730000	218180000	0	0	0	0	0	0	5595	5268	5280	34864;34865;34866	47722;47723;47724;47725	47725			4	
AVDLMTHNYYELLYAFHIYR	0	Oxidation (M)	2547.2257	0.2256662	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.643	82.334	4	1.008E-25	45621	160513_QHF_FH_JSI9Kac_6	148.06	140.44			1.0333	1.0457	10.986	4	0	Median	1.1648	0.9942	NaN	1	0	Median	0.91668	1.1	NaN	1	0	Median	1.2845	1.2285	NaN	1	0	Median	0.91592	0.96342	NaN	1	0	Median	1603700000	706900000	896830000	226970000	103080000	123890000	479830000	224170000	255650000	660810000	266850000	393960000	236130000	112800000	123330000	5596	2303	5281	34867;34868;34869;34870	47726;47727;47728;47729	47727		1900	4	
AVDLMTHNYYELLYAFHIYR	0	Unmodified	2531.2308	0.23075158	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	94.149	85.572	3;4	7.6141E-58	46182	160513_QHF_FH_JSI12Kac_6	199.61	188.62			1.148	1.1648	17.521	5	1	Median	1.148	0.98063	NaN	1	0	Median	0.8409	0.98029	NaN	1	0	Median	1.4529	1.3698	10.454	2	1	Median	1.1023	1.1648	NaN	1	0	Median	5823600000	2664600000	3159000000	624090000	315540000	308550000	3139300000	1524900000	1614400000	1631900000	596910000	1035000000	428290000	227190000	201100000	5597	2303	5281	34871;34872;34873;34874;34875	47730;47731;47732;47733;47734	47733			5	
AVDLVEEESGAPGEEQR	0	Unmodified	1813.833	0.83300084	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	42.894	42.288	2	4.8668E-22	38368	160511_QHF_FH_JSI12i_1	174.73	166.03			0.89584	0.87646	20.206	5	4	Median	1.2973	1.0568	NaN	1	1	Median	0.63006	0.7399	22.161	2	2	Median	0.89584	0.87646	NaN	1	1	Median	1.0083	1.016	NaN	1	0	Median	166960000	79881000	87076000	21280000	7278200	14002000	76284000	42120000	34164000	41040000	17317000	23723000	28353000	13166000	15187000	5598	398	5282	34876;34877;34878;34879;34880;34881	47735;47736;47737;47738;47739;47740;47741	47737			7	
AVDLVEEESGAPGEEQRR	0	Unmodified	1969.9341	0.93411186	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	36.306	35.55	3	4.7484E-06	30932	160511_QHF_FH_JSI9i_2	78.234	61.156			1.1639	1.2829	21.762	5	0	Median	1.1639	1.0013	NaN	1	0	Median	1.1616	1.3842	NaN	1	0	Median	1.4893	1.4704	19.295	2	0	Median	0.92166	1.0239	NaN	1	0	Median	181880000	77817000	104060000	44534000	24288000	20246000	49593000	15808000	33785000	72704000	30140000	42564000	15049000	7581100	7467700	5599	398	5283	34882;34883;34884;34885;34886	47742;47743;47744;47745;47746;47747;47748	47744			7	
AVDNQVYVATASPAR	0	Unmodified	1560.7896	0.78961988	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.419	36.807	2	3.4212E-30	33334	160511_QHF_FH_JSI12i_1	194.24	166.47			1.0095	0.99428	10.139	4	0	Median	1.4231	1.1787	NaN	1	0	Median	0.81058	0.96133	NaN	1	0	Median	1.0127	0.94162	NaN	1	0	Median	1.0064	1.0284	NaN	1	0	Median	227740000	113840000	113900000	45908000	14925000	30983000	55614000	31065000	24549000	69175000	39014000	30161000	57043000	28836000	28207000	5600	4924	5284	34887;34888;34889;34890	47749;47750;47751;47752;47753;47754;47755;47756;47757	47752			9	
AVDNQVYVATASPARDDK	1	Unmodified	1918.9385	0.93846896	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								4	3	2	3	33.307	32.487	2;3	4.589E-23	28947	160511_QHF_FH_JSI10i_1	174.68	151.88			0.93964	0.85741	15.84	9	3	Median	0.95175	0.8017	5.2363	3	2	Median	0.78046	0.93544	17.256	2	0	Median	0.98731	0.96118	16.156	2	1	Median	0.94792	1.0241	24.003	2	0	Median	1143700000	596860000	546830000	231630000	109150000	122480000	273430000	157130000	116300000	334510000	171470000	163030000	304120000	159100000	145020000	5601	4924	5285	34891;34892;34893;34894;34895;34896;34897;34898;34899;34900;34901;34902	47758;47759;47760;47761;47762;47763;47764;47765;47766;47767;47768;47769;47770;47771;47772	47762			15	
AVDPEDDFQR	0	Unmodified	1190.5204	0.52038089	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.718	31.116	2	5.4218E-10	27957	160511_QHF_FH_JSI12i_1	138.98	101.42			0.81384	0.96712	3.7545	4	0	Linear	1.2239	0.9836	NaN	1	0	Median	0.85971	1.015	NaN	1	0	Median	0.95816	0.93218	NaN	1	0	Median	0.88461	0.95092	NaN	1	0	Median	1550600000	812040000	738560000	258490000	121760000	136720000	515170000	270170000	245000000	382530000	200170000	182360000	394410000	219930000	174480000	5602	4322	5286	34903;34904;34905;34906	47773;47774;47775;47776;47777;47778;47779;47780	47776			8	
AVDPKTGR	1	Acetyl (K)	884.47158	0.4715802	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		16.061	8.5842	2	0.0070916	6484	160513_QHF_FH_JSI10Kac_3	82.452	19.735			0.010674	0.011604	237.5	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.0073031	0.0086963	NaN	1	1	Median	0.12095	0.1186	259.42	2	1	Median	NaN	NaN	NaN	0	0	Median	41167000	37117000	4050600	0	0	0	17061000	16851000	209990	24106000	20265000	3840600	0	0	0	5603	1415	5287	34907;34908;34909	47781;47782;47783	47783	1370		3	
AVDPSSVALVTLGSSK	1	Unmodified	1529.8301	0.83008771	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	73.536	73.051	2	4.0814E-10	64848	160511_QHF_FH_JSI9i_1	143.98	124.21			1.2352	1.2793	24.279	6	5	Median	1.1922	0.97534	NaN	1	0	Median	1.7415	2.0204	NaN	1	1	Median	1.264	1.2234	9.077	2	2	Median	1.2352	1.2975	4.7536	2	2	Median	420040000	195030000	225000000	74311000	35701000	38610000	86759000	31933000	54827000	155660000	78569000	77095000	103300000	48829000	54474000	5604	3734	5288	34910;34911;34912;34913;34914;34915	47784;47785;47786;47787;47788;47789;47790	47790			7	
AVDPTSGQLYGLAR	0	Unmodified	1446.7467	0.74669243	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.725	56.07	2	2.4638E-06	50974	160511_QHF_FH_JSI12i_1	127.83	56.139			1.0705	1.1327	4.8497	4	0	Median	1.4361	1.1578	NaN	1	0	Median	1.0244	1.19	NaN	1	0	Median	1.0833	1.0659	NaN	1	0	Median	1.0579	1.1082	NaN	1	0	Median	869030000	430710000	438320000	236730000	101160000	135580000	209140000	113030000	96110000	224350000	114510000	109840000	198800000	102010000	96794000	5605	3734	5289	34916;34917;34918;34919	47791;47792;47793;47794;47795;47796;47797;47798	47794			8	
AVDQHNAEAQDIFGK	1	Unmodified	1641.7747	0.7746981	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	38.577	37.627	3	0.00021238	32152	160511_QHF_FH_JSI11i_2	80.738	68.823			1.2086	1.3621	38.782	3	2	Plateau	0.80132	0.68581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87217	0.86806	NaN	1	1	Median	1.2962	1.4632	NaN	1	0	Median	144050000	67440000	76606000	29923000	16156000	13767000	0	0	0	63723000	30680000	33043000	50400000	20604000	29796000	5606	1779	5290	34920;34921;34922	47799;47800;47801	47801			2	
AVDQSIEK	1	Unmodified	888.45526	0.45526144	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	2	2	13.546	11.138	2	0.0025749	9425	160511_QHF_FH_JSI11i_1	79.059	38.79			1.4182	1.4968	13.694	7	0	Median	1.7755	1.4814	4.1479	2	0	Median	1.4163	1.6526	NaN	1	0	Median	1.4534	1.4314	7.0667	2	0	Median	1.1845	1.2697	23.272	2	0	Median	1034500000	442260000	592240000	306100000	126400000	179700000	246440000	107470000	138970000	273540000	123470000	150070000	208430000	84926000	123500000	5607	2489	5291	34923;34924;34925;34926;34927;34928;34929	47802;47803;47804;47805	47802			4	
AVDSAMELLFLDTFK	1	Acetyl (Protein N-term)	1740.8644	0.86442431	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1.2	0.4	4	1									3	2		104.35	104.31	2	2.0653E-56	95053	160511_QHF_FH_JSI10i_1	197.31	171.88			3.1562	3.3632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.1562	3.3632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21020000	8364200	12656000	0	0	0	9843300	2753400	7089800	11177000	5610700	5565900	0	0	0	5608	3033	5292	34930;34931;34932;34933;34934	47806;47807;47808;47809;47810	47809			5	
AVDSLLNFETVK	1	Unmodified	1334.7082	0.70818166	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	76.008	75.126	2	4.8004E-05	66270	160511_QHF_FH_JSI9i_2	110.39	91.144			0.80529	0.80052	50.221	3	1	Median	2.1424	1.8344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80529	0.80052	NaN	1	0	Median	0.66819	0.74176	NaN	1	0	Median	78990000	40046000	38944000	20435000	4998900	15436000	0	0	0	30189000	17201000	12988000	28366000	17847000	10520000	5609	4880	5293	34935;34936;34937	47811;47812;47813;47814	47812			4	
AVDSLVPIGR	0	Unmodified	1025.5869	0.58694431	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	6.38	4	4	2				5	5		4	5	6	5	58.737	53.193	2	1.9268E-33	29848	160513_QHF_FH_JSI11Kac_4	194.2	114.6			1.0097	1.0241	18.586	19	3	Median	1.2397	1.0225	2.4128	4	0	Median	0.95637	1.1488	11.066	4	1	Median	1.004	0.97475	25.957	6	1	Median	0.944	1.0403	23.261	5	1	Median	14294000000	7093300000	7200900000	2682600000	1195100000	1487500000	3550800000	1918600000	1632200000	4999600000	2419200000	2580300000	3061100000	1560300000	1500800000	5610	1263	5294	34938;34939;34940;34941;34942;34943;34944;34945;34946;34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957	47815;47816;47817;47818;47819;47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838;47839;47840;47841;47842;47843;47844;47845	47828			31	
AVDSQILPK	1	Unmodified	969.5495	0.54949617	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	5.79	5	4	1		2	4	3			2	5	7	5	39.461	34.194	2;3	9.7175E-33	21170	160513_QHF_FH_JSI11Kac_4	195.27	143.92			0.953	1.0211	31.155	19	4	Median	1.2303	1.0362	0.95981	2	0	Median	0.89017	1.021	14.561	5	0	Median	1.0291	1.0211	44.987	7	3	Median	0.86327	0.94315	18.934	5	1	Median	12418000000	5528200000	6890100000	2616700000	1058000000	1558700000	3080100000	1495500000	1584700000	3518800000	1425200000	2093600000	3202700000	1549600000	1653100000	5611	2196	5295	34958;34959;34960;34961;34962;34963;34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976	47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857;47858;47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876	47862			31	
AVDSQILPKIK	2	Acetyl (K)	1252.7391	0.73908786	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				3	1	2	72.042	62.031	2	2.6632E-14	33184	160513_QHF_FH_JSI12Kac_4	148.96	123.02			0.48291	0.5293	58.662	5	0	Median	NaN	NaN	NaN	0	0	Median	1.002	1.1824	26.864	2	0	Median	0.33055	0.32869	NaN	1	0	Median	0.46568	0.50866	5.6256	2	0	Median	48018000	29931000	18086000	0	0	0	13517000	7026000	6491400	21446000	14375000	7071200	13054000	8530900	4523600	5612	2196	5296	34977;34978;34979;34980;34981;34982	47877;47878;47879;47880;47881;47882;47883;47884	47881	2315		8	
AVDTDGVEPMESVLEDR	0	Unmodified	1860.8411	0.84112268	365	O43716	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	72.886	72.311	2	0.00021053	65939	160511_QHF_FH_JSI12i_1	85.258	63.061			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21135000	0	21135000	0	0	0	0	0	0	0	0	0	21135000	0	21135000	5613	365	5297	34983	47885;47886	47886			2	
AVDTLAYLSDGDAR	0	Unmodified	1465.7049	0.7048872	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.455	58.799	2	0.00062548	53554	160511_QHF_FH_JSI12i_1	109.24	93.664			0.84108	0.87706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84108	0.87706	NaN	1	1	Median	75611000	39516000	36095000	0	0	0	0	0	0	0	0	0	75611000	39516000	36095000	5614	4235	5298	34984	47887	47887			1	
AVDTWSWGER	0	Unmodified	1205.5465	0.54653606	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	53.081	52.111	2	1.0811E-05	44886	160511_QHF_FH_JSI11i_2	104.2	88.319			0.96754	1.1122	8.3623	4	1	Median	1.3821	1.1716	NaN	1	0	Median	0.93506	1.1584	NaN	1	0	Median	0.96995	0.97848	NaN	1	0	Median	0.96513	1.0679	NaN	1	1	Median	367720000	181770000	185950000	70684000	35657000	35027000	79780000	39407000	40373000	114990000	54965000	60027000	102270000	51741000	50527000	5615	2271	5299	34985;34986;34987;34988;34989	47888;47889;47890;47891;47892;47893;47894;47895	47892			8	
AVDVFFPPEAQNDFPVAMQISEK	1	Unmodified	2578.2414	0.24137584	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								1	3	3	3	101.44	101.35	2;3	2.714E-30	92095	160511_QHF_FH_JSI10i_1	132.48	129.68			0.86632	0.81126	14.839	9	2	Median	0.9464	0.81126	NaN	1	0	Median	0.88793	1.0314	1.7486	2	0	Median	0.80137	0.75949	14.907	3	1	Median	0.77482	0.79367	13.479	3	1	Median	1751300000	954170000	797170000	108780000	47724000	61058000	604370000	330320000	274050000	457370000	244990000	212380000	580810000	331130000	249680000	5616	2155	5300	34990;34991;34992;34993;34994;34995;34996;34997;34998;34999	47896;47897;47898;47899;47900;47901;47902;47903;47904	47902			9	
AVEAAQLAEDLK	1	Unmodified	1256.6612	0.66123147	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	58.366	57.636	2	1.1737E-05	51953	160511_QHF_FH_JSI10i_1	117.09	68.53			0.71517	0.75555	11.016	3	0	Plateau	0.73188	0.61486	NaN	1	0	Median	0.60183	0.72923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71517	0.75555	NaN	1	0	Median	241250000	152920000	88336000	66458000	42581000	23878000	81027000	50928000	30099000	0	0	0	93767000	59407000	34359000	5617	482	5301	35000;35001;35002;35003	47905;47906;47907	47906			3	
AVEAGLR	0	Unmodified	714.40244	0.40243801	1617	P48200	IREB2	Iron-responsive element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	10.005	9.6481	2	0.0084581	7571	160511_QHF_FH_JSI12i_1	72.355	18.298			0.9633	0.89389	11.376	2	0	Median	0.97536	0.8248	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95139	0.96876	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	537520000	259980000	277540000	215030000	105780000	109250000	0	0	0	322490000	154210000	168290000	0	0	0	5618	1617	5302	35004;35005;35006;35007;35008;35009	47908;47909;47910;47911;47912;47913;47914;47915	47909			8	
AVEAVVNDTSGENK	1	Unmodified	1431.6842	0.68415175	5211	Q9P2D3	HEATR5B	HEAT repeat-containing protein 5B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			23.559	23.275	2	0.00068062	20359	160511_QHF_FH_JSI10i_1	67.456	53.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5619	5211	5303	35010	47916	47916			1	
AVEDDFVEMR	0	Unmodified	1209.5336	0.53358811	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	50.356	49.857	2	0.0030977	45287	160511_QHF_FH_JSI12i_1	70.908	62.15			3.9989	4.0794	2.3653	3	3	Median	NaN	NaN	NaN	0	0	Median	3.421	4.0579	NaN	1	1	Median	4.207	4.0794	NaN	1	1	Median	3.9989	4.2377	NaN	1	1	Median	840150000	99706000	740450000	0	0	0	260680000	34001000	226670000	287710000	27612000	260100000	291770000	38092000	253670000	5620	4416	5304	35011;35012;35013	47917;47918;47919	47918			3	
AVEDEATK	1	Unmodified	861.40798	0.40797689	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	3	2	2	6.9929	3.1958	2	0.0010939	4005	160511_QHF_FH_JSI11i_1	94.114	47.744			0.83237	0.89865	11.11	8	0	Median	1.2149	1.0142	NaN	1	0	Median	0.80878	0.95901	6.3589	3	0	Median	0.84922	0.81198	8.8857	2	0	Median	0.80486	0.83496	6.0202	2	0	Median	1781400000	930090000	851310000	352170000	166060000	186110000	487490000	254960000	232530000	434380000	234550000	199830000	507360000	274520000	232840000	5621	5616	5305	35014;35015;35016;35017;35018;35019;35020;35021	47920;47921;47922;47923;47924;47925;47926;47927	47920			8	
AVEDFLR	0	Unmodified	848.43922	0.43921744	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		47.105	46.687	2	0.019546	42128	160511_QHF_FH_JSI10i_1	58.167	35.545			1.0875	1.1424	2.9176	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0228	1.1662	NaN	1	0	Median	1.1562	1.1191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44467000	19160000	25307000	0	0	0	25637000	9653000	15984000	18830000	9507000	9323400	0	0	0	5622	2900	5306	35022;35023	47928;47929	47929			2	
AVEDIHGLFSLSK	1	Unmodified	1414.7456	0.7456298	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.19	3.34		10	5						1	5	3	5	3	71.169	69.894	2;3	1.0415E-10	61672	160511_QHF_FH_JSI9i_2	121.76	94.623			1.0659	1.0359	8.5256	16	4	Median	1.2412	1.0665	5.8838	5	2	Median	0.86534	1.0648	7.9709	3	0	Plateau	1.1569	1.0746	11.835	5	2	Median	0.88926	1.0219	3.6739	3	0	Median	2235500000	1139800000	1095700000	402090000	180020000	222070000	449010000	260270000	188740000	993860000	489490000	504370000	390540000	210060000	180480000	5623	2502	5307	35024;35025;35026;35027;35028;35029;35030;35031;35032;35033;35034;35035;35036;35037;35038;35039	47930;47931;47932;47933;47934;47935;47936;47937;47938;47939;47940;47941;47942;47943;47944;47945;47946;47947;47948;47949;47950;47951;47952;47953;47954;47955;47956;47957;47958	47939			28	
AVEDINEHITDAQLEAMTELHDR	0	Unmodified	2649.2341	0.23405863	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	75.966	75.354	4	1.256E-08	67290	160511_QHF_FH_JSI11i_3	82.593	79.495			1.1036	1.0606	12.895	6	0	Median	1.1378	1.0028	NaN	1	0	Median	0.7283	0.88176	NaN	1	0	Median	1.0846	1.056	13.269	2	0	Median	1.1036	1.1811	7.2833	2	0	Median	441300000	207820000	233480000	36754000	17835000	18919000	57482000	27244000	30238000	180080000	87875000	92207000	166980000	74864000	92118000	5624	4673	5308	35040;35041;35042;35043;35044;35045	47959;47960;47961;47962;47963;47964;47965;47966;47967	47960			9	
AVEDMLETLQITQS	0	Unmodified	1576.7654	0.76543854	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.067	94.753	2	0.0004021	85968	160511_QHF_FH_JSI10i_1	75.294	65.639			0.82406	1.0108	8.1087	4	0	Linear	1.1738	0.99113	NaN	1	0	Median	0.82193	0.94852	NaN	1	0	Median	1.0763	1.031	NaN	1	0	Median	1.0986	1.1466	NaN	1	0	Median	193560000	97755000	95803000	30323000	14826000	15497000	84721000	46846000	37875000	40236000	20556000	19680000	38278000	15528000	22751000	5625	2597	5309	35046;35047;35048;35049	47968;47969;47970	47970			3	
AVEEAFVPVIK	1	Unmodified	1200.6754	0.67542497	1724	P51003;Q9NRJ5	PAPOLA;PAPOLB	Poly(A) polymerase alpha;Poly(A) polymerase beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.77	67.185	2	1.2279E-05	59767	160511_QHF_FH_JSI9i_1	107.15	65.045			1.0069	1.0837	23.827	4	1	Median	0.8616	0.70265	NaN	1	0	Median	0.91109	1.0317	NaN	1	0	Median	1.2424	1.1828	NaN	1	0	Median	1.1128	1.1383	NaN	1	1	Median	127510000	62021000	65490000	26878000	16172000	10706000	34582000	17260000	17323000	39711000	15750000	23962000	26338000	12839000	13499000	5626	1724	5310	35050;35051;35052;35053	47971;47972;47973;47974;47975;47976;47977	47977			7	
AVEEGLTYK	1	Unmodified	1008.5128	0.51277632	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.52	26.938	2	0.0026708	24061	160511_QHF_FH_JSI12i_1	63.673	35.791			0.8762	0.84932	11.222	4	0	Median	0.88814	0.72964	NaN	1	0	Median	0.68137	0.81816	NaN	1	0	Median	0.99656	0.94908	NaN	1	0	Median	0.86442	0.88168	NaN	1	0	Median	374470000	191570000	182900000	84649000	36460000	48189000	127150000	72207000	54944000	106260000	54439000	51820000	56406000	28461000	27945000	5627	2904	5311	35054;35055;35056;35057	47978;47979;47980;47981;47982;47983;47984	47980			7	
AVEELHK	1	Unmodified	824.43922	0.43921744	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	9.2779	8.8218	2	0.032001	6465	160511_QHF_FH_JSI11i_2	51.335	22.913			0.91145	0.92353	12.871	3	0	Median	0.91145	0.75814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91328	0.92353	NaN	1	0	Median	0.87255	0.96554	NaN	1	0	Median	368950000	185620000	183320000	68635000	35366000	33268000	0	0	0	174140000	84406000	89734000	126170000	65851000	60321000	5628	1016	5312	35058;35059;35060	47985	47985			1	
AVEELHKLLK	2	Acetyl (K)	1220.7129	0.71287311	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.252	51.544	3	0.033608	27891	160513_QHF_FH_JSI11Kac_6	37.681	20.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7830400	7830400	0	0	0	0	0	0	0	7830400	7830400	0	0	0	0	5629	1016	5313	35061	47986	47986			1	
AVEELQSIIK	1	Acetyl (Protein N-term)	1170.6496	0.64960415	3918	Q92990	GLMN	Glomulin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	99.015	98.872	2	1.8138E-11	89484	160511_QHF_FH_JSI10i_1	114.28	104.29			1.1725	1.0891	9.636	4	0	Median	1.2642	1.0454	NaN	1	0	Median	0.92315	1.0814	NaN	1	0	Median	1.1278	1.0968	NaN	1	0	Median	1.2191	1.2971	NaN	1	0	Median	225540000	103320000	122220000	53589000	23403000	30186000	52078000	26499000	25579000	58952000	24490000	34462000	60921000	28927000	31994000	5630	3918	5314	35062;35063;35064;35065	47987;47988;47989;47990;47991;47992;47993;47994;47995;47996;47997	47994			11	
AVEEMNGK	1	Unmodified	876.40112	0.40111738	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.9266	8.5636	2	0.00056048	6485	160511_QHF_FH_JSI12i_1	104.21	68.023			0.98775	1.0368	14.85	4	0	Median	1.0023	0.80487	NaN	1	0	Median	0.9734	1.133	NaN	1	0	Median	1.0896	1.0594	NaN	1	0	Median	0.95075	1.0147	NaN	1	0	Median	1239100000	634540000	604580000	257280000	135030000	122250000	337130000	179370000	157750000	294430000	133930000	160500000	350280000	186210000	164070000	5631	2385	5315	35066;35067;35068;35069	47998;47999;48000;48001	47999			3	
AVEEQIEYLQK	1	Unmodified	1348.6874	0.68744622	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.33	0.471	2	1								1		1	1	44.221	43.452	2;3	1.4268E-13	42115	160511_QHF_FH_JSI9i_1	152.97	115.5			0.70617	0.7144	18.162	3	1	Median	1.1141	0.89733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70617	0.7144	NaN	1	0	Median	0.6089	0.62674	NaN	1	1	Median	240130000	128800000	111330000	60658000	30244000	30413000	0	0	0	79788000	49911000	29878000	99686000	48650000	51036000	5632	2988	5316	35070;35071;35072	48002;48003;48004	48003			3	
AVEGCVSASQAATEDGQLLR	0	Unmodified	2060.9797	0.97968185	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.576	52.912	2	1.0666E-13	48069	160511_QHF_FH_JSI12i_1	144.68	115.91			1.8586	1.982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8586	1.982	NaN	1	0	Median	22299000	7593000	14706000	0	0	0	0	0	0	0	0	0	22299000	7593000	14706000	5633	5616	5317	35073	48005	48005			1	
AVEHINK	1	Unmodified	809.43955	0.43955179	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.59	3	4	4				2	4	4	4	6	5	6	6.3653	2.133	2	4.6955E-09	3287	160511_QHF_FH_JSI12i_3	160.69	46.153			0.86205	0.86495	19.136	21	1	Median	1.015	0.87648	12.623	4	0	Median	0.68709	0.81615	25.246	6	1	Median	0.78834	0.75476	18.379	5	0	Median	0.88965	0.94794	12.689	6	0	Median	38989000000	18667000000	20321000000	6572000000	2854800000	3717200000	7864300000	4249900000	3614400000	12398000000	6139200000	6258400000	12155000000	5423300000	6731400000	5634	854	5318	35074;35075;35076;35077;35078;35079;35080;35081;35082;35083;35084;35085;35086;35087;35088;35089;35090;35091;35092;35093;35094	48006;48007;48008;48009;48010;48011;48012;48013;48014;48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028;48029;48030;48031;48032;48033;48034;48035;48036;48037;48038	48034			33	
AVEHINKTIAPALVSK	2	Acetyl (K)	1731.9883	0.98831969	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.629							2	10	6	1	5	6	6	66.829	56.591	2;3	1.3984E-23	30419	160513_QHF_FH_JSI11Kac_6	157.86	141.33			0.62672	0.68877	203.48	15	3	Median	1.4455	1.2135	NaN	1	0	Median	1.2053	1.4349	16.704	4	0	Median	0.33277	0.32781	261.88	6	2	Median	0.56371	0.60544	250.51	4	1	Median	1653900000	1050100000	603880000	39102000	16694000	22408000	364300000	171230000	193070000	923840000	670240000	253600000	326690000	191890000	134800000	5635	854	5319	35095;35096;35097;35098;35099;35100;35101;35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112	48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050;48051;48052;48053;48054;48055;48056;48057;48058;48059;48060;48061;48062	48042	518;519		24	
AVEHLDDLPGALSELSDLHAHK	1	Unmodified	2366.1866	0.18663816	49	CON__P01966			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		9	9							3	5	5	5	81.945	81.545	3;4;5	2.0716E-37	69170	160511_QHF_FH_JSI12i_3	194.18	183.12		+	0.95818	0.96499	38.308	17	6	Median	0.73038	0.62561	31.713	3	3	Median	0.64946	0.80664	18.614	5	2	Median	1.2362	1.1624	41.811	4	1	Median	0.97716	0.99442	8.141	5	0	Median	3208400000	1523500000	1685000000	42942000	25077000	17866000	218890000	123610000	95285000	849810000	407600000	442200000	2096800000	967170000	1129600000	5636	49	5320	35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130	48063;48064;48065;48066;48067;48068;48069;48070;48071;48072;48073;48074;48075;48076;48077;48078;48079;48080;48081;48082;48083;48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095;48096;48097;48098;48099;48100;48101	48097			39	
AVEHLDDLPGALSELSDLHAHKLR	1	Acetyl (K)	2677.3824	0.38237785	49	CON__P01966			yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	1	2	2	83.22	74.598	4;5	4.1762E-42	40590	160513_QHF_FH_JSI9Kac_6	165.66	149.97		+	0.85117	0.9074	16.063	8	0	Median	1.1079	0.9287	21.238	3	0	Median	0.85239	1.0022	NaN	1	0	Median	0.79333	0.74827	1.1469	2	0	Median	0.90688	0.94826	9.5105	2	0	Median	7476000000	3843800000	3632200000	1761200000	856760000	904480000	1103800000	587350000	516470000	2719400000	1441800000	1277600000	1891500000	957830000	933680000	5637	49	5321	35131;35132;35133;35134;35135;35136;35137;35138	48102;48103;48104;48105;48106;48107;48108;48109	48105	17		7	
AVEHPSVPESPEFVR	0	Unmodified	1678.8315	0.83148469	4935	Q9NQZ5	STARD7	StAR-related lipid transfer protein 7, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		48.203	47.358	3	9.7054E-05	40788	160511_QHF_FH_JSI11i_2	73.386	65.071			1.1436	1.0393	7.183	3	0	Median	1.227	1.0393	NaN	1	0	Median	0.81653	0.99006	NaN	1	0	Median	1.1436	1.1404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163490000	82264000	81226000	50937000	21294000	29643000	52099000	30589000	21510000	60454000	30381000	30073000	0	0	0	5638	4935	5322	35139;35140;35141	48110;48111	48110			1	
AVEIVTSTSAAK	1	Unmodified	1175.6398	0.63976774	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10	5.2	1					3				1	1	2		31.439	30.167	2	0.00076004	16964	160513_QHF_FH_JSI10Kac_3	86.624	67.353			3.1411	2.57	NaN	1	1	Median	3.1411	2.57	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15706000	4374200	11332000	15706000	4374200	11332000	0	0	0	0	0	0	0	0	0	5639	2584	5323	35142;35143;35144;35145	48112;48113;48114;48115	48115			4	
AVELAANTK	1	Unmodified	915.50255	0.50254598	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.93	4	4	4		3	3	2	3	1	5	6	7	6	21.977	17.72	2	1.317E-08	15635	160511_QHF_FH_JSI12i_1	152.47	79.981			1.0288	1.0565	12.313	23	2	Median	1.3195	1.0565	10.882	5	1	Median	0.90982	1.0696	13.985	6	0	Median	1.0313	1.0021	17.161	6	1	Median	0.98835	1.0826	7.9144	6	0	Median	22221000000	9259200000	12962000000	4904200000	1890800000	3013400000	6236100000	2879500000	3356600000	5493000000	2127600000	3365400000	5587900000	2361300000	3226600000	5640	1322	5324	35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160;35161;35162;35163;35164;35165;35166;35167;35168;35169	48116;48117;48118;48119;48120;48121;48122;48123;48124;48125;48126;48127;48128;48129;48130;48131;48132;48133;48134;48135;48136;48137;48138;48139;48140;48141;48142;48143;48144;48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159	48124			44	
AVELDLVPGR	0	Unmodified	1067.5975	0.597509	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		60.956	60.523	2	0.0022124	54931	160511_QHF_FH_JSI11i_1	64.654	37.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5641	2148	5325	35170	48160	48160			1	
AVELLGDIVQNCSLEDSQIEK	1	Unmodified	2359.1577	0.15770579	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	90.887	90.468	3	1.4259E-07	82284	160511_QHF_FH_JSI12i_1	103.9	88.973			1.123	1.09	43.213	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.123	1.09	NaN	1	1	Median	1.1467	1.2051	60.561	2	2	Median	58946000	26663000	32283000	0	0	0	0	0	0	16363000	6364000	9998700	42583000	20299000	22284000	5642	1379	5326	35171;35172;35173	48161;48162;48163	48162			3	
AVELLRK	1	Unmodified	827.52289	0.52288749	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	21.716	20.969	2	0.0092565	17222	160511_QHF_FH_JSI10i_3	107.67	26.292			0.62209	0.63399	145.35	5	5	Median	5.5417	4.5194	NaN	1	1	Median	0.79132	0.92704	231.81	2	2	Median	0.48029	0.46513	NaN	1	1	Median	0.62209	0.63399	NaN	1	1	Median	1478200000	680000000	798190000	353000000	98149000	254850000	461020000	253560000	207460000	485230000	231070000	254160000	178930000	97222000	81712000	5643	1673	5327	35174;35175;35176;35177;35178	48164;48165;48166;48167;48168	48165			5	
AVELNPK	1	Unmodified	769.4334	0.43340378	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.5	6.5	2						2					1	3	22.401	17.118	2	0.013061	14781	160511_QHF_FH_JSI12i_1	71.715	31.612			0.80397	0.86774	30.94	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0156	0.99256	NaN	1	0	Median	0.65243	0.69086	32.238	2	1	Median	499700000	336610000	163090000	0	0	0	0	0	0	9421700	4484700	4937000	490270000	332130000	158150000	5644	611	5328	35179;35180;35181;35182	48169;48170;48171;48172	48169			4	
AVELNPKYVK	2	Acetyl (K)	1201.6707	0.67067394	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.495						4	3				2	2	3	58.983	49.02	2	0.0029352	26145	160513_QHF_FH_JSI12Kac_3	76.827	38.74			1.0231	1.0855	141.95	6	2	Median	NaN	NaN	NaN	0	0	Median	3.7797	4.4602	171.37	2	1	Median	0.44754	0.4388	NaN	1	0	Median	0.22339	0.24317	88.56	3	1	Plateau	36388000	22886000	13502000	0	0	0	9415600	3445500	5970100	17081000	11497000	5584200	9890800	7943300	1947500	5645	611	5329	35183;35184;35185;35186;35187;35188;35189	48173;48174;48175;48176;48177;48178;48179;48180	48177	314		8	
AVEMAAQR	0	Unmodified	874.43309	0.43308621	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	12.74	10.272	2	0.00020122	8665	160511_QHF_FH_JSI9i_1	120.49	79.636			0.99904	1.046	16.35	12	0	Median	1.4519	1.1839	17.35	3	0	Median	0.96154	1.1435	21.504	3	0	Median	0.98745	0.98132	14.208	3	0	Median	0.99456	1.0499	3.489	3	0	Median	1787400000	955860000	831540000	344700000	152920000	191780000	482900000	274930000	207980000	469640000	267000000	202650000	490150000	261020000	229130000	5646	23	5330	35190;35191;35192;35193;35194;35195;35196;35197;35198;35199;35200;35201	48181;48182;48183;48184;48185;48186;48187;48188;48189;48190;48191;48192;48193;48194;48195	48192			15	
AVEMTDQLMVPTLGSQEGAFENVR	0	Unmodified	2621.2465	0.24653758	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	94.53	94.36	3	0.00010403	85415	160511_QHF_FH_JSI10i_1	48.489	45.436			0.65167	0.71806	3.6299	2	1	Median	NaN	NaN	NaN	0	0	Median	0.61985	0.73673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68512	0.69987	NaN	1	1	Median	69099000	44214000	24885000	0	0	0	43397000	25766000	17631000	0	0	0	25703000	18448000	7254300	5647	2947	5331	35202;35203	48196;48197	48197			2	
AVENGSEALMILDDQTNK	1	Unmodified	1946.9255	0.92552101	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			71.989	71.777	3	0.00019302	65042	160511_QHF_FH_JSI10i_1	69.024	59.745			1.1088	1.3399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1088	1.3399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79879000	34253000	45626000	0	0	0	79879000	34253000	45626000	0	0	0	0	0	0	5648	2137	5332	35204	48198	48198			1	
AVENINNTLGPALLQK	1	Unmodified	1693.9363	0.93628412	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	3	2	71.366	70.897	2;3	1.7319E-05	62195	160511_QHF_FH_JSI11i_2	85.845	79.742			0.94147	1.1227	35.498	7	4	Median	1.4587	1.1641	NaN	1	0	Median	0.8891	1.0343	11.597	2	1	Median	0.93584	0.90246	41.111	2	1	Median	1.2624	1.256	67.442	2	2	Median	189540000	85552000	103980000	25225000	9579900	15645000	68190000	31562000	36627000	58589000	29587000	29002000	37534000	14823000	22710000	5649	1044	5333	35205;35206;35207;35208;35209;35210;35211;35212	48199;48200;48201;48202;48203;48204;48205;48206	48206			8	
AVENSSTAIGIR	0	Unmodified	1216.6412	0.64116473	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.46	4	6	1				3	4	1	4	5	5	5	33.574	29.206	2	3.3872E-31	24745	160511_QHF_FH_JSI12i_2	185.71	120.46			0.98067	1.0374	8.4261	14	3	Median	1.2828	1.0893	13.123	3	0	Median	0.85125	1.0073	11.393	4	1	Median	1.0321	1.0467	7.2158	4	1	Median	0.95753	1.0303	0.9724	3	1	Plateau	5023000000	2525600000	2497400000	931660000	431480000	500170000	1178500000	640650000	537840000	1390100000	697530000	692530000	1522800000	755960000	766850000	5650	1266	5334	35213;35214;35215;35216;35217;35218;35219;35220;35221;35222;35223;35224;35225;35226;35227;35228;35229;35230;35231	48207;48208;48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234	48209			28	
AVENYLIQMAR	0	Unmodified	1306.6704	0.67035637	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.79	6.25		4	4				3	4	4	4	5	5	5	72.117	66.029	2	5.4024E-46	35585	160513_QHF_FH_JSI11Kac_6	208.03	173.77			1.107	1.1353	14.388	19	1	Median	1.4411	1.2289	9.573	4	0	Median	0.89711	1.0624	17.261	5	1	Median	1.107	1.1167	14.229	5	0	Median	1.0107	1.0719	16.182	5	0	Median	5150400000	2609600000	2540700000	986340000	437890000	548450000	1626700000	879670000	746980000	1250900000	696730000	554160000	1286500000	595330000	691160000	5651	196	5335	35232;35233;35234;35235;35236;35237;35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249;35250	48235;48236;48237;48238;48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249;48250;48251;48252;48253;48254;48255;48256;48257;48258;48259;48260	48243			22	
AVENYLIQMAR	0	Oxidation (M)	1322.6653	0.66527099	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	2.78		1				3	4	7	9	4	8	5	7	57.814	48.18	2	4.3232E-20	24479	160513_QHF_FH_JSI12Kac_5	168.83	137.33			1.0003	1.0888	11.967	24	6	Median	1.2609	1.0746	15.108	4	2	Median	0.91808	1.0843	9.1558	8	2	Median	0.98578	0.97095	10.818	5	0	Median	1.0525	1.1271	14.391	7	2	Median	844940000	418900000	426050000	164780000	75853000	88926000	244310000	126610000	117700000	132440000	62913000	69523000	303420000	153520000	149900000	5652	196	5335	35251;35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274	48261;48262;48263;48264;48265;48266;48267;48268;48269;48270;48271;48272;48273;48274;48275;48276;48277;48278;48279;48280;48281;48282;48283;48284;48285;48286;48287;48288;48289;48290	48277		80	28	
AVEQGGAFSNPETLDLYR	0	Unmodified	1965.9432	0.94321999	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.785	69.235	2	1.6704E-52	63105	160511_QHF_FH_JSI12i_1	212.24	181.35			0.99293	1.0156	11.324	4	2	Median	1.3617	1.087	NaN	1	0	Median	0.70498	0.83959	NaN	1	1	Median	1.0139	0.98935	NaN	1	1	Median	0.9724	1.0425	NaN	1	0	Median	180080000	91594000	88482000	40089000	17602000	22487000	55066000	32930000	22136000	40864000	19246000	21618000	44058000	21816000	22242000	5653	3335	5336	35275;35276;35277;35278	48291;48292;48293;48294;48295;48296	48293			6	
AVESGVPQPPDPPVQRDEEEEK	1	Unmodified	2431.1503	0.15031223	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	3	1	1	44.317	43.6	3	9.1785E-07	39438	160511_QHF_FH_JSI11i_1	77.681	70.059			0.7965	0.74402	22.438	6	5	Median	0.80556	0.67381	15.113	2	2	Median	0.78879	0.93362	33.2	2	2	Median	0.86696	0.82814	NaN	1	0	Median	0.66695	0.71386	NaN	1	1	Median	510680000	284480000	226190000	108830000	57581000	51250000	156670000	88047000	68619000	153050000	96429000	56619000	92131000	42425000	49706000	5654	5205	5337	35279;35280;35281;35282;35283;35284;35285	48297;48298;48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309	48299			13	
AVESIQAEDESAK	1	Unmodified	1375.6467	0.64670362	3235	Q7L5Y9	MAEA	Macrophage erythroblast attacher	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	4	5.2	3					1					1	2	1	21.978	21.672	2	0.0053609	13053	160513_QHF_FH_JSI11Kac_3	62.823	42.519			1.2922	1.2552	17.788	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2629	1.4361	NaN	1	0	Median	1.2922	1.2552	NaN	1	0	Median	1.744	1.7857	NaN	1	0	Median	111040000	52914000	58128000	0	0	0	34782000	19167000	15616000	42794000	21394000	21401000	33465000	12354000	21112000	5655	3235	5338	35286;35287;35288;35289	48310;48311	48311			1	
AVESLMAANEEK	1	Unmodified	1290.6126	0.61256672	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			35.046	34.693	2	7.0215E-05	30343	160511_QHF_FH_JSI9i_2	85.958	48.483			1.6608	1.9622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6608	1.9622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123320000	58830000	64494000	0	0	0	123320000	58830000	64494000	0	0	0	0	0	0	5656	3353	5339	35290;35291	48312;48313	48313			1	
AVETLLDLIMK	1	Unmodified	1244.705	0.70501054	106	O00194	RAB27B	Ras-related protein Rab-27B	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	102.16	102.04	2	1.4725E-07	87964	160511_QHF_FH_JSI12i_2	123.86	88.508			1.0671	1.2523	48.272	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73021	0.89014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5594	1.7617	NaN	1	0	Median	89970000	46338000	43632000	0	0	0	39489000	26308000	13180000	0	0	0	50482000	20029000	30452000	5657	106	5340	35292;35293	48314	48314			1	
AVETPPLSSVNLLEGLSR	0	Unmodified	1881.0207	0.020742027	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	2	2	1	99.622	99.521	2;3	3.3534E-08	87335	160511_QHF_FH_JSI11i_2	128.54	106.5			0.92639	0.97159	48.726	6	1	Median	1.1546	1.0189	100.52	2	1	Median	0.76296	0.86638	NaN	1	0	Median	1.1761	1.1628	9.2053	2	0	Median	0.7317	0.72433	NaN	1	0	Median	109600000	56652000	52948000	32799000	18058000	14741000	23885000	13272000	10613000	40200000	17926000	22274000	12716000	7396000	5320000	5658	2591	5341	35294;35295;35296;35297;35298;35299;35300;35301	48315;48316;48317;48318;48319;48320;48321;48322;48323;48324;48325;48326;48327;48328	48327			14	
AVETTAQSDNK	1	Unmodified	1162.5466	0.54659564	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.7013	6.0588	2	0.00013336	3823	160511_QHF_FH_JSI9i_1	95.642	50.561			2.3176	1.9217	NaN	1	1	Median	2.3176	1.9217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166750000	54986000	111770000	166750000	54986000	111770000	0	0	0	0	0	0	0	0	0	5659	1479	5342	35302	48329	48329			1	
AVEVQGPSLESGDHGK	1	Unmodified	1608.7744	0.77436375	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	4.94	5	11					4			5	6	5	4	32.35	29.725	2;3	7.9155E-08	25080	160511_QHF_FH_JSI11i_2	134.88	125.43			0.91495	0.97745	36.654	19	9	Median	1.0927	0.9193	67.502	4	2	Median	0.77605	0.93281	23.955	6	5	Median	1.0516	1.0689	34.962	5	2	Median	0.96627	1.0533	22.072	4	0	Median	1846300000	930700000	915640000	303100000	138320000	164770000	583050000	338590000	244460000	519520000	242710000	276810000	440680000	211080000	229600000	5660	2286	5343	35303;35304;35305;35306;35307;35308;35309;35310;35311;35312;35313;35314;35315;35316;35317;35318;35319;35320;35321;35322	48330;48331;48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352;48353;48354;48355;48356;48357;48358;48359	48352			30	
AVEYFQDNSPDSPELNK	1	Unmodified	1951.88	0.87995103	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	2	3	53.403	52.773	2;3	3.3127E-40	46834	160511_QHF_FH_JSI9i_1	200.44	194.21			0.97162	0.98287	41.181	7	2	Median	1.1641	0.98287	NaN	1	0	Median	1.6026	1.9082	NaN	1	0	Median	0.67442	0.64019	44.788	2	0	Median	0.97162	1.0067	8.9115	3	2	Median	250770000	131770000	119010000	30334000	14744000	15590000	36844000	13893000	22952000	104980000	61318000	43662000	78616000	41814000	36802000	5661	5465	5344	35323;35324;35325;35326;35327;35328;35329	48360;48361;48362;48363;48364;48365	48365			6	
AVEYGLIQPNQDGE	0	Unmodified	1531.7155	0.71545188	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.233	59.588	2	0.00042492	54134	160511_QHF_FH_JSI12i_1	98.04	88.608			1.0086	0.92448	11.069	4	2	Median	1.1595	0.96623	NaN	1	1	Median	0.73947	0.86373	NaN	1	0	Median	0.94262	0.88453	NaN	1	1	Median	1.0791	1.103	NaN	1	0	Median	272870000	128840000	144030000	77723000	36873000	40851000	57132000	32361000	24771000	71437000	33068000	38369000	66577000	26538000	40040000	5662	4704	5345	35330;35331;35332;35333	48366;48367;48368;48369;48370;48371	48369			5	
AVEYLLMGIPGDR	0	Unmodified	1432.7384	0.73843593	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.6	5.2		4						1		1	3	1		84.595	81.541	2;3	3.7676E-12	73910	160511_QHF_FH_JSI9i_2	116.55	76.392			0.78546	0.92277	57.42	4	4	Median	NaN	NaN	NaN	0	0	Median	0.76358	0.93901	46.806	3	3	Plateau	1.703	1.6597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	148670000	82035000	66635000	0	0	0	140890000	79001000	61884000	7784900	3034300	4750700	0	0	0	5663	1831	5346	35334;35335;35336;35337;35338	48372;48373;48374;48375;48376	48372			5	
AVEYNALFK	1	Unmodified	1053.5495	0.54949617	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	55.693	54.864	2	0.00016756	49651	160511_QHF_FH_JSI11i_1	105.14	73.2			0.91045	0.93446	15.892	9	7	Median	1.391	1.2173	27.785	3	2	Plateau	0.82245	0.99715	5.28	2	2	Median	0.92803	0.92582	1.3146	2	2	Median	0.8454	0.92769	19.33	2	1	Median	920400000	437750000	482650000	236680000	102950000	133730000	193230000	92218000	101010000	302210000	153390000	148820000	188280000	89181000	99094000	5664	369	5347	35339;35340;35341;35342;35343;35344;35345;35346;35347	48377;48378;48379;48380;48381;48382;48383;48384;48385	48377			9	
AVEYNALFKK	2	Acetyl (K)	1223.655	0.65502388	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		70.572	59.611	2	0.011769	32697	160513_QHF_FH_JSI11Kac_4	69.954	31.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1781700	1781700	0	0	0	0	0	0	0	1781700	1781700	0	0	0	0	5665	369	5348	35348	48386	48386	187		1	
AVEYYFASDASAVIEHTNR	0	Unmodified	2142.0018	0.0017974991	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.75	5.93		2	1						1	2	1		1	75.092	72.477	3	1.2823E-25	37043	160513_QHF_FH_JSI9Kac_6	154.26	144.31			1.479	1.257	52.202	4	1	Median	1.479	1.257	13.342	2	0	Median	0.78747	0.96074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.0171	3.1273	NaN	1	1	Median	184350000	75238000	109120000	108100000	44189000	63910000	51356000	23142000	28214000	0	0	0	24899000	7907100	16992000	5666	2242	5349	35349;35350;35351;35352	48387;48388;48389;48390;48391;48392	48391			6	
AVFADLDLR	0	Acetyl (Protein N-term)	1060.5553	0.55530983	2086	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	99.612	99.487	2	0.0026182	89925	160511_QHF_FH_JSI10i_1	60.436	38.665			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5667	2086	5350	35353;35354;35355;35356	48393;48394;48395;48396;48397;48398;48399	48397			7	
AVFDETYPDPVR	0	Unmodified	1407.667	0.66704513	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.94	4.71	6	5	4				2	1		4	4	5	5	59.437	56.488	2	9.0232E-57	51534	160511_QHF_FH_JSI12i_1	261.65	239.56			0.90122	0.97651	9.7623	14	8	Median	1.2155	0.98887	14.221	3	1	Plateau	0.79364	0.93771	8.4155	3	2	Median	0.92797	0.92234	6.7196	4	2	Median	0.90122	0.98012	1.5379	4	3	Median	5995500000	3058000000	2937500000	822900000	384730000	438170000	984290000	550910000	433390000	2507300000	1297100000	1210200000	1681000000	825240000	855780000	5668	1664	5351	35357;35358;35359;35360;35361;35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372;35373;35374	48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421	48407			22	
AVFDGNYYYYLPWAHTK	1	Unmodified	2106.984	0.98396259	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.85		1	1						6	1	2	1	4	87.943	81.837	2;3	1.9512E-111	41361	160513_QHF_FH_JSI12Kac_6	249.62	230.29			0.98212	0.98933	13.527	8	1	Median	1.0517	0.90248	NaN	1	0	Median	1.0273	1.2031	14.468	2	1	Median	1.0564	1.0041	NaN	1	0	Median	0.90381	0.96157	10.612	4	0	Median	3292200000	1689800000	1602400000	585280000	287520000	297760000	841860000	469750000	372110000	768780000	390210000	378570000	1096300000	542350000	553980000	5669	5161	5352	35375;35376;35377;35378;35379;35380;35381;35382	48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432;48433;48434	48431			13	
AVFDGNYYYYLPWAHTKPVVTLTSYWEDISHR	1	Unmodified	3890.8733	0.87329651	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	95.423	87.564	4;5	1.0123E-21	51398	160513_QHF_FH_JSI10Kac_6	117.24	108.48			0.93896	1.1069	19.209	5	0	Median	0.89877	0.77444	NaN	1	0	Median	0.79964	0.94763	21.971	2	0	Median	1.1931	1.1258	NaN	1	0	Median	1.0751	1.1384	NaN	1	0	Median	1009000000	504640000	504320000	233890000	99581000	134310000	487900000	249510000	238380000	157130000	83869000	73264000	130050000	71680000	58367000	5670	5161	5353	35383;35384;35385;35386;35387	48435;48436;48437	48437			3	
AVFDNLIQLEHLNIVK	1	Unmodified	1865.0411	0.041083539	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	1	3	100.25	100.16	2;3	1.7255E-30	86618	160511_QHF_FH_JSI12i_3	194.7	169.22			1.0053	1.0229	19.577	7	0	Median	1.2262	1.057	NaN	1	0	Median	0.97432	1.1504	31.014	2	0	Median	0.80981	0.85786	NaN	1	0	Median	1.0053	1.0229	19.318	3	0	Median	589570000	312330000	277250000	23767000	9926700	13840000	67432000	35142000	32291000	38117000	22817000	15300000	460260000	244440000	215820000	5671	5316	5354	35388;35389;35390;35391;35392;35393;35394	48438;48439;48440;48441;48442;48443;48444;48445;48446;48447;48448;48449	48449			12	
AVFDQIIELQNAQDAIYR	0	Unmodified	2106.0746	0.074568512	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	97.747	97.444	3	0.00091921	83748	160511_QHF_FH_JSI12i_2	54.288	40.034			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5672	4018	5355	35395	48450	48450			1	
AVFDVDK	1	Unmodified	792.40177	0.4017693	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.67	30.071	2	0.012047	26950	160511_QHF_FH_JSI12i_1	69.998	43.89			0.99948	0.89036	13.218	4	0	Median	1.0885	0.88136	NaN	1	0	Median	0.74674	0.88395	NaN	1	0	Median	0.91972	0.89682	NaN	1	0	Median	1.0862	1.1554	NaN	1	0	Median	2635400000	1335100000	1300300000	407730000	202630000	205110000	765270000	421040000	344220000	766780000	393240000	373550000	695600000	318190000	377410000	5673	1865	5356	35396;35397;35398;35399	48451;48452;48453;48454;48455;48456;48457;48458;48459	48453			9	
AVFDVDKK	2	Acetyl (K)	962.5073	0.50729701	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	49.041	38.689	2	0.041914	22309	160513_QHF_FH_JSI12Kac_4	61.962	42.485			0.98729	1.0422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98729	1.0422	NaN	1	1	Median	3026900	1606100	1420800	0	0	0	0	0	0	0	0	0	3026900	1606100	1420800	5674	1865	5357	35400	48460	48460	1875;1876		1	
AVFDVDKKK	3	Acetyl (K)	1090.6023	0.60226003	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4			1	2	2	39.83	29.936	2;3	0.0025987	17234	160513_QHF_FH_JSI11Kac_5	99.802	57.515			0.73728	0.80992	51.708	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9683	1.1577	NaN	1	0	Median	0.36226	0.36024	NaN	1	0	Median	0.73728	0.80992	26.341	2	0	Median	41505000	23881000	17624000	0	0	0	8237700	3895700	4342000	20959000	13603000	7356200	12308000	6382400	5926000	5675	1865	5358	35401;35402;35403;35404;35405	48461;48462;48463;48464;48465;48466	48464	1875;1876		6	
AVFGHPFSLGWASPFATPDQGK	1	Unmodified	2316.1328	0.13275209	5125	Q9NYG2	ZDHHC3	Palmitoyltransferase ZDHHC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		98.365	98.195	3	5.8198E-08	86736	160511_QHF_FH_JSI11i_3	85.61	79.488			1.3498	1.2765	21.468	3	0	Plateau	1.1458	0.95347	NaN	1	0	Median	0.73902	0.83986	NaN	1	0	Median	1.3498	1.2765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64134000	29011000	35123000	16305000	6836200	9468600	11841000	6310100	5530700	35988000	15865000	20123000	0	0	0	5676	5125	5359	35406;35407;35408	48467;48468;48469;48470;48471;48472;48473;48474;48475	48468			9	
AVFHEEEQR	0	Unmodified	1143.5309	0.530886	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	10.068	10.115	2;3	0.00029814	7387	160511_QHF_FH_JSI12i_3	60.102	55.929			0.99419	0.96927	15.998	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90038	0.84806	12.289	2	0	Median	1.0614	1.0734	7.8343	2	0	Median	311620000	150980000	160640000	0	0	0	0	0	0	158380000	80651000	77731000	153240000	70333000	82909000	5677	179	5360	35409;35410;35411;35412;35413	48476;48477;48478;48479;48480;48481;48482;48483;48484;48485	48484			10	
AVFLVPK	1	Unmodified	772.48471	0.48471107	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.149	48.751	2	0.014827	41758	160511_QHF_FH_JSI12i_2	65.263	28.706			0.66296	0.73062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66296	0.73062	NaN	1	1	Median	59548000	40196000	19352000	0	0	0	0	0	0	0	0	0	59548000	40196000	19352000	5678	4678	5361	35414	48486	48486			1	
AVFPLLYVR	0	Unmodified	1076.6383	0.6382516	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	1	2	3	1	87.614	85.783	2	4.7326E-09	77740	160511_QHF_FH_JSI11i_3	154.35	144.32			1.1087	1.0615	8.0451	7	1	Median	1.3689	1.0878	NaN	1	0	Median	0.79962	0.95153	2.4094	2	0	Median	1.1087	1.0339	6.9261	3	1	Plateau	1.1165	1.118	NaN	1	0	Median	350110000	163040000	187070000	51184000	23325000	27859000	59299000	29930000	29368000	150480000	72236000	78248000	89143000	37550000	51593000	5679	3560	5362	35415;35416;35417;35418;35419;35420;35421	48487;48488;48489;48490;48491;48492;48493;48494;48495;48496;48497;48498	48488			12	
AVFPSIVGR	0	Unmodified	944.54435	0.54435122	2062;1916;2070;2015	P60709;Q6S8J3;A5A3E0;P0CG38;P63267;P62736;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.16	2	4	4					1	3	4	4	3	3	59.878	56.63	2	7.2986E-12	47381	160511_QHF_FH_JSI10i_3	166.78	131.68			0.83985	0.91346	17.17	14	0	Median	1.2351	1.0206	9.7288	4	0	Median	0.81294	0.88896	7.2719	4	0	Linear	0.82726	0.77822	2.2421	3	0	Median	0.68172	0.69038	5.7083	3	0	Median	6200200000	3146800000	3053400000	2064900000	854530000	1210400000	1609400000	885160000	724280000	1676000000	907430000	768540000	849850000	499640000	350210000	5680	1916;2015;2062;2070	5363	35422;35423;35424;35425;35426;35427;35428;35429;35430;35431;35432;35433;35434;35435	48499;48500;48501;48502;48503;48504;48505;48506;48507;48508;48509;48510;48511;48512;48513;48514;48515;48516;48517;48518;48519;48520;48521;48522	48505			24	
AVFPSIVGRPR	0	Unmodified	1197.6982	0.6982261	2062;1916;2070;2015	P60709;Q6S8J3;A5A3E0;P0CG38;P63267;P62736;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.98	2	3	1					1	4	3	5	2	1	53.242	47.715	2;3	6E-12	26087	160513_QHF_FH_JSI10Kac_6	117.02	93.878			1.0292	1.1806	27.883	9	4	Median	1.4277	1.2123	40.307	3	1	Median	0.90047	1.0586	8.4065	3	1	Median	1.2153	1.1939	21.431	2	1	Median	0.88729	0.94201	NaN	1	1	Median	597290000	293020000	304270000	157120000	69810000	87312000	344610000	174090000	170520000	65117000	32654000	32463000	30442000	16468000	13974000	5681	1916;2015;2062;2070	5364	35436;35437;35438;35439;35440;35441;35442;35443;35444;35445;35446	48523;48524;48525;48526;48527;48528;48529;48530;48531;48532;48533;48534;48535	48535			13	
AVFQANQENLPILK	1	Unmodified	1583.8671	0.86714192	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.14	9	5	7				1	4		6	6	7	7	73.927	71.264	2;3	1.5807E-135	62452	160511_QHF_FH_JSI12i_2	289.44	255.48			1.0317	1.0442	13.624	24	6	Median	1.2266	1.0451	10.727	5	0	Median	0.80323	1.0809	16.721	6	2	Linear	1.0278	0.99512	4.6641	7	2	Median	0.98798	1.0492	17.503	6	2	Median	3051300000	1573400000	1477900000	402980000	180450000	222530000	595340000	298110000	297230000	1252800000	673190000	579590000	800230000	421680000	378560000	5682	821	5365	35447;35448;35449;35450;35451;35452;35453;35454;35455;35456;35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467;35468;35469;35470;35471;35472	48536;48537;48538;48539;48540;48541;48542;48543;48544;48545;48546;48547;48548;48549;48550;48551;48552;48553;48554;48555;48556;48557;48558;48559;48560;48561;48562;48563;48564;48565;48566;48567;48568;48569;48570;48571;48572;48573;48574;48575;48576;48577;48578;48579;48580;48581;48582;48583;48584	48547			48	
AVFQFYQR	0	Unmodified	1057.5345	0.53451481	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	60.792	51.654	2	0.00075879	28456	160513_QHF_FH_JSI10Kac_6	117.62	68.865			1.0808	0.8357	17.942	3	3	Plateau	1.1382	0.97555	NaN	1	1	Median	0.69949	0.8357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0808	1.1951	NaN	1	1	Median	112100000	57551000	54553000	24533000	10675000	13858000	73601000	39895000	33707000	0	0	0	13970000	6981500	6988400	5683	4473	5366	35473;35474;35475;35476	48585;48586;48587;48588	48588			4	
AVFTDLGSKDLK	2	Unmodified	1292.6976	0.69761697	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		63.713	63.713	3	0.053946	56446	160511_QHF_FH_JSI11i_3	30.872	15.728			2648.1	2589.5	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2648.1	2589.5	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9401900000	3727300	9398100000	0	0	0	0	0	0	9401900000	3727300	9398100000	0	0	0	5684	2511	5367	35477	48589	48589			1	
AVFVDLEPTVIDEIR	0	Unmodified	1714.9142	0.91415169	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							3	3	3	3	100.77	100.65	2;3	1.5063E-80	86525	160511_QHF_FH_JSI12i_2	240.21	174.71			0.93989	1.0334	21.094	12	2	Median	1.5137	1.263	19.513	3	0	Median	0.83314	0.92655	14.1	3	0	Median	1.0041	1.0264	15.303	3	1	Median	0.92114	1.0192	22.71	3	1	Median	1530200000	780480000	749730000	239120000	112600000	126520000	156940000	75891000	81044000	627560000	320710000	306850000	506600000	271280000	235320000	5685	2074	5368	35478;35479;35480;35481;35482;35483;35484;35485;35486;35487;35488;35489	48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601;48602;48603;48604;48605;48606	48593			17	
AVFVDLEPTVIDEIRNGPYR	0	Unmodified	2302.1957	0.19574628	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			100.86	100.69	3	3.3302E-11	83336	160511_QHF_FH_JSI10i_3	126.19	98.011			2.5313	3.0148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5313	3.0148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55194000	13865000	41329000	0	0	0	55194000	13865000	41329000	0	0	0	0	0	0	5686	2074	5369	35490	48607	48607			1	
AVFVDLEPTVIDEVR	0	Unmodified	1700.8985	0.89850163	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.19	2.25	13	16	7					1		8	9	10	10	94.694	94.01	2;3	1.4805E-137	78486	160511_QHF_FH_JSI10i_3	291.66	241.31			0.99054	1.0393	18.477	32	14	Median	1.2747	1.0393	5.6715	8	3	Median	0.88559	1.0548	19.363	9	5	Median	1.0158	1.012	30.818	8	4	Median	0.98276	1.0277	4.4501	7	2	Median	26924000000	13490000000	13434000000	5798600000	2555600000	3243000000	8125900000	4367900000	3758000000	6295200000	2989800000	3305400000	6704200000	3577200000	3127100000	5687	2073;4359	5370	35491;35492;35493;35494;35495;35496;35497;35498;35499;35500;35501;35502;35503;35504;35505;35506;35507;35508;35509;35510;35511;35512;35513;35514;35515;35516;35517;35518;35519;35520;35521;35522;35523;35524;35525;35526;35527	48608;48609;48610;48611;48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626;48627;48628;48629;48630;48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641;48642;48643;48644;48645;48646;48647;48648;48649;48650;48651;48652;48653;48654;48655;48656;48657;48658;48659;48660;48661;48662;48663;48664;48665;48666;48667;48668;48669;48670;48671;48672;48673;48674;48675;48676;48677;48678;48679;48680;48681;48682;48683;48684;48685;48686;48687;48688;48689	48626			82	
AVFVDLEPTVIDEVRTGTYR	0	Unmodified	2279.1798	0.17976186	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			93.439	92.82	3	8.5094E-05	81515	160511_QHF_FH_JSI9i_2	68.567	54.735			0.84741	0.84534	179.35	2	2	Median	0.27251	0.23783	NaN	1	1	Median	2.6351	3.0046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33289000	19280000	14009000	19036000	14811000	4224500	14253000	4468600	9784700	0	0	0	0	0	0	5688	2073;4359	5371	35528;35529	48690;48691	48691			2	
AVFVLSCLLK	1	Unmodified	1148.6628	0.66275179	3752	Q8WU76	SCFD2	Sec1 family domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			97.984	97.723	2	0.0037375	80898	160511_QHF_FH_JSI10i_3	58.676	44.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5689	3752	5372	35530	48692	48692			1	
AVFWDIK	1	Unmodified	877.46979	0.46978929	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	65.652	64.792	2	0.005866	56503	160511_QHF_FH_JSI11i_2	93.262	62.544			0.99099	1.0589	10.319	8	1	Median	1.3409	1.1496	11.874	2	1	Median	0.91326	1.0879	5.8592	2	0	Median	0.99575	0.9619	15.164	2	0	Median	0.99099	1.0469	1.8592	2	0	Median	483570000	250230000	233340000	66917000	31815000	35102000	112510000	61743000	50771000	174320000	95884000	78433000	129820000	60791000	69032000	5690	3101	5373	35531;35532;35533;35534;35535;35536;35537;35538	48693;48694;48695;48696;48697;48698;48699;48700;48701	48699			9	
AVFYAEFQNIR	0	Unmodified	1356.6826	0.68263561	3598	Q8NBN3	TMEM87A	Transmembrane protein 87A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	75.699	67.233	2	3.3847E-15	36409	160513_QHF_FH_JSI11Kac_6	158.87	119.73			1.1187	1.0043	11.452	4	1	Linear	1.6212	1.3933	NaN	1	1	Median	0.92987	1.0766	NaN	1	0	Median	1.194	1.1309	NaN	1	0	Median	1.0481	1.1347	NaN	1	0	Median	135440000	60874000	74561000	23855000	7885300	15970000	60849000	30176000	30673000	29209000	13343000	15867000	21522000	9470400	12052000	5691	3598	5374	35539;35540;35541;35542	48702;48703;48704;48705	48703			4	
AVFYNSVNGIIFVHDLTNK	1	Unmodified	2150.116	0.1160394	2889	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.7	6.13			2						4	2		2	2	90.297	84.298	3	1.9767E-71	43651	160513_QHF_FH_JSI11Kac_6	213.51	194.97			0.89217	0.89497	51.654	6	4	Median	1.3599	1.1377	12.447	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5306	0.49763	73.869	2	1	Median	0.73951	0.77395	29.683	2	1	Median	637560000	293800000	343770000	269590000	105970000	163630000	0	0	0	206540000	105270000	101270000	161420000	82554000	78871000	5692	2889	5375	35543;35544;35545;35546;35547;35548	48706;48707;48708;48709;48710;48711;48712;48713	48709			8	
AVFYNSVNGIIFVHDLTNKK	2	Unmodified	2278.211	0.21100241	2889	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	83.014	74.77	4	5.5332E-08	40453	160513_QHF_FH_JSI9Kac_6	91.637	74.06			0.95398	0.94743	29.32	4	0	Median	1.0291	0.88884	NaN	1	0	Median	0.88436	1.0382	NaN	1	0	Median	1.0506	1.0099	NaN	1	0	Median	0.51476	0.55206	NaN	1	0	Median	680580000	333910000	346670000	238420000	102120000	136300000	241420000	105790000	135630000	106690000	54423000	52269000	94050000	71580000	22470000	5693	2889	5376	35549;35550;35551;35552	48714;48715;48716	48714			3	
AVGAQASVGSR	0	Unmodified	1001.5254	0.52540669	5076	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		8	6		1					1			1		1		12.862	8.7705	2	3.4892E-05	8029	160511_QHF_FH_JSI9i_2	98.009	49.448			1.2302	1.1165	47.196	2	1	Median	0.95433	0.79966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5859	1.5588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83687000	40701000	42986000	74546000	38180000	36366000	0	0	0	9141400	2521400	6620000	0	0	0	5694	5076	5377	35553;35554	48717;48718	48718			2	
AVGASFPLYEPAK	1	Unmodified	1348.7027	0.70270235	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.33	0.471	2	1								1		2		63.433	62.758	2	4.421E-05	56992	160511_QHF_FH_JSI11i_1	116.77	76.414			4.2088	4.2589	82.231	3	3	Median	2.538	2.0858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.8227	6.7674	65.493	2	2	Median	NaN	NaN	NaN	0	0	Median	508640000	49925000	458710000	35944000	10110000	25835000	0	0	0	472690000	39815000	432880000	0	0	0	5695	1576	5378	35555;35556;35557	48719;48720;48721	48719			3	
AVGAYSK	1	Unmodified	694.36499	0.36498987	59	CON__P15636			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.27	8	4	4			3	3	3	2	6	7	7	7	9.0676	5.1759	2	5.9318E-05	5219	160513_QHF_FH_JSI9Kac_3	124.89	42.625		+	0.93899	0.9874	54.802	27	8	Median	0.8125	0.80155	60.52	6	2	Median	0.90739	0.9874	65.138	7	2	Median	1.0378	1.0391	43.725	7	2	Median	0.93899	0.97767	51.825	7	2	Median	259260000000	116060000000	143200000000	55789000000	27188000000	28601000000	68500000000	29050000000	39450000000	72733000000	28673000000	44060000000	62242000000	31152000000	31090000000	5696	59	5379	35558;35559;35560;35561;35562;35563;35564;35565;35566;35567;35568;35569;35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581;35582;35583;35584	48722;48723;48724;48725;48726;48727;48728;48729;48730;48731;48732;48733;48734;48735;48736;48737;48738;48739;48740;48741;48742;48743;48744;48745;48746;48747;48748;48749;48750;48751;48752;48753;48754;48755;48756;48757;48758;48759;48760	48737			39	
AVGDGILCNTYIDSYK	1	Unmodified	1787.84	0.84000047	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	2	3	2	74.021	73.377	2;3	5.9637E-17	64726	160511_QHF_FH_JSI9i_2	125.28	94.456			1.2518	1.2309	26.812	9	5	Median	1.3167	1.1434	14.082	2	2	Median	0.9515	1.1303	8.2069	2	1	Median	1.035	1.0157	41.709	3	1	Plateau	1.5987	1.6627	8.7789	2	1	Median	432780000	199840000	232940000	44173000	22915000	21259000	117170000	59220000	57949000	161440000	77128000	84316000	109990000	40574000	69419000	5697	2846	5380	35585;35586;35587;35588;35589;35590;35591;35592;35593;35594	48761;48762;48763;48764;48765;48766;48767;48768;48769;48770;48771;48772;48773	48769			13	
AVGDGIVLCK	1	Unmodified	1030.5481	0.54811597	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.68	4	3					1		1	2	3	2	2	45.265	42.439	2	2.0682E-08	38262	160511_QHF_FH_JSI11i_1	126.41	102.26			0.80342	0.80379	38.136	9	5	Median	0.63093	0.53449	4.1919	2	1	Median	0.81454	0.96752	22.903	3	2	Median	0.82374	0.80754	2.3724	2	0	Median	1.0952	1.1779	57.801	2	2	Median	1292200000	708990000	583170000	142050000	81436000	60613000	372700000	215590000	157120000	421140000	224450000	196680000	356270000	187510000	168760000	5698	1039	5381	35595;35596;35597;35598;35599;35600;35601;35602;35603	48774;48775;48776;48777;48778;48779;48780;48781;48782	48775			9	
AVGDTPIMK	1	Unmodified	930.48445	0.48445308	609	O94817	ATG12	Ubiquitin-like protein ATG12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.188	28.625	2	0.0088025	25267	160511_QHF_FH_JSI11i_1	52.482	27.559			1.0063	1.0254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0063	1.0254	NaN	1	1	Median	81903000	35779000	46124000	0	0	0	0	0	0	0	0	0	81903000	35779000	46124000	5699	609	5382	35604;35605;35606	48783;48784;48785	48783			3	
AVGESVQK	1	Unmodified	816.43413	0.43413207	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.1741	7.8247	2	0.0051924	5349	160511_QHF_FH_JSI9i_1	74.255	37.096			0.49717	0.78051	33.59	4	4	Linear	0.858	0.71597	NaN	1	1	Median	0.7167	0.85087	NaN	1	1	Median	0.50716	0.489	NaN	1	1	Median	1.0202	1.0868	NaN	1	1	Median	1662400000	1115800000	546580000	352780000	217590000	135190000	460490000	323680000	136820000	508160000	368340000	139820000	340940000	206190000	134750000	5700	2533	5383	35607;35608;35609;35610	48786;48787;48788;48789	48789			4	
AVGFSSGTENPHGVK	1	Unmodified	1485.7212	0.72120596	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.9		6	5					1	3	4	3	4	4	25.549	22.554	2;3	2.1646E-160	18522	160511_QHF_FH_JSI12i_3	259.27	252.69			1.1317	1.0941	21.686	13	0	Median	1.0628	0.8875	14.757	3	0	Median	0.82109	0.96388	7.9963	2	0	Median	1.1696	1.1472	8.0844	4	0	Median	1.4103	1.4783	30.966	4	0	Median	1582200000	708360000	873810000	119730000	47266000	72460000	176780000	89123000	87662000	528340000	239760000	288570000	757320000	332210000	425110000	5701	2806	5384	35611;35612;35613;35614;35615;35616;35617;35618;35619;35620;35621;35622;35623;35624;35625	48790;48791;48792;48793;48794;48795;48796;48797;48798;48799;48800;48801;48802;48803;48804;48805;48806;48807;48808;48809;48810;48811;48812;48813	48809			24	
AVGHLIPFMEK	1	Unmodified	1240.6638	0.66381443	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	63.419	62.597	2;3	4.2916E-05	53936	160511_QHF_FH_JSI12i_3	67.08	59.434			1.0478	0.954	38.52	8	1	Median	1.167	0.954	1.8542	2	0	Median	0.69332	0.81417	11.665	2	0	Median	1.2006	1.1353	34.415	2	1	Median	1.5213	1.564	66.086	2	0	Median	574710000	285680000	289020000	169580000	81716000	87864000	115980000	66843000	49138000	127950000	59066000	68885000	161190000	78059000	83134000	5702	4303	5385	35626;35627;35628;35629;35630;35631;35632;35633	48814;48815;48816;48817;48818;48819;48820;48821;48822;48823;48824;48825;48826;48827	48825			14	
AVGHPFVIQLGR	0	Unmodified	1292.7353	0.73533988	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.8	5.63			2						6	3	2	2	1	63.236	55.948	2;3	1.5904E-06	29644	160513_QHF_FH_JSI9Kac_6	79.201	57.84			1.0616	1.011	29.795	8	1	Median	1.2006	1.0091	31.254	3	0	Median	0.65282	0.76541	32.351	2	1	Median	1.3008	1.2619	13.13	2	0	Median	0.95387	1.0475	NaN	1	0	Median	822530000	453970000	368550000	306690000	135230000	171460000	385430000	267010000	118410000	122260000	47485000	74777000	8149800	4245800	3904000	5703	231	5386	35634;35635;35636;35637;35638;35639;35640;35641	48828;48829;48830;48831;48832	48831			4	
AVGIVGIER	0	Unmodified	912.53927	0.53926584	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.108	41.634	2	0.015773	35786	160511_QHF_FH_JSI11i_2	54.157	24.781			0.99204	0.97574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99204	0.97574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48521000	23869000	24651000	0	0	0	0	0	0	48521000	23869000	24651000	0	0	0	5704	3342	5387	35642	48833	48833			1	
AVGIWHCGSCMK	1	Unmodified	1404.6101	0.61008107	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			10						5	3	4	4	4	38.371	34.79	2;3	1.4846E-05	29197	160511_QHF_FH_JSI10i_3	96.604	92.264			1.0533	1.0884	25.575	12	2	Median	0.93118	0.75125	10.034	3	1	Plateau	0.85228	0.99801	14.75	3	0	Plateau	1.2527	1.1854	10.512	3	0	Median	1.0378	1.0664	5.8032	3	1	Median	1328500000	631200000	697300000	269680000	141000000	128670000	351190000	176110000	175080000	355340000	153980000	201350000	352300000	160100000	192200000	5705	1956	5388	35643;35644;35645;35646;35647;35648;35649;35650;35651;35652;35653;35654;35655;35656;35657	48834;48835;48836;48837;48838;48839;48840;48841;48842;48843;48844;48845;48846;48847;48848;48849;48850;48851	48840			18	
AVGIWHCGSCMK	1	Oxidation (M)	1420.605	0.60499569	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				27.119	25.765	2	0.011621	20917	160511_QHF_FH_JSI9i_3	55.549	37.238			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5706	1956	5388	35658	48852	48852		1626	1	
AVGKVIPELNGK	2	Acetyl (K)	1265.7343	0.73433683	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.98					2	3	6	4		1	5	3	6	68.748	58.395	2	2.1953E-15	32101	160513_QHF_FH_JSI11Kac_4	137.98	104.1			0.80555	0.86719	152.98	14	1	Median	1.1216	0.94997	NaN	1	0	Median	0.79941	0.95788	68.781	5	0	Median	0.54078	0.54161	37.798	3	0	Median	1.4846	1.6472	229.28	5	1	Median	394630000	205880000	188750000	7050500	3582300	3468200	119610000	65330000	54277000	97054000	60481000	36572000	170920000	76483000	94432000	5707	812	5389	35659;35660;35661;35662;35663;35664;35665;35666;35667;35668;35669;35670;35671;35672;35673	48853;48854;48855;48856;48857;48858;48859;48860;48861;48862;48863;48864;48865;48866	48859	446;447		13	
AVGKVIPELNGK	2	Unmodified	1223.7238	0.72377215	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.709	38.529	3	0.010459	32848	160511_QHF_FH_JSI12i_3	41.87	32.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5708	812	5389	35674	48867	48867			1	
AVGLLTVISK	1	Unmodified	999.63283	0.63283187	349	O43653	PSCA	Prostate stem cell antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	71.525	70.717	2	6.0012E-05	59412	160511_QHF_FH_JSI10i_3	91.087	72.357			0.95617	0.92121	34.784	4	0	Median	0.77006	0.61767	NaN	1	0	Median	0.62129	0.71842	NaN	1	0	Median	1.2755	1.1812	NaN	1	0	Median	1.1873	1.2281	NaN	1	0	Median	272350000	128070000	144290000	48254000	22710000	25544000	41966000	25873000	16093000	68673000	29226000	39447000	113460000	50259000	63202000	5709	349	5390	35675;35676;35677;35678	48868;48869;48870;48871;48872;48873;48874	48870			7	
AVGMASDIPGLHLPGGGR	0	Unmodified	1703.8777	0.87772338	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			71.352	70.208	3	0.0032792	57806	160511_QHF_FH_JSI9i_3	45.458	40.567			1.2965	1.2938	5.4261	4	0	Median	1.5606	1.2871	7.9258	2	0	Median	1.0921	1.2938	5.0245	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123390000	57232000	66163000	52818000	22289000	30528000	70577000	34942000	35635000	0	0	0	0	0	0	5710	3838	5391	35679;35680;35681;35682	48875;48876;48877	48876			0	
AVGMHSFLVVGPQALDPVVR	0	Unmodified	2091.1299	0.12991532	4397	Q9BSH5	HDHD3	Haloacid dehalogenase-like hydrolase domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.33	6.13			2						1		1	2		90.163	86.731	3	2.1217E-05	76855	160511_QHF_FH_JSI10i_3	65.022	62.125			0.76079	0.73029	11.23	3	1	Median	NaN	NaN	NaN	0	0	Median	0.55724	0.63492	NaN	1	0	Median	0.78372	0.76092	5.8104	2	1	Median	NaN	NaN	NaN	0	0	Median	121250000	74053000	47195000	0	0	0	23539000	15121000	8418200	97710000	58933000	38777000	0	0	0	5711	4397	5392	35683;35684;35685	48878;48879;48880;48881	48880			4	
AVGNIVTGTDEQTQVVLNCDALSHFPALLTHPK	1	Unmodified	3544.7984	0.79841701	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.71	100.72	4	3.7351E-55	87324	160511_QHF_FH_JSI12i_3	163.92	158.55			1.0776	1.0777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0776	1.0777	NaN	1	1	Median	158920000	52246000	106680000	0	0	0	0	0	0	0	0	0	158920000	52246000	106680000	5712	158	5393	35686	48882	48882			1	
AVGPASILK	1	Unmodified	854.52255	0.52255314	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							1	2	4	1	42.975	42.569	2	1.9323E-05	36221	160511_QHF_FH_JSI12i_3	107.29	62.213			1.0873	1.0667	2.3178	5	2	Median	NaN	NaN	NaN	0	0	Median	0.88405	1.0942	NaN	1	1	Median	1.0873	1.0556	0.72403	3	1	Median	1.0968	1.1091	NaN	1	0	Median	1799300000	887510000	911830000	0	0	0	329110000	172380000	156730000	822270000	391710000	430560000	647970000	323430000	324540000	5713	657	5394	35687;35688;35689;35690;35691;35692;35693;35694	48883;48884;48885;48886;48887;48888;48889;48890;48891;48892	48891			10	
AVGPEITK	1	Unmodified	813.45962	0.45961853	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	21.52	19.836	2	0.011461	16651	160511_QHF_FH_JSI9i_1	54.157	22.868			0.92844	0.93286	11.926	7	0	Median	1.2079	1.011	11.381	2	0	Median	0.70248	0.85115	6.7584	2	0	Median	0.86537	0.84701	15.234	2	0	Median	0.92844	0.96312	NaN	1	0	Median	2191200000	1111000000	1080100000	570030000	243890000	326130000	509120000	305100000	204020000	581020000	294330000	286690000	531010000	267720000	263290000	5714	1345	5395	35695;35696;35697;35698;35699;35700;35701	48893;48894;48895;48896;48897;48898;48899;48900;48901	48899			9	
AVGPSGGGGETPR	0	Unmodified	1140.5523	0.55234972	4687	Q9H330	TMEM245	Transmembrane protein 245	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.081	10.611	2	0.00089027	8441	160511_QHF_FH_JSI12i_1	67.113	49.873			0.76208	0.6443	19.687	3	1	Plateau	0.7996	0.66613	NaN	1	0	Median	0.76208	0.90549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61251	0.62733	NaN	1	0	Median	252830000	135260000	117560000	95456000	53494000	41962000	59653000	33514000	26139000	0	0	0	97717000	48254000	49463000	5715	4687	5396	35702;35703;35704;35705	48902;48903;48904;48905	48903			4	
AVGPTAEADK	1	Unmodified	957.47673	0.47672516	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	25.032	24.689	2	0.021473	8690	160511_QHF_FH_JSI12i_1	49.16	31.92			0.48405	0.48136	26.533	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42066	0.39901	NaN	1	1	Median	0.55698	0.58069	NaN	1	1	Median	175810000	110880000	64930000	0	0	0	0	0	0	65676000	38590000	27086000	110130000	72285000	37844000	5716	2353	5397	35706;35707	48906;48907	48907			2	
AVGQSVGGAFSSAK	1	Unmodified	1264.6412	0.64116473	3589	Q8NBF6	AVL9	Late secretory pathway protein AVL9 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	31.132	31.055	2	3.5124E-06	26247	160511_QHF_FH_JSI12i_3	124.12	54.17			0.74956	0.76769	41.945	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74956	0.76769	41.945	2	2	Median	76078000	40507000	35571000	0	0	0	0	0	0	0	0	0	76078000	40507000	35571000	5717	3589	5398	35708;35709;35710	48908;48909;48910	48909			3	
AVGSIAYLFFTNR	0	Unmodified	1457.7667	0.76669959	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	89.591	80.928	2;3	1.9859E-109	46840	160513_QHF_FH_JSI10Kac_6	265.36	223.02			0.83489	0.99393	19.108	7	0	Median	1.4037	1.2125	7.4142	2	0	Median	0.83489	0.99393	NaN	1	0	Median	0.94118	0.91154	22.665	2	0	Median	0.77756	0.82989	7.5962	2	0	Median	902620000	481210000	421410000	316340000	144650000	171680000	409740000	233060000	176690000	86543000	48849000	37694000	90001000	54658000	35343000	5718	787	5399	35711;35712;35713;35714;35715;35716;35717	48911;48912;48913;48914;48915;48916;48917;48918;48919;48920;48921;48922	48922			12	
AVGSISSTAFDIR	0	Unmodified	1322.683	0.68302954	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	5.2			1					3			1	2	1	67.375	60.224	2	5.368E-08	32227	160513_QHF_FH_JSI11Kac_5	111.65	63.828			0.54532	0.52778	72.472	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54532	0.52778	82.162	2	1	Median	1.019	1.1177	NaN	1	1	Median	218470000	172800000	45666000	0	0	0	0	0	0	215370000	171310000	44058000	3100800	1492700	1608100	5719	485	5400	35718;35719;35720;35721	48923;48924;48925;48926	48924			4	
AVGSVTVYYEVAGHLR	0	Unmodified	1719.8944	0.8944193	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				75.514	66.924	3	0.00028933	35792	160513_QHF_FH_JSI9Kac_6	75.574	64.312			1.9625	1.7127	NaN	1	1	Median	1.9625	1.7127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64860000	25711000	39149000	64860000	25711000	39149000	0	0	0	0	0	0	0	0	0	5720	3734	5401	35722	48927	48927			1	
AVGTFAR	0	Unmodified	720.39187	0.39187332	606;4414	O94776;Q9BTC8	MTA2;MTA3	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			16.397	15.364	2	0.0089862	12317	160511_QHF_FH_JSI10i_3	81.1	30.063			1.0672	1.033	7.1332	2	0	Median	1.2265	0.98218	NaN	1	0	Median	0.9286	1.0864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	519230000	254900000	264330000	237840000	102340000	135500000	281390000	152560000	128830000	0	0	0	0	0	0	5721	606;4414	5402	35723;35724	48928	48928			1	
AVGTPGGGGGGAVPGISAMSR	0	Unmodified	1754.8734	0.87336628	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			53.943	53.013	2	2.6327E-12	46443	160511_QHF_FH_JSI9i_2	111.12	93.749			0.54033	0.6373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54033	0.6373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16911000	13069000	3842800	0	0	0	16911000	13069000	3842800	0	0	0	0	0	0	5722	1628	5403	35725;35726	48929;48930	48929			2	
AVGTQTLSGAGLLK	1	Unmodified	1314.7507	0.75071518	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	57.754	56.964	2	1.4345E-15	48899	160511_QHF_FH_JSI12i_2	186.74	122.08			0.90556	0.91327	32.166	7	1	Median	0.75161	0.64199	60.033	2	1	Median	0.75239	0.91327	NaN	1	0	Median	0.94186	0.91816	0.82748	2	0	Median	0.93492	1.0092	16.38	2	0	Median	679650000	341050000	338600000	115700000	57925000	57772000	90384000	43619000	46765000	231180000	114080000	117100000	242380000	125420000	116960000	5723	2448	5404	35727;35728;35729;35730;35731;35732;35733	48931;48932;48933;48934;48935;48936;48937;48938;48939;48940;48941;48942;48943	48934			13	
AVGVPALGFSPMNR	0	Unmodified	1414.7391	0.73910463	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			76.07	74.654	2	0.0014807	62622	160511_QHF_FH_JSI10i_3	62.303	34.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5724	2203	5405	35734	48944	48944			1	
AVGWGATQLVEAADK	1	Unmodified	1514.7729	0.77290718	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	70.304	69.709	2	1.2654E-25	60299	160511_QHF_FH_JSI12i_3	226.04	194.54			0.79612	0.81865	13.342	7	2	Median	1.0833	0.92689	NaN	1	0	Median	0.68692	0.84424	NaN	1	0	Median	0.83484	0.80845	1.7741	2	0	Median	0.68665	0.69319	17.5	3	2	Median	226880000	131960000	94919000	21156000	8536800	12619000	23644000	14185000	9459000	68573000	39787000	28786000	113510000	69454000	44055000	5725	481	5406	35735;35736;35737;35738;35739;35740;35741	48945;48946;48947;48948;48949;48950;48951;48952	48952			8	
AVGWNELEGR	0	Unmodified	1129.5516	0.55162144	1955	P61457	PCBD1	Pterin-4-alpha-carbinolamine dehydratase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	47.643	46.687	2	0.00088987	40184	160511_QHF_FH_JSI11i_2	74.941	42.048			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5726	1955	5407	35742;35743	48953;48954	48954			2	
AVHEDIVAVELLPK	1	Unmodified	1531.861	0.86099391	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	72.129	71.233	3	0.00010004	62384	160511_QHF_FH_JSI11i_2	73.927	68.212			0.98829	0.98315	81.549	3	1	Median	NaN	NaN	NaN	0	0	Median	0.21827	0.26685	NaN	1	1	Median	0.98829	0.98315	NaN	1	0	Median	1.0888	1.1963	NaN	1	0	Median	158530000	101840000	56693000	0	0	0	76555000	63367000	13189000	44952000	19950000	25002000	37024000	18522000	18502000	5727	5523	5408	35744;35745;35746	48955;48956;48957;48958;48959	48957			5	
AVHEFLATLNHK	1	Unmodified	1378.7357	0.73573382	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	41.14	40.547	3;4	0.00075331	33915	160511_QHF_FH_JSI9i_3	66.023	58.478			1.2155	1.2181	41.557	3	1	Plateau	0.7003	0.58331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2326	1.177	NaN	1	0	Median	1.2155	1.2181	NaN	1	0	Median	161910000	91694000	70212000	73322000	50459000	22863000	0	0	0	26441000	12113000	14328000	62142000	29121000	33021000	5728	3653	5409	35747;35748;35749;35750	48960;48961;48962	48961			2	
AVHEQLAALSQAPVNKPK	2	Unmodified	1900.053	0.053045209	2622	Q15059	BRD3	Bromodomain-containing protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	38.5	38.5	3	8.6606E-07	33829	160511_QHF_FH_JSI11i_3	105.9	97.556			1.0186	0.95307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0186	0.95307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46494000	27122000	19372000	0	0	0	0	0	0	46494000	27122000	19372000	0	0	0	5729	2622	5410	35751;35752	48963;48964;48965	48964			3	
AVHEQLAALSQGPISK	1	Unmodified	1647.8944	0.8944193	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.37	46.128	3	0.00049352	39453	160511_QHF_FH_JSI12i_3	64.507	48.369			0.85317	0.88498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85317	0.88498	NaN	1	1	Median	114690000	58855000	55840000	0	0	0	0	0	0	0	0	0	114690000	58855000	55840000	5730	1259	5411	35753	48966	48966			1	
AVHEQLAALSQGPISKPK	2	Unmodified	1873.0421	0.042146171	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.971	42.388	3	0.0020221	34643	160511_QHF_FH_JSI9i_3	49.343	45.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5731	1259	5412	35754	48967	48967			1	
AVHEQLAALSQGPISKPK	2	Acetyl (K)	1915.0527	0.052710858	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	64.908	55.029	3	0.02694	28906	160513_QHF_FH_JSI12Kac_6	44.788	34.449			1.1275	1.249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1275	1.249	NaN	1	0	Median	14265000	5515600	8749400	0	0	0	0	0	0	0	0	0	14265000	5515600	8749400	5732	1259	5412	35755	48968	48968	1152		0	
AVHEQLAALSQPQQNKPK	2	Unmodified	1986.0647	0.064672527	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		27.167	27.167	3	0.0011814	23317	160511_QHF_FH_JSI11i_3	58.09	41.691			0.30022	0.2784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30022	0.2784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26515000	10274000	16241000	0	0	0	0	0	0	26515000	10274000	16241000	0	0	0	5733	457	5413	35756;35757	48969;48970	48969			2	
AVHFGLPYLASLGIQSLVQQR	0	Unmodified	2296.2692	0.26918599	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	95.61	87.216	3	7.9326E-22	49093	160513_QHF_FH_JSI11Kac_6	139.46	123.98			0.87889	0.91731	15.163	4	0	Median	0.8211	0.70183	NaN	1	0	Median	0.76155	0.91095	NaN	1	0	Median	0.95221	0.92371	NaN	1	0	Median	0.94074	0.99213	NaN	1	0	Median	733430000	398150000	335290000	99893000	47309000	52584000	427750000	227840000	199900000	100570000	56234000	44337000	105220000	66762000	38462000	5734	5352	5414	35758;35759;35760;35761	48971;48972	48971			2	
AVHISNPK	1	Unmodified	864.48175	0.48175096	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	5	3	3	3	11.26	8.7064	2;3	0.00078911	6994	160511_QHF_FH_JSI12i_3	73.248	48.354			1.0186	0.96481	19.214	13	1	Median	1.1506	0.96152	29.408	4	0	Median	0.89645	1.0788	10.746	3	1	Median	1.1992	1.1938	12.705	3	0	Median	0.86559	0.90478	4.9305	3	0	Median	3899300000	2152600000	1746700000	335380000	153330000	182060000	636510000	356610000	279900000	1180500000	624800000	555730000	1746900000	1017900000	729020000	5735	4982	5415	35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775	48973;48974;48975;48976;48977;48978;48979;48980;48981;48982;48983;48984;48985;48986;48987;48988;48989;48990;48991	48986			19	
AVHNTAVLFLQNDPGFAK	1	Unmodified	1941.0108	0.010846043	4728	Q9H4Z3	PCIF1	Phosphorylated CTD-interacting factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		75.859	66.901	3	0.0025822	35848	160513_QHF_FH_JSI9Kac_6	60.253	53.525			0.42065	0.3918	109.51	2	1	Median	0.20619	0.18062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85813	0.84991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114370000	79018000	35356000	80402000	62633000	17769000	0	0	0	33972000	16385000	17587000	0	0	0	5736	4728	5416	35776;35777	48992;48993	48993			1	
AVHSNPGDPALWSLLSR	0	Unmodified	1818.9377	0.9376811	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	79.29	78.566	3	1.537E-05	65031	160511_QHF_FH_JSI9i_3	83.404	67.89			0.94854	0.93603	27.434	6	2	Median	1.3184	1.0754	20.724	2	1	Median	0.82726	0.94334	NaN	1	0	Median	0.7932	0.73544	42.688	2	1	Median	0.83253	0.83964	NaN	1	0	Median	360050000	179770000	180280000	86091000	34189000	51902000	48033000	25732000	22300000	169820000	87719000	82100000	56107000	32128000	23979000	5737	3117	5417	35778;35779;35780;35781;35782;35783	48994;48995;48996;48997;48998;48999;49000;49001	48998			7	
AVHVESVQPLSLENLALR	0	Unmodified	1974.0898	0.089824645	4875	Q9HD47	RANGRF	Ran guanine nucleotide release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	83.212	82.469	3	2.6545E-05	73186	160511_QHF_FH_JSI10i_2	90.754	80.966			0.7016	0.79765	76.108	4	0	Median	1.228	1.0706	NaN	1	0	Median	0.88271	1.0791	NaN	1	0	Median	0.21447	0.21411	NaN	1	0	Median	0.55765	0.59427	NaN	1	0	Median	129640000	71717000	57923000	27266000	8929000	18337000	38290000	20467000	17824000	40885000	29076000	11809000	23199000	13246000	9953300	5738	4875	5418	35784;35785;35786;35787	49002;49003;49004;49005	49005			3	
AVIDGMTDR	0	Unmodified	976.46478	0.46478027	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.325	26.057	2	0.023898	22543	160511_QHF_FH_JSI9i_1	49.418	19.845			1.2849	1.0568	NaN	1	1	Median	1.2849	1.0568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43513000	21033000	22480000	43513000	21033000	22480000	0	0	0	0	0	0	0	0	0	5739	3103	5419	35788	49006	49006			1	
AVIDLNNR	0	Unmodified	913.49813	0.49812931	956	P0DN76;Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2				2	3	4	32.78	29.873	2	0.00014984	18085	160513_QHF_FH_JSI11Kac_4	121.29	75.277			1.1303	1.2218	10.912	8	4	Median	NaN	NaN	NaN	0	0	Median	0.96886	1.1458	8.3964	2	1	Median	1.1954	1.2277	17.984	3	1	Median	1.1228	1.256	2.472	3	2	Plateau	2045800000	988380000	1057400000	0	0	0	569940000	333180000	236770000	756250000	328730000	427510000	719620000	326470000	393140000	5740	956	5420	35789;35790;35791;35792;35793;35794;35795;35796;35797	49007;49008;49009;49010;49011;49012;49013;49014;49015	49012			9	
AVIEHNLLSASK	1	Unmodified	1280.7089	0.70885036	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.06		9	7						6	5	5	5	7	39.119	35.927	2;3	1.5194E-22	31345	160511_QHF_FH_JSI11i_3	169.58	155.46			1.1064	1.0923	24.135	17	1	Median	1.2797	1.0976	43.293	4	1	Median	0.88078	1.08	8.7018	5	0	Median	1.4747	1.4323	20.905	5	0	Linear	1.103	1.1037	15.318	3	0	Plateau	2910400000	1477500000	1432900000	202650000	111550000	91098000	557940000	299320000	258630000	891090000	492950000	398140000	1258700000	573720000	685010000	5741	4411	5421	35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812;35813;35814;35815;35816;35817;35818;35819	49016;49017;49018;49019;49020;49021;49022;49023;49024;49025;49026;49027;49028;49029;49030;49031;49032;49033;49034;49035;49036;49037;49038;49039;49040;49041;49042;49043;49044;49045;49046	49019			31	
AVIELLEK	1	Unmodified	913.54843	0.54843354	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	61.084	60.173	2	0.0040696	52164	160511_QHF_FH_JSI11i_2	69.825	15.299			0.92643	1.0081	14.683	4	0	Median	1.1072	1.0011	NaN	1	0	Median	0.85266	1.0324	NaN	1	0	Median	1.0066	1.015	NaN	1	0	Median	0.67442	0.75837	NaN	1	0	Median	217080000	107680000	109400000	47191000	23071000	24120000	50855000	29702000	21153000	69571000	30220000	39351000	49461000	24690000	24771000	5742	3141	5422	35820;35821;35822;35823	49047	49047			1	
AVIETADR	0	Unmodified	873.4556	0.45559579	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	13.577	13.179	2	0.014526	10729	160511_QHF_FH_JSI10i_1	60.682	37.158			0.85457	0.96792	35.309	5	5	Median	1.1852	0.96792	NaN	1	1	Median	0.66845	0.78206	34.818	2	2	Median	0.67823	0.65825	NaN	1	1	Median	1.3932	1.4616	NaN	1	1	Median	691030000	371350000	319680000	184460000	95246000	89213000	221330000	136020000	85310000	124730000	71335000	53396000	160500000	68747000	91758000	5743	2276	5423	35824;35825;35826;35827;35828	49048;49049;49050;49051;49052	49050			5	
AVIFCLSADK	1	Unmodified	1122.5743	0.57433072	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7	6.38		1	1						1		1		2	61.952	61.161	2	0.0016869	52848	160511_QHF_FH_JSI12i_3	76.221	59.748			0.78002	0.83	126.8	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78002	0.83	126.8	2	2	Median	179270000	100600000	78670000	0	0	0	0	0	0	0	0	0	179270000	100600000	78670000	5744	1925	5424	35829;35830;35831	49053;49054;49055	49054			3	
AVIFCLSADKK	2	Unmodified	1250.6693	0.66929373	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		11.7	6.13			1						2		2	1		53.376	49.134	2;3	7.4269E-08	27220	160513_QHF_FH_JSI10Kac_6	92.866	75.393			2.9079	3.1368	130.08	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0405	1.2503	NaN	1	0	Median	8.1269	7.8694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	608050000	116400000	491650000	0	0	0	123830000	65796000	58037000	484220000	50607000	433610000	0	0	0	5745	1925	5425	35832;35833;35834	49056;49057;49058	49057			3	
AVIGSTYMLTQDEVLWEK	1	Unmodified	2082.0343	0.034343181	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				94.81	94.601	3	0.059088	83238	160511_QHF_FH_JSI9i_2	22.646	11.987			2.0835	1.7622	NaN	1	1	Median	2.0835	1.7622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9947700	2432800	7514900	9947700	2432800	7514900	0	0	0	0	0	0	0	0	0	5746	2573	5426	35835	49059	49059			1	
AVIILVPVR	0	Unmodified	978.65899	0.65898704	4032	Q96DT6	ATG4C	Cysteine protease ATG4C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.42		2						4	4	2	3	3	2	78.072	70.4	2	4.428E-05	36572	160513_QHF_FH_JSI12Kac_6	122.79	122.79			1.1017	1.0309	20.329	10	3	Median	1.2535	1.0686	8.4058	2	0	Median	0.85965	1.0295	11.078	3	1	Plateau	1.0568	1.0323	31.808	3	1	Median	1.1802	1.27	4.5822	2	1	Median	367440000	194040000	173400000	79889000	37941000	41949000	156020000	93354000	62670000	100550000	49434000	51113000	30978000	13307000	17671000	5747	4032	5427	35836;35837;35838;35839;35840;35841;35842;35843;35844;35845	49060;49061;49062;49063;49064;49065;49066;49067;49068;49069;49070;49071;49072;49073;49074	49071			15	
AVILELK	1	Unmodified	784.50584	0.50584045	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.97		2						4	1	1	2	2	2	59.55	51.928	2	0.011468	44236	160511_QHF_FH_JSI12i_2	70.912	8.1982			0.89791	1.0131	19.695	7	1	Median	1.4022	1.1727	NaN	1	0	Median	0.92308	1.0959	11.114	2	0	Median	0.97087	0.95459	30.65	2	1	Median	0.78659	0.86932	20.218	2	0	Median	171810000	86261000	85549000	3265400	1351000	1914400	11890000	5183200	6707100	78323000	37935000	40388000	78331000	41792000	36540000	5748	1787	5428	35846;35847;35848;35849;35850;35851;35852	49075;49076;49077;49078;49079;49080;49081;49082	49075			8	
AVILGPPGSGK	1	Unmodified	994.58113	0.58113065	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.2	4.92	1	3					1			1		3	1	40.377	37.663	2	0.001381	31954	160511_QHF_FH_JSI12i_2	64.04	29.232			0.28468	0.27626	73.555	5	0	Median	0.25884	0.22079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.28468	0.27626	78.073	3	0	Median	0.76803	0.87219	NaN	1	0	Median	252760000	160110000	92645000	49349000	29261000	20088000	0	0	0	152280000	102300000	49979000	51134000	28557000	22577000	5749	1287	5429	35853;35854;35855;35856;35857	49083;49084;49085;49086;49087	49084			2	
AVILIGGPQK	1	Unmodified	994.61752	0.61751616	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.41	2	3					3	4		2	4	4	2	53.708	47.399	2	0.00046685	26228	160513_QHF_FH_JSI10Kac_4	79.597	76.025			0.95412	1.0279	28.745	9	1	Median	1.2107	1.008	32.403	2	0	Median	1.1741	1.436	21.525	3	0	Median	1.0193	1.0377	25.425	3	1	Plateau	0.924	1.0147	NaN	1	0	Median	182500000	85530000	96973000	39553000	15521000	24032000	65493000	34343000	31150000	74731000	33991000	40740000	2725300	1674400	1050900	5750	4124	5430	35858;35859;35860;35861;35862;35863;35864;35865;35866;35867;35868;35869	49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099	49091			10	
AVILVHDIKK	2	Unmodified	1134.7125	0.71247918	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	5.6	5.2			4						1	1		1	3	29.925	29.861	3;4	0.00050113	24933	160511_QHF_FH_JSI12i_3	69.01	63.859			0.31472	0.3162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31472	0.3162	NaN	1	1	Median	52497000	38974000	13522000	0	0	0	0	0	0	0	0	0	52497000	38974000	13522000	5751	3516	5431	35870;35871;35872;35873;35874	49100;49101;49102;49103;49104	49104			5	
AVILVHDIKK	2	Acetyl (K)	1176.723	0.72304386	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.148	46.42	3	0.013337	25107	160513_QHF_FH_JSI11Kac_6	47.971	25.633			0.72185	0.72862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72185	0.72862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4773500	3653400	1120200	0	0	0	0	0	0	4773500	3653400	1120200	0	0	0	5752	3516	5431	35875	49105	49105	2878		1	
AVIMFGVPYVYTQSR	0	Unmodified	1729.8862	0.8861628	1134	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		86.486	79.149	2;3	2.2428E-10	43359	160513_QHF_FH_JSI11Kac_6	140.31	106.43			0.89857	0.91539	3.5672	4	2	Linear	1.1479	0.98889	NaN	1	0	Median	0.79898	0.928	3.3343	2	2	Median	0.9727	0.94384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	324380000	168410000	155970000	38854000	16378000	22476000	216030000	119260000	96774000	69501000	32780000	36721000	0	0	0	5753	1134	5432	35876;35877;35878;35879;35880	49106;49107;49108;49109;49110	49106			5	
AVINSAGYK	1	Unmodified	921.49198	0.4919813	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.61	4	4	3				1	1		4	3	3	3	20.917	18.771	2	4.4767E-06	15582	160511_QHF_FH_JSI12i_2	119.17	58.879			0.93843	0.86921	23.375	11	3	Median	1.1167	0.94005	12.5	4	1	Linear	1.0362	1.267	46.131	2	1	Median	0.93843	0.94353	12.275	3	1	Median	0.76089	0.81707	3.6753	2	0	Median	1115600000	597350000	518290000	278220000	145690000	132530000	272000000	156300000	115700000	311920000	147580000	164330000	253500000	147780000	105730000	5754	4260	5433	35881;35882;35883;35884;35885;35886;35887;35888;35889;35890;35891;35892;35893	49111;49112;49113;49114;49115;49116;49117;49118;49119;49120;49121;49122;49123;49124;49125;49126;49127	49114			17	
AVIPGLR	0	Unmodified	724.45956	0.45955895	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			42.645	41.112	2	0.011095	34289	160511_QHF_FH_JSI10i_3	71.995	10.99			1.0504	1.2435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0504	1.2435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15491000	6833900	8657400	0	0	0	15491000	6833900	8657400	0	0	0	0	0	0	5755	2327	5434	35894	49128	49128			1	
AVIQHFQEK	1	Unmodified	1098.5822	0.58219329	823	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	2	4	2	17.083	16.682	2;3	2.1921E-06	13220	160511_QHF_FH_JSI12i_3	126.41	115.7			1.2335	1.2711	40.372	8	5	Median	2.7187	2.2722	NaN	1	1	Median	1.3134	1.5134	35.774	2	1	Median	1.4812	1.3749	37.123	3	3	Median	0.81556	0.8441	4.2178	2	0	Median	496680000	253800000	242890000	19378000	5707000	13671000	73492000	42103000	31388000	200800000	100880000	99923000	203010000	105110000	97903000	5756	823	5435	35895;35896;35897;35898;35899;35900;35901;35902;35903	49129;49130;49131;49132;49133;49134;49135;49136;49137;49138	49136			10	
AVIQVSQIVAR	0	Unmodified	1182.7085	0.70845643	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.02		1	3				1	4	1	2	4	3	1	63.617	57.504	2	1.799E-13	48006	160511_QHF_FH_JSI10i_3	152.34	109.09			0.99099	1.1158	14.561	9	2	Median	1.4881	1.2487	1.8288	2	0	Median	0.93844	1.089	10.787	4	0	Median	1.147	1.0922	18.986	2	2	Median	0.7732	0.85317	NaN	1	0	Median	396200000	192400000	203790000	75095000	28250000	46845000	222680000	114790000	107890000	87714000	43656000	44058000	10708000	5708500	4999700	5757	3278	5436	35904;35905;35906;35907;35908;35909;35910;35911;35912;35913	49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149;49150	49140			11	
AVISYTEGLK	1	Unmodified	1079.5863	0.58627561	730	O95801	TTC4	Tetratricopeptide repeat protein 4	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		55.913	45.007	2	0.0083568	26038	160513_QHF_FH_JSI11Kac_4	57.96	34.531			0.70733	0.70305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70733	0.70305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3379300	2032600	1346600	0	0	0	0	0	0	3379300	2032600	1346600	0	0	0	5758	730	5437	35914	49151;49152	49152			2	
AVITSLLDQIPEMFADTR	0	Unmodified	2019.0347	0.034677532	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.51	102.51	3	6.6923E-05	91711	160511_QHF_FH_JSI11i_3	62.203	56.738			1.9485	1.8448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9485	1.8448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37359000	11668000	25692000	0	0	0	0	0	0	37359000	11668000	25692000	0	0	0	5759	1814	5438	35915	49153	49153			1	
AVIVIQDIFGWQLPNTR	0	Unmodified	1969.0785	0.078531678	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.9	6.73		4							7	3	4	2	2	98.798	93.51	2;3	9.8294E-97	52706	160513_QHF_FH_JSI10Kac_6	287.14	223.51			1.3964	1.2784	30.811	11	2	Linear	1.2905	1.0821	18.469	3	0	Plateau	0.77641	0.91871	25.115	4	1	Linear	0.69589	0.67606	64.033	2	1	Median	0.9219	0.97462	14.159	2	0	Median	3865700000	1989700000	1876000000	1631200000	762750000	868470000	997690000	597570000	400120000	529700000	285870000	243830000	707100000	343540000	363550000	5760	4027	5439	35916;35917;35918;35919;35920;35921;35922;35923;35924;35925;35926	49154;49155;49156;49157;49158;49159;49160;49161;49162	49160			9	
AVIVKPVR	1	Acetyl (K)	922.59639	0.59638679	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	47.985	37.65	2	0.007147	21319	160513_QHF_FH_JSI10Kac_4	80.462	53.86			1.013	0.96256	14.139	7	0	Median	1.0229	0.84501	NaN	1	0	Median	0.7516	0.8948	2.4969	2	0	Median	0.9877	0.97784	2.228	2	0	Median	1.0754	1.1827	9.9188	2	0	Median	47918000	25318000	22600000	5256000	2742000	2514000	13614000	8010700	5603800	14801000	7521400	7279400	14247000	7043700	7202800	5761	2174	5440	35927;35928;35929;35930;35931;35932;35933	49163;49164;49165;49166;49167;49168;49169	49165	2291		7	
AVIVLVENFYK	1	Unmodified	1293.7333	0.7332742	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	2	3	3	87.763	84.441	2	7.5515E-15	41872	160513_QHF_FH_JSI9Kac_6	156.01	115.02			0.93787	1.0363	21.983	9	0	Median	0.87858	0.73981	3.3902	2	0	Median	0.87713	1.0858	NaN	1	0	Median	1.3278	1.2669	13.731	3	0	Median	0.90156	0.96866	14.678	3	0	Plateau	1262900000	587050000	675830000	485710000	230000000	255720000	70076000	38793000	31283000	430490000	181690000	248800000	276600000	136570000	140030000	5762	4073	5441	35934;35935;35936;35937;35938;35939;35940;35941;35942;35943	49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182	49181			12	
AVIVPGNGGGDVTTHGWYGWVK	1	Unmodified	2269.128	0.12800107	579	O75884	RBBP9	Putative hydrolase RBBP9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	79.427	74.914	3	6.7234E-22	39854	160513_QHF_FH_JSI10Kac_6	136.04	127.22			0.96301	0.95349	16.862	8	2	Median	0.98168	0.83471	4.1397	2	1	Median	0.93116	1.0942	4.7884	2	0	Median	0.85757	0.81114	2.7882	2	0	Median	1.0891	1.136	8.6566	2	1	Median	553550000	266440000	287110000	35514000	14745000	20769000	118040000	60085000	57960000	171120000	90896000	80224000	228870000	100710000	128160000	5763	579	5442	35944;35945;35946;35947;35948;35949;35950;35951	49183;49184;49185;49186;49187;49188;49189;49190;49191;49192	49192			10	
AVIWPQYVK	1	Unmodified	1102.6175	0.61751616	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	63.329	62.654	2	1.9027E-05	54450	160511_QHF_FH_JSI11i_2	107.43	91.227			0.95744	1.1538	18.623	7	0	Median	0.86615	0.74357	NaN	1	0	Median	1.0396	1.2362	9.7595	2	0	Median	1.0744	1.0658	11.389	2	0	Median	1.0398	1.127	7.8029	2	0	Median	648630000	327000000	321630000	86023000	44280000	41744000	142430000	71982000	70447000	184610000	91486000	93124000	235570000	119250000	116320000	5764	4694	5443	35952;35953;35954;35955;35956;35957;35958	49193;49194;49195;49196;49197;49198	49197			6	
AVIYNPATQADWTAK	1	Unmodified	1647.8257	0.82567103	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.245	61.595	2	0.0029508	56079	160511_QHF_FH_JSI12i_1	65.842	50.576			0.96033	1.0015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96033	1.0015	NaN	1	1	Median	20049000	6466200	13583000	0	0	0	0	0	0	0	0	0	20049000	6466200	13583000	5765	1437	5444	35959	49199	49199			1	
AVKDELLGEKPEVK	3	Unmodified	1553.8665	0.86647322	912	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		36.886	36.157	4	0.00087792	30219	160511_QHF_FH_JSI10i_3	66.797	53.964			0.54893	0.57903	35.66	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37947	0.44998	NaN	1	1	Median	0.79406	0.7451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	135640000	72568000	63071000	0	0	0	15406000	10564000	4842300	120230000	62004000	58229000	0	0	0	5766	912	5445	35960;35961	49200;49201	49201			2	
AVKHAEELER	1	Acetyl (K)	1222.6306	0.63060004	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		23.298	13.867	2;3	0.00092378	9643	160513_QHF_FH_JSI11Kac_5	68.44	29.175			0.23513	0.2296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23513	0.2296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14228000	12103000	2124700	0	0	0	0	0	0	14228000	12103000	2124700	0	0	0	5767	5295	5446	35962;35963	49202;49203	49202	3358		2	
AVKYVECSALTQK	2	Acetyl (K)	1537.781	0.78102903	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	1	0	0	1			By MS/MS		14	0							2					2		58.268	47.284	2	0.00014814	27088	160513_QHF_FH_JSI11Kac_4	101.95	68.545			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3440300	3440300	0	0	0	0	0	0	0	3440300	3440300	0	0	0	0	5768	1924	5447	35964;35965	49204;49205	49204	1933		2	
AVLAACSHYFK	1	Unmodified	1265.6227	0.62267789	259	O15156	ZBTB7B	Zinc finger and BTB domain-containing protein 7B	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	38.321	37.278	3	0.00073086	31710	160511_QHF_FH_JSI12i_3	56.225	47.712			1.3815	1.1567	28.734	3	0	Median	1.3815	1.1567	NaN	1	0	Median	0.8427	0.94439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4995	1.665	NaN	1	0	Median	107500000	47334000	60162000	14864000	5662400	9201700	21383000	9362500	12021000	0	0	0	71248000	32309000	38939000	5769	259	5448	35966;35967;35968	49206	49206			1	
AVLAASSSYFR	0	Unmodified	1170.6033	0.60332266	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.24			2					3	4	2	2	3	2	57.071	49.328	2	2.1637E-09	27094	160513_QHF_FH_JSI10Kac_6	126.07	100.51			1.009	0.99418	13.146	9	2	Median	1.0723	0.90392	13.461	2	0	Median	0.73446	0.86967	1.5973	2	0	Median	1.1089	1.19	10.906	3	2	Plateau	0.98452	1.0146	1.7023	2	0	Median	262150000	131500000	130650000	44359000	23606000	20753000	41051000	22666000	18385000	94321000	42825000	51495000	82420000	42402000	40018000	5770	4217	5449	35969;35970;35971;35972;35973;35974;35975;35976;35977	49207;49208;49209;49210;49211;49212;49213;49214;49215;49216;49217	49217			11	
AVLADWVSGK	1	Unmodified	1044.5604	0.56039521	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				60.372	59.4	2	0.0076537	52207	160511_QHF_FH_JSI9i_2	52.579	35.183			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5771	5041	5450	35978	49218	49218			1	
AVLAESYER	0	Unmodified	1036.5189	0.51892433	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.43	5.75	1	4					1	1		1	2	2	2	28.879	25.541	2	3.7308E-06	21436	160511_QHF_FH_JSI11i_2	121.85	96.927			1.0958	1.1549	3.1816	7	0	Median	1.3206	1.1518	NaN	1	0	Median	0.92	1.1129	5.2949	2	0	Median	1.1727	1.1696	1.7838	2	0	Median	1.0709	1.1599	1.0041	2	0	Median	703280000	352380000	350910000	124320000	60369000	63946000	139620000	71868000	67754000	256380000	134550000	121830000	182970000	85593000	97372000	5772	1194	5451	35979;35980;35981;35982;35983;35984;35985	49219;49220;49221;49222	49220			4	
AVLAGLR	0	Unmodified	698.44391	0.44390889	441	O60704	TPST2	Protein-tyrosine sulfotransferase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			41.937	33.32	2	0.0097663	18524	160513_QHF_FH_JSI10Kac_6	87.839	9.6736			0.013209	0.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.013209	0.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33524000	33193000	330970	0	0	0	33524000	33193000	330970	0	0	0	0	0	0	5773	441	5452	35986	49223	49223			1	
AVLAGQFVK	1	Unmodified	931.5491	0.54910224	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				44.348	43.294	2	0.0051199	37895	160511_QHF_FH_JSI9i_2	64.757	36.651			0.56261	0.49333	NaN	1	1	Median	0.56261	0.49333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17612000	11391000	6220500	17612000	11391000	6220500	0	0	0	0	0	0	0	0	0	5774	5270	5453	35987	49224	49224			1	
AVLALGGSLAGSAAEASHLVTDR	0	Unmodified	2165.144	0.14404506	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			90.264	89.161	3	2.5587E-16	73106	160511_QHF_FH_JSI9i_3	114.88	105.35			1.2404	1.1951	15.948	2	2	Median	1.3335	1.0677	NaN	1	1	Median	1.1537	1.3378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67062000	35807000	31255000	24462000	11266000	13196000	42600000	24541000	18059000	0	0	0	0	0	0	5775	2557	5454	35988;35989	49225;49226	49226			2	
AVLAPLIALVYSVPR	0	Unmodified	1580.9654	0.9653994	5557	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	3	3	2	99.374	92.619	2;3	1.0084E-52	51110	160513_QHF_FH_JSI11Kac_6	199.49	150.85			0.89249	0.90147	35.944	10	0	Median	1.3967	1.2099	3.0838	2	0	Median	0.90489	1.0831	15.005	3	0	Plateau	0.9358	0.89815	54.357	3	0	Plateau	0.85567	0.89893	0.92088	2	0	Median	2696700000	1398200000	1298500000	669920000	288290000	381620000	517010000	267540000	249470000	1111000000	602860000	508140000	398810000	239540000	159270000	5776	5557	5455	35990;35991;35992;35993;35994;35995;35996;35997;35998;35999	49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243	49228			17	
AVLASMDNENMHTPDIGGQGTTSEAIQDVIR	0	Oxidation (M)	3285.5242	0.524169	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	77.123	76.99	3	1.0824E-09	68726	160511_QHF_FH_JSI11i_3	66.083	63.633			1.2891	1.2651	3.2468	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4317	1.2945	NaN	1	0	Median	1.1607	1.2364	NaN	1	0	Median	55418000	21538000	33880000	0	0	0	0	0	0	34675000	13849000	20826000	20743000	7689500	13053000	5777	1738	5456	36000;36001	49244;49245;49246	49245		1422;1423	3	
AVLASMDNENMHTPDIGGQGTTSEAIQDVIR	0	Unmodified	3269.5293	0.52925438	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	83.652	83.029	3	7.0363E-18	75419	160511_QHF_FH_JSI10i_1	98.236	89.015			0.91831	1.0392	1.3682	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89882	1.0493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93822	1.0292	NaN	1	0	Median	93875000	40572000	53303000	0	0	0	56799000	27473000	29325000	0	0	0	37077000	13098000	23978000	5778	1738	5456	36002;36003	49247;49248;49249	49248			3	
AVLDELGRR	0	Unmodified	1027.5774	0.57744226	1901	P58557	YBEY	Putative ribonuclease	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				30.817	29.424	3	3.3178E-06	23950	160511_QHF_FH_JSI9i_3	98.033	75.947			1.0509	0.84475	NaN	1	0	Median	1.0509	0.84475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48145000	21282000	26863000	48145000	21282000	26863000	0	0	0	0	0	0	0	0	0	5779	1901	5457	36004	49250	49250			1	
AVLDLESERR	0	Unmodified	1186.6306	0.63060004	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		30.41	29.61	3	0.0020007	25466	160511_QHF_FH_JSI11i_3	50.452	35.772			1.0627	0.98882	10.416	3	0	Plateau	1.2382	1.0489	NaN	1	0	Median	1.0519	1.2108	NaN	1	0	Median	1.0627	0.98882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	202170000	89313000	112860000	52409000	24475000	27934000	51718000	26698000	25020000	98044000	38140000	59904000	0	0	0	5780	2540	5458	36005;36006;36007	49251;49252;49253	49251			3	
AVLDSYEYFAVLAAK	1	Unmodified	1658.8556	0.85557418	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.172	81.865	2	1.6819E-74	43727	160513_QHF_FH_JSI12Kac_6	226.4	183.12			0.93689	1.0655	23.484	4	0	Median	0.80078	0.68565	NaN	1	0	Median	0.90604	1.0867	NaN	1	0	Median	1.1703	1.1421	NaN	1	0	Median	0.96879	1.0448	NaN	1	0	Median	150220000	74537000	75685000	39830000	19372000	20458000	40543000	22204000	18339000	44911000	21674000	23237000	24938000	11287000	13651000	5781	2106	5459	36008;36009;36010;36011	49254;49255;49256;49257;49258;49259	49258			6	
AVLEALGSCLNNK	1	Unmodified	1387.7129	0.71294946	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	59.457	59.078	2	1.7537E-10	50783	160511_QHF_FH_JSI12i_3	150.1	119.54			1.2453	1.0967	19.326	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74676	0.92623	NaN	1	0	Median	0.99713	0.92815	NaN	1	0	Median	1.3023	1.2958	NaN	1	0	Median	195830000	76938000	118890000	0	0	0	24528000	13211000	11318000	67426000	27414000	40012000	103880000	36313000	67564000	5782	1414	5460	36012;36013;36014	49260;49261;49262;49263;49264	49264			5	
AVLEEGTDVVIK	1	Unmodified	1271.6973	0.69728262	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.8	53.136	2	1.2291E-10	48387	160511_QHF_FH_JSI12i_1	142.83	80.28			0.48565	0.54321	19.084	4	2	Median	0.45446	0.37766	NaN	1	1	Median	0.46074	0.55006	NaN	1	0	Median	0.58876	0.56855	NaN	1	1	Median	0.5119	0.53645	NaN	1	0	Median	911980000	587220000	324760000	162460000	102220000	60236000	222080000	139960000	82123000	212790000	132460000	80339000	314650000	212590000	102060000	5783	4983	5461	36015;36016;36017;36018	49265;49266;49267;49268;49269;49270	49267			6	
AVLENNLGAAVLR	0	Unmodified	1338.7619	0.76194857	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							1	3	2	3	64.042	63.428	2;3	1.3967E-41	55208	160511_QHF_FH_JSI11i_2	209.85	175.46			1.1386	1.1927	20.099	8	3	Median	1.4202	1.1854	NaN	1	0	Median	0.90688	1.0946	7.0146	2	1	Median	1.3204	1.2691	7.9237	2	0	Median	1.084	1.2181	33.222	3	2	Median	1564800000	693530000	871260000	226460000	103620000	122840000	336390000	187180000	149210000	505620000	191900000	313710000	496310000	210820000	285490000	5784	5160	5462	36019;36020;36021;36022;36023;36024;36025;36026;36027	49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281	49277			11	
AVLFCLSEDK	1	Unmodified	1180.5798	0.57981002	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.29	2	3	3					5		3	4	3	3	66.269	62.172	2	9.8405E-10	53923	160511_QHF_FH_JSI11i_2	155.1	138.9			1.2107	1.2357	22.436	12	1	Median	1.2155	1.0035	20.848	3	0	Median	0.98935	1.1679	20.796	4	0	Median	1.0486	1.0653	30.194	2	1	Median	1.2896	1.4136	3.0986	3	0	Median	1761000000	794290000	966670000	214540000	90341000	124200000	178420000	88387000	90037000	546560000	277720000	268840000	821440000	337840000	483600000	5785	1236	5463	36028;36029;36030;36031;36032;36033;36034;36035;36036;36037;36038;36039;36040	49282;49283;49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298;49299;49300	49293			19	
AVLFCLSEDKK	2	Unmodified	1308.6748	0.67477304	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.47		8	8					4	7	6	8	7	6	54.551	50.194	2;3	2.6987E-48	42656	160511_QHF_FH_JSI12i_3	223.08	204.64			1.0577	1.0989	46.949	26	7	Median	1.2799	1.0783	13.411	6	1	Median	1.0418	1.2107	34.436	7	2	Median	0.82001	0.78054	65.113	7	3	Median	1.2536	1.277	45.247	6	1	Median	10996000000	5423000000	5572600000	650300000	300520000	349780000	1940200000	941290000	998870000	4122000000	2101800000	2020200000	4283100000	2079400000	2203700000	5786	1236	5464	36041;36042;36043;36044;36045;36046;36047;36048;36049;36050;36051;36052;36053;36054;36055;36056;36057;36058;36059;36060;36061;36062;36063;36064;36065;36066;36067	49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311;49312;49313;49314;49315;49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335;49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348;49349;49350;49351;49352;49353;49354;49355	49346			55	
AVLFCLSEDKK	2	Acetyl (K)	1350.6853	0.68533773	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.97	65.305	2	0.0067239	34796	160513_QHF_FH_JSI11Kac_5	71.349	42.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1536700	1536700	0	0	0	0	0	0	0	1536700	1536700	0	0	0	0	5787	1236	5464	36068	49356	49356	1124;1125		1	
AVLGANDPEK	1	Unmodified	1012.5189	0.51892433	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.949	18.452	2	5.1437E-06	15934	160511_QHF_FH_JSI12i_1	137.14	82.93			1.1152	1.0341	14.912	4	3	Median	1.1298	0.94583	NaN	1	0	Median	0.84573	1.0006	NaN	1	1	Median	1.1007	1.0687	NaN	1	1	Median	1.2808	1.3295	NaN	1	1	Median	1621900000	793000000	828870000	345820000	144590000	201230000	405870000	224680000	181190000	359750000	193040000	166720000	510430000	230700000	279730000	5788	2701	5465	36069;36070;36071;36072	49357;49358;49359;49360	49358			4	
AVLGEVK	1	Unmodified	714.42759	0.42759012	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.8	6	4	3				3	1	1	4	4	7	3	22.254	19.454	2	0.0024983	17589	160511_QHF_FH_JSI12i_1	110.61	20.938			0.72082	0.7717	27.104	18	5	Median	0.98838	0.81209	34.52	4	1	Median	0.62003	0.73946	13.588	4	1	Median	0.69434	0.67404	35.409	7	3	Median	0.73183	0.79758	7.993	3	0	Median	9452800000	4880700000	4572100000	1919800000	931190000	988600000	2184800000	1169000000	1015800000	3163800000	1531100000	1632700000	2184500000	1249400000	935020000	5789	1284	5466	36073;36074;36075;36076;36077;36078;36079;36080;36081;36082;36083;36084;36085;36086;36087;36088;36089;36090	49361;49362;49363;49364;49365;49366;49367;49368;49369;49370;49371;49372;49373;49374;49375;49376;49377;49378;49379;49380;49381;49382;49383;49384;49385;49386	49370			26	
AVLGEVVLYSGAR	0	Unmodified	1332.7402	0.74015049	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		71.042	60.263	2	0.046028	32965	160513_QHF_FH_JSI11Kac_4	37.556	26.066			1.3166	1.3047	5.9672	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1918	1.4406	NaN	1	0	Median	1.3237	1.2994	0.57381	2	0	Median	NaN	NaN	NaN	0	0	Median	44075000	22790000	21285000	0	0	0	6435500	3914000	2521500	37640000	18876000	18763000	0	0	0	5790	1283	5467	36091;36092;36093	49387	49387			1	
AVLGEVVLYSGARPLSHQPGPEAPALPK	1	Unmodified	2852.5549	0.55486291	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	4	2	1	78.7	74.194	3;4	2.9406E-135	39213	160513_QHF_FH_JSI10Kac_6	256.24	238.14			0.93264	0.95706	8.0567	10	1	Median	1.1315	0.98055	10.392	3	1	Median	0.80143	0.91174	2.5396	4	0	Linear	1.1246	1.0451	7.6316	2	0	Median	0.818	0.85765	NaN	1	0	Median	1811600000	950590000	861040000	431420000	200200000	231220000	1063500000	574420000	489040000	279250000	153180000	126070000	37493000	22787000	14705000	5791	1283	5468	36094;36095;36096;36097;36098;36099;36100;36101;36102;36103	49388;49389;49390;49391;49392;49393;49394;49395;49396;49397;49398;49399;49400;49401;49402;49403;49404;49405;49406;49407;49408;49409;49410	49410			23	
AVLGSSPFLSEANAER	0	Unmodified	1646.8264	0.82639932	3677	Q8NI60	ADCK3	Atypical kinase ADCK3, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	64.221	63.813	2	3.3054E-08	56626	160511_QHF_FH_JSI11i_3	167.3	130.61			1.0412	1.0322	13.254	3	0	Plateau	1.4946	1.2934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0412	0.99263	NaN	1	0	Median	1.0425	1.1191	NaN	1	0	Median	123310000	61737000	61576000	19508000	8180500	11328000	0	0	0	56041000	25287000	30754000	47764000	28269000	19495000	5792	3677	5469	36104;36105;36106	49411;49412;49413	49411			2	
AVLGSVER	0	Unmodified	829.46577	0.46576654	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	20.558	19.914	2	0.023449	16279	160511_QHF_FH_JSI12i_3	43.124	6.9381			1.0387	1.0853	13.97	5	0	Median	1.4326	1.2159	NaN	1	0	Median	0.87669	1.078	NaN	1	0	Median	1.3753	1.3962	NaN	1	0	Median	0.94761	1.0241	8.1984	2	0	Median	544110000	277050000	267060000	26863000	11485000	15378000	24894000	12356000	12538000	85466000	29683000	55783000	406880000	223530000	183360000	5793	4495	5470	36107;36108;36109;36110;36111	49414	49414			1	
AVLGTIHPDPEIEESK	1	Unmodified	1733.8836	0.88357984	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	51.007	50.262	3	1.5614E-07	43026	160511_QHF_FH_JSI12i_3	110.38	99.916			1.0082	1.0418	18.154	3	1	Plateau	0.9182	0.77705	NaN	1	0	Median	0.87307	1.083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0082	1.0418	NaN	1	0	Median	242010000	116910000	125100000	35524000	19389000	16135000	61137000	35316000	25821000	0	0	0	145350000	62204000	83145000	5794	2899	5471	36112;36113;36114	49415;49416;49417;49418;49419	49418			5	
AVLGTSNFK	1	Unmodified	935.50763	0.50763136	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.55	3	4	4				3	4	4	4	6	6	6	36.991	31.802	2	9.1281E-07	27139	160511_QHF_FH_JSI11i_3	151.27	111.73			0.90509	0.87909	13.775	22	1	Median	1.1656	0.96306	13.197	4	0	Linear	0.72328	0.8563	11.055	6	1	Median	0.94525	0.93876	11.18	6	0	Median	0.89881	0.97776	17.059	6	0	Median	7820600000	3825300000	3995300000	980900000	420910000	559990000	1639100000	867790000	771310000	2346100000	1151800000	1194300000	2854500000	1384700000	1469700000	5795	793	5472	36115;36116;36117;36118;36119;36120;36121;36122;36123;36124;36125;36126;36127;36128;36129;36130;36131;36132;36133;36134;36135;36136	49420;49421;49422;49423;49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435;49436;49437;49438;49439;49440;49441;49442;49443;49444;49445;49446;49447;49448;49449;49450;49451;49452;49453;49454;49455;49456	49420			37	
AVLHPTAPLYDPEAK	1	Unmodified	1620.8512	0.8511575	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	51.048	50.356	2;3	2.6753E-05	43092	160511_QHF_FH_JSI12i_3	83	61.699			0.98571	0.94102	23.059	6	1	Median	1.0025	0.87951	NaN	1	0	Median	0.96924	1.1887	NaN	1	0	Median	0.8376	0.81423	30.025	2	0	Median	0.9204	0.96483	27.259	2	1	Median	857020000	447350000	409680000	99251000	48267000	50983000	131420000	72316000	59103000	306150000	171640000	134510000	320200000	155120000	165080000	5796	3441	5473	36137;36138;36139;36140;36141;36142;36143	49457;49458;49459;49460;49461;49462;49463	49463			6	
AVLHPTGPLYCPEEK	1	Unmodified	1709.8447	0.84469192	3442	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.959	44.721	3	4.2982E-05	38230	160511_QHF_FH_JSI12i_3	79.652	68.038			0.97795	1.0079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97795	1.0079	NaN	1	0	Median	37196000	19304000	17892000	0	0	0	0	0	0	0	0	0	37196000	19304000	17892000	5797	3442	5474	36144	49464	49464			1	
AVLHQPLK	1	Unmodified	904.54944	0.54943659	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			5							1	1	1	2	16.644	16.227	2;3	0.0026644	12757	160511_QHF_FH_JSI12i_3	86.086	62.114			0.89834	0.94485	21.802	5	1	Median	1.518	1.2486	NaN	1	0	Median	0.82693	0.94485	NaN	1	0	Median	1.2405	1.1578	NaN	1	0	Median	0.75155	0.81291	18.006	2	1	Median	791270000	402550000	388710000	136050000	60049000	76005000	152220000	82504000	69712000	159620000	76583000	83035000	343380000	183420000	159960000	5798	614	5475	36145;36146;36147;36148;36149	49465;49466	49465			1	
AVLHVALR	0	Unmodified	877.54977	0.54977095	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.19	6.74		7	6					1	12	8	9	5	4	36.893	32.041	2;3	2.2118E-08	17947	160513_QHF_FH_JSI11Kac_6	149.06	67.276		+	1.0594	0.99121	27.497	23	2	Median	1.1054	0.92476	7.1557	7	0	Median	0.7468	0.84878	42.365	8	2	Median	1.1597	1.0908	28.344	5	0	Median	0.90131	0.92715	15.291	3	0	Plateau	19193000000	9222400000	9970200000	5723000000	2582400000	3140600000	7192600000	3508700000	3683900000	3789500000	1828800000	1960700000	2487600000	1302600000	1185000000	5799	856;75	5476	36150;36151;36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169;36170;36171;36172;36173;36174;36175	49467;49468;49469;49470;49471;49472;49473;49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509;49510;49511;49512;49513	49479			45	
AVLIAGQPGTGK	1	Unmodified	1110.6397	0.63970816	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	5.92	4	4	5			3	3	3		4	6	7	5	36.324	32.526	2	1.3565E-07	27485	160511_QHF_FH_JSI11i_2	175.88	166.67			1.0053	0.97602	26.708	20	3	Median	1.052	0.88704	8.3768	4	0	Median	0.78805	0.97264	26.957	5	1	Median	1.0457	1.0192	34.972	6	2	Median	1.0403	1.156	18.957	5	0	Median	2898900000	1467000000	1431800000	540380000	238100000	302270000	754030000	421280000	332750000	833160000	417370000	415790000	771320000	390290000	381030000	5800	5487	5477	36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187;36188;36189;36190;36191;36192;36193;36194;36195;36196;36197	49514;49515;49516;49517;49518;49519;49520;49521;49522;49523;49524;49525;49526;49527;49528;49529;49530;49531;49532;49533;49534;49535;49536;49537;49538;49539;49540;49541;49542;49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553	49541			40	
AVLIDKDQSPK	2	Acetyl (K)	1254.682	0.68196691	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.687					1	3	2				3	1	2	48.817	39.152	2	1.2484E-11	21108	160513_QHF_FH_JSI10Kac_3	145.34	99.343			0.85748	0.91961	10.948	5	0	Median	NaN	NaN	NaN	0	0	Median	0.7167	0.83361	8.6344	2	0	Median	1.0377	0.99968	NaN	1	0	Median	0.90276	0.97616	8.4405	2	0	Median	37719000	18635000	19084000	0	0	0	14939000	8253400	6685800	7219400	3087900	4131400	15561000	7294000	8266600	5801	3075	5478	36198;36199;36200;36201;36202;36203	49554;49555;49556;49557;49558;49559;49560;49561;49562;49563	49563	2762		10	
AVLIMYK	1	Unmodified	836.483	0.48299651	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	5.55			4				2	4	4	3	4	4	3	55.792	48.271	2	0.0012098	25498	160513_QHF_FH_JSI9Kac_6	109.88	81.352			1.2113	1.2149	22.529	14	5	Median	1.1876	1.0001	17.515	3	2	Plateau	0.98049	1.1785	13.169	4	1	Median	1.3109	1.2753	18.906	4	0	Median	1.5663	1.6841	33.357	3	2	Median	694250000	318160000	376090000	176800000	84522000	92276000	173250000	86774000	86472000	258740000	107690000	151040000	85469000	39168000	46301000	5802	179	5479	36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216;36217	49564;49565;49566;49567;49568;49569;49570;49571;49572;49573;49574;49575;49576;49577;49578;49579;49580	49574			17	
AVLIMYK	1	Oxidation (M)	852.47791	0.47791114	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.737							2	4	3	2	2	3	2	47.306	37.263	2	0.009129	19129	160513_QHF_FH_JSI10Kac_5	80.377	64.223			1.0666	1.0199	15.813	9	0	Median	1.1456	0.98828	8.5567	2	0	Median	1.0391	1.2314	26.65	2	0	Median	1.0823	1.0725	12.665	3	0	Plateau	0.86018	0.94401	2.7433	2	0	Median	150180000	74483000	75700000	47157000	23613000	23544000	23618000	12769000	10849000	56132000	26782000	29351000	23277000	11320000	11957000	5803	179	5479	36218;36219;36220;36221;36222;36223;36224;36225;36226	49581;49582;49583;49584;49585;49586;49587;49588;49589;49590;49591;49592	49589		74	12	
AVLIPHHK	1	Unmodified	913.54977	0.54977095	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	12.546	12.25	2;3	0.0025673	8956	160511_QHF_FH_JSI12i_3	88.734	39.376			0.92106	0.92535	32.348	5	0	Median	0.77155	0.6281	NaN	1	0	Median	0.5617	0.61938	NaN	1	0	Median	1.3826	1.2451	NaN	1	0	Median	1.0122	1.0189	13.62	2	0	Median	1059500000	596750000	462740000	35848000	21316000	14532000	29489000	19418000	10071000	52401000	20636000	31765000	941750000	535380000	406380000	5804	5755	5480	36227;36228;36229;36230;36231;36232	49593;49594;49595;49596;49597	49597			5	
AVLITDQSILK	1	Unmodified	1199.7125	0.71253876	1276	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.38	5.91	1	4					3			1	2	3	2	69.314	64.812	2	2.7135E-05	34696	160513_QHF_FH_JSI11Kac_4	101.65	52.852			0.93836	0.89354	31.184	8	2	Median	1.0168	0.86088	NaN	1	0	Median	0.49294	0.59546	27.978	2	1	Median	0.95277	0.94208	0.83667	3	1	Plateau	1.0379	1.1219	41.15	2	0	Median	189220000	103980000	85240000	29201000	15134000	14067000	25175000	15757000	9418000	93265000	50277000	42987000	41575000	22808000	18767000	5805	1276	5481	36233;36234;36235;36236;36237;36238;36239;36240	49598;49599;49600;49601;49602;49603;49604	49601			7	
AVLKFAAATGATPIAGR	1	Acetyl (K)	1655.9359	0.93589019	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.918	68.6	2	2.6227E-55	37495	160513_QHF_FH_JSI11Kac_6	196.11	151.35			0.34361	0.33519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34361	0.33519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31823000	26086000	5736800	0	0	0	0	0	0	31823000	26086000	5736800	0	0	0	5806	917	5482	36241	49605	49605	674		1	
AVLKGVHSHK	2	Acetyl (K)	1116.6404	0.64037687	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		16.894	7.6677	3	0.039127	6340	160513_QHF_FH_JSI11Kac_6	33.89	18.009			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5807	2017	5483	36242	49606	49606			1	
AVLKWADGK	2	Acetyl (K)	1028.5655	0.56548059	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		58.619	47.753	2	0.032223	26160	160513_QHF_FH_JSI11Kac_5	57.859	42.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3894200	3894200	0	0	0	0	0	0	0	3894200	3894200	0	0	0	0	5808	1609	5484	36243;36244	49607;49608	49607			2	
AVLLAGPPGTGK	1	Unmodified	1079.6339	0.63389451	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.31	4	4	4				3	6		5	6	5	5	49.051	44.025	2	2.432E-16	38019	160511_QHF_FH_JSI11i_2	166.19	153.15			0.95019	0.97985	25.343	21	8	Median	1.0688	0.88357	22.879	5	2	Median	0.77268	0.91185	34.797	6	3	Median	1.0316	0.97985	12.014	5	2	Median	1.0141	1.0962	6.7891	5	1	Median	4483100000	2300500000	2182700000	808450000	397650000	410800000	1114500000	658350000	456110000	1343600000	651420000	692150000	1216600000	593030000	623620000	5809	5496	5485	36245;36246;36247;36248;36249;36250;36251;36252;36253;36254;36255;36256;36257;36258;36259;36260;36261;36262;36263;36264;36265	49609;49610;49611;49612;49613;49614;49615;49616;49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631;49632;49633;49634;49635;49636;49637;49638	49628			30	
AVLLAVAVK	1	Unmodified	882.59024	0.59023878	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.5		1	4					1	5	2	2	4	3	64.59	59.04	2	9.7995E-06	32050	160513_QHF_FH_JSI11Kac_6	124.37	57.38			1.0821	1.1788	39.632	11	1	Median	1.0937	0.91418	12.351	2	0	Median	0.89231	1.0588	21.078	2	0	Median	1.2494	1.1836	63.74	4	1	Median	1.169	1.1921	5.9608	3	0	Median	363370000	150890000	212480000	55523000	24243000	31280000	84628000	44051000	40577000	111270000	39800000	71475000	111940000	42792000	69151000	5810	4410	5486	36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276	49639;49640;49641;49642;49643;49644;49645;49646;49647;49648;49649	49642			9	
AVLLDLEPR	0	Unmodified	1024.5917	0.59169534	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	65.016	64.252	2	2.8574E-06	55189	160511_QHF_FH_JSI12i_2	124.98	73.129			0.97181	1.0689	29.942	6	1	Median	1.2493	1.0792	NaN	1	0	Median	0.86398	1.0244	7.7695	2	1	Median	1.0005	1.0142	NaN	1	0	Median	1.393	1.5086	50.084	2	0	Median	435870000	225880000	209990000	77557000	34706000	42851000	122440000	63739000	58697000	111150000	57554000	53598000	124720000	69880000	54842000	5811	1223	5487	36277;36278;36279;36280;36281;36282	49650;49651;49652;49653;49654;49655	49651			6	
AVLLGPPGAGK	1	Unmodified	978.58622	0.58621603	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.15	5	4	4				3	3	1	5	5	5	5	45.576	41.401	2	2.4052E-07	35194	160511_QHF_FH_JSI12i_3	121.62	96.696			0.9799	1.0288	17.078	20	0	Median	1.2574	1.002	29.741	5	0	Median	0.91156	1.085	4.4613	5	0	Median	0.98442	0.98447	2.7508	5	0	Median	0.98319	1.089	14.461	5	0	Median	4829900000	2455200000	2374800000	856630000	375370000	481260000	1067600000	564900000	502670000	1473700000	795730000	677990000	1432000000	719150000	712870000	5812	1835	5488	36283;36284;36285;36286;36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302	49656;49657;49658;49659;49660;49661;49662;49663;49664;49665;49666;49667;49668;49669;49670;49671;49672;49673;49674;49675;49676;49677;49678;49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691;49692;49693;49694;49695	49693			40	
AVLLGPPGAGKGTQAPR	1	Acetyl (K)	1630.9155	0.91548909	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	62.885	52.127	2;3	0.0012119	26397	160513_QHF_FH_JSI12Kac_5	59.261	40.203			0.55903	0.61177	55.451	4	2	Median	NaN	NaN	NaN	0	0	Median	0.48767	0.58193	69.598	2	1	Median	0.39787	0.39316	NaN	1	1	Median	0.8963	0.99676	NaN	1	0	Median	12359000	7274300	5084900	0	0	0	6401800	3485700	2916100	1837600	1499500	338120	4119800	2289100	1830700	5813	1835	5489	36303;36304;36305;36306	49696;49697;49698	49697	1845		3	
AVLLLQEK	1	Unmodified	912.56442	0.56441796	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	6.33	6.13		2						1			1	1	1	48.641	47.682	2	0.011409	40910	160511_QHF_FH_JSI11i_2	54.205	19.397			0.87919	0.95384	12.804	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84866	0.87127	NaN	1	0	Median	0.91083	1.0442	NaN	1	0	Median	105770000	51300000	54470000	0	0	0	0	0	0	57935000	29298000	28637000	47835000	22001000	25833000	5814	1621	5490	36307;36308;36309	49699;49700	49699			2	
AVLLTQDTK	1	Unmodified	987.56006	0.56006086	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	7.5	6.5	1						1			1			1	28.883	27.609	2	0.0032261	24012	160511_QHF_FH_JSI9i_1	71.379	32.588			1.2992	1.0489	NaN	1	1	Median	1.2992	1.0489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49681000	22734000	26947000	49681000	22734000	26947000	0	0	0	0	0	0	0	0	0	5815	4460	5491	36310;36311	49701;49702	49701			2	
AVLLVGLCDSGK	1	Unmodified	1230.6642	0.66420836	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	74.843	64.263	2	0.0024844	32082	160513_QHF_FH_JSI10Kac_5	75.294	61.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5816	5669	5492	36312;36313;36314	49703;49704;49705	49705			3	
AVLMENIVYLTNSLELEHIEVK	1	Unmodified	2556.3509	0.35092629	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.959	90.238	3	6.5576E-107	52157	160513_QHF_FH_JSI10Kac_6	240.13	199.32			0.62855	0.74714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62855	0.74714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161290000	100410000	60885000	0	0	0	161290000	100410000	60885000	0	0	0	0	0	0	5817	5215	5493	36315	49706	49706			1	
AVLMSER	0	Unmodified	804.41637	0.41637351	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.442	17.481	2	0.035219	14152	160511_QHF_FH_JSI12i_3	50.855	25.028			0.90837	0.91653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90837	0.91653	NaN	1	1	Median	86193000	40389000	45804000	0	0	0	0	0	0	0	0	0	86193000	40389000	45804000	5818	485	5494	36316	49707	49707			1	
AVLNNVIFCHQEDSNWPLSEGK	1	Unmodified	2556.2067	0.20672167	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			83.292	82.046	3	0.022428	68666	160511_QHF_FH_JSI10i_3	29.84	25.769			0.84743	1.0013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84743	1.0013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15284000	10762000	4522200	0	0	0	15284000	10762000	4522200	0	0	0	0	0	0	5819	3896	5495	36317	49708	49708			1	
AVLNPLCQVDYR	0	Unmodified	1446.7289	0.72893388	2674;2675	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	0	0	0			By MS/MS		3	0			1									1		65.068	65.068	2	0.0057729	57901	160511_QHF_FH_JSI11i_3	53.751	40.159			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5820	2675;2674	5496	36318	49709	49709			1	
AVLNPTNADILIETK	1	Unmodified	1610.8879	0.88793694	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	75.138	74.828	2;3	1.2256E-05	67820	160511_QHF_FH_JSI10i_1	125.54	93.018			0.98506	0.92396	17.136	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.83139	0.96028	29.149	2	1	Median	0.9413	0.89785	NaN	1	0	Median	0.90471	0.95083	NaN	1	0	Median	119840000	62001000	57841000	0	0	0	56939000	27801000	29138000	32800000	17726000	15074000	30103000	16474000	13629000	5821	2549	5497	36319;36320;36321;36322	49710;49711;49712;49713	49712			3	
AVLNPTPIK	1	Unmodified	951.57532	0.57531699	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.32	3	5	1				3			2	3	4	3	40.652	37.93	2	0.00020645	32420	160511_QHF_FH_JSI12i_2	85.064	75.077			0.92741	0.98045	11.775	10	3	Median	1.2374	1.0323	17.692	2	1	Median	0.87115	1.0562	6.1408	2	0	Median	0.9947	0.9717	15.622	4	2	Median	0.85441	0.93784	1.9027	2	0	Median	594000000	303090000	290910000	83396000	41373000	42023000	135850000	70916000	64933000	312200000	156280000	155930000	62546000	34518000	28028000	5822	2128	5498	36323;36324;36325;36326;36327;36328;36329;36330;36331;36332;36333;36334	49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724;49725;49726	49715			13	
AVLPEGQDVTSGFSR	0	Unmodified	1561.7736	0.77363546	2807	Q32P41	TRMT5	tRNA (guanine(37)-N1)-methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		56.6	55.818	2	0.0002709	50564	160511_QHF_FH_JSI11i_1	100.93	80.061			0.98934	0.86336	3.5145	2	1	Median	1.0875	0.88508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90006	0.84217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98119000	49475000	48645000	48319000	25068000	23251000	0	0	0	49800000	24407000	25394000	0	0	0	5823	2807	5499	36335;36336	49727;49728	49727			2	
AVLPTPVTKPK	2	Acetyl (K)	1191.7227	0.72270951	483	O75151	PHF2	Lysine-specific demethylase PHF2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.943					2	3	3	1			3	2	4	62.535	52.511	2	7.8338E-07	27716	160513_QHF_FH_JSI12Kac_3	108.67	82.729			0.9671	1.145	48.233	9	2	Median	NaN	NaN	NaN	0	0	Median	0.84087	1.0063	15.37	3	0	Plateau	0.94567	0.93499	131.57	2	2	Median	1.0152	1.1181	12	4	0	Median	144230000	66995000	77233000	0	0	0	58367000	30878000	27489000	34103000	10017000	24086000	51758000	26100000	25658000	5824	483	5500	36337;36338;36339;36340;36341;36342;36343;36344;36345	49729;49730;49731;49732;49733;49734;49735;49736;49737;49738;49739;49740;49741;49742	49735	247		14	
AVLPTSK	1	Unmodified	714.42759	0.42759012	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	17.087	16.452	2	0.020108	14454	160511_QHF_FH_JSI12i_1	57.281	4.5978			0.75751	0.83841	15.703	7	2	Median	0.94571	0.81292	34.832	2	1	Median	0.69438	0.84334	9.5165	2	1	Median	0.94523	0.92509	NaN	1	0	Median	0.74756	0.80646	5.4951	2	0	Median	464020000	243150000	220870000	94191000	37836000	56355000	163110000	101040000	62071000	110080000	51829000	58252000	96641000	52449000	44192000	5825	4080	5501	36346;36347;36348;36349;36350;36351;36352	49743;49744;49745;49746	49744			4	
AVLPVAESFGFADEIRK	1	Unmodified	1847.9781	0.97814893	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	86.407	85.977	3	1.2292E-06	74742	160511_QHF_FH_JSI12i_3	101.9	84.615			0.67829	0.66172	50.94	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.2483	0.29441	NaN	1	1	Median	0.86456	0.81439	NaN	1	0	Median	0.50142	0.51215	NaN	1	0	Median	198770000	125810000	72967000	0	0	0	54646000	43188000	11458000	75206000	36958000	38247000	68920000	45659000	23261000	5826	3252	5502	36353;36354;36355;36356	49747;49748;49749;49750;49751	49750			5	
AVLQAAR	0	Unmodified	727.43407	0.43407249	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.728	1	2	4							1	3	2	1	11.569	11.234	2	0.0031425	8864	160511_QHF_FH_JSI11i_3	99.511	47.279			0.75333	0.83391	20.049	6	5	Median	0.7198	0.61202	NaN	1	1	Median	0.74984	0.92251	12.04	3	3	Plateau	1.1703	1.0981	NaN	1	1	Median	0.76946	0.8084	NaN	1	0	Median	1550800000	919580000	631190000	250160000	176330000	73822000	434350000	282480000	151870000	329040000	179260000	149790000	537230000	281510000	255720000	5827	5633	5503	36357;36358;36359;36360;36361;36362;36363	49752;49753;49754;49755;49756;49757;49758;49759	49753			8	
AVLQALEVLPVAPPPEPR	0	Unmodified	1895.088	0.088033731	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.75	0.433	1	3									1	2	1	99.05	98.881	3	0.00021625	86805	160511_QHF_FH_JSI11i_2	63.145	52.511			1.2515	1.0386	16.77	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81719	1.0386	NaN	1	1	Median	1.0439	1.015	NaN	1	0	Median	1.2515	1.3719	NaN	1	0	Median	48034000	26195000	21840000	0	0	0	11987000	7495500	4491500	13568000	7944000	5624100	22479000	10755000	11724000	5828	3133	5504	36364;36365;36366;36367	49760;49761;49762;49763	49762			4	
AVLQAVGQLVQK	1	Unmodified	1252.7503	0.75032125	3390	Q86YV9	HPS6	Hermansky-Pudlak syndrome 6 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.971	64.826	2	5.7329E-16	56049	160511_QHF_FH_JSI12i_3	161.79	122.77			0.84495	0.81779	16.166	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98384	0.91682	NaN	1	0	Median	0.72567	0.72946	NaN	1	0	Median	155580000	87352000	68233000	0	0	0	0	0	0	67265000	35066000	32198000	88320000	52285000	36034000	5829	3390	5505	36368;36369	49764;49765	49765			1	
AVLQEEQANLWFSK	1	Unmodified	1661.8413	0.8413211	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		75.258	74.625	2	3.2519E-23	66351	160511_QHF_FH_JSI10i_2	146.5	97.709			1.5371	1.6201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5371	1.6201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37840000	19098000	18742000	0	0	0	0	0	0	37840000	19098000	18742000	0	0	0	5830	3460	5506	36370;36371	49766;49767	49767			2	
AVLQEFGR	0	Unmodified	918.49232	0.49231565	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	37.611	36.849	2	0.001083	32139	160511_QHF_FH_JSI11i_3	94.262	48.544			0.70296	0.79047	21.401	5	0	Median	0.98761	0.83209	NaN	1	0	Median	0.54237	0.67668	NaN	1	0	Median	0.83251	0.81098	39.453	2	0	Median	0.70296	0.79047	NaN	1	0	Median	547380000	314950000	232430000	75627000	38532000	37094000	108300000	72210000	36085000	252270000	139130000	113140000	111180000	65076000	46106000	5831	5565	5507	36372;36373;36374;36375;36376	49768;49769	49768			2	
AVLQFTPASWTYVR	0	Unmodified	1637.8566	0.85657723	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3	1	3	2	1	87.761	83.25	2	2.7971E-67	40714	160513_QHF_FH_JSI12Kac_6	218.15	134.37			0.80991	0.86079	33.121	6	0	Median	1.5089	1.2594	NaN	1	0	Median	0.64182	0.76886	21.967	3	0	Plateau	0.99083	0.96372	NaN	1	0	Median	1.1197	1.1771	NaN	1	0	Median	386050000	217630000	168410000	33470000	14640000	18830000	182700000	115830000	66877000	98489000	52168000	46321000	71385000	34999000	36386000	5832	1631	5508	36377;36378;36379;36380;36381;36382;36383	49770;49771;49772;49773;49774;49775;49776;49777;49778;49779;49780	49778			10	
AVLQLYPENSEQLELITTQATK	1	Unmodified	2488.3061	0.30608459	363	O43709	WBSCR22	Probable 18S rRNA (guanine-N(7))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			96.71	96.486	3	6.6373E-05	87311	160511_QHF_FH_JSI10i_1	57.484	51.321			0.64839	0.63111	8.1172	2	2	Median	0.83019	0.6684	NaN	1	1	Median	0.5064	0.59591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59375000	41088000	18288000	12621000	7379800	5241300	46754000	33708000	13046000	0	0	0	0	0	0	5833	363	5509	36384;36385	49781;49782	49781			2	
AVLQWTK	1	Unmodified	844.48069	0.48068833	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	40.704	39.819	2	0.0028298	34742	160511_QHF_FH_JSI11i_3	113.7	76.138			0.84776	1.1169	19.015	8	0	Linear	0.98594	0.81541	4.9909	2	0	Median	0.731	0.87689	12.56	2	0	Median	0.82382	0.79535	1.5371	2	0	Median	0.74355	0.79927	47.157	2	0	Median	1918200000	972620000	945590000	298950000	144900000	154040000	397120000	216850000	180280000	406020000	184900000	221120000	816130000	425980000	390150000	5834	4109	5510	36386;36387;36388;36389;36390;36391;36392;36393	49783;49784;49785;49786;49787;49788;49789;49790;49791;49792;49793	49783			11	
AVLSAEQLRDEEVHAGLGELLR	0	Unmodified	2404.271	0.27103649	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							3	6	2	1	83.888	83.046	3;4	1.417E-18	73121	160511_QHF_FH_JSI9i_2	151.82	134.22			0.9345	1.0333	12.735	11	1	Median	1.0864	0.92123	8.1187	3	0	Median	0.81868	1.0038	14.118	6	1	Median	1.1264	1.1227	5.1399	2	0	Median	NaN	NaN	NaN	0	0	Median	2432600000	1212900000	1219600000	583380000	278880000	304500000	1187700000	641870000	545870000	661460000	292190000	369280000	0	0	0	5835	1706	5511	36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405	49794;49795;49796;49797;49798;49799;49800;49801;49802;49803;49804;49805;49806;49807;49808;49809;49810;49811;49812	49806			19	
AVLTFALDSVER	0	Unmodified	1319.7085	0.70851601	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	79.115	78.987	2	0.018186	68653	160511_QHF_FH_JSI12i_3	75.387	54.517			1.0191	1.0117	9.9853	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99286	0.94277	NaN	1	0	Median	1.0461	1.0858	NaN	1	0	Median	68168000	33843000	34325000	0	0	0	0	0	0	29435000	16138000	13297000	38733000	17705000	21028000	5836	4927	5512	36406;36407	49813	49813			0	
AVLTILLAHK	1	Unmodified	1077.691	0.69101545	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	3	2	2	69.169	65.059	2;3	6.2039E-07	35622	160513_QHF_FH_JSI10Kac_6	118.18	66.91			1.1075	0.99187	14.091	10	0	Median	1.2163	1.0188	3.8617	3	0	Plateau	0.72895	0.86705	26.698	3	0	Plateau	1.1075	1.0438	5.4364	2	0	Median	0.96235	0.98925	15.551	2	0	Median	1712700000	916260000	796440000	314060000	150420000	163640000	822560000	474640000	347920000	290570000	129580000	160990000	285520000	161620000	123890000	5837	3356	5513	36408;36409;36410;36411;36412;36413;36414;36415;36416;36417	49814;49815;49816;49817;49818;49819;49820;49821;49822;49823;49824;49825;49826;49827;49828;49829;49830;49831;49832;49833	49832			20	
AVLTPNHVEFSR	0	Unmodified	1368.715	0.71499837	3414	Q8IW45	CARKD	ATP-dependent (S)-NAD(P)H-hydrate dehydratase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	40.628	39.815	3	0.00034857	34913	160511_QHF_FH_JSI11i_3	52.265	44.895			0.97834	0.96268	32.633	4	0	Median	1.8791	1.5325	NaN	1	0	Median	0.60189	0.69433	NaN	1	0	Median	1.0501	0.98736	NaN	1	0	Median	0.91144	0.93861	NaN	1	0	Median	285310000	144450000	140860000	56244000	18982000	37261000	58794000	35652000	23143000	105570000	55134000	50432000	64702000	34678000	30024000	5838	3414	5514	36418;36419;36420;36421	49834	49834			1	
AVLVAGLYDNVGK	1	Unmodified	1317.7293	0.72925145	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.7	6.13		1						2			1	1	1	70.981	64.983	2	6.6399E-06	34313	160513_QHF_FH_JSI11Kac_5	107.24	72.02			1.5197	1.5687	43.859	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1641	1.1504	NaN	1	1	Median	1.984	2.1391	NaN	1	1	Median	50273000	17329000	32944000	0	0	0	0	0	0	7484700	2855500	4629200	42788000	14473000	28315000	5839	3267	5515	36422;36423;36424	49835;49836;49837	49836			3	
AVLVALK	1	Unmodified	712.48471	0.48471107	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.59	4	4	4				3	5	4	5	7	6	6	47.465	42.007	2	0.0012098	21558	160513_QHF_FH_JSI10Kac_5	109.88	37.885			0.9073	0.99255	41.529	22	7	Median	0.91313	0.79105	77.887	5	3	Median	0.65014	0.77239	26.509	6	2	Linear	1.0447	1.0209	32.445	6	0	Median	0.8799	0.95721	25.429	5	2	Median	2846700000	1486800000	1359900000	546350000	252810000	293550000	621480000	348990000	272500000	908070000	486870000	421200000	770810000	398140000	372670000	5840	1283	5516	36425;36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441;36442;36443;36444;36445;36446;36447;36448	49838;49839;49840;49841;49842;49843;49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860;49861;49862;49863;49864;49865;49866;49867;49868;49869;49870;49871;49872;49873;49874	49867			37	
AVLVDLEPGTMDSVR	0	Unmodified	1600.8131	0.81305744	2075;811;2824	P68371;Q3ZCM7;P04350	TUBB4B;TUBB8;TUBB4A	Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.774	8	8	5							6	5	5	5	74.492	73.754	2;3	6.9957E-40	63703	160511_QHF_FH_JSI12i_2	239.02	232.58			1.0341	1.0287	12.204	21	2	Median	1.19	0.97634	10.856	6	2	Median	0.90414	1.0588	8.7324	5	0	Median	1.0699	1.049	9.1967	5	0	Median	0.93418	0.99102	19.38	5	0	Median	11683000000	5903200000	5780100000	2036400000	937480000	1098900000	2772700000	1469600000	1303200000	3540700000	1749500000	1791200000	3333400000	1746600000	1586900000	5841	2075;2824;811	5517	36449;36450;36451;36452;36453;36454;36455;36456;36457;36458;36459;36460;36461;36462;36463;36464;36465;36466;36467;36468;36469	49875;49876;49877;49878;49879;49880;49881;49882;49883;49884;49885;49886;49887;49888;49889;49890;49891;49892;49893;49894;49895;49896;49897;49898;49899;49900;49901;49902;49903;49904;49905;49906;49907;49908;49909;49910;49911;49912;49913;49914	49883			40	
AVLVDLEPGTMDSVR	0	Oxidation (M)	1616.808	0.80797206	2075;811;2824	P68371;Q3ZCM7;P04350	TUBB4B;TUBB8;TUBB4A	Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.87	8	4	1			2	2	2		6	7	2	4	65.64	62.525	2;3	2.6856E-16	33113	160513_QHF_FH_JSI10Kac_4	138.71	124.29			1.0198	1.0689	10.766	16	6	Median	1.3051	1.0861	6.2047	5	2	Median	0.88573	1.0673	11.195	5	2	Median	1.0178	1.0215	9.123	2	0	Median	0.94142	0.99901	16.371	4	2	Median	1410500000	689340000	721110000	219570000	94661000	124900000	579110000	288500000	290610000	287000000	142260000	144740000	324780000	163920000	160860000	5842	2075;2824;811	5517	36470;36471;36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483;36484;36485;36486;36487;36488	49915;49916;49917;49918;49919;49920;49921;49922;49923;49924;49925;49926;49927;49928;49929;49930;49931;49932;49933;49934;49935;49936;49937;49938;49939	49922		323	25	
AVLVQFSNGK	1	Unmodified	1061.5869	0.58694431	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.07			4					4	1	1	3	4	1	49.406	43.214	2	0.00025459	36584	160511_QHF_FH_JSI12i_3	80.219	63.443			0.91696	0.94614	32.195	7	3	Median	0.91696	0.76518	NaN	1	0	Median	0.73755	0.85469	29.246	2	2	Median	1.0863	1.0676	42.548	3	1	Median	0.96021	0.94614	NaN	1	0	Median	97120000	48077000	49044000	2844900	1675800	1169000	17100000	11012000	6087100	33814000	11270000	22544000	43362000	24119000	19243000	5843	4604	5518	36489;36490;36491;36492;36493;36494;36495;36496;36497	49940;49941;49942;49943;49944;49945;49946;49947;49948;49949;49950;49951;49952	49951			13	
AVLWQDSFSPHLK	1	Unmodified	1526.7882	0.78816332	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	69.695	68.884	3	1.1915E-05	59502	160511_QHF_FH_JSI12i_3	115.92	104.45			0.9461	1.032	31.204	4	2	Linear	2.6001	2.1628	NaN	1	1	Median	1.3135	1.5461	NaN	1	0	Median	1.0612	1.034	NaN	1	0	Median	1.2797	1.2893	NaN	1	1	Median	172950000	78126000	94822000	13122000	2601600	10521000	15159000	5591400	9567800	62796000	28524000	34272000	81870000	41410000	40461000	5844	2555	5519	36498;36499;36500;36501	49953;49954;49955	49955			3	
AVMATHGVK	1	Unmodified	912.48512	0.48512178	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	8.8839	8.9327	2	0.0029143	6305	160511_QHF_FH_JSI12i_3	61.962	32.813			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5845	207	5520	36502;36503	49956;49957	49957			2	
AVMDHVSDSFLETNVPLLVLIEAAK	1	Unmodified	2710.4252	0.42515387	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	102.9	102.84	3	2.2836E-24	89529	160511_QHF_FH_JSI12i_3	142.42	140.17			0.7975	0.84195	12.971	6	2	Median	0.80251	0.66577	NaN	1	0	Median	0.73354	0.88768	10.066	2	2	Median	0.90116	0.85849	NaN	1	0	Median	0.73314	0.78872	11.822	2	0	Median	374820000	196310000	178510000	34815000	17761000	17054000	111190000	63637000	47558000	56143000	32794000	23349000	172670000	82121000	90546000	5846	1421	5521	36504;36505;36506;36507;36508;36509	49958;49959;49960;49961;49962;49963;49964;49965	49964			8	
AVMDHVSDSFLETNVPLLVLIEAAK	1	Oxidation (M)	2726.4201	0.42006849	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	102.51	102.52	3	2.051E-12	89295	160511_QHF_FH_JSI12i_3	110.94	103.41			1.2032	1.212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2032	1.212	NaN	1	1	Median	83153000	33383000	49770000	0	0	0	0	0	0	0	0	0	83153000	33383000	49770000	5847	1421	5521	36510	49966	49966		1079	1	
AVMEIMTK	1	Unmodified	921.46636	0.46636017	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	41.375	40.439	2	0.0019657	34725	160511_QHF_FH_JSI11i_2	81.296	57.341			1.1176	0.99505	15.739	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.80734	0.99505	NaN	1	1	Median	0.90632	0.92511	NaN	1	1	Median	1.1176	1.2508	NaN	1	0	Median	239630000	141530000	98106000	0	0	0	71526000	43604000	27922000	97745000	59052000	38693000	70361000	38870000	31491000	5848	4332	5522	36511;36512;36513;36514;36515	49967;49968;49969;49970;49971	49969			5	
AVMEQANLQR	0	Unmodified	1158.5815	0.58154136	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	24.66	23.79	2	1.2297E-10	19883	160511_QHF_FH_JSI11i_2	141.2	128.21			0.77685	0.77142	53.882	3	2	Median	0.90677	0.79537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77685	0.77142	NaN	1	0	Median	0.28243	0.30816	NaN	1	1	Median	103920000	56930000	46989000	18246000	9121300	9124700	0	0	0	46485000	22767000	23718000	39188000	25043000	14145000	5849	723	5523	36516;36517;36518	49972;49973;49974;49975;49976	49976			5	
AVMEQIPEIQK	1	Unmodified	1284.6748	0.67477304	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	54.31	53.56	2	5.5238E-06	47490	160511_QHF_FH_JSI9i_1	114.97	86.57			1.1256	1.0179	12.063	3	2	Median	1.2192	1.0179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1256	1.1052	NaN	1	0	Median	0.86131	0.87151	NaN	1	1	Median	511410000	255290000	256120000	144670000	62291000	82379000	0	0	0	184130000	83734000	100390000	182620000	109270000	73349000	5850	4831	5524	36519;36520;36521;36522	49977;49978;49979;49980	49980			4	
AVMESINPHK	1	Unmodified	1124.5648	0.56482866	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	1	3	21.442	20.824	2;3	3.5235E-18	17525	160511_QHF_FH_JSI11i_3	153.08	114.94			0.96747	0.99217	29.058	4	2	Median	1.2847	1.0704	NaN	1	0	Median	0.78568	0.91969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84996	0.87121	47.423	2	2	Median	360520000	167430000	193090000	13406000	6546000	6860400	27299000	15149000	12150000	0	0	0	319820000	145740000	174080000	5851	648	5525	36523;36524;36525;36526;36527;36528	49981;49982;49983;49984;49985	49981			5	
AVMFPMSTMK	1	Unmodified	1141.5334	0.53339388	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.34	64.05	2	0.015008	55261	160511_QHF_FH_JSI12i_3	51.949	37.953			1.331	1.3316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.331	1.3316	NaN	1	1	Median	42237000	9899000	32338000	0	0	0	0	0	0	0	0	0	42237000	9899000	32338000	5852	3419	5526	36529	49986	49986			1	
AVMGIFSLVTGK	1	Unmodified	1221.6791	0.67913014	3049	Q6IA69	NADSYN1	Glutamine-dependent NAD(+) synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	3	1	1	95.975	93.505	2	1.6527E-09	47182	160513_QHF_FH_JSI10Kac_6	120.09	94.152			1.0129	0.93393	54.644	6	3	Median	0.65121	0.54608	83.835	2	1	Median	0.91989	1.082	35.169	2	1	Median	1.3615	1.2635	NaN	1	1	Median	0.87433	0.88291	NaN	1	0	Median	281100000	194890000	86208000	191870000	157630000	34242000	47050000	20089000	26961000	15919000	7035100	8883900	26264000	10142000	16122000	5853	3049	5527	36530;36531;36532;36533;36534;36535;36536	49987;49988;49989;49990;49991;49992;49993;49994	49994			8	
AVMHFESFITEK	1	Unmodified	1437.6962	0.69623677	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.384	64.093	3	0.010885	55324	160511_QHF_FH_JSI12i_3	39.424	24.548			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5854	2434	5528	36537	49995	49995			1	
AVMHFLVNHVK	1	Unmodified	1293.7016	0.70159692	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.17			23						12	14	12	5	4	46.499	41.887	2;3;4	6.1356E-59	21936	160513_QHF_FH_JSI10Kac_6	179.51	157.46			0.96175	0.92802	50.803	29	7	Median	1.1619	0.96118	61.786	12	4	Median	0.79933	0.91609	62.852	8	2	Median	0.98423	0.92802	22.221	5	1	Median	0.89224	0.92748	9.2714	4	0	Median	2803400000	1262900000	1540500000	847050000	352290000	494760000	774300000	350680000	423610000	799500000	355660000	443840000	382550000	204270000	178270000	5855	133	5529	36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556;36557;36558;36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572	49996;49997;49998;49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010;50011;50012;50013;50014;50015;50016;50017;50018;50019;50020;50021;50022;50023;50024;50025;50026;50027;50028;50029;50030;50031;50032;50033;50034;50035;50036;50037;50038;50039;50040;50041;50042;50043;50044;50045;50046;50047;50048;50049;50050;50051;50052	50046			56	
AVMHFLVNHVK	1	Oxidation (M)	1309.6965	0.69651154	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	35.934	26.931	2;3;4	1.0668E-11	14848	160513_QHF_FH_JSI9Kac_6	134.59	113.36			1.2848	1.2544	11.782	9	0	Median	1.3105	1.1359	2.6538	3	0	Plateau	1.0461	1.2631	6.8923	2	0	Median	1.5473	1.5144	6.6489	2	0	Median	1.1732	1.2898	3.9434	2	0	Median	178730000	83223000	95508000	80449000	33888000	46560000	48476000	24952000	23524000	27448000	13672000	13776000	22358000	10710000	11648000	5856	133	5529	36573;36574;36575;36576;36577;36578;36579;36580;36581	50053;50054;50055;50056;50057;50058;50059;50060;50061	50054		60	7	
AVMISAIEK	1	Unmodified	960.5314	0.53140327	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.75	5.93	2	1						1			1	3		47.657	44.623	2	0.012208	24798	160513_QHF_FH_JSI11Kac_5	66.692	36.438			1.0828	1.1717	38.564	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0314	1.2284	NaN	1	0	Median	1.1369	1.1176	47.159	3	1	Median	NaN	NaN	NaN	0	0	Median	628320000	252330000	375990000	0	0	0	182260000	85098000	97162000	446060000	167240000	278830000	0	0	0	5857	2665	5530	36582;36583;36584;36585	50062;50063	50063			1	
AVMLLHTHTITSR	0	Unmodified	1478.8028	0.80276752	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	1	3	3	2	44.539	35.426	2;3;4	1.8815E-20	19528	160513_QHF_FH_JSI10Kac_6	150.14	127.91			1.0921	1.1947	24.996	7	0	Median	1.4147	1.2097	NaN	1	0	Median	0.75492	0.90546	26.357	3	0	Median	0.78605	0.76839	NaN	1	0	Median	1.21	1.3246	14.599	2	0	Median	344760000	148490000	196270000	71144000	18627000	52517000	220770000	104110000	116660000	32702000	17172000	15530000	20149000	8583700	11565000	5858	3860	5531	36586;36587;36588;36589;36590;36591;36592;36593;36594	50064;50065;50066;50067;50068;50069;50070;50071;50072;50073;50074;50075;50076	50073			12	
AVMLLHTHTITSR	0	Oxidation (M)	1494.7977	0.79768214	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By matching	By MS/MS	By matching		16	0									4	1	2	1		38.792	29.85	3;4	3.204E-05	16629	160513_QHF_FH_JSI10Kac_6	88.803	75.666			0.78068	0.85534	25.946	4	0	Median	1.571	1.3485	NaN	1	0	Median	0.71003	0.84464	13.383	2	0	Median	0.78316	0.78796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57187000	29079000	28108000	24267000	11515000	12753000	25698000	13575000	12122000	7221900	3989000	3232900	0	0	0	5859	3860	5531	36595;36596;36597;36598	50077;50078	50078		2308	2	
AVMLPGAR	0	Unmodified	813.45309	0.45309337	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.67	0.471		1	2							1	1		1	32.103	31.592	2	0.0025079	25827	160511_QHF_FH_JSI9i_3	77.748	29.507			0.88161	0.98825	14.214	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73446	0.89374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0582	1.0927	NaN	1	0	Median	269580000	131060000	138520000	0	0	0	84804000	51881000	32922000	0	0	0	184770000	79179000	105590000	5860	4628	5532	36599;36600;36601	50079;50080	50079			2	
AVMSGIHPAEDTEGTEFEPEGLPEVVK	1	Unmodified	2867.3535	0.35350507	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.996	78.996	3	9.7378E-05	70560	160511_QHF_FH_JSI11i_3	48.773	41.413			1.1621	1.1035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1621	1.1035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11305000	4575400	6730000	0	0	0	0	0	0	11305000	4575400	6730000	0	0	0	5861	1660	5533	36602	50081	50081			1	
AVMSNLSAHGVK	1	Unmodified	1212.6285	0.62849155	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	4.89		1	9						2	3	3	3	3	25.775	24.4	2;3	1.4456E-32	19662	160511_QHF_FH_JSI9i_3	173.72	161.45			1.0202	0.82756	64.332	11	2	Median	1.4376	1.1317	22.017	3	0	Median	1.1849	1.3311	58.227	3	0	Plateau	0.6222	0.57825	5.0708	2	2	Median	0.46345	0.46888	120.13	3	0	Median	2958600000	1412100000	1546600000	638000000	260380000	377620000	565280000	306890000	258400000	479090000	268250000	210840000	1276300000	576550000	699710000	5862	3860	5534	36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614	50082;50083;50084;50085;50086;50087;50088;50089;50090;50091;50092;50093;50094;50095;50096;50097;50098;50099;50100	50092			18	
AVMSNLSAHGVK	1	Oxidation (M)	1228.6234	0.62340617	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							3	1	1	1	17.885	17.053	2;3	0.00019558	20514	160511_QHF_FH_JSI11i_3	85.533	59.428			1.3514	1.2681	110.01	4	2	Median	3.3348	2.7781	96.891	2	1	Median	0.3229	0.37747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1175	1.1484	NaN	1	0	Median	187030000	73945000	113090000	44216000	8117900	36098000	9839400	6716900	3122500	0	0	0	132980000	59111000	73866000	5863	3860	5534	36615;36616;36617;36618;36619;36620	50101;50102;50103;50104;50105;50106	50101		2309	6	
AVMTSIK	1	Unmodified	748.41531	0.41531088	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		20.289	19.81	2	0.009353	17009	160511_QHF_FH_JSI10i_2	83.614	39.003			1.7669	1.791	30.738	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.83474	1.0269	NaN	1	1	Median	1.3698	1.3922	35.672	2	2	Median	NaN	NaN	NaN	0	0	Median	925990000	459820000	466170000	0	0	0	276820000	155780000	121040000	649170000	304040000	345130000	0	0	0	5864	1520	5535	36621;36622;36623	50107;50108;50109	50109			3	
AVMVSNILLINK	1	Unmodified	1313.7741	0.77409316	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	82.408	78.996	2;3	7.7991E-62	41651	160513_QHF_FH_JSI10Kac_6	223.08	194.68			0.92207	0.94051	15.327	13	0	Median	1.0379	0.87606	12.927	3	0	Median	0.73677	0.86312	11.871	4	0	Median	1.0924	1.005	12.393	3	0	Plateau	1.2001	1.2315	7.8801	3	0	Plateau	2804400000	1578600000	1225700000	736720000	475910000	260810000	1013600000	611330000	402270000	518180000	242670000	275510000	535850000	248740000	287120000	5865	5536	5536	36624;36625;36626;36627;36628;36629;36630;36631;36632;36633;36634;36635;36636	50110;50111;50112;50113;50114;50115;50116;50117;50118;50119;50120;50121;50122;50123;50124;50125;50126;50127;50128;50129	50127			19	
AVMVSNILLINK	1	Oxidation (M)	1329.769	0.76900778	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	1	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	74.687	74.397	2	3.1725E-06	37811	160513_QHF_FH_JSI9Kac_6	112.83	94.522			1.0874	1.0847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0874	1.0847	NaN	1	0	Median	61454000	30945000	30509000	0	0	0	0	0	0	0	0	0	61454000	30945000	30509000	5866	5536	5536	36637;36638	50130;50131	50130		2691	2	
AVMYLYK	1	Unmodified	886.46226	0.46226107	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.8	0.433								1	3	2	1	1		53.223	43.688	2	0.0066928	23598	160513_QHF_FH_JSI11Kac_6	91.093	62.565			1.0041	0.9926	27.145	4	1	Median	1.0463	0.8887	33.125	2	1	Median	1.1048	1.3004	NaN	1	0	Median	0.91265	0.87714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83161000	39506000	43655000	29263000	11652000	17611000	23632000	12526000	11106000	30265000	15327000	14938000	0	0	0	5867	4246	5537	36639;36640;36641;36642	50132;50133;50134	50132			3	
AVNAMILAGK	1	Unmodified	986.55829	0.55828672	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	49.008	48.049	2	5.9894E-05	41173	160511_QHF_FH_JSI12i_2	103.56	65.325			0.50577	0.53526	49.783	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36692	0.37643	NaN	1	1	Median	0.69715	0.7611	NaN	1	1	Median	221870000	168710000	53165000	0	0	0	0	0	0	160730000	127270000	33459000	61148000	41442000	19706000	5868	5310	5538	36643;36644	50135;50136	50135			2	
AVNDGLFNQYISQQEYKPR	1	Unmodified	2269.1127	0.11274493	5392	Q9UL63	MKLN1	Muskelin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			69.086	67.614	3	5.74E-11	56564	160511_QHF_FH_JSI10i_3	129.62	96.31			0.70941	0.83555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70941	0.83555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26689000	18519000	8170400	0	0	0	26689000	18519000	8170400	0	0	0	0	0	0	5869	5392	5539	36645	50137	50137			1	
AVNDVNGLK	1	Unmodified	928.49779	0.49779495	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	22.246	19.35	2	2.8574E-06	16978	160511_QHF_FH_JSI12i_1	124.98	68.473			0.9521	1.0321	24.346	6	1	Median	1.3376	1.078	NaN	1	0	Median	0.68397	0.79242	44.88	2	1	Median	1.0149	0.98496	8.4853	2	0	Median	0.96581	1.0185	NaN	1	0	Median	862950000	376920000	486030000	176590000	81340000	95247000	231270000	106010000	125260000	235290000	86050000	149240000	219800000	103520000	116280000	5870	4322	5540	36646;36647;36648;36649;36650;36651	50138;50139;50140;50141	50139			4	
AVNLFPAGTNSR	0	Unmodified	1245.6466	0.64658446	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		48.88	47.832	2	6.4372E-05	41914	160511_QHF_FH_JSI9i_2	96.342	75.44			3.2982	3.2873	81.071	3	0	Median	5.9388	5.1062	NaN	1	0	Median	0.9204	1.0606	NaN	1	0	Median	3.2982	3.2873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132940000	43226000	89709000	43878000	10660000	33218000	36900000	20016000	16884000	52157000	12550000	39607000	0	0	0	5871	4282	5541	36652;36653;36654;36655	50142;50143;50144;50145;50146	50146			5	
AVNNSNYGWR	0	Unmodified	1179.5421	0.54211939	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			25.716	24.441	2	0.0029726	20214	160511_QHF_FH_JSI10i_3	71.379	58.753			0.81312	0.90324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81312	0.90324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20364000	10373000	9990800	0	0	0	20364000	10373000	9990800	0	0	0	0	0	0	5872	4076	5542	36656	50147	50147			1	
AVNPFLADVDK	1	Unmodified	1187.6186	0.61863837	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	62.928	62.013	2	0.0014585	53823	160511_QHF_FH_JSI11i_2	76.143	53.362			0.2128	0.22656	1.3189	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22619	0.22869	NaN	1	1	Median	0.20019	0.22446	NaN	1	1	Median	228860000	199820000	29038000	0	0	0	0	0	0	111870000	92779000	19090000	116990000	107040000	9948600	5873	2485	5543	36657;36658;36659	50148;50149;50150	50149			3	
AVNQDKK	2	Acetyl (K)	843.44503	0.4450311	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		6.002	-1.323	2	0.0094623	2131	160513_QHF_FH_JSI11Kac_3	110.81	56.271			0.7267	0.78699	147.8	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8923	2.238	NaN	1	0	Median	0.27908	0.27674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66224000	42920000	23304000	0	0	0	11077000	3970800	7105900	55148000	38950000	16198000	0	0	0	5874	1103	5544	36660;36661	50151;50152	50151	954		2	
AVNSATGVPTV	0	Unmodified	1014.5346	0.53457439	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	45.553	43.147	2	7.4135E-06	38396	160511_QHF_FH_JSI9i_1	109.71	83.775			0.87635	0.95715	6.9371	5	0	Median	1.2498	1.0126	NaN	1	0	Median	0.81657	0.96459	NaN	1	0	Median	0.9162	0.89744	9.1096	2	0	Median	0.87635	0.91929	NaN	1	0	Median	1842000000	900580000	941420000	413290000	149540000	263750000	510240000	302170000	208070000	466080000	260520000	205560000	452380000	188350000	264040000	5875	1009;4688	5545	36662;36663;36664;36665;36666	50153;50154;50155;50156;50157;50158	50156			6	
AVNTAQGLFQR	0	Unmodified	1203.636	0.63601977	370	O43752	STX6	Syntaxin-6	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	41.54	40.654	2	0.00050616	33173	160511_QHF_FH_JSI9i_3	85.862	68.426			0.4781	0.42972	71.784	2	2	Median	0.30922	0.25867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73921	0.71389	NaN	1	1	Median	147180000	111520000	35667000	102810000	80490000	22322000	0	0	0	0	0	0	44372000	31027000	13346000	5876	370	5546	36667;36668	50159;50160	50159			2	
AVNTLNEALEFAK	1	Unmodified	1418.7405	0.74054442	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.71	6	6	2				2	3		4	6	6	3	75.12	71.538	2;3	1.023E-99	64326	160511_QHF_FH_JSI9i_2	265.6	230.88			0.81368	0.83921	19.887	17	5	Median	0.96901	0.80216	17.865	4	1	Median	0.73651	0.86223	18.99	5	2	Median	0.81649	0.84408	24.627	5	2	Median	0.71414	0.78751	26.081	3	0	Median	4679500000	2433100000	2246300000	922990000	466130000	456850000	1422300000	820610000	601690000	1332500000	692270000	640250000	1001700000	454120000	547560000	5877	1372	5547	36669;36670;36671;36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686;36687	50161;50162;50163;50164;50165;50166;50167;50168;50169;50170;50171;50172;50173;50174;50175;50176;50177;50178;50179;50180;50181;50182;50183;50184;50185;50186;50187;50188;50189;50190;50191;50192;50193;50194;50195	50186			35	
AVNTQALSGAGILR	0	Unmodified	1369.7678	0.76776223	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.87	3	3	4					2		2	2	5	3	61.409	58.413	2	1.068E-21	48921	160511_QHF_FH_JSI10i_3	179.19	131.59			0.93613	0.93926	44.979	9	8	Median	1.3427	1.1274	40.194	2	2	Median	0.92909	1.1248	NaN	1	0	Median	0.82348	0.82557	52.358	5	5	Median	0.96174	0.98862	NaN	1	1	Median	1044400000	547300000	497150000	185610000	97863000	87749000	85238000	42014000	43224000	466620000	243200000	223420000	306980000	164220000	142760000	5878	444	5548	36688;36689;36690;36691;36692;36693;36694;36695;36696;36697;36698;36699	50196;50197;50198;50199;50200;50201;50202;50203;50204;50205;50206;50207;50208	50200			13	
AVNVYSTSVTSDNLSR	0	Acetyl (Protein N-term)	1753.8483	0.84825697	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	2	1	2	67.104	63.554	2	2.7544E-10	58121	160511_QHF_FH_JSI12i_1	184.1	168.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5879	2698	5549	36700;36701;36702;36703;36704;36705	50209;50210;50211;50212;50213;50214;50215;50216;50217;50218	50212			10	
AVNYFSK	1	Unmodified	827.41775	0.41775372	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.79	4	4	2				1	4	4	4	5	4	6	30.466	25.691	2	0.0086222	21524	160511_QHF_FH_JSI11i_2	82.671	34.498			0.96908	0.97552	37.142	19	5	Median	1.1906	1.0186	53.765	4	1	Median	0.98336	1.1284	32.306	5	0	Median	0.97619	0.99506	32.38	4	1	Median	0.75287	0.82513	33.218	6	3	Median	4463600000	2282400000	2181100000	834400000	343500000	490900000	1109500000	574200000	535280000	1337100000	745640000	591420000	1182600000	619110000	563520000	5880	2155	5550	36706;36707;36708;36709;36710;36711;36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722;36723;36724	50219;50220;50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237;50238	50230			20	
AVNYFSKVK	2	Acetyl (K)	1096.5917	0.59169534	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.793							3	4	4	2	3	3	3	59.068	48.882	2	0.00057591	24729	160513_QHF_FH_JSI10Kac_5	98.033	73.11			0.68761	0.74689	41.655	9	0	Median	NaN	NaN	NaN	0	0	Median	0.94118	1.1265	7.979	3	0	Plateau	0.4392	0.4329	14.365	3	0	Median	0.68761	0.74689	13.119	3	0	Median	238940000	155330000	83607000	6036800	6036800	0	60065000	33924000	26141000	126100000	87664000	38434000	46735000	27703000	19033000	5881	2155	5551	36725;36726;36727;36728;36729;36730;36731;36732;36733;36734;36735	50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249;50250;50251;50252;50253	50249	2259		15	
AVPAALILR	0	Acetyl (Protein N-term)	964.60695	0.60695147	5724	Q9Y6G5	COMMD10	COMM domain-containing protein 10	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	93.471	93.045	2	0.0012957	82642	160511_QHF_FH_JSI9i_1	66.682	46.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5882	5724	5552	36736;36737;36738;36739;36740	50254;50255;50256;50257;50258	50256			5	
AVPAEGVR	0	Unmodified	797.43955	0.43955179	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.433	13.465	2	0.011142	10789	160511_QHF_FH_JSI9i_1	54.157	14.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5883	2466	5553	36741	50259	50259			1	
AVPEGFGR	0	Unmodified	831.4239	0.42390173	5302	Q9UHI8	ADAMTS1	A disintegrin and metalloproteinase with thrombospondin motifs 1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				75.349	74.443	2	0.025585	63894	160511_QHF_FH_JSI9i_1	52.683	28.711			0.0033857	0.00279	NaN	1	1	Median	0.0033857	0.00279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	887630000	886130000	1505900	887630000	886130000	1505900	0	0	0	0	0	0	0	0	0	5884	5302	5554	36742;36743	50260;50261	50260			2	
AVPEGFVIPR	0	Unmodified	1083.6077	0.60767975	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.33	3	4	1					2		1	2	4	3	64.878	62.232	2	7.2062E-05	54696	160511_QHF_FH_JSI9i_2	88.819	59.67			0.89545	0.93525	12.245	10	0	Median	1.0988	0.93553	NaN	1	0	Median	0.77691	0.93912	1.7124	2	0	Median	0.97854	0.95018	13.93	4	0	Median	0.84262	0.92283	19.456	3	0	Median	1092700000	597200000	495460000	170050000	77131000	92917000	237560000	133510000	104040000	461810000	256800000	205020000	223250000	129760000	93482000	5885	1566	5555	36744;36745;36746;36747;36748;36749;36750;36751;36752;36753	50262;50263;50264;50265;50266;50267;50268;50269;50270;50271;50272;50273;50274	50268			13	
AVPEHAAR	0	Unmodified	849.4457	0.4456998	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.5152	5.6107	2	0.009826	3150	160511_QHF_FH_JSI12i_3	55.676	17.474			0.97316	0.99072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97316	0.99072	NaN	1	0	Median	178660000	90342000	88322000	0	0	0	0	0	0	0	0	0	178660000	90342000	88322000	5886	586	5556	36754	50275;50276	50275			2	
AVPETEDVQASVSDTAQQPSEEQSK	1	Unmodified	2659.2097	0.2096776	3043	Q6FIF0	ZFAND6	AN1-type zinc finger protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.588	45.911	3	1.1262E-21	41301	160511_QHF_FH_JSI10i_1	135.3	131.32			0.80647	0.8159	29.803	4	0	Median	0.71197	0.57897	NaN	1	0	Median	0.67187	0.78326	NaN	1	0	Median	0.91352	0.8499	NaN	1	0	Median	1.1319	1.1953	NaN	1	0	Median	275710000	141660000	134050000	61252000	29602000	31649000	97568000	61396000	36172000	67869000	30248000	37621000	49020000	20415000	28605000	5887	3043	5557	36755;36756;36757;36758	50277;50278;50279;50280;50281;50282;50283;50284;50285	50283			9	
AVPETRPNHTIYINNLNEK	1	Acetyl (Protein N-term)	2264.1549	0.1549441	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.16	6.34	1	6	5					4	3	2	6	6	5	56.178	52.03	2;3	9.9753E-14	46162	160511_QHF_FH_JSI11i_3	100.53	83.911			0.99716	1.034	13.305	17	0	Median	1.0675	0.91011	2.7894	2	0	Median	0.8227	0.9839	16.133	6	0	Median	1.1449	1.1216	7.9523	6	0	Median	0.99716	1.034	4.2801	3	0	Plateau	4711200000	2303500000	2407800000	832090000	411430000	420660000	1202700000	647770000	554930000	1852200000	859010000	993170000	824260000	385260000	439000000	5888	920	5558	36759;36760;36761;36762;36763;36764;36765;36766;36767;36768;36769;36770;36771;36772;36773;36774;36775;36776;36777	50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297;50298;50299;50300;50301;50302;50303;50304;50305;50306;50307;50308;50309;50310;50311;50312;50313;50314;50315;50316;50317;50318;50319	50287			34	
AVPFNAPK	1	Unmodified	842.46504	0.46503826	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	0	By MS/MS				1.5	0.5	1	1								2				32.575	31.533	2	0.0032937	27814	160511_QHF_FH_JSI9i_1	73.039	30.039			1.7261	1.4723	NaN	1	0	Median	1.7261	1.4723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156310000	64009000	92296000	156310000	64009000	92296000	0	0	0	0	0	0	0	0	0	5889	4014	5559	36778;36779	50320;50321	50320			2	
AVPGGAGDASVLPSLPR	0	Unmodified	1562.8417	0.84165545	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2									2	3	2	67.932	67.494	2;3	9.1907E-05	59188	160511_QHF_FH_JSI11i_2	80.96	63.934			0.63551	0.68089	110.73	6	5	Median	NaN	NaN	NaN	0	0	Median	0.63551	0.73432	82.043	2	2	Median	1.1827	1.1277	105.34	3	2	Median	0.10572	0.10728	NaN	1	1	Median	574450000	444260000	130190000	0	0	0	145250000	103350000	41895000	251520000	181390000	70135000	177680000	159520000	18160000	5890	4262	5560	36780;36781;36782;36783;36784;36785;36786	50322;50323;50324;50325;50326;50327;50328	50328			7	
AVPGNVAK	1	Unmodified	754.43374	0.43373813	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.849	12.435	2	0.019842	10357	160511_QHF_FH_JSI12i_1	46.37	0.019408			0.55778	0.59424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55778	0.59424	NaN	1	0	Median	654750000	436750000	218000000	0	0	0	0	0	0	0	0	0	654750000	436750000	218000000	5891	1685	5561	36787	50329	50329			1	
AVPKPDLDSYVFLR	1	Unmodified	1618.8719	0.87189295	4386	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			3									2	1	77.339	77.25	2;3	0.00041331	68993	160511_QHF_FH_JSI11i_3	78.069	67.435			0.90773	0.85922	16.642	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95465	0.88723	4.5377	2	1	Median	0.66459	0.66866	NaN	1	0	Median	142560000	72020000	70537000	0	0	0	0	0	0	109370000	51088000	58278000	33191000	20932000	12259000	5892	4386	5562	36788;36789;36790	50330;50331	50331			2	
AVPLAGFGYGLPISR	0	Unmodified	1516.8402	0.84019889	2630	Q15118	PDK1	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							3	1	1	1	92.483	91.96	2	9.9885E-05	79763	160511_QHF_FH_JSI12i_3	104.87	88.613			0.81384	0.86066	16.751	4	1	Median	1.2153	1.0451	NaN	1	0	Median	0.78836	0.95803	NaN	1	0	Median	0.84014	0.77318	NaN	1	1	Median	0.74788	0.73742	NaN	1	0	Median	67618000	36044000	31575000	6582500	2844400	3738100	6103300	3259700	2843600	27820000	19093000	8727400	27112000	10847000	16265000	5893	2630	5563	36791;36792;36793;36794;36795;36796	50332;50333;50334;50335;50336;50337;50338	50337			7	
AVPLALALISVSNPR	0	Unmodified	1519.9086	0.9086128	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	4	3	96.295	91.81	2;3	1.5939E-32	48554	160513_QHF_FH_JSI10Kac_6	166.14	129.46			1.0125	0.97278	13.464	15	1	Median	1.1402	0.9528	11.631	4	0	Median	0.74628	1.0144	16.597	4	1	Linear	1.0522	1.0007	13.113	4	0	Median	1.1483	1.1939	12.506	3	0	Plateau	3111400000	1656400000	1455000000	737590000	372840000	364750000	1077500000	615820000	461710000	1048300000	535010000	513330000	247980000	132740000	115240000	5894	2370	5564	36797;36798;36799;36800;36801;36802;36803;36804;36805;36806;36807;36808;36809;36810;36811	50339;50340;50341;50342;50343;50344;50345;50346;50347;50348;50349;50350;50351;50352;50353;50354;50355;50356;50357;50358	50358			19	
AVPLIHQEGNR	0	Unmodified	1232.6626	0.66256887	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	2	2	3	24.631	24.135	2;3	7.398E-05	19776	160511_QHF_FH_JSI12i_3	75.819	71.958			0.94443	0.99047	28.522	8	3	Median	2.249	1.8825	NaN	1	1	Median	0.96803	1.1503	5.3765	2	1	Median	0.92819	0.87146	2.1388	2	0	Median	0.87279	0.89015	19.048	3	1	Median	586780000	332190000	254580000	14675000	5343900	9331200	94382000	48915000	45467000	249770000	144510000	105260000	227950000	133420000	94527000	5895	102	5565	36812;36813;36814;36815;36816;36817;36818;36819	50359;50360;50361;50362;50363;50364;50365;50366;50367	50366			9	
AVPLNASK	1	Unmodified	798.45995	0.45995289	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13.5	0.5						2	2					2	2	23.991	16.486	2	0.023955	10736	160513_QHF_FH_JSI11Kac_4	53.968	22.678			0.88479	0.87513	7.0961	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88777	0.87513	2.3253	2	0	Median	0.8331	0.90025	11.732	2	0	Median	55606000	26502000	29105000	0	0	0	0	0	0	33953000	15971000	17982000	21654000	10531000	11123000	5896	5185	5566	36820;36821;36822;36823	50368;50369	50368			2	
AVPMAPAPASPGSSNDSSAR	0	Unmodified	1868.8687	0.86867484	3017	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				37.694	36.471	2	1.6448E-05	32203	160511_QHF_FH_JSI9i_1	79.466	65.503			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5897	3017	5567	36824	50370	50370			1	
AVPMNSALIK	1	Unmodified	1042.5845	0.58450147	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			36.822	35.862	2	0.04985	31387	160511_QHF_FH_JSI10i_2	35.445	0			0.79494	0.9978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79494	0.9978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105830000	48910000	56919000	0	0	0	105830000	48910000	56919000	0	0	0	0	0	0	5898	3832	5568	36825	50371	50371			1	
AVPPTYADLGK	1	Acetyl (Protein N-term)	1172.6077	0.60773933	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.08	5			5	2					2	2	4	4	67.662	62.586	2	1.2933E-07	57306	160511_QHF_FH_JSI11i_1	93.649	84.786			1.0127	1.0367	69.86	10	1	Median	3.5697	2.9405	159.49	2	1	Median	0.86551	1.0191	6.3224	2	0	Median	1.057	1.023	5.7036	3	0	Median	1.0345	1.0981	10.546	3	0	Plateau	2600900000	1239600000	1361400000	697720000	263270000	434450000	671030000	354760000	316270000	570820000	279440000	291390000	661370000	342120000	319250000	5899	1195	5569	36826;36827;36828;36829;36830;36831;36832;36833;36834;36835;36836;36837	50372;50373;50374;50375;50376;50377;50378;50379;50380;50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392;50393;50394;50395;50396;50397;50398;50399;50400;50401;50402;50403	50377			32	
AVPPTYADLGKSAR	1	Acetyl (K);Acetyl (Protein N-term)	1528.7886	0.78855725	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	75.475	66.9	2	0.0013267	26416	160513_QHF_FH_JSI10Kac_1	65.574	50.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5900	1195	5570	36838;36839;36840	50404;50405;50406	50406	1063		3	
AVPQNHFLNK	1	Unmodified	1166.6196	0.61964142	3462	Q8IYA6	CKAP2L	Cytoskeleton-associated protein 2-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.918	26.88	3	0.0005825	22366	160511_QHF_FH_JSI12i_3	72.607	54.295			0.72768	0.75424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72768	0.75424	NaN	1	1	Median	24773000	11803000	12970000	0	0	0	0	0	0	0	0	0	24773000	11803000	12970000	5901	3462	5571	36841	50407	50407			1	
AVPREELFVTSK	1	Unmodified	1374.7507	0.75071518	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		2	8						4	4	4	3	3	47.316	43.839	2;3	6.9095E-15	38306	160511_QHF_FH_JSI11i_3	155.97	129.93			1.063	1.0128	11.2	13	0	Median	1.4625	1.2015	10.675	4	0	Median	0.93604	1.077	11.361	3	0	Plateau	1.1673	1.1041	11.523	3	0	Plateau	1.0642	1.0555	4.8673	3	0	Plateau	4482900000	2196000000	2286900000	836670000	302180000	534490000	1282500000	678620000	603850000	1756500000	895170000	861300000	607270000	320010000	287260000	5902	1054	5572	36842;36843;36844;36845;36846;36847;36848;36849;36850;36851;36852;36853;36854;36855	50408;50409;50410;50411;50412;50413;50414;50415;50416;50417;50418;50419;50420;50421;50422;50423;50424;50425;50426	50412			19	
AVPSWFVR	0	Unmodified	960.51814	0.51813647	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	3	2	1	1	64.612	62.656	2	5.3388E-05	52627	160511_QHF_FH_JSI10i_3	135.35	90.739			1.0743	1.015	19.122	7	0	Median	1.3474	1.0607	20.572	3	0	Median	0.93973	1.1167	24.748	2	0	Median	0.97558	0.9349	NaN	1	0	Median	0.9149	0.90243	NaN	1	0	Median	1719100000	835710000	883380000	598540000	265150000	333390000	463510000	242630000	220870000	436750000	217800000	218940000	220300000	110120000	110180000	5903	1520	5573	36856;36857;36858;36859;36860;36861;36862	50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439	50430			13	
AVPTDEAR	0	Unmodified	857.4243	0.42429566	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.408	10.024	2	0.0016392	7655	160511_QHF_FH_JSI11i_1	86.794	72.018			1.1438	1.1608	6.2608	4	0	Median	1.2644	1.0538	NaN	1	0	Median	0.99743	1.197	NaN	1	0	Median	1.2336	1.2051	NaN	1	0	Median	1.0605	1.1258	NaN	1	0	Median	8432400000	3905000000	4527500000	1675900000	661910000	1014000000	2186100000	1095600000	1090500000	2120600000	958660000	1161900000	2449800000	1188800000	1261000000	5904	2009;2722	5574	36863;36864;36865;36866	50440;50441;50442;50443;50444;50445;50446	50440			7	
AVPTGDASK	1	Unmodified	844.42905	0.42904669	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	5.54	4	3			3	3				1	4	4	4	10.248	6.6783	2	0.00014996	6602	160511_QHF_FH_JSI12i_1	89.355	47.852			0.8617	0.92521	13.602	13	0	Median	1.0688	0.89724	NaN	1	0	Median	0.78435	0.93776	7.1031	4	0	Median	0.95558	0.94191	22.284	4	0	Median	0.89605	0.94563	12.803	4	0	Median	8306800000	3977700000	4329200000	1874300000	794280000	1080100000	2159600000	1015700000	1143900000	2102100000	1013400000	1088700000	2170800000	1154300000	1016500000	5905	1192	5575	36867;36868;36869;36870;36871;36872;36873;36874;36875;36876;36877;36878;36879	50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461;50462	50451			16	
AVPTWASVQVVDDPGSLASVESPGTPK	1	Unmodified	2693.3548	0.3548257	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			93.491	93.481	3	0.0037214	84732	160511_QHF_FH_JSI10i_1	34.781	27.906			0.84038	0.95175	18.336	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84038	0.95175	18.336	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46316000	25171000	21144000	0	0	0	46316000	25171000	21144000	0	0	0	0	0	0	5906	3411	5576	36880;36881	50463;50464	50464			2	
AVPVESPVQK	1	Unmodified	1052.5866	0.58660996	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	32.961	30.664	2	0.00051445	26821	160511_QHF_FH_JSI9i_1	72.23	62.449			0.91872	0.95167	8.9396	5	1	Median	1.055	0.86737	NaN	1	0	Median	0.86759	1.0446	NaN	1	0	Median	0.97545	0.97112	11.918	2	1	Median	0.91872	0.95167	NaN	1	0	Median	263670000	124980000	138680000	75277000	38039000	37238000	64938000	34660000	30278000	75328000	30207000	45122000	48124000	22079000	26045000	5907	3691	5577	36882;36883;36884;36885;36886	50465;50466;50467;50468;50469;50470;50471;50472;50473	50473			9	
AVPVESPVQKV	1	Unmodified	1151.655	0.65502388	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.149	43.483	2	0.0030666	39165	160511_QHF_FH_JSI11i_1	75.378	69.597			0.60572	0.75298	26.213	4	4	Linear	0.57593	0.46716	NaN	1	1	Median	0.47865	0.55818	NaN	1	1	Median	0.63705	0.61014	NaN	1	1	Median	0.81648	0.87126	NaN	1	1	Median	1179200000	798200000	380960000	227890000	165760000	62137000	365020000	280140000	84875000	328820000	211930000	116890000	257430000	140370000	117060000	5908	3691	5578	36887;36888;36889;36890	50474;50475;50476;50477	50474			4	
AVPVGGTTVSLFGK	1	Unmodified	1331.7449	0.74490152	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	70.567	69.916	2	0.00018935	60530	160511_QHF_FH_JSI12i_3	91.937	76.786			1.1563	1.0951	14.366	5	0	Median	1.2891	1.0951	NaN	1	0	Median	1.0439	1.2829	NaN	1	0	Median	1.1563	1.0824	NaN	1	0	Median	1.1512	1.2213	24.532	2	0	Median	143600000	65877000	77725000	21745000	8558100	13187000	22555000	11208000	11346000	28991000	14085000	14906000	70312000	32025000	38286000	5909	3636	5579	36891;36892;36893;36894;36895	50478;50479;50480;50481;50482	50482			5	
AVPVPNMTPSGVGR	0	Unmodified	1380.7184	0.71836919	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	54.278	53.408	2	3.1555E-07	46800	160511_QHF_FH_JSI9i_2	90.685	64.747			0.93126	0.96274	14.085	7	3	Median	1.0793	0.90962	14.326	2	0	Median	0.75005	0.89095	10.96	2	1	Median	0.93126	0.95432	NaN	1	0	Median	1.0161	1.1097	16.624	2	2	Median	649310000	319640000	329670000	134060000	64835000	69221000	208270000	119700000	88572000	97337000	49055000	48283000	209640000	86050000	123590000	5910	3111	5580	36896;36897;36898;36899;36900;36901;36902;36903;36904;36905	50483;50484;50485;50486;50487;50488;50489;50490;50491;50492	50490			10	
AVPVSVVGIFSYDGAQDQFHK	1	Unmodified	2263.1273	0.12733236	4252	Q96T21	SECISBP2	Selenocysteine insertion sequence-binding protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.074	91.008	3	1.4591E-05	78992	160511_QHF_FH_JSI12i_3	77.031	67.747			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13223000	0	13223000	0	0	0	0	0	0	0	0	0	13223000	0	13223000	5911	4252	5581	36906	50493	50493			1	
AVPVWDVLASGYVSR	0	Unmodified	1617.8515	0.85149185	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	3	1	98.83	98.664	2;3	0.0036478	86541	160511_QHF_FH_JSI11i_2	32.702	19.502			0.82598	0.80671	41.683	5	2	Median	1.2265	1.1011	NaN	1	1	Median	0.93056	1.1735	NaN	1	0	Median	0.8116	0.79182	2.6353	2	0	Median	0.39395	0.41046	NaN	1	1	Median	43326000	24143000	19183000	4556700	1941200	2615500	11554000	7452700	4101500	20459000	10174000	10286000	6755700	4575800	2179900	5912	1898	5582	36907;36908;36909;36910;36911;36912;36913	50494;50495;50496;50497;50498;50499	50497			4	
AVQADGQVK	1	Unmodified	914.48214	0.48214489	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.4972	6.1862	2	1.1463E-05	5770	160511_QHF_FH_JSI9i_1	110.87	14.619			0.7231	0.79211	14.204	7	0	Median	1.2004	0.98866	NaN	1	0	Median	0.60103	0.71176	15.127	2	0	Median	0.76325	0.7554	12.313	2	0	Median	0.76215	0.8022	8.2017	2	0	Median	1887600000	1050700000	836920000	467630000	212540000	255090000	491750000	305660000	186090000	459230000	262420000	196810000	469010000	270080000	198930000	5913	3766	5583	36914;36915;36916;36917;36918;36919;36920	50500;50501;50502;50503;50504;50505;50506;50507;50508;50509	50506			10	
AVQADQER	0	Unmodified	915.44101	0.44100836	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.43	2.1352	2	0.00024966	2936	160511_QHF_FH_JSI12i_1	116.37	67.81			0.81044	0.83121	17.819	7	0	Median	0.98264	0.8165	NaN	1	0	Median	0.9822	1.1743	2.6204	2	0	Median	0.80657	0.79182	1.8318	2	0	Median	0.79439	0.85779	4.4528	2	0	Median	2438300000	1299400000	1139000000	359310000	162290000	197030000	654190000	349670000	304520000	761440000	421670000	339770000	663400000	365740000	297660000	5914	3968	5584	36921;36922;36923;36924;36925;36926;36927	50510;50511;50512;50513;50514;50515	50510			6	
AVQADQERER	0	Unmodified	1200.5847	0.58471248	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.19	4	7	6				6	7		3	10	9	8	5.5499	1.524	2;3	9.4917E-55	3032	160511_QHF_FH_JSI11i_3	227.88	181.88			1.0398	1.0901	12.411	28	0	Plateau	1.3179	1.0791	6.5207	3	0	Median	1.0612	1.2769	13.353	10	0	Linear	1.0721	1.0592	16.907	7	0	Median	0.95673	0.9833	9.8151	8	0	Median	6647700000	3122100000	3525600000	1726700000	660470000	1066200000	1920500000	986670000	933830000	1971300000	951710000	1019600000	1029300000	523270000	505990000	5915	3968	5585	36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946;36947;36948;36949;36950;36951;36952;36953;36954;36955;36956;36957	50516;50517;50518;50519;50520;50521;50522;50523;50524;50525;50526;50527;50528;50529;50530;50531;50532;50533;50534;50535;50536;50537;50538;50539;50540;50541;50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558;50559;50560	50517			45	
AVQAQGGESQQEAQR	0	Unmodified	1585.7445	0.7444606	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				2	2	4	3	8.4008	6.8268	2;3	1.1804E-80	5528	160511_QHF_FH_JSI11i_1	243.11	215.37			0.96362	0.97521	20.493	11	2	Median	1.3033	1.0693	13.029	2	0	Median	0.80942	0.95643	10.098	2	0	Median	0.98308	0.94167	22.749	4	2	Median	0.95922	0.97674	33.229	3	0	Median	965390000	508220000	457170000	203810000	91976000	111840000	263670000	146430000	117240000	283800000	149080000	134720000	214110000	120730000	93382000	5916	2587	5586	36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968	50561;50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572	50561			12	
AVQDLCGWR	0	Unmodified	1103.5182	0.51821282	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	42.623	42.208	2	9.3602E-05	36234	160511_QHF_FH_JSI11i_2	94.302	48.584			1.1491	1.1747	17.744	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0026	1.22	NaN	1	0	Median	1.1491	1.1285	0.31751	2	0	Median	1.6094	1.6389	NaN	1	0	Median	285010000	117640000	167370000	0	0	0	84803000	41204000	43599000	158640000	59957000	98686000	41562000	16481000	25081000	5917	5200	5587	36969;36970;36971;36972	50573;50574;50575;50576;50577;50578	50574			6	
AVQEIMQEK	1	Oxidation (M)	1090.5329	0.53285983	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	17.462	15.065	2	0.00074318	8175	160513_QHF_FH_JSI12Kac_3	88.819	38.692			1.0193	0.85554	29.579	7	0	Median	1.0193	0.85554	NaN	1	0	Median	0.66503	0.77437	NaN	1	0	Median	0.82648	0.78779	48.524	2	0	Median	1.0333	1.1229	24.06	3	0	Median	397080000	211400000	185680000	63944000	25696000	38248000	69020000	41124000	27896000	66804000	41570000	25234000	197310000	103010000	94306000	5918	1205	5588	36973;36974;36975;36976;36977;36978;36979	50579;50580;50581;50582;50583	50583		826	5	
AVQEIMQEK	1	Unmodified	1074.5379	0.53794521	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	2	1	32.875	27.344	2	8.193E-05	23509	160511_QHF_FH_JSI9i_1	113.71	50.989			1.2719	1.3591	40.205	5	2	Median	1.2719	1.0488	NaN	1	1	Median	1.5821	1.8695	NaN	1	0	Median	1.0176	0.991	58.621	2	1	Median	1.2473	1.3591	NaN	1	0	Median	1494200000	728050000	766170000	758500000	390480000	368020000	3275800	1740400	1535400	728460000	333960000	394490000	3992700	1869200	2123400	5919	1205	5588	36980;36981;36982;36983;36984	50584;50585;50586;50587	50586			4	
AVQELVHPVVDR	0	Unmodified	1360.7463	0.7462985	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	40.85	40.377	2;3	1.1257E-05	34410	160511_QHF_FH_JSI12i_3	81.185	69.973			1.1926	1.1268	20.627	7	0	Median	1.809	1.5396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1926	1.1268	20.105	3	0	Median	0.95678	1.0351	17.158	3	0	Median	908750000	399360000	509400000	84172000	34366000	49806000	0	0	0	400770000	180260000	220510000	423810000	184730000	239080000	5920	21	5589	36985;36986;36987;36988;36989;36990;36991;36992	50588;50589;50590;50591;50592;50593;50594;50595;50596;50597	50594			10	
AVQELWLR	0	Unmodified	1013.5658	0.56581494	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	60.386	56.755	2	4.6983E-05	50158	160511_QHF_FH_JSI10i_2	136.11	94.611			1.016	0.9894	11.013	12	0	Median	1.1427	0.98905	21.829	3	0	Median	0.80018	0.98976	2.7888	3	0	Plateau	1.0228	0.96972	5.8937	3	0	Median	1.0092	1.0563	0.86562	3	0	Median	2327600000	1165700000	1161900000	329330000	168270000	161060000	513430000	284530000	228900000	804050000	346090000	457960000	680760000	366760000	314000000	5921	1525	5590	36993;36994;36995;36996;36997;36998;36999;37000;37001;37002;37003;37004	50598;50599;50600;50601;50602;50603;50604;50605;50606;50607;50608;50609;50610;50611;50612;50613;50614;50615;50616	50613			19	
AVQFFVQALR	0	Unmodified	1177.6608	0.66077796	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.615	71.331	2	1.1951E-24	39756	160513_QHF_FH_JSI10Kac_6	182.39	148.84			0.91483	0.87496	10.994	4	0	Median	1.0336	0.88811	NaN	1	0	Median	0.68568	0.81925	NaN	1	0	Median	1.1393	1.0555	NaN	1	0	Median	0.80968	0.862	NaN	1	0	Median	504580000	281990000	222590000	87192000	44792000	42399000	317440000	179680000	137760000	54431000	31128000	23303000	45512000	26383000	19128000	5922	4294	5591	37005;37006;37007;37008	50617;50618;50619;50620	50620			4	
AVQFTEEK	1	Unmodified	950.47091	0.4709115	5559;4944	Q9Y371;Q9NR46	SH3GLB1;SH3GLB2	Endophilin-B1;Endophilin-B2	no	no	0	0	0	0		By MS/MS			2	0		1									1			21.592	20.745	2	0.0041163	17868	160511_QHF_FH_JSI10i_2	69.198	19.608			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5923	5559;4944	5592	37009	50621	50621			1	
AVQGAQQPSLYQIR	0	Unmodified	1557.8263	0.82633974	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.8	1	6	1				1			2	2	2	3	48.156	45.445	2	5.5629E-31	39145	160511_QHF_FH_JSI11i_2	196.88	161.37			0.85143	0.90049	4.7766	6	4	Median	1.0405	0.88345	NaN	1	1	Median	0.79099	0.96181	NaN	1	1	Median	0.88546	0.89131	4.1521	2	0	Median	0.81589	0.88487	6.4574	2	2	Median	253460000	133190000	120270000	52131000	25869000	26261000	36322000	18518000	17804000	82430000	41412000	41018000	82582000	47393000	35189000	5924	2344	5593	37010;37011;37012;37013;37014;37015;37016;37017;37018	50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632	50628			11	
AVQGFFTSNNATR	0	Unmodified	1411.6844	0.68442653	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.3		4	6					6	2	5	4	4	5	46.868	42.968	2;3	1.1577E-30	35343	160511_QHF_FH_JSI9i_3	189.57	180.24			1.1454	1.0999	30.842	15	2	Median	1.3651	1.1082	15.919	5	0	Median	1.0025	1.1975	21.396	4	0	Median	0.86988	0.87012	1.4769	2	0	Median	0.98824	1.0518	54.854	4	2	Median	1030800000	458940000	571910000	382480000	141730000	240760000	399460000	197360000	202100000	133010000	68090000	64923000	115890000	51755000	64133000	5925	313	5594	37019;37020;37021;37022;37023;37024;37025;37026;37027;37028;37029;37030;37031;37032;37033;37034;37035;37036	50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643;50644;50645;50646;50647;50648;50649;50650;50651;50652;50653;50654;50655;50656;50657;50658;50659;50660	50642			28	
AVQGGGATPVVGAVQGPVPGMPPMTQAPR	0	Unmodified	2726.3996	0.39962459	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	79.856	79.34	3	1.7682E-23	72548	160511_QHF_FH_JSI12i_1	126.36	120.1			0.71738	0.87207	7.0129	3	0	Plateau	1.0514	0.87207	NaN	1	0	Median	0.7033	0.83993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92413	0.96211	NaN	1	0	Median	504030000	247450000	256580000	151600000	71529000	80068000	185530000	87888000	97641000	0	0	0	166910000	88033000	78873000	5926	920	5595	37037;37038;37039	50661;50662;50663;50664;50665;50666;50667;50668;50669	50664			9	
AVQGMLDFDYVCSR	0	Unmodified	1659.7385	0.73851229	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	77.136	75.912	2	0.012342	65544	160511_QHF_FH_JSI12i_2	55.98	47.882			1.6402	1.8151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6402	1.8151	NaN	1	1	Median	21005000	4450400	16555000	0	0	0	0	0	0	0	0	0	21005000	4450400	16555000	5927	1798	5596	37040	50670	50670			1	
AVQHCLALLNLTLQK	1	Unmodified	1720.9658	0.96581011	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			78.296	76.899	3	0.00081329	63207	160511_QHF_FH_JSI9i_3	55.186	47.984			0.80041	0.77172	2.6223	2	0	Median	0.93875	0.78616	NaN	1	0	Median	0.68246	0.75754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35645000	21384000	14261000	14896000	7073000	7822600	20750000	14311000	6438900	0	0	0	0	0	0	5928	3862	5597	37041;37042	50671;50672	50672			2	
AVQISKK	2	Acetyl (Protein N-term)	814.49125	0.49125301	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	1	0	1	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	16.366	15.783	2	0.015033	12942	160511_QHF_FH_JSI9i_1	47.849	33.073			1.5235	1.2571	39.658	3	0	Plateau	1.5235	1.2571	NaN	1	0	Median	0.9051	1.0759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57519	0.59299	NaN	1	0	Median	397840000	174660000	223180000	155870000	57686000	98189000	124070000	58060000	66007000	0	0	0	117900000	58919000	58980000	5929	1227	5598	37043;37044;37045	50673;50674	50674			2	
AVQLSYLYLGAMK	1	Unmodified	1455.7796	0.77957246	2704	Q15751	HERC1	Probable E3 ubiquitin-protein ligase HERC1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		84.105	76.265	2	4.0394E-40	41827	160513_QHF_FH_JSI11Kac_6	189.58	138.31			0.87656	0.76612	24.224	3	0	Median	0.87656	0.76612	NaN	1	0	Median	0.6264	0.74997	NaN	1	0	Median	1.1693	1.1527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99585000	51312000	48273000	29664000	14989000	14675000	31271000	18997000	12274000	38649000	17326000	21324000	0	0	0	5930	2704	5599	37046;37047;37048	50675;50676;50677	50675			3	
AVQLTQAMDTSTVGVLLAAK	1	Unmodified	2016.0925	0.092526762	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	4	4	2	97.384	97.21	2;3	4.92E-26	87913	160511_QHF_FH_JSI10i_1	183	163.86			0.9446	0.92835	20.041	12	2	Median	1.4401	1.1872	12.496	3	1	Median	0.79034	0.947	19.355	3	0	Median	0.9446	0.9088	7.3929	4	1	Median	0.73234	0.76441	0.70073	2	0	Median	301960000	159810000	142150000	61533000	28029000	33503000	97227000	55857000	41370000	103500000	50754000	52741000	39707000	25170000	14537000	5931	636	5600	37049;37050;37051;37052;37053;37054;37055;37056;37057;37058;37059;37060;37061	50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693;50694;50695;50696	50686			18	
AVQLYQQTANVFENEER	0	Unmodified	2037.9756	0.97558275	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			67.197	66.594	2	4.4372E-07	60380	160511_QHF_FH_JSI10i_1	92.856	77.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5932	4311	5601	37062;37063	50697;50698	50697			2	
AVQMDELVPLGELTK	1	Unmodified	1641.8648	0.86475866	3202	Q70J99	UNC13D	Protein unc-13 homolog D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	94.298	93.957	2	0.0094329	85447	160511_QHF_FH_JSI11i_1	58.098	46.166			0.55024	0.5335	24.745	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66544	0.63552	NaN	1	1	Median	0.45498	0.44787	NaN	1	1	Median	21735000	13425000	8310500	0	0	0	0	0	0	10063000	5693200	4369300	11673000	7731400	3941100	5933	3202	5602	37064;37065	50699;50700	50699			2	
AVQQVNAMIEK	1	Unmodified	1229.6438	0.64380726	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	2	2	3	38.476	37.954	2	1.5256E-09	34616	160511_QHF_FH_JSI12i_1	128.03	86.605			0.90215	0.9424	23.568	6	5	Median	0.82578	0.67738	NaN	1	0	Median	0.84307	0.9714	23.354	2	2	Median	0.90975	0.8884	31.278	2	2	Median	1.0611	1.0784	NaN	1	1	Median	697740000	377500000	320240000	72128000	34417000	37711000	268260000	157720000	110540000	270170000	137680000	132490000	87182000	47672000	39510000	5934	1654	5603	37066;37067;37068;37069;37070;37071;37072;37073;37074	50701;50702;50703;50704;50705;50706;50707;50708;50709;50710;50711;50712	50706			12	
AVQSGHVNLK	1	Unmodified	1051.5774	0.57744226	2681	Q15545	TAF7	Transcription initiation factor TFIID subunit 7	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	102.81	102.82	2;3	0.014972	8410	160511_QHF_FH_JSI12i_3	34.695	16.632			0.91677	0.95239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91677	0.95239	NaN	1	0	Median	203790000	109340000	94447000	0	0	0	0	0	0	0	0	0	203790000	109340000	94447000	5935	2681	5604	37075;37076	50713;50714	50714			2	
AVQSLDK	1	Unmodified	759.41267	0.41266834	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.17	5.79	2					3	1				2	2	2	13.957	6.6029	2	0.011216	7971	160511_QHF_FH_JSI12i_1	62.659	13.069			2.0025	2.2068	86.851	4	4	Median	NaN	NaN	NaN	0	0	Median	2.0265	2.3879	NaN	1	1	Median	0.94811	0.95175	122.69	2	2	Median	1.9786	2.149	NaN	1	1	Median	17672000	8900200	8771900	0	0	0	3615100	1701200	1913900	9318700	4764200	4554500	4738300	2434800	2303500	5936	296	5605	37077;37078;37079;37080;37081;37082	50715;50716;50717;50718;50719;50720	50715			6	
AVQSSTSIR	0	Unmodified	947.50361	0.50360861	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.19	4	3					3	1		3	3	3	2	11.339	7.9211	2	0.00058139	7365	160511_QHF_FH_JSI9i_2	88.358	59.83			0.98395	0.9926	8.0855	11	3	Median	1.2853	1.07	8.1655	3	2	Plateau	0.7742	0.91787	4.6514	3	1	Plateau	0.99541	0.99443	1.6207	3	0	Plateau	0.92914	0.98782	4.3829	2	0	Median	1190800000	555130000	635700000	313210000	142880000	170330000	369250000	178400000	190850000	344700000	154840000	189860000	163670000	79006000	84664000	5937	2456	5606	37083;37084;37085;37086;37087;37088;37089;37090;37091;37092;37093	50721;50722;50723;50724;50725;50726;50727;50728;50729;50730;50731;50732;50733	50730			13	
AVQSTINHVK	1	Unmodified	1095.6037	0.60365701	4174	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.908	10.998	3	0.022367	8311	160511_QHF_FH_JSI12i_3	34.755	21.663			1.5394	1.5435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5394	1.5435	NaN	1	1	Median	91174000	43872000	47303000	0	0	0	0	0	0	0	0	0	91174000	43872000	47303000	5938	4174	5607	37094	50734	50734			1	
AVQTLQMELQQIMK	1	Unmodified	1659.8688	0.86879818	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.539	1	7	2							2	3	3	2	94.35	94.098	2;3	1.6872E-40	82711	160511_QHF_FH_JSI11i_2	208.74	169.44			1.0099	1.1096	21.302	10	2	Median	1.1232	0.97758	18.081	2	0	Median	0.81508	0.95987	16.43	3	0	Median	1.114	1.1177	3.7103	3	1	Plateau	0.78334	0.84262	44.695	2	1	Median	498580000	243900000	254680000	104010000	56358000	47651000	170010000	87290000	82724000	181430000	80543000	100890000	43131000	19710000	23421000	5939	2242	5608	37095;37096;37097;37098;37099;37100;37101;37102;37103;37104	50735;50736;50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747;50748;50749	50743			15	
AVQTSIATAYR	0	Unmodified	1179.6248	0.62478638	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.16	33.118	2	0.0039598	28826	160511_QHF_FH_JSI9i_2	66.568	26.523			1.3532	1.144	NaN	1	1	Median	1.3532	1.144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29283000	13434000	15849000	29283000	13434000	15849000	0	0	0	0	0	0	0	0	0	5940	2620	5609	37105	50750	50750			1	
AVQVHQDTLR	0	Unmodified	1165.6204	0.62036971	5381;5387	Q9UKV8;Q9UL18	AGO2;AGO1	Protein argonaute-2;Protein argonaute-1	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	14.652	14.507	2;3	6.4989E-05	11301	160511_QHF_FH_JSI12i_3	90.15	56.6			1.0376	1.1462	10.406	5	0	Median	NaN	NaN	NaN	0	0	Median	0.95921	1.184	NaN	1	0	Median	1.0476	1.0463	12.899	2	0	Median	1.1231	1.1527	11.297	2	0	Median	502400000	258910000	243490000	0	0	0	59240000	33639000	25602000	215420000	114190000	101230000	227740000	111080000	116660000	5941	5381;5387	5610	37106;37107;37108;37109;37110;37111	50751;50752;50753;50754;50755	50755			5	
AVSAAEEVK	1	Unmodified	902.47091	0.4709115	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	15.413	12.649	2	0.00087731	10935	160511_QHF_FH_JSI12i_1	81.972	49.221			1.0272	1.0579	39.829	6	0	Median	1.0349	0.85825	NaN	1	0	Median	0.84359	0.98702	25.328	2	0	Median	1.7424	1.6753	53.52	2	0	Median	0.95092	0.97538	NaN	1	0	Median	691020000	309400000	381620000	192650000	75066000	117580000	155910000	73179000	82730000	154970000	64537000	90430000	187490000	96617000	90877000	5942	2899	5611	37112;37113;37114;37115;37116;37117	50756;50757;50758;50759;50760;50761	50758			6	
AVSDASAGDYGSAIETLVTAISLIK	1	Unmodified	2451.2745	0.27445011	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.05	2	8	6						3	3	4	6	6	103.38	101.77	2;3	1.9615E-242	92800	160511_QHF_FH_JSI11i_3	416.15	396.04			0.96698	0.9596	9.501	18	0	Median	1.1309	0.98036	2.6712	3	0	Plateau	0.74823	0.90896	8.1886	3	0	Median	0.9861	0.98767	14.189	6	0	Median	0.9392	0.98477	7.0867	6	0	Median	2426800000	1205500000	1221300000	435000000	209190000	225810000	210880000	117420000	93462000	726020000	359460000	366570000	1054900000	519410000	535470000	5943	2746	5612	37118;37119;37120;37121;37122;37123;37124;37125;37126;37127;37128;37129;37130;37131;37132;37133;37134;37135;37136	50762;50763;50764;50765;50766;50767;50768;50769;50770;50771;50772;50773;50774;50775;50776;50777;50778;50779;50780;50781;50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793	50763			32	
AVSDMIMELAVHAQFITTTFRPELLESADK	1	Unmodified	3362.689	0.68904948	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	98.796	90.368	4	1.06E-123	54329	160513_QHF_FH_JSI10Kac_6	242.01	219.91			0.68843	0.8827	18.374	4	0	Linear	0.79984	0.66943	NaN	1	0	Median	0.66334	0.80048	NaN	1	0	Median	1.0173	0.97337	NaN	1	0	Median	0.93534	0.98701	NaN	1	0	Median	645800000	355780000	290020000	198530000	111160000	87373000	269700000	160300000	109400000	72609000	32594000	40015000	104950000	51720000	53232000	5944	5479	5613	37137;37138;37139;37140	50794;50795;50796	50796			3	
AVSDWLIASVEGR	0	Unmodified	1401.7252	0.72522871	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	3	1	1	89.795	89.168	2;3	2.9689E-12	74343	160511_QHF_FH_JSI10i_3	119.45	100.18			1.2057	1.071	8.4232	5	2	Median	1.2947	1.063	1.0547	2	1	Median	0.89743	1.0697	15.788	2	1	Median	1.2057	1.1371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160880000	77421000	83460000	52114000	20545000	31568000	91644000	50457000	41187000	17124000	6418700	10705000	0	0	0	5945	3951	5614	37141;37142;37143;37144;37145;37146;37147	50797;50798;50799;50800;50801;50802;50803;50804	50799			7	
AVSEEQQPALK	1	Unmodified	1198.6194	0.61936665	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	24.607	20.172	2	1.2272E-29	16998	160511_QHF_FH_JSI9i_1	189.38	152.98			0.84906	0.90267	19.215	9	3	Median	0.98229	0.81045	NaN	1	0	Median	0.79762	0.90267	16.943	3	1	Median	0.80585	0.78405	29.484	2	1	Median	0.69256	0.73449	23.067	3	1	Plateau	2223900000	1338100000	885780000	474760000	279600000	195160000	490520000	321510000	169010000	608410000	376080000	232330000	650180000	360910000	289270000	5946	3634	5615	37148;37149;37150;37151;37152;37153;37154;37155;37156;37157	50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816;50817;50818;50819;50820	50814			16	
AVSEGNLLLLHEALAK	1	Unmodified	1676.9461	0.94612052	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.672	75.899	3	8.0346E-05	65848	160511_QHF_FH_JSI12i_3	82.121	74.145			0.19832	0.20236	153.94	4	4	Linear	0.011328	0.0090735	NaN	1	1	Median	0.016391	0.019078	NaN	1	1	Median	0.11448	0.11047	NaN	1	1	Median	0.24981	0.25507	NaN	1	1	Median	1365500000	1177800000	187690000	214580000	211710000	2873500	121050000	117790000	3254300	629100000	553160000	75938000	400800000	295180000	105620000	5947	2909	5616	37158;37159;37160;37161	50821;50822;50823;50824	50824			4	
AVSELELLGFIKPTK	2	Unmodified	1643.9498	0.94980892	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	93.564	93.277	3	7.7788E-17	80670	160511_QHF_FH_JSI12i_3	118.33	113.94			0.86598	0.91898	13.863	6	6	Median	1.1476	0.98905	NaN	1	1	Median	0.77226	0.96142	NaN	1	1	Median	0.85457	0.80618	12.134	2	2	Median	0.82903	0.85806	20.816	2	2	Median	169860000	79608000	90257000	11880000	4093400	7786900	14220000	9020400	5199400	46060000	21048000	25013000	97704000	45446000	52258000	5948	5232	5617	37162;37163;37164;37165;37166;37167;37168;37169;37170	50825;50826;50827;50828;50829;50830;50831;50832;50833	50833			9	
AVSESQLK	1	Acetyl (Protein N-term)	902.47091	0.4709115	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	1	0	0				By MS/MS	11	0				1									1	35.901	27.292	2	0.034704	11720	160513_QHF_FH_JSI12Kacf_1	34.808	18.032			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5949	4319	5618	37171	50834	50834			1	
AVSFHLVHR	0	Unmodified	1064.5879	0.58794737	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	38.571	29.468	3	0.00065189	16375	160513_QHF_FH_JSI10Kac_6	72.643	58.436			0.84869	1.0089	20.598	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.84869	1.0089	NaN	1	0	Median	1.4295	1.4431	NaN	1	1	Median	0.96916	1.0113	NaN	1	1	Median	37164000	19327000	17836000	0	0	0	25326000	13474000	11852000	4726100	1954200	2771800	7111100	3898700	3212400	5950	4085	5619	37172;37173;37174;37175;37176	50835;50836;50837;50838;50839;50840	50839			6	
AVSGASAGDYSDAIETLLTAIAVIK	1	Unmodified	2435.2795	0.27953549	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		12	8						4	6	4	7	7	103.64	102.19	2;3;4	2.897E-185	91639	160511_QHF_FH_JSI11i_2	346.82	322.63			0.97496	0.96161	17.081	24	7	Median	1.0022	0.87221	8.1825	6	3	Median	0.69458	0.82138	9.9724	4	1	Median	1.2221	1.1649	17.671	7	2	Median	0.95232	0.99333	14.803	7	1	Median	1486600000	763650000	722990000	444240000	222680000	221550000	324830000	198760000	126070000	407040000	185330000	221710000	310530000	156870000	153670000	5951	3553	5620	37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200	50841;50842;50843;50844;50845;50846;50847;50848;50849;50850;50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862;50863;50864;50865;50866;50867;50868;50869;50870;50871;50872;50873;50874	50860			33	
AVSGKEPR	1	Unmodified	842.46102	0.46101552	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		4.6984	4.3804	2;3	0.0015217	2282	160511_QHF_FH_JSI10i_3	73.665	27.649			1.1272	1.0975	12.971	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0278	1.1844	10.781	2	0	Median	1.0295	0.98755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1283500000	623740000	659760000	0	0	0	970570000	464350000	506230000	312930000	159390000	153540000	0	0	0	5952	313	5621	37201;37202;37203;37204	50875;50876;50877;50878	50875			4	
AVSIFNK	1	Unmodified	777.43849	0.43848916	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	36.065	35.272	2	0.0047315	30152	160511_QHF_FH_JSI12i_3	97.473	52.862			1.455	1.3412	5.5654	2	1	Median	1.6715	1.3951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2666	1.2895	NaN	1	0	Median	143840000	68587000	75249000	35015000	14294000	20721000	0	0	0	0	0	0	108820000	54293000	54528000	5953	3274	5622	37205;37206	50879;50880;50881	50881			3	
AVSILPLLGHGVPR	0	Unmodified	1427.8613	0.86126868	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	80.204	79.483	3	4.6897E-05	66758	160511_QHF_FH_JSI10i_3	90.731	78.816			1.0156	1.0042	6.731	5	0	Median	1.1578	0.9453	NaN	1	0	Median	0.84682	1.0283	3.3539	2	0	Median	1.0156	0.94629	NaN	1	0	Median	1.0999	1.1028	NaN	1	0	Median	187970000	92796000	95170000	43016000	19276000	23740000	73420000	35281000	38140000	45060000	22667000	22394000	26469000	15572000	10897000	5954	5543	5623	37207;37208;37209;37210;37211	50882;50883;50884;50885;50886;50887;50888;50889	50885			8	
AVSISPTNVILTWK	1	Unmodified	1527.8661	0.86607929	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	92.709	92.687	2	0.0005109	80373	160511_QHF_FH_JSI12i_3	93.345	81.709			0.37031	0.37664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37031	0.37664	NaN	1	1	Median	26031000	16864000	9167000	0	0	0	0	0	0	0	0	0	26031000	16864000	9167000	5955	2327	5624	37212	50890	50890			1	
AVSISTEPPTYLR	0	Unmodified	1432.7562	0.75619449	2310	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.02	2	2					1				2	1	2	61.944	61.289	2	5.7494E-05	50013	160511_QHF_FH_JSI11i_2	167.09	122.89			0.76591	0.84871	105.14	4	3	Median	NaN	NaN	NaN	0	0	Median	0.78103	0.93585	NaN	1	1	Median	0.75107	0.76968	NaN	1	1	Median	0.43395	0.4435	169.58	2	1	Median	310030000	178830000	131200000	0	0	0	49458000	29399000	20059000	137000000	73686000	63311000	123570000	75742000	47832000	5956	2310	5625	37213;37214;37215;37216;37217	50891;50892;50893;50894;50895	50894			4	
AVSLVTDSTSTFLSQTTYALIEAITEYTK	1	Unmodified	3152.6017	0.60165749	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.06	98.344	3	4.8553E-41	58202	160513_QHF_FH_JSI10Kac_6	153.84	141.91			0.59681	0.68315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59681	0.68315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59130000	41311000	17819000	0	0	0	59130000	41311000	17819000	0	0	0	0	0	0	5957	4939	5626	37218	50896	50896			1	
AVSNINTLLDK	1	Unmodified	1186.6558	0.65575216	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	56.258	55.589	2	0.00013513	47710	160511_QHF_FH_JSI12i_2	95.483	52.4			0.14863	0.16176	26.771	4	4	Median	NaN	NaN	NaN	0	0	Median	0.13475	0.1559	NaN	1	1	Median	0.13101	0.12959	36.578	2	2	Median	0.16393	0.18221	NaN	1	1	Median	1096000000	963770000	132260000	0	0	0	205300000	183060000	22237000	680840000	602090000	78752000	209900000	178620000	31272000	5958	2947	5627	37219;37220;37221;37222	50897;50898;50899;50900	50898			4	
AVSNLLSTQLTFQAIHK	1	Unmodified	1870.0312	0.031247134	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	2	2	1	79.696	78.261	3	7.9756E-31	66432	160511_QHF_FH_JSI10i_3	186.77	171.5			0.86193	0.90566	7.0102	6	3	Median	1.0911	0.88604	NaN	1	0	Median	0.80532	0.94556	3.0017	2	1	Median	0.95996	0.91033	8.7579	2	2	Median	0.8269	0.81187	NaN	1	0	Median	745980000	386560000	359420000	122880000	70105000	52777000	164910000	81244000	83670000	329210000	164960000	164240000	128980000	70246000	58734000	5959	2535	5628	37223;37224;37225;37226;37227;37228	50901;50902;50903;50904;50905;50906;50907	50903			7	
AVSPSNPK	1	Unmodified	798.42357	0.42356738	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.3947	6.7522	2	0.016537	4413	160511_QHF_FH_JSI9i_1	49.442	23.218			0.87132	0.72176	NaN	1	0	Median	0.87132	0.72176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215820000	112300000	103520000	215820000	112300000	103520000	0	0	0	0	0	0	0	0	0	5960	2521	5629	37229	50908	50908			1	
AVSQIVTVYDK	1	Unmodified	1221.6605	0.66050319	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	10	5.66		1					2				1		2	53.97	47.933	2	0.0058968	26419	160513_QHF_FH_JSI10Kac_4	59.84	36.52			0.75286	0.83722	2.5054	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72512	0.85219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78166	0.82252	NaN	1	1	Median	22634000	11981000	10653000	0	0	0	6145200	4143700	2001500	0	0	0	16489000	7837800	8651200	5961	2988	5630	37230;37231;37232	50909;50910;50911;50912	50911			4	
AVSSQMIGK	1	Unmodified	919.4797	0.47970205	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	21.341	20.515	2	0.00315	17496	160511_QHF_FH_JSI9i_2	61.582	38.563			0.65503	0.70604	48.151	4	2	Median	1.0541	0.88901	NaN	1	0	Median	0.46655	0.56073	NaN	1	1	Median	0.34913	0.35012	NaN	1	1	Median	0.91966	1.0085	NaN	1	0	Median	259170000	161270000	97898000	70231000	37241000	32989000	53145000	34190000	18955000	72799000	53462000	19337000	62997000	36380000	26617000	5962	5223	5631	37233;37234;37235;37236	50913;50914;50915;50916	50914			4	
AVSTCAHLFWSGR	0	Unmodified	1490.7089	0.70886714	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		60.037	50.96	2	2.7885E-36	28018	160513_QHF_FH_JSI10Kac_6	212.89	184.32			0.51252	0.54996	67.648	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7538	0.8873	NaN	1	1	Median	0.34847	0.34087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63645000	35378000	28268000	0	0	0	48572000	24501000	24071000	15073000	10876000	4196800	0	0	0	5963	4212	5632	37237;37238	50917;50918	50918			2	
AVSTGVKVPR	1	Acetyl (K);Acetyl (Protein N-term)	1096.6241	0.6240581	2715	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11	0				2							1		1	57.622	48.222	2	0.0016512	19570	160513_QHF_FH_JSI10Kac_1	69.423	53.221			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5964	2715	5633	37239;37240	50919;50920	50920	2644		2	
AVSTLIDSLKK	2	Unmodified	1173.6969	0.69688869	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				56.738	55.182	3	0.011965	45123	160511_QHF_FH_JSI9i_3	42.425	34.355			1.091	0.8657	85.327	2	2	Median	1.091	0.8657	85.327	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60034000	34160000	25875000	60034000	34160000	25875000	0	0	0	0	0	0	0	0	0	5965	3262	5634	37241;37242	50921;50922	50921			2	
AVSTTFGSR	0	Unmodified	924.46649	0.46649483	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		19.033	18.469	2	0.0088025	15097	160511_QHF_FH_JSI10i_3	52.482	24.308			0.76491	0.78184	9.2667	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7409	0.83479	NaN	1	1	Median	0.78969	0.73225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117610000	77423000	40191000	0	0	0	28913000	17503000	11409000	88702000	59920000	28782000	0	0	0	5966	5202	5635	37243;37244;37245	50923;50924;50925	50925			3	
AVSVEAAVTPAEPYAR	0	Unmodified	1629.8362	0.83623572	2786	Q24JP5	TMEM132A	Transmembrane protein 132A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			54.659	53.871	2	3.5549E-05	48612	160511_QHF_FH_JSI10i_1	110.31	87.389			1.0141	0.97946	23.663	2	2	Median	1.4014	1.1579	NaN	1	1	Median	0.73382	0.82855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78588000	31687000	46901000	46283000	16440000	29843000	32306000	15247000	17059000	0	0	0	0	0	0	5967	2786	5636	37246;37247	50926;50927	50926			2	
AVSVFFK	1	Unmodified	796.44833	0.44832557	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	3	4	3	3	56.472	52.243	2	0.0023955	45937	160511_QHF_FH_JSI11i_3	111.28	74.691			0.87672	0.99953	20.498	13	0	Median	1.3759	1.1108	10.446	3	0	Median	0.93064	1.1182	15.943	4	0	Median	0.87672	0.84443	17.311	3	0	Median	0.70237	0.75139	12.069	3	0	Median	5232800000	2549800000	2683000000	1097100000	435170000	661920000	1140000000	587410000	552560000	1194200000	571590000	622560000	1801600000	955640000	845990000	5968	289	5637	37248;37249;37250;37251;37252;37253;37254;37255;37256;37257;37258;37259;37260	50928;50929;50930;50931;50932;50933;50934;50935;50936;50937;50938;50939;50940;50941;50942;50943;50944;50945;50946;50947;50948;50949;50950;50951;50952;50953;50954;50955;50956;50957;50958;50959;50960;50961	50929			34	
AVSVTPIRDTK	1	Acetyl (Protein N-term)	1227.6823	0.68230126	4947	Q9NR56	MBNL1	Muscleblind-like protein 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	40.625	39.865	2	1.2522E-13	36313	160511_QHF_FH_JSI12i_1	63.076	23.008			0.96929	0.89483	62.181	5	1	Median	1.0223	0.83433	NaN	1	0	Median	1.1208	1.3588	115.05	2	1	Median	0.96929	0.94231	NaN	1	0	Median	0.85445	0.89483	NaN	1	0	Median	1069100000	501070000	567990000	243480000	125110000	118370000	217580000	72935000	144650000	294200000	141090000	153110000	313790000	161930000	151860000	5969	4947	5638	37261;37262;37263;37264;37265;37266	50962;50963;50964;50965;50966;50967;50968;50969;50970	50965			9	
AVSWTFSEENVIR	0	Unmodified	1536.7573	0.75725712	5557	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		4	2									3	3	73.822	73.138	2	4.0262E-05	64159	160511_QHF_FH_JSI11i_2	169.93	118.59			1.1051	1.127	8.1889	6	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2774	1.2361	10.786	3	2	Median	0.98952	1.0818	4.8784	3	2	Median	241450000	94820000	146630000	0	0	0	0	0	0	147210000	52672000	94540000	94237000	42148000	52090000	5970	5557	5639	37267;37268;37269;37270;37271;37272	50971;50972;50973;50974;50975;50976	50975			6	
AVTALVK	1	Unmodified	700.44833	0.44832557	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.799	6	4	3							3	3	3	4	23.851	23.253	2	0.0089406	19467	160511_QHF_FH_JSI11i_2	81.297	30.331			1.0095	0.97649	22.756	13	2	Median	1.019	0.8634	16.231	3	1	Plateau	0.59934	0.70576	12.109	3	1	Plateau	1.1387	1.0999	7.7646	3	0	Median	0.994	1.0562	34.566	4	0	Median	1394600000	691970000	702630000	227930000	105570000	122370000	291020000	147340000	143680000	424000000	204110000	219890000	451650000	234950000	216700000	5971	4193	5640	37273;37274;37275;37276;37277;37278;37279;37280;37281;37282;37283;37284;37285	50977;50978;50979;50980;50981;50982;50983;50984;50985;50986;50987;50988	50987			12	
AVTALVKNFPK	2	Acetyl (K)	1228.718	0.71795849	4193	Q96P70	IPO9	Importin-9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	75.034	64.471	2	1.0634E-09	31860	160513_QHF_FH_JSI12Kac_5	130.96	109.46			1.042	1.1979	85.262	4	1	Median	4.7267	4.028	NaN	1	1	Median	0.89392	1.0516	NaN	1	0	Median	0.51446	0.51565	NaN	1	0	Median	1.2145	1.3646	NaN	1	0	Median	17940000	10215000	7724400	1615400	309310	1306100	3521700	1733700	1787900	8415800	5749200	2666700	4386700	2423000	1963700	5972	4193	5641	37286;37287;37288;37289	50989;50990;50991;50992;50993;50994	50991	3073		6	
AVTAMGILNTIDTLLSVVEDHK	1	Unmodified	2339.2406	0.24064756	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		102.89	96.005	3;4	5.1877E-126	57450	160513_QHF_FH_JSI10Kac_6	254.4	240.29			1.1202	1.3422	4.6231	3	0	Plateau	1.7002	1.4455	NaN	1	0	Median	1.1257	1.335	0.76866	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	729470000	347770000	381690000	98141000	35893000	62248000	631330000	311880000	319450000	0	0	0	0	0	0	5973	686	5642	37290;37291;37292;37293	50995;50996;50997;50998;50999	50997			5	
AVTAMGILNTIDTLLSVVEDHK	1	Oxidation (M)	2355.2356	0.23556218	686	O95373	IPO7	Importin-7	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				102.03	92.841	3	4.1102E-22	53743	160513_QHF_FH_JSI9Kac_6	140.73	127.79			0.78854	0.64989	NaN	1	0	Median	0.78854	0.64989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15151000	9028500	6122300	15151000	9028500	6122300	0	0	0	0	0	0	0	0	0	5974	686	5642	37294	51000	51000		240	1	
AVTDSINQLITMCTQQAPGQK	1	Unmodified	2303.125	0.12496588	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		82.764	82.402	3	3.9381E-10	75122	160511_QHF_FH_JSI11i_1	114.56	111.37			0.79814	0.77452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79814	0.77452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75754000	51746000	24008000	0	0	0	0	0	0	75754000	51746000	24008000	0	0	0	5975	5616	5643	37295;37296	51001;51002	51001			2	
AVTDTHENGDLGTASETPLDDGASK	1	Unmodified	2500.1201	0.12013431	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.606	40.961	3	4.4556E-11	36188	160511_QHF_FH_JSI9i_1	87.339	82.131			1.0075	0.9733	13.107	4	0	Median	1.0131	0.83888	NaN	1	0	Median	0.81686	0.9552	NaN	1	0	Median	1.0019	0.99174	NaN	1	0	Median	1.1154	1.1535	NaN	1	0	Median	339510000	168340000	171170000	76303000	36014000	40288000	87778000	45969000	41810000	102160000	52596000	49566000	73270000	33763000	39507000	5976	4870	5644	37297;37298;37299;37300	51003;51004;51005;51006;51007;51008;51009;51010	51010			8	
AVTELNEPLSNEDR	0	Unmodified	1585.7584	0.75837933	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	46.156	41.791	2	5.3488E-81	37350	160511_QHF_FH_JSI10i_1	245.58	232.23			0.93422	0.92225	9.0699	7	0	Median	1.0337	0.83959	NaN	1	0	Median	0.79683	0.93572	2.0513	2	0	Median	0.95485	0.95421	5.4251	2	0	Median	0.91823	0.99346	16.331	2	0	Median	1322900000	714230000	608680000	173870000	88842000	85028000	368500000	213340000	155160000	401400000	206350000	195050000	379130000	205690000	173440000	5977	2224	5645	37301;37302;37303;37304;37305;37306;37307	51011;51012;51013;51014;51015;51016;51017;51018;51019;51020;51021;51022	51018			12	
AVTELNEPLSNEDRNLLSVAYK	1	Unmodified	2474.2653	0.26528241	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							1	2	4	4	78.461	78.021	2;3	3.1387E-23	68685	160511_QHF_FH_JSI9i_2	167.16	155.7			0.99208	1.115	6.068	10	1	Linear	1.2513	1.0615	NaN	1	0	Median	0.86198	1.0355	2.1733	2	0	Median	1.0338	1.1608	8.4532	3	0	Plateau	0.93089	0.9773	4.8864	4	1	Median	3471600000	1777200000	1694400000	373880000	178630000	195250000	610640000	361540000	249100000	1172300000	594520000	577760000	1314800000	642550000	672250000	5978	2224	5646	37308;37309;37310;37311;37312;37313;37314;37315;37316;37317;37318	51023;51024;51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051	51037			29	
AVTEMNGR	0	Oxidation (M)	892.40727	0.40726539	1009;2385;4688	Q13310;P11940;Q4VXU2;Q9H361	PABPC4;PABPC1;PABPC1L;PABPC3	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3	no	no	0	0	1	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	4.7919	4.4779	2	0.014801	2358	160511_QHF_FH_JSI11i_1	55.676	24.387			0.87291	0.86815	10.584	4	0	Median	1.0877	0.90102	NaN	1	0	Median	0.89563	1.0388	NaN	1	0	Median	0.85077	0.82415	NaN	1	0	Median	0.78993	0.83647	NaN	1	0	Median	661290000	340870000	320420000	94509000	43234000	51275000	199040000	94067000	104970000	161880000	85758000	76126000	205860000	117810000	88046000	5979	2385;1009;4688	5647	37319;37320;37321;37322	51052;51053	51053		593	2	
AVTEMNGR	0	Unmodified	876.41235	0.41235077	1009;2385;4688	Q13310;P11940;Q4VXU2;Q9H361	PABPC4;PABPC1;PABPC1L;PABPC3	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.64	5	3					3			2	3	3	3	9.7568	6.9582	2	2.544E-06	6510	160511_QHF_FH_JSI12i_1	143	102.9			1.0153	1.0324	10.295	10	3	Median	1.2451	1.023	8.2536	2	1	Median	0.91371	1.0838	6.9877	2	1	Median	1.0609	1.0332	7.4734	3	0	Median	0.821	0.89577	16.132	3	1	Plateau	5030000000	2698500000	2331500000	992530000	496840000	495690000	1143000000	613120000	529890000	1489300000	756990000	732280000	1405100000	831530000	573620000	5980	2385;1009;4688	5647	37323;37324;37325;37326;37327;37328;37329;37330;37331;37332;37333	51054;51055;51056;51057;51058;51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069	51058			16	
AVTEQGAELSNEER	0	Unmodified	1531.7114	0.71142914	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.4	8	4	3		3	3	2			4	7	5	7	25.954	22.51	2;3	1.1004E-116	19754	160511_QHF_FH_JSI10i_1	316.11	296.35			0.97665	1.0393	22.264	23	4	Median	1.0851	0.90104	31.62	4	2	Linear	0.82907	0.99705	21.301	7	2	Median	0.9773	0.97215	15.664	5	0	Median	0.98536	1.066	13.493	7	0	Median	11145000000	5220600000	5924400000	2377500000	900370000	1477100000	2822100000	1575000000	1247100000	2551800000	1306600000	1245200000	3393700000	1438700000	1955000000	5981	1288	5648	37334;37335;37336;37337;37338;37339;37340;37341;37342;37343;37344;37345;37346;37347;37348;37349;37350;37351;37352;37353;37354;37355;37356	51070;51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087;51088;51089;51090;51091;51092;51093;51094;51095;51096;51097;51098;51099;51100;51101;51102;51103;51104;51105;51106;51107;51108;51109;51110	51086			41	
AVTEQGAELSNEERNLLSVAYK	1	Unmodified	2420.2183	0.21833222	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	77.741	77.145	3	5.8335E-08	66959	160511_QHF_FH_JSI12i_3	91.725	84.531			0.74429	0.72162	45.986	6	4	Median	0.74851	0.6345	NaN	1	1	Median	1.0949	1.3657	NaN	1	0	Median	0.49613	0.48619	53.695	2	2	Median	0.75456	0.7978	12.04	2	1	Median	533060000	286570000	246490000	60935000	39026000	21909000	103520000	40405000	63117000	80422000	49009000	31413000	288180000	158130000	130050000	5982	1288	5649	37357;37358;37359;37360;37361;37362	51111;51112;51113;51114;51115;51116	51116			6	
AVTEQGHELSNEER	0	Unmodified	1597.7332	0.73322721	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.95	11	8	8				5	6	1	9	11	9	10	15.358	12.539	2;3	1.978E-119	10198	160511_QHF_FH_JSI12i_3	295.62	275.48			1.0542	1.0643	10.213	33	1	Median	1.3275	1.1023	9.844	8	0	Median	0.83596	1.0144	7.7814	9	0	Median	1.0726	1.0508	9.8918	7	0	Median	1.0542	1.1427	11.664	9	1	Median	19617000000	9739600000	9877400000	3158000000	1453800000	1704200000	4153400000	2230000000	1923400000	5854900000	2837400000	3017500000	6450700000	3218400000	3232300000	5983	1384	5650	37363;37364;37365;37366;37367;37368;37369;37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381;37382;37383;37384;37385;37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400;37401	51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148;51149;51150;51151;51152;51153;51154;51155;51156;51157;51158;51159;51160;51161;51162;51163;51164;51165;51166;51167;51168;51169;51170;51171;51172;51173;51174;51175;51176;51177;51178	51176			62	
AVTEQGHELSNEERNLLSVAYK	1	Unmodified	2486.2401	0.24013029	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.282	63.992	3	9.9223E-05	55144	160511_QHF_FH_JSI12i_3	57.496	45.193			0.50834	0.52681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50834	0.52681	NaN	1	1	Median	38919000	29859000	9060400	0	0	0	0	0	0	0	0	0	38919000	29859000	9060400	5984	1384	5651	37402	51179	51179			1	
AVTFIDLTTLSGDDTSSNIQR	0	Unmodified	2253.1125	0.11247016	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	1	3	91.978	91.813	2;3	1.1645E-43	83565	160511_QHF_FH_JSI12i_1	163.27	141.4			1.0409	1.1833	25.363	3	1	Median	NaN	NaN	NaN	0	0	Median	0.9425	1.0584	15.777	2	0	Median	NaN	NaN	NaN	0	0	Median	1.536	1.5703	NaN	1	1	Median	85917000	41500000	44417000	0	0	0	54511000	28681000	25830000	0	0	0	31407000	12819000	18588000	5985	5555	5652	37403;37404;37405;37406;37407;37408	51180;51181;51182;51183;51184;51185	51182			6	
AVTGTHTLALAAK	1	Unmodified	1252.7139	0.71393574	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.68		1	8						3	3	3	3	3	32.335	29.469	2;3	7.9306E-11	25148	160511_QHF_FH_JSI11i_3	117.2	94.559			1.1319	1.0727	9.0455	11	0	Median	1.3362	1.0715	2.4782	3	0	Plateau	1.0202	1.19	7.6536	2	0	Median	1.116	1.0294	6.1087	3	0	Median	1.2436	1.2603	10.606	3	0	Plateau	1447700000	696790000	750890000	169920000	75747000	94174000	254090000	141250000	112830000	459200000	225290000	233900000	564480000	254490000	309980000	5986	1682	5653	37409;37410;37411;37412;37413;37414;37415;37416;37417;37418;37419;37420	51186;51187;51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199;51200;51201	51186			16	
AVTGYNDPETGNIISLFQAMNK	1	Unmodified	2382.1526	0.15256084	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		101.6	101.55	3	6.4046E-28	92234	160511_QHF_FH_JSI11i_1	192.25	183.86			0.79465	0.86675	9.1408	2	1	Median	NaN	NaN	NaN	0	0	Median	0.68131	0.8125	NaN	1	0	Median	0.92685	0.92462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	357940000	192310000	165620000	0	0	0	225970000	134690000	91284000	131970000	57626000	74341000	0	0	0	5987	1085	5654	37421;37422	51202;51203	51202			2	
AVTGYNDPETGNIISLFQAMNK	1	Oxidation (M)	2398.1475	0.14747546	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	93.507	93.484	3	5.0415E-06	81013	160511_QHF_FH_JSI12i_3	85.231	76.841			0.64852	0.65525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64852	0.65525	NaN	1	1	Median	26246000	11548000	14697000	0	0	0	0	0	0	0	0	0	26246000	11548000	14697000	5988	1085	5654	37423	51204	51204		730	1	
AVTGYRDPYSGSTISLFQAMQK	1	Unmodified	2419.1842	0.18419532	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		81.909	81.043	3	1.0659E-05	66730	160511_QHF_FH_JSI9i_3	64.203	56.399			0.62022	0.7145	17.969	3	1	Plateau	0.8047	0.6758	NaN	1	0	Median	0.60672	0.7145	NaN	1	0	Median	0.99089	0.94502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50437000	23570000	26866000	15223000	7834600	7388300	17142000	10849000	6292400	18072000	4886500	13186000	0	0	0	5989	2636	5655	37424;37425;37426	51205;51206;51207;51208;51209	51209			5	
AVTGYRDPYTEQTISLFQAMK	1	Oxidation (M)	2434.1839	0.18386096	2636	Q15149	PLEC	Plectin	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	73.214	72.707	3	1.1705E-12	64787	160511_QHF_FH_JSI11i_3	120.4	105.79			0.98659	1.0018	8.901	4	2	Median	NaN	NaN	NaN	0	0	Median	0.95408	1.0871	NaN	1	0	Median	1.0202	0.94051	NaN	1	0	Median	0.98285	0.98562	11.237	2	2	Median	155370000	82506000	72864000	0	0	0	13870000	7727200	6143200	35260000	17609000	17651000	106240000	57170000	49070000	5990	2636	5656	37427;37428;37429;37430	51210;51211;51212;51213;51214	51210		2057	5	
AVTGYRDPYTEQTISLFQAMK	1	Unmodified	2418.1889	0.18894634	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	3	2	3	86.754	86.334	3;4	1.5522E-24	76982	160511_QHF_FH_JSI11i_3	184.7	169.77			1.2073	1.1561	19.433	9	8	Median	1.0774	0.91009	NaN	1	1	Median	1.265	1.4601	25.459	3	3	Median	1.2904	1.2282	8.5491	2	2	Median	1.1903	1.2126	14.029	3	2	Plateau	1582000000	703870000	878110000	52911000	21248000	31663000	191140000	92713000	98423000	462270000	198940000	263330000	875670000	390970000	484700000	5991	2636	5656	37431;37432;37433;37434;37435;37436;37437;37438;37439	51215;51216;51217;51218;51219;51220;51221;51222;51223;51224	51216			9	
AVTGYRDPYTGQSVSLFQALK	1	Unmodified	2300.1801	0.18009622	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		80.867	79.866	3	1.7989E-27	65780	160511_QHF_FH_JSI9i_3	192.98	169.3			1.0259	1.0045	9.3943	4	2	Linear	1.0407	0.83162	4.9986	2	2	Median	0.82171	0.94676	NaN	1	0	Median	1.0476	0.98937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	583520000	297120000	286400000	294720000	145370000	149360000	125630000	71502000	54128000	163160000	80249000	82914000	0	0	0	5992	2636	5657	37440;37441;37442;37443	51225;51226;51227;51228;51229	51229			5	
AVTGYTDPYTGQQISLFQAMQK	1	Unmodified	2446.1839	0.18386096	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	3	1	90.831	90.433	2;3	8.274E-18	82506	160511_QHF_FH_JSI11i_1	140.1	128.13			0.88955	0.86192	16.32	5	2	Median	1.0358	0.8555	NaN	1	0	Median	0.87161	1.0223	NaN	1	0	Median	0.80024	0.78235	13.698	2	1	Median	1.0437	1.0699	NaN	1	1	Median	387920000	201710000	186200000	46331000	20345000	25986000	107570000	57299000	50271000	136620000	72047000	64573000	97396000	52024000	45372000	5993	1898	5658	37444;37445;37446;37447;37448;37449	51230;51231;51232;51233;51234	51232			5	
AVTHLNNVK	1	Unmodified	994.55598	0.55597854	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	10.217	9.9047	2;3	1.2546E-06	7150	160511_QHF_FH_JSI12i_3	133.55	109.58			0.69877	0.74775	18.191	8	7	Median	0.76943	0.62764	21.224	2	2	Median	0.69877	0.80407	4.9199	2	2	Median	0.89197	0.84678	14.052	2	2	Median	0.60831	0.6174	5.1274	2	1	Median	1357300000	848300000	509030000	129810000	69386000	60427000	216020000	146380000	69639000	344660000	183630000	161030000	666840000	448910000	217930000	5994	3788	5659	37450;37451;37452;37453;37454;37455;37456;37457	51235;51236;51237;51238;51239;51240;51241;51242;51243	51241			9	
AVTHQVK	1	Unmodified	781.44464	0.44463717	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.16		3	2						2	2	1	2	2	3.6206	1.1575	2	0.013756	652	160511_QHF_FH_JSI12i_3	69.176	35.437			0.8634	0.87602	69.071	7	2	Median	1.0687	0.93121	8.6409	2	0	Median	0.8634	1.0549	NaN	1	0	Median	0.64537	0.62529	31.746	2	0	Median	1.456	1.4705	141.86	2	2	Median	436040000	216080000	219970000	172900000	78055000	94842000	124860000	73370000	51492000	16103000	10036000	6066900	122180000	54615000	67567000	5995	3754	5660	37458;37459;37460;37461;37462;37463;37464	51244;51245;51246;51247;51248;51249;51250	51249			7	
AVTHQVKFGQQNPR	1	Acetyl (K)	1650.859	0.85903685	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		31.616	22.874	3	0.0004254	13116	160513_QHF_FH_JSI10Kac_6	71.879	59.496			0.62649	0.68214	114.57	2	0	Median	NaN	NaN	NaN	0	0	Median	1.277	1.5336	NaN	1	0	Median	0.30735	0.30341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13639000	7820000	5819100	0	0	0	6832200	2893700	3938600	6806900	4926400	1880600	0	0	0	5996	3754	5661	37465;37466	51251;51252	51252	2929		2	
AVTHTSPEDVSFAESR	0	Unmodified	1731.8064	0.80639216	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.43		7	5					2		3	3	5	3	35.265	32.848	2;3	1.1626E-21	28829	160511_QHF_FH_JSI10i_2	134.2	125.01			0.97056	0.99959	13.985	10	3	Median	1.3309	1.1036	13.318	2	1	Median	0.61853	0.76205	NaN	1	0	Median	1.0327	1.0102	9.9027	4	1	Median	0.82799	0.83418	8.9079	3	1	Plateau	666270000	343550000	322720000	74997000	34340000	40657000	82205000	57619000	24586000	264310000	127650000	136660000	244750000	123940000	120820000	5997	4424	5662	37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477;37478;37479;37480	51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270	51266			17	
AVTHTSPEDVSFAESRR	0	Unmodified	1887.9075	0.90750318	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			28.507	27.153	3;4	0.008921	22024	160511_QHF_FH_JSI9i_3	37.583	30.352			1.4007	1.1381	6.099	3	0	Median	1.4416	1.1901	6.3205	2	0	Median	0.94705	1.1076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78852000	38621000	40230000	51428000	22849000	28579000	27424000	15772000	11652000	0	0	0	0	0	0	5998	4424	5663	37481;37482;37483	51271;51272;51273;51274;51275	51274			5	
AVTIFIR	0	Unmodified	818.50142	0.50142377	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.27		4	4					7	7	6	6	4	6	60.034	53.485	2	3.1549E-57	27855	160513_QHF_FH_JSI12Kac_6	228.36	106.49			1.0797	0.97477	22.661	21	2	Median	1.1596	0.98917	4.938	6	1	Median	0.8531	1.0109	25.308	5	0	Median	1.0687	1.0233	13.068	4	0	Median	0.86321	0.90485	36.836	6	1	Median	6578300000	3143900000	3434400000	1362400000	567870000	794550000	1880300000	916290000	964050000	1441400000	659350000	782060000	1894100000	1000400000	893770000	5999	1630	5664	37484;37485;37486;37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499;37500;37501;37502;37503;37504;37505	51276;51277;51278;51279;51280;51281;51282;51283;51284;51285;51286;51287;51288;51289;51290;51291;51292;51293;51294;51295;51296;51297;51298;51299;51300;51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311;51312;51313;51314;51315;51316;51317;51318	51312			43	
AVTIHDTEK	1	Unmodified	1012.5189	0.51892433	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	10.289	9.8016	3	0.041615	7330	160511_QHF_FH_JSI11i_2	42.395	23.955			0.96308	0.98139	11.069	4	0	Median	1.1073	0.9472	NaN	1	0	Median	0.8089	1.0075	NaN	1	0	Median	1.2091	1.202	NaN	1	0	Median	0.83763	0.95593	NaN	1	0	Median	323040000	168230000	154810000	66183000	31966000	34216000	103170000	66706000	36463000	100400000	46734000	53670000	53282000	22824000	30458000	6000	5	5665	37506;37507;37508;37509	51319	51319			0	
AVTITLK	1	Unmodified	744.47454	0.47454032	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	39.51	38.71	2	0.049013	32355	160511_QHF_FH_JSI10i_3	43.066	3.4033			1.074	0.97099	7.8408	4	0	Median	1.2132	0.9782	NaN	1	0	Median	0.801	0.93527	NaN	1	0	Median	1.0203	0.96383	NaN	1	0	Median	1.1306	1.1167	NaN	1	0	Median	474920000	243690000	231230000	57590000	19913000	37676000	63686000	27631000	36055000	132130000	68232000	63898000	221510000	127910000	93603000	6001	1830	5666	37510;37511;37512;37513	51320	51320			1	
AVTITLK	1	Acetyl (Protein N-term)	786.48511	0.485105	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	1	0	0	By matching	By MS/MS		By MS/MS	6.33	5.34	3			1	2					1	4		1	61.485	60.399	1;2	0.015483	54852	160511_QHF_FH_JSI12i_1	40.103	17.084			1.3002	1.0412	NaN	1	0	Median	1.3002	1.0412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40321000	17074000	23247000	40321000	17074000	23247000	0	0	0	0	0	0	0	0	0	6002	1830	5666	37514;37515;37516;37517;37518;37519	51321;51322;51323;51324;51325	51321			5	
AVTKAQK	2	Acetyl (K)	786.45995	0.45995289	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.687					1	3	2				2	2	2	8.0545	0.29533	2	6.495E-05	2968	160513_QHF_FH_JSI12Kac_3	127.12	37.822			0.79964	0.8002	75.611	6	0	Median	NaN	NaN	NaN	0	0	Median	2.6705	3.0822	5.0938	2	0	Median	0.79964	0.78148	1.8019	2	0	Median	0.63052	0.679	24.772	2	0	Median	668460000	254620000	413850000	0	0	0	347480000	71396000	276080000	97725000	52626000	45099000	223260000	130600000	92664000	6003	1235;1902	5667	37520;37521;37522;37523;37524;37525	51326;51327;51328;51329;51330;51331;51332	51329	1114;1115		7	
AVTKAQKK	3	Acetyl (K)	914.55492	0.5549159	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.653							2	8	5	3	5	2	5	5.767	-2.7388	2;3	0.0049819	1751	160513_QHF_FH_JSI10Kac_5	82.452	24.594			1.2531	1.1341	71.801	14	0	Median	1.9726	1.6512	20.53	2	0	Median	3.2009	3.6995	9.7519	5	0	Median	0.83132	0.8236	12.645	2	0	Median	0.75057	0.82312	5.5474	5	0	Median	550780000	190060000	360720000	87506000	27876000	59630000	263220000	59724000	203500000	68892000	30629000	38262000	131160000	71825000	59335000	6004	1235;1902	5668	37526;37527;37528;37529;37530;37531;37532;37533;37534;37535;37536;37537;37538;37539;37540	51333;51334;51335;51336;51337;51338;51339;51340;51341;51342;51343;51344;51345;51346	51342	1114;1115		14	
AVTKAQKK	3	2 Acetyl (K)	956.56548	0.56548059	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	15.796	8.5254	2	0.017312	6517	160513_QHF_FH_JSI12Kac_3	91.853	22.255			0.96968	0.99095	74.821	3	0	Median	NaN	NaN	NaN	0	0	Median	2.9008	3.4479	NaN	1	0	Median	0.96968	0.99095	NaN	1	0	Median	0.85679	0.9028	NaN	1	0	Median	31865000	12341000	19524000	0	0	0	14467000	3892300	10574000	6073300	2991800	3081500	11325000	5456400	5868200	6005	1235;1902	5668	37541;37542;37543	51347;51348;51349	51347	1114;1115		3	
AVTKDEDEWK	2	Unmodified	1219.5721	0.57208211	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	1	4	17.108	16.649	2;3	3.9416E-05	13238	160511_QHF_FH_JSI12i_3	110.39	87.647			0.91144	1.0048	80.194	6	2	Median	0.21831	0.19107	NaN	1	0	Median	1.576	1.9486	NaN	1	1	Median	1.3538	1.3632	NaN	1	0	Median	0.8152	0.94606	17.358	3	1	Median	202820000	103170000	99645000	18619000	14771000	3848000	47645000	20575000	27071000	24543000	9307600	15235000	112010000	58517000	53491000	6006	5383	5669	37544;37545;37546;37547;37548;37549;37550;37551	51350;51351;51352;51353;51354;51355;51356;51357	51356			8	
AVTKVQK	2	Acetyl (K)	814.49125	0.49125301	2915	Q5QNW6	HIST2H2BF	Histone H2B type 2-F	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.687					1	3	2				2	2	2	15.243	7.8701	2	0.001608	6608	160513_QHF_FH_JSI11Kac_4	111.01	19.101			0.79123	0.82899	67.018	6	0	Median	NaN	NaN	NaN	0	0	Median	2.3026	2.7272	7.3274	2	0	Median	0.7872	0.78038	17.103	2	0	Median	0.666	0.73087	9.2563	2	0	Median	343980000	141580000	202400000	0	0	0	142410000	39237000	103180000	66202000	34125000	32076000	135370000	68222000	67149000	6007	2915	5670	37552;37553;37554;37555;37556;37557	51358;51359;51360;51361;51362;51363;51364	51360	2713		7	
AVTKYTSSK	2	Acetyl (K)	1025.5393	0.53932542	1235;1902;2915	Q16778;P23527;Q8N257;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST3H2BB;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 2-F	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				1	2	2	20.865	12.975	2	0.00016188	8423	160513_QHF_FH_JSI10Kac_4	111.61	84.082			0.50317	0.53215	65.737	5	0	Median	NaN	NaN	NaN	0	0	Median	1.51	1.803	NaN	1	0	Median	0.37792	0.37058	19.361	2	0	Median	0.51572	0.55332	5.5189	2	0	Median	108150000	66997000	41154000	0	0	0	19062000	5326000	13736000	69720000	49266000	20454000	19368000	12405000	6963500	6008	1235;1902;2915	5671	37558;37559;37560;37561;37562	51365;51366;51367;51368;51369;51370	51365	1116		6	
AVTLDPNFLDAYINLGNVLK	1	Unmodified	2189.1732	0.17321992	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		102.9	102.82	3	0.0033658	90388	160511_QHF_FH_JSI11i_2	40.381	34.107			0.9086	1.0036	0.060933	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8198	1.0032	NaN	1	0	Median	1.007	1.0041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75805000	36013000	39792000	0	0	0	23477000	12894000	10583000	52328000	23119000	29209000	0	0	0	6009	274	5672	37563;37564	51371	51371			1	
AVTLHDQGTAQWADLSSQFYLR	0	Unmodified	2506.2241	0.2240863	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	88.22	87.578	3	2.0225E-13	75641	160511_QHF_FH_JSI12i_2	117.48	109.09			0.86049	1.0374	11.459	3	1	Median	1.3089	1.1477	NaN	1	1	Median	0.86049	1.0374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84352	0.91311	NaN	1	0	Median	91151000	48839000	42312000	17469000	7595100	9874100	42368000	21604000	20763000	0	0	0	31314000	19640000	11675000	6010	1208	5673	37565;37566;37567	51372;51373;51374;51375;51376	51372			5	
AVTLHDQGTAQWADLSSQFYLREEDIGK	1	Unmodified	3177.5367	0.53670624	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		2	4							1		3	2	87.126	86.908	3;4	7.5299E-33	75278	160511_QHF_FH_JSI12i_3	153.97	151.83			1.0624	0.96584	21.161	6	4	Median	1.0234	0.85497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2051	1.1405	2.9388	3	3	Median	0.74355	0.75374	12.614	2	0	Median	815620000	331360000	484260000	67985000	21760000	46225000	0	0	0	282890000	86108000	196790000	464740000	223490000	241240000	6011	1208	5674	37568;37569;37570;37571;37572;37573	51377;51378;51379;51380;51381;51382;51383;51384;51385;51386;51387	51382			11	
AVTLSALIYCLR	0	Unmodified	1378.7643	0.76425675	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.067	83.347	2	0.0045146	47227	160513_QHF_FH_JSI10Kac_6	66.19	39.404			0.45838	0.55028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45838	0.55028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95371000	60264000	35106000	0	0	0	95371000	60264000	35106000	0	0	0	0	0	0	6012	211	5675	37574	51388	51388			1	
AVTLVGSK	1	Unmodified	773.4647	0.46470391	5821				yes	yes	0	0	0	0		By MS/MS			1	0	1										1			24.612	24.319	2	0.054003	21150	160511_QHF_FH_JSI10i_1	36.395	6.0477	+		0.7858	0.93486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7858	0.93486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	429660000	294130000	135530000	0	0	0	429660000	294130000	135530000	0	0	0	0	0	0	6013	5821	5676	37575	51389	51389			1	
AVTNHSVYCSTK	1	Unmodified	1365.6347	0.63469914	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								3	1	1	10.571	10.278	2;3	1.6795E-06	7889	160511_QHF_FH_JSI10i_3	124.07	109.81			1.4455	1.5558	50.231	4	2	Median	NaN	NaN	NaN	0	0	Median	1.8646	2.167	22.196	2	2	Median	0.84951	0.78545	NaN	1	0	Median	1.3063	1.3067	NaN	1	0	Median	142970000	56775000	86195000	0	0	0	52372000	17329000	35043000	28641000	13264000	15376000	61956000	26181000	35775000	6014	3278	5677	37576;37577;37578;37579;37580	51390;51391;51392;51393;51394;51395	51391			6	
AVTPAPPIK	1	Unmodified	892.5382	0.53820321	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.232	30.629	2	0.00061977	27674	160511_QHF_FH_JSI12i_1	77.282	63.611			1.0087	0.99151	4.3843	4	0	Median	1.1942	0.97578	NaN	1	0	Median	0.77797	0.92042	NaN	1	0	Median	1.0243	1.0075	NaN	1	0	Median	0.99338	1.0124	NaN	1	0	Median	427400000	216940000	210460000	104020000	48219000	55798000	94087000	53376000	40711000	116580000	60032000	56551000	112720000	55313000	57402000	6015	653	5678	37581;37582;37583;37584	51396;51397;51398;51399;51400;51401;51402	51398			7	
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	1	Unmodified	2793.5463	0.54627206	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	101.81	101.73	3	2.3765E-09	92317	160511_QHF_FH_JSI12i_1	57.95	51.374			0.78418	0.76747	4.7934	3	0	Median	NaN	NaN	NaN	0	0	Median	0.62329	0.73021	NaN	1	0	Median	0.80661	0.76747	NaN	1	0	Median	0.78418	0.80366	NaN	1	0	Median	488080000	252260000	235810000	0	0	0	159830000	76109000	83724000	154530000	84959000	69574000	173710000	91197000	82513000	6016	5315	5679	37585;37586;37587	51403;51404	51404			2	
AVTPSSEAK	1	Unmodified	888.45526	0.45526144	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	7	6	2					2					1	2	1	8.1007	4.4059	2	0.0036707	5092	160511_QHF_FH_JSI10i_1	69.825	18.859			1.0181	1.1067	7.2283	4	1	Median	NaN	NaN	NaN	0	0	Median	0.98421	1.1511	NaN	1	1	Median	1.073	1.0338	8.1124	2	0	Median	1.0306	1.1187	NaN	1	0	Median	179370000	85040000	94330000	0	0	0	92079000	41105000	50974000	84758000	42360000	42397000	2532800	1574800	958090	6017	4302	5680	37588;37589;37590;37591	51405;51406;51407	51407			3	
AVTPVPTK	1	Unmodified	811.48035	0.48035398	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	20.283	17.504	2	0.0030848	14748	160511_QHF_FH_JSI11i_1	75.213	39.027			0.84309	0.85229	6.7542	6	0	Median	1.11	0.92584	NaN	1	0	Median	0.72422	0.83727	NaN	1	0	Median	0.85027	0.82645	4.4713	2	0	Median	0.83876	0.90428	8.4899	2	0	Median	723450000	397560000	325880000	144050000	63366000	80689000	163940000	92787000	71150000	207060000	122950000	84112000	208400000	118470000	89931000	6018	3132	5681	37592;37593;37594;37595;37596;37597	51408;51409;51410;51411;51412;51413;51414;51415	51408			8	
AVTQALNR	0	Unmodified	871.48756	0.48756462	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.5		5	3				1	2		2	2	4	3	15.073	12.523	2	3.8035E-05	10812	160511_QHF_FH_JSI11i_3	137.18	90.753			0.95881	0.95585	10.641	4	1	Median	NaN	NaN	NaN	0	0	Median	0.95779	1.0868	NaN	1	0	Median	0.91547	0.88369	6.3492	2	1	Median	0.95982	0.9885	NaN	1	0	Median	703530000	378790000	324740000	0	0	0	100600000	50245000	50358000	283820000	156640000	127180000	319110000	171900000	147210000	6019	5616	5682	37598;37599;37600;37601;37602;37603;37604;37605;37606;37607;37608	51416;51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429	51417			14	
AVTSPGQALSTVVK	1	Unmodified	1356.7613	0.76127986	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.67	0.471	1	2								1			2	58.128	57.127	2	0.00072367	48892	160511_QHF_FH_JSI12i_2	88.441	63.586			1.139	1.1652	23.655	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.139	1.1652	23.655	2	2	Median	33842000	17932000	15910000	0	0	0	0	0	0	0	0	0	33842000	17932000	15910000	6020	3133	5683	37609;37610;37611	51430;51431;51432	51430			3	
AVTTNQWHR	0	Unmodified	1111.5523	0.55229014	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			14.313	13.468	3	0.0039044	10741	160511_QHF_FH_JSI10i_3	40.239	8.848			0.96877	1.137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96877	1.137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56944000	27588000	29356000	0	0	0	56944000	27588000	29356000	0	0	0	0	0	0	6021	5755	5684	37612	51433	51433			1	
AVTTPGK	1	Unmodified	672.38064	0.38063993	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.39	3	3				2	2	1	1	2	3	4	3	8.6406	4.6027	2	0.0099713	4822	160511_QHF_FH_JSI9i_1	76.847	19.383			1.0104	1.1122	28.669	12	1	Median	1.098	0.93522	31.133	2	0	Median	0.96754	1.1638	45.118	3	0	Median	1.2607	1.1253	6.5761	4	1	Linear	0.7907	0.84894	22.906	3	0	Median	7741700000	3615100000	4126600000	2548500000	1143600000	1404900000	2633000000	1373900000	1259100000	2305700000	964210000	1341500000	254410000	133350000	121060000	6022	1154	5685	37613;37614;37615;37616;37617;37618;37619;37620;37621;37622;37623;37624	51434;51435;51436;51437;51438;51439;51440;51441;51442;51443	51440			10	
AVTTPGKK	2	Unmodified	800.4756	0.47560295	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.31		1	4					3	4	3	3	3	3	5.8527	0.86263	2	0.00036725	3070	160511_QHF_FH_JSI11i_3	110.81	29.024			0.95613	1.0297	20.392	12	2	Median	1.6176	1.3783	28.119	3	1	Plateau	0.90753	1.0271	10.82	3	0	Median	0.79262	0.74743	31.236	3	0	Plateau	0.94678	1.0323	14.745	3	1	Median	13680000000	7258300000	6421300000	3882000000	1451300000	2430600000	2442200000	1277300000	1164800000	2147700000	1296400000	851330000	5207800000	3233300000	1974500000	6023	1154	5686	37625;37626;37627;37628;37629;37630;37631;37632;37633;37634;37635;37636	51444;51445;51446;51447;51448;51449;51450;51451;51452;51453;51454;51455	51444			12	
AVTTQHLLSIISLANTLMSMTNATFIGDHMK	1	Unmodified	3358.7087	0.70873907	5625	Q9Y4E6	WDR7	WD repeat-containing protein 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	100.3	91.866	4	1.0082E-66	52340	160513_QHF_FH_JSI11Kac_6	177.55	149.15			0.90162	0.87462	33.519	4	1	Median	1.0312	0.87522	NaN	1	0	Median	0.89447	1.0533	NaN	1	1	Median	0.90882	0.87403	NaN	1	0	Median	0.46248	0.48721	NaN	1	0	Median	502560000	315490000	187070000	60845000	34233000	26612000	245230000	174830000	70400000	121840000	61075000	60764000	74641000	45348000	29293000	6024	5625	5687	37637;37638;37639;37640	51456;51457;51458	51456			2	
AVTVMMDPNSTQR	0	Unmodified	1448.6752	0.67518375	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	40.908	40.01	2	1.0082E-06	35484	160511_QHF_FH_JSI9i_1	127.51	101.58			1.7265	1.6975	46.65	5	3	Median	1.7265	1.4355	NaN	1	0	Median	0.51591	0.61355	NaN	1	0	Median	1.8814	1.8532	NaN	1	1	Median	1.6222	1.7664	5.6265	2	2	Median	471470000	184860000	286610000	115660000	46073000	69585000	15404000	8646100	6758400	180150000	64765000	115380000	160260000	65377000	94878000	6025	4831	5688	37641;37642;37643;37644;37645	51459;51460;51461;51462;51463	51463			5	
AVTVYDK	1	Unmodified	794.41742	0.41741937	4408	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.931	15.66	2	0.017769	13381	160511_QHF_FH_JSI12i_1	60.972	27.422			0.8969	1.0415	33.374	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8969	1.0415	NaN	1	0	Median	1.628	1.5976	NaN	1	0	Median	0.77967	0.82767	NaN	1	0	Median	565930000	295810000	270120000	0	0	0	168530000	99179000	69347000	190400000	80625000	109780000	207000000	116000000	90994000	6026	4408	5689	37646;37647;37648	51464;51465	51464			2	
AVTVYDKPASFFK	2	Acetyl (K)	1513.7817	0.78168095	4408	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.35	70.799	2	5.794E-07	37505	160513_QHF_FH_JSI11Kac_5	140.3	90.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2010600	2010600	0	0	0	0	0	0	0	2010600	2010600	0	0	0	0	6027	4408	5690	37649	51466	51466	3153		1	
AVTVYTNYPFPGETFNR	0	Unmodified	1974.9476	0.94757708	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	78.015	77.185	2	1.1103E-40	68050	160511_QHF_FH_JSI9i_2	167.44	143.69			1.1504	1.1598	17.106	4	3	Median	1.4392	1.2357	NaN	1	0	Median	1.3209	1.4665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94574	1.0365	6.9294	2	2	Median	104930000	52003000	52931000	20158000	5813000	14345000	19792000	6798800	12994000	0	0	0	64984000	39391000	25593000	6028	1435	5691	37650;37651;37652;37653;37654;37655;37656	51467;51468;51469;51470;51471;51472;51473	51472			6	
AVVAALMK	1	Unmodified	801.47825	0.47824549	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.47		2	5					1	4	3	3	2	4	45.148	40.38	1;2	0.00058835	32727	160511_QHF_FH_JSI9i_3	103.29	65.64			0.93522	1.0518	16.932	11	0	Median	1.2134	1.011	5.9016	2	0	Median	0.92616	1.0567	6.0052	3	0	Median	0.83227	0.79476	20.527	2	0	Median	0.98315	1.0444	18.939	4	0	Median	1579000000	802100000	776900000	205030000	93501000	111530000	291650000	156870000	134780000	403270000	201970000	201300000	679050000	349760000	329280000	6029	899	5692	37657;37658;37659;37660;37661;37662;37663;37664;37665;37666;37667;37668	51474;51475;51476;51477;51478;51479;51480;51481;51482;51483;51484;51485;51486	51479			12	
AVVAQAVR	0	Unmodified	812.48684	0.48683634	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	14.88	14.029	2	0.013403	11147	160511_QHF_FH_JSI12i_2	61.494	29.024			0.34893	0.3756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34893	0.3756	NaN	1	1	Median	32160000	22371000	9789000	0	0	0	0	0	0	0	0	0	32160000	22371000	9789000	6030	623	5693	37669	51487	51487			1	
AVVAQHVAPPPGIVEIDSEK	1	Unmodified	2055.1001	0.10005498	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	61.284	60.631	3	2.5988E-10	52242	160511_QHF_FH_JSI12i_3	119.31	111.8			1.1229	1.0478	17.914	6	0	Median	1.0973	0.95935	NaN	1	0	Median	0.72111	0.89559	NaN	1	0	Median	1.2899	1.2339	10.525	2	0	Median	0.93652	0.97231	23.046	2	0	Median	436940000	218090000	218850000	32177000	17308000	14869000	67317000	37250000	30067000	154490000	76300000	78186000	182960000	87232000	95730000	6031	3021	5694	37670;37671;37672;37673;37674;37675	51488;51489;51490;51491;51492;51493;51494;51495	51495			5	
AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFR	0	Unmodified	4113.1436	0.14359814	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.513	92.792	4	8.3339E-100	54278	160513_QHF_FH_JSI10Kac_6	201.11	176.24			0.86917	1.0396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86917	1.0396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	563900000	288510000	275390000	0	0	0	563900000	288510000	275390000	0	0	0	0	0	0	6032	1766	5695	37676	51496	51496			1	
AVVEKPAR	1	Acetyl (K)	910.52362	0.52361577	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				2	2	2	28.005	19.88	2	0.0066196	12611	160513_QHF_FH_JSI11Kac_4	83.265	58.342			0.91966	1.0294	128.94	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0466	1.2206	9.4226	2	0	Median	4.4835	4.4077	233.33	2	1	Median	0.8271	0.89516	5.0772	2	0	Median	60320000	27727000	32594000	0	0	0	18874000	9017900	9856300	19285000	5887600	13398000	22161000	12821000	9339600	6033	398	5696	37677;37678;37679;37680;37681;37682	51497;51498;51499;51500;51501;51502	51499	205		6	
AVVGVVAGGGR	0	Unmodified	940.54541	0.54541385	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.24	6.18	4	4	4		1	4	4	4	4	7	8	7	7	28.604	22.867	2	5.0291E-46	13363	160513_QHF_FH_JSI9Kac_5	208.67	147.18			0.9672	1.0029	8.7819	28	0	Median	1.3008	1.0871	11.778	6	0	Median	0.85257	1.0108	8.8769	8	0	Median	0.98938	0.98103	3.8932	7	0	Median	0.92222	0.97948	4.5203	7	0	Median	20437000000	10080000000	10358000000	4025400000	1760100000	2265300000	5165000000	2629100000	2535900000	5869700000	2890800000	2978900000	5377200000	2799600000	2577600000	6034	2039	5697	37683;37684;37685;37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707;37708;37709;37710;37711	51503;51504;51505;51506;51507;51508;51509;51510;51511;51512;51513;51514;51515;51516;51517;51518;51519;51520;51521;51522;51523;51524;51525;51526;51527;51528;51529;51530;51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541;51542;51543;51544;51545;51546;51547;51548;51549;51550;51551;51552;51553;51554;51555;51556;51557;51558;51559;51560;51561	51514			59	
AVVGVVAGGGRIDKPILK	2	Unmodified	1748.0672	0.06723871	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			52.557	50.995	3	0.00038329	42615	160511_QHF_FH_JSI10i_3	65.716	65.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6035	2039	5698	37712	51562	51562			1	
AVVHGILMGVPVPFPIPEPDGCK	1	Unmodified	2428.2647	0.26469424	1965	P61916	NPC2	Epididymal secretory protein E1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.51	101.51	3	5.2551E-07	88206	160511_QHF_FH_JSI12i_3	72.585	58.854			0.98954	0.95049	35.883	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.797	0.73749	NaN	1	1	Median	1.2286	1.225	NaN	1	1	Median	155420000	63163000	92256000	0	0	0	0	0	0	51152000	19783000	31369000	104270000	43380000	60887000	6036	1965	5699	37713;37714	51563;51564	51564			2	
AVVISGAGK	1	Unmodified	800.4756	0.47560295	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.7	5	5	5			4	4	1		5	5	7	7	20.248	16.499	1;2	4.5526E-05	14060	160511_QHF_FH_JSI11i_2	98.523	52.153			1.078	1.0832	28.782	24	1	Median	1.1679	0.983	17.204	5	0	Median	0.8966	1.0452	8.3186	5	0	Median	1.2066	1.1674	34.178	7	0	Median	1.0264	1.0916	33.322	7	1	Median	5981900000	2612300000	3369700000	1280900000	542330000	738610000	1521800000	712000000	809840000	1669800000	625820000	1044000000	1509400000	732110000	777240000	6037	2340	5700	37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738	51565;51566;51567;51568;51569;51570;51571;51572;51573;51574;51575;51576;51577;51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588;51589;51590;51591;51592;51593;51594;51595	51588			30	
AVVIVDDR	0	Unmodified	885.49198	0.4919813	2644;1222	Q15233;P23246	NONO;SFPQ	Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.52	5.94	4	4			2	5	3	4	1	5	7	6	5	33.178	26.742	2	9.6129E-07	16129	160513_QHF_FH_JSI10Kac_4	137.18	86.213			1.1533	1.2319	18.239	21	6	Median	1.6162	1.3621	17.389	5	1	Median	0.98999	1.2095	15.717	6	2	Median	1.2461	1.2592	22.126	5	3	Median	1.0613	1.1992	14.985	5	0	Median	7957600000	3778100000	4179400000	1933900000	787050000	1146800000	2178100000	1151700000	1026400000	1963200000	850710000	1112500000	1882400000	988680000	893750000	6038	2644;1222	5701	37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755;37756;37757;37758;37759;37760;37761	51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610;51611;51612;51613;51614;51615;51616;51617;51618;51619;51620;51621	51600			26	
AVVIVDDRGR	0	Unmodified	1098.6146	0.61455605	2644;1222	Q15233;P23246	NONO;SFPQ	Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.11		3	1					1		1	2	1	1	23.399	21.017	3	2.8852E-05	18113	160511_QHF_FH_JSI9i_2	78.759	57.163			1.3811	1.6879	53.415	5	2	Median	3.1912	2.808	NaN	1	0	Median	1.1735	1.4471	21.772	2	2	Median	4.6534	4.4386	NaN	1	0	Median	1.2508	1.3819	NaN	1	0	Median	641500000	266910000	374590000	128910000	45626000	83285000	337170000	158410000	178770000	166520000	59339000	107180000	8900700	3538500	5362200	6039	2644;1222	5702	37762;37763;37764;37765;37766	51622;51623;51624;51625;51626;51627	51623			6	
AVVIVDDRGRPSGK	1	Unmodified	1467.8158	0.81577505	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			21.658	20.454	3	0.055183	16676	160511_QHF_FH_JSI10i_3	40.552	27.674			2.9636	3.3734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9636	3.3734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11753000	2461700	9291600	0	0	0	11753000	2461700	9291600	0	0	0	0	0	0	6040	2644	5703	37767	51628	51628			1	
AVVLAANHFGR	0	Unmodified	1153.6356	0.63562584	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			43.529	34.914	3	1.657E-08	19390	160513_QHF_FH_JSI10Kac_6	117.31	94.571			1.5144	1.7911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5144	1.7911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16881000	8111600	8769500	0	0	0	16881000	8111600	8769500	0	0	0	0	0	0	6041	2405	5704	37768	51629	51629			1	
AVVLEYFTR	0	Unmodified	1096.5917	0.59169534	718	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	69.081	68.267	2	0.00054075	60683	160511_QHF_FH_JSI11i_3	78.77	65.811			1.0281	1.0278	13.567	4	0	Linear	1.0974	0.89387	NaN	1	0	Median	0.66053	0.7568	NaN	1	0	Median	1.0856	1.0103	NaN	1	0	Median	0.97363	1.0056	NaN	1	0	Median	272100000	143970000	128130000	37360000	14990000	22371000	33685000	22073000	11612000	102020000	53086000	48933000	99037000	53825000	45212000	6042	718	5705	37769;37770;37771;37772	51630;51631;51632;51633;51634;51635;51636;51637	51631			8	
AVVLHPR	0	Unmodified	790.48136	0.48135703	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	11.314	10.965	2	0.0073844	8599	160511_QHF_FH_JSI10i_3	87.627	44.854			0.85776	1.0766	17.527	4	0	Linear	1.4384	1.155	NaN	1	0	Median	0.85048	0.98551	NaN	1	0	Median	0.8651	0.78434	NaN	1	0	Median	0.81191	0.83026	NaN	1	0	Median	371120000	188970000	182140000	125400000	47220000	78177000	124100000	72670000	51432000	52047000	29666000	22381000	69572000	39417000	30155000	6043	350	5706	37773;37774;37775;37776	51638;51639	51638			2	
AVVLMGK	1	Unmodified	716.42548	0.42548163	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.64	3	3	4				1	3	4	4	5	5	4	34.275	29.69	2	0.0054387	16472	160513_QHF_FH_JSI9Kac_5	94.669	94.669			1.011	1.1096	48.467	18	1	Median	1.4316	1.2025	11.891	4	0	Median	0.97024	1.1497	72.792	5	0	Median	0.94407	0.89705	31.208	5	0	Median	0.83411	0.91122	40.617	4	1	Median	11025000000	4945700000	6079600000	2186000000	904680000	1281300000	929420000	341590000	587840000	4210900000	2029600000	2181200000	3699000000	1669800000	2029300000	6044	837	5707	37777;37778;37779;37780;37781;37782;37783;37784;37785;37786;37787;37788;37789;37790;37791;37792;37793;37794	51640;51641;51642;51643;51644;51645;51646;51647;51648;51649;51650;51651;51652;51653;51654;51655;51656;51657;51658;51659;51660;51661;51662;51663;51664;51665	51649			26	
AVVLMGK	1	Oxidation (M)	732.4204	0.42039626	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.93	1	2	1				1	1		1	2	2	1	23.368	19.938	2	0.021015	24774	160511_QHF_FH_JSI10i_3	66.994	33.255			1.3932	1.4541	32.891	6	1	Median	2.8287	2.3073	NaN	1	0	Median	1.4232	1.6469	32.348	2	0	Median	1.3932	1.3901	21.102	2	1	Median	0.91517	0.98417	NaN	1	0	Median	264770000	123400000	141370000	21550000	11419000	10131000	156860000	71702000	85156000	70362000	30717000	39645000	16003000	9561700	6441200	6045	837	5707	37795;37796;37797;37798;37799;37800	51666;51667;51668;51669;51670	51666		354	5	
AVVLPGR	0	Unmodified	710.44391	0.44390889	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	25.957	25.925	2	0.012126	21665	160511_QHF_FH_JSI12i_3	75.131	35.982			1.2501	1.2978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2501	1.2978	NaN	1	1	Median	115360000	41690000	73668000	0	0	0	0	0	0	0	0	0	115360000	41690000	73668000	6046	3819	5708	37801	51671	51671			1	
AVVLQAQNQMSEAHK	1	Unmodified	1652.8304	0.83043884	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	30.112	29.835	3	3.3791E-10	25106	160511_QHF_FH_JSI12i_3	141.88	122.3			0.55289	0.5317	39.587	4	3	Median	0.39901	0.34769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75456	0.70245	37.11	2	2	Median	0.52675	0.52321	NaN	1	0	Median	344080000	190580000	153510000	45601000	31565000	14036000	0	0	0	194950000	103520000	91428000	103530000	55490000	48043000	6047	5352	5709	37802;37803;37804;37805	51672;51673;51674;51675;51676	51675			5	
AVVLQAQNQMSEAHK	1	Oxidation (M)	1668.8254	0.82535346	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	17.886	17.924	3	0.01744	14502	160511_QHF_FH_JSI12i_3	35.037	23.014			0.86045	0.85465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86045	0.85465	NaN	1	0	Median	30092000	17567000	12524000	0	0	0	0	0	0	0	0	0	30092000	17567000	12524000	6048	5352	5709	37806	51677	51677		2638	1	
AVVMDLLR	0	Unmodified	915.52117	0.52117293	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	66.908	66.012	2	0.0010446	58593	160511_QHF_FH_JSI10i_2	87.323	51.443			1.0143	1.025	3.2636	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78032	0.96589	NaN	1	1	Median	1.0143	1.025	NaN	1	0	Median	0.94604	1.0186	NaN	1	0	Median	138920000	70095000	68821000	0	0	0	47824000	26088000	21736000	59434000	26965000	32469000	31658000	17042000	14616000	6049	2348	5710	37807;37808;37809;37810;37811	51678;51679;51680;51681;51682;51683	51683			6	
AVVMISCNR	0	Unmodified	1048.5158	0.51576998	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.36			2					4	2	1	2	3	2	37.236	30.014	2	0.0014761	17198	160513_QHF_FH_JSI11Kac_5	85.064	50.256			1.0142	0.99133	28.716	8	3	Median	1.0511	0.88961	NaN	1	0	Median	0.85503	0.99133	3.9235	2	1	Median	1.1912	1.109	9.285	3	1	Plateau	1.5915	1.6695	34.061	2	1	Median	274150000	130590000	143560000	7289900	3348900	3940900	28283000	15002000	13280000	127330000	67261000	60072000	111240000	44973000	66266000	6050	1178	5711	37812;37813;37814;37815;37816;37817;37818;37819	51684;51685;51686;51687;51688;51689;51690;51691;51692;51693	51687			9	
AVVMISCNR	0	Oxidation (M)	1064.5107	0.5106846	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	15	0								3			1	1	1	31.596	22.159	2	0.0026392	12545	160513_QHF_FH_JSI12Kac_5	74.127	69.771			0.9945	0.97083	29.594	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86614	1.0304	NaN	1	0	Median	0.9945	0.97083	NaN	1	0	Median	1.5564	1.6655	NaN	1	0	Median	21724000	10387000	11337000	0	0	0	5963000	2863100	3099900	12050000	6213300	5836800	3710700	1310300	2400400	6051	1178	5711	37820;37821;37822	51694;51695;51696;51697	51695		804	4	
AVVMLEYVER	0	Unmodified	1207.6271	0.62709457	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		4								2	2			67.097	66.242	2	0.0010097	58798	160511_QHF_FH_JSI10i_2	80.239	50.572			1.0116	1.0628	9.3199	3	3	Median	1.2629	1.0628	NaN	1	1	Median	0.92808	1.1181	12.513	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152690000	72583000	80103000	40475000	18123000	22352000	112210000	54460000	57751000	0	0	0	0	0	0	6052	2454	5712	37823;37824;37825;37826	51698;51699;51700;51701	51701			4	
AVVPAKYLDEDTIYHLQPSGR	1	Acetyl (K)	2413.2278	0.22777469	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.29	71.976	3	9.1314E-09	39599	160513_QHF_FH_JSI11Kac_6	146.72	116.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36973000	36973000	0	0	0	0	0	0	0	36973000	36973000	0	0	0	0	6053	1370	5713	37827	51702	51702	1307		1	
AVVPASLSGQDVGSFAYLTIK	1	Acetyl (Protein N-term)	2164.1416	0.14158544	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	102.09	101.96	2	8.331E-07	92589	160511_QHF_FH_JSI12i_1	95.236	72.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52374000	0	52374000	0	0	0	0	0	0	0	0	0	52374000	0	52374000	6054	4800	5714	37828	51703	51703			1	
AVVPEMEK	1	Unmodified	901.4579	0.45790397	4429	Q9BTZ2;Q6PKH6;P0CG22	DHRS4;DHRS4L2;DHRS4L1	Dehydrogenase/reductase SDR family member 4;Dehydrogenase/reductase SDR family member 4-like 2;Putative dehydrogenase/reductase SDR family member 4-like 1	yes	no	0	0	0	0		By MS/MS			1	0	1										1			28.812	28.493	2	0.010658	25284	160511_QHF_FH_JSI10i_1	63.48	34.331			0.60868	0.71674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60868	0.71674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88885000	52396000	36489000	0	0	0	88885000	52396000	36489000	0	0	0	0	0	0	6055	4429	5715	37829	51704	51704			1	
AVVPGPAEHPLQYNYTFWYSR	0	Unmodified	2494.207	0.20697967	431	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.68		2	3						6	1	4	3	3	82.549	77.171	3;4	5.8708E-29	41187	160513_QHF_FH_JSI10Kac_6	156.92	139.09			1.0197	1.0816	10.421	10	1	Median	1.5048	1.2752	NaN	1	0	Median	0.98073	1.1653	8.9225	3	1	Plateau	1.0915	1.0231	7.3835	3	0	Median	0.98145	1.0304	14.045	3	0	Median	6215800000	2916100000	3299700000	1192500000	473680000	718800000	2449100000	1189900000	1259100000	1416900000	672530000	744390000	1157400000	579990000	577400000	6056	431	5716	37830;37831;37832;37833;37834;37835;37836;37837;37838;37839;37840	51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715;51716;51717;51718	51718			14	
AVVPGVKPQDWISAAR	1	Unmodified	1692.9311	0.93113916	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		68.671	67.684	3	0.00012477	60094	160511_QHF_FH_JSI11i_3	71.08	52.022			0.9059	0.85658	6.7194	3	1	Median	1.0802	0.86536	NaN	1	0	Median	0.65321	0.76662	NaN	1	1	Median	0.9059	0.85658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	625260000	323820000	301440000	153720000	70947000	82773000	204960000	118220000	86737000	266580000	134650000	131930000	0	0	0	6057	4892	5717	37841;37842;37843	51719;51720;51721;51722;51723	51719			5	
AVVPLGLYTGQLALNWAWPPIFFGAR	0	Unmodified	2856.5479	0.54792704	1358	P30536	TSPO	Translocator protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									6	2	3		1	101.64	94.14	2;3;4	2.0679E-222	56575	160513_QHF_FH_JSI10Kac_6	385.8	363.33			0.91633	1.0931	12.337	6	0	Median	1.3873	1.194	3.0304	2	0	Median	0.90153	1.0792	7.2015	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81167	0.87637	NaN	1	0	Median	3883700000	1884200000	1999500000	490910000	209450000	281460000	3370000000	1661300000	1708700000	0	0	0	22817000	13457000	9360200	6058	1358	5718	37844;37845;37846;37847;37848;37849	51724;51725;51726;51727;51728	51726			5	
AVVPPISLSTTFK	1	Unmodified	1358.781	0.78095267	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	81.941	81.451	2	6.6891E-05	70435	160511_QHF_FH_JSI12i_2	114.83	66.037			0.88755	1.0246	10.663	7	2	Median	1.173	1.0061	NaN	1	0	Median	0.88088	1.0483	3.2372	2	0	Median	1.0232	0.98923	18.292	2	1	Median	0.96402	1.0223	17.373	2	1	Median	744730000	380110000	364620000	108570000	49274000	59293000	221430000	109740000	111690000	197440000	110880000	86562000	217290000	110210000	107080000	6059	1397	5719	37850;37851;37852;37853;37854;37855;37856	51729;51730;51731;51732;51733;51734;51735;51736;51737	51730			9	
AVVPSYIPLVK	1	Unmodified	1184.7169	0.71689585	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.39	2	4	1					1		2	1	3	2	77.163	75.136	2	0.00019001	68763	160511_QHF_FH_JSI11i_1	81.594	61.265			1.0884	1.0423	32.27	8	1	Median	1.0282	0.86738	7.2601	2	0	Median	0.80895	0.98999	NaN	1	0	Median	1.103	1.0973	28.667	3	1	Median	1.5692	1.6885	26.171	2	0	Median	358070000	169560000	188510000	66745000	33386000	33358000	54400000	31546000	22854000	142660000	62627000	80031000	94270000	42004000	52267000	6060	1456	5720	37857;37858;37859;37860;37861;37862;37863;37864	51738;51739;51740;51741;51742;51743;51744;51745;51746;51747	51738			10	
AVVQLKPR	1	Acetyl (K)	951.58655	0.58655038	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			1	2	2	46.217	35.987	2	0.00027815	21494	160513_QHF_FH_JSI11Kac_4	131.04	70.249			0.079173	0.078057	198.44	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.079173	0.078057	198.44	2	1	Median	NaN	NaN	NaN	0	0	Median	33257000	27655000	5601800	0	0	0	1278900	1278900	0	29142000	23540000	5601800	2836400	2836400	0	6061	2636	5721	37865;37866;37867;37868;37869	51748;51749;51750;51751;51752	51748	2598		5	
AVVQSPQVTEVL	0	Unmodified	1268.6976	0.69761697	2812	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				71.774	70.829	2	0.001182	62975	160511_QHF_FH_JSI9i_1	64.711	55.753			1.9365	1.5822	NaN	1	0	Median	1.9365	1.5822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24264000	6866900	17397000	24264000	6866900	17397000	0	0	0	0	0	0	0	0	0	6062	2812	5722	37870	51753	51753			1	
AVVTGLVHK	1	Unmodified	922.56	0.56000128	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	24.83	24.17	2;3	1.6541E-07	19871	160511_QHF_FH_JSI12i_3	118.5	99.018			1.0288	0.99584	17.378	8	0	Median	0.94189	0.76225	7.9451	2	0	Median	1.0327	1.1684	4.9225	2	0	Median	1.0726	0.99203	3.4358	2	0	Median	1.0191	1.0353	8.3958	2	0	Median	866760000	462720000	404040000	161530000	72347000	89180000	146850000	81152000	65701000	221260000	124450000	96811000	337120000	184770000	152350000	6063	2834	5723	37871;37872;37873;37874;37875;37876;37877;37878	51754;51755;51756;51757;51758;51759;51760	51760			7	
AVVTHSSGNHGQALTYAAK	1	Unmodified	1910.9599	0.9598731	4607	Q9GZT4	SRR	Serine racemase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			20.181	18.96	3;4	0.00024278	15231	160511_QHF_FH_JSI9i_3	61.87	51.083			1.0783	0.86653	20.155	4	3	Median	1.3385	1.0629	21.718	3	3	Plateau	0.70808	0.80941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154160000	69504000	84655000	119230000	52107000	67122000	34930000	17397000	17533000	0	0	0	0	0	0	6064	4607	5724	37879;37880;37881;37882	51761;51762;51763;51764;51765	51765			5	
AVVTLDASDDGILAK	1	Unmodified	1486.7879	0.78788854	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.463	67.859	2	0.0051276	61845	160511_QHF_FH_JSI12i_1	62.338	44.902			2.1737	2.15	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1737	2.15	NaN	1	1	Median	10638000	4428500	6209500	0	0	0	0	0	0	0	0	0	10638000	4428500	6209500	6065	122	5725	37883	51766	51766			1	
AVVVCPK	1	Unmodified	771.4313	0.43129529	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.57	5	1					2			1	1	2	4	19.474	16.242	2	0.00608	13527	160511_QHF_FH_JSI12i_2	80.377	48.264			0.72072	0.74786	23.694	5	5	Median	NaN	NaN	NaN	0	0	Median	0.74797	0.87057	NaN	1	1	Median	0.59587	0.5892	20.897	2	2	Median	0.78435	0.833	15.248	2	2	Median	1310200000	894690000	415530000	0	0	0	336990000	208970000	128010000	464470000	304050000	160420000	508770000	381670000	127100000	6066	2161	5726	37884;37885;37886;37887;37888;37889;37890;37891	51767;51768;51769;51770;51771;51772;51773;51774	51768			8	
AVVVCPKDEDYK	2	Acetyl (K)	1463.6966	0.6966307	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		50.633	41.226	2	1.2973E-05	22699	160513_QHF_FH_JSI11Kac_3	102.61	95.01			0.21269	0.20666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21269	0.20666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4807900	3547100	1260800	0	0	0	606580	0	606580	4201300	3547100	654190	0	0	0	6067	2161	5727	37892;37893	51775;51776;51777	51776	2269;2270		3	
AVVVGFDPHFSYMK	1	Unmodified	1595.7806	0.7806351	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.2		7	5						5	5	5	3	4	75.601	72.371	2;3	8.4368E-12	37706	160513_QHF_FH_JSI11Kac_6	127.76	115.13			1.0196	1.0148	29.979	16	4	Median	1.3888	1.1099	46.488	5	3	Median	0.84797	0.99555	27.828	4	1	Median	0.90122	0.90482	7.4595	3	0	Plateau	0.96655	1.0446	27.493	4	0	Median	2573200000	1265100000	1308100000	898370000	410210000	488160000	571770000	304690000	267090000	645960000	317680000	328290000	457110000	232560000	224550000	6068	23	5728	37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906;37907;37908;37909;37910	51778;51779;51780;51781;51782;51783;51784;51785;51786;51787;51788;51789;51790;51791;51792;51793;51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804	51787			27	
AVVVGFDPHFSYMK	1	Oxidation (M)	1611.7755	0.77554972	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	9	7		3							3		2	2	2	70.226	65.401	3	1.5556E-07	33904	160513_QHF_FH_JSI12Kac_6	107.14	96.352			0.83108	0.8767	37.496	6	3	Median	NaN	NaN	NaN	0	0	Median	0.60707	0.73604	46.938	2	1	Median	0.61411	0.59173	33.388	2	1	Median	1.0012	1.0799	1.2839	2	1	Median	365050000	214050000	151000000	0	0	0	167880000	114740000	53136000	114680000	61610000	53068000	82500000	37702000	44798000	6069	23	5728	37911;37912;37913;37914;37915;37916	51805;51806;51807;51808;51809;51810;51811;51812;51813	51810		5	9	
AVVVNAAQLASYSQSK	1	Unmodified	1634.8628	0.86278482	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.29	6	6	5				4	6	1	5	6	11	6	64.094	59.629	2;3	8.4868E-98	52949	160511_QHF_FH_JSI11i_3	318.64	283.94			1.0162	1.109	21.149	26	2	Median	1.4714	1.2448	20.155	5	0	Median	0.94906	1.1397	29.808	6	1	Median	1.0543	1.0024	15.221	9	0	Median	0.90721	0.97701	19.902	6	1	Median	1486100000	760680000	725410000	146870000	61329000	85537000	233450000	108660000	124790000	553130000	279360000	273770000	552650000	311330000	241320000	6070	2198	5729	37917;37918;37919;37920;37921;37922;37923;37924;37925;37926;37927;37928;37929;37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944	51814;51815;51816;51817;51818;51819;51820;51821;51822;51823;51824;51825;51826;51827;51828;51829;51830;51831;51832;51833;51834;51835;51836;51837;51838;51839;51840;51841;51842;51843;51844;51845;51846;51847;51848;51849;51850;51851;51852	51815			39	
AVVVPWGSCHFLEK	1	Unmodified	1627.8181	0.81808324	3711	Q8TCT8	SPPL2A	Signal peptide peptidase-like 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	74.154	73.461	2;3	9.796E-05	63563	160511_QHF_FH_JSI12i_3	74.475	63.531			1.0384	1.2161	24.011	5	1	Median	1.5959	1.302	NaN	1	0	Median	1.0384	1.2161	NaN	1	0	Median	0.87536	0.82671	NaN	1	0	Median	0.9972	1.0264	32.521	2	1	Median	690530000	316510000	374020000	39695000	15466000	24229000	57166000	27871000	29295000	271220000	137010000	134210000	322450000	136160000	186290000	6071	3711	5730	37945;37946;37947;37948;37949	51853;51854;51855;51856;51857;51858;51859	51856			6	
AVVVTDGER	0	Unmodified	944.49271	0.49270958	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.327	14.869	2	0.0010356	12269	160511_QHF_FH_JSI11i_1	81.548	44.527			1.2943	1.7718	19.767	4	4	Linear	1.3661	1.1287	NaN	1	1	Median	1.1015	1.2739	NaN	1	1	Median	1.2263	1.2033	NaN	1	1	Median	1.6665	1.7603	NaN	1	1	Median	759580000	326980000	432610000	153760000	59949000	93813000	203080000	102830000	100250000	190270000	94437000	95832000	212470000	69758000	142710000	6072	1225	5731	37950;37951;37952;37953	51860;51861;51862;51863	51860			4	
AVVVVDDR	0	Unmodified	871.47633	0.47633123	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7	6	1					1					1		1	30.388	22.122	2	0.005666	19772	160511_QHF_FH_JSI12i_1	61.962	25.777			0.99224	1.1718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99224	1.1718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3773400	1794200	1979200	0	0	0	3773400	1794200	1979200	0	0	0	0	0	0	6073	3809	5732	37954;37955	51864;51865	51864			2	
AVVYSNTIQSIIAIIR	0	Unmodified	1760.0196	0.019619815	2049	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.394	88.329	2;3	1.2242E-22	52285	160513_QHF_FH_JSI10Kac_6	198.55	164.66			0.94707	0.85388	24.499	3	1	Plateau	0.83099	0.72988	NaN	1	0	Median	0.48594	0.56036	NaN	1	1	Median	0.95916	0.91419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	350460000	196610000	153850000	79335000	41583000	37752000	189500000	120280000	69217000	81622000	34742000	46880000	0	0	0	6074	2049	5733	37956;37957;37958	51866;51867;51868	51868			2	
AVVYSNTIQSIMAIVK	1	Unmodified	1735.9542	0.95424237	818	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	101.59	101.47	2	1.1406E-208	82332	160511_QHF_FH_JSI9i_3	327.05	283.77			0.91754	0.86257	17.021	4	2	Median	0.94507	0.77992	NaN	1	0	Median	0.75278	0.85942	25.808	2	2	Median	NaN	NaN	NaN	0	0	Median	0.93063	0.95399	NaN	1	0	Median	711270000	364660000	346610000	106430000	47933000	58495000	301980000	166040000	135940000	0	0	0	302860000	150680000	152170000	6075	818	5734	37959;37960;37961;37962	51869;51870;51871;51872;51873;51874	51872			6	
AVWAKGIR	1	Acetyl (K)	941.54469	0.54468557	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	51.705	42.368	2	1.5047E-10	23038	160513_QHF_FH_JSI11Kac_6	154.09	109.12			0.76293	0.85001	59.498	4	0	Median	1.3039	1.1202	NaN	1	0	Median	0.95116	1.0919	NaN	1	0	Median	0.33376	0.31434	NaN	1	0	Median	0.61195	0.66173	NaN	1	0	Median	171620000	109880000	61742000	12421000	4200200	8221100	58761000	33524000	25237000	75944000	57371000	18573000	24494000	14783000	9711300	6076	2035	5735	37963;37964;37965;37966	51875;51876;51877;51878;51879;51880	51876	2076		6	
AVWHTNVFK	1	Unmodified	1100.5767	0.57671398	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	39.434	38.867	2;3	0.00023955	32945	160511_QHF_FH_JSI12i_3	80.755	67.663			0.91991	0.9047	16.712	6	1	Median	1.3589	1.1004	NaN	1	0	Median	0.96187	1.104	NaN	1	0	Median	0.91175	0.84596	9.093	2	0	Median	0.77516	0.81499	15.168	2	1	Median	564420000	311860000	252560000	43536000	20394000	23142000	33616000	17251000	16365000	160500000	102900000	57598000	326770000	171310000	155460000	6077	3639	5736	37967;37968;37969;37970;37971;37972	51881;51882;51883;51884	51884			1	
AVWIQAQQLQGEALHQMQALYGQHFPIEVR	0	Acetyl (Protein N-term)	3530.7881	0.7881271	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	1	0	0		By MS/MS			16	0									1		1			97.799	92.079	4	1.8648E-10	53702	160513_QHF_FH_JSI10Kac_6	100.24	83.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6078	1750	5737	37973	51885	51885			1	
AVWLPAMK	1	Unmodified	914.50479	0.50479459	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	2	4	1	64.104	63.348	2	0.00066278	55760	160511_QHF_FH_JSI9i_2	100.82	63.801			1.1614	1.1045	21.804	8	1	Median	1.3542	1.1355	13.42	2	0	Median	0.90793	1.0674	10.775	2	0	Median	1.1191	1.059	35.3	3	1	Median	1.2815	1.2666	NaN	1	0	Median	1229900000	566210000	663710000	203960000	83003000	120960000	290110000	150000000	140110000	383580000	174980000	208600000	352280000	158240000	194040000	6079	2296	5738	37974;37975;37976;37977;37978;37979;37980;37981;37982	51886;51887;51888;51889;51890;51891;51892;51893;51894;51895;51896;51897;51898;51899;51900;51901;51902;51903	51895			18	
AVWLPAVK	1	Unmodified	882.53272	0.5327239	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	61.889	61.069	2	0.00024987	52384	160511_QHF_FH_JSI12i_2	116.35	53.512			1.058	1.0132	8.7934	9	0	Median	1.1681	0.97671	5.1864	2	0	Median	0.84945	1.0059	18.05	2	0	Median	1.0341	1.0221	5.9624	3	0	Plateau	0.9632	1.0116	11.684	2	0	Median	1595800000	782480000	813320000	221420000	104810000	116610000	313780000	164600000	149180000	553800000	260480000	293320000	506800000	252600000	254210000	6080	2046	5739	37983;37984;37985;37986;37987;37988;37989;37990;37991;37992	51904;51905;51906;51907;51908;51909;51910;51911;51912;51913;51914;51915;51916;51917;51918;51919;51920	51907			17	
AVYDFKAQTSK	2	Acetyl (K)	1298.6507	0.65066678	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		52.636	41.902	2	0.00074465	24469	160513_QHF_FH_JSI11Kac_4	88.681	46.701			0.33999	0.31153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33999	0.31153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1530600	1364400	166230	0	0	0	0	0	0	1530600	1364400	166230	0	0	0	6081	616	5740	37993	51921	51921	317		1	
AVYEAVLR	0	Unmodified	919.51272	0.51271674	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13	4.51			1				1	3	1	1	2	2	1	46.736	38.307	2	0.023199	19670	160513_QHF_FH_JSI10Kac_5	54.549	29.731			1.0225	1.1062	18.699	6	0	Median	1.0559	0.95892	NaN	1	0	Median	0.97151	1.1652	0.46464	2	0	Median	0.96814	0.91896	19.344	2	0	Median	1.2483	1.3795	NaN	1	0	Median	63561000	32252000	31309000	3355400	1677000	1678300	10503000	5604000	4898500	42195000	21489000	20707000	7507900	3482300	4025600	6082	1022	5741	37994;37995;37996;37997;37998;37999	51922;51923;51924	51924			3	
AVYEDRPPGSVVPTSAAEASR	0	Unmodified	2158.0655	0.065460388	4662	Q9H1Z4	WDR13	WD repeat-containing protein 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	43.983	43.436	3	6.4779E-10	37417	160511_QHF_FH_JSI11i_2	113.99	100.81			0.89497	0.97026	25.679	5	1	Median	1.4531	1.2254	NaN	1	0	Median	0.87532	1.0672	NaN	1	0	Median	0.79309	0.77509	31.762	2	1	Median	0.89497	0.89498	NaN	1	0	Median	229240000	115790000	113450000	39956000	13546000	26410000	39496000	21514000	17983000	107420000	60481000	46935000	42372000	20252000	22121000	6083	4662	5742	38000;38001;38002;38003;38004	51925;51926;51927;51928;51929;51930;51931;51932;51933	51929			9	
AVYHNMPLIWK	1	Unmodified	1370.7169	0.71691263	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	61.133	60.95	2;3	2.952E-05	52517	160511_QHF_FH_JSI12i_3	95.573	81.61			0.84641	0.87457	17.867	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0793	0.99999	NaN	1	1	Median	0.77025	0.78352	15.547	2	2	Median	918520000	504760000	413760000	0	0	0	0	0	0	379340000	198820000	180520000	539180000	305940000	233240000	6084	3844	5743	38005;38006;38007;38008	51934;51935;51936;51937	51937			4	
AVYHNMPLIWKPGYLDR	1	Unmodified	2072.0666	0.066586783	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			75.03	68.649	3;4	0.00091342	37351	160513_QHF_FH_JSI10Kac_6	62.525	46.641			0.75571	0.8933	19.307	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75571	0.8933	19.307	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114190000	71513000	42674000	0	0	0	114190000	71513000	42674000	0	0	0	0	0	0	6085	3844	5744	38009;38010	51938;51939;51940	51939			3	
AVYIAPLK	1	Unmodified	873.53239	0.53238955	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.703	46.207	2	0.0028682	41693	160511_QHF_FH_JSI11i_1	76.847	39.826			0.68844	0.73278	32.76	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.62812	0.7516	NaN	1	0	Median	0.75001	0.73278	NaN	1	0	Median	0.41954	0.42095	NaN	1	1	Median	126300000	72322000	53978000	0	0	0	54116000	30605000	23512000	55007000	30942000	24065000	17177000	10776000	6400900	6086	3516	5745	38011;38012;38013	51941;51942;51943;51944	51941			4	
AVYIFAK	1	Unmodified	810.46398	0.46397563	949;1362	P30711;P0CG30;P0CG29	GSTT1;GSTT2B;GSTT2	Glutathione S-transferase theta-1;Glutathione S-transferase theta-2B;Glutathione S-transferase theta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	3.86		1					2	4	4	2	4	3	2	56.24	46.903	2	0.0012098	24846	160513_QHF_FH_JSI9Kac_6	109.88	40.448			0.94511	1.03	8.2802	11	0	Median	1.1162	0.95522	11.072	2	0	Median	0.88277	1.0422	3.1863	4	0	Median	1.0095	1.02	11.989	3	0	Median	0.95868	1.0309	11.328	2	0	Median	1292900000	618300000	674580000	302100000	158100000	144000000	549240000	262140000	287090000	296080000	133480000	162600000	145460000	64571000	80889000	6087	1362;949	5746	38014;38015;38016;38017;38018;38019;38020;38021;38022;38023;38024	51945;51946;51947;51948;51949;51950;51951;51952;51953;51954;51955;51956;51957;51958;51959;51960;51961;51962;51963;51964;51965	51959			21	
AVYIGVHVPFSK	1	Unmodified	1315.7289	0.72885752	5740	Q9Y6M7	SLC4A7	Sodium bicarbonate cotransporter 3	yes	yes	0	0	0	0		By matching		By MS/MS	16	0									2		1		1	73.245	64.791	3	0.0079232	33906	160513_QHF_FH_JSI12Kac_6	38.799	30.286			1.6341	1.8447	43.2	2	0	Median	NaN	NaN	NaN	0	0	Median	2.1155	2.5038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2622	1.3591	NaN	1	0	Median	55434000	25897000	29536000	0	0	0	34212000	15976000	18237000	0	0	0	21221000	9921600	11300000	6088	5740	5747	38025;38026	51966	51966			1	
AVYLFYGTK	1	Unmodified	1060.5593	0.55933258	1770	P52429	DGKE	Diacylglycerol kinase epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.35								1	6	2	1	2	2	68.68	59.26	2	7.0139E-06	32071	160513_QHF_FH_JSI11Kac_6	127.56	100.96			1.0999	1.0815	35.544	7	6	Median	0.84859	0.7079	26.488	2	1	Median	1.1621	1.3906	NaN	1	1	Median	1.3407	1.3211	28.305	2	2	Median	1.0262	1.1054	32.803	2	2	Median	122080000	57165000	64915000	15339000	7292100	8047000	22450000	10399000	12051000	49005000	18783000	30222000	35286000	20691000	14595000	6089	1770	5748	38027;38028;38029;38030;38031;38032;38033	51967;51968;51969;51970;51971;51972;51973	51968			7	
AVYMMPTEGDDSSK	1	Unmodified	1529.6378	0.63779519	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.514	42.745	2	5.6862E-07	38778	160511_QHF_FH_JSI12i_1	138.25	131.12			1.14	1.1439	39.272	5	1	Median	2.0774	1.7102	65.139	2	1	Median	0.98931	1.1753	NaN	1	0	Median	1.14	1.1223	NaN	1	0	Median	1.1178	1.1439	NaN	1	0	Median	713810000	330210000	383600000	168410000	62595000	105820000	177640000	84286000	93358000	180920000	82950000	97971000	186840000	100380000	86458000	6090	3922	5749	38034;38035;38036;38037;38038	51974;51975;51976;51977;51978;51979;51980;51981	51976			8	
AVYMMPTEGDDSSK	1	Oxidation (M)	1545.6327	0.63270981	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.569	34.176	2	2.3157E-09	30869	160511_QHF_FH_JSI12i_1	104.79	88.163			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6091	3922	5749	38039;38040;38041	51982;51983;51984	51983		2351	3	
AVYSTNCPVWEEAFR	0	Unmodified	1827.825	0.82501911	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	77.888	76.97	2	3.4532E-10	67569	160511_QHF_FH_JSI11i_2	152.14	136.6			1.1951	1.2408	41.744	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92045	0.92362	NaN	1	0	Median	1.5516	1.6668	NaN	1	0	Median	43240000	21444000	21796000	0	0	0	0	0	0	27069000	14060000	13009000	16171000	7384100	8787000	6092	4399	5750	38042;38043	51985;51986;51987;51988	51988			4	
AVYTLTSLYR	0	Unmodified	1185.6394	0.63937381	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	6.45		2	4					3	4	3	4	3	3	67.944	62.361	2	3.9327E-25	34240	160513_QHF_FH_JSI10Kac_6	187	157.91			0.98199	1.001	6.7387	13	2	Median	1.2979	1.0989	10.438	3	0	Median	0.83571	1.0086	6.8052	4	1	Median	1.0182	0.99336	6.3405	3	0	Median	0.95873	1.001	0.33031	3	1	Median	2306800000	1145700000	1161000000	282890000	117260000	165630000	829600000	449050000	380540000	638490000	285350000	353140000	555800000	294080000	261730000	6093	4939	5751	38044;38045;38046;38047;38048;38049;38050;38051;38052;38053;38054;38055;38056	51989;51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003	52003			15	
AVYTLYQQR	0	Unmodified	1140.5928	0.59275797	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.2			3					1	4	1	3	2	2	41.461	35.393	2	1.1639E-07	19261	160513_QHF_FH_JSI11Kac_6	168.45	135.98			1.0326	1.0455	9.7339	8	0	Median	1.262	1.092	NaN	1	0	Median	0.87571	1.0437	12.812	3	0	Median	1.0461	0.99675	7.0122	2	0	Median	0.97111	1.0247	10.641	2	0	Median	162970000	81049000	81918000	13444000	5569200	7874800	48941000	26070000	22871000	54832000	24753000	30078000	45751000	24656000	21094000	6094	5106	5752	38057;38058;38059;38060;38061;38062;38063;38064	52004;52005;52006;52007;52008;52009;52010;52011;52012;52013;52014;52015;52016;52017;52018;52019	52009			16	
AVYTQDCPLAAAK	1	Unmodified	1406.6864	0.68640036	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.98	6					1	2			1	3	4	1	43.273	39.525	2	3.4306E-44	35429	160511_QHF_FH_JSI10i_1	252.82	211.8			0.94705	1.0042	19.679	9	6	Median	1.2792	1.059	NaN	1	0	Median	0.94705	1.1103	6.7997	3	2	Median	0.90585	0.89614	14.942	4	4	Median	1.3762	1.4407	NaN	1	0	Median	2211300000	1022900000	1188400000	152450000	69832000	82613000	738660000	323910000	414750000	861810000	442040000	419780000	458360000	187110000	271250000	6095	1664	5753	38065;38066;38067;38068;38069;38070;38071;38072;38073	52020;52021;52022;52023;52024;52025;52026;52027;52028;52029;52030;52031	52025			12	
AVYTSGK	1	Unmodified	724.37555	0.37555455	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	6.8303	6.5195	2	0.028235	4431	160511_QHF_FH_JSI12i_1	55.504	34.949			0.61315	0.60448	16.782	5	5	Median	0.92523	0.80671	NaN	1	1	Median	0.47329	0.59191	NaN	1	1	Median	0.60108	0.59826	1.4635	2	2	Median	0.77359	0.81231	NaN	1	1	Median	1208900000	618570000	590290000	104980000	52068000	52913000	97803000	64784000	33020000	555930000	277600000	278340000	450150000	224130000	226030000	6096	2545	5754	38074;38075;38076;38077;38078	52032;52033;52034;52035;52036	52033			5	
AWAGSPK	1	Unmodified	715.36532	0.36532422	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.6	2	4	3				1	4	3	4	4	3	6	14.142	9.8	2	0.0028642	8890	160511_QHF_FH_JSI9i_3	108.24	100.08			1.0235	1.0325	22.275	16	1	Median	1.285	1.0734	34.621	4	0	Median	0.93504	1.0912	17.51	4	1	Median	1.0932	0.88019	23.231	3	0	Plateau	0.90807	0.93607	11.375	5	0	Median	7645000000	3813200000	3831700000	994210000	353750000	640460000	1946100000	1086700000	859410000	2201100000	1117900000	1083200000	2503500000	1254900000	1248600000	6097	309	5755	38079;38080;38081;38082;38083;38084;38085;38086;38087;38088;38089;38090;38091;38092;38093;38094;38095	52037;52038;52039;52040;52041;52042;52043;52044;52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055;52056;52057;52058	52043			22	
AWALLQK	1	Unmodified	828.48577	0.48577371	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	2	2	53.882	53.197	1;2	0.0083088	46775	160511_QHF_FH_JSI11i_3	84.025	57.916			0.99023	1.0041	25.531	6	1	Median	1.5482	1.2377	NaN	1	0	Median	0.86285	1	NaN	1	0	Median	0.96842	0.9458	3.5117	2	0	Median	1.3258	1.3533	41.622	2	1	Median	2034700000	961700000	1073000000	260570000	117840000	142740000	347400000	169610000	177790000	524070000	289650000	234430000	902640000	384610000	518040000	6098	2346	5756	38096;38097;38098;38099;38100;38101	52059;52060;52061;52062;52063;52064;52065;52066;52067	52059			9	
AWDDFFPGSDR	0	Unmodified	1311.552	0.55201537	583	O75915	ARL6IP5	PRA1 family protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	73.511	72.97	2	3.4655E-05	63960	160511_QHF_FH_JSI11i_2	98.048	84.671			0.8839	0.95944	8.7243	9	0	Plateau	1.2546	1.0847	NaN	1	0	Median	0.78667	0.92734	4.5636	2	0	Median	0.92631	0.92777	6.5903	3	0	Plateau	0.88887	0.97703	8.9522	3	0	Plateau	564030000	293000000	271030000	58543000	26196000	32347000	121810000	61251000	60563000	196250000	103010000	93244000	187420000	102540000	84877000	6099	583	5757	38102;38103;38104;38105;38106;38107;38108;38109;38110	52068;52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081	52076			14	
AWDIAIATMK	1	Unmodified	1118.5794	0.57941609	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.32	6.7	3	4	3				1	4	4	4	5	5	5	76.321	71.47	2	1.9649E-09	64998	160511_QHF_FH_JSI10i_2	131.44	107.28			1.0447	1.0228	14.932	19	1	Median	1.037	0.88751	8.7698	4	0	Median	0.80995	0.97962	8.4507	5	0	Median	1.1496	1.1431	9.1531	5	0	Median	1.1094	1.1848	21.538	5	1	Median	3929500000	2036100000	1893400000	776450000	392240000	384220000	1065700000	663390000	402350000	1226400000	601540000	624890000	860880000	378920000	481950000	6100	2193	5758	38111;38112;38113;38114;38115;38116;38117;38118;38119;38120;38121;38122;38123;38124;38125;38126;38127;38128;38129	52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107	52100			23	
AWDIAIATMK	1	Oxidation (M)	1134.5743	0.57433072	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.827							5	5	6	3	4	5	4	71.162	61.126	2	1.9532E-06	30599	160513_QHF_FH_JSI10Kac_5	121.73	105.19			1.0011	1.0219	27.07	16	5	Median	0.97666	0.83689	15.612	3	2	Median	0.7949	0.94619	13.967	4	0	Median	1.0998	1.0836	24.546	5	2	Median	0.91033	0.98518	29.435	4	1	Linear	342380000	173100000	169280000	67306000	35596000	31710000	90638000	50586000	40052000	102560000	47544000	55020000	81871000	39373000	42498000	6101	2193	5758	38130;38131;38132;38133;38134;38135;38136;38137;38138;38139;38140;38141;38142;38143;38144;38145	52108;52109;52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124	52119		1833	16	
AWDIGVATMK	1	Unmodified	1090.5481	0.54811597	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			63.952	63.064	2	0.0086606	55886	160511_QHF_FH_JSI10i_2	59.645	37.559			1.0213	1.0601	7.1631	2	2	Median	1.1734	1.0077	NaN	1	1	Median	0.88893	1.1152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78666000	34738000	43929000	37366000	16466000	20900000	41301000	18272000	23029000	0	0	0	0	0	0	6102	2419	5759	38146;38147	52125;52126	52126			2	
AWDQEAEGAGPELGLR	0	Unmodified	1697.8009	0.80091285	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	61.127	60.43	2	7.4226E-22	53060	160511_QHF_FH_JSI9i_2	137.84	121.2			0.93334	0.98915	5.9689	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92062	1.0953	NaN	1	0	Median	1.0128	0.97233	NaN	1	0	Median	0.90533	0.98228	3.4093	2	0	Median	192830000	88406000	104420000	0	0	0	60065000	26503000	33562000	61788000	30830000	30959000	70977000	31074000	39903000	6103	3479	5760	38148;38149;38150;38151;38152;38153;38154	52127;52128;52129;52130;52131;52132;52133;52134;52135;52136;52137;52138	52137			12	
AWDVLLDHIQSAALSK	1	Unmodified	1765.9363	0.93628412	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	91.79	91.436	3	2.563E-22	79205	160511_QHF_FH_JSI12i_3	174.95	163.33			1.0111	1.0226	5.2997	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93058	1.061	NaN	1	0	Median	1.0219	0.95574	NaN	1	0	Median	1.0111	1.0226	NaN	1	0	Median	235270000	101850000	133420000	0	0	0	14187000	5998800	8188400	50177000	19392000	30785000	170900000	76455000	94449000	6104	3262	5761	38155;38156;38157	52139;52140	52140			2	
AWDWVHWFLK	1	Unmodified	1386.6873	0.68732706	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	1.57				1					8	2	2	3	2	95.522	87.052	2;3	4.7857E-34	46916	160513_QHF_FH_JSI12Kac_6	166.19	147.56			0.96921	0.94144	17.143	9	1	Median	1.1127	0.94763	6.7388	2	0	Median	0.75116	0.89524	7.1151	2	0	Median	0.93128	0.86983	23.689	3	1	Median	1.0669	1.1171	14.149	2	0	Median	7600900000	3645800000	3955100000	1921900000	925880000	995990000	2694600000	1377300000	1317400000	2000200000	923090000	1077100000	984190000	419540000	564650000	6105	4180	5762	38158;38159;38160;38161;38162;38163;38164;38165;38166	52141;52142;52143;52144;52145;52146;52147;52148;52149;52150;52151;52152;52153;52154;52155;52156;52157	52151			17	
AWEEYYK	1	Unmodified	987.4338	0.43379771	3966;3911	Q96AE4;Q92945	FUBP1;KHSRP	Far upstream element-binding protein 1;Far upstream element-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.3	5	4	2				1	5		4	4	4	5	39.723	36.45	2	0.0020061	31017	160511_QHF_FH_JSI12i_2	114.19	110.79			1.3019	1.3327	59.659	15	4	Median	0.96479	0.79693	33.644	3	1	Plateau	1.5207	1.8287	93.206	4	1	Median	1.0395	1.0679	36.754	3	0	Plateau	1.3019	1.3327	45.742	5	2	Median	4528700000	1867000000	2661700000	796740000	326930000	469810000	1356200000	502130000	854020000	1398900000	598790000	800070000	976990000	439160000	537830000	6106	3966;3911	5763	38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183	52158;52159;52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174;52175;52176;52177;52178;52179;52180;52181;52182;52183;52184;52185;52186	52163			29	
AWELYGSPNALVLLIAQEK	1	Unmodified	2114.1412	0.14119151	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.9		3							10	4	2	4	3	98.346	91.734	2;3	8.209E-104	52999	160513_QHF_FH_JSI10Kac_6	284.44	249.69			1.0133	1.0719	20.836	13	7	Median	1.2887	1.0971	16.858	4	4	Median	0.9199	1.0855	16.592	2	0	Median	0.89679	0.88116	26.058	4	2	Median	1.1377	1.2046	11.298	3	1	Plateau	2559300000	1239300000	1320000000	864190000	360300000	503890000	484470000	244870000	239600000	825270000	439460000	385800000	385400000	194670000	190740000	6107	1629	5764	38184;38185;38186;38187;38188;38189;38190;38191;38192;38193;38194;38195;38196	52187;52188;52189;52190;52191;52192;52193;52194;52195;52196;52197;52198;52199;52200;52201;52202;52203;52204	52202			18	
AWENSPNVR	0	Unmodified	1071.5098	0.50975662	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	21.606	20.945	2	0.00017913	17235	160511_QHF_FH_JSI11i_2	86.794	75.921			1.0512	1.2285	23.825	5	2	Median	0.99958	0.84992	NaN	1	1	Median	1.0512	1.2983	NaN	1	0	Median	1.2232	1.2285	NaN	1	0	Median	0.96922	1.0129	33.401	2	1	Median	248700000	126050000	122650000	39301000	21360000	17941000	59313000	30546000	28767000	68602000	31940000	36662000	81482000	42203000	39280000	6108	5646	5765	38197;38198;38199;38200;38201	52205;52206;52207;52208;52209	52207			5	
AWFYITYEK	1	Unmodified	1219.5914	0.59136099	4323	Q9BPZ2;Q99865	SPIN2B;SPIN2A	Spindlin-2B;Spindlin-2A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.982	70.619	2	0.00011099	37055	160513_QHF_FH_JSI12Kac_6	111.17	88.93			0.95617	0.89677	27.521	4	0	Median	0.84512	0.72597	NaN	1	0	Median	1.0972	1.2915	NaN	1	0	Median	1.0818	1.0592	NaN	1	0	Median	0.71294	0.75922	NaN	1	0	Median	187150000	97005000	90149000	53331000	25000000	28330000	48598000	26541000	22058000	44553000	20522000	24031000	40672000	24942000	15731000	6109	4323	5766	38202;38203;38204;38205	52210;52211;52212;52213;52214;52215;52216	52214			7	
AWGALIK	1	Unmodified	757.44866	0.44865992	2850	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.496	47.643	2	0.019999	40752	160511_QHF_FH_JSI12i_3	57.453	25.874			0.94379	0.94809	27.728	4	0	Median	1.4448	1.1766	NaN	1	0	Median	1.1177	1.2776	NaN	1	0	Median	0.79695	0.75839	NaN	1	0	Median	0.73794	0.76397	NaN	1	0	Median	302060000	145850000	156210000	55538000	18700000	36838000	48825000	24798000	24028000	80500000	37743000	42757000	117200000	64613000	52589000	6110	2850	5767	38206;38207;38208;38209	52217;52218	52218			2	
AWGAVVPLVGK	1	Unmodified	1095.6441	0.64406526	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	72.922	72.257	2	1.0833E-09	62591	160511_QHF_FH_JSI12i_3	136.16	128.22			0.78579	0.69565	30.107	9	0	Median	0.97735	0.82172	27.207	2	0	Median	0.57226	0.69565	32.29	3	0	Median	0.85753	0.83277	35.471	3	0	Plateau	1.1896	1.2029	NaN	1	0	Median	2069700000	1079200000	990450000	299260000	162320000	136940000	457560000	269610000	187950000	662040000	340420000	321610000	650800000	306850000	343950000	6111	5015	5768	38210;38211;38212;38213;38214;38215;38216;38217;38218	52219;52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231;52232;52233;52234;52235	52234			17	
AWGILTFK	1	Unmodified	934.52764	0.52763852	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	3	2	79.468	76.003	2	0.00038236	38984	160513_QHF_FH_JSI9Kac_6	114.6	102.7			1.0543	1.0062	11.846	11	0	Median	1.3334	1.1107	13.711	3	0	Plateau	0.83524	0.99365	5.1326	3	0	Plateau	1.0286	0.95587	5.4071	3	0	Plateau	1.1639	1.2171	12.861	2	0	Median	4014000000	2019300000	1994700000	737260000	331820000	405440000	985010000	545360000	439650000	1396400000	734680000	661750000	895290000	407460000	487820000	6112	2113	5769	38219;38220;38221;38222;38223;38224;38225;38226;38227;38228;38229	52236;52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250;52251;52252;52253;52254;52255;52256;52257	52252			22	
AWGNNQDGVVASQPAR	0	Unmodified	1668.7968	0.79683052	1919	P60880	SNAP25	Synaptosomal-associated protein 25	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.98	32.403	2	0.00057176	29239	160511_QHF_FH_JSI12i_1	88.021	59.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6113	1919	5770	38230	52258	52258			1	
AWGPGLEGGVVGK	1	Unmodified	1225.6455	0.64552182	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.74	5	4	6					4	1	4	4	6	6	58.465	54.958	2	3.6366E-12	48702	160511_QHF_FH_JSI11i_3	117.02	102.16			0.91087	0.97179	14.373	18	8	Median	1.2039	0.98066	21.067	4	2	Median	0.78929	0.92583	13.363	4	1	Median	0.90871	0.88662	9.1142	5	2	Median	0.94915	1.0426	14.149	5	3	Median	7625000000	3924800000	3700200000	1293900000	594750000	699110000	1452900000	796040000	656890000	2445100000	1247800000	1197300000	2433100000	1286200000	1146800000	6114	1192	5771	38231;38232;38233;38234;38235;38236;38237;38238;38239;38240;38241;38242;38243;38244;38245;38246;38247;38248;38249;38250	52259;52260;52261;52262;52263;52264;52265;52266;52267;52268;52269;52270;52271;52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283;52284;52285;52286;52287;52288;52289;52290;52291	52260			33	
AWGPTSQDTIR	0	Unmodified	1230.5993	0.59929991	4573	Q9BZV1	UBXN6	UBX domain-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.574	35.446	2	0.0015454	30312	160511_QHF_FH_JSI12i_3	62.823	44.151			0.86507	0.88335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86507	0.88335	NaN	1	0	Median	400620000	175390000	225230000	0	0	0	0	0	0	0	0	0	400620000	175390000	225230000	6115	4573	5772	38251	52292	52292			1	
AWHAFFTAAER	0	Unmodified	1305.6255	0.62545508	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									6		3	1	2	62.114	53.241	2;3	1.149E-08	29269	160513_QHF_FH_JSI10Kac_6	125.66	117.14			0.81015	0.96784	1.9805	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81055	0.97063	0.40689	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93155	1.0041	NaN	1	0	Median	192000000	107760000	84242000	0	0	0	170720000	97859000	72863000	0	0	0	21281000	9901800	11379000	6116	5378	5773	38252;38253;38254;38255;38256;38257	52293;52294;52295;52296;52297;52298	52296			6	
AWHFVLSAAR	0	Unmodified	1156.6142	0.61416212	3124	Q6PJ21	SPSB3	SPRY domain-containing SOCS box protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	65.666	56.499	3	0.00025035	30901	160513_QHF_FH_JSI10Kac_6	81.338	68.722			1.1924	1.2504	25.855	4	1	Median	2.4211	2.0142	NaN	1	1	Median	0.95202	1.1358	NaN	1	0	Median	1.2412	1.2361	NaN	1	0	Median	1.1456	1.2649	NaN	1	0	Median	43935000	21982000	21952000	5710800	2361200	3349600	30892000	16116000	14776000	3241500	1611600	1629900	4090000	1893300	2196700	6117	3124	5774	38258;38259;38260;38261;38262	52299;52300;52301;52302;52303;52304	52303			5	
AWIEQEGVTVK	1	Unmodified	1258.6558	0.65575216	2986	Q5VT79	ANXA8L2	Annexin A8-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	49.715	48.731	2	2.5083E-06	42022	160511_QHF_FH_JSI11i_2	112.3	101.14			0.91203	0.92356	18.329	4	0	Median	0.95877	0.81235	NaN	1	0	Median	1.0096	1.2463	NaN	1	0	Median	0.86756	0.89594	NaN	1	0	Median	0.82778	0.95202	NaN	1	0	Median	287590000	138380000	149210000	67028000	33217000	33811000	61552000	30768000	30784000	92890000	42907000	49983000	66118000	31485000	34633000	6118	2986	5775	38263;38264;38265;38266	52305;52306;52307	52306			3	
AWIHTEDNK	1	Unmodified	1112.5251	0.52507234	2483	Q13952	NFYC	Nuclear transcription factor Y subunit gamma	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	16.126	16.143	2	0.0012609	12850	160511_QHF_FH_JSI12i_3	69.825	47.438			0.96371	0.96765	49.704	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2697	1.1814	68.376	2	2	Median	0.96371	0.96765	NaN	1	0	Median	97896000	42852000	55044000	0	0	0	0	0	0	43171000	18956000	24215000	54725000	23896000	30829000	6119	2483	5776	38267;38268;38269	52308;52309;52310	52310			3	
AWITAPVALR	0	Unmodified	1096.6393	0.63931423	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	71.13	70.283	2	7.563E-06	60765	160511_QHF_FH_JSI12i_3	107.01	99.296			1.1308	1.1432	13.432	8	0	Median	1.4249	1.1847	2.0735	2	0	Median	1.0712	1.3034	8.2504	2	0	Median	1.1688	1.1125	0.89049	2	0	Median	0.90926	0.94979	11.358	2	0	Median	644440000	299500000	344940000	117240000	45472000	71768000	120510000	58186000	62320000	205620000	91957000	113670000	201070000	103890000	97183000	6120	2493	5777	38270;38271;38272;38273;38274;38275;38276;38277	52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322	52321			12	
AWITAPVALREGEDLSK	1	Unmodified	1854.984	0.98396259	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		73.262	72.293	3	0.0018608	60568	160511_QHF_FH_JSI10i_3	50.079	33.395			1.2589	1.4673	18.2	3	1	Plateau	2.4224	2.0008	NaN	1	0	Median	1.2589	1.4673	NaN	1	0	Median	1.612	1.4527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118580000	40732000	77850000	28068000	6275600	21793000	37912000	15565000	22347000	52601000	18892000	33710000	0	0	0	6121	2493	5778	38278;38279;38280	52323;52324;52325	52324			3	
AWIYSMLYNSK	1	Unmodified	1374.6642	0.66420836	3488	Q8IZU8	DSEL	Dermatan-sulfate epimerase-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	81.812	73.695	2	3.4423E-11	41368	160513_QHF_FH_JSI10Kac_6	136.63	116.87			0.94658	1.0148	26.692	3	2	Median	NaN	NaN	NaN	0	0	Median	0.68918	0.79623	NaN	1	1	Median	1.3797	1.357	NaN	1	1	Median	0.94658	1.0148	NaN	1	0	Median	122600000	62831000	59773000	0	0	0	60661000	38992000	21669000	44013000	14665000	29348000	17929000	9173500	8756000	6122	3488	5779	38281;38282;38283	52326;52327;52328;52329;52330;52331	52331			6	
AWKPSSK	2	Unmodified	802.43374	0.43373813	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	7.3124	7.0684	3	0.017557	4907	160511_QHF_FH_JSI9i_3	47.082	37.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2673400000	0	2673400000	804400000	0	804400000	610210000	0	610210000	409330000	0	409330000	849440000	0	849440000	6123	2217	5780	38284;38285;38286;38287	52332;52333;52334;52335	52334			4	
AWLIAAVTK	1	Unmodified	971.5804	0.58040237	5457	Q9UPM8	AP4E1	AP-4 complex subunit epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.7	6.13			2						4	2	2	1	1	73.909	67.773	2	0.0097011	57648	160511_QHF_FH_JSI10i_3	50.805	24.202			1.0458	0.98221	31.523	6	2	Median	1.1543	0.98217	2.1289	2	1	Median	0.59044	0.69304	51.483	2	1	Median	1.0091	0.96758	NaN	1	0	Median	1.0838	1.182	NaN	1	0	Median	101120000	52153000	48964000	33340000	14475000	18864000	28716000	17102000	11614000	29910000	15417000	14493000	9151300	5159000	3992400	6124	5457	5781	38288;38289;38290;38291;38292;38293	52336;52337;52338;52339	52336			3	
AWLISQQIPQFEDVK	1	Unmodified	1800.941	0.94103514	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	93.322	93.311	2	0.00038015	80855	160511_QHF_FH_JSI12i_3	94.616	78.726			1.2607	1.2568	10.844	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2259	1.1641	NaN	1	1	Median	1.2965	1.357	NaN	1	1	Median	25363000	9288600	16074000	0	0	0	0	0	0	11312000	5310400	6001700	14051000	3978200	10072000	6125	5752	5782	38294;38295;38296	52340;52341;52342	52342			3	
AWLLSMIQSK	1	Unmodified	1175.6373	0.63726532	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	2	2	86.93	82.867	2	6.6366E-12	40701	160513_QHF_FH_JSI12Kac_6	150.17	117.05			1.0668	1.0117	23.852	9	1	Median	1.1445	0.9952	43.506	3	1	Median	0.77968	0.93132	11.705	2	0	Median	1.0777	1.0161	0.1837	2	0	Median	0.95204	0.98091	23.23	2	0	Median	1540700000	773770000	766890000	424850000	187100000	237750000	416960000	216280000	200680000	411550000	216470000	195080000	287300000	153930000	133370000	6126	5257	5783	38297;38298;38299;38300;38301;38302;38303;38304;38305	52343;52344;52345;52346;52347;52348;52349;52350;52351;52352;52353;52354;52355;52356;52357;52358;52359;52360;52361	52359			19	
AWLLSMIQSK	1	Oxidation (M)	1191.6322	0.63217995	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	75.799	66.357	2	0.014493	34868	160513_QHF_FH_JSI12Kac_6	64.297	31.177			1.6546	1.8018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6546	1.8018	NaN	1	1	Median	11135000	4324000	6810800	0	0	0	0	0	0	0	0	0	11135000	4324000	6810800	6127	5257	5783	38306	52362	52362		2620	1	
AWLQPTGR	0	Unmodified	927.49265	0.49265	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			32.673	31.274	2	0.0023888	26110	160511_QHF_FH_JSI10i_3	80.462	40.92			1.0988	1.0779	0.19965	2	0	Median	1.3263	1.0764	NaN	1	0	Median	0.9104	1.0794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191760000	95796000	95965000	97213000	46217000	50996000	94548000	49579000	44969000	0	0	0	0	0	0	6128	4819	5784	38307;38308	52363;52364;52365	52363			3	
AWLVSSGCPLQVK	1	Unmodified	1443.7544	0.75442035	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		69.047	69.047	2	1.1163E-09	61536	160511_QHF_FH_JSI11i_3	111.65	85.138			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6129	3436	5785	38309	52366	52366			1	
AWLWAEMLK	1	Unmodified	1146.5896	0.58958685	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	93.958	87.737	2	0.00024671	82994	160511_QHF_FH_JSI10i_3	98.392	81.296			1.0712	1.0502	29.61	6	5	Median	1.0712	0.89501	4.049	2	1	Median	1.0092	1.1375	NaN	1	1	Median	2.0577	1.948	NaN	1	1	Median	1.0412	1.0949	17.17	2	2	Median	257990000	120460000	137540000	81561000	39999000	41563000	31335000	10309000	21026000	74771000	29350000	45421000	70327000	40801000	29526000	6130	3350	5786	38310;38311;38312;38313;38314;38315;38316	52367;52368;52369;52370;52371;52372;52373	52367			7	
AWLWAEMLKK	2	Unmodified	1274.6845	0.68454987	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	103.34	103.22	2	0.024815	93834	160511_QHF_FH_JSI12i_1	40.987	13.684			1.107	1.1532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.107	1.1532	NaN	1	0	Median	148460000	76296000	72164000	0	0	0	0	0	0	0	0	0	148460000	76296000	72164000	6131	3350	5787	38317	52374	52374			1	
AWLYLALMQK	1	Unmodified	1235.6737	0.67365083	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	2		2	92.513	87.698	2	1.3277E-07	44570	160513_QHF_FH_JSI9Kac_6	132.69	112.36			1.3396	1.4255	28.805	5	2	Median	1.6743	1.4255	NaN	1	0	Median	1.2991	1.5372	53.356	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2217	1.3123	14.89	2	1	Median	362200000	157670000	204530000	98628000	31746000	66882000	199130000	91169000	107960000	0	0	0	64444000	34756000	29688000	6132	4255	5788	38318;38319;38320;38321;38322	52375;52376;52377;52378;52379	52376			5	
AWMAFMSEAER	0	Unmodified	1327.5689	0.56892776	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	1	2	74.274	70.343	2	5.5671E-08	59979	160511_QHF_FH_JSI10i_3	126.07	122.81			0.90999	1.031	17.416	7	0	Median	1.3147	1.1033	20.097	2	0	Median	0.91815	1.1016	0.037443	2	0	Median	0.84416	0.80673	NaN	1	0	Median	0.80516	0.90148	18.982	2	0	Median	541500000	287390000	254110000	85397000	31489000	53907000	184300000	90635000	93662000	183200000	101940000	81266000	88606000	63330000	25276000	6133	5435	5789	38323;38324;38325;38326;38327;38328;38329	52380;52381;52382;52383;52384;52385;52386	52382			5	
AWMWLASDFSDGDAK	1	Unmodified	1698.7348	0.73480712	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	1	1	3	90.308	85.526	2	6.2094E-17	82985	160511_QHF_FH_JSI12i_3	126.67	91.784			0.97985	1.1322	22.67	3	1	Median	0.96115	0.82943	NaN	1	0	Median	0.97985	1.1322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1855	1.2893	NaN	1	1	Median	98790000	46757000	52034000	38395000	20508000	17888000	54036000	24400000	29635000	0	0	0	6359100	1848800	4510300	6134	1685	5790	38330;38331;38332;38333;38334;38335;38336	52387;52388;52389;52390;52391;52392;52393;52394	52391			7	
AWNAYPYCR	0	Unmodified	1199.5182	0.51821282	1636;2145	Q00169;P48739	PITPNA;PITPNB	Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform	no	no	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	49.011	39.845	2	0.00053598	22050	160513_QHF_FH_JSI10Kac_6	78.496	52.558			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6135	2145;1636	5791	38337;38338	52395;52396	52396			2	
AWNDIKK	2	Unmodified	873.47085	0.47085192	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		4	8						4	5	3	5	3	17.591	15.12	2;3	0.0015112	11886	160511_QHF_FH_JSI12i_3	87.323	59.798			0.95083	0.9289	83.083	16	8	Median	1.0716	0.86938	124.19	5	2	Median	0.33324	0.38314	66.749	3	2	Median	1.2057	1.1329	49.429	5	3	Median	0.85221	0.86606	37.435	3	1	Plateau	12462000000	5889800000	6572500000	1229000000	334740000	894280000	1648300000	1087700000	560580000	3264700000	1317000000	1947700000	6320300000	3150300000	3170000000	6136	1457	5792	38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350;38351;38352;38353;38354	52397;52398;52399;52400;52401;52402;52403;52404;52405;52406;52407;52408;52409;52410;52411;52412;52413;52414;52415;52416	52413			20	
AWNESDLDVAYEK	1	Unmodified	1538.6889	0.68890278	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	59.459	58.724	2	7.6811E-06	53281	160511_QHF_FH_JSI11i_1	129.84	102.51			0.53565	0.53576	24.872	3	3	Plateau	1.0445	0.8352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53565	0.50789	NaN	1	1	Median	0.61295	0.64868	NaN	1	1	Median	150320000	82634000	67688000	24929000	11680000	13249000	0	0	0	65606000	35509000	30097000	59787000	35445000	24342000	6137	3760	5793	38355;38356;38357	52417;52418;52419	52417			3	
AWNTMVLK	1	Unmodified	961.50552	0.50552287	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							2	1		1	52.545	51.439	2	0.0027585	42269	160511_QHF_FH_JSI9i_3	77.674	16.992			1.0852	1.0055	2.8994	4	0	Median	1.2082	0.98336	3.8734	2	0	Median	0.88666	1.0224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98279	1.0003	NaN	1	0	Median	7130100000	3563000000	3567100000	1858000000	844560000	1013500000	1634500000	891570000	742930000	0	0	0	3637600000	1826900000	1810700000	6138	855	5794	38358;38359;38360;38361	52420;52421;52422;52423;52424	52421			5	
AWPHDTIGSLK	1	Unmodified	1223.6299	0.62987176	4484	Q9BVT8	TMUB1	Transmembrane and ubiquitin-like domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	43.624	43.547	2;3	0.0037352	37174	160511_QHF_FH_JSI12i_3	64.297	34.488			1.4467	1.3446	10.198	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3928	1.282	6.7483	2	0	Median	1.4984	1.4985	NaN	1	0	Median	231400000	97890000	133510000	0	0	0	0	0	0	155550000	69253000	86297000	75853000	28637000	47216000	6139	4484	5795	38362;38363;38364	52425;52426;52427;52428	52428			3	
AWQEYYAAASHSYYWNAQR	0	Unmodified	2364.0348	0.034828962	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.085	67.653	3	2.9354E-139	36069	160513_QHF_FH_JSI9Kac_6	269.49	261.31			1.0365	1.0401	9.6303	4	0	Median	1.3672	1.146	NaN	1	0	Median	0.7678	0.91339	NaN	1	0	Median	1.0679	1.0092	NaN	1	0	Median	1.0061	1.0719	NaN	1	0	Median	1091400000	613270000	478150000	192040000	77119000	114920000	741040000	462340000	278710000	75164000	36179000	38985000	83168000	37636000	45532000	6140	5301	5796	38365;38366;38367;38368	52429;52430;52431;52432	52430			4	
AWQGAMDAGAASR	0	Unmodified	1290.5775	0.57751861	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							1	3	1	3	30.988	30.309	2	6.2307E-07	25579	160511_QHF_FH_JSI12i_2	92.611	79.032			1.1295	1.1608	30.8	6	2	Median	1.0673	0.91653	NaN	1	0	Median	1.0431	1.225	14.544	2	1	Median	1.2156	1.2191	NaN	1	0	Median	1.4385	1.5652	50.52	2	1	Median	209040000	103120000	105930000	24671000	11164000	13507000	45216000	24962000	20254000	68249000	32263000	35985000	70909000	34729000	36181000	6141	2501	5797	38369;38370;38371;38372;38373;38374;38375;38376	52433;52434;52435;52436;52437;52438;52439	52434			7	
AWQTFIIDLLLHCHSK	1	Unmodified	1981.0244	0.024387617	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.342	86.949	4	1.4282E-07	48938	160513_QHF_FH_JSI11Kac_6	108.34	81.973			1.0409	1.0707	31.449	4	0	Median	0.88373	0.75985	NaN	1	0	Median	0.84279	0.98991	NaN	1	0	Median	1.2261	1.1581	NaN	1	0	Median	1.5189	1.613	NaN	1	0	Median	598700000	283360000	315340000	73512000	30678000	42834000	171680000	99208000	72474000	221680000	100760000	120920000	131830000	52714000	79115000	6142	3921	5798	38377;38378;38379;38380	52440;52441;52442;52443;52444	52440			5	
AWQYLSNSK	1	Unmodified	1095.5349	0.53490874	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	37.143	37.062	2	0.00020855	31638	160511_QHF_FH_JSI12i_3	101.64	81.857			0.88743	0.87663	43.437	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67542	0.6448	NaN	1	1	Median	1.166	1.1918	NaN	1	1	Median	110720000	57639000	53086000	0	0	0	0	0	0	42522000	24676000	17847000	68203000	32964000	35239000	6143	2836	5799	38381;38382	52445;52446	52446			2	
AWRDPDEPVLLEEPVVLALAEK	1	Unmodified	2488.3213	0.32134072	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			102.78	102.64	3	0.00042364	85258	160511_QHF_FH_JSI10i_3	49.089	34.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6144	1054	5800	38383	52447	52447			1	
AWSHFLLTYK	1	Unmodified	1264.6604	0.66044361	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	72.962	63.791	3	0.001091	33883	160513_QHF_FH_JSI9Kac_6	49.189	16.666			0.74992	0.64121	15.32	3	0	Median	0.76172	0.64121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64507	0.63399	NaN	1	0	Median	0.74992	0.8312	NaN	1	0	Median	71612000	41017000	30596000	31670000	21309000	10361000	0	0	0	25807000	11591000	14215000	14135000	8116100	6019100	6145	4997	5801	38384;38385;38386	52448;52449	52449			1	
AWSHFLLTYKPK	2	Unmodified	1489.8082	0.80817048	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	67.622	58.654	3;4	6.8755E-07	31790	160513_QHF_FH_JSI10Kac_6	113.65	105.92			0.82923	0.88092	16.18	7	2	Median	1.0316	0.87531	17.315	2	0	Median	0.79925	0.93688	6.579	2	1	Median	0.90667	0.87175	NaN	1	0	Median	0.69716	0.73867	24.908	2	1	Median	631000000	337170000	293820000	132510000	74244000	58261000	255930000	137550000	118380000	118810000	57999000	60809000	123750000	67377000	56377000	6146	4997	5802	38387;38388;38389;38390;38391;38392;38393	52450;52451;52452;52453;52454;52455;52456;52457;52458;52459;52460;52461;52462;52463	52463			14	
AWSPVFR	0	Unmodified	861.44972	0.44972255	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				49.995	48.391	2	0.026498	39960	160511_QHF_FH_JSI9i_3	54.056	21.085			1.3667	1.0926	NaN	1	0	Median	1.3667	1.0926	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	242220000	105210000	137010000	242220000	105210000	137010000	0	0	0	0	0	0	0	0	0	6147	2358	5803	38394	52464	52464			1	
AWSYAMQLK	1	Unmodified	1096.5376	0.53755128	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.69		2	2						3	1	2	1	3	60.852	56.653	2	1.4042E-06	48612	160511_QHF_FH_JSI12i_3	132.57	113.84			1.0362	1.1199	10.838	7	1	Median	1.2212	1.0387	NaN	1	0	Median	0.87744	1.051	17.132	2	1	Median	1.2341	1.159	NaN	1	0	Median	1.0362	1.1199	12.669	3	0	Median	351510000	172350000	179160000	26093000	12206000	13887000	88491000	49164000	39327000	58333000	27668000	30665000	178590000	83310000	95281000	6148	5295	5804	38395;38396;38397;38398;38399;38400;38401	52465;52466;52467;52468;52469;52470;52471;52472;52473	52471			9	
AWTQVLLGQAEDK	1	Unmodified	1457.7514	0.75144346	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	3	2	68.897	68.228	2;3	5.7746E-22	59112	160511_QHF_FH_JSI12i_3	208.17	188.41			1.3717	1.3785	42.151	8	4	Median	1.5506	1.3212	NaN	1	1	Median	1.3717	1.5998	15.059	2	1	Median	1.1521	1.0868	46.265	3	1	Median	1.7855	1.8518	81.686	2	1	Median	1315000000	519310000	795690000	112780000	57812000	54965000	161390000	80229000	81161000	511340000	200820000	310510000	529500000	180450000	349060000	6149	2517	5805	38402;38403;38404;38405;38406;38407;38408;38409	52474;52475;52476;52477;52478;52479;52480;52481;52482	52482			8	
AWTVEQLR	0	Unmodified	1001.5294	0.52942943	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	47.499	46.804	2	0.00024028	40275	160511_QHF_FH_JSI11i_2	117.17	90.567			1.2403	1.256	13.736	6	1	Median	1.4134	1.2174	NaN	1	0	Median	0.77684	0.95711	NaN	1	0	Median	1.1989	1.1729	15.652	2	0	Median	1.2403	1.3182	2.4297	2	1	Median	2456200000	1219400000	1236800000	359730000	129440000	230290000	443220000	270910000	172310000	1048400000	510600000	537830000	604810000	308440000	296370000	6150	2158	5806	38410;38411;38412;38413;38414;38415;38416	52483;52484;52485;52486;52487;52488;52489;52490;52491;52492	52489			10	
AWTVEQLRSEQLPK	1	Unmodified	1683.8944	0.8944193	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		59.763	58.78	3	0.0018568	49139	160511_QHF_FH_JSI10i_3	40.941	29.997			1.5116	1.4396	6.3489	5	0	Median	1.6621	1.3837	8.7785	2	0	Median	1.1768	1.4215	1.7909	2	0	Median	1.6118	1.5437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	581950000	228570000	353370000	69554000	25209000	44345000	279170000	130010000	149160000	233220000	73355000	159860000	0	0	0	6151	2158	5807	38417;38418;38419;38420;38421	52493;52494;52495;52496;52497;52498	52495			5	
AWTVLTEYYK	1	Unmodified	1272.639	0.63903946	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		4							5	2	3	2	2	75.702	70.524	2	2.8946E-14	36173	160513_QHF_FH_JSI12Kac_6	159.37	131.89			0.8127	0.91367	22.437	9	6	Median	1.1986	1.0368	3.5255	2	1	Median	0.60277	0.71484	31.518	3	2	Median	1.0028	0.93404	33.007	2	2	Median	0.80848	0.88309	4.8142	2	1	Median	575700000	309600000	266100000	107030000	52552000	54477000	224870000	135730000	89133000	124290000	67563000	56725000	119520000	53750000	65769000	6152	315	5808	38422;38423;38424;38425;38426;38427;38428;38429;38430	52499;52500;52501;52502;52503;52504;52505;52506;52507;52508	52507			10	
AWVEEVRK	1	Unmodified	1015.5451	0.5450795	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		23.017	23.017	3	0.012704	19491	160511_QHF_FH_JSI11i_3	40.002	11.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6153	4393	5809	38431	52509	52509			1	
AWVGGVGNYK	1	Unmodified	1049.5294	0.52942943	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3	1	1	3	2	44.75	39.698	2	1.7995E-05	34041	160511_QHF_FH_JSI12i_3	98.997	80.214			1.1722	1.2642	11.098	6	0	Median	1.8135	1.5086	NaN	1	0	Median	1.1358	1.2921	NaN	1	0	Median	1.1722	1.1232	1.4161	2	0	Median	1.2086	1.2735	4.1225	2	0	Median	593260000	303830000	289440000	5723500	2160400	3563100	158700000	87865000	70834000	172770000	75613000	97156000	256070000	138190000	117880000	6154	286	5810	38432;38433;38434;38435;38436;38437;38438	52510;52511;52512;52513;52514;52515;52516;52517;52518	52517			7	
AWWFPIFYFFEK	1	Unmodified	1679.8177	0.81767253	3671	Q8NHU3	SGMS2	Phosphatidylcholine:ceramide cholinephosphotransferase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.72	96.003	2	7.5169E-08	56713	160513_QHF_FH_JSI10Kac_6	107.83	75.333			0.91778	1.0671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91778	1.0671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61227000	34546000	26681000	0	0	0	61227000	34546000	26681000	0	0	0	0	0	0	6155	3671	5811	38439	52519	52519			1	
AWYGLGQTYEILK	1	Unmodified	1540.7926	0.79257999	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	2	3	86.489	84.746	2	4.401E-05	75007	160511_QHF_FH_JSI12i_3	113.93	106.36			0.98017	0.91696	13.821	7	2	Median	0.98017	0.85906	NaN	1	0	Median	0.69437	0.85976	NaN	1	1	Median	0.93751	0.9368	3.0265	2	1	Median	1.0185	1.0857	18.389	3	0	Median	193940000	99653000	94290000	18385000	9717200	8667600	23920000	12796000	11124000	66107000	36166000	29940000	85532000	40973000	44559000	6156	5350	5812	38440;38441;38442;38443;38444;38445;38446	52520;52521;52522;52523;52524;52525;52526;52527;52528	52526			8	
AWYIQYVK	1	Unmodified	1069.5597	0.55966693	4883	Q9NP71	MLXIPL	Carbohydrate-responsive element-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	71.376	62.558	2	0.0011768	34339	160513_QHF_FH_JSI10Kac_6	101.69	84.595			0.93727	1.0182	4.5153	4	0	Linear	1.1219	0.94846	NaN	1	0	Median	0.86653	1.0232	NaN	1	0	Median	1.0138	0.98274	NaN	1	0	Median	0.84035	0.92175	NaN	1	0	Median	91821000	47669000	44152000	17048000	8308900	8738800	34781000	19325000	15455000	26805000	12713000	14093000	13187000	7322200	5864800	6157	4883	5813	38447;38448;38449;38450	52529;52530	52529			2	
AWYPLGR	0	Unmodified	861.44972	0.44972255	1602;3708	Q8TCJ2;P46977	STT3B;STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B;Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	49.116	48.263	2	0.0093014	42520	160511_QHF_FH_JSI11i_3	69.39	24.779			0.95657	0.98187	12.484	4	1	Median	1.3667	1.0926	NaN	1	0	Median	0.7813	0.91517	NaN	1	0	Median	1.1325	1.0534	NaN	1	1	Median	0.80796	0.83514	NaN	1	0	Median	1347500000	673330000	674180000	242220000	105210000	137010000	266480000	140760000	125730000	388750000	186480000	202270000	450050000	240880000	209170000	6158	3708;1602	5814	38451;38452;38453;38454;38455	52531;52532;52533;52534;52535;52536	52532			6	
AYAALAALEK	1	Unmodified	1019.5651	0.56514624	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.45	3	4	5				2	8	2	5	6	6	7	59.202	53.564	2	2.0955E-09	48889	160511_QHF_FH_JSI9i_2	130.75	94.352			0.99446	0.98135	49.114	24	5	Median	1.2748	1.098	81.704	5	2	Median	0.80225	0.96756	25.641	6	0	Median	0.97967	0.96623	17.835	6	1	Median	0.94879	1.0517	55.463	7	2	Median	3427500000	1728600000	1699000000	594580000	224580000	370000000	713580000	391780000	321800000	1146400000	605490000	540950000	972920000	506710000	466210000	6159	2325	5815	38456;38457;38458;38459;38460;38461;38462;38463;38464;38465;38466;38467;38468;38469;38470;38471;38472;38473;38474;38475;38476;38477;38478;38479	52537;52538;52539;52540;52541;52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556;52557;52558;52559;52560;52561;52562;52563;52564;52565	52552			28	
AYAALTDEESRK	1	Unmodified	1352.6572	0.65720872	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							2	3	5	4	21.118	20.562	2;3	6.4747E-43	16732	160511_QHF_FH_JSI12i_3	183.99	159.9			0.99147	0.95559	25.414	13	4	Median	1.0409	0.89588	2.1026	2	0	Median	1.0343	1.2727	12.333	2	0	Median	1.3372	1.2626	28.919	5	2	Linear	0.93709	0.9762	25.135	4	2	Median	1295300000	672250000	623090000	175870000	83789000	92081000	229870000	115140000	114730000	476320000	232690000	243630000	413280000	240630000	172650000	6160	5285	5816	38480;38481;38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492;38493	52566;52567;52568;52569;52570;52571;52572;52573;52574;52575;52576;52577;52578;52579;52580;52581;52582;52583;52584	52582			19	
AYAANSHQGQMLAQYIESFTQGSIEAHK	1	Unmodified	3079.4458	0.44578274	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		98.764	98.618	4	1.1246E-16	86441	160511_QHF_FH_JSI11i_3	114.2	107.97			0.98367	0.9251	26.769	6	4	Median	1.1029	0.89434	10.835	2	0	Median	1.0845	1.2711	24.884	2	2	Median	0.84497	0.78109	17.875	2	2	Median	NaN	NaN	NaN	0	0	Median	169540000	82941000	86602000	52527000	21724000	30804000	34298000	13404000	20895000	82717000	47813000	34903000	0	0	0	6161	5119	5817	38494;38495;38496;38497;38498;38499	52585;52586;52587;52588;52589;52590;52591;52592	52586			8	
AYAANSHQGQMLAQYIESFTQGSIEAHK	1	Oxidation (M)	3095.4407	0.44069737	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				93.148	92.08	4	0.00064161	75260	160511_QHF_FH_JSI9i_3	37.44	31.346			1.5099	1.2658	NaN	1	1	Median	1.5099	1.2658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15616000	3915300	11700000	15616000	3915300	11700000	0	0	0	0	0	0	0	0	0	6162	5119	5817	38500	52593	52593		2583	1	
AYAAVLYIDPR	0	Unmodified	1250.6659	0.66592292	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	0				By MS/MS	15.5	0.5								1	1				2	75.623	65.079	2	0.0012316	34229	160513_QHF_FH_JSI12Kac_6	79.474	55.385			1.1923	1.2655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1923	1.2655	NaN	1	1	Median	2090000	869770	1220200	0	0	0	0	0	0	0	0	0	2090000	869770	1220200	6163	5753	5818	38501;38502	52594;52595	52595			2	
AYADFYR	0	Unmodified	904.40792	0.40791731	938	P09669	COX6C	Cytochrome c oxidase subunit 6C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.52	1	5	2				1	4	2	4	3	4	4	38.177	32.882	2	0.0035456	18558	160513_QHF_FH_JSI11Kac_5	100.07	81.688			0.99708	1.0156	12.483	14	2	Median	1.1528	0.96163	12.612	4	0	Median	0.91508	1.1334	19.757	3	0	Plateau	1.1589	1.1421	7.8615	3	2	Median	0.90539	1.0698	6.9846	4	0	Linear	2313100000	1236900000	1076200000	465790000	220810000	244980000	429350000	274450000	154910000	827090000	400820000	426270000	590830000	340810000	250030000	6164	938	5819	38503;38504;38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517	52596;52597;52598;52599;52600;52601;52602;52603;52604;52605;52606;52607;52608;52609;52610	52605			15	
AYADFYRNYDVMK	1	Unmodified	1654.745	0.74497787	938	P09669	COX6C	Cytochrome c oxidase subunit 6C	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	67.38	58.537	3	0.0011929	30547	160513_QHF_FH_JSI12Kac_6	63.181	45.042			0.34432	0.38213	12.971	2	1	Median	NaN	NaN	NaN	0	0	Median	0.29628	0.34865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40015	0.41884	NaN	1	0	Median	81418000	59253000	22165000	0	0	0	48785000	39026000	9759300	0	0	0	32633000	20227000	12406000	6165	938	5820	38518;38519	52611;52612	52611			2	
AYADSYYYEDGGMK	1	Unmodified	1631.645	0.64498906	3408	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			43.655	43.237	2	6.4622E-10	38856	160511_QHF_FH_JSI10i_1	108.35	101.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6166	3408	5821	38520	52613	52613			1	
AYAFHQK	1	Unmodified	863.42899	0.42898711	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			5							1	1	2	1	9.7759	9.5398	3	0.004599	6856	160511_QHF_FH_JSI12i_3	58.246	44.667			1.0993	1.0896	30.816	5	2	Median	1.6801	1.3661	NaN	1	0	Median	0.95151	1.0896	NaN	1	0	Median	1.5068	1.4171	45.106	2	2	Median	0.87021	0.88085	NaN	1	0	Median	469140000	210960000	258190000	62929000	17160000	45769000	59616000	32724000	26892000	180960000	76710000	104250000	165640000	84362000	81281000	6167	4761	5822	38521;38522;38523;38524;38525	52614;52615;52616;52617	52617			4	
AYAFVHTGDNSR	0	Unmodified	1336.616	0.61601261	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	2	2	4	2	26.572	23.349	2;3	4.9842E-05	19788	160511_QHF_FH_JSI11i_3	81.431	76.278			1.0487	1.0804	11.814	9	3	Median	1.4268	1.1884	NaN	1	0	Median	0.89016	1.0364	5.8738	2	0	Median	1.2429	1.1587	10.86	4	2	Median	0.87731	0.93887	3.949	2	1	Median	382300000	181920000	200380000	12839000	6038300	6800200	59334000	28522000	30812000	212650000	92763000	119890000	97479000	54595000	42884000	6168	5351	5823	38526;38527;38528;38529;38530;38531;38532;38533;38534;38535	52618;52619;52620;52621;52622;52623;52624;52625;52626;52627	52619			9	
AYALAFAER	0	Unmodified	1010.5185	0.5185304	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.31	1	4	4						2	3	4	2	2	52.801	50.501	2	0.00025368	44484	160511_QHF_FH_JSI11i_3	97.798	74.779			0.51395	0.62275	68.864	11	10	Median	0.46381	0.4021	89.989	3	3	Median	0.33653	0.40671	82.468	4	4	Median	0.62413	0.60492	33.531	2	2	Median	0.68029	0.7155	16.286	2	1	Median	3634800000	2410700000	1224000000	540700000	403350000	137340000	1036000000	791940000	244090000	1050100000	654910000	395200000	1007900000	560530000	447380000	6169	1747	5824	38536;38537;38538;38539;38540;38541;38542;38543;38544;38545;38546	52628;52629;52630;52631;52632;52633;52634;52635;52636;52637;52638;52639	52628			12	
AYALLLQHLPVLVWLPR	0	Unmodified	2001.1928	0.19277357	4526	Q9BXS9	SLC26A6	Solute carrier family 26 member 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.401	88.982	3	3.6586E-70	53102	160513_QHF_FH_JSI10Kac_6	204.37	177.9			0.93892	0.9419	4.2365	4	0	Median	1.1442	0.99623	NaN	1	0	Median	0.75103	0.8984	NaN	1	0	Median	0.9866	0.93865	NaN	1	0	Median	0.89354	0.94516	NaN	1	0	Median	1419500000	686750000	732740000	293450000	124210000	169240000	531690000	300210000	231480000	313100000	123010000	190090000	281260000	139320000	141940000	6170	4526	5825	38547;38548;38549;38550	52640;52641;52642;52643;52644;52645	52645			6	
AYAPGGPAYQPVVEAFGTDILHK	1	Unmodified	2400.2114	0.21139634	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	2	2	3	96.181	95.89	3	8.1361E-48	83081	160511_QHF_FH_JSI12i_3	199.61	191.22			1.1176	1.0915	10.173	8	2	Median	1.2364	1.0593	2.9526	2	1	Median	1.0555	1.2507	3.123	2	1	Median	1.0859	1.0635	4.9629	2	0	Median	1.1386	1.205	15.626	2	0	Median	1632000000	832220000	799820000	267530000	124530000	142990000	318830000	160710000	158120000	499220000	269360000	229860000	546460000	277610000	268850000	6171	2346	5826	38551;38552;38553;38554;38555;38556;38557;38558;38559;38560	52646;52647;52648;52649;52650;52651;52652;52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663;52664;52665;52666;52667;52668;52669;52670;52671;52672;52673	52672			28	
AYAQGISR	0	Unmodified	864.44537	0.44536545	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	6.08	3	4	2					4		2	3	4	4	13.943	10.838	2	0.00056048	9630	160511_QHF_FH_JSI9i_2	104.21	43.421			0.96168	0.99165	8.6436	13	0	Median	1.2752	1.085	1.0187	2	0	Median	0.83615	1.0004	8.9332	3	0	Median	0.97692	0.98182	8.4936	4	0	Median	0.89777	0.96778	10.879	4	0	Median	4032600000	2048900000	1983700000	501290000	214890000	286410000	787590000	412930000	374660000	1505500000	748710000	756770000	1238200000	672370000	565820000	6172	517	5827	38561;38562;38563;38564;38565;38566;38567;38568;38569;38570;38571;38572;38573	52674;52675;52676;52677;52678;52679;52680;52681;52682;52683;52684;52685;52686;52687;52688	52679			15	
AYAQQLADWAR	0	Unmodified	1291.6309	0.63093439	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	55.704	55.073	2	0.0001519	48340	160511_QHF_FH_JSI9i_2	140.05	119.72			1.6248	1.5101	21.803	2	1	Median	1.5048	1.2944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7544	1.7619	NaN	1	0	Median	195140000	84065000	111070000	107980000	43170000	64809000	0	0	0	0	0	0	87156000	40895000	46261000	6173	5378	5828	38574;38575	52689;52690	52689			1	
AYAQQLTEWAR	0	Unmodified	1335.6571	0.65714914	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	56.035	55.005	2	3.9621E-06	47109	160511_QHF_FH_JSI12i_2	116.52	86.125			1.2121	1.3611	10.499	5	5	Median	1.8446	1.591	NaN	1	1	Median	1.1837	1.4666	NaN	1	1	Median	1.2543	1.2633	NaN	1	1	Median	1.1567	1.297	6.8212	2	2	Median	434670000	184520000	250150000	97107000	32084000	65024000	79876000	33663000	46213000	129100000	58234000	70862000	128590000	60540000	68054000	6174	5435	5829	38576;38577;38578;38579;38580	52691;52692;52693;52694;52695	52692			5	
AYASNHPIMK	1	Unmodified	1130.5543	0.55426398	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2		2	2	3	15.162	13.054	2;3	2.5419E-09	10103	160511_QHF_FH_JSI12i_3	128.38	104.43			0.97868	1.0611	25.513	7	3	Median	NaN	NaN	NaN	0	0	Median	0.94547	1.0996	5.0307	2	1	Median	1.0881	0.99305	13.198	2	0	Median	0.97868	1.0007	40.105	3	2	Median	538810000	257850000	280960000	0	0	0	51870000	25173000	26697000	146150000	71232000	74918000	340790000	161440000	179340000	6175	594	5830	38581;38582;38583;38584;38585;38586;38587	52696;52697;52698;52699;52700;52701;52702	52698			7	
AYAVGDVEK	1	Unmodified	950.47091	0.4709115	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.304	24.143	2	0.010365	21126	160511_QHF_FH_JSI11i_1	59.35	39.563			0.87125	0.85253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87125	0.85253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84337000	36382000	47955000	0	0	0	0	0	0	84337000	36382000	47955000	0	0	0	6176	5350	5831	38588	52703	52703			1	
AYAYLFK	1	Acetyl (Protein N-term)	916.46945	0.46945494	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.38	7				1	2	4	4		3	5	6	4	87.142	81.6	1;2	0.0011086	79229	160511_QHF_FH_JSI11i_1	50.039	30.562			0.99067	0.97719	7.7882	15	0	Median	1.1522	0.97719	4.1227	3	0	Median	0.91767	1.0844	7.7185	4	0	Median	1.0099	0.96655	4.4646	5	0	Median	0.89521	0.96999	6.2682	3	0	Median	1052000000	544210000	507800000	253300000	123470000	129820000	117740000	58041000	59696000	378070000	198770000	179300000	302900000	163920000	138980000	6177	1930	5832	38589;38590;38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602;38603;38604;38605;38606	52704;52705;52706;52707;52708;52709;52710;52711;52712;52713;52714;52715;52716;52717;52718;52719;52720;52721;52722;52723;52724;52725;52726;52727;52728;52729;52730;52731;52732;52733;52734;52735	52707			32	
AYDASLAMLMR	0	Unmodified	1240.5944	0.59441423	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.57	74.715	2	0.0054863	64681	160511_QHF_FH_JSI12i_2	53.327	45.107			1.1987	1.3285	14.625	4	1	Median	1.7009	1.4921	NaN	1	1	Median	1.1329	1.4143	NaN	1	0	Median	1.2683	1.2479	NaN	1	0	Median	1.0163	1.0741	NaN	1	0	Median	139940000	64710000	75229000	27421000	10475000	16946000	40461000	21164000	19297000	48497000	21419000	27078000	23560000	11651000	11909000	6178	4946	5833	38607;38608;38609;38610	52736;52737;52738;52739;52740;52741	52737			5	
AYDATHLVK	1	Unmodified	1016.5291	0.52909508	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.18		9	1					4	1	5	4	3	3	29.469	25.684	2;3	0.00011911	15031	160513_QHF_FH_JSI11Kac_5	81.338	65.135			1.1632	1.1516	27.161	15	1	Median	1.3858	1.2499	16.042	5	0	Median	1.0698	1.2764	46.577	4	1	Median	1.3441	1.3797	16.229	3	0	Median	0.90678	0.99145	10.834	3	0	Median	1758300000	846890000	911390000	392940000	153790000	239140000	408630000	195810000	212820000	661530000	345930000	315600000	295180000	151360000	143830000	6179	979	5834	38611;38612;38613;38614;38615;38616;38617;38618;38619;38620;38621;38622;38623;38624;38625	52742;52743;52744;52745;52746;52747;52748;52749;52750;52751;52752;52753;52754;52755;52756;52757;52758;52759	52755			18	
AYDGTTYLPGIVGLNNIK	1	Unmodified	1907.9993	0.9992783	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	91.55	91.141	2;3	6.8371E-22	82606	160511_QHF_FH_JSI10i_1	208.72	184.97			0.68418	0.72952	26.731	9	5	Median	0.90159	0.74356	1.6619	2	0	Median	0.46419	0.53305	2.5232	2	2	Median	0.54712	0.52354	50.325	2	1	Median	0.68418	0.72952	26.14	3	2	Median	303350000	198280000	105070000	33092000	18316000	14776000	102530000	69404000	33121000	95847000	63641000	32207000	71890000	46920000	24970000	6180	2856	5835	38626;38627;38628;38629;38630;38631;38632;38633;38634	52760;52761;52762;52763;52764;52765;52766;52767;52768;52769;52770;52771;52772	52767			13	
AYDHLFK	1	Unmodified	892.4443	0.44430282	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	29.135	28.226	3	0.0019824	23555	160511_QHF_FH_JSI11i_2	79.116	32.049			0.97039	1.0734	38.772	4	1	Median	0.75595	0.64339	NaN	1	1	Median	0.76649	0.95675	NaN	1	0	Median	1.2285	1.2043	NaN	1	0	Median	1.4459	1.6119	NaN	1	0	Median	442560000	225790000	216760000	84452000	44452000	40000000	108160000	56542000	51616000	152650000	80164000	72488000	97295000	44634000	52660000	6181	1730	5836	38635;38636;38637;38638;38639	52773;52774;52775;52776;52777;52778;52779;52780	52778			8	
AYDIAGSTK	1	Unmodified	924.45526	0.45526144	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			19.398	19.14	2	0.0020035	16462	160511_QHF_FH_JSI10i_1	67.993	41.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6182	999	5837	38640	52781	52781			1	
AYDSHSLK	1	Unmodified	919.43995	0.43994572	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		9.0874	8.889	2	0.018546	6502	160511_QHF_FH_JSI11i_2	47.574	24.645			1.4844	1.5224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4844	1.5224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94380000	37920000	56460000	0	0	0	0	0	0	94380000	37920000	56460000	0	0	0	6183	5042	5838	38641	52782	52782			1	
AYDYLVQNTSFANK	1	Unmodified	1632.7784	0.77838649	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1				3	1	1	60.246	59.754	2;3	3.2624E-05	54156	160511_QHF_FH_JSI11i_1	140.14	102.8			0.69088	0.92527	15.552	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.63967	0.74322	NaN	1	1	Median	0.98546	0.95924	NaN	1	1	Median	0.69088	0.7238	NaN	1	1	Median	212960000	119190000	93771000	0	0	0	49076000	34295000	14782000	125880000	64959000	60923000	38002000	19936000	18066000	6184	1316	5839	38642;38643;38644;38645;38646	52783;52784;52785;52786;52787	52783			5	
AYEAAASALQIATHTAFVAK	1	Unmodified	2033.0582	0.058190166	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		1	2						1	1	1	1	1	83.954	79.349	2;3	2.0494E-45	40192	160513_QHF_FH_JSI9Kac_6	184.7	170.39			2.0963	2.1263	99.317	2	1	Median	1.2566	1.0535	NaN	1	0	Median	3.4971	4.2915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	402800000	96805000	306000000	179630000	57384000	122250000	223170000	39421000	183740000	0	0	0	0	0	0	6185	1526	5840	38647;38648;38649;38650	52788;52789;52790;52791	52790			4	
AYEDGCK	1	Unmodified	841.32762	0.32761808	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.3424	5.0007	2	0.014953	2980	160511_QHF_FH_JSI12i_1	64.803	54.892			1.2689	1.303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2689	1.303	NaN	1	1	Median	187960000	99445000	88513000	0	0	0	0	0	0	0	0	0	187960000	99445000	88513000	6186	1386	5841	38651	52792	52792			1	
AYEFAER	0	Unmodified	884.40283	0.40283194	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.04	3	4	1				2	2		2	2	4	4	26.57	22.977	2	0.0024983	19294	160511_QHF_FH_JSI11i_2	110.61	48.614			1.0368	1.0991	16.565	12	0	Median	1.181	0.97285	19.433	2	0	Median	1.0463	1.2528	13.468	2	0	Median	1.1913	1.1865	16.942	4	0	Median	0.92639	0.99464	9.3807	4	0	Median	3508000000	1740800000	1767200000	479980000	225390000	254590000	878170000	444510000	433660000	1164500000	583650000	580820000	985350000	487230000	498130000	6187	1807;2155	5842	38652;38653;38654;38655;38656;38657;38658;38659;38660;38661;38662;38663	52793;52794;52795;52796;52797;52798;52799;52800;52801;52802;52803;52804;52805;52806;52807;52808;52809	52803			17	
AYEKPPEK	2	Unmodified	960.49165	0.49164694	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							3	2	2	3	8.078	7.7232	2;3	0.0078436	5684	160511_QHF_FH_JSI10i_1	42.19	23.096			1.1252	1.1603	18.759	10	1	Median	1.3826	1.4759	15.628	3	1	Plateau	0.96105	1.1312	10.663	2	0	Median	1.173	1.1603	2.9267	2	0	Median	0.84501	0.88525	21.205	3	0	Median	1869800000	914880000	954870000	567780000	268270000	299510000	462490000	233550000	228940000	413410000	195740000	217670000	426070000	217320000	208750000	6188	2324	5843	38664;38665;38666;38667;38668;38669;38670;38671;38672;38673	52810;52811;52812;52813;52814;52815;52816;52817;52818;52819	52813			10	
AYELEQNVVK	1	Unmodified	1191.6136	0.61355299	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.461	40.841	2	0.0079445	37095	160511_QHF_FH_JSI12i_1	52.126	26.552			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6189	1577	5844	38674	52820	52820			1	
AYELMLGFYGIR	0	Unmodified	1431.7221	0.72205759	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.517	82.799	2	0.00014719	46845	160513_QHF_FH_JSI10Kac_6	94.692	80.485			0.74012	0.87834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74012	0.87834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89628000	52297000	37332000	0	0	0	89628000	52297000	37332000	0	0	0	0	0	0	6190	5166	5845	38675	52821	52821			1	
AYFAVFDGHGGVDAAR	0	Unmodified	1651.7743	0.77430417	1668	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	60.398	59.801	3	0.00012003	50095	160511_QHF_FH_JSI10i_3	80.387	71.337			1.8657	1.8448	25.729	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0343	1.1697	NaN	1	1	Median	1.92	1.7751	NaN	1	0	Median	1.8657	1.8707	NaN	1	0	Median	219650000	67635000	152010000	0	0	0	19916000	8952300	10963000	94079000	26857000	67222000	105650000	31826000	73827000	6191	1668	5846	38676;38677;38678	52822;52823	52822			1	
AYFDLQTHVIQVPQGK	1	Unmodified	1842.9628	0.96283322	3758	Q8WUB8	PHF10	PHD finger protein 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.855	69.706	3	5.0894E-05	62152	160511_QHF_FH_JSI11i_3	76.341	67.294			1.0972	1.0545	8.0888	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0982	0.99587	NaN	1	0	Median	1.0961	1.1166	NaN	1	0	Median	152870000	69484000	83387000	0	0	0	0	0	0	52035000	22719000	29316000	100840000	46765000	54071000	6192	3758	5847	38679;38680	52824;52825;52826;52827;52828	52826			5	
AYFELSEYMQAER	0	Unmodified	1635.7239	0.72390808	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	78.209	77.291	2	0.0019525	67917	160511_QHF_FH_JSI11i_2	85.958	76.005			0.6653	0.6851	3.6923	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72625	0.70323	NaN	1	1	Median	0.60947	0.66745	NaN	1	1	Median	29853000	17652000	12201000	0	0	0	0	0	0	17490000	10282000	7207200	12363000	7369400	4993900	6193	1347	5848	38681;38682	52829;52830	52830			2	
AYFETEK	1	Unmodified	886.40725	0.40724861	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.56	3	4				1	2			2	1	4	3	23.559	20.548	2	0.012569	17874	160511_QHF_FH_JSI12i_1	69.176	37.886			1.2153	1.1263	36.557	10	0	Median	1.5809	1.3118	32.061	2	0	Median	1.4043	1.7445	NaN	1	0	Median	1.5535	1.5334	46.927	4	0	Linear	0.96689	1.0378	23.873	3	0	Median	1942700000	843030000	1099600000	511530000	197920000	313610000	167910000	93366000	74548000	652430000	280510000	371920000	610800000	271230000	339570000	6194	1069	5849	38683;38684;38685;38686;38687;38688;38689;38690;38691;38692	52831;52832;52833;52834;52835;52836;52837;52838;52839;52840;52841	52833			11	
AYFETEKK	2	Acetyl (K)	1056.5128	0.51277632	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	37.916	28.302	2	0.0015068	17453	160513_QHF_FH_JSI11Kac_4	119.29	69.164			0.24926	0.23995	144.84	3	1	Median	NaN	NaN	NaN	0	0	Median	1.5357	1.7879	NaN	1	0	Median	0.24926	0.23995	NaN	1	0	Median	0.1009	0.10743	NaN	1	1	Median	58567000	43544000	15024000	0	0	0	10743000	4170200	6573100	42510000	34700000	7809900	5314600	4673800	640770	6195	1069	5850	38693;38694;38695	52842;52843	52842	903;904		2	
AYFHLLNQIAPK	1	Unmodified	1413.7769	0.77687035	1039;2551	P13797;Q14651	PLS3;PLS1	Plastin-3;Plastin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		2	8						8	4	5	4	5	70.025	65.672	2;3	1.3566E-75	35571	160513_QHF_FH_JSI10Kac_6	237.21	201.27			0.89259	0.96812	19.133	18	1	Median	1.1642	0.94476	4.6786	4	0	Median	0.85627	1.004	4.8305	5	0	Median	0.95643	0.92343	10.911	4	0	Median	0.82866	0.83947	33.133	5	1	Median	14957000000	7336600000	7620000000	3228200000	1379500000	1848600000	3703700000	1997400000	1706200000	3542000000	1692300000	1849700000	4482700000	2267300000	2215400000	6196	1039;2551	5851	38696;38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710;38711;38712;38713	52844;52845;52846;52847;52848;52849;52850;52851;52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865;52866;52867;52868;52869;52870;52871;52872;52873;52874;52875;52876;52877;52878;52879;52880;52881;52882;52883;52884;52885;52886;52887;52888;52889;52890;52891;52892;52893;52894;52895;52896	52895			53	
AYFLGSK	1	Unmodified	784.41194	0.41194006	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		32.714	32.714	2	0.027212	28460	160511_QHF_FH_JSI11i_3	46.426	10.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6197	3173	5852	38714	52897	52897			1	
AYFLGYMVHR	0	Unmodified	1255.6172	0.61719858	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	69.95	61.207	2;3	3.1017E-17	32508	160513_QHF_FH_JSI9Kac_6	162.51	123.49			0.99016	0.97218	9.6628	9	4	Median	1.1333	0.97939	1.0457	2	0	Median	0.77084	0.90947	10.19	3	2	Plateau	1.0533	1.0159	7.8875	2	1	Median	0.86572	0.92237	19.493	2	1	Median	4371100000	2342900000	2028200000	613550000	274800000	338750000	2749100000	1578800000	1170200000	689290000	327910000	361380000	319180000	161370000	157810000	6198	1366	5853	38715;38716;38717;38718;38719;38720;38721;38722;38723	52898;52899;52900;52901;52902;52903;52904;52905;52906;52907;52908;52909;52910	52904			13	
AYFLGYMVHR	0	Oxidation (M)	1271.6121	0.61211321	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	58.141	48.825	2;3	5.5203E-07	26769	160513_QHF_FH_JSI10Kac_6	130.04	112.6			1.1409	1.1082	11.542	8	1	Median	1.2841	1.0905	2.4399	2	0	Median	0.81172	0.96974	18.7	2	0	Median	1.29	1.217	6.6119	2	1	Median	1.0199	1.0927	4.1178	2	0	Median	535840000	260700000	275140000	213450000	99116000	114330000	175680000	92547000	83129000	68825000	33180000	35645000	77890000	35861000	42029000	6199	1366	5853	38724;38725;38726;38727;38728;38729;38730;38731	52911;52912;52913;52914;52915;52916;52917;52918;52919;52920;52921	52921		996	11	
AYFLYMYSR	0	Unmodified	1212.5638	0.56376603	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	75.903	68.865	2	3.6433E-24	36538	160513_QHF_FH_JSI9Kac_6	186.13	165.61			1.0634	1.0045	10.215	5	1	Median	1.1952	1.0045	NaN	1	0	Median	0.94239	1.1168	16.656	2	1	Median	1.1698	1.0992	NaN	1	0	Median	0.94708	0.99185	NaN	1	0	Median	5764000000	2857000000	2907000000	878350000	362400000	515960000	2114100000	1200300000	913740000	1865700000	843450000	1022200000	905890000	450810000	455080000	6200	5350	5854	38732;38733;38734;38735;38736	52922;52923;52924;52925;52926;52927;52928;52929;52930	52926			9	
AYFLYMYSR	0	Oxidation (M)	1228.5587	0.55868065	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	68.597	59.049	2	7.3934E-06	30776	160513_QHF_FH_JSI12Kac_6	131.06	95.182			1.0831	1.1016	5.7127	6	0	Median	1.36	1.1537	4.6503	2	0	Median	0.96441	1.149	7.8456	2	0	Median	1.136	1.0673	NaN	1	0	Median	1.0137	1.064	NaN	1	0	Median	926340000	436630000	489710000	283800000	125500000	158300000	287970000	143050000	144920000	145850000	72992000	72858000	208720000	95094000	113630000	6201	5350	5854	38737;38738;38739;38740;38741;38742	52931;52932;52933;52934;52935;52936;52937;52938	52937		2636	8	
AYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHK	1	Unmodified	4416.1426	0.14261186	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.391	86.67	5	3.8966E-20	49584	160513_QHF_FH_JSI10Kac_6	115.77	108.45			0.66123	0.78764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66123	0.78764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77181000	57310000	19871000	0	0	0	77181000	57310000	19871000	0	0	0	0	0	0	6202	2460	5855	38743	52939	52939			1	
AYFTSATMIIAIPTGVK	1	Unmodified	1782.959	0.95899339	766	P00395	MT-CO1	Cytochrome c oxidase subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.158	83.437	2	4.8499E-10	47284	160513_QHF_FH_JSI10Kac_6	172.57	137.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14381000	14381000	0	0	0	0	14381000	14381000	0	0	0	0	0	0	0	6203	766	5856	38744	52940	52940			1	
AYGALSK	1	Unmodified	708.38064	0.38063993	4151	Q96K58	ZNF668	Zinc finger protein 668	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			8.756	1.9195	2	0.053961	3272	160513_QHF_FH_JSI10Kac_6	50.12	1.946			0.96638	1.156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96638	1.156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3037700	1669400	1368300	0	0	0	3037700	1669400	1368300	0	0	0	0	0	0	6204	4151	5857	38745	52941	52941			1	
AYGASKTFGK	2	Acetyl (K)	1070.5397	0.53965977	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	38.236	28.523	2	4.2014E-06	16654	160513_QHF_FH_JSI10Kac_4	120.12	97.379			0.91426	0.95999	18.088	6	0	Median	NaN	NaN	NaN	0	0	Median	0.68522	0.81467	6.4053	2	0	Median	1.0657	1.0534	23.263	2	0	Median	0.98118	1.0865	7.3721	2	0	Median	73143000	36002000	37141000	0	0	0	20121000	11540000	8581100	26096000	11402000	14693000	26926000	13060000	13866000	6205	1293	5858	38746;38747;38748;38749;38750;38751	52942;52943;52944;52945;52946;52947	52942	1220;1221		6	
AYGDRIER	0	Unmodified	978.48829	0.4882929	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	4.43	4.75		3	3						1	2	3	1	1	10.446	9.0491	2;3	0.0018615	7364	160511_QHF_FH_JSI9i_2	58.981	29.508			0.92479	0.98913	8.2105	6	1	Median	1.2379	0.97221	NaN	1	0	Median	0.82891	1.0005	2.3034	3	1	Median	1.276	1.2032	NaN	1	0	Median	0.97605	0.97554	NaN	1	0	Median	2376900000	1133800000	1243100000	1325100000	589600000	735480000	761490000	414370000	347120000	212350000	91246000	121110000	77988000	38590000	39398000	6206	1057	5859	38752;38753;38754;38755;38756;38757;38758	52948;52949;52950;52951;52952;52953	52949			6	
AYGELPEHAK	1	Unmodified	1113.5455	0.54547343	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.19	3	7	4				1	7		4	7	6	5	21.433	17.693	2;3	7.2324E-08	14694	160511_QHF_FH_JSI11i_2	131.06	98.221			1.1049	1.1534	49.394	22	7	Median	1.1474	0.97259	78.136	4	3	Median	0.78494	0.92922	57.856	7	1	Median	1.2606	1.2608	28.338	6	1	Median	1.0739	1.1633	45.48	5	2	Median	5993200000	2457700000	3535600000	1284400000	521010000	763400000	1430800000	559080000	871760000	2491900000	1127300000	1364700000	786030000	250310000	535720000	6207	1608	5860	38759;38760;38761;38762;38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779;38780	52954;52955;52956;52957;52958;52959;52960;52961;52962;52963;52964;52965;52966;52967;52968;52969;52970;52971;52972;52973;52974;52975;52976;52977;52978;52979;52980;52981;52982;52983;52984	52964			31	
AYGENIGYSEK	1	Unmodified	1229.5564	0.55643205	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	27.849	27.32	2	1.1846E-05	24382	160511_QHF_FH_JSI12i_1	108.7	75.434			3.2928	3.1554	121.64	5	3	Median	1.0452	0.86698	NaN	1	0	Median	1.6803	2.0069	139.02	2	1	Median	3.2928	3.1554	NaN	1	1	Median	12.782	13.103	NaN	1	1	Median	596040000	221290000	374760000	191700000	89861000	101840000	302050000	120210000	181850000	37150000	7377100	29773000	65143000	3844800	61298000	6208	822	5861	38781;38782;38783;38784;38785	52985;52986;52987;52988;52989;52990	52986			5	
AYGFSCDGEGVLK	1	Unmodified	1401.6235	0.62346575	4295	Q99622	C12orf57	Protein C10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										2	1	54.676	54.138	2	0.0017368	48959	160511_QHF_FH_JSI11i_1	72.096	62.142			1.883	1.923	37.509	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5004	1.475	NaN	1	1	Median	2.363	2.507	NaN	1	1	Median	84149000	36338000	47811000	0	0	0	0	0	0	44863000	20722000	24141000	39286000	15616000	23671000	6209	4295	5862	38786;38787;38788	52991;52992;52993	52991			3	
AYGGSMCAK	1	Oxidation (M)	959.38409	0.3840871	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	1	0			By MS/MS	By MS/MS	8.6	6.22	2					1	2					2	3	6.0429	1.4908	2	0.0155	3378	160511_QHF_FH_JSI12i_1	50.127	36.749			1.0861	1.1107	22.003	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84006	0.82228	15.076	2	0	Median	1.0861	1.1107	5.9764	3	0	Plateau	170660000	93677000	76980000	0	0	0	0	0	0	78364000	47828000	30536000	92293000	45849000	46444000	6210	1646	5863	38789;38790;38791;38792;38793	52994;52995;52996	52994		1307	3	
AYGGSMCAK	1	Unmodified	943.38917	0.38917248	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.6	4.72		3	1				1			1	1	1	2	12.159	9.8955	2	0.013254	6326	160513_QHF_FH_JSI10Kac_4	54.157	43.743			1.0668	1.0905	28.722	5	0	Median	1.1571	0.97658	NaN	1	0	Median	0.90217	1.0905	NaN	1	0	Median	0.84749	0.86496	NaN	1	0	Median	1.321	1.4361	34.822	2	0	Median	435630000	225140000	210490000	93998000	33463000	60534000	4795100	2168800	2626300	182910000	116680000	66225000	153930000	72823000	81106000	6211	1646	5863	38794;38795;38796;38797;38798	52997;52998;52999	52997			3	
AYGPGIEPTGNMVK	1	Unmodified	1432.7021	0.70205043	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.76	4.78	8	4	2				3			4	5	4	4	49.794	47.157	2;3	2.6434E-16	42933	160511_QHF_FH_JSI11i_1	169.21	157.72			1.0177	0.99371	7.9378	17	0	Median	1.219	1.0096	1.6383	4	0	Median	0.8338	0.98857	11.712	5	0	Median	1.0203	0.99311	5.3032	4	0	Median	0.95695	1.0317	10.241	4	0	Median	6460900000	3036200000	3424600000	1524100000	605860000	918210000	1514300000	833300000	681040000	1681400000	771900000	909530000	1741000000	825170000	915830000	6212	1192	5864	38799;38800;38801;38802;38803;38804;38805;38806;38807;38808;38809;38810;38811;38812;38813;38814;38815	53000;53001;53002;53003;53004;53005;53006;53007;53008;53009;53010;53011;53012;53013;53014;53015;53016;53017;53018;53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030	53001			31	
AYGPGIEPTGNMVK	1	Oxidation (M)	1448.697	0.69696505	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0		By MS/MS		By MS/MS	8	6		1					1				1		1	40.734	35.214	2	0.0039017	20398	160513_QHF_FH_JSI12Kac_4	59.426	32.097			1.0604	1.2061	2.8916	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0376	1.231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0836	1.1817	NaN	1	0	Median	19502000	8915400	10586000	0	0	0	15572000	6990900	8581300	0	0	0	3929600	1924500	2005100	6213	1192	5864	38816;38817	53031;53032;53033	53031		813	3	
AYGPGIEPTGNMVKK	2	Acetyl (K)	1602.8076	0.80757813	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.7	0.471						2	4				3	3		61.323	50.733	2;3	0.0014065	28628	160513_QHF_FH_JSI11Kac_4	96.015	78.151			0.84907	1.0044	77.801	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1234	1.0052	31.561	3	0	Plateau	0.31549	0.30979	7.838	2	0	Median	NaN	NaN	NaN	0	0	Median	27116000	16545000	10571000	0	0	0	7938900	3233900	4705000	19177000	13311000	5866200	0	0	0	6214	1192	5865	38818;38819;38820;38821;38822;38823	53034;53035;53036;53037;53038;53039;53040	53038	1047		7	
AYGPGIEPTGNMVKK	2	Acetyl (K);Oxidation (M)	1618.8025	0.80249275	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	1	1			By MS/MS		13.5	0.5						1	1					2		50.074	40.05	2	0.0028461	23198	160513_QHF_FH_JSI11Kac_4	62.303	41.999			0.32673	0.3307	41.889	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32673	0.3307	41.889	2	1	Median	NaN	NaN	NaN	0	0	Median	3392600	2716700	675890	0	0	0	0	0	0	3392600	2716700	675890	0	0	0	6215	1192	5865	38824;38825	53041;53042	53042	1047	813	2	
AYGPGLEK	1	Unmodified	833.42832	0.42831841	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		28.679	20.245	2	0.040836	12833	160513_QHF_FH_JSI11Kac_4	46.426	32.847			1.1025	1.0738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1025	1.0738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10759000	6567200	4191900	0	0	0	0	0	0	10759000	6567200	4191900	0	0	0	6216	512	5866	38826	53043	53043			1	
AYGQALAK	1	Unmodified	820.4443	0.44430282	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.33	4	4	4			3	3	3	3	4	7	6	7	18.341	14.071	2	0.00056294	9137	160513_QHF_FH_JSI12Kac_4	110.63	64.282			0.98258	1.0305	20.995	24	1	Median	1.2652	1.0283	41.681	4	0	Median	0.87853	1.0542	20.052	7	0	Median	1.0189	1.0268	8.2383	6	1	Median	0.94881	1.027	15.815	7	0	Median	19586000000	10009000000	9577300000	4272300000	1857800000	2414500000	4604200000	2570200000	2034000000	5085500000	2625900000	2459600000	5624400000	2955100000	2669300000	6217	1322	5867	38827;38828;38829;38830;38831;38832;38833;38834;38835;38836;38837;38838;38839;38840;38841;38842;38843;38844;38845;38846;38847;38848;38849;38850	53044;53045;53046;53047;53048;53049;53050;53051;53052;53053;53054;53055;53056;53057;53058;53059;53060;53061;53062;53063;53064;53065;53066;53067;53068;53069;53070;53071;53072	53066			29	
AYGQALAKLGHASDR	1	Acetyl (K)	1598.8165	0.81650333	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	3	1	56.816	47.462	2;3	0.00023591	26076	160513_QHF_FH_JSI10Kac_6	78.249	58.509			0.47034	0.50358	111.29	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2059	1.3935	NaN	1	0	Median	0.16063	0.15088	NaN	1	1	Median	0.47034	0.50358	NaN	1	1	Median	266420000	199190000	67231000	0	0	0	88229000	39226000	49002000	151690000	138250000	13441000	26502000	21714000	4788200	6218	1322	5868	38851;38852;38853;38854;38855;38856	53073;53074;53075;53076;53077;53078	53077	1246		6	
AYGSPWCNK	1	Unmodified	1081.4651	0.46511462	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.366	28.321	2	0.0064476	23766	160511_QHF_FH_JSI12i_3	55.676	29.074			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6219	21	5869	38857	53079	53079			1	
AYGVCFVDTSLGK	1	Unmodified	1415.6755	0.67550132	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			76.277	65.711	2	0.042987	34937	160513_QHF_FH_JSI10Kac_4	38.567	22.686			1.2094	1.4114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2094	1.4114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2102300	908630	1193700	0	0	0	2102300	908630	1193700	0	0	0	0	0	0	6220	1778	5870	38858	53080	53080			1	
AYHAGLK	1	Unmodified	758.40752	0.40752338	604	O94762	RECQL5	ATP-dependent DNA helicase Q5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	9.2897	6.5226	2	0.011095	5778	160511_QHF_FH_JSI11i_2	71.995	45.886			0.87181	0.93747	21.638	12	0	Median	1.5679	1.2987	16.692	3	0	Plateau	0.79034	0.93404	12.893	3	0	Plateau	1.3045	1.2717	34.184	3	0	Plateau	0.7826	0.91838	4.6187	3	0	Plateau	11909000000	5394500000	6514300000	1402100000	594290000	807770000	1673500000	807960000	865560000	3747500000	1557200000	2190400000	5085700000	2435100000	2650600000	6221	604	5871	38859;38860;38861;38862;38863;38864;38865;38866;38867;38868;38869;38870	53081;53082;53083;53084;53085;53086;53087;53088;53089;53090;53091	53087			11	
AYHEQLSVAEITNACFEPANQMVK	1	Oxidation (M)	2765.2789	0.27890034	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1	1	2	3	3	71.747	69.989	3	2.8786E-16	60809	160511_QHF_FH_JSI12i_3	119.02	116.29			0.97463	0.9594	15.022	8	3	Median	1.0617	0.90475	NaN	1	1	Median	0.78627	0.9594	6.4951	2	2	Median	0.88084	0.85167	1.2201	2	0	Median	1.0992	1.1582	3.9784	3	0	Median	769960000	373310000	396650000	23490000	14320000	9170300	74510000	38071000	36439000	170040000	92247000	77790000	501930000	228680000	273250000	6222	2073;2074	5872	38871;38872;38873;38874;38875;38876;38877;38878;38879	53092;53093;53094;53095;53096;53097;53098;53099;53100;53101;53102;53103;53104	53100		1740	13	
AYHEQLSVAEITNACFEPANQMVK	1	Unmodified	2749.284	0.28398571	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.16		6	4						4	2	4	3	5	79.202	76.336	2;3	6.2781E-78	39760	160513_QHF_FH_JSI10Kac_6	208.39	193.82			0.99686	1.0473	20.074	14	2	Median	1.4448	1.222	14.946	2	0	Median	0.81602	0.98145	16.624	4	0	Median	0.87674	0.9007	5.4007	3	0	Plateau	1.2988	1.3266	17.906	5	2	Median	3591600000	1693400000	1898200000	279950000	101840000	178110000	657510000	341720000	315790000	1063300000	516990000	546300000	1590900000	732870000	858030000	6223	2073;2074	5872	38880;38881;38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893	53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118;53119;53120;53121;53122;53123;53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137	53137			32	
AYHEQLTVAEITNACFEPANQMVK	1	Unmodified	2763.2996	0.29963578	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	1	2	79.935	77.404	3	2.2945E-21	69613	160511_QHF_FH_JSI11i_2	135.68	133.04			1.0246	1.0317	21.406	5	1	Median	1.2053	1.0317	NaN	1	0	Median	0.78341	0.95574	NaN	1	0	Median	0.8537	0.83829	NaN	1	0	Median	1.1721	1.3062	17.347	2	1	Median	461210000	232450000	228760000	65775000	29862000	35913000	123950000	70469000	53476000	146480000	80903000	65576000	125010000	51212000	73799000	6224	4359	5873	38894;38895;38896;38897;38898	53138;53139;53140;53141;53142;53143;53144;53145;53146;53147;53148;53149;53150;53151;53152;53153	53146			16	
AYHEQLTVAEITNACFEPANQMVK	1	Oxidation (M)	2779.2946	0.2945504	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	71.266	70.969	3	8.2826E-07	61495	160511_QHF_FH_JSI12i_3	68.97	66.321			1.5878	1.632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5878	1.632	NaN	1	0	Median	99645000	42257000	57388000	0	0	0	0	0	0	0	0	0	99645000	42257000	57388000	6225	4359	5873	38899	53154;53155	53155		2458	2	
AYHLLVK	1	Unmodified	842.50142	0.50142377	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	9.5	6.5			4						4	2	2	1	3	34.416	28.827	3	0.0032911	23318	160511_QHF_FH_JSI12i_3	62.714	22.611			1.1436	1.0422	20.117	7	0	Median	1.4392	1.2161	21.817	2	0	Median	0.72361	0.85371	9.6298	2	0	Median	1.1644	1.1599	NaN	1	0	Median	1.0802	1.1364	19.353	2	0	Median	97158000	50528000	46630000	24199000	9864800	14334000	22022000	11639000	10383000	4185400	2262800	1922600	46752000	26762000	19990000	6226	4303	5874	38900;38901;38902;38903;38904;38905;38906;38907	53156;53157;53158;53159	53157			4	
AYHLQKSTCGK	2	Acetyl (K)	1333.6449	0.6448699	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		26.468	17.356	2	0.0073517	10541	160513_QHF_FH_JSI11Kac_6	65.347	53.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	965000	965000	0	0	0	0	0	0	0	965000	965000	0	0	0	0	6227	1967	5875	38908	53160	53160	1987		1	
AYHNSPAYLAYINAK	1	Unmodified	1694.8417	0.84165545	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	5.92			12						5	3	3	4	7	56.3	52.688	2;3	3.8563E-21	46176	160511_QHF_FH_JSI11i_3	136.48	127.96			1.1073	1.0441	32.056	14	4	Median	1.1255	0.89064	19.865	3	0	Plateau	0.81775	0.9352	9.6884	3	0	Median	1.4068	1.3182	7.1985	3	2	Plateau	0.96088	1.0598	52.597	5	2	Median	1185900000	618910000	566970000	222170000	100220000	121950000	255850000	147500000	108350000	311790000	146090000	165700000	396080000	225100000	170980000	6228	3936	5876	38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921;38922;38923;38924;38925	53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183;53184;53185	53162			25	
AYHSFLVEPISCHAWNK	1	Acetyl (Protein N-term)	2099.9887	0.98873039	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	1	2	3	3	79.095	75.03	3	5.6701E-07	69324	160511_QHF_FH_JSI11i_3	60.918	48.255			1.1375	1.1846	63.494	7	1	Median	0.95343	0.80911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96789	1.0237	18.305	3	0	Median	5.113	5.1704	79.809	3	1	Plateau	391170000	138240000	252930000	14580000	7302000	7277700	36335000	0	36335000	199310000	100210000	99104000	140940000	30724000	110220000	6229	255	5877	38926;38927;38928;38929;38930;38931;38932;38933;38934	53186;53187;53188;53189;53190;53191;53192;53193;53194	53186			9	
AYHSFLVEPISCHAWNKDR	1	Acetyl (K);Acetyl (Protein N-term)	2413.1273	0.12734914	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	1	1	0	1			By MS/MS		16	0									1			1		81.237	71.923	3	3.2876E-05	39545	160513_QHF_FH_JSI11Kac_6	112.74	104.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6230	255	5878	38935	53195	53195	136		1	
AYHSGYGAHGSK	1	Acetyl (Protein N-term)	1275.5632	0.56324876	640	O95070	YIF1A	Protein YIF1A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	1	3	5	8.9584	8.6127	2;3	1.309E-05	6111	160511_QHF_FH_JSI11i_3	73.499	64.285			1.0335	1.0428	22.051	8	0	Median	1.3025	1.1114	NaN	1	0	Median	1.2492	1.5453	NaN	1	0	Median	1.1241	1.1301	7.7477	3	0	Plateau	0.74078	0.80981	17.055	3	0	Median	432000000	211630000	220360000	48145000	14096000	34049000	28461000	12833000	15629000	230590000	114660000	115930000	124800000	70049000	54755000	6231	640	5879	38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946	53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208	53197			13	
AYIAYELNSVQHR	0	Unmodified	1562.7841	0.78414057	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		47.035	47.035	3	0.006016	41565	160511_QHF_FH_JSI11i_3	48.467	39.431			1.0615	0.99501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0615	0.99501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146220000	84507000	61714000	0	0	0	0	0	0	146220000	84507000	61714000	0	0	0	6232	2348	5880	38947	53209	53209			1	
AYIDSFR	0	Unmodified	870.42357	0.42356738	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.56	5.98		4	2					3		1	3	2	3	39.397	35.414	2	0.0072762	31380	160511_QHF_FH_JSI10i_2	88.029	21.036			0.94885	1.0366	16.535	9	1	Median	1.1336	0.98084	NaN	1	0	Median	0.84183	1.0366	26.428	3	0	Median	0.98993	1.0025	9.9568	2	0	Median	1.0248	1.1377	16.816	3	1	Plateau	1336700000	663970000	672770000	184940000	82783000	102160000	318990000	171290000	147700000	553770000	266350000	287430000	279040000	143550000	135490000	6233	1064	5881	38948;38949;38950;38951;38952;38953;38954;38955;38956	53210;53211;53212;53213;53214;53215	53214			6	
AYILFYVEHQAK	1	Unmodified	1480.7715	0.77145062	5728	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	3	3	73.698	65.979	2;3	8.2792E-32	35831	160513_QHF_FH_JSI11Kac_6	232.72	169.9			1.0134	1.0826	38.436	9	1	Median	0.91946	0.79581	21.855	2	0	Median	0.94282	1.1172	4.5731	2	0	Median	1.1826	1.1158	58.681	3	1	Median	1.0267	1.0964	1.8011	2	0	Median	2330100000	1180500000	1149600000	459190000	246180000	213020000	895230000	450760000	444480000	550740000	270960000	279780000	424880000	212560000	212320000	6234	5728	5882	38957;38958;38959;38960;38961;38962;38963;38964;38965;38966	53216;53217;53218;53219;53220;53221;53222;53223;53224;53225;53226;53227;53228;53229;53230;53231;53232;53233	53220			18	
AYILNLVK	1	Unmodified	932.5695	0.56950333	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.63	4	4	4				2	5	4	4	8	5	6	71.745	66.66	2	4.4129E-08	59732	160511_QHF_FH_JSI10i_2	155.19	120.38			0.9212	0.92277	23.5	23	5	Median	1.1149	0.94681	12.213	4	0	Median	0.77738	0.91822	35.922	8	2	Median	0.92094	0.88319	6.2474	5	1	Median	0.99268	1.011	20.272	6	2	Median	13400000000	6376400000	7023100000	2445000000	1213200000	1231800000	3327600000	1865200000	1462400000	3670700000	1674400000	1996300000	3956100000	1623600000	2332500000	6235	1722	5883	38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989	53234;53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245;53246;53247;53248;53249;53250;53251;53252;53253;53254;53255;53256;53257;53258;53259;53260;53261;53262;53263;53264;53265;53266;53267;53268;53269;53270;53271;53272;53273;53274;53275;53276;53277	53266			44	
AYILNLVKQIK	2	Acetyl (K)	1343.8177	0.81767253	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.136	78.863	2	1.1931E-26	43648	160513_QHF_FH_JSI11Kac_6	180.44	153.11			0.62054	0.86864	16.676	4	0	Linear	1.1165	0.95291	NaN	1	0	Median	0.86029	0.98359	NaN	1	0	Median	0.71596	0.68894	NaN	1	0	Median	0.76135	0.79181	NaN	1	0	Median	604430000	343320000	261110000	99420000	52529000	46891000	112430000	61983000	50451000	279450000	171730000	107720000	113120000	57072000	56051000	6236	1722	5884	38990;38991;38992;38993	53278;53279;53280;53281;53282;53283;53284;53285	53278	1739		8	
AYINKVEELKK	3	Acetyl (K)	1375.7711	0.77111627	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		57.79	46.924	3	0.0067022	25777	160513_QHF_FH_JSI11Kac_5	59.975	45.099			0.39329	0.38794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39329	0.38794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9281900	6455200	2826700	0	0	0	0	0	0	9281900	6455200	2826700	0	0	0	6237	863	5885	38994	53286	53286	552		1	
AYIQENLELVEK	1	Unmodified	1447.7559	0.75586013	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1							1	3	1	2	63.418	62.766	2	2.1432E-07	56763	160511_QHF_FH_JSI10i_1	132.17	96.212			0.95953	0.94394	9.9505	5	3	Median	1.0376	0.86411	NaN	1	0	Median	0.77481	0.94522	8.0435	2	1	Median	0.95953	0.94394	NaN	1	1	Median	1.06	1.1109	NaN	1	1	Median	635550000	341180000	294360000	34752000	15724000	19028000	262950000	171610000	91347000	181760000	80205000	101560000	156080000	73646000	82430000	6238	1004	5886	38995;38996;38997;38998;38999;39000;39001	53287;53288;53289;53290;53291;53292;53293	53291			7	
AYIVQLQIEDLTRK	1	Unmodified	1688.9461	0.94612052	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.54		2	5						2	1	4	2	2	80.553	78.524	2;3	8.5101E-17	69509	160511_QHF_FH_JSI12i_3	131.28	116.02			0.84113	0.96923	33.235	7	1	Median	0.51349	0.44904	NaN	1	0	Median	0.77945	0.91449	22.834	4	1	Median	1.2199	1.1122	NaN	1	0	Median	0.95831	0.96923	NaN	1	0	Median	583320000	325270000	258060000	18754000	10946000	7807800	373410000	221930000	151490000	71227000	33558000	37669000	119930000	58836000	61094000	6239	2689	5887	39002;39003;39004;39005;39006;39007;39008;39009;39010	53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304	53302			11	
AYLDHFSR	0	Unmodified	1007.4825	0.48247924	2820	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	26.255	25.581	3	0.0013084	21149	160511_QHF_FH_JSI12i_3	65.305	41.877			0.97062	0.99985	17.708	4	0	Median	1.4964	1.1923	NaN	1	0	Median	0.84157	0.96332	NaN	1	0	Median	1.1195	1.0378	NaN	1	0	Median	0.75924	0.78006	NaN	1	0	Median	289500000	134300000	155190000	30797000	11796000	19001000	49190000	24220000	24970000	72889000	27671000	45218000	136620000	70616000	66004000	6240	2820	5888	39011;39012;39013;39014	53305	53305			1	
AYLDQTVVPILLQGLAVLAK	1	Unmodified	2124.2558	0.25582734	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.47	1	9	6						8	6	6	8	4	103.51	100.53	2;3	5.2789E-122	53805	160513_QHF_FH_JSI9Kac_6	253.69	214.42			1.0611	1.0398	13.6	23	4	Median	1.1119	0.932	9.5773	6	2	Median	0.85966	1.0127	11.402	5	0	Median	1.0841	1.0521	12.899	8	2	Median	1.1005	1.1461	17.552	4	0	Median	2661900000	1340000000	1321900000	1067700000	499070000	568580000	820780000	449890000	370880000	585720000	298680000	287030000	187790000	92389000	95401000	6241	4576	5889	39015;39016;39017;39018;39019;39020;39021;39022;39023;39024;39025;39026;39027;39028;39029;39030;39031;39032;39033;39034;39035;39036;39037;39038	53306;53307;53308;53309;53310;53311;53312;53313;53314;53315;53316;53317;53318;53319;53320;53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333;53334;53335;53336;53337;53338;53339;53340;53341;53342;53343;53344;53345	53334			40	
AYLEAHETFNEWFK	1	Unmodified	1783.8206	0.82058566	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.715	74.424	3	0.0067707	64685	160511_QHF_FH_JSI12i_3	48.112	28.558			5.8937	5.9274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.8937	5.9274	NaN	1	1	Median	29463000	5238100	24225000	0	0	0	0	0	0	0	0	0	29463000	5238100	24225000	6242	1895	5890	39039	53346	53346			1	
AYLEGTCVEWLR	0	Unmodified	1495.7129	0.71294946	788;967;1352;1354;2788;1353	P10316;P01892;P01891;P30453;P30459;P16190;P10314;P30480;P30460;P18463;P30462;P30508;Q29960;P30510;Q07000;P30505;Q9TNN7;P30504;Q29963;P10321;Q29865;P30499	HLA-A;HLA-B;HLA-C	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.432	73.565	2	2.7945E-11	64476	160511_QHF_FH_JSI11i_2	152.54	136.91			1.1246	1.1953	21.808	4	0	Median	1.3675	1.2204	NaN	1	0	Median	0.93381	1.1707	NaN	1	0	Median	0.90165	0.89429	NaN	1	0	Median	1.3544	1.5215	NaN	1	0	Median	384120000	188180000	195940000	48248000	24714000	23535000	95429000	48481000	46948000	144980000	72316000	72663000	95462000	42666000	52796000	6243	967;788;1352;1353;1354;2788	5891	39040;39041;39042;39043	53347;53348;53349;53350;53351;53352;53353;53354	53351			8	
AYLEGTCVEWLRR	0	Unmodified	1651.8141	0.81406049	788;967;1352;1354;2788;1353	P10316;P01892;P01891;P30453;P30459;P16190;P10314;P30480;P30460;P18463;P30462;P30508;Q29960;P30510;Q07000;P30505;Q9TNN7;P30504;Q29963;P10321;Q29865;P30499	HLA-A;HLA-B;HLA-C	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	1		By MS/MS			2	0		1									1			63.284	62.433	3	0.024754	55303	160511_QHF_FH_JSI10i_2	28.976	16.811			0.87199	1.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87199	1.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25061000	10939000	14122000	0	0	0	25061000	10939000	14122000	0	0	0	0	0	0	6244	967;788;1352;1353;1354;2788	5892	39044	53355	53355			1	
AYLESEVAISEELVQK	1	Unmodified	1806.9251	0.92511031	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								3	4	3	4	82.446	81.919	2;3	1.4263E-35	72697	160511_QHF_FH_JSI10i_2	165.7	135.89			0.82539	0.90344	23.728	11	9	Median	1.4494	1.2082	8.7225	2	2	Median	0.75955	0.90333	9.3124	2	1	Median	1.2058	1.1484	35.288	3	2	Plateau	0.79485	0.8414	17.75	4	4	Median	358760000	170130000	188630000	49585000	19224000	30362000	106650000	53200000	53450000	76843000	32311000	44532000	125680000	65397000	60281000	6245	4919	5893	39045;39046;39047;39048;39049;39050;39051;39052;39053;39054;39055;39056;39057;39058	53356;53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367;53368;53369;53370;53371;53372	53372			16	
AYLESFYK	1	Unmodified	1019.4964	0.49639797	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		3						3		1	1	2	2	56.667	51.767	2	0.00063796	44699	160511_QHF_FH_JSI11i_2	101.64	84.679			0.86965	0.94755	13.75	5	0	Median	NaN	NaN	NaN	0	0	Median	0.76658	0.94755	NaN	1	0	Median	0.9918	0.98753	14.562	2	0	Median	0.89249	0.97369	23.082	2	0	Median	349870000	197740000	152130000	0	0	0	77870000	50490000	27380000	187450000	102440000	85009000	84552000	44815000	39737000	6246	1954	5894	39059;39060;39061;39062;39063;39064	53373;53374;53375;53376;53377;53378;53379;53380	53376			8	
AYLFAHAVDFVPSEENNLVGTLK	1	Unmodified	2533.2853	0.28528957	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1	3	2	2	2	99.313	98.282	2;3	4.0086E-47	87191	160511_QHF_FH_JSI12i_3	240.24	198.03			1.0726	1.0339	10.386	9	0	Median	1.357	1.1178	16.592	3	0	Median	0.83409	1.0092	3.4188	2	0	Median	1.0777	1.0613	7.2514	2	0	Median	1.0156	0.98374	9.4528	2	0	Median	2332000000	1120600000	1211500000	397110000	173820000	223290000	402400000	211500000	190900000	655300000	311880000	343420000	877230000	423370000	453860000	6247	2795	5895	39065;39066;39067;39068;39069;39070;39071;39072;39073	53381;53382;53383;53384;53385;53386;53387;53388;53389;53390;53391;53392;53393;53394	53394			14	
AYLGDTSEAK	1	Unmodified	1053.4979	0.49785453	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					1	3	2	21.81	17.939	2	0.00019303	15452	160511_QHF_FH_JSI10i_1	92.838	74.852			0.88887	0.9317	36.971	6	5	Median	NaN	NaN	NaN	0	0	Median	1.2317	1.4525	NaN	1	1	Median	0.7133	0.67955	47.175	3	2	Median	0.88887	0.9317	18.621	2	2	Median	150940000	83149000	67792000	0	0	0	46237000	25164000	21073000	50582000	30215000	20367000	54122000	27770000	26352000	6248	3172	5896	39074;39075;39076;39077;39078;39079	53395;53396;53397;53398;53399;53400;53401	53400			7	
AYLIYFQAASHLK	1	Unmodified	1523.8136	0.81364979	3874	Q92729	PTPRU	Receptor-type tyrosine-protein phosphatase U	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				77.87	69.252	3	1.7007E-13	37330	160513_QHF_FH_JSI9Kac_6	130.99	116.56			1.1917	1.0246	NaN	1	0	Median	1.1917	1.0246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51847000	27252000	24595000	51847000	27252000	24595000	0	0	0	0	0	0	0	0	0	6249	3874	5897	39080	53402	53402			1	
AYLLQNFNEEGTTEK	1	Unmodified	1755.8315	0.83154427	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61	60.09	2	1.3971E-06	52172	160511_QHF_FH_JSI11i_2	153.95	130.1			1.7582	1.8101	30.856	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2425	2.2514	NaN	1	1	Median	1.3785	1.4553	NaN	1	1	Median	40348000	11203000	29145000	0	0	0	0	0	0	27087000	3815800	23271000	13261000	7387000	5874000	6250	2947	5898	39081;39082	53403;53404;53405	53405			3	
AYLLQNFNEEGTTEKPSK	2	Unmodified	2068.0113	0.011299553	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	53.387	52.796	3	2.0567E-11	46682	160511_QHF_FH_JSI11i_3	151.39	134.02			0.83627	0.9171	48.372	5	4	Median	NaN	NaN	NaN	0	0	Median	0.90008	1.074	5.6957	2	1	Median	0.3608	0.33779	NaN	1	1	Median	0.81462	0.82222	15.445	2	2	Median	379080000	237090000	141990000	0	0	0	91840000	52458000	39381000	216170000	149060000	67103000	71073000	35571000	35501000	6251	2947	5899	39083;39084;39085;39086;39087	53406;53407;53408;53409;53410;53411;53412;53413	53407			8	
AYLMTEGSDEK	1	Unmodified	1242.5438	0.54381845	3416	Q8IWA4	MFN1	Mitofusin-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.937	29.369	2	0.0047355	26240	160511_QHF_FH_JSI12i_1	64.04	41.954			4.4612	4.5583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4612	4.5583	NaN	1	1	Median	25803000	6446300	19356000	0	0	0	0	0	0	0	0	0	25803000	6446300	19356000	6252	3416	5900	39088	53414	53414			1	
AYLNQTVTEFK	1	Unmodified	1312.6663	0.66631685	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	6		1					1				1	1		57.534	51.918	2	7.83E-05	44863	160511_QHF_FH_JSI11i_2	100.58	87.607			1.0317	1.1258	32.9	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1822	1.4207	NaN	1	1	Median	0.90032	0.89211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46981000	25037000	21944000	0	0	0	4427400	1790600	2636800	42554000	23246000	19307000	0	0	0	6253	4152	5901	39089;39090	53415;53416	53416			2	
AYLPQELLGK	1	Unmodified	1130.6336	0.63356015	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	70.603	69.519	2	6.2022E-05	59977	160511_QHF_FH_JSI12i_2	90.709	62.491			1.2083	1.1666	6.7959	2	1	Median	1.455	1.224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0035	1.1118	NaN	1	0	Median	176460000	81445000	95013000	72859000	31125000	41735000	0	0	0	0	0	0	103600000	50321000	53278000	6254	1733	5902	39091;39092	53417;53418;53419	53418			3	
AYLPTGK	1	Unmodified	748.41194	0.41194006	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.8	5.11	3	1					1			1	2	1	1	25.315	22.53	2	0.0096078	19619	160511_QHF_FH_JSI10i_2	68.312	31.337			1.0054	1.1219	45.027	4	1	Median	0.68168	0.56142	NaN	1	0	Median	1.1948	1.42	NaN	1	0	Median	1.4447	1.4491	NaN	1	1	Median	0.84602	0.88642	NaN	1	0	Median	248000000	108000000	140000000	75503000	35997000	39506000	63450000	17242000	46208000	5095300	2155600	2939600	103950000	52608000	51346000	6255	4987	5903	39093;39094;39095;39096;39097	53420;53421;53422;53423	53423			4	
AYLPVNESFGFTADLR	0	Unmodified	1798.889	0.88899957	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.27	6	8	6						4	4	7	8	5	91.928	90.193	2;3	1.2032E-52	43065	160513_QHF_FH_JSI11Kac_6	190.85	172.79			0.93954	1.0266	12.111	23	5	Median	1.2156	1.0266	4.6365	3	0	Median	0.8564	1.0534	9.211	7	3	Median	1.0224	1.0217	17.154	8	2	Median	0.92966	1.0299	9.7642	5	0	Median	4589700000	2277900000	2311700000	690210000	328140000	362070000	1173800000	632250000	541530000	1681900000	800280000	881640000	1043700000	517260000	526490000	6256	1033	5904	39098;39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121	53424;53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435;53436;53437;53438;53439;53440;53441;53442;53443;53444;53445;53446;53447;53448;53449;53450;53451;53452;53453;53454;53455;53456;53457;53458;53459;53460;53461;53462;53463;53464;53465;53466;53467	53440			44	
AYLQEEERENSEVSPR	0	Unmodified	1934.897	0.89699808	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	27.834	27.36	3	2.3871E-06	23547	160511_QHF_FH_JSI11i_3	124.09	105.5			1.1484	1.1539	8.3484	5	0	Median	1.3222	1.1539	NaN	1	0	Median	0.79113	0.9674	NaN	1	0	Median	1.1315	1.1215	5.0418	2	0	Median	1.1833	1.189	NaN	1	0	Median	218710000	104750000	113960000	41995000	21184000	20811000	43852000	24260000	19592000	96644000	41850000	54794000	36215000	17453000	18762000	6257	2547	5905	39122;39123;39124;39125;39126	53468;53469;53470;53471;53472;53473;53474;53475;53476	53469			9	
AYLQQLR	0	Unmodified	890.4974	0.49740102	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	30.128	29.68	2	0.00097038	24815	160511_QHF_FH_JSI12i_3	126.05	77.804			0.90404	0.89768	1.7511	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.80953	0.92179	NaN	1	0	Median	0.96198	0.91982	0.6536	2	1	Median	0.86276	0.88958	NaN	1	0	Median	1220200000	637080000	583120000	0	0	0	169920000	88291000	81627000	547090000	283170000	263920000	503200000	265620000	237580000	6258	257	5906	39127;39128;39129;39130	53477;53478;53479;53480;53481	53481			5	
AYLQVLSVLR	0	Unmodified	1160.6917	0.69174374	5155	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.155	77.562	2	0.0086084	43035	160513_QHF_FH_JSI10Kac_6	58.433	31.831			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6259	5155	5907	39131	53482	53482			1	
AYLSAHLK	1	Unmodified	901.50215	0.50215205	4633	Q9H0H0	INTS2	Integrator complex subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		24.781	23.46	3	0.0044182	19691	160511_QHF_FH_JSI11i_3	49.097	32.426			3.1015	2.5029	NaN	1	1	Median	3.1015	2.5029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24144000	7073200	17071000	24144000	7073200	17071000	0	0	0	0	0	0	0	0	0	6260	4633	5908	39132;39133	53483;53484	53483			2	
AYLSIWTELQAYIK	1	Unmodified	1697.9029	0.90285872	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		97.341	89.006	2;3	3.9268E-17	50410	160513_QHF_FH_JSI9Kac_6	189.13	172.11			0.53781	0.49246	27.825	4	4	Median	0.57197	0.49246	4.8544	2	2	Median	0.53433	0.62523	NaN	1	1	Median	0.34145	0.32154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	568650000	375930000	192720000	205850000	116380000	89464000	196680000	137700000	58974000	166120000	121840000	44281000	0	0	0	6261	2169	5909	39134;39135;39136;39137	53485;53486;53487;53488	53486			4	
AYLVPENFR	0	Unmodified	1107.5713	0.57129425	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.785	55.853	2	0.0022934	49350	160511_QHF_FH_JSI10i_2	66.073	53.546			0.69033	0.72838	9.2045	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77093	0.77736	NaN	1	0	Median	0.61816	0.68248	NaN	1	0	Median	209960000	114410000	95550000	0	0	0	0	0	0	133150000	70382000	62773000	76805000	44029000	32777000	6262	3325	5910	39138;39139;39140;39141	53489;53490;53491;53492	53492			4	
AYMHGFFMDIR	0	Oxidation (M)	1402.6162	0.61621231	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				66.676	57.841	3	0.030796	30818	160513_QHF_FH_JSI9Kac_6	35.006	31.784			1.8701	1.5929	NaN	1	1	Median	1.8701	1.5929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8096400	3509100	4587300	8096400	3509100	4587300	0	0	0	0	0	0	0	0	0	6263	4393	5911	39142	53493	53493			1	
AYMHGFFMDIR	0	Unmodified	1386.6213	0.62129768	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	75.673	67.206	3	0.02824	35802	160513_QHF_FH_JSI9Kac_6	35.996	32.494			0.93609	0.95909	16.018	4	0	Median	0.98712	0.84028	NaN	1	0	Median	0.84329	0.97595	NaN	1	0	Median	1.2732	1.2311	NaN	1	0	Median	0.8877	0.94252	NaN	1	0	Median	143470000	76028000	67442000	26636000	14821000	11814000	55563000	33786000	21777000	30861000	11889000	18972000	30410000	15531000	14878000	6264	4393	5911	39143;39144;39145;39146	53494;53495	53494			0	
AYMLMTLQGLEYLHQHWILHR	0	Unmodified	2652.3457	0.34573853	1714	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		91.061	82.917	4;5	1.2471E-22	46061	160513_QHF_FH_JSI9Kac_6	145.61	133.99			1.0435	1.0743	32.634	4	2	Median	1.057	0.90859	45.237	2	1	Median	0.76711	0.92245	NaN	1	0	Median	1.4195	1.3502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	315510000	151300000	164220000	122810000	62791000	60020000	144590000	79300000	65292000	48108000	9204600	38903000	0	0	0	6265	1714	5912	39147;39148;39149;39150	53496;53497;53498;53499	53497			4	
AYMLMTLQGLEYLHQHWILHR	0	Oxidation (M)	2668.3407	0.34065315	1714	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			86.381	80.68	5	0.0015747	45278	160513_QHF_FH_JSI10Kac_6	52.298	48.566			0.93634	1.1027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93634	1.1027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48248000	21536000	26712000	0	0	0	48248000	21536000	26712000	0	0	0	0	0	0	6266	1714	5912	39151	53500	53500		1393	0	
AYNYVAQEVDDYHAFQTLTHIYNK	1	Unmodified	2902.3562	0.35622268	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	2	2	2	3	88.551	84.792	3;4	2.9006E-78	41513	160513_QHF_FH_JSI9Kac_6	212.01	197.61			0.97194	1.0118	9.0327	9	3	Median	1.2391	1.0513	14.739	2	1	Median	0.80862	0.97483	7.4388	2	1	Median	1.0803	1.0279	2.2365	2	0	Median	0.97194	1.0128	9.1633	3	1	Plateau	1584000000	801380000	782630000	240640000	92747000	147890000	262030000	168360000	93671000	371880000	191350000	180530000	709450000	348920000	360530000	6267	5135	5913	39152;39153;39154;39155;39156;39157;39158;39159;39160	53501;53502;53503;53504;53505;53506;53507;53508;53509;53510;53511;53512;53513;53514;53515;53516	53508			16	
AYPAAITILETAQK	1	Unmodified	1488.8188	0.81879474	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	81.186	80.532	3	0.0032181	70745	160511_QHF_FH_JSI11i_2	53.869	43.747			0.36084	0.40688	23.203	2	2	Median	NaN	NaN	NaN	0	0	Median	0.27803	0.34531	NaN	1	1	Median	0.4683	0.47942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43347000	28992000	14355000	0	0	0	22157000	17467000	4689800	21191000	11525000	9665100	0	0	0	6268	641	5914	39161;39162;39163	53517;53518;53519	53518			3	
AYPDNHLSQVDVNELFSK	1	Unmodified	2074.996	0.99598384	624	O94913	PCF11	Pre-mRNA cleavage complex 2 protein Pcf11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	76.246	75.003	3	0.022048	65764	160511_QHF_FH_JSI11i_2	31.115	21.585			0.34564	0.37406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34564	0.37406	NaN	1	1	Median	31330000	28145000	3185600	0	0	0	0	0	0	0	0	0	31330000	28145000	3185600	6269	624	5915	39164;39165	53520;53521	53521			2	
AYPDVAALSDGYWVVSNR	0	Unmodified	1981.9534	0.95339074	202	O14773	TPP1	Tripeptidyl-peptidase 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				92.853	92.594	3	0.0015213	81418	160511_QHF_FH_JSI9i_2	31.951	27.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6270	202	5916	39166	53522	53522			1	
AYPFYWAWLPQAK	1	Unmodified	1639.8187	0.81873516	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	94.412	85.09	2;3	1.1306E-09	46181	160513_QHF_FH_JSI12Kac_6	159.11	124.58			1.1919	1.0924	68.76	5	2	Median	1.1919	1.0187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9053	1.7973	76.552	2	1	Median	2.0297	2.1562	96.165	2	1	Median	2353300000	498890000	1854500000	150240000	68908000	81335000	0	0	0	966090000	268660000	697430000	1237000000	161320000	1075700000	6271	4422	5917	39167;39168;39169;39170;39171	53523;53524;53525;53526;53527;53528;53529	53529			7	
AYPHNLMTFQMK	1	Unmodified	1479.7003	0.70027629	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	57.488	56.656	2	2.1143E-05	46672	160511_QHF_FH_JSI9i_3	111.06	94.031			0.84232	0.62363	22.926	4	2	Linear	1.2382	1.0214	NaN	1	0	Median	0.90311	1.054	NaN	1	1	Median	0.78562	0.7379	NaN	1	1	Median	0.64693	0.66845	NaN	1	0	Median	195340000	103000000	92340000	28628000	13481000	15147000	32957000	17278000	15679000	58809000	31586000	27222000	74951000	40659000	34292000	6272	2687	5918	39172;39173;39174;39175;39176	53530;53531;53532;53533;53534;53535	53533			6	
AYPHVFTK	1	Unmodified	961.50215	0.50215205	222	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	30.811	27.839	2;3	0.00072767	23782	160511_QHF_FH_JSI11i_3	67.897	52.235			1.0196	1.007	12.514	11	0	Median	1.2445	0.99686	1.4291	2	0	Median	0.77165	0.87582	13.582	3	0	Median	1.1221	1.0342	18.119	3	0	Plateau	1.0979	1.1069	5.0961	3	0	Plateau	4813200000	2425400000	2387900000	1247200000	524340000	722870000	898330000	489050000	409270000	1026500000	585730000	440720000	1641200000	826230000	814990000	6273	222	5919	39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188	53536;53537;53538;53539;53540;53541;53542;53543;53544;53545;53546;53547;53548;53549;53550;53551;53552;53553;53554;53555;53556;53557;53558;53559;53560;53561;53562;53563;53564	53539			28	
AYPHVFTKGIPNVLR	1	Acetyl (K)	1752.9675	0.96752467	222	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.031	70.717	3	0.059623	38754	160513_QHF_FH_JSI11Kac_6	32.6	21.338			0.39739	0.37737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39739	0.37737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64833000	45330000	19503000	0	0	0	0	0	0	64833000	45330000	19503000	0	0	0	6274	222	5920	39189	53565	53565			0	
AYPLADAHLTK	1	Unmodified	1198.6346	0.63462279	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.02		8	2					2	2	2	3	5	4	42.586	39.027	2;3	0.00011158	34369	160511_QHF_FH_JSI10i_2	84.17	76.245			0.94751	0.9733	28.415	10	6	Median	0.86789	0.73544	4.7907	2	1	Median	0.84864	0.99937	47.289	2	1	Median	1.0054	1.0196	28.637	4	3	Median	1.0296	1.1302	24.196	2	1	Median	701770000	355710000	346050000	46753000	24273000	22481000	87678000	45033000	42645000	519790000	265040000	254750000	47542000	21364000	26177000	6275	1861	5921	39190;39191;39192;39193;39194;39195;39196;39197;39198;39199;39200;39201;39202;39203	53566;53567;53568;53569;53570;53571;53572;53573;53574;53575;53576;53577;53578;53579;53580;53581;53582	53580			17	
AYPNNYETMK	1	Unmodified	1229.5387	0.53867349	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.075	26.495	2	2.3114E-05	23094	160511_QHF_FH_JSI9i_1	98.033	82.882			1.2614	1.3231	17.851	4	0	Median	1.2283	1.0003	NaN	1	0	Median	1.1167	1.2968	NaN	1	0	Median	1.6111	1.5299	NaN	1	0	Median	1.2955	1.3499	NaN	1	0	Median	263620000	106170000	157440000	55774000	28460000	27314000	70003000	31346000	38657000	62539000	22285000	40254000	75299000	24083000	51216000	6276	3115	5922	39204;39205;39206;39207	53583;53584;53585;53586	53586			3	
AYPPTSMSR	0	Unmodified	1008.4699	0.46986564	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	22.433	21.515	2	0.0052608	17890	160511_QHF_FH_JSI12i_2	64.265	25.046			1.1771	1.1887	14.876	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2017	1.1887	NaN	1	1	Median	0.94983	1.0444	18.191	2	2	Median	145700000	67394000	78305000	0	0	0	0	0	0	54523000	24947000	29576000	91176000	42448000	48728000	6277	3623	5923	39208;39209;39210;39211	53587;53588;53589;53590	53588			4	
AYPVSGSPEYLTEDLPDSIQVGGR	0	Unmodified	2549.2286	0.22856255	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	89.679	89.267	3	1.7298E-12	81290	160511_QHF_FH_JSI12i_1	87.326	78.936			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6278	3849	5924	39212;39213	53591;53592	53592			2	
AYPYMEGEPEDDVYLK	1	Unmodified	1917.8342	0.83424639	4546	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	69.026	68.437	2	1.1201E-07	62267	160511_QHF_FH_JSI12i_1	138.45	124.77			1.2854	1.1978	12.384	6	6	Median	1.5194	1.245	9.1751	2	2	Median	0.87716	1.0446	14.186	2	2	Median	1.303	1.2297	NaN	1	1	Median	1.2681	1.3105	NaN	1	1	Median	339270000	148420000	190850000	89246000	35317000	53929000	110180000	58106000	52079000	66358000	25023000	41335000	73482000	29971000	43512000	6279	4546	5925	39214;39215;39216;39217;39218;39219	53593;53594;53595;53596;53597;53598;53599;53600	53595			8	
AYPYSQTGDDK	1	Unmodified	1243.5357	0.5356966	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	17.949	17.668	2	0.0015113	15102	160511_QHF_FH_JSI12i_1	63.076	38.181			1.1219	1.2277	8.9773	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1114	1.3128	NaN	1	0	Median	1.3953	1.3613	NaN	1	1	Median	1.1219	1.148	NaN	1	0	Median	164080000	71172000	92905000	0	0	0	52738000	24199000	28538000	53534000	23522000	30012000	57806000	23451000	34355000	6280	2213	5926	39220;39221;39222	53601;53602;53603	53602			3	
AYQCVVLLQGK	1	Unmodified	1277.6802	0.68019277	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			64.059	53.376	2	0.000844	27053	160513_QHF_FH_JSI10Kac_5	86.67	72.004			0.053213	0.06246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.053213	0.06246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13476000	12443000	1032400	0	0	0	13476000	12443000	1032400	0	0	0	0	0	0	6281	1818	5927	39223	53604	53604			1	
AYQFAGR	0	Unmodified	811.39769	0.39768698	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	19.397	18.79	2	0.027199	16092	160511_QHF_FH_JSI10i_2	53.71	15.339			0.91291	0.9128	15.476	5	0	Median	1.4158	1.2006	NaN	1	0	Median	0.72643	0.89114	NaN	1	0	Median	0.91291	0.9128	NaN	1	0	Median	0.87526	0.92179	18.562	2	0	Median	333120000	162770000	170350000	54833000	24420000	30413000	45462000	22406000	23057000	45737000	19470000	26267000	187090000	96473000	90617000	6282	2597	5928	39224;39225;39226;39227;39228	53605;53606;53607;53608	53608			4	
AYQHGGVTGLSQY	0	Unmodified	1379.647	0.64697839	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.87		5						2		2	1	2	2	40.044	35.995	2	5.9985E-22	30749	160511_QHF_FH_JSI12i_2	170.89	146.67			1.0627	1.1695	22.815	6	1	Median	1.4029	1.1895	NaN	1	1	Median	1.0008	1.2	NaN	1	0	Median	0.98214	0.97557	23.235	2	0	Median	0.93598	1.0368	40.371	2	0	Median	397970000	197080000	200890000	70711000	29289000	41422000	91503000	49174000	42329000	138940000	69900000	69042000	96815000	48713000	48102000	6283	3904	5929	39229;39230;39231;39232;39233;39234;39235	53609;53610;53611;53612;53613;53614;53615;53616;53617;53618	53610			10	
AYQIDPTLRK	1	Unmodified	1203.6612	0.66117189	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	34.306	33.685	3	2.6218E-06	29314	160511_QHF_FH_JSI11i_3	89.171	72.639			1.1643	0.89398	19.446	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.74528	0.87472	7.7436	2	0	Median	0.92214	0.86499	NaN	1	0	Median	1.2702	1.2722	NaN	1	0	Median	233720000	115120000	118600000	0	0	0	63854000	40344000	23511000	76858000	30655000	46203000	93010000	44123000	48887000	6284	3516	5930	39236;39237;39238;39239	53619;53620;53621;53622;53623	53620			5	
AYQKQPTIFQNK	2	Acetyl (K)	1506.7831	0.78307794	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.2	0.433							3	1			1	3		57.157	46.303	2	0.00013129	26603	160513_QHF_FH_JSI11Kac_4	97.915	78.644			3.0064	3.0197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0064	3.0197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22559000	17457000	5102800	0	0	0	1270300	0	1270300	21289000	17457000	3832500	0	0	0	6285	1996	5931	39240;39241;39242;39243	53624;53625;53626;53627	53626	2025		4	
AYQQSEAYK	1	Unmodified	1086.4982	0.49818889	5193	Q9P0W2	HMG20B	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.913	10.677	2	0.0032261	8474	160511_QHF_FH_JSI10i_1	71.379	32.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13671000	13671000	0	0	0	0	13671000	13671000	0	0	0	0	0	0	0	6286	5193	5932	39244	53628	53628			1	
AYSDPSTGEPATYGELQQR	0	Unmodified	2068.9338	0.93377751	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.819	43.155	2	1.0997E-53	39126	160511_QHF_FH_JSI11i_1	214.23	203.02			1.1787	1.0869	10.007	4	0	Median	1.2585	1.0493	NaN	1	0	Median	0.85874	1.0265	NaN	1	0	Median	1.3104	1.2818	NaN	1	0	Median	1.1039	1.1258	NaN	1	0	Median	313380000	140710000	172670000	66822000	30191000	36631000	77342000	41505000	35837000	85152000	34477000	50675000	84065000	34536000	49529000	6287	2636	5933	39245;39246;39247;39248	53629;53630;53631;53632;53633;53634;53635;53636;53637	53630			9	
AYSDQAIVNLLK	1	Unmodified	1333.7242	0.72416608	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	3	2	2	79.76	79.11	2	4.0364E-18	68452	160511_QHF_FH_JSI12i_2	169.37	148.38			0.95638	1.0022	19.231	10	4	Median	0.98453	0.85497	17.916	3	2	Median	0.92902	1.09	15.029	3	2	Plateau	1.2352	1.2294	5.9615	2	0	Median	0.98249	1.0479	17.679	2	0	Median	875260000	418970000	456290000	202510000	110530000	91983000	259930000	130320000	129610000	225100000	93563000	131540000	187720000	84558000	103160000	6288	3860	5934	39249;39250;39251;39252;39253;39254;39255;39256;39257;39258	53638;53639;53640;53641;53642;53643;53644;53645;53646;53647;53648;53649;53650;53651	53641			14	
AYSEAHEISK	1	Unmodified	1133.5353	0.53530267	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.44	7	8	6				6	8	3	8	10	9	11	13.506	9.388	2;3	1.6412E-14	8496	160511_QHF_FH_JSI10i_2	166.07	116.65			0.91832	0.94462	18.927	38	1	Median	1.13	0.95009	13.212	8	0	Median	0.82182	0.96995	27.713	10	1	Median	0.91576	0.89685	9.2878	9	0	Median	0.7907	0.87197	19.354	11	0	Median	10644000000	5214400000	5429900000	2017800000	929800000	1088000000	2344500000	1187700000	1156700000	3560800000	1771800000	1789100000	2721200000	1325100000	1396100000	6289	1976	5935	39259;39260;39261;39262;39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273;39274;39275;39276;39277;39278;39279;39280;39281;39282;39283;39284;39285;39286;39287;39288;39289;39290;39291;39292;39293;39294;39295;39296	53652;53653;53654;53655;53656;53657;53658;53659;53660;53661;53662;53663;53664;53665;53666;53667;53668;53669;53670;53671;53672;53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684;53685;53686;53687;53688;53689;53690;53691;53692;53693;53694;53695;53696;53697;53698;53699;53700;53701;53702	53695			49	
AYSEALAAFGNGALFVEK	1	Unmodified	1856.9309	0.93086439	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	3	2	95.341	94.997	2;3	2.8605E-11	83363	160511_QHF_FH_JSI11i_2	135.58	116.84			0.43575	0.44592	17.816	7	7	Median	0.50834	0.44592	NaN	1	1	Median	0.35615	0.43805	26.969	2	2	Median	0.45583	0.4633	15.604	2	2	Median	0.46655	0.52129	24.26	2	2	Median	245280000	176300000	68988000	45851000	34039000	11812000	65609000	46491000	19119000	83101000	58373000	24729000	50723000	37394000	13329000	6290	1002	5936	39297;39298;39299;39300;39301;39302;39303;39304	53703;53704;53705;53706;53707;53708;53709;53710	53707			8	
AYSFAMGCWPK	1	Unmodified	1316.5682	0.56819948	331	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	74.185	68.853	2	2.7713E-07	36763	160513_QHF_FH_JSI11Kac_6	113.62	89.533			1.1936	1.1161	21.837	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.94679	1.1161	NaN	1	1	Median	0.95687	0.93631	NaN	1	0	Median	1.4888	1.4453	NaN	1	0	Median	130980000	69217000	61758000	0	0	0	45004000	24953000	20051000	40972000	24808000	16164000	44999000	19457000	25543000	6291	331	5937	39305;39306;39307	53711;53712;53713;53714	53711			4	
AYSFAMGCWPK	1	Oxidation (M)	1332.5631	0.5631141	331	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		66.494	56.855	2	0.013334	30819	160513_QHF_FH_JSI11Kac_6	64.654	60.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6292	331	5937	39308	53715	53715		130	1	
AYSIGLALSTLWNQLSLLPVPYSK	1	Unmodified	2633.4469	0.44687559	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									6	3	3			102.24	94.782	2;3;4	5.2371E-173	57029	160513_QHF_FH_JSI10Kac_6	363.26	326.87			0.93457	0.93549	18.266	6	1	Median	1.1867	1.0087	14.961	3	1	Median	0.72874	0.86345	10.172	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1731100000	953210000	777890000	636890000	288330000	348570000	1094200000	664890000	429320000	0	0	0	0	0	0	6293	3918	5938	39309;39310;39311;39312;39313;39314	53716;53717;53718;53719;53720;53721;53722;53723	53723			8	
AYSIVIR	0	Unmodified	820.48069	0.48068833	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	1	2	1	50.182	40.45	2	0.001155	21511	160513_QHF_FH_JSI9Kac_6	110.34	48.843			1.0894	1.148	7.8504	6	0	Median	1.4106	1.2032	0.051117	2	0	Median	0.94534	1.1383	NaN	1	0	Median	1.0894	1.0828	9.4635	2	0	Median	0.93865	1.0184	NaN	1	0	Median	122680000	58718000	63959000	31334000	12839000	18495000	31927000	16266000	15661000	42229000	21290000	20939000	17187000	8322300	8864500	6294	641	5939	39315;39316;39317;39318;39319;39320	53724;53725;53726;53727;53728;53729	53726			6	
AYSNWPTYPQLYVK	1	Unmodified	1728.8512	0.8511575	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.59	5.34	4	4	6						3	4	3	5	5	78.428	76.319	2	2.2359E-16	38440	160513_QHF_FH_JSI9Kac_6	164.04	147.41			1.0841	1.0258	13.449	17	6	Median	1.1822	0.99012	12.814	4	1	Median	0.87342	1.0449	15.036	3	1	Plateau	1.0841	1.0258	6.8459	5	2	Median	1.1564	1.1823	17.361	5	2	Median	1708000000	839270000	868760000	293580000	133570000	160010000	404840000	220960000	183880000	596990000	281990000	315000000	412630000	202760000	209870000	6295	595	5940	39321;39322;39323;39324;39325;39326;39327;39328;39329;39330;39331;39332;39333;39334;39335;39336;39337	53730;53731;53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743;53744;53745;53746;53747;53748;53749;53750;53751;53752;53753;53754;53755;53756;53757;53758;53759;53760;53761	53757			32	
AYSPELIVHPVLDSPNAVHEVEK	1	Unmodified	2542.3068	0.30675329	3414	Q8IW45	CARKD	ATP-dependent (S)-NAD(P)H-hydrate dehydratase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			72.381	71.608	4	5.76E-07	63663	160511_QHF_FH_JSI10i_2	66.853	54.19			0.90236	1.1158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90236	1.1158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28503000	15510000	12994000	0	0	0	28503000	15510000	12994000	0	0	0	0	0	0	6296	3414	5941	39338	53762	53762			1	
AYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQK	1	Unmodified	4044.8654	0.86537018	3659	Q8NFJ5	GPRC5A	Retinoic acid-induced protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.89	0.875	4	2	3								1	2	6	90.807	90.485	3;4	2.7797E-16	78518	160511_QHF_FH_JSI12i_3	78.159	76.686			0.94078	0.97272	23.791	8	5	Median	NaN	NaN	NaN	0	0	Median	0.953	1.1071	NaN	1	1	Median	1.1092	1.097	23.262	2	1	Median	0.92872	0.9503	27.165	5	3	Median	285850000	141440000	144410000	0	0	0	29101000	19620000	9481000	97142000	35400000	61741000	159610000	86424000	73188000	6297	3659	5942	39339;39340;39341;39342;39343;39344;39345;39346;39347	53763;53764;53765;53766;53767;53768;53769;53770;53771;53772	53770			10	
AYSQGGGK	1	Acetyl (Protein N-term)	808.37153	0.37153181	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	6	5	2			2							1	2	1	8.4798	5.8203	1;2	0.001226	5806	160511_QHF_FH_JSI12i_1	57.281	46.464			0.95478	0.88648	9.8095	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0183	0.96363	11.802	2	0	Median	0.85417	0.8813	NaN	1	0	Median	126540000	61365000	65176000	0	0	0	0	0	0	72464000	32154000	40310000	54077000	29211000	24865000	6298	3882	5943	39348;39349;39350;39351	53773;53774;53775	53773			3	
AYSQGGGKK	2	Acetyl (Protein N-term)	936.46649	0.46649483	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	5.8836	5.5916	2	0.00088296	3646	160511_QHF_FH_JSI12i_1	63.48	20.233			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6299	3882	5944	39352;39353	53776;53777	53776			2	
AYSSFGGGR	0	Unmodified	900.40898	0.40897995	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.54		4	3					4	4	4	4	3	4	18.095	13.27	2	9.3885E-06	11985	160511_QHF_FH_JSI9i_2	111.82	81.147			0.95874	0.97088	8.9563	15	0	Median	1.2364	1.0441	6.5264	4	0	Median	0.74307	0.88619	2.0278	4	0	Median	1.0426	1.0237	6.2265	3	0	Median	0.8183	0.8708	7.257	4	0	Linear	1471800000	750700000	721150000	481430000	233810000	247610000	249460000	138460000	111000000	182650000	91293000	91360000	558300000	287130000	271170000	6300	2619	5945	39354;39355;39356;39357;39358;39359;39360;39361;39362;39363;39364;39365;39366;39367;39368	53778;53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789	53783			12	
AYSSNEVEK	1	Unmodified	1025.4666	0.46655441	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.451	10.067	2	0.0017952	7982	160511_QHF_FH_JSI12i_1	67.494	48.718			0.81416	0.8692	17.163	4	0	Median	1.355	1.1283	NaN	1	0	Median	0.73594	0.87147	NaN	1	0	Median	0.78085	0.74634	NaN	1	0	Median	0.8489	0.86693	NaN	1	0	Median	299290000	156780000	142510000	77569000	28717000	48852000	73981000	45815000	28165000	62078000	30448000	31630000	85666000	51799000	33867000	6301	4653	5946	39369;39370;39371;39372	53790;53791;53792;53793;53794;53795	53792			6	
AYSTTSIASVAGLTAAAYR	0	Unmodified	1872.9581	0.95814177	3381	Q86Y39	NDUFA11	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	80.514	79.991	2;3	1.2666E-13	70357	160511_QHF_FH_JSI11i_2	116.19	100.65			0.70624	0.76003	31.313	6	4	Median	0.65231	0.57359	NaN	1	1	Median	0.63107	0.76367	NaN	1	0	Median	1.3379	1.2224	34.598	3	3	Plateau	0.72	0.75642	NaN	1	0	Median	110920000	49232000	61691000	15415000	6631700	8783200	14866000	8154400	6711700	66768000	28003000	38765000	13874000	6443100	7430500	6302	3381	5947	39373;39374;39375;39376;39377;39378;39379;39380	53796;53797;53798;53799;53800;53801;53802;53803	53801			7	
AYTALHYLSHLSPGK	1	Unmodified	1656.8624	0.86239089	735	O95825	CRYZL1	Quinone oxidoreductase-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.7	6.13			4						8	3	4	3	2	63.668	57.194	3;4	7.1084E-17	30040	160513_QHF_FH_JSI9Kac_6	134.25	124.68			1.0611	1.0432	20.129	12	1	Median	1.3261	1.1347	7.7693	3	0	Plateau	0.83849	0.97962	22.319	4	1	Median	0.98891	0.95368	25.059	3	0	Median	1.1229	1.2169	9.3886	2	0	Median	539290000	251370000	287920000	166900000	73696000	93209000	181490000	91506000	89984000	156780000	70909000	85871000	34120000	15264000	18857000	6303	735	5948	39381;39382;39383;39384;39385;39386;39387;39388;39389;39390;39391;39392	53804;53805;53806;53807;53808;53809;53810;53811;53812;53813;53814;53815;53816	53810			10	
AYTGFSSNSER	0	Unmodified	1217.5313	0.53127993	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.71	6	4	2				1	3		3	3	7	3	20.268	18.409	2	6.2537E-13	15016	160511_QHF_FH_JSI12i_3	144.77	140.84			1.0343	1.0117	26.836	12	1	Median	1.1744	1.0012	28.686	3	0	Median	1.1442	1.3758	51.212	2	0	Median	1.1099	1.0758	12.014	4	1	Median	0.83363	0.89787	11.928	3	0	Median	1316000000	613880000	702080000	211670000	95313000	116350000	340270000	167480000	172790000	460150000	197050000	263100000	303870000	154040000	149830000	6304	279	5949	39393;39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407;39408	53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841	53841			25	
AYTIDPSNPMVLNHLANHFFFK	1	Unmodified	2575.2682	0.26819972	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	95.519	91.802	3;4	1.434E-146	42951	160513_QHF_FH_JSI12Kac_6	262.25	245.75			0.98	0.93426	63.194	9	2	Median	0.43801	0.36484	126.68	2	1	Median	0.85265	1.0013	9.7946	2	1	Median	1.0664	1.0088	11.626	2	0	Median	0.99154	0.99874	10.715	3	0	Plateau	2604800000	1449400000	1155400000	485390000	354710000	130690000	514420000	270330000	244090000	520560000	270770000	249790000	1084400000	553550000	530850000	6305	3115	5950	39409;39410;39411;39412;39413;39414;39415;39416;39417	53842;53843;53844;53845;53846;53847;53848;53849;53850	53849			9	
AYTIDPSNPMVLNHLANHFFFK	1	Oxidation (M)	2591.2631	0.26311434	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	87.15	78.119	4	9.6892E-17	41843	160513_QHF_FH_JSI12Kac_6	120.31	113.2			1.1515	1.0907	15.899	2	0	Median	1.1592	0.97476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1438	1.2205	NaN	1	0	Median	156660000	75210000	81453000	58934000	27962000	30972000	0	0	0	0	0	0	97729000	47249000	50481000	6306	3115	5950	39418;39419	53851;53852	53852		2200	2	
AYTNFDAER	0	Unmodified	1085.4778	0.47778779	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.24	4	3				2	4	1		3	3	4	4	29.103	24.211	2	5.158E-07	21058	160511_QHF_FH_JSI9i_1	138.4	134.04			0.92484	0.90448	13.782	14	0	Median	0.99497	0.89104	8.2259	3	0	Plateau	0.68689	0.81565	27.983	3	0	Median	0.88991	0.89293	7.1	4	0	Median	0.90991	0.95855	7.7874	4	0	Median	3328200000	1802000000	1526200000	700740000	359020000	341710000	759270000	451920000	307350000	822430000	447490000	374940000	1045700000	543540000	502180000	6307	870	5951	39420;39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431;39432;39433	53853;53854;53855;53856;53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871	53866			18	
AYTNFDAERDALNIETAIK	1	Unmodified	2154.0593	0.059312378	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.72	7	13	7							2	5	9	11	78.949	78.402	2;3	2.6527E-98	68040	160511_QHF_FH_JSI12i_3	284.25	252.18			1.0276	1.0591	12.576	27	14	Median	1.0697	0.89191	1.4964	2	1	Median	0.90391	1.0591	7.3624	5	2	Median	1.1118	1.1032	16.871	9	5	Median	0.95932	1.0564	10.07	11	6	Median	34358000000	15350000000	19008000000	2056400000	1023300000	1033100000	4406800000	2024300000	2382600000	10485000000	4687200000	5798000000	17409000000	7615300000	9794200000	6308	870	5952	39434;39435;39436;39437;39438;39439;39440;39441;39442;39443;39444;39445;39446;39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458;39459;39460	53872;53873;53874;53875;53876;53877;53878;53879;53880;53881;53882;53883;53884;53885;53886;53887;53888;53889;53890;53891;53892;53893;53894;53895;53896;53897;53898;53899;53900;53901;53902;53903;53904;53905;53906;53907;53908;53909;53910;53911;53912;53913;53914;53915;53916;53917;53918;53919;53920;53921;53922;53923;53924;53925;53926	53921			55	
AYTPPEDLQSR	0	Unmodified	1275.6095	0.60953025	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2					2	2	2	35.097	31.943	2	2.5268E-05	28344	160511_QHF_FH_JSI10i_1	100.48	89.325			1.0781	1.0665	35.684	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0781	1.0665	NaN	1	0	Median	0.94401	1.003	50.216	2	0	Median	429820000	223120000	206690000	0	0	0	0	0	0	229590000	111360000	118220000	200230000	111760000	88468000	6309	3549	5953	39461;39462;39463;39464;39465;39466	53927;53928;53929;53930;53931;53932;53933;53934	53931			8	
AYTSPLIDMFNNPATAAPNSQR	0	Unmodified	2378.1325	0.1324941	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	90.446	89.893	3	9.3356E-06	79812	160511_QHF_FH_JSI10i_2	66.636	54.68			1.0854	1.1356	16.743	4	2	Median	1.2525	1.0919	NaN	1	1	Median	0.95393	1.181	NaN	1	1	Median	1.2351	1.2548	NaN	1	0	Median	0.80348	0.85685	NaN	1	0	Median	98331000	52201000	46131000	24216000	14112000	10104000	30760000	16526000	14235000	20177000	9198500	10978000	23178000	12364000	10814000	6310	5310	5954	39467;39468;39469;39470	53935;53936;53937;53938	53938			4	
AYTTQSLASVAYQINALANNVLQLLDIQASQLR	0	Unmodified	3589.9104	0.9104103	3484	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.56	99.839	3	2.9785E-143	59152	160513_QHF_FH_JSI10Kac_6	253.6	232.73			1.0688	1.2803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0688	1.2803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154340000	76359000	77981000	0	0	0	154340000	76359000	77981000	0	0	0	0	0	0	6311	3484	5955	39471	53939	53939			1	
AYTTQSLASVAYQINALANNVLQLLDIQASQLRR	0	Unmodified	3746.0115	0.01152133	3484	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			104.13	98.414	4	3.5261E-41	58235	160513_QHF_FH_JSI10Kac_6	142.37	129.5			0.98124	1.1649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98124	1.1649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217250000	139850000	77401000	0	0	0	217250000	139850000	77401000	0	0	0	0	0	0	6312	3484	5956	39472	53940	53940			1	
AYTVLLYGNGPGYVLK	1	Unmodified	1726.9294	0.92940782	831	P05187;P10696	ALPP;ALPPL2	Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.319	75.077	2	1.505E-120	41141	160513_QHF_FH_JSI11Kac_6	265.61	227.62			1.3263	1.3116	6.4913	4	2	Median	1.6012	1.3609	NaN	1	1	Median	1.0105	1.2021	NaN	1	1	Median	1.3461	1.2642	NaN	1	0	Median	1.3067	1.3808	NaN	1	0	Median	208070000	88247000	119820000	40383000	13130000	27253000	72730000	32471000	40259000	76613000	32093000	44519000	18343000	10553000	7790600	6313	831	5957	39473;39474;39475;39476	53941;53942;53943;53944;53945;53946;53947	53943			7	
AYVAVDGIPQGVLER	0	Unmodified	1585.8464	0.84640648	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.873	73.308	2	0.00025365	66839	160511_QHF_FH_JSI12i_1	101.93	83.617			0.67208	0.68766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67208	0.68766	NaN	1	1	Median	24295000	14308000	9987700	0	0	0	0	0	0	0	0	0	24295000	14308000	9987700	6314	1094	5958	39477	53948	53948			1	
AYVDDTPAEQMK	1	Oxidation (M)	1382.6024	0.60239596	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	5.88	6				1	4				2	2	2	5	26.551	22.718	2	1.4836E-08	12386	160513_QHF_FH_JSI11Kac_3	116.3	88.562			1.0313	1.0913	44.248	11	4	Median	0.88805	0.72375	54.052	2	2	Median	1.101	1.2999	8.8582	2	0	Median	1.1029	1.0595	13.38	2	0	Median	0.99985	1.0913	55.46	5	2	Median	453870000	211360000	242510000	159210000	82780000	76430000	76379000	32685000	43693000	70145000	31792000	38353000	148140000	64100000	84037000	6315	878	5959	39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488	53949;53950;53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961	53952		425	12	
AYVDDTPAEQMK	1	Unmodified	1366.6075	0.60748134	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	37.069	32.889	2	9.7296E-42	28927	160511_QHF_FH_JSI9i_1	204.52	186.7			0.81462	0.91689	11.354	7	0	Median	1.1126	0.91689	NaN	1	0	Median	0.79092	0.92953	5.0031	2	0	Median	0.89652	0.87801	16.411	2	0	Median	0.8395	0.89747	21.061	2	0	Median	3024700000	1533500000	1491200000	730520000	317030000	413490000	915020000	500840000	414180000	779250000	391230000	388020000	599880000	324400000	275480000	6316	878	5959	39489;39490;39491;39492;39493;39494;39495	53962;53963;53964;53965;53966;53967;53968;53969;53970;53971;53972;53973;53974;53975;53976;53977;53978	53974			17	
AYVDDTPAEQMKAER	1	Acetyl (K)	1764.7989	0.79886394	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						4	2				2	1	3	56.018	46.261	2;3	2.5018E-32	24904	160513_QHF_FH_JSI12Kac_3	165.7	151.54			0.94154	1.0277	29.997	4	0	Median	NaN	NaN	NaN	0	0	Median	0.83866	0.99592	NaN	1	0	Median	0.91227	0.87939	NaN	1	0	Median	1.2569	1.359	35.08	2	0	Median	38598000	20417000	18181000	0	0	0	14569000	7907500	6661700	4326300	2439300	1887000	19702000	10070000	9632100	6317	878	5960	39496;39497;39498;39499;39500;39501	53979;53980;53981;53982;53983;53984;53985;53986	53982	586		8	
AYVDDTPAEQMKAER	1	Acetyl (K);Oxidation (M)	1780.7938	0.79377856	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.386					2	9					3	3	5	38.99	30.175	2;3	1.1023E-10	17171	160513_QHF_FH_JSI12Kac_3	123.8	99.457			0.87056	0.97626	73.065	9	1	Median	NaN	NaN	NaN	0	0	Median	0.82864	0.97626	7.117	3	0	Median	2.9149	2.7817	158.51	2	1	Median	0.89862	0.9786	8.8178	4	0	Median	43965000	21155000	22811000	0	0	0	10414000	5541400	4872900	8814900	4462300	4352600	24736000	11151000	13585000	6318	878	5960	39502;39503;39504;39505;39506;39507;39508;39509;39510;39511;39512	53987;53988;53989;53990;53991;53992;53993;53994;53995;53996;53997;53998;53999	53991	586	425	12	
AYVEANQMLGDLIK	1	Unmodified	1563.7967	0.79667909	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	3	4	4	87.676	87.138	2;3	6.24E-22	75313	160511_QHF_FH_JSI12i_2	210.91	184.24			0.95764	0.97743	25.827	14	4	Median	1.0733	0.90375	10.662	3	2	Plateau	0.82325	0.98189	6.6575	3	0	Median	0.92554	0.9059	45.095	4	2	Median	0.88012	0.98278	14.432	4	0	Linear	471040000	235580000	235460000	71142000	29718000	41424000	128020000	66892000	61128000	143910000	73921000	69987000	127970000	65047000	62919000	6319	1002	5961	39513;39514;39515;39516;39517;39518;39519;39520;39521;39522;39523;39524;39525;39526	54000;54001;54002;54003;54004;54005;54006;54007;54008;54009;54010;54011;54012;54013;54014;54015;54016;54017;54018;54019	54004			20	
AYVEKFSYK	2	Acetyl (K)	1175.5863	0.58627561	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		59.267	48.427	2	0.0039033	27737	160513_QHF_FH_JSI11Kac_4	80.239	49.669			0.62548	0.72757	134.71	3	3	Median	NaN	NaN	NaN	0	0	Median	0.62548	0.72757	NaN	1	1	Median	0.64731	0.63419	190.18	2	2	Median	NaN	NaN	NaN	0	0	Median	25303000	14514000	10789000	0	0	0	3007400	1869600	1137800	22295000	12644000	9651000	0	0	0	6320	943	5962	39527;39528;39529	54020;54021;54022	54020	707		3	
AYVHEFK	1	Unmodified	892.4443	0.44430282	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.7		6	5						8	5	5	6	3	19.263	15.939	2;3	0.0032911	12715	160511_QHF_FH_JSI11i_2	62.717	34.611			0.99896	1.0922	31.142	13	5	Median	1.3387	1.1331	49.641	4	3	Median	0.92954	1.1209	21.193	4	0	Median	1.0268	0.99912	18.144	4	1	Median	0.76139	0.79702	NaN	1	1	Median	794880000	406340000	388530000	71873000	23286000	48588000	265420000	147380000	118040000	450530000	231850000	218680000	7047100	3826700	3220400	6321	4715	5963	39530;39531;39532;39533;39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544;39545;39546;39547;39548	54023;54024;54025;54026;54027;54028;54029;54030;54031;54032;54033;54034;54035;54036;54037;54038;54039;54040;54041;54042;54043	54032			21	
AYVHEFKFR	1	Acetyl (K)	1237.6244	0.62439245	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	53.497	44.14	2;3	8.6956E-05	24230	160513_QHF_FH_JSI10Kac_6	99.653	89.7			0.84815	0.88929	30.151	7	0	Median	1.091	0.9321	NaN	1	0	Median	0.8958	1.0731	5.611	2	0	Median	0.56056	0.54029	16.391	2	0	Median	0.81368	0.86157	4.4789	2	0	Median	238010000	142250000	95763000	21765000	9098000	12667000	74972000	40833000	34138000	91889000	63659000	28230000	49387000	28659000	20728000	6322	4715	5964	39549;39550;39551;39552;39553;39554;39555;39556;39557	54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056	54055	3221		13	
AYVLLGDDSFLER	0	Unmodified	1496.7511	0.75110911	4571	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.473	85.446	2	0.0010974	73768	160511_QHF_FH_JSI12i_2	76.465	58.153			1.4458	1.6174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4458	1.6174	NaN	1	1	Median	9032600	4300400	4732200	0	0	0	0	0	0	0	0	0	9032600	4300400	4732200	6323	4571	5965	39558	54057	54057			1	
AYVLLLR	0	Unmodified	846.53272	0.5327239	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	71.726	62.558	2	3.7081E-05	33943	160513_QHF_FH_JSI11Kac_6	128	68.001			1.2396	1.1314	5.8467	5	0	Median	1.3167	1.1086	9.9568	2	0	Median	0.9475	1.1314	NaN	1	0	Median	1.2502	1.1831	NaN	1	0	Median	1.0681	1.0945	NaN	1	0	Median	219270000	101130000	118140000	27734000	13249000	14485000	97371000	46873000	50498000	74856000	31384000	43473000	19306000	9620100	9686300	6324	5447	5966	39559;39560;39561;39562;39563	54058;54059;54060;54061;54062	54059			5	
AYVLYMK	1	Oxidation (M)	902.45718	0.45717569	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.737							2	4	3	2	2	2	3	42.767	32.956	2	0.0052595	18065	160513_QHF_FH_JSI9Kac_5	91.26	72.529			1.0985	1.0618	13.412	9	0	Median	1.2544	1.0701	1.098	2	0	Median	0.76588	0.90586	17.235	2	0	Median	1.2096	1.1808	13.073	2	0	Median	0.99069	1.0432	10.97	3	0	Median	77523000	40884000	36639000	19758000	9880600	9877100	13991000	7736700	6254300	24431000	12336000	12094000	19343000	10930000	8413000	6325	1501	5967	39564;39565;39566;39567;39568;39569;39570;39571;39572	54063;54064;54065;54066;54067;54068;54069;54070;54071;54072	54063		1178	10	
AYVLYMK	1	Unmodified	886.46226	0.46226107	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.25		1					1	3	4	3	2	2	2	56.95	47.177	2	0.0054387	25458	160513_QHF_FH_JSI11Kac_6	94.669	82.764			1.0167	1.0824	19.316	6	1	Median	1.1934	1.0163	23.565	2	0	Median	0.79271	0.92988	32.441	2	1	Median	1.1658	1.1213	NaN	1	0	Median	0.97737	1.0449	NaN	1	0	Median	324190000	156940000	167250000	90348000	44555000	45793000	82330000	44924000	37406000	121690000	50957000	70736000	29815000	16503000	13312000	6326	1501	5967	39573;39574;39575;39576;39577;39578;39579;39580;39581	54073;54074;54075;54076;54077;54078;54079;54080;54081;54082;54083;54084;54085	54074			13	
AYVPALQMAFK	1	Unmodified	1237.6529	0.65291539	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3	2	2	2	1	80.478	76.076	2	3.7525E-06	70284	160511_QHF_FH_JSI10i_2	116.73	88.552			1.9692	1.9213	122.61	7	7	Median	6.5216	5.4303	181.17	2	2	Median	1.3295	1.5578	29.656	2	2	Median	6.3442	6.0534	165.07	2	2	Median	8.248	8.8691	NaN	1	1	Median	2231100000	444180000	1786900000	611720000	51693000	560020000	594830000	243360000	351480000	874420000	136770000	737650000	150100000	12360000	137740000	6327	2094	5968	39582;39583;39584;39585;39586;39587;39588	54086;54087;54088;54089;54090;54091;54092;54093	54090			8	
AYVPALQMAFK	1	Oxidation (M)	1253.6478	0.64783001	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		75.175	64.479	2	0.040693	34428	160513_QHF_FH_JSI11Kac_5	50.878	32.098			0.70224	0.68969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70224	0.68969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5194500	2908400	2286100	0	0	0	0	0	0	5194500	2908400	2286100	0	0	0	6328	2094	5968	39589	54094	54094			1	
AYVRDPYALDLIDK	1	Unmodified	1650.8617	0.86172219	1717	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	68.452	68.254	2;3	4.0632E-05	59008	160511_QHF_FH_JSI12i_3	98.312	79.947			0.86688	0.88615	14.499	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1437	1.0538	NaN	1	0	Median	0.8534	0.83675	8.1114	2	0	Median	476540000	246640000	229900000	0	0	0	0	0	0	149900000	73913000	75984000	326650000	172730000	153920000	6329	1717	5969	39590;39591;39592;39593	54095;54096;54097;54098;54099;54100	54097			6	
AYVRLAPDYDALDVANK	1	Unmodified	1892.9632	0.96322715	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			68.855	67.375	3	3.3678E-08	56395	160511_QHF_FH_JSI10i_3	128.26	112.87			0.17689	0.19866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17689	0.19866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31028000	26371000	4657000	0	0	0	31028000	26371000	4657000	0	0	0	0	0	0	6330	2017	5970	39594	54101	54101			1	
AYVSLFMR	0	Unmodified	985.50552	0.50552287	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	69.878	64.404	2	4.6005E-16	35338	160513_QHF_FH_JSI10Kac_6	177.65	155.52			1.0678	1.0826	12.77	7	1	Median	1.29	1.0543	15.386	2	0	Median	0.87452	1.021	16.673	2	0	Median	1.2144	1.1379	NaN	1	0	Median	0.93085	0.96464	16.318	2	1	Median	1260100000	615650000	644460000	264620000	109130000	155490000	449680000	230390000	219300000	199160000	94647000	104510000	346650000	181490000	165160000	6331	2578;2318	5971	39595;39596;39597;39598;39599;39600;39601;39602	54102;54103;54104;54105;54106;54107;54108;54109;54110;54111;54112;54113;54114	54114			13	
AYVSLFMR	0	Oxidation (M)	1001.5004	0.50043749	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.495								4	3	2	2	1	2	64.288	54.254	2	0.0021419	29822	160513_QHF_FH_JSI10Kac_6	89.369	62.767			1.0291	1.1207	4.1713	7	1	Median	1.3821	1.1777	0.65476	2	1	Median	0.92549	1.1151	0.70674	2	0	Median	1.2257	1.2006	NaN	1	0	Median	1.012	1.0885	1.8495	2	0	Median	454750000	224800000	229940000	99314000	36783000	62531000	262490000	142870000	119630000	1680900	744710	936220	91258000	44407000	46851000	6332	2578;2318	5971	39603;39604;39605;39606;39607;39608;39609	54115;54116;54117;54118;54119	54118		1910	5	
AYVSTLMGVPGR	0	Unmodified	1249.6489	0.64889264	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.63	2	4	4					1	5	5	4	4	3	61.281	57.748	2	2.086E-31	51513	160511_QHF_FH_JSI11i_3	190.24	169.33			1.0964	1.0718	22.089	15	5	Median	1.2439	1.0696	24.938	4	2	Median	1.02	1.1998	11.109	4	1	Median	1.1124	1.0648	30.044	4	1	Median	0.78045	0.97051	15.593	3	1	Plateau	3485500000	1685100000	1800400000	504550000	200810000	303740000	757700000	385770000	371920000	1161700000	570570000	591180000	1061500000	527910000	533580000	6333	120	5972	39610;39611;39612;39613;39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625	54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138;54139;54140;54141;54142;54143;54144;54145	54121			26	
AYVSTLMGVPGR	0	Oxidation (M)	1265.6438	0.64380726	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.58			5				3	4	5	4	3	6	4	50.58	43.671	2	4.9413E-12	23225	160513_QHF_FH_JSI9Kac_5	119.68	108.85			1.0067	0.97954	21.23	14	4	Median	1.6729	1.3813	19.273	3	1	Median	1.042	1.2084	17.287	3	0	Plateau	0.97258	0.9641	16.968	5	3	Median	1.1409	1.1494	25.261	3	0	Plateau	325650000	142660000	182990000	36007000	12547000	23459000	53102000	27445000	25657000	149300000	60025000	89271000	87240000	42643000	44597000	6334	120	5972	39626;39627;39628;39629;39630;39631;39632;39633;39634;39635;39636;39637;39638;39639;39640;39641;39642	54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161;54162;54163;54164	54150		52	19	
AYVTHYLDK	1	Unmodified	1108.5553	0.55530983	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.807	28.753	2	0.0002824	24145	160511_QHF_FH_JSI12i_3	87.476	54.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6335	2793	5973	39643	54165	54165			1	
AYVTKSPVDAGK	2	Acetyl (K)	1276.6663	0.66631685	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	44.194	35.162	2	2.8421E-16	19837	160513_QHF_FH_JSI11Kac_3	145.99	117.07			0.85886	0.94551	16.848	6	0	Median	NaN	NaN	NaN	0	0	Median	0.84773	1.0127	5.3447	2	0	Median	0.77402	0.75137	16.163	2	0	Median	0.91539	0.97453	8.6437	2	0	Median	125120000	70509000	54609000	0	0	0	35359000	20900000	14459000	41410000	24182000	17228000	48349000	25428000	22921000	6336	4027	5974	39644;39645;39646;39647;39648;39649	54166;54167;54168;54169;54170;54171;54172	54167	3034		7	
AYVVLGQFLVLK	1	Unmodified	1348.8119	0.81185887	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.26		4	3	4	2	4	3	4	39	13	10	26	14	97.399	89.855	2;3	9.9487E-50	44985	160513_QHF_FH_JSI12Kac_6	207.95	186.49			1.1007	1.0777	47.294	48	11	Median	1.1591	1.0841	26.16	13	4	Median	0.90118	0.95793	57.449	9	1	Median	0.98812	0.98268	28.625	17	6	Median	1.2597	1.3422	75.787	9	0	Median	57404000000	25902000000	31502000000	9172900000	4022700000	5150100000	10941000000	5260800000	5680200000	28741000000	13277000000	15464000000	8548800000	3341600000	5207200000	6337	541	5975	39650;39651;39652;39653;39654;39655;39656;39657;39658;39659;39660;39661;39662;39663;39664;39665;39666;39667;39668;39669;39670;39671;39672;39673;39674;39675;39676;39677;39678;39679;39680;39681;39682;39683;39684;39685;39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696;39697;39698;39699;39700;39701;39702;39703;39704;39705;39706;39707;39708;39709;39710;39711;39712	54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201;54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217;54218;54219;54220;54221;54222;54223;54224;54225;54226;54227;54228;54229;54230;54231;54232;54233;54234;54235;54236;54237;54238;54239;54240;54241;54242;54243;54244;54245;54246;54247;54248;54249;54250;54251;54252;54253;54254	54242			75	
AYVVLGQFLVLKK	2	Unmodified	1476.9068	0.90682189	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	2	3	1	84.341	77.045	2;3	1.2902E-50	42221	160513_QHF_FH_JSI11Kac_6	198.58	177.71			0.8975	0.70324	39.92	4	4	Linear	0.72846	0.61952	NaN	1	1	Median	0.81258	0.97378	43.913	2	2	Median	1.3926	1.3077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1414400000	759390000	655030000	482680000	270460000	212220000	567720000	312870000	254840000	364030000	176060000	187970000	0	0	0	6338	541	5976	39713;39714;39715;39716;39717;39718;39719;39720	54255;54256;54257;54258;54259;54260;54261;54262	54257			8	
AYVWDNNK	1	Unmodified	1008.4665	0.46649483	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			32.809	31.865	2	0.0018911	27974	160511_QHF_FH_JSI10i_2	81.784	50.555			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6339	2348	5977	39721	54263	54263			1	
AYYAGHVLGAAMFQIK	1	Unmodified	1738.8865	0.88649715	2959	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.25	5.63			3						1	3	1			78.241	76.846	3	0.00052771	63231	160511_QHF_FH_JSI9i_3	64.104	51.938			0.86276	0.7319	NaN	1	1	Median	0.86276	0.7319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10119000	6590000	3528800	10119000	6590000	3528800	0	0	0	0	0	0	0	0	0	6340	2959	5978	39722;39723;39724;39725	54264;54265;54266;54267;54268	54265			5	
AYYLTENDMER	0	Unmodified	1403.6027	0.60273031	4139	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.927	43.705	2	0.011208	38854	160511_QHF_FH_JSI9i_1	46.001	25.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6341	4139	5979	39726	54269	54269			1	
AYYQLAK	1	Unmodified	855.44905	0.44905385	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.62	3	2					2	3		1	3	3	3	30.837	25.829	2	0.018158	21652	160511_QHF_FH_JSI11i_2	65.263	42.64			0.91943	0.96241	9.1309	10	0	Median	1.0796	0.91244	NaN	1	0	Median	0.78753	0.95165	7.3297	3	0	Median	1.0125	0.9733	14.441	3	0	Median	1.0413	1.0875	7.4671	3	0	Plateau	427840000	225020000	202820000	71776000	29991000	41784000	85990000	45944000	40046000	217210000	122510000	94706000	52858000	26572000	26286000	6342	4062	5980	39727;39728;39729;39730;39731;39732;39733;39734;39735;39736	54270;54271;54272;54273;54274;54275;54276	54274			7	
AYYQLAKK	2	Acetyl (K)	1025.5546	0.55458155	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2		1	1	2	1	44.054	33.902	2	0.010385	19329	160513_QHF_FH_JSI10Kac_4	81.297	24.75			0.45286	0.44187	152.68	5	5	Median	2.0827	1.7643	NaN	1	1	Median	2.4859	2.9434	NaN	1	1	Median	0.29972	0.29404	57.601	2	2	Median	0.067426	0.073098	NaN	1	1	Median	104170000	76384000	27790000	4672300	1893200	2779100	14197000	6842700	7353800	80685000	63471000	17214000	4620200	4177400	442840	6343	4062	5981	39737;39738;39739;39740;39741	54277;54278;54279;54280;54281	54278	3040		5	
AYYSPVGKK	2	Unmodified	1011.5389	0.53893149	2095	P78536	ADAM17	Disintegrin and metalloproteinase domain-containing protein 17	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	49.651	39.24	2	0.049797	21970	160513_QHF_FH_JSI11Kac_5	46.426	11.618			0.6993	0.73605	26.881	4	0	Median	NaN	NaN	NaN	0	0	Median	0.4529	0.54822	NaN	1	0	Median	0.88248	0.87382	NaN	1	0	Median	0.6993	0.77201	31.013	2	0	Median	24192000	13752000	10441000	0	0	0	7143400	4598800	2544500	5821700	2829000	2992700	11227000	6323700	4903700	6344	2095	5982	39742;39743;39744;39745	54282	54282			0	
CAADLGLNK	1	Unmodified	960.46987	0.46986564	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.09	5	2				4	3			1	4	3	6	31.553	26.763	2	6.2466E-06	23762	160511_QHF_FH_JSI11i_1	132.08	76.643			3.1232	3.4673	141.45	14	14	Median	4.5248	3.9166	NaN	1	1	Median	2.7026	3.1632	158.69	4	4	Median	3.0029	2.8994	159.89	3	3	Median	4.3643	4.6859	160.91	6	6	Median	2908800000	1550100000	1358700000	23862000	5695800	18166000	1336900000	709840000	627090000	686060000	459120000	226940000	861920000	375390000	486530000	6345	1683	5983	39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758;39759	54283;54284;54285;54286;54287;54288;54289;54290;54291;54292;54293;54294;54295;54296	54283			14	
CAAGLAELAAR	0	Unmodified	1101.5601	0.56007764	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		45.244	44.47	2	0.00066826	38220	160511_QHF_FH_JSI11i_2	82.749	72.763			2.7371	2.5388	31.819	2	2	Median	2.3667	2.0273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.1655	3.1794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89359000	33808000	55551000	20729000	5792000	14937000	0	0	0	68630000	28016000	40614000	0	0	0	6346	2349	5984	39760;39761	54297;54298	54298			2	
CAEGYALYAQALTDQQQFGK	1	Unmodified	2261.0423	0.042282105	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	82.115	80.991	3	5.1724E-05	70032	160511_QHF_FH_JSI12i_2	71.742	63.242			6.2436	6.5607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.2436	6.5607	NaN	1	1	Median	13731000	1198500	12533000	0	0	0	0	0	0	0	0	0	13731000	1198500	12533000	6347	611	5985	39762	54299	54299			1	
CAGNEDIITLR	0	Unmodified	1260.6132	0.61323542	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0			By MS/MS	By matching	5.33	6.13	2						1					2	1	46.725	46.194	2	1.5743E-07	41735	160511_QHF_FH_JSI11i_1	123.62	58.462			1.0855	1.0947	42.894	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83597	0.8083	NaN	1	0	Median	1.4095	1.4826	NaN	1	0	Median	355610000	149210000	206410000	0	0	0	0	0	0	216420000	98488000	117930000	139190000	50718000	88473000	6348	1010	5986	39763;39764;39765	54300;54301	54300			2	
CAHIEAK	1	Unmodified	827.39597	0.39597242	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.2678	5.0736	2	0.059447	2874	160511_QHF_FH_JSI11i_2	45.952	17.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33630000	33630000	0	0	0	0	0	0	0	33630000	33630000	0	0	0	0	6349	4309	5987	39766	54302	54302			1	
CAIGVTHFQLVQMK	1	Unmodified	1630.8324	0.83235309	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			72.474	65.008	3	0.0026124	35795	160513_QHF_FH_JSI10Kac_6	59.607	39.181			1.3511	1.5786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3511	1.5786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24397000	8886600	15510000	0	0	0	24397000	8886600	15510000	0	0	0	0	0	0	6350	3903	5988	39767	54303	54303			1	
CAILTTLIHLVQGLGADSK	1	Unmodified	2009.0979	0.097946491	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.626	90.471	3	3.2051E-05	52221	160513_QHF_FH_JSI9Kac_6	120.4	103.32			0.083476	0.070961	NaN	1	1	Median	0.083476	0.070961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18319000	17773000	545590	18319000	17773000	545590	0	0	0	0	0	0	0	0	0	6351	5323	5989	39768	54304	54304			1	
CALDFFR	0	Unmodified	927.42727	0.42727255	1762	P51970	NDUFA8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	65.558	64.664	2	0.010636	56302	160511_QHF_FH_JSI11i_2	73.975	67.151			0.98951	0.99002	15.409	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99031	1.2041	NaN	1	0	Median	0.98951	0.9885	NaN	1	0	Median	1.1912	1.3392	NaN	1	0	Median	118580000	50336000	68244000	0	0	0	36496000	16701000	19796000	52708000	19529000	33179000	29377000	14107000	15270000	6352	1762	5990	39769;39770;39771	54305;54306	54305			2	
CAMTALSSK	1	Unmodified	967.44669	0.44668736	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2				1	2	4	26.809	21.651	2	0.00010945	18040	160511_QHF_FH_JSI12i_2	110.87	97.883			0.58735	0.59643	139.83	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44266	0.4323	NaN	1	1	Median	0.77933	0.82287	164.98	3	3	Median	204850000	106550000	98298000	0	0	0	0	0	0	11568000	7216200	4351800	193280000	99333000	93947000	6353	4321	5991	39772;39773;39774;39775;39776;39777;39778	54307;54308;54309;54310;54311;54312;54313	54307			7	
CAQIEAK	1	Unmodified	818.39564	0.39563807	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	10.642	3.3187	2	0.0025775	6235	160511_QHF_FH_JSI12i_1	104.21	43.851			0.16986	0.16844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16986	0.16844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5242000	4086900	1155100	0	0	0	0	0	0	5242000	4086900	1155100	0	0	0	6354	1852	5992	39779;39780	54314;54315	54314			2	
CASQSGMTAYGTR	0	Unmodified	1388.5813	0.58128336	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.095	16.742	2	4.8336E-07	14181	160511_QHF_FH_JSI10i_1	94.767	15.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6355	4268	5993	39781;39782	54316;54317	54317			2	
CASQVGMTAPGTR	0	Unmodified	1334.6071	0.60710418	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.817	22.302	2	0.0012488	19527	160511_QHF_FH_JSI12i_1	64.439	54.642			0.92352	0.98785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92352	0.98785	NaN	1	0	Median	43197000	22472000	20725000	0	0	0	0	0	0	0	0	0	43197000	22472000	20725000	6356	4268	5994	39783	54318	54318			1	
CATITPDEK	1	Unmodified	1033.475	0.4750106	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	17.298	14.571	2	6.0548E-05	9347	160513_QHF_FH_JSI11Kac_3	103.56	81.432			1.1634	1.1605	34.932	6	2	Median	1.222	0.99996	NaN	1	0	Median	1.1077	1.2809	NaN	1	0	Median	1.584	1.5433	54.261	2	1	Median	1.2917	1.3873	43.093	2	1	Median	778610000	392220000	386390000	101120000	39135000	61981000	202030000	91932000	110100000	241550000	143790000	97760000	233920000	117370000	116550000	6357	576	5995	39784;39785;39786;39787;39788;39789	54319;54320;54321	54319			3	
CATSKPAFFAEK	2	Acetyl (K)	1397.6649	0.66493664	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	64.285	53.459	2	0.0011103	29077	160513_QHF_FH_JSI10Kac_4	84.17	45.877			0.086589	0.10007	212.99	3	3	Median	NaN	NaN	NaN	0	0	Median	2.7264	3.083	NaN	1	1	Median	0.062106	0.062153	NaN	1	1	Median	0.086589	0.10007	NaN	1	1	Median	6935000	5006100	1928900	0	0	0	2528000	740000	1788000	3471600	3368500	103160	935390	897660	37733	6358	805	5996	39790;39791;39792	54322;54323;54324	54322	438		3	
CAYQILVQVK	1	Unmodified	1220.6587	0.65872905	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.541	60.227	2	8.4985E-05	51718	160511_QHF_FH_JSI12i_2	101.54	87.307			4.3386	4.8645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3386	4.8645	NaN	1	1	Median	9122100	1788400	7333600	0	0	0	0	0	0	0	0	0	9122100	1788400	7333600	6359	1793	5997	39793	54325	54325			1	
CCSGAIIVLTK	1	Unmodified	1220.6257	0.62571436	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.26	6.53	6	5	2	1		2	4	4	7	6	8	10	7	57.535	51.57	2;3	1.1314E-19	28167	160513_QHF_FH_JSI11Kac_5	182.71	160.62			0.9737	1.0459	58.43	30	17	Median	0.75946	0.64661	75.531	6	4	Median	0.7635	0.91181	48.773	8	3	Median	1.0255	1.0139	57.919	9	7	Median	1.3241	1.4551	26.407	7	3	Median	4368500000	2335900000	2032600000	436200000	220880000	215320000	1236900000	720560000	516310000	1908500000	1076200000	832310000	786900000	318250000	468650000	6360	1055	5998	39794;39795;39796;39797;39798;39799;39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821;39822;39823;39824	54326;54327;54328;54329;54330;54331;54332;54333;54334;54335;54336;54337;54338;54339;54340;54341;54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359;54360;54361;54362;54363;54364;54365;54366;54367	54354			42	
CDDLEALK	1	Unmodified	962.4379	0.43789681	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.616	33.035	2	0.0077778	29811	160511_QHF_FH_JSI12i_1	68.383	47.684			3.8959	3.9883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8959	3.9883	NaN	1	1	Median	26676000	5900900	20775000	0	0	0	0	0	0	0	0	0	26676000	5900900	20775000	6361	841	5999	39825	54368	54368			1	
CDENILWLDYK	1	Unmodified	1467.6704	0.67041595	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	79.37	79.028	2	2.2242E-10	71922	160511_QHF_FH_JSI12i_1	154.35	143.82			1.3934	1.4661	21.285	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0243	1.2088	NaN	1	0	Median	0.96746	0.95841	NaN	1	0	Median	1.3934	1.4661	NaN	1	0	Median	369990000	190140000	179850000	0	0	0	113090000	63715000	49378000	111990000	56801000	55191000	144900000	69624000	75277000	6362	1055	6000	39826;39827;39828;39829	54369;54370;54371;54372;54373;54374;54375;54376;54377;54378;54379;54380	54375			12	
CDEPILSNR	0	Unmodified	1102.5077	0.50770771	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	28.58	25.258	2	5.5641E-05	22582	160511_QHF_FH_JSI12i_1	97.635	85.399			1.1408	1.2087	20.622	6	0	Median	1.4855	1.2263	NaN	1	0	Median	1.0081	1.1914	NaN	1	0	Median	0.91858	0.90358	17.607	2	0	Median	1.2676	1.3674	1.4892	2	0	Median	1012500000	456050000	556460000	112810000	34710000	78102000	258680000	121550000	137130000	263500000	135540000	127960000	377520000	164250000	213270000	6363	1343	6001	39830;39831;39832;39833;39834;39835;39836	54381;54382;54383;54384;54385;54386;54387;54388	54383			8	
CDFPIMK	1	Unmodified	909.40885	0.40884529	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.597	47.917	2	0.0088624	43593	160511_QHF_FH_JSI12i_1	81.635	69.203			1.056	1.072	18.398	4	0	Median	1.107	0.94133	NaN	1	0	Median	1.0074	1.1897	NaN	1	0	Median	0.98793	0.96595	NaN	1	0	Median	1.3065	1.389	NaN	1	0	Median	299690000	131850000	167850000	32484000	16247000	16237000	83072000	38990000	44082000	90697000	36982000	53715000	93440000	39628000	53812000	6364	2221	6002	39837;39838;39839;39840	54389;54390;54391	54391			3	
CDFTEDQTAEFK	1	Acetyl (Protein N-term)	1531.6137	0.61368893	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.33	3			1						1	1	1	1	61.022	58.177	2	1.1469E-31	52936	160511_QHF_FH_JSI11i_1	140.16	135.47			1.0746	1.0531	15.898	4	0	Median	1.2554	1.0257	NaN	1	0	Median	0.89471	1.0812	NaN	1	0	Median	0.92188	0.90397	NaN	1	0	Median	1.2526	1.3245	NaN	1	0	Median	294310000	146610000	147700000	73848000	36838000	37011000	79866000	35530000	44336000	139290000	73602000	65683000	1305800	636070	669710	6365	1915	6003	39841;39842;39843;39844	54392;54393;54394;54395;54396;54397	54393			6	
CDFTGTLIVVPDVSK	1	Unmodified	1649.8335	0.83345853	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	87.417	86.994	2	2.0165E-06	79175	160511_QHF_FH_JSI12i_1	125.54	116.11			2.0832	2.0283	54.489	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4631	1.3797	NaN	1	1	Median	2.9661	2.9817	NaN	1	1	Median	42319000	16938000	25380000	0	0	0	0	0	0	24924000	10747000	14177000	17395000	6191300	11203000	6366	2545	6004	39845;39846	54398;54399	54399			2	
CDSSPDSAEDVRK	1	Unmodified	1464.6151	0.61508591	55	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	10.001	9.6791	2;3	9.4918E-07	7578	160511_QHF_FH_JSI12i_1	138.71	115.28		+	0.9999	1.0251	30.947	7	1	Median	1.0449	0.85077	NaN	1	0	Median	0.66239	0.77078	48.82	2	1	Median	1.0523	1.009	34.931	2	0	Median	1.1032	1.1574	17.167	2	0	Median	625110000	311200000	313910000	61331000	30452000	30878000	145380000	79494000	65882000	187270000	92541000	94726000	231140000	108720000	122420000	6367	55	6005	39847;39848;39849;39850;39851;39852;39853	54400;54401;54402;54403;54404	54403			5	
CDVDIRK	1	Unmodified	904.44365	0.44365089	2062;1916;2865	P60709;P63261;Q562R1	ACTB;ACTG1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Beta-actin-like protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.19	6	14	5				4	3		5	7	10	10	13.008	10.738	2;3	0.00098569	9145	160511_QHF_FH_JSI10i_1	100.45	64.571			0.86657	0.9332	82.284	31	21	Median	1.0792	0.9332	81.333	5	4	Median	0.88958	1.067	70.055	6	3	Median	0.71609	0.6989	89.483	10	6	Median	1.1116	1.1887	88.995	10	8	Median	18441000000	9730000000	8710600000	1986400000	836030000	1150300000	4106900000	2222800000	1884100000	7397200000	4105200000	3292100000	4950100000	2566000000	2384200000	6368	1916;2062;2865	6006	39854;39855;39856;39857;39858;39859;39860;39861;39862;39863;39864;39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884;39885	54405;54406;54407;54408;54409;54410;54411;54412;54413;54414;54415;54416;54417;54418;54419;54420;54421;54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439;54440;54441;54442	54421			38	
CEAVVADVLDK	1	Unmodified	1217.5962	0.59618837	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.986	59.345	2	0.00036328	53820	160511_QHF_FH_JSI11i_1	73.499	39.247			1.8783	5.6346	71.009	3	2	Plateau	1.8783	1.5122	NaN	1	1	Median	1.546	1.8358	NaN	1	1	Median	5.7404	5.6346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136450000	45222000	91232000	41771000	15011000	26760000	53423000	25977000	27446000	41260000	4232900	37027000	0	0	0	6369	1747	6007	39886;39887;39888	54443;54444;54445	54443			3	
CEDLETQTQSEK	1	Unmodified	1466.6195	0.61950259	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	15.761	15.528	2	6.0244E-10	13255	160511_QHF_FH_JSI12i_1	124.1	104.83			9.0025	9.0186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.0025	9.0186	NaN	1	1	Median	78221000	34555000	43666000	0	0	0	17157000	17157000	0	36011000	15921000	20090000	25053000	1477300	23576000	6370	155	6008	39889;39890;39891;39892;39893;39894	54446;54447;54448;54449;54450;54451	54449			6	
CEELSGLHGQLQEAR	0	Unmodified	1725.8104	0.81043168	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.115	37.672	2	0.00059481	32196	160511_QHF_FH_JSI11i_2	68.069	61.965			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6371	5213	6009	39895	54452	54452			1	
CEESFVK	1	Unmodified	897.39022	0.39021834	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	18.118	17.694	2	0.0067872	14901	160511_QHF_FH_JSI11i_1	90.777	74.237			2.1219	1.8926	101.59	6	6	Median	1.8417	1.5085	NaN	1	1	Median	2.5028	2.9601	NaN	1	1	Median	0.8635	0.8465	145.87	2	2	Median	1.2873	1.3463	140.28	2	2	Median	953630000	467530000	486100000	106130000	45828000	60302000	123450000	53482000	69963000	417150000	219730000	197420000	306910000	148490000	158420000	6372	893	6010	39896;39897;39898;39899;39900;39901	54453;54454;54455;54456;54457;54458	54453			6	
CEFAVGYQR	0	Unmodified	1128.5022	0.50222841	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.547	35.202	2	0.0001986	29851	160511_QHF_FH_JSI12i_2	85.212	76.871			2.7157	3.0098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7157	3.0098	NaN	1	0	Median	30621000	12401000	18220000	0	0	0	0	0	0	0	0	0	30621000	12401000	18220000	6373	5215	6011	39902	54459	54459			1	
CEFFNAGGSVK	1	Unmodified	1214.539	0.53900784	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0				By MS/MS	2	0		1											1	44.014	42.632	2	0.0030686	36537	160511_QHF_FH_JSI12i_2	69.979	57.352			1.3456	1.4367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3456	1.4367	NaN	1	1	Median	40722000	17357000	23365000	0	0	0	0	0	0	0	0	0	40722000	17357000	23365000	6374	957	6012	39903	54460	54460			1	
CEFQDAYVLLSEK	1	Unmodified	1600.7443	0.74430917	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.63	0.581	8	10	1							5	4	6	4	81.182	80.591	2;3	8.7622E-53	70885	160511_QHF_FH_JSI11i_2	215.85	197.07			1.0464	1.0837	35.676	18	4	Median	1.181	1.0082	46.935	4	1	Median	0.80549	0.95006	18.095	4	0	Median	0.93826	0.9237	46.67	6	3	Median	1.2557	1.3367	5.8638	4	0	Median	2802200000	1426600000	1375600000	304090000	161310000	142780000	645800000	334380000	311410000	1092700000	591670000	501000000	759690000	339250000	420440000	6375	980	6013	39904;39905;39906;39907;39908;39909;39910;39911;39912;39913;39914;39915;39916;39917;39918;39919;39920;39921;39922	54461;54462;54463;54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495	54490			35	
CEGINISGNFYR	0	Unmodified	1428.6456	0.64559818	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	57.655	56.955	2	1.1874E-22	49326	160511_QHF_FH_JSI11i_2	172.61	152.33			1.3007	1.4368	35.826	6	3	Median	NaN	NaN	NaN	0	0	Median	1.6252	1.9211	14.776	2	1	Median	1.0619	1.0479	18.342	2	1	Median	1.223	1.3027	45.739	2	1	Median	834930000	397980000	436950000	0	0	0	261140000	115560000	145580000	343520000	177010000	166500000	230270000	105410000	124860000	6376	1497	6014	39923;39924;39925;39926;39927;39928;39929	54496;54497;54498;54499;54500;54501;54502;54503;54504;54505	54503			10	
CELLYEGPPDDEAAMGIK	1	Unmodified	2006.8965	0.89652907	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										2	4	1	74.136	73.816	2;3	1.7483E-17	67421	160511_QHF_FH_JSI11i_1	129.71	109.28			0.53315	0.51594	37.09	6	5	Median	NaN	NaN	NaN	0	0	Median	0.47909	0.55936	57.433	2	2	Median	0.43927	0.4183	31.187	3	2	Median	0.66066	0.70571	NaN	1	1	Median	609760000	378270000	231490000	0	0	0	172070000	111700000	60368000	331430000	209170000	122260000	106260000	57407000	48857000	6377	1033	6015	39930;39931;39932;39933;39934;39935;39936	54506;54507;54508;54509;54510;54511;54512	54509			7	
CELLYEGPPDDEAAMGIK	1	Oxidation (M)	2022.8914	0.89144369	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		64.37	63.927	2	2.3667E-10	58102	160511_QHF_FH_JSI11i_1	106.49	84.935			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6378	1033	6015	39937	54513	54513		628	1	
CELSSSVQTDINLPYLTMDSSGPK	1	Unmodified	2641.2251	0.22513343	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	94.379	94.209	3	8.1068E-13	85621	160511_QHF_FH_JSI12i_1	100.39	96.988			0.97741	1.0754	34.484	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71273	0.84269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3404	1.3723	NaN	1	0	Median	150020000	73356000	76665000	0	0	0	82997000	52138000	30859000	0	0	0	67024000	21218000	45806000	6379	1480	6016	39938;39939;39940	54514;54515;54516;54517	54516			4	
CEMASTGEVACFGEGIHTAFLK	1	Unmodified	2414.0705	0.070487466	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.742	80.87	3	0.00014034	69953	160511_QHF_FH_JSI12i_2	66.644	58.254			1.1383	1.19	31.005	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9456	0.95573	NaN	1	0	Median	1.3702	1.4817	NaN	1	0	Median	104540000	51849000	52692000	0	0	0	0	0	0	79829000	41322000	38506000	24711000	10526000	14185000	6380	1372	6017	39941;39942	54518;54519	54518			0	
CEMEQQNQEYK	1	Unmodified	1485.5864	0.58642832	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q61782	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.845	13.579	2	4.0447E-07	11335	160511_QHF_FH_JSI12i_1	117.67	111.64		+	1.2485	1.2924	53.468	3	2	Median	NaN	NaN	NaN	0	0	Median	0.78288	0.87511	NaN	1	1	Median	2.6185	2.519	NaN	1	1	Median	1.2485	1.2924	NaN	1	0	Median	122880000	48120000	74762000	0	0	0	33156000	23924000	9232300	48350000	9521700	38829000	41376000	14675000	26702000	6381	65	6018	39943;39944;39945	54520;54521;54522	54521			3	
CENFTTCWR	0	Unmodified	1272.5016	0.50157648	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0				By MS/MS	14.5	0.5							1	1					2	52.548	42.037	2	0.012512	21756	160513_QHF_FH_JSI12Kac_5	55.064	41.485			1.4527	1.5635	52.046	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4527	1.5635	52.046	2	0	Median	6018700	2477500	3541200	0	0	0	0	0	0	0	0	0	6018700	2477500	3541200	6382	2199	6019	39946;39947	54523;54524;54525	54525			3	
CESAFLSK	1	Unmodified	940.43242	0.43241751	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6	5.66		2					1			1		1	1	30.479	26.584	2	0.007143	22289	160511_QHF_FH_JSI12i_2	69.825	44.826			0.39849	0.39713	38.413	3	3	Median	0.80118	0.6819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39849	0.39713	NaN	1	1	Median	0.28144	0.32436	NaN	1	1	Median	147510000	74138000	73370000	84824000	28268000	56556000	0	0	0	8301200	4808000	3493200	54382000	41062000	13320000	6383	2120	6020	39948;39949;39950	54526;54527;54528	54526			3	
CESAFLSKR	1	Acetyl (K)	1138.5441	0.54409322	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		47.467	37.032	2	0.024576	20681	160513_QHF_FH_JSI11Kac_5	64.04	48.378			0.17124	0.16872	56.574	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17124	0.16872	56.574	2	2	Median	NaN	NaN	NaN	0	0	Median	10598000	8181300	2416400	0	0	0	0	0	0	10598000	8181300	2416400	0	0	0	6384	2120	6021	39951;39952	54529;54530	54530	2219		2	
CESAPGCGVWQRPVIDNPNYK	1	Unmodified	2446.1158	0.11579817	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	55.794	54.997	3	9.4214E-18	48733	160511_QHF_FH_JSI11i_3	143.46	135.27			0.95565	0.9727	15.027	4	0	Median	0.9968	0.84167	NaN	1	0	Median	0.91619	1.1506	NaN	1	0	Median	0.99035	0.9727	13.682	2	0	Median	NaN	NaN	NaN	0	0	Median	282120000	138510000	143610000	53053000	27557000	25497000	113210000	61306000	51902000	115860000	49644000	66215000	0	0	0	6385	1299	6022	39953;39954;39955;39956;39957;39958	54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543	54531			13	
CFFIAQSYVLVK	1	Unmodified	1473.769	0.76900778	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									6	2		2	2	86.095	76.868	2	2.1494E-09	42357	160513_QHF_FH_JSI9Kac_6	117.52	82.632			0.87548	0.91225	72.307	5	5	Median	2.7866	2.4294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71142	0.66821	87.459	2	2	Median	0.71055	0.74055	29.49	2	2	Median	217610000	111190000	106420000	35408000	8833100	26575000	0	0	0	110340000	65313000	45023000	71866000	37047000	34819000	6386	5295	6023	39959;39960;39961;39962;39963;39964	54544;54545;54546;54547;54548;54549	54547			6	
CFGEQNK	1	Unmodified	881.37015	0.3701516	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	8.4502	8.0176	2	0.013335	5686	160511_QHF_FH_JSI11i_2	70.716	58.811			0.48285	0.49759	0.70518	3	3	Median	0.56999	0.49992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48285	0.49759	NaN	1	1	Median	0.4473	0.49304	NaN	1	1	Median	168600000	106410000	62194000	18261000	11380000	6881700	0	0	0	90848000	59202000	31646000	59496000	35829000	23667000	6387	2362	6024	39965;39966;39967	54550;54551;54552	54552			3	
CFGFVTYSNVEEADAAMAASPHAVDGNTVELK	1	Unmodified	3399.5388	0.53875643	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	1	3	92.189	91.712	3	1.5556E-23	80551	160511_QHF_FH_JSI11i_2	110.08	107.85			0.84591	0.8465	45.028	7	5	Median	1.0107	0.88633	NaN	1	0	Median	0.93234	1.1469	60.154	2	2	Median	0.84591	0.8465	NaN	1	0	Median	0.42137	0.45306	58.097	3	3	Plateau	206410000	108920000	97485000	17816000	7522100	10294000	62533000	30342000	32192000	67674000	33015000	34659000	58383000	38042000	20340000	6388	2361	6025	39968;39969;39970;39971;39972;39973;39974	54553;54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565	54560			13	
CFGTGAAGNR	0	Unmodified	1009.44	0.4399625	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	12.032	11.749	2	1.7528E-05	9011	160511_QHF_FH_JSI12i_3	110.81	93.881			1.0332	1.035	24.38	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0332	1.035	NaN	1	0	Median	0.9286	0.97686	34.154	2	1	Median	218700000	106750000	111950000	0	0	0	0	0	0	107300000	52777000	54526000	111400000	53972000	57427000	6389	2094	6026	39975;39976;39977	54566;54567;54568	54568			2	
CFIEEIPDETMVIGNYR	0	Unmodified	2084.9547	0.95471265	3296;4475	Q7Z7H5;Q9BVK6	TMED4;TMED9	Transmembrane emp24 domain-containing protein 4;Transmembrane emp24 domain-containing protein 9	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		4										3	1	93.979	93.492	2	9.3865E-06	80622	160511_QHF_FH_JSI12i_2	121.08	116.19			1.1697	1.3103	24.954	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.093	32.036	2	1	Median	1.1697	1.3103	NaN	1	0	Median	30154000	12577000	17577000	0	0	0	0	0	0	18600000	7612600	10988000	11554000	4964400	6589100	6390	3296;4475	6027	39978;39979;39980;39981	54569;54570;54571;54572;54573	54571			5	
CFIVGADNVGSK	1	Unmodified	1265.6074	0.60742176	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.32	3	8	2				1	1		3	4	5	3	47.855	45.523	2	2.8586E-05	41167	160511_QHF_FH_JSI10i_1	107.83	86.929			1.3189	1.2269	67.238	14	12	Median	1.4134	1.1785	50.46	3	3	Median	1.3041	1.5952	95.108	3	2	Median	0.67758	0.6649	67.29	5	4	Median	1.6078	1.6879	41.996	3	3	Median	2821900000	1269400000	1552500000	276820000	129760000	147060000	626130000	294640000	331490000	957100000	513650000	443450000	961820000	331310000	630520000	6391	837	6028	39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992;39993;39994;39995;39996	54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591;54592	54581			19	
CFLSWLVK	1	Unmodified	1051.5525	0.55247306	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	91.853	91.576	2	0.0023284	79221	160511_QHF_FH_JSI12i_3	89.55	71.514			0.33887	0.39336	197.24	3	3	Median	NaN	NaN	NaN	0	0	Median	0.33887	0.39336	NaN	1	1	Median	0.19318	0.17885	NaN	1	1	Median	7.3764	7.5409	NaN	1	1	Median	58202000	36667000	21535000	0	0	0	12434000	7715100	4719100	13963000	12699000	1264400	31805000	16253000	15552000	6392	3904	6029	39997;39998;39999;40000	54593;54594;54595;54596	54595			4	
CFNTLTNSFQPSLLGR	0	Unmodified	1853.9094	0.90941744	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		85.74	85.157	2	1.0382E-27	75704	160511_QHF_FH_JSI10i_2	149.26	113.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6393	1857	6030	40001;40002	54597;54598	54598			2	
CFSEENHEPLR	0	Unmodified	1416.6092	0.60921267	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	23.005	22.233	2;3	0.0016767	18399	160511_QHF_FH_JSI12i_2	51.359	47.714			1.2006	1.3648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2006	1.3648	NaN	1	0	Median	61914000	34643000	27272000	0	0	0	0	0	0	10486000	10486000	0	51428000	24156000	27272000	6394	4212	6031	40003;40004	54599;54600	54599			2	
CFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR	0	Unmodified	3396.6045	0.60446823	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	86.87	86.13	3	2.571E-11	74445	160511_QHF_FH_JSI12i_2	66.027	60.367			1.1923	1.1494	31.456	2	0	Median	1.0614	0.92015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3394	1.4357	NaN	1	0	Median	40463000	18253000	22210000	14490000	6289200	8200900	0	0	0	0	0	0	25973000	11964000	14009000	6395	472	6032	40005;40006	54601;54602;54603	54602			3	
CFSVLGFCK	1	Unmodified	1116.5096	0.50962197	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		76.736	67.411	2	0.00019176	36780	160513_QHF_FH_JSI11Kac_6	103.83	76.308			0.69894	0.67968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69894	0.67968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21516000	13118000	8398700	0	0	0	0	0	0	21516000	13118000	8398700	0	0	0	6396	1024	6033	40007	54604	54604			1	
CFTFTASFNRPNLYYEVR	0	Unmodified	2284.0735	0.073522654	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	81.198	73.482	2;3	1.0191E-43	41080	160513_QHF_FH_JSI10Kac_6	180.14	165.88			1.0092	1.1042	13.016	5	2	Median	1.0092	0.84571	NaN	1	0	Median	0.92498	1.098	0.80309	2	0	Median	1.1738	1.1671	NaN	1	1	Median	1.0782	1.1375	NaN	1	1	Median	770980000	381200000	389780000	202460000	83455000	119010000	499100000	264600000	234500000	37718000	18809000	18910000	31702000	14332000	17370000	6397	1579	6034	40008;40009;40010;40011;40012	54605;54606;54607;54608;54609;54610	54608			6	
CGAALAGHQLIR	0	Unmodified	1265.6663	0.66627404	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	32.276	31.805	2;3	2.6652E-05	26944	160511_QHF_FH_JSI11i_2	114.89	87.123			0.40493	0.40775	50.522	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28396	0.28527	NaN	1	1	Median	0.57744	0.58283	NaN	1	1	Median	69354000	56862000	12492000	0	0	0	14523000	14523000	0	28553000	23340000	5213100	26279000	19000000	7279100	6398	2094	6035	40013;40014;40015	54611;54612;54613	54611			3	
CGAIAEQTPILLLFLLR	0	Unmodified	1927.0965	0.096489928	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	2	3	3	2	100.91	93.584	2;3	4.7099E-266	52494	160513_QHF_FH_JSI11Kac_6	343.65	318.17			1.2155	1.2259	14.412	9	3	Median	1.3326	1.1319	11.289	2	0	Median	0.9561	1.1374	20.914	3	2	Plateau	1.3258	1.2622	2.6095	2	0	Median	0.97472	1.0397	1.9754	2	1	Median	2907100000	1447300000	1459800000	243880000	83223000	160660000	1461600000	812040000	649610000	982940000	410100000	572840000	218650000	141970000	76675000	6399	1544	6036	40016;40017;40018;40019;40020;40021;40022;40023;40024;40025	54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628	54616			15	
CGDLVFAK	1	Unmodified	908.44259	0.44258826	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	2	3	3	39.223	38.601	2	0.0025803	33054	160511_QHF_FH_JSI11i_2	86.953	75.049			0.57495	0.48635	86.984	9	9	Median	0.57495	0.48635	NaN	1	1	Median	0.61694	0.7237	113.12	2	2	Median	1.5818	1.5668	121.15	3	3	Median	0.31343	0.32487	85.419	3	3	Plateau	1310600000	780490000	530110000	32674000	16716000	15959000	306480000	203970000	102520000	562690000	292960000	269730000	408760000	266860000	141910000	6400	1758	6037	40026;40027;40028;40029;40030;40031;40032;40033;40034	54629;54630;54631;54632;54633;54634;54635;54636;54637	54637			9	
CGDLVFAKMK	2	Acetyl (K)	1209.5886	0.58860057	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.346	62.616	2	0.0027063	33418	160513_QHF_FH_JSI11Kac_5	80.239	67.186			0.068592	0.068013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.068592	0.068013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4448700	4188200	260500	0	0	0	0	0	0	4448700	4188200	260500	0	0	0	6401	1758	6038	40035	54638	54638	1772		1	
CGEDDETIPSEYR	0	Unmodified	1569.6253	0.62531625	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.747	33.359	2	6.4647E-06	29879	160511_QHF_FH_JSI11i_1	128.01	121.16			1.4609	1.5821	40.668	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.6095	1.8018	NaN	1	0	Median	0.83186	0.80854	NaN	1	1	Median	1.0731	1.0697	NaN	1	0	Median	54355000	26141000	28214000	0	0	0	20281000	7642300	12639000	17735000	9581500	8153000	16340000	8917100	7422400	6402	1181	6039	40036;40037;40038	54639;54640;54641;54642;54643;54644	54639			6	
CGEEIAVQFVDMVK	1	Unmodified	1623.7637	0.7636644	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								1	4	4	3	95.27	94.996	2	3.4369E-06	86462	160511_QHF_FH_JSI11i_1	132.32	125.35			0.9889	1.0136	78.679	12	9	Median	0.487	0.41176	NaN	1	0	Median	0.9036	1.0827	68.517	4	3	Median	1.039	1.0611	85.472	4	4	Median	1.644	1.6254	106.97	3	2	Median	226530000	108810000	117720000	7563100	5163500	2399600	79350000	37452000	41898000	92896000	44563000	48333000	46719000	21634000	25085000	6403	309	6040	40039;40040;40041;40042;40043;40044;40045;40046;40047;40048;40049;40050	54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659	54648			15	
CGEMAQAASAAVTR	0	Unmodified	1421.6391	0.63913259	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	3	1	34.117	33.722	2	6.1602E-10	28520	160511_QHF_FH_JSI11i_2	108.72	92.176			0.1166	0.13004	17.396	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.12564	0.15022	NaN	1	1	Median	0.1151	0.11257	NaN	1	1	Median	0.14511	0.15388	NaN	1	1	Median	165870000	155150000	10719000	0	0	0	54052000	48902000	5150800	71212000	67414000	3798500	40607000	38837000	1769300	6404	1283	6041	40051;40052;40053;40054;40055;40056	54660;54661;54662;54663;54664;54665	54665			6	
CGFLPGNEK	1	Unmodified	1020.4699	0.46986564	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		32.091	31.702	2	0.018701	26967	160511_QHF_FH_JSI11i_2	51.346	29.215			0.45691	0.46493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45691	0.46493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62760000	48046000	14715000	0	0	0	0	0	0	62760000	48046000	14715000	0	0	0	6405	5391	6042	40057	54666	54666			1	
CGIFAYLNYHVPR	0	Unmodified	1608.7871	0.78711746	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.421	73.78	3	0.020563	40339	160513_QHF_FH_JSI10Kac_6	49.448	44.465			0.83846	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83846	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154880000	67793000	87085000	0	0	0	154880000	67793000	87085000	0	0	0	0	0	0	6406	2242	6043	40058	54667	54667			0	
CGLQFLGNIASR	0	Unmodified	1334.6765	0.67650438	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.317	72.691	2	0.031016	63800	160511_QHF_FH_JSI11i_2	47.559	35.032			0.47761	0.47329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47761	0.47329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46611000	27378000	19232000	0	0	0	0	0	0	46611000	27378000	19232000	0	0	0	6407	5227	6044	40059	54668	54668			1	
CGLVLSWK	1	Unmodified	961.50552	0.50552287	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.496	63.193	2	0.021774	54320	160511_QHF_FH_JSI12i_2	45.081	34.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6408	1679	6045	40060	54669	54669			1	
CGNCGPGYSTPLEAMK	1	Unmodified	1740.727	0.72696132	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	51.172	50.757	2	0.00024983	46244	160511_QHF_FH_JSI12i_1	72.089	65.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5009700	5009700	0	0	0	0	5009700	5009700	0	0	0	0	0	0	0	6409	2374	6046	40061;40062	54670;54671	54670			2	
CGNQAAIMELDDTLK	1	Unmodified	1677.7702	0.77020634	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	69.51	69.096	2;3	4.0465E-11	62860	160511_QHF_FH_JSI11i_1	155.02	131.79			1.0763	1.1166	24.56	6	1	Median	NaN	NaN	NaN	0	0	Median	0.86571	0.99675	39.553	2	0	Median	1.0457	1.0119	17.738	2	0	Median	1.2109	1.2612	21.035	2	1	Median	303460000	133570000	169890000	0	0	0	97408000	44809000	52600000	127160000	57277000	69878000	78898000	31487000	47411000	6410	2014;2065	6047	40063;40064;40065;40066;40067;40068	54672;54673;54674;54675;54676	54673			4	
CGNVVYISIPHYK	1	Unmodified	1548.7759	0.77588407	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		69.514	60.001	3	0.0052415	32534	160513_QHF_FH_JSI11Kac_6	50.897	38.336			1.7714	1.6931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7714	1.6931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18426000	6260600	12165000	0	0	0	0	0	0	18426000	6260600	12165000	0	0	0	6411	2831	6048	40069	54677	54677			1	
CGSVLVR	0	Unmodified	789.41671	0.41670786	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		22.362	12.932	2	0.043706	9208	160513_QHF_FH_JSI11Kac_5	64.236	43.681			1.8011	1.7584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8011	1.7584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12020000	5791200	6229100	0	0	0	0	0	0	12020000	5791200	6229100	0	0	0	6412	1084	6049	40070	54678	54678			1	
CGVISPR	0	Unmodified	787.40106	0.4010578	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		19.393	9.9624	2	0.0095099	7922	160513_QHF_FH_JSI11Kac_5	88.029	62.202			1.2376	1.2084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2376	1.2084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11970000	5472200	6497400	0	0	0	0	0	0	11970000	5472200	6497400	0	0	0	6413	1986	6050	40071	54679	54679			1	
CGWLDLVLLK	1	Unmodified	1215.6686	0.66856545	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.98	101.87	2	0.0011847	89640	160511_QHF_FH_JSI11i_2	78.113	62.231			1.4246	1.4589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4246	1.4589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90291000	30085000	60206000	0	0	0	0	0	0	90291000	30085000	60206000	0	0	0	6414	1356	6051	40072	54680	54680			1	
CHTPPLYR	0	Unmodified	1042.5018	0.50183447	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		4								1		2	1	16.562	15.988	3	0.03664	12847	160511_QHF_FH_JSI11i_2	46.994	30.84			0.96953	0.92778	50.512	4	0	Median	0.90186	0.79506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6404	0.65568	70.922	2	0	Median	1.1089	1.2277	NaN	1	0	Median	286390000	145210000	141180000	36749000	16101000	20649000	0	0	0	175320000	99013000	76310000	74321000	30096000	44226000	6415	2190	6052	40073;40074;40075;40076	54681;54682	54682			0	
CIALAQLLVEQNFPAIAIHR	0	Unmodified	2276.2463	0.24634206	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									7		2	2	3	96.274	87.907	3;4	3.5282E-44	52162	160513_QHF_FH_JSI10Kac_6	231.91	190.22			0.30218	0.28476	206.38	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0786	1.2562	265.52	2	2	Median	0.30218	0.28476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	848130000	328640000	519490000	0	0	0	354700000	164430000	190270000	253970000	132970000	121000000	239460000	31244000	208220000	6416	2474	6053	40077;40078;40079;40080;40081;40082;40083	54683;54684;54685;54686;54687;54688;54689	54689			7	
CIAVGESDGSIWNPDGIDPK	1	Unmodified	2128.9735	0.97353384	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	77.901	77.47	2	4.6269E-08	70477	160511_QHF_FH_JSI11i_1	104.87	97.501			1.1717	1.1924	1.4706	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2178	1.1801	NaN	1	0	Median	1.1274	1.2049	NaN	1	1	Median	57782000	27913000	29868000	0	0	0	0	0	0	35067000	16149000	18917000	22715000	11764000	10951000	6417	762	6054	40084;40085;40086	54690;54691;54692;54693;54694	54692			5	
CIAVHPTQPFILTSSDDMLIK	1	Unmodified	2385.2072	0.20723894	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		91.32	90.844	3	1.7963E-05	79868	160511_QHF_FH_JSI11i_2	67.866	59.476			1.1746	1.2979	21.618	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2415	1.5123	NaN	1	1	Median	1.1113	1.1139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96922000	52474000	44448000	0	0	0	35730000	21736000	13994000	61193000	30738000	30455000	0	0	0	6418	1438	6055	40087;40088	54695;54696	54695			2	
CIDSGLWVPNSK	1	Unmodified	1374.6602	0.66018561	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	59.794	59.099	2	3.2645E-05	52228	160511_QHF_FH_JSI10i_2	113.63	79.543			0.36815	0.333	29.396	4	3	Median	0.42214	0.36084	NaN	1	1	Median	0.43499	0.51918	NaN	1	1	Median	0.28868	0.28325	11.528	2	1	Median	NaN	NaN	NaN	0	0	Median	303040000	236580000	66460000	59830000	43876000	15954000	64003000	46748000	17255000	179200000	145950000	33251000	0	0	0	6419	2738	6056	40089;40090;40091;40092;40093	54697;54698;54699;54700;54701	54701			5	
CIESLIAVFQK	1	Unmodified	1306.6955	0.69550848	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.93		12	2						14	6	6	9	7	94.043	89.591	2;3	1.4049E-52	47104	160513_QHF_FH_JSI10Kac_6	230.1	189.08			0.1509	0.13512	237.03	12	12	Median	0.1732	0.14905	0.33019	2	2	Median	0.030611	0.036903	58.803	3	3	Plateau	0.20432	0.19254	282.06	4	4	Median	3.5886	3.769	342.54	3	3	Plateau	3034300000	2060300000	973970000	372250000	283520000	88732000	659590000	565810000	93780000	1291100000	807340000	483750000	711370000	403660000	307710000	6420	1387	6057	40094;40095;40096;40097;40098;40099;40100;40101;40102;40103;40104;40105;40106;40107;40108;40109;40110;40111;40112;40113;40114;40115;40116;40117;40118;40119;40120;40121	54702;54703;54704;54705;54706;54707;54708;54709;54710;54711;54712;54713;54714;54715;54716;54717;54718;54719;54720;54721;54722;54723;54724;54725;54726;54727;54728;54729;54730;54731;54732;54733;54734;54735	54735			34	
CIFLLFINHR	0	Unmodified	1331.7172	0.71724698	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		1		2	86.767	78.583	3	1.0205E-19	44574	160513_QHF_FH_JSI10Kac_6	164.57	139.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67248000	11743000	55505000	0	0	0	43219000	0	43219000	0	0	0	24029000	11743000	12286000	6421	1499	6058	40122;40123;40124	54736;54737;54738	54738			3	
CIGGVIFFHETLYQK	1	Unmodified	1810.9076	0.90762652	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.994	72.861	3	3.6007E-07	40720	160513_QHF_FH_JSI10Kac_6	154.47	131.33			33.249	36.059	28.763	3	3	Median	NaN	NaN	NaN	0	0	Median	33.249	39.73	NaN	1	1	Median	24.488	23.163	NaN	1	1	Median	34.299	36.059	NaN	1	1	Median	1069800000	75030000	994760000	0	0	0	649470000	33981000	615490000	224950000	24356000	200590000	195380000	16693000	178680000	6422	944	6059	40125;40126;40127	54739;54740;54741	54741			3	
CIGKPGGSLDNSEQK	2	Unmodified	1588.7515	0.75151981	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	3	3	17.939	17.833	2;3	3.9073E-05	14296	160511_QHF_FH_JSI12i_3	111.07	101.79			0.49856	2.8177	106.41	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.46077	0.56203	NaN	1	1	Median	0.49856	0.47254	NaN	1	1	Median	3.2097	3.2347	NaN	1	1	Median	181910000	53707000	128200000	0	0	0	37942000	9829400	28112000	37942000	16604000	21339000	106020000	27274000	78750000	6423	5668	6060	40128;40129;40130;40131;40132;40133;40134	54742;54743;54744;54745;54746;54747;54748;54749	54746			8	
CIIPNHEK	1	Unmodified	1009.5015	0.50150012	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	0	0	0	0			By MS/MS		2	0		1										1		14.274	14.051	2	0.019228	11111	160511_QHF_FH_JSI11i_2	57.281	27.905			0.36174	0.35734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36174	0.35734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33092000	24369000	8723100	0	0	0	0	0	0	33092000	24369000	8723100	0	0	0	6424	1436;1437;1445	6061	40135	54750	54750			1	
CIIVMPEK	1	Unmodified	988.50856	0.50855934	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0				By MS/MS	2	0		1											1	50.012	48.614	2	0.010658	41534	160511_QHF_FH_JSI12i_2	63.48	26.459			0.97451	1.0423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97451	1.0423	NaN	1	1	Median	23088000	11354000	11734000	0	0	0	0	0	0	0	0	0	23088000	11354000	11734000	6425	957	6062	40136	54751	54751			1	
CILPFDK	1	Unmodified	891.45242	0.45242467	4606	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.554	56.048	2	0.014438	48502	160511_QHF_FH_JSI11i_2	66.682	34.568			0.89087	0.90239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89087	0.90239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	177010000	98991000	78014000	0	0	0	0	0	0	177010000	98991000	78014000	0	0	0	6426	4606	6063	40137	54752	54752			1	
CILQDGR	0	Unmodified	860.41744	0.41743614	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		16.422	16.234	2	0.0055967	13151	160511_QHF_FH_JSI11i_2	94.262	44.142			1.0353	1.0176	27.826	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0353	1.0176	27.826	2	0	Median	NaN	NaN	NaN	0	0	Median	281450000	133020000	148430000	0	0	0	0	0	0	281450000	133020000	148430000	0	0	0	6427	1059	6064	40138;40139	54753;54754;54755	54755			3	
CILTTVDPDTGVMSR	0	Unmodified	1663.7909	0.79094179	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	65.227	64.69	2	0.013086	58801	160511_QHF_FH_JSI11i_1	69.451	53.197			0.48867	0.49506	9.5847	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48039	0.46262	NaN	1	1	Median	0.49708	0.52977	NaN	1	1	Median	43231000	28372000	14858000	0	0	0	0	0	0	19917000	14648000	5269700	23313000	13725000	9588500	6428	2985	6065	40140;40141	54756;54757	54756			2	
CILVITWIQHLIPK	1	Unmodified	1733.0062	0.0062183574	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	1	4	2	99.801	92.586	2;3	1.7126E-106	51315	160513_QHF_FH_JSI11Kac_6	252.99	231.9			0.0089702	0.00898	155.7	6	6	Plateau	0.088566	0.07591	272.93	2	2	Median	0.0070079	0.0083099	NaN	1	1	Median	0.014181	0.013454	46.204	2	2	Median	0.026203	0.027643	NaN	1	1	Median	3180300000	3141200000	39045000	544740000	536170000	8566800	774670000	771490000	3178000	1603800000	1588300000	15514000	257060000	245270000	11787000	6429	5391	6066	40142;40143;40144;40145;40146;40147;40148;40149;40150;40151	54758;54759;54760;54761;54762;54763;54764;54765;54766;54767	54761			10	
CIMFLEGHLK	1	Unmodified	1246.6202	0.62023505	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	65.787	64.951	3	0.00075174	55737	160511_QHF_FH_JSI12i_2	61.56	55.718			2.6125	3.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6125	3.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14879000	7261900	7617300	0	0	0	14879000	7261900	7617300	0	0	0	0	0	0	6430	308	6067	40152;40153	54768;54769	54768			2	
CIPALDSLTPANEDQK	1	Unmodified	1770.8458	0.84581413	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	69.133	68.569	2	1.7905E-116	62268	160511_QHF_FH_JSI11i_1	273.44	246.76			1.0534	0.97087	20.111	4	0	Median	1.1974	0.97684	NaN	1	0	Median	0.83178	0.96494	NaN	1	0	Median	0.92672	0.91064	NaN	1	0	Median	1.3449	1.4143	NaN	1	0	Median	823370000	379850000	443520000	125970000	54740000	71226000	207900000	106790000	101120000	243440000	125850000	117590000	246060000	92478000	153590000	6431	980	6068	40154;40155;40156;40157;40158	54770;54771;54772;54773;54774;54775;54776;54777;54778;54779;54780;54781;54782;54783;54784;54785	54771			16	
CIQMWFDPAQGNPNEEVAR	0	Unmodified	2260.9994	0.99937143	1074	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	82.969	82.196	2	1.8535E-23	70869	160511_QHF_FH_JSI12i_2	133.71	125.41			0.5786	0.58532	7.8086	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63498	0.61855	NaN	1	1	Median	0.52722	0.55388	NaN	1	1	Median	34762000	21533000	13229000	0	0	0	0	0	0	20877000	10066000	10811000	13885000	11467000	2418300	6432	1074	6069	40159;40160;40161;40162;40163;40164	54786;54787;54788;54789;54790;54791	54787			6	
CISEVQANNVVLGQYVGNPDGEGEATK	1	Unmodified	2847.3345	0.33450096	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	72.424	71.962	3	2.9609E-16	65530	160511_QHF_FH_JSI12i_1	113.13	102.99			1.5006	1.4978	35.813	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1976	1.1627	NaN	1	0	Median	1.8803	1.9295	NaN	1	1	Median	136660000	65066000	71591000	0	0	0	0	0	0	89272000	49887000	39385000	47385000	15179000	32207000	6433	1000	6070	40165;40166	54792;54793;54794;54795	54795			4	
CIYCIHALSLYLFK	1	Unmodified	1799.9103	0.91026906	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	2	4	3	90.104	81.506	2;3	9.658E-57	45118	160513_QHF_FH_JSI9Kac_6	237.36	203.95			1.3381	1.334	258.05	8	7	Median	5.6928	4.824	318.74	2	1	Median	8.0056	9.5502	141.41	2	2	Median	0.21149	0.19909	3.9935	2	2	Median	1.1432	1.1986	411.28	2	2	Median	2622300000	835270000	1787000000	455810000	77104000	378700000	418480000	39149000	379330000	1322000000	407010000	914970000	426050000	312010000	114040000	6434	1600	6071	40167;40168;40169;40170;40171;40172;40173;40174;40175;40176;40177;40178	54796;54797;54798;54799;54800;54801;54802;54803;54804;54805;54806;54807	54802			12	
CIYNLLQSSSPAVK	1	Unmodified	1578.8076	0.80757813	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	70.386	69.435	2	8.4284E-13	61534	160511_QHF_FH_JSI10i_2	121.08	95.69			0.49999	0.53127	49.67	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75912	0.75483	NaN	1	1	Median	0.32932	0.37392	NaN	1	1	Median	91594000	37514000	54080000	0	0	0	0	0	0	66597000	29762000	36835000	24996000	7751500	17245000	6435	1804	6072	40179;40180;40181;40182;40183	54808;54809;54810;54811;54812	54812			5	
CKDDEFTHLYTLIVRPDNTYEVK	2	Unmodified	2855.38	0.37999459	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	84.033	81.17	4;5	5.6466E-13	41677	160513_QHF_FH_JSI10Kac_6	104.67	104.61			1.1068	1.2032	32.964	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81524	0.95301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5027	1.519	NaN	1	0	Median	172990000	75710000	97280000	0	0	0	87560000	46518000	41043000	0	0	0	85430000	29193000	56237000	6436	1297	6073	40184;40185	54813;54814;54815	54815			3	
CLAALASLR	0	Unmodified	973.53789	0.53788563	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.59	60.315	2	0.018701	51933	160511_QHF_FH_JSI12i_3	51.346	26.423			1.4907	1.4	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4907	1.4	NaN	1	1	Median	32172000	11213000	20959000	0	0	0	0	0	0	0	0	0	32172000	11213000	20959000	6437	2325	6074	40186	54816	54816			1	
CLAENSLGSAR	0	Unmodified	1176.5557	0.55572054	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.188	23.929	2	0.0018339	19953	160511_QHF_FH_JSI12i_2	65.347	33.975			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6438	1388	6075	40187	54817	54817			1	
CLAFHDISPQAPTHFLVIPK	1	Unmodified	2290.1932	0.19324386	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									3	1	86.496	86.106	3;4	2.5854E-11	76013	160511_QHF_FH_JSI11i_2	123.55	115.05			0.79366	0.78281	32.225	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68694	0.62776	31.853	3	2	Median	0.91696	1.0031	NaN	1	0	Median	353180000	199250000	153930000	0	0	0	0	0	0	295160000	173150000	122010000	58026000	26102000	31923000	6439	1683	6076	40188;40189;40190;40191	54818;54819;54820;54821;54822;54823	54822			6	
CLAIHPDMVTIATGQVAGTTK	1	Unmodified	2183.1079	0.10785925	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	75.248	74.272	3	1.5572E-05	64158	160511_QHF_FH_JSI12i_2	74.364	65.87			1.3467	1.4872	54.519	4	4	Median	NaN	NaN	NaN	0	0	Median	1.056	1.2979	NaN	1	1	Median	1.7174	1.704	NaN	1	1	Median	1.4225	1.5177	92.424	2	2	Median	70436000	33199000	37237000	0	0	0	14523000	6556500	7966500	29330000	11687000	17643000	26583000	14955000	11628000	6440	737	6077	40192;40193;40194;40195	54824;54825;54826;54827;54828	54824			5	
CLAPMMSEVIR	0	Unmodified	1305.6243	0.62433415	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.676	71.057	2	0.04434	62333	160511_QHF_FH_JSI11i_2	56.916	36.216			3.4081	3.3513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4081	3.3513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55706000	16999000	38707000	0	0	0	0	0	0	55706000	16999000	38707000	0	0	0	6441	1507	6078	40196	54829	54829			1	
CLATGPGIASTVK	1	Unmodified	1273.67	0.67002202	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.054	41.673	2	0.0011445	35635	160511_QHF_FH_JSI12i_2	76.143	52.714			1.692	1.841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.692	1.841	NaN	1	1	Median	39388000	18087000	21301000	0	0	0	0	0	0	0	0	0	39388000	18087000	21301000	6442	512	6079	40197	54830	54830			1	
CLATHGR	0	Unmodified	813.39156	0.39155574	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	4.2907	4.1847	2	0.0075516	2131	160511_QHF_FH_JSI11i_3	88.643	65.119			0.54259	0.63515	76.915	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57829	0.72114	NaN	1	0	Median	0.23988	0.22051	NaN	1	1	Median	0.16509	0.17051	NaN	1	1	Median	300790000	200240000	100550000	0	0	0	172730000	100180000	72550000	90789000	68842000	21947000	37269000	31213000	6056000	6443	1650	6080	40198;40199;40200	54831;54832;54833	54831			3	
CLDEFPNLK	1	Unmodified	1134.5379	0.53794521	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.299	57.966	2	0.00097524	49779	160511_QHF_FH_JSI12i_2	82.452	42.184			1.1946	1.351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1946	1.351	NaN	1	1	Median	91884000	40155000	51729000	0	0	0	0	0	0	0	0	0	91884000	40155000	51729000	6444	1188	6081	40201	54834	54834			1	
CLDENLEDASQCK	1	Unmodified	1580.6447	0.64467148	2905	Q5JTJ3	COA6	Cytochrome c oxidase assembly factor 6 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.464	36.198	2	2.1261E-12	32549	160511_QHF_FH_JSI11i_1	122.51	108.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6445	2905	6082	40202	54835	54835			1	
CLEELQK	1	Unmodified	918.44807	0.44806757	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	24.643	24.307	2	0.0059185	21515	160511_QHF_FH_JSI12i_1	95.62	23.387			1.4577	1.4601	90.33	4	4	Median	NaN	NaN	NaN	0	0	Median	0.27226	0.32245	NaN	1	1	Median	1.4577	1.4601	50.218	2	2	Median	2.1872	2.279	NaN	1	1	Median	390470000	192470000	198000000	0	0	0	95592000	75166000	20426000	184700000	77338000	107360000	110180000	39967000	70213000	6446	1673	6083	40203;40204;40205;40206	54836;54837;54838;54839	54837			4	
CLEHLFFFK	1	Unmodified	1239.6111	0.61105057	1310	P28702	RXRB	Retinoic acid receptor RXR-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	5.3	1	4							1	1	3	1	1	103.85	102.83	2;3	0.035749	94952	160511_QHF_FH_JSI10i_1	47.067	26.738			93.839	93.9	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93.839	93.9	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	409850000	194310	409650000	11832000	0	11832000	292200000	0	292200000	56737000	194310	56543000	49076000	0	49076000	6447	1310	6084	40207;40208;40209;40210;40211;40212	54840;54841;54842;54843;54844;54845	54841			6	
CLELFSELAEDK	1	Unmodified	1452.6806	0.68064628	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.96	3.76	6	13	2					2		3	6	8	6	90.77	89.3	2	4.2472E-34	78081	160511_QHF_FH_JSI12i_2	244.24	233.09			1.2233	1.2169	233.04	19	19	Median	0.23798	0.20348	244.04	3	3	Median	3.8858	4.6483	221.7	6	6	Median	1.2233	1.2169	270.67	5	5	Median	0.73837	0.77567	254.87	5	5	Median	2758400000	1425400000	1333000000	270130000	140080000	130050000	770020000	358300000	411720000	1020800000	605300000	415470000	697500000	321720000	375790000	6448	898	6085	40213;40214;40215;40216;40217;40218;40219;40220;40221;40222;40223;40224;40225;40226;40227;40228;40229;40230;40231;40232;40233;40234;40235	54846;54847;54848;54849;54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869;54870;54871;54872;54873;54874;54875;54876;54877;54878	54852			33	
CLELFTELAEDK	1	Unmodified	1466.6963	0.69629635	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							3	4	3	2	87.57	87.143	2;3	4.8218E-07	81883	160511_QHF_FH_JSI11i_2	180.07	143.37			1.5406	1.3805	264.27	12	11	Median	1.2353	1.01	240.25	3	2	Median	0.7243	0.85989	274.74	4	4	Median	1.9214	1.8871	364.24	3	3	Median	4.614	4.9139	326.82	2	2	Median	1286500000	524550000	761930000	298070000	135110000	162950000	329760000	140230000	189530000	489650000	229770000	259870000	169010000	19435000	149570000	6449	880	6086	40236;40237;40238;40239;40240;40241;40242;40243;40244;40245;40246;40247	54879;54880;54881;54882;54883;54884;54885;54886;54887;54888;54889;54890;54891;54892;54893;54894;54895;54896;54897;54898	54890			20	
CLFTLLGHLDYIR	0	Unmodified	1619.8494	0.84938336	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	3	1	2	92.091	85.711	2;3	2.5595E-10	45726	160513_QHF_FH_JSI9Kac_6	157.52	138.78			4.963	5.4995	222.13	6	5	Median	14.463	12.22	NaN	1	1	Median	0.34742	0.40248	253.98	3	3	Median	20.757	19.639	NaN	1	1	Median	2.6743	2.7683	NaN	1	0	Median	680700000	226430000	454270000	57194000	3116200	54078000	368340000	203380000	164960000	64343000	2895600	61447000	190820000	17036000	173780000	6450	1805	6087	40248;40249;40250;40251;40252;40253;40254	54899;54900;54901;54902;54903;54904;54905	54900			6	
CLGLTEAQTR	0	Unmodified	1147.5656	0.56555694	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.06	1	7					1	1		2	2	3	3	32.434	29.785	2	1.3302E-08	25280	160511_QHF_FH_JSI11i_2	176.6	143.05			0.53504	0.55888	112.93	10	10	Median	0.45985	0.40855	2.3908	2	2	Median	0.84381	1.0426	167.99	2	2	Median	0.53317	0.52318	160.98	3	3	Median	0.7052	0.72147	98.34	3	3	Median	885490000	436150000	449340000	49383000	33450000	15932000	154190000	71624000	82563000	253260000	134480000	118780000	428660000	196600000	232060000	6451	1372	6088	40255;40256;40257;40258;40259;40260;40261;40262;40263;40264	54906;54907;54908;54909;54910;54911;54912;54913;54914;54915;54916	54913			11	
CLIATGGTPR	0	Unmodified	1044.5386	0.53861391	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.782	27.482	2	0.00066783	23100	160511_QHF_FH_JSI12i_2	79.906	51.688			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6452	736	6089	40265	54917	54917			1	
CLIDDREMPVK	1	Unmodified	1374.6636	0.66355643	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1			By MS/MS	By matching	2	0		2										1	1	44.968	44.028	3	0.06108	37983	160511_QHF_FH_JSI11i_2	47.288	33.324			1.3069	1.3623	25.192	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.616	1.628	NaN	1	0	Median	1.0569	1.1401	NaN	1	0	Median	190020000	91094000	98924000	0	0	0	0	0	0	132960000	59796000	73161000	57061000	31298000	25763000	6453	686	6090	40266;40267	54918	54918			0	
CLKTYTGHK	2	Acetyl (K)	1148.5648	0.56482866	1971	P61964;Q86VZ2	WDR5;WDR5B	WD repeat-containing protein 5;WD repeat-containing protein 5B	yes	no	1	0	0	1				By MS/MS	16	0									1				1	24.057	16.615	3	0.0053236	9045	160513_QHF_FH_JSI12Kac_6	54.539	46.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6454	1971	6091	40268	54919	54919	1991;1992		1	
CLLDRVPEEEK	1	Unmodified	1386.6813	0.68131498	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		37.504	37.504	3	0.00064781	32850	160511_QHF_FH_JSI11i_3	62.924	50.865			1.017	0.97282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.017	0.97282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80948000	44243000	36705000	0	0	0	0	0	0	80948000	44243000	36705000	0	0	0	6455	197	6092	40269	54920;54921	54921			2	
CLMDQATDPNILGR	0	Unmodified	1602.7494	0.74941132	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	63.771	63.083	2	3.4451E-06	53992	160511_QHF_FH_JSI12i_2	131.43	124.41			0.93833	1.0371	36.732	6	4	Median	NaN	NaN	NaN	0	0	Median	0.69725	0.84993	22.686	2	2	Median	1.3933	1.38	34.939	2	0	Median	0.80415	0.85969	44.161	2	2	Median	285990000	168530000	117460000	0	0	0	64526000	39433000	25093000	110320000	55141000	55176000	111150000	73957000	37194000	6456	2094	6093	40270;40271;40272;40273;40274;40275	54922;54923;54924;54925;54926;54927;54928;54929	54924			8	
CLNNLAASQLK	1	Unmodified	1230.6391	0.63905624	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		42.75	42.276	2	2.5268E-05	36548	160511_QHF_FH_JSI11i_2	100.48	56.669			0.26734	0.26754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26734	0.26754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83280000	57542000	25738000	0	0	0	0	0	0	83280000	57542000	25738000	0	0	0	6457	2528	6094	40276;40277;40278	54930;54931;54932	54931			3	
CLPGDPNYLVGANCVSVLIDHF	0	Unmodified	2459.1614	0.16135138	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			55.406	54.497	3	0.048649	48142	160511_QHF_FH_JSI10i_2	20.439	12.447			0.78903	0.97732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78903	0.97732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28298000	19978000	8319600	0	0	0	28298000	19978000	8319600	0	0	0	0	0	0	6458	2253	6095	40279	54933;54934	54934			2	
CLQEGAEISSPAVER	0	Unmodified	1644.7777	0.77773456	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.182	41.554	2	0.00038871	37785	160511_QHF_FH_JSI12i_1	94.122	69.267			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8953800	0	8953800	0	0	0	0	0	0	0	0	0	8953800	0	8953800	6459	4348	6096	40280	54935	54935			1	
CLSSATDPQTK	1	Unmodified	1206.5551	0.55505184	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	14.814	14.184	2	1.6738E-13	11786	160511_QHF_FH_JSI12i_1	132.88	112.55			1.6546	1.6362	14.215	2	2	Median	2.1924	1.8093	NaN	1	1	Median	1.2487	1.4798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169470000	80800000	88667000	58048000	24500000	33549000	111420000	56300000	55118000	0	0	0	0	0	0	6460	636	6097	40281;40282;40283;40284	54936;54937;54938;54939	54936			4	
CLSVMEAK	1	Unmodified	936.44087	0.4408737	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		32.135	31.196	2	0.0018155	26736	160511_QHF_FH_JSI11i_2	82.279	45.258			3.4663	4.1673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.4663	4.1673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74981000	17399000	57582000	0	0	0	74981000	17399000	57582000	0	0	0	0	0	0	6461	1664	6098	40285;40286	54940;54941	54940			2	
CLTLGSLGHK	1	Unmodified	1084.5699	0.56991404	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	27.361	26.585	3	0.033393	22015	160511_QHF_FH_JSI10i_3	18.059	8.5711			1.4035	1.4231	25.643	7	0	Median	1.7691	1.4289	0	2	0	Median	0.73432	0.84378	0	2	0	Median	1.5201	1.4317	NaN	1	0	Median	1.4035	1.4231	0	2	0	Median	6375700000	2683800000	3691900000	1446800000	482640000	964190000	1887000000	974680000	912290000	888820000	374560000	514260000	2153100000	851890000	1301200000	6462	3009	6099	40287;40288;40289;40290;40291;40292;40293	54942;54943;54944	54942			3	
CLTQSGIAGGYK	1	Unmodified	1253.6074	0.60742176	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		33.342	32.943	2	0.00022123	28033	160511_QHF_FH_JSI11i_2	94.692	66.293			0.11508	0.11317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11508	0.11317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11967000	11081000	885840	0	0	0	0	0	0	11967000	11081000	885840	0	0	0	6463	1361	6100	40294;40295	54945;54946	54945			2	
CLTTDEYDGHSTYPSHQYQ	0	Unmodified	2300.928	0.92804021	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	37.474	36.581	3	0.011671	31167	160511_QHF_FH_JSI11i_2	33.836	33.836			0.96648	0.97666	18.905	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1419	1.1163	NaN	1	0	Median	0.81804	0.85445	NaN	1	1	Median	65920000	35405000	30515000	0	0	0	0	0	0	49315000	24637000	24678000	16605000	10767000	5837500	6464	1334	6101	40296;40297	54947;54948	54948			2	
CLVFSLIGLHFK	1	Unmodified	1432.7901	0.79007757	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.72			5						14	6	4	5	4	93.558	87.123	2;3	2.7848E-37	46155	160513_QHF_FH_JSI11Kac_6	206.11	175.67			0.78431	0.76388	123.85	17	14	Median	0.89647	0.75303	89.414	4	4	Median	0.36242	0.42356	141.94	4	3	Median	0.38239	0.36569	73.351	5	4	Median	2.3093	2.3918	171.74	4	3	Median	8791600000	5805900000	2985700000	1352700000	589070000	763660000	1659600000	1098100000	561440000	4320600000	3554700000	765890000	1458700000	563960000	894720000	6465	1952;3963	6102	40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313;40314;40315;40316	54949;54950;54951;54952;54953;54954;54955;54956;54957;54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968;54969;54970	54953			22	
CLVLTGFGGYDK	1	Unmodified	1328.6435	0.64347291	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		70.955	70.24	2	6.1422E-06	61418	160511_QHF_FH_JSI11i_2	119.22	100.13			3.4372	3.7597	100.88	4	4	Median	6.2205	5.4745	NaN	1	1	Median	2.2645	2.7712	NaN	1	1	Median	1.821	1.7827	148.67	2	2	Median	NaN	NaN	NaN	0	0	Median	156140000	56373000	99763000	16858000	1483000	15375000	35032000	12726000	22306000	104250000	42164000	62083000	0	0	0	6466	4279	6103	40317;40318;40319;40320	54971;54972;54973;54974	54972			4	
CLYASVLTAQPR	0	Unmodified	1377.7075	0.70747015	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.48	3	13	3			4		11	5	7	10	13	9	63.188	58.011	2;3	7.1567E-31	30721	160513_QHF_FH_JSI9Kac_6	180.67	161.89			1.133	1.1721	58.388	34	22	Median	1.3974	1.1948	60.826	6	2	Median	0.80239	0.96015	48.944	9	6	Median	0.67907	0.66728	65.457	11	10	Median	1.1438	1.258	51.824	8	4	Median	6401200000	3538900000	2862300000	417070000	196630000	220450000	1472700000	842300000	630410000	3010700000	1822000000	1188700000	1500800000	677990000	822780000	6467	1033	6104	40321;40322;40323;40324;40325;40326;40327;40328;40329;40330;40331;40332;40333;40334;40335;40336;40337;40338;40339;40340;40341;40342;40343;40344;40345;40346;40347;40348;40349;40350;40351;40352;40353;40354;40355;40356;40357;40358;40359	54975;54976;54977;54978;54979;54980;54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991;54992;54993;54994;54995;54996;54997;54998;54999;55000;55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015;55016;55017;55018;55019;55020	55015			46	
CMALAQLLVEQNFPAIAIHR	0	Unmodified	2294.2028	0.20276269	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	95.939	88.358	3	3.757E-06	51901	160513_QHF_FH_JSI10Kac_6	140.3	125.05			0.13083	0.14591	5.4478	2	2	Median	NaN	NaN	NaN	0	0	Median	0.1191	0.1404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14371	0.15164	NaN	1	1	Median	179440000	156030000	23417000	0	0	0	102130000	87361000	14767000	0	0	0	77315000	68665000	8649300	6468	97	6105	40360;40361	55021;55022	55022			2	
CMLDAALATLNTHGK	1	Unmodified	1614.7858	0.78579683	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	73.105	72.213	2;3	1.2572E-21	63269	160511_QHF_FH_JSI11i_2	141.73	128.06			0.49819	0.60756	56.995	3	2	Median	NaN	NaN	NaN	0	0	Median	0.49819	0.60756	NaN	1	1	Median	0.49566	0.50755	NaN	1	1	Median	1.3229	1.472	NaN	1	0	Median	165310000	84617000	80694000	0	0	0	43645000	27665000	15979000	57751000	34327000	23424000	63915000	22625000	41290000	6469	3860	6106	40362;40363;40364;40365	55023;55024;55025;55026	55025			4	
CMMAQYNR	0	Unmodified	1072.4252	0.42524041	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	20.112	19.247	2	8.745E-07	15793	160511_QHF_FH_JSI11i_2	151.14	131.63			0.74897	0.82932	50.81	5	2	Median	1.4624	1.2844	NaN	1	1	Median	0.67332	0.82932	NaN	1	0	Median	0.74897	0.75028	NaN	1	0	Median	0.77275	0.86799	92.943	2	1	Median	315660000	174880000	140780000	31262000	10525000	20737000	70992000	36026000	34966000	107310000	73757000	33549000	106100000	54570000	51532000	6470	1386	6107	40366;40367;40368;40369;40370	55027;55028;55029;55030	55029			4	
CMPTFQFFK	1	Unmodified	1204.5409	0.5409221	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	2	3	4	3	84.226	82.105	2	4.9196E-09	73550	160511_QHF_FH_JSI11i_2	154.31	138.1			0.9647	0.9518	33.02	12	5	Median	1.1562	0.97521	13.891	2	0	Median	0.79879	0.98332	43.106	3	2	Median	0.8313	0.82801	43.273	4	2	Median	1.1024	1.229	26.313	3	1	Median	2502700000	1246900000	1255800000	344070000	170210000	173850000	547760000	299950000	247810000	1067500000	548120000	519380000	543350000	228620000	314720000	6471	973	6108	40371;40372;40373;40374;40375;40376;40377;40378;40379;40380;40381;40382	55031;55032;55033;55034;55035;55036;55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053;55054;55055;55056;55057	55050			27	
CMPTFQFFKK	2	Unmodified	1332.6359	0.63588512	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	70.276	69.639	3	3.3754E-07	61786	160511_QHF_FH_JSI11i_3	131.52	126.3			0.28648	0.31569	36.284	4	4	Median	NaN	NaN	NaN	0	0	Median	0.36448	0.4056	44.361	2	2	Median	0.24889	0.23514	NaN	1	1	Median	0.32454	0.33624	NaN	1	1	Median	977010000	779560000	197450000	0	0	0	260900000	227580000	33323000	257560000	196360000	61196000	458540000	355610000	102930000	6472	973	6109	40383;40384;40385;40386	55058;55059;55060;55061	55058			4	
CMPTFQFFKK	2	Acetyl (K)	1374.6464	0.6464498	973	P10599	TXN	Thioredoxin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.452	75.135	2	0.00056362	41548	160513_QHF_FH_JSI11Kac_6	92.062	82.109			0.14265	0.14278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14265	0.14278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35118000	33365000	1753100	0	0	0	0	0	0	35118000	33365000	1753100	0	0	0	6473	973	6109	40387	55062	55062	741		1	
CMQLTDFILK	1	Unmodified	1267.6305	0.63046539	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.76	5	8	1						2	2	4	6	4	90.202	89.156	2	1.274E-06	80063	160511_QHF_FH_JSI10i_2	128.36	115.83			1.5034	1.4366	179.69	13	13	Median	1.2102	1.0146	220.27	2	2	Median	1.1288	1.2818	203.74	4	4	Median	1.5034	1.4366	181.12	5	5	Median	1.2137	1.375	285.56	2	2	Median	1308800000	695210000	613630000	128280000	57785000	70493000	331480000	203340000	128150000	595380000	321500000	273890000	253700000	112590000	141110000	6474	1720	6110	40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402;40403	55063;55064;55065;55066;55067;55068;55069;55070;55071;55072;55073;55074;55075;55076;55077;55078;55079;55080;55081	55079			19	
CMTNTPVVVR	0	Unmodified	1175.5791	0.57909852	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	34.388	33.468	2	4.9456E-06	28504	160511_QHF_FH_JSI11i_2	117.89	100.5			0.7652	0.7682	63.079	7	7	Median	0.5889	0.50992	NaN	1	1	Median	0.77487	0.94943	52.317	2	2	Median	1.0875	1.1117	52.263	2	2	Median	1.11	1.2245	113.17	2	2	Median	302360000	166530000	135830000	14169000	7922500	6246900	65191000	37457000	27734000	149690000	82245000	67444000	73309000	38910000	34400000	6475	1394	6111	40404;40405;40406;40407;40408;40409;40410;40411	55082;55083;55084;55085;55086;55087;55088;55089	55087			8	
CNAEEHVR	0	Unmodified	1013.4349	0.43487712	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	2	2	5.082	4.6912	2;3	0.00061167	2560	160511_QHF_FH_JSI11i_2	102.51	92.435			0.83701	0.90791	30.975	6	1	Median	NaN	NaN	NaN	0	0	Median	0.73496	0.88742	13.023	2	1	Median	0.83701	0.84657	0.097668	2	0	Median	1.3966	1.5546	7.3961	2	0	Median	888220000	458980000	429240000	0	0	0	222900000	133140000	89762000	443080000	238630000	204450000	222240000	87213000	135030000	6476	996	6112	40412;40413;40414;40415;40416;40417;40418	55090;55091;55092;55093;55094;55095;55096	55092			6	
CNECGKAFSHGSYLVQHQKIHTGEKPYECK	4	2 Acetyl (K)	3675.6657	0.66570505	3322	Q86UE3	ZNF546	Zinc finger protein 546	yes	yes	2	0	0	3		By MS/MS			16	0									1		1			102.31	96.585	3	0.0033382	57089	160513_QHF_FH_JSI10Kac_6	50.499	29.621			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89715000	89715000	0	0	0	0	89715000	89715000	0	0	0	0	0	0	0	6477	3322	6113	40419	55097	55097	2830;2831		1	
CNEIINWLDK	1	Unmodified	1303.6231	0.62307182	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							3	2	3	3	77.762	76.987	2	6.7867E-07	67279	160511_QHF_FH_JSI11i_2	123.79	111.75			0.33636	0.32913	168.87	9	8	Median	0.82492	0.71605	145.8	2	2	Median	0.7514	0.91474	183.92	2	2	Median	0.33636	0.32913	238.92	3	2	Median	0.82873	0.91681	237.15	2	2	Median	1719700000	964650000	755040000	202430000	98341000	104090000	436200000	233610000	202590000	648550000	400630000	247920000	432510000	232070000	200440000	6478	985	6114	40420;40421;40422;40423;40424;40425;40426;40427;40428;40429;40430	55098;55099;55100;55101;55102;55103;55104;55105;55106;55107;55108;55109;55110;55111;55112	55108			15	
CNEPAVWSQLAK	1	Unmodified	1401.6711	0.67108465	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		58.207	57.512	2	1.8489E-05	49891	160511_QHF_FH_JSI11i_2	129.89	59.935			0.71798	0.81421	5.9244	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69013	0.84905	NaN	1	1	Median	0.74697	0.78081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112100000	65398000	46698000	0	0	0	34015000	19551000	14464000	78080000	45846000	32234000	0	0	0	6479	2155	6115	40431;40432	55113;55114	55113			2	
CNGVLEGIR	0	Unmodified	1016.5073	0.50731378	1436;1437;1445;3263	P35579;P12883;P12882;P35580;Q7Z406;P35749	MYH9;MYH7;MYH1;MYH10;MYH14;MYH11	Myosin-9;Myosin-7;Myosin-1;Myosin-10;Myosin-14;Myosin-11	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	35.374	34.49	2	0.0032457	30219	160511_QHF_FH_JSI10i_2	60.019	48.95			1.3117	1.3817	47.597	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96216	0.98686	NaN	1	1	Median	1.7883	1.9346	NaN	1	1	Median	97587000	40743000	56844000	0	0	0	0	0	0	57867000	25271000	32596000	39720000	15473000	24248000	6480	1436;1437;3263;1445	6116	40433;40434;40435	55115;55116;55117	55117			3	
CNLLAEK	1	Unmodified	846.42694	0.4269382	55	CON__P12763;P02765	AHSG	Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		24.191	23.847	2	0.023262	19804	160511_QHF_FH_JSI11i_2	58.815	12.799		+	2.937	2.9496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.937	2.9496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68604000	25691000	42913000	0	0	0	0	0	0	68604000	25691000	42913000	0	0	0	6481	55	6117	40436	55118	55118			1	
CNLVPTDEITVYYK	1	Unmodified	1713.8284	0.82837315	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		74.834	74.652	2	6.7444E-08	67865	160511_QHF_FH_JSI11i_1	99.752	63.327			1.1946	1.4031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1946	1.4031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90395000	57058000	33337000	0	0	0	90395000	57058000	33337000	0	0	0	0	0	0	6482	1520	6118	40437;40438	55119;55120;55121	55119			3	
CNNVLYIR	0	Unmodified	1050.528	0.52804923	1998	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.33	6.34		3					1	2			2	2	2	44.133	38.468	2	5.1601E-05	32935	160511_QHF_FH_JSI11i_2	145.04	127.2			0.89875	0.98683	25.289	6	1	Median	NaN	NaN	NaN	0	0	Median	0.97769	1.1909	26.926	2	0	Median	0.80055	0.79411	15.751	2	1	Median	1.0025	1.121	17.687	2	0	Median	461900000	257500000	204400000	0	0	0	108080000	68012000	40065000	207650000	108920000	98729000	146170000	80567000	65607000	6483	1998	6119	40439;40440;40441;40442;40443;40444	55122;55123;55124;55125	55122			4	
CNTDDTIGDLK	1	Unmodified	1250.5449	0.54488108	4569	Q9BZL1	UBL5	Ubiquitin-like protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	31.061	30.489	2	0.00059284	27397	160511_QHF_FH_JSI12i_1	84.198	73.368			1.3343	1.3845	29.064	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3343	1.3845	29.064	2	2	Median	63537000	28271000	35266000	0	0	0	0	0	0	0	0	0	63537000	28271000	35266000	6484	4569	6120	40445;40446	55126;55127	55126			2	
CNTDQAGRPK	1	Unmodified	1145.5248	0.52475476	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1		By matching	By MS/MS		2	0		3									1	2		4.7188	4.4537	2;3	0.00037381	2255	160511_QHF_FH_JSI11i_2	102.07	78.112			0.8204	0.81121	15.389	3	0	Median	NaN	NaN	NaN	0	0	Median	0.50666	0.63331	NaN	1	0	Median	0.83893	0.82536	2.4448	2	0	Median	NaN	NaN	NaN	0	0	Median	235690000	133510000	102170000	0	0	0	40502000	23160000	17342000	195190000	110350000	84830000	0	0	0	6485	1410	6121	40447;40448;40449	55128;55129	55129			1	
CNTNTAIELK	1	Unmodified	1162.5652	0.56522259	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	27.149	26.837	2	0.00026049	23740	160511_QHF_FH_JSI10i_1	80.037	54.9			0.89828	1.0491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89828	1.0491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91423000	57482000	33941000	0	0	0	91423000	57482000	33941000	0	0	0	0	0	0	6486	220	6122	40450;40451	55130;55131	55131			2	
CNTPTYCDLGKAAK	2	Acetyl (K);Acetyl (Protein N-term)	1681.744	0.74399159	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	62.756	53.278	2	0.00018865	21471	160513_QHF_FH_JSI10Kac_1	67.776	61.931			1.1066	1.2548	20.628	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95998	1.093	NaN	1	0	Median	0.9463	0.88982	NaN	1	0	Median	1.2757	1.3442	NaN	1	0	Median	7461000	3590700	3870300	0	0	0	2833500	1326000	1507400	1373200	770700	602450	3254400	1494000	1760400	6487	5499	6123	40452;40453;40454	55132;55133;55134;55135	55135	3460;3463		4	
CPALLQEMVNVICQLIVMAR	0	Unmodified	2357.2092	0.20916997	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.92	101.2	3	1.1178E-05	59975	160513_QHF_FH_JSI10Kac_6	124.26	108.67			2.3377	2.8036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3377	2.8036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9026600	963900	8062700	0	0	0	9026600	963900	8062700	0	0	0	0	0	0	6488	5285	6124	40455	55136	55136			1	
CPEALFQPSFLGMESCGIHETTFNSIMK	1	Unmodified	3230.4545	0.45449822	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	101.2	101.1	3	4.1754E-59	88756	160511_QHF_FH_JSI11i_2	204.92	199.26			1.2347	1.118	24.613	5	3	Median	1.2907	1.1023	NaN	1	1	Median	1.2721	1.563	4.0933	2	2	Median	0.85752	0.88931	NaN	1	0	Median	0.99405	1.118	NaN	1	0	Median	1721900000	864120000	857790000	151600000	47131000	104470000	550540000	268730000	281810000	678230000	375000000	303230000	341550000	173260000	168290000	6489	1916;2062	6125	40456;40457;40458;40459;40460	55137;55138;55139;55140;55141;55142;55143	55140			7	
CPEALFQPSFLGMESCGIHETTFNSIMK	1	Oxidation (M)	3246.4494	0.44941284	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	0			By MS/MS	By MS/MS	2	0		4										2	2	100.55	100.38	3	2.4832E-07	87969	160511_QHF_FH_JSI11i_2	63.697	50.738			1.319	1.4091	49.161	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68434	0.70836	NaN	1	0	Median	1.4995	1.6084	18.714	2	1	Median	108390000	68310000	40076000	0	0	0	0	0	0	54573000	43856000	10717000	53812000	24454000	29359000	6490	1916;2062	6125	40461;40462;40463;40464	55144;55145;55146	55146		1571;1572	3	
CPFTGNVSIR	0	Unmodified	1149.5601	0.56007764	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	40.963	40.183	2	0.00024745	34575	160511_QHF_FH_JSI11i_2	80.438	63.198			1.0017	1.138	13.109	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89877	1.0774	NaN	1	0	Median	1.0758	1.0594	17.855	2	0	Median	1.0935	1.2517	NaN	1	0	Median	611000000	313870000	297120000	0	0	0	152970000	80094000	72879000	321820000	168220000	153600000	136200000	65557000	70647000	6491	1996	6126	40465;40466;40467;40468	55147;55148;55149;55150	55148			4	
CPLLKPWALTFSYGR	1	Acetyl (K)	1849.9549	0.95491107	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		94.175	84.792	3	0.00088361	47908	160513_QHF_FH_JSI11Kac_6	75.316	65.259			0.20761	0.20156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20761	0.20156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69380000	56530000	12851000	0	0	0	0	0	0	69380000	56530000	12851000	0	0	0	6492	803	6127	40469	55151	55151	428		1	
CPLSGACYSPEFK	1	Unmodified	1514.6534	0.65338567	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		49.967	49.549	2	0.001972	44814	160511_QHF_FH_JSI11i_1	70.488	52.43			1.7361	1.8348	34.453	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0112	2.341	NaN	1	1	Median	1.4986	1.4381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46582000	13066000	33516000	0	0	0	17010000	3551400	13458000	29572000	9514700	20058000	0	0	0	6493	1805	6128	40470;40471	55152;55153	55152			2	
CPNLTHLNLSGNK	1	Unmodified	1466.73	0.72999651	1487	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.492		10	7							2	3	6	6	40.57	39.988	2;3	1.9509E-05	34911	160511_QHF_FH_JSI9i_2	84.566	75.033			1.1252	1.0476	68.338	17	16	Median	1.9754	1.7084	51.431	2	1	Median	0.6651	0.82765	76.873	3	3	Median	0.79519	0.74288	80.059	6	6	Median	0.91712	0.94636	66.788	6	6	Median	1558900000	807220000	751720000	93172000	36022000	57150000	298230000	165000000	133230000	768390000	420440000	347950000	399140000	185740000	213390000	6494	1487	6129	40472;40473;40474;40475;40476;40477;40478;40479;40480;40481;40482;40483;40484;40485;40486;40487;40488	55154;55155;55156;55157;55158;55159;55160;55161;55162;55163;55164;55165;55166;55167;55168;55169;55170;55171;55172;55173	55160			20	
CPNLTYLNLSGNK	1	Unmodified	1492.7344	0.73441319	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		62.122	61.431	2	0.00089114	53578	160511_QHF_FH_JSI11i_2	65.241	54.433			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6495	4419	6130	40489;40490	55174;55175	55174			2	
CPQIVIAFYEER	0	Unmodified	1523.7442	0.74424959	1572;2367	P45973;Q13185	CBX5;CBX3	Chromobox protein homolog 5;Chromobox protein homolog 3	no	no	0	0	0	0		By MS/MS			16	0									1		1			81.563	75.97	2	0.0013044	41863	160513_QHF_FH_JSI10Kac_6	79.741	43.781			3.0089	3.6653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0089	3.6653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26806000	6616100	20190000	0	0	0	26806000	6616100	20190000	0	0	0	0	0	0	6496	1572;2367	6131	40491	55176	55176			1	
CPSIAAAIAAVNALHGR	0	Unmodified	1690.8937	0.8937078	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0		By MS/MS			9	7		1							1		2			85.539	82.479	3	0.00018769	42910	160513_QHF_FH_JSI10Kac_6	112.5	98.838			1.5487	1.8453	65.774	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5487	1.8453	65.774	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113220000	54984000	58233000	0	0	0	113220000	54984000	58233000	0	0	0	0	0	0	6497	2538	6132	40492;40493	55177;55178	55178			2	
CPSIILHDR	0	Unmodified	1109.5652	0.56516301	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		29.548	29.174	3	0.011675	24619	160511_QHF_FH_JSI11i_2	43.958	35.471			0.10284	0.10407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10284	0.10407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19933000	17119000	2814100	0	0	0	0	0	0	19933000	17119000	2814100	0	0	0	6498	5300	6133	40494	55179	55179			1	
CPTLEQYAMR	0	Unmodified	1267.5689	0.56892776	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.874	44.381	2	0.015008	38106	160511_QHF_FH_JSI11i_2	51.949	47.337			0.087049	0.090422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.087049	0.090422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78664000	74146000	4518000	0	0	0	0	0	0	78664000	74146000	4518000	0	0	0	6499	1630	6134	40495	55180	55180			1	
CPTQFPLILWHPYAR	0	Unmodified	1897.9661	0.96614446	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	2	1	1	87.461	80.777	3	4.0833E-06	42951	160513_QHF_FH_JSI11Kac_6	84.842	74.785			1.1475	1.3312	29.853	5	1	Median	1.886	1.6225	NaN	1	0	Median	0.99832	1.2124	22.729	2	1	Median	0.81249	0.76475	NaN	1	0	Median	1.2843	1.3312	NaN	1	0	Median	620730000	318940000	301790000	51917000	21050000	30867000	237080000	135300000	101770000	211950000	111840000	100120000	119780000	50749000	69034000	6500	4260	6135	40496;40497;40498;40499;40500	55181;55182;55183;55184;55185;55186;55187;55188	55181			7	
CPVHFYWVR	0	Unmodified	1262.6019	0.60188287	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.229	54.94	3	0.00090152	30097	160513_QHF_FH_JSI10Kac_6	55.112	49.11			0.77372	0.91167	34.661	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77372	0.91167	NaN	1	0	Median	0.65489	0.64558	NaN	1	0	Median	1.1974	1.2912	NaN	1	0	Median	78992000	44616000	34377000	0	0	0	47936000	28015000	19921000	15557000	10092000	5465400	15499000	6508800	8989800	6501	4890	6136	40501;40502;40503;40504	55189;55190;55191;55192;55193;55194	55194			6	
CQANNWTGQLSYRTLATVSAGAAAPQPQTTSTASSR	0	Unmodified	3751.7972	0.79724781	86	D6RIA3	LOC285556		yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	41.243	40.518	4	0.040265	36579	160511_QHF_FH_JSI11i_1	11.995	10.16			0.98676	0.89037	4.2946	3	0	Median	1.081	0.88783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98676	0.95772	NaN	1	0	Median	0.84815	0.89037	NaN	1	0	Median	313250000	153540000	159710000	108340000	50579000	57765000	0	0	0	81707000	48119000	33587000	123200000	54844000	68357000	6502	86	6137	40505;40506;40507	55195;55196;55197	55195			3	
CQEVISWLDANTLAEK	1	Unmodified	1875.9037	0.90366336	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	10	16								4	7	8	7	91.218	90.776	2;3	6.7469E-22	80269	160511_QHF_FH_JSI10i_2	138.42	129.47			0.41138	0.42152	220.03	16	16	Median	1.2939	1.111	137.03	2	2	Median	0.095464	0.11108	127.86	4	4	Linear	7.0844	6.7753	282.3	5	5	Median	0.19012	0.19305	263.67	5	5	Median	679280000	400590000	278690000	61787000	31278000	30509000	193450000	144280000	49169000	244790000	133550000	111250000	179250000	91481000	87766000	6503	954	6138	40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530;40531;40532;40533	55198;55199;55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224;55225;55226;55227;55228;55229;55230	55230			33	
CQEVISWLDANTLAEKDEFEHK	2	Unmodified	2661.2381	0.23808138	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1			By MS/MS		2	0		1										1		87.752	87.181	4	0.01596	76622	160511_QHF_FH_JSI11i_2	32.337	23.127			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8916500	0	8916500	0	0	0	0	0	0	8916500	0	8916500	0	0	0	6504	954	6139	40534	55231	55231			1	
CQHAAEIITDLLR	0	Unmodified	1538.7875	0.78751139	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	81.249	80.363	3	0.00018279	70546	160511_QHF_FH_JSI11i_2	63.185	49.156			4.6491	4.8002	75.344	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9594	2.8176	NaN	1	1	Median	7.3034	8.1777	NaN	1	1	Median	26026000	5432900	20593000	0	0	0	0	0	0	16959000	4439300	12519000	9067800	993590	8074300	6505	3966	6140	40535;40536;40537	55232;55233;55234	55233			3	
CQHLQAEK	1	Unmodified	1012.476	0.47601365	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			5.6403	5.2115	3	0.02386	3275	160511_QHF_FH_JSI10i_2	35.445	27.225			0.68979	0.83932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68979	0.83932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84733000	49544000	35189000	0	0	0	84733000	49544000	35189000	0	0	0	0	0	0	6506	1436	6141	40538	55235	55235			1	
CQIIYPR	0	Unmodified	948.48512	0.48512178	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	30.579	30.199	2	0.005012	25605	160511_QHF_FH_JSI11i_2	107.74	71.188			0.56835	0.57296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56835	0.57296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61480000	39086000	22393000	0	0	0	0	0	0	61480000	39086000	22393000	0	0	0	6507	2692	6142	40539;40540;40541	55236;55237;55238	55237			3	
CQLEINFNTLQTK	1	Unmodified	1607.7977	0.79774172	361;1021	O43707;Q08043;P12814;P35609	ACTN4;ACTN3;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2	no	no	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	72.057	71.596	2	5.4469E-07	61900	160511_QHF_FH_JSI12i_2	93.821	69.029			0.85881	0.85247	27.966	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73311	0.69951	NaN	1	1	Median	1.0061	1.0389	NaN	1	1	Median	90283000	45652000	44632000	0	0	0	0	0	0	38681000	20264000	18416000	51603000	25387000	26215000	6508	361;1021	6143	40542;40543;40544	55239;55240;55241	55240			3	
CQNALQQVVAR	0	Unmodified	1285.6561	0.65610329	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.67	0.471	1	2								1		2		38.075	37.484	2	9.4442E-05	32742	160511_QHF_FH_JSI9i_2	99.136	73.561			0.18342	0.184	49.901	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18342	0.184	49.901	2	2	Median	NaN	NaN	NaN	0	0	Median	105250000	82872000	22381000	12659000	12659000	0	0	0	0	92594000	70213000	22381000	0	0	0	6509	2242	6144	40545;40546;40547	55242;55243;55244	55243			3	
CQQLAAYGILEK	1	Unmodified	1392.7071	0.7071358	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.873	60.362	2	0.0014876	52532	160511_QHF_FH_JSI11i_2	74.944	63.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17157000	17157000	0	0	0	0	0	0	0	17157000	17157000	0	0	0	0	6510	4411	6145	40548	55245	55245			1	
CQSLTEDLEFRK	1	Unmodified	1524.7242	0.72424243	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1			By MS/MS		2	0		2										2		49.017	48.494	2;3	0.025791	41700	160511_QHF_FH_JSI11i_2	34.179	27.297			1.1355	1.129	71.157	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1355	1.129	71.157	2	2	Median	NaN	NaN	NaN	0	0	Median	83368000	36868000	46500000	0	0	0	0	0	0	83368000	36868000	46500000	0	0	0	6511	1180	6146	40549;40550	55246;55247	55246			2	
CQTVIVQSFLR	0	Unmodified	1349.7126	0.71255553	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15	0								2			1	1		77.755	67.235	2	0.012821	35776	160513_QHF_FH_JSI11Kac_5	61.353	48.234			0.65751	0.70764	23.077	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7095	0.83307	NaN	1	1	Median	0.60933	0.6011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5241200	2512800	2728400	0	0	0	2294900	960960	1333900	2946400	1551900	1394500	0	0	0	6512	2909	6147	40551;40552	55248;55249	55248			2	
CQVFEETQIGGER	0	Unmodified	1551.6988	0.69875596	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	2	3	3	44.591	43.862	2	3.0598E-07	38713	160511_QHF_FH_JSI10i_2	137.17	114.53			0.94553	1.0602	36.025	8	4	Median	0.83893	0.72244	NaN	1	1	Median	0.87526	1.0602	12.935	2	0	Median	0.91919	0.88075	33.562	3	2	Median	1.5614	1.6769	24.743	2	1	Median	528040000	246390000	281650000	11632000	7089500	4542900	153180000	69818000	83364000	203180000	103310000	99870000	160040000	66175000	93869000	6513	4321	6148	40553;40554;40555;40556;40557;40558;40559;40560;40561	55250;55251;55252;55253;55254;55255;55256;55257;55258;55259;55260;55261;55262	55262			13	
CQYVTEK	1	Unmodified	926.41677	0.41676744	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.827	10.443	2	0.0019697	8299	160511_QHF_FH_JSI12i_1	114.6	85.029			0.99986	0.99407	57.808	4	0	Median	1.5164	1.2588	NaN	1	0	Median	0.65929	0.78502	NaN	1	0	Median	0.52226	0.50043	NaN	1	0	Median	1.803	1.901	NaN	1	0	Median	656370000	325550000	330820000	142060000	54083000	87975000	219920000	131160000	88761000	150600000	93383000	57220000	143790000	46919000	96866000	6514	803;944	6149	40562;40563;40564;40565	55263;55264	55264			2	
CRVDLPLAVLSK	1	Unmodified	1369.7752	0.77515579	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	71.949	71.358	3	4.2746E-05	63387	160511_QHF_FH_JSI11i_3	89.629	81.031			1.0592	1.0675	63.082	8	6	Median	2.3676	1.9817	NaN	1	1	Median	0.79611	0.96787	NaN	1	0	Median	0.94981	0.94791	17.742	3	2	Median	1.6768	1.7963	99.991	3	3	Median	289390000	124570000	164820000	8331300	2593700	5737600	36730000	20639000	16091000	129930000	69453000	60478000	114400000	31880000	82516000	6515	4760	6150	40566;40567;40568;40569;40570;40571;40572;40573	55265;55266;55267;55268;55269;55270;55271;55272;55273;55274	55266			10	
CSALATQYMHCVNHAK	1	Unmodified	1889.8335	0.83349208	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	36.344	36.199	3	1.1809E-05	30707	160511_QHF_FH_JSI12i_3	105.46	95.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9085700	0	9085700	0	0	0	0	0	0	0	0	0	9085700	0	9085700	6516	5098	6151	40574	55275	55275			1	
CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK	1	Unmodified	3944.8639	0.86393039	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		86.454	85.877	4;5	0.041122	75864	160511_QHF_FH_JSI11i_2	16.846	15.668			1.1674	1.3809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1674	1.3809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36448000	22088000	14360000	0	0	0	6637700	5467100	1170600	29810000	16620000	13190000	0	0	0	6517	2656	6152	40575;40576	55276;55277	55276			1	
CSESIPK	1	Unmodified	819.37965	0.37965365	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.586	11.183	2	0.011062	8806	160511_QHF_FH_JSI11i_1	72.138	49.516			1.1804	1.1466	14.284	4	0	Median	1.274	1.0393	NaN	1	0	Median	1.129	1.3143	NaN	1	0	Median	1.0045	0.98425	NaN	1	0	Median	1.2342	1.265	NaN	1	0	Median	601450000	275150000	326300000	83887000	36012000	47876000	155050000	72268000	82784000	188840000	98393000	90442000	173680000	68477000	105200000	6518	939	6153	40577;40578;40579;40580	55278	55278			1	
CSFDVVKR	1	Acetyl (K)	1051.5121	0.51206481	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.442	37.927	2	0.014411	22433	160513_QHF_FH_JSI11Kac_4	77.318	44.963			0.0801	0.078999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0801	0.078999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4678200	4065100	613090	0	0	0	0	0	0	4678200	4065100	613090	0	0	0	6519	5708	6154	40581	55279	55279	3534		1	
CSGPGLSPGMVR	0	Unmodified	1216.5693	0.56926211	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.67	0.471	1	2								1		2		36.573	35.996	2	0.00010795	31467	160511_QHF_FH_JSI9i_2	103.26	94.723			0.94495	0.95569	26.215	3	3	Plateau	1.6673	1.4662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95363	0.93288	3.4157	2	2	Median	NaN	NaN	NaN	0	0	Median	350540000	164740000	185800000	45946000	20807000	25139000	0	0	0	304590000	143930000	160660000	0	0	0	6520	1192	6155	40582;40583;40584	55280;55281;55282	55281			3	
CSHLLVK	1	Unmodified	855.46366	0.46365805	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		14.708	14.282	3	0.0097161	11906	160511_QHF_FH_JSI10i_2	48.756	39.983			10.18	11.212	28.25	2	2	Median	NaN	NaN	NaN	0	0	Median	11.226	13.691	NaN	1	1	Median	9.2318	9.1818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52973000	4894200	48079000	0	0	0	27042000	2825100	24217000	25931000	2069100	23862000	0	0	0	6521	2433	6156	40585;40586	55283;55284	55284			2	
CSILAAANPAYGR	0	Unmodified	1362.6714	0.671419	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.748	49.799	2	8.0784E-13	43969	160511_QHF_FH_JSI10i_2	127.3	98.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6522	1411	6157	40587	55285	55285			1	
CSKLPSSTKSGWPR	2	2 Acetyl (K)	1673.8195	0.8195398	4918	Q9NQC1	JADE2	Protein Jade-2	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.789						1	5	7	2	1	6	4	4	62.655	52.167	2;3	2.3867E-15	26400	160513_QHF_FH_JSI10Kac_5	132.59	82.303			0.96456	1.0641	18.266	15	0	Median	1.317	1.1141	NaN	1	0	Median	0.88736	1.0634	16.213	6	0	Median	0.87652	0.86276	12.252	4	0	Median	1.0702	1.1627	7.5114	4	0	Median	182460000	88117000	94347000	7803200	3853700	3949500	59692000	29047000	30646000	63255000	33176000	30078000	51714000	22040000	29674000	6523	4918	6158	40588;40589;40590;40591;40592;40593;40594;40595;40596;40597;40598;40599;40600;40601;40602	55286;55287;55288;55289;55290;55291;55292;55293;55294;55295;55296;55297;55298;55299;55300;55301;55302;55303;55304;55305;55306;55307	55303	3265;3266		22	
CSLPAEEDSVLEK	1	Unmodified	1475.6814	0.68137456	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	48.897	48.396	2	0.00034779	43779	160511_QHF_FH_JSI11i_1	71.159	60.401			0.60992	0.72299	54.884	3	2	Median	NaN	NaN	NaN	0	0	Median	0.60992	0.72299	NaN	1	1	Median	0.59079	0.57807	NaN	1	0	Median	1.6029	1.6396	NaN	1	1	Median	211740000	126370000	85369000	0	0	0	61394000	39154000	22239000	84824000	55649000	29174000	65518000	31562000	33955000	6524	1298	6159	40603;40604;40605	55308;55309;55310	55308			3	
CSQAVYAAEK	1	Unmodified	1125.5125	0.51245874	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.042	14.588	2	6.4574E-06	11945	160511_QHF_FH_JSI9i_1	138.22	127.8			0.31318	0.32364	57.516	4	4	Median	0.19225	0.15789	NaN	1	1	Median	0.4382	0.51079	NaN	1	1	Median	0.22384	0.22171	NaN	1	1	Median	0.45097	0.47242	NaN	1	1	Median	718590000	452430000	266160000	75141000	71508000	3633400	210820000	108900000	101910000	199710000	132920000	66786000	232930000	139100000	93830000	6525	1191	6160	40606;40607;40608;40609	55311;55312;55313;55314	55314			4	
CSSILLHGK	1	Unmodified	1013.5328	0.53280025	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		21.207	20.884	2	0.016194	17222	160511_QHF_FH_JSI11i_2	53.753	38.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13445000	0	13445000	0	0	0	0	0	0	13445000	0	13445000	0	0	0	6526	821	6161	40610	55315	55315			1	
CSTPEEIK	1	Unmodified	962.4379	0.43789681	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		13.221	13.056	2	0.0014389	10612	160511_QHF_FH_JSI11i_1	84.743	56.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6527	1925	6162	40611;40612;40613	55316;55317;55318	55317			3	
CSTPEEIKK	2	Unmodified	1090.5329	0.53285983	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	10.298	9.8425	3	0.0020656	7259	160511_QHF_FH_JSI11i_2	52.167	35.45			0.79482	0.86006	47.287	6	2	Median	1.6587	1.3846	NaN	1	0	Median	0.78704	0.92077	NaN	1	0	Median	0.79482	0.79279	1.872	2	0	Median	1.0976	1.2315	90.374	2	2	Median	583060000	276640000	306420000	23614000	7370600	16243000	97158000	50328000	46830000	224380000	112010000	112370000	237910000	106930000	130980000	6528	1925	6163	40614;40615;40616;40617;40618;40619	55319;55320;55321	55321			3	
CSVLAAANPVYGR	0	Unmodified	1376.6871	0.68706906	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			51.43	50.481	2	2.4988E-05	44437	160511_QHF_FH_JSI10i_2	118.4	73.242			0.73824	0.88589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73824	0.88589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42777000	24714000	18063000	0	0	0	42777000	24714000	18063000	0	0	0	0	0	0	6529	1254	6164	40620	55322	55322			1	
CSVLPLSQNQEFMPFVK	1	Unmodified	2022.9907	0.99070423	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	98.987	98.833	2	5.1868E-06	86586	160511_QHF_FH_JSI9i_2	112.43	100.07			0.84268	0.83879	30.792	5	2	Median	0.87626	0.74219	NaN	1	1	Median	0.71657	0.86319	NaN	1	0	Median	0.63202	0.61649	43.545	2	1	Median	0.91755	1.0179	NaN	1	0	Median	106990000	58487000	48500000	9635100	5374200	4260900	25388000	13784000	11604000	44328000	24908000	19420000	27636000	14421000	13216000	6530	1519	6165	40621;40622;40623;40624;40625	55323;55324;55325;55326;55327;55328;55329;55330;55331;55332;55333	55327			11	
CSVSLSNVEAR	0	Unmodified	1220.5819	0.58193529	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.75	5.36	1	2					1				1	1	2	37.905	34.629	2	1.5619E-05	29521	160511_QHF_FH_JSI12i_2	105.4	97.176			1.2183	1.2771	35.69	4	2	Median	NaN	NaN	NaN	0	0	Median	1.6037	1.9495	NaN	1	1	Median	0.9642	0.96843	NaN	1	0	Median	1.2183	1.2771	36.34	2	1	Median	183160000	90245000	92912000	0	0	0	36925000	17087000	19837000	3544500	1966900	1577600	142690000	71191000	71497000	6531	1604	6166	40626;40627;40628;40629	55334;55335;55336;55337;55338	55335			5	
CSWLVVQCLQR	0	Unmodified	1447.7064	0.7064243	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	76.601	69.875	2	3.5952E-58	38489	160513_QHF_FH_JSI10Kac_6	222.42	196.8			0.74447	0.72209	46.223	5	1	Median	0.69286	0.60194	NaN	1	0	Median	0.91892	1.0633	NaN	1	0	Median	0.53505	0.51305	48.336	2	1	Median	1.0587	1.1351	NaN	1	0	Median	310050000	167630000	142420000	34838000	21119000	13719000	191110000	95124000	95989000	55376000	36082000	19293000	28724000	15303000	13421000	6532	1051	6167	40630;40631;40632;40633;40634	55339;55340;55341;55342;55343;55344	55343			6	
CSYQPTMEGVHTVHVTFAGVPIPR	0	Unmodified	2682.3047	0.30466158	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.3		5	2						3	1	4	2	3	78.277	75.53	3;4	1.3156E-22	39115	160513_QHF_FH_JSI10Kac_6	178.53	163.03			1.0915	1.1228	31.377	9	4	Median	1.0674	0.91846	NaN	1	0	Median	1.0144	1.1815	24.647	3	1	Median	0.96483	0.94623	23.052	2	1	Median	1.2903	1.4062	35.562	3	2	Median	416770000	195420000	221350000	49647000	20252000	29395000	171050000	92491000	78555000	136790000	62795000	73998000	59289000	19886000	39403000	6533	1192	6168	40635;40636;40637;40638;40639;40640;40641;40642;40643;40644	55345;55346;55347;55348;55349;55350;55351;55352;55353	55353			9	
CTESEEEEVTK	1	Unmodified	1339.5449	0.54494066	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				13.4	12.489	2	0.0041814	9908	160511_QHF_FH_JSI9i_1	65.719	55.196			1.5826	1.2533	NaN	1	1	Median	1.5826	1.2533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25632000	14766000	10867000	25632000	14766000	10867000	0	0	0	0	0	0	0	0	0	6534	1824	6169	40645	55354	55354			1	
CTGGEVGATSALAPK	1	Unmodified	1417.6871	0.68712864	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.48	5.59	13	1	2		2	6	1			4	8	7	6	36.562	32.885	2;3	2.4207E-16	18801	160513_QHF_FH_JSI11Kac_3	141.13	117.89			0.9502	0.92513	69.156	21	16	Median	1.2118	0.98157	73.27	3	2	Median	0.6126	0.67452	66.381	7	6	Median	0.87268	0.85326	60.637	6	4	Median	1.4407	1.5939	84.455	5	4	Median	3991200000	1964100000	2027100000	500650000	249660000	250990000	1387800000	828650000	559140000	959030000	488440000	470590000	1143800000	397340000	746420000	6535	1340	6170	40646;40647;40648;40649;40650;40651;40652;40653;40654;40655;40656;40657;40658;40659;40660;40661;40662;40663;40664;40665;40666;40667;40668;40669;40670	55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377;55378;55379;55380;55381;55382;55383;55384	55366			30	
CTLPLTGK	1	Unmodified	888.47389	0.47388839	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	2	1	35.031	32.231	2	0.0045395	28721	160511_QHF_FH_JSI10i_1	75.738	58.353			1.0543	0.85531	34.808	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.99651	1.1522	NaN	1	1	Median	1.0864	1.0776	59.998	2	1	Median	1.1154	1.1315	NaN	1	0	Median	558560000	308720000	249840000	0	0	0	201290000	111790000	89497000	228070000	138480000	89588000	129200000	58440000	70755000	6536	1865	6171	40671;40672;40673;40674	55385;55386;55387	55386			3	
CTPSVISFGSK	1	Unmodified	1181.5751	0.575059	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.424	50.028	2	0.0028079	42832	160511_QHF_FH_JSI12i_2	70.977	49.47			0.68002	0.72144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68002	0.72144	NaN	1	1	Median	23336000	13933000	9403700	0	0	0	0	0	0	0	0	0	23336000	13933000	9403700	6537	3852	6172	40675	55388	55388			1	
CTQDLGNSTK	1	Unmodified	1122.4975	0.49753696	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	8.5418	8.115	2	9.6869E-05	6009	160511_QHF_FH_JSI10i_1	100.58	80.03			2.4352	2.7875	19.085	3	3	Plateau	2.4352	1.9985	NaN	1	1	Median	2.0932	2.447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8447	2.9266	NaN	1	1	Median	112350000	32145000	80205000	24145000	5960700	18185000	40494000	11325000	29169000	0	0	0	47711000	14859000	32851000	6538	5616	6173	40676;40677;40678	55389;55390;55391	55390			3	
CTTDHISAAGPWLK	1	Unmodified	1555.7453	0.74531222	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	3	1	49.474	48.644	2;3	3.4202E-06	41904	160511_QHF_FH_JSI11i_2	134.13	116.69			0.7402	0.81216	36.147	6	3	Median	0.47004	0.41016	NaN	1	1	Median	0.74686	0.92918	NaN	1	0	Median	0.70378	0.71188	12.143	3	2	Plateau	1.0692	1.1929	NaN	1	0	Median	423440000	231990000	191460000	27288000	15173000	12115000	87941000	49324000	38617000	211390000	125320000	86068000	96826000	42169000	54657000	6539	4315	6174	40679;40680;40681;40682;40683;40684;40685	55392;55393;55394;55395;55396;55397;55398;55399	55397			8	
CTVFHGAQVEDAFR	0	Unmodified	1635.7464	0.74637486	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	51.081	50.112	2;3	2.381E-41	43168	160511_QHF_FH_JSI11i_2	243.53	214.8			0.96203	1.0835	26.332	7	1	Median	1.2869	1.0835	NaN	1	0	Median	0.89333	1.0822	11.011	2	1	Median	0.66344	0.67571	1.5542	2	0	Median	1.0826	1.2213	2.3161	2	0	Median	1149800000	607600000	542180000	92828000	38583000	54245000	268130000	130280000	137850000	448070000	270870000	177200000	340760000	167870000	172890000	6540	1650	6175	40686;40687;40688;40689;40690;40691;40692	55400;55401;55402;55403;55404;55405;55406;55407;55408;55409;55410;55411	55408			12	
CTVIAAANPIGGR	0	Unmodified	1298.6765	0.67650438	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	51.648	45.497	2	0.00013928	39205	160511_QHF_FH_JSI12i_2	108.67	71.192			1.1115	1.1323	22.13	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3726	1.3241	NaN	1	1	Median	0.90003	0.96829	NaN	1	1	Median	34669000	19630000	15039000	0	0	0	0	0	0	2773700	1182000	1591700	31895000	18448000	13448000	6541	1674	6176	40693;40694	55412;55413	55412			2	
CTYLVLDEADR	0	Unmodified	1353.6235	0.62346575	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.722	55.061	2	0.00011315	49990	160511_QHF_FH_JSI12i_1	97.456	88.122			1.868	1.9807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.868	1.9807	NaN	1	1	Median	45146000	16917000	28229000	0	0	0	0	0	0	0	0	0	45146000	16917000	28229000	6542	3893	6177	40695	55414	55414			1	
CVANNQVETLEK	1	Unmodified	1403.6715	0.67147858	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	3	1	31.131	29.423	2	1.3702E-05	25775	160511_QHF_FH_JSI9i_1	94.363	75.092			1.8408	1.7979	82.079	7	7	Median	3.4787	2.8474	NaN	1	1	Median	0.8835	1.0301	108.43	2	2	Median	1.8408	0.76224	95.746	3	3	Plateau	1.7782	1.8552	NaN	1	1	Median	575170000	248840000	326340000	67650000	12137000	55513000	204030000	90203000	113820000	149400000	89399000	59998000	154100000	57097000	97003000	6543	1544	6178	40696;40697;40698;40699;40700;40701;40702;40703	55415;55416;55417;55418;55419;55420;55421;55422;55423	55423			9	
CVAQASK	1	Unmodified	762.36942	0.36942332	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	4.9448	4.7181	2	0.0044769	2614	160511_QHF_FH_JSI10i_1	98.418	81.454			0.79094	0.77055	170.44	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0357	1.2175	NaN	1	0	Median	0.79094	0.77055	NaN	1	0	Median	17.581	18.055	NaN	1	0	Median	556010000	249840000	306170000	0	0	0	193820000	112490000	81326000	261200000	130150000	131050000	100990000	7200700	93794000	6544	109	6179	40704;40705;40706;40707	55424;55425;55426;55427;55428	55427			5	
CVELVHEEMQR	0	Unmodified	1428.649	0.648969	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	36.002	35.119	2	0.01089	29927	160511_QHF_FH_JSI11i_2	56.563	46.331			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15204000	0	15204000	0	0	0	0	0	0	9080600	0	9080600	6123000	0	6123000	6545	133	6180	40708;40709	55429;55430	55430			2	
CVFEMPNENDK	1	Unmodified	1381.5642	0.56423631	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.781	48.102	2	4.6133E-07	43316	160511_QHF_FH_JSI11i_1	116.3	84.37			1.1662	1.15	32.982	4	0	Median	1.32	1.0706	NaN	1	0	Median	1.0304	1.2352	NaN	1	0	Median	0.7663	0.7303	NaN	1	0	Median	1.581	1.6104	NaN	1	0	Median	291800000	140150000	151640000	42759000	16966000	25793000	54264000	29409000	24855000	107980000	59971000	48009000	86794000	33809000	52985000	6546	5185	6181	40710;40711;40712;40713	55431;55432;55433;55434;55435;55436;55437;55438	55431			8	
CVLLSNLSSTSHVPEVDPGSAELQK	1	Unmodified	2666.3221	0.32214536	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1			1	3	4	77.389	75.52	3;4	9.3061E-29	67134	160511_QHF_FH_JSI11i_2	148.49	138.84			0.65869	0.64293	56.449	8	6	Median	NaN	NaN	NaN	0	0	Median	0.44367	0.53515	NaN	1	1	Median	0.64519	0.63642	34.956	3	2	Median	0.99214	1.086	59.91	4	3	Median	1299900000	809960000	489990000	0	0	0	73686000	51210000	22476000	610420000	448840000	161580000	615840000	309900000	305930000	6547	1650	6182	40714;40715;40716;40717;40718;40719;40720;40721	55439;55440;55441;55442;55443;55444;55445;55446;55447;55448	55443			10	
CVLMPMPSLGFNR	0	Unmodified	1520.7302	0.73019621	4402	Q9BSR8	YIPF4	Protein YIPF4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		90.724	90.233	2	0.0081515	80112	160511_QHF_FH_JSI10i_2	48.64	31.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6548	4402	6183	40722;40723	55449;55450	55450			2	
CVLNEGMPIYR	0	Unmodified	1350.6424	0.64242706	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.043	56.537	2	8.3866E-05	49097	160511_QHF_FH_JSI11i_2	89.886	69.556			0.89244	0.88797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89244	0.88797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154340000	79028000	75315000	0	0	0	0	0	0	154340000	79028000	75315000	0	0	0	6549	1376	6184	40724	55451	55451			1	
CVLPEEDSGELAK	1	Unmodified	1445.6708	0.67080988	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	53.588	44.448	2	0.022475	23864	160513_QHF_FH_JSI12Kac_3	55.567	39.676			1.856	1.9475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.856	1.9475	NaN	1	1	Median	986600	372680	613920	0	0	0	0	0	0	0	0	0	986600	372680	613920	6550	5595	6185	40725	55452	55452			1	
CVLSGPPQLEK	1	Unmodified	1226.6329	0.63290823	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.686	47.288	2	0.0042787	40416	160511_QHF_FH_JSI12i_2	65.347	54.127			1.1133	1.2378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1133	1.2378	NaN	1	1	Median	15066000	5849900	9216600	0	0	0	0	0	0	0	0	0	15066000	5849900	9216600	6551	4348	6186	40726	55453	55453			1	
CVNTTLQIK	1	Unmodified	1075.5696	0.56957969	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	3	1	37.949	35.136	2	0.00043185	29796	160511_QHF_FH_JSI12i_2	90.601	71.825			2.1304	2.397	90.927	5	5	Median	3.6652	3.0817	NaN	1	1	Median	2.9379	3.6271	NaN	1	1	Median	0.90509	0.90702	122.89	2	2	Median	2.1304	2.397	NaN	1	1	Median	170000000	73817000	96181000	23147000	6757900	16389000	28960000	11717000	17243000	67842000	33008000	34834000	50049000	22334000	27715000	6552	2169	6187	40727;40728;40729;40730;40731;40732	55454;55455;55456;55457;55458;55459	55455			6	
CVSSPHFQVAER	0	Unmodified	1415.6616	0.66158259	2570;2394;2735	Q16537;Q15173;Q14738;Q13362	PPP2R5E;PPP2R5B;PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	0	0	0	0			By MS/MS		3	0			1									1		30.012	30.012	3	0.048391	26082	160511_QHF_FH_JSI11i_3	38.674	31.218			1.3598	1.2281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3598	1.2281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33525000	14923000	18602000	0	0	0	0	0	0	33525000	14923000	18602000	0	0	0	6553	2735;2570;2394	6188	40733	55460	55460			0	
CVSTLLDLIQTK	1	Unmodified	1389.7538	0.75375164	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0				By MS/MS	3	0			1										1	97.209	97.224	2	2.5321E-05	84206	160511_QHF_FH_JSI12i_3	115.18	76.153			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5100400	0	5100400	0	0	0	0	0	0	0	0	0	5100400	0	5100400	6554	2046;2296	6189	40734	55461;55462	55461			2	
CVTSELLK	1	Unmodified	948.49502	0.49501776	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.571	38.663	2	0.010794	33080	160511_QHF_FH_JSI11i_2	54.776	25.627			0.49671	0.52477	8.1387	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49653	0.49543	NaN	1	0	Median	0.49689	0.55586	NaN	1	0	Median	76517000	45704000	30813000	0	0	0	0	0	0	46180000	32496000	13684000	30337000	13208000	17129000	6555	570	6190	40735;40736	55463;55464	55464			2	
CVVVGDGAVGK	1	Unmodified	1059.5383	0.53827956	1924;2045;2128	P60953;P17081;Q9H4E5;P63000;P15153;P60763;P84095	CDC42;RHOQ;RHOJ;RAC1;RAC2;RAC3;RHOG	Cell division control protein 42 homolog;Rho-related GTP-binding protein RhoQ;Rho-related GTP-binding protein RhoJ;Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3;Rho-related GTP-binding protein RhoG	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	5.98	4	3				5	3			1	4	5	5	32.541	26.875	2	1.5834E-05	16421	160513_QHF_FH_JSI11Kac_4	105.52	69.125			1.2557	1.5877	100.15	13	13	Median	NaN	NaN	NaN	0	0	Median	1.7187	2.0581	79.631	4	4	Median	0.69161	0.66353	108.77	5	5	Median	1.8845	2.0719	102.58	4	4	Median	842580000	336560000	506020000	0	0	0	247290000	73354000	173940000	428530000	216710000	211820000	166760000	46499000	120260000	6556	1924;2045;2128	6191	40737;40738;40739;40740;40741;40742;40743;40744;40745;40746;40747;40748;40749;40750;40751	55465;55466;55467;55468;55469;55470;55471;55472;55473;55474;55475;55476;55477;55478;55479	55472			15	
CVYKPMQPGPHVVK	2	Unmodified	1638.8374	0.83743847	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	28.618	28.595	3;4	0.00047721	24731	160511_QHF_FH_JSI11i_3	61.11	45.226			1.6411	1.565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6411	1.565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78423000	25524000	52899000	0	0	0	0	0	0	64893000	25524000	39369000	13530000	0	13530000	6557	512	6192	40752;40753;40754	55480;55481;55482	55481			3	
CVYKPMQPGPHVVK	2	Acetyl (K)	1680.848	0.84800316	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.757	43.032	3	0.0045731	23293	160513_QHF_FH_JSI11Kac_6	59.227	46.435			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4552400	4552400	0	0	0	0	0	0	0	4552400	4552400	0	0	0	0	6558	512	6192	40755	55483	55483	258		1	
CVYYHILR	0	Unmodified	1122.5644	0.56443473	4354	Q9BQ95	ECSIT	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				62.726	53.715	3	0.058003	28546	160513_QHF_FH_JSI9Kac_6	17.24	6.9313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4497700	4497700	0	4497700	4497700	0	0	0	0	0	0	0	0	0	0	6559	4354	6193	40756	55484	55484			1	
CWAGSLWLFK	1	Unmodified	1266.6219	0.62194961	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.337	81.042	2	2.2328E-56	46761	160513_QHF_FH_JSI10Kac_6	224.24	200.81			1.0077	1.0768	22.464	4	1	Median	1.2138	1.0459	NaN	1	1	Median	0.95469	1.1227	NaN	1	0	Median	0.74089	0.69968	NaN	1	0	Median	1.0636	1.1085	NaN	1	0	Median	672260000	336070000	336190000	108660000	43049000	65610000	230720000	125970000	104750000	221080000	116860000	104220000	111810000	50196000	61613000	6560	4355	6194	40757;40758;40759;40760	55485;55486;55487;55488;55489;55490	55490			6	
CWALGFYPAEITLTWQR	0	Unmodified	2111.0299	0.029866926	1354;2788;1353	P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P03989;Q04826;P30488;P30487;P30485;P30483;P30461;P30508;Q29960;Q07000;P30505;Q9TNN7;Q95604;Q29963;P10321;P01893	HLA-B;HLA-C;HLA-H	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	0	0		By MS/MS			16	0									1		1			96.449	90.729	2	5.9866E-33	52565	160513_QHF_FH_JSI10Kac_6	173.19	152.81			1.1485	1.3575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1485	1.3575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129410000	61747000	67661000	0	0	0	129410000	61747000	67661000	0	0	0	0	0	0	6561	1353;1354;2788	6195	40761	55491	55491			1	
CWALSFYPAEITLTWQR	0	Unmodified	2141.0404	0.040431612	788;967;1352	P10316;P01892;P01891;P30453;P30457;P30459;P16190;P10314;P18462	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain	no	no	0	0	0	0		By MS/MS			16	0									1		1			96.649	90.929	2	5.7378E-70	52743	160513_QHF_FH_JSI10Kac_6	213.73	102.1			1.0794	1.2791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0794	1.2791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100090000	52857000	47236000	0	0	0	100090000	52857000	47236000	0	0	0	0	0	0	6562	967;788;1352	6196	40762	55492	55492			1	
CWIFSCLNVMR	0	Unmodified	1484.6727	0.67268133	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.304	81.585	2	0.0011891	45963	160513_QHF_FH_JSI10Kac_6	95.502	58.39			2.0857	2.493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0857	2.493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43143000	23382000	19762000	0	0	0	43143000	23382000	19762000	0	0	0	0	0	0	6563	2475	6197	40763	55493	55493			1	
CYADTMFSLLGK	1	Unmodified	1404.6418	0.64175835	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			89.655	89.155	2	0.0033334	79173	160511_QHF_FH_JSI10i_2	66.435	36.625			1.9308	2.3961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9308	2.3961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24508000	9289600	15218000	0	0	0	24508000	9289600	15218000	0	0	0	0	0	0	6564	1742	6198	40764	55494	55494			1	
CYEMASHLR	0	Unmodified	1165.5008	0.5008482	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.67		14	2						9	4	6	9	6	27.488	23.483	2;3	1.1875E-15	20306	160511_QHF_FH_JSI10i_2	152.63	115.07			0.32964	0.34779	154.66	23	18	Median	0.42725	0.35463	162.53	3	3	Median	0.27134	0.32162	213.83	5	4	Median	0.31238	0.31066	145.53	9	7	Median	0.92832	0.98204	144.48	6	4	Median	3434000000	2049200000	1384800000	57733000	37217000	20516000	578410000	312600000	265810000	2003700000	1312200000	691490000	794220000	387200000	407020000	6565	876	6199	40765;40766;40767;40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789	55495;55496;55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509;55510;55511;55512;55513;55514;55515;55516;55517;55518;55519	55514			25	
CYEMASHLR	0	Oxidation (M)	1181.4958	0.49576282	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	1	0		By MS/MS	By MS/MS		9	7		2							2		1	3		22.11	18.631	2;3	0.0052608	19677	160511_QHF_FH_JSI11i_2	78.516	69			0.83197	0.91792	35.116	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96904	1.1766	NaN	1	0	Median	0.7143	0.71609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45698000	34505000	11193000	0	0	0	20987000	11249000	9737500	24712000	23256000	1456000	0	0	0	6566	876	6199	40790;40791;40792;40793	55520;55521;55522;55523	55522		422	4	
CYFYLLISK	1	Unmodified	1205.6155	0.61546725	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		85.634	76.669	2	1.242E-05	42112	160513_QHF_FH_JSI9Kac_6	117.04	97.274			1.2275	1.0975	123.41	2	2	Median	3.0965	2.6266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48663	0.45858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	232480000	111480000	121000000	96147000	23038000	73109000	0	0	0	136340000	88443000	47895000	0	0	0	6567	5205	6200	40794;40795;40796	55524;55525;55526	55525			3	
CYGLHAFIVPIR	0	Unmodified	1444.7649	0.76492545	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	2	1	1	77.841	69.435	3	6.0549E-13	38493	160513_QHF_FH_JSI10Kac_6	125.75	118.38			1.0893	1.2242	31.334	4	0	Median	1.8764	1.6341	NaN	1	0	Median	0.87736	1.0338	NaN	1	0	Median	0.86209	0.82381	NaN	1	0	Median	1.3525	1.4496	NaN	1	0	Median	403060000	208960000	194100000	37360000	8692100	28668000	227510000	132910000	94600000	82092000	43382000	38710000	56105000	23978000	32127000	6568	2624	6201	40797;40798;40799;40800;40801	55527;55528;55529;55530;55531;55532;55533	55533			7	
CYMHQKIEGEELRLLLTANDK	2	Unmodified	2560.2778	0.27777812	5815				yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	3	2	103.58	103.48	3;4	0.04575	91197	160511_QHF_FH_JSI11i_2	22.636	14.833	+		1.5471	1.6426	26.725	8	0	Median	1.661	1.4402	NaN	1	0	Median	0.77583	0.95805	7.9595	2	0	Median	1.542	1.5659	7.44	3	0	Plateau	1.5471	1.723	0	2	0	Median	676850000	255250000	421600000	14548000	6203800	8344300	115920000	57527000	58394000	287550000	104840000	182710000	258830000	86682000	172150000	6569	5815	6202	40802;40803;40804;40805;40806;40807;40808;40809	55534;55535	55535			2	
DAAAAKEEAPK	2	Acetyl (K)	1141.5615	0.56151742	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.8	0.4				1	4						1	1	3	27.47	20.1	2	3.5716E-07	9262	160513_QHF_FH_JSI11Kac_2	109.42	81.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14312000	11947000	2365700	0	0	0	3305800	3305800	0	4312400	4312400	0	6694100	4328400	2365700	6570	2101	6203	40810;40811;40812;40813;40814	55536;55537;55538;55539;55540	55536	2211		5	
DAAASASTPAQAPTSDSPVAEDASR	0	Unmodified	2372.0728	0.07279019	1863	P55789	GFER	FAD-linked sulfhydryl oxidase ALR	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	39.61	38.998	2;3	4.1616E-08	35409	160511_QHF_FH_JSI12i_1	72.399	65.75			0.47444	0.50523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47444	0.50523	NaN	1	1	Median	22236000	18265000	3971600	0	0	0	0	0	0	0	0	0	22236000	18265000	3971600	6571	1863	6204	40815;40816	55541;55542	55541			2	
DAAAVGNHVAK	1	Unmodified	1051.5411	0.54105675	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	4.99		7					2			1	2	3	3	12.569	10.043	2	1.441E-14	8191	160511_QHF_FH_JSI11i_2	143.28	106.89			3.3364	3.5406	71.161	4	4	Median	NaN	NaN	NaN	0	0	Median	2.4195	2.9621	NaN	1	1	Median	2.8994	2.7653	60.178	2	2	Median	8.5937	9.7808	NaN	1	1	Median	190000000	60272000	129730000	33261000	0	33261000	64099000	45299000	18800000	55946000	11270000	44676000	36696000	3702800	32993000	6572	2442	6205	40817;40818;40819;40820;40821;40822;40823;40824;40825	55543;55544;55545;55546;55547;55548;55549;55550;55551	55548			9	
DAAAVLVSR	0	Unmodified	900.50288	0.50288033	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				36.34	35.108	2	0.0046791	30824	160511_QHF_FH_JSI9i_1	66.299	38.125			1.3756	1.1211	75.782	2	2	Median	1.3756	1.1211	75.782	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117540000	64332000	53207000	117540000	64332000	53207000	0	0	0	0	0	0	0	0	0	6573	4424	6206	40826;40827	55552;55553	55552			2	
DAADKPR	1	Acetyl (K)	813.39808	0.39808091	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		10.806	3.4493	2	0.028772	4405	160513_QHF_FH_JSI11Kac_3	77.282	33.166			0.044315	0.052208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.044315	0.052208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10707000	10567000	140120	0	0	0	3602000	3461900	140120	7105400	7105400	0	0	0	0	6574	2367	6207	40828;40829	55554;55555	55554			2	
DAAEAIK	1	Unmodified	716.37047	0.37046918	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	11.992	11.502	2	0.011756	9377	160511_QHF_FH_JSI12i_1	60.76	16.068			1.6916	1.4961	21.651	2	1	Median	1.5849	1.2838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8056	1.7437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	967550000	500440000	467100000	410880000	196350000	214530000	0	0	0	556670000	304090000	252580000	0	0	0	6575	576	6208	40830;40831;40832	55556;55557;55558;55559	55557			4	
DAAEAIKK	2	Unmodified	844.46543	0.46543219	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	4.53	6	4	1				2			3	2	6	2	10.872	9.2742	2;3	0.0022271	7256	160511_QHF_FH_JSI11i_2	109.86	53.852			2.2841	2.3282	145.88	12	12	Median	0.78086	0.67688	158.07	3	3	Median	0.60028	0.70889	194.74	2	2	Median	2.2829	2.2853	169.78	5	5	Median	2.7613	2.9508	30.887	2	2	Median	3329500000	1866200000	1463300000	373250000	172880000	200380000	1091700000	693060000	398650000	1231500000	689830000	541710000	633020000	310420000	322600000	6576	576	6209	40833;40834;40835;40836;40837;40838;40839;40840;40841;40842;40843;40844;40845	55560;55561;55562;55563;55564;55565;55566;55567;55568;55569;55570;55571;55572	55571			13	
DAAEFELFFR	0	Unmodified	1243.5873	0.58733824	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	99.952	99.828	2	7.0646E-07	87474	160511_QHF_FH_JSI11i_2	122.13	99.395			1.0594	1.1931	38.612	7	6	Median	1.503	1.2721	58.862	2	2	Median	1.1185	1.3345	7.0128	2	2	Median	0.86512	0.82804	51.652	2	2	Median	1.047	1.1107	NaN	1	0	Median	77157000	35836000	41321000	15478000	6001300	9477200	14283000	6484800	7798600	34340000	16846000	17494000	13054000	6503500	6550800	6577	3167	6210	40846;40847;40848;40849;40850;40851;40852	55573;55574;55575;55576;55577;55578;55579;55580	55577			8	
DAAEQVRK	1	Unmodified	915.47739	0.47739386	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.6869	5.4572	2	0.0047375	3421	160511_QHF_FH_JSI10i_1	76.774	12.017			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6578	4302	6211	40853;40854;40855	55581;55582;55583	55583			3	
DAAFATLVSDR	0	Unmodified	1164.5775	0.57750184	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	63.78	60.588	2	8.4547E-09	55077	160511_QHF_FH_JSI11i_1	118.04	93.885			0.98916	1.0418	38.775	4	1	Median	1.3945	1.1609	NaN	1	0	Median	0.70772	0.82613	61.139	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8956	0.93484	NaN	1	0	Median	395950000	195860000	200090000	116850000	50164000	66685000	153950000	77827000	76127000	0	0	0	125140000	67868000	57274000	6579	4487	6212	40856;40857;40858;40859;40860;40861	55584;55585;55586;55587;55588;55589;55590	55584			7	
DAAFEALGTALK	1	Unmodified	1205.6292	0.62920306	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	75.322	74.749	2	9.9952E-10	67561	160511_QHF_FH_JSI10i_1	120.06	99.541			1.992	1.9165	25.057	5	5	Median	2.1544	1.7746	12.159	2	2	Median	1.1107	1.3079	NaN	1	1	Median	1.9742	1.9165	NaN	1	1	Median	2.5332	2.5858	NaN	1	1	Median	556050000	187930000	368130000	182020000	63243000	118780000	89466000	37343000	52123000	167860000	52382000	115470000	116710000	34959000	81753000	6580	2485	6213	40862;40863;40864;40865;40866;40867;40868	55591;55592;55593;55594;55595;55596;55597	55595			7	
DAAGIAMEAIAFAR	0	Unmodified	1405.7024	0.70238478	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	2	2	2	101.16	101.05	2	3.7021E-31	88726	160511_QHF_FH_JSI11i_2	190.26	164.32			1.0537	1.1555	10.984	4	1	Median	1.3906	1.1646	NaN	1	0	Median	0.94914	1.1465	NaN	1	0	Median	0.97043	0.96222	NaN	1	0	Median	1.1442	1.2446	NaN	1	1	Median	810630000	396140000	414490000	230970000	102350000	128610000	144160000	74974000	69182000	207240000	128160000	79070000	228270000	90650000	137620000	6581	899	6214	40869;40870;40871;40872;40873;40874;40875	55598;55599;55600;55601;55602;55603	55602			6	
DAAGSGDKPGADTGR	1	Unmodified	1373.6171	0.61713482	4051	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	6.4773	6.1429	2;3	0.00047342	4054	160511_QHF_FH_JSI10i_1	51.147	42.747			1.0188	0.94951	28.299	8	3	Median	1.3775	1.1362	31.93	2	1	Median	0.7115	0.84444	17.126	2	0	Median	1.0623	1.0281	55.302	2	2	Median	1.0345	1.0607	16.204	2	0	Median	494550000	235350000	259200000	114170000	52429000	61741000	155840000	72848000	82988000	84069000	35913000	48155000	140480000	74163000	66316000	6582	4051	6215	40876;40877;40878;40879;40880;40881;40882;40883	55604;55605;55606;55607;55608;55609;55610	55607			7	
DAAHLVNQDDPNVLEIWNLVFIQYNR	0	Unmodified	3095.5465	0.54648307	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			99.027	91.6	3	2.1892E-07	51809	160513_QHF_FH_JSI9Kac_6	109.18	85.087			0.93297	0.93263	0.044774	2	1	Median	1.1048	0.93292	NaN	1	1	Median	0.7879	0.93233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	506360000	226180000	280180000	164080000	54969000	109110000	342280000	171210000	171070000	0	0	0	0	0	0	6583	1664	6216	40884;40885	55611;55612	55611			2	
DAAHMLQANK	1	Unmodified	1097.5288	0.52877751	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		21.001	20.248	2	0.0007073	17444	160511_QHF_FH_JSI10i_2	84.743	74.756			0.52489	0.57759	76.868	4	4	Median	0.78536	0.65385	132.1	2	2	Median	0.51082	0.62464	NaN	1	1	Median	0.53934	0.53409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106490000	66738000	39755000	48532000	26513000	22018000	25040000	16519000	8521000	32921000	23705000	9216000	0	0	0	6584	518	6217	40886;40887;40888;40889;40890	55613;55614;55615;55616;55617	55617			5	
DAAITLK	1	Unmodified	730.4225	0.42250475	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.859	27.653	2	0.014343	24556	160511_QHF_FH_JSI11i_1	67.032	25.53			0.28694	0.2734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28694	0.2734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	322650000	265200000	57453000	0	0	0	0	0	0	322650000	265200000	57453000	0	0	0	6585	2261	6218	40891	55618	55618			1	
DAAIYLVTSLASK	1	Unmodified	1350.7395	0.73948179	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.48	10	14	2					2		5	8	9	6	95.996	94.952	2;3	1.6826E-05	86901	160511_QHF_FH_JSI10i_1	84.718	53.339			0.60674	0.6	114.35	27	26	Median	0.58484	0.49499	127.49	5	5	Median	0.44617	0.52424	106.18	7	7	Median	1.6099	1.5682	123.6	9	8	Median	0.822	0.92331	126.99	6	6	Median	1212900000	603270000	609630000	190600000	93680000	96922000	326450000	181310000	145140000	390640000	177780000	212860000	305200000	150490000	154710000	6586	1844	6219	40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919	55619;55620;55621;55622;55623;55624;55625;55626;55627;55628;55629;55630;55631;55632;55633;55634;55635;55636;55637;55638;55639;55640;55641;55642;55643;55644;55645;55646;55647;55648;55649;55650;55651;55652;55653;55654;55655;55656	55638			38	
DAALATALGDK	1	Unmodified	1044.5451	0.54513908	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	1	2	3	48.476	46.704	2	2.4342E-06	41967	160511_QHF_FH_JSI11i_1	118.03	92.094			7.0096	7.2957	270.63	7	7	Median	1.3358	1.0877	283.37	2	2	Median	7.0096	8.4965	NaN	1	1	Median	0.3609	0.34963	429.66	2	2	Median	0.84905	0.88328	325.94	2	2	Median	501220000	237130000	264090000	122010000	52035000	69975000	65432000	8900500	56531000	161640000	91444000	70199000	152130000	84752000	67380000	6587	1180	6220	40920;40921;40922;40923;40924;40925;40926;40927	55657;55658;55659;55660;55661;55662;55663;55664;55665	55657			9	
DAALATALGDKK	2	Unmodified	1172.6401	0.6401021	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.35	4.17	7	11	2				3			5	6	5	7	38.984	37.2	2;3	8.2063E-06	32800	160511_QHF_FH_JSI10i_2	112.51	89.28			9.0694	10.606	293.41	17	17	Median	7.154	6.074	268.61	4	4	Median	9.0694	10.606	357.42	5	5	Median	25.797	25.635	205.96	4	4	Median	1.0638	1.1409	369.35	4	4	Median	1653200000	661330000	991890000	226170000	72303000	153870000	435750000	195640000	240110000	575720000	146320000	429400000	415580000	247070000	168510000	6588	1180	6221	40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948;40949;40950	55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680;55681;55682;55683;55684;55685;55686;55687;55688	55688			23	
DAALAVAEAMADK	1	Unmodified	1274.6177	0.61765209	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	2	3	74.601	74.065	2	2.0537E-06	67569	160511_QHF_FH_JSI12i_1	120.55	102.33			1.1363	1.1744	106.36	8	8	Median	5.7228	4.7111	NaN	1	1	Median	0.67929	0.79771	136.14	2	2	Median	0.87004	0.85153	106.97	2	2	Median	2.1598	2.2117	110.62	3	3	Plateau	658150000	310590000	347560000	71434000	31238000	40196000	163410000	96508000	66904000	199560000	94074000	105480000	223740000	88766000	134980000	6589	1578	6222	40951;40952;40953;40954;40955;40956;40957;40958	55689;55690;55691;55692;55693;55694;55695;55696	55693			8	
DAALGPIR	0	Unmodified	811.4552	0.45520186	5244	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	32.715	32.476	2	0.0073349	29140	160511_QHF_FH_JSI12i_1	58.604	34.632			1.0706	1.0567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0706	1.0567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27907000	11475000	16432000	0	0	0	0	0	0	27907000	11475000	16432000	0	0	0	6590	5244	6223	40959;40960	55697;55698	55698			2	
DAALIVITLPIGRK	1	Unmodified	1478.9184	0.91844921	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	94.136	94.13	3	0.03692	81613	160511_QHF_FH_JSI12i_3	30.998	20.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2501400	2501400	0	0	0	0	0	0	0	0	0	0	2501400	2501400	0	6591	1841	6224	40961	55699	55699			1	
DAALLEAAR	0	Unmodified	928.49779	0.49779495	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	4									2			2	43.058	42.133	2	0.00054208	38038	160511_QHF_FH_JSI12i_1	88.948	60.436			0.28486	0.26302	109.35	4	4	Median	0.2276	0.18976	116.46	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3887	0.39966	129.46	2	2	Median	348230000	248210000	100020000	157720000	116990000	40736000	0	0	0	0	0	0	190510000	131230000	59280000	6592	4620	6225	40962;40963;40964;40965	55700;55701;55702;55703	55700			4	
DAANLLNDALAIR	0	Unmodified	1368.7361	0.73612775	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	93.48	93.127	2	5.8897E-24	84519	160511_QHF_FH_JSI10i_1	183.33	136.14			1.1156	1.0734	16.532	5	0	Median	1.451	1.235	12.564	2	0	Median	0.86252	1.0022	NaN	1	0	Median	1.1156	1.0734	NaN	1	0	Median	0.80856	0.85923	NaN	1	0	Median	184460000	75369000	109090000	58912000	19879000	39033000	49299000	22266000	27032000	33318000	12869000	20449000	42929000	20355000	22574000	6593	2258	6226	40966;40967;40968;40969;40970	55704;55705;55706;55707;55708;55709;55710;55711	55708			8	
DAAPLPRPGAVLK	1	Unmodified	1303.7612	0.76122028	551	O75638	CTAG2	Cancer/testis antigen 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	3	2	1	49.487	48.614	2;3	0.00048616	42912	160511_QHF_FH_JSI11i_3	65.179	56.479			0.84075	0.88749	19.42	8	1	Median	0.88201	0.74182	26.071	2	0	Median	0.83879	1.0332	9.3097	3	1	Plateau	0.86307	0.7966	8.1531	2	0	Median	0.83517	0.88301	NaN	1	0	Median	458780000	225210000	233570000	86793000	45818000	40975000	153850000	79873000	73978000	159530000	71338000	88188000	58610000	28181000	30429000	6594	551	6227	40971;40972;40973;40974;40975;40976;40977;40978	55712;55713;55714;55715;55716;55717;55718;55719;55720;55721	55713			10	
DAASAGLGSIGVK	1	Unmodified	1144.6088	0.60880197	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	50.071	49.129	2	6.0832E-05	44718	160511_QHF_FH_JSI12i_1	107.06	88.744			1.5938	1.4719	46.218	2	0	Median	2.4727	2.0409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0273	1.0616	NaN	1	0	Median	98917000	43776000	55140000	46435000	14300000	32136000	0	0	0	0	0	0	52481000	29476000	23005000	6595	4771	6228	40979;40980	55722;55723	55722			1	
DAASGEVVGK	1	Unmodified	931.46108	0.4610751	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	0					5						2	1	2	17.483	10.358	2	2.0686E-05	5721	160513_QHF_FH_JSI11Kac_2	105.52	69.125			0.54118	0.53656	80.757	5	5	Median	NaN	NaN	NaN	0	0	Median	0.72809	0.83799	118.21	2	2	Median	0.54118	0.53656	NaN	1	1	Median	0.92261	0.97699	98.457	2	2	Median	28153000	15889000	12265000	0	0	0	7824900	4414400	3410500	6938000	3709500	3228500	13390000	7764800	5625500	6596	1787	6229	40981;40982;40983;40984;40985	55724;55725;55726;55727;55728	55724			5	
DAASQEPK	1	Unmodified	844.39266	0.39266118	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.1805	4.8388	2	0.002181	2802	160511_QHF_FH_JSI12i_1	91.069	60.883			1.2757	1.2999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2757	1.2999	NaN	1	1	Median	83221000	37780000	45441000	0	0	0	0	0	0	0	0	0	83221000	37780000	45441000	6597	398	6230	40986	55729	55729			1	
DAASVDK	1	Unmodified	704.33408	0.33408367	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	6				3					1	2	3	3	5.644	3.0465	2	0.003503	1741	160513_QHF_FH_JSI12Kac_2	100.19	45.663			0.90266	0.93803	25.306	9	2	Median	1.2495	1.0305	NaN	1	0	Median	0.96513	1.1493	0.29716	2	0	Median	0.69885	0.69181	34.203	3	2	Median	0.90266	0.93803	18.783	3	0	Plateau	1868200000	980320000	887840000	188840000	88370000	100470000	462870000	253010000	209870000	592500000	306170000	286320000	623940000	332770000	291170000	6598	230	6231	40987;40988;40989;40990;40991;40992;40993;40994;40995	55730;55731;55732;55733;55734;55735;55736;55737	55737			8	
DAASVEK	1	Unmodified	718.34973	0.34973373	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.5	5.5	1				1					1	1			6.7398	2.8243	2	0.010466	2176	160513_QHF_FH_JSI10Kac_2	87.323	32.797			1.8945	1.8785	21.158	2	1	Median	1.9544	1.6174	NaN	1	0	Median	1.8364	2.1816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	552660000	235140000	317520000	540330000	229550000	310770000	12331000	5588600	6742700	0	0	0	0	0	0	6599	4308	6232	40996;40997	55738;55739;55740	55738			3	
DAASVEKVLDQK	2	Acetyl (K)	1343.6933	0.69325988	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	71.534	62.187	2	1.2786E-07	31230	160513_QHF_FH_JSI11Kac_3	106.29	89.659			0.088125	0.084676	276.2	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87186	0.87726	330.64	2	1	Median	0.062769	0.068693	NaN	1	1	Median	9411200	8019600	1391600	0	0	0	1047500	1047500	0	5308100	4041300	1266800	3055600	2930800	124760	6600	4308	6233	40998;40999;41000;41001	55741;55742;55743;55744	55741	3119;3120		4	
DAASVEKVLDQKEHRLDGR	2	Acetyl (K)	2207.1295	0.12945763	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	3		By MS/MS			16	0									1		1			102.31	96.591	3	0.028719	57083	160513_QHF_FH_JSI10Kac_6	39.657	14.459			0.13523	0.15904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13523	0.15904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	230580000	216580000	14006000	0	0	0	230580000	216580000	14006000	0	0	0	0	0	0	6601	4308	6234	41002	55745	55745	3119;3120		1	
DAATIMQPYFTSNGLVTK	1	Unmodified	1955.9663	0.96626362	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	88.701	88.271	2;3	4.1271E-17	80349	160511_QHF_FH_JSI12i_1	164.8	153.11			0.87322	0.91519	13.057	9	2	Median	1.1521	0.967	8.0428	2	0	Median	0.78537	0.93777	3.4479	2	0	Median	0.78003	0.75872	23.411	3	2	Plateau	0.84109	0.871	7.9276	2	0	Median	637780000	363460000	274330000	123400000	66279000	57121000	155850000	93197000	62658000	230010000	129730000	100280000	128520000	74250000	54272000	6602	2517	6235	41003;41004;41005;41006;41007;41008;41009;41010;41011	55746;55747;55748;55749;55750;55751;55752;55753;55754;55755;55756;55757;55758;55759;55760;55761;55762;55763;55764	55754			19	
DAAYYSYQNR	0	Unmodified	1249.5364	0.53636531	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		26.293	26.117	2	0.007173	23025	160511_QHF_FH_JSI11i_1	53.327	37.665			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6603	3886	6236	41012	55765	55765			1	
DACVISSDFHER	0	Unmodified	1434.6198	0.61977736	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	39.212	37.853	2	0.0023394	32353	160511_QHF_FH_JSI12i_2	59.542	52.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6604	4316	6237	41013;41014	55766;55767	55767			2	
DADDAVYELNGK	1	Unmodified	1308.5834	0.58337508	2263;2378	Q08170;Q13247	SRSF4;SRSF6	Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		43.431	43.032	2	3.6415E-05	38860	160511_QHF_FH_JSI11i_1	112.83	94.461			2.6067	2.7871	35.769	2	2	Median	NaN	NaN	NaN	0	0	Median	3.0471	3.5892	NaN	1	1	Median	2.2299	2.1643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	190200000	48860000	141340000	0	0	0	108820000	25433000	83386000	81383000	23427000	57957000	0	0	0	6605	2263;2378	6238	41015;41016	55768;55769	55768			2	
DADKSIIR	1	Acetyl (K)	958.50836	0.50835964	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		39.745	30.671	2	0.013454	17670	160513_QHF_FH_JSI11Kac_3	69.812	31.036			0.54633	0.53257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54633	0.53257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2896500	1857700	1038800	0	0	0	0	0	0	2896500	1857700	1038800	0	0	0	6606	1520	6239	41017	55770	55770	1543		1	
DADLTDTAQTR	0	Unmodified	1205.5524	0.5524093	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.25	4.76	2				6						3	2	3	26.04	19.689	2	1.5202E-07	17874	160511_QHF_FH_JSI10i_1	123.75	100.68			0.70206	0.82836	59.18	7	6	Median	NaN	NaN	NaN	0	0	Median	0.70206	0.82836	48.696	3	2	Median	0.83005	0.76972	99.698	2	2	Median	0.89585	0.96125	74.892	2	2	Median	193140000	106920000	86215000	0	0	0	177430000	99012000	78415000	7133800	3520500	3613300	8577300	4391000	4186300	6607	2460	6240	41018;41019;41020;41021;41022;41023;41024;41025	55771;55772;55773;55774;55775;55776;55777;55778	55774			8	
DADPILISLR	0	Unmodified	1111.6237	0.62372375	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2				2	1	2	77.112	74.222	2	7.378E-05	68733	160511_QHF_FH_JSI11i_1	88.496	61.241			0.8993	1.0612	12.667	4	0	Median	NaN	NaN	NaN	0	0	Median	0.8993	1.0612	3.6201	2	0	Median	1.2299	1.2155	NaN	1	0	Median	0.85861	0.8959	NaN	1	0	Median	243100000	140430000	102670000	0	0	0	63841000	46820000	17021000	103380000	51443000	51941000	75876000	42166000	33710000	6608	4366	6241	41026;41027;41028;41029;41030	55779;55780;55781;55782;55783;55784	55780			6	
DADPILR	0	Unmodified	798.42357	0.42356738	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29	28.407	2	0.01287	25212	160511_QHF_FH_JSI11i_1	68.7	47.154			0.77059	0.86163	8.9373	4	0	Linear	0.82299	0.67629	NaN	1	0	Median	0.71989	0.83927	NaN	1	0	Median	0.79695	0.77584	NaN	1	0	Median	0.7451	0.75309	NaN	1	0	Median	511220000	286690000	224530000	109460000	45874000	63587000	161640000	98011000	63626000	125920000	74599000	51324000	114190000	68204000	45990000	6609	1372	6242	41031;41032;41033;41034	55785;55786;55787;55788;55789;55790	55785			6	
DADSITLFDVQQK	1	Unmodified	1478.7253	0.72528829	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				1	3	2	3	75.809	71.374	2;3	2.0235E-16	34174	160513_QHF_FH_JSI10Kac_3	138.25	120.88			0.88121	0.91753	47.95	8	3	Median	1.4979	1.2311	NaN	1	0	Median	0.78068	0.92503	44.058	3	1	Median	0.93444	0.91009	NaN	1	1	Median	0.831	0.87198	73.831	3	1	Median	233460000	125230000	108240000	47101000	21204000	25897000	61635000	37846000	23789000	58536000	34202000	24334000	66191000	31976000	34215000	6610	1805	6243	41035;41036;41037;41038;41039;41040;41041;41042;41043	55791;55792;55793;55794;55795;55796;55797;55798;55799	55798			9	
DADSQNPDAPEGK	1	Unmodified	1342.5637	0.56370227	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	5.13	4	2		3	4					1	4	3	5	11.067	6.8802	2	1.8565E-66	7079	160511_QHF_FH_JSI11i_1	229.64	221.42			1.0295	1.0221	48.134	13	5	Median	1.0295	0.85276	NaN	1	0	Median	1.1065	1.2781	58.027	4	3	Median	0.94997	0.92049	10.546	3	0	Median	1.1422	1.2114	55.782	5	2	Median	2278400000	1222900000	1055600000	499950000	250950000	249000000	569040000	324500000	244550000	682860000	394120000	288740000	526590000	253290000	273300000	6611	1805	6244	41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054;41055;41056	55800;55801;55802;55803;55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818	55801			19	
DADSQNPDAPEGKR	1	Unmodified	1498.6648	0.6648133	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	By MS/MS				1	0	2									2				8.0881	7.4039	2;3	0.0015312	4996	160511_QHF_FH_JSI9i_1	86.313	59.009			1.2011	0.96216	NaN	1	1	Median	1.2011	0.96216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64454000	10577000	53877000	64454000	10577000	53877000	0	0	0	0	0	0	0	0	0	6612	1805	6245	41057;41058	55819;55820	55819			2	
DADVQNFVSFISK	1	Unmodified	1468.7198	0.71980898	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.696	6	1	1							1	4	2	1	95.45	95.21	2;3	4.6679E-22	86522	160511_QHF_FH_JSI11i_1	199.43	179.13			1.0406	0.99429	30.449	6	3	Median	1.3171	1.0721	NaN	1	0	Median	0.91546	1.083	39.769	3	3	Plateau	0.88361	0.86566	NaN	1	0	Median	0.86872	0.92208	NaN	1	0	Median	2184700000	1095600000	1089100000	284370000	118720000	165660000	1011000000	522460000	488590000	461500000	249630000	211880000	427730000	204760000	222960000	6613	1525	6246	41059;41060;41061;41062;41063;41064;41065;41066	55821;55822;55823;55824;55825;55826;55827;55828;55829;55830;55831;55832;55833;55834;55835	55822			15	
DAEAEGLSGTTLLPK	1	Unmodified	1500.7672	0.7671531	5322	Q9UI14	RABAC1	Prenylated Rab acceptor protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				65.536	64.505	2	0.00017754	57291	160511_QHF_FH_JSI9i_1	91.202	80.615			0.67085	0.56224	NaN	1	0	Median	0.67085	0.56224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66588000	40930000	25658000	66588000	40930000	25658000	0	0	0	0	0	0	0	0	0	6614	5322	6247	41067	55836;55837	55837			2	
DAEALFK	1	Unmodified	792.40177	0.4017693	1853	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	42.931	42.421	2	0.011879	38643	160511_QHF_FH_JSI12i_1	76.035	38.389			0.2133	0.21048	124.02	4	4	Median	NaN	NaN	NaN	0	0	Median	0.1084	0.12486	NaN	1	1	Median	0.18086	0.17237	NaN	1	1	Median	0.6814	0.7111	143.92	2	2	Median	136450000	98053000	38396000	0	0	0	29392000	26418000	2974000	39172000	36149000	3023300	67884000	35486000	32398000	6615	1853	6248	41068;41069;41070;41071	55838;55839;55840;55841	55840			4	
DAEAVQK	1	Unmodified	759.37628	0.37628284	2662	Q15388	TOMM20	Mitochondrial import receptor subunit TOM20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.47	5				4					1	3	2	3	6.5692	3.1754	2	0.0026708	2223	160513_QHF_FH_JSI11Kac_2	94.407	13.111			0.66233	0.69795	118.78	9	7	Median	0.58275	0.47877	NaN	1	0	Median	3.2008	3.8007	149.48	3	3	Median	1.0247	0.99018	174.44	2	2	Median	1.2881	1.3622	109.88	3	2	Plateau	2559700000	1194800000	1364900000	716080000	510180000	205900000	470230000	165060000	305170000	498810000	165800000	333010000	874620000	353760000	520860000	6616	2662	6249	41072;41073;41074;41075;41076;41077;41078;41079;41080	55842;55843;55844;55845;55846;55847;55848;55849;55850	55843			9	
DAEDAMDAMDGAVLDGR	0	Unmodified	1750.7138	0.71381368	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									5	2	2	2	74.314	73.771	2;3	1.4587E-116	67060	160511_QHF_FH_JSI12i_1	272.5	264.77			0.94362	0.90719	5.523	9	2	Median	1.0179	0.83998	5.7594	3	2	Median	0.77294	0.90947	0.35449	2	0	Median	0.96694	0.94504	4.4811	2	0	Median	0.81777	0.85439	3.449	2	0	Median	2368100000	1212700000	1155400000	396660000	167420000	229240000	694660000	408560000	286100000	617490000	274470000	343020000	659330000	362270000	297060000	6617	2165	6250	41081;41082;41083;41084;41085;41086;41087;41088;41089;41090;41091	55851;55852;55853;55854;55855;55856;55857;55858;55859;55860;55861;55862;55863;55864;55865;55866;55867;55868;55869;55870	55856			20	
DAEDAMDAMDGAVLDGR	0	Oxidation (M)	1766.7087	0.7087283	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.602	57.208	2	4.213E-07	51324	160511_QHF_FH_JSI12i_1	98.592	91.894			1.3673	1.5333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3673	1.5333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18319000	5742400	12577000	0	0	0	18319000	5742400	12577000	0	0	0	0	0	0	6618	2165	6250	41092;41093;41094	55871;55872;55873	55872		1814	3	
DAEDWFFSK	1	Unmodified	1143.4873	0.48728985	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	77.302	76.727	2	3.8499E-08	70069	160511_QHF_FH_JSI12i_1	146.81	131.37		+	0.91672	0.82787	20.093	7	0	Median	0.83768	0.70457	10.484	2	0	Median	0.65689	0.78252	7.9678	2	0	Median	1.0305	1.0192	10.89	2	0	Median	1.0515	1.0942	NaN	1	0	Median	697600000	360640000	336960000	110040000	64498000	45546000	230430000	117090000	113350000	207720000	107800000	99928000	149400000	71261000	78141000	6619	65	6251	41095;41096;41097;41098;41099;41100;41101	55874;55875;55876;55877;55878;55879;55880;55881;55882;55883;55884;55885;55886;55887;55888;55889;55890	55881			17	
DAEEEESELGYIPK	1	Unmodified	1607.7203	0.72026249	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	58.482	57.834	2	2.4276E-07	52557	160511_QHF_FH_JSI12i_1	93.345	79.918			1.1704	1.0878	36.453	4	3	Median	1.4963	1.2404	NaN	1	1	Median	1.3929	1.6382	NaN	1	1	Median	0.98346	0.95401	NaN	1	0	Median	0.65243	0.69803	NaN	1	1	Median	124650000	65061000	59589000	23864000	9650800	14214000	28531000	12036000	16495000	34971000	21628000	13343000	37285000	21746000	15539000	6620	1676	6252	41102;41103;41104;41105;41106	55891;55892;55893;55894;55895	55893			5	
DAEEEGGDQAGQNIRK	1	Unmodified	1715.7711	0.77106928	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	13.023	12.502	2;3	0.00022333	10154	160511_QHF_FH_JSI10i_1	73.834	59.481			0.7719	0.85673	44.018	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52632	0.62757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1321	1.1696	NaN	1	0	Median	108300000	55762000	52541000	12289000	0	12289000	44457000	32792000	11664000	0	0	0	51557000	22970000	28588000	6621	3861	6253	41107;41108;41109	55896;55897;55898	55897			3	
DAEFYEHR	0	Unmodified	1065.4516	0.45157304	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		20.025	19.716	2	0.014666	16624	160511_QHF_FH_JSI9i_2	50.04	40.524			0.15432	0.15137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15432	0.15137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11445000	8821500	2623700	0	0	0	0	0	0	11445000	8821500	2623700	0	0	0	6622	678	6254	41110;41111	55899;55900	55899			2	
DAEFYEHRK	1	Unmodified	1193.5465	0.54653606	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	13.695	13.768	3	0.010606	10696	160511_QHF_FH_JSI12i_3	44.425	31.928			0.4473	0.4657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4473	0.4657	NaN	1	1	Median	40327000	26314000	14013000	0	0	0	0	0	0	0	0	0	40327000	26314000	14013000	6623	678	6255	41112	55901	55901			1	
DAEGILEDLQSYR	0	Unmodified	1507.7155	0.71545188	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	2	3	91.432	90.972	2	4.9265E-53	79925	160511_QHF_FH_JSI11i_2	220.1	194.97			1.0619	0.96531	21.429	10	4	Median	1.1458	0.93386	6.3247	2	0	Median	1.0858	1.2604	36.263	3	2	Median	0.96754	0.96678	8.3457	2	0	Median	0.85708	0.95418	21.661	3	2	Median	935720000	477100000	458610000	98204000	49298000	48906000	337130000	166860000	170270000	221960000	106380000	115580000	278420000	154560000	123850000	6624	5015	6256	41113;41114;41115;41116;41117;41118;41119;41120;41121;41122;41123	55902;55903;55904;55905;55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917	55914			16	
DAEILRK	1	Unmodified	843.48142	0.48141661	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		3									2	1		17.933	17.341	2	0.021104	14752	160511_QHF_FH_JSI10i_2	77.741	12.069			0.73075	0.81586	315.07	2	2	Median	NaN	NaN	NaN	0	0	Median	6.133	7.5716	NaN	1	1	Median	0.087069	0.087912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145410000	112910000	32507000	0	0	0	74791000	47352000	27439000	70623000	65555000	5067600	0	0	0	6625	1170	6257	41124;41125;41126	55918;55919;55920	55920			3	
DAEKPVLFFER	1	Unmodified	1349.698	0.69795133	1295	P27707	DCK	Deoxycytidine kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	64.474	63.825	3	0.00067132	54816	160511_QHF_FH_JSI12i_3	73.927	63.739			1.2609	1.1895	24.349	4	3	Median	1.3149	1.1318	NaN	1	1	Median	0.68158	0.835	NaN	1	0	Median	1.2091	1.2501	NaN	1	1	Median	1.4892	1.4932	NaN	1	1	Median	133480000	60663000	72814000	24626000	11019000	13608000	31622000	17313000	14309000	35128000	17418000	17710000	42099000	14913000	27187000	6626	1295	6258	41127;41128;41129;41130	55921;55922;55923;55924;55925	55925			5	
DAEKYAK	2	Acetyl (K)	865.41815	0.41814765	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.5	0.5					1	1					1	1		17.296	9.9696	2	0.0033863	7445	160513_QHF_FH_JSI11Kac_3	95.352	32.694			8.7415	8.4664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.7415	8.4664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12732000	699560	12032000	0	0	0	2931200	0	2931200	9800500	699560	9101000	0	0	0	6627	2328	6259	41131;41132	55926;55927	55926	2421		2	
DAELIAEAK	1	Unmodified	958.49713	0.49712625	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	38.585	37.675	2	0.013949	33272	160511_QHF_FH_JSI9i_1	55.908	18.933			0.20641	0.19219	2.2098	2	2	Median	0.23933	0.19522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17801	0.18921	NaN	1	1	Median	46459000	37629000	8829500	24305000	19789000	4515700	0	0	0	0	0	0	22154000	17841000	4313800	6628	1003	6260	41133;41134	55928;55929	55929			2	
DAEMPATEK	1	Unmodified	990.43281	0.43281144	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	16.206	15.737	2	8.7366E-05	13253	160511_QHF_FH_JSI11i_1	94.85	70.647			1.0563	1.0859	62.484	4	3	Median	2.7061	2.2616	NaN	1	1	Median	0.47622	0.55447	NaN	1	1	Median	0.81404	0.803	NaN	1	0	Median	1.3706	1.4684	NaN	1	1	Median	927230000	504760000	422470000	207980000	82472000	125510000	240750000	147540000	93206000	195520000	113690000	81833000	282990000	161060000	121930000	6629	1192	6261	41135;41136;41137;41138;41139	55930;55931;55932;55933;55934	55930			5	
DAEMPATEK	1	Oxidation (M)	1006.4277	0.42772606	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	12	0					2							1	1	8.3154	1.0649	2	0.0054167	2699	160513_QHF_FH_JSI11Kac_2	61.999	51.585			1.0438	1.0475	8.6619	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0635	0.98527	NaN	1	0	Median	1.0245	1.1137	NaN	1	0	Median	6821400	3113800	3707600	0	0	0	0	0	0	4092700	1939400	2153400	2728700	1174400	1554200	6630	1192	6261	41140;41141	55935	55935		814	1	
DAENHEAQLK	1	Unmodified	1153.5364	0.53636531	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.6	8	2				1	1			2	4	3	3	8.9827	7.4302	2;3	2.2596E-08	6098	160511_QHF_FH_JSI12i_1	126.31	110.11			0.97317	0.94356	33.574	12	2	Median	1.1745	0.96639	10.052	2	0	Median	0.77947	0.93722	26.06	4	0	Median	0.94338	0.91504	50.916	3	1	Plateau	0.66429	0.70173	39.013	3	1	Plateau	5421600000	2555200000	2866400000	1097000000	507390000	589620000	1719900000	748380000	971570000	1384800000	747190000	637630000	1219800000	552280000	667560000	6631	5497	6262	41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153	55936;55937;55938;55939;55940;55941;55942;55943;55944;55945;55946;55947;55948;55949;55950	55939			15	
DAESIHQYLLQR	0	Unmodified	1471.7419	0.74194141	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				53.344	52.306	2	0.0074173	45911	160511_QHF_FH_JSI9i_2	50.978	34.971			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6632	1862	6263	41154	55951	55951			1	
DAETDGPEK	1	Unmodified	960.40362	0.4036198	3692	Q8TB72	PUM2	Pumilio homolog 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.3051	6.194	2	0.0080567	4015	160511_QHF_FH_JSI11i_1	53.493	38.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6633	3692	6264	41155	55952	55952			1	
DAFADAVQR	0	Unmodified	991.47231	0.47230849	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	37.118	32.236	2	1.2899E-05	29294	160511_QHF_FH_JSI11i_1	110.22	28.576			1.0722	1.1121	5.0469	8	1	Median	1.4086	1.1668	NaN	1	0	Median	0.90979	1.0778	2.9691	2	0	Median	1.1501	1.1237	6.7957	3	1	Median	1.0588	1.1228	4.9704	2	0	Median	2530500000	1269500000	1261000000	502690000	242500000	260190000	705840000	417150000	288700000	696170000	320370000	375800000	625810000	289440000	336360000	6634	3911	6265	41156;41157;41158;41159;41160;41161;41162;41163	55953;55954;55955;55956;55957;55958;55959;55960;55961;55962;55963;55964;55965	55954			13	
DAFALAK	1	Unmodified	734.39629	0.39629	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	3.74	7	1				1				2	1	3	3	39.816	38.125	2	0.0055024	34386	160511_QHF_FH_JSI10i_1	99.919	22.171			0.48496	0.4962	88.653	8	8	Median	1.166	0.97067	133.5	2	2	Median	0.33893	0.39304	NaN	1	1	Median	1.1315	1.0957	123.66	2	2	Median	0.49817	0.53871	84.228	3	3	Median	1808100000	861480000	946590000	406780000	175450000	231330000	309880000	140740000	169140000	557010000	249850000	307160000	534400000	295430000	238970000	6635	1131	6266	41164;41165;41166;41167;41168;41169;41170;41171;41172	55966;55967;55968;55969;55970;55971;55972;55973;55974;55975;55976;55977;55978	55973			13	
DAFDRNPELQNLLLDDFFK	1	Unmodified	2309.1328	0.13281167	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	102.04	101.92	3	1.7425E-24	89681	160511_QHF_FH_JSI11i_2	170.38	139.72			0.81786	0.88686	34.273	5	2	Linear	NaN	NaN	NaN	0	0	Median	0.48979	0.59283	42.541	2	1	Median	0.90569	0.91553	NaN	1	0	Median	0.59792	0.66632	40.252	2	1	Median	5878400000	3485200000	2393100000	0	0	0	2190700000	1422200000	768550000	1541000000	849400000	691600000	2146700000	1213700000	933010000	6636	1764	6267	41173;41174;41175;41176;41177	55979;55980;55981;55982;55983	55981			5	
DAFDTLFDHAPDK	1	Unmodified	1490.6678	0.66777341	5028	Q9NVD7;Q9HBI1	PARVA;PARVB	Alpha-parvin;Beta-parvin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								1	3	3	4	70.615	70.007	2;3	3.2401E-06	63572	160511_QHF_FH_JSI11i_1	122.51	102.21			1.2189	1.0788	36.943	10	4	Median	1.3442	1.0963	NaN	1	0	Median	1.2921	1.5663	47.177	3	1	Plateau	1.3851	1.3594	28.198	3	1	Median	0.95605	1.0055	50.105	3	2	Median	385750000	170600000	215150000	16165000	5323600	10841000	132360000	56148000	76208000	129800000	46093000	83707000	107430000	63041000	44393000	6637	5028	6268	41178;41179;41180;41181;41182;41183;41184;41185;41186;41187;41188	55984;55985;55986;55987;55988;55989;55990;55991;55992	55985			9	
DAFHIISYFLFQVLDQSLTK	1	Unmodified	2384.2416	0.24163384	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.59	99.872	3	7.8553E-26	59167	160513_QHF_FH_JSI10Kac_6	152.18	134.12			0.7269	0.8528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7269	0.8528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	235720000	135690000	100030000	0	0	0	235720000	135690000	100030000	0	0	0	0	0	0	6638	3271	6269	41189	55993;55994	55994			2	
DAFITAICK	1	Unmodified	1037.5216	0.52156686	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.679	20.68	2	0.042023	16837	160511_QHF_FH_JSI12i_3	37.558	1.1632			1.0894	1.0661	23.413	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95047	0.90344	NaN	1	0	Median	1.2486	1.258	NaN	1	0	Median	111420000	57443000	53977000	0	0	0	0	0	0	29467000	15666000	13801000	81953000	41777000	40176000	6639	3262	6270	41190;41191	55995	55995			1	
DAFLGSFLYEYSR	0	Unmodified	1566.7355	0.73545904	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	1	2	2	95.027	89.424	2	5.0666E-32	44697	160513_QHF_FH_JSI12Kac_6	184.88	160.53		+	0.83535	0.83521	33.917	6	2	Median	1.3371	1.1215	NaN	1	0	Median	1.2539	1.4614	NaN	1	0	Median	0.83535	0.82154	27.85	2	1	Median	0.6091	0.65964	7.857	2	1	Median	1367800000	688700000	679060000	181030000	59554000	121480000	194490000	90731000	103760000	616860000	307770000	309090000	375370000	230640000	144730000	6640	50	6271	41192;41193;41194;41195;41196;41197	55996;55997;55998;55999;56000;56001;56002	56001			7	
DAFLVFR	0	Unmodified	866.46504	0.46503826	5718;5719	Q9Y6D5;Q9Y6D6	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.25		7						4		2	3	3	3	75.756	71.389	2	0.01067	63674	160511_QHF_FH_JSI11i_2	79.939	64.718			0.85035	0.91478	64.387	11	7	Median	0.83531	0.70892	36.055	2	1	Median	0.85035	1.0085	82.884	3	2	Median	0.83854	0.81098	44.456	3	2	Median	0.96531	1.0554	96.597	3	2	Median	179420000	92135000	87283000	16195000	8637600	7557800	47175000	23590000	23585000	62648000	32911000	29736000	53400000	26997000	26404000	6641	5718;5719	6272	41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208	56003;56004;56005;56006;56007;56008;56009;56010;56011;56012;56013	56007			11	
DAFPEAIIVK	1	Unmodified	1101.607	0.60701105	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	73.62	72.703	2	0.00033689	66371	160511_QHF_FH_JSI12i_1	87.308	66.683			1.2969	1.0523	NaN	1	1	Median	1.2969	1.0523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18582000	9590700	8990900	18582000	9590700	8990900	0	0	0	0	0	0	0	0	0	6642	2767	6273	41209;41210;41211;41212	56014;56015;56016;56017	56014			4	
DAFPEAIIVKPSDIFGR	1	Unmodified	1873.9938	0.993799	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.53	100.55	3	0.00048902	87088	160511_QHF_FH_JSI12i_3	65.716	55.231			0.45554	0.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45554	0.4605	NaN	1	1	Median	60097000	47624000	12473000	0	0	0	0	0	0	0	0	0	60097000	47624000	12473000	6643	2767	6274	41213	56018	56018			1	
DAFPPLPEK	1	Unmodified	1012.5229	0.52294707	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	56.469	55.71	2	0.0011978	49340	160511_QHF_FH_JSI9i_1	78.334	40.096			1.0284	0.82463	16.183	5	4	Linear	1.1592	0.96379	19.141	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1658	1.103	22.223	2	2	Median	1.0154	1.058	NaN	1	1	Median	254470000	131990000	122490000	92036000	42231000	49805000	0	0	0	87172000	40453000	46719000	75264000	49302000	25962000	6644	2147	6275	41214;41215;41216;41217;41218	56019;56020;56021;56022;56023;56024;56025;56026	56024			8	
DAFPVAGQK	1	Unmodified	931.47633	0.47633123	1831;1830	P54727;P54725	RAD23B;RAD23A	UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.38	4		1			1				2	1	1	2	30.822	28.77	2	3.4361E-05	25624	160511_QHF_FH_JSI10i_1	100.45	66.654			0.98436	1.0666	10.436	6	1	Median	1.3668	1.1282	11.955	2	1	Median	0.94626	1.1183	NaN	1	0	Median	0.91782	0.8942	NaN	1	0	Median	0.98369	1.0666	2.4029	2	0	Median	2995600000	1543500000	1452200000	640900000	282500000	358410000	790340000	400890000	389440000	744300000	387830000	356470000	820090000	472230000	347860000	6645	1831;1830	6276	41219;41220;41221;41222;41223;41224	56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037	56032			11	
DAFQNAYLELGGLGER	0	Unmodified	1751.8479	0.84786304	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								2	3	2	3	92.33	91.927	2;3	9.162E-22	83466	160511_QHF_FH_JSI10i_1	216.88	190.84			1.0858	1.0745	16.397	9	4	Median	1.1947	0.96852	14.686	2	1	Median	0.96481	1.1698	17.499	3	1	Median	1.1318	1.0753	16.48	2	2	Median	1.04	1.0784	17.814	2	0	Median	1002000000	475330000	526670000	130550000	54533000	76016000	387820000	203560000	184260000	193240000	77892000	115350000	290390000	139340000	151050000	6646	821	6277	41225;41226;41227;41228;41229;41230;41231;41232;41233;41234	56038;56039;56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051	56046			14	
DAFSLAEGLR	0	Unmodified	1077.5455	0.54547343	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	70.482	69.872	2	4.0864E-05	62065	160511_QHF_FH_JSI9i_1	94.692	77.306			1.2552	1.1302	19.671	6	3	Median	1.4179	1.2048	6.3294	2	1	Median	0.77814	0.92242	NaN	1	0	Median	1.104	1.1006	1.0359	2	1	Median	1.5769	1.664	NaN	1	1	Median	164460000	71962000	92497000	35447000	16059000	19388000	36513000	16054000	20459000	54746000	24473000	30273000	37753000	15375000	22377000	6647	5734	6278	41235;41236;41237;41238;41239;41240;41241	56052;56053;56054;56055;56056;56057;56058;56059;56060;56061	56056			10	
DAFVAIVQSVK	1	Unmodified	1175.655	0.65502388	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.54	6	4	1			3	3	4	3	6	6	4	8	78.942	72.965	2	5.8594E-12	8031	160513_QHF_FH_JSI9Kac_3	145.89	116.41			1.0606	1.0393	54.495	22	8	Median	1.2976	1.1082	19.545	5	1	Median	0.82598	0.97277	53.927	6	2	Median	1.0256	1.0064	7.9949	3	0	Median	1.0123	1.1152	81.185	8	5	Median	2031600000	1015000000	1016600000	338750000	151820000	186930000	733140000	365930000	367210000	458050000	227350000	230700000	501690000	269920000	231770000	6648	891	6279	41242;41243;41244;41245;41246;41247;41248;41249;41250;41251;41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264;41265	56062;56063;56064;56065;56066;56067;56068;56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088;56089;56090;56091;56092;56093;56094;56095;56096;56097;56098;56099;56100;56101	56079			40	
DAFVYAIK	1	Unmodified	925.49092	0.49091866	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.45	8	2					5	2		4	4	4	5	60.998	56.115	2	0.00070315	30328	160513_QHF_FH_JSI10Kac_4	94.407	41.724			0.93006	0.90818	84.759	17	16	Median	1.0215	0.85799	102.13	4	4	Median	0.63343	0.75059	70.517	4	4	Median	0.98443	0.95021	55.92	4	3	Median	0.51391	0.54633	119.24	5	5	Median	1175000000	550020000	625010000	245520000	104450000	141080000	253660000	133290000	120380000	377060000	157590000	219470000	298770000	154700000	144080000	6649	4874	6280	41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280;41281;41282	56102;56103;56104;56105;56106;56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120;56121;56122;56123;56124	56111			23	
DAFYSKTK	2	Acetyl (K)	1000.4866	0.48656157	2236	Q05BQ5	MBTD1	MBT domain-containing protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4				1	2	1	3	38.468	29.698	2	0.00055238	16833	160513_QHF_FH_JSI12Kac_3	114.89	88.292			0.93672	1.0255	154.73	5	2	Median	NaN	NaN	NaN	0	0	Median	0.8789	1.0657	NaN	1	0	Median	0.93672	0.92952	NaN	1	0	Median	0.93757	1.0255	218.64	3	2	Median	184250000	96866000	87380000	0	0	0	67397000	34876000	32522000	48595000	22154000	26441000	68254000	39836000	28418000	6650	2236	6281	41283;41284;41285;41286;41287;41288;41289	56125;56126;56127;56128;56129;56130;56131;56132;56133	56129	2340		9	
DAGEGGLSLAIEGPSK	1	Unmodified	1499.7468	0.74675201	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.891	8		3							3	4	2	2	63.796	62.931	2;3	3.7887E-66	57513	160511_QHF_FH_JSI12i_1	238.13	209.41			1.052	1.0131	9.2642	11	5	Median	1.3693	1.1394	8.1458	3	1	Median	0.82909	0.9649	12.233	4	2	Median	1.0849	1.0335	2.8276	2	1	Median	1.0433	1.0746	11.927	2	1	Median	2130700000	1094500000	1036200000	397700000	173820000	223870000	628760000	332730000	296040000	545910000	286710000	259200000	558340000	301280000	257060000	6651	1192	6282	41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300	56134;56135;56136;56137;56138;56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149;56150;56151;56152;56153;56154;56155	56142			22	
DAGEGGLSLAVEGPSK	1	Unmodified	1485.7311	0.73110195	2527	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.275	62.645	2	8.6846E-05	57024	160511_QHF_FH_JSI12i_1	98.942	73.505			0.22697	0.23459	61.652	4	4	Median	0.42222	0.34195	NaN	1	1	Median	0.24818	0.283	NaN	1	1	Median	0.20758	0.19447	NaN	1	1	Median	0.084544	0.085042	NaN	1	1	Median	89527000	72449000	17077000	10693000	7125500	3567600	26388000	21843000	4545100	24276000	19317000	4959600	28169000	24165000	4004800	6652	2527	6283	41301;41302;41303;41304	56156;56157;56158;56159	56157			4	
DAGEGLLAVQITDPEGKPK	2	Unmodified	1937.0106	0.010571271	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	69.67	69.093	2;3	1.6388E-32	62485	160511_QHF_FH_JSI10i_1	196.58	182.13			1.0847	1.0068	21.805	9	0	Median	1.2124	1.003	0.54356	2	0	Median	0.98874	1.1936	36.04	3	0	Median	1.1457	1.1007	8.1414	2	0	Median	0.92616	0.97893	1.0122	2	0	Median	2414000000	1190900000	1223100000	376030000	175450000	200590000	762740000	390250000	372480000	721840000	338500000	383340000	553360000	286670000	266690000	6653	1192	6284	41305;41306;41307;41308;41309;41310;41311;41312;41313	56160;56161;56162;56163;56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177;56178	56173			19	
DAGEGLLAVQITDPEGKPKK	3	Unmodified	2065.1055	0.10553429	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	60.402	60.134	3	7.1808E-09	51919	160511_QHF_FH_JSI12i_3	112.56	109.5			1.1327	1.1396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1327	1.1396	NaN	1	0	Median	52170000	21392000	30778000	0	0	0	0	0	0	0	0	0	52170000	21392000	30778000	6654	1192	6285	41314	56179	56179			1	
DAGEGLLAVQITDQEGKPK	2	Unmodified	1968.0164	0.016384931	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	65.001	64.446	2;3	2.5406E-18	58834	160511_QHF_FH_JSI12i_1	138.46	122.69			0.94607	0.9222	20.179	7	2	Median	1.0663	0.90227	NaN	1	0	Median	0.60867	0.72341	34.336	2	1	Median	0.84746	0.829	16.383	2	1	Median	0.95743	0.98188	3.4967	2	0	Median	512180000	263780000	248390000	66068000	33959000	32109000	164610000	100030000	64588000	130610000	63713000	66893000	150890000	66083000	84805000	6655	512	6286	41315;41316;41317;41318;41319;41320;41321	56180;56181;56182;56183;56184;56185;56186	56185			7	
DAGFSSPDGSDPK	1	Unmodified	1278.5364	0.53642488	3682	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.754	23.207	2	0.0021409	20425	160511_QHF_FH_JSI10i_1	57.785	46.955			1.0225	0.93393	24.63	4	1	Median	1.1778	0.96144	NaN	1	0	Median	1.1939	1.3628	NaN	1	0	Median	0.79314	0.75638	NaN	1	1	Median	0.88779	0.9072	NaN	1	0	Median	109550000	57701000	51849000	21729000	9277500	12451000	26442000	14179000	12263000	29837000	15937000	13900000	31542000	18307000	13235000	6656	3682	6287	41322;41323;41324;41325	56187;56188;56189	56188			3	
DAGGMVIDMK	1	Unmodified	1035.4729	0.47290211	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	50.035	49.357	2	0.00038059	43797	160511_QHF_FH_JSI9i_1	76.345	59.569			1.1922	1.2088	71.938	4	1	Median	5.7874	4.6468	NaN	1	0	Median	0.82625	0.98379	NaN	1	0	Median	1.1288	1.088	NaN	1	0	Median	1.2591	1.343	NaN	1	1	Median	258990000	128720000	130270000	41628000	7916000	33712000	76696000	49461000	27236000	79906000	43438000	36467000	60763000	27904000	32859000	6657	1443	6288	41326;41327;41328;41329;41330	56190;56191;56192;56193;56194	56194			5	
DAGHPLYPFNDPY	0	Unmodified	1504.6623	0.6622941	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		73.778	73.187	2	0.010125	66342	160511_QHF_FH_JSI10i_1	57.267	51.487			1.0578	0.95353	7.168	4	4	Median	1.2381	1.0241	7.3039	2	2	Median	0.79313	0.91912	NaN	1	1	Median	0.95022	0.93487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	732170000	383000000	349170000	295790000	139220000	156570000	199640000	118060000	81578000	236730000	125710000	111020000	0	0	0	6658	1054	6289	41331;41332;41333;41334	56195;56196;56197;56198	56196			4	
DAGIALLSITHRPSLWK	1	Unmodified	1877.0523	0.052316927	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			82.203	75.599	3;4	9.5843E-33	42115	160513_QHF_FH_JSI10Kac_6	127.3	106.06			0.96094	1.0649	30.116	3	1	Median	1.2459	1.0649	NaN	1	1	Median	0.73475	0.86069	38.882	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	428380000	220960000	207430000	100590000	38792000	61793000	327800000	182160000	145630000	0	0	0	0	0	0	6659	1406	6290	41335;41336;41337	56199;56200;56201;56202	56200			4	
DAGIEPGPDTYLALLNAYAEK	1	Unmodified	2220.095	0.095029182	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	102.02	101.91	2;3	1.0057E-57	92657	160511_QHF_FH_JSI11i_1	223.26	207.44			0.97295	1.0069	6.9175	8	0	Median	1.1643	0.96447	15.685	2	0	Median	0.8603	1.0211	0.59068	2	0	Median	0.9906	0.97484	3.193	2	0	Median	0.95589	1.0116	5.6682	2	0	Median	2528000000	1300600000	1227400000	522460000	253880000	268580000	637920000	337480000	300440000	790430000	415810000	374620000	577210000	293460000	283740000	6660	1544	6291	41338;41339;41340;41341;41342;41343;41344;41345	56203;56204;56205;56206;56207;56208;56209;56210;56211;56212;56213;56214;56215;56216	56204			14	
DAGIYTCIATNR	0	Unmodified	1353.6347	0.63469914	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			48.831	48.407	2	0.047174	43599	160511_QHF_FH_JSI10i_1	44.564	32.517			0.46027	0.52057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46027	0.52057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30023000	22213000	7809200	0	0	0	30023000	22213000	7809200	0	0	0	0	0	0	6661	3805	6292	41346	56217	56217			1	
DAGLAVR	0	Unmodified	700.38679	0.38678794	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	17.566	17.082	2	0.0033218	14378	160511_QHF_FH_JSI11i_1	105.27	50.504			0.85777	0.77706	118.31	8	7	Median	0.87105	0.70967	76.1	2	2	Median	0.64272	0.75198	115.41	2	2	Median	2.4865	2.4375	224.95	2	1	Median	0.86609	0.92364	91.947	2	2	Median	1943800000	852180000	1091600000	556730000	234930000	321800000	495150000	274870000	220280000	378530000	101900000	276630000	513370000	240480000	272900000	6662	1381	6293	41347;41348;41349;41350;41351;41352;41353;41354	56218;56219;56220;56221;56222;56223;56224;56225	56218			8	
DAGLWHGMFANVMNK	1	Unmodified	1689.7756	0.77556649	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	88.714	88.121	3	2.7314E-07	76339	160511_QHF_FH_JSI12i_3	134.61	117.13			1.1422	1.2505	46.159	4	1	Median	2.4279	2.0795	NaN	1	1	Median	1.3681	1.5977	NaN	1	0	Median	0.8346	0.75068	NaN	1	0	Median	0.95361	0.97869	NaN	1	0	Median	150870000	81057000	69814000	9028200	3012300	6015900	9934400	4028300	5906100	33816000	17535000	16280000	98093000	56481000	41611000	6663	5202	6294	41355;41356;41357;41358;41359	56226;56227;56228;56229;56230;56231;56232;56233;56234	56232			9	
DAGMQLQGYR	0	Unmodified	1137.5237	0.52369213	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.06	4					3	4			1	4	3	3	40.466	34.481	2	3.0485E-19	31442	160511_QHF_FH_JSI11i_1	179.21	150.06			0.84288	0.93744	16.345	10	1	Median	1.1044	0.8968	NaN	1	0	Median	0.77876	0.93657	4.9933	3	1	Median	1.1157	1.067	13.928	3	0	Median	0.66127	0.70161	14.577	3	0	Plateau	3473600000	1801800000	1671800000	640010000	269410000	370600000	944070000	556380000	387690000	1054600000	532210000	522350000	835000000	443800000	391200000	6664	773	6295	41360;41361;41362;41363;41364;41365;41366;41367;41368;41369;41370	56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251	56236			17	
DAGMQLQGYR	0	Oxidation (M)	1153.5186	0.51860675	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		27.306	26.757	2	0.00010102	19805	160511_QHF_FH_JSI10i_1	107.29	83.771			0.68524	3.0706	84.33	3	3	Plateau	3.7552	3.0706	NaN	1	1	Median	0.67386	0.78679	NaN	1	1	Median	0.68524	0.65648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	205720000	76857000	128870000	101240000	19964000	81276000	56896000	30302000	26595000	47587000	26592000	20995000	0	0	0	6665	773	6295	41371;41372;41373	56252;56253;56254	56253		279	3	
DAGNFDQNK	1	Unmodified	1007.4308	0.4308376	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	5.2	5				1	1				1	1	2	3	12.653	9.9509	2	1.5884E-05	8985	160511_QHF_FH_JSI12i_1	121.85	104.29			0.47307	0.47586	84.312	6	6	Median	1.0805	0.8868	NaN	1	1	Median	1.9571	2.3251	NaN	1	1	Median	0.4067	0.39433	54.008	2	2	Median	0.28987	0.31294	31.843	2	2	Median	630760000	323490000	307270000	138840000	62931000	75907000	176960000	80542000	96413000	146840000	81573000	65272000	168120000	98447000	69678000	6666	3216	6296	41374;41375;41376;41377;41378;41379;41380	56255;56256;56257;56258;56259;56260;56261	56256			7	
DAGQISGLNVLR	0	Unmodified	1241.6728	0.67279921	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.04	10	1	3		3	5	3	3		4	10	6	8	68.353	63.657	2;3	5.1017E-78	58028	160511_QHF_FH_JSI11i_1	243.65	212.42			0.94486	1.0043	58.379	23	7	Median	1.2845	1.075	63.837	3	1	Median	0.87745	1.0133	29.444	8	2	Median	1.0647	1.0362	29.025	5	2	Median	0.89436	0.91365	93.076	7	2	Median	12282000000	7023200000	5258900000	2343200000	1100600000	1242600000	2645600000	1570200000	1075400000	2653200000	1319200000	1334100000	4640100000	3033300000	1606800000	6667	1480	6297	41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403;41404;41405;41406;41407;41408	56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274;56275;56276;56277;56278;56279;56280;56281;56282;56283;56284;56285;56286;56287;56288;56289;56290;56291;56292;56293;56294;56295;56296;56297;56298;56299;56300;56301;56302;56303;56304	56263			43	
DAGTIAGLNVLR	0	Unmodified	1198.667	0.66698555	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	5.99	9	5	5		2	6	5	4		9	9	8	10	71.739	66.657	2;3	1.2454E-64	64768	160511_QHF_FH_JSI12i_1	226.59	176.55			0.8889	0.95275	47.175	33	7	Median	1.1793	0.92057	54.061	8	1	Median	0.77647	0.91926	15.815	8	2	Median	0.97653	0.98984	49.775	7	1	Median	0.90767	0.9668	60.353	10	3	Median	23639000000	10710000000	12929000000	5951500000	2336200000	3615300000	5986400000	3125600000	2860800000	6060700000	2763500000	3297200000	5640300000	2484700000	3155600000	6668	985	6298	41409;41410;41411;41412;41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425;41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443;41444	56305;56306;56307;56308;56309;56310;56311;56312;56313;56314;56315;56316;56317;56318;56319;56320;56321;56322;56323;56324;56325;56326;56327;56328;56329;56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341;56342;56343;56344;56345;56346;56347;56348;56349;56350;56351;56352;56353;56354;56355;56356;56357;56358;56359;56360;56361;56362	56315			58	
DAGTIAGLNVLRIINEPTAAAIAYGLDK	1	Unmodified	2839.5444	0.5443578	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	102.42	102.43	3	3.4938E-57	89194	160511_QHF_FH_JSI12i_3	227.59	217.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109860000	109860000	0	0	0	0	0	0	0	0	0	0	109860000	109860000	0	6669	985	6299	41445	56363	56363			1	
DAGTIAGLNVMR	0	Oxidation (M)	1232.6183	0.6183208	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	5.48	4		1		3	4	4			2	6	4	4	54.771	47.592	2	3.9791E-19	25654	160513_QHF_FH_JSI11Kac_3	153.97	106.15			0.95584	1.0509	42.056	14	2	Median	0.77464	0.63078	NaN	1	0	Median	0.74472	0.87363	56.761	6	2	Plateau	1.0836	1.0689	14.802	3	0	Median	1.0104	1.0486	4.3973	4	0	Linear	1171100000	569590000	601520000	272710000	136700000	136010000	285240000	159200000	126040000	260980000	111190000	149790000	352180000	162500000	189680000	6670	982	6300	41446;41447;41448;41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461	56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375;56376;56377;56378;56379;56380;56381;56382;56383;56384;56385;56386;56387	56371		557	24	
DAGTIAGLNVMR	0	Unmodified	1216.6234	0.62340617	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.97	10	5	2			4	4	2		6	8	6	7	67.008	62.753	2;3	9.6329E-50	33678	160513_QHF_FH_JSI11Kac_4	208.25	176.31			1.0408	1.0744	43.434	24	8	Median	1.1588	0.98579	31.46	5	1	Median	0.85349	1.0111	58.085	8	4	Median	1.1305	1.1212	46.128	6	1	Median	1.0386	1.1033	14.55	5	2	Median	12672000000	5796700000	6875000000	2951100000	1151200000	1799800000	2854400000	1690300000	1164100000	3835400000	1624000000	2211500000	3030800000	1331200000	1699600000	6671	982	6300	41462;41463;41464;41465;41466;41467;41468;41469;41470;41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488	56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402;56403;56404;56405;56406;56407;56408;56409;56410;56411;56412;56413;56414;56415;56416;56417;56418;56419;56420;56421;56422;56423;56424;56425;56426;56427;56428;56429;56430;56431	56412			44	
DAGVIAGLNVLR	0	Unmodified	1196.6877	0.68772099	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.18	12	15	6			1	4	4		7	12	13	10	82.028	79.281	2;3	1.622E-31	73632	160511_QHF_FH_JSI10i_1	191.85	176.59			1.173	1.0352	82.675	41	31	Median	1.1903	0.98976	68.917	6	3	Median	0.7934	0.95006	68.585	12	8	Median	1.5401	1.4994	110.56	13	11	Median	1.2626	1.3694	73.225	10	9	Median	16996000000	8742400000	8253300000	2375500000	1112100000	1263400000	4533900000	2544000000	1990000000	5934000000	2926900000	3007100000	4152300000	2159500000	1992800000	6672	954;1416	6301	41489;41490;41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502;41503;41504;41505;41506;41507;41508;41509;41510;41511;41512;41513;41514;41515;41516;41517;41518;41519;41520;41521;41522;41523;41524;41525;41526;41527;41528;41529;41530	56432;56433;56434;56435;56436;56437;56438;56439;56440;56441;56442;56443;56444;56445;56446;56447;56448;56449;56450;56451;56452;56453;56454;56455;56456;56457;56458;56459;56460;56461;56462;56463;56464;56465;56466;56467;56468;56469;56470;56471;56472;56473;56474;56475;56476;56477;56478;56479;56480;56481;56482;56483;56484	56456			53	
DAGYEFDICFTSVQK	1	Unmodified	1778.7822	0.78215124	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	85.121	84.786	2	1.7266E-21	76996	160511_QHF_FH_JSI10i_1	177.1	164.09			0.70551	0.82587	27.988	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.70551	0.82587	NaN	1	0	Median	0.86643	0.84126	NaN	1	1	Median	1.2916	1.3531	NaN	1	1	Median	79465000	44188000	35278000	0	0	0	42384000	21683000	20701000	16687000	11694000	4992500	20395000	10810000	9584500	6673	1144	6302	41531;41532;41533;41534	56485;56486;56487;56488;56489	56488			5	
DAGYGGISLAVEGPSK	1	Unmodified	1519.7518	0.75183739	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	65.232	64.617	2;3	1.8962E-08	58469	160511_QHF_FH_JSI10i_1	134.68	119.71			0.71084	0.75001	31.38	8	8	Median	0.91561	0.75299	20.855	2	2	Median	0.67895	0.79708	5.9436	2	2	Median	0.76253	0.74843	9.5577	2	2	Median	0.48499	0.49031	57.446	2	2	Median	789210000	476250000	312960000	169220000	81987000	87232000	292760000	200060000	92701000	201370000	118910000	82457000	125860000	75292000	50571000	6674	512	6303	41535;41536;41537;41538;41539;41540;41541;41542	56490;56491;56492;56493;56494;56495;56496;56497	56494			8	
DAGYGGLSLSIEGPSK	1	Unmodified	1549.7624	0.76240208	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	70.877	70.404	2;3	4.4095E-15	63724	160511_QHF_FH_JSI10i_1	191.53	178.44			1.0132	1.0259	8.4559	7	0	Median	1.0683	0.89255	NaN	1	0	Median	0.88062	1.0253	0.087271	2	0	Median	1.1461	1.106	9.9099	2	0	Median	0.96742	1.0138	4.6038	2	0	Median	1339500000	696010000	643460000	147620000	72899000	74725000	474540000	243020000	231530000	313200000	141010000	172200000	404100000	239090000	165010000	6675	1192	6304	41543;41544;41545;41546;41547;41548;41549	56498;56499;56500;56501;56502;56503;56504;56505;56506;56507;56508;56509;56510	56506			13	
DAHLLVESK	1	Unmodified	1010.5397	0.53965977	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.66	4	16	1				2	2		6	6	7	6	29.172	26.946	2;3	4.1982E-06	22643	160511_QHF_FH_JSI11i_2	134.26	111.77			3.0064	2.8462	177.27	25	25	Median	2.6557	2.2556	160.19	6	6	Median	0.83282	0.98244	164.94	6	6	Median	3.011	2.8515	168.63	7	7	Median	7.7592	8.4412	248.58	6	6	Median	2990500000	1347600000	1642900000	616880000	286250000	330630000	909830000	376120000	533700000	951290000	436890000	514400000	512520000	248380000	264130000	6676	1544	6305	41550;41551;41552;41553;41554;41555;41556;41557;41558;41559;41560;41561;41562;41563;41564;41565;41566;41567;41568;41569;41570;41571;41572;41573;41574	56511;56512;56513;56514;56515;56516;56517;56518;56519;56520;56521;56522;56523;56524;56525;56526;56527;56528;56529;56530;56531;56532;56533;56534;56535;56536	56529			26	
DAHLLVESKNLDFQK	2	Acetyl (K)	1797.9261	0.92611336	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.286	67.677	3	0.00017889	35965	160513_QHF_FH_JSI11Kac_5	82.55	63.475			0.72999	0.71709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72999	0.71709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4294500	2574800	1719700	0	0	0	0	0	0	4294500	2574800	1719700	0	0	0	6677	1544	6306	41575	56537	56537	1555		1	
DAHNALLDIQSSGR	0	Unmodified	1495.7379	0.73791866	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.72	4.63	6	8	1				3			2	5	7	4	47.199	44.332	2;3	6.1639E-40	38037	160511_QHF_FH_JSI11i_2	201.38	178.06			0.94227	1.0456	16.705	14	1	Median	1.4019	1.1971	NaN	1	0	Median	0.8733	1.0502	18.457	4	0	Median	1.0733	1.0763	15.752	5	1	Median	0.90324	0.98594	21.387	4	0	Median	1995300000	1007600000	987750000	151310000	66768000	84543000	447660000	215730000	231940000	895250000	480860000	414400000	501110000	244240000	256870000	6678	40	6307	41576;41577;41578;41579;41580;41581;41582;41583;41584;41585;41586;41587;41588;41589;41590;41591;41592;41593	56538;56539;56540;56541;56542;56543;56544;56545;56546;56547;56548;56549;56550;56551;56552;56553;56554;56555;56556;56557;56558;56559;56560	56553			22	
DAHQSLLATR	0	Unmodified	1110.5782	0.57817054	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	21.517	20.958	2;3	8.6371E-07	17791	160511_QHF_FH_JSI9i_2	123.86	96.606			1.0868	1.0959	56.948	8	4	Median	0.85934	0.74516	NaN	1	1	Median	0.74179	0.91901	NaN	1	0	Median	1.9614	1.7783	67.88	3	2	Median	1.1161	1.1419	45.513	3	1	Median	579540000	253920000	325620000	78846000	36967000	41879000	78163000	46097000	32066000	238390000	72547000	165840000	184140000	98308000	85831000	6679	1002	6308	41594;41595;41596;41597;41598;41599;41600;41601	56561;56562;56563;56564;56565;56566;56567;56568;56569;56570	56565			10	
DAHSIHGTNPQYLVEK	1	Unmodified	1807.8853	0.88531118	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								2	2	1	36.44	35.698	3	0.00024544	30726	160511_QHF_FH_JSI11i_3	58.09	46.476			0.89798	1.1129	32.447	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0029	1.2397	15.263	2	2	Median	1.2182	1.2002	49.985	2	0	Median	0.72827	0.79464	NaN	1	1	Median	284120000	148640000	135480000	0	0	0	133040000	69735000	63301000	112240000	52063000	60175000	38848000	26844000	12003000	6680	3582	6309	41602;41603;41604;41605;41606	56571;56572;56573;56574;56575	56571			5	
DAHSNLLAK	1	Unmodified	967.50869	0.50869399	500	O75323	GBAS	Protein NipSnap homolog 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	17.296	16.319	2	0.030514	13243	160511_QHF_FH_JSI12i_2	40.067	27.636			3.4975	3.9042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4975	3.9042	NaN	1	0	Median	28923000	7667100	21256000	0	0	0	0	0	0	0	0	0	28923000	7667100	21256000	6681	500	6310	41607	56576	56576			1	
DAHSQGEVVSCLEK	1	Unmodified	1557.7093	0.70932065	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.42	32.181	2	0.010747	28813	160511_QHF_FH_JSI11i_1	45.879	30.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6682	3903	6311	41608	56577	56577			1	
DAHSTLLSK	1	Unmodified	970.50836	0.50835964	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		1	3	17.773	17.039	2;3	0.00026574	14180	160511_QHF_FH_JSI9i_2	83.948	62.5			0.47703	0.47292	47.059	5	3	Median	0.53722	0.45723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47703	0.47292	NaN	1	1	Median	0.70425	0.79395	63.563	3	2	Plateau	596400000	404780000	191620000	83671000	63746000	19924000	0	0	0	205680000	121260000	84427000	307050000	219780000	87273000	6683	4336	6312	41609;41610;41611;41612;41613	56578;56579;56580;56581;56582	56581			5	
DAHVDFLK	1	Unmodified	943.47633	0.47633123	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	40.157	38.992	3	0.0040491	34104	160511_QHF_FH_JSI9i_2	50.607	41.393			2.4744	2.6182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4744	2.6182	NaN	1	1	Median	26761000	3258300	23503000	0	0	0	12695000	0	12695000	0	0	0	14067000	3258300	10809000	6684	5039	6313	41614;41615;41616	56583;56584;56585	56584			3	
DAIAALGLLQK	1	Unmodified	1111.6601	0.66010926	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	86.322	85.87	2	6.4003E-06	77901	160511_QHF_FH_JSI10i_1	124.23	102.14			0.34473	0.30493	51.29	4	4	Median	0.45521	0.36817	NaN	1	1	Median	0.16831	0.19774	NaN	1	1	Median	0.26107	0.25255	NaN	1	1	Median	0.60233	0.64223	NaN	1	1	Median	89893000	68368000	21525000	13422000	10384000	3038100	28143000	23485000	4657700	26037000	18846000	7190200	22292000	15653000	6639000	6685	21	6314	41617;41618;41619;41620;41621	56586;56587;56588;56589;56590	56589			5	
DAIAILDGIPSR	0	Unmodified	1239.6823	0.68230126	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.09	2	5					1			2	1	3	2	82.895	80.827	2	1.7688E-05	74797	160511_QHF_FH_JSI12i_1	91.937	79.31			1.2825	1.1426	53.754	7	6	Median	1.0708	0.91427	31.524	2	2	Median	0.58081	0.62922	NaN	1	0	Median	2.0218	1.9667	61.572	3	3	Plateau	2.0999	2.2255	NaN	1	1	Median	83592000	38407000	45185000	21031000	10415000	10616000	1162600	674970	487600	53893000	24350000	29543000	7505400	2967500	4538000	6686	5351	6315	41622;41623;41624;41625;41626;41627;41628;41629	56591;56592;56593;56594;56595;56596;56597;56598;56599	56593			9	
DAIAQAEMDLK	1	Unmodified	1203.5805	0.58053831	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.708	58.051	2	0.0002054	52696	160511_QHF_FH_JSI12i_1	91.636	63.238			13.032	13.836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.032	13.836	NaN	1	1	Median	2427700000	40578000	2387200000	0	0	0	0	0	0	0	0	0	2427700000	40578000	2387200000	6687	3635	6316	41630	56600	56600			1	
DAIAQAVR	0	Unmodified	842.46102	0.46101552	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.2	3	3	1			3				3	3	2	2	23.811	20.872	2	0.00026599	12565	160513_QHF_FH_JSI11Kac_3	117.16	64.477			0.89513	0.95843	14.099	10	0	Median	1.22	0.98249	9.8312	3	0	Median	0.72771	0.8732	12.514	3	0	Plateau	0.97552	0.95736	13.869	2	0	Median	0.73929	0.80352	21.425	2	0	Median	2312600000	1186700000	1125900000	769450000	364410000	405040000	644880000	343910000	300970000	839580000	447050000	392530000	58671000	31344000	27328000	6688	1322	6317	41631;41632;41633;41634;41635;41636;41637;41638;41639;41640	56601;56602;56603;56604;56605;56606;56607;56608;56609;56610;56611	56604			11	
DAIDPLLFK	1	Unmodified	1030.5699	0.56989727	4957	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	80	79.424	2	0.0004804	70613	160511_QHF_FH_JSI9i_1	79.906	68.001			1.5049	1.4109	30.853	3	1	Plateau	1.6037	1.2938	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5049	1.4192	NaN	1	0	Median	0.80413	0.7989	NaN	1	1	Median	59959000	24573000	35386000	20398000	7374900	13023000	0	0	0	23644000	8969900	14675000	15917000	8228100	7688500	6689	4957	6318	41641;41642;41643	56612;56613;56614	56614			3	
DAIEELVK	1	Unmodified	915.49131	0.49131259	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	57.985	54.407	2	0.00091687	48083	160511_QHF_FH_JSI9i_1	96.492	35.732			0.80882	0.90803	23.088	6	0	Median	1.1704	0.96105	NaN	1	0	Median	0.7301	0.85794	NaN	1	0	Median	0.63815	0.6265	12.546	2	0	Median	0.92831	0.99958	2.929	2	0	Median	466270000	231930000	234340000	122730000	55414000	67316000	107990000	59369000	48621000	138920000	70242000	68678000	96633000	46905000	49728000	6690	1695	6319	41644;41645;41646;41647;41648;41649	56615;56616;56617;56618;56619;56620;56621;56622;56623;56624;56625	56624			11	
DAIELNAANYTVWHFR	0	Unmodified	1918.9326	0.93259572	1652	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.997	77.404	3	9.3268E-17	42898	160513_QHF_FH_JSI10Kac_6	136.01	120.07			0.66246	0.76419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66246	0.76419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82201000	55196000	27006000	0	0	0	82201000	55196000	27006000	0	0	0	0	0	0	6691	1652	6320	41650	56626	56626			1	
DAIGISLLK	1	Unmodified	928.55933	0.55933258	3663	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		73.39	73.125	2	0.013585	66160	160511_QHF_FH_JSI10i_1	56.258	17.466			0.33743	0.34164	17.748	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28183	0.30135	NaN	1	1	Median	0.40399	0.38732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20566000	13225000	7340700	0	0	0	9213900	5741900	3472100	11352000	7483600	3868600	0	0	0	6692	3663	6321	41651;41652	56627;56628	56628			2	
DAIHFYNK	1	Unmodified	1006.4872	0.48723027	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.29	2	6	3					2	3	4	2	5	5	34.26	30.558	2;3	0.00061641	26013	160511_QHF_FH_JSI11i_2	78.77	61.375			1.082	1.0656	23.506	15	4	Median	1.1844	0.98425	12.789	4	1	Median	0.79874	0.98691	NaN	1	0	Median	1.104	1.132	37.449	5	2	Median	0.94977	1.0669	8.7508	5	1	Median	2402800000	1172000000	1230800000	655640000	299250000	356390000	357520000	182550000	174970000	676820000	307060000	369760000	712830000	383140000	329690000	6693	1386	6322	41653;41654;41655;41656;41657;41658;41659;41660;41661;41662;41663;41664;41665;41666;41667;41668	56629;56630;56631;56632;56633;56634;56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648	56641			20	
DAIHFYNKSLAEHR	1	Acetyl (K)	1741.8536	0.85361712	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	58.59	49.227	3	3.4303E-17	27043	160513_QHF_FH_JSI10Kac_6	140.84	127.96			0.034941	0.033516	199.44	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98888	1.1433	NaN	1	0	Median	0.034941	0.033516	NaN	1	1	Median	0.92007	0.9786	NaN	1	0	Median	218740000	165130000	53610000	0	0	0	54251000	24938000	29313000	109970000	109190000	779330	54522000	31004000	23518000	6694	1386	6323	41669;41670;41671	56649;56650;56651	56651	1333		3	
DAINQGMDEELERDEK	1	Unmodified	1890.8265	0.82653525	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	43.54	42.844	2;3	4.5195E-06	38955	160511_QHF_FH_JSI12i_1	138.21	126.9			0.9915	1.029	16.21	7	1	Median	1.4844	1.2095	22.852	2	1	Median	0.9915	1.1956	NaN	1	0	Median	0.98063	0.95028	15.432	2	0	Median	0.94087	0.99302	1.0832	2	0	Median	2244300000	1182100000	1062200000	294020000	141430000	152590000	675620000	421360000	254270000	605190000	301360000	303830000	669430000	317960000	351480000	6695	990	6324	41672;41673;41674;41675;41676;41677;41678	56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665	56660			14	
DAIPENLPPLTADFAEDK	1	Unmodified	1954.9524	0.95238769	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	92.855	92.473	2;3	1.7026E-07	82138	160511_QHF_FH_JSI9i_1	91.475	74.809		+	0.99489	0.94121	37.772	8	3	Median	1.2885	1.0572	20.057	2	0	Median	1.1805	1.3754	21.034	2	1	Median	0.76304	0.74502	33.062	2	1	Median	0.67935	0.691	43.701	2	1	Median	968920000	499990000	468920000	199950000	88470000	111480000	294010000	132980000	161030000	226540000	127330000	99204000	248420000	151210000	97208000	6696	50	6325	41679;41680;41681;41682;41683;41684;41685;41686	56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679;56680;56681;56682;56683;56684;56685;56686	56686			21	
DAISAGK	1	Unmodified	660.34425	0.34425443	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.731	7.4944	2	0.033819	5423	160511_QHF_FH_JSI10i_1	51.787	51.787			0.61753	0.71408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61753	0.71408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202110000	117260000	84852000	0	0	0	202110000	117260000	84852000	0	0	0	0	0	0	6697	3432	6326	41687	56687	56687			1	
DAISGIGTDEK	1	Unmodified	1104.5299	0.52988294	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	4.52	2				3	6				1	4	3	3	34.493	26.513	2	1.3568E-13	16858	160513_QHF_FH_JSI11Kac_3	150.61	51.167			0.6084	0.70699	38.573	10	6	Median	1.4926	1.1568	NaN	1	0	Median	0.6084	0.70699	33.384	4	3	Median	0.56714	0.55061	50.822	3	2	Median	0.65895	0.71125	41.761	2	1	Median	998300000	636020000	362280000	6338300	2296000	4042300	478270000	318650000	159620000	499120000	307420000	191700000	14574000	7654200	6919700	6698	891	6327	41688;41689;41690;41691;41692;41693;41694;41695;41696;41697;41698	56688;56689;56690;56691;56692;56693;56694;56695;56696;56697;56698;56699;56700;56701	56691			14	
DAITQALFLR	0	Unmodified	1146.6397	0.63970816	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.55	2	3					1	3		1	4	3	1	84.706	79.78	2	9.7684E-06	74111	160511_QHF_FH_JSI9i_2	105.1	58.107			0.91482	1.0027	26.368	9	1	Median	1.1711	1.0268	NaN	1	0	Median	0.72123	0.82628	21.914	4	0	Median	1.1701	1.1581	38.493	3	1	Median	1.0095	1.0027	NaN	1	0	Median	101850000	50641000	51209000	17342000	7446300	9895900	37047000	21059000	15988000	31588000	14087000	17501000	15872000	8048600	7823600	6699	5451	6328	41699;41700;41701;41702;41703;41704;41705;41706;41707	56702;56703;56704;56705;56706;56707;56708;56709;56710;56711;56712;56713	56706			11	
DAIYGHPLFPLLALVFEK	1	Unmodified	2042.1241	0.12408489	200	O14770	MEIS2	Homeobox protein Meis2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.86	103.86	3	0.0036763	90568	160511_QHF_FH_JSI12i_3	47.754	42.753			0.88017	0.94225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88017	0.94225	NaN	1	1	Median	4895400	2506800	2388500	0	0	0	0	0	0	0	0	0	4895400	2506800	2388500	6700	200	6329	41708	56714	56714			1	
DAIYSHK	1	Unmodified	832.40792	0.40791731	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		8.8175	8.6204	2	0.013252	6392	160511_QHF_FH_JSI9i_2	58.917	21.272			1.1937	1.1779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1937	1.1779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50208000	23804000	26403000	0	0	0	0	0	0	50208000	23804000	26403000	0	0	0	6701	3250	6330	41709;41710	56715;56716	56715			2	
DAKHTNFVEFR	1	Acetyl (K)	1404.6786	0.67861287	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		57.599	46.733	3	0.002414	25684	160513_QHF_FH_JSI11Kac_5	63.727	48.34			0.060478	0.060048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.060478	0.060048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3059500	2979000	80511	0	0	0	0	0	0	3059500	2979000	80511	0	0	0	6702	1809	6331	41711	56717	56717	1831		1	
DALAKALHAR	1	Acetyl (K)	1106.6196	0.61964142	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.213	42.488	2	0.0044718	23049	160513_QHF_FH_JSI11Kac_6	76.064	57.624			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6703	2332	6332	41712	56718	56718	2426		1	
DALDGPAAEAEPEHSFDGLR	0	Unmodified	2095.9447	0.94467655	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	60.619	60.075	3	3.0051E-05	54545	160511_QHF_FH_JSI11i_1	60.826	54.052			1.108	1.088	0.17673	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.154	1.0867	NaN	1	0	Median	1.0639	1.0894	NaN	1	1	Median	98024000	51249000	46774000	0	0	0	0	0	0	64490000	36171000	28319000	33534000	15078000	18455000	6704	2636	6333	41713;41714	56719;56720	56719			2	
DALDGPAAEAEPEHSFDGLRR	0	Unmodified	2252.0458	0.045787579	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			53.971	53.05	3	1.6973E-05	46858	160511_QHF_FH_JSI10i_2	73.11	64.796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7307500	7307500	0	0	0	0	7307500	7307500	0	0	0	0	0	0	0	6705	2636	6334	41715	56721	56721			1	
DALDQLR	0	Unmodified	829.42938	0.42938104	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.84	31.459	2	0.0085196	27619	160511_QHF_FH_JSI9i_1	72.138	7.3351			0.90876	1.072	20.71	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90876	1.072	NaN	1	0	Median	1.2971	1.2551	NaN	1	0	Median	0.78176	0.83249	NaN	1	0	Median	235470000	115130000	120340000	0	0	0	96190000	46058000	50132000	78408000	39844000	38564000	60870000	29228000	31642000	6706	1888	6335	41716;41717;41718;41719	56722;56723;56724;56725	56725			4	
DALEFWLQAGVDGFQVR	0	Unmodified	1949.9636	0.9635615	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.96		5							4	3	2	2	2	100.52	96.731	2;3	2.6326E-66	90265	160511_QHF_FH_JSI11i_2	238.02	195.93			0.87904	0.99088	25.716	9	2	Median	1.25	1.057	45.152	3	1	Median	0.82825	0.9919	0.7315	2	0	Median	1.019	1.0198	4.0735	2	0	Median	0.75869	0.79868	21.405	2	1	Median	901500000	430630000	470870000	166740000	64814000	101920000	148320000	81810000	66508000	381160000	166790000	214370000	205280000	117220000	88067000	6707	895	6336	41720;41721;41722;41723;41724;41725;41726;41727;41728	56726;56727;56728;56729;56730;56731;56732;56733;56734	56729			8	
DALEGEK	1	Unmodified	760.3603	0.36029842	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.0935	8.8578	2	0.023312	6665	160511_QHF_FH_JSI10i_1	58.782	30.675			1.4561	1.6961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4561	1.6961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139420000	62270000	77147000	0	0	0	139420000	62270000	77147000	0	0	0	0	0	0	6708	4989	6337	41729	56735	56735			1	
DALEPGQR	0	Unmodified	884.43519	0.4351947	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	14.472	9.3098	2	0.0012584	9714	160511_QHF_FH_JSI10i_1	91.906	18.867			1.1245	1.1322	11.649	8	0	Median	1.2563	1.0177	3.7583	2	0	Median	1.0367	1.2263	6.0677	2	0	Median	1.0459	1.0274	14.653	2	0	Median	1.1132	1.2024	9.4189	2	0	Median	3282400000	1613000000	1669400000	720960000	301950000	419010000	843640000	431590000	412050000	792650000	377480000	415170000	925180000	502000000	423180000	6709	877	6338	41730;41731;41732;41733;41734;41735;41736;41737	56736;56737;56738;56739;56740;56741;56742;56743;56744;56745;56746;56747	56741			12	
DALGAQNASGER	0	Unmodified	1187.5531	0.553078	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.402	12.964	2	7.5194E-05	10417	160511_QHF_FH_JSI9i_1	94.363	74.033			1.0461	0.91486	32.375	4	1	Linear	1.1508	0.93256	NaN	1	0	Median	0.92924	1.0796	NaN	1	0	Median	0.95103	0.92889	NaN	1	0	Median	1.7944	1.8402	NaN	1	1	Median	202410000	96536000	105880000	51580000	25335000	26245000	48934000	22843000	26091000	54597000	30991000	23606000	47302000	17367000	29935000	6710	4121	6339	41738;41739;41740;41741	56748;56749;56750;56751	56751			4	
DALHSEK	1	Unmodified	798.38718	0.38718187	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.952	4.7315	2	0.0063524	2634	160511_QHF_FH_JSI10i_1	79.469	46.111			0.8562	0.84217	1.1805	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87711	0.83516	NaN	1	1	Median	0.83579	0.84922	NaN	1	1	Median	283800000	160280000	123520000	0	0	0	0	0	0	154790000	85053000	69737000	129010000	75223000	53784000	6711	432	6340	41742;41743;41744	56752;56753;56754	56754			3	
DALILFFNR	0	Unmodified	1107.6077	0.60767975	5149	Q9NZC9	SMARCAL1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			2	1	90.706	81.326	2	1.0605E-05	45536	160513_QHF_FH_JSI11Kac_6	123.45	105.23			0.58554	0.57973	98.966	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58554	0.57973	98.966	2	2	Median	NaN	NaN	NaN	0	0	Median	95808000	45573000	50235000	0	0	0	0	0	0	76995000	45573000	31422000	18813000	0	18813000	6712	5149	6341	41745;41746;41747	56755;56756;56757	56755			3	
DALKTEFK	2	Acetyl (K)	992.51786	0.51786169	1878	P56381;Q5VTU8	ATP5E;ATP5EP2	ATP synthase subunit epsilon, mitochondrial;ATP synthase subunit epsilon-like protein, mitochondrial	yes	no	1	0	0	1			By MS/MS	By MS/MS	13	0						3						1	2	51.692	42.594	2	0.013882	23004	160513_QHF_FH_JSI12Kac_3	76.827	43.564			1.5686	1.6835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5686	1.6835	NaN	1	1	Median	6119300	2886900	3232400	0	0	0	0	0	0	0	0	0	6119300	2886900	3232400	6713	1878	6342	41748;41749;41750	56758;56759;56760	56760	1892		3	
DALLDQIR	0	Unmodified	942.51345	0.51344502	126	O00401	WASL	Neural Wiskott-Aldrich syndrome protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.799	52.13	2	0.0021284	47092	160511_QHF_FH_JSI11i_1	81.191	30.559			1.1178	1.16	9.8342	4	0	Linear	1.1775	0.95567	NaN	1	0	Median	0.78121	0.91262	NaN	1	0	Median	1.1728	1.109	NaN	1	0	Median	1.0654	1.0984	NaN	1	0	Median	216480000	111440000	105030000	51722000	24089000	27633000	47769000	30126000	17643000	62844000	30841000	32003000	54141000	26384000	27756000	6714	126	6343	41751;41752;41753;41754	56761;56762;56763;56764;56765;56766;56767;56768	56761			8	
DALLLIFANK	1	Unmodified	1116.6543	0.6542956	1452	P36406	TRIM23	E3 ubiquitin-protein ligase TRIM23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	4.12		1						3	6	2	2	3	3	89.681	80.589	2	9.0109E-14	44695	160513_QHF_FH_JSI11Kac_6	150.88	0			0.68069	0.73226	80.523	8	5	Median	1.0025	0.87089	NaN	1	0	Median	0.62593	0.73226	5.307	2	1	Median	1.0742	1.0209	61.585	2	1	Median	0.386	0.43208	142.23	3	3	Median	491610000	249740000	241870000	75565000	39205000	36360000	92570000	49832000	42739000	183270000	90367000	92900000	140210000	70333000	69876000	6715	1452	6344	41755;41756;41757;41758;41759;41760;41761;41762;41763;41764	56769;56770;56771;56772;56773;56774;56775;56776;56777;56778;56779;56780	56771			12	
DALLLSFK	1	Unmodified	905.52222	0.52221879	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		81.028	70.484	2	0.032667	37163	160513_QHF_FH_JSI10Kac_4	49.418	13.538			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6716	2297	6345	41765;41766	56781;56782	56781			2	
DALLSETAFSMNSTEENSLSHLEK	1	Unmodified	2652.2225	0.22249089	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			86.633	86.503	3	0.00070008	78550	160511_QHF_FH_JSI10i_1	45.011	37.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6717	2574	6346	41767	56783	56783			1	
DALMLFQR	0	Unmodified	992.51134	0.51133653	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.37		2						3		2	1	1	1	74.117	69.912	2	0.0019603	61056	160511_QHF_FH_JSI12i_2	94.262	70.29			0.78473	0.78401	26.782	3	3	Plateau	0.99918	0.85326	37.105	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86295	0.93649	NaN	1	1	Median	66221000	33131000	33090000	33381000	14085000	19296000	0	0	0	0	0	0	32840000	19046000	13794000	6718	2575	6347	41768;41769;41770;41771;41772	56784;56785;56786;56787;56788	56784			5	
DALMQPVRK	1	Unmodified	1056.575	0.57499942	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	23.013	22.517	2	2.8889E-05	18528	160511_QHF_FH_JSI12i_3	122.13	108.55			0.47109	0.44413	60.488	2	2	Median	0.77685	0.68118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28568	0.28957	NaN	1	1	Median	54037000	40217000	13820000	17445000	10769000	6675800	0	0	0	0	0	0	36592000	29448000	7144400	6719	507	6348	41773;41774;41775;41776	56789;56790;56791;56792	56792			4	
DALNENSQLQESQK	1	Unmodified	1602.7485	0.74854293	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	26.394	25.614	2	1.0033E-23	22420	160511_QHF_FH_JSI11i_1	154.66	135.91			0.87396	0.73614	34.255	4	4	Median	0.87396	0.7263	24.971	2	2	Median	0.7796	0.88963	49.853	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103860000	56301000	47557000	52398000	30829000	21569000	51461000	25473000	25988000	0	0	0	0	0	0	6720	4195	6349	41777;41778;41779;41780;41781;41782	56793;56794;56795;56796;56797;56798	56793			6	
DALNIETAIK	1	Unmodified	1086.5921	0.59208927	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.28	2					5	1			1	3	1	3	67.909	60.517	2	3.5264E-10	53261	160511_QHF_FH_JSI9i_1	139.98	108.04			1.1197	1.1433	74.989	8	3	Median	0.9209	0.74511	NaN	1	0	Median	1.1261	1.2733	61.45	3	2	Median	1.1701	1.1311	NaN	1	0	Median	1.1134	1.1556	102.03	3	1	Median	970960000	479500000	491460000	400210000	196840000	203370000	25247000	14185000	11062000	10468000	5158200	5309700	535030000	263320000	271720000	6721	870	6350	41783;41784;41785;41786;41787;41788;41789;41790	56799;56800;56801;56802;56803;56804;56805;56806;56807;56808;56809;56810;56811;56812	56806			14	
DALNLAQMQEQTLQLEQQSK	1	Unmodified	2315.1427	0.14272443	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			87.97	87.502	3	4.6853E-07	79493	160511_QHF_FH_JSI10i_1	95.227	90.018			1.2176	1.1929	22.362	2	1	Median	1.6841	1.3972	NaN	1	1	Median	0.88033	1.0184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	242720000	99309000	143410000	76735000	21187000	55549000	165990000	78122000	87864000	0	0	0	0	0	0	6722	5035	6351	41791;41792	56813;56814	56813			2	
DALNQATSQVESK	1	Unmodified	1389.6736	0.67358707	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.47	5				4					1	2	3	3	36.809	33.831	2	1.9807E-17	30525	160511_QHF_FH_JSI11i_1	216.91	170.46			0.7675	0.71637	31.769	7	5	Median	0.86436	0.71637	NaN	1	1	Median	0.60215	0.71582	NaN	1	1	Median	0.75242	0.7185	1.2063	2	1	Median	1.0263	1.0768	51.085	3	2	Median	816140000	405610000	410520000	141620000	58336000	83283000	179560000	91977000	87581000	177830000	96389000	81445000	317130000	158910000	158210000	6723	5213	6352	41793;41794;41795;41796;41797;41798;41799;41800;41801	56815;56816;56817;56818;56819;56820;56821;56822;56823;56824	56815			10	
DALPEYSTFDVNMK	1	Unmodified	1628.7392	0.73922379	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	74.728	74.246	2	0.00013032	65951	160511_QHF_FH_JSI9i_1	112.13	77.593			1.0205	1.0543	28.427	7	6	Median	1.0508	0.85789	29.154	2	2	Median	0.7687	0.90127	39.674	2	2	Median	1.1638	1.1214	24.188	2	2	Median	1.2849	1.3478	NaN	1	0	Median	291680000	140520000	151160000	70559000	31964000	38595000	94156000	50412000	43744000	81244000	36220000	45024000	45724000	21927000	23796000	6724	1656	6353	41802;41803;41804;41805;41806;41807;41808	56825;56826;56827;56828;56829;56830;56831	56830			7	
DALPEYSTFDVNMKPVVQEPNQK	2	Unmodified	2648.2792	0.27921791	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	78.364	77.834	3	0.00015063	70858	160511_QHF_FH_JSI12i_1	52.509	38.778			1.1463	1.161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1463	1.161	NaN	1	0	Median	24633000	10936000	13697000	0	0	0	0	0	0	0	0	0	24633000	10936000	13697000	6725	1656	6354	41809	56832;56833	56832			2	
DALQGFK	1	Unmodified	777.4021	0.40210366	906;920	P08579;P09012	SNRPB2;SNRPA	U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	36.308	32.141	2	0.007086	28672	160511_QHF_FH_JSI11i_1	88.734	53.629			0.64362	0.68464	38.197	7	3	Median	0.77787	0.63219	NaN	1	0	Median	0.53992	0.64173	21.927	2	1	Median	1.2091	1.1715	41.949	2	1	Median	0.54368	0.58356	22.591	2	1	Median	2800500000	1356600000	1444000000	648010000	305800000	342210000	687980000	399290000	288690000	761260000	333340000	427920000	703280000	318140000	385140000	6726	906;920	6355	41810;41811;41812;41813;41814;41815;41816	56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844;56845	56834			12	
DALQVAQEMK	1	Unmodified	1131.5594	0.55940893	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	49.352	48.634	2	6.6462E-14	43857	160511_QHF_FH_JSI11i_1	143.04	115.51			0.62855	0.59007	87.558	7	7	Median	1.3546	1.114	108.19	2	2	Median	1.0596	1.2413	123.23	2	2	Median	0.60099	0.59007	NaN	1	1	Median	0.96613	1.0105	123.22	2	2	Median	990140000	468100000	522050000	295240000	137390000	157840000	268650000	127370000	141280000	191000000	88203000	102800000	235260000	115130000	120130000	6727	4562	6356	41817;41818;41819;41820;41821;41822;41823;41824	56846;56847;56848;56849;56850;56851;56852;56853	56847			8	
DALRPPLQNINSVQLK	1	Unmodified	1805.0159	0.015931421	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	68.529	68.161	3	1.231E-05	60677	160511_QHF_FH_JSI11i_3	101.96	76.902			0.93708	0.90633	10.705	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88155	1.0785	NaN	1	0	Median	0.93708	0.87238	NaN	1	0	Median	0.9862	0.99452	NaN	1	0	Median	229770000	122710000	107060000	0	0	0	44128000	21997000	22130000	101830000	55583000	46247000	83814000	45135000	38679000	6728	2485	6357	41825;41826;41827	56854;56855;56856;56857	56855			3	
DALSDLALHFLNK	1	Unmodified	1455.7722	0.7721789	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.51		8	5						7	5	4	6	5	99.18	96.391	2;3	5.7989E-117	90040	160511_QHF_FH_JSI10i_2	329.85	305.82			1.0089	0.97753	22.419	19	0	Median	1.1354	0.95167	6.1644	5	0	Median	0.76536	0.91876	3.2123	4	0	Median	1.0165	1.0129	40.064	6	0	Median	0.93838	1.0468	4.5294	4	0	Linear	17248000000	9003600000	8244800000	2531200000	1206200000	1325000000	3661700000	2117500000	1544200000	5437600000	2760100000	2677400000	5618000000	2919800000	2698200000	6729	1722	6358	41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845;41846;41847	56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881;56882;56883;56884;56885;56886;56887;56888	56878			30	
DALSDLALHFLNKMK	2	Acetyl (K);Oxidation (M)	1772.9131	0.91310583	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	1	1			By MS/MS	By MS/MS	16	0									2			1	1	95.973	86.552	3	1.2415E-16	47101	160513_QHF_FH_JSI12Kac_6	138.73	127.46			0.74907	0.75448	53.525	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53626	0.51675	NaN	1	0	Median	1.0463	1.1016	NaN	1	0	Median	178780000	103970000	74810000	0	0	0	0	0	0	105090000	66762000	38330000	73690000	37209000	36481000	6730	1722	6359	41848;41849	56889;56890	56890	1740	1405	2	
DALSDLALHFLNKMK	2	Acetyl (K)	1756.9182	0.91819121	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	99.119	90.408	2;3	1.6299E-121	51520	160513_QHF_FH_JSI11Kac_6	273.24	223.77			0.65646	0.65096	148.59	6	2	Median	0.96851	0.83136	310.69	2	2	Median	0.99555	1.173	NaN	1	0	Median	0.38128	0.36336	39.628	2	0	Median	0.84675	0.88122	NaN	1	0	Median	923100000	564760000	358350000	127520000	57647000	69873000	227610000	114570000	113040000	446360000	324250000	122110000	121610000	68291000	53317000	6731	1722	6359	41850;41851;41852;41853;41854;41855	56891;56892;56893;56894;56895;56896;56897;56898;56899	56893	1740		9	
DALSSVQESQVAQQAR	0	Unmodified	1715.8438	0.84384029	792	P02656	APOC3	Apolipoprotein C-III	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	42.849	42.113	2	4.6119E-28	38183	160511_QHF_FH_JSI12i_1	154.28	121.19			0.76399	0.62226	50.176	3	3	Median	0.76399	0.62226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.535	1.4603	NaN	1	1	Median	0.58063	0.60311	NaN	1	1	Median	55676000	28230000	27446000	14279000	4508500	9771000	0	0	0	22052000	8689200	13362000	19345000	15032000	4312300	6732	792	6360	41856;41857;41858;41859;41860	56900;56901;56902;56903;56904	56902			5	
DALTAEK	1	Unmodified	746.38103	0.38103386	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.77	7					4				3	2	4	2	12.058	10.159	2	6.8163E-05	5385	160513_QHF_FH_JSI9Kac_3	114.78	60.258			0.6206	0.66405	45.409	9	4	Median	0.90225	0.7309	54.121	2	2	Median	0.57518	0.67907	NaN	1	0	Median	0.56525	0.55586	66.351	4	2	Median	0.57464	0.62246	9.1476	2	0	Median	9103200000	4808200000	4294900000	2748900000	1489700000	1259200000	1653500000	896900000	756570000	3155200000	1602000000	1553200000	1545500000	819570000	725940000	6733	4837	6361	41861;41862;41863;41864;41865;41866;41867;41868;41869;41870;41871	56905;56906;56907;56908;56909;56910;56911;56912;56913;56914;56915	56912			11	
DALTAEKSK	2	Acetyl (K)	1003.5186	0.51858998	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	28.01	20.38	2	0.00021047	12064	160513_QHF_FH_JSI12Kac_3	94.692	32.692			0.79143	0.84836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79143	0.84836	NaN	1	0	Median	10413000	8593300	1820100	0	0	0	2913900	2913900	0	2124300	2124300	0	5375200	3555100	1820100	6734	4837	6362	41872;41873;41874;41875;41876	56916;56917;56918;56919;56920	56918	3246		5	
DALVFVLIDEVESLTAAR	0	Unmodified	1960.0517	0.051707805	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.62		7	2		1				6	5	4	4	3	104.98	101.69	2;3	2.8203E-83	58597	160513_QHF_FH_JSI10Kac_6	276.71	246.15			0.86151	1.0023	67.572	13	4	Median	0.31937	0.27227	84.901	4	2	Linear	0.73992	0.88119	27.905	4	0	Median	1.0479	1.0023	10.195	3	0	Median	0.22594	0.23647	6.2966	2	2	Median	2545900000	1794600000	751350000	190490000	139790000	50699000	1006200000	561680000	444540000	58039000	23852000	34187000	1291200000	1069300000	221920000	6735	2692	6363	41877;41878;41879;41880;41881;41882;41883;41884;41885;41886;41887;41888;41889;41890;41891;41892	56921;56922;56923;56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934;56935;56936;56937;56938;56939;56940;56941;56942;56943;56944;56945	56942			25	
DALYFLDDTAK	1	Unmodified	1270.6081	0.60813326	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	8						2			2	3	2	3	79.925	77.444	2	1.3034E-06	71607	160511_QHF_FH_JSI12i_1	119.16	96.415			1.0803	1.2138	53.755	10	8	Median	1.3091	1.0839	62.303	2	2	Median	1.1714	1.3931	76.344	3	2	Median	1.0034	0.98759	56.127	2	2	Median	0.99629	1.0576	48.019	3	2	Median	1361700000	659210000	702450000	319620000	153370000	166250000	301880000	123800000	178070000	386450000	196560000	189890000	353720000	185480000	168240000	6736	228	6364	41893;41894;41895;41896;41897;41898;41899;41900;41901;41902	56946;56947;56948;56949;56950;56951;56952;56953;56954;56955;56956;56957;56958	56948			13	
DAMMAMNGK	1	Unmodified	967.39254	0.3925433	2486	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.157	26.608	2	1.2051E-05	23745	160511_QHF_FH_JSI12i_1	103.91	89.243			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6737	2486	6365	41903	56959	56959			1	
DAMNAAIQQAIK	1	Unmodified	1272.6496	0.64962092	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.523	57.874	2	1.4218E-22	52209	160511_QHF_FH_JSI10i_1	170.47	131.51			0.90201	0.94459	4.5437	4	0	Median	1.182	0.95449	NaN	1	0	Median	0.80369	0.93478	NaN	1	0	Median	0.98289	0.96092	NaN	1	0	Median	0.82778	0.87016	NaN	1	0	Median	760040000	402160000	357870000	233770000	105840000	127930000	197200000	110270000	86924000	171740000	102540000	69200000	157330000	83513000	73821000	6738	3947	6366	41904;41905;41906;41907	56960;56961;56962;56963;56964;56965;56966	56963			7	
DAMPINK	1	Unmodified	787.38982	0.38982441	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.583	19.46	2	0.037222	16681	160511_QHF_FH_JSI11i_1	50.025	22.904			0.3874	0.37537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3874	0.37537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98042000	63243000	34798000	0	0	0	0	0	0	98042000	63243000	34798000	0	0	0	6739	4261	6367	41908	56967	56967			1	
DAMPSDANLNSINK	1	Unmodified	1488.6879	0.68785692	2264	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	47.699	47.001	2;3	1.3404E-10	41325	160511_QHF_FH_JSI10i_1	154.15	139.18			1.0992	0.99341	31.429	6	1	Median	1.158	0.93701	NaN	1	1	Median	1.1373	1.3642	57.672	2	0	Median	1.0743	1.0839	21.693	2	0	Median	1.0434	1.0532	NaN	1	0	Median	1292100000	622680000	669380000	175170000	72050000	103120000	479520000	224000000	255520000	507140000	269780000	237360000	130230000	56852000	73379000	6740	2264	6368	41909;41910;41911;41912;41913;41914	56968;56969;56970;56971;56972;56973;56974	56971			7	
DAMQSFMMPFYLMK	1	Unmodified	1738.7591	0.75911307	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	102.56	102.48	2	1.2383E-14	88372	160511_QHF_FH_JSI12i_2	194.17	175.54			1.1353	1.1067	20.519	6	1	Median	1.1597	0.98593	NaN	1	1	Median	0.94314	1.1446	24.47	2	0	Median	1.3558	1.3511	11.885	2	0	Median	0.78736	0.89614	NaN	1	0	Median	671160000	329750000	341410000	89823000	42360000	47463000	208240000	107310000	100930000	236240000	106720000	129520000	136850000	73358000	63491000	6741	3949	6369	41915;41916;41917;41918;41919;41920	56975;56976;56977;56978;56979	56975			5	
DAMQYASESK	1	Oxidation (M)	1144.4707	0.47065351	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.78	8				3	4				2	4	4	5	19.498	15.026	2	4.9431E-07	6927	160513_QHF_FH_JSI12Kac_3	108.98	97.13			1.1621	1.253	53.437	12	6	Median	1.9817	1.6023	106.7	2	2	Median	1.2011	1.3826	40.832	3	1	Median	0.6146	0.59676	47.409	3	1	Plateau	0.98728	1.0478	37.357	4	2	Median	1170100000	408470000	761650000	463690000	143540000	320160000	232410000	54716000	177700000	220470000	96299000	124170000	253550000	113920000	139630000	6742	2155	6370	41921;41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933;41934;41935	56980;56981;56982;56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996	56993		1795	17	
DAMQYASESK	1	Unmodified	1128.4757	0.47573888	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7	6	2					2				1	1		2	23.872	17.147	2	5.2861E-06	20263	160511_QHF_FH_JSI12i_1	117.7	108.84			1.2415	1.3737	3.0893	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2248	1.4163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2586	1.3524	2.2065	2	2	Median	2885200000	1060900000	1824200000	21077000	21077000	0	1180100000	405530000	774620000	0	0	0	1683900000	634330000	1049600000	6743	2155	6370	41936;41937;41938;41939	56997;56998;56999;57000	56997			4	
DANGNSFATR	0	Unmodified	1051.4683	0.46828574	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.01	4	1				4	1			2	2	2	4	15.514	10.022	2	9.1289E-18	10358	160511_QHF_FH_JSI10i_1	144.77	107.21			0.94413	1.0386	15.833	9	0	Median	1.11	0.89902	20.404	2	0	Median	0.89445	1.0649	NaN	1	0	Median	0.88976	0.86677	26.37	2	0	Median	0.93805	1.0437	11.714	4	0	Median	3628300000	1872600000	1755700000	1396600000	665920000	730640000	16394000	8824200	7570000	1056700000	566780000	489900000	1158600000	631030000	527610000	6744	2013;1204	6371	41940;41941;41942;41943;41944;41945;41946;41947;41948;41949	57001;57002;57003;57004;57005;57006;57007;57008;57009;57010;57011;57012;57013;57014	57006			13	
DANLYISGLPR	0	Unmodified	1217.6404	0.64043645	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.87	5						2			1	2	3	1	70.97	65.379	2	8.8154E-09	60214	160511_QHF_FH_JSI12i_1	117.52	96.82			0.95169	1.029	52.745	4	3	Median	NaN	NaN	NaN	0	0	Median	0.83072	0.997	NaN	1	1	Median	1.0903	1.0619	64.385	3	2	Median	NaN	NaN	NaN	0	0	Median	536310000	241830000	294480000	0	0	0	266700000	137310000	129390000	269610000	104520000	165090000	0	0	0	6745	2700	6372	41950;41951;41952;41953;41954;41955;41956	57015;57016;57017;57018;57019;57020;57021	57016			7	
DANNGNLQLR	0	Unmodified	1113.5527	0.55268407	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	25.516	21.731	2	1.5149E-25	19374	160511_QHF_FH_JSI12i_1	189.14	155.34			1.0402	1.0933	15.591	7	0	Median	1.0256	0.82307	NaN	1	0	Median	1.0171	1.1883	17.523	2	0	Median	1.0586	1.0252	9.0918	2	0	Median	1.0729	1.149	4.742	2	0	Median	1199400000	558920000	640520000	242460000	114700000	127760000	249670000	123980000	125690000	347500000	144160000	203340000	359810000	176080000	183730000	6746	840	6373	41957;41958;41959;41960;41961;41962;41963	57022;57023;57024;57025;57026;57027;57028;57029;57030;57031;57032;57033;57034	57025			13	
DANQVHSTTR	0	Unmodified	1127.5319	0.53194863	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	2	2	5.2462	3.8424	2	7.2324E-08	2875	160511_QHF_FH_JSI10i_1	123.75	93.563			1.2196	1.2213	22.053	7	0	Median	1.129	0.96424	21.555	2	0	Median	1.2136	1.4512	NaN	1	0	Median	1.2256	1.2104	1.2725	2	0	Median	1.3839	1.4936	15.35	2	0	Median	342200000	159040000	183160000	75319000	34629000	40690000	77401000	34656000	42746000	96418000	43262000	53156000	93063000	46495000	46567000	6747	3283	6374	41964;41965;41966;41967;41968;41969;41970	57035;57036;57037;57038;57039;57040	57038			6	
DANSVTSSLR	0	Unmodified	1048.5149	0.51490158	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	26.964	26.564	2	0.00056375	23621	160511_QHF_FH_JSI12i_1	86.882	61.145			1.4816	1.5643	61.048	4	4	Median	NaN	NaN	NaN	0	0	Median	1.5808	1.8665	NaN	1	1	Median	1.7403	1.6416	NaN	1	1	Median	0.81893	0.86006	77.77	2	2	Median	189610000	77136000	112470000	0	0	0	93843000	27360000	66484000	24937000	9826900	15110000	70826000	39949000	30877000	6748	5722	6375	41971;41972;41973;41974;41975	57041;57042;57043;57044;57045	57042			5	
DANSVTSSLRK	1	Unmodified	1176.6099	0.6098646	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	2.76	2	8	7				1			2	5	8	3	23.117	22.184	2;3	0.00023894	18331	160511_QHF_FH_JSI12i_3	96.015	84.525			0.52728	0.56841	99.033	17	17	Median	1.0122	0.86405	91.899	2	2	Median	0.58845	0.708	92.293	4	4	Median	0.84927	0.82909	127.75	8	8	Median	0.43761	0.44395	20.292	3	3	Median	1659000000	922830000	736200000	232340000	117140000	115200000	242860000	151310000	91546000	818340000	425900000	392440000	365490000	228480000	137020000	6749	5722	6376	41976;41977;41978;41979;41980;41981;41982;41983;41984;41985;41986;41987;41988;41989;41990;41991;41992;41993	57046;57047;57048;57049;57050;57051;57052;57053;57054;57055;57056;57057;57058;57059;57060;57061;57062;57063;57064	57063			19	
DAPELGYAK	1	Unmodified	962.47091	0.4709115	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					1	3	2	36.903	33.005	2	0.0031913	29524	160511_QHF_FH_JSI10i_1	71.501	43.976			0.62098	0.66947	45.752	5	5	Median	NaN	NaN	NaN	0	0	Median	0.55322	0.66947	NaN	1	1	Median	0.62098	0.61184	64.145	3	3	Median	0.65083	0.67897	NaN	1	1	Median	680700000	456590000	224110000	0	0	0	288480000	205710000	82770000	238150000	147870000	90275000	154070000	103000000	51066000	6750	3686	6377	41994;41995;41996;41997;41998;41999	57065;57066;57067;57068;57069;57070	57069			6	
DAPIALK	1	Unmodified	726.42759	0.42759012	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	35.403	34.488	2	0.01496	31181	160511_QHF_FH_JSI12i_1	64.776	29.671			1.2662	1.1604	42.754	2	2	Median	1.0746	0.85765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4918	1.57	NaN	1	1	Median	61027000	30232000	30795000	25213000	11426000	13788000	0	0	0	0	0	0	35814000	18807000	17007000	6751	5138	6378	42000;42001	57071;57072	57071			2	
DAPLAVLR	0	Unmodified	853.50215	0.50215205	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		53.298	52.891	2	0.016626	47700	160511_QHF_FH_JSI10i_1	49.358	26.339			0.92556	0.95383	6.0367	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80428	0.91397	NaN	1	0	Median	1.0651	0.99543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46574000	23322000	23253000	0	0	0	22145000	11369000	10776000	24430000	11953000	12477000	0	0	0	6752	303	6379	42002;42003	57073	57073			1	
DAPPLLPSDTGQGYR	0	Unmodified	1585.7736	0.77363546	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		58.102	57.699	2	0.00025522	52359	160511_QHF_FH_JSI11i_1	83.314	68.438			0.70873	0.69666	34.045	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0042	1.1843	20.997	2	2	Median	0.70873	0.69666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122650000	65790000	56861000	0	0	0	78271000	39133000	39139000	44379000	26658000	17722000	0	0	0	6753	4900	6380	42004;42005;42006	57074;57075;57076;57077	57075			4	
DAPQDFHPDR	0	Unmodified	1196.521	0.52104959	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	5.2	7	4					3			4	5	3	2	21.496	19.19	2;3	2.9684E-08	16761	160511_QHF_FH_JSI12i_1	104.82	93.994			0.82972	0.86375	46.471	13	2	Median	0.82177	0.67135	69.393	4	1	Linear	0.63094	0.75608	9.6956	4	1	Median	0.82972	0.79835	11.528	3	0	Median	0.84397	0.91772	13.34	2	0	Median	2177200000	1098000000	1079200000	471980000	201160000	270820000	597650000	349000000	248650000	709360000	354870000	354490000	398160000	192940000	205220000	6754	1192	6381	42007;42008;42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019;42020	57078;57079;57080;57081;57082;57083;57084;57085;57086;57087;57088;57089;57090;57091;57092	57081			13	
DAPQDFHPDRVK	1	Unmodified	1423.6844	0.68442653	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	24.472	23.979	2;3	0.00012247	19708	160511_QHF_FH_JSI12i_3	62.732	57.126			0.88055	0.97108	27.299	4	1	Median	1.634	1.3959	NaN	1	1	Median	0.89548	1.0791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7933	0.80561	11.501	2	0	Median	287460000	149130000	138330000	37553000	13343000	24210000	63111000	34272000	28840000	0	0	0	186800000	101510000	85283000	6755	1192	6382	42021;42022;42023;42024;42025	57093;57094;57095;57096;57097;57098;57099;57100	57097			8	
DAPSLEEVEGHVADGSATEMGTTK	1	Unmodified	2430.0857	0.085663063	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.253	66.668	3	2.135E-16	59123	160511_QHF_FH_JSI9i_1	120.08	113.36			0.98544	1.0463	6.5714	4	0	Linear	1.1941	0.97767	NaN	1	0	Median	0.89166	1.0527	NaN	1	0	Median	0.94856	0.91142	NaN	1	0	Median	1.0238	1.038	NaN	1	0	Median	498560000	238100000	260460000	123840000	45584000	78260000	134000000	71403000	62595000	108620000	54892000	53724000	132100000	66224000	65879000	6756	2594	6383	42026;42027;42028;42029	57101;57102;57103;57104;57105	57105			5	
DAPTHLPSVDLSNPFTK	1	Unmodified	1837.921	0.92102798	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	81.499	80.586	3	0.01409	71094	160511_QHF_FH_JSI9i_2	39.385	30.102			0.91211	0.88893	36.469	2	1	Median	0.80617	0.68687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.032	1.1504	NaN	1	0	Median	57581000	27902000	29678000	28859000	15418000	13442000	0	0	0	0	0	0	28721000	12485000	16237000	6757	2984	6384	42030;42031	57106;57107	57107			2	
DAPVGEEEAPAK	1	Unmodified	1211.567	0.56699673	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	5.39	2				3						1	3	1	23.37	20.774	2	2.0791E-05	18119	160511_QHF_FH_JSI11i_1	116.13	103.09			2.9479	2.8473	39.993	3	3	Median	NaN	NaN	NaN	0	0	Median	4.01	4.6565	NaN	1	1	Median	2.5335	2.4504	21.232	2	2	Median	NaN	NaN	NaN	0	0	Median	177140000	52398000	124740000	0	0	0	70163000	17146000	53017000	106980000	35252000	71725000	0	0	0	6758	5239	6385	42032;42033;42034;42035;42036	57108;57109;57110;57111;57112	57108			5	
DAPWTASSSEK	1	Unmodified	1177.5251	0.52513192	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		28.835	28.566	2	0.00038756	25396	160511_QHF_FH_JSI10i_1	72.365	51.277			0.96226	1.0282	4.2344	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91537	1.0594	NaN	1	0	Median	1.0116	0.99786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	438270000	211710000	226560000	0	0	0	205700000	100370000	105330000	232570000	111340000	121230000	0	0	0	6759	2147	6386	42037;42038	57113;57114	57114			2	
DAQAEEEIK	1	Unmodified	1031.4771	0.47711909	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	3				3					1	2	2	1	19.013	15.155	2	4.8366E-06	13289	160511_QHF_FH_JSI10i_1	133.58	95.449			0.42896	0.39038	142.87	6	6	Median	0.5039	0.41115	NaN	1	1	Median	0.47218	0.5484	138.44	2	2	Median	1.434	1.3832	256.32	2	2	Median	0.36516	0.37066	NaN	1	1	Median	350660000	256150000	94510000	102260000	62823000	39438000	130440000	108780000	21662000	4538200	2077200	2461000	113420000	82471000	30949000	6760	2560	6387	42039;42040;42041;42042;42043;42044	57115;57116;57117;57118;57119;57120	57118			6	
DAQDAEAAMDGAELDGR	0	Unmodified	1733.7163	0.71625652	4375	Q9BRL6	SRSF8	Serine/arginine-rich splicing factor 8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.181	49.515	2	7.6825E-11	44980	160511_QHF_FH_JSI12i_1	105.03	95.341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6761	4375	6388	42045	57121	57121			1	
DAQDVQASQAEADQQQTR	0	Unmodified	1987.8831	0.88313893	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	20.168	19.7	2;3	2.278E-81	16720	160511_QHF_FH_JSI9i_1	244.67	236.07			1.6338	1.7361	63.943	10	9	Median	1.8994	1.5971	68.546	2	1	Median	0.9308	1.098	75.219	2	2	Median	1.6617	1.6128	59.119	3	3	Median	0.9014	0.94139	92.787	3	3	Plateau	690020000	331830000	358190000	108040000	47063000	60979000	149330000	81928000	67403000	206960000	85507000	121450000	225690000	117330000	108360000	6762	5213	6389	42046;42047;42048;42049;42050;42051;42052;42053;42054;42055	57122;57123;57124;57125;57126;57127;57128;57129;57130;57131;57132	57131			11	
DAQEFAADVR	0	Unmodified	1120.5149	0.51490158	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		38.503	38.171	2	0.0026029	33855	160511_QHF_FH_JSI9i_1	61.78	42.537			1.4857	1.5665	35.319	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6968	2.0109	NaN	1	1	Median	1.3009	1.2203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102750000	33414000	69333000	0	0	0	53121000	14911000	38210000	49625000	18503000	31123000	0	0	0	6763	1259	6390	42056;42057;42058	57133;57134;57135	57135			3	
DAQELYAAGENR	0	Unmodified	1335.6055	0.6055075	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.807	33.203	2	1.0511E-05	29846	160511_QHF_FH_JSI12i_1	145.91	137.07			0.53065	0.47188	27.49	4	4	Median	0.48786	0.39691	NaN	1	1	Median	0.30483	0.35631	NaN	1	1	Median	0.57718	0.56102	NaN	1	1	Median	0.59417	0.63481	NaN	1	1	Median	1288200000	758230000	529970000	301150000	194560000	106590000	347680000	213460000	134220000	379670000	205610000	174050000	259710000	144600000	115100000	6764	1723	6391	42059;42060;42061;42062	57136;57137;57138;57139	57137			4	
DAQEMADSLGVR	0	Unmodified	1290.5874	0.5874146	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	51.765	50.986	2	7.0111E-07	46121	160511_QHF_FH_JSI12i_1	104.82	80.794			1.5086	1.5838	80.939	5	5	Median	0.79256	0.65285	125.34	2	2	Median	1.5086	1.7622	NaN	1	1	Median	1.6698	1.6433	NaN	1	1	Median	1.5053	1.5756	NaN	1	1	Median	882610000	443490000	439130000	298800000	150780000	148020000	156270000	88274000	67992000	193370000	106810000	86560000	234170000	97620000	136550000	6765	454	6392	42063;42064;42065;42066;42067;42068	57140;57141;57142;57143;57144;57145	57142			6	
DAQEQYNK	1	Unmodified	994.43559	0.43558863	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	1	2	3	6.7888	3.5078	2	5.6187E-09	4179	160511_QHF_FH_JSI12i_1	155.38	120.23			0.89443	0.93097	27.816	7	2	Median	1.2925	1.0562	NaN	1	0	Median	0.89443	1.0626	NaN	1	0	Median	0.90472	0.8681	9.8882	2	0	Median	0.76869	0.80391	45.03	3	2	Median	547200000	298830000	248370000	58594000	24320000	34274000	177030000	91507000	85524000	150890000	82409000	68481000	160680000	100590000	60089000	6766	432	6393	42069;42070;42071;42072;42073;42074;42075	57146;57147;57148;57149;57150;57151;57152;57153;57154;57155;57156	57151			11	
DAQFYCELNYR	0	Unmodified	1477.6296	0.62961376	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	60.685	60.031	2	0.0091506	54546	160511_QHF_FH_JSI12i_1	58.676	42.045			4.242	4.3554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.242	4.3554	NaN	1	1	Median	18936000	5438500	13498000	0	0	0	0	0	0	0	0	0	18936000	5438500	13498000	6767	1554	6394	42076	57157	57157			1	
DAQGPDDAK	1	Unmodified	915.39339	0.39338946	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.5	5.5	2				2							2	2	5.5651	-1.643	2	0.00038973	3070	160511_QHF_FH_JSI12i_1	85.676	52.747			0.84608	0.86809	3.3093	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92911	0.88865	NaN	1	0	Median	0.77046	0.84801	NaN	1	0	Median	4259200	2203200	2056000	0	0	0	0	0	0	2143300	1011100	1132200	2115900	1192200	923780	6768	4988	6395	42077;42078;42079;42080	57158;57159;57160;57161;57162	57161			5	
DAQGQPGLER	0	Unmodified	1069.5152	0.51523593	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			13.569	13.331	2	0.0049449	10942	160511_QHF_FH_JSI10i_1	80.986	64.21			0.94822	1.1301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94822	1.1301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63779000	42182000	21597000	0	0	0	63779000	42182000	21597000	0	0	0	0	0	0	6769	235	6396	42081	57163	57163			0	
DAQIAMMQQR	0	Unmodified	1190.5536	0.55361205	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	36.249	35.826	2	2.5986E-06	32416	160511_QHF_FH_JSI12i_1	119.21	83.916			0.75116	0.74622	18.625	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87666	0.85126	NaN	1	1	Median	0.64363	0.65414	NaN	1	1	Median	201700000	112020000	89677000	0	0	0	0	0	0	88509000	47479000	41029000	113190000	64543000	48647000	6770	2587	6397	42082;42083	57164;57165	57165			2	
DAQIFIQK	1	Unmodified	961.52328	0.52328142	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	2	1	1	49.814	44.769	2	0.0032327	39666	160511_QHF_FH_JSI9i_1	80.229	17.571			4.296	5.0683	25.997	4	4	Median	4.0199	3.285	NaN	1	1	Median	4.296	5.0683	6.2517	2	2	Median	NaN	NaN	NaN	0	0	Median	5.5914	5.9984	NaN	1	1	Median	184210000	48492000	135720000	90835000	21982000	68853000	91780000	26417000	65363000	0	0	0	1593200	92210	1501000	6771	800	6398	42084;42085;42086;42087;42088	57166;57167;57168;57169;57170	57168			5	
DAQIFIQKK	2	Acetyl (K)	1131.6288	0.62880913	800	P04040	CAT	Catalase	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	63.181	53.966	2	0.030804	28052	160513_QHF_FH_JSI12Kac_3	61.962	18.155			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2490000	0	2490000	0	0	0	0	0	0	0	0	0	2490000	0	2490000	6772	800	6399	42089	57171	57171			1	
DAQLSAPTK	1	Unmodified	929.48181	0.48181054	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		18.856	18.667	2	0.010905	15780	160511_QHF_FH_JSI11i_1	49.418	24.495			1.0648	1.1409	5.1105	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0015	1.1828	NaN	1	0	Median	1.1321	1.1004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288590000	136290000	152310000	0	0	0	143810000	73296000	70516000	144780000	62992000	81789000	0	0	0	6773	1183	6400	42090;42091	57172;57173	57172			2	
DAQNSSDSSFEK	1	Unmodified	1313.5372	0.53715317	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.356	12.226	2	7.8783E-05	9843	160511_QHF_FH_JSI11i_1	105.46	68.904			2.2009	2.1263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2009	2.1263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19255000	4391000	14864000	0	0	0	0	0	0	19255000	4391000	14864000	0	0	0	6774	3133	6401	42092;42093;42094	57174;57175;57176	57174			3	
DAQPSFSAEDIAK	1	Unmodified	1377.6412	0.64122431	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.65	5				4	3				2	3	3	4	55.918	50.004	2	1.8383E-09	44455	160511_QHF_FH_JSI9i_1	108.7	86.611			0.93983	0.9308	19.367	10	0	Median	1.0802	0.88341	NaN	1	0	Median	0.84538	1.001	26.876	3	0	Plateau	0.9432	0.9182	5.6534	3	0	Median	1.0329	1.1105	12.85	3	0	Median	1706900000	822810000	884100000	378780000	158330000	220440000	492210000	268460000	223750000	437800000	209390000	228410000	398120000	186630000	211500000	6775	1254	6402	42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106	57177;57178;57179;57180;57181;57182;57183;57184;57185;57186;57187;57188;57189;57190;57191;57192	57188			16	
DAQQDLNLDIEK	1	Unmodified	1400.6783	0.6783381	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.452	53.79	2	0.00028903	48963	160511_QHF_FH_JSI12i_1	91.313	64.871			0.32827	0.34174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32827	0.34174	NaN	1	1	Median	19899000	15047000	4851700	0	0	0	0	0	0	0	0	0	19899000	15047000	4851700	6776	1660	6403	42107	57193	57193			1	
DAQQSSSPAADNLR	0	Unmodified	1458.6699	0.66989867	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	17.909	17.3	2	9.9261E-13	14795	160511_QHF_FH_JSI12i_1	119.45	99.145			1.2332	1.0862	14.869	2	2	Median	1.2047	0.97781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2624	1.2066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42387000	16811000	25576000	20927000	8693600	12233000	0	0	0	21461000	8117200	13343000	0	0	0	6777	2497	6404	42108;42109;42110;42111;42112	57194;57195;57196;57197;57198	57196			5	
DAQQVEPEGQEK	1	Unmodified	1356.6157	0.61573784	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	4.21	8			1	1					2	2	4	2	13.88	12.675	2	8.2932E-06	10502	160511_QHF_FH_JSI12i_1	124.42	75.122			0.97059	1.0171	48.609	8	8	Median	1.1114	0.92121	75.464	2	2	Median	0.94337	1.1053	57.205	2	2	Median	1.0737	1.0523	62.844	2	2	Median	0.91003	0.94216	56.263	2	2	Median	755650000	374990000	380660000	173820000	73561000	100260000	187890000	105620000	82272000	205430000	95879000	109550000	188500000	99928000	88575000	6778	5646	6405	42113;42114;42115;42116;42117;42118;42119;42120;42121;42122	57199;57200;57201;57202;57203;57204;57205;57206;57207;57208	57202			10	
DAQSPDESK	1	Unmodified	975.41452	0.41451884	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	4.64	1			1	2							2	2	5.391	-1.9222	2	0.00050258	2839	160511_QHF_FH_JSI12i_1	83.783	55.565			1.0335	0.99435	8.9472	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0992	1.0558	8.4781	2	0	Median	0.86511	0.94105	NaN	1	0	Median	6298400	2972900	3325500	0	0	0	0	0	0	4576700	2136700	2440000	1721700	836220	885510	6779	2789	6406	42123;42124;42125;42126	57209;57210;57211	57210			3	
DAQVPIILAVNK	1	Unmodified	1279.75	0.7499869	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	77.078	76.735	2	4.7082E-05	69896	160511_QHF_FH_JSI12i_1	99.815	91.283			1.1234	1.1591	21.516	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.4918	1.6543	NaN	1	1	Median	1.1801	1.1228	NaN	1	0	Median	1.0847	1.1591	NaN	1	0	Median	63447000	25358000	38089000	0	0	0	19208000	6446600	12762000	21842000	8680900	13161000	22397000	10231000	12167000	6780	1584	6407	42127;42128;42129	57212;57213;57214;57215;57216	57214			5	
DAQVVQVVLDGLSNILK	1	Unmodified	1810.02	0.020013746	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	2.68	3	15	8						1	4	8	7	8	104.5	104.22	2;3	2.6602E-23	92191	160511_QHF_FH_JSI11i_2	218.5	191.82			0.58659	0.6443	83.215	18	17	Median	0.34503	0.30502	102.49	3	3	Plateau	0.29434	0.35944	46.815	4	4	Linear	0.55935	0.56222	85.142	5	4	Median	0.75493	0.82105	108.14	6	6	Median	393320000	239810000	153500000	52988000	30964000	22025000	115520000	86187000	29338000	134570000	71414000	63161000	90228000	51248000	38980000	6781	158	6408	42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151;42152;42153;42154;42155;42156	57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244	57235			28	
DASAAEPAAAER	0	Unmodified	1157.5313	0.53127993	5312	Q9UHR6	ZNHIT2	Zinc finger HIT domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		13.87	13.322	2	0.00012374	10839	160511_QHF_FH_JSI11i_1	102.06	78.633			3.0953	2.7131	63.002	2	2	Median	2.1326	1.7378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.4924	4.2359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58758000	13812000	44946000	35456000	7384000	28072000	0	0	0	23302000	6427800	16875000	0	0	0	6782	5312	6409	42157;42158	57245;57246	57245			2	
DASDDLDDLNFFNQK	1	Unmodified	1755.7588	0.75877326	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										1	3	2	89.254	88.903	2	2.7572E-15	80912	160511_QHF_FH_JSI12i_1	167.18	157.75			1.0477	1.1874	19.194	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0477	1.1874	NaN	1	0	Median	1.0444	1.015	31.672	2	2	Median	1.0963	1.1275	16.522	2	1	Median	128100000	60510000	67591000	0	0	0	31901000	15525000	16376000	58019000	28570000	29450000	38182000	16416000	21766000	6783	1169	6410	42159;42160;42161;42162;42163;42164	57247;57248;57249;57250;57251;57252;57253	57250			7	
DASGNKVK	2	Acetyl (K)	859.43995	0.43994572	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.4					4	1					2	2	1	8.3072	1.0325	2	0.00059413	2818	160513_QHF_FH_JSI12Kac_2	114.28	55.3			0.76237	0.85494	23.158	5	0	Median	NaN	NaN	NaN	0	0	Median	0.8219	0.96757	17.502	2	0	Median	0.75153	0.72699	31.961	2	0	Median	0.76237	0.84289	NaN	1	0	Median	191760000	107540000	84220000	0	0	0	66535000	39905000	26630000	46736000	25067000	21669000	78485000	42564000	35921000	6784	775	6411	42165;42166;42167;42168;42169	57254;57255;57256;57257;57258	57258	391		5	
DASGQPIFNASAK	1	Unmodified	1304.6361	0.63607935	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.669	37.453	2	0.0001451	32986	160511_QHF_FH_JSI9i_1	84.309	54.535			1.2127	0.9979	NaN	1	0	Median	1.2127	0.9979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93273000	44176000	49098000	93273000	44176000	49098000	0	0	0	0	0	0	0	0	0	6785	264	6412	42170	57259	57259			1	
DASIVGFFDDSFSEAHSEFLK	1	Unmodified	2347.0645	0.064457335	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.85	3	8	3						4	4	5	5	4	100.43	98.482	2;3	5.1248E-186	89397	160511_QHF_FH_JSI11i_2	314.55	291.07			1.0066	0.99237	21.613	18	5	Median	1.033	1.0645	13.548	4	0	Linear	0.60285	0.71947	18.638	5	1	Median	1.0486	1.0449	6.2993	5	2	Median	0.90168	0.97629	19.044	4	2	Median	11471000000	6097500000	5373200000	1703800000	861880000	841930000	2928800000	1821700000	1107100000	3997800000	1960200000	2037600000	2840400000	1453800000	1386500000	6786	1344	6413	42171;42172;42173;42174;42175;42176;42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188	57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288	57279			29	
DASLMVTNDGATILK	1	Unmodified	1547.7865	0.78650834	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.996	6		5							3	4	2	2	72.581	71.71	2;3	3.9541E-52	64910	160511_QHF_FH_JSI10i_1	221.6	194.71			1.2099	1.1339	53	10	6	Median	1.2203	0.99735	22.818	3	2	Median	1.1228	1.3035	61.682	4	3	Median	1.1997	1.1574	NaN	1	0	Median	1.8028	1.906	82.262	2	1	Median	3852300000	1872900000	1979400000	718340000	325800000	392540000	1187900000	646210000	541710000	918210000	416940000	501270000	1027800000	483930000	543850000	6787	2090	6414	42189;42190;42191;42192;42193;42194;42195;42196;42197;42198;42199	57289;57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301;57302;57303;57304	57297			16	
DASLMVTNDGATILK	1	Oxidation (M)	1563.7814	0.78142296	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	63.228	62.648	2	1.3013E-09	57046	160511_QHF_FH_JSI12i_1	147.24	120.73			0.90202	0.91674	25.975	5	2	Median	1.0277	0.88355	NaN	1	0	Median	0.64173	0.76166	47.691	2	2	Median	0.94055	0.91674	NaN	1	0	Median	0.89244	0.94466	NaN	1	0	Median	274680000	151190000	123490000	37034000	16297000	20738000	119530000	73079000	46449000	58316000	30337000	27979000	59801000	31476000	28325000	6788	2090	6414	42200;42201;42202;42203;42204	57305;57306;57307;57308;57309;57310	57306		1747	5	
DASLQPR	0	Unmodified	785.40317	0.40316629	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.718	11.463	2	0.0050968	9125	160511_QHF_FH_JSI11i_1	104.11	43.753			1.5444	1.7993	21.787	3	3	Median	NaN	NaN	NaN	0	0	Median	1.5444	1.7993	NaN	1	1	Median	1.9802	1.8845	NaN	1	1	Median	1.2514	1.2653	NaN	1	1	Median	546640000	179700000	366940000	0	0	0	210600000	67329000	143270000	154450000	50335000	104110000	181590000	62032000	119560000	6789	5644	6415	42205;42206;42207	57311;57312;57313	57311			3	
DASLVFK	1	Unmodified	778.4225	0.42250475	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		45.822	44.874	2	0.010534	40563	160511_QHF_FH_JSI11i_1	74.415	18.974			0.55447	0.49343	4.1523	2	0	Median	0.58364	0.47915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52675	0.50813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65039000	31833000	33206000	36371000	16258000	20112000	0	0	0	28668000	15575000	13093000	0	0	0	6790	1945	6416	42208;42209;42210	57314;57315	57314			2	
DASLVVTTSGDHK	1	Unmodified	1328.6572	0.65720872	2464	Q13685	AAMP	Angio-associated migratory cell protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	27.528	27.216	2	2.7917E-09	24390	160511_QHF_FH_JSI12i_1	104.79	85.524			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18565000	18565000	0	0	0	0	18565000	18565000	0	0	0	0	0	0	0	6791	2464	6417	42211;42212	57316;57317	57316			2	
DASNWSTDK	1	Unmodified	1022.4305	0.43050325	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	3	2	3	18.714	15.98	2	5.2576E-06	13819	160511_QHF_FH_JSI11i_1	116.37	66.782			1.2222	1.0355	77.718	9	4	Median	1.2222	1.0103	NaN	1	0	Median	0.87757	1.0355	135.86	3	1	Median	1.0741	1.0341	22.259	2	0	Median	0.95154	0.99101	62.303	3	3	Plateau	927890000	470290000	457600000	99329000	42791000	56538000	261620000	105990000	155630000	171510000	84206000	87303000	395440000	237300000	158130000	6792	694	6418	42213;42214;42215;42216;42217;42218;42219;42220;42221	57318;57319;57320;57321;57322;57323;57324;57325;57326;57327	57318			10	
DASNWSTDKLK	2	Acetyl (K)	1305.6201	0.62009493	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		57.993	48.393	2	0.00013451	25801	160513_QHF_FH_JSI11Kac_3	94.616	94.616			0.024956	0.023664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.024956	0.023664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2667700	2619100	48531	0	0	0	0	0	0	2667700	2619100	48531	0	0	0	6793	694	6419	42222	57328	57328	348		1	
DASPNQVAEK	1	Unmodified	1057.504	0.50400254	330	O43402	EMC8	ER membrane protein complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					2	2	1	1	12.593	10.818	2	8.2863E-11	9128	160511_QHF_FH_JSI10i_1	142.56	126.1			0.97068	0.99027	25.364	5	2	Median	1.0004	0.82137	NaN	1	1	Median	0.64488	0.7439	40.456	2	1	Median	1.0258	1.002	NaN	1	0	Median	0.97068	1.0112	NaN	1	0	Median	559920000	279000000	280920000	138970000	60319000	78646000	144880000	80982000	63902000	122830000	59044000	63784000	153250000	78657000	74589000	6794	330	6420	42223;42224;42225;42226;42227;42228	57329;57330;57331;57332;57333;57334;57335;57336	57333			8	
DASSTYSQVENLNR	0	Unmodified	1582.7223	0.72232817	5276	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.347	41.88	2	3.4921E-21	37864	160511_QHF_FH_JSI11i_1	169.52	159.83			0.85866	0.93521	1.1357	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81573	0.92904	NaN	1	0	Median	0.9576	0.93521	NaN	1	0	Median	0.85866	0.91474	NaN	1	1	Median	145050000	67399000	77649000	0	0	0	29763000	14606000	15157000	54440000	26012000	28428000	60845000	26781000	34063000	6795	5276	6421	42229;42230;42231;42232	57337;57338;57339;57340;57341	57337			5	
DASTLGLSQIK	1	Unmodified	1131.6136	0.61355299	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.17	52.506	2	0.0039526	47756	160511_QHF_FH_JSI12i_1	66.595	50.714			2.1097	2.1173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1097	2.1173	NaN	1	1	Median	17206000	6923900	10282000	0	0	0	0	0	0	0	0	0	17206000	6923900	10282000	6796	4936	6422	42233	57342	57342			1	
DASVPLIDVTNLPTPR	0	Unmodified	1706.9203	0.9202997	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	93.16	92.78	2	9.7259E-05	84318	160511_QHF_FH_JSI11i_1	95.401	78.375			0.92437	0.89634	21.51	7	6	Median	1.163	0.9419	33.489	2	2	Median	0.70677	0.7876	18.29	2	2	Median	1.2521	1.1852	NaN	1	0	Median	0.86536	0.89825	13.35	2	2	Median	144580000	70579000	74003000	41549000	19122000	22427000	38531000	24095000	14435000	25097000	9331700	15766000	39405000	18030000	21374000	6797	3962	6423	42234;42235;42236;42237;42238;42239;42240	57343;57344;57345;57346;57347;57348;57349;57350	57343			8	
DATGAEEEAPWAATER	0	Unmodified	1702.7435	0.74345755	3410	Q8IVS2	MCAT	Malonyl-CoA-acyl carrier protein transacylase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.153	49.487	2	8.6917E-17	44956	160511_QHF_FH_JSI12i_1	123.02	64.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6798	3410	6424	42241	57351	57351			1	
DATIASLEETNR	0	Unmodified	1318.6365	0.63647328	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				2	1	2	1	47.47	43.706	2	4.6224E-05	38822	160511_QHF_FH_JSI9i_1	116.77	104.54			1.1765	1.2317	54.842	6	3	Median	1.548	1.2793	47.161	2	1	Median	1.245	1.4707	NaN	1	0	Median	0.84731	0.81539	98.431	2	1	Median	1.0039	1.0314	NaN	1	1	Median	362610000	160390000	202230000	151150000	67246000	83905000	110010000	49033000	60976000	4885800	2299700	2586100	96569000	41807000	54762000	6799	475	6425	42242;42243;42244;42245;42246;42247	57352;57353;57354;57355;57356;57357;57358;57359	57357			7	
DATLLIHEATLEDGLEEEAVEK	1	Unmodified	2424.1908	0.19078006	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0		By MS/MS			1.5	0.5	1	1									2			92.95	92.757	3	1.8132E-05	84198	160511_QHF_FH_JSI10i_1	62.064	53.877			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6800	4348	6426	42248;42249	57360;57361	57360			2	
DATLLLWYWNGK	1	Unmodified	1478.7558	0.75580056	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	96.233	86.812	2	1.7884E-11	49261	160513_QHF_FH_JSI11Kac_6	163.16	140.47			0.4623	0.47281	22.452	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56662	0.55416	NaN	1	1	Median	0.37718	0.40341	NaN	1	1	Median	69023000	44639000	24384000	0	0	0	0	0	0	40549000	23000000	17549000	28474000	21639000	6834600	6801	1718	6427	42250;42251	57362;57363	57362			2	
DATLTALDR	0	Unmodified	974.50327	0.50327426	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	1	1	3	43.249	38.779	2	0.00023016	34509	160511_QHF_FH_JSI9i_1	99.802	33.12			0.86238	0.92625	51.034	7	4	Median	1.6228	1.352	104.41	2	2	Median	0.78287	0.91669	NaN	1	0	Median	1.1646	1.121	NaN	1	0	Median	0.86238	0.92625	33.471	3	2	Median	1006200000	481880000	524330000	353210000	113780000	239420000	4427100	2460800	1966300	7166100	3291200	3874900	641410000	362340000	279070000	6802	1507	6428	42252;42253;42254;42255;42256;42257;42258	57364;57365;57366;57367;57368;57369;57370;57371;57372	57369			9	
DATNDQVTK	1	Unmodified	990.4618	0.46180338	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	4.89	5	2	2	4	3					3	5	4	4	7.5873	3.1374	2	1.1779E-06	4637	160511_QHF_FH_JSI10i_1	134.05	102.75			0.90396	0.96855	37.385	12	4	Median	NaN	NaN	NaN	0	0	Median	0.92568	1.088	56.308	4	2	Median	0.88662	0.85613	30.43	4	1	Median	0.90996	0.96855	17.336	4	1	Median	4147100000	2481900000	1665200000	0	0	0	1428800000	934430000	494360000	1648100000	944310000	703830000	1070200000	603120000	467030000	6803	576	6429	42259;42260;42261;42262;42263;42264;42265;42266;42267;42268;42269;42270;42271;42272;42273;42274	57373;57374;57375;57376;57377;57378;57379;57380;57381;57382;57383;57384;57385;57386;57387;57388;57389	57377			17	
DATNTGIK	1	Unmodified	818.4134	0.41339662	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.83	5.21	2		1		3					2		1	3	9.5388	6.3066	2	0.0026091	3534	160513_QHF_FH_JSI12Kac_2	89.296	33.174			1.0166	1.0547	57.027	5	5	Median	1.1398	0.9351	68.824	2	2	Median	NaN	NaN	NaN	0	0	Median	2.2004	2.0414	NaN	1	1	Median	0.74933	0.77838	42.963	2	2	Median	1157000000	447980000	709030000	652810000	201320000	451490000	0	0	0	3668400	1624000	2044400	500530000	245040000	255490000	6804	1712	6430	42275;42276;42277;42278;42279;42280	57390;57391;57392;57393;57394;57395	57394			6	
DATNVAAAFEEAVR	0	Unmodified	1462.7052	0.70522155	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	82.62	82.153	2;3	4.101E-11	73100	160511_QHF_FH_JSI9i_1	155.02	126.29			0.70545	0.69587	30.656	8	6	Median	0.74734	0.63539	32.885	2	1	Median	0.82493	0.98264	46.973	2	2	Median	0.70545	0.67187	3.1327	2	1	Median	0.61084	0.64022	25.743	2	2	Median	316450000	176000000	140450000	63805000	29244000	34561000	118380000	66558000	51820000	74590000	42697000	31893000	59681000	37501000	22180000	6805	1729	6431	42281;42282;42283;42284;42285;42286;42287;42288	57396;57397;57398;57399;57400;57401;57402;57403;57404;57405	57404			10	
DATNVAAAFEEAVRR	0	Unmodified	1618.8063	0.80633258	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	1	3	5	75.647	75.068	2;3	2.7547E-10	66672	160511_QHF_FH_JSI10i_2	144.68	88.109			1.1046	1.1729	41.581	9	3	Median	1.78	1.5293	NaN	1	0	Median	0.94892	1.1729	NaN	1	0	Median	1.3613	1.3121	15.109	3	1	Plateau	1.0911	1.1193	63.95	4	2	Median	1075200000	432580000	642580000	136440000	36933000	99503000	181640000	88682000	92959000	483610000	198260000	285350000	273480000	108700000	164770000	6806	1729	6432	42289;42290;42291;42292;42293;42294;42295;42296;42297;42298	57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419;57420	57416			15	
DATNVGDEGGFAPNILENK	1	Unmodified	1959.9174	0.91739917	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.06	16	6	10		7	8				10	15	9	13	72.053	68.446	2;3	3.134E-267	64324	160511_QHF_FH_JSI9i_1	363.68	353.07			1.0168	0.96766	28.027	43	18	Median	1.0938	0.93535	15.578	9	2	Median	0.84563	1.0025	22.819	13	6	Median	1.0317	1.0069	16.077	8	3	Median	0.91323	0.98578	42.238	13	7	Median	69398000000	33880000000	35518000000	13281000000	5327400000	7953100000	18856000000	9652900000	9203100000	18075000000	8844700000	9230600000	19186000000	10055000000	9131100000	6807	854	6433	42299;42300;42301;42302;42303;42304;42305;42306;42307;42308;42309;42310;42311;42312;42313;42314;42315;42316;42317;42318;42319;42320;42321;42322;42323;42324;42325;42326;42327;42328;42329;42330;42331;42332;42333;42334;42335;42336;42337;42338;42339;42340;42341;42342;42343;42344;42345	57421;57422;57423;57424;57425;57426;57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437;57438;57439;57440;57441;57442;57443;57444;57445;57446;57447;57448;57449;57450;57451;57452;57453;57454;57455;57456;57457;57458;57459;57460;57461;57462;57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473;57474;57475;57476;57477;57478;57479;57480;57481;57482;57483;57484;57485;57486;57487;57488;57489;57490;57491;57492;57493;57494;57495;57496;57497;57498;57499;57500;57501;57502;57503;57504;57505;57506;57507;57508;57509;57510;57511;57512;57513;57514;57515	57479			95	
DATNVGDEGGFAPNILENKEGLELLK	2	Unmodified	2742.3712	0.37120404	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1.67	0.471	1	2								1	2			97.731	97.653	3	2.9858E-06	85677	160511_QHF_FH_JSI9i_2	60.464	54.845			0.32989	0.33557	16.626	2	2	Median	0.33978	0.29835	NaN	1	1	Median	0.32028	0.37744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36791000	32816000	3975000	12603000	10952000	1651500	24188000	21864000	2323500	0	0	0	0	0	0	6808	854	6434	42346;42347;42348	57516;57517;57518	57517			3	
DATQITQGPR	0	Unmodified	1085.5465	0.54653606	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	4.89	2				2	5				1	3	2	3	25.275	19.508	2	6.516E-10	17404	160511_QHF_FH_JSI11i_1	138.4	120.41			0.75487	0.78886	32.565	8	4	Median	1.1693	0.92517	NaN	1	0	Median	0.49375	0.57075	14.529	2	2	Median	0.91308	0.89936	18.558	2	0	Median	0.71332	0.78896	43.995	3	2	Median	2664100000	1298400000	1365700000	1023000000	489990000	532990000	4814000	3057500	1756500	1624800000	799420000	825380000	11473000	5921400	5551200	6809	1388	6435	42349;42350;42351;42352;42353;42354;42355;42356;42357	57519;57520;57521;57522;57523;57524;57525;57526;57527;57528	57519			10	
DATSRPTDNILIPQLIR	0	Unmodified	1922.0585	0.058524517	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.555	2	9	2							2	3	5	3	83.174	82.619	2;3	1.7523E-06	71625	160511_QHF_FH_JSI12i_3	111.92	100.65			0.94043	0.96732	11.555	13	1	Median	1.1625	1.0128	0.58264	2	0	Median	0.74408	0.90659	8.988	3	0	Plateau	1.0215	0.96732	12.205	5	1	Median	0.92363	0.97988	7.173	3	0	Median	850930000	437070000	413860000	121260000	62561000	58699000	165550000	100210000	65344000	351760000	171630000	180130000	212350000	102660000	109690000	6810	5285	6436	42358;42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370	57529;57530;57531;57532;57533;57534;57535;57536;57537;57538;57539;57540;57541;57542;57543	57543			15	
DATYTSAR	0	Unmodified	883.40356	0.40356022	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0			By MS/MS	By matching	13	0						2						1	1	10.116	2.9238	2	0.0089452	4238	160513_QHF_FH_JSI11Kac_3	69.905	52.941			0.91985	0.94699	0.71228	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9672	0.94224	NaN	1	0	Median	0.87482	0.95178	NaN	1	0	Median	13438000	6691300	6747100	0	0	0	0	0	0	9348800	4692500	4656300	4089600	1998800	2090800	6811	1411	6437	42371;42372	57544	57544			1	
DAVDKLLK	2	Acetyl (K)	942.5386	0.53859714	1268	P25815	S100P	Protein S100-P	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		66.426	56.889	2	0.033124	28823	160513_QHF_FH_JSI10Kac_3	55.37	36.588			0.5704	0.61727	97.254	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0479	1.2278	NaN	1	0	Median	0.31047	0.31032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9781000	6182700	3598200	0	0	0	4375300	2177300	2197900	5405700	4005400	1400300	0	0	0	6812	1268	6438	42373;42374	57545;57546	57546			2	
DAVDLMK	1	Unmodified	790.38949	0.38949006	3354	Q86WA6	BPHL	Valacyclovir hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.968	36.356	2	0.020341	32887	160511_QHF_FH_JSI12i_1	60.76	25.936			0.47662	0.47986	32.849	4	4	Median	0.38727	0.32748	NaN	1	1	Median	0.62093	0.72291	NaN	1	1	Median	0.53784	0.51503	NaN	1	1	Median	0.42237	0.44709	NaN	1	1	Median	169720000	97973000	71744000	30037000	18460000	11577000	50360000	26355000	24005000	48649000	27573000	21077000	40670000	25585000	15085000	6813	3354	6439	42375;42376;42377;42378	57547;57548;57549;57550	57548			4	
DAVDLMKALK	2	Acetyl (K)	1144.6162	0.61619553	3354	Q86WA6	BPHL	Valacyclovir hydrolase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.5	0.5						3	3				4		2	83.595	74.206	2	8.432E-05	38303	160513_QHF_FH_JSI12Kac_4	102.61	77.05			0.54156	0.59253	159.45	6	5	Median	NaN	NaN	NaN	0	0	Median	0.95608	1.0749	199	4	4	Median	NaN	NaN	NaN	0	0	Median	0.54156	0.59253	47.292	2	1	Median	28236000	14747000	13489000	0	0	0	17365000	9288100	8077000	0	0	0	10871000	5458800	5411700	6814	3354	6440	42379;42380;42381;42382;42383;42384	57551;57552;57553;57554;57555;57556;57557	57555	2854		7	
DAVDWVHYK	1	Unmodified	1131.5349	0.53490874	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.867	48.346	3	0.0038333	41802	160511_QHF_FH_JSI11i_2	52.579	47.48			0.60725	0.61004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60725	0.61004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33948000	20197000	13752000	0	0	0	0	0	0	33948000	20197000	13752000	0	0	0	6815	1690	6441	42385	57558	57558			1	
DAVEQQGEVK	1	Unmodified	1101.5302	0.5302173	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	1	3	13.413	10.079	2	1.276E-06	9145	160511_QHF_FH_JSI12i_1	128.38	77.037			1.3091	1.3297	23.025	7	7	Median	1.408	1.149	NaN	1	1	Median	1.4962	1.7158	18.584	2	2	Median	1.3364	1.2907	NaN	1	1	Median	1.3091	1.3308	20.96	3	3	Plateau	424400000	213590000	210820000	102530000	41368000	61158000	128050000	78571000	49484000	77395000	38491000	38905000	116430000	55158000	61271000	6816	5095	6442	42386;42387;42388;42389;42390;42391;42392	57559;57560;57561;57562;57563;57564;57565	57560			7	
DAVFIPAGWDNEK	1	Unmodified	1460.6936	0.69359423	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.765	76.286	2	1.7332E-07	69225	160511_QHF_FH_JSI11i_1	138.99	131.35			1.1678	1.212	20.288	4	1	Linear	1.1786	0.97986	NaN	1	0	Median	0.69796	0.81328	NaN	1	1	Median	1.157	1.1278	NaN	1	0	Median	1.2743	1.309	NaN	1	0	Median	385890000	166490000	219410000	79565000	28290000	51275000	105630000	52686000	52942000	99572000	42695000	56877000	101130000	42814000	58313000	6817	312	6443	42393;42394;42395;42396;42397	57566;57567;57568;57569;57570;57571	57566			6	
DAVFLAER	0	Unmodified	919.47633	0.47633123	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	45.372	44.59	2	0.0079495	40307	160511_QHF_FH_JSI11i_1	67.993	23.546			0.82223	0.79954	59.399	5	5	Median	0.83138	0.68882	69.662	2	2	Median	0.85611	1.014	NaN	1	1	Median	0.82223	0.79954	NaN	1	1	Median	0.27728	0.28509	NaN	1	1	Median	208690000	114880000	93809000	59769000	31737000	28032000	58895000	23948000	34947000	58990000	38296000	20694000	31033000	20896000	10137000	6818	1347	6444	42398;42399;42400;42401;42402	57572;57573;57574;57575;57576	57572			5	
DAVIQDLER	0	Unmodified	1057.5404	0.54038805	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	47.564	46.906	2	0.003125	42617	160511_QHF_FH_JSI12i_1	61.691	48.112			1.8329	1.8681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8329	1.8681	NaN	1	0	Median	32448000	13720000	18728000	0	0	0	0	0	0	0	0	0	32448000	13720000	18728000	6819	3805	6445	42403;42404	57577;57578;57579	57578			3	
DAVIQDLERK	1	Unmodified	1185.6354	0.63535107	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		3										1	2	42.113	40.737	2;3	0.0030143	34866	160511_QHF_FH_JSI12i_2	53.237	28.946			0.96312	1.058	64.52	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96312	1.058	64.52	2	2	Median	61801000	33409000	28392000	0	0	0	0	0	0	0	0	0	61801000	33409000	28392000	6820	3805	6446	42405;42406;42407	57580;57581;57582	57581			3	
DAVITVPVFFNQAER	0	Unmodified	1704.8835	0.88352026	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.18	0.386	9	2								3	4	2	2	98.039	97.906	2;3	1.7309E-15	88916	160511_QHF_FH_JSI11i_1	168.02	146.62			1.0488	1.1777	21.81	8	4	Median	2.12	1.8305	NaN	1	1	Median	0.9364	1.1052	15.029	4	3	Median	1.1865	1.1437	26.516	2	0	Median	1.1465	1.1862	NaN	1	0	Median	497770000	230780000	266990000	5934400	2507600	3426800	236420000	107670000	128740000	137080000	62595000	74486000	118340000	58003000	60333000	6821	5633	6447	42408;42409;42410;42411;42412;42413;42414;42415;42416;42417;42418	57583;57584;57585;57586;57587;57588;57589;57590;57591;57592;57593;57594;57595;57596;57597	57584			15	
DAVITVPVFFNQAERR	0	Unmodified	1860.9846	0.98463129	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		86.842	86.291	3	0.0002525	75975	160511_QHF_FH_JSI11i_2	58.079	46.703			1.1057	1.0522	63.696	5	1	Median	1.1385	1.0019	NaN	1	0	Median	0.97774	1.1681	14.782	2	1	Median	0.6044	0.5776	103.61	2	0	Median	NaN	NaN	NaN	0	0	Median	156410000	94593000	61813000	30483000	14008000	16475000	64603000	33961000	30642000	61321000	46625000	14697000	0	0	0	6822	5633	6448	42419;42420;42421;42422;42423	57598;57599;57600;57601;57602	57601			5	
DAVLDFVK	1	Unmodified	905.48583	0.48583328	4123	Q96II8	LRCH3	Leucine-rich repeat and calponin homology domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	66.622	65.999	2	0.0064048	60068	160511_QHF_FH_JSI12i_1	71.501	43.976			1.1899	1.2461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1899	1.2461	NaN	1	1	Median	20363000	10708000	9654400	0	0	0	0	0	0	0	0	0	20363000	10708000	9654400	6823	4123	6449	42424;42425	57603;57604	57603			2	
DAVLLLFANK	1	Unmodified	1102.6386	0.63864553	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.39	6.64	4	8	4				3	6	6	8	9	10	4	91.443	86.419	2	6.6022E-19	44236	160513_QHF_FH_JSI11Kac_6	163.72	153.09			0.43593	0.41758	148.57	25	24	Median	1.9483	1.6847	165.95	7	6	Median	0.32417	0.38823	159.23	7	7	Median	0.43593	0.41758	147.45	7	7	Median	0.32503	0.3457	149.67	4	4	Median	1141900000	597990000	543910000	282510000	111050000	171460000	213050000	119490000	93561000	512980000	279190000	233790000	133370000	88261000	45106000	6824	1137	6450	42426;42427;42428;42429;42430;42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444;42445;42446;42447;42448;42449;42450;42451;42452;42453;42454;42455;42456	57605;57606;57607;57608;57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620;57621;57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644	57615			39	
DAVLLVFANK	1	Unmodified	1088.623	0.62299547	2125;1944;2126	P61204;P84077;P84085	ARF3;ARF1;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.11	6	5	2	1		3	8	10	3	9	8	11	10	76.885	69.878	2	3.3694E-34	38970	160513_QHF_FH_JSI11Kac_5	193.86	136.68			0.65366	0.68689	116.54	30	25	Median	0.82731	0.69602	73.534	5	3	Median	0.22691	0.26809	139.61	7	6	Median	1.1597	1.1158	127.92	10	10	Median	0.62218	0.67096	113.26	8	6	Median	1630900000	855340000	775530000	218070000	130710000	87365000	300900000	175820000	125080000	872940000	421670000	451270000	238960000	127130000	111820000	6825	1944;2125;2126	6451	42457;42458;42459;42460;42461;42462;42463;42464;42465;42466;42467;42468;42469;42470;42471;42472;42473;42474;42475;42476;42477;42478;42479;42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490;42491;42492;42493;42494	57645;57646;57647;57648;57649;57650;57651;57652;57653;57654;57655;57656;57657;57658;57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670;57671;57672;57673;57674;57675;57676;57677;57678;57679;57680;57681;57682;57683;57684;57685;57686;57687;57688;57689	57676			45	
DAVLQGMFYFRK	1	Unmodified	1473.7439	0.74385566	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	1		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	79.347	76.399	3	8.3244E-05	40558	160513_QHF_FH_JSI10Kac_6	75.78	45.342			0.74935	0.84734	7.4842	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75877	0.89339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74005	0.80367	NaN	1	1	Median	59329000	34782000	24547000	0	0	0	48387000	28733000	19654000	0	0	0	10942000	6049400	4892500	6826	1622	6452	42495;42496	57690;57691	57691			2	
DAVLYFSESLVPTAR	0	Unmodified	1666.8566	0.85663681	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	2	3	3	98.436	98.266	2	5.2043E-05	88935	160511_QHF_FH_JSI10i_1	136.38	122.95			0.64394	0.68387	41.044	10	9	Median	1.0297	0.89697	53.801	2	2	Median	0.6132	0.7323	7.6526	2	2	Median	0.59596	0.57242	47.338	3	2	Plateau	0.65681	0.67416	58.309	3	3	Median	221270000	128670000	92600000	29634000	15623000	14011000	59787000	41502000	18285000	72635000	39339000	33296000	59210000	32203000	27007000	6827	3860	6453	42497;42498;42499;42500;42501;42502;42503;42504;42505;42506	57692;57693;57694;57695;57696;57697;57698;57699;57700;57701	57696			10	
DAVMSHTLIYIPSYFDFVR	0	Unmodified	2273.1191	0.11907586	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.38	87.973	3	1.5746E-08	52249	160513_QHF_FH_JSI10Kac_6	103.85	88.761			1.0711	1.0277	11.834	4	0	Median	1.155	0.98608	NaN	1	0	Median	1.076	1.2736	NaN	1	0	Median	1.0663	0.99739	NaN	1	0	Median	1.0089	1.059	NaN	1	0	Median	677910000	329940000	347980000	148140000	71140000	77003000	128570000	59231000	69337000	192320000	97909000	94408000	208890000	101660000	107230000	6828	3022	6454	42507;42508;42509;42510	57702;57703;57704;57705;57706	57706			3	
DAVPAFIEPNVR	0	Unmodified	1326.6932	0.6932003	3104	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				69.026	68.05	2	0.0015926	60473	160511_QHF_FH_JSI9i_1	88.681	68.377			1.4884	1.2634	NaN	1	1	Median	1.4884	1.2634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37733000	19941000	17791000	37733000	19941000	17791000	0	0	0	0	0	0	0	0	0	6829	3104	6455	42511	57707	57707			1	
DAVQKNSEK	2	Acetyl (K)	1059.5197	0.51965261	4772	Q9H7Z6	KAT8	Histone acetyltransferase KAT8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	10.637	3.3714	2	0.0072016	3502	160513_QHF_FH_JSI10Kac_2	67.993	43.07			0.96229	1.0339	21.899	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1673	1.3541	NaN	1	0	Median	0.94011	0.87763	NaN	1	0	Median	0.96229	1.0339	NaN	1	0	Median	9457700	4617900	4839800	0	0	0	3627100	1538700	2088400	1581500	761670	819850	4249100	2317500	1931600	6830	4772	6456	42512;42513;42514	57708;57709;57710;57711;57712	57710	3224		5	
DAVQLETLELPPGCVR	0	Unmodified	1795.9138	0.91383411	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	81.043	80.789	2	0.00032915	73551	160511_QHF_FH_JSI11i_1	83.617	59.766			0.20007	0.21053	83.997	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32892	0.3813	NaN	1	1	Median	0.1217	0.11624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35927000	30074000	5853200	0	0	0	14406000	10810000	3596200	21521000	19264000	2257000	0	0	0	6831	3973	6457	42515;42516;42517	57713;57714;57715	57713			3	
DAVRDGLR	0	Unmodified	900.47773	0.47772821	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	7.2	6.4	1	1	1					2		1	1	1	2	13.706	9.8205	3	0.012742	8745	160511_QHF_FH_JSI12i_3	36.557	13.033			1.103	1.1141	10.948	5	0	Median	1.2767	1.1141	NaN	1	0	Median	0.94456	1.0771	NaN	1	0	Median	1.3796	1.321	NaN	1	0	Median	1.0439	1.0971	13.983	2	0	Median	382530000	173260000	209270000	124490000	47474000	77016000	35047000	18410000	16637000	6970900	2640400	4330500	216020000	104740000	111290000	6832	1494	6458	42518;42519;42520;42521;42522	57716;57717;57718	57717			3	
DAVSGMGVIVHIIEK	1	Unmodified	1566.844	0.84396364	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.83		9	3						2	3	3	4	4	95.691	94.993	2;3	1.0459E-15	43793	160513_QHF_FH_JSI9Kac_6	136.24	102.35			2.0639	1.728	79.498	11	11	Median	2.4159	2.0327	22.965	2	2	Median	2.8532	3.5867	95.379	3	3	Median	3.4064	3.2986	89.324	3	3	Plateau	6.9609	7.1418	118.54	3	3	Plateau	524780000	117560000	407230000	37713000	12496000	25217000	84728000	32388000	52341000	181830000	31604000	150230000	220510000	41068000	179440000	6833	1672	6459	42523;42524;42525;42526;42527;42528;42529;42530;42531;42532;42533;42534;42535;42536	57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736	57733			18	
DAVSGMGVIVHIIEK	1	Oxidation (M)	1582.8389	0.83887826	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			77.642	67.213	3	0.049184	33520	160513_QHF_FH_JSI10Kac_5	30.133	19.794			0.70283	0.76067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70283	0.76067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1011600	593450	418120	0	0	0	1011600	593450	418120	0	0	0	0	0	0	6834	1672	6459	42537	57737	57737			1	
DAVSNTTNQLESK	1	Unmodified	1405.6685	0.66850169	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.29	5.44	3				4					1	3	2	1	36.765	31.477	2	1.0784E-15	28270	160511_QHF_FH_JSI10i_1	165.63	136.9			0.89829	0.87643	20.88	7	1	Median	1.055	0.85905	NaN	1	0	Median	0.90757	1.108	33.977	3	1	Median	0.88517	0.84475	5.5749	2	0	Median	0.81223	0.87643	NaN	1	0	Median	668420000	342380000	326040000	173040000	75556000	97488000	282210000	151750000	130460000	210360000	113550000	96816000	2809100	1530000	1279100	6835	3328	6460	42538;42539;42540;42541;42542;42543;42544	57738;57739;57740;57741;57742;57743	57740			5	
DAVSPFSFSLLK	1	Unmodified	1309.6918	0.69180331	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		100.7	100.64	2	0.0055958	91285	160511_QHF_FH_JSI10i_1	53.237	27.501			0.5041	0.53693	27.14	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55644	0.65053	NaN	1	0	Median	0.45669	0.44317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34981000	21685000	13296000	0	0	0	16800000	11086000	5713300	18182000	10599000	7582700	0	0	0	6836	3584	6461	42545;42546;42547	57744;57745;57746	57745			2	
DAVTTTVTGAK	1	Unmodified	1062.5557	0.55570376	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	6.5	5.5	2				2					1		2	1	28.32	23.641	2	0.0012375	10790	160513_QHF_FH_JSI11Kac_2	79.148	29.108			0.98477	0.87488	93.455	4	1	Median	1.2142	0.983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9726	1.9322	128.53	2	1	Median	0.57618	0.6021	NaN	1	0	Median	106020000	59276000	46744000	51492000	25784000	25707000	0	0	0	3716000	1589600	2126300	50813000	31902000	18910000	6837	4281	6462	42548;42549;42550;42551	57747;57748;57749	57747			2	
DAVTYTEHAK	1	Unmodified	1133.5353	0.53530267	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	5.39	8	14	2				7	1		8	8	8	8	16.047	13.711	2;3	1.9788E-11	11551	160511_QHF_FH_JSI10i_1	152.34	128.31			1.116	1.1445	55.246	30	15	Median	1.119	0.93394	48.58	6	3	Median	1.4867	1.7445	51.881	8	4	Median	0.98296	0.96066	54.429	8	4	Median	0.78333	0.83	49.073	8	4	Median	6331100000	3169200000	3161900000	1145800000	544620000	601140000	2075700000	822850000	1252800000	1653900000	866410000	787450000	1455800000	935310000	520480000	6838	2019	6463	42552;42553;42554;42555;42556;42557;42558;42559;42560;42561;42562;42563;42564;42565;42566;42567;42568;42569;42570;42571;42572;42573;42574;42575;42576;42577;42578;42579;42580;42581;42582;42583	57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776;57777;57778;57779;57780;57781;57782;57783;57784;57785;57786;57787;57788;57789;57790;57791;57792;57793;57794;57795	57767			45	
DAVVGRPSMDK	1	Unmodified	1173.5812	0.58120701	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.745	1	2	3								2	2	2	20.395	20.167	2;3	0.0049333	16996	160511_QHF_FH_JSI11i_3	45.829	34.365			0.78604	0.78938	74.197	6	5	Median	NaN	NaN	NaN	0	0	Median	0.80787	0.9813	70.675	2	2	Median	0.74862	0.72558	26.3	2	1	Median	1.728	1.6773	120.97	2	2	Median	481390000	241370000	240020000	0	0	0	165310000	90593000	74717000	202880000	108920000	93963000	113200000	41859000	71344000	6839	3036	6464	42584;42585;42586;42587;42588;42589	57796;57797;57798;57799;57800;57801	57796			6	
DAVVYPILVEFTR	0	Unmodified	1520.8239	0.82388012	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	101.88	101.77	2	3.0591E-10	87656	160511_QHF_FH_JSI12i_2	146.16	126.17			1.2224	1.1721	43.711	7	1	Median	1.3128	1.0554	NaN	1	0	Median	0.97486	1.183	27.56	2	0	Median	1.9295	1.901	68.394	2	1	Median	1.0923	1.1737	48.51	2	0	Median	801630000	351750000	449890000	39531000	16733000	22798000	262720000	126970000	135740000	229520000	80841000	148670000	269870000	127200000	142670000	6840	5633	6465	42590;42591;42592;42593;42594;42595;42596	57802;57803;57804;57805;57806;57807;57808	57802			6	
DAWEIPR	0	Unmodified	885.43447	0.43446642	885;884	P07947;P07948	YES1;LYN	Tyrosine-protein kinase Yes;Tyrosine-protein kinase Lyn	no	no	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	49.898	49.22	2	0.0167	43729	160511_QHF_FH_JSI9i_1	62.659	44.524			0.87149	0.89387	8.7979	4	0	Median	1.2036	0.97504	NaN	1	0	Median	0.72873	0.85348	NaN	1	0	Median	0.82955	0.80299	NaN	1	0	Median	0.91554	0.93616	NaN	1	0	Median	221760000	121820000	99940000	50622000	23198000	27424000	41893000	22198000	19694000	60827000	33090000	27737000	68422000	43337000	25085000	6841	884;885	6466	42597;42598;42599;42600	57809;57810	57810			2	
DAWGPGAAK	1	Unmodified	871.41882	0.41881635	793	P02786;Q9UP52	TFRC;TFR2	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form;Transferrin receptor protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	23.37	21.326	2	3.2531E-05	18677	160511_QHF_FH_JSI12i_1	101.28	90.411			0.76293	0.90322	29.046	5	1	Median	0.75247	0.61663	NaN	1	0	Median	0.89371	1.0584	22.419	2	0	Median	0.69675	0.67999	NaN	1	1	Median	1.0006	1.0383	NaN	1	0	Median	1831300000	940320000	890980000	453000000	222580000	230420000	488030000	282650000	205380000	351270000	164880000	186380000	539000000	270210000	268800000	6842	793	6467	42601;42602;42603;42604;42605	57811;57812;57813;57814;57815;57816;57817;57818;57819	57812			9	
DAWQMTEEEYTPPAGAK	1	Unmodified	1922.8356	0.83564337	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	63.412	62.811	2	6.5026E-11	57130	160511_QHF_FH_JSI12i_1	172.99	167.15			1.0651	1.061	18.784	6	6	Median	1.4289	1.2155	NaN	1	1	Median	0.79446	0.9062	NaN	1	1	Median	1.2269	1.1829	28.287	2	2	Median	0.99864	1.0278	17.399	2	2	Median	264970000	136770000	128200000	31423000	14871000	16552000	35322000	18516000	16806000	90296000	44845000	45451000	107930000	58542000	49387000	6843	2997	6468	42606;42607;42608;42609;42610;42611	57820;57821;57822;57823;57824;57825	57823			6	
DAWVRFSAQSQAR	0	Unmodified	1520.7484	0.74842377	755	O96011	PEX11B	Peroxisomal membrane protein 11B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	50.054	49.269	3	0.0062907	43540	160511_QHF_FH_JSI9i_1	32.295	17.863			0.84377	0.82794	15.738	5	0	Median	0.91237	0.73423	10.331	2	0	Median	0.82738	0.95538	NaN	1	0	Median	0.84377	0.82794	NaN	1	0	Median	0.94476	1.0145	NaN	1	0	Median	5789100000	3072000000	2717100000	1070400000	529230000	541140000	1262200000	710930000	551280000	1675900000	864930000	810930000	1780700000	966940000	813730000	6844	755	6469	42612;42613;42614;42615;42616	57826;57827;57828;57829;57830;57831;57832	57831			7	
DAYERDLEADIIGDTSGHFQK	1	Unmodified	2379.0979	0.097882729	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	75.022	74.88	3	4.8058E-10	64714	160511_QHF_FH_JSI12i_3	115.63	106.81			1.1247	1.0827	2.9077	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2086	1.1052	NaN	1	1	Median	1.0466	1.0607	NaN	1	1	Median	210150000	91207000	118940000	0	0	0	0	0	0	40783000	13317000	27466000	169370000	77890000	91476000	6845	891	6470	42617;42618;42619;42620;42621	57833;57834;57835;57836;57837	57837			5	
DAYLPLR	0	Unmodified	846.45995	0.45995289	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.709	48.023	2	0.0042408	43522	160511_QHF_FH_JSI12i_1	86.512	9.1381			0.75092	0.70929	16.361	3	0	Plateau	1.1881	0.96051	NaN	1	0	Median	0.63148	0.74195	NaN	1	0	Median	0.75092	0.70929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	169600000	91184000	78417000	51021000	21104000	29917000	52339000	31330000	21009000	66241000	38749000	27492000	0	0	0	6846	1307	6471	42622;42623;42624;42625	57838;57839;57840;57841	57839			4	
DAYLVHLIQR	0	Unmodified	1226.6772	0.6771563	5748	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	74.671	65.229	2	0.0086451	34191	160513_QHF_FH_JSI12Kac_6	67.563	50.892			1.684	1.7503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.684	1.7503	NaN	1	1	Median	18828000	6214200	12614000	0	0	0	0	0	0	0	0	0	18828000	6214200	12614000	6847	5748	6472	42626	57842	57842			1	
DAYQVILDGVK	1	Unmodified	1219.6449	0.64485312	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.13	6					2	2			2	3	1	4	76.066	72.457	2	2.0614E-06	66873	160511_QHF_FH_JSI10i_1	118.4	94.373			0.59164	0.62999	42.649	9	7	Median	0.8005	0.65383	51.755	2	2	Median	0.46615	0.55516	48.581	2	2	Median	0.53938	0.52319	NaN	1	1	Median	0.70152	0.76208	43.937	4	2	Median	2117100000	1215700000	901470000	671420000	363720000	307700000	705980000	455460000	250520000	288780000	162740000	126040000	450950000	233740000	217210000	6848	4575	6473	42627;42628;42629;42630;42631;42632;42633;42634;42635;42636	57843;57844;57845;57846;57847;57848;57849;57850;57851;57852;57853;57854;57855	57847			13	
DAYSGGAVNLYHVR	0	Unmodified	1520.7372	0.73719038	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.61	1	8	3					6	4	5	5	7	5	50.226	45.056	2;3	6.3542E-201	39842	160511_QHF_FH_JSI10i_2	326.41	306.65			1.0777	1.1019	20.376	20	5	Median	1.5144	1.2811	27.098	4	2	Median	0.89058	1.0633	10.6	5	1	Median	1.1078	1.078	5.7544	6	1	Median	1.0212	1.1257	30.877	5	1	Median	4209700000	1955800000	2253900000	901500000	309780000	591730000	931000000	486830000	444170000	1271300000	680830000	590520000	1105800000	478350000	627470000	6849	1303	6474	42637;42638;42639;42640;42641;42642;42643;42644;42645;42646;42647;42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658	57856;57857;57858;57859;57860;57861;57862;57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888	57881			31	
DAYSSFGSR	0	Unmodified	988.42502	0.42502394	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	5.85	4					5	3			1	3	4	4	26.74	21.979	2	1.1129E-06	19797	160511_QHF_FH_JSI11i_1	134.48	134.48			1.1117	1.056	16.812	8	0	Linear	1.2166	0.99187	NaN	1	0	Median	0.75032	0.89078	8.0122	3	0	Plateau	0.99794	0.97509	32.45	2	0	Median	0.84213	0.89362	16.262	2	0	Median	1989800000	1045200000	944540000	437610000	213460000	224150000	472040000	267130000	204910000	583610000	298720000	284890000	496510000	265910000	230590000	6850	154	6475	42659;42660;42661;42662;42663;42664;42665;42666;42667;42668;42669;42670	57889;57890;57891;57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905	57889			16	
DAYWIAMNSSLK	1	Unmodified	1397.6649	0.66493664	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									1	2	3	77.028	76.177	2	1.0634E-05	69225	160511_QHF_FH_JSI10i_1	96.229	80.266			1.6912	1.2736	23.601	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3516	1.3197	11.096	2	1	Median	0.96768	1.0567	32.467	2	2	Median	93997000	46662000	47334000	0	0	0	0	0	0	55078000	25681000	29397000	38919000	20982000	17937000	6851	566	6476	42671;42672;42673;42674;42675;42676	57906;57907;57908;57909;57910;57911	57910			6	
DAYWIAMNSSLK	1	Oxidation (M)	1413.6599	0.65985126	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			72.037	61.413	2	0.015809	32849	160513_QHF_FH_JSI10Kac_4	60.563	43.99			2.2373	2.6167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2373	2.6167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1964800	781130	1183700	0	0	0	1964800	781130	1183700	0	0	0	0	0	0	6852	566	6476	42677	57912	57912		213	1	
DCAVIVTQK	1	Unmodified	1032.5274	0.52738052	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	5.47	4				5					1	3	2	3	30.946	25.947	2	0.00010945	23398	160511_QHF_FH_JSI12i_1	110.87	66.425			0.45388	0.39156	115.3	9	9	Median	0.45388	0.37125	NaN	1	1	Median	0.33732	0.39156	106.75	3	3	Median	0.72087	0.69549	200.09	2	2	Median	0.4672	0.47755	138.27	3	3	Median	700230000	442790000	257440000	128400000	74107000	54293000	220420000	144720000	75695000	169880000	113930000	55954000	181530000	110030000	71498000	6853	1922	6477	42678;42679;42680;42681;42682;42683;42684;42685;42686	57913;57914;57915;57916;57917;57918;57919;57920;57921	57915			9	
DCEVVMMIGLPGAGK	1	Unmodified	1575.7459	0.74590585	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	90.324	90.027	2;3	2.9744E-07	81805	160511_QHF_FH_JSI10i_1	136.5	119.13			1.2623	1.2427	34.14	6	4	Median	NaN	NaN	NaN	0	0	Median	0.69713	0.80636	11.418	2	1	Median	1.5001	1.4601	34.338	2	2	Median	1.3856	1.416	6.9371	2	1	Median	213540000	111360000	102180000	0	0	0	79628000	44535000	35093000	55609000	28331000	27278000	78302000	38492000	39810000	6854	2161	6478	42687;42688;42689;42690;42691;42692	57922;57923;57924;57925;57926;57927;57928	57928			7	
DCEVVMMIGLPGAGK	1	Oxidation (M)	1591.7408	0.74082047	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	80.462	79.938	2	0.0072568	72847	160511_QHF_FH_JSI12i_1	57.348	45.482			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6855	2161	6478	42693	57929	57929		1806	1	
DCEVVMMIGLPGAGK	1	2 Oxidation (M)	1607.7357	0.73573509	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	0				By MS/MS	13	0						1							1	73.64	65.183	2	0.021851	32612	160513_QHF_FH_JSI12Kac_3	63.283	54.095			1.7455	1.8167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7455	1.8167	NaN	1	1	Median	1117100	342680	774380	0	0	0	0	0	0	0	0	0	1117100	342680	774380	6856	2161	6478	42694	57930	57930		1806	1	
DCFGCLR	0	Unmodified	926.37386	0.37385677	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	32.748	32.146	2	0.016664	28236	160511_QHF_FH_JSI9i_1	62.715	51.646			1.0592	1.017	4.5101	4	0	Median	1.2247	0.99858	NaN	1	0	Median	0.84967	1.0103	NaN	1	0	Median	1.0588	1.0237	NaN	1	0	Median	1.0596	1.1037	NaN	1	0	Median	247200000	125690000	121510000	43005000	19332000	23673000	63508000	33573000	29935000	77193000	40342000	36851000	63490000	32439000	31051000	6857	541	6479	42695;42696;42697;42698	57931;57932;57933	57933			3	
DCGATWVVLGHSER	0	Unmodified	1585.7307	0.73072479	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.6	1	9	6					9	9	7	7	10	10	59.199	53.529	2;3	9.8112E-97	29362	160513_QHF_FH_JSI10Kac_6	253.76	234.52			1.0993	1.1795	21.968	30	4	Median	1.4038	1.177	16.106	6	1	Median	0.9887	1.1945	14.897	7	0	Median	0.90994	0.92575	11.248	9	0	Median	1.286	1.4299	12.994	8	3	Median	4618000000	2257800000	2360200000	407310000	175120000	232180000	1124700000	513040000	611680000	2012200000	1108600000	903520000	1073800000	461020000	612800000	6858	1908	6480	42699;42700;42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727;42728;42729;42730;42731;42732	57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986;57987	57985			54	
DCGATWVVLGHSERR	0	Unmodified	1741.8318	0.83183582	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			53.188	44.605	4	0.060318	24553	160513_QHF_FH_JSI10Kac_6	10.228	5.4266			1.2633	1.5197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2633	1.5197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32030000	13843000	18188000	0	0	0	32030000	13843000	18188000	0	0	0	0	0	0	6859	1908	6481	42733	57988	57988			0	
DCGGAAQLAGPAAEADPLGR	0	Unmodified	1895.8796	0.87957387	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.343	62.698	2	1.6634E-07	57080	160511_QHF_FH_JSI12i_1	91.812	77.554			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6860	5644	6482	42734	57989	57989			1	
DCGSVDGVIK	1	Unmodified	1048.4859	0.48590964	1965	P61916	NPC2	Epididymal secretory protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		31.312	30.981	2	0.0051791	27519	160511_QHF_FH_JSI11i_1	56.432	46.402			1.9326	2.2141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9326	2.2141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26635000	15024000	11611000	0	0	0	26635000	15024000	11611000	0	0	0	0	0	0	6861	1965	6483	42735;42736	57990;57991	57990			2	
DCLINAAK	1	Unmodified	903.4484	0.44840192	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.035	26.487	2	0.0050674	23634	160511_QHF_FH_JSI12i_1	64.757	40.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6862	1132	6484	42737	57992	57992			1	
DCLNVLNK	1	Unmodified	974.48552	0.48551571	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	48.968	39.934	2	0.017206	21798	160513_QHF_FH_JSI12Kac_3	56.122	16.579			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6863	4274	6485	42738	57993	57993			1	
DCLSIPYR	0	Unmodified	1022.4855	0.48551571	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	49.539	49.039	2	0.0039585	44208	160511_QHF_FH_JSI10i_1	77.058	38.82			1.5393	1.5589	44.621	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.65664	0.7771	NaN	1	1	Median	0.93475	0.90974	NaN	1	1	Median	1.6842	1.7992	NaN	1	0	Median	134770000	69355000	65414000	0	0	0	36447000	21998000	14449000	58739000	31529000	27210000	39582000	15828000	23755000	6864	2094	6486	42739;42740;42741;42742;42743	57994;57995;57996;57997;57998	57996			5	
DCPLNAEAASSK	1	Unmodified	1261.5609	0.5608655	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	23.271	22.839	2	0.00014695	20136	160511_QHF_FH_JSI12i_1	83.862	74.504			1.0489	0.97644	27.482	6	5	Median	1.1537	0.92765	NaN	1	1	Median	0.7795	0.90276	39.792	2	2	Median	0.81634	0.78948	37.307	2	2	Median	1.092	1.1123	NaN	1	0	Median	270610000	132250000	138360000	20045000	7364200	12681000	71448000	35312000	36136000	91195000	50344000	40852000	87926000	39234000	48691000	6865	2296	6487	42744;42745;42746;42747;42748;42749;42750	57999;58000;58001;58002;58003;58004;58005;58006	58002			8	
DCPTIIHFVLANINFR	0	Unmodified	1928.9931	0.99308749	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	96.872	88.264	2;3	1.2963E-43	52661	160513_QHF_FH_JSI10Kac_6	177.84	163.15			1.1071	1.0436	20.03	5	1	Median	1.419	1.2098	NaN	1	0	Median	1.1986	1.414	NaN	1	0	Median	1.0175	0.96859	10.553	2	1	Median	0.83824	0.88331	NaN	1	0	Median	1299400000	616000000	683360000	146480000	66660000	79820000	225980000	101420000	124560000	678120000	340900000	337220000	248790000	107020000	141770000	6866	1604	6488	42751;42752;42753;42754;42755	58007;58008;58009;58010;58011;58012;58013	58013			7	
DCPTIIHFVLANINFRK	1	Unmodified	2057.0881	0.088050506	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		92.913	85.361	3	3.603E-24	49529	160513_QHF_FH_JSI10Kac_6	154.07	143.6			0.91108	0.95516	1.3135	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8069	0.96407	NaN	1	0	Median	1.0287	0.94633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199080000	100500000	98587000	0	0	0	139210000	70367000	68844000	59874000	30130000	29743000	0	0	0	6867	1604	6489	42756;42757	58014;58015;58016	58016			2	
DCQLNAHK	1	Unmodified	984.44471	0.44471353	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		8.332	0.7209	2	0.029006	3247	160513_QHF_FH_JSI11Kac_4	60.788	52.015			2.4024	2.252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4024	2.252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1239700	398680	841010	0	0	0	0	0	0	1239700	398680	841010	0	0	0	6868	2380	6490	42758	58017;58018	58018			2	
DCTVEMPILK	1	Unmodified	1204.5832	0.58318084	1882;2395	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	no	no	0	0	0	0				By MS/MS	1	0	1												1	66.149	65.526	2	0.00081214	59698	160511_QHF_FH_JSI12i_1	76.679	49.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6869	1882;2395	6491	42759	58019	58019			1	
DCVEAAK	1	Unmodified	791.34835	0.34835353	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.8019	6.4497	2	0.011062	4435	160511_QHF_FH_JSI12i_1	72.138	43.24			1.5515	1.5978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5515	1.5978	NaN	1	0	Median	98988000	46950000	52037000	0	0	0	0	0	0	0	0	0	98988000	46950000	52037000	6870	2147	6492	42760	58020	58020			1	
DCVGPEVEK	1	Unmodified	1031.4594	0.45936054	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	5.65	4	1			3	3				1	3	3	4	23.755	19.11	2	1.1463E-05	16584	160511_QHF_FH_JSI11i_1	110.87	96.876			1.0282	1.1083	22.196	10	0	Median	1.0658	0.88184	NaN	1	0	Median	1.2278	1.4498	15.765	3	0	Plateau	0.83293	0.80796	8.8124	3	0	Plateau	1.3737	1.2336	9.8425	3	0	Plateau	3621200000	1773600000	1847600000	551540000	254270000	297270000	815390000	399400000	415990000	1231300000	643230000	588030000	1023100000	476720000	546350000	6871	775	6493	42761;42762;42763;42764;42765;42766;42767;42768;42769;42770;42771	58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037	58021			17	
DDAAPAPPVADAK	1	Unmodified	1236.5986	0.59863121	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	30.141	29.451	2	0.0068405	26391	160511_QHF_FH_JSI12i_1	60.434	50.653			0.56816	0.55531	19.317	3	3	Median	0.89285	0.72753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56816	0.55531	NaN	1	1	Median	0.48524	0.50039	NaN	1	1	Median	148710000	83198000	65514000	34782000	17579000	17204000	0	0	0	55447000	28153000	27295000	58483000	37467000	21016000	6872	3869	6494	42772;42773;42774;42775	58038;58039;58040;58041	58039			4	
DDAGWSPLHIAASAGRDEIVK	1	Unmodified	2207.0971	0.097094868	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	3	1	75.494	75.289	3;4	3.1316E-24	67131	160511_QHF_FH_JSI11i_3	178.77	169.24			0.91063	0.91152	9.7604	5	2	Median	NaN	NaN	NaN	0	0	Median	0.87563	1.0619	NaN	1	0	Median	1.0812	1.0405	10.546	3	2	Plateau	0.91063	0.91152	NaN	1	0	Median	563330000	270410000	292920000	0	0	0	52091000	26001000	26090000	458140000	212410000	245730000	53098000	32003000	21095000	6873	573	6495	42776;42777;42778;42779;42780;42781	58042;58043;58044;58045;58046;58047;58048;58049	58045			8	
DDAMAAVPAK	1	Oxidation (M)	1003.4644	0.46444592	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		14.743	14.617	2	0.058374	12139	160511_QHF_FH_JSI11i_1	53.493	42.125			0.33403	0.32003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33403	0.32003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11222000	8450500	2771800	0	0	0	0	0	0	11222000	8450500	2771800	0	0	0	6874	432	6496	42782	58050	58050			1	
DDAMAAVPAK	1	Unmodified	987.46953	0.46953129	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.75	4.76	3				1					1		2	1	29.812	26.434	2	0.00080553	23754	160511_QHF_FH_JSI12i_1	76.827	46.323			1.7988	1.7716	67.156	3	3	Median	4.4804	3.679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3262	1.3055	43.174	2	2	Median	NaN	NaN	NaN	0	0	Median	268890000	108430000	160460000	92865000	14339000	78526000	0	0	0	176030000	94095000	81933000	0	0	0	6875	432	6496	42783;42784;42785;42786	58051;58052;58053;58054	58053			4	
DDAMLLK	1	Unmodified	804.40514	0.40514012	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.8	8	1				4	1			3	4	5	2	42.215	38.405	2	0.0057392	34225	160511_QHF_FH_JSI9i_1	97.473	80.546			0.50445	0.52367	133.59	14	12	Median	0.71845	0.60153	228.24	3	2	Median	1.0274	1.2229	131.4	4	4	Median	0.53121	0.54264	118.18	5	4	Median	0.37605	0.40503	31.297	2	2	Median	21417000000	10892000000	10525000000	5660700000	2956700000	2704000000	5653300000	3064000000	2589200000	6831700000	3104500000	3727300000	3271600000	1766600000	1505000000	6876	980	6497	42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800	58055;58056;58057;58058;58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074	58070			20	
DDAMLLK	1	Oxidation (M)	820.40005	0.40005474	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	5.38	5.66	5				1	2				3		1	4	34.161	30.338	2	0.002623	14598	160513_QHF_FH_JSI12Kac_3	100.74	71.404			0.78325	0.83615	173.52	8	3	Median	2.8917	2.3528	175.8	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61507	0.6093	NaN	1	1	Median	0.45714	0.48028	113.92	4	1	Median	989460000	432500000	556960000	586220000	139540000	446680000	0	0	0	24409000	11361000	13048000	378830000	281600000	97231000	6877	980	6497	42801;42802;42803;42804;42805;42806;42807;42808	58075;58076;58077;58078;58079;58080;58081;58082	58081		544	8	
DDAMLLKGK	2	Acetyl (K);Oxidation (M)	1047.527	0.52704617	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.493					7	5					4	2	6	45.973	36.878	2	1.5296E-11	20738	160513_QHF_FH_JSI11Kac_3	157.86	119.07			0.85089	0.96777	239.39	6	3	Median	NaN	NaN	NaN	0	0	Median	6.636	7.7802	276.09	2	1	Median	0.51819	0.50961	NaN	1	0	Median	0.77553	0.84805	266.56	3	2	Median	80847000	46658000	34190000	0	0	0	22032000	9006100	13026000	20713000	12795000	7918400	38102000	24857000	13246000	6878	980	6498	42809;42810;42811;42812;42813;42814;42815;42816;42817;42818;42819;42820	58083;58084;58085;58086;58087;58088;58089;58090;58091;58092;58093;58094;58095;58096;58097;58098	58085	751;752	544	16	
DDAMLLKGK	2	Acetyl (K)	1031.5321	0.53213155	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	0.573					3	10	2			1	5	4	5	58.842	49.254	2	4.7286E-06	25909	160513_QHF_FH_JSI11Kac_3	131.06	92.27			3.6679	3.9869	282.39	10	8	Median	NaN	NaN	NaN	0	0	Median	0.66252	0.7784	392.43	4	4	Median	1.3335	1.3032	334.04	2	2	Median	3.6679	3.9869	176.12	4	2	Median	191170000	111330000	79837000	0	0	0	56619000	26367000	30252000	55339000	37699000	17640000	79209000	47265000	31944000	6879	980	6498	42821;42822;42823;42824;42825;42826;42827;42828;42829;42830;42831;42832;42833;42834;42835	58099;58100;58101;58102;58103;58104;58105;58106;58107;58108;58109;58110;58111;58112;58113;58114;58115	58100	751;752		17	
DDANNDPQWSEEQLIAAK	1	Unmodified	2042.9181	0.91812745	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					2	2	2	3	65.976	64.487	2;3	8.5181E-82	58558	160511_QHF_FH_JSI12i_1	311.99	290.76			1.0455	1.0439	12.383	9	0	Median	1.0876	0.86658	3.1796	2	0	Median	0.88082	1.0354	1.1626	2	0	Median	1.0557	1.0338	6.4142	2	0	Median	1.0004	1.064	10.655	3	0	Plateau	4593900000	2319800000	2274100000	1241300000	649330000	592010000	1010400000	515890000	494520000	1073000000	540310000	532660000	1269200000	614260000	654920000	6880	1206	6499	42836;42837;42838;42839;42840;42841;42842;42843;42844	58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142	58125			27	
DDAQSVETLGKPK	2	Acetyl (K)	1428.7096	0.70963822	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	1	0	0	1		By MS/MS	By MS/MS		11.7	0.471				1	2						2	1		51.104	41.8	2	0.0013965	18434	160513_QHF_FH_JSI10Kac_2	78.342	71.316			1.3157	1.3962	42.25	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89238	1.0356	NaN	1	0	Median	1.9399	1.8823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6361300	2407400	3953900	0	0	0	3613800	1658900	1954900	2747500	748530	1999000	0	0	0	6881	3819	6500	42845;42846;42847	58143;58144;58145	58144	2950		3	
DDATLSGK	1	Unmodified	805.38176	0.38176214	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3						2	2	3	10.11	6.354	2	0.00081197	3728	160513_QHF_FH_JSI12Kac_2	106.04	81.043			1.6033	1.7737	71.112	6	6	Median	NaN	NaN	NaN	0	0	Median	1.8556	2.169	29.107	2	2	Median	1.3554	1.2875	111.19	2	2	Median	0.97788	1.0235	78.412	2	2	Median	551950000	264950000	287010000	0	0	0	214760000	84066000	130690000	168650000	84615000	84038000	168540000	96266000	72274000	6882	2415	6501	42848;42849;42850;42851;42852;42853;42854	58146;58147;58148;58149;58150;58151;58152	58152			7	
DDATLSGKR	1	Acetyl (K)	1003.4934	0.49343786	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.5	0.5					1	1					1		1	22.172	14.995	2	0.047043	9420	160513_QHF_FH_JSI12Kac_3	65.305	47.92			0.47004	0.50737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47004	0.50737	NaN	1	0	Median	5200800	3630200	1570600	0	0	0	965300	965300	0	0	0	0	4235500	2664900	1570600	6883	2415	6502	42855;42856	58153;58154	58154			2	
DDAVTSAGSEEK	1	Unmodified	1207.5204	0.52044047	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	12.041	11.638	2	1.7786E-05	9505	160511_QHF_FH_JSI12i_1	116.77	87.679			0.86133	0.8487	73.734	8	8	Median	1.596	1.2851	145.23	2	2	Median	1.2665	1.4407	83.689	2	2	Median	0.75417	0.72737	24.117	2	2	Median	1.2474	1.2825	60.693	2	2	Median	201020000	94289000	106730000	39702000	18697000	21005000	45337000	21003000	24335000	49364000	23660000	25704000	66614000	30930000	35684000	6884	3653	6503	42857;42858;42859;42860;42861;42862;42863;42864	58155;58156;58157;58158;58159;58160;58161;58162	58158			8	
DDDDVVIGK	1	Unmodified	974.45566	0.45565537	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.853	27.647	2	0.0071209	24386	160511_QHF_FH_JSI11i_1	53.775	38.394			1.4079	1.3293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4079	1.3293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64828000	20387000	44441000	0	0	0	0	0	0	64828000	20387000	44441000	0	0	0	6885	256	6504	42865	58163	58163			1	
DDDIAALVVDNGSGMCK	1	Acetyl (Protein N-term)	1820.7921	0.792064	1916	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.01	12		5	2						3	4	5	7	91.369	90.026	2;3	2.5869E-160	82739	160511_QHF_FH_JSI10i_1	176.8	153.13			1.0242	1.1513	78.275	8	1	Median	1.4837	1.2283	9.953	2	0	Median	1.0025	1.1578	128.12	3	1	Median	0.77393	0.74654	7.3854	2	0	Median	1.2243	1.3098	NaN	1	0	Median	5002700000	2457000000	2545700000	670250000	284810000	385440000	1306700000	638330000	668420000	1525400000	853650000	671790000	1500300000	680170000	820100000	6886	1916	6505	42866;42867;42868;42869;42870;42871;42872;42873;42874;42875;42876;42877;42878;42879;42880;42881;42882;42883;42884	58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186;58187;58188;58189;58190;58191;58192;58193;58194;58195	58182			32	
DDDIAALVVDNGSGMCK	1	Acetyl (Protein N-term);Oxidation (M)	1836.787	0.78697862	1916	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.13	4			3	1					2	2	2	2	82.769	79.674	2	1.0413E-52	74682	160511_QHF_FH_JSI12i_1	117.86	111.62			1.2362	1.0444	25.617	5	0	Median	1.2553	1.0444	NaN	1	0	Median	0.84342	1.0059	NaN	1	0	Median	0.73898	0.70786	NaN	1	0	Median	1.255	1.3183	3.9922	2	0	Median	553950000	278960000	274990000	87328000	40793000	46535000	131930000	73560000	58369000	156690000	85606000	71087000	178000000	79004000	98998000	6887	1916	6505	42885;42886;42887;42888;42889;42890;42891;42892	58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207	58199		1573	12	
DDDIEEGDLPEHK	1	Unmodified	1510.6423	0.64234652	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	32.191	31.537	2;3	1.2539E-30	28182	160511_QHF_FH_JSI11i_1	160.36	144.62			1.0669	1.169	19.925	7	3	Median	1.1222	0.91633	36.755	2	2	Median	1.0123	1.1907	8.9173	2	0	Median	1.2021	1.169	NaN	1	1	Median	1.0936	1.1414	10.082	2	0	Median	1302500000	645460000	657060000	259200000	125060000	134140000	516360000	263830000	252530000	146100000	66109000	79992000	380870000	190460000	190410000	6888	2568	6506	42893;42894;42895;42896;42897;42898;42899;42900	58208;58209;58210;58211;58212;58213;58214;58215	58209			6	
DDDLFHSYTTIMALIHLGSSK	1	Unmodified	2363.1467	0.14674718	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									3	1		2		97.687	88.377	3;4	3.1599E-08	50489	160513_QHF_FH_JSI11Kac_6	134.86	126.15			1.5871	1.3793	34.395	3	1	Median	1.5871	1.3793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5712	1.5123	48.058	2	1	Median	NaN	NaN	NaN	0	0	Median	236080000	99195000	136880000	75635000	31914000	43722000	0	0	0	160440000	67281000	93162000	0	0	0	6889	3648	6507	42901;42902;42903	58216;58217;58218	58216			1	
DDDVPLDWR	0	Unmodified	1129.504	0.50400254	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	61.474	60.982	2	0.00019124	55342	160511_QHF_FH_JSI10i_1	85.731	69.528			0.96837	1.0162	5.4827	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8538	1.0162	NaN	1	0	Median	1.1812	1.1143	NaN	1	0	Median	0.96837	1.0108	NaN	1	0	Median	200880000	105640000	95249000	0	0	0	60178000	32714000	27464000	64690000	38671000	26019000	76017000	34250000	41767000	6890	678	6508	42904;42905;42906;42907	58219;58220;58221;58222;58223;58224;58225;58226	58226			8	
DDDVPLMWR	0	Unmodified	1145.5175	0.51754412	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	70.92	70.445	2	0.00049069	64174	160511_QHF_FH_JSI11i_1	79.713	66.757			1.0595	1.0559	21.403	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93439	0.90756	NaN	1	0	Median	1.2015	1.2284	NaN	1	0	Median	43032000	20859000	22173000	0	0	0	0	0	0	16944000	8251200	8693200	26087000	12608000	13480000	6891	315	6509	42908;42909	58227;58228;58229	58227			3	
DDDWGNIK	1	Unmodified	961.41412	0.4141249	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.543	34.813	2	0.00055326	31172	160511_QHF_FH_JSI11i_1	104.45	85.717			0.74741	0.87306	77.297	5	1	Median	1.664	1.3748	135.29	2	1	Median	0.74741	0.87306	NaN	1	0	Median	1.0251	1.0127	NaN	1	0	Median	0.5215	0.55847	NaN	1	0	Median	1025400000	518620000	506750000	273310000	114270000	159040000	247670000	134940000	112730000	228010000	114310000	113700000	276380000	155100000	121280000	6892	1824	6510	42910;42911;42912;42913;42914	58230;58231;58232;58233;58234;58235;58236;58237;58238;58239;58240	58230			11	
DDEAAAVALSSLIHALDDLDMVAIVR	0	Unmodified	2722.3847	0.38474562	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.38	98.662	3	8.7313E-131	58399	160513_QHF_FH_JSI10Kac_6	257.51	244.38			0.79896	0.93083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79896	0.93083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194310000	111070000	83242000	0	0	0	194310000	111070000	83242000	0	0	0	0	0	0	6893	1024	6511	42915	58241;58242	58242			2	
DDEAEWQELQQSIQR	0	Unmodified	1873.8442	0.84423422	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	76.15	75.605	2;3	0.00012556	68718	160511_QHF_FH_JSI10i_1	56.872	53.819			0.70612	0.71749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70612	0.71749	NaN	1	1	Median	18339000	12945000	5393900	0	0	0	0	0	0	0	0	0	18339000	12945000	5393900	6894	5285	6512	42916;42917	58243;58244	58244			2	
DDEAVVQAPR	0	Unmodified	1098.5306	0.53055165	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12	0					2							1	1	32.353	23.899	2	0.00031781	11766	160513_QHF_FH_JSI12Kac_2	90.657	81.443			1.1958	1.2385	19.122	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4418	1.4178	NaN	1	0	Median	0.9918	1.0819	NaN	1	0	Median	2555200	1305500	1249600	0	0	0	0	0	0	1148300	606840	541470	1406900	698710	708170	6895	1443	6513	42918;42919	58245;58246;58247;58248	58248			4	
DDEEADAIYAALDK	1	Unmodified	1537.6784	0.67839767	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	79.85	79.227	2	0.00041849	72007	160511_QHF_FH_JSI12i_1	97.463	79.654			0.79976	0.72875	32.482	5	5	Median	0.69994	0.59582	28.482	2	2	Median	NaN	NaN	NaN	0	0	Median	0.79976	0.76709	NaN	1	1	Median	0.66292	0.67697	54.414	2	2	Median	147660000	84046000	63617000	57577000	27946000	29631000	0	0	0	31641000	19162000	12479000	58444000	36937000	21507000	6896	623	6514	42920;42921;42922;42923;42924	58249;58250;58251;58252;58253;58254	58250			6	
DDEEEDPLDQLISR	0	Unmodified	1672.7428	0.74278885	5127	Q9NYJ1	COA4	Cytochrome c oxidase assembly factor 4 homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		84.064	83.808	2	0.0084658	76003	160511_QHF_FH_JSI10i_1	59.57	55.524			0.46747	0.48766	6.2717	2	2	Median	NaN	NaN	NaN	0	0	Median	0.41352	0.4665	NaN	1	1	Median	0.52847	0.50977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56505000	40948000	15557000	0	0	0	30591000	21675000	8916200	25913000	19273000	6640600	0	0	0	6897	5127	6515	42925;42926	58255;58256	58256			2	
DDEENYLDLFSHK	1	Unmodified	1623.7053	0.70528113	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		76.092	75.601	2;3	0.00023091	68360	160511_QHF_FH_JSI10i_1	78.548	69.116			1.7179	1.9656	29.78	5	2	Median	1.9453	1.619	44.632	2	1	Median	1.3883	1.6036	28.786	2	0	Median	2.2359	2.1777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176880000	78492000	98384000	84917000	36168000	48748000	78078000	39337000	38742000	13881000	2986900	10894000	0	0	0	6898	2255	6516	42927;42928;42929;42930;42931	58257;58258;58259;58260	58258			3	
DDEFTHLYTLIVRPDNTYEVK	1	Unmodified	2567.2544	0.25438337	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.38	1	15	8						11	8	8	12	7	96.462	93.928	2;3;4	1.2478E-47	44472	160513_QHF_FH_JSI11Kac_6	185.09	172.96			1.006	1.0275	13.478	34	12	Median	1.1222	0.94221	10.257	7	2	Median	0.92038	1.0922	7.2995	8	4	Median	1.1392	1.0778	13.093	12	5	Median	0.87801	0.95153	7.4757	7	1	Median	18767000000	9343300000	9423800000	3231800000	1645300000	1586500000	5484100000	2826100000	2658000000	5927400000	2695500000	3231900000	4123800000	2176400000	1947400000	6899	1297	6517	42932;42933;42934;42935;42936;42937;42938;42939;42940;42941;42942;42943;42944;42945;42946;42947;42948;42949;42950;42951;42952;42953;42954;42955;42956;42957;42958;42959;42960;42961;42962;42963;42964;42965;42966	58261;58262;58263;58264;58265;58266;58267;58268;58269;58270;58271;58272;58273;58274;58275;58276;58277;58278;58279;58280;58281;58282;58283;58284;58285;58286;58287;58288;58289;58290;58291;58292;58293;58294;58295;58296;58297;58298;58299;58300;58301;58302;58303;58304;58305;58306;58307;58308;58309;58310;58311;58312;58313;58314;58315;58316;58317;58318;58319;58320;58321;58322;58323;58324;58325	58280			65	
DDEFYQQWQLK	1	Unmodified	1498.6729	0.67285879	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	73.051	72.596	2	9.1289E-06	66012	160511_QHF_FH_JSI11i_1	111.39	70.943			1.9976	1.9829	16.717	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.828	1.7618	NaN	1	1	Median	2.183	2.2317	NaN	1	1	Median	116070000	37177000	78888000	0	0	0	0	0	0	46149000	15706000	30444000	69916000	21472000	48444000	6900	4578	6518	42967;42968	58326;58327	58326			2	
DDESLRK	1	Unmodified	861.41921	0.41921028	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	5.912	5.5553	2;3	0.011814	3426	160511_QHF_FH_JSI11i_1	43.124	7.5052			1.1315	1.128	21.657	6	0	Median	1.4311	1.1862	9.8187	2	0	Median	1.1315	1.3348	21.098	2	0	Median	0.88976	0.85088	NaN	1	0	Median	0.88488	0.92479	NaN	1	0	Median	1317100000	591990000	725150000	407400000	180640000	226750000	599030000	291640000	307390000	155760000	72551000	83207000	154960000	47160000	107800000	6901	1773	6519	42969;42970;42971;42972;42973;42974	58328;58329;58330;58331	58328			4	
DDESNLVEEK	1	Unmodified	1176.5146	0.51462681	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.925	24.386	2	1.0331E-05	21629	160511_QHF_FH_JSI12i_1	114.86	80.606			1.1684	1.2255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1684	1.2255	NaN	1	1	Median	29628000	12494000	17134000	0	0	0	0	0	0	0	0	0	29628000	12494000	17134000	6902	2258	6520	42975	58332	58332			1	
DDEVAQLK	1	Unmodified	916.45018	0.45017606	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	5.64	6				5	2				1	5	4	3	27.718	23.031	2	0.00035112	20522	160511_QHF_FH_JSI11i_1	131.04	90.934			1.3514	1.2112	80.13	13	11	Median	1.3514	1.0805	NaN	1	0	Median	0.56154	0.66815	105.29	5	5	Median	1.747	1.69	86.693	4	4	Median	1.1375	1.2112	65.581	3	2	Median	5389400000	2925900000	2463500000	948380000	460820000	487560000	1481100000	795320000	685770000	1635800000	987390000	648390000	1324200000	682420000	641730000	6903	864	6521	42976;42977;42978;42979;42980;42981;42982;42983;42984;42985;42986;42987;42988	58333;58334;58335;58336;58337;58338;58339;58340;58341;58342;58343;58344;58345;58346;58347	58334			15	
DDEVAQLKK	2	Unmodified	1044.5451	0.54513908	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	18.772	18.277	2	6.5551E-05	15875	160511_QHF_FH_JSI12i_1	118.5	74.146			0.71095	0.70001	132.09	8	8	Median	0.87383	0.71967	137.04	2	2	Median	0.54063	0.63075	147.86	2	2	Median	0.63439	0.61377	216.53	2	2	Median	0.86688	0.88397	181.47	2	2	Median	720870000	437540000	283330000	159720000	99706000	60010000	194310000	126120000	68183000	155430000	89928000	65504000	211420000	121780000	89635000	6904	864	6522	42989;42990;42991;42992;42993;42994;42995;42996	58348;58349;58350;58351;58352;58353;58354;58355	58351			8	
DDEVQVVR	0	Unmodified	958.47197	0.47197413	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.62	4	1			3	4				2	3	4	3	25.174	19.629	2	1.2399E-16	12705	160513_QHF_FH_JSI11Kac_3	172.14	126.43			0.97599	0.98202	13.188	12	0	Median	1.2925	1.0713	23.097	2	0	Median	0.81599	0.96916	8.9423	3	0	Median	1.0365	1.0209	11.343	4	0	Median	0.84075	0.89191	17.347	3	0	Median	8213500000	3840800000	4372700000	2153400000	829970000	1323500000	1898100000	969270000	928820000	2072500000	948950000	1123500000	2089500000	1092600000	996900000	6905	1949;5450	6523	42997;42998;42999;43000;43001;43002;43003;43004;43005;43006;43007;43008	58356;58357;58358;58359;58360;58361;58362;58363;58364;58365;58366;58367;58368;58369;58370;58371;58372;58373;58374;58375;58376	58363			21	
DDFLQQNGYTPYDR	0	Unmodified	1730.7536	0.7536283	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.81	59.318	2	8.9787E-52	53865	160511_QHF_FH_JSI12i_1	213.63	194.89			0.86002	0.88608	14.385	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92007	1.0898	NaN	1	0	Median	0.84072	0.82649	NaN	1	0	Median	0.86002	0.88608	NaN	1	0	Median	351050000	198820000	152230000	0	0	0	133450000	76954000	56494000	118210000	64549000	53666000	99390000	57319000	42072000	6906	1479	6524	43009;43010;43011	58377;58378;58379;58380	58379			4	
DDFTEER	0	Unmodified	910.36684	0.36684036	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.86	14.616	2	0.019471	12239	160511_QHF_FH_JSI10i_1	58.286	28.976			1.0592	1.2623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0592	1.2623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76846000	32777000	44069000	0	0	0	76846000	32777000	44069000	0	0	0	0	0	0	6907	1196	6525	43012	58381	58381			1	
DDFTEFGK	1	Unmodified	957.40798	0.40797689	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9	5.66	1					2				1	1	1		51.084	44.364	2	0.0014529	39555	160511_QHF_FH_JSI9i_1	89.296	75.31			1.3355	1.077	34.205	3	0	Median	1.3355	1.077	NaN	1	0	Median	1.4547	1.6973	NaN	1	0	Median	0.91081	0.86859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243440000	110980000	132460000	236280000	107500000	128780000	2412800	1154800	1258000	4743700	2326500	2417200	0	0	0	6908	571	6526	43013;43014;43015	58382;58383;58384	58383			3	
DDGISFSNQTGPAWAGSER	0	Unmodified	1993.8766	0.87659699	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.03	64.416	2	1.8851E-237	58393	160511_QHF_FH_JSI10i_1	348.73	340.62			1.3336	1.0939	10.591	4	0	Linear	1.3536	1.1185	NaN	1	0	Median	0.9668	1.1281	NaN	1	0	Median	1.1044	1.0698	NaN	1	0	Median	0.87569	0.89885	NaN	1	0	Median	305260000	140230000	165030000	89138000	36912000	52226000	72329000	34386000	37943000	78733000	33198000	45535000	65058000	35732000	29325000	6909	1169	6527	43016;43017;43018;43019	58385;58386;58387;58388	58387			4	
DDGISFSNQTGPAWAGSERDYTYEELLNR	0	Unmodified	3290.4752	0.4752282	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	90.488	90.422	3	4.4319E-06	78419	160511_QHF_FH_JSI12i_3	51.586	49.448			1.049	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.049	1.0863	NaN	1	0	Median	22933000	10833000	12100000	0	0	0	0	0	0	0	0	0	22933000	10833000	12100000	6910	1169	6528	43020;43021;43022	58389;58390;58391;58392	58391			4	
DDGLFSGDPNWFPK	1	Unmodified	1593.71	0.70997257	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.26	0.529	18	4	1							7	5	5	6	95.294	94.911	2;3	1.8012E-40	83697	160511_QHF_FH_JSI9i_1	208.56	181.77			0.95536	0.93479	28.661	20	4	Median	1.0192	0.80671	20.805	7	2	Median	0.77113	0.92334	13.475	4	0	Median	0.96842	0.93424	14.184	4	0	Median	0.94735	0.96802	46.188	5	2	Median	7758600000	3656800000	4101800000	1273900000	510250000	763600000	2163400000	1076800000	1086600000	2603300000	1234200000	1369100000	1718000000	835590000	882420000	6911	1470	6529	43023;43024;43025;43026;43027;43028;43029;43030;43031;43032;43033;43034;43035;43036;43037;43038;43039;43040;43041;43042;43043;43044;43045	58393;58394;58395;58396;58397;58398;58399;58400;58401;58402;58403;58404;58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432;58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456;58457;58458;58459;58460	58439			67	
DDGLFSGDPNWFPKK	2	Unmodified	1721.8049	0.80493559	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	5	3	3	79.925	79.285	2;3	9.7871E-05	68288	160511_QHF_FH_JSI12i_2	73.887	62.273			0.80141	0.83201	42.763	12	5	Median	1.1918	1.0146	0.069718	2	1	Median	0.51463	0.62443	54.804	5	3	Median	0.743	0.73792	10.905	2	0	Median	1.1301	1.2501	18.613	3	1	Plateau	750400000	438970000	311430000	93524000	47107000	46417000	305090000	197600000	107500000	183750000	115460000	68291000	168030000	78800000	89229000	6912	1470	6530	43046;43047;43048;43049;43050;43051;43052;43053;43054;43055;43056;43057;43058	58461;58462;58463;58464;58465;58466;58467;58468;58469;58470;58471;58472;58473;58474;58475;58476;58477;58478;58479;58480	58462			20	
DDGNQPQDQITITGYEK	1	Unmodified	1920.8701	0.87011462	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	53.448	52.836	2	1.5396E-15	46902	160511_QHF_FH_JSI9i_1	160.48	152.76			1.3276	1.0511	5.6481	5	2	Linear	1.3207	1.076	NaN	1	0	Median	0.83198	0.99038	8.4179	2	2	Median	1.0816	1.0577	NaN	1	0	Median	0.96876	1.0275	NaN	1	0	Median	337020000	159530000	177490000	68036000	30287000	37749000	163280000	81213000	82071000	56367000	22664000	33703000	49329000	25366000	23962000	6913	2147	6531	43059;43060;43061;43062;43063;43064	58481;58482;58483;58484;58485;58486;58487;58488;58489	58489			9	
DDGSAVIWVTFK	1	Unmodified	1336.6663	0.66631685	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	89.129	88.846	2	1.2871E-14	80822	160511_QHF_FH_JSI12i_1	139.86	125.36			0.91562	1.0097	6.3891	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88693	1.0563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94525	0.96508	NaN	1	1	Median	132100000	72608000	59488000	0	0	0	75340000	44161000	31179000	0	0	0	56756000	28447000	28309000	6914	2487	6532	43065;43066;43067	58490;58491;58492;58493	58492			4	
DDGSTLMEIDGDK	1	Unmodified	1394.5871	0.58713983	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.245	51.576	2	5.1855E-06	46745	160511_QHF_FH_JSI11i_1	125.72	100.94			2.9815	2.7072	41.652	4	3	Median	2.9	2.4097	NaN	1	1	Median	3.0654	3.5999	NaN	1	1	Median	3.1042	3.0414	NaN	1	1	Median	1.3532	1.3849	NaN	1	0	Median	323640000	85305000	238340000	98256000	22464000	75793000	107850000	27093000	80762000	90966000	23913000	67053000	26567000	11835000	14732000	6915	758	6533	43068;43069;43070;43071	58494;58495;58496;58497	58494			4	
DDGSWEVIEGYR	0	Unmodified	1424.6208	0.62082322	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	68.793	68.282	2	2.0999E-28	61943	160511_QHF_FH_JSI11i_1	159.83	146.06			1.1141	0.98264	43.726	5	3	Median	1.1141	0.91724	NaN	1	0	Median	0.54144	0.64148	60.311	2	1	Median	1.1447	1.1256	NaN	1	1	Median	1.2632	1.2776	NaN	1	1	Median	464800000	227230000	237570000	71418000	34661000	36757000	144950000	81558000	63393000	117330000	64950000	52378000	131100000	46063000	85040000	6916	762	6534	43072;43073;43074;43075;43076;43077;43078;43079;43080	58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508;58509;58510	58499			13	
DDGTVIHFNNPK	1	Unmodified	1355.647	0.64697839	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	5.44	9	1					3			3	3	4	3	41.325	38.217	2;3	4.087E-06	34359	160511_QHF_FH_JSI11i_1	90.697	81.264			0.86758	0.88021	31.46	12	6	Median	1.161	0.96182	44.076	3	2	Plateau	0.86985	1.0195	11.973	3	2	Plateau	0.89887	0.89401	20.696	3	1	Median	0.8022	0.84259	41.277	3	1	Median	1716500000	783010000	933490000	361620000	171910000	189710000	413840000	185420000	228420000	561720000	240460000	321260000	379310000	185220000	194100000	6917	4146	6535	43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091;43092;43093	58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521;58522;58523;58524;58525;58526;58527;58528;58529;58530	58511			20	
DDGVFVQEVTQNSPAAR	0	Unmodified	1831.8701	0.87005504	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.442	65.841	2;3	6.455E-99	59933	160511_QHF_FH_JSI11i_1	266.97	240.93			1.0055	0.85043	13.919	8	0	Linear	1.2456	1.0314	23.043	2	0	Median	0.81819	0.95304	4.4239	2	0	Median	1.0578	1.0371	16.337	2	0	Median	1.0177	1.0649	20.033	2	0	Median	883910000	476490000	407430000	208150000	100880000	107270000	236860000	143100000	93760000	264300000	138790000	125500000	174610000	93722000	80888000	6918	2286	6536	43094;43095;43096;43097;43098;43099;43100;43101	58531;58532;58533;58534;58535;58536;58537;58538;58539;58540;58541	58532			11	
DDGVSIPGEYTSFLAPISSSK	1	Unmodified	2169.0477	0.047744639	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	101.04	100.93	2;3	9.0038E-18	91617	160511_QHF_FH_JSI11i_1	150.57	137.17			0.98347	0.96983	7.4317	7	1	Median	1.2146	1.0001	5.1742	2	1	Median	0.8331	0.98546	7.5253	2	0	Median	1.0331	1.018	6.8626	2	0	Median	0.83981	0.86255	NaN	1	0	Median	1069000000	537320000	531730000	208580000	87911000	120670000	354420000	198750000	155670000	317850000	152310000	165540000	188200000	98345000	89850000	6919	197	6537	43102;43103;43104;43105;43106;43107;43108	58542;58543;58544;58545;58546;58547;58548;58549;58550	58542			9	
DDGYSTK	1	Unmodified	784.32391	0.32391291	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.5654	5.3357	2	0.0072267	3303	160511_QHF_FH_JSI12i_1	89.55	16.511			3.0673	3.0088	29.468	3	2	Median	NaN	NaN	NaN	0	0	Median	3.0673	3.6032	NaN	1	0	Median	3.0804	3.0088	NaN	1	1	Median	1.9279	2.0254	NaN	1	1	Median	1194400000	259720000	934650000	0	0	0	357000000	81665000	275340000	388230000	75316000	312920000	449130000	102740000	346390000	6920	1474	6538	43109;43110;43111	58551;58552;58553	58552			3	
DDIAQVDYVEPSQNTISLK	1	Unmodified	2134.043	0.042993612	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	1	3	74.319	73.746	2;3	9.3403E-18	65499	160511_QHF_FH_JSI9i_1	191.49	170.19			0.92672	0.93545	88.255	7	2	Median	0.72343	0.60511	36.779	2	0	Median	0.82352	0.93545	NaN	1	0	Median	0.90233	0.86071	NaN	1	0	Median	1.0734	1.1143	101.94	3	2	Plateau	493140000	115240000	377890000	53694000	31119000	22575000	34730000	17553000	17178000	38524000	20524000	18000000	366190000	46047000	320140000	6921	116	6539	43112;43113;43114;43115;43116;43117;43118	58554;58555;58556;58557;58558;58559;58560;58561;58562;58563;58564;58565;58566;58567	58565			14	
DDIENMVK	1	Unmodified	962.4379	0.43789681	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.74	5				3	3				2	3	3	3	44.321	39.34	2	8.4844E-07	35816	160511_QHF_FH_JSI12i_1	151.27	92.064			0.95578	1.0292	35.876	10	1	Median	0.85963	0.68529	88.711	2	1	Median	0.84523	1.0156	9.5699	3	0	Median	1.067	1.0461	7.3684	2	0	Median	1.0178	1.0834	14.945	3	0	Median	8582900000	4332200000	4250700000	2293700000	1263000000	1030700000	2290400000	1138900000	1151500000	2173800000	1002300000	1171500000	1825000000	927980000	897020000	6922	1480	6540	43119;43120;43121;43122;43123;43124;43125;43126;43127;43128;43129	58568;58569;58570;58571;58572;58573;58574;58575;58576;58577;58578;58579;58580;58581;58582;58583;58584;58585;58586;58587;58588;58589;58590	58575			23	
DDIENMVK	1	Oxidation (M)	978.43281	0.43281144	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	3	4.47	5					1				2		1	3	33.437	31.201	2	0.00025786	35808	160511_QHF_FH_JSI12i_1	113.41	68.69			0.9413	0.94448	139.53	4	1	Median	1.0839	0.88778	240.94	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0852	1.07	NaN	1	0	Median	0.81647	0.8337	NaN	1	1	Median	601410000	324390000	277020000	446040000	216100000	229940000	0	0	0	12573000	5268800	7304200	142800000	103020000	39781000	6923	1480	6540	43130;43131;43132;43133;43134;43135	58591;58592;58593;58594;58595;58596;58597	58593		1151	7	
DDIENMVKNAEK	2	Acetyl (K);Oxidation (M)	1462.661	0.66097347	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	1	1			By MS/MS		13	0						2						2		51.976	42.461	2	0.0011141	23231	160513_QHF_FH_JSI11Kac_3	80.979	64.841			0.054438	0.053821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.054438	0.053821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2221800	1985700	236120	0	0	0	0	0	0	2221800	1985700	236120	0	0	0	6924	1480	6541	43136;43137	58598;58599	58598	1468;1469	1151	1	
DDIIEFAHR	0	Unmodified	1114.5407	0.5407224	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.026	46.513	3	0.014639	39910	160511_QHF_FH_JSI11i_2	33.19	28.092			1.1501	1.1194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1501	1.1194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14010000	5988400	8021900	0	0	0	0	0	0	14010000	5988400	8021900	0	0	0	6925	4142	6542	43138	58600	58600			1	
DDIIENAPTTHTEEYSGEEK	1	Unmodified	2276.9921	0.99208025	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	43.049	42.55	3	3.2808E-10	38480	160511_QHF_FH_JSI11i_1	116.98	109.02			0.90112	0.89992	27.971	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1483	1.0967	NaN	1	0	Median	0.70713	0.73842	NaN	1	0	Median	82237000	42916000	39321000	0	0	0	0	0	0	46731000	22812000	23919000	35506000	20104000	15402000	6926	197	6543	43139;43140	58601;58602	58601			2	
DDIINIFSVASGHLYER	0	Unmodified	1947.969	0.96904081	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	92.453	83.011	3	0.040801	44792	160513_QHF_FH_JSI12Kac_6	23.63	13.842			1.9229	2.0489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9229	2.0489	NaN	1	0	Median	40211000	13121000	27090000	0	0	0	0	0	0	0	0	0	40211000	13121000	27090000	6927	5135	6544	43141	58603	58603			1	
DDILNGSHPVSFDK	1	Unmodified	1542.7314	0.7314363	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	52.97	52.302	2;3	3.2886E-07	46401	160511_QHF_FH_JSI9i_1	116.43	87.625			0.96806	0.99334	18.974	11	6	Median	1.1497	0.93845	23.524	3	2	Median	0.88554	1.032	23.881	3	2	Median	0.96806	0.95506	18.04	3	2	Median	0.96338	0.99941	0.86137	2	0	Median	1095300000	536450000	558890000	205890000	92913000	112980000	278270000	137230000	141040000	343030000	173810000	169220000	268140000	132500000	135640000	6928	5616	6545	43142;43143;43144;43145;43146;43147;43148;43149;43150;43151;43152	58604;58605;58606;58607;58608;58609;58610;58611;58612;58613;58614;58615;58616;58617;58618	58613			15	
DDIPVFLR	0	Unmodified	973.52328	0.52328142	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	73.8	72.015	2	0.00052479	65692	160511_QHF_FH_JSI10i_1	105.39	71.652			0.89512	1.0419	18.631	9	1	Median	1.0824	0.93266	23.386	2	0	Median	0.8187	0.97602	9.2326	2	0	Median	0.85513	0.84677	38.109	2	0	Median	0.98298	1.0519	13.837	3	1	Median	1590300000	805810000	784490000	365320000	162420000	202890000	388480000	221780000	166700000	445720000	212750000	232970000	390800000	208860000	181930000	6929	5227	6546	43153;43154;43155;43156;43157;43158;43159;43160;43161;43162	58619;58620;58621;58622;58623;58624;58625;58626;58627;58628;58629;58630;58631;58632;58633;58634;58635	58626			17	
DDIQKMNPPK	2	Acetyl (K);Oxidation (M)	1242.5914	0.59143734	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	11.9	0.34				2	13						4	4	7	27.269	19.871	2;3	1.0703E-24	9817	160513_QHF_FH_JSI12Kac_2	180.8	101.2			0.85609	0.95363	20.275	14	0	Median	NaN	NaN	NaN	0	0	Median	0.75716	0.90517	13.519	4	0	Median	0.81487	0.78123	28.721	4	0	Median	1.0659	1.1229	15.965	6	0	Median	103900000	54825000	49077000	0	0	0	32086000	17525000	14561000	24938000	12806000	12132000	46878000	24494000	22384000	6930	1436;1437;1445	6547	43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177	58636;58637;58638;58639;58640;58641;58642;58643;58644;58645;58646;58647;58648;58649;58650;58651;58652;58653;58654;58655;58656;58657;58658;58659;58660	58655	1398;1417	1093;1112	25	
DDIQKMNPPK	2	Acetyl (K)	1226.5965	0.59652272	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.8	0.433				2	6						5	2	1	43.277	34.308	2;3	8.5612E-25	15512	160513_QHF_FH_JSI10Kac_2	185.97	150.46			0.90069	1.0135	78.529	8	1	Median	NaN	NaN	NaN	0	0	Median	0.79651	0.89893	99.161	5	1	Median	1.0254	0.96465	29.179	2	0	Median	1.0925	1.1426	NaN	1	0	Median	43435000	24866000	18569000	0	0	0	23875000	15284000	8590400	9204000	4461000	4743000	10356000	5120600	5235700	6931	1436;1437;1445	6547	43178;43179;43180;43181;43182;43183;43184;43185	58661;58662;58663;58664;58665;58666;58667;58668;58669;58670;58671;58672;58673	58666	1398;1417		13	
DDISKLR	1	Acetyl (K)	887.47125	0.47124585	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	38.599	29.989	2	0.038051	17015	160513_QHF_FH_JSI12Kac_3	65.252	39.313			0.83813	0.93002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83813	0.93002	NaN	1	0	Median	14589000	8007100	6581700	0	0	0	0	0	0	0	0	0	14589000	8007100	6581700	6932	4983	6548	43186	58674	58674			1	
DDITGEPLIR	0	Unmodified	1127.5823	0.58225287	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.66	2					4				1	1	2	2	56.575	50.604	2	3.3736E-05	45096	160511_QHF_FH_JSI9i_1	96.034	74.074			0.98685	0.98112	32.805	5	2	Median	1.2261	0.98112	NaN	1	0	Median	0.83516	0.98752	NaN	1	0	Median	1.0874	1.0559	13.719	2	1	Median	0.45838	0.49974	NaN	1	1	Median	621670000	259740000	361930000	252000000	115610000	136390000	2466000	1595800	870150	363200000	139580000	223610000	4004500	2946600	1057900	6933	1835	6549	43187;43188;43189;43190;43191;43192	58675;58676;58677;58678;58679;58680;58681	58678			7	
DDITGEPLIRR	0	Unmodified	1283.6834	0.68336389	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	41.206	39.836	3	0.0010394	34072	160511_QHF_FH_JSI12i_2	54.784	43.571			0.94628	1.0417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94628	1.0417	NaN	1	0	Median	75112000	35114000	39998000	0	0	0	0	0	0	0	0	0	75112000	35114000	39998000	6934	1835	6550	43193	58682;58683	58682			2	
DDIVPWHTSMQVADR	0	Unmodified	1768.8203	0.82026808	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.376	64.828	2	0.0081452	55700	160511_QHF_FH_JSI12i_2	48.741	33.169			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6918700	0	6918700	0	0	0	0	0	0	6918700	0	6918700	0	0	0	6935	5002	6551	43194;43195	58684;58685	58684			2	
DDLENVK	1	Unmodified	831.39741	0.39741221	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	16.955	16.45	2	0.003941	9785	160513_QHF_FH_JSI11Kac_3	80.462	33.799			0.81468	0.77795	78.343	4	3	Median	0.5513	0.46161	NaN	1	1	Median	0.87104	1.0324	110.97	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2039	1.2848	NaN	1	0	Median	1959200000	1048800000	910440000	347040000	171440000	175600000	942040000	513090000	428950000	0	0	0	670130000	364230000	305890000	6936	841	6552	43196;43197;43198;43199;43200	58686;58687;58688;58689;58690;58691	58687			6	
DDLLGFALR	0	Unmodified	1018.5447	0.54474515	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	3	1	85.944	85.441	2	0.00067508	77872	160511_QHF_FH_JSI11i_1	86.953	76.539			0.84409	0.77714	30.411	7	5	Median	0.65295	0.5585	38.931	2	2	Median	0.73413	0.88508	34.03	2	0	Median	0.8407	0.82831	9.0187	2	2	Median	0.90805	0.89963	NaN	1	1	Median	120730000	59668000	61059000	22936000	13506000	9429500	37871000	19958000	17912000	44378000	19869000	24510000	15542000	6334800	9207000	6937	5697	6553	43201;43202;43203;43204;43205;43206;43207;43208	58692;58693;58694;58695;58696;58697;58698;58699;58700	58692			9	
DDLPGVYQK	1	Unmodified	1033.508	0.50802529	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				37.429	36.206	2	0.0026882	31956	160511_QHF_FH_JSI9i_1	73.26	49.105			1.2462	1.008	NaN	1	1	Median	1.2462	1.008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49236000	33466000	15770000	49236000	33466000	15770000	0	0	0	0	0	0	0	0	0	6938	3117	6554	43209	58701	58701			1	
DDLSFAGYQK	1	Unmodified	1142.5244	0.52440364	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	57.648	48.048	2	0.011627	25526	160513_QHF_FH_JSI12Kac_3	56.729	24.795			0.98315	1.0513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98315	1.0513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	866200	509430	356770	0	0	0	0	0	0	866200	509430	356770	0	0	0	6939	3053	6555	43210;43211	58702;58703	58703			2	
DDLSGADIK	1	Unmodified	932.44509	0.44509068	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	2	4	2	29.789	25.182	2	1.6815E-06	22561	160511_QHF_FH_JSI11i_1	130.75	95.452			1.662	1.6194	61.116	7	4	Median	2.3712	1.9467	NaN	1	1	Median	0.88642	1.0224	23.654	2	0	Median	1.662	1.6194	84.813	3	2	Median	2.0801	2.2034	NaN	1	1	Median	1767300000	555520000	1211800000	374360000	85027000	289330000	348710000	179370000	169340000	269960000	128880000	141080000	774280000	162240000	612040000	6940	1983	6556	43212;43213;43214;43215;43216;43217;43218;43219;43220	58704;58705;58706;58707;58708;58709;58710;58711;58712;58713	58704			10	
DDLVTVK	1	Unmodified	788.42798	0.42798405	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	29.373	27.457	2	0.012047	24775	160511_QHF_FH_JSI12i_1	69.998	7.2812			1.2399	1.3687	77.828	6	4	Median	3.0058	2.5151	NaN	1	1	Median	1.6596	1.9429	NaN	1	0	Median	1.4034	1.3755	99.576	3	3	Plateau	0.92633	0.96414	NaN	1	0	Median	735940000	319120000	416820000	146240000	50563000	95679000	157010000	71047000	85961000	283430000	122970000	160460000	149260000	74540000	74718000	6941	1465	6557	43221;43222;43223;43224;43225;43226	58714;58715;58716;58717;58718;58719;58720	58717			7	
DDMPAPLLK	1	Unmodified	998.51067	0.51066783	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		55.883	55.226	2	0.0015379	49859	160511_QHF_FH_JSI10i_1	77.282	63.28			0.78607	0.74943	7.2511	3	1	Plateau	0.86315	0.73559	NaN	1	0	Median	0.57274	0.65553	NaN	1	1	Median	0.78607	0.74943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106390000	54823000	51567000	32403000	14145000	18259000	35580000	23428000	12152000	38406000	17250000	21156000	0	0	0	6942	4382	6558	43227;43228;43229	58721;58722;58723	58722			1	
DDNFGEGNDGGILDDK	1	Unmodified	1679.6911	0.69108763	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	54.086	53.555	2	1.3045E-21	48652	160511_QHF_FH_JSI12i_1	132.97	117.76			1.0684	1.1618	30.481	2	2	Median	NaN	NaN	NaN	0	0	Median	1.281	1.4412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89109	0.93653	NaN	1	1	Median	95125000	49400000	45724000	0	0	0	32630000	14038000	18592000	0	0	0	62495000	35362000	27133000	6943	396	6559	43230;43231;43232;43233	58724;58725;58726;58727	58725			4	
DDNGVPFVR	0	Unmodified	1017.488	0.48795855	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	45.345	44.807	2	0.00043912	40687	160511_QHF_FH_JSI12i_1	80.684	53.721			0.88928	0.97357	24.455	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99183	1.1574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79733	0.81897	NaN	1	0	Median	184210000	88018000	96188000	0	0	0	87515000	25307000	62208000	0	0	0	96690000	62711000	33980000	6944	944	6560	43234;43235	58728;58729	58728			2	
DDNMFQIGK	1	Unmodified	1066.4753	0.47534495	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	3	2	2	57.521	52.472	2	2.7923E-16	47477	160511_QHF_FH_JSI11i_1	173.23	112.45			0.99482	0.97487	41.83	8	3	Median	1.263	1.005	NaN	1	0	Median	0.79291	0.94566	44.269	3	2	Median	0.99482	0.97903	11.237	2	0	Median	1.3264	1.4243	77.996	2	1	Median	3450100000	1709800000	1740200000	969990000	409200000	560790000	726520000	399290000	327230000	895830000	460650000	435180000	857750000	440700000	417050000	6945	1815	6561	43236;43237;43238;43239;43240;43241;43242;43243	58730;58731;58732;58733;58734;58735;58736;58737;58738;58739;58740;58741;58742;58743;58744;58745;58746;58747;58748;58749;58750;58751	58732			22	
DDNMFQIGK	1	Oxidation (M)	1082.4703	0.47025958	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						4						1	3	43.072	34.196	2	0.0054407	19595	160513_QHF_FH_JSI11Kac_3	61.962	54.395			0.91251	0.95532	47.843	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82452	0.82204	NaN	1	0	Median	1.0099	1.1102	53.927	3	2	Median	13212000	6376600	6835200	0	0	0	0	0	0	5346900	2648500	2698400	7864900	3728100	4136800	6946	1815	6561	43244;43245;43246;43247	58752;58753;58754;58755	58752		1501	4	
DDNMFQIGKMR	1	Acetyl (K)	1395.6275	0.62750527	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	77.254	66.696	2	6.1575E-11	35380	160513_QHF_FH_JSI10Kac_4	138.11	88.301			0.72153	0.80924	12.487	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74989	0.88394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69424	0.74085	NaN	1	0	Median	8498000	4476200	4021800	0	0	0	5061900	2603100	2458800	0	0	0	3436100	1873100	1563100	6947	1815	6562	43248;43249;43250	58756;58757;58758;58759;58760	58757	1834		5	
DDNMFQIGKMR	1	Acetyl (K);Oxidation (M)	1411.6224	0.6224199	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	1	1		By MS/MS			14	0							1				1			67.861	57.188	2	0.037831	30866	160513_QHF_FH_JSI10Kac_4	55.567	45.335			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6948	1815	6562	43251	58761	58761	1834	1501	1	
DDNSAANNSANEK	1	Unmodified	1348.5491	0.54911484	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	5	1			1								1	1	5.07	1.1379	2	6.4468E-17	2600	160511_QHF_FH_JSI12i_1	213.16	192.86			0.79211	0.80328	39.14	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0533	1.0594	NaN	1	1	Median	0.59571	0.60908	NaN	1	1	Median	70343000	36681000	33662000	0	0	0	0	0	0	1944600	833620	1111000	68399000	35848000	32551000	6949	2084	6563	43252;43253	58762;58763	58762			2	
DDPALATYYGSLFK	1	Unmodified	1559.7508	0.75077476	3397	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			93.861	93.851	2	0.0012628	85054	160511_QHF_FH_JSI10i_1	64.64	55.636			1.5576	1.8546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5576	1.8546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36767000	15440000	21327000	0	0	0	36767000	15440000	21327000	0	0	0	0	0	0	6950	3397	6564	43254	58764	58764			1	
DDPENDNSELPTAK	1	Unmodified	1543.6638	0.66381024	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	6				2					1	2	1	4	31.149	28.585	2	3.4475E-06	25582	160511_QHF_FH_JSI10i_1	131.17	120.8			0.71641	0.73504	65.313	8	7	Median	0.85395	0.69718	NaN	1	1	Median	0.51622	0.6032	45.984	2	2	Median	0.62436	0.60713	NaN	1	1	Median	1.1611	1.2344	81.04	4	3	Median	722240000	396950000	325290000	126640000	64031000	62612000	214010000	128310000	85695000	145940000	78762000	67173000	235650000	125850000	109810000	6951	3922	6565	43255;43256;43257;43258;43259;43260;43261;43262	58765;58766;58767;58768;58769;58770;58771;58772	58769			8	
DDPHACYSTVFDK	1	Unmodified	1553.6457	0.64565776	50	CON__P02769			yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	43.694	43.143	2	0.0014901	39222	160511_QHF_FH_JSI12i_1	73.781	63.258		+	0.47111	0.45471	52.693	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47111	0.45471	NaN	1	1	Median	0.67987	0.69434	66.019	2	2	Median	64442000	39505000	24937000	0	0	0	0	0	0	28806000	21266000	7539400	35637000	18239000	17398000	6952	50	6566	43263;43264;43265	58773;58774;58775	58775			3	
DDPHLSSVPVVESEK	1	Unmodified	1636.7944	0.79443049	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	47.553	46.877	2;3	0.008031	41636	160511_QHF_FH_JSI9i_1	39.776	32.574			0.86368	0.85887	24.305	5	1	Median	1.0891	0.88564	NaN	1	0	Median	1.0237	1.2195	NaN	1	0	Median	0.69584	0.67666	NaN	1	0	Median	0.75221	0.76184	16.954	2	1	Median	224680000	117380000	107300000	35130000	13655000	21476000	44648000	19220000	25429000	74767000	40517000	34250000	70133000	43991000	26142000	6953	3156	6567	43266;43267;43268;43269;43270	58776;58777;58778;58779;58780	58780			4	
DDPLEFK	1	Unmodified	862.40725	0.40724861	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		45.493	45.089	2	0.049097	40799	160511_QHF_FH_JSI11i_1	47.849	31.294			1.5041	1.4685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5041	1.4685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57837000	21568000	36269000	0	0	0	0	0	0	57837000	21568000	36269000	0	0	0	6954	859	6568	43271	58781	58781			1	
DDPLTNLNTAFDVAEK	1	Unmodified	1761.8421	0.84210896	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	91.106	90.733	2;3	1.3161E-97	82621	160511_QHF_FH_JSI11i_1	257.95	240.09			0.90609	1.0257	41.564	9	2	Median	0.63997	0.53292	10.614	2	0	Median	0.62097	0.72821	34.012	3	2	Median	1.4112	1.3585	15.129	2	0	Median	1.1001	1.1371	5.4996	2	0	Median	554510000	310250000	244270000	121080000	83595000	37489000	159720000	109800000	49925000	127610000	45955000	81654000	146100000	70899000	75198000	6955	1021	6569	43272;43273;43274;43275;43276;43277;43278;43279;43280	58782;58783;58784;58785;58786;58787;58788;58789;58790;58791;58792;58793;58794;58795;58796;58797;58798;58799;58800	58784			19	
DDPPPPEDDENK	1	Unmodified	1366.5525	0.55246888	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.533	12.136	2	0.00070295	9968	160511_QHF_FH_JSI12i_1	79.974	72.846			0.43576	0.43482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43576	0.43482	NaN	1	1	Median	16480000	11628000	4851800	0	0	0	0	0	0	0	0	0	16480000	11628000	4851800	6956	2057	6570	43281	58801	58801			1	
DDPSAMDFVTSAANLR	0	Unmodified	1708.7726	0.77264919	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	87.683	87.238	2;3	4.1448E-30	79359	160511_QHF_FH_JSI12i_1	190.78	178.73			1.001	1.0082	12.493	8	0	Median	1.2167	1.0082	3.1751	2	0	Median	0.98908	1.1475	5.5536	2	0	Median	1.0676	1.0497	9.9446	2	0	Median	0.81899	0.8503	2.2453	2	0	Median	508750000	258610000	250140000	116840000	51707000	65129000	133180000	74979000	58203000	137160000	67942000	69214000	121570000	63979000	57596000	6957	5254	6571	43282;43283;43284;43285;43286;43287;43288;43289;43290	58802;58803;58804;58805;58806;58807;58808;58809;58810;58811	58805			10	
DDPSKPVHLTAFLGYK	2	Unmodified	1786.9254	0.92538508	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.52		14	6					1	10	7	7	10	7	69.793	66.129	2;3;4	1.4591E-32	34683	160513_QHF_FH_JSI9Kac_6	145.55	126.72			0.94023	0.96273	28.34	31	3	Median	1.1138	0.96273	25.164	7	0	Median	0.80451	0.9679	35.92	7	0	Median	0.9818	0.96252	33.925	10	3	Median	0.91676	0.95694	9.8493	7	0	Median	8154500000	3760900000	4393500000	914390000	445720000	468670000	1431900000	669220000	762650000	2749800000	1271500000	1478200000	3058400000	1374400000	1684000000	6958	1484	6572	43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301;43302;43303;43304;43305;43306;43307;43308;43309;43310;43311;43312;43313;43314;43315;43316;43317;43318;43319;43320;43321	58812;58813;58814;58815;58816;58817;58818;58819;58820;58821;58822;58823;58824;58825;58826;58827;58828;58829;58830;58831;58832;58833;58834;58835;58836;58837;58838;58839;58840;58841;58842;58843;58844;58845;58846;58847;58848;58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860;58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883;58884;58885;58886	58872			75	
DDPSKPVHLTAFLGYK	2	Acetyl (K)	1828.9359	0.93594977	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.195	73.668	3	0.000328	38851	160513_QHF_FH_JSI11Kac_5	70.98	59.288			0.23449	0.23016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23449	0.23016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11005000	8770200	2234900	0	0	0	0	0	0	11005000	8770200	2234900	0	0	0	6959	1484	6572	43322	58887	58887	1487		1	
DDPSTIEK	1	Unmodified	903.41854	0.41854158	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		13.477	13.032	2	0.00093466	10565	160511_QHF_FH_JSI11i_1	96.253	71.33			0.87648	0.85773	3.5127	3	0	Median	0.97983	0.81678	NaN	1	0	Median	0.75369	0.87437	NaN	1	0	Median	0.87648	0.85773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	634650000	361840000	272810000	204750000	112230000	92522000	207920000	129150000	78766000	221990000	120460000	101530000	0	0	0	6960	1924	6573	43323;43324;43325	58888;58889;58890;58891;58892	58889			5	
DDPTLLSSGR	0	Unmodified	1059.5197	0.51965261	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	2					2				1		1	2	38.184	33.265	2	0.0030977	30335	160511_QHF_FH_JSI12i_1	70.908	55.469			1.3858	1.2348	32.895	4	3	Median	1.7663	1.4582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0973	1.0457	NaN	1	0	Median	1.2514	1.3417	51.228	2	2	Median	180040000	81939000	98097000	99595000	44385000	55210000	0	0	0	2293100	945210	1347800	78148000	36608000	41539000	6961	1202	6574	43326;43327;43328;43329	58893;58894;58895;58896	58893			4	
DDPVTNLNNAFEVAEK	1	Unmodified	1774.8374	0.83735793	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	79.198	78.682	2;3	6.4077E-66	70078	160511_QHF_FH_JSI9i_1	271.79	254.84			0.80906	0.88275	49.701	10	5	Median	0.56723	0.46335	11.029	3	2	Median	0.63616	0.74249	15.472	2	1	Median	1.748	1.6976	0.91938	2	0	Median	0.98823	1.0347	7.5583	3	2	Median	1799400000	914950000	884410000	450240000	272230000	178010000	413180000	239130000	174050000	437140000	159050000	278090000	498790000	244530000	254260000	6962	361	6575	43330;43331;43332;43333;43334;43335;43336;43337;43338;43339	58897;58898;58899;58900;58901;58902;58903;58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914	58912			18	
DDQDGAFTK	1	Unmodified	995.4196	0.41960421	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	14.302	13.861	2	0.00018622	11538	160511_QHF_FH_JSI10i_1	103.55	44.565			0.68379	0.69348	33.395	4	4	Median	1.1228	0.91749	NaN	1	1	Median	0.43031	0.50189	NaN	1	1	Median	0.53509	0.52633	NaN	1	1	Median	0.87382	0.91371	NaN	1	1	Median	665990000	311620000	354370000	171860000	58622000	113240000	169650000	98905000	70741000	128200000	70986000	57210000	196290000	83106000	113180000	6963	2475	6576	43340;43341;43342;43343;43344	58915;58916;58917;58918;58919	58918			5	
DDQLLDDGK	1	Unmodified	1017.4615	0.46146903	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	32.164	28.257	2	3.9411E-08	25383	160511_QHF_FH_JSI12i_1	128.38	114.61			0.27878	0.29543	200.02	5	5	Median	0.2247	0.18301	NaN	1	1	Median	1.1843	1.3876	259.93	2	2	Median	8.7615	8.6664	NaN	1	1	Median	0.27878	0.29543	NaN	1	1	Median	985380000	694270000	291110000	280710000	191780000	88939000	406280000	287540000	118750000	6640300	1066100	5574200	291740000	213890000	77848000	6964	2659	6577	43345;43346;43347;43348;43349;43350	58920;58921;58922;58923;58924;58925	58922			6	
DDQPSAASSVNK	1	Unmodified	1217.5524	0.5524093	3186	Q6ZS17	FAM65A	Protein FAM65A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	11.878	11.529	2	0.00036722	9179	160511_QHF_FH_JSI11i_1	89.171	66.39			1.7323	1.4415	66.851	5	4	Median	1.7323	1.4415	NaN	1	0	Median	1.8237	2.0732	NaN	1	1	Median	0.96882	0.92752	97.841	2	2	Median	0.62954	0.63757	NaN	1	1	Median	117190000	59300000	57890000	23759000	9790100	13969000	25159000	10325000	14835000	43638000	22526000	21112000	24634000	16659000	7974700	6965	3186	6578	43351;43352;43353;43354;43355;43356	58926;58927;58928;58929;58930;58931	58926			6	
DDQVTVIGAGVTLHEALAAAELLK	1	Unmodified	2433.3115	0.31150432	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		102.24	102.16	3	5.713E-11	90745	160511_QHF_FH_JSI10i_2	92.275	84.123			0.73895	0.82029	23.612	2	0	Median	NaN	NaN	NaN	0	0	Median	0.56959	0.69415	NaN	1	0	Median	0.95866	0.96934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	300340000	167540000	132800000	0	0	0	126480000	79971000	46505000	173860000	87564000	86296000	0	0	0	6966	1322	6579	43357;43358	58932;58933	58933			2	
DDREAQSICER	0	Unmodified	1377.5943	0.59429089	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1			By MS/MS		1	0	1											1		12.627	12.497	2	0.012118	10090	160511_QHF_FH_JSI11i_1	68.657	38.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6967	2046;2296	6580	43359	58934	58934			1	
DDRGPPQRPK	1	Unmodified	1164.6	0.59996862	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			6.1785	5.7003	3	0.03654	3701	160511_QHF_FH_JSI10i_3	43.308	24.176			1.2345	1.0307	27.229	3	3	Median	1.2613	1.0412	1.4255	2	2	Median	0.57728	0.64989	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	855420000	483260000	372160000	445610000	183490000	262130000	409800000	299770000	110030000	0	0	0	0	0	0	6968	1237	6581	43360;43361;43362	58935;58936;58937	58935			3	
DDRVEERDPPR	0	Unmodified	1382.6539	0.65385468	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	9.7212	9.1648	3	0.0063824	7006	160511_QHF_FH_JSI9i_2	43.68	38.958			1.0597	0.9609	11.563	3	0	Median	1.108	0.96076	NaN	1	0	Median	0.76408	0.9609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0597	1.1739	NaN	1	0	Median	203620000	105990000	97627000	78870000	29958000	48913000	96542000	58418000	38125000	0	0	0	28203000	17613000	10590000	6969	2502	6582	43363;43364;43365	58938	58938			1	
DDSDSTLKK	2	Acetyl (K)	1049.4877	0.48768378	3888	Q92797	SYMPK	Symplekin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	11.5	0.5				2	2							2	2	19.474	12.278	2	0.0028075	6369	160513_QHF_FH_JSI11Kac_2	99.802	75.647			1.0398	1.0218	17.84	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2388	1.1592	NaN	1	0	Median	0.87273	0.90068	NaN	1	0	Median	21890000	10644000	11246000	0	0	0	0	0	0	6439200	1894400	4544800	15451000	8749700	6700900	6970	3888	6583	43366;43367;43368;43369	58939;58940;58941	58939	2985		3	
DDSFDSLDSFGSR	0	Unmodified	1446.5899	0.58991702	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.891	65.26	2	0.031661	59447	160511_QHF_FH_JSI12i_1	56.205	45.054			1.0665	1.0551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0665	1.0551	NaN	1	0	Median	15072000	6186800	8884800	0	0	0	0	0	0	0	0	0	15072000	6186800	8884800	6971	5463	6584	43370	58942	58942			0	
DDSGATTMNIGSDK	1	Unmodified	1410.5933	0.59328784	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	29.697	28.966	2	8.7106E-08	25750	160511_QHF_FH_JSI10i_1	184.44	168.56			0.8287	0.85046	46.883	5	5	Median	1.1894	0.95887	49.858	2	2	Median	0.71067	0.85046	NaN	1	1	Median	2.1576	2.1001	NaN	1	1	Median	0.74912	0.77896	NaN	1	1	Median	235850000	112370000	123480000	76368000	37770000	38599000	54527000	31200000	23327000	58697000	21818000	36880000	46255000	21578000	24677000	6972	4176	6585	43371;43372;43373;43374;43375	58943;58944;58945;58946;58947	58945			5	
DDSIEGIYDTLK	1	Unmodified	1367.6456	0.64564098	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.702	80.231	2	6.388E-32	71431	160511_QHF_FH_JSI9i_1	195.27	183.22			1.0024	0.98922	13.252	4	0	Median	1.1482	0.93138	NaN	1	0	Median	1.0257	1.2384	NaN	1	0	Median	0.97094	0.93945	NaN	1	0	Median	0.97976	1.0416	NaN	1	0	Median	2597300000	1257800000	1339400000	422550000	185180000	237370000	620360000	360860000	259500000	524230000	207780000	316460000	1030200000	504030000	526120000	6973	1242	6586	43376;43377;43378;43379	58948;58949;58950;58951;58952;58953;58954;58955;58956;58957;58958;58959	58958			12	
DDSLPSNPIDFSYR	0	Unmodified	1624.7369	0.73691561	4249	Q96SW2	CRBN	Protein cereblon	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	75.96	75.24	2	0.0012492	68565	160511_QHF_FH_JSI12i_1	61.353	54.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6974	4249	6587	43380;43381	58960;58961	58960			2	
DDSNHTIGVEFGSK	1	Unmodified	1504.6794	0.67940073	1173	P20338	RAB4A	Ras-related protein Rab-4A	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	40.23	39.618	2;3	0.0028138	35969	160511_QHF_FH_JSI12i_1	46.156	34.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6975	1173	6588	43382;43383	58962;58963	58963			2	
DDSPDLPK	1	Unmodified	885.40798	0.40797689	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	25.34	21.752	2	0.0018444	18799	160511_QHF_FH_JSI9i_1	84.568	47.474		+	0.76321	0.73795	38.262	7	0	Median	1.2884	1.0381	NaN	1	0	Median	1.0768	1.2751	22.473	2	0	Median	0.71234	0.68744	10.028	2	0	Median	0.52529	0.55548	8.2844	2	0	Median	1077700000	557810000	519940000	179070000	74367000	104710000	222780000	97439000	125340000	311170000	152510000	158660000	364720000	233490000	131230000	6976	50	6589	43384;43385;43386;43387;43388;43389;43390	58964;58965;58966;58967;58968;58969;58970;58971	58969			8	
DDSPLYIFDSSYGEHPK	1	Unmodified	1968.8741	0.87413737	3082	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	75.769	74.88	4	0.062188	65654	160511_QHF_FH_JSI11i_2	9.6577	0.94895			0.87845	0.87726	20.371	3	0	Median	1.2323	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87845	0.87726	NaN	1	0	Median	0.66207	0.71284	NaN	1	0	Median	112970000	63587000	49385000	19281000	6328900	12952000	0	0	0	53653000	31989000	21664000	40037000	25269000	14768000	6977	3082	6590	43391;43392;43393	58972	58972			1	
DDSTDFKK	2	Unmodified	954.42944	0.42944062	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	9.5629	9.2597	2	0.0051998	7059	160511_QHF_FH_JSI10i_1	84.568	33.864			0.64592	0.7181	53.861	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90279	1.051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46214	0.49066	NaN	1	1	Median	232740000	143570000	89172000	0	0	0	139230000	78703000	60526000	0	0	0	93511000	64865000	28646000	6978	227	6591	43394;43395	58973;58974	58974			2	
DDSVVEK	1	Unmodified	790.37086	0.37086311	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		12.499	5.2635	2	0.0037881	4195	160513_QHF_FH_JSI11Kac_2	99.375	29.992			1.4057	1.3329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4057	1.3329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11818000	5250700	6567300	0	0	0	0	0	0	11818000	5250700	6567300	0	0	0	6979	655	6592	43396	58975;58976	58975			2	
DDTDDEIAK	1	Unmodified	1020.4247	0.42474917	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	13.799	13.385	2	3.5446E-05	11113	160511_QHF_FH_JSI12i_1	118.5	93.572			0.81854	0.83431	35.78	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81854	0.83431	35.78	2	2	Median	353030000	199460000	153580000	0	0	0	0	0	0	0	0	0	353030000	199460000	153580000	6980	1299	6593	43397;43398	58977;58978	58978			2	
DDTIYEDEDVK	1	Unmodified	1340.562	0.56197093	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	3	2	2	38.766	34.599	2	7.6618E-18	31242	160511_QHF_FH_JSI10i_1	155.42	121.17			1.049	1.0633	30.502	7	0	Median	1.049	0.87372	NaN	1	0	Median	0.73551	0.84657	47.245	2	0	Median	1.0972	1.0571	0.82327	2	0	Median	1.2722	1.3623	27.142	2	0	Median	683900000	375480000	308420000	149690000	74119000	75569000	170480000	102450000	68028000	200820000	109640000	91179000	162910000	89273000	73641000	6981	1066	6594	43399;43400;43401;43402;43403;43404;43405;43406	58979;58980;58981;58982;58983;58984;58985;58986;58987;58988;58989;58990	58983			12	
DDVAPESGDTTVK	1	Unmodified	1332.6045	0.60450445	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.96	4			1	1					1	1	2	2	23.51	20.661	2	3.1901E-05	17784	160511_QHF_FH_JSI9i_1	143.24	131.19			0.78127	0.84643	20.34	6	0	Median	0.71559	0.58755	NaN	1	0	Median	0.77264	0.94608	NaN	1	0	Median	0.95078	0.91501	10.07	2	0	Median	0.69916	0.7471	16.704	2	0	Median	1338800000	699170000	639680000	314630000	151140000	163500000	279160000	155030000	124130000	336800000	170700000	166100000	408250000	222300000	185950000	6982	596	6595	43407;43408;43409;43410;43411;43412	58991;58992;58993;58994;58995;58996;58997;58998;58999;59000	58999			10	
DDVAQTDLLQIDPNFGSK	1	Unmodified	1974.9535	0.95345032	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.943	10		5							4	5	4	2	87.865	87.294	2;3	1.296E-159	77828	160511_QHF_FH_JSI9i_1	298.78	267.43			0.97551	1.0354	24.01	13	7	Median	1.2174	1.001	7.8556	3	1	Plateau	0.90326	1.0604	37.497	5	4	Median	1.0618	1.0354	12.891	3	2	Median	0.96168	1.0084	6.1964	2	0	Median	6753900000	3518600000	3235300000	1206000000	524580000	681420000	1776000000	1025200000	750790000	2458500000	1305000000	1153500000	1313400000	663850000	649600000	6983	895	6596	43413;43414;43415;43416;43417;43418;43419;43420;43421;43422;43423;43424;43425;43426;43427	59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034	59034			34	
DDVASEVYK	1	Unmodified	1024.4713	0.47130543	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	32.185	29.967	2	3.1741E-05	27074	160511_QHF_FH_JSI12i_1	101.64	87.486			1.3609	1.219	28.919	5	2	Median	1.3609	1.1284	NaN	1	0	Median	0.67629	0.80012	NaN	1	1	Median	1.7903	1.705	NaN	1	0	Median	1.2383	1.3455	13.954	2	1	Median	420430000	167950000	252480000	79783000	26961000	52822000	110700000	57690000	53007000	106350000	33948000	72401000	123610000	49354000	74252000	6984	4234	6597	43428;43429;43430;43431;43432;43433	59035;59036;59037;59038;59039;59040;59041	59037			7	
DDVFGYPQQFEDKPALSK	2	Unmodified	2082.9898	0.98983583	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	By MS/MS		By MS/MS		1	0	2									1		1		70.466	69.802	3	5.0789E-07	63464	160511_QHF_FH_JSI11i_1	109.42	96.707			0.77393	0.68178	7.7502	2	1	Median	0.89965	0.72018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66578	0.64542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115170000	61024000	54143000	41143000	20418000	20726000	0	0	0	74024000	40606000	33417000	0	0	0	6985	3921	6598	43434;43435	59042;59043	59042			2	
DDVFLSVPCILGQNGISDLVK	1	Unmodified	2288.1722	0.17223365	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	102.38	102.29	2;3	3.7264E-37	92889	160511_QHF_FH_JSI12i_1	194.51	191.27			0.97698	1.0867	28.033	7	0	Median	1.0024	0.85072	NaN	1	0	Median	0.93625	1.1247	4.8562	2	0	Median	0.73983	0.72334	17.174	2	0	Median	1.2739	1.3429	4.809	2	0	Median	1717600000	903350000	814270000	29332000	14325000	15007000	455150000	243510000	211640000	615760000	349320000	266430000	617380000	296200000	321180000	6986	761	6599	43436;43437;43438;43439;43440;43441;43442	59044;59045;59046;59047;59048;59049;59050;59051;59052;59053;59054	59047			11	
DDVIVTASNFSSER	0	Unmodified	1538.7213	0.72126554	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	4	1	2	59.564	56.678	2	3.4346E-06	51473	160511_QHF_FH_JSI12i_1	132.56	117.59			0.91049	0.90161	34.395	8	8	Median	1.1892	0.97238	17.785	2	2	Median	0.90973	1.0719	46.273	4	4	Median	0.79814	0.75779	NaN	1	1	Median	0.73148	0.75894	NaN	1	1	Median	372870000	175460000	197410000	127090000	44654000	82440000	143210000	75632000	67573000	49070000	27586000	21484000	53499000	27583000	25915000	6987	103	6600	43443;43444;43445;43446;43447;43448;43449;43450;43451	59055;59056;59057;59058;59059;59060;59061;59062;59063	59056			9	
DDVLTVIR	0	Unmodified	929.5182	0.51819605	3286	Q7Z6J0	SH3RF1	E3 ubiquitin-protein ligase SH3RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		56.015	55.601	2	0.012376	50195	160511_QHF_FH_JSI10i_1	52.716	26.114			0.41383	0.39576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41383	0.39576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9158700	6844900	2313800	0	0	0	0	0	0	9158700	6844900	2313800	0	0	0	6988	3286	6601	43452;43453;43454	59064;59065;59066	59065			3	
DDVQGYAAK	1	Unmodified	965.44543	0.44542503	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0				By MS/MS	12	0					1								1	21.084	14.113	2	0.043353	7530	160513_QHF_FH_JSI12Kac_2	43.246	18.324			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6989	726;635	6602	43455	59067	59067			1	
DDVSISVEEGK	1	Unmodified	1176.551	0.55101232	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.86	4.97	2				5						3	1	3	41.491	34.979	2	2.9699E-13	31960	160511_QHF_FH_JSI12i_1	150.35	113.79			0.98181	1.1568	47.062	7	5	Median	NaN	NaN	NaN	0	0	Median	0.94925	1.1099	35.594	3	2	Median	1.8598	1.7333	NaN	1	1	Median	1.3449	1.437	62.101	3	2	Median	383020000	173460000	209560000	0	0	0	197910000	89010000	108900000	1556500	536920	1019600	183550000	83908000	99643000	6990	878	6603	43456;43457;43458;43459;43460;43461;43462	59068;59069;59070;59071;59072;59073;59074	59069			7	
DDVSIYYVSR	0	Unmodified	1215.5772	0.57716749	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	4.64	1					3	2			1	2	1	2	59.253	50.783	2	2.7465E-08	26340	160513_QHF_FH_JSI10Kac_3	152.28	142.69			1.1449	1.1042	13.617	6	1	Median	1.2654	1.0414	NaN	1	1	Median	0.87429	1.0355	3.5851	2	0	Median	1.2795	1.2795	NaN	1	0	Median	1.1806	1.2824	15.647	2	0	Median	147240000	75075000	72169000	100170000	52832000	47337000	22715000	13122000	9592600	6376400	2455500	3921000	17984000	6665100	11319000	6991	228	6604	43463;43464;43465;43466;43467;43468	59075;59076;59077;59078;59079;59080;59081;59082;59083;59084;59085	59085			11	
DDVVLPALHFHQGDSK	1	Unmodified	1776.8795	0.87949752	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			61.926	61.067	3	0.00016913	54048	160511_QHF_FH_JSI10i_2	50.608	32.691			0.72317	0.89221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72317	0.89221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27486000	15237000	12249000	0	0	0	27486000	15237000	12249000	0	0	0	0	0	0	6992	3699	6605	43469	59086	59086			1	
DDVVTFIDAK	1	Unmodified	1121.5605	0.56045479	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	68.903	64.885	2	0.00093589	58712	160511_QHF_FH_JSI12i_1	81.338	62.898			1.0352	0.81506	23.661	7	4	Linear	1.1472	0.94679	NaN	1	0	Median	0.70573	0.82537	47.515	2	1	Median	0.7534	0.75572	26.999	2	1	Median	0.74922	0.79227	4.0112	2	2	Median	190520000	94362000	96163000	43921000	17981000	25939000	45448000	28907000	16541000	50478000	27947000	22531000	50679000	19528000	31151000	6993	4132	6606	43470;43471;43472;43473;43474;43475;43476	59087;59088;59089;59090;59091;59092	59088			6	
DDVYEAFMK	1	Unmodified	1116.4798	0.47976163	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.835	64.22	2	5.6693E-06	58362	160511_QHF_FH_JSI11i_1	114.89	106.95			0.96907	0.91089	11.865	4	0	Linear	1.4465	1.2045	NaN	1	0	Median	0.95502	1.1173	NaN	1	0	Median	0.98332	0.95601	NaN	1	0	Median	0.91138	0.94662	NaN	1	0	Median	566610000	294310000	272300000	116970000	51343000	65632000	135880000	76799000	59077000	145460000	77149000	68315000	168300000	89022000	79277000	6994	5543	6607	43477;43478;43479;43480	59093;59094;59095;59096;59097;59098;59099	59094			7	
DDWKPSPLIK	2	Unmodified	1197.6394	0.63937381	3824	Q8WZA1	POMGNT1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		32.174	31.935	3	0.03444	28561	160511_QHF_FH_JSI11i_1	24.343	0.9675			1.013	0.97044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.013	0.97044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1078100000	535940000	542150000	0	0	0	0	0	0	1078100000	535940000	542150000	0	0	0	6995	3824	6608	43481	59100	59100			1	
DDWWNLLLK	1	Unmodified	1201.6132	0.61315906	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	102.27	102.2	2	0.00027405	88071	160511_QHF_FH_JSI12i_2	87.616	69.797			0.68377	0.72462	5.7012	2	0	Median	0.85872	0.75442	NaN	1	0	Median	0.54446	0.69598	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25028000	14921000	10107000	12739000	7191000	5548400	12289000	7730300	4558800	0	0	0	0	0	0	6996	5675	6609	43482;43483;43484	59101;59102	59101			1	
DDYELIDVLVNNAK	1	Unmodified	1619.8043	0.80426689	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		101.67	101.61	2	0.00052165	92357	160511_QHF_FH_JSI10i_1	92.866	84.353			0.87101	0.93	5.6576	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82272	0.96796	NaN	1	1	Median	0.92213	0.89353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63899000	27372000	36527000	0	0	0	37791000	17571000	20221000	26108000	9801500	16307000	0	0	0	6997	3117	6610	43485;43486	59103;59104	59104			1	
DDYFAKK	2	Acetyl (K)	927.4338	0.43379771	840	P05455	SSB	Lupus La protein	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	41.87	33.137	2	0.0074736	18529	160513_QHF_FH_JSI12Kac_3	93.262	46.195			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6998	840	6611	43487	59105	59105	489		1	
DDYGFSGSQK	1	Unmodified	1102.4567	0.456718	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.417	22.874	2	0.00014929	19899	160511_QHF_FH_JSI11i_1	83.456	54.096			0.63382	0.56994	32.991	4	2	Median	0.60345	0.50991	NaN	1	1	Median	0.75911	0.90415	NaN	1	0	Median	0.66571	0.63703	NaN	1	0	Median	0.40692	0.41897	NaN	1	1	Median	135030000	78935000	56091000	30180000	18079000	12101000	37265000	21798000	15467000	32991000	16854000	16137000	34590000	22204000	12386000	6999	4714	6612	43488;43489;43490;43491	59106;59107;59108;59109;59110	59107			5	
DDYPSSPPK	1	Unmodified	1004.4451	0.44509068	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	5.24	4			2	4					1	3	4	2	21.091	16.866	2	2.1666E-06	14689	160511_QHF_FH_JSI10i_1	127.56	107.78			1.0089	0.99428	27.496	9	1	Median	1.1807	0.97188	NaN	1	0	Median	0.92687	1.1013	13.213	2	0	Median	1.0525	1.0177	41.169	4	1	Median	0.90381	0.95946	5.0411	2	0	Median	3206400000	1511900000	1694400000	797640000	341010000	456630000	845040000	433410000	411620000	703450000	293310000	410140000	860230000	444200000	416030000	7000	2063	6613	43492;43493;43494;43495;43496;43497;43498;43499;43500;43501	59111;59112;59113;59114;59115;59116;59117;59118;59119;59120;59121;59122;59123;59124;59125;59126	59119			16	
DDYSTAQR	0	Unmodified	954.40429	0.4042885	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3.75	4.76	3				1						1	1	2	7.5277	5.5545	2	0.004596	4956	160511_QHF_FH_JSI12i_1	68.214	53.801			0.92266	0.98287	12.652	4	1	Median	NaN	NaN	NaN	0	0	Median	0.98956	1.1437	NaN	1	0	Median	1.0375	1.0013	NaN	1	0	Median	0.84273	0.90068	9.7196	2	1	Median	233430000	121940000	111490000	0	0	0	86263000	45838000	40425000	61441000	26107000	35334000	85723000	49994000	35730000	7001	2909	6614	43502;43503;43504;43505	59127;59128;59129;59130	59127			4	
DDYTIPDEYR	0	Unmodified	1285.5463	0.54626129	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.937	47.256	2	4.9264E-05	42711	160511_QHF_FH_JSI10i_1	93.111	80.885			0.85996	0.86378	5.484	4	2	Median	1.0484	0.8612	NaN	1	1	Median	0.66193	0.78412	NaN	1	0	Median	0.87531	0.86636	NaN	1	0	Median	0.84489	0.8887	NaN	1	1	Median	422040000	232600000	189450000	92940000	50763000	42177000	95284000	53943000	41341000	129470000	67440000	62025000	104360000	60452000	43903000	7002	1556	6615	43506;43507;43508;43509	59131;59132;59133;59134;59135	59134			5	
DEAAVHQDGK	1	Unmodified	1068.4836	0.48360145	5184	Q9P0K8	FOXJ2	Forkhead box protein J2	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		21.289	13.797	2	0.0027657	9261	160513_QHF_FH_JSI11Kac_3	72.485	53.754			1.3121	1.2801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3121	1.2801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3684100	1671600	2012500	0	0	0	0	0	0	3684100	1671600	2012500	0	0	0	7003	5184	6616	43510	59136	59136			1	
DEAAYGELR	0	Unmodified	1022.4669	0.46688876	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	3	2	27.975	27.252	2	0.00021722	24062	160511_QHF_FH_JSI10i_1	89.698	70.062			0.66518	1.5422	45.037	5	5	Linear	1.2191	1.0002	83.718	2	2	Median	0.66271	0.78581	NaN	1	1	Median	0.91005	0.86048	NaN	1	1	Median	0.63124	0.67758	NaN	1	1	Median	242120000	111520000	130590000	94008000	34849000	59159000	45464000	25797000	19667000	62851000	29230000	33620000	39793000	21648000	18145000	7004	5391	6617	43511;43512;43513;43514;43515;43516;43517;43518;43519	59137;59138;59139;59140;59141;59142;59143;59144;59145	59142			9	
DEALAILAK	1	Unmodified	942.5386	0.53859714	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			62.214	61.128	2	0.0024183	55142	160511_QHF_FH_JSI10i_1	65.246	47.861			1.2257	0.99328	NaN	1	1	Median	1.2257	0.99328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13504000	6872800	6631100	13504000	6872800	6631100	0	0	0	0	0	0	0	0	0	7005	557	6618	43520;43521	59146;59147	59146			2	
DEALEDEDNKK	2	Unmodified	1304.5732	0.57320432	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		10.811	10.427	2	5.6977E-11	7924	160511_QHF_FH_JSI9i_1	193.82	148.74			2.6012	2.301	46.119	2	2	Median	1.9868	1.6607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.4057	3.1882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	203690000	28925000	174760000	86050000	21885000	64165000	47116000	0	47116000	70523000	7039700	63483000	0	0	0	7006	1169	6619	43522;43523;43524	59148;59149;59150	59150			3	
DEALETEK	1	Unmodified	933.42911	0.42910627	1524	P42025	ACTR1B	Beta-centractin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.33	5.19	1				2					1		1	1	15.743	10.739	2	0.0072426	9918	160511_QHF_FH_JSI9i_1	69.598	35.595			6.194	5.0599	79.109	3	3	Median	6.194	5.0599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14.702	14.142	NaN	1	1	Median	2.6438	2.9847	NaN	1	1	Median	38071000	10016000	28055000	35617000	9746600	25871000	0	0	0	1345700	113830	1231900	1108400	155790	952590	7007	1524	6620	43525;43526;43527	59151;59152;59153	59152			3	
DEAQNEGPATESEAPLK	1	Unmodified	1784.8065	0.80645173	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.618	32.014	2	6.0549E-08	28538	160511_QHF_FH_JSI10i_1	170.18	145.89			0.89589	0.90431	11.94	4	0	Median	0.9096	0.74407	NaN	1	0	Median	0.82768	0.97541	NaN	1	0	Median	0.89819	0.87249	NaN	1	0	Median	0.89359	0.93729	NaN	1	0	Median	198930000	104860000	94065000	43153000	21654000	21499000	58531000	34017000	24514000	59282000	29350000	29931000	37960000	19840000	18120000	7008	3499	6621	43528;43529;43530;43531	59154;59155;59156;59157;59158;59159;59160;59161;59162;59163	59159			10	
DEAVGALHLIQAAK	1	Unmodified	1434.7831	0.78307794	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.05		6					4	7		3	7	4	3	71.133	63.991	2;3	5.7508E-10	55987	160511_QHF_FH_JSI11i_2	150.04	129.74			0.964	1.0329	23.602	17	7	Median	0.93282	0.80433	35.262	3	1	Plateau	0.81958	1.0069	30.534	7	5	Median	1.0003	0.99512	10.802	4	1	Median	1.0241	1.1067	2.7183	3	0	Median	357240000	196520000	160720000	48672000	23460000	25212000	120220000	70577000	49640000	117410000	65761000	51648000	70946000	36728000	34218000	7009	5485	6622	43532;43533;43534;43535;43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548	59164;59165;59166;59167;59168;59169;59170;59171;59172;59173;59174;59175;59176;59177;59178;59179;59180;59181;59182;59183	59173			19	
DEDDADYKPK	2	Acetyl (K)	1236.5146	0.51462681	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.484				5	3						2	2	4	30.598	22.297	2	1.5242E-05	11061	160513_QHF_FH_JSI12Kac_2	105.4	86.302			1.6353	1.5677	118.86	5	1	Median	NaN	NaN	NaN	0	0	Median	15.815	17.361	NaN	1	1	Median	1.2177	1.197	38.151	2	0	Median	1.7719	1.8537	69.98	2	0	Median	13343000	4651200	8691900	0	0	0	2346400	49908	2296500	4161300	1934400	2226800	6835500	2666800	4168600	7010	998	6623	43549;43550;43551;43552;43553;43554;43555;43556	59184;59185;59186;59187;59188;59189;59190;59191;59192;59193	59192	791		10	
DEDDADYKPK	2	Unmodified	1194.5041	0.50406212	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				11.394	10.605	2	0.0080777	8092	160511_QHF_FH_JSI9i_1	74.165	50.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7011	998	6623	43557	59194	59194			1	
DEDLFREWLK	1	Unmodified	1349.6616	0.66156582	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	88.266	87.526	3	0.01231	75534	160511_QHF_FH_JSI12i_2	42.743	30.167			0.62138	0.7444	20.058	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50319	0.64597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76732	0.85784	NaN	1	0	Median	24627000	14913000	9714500	0	0	0	13016000	8392500	4623700	0	0	0	11611000	6520400	5090800	7012	541	6624	43558;43559	59195;59196;59197	59195			3	
DEDPYVRK	1	Unmodified	1020.4876	0.4876242	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			1	3	1	4	12.494	11.188	2;3	0.00014684	9304	160511_QHF_FH_JSI12i_1	94.302	80.096			1.0339	0.97641	44.174	9	4	Median	1.1873	0.96676	NaN	1	0	Median	0.80837	0.97345	81.416	3	2	Median	0.99686	0.97641	NaN	1	0	Median	1.1349	1.2206	20.73	4	2	Median	1121000000	588900000	532070000	134570000	52050000	82519000	372860000	228240000	144620000	254790000	127520000	127270000	358740000	181090000	177650000	7013	2046;2296	6625	43560;43561;43562;43563;43564;43565;43566;43567;43568	59198;59199;59200;59201;59202;59203;59204;59205	59201			8	
DEDQLEAFLK	1	Unmodified	1206.5768	0.57683314	4313	Q99757	TXN2	Thioredoxin, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	77.134	76.742	2	5.6086E-06	69851	160511_QHF_FH_JSI11i_1	123.86	114.95			0.60665	0.61803	50.792	4	3	Median	NaN	NaN	NaN	0	0	Median	0.31658	0.36633	NaN	1	1	Median	0.78378	0.76255	NaN	1	0	Median	0.73758	0.76808	60.457	2	2	Median	114400000	70298000	44107000	0	0	0	38555000	26481000	12074000	34292000	18425000	15867000	41558000	25393000	16165000	7014	4313	6626	43569;43570;43571;43572	59206;59207;59208;59209;59210	59207			5	
DEDSAEALLK	1	Unmodified	1089.519	0.51898391	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		46.417	45.603	2	0.0078466	41050	160511_QHF_FH_JSI10i_1	52.278	42.367			0.86035	0.76003	54.067	2	2	Median	0.63614	0.51856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1636	1.114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77770000	33281000	44488000	48109000	22043000	26066000	0	0	0	29660000	11238000	18422000	0	0	0	7015	2470	6627	43573;43574;43575;43576	59211;59212;59213;59214	59212			4	
DEDVLQK	1	Unmodified	845.41306	0.41306227	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.69	6				3	2				2	2	4	3	22.491	19.216	2	0.0015812	8784	160513_QHF_FH_JSI11Kac_2	97.068	30.033			0.84066	0.92748	187.31	10	10	Median	1.3938	1.1322	281.78	2	2	Median	1.5155	1.773	240.93	2	2	Median	0.2318	0.22814	187.15	3	3	Plateau	2.435	0.13988	170.92	3	3	Plateau	1317200000	602250000	714980000	444820000	178000000	266820000	424450000	190720000	233730000	244790000	168420000	76369000	203160000	65108000	138060000	7016	5141	6628	43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587	59215;59216;59217;59218;59219;59220;59221;59222;59223;59224;59225	59217			11	
DEDYKQR	1	Acetyl (K)	994.43559	0.43558863	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.5	0.5					2	2					2	2		14.077	6.7574	2	9.4431E-09	6085	160513_QHF_FH_JSI11Kac_3	146.94	128.21			0.5489	0.59596	84.403	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0428	1.2259	2.3933	2	0	Median	0.29052	0.28445	4.9885	2	0	Median	NaN	NaN	NaN	0	0	Median	58077000	40669000	17407000	0	0	0	11020000	4592200	6427600	47057000	36077000	10980000	0	0	0	7017	2161	6629	43588;43589;43590;43591	59226;59227;59228;59229;59230;59231	59229	2270		6	
DEDYLGK	1	Unmodified	838.37086	0.37086311	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.289	21.106	2	0.027308	17887	160511_QHF_FH_JSI9i_1	56.122	11.43			0.51916	0.423	NaN	1	1	Median	0.51916	0.423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35449000	22126000	13323000	35449000	22126000	13323000	0	0	0	0	0	0	0	0	0	7018	5755	6630	43592	59232	59232			1	
DEEFPEQK	1	Unmodified	1020.44	0.4400053	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.57	7				2					1	2	3	3	22.533	20.397	2	0.00066914	17831	160511_QHF_FH_JSI12i_1	95.909	82.238			0.98857	1.0337	28.5	8	7	Median	1.1939	0.99335	NaN	1	1	Median	0.98857	1.1508	6.797	2	2	Median	0.95574	0.94081	43.827	3	3	Plateau	0.80661	0.8481	5.8603	2	1	Median	741570000	340410000	401160000	163380000	64729000	98650000	214570000	92582000	121990000	238550000	122440000	116100000	125070000	60658000	64416000	7019	1139	6631	43593;43594;43595;43596;43597;43598;43599;43600;43601	59233;59234;59235;59236;59237;59238;59239;59240;59241	59237			9	
DEEMIGPIIDK	1	Unmodified	1258.6115	0.61150408	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.698	65.088	2	2.4752E-06	59143	160511_QHF_FH_JSI12i_1	121.83	94.088			1.953	1.9136	25.542	4	4	Median	2.0699	1.7103	NaN	1	1	Median	1.8428	2.1411	NaN	1	1	Median	1.697	1.666	NaN	1	1	Median	2.8341	2.8902	NaN	1	1	Median	498560000	232350000	266210000	158360000	83517000	74846000	115270000	45178000	70092000	138340000	71992000	66350000	86589000	31662000	54926000	7020	4992	6632	43602;43603;43604;43605	59242;59243;59244;59245;59246	59243			5	
DEENDALLGGPAQLTDEEK	1	Unmodified	2042.928	0.92802343	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	67.224	66.694	2	3.598E-07	60617	160511_QHF_FH_JSI11i_1	93.478	81.313			0.74843	0.84126	27.263	5	3	Median	0.58914	0.47379	NaN	1	1	Median	0.61614	0.70106	27.523	2	2	Median	0.8769	0.84126	NaN	1	0	Median	0.84189	0.84502	NaN	1	0	Median	126010000	68064000	57946000	19835000	11181000	8654000	47394000	27078000	20316000	31208000	16662000	14546000	27573000	13144000	14430000	7021	940	6633	43606;43607;43608;43609;43610;43611	59247;59248;59249;59250;59251;59252	59248			6	
DEENHEESESLQEDMLGNR	0	Unmodified	2259.9186	0.91859773	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.347	45.853	3	3.1185E-06	41239	160511_QHF_FH_JSI10i_1	89.344	86.814			1.2053	1.4034	17.421	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.4034	NaN	1	0	Median	1.6887	1.6089	NaN	1	1	Median	1.1119	1.1384	NaN	1	0	Median	107020000	47886000	59137000	0	0	0	50770000	22666000	28104000	22872000	5564900	17307000	33381000	19655000	13726000	7022	3438	6634	43612;43613;43614	59253;59254;59255;59256;59257;59258	59257			6	
DEENNPLETEYGLSVYK	1	Unmodified	1998.9058	0.90583143	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	76.02	75.536	2;3	6.9049E-41	68856	160511_QHF_FH_JSI12i_1	209.21	186.74			0.97027	1.0077	18.379	8	0	Median	1.4943	1.2529	27.366	2	0	Median	0.73915	0.86271	2.3599	2	0	Median	1.0505	0.99614	13.179	2	0	Median	0.97027	1.0135	4.2463	2	0	Median	852740000	459100000	393640000	141050000	59971000	81083000	220600000	129270000	91325000	280610000	150590000	130020000	210480000	119270000	91210000	7023	1254	6635	43615;43616;43617;43618;43619;43620;43621;43622;43623	59259;59260;59261;59262;59263;59264;59265;59266;59267;59268;59269;59270;59271;59272;59273;59274;59275;59276;59277;59278	59267			18	
DEERHVGDLGNVTADK	1	Unmodified	1753.8231	0.82310485	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.2	1	8	3				1			1	4	3	5	29.091	27.774	2;3;4	3.4081E-06	24077	160511_QHF_FH_JSI10i_2	122.5	115.27			0.94807	1.0402	18.76	13	2	Median	1.3384	1.1385	NaN	1	0	Median	0.92141	1.097	8.4646	4	1	Median	1.0573	1.0397	26.414	3	1	Plateau	0.94807	0.75919	18.291	5	0	Linear	1410100000	688870000	721180000	202860000	87239000	115620000	364720000	181140000	183590000	269310000	130700000	138610000	573150000	289800000	283350000	7024	769	6636	43624;43625;43626;43627;43628;43629;43630;43631;43632;43633;43634;43635;43636	59279;59280;59281;59282;59283;59284;59285;59286;59287;59288;59289;59290;59291;59292;59293;59294;59295;59296;59297;59298;59299;59300;59301;59302	59295			24	
DEESGGGSNPFQHLEK	1	Unmodified	1729.7544	0.75435658	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	42.37	41.875	2	1.2772E-27	37744	160511_QHF_FH_JSI11i_1	147.18	121.74			0.94639	0.95343	3.4285	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99915	0.97683	NaN	1	1	Median	0.89643	0.9306	NaN	1	0	Median	95310000	51170000	44140000	0	0	0	0	0	0	42163000	24018000	18145000	53147000	27152000	25995000	7025	5708	6637	43637;43638;43639;43640;43641	59303;59304;59305;59306;59307;59308	59304			6	
DEETGLCLLPLK	1	Unmodified	1386.7065	0.7064671	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	85.819	85.257	2	1.2682E-10	77667	160511_QHF_FH_JSI12i_1	142.43	135.15			0.3978	0.42023	50.164	3	1	Plateau	1.1859	0.97021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41496	0.39533	NaN	1	0	Median	0.3978	0.42023	NaN	1	0	Median	99125000	66062000	33063000	15518000	7239800	8278600	0	0	0	38235000	25560000	12675000	45372000	33262000	12109000	7026	1085	6638	43642;43643;43644	59309;59310	59309			2	
DEEVLKK	2	Unmodified	859.4651	0.46509784	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	1	2	12.391	12.127	2;3	0.0049743	10032	160511_QHF_FH_JSI12i_1	58.981	11.914			2.9458	2.8691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9458	2.8691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	518020000	272160000	245860000	0	0	0	0	0	0	471720000	225860000	245860000	46297000	46297000	0	7027	2474;97	6639	43645;43646;43647;43648	59311;59312;59313;59314	59312			4	
DEEVLKK	2	Acetyl (K)	901.47566	0.47566253	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.4					4	1					2	2	1	31.337	22.918	2	0.0019076	13847	160513_QHF_FH_JSI11Kac_3	131.04	36.63			0.060828	0.059348	63.861	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.077224	0.073928	31.065	2	2	Median	0.20014	0.20887	NaN	1	1	Median	27569000	21642000	5926800	0	0	0	8203900	3352400	4851400	15924000	15020000	904130	3441100	3269900	171260	7028	2474;97	6639	43649;43650;43651;43652;43653	59315;59316;59317;59318;59319	59316	62		5	
DEFEGLFK	1	Unmodified	983.46001	0.46001246	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	69.188	68.624	2	6.2302E-06	60879	160511_QHF_FH_JSI9i_1	124.08	96.554			0.90124	0.99672	16.313	4	1	Median	0.90104	0.7294	NaN	1	1	Median	0.88203	1.0258	NaN	1	0	Median	1.0403	1.0252	NaN	1	0	Median	0.90144	0.96904	NaN	1	0	Median	1397500000	670950000	726510000	267540000	119010000	148530000	334940000	173390000	161550000	401480000	192750000	208720000	393500000	185800000	207700000	7029	1208	6640	43654;43655;43656;43657;43658	59320;59321;59322;59323;59324;59325;59326;59327	59327			8	
DEGASLAENK	1	Unmodified	1032.4724	0.47236807	3121	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.39	3				2					1	1	1	2	16.148	13.459	2	0.00024811	11266	160511_QHF_FH_JSI9i_1	91.584	67.429			0.6849	0.77561	44.515	3	3	Median	0.53606	0.43846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1019	1.0541	NaN	1	1	Median	0.6849	0.77561	NaN	1	1	Median	110090000	61237000	48851000	61624000	40708000	20916000	0	0	0	47445000	19844000	27601000	1018900	684830	334060	7030	3121	6641	43659;43660;43661;43662;43663	59328;59329;59330;59331;59332	59330			5	
DEGGKAFFK	2	Acetyl (K)	1039.4975	0.4974606	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	1	2	56.511	46.627	2	0.0001974	24495	160513_QHF_FH_JSI10Kac_3	95.531	80.755			0.22463	0.25923	85.588	5	3	Median	NaN	NaN	NaN	0	0	Median	0.10862	0.12676	101.18	2	2	Median	0.36905	0.36397	NaN	1	0	Median	0.36151	0.38818	67.654	2	1	Median	23555000	18665000	4890900	0	0	0	4910300	4666500	243770	12618000	9541100	3077400	6026600	4456900	1569700	7031	1014;826	6642	43664;43665;43666;43667;43668	59333;59334;59335;59336;59337;59338;59339	59339	473;474		7	
DEGPVAEQVK	1	Unmodified	1070.5244	0.52440364	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	22.245	21.39	2	0.0026371	18720	160511_QHF_FH_JSI12i_1	72.643	44.547			1.1481	1.0783	106.95	2	2	Median	0.61204	0.50621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1535	2.297	NaN	1	1	Median	180550000	89525000	91024000	88995000	62206000	26789000	0	0	0	0	0	0	91554000	27320000	64234000	7032	3801	6643	43669;43670	59340;59341	59340			2	
DEHNEERDVMLAK	1	Unmodified	1584.7202	0.72021968	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	2	3	23.671	22.947	2;3	7.548E-05	18773	160511_QHF_FH_JSI12i_3	82.069	77.678			1.1236	1.2088	27.366	7	0	Median	2.0739	1.8413	NaN	1	0	Median	1.3042	1.5888	NaN	1	0	Median	1.2609	1.294	17.665	2	0	Median	1.0139	1.1168	21.707	3	0	Median	566340000	238530000	327820000	46325000	15680000	30645000	90126000	36481000	53645000	217030000	79782000	137250000	212860000	106580000	106270000	7033	1410	6644	43671;43672;43673;43674;43675;43676;43677	59342;59343;59344;59345;59346;59347;59348;59349;59350;59351	59351			10	
DEIDSAVK	1	Unmodified	875.42363	0.42362696	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0		By MS/MS			12	0					1						1			24.526	17.205	2	0.046917	8494	160513_QHF_FH_JSI10Kac_2	53.166	25.642			0.99957	1.1333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99957	1.1333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2017300	984850	1032400	0	0	0	2017300	984850	1032400	0	0	0	0	0	0	7034	1226	6645	43678	59352	59352			1	
DEIDVKFK	2	Acetyl (K)	1034.5284	0.52842638	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						3					2	1		62.14	52.635	2	0.005903	27609	160513_QHF_FH_JSI11Kac_3	84.498	40.103			4.9913	5.9325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.9913	5.9325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4618000	2845500	1772600	0	0	0	3035100	1262500	1772600	1583000	1583000	0	0	0	0	7035	5640	6646	43679;43680;43681	59353;59354;59355	59353	3511		3	
DEIFQVHWSPHNETILASSGTDR	0	Unmodified	2638.2412	0.24119292	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	75.872	75.587	3;4	4.5661E-26	65555	160511_QHF_FH_JSI12i_3	115.55	103.07			1.236	1.2774	10.625	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.236	1.2774	10.625	2	1	Median	113000000	45662000	67336000	0	0	0	0	0	0	0	0	0	113000000	45662000	67336000	7036	2741	6647	43682;43683;43684;43685	59356;59357;59358;59359;59360;59361	59361			6	
DEIFQVQWSPHNETILASSGTDR	0	Unmodified	2629.2409	0.24085857	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	84.584	83.828	3	2.9349E-09	72360	160511_QHF_FH_JSI12i_2	85.932	76.911			1.2649	1.2826	12.475	3	1	Median	NaN	NaN	NaN	0	0	Median	0.98177	1.1582	NaN	1	0	Median	1.2649	1.2826	NaN	1	1	Median	1.3855	1.4844	NaN	1	0	Median	58752000	31493000	27259000	0	0	0	16088000	8818900	7269400	19627000	12755000	6871800	23037000	9918400	13118000	7037	2283	6648	43686;43687;43688;43689	59362;59363;59364;59365;59366;59367	59362			6	
DEIGEFSDNIEFYAK	1	Unmodified	1775.789	0.78901076	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	86.734	86.426	2	1.2093E-05	78507	160511_QHF_FH_JSI12i_1	85.845	76.158			1.3146	1.4531	27.798	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5185	1.7687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.138	1.1938	NaN	1	1	Median	71773000	31501000	40273000	0	0	0	50970000	20303000	30666000	0	0	0	20804000	11198000	9606000	7038	1895	6649	43690;43691;43692;43693	59368;59369;59370;59371;59372	59370			5	
DEIITTTVPEDIMSNR	0	Unmodified	1832.8826	0.88259357	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		78.818	78.571	2	6.2357E-05	71541	160511_QHF_FH_JSI11i_1	103.75	85.942			0.77395	0.79169	36.697	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55868	0.61075	NaN	1	1	Median	1.0722	1.0262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33051000	20698000	12353000	0	0	0	11701000	8697400	3003300	21350000	12001000	9349500	0	0	0	7039	740	6650	43694;43695	59373;59374	59373			2	
DEILPTTPISEQK	1	Unmodified	1469.7613	0.76133944	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.41	4		1	1	3	2				1	5	3	2	64.857	59.31	2	4.819E-07	53750	160511_QHF_FH_JSI12i_1	134.75	116.44			0.8847	0.95585	17.798	9	1	Median	1.157	0.97173	NaN	1	0	Median	0.79636	0.94516	19.064	3	1	Plateau	0.8847	0.87423	24.099	3	0	Median	0.81248	0.88205	11.363	2	0	Median	6724300000	3579400000	3145000000	1820600000	896270000	924340000	1743700000	997010000	746680000	1788800000	957280000	831480000	1371300000	728820000	642460000	7040	1227	6651	43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706	59375;59376;59377;59378;59379;59380;59381;59382;59383;59384;59385;59386;59387;59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398	59381			24	
DEILSLIHVFRPDISPYFGLFYEK	1	Unmodified	2897.5004	0.50036772	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	98.396	90.297	3;4	7.6359E-151	54043	160513_QHF_FH_JSI10Kac_6	272.78	235.22			0.86635	0.88784	7.7686	6	1	Median	1.0465	0.88784	2.1347	2	0	Median	0.72232	0.8502	13.734	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86635	0.9115	7.6906	2	1	Median	1597200000	853670000	743490000	711270000	355880000	355390000	590160000	329440000	260720000	0	0	0	295730000	168350000	127390000	7041	2489	6652	43707;43708;43709;43710;43711;43712	59399;59400;59401;59402;59403;59404;59405;59406;59407;59408	59408			10	
DEIQGVIDEIR	0	Unmodified	1285.6514	0.65139506	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				74.519	73.602	2	0.022334	65480	160511_QHF_FH_JSI9i_1	48.981	29.194			0.88433	0.7163	NaN	1	1	Median	0.88433	0.7163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13484000	7496900	5987500	13484000	7496900	5987500	0	0	0	0	0	0	0	0	0	7042	1176	6653	43713	59409	59409			1	
DEIQIYQSNLSVK	1	Unmodified	1535.7831	0.78313752	2292	Q0VDG4	SCRN3	Secernin-3	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	62.381	61.892	2	0.00078067	55979	160511_QHF_FH_JSI10i_1	77.305	59.037			0.41299	0.50981	14.7	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.49999	0.56862	NaN	1	0	Median	0.53315	0.50981	NaN	1	0	Median	0.41299	0.42505	NaN	1	0	Median	73072000	44432000	28640000	0	0	0	21065000	12540000	8524500	21038000	11944000	9094000	30970000	19948000	11022000	7043	2292	6654	43714;43715;43716	59410;59411	59411			2	
DEISVDSLDFNK	1	Unmodified	1380.6409	0.64088996	2052;3018	P63151;Q66LE6	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	68.82	68.537	2	6.0709E-07	62166	160511_QHF_FH_JSI12i_1	106.35	89.122			1.2021	1.3943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2021	1.3943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115460000	47692000	67772000	0	0	0	115460000	47692000	67772000	0	0	0	0	0	0	7044	2052;3018	6655	43717;43718	59412;59413	59412			2	
DEISVDSLDFNKK	2	Unmodified	1508.7359	0.73585297	2052;3018	P63151;Q66LE6	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	1	2	59.59	58.985	2;3	8.9679E-07	53172	160511_QHF_FH_JSI10i_1	94.465	78.601			1.2692	1.3581	62.688	6	3	Median	1.6683	1.4144	NaN	1	1	Median	0.99143	1.1385	28.178	2	0	Median	1.3461	1.3274	NaN	1	1	Median	2.3739	2.5466	108.28	2	1	Median	557370000	130160000	427210000	31160000	9977600	21182000	92605000	44129000	48476000	28079000	11379000	16700000	405530000	64673000	340850000	7045	2052;3018	6656	43719;43720;43721;43722;43723;43724;43725;43726	59414;59415;59416;59417;59418;59419;59420;59421;59422	59419			8	
DEITSVLQDHLIK	1	Unmodified	1509.8039	0.80387296	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		79.555	78.926	3	0.00089512	69359	160511_QHF_FH_JSI11i_2	57.106	52.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7046	610	6657	43727	59423	59423			1	
DEKGMPVTAR	1	Acetyl (K)	1144.5547	0.55465791	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		37.906	29.01	2	0.0016744	16805	160513_QHF_FH_JSI11Kac_3	83.862	72.996			0.99811	1.0795	59.018	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3847	1.6386	NaN	1	0	Median	0.71947	0.7112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12100000	6482400	5617200	0	0	0	3933100	2060100	1873000	8166600	4422300	3744200	0	0	0	7047	1333	6658	43728;43729	59424	59424	1259		1	
DELASTK	1	Unmodified	762.37595	0.37594848	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.5933	8.2425	2	0.0074664	6118	160511_QHF_FH_JSI12i_1	87.323	62.324			0.66705	0.76166	29.963	4	1	Median	1.2001	0.97336	NaN	1	0	Median	0.75358	0.92481	NaN	1	0	Median	0.53414	0.52546	NaN	1	1	Median	0.59046	0.6273	NaN	1	0	Median	955670000	459900000	495770000	181610000	78788000	102820000	280530000	123600000	156940000	203960000	106480000	97483000	289560000	151030000	138530000	7048	1741	6659	43730;43731;43732;43733	59425;59426;59427;59428;59429	59426			5	
DELDELK	1	Unmodified	860.41273	0.41272792	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.324	34.08	2	0.012047	29899	160511_QHF_FH_JSI9i_1	69.998	32.905			3.2014	2.6537	NaN	1	0	Median	3.2014	2.6537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141660000	26902000	114760000	141660000	26902000	114760000	0	0	0	0	0	0	0	0	0	7049	1039	6660	43734	59430	59430			1	
DELGDYLK	1	Unmodified	951.45493	0.45492709	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	52.347	51.681	2	0.0053411	46659	160511_QHF_FH_JSI10i_1	63.48	28.672			0.78993	0.80872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78993	0.80872	NaN	1	1	Median	33317000	15355000	17962000	0	0	0	0	0	0	0	0	0	33317000	15355000	17962000	7050	4684	6661	43735;43736	59431;59432	59432			2	
DELGDYLKPK	2	Unmodified	1176.6027	0.60265396	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	2									1			1	49.348	48.406	3	3.3872E-05	43925	160511_QHF_FH_JSI12i_1	76.143	49.47			1.127	1.0683	44.797	2	1	Median	0.91419	0.77827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3894	1.4664	NaN	1	0	Median	93052000	39526000	53527000	31483000	16057000	15425000	0	0	0	0	0	0	61570000	23468000	38101000	7051	4684	6662	43737;43738	59433;59434	59433			2	
DELGDYLKPK	2	Acetyl (K)	1218.6132	0.61321864	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	70.771	61.443	2	0.00025901	30942	160513_QHF_FH_JSI11Kac_3	96.331	89.271			0.8985	1.006	27.111	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77055	0.9128	NaN	1	0	Median	0.59791	0.60691	NaN	1	0	Median	0.96086	1.0139	NaN	1	0	Median	25170000	14957000	10213000	0	0	0	9223100	6037800	3185300	5772400	3644200	2128200	10175000	5275300	4899200	7052	4684	6662	43739;43740;43741	59435;59436;59437;59438	59436	3217		4	
DELGEQVLGLK	1	Unmodified	1199.6398	0.63976774	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	68.081	67.497	2	5.6125E-06	60017	160511_QHF_FH_JSI9i_1	123.75	84.202			1.3331	1.1612	27.777	5	5	Median	1.4221	1.1612	NaN	1	1	Median	1.3331	1.5365	NaN	1	1	Median	1.0425	1.0139	NaN	1	1	Median	1.1154	1.1517	46.362	2	2	Median	340770000	131060000	209700000	69737000	24146000	45591000	85576000	34410000	51167000	74729000	29721000	45008000	110730000	42788000	67939000	7053	482	6663	43742;43743;43744;43745;43746;43747;43748;43749	59439;59440;59441;59442;59443;59444;59445;59446	59445			8	
DELGIPLK	1	Unmodified	883.50148	0.50148335	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.884	57.233	2	0.0046978	51588	160511_QHF_FH_JSI10i_1	67.903	40.765			0.93944	0.92096	8.9205	4	1	Median	1.0048	0.83129	NaN	1	0	Median	0.7672	0.90367	NaN	1	0	Median	1.0838	1.0308	NaN	1	0	Median	0.87836	0.93857	NaN	1	1	Median	212040000	115270000	96776000	53720000	30752000	22967000	46523000	27983000	18540000	51356000	23364000	27992000	60446000	33169000	27277000	7054	2352	6664	43750;43751;43752;43753	59447;59448;59449;59450;59451	59450			5	
DELHIVEAEAMNYEGSPIK	1	Unmodified	2144.0096	0.0095849934	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	2.2	12	23	8						1	15	8	10	11	84.985	84.358	2;3;4	7.6537E-245	74401	160511_QHF_FH_JSI9i_2	316.1	289.56			0.96866	0.98153	18.819	38	18	Median	1.1119	0.92114	22.153	11	8	Median	0.85773	1.0191	6.0407	8	3	Median	1.0365	1.0259	17.786	10	3	Median	0.94692	1.0304	13.89	9	4	Median	44602000000	21433000000	23169000000	10569000000	5447000000	5122400000	8739600000	4453800000	4285700000	12736000000	5452700000	7283500000	12556000000	6079400000	6477100000	7055	857	6665	43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797	59452;59453;59454;59455;59456;59457;59458;59459;59460;59461;59462;59463;59464;59465;59466;59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480;59481;59482;59483;59484;59485;59486;59487;59488;59489;59490;59491;59492;59493;59494;59495;59496;59497;59498;59499;59500;59501;59502;59503;59504;59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515;59516;59517;59518;59519;59520;59521;59522;59523;59524;59525;59526;59527;59528;59529;59530;59531;59532;59533;59534;59535;59536;59537;59538;59539;59540;59541;59542;59543;59544;59545;59546;59547;59548;59549;59550;59551;59552;59553;59554;59555;59556;59557;59558	59528			106	
DELHIVEAEAMNYEGSPIK	1	Oxidation (M)	2160.0045	0.0044996155	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.601	7	16	3							6	6	6	8	78.332	77.513	2;3	6.7157E-11	69079	160511_QHF_FH_JSI10i_2	128.1	115.25			1.0268	1.092	25.378	23	8	Median	1.1285	0.9598	19.053	5	1	Median	0.94283	1.1418	17.948	6	3	Median	1.2454	1.262	13.497	5	1	Median	1.0045	1.092	37.481	7	3	Median	3927300000	1914900000	2012400000	664420000	291750000	372670000	956750000	486250000	470500000	988620000	495380000	493250000	1317500000	641540000	675940000	7056	857	6665	43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810;43811;43812;43813;43814;43815;43816;43817;43818;43819;43820;43821;43822;43823	59559;59560;59561;59562;59563;59564;59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575;59576;59577;59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588;59589;59590;59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605	59605		391	47	
DELIHELK	1	Unmodified	995.52876	0.52876073	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	4	3	2	37.065	36.287	2;3	0.0040696	32606	160511_QHF_FH_JSI10i_1	69.825	48.525			1.0064	1.0055	41.905	9	6	Median	2.596	2.2487	NaN	1	1	Median	0.68138	0.83696	28.034	3	1	Median	1.0465	1.022	7.7376	3	2	Plateau	0.83648	0.93216	72.085	2	2	Median	389060000	194180000	194880000	56310000	17149000	39162000	126150000	75482000	50667000	102350000	49924000	52422000	104260000	51625000	52630000	7057	454	6666	43824;43825;43826;43827;43828;43829;43830;43831;43832;43833;43834	59606;59607;59608;59609;59610;59611;59612;59613;59614;59615	59610			10	
DELILEGNDIELVSNSAALIQQATTVK	1	Unmodified	2883.5077	0.50769752	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.943	4		2							2	2	1	1	102.31	102.19	3	2.0534E-98	93002	160511_QHF_FH_JSI10i_1	253.23	248.54			1.064	0.90968	27.952	6	0	Median	1.0778	0.88687	1.8786	2	0	Median	0.59866	0.68819	41.173	2	0	Median	1.0988	1.0627	NaN	1	0	Median	1.0669	1.1342	NaN	1	0	Median	4096600000	2029800000	2066800000	961060000	452240000	508810000	1188600000	665710000	522910000	895790000	417710000	478080000	1051100000	494120000	557020000	7058	1398	6667	43835;43836;43837;43838;43839;43840	59616;59617;59618;59619;59620;59621;59622;59623;59624;59625	59621			10	
DELKPAVTQLLWER	1	Unmodified	1696.9148	0.91482039	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	83.038	82.397	2;3	2.9492E-05	73235	160511_QHF_FH_JSI10i_2	116.43	105.96			0.96683	1.0546	6.8622	6	0	Median	1.191	1.0061	NaN	1	0	Median	0.92321	1.125	1.112	2	0	Median	1.0381	1.1053	NaN	1	0	Median	0.9373	0.9803	0.427	2	0	Median	197840000	97965000	99875000	39656000	16619000	23037000	61798000	27795000	34003000	38892000	20158000	18734000	57494000	33393000	24102000	7059	2605	6668	43841;43842;43843;43844;43845;43846	59626;59627;59628;59629;59630;59631;59632;59633	59631			8	
DELLGEKPEVK	2	Unmodified	1255.666	0.66598249	912	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	3									2			1	36.682	35.666	3	0.0038898	31554	160511_QHF_FH_JSI9i_1	55.452	47.728			0.52954	0.48639	89.053	2	2	Median	0.31715	0.25912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88416	0.91297	NaN	1	1	Median	74101000	35091000	39010000	27382000	11863000	15519000	0	0	0	0	0	0	46719000	23228000	23491000	7060	912	6669	43847;43848;43849	59634;59635;59636	59636			3	
DELMTILEK	1	Unmodified	1090.558	0.55801195	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	77.142	76.433	2	0.0129	69716	160511_QHF_FH_JSI12i_1	56.916	45.147			1.5223	1.4139	97.269	2	2	Median	3.4543	2.8128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6709	0.71075	NaN	1	1	Median	38404000	19197000	19207000	16397000	4974900	11422000	0	0	0	0	0	0	22008000	14222000	7785200	7061	5232	6670	43850;43851	59637;59638	59637			2	
DELNADHPFIYIIR	0	Unmodified	1714.8679	0.8678702	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.76	2	8	5					3	9	6	7	8	6	82.431	78.538	2;3	2.2585E-55	41532	160513_QHF_FH_JSI10Kac_6	204.48	171.39			0.92846	0.99078	14.164	25	2	Median	1.1765	1.0197	12.364	5	1	Median	0.89625	1.0573	8.6052	7	0	Median	0.8939	0.91726	21.206	7	1	Median	0.84715	0.93927	7.3058	6	0	Median	3858400000	1933900000	1924500000	931350000	415840000	515510000	1086300000	538160000	548090000	829470000	419770000	409700000	1011300000	560170000	451150000	7062	1464	6671	43852;43853;43854;43855;43856;43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876;43877;43878	59639;59640;59641;59642;59643;59644;59645;59646;59647;59648;59649;59650;59651;59652;59653;59654;59655;59656;59657;59658;59659;59660;59661;59662;59663;59664;59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675;59676;59677;59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691;59692;59693;59694;59695;59696	59696			58	
DELPIEVDLGK	1	Unmodified	1226.6394	0.63943339	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	77.509	76.972	2	0.010244	70098	160511_QHF_FH_JSI12i_1	57.348	33.194			0.40088	0.40953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40088	0.40953	NaN	1	1	Median	25724000	19556000	6168000	0	0	0	0	0	0	0	0	0	25724000	19556000	6168000	7063	4779	6672	43879	59697	59697			1	
DELQSER	0	Unmodified	875.39847	0.39847484	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.271	7.9108	2	0.0079153	5849	160511_QHF_FH_JSI12i_1	74.255	41.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7064	5479	6673	43880	59698	59698			1	
DELRETLK	1	Unmodified	1002.5346	0.53457439	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		22.554	21.939	2;3	0.016257	18734	160511_QHF_FH_JSI10i_2	46.158	22.73			1.2449	1.3196	59.875	4	2	Median	0.75536	0.64551	NaN	1	0	Median	1.4704	1.6994	63.153	2	1	Median	1.5839	1.6015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	546230000	235090000	311140000	153710000	98131000	55579000	93197000	37194000	56003000	299330000	99764000	199560000	0	0	0	7065	1664	6674	43881;43882;43883;43884	59699;59700;59701	59701			3	
DELTESPK	1	Unmodified	917.43419	0.43419164	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	5.47	4	1		1	3	4				1	4	5	3	17.438	13.058	2	0.00037623	11382	160511_QHF_FH_JSI9i_1	110.31	79.252			1.0389	1.0458	36.895	12	3	Median	1.2333	1.0036	NaN	1	0	Median	0.94044	1.1191	68.569	4	2	Median	1.08	1.0458	8.3669	4	0	Median	1.0931	0.91228	15.844	3	1	Plateau	3033200000	1504300000	1528900000	661080000	317960000	343120000	773220000	358610000	414600000	897720000	438000000	459730000	701130000	389680000	311450000	7066	3609	6675	43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895;43896;43897	59702;59703;59704;59705;59706;59707;59708;59709;59710;59711;59712;59713;59714;59715;59716;59717	59710			16	
DELTESPKYIQK	2	Acetyl (K)	1491.7457	0.74568938	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	57.192	47.804	2	7.8399E-12	25396	160513_QHF_FH_JSI12Kac_3	121.83	86.416			0.65533	0.70784	121.63	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2413	1.4389	NaN	1	0	Median	0.15541	0.15248	132.77	2	1	Median	0.67286	0.72697	3.771	2	0	Median	18367000	11726000	6641300	0	0	0	3993500	1430100	2563500	7725400	6264600	1460800	6648100	4031000	2617100	7067	3609	6676	43898;43899;43900;43901;43902;43903	59718;59719;59720;59721;59722;59723;59724;59725;59726;59727	59724	2890		10	
DELTLEGIK	1	Unmodified	1016.539	0.53899107	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.353	54.695	2	0.0016682	48543	160511_QHF_FH_JSI9i_1	76.827	16.237			0.97868	1.3526	40.411	4	2	Linear	1.9664	1.6684	NaN	1	1	Median	1.9483	2.3201	NaN	1	1	Median	0.97606	0.95652	NaN	1	0	Median	1.0198	1.0966	NaN	1	0	Median	162440000	73686000	88756000	36735000	14087000	22648000	36966000	13017000	23949000	45213000	28433000	16780000	43529000	18150000	25379000	7068	1481	6677	43904;43905;43906;43907	59728;59729;59730;59731	59731			4	
DELWLVMK	1	Oxidation (M)	1048.5263	0.52631789	721	O95747;Q9UEW8	OXSR1;STK39	Serine/threonine-protein kinase OSR1;STE20/SPS1-related proline-alanine-rich protein kinase	yes	no	0	0	1	0		By MS/MS		By MS/MS	14	0							2				1		1	75.768	65.191	2	0.02207	34675	160513_QHF_FH_JSI10Kac_4	66.682	23.436			0.52629	0.58564	32.53	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62897	0.7371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44038	0.4653	NaN	1	1	Median	4250200	2598000	1652200	0	0	0	1946600	1128300	818300	0	0	0	2303600	1469700	833910	7069	721	6678	43908;43909	59732;59733	59732			2	
DELWLVMK	1	Unmodified	1032.5314	0.53140327	721	O95747;Q9UEW8	OXSR1;STK39	Serine/threonine-protein kinase OSR1;STE20/SPS1-related proline-alanine-rich protein kinase	yes	no	0	0	0	0		By MS/MS			1	0	1										1			82.332	82.18	2	0.0083724	74560	160511_QHF_FH_JSI10i_1	67.032	20.606			4.7929	5.0777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.7929	5.0777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6663400	1495500	5167900	0	0	0	6663400	1495500	5167900	0	0	0	0	0	0	7070	721	6678	43910	59734	59734			1	
DEMLQMIR	0	Unmodified	1034.4889	0.48888653	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.613	57.964	2	0.0022136	52641	160511_QHF_FH_JSI12i_1	81.784	56.89			0.92448	0.91278	6.7012	4	2	Median	1.181	0.94879	NaN	1	0	Median	0.74937	0.86589	NaN	1	1	Median	0.884	0.87813	NaN	1	1	Median	0.9668	0.99838	NaN	1	0	Median	109610000	57525000	52086000	26429000	9481800	16947000	27250000	16861000	10388000	26837000	16351000	10486000	29096000	14831000	14265000	7071	403	6679	43911;43912;43913;43914	59735;59736;59737;59738	59736			4	
DENAIYFLGNSLGLQPK	1	Unmodified	1877.9523	0.95232811	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.47	101.36	2;3	1.8725E-22	91937	160511_QHF_FH_JSI12i_1	222.74	182.16			1.0186	0.99009	19.299	8	0	Median	1.0878	0.89619	6.5262	2	0	Median	0.94816	1.1032	7.7281	2	0	Median	1.0927	1.0722	21.552	2	0	Median	0.97721	1.0253	39.145	2	0	Median	1450100000	732700000	717450000	185270000	87290000	97983000	453350000	265100000	188260000	432370000	190860000	241510000	379150000	189450000	189700000	7072	2757	6680	43915;43916;43917;43918;43919;43920;43921;43922	59739;59740;59741;59742;59743;59744;59745;59746;59747;59748;59749;59750	59742			12	
DENATLDGGDVLFTGR	0	Unmodified	1678.7798	0.77984305	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	70.365	69.856	2	3.1014E-15	63395	160511_QHF_FH_JSI10i_1	162.93	135.96			1.2303	1.1776	12.18	5	2	Median	1.2915	1.0729	NaN	1	0	Median	0.81321	0.98575	NaN	1	0	Median	1.3085	1.274	9.6167	2	2	Median	1.1372	1.1776	NaN	1	0	Median	402550000	175570000	226980000	77035000	32104000	44931000	80927000	37632000	43295000	170180000	66582000	103600000	74407000	39251000	35156000	7073	603	6681	43923;43924;43925;43926;43927	59751;59752;59753;59754;59755	59754			5	
DENFILK	1	Unmodified	877.45453	0.45453316	1350	P30414	NKTR	NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.483	48.817	2	0.011696	44352	160511_QHF_FH_JSI12i_1	60.972	17.972			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7074	1350	6682	43928	59756	59756			1	
DENGELR	0	Unmodified	831.37226	0.37226009	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.5682	7.216	2	0.01409	5145	160511_QHF_FH_JSI12i_1	58.167	23.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7075	279	6683	43929	59757	59757			1	
DENKVDGMNAPK	2	Unmodified	1316.6031	0.60306466	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			16.819	16.57	3	0.027216	14062	160511_QHF_FH_JSI10i_1	37.998	25.784			5.0641	5.9578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.0641	5.9578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90118000	27232000	62886000	0	0	0	90118000	27232000	62886000	0	0	0	0	0	0	7076	1237	6684	43930	59758	59758			1	
DENLALYVENQFR	0	Unmodified	1609.7736	0.77363546	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									3	4	4	3	92.413	92.046	2;3	2.5883E-40	83764	160511_QHF_FH_JSI11i_1	175.74	166.74			1.8122	1.8414	90.853	11	11	Median	0.80159	0.65459	77.836	3	3	Median	0.87623	1.0448	94.639	4	4	Median	1.9588	1.8993	NaN	1	1	Median	3.0358	3.1999	132.59	3	3	Plateau	1193500000	555610000	637860000	113470000	60750000	52722000	685290000	348580000	336710000	59901000	19362000	40539000	334810000	126920000	207890000	7077	793	6685	43931;43932;43933;43934;43935;43936;43937;43938;43939;43940;43941;43942;43943;43944	59759;59760;59761;59762;59763;59764;59765;59766;59767;59768;59769;59770;59771;59772	59762			14	
DENPFASLTATSQPIAAAAR	0	Unmodified	2030.0069	0.006882877	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			87.538	86.715	2	1.5684E-05	77100	160511_QHF_FH_JSI9i_1	118.13	98.289			0.66334	0.54002	NaN	1	1	Median	0.66334	0.54002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16475000	12704000	3771700	16475000	12704000	3771700	0	0	0	0	0	0	0	0	0	7078	647	6686	43945;43946;43947	59773;59774;59775	59774			3	
DENSVELTMAEGPYK	1	Unmodified	1681.7505	0.75051676	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.005	61.369	2	1.1823E-51	55430	160511_QHF_FH_JSI10i_1	213.73	197.2			1.0058	0.96011	11.186	4	0	Median	0.99453	0.81843	NaN	1	0	Median	0.76296	0.91311	NaN	1	0	Median	1.0172	1.0095	NaN	1	0	Median	1.031	1.0511	NaN	1	0	Median	344230000	177240000	166990000	80439000	41964000	38476000	77596000	45168000	32428000	102800000	52971000	49827000	83397000	37138000	46259000	7079	2569	6687	43948;43949;43950;43951	59776;59777;59778;59779;59780;59781;59782;59783;59784	59780			9	
DEPDTNLVALMK	1	Unmodified	1344.6595	0.65951691	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	76.359	75.007	2	1.3842E-05	67362	160511_QHF_FH_JSI9i_1	127.4	113.81			0.81942	0.8081	19.455	9	8	Median	0.96774	0.7853	10.502	2	2	Median	0.71269	0.8461	11.4	2	2	Median	0.74862	0.73755	12.92	2	2	Median	0.78196	0.80985	28.446	3	2	Plateau	3738200000	1975500000	1762700000	847200000	397290000	449910000	922280000	497570000	424700000	905010000	478320000	426690000	1063700000	602270000	461420000	7080	694	6688	43952;43953;43954;43955;43956;43957;43958;43959;43960	59785;59786;59787;59788;59789;59790;59791;59792;59793;59794;59795;59796;59797	59796			13	
DEPDWESLIFLAR	0	Unmodified	1589.7726	0.77257283	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	102.31	102.21	2	0.0024601	92820	160511_QHF_FH_JSI12i_1	67.153	36.589			2.1149	2.1068	3.1415	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2409	2.1541	NaN	1	1	Median	1.996	2.0605	NaN	1	1	Median	99506000	23339000	76167000	0	0	0	0	0	0	47878000	12109000	35768000	51628000	11229000	40399000	7081	1693	6689	43961;43962	59798;59799	59799			2	
DEPEDDGYFVPPK	1	Unmodified	1506.6515	0.65145464	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			54.262	53.474	2	0.00069656	48326	160511_QHF_FH_JSI10i_1	67.334	49.47			1.6325	1.5434	17.499	2	2	Median	1.7064	1.3638	NaN	1	1	Median	1.5618	1.7467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58031000	20168000	37863000	25002000	8393300	16609000	33028000	11775000	21253000	0	0	0	0	0	0	7082	998	6690	43963;43964;43965	59800;59801;59802;59803	59801			4	
DEPGAWEETFK	1	Unmodified	1307.567	0.56699673	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	60.319	57.956	2	3.4284E-18	51520	160511_QHF_FH_JSI9i_1	163.16	153.77			1.0815	1.0471	23.004	5	0	Median	1.1124	0.91554	NaN	1	0	Median	0.88529	1.0471	NaN	1	0	Median	1.0815	1.0548	NaN	1	0	Median	1.167	1.2447	37.87	2	0	Median	3325900000	1659100000	1666800000	800870000	347410000	453470000	897280000	498200000	399080000	782160000	399390000	382770000	845610000	414080000	431530000	7083	2569	6691	43966;43967;43968;43969;43970	59804;59805;59806;59807;59808;59809;59810;59811;59812;59813;59814;59815;59816	59814			13	
DEPGEQVELK	1	Unmodified	1142.5455	0.54553301	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.077	30.746	2	0.005371	27370	160511_QHF_FH_JSI10i_1	54.066	41.84			1.1648	1.3873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1648	1.3873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44685000	26888000	17797000	0	0	0	44685000	26888000	17797000	0	0	0	0	0	0	7084	5633	6692	43971	59817	59817			1	
DEPNSTPEK	1	Unmodified	1015.4458	0.44581896	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	8.2819	5.6322	2	2.3118E-05	5508	160511_QHF_FH_JSI10i_1	105.57	86.837			0.91568	0.92675	26.243	6	2	Median	1.422	1.158	NaN	1	1	Median	0.82959	0.968	NaN	1	0	Median	0.91568	0.88665	0.095924	2	0	Median	1.1485	1.1986	48.626	2	1	Median	1720800000	891730000	829090000	434180000	220600000	213580000	344080000	165010000	179080000	458960000	228990000	229970000	483600000	277140000	206470000	7085	596	6693	43972;43973;43974;43975;43976;43977	59818;59819;59820;59821;59822;59823;59824;59825	59824			8	
DEPQRETLK	1	Unmodified	1114.5619	0.56185177	1197	P21926	CD9	CD9 antigen	yes	yes	0	0	0	1		By MS/MS	By MS/MS		5.33	6.13	2						1				1	2		10.465	10.284	2;3	0.0092542	8042	160511_QHF_FH_JSI10i_1	69.423	26.177			1.013	1.0922	6.5887	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96035	1.1443	NaN	1	0	Median	1.0685	1.0425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	391200000	188120000	203080000	0	0	0	220490000	114160000	106330000	170710000	73956000	96753000	0	0	0	7086	1197	6694	43978;43979;43980	59826;59827;59828	59827			3	
DEPSVAAMVYPFTGDHK	1	Unmodified	1862.8509	0.85089951	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	81.562	81.022	3	3.2997E-05	72176	160511_QHF_FH_JSI9i_1	76.574	71.146			0.93188	0.75884	24.482	6	2	Linear	1.2103	0.99984	15.841	2	1	Median	0.88767	1.0616	41.389	2	1	Median	0.75956	0.74562	NaN	1	0	Median	0.80236	0.84052	NaN	1	0	Median	651780000	367040000	284740000	134540000	64112000	70432000	170780000	100730000	70049000	184540000	109780000	74757000	161910000	92417000	69497000	7087	1798	6695	43981;43982;43983;43984;43985;43986	59829;59830;59831;59832;59833;59834;59835;59836;59837	59834			9	
DEPTGEVLSLVGK	1	Unmodified	1342.698	0.6980109	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.275	76.797	2	4.944E-05	69948	160511_QHF_FH_JSI12i_1	111.86	77.469			0.49572	0.72872	22.064	4	1	Linear	0.75441	0.61486	NaN	1	0	Median	0.4904	0.57288	NaN	1	0	Median	0.89001	0.86367	NaN	1	1	Median	0.82494	0.87003	NaN	1	0	Median	254490000	152730000	101760000	55884000	29422000	26462000	72457000	39028000	33428000	75840000	48183000	27657000	50308000	36101000	14208000	7088	552	6696	43987;43988;43989;43990	59838;59839;59840;59841;59842	59839			5	
DEQLESLFQR	0	Unmodified	1263.6095	0.60953025	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	9						3			3	3	2	4	71.74	68.225	2	5.5011E-12	61390	160511_QHF_FH_JSI9i_1	154.56	79.176			0.7331	0.68208	88.62	10	9	Median	1.2479	1.0128	NaN	1	0	Median	0.35744	0.40401	107.54	3	3	Median	0.84423	0.82434	125.14	2	2	Median	0.73394	0.78268	97.034	4	4	Median	2963400000	1581400000	1382000000	423880000	203840000	220050000	839700000	491830000	347870000	937100000	557390000	379700000	762710000	328320000	434390000	7089	832	6697	43991;43992;43993;43994;43995;43996;43997;43998;43999;44000;44001;44002	59843;59844;59845;59846;59847;59848;59849;59850;59851;59852;59853;59854;59855;59856;59857;59858	59854			16	
DEQLLHLSSQLEDSYNQVQSFSK	1	Unmodified	2694.2773	0.27730366	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		96.524	96.263	3	0.0079411	87509	160511_QHF_FH_JSI11i_1	32.391	28.659			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7090	2574	6698	44003	59859	59859			1	
DEQQISAAVEK	1	Unmodified	1216.5935	0.59354583	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.391	31.815	2	0.00096472	28674	160511_QHF_FH_JSI12i_1	86.879	64.166			0.41124	0.42093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41124	0.42093	NaN	1	0	Median	26609000	13611000	12998000	0	0	0	0	0	0	0	0	0	26609000	13611000	12998000	7091	3175	6699	44004	59860	59860			0	
DEREGNSPSFFNPEEAATVTSYLK	1	Unmodified	2687.2351	0.23510449	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	96.778	96.641	3	0.0010984	87533	160511_QHF_FH_JSI10i_1	41.763	28.834			1.052	1.0576	27.551	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1244	1.3265	34.296	2	1	Median	NaN	NaN	NaN	0	0	Median	1.052	1.0576	NaN	1	1	Median	53208000	27459000	25749000	0	0	0	43522000	21614000	21908000	0	0	0	9685800	5845200	3840600	7092	4856	6700	44005;44006;44007	59861;59862;59863;59864	59862			4	
DESANQEEPEAR	0	Unmodified	1373.5695	0.56951593	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.33	5.19	1				2					1		1	1	11.476	6.3781	2	1.4797E-15	4056	160513_QHF_FH_JSI11Kac_2	137.89	118.11			1.2961	1.0743	71.206	3	1	Plateau	1.2961	1.0743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5036	1.4235	NaN	1	0	Median	3.8053	4.143	NaN	1	1	Median	91648000	33200000	58448000	85349000	31309000	54040000	0	0	0	4852500	1578600	3273900	1446200	312350	1133900	7093	1710	6701	44008;44009;44010	59865;59866;59867	59865			3	
DESPEGSAADDLYSMLEEER	0	Unmodified	2241.922	0.92195178	2737	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	96.987	96.874	2	4.3162E-11	87886	160511_QHF_FH_JSI11i_1	102.28	84.476			1.1141	1.2261	14.047	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1634	1.3542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0669	1.1102	NaN	1	0	Median	22846000	10143000	12704000	0	0	0	14551000	5751100	8800000	0	0	0	8295100	4391600	3903500	7094	2737	6702	44011;44012;44013	59868;59869;59870;59871	59868			4	
DESTDSGLSMSSYSVPR	0	Unmodified	1816.7785	0.77852242	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	56.713	56.129	2	1.0498E-65	49904	160511_QHF_FH_JSI9i_1	233.37	225.26			1.1002	1.0369	19.595	7	6	Median	1.2765	1.0369	NaN	1	0	Median	1.2065	1.4189	11.362	2	2	Median	0.97924	0.92998	13.824	2	2	Median	1.0356	1.0743	9.1587	2	2	Median	441710000	201340000	240370000	51805000	20662000	31143000	127680000	54445000	73239000	144600000	72131000	72470000	117620000	54100000	63516000	7095	1598	6703	44014;44015;44016;44017;44018;44019;44020	59872;59873;59874;59875;59876;59877;59878;59879;59880;59881	59881			10	
DETEFYLGK	1	Unmodified	1100.5026	0.50260556	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				2	2	2	3	51.153	45.058	2	1.1692E-23	27014	160513_QHF_FH_JSI11Kac_3	179.21	153.32			0.97557	0.94772	13.218	8	0	Median	1.0213	0.83182	5.3735	2	0	Median	0.9223	1.0857	13.129	2	0	Median	0.96032	0.94772	3.4916	2	0	Median	0.87314	0.94665	17.317	2	0	Median	5854600000	2868000000	2986600000	1403100000	720810000	682290000	1472600000	720350000	752280000	1620300000	789290000	831020000	1358600000	637550000	721050000	7096	1135	6704	44021;44022;44023;44024;44025;44026;44027;44028;44029	59882;59883;59884;59885;59886;59887;59888;59889;59890;59891;59892;59893;59894;59895;59896;59897	59887			16	
DETEFYLGKR	1	Acetyl (K)	1298.6143	0.61428128	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		67.023	57.423	2	0.00025497	29464	160513_QHF_FH_JSI11Kac_3	93.551	64.464			0.081154	0.077152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.081154	0.077152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1940700	1917600	23147	0	0	0	0	0	0	1940700	1917600	23147	0	0	0	7097	1135	6705	44030	59898	59898	988		1	
DETGELSSADEK	1	Unmodified	1279.5416	0.54156984	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.21	5			3	2					2	3	3	2	23.407	19.365	2	7.2045E-16	17016	160511_QHF_FH_JSI11i_1	159.83	150.05			1.3709	1.4594	44.6	10	8	Median	1.2474	1.0273	71.751	2	2	Median	1.4315	1.6208	57.148	3	3	Median	1.3129	1.3141	22.597	3	2	Median	1.3519	1.3862	62.328	2	1	Median	644700000	327410000	317290000	243380000	110900000	132490000	101520000	55394000	46128000	127050000	62463000	64586000	172750000	98658000	74093000	7098	3904	6706	44031;44032;44033;44034;44035;44036;44037;44038;44039;44040	59899;59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910	59900			12	
DETIHIYDMK	1	Unmodified	1263.5805	0.58053831	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	48.793	48.293	3	0.01132	43670	160511_QHF_FH_JSI11i_1	57.532	53.233			0.94604	1.1014	13.908	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94604	1.1014	NaN	1	0	Median	1.2941	1.2692	NaN	1	0	Median	0.89443	0.96104	NaN	1	0	Median	138040000	70042000	68000000	0	0	0	50271000	27910000	22361000	44114000	21835000	22279000	43657000	20297000	23360000	7099	5070	6707	44041;44042;44043	59911;59912	59911			0	
DETLETEK	1	Unmodified	963.43967	0.43967095	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.4	5.39	3				2					1		1	3	15.338	12.165	2	0.004669	6246	160513_QHF_FH_JSI12Kac_2	85.064	58.462			0.44388	0.36945	136.16	5	5	Median	0.44388	0.36945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3004	0.28851	NaN	1	1	Median	2.5726	2.7284	147.34	3	3	Median	925980000	490570000	435410000	328910000	185690000	143220000	0	0	0	9158000	6486300	2671700	587910000	298400000	289520000	7100	1941	6708	44044;44045;44046;44047;44048	59913;59914;59915;59916;59917	59917			5	
DETNYGIPQR	0	Unmodified	1191.552	0.55201537	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	1	2	2	33.238	29.904	2	1.4122E-25	26935	160511_QHF_FH_JSI11i_1	189.7	175.03			0.823	0.87382	9.341	6	0	Median	1.0829	0.89574	NaN	1	0	Median	0.61402	0.72487	NaN	1	0	Median	0.86079	0.84228	10.37	2	0	Median	0.82228	0.88196	4.8132	2	0	Median	3119700000	1653600000	1466100000	562070000	240340000	321730000	809200000	490520000	318680000	823630000	430210000	393420000	924830000	492550000	432270000	7101	2061	6709	44049;44050;44051;44052;44053;44054;44055	59918;59919;59920;59921;59922;59923;59924;59925;59926;59927;59928	59919			11	
DETVSDCSPHIANIGR	0	Unmodified	1769.8003	0.80026092	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		41.468	41.095	2	6.2327E-15	37124	160511_QHF_FH_JSI11i_1	156.36	145.04			0.89615	0.94937	34.221	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0628	1.2093	NaN	1	1	Median	0.75559	0.74532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52218000	25763000	26456000	0	0	0	24395000	9227200	15167000	27824000	16535000	11288000	0	0	0	7102	1607	6710	44056;44057;44058	59929;59930;59931;59932;59933	59931			5	
DEVAHTVTESR	0	Unmodified	1242.584	0.58404378	1378	P31751	AKT2	RAC-beta serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	13.175	12.512	2	1.1074E-05	10255	160511_QHF_FH_JSI12i_1	107.79	87.459			1.3591	1.2366	39.69	2	1	Median	2.0372	1.6373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90675	0.93401	NaN	1	0	Median	61092000	28860000	32231000	26436000	10040000	16397000	0	0	0	0	0	0	34655000	18820000	15835000	7103	1378	6711	44059;44060	59934;59935;59936	59935			3	
DEVFGTVK	1	Unmodified	893.44945	0.44944778	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	34.395	33.929	2	0.0033453	30610	160511_QHF_FH_JSI12i_1	73.248	0.20937			0.86093	0.97033	2.519	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80309	0.9532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92295	0.98777	NaN	1	0	Median	979150000	559750000	419400000	0	0	0	566260000	344780000	221480000	0	0	0	412890000	214970000	197920000	7104	2306	6712	44061;44062	59937;59938	59937			2	
DEVLANR	0	Unmodified	815.41373	0.41373097	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	15.527	12.159	2	0.008921	10486	160511_QHF_FH_JSI9i_1	81.381	54.261			0.91457	0.93341	19.817	7	2	Median	1.2464	1.0241	NaN	1	0	Median	0.90733	1.0705	19.374	2	0	Median	0.97506	0.96145	9.4783	2	1	Median	0.66364	0.71457	1.2229	2	1	Median	1581300000	776730000	804570000	373380000	167670000	205720000	443030000	251390000	191640000	429330000	198680000	230650000	335560000	158990000	176560000	7105	2094	6713	44063;44064;44065;44066;44067;44068;44069;44070	59939;59940;59941;59942;59943;59944;59945;59946;59947;59948;59949	59946			11	
DEVLKIMPVQK	2	Acetyl (K);Oxidation (M)	1356.7323	0.73228792	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	1	1			By MS/MS		12.7	0.471					1	2						3		66.173	56.569	2	0.00022426	29156	160513_QHF_FH_JSI11Kac_3	88.948	78.118			1.5429	1.5182	407.29	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5429	1.5182	407.29	2	1	Median	NaN	NaN	NaN	0	0	Median	7829200	5734400	2094700	0	0	0	0	0	0	7829200	5734400	2094700	0	0	0	7106	1084	6714	44071;44072;44073	59950;59951;59952	59951	928	728	3	
DEVLKIMPVQK	2	Acetyl (K)	1340.7374	0.7373733	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	77.811	69.353	2	0.00016526	34473	160513_QHF_FH_JSI12Kac_3	93.111	72.807			1.208	1.418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.208	1.418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11100000	8539200	2560900	0	0	0	5101500	2540600	2560900	3751100	3751100	0	2247500	2247500	0	7107	1084	6714	44074;44075;44076	59953;59954;59955	59954	928		3	
DEVPYLRK	1	Unmodified	1018.5447	0.54474515	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		30.758	30.378	3	0.0051463	25772	160511_QHF_FH_JSI11i_2	53.968	37.765			1.6705	1.661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6705	1.661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30235000	14099000	16136000	0	0	0	0	0	0	30235000	14099000	16136000	0	0	0	7108	1313	6715	44077;44078	59956;59957	59956			2	
DEVVAYPLYILYENGETFLTYISLLHSPGNIGK	1	Unmodified	3727.9025	0.90253096	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.95	98.234	3;4	3.9427E-79	58159	160513_QHF_FH_JSI10Kac_6	191.12	176.18			0.837	1.0015	3.1391	2	1	Median	NaN	NaN	NaN	0	0	Median	0.837	1.0015	3.1391	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59429000	35406000	24022000	0	0	0	59429000	35406000	24022000	0	0	0	0	0	0	7109	4284	6716	44079;44080	59958;59959	59958			2	
DEVYHILK	1	Unmodified	1015.5338	0.53384611	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		40.072	39.106	3	0.0040255	34240	160511_QHF_FH_JSI9i_2	50.703	34.501			1.3854	1.7114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3854	1.7114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14414000	7282900	7131100	0	0	0	14414000	7282900	7131100	0	0	0	0	0	0	7110	648	6717	44081;44082;44083	59960;59961;59962	59960			3	
DEWTQLDMFYR	0	Unmodified	1502.65	0.65001485	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	92.018	91.591	2	0.0057935	83343	160511_QHF_FH_JSI11i_1	63.283	45.847			0.88567	0.87746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88567	0.87746	NaN	1	1	Median	10538000	6138800	4399400	0	0	0	0	0	0	0	0	0	10538000	6138800	4399400	7111	4959	6718	44084;44085;44086	59963;59964;59965	59963			3	
DEYLINSQTTEHIVK	1	Unmodified	1788.8894	0.8893935	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			55.291	54.895	3	0.0026758	49548	160511_QHF_FH_JSI10i_1	55.414	51.172			0.2468	0.28069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2468	0.28069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24236000	20657000	3579200	0	0	0	24236000	20657000	3579200	0	0	0	0	0	0	7112	4983	6719	44087	59966;59967	59967			2	
DEYSSSETTGEKPEQNDDDTIK	2	Unmodified	2487.0409	0.040880939	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		26.31	25.732	3	3.8812E-18	22642	160511_QHF_FH_JSI10i_1	136.58	132.85			1.0736	0.90584	26.775	3	2	Median	1.0736	0.90584	NaN	1	1	Median	0.55868	0.66525	NaN	1	1	Median	1.1834	1.1339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104620000	56852000	47763000	30594000	15123000	15472000	36893000	23437000	13456000	37128000	18293000	18836000	0	0	0	7113	3653	6720	44088;44089;44090	59968;59969;59970;59971;59972;59973;59974	59972			7	
DFAADSWSLAVDSSFLQQHKK	2	Unmodified	2379.1495	0.14952437	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	89.678	89.589	4	0.0022896	77776	160511_QHF_FH_JSI12i_3	43.164	38.511			0.72465	0.75793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72465	0.75793	NaN	1	1	Median	17888000	9410300	8477400	0	0	0	0	0	0	0	0	0	17888000	9410300	8477400	7114	3915	6721	44091	59975	59975			1	
DFAAEVVHPGDLK	1	Unmodified	1396.6987	0.69867961	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	2.95	6	7	3				1			6	4	3	4	59.757	58.294	2;3	3.1988E-16	50517	160511_QHF_FH_JSI11i_2	168.3	139.57			0.83115	0.86337	43.875	15	8	Median	1.2107	1.0043	32.564	4	2	Median	0.77319	0.91704	37.005	4	2	Median	0.47889	0.48181	72.438	3	1	Median	0.8247	0.86308	9.1581	4	3	Median	1857100000	977320000	879800000	422990000	171400000	251590000	558830000	311100000	247730000	624920000	371120000	253800000	250380000	123700000	126680000	7115	1823	6722	44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103;44104;44105;44106;44107;44108	59976;59977;59978;59979;59980;59981;59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992;59993;59994;59995;59996;59997;59998;59999	59993			24	
DFAAVEEVAPAKPPR	1	Unmodified	1595.8308	0.83075641	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								2	2	2	58.501	57.595	2;3	1.6274E-11	49697	160511_QHF_FH_JSI12i_3	115.14	100.45			0.91016	2.1405	72.241	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.98523	1.1755	96.166	2	2	Median	0.56493	0.55536	NaN	1	1	Median	1.4664	1.6608	NaN	1	1	Median	136940000	61764000	75173000	0	0	0	72063000	31469000	40594000	12803000	8067900	4734900	52072000	22227000	29845000	7116	2902	6723	44109;44110;44111;44112;44113;44114	60000;60001;60002;60003;60004;60005	60005			6	
DFADILVQPTLEENK	1	Unmodified	1730.8727	0.87268081	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	92.118	91.336	2	0.0010142	81200	160511_QHF_FH_JSI9i_1	79.693	45.315			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3526100	0	3526100	3526100	0	3526100	0	0	0	0	0	0	0	0	0	7117	4997	6724	44115;44116	60006;60007	60007			2	
DFAIDIIK	1	Unmodified	933.51713	0.51713341	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.18	4	4	2				3	3		3	5	4	4	80.762	76.75	2	0.00021531	68327	160511_QHF_FH_JSI12i_2	119.29	82.27			1.0305	1.0525	16.828	15	0	Median	1.1991	0.95774	6.7641	3	0	Median	0.90848	1.0738	25.111	5	0	Median	1.0915	1.0908	19.957	3	0	Median	0.95942	1.0472	6.7724	4	0	Median	2744500000	1356600000	1387900000	505620000	217630000	287990000	831150000	461750000	369400000	710760000	314340000	396420000	696960000	362840000	334130000	7118	2641	6725	44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129;44130;44131;44132	60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019;60020;60021;60022;60023;60024;60025;60026;60027;60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038;60039;60040;60041;60042;60043;60044;60045;60046;60047;60048;60049	60013			42	
DFAKYEWIGQLMGAALR	1	Unmodified	1967.9928	0.99275314	2946	Q5T447	HECTD3	E3 ubiquitin-protein ligase HECTD3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.889	86.168	4	0.030323	49232	160513_QHF_FH_JSI10Kac_6	38.613	23.684			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45265000	0	45265000	0	0	0	45265000	0	45265000	0	0	0	0	0	0	7119	2946	6726	44133	60050	60050			1	
DFALDSEESR	0	Unmodified	1167.5044	0.50439648	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	1	3	3	40.918	38.057	2	0.00093461	34555	160511_QHF_FH_JSI12i_1	68.893	65.637			1.1224	1.1209	36.557	4	2	Median	1.8684	1.5117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83077	0.80663	31.602	2	1	Median	1.2051	1.2457	NaN	1	0	Median	212580000	101330000	111250000	51429000	20648000	30781000	0	0	0	81005000	39329000	41676000	80145000	41350000	38796000	7120	21	6727	44134;44135;44136;44137;44138;44139;44140;44141	60051;60052;60053;60054;60055;60056;60057;60058	60052			8	
DFAPLTPNIVR	0	Unmodified	1241.6768	0.67682195	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		75.349	74.636	2	0.013261	65856	160511_QHF_FH_JSI9i_2	53.683	42.193			0.65453	0.62683	28.281	2	2	Median	0.86805	0.76559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49353	0.51322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52981000	34759000	18222000	16616000	8280500	8335300	0	0	0	36365000	26479000	9886600	0	0	0	7121	2280	6728	44142;44143	60059;60060	60059			2	
DFAPPGQQK	1	Unmodified	986.48214	0.48214489	4469	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	25.03	24.647	2	0.00067508	21784	160511_QHF_FH_JSI12i_1	86.953	23.474			1.088	1.0865	36.655	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.35904	0.43967	NaN	1	1	Median	0.96472	0.95407	NaN	1	0	Median	0.82594	0.88239	8.5679	2	1	Median	1310800000	819740000	491100000	0	0	0	279210000	217100000	62107000	419830000	224210000	195620000	611800000	378430000	233370000	7122	4469	6729	44144;44145;44146;44147	60061;60062;60063;60064	60063			4	
DFAPVIVEAFK	1	Unmodified	1234.6598	0.6597749	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	99.767	99.623	2	0.00013413	87354	160511_QHF_FH_JSI11i_2	95.573	66.486			0.4162	0.42772	71.865	4	4	Median	NaN	NaN	NaN	0	0	Median	0.2802	0.33057	NaN	1	1	Median	0.9231	0.90573	75.942	2	2	Median	0.32967	0.34558	NaN	1	1	Median	68278000	40339000	27939000	0	0	0	17451000	13709000	3742300	33771000	16381000	17389000	17056000	10249000	6807100	7123	4189	6730	44148;44149;44150;44151	60065;60066;60067;60068	60067			4	
DFASEVSNVLNK	1	Unmodified	1321.6514	0.65139506	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	1		2	79.351	78.668	2	1.3332E-64	71479	160511_QHF_FH_JSI10i_1	225.67	170.14			0.88501	1.0496	29.048	4	2	Linear	1.073	0.89416	NaN	1	0	Median	0.81446	0.96043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3037	1.4008	28.262	2	2	Median	363960000	177710000	186250000	97538000	44474000	53065000	143080000	74340000	68745000	0	0	0	123330000	58893000	64440000	7124	3883	6731	44152;44153;44154;44155	60069;60070;60071;60072;60073;60074	60071			6	
DFATVYVEAIK	1	Unmodified	1254.6496	0.64960415	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	2	1	1	79.751	77.57	2	7.6618E-18	71571	160511_QHF_FH_JSI10i_1	155.42	133.18		+	0.56197	0.57006	35.262	6	2	Median	0.53035	0.44151	21.51	2	0	Median	0.49355	0.57006	10.117	2	1	Median	0.97727	0.95067	NaN	1	1	Median	0.85433	0.89918	NaN	1	0	Median	378010000	213870000	164140000	71352000	40267000	31085000	122970000	79153000	43812000	74369000	36288000	38081000	109320000	58162000	51157000	7125	58	6732	44156;44157;44158;44159;44160;44161	60075;60076;60077;60078;60079	60078			5	
DFAYGETDPLIR	0	Unmodified	1395.667	0.66704513	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		69.804	69.417	2	0.012779	63114	160511_QHF_FH_JSI11i_1	54.471	43.307			0.53657	0.51138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53657	0.51138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39170000	24073000	15097000	0	0	0	0	0	0	39170000	24073000	15097000	0	0	0	7126	2509	6733	44162	60080	60080			1	
DFAYGETDPLIRK	1	Unmodified	1523.762	0.76200815	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	58.971	58.432	3	0.049405	53220	160511_QHF_FH_JSI12i_1	26.532	13.971			2.1059	2.0689	9.3774	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2722	2.2107	NaN	1	1	Median	1.9517	1.9362	NaN	1	1	Median	48210000	15857000	32353000	0	0	0	0	0	0	34297000	11060000	23237000	13913000	4796900	9116100	7127	2509	6734	44163;44164	60081;60082	60082			2	
DFCFGPWK	1	Unmodified	1055.4535	0.4534873	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		80.33	79.664	2	0.0077607	69979	160511_QHF_FH_JSI11i_2	68.422	48.718			1.5902	1.7331	77.045	2	2	Median	NaN	NaN	NaN	0	0	Median	2.3701	2.9882	NaN	1	1	Median	1.0669	1.0051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28218000	11281000	16937000	0	0	0	11544000	3176000	8368200	16673000	8105000	8568400	0	0	0	7128	554	6735	44165;44166	60083;60084	60083			2	
DFDFESANAQFNK	1	Unmodified	1531.6579	0.657937	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		66.833	66.24	2	1.4795E-22	60003	160511_QHF_FH_JSI10i_1	180.36	152.59			0.84368	0.72483	21.939	3	2	Median	0.8726	0.72483	NaN	1	1	Median	0.84368	0.97775	NaN	1	0	Median	0.65085	0.63761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	311940000	172880000	139060000	115280000	51170000	64107000	101230000	60115000	41110000	95441000	61599000	33842000	0	0	0	7129	3625	6736	44167;44168;44169	60085;60086;60087	60086			3	
DFDTALK	1	Unmodified	808.39668	0.39668393	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	39.555	37.24	2	0.005331	33541	160511_QHF_FH_JSI11i_1	101.69	73.162			0.77344	0.69019	123.18	10	10	Median	0.77344	0.63931	126.97	2	2	Median	0.73157	0.8765	149.94	2	2	Median	1.2271	1.1961	160.91	3	3	Plateau	0.75511	0.79949	139.88	3	3	Plateau	5527900000	2779900000	2748000000	1123000000	598940000	524050000	1399000000	761530000	637430000	1667200000	707420000	959780000	1338800000	712050000	626730000	7130	1386	6737	44170;44171;44172;44173;44174;44175;44176;44177;44178;44179	60088;60089;60090;60091;60092;60093;60094;60095;60096;60097;60098;60099;60100;60101	60090			14	
DFDTALKHYDK	2	Acetyl (K)	1393.6514	0.65139506	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By matching	By MS/MS		14.5	0.5							1	1			1	1		61.884	51.078	3	0.0070863	27812	160513_QHF_FH_JSI11Kac_5	44.829	38.881			0.80446	0.86806	72.92	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2357	1.4537	NaN	1	0	Median	0.52374	0.51834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13330000	7476900	5853000	0	0	0	5822600	2555600	3267100	7507300	4921300	2586000	0	0	0	7131	1386	6738	44180;44181	60102	60102	1334		1	
DFDWNLK	1	Unmodified	936.43413	0.43413207	3291;5654	Q7Z739;Q9Y5A9	YTHDF3;YTHDF2	YTH domain-containing family protein 3;YTH domain-containing family protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	66.784	66.113	2	0.0084038	59989	160511_QHF_FH_JSI11i_1	83.614	56.494			0.81868	0.86615	29.671	7	4	Median	0.7372	0.61379	48.706	2	1	Median	0.71005	0.86054	17.053	2	1	Median	1.0122	0.99248	7.0188	2	1	Median	0.6964	0.71171	NaN	1	1	Median	376670000	183870000	192800000	66113000	27474000	38639000	114430000	61568000	52865000	129600000	56473000	73126000	66529000	38354000	28175000	7132	3291;5654	6739	44182;44183;44184;44185;44186;44187;44188	60103;60104;60105;60106;60107;60108;60109;60110;60111;60112;60113	60103			11	
DFEAKLR	1	Unmodified	877.46577	0.46576654	3210	Q9P2P5;Q76N89	HECW2;HECW1	E3 ubiquitin-protein ligase HECW2;E3 ubiquitin-protein ligase HECW1	yes	no	0	0	0	1	By MS/MS	By matching		By matching	3	0			3							1	1		1	30.738	29.798	3	0.03514	24412	160511_QHF_FH_JSI9i_3	33.358	0			2.2223	2.5607	119.07	3	0	Median	7.1881	5.8702	NaN	1	0	Median	2.2223	2.5607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55887	0.56095	NaN	1	0	Median	131260000	54684000	76574000	37515000	4755000	32760000	33462000	10728000	22734000	0	0	0	60280000	39201000	21079000	7133	3210	6740	44189;44190;44191	60114	60114			1	
DFEEMRK	1	Unmodified	953.42767	0.42766648	938	P09669	COX6C	Cytochrome c oxidase subunit 6C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	5	4	20.401	19.912	2;3	0.0067182	16365	160511_QHF_FH_JSI11i_2	127.84	98.695			1.0352	1.0611	177.18	12	12	Median	1.5016	1.2715	197.61	2	2	Median	0.74024	0.91059	188.42	2	2	Median	1.2585	1.2346	191.19	4	4	Median	1.1563	1.1938	230.79	4	4	Median	2918200000	1478700000	1439600000	488430000	190390000	298040000	545070000	328800000	216270000	1109900000	535410000	574470000	774870000	424050000	350820000	7134	938	6741	44192;44193;44194;44195;44196;44197;44198;44199;44200;44201;44202;44203;44204	60115;60116;60117;60118;60119;60120;60121;60122;60123;60124;60125;60126;60127	60123			13	
DFEEYPEHR	0	Unmodified	1220.5098	0.5098162	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	3	1	26.776	26.096	2	2.1886E-16	21807	160511_QHF_FH_JSI11i_2	175.44	165.46			1.1854	0.88229	20.573	6	2	Linear	1.0354	0.86436	NaN	1	0	Median	0.7441	0.89935	37.588	2	1	Median	0.95693	0.94565	25.37	2	1	Median	0.82177	0.90058	NaN	1	0	Median	391190000	199100000	192100000	69230000	26580000	42650000	107520000	64437000	43083000	156290000	77313000	78980000	58153000	30770000	27383000	7135	231	6742	44205;44206;44207;44208;44209;44210;44211	60128;60129;60130;60131;60132;60133;60134;60135;60136;60137	60135			10	
DFEGAVDLLDK	1	Unmodified	1220.5925	0.5924832	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		82.389	82.166	2	0.0003338	74791	160511_QHF_FH_JSI11i_1	89.171	55.375			1.0753	1.0371	60.525	3	3	Median	NaN	NaN	NaN	0	0	Median	1.288	1.4325	81.432	2	2	Median	1.0753	1.0371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52462000	24995000	27467000	0	0	0	32874000	16749000	16125000	19589000	8246300	11343000	0	0	0	7136	3469	6743	44212;44213;44214	60138;60139;60140	60138			3	
DFEKAYK	2	Acetyl (K)	941.44945	0.44944778	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	43.286	34.366	2	0.04601	19083	160513_QHF_FH_JSI12Kac_3	66.799	10.677			0.32889	0.36994	55.496	2	2	Median	NaN	NaN	NaN	0	0	Median	0.21827	0.24987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49557	0.54772	NaN	1	1	Median	3857100	3095600	761500	0	0	0	1642000	1393800	248170	0	0	0	2215100	1701800	513330	7137	1567	6744	44215;44216	60141;60142	60141			2	
DFENSMNQVK	1	Unmodified	1210.5288	0.52883709	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	3	2	1	38.634	35.931	2	2.6755E-06	32274	160511_QHF_FH_JSI10i_1	166.16	110.49			0.53556	0.50173	100.67	8	8	Median	1.0069	0.8201	77.764	2	2	Median	0.25814	0.30369	140.35	3	3	Median	0.64868	0.63529	133.79	2	2	Median	0.49451	0.53196	NaN	1	1	Median	1214600000	662100000	552550000	275620000	128260000	147370000	435770000	265050000	170710000	501600000	267610000	233990000	1652700	1179400	473240	7138	538	6745	44217;44218;44219;44220;44221;44222;44223;44224	60143;60144;60145;60146;60147;60148;60149;60150	60146			8	
DFENSMNQVK	1	Oxidation (M)	1226.5238	0.52375171	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	9	5.66	1					2				1		1	1	29.503	24.151	2	0.0025824	11369	160513_QHF_FH_JSI11Kac_3	81.594	68.968			0.65717	0.58948	5.7819	3	2	Plateau	0.65717	0.53583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60673	0.59472	NaN	1	1	Median	0.5453	0.58948	NaN	1	1	Median	62404000	33510000	28895000	55944000	29499000	26444000	0	0	0	3881700	2416700	1465000	2579200	1593600	985570	7139	538	6745	44225;44226;44227	60151;60152;60153	60151		198	3	
DFENSMNQVKLLK	2	Acetyl (K);Oxidation (M)	1622.7974	0.79740737	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	1	0	1	1				By MS/MS	13.5	0.5						1	1						2	71.347	60.686	2	0.016212	31558	160513_QHF_FH_JSI12Kac_3	61.65	47.88			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	940460	940460	0	0	0	0	0	0	0	0	0	0	940460	940460	0	7140	538	6746	44228;44229	60154;60155	60154	277	198	2	
DFEPILEQQIHQDDFGESK	1	Unmodified	2274.0441	0.044056244	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	82.372	81.724	3	1.8553E-05	74328	160511_QHF_FH_JSI10i_1	72.421	67.091			0.50393	0.86203	43.944	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.73134	0.86203	51.796	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50393	0.56607	NaN	1	1	Median	164790000	97116000	67670000	0	0	0	114910000	68466000	46443000	0	0	0	49877000	28650000	21227000	7141	648	6747	44230;44231;44232	60156;60157;60158	60157			3	
DFEQPLAISR	0	Unmodified	1174.5982	0.59823728	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	4						4			1	3	2	2	65.137	58.681	2	7.7124E-34	53877	160511_QHF_FH_JSI11i_1	203.35	147.67			1.0957	1.1852	40.21	7	3	Median	1.0499	0.84946	NaN	1	0	Median	0.82565	0.98149	45.098	2	2	Median	1.7801	1.7373	48.495	2	1	Median	0.97082	1.0459	17.681	2	0	Median	1239100000	561450000	677660000	400750000	165660000	235090000	9042900	4837000	4205900	444570000	209280000	235300000	384740000	181670000	203070000	7142	98	6748	44233;44234;44235;44236;44237;44238;44239;44240	60159;60160;60161;60162;60163;60164;60165;60166;60167;60168;60169	60160			11	
DFESHITSYK	1	Unmodified	1225.5615	0.56151742	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	6.1		5						1	1	2	1	2	2	37.762	36.61	2;3	0.00012586	31215	160511_QHF_FH_JSI12i_2	98.249	88.468			1.5575	1.7149	44.071	5	5	Median	2.0614	1.7688	4.3839	2	2	Median	1.5575	1.9147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89118	0.983	56.444	2	2	Median	168490000	75074000	93413000	57567000	21065000	36502000	34332000	17252000	17080000	0	0	0	76588000	36757000	39831000	7143	40	6749	44241;44242;44243;44244;44245;44246;44247	60170;60171;60172;60173;60174;60175;60176	60171			7	
DFESSGLDR	0	Unmodified	1024.4462	0.44615331	2713	Q15814	TBCC	Tubulin-specific chaperone C	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.493	30.265	2	0.042177	27055	160511_QHF_FH_JSI11i_1	57.931	45.141			0.65448	0.63997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65448	0.63997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43757000	23711000	20046000	0	0	0	0	0	0	43757000	23711000	20046000	0	0	0	7144	2713	6750	44248	60177	60177			0	
DFETIGQNK	1	Unmodified	1050.4982	0.49818889	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	33.511	32.959	2	8.0014E-06	29554	160511_QHF_FH_JSI11i_1	130.22	80.631			0.98131	0.99432	170.49	5	4	Median	4.0213	3.3199	NaN	1	1	Median	1.2794	1.5152	285.08	2	2	Median	0.26504	0.26064	NaN	1	1	Median	0.98131	0.99432	NaN	1	0	Median	604260000	271140000	333120000	120770000	39713000	81059000	223420000	95677000	127740000	128150000	72670000	55478000	131920000	63077000	68843000	7145	5161	6751	44249;44250;44251;44252;44253;44254	60178;60179;60180;60181;60182;60183;60184	60178			7	
DFEVAMQK	1	Unmodified	966.44807	0.44806757	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	45.418	44.484	2	0.0079547	39523	160511_QHF_FH_JSI9i_1	67.981	49.25			0.54902	0.50629	49.752	2	2	Median	0.43285	0.35613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69637	0.71975	NaN	1	1	Median	135880000	83964000	51918000	62431000	43015000	19416000	0	0	0	0	0	0	73451000	40949000	32502000	7146	3133	6752	44255;44256	60185;60186	60186			2	
DFFAQQQHLTPDK	1	Unmodified	1573.7525	0.75250609	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	50.108	49.32	2	0.00016347	42276	160511_QHF_FH_JSI12i_2	73.067	57.801			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13278000	0	13278000	4520300	0	4520300	0	0	0	8757800	0	8757800	0	0	0	7147	4747	6753	44257;44258;44259	60187;60188;60189	60187			3	
DFFDAEIK	1	Unmodified	983.46001	0.46001246	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.35	6	1					2			1	3	1	4	66.429	63.337	2	0.00097275	57722	160511_QHF_FH_JSI11i_1	95.741	81.329			1.0832	0.97265	63.779	8	5	Median	1.1617	0.97112	NaN	1	0	Median	0.69302	0.81787	73.906	3	2	Median	1.01	0.97418	NaN	1	0	Median	0.9328	0.99574	89.054	3	3	Plateau	2586500000	1299100000	1287400000	337630000	141560000	196070000	897540000	428000000	469540000	509350000	270770000	238570000	841950000	458780000	383170000	7148	878	6754	44260;44261;44262;44263;44264;44265;44266;44267;44268	60190;60191;60192;60193;60194;60195;60196;60197;60198;60199;60200;60201;60202;60203;60204	60191			15	
DFFDAEIKK	2	Unmodified	1111.555	0.55497548	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		51.87	51.343	3	0.038838	44297	160511_QHF_FH_JSI11i_2	28.958	26.204			0.47712	0.46498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47712	0.46498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6252200	4980400	1271800	0	0	0	0	0	0	6252200	4980400	1271800	0	0	0	7149	878	6755	44269	60205	60205			1	
DFFEVAK	1	Unmodified	854.41742	0.41741937	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		56.552	56.137	2	0.035554	50749	160511_QHF_FH_JSI11i_1	50.632	22.209			0.3741	0.36323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3741	0.36323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13320000	9368800	3951000	0	0	0	0	0	0	13320000	9368800	3951000	0	0	0	7150	5024	6756	44270	60206	60206			1	
DFFHGLR	0	Unmodified	890.43989	0.43988615	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	49.112	48.259	3	0.0042173	41133	160511_QHF_FH_JSI12i_3	60.799	47.81			0.88893	0.93196	43.779	4	1	Median	0.47579	0.39815	NaN	1	1	Median	0.84451	0.99757	NaN	1	0	Median	0.96999	0.92464	NaN	1	0	Median	0.93568	0.93934	NaN	1	0	Median	215310000	110010000	105300000	14532000	9430200	5101600	26415000	11789000	14627000	80618000	43250000	37368000	93748000	45543000	48205000	7151	4996	6757	44271;44272;44273;44274	60207;60208;60209;60210;60211;60212;60213	60213			7	
DFFLANASR	0	Unmodified	1039.5087	0.50869399	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		59.377	58.874	2	0.0045942	51046	160511_QHF_FH_JSI11i_2	73.985	45.473			1.4564	1.4343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4564	1.4343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	153180000	64773000	88402000	0	0	0	0	0	0	153180000	64773000	88402000	0	0	0	7152	871	6758	44275	60214	60214			1	
DFFPETGTK	1	Unmodified	1040.4815	0.48147619	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.255	48.712	2	0.00082738	44039	160511_QHF_FH_JSI11i_1	78.334	59.604			0.91969	1.0243	12.154	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78218	0.93992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0814	1.1162	NaN	1	1	Median	244820000	111910000	132910000	0	0	0	126770000	59294000	67475000	0	0	0	118050000	52617000	65431000	7153	5549	6759	44276;44277;44278	60215;60216;60217	60215			3	
DFFQEVK	1	Unmodified	911.43888	0.43888309	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.472	52.807	2	0.010072	47989	160511_QHF_FH_JSI12i_1	66.682	47.205			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7154	171	6760	44279	60218	60218			1	
DFFQSYGNVVELR	0	Unmodified	1572.7573	0.75725712	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.74	5	4	2					1		4	3	3	2	87.202	85.733	2	5.1263E-99	74812	160511_QHF_FH_JSI12i_2	257.42	233.13			1.1011	1.1174	47.929	11	5	Median	1.1262	0.92534	57.278	4	3	Median	1.0578	1.2385	104.51	2	2	Median	1.1169	1.14	26.378	3	0	Median	1.0077	1.0819	16.87	2	0	Median	2279900000	1059900000	1220000000	654290000	279720000	374580000	419960000	179290000	240670000	684970000	334120000	350850000	520720000	266780000	253940000	7155	2381	6761	44280;44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291	60219;60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231;60232;60233;60234;60235;60236	60221			18	
DFGFLVDILYSALR	0	Unmodified	1627.861	0.86099391	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.31	99.593	2	0.00036315	58980	160513_QHF_FH_JSI10Kac_6	147.71	130.27			1.9178	2.221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9178	2.221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81681000	34534000	47147000	0	0	0	81681000	34534000	47147000	0	0	0	0	0	0	7156	610	6762	44292	60237	60237			1	
DFGGAVQDYFK	1	Unmodified	1245.5666	0.5666028	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	74.903	74.453	2	2.3925E-09	66134	160511_QHF_FH_JSI9i_1	129.85	99.597			1.2835	1.1405	55.52	6	4	Median	1.3816	1.1175	NaN	1	0	Median	1.0657	1.2654	72.664	2	2	Median	1.1924	1.164	NaN	1	0	Median	1.0489	1.1165	99.722	2	2	Median	271580000	118220000	153360000	50010000	16750000	33260000	90454000	40471000	49983000	57873000	22063000	35810000	73244000	38939000	34305000	7157	4460	6763	44293;44294;44295;44296;44297;44298	60238;60239;60240;60241;60242;60243;60244;60245	60244			8	
DFGGDVAAYVAPTNDLNGVR	0	Unmodified	2049.9756	0.97558275	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.652	84.191	2	1.332E-24	76543	160511_QHF_FH_JSI10i_1	170.95	148.07			1.1252	1.1251	16.702	4	0	Median	1.1697	0.98882	NaN	1	0	Median	0.97117	1.1306	NaN	1	0	Median	1.5085	1.4708	NaN	1	0	Median	1.0824	1.1196	NaN	1	0	Median	194920000	79637000	115280000	32697000	15732000	16965000	50198000	18299000	31899000	58219000	18504000	39715000	53808000	27102000	26706000	7158	485	6764	44299;44300;44301;44302	60246;60247;60248;60249;60250;60251;60252;60253;60254	60251			9	
DFGGVTNGKPEDK	2	Unmodified	1362.6416	0.64155866	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	26.468	25.846	2;3	0.0011934	22620	160511_QHF_FH_JSI11i_1	114.86	94.559			2.7415	2.6954	55.356	5	5	Median	4.7251	3.8726	16.583	2	2	Median	0.89432	1.0164	NaN	1	1	Median	2.7415	2.6954	NaN	1	1	Median	2.4112	2.5254	NaN	1	1	Median	279040000	75393000	203650000	167700000	19667000	148040000	31310000	14806000	16504000	50487000	31692000	18795000	29539000	9228200	20311000	7159	4777	6765	44303;44304;44305;44306;44307;44308	60255;60256;60257;60258;60259;60260	60255			6	
DFGIQPVEDK	1	Unmodified	1146.5557	0.55570376	4099	Q96GX2	ATXN7L3B	Putative ataxin-7-like protein 3B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	51.853	50.92	2	0.00076069	46176	160511_QHF_FH_JSI12i_1	83.948	64.161			1.2736	1.1861	45.412	2	2	Median	1.9945	1.6352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8133	0.86034	NaN	1	1	Median	89083000	36814000	52269000	53066000	17127000	35939000	0	0	0	0	0	0	36017000	19687000	16330000	7160	4099	6766	44309;44310	60261;60262	60261			2	
DFGLLVFVR	0	Unmodified	1064.6019	0.6018661	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.65		5	4						6	4	4	4	3	98.73	95.202	2	1.0951E-32	46417	160513_QHF_FH_JSI12Kac_6	194.25	172.5			1.124	1.108	61.767	13	5	Median	1.1498	1.0007	20.665	3	1	Median	1.1782	1.3898	82.604	4	2	Median	1.7952	1.7689	99.241	3	2	Plateau	0.76592	0.82998	43.305	3	0	Plateau	2465200000	1173300000	1291800000	389650000	195650000	194010000	827880000	422800000	405070000	837150000	327680000	509470000	410480000	227190000	183290000	7161	2094	6767	44311;44312;44313;44314;44315;44316;44317;44318;44319;44320;44321;44322;44323;44324;44325	60263;60264;60265;60266;60267;60268;60269;60270;60271;60272;60273;60274;60275;60276;60277;60278;60279;60280;60281	60279			19	
DFGLLVFVRK	1	Unmodified	1192.6968	0.69682911	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.98			7						16	7	6	6	4	88.5	82.85	2;3	7.6274E-19	44699	160513_QHF_FH_JSI10Kac_6	170.3	140.92			2.0852	2.1699	105.95	16	15	Median	2.7059	2.2891	128.04	5	4	Median	1.4907	1.7701	74.435	6	6	Median	1.0888	1.0461	200.83	2	2	Median	1.9626	2.0569	118.28	3	3	Median	965750000	368120000	597630000	140630000	59635000	80994000	599850000	232250000	367600000	102540000	28588000	73952000	122730000	47649000	75081000	7162	2094	6768	44326;44327;44328;44329;44330;44331;44332;44333;44334;44335;44336;44337;44338;44339;44340;44341;44342;44343;44344;44345;44346;44347;44348	60282;60283;60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304	60304			23	
DFGLYVVNMFDTHQAAR	0	Unmodified	1982.9309	0.93088116	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	91.546	82.104	3	1.852E-11	44280	160513_QHF_FH_JSI12Kac_6	124.46	108.34			1.24	1.329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.24	1.329	NaN	1	0	Median	56122000	24262000	31860000	0	0	0	0	0	0	0	0	0	56122000	24262000	31860000	7163	2175	6769	44349	60305	60305			1	
DFGNYLFNFASAATK	1	Unmodified	1664.7835	0.78347187	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	6.42	1	4							2	1	3	2	1	99.736	97.511	2	5.2416E-52	87545	160511_QHF_FH_JSI12i_2	220.31	196.32			1.1046	1.0989	22.158	7	2	Median	1.6801	1.4319	NaN	1	1	Median	0.88902	1.0989	19.871	3	1	Plateau	1.1281	1.092	8.5641	2	0	Median	1.1245	1.2655	NaN	1	0	Median	1459900000	677440000	782410000	206670000	89997000	116670000	492980000	262510000	230470000	421150000	167660000	253490000	339060000	157280000	181780000	7164	3961	6770	44350;44351;44352;44353;44354;44355;44356	60306;60307;60308;60309;60310;60311;60312;60313;60314	60307			9	
DFGNYLFNFASAATKK	2	Unmodified	1792.8784	0.87843489	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.82	100.73	3	7.9118E-16	83370	160511_QHF_FH_JSI10i_3	162.59	145.37			0.99077	1.1288	55.102	4	1	Median	2.558	2.0688	NaN	1	0	Median	0.95115	1.0932	NaN	1	0	Median	0.60176	0.53906	NaN	1	1	Median	1.032	1.1656	NaN	1	0	Median	195530000	109520000	86017000	25376000	11362000	14015000	50479000	28042000	22436000	48126000	35190000	12936000	71554000	34924000	36630000	7165	3961	6771	44357;44358;44359;44360	60315;60316;60317;60318;60319;60320	60317			6	
DFGSAAVSLQVAAPYSK	1	Unmodified	1709.8625	0.86245047	3008	Q5ZPR3	CD276	CD276 antigen	yes	no	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		79.399	78.532	2	2.1638E-32	71450	160511_QHF_FH_JSI11i_1	147.26	131.12			0.9595	0.78051	24.423	2	2	Median	0.9595	0.78051	24.423	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35251000	20244000	15006000	35251000	20244000	15006000	0	0	0	0	0	0	0	0	0	7166	3008	6772	44361;44362;44363	60321;60322;60323	60321			3	
DFGSFDK	1	Unmodified	814.34973	0.34973373	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	40.163	39.551	2	0.014083	35851	160511_QHF_FH_JSI12i_1	67.981	51.054			0.83573	0.87814	151.32	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83573	0.87814	151.32	2	2	Median	267050000	147770000	119280000	0	0	0	0	0	0	0	0	0	267050000	147770000	119280000	7167	807	6773	44364;44365	60324;60325	60324			2	
DFGSFDKFK	2	Acetyl (K)	1131.5237	0.52367535	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	14.3	0.471							2	1		1	1		1	79.73	69.193	2	0.0036999	35606	160513_QHF_FH_JSI9Kac_5	75.378	48.994			0.6559	0.76484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6559	0.76484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15010000	6612300	8397700	0	0	0	11098000	6612300	4485200	0	0	0	3912500	0	3912500	7168	807	6774	44366;44367;44368	60326;60327;60328	60326	443		3	
DFGSIFSTLLPGANAMLAPPEGQTVLDGLEFK	1	Unmodified	3334.6795	0.67953065	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		103.83	103.73	3	3.8904E-05	91497	160511_QHF_FH_JSI11i_2	48.088	45.765			0.76079	0.7436	11.221	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76079	0.7436	11.221	2	2	Median	NaN	NaN	NaN	0	0	Median	21257000	12037000	9220300	0	0	0	0	0	0	21257000	12037000	9220300	0	0	0	7169	679	6775	44369;44370	60329;60330	60330			2	
DFHILFVPR	0	Unmodified	1142.6237	0.62366417	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	3	3	82.418	76.971	2;3	2.1105E-05	39899	160513_QHF_FH_JSI9Kac_6	98.033	75.392			0.95838	0.92246	26.949	10	2	Median	1.1003	0.94524	6.9678	2	0	Median	0.81522	0.96676	16.996	2	0	Median	1.0066	0.94569	32.933	3	1	Median	0.66867	0.70422	35.317	3	1	Median	603780000	299990000	303790000	91371000	45909000	45462000	138780000	72069000	66711000	227720000	97518000	130210000	145900000	84490000	61413000	7170	3972	6776	44371;44372;44373;44374;44375;44376;44377;44378;44379;44380	60331;60332;60333;60334;60335;60336;60337;60338;60339;60340;60341;60342;60343;60344	60338			13	
DFHKDEVR	1	Acetyl (K)	1086.5094	0.50942227	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			32.476	23.04	2	0.049752	13852	160513_QHF_FH_JSI10Kac_4	48.283	30.248			0.73499	0.83125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73499	0.83125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2597600	1547200	1050400	0	0	0	2597600	1547200	1050400	0	0	0	0	0	0	7171	1693	6777	44381	60345	60345			1	
DFHLIQANK	1	Unmodified	1084.5665	0.56654322	3496	Q8N108	MIER1	Mesoderm induction early response protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	43.632	43.554	2;3	0.0001766	38380	160511_QHF_FH_JSI11i_3	104.37	82.129			0.27405	0.26868	30.376	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35964	0.32656	39.896	2	2	Median	0.27124	0.26868	NaN	1	1	Median	126170000	91680000	34494000	0	0	0	0	0	0	83050000	59060000	23990000	43123000	32619000	10504000	7172	3496	6778	44382;44383;44384	60346;60347;60348	60347			3	
DFHQLLLNPPK	1	Unmodified	1320.719	0.71902112	487	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.248	68.649	3	0.05232	60061	160511_QHF_FH_JSI11i_2	24.696	16.591			0.75395	0.73384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75395	0.73384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8444000	4617100	3826900	0	0	0	0	0	0	8444000	4617100	3826900	0	0	0	7173	487	6779	44385	60349	60349			1	
DFHYIVFGAPGTYNWK	1	Unmodified	1913.9101	0.91006937	1221	P23229	ITGA6	Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		86.257	78.922	3	0.00023978	44870	160513_QHF_FH_JSI10Kac_6	86.497	64.656			1.3009	1.2144	34.513	4	4	Median	1.2372	1.076	NaN	1	1	Median	0.89999	1.0546	55.515	2	2	Median	1.3736	1.3705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189440000	95535000	93900000	29893000	11912000	17981000	124750000	64019000	60732000	34791000	19604000	15187000	0	0	0	7174	1221	6780	44386;44387;44388;44389	60350;60351;60352;60353;60354	60353			5	
DFIATLEAEAFDDVVGETVGK	1	Unmodified	2225.074	0.073959389	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		103.19	103.19	3	4.6279E-10	92273	160511_QHF_FH_JSI11i_3	113.54	97.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8084500	0	8084500	0	0	0	0	0	0	8084500	0	8084500	0	0	0	7175	1298	6781	44390	60355	60355			1	
DFIATQGPLPNTLK	1	Unmodified	1513.814	0.81404372	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				73.97	73.052	2	0.01122	64986	160511_QHF_FH_JSI9i_1	57.019	48.487			2.6814	2.2611	NaN	1	1	Median	2.6814	2.2611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8355200	1794200	6561000	8355200	1794200	6561000	0	0	0	0	0	0	0	0	0	7176	2327	6782	44391	60356	60356			1	
DFIDLTLSK	1	Unmodified	1050.5597	0.55972651	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8	6		2					2			2	1		1	80.42	76.45	2	0.010325	37743	160513_QHF_FH_JSI12Kac_4	56.729	47.515			0.56575	0.64062	101.28	3	3	Median	1.0644	0.89909	140.53	2	2	Median	0.56575	0.64062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17941000	10087000	7854300	15328000	8341300	6986500	2613400	1745700	867730	0	0	0	0	0	0	7177	4559	6783	44392;44393;44394;44395	60357;60358;60359;60360	60360			4	
DFIDSLGLLHEQNMAK	1	Unmodified	1829.8982	0.89818405	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	87.701	87.024	2;3	5.2532E-52	76515	160511_QHF_FH_JSI11i_2	227.93	204.56			0.88148	0.90257	14.24	9	2	Median	1.0419	0.8923	0.81552	2	0	Median	0.71295	0.8813	26.059	2	0	Median	0.91024	0.92628	3.6669	2	0	Median	0.83936	0.93125	21.225	3	2	Median	1400400000	670360000	730040000	270140000	111130000	159020000	383500000	173710000	209790000	402730000	206430000	196310000	344020000	179090000	164930000	7178	3222	6784	44396;44397;44398;44399;44400;44401;44402;44403;44404	60361;60362;60363;60364;60365;60366;60367;60368;60369;60370;60371;60372;60373;60374;60375;60376;60377;60378	60373			18	
DFIDSLGLLHEQNMAK	1	Oxidation (M)	1845.8931	0.89309867	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			81.692	81.004	3	0.014158	72037	160511_QHF_FH_JSI10i_2	42.813	36.909			0.74551	0.90619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74551	0.90619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37104000	18859000	18245000	0	0	0	37104000	18859000	18245000	0	0	0	0	0	0	7179	3222	6784	44405	60379	60379		2224	0	
DFIFVSAR	0	Unmodified	953.49707	0.49706667	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	3.53			1				5	3	1		3	3	4	75.691	66.741	2	0.0020628	35195	160513_QHF_FH_JSI10Kac_4	93.374	53.271			0.93488	1.035	43.668	9	4	Median	NaN	NaN	NaN	0	0	Median	0.93488	1.1312	18.381	3	1	Median	0.98469	0.97454	68.618	3	2	Median	0.80326	0.88907	39.707	3	1	Median	141750000	67698000	74051000	0	0	0	51653000	19507000	32146000	43965000	21785000	22179000	46132000	26406000	19726000	7180	280	6785	44406;44407;44408;44409;44410;44411;44412;44413;44414;44415	60380;60381;60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392	60382			13	
DFIGVDSTGK	1	Unmodified	1037.5029	0.50293991	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	2	3	2	45.351	43.499	2	3.714E-05	39536	160511_QHF_FH_JSI12i_1	105.4	90.246			0.83194	0.8519	80.239	7	7	Linear	1.5626	1.2814	NaN	1	1	Median	0.94939	1.1009	129.98	2	2	Median	0.91179	0.88427	97.024	3	3	Plateau	2.0852	2.1208	NaN	1	1	Median	618520000	323520000	295000000	106890000	50746000	56149000	203470000	115260000	88206000	221100000	115030000	106070000	87053000	42477000	44576000	7181	4946	6786	44416;44417;44418;44419;44420;44421;44422;44423	60393;60394;60395;60396;60397;60398;60399;60400	60395			8	
DFIHTASISFLTPLR	0	Unmodified	1716.9199	0.91990577	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.7	6.13			1						2			2	1	93.376	87.113	3	4.1999E-05	43381	160513_QHF_FH_JSI12Kac_6	91.845	80.574			0.92484	0.89611	9.0339	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.007	0.96903	11.072	2	0	Median	0.98688	1.0477	NaN	1	0	Median	128330000	71357000	56970000	0	0	0	0	0	0	97883000	57079000	40804000	30444000	14278000	16166000	7182	4944	6787	44424;44425;44426	60401;60402;60403;60404;60405	60405			5	
DFIIFEAAPQETR	0	Unmodified	1535.762	0.76200815	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	87.136	86.773	2	5.3706E-06	78984	160511_QHF_FH_JSI10i_1	126.03	105.88			0.92223	0.99612	48.94	4	4	Median	NaN	NaN	NaN	0	0	Median	0.59573	0.69987	NaN	1	1	Median	1.7826	1.6991	NaN	1	1	Median	0.92223	0.95743	55.52	2	2	Median	149010000	79597000	69410000	0	0	0	47017000	28304000	18713000	38360000	16822000	21538000	63629000	34470000	29159000	7183	1912	6788	44427;44428;44429;44430	60406;60407;60408;60409	60409			4	
DFIILSCVR	0	Unmodified	1121.5903	0.59031513	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.35								6	1	1	1	2	3	84.238	73.787	2	0.00067385	36625	160513_QHF_FH_JSI10Kac_5	90.657	47.41			1.1721	1.1276	68.741	6	4	Median	1.2798	1.0895	NaN	1	0	Median	0.77942	0.92481	NaN	1	0	Median	1.3697	1.3396	129.63	2	2	Median	1.5969	1.7701	58.902	2	2	Median	32876000	14806000	18070000	3800400	1256800	2543700	5854100	3125300	2728800	14805000	7351300	7454200	8415500	3072500	5343100	7184	3904	6789	44431;44432;44433;44434;44435;44436;44437	60410;60411;60412;60413;60414;60415;60416;60417	60416			8	
DFIIQTGDPTGTGR	0	Unmodified	1476.7209	0.72087161	3755	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		59.15	58.734	2	0.00013101	53105	160511_QHF_FH_JSI10i_1	99.522	66.297			0.70376	0.82204	16.924	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.70376	0.82204	NaN	1	0	Median	0.83973	0.81422	23.922	2	2	Median	NaN	NaN	NaN	0	0	Median	141930000	75765000	66166000	0	0	0	51737000	28552000	23184000	90194000	47213000	42981000	0	0	0	7185	3755	6790	44438;44439;44440	60418;60419;60420;60421	60421			4	
DFIISRPTK	1	Unmodified	1075.6026	0.60259438	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		40.396	39.184	2;3	0.0061281	34266	160511_QHF_FH_JSI11i_3	51.445	40.735			0.96868	0.80288	64.128	5	5	Median	1.7872	1.453	88.8	2	2	Median	0.59604	0.6933	20.752	2	2	Median	1.9038	1.7863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	516680000	249670000	267010000	201210000	81188000	120020000	219360000	127200000	92164000	96106000	41287000	54819000	0	0	0	7186	5734	6791	44441;44442;44443;44444;44445	60422;60423;60424;60425;60426	60422			5	
DFIKTTVK	2	Acetyl (K)	992.55425	0.5542472	1444	P35659	DEK	Protein DEK	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		56.55	45.6	2	0.0082622	26270	160513_QHF_FH_JSI11Kac_4	80.438	57.419			0.057199	0.056079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.057199	0.056079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9265700	9163900	101760	0	0	0	0	0	0	9265700	9163900	101760	0	0	0	7187	1444	6792	44446	60427	60427	1425		1	
DFILFTK	1	Unmodified	882.48511	0.485105	5753	Q9Y6X9;Q86VD1	MORC2;MORC1	MORC family CW-type zinc finger protein 2;MORC family CW-type zinc finger protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.55		6						1		1	1	3	2	80.45	78.228	2	0.011928	68206	160511_QHF_FH_JSI12i_2	75.854	55.572			2.1884	2.0065	120.58	7	7	Median	2.3707	2.0065	NaN	1	1	Median	2.638	3.2229	NaN	1	1	Median	0.33723	0.3233	159.26	3	3	Median	0.86357	0.97256	132.07	2	2	Median	73686000	31029000	42658000	9800600	1926000	7874600	8621500	1245500	7376000	35185000	17431000	17754000	20079000	10426000	9653000	7188	5753	6793	44447;44448;44449;44450;44451;44452;44453	60428;60429;60430;60431;60432;60433;60434	60428			7	
DFILLTMR	0	Oxidation (M)	1023.5423	0.54230231	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	15	0								3		1	1		1	80.107	69.669	2	0.032994	34756	160513_QHF_FH_JSI10Kac_5	61.999	35.397			0.44911	0.36514	105.81	3	3	Median	0.44911	0.36514	NaN	1	1	Median	0.094096	0.11061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83178	0.91246	NaN	1	1	Median	8590000	5638900	2951200	2596100	1572600	1023600	2794800	2224300	570470	0	0	0	3199100	1842000	1357100	7189	3009	6794	44454;44455;44456	60435;60436;60437	60437			3	
DFILPISDVR	0	Unmodified	1173.6394	0.63937381	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	2	3	1	89.338	88.93	2	0.0007675	78241	160511_QHF_FH_JSI11i_2	77.677	55.827			0.86177	0.77137	31.23	4	4	Median	0.8117	0.6614	NaN	1	1	Median	0.4961	0.58291	NaN	1	1	Median	1.0641	1.0245	18.386	2	2	Median	NaN	NaN	NaN	0	0	Median	95021000	49827000	45193000	14524000	7652600	6871400	28194000	15621000	12573000	52302000	26553000	25749000	0	0	0	7190	3141	6795	44457;44458;44459;44460;44461;44462;44463;44464	60438;60439;60440;60441;60442;60443;60444;60445	60444			8	
DFINFISDK	1	Unmodified	1097.5393	0.53932542	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	2.98	8	8					1			4	5	4	4	81.006	79.729	2	4.1982E-06	70366	160511_QHF_FH_JSI11i_2	134.26	118.38			2.1567	2.3555	125.76	15	15	Median	5.441	4.5841	141.26	3	3	Plateau	1.9162	2.2547	111.13	4	4	Median	1.2789	1.2438	141.47	4	4	Median	0.78743	0.84774	156.95	4	4	Median	918370000	454560000	463800000	125470000	42502000	82965000	206920000	118020000	88896000	345280000	160830000	184450000	240700000	133210000	107490000	7191	4698	6796	44465;44466;44467;44468;44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481	60446;60447;60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462;60463;60464	60460			19	
DFISVLR	0	Unmodified	848.4756	0.47560295	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	69.481	68.586	2	0.0091276	60550	160511_QHF_FH_JSI9i_2	84.244	36.07			0.97791	1.0783	78.256	8	8	Median	1.1655	0.98859	109.27	2	2	Median	0.75731	0.92561	112.2	2	2	Median	0.98528	0.9835	109.38	2	2	Median	0.99767	1.0783	78.347	2	2	Median	342270000	164840000	177430000	66522000	29355000	37167000	72524000	40082000	32441000	116800000	53327000	63477000	86425000	42080000	44345000	7192	5577	6797	44482;44483;44484;44485;44486;44487;44488;44489	60465;60466;60467;60468;60469;60470;60471;60472	60468			8	
DFIYSLHSTER	0	Unmodified	1366.6517	0.65172941	3120	Q6PI78	TMEM65	Transmembrane protein 65	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	50.784	49.823	2	0.0021126	42661	160511_QHF_FH_JSI12i_2	63.283	35.954			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7193	3120	6798	44490;44491	60473;60474	60473			2	
DFKPGDLIFAK	2	Unmodified	1249.6707	0.67067394	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							2	3	3	4	76.732	76.031	2;3	4.6233E-05	66167	160511_QHF_FH_JSI12i_3	95.018	78.486			1.1342	1.2442	52.591	12	3	Median	2.0396	1.7545	79.582	2	1	Median	0.7144	0.8715	22.38	3	0	Plateau	1.4284	1.3522	4.6155	3	0	Plateau	0.89555	0.94364	80.133	4	2	Median	1325000000	643650000	681330000	67768000	28219000	39549000	111810000	70411000	41400000	379030000	168530000	210500000	766370000	376490000	389880000	7194	532	6799	44492;44493;44494;44495;44496;44497;44498;44499;44500;44501;44502;44503	60475;60476;60477;60478;60479;60480;60481;60482;60483;60484;60485;60486;60487;60488;60489;60490	60489			16	
DFKTVIIK	2	Acetyl (K)	1004.5906	0.59063271	444	O60749	SNX2	Sorting nexin-2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	76.128	65.558	2	0.031334	35115	160513_QHF_FH_JSI12Kac_4	61.962	25.567			0.33255	0.37015	34.744	2	2	Median	NaN	NaN	NaN	0	0	Median	0.24971	0.28952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44288	0.47323	NaN	1	1	Median	3146600	2311300	835310	0	0	0	1628800	1294300	334510	0	0	0	1517800	1017000	500790	7195	444	6800	44504;44505	60491;60492	60492			2	
DFLAGGIAAAISK	1	Unmodified	1232.6765	0.6764876	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.26	5.78	13	16	8				4	6	3	11	11	14	14	87.389	84.347	2;3	4.6707E-12	39812	160513_QHF_FH_JSI11Kac_5	122.7	97.924			0.86671	0.83729	84.732	48	40	Median	0.71806	0.59741	81.601	10	9	Median	0.60187	0.71232	89.327	11	9	Median	0.96225	0.9499	78.094	13	11	Median	0.96129	1.0049	95.1	14	11	Median	11640000000	6191300000	5449100000	2493300000	1212500000	1280800000	3013300000	1944900000	1068400000	3464400000	1664900000	1799500000	2669400000	1369000000	1300300000	7196	1014	6801	44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527;44528;44529;44530;44531;44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555	60493;60494;60495;60496;60497;60498;60499;60500;60501;60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535;60536;60537;60538;60539;60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554;60555;60556;60557;60558;60559;60560;60561;60562;60563;60564;60565;60566;60567;60568;60569;60570;60571;60572;60573;60574	60557			82	
DFLAGGVAAAISK	1	Unmodified	1218.6608	0.66083754	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.65	17	20	12			4	5	9	1	13	17	20	18	79.395	76.251	2;3	6.6728E-08	35232	160513_QHF_FH_JSI10Kac_5	128.28	98.473			0.61409	0.56834	97.814	61	58	Median	0.55627	0.48341	86.772	12	11	Median	0.73908	0.90043	97.752	16	14	Median	0.57578	0.56392	115.42	18	18	Median	0.4632	0.49756	91.873	15	15	Median	19934000000	10042000000	9892000000	3919400000	1821300000	2098100000	5533300000	2953000000	2580300000	5395100000	2611300000	2783900000	5085900000	2656100000	2429800000	7197	826	6802	44556;44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603;44604;44605;44606;44607;44608;44609;44610;44611;44612;44613;44614;44615;44616;44617;44618;44619;44620;44621;44622;44623	60575;60576;60577;60578;60579;60580;60581;60582;60583;60584;60585;60586;60587;60588;60589;60590;60591;60592;60593;60594;60595;60596;60597;60598;60599;60600;60601;60602;60603;60604;60605;60606;60607;60608;60609;60610;60611;60612;60613;60614;60615;60616;60617;60618;60619;60620;60621;60622;60623;60624;60625;60626;60627;60628;60629;60630;60631;60632;60633;60634;60635;60636;60637;60638;60639;60640;60641;60642;60643;60644;60645;60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656;60657;60658;60659;60660;60661;60662;60663;60664;60665;60666;60667	60663			93	
DFLAGGVAAAISKTAVAPIER	1	Unmodified	2056.1317	0.13168946	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			99.8	99.575	3	1.2325E-05	80633	160511_QHF_FH_JSI9i_3	84.493	74.963			0.72975	0.7313	116.87	2	2	Median	1.9474	1.6711	NaN	1	1	Median	0.27346	0.32003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16693000	10283000	6409700	6964100	2472100	4492000	9728700	7811000	1917700	0	0	0	0	0	0	7198	826	6803	44624;44625	60668;60669	60669			2	
DFLAGGVAAAISKTAVAPIER	1	Acetyl (K)	2098.1423	0.14225415	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		95.794	85.593	3	7.3423E-08	43342	160513_QHF_FH_JSI11Kac_5	86.727	76.53			1.0255	0.98023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0255	0.98023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2191800	1215600	976240	0	0	0	0	0	0	2191800	1215600	976240	0	0	0	7199	826	6803	44626	60670;60671	60671	475		2	
DFLAGGVAAAVSK	1	Unmodified	1204.6452	0.64518747	1013	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.79	5.7	9		1			1	3				7	4	3	73.267	70.505	2	5.6957E-06	35064	160513_QHF_FH_JSI10Kac_4	110.08	80.99			0.36689	0.40173	127.13	12	12	Median	NaN	NaN	NaN	0	0	Median	0.46006	0.54079	97.095	6	6	Median	1.3038	1.2608	193.66	3	3	Plateau	1.4291	1.4589	164.69	3	3	Plateau	1144000000	596780000	547200000	0	0	0	489710000	256650000	233070000	337890000	163820000	174070000	316370000	176310000	140060000	7200	1013	6804	44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640	60672;60673;60674;60675;60676;60677;60678;60679;60680;60681;60682;60683;60684;60685	60679			14	
DFLDEHYDIPK	1	Unmodified	1390.6405	0.64049603	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	2	2	2	63.122	62.288	3	0.0004005	54272	160511_QHF_FH_JSI11i_2	74.76	66.247			0.80146	0.9739	67.811	7	5	Median	0.80146	0.66138	NaN	1	0	Median	0.51935	0.6132	65.423	2	1	Median	2.1023	2.063	14.428	2	2	Median	0.68669	0.74712	69.4	2	2	Median	209750000	107780000	101970000	26140000	13552000	12588000	48952000	28148000	20804000	90294000	40935000	49359000	44368000	25145000	19223000	7201	3639	6805	44641;44642;44643;44644;44645;44646;44647	60686;60687;60688;60689;60690;60691;60692	60691			7	
DFLDEYIFLAVGR	0	Unmodified	1556.7875	0.78749461	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	6.6		1							2		1	1	1	99.55	94.46	2	3.8335E-62	53786	160513_QHF_FH_JSI10Kac_6	208.6	170.31			1.0336	1.216	13.569	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0336	1.216	NaN	1	0	Median	0.91138	0.92763	NaN	1	1	Median	1.0313	1.0795	NaN	1	0	Median	488650000	234190000	254460000	0	0	0	244130000	110260000	133870000	135250000	66889000	68361000	109270000	57043000	52226000	7202	154	6806	44648;44649;44650	60693;60694;60695	60695			2	
DFLDSLGFSTR	0	Unmodified	1256.6037	0.60371659	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			87.68	87.157	2	0.0013463	77435	160511_QHF_FH_JSI10i_2	71.349	45.612			0.78413	0.83037	6.6779	2	0	Median	0.99394	0.87052	NaN	1	0	Median	0.61861	0.79207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28559000	15378000	13181000	15298000	7181700	8116700	13261000	8196500	5064200	0	0	0	0	0	0	7203	815	6807	44651;44652	60696;60697;60698	60698			3	
DFLEAVNK	1	Unmodified	934.476	0.47599688	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.45	5.45	7	1				2	1			2	2	2	5	53.516	51.751	2	1.0695E-07	47067	160511_QHF_FH_JSI12i_1	161.6	126.4			1.9857	1.8013	104.6	9	9	Median	3.0513	2.532	56.176	2	2	Median	0.85779	1.017	122.6	2	2	Median	0.73388	0.71353	130.96	2	2	Median	2.7459	2.9185	132.05	3	3	Median	2090900000	1127400000	963430000	271420000	71871000	199550000	599840000	333210000	266630000	700710000	435130000	265580000	518880000	287210000	231670000	7204	1449	6808	44653;44654;44655;44656;44657;44658;44659;44660;44661;44662;44663	60699;60700;60701;60702;60703;60704;60705;60706;60707;60708;60709;60710;60711	60701			13	
DFLEHMAVVR	0	Unmodified	1215.607	0.60702783	5050	Q9NVU0	POLR3E	DNA-directed RNA polymerase III subunit RPC5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			60.895	60.028	3	0.017332	53121	160511_QHF_FH_JSI10i_2	34.231	31.102			0.54337	0.68908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54337	0.68908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13754000	8942500	4811900	0	0	0	13754000	8942500	4811900	0	0	0	0	0	0	7205	5050	6809	44664	60712	60712			1	
DFLESIRK	1	Unmodified	1006.5447	0.54474515	5513;3683	Q8TAG9;Q9Y2D4	EXOC6;EXOC6B	Exocyst complex component 6;Exocyst complex component 6B	no	no	0	0	0	1				By MS/MS	3	0			1										1	47.056	46.814	3	0.053682	40010	160511_QHF_FH_JSI12i_3	24.03	2.1798			0.27434	0.29418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27434	0.29418	NaN	1	1	Median	20335000	17091000	3243900	0	0	0	0	0	0	0	0	0	20335000	17091000	3243900	7206	3683;5513	6810	44665	60713	60713			1	
DFLFPHLR	0	Unmodified	1043.5553	0.55525025	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	72.288	71.482	3	0.00057078	61905	160511_QHF_FH_JSI12i_3	80.229	74.448			1.166	1.0774	21.441	4	1	Median	1.2406	1.0511	NaN	1	0	Median	1.1696	1.3994	NaN	1	1	Median	1.1624	1.1044	NaN	1	0	Median	0.82109	0.82957	NaN	1	0	Median	69814000	35983000	33830000	10264000	5117000	5146900	8043700	4252700	3791100	25258000	12680000	12578000	26248000	13933000	12314000	7207	4678	6811	44666;44667;44668;44669	60714;60715;60716;60717;60718;60719;60720	60720			7	
DFLHLFEK	1	Unmodified	1047.5389	0.53893149	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									1	3	82.722	82.583	2;3	0.0012714	71668	160511_QHF_FH_JSI12i_3	72.928	60.881			0.40397	0.42607	39.71	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27	0.25018	NaN	1	1	Median	0.46185	0.48139	17.264	2	2	Median	53703000	38977000	14726000	0	0	0	0	0	0	15042000	12828000	2213200	38661000	26148000	12513000	7208	17	6812	44670;44671;44672;44673	60721;60722;60723;60724	60723			4	
DFLIPIGK	1	Unmodified	901.5273	0.52730417	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	5.56	8	8	3				2	4		7	6	6	6	82.473	79.406	2	0.0013874	71515	160511_QHF_FH_JSI11i_2	105.39	32.352			1.3779	1.3734	73.893	25	24	Median	1.8509	1.5124	68.572	7	7	Median	0.66694	0.77947	65.216	6	6	Median	1.5964	1.5491	77.018	6	6	Median	1.7881	1.9771	91.027	6	5	Median	2257200000	1197900000	1059300000	438700000	218880000	219820000	610010000	383050000	226960000	752180000	361700000	390480000	456300000	234250000	222050000	7209	990	6813	44674;44675;44676;44677;44678;44679;44680;44681;44682;44683;44684;44685;44686;44687;44688;44689;44690;44691;44692;44693;44694;44695;44696;44697;44698	60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735;60736;60737;60738;60739;60740;60741;60742;60743;60744;60745;60746;60747;60748;60749;60750;60751;60752;60753;60754;60755;60756;60757;60758;60759;60760;60761;60762;60763	60754			39	
DFLITQMTGK	1	Unmodified	1152.5849	0.5848954	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			72.367	71.594	2	0.0024121	63645	160511_QHF_FH_JSI10i_2	63.184	46.088			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7210	4811	6814	44699	60764	60764			1	
DFLKESSK	2	Acetyl (K)	994.49713	0.49712625	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		44.178	34.921	2	0.042563	19728	160513_QHF_FH_JSI11Kac_3	57.96	33.141			0.1437	0.15167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1437	0.15167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	919960	834650	85307	0	0	0	0	0	0	919960	834650	85307	0	0	0	7211	2795	6815	44700	60765	60765			1	
DFLKGNIK	2	Acetyl (K)	975.53893	0.53893149	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		61.841	50.791	2	0.0088256	28777	160513_QHF_FH_JSI11Kac_4	79.469	53.575			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3343700	3343700	0	0	0	0	0	0	0	3343700	3343700	0	0	0	0	7212	1355	6816	44701	60766	60766	1290		1	
DFLLKPELLR	1	Unmodified	1242.7336	0.73360855	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	4.3		9	14						3	7	5	7	7	80.336	78.663	2;3	1.5305E-05	69099	160511_QHF_FH_JSI12i_3	123.75	92.445			0.88813	0.91492	72.535	26	19	Median	0.77804	0.66114	69.006	7	5	Median	1.3194	1.5133	65.857	5	4	Median	0.9011	0.89428	64.208	7	5	Median	0.81839	0.93603	90.054	7	5	Median	12490000000	6278400000	6211300000	924480000	442630000	481850000	1857400000	1030900000	826500000	4631000000	2301200000	2329800000	5076900000	2503700000	2573200000	7213	2474;97	6817	44702;44703;44704;44705;44706;44707;44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727	60767;60768;60769;60770;60771;60772;60773;60774;60775;60776;60777;60778;60779;60780;60781;60782;60783;60784;60785;60786;60787;60788;60789;60790;60791;60792;60793;60794;60795;60796;60797;60798;60799;60800;60801;60802;60803;60804;60805;60806;60807;60808;60809;60810;60811;60812;60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823;60824;60825;60826;60827;60828;60829;60830;60831;60832	60828			66	
DFLLKPELLR	1	Acetyl (K)	1284.7442	0.74417324	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		92.121	81.684	2	0.00033365	42102	160513_QHF_FH_JSI11Kac_5	93.649	74.378			0.59596	0.60906	79.195	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0016	1.0663	NaN	1	0	Median	0.35461	0.3479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10471000	7925600	2545100	0	0	0	881510	586540	294970	9589100	7339000	2250100	0	0	0	7214	2474;97	6817	44728;44729	60833;60834;60835	60834	63		2	
DFLLNYPFSTSVK	1	Unmodified	1529.7766	0.77659558	643	O95084	PRSS23	Serine protease 23	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								1		1	3	97.016	96.751	2	1.1216E-09	83199	160511_QHF_FH_JSI12i_2	111.63	92.85			0.82765	0.80323	22.898	3	2	Median	0.72561	0.61262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82765	0.80323	NaN	1	1	Median	0.90684	0.96582	NaN	1	0	Median	62650000	33830000	28820000	22192000	11722000	10470000	0	0	0	16307000	8831800	7475500	24151000	13277000	10874000	7215	643	6818	44730;44731;44732;44733;44734	60836;60837;60838;60839;60840	60838			5	
DFLLQQTMLR	0	Unmodified	1263.6645	0.66454271	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.32	6	4	3				4	5		4	6	5	7	82.621	78.022	2	1.0364E-33	71954	160511_QHF_FH_JSI9i_2	200.54	185.39			1.049	1.1273	57.03	22	14	Median	1.77	1.462	36.919	4	2	Median	0.95919	1.148	53.371	6	4	Median	0.9467	0.93226	80.066	5	3	Median	0.81634	0.91817	60.59	7	5	Median	3037000000	1536500000	1500500000	486290000	219690000	266590000	898960000	419710000	479240000	1067100000	548320000	518750000	584730000	348760000	235960000	7216	2221	6819	44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750;44751;44752;44753;44754;44755;44756	60841;60842;60843;60844;60845;60846;60847;60848;60849;60850;60851;60852;60853;60854;60855;60856;60857;60858;60859;60860;60861;60862;60863;60864;60865;60866;60867;60868;60869;60870;60871;60872	60858			32	
DFLLQQTMLR	0	Oxidation (M)	1279.6595	0.65945733	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	3.48		1					6	5		1	2	5	4	74.855	65.525	2	0.00014507	32236	160513_QHF_FH_JSI12Kac_5	90.629	50.584			0.34419	0.84485	47.162	8	4	Linear	0.89614	0.7615	NaN	1	1	Median	0.7245	0.86287	66.092	2	1	Median	0.75887	0.76078	45.33	2	1	Median	0.7765	0.84024	56.041	3	1	Plateau	61780000	35128000	26653000	6845700	2898600	3947200	14483000	8619300	5864100	23297000	15457000	7840400	17154000	8153400	9000800	7217	2221	6819	44757;44758;44759;44760;44761;44762;44763;44764;44765;44766;44767;44768	60873;60874;60875;60876;60877;60878;60879;60880;60881;60882;60883;60884;60885	60884		1847	11	
DFLLQQTMLRVK	1	Unmodified	1490.8279	0.82791964	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	80.033	79.792	3	0.0010209	69272	160511_QHF_FH_JSI12i_3	67.519	57.74			0.19876	0.19617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19876	0.19617	NaN	1	1	Median	30364000	26569000	3795100	0	0	0	0	0	0	0	0	0	30364000	26569000	3795100	7218	2221	6820	44769	60886	60886			1	
DFLLSLK	1	Unmodified	834.48511	0.485105	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	3	3	1	77.529	76.876	2	0.014343	67347	160511_QHF_FH_JSI11i_2	67.032	8.0509			1.8378	1.8343	34.516	8	7	Median	1.9976	1.7654	NaN	1	1	Median	1.7504	2.1384	30.462	3	3	Median	1.9733	1.906	36.845	3	3	Median	0.95952	1.0565	NaN	1	0	Median	236950000	104030000	132920000	31032000	13232000	17799000	59616000	24486000	35129000	71035000	28855000	42180000	75266000	37459000	37808000	7219	3328	6821	44770;44771;44772;44773;44774;44775;44776;44777	60887;60888;60889;60890;60891;60892;60893;60894;60895	60893			9	
DFLLTAR	0	Unmodified	834.45995	0.45995289	2056	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.83	6	8	5				3	5		5	7	8	7	57.817	54.082	2	3.3639E-05	28175	160513_QHF_FH_JSI9Kac_5	128.48	20.74			0.75254	0.8315	153.73	27	16	Median	1.0944	0.9197	77.635	5	4	Median	0.76282	0.9015	177.51	7	4	Median	0.73577	0.70729	210.49	8	4	Median	0.45757	0.49794	107.4	7	4	Median	14391000000	8272200000	6118800000	2624900000	1378200000	1246700000	2618700000	1650200000	968540000	4736800000	2978300000	1758500000	4410600000	2265500000	2145100000	7220	2056	6822	44778;44779;44780;44781;44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804	60896;60897;60898;60899;60900;60901;60902;60903;60904;60905;60906;60907;60908;60909;60910;60911;60912;60913;60914;60915;60916;60917;60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928;60929;60930;60931;60932;60933;60934;60935;60936;60937	60910			42	
DFLMLAQTHSK	1	Unmodified	1289.6438	0.64380726	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	6.19		11							4	4	5	3	3	62.415	59.836	2;3	2.7331E-09	52006	160511_QHF_FH_JSI11i_2	126.29	107.19			1.1646	1.1895	109.6	10	10	Median	2.2411	1.938	141.33	3	3	Plateau	1.7219	2.1146	48.63	2	2	Median	1.7673	1.7968	26.3	2	2	Median	0.20374	0.21984	82.539	3	3	Median	593410000	206870000	386540000	89633000	33811000	55822000	147440000	51574000	95869000	278210000	69238000	208970000	78126000	52248000	25879000	7221	1201	6823	44805;44806;44807;44808;44809;44810;44811;44812;44813;44814;44815;44816;44817;44818;44819	60938;60939;60940;60941;60942;60943;60944;60945;60946;60947;60948;60949;60950;60951;60952	60945			15	
DFLPKEYVK	2	Acetyl (K)	1179.6176	0.61757574	5616	Q9Y490	TLN1	Talin-1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	76.828	66.254	2	0.056896	35413	160513_QHF_FH_JSI12Kac_4	49.813	30.542			0.4005	0.46419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4005	0.46419	NaN	1	1	Median	1029200	662760	366400	0	0	0	0	0	0	0	0	0	1029200	662760	366400	7222	5616	6824	44820	60953	60953			1	
DFLPLYFGWFLTK	1	Unmodified	1645.8545	0.85445197	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	3.73			1	1					10	2	3	5	2	101.64	94.123	2;3	8.906E-17	50686	160513_QHF_FH_JSI12Kac_6	171.92	149.73			0.67178	0.66574	149.83	10	6	Median	0.61764	0.52869	35.176	2	0	Median	1.2748	1.515	51.559	3	2	Median	0.59322	0.57669	236.86	4	4	Median	0.33185	0.34778	NaN	1	0	Median	6796100000	3759700000	3036400000	1963300000	1108000000	855260000	1713900000	874280000	839580000	1889900000	715550000	1174300000	1229100000	1061900000	167210000	7223	933	6825	44821;44822;44823;44824;44825;44826;44827;44828;44829;44830;44831;44832	60954;60955;60956;60957;60958;60959;60960;60961;60962;60963;60964;60965;60966;60967;60968	60964			15	
DFLPVDPATSNGR	0	Unmodified	1387.6732	0.67319314	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.177	62.109	2	0.043961	55163	160511_QHF_FH_JSI9i_1	38.021	19.709			2.3711	1.9727	NaN	1	0	Median	2.3711	1.9727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44951000	14039000	30912000	44951000	14039000	30912000	0	0	0	0	0	0	0	0	0	7224	971	6826	44833	60969	60969			1	
DFLQGSSCIAGIYNETTK	1	Unmodified	2002.9306	0.93060639	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	82.59	82.243	2	6.2611E-11	74728	160511_QHF_FH_JSI10i_1	147.68	127.59			0.88974	0.95393	52.291	4	4	Median	NaN	NaN	NaN	0	0	Median	0.70086	0.81135	NaN	1	1	Median	0.86922	0.84338	86.759	2	2	Median	1.1295	1.1216	NaN	1	1	Median	63967000	29153000	34814000	0	0	0	14357000	8180300	6176800	33770000	16642000	17129000	15840000	4331300	11509000	7225	1085	6827	44834;44835;44836;44837	60970;60971;60972;60973	60973			4	
DFLQSDEAR	0	Unmodified	1079.4884	0.48835248	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				33.296	32.032	2	0.022401	27933	160511_QHF_FH_JSI9i_1	49.715	40.852			1.3836	1.1305	NaN	1	1	Median	1.3836	1.1305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21926000	8385400	13540000	21926000	8385400	13540000	0	0	0	0	0	0	0	0	0	7226	3325	6828	44838	60974	60974			1	
DFLRPFEHIMK	1	Unmodified	1431.7333	0.73329097	5718;5719	Q9Y6D5;Q9Y6D6	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		81.334	80.692	3	0.024133	68394	160511_QHF_FH_JSI10i_3	38.875	27.082			1.1546	1.2273	55.974	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69758	0.82612	NaN	1	1	Median	1.911	1.8232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33483000	14206000	19277000	0	0	0	15358000	8900600	6457600	18125000	5305700	12819000	0	0	0	7227	5718;5719	6829	44839;44840	60975;60976	60976			2	
DFLSGIQK	1	Unmodified	906.48108	0.48108226	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.2	6.37	3						2			1	1	2	1	54.24	53.493	2	0.01054	47545	160511_QHF_FH_JSI9i_1	63.565	42.265			0.9068	0.91373	3.9114	3	1	Median	1.0715	0.91373	NaN	1	1	Median	0.74249	0.86443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9068	0.93222	NaN	1	0	Median	118200000	65616000	52586000	31617000	14041000	17576000	39572000	21411000	18161000	0	0	0	47012000	30164000	16848000	7228	280	6830	44841;44842;44843;44844;44845	60977;60978;60979;60980	60980			4	
DFLSVMLEK	1	Unmodified	1080.5525	0.55253264	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.71	1	7	5					5		6	4	4	4	92.573	89.589	2	3.0134E-06	81852	160511_QHF_FH_JSI11i_2	138.1	127.63			1.0238	1.0468	65.632	16	13	Median	1.5486	1.3053	80.705	6	6	Median	0.53297	0.64665	76.268	3	3	Median	1.3943	1.3391	73.196	4	3	Median	1.0636	1.1997	28.045	3	1	Median	801440000	364640000	436800000	207820000	80920000	126900000	178870000	94773000	84101000	238900000	112000000	126900000	175850000	76948000	98901000	7229	5526	6831	44846;44847;44848;44849;44850;44851;44852;44853;44854;44855;44856;44857;44858;44859;44860;44861;44862;44863	60981;60982;60983;60984;60985;60986;60987;60988;60989;60990;60991;60992;60993;60994;60995;60996;60997;60998;60999;61000;61001;61002;61003;61004;61005;61006;61007;61008	60997			28	
DFLTGMCLFLQSLR	0	Unmodified	1699.8426	0.84258343	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	100.54	92.424	2	1.1215E-114	55794	160513_QHF_FH_JSI10Kac_6	272.32	231.82			0.87298	1.0194	73.339	3	2	Median	2.4402	2.076	NaN	1	1	Median	0.87298	1.0194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45989	0.47897	NaN	1	1	Median	159810000	80438000	79371000	18238000	2741500	15496000	105720000	61543000	44178000	0	0	0	35849000	16153000	19696000	7230	5672	6832	44864;44865;44866;44867	61009;61010;61011;61012;61013	61013			5	
DFLTHVSAR	0	Unmodified	1044.5352	0.53524309	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	35.892	35.241	2;3	0.00018151	30692	160511_QHF_FH_JSI11i_3	66.056	51.758			0.76578	0.92045	32.518	7	1	Median	1.0486	0.91028	10.039	2	0	Median	0.76001	0.92178	0.20474	2	0	Median	0.92346	0.8952	75.224	2	0	Median	0.67817	0.70137	NaN	1	1	Median	414570000	215880000	198690000	71913000	32508000	39405000	94679000	48289000	46390000	188460000	100670000	87785000	59525000	34415000	25110000	7231	241	6833	44868;44869;44870;44871;44872;44873;44874;44875	61014;61015;61016;61017;61018;61019;61020	61015			7	
DFLTPPLLSVR	0	Unmodified	1256.7129	0.71287311	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		4	1					1		2	1	2	1	96.335	94.396	2	4.0265E-06	86053	160511_QHF_FH_JSI10i_2	136.99	134.38			0.91365	0.98252	34.098	6	2	Median	1.4555	1.2407	7.916	2	1	Median	0.79402	0.97606	NaN	1	0	Median	0.71943	0.69834	49.217	2	1	Median	0.84564	0.96771	NaN	1	0	Median	323580000	168910000	154670000	70245000	28399000	41846000	82674000	43204000	39470000	105140000	60199000	44943000	65516000	37108000	28408000	7232	726	6834	44876;44877;44878;44879;44880;44881	61021;61022;61023;61024;61025;61026;61027;61028;61029;61030	61029			10	
DFLVGQDR	0	Unmodified	948.46649	0.46649483	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.87	5						2			1	1	2	3	42.847	39.426	2	0.0017354	36123	160511_QHF_FH_JSI12i_1	98.629	60.391			0.5092	0.54768	104.09	7	5	Median	7.9879	6.5691	NaN	1	0	Median	0.47345	0.54768	NaN	1	1	Median	0.43745	0.43141	21.113	2	2	Median	1.0975	1.1881	74.112	3	2	Median	1102300000	405590000	696680000	463160000	47451000	415710000	165920000	100930000	64985000	184270000	108080000	76191000	288920000	149130000	139800000	7233	2568	6835	44882;44883;44884;44885;44886;44887;44888	61031;61032;61033;61034;61035;61036;61037	61033			7	
DFLVQIK	1	Unmodified	861.496	0.49600404	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	2	2	2	65.767	65.088	2	0.010844	57262	160511_QHF_FH_JSI9i_2	79.454	45.715			0.41485	0.43702	26.563	7	7	Median	0.4024	0.33759	35.988	2	2	Median	0.43948	0.51715	5.8753	2	2	Median	0.4943	0.50351	20.029	2	2	Median	0.38228	0.37883	NaN	1	1	Median	158410000	105520000	52883000	30368000	20370000	9997700	47402000	32886000	14516000	65064000	41829000	23235000	15574000	10439000	5135000	7234	231	6836	44889;44890;44891;44892;44893;44894;44895;44896	61038;61039;61040;61041;61042;61043;61044;61045	61042			8	
DFLWFFSK	1	Unmodified	1088.5331	0.53311783	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.62		3	1						7	1	3	3	4	98.613	92.756	2	0.00023169	47902	160513_QHF_FH_JSI12Kac_6	131.06	71.857			0.59838	0.61667	110.69	10	7	Median	0.32835	0.28316	NaN	1	1	Median	0.97994	1.1966	148.03	3	2	Median	0.64103	0.63914	101.03	3	2	Median	0.55857	0.59499	133.61	3	2	Median	1123300000	633600000	489660000	107080000	83500000	23584000	237220000	146510000	90712000	420350000	206170000	214180000	358610000	197420000	161190000	7235	1439	6837	44897;44898;44899;44900;44901;44902;44903;44904;44905;44906;44907	61046;61047;61048;61049;61050;61051;61052;61053;61054;61055;61056	61053			11	
DFLYSYFK	1	Unmodified	1081.512	0.51204804	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.58		7	1				1	4	3	4	5	4	3	82.535	77.379	2	0.00081956	70026	160511_QHF_FH_JSI12i_2	97.798	48.44			0.89317	0.93722	71.254	15	12	Median	1.3178	1.1096	54.733	4	3	Median	0.57419	0.6953	76.233	4	3	Median	0.9369	0.92733	100.2	4	4	Median	0.83788	0.93722	75.677	3	2	Median	745840000	383790000	362050000	166440000	70632000	95809000	135790000	69856000	65935000	308500000	171710000	136790000	135110000	71592000	63516000	7236	943	6838	44908;44909;44910;44911;44912;44913;44914;44915;44916;44917;44918;44919;44920;44921;44922;44923	61057;61058;61059;61060;61061;61062;61063;61064;61065;61066;61067;61068;61069;61070;61071;61072;61073;61074;61075	61058			19	
DFMFQPLDGLK	1	Unmodified	1309.6377	0.63765925	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.613	96.628	2	0.0045529	87611	160511_QHF_FH_JSI10i_1	64.297	54.516			1.0258	1.0962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0258	1.0962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8927100	2936800	5990300	0	0	0	8927100	2936800	5990300	0	0	0	0	0	0	7237	2667	6839	44924	61076	61076			1	
DFMIQGGDFTR	0	Unmodified	1285.5761	0.57612163	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.25	4	4	2				4	3		3	6	4	4	70.553	65.659	2	3.3157E-23	60433	160511_QHF_FH_JSI10i_1	175.73	159.53			0.89665	0.94017	37.861	17	5	Median	0.98251	0.89296	11.712	3	0	Plateau	0.75788	0.90621	27.82	6	3	Median	1.1198	1.1309	63.699	4	1	Median	1.2187	1.3258	46.812	4	1	Linear	11554000000	5667700000	5886500000	2386600000	1139900000	1246700000	2856600000	1680000000	1176600000	3778200000	1530400000	2247800000	2532800000	1317400000	1215400000	7238	1224	6840	44925;44926;44927;44928;44929;44930;44931;44932;44933;44934;44935;44936;44937;44938;44939;44940;44941	61077;61078;61079;61080;61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092;61093;61094;61095;61096;61097;61098;61099;61100;61101;61102	61087			26	
DFMIQGGDFTR	0	Oxidation (M)	1301.571	0.57103625	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	1	3	59.05	58.16	2	4.0172E-07	52606	160511_QHF_FH_JSI10i_1	120.99	109.5			1.0068	0.93288	30.222	8	3	Median	1.1188	0.93288	0.077825	2	0	Median	0.7309	0.87467	28.699	2	1	Median	1.1184	1.1054	NaN	1	0	Median	0.8198	0.84886	49.911	3	2	Median	836790000	433320000	403470000	158870000	73445000	85426000	220450000	121110000	99338000	197430000	101760000	95671000	260040000	137000000	123040000	7239	1224	6840	44942;44943;44944;44945;44946;44947;44948;44949;44950	61103;61104;61105;61106;61107;61108;61109;61110;61111	61106		855	9	
DFMIQGGDFTRGDGTGGK	1	Unmodified	1857.8316	0.83156105	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.65	9	8	4				2	5		6	6	8	8	61.209	58.614	2;3	6.1117E-11	51019	160511_QHF_FH_JSI11i_2	162.32	156.08			1.1249	1.1129	42.345	26	4	Median	1.1587	0.94964	15.559	5	0	Median	0.77361	0.94926	16.583	5	0	Median	1.2307	1.2144	60.303	8	1	Median	1.2147	1.271	32.785	8	3	Median	9697000000	4320100000	5376900000	1500800000	654140000	846660000	2116300000	951480000	1164800000	3002700000	1283600000	1719100000	3077300000	1430900000	1646400000	7240	1224	6841	44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961;44962;44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975;44976;44977;44978	61112;61113;61114;61115;61116;61117;61118;61119;61120;61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134;61135;61136;61137;61138;61139;61140;61141;61142;61143;61144;61145;61146;61147;61148;61149;61150;61151;61152;61153;61154;61155;61156;61157;61158;61159;61160;61161;61162;61163;61164;61165;61166;61167;61168;61169;61170;61171;61172;61173;61174;61175;61176;61177	61156			66	
DFMIQGGDFTRGDGTGGK	1	Oxidation (M)	1873.8265	0.82647567	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.34			2				1	4		1	1	1	4	58.85	51.116	2;3	9.7462E-05	44320	160511_QHF_FH_JSI12i_3	76.155	71.686			1.0628	1.1198	26.974	7	1	Median	1.5247	1.2722	NaN	1	0	Median	0.82946	0.97591	NaN	1	0	Median	1.1678	1.1377	NaN	1	0	Median	0.84391	0.89066	30.835	4	1	Median	282310000	145480000	136840000	2849800	1290400	1559500	2589700	1582200	1007500	6188900	2927500	3261500	270690000	139680000	131010000	7241	1224	6841	44979;44980;44981;44982;44983;44984;44985	61178;61179;61180;61181;61182;61183;61184;61185	61183		855	8	
DFMIQGGDFVNGDGTGVASIYR	0	Unmodified	2318.0637	0.063745829	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		95.286	95.139	2	1.7734E-13	86244	160511_QHF_FH_JSI10i_1	151.8	142.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7242	335	6842	44986;44987	61186;61187	61187			2	
DFMIQGGDPTGTGR	0	Unmodified	1450.6511	0.65107749	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.178	51.506	2	6.6284E-10	46652	160511_QHF_FH_JSI11i_1	149.23	134.07			1.0205	1.1469	28.471	4	1	Linear	1.1275	0.93188	NaN	1	0	Median	0.48712	0.57145	NaN	1	1	Median	1.0983	1.0694	NaN	1	0	Median	0.94831	0.99932	NaN	1	0	Median	889360000	458260000	431090000	189870000	94756000	95117000	213320000	127140000	86180000	262960000	119860000	143100000	223210000	116510000	106700000	7243	5581	6843	44988;44989;44990;44991	61188;61189;61190;61191;61192;61193;61194	61189			7	
DFMIVALDLLSGLAEGLGGHVEQLVAR	0	Unmodified	2822.5001	0.50005015	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	106.26	96.821	3	1.2239E-29	53126	160513_QHF_FH_JSI12Kac_6	190.81	171.7			0.26388	0.28617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26388	0.28617	NaN	1	1	Median	11993000	10531000	1462600	0	0	0	0	0	0	0	0	0	11993000	10531000	1462600	7244	205	6844	44992	61195	61195			1	
DFMIVALDLLSGLAEGLGGNIEQLVAR	0	Unmodified	2813.4997	0.4997158	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	1.6					1				4	1	2	1	1	107.6	99.731	2;3	2.8474E-279	60329	160513_QHF_FH_JSI10Kac_6	379.24	335.24			0.26103	0.26738	95.243	4	3	Median	NaN	NaN	NaN	0	0	Median	0.30956	0.36816	145.58	2	1	Median	0.46196	0.44074	NaN	1	1	Median	0.14749	0.16221	NaN	1	1	Median	515300000	280620000	234680000	23444000	0	23444000	476280000	267090000	209190000	2097200	1568500	528680	13481000	11965000	1516200	7245	3914	6845	44993;44994;44995;44996;44997	61196;61197;61198;61199;61200;61201;61202;61203	61203			8	
DFMLITNK	1	Unmodified	980.5001	0.50010314	3762	Q8WUH1	CHURC1	Protein Churchill	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		66.371	65.636	2	0.0066612	57792	160511_QHF_FH_JSI9i_2	70.919	35.039			5.0796	4.7691	8.9184	2	2	Median	5.8956	5.0796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.3765	4.4777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32217000	8821200	23396000	11315000	1740900	9574300	0	0	0	20902000	7080300	13822000	0	0	0	7246	3762	6846	44998;44999	61204;61205	61204			2	
DFMVQGGDFSEGNGR	0	Unmodified	1614.6733	0.67326949	2408	Q13427	PPIG	Peptidyl-prolyl cis-trans isomerase G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	57.527	56.922	2	0.00021988	51531	160511_QHF_FH_JSI11i_1	103.88	90.872			1.6955	1.5171	34.575	5	3	Median	1.8718	1.5171	NaN	1	0	Median	1.6955	1.9746	NaN	1	1	Median	1.9749	1.9301	53.574	2	2	Median	1.114	1.1949	NaN	1	0	Median	207960000	76985000	130970000	42728000	13981000	28747000	41482000	15417000	26065000	79775000	26880000	52894000	43973000	20708000	23265000	7247	2408	6847	45000;45001;45002;45003;45004	61206;61207;61208;61209;61210;61211	61207			6	
DFMYVSQDPK	1	Unmodified	1228.5434	0.54342452	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	51.231	50.558	2	0.0021769	45355	160511_QHF_FH_JSI10i_1	74.376	63.225			0.85393	0.7944	92.483	8	8	Median	0.7708	0.63517	94.519	2	2	Median	0.85893	1.0053	108.34	2	2	Median	1.1651	1.1485	160.69	2	2	Median	0.98073	1.0081	96.584	2	2	Median	1154800000	591790000	563010000	276040000	154760000	121290000	276050000	149650000	126400000	274910000	118290000	156620000	327800000	169100000	158710000	7248	1848	6848	45005;45006;45007;45008;45009;45010;45011;45012	61212;61213;61214;61215;61216;61217;61218;61219	61216			8	
DFNDIRQDFLPWK	1	Unmodified	1692.826	0.82600539	606;4414	O94776;Q9BTC8	MTA2;MTA3	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	1	4	93.778	93.603	2;3	0.0001032	81188	160511_QHF_FH_JSI12i_3	98.942	86.966			1.0763	1.1369	31.917	6	3	Median	NaN	NaN	NaN	0	0	Median	1.0568	1.2923	NaN	1	0	Median	1.0962	1.0473	NaN	1	0	Median	1.0885	1.1284	40.235	4	3	Median	382100000	184470000	197630000	0	0	0	32674000	15379000	17295000	64817000	28776000	36041000	284600000	140310000	144290000	7249	606;4414	6849	45013;45014;45015;45016;45017;45018	61220;61221;61222;61223;61224;61225;61226;61227	61226			8	
DFNGDFR	0	Unmodified	869.36678	0.36678078	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.516	33.93	2	0.032543	30647	160511_QHF_FH_JSI12i_1	52.636	47.902			0.38511	0.40498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38511	0.40498	NaN	1	1	Median	40896000	24057000	16840000	0	0	0	0	0	0	0	0	0	40896000	24057000	16840000	7250	2675	6850	45019	61228	61228			1	
DFNHINVELSLLGK	1	Unmodified	1597.8464	0.84640648	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							4	3	2	2	91.268	90.6	2;3	8.247E-10	78023	160511_QHF_FH_JSI12i_2	106.17	96.221			0.99293	1.0729	26.887	8	4	Median	1.1199	0.95621	38.683	2	1	Median	0.92693	1.1109	29.12	3	2	Median	1.2231	1.2132	22.282	2	1	Median	0.80469	0.88698	NaN	1	0	Median	588560000	286600000	301960000	74890000	34668000	40222000	154450000	73625000	80820000	231720000	106400000	125320000	127510000	71908000	55597000	7251	1398	6851	45020;45021;45022;45023;45024;45025;45026;45027;45028;45029;45030	61229;61230;61231;61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243;61244;61245;61246;61247;61248	61233			20	
DFNHINVELSLLGKK	2	Unmodified	1725.9414	0.94136949	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	79.615	79.374	2;3;4	3.2284E-05	68905	160511_QHF_FH_JSI12i_3	107.07	100.91			2.1321	2.1791	29.97	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1321	2.1791	29.97	2	2	Median	122230000	57565000	64664000	0	0	0	0	0	0	0	0	0	122230000	57565000	64664000	7252	1398	6852	45031;45032;45033	61249;61250;61251	61250			3	
DFNLPEYDLNVEER	0	Unmodified	1751.8002	0.80024414	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			82.208	82.055	2	0.0042512	74567	160511_QHF_FH_JSI10i_1	63.473	54.469			0.98918	1.1659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98918	1.1659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15001000	8192900	6808100	0	0	0	15001000	8192900	6808100	0	0	0	0	0	0	7253	4226	6853	45034	61252	61252			1	
DFNMPLTISSLK	1	Unmodified	1364.701	0.70098779	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.57	0.495	3	4								2	2	2	1	93.141	92.715	2	2.6747E-07	84395	160511_QHF_FH_JSI11i_1	129.89	116.85			0.84752	0.84371	9.0103	7	2	Median	1.0201	0.85505	15.573	2	1	Median	0.69487	0.8407	4.7666	2	1	Median	0.90163	0.90195	12.744	2	0	Median	0.76938	0.84371	NaN	1	0	Median	563990000	319730000	244260000	105450000	52871000	52574000	158070000	93086000	64984000	239910000	140120000	99790000	60567000	33656000	26911000	7254	4108	6854	45035;45036;45037;45038;45039;45040;45041	61253;61254;61255;61256;61257;61258	61253			5	
DFNMYFYHYSK	1	Unmodified	1513.6336	0.63363651	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	76.393	67.939	2;3	2.1607E-10	36255	160513_QHF_FH_JSI9Kac_6	124.1	109.41			1.0347	1.0044	22.186	9	2	Median	1.2246	1.0603	34.082	3	2	Median	0.64447	0.74999	5.8053	2	0	Median	1.0751	1.0444	5.5125	2	0	Median	0.98438	1.0483	7.7885	2	0	Median	1179500000	609280000	570260000	325920000	137230000	188690000	456230000	299380000	156850000	163490000	72742000	90746000	233900000	99924000	133980000	7255	3429	6855	45042;45043;45044;45045;45046;45047;45048;45049;45050	61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273;61274	61265			16	
DFNMYFYHYSK	1	Oxidation (M)	1529.6286	0.62855113	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	70.787	62.17	2;3	1.1771E-05	32549	160513_QHF_FH_JSI12Kac_6	103.22	96.367			0.93756	0.8016	30.4	3	1	Median	0.93756	0.8016	NaN	1	1	Median	0.62245	0.73238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2356	1.2897	NaN	1	0	Median	93415000	52142000	41273000	20814000	13352000	7462000	36110000	21688000	14422000	0	0	0	36492000	17102000	19390000	7256	3429	6855	45051;45052;45053;45054	61275;61276;61277;61278;61279	61278		2259	5	
DFNVGDYIQAVLDR	0	Unmodified	1623.7893	0.78928553	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.58	102.58	2	0.0015539	91715	160511_QHF_FH_JSI11i_3	62.232	40.034			1.0188	0.9491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0188	0.9491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19953000	10110000	9843400	0	0	0	0	0	0	19953000	10110000	9843400	0	0	0	7257	855	6856	45055	61280	61280			1	
DFNVPLSISR	0	Unmodified	1146.6033	0.60332266	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	73.117	72.752	2	0.00020885	66034	160511_QHF_FH_JSI10i_1	94.309	84.721			0.93288	1.0185	6.6045	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.82152	0.96318	NaN	1	0	Median	1.1194	1.0826	NaN	1	1	Median	1.0593	1.077	NaN	1	0	Median	101930000	52198000	49730000	0	0	0	37936000	18739000	19197000	35218000	19675000	15542000	28775000	13784000	14991000	7258	4937	6857	45056;45057;45058	61281;61282;61283	61283			3	
DFPAVDSVLVK	1	Unmodified	1188.639	0.63903946	2946	Q5T447	HECTD3	E3 ubiquitin-protein ligase HECTD3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				83.953	83.113	2	0.0091324	74018	160511_QHF_FH_JSI9i_1	58.699	24.621			0.67003	0.54711	NaN	1	1	Median	0.67003	0.54711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16785000	9782100	7003100	16785000	9782100	7003100	0	0	0	0	0	0	0	0	0	7259	2946	6858	45059	61284	61284			1	
DFPELTMEVDGK	1	Unmodified	1379.6279	0.62788243	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	78.354	77.923	2	0.0047035	70841	160511_QHF_FH_JSI12i_1	54.259	37.588			1.5831	1.6158	14.047	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.488	1.463	NaN	1	0	Median	1.6841	1.7845	NaN	1	0	Median	78978000	24771000	54207000	0	0	0	0	0	0	41368000	12897000	28470000	37610000	11873000	25737000	7260	1479	6859	45060;45061	61285	61285			1	
DFPETNNILK	1	Unmodified	1189.5979	0.59790293	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.98	6					1	2			1	3	2	3	64.658	61.327	2	2.7159E-09	54558	160511_QHF_FH_JSI9i_1	127.46	109.43			0.77052	0.76238	47.795	7	4	Median	1.1041	0.91357	NaN	1	0	Median	0.54057	0.63122	NaN	1	1	Median	1.1407	1.0999	51.829	2	1	Median	1.153	1.2312	66.894	3	2	Plateau	2176500000	1022800000	1153700000	548460000	253480000	294980000	363560000	214770000	148800000	434970000	206150000	228820000	829490000	348360000	481130000	7261	1693	6860	45062;45063;45064;45065;45066;45067;45068;45069;45070	61286;61287;61288;61289;61290;61291;61292;61293;61294;61295;61296	61295			11	
DFPEYTFAIADEEDYAGEVK	1	Unmodified	2308.0059	0.0059394035	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	15									6	3	4	2	97.667	97.475	2;3	2.6366E-26	88376	160511_QHF_FH_JSI10i_1	208.47	190.76			1.0146	0.9808	12.455	13	6	Median	1.1251	0.91886	19.273	4	2	Median	0.70163	0.82577	11.373	3	2	Plateau	1.0337	0.99113	7.4094	4	2	Median	0.97173	1.011	8.0995	2	0	Median	610680000	294700000	315990000	72300000	33563000	38737000	227730000	126070000	101670000	149570000	65731000	83843000	161080000	69335000	91741000	7262	1034	6861	45071;45072;45073;45074;45075;45076;45077;45078;45079;45080;45081;45082;45083;45084;45085	61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312;61313;61314;61315;61316;61317;61318;61319;61320;61321;61322;61323;61324;61325;61326;61327;61328;61329;61330	61319			34	
DFPFTIR	0	Unmodified	894.45995	0.45995289	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	74.684	73.939	2	0.0040196	64730	160511_QHF_FH_JSI11i_2	100.74	79.195			1.0997	1.1168	10.041	5	0	Median	1.5001	1.2666	NaN	1	0	Median	0.89708	1.1087	NaN	1	0	Median	1.0997	1.1168	NaN	1	0	Median	1.0418	1.1242	16.678	2	0	Median	363050000	169470000	193580000	67242000	24072000	43170000	70325000	39059000	31266000	124860000	55949000	68915000	100620000	50389000	50229000	7263	3709	6862	45086;45087;45088;45089;45090	61331;61332;61333;61334;61335	61333			5	
DFPLNDLLSATELDK	1	Unmodified	1689.8461	0.8461317	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	102.21	102.09	2;3	1.4469E-29	92882	160511_QHF_FH_JSI10i_1	217.46	200.24			0.93074	0.96785	26.318	8	2	Median	0.86946	0.71107	44.388	2	0	Median	0.89685	1.045	NaN	1	0	Median	1.0195	1.0077	6.4958	2	0	Median	0.81829	0.82764	23.851	3	2	Plateau	743490000	382550000	360940000	120030000	58541000	61487000	169390000	97545000	71845000	177790000	90693000	87099000	276280000	135770000	140510000	7264	2517	6863	45091;45092;45093;45094;45095;45096;45097;45098	61336;61337;61338;61339;61340;61341;61342;61343	61341			7	
DFPLSGYVELR	0	Unmodified	1294.6558	0.65575216	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	2	1	88.467	88.079	2	0.00033949	77458	160511_QHF_FH_JSI11i_2	67.334	52.667			1.0552	1.0204	11.153	5	3	Median	1.1774	1.0116	NaN	1	1	Median	1.0552	1.2286	NaN	1	1	Median	1.0131	0.99919	2.9753	2	1	Median	1.1701	1.2262	NaN	1	0	Median	187760000	88619000	99140000	38062000	21181000	16881000	50558000	22604000	27954000	78017000	33327000	44690000	21121000	11507000	9614300	7265	534	6864	45099;45100;45101;45102;45103;45104	61344;61345;61346;61347;61348;61349	61349			6	
DFPPAAAQVAHQK	1	Unmodified	1378.6993	0.69934831	1732	P51397	DAP	Death-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.32	2.79	6	12					1			4	2	6	7	40.506	38.934	2;3	3.0207E-07	33988	160511_QHF_FH_JSI9i_2	97.565	89.92			0.9528	1.0078	18.138	14	5	Median	1.613	1.3362	6.9694	2	0	Median	0.83134	0.98704	17.729	2	1	Median	0.93561	0.95246	6.7268	3	0	Median	0.81627	0.91449	19.828	7	4	Median	833800000	415340000	418460000	60868000	23735000	37133000	109390000	57487000	51904000	297860000	151860000	146000000	365690000	182260000	183430000	7266	1732	6865	45105;45106;45107;45108;45109;45110;45111;45112;45113;45114;45115;45116;45117;45118;45119;45120;45121;45122;45123	61350;61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365;61366;61367;61368;61369;61370;61371	61362			20	
DFPPAAAQVAHQKPHASMDK	2	Acetyl (K);Oxidation (M)	2203.048	0.048036185	1732	P51397	DAP	Death-associated protein 1	yes	yes	1	0	1	1		By matching	By MS/MS	By MS/MS	15	0								4			1	2	1	55.916	45.205	3;4	0.0042278	24911	160513_QHF_FH_JSI11Kac_5	43.598	35.509			0.43169	0.45065	92.012	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2489	1.5223	NaN	1	0	Median	0.26456	0.25783	65.978	2	1	Median	0.44465	0.49401	NaN	1	0	Median	26384000	18196000	8187900	0	0	0	6717600	3288700	3428900	13686000	10971000	2715500	5980100	3936600	2043500	7267	1732	6866	45124;45125;45126;45127	61372;61373;61374	61373	1747	1418	3	
DFPPAAAQVAHQKPHASMDK	2	Acetyl (K)	2187.0531	0.053121563	1732	P51397	DAP	Death-associated protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15.2	0.433								3	1	1	1	1	1	61.523	51.164	3;4	0.0098191	26117	160513_QHF_FH_JSI10Kac_5	36.481	30.771			0.91619	1.0827	73.148	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.91619	1.0827	NaN	1	0	Median	0.25386	0.25251	NaN	1	1	Median	0.42644	0.46119	NaN	1	0	Median	26284000	15520000	10764000	5230800	0	5230800	14202000	9932500	4269400	3042000	2929900	112130	3809100	2657500	1151600	7268	1732	6866	45128;45129;45130;45131	61375;61376;61377	61376	1747		3	
DFPQMGR	0	Unmodified	849.38032	0.38032236	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			2	2	2	1	38.157	34.759	2	0.0085259	31684	160511_QHF_FH_JSI11i_1	83.087	74.934			1.0369	1.0296	25.535	7	1	Median	1.6213	1.3509	42.952	2	1	Median	0.84922	1.0109	7.1827	2	0	Median	0.99465	0.97488	7.7237	2	0	Median	1.3757	1.4571	NaN	1	0	Median	1967900000	971650000	996240000	522330000	205820000	316510000	484630000	293840000	190790000	529360000	268830000	260530000	431560000	203160000	228400000	7269	1069;3467	6867	45132;45133;45134;45135;45136;45137;45138	61378;61379;61380;61381;61382;61383;61384;61385;61386;61387;61388	61379			11	
DFPQMGR	0	Oxidation (M)	865.37524	0.37523698	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	0	By MS/MS				1	0	1									1				36.437	35.205	2	0.044096	30985	160511_QHF_FH_JSI9i_1	52.683	48.83			1.4086	1.1701	NaN	1	0	Median	1.4086	1.1701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79633000	34550000	45083000	79633000	34550000	45083000	0	0	0	0	0	0	0	0	0	7270	1069;3467	6867	45139	61389	61389			1	
DFPQNAIR	0	Unmodified	959.48248	0.48247924	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.703	36.095	2	0.0016338	32432	160511_QHF_FH_JSI11i_1	86.866	65.32			0.88441	1.0673	20.629	4	0	Linear	0.81374	0.66259	NaN	1	0	Median	0.79899	0.95312	NaN	1	0	Median	1.0753	1.0393	NaN	1	0	Median	0.96122	0.9941	NaN	1	0	Median	466860000	232690000	234160000	55748000	26702000	29047000	124560000	66204000	58357000	159860000	82589000	77266000	126690000	57198000	69493000	7271	4698	6868	45140;45141;45142;45143	61390;61391;61392;61393;61394;61395	61391			6	
DFPSFAQLTMK	1	Unmodified	1283.622	0.62200919	1801	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									1	3	1	90.643	90.434	2	0.0015127	79346	160511_QHF_FH_JSI11i_2	67.726	58.512			1.5786	1.637	27.373	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2161	1.349	NaN	1	1	Median	2.0493	1.9866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32231000	16628000	15603000	0	0	0	19179000	11642000	7536800	13052000	4985200	8066300	0	0	0	7272	1801	6869	45144;45145;45146;45147;45148	61396;61397;61398;61399;61400	61399			5	
DFPVESVK	1	Unmodified	919.4651	0.46509784	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	48.061	43.677	2	0.0056305	39668	160511_QHF_FH_JSI12i_1	73.26	57.106			0.97089	1.0606	67.636	7	4	Median	0.7085	0.5717	NaN	1	0	Median	1.9176	2.2126	103.99	2	1	Median	1.3466	1.3111	44.441	2	1	Median	1.1785	1.2679	47.991	2	2	Median	1322200000	703510000	618660000	264740000	127020000	137720000	363050000	196070000	166970000	407500000	218540000	188960000	286890000	161880000	125020000	7273	4686	6870	45149;45150;45151;45152;45153;45154;45155	61401;61402;61403;61404;61405;61406;61407;61408	61402			8	
DFQAISDVIGNK	1	Unmodified	1305.6565	0.65648044	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	80.503	80.059	2	6.78E-05	72838	160511_QHF_FH_JSI10i_1	106.29	74.356			2.1391	1.9624	287.5	4	4	Median	21.171	17.002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0535	1.9795	393.36	2	2	Median	0.21613	0.2265	NaN	1	1	Median	90118000	52911000	37206000	13124000	1541800	11582000	17507000	17507000	0	38388000	16735000	21653000	21098000	17127000	3971100	7274	5371	6871	45156;45157;45158;45159;45160	61409;61410;61411;61412;61413	61412			5	
DFQDCPLQK	1	Unmodified	1149.5125	0.51245874	4909	Q9NPR9	GPR108	Protein GPR108	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.085	36.487	2	0.00070197	33073	160511_QHF_FH_JSI12i_1	80.438	65.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7275	4909	6872	45161	61414	61414			1	
DFQEETVK	1	Unmodified	994.46074	0.46074075	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.77	7					4				2	1	4	4	28.204	24.703	2	0.00026288	21607	160511_QHF_FH_JSI9i_1	133.12	88.669			0.74046	0.72261	138.01	11	11	Median	0.74005	0.60742	211.35	2	2	Median	0.53422	0.6314	NaN	1	1	Median	1.4659	1.4272	151.06	4	4	Median	0.81496	0.86113	141.07	4	4	Median	905340000	435910000	469430000	250340000	143110000	107230000	133810000	78545000	55263000	241270000	80825000	160450000	279920000	133430000	146490000	7276	3132	6873	45162;45163;45164;45165;45166;45167;45168;45169;45170;45171;45172	61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425	61423			11	
DFQGSKLK	2	Acetyl (K)	963.50255	0.50254598	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.484						5	3				3	3	2	41.493	32.14	2	0.00095392	17788	160513_QHF_FH_JSI10Kac_3	111.17	59.38			21.741	22.389	445.65	8	8	Median	NaN	NaN	NaN	0	0	Median	0.0046821	0.0056168	596.27	3	3	Plateau	45.816	45.316	401.68	3	3	Plateau	36.57	39.911	56.96	2	2	Median	138020000	61165000	76859000	0	0	0	64786000	50796000	13990000	42704000	9544800	33159000	30534000	824170	29710000	7277	2178	6874	45173;45174;45175;45176;45177;45178;45179;45180	61426;61427;61428;61429;61430;61431;61432;61433	61433	2297		8	
DFQKDFVK	2	Acetyl (K)	1067.5288	0.52876073	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		65.172	54.108	2	0.031334	30287	160513_QHF_FH_JSI11Kac_4	61.962	27.155			0.051291	0.050374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.051291	0.050374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2492700	2429000	63696	0	0	0	0	0	0	2492700	2429000	63696	0	0	0	7278	2087	6875	45181	61434	61434			1	
DFQKVAHFIHR	1	Acetyl (K)	1438.747	0.7469672	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.258	64.903	4	0.00063822	35261	160513_QHF_FH_JSI11Kac_6	72.652	60.507			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8073500	8073500	0	0	0	0	0	0	0	8073500	8073500	0	0	0	0	7279	1414	6876	45182	61435	61435	1369		1	
DFQSGQHVIVR	0	Unmodified	1284.6575	0.65748349	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7								2	3	6	32.279	31.838	2;3	1.3905E-09	27675	160511_QHF_FH_JSI11i_3	134.68	92.567			0.71271	0.72811	53.112	11	9	Median	NaN	NaN	NaN	0	0	Median	0.50685	0.6273	48.768	2	1	Median	1.5009	1.4114	48.401	3	2	Plateau	0.72435	0.79043	63.296	6	6	Median	741400000	378600000	362800000	0	0	0	122370000	75871000	46495000	284800000	135090000	149710000	334240000	167640000	166600000	7280	1586	6877	45183;45184;45185;45186;45187;45188;45189;45190;45191;45192;45193	61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449	61437			14	
DFQYEAMQER	0	Unmodified	1315.5503	0.55030081	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		44.357	43.684	2	0.0049939	38840	160511_QHF_FH_JSI9i_1	54.539	47.871			0.90022	0.88157	10.51	3	0	Median	1.231	1.0141	NaN	1	0	Median	0.73179	0.82552	NaN	1	0	Median	0.90022	0.88157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98094000	51709000	46385000	24038000	9560100	14478000	30120000	18435000	11686000	43936000	23714000	20222000	0	0	0	7281	5229	6878	45194;45195;45196	61450	61450			1	
DFQYNEEEMK	1	Unmodified	1331.534	0.53398204	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	41.563	40.745	2	1.8104E-06	36055	160511_QHF_FH_JSI9i_1	134.25	116.81			2.747	2.8369	95.568	3	3	Median	4.666	3.7863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3066	1.3454	105.5	2	2	Median	285290000	120260000	165030000	82352000	26103000	56250000	0	0	0	0	0	0	202940000	94157000	108790000	7282	1190	6879	45197;45198;45199	61451;61452;61453	61453			3	
DFSAFINLVEFCR	0	Unmodified	1616.7657	0.76571331	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	10.4	6.86		2							3		2	1	2	99.577	93.392	2	1.4397E-31	48927	160513_QHF_FH_JSI12Kac_6	176.8	136.21			0.99289	1.0857	29.255	4	1	Median	NaN	NaN	NaN	0	0	Median	0.88261	1.0148	NaN	1	0	Median	1.6946	1.6498	NaN	1	0	Median	0.91557	0.97708	24.456	2	1	Median	307540000	145270000	162280000	0	0	0	85289000	44215000	41074000	86600000	36684000	49916000	135650000	64367000	71286000	7283	2094	6880	45200;45201;45202;45203;45204	61454;61455;61456;61457;61458	61456			4	
DFSALESQLQDTQELLQEENR	0	Unmodified	2492.1667	0.16669058	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.73	101.63	2;3	2.2967E-298	92358	160511_QHF_FH_JSI11i_1	467.47	448.39			1.045	1.0421	14.375	8	0	Median	1.1208	0.92564	9.6992	2	0	Median	0.96805	1.1591	9.3832	2	0	Median	1.0082	0.97111	4.3074	2	0	Median	1.1764	1.2228	12.551	2	0	Median	2536900000	1309800000	1227100000	284970000	144170000	140800000	876910000	447000000	429910000	799580000	448570000	351010000	575430000	270090000	305340000	7284	1436	6881	45205;45206;45207;45208;45209;45210;45211;45212	61459;61460;61461;61462;61463;61464;61465;61466;61467	61461			9	
DFSALESQLQDTQELLQEENRQK	1	Unmodified	2748.3202	0.3202311	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	101.2	101.12	3	2.2873E-213	88902	160511_QHF_FH_JSI9i_2	325.11	304.22			0.90837	0.9854	27.461	6	2	Median	1.3242	1.0898	NaN	1	0	Median	0.8345	1.0144	NaN	1	1	Median	1.0755	1.0667	15.304	2	0	Median	0.59617	0.6342	1.8234	2	1	Median	2268500000	1115500000	1153000000	417010000	137410000	279610000	538060000	303020000	235040000	661430000	328240000	333190000	652020000	346810000	305210000	7285	1436	6882	45213;45214;45215;45216;45217;45218;45219	61468;61469;61470;61471;61472;61473;61474	61471			6	
DFSAPTLEDHFNK	1	Unmodified	1519.6943	0.69432251	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										3	1	59.28	58.589	2;3	7.3616E-05	50913	160511_QHF_FH_JSI11i_2	164.43	147.75			1.8105	1.9058	26.642	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9292	1.98	31.169	3	3	Median	1.6991	1.8344	NaN	1	1	Median	153070000	51737000	101330000	0	0	0	0	0	0	127310000	41250000	86065000	25753000	10487000	15266000	7286	1847	6883	45220;45221;45222;45223	61475;61476;61477;61478	61478			4	
DFSASYFSGEQEVTPSR	0	Unmodified	1905.8381	0.83808621	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	67.148	66.137	2	9.1647E-11	60359	160511_QHF_FH_JSI12i_1	102.87	91.007			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20034000	0	20034000	20034000	0	20034000	0	0	0	0	0	0	0	0	0	7287	1660	6884	45224;45225	61479;61480	61479			2	
DFSDITK	1	Unmodified	824.3916	0.39159855	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	3	1	1	39.822	37.495	2	0.0063847	33111	160511_QHF_FH_JSI9i_1	91.9	59.43			0.91604	0.97644	108.74	5	5	Median	7.4234	6.0346	NaN	1	1	Median	0.44556	0.51979	83.363	2	2	Median	1.1193	1.0937	NaN	1	1	Median	0.91604	0.97644	NaN	1	1	Median	1190900000	500360000	690570000	182530000	32865000	149660000	332750000	173380000	159370000	388700000	172540000	216160000	286950000	121570000	165370000	7288	4940	6885	45226;45227;45228;45229;45230;45231	61481;61482;61483;61484;61485;61486;61487;61488	61487			8	
DFSGGWR	0	Unmodified	823.3613	0.36130147	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	39.423	38.495	2	0.019546	33056	160511_QHF_FH_JSI11i_2	58.167	58.167			0.81368	0.81355	28.759	3	1	Median	NaN	NaN	NaN	0	0	Median	0.51779	0.64146	NaN	1	1	Median	0.81368	0.81355	NaN	1	0	Median	1.0498	1.137	NaN	1	0	Median	159440000	89864000	69578000	0	0	0	47945000	30947000	16998000	67445000	34743000	32702000	44052000	24174000	19878000	7289	5279	6886	45232;45233;45234	61489;61490;61491	61490			3	
DFSHPQMPK	1	Unmodified	1085.4964	0.49641475	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.02	5	8	4				3	4	1	6	7	6	6	36.638	32.939	2;3	4.0833E-05	29348	160511_QHF_FH_JSI11i_1	76.827	61.165			0.99759	1.0465	16.437	25	4	Median	1.2262	1.0349	9.2749	6	0	Median	0.88313	1.0425	25.791	7	2	Median	1.0938	1.0943	16.439	6	1	Median	0.91869	1.016	9.4696	6	1	Median	6017400000	3082200000	2935200000	1156200000	490270000	665960000	1639400000	915210000	724220000	2079900000	1030900000	1049000000	1141800000	645770000	496050000	7290	1630	6887	45235;45236;45237;45238;45239;45240;45241;45242;45243;45244;45245;45246;45247;45248;45249;45250;45251;45252;45253;45254;45255;45256;45257;45258;45259	61492;61493;61494;61495;61496;61497;61498;61499;61500;61501;61502;61503;61504;61505;61506;61507;61508;61509;61510;61511;61512;61513;61514;61515;61516;61517;61518;61519;61520;61521;61522;61523;61524;61525;61526;61527;61528;61529	61493			38	
DFSHPQMPK	1	Oxidation (M)	1101.4913	0.49132937	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	34.432	33.102	3	0.011932	28138	160511_QHF_FH_JSI12i_2	37.344	30.214			0.2858	0.32178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2858	0.32178	NaN	1	0	Median	112110000	80142000	31965000	0	0	0	0	0	0	0	0	0	112110000	80142000	31965000	7291	1630	6887	45260	61530	61530		1301	1	
DFSHTGR	0	Unmodified	818.36712	0.36711513	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	7.8038	7.5247	2	0.0037157	5197	160511_QHF_FH_JSI12i_2	102.71	87.082			1.0261	0.99869	25.447	6	0	Median	1.1645	1.023	NaN	1	0	Median	0.81244	0.97496	NaN	1	0	Median	1.111	1.0889	24.365	2	0	Median	1.0811	1.1636	48.965	2	0	Median	828700000	447130000	381570000	131090000	65278000	65811000	149050000	78622000	70424000	286870000	167330000	119540000	261700000	135900000	125790000	7292	1409	6888	45261;45262;45263;45264;45265;45266	61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541	61533			11	
DFSLEQLR	0	Unmodified	1006.5084	0.50835964	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	63.984	63.297	2	1.1298E-14	57339	160511_QHF_FH_JSI10i_1	170.06	72.989			0.86178	0.84956	13.062	7	0	Median	1.1403	0.95134	23.728	2	0	Median	0.78866	0.94656	15.849	2	0	Median	0.87001	0.86573	6.4765	2	0	Median	0.80394	0.84956	NaN	1	0	Median	583330000	328750000	254590000	121830000	57036000	64794000	142050000	88243000	53809000	214620000	117970000	96650000	104830000	65501000	39334000	7293	262	6889	45267;45268;45269;45270;45271;45272;45273	61542;61543;61544;61545;61546;61547;61548;61549;61550	61548			9	
DFSLILDDVAITELSFSR	0	Unmodified	2040.0415	0.041537049	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		4	2							3		3		103.96	103.88	2;3	7.9499E-41	91636	160511_QHF_FH_JSI11i_2	200.01	175.16			1.0629	0.99906	10.411	6	4	Median	1.1564	1.0149	9.2515	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.0567	1.055	13.614	3	1	Median	NaN	NaN	NaN	0	0	Median	128520000	58880000	69644000	40630000	16864000	23765000	0	0	0	87894000	42015000	45879000	0	0	0	7294	4296	6890	45274;45275;45276;45277;45278;45279	61551;61552;61553;61554;61555;61556;61557	61557			7	
DFSMADK	1	Unmodified	812.33745	0.33745449	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	30.531	29.729	2	0.011599	26652	160511_QHF_FH_JSI10i_1	77.058	44.587			0.32639	0.2686	136.62	5	5	Median	1.0453	0.86063	165.1	2	2	Median	0.23193	0.2686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93794	0.96959	187.82	2	2	Median	586780000	306800000	279980000	206710000	95672000	111040000	100600000	75142000	25462000	0	0	0	279470000	135980000	143480000	7295	1438	6891	45280;45281;45282;45283;45284	61558;61559;61560;61561;61562	61560			5	
DFSNSPLHR	0	Unmodified	1071.5098	0.50975662	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	28.159	28.136	2	0.00064398	24171	160511_QHF_FH_JSI11i_3	76.827	57.19			1.1832	1.1616	10.049	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3217	1.2472	NaN	1	0	Median	1.0592	1.0819	NaN	1	0	Median	128870000	57066000	71808000	0	0	0	0	0	0	60017000	26683000	33334000	68856000	30383000	38474000	7296	724	6892	45285;45286	61563	61563			1	
DFSPEALK	1	Unmodified	905.44945	0.44944778	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	49.935	47.555	2	0.0007303	42449	160511_QHF_FH_JSI9i_1	98.997	78.715			0.56135	0.65497	40.44	5	4	Median	1.2889	1.0313	NaN	1	0	Median	0.56135	0.65497	NaN	1	1	Median	0.51324	0.50547	NaN	1	1	Median	0.71002	0.76373	61.981	2	2	Median	1056200000	552690000	503500000	251970000	99451000	152520000	246410000	121470000	124940000	234360000	141670000	92688000	323460000	190090000	133360000	7297	283	6893	45287;45288;45289;45290;45291	61564;61565;61566;61567;61568;61569;61570;61571;61572;61573	61572			10	
DFSPEALKK	2	Unmodified	1033.5444	0.5444108	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	3.39	2	9	2					1		2	3	5	4	39.74	38.287	2;3	8.6335E-05	32704	160511_QHF_FH_JSI11i_2	91.087	85.306			1.8009	2.1233	75.859	14	13	Median	1.6441	1.3899	91.065	2	2	Median	1.6427	1.849	85.497	3	3	Median	2.4918	2.3907	75.712	5	4	Median	0.96546	1.0618	87.849	4	4	Median	927500000	423540000	503960000	139110000	54546000	84561000	212800000	98527000	114270000	276530000	124790000	151730000	299070000	145670000	153400000	7298	283	6894	45292;45293;45294;45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305	61574;61575;61576;61577;61578;61579;61580;61581;61582;61583;61584;61585;61586;61587	61582			14	
DFSPEALKK	2	Acetyl (K)	1075.555	0.55497548	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	67.405	57.815	2	0.01641	29798	160513_QHF_FH_JSI12Kac_3	66.692	38.518			0.01979	0.01902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.01979	0.01902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1759300	1744300	14984	0	0	0	0	0	0	1759300	1744300	14984	0	0	0	7299	283	6894	45306;45307	61588;61589	61589	153		2	
DFSPSGIFGAFQR	0	Unmodified	1427.6834	0.68336389	1869	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	4.16	3	6	9						2	4	7	5	4	99.774	98.895	2;3	5.9678E-53	83376	160511_QHF_FH_JSI10i_3	218.94	200.72			0.97877	1.0694	21.791	19	1	Median	1.8303	1.5295	16.981	4	0	Median	0.84801	1.0156	16.82	6	1	Median	1.0006	0.98939	10.079	5	0	Median	0.8163	0.87774	14.712	4	0	Median	3234800000	1746600000	1488200000	581980000	230410000	351570000	798210000	499620000	298590000	1189600000	636180000	553370000	665080000	380430000	284640000	7300	1869	6895	45308;45309;45310;45311;45312;45313;45314;45315;45316;45317;45318;45319;45320;45321;45322;45323;45324;45325;45326;45327	61590;61591;61592;61593;61594;61595;61596;61597;61598;61599;61600;61601;61602;61603;61604;61605;61606;61607;61608;61609;61610;61611;61612;61613;61614;61615;61616;61617;61618;61619;61620	61598			31	
DFSSHDEINNYLQQIDQLK	1	Unmodified	2306.0815	0.081504383	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		94.768	94.496	3	0.00069888	82905	160511_QHF_FH_JSI9i_2	54.368	46.835			0.95631	0.8788	61.974	2	2	Median	1.5704	1.3621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58237	0.56699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28628000	14578000	14050000	14643000	4905200	9737500	0	0	0	13985000	9672700	4312400	0	0	0	7301	2574	6896	45328;45329	61621;61622	61621			2	
DFSSMKK	2	Unmodified	841.40039	0.4003891	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		4	4							2		1	5	16.145	15.716	2;3	0.011367	12927	160511_QHF_FH_JSI11i_3	93.262	64.75			4.4485	4.9004	210.26	7	7	Median	0.70948	0.60524	313.52	2	2	Median	NaN	NaN	NaN	0	0	Median	6.8066	6.269	NaN	1	1	Median	1.0129	1.069	206.34	4	4	Median	2375200000	1015800000	1359400000	289110000	166340000	122760000	0	0	0	363400000	67907000	295490000	1722700000	781540000	941150000	7302	1484	6897	45330;45331;45332;45333;45334;45335;45336;45337	61623;61624;61625;61626;61627;61628;61629;61630;61631	61623			9	
DFSSVFQFLREEETF	0	Unmodified	1879.8628	0.8628444	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	103.07	103.01	2	1.5947E-117	89833	160511_QHF_FH_JSI12i_3	270.2	237.68			1.1741	1.0527	0.32507	3	1	Median	1.2439	1.0486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1114	1.054	0.18596	2	1	Median	NaN	NaN	NaN	0	0	Median	160770000	76225000	84541000	26758000	13423000	13335000	0	0	0	134010000	62802000	71206000	0	0	0	7303	1380	6898	45338;45339;45340;45341	61632;61633;61634;61635	61635			4	
DFSVFFQK	1	Unmodified	1016.4967	0.49673232	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.31	1	4	1					2	1	2	2	4	1	86.811	85.056	2	0.00048662	76183	160511_QHF_FH_JSI11i_2	127.84	109.11			2.8529	3.1126	45.863	6	6	Median	1.7102	1.5109	NaN	1	1	Median	2.5329	3.1412	NaN	1	1	Median	1.4709	1.5145	55.372	3	3	Plateau	3.2538	3.5707	NaN	1	1	Median	226100000	84536000	141560000	46128000	22207000	23921000	30607000	10952000	19655000	103780000	36137000	67642000	45582000	15239000	30343000	7304	655	6899	45342;45343;45344;45345;45346;45347;45348;45349;45350	61636;61637;61638;61639;61640;61641;61642;61643;61644;61645;61646;61647	61645			12	
DFSVQIK	1	Unmodified	835.44397	0.44396847	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.783	48.103	2	0.0027494	43183	160511_QHF_FH_JSI10i_1	108.98	66.264			0.86484	0.91265	18.107	4	0	Median	1.2877	1.0617	NaN	1	0	Median	0.90897	1.0562	NaN	1	0	Median	0.82285	0.78862	NaN	1	0	Median	0.72287	0.761	NaN	1	0	Median	581190000	298740000	282450000	140250000	60646000	79601000	149570000	84218000	65354000	151490000	77311000	74174000	139890000	76568000	63321000	7305	2147	6900	45351;45352;45353;45354	61648;61649;61650;61651;61652;61653	61651			6	
DFSWSPGGNIIAFWVPEDK	1	Unmodified	2164.0266	0.026555687	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.74		7	4						8	3	4	6	6	100.9	97.244	2;3	3.4059E-71	48832	160513_QHF_FH_JSI12Kac_6	261.39	223.97			1.0262	0.99646	21.318	17	3	Median	1.6832	1.428	14.871	3	1	Plateau	0.73349	0.84388	12.708	3	0	Median	1.0539	1.0047	21.716	6	2	Median	0.84645	0.90189	12.602	5	0	Median	1846100000	932450000	913660000	192960000	66931000	126030000	301670000	162740000	138920000	680500000	346110000	334380000	671000000	356660000	314330000	7306	1867	6901	45355;45356;45357;45358;45359;45360;45361;45362;45363;45364;45365;45366;45367;45368;45369;45370;45371;45372;45373	61654;61655;61656;61657;61658;61659;61660;61661;61662;61663;61664;61665;61666;61667;61668;61669;61670;61671;61672;61673;61674;61675;61676;61677;61678;61679	61675			26	
DFSYNYFGFK	1	Unmodified	1286.5608	0.56078914	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.84	5	3						3	2	3	3	5	2	85.321	80.849	2	1.6938E-07	74773	160511_QHF_FH_JSI11i_2	118.74	79.967			1.2107	1.1659	38.581	12	6	Median	1.8005	1.5579	18.569	3	2	Median	0.845	1.0013	6.7602	3	0	Plateau	0.97452	0.95106	45.622	4	2	Median	1.8693	1.9116	49.103	2	2	Median	345710000	162650000	183070000	62468000	26612000	35856000	93728000	54910000	38817000	145840000	67480000	78356000	43682000	13646000	30036000	7307	1242	6902	45374;45375;45376;45377;45378;45379;45380;45381;45382;45383;45384;45385;45386	61680;61681;61682;61683;61684;61685;61686;61687;61688;61689;61690;61691;61692	61687			12	
DFTATDLSEFAAK	1	Unmodified	1414.6616	0.6616254	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.82	6					2	1			1	4	1	3	79.426	76.123	2	1.1562E-30	69440	160511_QHF_FH_JSI9i_1	205.53	167.23			0.88312	0.85282	61.112	9	6	Median	1.327	1.0939	NaN	1	0	Median	0.55813	0.65161	73.145	4	4	Median	0.88312	0.85282	NaN	1	0	Median	1.0025	1.0924	75.249	3	2	Median	3078800000	1465100000	1613700000	574490000	251970000	322530000	1016900000	440770000	576130000	627300000	314580000	312720000	860110000	457780000	402340000	7308	1545	6903	45387;45388;45389;45390;45391;45392;45393;45394;45395	61693;61694;61695;61696;61697;61698;61699;61700;61701;61702;61703;61704;61705;61706	61703			14	
DFTATFGPLDSLNTR	0	Unmodified	1653.7999	0.79985021	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	92.307	91.907	2	1.4176E-29	83625	160511_QHF_FH_JSI12i_1	184.03	178.31			1.0491	1.0478	18.781	4	1	Median	1.8464	1.5112	NaN	1	1	Median	0.88283	1.0238	NaN	1	0	Median	1.0956	1.0658	NaN	1	0	Median	1.0046	1.0301	NaN	1	0	Median	332430000	165370000	167060000	58504000	15601000	42902000	102810000	54023000	48789000	90041000	45377000	44664000	81071000	50367000	30704000	7309	1002	6904	45396;45397;45398;45399;45400	61707;61708;61709;61710;61711;61712;61713;61714;61715;61716	61710			10	
DFTIYNPNLLTASK	1	Unmodified	1595.8195	0.81952302	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.861	87.418	2	3.4531E-06	79533	160511_QHF_FH_JSI11i_1	130.56	111.82			0.53074	0.49052	34.603	4	4	Median	0.64631	0.54917	NaN	1	1	Median	0.31218	0.36161	NaN	1	1	Median	0.84551	0.80895	NaN	1	1	Median	0.43584	0.43813	NaN	1	1	Median	124590000	81485000	43101000	31333000	18779000	12554000	27492000	21756000	5735700	37735000	18639000	19096000	28025000	22310000	5714900	7310	3679	6905	45401;45402;45403;45404	61717;61718;61719;61720	61717			4	
DFTLNDFGFMIFHSPYCK	1	Unmodified	2237.9914	0.99143251	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.922	88.513	3	1.5094E-70	47903	160513_QHF_FH_JSI12Kac_6	206.98	198.47			1.0139	1.0621	54.967	4	1	Median	3.1079	2.6248	NaN	1	1	Median	0.73835	0.86222	NaN	1	0	Median	0.83206	0.78481	NaN	1	0	Median	1.2354	1.3084	NaN	1	0	Median	536920000	266520000	270410000	60141000	10807000	49334000	80417000	39052000	41365000	217680000	138240000	79444000	178690000	78424000	100260000	7311	2170	6906	45405;45406;45407;45408	61721;61722;61723;61724;61725	61724			5	
DFTNYGLEHWGSDTQGVEK	1	Unmodified	2181.9603	0.96032661	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.29	68.69	3	0.00048849	60076	160511_QHF_FH_JSI11i_2	56.327	47.164			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7312	4083	6907	45409	61726	61726			1	
DFTPAELR	0	Unmodified	947.47125	0.47124585	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	53.228	48.227	2	0.0003612	44286	160511_QHF_FH_JSI12i_1	110.81	56.282			0.94897	0.95071	22.432	7	0	Median	1.042	0.83896	NaN	1	0	Median	1.028	1.2124	34.386	2	0	Median	0.82807	0.81617	1.8864	2	0	Median	0.95196	1.0101	0.53694	2	0	Median	830020000	410670000	419350000	176920000	81815000	95103000	184910000	100670000	84238000	241790000	112000000	129790000	226400000	116180000	110220000	7313	115	6908	45410;45411;45412;45413;45414;45415;45416	61727;61728;61729;61730;61731;61732;61733;61734;61735;61736	61730			10	
DFTPAELRR	0	Unmodified	1103.5724	0.57235688	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		40.197	39.373	3	0.0015507	34423	160511_QHF_FH_JSI9i_2	44.98	25.627			0.95939	0.97718	7.0738	3	0	Median	1.1235	0.97718	NaN	1	0	Median	0.71841	0.87352	NaN	1	0	Median	0.95939	0.99556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110120000	61727000	48393000	33788000	17019000	16770000	36400000	20538000	15863000	39931000	24170000	15761000	0	0	0	7314	115	6909	45417;45418;45419	61737;61738;61739;61740;61741	61738			5	
DFTPGKPLK	2	Unmodified	1001.5546	0.55458155	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							1	2	5	4	30.916	30.553	2;3	0.0048864	25556	160511_QHF_FH_JSI12i_3	55.064	55.064			0.5712	0.65763	88.096	11	11	Median	3.6472	3.1166	NaN	1	1	Median	0.48943	0.58458	16.652	2	2	Median	1.0152	0.98378	86.08	4	4	Median	0.91762	0.9309	109.88	4	4	Median	2138700000	1129300000	1009400000	85500000	24343000	61157000	205700000	127330000	78373000	652480000	336830000	315650000	1195000000	640770000	554200000	7315	4315	6910	45420;45421;45422;45423;45424;45425;45426;45427;45428;45429;45430;45431	61742;61743;61744;61745;61746;61747;61748;61749;61750;61751;61752;61753	61750			12	
DFTPGKPLK	2	Acetyl (K)	1043.5651	0.56514624	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.497						5	4				4	1	4	58.464	48.734	2	0.003847	25975	160513_QHF_FH_JSI12Kac_3	80.438	70.451			3.3406	3.5802	204.28	4	4	Median	NaN	NaN	NaN	0	0	Median	0.86637	0.99542	309.12	2	2	Median	NaN	NaN	NaN	0	0	Median	3.3406	3.5802	115.13	2	2	Median	14937000	9443000	5494000	0	0	0	4378800	2068600	2310100	2186300	2186300	0	8371900	5188000	3183900	7316	4315	6910	45432;45433;45434;45435;45436;45437;45438;45439;45440	61754;61755;61756;61757;61758;61759;61760;61761;61762	61758	3125		9	
DFTPVCTTELGR	0	Unmodified	1394.65	0.65001485	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	64.774	58.451	2	6.1945E-16	53519	160511_QHF_FH_JSI11i_1	161.17	150.94			1.0478	1.0057	48.27	10	1	Median	1.0835	0.88217	NaN	1	0	Median	0.78173	0.92297	80.696	3	1	Plateau	0.80197	0.78411	17.427	3	0	Median	1.0992	1.2046	3.3854	3	0	Plateau	3796500000	1959600000	1837000000	621880000	320150000	301730000	815910000	433270000	382630000	1351200000	674530000	676690000	1007500000	531600000	475930000	7317	1333	6911	45441;45442;45443;45444;45445;45446;45447;45448;45449;45450	61763;61764;61765;61766;61767;61768;61769;61770;61771;61772;61773;61774;61775;61776;61777;61778;61779	61764			17	
DFTQYIFTEK	1	Unmodified	1290.6132	0.61321864	4112	Q96HR8	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	83.019	82.519	2	1.1143E-05	73390	160511_QHF_FH_JSI9i_1	114.4	88.296			1.0765	1.0818	3.7752	3	3	Median	1.3479	1.1493	NaN	1	1	Median	0.91229	1.0723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0765	1.0818	NaN	1	1	Median	95719000	49591000	46129000	31607000	14651000	16956000	36178000	19207000	16971000	0	0	0	27935000	15733000	12202000	7318	4112	6912	45451;45452;45453	61780;61781;61782;61783	61783			4	
DFTSEPR	0	Unmodified	850.3821	0.38209649	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		19.06	18.557	2	0.020108	15664	160511_QHF_FH_JSI11i_1	57.281	32.282			0.81062	0.78301	16.647	3	0	Plateau	0.92028	0.75317	NaN	1	0	Median	0.86507	1.0226	NaN	1	0	Median	0.8104	0.78301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	784070000	432230000	351840000	221990000	110710000	111270000	258880000	159900000	98983000	303200000	161620000	141580000	0	0	0	7319	1508	6913	45454;45455;45456	61784;61785;61786	61784			3	
DFTVASPAEFVTR	0	Unmodified	1438.7092	0.70924429	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.348	79.879	2	4.88E-05	72641	160511_QHF_FH_JSI11i_1	112.13	91.822			1.5591	1.3294	15.906	4	1	Linear	1.3537	1.1113	NaN	1	0	Median	0.79295	0.9244	NaN	1	1	Median	1.4435	1.3534	NaN	1	0	Median	0.99276	1.0455	NaN	1	0	Median	205160000	108050000	97108000	47282000	19187000	28095000	51372000	31010000	20362000	64034000	33680000	30354000	42470000	24174000	18296000	7320	2348	6914	45457;45458;45459;45460	61787;61788;61789;61790;61791;61792;61793	61787			7	
DFTVNTVAGAMK	1	Unmodified	1252.6122	0.61217279	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	65.239	64.702	2	2.1807E-07	58855	160511_QHF_FH_JSI12i_1	132.01	74.421			0.76496	0.7698	35.324	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61713	0.59965	NaN	1	1	Median	0.94819	0.98822	NaN	1	0	Median	85000000	43944000	41056000	0	0	0	0	0	0	34034000	21820000	12214000	50966000	22123000	28842000	7321	4974	6915	45461;45462	61794;61795;61796	61796			3	
DFTVSALHGDMDQK	1	Unmodified	1562.7035	0.70350699	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	4	2	2	55.987	55.142	2;3	1.2672E-14	49793	160511_QHF_FH_JSI10i_1	130.1	115.98			1.0552	1.0299	38.949	10	4	Median	1.4118	1.1964	24.546	3	1	Median	1.1234	1.2825	20.476	3	1	Median	0.94323	0.95178	12.853	2	0	Median	0.52683	0.5645	47.718	2	2	Median	680780000	356870000	323910000	150940000	58210000	92730000	226470000	118490000	107980000	255770000	148520000	107250000	47596000	31650000	15946000	7322	2519	6916	45463;45464;45465;45466;45467;45468;45469;45470;45471;45472;45473	61797;61798;61799;61800;61801;61802;61803;61804	61799			8	
DFTVSAMHGDMDQK	1	Unmodified	1580.6599	0.65992761	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59	9	11	7				4		1	8	7	8	9	49.462	47.35	2;3	1.1341E-66	41022	160511_QHF_FH_JSI11i_2	238.92	234.62			0.9036	0.96415	27.401	25	7	Median	1.1141	0.92339	39.117	7	3	Median	0.85758	1.0311	19.192	7	2	Median	0.88943	0.88447	22.838	5	1	Median	0.89988	0.97406	28.438	6	1	Median	12567000000	6019500000	6547200000	1846400000	839060000	1007300000	2779600000	1421000000	1358700000	3493100000	1637100000	1855900000	4447600000	2122400000	2325200000	7323	1917	6917	45474;45475;45476;45477;45478;45479;45480;45481;45482;45483;45484;45485;45486;45487;45488;45489;45490;45491;45492;45493;45494;45495;45496;45497;45498;45499;45500;45501;45502;45503;45504;45505	61805;61806;61807;61808;61809;61810;61811;61812;61813;61814;61815;61816;61817;61818;61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839;61840;61841;61842;61843;61844;61845;61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856;61857;61858;61859;61860;61861;61862;61863;61864;61865;61866;61867;61868;61869;61870;61871;61872;61873	61854			69	
DFTVSAMHGDMDQK	1	Oxidation (M)	1596.6548	0.65484224	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.39	7	5					1			2	2	5	4	38.751	36.898	2;3	1.4548E-16	33489	160511_QHF_FH_JSI12i_1	210.35	190.05			0.83842	0.90631	30.849	7	6	Median	0.75251	0.61534	NaN	1	1	Median	0.83842	0.99722	NaN	1	0	Median	1.1962	1.1393	49.507	2	2	Median	0.82727	0.90631	17.975	3	3	Median	402330000	192420000	209910000	34218000	18626000	15592000	76524000	39215000	37309000	142850000	56227000	86623000	148740000	78353000	70389000	7324	1917	6917	45506;45507;45508;45509;45510;45511;45512;45513;45514;45515;45516;45517;45518	61874;61875;61876;61877;61878;61879;61880;61881;61882;61883;61884;61885;61886;61887;61888	61879		1587;1588	15	
DFVAEPMGEK	1	Unmodified	1121.5063	0.50631073	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	44.544	43.941	2	0.0005431	38985	160511_QHF_FH_JSI9i_1	71.349	45.612			1.4431	1.4189	95.653	4	2	Median	1.2066	0.98501	NaN	1	0	Median	1.7258	2.044	NaN	1	1	Median	0.7882	0.77277	145.23	2	1	Median	NaN	NaN	NaN	0	0	Median	423360000	235310000	188050000	126540000	66599000	59936000	95535000	46693000	48842000	201290000	122020000	79272000	0	0	0	7325	541	6918	45519;45520;45521;45522;45523	61889;61890;61891;61892;61893	61893			4	
DFVAEPMGEKPVGSLAGIGEVLGK	2	Unmodified	2399.2406	0.24064756	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	98.865	98.838	3	5.2822E-12	87970	160511_QHF_FH_JSI11i_3	110.44	103.05			0.98023	1.0157	89.204	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35845	0.36455	92.576	3	3	Plateau	1.6772	1.7553	77.359	2	2	Median	170160000	85108000	85056000	0	0	0	0	0	0	72725000	46522000	26204000	97438000	38586000	58852000	7326	541	6919	45524;45525;45526;45527;45528	61894;61895;61896;61897;61898;61899	61894			6	
DFVAPHLAQPTGSQSPPPGSK	1	Unmodified	2117.0542	0.054167421	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	52.972	51.587	3	0.0064238	44250	160511_QHF_FH_JSI12i_3	38.736	31.114			1.0399	1.1417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0399	1.1417	NaN	1	1	Median	30895000	16881000	14014000	0	0	0	0	0	0	0	0	0	30895000	16881000	14014000	7327	3955	6920	45529;45530	61900;61901	61901			2	
DFVASIDATYAK	1	Unmodified	1299.6347	0.63468237	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	66.607	65.924	2	6.6772E-16	59915	160511_QHF_FH_JSI12i_1	160.53	132.13			0.57831	0.50201	63.624	5	4	Median	1.148	0.95072	96.767	2	2	Median	0.32349	0.38825	NaN	1	1	Median	0.51936	0.50201	NaN	1	1	Median	0.8089	0.85461	NaN	1	0	Median	982950000	570080000	412870000	262110000	135450000	126660000	292950000	195090000	97862000	216270000	127510000	88767000	211620000	112040000	99584000	7328	1254	6921	45531;45532;45533;45534;45535	61902;61903;61904;61905;61906;61907	61904			6	
DFVDLSTGEDAHK	1	Unmodified	1432.647	0.64703797	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	44.93	44.262	2;3	6.8785E-06	39818	160511_QHF_FH_JSI10i_1	128.51	105.93			0.99243	1.1425	50.217	9	7	Median	1.7409	1.4392	32.648	2	1	Median	0.97903	1.1461	3.3796	2	1	Median	1.2039	1.1805	85.794	2	2	Median	0.7634	0.77925	74.447	3	3	Median	1135900000	481650000	654250000	161540000	64247000	97293000	247410000	122370000	125050000	326320000	127030000	199290000	400630000	168010000	232620000	7329	566	6922	45536;45537;45538;45539;45540;45541;45542;45543;45544	61908;61909;61910;61911;61912;61913;61914;61915;61916;61917;61918	61915			11	
DFVEAPPPK	1	Unmodified	998.5073	0.50729701	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	38.901	35.481	2	2.7523E-05	31863	160511_QHF_FH_JSI11i_1	103.56	76.038			0.90866	0.87364	18.864	6	4	Median	1.0978	0.88912	NaN	1	0	Median	0.59303	0.70449	NaN	1	1	Median	0.86074	0.83159	17.125	2	1	Median	0.95385	1.0118	23.244	2	2	Median	300890000	161630000	139260000	50245000	25952000	24292000	82699000	44197000	38502000	97453000	49803000	47649000	70495000	41677000	28818000	7330	3132	6923	45545;45546;45547;45548;45549;45550	61919;61920;61921;61922;61923;61924;61925;61926;61927	61919			9	
DFVEDDTTHG	0	Unmodified	1134.4465	0.44654725	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.12	5.53	3				3	2					1	4	3	29.673	24.274	2	0.00013146	22243	160511_QHF_FH_JSI12i_1	97.798	94.052			0.9408	0.93115	48.667	8	8	Median	NaN	NaN	NaN	0	0	Median	0.41819	0.45816	NaN	1	1	Median	0.97538	0.93115	50.279	4	4	Median	1.2399	1.3461	41.288	3	3	Median	297550000	156540000	141000000	0	0	0	1080300	747220	333040	170330000	92914000	77413000	126140000	62883000	63257000	7331	5479	6924	45551;45552;45553;45554;45555;45556;45557;45558	61928;61929;61930;61931;61932;61933;61934;61935	61930			8	
DFVLHPR	0	Unmodified	882.47119	0.47118627	1597	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	33.362	33.307	3	0.0062352	29012	160511_QHF_FH_JSI11i_3	51.787	38.799			0.6952	0.69072	37.13	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56554	0.53122	NaN	1	1	Median	0.85459	0.8981	NaN	1	1	Median	41432000	23261000	18171000	0	0	0	0	0	0	19623000	12999000	6624900	21809000	10262000	11546000	7332	1597	6925	45559;45560;45561	61936;61937;61938	61936			3	
DFVNNYLSK	1	Unmodified	1098.5346	0.53457439	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			55.289	54.507	2	9.0323E-05	48408	160511_QHF_FH_JSI9i_1	112.84	98.685			0.89959	0.87928	51.068	2	2	Median	1.5465	1.2617	NaN	1	1	Median	0.5233	0.61277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	262290000	186640000	75652000	102130000	59625000	42503000	160160000	127010000	33149000	0	0	0	0	0	0	7333	5640	6926	45562;45563	61939;61940	61940			2	
DFVNYLVR	0	Unmodified	1024.5342	0.53418046	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	6.01	7	6	3				3	3	1	7	7	5	4	73.606	69.741	2	1.5819E-06	60855	160511_QHF_FH_JSI12i_2	147.69	107.59			1.2604	1.1927	97.496	19	12	Median	1.2604	1.0837	126.05	5	4	Median	0.98499	1.1682	77.218	6	3	Median	1.2924	1.3087	80.657	4	2	Median	1.8197	2.0053	136.52	4	3	Median	5318600000	1922300000	3396300000	1090800000	399360000	691440000	1715100000	679650000	1035400000	1514300000	517200000	997090000	998400000	326090000	672310000	7334	2265	6927	45564;45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577;45578;45579;45580;45581;45582;45583;45584;45585;45586	61941;61942;61943;61944;61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955;61956;61957;61958;61959;61960;61961;61962;61963;61964;61965;61966;61967;61968;61969;61970;61971;61972;61973	61945			33	
DFVPFITK	1	Unmodified	965.52222	0.52221879	1686	P49815	TSC2	Tuberin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.656	78.025	2	0.014654	68575	160511_QHF_FH_JSI11i_2	60.59	46.918			3.5442	3.4677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5442	3.4677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4844500	698760	4145700	0	0	0	0	0	0	4844500	698760	4145700	0	0	0	7335	1686	6928	45587	61974	61974			1	
DFVPYQDIR	0	Unmodified	1151.5611	0.56112349	3755	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	59.79	59.153	2	0.0036856	53646	160511_QHF_FH_JSI12i_1	59.245	50.382			0.94473	1.0986	16.164	4	0	Median	0.95885	0.79701	NaN	1	0	Median	0.93083	1.0986	0	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0409	1.1061	NaN	1	0	Median	199870000	102830000	97043000	38210000	18064000	20146000	112040000	59290000	52747000	0	0	0	49623000	25474000	24149000	7336	3755	6929	45588;45589;45590;45591	61975;61976;61977;61978;61979	61975			4	
DFVQVMR	0	Unmodified	893.44292	0.44292261	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	49.131	48.299	2	0.0052062	43978	160511_QHF_FH_JSI12i_1	102.98	11.396			1.001	1.0168	136.78	16	14	Median	1.249	1.0411	123.04	4	4	Median	0.81809	0.97324	178.65	4	3	Median	1.0528	1.0429	176.88	4	3	Median	0.97181	1.0168	118.09	4	4	Median	2896500000	1346800000	1549700000	611030000	266230000	344800000	735990000	369420000	366570000	799300000	354730000	444570000	750160000	356400000	393760000	7337	2094	6930	45592;45593;45594;45595;45596;45597;45598;45599;45600;45601;45602;45603;45604;45605;45606;45607	61980;61981;61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996	61985			17	
DFVQVMR	0	Oxidation (M)	909.43784	0.43783723	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0			By MS/MS		14	0							2					2		40.095	30.168	2	0.019466	18323	160513_QHF_FH_JSI11Kac_4	72.234	11.272			0.44165	0.44576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44165	0.44576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3984800	2195700	1789100	0	0	0	0	0	0	3984800	2195700	1789100	0	0	0	7338	2094	6930	45608;45609	61997;61998	61998		1759	2	
DFVSEAYLLTLGK	1	Unmodified	1454.7657	0.76569654	4066	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				101.48	101.3	2	0.00043876	89496	160511_QHF_FH_JSI9i_1	92.606	0			1.0582	0.90464	NaN	1	1	Median	1.0582	0.90464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31993000	10382000	21611000	31993000	10382000	21611000	0	0	0	0	0	0	0	0	0	7339	4066	6931	45610	61999	61999			1	
DFVSEQLTSLLVNGVQLPALGENK	1	Unmodified	2570.3592	0.35918279	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.75	0.433	1	3								1	1	1	1	102.96	102.87	3	5.2221E-11	91447	160511_QHF_FH_JSI10i_2	92.886	89.92			0.98427	1.0145	28.09	4	0	Median	1.6986	1.4626	NaN	1	0	Median	0.66931	0.82981	NaN	1	0	Median	0.84059	0.84217	NaN	1	0	Median	1.1525	1.2221	NaN	1	0	Median	226120000	120710000	105410000	38582000	16229000	22353000	69618000	43294000	26324000	56781000	29991000	26790000	61144000	31197000	29948000	7340	1818	6932	45611;45612;45613;45614	62000;62001	62001			2	
DFVSEQLTSLLVNGVQLPALGENKK	2	Unmodified	2698.4541	0.45414581	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	102.3	102.31	3	8.3323E-17	89063	160511_QHF_FH_JSI12i_3	121.35	118.19			1.4165	1.382	17.654	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3152	1.2199	NaN	1	0	Median	1.5256	1.5658	NaN	1	0	Median	510590000	182020000	328570000	0	0	0	0	0	0	78286000	34688000	43598000	432300000	147330000	284970000	7341	1818	6933	45615;45616	62002	62002			1	
DFVSPAYLK	1	Unmodified	1038.5386	0.53859714	5148	Q9NZC3	GDE1	Glycerophosphodiester phosphodiesterase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.243	60.805	2	0.001145	55149	160511_QHF_FH_JSI11i_1	79.906	61.871			2.3815	2.2683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3815	2.2683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30388000	10669000	19718000	0	0	0	0	0	0	30388000	10669000	19718000	0	0	0	7342	5148	6934	45617	62003	62003			1	
DFVTDADAEVLEHSGK	1	Unmodified	1731.7952	0.79515877	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.986	66.392	3	0.00019004	58980	160511_QHF_FH_JSI9i_1	75.143	66.578			1.0401	1.1517	15.466	4	2	Linear	1.9137	1.5656	NaN	1	1	Median	0.98736	1.1426	NaN	1	0	Median	1.2423	1.1957	NaN	1	0	Median	1.4172	1.4755	NaN	1	1	Median	111290000	46884000	64405000	15585000	4818000	10767000	38504000	19187000	19317000	33344000	15508000	17836000	23856000	7371700	16484000	7343	1581	6935	45618;45619;45620;45621	62004;62005;62006	62006			3	
DFVTEALQSR	0	Unmodified	1164.5775	0.57750184	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	5	5.2		3					1			1		2	1	65.856	62.444	2	0.00073346	55083	160511_QHF_FH_JSI9i_2	70.1	54.471			1.1618	1.1704	31.242	4	1	Median	1.6627	1.4651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1618	1.1704	30.697	2	1	Median	0.72671	0.78914	NaN	1	0	Median	146800000	74343000	72460000	30508000	10743000	19765000	0	0	0	60037000	31438000	28599000	56259000	32163000	24097000	7344	2635	6936	45622;45623;45624;45625	62007;62008	62008			2	
DFVTTAEDR	0	Unmodified	1052.4775	0.47745344	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	34.54	30.645	2	8.7366E-05	27666	160511_QHF_FH_JSI10i_1	94.85	69.45			0.75974	0.82056	25.951	5	0	Linear	0.99926	0.82056	NaN	1	0	Median	0.67057	0.77887	NaN	1	0	Median	0.91808	0.91727	23.667	2	0	Median	1.2707	1.3996	NaN	1	0	Median	425440000	244740000	180700000	122700000	56276000	66424000	162590000	108240000	54344000	137870000	79139000	58733000	2283500	1084600	1198800	7345	5495	6937	45626;45627;45628;45629;45630	62009;62010;62011;62012;62013;62014;62015;62016;62017;62018	62014			10	
DFVTVLAK	1	Unmodified	891.50657	0.50656873	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			72.959	62.352	2	0.024022	33311	160513_QHF_FH_JSI10Kac_4	53.166	26.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7346	3183	6938	45631	62019	62019			1	
DFVYPSSTRDPSASNGGGSPAR	0	Unmodified	2224.0145	0.01448745	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			39.663	38.697	3	0.0044292	34058	160511_QHF_FH_JSI10i_2	29.118	21.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8299800	8299800	0	0	0	0	8299800	8299800	0	0	0	0	0	0	0	7347	422	6939	45632	62020	62020			1	
DFWYATYTLYSVSEK	1	Unmodified	1871.8618	0.86178177	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	93.272	83.83	2	0.0086273	45300	160513_QHF_FH_JSI12Kac_6	63.966	31.903			6.2287	6.5973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.2287	6.5973	NaN	1	1	Median	31317000	3060800	28256000	0	0	0	0	0	0	0	0	0	31317000	3060800	28256000	7348	4228	6940	45633	62021	62021			1	
DFYELEPEK	1	Unmodified	1168.5288	0.52882031	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		57.015	56.597	2	0.038875	51284	160511_QHF_FH_JSI11i_1	46.447	25.475			1.0942	1.0621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0942	1.0621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96658000	48138000	48519000	0	0	0	0	0	0	96658000	48138000	48519000	0	0	0	7349	992	6941	45634	62022	62022			1	
DFYLLGR	0	Unmodified	882.45995	0.45995289	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		72.01	71.264	2	0.010614	62216	160511_QHF_FH_JSI11i_2	64.776	32.306			0.33099	0.3277	24.208	3	3	Plateau	0.29205	0.24523	NaN	1	1	Median	0.31339	0.39662	NaN	1	1	Median	0.33305	0.3277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32932000	23657000	9274900	8530800	5952300	2578600	11771000	8113100	3657500	12630000	9591300	3038800	0	0	0	7350	5281	6942	45635;45636;45637;45638;45639	62023;62024;62025;62026;62027	62026			5	
DFYLYYFLMQYPGR	0	Unmodified	1874.8702	0.87017839	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			98.671	90.675	2;3	8.3495E-07	54383	160513_QHF_FH_JSI10Kac_6	180.36	162.17			0.8556	1.0123	63.256	3	3	Plateau	0.47055	0.40581	49.318	2	2	Median	0.8556	1.0123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123500000	81174000	42322000	60758000	47367000	13391000	62739000	33807000	28931000	0	0	0	0	0	0	7351	4603	6943	45640;45641;45642	62028;62029;62030	62030			3	
DFYMTDSISR	0	Unmodified	1233.5336	0.53358811	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	58.511	57.932	2	0.00012606	52692	160511_QHF_FH_JSI12i_1	98.233	85.706			1.0978	1.1314	49.169	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5338	1.4933	NaN	1	1	Median	0.77582	0.80603	47.96	2	2	Median	299450000	171050000	128400000	0	0	0	0	0	0	96261000	38699000	57561000	203190000	132350000	70837000	7352	1306	6944	45643;45644;45645	62031;62032;62033	62033			3	
DFYQFTFNFAK	1	Unmodified	1426.6558	0.65575216	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	2	1	1	1	92.61	85.947	2	9.9737E-27	47866	160513_QHF_FH_JSI10Kac_6	178.22	145.81			1.1262	1.2969	43.718	5	1	Median	0.76029	0.65462	44.304	2	1	Median	1.1262	1.2976	NaN	1	0	Median	1.3814	1.2969	NaN	1	0	Median	1.2443	1.3134	NaN	1	0	Median	829260000	351440000	477810000	174430000	84970000	89463000	189100000	86864000	102240000	204680000	94473000	110210000	261040000	85137000	175910000	7353	4091	6945	45646;45647;45648;45649;45650	62034;62035;62036;62037;62038;62039;62040;62041;62042	62041			9	
DFYVAFQDLPTR	0	Unmodified	1470.7143	0.71432967	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	90.262	89.391	2	0.00015163	77201	160511_QHF_FH_JSI12i_2	138.71	114.86			1.0925	1.2248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0925	1.2248	NaN	1	1	Median	117030000	47889000	69143000	0	0	0	0	0	0	0	0	0	117030000	47889000	69143000	7354	2545	6946	45651;45652	62043;62044	62043			2	
DGAASLSYR	0	Unmodified	938.44576	0.44575938	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	22.233	21.702	2	0.0077167	19040	160511_QHF_FH_JSI12i_1	53.089	36.886			1.1894	1.2172	40.53	4	0	Median	1.4984	1.2436	NaN	1	0	Median	1.1566	1.3646	NaN	1	0	Median	1.2231	1.1914	NaN	1	0	Median	0.54476	0.56668	NaN	1	0	Median	213240000	94366000	118870000	57523000	18917000	38606000	46147000	20778000	25369000	58493000	24004000	34489000	51075000	30668000	20408000	7355	3734	6947	45653;45654;45655;45656	62045;62046	62045			2	
DGADFAK	1	Unmodified	722.32352	0.32351898	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.1	8	1	1		2	2				2	5	3	4	14.244	11.679	2	0.00605	10240	160511_QHF_FH_JSI10i_1	94.262	94.262			0.40101	0.4537	97.672	13	13	Median	1.611	1.3921	127.14	2	2	Median	0.3823	0.4537	84.622	5	5	Median	1.0644	1.0417	113.87	3	3	Plateau	0.30184	0.3158	120.43	3	3	Median	39294000000	19818000000	19476000000	8884100000	3432100000	5451900000	11885000000	6529700000	5354900000	9248100000	4411600000	4836400000	9277700000	5444800000	3832900000	7356	803;944	6948	45657;45658;45659;45660;45661;45662;45663;45664;45665;45666;45667;45668;45669;45670	62047;62048;62049;62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062	62055			16	
DGADFAKWR	1	Acetyl (K)	1106.5145	0.51450765	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.695						8	31	8	2	6	18	11	14	64.437	53.729	2	5.5201E-34	28916	160513_QHF_FH_JSI10Kac_4	205.36	149.83			0.74003	0.73893	175.58	42	8	Median	1.1735	0.88856	70.582	6	0	Median	0.93587	1.1062	245.75	14	4	Median	0.71453	0.70106	42.572	10	1	Median	0.62915	0.68605	195.05	12	3	Median	1655500000	1007800000	647630000	164650000	71577000	93072000	757850000	368490000	389360000	334350000	208680000	125670000	398620000	359100000	39524000	7357	803;944	6949	45671;45672;45673;45674;45675;45676;45677;45678;45679;45680;45681;45682;45683;45684;45685;45686;45687;45688;45689;45690;45691;45692;45693;45694;45695;45696;45697;45698;45699;45700;45701;45702;45703;45704;45705;45706;45707;45708;45709;45710;45711;45712;45713;45714;45715;45716;45717;45718;45719	62063;62064;62065;62066;62067;62068;62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083;62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101;62102;62103;62104;62105;62106;62107;62108;62109;62110;62111;62112;62113;62114;62115;62116;62117;62118;62119;62120;62121;62122;62123;62124;62125;62126	62081	429		63	
DGADIHSDLFISIAQALLGGTAR	0	Unmodified	2340.2074	0.2073736	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				100.22	91.065	3	6.435E-05	52604	160513_QHF_FH_JSI9Kac_6	86.761	51.223			2.557	2.2032	NaN	1	1	Median	2.557	2.2032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69150000	18031000	51119000	69150000	18031000	51119000	0	0	0	0	0	0	0	0	0	7358	4062	6950	45720	62127	62127			1	
DGAFAEFLR	0	Unmodified	1024.4978	0.49779495	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	74.246	73.296	2	0.01632	64289	160511_QHF_FH_JSI11i_2	43.185	25.149			0.75658	0.80188	17.102	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91964	0.90495	NaN	1	0	Median	0.62243	0.71054	NaN	1	0	Median	22730000	15639000	7091100	0	0	0	0	0	0	12614000	7705600	4908300	10116000	7933400	2182800	7359	1403	6951	45721;45722	62128	62128			1	
DGAGFLINLIDSPGHVDFSSEVTAALR	0	Unmodified	2800.4032	0.40317287	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	97.751	89.662	3	2.5922E-116	53574	160513_QHF_FH_JSI10Kac_6	238.2	222.3			0.88102	1.0491	22.502	3	0	Median	1.419	1.1894	NaN	1	0	Median	0.88102	1.0491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71624	0.76826	NaN	1	0	Median	519720000	283410000	236310000	175240000	78898000	96346000	255410000	149720000	105690000	0	0	0	89063000	54793000	34270000	7360	1033	6952	45723;45724;45725	62129;62130;62131	62131			3	
DGALESQDTENVPVTLSEENRSEGK	1	Unmodified	2703.2471	0.24712574	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			52.645	52.236	3	1.046E-08	47028	160511_QHF_FH_JSI10i_1	86.856	66.959			0.82692	0.93137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82692	0.93137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33564000	21443000	12121000	0	0	0	33564000	21443000	12121000	0	0	0	0	0	0	7361	292	6953	45726	62132;62133	62133			2	
DGALHMIGSLAEILLK	1	Unmodified	1679.928	0.92802762	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.07			13						3	4	3	4	5	102.48	100.13	2;3	1.1841E-30	89931	160511_QHF_FH_JSI12i_3	189.37	163.25			1.0076	1.07	37.786	12	6	Median	1.9385	1.6552	10.673	3	2	Plateau	0.98657	1.1303	5.5762	3	2	Median	1.1146	1.0649	16.12	3	1	Median	0.66055	0.66263	16.329	3	1	Plateau	1201500000	645790000	555720000	231040000	85579000	145460000	108020000	49905000	58113000	221890000	107030000	114870000	640560000	403270000	237280000	7362	686	6954	45727;45728;45729;45730;45731;45732;45733;45734;45735;45736;45737;45738;45739;45740;45741;45742	62134;62135;62136;62137;62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150;62151;62152;62153;62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172;62173;62174;62175	62163			42	
DGALHVIGSLAEILLK	1	Unmodified	1647.956	0.95595693	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	1	3	103.46	103.42	2;3	1.267E-07	89952	160511_QHF_FH_JSI12i_3	130.98	117.84			0.80098	0.94458	27.974	3	1	Median	NaN	NaN	NaN	0	0	Median	0.80098	0.94458	NaN	1	1	Median	1.1649	1.0788	NaN	1	0	Median	0.67265	0.6305	NaN	1	0	Median	54196000	31163000	23033000	0	0	0	8844400	4662000	4182400	13825000	7943500	5881600	31527000	18557000	12969000	7363	287	6955	45743;45744;45745;45746;45747;45748	62176;62177;62178;62179;62180;62181;62182;62183;62184	62181			9	
DGALTQLNVAFSR	0	Unmodified	1390.7205	0.72047768	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	72.802	72.227	2	4.5255E-31	65492	160511_QHF_FH_JSI10i_1	194.39	168.77			0.77843	0.84581	19.602	6	0	Median	1.4794	1.2082	NaN	1	0	Median	0.68103	0.81415	0.68224	2	0	Median	0.92469	0.91617	6.5875	2	0	Median	0.63474	0.67286	NaN	1	0	Median	915940000	500240000	415700000	103520000	44106000	59412000	338840000	212960000	125880000	265260000	128940000	136330000	208320000	114240000	94083000	7364	1100	6956	45749;45750;45751;45752;45753;45754;45755	62185;62186;62187;62188;62189;62190;62191;62192;62193;62194	62189			10	
DGAMFFHWR	0	Unmodified	1165.5127	0.51273351	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	75.828	67.693	3	2.238E-05	37368	160513_QHF_FH_JSI10Kac_6	108.74	102.08			0.83272	0.99833	16.412	3	0	Median	1.2356	1.0434	NaN	1	0	Median	0.83272	0.99833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72345	0.77006	NaN	1	0	Median	53856000	27316000	26540000	14692000	8376300	6316100	32425000	14620000	17805000	0	0	0	6738800	4319400	2419400	7365	4900	6957	45756;45757;45758	62195;62196;62197	62197			3	
DGANIVIAAK	1	Unmodified	970.54475	0.54474515	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					1	2	2	1	39.715	37.74	1;2	9.9849E-08	33919	160511_QHF_FH_JSI11i_1	111.82	85.024			1.0403	0.97141	38.262	5	1	Median	1.1121	0.92709	NaN	1	0	Median	0.5936	0.68398	49.613	2	1	Median	1.3624	1.3256	NaN	1	0	Median	1.0403	1.0959	NaN	1	0	Median	800890000	401770000	399120000	143660000	67428000	76236000	242480000	128730000	113760000	270500000	125650000	144850000	144240000	79963000	64281000	7366	3175	6958	45759;45760;45761;45762;45763;45764	62198;62199;62200;62201;62202;62203;62204;62205;62206;62207	62198			10	
DGAPGEPPLPGAEPPLAHPGTDK	1	Unmodified	2219.0859	0.08586148	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				59.896	58.775	3	0.032065	52151	160511_QHF_FH_JSI9i_1	25.536	19.722			0.94118	0.76781	NaN	1	1	Median	0.94118	0.76781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34592000	20179000	14413000	34592000	20179000	14413000	0	0	0	0	0	0	0	0	0	7367	2913	6959	45765	62208	62208			1	
DGAPSPMMPNEAR	0	Unmodified	1371.5911	0.59111977	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	37.211	36.304	2	0.015592	32077	160511_QHF_FH_JSI9i_1	51.998	41.767			0.69539	0.64612	4.6911	2	2	Median	0.8226	0.66791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58785	0.62504	NaN	1	1	Median	40713000	24399000	16314000	18544000	9587800	8956700	0	0	0	0	0	0	22168000	14811000	7357300	7368	1366	6960	45766;45767	62209;62210	62210			2	
DGAPVATNAFHSPR	0	Unmodified	1438.6953	0.69532556	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.5		5	1					1		1	1	3	2	38.448	33.107	2;3	9.9261E-13	29101	160511_QHF_FH_JSI9i_2	119.45	102.87			0.88668	0.87106	84.967	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88668	0.87106	84.967	2	2	Median	NaN	NaN	NaN	0	0	Median	22925000	9081700	13843000	0	0	0	0	0	0	22925000	9081700	13843000	0	0	0	7369	4234	6961	45768;45769;45770;45771;45772;45773;45774	62211;62212;62213;62214;62215;62216;62217;62218	62212			8	
DGATILTHAYSR	0	Unmodified	1303.6521	0.65206377	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	39.868	39.064	2	9.7196E-11	34310	160511_QHF_FH_JSI10i_2	145.46	84.546			0.9876	1.0841	17.776	4	1	Median	1.7515	1.4835	NaN	1	0	Median	0.88908	1.0966	NaN	1	0	Median	0.97517	0.98886	NaN	1	0	Median	1.0002	1.0717	NaN	1	1	Median	290860000	142450000	148410000	54595000	20962000	33633000	66574000	37894000	28679000	111060000	59823000	51236000	58635000	23769000	34866000	7370	2518	6962	45775;45776;45777;45778;45779	62219;62220;62221;62222;62223;62224	62222			6	
DGATLILSK	1	Unmodified	916.52295	0.52294707	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	4.47	5					1				2	1	3		46.718	45.982	2	8.193E-05	41435	160511_QHF_FH_JSI10i_1	113.71	53.229			1.1175	0.92253	71.731	5	5	Median	1.8543	1.5037	70.521	2	2	Median	0.41664	0.4854	NaN	1	1	Median	1.5739	1.5352	72.026	2	2	Median	NaN	NaN	NaN	0	0	Median	279620000	130940000	148680000	113180000	46972000	66206000	51080000	33218000	17861000	115370000	50750000	64616000	0	0	0	7371	236	6963	45780;45781;45782;45783;45784;45785	62225;62226;62227;62228;62229;62230	62228			6	
DGAVNGPSVVGDQTPIEPQTSIER	0	Unmodified	2465.2034	0.20341043	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	64.652	64.185	2;3	2.4216E-34	58383	160511_QHF_FH_JSI11i_1	232.74	214.33			1.1042	1.2032	17.759	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0859	1.3144	NaN	1	0	Median	1.3071	1.2796	21.212	2	0	Median	0.94799	0.99956	NaN	1	0	Median	397030000	190830000	206200000	0	0	0	65341000	34336000	31005000	240810000	114310000	126500000	90883000	42183000	48700000	7372	1649	6964	45786;45787;45788;45789	62231;62232;62233;62234;62235;62236	62232			6	
DGAWGAFR	0	Unmodified	878.4035	0.40350064	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.78	4	4	3					2		2	3	4	4	46.591	44.105	2	0.0004388	37950	160511_QHF_FH_JSI11i_2	108.24	61.812			0.90976	0.98977	39.003	12	1	Median	2.0199	1.6944	12.311	2	0	Median	0.90429	1.0996	12.105	3	0	Median	0.9551	0.96181	10.595	4	0	Median	0.55765	0.595	17.827	3	1	Median	1611100000	804140000	806930000	217300000	74297000	143000000	428010000	225240000	202770000	602440000	273050000	329390000	363330000	231560000	131770000	7373	1650	6965	45790;45791;45792;45793;45794;45795;45796;45797;45798;45799;45800;45801;45802	62237;62238;62239;62240;62241;62242;62243;62244;62245;62246;62247;62248;62249;62250;62251;62252;62253;62254;62255;62256;62257;62258;62259;62260	62254			24	
DGAYYQLFVR	0	Unmodified	1230.6033	0.60332266	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	15	0								2			1		1	79.692	69.267	2	0.0027657	34054	160513_QHF_FH_JSI12Kac_5	72.485	53.214			0.95033	1.0699	63.955	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4614	1.6818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61799	0.68071	NaN	1	0	Median	4793300	2837000	1956300	0	0	0	3151000	1623700	1527300	0	0	0	1642300	1213300	428980	7374	4878	6966	45803;45804	62261;62262;62263	62261			3	
DGDDVIIIGVFK	1	Unmodified	1289.6867	0.68671794	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.757	96.772	2	0.0052649	87749	160511_QHF_FH_JSI10i_1	54.608	39.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7375	1034	6967	45805	62264	62264			1	
DGDESSPILTSFELVK	1	Unmodified	1735.8516	0.85161101	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			97.335	97.35	2	0.00041459	88233	160511_QHF_FH_JSI10i_1	69.815	54.671			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7376	3636	6968	45806;45807	62265;62266	62265			2	
DGDFENPVPYTGAVK	1	Unmodified	1607.7468	0.74675201	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	5.87	7				2	5				2	5	2	5	65.785	60.775	2;3	1.2893E-29	55341	160511_QHF_FH_JSI12i_1	185.25	167.44			0.98409	1.0311	24.927	13	0	Median	1.3201	1.0831	4.259	2	0	Median	0.77029	0.89776	34.496	5	0	Median	1.1134	1.0828	2.2248	2	0	Median	0.84266	0.87999	20.967	4	0	Median	4269500000	2203200000	2066300000	986150000	383210000	602940000	1188100000	708430000	479690000	1144800000	527380000	617450000	950420000	584160000	366250000	7377	1332	6969	45808;45809;45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820;45821	62267;62268;62269;62270;62271;62272;62273;62274;62275;62276;62277;62278;62279;62280;62281;62282;62283;62284;62285;62286;62287;62288;62289;62290;62291;62292;62293;62294;62295;62296	62273			29	
DGDGTITTK	1	Unmodified	906.42944	0.42944062	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	4.8	6	5	3	2	4	1				3	5	6	7	9.8947	7.1975	2	8.9026E-08	6146	160511_QHF_FH_JSI9i_1	141.2	122.47			0.78749	0.90847	63.486	21	14	Median	1.3675	1.1586	17.154	3	1	Median	0.56214	0.63338	33.52	5	3	Median	1.4676	1.4539	102.13	6	5	Median	0.59042	0.63523	36.797	7	5	Median	18242000000	9219700000	9022400000	3807500000	1339400000	2468000000	5276600000	3189800000	2086800000	4419600000	2056800000	2362800000	4738400000	2633700000	2104700000	7378	958	6970	45822;45823;45824;45825;45826;45827;45828;45829;45830;45831;45832;45833;45834;45835;45836;45837;45838;45839;45840;45841;45842	62297;62298;62299;62300;62301;62302;62303;62304;62305;62306;62307;62308;62309;62310;62311;62312;62313;62314;62315;62316;62317;62318;62319;62320;62321;62322;62323;62324	62311			28	
DGDILGK	1	Unmodified	716.37047	0.37046918	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				3	3	3	3	24.095	20.224	2	0.0049913	19281	160511_QHF_FH_JSI11i_1	110.61	45.808			1.9432	1.8348	195.65	12	11	Median	1.813	1.476	192.85	3	2	Median	0.20386	0.24253	249.85	3	3	Median	4.4607	4.4212	241.31	3	3	Median	2.0828	2.281	204.35	3	3	Median	12175000000	6005800000	6169200000	3050500000	1062200000	1988300000	2831700000	1567100000	1264700000	2796200000	1189700000	1606500000	3496500000	2186800000	1309700000	7379	1959	6971	45843;45844;45845;45846;45847;45848;45849;45850;45851;45852;45853;45854	62325;62326;62327;62328;62329;62330;62331;62332;62333;62334;62335;62336;62337;62338;62339;62340;62341;62342;62343	62326			19	
DGDILGKYVD	1	Acetyl (K)	1135.5397	0.53971935	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	0.497				4	5					1	3	2	3	80.258	72.32	2	0.0019277	28430	160513_QHF_FH_JSI12Kacf_1	82.426	71.204			0.88734	0.81571	187.95	9	2	Median	0.88734	0.65852	NaN	1	0	Median	0.68586	0.77433	272.1	3	1	Plateau	0.79983	0.77746	6.7921	2	0	Median	0.96531	1.0675	201.77	3	1	Median	188220000	96433000	91787000	9271400	4911700	4359700	76507000	36658000	39849000	23729000	11535000	12194000	78713000	43329000	35384000	7380	1959	6972	45855;45856;45857;45858;45859;45860;45861;45862;45863	62344;62345;62346;62347;62348;62349;62350;62351;62352	62348	1973		9	
DGDKPEETQGK	2	Unmodified	1202.5415	0.54151026	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	5.3521	4.9665	2	7.8312E-09	2982	160511_QHF_FH_JSI12i_1	135.86	117.08			0.87027	0.95249	27.924	3	0	Median	1.1802	0.95249	NaN	1	0	Median	0.87027	1.0192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58432	0.60962	NaN	1	0	Median	498880000	252790000	246090000	176090000	65535000	110560000	157120000	85285000	71840000	0	0	0	165660000	101970000	63689000	7381	2569	6973	45864;45865;45866	62353;62354;62355	62353			3	
DGDLIATK	1	Unmodified	831.4338	0.43379771	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	24.341	23.654	2	0.0021049	20879	160511_QHF_FH_JSI10i_1	91.853	38.299			0.50415	0.50823	122.98	5	5	Median	1.4189	1.1648	188.76	2	2	Median	0.43516	0.50823	NaN	1	1	Median	0.50415	0.48937	NaN	1	1	Median	3.1611	3.3681	NaN	1	1	Median	1730600000	811380000	919260000	602410000	256430000	345980000	346390000	186560000	159830000	360970000	216630000	144340000	420860000	151760000	269100000	7382	388	6974	45867;45868;45869;45870;45871	62356;62357;62358;62359;62360	62358			5	
DGDSVMVLPTIPEEEAK	1	Oxidation (M)	1844.8714	0.87136018	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	7.88	5.33	3				5						2	3	3	74.585	69.184	2;3	4.2311E-30	63754	160511_QHF_FH_JSI11i_1	188.59	155.64			0.8234	0.9176	20.258	8	0	Median	NaN	NaN	NaN	0	0	Median	0.78698	0.9176	1.6631	2	0	Median	1.0824	1.0488	25.544	3	0	Plateau	0.84935	0.87444	27.856	3	0	Median	324900000	172310000	152580000	0	0	0	89679000	48990000	40689000	98898000	50613000	48285000	136320000	72708000	63610000	7383	1333	6975	45872;45873;45874;45875;45876;45877;45878;45879	62361;62362;62363;62364;62365;62366;62367;62368;62369;62370;62371;62372;62373;62374	62363		975	14	
DGDSVMVLPTIPEEEAK	1	Unmodified	1828.8764	0.87644556	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	12		3							5	3	3	4	83.273	82.657	2;3	5.1451E-52	74429	160511_QHF_FH_JSI12i_1	215.85	207.54			1.0503	1.0125	14.49	13	3	Median	1.3082	1.0575	6.6056	4	1	Median	0.82999	0.96857	12.506	3	0	Median	1.0503	1.0301	4.3829	3	1	Plateau	0.68608	0.72936	10.045	3	1	Plateau	7679800000	3965600000	3714200000	1789800000	730410000	1059400000	1945100000	1076600000	868440000	2364600000	1163600000	1201000000	1580300000	994950000	585330000	7384	1333	6975	45880;45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894	62375;62376;62377;62378;62379;62380;62381;62382;62383;62384;62385;62386;62387;62388;62389;62390;62391;62392;62393;62394;62395;62396;62397;62398;62399;62400;62401;62402;62403;62404;62405;62406;62407;62408;62409;62410	62388			36	
DGDSVMVLPTIPEEEAKK	2	Unmodified	1956.9714	0.97140857	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By matching	1	0	6									2	1	2	1	71.669	71.102	2;3	1.8854E-07	64710	160511_QHF_FH_JSI11i_1	95.873	90.872			0.85452	0.89457	14.116	6	1	Median	1.0375	0.86154	28.744	2	1	Median	0.74231	0.90351	NaN	1	0	Median	0.9546	0.92763	10.651	2	0	Median	0.83436	0.88571	NaN	1	0	Median	1133400000	572170000	561210000	253950000	99733000	154220000	275540000	153860000	121680000	352900000	171750000	181150000	250990000	146830000	104150000	7385	1333	6976	45895;45896;45897;45898;45899;45900	62411;62412;62413;62414	62413			4	
DGDVIKTEGATLR	1	Acetyl (K)	1415.7256	0.72562264	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		58.612	49.006	2	0.043479	26070	160513_QHF_FH_JSI11Kac_3	50.284	23.769			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	581490	581490	0	0	0	0	0	0	0	581490	581490	0	0	0	0	7386	2858	6977	45901	62415	62415			1	
DGDVTVTNDGATILSMMDVDHQIAK	1	Unmodified	2645.2313	0.23128144	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.617	9	1	1							3	1	4	3	99.349	99.212	3	4.291E-63	89242	160511_QHF_FH_JSI10i_1	212.01	196.08			1.044	0.96659	26.382	10	3	Median	1.6613	1.3637	21.123	3	1	Median	0.69299	0.82107	NaN	1	0	Median	1.021	0.96291	22.214	3	1	Median	0.64206	0.67223	25.326	3	1	Plateau	1228800000	642840000	586000000	125690000	49928000	75759000	482850000	252060000	230790000	266500000	136370000	130130000	353790000	204470000	149330000	7387	1630	6978	45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912	62416;62417;62418;62419;62420;62421;62422;62423;62424;62425;62426;62427;62428;62429;62430;62431;62432;62433;62434;62435;62436;62437;62438;62439;62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451	62436			36	
DGDVVILR	0	Unmodified	885.49198	0.4919813	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.113	42.477	2	0.016966	38574	160511_QHF_FH_JSI12i_1	58.917	38.362			0.25075	0.25855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25075	0.25855	NaN	1	1	Median	24048000	18794000	5254500	0	0	0	0	0	0	0	0	0	24048000	18794000	5254500	7388	2968	6979	45913	62452	62452			1	
DGEDLMDESVLK	1	Unmodified	1349.6021	0.60206161	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	64.332	63.667	2	2.9259E-07	57930	160511_QHF_FH_JSI12i_1	128.81	123.61			1.1927	1.0848	18.996	6	5	Median	1.3189	1.0882	16.306	2	2	Median	1.2169	1.4072	NaN	1	1	Median	1.0165	1.0022	25.246	2	2	Median	0.92062	0.98224	NaN	1	0	Median	602090000	303610000	298480000	169980000	72149000	97833000	98517000	48041000	50476000	225630000	120790000	104850000	107960000	62634000	45327000	7389	2453	6980	45914;45915;45916;45917;45918;45919	62453;62454;62455;62456;62457;62458;62459	62456			7	
DGEDQTQDTELVETRPAGDGTFQK	1	Unmodified	2636.1838	0.1837972	788;967;1352;1354;2788	P10316;P01892;P01891;P30453;P30457;P30459;P16190;P10314;P18462;P30508;Q29960;Q07000;P30505;Q9TNN7;P30501;Q95604;Q29963;P10321;P01893	HLA-A;HLA-C;HLA-H	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	16									5	3	4	4	49.031	48.33	2;3	6.7562E-91	43466	160511_QHF_FH_JSI11i_1	251.3	250.09			0.83769	0.98016	25.666	12	4	Median	1.2865	1.0587	14.403	3	1	Median	0.82638	0.98147	3.1096	2	0	Median	1.0687	1.0484	37.318	3	1	Median	0.7303	0.7729	18.007	4	2	Median	7259000000	3482900000	3776100000	1194200000	515090000	679120000	2162400000	1110500000	1051900000	1821200000	711910000	1109300000	2081200000	1145400000	935830000	7390	967;788;1352;1354;2788	6981	45920;45921;45922;45923;45924;45925;45926;45927;45928;45929;45930;45931;45932;45933;45934;45935	62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476;62477;62478;62479;62480;62481;62482;62483;62484;62485;62486;62487;62488;62489;62490;62491;62492;62493;62494;62495;62496;62497	62464			38	
DGEDQTQDTELVETRPAGDR	0	Unmodified	2230.9938	0.99381159	1353	P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P03989;Q04826;P30488;P30487;P30485;P30483;P30461	HLA-B	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain	no	no	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.65	33.046	3	1.4165E-12	29533	160511_QHF_FH_JSI10i_1	140.95	132.35			0.82455	0.85745	17.956	4	1	Median	1.3838	1.1108	NaN	1	0	Median	0.74598	0.86888	NaN	1	0	Median	0.91139	0.84617	NaN	1	1	Median	0.69941	0.71889	NaN	1	0	Median	224620000	114910000	109710000	40452000	15769000	24683000	68951000	42620000	26332000	68193000	31818000	36375000	47025000	24707000	22318000	7391	1353	6982	45936;45937;45938;45939	62498;62499;62500	62500			3	
DGEEAGAYDGPR	0	Unmodified	1235.5055	0.50545911	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.35	4				4	5				1	4	4	4	22.455	17.572	2	4.327E-16	15445	160511_QHF_FH_JSI11i_1	163.66	162.17			0.95779	0.96648	22.085	11	5	Median	1.3202	1.0738	NaN	1	0	Median	0.84025	0.97866	22.648	4	2	Median	0.99298	0.96648	16.989	3	2	Median	0.67977	0.72492	36.6	3	1	Plateau	1344700000	641740000	702940000	299540000	119480000	180060000	382360000	180640000	201720000	400850000	194880000	205960000	261930000	146740000	115190000	7392	1344	6983	45940;45941;45942;45943;45944;45945;45946;45947;45948;45949;45950;45951;45952	62501;62502;62503;62504;62505;62506;62507;62508;62509;62510;62511;62512;62513;62514;62515;62516;62517;62518;62519	62501			19	
DGEETTVEEIK	1	Unmodified	1248.5721	0.57214169	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		6.5	5.5	1				1							2		34.687	30.156	2	9.994E-06	27193	160511_QHF_FH_JSI11i_1	110.53	98.308			0.58265	0.56711	54.543	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58265	0.56711	54.543	2	2	Median	NaN	NaN	NaN	0	0	Median	23594000	16569000	7025200	0	0	0	0	0	0	23594000	16569000	7025200	0	0	0	7393	4007	6984	45953;45954	62520;62521	62520			2	
DGEIVGLSGR	0	Unmodified	1001.5142	0.5141733	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.608	37.392	2	0.045191	33064	160511_QHF_FH_JSI9i_1	51.268	24.665			4.633	3.7748	NaN	1	0	Median	4.633	3.7748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48177000	10275000	37902000	48177000	10275000	37902000	0	0	0	0	0	0	0	0	0	7394	1316	6985	45955	62522	62522			0	
DGENYVVLLDSTLPR	0	Unmodified	1689.8574	0.85736509	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	99.279	99.133	2;3	5.1116E-06	87812	160511_QHF_FH_JSI9i_1	77.222	68.838			0.81672	0.78842	48.397	8	4	Median	1.931	1.5645	8.6181	2	2	Median	0.64794	0.73651	1.2144	2	1	Median	1.061	1.0098	27.621	2	0	Median	0.51375	0.52385	50.432	2	1	Median	152910000	81937000	70972000	27592000	9845600	17747000	46216000	26774000	19442000	44700000	21585000	23115000	34400000	23732000	10667000	7395	2638;2895	6986	45956;45957;45958;45959;45960;45961;45962;45963;45964	62523;62524;62525;62526;62527;62528;62529;62530;62531;62532	62532			10	
DGEQHEDLNEVAK	1	Unmodified	1482.6587	0.65866529	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	21.856	19.412	2;3	6.1399E-06	16852	160511_QHF_FH_JSI12i_1	109.84	104.99			0.94785	0.98897	14.855	11	0	Median	1.2516	1.0252	4.2735	2	0	Median	0.93753	1.0999	14.745	3	0	Plateau	1.0416	1.0032	6.1163	3	0	Median	0.90056	0.95569	20.059	3	0	Plateau	1742100000	876880000	865230000	402310000	159550000	242760000	466940000	250960000	215980000	473360000	251930000	221420000	399500000	214440000	185060000	7396	736	6987	45965;45966;45967;45968;45969;45970;45971;45972;45973;45974;45975	62533;62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550;62551;62552	62537			20	
DGEQPQILLEDSSAGEDSVHDR	0	Unmodified	2396.0728	0.07279019	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.913	56.423	3	1.5287E-08	51054	160511_QHF_FH_JSI11i_1	95.835	92.782			0.98873	0.98547	3.6194	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.82546	0.97381	NaN	1	0	Median	1.0253	1.0063	NaN	1	0	Median	0.98873	1.0468	NaN	1	1	Median	123460000	65845000	57618000	0	0	0	46163000	23793000	22370000	41249000	23896000	17353000	36051000	18155000	17895000	7397	4152	6988	45976;45977;45978	62553;62554;62555;62556	62553			4	
DGERLPLAVK	1	Unmodified	1096.6241	0.6240581	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	41.207	40.464	3	0.00025972	34670	160511_QHF_FH_JSI12i_2	57.149	40.478			1.573	1.5464	36.557	7	3	Median	2.4407	2.0721	NaN	1	0	Median	1.9729	2.3584	31.472	2	1	Median	1.4454	1.378	16.305	2	1	Median	1.1181	1.17	26.361	2	1	Median	650600000	259440000	391160000	117290000	33882000	83410000	224040000	98965000	125080000	202470000	75543000	126930000	106790000	51052000	55741000	7398	1438	6989	45979;45980;45981;45982;45983;45984;45985	62557;62558;62559;62560;62561;62562;62563;62564	62558			8	
DGETLEELMK	1	Unmodified	1163.538	0.53800479	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	3	2	3	68.163	65.991	2	1.0421E-06	59730	160511_QHF_FH_JSI12i_1	125.82	103.08			1.4244	1.5375	80.527	10	10	Median	0.84213	0.69274	115.96	2	2	Median	1.4238	1.619	89.741	3	3	Median	0.92779	0.91224	97.433	2	2	Median	0.78557	0.83232	86.597	3	3	Plateau	3050500000	1660200000	1390300000	742960000	412060000	330900000	735260000	390040000	345220000	911440000	479880000	431560000	660820000	378180000	282640000	7399	1039	6990	45986;45987;45988;45989;45990;45991;45992;45993;45994;45995	62565;62566;62567;62568;62569;62570;62571;62572;62573;62574;62575	62567			11	
DGETLEELMK	1	Oxidation (M)	1179.5329	0.53291941	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	45.164	41.387	2	0.0059447	37708	160511_QHF_FH_JSI12i_1	63.216	56.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7400	1039	6990	45996;45997;45998	62576;62577;62578	62576		653	3	
DGETLTTK	1	Unmodified	863.42363	0.42362696	961	P10109	FDX1	Adrenodoxin, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			11.39	11.154	2	0.016368	8904	160511_QHF_FH_JSI10i_1	59.35	40.971			0.5636	0.67291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5636	0.67291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130990000	73626000	57363000	0	0	0	130990000	73626000	57363000	0	0	0	0	0	0	7401	961	6991	45999	62579	62579			1	
DGETPDPEDPSRK	1	Unmodified	1441.6321	0.63211618	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.286	13.84	2	9.8134E-05	11470	160511_QHF_FH_JSI10i_1	94.616	86.084			0.90453	0.89333	16.589	3	1	Plateau	1.1036	0.89333	NaN	1	0	Median	0.74137	0.86231	NaN	1	0	Median	0.69143	0.65957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	130320000	69646000	60675000	50148000	24500000	25648000	41388000	24615000	16774000	38785000	20532000	18253000	0	0	0	7402	943	6992	46000;46001;46002;46003	62580;62581;62582;62583;62584	62583			5	
DGEVPPEEFSTFIK	1	Unmodified	1593.7563	0.75625407	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									4	2	3	2	82.85	82.437	2	5.7336E-10	72928	160511_QHF_FH_JSI9i_1	109.24	95.644			0.91512	0.92289	21.491	7	3	Median	1.0756	0.87965	NaN	1	0	Median	1.0091	1.186	13.771	2	1	Median	1.0442	1.0202	20.499	2	1	Median	0.77066	0.79673	20.789	2	1	Median	510490000	269710000	240780000	74192000	39626000	34566000	191280000	96717000	94560000	129700000	70181000	59516000	115330000	63185000	52141000	7403	3973	6993	46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014	62585;62586;62587;62588;62589;62590;62591;62592;62593;62594;62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605;62606;62607;62608;62609;62610;62611;62612	62611			28	
DGFFGNPLAPNPADK	1	Unmodified	1558.7416	0.74160705	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			76.439	76.272	2	0.017085	69140	160511_QHF_FH_JSI10i_1	50.563	36.356			1.7208	1.9559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7208	1.9559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25140000	8173800	16966000	0	0	0	25140000	8173800	16966000	0	0	0	0	0	0	7404	983	6994	46015	62613	62613			1	
DGFGFIK	1	Unmodified	782.39629	0.39629	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			2	4	3	2	60.431	58.751	2	0.009255	50321	160511_QHF_FH_JSI12i_2	79.939	79.939			1.3784	1.2909	43.387	11	1	Median	1.5479	1.2652	2.8463	2	0	Median	1.4329	1.6941	64.129	4	0	Median	1.3784	1.2912	10.467	3	1	Median	0.99994	1.0732	40.356	2	0	Median	771520000	352740000	418780000	107650000	40058000	67589000	184740000	82502000	102240000	279600000	130400000	149200000	199530000	99778000	99750000	7405	543	6995	46016;46017;46018;46019;46020;46021;46022;46023;46024;46025;46026	62614;62615;62616;62617;62618;62619;62620;62621;62622;62623;62624;62625	62615			12	
DGFGGLAAAR	0	Unmodified	933.46683	0.46682918	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			40.18	39.789	2	0.010084	35676	160511_QHF_FH_JSI10i_1	48.794	37.426			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7406	4118	6996	46027	62626	62626			1	
DGFIDLMELK	1	Unmodified	1179.5846	0.58456105	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	2	1	99.115	98.966	2	3.7627E-07	89805	160511_QHF_FH_JSI12i_1	113.22	113.22			0.82017	0.81254	38.792	8	1	Median	1.3721	1.1803	45.546	3	1	Median	0.67903	0.81254	2.4235	2	0	Median	0.82017	0.78461	11.303	2	0	Median	0.45893	0.48288	NaN	1	0	Median	325860000	167400000	158460000	73147000	30160000	42987000	109030000	60139000	48896000	105820000	54224000	51599000	37852000	22877000	14974000	7407	3998	6997	46028;46029;46030;46031;46032;46033;46034;46035	62627;62628;62629;62630;62631;62632;62633;62634;62635;62636;62637;62638;62639;62640;62641	62630			14	
DGFNPADVEAGLYGSHLYVWDWQR	0	Unmodified	2794.2776	0.27757843	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	94.436	85.177	3	8.2882E-78	46230	160513_QHF_FH_JSI12Kac_6	205.53	192.6			0.6743	0.70874	59.087	3	2	Plateau	2.2795	1.9553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6077	1.5297	NaN	1	1	Median	0.60488	0.63554	NaN	1	0	Median	197580000	76187000	121390000	53755000	13683000	40072000	0	0	0	73714000	20534000	53180000	70107000	41970000	28137000	7408	2374	6998	46036;46037;46038	62642;62643;62644	62644			3	
DGFPSGTPALNAK	1	Unmodified	1273.6303	0.63026569	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.591	48.912	2	0.00022891	44064	160511_QHF_FH_JSI10i_1	78.683	70.853			1.2133	1.0927	26.996	4	1	Median	1.3205	1.0793	NaN	1	0	Median	0.72063	0.86219	NaN	1	0	Median	1.1147	1.1062	NaN	1	0	Median	1.5625	1.65	NaN	1	1	Median	506630000	241460000	265160000	104290000	44967000	59319000	129430000	77915000	51520000	130020000	66255000	63768000	142880000	52327000	90556000	7409	2366	6999	46039;46040;46041;46042	62645;62646;62647	62647			3	
DGFQPSR	0	Unmodified	805.37187	0.37186616	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.07	4					4	1			2	2	3	2	14.864	9.4288	2	0.0033041	7043	160513_QHF_FH_JSI11Kac_3	100.75	80.908			0.90621	0.95791	30.074	9	0	Median	1.6692	1.3385	8.2303	2	0	Median	0.82003	0.95206	0.86699	2	0	Median	1.29	1.2524	17.464	3	0	Plateau	0.57356	0.61162	2.4756	2	0	Median	1459600000	730290000	729340000	362050000	129140000	232910000	383530000	191950000	191570000	394130000	208520000	185610000	319930000	200680000	119250000	7410	793	7000	46043;46044;46045;46046;46047;46048;46049;46050;46051	62648;62649;62650;62651;62652;62653;62654;62655;62656;62657;62658;62659;62660;62661	62652			14	
DGFSKSMVNTKPEK	3	Acetyl (K)	1608.7818	0.78175731	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	51.003	40.493	3	0.006685	23277	160513_QHF_FH_JSI12Kac_4	58.079	38.325			0.64691	0.63084	25.607	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86415	1.0358	NaN	1	0	Median	0.64691	0.63084	NaN	1	0	Median	0.67842	0.72362	NaN	1	0	Median	17040000	10587000	6453100	0	0	0	4377100	2243600	2133500	7465200	4974600	2490600	5197500	3368500	1829000	7411	2738	7001	46052;46053;46054	62662;62663;62664	62664	2655		3	
DGFVALSK	1	Unmodified	835.44397	0.44396847	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	44.392	41.998	2	0.0021479	37091	160511_QHF_FH_JSI9i_1	82.279	37.512			0.93551	0.97574	42.424	5	3	Median	2.068	1.711	NaN	1	0	Median	1.1823	1.374	66.405	2	2	Median	0.93551	0.90829	NaN	1	1	Median	0.9331	0.97574	NaN	1	0	Median	1198000000	516790000	681240000	190410000	63326000	127080000	408410000	175880000	232520000	359780000	157390000	202390000	239430000	120190000	119240000	7412	3828	7002	46055;46056;46057;46058;46059	62665;62666;62667;62668;62669;62670;62671;62672;62673	62670			9	
DGFVTVDELK	1	Unmodified	1121.5605	0.56045479	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	65.436	61.875	2	7.0163E-08	54707	160511_QHF_FH_JSI9i_1	123.86	101.12			1.0155	1.0611	14.152	6	0	Median	1.3883	1.1438	NaN	1	0	Median	0.88345	1.0555	10.524	2	0	Median	1.0966	1.0611	3.6785	2	0	Median	0.73108	0.78417	NaN	1	0	Median	2592100000	1232700000	1359400000	778690000	344920000	433760000	692330000	321130000	371200000	716500000	318320000	398190000	404620000	248340000	156280000	7413	388	7003	46060;46061;46062;46063;46064;46065	62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686	62684			13	
DGGAWGTEQR	0	Unmodified	1075.4683	0.46828574	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.11	5					4	1			2	3	2	3	19.677	15.365	2	4.1685E-09	13646	160511_QHF_FH_JSI10i_1	186.16	165.6			1.0906	1.0987	25.824	9	6	Median	1.3602	1.073	NaN	1	1	Median	0.98227	1.144	20.158	3	2	Median	1.1332	1.1083	1.234	2	1	Median	1.0906	1.1602	32.432	3	2	Plateau	4704200000	1918700000	2785600000	1077100000	229940000	847160000	1444500000	698170000	746290000	1252400000	537830000	714590000	930250000	452730000	477520000	7414	926	7004	46066;46067;46068;46069;46070;46071;46072;46073;46074;46075	62687;62688;62689;62690;62691;62692;62693;62694;62695;62696;62697;62698	62691			12	
DGGGENTEEAQPQPQPQPQPQAQSQPPSSNK	1	Unmodified	3255.4665	0.46645442	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.708	28.146	3	0.00022491	25198	160511_QHF_FH_JSI12i_1	44.721	42.469			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7415	2570	7005	46076	62699	62699			1	
DGGILPR	0	Unmodified	726.40244	0.40243801	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		21.569	14.12	2	0.045009	9326	160513_QHF_FH_JSI11Kac_3	54.525	54.525			0.63701	0.67969	133.26	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5068	1.744	NaN	1	0	Median	0.2693	0.2649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26235000	17523000	8711900	0	0	0	6507100	2416700	4090400	19728000	15106000	4621500	0	0	0	7416	661	7006	46077;46078	62700	62700			1	
DGGNPFAEPSELDNPFQDPAVIQHRPSR	0	Unmodified	3089.4591	0.45912462	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	1		By MS/MS			2	0		2									2			80.712	80.024	3;4	3.4931E-06	71093	160511_QHF_FH_JSI10i_2	54.605	54.605			0.88287	1.0979	5.2145	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88287	1.0979	5.2145	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50039000	21268000	28771000	0	0	0	50039000	21268000	28771000	0	0	0	0	0	0	7417	210	7007	46079;46080	62701;62702	62701			2	
DGGNQEVEIAR	0	Unmodified	1186.5578	0.55782903	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.402	21.086	2	5.1444E-10	18402	160511_QHF_FH_JSI12i_1	161.67	138.93			0.78728	0.78292	8.7593	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85927	0.83295	NaN	1	1	Median	0.72132	0.7359	NaN	1	0	Median	164360000	88305000	76052000	0	0	0	0	0	0	80778000	43414000	37364000	83579000	44891000	38688000	7418	1043	7008	46081;46082	62703;62704	62704			2	
DGGPNVK	1	Unmodified	685.3395	0.3395034	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.6838	5.5787	2	0.035999	3390	160511_QHF_FH_JSI11i_1	49.358	8.7858			0.55989	0.54345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55989	0.54345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104720000	51638000	53084000	0	0	0	0	0	0	104720000	51638000	53084000	0	0	0	7419	3685	7009	46083	62705	62705			1	
DGGPVTSQESGQK	1	Unmodified	1288.5895	0.58952309	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.501	9.7128	2	5.5769E-05	7213	160511_QHF_FH_JSI9i_1	76.332	55.462			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7420	4530	7010	46084	62706	62706			1	
DGGSGNSTIIVSR	0	Unmodified	1261.6262	0.62624295	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.3	0.471					2	1				1	1	1		26.045	12.862	2	0.0030703	5996	160513_QHF_FH_JSI9Kac_3	74.46	58.831			1.2651	1.1731	32.74	2	1	Median	1.9327	1.4787	NaN	1	1	Median	0.82815	0.93064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20969000	7462300	13507000	19057000	6404200	12652000	1912800	1058100	854770	0	0	0	0	0	0	7421	3290	7011	46085;46086;46087	62707;62708;62709	62708			3	
DGGVQACFSR	0	Unmodified	1095.4767	0.47674194	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.2	1					3					1	2	1	32.757	26.213	2	0.001577	15372	160513_QHF_FH_JSI11Kac_3	79.974	62.878			0.9664	0.9786	7.5051	4	1	Median	NaN	NaN	NaN	0	0	Median	0.94373	1.1245	NaN	1	0	Median	0.99332	0.95999	0.31554	2	1	Median	0.91355	0.99536	NaN	1	0	Median	87827000	31248000	56579000	0	0	0	2512900	1293800	1219200	81811000	28320000	53491000	3502800	1634200	1868600	7422	915	7012	46088;46089;46090;46091	62710;62711;62712;62713	62711			4	
DGHPVVVNILIGR	0	Unmodified	1387.7936	0.79358305	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.474	70.997	2	0.04617	58315	160511_QHF_FH_JSI9i_3	45.137	26.357			0.41188	0.34046	NaN	1	1	Median	0.41188	0.34046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22512000	14700000	7812000	22512000	14700000	7812000	0	0	0	0	0	0	0	0	0	7423	10	7013	46092	62714	62714			1	
DGIDDESYGQIFKPIISK	2	Unmodified	2024.0102	0.01023692	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		85.339	84.974	3	0.00020661	77484	160511_QHF_FH_JSI11i_1	58.024	48.761			0.57632	0.54991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57632	0.54991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38599000	26173000	12426000	0	0	0	0	0	0	38599000	26173000	12426000	0	0	0	7424	3882	7014	46093	62715;62716	62715			2	
DGIEFAFK	1	Unmodified	925.45453	0.45453316	3521;3784	Q8N3U4;Q8WVM7	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	66.634	66.029	2	0.00078223	58741	160511_QHF_FH_JSI9i_1	98.299	77.145			1.212	1.0439	28.746	5	4	Median	1.2714	1.0439	NaN	1	0	Median	0.59799	0.71292	NaN	1	1	Median	1.212	1.1844	NaN	1	1	Median	0.96332	1.0064	43.362	2	2	Median	213300000	101750000	111550000	33962000	13366000	20597000	44489000	25032000	19458000	57560000	20278000	37282000	77288000	43078000	34211000	7425	3521;3784	7015	46094;46095;46096;46097;46098	62717;62718;62719;62720;62721;62722;62723	62723			7	
DGIEPMWEDEK	1	Unmodified	1347.5653	0.56528217	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.131	57.479	2	2.7942E-07	52134	160511_QHF_FH_JSI12i_1	120.68	116.23			0.94077	1.0036	20.386	4	0	Median	1.5461	1.2675	NaN	1	0	Median	0.8141	0.94508	NaN	1	0	Median	1.0871	1.0658	NaN	1	0	Median	0.73752	0.7808	NaN	1	0	Median	739610000	375490000	364120000	138480000	59715000	78760000	208560000	117760000	90798000	186820000	93802000	93016000	205760000	104220000	101550000	7426	853	7016	46099;46100;46101;46102	62724;62725;62726;62727;62728;62729;62730	62726			7	
DGIISDIFDKK	2	Unmodified	1249.6554	0.65541781	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		74.356	74.356	3	0.0090358	66373	160511_QHF_FH_JSI11i_3	41.242	22.462			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7427	1162	7017	46103	62731	62731			1	
DGIIVLK	1	Unmodified	756.47454	0.47454032	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	52.148	51.528	2	0.016664	45776	160511_QHF_FH_JSI9i_1	62.714	28.976			1.1367	1.2376	47.2	5	2	Median	1.5122	1.2376	NaN	1	0	Median	1.1367	1.3279	NaN	1	0	Median	0.92075	0.89184	69.158	2	2	Median	0.56142	0.59256	NaN	1	0	Median	267000000	132900000	134100000	52959000	20165000	32793000	57193000	27524000	29669000	120920000	60144000	60773000	35929000	25068000	10861000	7428	1005	7018	46104;46105;46106;46107;46108	62732;62733;62734;62735;62736;62737;62738;62739	62739			8	
DGIPVSSEAERHELGK	1	Unmodified	1722.8537	0.8536767	5501	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	35.738	35.088	3	0.00063392	30577	160511_QHF_FH_JSI11i_3	66.965	57.929			0.96163	0.91117	31.376	6	3	Median	1.1401	0.95989	NaN	1	0	Median	1.0296	1.2203	NaN	1	1	Median	0.89165	0.84484	11.29	2	1	Median	0.63042	0.65899	45.224	2	1	Median	280880000	135040000	145840000	40359000	13547000	26813000	50339000	25222000	25117000	114270000	51975000	62295000	75916000	44297000	31619000	7429	5501	7019	46109;46110;46111;46112;46113;46114	62740;62741;62742;62743;62744	62740			5	
DGIQLSEYLPEVK	1	Unmodified	1489.7664	0.76642482	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	90.344	89.921	2	9.0886E-07	81522	160511_QHF_FH_JSI10i_1	128.88	111.41			0.86014	0.90682	34.053	4	1	Median	1.5778	1.3347	NaN	1	1	Median	0.70173	0.81737	NaN	1	0	Median	1.0543	1.0061	NaN	1	0	Median	0.56632	0.59526	NaN	1	0	Median	146870000	74152000	72718000	29972000	11052000	18920000	48219000	26759000	21460000	38613000	18452000	20160000	30067000	17888000	12178000	7430	3765	7020	46115;46116;46117;46118	62745;62746;62747;62748;62749;62750;62751;62752	62750			8	
DGIVLGADTR	0	Unmodified	1015.5298	0.52982336	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	42.021	37.746	2	4.2007E-14	34041	160511_QHF_FH_JSI10i_1	160.82	106.27			0.94974	0.96399	25.281	7	0	Median	1.3009	1.0528	NaN	1	0	Median	0.90616	1.0686	14.573	2	0	Median	0.9935	0.97471	7.5749	2	0	Median	0.59975	0.63629	14.112	2	0	Median	2407000000	1179700000	1227300000	399820000	142940000	256870000	777860000	427310000	350550000	700430000	291740000	408690000	528890000	317700000	211190000	7431	4267	7021	46119;46120;46121;46122;46123;46124;46125	62753;62754;62755;62756;62757;62758;62759;62760;62761;62762;62763;62764	62760			12	
DGIVMPTNPK	1	Unmodified	1070.543	0.54303059	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.124	40.751	2	0.0022957	37236	160511_QHF_FH_JSI12i_1	64.04	39.521			0.77805	0.83385	10.882	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66343	0.77209	NaN	1	1	Median	0.91246	0.90054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	313640000	218290000	95350000	0	0	0	137080000	93375000	43703000	176560000	124910000	51648000	0	0	0	7432	5701	7022	46126;46127;46128;46129	62765;62766;62767;62768	62766			4	
DGIVPFLQVFGHGK	1	Unmodified	1512.8089	0.80889876	5704	Q9Y666	SLC12A7	Solute carrier family 12 member 7	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.27	100.28	3	8.0437E-05	86893	160511_QHF_FH_JSI12i_3	79.089	73.595			0.68387	0.69198	51.223	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0275	0.99402	NaN	1	0	Median	0.45515	0.48172	NaN	1	0	Median	22171000	14196000	7975300	0	0	0	0	0	0	9054400	5130300	3924100	13117000	9065800	4051200	7433	5704	7023	46130;46131	62769;62770;62771;62772	62772			4	
DGKLDFEEFMK	2	Unmodified	1357.6224	0.62240312	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	74.502	73.641	2;3	2.2125E-07	65000	160511_QHF_FH_JSI9i_2	114.82	96.404			0.91855	0.98974	12.13	4	0	Median	1.2566	1.0543	NaN	1	0	Median	0.75663	0.92913	NaN	1	0	Median	1.1107	1.1192	NaN	1	0	Median	0.75963	0.85568	NaN	1	0	Median	180040000	91999000	88037000	34630000	17761000	16869000	34770000	20592000	14178000	61455000	27729000	33726000	49182000	25917000	23265000	7434	3071	7024	46132;46133;46134;46135;46136	62773;62774;62775;62776;62777;62778;62779;62780;62781	62776			9	
DGKLDKDEIR	2	Unmodified	1187.6146	0.61461563	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	2	By matching	By MS/MS	By MS/MS		3	0			4							1	1	2		13.254	12.702	2;3	0.013347	10122	160511_QHF_FH_JSI11i_3	47.334	23.043			0.61183	0.5716	32.361	3	0	Median	0.49232	0.39897	NaN	1	0	Median	0.67446	0.76107	NaN	1	0	Median	0.61183	0.5716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236710000	143460000	93247000	36181000	17939000	18242000	40641000	21927000	18714000	159890000	103600000	56291000	0	0	0	7435	2652	7025	46137;46138;46139;46140	62782;62783	62782			2	
DGKLPFCAMGVSSVIHPK	2	Unmodified	1941.9805	0.98047389	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.249	72.954	4	0.017791	63278	160511_QHF_FH_JSI12i_3	35.304	28.414			3.631	3.7711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.631	3.7711	NaN	1	1	Median	17484000	7029900	10454000	0	0	0	0	0	0	0	0	0	17484000	7029900	10454000	7436	1456	7026	46141	62784	62784			1	
DGKLVSESSDVLPK	2	Acetyl (K)	1514.7828	0.78280317	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS		By MS/MS	12.2	0.433					3	1					3		1	70.114	60.762	2	0.00062982	25674	160513_QHF_FH_JSI10Kac_2	101.95	60.671		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3990600	1234900	2755800	0	0	0	2772200	1234900	1537300	0	0	0	1218400	0	1218400	7437	51	7027	46142;46143;46144;46145	62785;62786;62787;62788	62785	22		4	
DGKPLLPK	2	Unmodified	866.52255	0.52255314	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	21.728	21.342	3	0.02014	18414	160511_QHF_FH_JSI10i_1	43.808	16.554			0.20378	0.21689	33.337	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14963	0.17135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27752	0.27455	NaN	1	1	Median	24602000	21403000	3198900	0	0	0	13975000	12397000	1578000	0	0	0	10626000	9005500	1620900	7438	1181	7028	46146;46147	62789;62790	62790			2	
DGKPLLPK	2	Acetyl (K)	908.53312	0.53311783	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		52.054	42.623	2	0.038901	23303	160513_QHF_FH_JSI11Kac_3	52.403	36.259			0.82512	0.87993	73.627	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2532	1.481	NaN	1	0	Median	0.54328	0.52281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7375100	4759200	2615900	0	0	0	3020400	1688400	1332000	4354700	3070800	1283900	0	0	0	7439	1181	7028	46148;46149	62791;62792	62791			2	
DGKPVQPVK	2	Acetyl (K)	1008.5604	0.56039521	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	30.597	22.332	2	0.0088029	10716	160513_QHF_FH_JSI10Kac_2	63.565	49.408			1.036	0.96194	39.715	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0509	1.2541	NaN	1	0	Median	1.036	0.96194	NaN	1	0	Median	0.54917	0.57431	NaN	1	0	Median	18011000	10724000	7287300	0	0	0	5745300	2690000	3055300	4173000	2285400	1887600	8092600	5748200	2344400	7440	4182	7029	46150;46151;46152	62793;62794;62795	62794	3071		3	
DGKPVQPVKR	2	Acetyl (K)	1164.6615	0.66150624	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	1	0	0	2		By MS/MS			14	0							1				1			23.839	14.165	3	0.042162	9801	160513_QHF_FH_JSI10Kac_4	42.001	31.477			0.69257	0.81569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69257	0.81569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7277000	3473500	3803500	0	0	0	7277000	3473500	3803500	0	0	0	0	0	0	7441	4182	7030	46153	62796	62796	3071		1	
DGKYSQVLANGLDNK	2	Acetyl (K)	1662.8213	0.82131394	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						6					2	1	3	72.441	63.851	2;3	9.9177E-05	32045	160513_QHF_FH_JSI12Kac_3	88.561	75.684			0.88955	1.0617	126.65	5	1	Median	NaN	NaN	NaN	0	0	Median	0.91901	1.0863	3.245	2	0	Median	NaN	NaN	NaN	0	0	Median	0.31041	0.33587	179.04	3	1	Plateau	20398000	12481000	7917100	0	0	0	8113600	4393800	3719800	772180	772180	0	11513000	7315300	4197400	7442	1993	7031	46154;46155;46156;46157;46158;46159	62797;62798;62799;62800;62801;62802	62798	2019		6	
DGLAFNALIHR	0	Unmodified	1225.6568	0.65675521	361;4665	O43707;Q9H254	ACTN4;SPTBN4	Alpha-actinin-4;Spectrin beta chain, non-erythrocytic 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	4	5	4	3	69.406	67.142	2;3	6.9531E-21	58283	160511_QHF_FH_JSI12i_3	169.37	153.74			0.62439	0.65768	50.633	16	2	Median	0.56405	0.47777	22.93	4	1	Median	0.49579	0.59817	27.446	5	1	Median	1.8114	1.5782	11.006	4	0	Linear	0.6968	0.70137	5.7762	3	0	Plateau	2177600000	1076900000	1100700000	203900000	125630000	78265000	342990000	234310000	108680000	1025700000	372680000	653030000	605040000	344300000	260740000	7443	361;4665	7032	46160;46161;46162;46163;46164;46165;46166;46167;46168;46169;46170;46171;46172;46173;46174;46175	62803;62804;62805;62806;62807;62808;62809;62810;62811;62812;62813;62814;62815;62816;62817;62818;62819;62820;62821;62822;62823;62824;62825;62826;62827;62828	62826			24	
DGLEMEK	1	Unmodified	820.36367	0.36366924	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.16	5	1				1				2	3	1	1	22.17	20.373	2	0.0034852	17556	160511_QHF_FH_JSI11i_1	104.21	83.654			1.1611	1.1476	85.106	6	3	Median	0.93467	0.76655	NaN	1	1	Median	1.8863	2.1898	86.396	3	2	Median	1.4425	1.3816	NaN	1	0	Median	0.45754	0.48617	NaN	1	0	Median	3103500000	1562000000	1541500000	707940000	322660000	385290000	556650000	131750000	424900000	991340000	546240000	445100000	847600000	561400000	286200000	7444	1036	7033	46176;46177;46178;46179;46180;46181;46182	62829;62830;62831;62832;62833;62834;62835	62829			7	
DGLEMEK	1	Oxidation (M)	836.35858	0.35858386	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	17.9	14.9	2	0.020727	4513	160513_QHF_FH_JSI11Kac_3	64.567	49.186			0.85857	0.78958	22.24	3	0	Plateau	0.806	0.66653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0322	1.0134	NaN	1	0	Median	0.91457	0.93536	NaN	1	0	Median	380290000	190820000	189470000	196880000	91178000	105700000	0	0	0	8943000	4120400	4822600	174460000	95521000	78944000	7445	1036	7033	46183;46184;46185	62836;62837	62837		649	2	
DGLGFCALIHR	0	Unmodified	1257.6288	0.6288259	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		69.116	68.135	2;3	0.00034543	57185	160511_QHF_FH_JSI10i_3	88.948	77.728			1.2184	1.1331	26.229	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.6352	0.74283	4.5775	2	1	Median	1.2871	1.166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80446000	39790000	40656000	0	0	0	27644000	19433000	8210500	52802000	20357000	32445000	0	0	0	7446	1021	7034	46186;46187;46188	62838;62839	62839			2	
DGLGGLPDIVR	0	Unmodified	1110.6033	0.60332266	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	1	2	75.721	71.874	2	2.4969E-05	66808	160511_QHF_FH_JSI12i_1	100.48	91.518			0.8029	0.85266	23.451	6	1	Median	1.3957	1.1435	NaN	1	0	Median	0.71631	0.82518	25.841	2	1	Median	0.96874	0.95165	NaN	1	0	Median	0.66699	0.69073	14.251	2	0	Median	802670000	417420000	385250000	171010000	73959000	97048000	207850000	112510000	95339000	243910000	130190000	113720000	179900000	100760000	79144000	7447	1573	7035	46189;46190;46191;46192;46193;46194	62840;62841;62842;62843;62844;62845	62841			4	
DGLGGLPDIVRDR	0	Unmodified	1381.7314	0.73137672	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			66.406	65.537	3	0.02369	58218	160511_QHF_FH_JSI10i_2	38.799	17.448			1.27	1.3058	11.353	2	2	Median	1.6436	1.415	NaN	1	1	Median	0.98137	1.2051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36725000	16537000	20188000	11782000	4393100	7389000	24943000	12144000	12799000	0	0	0	0	0	0	7448	1573	7036	46195;46196	62846;62847	62847			2	
DGLGSDNIGSR	0	Unmodified	1089.5051	0.50506518	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.094	21.591	2	0.002794	18940	160511_QHF_FH_JSI12i_1	71.03	55.388			0.73869	0.76391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73869	0.76391	NaN	1	1	Median	41635000	24073000	17562000	0	0	0	0	0	0	0	0	0	41635000	24073000	17562000	7449	2140	7037	46197	62848	62848			1	
DGLIIRK	1	Unmodified	813.50724	0.50723743	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			24.217	22.961	2	0.027002	18775	160511_QHF_FH_JSI10i_3	66.087	11.301			1.1629	1.3787	104.74	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1629	1.3787	104.74	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152110000	68342000	83766000	0	0	0	152110000	68342000	83766000	0	0	0	0	0	0	7450	2129	7038	46198;46199	62849;62850	62849			2	
DGLILTSR	0	Unmodified	873.49198	0.4919813	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			1	4	4	4	45.115	40.155	2	3.4285E-07	22947	160513_QHF_FH_JSI11Kac_4	143.61	74.227			0.88802	0.99662	27.697	13	1	Median	1.8478	1.4796	NaN	1	0	Median	0.95006	1.1194	23.001	4	0	Median	1.0243	1.0098	13.975	4	0	Median	0.70093	0.7649	20.154	4	1	Median	5355000000	2801400000	2553600000	942080000	359340000	582740000	1562900000	917900000	644960000	1568700000	743760000	824960000	1281300000	780400000	500890000	7451	4276	7039	46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212	62851;62852;62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863;62864;62865;62866;62867;62868;62869;62870;62871;62872	62863			22	
DGLIPLEIR	0	Unmodified	1024.5917	0.59169534	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.74	4	4					2	1		2	3	2	4	80.983	77.666	2	1.4006E-05	70000	160511_QHF_FH_JSI11i_2	109.71	98.841			0.88679	1.0631	24.509	10	1	Median	1.6007	1.3699	7.6042	2	0	Median	0.85957	1.0751	3.2771	3	0	Plateau	1.1109	1.091	2.7834	2	0	Median	0.74686	0.78491	8.3751	3	1	Plateau	726410000	351900000	374510000	140130000	49938000	90193000	217720000	115810000	101910000	213200000	91963000	121240000	155350000	94188000	61162000	7452	2374	7040	46213;46214;46215;46216;46217;46218;46219;46220;46221;46222;46223	62873;62874;62875;62876;62877;62878;62879;62880;62881;62882;62883;62884;62885;62886;62887	62883			15	
DGLITPTIAPNGAQVLQVK	1	Unmodified	1934.0837	0.083676635	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.742	87.274	2;3	0.00063957	79253	160511_QHF_FH_JSI10i_1	64.55	31.604			1.5559	1.5094	54.297	2	2	Median	2.5201	2.2158	NaN	1	1	Median	0.96061	1.0281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15005000	3890100	11115000	5336600	1193200	4143400	9668600	2696900	6971700	0	0	0	0	0	0	7453	3307	7041	46224;46225;46226;46227	62888;62889;62890;62891	62890			4	
DGLIVYEDSPLVK	1	Unmodified	1446.7606	0.76061116	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				79.295	78.423	2	0.0025866	69707	160511_QHF_FH_JSI9i_1	66.289	49.715			1.2343	1.0083	NaN	1	1	Median	1.2343	1.0083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10018000	5641500	4376600	10018000	5641500	4376600	0	0	0	0	0	0	0	0	0	7454	15	7042	46228	62892	62892			1	
DGLLDDEEFALANHLIK	1	Unmodified	1911.9578	0.95780742	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	99.422	99.18	3	0.0056764	85242	160511_QHF_FH_JSI12i_2	43.592	40.057			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7455	4727	7043	46229	62893	62893			1	
DGLLENQTPEFFQDVCKPK	2	Unmodified	2264.0783	0.078333261	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	80.756	80.147	3	1.07E-13	73076	160511_QHF_FH_JSI12i_1	146.81	133.77			0.81542	0.86301	24.305	6	2	Median	1.0556	0.89088	NaN	1	0	Median	0.73136	0.83602	NaN	1	0	Median	0.89296	0.88791	21.667	2	1	Median	0.63163	0.69552	41.841	2	1	Median	547200000	290030000	257170000	30409000	13691000	16719000	118070000	56983000	61088000	241150000	141500000	99653000	157570000	77861000	79708000	7456	1650	7044	46230;46231;46232;46233;46234;46235	62894;62895;62896;62897;62898;62899;62900;62901;62902;62903	62897			10	
DGLLIIGVHSAK	1	Unmodified	1221.7081	0.70812208	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.481								4	7	4	3	2	2	70.393	60.764	2;3	6.0903E-06	33267	160513_QHF_FH_JSI10Kac_6	95.17	76.038			0.99272	1.1777	34.654	11	5	Median	1.6729	1.3919	45.528	4	2	Median	1.1585	1.3529	30.453	3	1	Plateau	1.0316	0.99885	29.097	2	1	Median	0.78141	0.84167	32.143	2	1	Median	299410000	132190000	167220000	86645000	27261000	59384000	72976000	30290000	42686000	115450000	59275000	56173000	24338000	15359000	8978300	7457	3588	7045	46236;46237;46238;46239;46240;46241;46242;46243;46244;46245;46246	62904;62905;62906;62907;62908;62909;62910;62911;62912;62913;62914;62915;62916;62917	62917			14	
DGLLPENTFIVGYAR	0	Unmodified	1663.857	0.85697116	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	3	2	93.702	93.35	2;3	1.3512E-14	84798	160511_QHF_FH_JSI12i_1	158.41	142.87			1.1721	1.1794	30.442	10	0	Median	1.6909	1.4377	2.8276	2	0	Median	0.93098	1.1034	27.546	3	0	Plateau	1.1897	1.2437	32.795	3	0	Median	0.75779	0.8156	9.6454	2	0	Median	1341900000	695110000	646820000	186440000	71913000	114530000	483980000	264940000	219040000	328460000	151330000	177130000	343040000	206920000	136120000	7458	1000	7046	46247;46248;46249;46250;46251;46252;46253;46254;46255;46256	62918;62919;62920;62921;62922;62923;62924;62925;62926;62927;62928;62929;62930;62931;62932;62933;62934;62935;62936;62937;62938;62939;62940;62941	62926			24	
DGLQLLTDMKK	2	Unmodified	1260.6748	0.67477304	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	66.212	65.282	3	0.02064	56174	160511_QHF_FH_JSI12i_2	35.523	27.419			0.067681	0.071644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.067681	0.071644	NaN	1	1	Median	13114000	12744000	369520	0	0	0	0	0	0	5640000	5640000	0	7473900	7104400	369520	7459	477	7047	46257;46258	62942;62943	62942			2	
DGLQNEKNIVSTPVK	2	Acetyl (K)	1682.8839	0.88391419	1448	P35914	HMGCL	Hydroxymethylglutaryl-CoA lyase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.693				3	15	6	1				12	3	10	67.712	58.229	2;3	1.3836E-15	25469	160513_QHF_FH_JSI12Kac_2	141.38	108.38			0.84215	0.92029	51.858	17	0	Median	NaN	NaN	NaN	0	0	Median	0.76432	0.88644	47.274	8	0	Median	1.2815	1.2641	44.89	2	0	Median	0.86193	0.882	50.823	7	0	Median	1135000000	530800000	604150000	0	0	0	198870000	104570000	94309000	22318000	7939900	14378000	913760000	418300000	495460000	7460	1448	7048	46259;46260;46261;46262;46263;46264;46265;46266;46267;46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282;46283	62944;62945;62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958;62959;62960;62961;62962;62963;62964;62965;62966;62967	62967	1429		23	
DGLSEAAAQSR	0	Unmodified	1103.5207	0.52071524	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				1	2	3	4	20.075	17.628	2	8.1247E-10	15091	160511_QHF_FH_JSI9i_1	137.46	118.92			0.85704	0.84994	28.233	7	5	Median	1.4788	1.2112	NaN	1	0	Median	0.94477	1.0959	NaN	1	1	Median	1.0102	0.97627	21.961	2	1	Median	0.65059	0.67136	19.83	3	3	Median	693020000	362840000	330180000	123690000	46181000	77507000	162940000	86334000	76604000	159750000	79897000	79849000	246640000	150430000	96216000	7461	2346	7049	46284;46285;46286;46287;46288;46289;46290;46291;46292;46293	62968;62969;62970;62971;62972;62973;62974;62975;62976;62977;62978;62979	62977			12	
DGLTDVYNK	1	Unmodified	1023.4873	0.48728985	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	2	3	39.801	34.558	2	1.9574E-08	31201	160511_QHF_FH_JSI10i_1	151.04	131.33			1.0841	1.1431	38.034	9	2	Median	1.3998	1.1431	NaN	1	0	Median	1.1358	1.3718	43.229	3	1	Median	1.1085	1.0849	6.1353	2	0	Median	0.67758	0.71847	28.469	3	1	Plateau	2175900000	1149200000	1026700000	442790000	163080000	279710000	632480000	368670000	263810000	660480000	345520000	314950000	440200000	271920000	168270000	7462	1249	7050	46294;46295;46296;46297;46298;46299;46300;46301;46302	62980;62981;62982;62983;62984;62985;62986;62987;62988;62989;62990;62991;62992;62993;62994;62995;62996	62988			17	
DGLTISFTK	1	Unmodified	980.51786	0.51786169	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	61.657	60.949	2	0.00018662	55022	160511_QHF_FH_JSI10i_1	86.136	70.696			0.7422	0.83464	51.271	3	1	Median	2.1521	1.794	NaN	1	1	Median	0.7422	0.83464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64732	0.67752	NaN	1	0	Median	86327000	47331000	38996000	23237000	8332500	14905000	32660000	19743000	12918000	0	0	0	30429000	19256000	11174000	7463	3921	7051	46303;46304;46305	62997;62998;62999	62998			3	
DGLTNAGELESDSGSDK	1	Unmodified	1693.7279	0.72786706	1423	P35226	BMI1	Polycomb complex protein BMI-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.267	37.051	2	1.0642E-07	32736	160511_QHF_FH_JSI9i_1	99.941	84.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7464	1423	7052	46306	63000	63000			1	
DGLVPMFINTHSGLFTHLGVFTLGAR	0	Unmodified	2799.453	0.45304037	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		96.939	87.532	3	5.9768E-10	49856	160513_QHF_FH_JSI11Kac_6	123.83	111.51			1.4094	1.3422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4094	1.3422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	129420000	36906000	92514000	0	0	0	0	0	0	129420000	36906000	92514000	0	0	0	7465	5374	7053	46307	63001	63001			1	
DGLVSLLTTSEGADEPQR	0	Unmodified	1886.9222	0.92215019	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	80.851	80.333	2	3.9149E-16	71414	160511_QHF_FH_JSI9i_1	159.08	145.18			1.1426	1.02	19.115	4	2	Median	1.3544	1.0892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1426	1.0789	17.216	2	2	Median	0.75939	0.78087	NaN	1	0	Median	99624000	49803000	49822000	19911000	7310000	12601000	0	0	0	48688000	23068000	25620000	31025000	19424000	11600000	7466	1739	7054	46308;46309;46310;46311	63002;63003;63004;63005;63006;63007;63008	63007			7	
DGLWAVLAWLSILATRK	1	Unmodified	1912.0935	0.09345346	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			103.37	95.909	3	1.9377E-16	57786	160513_QHF_FH_JSI10Kac_6	188.27	178.48			0.64127	0.63672	0.22578	2	2	Median	0.76031	0.63774	NaN	1	1	Median	0.54087	0.63571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1076700000	638960000	437740000	181060000	102020000	79048000	895640000	536940000	358690000	0	0	0	0	0	0	7467	1460	7055	46312;46313	63009;63010	63010			2	
DGMAFNALIHK	1	Unmodified	1215.607	0.60702783	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	62.519	61.538	3	0.00015371	54062	160511_QHF_FH_JSI9i_2	82.171	72.982			0.67897	0.79985	84.016	5	5	Median	0.47587	0.40949	NaN	1	1	Median	0.67897	0.79985	NaN	1	1	Median	1.601	1.5916	NaN	1	1	Median	0.79778	0.85543	137.75	2	2	Median	106440000	51607000	54832000	22980000	7226100	15754000	16739000	9218600	7520100	26749000	10723000	16026000	39971000	24439000	15532000	7468	2162	7056	46314;46315;46316;46317;46318;46319;46320	63011;63012;63013;63014;63015;63016;63017	63013			7	
DGMDNQGGYGSVGR	0	Unmodified	1411.5786	0.57864083	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	23.466	22.922	2	2.2061E-65	20164	160511_QHF_FH_JSI12i_1	226.73	219.09			0.82326	0.79686	33.792	4	0	Median	1.1622	0.95076	NaN	1	0	Median	0.58316	0.66787	NaN	1	0	Median	1.1696	1.1596	NaN	1	0	Median	0.52508	0.54853	NaN	1	0	Median	507340000	282540000	224800000	90578000	33141000	57436000	117350000	73390000	43963000	134750000	69639000	65111000	164660000	106370000	58293000	7469	1382	7057	46321;46322;46323;46324;46325	63018;63019;63020;63021;63022;63023;63024	63020			7	
DGMDNQGGYGSVGR	0	Oxidation (M)	1427.5736	0.57355545	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	23.502	22.949	2	0.0001344	19594	160511_QHF_FH_JSI9i_1	113.22	112.16			1.4012	1.1865	46.172	3	1	Median	1.4012	1.1865	NaN	1	0	Median	2.1884	2.447	NaN	1	0	Median	1.0645	1.037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84551000	35810000	48741000	29764000	10313000	19451000	20211000	8361100	11850000	34576000	17136000	17440000	0	0	0	7470	1382	7057	46326;46327;46328;46329;46330;46331	63025;63026;63027;63028;63029;63030;63031	63029		1018	7	
DGMVSFHDNPEK	1	Unmodified	1374.5874	0.5874146	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	3	9								3	3	2	4	31.946	31.078	2;3	1.1089E-05	27212	160511_QHF_FH_JSI10i_2	117.67	101.04			0.85551	0.9919	38.919	11	3	Median	1.4977	1.2529	29.489	3	2	Plateau	0.81122	1.0079	12.863	3	0	Median	1.713	1.7153	1.5981	2	0	Median	0.52848	0.57782	13.258	3	1	Median	549600000	289470000	260130000	110330000	54632000	55702000	134620000	78630000	55991000	187430000	80260000	107170000	117210000	75943000	41270000	7471	5448	7058	46332;46333;46334;46335;46336;46337;46338;46339;46340;46341;46342;46343	63032;63033;63034;63035;63036;63037;63038;63039;63040;63041;63042	63042			10	
DGNASGTTLLEALDCILPPTRPTDK	1	Unmodified	2654.3221	0.32214536	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	4	8	6							2	4	7	5	101.79	101.71	2;3;4	1.0436E-241	90875	160511_QHF_FH_JSI11i_3	386.52	354.69			0.91901	0.93876	23.363	18	1	Median	1.5997	1.3523	23.017	2	1	Median	1.0025	1.1709	10.144	4	0	Median	0.8333	0.8337	14.553	7	0	Median	0.86839	0.93738	16.564	5	0	Median	14263000000	7405500000	6857600000	831900000	335930000	495980000	3506500000	1841900000	1664600000	5877800000	3067900000	2809900000	4046900000	2159800000	1887100000	7472	2072	7059	46344;46345;46346;46347;46348;46349;46350;46351;46352;46353;46354;46355;46356;46357;46358;46359;46360;46361	63043;63044;63045;63046;63047;63048;63049;63050;63051;63052;63053;63054;63055;63056;63057;63058;63059;63060;63061;63062;63063;63064;63065;63066;63067;63068	63046			26	
DGNDLHMTYK	1	Unmodified	1192.5183	0.5182724	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	25.006	24.675	2	0.00038441	21640	160511_QHF_FH_JSI10i_1	76.228	69.333			1.2661	1.2285	28.303	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0928	1.2942	NaN	1	0	Median	1.2661	1.2285	NaN	1	0	Median	0.73092	0.77392	NaN	1	1	Median	273240000	141870000	131370000	0	0	0	82891000	39721000	43170000	96699000	40345000	56354000	93651000	61806000	31845000	7473	456	7060	46362;46363;46364;46365	63069;63070;63071;63072;63073	63073			5	
DGNGEVTDKPVK	2	Unmodified	1257.6201	0.62009493	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				11.112	10.324	2	0.0028631	7789	160511_QHF_FH_JSI9i_1	138.99	112.48			2.3497	1.9045	NaN	1	1	Median	2.3497	1.9045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50377000	11980000	38397000	50377000	11980000	38397000	0	0	0	0	0	0	0	0	0	7474	2493	7061	46366	63074	63074			1	
DGNGYISAAELR	0	Unmodified	1264.6048	0.60477922	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	5.91	4					4	4			1	5	3	3	55.301	48.359	2	4.6881E-42	44140	160511_QHF_FH_JSI11i_1	208.15	134.22			0.94675	1.0148	24.053	12	3	Median	1.6492	1.3819	NaN	1	0	Median	0.93681	1.1215	27.049	5	3	Median	1.052	1.0234	4.0198	3	0	Median	0.6981	0.75275	10.51	3	0	Median	11014000000	5324400000	5689200000	2926400000	1038800000	1887600000	2958700000	1615500000	1343200000	2971600000	1404400000	1567300000	2156900000	1265800000	891120000	7475	958	7062	46367;46368;46369;46370;46371;46372;46373;46374;46375;46376;46377;46378	63075;63076;63077;63078;63079;63080;63081;63082;63083;63084;63085;63086;63087;63088;63089;63090;63091;63092;63093	63076			19	
DGNIQEGDVVLK	1	Unmodified	1285.6514	0.65139506	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	44.271	43.655	2	1.0744E-05	39282	160511_QHF_FH_JSI10i_1	125.74	97.532			0.52313	0.54601	79.847	5	4	Median	0.39968	0.33251	NaN	1	1	Median	0.95378	1.1371	103.75	2	2	Median	1.4962	1.3937	NaN	1	1	Median	0.52313	0.54481	NaN	1	0	Median	272100000	146020000	126080000	44941000	28895000	16046000	113320000	61300000	52023000	67681000	28082000	39599000	46153000	27742000	18411000	7476	2253	7063	46379;46380;46381;46382;46383	63094;63095;63096;63097;63098	63097			5	
DGNLASTLGQHK	1	Unmodified	1239.6208	0.62076364	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								2	1	1	1	27.771	26.999	2	0.0002207	23854	160511_QHF_FH_JSI10i_1	79.201	58.898			1.2192	1.1838	27.246	2	0	Median	1.7051	1.4353	NaN	1	0	Median	0.87182	0.97633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93336000	59716000	33620000	37563000	15747000	21816000	33255000	21451000	11804000	13879000	13879000	0	8637900	8637900	0	7477	4568	7064	46384;46385;46386;46387;46388	63099;63100;63101;63102;63103	63101			5	
DGNPDNETYLHR	0	Unmodified	1429.6222	0.6222202	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	20.636	20.121	2;3	6.9825E-06	17314	160511_QHF_FH_JSI10i_1	121.36	117.47			0.87506	0.91849	26.207	8	0	Median	1.6838	1.3949	8.1803	2	0	Median	0.79693	0.93741	2.2045	2	0	Median	0.95197	0.91041	0.56827	2	0	Median	0.68136	0.70896	6.1549	2	0	Median	790730000	392060000	398680000	189830000	65057000	124770000	191080000	101850000	89230000	197130000	98633000	98494000	212700000	126520000	86183000	7478	5017;5423	7065	46389;46390;46391;46392;46393;46394;46395;46396	63104;63105;63106;63107;63108;63109;63110;63111;63112;63113;63114	63109			11	
DGNVLLHEMQIQHPTASLIAK	1	Oxidation (M)	2330.2053	0.20526511	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	62.534	61.785	3	0.00016349	53256	160511_QHF_FH_JSI12i_2	56.529	47.884			0.86803	0.92925	15.535	5	4	Median	NaN	NaN	NaN	0	0	Median	0.61587	0.77961	NaN	1	1	Median	1.0962	1.0441	NaN	1	0	Median	0.86803	0.75172	15.976	3	3	Plateau	157190000	91084000	66106000	0	0	0	40981000	24407000	16573000	36777000	15622000	21155000	79432000	51054000	28378000	7479	1494	7066	46397;46398;46399;46400;46401;46402	63115;63116;63117;63118;63119;63120;63121;63122	63118		1175	8	
DGNVLLHEMQIQHPTASLIAK	1	Unmodified	2314.2104	0.21035049	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		16	8							5	7	7	5	79.578	78.818	2;3;4	1.2871E-57	68042	160511_QHF_FH_JSI9i_2	213.13	201.08			0.85974	0.90214	36.969	22	10	Median	1.4939	1.2771	34.012	5	2	Median	0.69089	0.84977	29.078	6	4	Median	1.0112	1.0252	22.927	6	3	Median	0.61828	0.6466	18.849	5	1	Median	4550500000	2226600000	2323900000	713270000	213450000	499830000	1219100000	754460000	464660000	1792500000	801520000	991030000	825560000	457160000	368400000	7480	1494	7066	46403;46404;46405;46406;46407;46408;46409;46410;46411;46412;46413;46414;46415;46416;46417;46418;46419;46420;46421;46422;46423;46424;46425;46426	63123;63124;63125;63126;63127;63128;63129;63130;63131;63132;63133;63134;63135;63136;63137;63138;63139;63140;63141;63142;63143;63144;63145;63146;63147;63148;63149;63150;63151;63152;63153;63154;63155;63156;63157;63158;63159;63160;63161;63162;63163;63164	63140			42	
DGNVTCER	0	Unmodified	949.39234	0.39234361	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	1	3	3	6.5187	2.7456	2	0.0013774	3989	160511_QHF_FH_JSI12i_1	90.308	77.756			0.86956	0.86565	25.734	8	2	Median	2.0885	1.7081	NaN	1	0	Median	0.86227	1.0393	NaN	1	1	Median	0.77355	0.86537	7.8676	3	1	Plateau	0.93815	0.98767	10.603	3	0	Plateau	913340000	450020000	463310000	61616000	20456000	41160000	269320000	126470000	142850000	254960000	120920000	134040000	327440000	182170000	145270000	7481	2751	7067	46427;46428;46429;46430;46431;46432;46433;46434	63165;63166;63167;63168;63169;63170;63171;63172;63173	63167			9	
DGNVTQETK	1	Unmodified	990.4618	0.46180338	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	6.9434	6.7099	2	1.9682E-05	4563	160511_QHF_FH_JSI10i_1	120.12	68.265			0.5876	0.89645	27.126	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.47288	0.56452	NaN	1	1	Median	0.5876	0.56015	NaN	1	1	Median	0.84608	0.89954	NaN	1	0	Median	1112400000	638200000	474190000	0	0	0	53930000	38308000	15622000	38382000	24357000	14025000	1020100000	575540000	444550000	7482	3063	7068	46435;46436;46437	63174;63175;63176	63176			3	
DGPALSGPQSR	0	Unmodified	1083.5309	0.530886	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			19.931	19.223	2	0.0039102	16551	160511_QHF_FH_JSI10i_1	66.758	51.607			2.0258	1.9901	24.099	2	2	Median	2.0615	1.6783	NaN	1	1	Median	1.9907	2.3598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142670000	37130000	105540000	48280000	14635000	33645000	94386000	22495000	71892000	0	0	0	0	0	0	7483	1167	7069	46438;46439	63177;63178	63177			2	
DGPGETDAFGNSEGK	1	Unmodified	1479.6114	0.61138074	628	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.459	26.877	2	7.7021E-10	23816	160511_QHF_FH_JSI10i_1	148.13	139.64			0.87534	1.2768	12.134	4	0	Linear	1.5665	1.2887	NaN	1	0	Median	0.8509	1.0307	NaN	1	0	Median	1.3895	1.359	NaN	1	0	Median	1.2367	1.2649	NaN	1	0	Median	257980000	125460000	132520000	53274000	23722000	29551000	80667000	42337000	38330000	57296000	24226000	33070000	66743000	35179000	31565000	7484	628	7070	46440;46441;46442;46443	63179;63180;63181;63182;63183;63184;63185	63183			7	
DGPGFYTTR	0	Unmodified	1012.4614	0.46140945	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.728	29.132	2	0.001792	26081	160511_QHF_FH_JSI12i_1	67.507	59.167			0.70466	0.81971	19.931	4	0	Linear	1.5179	1.2463	NaN	1	0	Median	0.80171	0.95482	NaN	1	0	Median	1.1979	1.1804	NaN	1	0	Median	0.7699	0.80867	NaN	1	0	Median	729950000	365980000	363970000	122730000	53847000	68883000	182190000	84875000	97313000	179560000	81178000	98379000	245470000	146080000	99395000	7485	1507	7071	46444;46445;46446;46447	63186;63187;63188;63189;63190;63191	63188			6	
DGPLGFYHGLSSTLLR	0	Unmodified	1731.8944	0.8944193	5699	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			91.283	90.231	3	0.042072	75475	160511_QHF_FH_JSI10i_3	29.341	22.863			1.1752	1.3901	10.59	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1752	1.3901	10.59	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17952000	7233700	10718000	0	0	0	17952000	7233700	10718000	0	0	0	0	0	0	7486	5699	7072	46448;46449	63192;63193	63193			2	
DGPLNMILDDGGDLTNLIHTK	1	Unmodified	2251.1154	0.11544705	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.81	101.74	3	9.477E-71	89421	160511_QHF_FH_JSI11i_2	226.51	206.35			1.0562	1.1217	9.6867	6	1	Median	1.3218	1.1013	NaN	1	0	Median	1.0046	1.2412	NaN	1	0	Median	1.1819	1.1497	0.90672	2	0	Median	0.91802	0.97651	1.0512	2	1	Median	2796200000	1444300000	1351900000	386540000	184480000	202060000	534820000	281420000	253400000	936660000	472050000	464610000	938170000	506370000	431800000	7487	1234	7073	46450;46451;46452;46453;46454;46455	63194;63195;63196;63197;63198;63199;63200;63201;63202	63199			9	
DGPMKFEK	2	Acetyl (K)	992.46372	0.46371763	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		45.507	36.204	2	0.046624	20281	160513_QHF_FH_JSI11Kac_3	48.794	28.274			1.0333	1.0005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0333	1.0005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3572000	2073300	1498700	0	0	0	0	0	0	3572000	2073300	1498700	0	0	0	7488	3625	7074	46456	63203	63203			1	
DGPNALTPPPTTPEWIK	1	Unmodified	1832.9309	0.93086439	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	77.589	77.096	2;3	1.6872E-10	70018	160511_QHF_FH_JSI10i_1	138.42	124.26			0.67254	0.73284	65.683	6	5	Median	0.44459	0.36203	21.531	2	1	Median	0.90778	1.0734	75.982	2	2	Median	0.87113	0.85621	NaN	1	1	Median	1.1621	1.1756	NaN	1	1	Median	755620000	371230000	384400000	127950000	81748000	46200000	270960000	119930000	151030000	174430000	84466000	89967000	182280000	85085000	97194000	7489	821	7075	46457;46458;46459;46460;46461;46462;46463;46464	63204;63205;63206;63207;63208;63209;63210;63211;63212;63213;63214;63215;63216;63217	63211			14	
DGPNALTPPPTTPEWVK	1	Unmodified	1818.9152	0.91521432	1032	P13637	ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	77.197	76.854	2	4.2211E-05	69637	160511_QHF_FH_JSI10i_1	91.914	34.078			0.57514	0.67569	9.5141	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.57514	0.67569	NaN	1	1	Median	0.60544	0.58015	NaN	1	1	Median	0.67952	0.69099	NaN	1	1	Median	34407000	22940000	11467000	0	0	0	16535000	10650000	5885000	8639200	6322000	2317300	9232600	5967800	3264800	7490	1032	7076	46465;46466;46467	63218;63219;63220	63220			3	
DGPPHQVLVVPLHSR	0	Unmodified	1649.9002	0.90017338	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9	7		1							1	1	1			52.559	47.762	3;4	0.013241	26135	160513_QHF_FH_JSI10Kac_6	39.91	28.966			0.92398	0.92697	23.29	2	2	Median	1.2939	1.0929	NaN	1	1	Median	0.65985	0.78622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62137000	28619000	33519000	53826000	23887000	29938000	8311600	4731300	3580400	0	0	0	0	0	0	7491	2795	7077	46468;46469	63221;63222	63222			2	
DGPSLLVVEQVR	0	Unmodified	1310.7194	0.71941505	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	71.609	71.081	2	0.036649	64739	160511_QHF_FH_JSI12i_1	53.211	37.951			0.66741	0.70922	16.22	4	0	Median	1.099	0.9259	NaN	1	0	Median	0.61609	0.71555	NaN	1	0	Median	0.72301	0.70294	NaN	1	0	Median	0.6148	0.63174	NaN	1	0	Median	213730000	121500000	92228000	37901000	19202000	18699000	69752000	36183000	33569000	59036000	37983000	21053000	47044000	28136000	18908000	7492	3506	7078	46470;46471;46472;46473	63223	63223			0	
DGPSSAPATPTK	1	Unmodified	1127.5459	0.54586736	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.91	13.942	2	0.008286	11223	160511_QHF_FH_JSI9i_1	59.367	51.887			1.4784	1.2141	NaN	1	1	Median	1.4784	1.2141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22097000	12267000	9829400	22097000	12267000	9829400	0	0	0	0	0	0	0	0	0	7493	4140	7079	46474	63224	63224			1	
DGPVGFADFVYK	1	Unmodified	1313.6292	0.62920306	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	84.064	83.602	2	2.4551E-14	74395	160511_QHF_FH_JSI9i_1	135.86	114.99			1.0805	1.2352	15.14	4	1	Linear	1.0782	0.88149	NaN	1	1	Median	1.0529	1.2428	NaN	1	0	Median	1.2236	1.1806	NaN	1	0	Median	1.0829	1.1026	NaN	1	0	Median	387120000	184120000	203000000	74066000	36717000	37349000	123210000	61692000	61520000	105210000	45516000	59690000	84639000	40200000	44439000	7494	344	7080	46475;46476;46477;46478;46479	63225;63226;63227;63228;63229;63230;63231;63232	63232			8	
DGPVRPQNAEEEK	1	Unmodified	1467.6954	0.69538514	3830	Q92504	SLC39A7	Zinc transporter SLC39A7	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	12.705	12.19	2	0.00251	9660	160511_QHF_FH_JSI9i_1	71.016	31.998			0.66673	0.77299	21.159	3	0	Median	1.1369	0.93694	NaN	1	0	Median	0.66673	0.77299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57544	0.61401	NaN	1	0	Median	319590000	177660000	141930000	112110000	55890000	56224000	101600000	58029000	43566000	0	0	0	105880000	63738000	42138000	7495	3830	7081	46480;46481;46482	63233;63234;63235;63236	63235			4	
DGPYITAEEAVAVYTTTVHWLESR	0	Unmodified	2707.313	0.31296088	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	99.77	92.188	3	5.8877E-05	49807	160513_QHF_FH_JSI12Kac_6	62.1	57.134			0.92239	1.0293	39.236	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1519	1.3584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73861	0.77992	NaN	1	0	Median	451900000	206260000	245640000	0	0	0	373390000	161780000	211610000	0	0	0	78505000	44472000	34033000	7496	3101	7082	46483;46484	63237;63238	63237			0	
DGQAMLWDLNEGK	1	Unmodified	1475.6715	0.67147858	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.04	9					2	3			2	4	2	6	74.666	71.396	2;3	3.5187E-82	65273	160511_QHF_FH_JSI12i_1	248.42	213.13			0.90969	1.0115	37.776	13	6	Median	1.5016	1.2324	16.825	2	1	Median	1.1142	1.319	37.557	4	1	Median	1.0362	1.005	3.0231	2	1	Median	0.73916	0.77235	25.969	5	3	Median	7135400000	3673400000	3462100000	1828900000	755440000	1073500000	1901800000	1092600000	809200000	1978900000	1020800000	958080000	1425800000	804490000	621350000	7497	2061	7083	46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498	63239;63240;63241;63242;63243;63244;63245;63246;63247;63248;63249;63250;63251;63252;63253;63254;63255;63256;63257;63258;63259;63260;63261;63262;63263;63264;63265	63244			27	
DGQAMLWDLNEGK	1	Oxidation (M)	1491.6664	0.6663932	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		69.913	60.377	2	0.0093349	30631	160513_QHF_FH_JSI11Kac_3	70.17	44.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7498	2061	7083	46499	63266	63266		1723	1	
DGQILPVPNVVVR	0	Unmodified	1404.8089	0.80889876	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.339	80.87	2	5.7252E-05	71991	160511_QHF_FH_JSI9i_1	134.25	123.08			0.87184	0.92854	24.785	4	0	Median	1.3436	1.0832	NaN	1	0	Median	0.70839	0.82953	NaN	1	0	Median	1.073	1.0394	NaN	1	0	Median	0.61645	0.6316	NaN	1	0	Median	891520000	447860000	443660000	236970000	92434000	144540000	250090000	140400000	109690000	217280000	97349000	119940000	187170000	117680000	69491000	7499	5200	7084	46500;46501;46502;46503	63267;63268;63269;63270;63271;63272;63273;63274	63274			8	
DGQLLIR	0	Unmodified	813.47085	0.47085192	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	36.84	35.933	2	0.011756	32232	160511_QHF_FH_JSI10i_1	60.76	25.266			1.292	1.1916	30.179	2	2	Median	1.8214	1.4751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91641	0.96263	NaN	1	1	Median	83254000	43311000	39942000	42319000	19501000	22817000	0	0	0	0	0	0	40935000	23810000	17125000	7500	4856	7085	46504;46505;46506;46507;46508	63275;63276;63277;63278;63279	63278			5	
DGQLTVGLVGYPNVGK	1	Unmodified	1615.857	0.85697116	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	74.876	74.438	2	1.2612E-16	67552	160511_QHF_FH_JSI10i_1	119.76	104.79			0.24759	0.24328	14.998	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27793	0.2705	NaN	1	1	Median	0.22056	0.2188	NaN	1	1	Median	29463000	23635000	5828500	0	0	0	0	0	0	13746000	10699000	3047300	15717000	12936000	2781100	7501	4621	7086	46509;46510;46511	63280;63281;63282	63282			3	
DGQMLPGEDEPLHALVTANTMENVK	1	Unmodified	2708.2786	0.27856599	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								3	3	4	2	88.143	87.617	3	2.8344E-11	79470	160511_QHF_FH_JSI10i_1	91.722	84.189			0.85256	0.86624	18.054	11	7	Median	1.099	0.95454	23.265	3	2	Median	0.81683	0.97797	9.0461	3	2	Median	0.85256	0.85846	17.44	3	2	Median	0.72665	0.76003	13.604	2	1	Median	543820000	282140000	261680000	89648000	42460000	47188000	190230000	96560000	93670000	152480000	75215000	77269000	111450000	67903000	43551000	7502	2689	7087	46512;46513;46514;46515;46516;46517;46518;46519;46520;46521;46522;46523	63283;63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296;63297;63298;63299	63290			17	
DGQMLPGEDEPLHALVTANTMENVKK	2	Unmodified	2836.3735	0.373529	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	79.848	79.379	3;4	7.4973E-05	68946	160511_QHF_FH_JSI12i_3	50.029	46.815			1.4286	1.1999	33.186	3	2	Median	1.4286	1.1999	NaN	1	1	Median	0.82744	0.98081	NaN	1	0	Median	2.0918	1.8759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120360000	43462000	76894000	22788000	8429200	14359000	49889000	23521000	26367000	47679000	11512000	36167000	0	0	0	7503	2689	7088	46524;46525;46526;46527	63300;63301;63302;63303;63304;63305	63305			6	
DGQVINETSQHHDDLE	0	Unmodified	1835.7922	0.79219865	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	4.33	11					2				3	4	4	2	31.389	29.371	2;3	1.4046E-27	26202	160511_QHF_FH_JSI11i_1	146.07	120.63			0.87082	0.91267	120.47	12	12	Median	4.8215	3.9374	126.37	3	3	Plateau	0.92151	1.089	150.51	4	4	Median	0.42278	0.41138	123.76	3	3	Median	0.62359	0.659	143.79	2	2	Median	1253200000	581540000	671620000	346410000	141370000	205040000	440180000	175770000	264410000	235180000	127460000	107720000	231390000	136930000	94458000	7504	913	7089	46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540	63306;63307;63308;63309;63310;63311;63312;63313;63314;63315;63316;63317;63318	63308			13	
DGQWFTDWDAVPHSR	0	Unmodified	1815.7965	0.79649617	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			80.105	79.399	3	0.043447	70641	160511_QHF_FH_JSI10i_2	19.39	15.549			0.80748	1.0401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80748	1.0401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12702000	7042200	5659700	0	0	0	12702000	7042200	5659700	0	0	0	0	0	0	7505	2282	7090	46541	63319	63319			1	
DGRFVIIR	0	Unmodified	974.56615	0.56614929	3818	Q8WYB5	KAT6B	Histone acetyltransferase KAT6B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	52.08	51.845	3	0.024343	44454	160511_QHF_FH_JSI12i_3	29.149	4.2262			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7506	3818	7091	46542	63320	63320			1	
DGRGALQNIIPASTGAAK	1	Unmodified	1738.9326	0.93259572	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			56.679	55.529	3	0.0018941	48763	160511_QHF_FH_JSI9i_2	52.814	45.352			2.3519	2.9056	210.72	3	3	Median	0.13014	0.11365	NaN	1	1	Median	3.464	4.1484	50.356	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155590000	64002000	91586000	48740000	38813000	9927300	106850000	25189000	81658000	0	0	0	0	0	0	7507	812	7092	46543;46544;46545	63321;63322;63323;63324	63323			4	
DGRPLQPHVR	0	Unmodified	1173.6367	0.63668847	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.726	11.929	3	0.013715	9194	160511_QHF_FH_JSI9i_3	32.329	22.674			3.0215	2.4924	NaN	1	0	Median	3.0215	2.4924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22468000	6130800	16337000	22468000	6130800	16337000	0	0	0	0	0	0	0	0	0	7508	4848	7093	46546	63325	63325			1	
DGSASAAAKK	2	Acetyl (K)	946.47197	0.47197413	1556	P43243	MATR3	Matrin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					4						2	1	1	8.4211	1.1799	2	3.5337E-05	2844	160513_QHF_FH_JSI12Kac_2	105.4	86.994			4.0138	4.6713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.0138	4.6713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15778000	13695000	2083800	0	0	0	7350600	5266800	2083800	2449300	2449300	0	5978500	5978500	0	7509	1556	7094	46547;46548;46549;46550	63326;63327;63328;63329	63329	1568;1569		4	
DGSASAAAKKK	3	2 Acetyl (K)	1116.5775	0.57750184	1556	P43243	MATR3	Matrin-3	yes	yes	2	0	0	2				By MS/MS	12	0					1								1	17.688	10.646	2	0.015428	6238	160513_QHF_FH_JSI12Kac_2	79.148	63.486			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2273800	2273800	0	0	0	0	0	0	0	0	0	0	2273800	2273800	0	7510	1556	7095	46551	63330	63330	1568;1569		1	
DGSAVEIVGLSK	1	Unmodified	1173.6241	0.62411768	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	4.94	2				1	6				1	3	2	3	65.341	58.325	2	3.481E-05	51423	160511_QHF_FH_JSI9i_1	105.13	76.047			1.3767	1.2846	66.256	7	6	Median	1.5605	1.2846	NaN	1	0	Median	1.0797	1.2412	68.796	2	2	Median	1.5132	1.4757	124.62	2	2	Median	0.88833	0.93939	62.899	2	2	Median	120290000	53972000	66320000	71132000	31029000	40104000	4286400	1955300	2331200	2948300	1275700	1672600	41925000	19713000	22212000	7511	1435	7096	46552;46553;46554;46555;46556;46557;46558;46559;46560	63331;63332;63333;63334;63335;63336;63337;63338;63339	63335			9	
DGSCGVAYVVQEPGDYEVSVK	1	Unmodified	2257.0209	0.020877961	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	71.232	70.837	2	3.2681E-57	64365	160511_QHF_FH_JSI11i_1	218.11	205.97			1.0488	1.2067	18.559	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0488	1.2197	NaN	1	0	Median	0.9081	0.89258	NaN	1	0	Median	0.83622	0.87696	NaN	1	0	Median	130140000	67574000	62570000	0	0	0	49813000	25018000	24795000	41447000	22731000	18716000	38884000	19825000	19059000	7512	1192	7097	46561;46562;46563	63340;63341;63342;63343;63344;63345;63346	63340			7	
DGSCSVEYIPYEAGTYSLNVTYGGHQVPGSPFK	1	Unmodified	3578.63	0.63001428	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	96.304	96.114	3	4.072E-16	87365	160511_QHF_FH_JSI11i_1	79.365	74.604			0.97339	1.02	24.869	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0206	1.1645	NaN	1	0	Median	0.83389	0.79932	15.727	2	1	Median	1.2393	1.2202	NaN	1	1	Median	58436000	25029000	33406000	0	0	0	21633000	9998600	11634000	24926000	11948000	12977000	11877000	3082400	8794900	7513	1192	7098	46564;46565;46566;46567	63347;63348;63349;63350;63351;63352;63353;63354	63347			8	
DGSDEPGTAACPNGSFHCTNTGYK	1	Unmodified	2542.0125	0.012514894	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.06	32.674	3	5.2361E-21	29259	160511_QHF_FH_JSI11i_1	128.38	125.8			1.0011	1.0583	12.814	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0615	1.2346	NaN	1	0	Median	0.97926	0.95725	NaN	1	0	Median	1.0011	1.0583	NaN	1	0	Median	142060000	77794000	64263000	0	0	0	48578000	25972000	22606000	57485000	34128000	23358000	35993000	17694000	18299000	7514	1050	7099	46568;46569;46570	63355;63356;63357;63358;63359	63356			5	
DGSDVIYPAR	0	Unmodified	1091.5247	0.52473799	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	39.492	30.65	2	0.00051922	17636	160513_QHF_FH_JSI11Kac_3	88.948	82.845			0.77715	0.79668	22.65	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96326	0.93507	NaN	1	0	Median	0.627	0.67878	NaN	1	1	Median	4845600	2598800	2246800	0	0	0	0	0	0	3034000	1572400	1461600	1811600	1026400	785240	7515	1262	7100	46571;46572;46573	63360;63361;63362;63363	63362			4	
DGSFLVR	0	Unmodified	792.413	0.41300269	280	O15357;Q92835;Q7Z7G1	INPPL1;INPP5D;CLNK	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2;Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1;Cytokine-dependent hematopoietic cell linker	yes	no	0	0	0	0				By MS/MS	1	0	1												1	37.267	36.669	2	0.011657	33233	160511_QHF_FH_JSI12i_1	76.847	0			0.40576	0.41356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40576	0.41356	NaN	1	1	Median	18617000	13130000	5486700	0	0	0	0	0	0	0	0	0	18617000	13130000	5486700	7516	280	7101	46574	63364	63364			1	
DGSGGASGTLQPSSGGGSSNSR	0	Unmodified	1921.8362	0.83618873	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			14.426	13.458	2	3.9101E-05	10776	160511_QHF_FH_JSI9i_1	98.943	76.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11299000	0	11299000	11299000	0	11299000	0	0	0	0	0	0	0	0	0	7517	5136	7102	46575;46576	63365;63366	63366			2	
DGSGQEKYR	1	Acetyl (K)	1080.4836	0.48360145	1977	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		11.868	4.5388	2	0.057087	4957	160513_QHF_FH_JSI11Kac_3	42.19	28.421			0.52379	0.50599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52379	0.50599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3112600	1972900	1139700	0	0	0	0	0	0	3112600	1972900	1139700	0	0	0	7518	1977	7103	46577	63367	63367			1	
DGSIDLVINLPNNNTK	1	Unmodified	1725.8897	0.88972785	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	81.175	80.832	2	7.3852E-17	71894	160511_QHF_FH_JSI9i_1	124.1	100.73			0.70171	0.6968	20.19	4	2	Median	NaN	NaN	NaN	0	0	Median	0.53466	0.622	NaN	1	0	Median	0.88208	0.83819	23.401	2	2	Median	0.65046	0.6835	NaN	1	0	Median	129160000	73619000	55541000	0	0	0	48518000	30195000	18323000	50483000	25570000	24913000	30159000	17854000	12305000	7519	1372	7104	46578;46579;46580;46581;46582	63368;63369;63370;63371;63372;63373;63374	63374			7	
DGSLANNPYPGDVTK	1	Unmodified	1546.7264	0.72635092	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		42.091	41.438	2	1.8788E-09	37228	160511_QHF_FH_JSI10i_1	187.85	174.26			0.97864	0.8088	11.519	3	2	Plateau	0.97864	0.8088	NaN	1	0	Median	0.83983	0.99978	NaN	1	1	Median	0.84401	0.83165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	215770000	106000000	109760000	46236000	20699000	25537000	75206000	42643000	32563000	94324000	42662000	51662000	0	0	0	7520	2950	7105	46583;46584;46585	63375;63376;63377	63376			3	
DGSLASNPYSGDLTK	1	Unmodified	1523.7104	0.71036651	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	2	3	2	53.48	48.408	2	1.0586E-29	43682	160511_QHF_FH_JSI10i_1	187.44	167.15			1.0891	1.1032	32.969	7	1	Median	1.3201	1.1032	NaN	1	0	Median	0.93016	1.0687	19.653	2	0	Median	1.1666	1.1316	23.662	2	0	Median	0.96433	1.0353	74.094	2	1	Median	1470600000	755490000	715120000	335990000	146160000	189830000	352020000	199090000	152930000	451090000	191520000	259570000	331510000	218720000	112780000	7521	2505	7106	46586;46587;46588;46589;46590;46591;46592;46593	63378;63379;63380;63381;63382;63383;63384;63385;63386;63387;63388;63389;63390	63386			13	
DGSLEVTGQLGEVMK	1	Unmodified	1561.7658	0.76577289	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.872	72.359	2	1.0227E-29	64387	160511_QHF_FH_JSI9i_1	187.78	176.95			0.87806	0.94605	35.631	4	0	Median	1.4185	1.183	NaN	1	0	Median	0.79888	0.95533	NaN	1	0	Median	0.96508	0.93687	NaN	1	0	Median	0.50084	0.51607	NaN	1	0	Median	396780000	214670000	182110000	77894000	33535000	44360000	129780000	66514000	63270000	89740000	51457000	38283000	99358000	63161000	36197000	7522	1459	7107	46594;46595;46596;46597	63391;63392;63393;63394;63395;63396;63397;63398	63398			8	
DGSLFHSTHK	1	Unmodified	1127.536	0.53597137	5067	Q9NWM8	FKBP14	Peptidyl-prolyl cis-trans isomerase FKBP14	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	12.833	12.915	3	0.012569	9906	160511_QHF_FH_JSI12i_3	41.689	28.336			0.64437	0.6355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64437	0.6355	NaN	1	1	Median	27042000	15096000	11946000	0	0	0	0	0	0	0	0	0	27042000	15096000	11946000	7523	5067	7108	46598	63399	63399			1	
DGSLIVSSSYDGLCR	0	Unmodified	1627.7512	0.75118546	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.687	63.638	2	0.00088803	56573	160511_QHF_FH_JSI9i_1	82.171	66.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7524	1971	7109	46599	63400	63400			1	
DGSNIIYTAK	1	Unmodified	1080.5451	0.54513908	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		42.615	33.405	2	0.034856	18955	160513_QHF_FH_JSI11Kac_3	51.268	44.047			0.56685	0.54423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56685	0.54423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3228200	1893600	1334600	0	0	0	0	0	0	3228200	1893600	1334600	0	0	0	7525	5269	7110	46600	63401	63401			1	
DGSNLPILPPQR	0	Unmodified	1305.7041	0.70409934	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	58.981	58.373	2	0.0001128	52802	160511_QHF_FH_JSI11i_1	87.485	81.989			0.82424	0.88074	37	6	5	Median	1.7951	1.5098	NaN	1	1	Median	0.72159	0.84961	5.7365	2	2	Median	0.89754	0.87673	NaN	1	0	Median	0.68017	0.70842	54.168	2	2	Median	236780000	130540000	106240000	37940000	15110000	22831000	83556000	46468000	37089000	54713000	29952000	24761000	60567000	39011000	21556000	7526	5161	7111	46601;46602;46603;46604;46605;46606	63402;63403;63404;63405;63406;63407;63408;63409;63410	63402			9	
DGSPIADDLLEK	1	Unmodified	1271.6245	0.62451161	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.357	65.757	2	4.0816E-05	59771	160511_QHF_FH_JSI12i_1	102.53	91.311			0.8001	0.8449	14.855	4	0	Median	1.1969	0.96654	NaN	1	0	Median	0.75817	0.88053	NaN	1	0	Median	0.84434	0.8107	NaN	1	0	Median	0.65391	0.68128	NaN	1	0	Median	222170000	119730000	102440000	49513000	21053000	28460000	69861000	40743000	29117000	51812000	29111000	22702000	50985000	28823000	22163000	7527	4551	7112	46607;46608;46609;46610	63411;63412;63413;63414;63415;63416	63413			6	
DGSSGGVIR	0	Unmodified	846.41954	0.41954463	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		11.896	4.5287	2	0.00046559	4962	160513_QHF_FH_JSI11Kac_3	95.605	81.681			0.85639	0.92493	7.3191	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74015	0.87828	NaN	1	0	Median	0.99088	0.97406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28251000	13951000	14300000	0	0	0	8823000	5074000	3749000	19428000	8876900	10551000	0	0	0	7528	1302	7113	46611;46612	63417;63418;63419	63417			3	
DGSTMLIEAAK	1	Unmodified	1134.5591	0.55907458	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		49.747	49.063	2	8.5111E-05	44295	160511_QHF_FH_JSI10i_1	99.973	83.5			0.4289	0.4369	26.427	3	3	Plateau	0.84609	0.68416	NaN	1	1	Median	0.42915	0.50157	NaN	1	1	Median	0.4289	0.40445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	171490000	99937000	71551000	50978000	26345000	24632000	57457000	36070000	21387000	63053000	37521000	25531000	0	0	0	7529	3434;489	7114	46613;46614;46615	63420;63421;63422	63421			3	
DGSTTAGNSSQVSDGAAAILLAR	0	Unmodified	2161.0611	0.061103292	923	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	73.91	73.353	2	9.3738E-30	66508	160511_QHF_FH_JSI10i_1	174.59	160.03			1.2557	1.2227	28.07	2	1	Median	1.8309	1.4911	NaN	1	1	Median	0.86113	1.0026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28601000	11994000	16606000	14043000	3184300	10859000	14558000	8810100	5747500	0	0	0	0	0	0	7530	923	7115	46616;46617;46618	63423;63424;63425	63424			3	
DGSVAIASK	1	Unmodified	846.4447	0.44469675	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.32	8	1	2		3	3				3	4	7	3	17.769	14.897	2	4.8344E-06	13013	160511_QHF_FH_JSI12i_1	117.89	55.927			0.62216	0.67114	82.82	17	12	Median	2.9527	2.3964	100.98	3	3	Median	1.0386	1.2206	93.114	4	4	Median	0.92936	0.91261	82.566	7	4	Median	0.5862	0.60979	43.191	3	1	Median	3663100000	1985600000	1677500000	849260000	390070000	459190000	1108900000	649010000	459940000	1210000000	637930000	572090000	494910000	308610000	186300000	7531	1865	7116	46619;46620;46621;46622;46623;46624;46625;46626;46627;46628;46629;46630;46631;46632;46633;46634;46635	63426;63427;63428;63429;63430;63431;63432;63433;63434;63435;63436;63437;63438;63439;63440	63431			15	
DGSVAIASKPR	1	Unmodified	1099.5986	0.59857163	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	4.01	1	7	5				2			2	3	5	5	16.524	14.938	2;3	0.00014624	11987	160511_QHF_FH_JSI12i_3	112.36	97.691			1.0034	0.99531	73.112	14	14	Median	2.1503	1.8363	81.541	2	2	Median	1.1955	1.3836	52.4	3	3	Median	1.6449	1.6281	69.18	5	5	Median	0.40193	0.40417	47.36	4	4	Median	738170000	369030000	369130000	123890000	36580000	87314000	96161000	47607000	48553000	222570000	113630000	108940000	295540000	171210000	124330000	7532	1865	7117	46636;46637;46638;46639;46640;46641;46642;46643;46644;46645;46646;46647;46648;46649;46650	63441;63442;63443;63444;63445;63446;63447;63448;63449;63450;63451;63452;63453;63454;63455	63454			15	
DGSVAIASKPR	1	Acetyl (K)	1141.6091	0.60913632	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	41.788	32.88	2	6.056E-07	14892	160513_QHF_FH_JSI10Kac_2	111.06	102.84			0.64074	0.61811	26.539	6	0	Median	NaN	NaN	NaN	0	0	Median	0.8126	0.96756	12.468	2	0	Median	0.64074	0.612	10.943	2	0	Median	0.54325	0.57386	0.9671	2	0	Median	56720000	33115000	23605000	0	0	0	18268000	8971700	9296000	20473000	12526000	7946500	17980000	11617000	6362900	7533	1865	7117	46651;46652;46653;46654;46655;46656	63456;63457;63458;63459;63460;63461;63462;63463;63464	63460	1877		9	
DGSYAWEIK	1	Unmodified	1067.4924	0.49237523	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.092	51.42	2	3.5787E-05	46629	160511_QHF_FH_JSI12i_1	99.802	83.026			1.2379	1.3207	32.412	4	0	Median	1.643	1.3554	NaN	1	0	Median	1.0993	1.306	NaN	1	0	Median	1.3941	1.3355	NaN	1	0	Median	0.68665	0.69717	NaN	1	0	Median	552890000	270540000	282350000	112520000	40617000	71900000	175030000	97554000	77474000	151980000	70841000	81135000	113370000	61526000	51846000	7534	2568	7118	46657;46658;46659;46660	63465;63466;63467;63468;63469;63470	63467			5	
DGTAGIPNLQLYDVK	1	Unmodified	1602.8253	0.82533668	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.369	79.9	2	2.6462E-06	72584	160511_QHF_FH_JSI11i_1	122.7	107.73			1.0872	1.1496	28.943	4	2	Median	1.6303	1.3585	NaN	1	0	Median	1.0281	1.1843	NaN	1	1	Median	1.1498	1.116	NaN	1	1	Median	0.6794	0.6978	NaN	1	0	Median	461580000	230110000	231470000	117680000	49183000	68501000	120530000	66081000	54446000	124990000	57065000	67929000	98373000	57780000	40593000	7535	4535	7119	46661;46662;46663;46664	63471;63472;63473;63474;63475;63476;63477;63478;63479;63480;63481	63471			11	
DGTDGETEVGEIQQNK	1	Unmodified	1718.7595	0.75950154	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		31.958	31.38	2	2.469E-11	27997	160511_QHF_FH_JSI10i_1	110.08	77.471			1.2848	1.2388	79.071	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2848	1.2388	79.071	2	2	Median	NaN	NaN	NaN	0	0	Median	47521000	14799000	32721000	9369400	0	9369400	0	0	0	38151000	14799000	23352000	0	0	0	7536	3086	7120	46665;46666;46667;46668	63482;63483;63484;63485	63484			4	
DGTELELK	1	Unmodified	903.45493	0.45492709	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	5.84	3				1	2				1	1	2	2	36.844	32.12	2	0.0007704	28889	160511_QHF_FH_JSI10i_1	98.458	78.981			1.0559	1.0082	31.503	6	0	Median	1.1558	0.96118	NaN	1	0	Median	0.67524	0.78427	NaN	1	0	Median	1.5578	1.5079	10.704	2	0	Median	0.80367	0.88006	25.982	2	0	Median	496020000	254660000	241360000	165660000	75772000	89893000	162590000	97936000	64659000	163430000	78419000	85016000	4324500	2535300	1789200	7537	2571	7121	46669;46670;46671;46672;46673;46674	63486;63487;63488;63489;63490;63491;63492	63489			7	
DGTFDPDNLEK	1	Unmodified	1249.5463	0.54626129	3445	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.703	47.023	2	5.597E-13	42362	160511_QHF_FH_JSI10i_1	145.89	126.1			0.89001	0.93923	22.723	4	0	Median	1.6611	1.3828	NaN	1	0	Median	0.76247	0.90749	NaN	1	0	Median	0.99931	0.97208	NaN	1	0	Median	0.79267	0.81949	NaN	1	0	Median	291600000	149390000	142210000	77500000	29496000	48004000	75143000	41068000	34075000	74366000	41783000	32583000	64590000	37043000	27547000	7538	3445	7122	46675;46676;46677;46678	63493;63494;63495;63496	63495			3	
DGTFPLPIGESVTVTR	0	Unmodified	1687.8781	0.87810054	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.452	88.013	2	0.00062126	79805	160511_QHF_FH_JSI10i_1	65.395	55.708			1.0174	1.0824	53.665	4	0	Median	3.3302	2.7147	NaN	1	0	Median	0.87343	1.0149	NaN	1	0	Median	1.185	1.1544	NaN	1	0	Median	0.76952	0.78798	NaN	1	0	Median	133870000	71047000	62821000	16611000	3528500	13082000	49179000	29349000	19829000	34543000	16243000	18300000	33535000	21926000	11610000	7539	834	7123	46679;46680;46681;46682	63497;63498	63498			2	
DGTGVVEFVR	0	Unmodified	1077.5455	0.54547343	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	3	2	1	57.073	52.231	2	6.385E-14	47493	160511_QHF_FH_JSI11i_1	156.35	129.65			0.79228	0.91086	20.951	7	3	Median	1.5121	1.2532	NaN	1	0	Median	0.67795	0.79608	10.754	3	2	Plateau	0.88888	0.86938	15.077	2	1	Median	0.61406	0.64949	NaN	1	0	Median	994200000	517190000	477010000	199870000	72889000	126980000	241980000	142040000	99937000	341960000	178520000	163440000	210390000	123740000	86648000	7540	2260	7124	46683;46684;46685;46686;46687;46688;46689	63499;63500;63501;63502;63503;63504;63505	63499			7	
DGTGVVEFVRK	1	Unmodified	1205.6404	0.64043645	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.24	5.01	3	9	2					3		2	4	7	4	45.638	42.934	2;3	8.7625E-08	37528	160511_QHF_FH_JSI9i_2	99.752	83.081			1.0546	0.90619	63.875	15	9	Median	1.1205	0.95641	7.6273	2	0	Median	0.61657	0.75547	83.793	2	2	Median	1.3425	1.3749	77.276	7	4	Median	0.56584	0.63189	41.458	4	3	Median	1144100000	601600000	542550000	203790000	98661000	105130000	99520000	50968000	48553000	501790000	243160000	258630000	339040000	208800000	130240000	7541	2260	7125	46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700;46701;46702;46703;46704;46705;46706	63506;63507;63508;63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519;63520;63521;63522	63512			17	
DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVK	1	Unmodified	3942.9621	0.96211152	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.61	94.893	4	9.9435E-53	55923	160513_QHF_FH_JSI10Kac_6	151.38	146.62			0.82169	0.9578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82169	0.9578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106400000	66204000	40196000	0	0	0	106400000	66204000	40196000	0	0	0	0	0	0	7542	380	7126	46707	63523	63523			1	
DGTIDFTPGSELLITK	1	Unmodified	1705.8774	0.87743183	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	90.237	89.814	2	2.5939E-15	81703	160511_QHF_FH_JSI12i_1	163.99	121.99			0.98392	1.0483	51.292	4	0	Median	1.6475	1.3398	NaN	1	0	Median	0.93394	1.0922	NaN	1	0	Median	1.0366	1.0061	NaN	1	0	Median	0.41073	0.41969	NaN	1	0	Median	307690000	158900000	148790000	68220000	26124000	42096000	92063000	41178000	50885000	81628000	45133000	36494000	65775000	46464000	19311000	7543	100	7127	46708;46709;46710;46711	63524;63525;63526;63527;63528;63529;63530;63531;63532	63527			9	
DGTILCTLMNK	1	Unmodified	1264.6155	0.6155436	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.741	78.266	2	8.4434E-06	71207	160511_QHF_FH_JSI12i_1	125.48	109.82			1.4082	1.2382	14.395	4	4	Median	1.4974	1.199	NaN	1	1	Median	1.0594	1.2378	NaN	1	1	Median	1.3243	1.2386	NaN	1	1	Median	1.5516	1.6311	NaN	1	1	Median	121370000	53206000	68161000	11960000	5076000	6884000	38073000	13131000	24942000	49828000	25147000	24681000	21506000	9852000	11654000	7544	4268	7128	46712;46713;46714;46715	63533;63534;63535;63536	63534			4	
DGTLVSGGGR	0	Unmodified	917.45666	0.45665842	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	1					1					1	1		15.748	11.919	2	0.00015996	11038	160511_QHF_FH_JSI10i_1	95.502	27.604			1.0691	1.1521	82.682	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53567	0.64208	NaN	1	1	Median	2.1339	2.0673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133040000	74455000	58590000	0	0	0	128140000	72703000	55436000	4906100	1752100	3154100	0	0	0	7545	737	7129	46716;46717	63537;63538	63538			2	
DGTPAPGYPSYQQYH	0	Unmodified	1679.7216	0.72159989	452	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.935	42.718	2	0.0011211	38059	160511_QHF_FH_JSI9i_1	64.103	43.315			1.9379	1.6191	NaN	1	0	Median	1.9379	1.6191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95943000	34692000	61251000	95943000	34692000	61251000	0	0	0	0	0	0	0	0	0	7546	452	7130	46718	63539;63540	63540			2	
DGTTDSGIK	1	Unmodified	892.41379	0.41379055	5060	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12	0					2							1	1	8.3746	1.1241	2	0.002278	2740	160513_QHF_FH_JSI11Kac_2	79.474	59.997			1.1299	1.1454	1.3118	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1897	1.1349	NaN	1	0	Median	1.0731	1.1561	NaN	1	0	Median	5273500	2349500	2924000	0	0	0	0	0	0	2923000	1038400	1884700	2350500	1311200	1039300	7547	5060	7131	46719;46720	63541;63542	63541			2	
DGTTHQTSLELFMYLNEVAGK	1	Unmodified	2353.126	0.12601173	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.91		8							11	4	5	4	6	96.538	91.68	2;3;4	4.3919E-146	47210	160513_QHF_FH_JSI11Kac_6	323.02	288.33			0.83876	0.91873	38.03	19	0	Median	1.564	1.4933	12.435	4	0	Linear	0.82133	0.97188	11.817	5	0	Median	0.97525	0.94657	10.949	4	0	Median	0.60793	0.65348	35.119	6	0	Median	10186000000	5169300000	5017000000	2016800000	731420000	1285400000	2563700000	1398700000	1165000000	2992100000	1457000000	1535100000	2613700000	1582100000	1031500000	7548	779	7132	46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739	63543;63544;63545;63546;63547;63548;63549;63550;63551;63552;63553;63554;63555;63556;63557;63558;63559;63560;63561;63562;63563;63564;63565;63566;63567	63547			25	
DGTTHQTSLELFMYLNEVAGK	1	Oxidation (M)	2369.1209	0.12092636	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	91.238	83.433	3	1.6965E-13	44457	160513_QHF_FH_JSI12Kac_6	114.88	103.58			1.1449	1.2606	28.061	5	2	Median	1.8148	1.5484	NaN	1	0	Median	1.1203	1.3403	8.6619	2	2	Median	1.1449	1.0796	NaN	1	0	Median	0.72293	0.76022	NaN	1	0	Median	783450000	374350000	409100000	155870000	50512000	105360000	280530000	150330000	130200000	152980000	59964000	93017000	194070000	113550000	80524000	7549	779	7132	46740;46741;46742;46743;46744	63568;63569;63570;63571;63572;63573;63574;63575	63572		293	8	
DGTTHQTSLELFMYLNEVAGKHGVGR	1	Acetyl (K)	2901.4079	0.40794067	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		91.126	83.586	4	5.9558E-20	48208	160513_QHF_FH_JSI10Kac_6	117.53	111.1			1.5472	1.8376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5472	1.8376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	570970000	524070000	46900000	0	0	0	72418000	25518000	46900000	498550000	498550000	0	0	0	0	7550	779	7133	46745;46746	63576;63577	63577	405		2	
DGTVLCELINALYPEGQAPVK	1	Unmodified	2286.1566	0.15658358	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	102.86	102.77	3	3.946E-15	93577	160511_QHF_FH_JSI10i_1	127.32	118.5			0.88812	1.0385	20.416	5	0	Median	1.5944	1.2536	NaN	1	0	Median	0.88812	1.0385	NaN	1	0	Median	1.0127	1.0224	28.454	2	0	Median	0.79363	0.829	NaN	1	0	Median	562440000	295300000	267140000	25983000	15279000	10704000	140400000	76779000	63622000	271160000	134120000	137040000	124890000	69113000	55779000	7551	1470	7134	46747;46748;46749;46750;46751	63578;63579;63580;63581;63582;63583;63584;63585	63583			8	
DGTVLCELINALYPEGQAPVKK	2	Unmodified	2414.2515	0.2515466	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	102.05	102.06	3	3.1226E-10	88847	160511_QHF_FH_JSI12i_3	108.25	87.628			0.82387	0.85362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82387	0.85362	NaN	1	0	Median	459240000	231300000	227940000	0	0	0	0	0	0	0	0	0	459240000	231300000	227940000	7552	1470	7135	46752	63586	63586			1	
DGTVTAGNASGVADGAGAVIIASEDAVK	1	Unmodified	2515.2402	0.24018987	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	89.151	88.771	3	1.2532E-34	80624	160511_QHF_FH_JSI10i_1	153.97	146.75			0.80784	0.83409	30.42	7	6	Median	1.5666	1.2982	NaN	1	0	Median	0.74545	0.875	12.632	2	2	Median	0.88559	0.86102	4.4942	2	2	Median	0.54656	0.55896	14.195	2	2	Median	692420000	344780000	347640000	79828000	21268000	58559000	245170000	134390000	110780000	230480000	110380000	120100000	136940000	78736000	58202000	7553	1545	7136	46753;46754;46755;46756;46757;46758;46759	63587;63588;63589;63590;63591;63592;63593;63594	63592			8	
DGTVTAGNASGVADGAGAVIIASEDAVKK	2	Unmodified	2643.3352	0.33515289	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	3	2	83.711	83.218	3;4	1.684E-44	75857	160511_QHF_FH_JSI12i_1	181.62	173.91			0.91946	0.95186	34.615	8	4	Median	1.732	1.4211	17.206	2	0	Median	0.74307	0.88282	NaN	1	0	Median	1.0398	1.0263	25.808	3	2	Median	0.6104	0.63714	12.245	2	2	Median	984330000	481900000	502430000	162020000	54590000	107430000	176370000	98658000	77716000	338410000	144510000	193900000	307540000	184150000	123390000	7554	1545	7137	46760;46761;46762;46763;46764;46765;46766;46767	63595;63596;63597;63598;63599;63600;63601;63602;63603;63604;63605	63599			11	
DGTVTVR	0	Unmodified	746.39227	0.39226725	1192;512	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	3	1	10.779	6.9385	2	0.0055967	7080	160511_QHF_FH_JSI10i_1	94.262	54.5			0.9201	0.97607	23.92	8	0	Median	1.3995	1.138	NaN	1	0	Median	0.77437	0.89973	8.7277	3	0	Plateau	1.0441	1.0049	9.7958	3	0	Median	0.50809	0.53824	NaN	1	0	Median	3488400000	1700400000	1788000000	652670000	232110000	420550000	1069600000	586640000	482950000	977680000	442950000	534730000	788500000	438720000	349770000	7555	1192;512	7138	46768;46769;46770;46771;46772;46773;46774;46775	63606;63607;63608;63609;63610;63611;63612;63613;63614	63611			9	
DGTYAVTYIPDK	1	Unmodified	1341.6452	0.64524705	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	5.38	4				5	3				1	4	3	4	60.014	54.103	2	4.6531E-08	28220	160513_QHF_FH_JSI11Kac_3	112.13	103.27			0.96539	1.0243	38.034	10	4	Median	2.0634	1.6806	NaN	1	0	Median	0.87313	1.0337	25.373	3	2	Median	1.2364	1.2215	26.192	2	0	Median	0.76573	0.83378	46.148	4	2	Median	1304200000	542210000	761990000	280230000	70802000	209430000	304480000	149790000	154690000	444060000	178700000	265360000	275440000	142920000	132520000	7556	512	7139	46776;46777;46778;46779;46780;46781;46782;46783;46784;46785;46786;46787	63615;63616;63617;63618;63619;63620;63621;63622;63623;63624;63625;63626;63627;63628;63629	63619			15	
DGVADVSIEDSVISLSGDHCIIGR	0	Unmodified	2513.2068	0.20678125	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	3	2	96.934	96.712	3	2.1208E-24	87790	160511_QHF_FH_JSI12i_1	149.85	143.06			0.84076	0.90756	14.369	7	3	Median	1.3884	1.2173	NaN	1	0	Median	0.82053	0.95223	NaN	1	0	Median	0.91847	0.86019	6.6812	3	3	Plateau	0.75643	0.81658	3.9037	2	0	Median	322680000	170710000	151980000	18328000	6634100	11694000	103570000	58053000	45513000	101750000	54102000	47647000	99040000	51917000	47123000	7557	769	7140	46788;46789;46790;46791;46792;46793;46794	63630;63631;63632;63633;63634;63635;63636;63637;63638;63639	63634			10	
DGVGMVEYLR	0	Unmodified	1137.5488	0.54884425	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.526	62.9	2	0.00050101	57119	160511_QHF_FH_JSI11i_1	72.643	55.131			0.71394	0.77011	35.844	4	1	Median	1.269	1.0446	NaN	1	0	Median	0.7253	0.86889	NaN	1	1	Median	0.70276	0.68255	NaN	1	0	Median	0.44223	0.45564	NaN	1	0	Median	285750000	148720000	137030000	62508000	21419000	41089000	64383000	31837000	32546000	104670000	59329000	45343000	54186000	36132000	18053000	7558	2376	7141	46795;46796;46797;46798	63640;63641;63642;63643;63644;63645	63640			6	
DGVGMVEYLRK	1	Unmodified	1265.6438	0.64380726	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.563	53.325	2	0.0096917	45706	160511_QHF_FH_JSI12i_3	63.426	52.903			0.097731	0.097952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.097731	0.097952	NaN	1	1	Median	29638000	25246000	4391200	0	0	0	0	0	0	0	0	0	29638000	25246000	4391200	7559	2376	7142	46799	63646	63646			1	
DGVHFKPK	2	Unmodified	926.4974	0.49740102	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	2	1	1	13.469	10.527	3	0.0034166	8475	160511_QHF_FH_JSI10i_3	51.854	40.444			0.66943	0.76665	57.412	5	0	Median	2.993	2.6414	NaN	1	0	Median	0.61744	0.71996	8.8866	2	0	Median	1.0363	0.98393	NaN	1	0	Median	0.66943	0.67655	NaN	1	0	Median	1241000000	765470000	475550000	1704200	447000	1257200	158370000	84394000	73972000	413470000	232160000	181310000	667480000	448460000	219020000	7560	1388	7143	46800;46801;46802;46803;46804	63647;63648;63649;63650;63651;63652;63653	63650			7	
DGVHFKPK	2	Acetyl (K)	968.50797	0.50796571	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		32.964	23.432	3	0.0062956	14059	160513_QHF_FH_JSI11Kac_5	53.968	40.979			0.70026	0.73899	136.67	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7084	1.9425	NaN	1	0	Median	0.28704	0.28114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13514000	9238300	4275200	0	0	0	2192800	776660	1416100	11321000	8461700	2859100	0	0	0	7561	1388	7143	46805;46806	63654	63654	1342		1	
DGVIEASINHEK	1	Unmodified	1310.6466	0.64664404	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	31.179	30.26	2	2.6939E-05	25525	160511_QHF_FH_JSI12i_2	114.83	80.301			1.0589	1.0525	28.409	4	4	Median	1.461	1.277	NaN	1	1	Median	1.2793	1.5058	NaN	1	1	Median	0.87639	0.86756	NaN	1	1	Median	0.78065	0.85226	NaN	1	1	Median	95762000	42320000	53442000	18823000	6136500	12687000	16373000	8297200	8076300	42488000	18938000	23550000	18077000	8948000	9129300	7562	313	7144	46807;46808;46809;46810	63655;63656;63657;63658	63655			4	
DGVLEEQIER	0	Unmodified	1186.583	0.58298115	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	43.044	41.827	2	2.8812E-09	38036	160511_QHF_FH_JSI12i_1	127.94	103.82			1.1027	0.91547	NaN	1	0	Median	1.1027	0.91547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94883000	39854000	55028000	94883000	39854000	55028000	0	0	0	0	0	0	0	0	0	7563	2284	7145	46811;46812	63659;63660	63659			2	
DGVLPVK	1	Unmodified	726.42759	0.42759012	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		33.372	32.761	2	0.016755	28683	160511_QHF_FH_JSI9i_1	63.148	8.6224			0.75603	0.89029	51.194	3	3	Median	0.56424	0.45753	NaN	1	1	Median	0.75603	0.89029	NaN	1	1	Median	1.3139	1.2519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	218960000	150050000	68914000	82706000	60766000	21940000	89259000	65281000	23979000	46994000	23999000	22996000	0	0	0	7564	4678	7146	46813;46814;46815	63661;63662;63663	63663			3	
DGVLTLANNVTPAK	1	Unmodified	1411.7671	0.76709352	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.66	5				1	2				1	3	3	1	66.331	63.439	2;3	1.4067E-21	57298	160511_QHF_FH_JSI10i_1	216.91	190.24			0.68846	0.71556	32.406	7	4	Median	0.86316	0.69945	NaN	1	1	Median	0.64388	0.75285	6.3136	2	1	Median	0.7243	0.71556	22.534	3	1	Median	0.34253	0.3504	NaN	1	1	Median	886490000	507340000	379150000	268440000	143980000	124460000	211940000	125860000	86085000	231730000	115970000	115760000	174380000	121540000	52845000	7565	1298	7147	46816;46817;46818;46819;46820;46821;46822;46823	63664;63665;63666;63667;63668;63669;63670;63671;63672;63673	63670			10	
DGVLVDEFGLPQIPAS	0	Unmodified	1655.8407	0.8406524	5169	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	102.16	102.03	2	3.861E-05	92650	160511_QHF_FH_JSI12i_1	125.68	115.99			0.69867	0.71992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69867	0.71992	NaN	1	0	Median	99120000	44670000	54450000	0	0	0	0	0	0	0	0	0	99120000	44670000	54450000	7566	5169	7148	46824	63674;63675	63675			2	
DGVMEMNSIEPAK	1	Unmodified	1419.6374	0.63740126	987	P11169	SLC2A3	Solute carrier family 2, facilitated glucose transporter member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	53.59	53.096	2	9.1873E-06	47788	160511_QHF_FH_JSI10i_1	132.32	116.12			0.63762	0.74597	29.36	3	3	Median	NaN	NaN	NaN	0	0	Median	0.63762	0.74597	NaN	1	1	Median	1.0431	1.0012	NaN	1	1	Median	0.52982	0.55654	NaN	1	1	Median	451360000	258550000	192810000	0	0	0	156780000	99483000	57297000	148740000	70891000	77854000	145830000	88172000	57660000	7567	987	7149	46825;46826;46827	63676;63677;63678	63678			3	
DGVPEGAQLQGPVHR	0	Unmodified	1558.7852	0.7852032	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	4.61	8	3					2			2	4	5	2	38.264	35.924	2;3	3.1873E-15	32486	160511_QHF_FH_JSI11i_1	130.24	114.48			1.2042	1.1233	34.544	11	1	Median	1.4822	1.2134	23.459	2	0	Median	0.95735	1.1233	34.974	3	0	Median	1.2379	1.2109	19.694	4	1	Median	0.60014	0.62357	14.741	2	0	Median	1420700000	712170000	708500000	141330000	50852000	90480000	450720000	235000000	215720000	516670000	224870000	291790000	311960000	201450000	110510000	7568	1106	7150	46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840	63679;63680;63681;63682;63683;63684;63685;63686;63687;63688;63689;63690;63691;63692;63693;63694;63695;63696;63697	63680			19	
DGVPIGYK	1	Unmodified	847.44397	0.44396847	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	4.47	5					1				2		2	2	35.971	33.786	2	0.011712	29717	160511_QHF_FH_JSI9i_1	62.717	42.162			1.1552	1.055	49.771	6	5	Median	1.8414	1.5061	55.253	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6799	1.6422	63.222	2	1	Median	0.85156	0.87714	26.748	2	2	Median	557620000	228920000	328700000	188590000	74480000	114110000	0	0	0	146240000	39896000	106340000	222790000	114550000	108250000	7569	335	7151	46841;46842;46843;46844;46845;46846	63698;63699;63700;63701;63702;63703;63704	63704			7	
DGVREVFEMATR	0	Unmodified	1408.6769	0.67689831	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		64.302	63.55	3	0.00011238	53193	160511_QHF_FH_JSI10i_3	76.357	69.469			1.2825	1.3728	5.5428	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2025	1.4276	NaN	1	0	Median	1.3678	1.32	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117900000	53288000	64609000	0	0	0	55692000	25548000	30145000	62205000	27741000	34464000	0	0	0	7570	1957	7152	46847;46848;46849	63705;63706;63707;63708	63707			4	
DGVSAAVISAELASFLATK	1	Unmodified	1848.9833	0.98329389	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			102.99	102.93	3	2.9748E-08	91498	160511_QHF_FH_JSI10i_2	104.89	93.28			1.0092	1.0314	6.6458	2	0	Median	1.2622	1.0811	NaN	1	0	Median	0.80698	0.98409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42194000	20738000	21456000	21046000	8258600	12787000	21149000	12480000	8668800	0	0	0	0	0	0	7571	4080	7153	46850;46851	63709	63709			1	
DGVTGPGFTLSGSCCQGSR	0	Unmodified	1941.8309	0.83090912	670	O95274	LYPD3	Ly6/PLAUR domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		53.601	53.19	2	0.021646	48169	160511_QHF_FH_JSI11i_1	61.212	50.602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9761600	0	9761600	0	0	0	0	0	0	9761600	0	9761600	0	0	0	7572	670	7154	46852	63710	63710			1	
DGVTLYLLQSVNQLLLTATK	1	Unmodified	2189.2307	0.2307348	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6.67	6.6		2							1		1	2		104.4	102.43	3	4.8528E-11	58063	160513_QHF_FH_JSI10Kac_6	118.46	100.88			1.4992	1.7367	12.01	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4992	1.7367	NaN	1	0	Median	1.4606	1.4279	5.7385	2	2	Median	NaN	NaN	NaN	0	0	Median	72643000	40630000	32013000	0	0	0	51572000	31302000	20269000	21072000	9327700	11744000	0	0	0	7573	28	7155	46853;46854;46855	63711;63712;63713	63713			3	
DGVTPIK	1	Unmodified	728.40685	0.40685468	1853	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	18.44	18.145	2	0.020108	15693	160511_QHF_FH_JSI12i_1	57.281	34.262			0.59879	0.61381	15.012	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69431	0.68255	NaN	1	0	Median	0.5164	0.55199	NaN	1	0	Median	80987000	53027000	27959000	0	0	0	0	0	0	44613000	29185000	15428000	36374000	23843000	12531000	7574	1853	7156	46856;46857	63714	63714			1	
DGVTVAK	1	Unmodified	688.37555	0.37555455	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.67	5.41	1		2		1	1	1			1		3	2	12.435	7.9034	2	0.011216	8491	160511_QHF_FH_JSI11i_3	62.659	19.592			0.84368	0.90643	49.574	5	1	Median	1.4146	1.1566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65873	0.64288	85.667	2	1	Median	0.81699	0.88335	3.6475	2	0	Median	3995900000	2130500000	1865300000	286290000	112360000	173930000	0	0	0	3686900000	2006700000	1680200000	22642000	11425000	11217000	7575	980	7157	46858;46859;46860;46861;46862;46863	63715;63716;63717;63718	63715			4	
DGVTVAVISGEALGIK	1	Unmodified	1527.8508	0.85082315	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	3	3	92.052	91.692	2;3	1.7398E-05	83369	160511_QHF_FH_JSI10i_1	141.38	126.96			0.82149	0.85904	29.245	10	4	Median	1.1528	0.95068	36.865	2	0	Median	0.72654	0.86281	9.9336	3	2	Plateau	1.0154	0.96188	19.795	3	1	Median	0.51094	0.53249	28.253	2	1	Median	317940000	162120000	155810000	50640000	20154000	30485000	119580000	65449000	54127000	86156000	39347000	46809000	61565000	37173000	24392000	7576	157	7158	46864;46865;46866;46867;46868;46869;46870;46871;46872;46873;46874	63719;63720;63721;63722;63723;63724;63725;63726;63727;63728;63729	63725			11	
DGVVEITGK	1	Unmodified	916.48656	0.48656157	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.7	8				3	3				2	4	4	4	35.765	31.627	2	5.1637E-06	28729	160511_QHF_FH_JSI11i_1	133.23	78.623			0.82257	0.9508	63.28	14	8	Median	1.5401	1.2908	104.42	2	2	Median	0.80382	0.95722	63.775	4	2	Median	1.0433	1.0207	60.337	4	2	Median	0.70485	0.75039	73.079	4	2	Median	17457000000	8534100000	8922800000	4116500000	1897300000	2219200000	5092000000	2615800000	2476200000	4882800000	2350200000	2532600000	3365500000	1670800000	1694700000	7577	814	7159	46875;46876;46877;46878;46879;46880;46881;46882;46883;46884;46885;46886;46887;46888	63730;63731;63732;63733;63734;63735;63736;63737;63738;63739;63740;63741;63742;63743;63744;63745;63746;63747;63748;63749;63750;63751;63752;63753;63754;63755;63756	63731			27	
DGVVEITGKHEER	1	Unmodified	1467.7318	0.73177065	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	19.58	19.586	3	0.00048481	15885	160511_QHF_FH_JSI12i_3	73.91	52.957			0.6224	0.60077	82.151	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37394	0.33607	NaN	1	1	Median	1.0359	1.074	NaN	1	1	Median	108990000	61142000	47846000	0	0	0	0	0	0	34116000	24662000	9453700	74872000	36480000	38392000	7578	814	7160	46889;46890	63757;63758	63758			2	
DGVVEITGKHEER	1	Acetyl (K)	1509.7423	0.74233534	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							5				2		3	42.542	32.564	2;3	0.0001808	19179	160513_QHF_FH_JSI12Kac_4	100.72	85.75			0.61035	0.69107	33.572	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73983	0.87623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50353	0.54504	NaN	1	0	Median	15553000	9868100	5685200	0	0	0	6602400	4017400	2585000	0	0	0	8950800	5850700	3100200	7579	814	7160	46891;46892;46893;46894;46895	63759;63760;63761;63762;63763;63764;63765	63764	460		7	
DGVVFGVEK	1	Unmodified	948.49165	0.49164694	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.09	5					3	1			1	3	3	2	50.017	46.111	1;2	9.3524E-05	41889	160511_QHF_FH_JSI12i_1	106.42	79.461			0.96349	1.0341	53.763	8	1	Median	1.5804	1.2932	NaN	1	0	Median	0.72941	0.87085	7.2125	2	0	Median	1.2133	1.1728	69.016	3	1	Median	0.71491	0.74802	9.6776	2	0	Median	2692000000	1316900000	1375100000	697820000	243950000	453870000	685620000	408910000	276710000	796080000	371060000	425020000	512510000	293030000	219480000	7580	1266	7161	46896;46897;46898;46899;46900;46901;46902;46903;46904	63766;63767;63768;63769;63770;63771;63772;63773;63774;63775;63776;63777;63778;63779;63780;63781;63782;63783;63784;63785	63771			20	
DGVVLFK	1	Unmodified	776.44324	0.44324019	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.98	7	4				4	2	1		4	4	5	5	57.034	52.912	2	0.0012008	7028	160513_QHF_FH_JSI9Kac_3	86.866	61.248			1.3537	1.24	39.187	14	7	Median	1.883	1.5032	38.428	3	1	Median	0.90399	1.0464	27.362	3	1	Median	1.4693	1.442	20.42	4	3	Median	0.8859	0.96084	61.922	4	2	Median	5560700000	2768300000	2792400000	1356600000	517790000	838780000	1485300000	809450000	675860000	1491000000	698320000	792720000	1227800000	742750000	485010000	7581	867	7162	46905;46906;46907;46908;46909;46910;46911;46912;46913;46914;46915;46916;46917;46918;46919;46920;46921;46922	63786;63787;63788;63789;63790;63791;63792;63793;63794;63795;63796;63797;63798;63799;63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812;63813;63814;63815;63816	63803			31	
DGVVLFKK	2	Acetyl (K)	946.54877	0.54876789	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		68.48	57.457	2	0.020173	31761	160513_QHF_FH_JSI11Kac_4	72.789	47.97			0.015961	0.015648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.015961	0.015648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13997000	13823000	174090	0	0	0	0	0	0	13997000	13823000	174090	0	0	0	7582	867	7163	46923	63817	63817	566		1	
DGVVLFKK	2	Unmodified	904.5382	0.53820321	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.355	38.175	2	0.011326	32524	160511_QHF_FH_JSI12i_3	72.138	57.725			0.95846	0.97267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95846	0.97267	NaN	1	1	Median	57144000	34265000	22879000	0	0	0	0	0	0	0	0	0	57144000	34265000	22879000	7583	867	7163	46924	63818	63818			1	
DGVVRPLK	1	Unmodified	882.5287	0.52870115	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							3	3	4	5	17.847	17.388	2;3	0.00068822	14294	160511_QHF_FH_JSI11i_3	86.953	62.031			1.0962	1.1176	68.661	15	4	Median	1.2755	1.0935	24.264	3	0	Median	0.95159	1.1176	10.148	3	0	Median	1.1492	1.1486	5.7175	4	0	Median	0.50125	0.55499	111.26	5	4	Median	8422800000	4330800000	4092100000	822590000	362510000	460080000	1474900000	811450000	663450000	3304400000	1432500000	1871900000	2820900000	1724300000	1096600000	7584	1650	7164	46925;46926;46927;46928;46929;46930;46931;46932;46933;46934;46935;46936;46937;46938;46939	63819;63820;63821;63822;63823;63824;63825;63826;63827;63828;63829;63830;63831;63832;63833;63834;63835;63836;63837	63819			19	
DGVVTIGCVGFPNVGK	1	Unmodified	1617.8185	0.81847717	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.802	82.44	2	0.00059067	75105	160511_QHF_FH_JSI11i_1	67.385	51.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7585	1463	7165	46940	63838	63838			1	
DGVWKPTLVILR	1	Unmodified	1395.8238	0.82382054	3879	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		81.498	79.45	3	0.0018266	67862	160511_QHF_FH_JSI10i_3	54.7	42.431			0.81528	0.8518	14.362	4	0	Median	1.3584	1.1133	NaN	1	0	Median	0.75287	0.8518	1.3002	2	0	Median	0.87912	0.81267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205800000	109700000	96098000	22974000	8201700	14773000	113910000	67329000	46583000	68914000	34171000	34743000	0	0	0	7586	3879	7166	46941;46942;46943;46944	63839;63840;63841;63842;63843;63844;63845;63846	63840			8	
DGVWNLQNEVTK	1	Unmodified	1401.6888	0.6888432	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	63.629	62.782	2	1.7688E-05	55730	160511_QHF_FH_JSI9i_1	91.937	79.724			0.94125	0.8648	92.118	2	2	Median	2.0247	1.6588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43756	0.45084	NaN	1	1	Median	206900000	106050000	100850000	72368000	24984000	47383000	0	0	0	0	0	0	134540000	81066000	53469000	7587	3101	7167	46945;46946;46947;46948	63847;63848;63849;63850	63850			4	
DGVYFLYEALHGPPK	1	Unmodified	1704.8512	0.8511575	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		10							2	2	5	3	2	94.965	93.717	2;3	5.9042E-08	84523	160511_QHF_FH_JSI9i_2	90.367	72.45			0.66995	0.6383	70.338	10	9	Median	0.66554	0.57638	NaN	1	1	Median	0.44502	0.5409	72.748	4	4	Median	1.0415	1.0622	77.913	3	2	Median	0.46125	0.50404	50.946	2	2	Median	262660000	162440000	100220000	12063000	6536600	5526000	168350000	114540000	53805000	50463000	20622000	29841000	31787000	20737000	11050000	7588	1356	7168	46949;46950;46951;46952;46953;46954;46955;46956;46957;46958;46959;46960	63851;63852;63853;63854;63855;63856;63857;63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868	63856			18	
DGVYFLYEALHGPPKK	2	Unmodified	1832.9461	0.94612052	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	1	2	3	4	83.392	80.407	3;4	1.4851E-07	41914	160513_QHF_FH_JSI10Kac_6	107.98	103.87			0.99111	1.169	99.677	10	5	Median	2.8019	2.3576	NaN	1	0	Median	0.98798	1.169	37.715	2	1	Median	2.5687	2.3543	88.335	3	3	Median	0.43229	0.44999	119.58	4	1	Median	568340000	270820000	297520000	59616000	12259000	47357000	259810000	122470000	137350000	66699000	23416000	43284000	182210000	112680000	69535000	7589	1356	7169	46961;46962;46963;46964;46965;46966;46967;46968;46969;46970	63869;63870;63871;63872;63873;63874;63875;63876;63877;63878;63879;63880	63878			12	
DGVYVLDLAAK	1	Unmodified	1162.6234	0.6233894	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.24	7					3	3			4	3	2	4	74.943	69.533	2	5.9766E-08	69417	160511_QHF_FH_JSI11i_1	125.97	103.73			0.90111	0.95977	50.273	13	3	Median	1.3626	1.1141	54.639	4	2	Median	0.67369	0.79046	19.832	3	0	Plateau	1.1715	1.1573	4.5126	2	0	Median	0.53743	0.57748	31.574	4	1	Median	1910000000	883440000	1026600000	576200000	165790000	410410000	426220000	211860000	214360000	361160000	171800000	189360000	546430000	333990000	212450000	7590	1798	7170	46971;46972;46973;46974;46975;46976;46977;46978;46979;46980;46981;46982;46983	63881;63882;63883;63884;63885;63886;63887;63888;63889;63890;63891;63892	63881			11	
DGWGGYGSDK	1	Unmodified	1040.4199	0.41993856	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	0		By MS/MS			1	0	1										1			27.898	27.579	2	0.0021201	24495	160511_QHF_FH_JSI10i_1	61.78	50.268			0.75082	0.86785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75082	0.86785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27280000	15779000	11501000	0	0	0	27280000	15779000	11501000	0	0	0	0	0	0	7591	2670;2501	7171	46984	63893	63893			1	
DGWPAMCIHGDK	1	Unmodified	1385.5856	0.58564046	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.396	48.871	2	0.00048451	42110	160511_QHF_FH_JSI11i_2	85.958	78.679			1.5444	1.585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5444	1.585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23115000	9654000	13461000	0	0	0	0	0	0	23115000	9654000	13461000	0	0	0	7592	3893	7172	46985	63894	63894			1	
DGWPAMGIHGDK	1	Unmodified	1282.5765	0.57645598	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	3	1	46.539	45.674	3	7.7092E-05	38974	160511_QHF_FH_JSI12i_2	72.496	66.837			1.0141	1.2615	26.361	5	1	Median	1.5295	1.2953	NaN	1	0	Median	1.0141	1.2615	NaN	1	0	Median	1.1997	1.1871	30.664	2	1	Median	0.68238	0.76847	NaN	1	0	Median	713900000	335300000	378610000	94834000	36324000	58511000	175710000	91559000	84154000	292970000	107620000	185340000	150390000	99789000	50602000	7593	1128	7173	46986;46987;46988;46989;46990;46991;46992	63895;63896;63897;63898;63899;63900;63901;63902;63903;63904	63897			10	
DGWQDIVIGAPQYFDR	0	Unmodified	1878.8901	0.89006221	1221	P23229	ITGA6	Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		63.888	63.888	3	0.051726	56870	160511_QHF_FH_JSI11i_3	20.048	6.6298			0.94482	0.89848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94482	0.89848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80452000	45810000	34642000	0	0	0	0	0	0	80452000	45810000	34642000	0	0	0	7594	1221	7174	46993	63905	63905			1	
DGWSLWYSEYR	0	Unmodified	1460.6361	0.63607935	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	84.417	76.404	2	1.1047E-27	42884	160513_QHF_FH_JSI10Kac_6	188.04	170.22			0.85574	0.91297	46.814	6	2	Median	1.4963	1.2993	NaN	1	0	Median	0.94399	1.132	27.528	2	1	Median	0.94257	0.89459	NaN	1	0	Median	0.44779	0.47548	1.985	2	1	Median	1430000000	752910000	677060000	250060000	105260000	144810000	501310000	267990000	233320000	431130000	214240000	216890000	247470000	165420000	82053000	7595	1284	7175	46994;46995;46996;46997;46998;46999	63906;63907;63908;63909;63910;63911;63912;63913;63914;63915	63914			10	
DGYAQILR	0	Unmodified	934.48723	0.48723027	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	46.684	41.78	2	2.9112E-05	37943	160511_QHF_FH_JSI10i_1	138.24	109.73			0.88524	0.87352	26.452	7	1	Median	1.4898	1.2228	NaN	1	1	Median	0.79108	0.91057	13.857	2	0	Median	1.0125	1.0051	19.842	2	0	Median	0.60872	0.63626	7.0954	2	0	Median	652240000	367890000	284350000	122870000	44682000	78192000	173370000	110690000	62677000	200110000	104610000	95496000	155890000	107910000	47981000	7596	4315	7176	47000;47001;47002;47003;47004;47005;47006	63916;63917;63918;63919;63920;63921;63922;63923;63924	63920			9	
DGYIMMFNYLPITFGDK	1	Unmodified	2023.9424	0.94235705	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	12.5	6.06		1							3	2		1	1	99.595	92.58	2	1.4979E-96	51077	160513_QHF_FH_JSI11Kac_6	239.19	221.06			1.0438	0.99004	57.067	3	0	Median	2.1473	1.7976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0438	0.99004	NaN	1	0	Median	0.54203	0.57437	NaN	1	0	Median	616380000	301050000	315320000	208460000	58425000	150030000	0	0	0	230180000	119530000	110650000	177740000	123100000	54639000	7597	3860	7177	47007;47008;47009;47010	63925;63926;63927;63928;63929;63930	63926			6	
DGYNYTLSK	1	Unmodified	1059.4873	0.48728985	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.11	11	3	1		3	4	4	1	1	6	6	7	9	36.461	31.635	2	1.2851E-23	29126	160511_QHF_FH_JSI11i_1	195.17	173.04			0.90005	0.96053	54.305	27	4	Median	1.2736	1.0586	32.699	5	1	Median	0.79676	0.94014	18.26	6	0	Median	0.98999	0.97088	27.826	7	1	Median	0.64787	0.67735	89.822	9	2	Median	23657000000	11406000000	12251000000	4928400000	1703500000	3224800000	6245300000	3067600000	3177600000	6522600000	3139100000	3383500000	5961200000	3496000000	2465200000	7598	1387	7178	47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030;47031;47032;47033;47034;47035;47036;47037;47038	63931;63932;63933;63934;63935;63936;63937;63938;63939;63940;63941;63942;63943;63944;63945;63946;63947;63948;63949;63950;63951;63952;63953;63954;63955;63956;63957;63958;63959;63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972	63931			42	
DGYQQNFK	1	Unmodified	998.44576	0.44575938	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.65	4		1			3				1	3	2	2	21.15	17.689	2	8.2312E-07	10529	160513_QHF_FH_JSI12Kac_3	138.62	109.04			0.82652	0.97085	35.386	7	0	Median	1.7661	1.4367	NaN	1	0	Median	0.74782	0.88249	15.006	2	0	Median	1.1319	1.0978	17.378	2	0	Median	0.53539	0.57554	3.2274	2	0	Median	1631500000	740510000	891010000	289280000	107740000	181550000	464700000	206110000	258590000	485420000	176450000	308970000	392120000	250210000	141910000	7599	2536	7179	47039;47040;47041;47042;47043;47044;47045;47046	63973;63974;63975;63976;63977;63978;63979;63980;63981;63982;63983;63984	63983			12	
DHADSNIVIMLVGNK	1	Unmodified	1624.8243	0.82429083	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2	0		5								1	1	1	2	80.965	80.182	2;3	0.0097066	71358	160511_QHF_FH_JSI10i_2	45.614	20.893			0.59369	0.6993	26.723	4	1	Linear	0.62182	0.53802	NaN	1	0	Median	0.31214	0.38588	NaN	1	1	Median	0.66023	0.70337	NaN	1	0	Median	0.56682	0.65016	NaN	1	0	Median	121120000	74873000	46248000	24526000	13641000	10885000	22330000	15311000	7019100	38639000	22073000	16566000	35625000	23848000	11777000	7600	2009;2722	7180	47047;47048;47049;47050;47051	63985;63986;63987	63987			3	
DHAGVMGESNR	0	Unmodified	1171.504	0.50401932	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	8.5427	8.132	2	0.0016653	5864	160511_QHF_FH_JSI11i_2	66.595	57.008			1.697	1.7642	26.672	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4741	1.461	NaN	1	1	Median	1.9535	2.1304	NaN	1	1	Median	45020000	18919000	26101000	0	0	0	0	0	0	26205000	11711000	14494000	18815000	7208000	11607000	7601	1769	7181	47052;47053;47054	63988;63989;63990	63990			3	
DHAISLSEPR	0	Unmodified	1123.5622	0.56218613	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		25.683	25.324	2	0.0026371	21102	160511_QHF_FH_JSI11i_2	72.643	56.981			0.71401	0.70897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71401	0.70897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46489000	24076000	22413000	0	0	0	0	0	0	46489000	24076000	22413000	0	0	0	7602	5646	7182	47055	63991	63991			1	
DHASIQMNVAEVDK	1	Unmodified	1555.7301	0.73005609	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	2.56	14	9	9						1	11	7	7	8	43.69	42.501	2;3	7.1719E-52	37928	160511_QHF_FH_JSI9i_1	216.03	181.34			0.89258	0.89116	30.519	29	13	Median	1.0914	0.89116	38.401	9	1	Median	0.74422	0.88815	23.02	7	4	Median	0.82496	0.79616	29.098	7	4	Median	0.93379	1.0153	24.579	6	4	Median	8407200000	4182200000	4225100000	1568100000	709310000	858750000	2131300000	1145800000	985490000	2146200000	1155000000	991220000	2561700000	1172100000	1389600000	7603	2059	7183	47056;47057;47058;47059;47060;47061;47062;47063;47064;47065;47066;47067;47068;47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088	63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002;64003;64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020;64021;64022;64023;64024;64025;64026;64027;64028;64029;64030;64031;64032;64033;64034;64035;64036;64037;64038;64039;64040;64041;64042;64043;64044;64045;64046;64047;64048	64025			56	
DHASIQMNVAEVDK	1	Oxidation (M)	1571.725	0.72497071	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.76	10					1	3			3	5	2	4	32.276	28.896	2;3	4.9179E-05	25970	160511_QHF_FH_JSI12i_1	93.478	88.587			0.95172	0.97524	28.319	13	5	Median	1.2749	1.0513	11.801	3	3	Median	0.80552	0.97524	43.488	5	2	Median	0.86793	0.84517	NaN	1	0	Median	0.93751	0.99642	19.974	4	0	Median	479680000	238410000	241270000	117180000	49785000	67392000	149160000	83091000	66069000	58583000	29384000	29199000	154760000	76151000	78606000	7604	2059	7183	47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100;47101;47102	64049;64050;64051;64052;64053;64054;64055;64056;64057;64058;64059;64060;64061;64062;64063;64064;64065	64052		1717	17	
DHASNIYK	1	Unmodified	946.45084	0.45084476	1624	P48509	CD151	CD151 antigen	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.2677	8.0706	2	0.009583	5688	160511_QHF_FH_JSI11i_2	55.902	41.489			0.72106	0.71389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72106	0.71389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101260000	46230000	55031000	0	0	0	0	0	0	101260000	46230000	55031000	0	0	0	7605	1624	7184	47103	64066;64067	64066			2	
DHAVFTR	0	Unmodified	844.41915	0.4191507	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	11.348	11.056	2	0.010355	8342	160511_QHF_FH_JSI12i_3	75.189	65.44			0.98903	0.93648	26.987	5	0	Median	1.0113	0.85929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88629	0.8586	12.278	2	0	Median	1.2404	1.3162	23.979	2	0	Median	936970000	436000000	500970000	159150000	76394000	82753000	0	0	0	456580000	214010000	242570000	321240000	145590000	175650000	7606	1376	7185	47104;47105;47106;47107;47108	64068;64069;64070;64071;64072;64073;64074	64074			7	
DHAVVVGVYRPPPK	1	Unmodified	1532.8463	0.8463469	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		10.4	6.43			3						4	1	3	3		37.861	33.071	3	0.0059167	27722	160511_QHF_FH_JSI10i_3	44.426	39.347			1.0633	1.0239	17.65	6	2	Median	1.1775	0.99615	NaN	1	0	Median	0.76868	0.87398	26.269	2	0	Median	1.1699	1.1177	15.893	3	2	Median	NaN	NaN	NaN	0	0	Median	135010000	72186000	62826000	7219400	3164100	4055300	24810000	14187000	10623000	102980000	54835000	48148000	0	0	0	7607	1203	7186	47109;47110;47111;47112;47113;47114;47115	64075;64076;64077;64078;64079;64080;64081	64077			7	
DHCVAHKLFNNLK	2	Acetyl (K)	1636.8144	0.81439484	2	A0A096LP55;P07919	UQCRHL;UQCRH	Cytochrome b-c1 complex subunit 6;Cytochrome b-c1 complex subunit 6, mitochondrial	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	62.529	53.328	2;3	0.00034063	29047	160513_QHF_FH_JSI11Kac_6	94.692	79.153			0.48232	0.48316	118.45	2	1	Median	0.24229	0.20909	NaN	1	1	Median	0.96014	1.1165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69228000	41262000	27966000	10982000	8227100	2754900	50511000	29327000	21184000	7735000	3708000	4026900	0	0	0	7608	2	7187	47116;47117;47118;47119;47120	64082;64083;64084;64085;64086;64087;64088	64083	0		7	
DHDVMLFLK	1	Unmodified	1116.5638	0.56376603	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	66.728	65.915	3	0.0025999	58481	160511_QHF_FH_JSI10i_2	57.96	50.035			0.58299	0.6122	60.779	4	4	Median	NaN	NaN	NaN	0	0	Median	0.25581	0.31561	NaN	1	1	Median	0.83996	0.81033	68.732	2	2	Median	0.66657	0.75197	NaN	1	1	Median	47870000	30012000	17859000	0	0	0	9547600	7442100	2105500	28950000	14651000	14299000	9372900	7918900	1454000	7609	3922	7188	47121;47122;47123;47124;47125	64089;64090;64091;64092;64093	64093			5	
DHEDYDPQTVR	0	Unmodified	1373.5848	0.58477206	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	5									1	1	1	2	17.55	17.073	2;3	0.013574	14448	160511_QHF_FH_JSI9i_1	43.512	39.214			1.0345	1.0239	13.337	5	1	Median	1.5109	1.206	NaN	1	0	Median	0.71784	0.83944	NaN	1	0	Median	1.0622	1.013	NaN	1	0	Median	0.99639	1.0604	4.9549	2	1	Median	173580000	86441000	87135000	25195000	9702700	15493000	28862000	18641000	10221000	32664000	15127000	17537000	86855000	42970000	43885000	7610	3921	7189	47126;47127;47128;47129;47130	64094;64095;64096	64096			2	
DHENIVIAK	1	Unmodified	1037.5506	0.55055881	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.8	9	12	3				6	4		7	9	6	12	24.683	21.605	2;3	1.851E-05	17717	160511_QHF_FH_JSI11i_2	107.66	72.857			0.94032	0.91899	48.444	33	18	Median	1.0764	0.89333	34.169	7	4	Median	0.74256	0.86118	60.412	9	6	Median	0.99199	0.98955	25.156	6	1	Median	1.0324	1.071	54.516	11	7	Median	13426000000	6492000000	6933900000	1688300000	818520000	869740000	3904200000	1932200000	1972000000	2787900000	1454200000	1333700000	5045500000	2287000000	2758400000	7611	867	7190	47131;47132;47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143;47144;47145;47146;47147;47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161;47162;47163;47164	64097;64098;64099;64100;64101;64102;64103;64104;64105;64106;64107;64108;64109;64110;64111;64112;64113;64114;64115;64116;64117;64118;64119;64120;64121;64122;64123;64124;64125;64126;64127;64128;64129;64130;64131;64132;64133;64134;64135;64136;64137;64138;64139;64140;64141	64127			45	
DHFEEAMR	0	Unmodified	1033.4287	0.42872911	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	18.158	17.497	2;3	0.00025051	14205	160511_QHF_FH_JSI11i_2	116.3	110.82			0.93092	0.84682	15.942	9	0	Median	1.0664	0.91059	18.915	2	0	Median	0.6906	0.84552	0.21718	2	0	Median	1.026	1.0571	5.6815	3	0	Median	0.67612	0.75461	1.9567	2	0	Median	2411000000	1236400000	1174600000	341280000	184360000	156920000	605050000	335910000	269140000	979120000	461780000	517330000	485550000	254320000	231230000	7612	1846	7191	47165;47166;47167;47168;47169;47170;47171;47172;47173	64142;64143;64144;64145;64146;64147;64148;64149	64147			7	
DHFEEAMR	0	Oxidation (M)	1049.4236	0.42364373	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	18.176	17.447	2	0.0115	14341	160511_QHF_FH_JSI12i_2	58.917	52.093			1.2849	1.4506	47.417	4	0	Median	1.6735	1.4376	NaN	1	0	Median	1.2616	1.5428	NaN	1	0	Median	0.57343	0.57469	NaN	1	0	Median	1.3085	1.4638	NaN	1	0	Median	292450000	158140000	134310000	55810000	25682000	30128000	58386000	29271000	29115000	107690000	64932000	42759000	70566000	38255000	32312000	7613	1846	7191	47174;47175;47176;47177	64150;64151;64152	64150		1522	3	
DHFGLEGDEESTMLEDSVSPK	1	Unmodified	2321.0005	0.0005364496	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	1	0	3									1	1		1	72.113	71.54	3	1.8831E-07	64877	160511_QHF_FH_JSI10i_1	84.66	75.951			0.81826	0.87874	4.4711	3	0	Median	1.0748	0.87874	NaN	1	0	Median	0.80322	0.94211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81826	0.86672	NaN	1	0	Median	152280000	80937000	71345000	34242000	16837000	17405000	58193000	26791000	31403000	0	0	0	59846000	37310000	22536000	7614	5616	7192	47178;47179;47180	64153	64153			1	
DHFGLEGDEESTMLEDSVSPKK	2	Unmodified	2449.0955	0.095499467	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			65.792	64.956	3	2.4387E-13	57649	160511_QHF_FH_JSI10i_2	115.76	112.71			0.90482	1.1134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90482	1.1134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33923000	18856000	15068000	0	0	0	33923000	18856000	15068000	0	0	0	0	0	0	7615	5616	7193	47181	64154;64155	64155			2	
DHGFEVASTSPEDESPGSNPEPDATPFQEGLR	0	Unmodified	3398.4811	0.48110144	1854	P55211	CASP9	Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	71.803	71.433	3	5.3724E-11	65099	160511_QHF_FH_JSI12i_1	73.975	64.092			0.7768	0.82648	15.432	4	4	Median	NaN	NaN	NaN	0	0	Median	0.76592	0.88197	NaN	1	1	Median	0.93412	0.90668	22.286	2	2	Median	0.74337	0.75914	NaN	1	1	Median	149680000	85831000	63847000	0	0	0	35708000	20480000	15229000	82233000	43970000	38263000	31736000	21381000	10355000	7616	1854	7194	47182;47183;47184;47185	64156;64157;64158;64159;64160	64158			5	
DHGGALGPEEFK	1	Unmodified	1255.5833	0.5833155	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3	4	11					1			3	3	5	5	33.252	31.913	2;3	2.3512E-05	27679	160511_QHF_FH_JSI9i_2	69.261	65.729			1.0624	1.1324	55.249	16	4	Median	0.86851	0.75231	63.525	3	1	Median	0.53959	0.63717	20.719	3	0	Median	1.7243	1.7204	37.589	5	2	Median	0.9991	1.119	37.264	5	1	Median	1560600000	704680000	855930000	216110000	111730000	104370000	262400000	165330000	97077000	746340000	259710000	486620000	335760000	167910000	167850000	7617	361	7195	47186;47187;47188;47189;47190;47191;47192;47193;47194;47195;47196;47197;47198;47199;47200;47201	64161;64162;64163;64164;64165;64166;64167;64168;64169;64170;64171;64172;64173;64174;64175;64176;64177;64178;64179;64180	64173			20	
DHGVNSFLVYMAFK	1	Unmodified	1626.7864	0.78644876	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.76		2	1						10	2	3	4	4	88.893	81.49	2;3	3.1235E-57	45817	160513_QHF_FH_JSI10Kac_6	244.27	218.15			0.93454	1.0178	18.011	11	5	Median	1.0032	0.85845	44.722	2	0	Median	0.89563	1.0651	16.535	3	2	Median	1.0555	0.97855	7.5168	3	1	Median	0.96821	1.0178	12.771	3	2	Median	1947500000	960970000	986560000	387820000	179580000	208240000	675700000	348770000	326930000	324350000	152610000	171730000	559660000	280010000	279660000	7618	2739	7196	47202;47203;47204;47205;47206;47207;47208;47209;47210;47211;47212;47213;47214	64181;64182;64183;64184;64185;64186;64187;64188;64189;64190;64191;64192;64193;64194;64195;64196;64197	64197			17	
DHGVNSFLVYMAFK	1	Oxidation (M)	1642.7814	0.78136338	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.314								1	8	3	2	2	2	79.854	71.329	2;3	1.6398E-55	37394	160513_QHF_FH_JSI12Kac_6	205.56	194.24			1.1268	1.1573	30.214	9	0	Median	1.1268	0.94859	53.376	3	0	Median	1.0855	1.2909	15.452	2	0	Median	1.3338	1.267	1.7766	2	0	Median	0.89029	0.95457	11.724	2	0	Median	618140000	302200000	315940000	208850000	97445000	111410000	174200000	90245000	83952000	75743000	34023000	41720000	159350000	80489000	78859000	7619	2739	7196	47215;47216;47217;47218;47219;47220;47221;47222;47223	64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209	64207		2119	12	
DHHLVIPSVLQGLK	1	Unmodified	1554.8882	0.88821171	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	75.487	75.345	3	5.532E-05	65014	160511_QHF_FH_JSI12i_3	59.592	57.058			0.86474	0.87848	16.012	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91081	0.85928	26.198	2	0	Median	0.86474	0.87848	8.8254	2	1	Median	195670000	103930000	91740000	0	0	0	0	0	0	81309000	43258000	38050000	114360000	60674000	53690000	7620	4258	7197	47224;47225;47226;47227	64210;64211;64212;64213	64212			3	
DHIMEIFSTYGK	1	Unmodified	1439.6755	0.67550132	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.89		10							7	5	4	4	4	75.275	71.468	2;3	6.0566E-12	36222	160513_QHF_FH_JSI12Kac_6	129.89	111.58			0.86336	0.87323	46.361	16	12	Median	0.80466	0.70449	55.596	4	4	Median	0.77688	0.92473	53.892	4	3	Median	0.86668	0.85645	40.204	4	3	Median	0.84116	0.92185	44.744	4	2	Median	973000000	477460000	495540000	148480000	77226000	71256000	333320000	146810000	186510000	268840000	142060000	126780000	222360000	111370000	110990000	7621	2650	7198	47228;47229;47230;47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244	64214;64215;64216;64217;64218;64219;64220;64221;64222;64223;64224;64225;64226;64227;64228;64229;64230;64231;64232;64233;64234;64235	64233			22	
DHINDIIK	1	Unmodified	966.51345	0.51344502	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	3	4	4	30.482	29.759	2;3	0.00039232	25017	160511_QHF_FH_JSI12i_2	76.478	40.082			0.8618	1.0331	73.242	13	7	Median	1.2576	1.0722	94.146	2	2	Median	0.84387	0.9972	15.654	3	0	Median	1.3716	1.3476	131.02	4	3	Median	1.0547	1.1378	18.715	4	2	Median	1622900000	729860000	893050000	336430000	132270000	204150000	346670000	192070000	154590000	500020000	199910000	300110000	439790000	205600000	234190000	7622	1600	7199	47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257	64236;64237;64238;64239;64240;64241;64242;64243;64244;64245;64246;64247;64248;64249;64250;64251;64252	64239			17	
DHINLPGFSGQNPLRGPNDER	0	Unmodified	2332.1309	0.13085461	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		2	6							6	2			67.288	65.797	3	8.7828E-13	54032	160511_QHF_FH_JSI9i_3	115.34	110.89			1.1304	1.0412	14.862	5	4	Median	1.2799	1.0584	17.109	4	3	Median	0.91392	1.0412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108520000	56966000	51553000	76598000	37480000	39117000	31921000	19486000	12435000	0	0	0	0	0	0	7623	771	7200	47258;47259;47260;47261;47262;47263;47264;47265	64253;64254;64255;64256;64257;64258;64259;64260;64261;64262;64263	64256			11	
DHIPITDSPVVVQQHMLPPK	1	Unmodified	2250.1831	0.1830731	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	68.279	67.377	3	8.3335E-09	58910	160511_QHF_FH_JSI11i_2	106.94	97.898			1.0034	1.0662	35.105	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74315	0.9221	NaN	1	0	Median	1.7571	1.7975	NaN	1	0	Median	1.0034	1.0662	NaN	1	0	Median	110860000	55812000	55053000	0	0	0	28091000	16383000	11708000	58722000	24735000	33987000	24052000	14694000	9358300	7624	558	7201	47266;47267;47268	64264;64265;64266;64267;64268	64266			3	
DHIPITDSPVVVQQHMLPPKK	2	Unmodified	2378.278	0.27803612	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	59.913	59.734	4	6.6109E-05	51671	160511_QHF_FH_JSI12i_3	60.034	51.434			0.96911	0.9147	13.993	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96911	0.9147	NaN	1	0	Median	0.75248	0.80926	17.077	2	1	Median	208790000	138360000	70429000	0	0	0	0	0	0	75887000	48664000	27223000	132910000	89699000	43207000	7625	558	7202	47269;47270;47271	64269;64270;64271	64270			1	
DHLLGVSDSGK	1	Unmodified	1126.5619	0.56185177	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								1	2	3	3	24.972	24.122	2;3	7.9501E-05	20896	160511_QHF_FH_JSI10i_2	100.48	68.542			0.62881	0.69133	55.867	9	7	Median	0.61226	0.53341	NaN	1	1	Median	0.74808	0.91674	91.843	2	2	Median	0.99148	0.9947	58.327	3	2	Median	0.60686	0.69133	54.073	3	2	Median	700380000	345490000	354880000	56889000	29727000	27162000	103310000	63342000	39972000	354190000	154280000	199900000	185990000	98142000	87846000	7626	5536	7203	47272;47273;47274;47275;47276;47277;47278;47279;47280	64272;64273;64274;64275;64276;64277;64278;64279	64279			7	
DHLVTAYNHLFETK	1	Unmodified	1686.8366	0.83657007	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.46		15	2						4	4	4	7	6	60.789	58.192	2;3;4	2.0258E-17	50954	160511_QHF_FH_JSI11i_3	138.75	113.9			0.97254	1.0163	26.979	19	7	Median	1.4287	1.232	16.075	4	0	Median	0.83049	1.0091	10.126	4	2	Median	1.0806	1.0598	34.494	6	3	Median	0.84726	0.91889	37.482	5	2	Median	1549600000	750330000	799230000	238120000	90245000	147880000	406320000	219160000	187170000	595910000	286670000	309240000	309210000	154260000	154950000	7627	2158	7204	47281;47282;47283;47284;47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300;47301	64280;64281;64282;64283;64284;64285;64286;64287;64288;64289;64290;64291;64292;64293;64294;64295;64296;64297;64298;64299;64300;64301;64302;64303;64304;64305;64306;64307	64281			25	
DHLYGTLDPNTR	0	Unmodified	1400.6684	0.66844211	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	36.355	35.331	2;3	1.5598E-07	30130	160511_QHF_FH_JSI11i_2	134.68	128.67			0.78562	0.91266	19.668	5	0	Median	1.2167	1.0065	NaN	1	0	Median	0.74516	0.91266	NaN	1	0	Median	1.0094	1.0063	NaN	1	0	Median	0.65812	0.73361	22.771	2	0	Median	205040000	102200000	102840000	35068000	15211000	19857000	33155000	17434000	15722000	53860000	29028000	24832000	82960000	40526000	42433000	7628	2517	7205	47302;47303;47304;47305;47306	64308;64309;64310;64311;64312;64313;64314;64315	64313			6	
DHMGSVMAQVR	0	Unmodified	1229.5645	0.56451109	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.912	30.532	2	0.046399	25848	160511_QHF_FH_JSI11i_2	44.203	29.052			1.138	1.1441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.138	1.1441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28519000	11000000	17519000	0	0	0	0	0	0	28519000	11000000	17519000	0	0	0	7629	3100	7206	47307	64316	64316			1	
DHMLIPVSMSELEK	1	Unmodified	1627.795	0.79496453	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	80.868	80.085	2;3	2.919E-07	69264	160511_QHF_FH_JSI12i_2	91.549	78.593			1.0357	1.043	3.7468	4	1	Median	1.1713	1.0253	NaN	1	1	Median	0.81269	1.0072	NaN	1	0	Median	1.1033	1.096	NaN	1	0	Median	0.9722	1.0611	NaN	1	0	Median	253760000	127550000	126210000	45771000	21654000	24117000	48004000	24638000	23366000	102130000	50803000	51325000	57861000	30458000	27403000	7630	603	7207	47308;47309;47310;47311;47312;47313	64317;64318;64319;64320;64321;64322;64323	64317			7	
DHNVEFR	0	Unmodified	915.41988	0.41987898	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.803	11.598	2	0.025622	8975	160511_QHF_FH_JSI11i_2	47.849	28.371			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7631	5074	7208	47314	64324	64324			1	
DHPALNYNIVSGPPSHK	1	Unmodified	1844.9169	0.91694566	272	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	45.18	44.94	4	0.00066766	38450	160511_QHF_FH_JSI12i_3	61.37	50.736			1.2587	1.2666	21.93	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2587	1.2666	21.93	2	2	Median	176980000	83506000	93477000	0	0	0	0	0	0	0	0	0	176980000	83506000	93477000	7632	272	7209	47315;47316	64325;64326	64326			2	
DHPAVAATLNNLAVLYGK	1	Unmodified	1865.9999	0.99994701	2258;4625	Q9H0B6;Q07866	KLC2;KLC1	Kinesin light chain 2;Kinesin light chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	2	3	88.15	87.627	2;3	7.6919E-09	77780	160511_QHF_FH_JSI10i_2	128.9	123.24			0.96907	0.98888	16.042	5	0	Median	0.96907	0.85861	NaN	1	0	Median	0.82233	0.98888	NaN	1	0	Median	0.86835	0.86106	NaN	1	0	Median	1.1223	1.1629	10.798	2	0	Median	236290000	118700000	117590000	36082000	20436000	15647000	56589000	30715000	25874000	50515000	22832000	27683000	93106000	44722000	48384000	7633	4625;2258	7210	47317;47318;47319;47320;47321;47322;47323	64327;64328;64329;64330;64331;64332;64333;64334	64332			8	
DHPESYHSFMWNNFFK	1	Unmodified	2084.8839	0.88393097	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	80.991	73.449	3	6.0516E-06	38438	160513_QHF_FH_JSI12Kac_6	102.28	96.848			1.2834	1.4378	0.66376	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2365	1.431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3321	1.4445	NaN	1	0	Median	77159000	39172000	37986000	0	0	0	55540000	26695000	28845000	0	0	0	21619000	12477000	9141600	7634	1596	7211	47324;47325	64335;64336;64337;64338	64336			4	
DHPFGFVAVPTK	1	Unmodified	1313.6768	0.67682195	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	5.06	6	8	9					4	1	6	7	8	7	63.652	61.042	2;3	3.4502E-06	49925	160511_QHF_FH_JSI9i_3	96.64	92.877			0.96098	0.93946	15.392	27	7	Median	1.1103	0.92052	17.391	6	2	Median	0.84354	1.0189	11.618	7	0	Median	0.96378	0.9542	9.6382	7	2	Median	1.0288	1.1333	15.247	7	3	Median	7824200000	3990000000	3834300000	1543900000	672990000	870900000	2141800000	1137700000	1004100000	2946000000	1576500000	1369500000	1192600000	602720000	589840000	7635	2063	7212	47326;47327;47328;47329;47330;47331;47332;47333;47334;47335;47336;47337;47338;47339;47340;47341;47342;47343;47344;47345;47346;47347;47348;47349;47350;47351;47352;47353	64339;64340;64341;64342;64343;64344;64345;64346;64347;64348;64349;64350;64351;64352;64353;64354;64355;64356;64357;64358;64359;64360;64361;64362;64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378;64379;64380;64381;64382;64383	64356			45	
DHPHTAAYLQELGR	0	Unmodified	1606.7852	0.7852032	3045	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.175	39.979	3	0.0018698	34032	160511_QHF_FH_JSI12i_3	68.034	48.711			0.76714	0.8071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76714	0.8071	NaN	1	1	Median	18231000	10165000	8066700	0	0	0	0	0	0	0	0	0	18231000	10165000	8066700	7636	3045	7213	47354	64384	64384			1	
DHPLPEVAHVK	1	Unmodified	1240.6564	0.65642086	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.33		14	3					5	4	6	5	10	5	30.517	26.383	2;3	2.4696E-05	22924	160511_QHF_FH_JSI10i_2	105.4	93.549			0.83966	0.89513	54.033	23	8	Median	0.95049	0.79803	61.321	6	1	Median	0.57989	0.70719	32.966	5	2	Median	0.8901	0.89513	79.517	7	4	Median	0.85802	0.92893	13.327	5	1	Median	4783400000	2777000000	2006400000	898300000	388910000	509390000	762790000	369100000	393690000	2145200000	1501800000	643380000	977150000	517190000	459960000	7637	1026	7214	47355;47356;47357;47358;47359;47360;47361;47362;47363;47364;47365;47366;47367;47368;47369;47370;47371;47372;47373;47374;47375;47376;47377;47378;47379;47380	64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397;64398;64399;64400;64401;64402;64403;64404;64405;64406;64407;64408;64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419	64412			35	
DHPLPEVAHVKHLSASQK	2	Acetyl (K)	2034.0647	0.064672527	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	51.362	42.025	3;4	1.1339E-05	22773	160513_QHF_FH_JSI11Kac_6	85.927	76.643			0.82199	0.83804	53.831	8	0	Median	0.88374	0.74417	14.125	2	0	Median	1.1725	1.3841	10.072	2	0	Median	0.36335	0.34738	9.4734	2	0	Median	0.82199	0.88083	4.3664	2	0	Median	263550000	153120000	110440000	28455000	16093000	12362000	77722000	35657000	42065000	111480000	76396000	35086000	45894000	24969000	20925000	7638	1026	7215	47381;47382;47383;47384;47385;47386;47387;47388	64420;64421;64422;64423;64424;64425;64426;64427;64428;64429;64430	64420	848		11	
DHPQQQPGMLSR	0	Unmodified	1392.6568	0.65683157	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							3	1	3	3	17.298	16.776	2;3	3.7316E-05	13575	160511_QHF_FH_JSI11i_2	104.05	87.85			1.0485	1.0922	17.104	8	1	Median	1.2831	1.0788	NaN	1	0	Median	1.2809	1.5887	NaN	1	1	Median	0.97039	0.97947	12.963	3	0	Median	0.99517	1.1155	1.7226	3	0	Plateau	528710000	246470000	282240000	72946000	30390000	42556000	29617000	12078000	17539000	250400000	113890000	136510000	175750000	90114000	85632000	7639	3763	7216	47389;47390;47391;47392;47393;47394;47395;47396;47397;47398	64431;64432;64433;64434;64435;64436;64437;64438;64439;64440;64441;64442	64441			11	
DHQEVETEGPESADTGDK	1	Unmodified	1942.8028	0.80282292	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	17.456	16.965	2;3	6.0981E-25	14505	160511_QHF_FH_JSI12i_1	143.98	138			1.0517	1.0152	9.9954	3	3	Median	1.0585	0.85936	NaN	1	1	Median	0.90786	1.0278	NaN	1	1	Median	1.0517	1.0152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61042000	31228000	29813000	18551000	10799000	7752600	23053000	9076700	13976000	19438000	11353000	8084700	0	0	0	7640	3660	7217	47399;47400;47401;47402;47403;47404	64443;64444;64445;64446;64447;64448;64449	64444			7	
DHQEVETEGPESADTGDKSESPDEANVGK	2	Unmodified	3056.2967	0.29665471	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	28.981	28.418	4	2.3669E-06	25442	160511_QHF_FH_JSI12i_1	55.153	49.312			0.99022	1.0117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99022	1.0117	NaN	1	1	Median	25750000	18256000	7494100	0	0	0	0	0	0	0	0	0	25750000	18256000	7494100	7641	3660	7218	47405	64450	64450			1	
DHQNGSMAAVNGHTNSFSPLENNVK	1	Unmodified	2667.2096	0.20957522	5132	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	47.392	47.151	4	0.019595	40300	160511_QHF_FH_JSI12i_3	24.096	21.172			0.85105	0.9275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85105	0.9275	NaN	1	0	Median	70914000	38654000	32261000	0	0	0	0	0	0	0	0	0	70914000	38654000	32261000	7642	5132	7219	47406	64451	64451			1	
DHQTITIQEMPEK	1	Unmodified	1568.7505	0.75045718	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	3.78	9	9					2			5	5	5	5	41.644	39.899	2;3	3.3564E-22	36335	160511_QHF_FH_JSI12i_1	176.42	158.56			0.86521	0.84168	28.841	20	7	Median	0.94294	0.79899	27.673	5	2	Median	0.68517	0.84643	18.203	5	2	Median	0.72122	0.76826	25.683	5	2	Median	1.1132	1.1864	16.783	5	1	Median	2429300000	1231700000	1197500000	400880000	190400000	210480000	585770000	311530000	274240000	853900000	469940000	383960000	588720000	259880000	328830000	7643	1254	7220	47407;47408;47409;47410;47411;47412;47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425;47426	64452;64453;64454;64455;64456;64457;64458;64459;64460;64461;64462;64463;64464;64465;64466;64467;64468;64469;64470;64471;64472;64473;64474;64475;64476;64477	64458			25	
DHQVLIK	1	Unmodified	851.4865	0.48650199	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	15.38	14.865	2;3	0.02555	11876	160511_QHF_FH_JSI11i_2	54.525	19.42			0.93519	1.1653	16.049	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.6189	0.75665	NaN	1	0	Median	1.0182	1.0087	9.2319	2	0	Median	0.93474	1.0488	NaN	1	0	Median	454300000	232470000	221820000	0	0	0	83550000	53870000	29680000	260990000	130150000	130840000	109750000	48450000	61304000	7644	2266	7221	47427;47428;47429;47430	64478;64479;64480;64481;64482;64483	64480			6	
DHQYQFLEDAVR	0	Unmodified	1519.7056	0.7055559	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	2	4	2	58.436	57.553	2;3	7.2045E-16	49833	160511_QHF_FH_JSI11i_2	159.83	152.94			0.97124	1.0501	12.788	9	1	Median	1.3809	1.1962	8.4335	2	0	Median	0.95349	1.1681	6.8989	2	0	Median	0.97124	1.0056	10.893	3	1	Median	0.9053	1.0082	5.7659	2	0	Median	2011400000	1046500000	964960000	318920000	128050000	190880000	441480000	246670000	194820000	689960000	360430000	329530000	561070000	311340000	249730000	7645	2380	7222	47431;47432;47433;47434;47435;47436;47437;47438;47439;47440	64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499;64500	64493			17	
DHRDNLEFFLAGIGR	0	Unmodified	1758.8802	0.88016622	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			81.66	76.067	3	0.00038464	41986	160513_QHF_FH_JSI10Kac_6	76.548	58.631			1.014	1.2056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.014	1.2056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77951000	35156000	42796000	0	0	0	77951000	35156000	42796000	0	0	0	0	0	0	7646	1650	7223	47441	64501	64501			1	
DHSVAESLNYVASWNMSMLQTQDLVK	1	Unmodified	2965.395	0.39499273	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	95.725	86.283	3	7.259E-32	46873	160513_QHF_FH_JSI12Kac_6	156.2	149.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7647	2340	7224	47442	64502	64502			1	
DHSYVIAGYYQANER	0	Unmodified	1784.8118	0.81181188	330	O43402	EMC8	ER membrane protein complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	54.563	45.295	2;3	7.6741E-17	24015	160513_QHF_FH_JSI9Kac_6	136.33	131.19			1.2574	1.2937	23.524	7	2	Median	1.7606	1.4765	18.688	2	1	Median	1.0514	1.2508	25.195	2	0	Median	1.1762	1.149	39.649	2	1	Median	1.051	1.1453	NaN	1	0	Median	156860000	68830000	88031000	49659000	20293000	29366000	46650000	19131000	27519000	52202000	26250000	25952000	8350300	3156300	5194000	7648	330	7225	47443;47444;47445;47446;47447;47448;47449;47450	64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515	64506			13	
DHTLEDEDVIQIVK	1	Unmodified	1652.8257	0.82573061	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		66.829	66.405	3	0.015555	60368	160511_QHF_FH_JSI11i_1	41.227	27.51			1.1142	1.0714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1142	1.0714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47910000	20742000	27168000	0	0	0	0	0	0	47910000	20742000	27168000	0	0	0	7649	5505	7226	47451	64516	64516			1	
DHTLEDEDVIQIVKK	2	Unmodified	1780.9207	0.92069363	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	59.34	59.078	4	0.023626	50828	160511_QHF_FH_JSI12i_3	28.283	22.388			1.7172	1.7697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7172	1.7697	NaN	1	0	Median	25578000	11991000	13588000	0	0	0	0	0	0	0	0	0	25578000	11991000	13588000	7650	5505	7227	47452	64517	64517			1	
DHTLVQTIAR	0	Unmodified	1152.6251	0.62512073	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		33.23	32.83	2	0.0034317	27931	160511_QHF_FH_JSI11i_2	83.998	51.388			0.28988	0.28342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28988	0.28342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49345000	34872000	14473000	0	0	0	0	0	0	49345000	34872000	14473000	0	0	0	7651	2561	7228	47453	64518	64518			1	
DHTNAQFK	1	Unmodified	959.44609	0.44609374	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	7.2486	5.388	2	0.0007734	4155	160511_QHF_FH_JSI11i_2	98.418	80.57			0.89469	0.93097	7.7875	5	0	Median	1.0972	0.94356	NaN	1	0	Median	0.76226	0.93097	NaN	1	0	Median	0.94702	0.9427	9.6129	2	0	Median	0.73639	0.82008	NaN	1	0	Median	372360000	181520000	190840000	79898000	39690000	40209000	85949000	48572000	37377000	118700000	47532000	71171000	87808000	45728000	42079000	7652	534	7229	47454;47455;47456;47457;47458	64519;64520;64521;64522	64522			4	
DHTQVVSLK	1	Unmodified	1025.5506	0.55055881	4061	Q96EX1	SMIM12	Small integral membrane protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			21.445	20.543	2	0.020107	17685	160511_QHF_FH_JSI10i_2	48.794	23.871			1.3479	1.3413	9.246	2	1	Median	1.7386	1.4319	NaN	1	1	Median	1.045	1.2564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51599000	23042000	28557000	26037000	9119600	16917000	25562000	13922000	11640000	0	0	0	0	0	0	7653	4061	7230	47459;47460	64523;64524	64524			2	
DHTTLLSEVMTPR	0	Unmodified	1498.745	0.74497787	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		7								1	1	3	2	66.816	65.984	2;3	0.00078432	57562	160511_QHF_FH_JSI11i_2	80.014	68.85			0.9879	1.0841	14.748	5	1	Median	1.2563	1.0841	NaN	1	0	Median	0.9796	1.186	NaN	1	0	Median	0.94354	0.95974	23.427	2	1	Median	0.9879	1.0625	NaN	1	0	Median	253060000	117090000	135970000	43179000	13714000	29465000	62824000	30712000	32112000	103500000	50881000	52618000	43562000	21784000	21778000	7654	1182	7231	47461;47462;47463;47464;47465;47466;47467	64525;64526;64527;64528;64529	64527			3	
DHVFLCEGEEPK	1	Unmodified	1458.6449	0.64492948	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	36.758	36.061	2;3	0.00024588	31662	160511_QHF_FH_JSI10i_2	77.662	67.658			2.2838	2.783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2838	2.783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38978000	6977800	32000000	0	0	0	26973000	6977800	19996000	12004000	0	12004000	0	0	0	7655	4795	7232	47468;47469;47470;47471	64530;64531;64532;64533	64533			4	
DHVVSDFSEHGSLK	1	Unmodified	1555.7267	0.72668527	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	1	4	33.132	32.032	2;3	1.7911E-07	26920	160511_QHF_FH_JSI11i_2	140.39	116.05			0.97595	1.0879	90.391	7	5	Median	0.72243	0.62542	NaN	1	1	Median	0.42889	0.50551	NaN	1	1	Median	1.2017	1.1951	NaN	1	0	Median	1.3039	1.4558	107.12	4	3	Median	295210000	107470000	187730000	14120000	9236100	4883900	16199000	10271000	5927900	32254000	12848000	19406000	232640000	75120000	157520000	7656	1837	7233	47472;47473;47474;47475;47476;47477;47478;47479	64534;64535;64536;64537;64538;64539;64540;64541;64542	64540			9	
DHVYLQLHHLPPEQLATR	0	Unmodified	2166.1334	0.13342079	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	57.979	57.721	3;4	0.0003548	50206	160511_QHF_FH_JSI12i_3	54.427	44.263			3.2448	3.3154	34.814	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2448	3.3154	34.814	2	1	Median	98727000	31351000	67376000	0	0	0	0	0	0	0	0	0	98727000	31351000	67376000	7657	1367	7234	47480;47481	64543;64544	64543			2	
DIAAHIK	1	Unmodified	766.43374	0.43373813	2054	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	1	2	3	3	19.389	17.112	2	0.0057781	14671	160511_QHF_FH_JSI10i_2	97.071	44.388			2.803	2.3496	83.379	9	9	Median	2.803	2.3496	NaN	1	1	Median	2.4709	2.9954	51.342	2	2	Median	3.9136	3.9038	92.453	3	3	Median	1.7725	1.9644	117.72	3	3	Median	2350500000	1023300000	1327200000	382100000	217860000	164240000	367360000	99836000	267520000	894970000	298180000	596790000	706060000	407400000	298660000	7658	2054	7235	47482;47483;47484;47485;47486;47487;47488;47489;47490	64545;64546;64547;64548;64549;64550;64551;64552;64553	64551			9	
DIAAHIKK	2	Unmodified	894.5287	0.52870115	2054	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.68	0.465		6	13							6	7	4	2	13.618	13.068	2;3	0.001893	10238	160511_QHF_FH_JSI9i_3	114.6	67.535			1.7432	1.7937	126.99	19	19	Median	1.7547	1.5153	136.17	6	6	Median	1.1425	1.3992	98.165	7	7	Median	1.9953	1.9534	108.86	4	4	Median	1.1367	1.1564	319.17	2	2	Median	9376200000	3725300000	5651000000	1598700000	624060000	974630000	2718200000	1104000000	1614200000	2285600000	1015200000	1270400000	2773800000	982020000	1791700000	7659	2054	7236	47491;47492;47493;47494;47495;47496;47497;47498;47499;47500;47501;47502;47503;47504;47505;47506;47507;47508;47509	64554;64555;64556;64557;64558;64559;64560;64561;64562;64563;64564;64565;64566;64567;64568;64569;64570;64571;64572	64561			19	
DIAAHIKK	2	Acetyl (K)	936.53927	0.53926584	2054	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		15.3	0.471								2	1			3		34.463	24.833	2;3	0.001181	14763	160513_QHF_FH_JSI11Kac_5	98.299	55.701			4.6088	4.5296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6088	4.5296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16028000	12303000	3724300	0	0	0	0	0	0	16028000	12303000	3724300	0	0	0	7660	2054	7236	47510;47511;47512	64573;64574;64575	64575	2119		3	
DIAANEENRK	1	Unmodified	1158.5629	0.56291441	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			8.9252	8.4505	2	0.0087081	6442	160511_QHF_FH_JSI10i_2	64.841	40.686			1.1651	1.4157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1651	1.4157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18622000	8689200	9933200	0	0	0	18622000	8689200	9933200	0	0	0	0	0	0	7661	511	7237	47513	64576	64576			1	
DIAAYIK	1	Unmodified	792.43815	0.43815481	4072	Q96FJ2	DYNLL2	Dynein light chain 2, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	1	2	54.748	53.882	2	0.0084674	46078	160511_QHF_FH_JSI12i_2	86.086	50.981			0.40811	0.44427	152.51	6	5	Median	0.71806	0.58252	237.73	2	2	Median	0.28255	0.34218	NaN	1	1	Median	0.58948	0.57681	NaN	1	1	Median	0.46671	0.49502	240.15	2	1	Median	367420000	233460000	133950000	94442000	54783000	39659000	80606000	58927000	21679000	84202000	55132000	29069000	108170000	64621000	43547000	7662	4072	7238	47514;47515;47516;47517;47518;47519	64577;64578;64579;64580;64581;64582	64578			6	
DIAAYIKK	2	Acetyl (K)	962.54368	0.54368251	4072	Q96FJ2	DYNLL2	Dynein light chain 2, cytoplasmic	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	70.498	59.838	2	0.01089	32472	160513_QHF_FH_JSI12Kac_4	75.854	38.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7663	4072	7239	47520	64583	64583	3041		1	
DIAGEFK	1	Unmodified	778.38612	0.38611924	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	36.468	35.864	2	0.025567	32450	160511_QHF_FH_JSI12i_1	57.281	7.9225			1.3643	1.599	104.48	5	5	Median	0.29938	0.24442	NaN	1	1	Median	1.3643	1.599	NaN	1	1	Median	1.8693	1.8042	NaN	1	1	Median	0.85741	0.87861	136.13	2	2	Median	655660000	360920000	294740000	103020000	71343000	31682000	159560000	87175000	72381000	158730000	76310000	82420000	234350000	126100000	108250000	7664	3036	7240	47521;47522;47523;47524;47525	64584;64585;64586;64587;64588	64586			5	
DIAIAQR	0	Unmodified	785.43955	0.43955179	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	25.238	24.59	2	0.0093675	21690	160511_QHF_FH_JSI12i_1	79.454	12.419			1.0719	1.1331	27.148	3	0	Median	0.91093	0.73249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2409	1.2053	NaN	1	0	Median	1.0719	1.1331	NaN	1	0	Median	1072300000	557180000	515120000	259370000	134590000	124780000	0	0	0	377390000	196080000	181300000	435540000	226500000	209040000	7665	5753	7241	47526;47527;47528	64589;64590;64591	64590			3	
DIALSLPQLPR	0	Unmodified	1221.7081	0.70812208	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	89.517	89.296	2	0.00057257	81326	160511_QHF_FH_JSI11i_1	70.028	13.465			0.71502	0.74362	34.115	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52535	0.58423	NaN	1	1	Median	0.97318	0.94649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34686000	20396000	14289000	0	0	0	19892000	13528000	6363400	14794000	6868000	7926000	0	0	0	7666	5138	7242	47529;47530;47531;47532	64592;64593;64594;64595;64596	64592			5	
DIALVNLANVLHR	0	Unmodified	1446.8307	0.83069683	3967	Q96AE7	TTC17	Tetratricopeptide repeat protein 17	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	95.481	95.435	3	2.448E-05	85097	160511_QHF_FH_JSI11i_3	95.417	80.031			1.0839	1.0944	128.26	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1365	1.0944	154.66	2	2	Median	0.99837	1.086	159.47	2	2	Median	30637000	17733000	12904000	0	0	0	2420900	2420900	0	10783000	5891600	4891200	17433000	9420100	8012900	7667	3967	7243	47533;47534;47535;47536;47537	64597;64598;64599;64600;64601	64598			5	
DIANQEK	1	Unmodified	816.39775	0.39774656	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1	0	3									1		1	1	7.6752	7.2907	2	0.056414	5181	160511_QHF_FH_JSI12i_1	41.652	1.3841			0.72268	0.71463	8.8038	3	0	Plateau	1.0176	0.83695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72268	0.71463	NaN	1	0	Median	0.67453	0.72304	NaN	1	0	Median	1193400000	620000000	573380000	372270000	190250000	182020000	0	0	0	446690000	214210000	232480000	374420000	215540000	158880000	7668	3915	7244	47538;47539;47540	64602	64602			1	
DIAQFEQDGILR	0	Unmodified	1403.7045	0.70449327	4648	Q9H0X9	OSBPL5	Oxysterol-binding protein-related protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.113	75.568	2	0.026446	68862	160511_QHF_FH_JSI12i_1	42.21	28.441			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7669	4648	7245	47541	64603	64603			1	
DIAQQLQATCTSLGSSIQGLPTNVK	1	Unmodified	2629.3381	0.33812978	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	98.215	98.033	3	2.6513E-09	88923	160511_QHF_FH_JSI10i_1	78.758	72.094			0.79333	0.95606	17.736	4	0	Linear	1.2584	1.0443	NaN	1	0	Median	0.7466	0.87528	NaN	1	0	Median	0.88101	0.86586	NaN	1	0	Median	1.1774	1.2616	NaN	1	0	Median	431590000	201650000	229940000	45664000	19910000	25754000	159370000	76986000	82383000	119030000	65520000	53513000	107520000	39232000	68288000	7670	434	7246	47542;47543;47544;47545	64604;64605;64606;64607;64608;64609;64610;64611;64612;64613;64614	64611			11	
DIATIVADK	1	Unmodified	944.51786	0.51786169	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.09	5					3	1			1	2	2	4	58.099	53.398	2	3.0672E-06	47429	160511_QHF_FH_JSI9i_1	124.23	65.025			0.43993	0.42756	122.51	9	6	Median	0.67215	0.54564	NaN	1	0	Median	0.45394	0.5325	42.487	2	1	Median	0.54443	0.53332	31.258	2	1	Median	0.21327	0.22552	197.72	4	4	Median	1577700000	891440000	686260000	392610000	229590000	163020000	366270000	217100000	149170000	410490000	250830000	159670000	408330000	193920000	214410000	7671	5569	7247	47546;47547;47548;47549;47550;47551;47552;47553;47554	64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625;64626	64623			12	
DIAVLFTK	1	Unmodified	905.52222	0.52221879	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.06	6.43	1	7					2	8		4	6	5	3	80.559	74.699	2	0.0031048	68404	160511_QHF_FH_JSI11i_2	81.548	0			0.15941	0.14821	231.6	7	7	Median	1.2609	1.0911	297.46	2	2	Median	0.77777	0.89776	332.65	2	2	Median	1.0133	0.99672	269.53	2	2	Median	0.086173	0.089342	NaN	1	1	Median	74556000	44849000	29707000	13099000	7724500	5374400	23419000	16021000	7398000	29819000	14056000	15763000	8218900	7046900	1172000	7672	2279	7248	47555;47556;47557;47558;47559;47560;47561;47562;47563;47564;47565;47566;47567;47568;47569;47570;47571;47572	64627;64628;64629;64630;64631;64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642;64643;64644	64636			18	
DIAWTEDSK	1	Unmodified	1063.4822	0.48220447	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				1	3	4	2	42.426	38.409	2	1.4654E-05	34791	160511_QHF_FH_JSI11i_1	123.16	82.887			0.53688	0.58331	141.78	10	9	Median	1.0886	0.88783	NaN	1	1	Median	0.57717	0.65121	122.9	3	3	Median	0.97304	0.93203	208.98	4	3	Median	0.40519	0.43453	26.067	2	2	Median	1258400000	604880000	653560000	132050000	68498000	63551000	433920000	225100000	208820000	450160000	165930000	284230000	242320000	145350000	96963000	7673	472	7249	47573;47574;47575;47576;47577;47578;47579;47580;47581;47582	64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656	64647			12	
DICNDVLSLLEK	1	Unmodified	1417.7123	0.71228076	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.84	101.74	2	1.515E-22	92313	160511_QHF_FH_JSI12i_1	192.3	123.56			0.82644	0.84379	14.765	4	1	Median	1.0097	0.82714	NaN	1	1	Median	0.718	0.86077	NaN	1	0	Median	0.72477	0.70375	NaN	1	0	Median	0.94238	1.0082	NaN	1	0	Median	1007900000	585300000	422570000	92284000	42637000	49647000	293540000	160150000	133400000	359250000	210700000	148550000	262790000	171810000	90981000	7674	2051	7250	47583;47584;47585;47586	64657;64658;64659;64660;64661;64662;64663	64659			7	
DIDAFWLQR	0	Unmodified	1162.5771	0.57710791	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	86.385	85.768	2	1.851E-05	75169	160511_QHF_FH_JSI11i_2	107.66	83.51			1.1119	1.1922	26.502	5	0	Median	0.89088	0.74828	NaN	1	0	Median	0.63539	0.77457	NaN	1	0	Median	1.2385	1.246	6.2341	2	0	Median	1.1119	1.1961	NaN	1	0	Median	136800000	71249000	65554000	22677000	12432000	10245000	27006000	15915000	11091000	55135000	27106000	28029000	31986000	15795000	16191000	7675	552	7251	47587;47588;47589;47590;47591;47592	64664;64665;64666;64667;64668;64669	64667			4	
DIDENAYAK	1	Unmodified	1037.4666	0.46655441	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.71	5.82	3				1	3					2	1	4	28.111	23.257	2	7.2097E-06	20868	160511_QHF_FH_JSI10i_1	131.06	111.28			1.7811	1.8913	123.18	7	7	Median	NaN	NaN	NaN	0	0	Median	0.5096	0.58882	165.02	2	2	Median	1.7811	1.7101	NaN	1	1	Median	2.1832	2.3475	122.6	4	4	Median	949110000	474990000	474120000	0	0	0	346740000	188940000	157800000	308430000	158470000	149960000	293940000	127580000	166360000	7676	2370	7252	47593;47594;47595;47596;47597;47598;47599	64670;64671;64672;64673;64674;64675;64676	64672			7	
DIDEVSSLLR	0	Unmodified	1145.5928	0.59281755	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								3	2	2	3	78.656	78.176	2	9.6051E-07	71087	160511_QHF_FH_JSI11i_1	134.26	81.093			0.32538	0.29187	142.6	9	9	Median	1.0033	0.82953	158.44	2	2	Median	0.65512	0.77994	240.79	2	2	Median	0.64284	0.62297	171.92	2	2	Median	0.28753	0.29187	154.89	3	3	Median	1768100000	1011800000	756300000	350240000	168990000	181250000	472230000	298200000	174020000	557060000	314500000	242570000	388550000	230090000	158460000	7677	1721	7253	47600;47601;47602;47603;47604;47605;47606;47607;47608;47609	64677;64678;64679;64680;64681;64682;64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694;64695;64696	64679			20	
DIDHETVVEEQIIGENSPPDYSEYMTGK	1	Unmodified	3194.4238	0.42376948	1261	P25490	YY1	Transcriptional repressor protein YY1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.563	86.077	3	0.031204	78415	160511_QHF_FH_JSI12i_1	20.85	18.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4043300	4043300	0	0	0	0	0	0	0	0	0	0	4043300	4043300	0	7678	1261	7254	47610	64697	64697			1	
DIDIHEVR	0	Unmodified	995.50361	0.50360861	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.28	5.72	12	13	9				3	8	1	6	14	14	12	33.286	30.435	2;3	0.00024966	26555	160511_QHF_FH_JSI9i_2	116.37	97.64			0.84433	0.83401	80.131	43	28	Median	0.89675	0.74689	35.143	6	0	Median	0.99945	1.1966	90.566	13	10	Median	0.75393	0.74684	92.414	13	9	Median	0.84197	0.93311	74.147	11	9	Median	13093000000	6517300000	6575200000	1578900000	765210000	813670000	2619900000	1402300000	1217600000	5013700000	2469000000	2544700000	3880000000	1880700000	1999200000	7679	2161	7255	47611;47612;47613;47614;47615;47616;47617;47618;47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639;47640;47641;47642;47643;47644;47645;47646;47647;47648;47649;47650;47651;47652;47653;47654;47655;47656	64698;64699;64700;64701;64702;64703;64704;64705;64706;64707;64708;64709;64710;64711;64712;64713;64714;64715;64716;64717;64718;64719;64720;64721;64722;64723;64724;64725;64726;64727;64728;64729;64730;64731;64732;64733;64734;64735;64736;64737;64738;64739;64740;64741;64742;64743;64744;64745;64746;64747;64748;64749;64750;64751;64752;64753;64754;64755	64736			57	
DIDILIVR	0	Unmodified	955.57023	0.57023162	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.4	6.86	2							3			2	1	2	83.246	76.218	2	0.01776	74618	160511_QHF_FH_JSI12i_1	46.426	26.144			0.47024	0.51491	37.05	3	3	Median	NaN	NaN	NaN	0	0	Median	0.23861	0.27202	NaN	1	1	Median	0.55896	0.51861	NaN	1	1	Median	0.47024	0.51491	NaN	1	1	Median	16028000	12931000	3097000	0	0	0	13800000	11528000	2271900	1308100	822300	485800	920280	580960	339320	7680	1738	7256	47657;47658;47659;47660;47661	64756;64757;64758;64759;64760;64761	64756			6	
DIDILNSAGK	1	Unmodified	1044.5451	0.54513908	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7	6	2					2				1	1		2	62.577	57.454	2	1.5567E-05	51113	160511_QHF_FH_JSI9i_1	151.44	52.445			0.27344	0.30271	113.34	4	3	Median	0.20176	0.16441	NaN	1	1	Median	0.36389	0.4047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63976	0.68967	157.51	2	1	Median	178610000	86493000	92118000	81387000	58226000	23160000	1187300	859080	328190	0	0	0	96037000	27408000	68629000	7681	403	7257	47662;47663;47664;47665	64762;64763;64764;64765	64763			4	
DIDILNSAGKMDK	2	Acetyl (K)	1460.7181	0.71809442	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	79.264	70.944	2	0.031015	35130	160513_QHF_FH_JSI12Kac_3	45.973	29.748			1.5449	1.6625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5449	1.6625	NaN	1	0	Median	6444900	2683000	3761900	0	0	0	0	0	0	0	0	0	6444900	2683000	3761900	7682	403	7258	47666	64766	64766	206		1	
DIDILNSAGKMDK	2	Acetyl (K);Oxidation (M)	1476.713	0.71300904	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	1	0	1	1		By MS/MS		By MS/MS	12.8	0.4					1	4					2		3	71.843	62.816	2	4.6985E-06	31752	160513_QHF_FH_JSI12Kac_3	113.63	65.691			8.2423	8.7783	15.345	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.2423	8.7783	15.345	2	2	Median	17141000	6297700	10843000	0	0	0	4603400	2576900	2026500	0	0	0	12537000	3720800	8816600	7683	403	7258	47667;47668;47669;47670;47671	64767;64768;64769;64770;64771	64767	206	162	5	
DIDISSPEFK	1	Unmodified	1149.5554	0.55536941	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	1	3	63.036	59.88	2	1.9649E-09	54293	160511_QHF_FH_JSI11i_1	131.44	91.395			0.72442	0.8856	60.078	7	4	Median	1.1725	0.97171	83.673	2	2	Median	0.72442	0.8856	NaN	1	0	Median	0.90996	0.89531	NaN	1	0	Median	0.39853	0.42063	84.377	3	2	Plateau	1034200000	530740000	503470000	320850000	135750000	185110000	278190000	163380000	114800000	224340000	109580000	114760000	210840000	122030000	88804000	7684	2286	7259	47672;47673;47674;47675;47676;47677;47678	64772;64773;64774;64775;64776;64777;64778;64779;64780	64773			9	
DIDLLAK	1	Unmodified	786.44872	0.4487195	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.905	56.246	2	0.040857	51051	160511_QHF_FH_JSI12i_1	49.358	14.466			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10205000	10205000	0	0	0	0	0	0	0	0	0	0	10205000	10205000	0	7685	3318	7260	47679	64781	64781			1	
DIDNLVQR	0	Unmodified	971.50361	0.50360861	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	42.463	41.72	2	0.00052906	37715	160511_QHF_FH_JSI11i_1	105.25	65.586			0.63788	0.62615	80.859	6	4	Median	1.2891	1.0593	103.93	2	2	Median	0.51981	0.61069	NaN	1	0	Median	0.6605	0.64202	NaN	1	0	Median	0.93799	0.9898	136.4	2	2	Median	1368900000	757310000	611590000	342650000	140680000	201960000	234730000	176630000	58105000	357310000	209780000	147530000	434200000	230220000	203980000	7686	1648	7261	47680;47681;47682;47683;47684;47685;47686	64782;64783;64784;64785;64786;64787;64788;64789	64783			8	
DIDPEGK	1	Unmodified	772.3603	0.36029842	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.668	13.969	2	0.027977	11204	160511_QHF_FH_JSI9i_1	55.676	6.3176			2.6392	2.4445	1.5861	2	2	Median	3.0297	2.4721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.299	2.4172	NaN	1	1	Median	288910000	119760000	169150000	131490000	43009000	88478000	0	0	0	0	0	0	157430000	76755000	80670000	7687	1771	7262	47687;47688	64790;64791	64791			2	
DIDPIITR	0	Unmodified	941.5182	0.51819605	4633	Q9H0H0	INTS2	Integrator complex subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			50.001	49.581	2	0.019499	44667	160511_QHF_FH_JSI10i_1	45.68	14.391			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7688	4633	7263	47689	64792	64792			1	
DIDPQNDLTFLR	0	Unmodified	1445.7151	0.71505795	4891	Q9NP97;Q8TF09	DYNLRB1;DYNLRB2	Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	82.618	82.149	2	1.2804E-20	74610	160511_QHF_FH_JSI10i_1	173.32	89.112			0.95443	1.0374	9.9376	4	2	Median	1.3756	1.1417	NaN	1	1	Median	0.9283	1.1128	NaN	1	1	Median	0.98129	0.96722	NaN	1	0	Median	0.92775	0.93574	NaN	1	0	Median	710030000	429920000	280110000	119280000	57414000	61869000	266070000	187150000	78919000	194800000	109540000	85259000	129870000	75811000	54061000	7689	4891	7264	47690;47691;47692;47693;47694	64793;64794;64795;64796;64797;64798;64799;64800	64798			8	
DIDSFVPSK	1	Unmodified	1006.4971	0.49712625	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	2	3	57.865	55.249	2	1.8708E-05	49880	160511_QHF_FH_JSI10i_1	107.57	77.389			0.98413	1.1413	56.198	9	7	Median	1.1765	0.96719	64.433	2	2	Median	1.1531	1.3472	23.451	2	0	Median	0.91999	0.89941	81.419	2	2	Median	0.53504	0.553	73.178	3	3	Median	1186500000	596950000	589560000	339430000	158470000	180970000	209070000	121910000	87157000	345470000	172820000	172640000	292550000	143750000	148800000	7690	970	7265	47695;47696;47697;47698;47699;47700;47701;47702;47703	64801;64802;64803;64804;64805;64806;64807;64808;64809;64810;64811;64812	64807			12	
DIEAMDPSILK	1	Unmodified	1230.6166	0.61658946	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	2	2	2	72.791	72.297	2	7.7993E-06	65776	160511_QHF_FH_JSI12i_1	112.71	75.235			0.69794	0.7615	99.781	6	6	Median	2.9149	2.3774	NaN	1	1	Median	0.32348	0.37465	NaN	1	1	Median	0.75448	0.73026	136.69	2	2	Median	0.67796	0.69262	113.71	2	2	Median	594570000	320270000	274300000	83866000	26386000	57480000	100660000	67825000	32836000	222580000	114180000	108400000	187460000	111880000	75581000	7691	1586	7266	47704;47705;47706;47707;47708;47709;47710	64813;64814;64815;64816;64817;64818;64819	64815			7	
DIEAQTQKPEPPESAEK	2	Unmodified	1895.9113	0.91125116	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	1	By matching		By MS/MS		1	0	2									1		1		29.622	28.876	3	0.00021162	25819	160511_QHF_FH_JSI11i_1	63.337	31.51			0.66877	0.59913	21.486	2	0	Median	0.83982	0.69744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53256	0.51469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122840000	78794000	44051000	45568000	27129000	18438000	0	0	0	77277000	51664000	25612000	0	0	0	7692	3083	7267	47711;47712	64820	64820			1	
DIEDVFYK	1	Unmodified	1027.4862	0.48622722	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.17	9					4	3			3	4	3	6	66.211	61.193	1;2	0.00018722	59162	160511_QHF_FH_JSI11i_1	135.84	114.07			0.67835	0.65096	84.292	16	15	Median	1.2987	0.45574	106.79	3	2	Median	1.2172	1.4374	90.551	4	4	Median	0.40261	0.38057	99.419	3	3	Median	0.59708	0.64249	68.889	6	6	Median	4026600000	2033600000	1993000000	926850000	430350000	496500000	1138400000	439860000	698550000	1319900000	739850000	580000000	641530000	423540000	217990000	7693	2260	7268	47713;47714;47715;47716;47717;47718;47719;47720;47721;47722;47723;47724;47725;47726;47727;47728	64821;64822;64823;64824;64825;64826;64827;64828;64829;64830;64831;64832;64833;64834;64835;64836;64837;64838;64839;64840;64841;64842;64843;64844;64845	64823			25	
DIEEHLQR	0	Unmodified	1038.5094	0.50942227	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		4								1	2	1		19.831	19.14	2;3	1.0749E-06	16418	160511_QHF_FH_JSI10i_2	150.17	65.921			0.91105	1.1368	30.528	4	1	Median	0.79354	0.68166	NaN	1	0	Median	0.91105	1.1368	0.68096	2	1	Median	1.3703	1.394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	424310000	201770000	222540000	86461000	39291000	47170000	197420000	110850000	86573000	140430000	51630000	88802000	0	0	0	7694	5434	7269	47729;47730;47731;47732	64846;64847;64848	64847			3	
DIEEIIDELK	1	Unmodified	1215.6234	0.62344898	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	101.7	101.59	2	1.1389E-05	92063	160511_QHF_FH_JSI12i_1	103.7	59.351			0.54043	0.59734	58.095	2	0	Median	NaN	NaN	NaN	0	0	Median	0.3416	0.39611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85499	0.90079	NaN	1	0	Median	227460000	145150000	82314000	20437000	10486000	9951500	102500000	82960000	19541000	0	0	0	104520000	51703000	52821000	7695	1158	7270	47733;47734;47735	64849;64850	64849			2	
DIEEVSQGLLSLLGANR	0	Unmodified	1812.9581	0.95814177	3604	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	2	2	102.91	102.83	3	5.0133E-11	88708	160511_QHF_FH_JSI12i_2	112.03	95.633			1.1714	1.2369	83.585	5	4	Median	NaN	NaN	NaN	0	0	Median	0.58759	0.72983	NaN	1	0	Median	0.89417	0.89787	132.1	2	2	Median	1.7191	1.8203	54.646	2	2	Median	107040000	47393000	59651000	0	0	0	24344000	15296000	9048000	42946000	21929000	21017000	39754000	10168000	29586000	7696	3604	7271	47736;47737;47738;47739;47740	64851;64852;64853;64854;64855	64851			5	
DIEGKLPQTEQELK	2	Unmodified	1626.8465	0.84646606	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	47.474	46.815	2	0.0061934	42558	160511_QHF_FH_JSI12i_1	67.153	42.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7697	4989	7272	47741;47742	64856;64857	64857			2	
DIELQIR	0	Unmodified	885.49198	0.4919813	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	52.892	52.227	2	0.0057781	47468	160511_QHF_FH_JSI12i_1	97.071	24.032			0.69713	0.71093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69713	0.71093	NaN	1	1	Median	32214000	18953000	13262000	0	0	0	0	0	0	0	0	0	32214000	18953000	13262000	7698	133	7273	47743;47744	64858;64859	64858			2	
DIELSPEAQAK	1	Unmodified	1199.6034	0.60338224	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	41.801	41.249	2	2.3164E-06	37429	160511_QHF_FH_JSI12i_1	121.73	88.84			1.0645	1.259	63.689	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0645	1.259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78722	0.8138	82.724	2	2	Median	221050000	119360000	101690000	0	0	0	73755000	40470000	33285000	0	0	0	147300000	78893000	68403000	7699	3141	7274	47745;47746;47747	64860;64861;64862	64860			3	
DIELVMSQANVSR	0	Unmodified	1460.7293	0.72932781	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.37	6.07	15	13	2			7	6	6		11	15	11	12	71.242	66.939	2;3	5.7528E-52	59152	160511_QHF_FH_JSI12i_2	193.96	18.812			0.78576	0.78449	232.05	42	41	Median	1.5124	1.3135	234.59	8	8	Median	1.3893	1.5759	245.77	15	15	Median	1.7151	1.5575	219.09	11	10	Median	0.12338	0.13297	235.95	8	8	Median	5508600000	2893400000	2615200000	852010000	208220000	643790000	1752600000	1005800000	746780000	1578800000	813630000	765200000	1325200000	865730000	459470000	7700	87	7275	47748;47749;47750;47751;47752;47753;47754;47755;47756;47757;47758;47759;47760;47761;47762;47763;47764;47765;47766;47767;47768;47769;47770;47771;47772;47773;47774;47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796	64863;64864;64865;64866;64867;64868;64869;64870;64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884;64885;64886;64887;64888;64889;64890;64891;64892;64893;64894;64895;64896;64897;64898;64899;64900;64901;64902;64903;64904;64905;64906;64907;64908;64909;64910;64911;64912;64913;64914;64915;64916;64917;64918;64919	64872			57	
DIELVMSQANVSR	0	Oxidation (M)	1476.7242	0.72424243	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	4.78	4				1	9	6	4		3	9	5	7	58.444	50.259	2	4.9937E-20	26660	160513_QHF_FH_JSI12Kac_3	154.66	125.93			0.9922	1.0757	143.33	20	15	Median	1.2282	1.0331	NaN	1	1	Median	0.87292	1.0409	157.27	8	6	Median	0.97547	0.9297	93.456	5	3	Median	2.0166	2.1144	178.75	6	5	Median	327590000	155090000	172500000	64210000	29945000	34265000	114930000	61509000	53425000	79234000	38562000	40672000	69214000	25074000	44140000	7701	87	7275	47797;47798;47799;47800;47801;47802;47803;47804;47805;47806;47807;47808;47809;47810;47811;47812;47813;47814;47815;47816;47817;47818;47819;47820	64920;64921;64922;64923;64924;64925;64926;64927;64928;64929;64930;64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942;64943;64944;64945;64946	64936		40	27	
DIENQYETQITQIEHEVSSSGQEVQSSAK	1	Unmodified	3263.5066	0.5065879	62	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			93.409	93.028	3	2.9003E-10	82619	160511_QHF_FH_JSI9i_1	72.103	63.708		+	1.1782	1.1114	75.194	2	2	Median	0.80665	0.65305	NaN	1	1	Median	1.7208	1.8914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25580000	18524000	7056400	13463000	11191000	2271700	12117000	7332600	4784700	0	0	0	0	0	0	7702	62	7276	47821;47822	64947;64948;64949	64949			3	
DIENYIQDGK	1	Unmodified	1193.5564	0.55643205	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.022	50.356	2	1.0136E-05	45703	160511_QHF_FH_JSI12i_1	114.97	61.194			1.3525	1.4098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3525	1.4098	NaN	1	1	Median	75438000	22885000	52553000	0	0	0	0	0	0	0	0	0	75438000	22885000	52553000	7703	3896	7277	47823	64950	64950			1	
DIENYIQDGKDDYKK	3	Unmodified	1842.8636	0.86357268	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	47.584	47.344	3	0.0018027	40431	160511_QHF_FH_JSI12i_3	69.261	55.634			2.705	2.7518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.705	2.7518	NaN	1	1	Median	33762000	8825200	24937000	0	0	0	0	0	0	0	0	0	33762000	8825200	24937000	7704	3896	7278	47824	64951	64951			1	
DIEQIAEFLEQSVK	1	Unmodified	1647.8356	0.83556702	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	102.95	102.82	2	5.3868E-08	88720	160511_QHF_FH_JSI12i_2	186.76	153.67			0.46116	0.49238	83.091	4	3	Median	0.29422	0.26301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45334	0.45204	NaN	1	0	Median	0.90628	1.0031	88.551	2	2	Median	200210000	121140000	79073000	36458000	30067000	6390400	8922900	8922900	0	45198000	23583000	21616000	109630000	58565000	51067000	7705	1148	7279	47825;47826;47827;47828;47829	64952;64953;64954;64955;64956	64952			5	
DIEQSIK	1	Unmodified	831.4338	0.43379771	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3					3	3	1	26.576	22.836	2	0.0087617	20280	160511_QHF_FH_JSI10i_1	85.265	13.316			1.0083	1.1195	77.705	7	4	Median	NaN	NaN	NaN	0	0	Median	0.86796	1.0268	47.903	3	2	Median	1.9578	1.9314	125.05	3	2	Median	1.0083	1.1195	NaN	1	0	Median	1175100000	651380000	523690000	0	0	0	581920000	264940000	316980000	578010000	378940000	199070000	15132000	7496000	7635900	7706	932	7280	47830;47831;47832;47833;47834;47835;47836	64957;64958;64959;64960;64961;64962;64963	64960			7	
DIEREDIEFICK	1	Unmodified	1565.7396	0.73955814	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	62.464	61.686	2;3	2.1721E-06	56043	160511_QHF_FH_JSI11i_1	123.02	111.96			1.1825	1.2088	35.014	9	4	Median	1.0049	0.83263	58.06	2	2	Median	1.0103	1.1981	33.759	2	1	Median	0.875	0.87267	9.7907	2	0	Median	1.3929	1.5309	14.377	3	1	Median	872640000	442750000	429880000	57419000	29896000	27523000	275490000	144980000	130510000	270220000	146610000	123610000	269510000	121270000	148240000	7707	1722	7281	47837;47838;47839;47840;47841;47842;47843;47844;47845	64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974	64965			11	
DIETFYNTSIEEMPLNVADLI	0	Unmodified	2426.1563	0.15630881	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.685	5	3	1							1	4	2	2	104.08	103.99	2;3	4.3383E-07	94800	160511_QHF_FH_JSI10i_1	128.68	121.47			1.04	1.1131	19.388	9	3	Median	1.108	0.914	NaN	1	0	Median	0.98694	1.2015	21.754	4	1	Median	1.198	1.1333	2.5479	2	1	Median	0.88864	0.92994	13.35	2	1	Median	268050000	141060000	126990000	22248000	10387000	11862000	150800000	81286000	69510000	41378000	17237000	24141000	53623000	32147000	21477000	7708	1917	7282	47846;47847;47848;47849;47850;47851;47852;47853;47854	64975;64976;64977;64978;64979;64980;64981;64982;64983;64984;64985	64980			11	
DIFAMDDK	1	Unmodified	953.41643	0.41643309	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	54.588	53.838	2	0.014211	47832	160511_QHF_FH_JSI9i_1	60.91	41.274			3.262	2.6642	20.205	3	3	Plateau	3.262	2.6642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7699	2.7115	NaN	1	1	Median	1.7662	1.8947	NaN	1	1	Median	130220000	39247000	90973000	52658000	15033000	37626000	0	0	0	41077000	13064000	28013000	36485000	11150000	25335000	7709	4122	7283	47855;47856;47857	64986;64987;64988	64988			3	
DIFDQLAK	1	Unmodified	948.49165	0.49164694	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	66.886	64.273	2	0.0012624	58595	160511_QHF_FH_JSI12i_1	101.64	50.677			1.0556	1.0845	8.1045	5	0	Median	1.3001	1.0845	NaN	1	0	Median	0.99926	1.165	NaN	1	0	Median	1.0556	1.011	NaN	1	0	Median	1.0766	1.1485	11.108	2	0	Median	1198700000	598590000	600080000	331370000	159690000	171680000	244400000	127830000	116570000	310200000	159250000	150950000	312690000	151820000	160880000	7710	1254	7284	47858;47859;47860;47861;47862	64989;64990;64991;64992;64993;64994;64995	64990			7	
DIFGASDPYVK	1	Unmodified	1210.587	0.58700389	4199	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	64	63.223	2	0.0076344	56325	160511_QHF_FH_JSI9i_1	60.518	37.778			1.21	1.0906	104.8	4	4	Median	0.51893	0.42012	134.47	2	2	Median	1.5736	1.7034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0884	1.094	NaN	1	1	Median	59381000	30058000	29324000	31135000	16639000	14495000	10861000	4420500	6440500	0	0	0	17386000	8998200	8387500	7711	4199	7285	47863;47864;47865;47866	64996;64997;64998;64999	64999			4	
DIFGLGPVLLLDATALK	1	Unmodified	1755.0182	0.018222832	2321	Q12894	IFRD2	Interferon-related developmental regulator 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	103.88	103.78	2	5.2326E-08	89643	160511_QHF_FH_JSI12i_2	131.26	86.494			0.57319	0.56182	54.883	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.3995	1.6827	NaN	1	1	Median	0.5716	0.5615	NaN	1	1	Median	0.88972	0.95813	NaN	1	1	Median	32021000	17855000	14166000	0	0	0	7594000	4181300	3412800	11746000	7880200	3865700	12681000	5794000	6887500	7712	2321	7286	47867;47868;47869	65000;65001;65002	65000			3	
DIFISKIVHK	2	Acetyl (K)	1240.718	0.71795849	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.844	69.53	3	2.0406E-09	38072	160513_QHF_FH_JSI11Kac_6	121.9	92.942			0.79778	0.75312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79778	0.75312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28572000	17842000	10730000	0	0	0	0	0	0	28572000	17842000	10730000	0	0	0	7713	1363	7287	47870	65003	65003	1295		1	
DIFLFITR	0	Unmodified	1023.5753	0.57531699	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	92.366	84.027	2	1.9337E-06	49170	160513_QHF_FH_JSI10Kac_6	147.04	126.09			0.11169	0.10251	280.61	5	5	Median	0.38953	0.33823	365.14	2	2	Median	13.818	16.091	NaN	1	1	Median	0.11169	0.10251	NaN	1	1	Median	0.073613	0.078995	NaN	1	1	Median	608870000	315510000	293360000	128160000	55062000	73098000	199610000	116960000	82652000	137790000	52901000	84889000	143310000	90585000	52722000	7714	2789	7288	47871;47872;47873;47874;47875;47876;47877;47878	65004;65005;65006;65007;65008;65009;65010;65011	65011			8	
DIFLQLK	1	Unmodified	875.51165	0.5116541	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.756	72.481	2	0.020219	62572	160511_QHF_FH_JSI12i_2	52.683	9.683			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7715	1716	7289	47879	65012	65012			1	
DIFMFITR	0	Unmodified	1041.5317	0.53173762	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.029	82.719	2	0.00027511	48257	160513_QHF_FH_JSI10Kac_6	130.22	130.22			0.13048	0.11187	289.56	7	7	Median	0.13048	0.11187	NaN	1	1	Median	0.47556	0.55541	506.38	2	2	Median	0.7728	0.7369	352.89	2	2	Median	0.48044	0.51081	311.11	2	2	Median	554400000	293300000	261100000	123520000	48128000	75388000	178040000	109230000	68805000	121080000	53444000	67632000	131770000	82498000	49272000	7716	4988	7290	47880;47881;47882;47883;47884;47885;47886;47887	65013;65014;65015;65016;65017;65018;65019;65020	65020			8	
DIFMFITR	0	Oxidation (M)	1057.5267	0.52665224	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.4								1	4	1		1	3	87.864	78.387	2	0.0075987	41990	160513_QHF_FH_JSI12Kac_6	82.279	40.849			1.8896	2.0759	67.181	3	3	Median	5.1627	4.3959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4368	1.5454	41.731	2	2	Median	72235000	31283000	40952000	18685000	3598300	15087000	0	0	0	0	0	0	53550000	27685000	25865000	7717	4988	7290	47888;47889;47890;47891;47892	65021;65022;65023;65024;65025	65024		2568	5	
DIFNKGFGFGLVK	2	Acetyl (K)	1482.7871	0.78710068	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	93.583	85.401	2	1.7716E-06	50104	160513_QHF_FH_JSI10Kac_6	131.82	105.43			1.7117	1.7124	136.22	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68056	0.65355	NaN	1	0	Median	4.3052	4.4867	NaN	1	1	Median	178980000	115040000	63941000	0	0	0	35642000	35642000	0	107770000	75338000	32428000	35576000	4062600	31513000	7718	1570	7291	47893;47894;47895	65026;65027;65028	65028	1583		3	
DIFNKGFGFGLVK	2	Unmodified	1440.7765	0.776536	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.871	88.761	3	0.01499	77079	160511_QHF_FH_JSI12i_3	45.257	32.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3063400	3063400	0	0	0	0	0	0	0	0	0	0	3063400	3063400	0	7719	1570	7291	47896	65029	65029			1	
DIFNLLFLLPSLK	1	Unmodified	1531.9014	0.90140216	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		103.09	97.365	2	1.2618E-14	53796	160513_QHF_FH_JSI11Kac_6	132.76	114.45			0.62963	0.74587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62963	0.74587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33987000	23765000	10222000	0	0	0	33987000	23765000	10222000	0	0	0	0	0	0	7720	3198	7292	47897;47898	65030;65031	65030			2	
DIFPYSENK	1	Unmodified	1111.5186	0.51858998	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	5.79	8						3			2	2	4	3	53.132	49.664	2	9.0323E-05	44997	160511_QHF_FH_JSI10i_1	112.84	83.68			1.4349	1.5348	70.437	11	10	Median	1.2684	1.0323	103.35	2	2	Median	0.96451	1.1294	105.23	2	2	Median	1.4249	1.4082	69.014	4	4	Median	1.4349	1.5348	76.323	3	2	Median	2467000000	1065900000	1401200000	551710000	221310000	330400000	561420000	281830000	279590000	627890000	261670000	366220000	726020000	301060000	424970000	7721	532	7293	47899;47900;47901;47902;47903;47904;47905;47906;47907;47908;47909	65032;65033;65034;65035;65036;65037;65038;65039;65040;65041;65042;65043;65044;65045	65037			14	
DIFQEIFDK	1	Unmodified	1153.5655	0.56554017	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	100.92	100.82	2	0.00012784	86674	160511_QHF_FH_JSI12i_2	108.98	83.241			0.51278	0.4523	63.324	6	6	Median	0.70022	0.57927	NaN	1	1	Median	0.43489	0.51582	95.346	2	2	Median	0.37551	0.35317	NaN	1	1	Median	0.48308	0.50524	97.647	2	2	Median	207020000	131950000	75064000	26271000	15395000	10875000	83472000	57454000	26017000	24032000	16686000	7346100	73241000	42415000	30826000	7722	1635	7294	47910;47911;47912;47913;47914;47915	65046;65047;65048;65049;65050;65051	65047			6	
DIFQEIFDKHYK	2	Acetyl (K)	1623.7933	0.79330827	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.496	80.158	3	1.7321E-08	44833	160513_QHF_FH_JSI11Kac_6	109.22	77.831			0.48938	0.46655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48938	0.46655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51084000	34679000	16405000	0	0	0	0	0	0	51084000	34679000	16405000	0	0	0	7723	1635	7295	47916	65052;65053	65053	1649		2	
DIFQEIYDK	1	Unmodified	1169.5605	0.56045479	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	77.585	76.94	2	2.7755E-11	70336	160511_QHF_FH_JSI12i_1	159.37	57.38			0.96148	0.96763	39.869	7	3	Median	1.9137	1.5923	70.405	2	1	Median	1.0109	1.2202	NaN	1	0	Median	0.93437	0.95002	2.5974	2	1	Median	0.78914	0.85332	3.6384	2	1	Median	2701000000	1394600000	1306400000	633030000	267830000	365200000	663250000	344340000	318920000	703000000	385170000	317820000	701670000	397250000	304420000	7724	576	7296	47917;47918;47919;47920;47921;47922;47923;47924	65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069;65070	65061			17	
DIFSEVGPVVSFR	0	Unmodified	1450.7456	0.7456298	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	99.37	99.247	2	1.9357E-07	87088	160511_QHF_FH_JSI11i_2	138.71	109.99			0.72852	0.82255	16.16	6	0	Median	0.9697	0.86553	NaN	1	0	Median	0.62112	0.73461	26.516	2	0	Median	0.74704	0.72037	16.241	2	0	Median	0.7374	0.83732	NaN	1	0	Median	235850000	125080000	110780000	48241000	25017000	23224000	62143000	39069000	23074000	73850000	35110000	38740000	51621000	25882000	25739000	7725	1401	7297	47925;47926;47927;47928;47929;47930	65071;65072;65073;65074;65075;65076	65075			4	
DIFYIENQK	1	Unmodified	1168.5764	0.57643921	4774	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	61.139	60.269	2	0.0021782	54754	160511_QHF_FH_JSI12i_1	75.043	54.173			0.6336	0.58923	18.552	2	2	Median	0.63068	0.51679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63654	0.67182	NaN	1	1	Median	76654000	45241000	31413000	34066000	20007000	14059000	0	0	0	0	0	0	42588000	25234000	17354000	7726	4774	7298	47931;47932	65077;65078	65077			2	
DIFYKAIQK	2	Acetyl (K)	1166.6336	0.63356015	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		75.881	65.112	2	0.022618	35079	160513_QHF_FH_JSI11Kac_4	66.073	36.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7727	2771	7299	47933	65079	65079	2676		1	
DIGAIAQVHAENGDIIAEEQQR	0	Unmodified	2376.167	0.16696535	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	68.206	67.372	3	5.7969E-23	58940	160511_QHF_FH_JSI11i_2	157.15	138.86			0.92729	1.0692	82.15	9	9	Median	0.81357	0.6961	80.137	2	2	Median	0.54163	0.66377	73.924	2	2	Median	0.70011	0.70339	59.223	2	2	Median	2.7416	3.1489	106.77	3	3	Plateau	497110000	265290000	231820000	95568000	51845000	43723000	109950000	76822000	33125000	134500000	79487000	55013000	157090000	57140000	99955000	7728	2739	7300	47934;47935;47936;47937;47938;47939;47940;47941;47942;47943	65080;65081;65082;65083;65084;65085;65086;65087;65088;65089;65090	65084			11	
DIGEGNLSTAAAAALAAAAVK	1	Unmodified	1883.9953	0.99525556	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.35	101.24	2;3	1.7466E-46	89381	160511_QHF_FH_JSI9i_1	156.67	140.27			1.0731	1.0208	17.729	8	0	Median	1.3148	1.08	7.903	2	0	Median	0.68804	0.80977	23.217	2	0	Median	1.0731	1.0463	3.5718	2	0	Median	0.95314	0.98163	24.22	2	0	Median	1780400000	874270000	906090000	372820000	152310000	220520000	460020000	283460000	176560000	518100000	241430000	276670000	429420000	197080000	232340000	7729	3685	7301	47944;47945;47946;47947;47948;47949;47950;47951	65091;65092;65093;65094;65095;65096;65097;65098;65099;65100;65101	65099			11	
DIGKPIEK	2	Unmodified	898.51238	0.51238239	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	17.942	17.472	3	0.035455	15085	160511_QHF_FH_JSI12i_1	35.511	19.308			1.7488	1.8372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7488	1.8372	NaN	1	1	Median	122290000	52544000	69744000	0	0	0	0	0	0	0	0	0	122290000	52544000	69744000	7730	455	7302	47952	65102	65102			1	
DIGKPIEK	2	Acetyl (K)	940.52295	0.52294707	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	44.303	35.467	2	0.038663	19603	160513_QHF_FH_JSI12Kac_3	59.35	21.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2346800	2346800	0	0	0	0	0	0	0	0	0	0	2346800	2346800	0	7731	455	7302	47953	65103	65103			1	
DIGPEVVK	1	Unmodified	855.47018	0.47018322	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	36.366	35.454	2	0.0033437	31076	160511_QHF_FH_JSI9i_1	73.26	43.075			1.426	1.3218	22.338	2	0	Median	1.8962	1.548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0724	1.1287	NaN	1	0	Median	275650000	114650000	161000000	130870000	40938000	89935000	0	0	0	0	0	0	144780000	73717000	71065000	7732	1747	7303	47954;47955	65104;65105;65106	65106			3	
DIGPEVVKK	2	Unmodified	983.56515	0.56514624	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	27.726	26.9	2	0.017076	22577	160511_QHF_FH_JSI11i_2	60.436	39.136			1.9402	1.9983	1.3141	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0582	2.017	NaN	1	1	Median	1.8289	1.9798	NaN	1	1	Median	66451000	26915000	39536000	0	0	0	0	0	0	41697000	17375000	24322000	24753000	9540100	15213000	7733	1747	7304	47956;47957;47958	65107;65108;65109	65109			3	
DIGPEVVKK	2	Acetyl (K)	1025.5757	0.57571092	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	52.079	42.753	2	0.023059	23049	160513_QHF_FH_JSI12Kac_3	76.827	57.04			1.1112	1.2038	64.415	3	1	Median	NaN	NaN	NaN	0	0	Median	2.5758	3.0445	NaN	1	1	Median	0.90742	0.88286	NaN	1	0	Median	1.1112	1.2038	NaN	1	0	Median	14089000	6000100	8088700	0	0	0	3252200	510730	2741500	4179300	2252700	1926600	6657300	3236700	3420600	7734	1747	7304	47959;47960;47961	65110;65111;65112	65111	1762		3	
DIGTNLPTLLWK	1	Unmodified	1369.7606	0.76055158	2990	Q5VV42	CDKAL1	Threonylcarbamoyladenosine tRNA methylthiotransferase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.87	100.74	2	0.00061378	88469	160511_QHF_FH_JSI11i_2	82.417	50.097			1.0315	1.0212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0315	1.0212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43972000	21528000	22444000	0	0	0	0	0	0	43972000	21528000	22444000	0	0	0	7735	2990	7305	47962	65113	65113			1	
DIHEELPK	1	Unmodified	979.49746	0.4974606	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.418	26.862	3	0.00201	24047	160511_QHF_FH_JSI12i_1	65.305	51.536			1.6879	1.7144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6879	1.7144	NaN	1	1	Median	26971000	12195000	14777000	0	0	0	0	0	0	0	0	0	26971000	12195000	14777000	7736	4481	7306	47963	65114	65114			1	
DIHELFVPENK	1	Unmodified	1339.6772	0.67721588	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	2.88	7	13						1		4	5	7	5	61.143	59.845	2;3	3.4426E-05	51739	160511_QHF_FH_JSI11i_2	104.52	86.659			1.143	1.3382	71.378	20	18	Median	1.2212	1.0494	53.894	4	4	Median	0.79447	0.91061	44.144	4	3	Median	1.6645	1.598	100.62	7	6	Median	1.4799	1.5871	65.214	5	5	Median	1616400000	780640000	835750000	336830000	176390000	160440000	269940000	144450000	125490000	575550000	229350000	346200000	434080000	230460000	203620000	7737	678	7307	47964;47965;47966;47967;47968;47969;47970;47971;47972;47973;47974;47975;47976;47977;47978;47979;47980;47981;47982;47983;47984	65115;65116;65117;65118;65119;65120;65121;65122;65123;65124;65125;65126;65127;65128;65129;65130;65131;65132;65133;65134;65135;65136;65137;65138	65133			24	
DIHELFVPENKLDHVR	1	Acetyl (K)	2002.0272	0.027224389	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.035	70.721	3	0.00035209	38821	160513_QHF_FH_JSI11Kac_6	82.707	72.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12862000	12862000	0	0	0	0	0	0	0	12862000	12862000	0	0	0	0	7738	678	7308	47985	65139	65139	335		1	
DIHFMPCSGLTGANLK	1	Unmodified	1759.8386	0.83856068	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.464		11	5							1	4	6	5	71.998	71.399	2;3	3.9646E-06	61969	160511_QHF_FH_JSI12i_3	85.28	0			0.98972	1.055	42.751	15	13	Median	1.2319	1.055	NaN	1	1	Median	0.72619	0.8932	43.831	4	4	Median	0.68818	0.67299	41.519	6	5	Median	1.2534	1.3867	18.509	4	3	Median	1932600000	1077900000	854630000	20684000	7806800	12878000	502150000	291440000	210720000	890980000	522630000	368350000	518730000	256050000	262680000	7739	1069	7309	47986;47987;47988;47989;47990;47991;47992;47993;47994;47995;47996;47997;47998;47999;48000;48001	65140;65141;65142;65143;65144;65145;65146;65147;65148;65149;65150;65151;65152;65153;65154;65155;65156;65157;65158	65156			19	
DIHSSVSR	0	Unmodified	899.44609	0.44609374	4779	Q9H871;Q96G75	RMND5A;RMND5B	Protein RMD5 homolog A;Protein RMD5 homolog B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		8.0567	7.8596	2	0.0084678	5491	160511_QHF_FH_JSI11i_2	57.281	31.172			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7740	4779	7310	48002	65159	65159			1	
DIHTLAQLISAYSLVDPEK	1	Unmodified	2112.1103	0.11028532	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		97.361	88.105	3	0.00010858	50289	160513_QHF_FH_JSI11Kac_6	70.414	60.756			1.2915	1.182	1.8385	2	0	Median	1.3486	1.1667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2368	1.1975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187010000	61262000	125750000	85061000	30028000	55033000	0	0	0	101950000	31234000	70719000	0	0	0	7741	602	7311	48003;48004	65160;65161	65160			2	
DIHTTTGK	1	Unmodified	871.43995	0.43994572	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	6.5659	6.1674	2	0.0064048	3965	160511_QHF_FH_JSI11i_2	71.501	33.856			2.2119	2.3466	0.050907	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3313	2.3458	NaN	1	1	Median	2.0987	2.3474	NaN	1	1	Median	97872000	39025000	58847000	0	0	0	0	0	0	61384000	24908000	36476000	36488000	14117000	22371000	7742	1631	7312	48005;48006	65162;65163	65163			2	
DIHYSVK	1	Unmodified	860.43922	0.43921744	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	19.743	18.966	3	0.0032639	15573	160511_QHF_FH_JSI11i_2	65.252	56.912			0.95065	0.92901	178.62	8	8	Median	1.3842	1.176	168.07	2	2	Median	0.96536	1.1889	279.8	2	2	Median	0.91955	0.92198	307.1	2	2	Median	0.77989	0.86673	144.55	2	2	Median	800440000	394140000	406300000	181060000	59458000	121600000	171940000	97217000	74722000	225030000	108240000	116790000	222420000	129230000	93186000	7743	5569	7313	48007;48008;48009;48010;48011;48012;48013;48014	65164;65165;65166;65167;65168;65169;65170;65171	65169			8	
DIIACGFDINK	1	Unmodified	1264.6122	0.61217279	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	6.14	7					1	3			1	3	3	4	72.264	68.974	2	1.1875E-05	63026	160511_QHF_FH_JSI10i_1	108.67	80.268			1.0533	1.1041	71.52	10	10	Median	2.3837	1.9229	NaN	1	1	Median	0.42595	0.50925	89.835	3	3	Median	0.97548	0.95377	95.71	2	2	Median	1.0533	1.1041	68.289	4	4	Median	630740000	322160000	308580000	41872000	18956000	22916000	177750000	101260000	76487000	253860000	137340000	116520000	157260000	64605000	92659000	7744	1226	7314	48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025	65172;65173;65174;65175;65176;65177;65178;65179;65180;65181;65182	65177			11	
DIIALNPLYR	0	Unmodified	1186.671	0.67100829	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		84.513	84.145	2	6.5943E-07	76680	160511_QHF_FH_JSI11i_1	121.62	69.764			0.21437	0.20931	40.926	3	3	Median	NaN	NaN	NaN	0	0	Median	0.15278	0.17828	NaN	1	1	Median	0.29263	0.28465	43.479	2	2	Median	NaN	NaN	NaN	0	0	Median	256660000	167550000	89107000	0	0	0	51621000	41260000	10361000	205040000	126290000	78746000	0	0	0	7745	1459	7315	48026;48027;48028	65183;65184;65185	65183			3	
DIICQIAYAR	0	Unmodified	1221.6176	0.61759251	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.06	4	5				3	3	1		2	7	3	4	68.573	63.878	2	3.3164E-17	34140	160513_QHF_FH_JSI11Kac_4	182.69	139.66			0.88225	1.0035	32.562	14	6	Median	1.246	1.0561	53.37	2	1	Median	0.84887	1.0035	37.074	6	4	Median	0.82438	0.81178	38.083	3	0	Median	1.075	1.1136	23.537	3	1	Median	1093200000	569890000	523300000	110520000	48395000	62127000	290940000	155280000	135660000	403160000	212760000	190400000	288560000	153460000	135100000	7746	1590	7316	48029;48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041;48042;48043;48044	65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197;65198;65199;65200;65201;65202;65203;65204;65205;65206;65207;65208	65196			23	
DIIEHLNTSGAPADTSDPLQQICK	1	Unmodified	2622.2595	0.2595451	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	77.161	76.817	3	9.5303E-05	70031	160511_QHF_FH_JSI12i_1	49.25	45.268			1.0951	1.1254	24.999	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.63201	0.74309	NaN	1	1	Median	0.78034	0.74822	NaN	1	1	Median	1.0951	1.1496	NaN	1	0	Median	102360000	57182000	45174000	0	0	0	28422000	18451000	9971700	36003000	22687000	13316000	37930000	16045000	21886000	7747	1467	7317	48045;48046;48047	65209;65210;65211	65210			3	
DIIFAIK	1	Unmodified	818.49019	0.49019038	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.73	5	8	3				2	4		4	6	7	5	74.692	71.132	2	0.010614	64260	160511_QHF_FH_JSI11i_3	64.776	47.01			0.53293	0.62139	99.787	21	19	Median	1.392	1.1878	126.12	4	3	Median	1.0235	1.168	95.628	6	5	Median	0.91763	0.91997	115.29	6	6	Median	0.4119	0.45476	77.184	5	5	Median	591400000	298220000	293170000	87238000	40911000	46327000	157590000	76262000	81325000	178220000	92672000	85546000	168350000	88377000	79976000	7748	990	7318	48048;48049;48050;48051;48052;48053;48054;48055;48056;48057;48058;48059;48060;48061;48062;48063;48064;48065;48066;48067;48068;48069	65212;65213;65214;65215;65216;65217;65218;65219;65220;65221;65222;65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236;65237	65212			26	
DIIFAIKK	2	Unmodified	946.58515	0.5851534	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	56.503	56.379	3	0.0057779	49891	160511_QHF_FH_JSI11i_3	51.854	35.652			0.92754	0.95328	133.42	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24063	0.22301	NaN	1	1	Median	0.92754	0.95328	146.75	2	2	Median	103910000	46790000	57118000	0	0	0	0	0	0	30591000	12692000	17899000	73317000	34098000	39219000	7749	990	7319	48070;48071;48072;48073	65238;65239;65240;65241	65238			4	
DIIFAIKK	2	Acetyl (K)	988.59572	0.59571809	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.498							6	5		1	3	4	3	81.382	70.853	2	0.0012132	37277	160513_QHF_FH_JSI10Kac_4	100.45	64.571			0.56897	0.6627	57.142	7	6	Median	1.9028	1.5648	NaN	1	1	Median	0.65556	0.78745	17.612	2	1	Median	0.41155	0.40233	2.7563	2	2	Median	0.39913	0.43787	58.606	2	2	Median	95753000	54849000	40905000	5297600	3820200	1477400	19053000	13568000	5484300	36748000	16069000	20678000	34656000	21391000	13265000	7750	990	7319	48074;48075;48076;48077;48078;48079;48080;48081;48082;48083;48084	65242;65243;65244;65245;65246;65247;65248;65249;65250;65251;65252;65253	65243	785		12	
DIIGLAETGSGK	1	Unmodified	1159.6085	0.60846762	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	59.138	58.172	2	3.6415E-05	51522	160511_QHF_FH_JSI9i_1	112.83	61.488			0.5477	0.44279	67.599	3	3	Median	0.95647	0.77696	79.519	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39023	0.40564	NaN	1	1	Median	499720000	263850000	235870000	347730000	174970000	172770000	0	0	0	0	0	0	151990000	88881000	63108000	7751	4640	7320	48085;48086;48087	65254;65255;65256	65255			3	
DIIGVAETGSGK	1	Unmodified	1145.5928	0.59281755	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				2	3	3	2	48.669	45.384	2	8.7517E-06	41280	160511_QHF_FH_JSI12i_1	124.67	77.471			0.88797	1.0002	66.61	10	7	Median	1.3833	1.1428	100.44	2	2	Median	0.97772	1.1554	55.164	3	2	Median	1.1519	1.134	102.3	3	2	Median	0.72781	0.76783	19.642	2	1	Median	1185700000	621660000	564090000	298390000	134170000	164230000	362940000	213800000	149140000	340850000	179420000	161420000	183580000	94272000	89306000	7752	4449	7321	48088;48089;48090;48091;48092;48093;48094;48095;48096;48097	65257;65258;65259;65260;65261;65262;65263;65264;65265;65266;65267;65268;65269	65260			12	
DIIHDPGR	0	Unmodified	921.46683	0.46682918	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.34	5.69	8	8	5				4	4		6	7	7	9	20.422	17.591	2;3	0.00063795	15070	160511_QHF_FH_JSI9i_2	109.86	71.624			0.93057	0.98211	12.732	29	1	Median	1.3151	1.0987	13.999	6	0	Median	0.84856	1.0091	7.0893	7	0	Median	0.99392	0.96949	8.4403	7	0	Median	0.83884	0.91775	12.565	9	1	Median	9063600000	4451000000	4612600000	1522900000	637490000	885390000	1870600000	980130000	890510000	3213600000	1550300000	1663400000	2456500000	1283100000	1173400000	7753	2039	7322	48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111;48112;48113;48114;48115;48116;48117;48118;48119;48120;48121;48122;48123;48124;48125;48126	65270;65271;65272;65273;65274;65275;65276;65277;65278;65279;65280;65281;65282;65283;65284;65285;65286;65287;65288;65289;65290;65291;65292;65293;65294;65295;65296;65297;65298;65299;65300;65301;65302;65303;65304;65305;65306;65307;65308	65290			39	
DIIHDPGRGAPLAK	1	Unmodified	1458.7943	0.79431133	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.896	35.438	3	0.0044721	29560	160511_QHF_FH_JSI10i_3	48.112	19.306			1.3961	1.5966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3961	1.5966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48960000	15726000	33234000	0	0	0	48960000	15726000	33234000	0	0	0	0	0	0	7754	2039	7323	48127	65309;65310	65310			2	
DIIHFFR	0	Unmodified	946.50249	0.5024864	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	3.94		1	8						1	2	3	2	3	70.218	68.447	2;3	0.0019752	59539	160511_QHF_FH_JSI12i_3	114.54	49.763			1.024	0.9838	37.026	9	1	Median	1.261	1.0312	20.773	2	0	Median	0.80729	0.94993	0.30594	2	0	Median	1.0278	0.96383	11.249	2	0	Median	1.024	1.0375	60.951	3	1	Median	1114800000	522560000	592230000	184630000	72678000	111950000	201110000	91098000	110010000	371700000	193250000	178450000	357350000	165530000	191810000	7755	1695	7324	48128;48129;48130;48131;48132;48133;48134;48135;48136;48137	65311;65312;65313;65314;65315;65316;65317;65318;65319;65320;65321;65322;65323	65322			13	
DIIIFVGTPVQK	1	Unmodified	1328.7704	0.77038799	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	88.227	87.929	2	6.2895E-05	79831	160511_QHF_FH_JSI10i_1	107.24	76.557			0.21741	0.2308	46.613	2	2	Median	NaN	NaN	NaN	0	0	Median	0.1554	0.16599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30418	0.32091	NaN	1	1	Median	14752000	13648000	1103700	0	0	0	8756900	8184000	572860	0	0	0	5994900	5464100	530800	7756	1576	7325	48138;48139;48140	65324;65325;65326	65326			3	
DIILFSFK	1	Unmodified	981.55352	0.55351892	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		89.918	80.569	2	0.011405	45089	160513_QHF_FH_JSI11Kac_6	58.981	38.699			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7757	3196	7326	48141	65327	65327			1	
DIILPFR	0	Unmodified	872.51199	0.51198846	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.44	6	4					2	4		4	4	3	5	81.436	76.588	2	0.0048398	70419	160511_QHF_FH_JSI9i_2	102.98	11.396			0.86237	0.87927	16.326	14	3	Median	1.0704	0.89174	20.38	3	1	Median	0.72196	0.86776	23.206	4	1	Median	0.99465	1.0202	12.818	3	0	Plateau	0.77559	0.84199	9.8443	4	1	Median	756080000	386380000	369710000	125250000	50169000	75082000	185810000	102870000	82935000	280220000	154910000	125310000	164800000	78427000	86378000	7758	4017	7327	48142;48143;48144;48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155;48156;48157	65328;65329;65330;65331;65332;65333;65334;65335;65336;65337;65338;65339;65340;65341;65342;65343	65338			16	
DIILQSNPLLEAFGNAK	1	Unmodified	1841.9887	0.98871362	2332	Q12965;O00160	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	101.96	101.86	2	4.7464E-22	92611	160511_QHF_FH_JSI11i_1	211.67	179.06			0.7	0.79964	43.14	4	1	Median	1.1171	0.91983	NaN	1	0	Median	0.5972	0.69515	NaN	1	0	Median	0.37997	0.37311	NaN	1	0	Median	0.8205	0.94306	NaN	1	1	Median	441140000	243820000	197330000	136010000	60408000	75604000	138490000	80699000	57788000	100670000	75243000	25430000	65972000	27467000	38504000	7759	2332	7328	48158;48159;48160;48161;48162	65344;65345;65346	65344			3	
DIILYVK	1	Unmodified	862.51641	0.51640513	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.11	6.62	4	1					2	2			3	2	4	69.345	64.28	2	0.0084674	58610	160511_QHF_FH_JSI10i_1	86.086	21.31			3.2037	3.729	147.75	9	8	Median	NaN	NaN	NaN	0	0	Median	0.68207	0.79941	144.84	3	2	Median	5.0735	4.9032	6.3605	2	2	Median	10.447	11.191	176.4	4	4	Linear	385310000	151180000	234120000	0	0	0	108290000	61598000	46691000	84277000	20634000	63642000	192740000	68952000	123790000	7760	3218	7329	48163;48164;48165;48166;48167;48168;48169;48170;48171	65347;65348;65349;65350;65351;65352;65353;65354;65355	65351			9	
DIINEEEVQFLK	1	Unmodified	1475.7508	0.75077476	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	83.729	83.264	2;3	3.2561E-31	75727	160511_QHF_FH_JSI10i_1	215.56	160.58			0.92741	0.98661	14.637	4	0	Median	1.1727	0.96272	NaN	1	0	Median	0.85625	1.0111	NaN	1	0	Median	0.79153	0.76126	NaN	1	0	Median	1.0045	1.0577	NaN	1	0	Median	2454300000	1148300000	1305900000	458150000	238620000	219530000	803750000	349000000	454750000	583700000	267260000	316450000	608690000	293470000	315220000	7761	1664	7330	48172;48173;48174;48175;48176;48177	65356;65357;65358;65359;65360;65361;65362;65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373	65367			18	
DIINMLFYHDR	0	Unmodified	1435.6918	0.69182009	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	13.4	5.2			1						4	2		1	2	88.416	81.741	3	1.1384E-05	43182	160513_QHF_FH_JSI9Kac_6	89.013	72.48			2.3617	2.0248	80.413	3	3	Median	1.3271	1.1359	81.746	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8009	2.9913	NaN	1	1	Median	90247000	49026000	41220000	55518000	23682000	31836000	0	0	0	0	0	0	34729000	25345000	9384000	7762	855	7331	48178;48179;48180;48181;48182	65374;65375;65376;65377;65378	65376			5	
DIINNTSLAELEK	1	Unmodified	1458.7566	0.75658842	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				72.309	71.379	2	0.00012004	63485	160511_QHF_FH_JSI9i_1	110.31	66.794			0.60169	0.51877	NaN	1	1	Median	0.60169	0.51877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37098000	26848000	10250000	37098000	26848000	10250000	0	0	0	0	0	0	0	0	0	7763	695	7332	48183	65379	65379			1	
DIINPDK	1	Unmodified	813.42323	0.42323303	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.247	24.086	2	0.023109	21037	160511_QHF_FH_JSI11i_1	58.917	17.265			0.27488	0.26817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27488	0.26817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28335000	19880000	8454700	0	0	0	0	0	0	28335000	19880000	8454700	0	0	0	7764	4900	7333	48184	65380	65380			1	
DIIPETLFIPR	0	Unmodified	1312.7391	0.73908786	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.93	100.82	2	0.0007418	91467	160511_QHF_FH_JSI10i_1	81.338	29.342			0.74385	0.76186	15.481	4	3	Median	0.75988	0.64581	NaN	1	0	Median	0.64207	0.76963	NaN	1	1	Median	0.95915	0.94173	NaN	1	1	Median	0.72816	0.75416	NaN	1	1	Median	173870000	103040000	70825000	31350000	17227000	14123000	54255000	34736000	19518000	41745000	20373000	21371000	46520000	30708000	15812000	7765	5745	7334	48185;48186;48187;48188	65381;65382;65383;65384	65383			4	
DIIPFIDK	1	Unmodified	959.53278	0.53278348	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	1	3	1	82.355	81.685	2	0.0019272	72708	160511_QHF_FH_JSI10i_2	81.548	14.866			0.95192	0.99246	81.521	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44221	0.43527	82.778	3	3	Plateau	1.6971	1.9008	NaN	1	1	Median	58815000	25135000	33680000	8930800	0	8930800	0	0	0	40805000	21485000	19321000	9078600	3650700	5427900	7766	5241	7335	48189;48190;48191;48192;48193;48194;48195	65385;65386;65387;65388;65389;65390;65391;65392	65392			8	
DIISDTSGDFR	0	Unmodified	1224.5622	0.5622457	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	57.74	54.122	2	2.0466E-09	48267	160511_QHF_FH_JSI9i_1	131.52	122.57			0.89508	0.92178	7.6269	6	0	Median	1.2221	1.0003	NaN	1	0	Median	0.79135	0.93691	14.54	2	0	Median	0.93688	0.91237	3.6244	2	0	Median	0.8718	0.90773	NaN	1	0	Median	988090000	528140000	459950000	311590000	141710000	169880000	262950000	167510000	95442000	264660000	134240000	130430000	148890000	84689000	64199000	7767	870	7336	48196;48197;48198;48199;48200;48201	65393;65394;65395;65396;65397;65398;65399;65400;65401	65401			9	
DIISDTSGDFRK	1	Unmodified	1352.6572	0.65720872	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.21	8	10	7				6	10		9	10	12	10	50.472	45.961	2;3	1.677E-94	40789	160511_QHF_FH_JSI10i_2	267.29	175.43			0.96612	1.029	29.931	39	5	Median	1.1598	0.93925	42.414	8	1	Median	0.83726	1.0062	28.399	9	1	Median	1.073	1.0627	32.578	12	3	Median	0.95273	1.0355	8.6368	10	0	Median	38008000000	18381000000	19626000000	5634200000	2420100000	3214100000	7836400000	4125600000	3710800000	14631000000	6520000000	8110600000	9906300000	5315400000	4591000000	7768	870	7337	48202;48203;48204;48205;48206;48207;48208;48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242	65402;65403;65404;65405;65406;65407;65408;65409;65410;65411;65412;65413;65414;65415;65416;65417;65418;65419;65420;65421;65422;65423;65424;65425;65426;65427;65428;65429;65430;65431;65432;65433;65434;65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445;65446;65447;65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467;65468;65469;65470;65471;65472;65473;65474;65475;65476;65477;65478;65479;65480;65481;65482;65483;65484;65485;65486;65487;65488;65489;65490;65491;65492;65493;65494;65495;65496;65497;65498;65499;65500;65501;65502;65503;65504;65505	65491			103	
DIISELLTSDDMK	1	Unmodified	1478.7174	0.71742572	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.72	101.7	2	1.9234E-09	92422	160511_QHF_FH_JSI10i_1	108.35	66.472			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7769	5138	7338	48243	65506	65506			1	
DIISIAEDEDLR	0	Unmodified	1387.6831	0.68308912	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	77.894	77.42	2	1.3996E-10	70343	160511_QHF_FH_JSI10i_1	128.81	96.876			0.90141	0.85115	13.137	4	3	Median	0.98573	0.8057	NaN	1	1	Median	0.87559	1.0252	NaN	1	1	Median	0.92799	0.89916	NaN	1	1	Median	0.74742	0.76106	NaN	1	0	Median	424680000	228840000	195850000	73215000	32631000	40584000	140730000	65418000	75309000	97892000	58506000	39386000	112850000	72284000	40567000	7770	1023	7339	48244;48245;48246;48247;48248;48249	65507;65508;65509;65510;65511;65512;65513;65514	65512			8	
DIISIAEDEDLRVHFEESSK	1	Unmodified	2331.123	0.12303485	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	84.106	83.915	3	2.0494E-09	72847	160511_QHF_FH_JSI12i_3	112.74	93.701			1.1325	1.1464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1325	1.1464	NaN	1	0	Median	35124000	22519000	12605000	0	0	0	0	0	0	0	0	0	35124000	22519000	12605000	7771	1023	7340	48250	65515;65516	65516			2	
DIIVEFIK	1	Unmodified	975.56408	0.56408361	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	87.647	87.149	2	0.0027636	79095	160511_QHF_FH_JSI10i_1	85.064	67.028			0.51882	0.49873	28.34	4	4	Median	0.63367	0.54949	NaN	1	1	Median	0.58472	0.6255	NaN	1	1	Median	0.46034	0.45266	NaN	1	1	Median	0.28916	0.32601	NaN	1	1	Median	42756000	30056000	12699000	6289300	3486100	2803200	9428400	6783600	2644800	15668000	12229000	3439400	11369000	7557600	3811800	7772	3582	7341	48251;48252;48253;48254;48255	65517;65518;65519;65520;65521	65519			5	
DIKDTTVGTLSQR	1	Acetyl (K)	1474.7627	0.76273643	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		63.361	53.748	2	0.028431	28056	160513_QHF_FH_JSI11Kac_3	54.776	29.117			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1279700	1279700	0	0	0	0	0	0	0	1279700	1279700	0	0	0	0	7773	1748	7342	48256	65522	65522			1	
DIKGSYVSIHSSGFR	1	Acetyl (K)	1693.8424	0.84238373	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	65.771	56.593	2;3	1.5642E-23	30699	160513_QHF_FH_JSI11Kac_6	155.98	113.23			0.80628	0.82957	137.2	6	3	Median	6.8211	5.8435	NaN	1	1	Median	11.181	13.324	NaN	1	1	Median	0.7372	0.724	16.607	2	0	Median	0.58963	0.62405	42.902	2	1	Median	233220000	71964000	161260000	33612000	1006900	32605000	85261000	12809000	72452000	58467000	33056000	25411000	55880000	25091000	30789000	7774	97	7343	48257;48258;48259;48260;48261;48262;48263	65523;65524;65525;65526;65527;65528;65529;65530;65531	65524	64		9	
DIKNVPFK	2	Acetyl (K)	1001.5546	0.55458155	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.606					1	7	5			1	4	4	4	64.095	54.08	2	0.00089256	29513	160513_QHF_FH_JSI12Kac_4	119.41	52.374			0.36528	0.44006	323.42	11	10	Median	NaN	NaN	NaN	0	0	Median	0.36528	0.44006	253.02	3	2	Median	0.14403	0.14044	347.13	4	4	Median	0.60248	0.66549	413.77	4	4	Median	348420000	214160000	134260000	0	0	0	111560000	66487000	45072000	111990000	77304000	34690000	124870000	70370000	54499000	7775	1480	7344	48264;48265;48266;48267;48268;48269;48270;48271;48272;48273;48274;48275;48276	65532;65533;65534;65535;65536;65537;65538;65539;65540;65541;65542;65543;65544	65542	1470;1471		13	
DIKPDNFLMGIGR	1	Unmodified	1474.7602	0.76023401	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	79.525	79.06	2;3	3.1927E-05	70579	160511_QHF_FH_JSI11i_3	91.62	84.934			0.9695	0.9523	7.4119	8	0	Median	1.1061	0.94676	NaN	1	0	Median	0.92438	1.1343	NaN	1	0	Median	1.0518	0.96854	2.6636	3	0	Plateau	0.92568	0.9381	8.2736	3	0	Plateau	585070000	300850000	284220000	28756000	11407000	17349000	76952000	43135000	33817000	276890000	141300000	135590000	202470000	105010000	97463000	7776	1633	7345	48277;48278;48279;48280;48281;48282;48283;48284	65545;65546;65547;65548;65549;65550;65551;65552;65553;65554;65555;65556;65557	65545			13	
DIKPENLLLGLK	2	Unmodified	1351.8075	0.80750177	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	85.612	84.802	3	0.00050854	73237	160511_QHF_FH_JSI12i_2	65.563	56.833			0.76761	0.79381	23.297	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95608	0.93597	NaN	1	1	Median	0.61628	0.67325	NaN	1	1	Median	21767000	10787000	10980000	0	0	0	0	0	0	13459000	5704100	7754900	8307900	5082600	3225400	7777	4088	7346	48285;48286;48287;48288;48289;48290	65558;65559;65560;65561;65562;65563	65559			6	
DIKPIIK	2	Unmodified	825.53239	0.53238955	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	32.554	31.421	3	0.056116	27520	160511_QHF_FH_JSI10i_2	31.289	8.2701			0.7289	0.86133	114.22	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31089	0.38406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.709	1.9317	NaN	1	1	Median	20894000	13669000	7225700	0	0	0	9679200	8215900	1463300	0	0	0	11215000	5452700	5762400	7778	2501	7347	48291;48292	65564;65565	65565			2	
DIKPQNLLLDPDTAVLK	2	Unmodified	1892.0619	0.06187856	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		89.225	88.686	3	0.049168	77986	160511_QHF_FH_JSI11i_2	31.462	20.646			0.66875	0.65593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66875	0.65593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11440000	8372900	3067400	0	0	0	0	0	0	11440000	8372900	3067400	0	0	0	7779	1689	7348	48293	65566	65566			1	
DIKPQNLLVDPDTAVLK	2	Unmodified	1878.0462	0.046228496	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	83.446	83.011	3	0.012238	75648	160511_QHF_FH_JSI12i_1	44.831	33.776			0.76981	0.76777	9.7881	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86025	0.82279	NaN	1	1	Median	0.68887	0.71643	NaN	1	1	Median	40711000	25883000	14828000	0	0	0	0	0	0	21110000	12253000	8857500	19601000	13631000	5970600	7780	1688	7349	48294;48295	65567;65568	65568			2	
DILADLIPK	1	Unmodified	996.58555	0.58554733	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	3.07	4	4	6				1			3	4	4	4	97.73	97.557	2	3.5449E-06	86476	160511_QHF_FH_JSI10i_2	122.52	94.342			0.95664	1.06	21.591	12	3	Median	1.2627	1.06	3.7881	3	0	Plateau	0.92405	1.1317	22.909	3	1	Median	1.0585	0.92434	18.178	4	2	Linear	0.9698	1.0711	15.985	2	0	Median	1408600000	681990000	726630000	268320000	130380000	137940000	387540000	168500000	219040000	369400000	194350000	175050000	383360000	188760000	194600000	7781	517	7350	48296;48297;48298;48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309;48310	65569;65570;65571;65572;65573;65574;65575;65576;65577;65578;65579;65580;65581;65582;65583;65584;65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602;65603;65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614;65615;65616;65617	65615			49	
DILADVNHPFVVK	1	Unmodified	1465.7929	0.79291434	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								2	1		1	76.864	75.988	3	8.6367E-07	66973	160511_QHF_FH_JSI9i_2	123.64	102.08			0.70382	0.71012	48.213	4	4	Median	1.268	1.1276	57.116	2	2	Median	0.46988	0.57287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59017	0.66973	NaN	1	1	Median	215880000	104150000	111730000	95277000	40496000	54780000	65766000	43934000	21832000	0	0	0	54838000	19722000	35116000	7782	2669	7351	48311;48312;48313;48314	65618;65619;65620;65621	65620			4	
DILALMEVK	1	Unmodified	1030.5733	0.57326808	4046	Q96EK4	THAP11	THAP domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	95.665	95.311	2	0.00065147	82078	160511_QHF_FH_JSI12i_2	87.308	77.321			4.1433	4.3048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1433	4.3048	NaN	1	1	Median	5968600	296870	5671700	2225500	0	2225500	0	0	0	0	0	0	3743100	296870	3446200	7783	4046	7352	48315;48316;48317;48318;48319	65622;65623;65624;65625;65626	65622			5	
DILAPNLQWHAGR	0	Unmodified	1489.779	0.77899561	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.5	0.5		3	3							1	1	2	2	66.229	65.748	2;3	2.4079E-05	56587	160511_QHF_FH_JSI12i_3	80.69	72.779			0.97522	0.91779	16.704	6	0	Median	1.0568	0.90922	NaN	1	0	Median	0.69528	0.83849	NaN	1	0	Median	0.86288	0.85145	33.034	2	0	Median	0.9788	0.97701	7.5169	2	0	Median	338300000	163100000	175200000	44365000	24490000	19875000	56991000	33487000	23504000	83384000	39321000	44064000	153560000	65804000	87758000	7784	3382	7353	48320;48321;48322;48323;48324;48325	65627;65628;65629;65630;65631	65630			3	
DILAVLTMK	1	Unmodified	1002.5784	0.57835346	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	99.765	99.63	2	0.0016682	85673	160511_QHF_FH_JSI12i_2	76.827	42.019			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13891000	13891000	0	3183500	3183500	0	3204500	3204500	0	3987900	3987900	0	3515400	3515400	0	7785	2291	7354	48326;48327;48328;48329	65632;65633;65634;65635	65632			4	
DILAVLTMK	1	Oxidation (M)	1018.5733	0.57326808	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	1	0	By MS/MS		By MS/MS		15	0								2		1		1		87.337	76.856	2	0.011693	40320	160513_QHF_FH_JSI11Kac_5	70.919	54.143			2.0027	1.8647	38.729	2	2	Median	1.6027	1.418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5025	2.4521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2548600	920490	1628100	860940	402990	457950	0	0	0	1687600	517500	1170100	0	0	0	7786	2291	7354	48330;48331	65636;65637	65637		1899	2	
DILEIGAQWSILRK	1	Unmodified	1640.925	0.92499115	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		99.526	99.526	3	0.0006858	88629	160511_QHF_FH_JSI11i_3	65.805	40.483			0.12894	0.12424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12894	0.12424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5212900	4972700	240160	0	0	0	0	0	0	5212900	4972700	240160	0	0	0	7787	1627	7355	48332	65638	65638			1	
DILELGGPEGDAASGTISK	1	Unmodified	1828.9054	0.9054375	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		72.648	72.016	2	1.9891E-06	65538	160511_QHF_FH_JSI11i_1	104.55	72.706			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28306000	16294000	12012000	12012000	0	12012000	0	0	0	16294000	16294000	0	0	0	0	7788	4900	7356	48333;48334	65639;65640	65639			2	
DILETHLR	0	Unmodified	995.53999	0.53999412	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.72	6.23		8	4					3	3	3	4	6	5	40.833	38.17	2;3	8.2639E-05	33670	160511_QHF_FH_JSI10i_2	111.17	94.834			1.0764	1.1009	26.732	15	3	Median	1.3204	1.1234	20.336	2	0	Median	0.90884	1.0498	12.54	3	1	Median	1.107	1.1009	11.672	5	1	Median	1.0764	1.2032	43.116	5	1	Median	3480100000	1593500000	1886600000	513220000	198590000	314630000	770310000	415630000	354680000	1139700000	536580000	603100000	1056800000	442690000	614160000	7789	2094	7357	48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352	65641;65642;65643;65644;65645;65646;65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667	65661			27	
DILFPYIEENVK	1	Unmodified	1478.7657	0.76569654	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	3	2	1	96.646	96.455	2	1.4251E-05	87549	160511_QHF_FH_JSI11i_1	114.83	93.37			1.2032	1.1986	50.951	8	5	Median	1.3978	1.1855	42.008	2	1	Median	1.3989	1.6504	68.971	3	3	Median	1.4263	1.412	63.632	2	1	Median	0.71176	0.75579	NaN	1	0	Median	320710000	157510000	163200000	50977000	24520000	26457000	140230000	63687000	76547000	84482000	43707000	40775000	45021000	25596000	19425000	7790	5317	7358	48353;48354;48355;48356;48357;48358;48359;48360	65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680	65668			13	
DILGGIR	0	Unmodified	742.43374	0.43373813	5224	Q9P2T1	GMPR2	GMP reductase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	48.747	47.97	2	0.013061	40788	160511_QHF_FH_JSI12i_2	68.398	17.362			0.81001	0.89158	26.212	7	2	Median	1.1176	0.97584	NaN	1	0	Median	0.69569	0.81285	13.073	2	1	Median	0.72429	0.71033	32.348	2	1	Median	0.97526	1.0334	35.723	2	0	Median	240290000	122010000	118270000	28304000	13595000	14709000	66367000	37415000	28952000	80004000	41882000	38122000	65614000	29123000	36491000	7791	5224	7359	48361;48362;48363;48364;48365;48366;48367	65681;65682;65683;65684;65685	65682			5	
DILGPPMYEMEVSQR	0	Unmodified	1763.8222	0.82224192	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	82.722	82.209	2	0.0005192	74957	160511_QHF_FH_JSI11i_1	75.479	48.692			0.57606	0.5874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57606	0.5874	NaN	1	1	Median	9129100	6309000	2820100	0	0	0	0	0	0	0	0	0	9129100	6309000	2820100	7792	3355	7360	48368;48369	65686;65687	65686			2	
DILHATFEESLDK	1	Unmodified	1516.7409	0.74093835	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.317	70.432	2	0.022335	62667	160511_QHF_FH_JSI10i_2	49.35	32.633			1.3646	0.9828	25.113	4	1	Linear	1.0478	0.91184	NaN	1	0	Median	0.57993	0.70102	NaN	1	1	Median	1.2403	1.2694	NaN	1	0	Median	0.96683	1.0593	NaN	1	0	Median	100510000	53227000	47286000	23986000	11228000	12759000	20617000	14325000	6292100	34557000	16922000	17634000	21353000	10752000	10601000	7793	2305	7361	48370;48371;48372;48373	65688;65689	65689			2	
DILIACR	0	Unmodified	859.45857	0.45857268	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	2	2	42.205	41.581	2	0.012997	37594	160511_QHF_FH_JSI11i_1	71.949	37.057			2.7458	2.7968	133.13	5	5	Median	NaN	NaN	NaN	0	0	Median	0.29078	0.34138	NaN	1	1	Median	0.84154	0.83204	180.16	2	2	Median	2.9916	3.2251	20.15	2	2	Median	505800000	257060000	248740000	0	0	0	96748000	62362000	34386000	269010000	140870000	128140000	140040000	53825000	86214000	7794	1544	7362	48374;48375;48376;48377;48378	65690;65691;65692;65693;65694	65691			5	
DILIDPIR	0	Unmodified	953.55458	0.55458155	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			2	2	1	4	73.801	69.469	2	0.00032001	64375	160511_QHF_FH_JSI11i_1	112.17	65.104			0.8795	0.95963	32.067	8	4	Median	0.822	0.68036	58.439	2	1	Median	0.77418	0.89103	9.3839	2	1	Median	1.0868	1.0199	NaN	1	0	Median	0.94559	0.96716	27.669	3	2	Median	277230000	142690000	134540000	71608000	35148000	36460000	73391000	41628000	31763000	71438000	31752000	39686000	60789000	34159000	26630000	7795	3377	7363	48379;48380;48381;48382;48383;48384;48385;48386;48387	65695;65696;65697;65698;65699;65700;65701;65702;65703	65695			9	
DILIEHYK	1	Unmodified	1029.5495	0.54949617	4778	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.148	43.665	3	0.030963	37531	160511_QHF_FH_JSI11i_2	32.812	20.857			0.57314	0.56108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57314	0.56108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10989000	7717400	3271500	0	0	0	0	0	0	10989000	7717400	3271500	0	0	0	7796	4778	7364	48388	65704	65704			1	
DILILSSHKK	2	Unmodified	1152.6867	0.68665836	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	37.676	37.567	2;3	0.0035751	32046	160511_QHF_FH_JSI12i_3	75.294	63.804			3.12	3.0019	20.56	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7671	3.4716	NaN	1	1	Median	2.5842	2.5957	NaN	1	1	Median	91846000	40824000	51022000	0	0	0	0	0	0	20405000	5881700	14523000	71441000	34942000	36499000	7797	2584	7365	48389;48390;48391	65705;65706;65707	65707			3	
DILIQYDR	0	Unmodified	1034.5397	0.53965977	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	5.83		4	2			3	3	2	1	3	4	3	5	58.888	52.284	2	4.6005E-16	28279	160513_QHF_FH_JSI10Kac_4	163.77	97.093			0.80959	0.89564	26.038	15	8	Median	1.2179	1.0425	13.555	3	1	Median	0.68767	0.82645	9.3594	4	2	Median	0.6125	0.62254	25.719	3	2	Median	0.81232	0.90257	35.961	5	3	Median	1109100000	487380000	621720000	280240000	111800000	168440000	444760000	198540000	246220000	155130000	68204000	86929000	228970000	108830000	120140000	7798	1987	7366	48392;48393;48394;48395;48396;48397;48398;48399;48400;48401;48402;48403;48404;48405;48406	65708;65709;65710;65711;65712;65713;65714;65715;65716;65717;65718;65719;65720;65721;65722;65723;65724	65712			17	
DILKPEIMEEIVMETR	1	Unmodified	1944.99	0.99003553	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		101.32	101.23	3	0.00041096	89756	160511_QHF_FH_JSI10i_2	72.184	57.57			0.56902	0.62674	9.7809	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48683	0.58486	NaN	1	1	Median	0.66509	0.67162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136580000	93018000	43567000	0	0	0	52854000	42031000	10822000	83731000	50987000	32745000	0	0	0	7799	2476	7367	48407;48408	65725;65726	65726			2	
DILLKSGGR	1	Acetyl (K)	999.57129	0.57129425	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		54.604	43.748	2	0.034753	25376	160513_QHF_FH_JSI11Kac_4	56.729	14.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1687000	1687000	0	0	0	0	0	0	0	1687000	1687000	0	0	0	0	7800	1730	7368	48409	65727	65727			1	
DILLMLSDMDINAIAGTLK	1	Unmodified	2046.0741	0.074099506	2335	Q12979	ABR	Active breakpoint cluster region-related protein	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									3	1		2		101.39	92.054	4	0.052542	52864	160513_QHF_FH_JSI11Kac_6	13.174	0.79469			0.93046	0.90726	28.938	3	0	Plateau	1.7483	1.4976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93046	0.90726	0	2	0	Median	NaN	NaN	NaN	0	0	Median	114630000	60022000	54610000	24626000	12641000	11985000	0	0	0	90006000	47381000	42626000	0	0	0	7801	2335	7369	48410;48411;48412	65728	65728			1	
DILLQGLK	1	Unmodified	898.54877	0.54876789	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	8						2			2	2	3	3	65.667	65.055	2	0.0020117	58914	160511_QHF_FH_JSI11i_1	93.262	46.195			0.94648	0.84209	76.701	8	8	Median	1.0405	0.84209	65.083	2	2	Median	0.74983	0.84266	84.476	2	2	Median	0.99697	0.95603	116.58	2	2	Median	0.90858	0.90655	126.45	2	2	Median	144170000	81900000	62274000	30770000	16637000	14133000	30654000	19117000	11537000	51172000	29234000	21938000	31578000	16913000	14665000	7802	4334	7370	48413;48414;48415;48416;48417;48418;48419;48420;48421;48422	65729;65730;65731;65732;65733;65734;65735;65736;65737;65738	65729			10	
DILLQQQQQLGHGGPEAAPR	0	Unmodified	2155.1134	0.11341363	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.604	52.081	3	9.4513E-07	45010	160511_QHF_FH_JSI11i_2	99.059	85.633			1.1209	1.1148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1209	1.1148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	214340000	91676000	122670000	0	0	0	0	0	0	214340000	91676000	122670000	0	0	0	7803	3283	7371	48423	65739	65739			1	
DILLRPELEELR	0	Unmodified	1494.8406	0.84059282	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	78.29	77.7	2;3	1.5612E-05	68457	160511_QHF_FH_JSI11i_2	86.772	73.026			0.93769	0.97073	6.1795	12	0	Median	1.2033	1.036	3.8988	2	0	Median	0.80456	0.9896	3.3425	2	0	Median	0.94766	0.95063	2.6562	4	0	Median	0.88446	0.97389	8.6343	4	0	Median	3529400000	1858700000	1670700000	431070000	208100000	222960000	677730000	395930000	281800000	1233200000	572200000	661010000	1187400000	682500000	504890000	7804	764	7372	48424;48425;48426;48427;48428;48429;48430;48431;48432;48433;48434;48435	65740;65741;65742;65743;65744;65745;65746;65747;65748;65749;65750;65751;65752;65753;65754;65755;65756;65757;65758;65759;65760	65752			21	
DILLRPELEELRNK	1	Unmodified	1736.9785	0.97848328	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			70.392	68.917	3	0.05512	57704	160511_QHF_FH_JSI10i_3	38.189	30.78			1.3164	1.2758	0.65813	2	0	Median	1.5481	1.2699	NaN	1	0	Median	1.1193	1.2818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68755000	26390000	42365000	22070000	8283100	13787000	46685000	18107000	28578000	0	0	0	0	0	0	7805	764	7373	48436;48437	65761	65761			1	
DILLVDLNSEIDTNQNSLR	0	Unmodified	2171.107	0.10699085	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			100.39	100.37	2	9.5649E-05	91020	160511_QHF_FH_JSI10i_1	97.273	66.401			1.6751	1.9904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6751	1.9904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36608000	14437000	22170000	0	0	0	36608000	14437000	22170000	0	0	0	0	0	0	7806	2137	7374	48438	65762	65762			1	
DILLVNDHLLNFVR	0	Unmodified	1679.9359	0.93589019	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	101.15	101.02	3	2.3813E-10	88729	160511_QHF_FH_JSI11i_2	129.04	100.41			0.93073	0.88	18.578	2	0	Median	0.8726	0.77167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99273	1.0035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	175760000	98408000	77348000	30724000	13746000	16977000	0	0	0	85772000	48905000	36867000	59261000	35757000	23503000	7807	4988	7375	48439;48440;48441	65763	65763			1	
DILNMEK	1	Unmodified	861.4266	0.42660385	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	43.287	42.634	2	0.0067872	37794	160511_QHF_FH_JSI9i_1	90.777	57.038			2.535	2.621	115.57	5	5	Median	12.629	10.506	NaN	1	1	Median	2.2722	2.621	NaN	1	1	Median	2.535	2.5212	NaN	1	1	Median	1.0813	1.1522	144.21	2	2	Median	464210000	195710000	268500000	63209000	9471900	53737000	85004000	33617000	51387000	130500000	53443000	77056000	185500000	99177000	86324000	7808	1372	7376	48442;48443;48444;48445;48446	65764;65765;65766;65767;65768	65768			5	
DILNNFPHSIAR	0	Unmodified	1395.7259	0.72589741	2886	Q5H943	CT83	Kita-kyushu lung cancer antigen 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	63.794	63.651	3	0.00053723	54952	160511_QHF_FH_JSI12i_3	61.03	52.556			0.56033	0.52376	57.963	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38432	0.34764	NaN	1	1	Median	0.81695	0.78911	NaN	1	1	Median	71257000	48191000	23066000	0	0	0	0	0	0	40341000	28480000	11861000	30916000	19711000	11205000	7809	2886	7377	48447;48448;48449	65769;65770;65771	65771			3	
DILPCLDGYLK	1	Unmodified	1305.6639	0.663874	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.733	95.538	2	0.00010353	86518	160511_QHF_FH_JSI10i_1	86.624	75.473			0.86202	1.0366	23.387	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86202	1.0366	NaN	1	0	Median	0.78707	0.73948	NaN	1	0	Median	1.1084	1.1587	NaN	1	0	Median	187580000	94278000	93300000	0	0	0	64799000	31990000	32810000	63581000	40478000	23103000	59198000	21810000	37388000	7810	2094	7378	48450;48451;48452;48453	65772;65773;65774;65775;65776;65777;65778;65779;65780	65778			9	
DILPNLVSLDVSGRK	1	Unmodified	1624.9148	0.91482039	4583	Q9C0D3	ZYG11B	Protein zyg-11 homolog B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	86.434	86.282	3	0.011943	74908	160511_QHF_FH_JSI12i_3	43.69	23.851			0.65756	0.71531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65756	0.71531	NaN	1	1	Median	9073800	4859700	4214100	0	0	0	0	0	0	0	0	0	9073800	4859700	4214100	7811	4583	7379	48454	65781	65781			1	
DILQAVK	1	Unmodified	785.4647	0.46470391	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	45.897	45.22	2	0.0051675	24462	160513_QHF_FH_JSI12Kac_3	77.748	10.755			0.97909	0.91556	119.24	8	8	Median	0.96391	0.79234	150.12	2	2	Median	0.92229	1.0675	161.97	2	2	Median	0.95032	0.93318	163.69	2	2	Median	1.0088	1.0639	150.92	2	2	Median	1463500000	746550000	716930000	277660000	126640000	151020000	363970000	186550000	177430000	382320000	187530000	194800000	439520000	245840000	193680000	7812	4260	7380	48455;48456;48457;48458;48459;48460;48461;48462;48463	65782;65783;65784;65785;65786;65787;65788;65789;65790	65790			9	
DILQDVHDK	1	Unmodified	1081.5404	0.54038805	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.386	34.963	2	0.00085786	29741	160511_QHF_FH_JSI11i_2	84.213	68.551			1.3284	1.3246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3284	1.3246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31646000	14705000	16941000	0	0	0	0	0	0	31646000	14705000	16941000	0	0	0	7813	3862	7381	48464	65791	65791			1	
DILQNVFK	1	Unmodified	975.53893	0.53893149	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.64	4	6					2			3	3	3	3	76.299	73.978	2	2.5976E-05	68266	160511_QHF_FH_JSI11i_1	138.62	38.696			0.90921	0.88762	49.49	12	7	Median	1.0195	0.84713	47.199	3	2	Median	0.622	0.74839	35.747	3	2	Plateau	0.97234	0.93005	77.283	3	2	Median	1.1099	1.2374	46.369	3	1	Plateau	1242300000	610610000	631710000	300090000	148030000	152060000	231390000	137960000	93429000	479150000	220650000	258510000	231690000	103980000	127710000	7814	1579	7382	48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476	65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802;65803;65804;65805;65806;65807;65808;65809;65810;65811	65794			20	
DILQNVFKLEK	2	Unmodified	1345.7606	0.76055158	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	85.239	85.067	3	0.0020033	73893	160511_QHF_FH_JSI12i_3	62.408	53.895			2.9035	3.0831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9035	3.0831	NaN	1	1	Median	12841000	3338100	9502800	0	0	0	0	0	0	0	0	0	12841000	3338100	9502800	7815	1579	7383	48477	65812	65812			1	
DILSFDK	1	Unmodified	836.42798	0.42798405	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	57.363	56.793	2	0.01483	51514	160511_QHF_FH_JSI12i_1	65.252	22.252			1.9728	1.9948	112.1	6	6	Median	2.7583	2.206	NaN	1	1	Median	0.5895	0.67028	184.15	2	2	Median	1.3484	1.3051	128.95	2	2	Median	1.7966	1.8039	NaN	1	1	Median	175850000	78382000	97472000	24895000	9943400	14951000	48987000	25501000	23487000	77008000	33058000	43950000	24964000	9879800	15084000	7816	2501	7384	48478;48479;48480;48481;48482;48483;48484	65813;65814;65815;65816;65817;65818;65819	65815			7	
DILSFDKIK	2	Acetyl (K)	1119.6176	0.61757574	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0.707						1	2	1			1	1	2	82.722	72.765	2	0.0019069	37935	160513_QHF_FH_JSI12Kac_4	87.308	37.89			0.035264	0.042013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.035264	0.042013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16154000	16036000	117920	0	0	0	7656900	7539000	117920	616750	616750	0	7880600	7880600	0	7817	2501	7385	48485;48486;48487;48488	65820;65821;65822;65823	65822	2503		4	
DILVATDVAGR	0	Unmodified	1128.6139	0.61388734	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	3	2	2	58.213	56.58	2	3.9621E-06	51236	160511_QHF_FH_JSI12i_1	116.52	75.636			2.6783	3.1927	132.44	9	9	Median	1.1136	0.92549	198.88	2	2	Median	2.6783	3.1927	140.57	3	3	Median	1.1823	1.1632	155.35	2	2	Median	0.9325	0.97164	180.05	2	2	Median	809040000	436990000	372040000	178790000	88480000	90305000	226020000	132960000	93060000	239030000	120800000	118230000	165190000	94743000	70449000	7818	4449	7386	48489;48490;48491;48492;48493;48494;48495;48496;48497	65824;65825;65826;65827;65828;65829;65830;65831;65832	65826			9	
DILVEVNHPFIVK	1	Unmodified	1521.8555	0.8555146	1755	P51812;Q9UK32	RPS6KA3;RPS6KA6	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	81.208	80.35	3	9.9971E-05	70917	160511_QHF_FH_JSI9i_2	91.961	64.992			0.51098	0.55137	54.927	5	5	Median	0.84842	0.73793	NaN	1	1	Median	0.39661	0.47134	NaN	1	1	Median	0.51098	0.50445	NaN	1	1	Median	0.91499	0.99397	83.341	2	2	Median	103280000	58613000	44669000	13658000	8037900	5619900	17967000	13047000	4919800	26497000	17751000	8745800	45161000	19777000	25384000	7819	1755	7387	48498;48499;48500;48501;48502	65833;65834;65835;65836;65837	65835			5	
DILVLPLDLTDTGSHEAATK	1	Unmodified	2108.1001	0.10011456	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	98.908	98.765	3	2.2707E-06	89567	160511_QHF_FH_JSI11i_1	83.776	59.238			0.68275	0.70268	14.072	4	2	Median	0.88495	0.70865	NaN	1	0	Median	0.6342	0.74684	NaN	1	1	Median	0.73502	0.69675	NaN	1	0	Median	0.53291	0.5446	NaN	1	1	Median	253690000	151840000	101850000	26361000	12320000	14041000	89451000	56655000	32796000	72131000	43266000	28865000	65747000	39598000	26149000	7820	5565	7388	48503;48504;48505;48506;48507	65838;65839;65840;65841;65842;65843;65844;65845;65846;65847;65848	65838			11	
DILVTEK	1	Unmodified	816.45928	0.45928418	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				33.519	32.264	2	0.030259	28227	160511_QHF_FH_JSI9i_1	54.157	7.7314			1.4969	1.2109	NaN	1	1	Median	1.4969	1.2109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42015000	14339000	27676000	42015000	14339000	27676000	0	0	0	0	0	0	0	0	0	7821	265	7389	48508	65849	65849			1	
DILWDVK	1	Unmodified	887.47527	0.4752686	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	66.644	66.312	2	0.009972	57434	160511_QHF_FH_JSI11i_2	67.032	31.152			0.52059	0.55351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52059	0.55351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7369500	5508000	1861500	0	0	0	7369500	5508000	1861500	0	0	0	0	0	0	7822	2610	7390	48509;48510;48511;48512	65850;65851;65852;65853	65853			4	
DILYVFQGIDGK	1	Unmodified	1366.7133	0.71326704	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			100.36	100.35	2	0.00061947	90957	160511_QHF_FH_JSI10i_1	82.261	55.746			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8571300	8571300	0	0	0	0	8571300	8571300	0	0	0	0	0	0	0	7823	4018	7391	48513	65854	65854			1	
DIMAEIYK	1	Unmodified	981.48412	0.48411873	879	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.372	64.757	2	0.0018444	58757	160511_QHF_FH_JSI12i_1	84.568	48.382			0.72736	0.80044	38.437	4	1	Median	0.48436	0.39931	NaN	1	1	Median	0.6278	0.7408	NaN	1	0	Median	0.95597	0.92914	NaN	1	0	Median	0.8427	0.86488	NaN	1	0	Median	408980000	214690000	194290000	99891000	44557000	55334000	109560000	64549000	45008000	98951000	59187000	39764000	100590000	46400000	54185000	7824	879	7392	48514;48515;48516;48517	65855;65856;65857;65858;65859;65860;65861	65857			7	
DIMDAQRR	0	Unmodified	1003.4869	0.48691269	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		13.786	13.786	2	0.028065	11138	160511_QHF_FH_JSI11i_3	48.787	19.889			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7825	899	7393	48518	65862	65862			1	
DIMEDAIDNRLDSK	1	Unmodified	1633.7618	0.76175015	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	63.676	62.374	3	0.014475	53588	160511_QHF_FH_JSI12i_2	40.025	26.888			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7826	104	7394	48519	65863	65863			1	
DIMEETEEK	1	Unmodified	1122.4751	0.47507018	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.629	30.061	2	0.045356	27008	160511_QHF_FH_JSI12i_1	45.161	35.947			0.48309	0.49289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48309	0.49289	NaN	1	1	Median	32036000	24235000	7800500	0	0	0	0	0	0	0	0	0	32036000	24235000	7800500	7827	557	7395	48520	65864	65864			1	
DIMIQFK	1	Unmodified	893.46807	0.46807473	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1				3	1	1	65.31	64.864	2	0.012077	58760	160511_QHF_FH_JSI10i_1	75.311	30.7			0.10166	0.10109	169.18	4	4	Median	NaN	NaN	NaN	0	0	Median	0.49574	0.54214	238.8	2	2	Median	0.10591	0.10201	NaN	1	1	Median	0.097579	0.096579	NaN	1	1	Median	41030000	27440000	13589000	0	0	0	23438000	12686000	10752000	6993800	5259600	1734200	10597000	9494400	1103000	7828	2457	7396	48521;48522;48523;48524;48525	65865;65866;65867;65868;65869	65869			5	
DIMLATGK	1	Unmodified	847.44734	0.44733929	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.93	7	3				3	3			1	5	6	4	44.391	40.33	2	0.0013538	35917	160511_QHF_FH_JSI9i_1	106.04	64.54			0.65074	0.73649	183.31	16	16	Median	4.3252	3.5192	NaN	1	1	Median	0.65045	0.76833	170.63	5	5	Median	0.24856	0.24712	212.21	6	6	Median	0.74353	0.80561	205.67	4	4	Median	4193700000	2430700000	1763000000	431570000	96921000	334650000	1397800000	933690000	464110000	1492100000	900810000	591340000	872190000	499270000	372920000	7829	1650	7397	48526;48527;48528;48529;48530;48531;48532;48533;48534;48535;48536;48537;48538;48539;48540;48541	65870;65871;65872;65873;65874;65875;65876;65877;65878;65879;65880;65881;65882;65883;65884;65885;65886;65887	65880			18	
DIMLATGK	1	Oxidation (M)	863.44225	0.44225391	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				41.925	40.711	2	0.038927	36064	160511_QHF_FH_JSI9i_1	65.246	23.944			0.43145	0.3497	NaN	1	1	Median	0.43145	0.3497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48894000	32859000	16035000	48894000	32859000	16035000	0	0	0	0	0	0	0	0	0	7830	1650	7397	48542	65888	65888		1312	1	
DIMLATGKLSPDAIPGK	2	Acetyl (K);Oxidation (M)	1783.939	0.93898623	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	1	1				By MS/MS	13	0						2							2	82.309	74.033	3	0.0051819	36390	160513_QHF_FH_JSI12Kac_3	52.862	34.498			9.1066	9.8287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.1066	9.8287	NaN	1	1	Median	5576300	3041800	2534500	0	0	0	0	0	0	0	0	0	5576300	3041800	2534500	7831	1650	7398	48543;48544	65889;65890	65889	1662	1312	2	
DIMQALLVRPLGK	1	Unmodified	1452.8487	0.84865508	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	92.235	91.778	3	7.5791E-07	81766	160511_QHF_FH_JSI11i_3	120.96	69.119			0.65353	0.61987	52.221	7	7	Median	0.88003	0.73637	61.455	2	2	Median	0.39264	0.46504	NaN	1	1	Median	1.0439	0.9712	66.981	2	2	Median	0.94937	0.95122	60.562	2	2	Median	251620000	129920000	121700000	29522000	15314000	14208000	19208000	12727000	6481600	97045000	43607000	53439000	105840000	58269000	47574000	7832	2682	7399	48545;48546;48547;48548;48549;48550;48551	65891;65892;65893;65894;65895;65896;65897	65892			7	
DIMSIYK	1	Unmodified	868.43644	0.43644025	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		55.953	55.539	2	0.019031	50359	160511_QHF_FH_JSI11i_1	58.981	33.983			0.59961	0.57198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59961	0.57198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38790000	21933000	16856000	0	0	0	0	0	0	38790000	21933000	16856000	0	0	0	7833	4775	7400	48552	65898	65898			1	
DIMTPLVALLK	1	Unmodified	1212.7152	0.71518129	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	102.67	102.56	2	1.9839E-09	88452	160511_QHF_FH_JSI12i_2	155.07	130.91			0.88465	0.98837	16.4	5	0	Median	1.092	0.98729	NaN	1	0	Median	0.70696	0.82921	25.766	2	0	Median	1.0002	1.0152	NaN	1	0	Median	0.88465	0.98837	NaN	1	0	Median	290960000	145770000	145190000	47309000	21130000	26179000	61195000	29898000	31298000	59206000	29294000	29912000	123250000	65443000	57805000	7834	3274	7401	48553;48554;48555;48556;48557	65899;65900;65901;65902;65903;65904;65905	65899			7	
DIMTQQLNSK	1	Unmodified	1176.5809	0.58087266	3015	Q66GS9	CEP135	Centrosomal protein of 135 kDa	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.554	57.896	2	0.029106	52647	160511_QHF_FH_JSI12i_1	40.002	4.6458			1.1602	1.2086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1602	1.2086	NaN	1	0	Median	38670000	19547000	19123000	0	0	0	0	0	0	0	0	0	38670000	19547000	19123000	7835	3015	7402	48558	65906	65906			1	
DIMVHFK	1	Unmodified	888.45276	0.45275902	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.42		8	6						1	3	3	4	5	47.047	46.225	3	0.0049908	39483	160511_QHF_FH_JSI12i_2	59.205	48.332			0.68724	0.6845	70.792	14	14	Median	0.72119	0.61019	78.891	3	3	Median	0.57347	0.67248	83.053	3	3	Median	0.9989	1.0139	81.096	4	4	Median	1.0019	1.0588	79.27	4	4	Median	686670000	321020000	365650000	100390000	44579000	55807000	145260000	72792000	72464000	282730000	130130000	152600000	158300000	73515000	84783000	7836	2456	7403	48559;48560;48561;48562;48563;48564;48565;48566;48567;48568;48569;48570;48571;48572;48573	65907;65908;65909;65910;65911;65912;65913;65914;65915;65916;65917;65918;65919;65920;65921;65922;65923;65924;65925;65926;65927;65928	65909			22	
DINAVAASLR	0	Unmodified	1028.5615	0.56145784	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2				2	3	3	61.474	57.444	2	0.00045542	52590	160511_QHF_FH_JSI12i_1	88.496	48.392			3.8225	4.167	193.66	6	6	Median	NaN	NaN	NaN	0	0	Median	3.201	3.7269	NaN	1	1	Median	5.7196	5.3871	210.16	3	3	Median	0.67765	0.69471	269.13	2	2	Median	230360000	92344000	138020000	0	0	0	50489000	17259000	33229000	68974000	17220000	51754000	110900000	57865000	53032000	7837	3218	7404	48574;48575;48576;48577;48578;48579;48580;48581	65929;65930;65931;65932;65933;65934;65935;65936	65931			8	
DINAVAASLRK	1	Unmodified	1156.6564	0.65642086	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.42	3.86	6	11	11					3		5	10	10	6	51.591	49.807	2;3	3.1579E-06	41416	160511_QHF_FH_JSI10i_3	121.36	41.886			1.5206	1.497	301.4	26	26	Median	0.24375	0.20124	246.14	5	5	Median	0.74844	0.88176	300.53	8	8	Median	1.5206	1.497	330.98	8	8	Median	7.3175	8.054	373.43	5	5	Median	3731600000	1687200000	2044400000	387180000	197840000	189340000	720980000	374140000	346840000	1579800000	590960000	988880000	1043500000	524210000	519340000	7838	3218	7405	48582;48583;48584;48585;48586;48587;48588;48589;48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601;48602;48603;48604;48605;48606;48607;48608;48609;48610;48611;48612	65937;65938;65939;65940;65941;65942;65943;65944;65945;65946;65947;65948;65949;65950;65951;65952;65953;65954;65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965;65966;65967;65968;65969	65945			33	
DINAVLIDMER	0	Unmodified	1287.6493	0.64928657	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	86.759	86.104	2	0.00063456	76578	160511_QHF_FH_JSI9i_1	83.397	61.311			2.6126	2.3962	29.253	2	2	Median	2.3616	1.9485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8902	2.9469	NaN	1	1	Median	50878000	17003000	33875000	23996000	7021300	16974000	0	0	0	0	0	0	26882000	9982100	16900000	7839	1857	7406	48613;48614	65970;65971	65971			2	
DINAYNCEEPTEK	1	Unmodified	1581.6617	0.66170175	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.48	9				5	1				2	4	4	5	36.863	32.715	2	1.6663E-24	29425	160511_QHF_FH_JSI11i_1	229.16	208.95			0.51752	0.54376	92.211	14	14	Median	1.1987	0.99644	148.1	2	2	Median	0.87141	0.9805	103.43	4	4	Median	0.4568	0.44088	97.294	4	4	Median	0.92005	0.98134	82.103	4	4	Median	2520500000	1167800000	1352700000	365940000	133650000	232290000	807100000	352560000	454530000	771610000	405910000	365700000	575850000	275630000	300220000	7840	1333	7407	48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626;48627;48628;48629	65972;65973;65974;65975;65976;65977;65978;65979;65980;65981;65982;65983;65984;65985;65986	65972			15	
DINELNLPK	1	Unmodified	1054.5659	0.56587452	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	5.92	6				1	5				2	3	3	4	62.492	57.8	2	1.414E-06	51155	160511_QHF_FH_JSI9i_1	143.7	84.888			2.7409	2.94	184.38	11	9	Median	0.95742	0.78573	169.82	2	2	Median	2.6655	3.165	189.04	3	3	Median	6.2628	5.9908	146.97	2	1	Median	6.0984	6.5226	232.48	4	3	Median	2693000000	1149300000	1543700000	1172500000	601480000	570980000	461790000	232320000	229470000	327170000	16655000	310520000	731580000	298870000	432720000	7841	1935	7408	48630;48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641	65987;65988;65989;65990;65991;65992;65993;65994;65995;65996;65997;65998;65999;66000	65996			14	
DINESDEVEVYSR	0	Unmodified	1553.6845	0.68454569	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	45.99	45.456	2	2.4954E-09	40338	160511_QHF_FH_JSI9i_1	106.01	83.09			1.0767	1.1498	22.041	4	3	Median	NaN	NaN	NaN	0	0	Median	0.93991	1.0983	NaN	1	0	Median	1.2333	1.2037	NaN	1	1	Median	1.1144	1.1843	37.505	2	2	Median	231720000	107130000	124590000	0	0	0	51784000	30954000	20830000	57934000	22790000	35144000	122000000	53387000	68616000	7842	2248	7409	48642;48643;48644;48645;48646	66001;66002;66003;66004;66005	66005			5	
DINLASFIEQVAVSMT	0	Unmodified	1736.8655	0.86548694	1955	P61457	PCBD1	Pterin-4-alpha-carbinolamine dehydratase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	105.72	105.64	2	0.0026727	52936	160513_QHF_FH_JSI12Kac_6	96.745	73.519			2.1179	2.0884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1179	2.0884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3082100	1110400	1971700	0	0	0	0	0	0	3082100	1110400	1971700	0	0	0	7843	1955	7410	48647;48648	66006;66007	66007			2	
DINLDVNR	0	Unmodified	957.48796	0.48795855	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	3	2	2	45.123	40.168	2	9.602E-05	36540	160511_QHF_FH_JSI11i_1	130.27	21.811			0.96331	1.0356	31.355	8	2	Median	1.4721	1.198	NaN	1	0	Median	0.88201	1.0491	48.614	3	2	Median	1.0801	1.0644	5.7022	2	0	Median	0.74643	0.80003	24.767	2	0	Median	1536300000	859930000	676370000	303480000	151930000	151540000	445160000	268670000	176490000	422010000	228090000	193920000	365660000	211230000	154420000	7844	1283	7411	48649;48650;48651;48652;48653;48654;48655;48656	66008;66009;66010;66011;66012;66013;66014;66015;66016;66017;66018;66019;66020;66021	66009			14	
DINLQDEDWNEFNDINK	1	Unmodified	2120.9287	0.92869214	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	85.544	85.171	2;3	2.0444E-73	75703	160511_QHF_FH_JSI9i_1	200.44	184.31			0.97994	1.0442	25.48	4	0	Median	NaN	NaN	NaN	0	0	Median	0.96505	1.1217	NaN	1	0	Median	0.99505	0.97218	NaN	1	0	Median	1.1703	1.2587	38.687	2	0	Median	184960000	86433000	98526000	0	0	0	49591000	24905000	24686000	54979000	24764000	30215000	80389000	36765000	43625000	7845	3101	7412	48657;48658;48659;48660;48661	66022;66023;66024;66025;66026;66027;66028;66029;66030;66031;66032;66033	66033			12	
DINNIVK	1	Unmodified	814.45487	0.45486751	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.343	34.756	2	0.0091276	31478	160511_QHF_FH_JSI12i_1	84.244	31.561			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36013000	36013000	0	0	0	0	0	0	0	0	0	0	36013000	36013000	0	7846	4814	7413	48662	66034	66034			1	
DINQEVYNFLATAGAK	1	Unmodified	1752.8683	0.86826413	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	101.68	101.58	2;3	4.3824E-137	92147	160511_QHF_FH_JSI12i_1	289.38	255.51			0.96265	0.91994	14.316	8	0	Median	1.1777	0.97688	22.09	2	0	Median	0.8105	0.94766	25.924	2	0	Median	1.0188	1.001	11.135	2	0	Median	0.85295	0.89467	3.1395	2	0	Median	1848700000	911600000	937070000	311690000	141780000	169910000	502120000	260140000	241980000	487380000	230910000	256460000	547480000	278760000	268720000	7847	4315	7414	48663;48664;48665;48666;48667;48668;48669;48670;48671	66035;66036;66037;66038;66039;66040;66041;66042;66043;66044;66045;66046;66047;66048	66039			14	
DINTDFLLVVLR	0	Unmodified	1416.7977	0.79766537	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	7.06	1	4							4	2	2	3	2	100.84	97.048	2	3.0753E-76	51268	160513_QHF_FH_JSI9Kac_6	243.53	182.62			0.86259	0.93906	47.2	9	2	Median	0.81987	0.69709	5.8559	2	0	Median	0.63425	0.75587	17.95	2	1	Median	0.94931	0.93906	68.889	3	1	Plateau	0.87933	0.95792	0.88923	2	0	Median	1572200000	868000000	704180000	365860000	207190000	158670000	314090000	195220000	118870000	595440000	322580000	272870000	296780000	143010000	153770000	7848	2265	7415	48672;48673;48674;48675;48676;48677;48678;48679;48680	66049;66050;66051;66052;66053;66054;66055;66056;66057;66058;66059;66060;66061;66062	66060			14	
DINTFLGTPVQK	1	Unmodified	1331.7085	0.70851601	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		71.514	71.166	2	1.5489E-05	64757	160511_QHF_FH_JSI11i_1	117.25	93.897			0.89715	0.87123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89715	0.87123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74197000	35877000	38320000	0	0	0	0	0	0	74197000	35877000	38320000	0	0	0	7849	1576	7416	48681;48682;48683	66063;66064;66065	66063			3	
DINTFVGTPVEK	1	Unmodified	1318.6769	0.67688153	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	4.47	5					1				2		2	2	63.899	61.678	2	1.2487E-05	55823	160511_QHF_FH_JSI11i_1	126.67	96.101			0.96279	0.86798	114	6	6	Median	0.99642	0.81087	104.12	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53522	0.5199	197.18	2	2	Median	0.91435	0.94632	106.72	2	2	Median	381000000	185150000	195850000	144000000	76152000	67852000	0	0	0	107270000	40174000	67097000	129730000	68827000	60900000	7850	1576	7417	48684;48685;48686;48687;48688;48689	66066;66067;66068;66069;66070;66071	66066			6	
DINVSVGSQQPDTK	1	Unmodified	1486.7264	0.72635092	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.822	38.217	2	0.0010433	34672	160511_QHF_FH_JSI12i_1	81.92	66.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6781200	0	6781200	0	0	0	0	0	0	0	0	0	6781200	0	6781200	7851	1718	7418	48690	66072	66072			1	
DINWDSSQWQPLIQDR	0	Unmodified	1999.9388	0.93880331	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	93.083	92.761	2	4.3352E-08	84305	160511_QHF_FH_JSI12i_1	173.68	153.21			1.0776	0.96619	25.189	6	5	Median	1.1003	0.92234	NaN	1	1	Median	1.0757	1.2254	37.814	2	2	Median	1.0554	0.99535	NaN	1	0	Median	1.0313	1.0461	33.044	2	2	Median	146800000	72732000	74066000	7460700	4585700	2875000	60538000	27935000	32604000	23726000	12745000	10981000	55074000	27467000	27606000	7852	3904	7419	48691;48692;48693;48694;48695;48696	66073;66074;66075;66076;66077;66078;66079	66076			7	
DIPAMLPAAR	0	Unmodified	1053.5641	0.56410038	4593	Q9GZM5	YIPF3	Protein YIPF3;Protein YIPF3, 36 kDa form III	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		64.832	64.095	2	0.0075654	56971	160511_QHF_FH_JSI9i_1	52.716	17.421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7853	4593	7420	48697;48698	66080;66081	66081			2	
DIPFSAIYFPCYAHVK	1	Unmodified	1926.9338	0.93384128	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.9		6							1	2	1	3	1	97.539	96.08	3	6.1365E-05	87236	160511_QHF_FH_JSI10i_2	73.156	8.7628			1.1639	1.1517	63.718	7	6	Median	0.99619	0.83798	62.277	2	2	Median	0.87292	1.0687	NaN	1	0	Median	1.1639	1.1517	68.138	3	3	Median	2.3546	2.5622	NaN	1	1	Median	273840000	143760000	130080000	17983000	8406200	9576600	33038000	14939000	18099000	185150000	106790000	78366000	37668000	13630000	24039000	7854	5345	7421	48699;48700;48701;48702;48703;48704;48705	66082;66083;66084;66085;66086;66087;66088;66089	66088			8	
DIPGLTDTTVPR	0	Unmodified	1283.6721	0.67213051	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	5.94	11				2	4	2			4	4	6	5	65.145	60.893	2;3	8.9397E-19	32825	160513_QHF_FH_JSI12Kac_3	148.32	109.3			0.93642	1.0315	60.94	14	5	Median	1.2362	1.0356	19.074	3	1	Plateau	0.92441	1.1105	44.466	3	1	Median	0.88428	0.86157	60.585	5	2	Median	0.90023	0.94992	102.11	3	1	Median	12291000000	6064400000	6226300000	2846100000	1250200000	1595900000	2764500000	1463400000	1301200000	3408900000	1653200000	1755700000	3271300000	1697700000	1573600000	7855	2018	7422	48706;48707;48708;48709;48710;48711;48712;48713;48714;48715;48716;48717;48718;48719;48720;48721;48722;48723;48724	66090;66091;66092;66093;66094;66095;66096;66097;66098;66099;66100;66101;66102;66103;66104;66105;66106;66107;66108;66109;66110;66111;66112;66113;66114;66115;66116;66117;66118;66119;66120;66121;66122;66123	66119			33	
DIPGLTDTTVPRR	0	Unmodified	1439.7732	0.77324153	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.64	2	7	2					1		2	3	5	2	54.831	53.307	2;3	6.0222E-05	46956	160511_QHF_FH_JSI10i_2	62.891	47.135			0.95054	0.97346	26.092	12	0	Median	1.5434	1.3219	2.063	2	0	Median	0.7217	0.88304	26.514	3	0	Median	1.0473	1.0077	10.853	5	0	Median	0.70005	0.70022	9.0105	2	0	Median	589430000	289520000	299910000	129380000	49668000	79713000	203230000	116450000	86780000	182400000	83779000	98621000	74416000	39618000	34798000	7856	2018	7423	48725;48726;48727;48728;48729;48730;48731;48732;48733;48734;48735;48736	66124;66125;66126;66127;66128;66129;66130;66131;66132;66133;66134;66135;66136	66131			13	
DIPGQASLVFDVALLDLHNPK	1	Unmodified	2261.2056	0.20558268	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		102.03	101.92	3	2.7025E-07	89693	160511_QHF_FH_JSI11i_2	101.71	88.477			1.1752	1.1819	14.468	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1752	1.1819	14.468	2	2	Median	NaN	NaN	NaN	0	0	Median	261670000	124810000	136860000	0	0	0	0	0	0	261670000	124810000	136860000	0	0	0	7857	676	7424	48737;48738	66137;66138	66137			2	
DIPIWGTLIQYIRPVFVSR	0	Unmodified	2272.2732	0.27320874	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	100.21	92.104	3	2.0716E-18	55479	160513_QHF_FH_JSI10Kac_6	142.3	127.21			1.0484	1.2424	10.654	3	0	Median	1.4823	1.245	NaN	1	0	Median	1.0484	1.2424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98869	1.0342	NaN	1	0	Median	652070000	281480000	370590000	208460000	78496000	129960000	393910000	177280000	216630000	0	0	0	49706000	25708000	23997000	7858	3649	7425	48739;48740;48741	66139;66140;66141	66141			3	
DIPLGIR	0	Unmodified	782.46504	0.46503826	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0				By MS/MS	1.67	0.471	1	2											3	56.846	55.722	2	0.010513	47509	160511_QHF_FH_JSI12i_2	80.377	23.867			0.64448	0.70411	60.651	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64448	0.70411	60.651	3	3	Median	156240000	81773000	74466000	0	0	0	0	0	0	0	0	0	156240000	81773000	74466000	7859	3686	7426	48742;48743;48744	66142;66143;66144	66142			3	
DIPMPLVSSGVEHGNLR	0	Unmodified	1819.9251	0.9250675	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	74.773	73.96	2;3	4.5615E-05	65190	160511_QHF_FH_JSI9i_2	71.685	60.165			1.4961	1.6707	77.989	5	1	Median	7.8346	6.8392	NaN	1	0	Median	1.4961	1.8134	NaN	1	0	Median	1.2514	1.26	39.897	2	1	Median	0.99946	1.1016	NaN	1	0	Median	267910000	92886000	175020000	45668000	4649900	41018000	57611000	20466000	37145000	105110000	41042000	64067000	59521000	26728000	32793000	7860	4815	7427	48745;48746;48747;48748;48749	66145;66146;66147;66148;66149	66146			4	
DIPNENEAQFQIR	0	Unmodified	1572.7532	0.75323437	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.017	58.371	2	9.4673E-11	52967	160511_QHF_FH_JSI11i_1	152.54	114.82			1.109	1.0946	9.3856	3	0	Plateau	1.5591	1.2864	NaN	1	0	Median	0.95743	1.115	NaN	1	0	Median	1.109	1.0779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1077300000	431430000	645910000	319380000	132900000	186480000	378410000	150770000	227630000	379550000	147760000	231800000	0	0	0	7861	2296	7428	48750;48751;48752	66150;66151;66152;66153;66154;66155	66151			6	
DIPNENELQFQIK	1	Unmodified	1586.794	0.79403655	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				75.717	74.814	2	3.9157E-06	66464	160511_QHF_FH_JSI9i_1	123.63	98.239			1.0439	0.85587	37.713	2	2	Median	1.0439	0.85587	37.713	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214800000	99507000	115290000	214800000	99507000	115290000	0	0	0	0	0	0	0	0	0	7862	2046	7429	48753;48754	66156;66157	66157			2	
DIPNMFMDSAGSVSK	1	Unmodified	1597.7116	0.71162883	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	79.997	79.451	2	0.00055417	70610	160511_QHF_FH_JSI9i_1	89.46	81.39			0.50476	0.46218	75.344	6	6	Median	0.94756	0.77641	58.883	2	2	Median	0.35221	0.41722	NaN	1	1	Median	0.40612	0.39833	NaN	1	1	Median	0.95383	0.98381	128.81	2	2	Median	578360000	328930000	249420000	202820000	95774000	107050000	95307000	70946000	24361000	103940000	67725000	36217000	176290000	94488000	81801000	7863	622	7430	48755;48756;48757;48758;48759;48760	66158;66159;66160;66161;66162;66163	66163			6	
DIPPLEFPK	1	Unmodified	1054.5699	0.56989727	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	79.639	79.002	2	0.01668	70229	160511_QHF_FH_JSI9i_1	43.083	21.783			0.71145	0.57129	23.488	3	1	Median	0.71145	0.57129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59569	0.60251	32.931	2	1	Median	31962000	19241000	12721000	12104000	8029900	4073700	0	0	0	0	0	0	19859000	11211000	8647700	7864	2311	7431	48761;48762;48763	66164;66165	66165			2	
DIPSFER	0	Unmodified	862.41848	0.418482	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	45.35	44.602	2	0.0095616	40320	160511_QHF_FH_JSI11i_1	78.616	24.09			1.0505	1.1065	15.942	5	0	Median	1.5979	1.3529	2.3443	2	0	Median	0.83369	0.98379	NaN	1	0	Median	1.0052	0.98965	NaN	1	0	Median	1.0505	1.1065	NaN	1	0	Median	894730000	435280000	459450000	197710000	90061000	107650000	232050000	121300000	110750000	239420000	114540000	124880000	225550000	109380000	116160000	7865	1627	7432	48764;48765;48766;48767;48768	66166;66167;66168;66169;66170;66171;66172;66173;66174	66167			9	
DIPVLVATDVAAR	0	Unmodified	1338.7507	0.75071518	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	82.049	81.581	2	0.00087398	72513	160511_QHF_FH_JSI9i_1	84.507	65.727			1.06	0.99317	91.656	8	7	Median	1.5062	1.284	130.33	2	1	Median	0.98652	1.1958	135.24	2	2	Median	1.0901	1.0458	116.93	2	2	Median	0.94759	0.98752	94.812	2	2	Median	444210000	228610000	215600000	68464000	31493000	36971000	133230000	72777000	60454000	123540000	61069000	62471000	118980000	63273000	55705000	7866	3377	7433	48769;48770;48771;48772;48773;48774;48775;48776	66175;66176;66177;66178;66179;66180;66181;66182;66183	66182			9	
DIPVTAQPSK	1	Unmodified	1054.5659	0.56587452	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		32.218	31.947	2	0.0021769	28466	160511_QHF_FH_JSI10i_1	74.376	47.246			2.7023	3.1463	195.27	3	3	Median	NaN	NaN	NaN	0	0	Median	2.7023	3.1463	NaN	1	1	Median	0.89466	0.85424	254.81	2	2	Median	NaN	NaN	NaN	0	0	Median	167300000	78837000	88460000	0	0	0	41461000	17869000	23592000	125840000	60969000	64867000	0	0	0	7867	2320	7434	48777;48778;48779	66184;66185;66186	66186			3	
DIPVVHQLLTR	0	Unmodified	1289.7456	0.74557022	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	2	3	5	76.366	75.619	2;3	6.3277E-06	67657	160511_QHF_FH_JSI11i_3	99.5	83.87			0.8527	0.97527	58.925	13	5	Median	1.2251	1.0541	40.798	3	2	Median	0.91151	1.0908	5.6859	2	0	Median	0.80209	0.79356	47.096	3	1	Median	0.8098	0.85559	86.89	5	2	Median	967320000	668320000	299000000	70480000	33688000	36793000	83844000	46939000	36904000	407530000	292020000	115510000	405470000	295670000	109790000	7868	1351	7435	48780;48781;48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792	66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198;66199;66200;66201;66202;66203;66204;66205;66206;66207;66208;66209;66210;66211	66190			25	
DIQDGLLK	1	Unmodified	900.49165	0.49164694	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	47.613	47.078	2	0.012062	42563	160511_QHF_FH_JSI11i_1	62.464	25.37			1.9734	1.9668	5.9055	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.953	1.8863	NaN	1	1	Median	1.994	2.0506	NaN	1	1	Median	74954000	29719000	45236000	0	0	0	0	0	0	40528000	16368000	24160000	34427000	13351000	21076000	7869	1535	7436	48793;48794	66212;66213	66212			2	
DIQDSLTVSNEVQTAK	1	Unmodified	1746.8636	0.86357268	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									3	1		1	57.025	56.124	2;3	6.6349E-10	50722	160511_QHF_FH_JSI10i_1	186.13	149.71			0.71606	0.85234	43.246	5	5	Median	0.80989	0.65852	59.264	3	3	Plateau	0.71606	0.85234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63752	0.66241	NaN	1	1	Median	244720000	145970000	98743000	116190000	57788000	58405000	75175000	52848000	22328000	0	0	0	53349000	35338000	18010000	7870	1606	7437	48795;48796;48797;48798;48799	66214;66215;66216;66217;66218	66215			5	
DIQEDSGMEPR	0	Unmodified	1275.5401	0.54013005	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	2	2	28.912	27.046	2	3.608E-07	24092	160511_QHF_FH_JSI10i_1	120.09	105.42			1.7937	1.696	84.195	7	6	Median	1.0632	0.87099	99.088	2	2	Median	1.9549	2.3338	NaN	1	1	Median	1.0662	1.0235	71.419	2	1	Median	1.2629	1.2952	143.32	2	2	Median	1085200000	525610000	559620000	341810000	157040000	184770000	225380000	99933000	125450000	262200000	148290000	113900000	255850000	120350000	135500000	7871	575	7438	48800;48801;48802;48803;48804;48805;48806	66219;66220;66221;66222;66223;66224;66225	66223			7	
DIQEDSGMEPR	0	Oxidation (M)	1291.535	0.53504468	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						3						2	1	21.634	14.142	2	0.012592	9172	160513_QHF_FH_JSI12Kac_3	65.347	60.563			0.85227	0.82168	51.731	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85227	0.82168	51.731	2	2	Median	NaN	NaN	NaN	0	0	Median	3353600	1681000	1672700	0	0	0	0	0	0	3353600	1681000	1672700	0	0	0	7872	575	7438	48807;48808;48809	66226;66227;66228	66228		217	3	
DIQEDSGMEPRNEEEGNSEEIK	1	Unmodified	2534.0715	0.071469561	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	37.676	36.963	3	1.1336E-13	33336	160511_QHF_FH_JSI11i_1	124.31	121.69			1.1282	1.1128	49.625	6	4	Median	0.89562	0.73468	36.857	2	2	Median	1.1107	1.2969	NaN	1	0	Median	1.4915	1.4473	NaN	1	0	Median	1.477	1.5397	67.568	2	2	Median	451310000	206310000	245000000	87140000	41398000	45742000	97387000	54338000	43049000	76368000	34998000	41370000	190410000	75571000	114840000	7873	575	7439	48810;48811;48812;48813;48814;48815	66229;66230;66231;66232;66233;66234;66235;66236;66237;66238;66239	66231			11	
DIQEESTFSSR	0	Unmodified	1297.5786	0.57862405	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	3	1	34.73	31.331	2	9.7597E-12	17688	160513_QHF_FH_JSI11Kac_3	156.48	125.41			1.1184	1.1624	18.081	6	1	Median	1.6238	1.3212	NaN	1	0	Median	0.83587	0.98923	24.805	2	0	Median	1.2599	1.2364	16.395	2	1	Median	1.1043	1.1462	NaN	1	0	Median	2653300000	1360600000	1292700000	625030000	249680000	375350000	778620000	441110000	337510000	708180000	374360000	333820000	541490000	295440000	246050000	7874	1544	7440	48816;48817;48818;48819;48820;48821;48822	66240;66241;66242;66243;66244;66245;66246;66247;66248	66244			9	
DIQENDEEAVQVK	1	Unmodified	1515.7053	0.70528113	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	8				4					2	3	3	4	37.541	34.679	2	4.387E-06	31224	160511_QHF_FH_JSI11i_1	175.86	140.35			1.3252	1.5	81.76	11	10	Median	1.5381	1.2562	124.23	2	2	Median	1.3252	1.5	99.479	3	3	Median	1.2952	1.245	87.271	2	2	Median	1.2868	1.4008	81.36	4	3	Median	931310000	479630000	451680000	158550000	62881000	95672000	253150000	151620000	101520000	320360000	159530000	160830000	199250000	105590000	93653000	7875	109	7441	48823;48824;48825;48826;48827;48828;48829;48830;48831;48832;48833;48834	66249;66250;66251;66252;66253;66254;66255;66256;66257;66258;66259;66260	66249			12	
DIQGLPR	0	Unmodified	797.43955	0.43955179	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	34.361	33.754	2	0.01141	30593	160511_QHF_FH_JSI12i_1	77.748	19.088			0.4768	0.49844	116.11	7	7	Median	1.2077	0.99014	207.21	2	2	Median	0.96401	1.1408	117.1	2	2	Median	1.0374	1.0167	111.03	2	2	Median	0.31864	0.32571	NaN	1	1	Median	580770000	308670000	272100000	152970000	79131000	73836000	181200000	101910000	79295000	191740000	94476000	97264000	54857000	33157000	21700000	7876	5163	7442	48835;48836;48837;48838;48839;48840;48841	66261;66262;66263;66264;66265;66266;66267	66263			7	
DIQGPGNPQCFSLR	0	Unmodified	1587.7464	0.74637486	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	59.23	58.688	2	0.0027605	53246	160511_QHF_FH_JSI11i_1	68.44	43.055			0.45233	0.4521	9.5737	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50731	0.48377	NaN	1	1	Median	0.4033	0.42251	NaN	1	1	Median	83745000	53558000	30187000	0	0	0	0	0	0	37959000	23695000	14264000	45786000	29863000	15922000	7877	648	7443	48842;48843	66268;66269	66268			2	
DIQGVLSDMEWLGAGYLR	0	Oxidation (M)	2037.983	0.98297631	5827				yes	yes	0	0	1	0	By MS/MS				16	0									1	1				83.573	74.955	2	0.016116	41054	160513_QHF_FH_JSI9Kac_6	62.338	23.159	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63618000	63618000	0	63618000	63618000	0	0	0	0	0	0	0	0	0	0	7878	5827	7444	48844	66270	66270		2763	1	
DIQMPDGIRR	0	Unmodified	1199.6081	0.60809046	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		41.982	41.155	3	0.0071564	36298	160511_QHF_FH_JSI10i_2	39.917	15.574			1.0714	1.1413	12.067	3	0	Median	1.3457	1.2058	NaN	1	0	Median	0.77353	0.95706	NaN	1	0	Median	1.0714	1.1413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134520000	69476000	65049000	48099000	14676000	33423000	47755000	30427000	17327000	38671000	24373000	14299000	0	0	0	7879	2517	7445	48845;48846;48847	66271;66272	66272			1	
DIQNMNFLLK	1	Unmodified	1234.638	0.63799361	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	84.457	83.996	2	1.3036E-06	76107	160511_QHF_FH_JSI10i_1	128.69	115.65			1.0645	0.94107	134.35	8	8	Median	1.1262	0.90807	156.5	2	2	Median	0.89345	1.046	179.22	2	2	Median	0.9653	0.94668	208.77	2	2	Median	0.98178	1.0067	160.98	2	2	Median	603480000	302220000	301260000	110100000	49067000	61031000	180730000	99553000	81178000	175130000	88611000	86515000	137520000	64992000	72531000	7880	3328	7446	48848;48849;48850;48851;48852;48853;48854;48855	66273;66274;66275;66276;66277;66278;66279;66280	66277			8	
DIQNTQCLLNVEHLSAGCPHVTLQFADSK	1	Unmodified	3294.5761	0.57614499	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.587	89.499	4	0.010522	77620	160511_QHF_FH_JSI12i_3	25.955	15.717			1.5754	1.5876	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5754	1.5876	NaN	1	0	Median	36342000	16255000	20087000	0	0	0	0	0	0	0	0	0	36342000	16255000	20087000	7881	3213	7447	48856	66281;66282	66281			2	
DIQQSLADVSK	1	Unmodified	1202.6143	0.61428128	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		48.904	48.489	2	0.00013513	43884	160511_QHF_FH_JSI11i_1	95.483	36.887			0.4346	0.41658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4346	0.41658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47633000	29902000	17731000	0	0	0	0	0	0	47633000	29902000	17731000	0	0	0	7882	433	7448	48857;48858	66283;66284	66283			2	
DIQQTLTQNMER	0	Unmodified	1475.7038	0.70384134	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.22	53.557	2	6.4605E-65	48657	160511_QHF_FH_JSI12i_1	232.84	199.58			1.1633	0.97367	4.1968	4	0	Linear	1.1422	0.94654	NaN	1	0	Median	0.84943	0.99741	NaN	1	0	Median	0.98034	0.9505	NaN	1	0	Median	0.98849	1.0337	NaN	1	0	Median	648240000	348670000	299570000	191190000	92578000	98613000	146380000	73684000	72693000	146980000	84220000	62765000	163680000	98188000	65496000	7883	4831	7449	48859;48860;48861;48862	66285;66286;66287;66288;66289;66290;66291;66292;66293	66288			9	
DIQSLPQK	1	Unmodified	927.50255	0.50254598	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		36.382	27.446	2	0.0020896	16116	160513_QHF_FH_JSI11Kac_3	75.109	28.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7884	4664	7450	48863	66294	66294			1	
DIQSLPR	0	Unmodified	827.45012	0.45011648	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	31.773	31.066	2	0.0063825	27043	160511_QHF_FH_JSI9i_1	91.906	22.517			0.32021	0.31251	139.39	6	6	Median	1.0928	0.88991	149.39	2	2	Median	0.26636	0.31561	NaN	1	1	Median	0.19672	0.19153	NaN	1	1	Median	0.93051	0.98536	222.8	2	2	Median	352370000	192280000	160090000	127260000	54600000	72663000	62672000	44358000	18315000	52570000	36128000	16442000	109860000	57192000	52669000	7885	4727	7451	48864;48865;48866;48867;48868;48869;48870	66295;66296;66297;66298;66299;66300;66301	66300			7	
DIQTLLSR	0	Unmodified	944.5291	0.52909508	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	3	2	1	61.313	60.571	2	0.0012624	53765	160511_QHF_FH_JSI10i_2	91.853	36.412			1.6129	1.7903	102.28	8	6	Median	1.8217	1.5434	152.65	2	2	Median	1.0459	1.2816	91.973	3	2	Median	3.3382	3.2802	38.357	2	1	Median	0.32941	0.37437	NaN	1	1	Median	388610000	174680000	213930000	65798000	30255000	35543000	131310000	66633000	64673000	126510000	37157000	89353000	64998000	40638000	24360000	7886	1585	7452	48871;48872;48873;48874;48875;48876;48877;48878	66302;66303;66304;66305;66306;66307;66308;66309	66309			7	
DIQTNVYIK	1	Unmodified	1092.5815	0.58152458	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.658	46.162	2	1.6118E-06	42032	160511_QHF_FH_JSI12i_1	143.01	95.943			2.3525	2.2773	119.6	3	3	Median	NaN	NaN	NaN	0	0	Median	3.1181	3.6739	NaN	1	1	Median	2.3525	2.2773	NaN	1	1	Median	0.36296	0.37998	NaN	1	1	Median	410190000	190320000	219880000	0	0	0	142700000	55724000	86980000	104940000	34965000	69973000	162550000	99630000	62923000	7887	1627	7453	48879;48880;48881	66310;66311;66312	66311			3	
DIQYPFLGPVPTR	0	Unmodified	1501.7929	0.79291434	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.4	85.948	2	9.718E-07	76503	160511_QHF_FH_JSI9i_1	128.01	85.272			0.86559	0.89208	4.7425	4	0	Median	1.1156	0.9268	NaN	1	0	Median	0.78883	0.93673	NaN	1	0	Median	0.89644	0.85865	NaN	1	0	Median	0.8358	0.8585	NaN	1	0	Median	174550000	85752000	88797000	36220000	14533000	21687000	43252000	23854000	19398000	47572000	24059000	23512000	47506000	23306000	24200000	7888	2592	7454	48882;48883;48884;48885	66313;66314;66315;66316;66317;66318;66319;66320	66320			8	
DIRDYNDADMAR	0	Unmodified	1453.6256	0.62559102	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	1		By MS/MS	By matching		1	0	2										1	1		32.94	32.65	3	0.059911	29148	160511_QHF_FH_JSI10i_1	48.513	45.739			0.9711	1.0286	6.2715	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90665	1.0753	NaN	1	0	Median	1.0401	0.98401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146250000	78999000	67255000	0	0	0	74259000	47231000	27028000	71994000	31767000	40226000	0	0	0	7889	2568	7455	48886;48887	66321	66321			0	
DIREEAEK	1	Unmodified	988.48254	0.48253882	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	4	2	1	11.768	11.372	2;3	0.0013046	9162	160511_QHF_FH_JSI10i_1	67.897	35.057			0.82127	0.94282	22.47	8	0	Median	1.762	1.473	NaN	1	0	Median	0.70647	0.83332	13.266	4	0	Median	1.0135	0.99928	21.169	2	0	Median	0.96145	1.0089	NaN	1	0	Median	2346800000	1256700000	1090100000	147200000	53912000	93288000	1522200000	869790000	652420000	432950000	218120000	214820000	244430000	114870000	129560000	7890	1266	7456	48888;48889;48890;48891;48892;48893;48894;48895	66322;66323;66324;66325;66326;66327;66328;66329;66330	66326			9	
DIRFELLAR	0	Unmodified	1131.64	0.64004252	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	68.771	68.181	3	5.5082E-07	59073	160511_QHF_FH_JSI12i_3	119.68	90.723			1.0691	1.1105	4.0947	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98031	1.1668	NaN	1	0	Median	1.2011	1.1436	NaN	1	0	Median	1.0691	1.0784	NaN	1	0	Median	117650000	49303000	68348000	0	0	0	18895000	11091000	7804800	42673000	14063000	28610000	56083000	24149000	31934000	7891	1449	7457	48896;48897;48898	66331;66332;66333;66334	66334			4	
DIRMRKMGR	1	Oxidation (M)	1177.6172	0.61721536	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	1	3			By MS/MS		16	0									1			1		92.194	82.822	2	0.028366	46556	160513_QHF_FH_JSI11Kac_6	37.558	9.3843			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7892	2584	7458	48899	66335	66335			1	
DIRPGAAFEPTYIYR	0	Unmodified	1767.8944	0.8944193	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	69.691	69.02	3	3.7757E-05	59663	160511_QHF_FH_JSI12i_3	88.507	73.821			1.0096	1.0787	15.731	6	3	Median	1.2892	1.125	NaN	1	1	Median	0.94266	1.1059	9.4718	2	1	Median	1.2312	1.1642	27.126	2	1	Median	0.79266	0.91375	NaN	1	0	Median	354020000	169220000	184800000	57218000	23759000	33459000	104270000	55806000	48469000	119430000	49673000	69762000	73090000	39979000	33112000	7893	2567	7459	48900;48901;48902;48903;48904;48905	66336;66337;66338;66339;66340;66341;66342;66343;66344;66345	66345			10	
DISAIEEAMSASLQQHK	1	Unmodified	1856.8938	0.89382695	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			94.671	94.41	3	3.673E-11	83672	160511_QHF_FH_JSI10i_2	138.28	117.84			5.8563	5.9744	69.709	2	2	Median	4.2679	3.6494	NaN	1	1	Median	8.0358	9.7806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21816000	2711700	19104000	7078400	1399200	5679200	14738000	1312500	13425000	0	0	0	0	0	0	7894	3962	7460	48906;48907	66346;66347	66347			2	
DISDIEGEK	1	Unmodified	1004.4662	0.46622005	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	34.194	33.164	2	0.0001403	29197	160511_QHF_FH_JSI9i_1	107.69	6.1515			0.43379	0.36226	105.8	3	3	Median	1.0542	0.87835	125.25	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31	0.32235	NaN	1	1	Median	237800000	134380000	103420000	173860000	90675000	83190000	0	0	0	0	0	0	63936000	43707000	20228000	7895	1785	7461	48908;48909;48910	66348;66349;66350	66350			3	
DISEAALK	1	Unmodified	845.44945	0.44944778	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.806	33.512	2	0.0028908	30067	160511_QHF_FH_JSI11i_1	83.753	23.044			0.22426	0.24146	17.633	2	2	Median	NaN	NaN	NaN	0	0	Median	0.17869	0.21315	NaN	1	1	Median	0.28145	0.27352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123040000	95460000	27582000	0	0	0	63891000	49832000	14059000	59151000	45628000	13523000	0	0	0	7896	4064	7462	48911;48912	66351;66352	66351			2	
DISEASVFDAYVLPK	1	Unmodified	1652.8298	0.82975336	2027	P62854	RPS26	40S ribosomal protein S26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.712	8	5	2							3	5	3	4	98.266	98.1	2;3	2.9179E-41	89072	160511_QHF_FH_JSI11i_1	248.41	236.54			0.97193	0.98971	33.926	15	8	Median	1.243	0.98191	30.242	3	1	Plateau	0.82764	0.98971	37.016	5	4	Median	0.88035	0.85895	44.207	3	1	Plateau	0.80587	0.83929	20.693	4	2	Median	6541200000	3112900000	3428200000	1171100000	506760000	664330000	2217500000	1053000000	1164600000	1485600000	656340000	829260000	1667000000	896870000	770100000	7897	2027	7463	48913;48914;48915;48916;48917;48918;48919;48920;48921;48922;48923;48924;48925;48926;48927	66353;66354;66355;66356;66357;66358;66359;66360;66361;66362;66363;66364;66365;66366;66367;66368;66369;66370;66371;66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382;66383;66384;66385;66386;66387	66355			35	
DISEEILNK	1	Unmodified	1059.5448	0.54480473	3057	Q6IMI6	SULT1C3	Sulfotransferase 1C3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	59.345	54.208	2	7.9612E-05	49088	160511_QHF_FH_JSI12i_1	95.531	18.473			0.15828	0.15576	1.7493	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16307	0.15385	NaN	1	1	Median	0.15363	0.1577	NaN	1	0	Median	100860000	81952000	18910000	0	0	0	0	0	0	2623800	2231600	392250	98238000	79720000	18518000	7898	3057	7464	48928;48929	66388;66389	66388			2	
DISENKR	1	Unmodified	860.43519	0.4351947	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	2	0.707	1	2	1							1		2	1	5.2458	5.0965	2	0.00080219	2858	160511_QHF_FH_JSI9i_2	128.48	39.115			1.6917	1.5598	116.89	4	1	Median	4.912	4.1413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60388	0.58654	0.21967	2	0	Median	4.6973	4.7431	NaN	1	1	Median	857870000	258450000	599420000	542710000	104370000	438340000	0	0	0	235200000	138580000	96611000	79967000	15499000	64468000	7899	985	7465	48930;48931;48932;48933	66390;66391	66390			2	
DISFHLQK	1	Unmodified	986.51853	0.5185304	3542	Q8N5C7	DTWD1	DTW domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.231	45.282	3	0.0019377	38893	160511_QHF_FH_JSI11i_2	59.245	34.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7900	3542	7466	48934;48935	66392;66393	66393			2	
DISKWNNR	1	Acetyl (K)	1073.5254	0.52540669	583	O75915	ARL6IP5	PRA1 family protein 3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	45.849	35.593	2	0.00096935	21163	160513_QHF_FH_JSI11Kac_4	106.04	86.338			0.088954	0.090634	16.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10371	0.1018	NaN	1	1	Median	0.076298	0.080693	NaN	1	1	Median	6998900	6052300	946670	0	0	0	0	0	0	5443200	4649000	794170	1555700	1403200	152500	7901	583	7467	48936;48937	66394;66395	66394	301		2	
DISLDSELHDLR	0	Unmodified	1411.6943	0.69432251	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			71.235	60.612	2	0.014783	32458	160513_QHF_FH_JSI10Kac_4	53.327	16.634			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7902	2691	7468	48938	66396	66396			1	
DISLSDYK	1	Unmodified	939.45493	0.45492709	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	5.92	8	3	1		3	7	6	2		4	8	8	10	49.533	43.013	2	2.6925E-07	6796	160513_QHF_FH_JSI9Kac_3	144.38	72.237			0.61737	0.63595	103.91	30	28	Median	0.84054	0.75437	133.49	4	2	Median	0.49216	0.59196	115.27	8	8	Median	0.84142	0.83649	94.493	8	8	Median	0.57806	0.61448	106.92	10	10	Median	65088000000	31838000000	33250000000	12076000000	4153800000	7921900000	20211000000	11103000000	9107300000	17648000000	9116500000	8531400000	15154000000	7464300000	7689600000	7903	2249	7469	48939;48940;48941;48942;48943;48944;48945;48946;48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957;48958;48959;48960;48961;48962;48963;48964;48965;48966;48967;48968	66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407;66408;66409;66410;66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437	66419			41	
DISLSDYKGK	2	Acetyl (K)	1166.5819	0.58191851	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					2	6					4	2	2	63.363	53.915	2;3	4.8265E-12	28133	160513_QHF_FH_JSI12Kac_3	155.84	108			0.76774	0.82683	195.51	8	2	Median	NaN	NaN	NaN	0	0	Median	1.1238	1.3137	248.51	4	1	Median	0.4834	0.47449	28.918	2	0	Median	1.854	1.9512	179.5	2	1	Median	576950000	340470000	236480000	0	0	0	188640000	78110000	110530000	222400000	160380000	62017000	165910000	101970000	63933000	7904	2249	7470	48969;48970;48971;48972;48973;48974;48975;48976	66438;66439;66440;66441;66442;66443;66444;66445;66446;66447	66444	2345		10	
DISMEIDSPENMMR	0	Unmodified	1666.7001	0.70007787	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By matching		By MS/MS		1	0	3									1		2		77.183	76.672	2	0.00045989	69625	160511_QHF_FH_JSI11i_1	95.618	81.955			0.96407	0.9395	12.659	3	1	Plateau	1.0429	0.86135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0539	1.019	11.494	2	1	Median	NaN	NaN	NaN	0	0	Median	96510000	47492000	49017000	23966000	11866000	12100000	0	0	0	72544000	35627000	36917000	0	0	0	7905	2727	7471	48977;48978;48979	66448;66449	66448			1	
DISNTLIMLADK	1	Unmodified	1332.6959	0.69590241	4414	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	93.852	93.503	2	1.1596E-05	84929	160511_QHF_FH_JSI12i_1	126.19	86.149			0.92831	0.9815	33.559	4	4	Median	1.9235	1.547	NaN	1	1	Median	1.0326	1.1828	NaN	1	1	Median	0.83457	0.81449	NaN	1	1	Median	0.70558	0.75296	NaN	1	1	Median	131920000	82084000	49836000	19689000	8403900	11285000	29574000	18167000	11407000	42266000	28233000	14033000	40392000	27280000	13112000	7906	4414	7472	48980;48981;48982;48983	66450;66451;66452;66453	66451			4	
DISPFSYTAPR	0	Unmodified	1252.6088	0.60880197	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	3	1	64.869	62.177	2	2.9021E-09	56830	160511_QHF_FH_JSI12i_1	127.4	108.13			1.1043	1.0763	13.669	5	0	Median	1.1584	0.94852	NaN	1	0	Median	0.96476	1.1199	NaN	1	0	Median	1.0756	1.0469	3.9098	2	0	Median	1.3202	1.3634	NaN	1	0	Median	304050000	152850000	151200000	70055000	32434000	37621000	71017000	40547000	30471000	89275000	43044000	46231000	73703000	36822000	36881000	7907	1136	7473	48984;48985;48986;48987;48988;48989	66454;66455;66456;66457;66458;66459;66460;66461;66462;66463	66457			10	
DISPVLK	1	Unmodified	770.4538	0.45380487	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.73	8	1				2	2			2	4	3	4	43.867	40.374	2	0.0057781	36637	160511_QHF_FH_JSI10i_1	97.071	10.985			1.8887	1.8786	131.02	13	13	Median	1.465	1.2002	124.59	2	2	Median	1.5666	1.8895	158.83	4	4	Median	1.8887	1.8786	134.32	3	3	Median	0.75454	0.82411	158.62	4	4	Median	5722800000	2900700000	2822100000	1405500000	627530000	778000000	1538600000	803840000	734790000	1455900000	814220000	641690000	1322800000	655150000	667630000	7908	877	7474	48990;48991;48992;48993;48994;48995;48996;48997;48998;48999;49000;49001;49002	66464;66465;66466;66467;66468;66469;66470;66471;66472;66473;66474;66475;66476;66477;66478;66479;66480;66481;66482;66483;66484	66475			21	
DISQAYYTVYK	1	Unmodified	1349.6503	0.65033243	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.2	4.56	1					4	1				4	1	1	69.009	60.935	2	2.1111E-05	54964	160511_QHF_FH_JSI10i_1	133.23	72.317			1.2983	1.4143	108.4	6	4	Median	NaN	NaN	NaN	0	0	Median	1.0958	1.2631	138.65	4	3	Median	1.6576	1.782	NaN	1	1	Median	1.0169	1.1224	NaN	1	0	Median	394090000	58740000	335350000	0	0	0	391140000	57583000	333560000	676200	237750	438450	2270400	919410	1351000	7909	1018	7475	49003;49004;49005;49006;49007;49008	66485;66486;66487;66488;66489;66490	66487			6	
DISQAYYTVYKK	2	Unmodified	1477.7453	0.74529545	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	6.88	6.29		5						3		2		3	3	56.408	52.507	2;3	6.1745E-05	45072	160511_QHF_FH_JSI12i_2	113.47	71.472			1.8028	1.7852	89.322	7	6	Median	1.805	1.5244	53.406	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92141	0.92176	93.482	2	2	Median	2.9493	3.2867	110.7	3	2	Median	234270000	130400000	103880000	31262000	13801000	17461000	0	0	0	129180000	92397000	36781000	73832000	24198000	49633000	7910	1018	7476	49009;49010;49011;49012;49013;49014;49015;49016	66491;66492;66493;66494;66495;66496;66497;66498	66493			8	
DISQAYYTVYKK	2	Acetyl (K)	1519.7559	0.75586013	1018	P12429	ANXA3	Annexin A3	yes	yes	1	0	0	1				By MS/MS	13	0						2							2	73.914	65.477	2	0.0033443	32760	160513_QHF_FH_JSI12Kac_3	76.143	54.679			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1490700	729170	761540	0	0	0	0	0	0	0	0	0	1490700	729170	761540	7911	1018	7476	49017;49018	66499;66500	66500	833		2	
DISQDSLQDIK	1	Unmodified	1260.6198	0.61976058	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0				By MS/MS	6.5	5.5	1				1								2	50.179	49.513	2	0.0023886	44882	160511_QHF_FH_JSI12i_1	72.582	52.062			0.96494	0.9953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96494	0.9953	NaN	1	1	Median	127140000	64694000	62447000	0	0	0	0	0	0	0	0	0	127140000	64694000	62447000	7912	5641	7477	49019;49020	66501;66502	66501			2	
DISQNKR	1	Unmodified	859.45118	0.45117911	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	1	By MS/MS				2	0		2								2				4.7659	4.3721	2;3	0.017903	2296	160511_QHF_FH_JSI9i_2	37.558	6.269			1.7819	1.529	NaN	1	1	Median	1.7819	1.529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	342830000	138770000	204060000	342830000	138770000	204060000	0	0	0	0	0	0	0	0	0	7913	954;1416	7478	49021;49022	66503;66504	66504			2	
DISSALR	0	Unmodified	760.40792	0.40791731	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	31.75	31.202	2	0.011879	27829	160511_QHF_FH_JSI10i_1	76.035	9.0414			1.4359	1.4138	87.174	5	4	Median	0.38244	0.31162	NaN	1	1	Median	0.87696	1.0329	107.78	2	2	Median	1.4359	1.4138	NaN	1	0	Median	1.8309	1.8817	NaN	1	1	Median	1015200000	516430000	498790000	133160000	81231000	51932000	453620000	236210000	217410000	239490000	116010000	123480000	188950000	82977000	105980000	7914	1029	7479	49023;49024;49025;49026;49027	66505;66506;66507;66508;66509;66510	66509			6	
DISSDAFTALDPLGDK	1	Unmodified	1663.7941	0.79409613	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	3	3	97.219	97.028	2;3	3.9706E-15	88128	160511_QHF_FH_JSI11i_1	161.1	88.038			0.9507	0.94174	31.956	11	7	Median	1.456	1.2021	34.521	2	1	Median	0.70093	0.82015	22.397	3	2	Median	0.95772	0.92005	39.877	3	2	Median	0.924	0.97315	40.851	3	2	Median	253960000	136320000	117640000	44305000	20976000	23329000	100490000	61667000	38819000	49986000	24006000	25980000	59186000	29669000	29517000	7915	2137	7480	49028;49029;49030;49031;49032;49033;49034;49035;49036;49037;49038	66511;66512;66513;66514;66515;66516;66517;66518;66519;66520;66521;66522;66523;66524;66525	66513			14	
DISSIGLK	1	Unmodified	831.47018	0.47018322	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	48.567	47.802	2	0.00079816	43286	160511_QHF_FH_JSI10i_1	91.9	18.861			5.7807	2.7979	41.298	3	3	Plateau	3.3309	2.7503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.7807	5.6714	NaN	1	1	Median	2.6637	2.7979	NaN	1	1	Median	513120000	164940000	348180000	168340000	59721000	108620000	0	0	0	185490000	45758000	139740000	159280000	59461000	99821000	7916	3343	7481	49039;49040;49041;49042;49043	66526;66527;66528;66529;66530	66529			5	
DISSITMFADYRLPQVLAHLGALK	1	Unmodified	2658.4203	0.42034326	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									4	2	1	1		97.696	89.361	3;4	1.6522E-19	50755	160513_QHF_FH_JSI9Kac_6	118.35	97.455			1.4624	1.3511	12.36	4	1	Median	1.5695	1.3511	0.7344	2	1	Median	0.91442	1.0633	NaN	1	0	Median	1.3909	1.3788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	252240000	106330000	145910000	106930000	32351000	74580000	107270000	56099000	51170000	38043000	17883000	20160000	0	0	0	7917	2952	7482	49044;49045;49046;49047	66531;66532;66533	66531			3	
DISSSLNSLADSNAR	0	Unmodified	1548.738	0.73797824	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		61.21	60.574	2	1.7039E-98	54820	160511_QHF_FH_JSI10i_1	265.72	239.68			0.99184	0.98635	15.852	3	0	Plateau	0.97138	0.79354	NaN	1	0	Median	0.93659	1.0803	NaN	1	0	Median	1.0062	0.98635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	393150000	202630000	190530000	137360000	76339000	61025000	116220000	57006000	59215000	139570000	69281000	70288000	0	0	0	7918	606	7483	49048;49049;49050	66534;66535;66536;66537;66538;66539	66537			6	
DISSSLNSLADSNAREFEEESK	1	Unmodified	2427.1038	0.10375597	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	3										2		1	77.116	76.825	3	6.9621E-11	69649	160511_QHF_FH_JSI10i_1	119.01	101.15			1.1175	1.1903	11.066	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.0592	1.2555	7.5374	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0369	1.0613	NaN	1	1	Median	223360000	97299000	126060000	0	0	0	156220000	65536000	90681000	0	0	0	67138000	31763000	35375000	7919	606	7484	49051;49052;49053	66540;66541;66542	66541			3	
DISSTLIALADK	1	Unmodified	1245.6816	0.68163256	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	3	1	2	94.766	94.422	2	2.6747E-07	85533	160511_QHF_FH_JSI10i_1	129.89	92.698			1.1447	1.2105	11.619	4	1	Median	1.6676	1.3878	NaN	1	1	Median	0.97585	1.162	NaN	1	0	Median	1.0848	1.0567	NaN	1	0	Median	1.2079	1.2611	NaN	1	0	Median	132320000	63862000	68461000	22707000	10213000	12494000	36873000	20184000	16689000	34529000	16905000	17625000	38213000	16559000	21653000	7920	2389	7485	49054;49055;49056;49057;49058;49059;49060;49061	66543;66544;66545;66546;66547;66548;66549;66550;66551;66552;66553	66548			11	
DISTLNSGK	1	Unmodified	933.47673	0.47672516	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					2	1	2	30.246	21.917	2	0.001113	13455	160513_QHF_FH_JSI11Kac_3	89.355	42.929			7.4895	8.1256	237.58	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1649	0.15917	NaN	1	1	Median	0.88367	0.95805	302.34	2	2	Median	9301300	4906800	4394500	0	0	0	0	0	0	3127000	2355400	771580	6174400	2551400	3622900	7921	816	7486	49062;49063;49064;49065;49066	66554;66555;66556;66557;66558	66554			5	
DISTLNSGKK	2	Unmodified	1061.5717	0.57168818	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.01	5	9	4				5			6	6	6	5	18.498	16.186	2;3	1.8215E-06	13571	160511_QHF_FH_JSI9i_2	120.12	98.033			3.1824	3.1431	183.8	17	17	Median	3.1253	2.6105	50.658	3	3	Median	8.1968	9.7033	160.76	3	3	Plateau	1.071	1.0515	188.44	6	6	Median	4.0838	4.1216	258.39	5	5	Median	1251600000	463110000	788450000	252770000	103260000	149510000	333970000	144230000	189730000	439580000	127500000	312080000	225240000	88116000	137120000	7922	816	7487	49067;49068;49069;49070;49071;49072;49073;49074;49075;49076;49077;49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089	66559;66560;66561;66562;66563;66564;66565;66566;66567;66568;66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580;66581	66573			23	
DISTNYYASQK	1	Unmodified	1288.5935	0.59354583	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.63	5.85	8	1	3		5	6	4	2	1	6	7	8	9	37.934	31.839	2;3	2.387E-47	6636	160513_QHF_FH_JSI9Kac_3	256.24	233.17			0.81673	0.87336	115.98	26	22	Median	0.73648	0.60548	280.11	3	1	Median	0.66567	0.79675	77.908	7	6	Median	1.2924	1.2779	69.95	7	6	Median	0.90572	0.95733	104.36	9	9	Median	13944000000	6464000000	7479600000	3368200000	1157900000	2210300000	2298200000	1307600000	990600000	4634400000	2085800000	2548600000	3642900000	1912800000	1730200000	7923	1057	7488	49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101;49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119	66582;66583;66584;66585;66586;66587;66588;66589;66590;66591;66592;66593;66594;66595;66596;66597;66598;66599;66600;66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616	66601			35	
DISTNYYASQKK	2	Unmodified	1416.6885	0.68850885	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	5.08	16	8					6			6	7	8	9	28.398	25.966	2;3	9.9525E-06	22986	160511_QHF_FH_JSI10i_1	110.8	87.683			1.0315	1.0597	76.326	30	30	Median	1.3846	1.1491	65.326	6	6	Median	0.89519	1.1248	56.688	7	7	Median	0.8371	0.83042	87.441	8	8	Median	1.4634	1.638	94.796	9	9	Median	2268500000	1101700000	1166800000	345950000	165920000	180040000	616990000	309990000	307000000	681720000	349080000	332650000	623810000	276740000	347060000	7924	1057	7489	49120;49121;49122;49123;49124;49125;49126;49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149	66617;66618;66619;66620;66621;66622;66623;66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636;66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647	66634			31	
DISTTLNADEAVAR	0	Unmodified	1474.7264	0.72635092	3852;723	O95757;Q92598	HSPA4L;HSPH1	Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	3	3	2	57.746	54.218	2	7.3158E-53	48225	160511_QHF_FH_JSI9i_1	224.58	153.2			0.99443	1.0861	30.575	9	5	Median	1.2864	1.0433	NaN	1	0	Median	0.94359	1.0861	38.555	3	2	Median	1.3421	1.3066	38.188	3	3	Median	0.9877	1.0666	25.848	2	0	Median	2539200000	1377000000	1162300000	421870000	214470000	207400000	928570000	602490000	326070000	750540000	341540000	409000000	438250000	218460000	219790000	7925	723;3852	7490	49150;49151;49152;49153;49154;49155;49156;49157;49158	66648;66649;66650;66651;66652;66653;66654;66655;66656;66657;66658;66659;66660	66656			13	
DITEEIMSGAR	0	Unmodified	1220.5707	0.5707019	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	1	3	66.648	64.466	2	3.2849E-19	58498	160511_QHF_FH_JSI12i_1	168.83	135.03			1.0264	1.0327	17.883	5	1	Median	1.2349	1.0162	NaN	1	0	Median	0.90289	1.0736	NaN	1	0	Median	1.0635	1.0327	NaN	1	0	Median	0.81322	0.87594	30.121	2	1	Median	1820300000	843170000	977090000	464990000	204040000	260950000	437900000	239000000	198900000	476980000	211900000	265080000	440390000	188230000	252150000	7926	2217	7491	49159;49160;49161;49162;49163;49164;49165	66661;66662;66663;66664;66665;66666;66667;66668;66669;66670;66671;66672	66664			12	
DITELFSQLHVSSKPEK	2	Unmodified	1957.0157	0.015656649	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	85.17	85.084	4	0.00022351	75843	160511_QHF_FH_JSI11i_3	71.697	60.653			1.8351	1.8364	17.85	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7363	1.6186	NaN	1	1	Median	1.9395	2.0834	NaN	1	1	Median	41754000	14428000	27327000	0	0	0	0	0	0	21662000	9565900	12096000	20092000	4861600	15231000	7927	4975	7492	49166;49167	66673;66674	66673			2	
DITGTLSNPEVFNYGVETHEAYK	1	Unmodified	2583.2129	0.21291249	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	80.625	80.048	2;3	1.203E-33	72708	160511_QHF_FH_JSI10i_1	207.72	195.8			0.94692	0.985	7.6171	8	0	Median	1.0802	0.90753	12.856	2	0	Median	0.78604	0.96124	5.7722	2	0	Median	0.95042	0.94489	4.6069	2	0	Median	0.94692	1.033	3.2732	2	0	Median	1594600000	740690000	853880000	237980000	106040000	131940000	410710000	218590000	192130000	437250000	195760000	241480000	508640000	220310000	288340000	7928	1090	7493	49168;49169;49170;49171;49172;49173;49174;49175;49176	66675;66676;66677;66678;66679;66680;66681;66682;66683;66684;66685;66686;66687;66688;66689;66690;66691;66692;66693;66694	66684			20	
DITIHANPFAQ	0	Unmodified	1225.6091	0.60913632	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.658	68.054	2	0.0061006	62004	160511_QHF_FH_JSI12i_1	54.191	45.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7929	4674	7494	49177	66695	66695			1	
DITLEASR	0	Unmodified	903.46616	0.46616048	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		31.172	30.561	2	0.0039524	27287	160511_QHF_FH_JSI10i_1	77.072	34.071			1.3669	1.1276	39.003	3	2	Plateau	1.3806	1.1276	NaN	1	0	Median	0.63452	0.73998	NaN	1	1	Median	0.52627	0.51733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145630000	68825000	76804000	52671000	18987000	33684000	51541000	27700000	23841000	41417000	22138000	19279000	0	0	0	7930	2052	7495	49178;49179;49180	66696;66697;66698;66699	66697			4	
DITLFHAMDTLHK	1	Unmodified	1540.7708	0.77079869	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	75.263	74.316	3	0.00016687	65115	160511_QHF_FH_JSI11i_2	80.96	61.884			0.63137	0.68621	16.415	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58092	0.61101	NaN	1	1	Median	0.6862	0.77067	NaN	1	1	Median	53093000	33347000	19746000	0	0	0	0	0	0	37727000	24528000	13199000	15366000	8818600	6547000	7931	2389	7496	49181;49182	66700;66701	66701			2	
DITLFHAMDTLQR	0	Unmodified	1559.7766	0.77661235	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								2	2	3	4	83.674	82.885	2;3	2.3707E-06	72958	160511_QHF_FH_JSI11i_2	121.08	94.562			0.90757	1.0392	47.33	11	10	Median	1.6336	1.4275	26.427	2	2	Median	0.6471	0.79283	38.268	2	2	Median	0.90757	0.90414	45.437	3	2	Median	0.99801	1.1067	64.47	4	4	Median	621640000	294620000	327020000	76565000	26487000	50078000	116130000	63187000	52946000	219910000	105960000	113960000	209030000	98990000	110040000	7932	606	7497	49183;49184;49185;49186;49187;49188;49189;49190;49191;49192;49193	66702;66703;66704;66705;66706;66707;66708;66709;66710;66711;66712;66713;66714;66715	66711			14	
DITLFHAMDTLYR	0	Unmodified	1594.7814	0.78136338	4414	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		7								3	2	2		94.398	94.106	2;3	0.0021769	83307	160511_QHF_FH_JSI10i_2	81.431	73.521			1.8334	1.946	67.244	7	6	Median	2.2727	1.946	80.6	3	3	Median	1.3296	1.6364	42.798	2	1	Median	1.7613	1.8079	110.26	2	2	Median	NaN	NaN	NaN	0	0	Median	117230000	42614000	74617000	31263000	10892000	20371000	29690000	10901000	18789000	56279000	20822000	35457000	0	0	0	7933	4414	7498	49194;49195;49196;49197;49198;49199;49200	66716;66717;66718;66719;66720;66721;66722	66721			7	
DITLTNDK	1	Unmodified	918.46583	0.46582612	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				1	2	3	3	30.54	26.899	2	0.0012881	24240	160511_QHF_FH_JSI12i_1	107.66	48.459			3.0788	3.1268	155.87	8	8	Median	0.29423	0.24134	NaN	1	1	Median	3.5406	4.215	NaN	1	1	Median	3.0943	2.9355	166.71	3	3	Median	3.0633	3.3306	189.34	3	3	Median	329670000	149470000	180200000	62011000	46440000	15571000	75209000	24872000	50337000	75336000	15539000	59796000	117110000	62622000	54491000	7934	1400	7499	49201;49202;49203;49204;49205;49206;49207;49208;49209	66723;66724;66725;66726;66727;66728;66729;66730;66731	66724			9	
DITLTNDKPATAIGVIGNFTDAER	1	Unmodified	2531.2867	0.28674613	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	2	1	2	92.499	92.115	3	4.1599E-21	80995	160511_QHF_FH_JSI9i_2	135.62	128.17			0.8083	0.88483	46.365	5	3	Median	1.2086	1.039	NaN	1	0	Median	0.86863	1.0717	84.427	2	2	Median	0.72626	0.68619	NaN	1	0	Median	0.8083	0.88483	NaN	1	1	Median	171360000	95758000	75605000	43826000	19569000	24256000	47824000	26255000	21569000	57417000	36513000	20904000	22297000	13421000	8876400	7935	1400	7500	49210;49211;49212;49213;49214;49215;49216	66732;66733;66734;66735;66736;66737;66738;66739;66740	66736			9	
DITSDTSGDFR	0	Unmodified	1212.5259	0.5258602	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	40.248	34.624	2	1.2448E-35	18993	160513_QHF_FH_JSI12Kac_3	195.7	179.5			1.0852	1.0882	21.443	10	1	Median	1.1729	0.94515	NaN	1	0	Median	0.83267	0.96282	7.3307	3	0	Median	0.77094	0.7579	36.905	3	1	Plateau	1.2666	1.3553	8.3584	3	0	Plateau	6147300000	3130900000	3016400000	1301200000	577280000	723900000	1621000000	829670000	791320000	1932000000	1071200000	860750000	1293100000	652660000	640440000	7936	805	7501	49217;49218;49219;49220;49221;49222;49223;49224;49225;49226	66741;66742;66743;66744;66745;66746;66747;66748;66749;66750;66751;66752;66753;66754;66755;66756;66757;66758	66755			18	
DITSDTSGDFRNALLSLAK	1	Unmodified	2023.0222	0.02219859	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	98.483	98.355	3	2.9109E-05	85072	160511_QHF_FH_JSI12i_3	74.519	40.425			0.4695	0.50949	13.714	4	2	Median	0.75367	0.66086	NaN	1	0	Median	0.42476	0.50203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4695	0.50468	3.4289	2	1	Median	73307000	48921000	24386000	17653000	6864800	10788000	6589400	4085500	2503900	5829800	5829800	0	43235000	32141000	11094000	7937	805	7502	49227;49228;49229;49230;49231	66759;66760;66761;66762;66763	66763			5	
DITSLFR	0	Unmodified	850.45487	0.45486751	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		74.749	74.078	2	0.0057781	66053	160511_QHF_FH_JSI10i_2	97.071	34.357			0.62137	2.2217	68.638	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.60872	0.78155	NaN	1	1	Median	1.2039	1.1636	91.467	2	2	Median	NaN	NaN	NaN	0	0	Median	41103000	21244000	19858000	0	0	0	12523000	7662100	4861000	28580000	13582000	14997000	0	0	0	7938	4286	7503	49232;49233;49234	66764;66765;66766	66766			3	
DITSSIHFEAYR	0	Unmodified	1437.6888	0.6888432	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	5.5	6.06		3							1	2	1		1	63.516	60.564	3	0.001894	32047	160513_QHF_FH_JSI9Kac_6	52.555	36.418			1.1201	1.2017	9.3229	4	0	Median	1.3492	1.1396	14.789	2	0	Median	0.99473	1.2338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.021	1.1704	NaN	1	0	Median	137220000	62407000	74815000	35248000	17192000	18057000	48114000	24385000	23728000	0	0	0	53860000	20829000	33031000	7939	5298	7504	49235;49236;49237;49238	66767;66768;66769	66769			3	
DITVESK	1	Unmodified	790.40725	0.40724861	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6.5	5.5	1				1						1		1	16.831	16.373	2	0.020458	14020	160511_QHF_FH_JSI12i_1	60.682	28.746			7.1834	7.3957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.1834	7.3957	NaN	1	1	Median	102180000	33396000	68786000	0	0	0	0	0	0	0	0	0	102180000	33396000	68786000	7940	4292	7505	49239;49240	66770;66771	66770			2	
DITYFIQQLLR	0	Unmodified	1408.7715	0.77145062	1939	P61158;Q9C0K3	ACTR3;ACTR3C	Actin-related protein 3;Actin-related protein 3C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	1	3	101.9	97.061	2	6.6673E-65	50234	160513_QHF_FH_JSI12Kac_6	234.71	183.64			1.1948	1.2041	91.317	7	5	Median	0.42589	0.36786	NaN	1	1	Median	1.3306	1.5562	44.435	2	1	Median	1.1948	1.1173	NaN	1	0	Median	1.8566	1.8387	96.815	3	3	Median	2643200000	992270000	1651000000	365070000	262780000	102290000	921940000	425040000	496890000	96551000	46244000	50307000	1259700000	258200000	1001500000	7941	1939	7506	49241;49242;49243;49244;49245;49246;49247	66772;66773;66774;66775;66776;66777;66778;66779	66777			7	
DIVAAIQHNYK	1	Unmodified	1270.667	0.66698555	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.4	0.49		3	2									2	3	51.617	50.657	2	9.0633E-14	43418	160511_QHF_FH_JSI12i_2	138.1	97.746			1.5454	1.6591	29.104	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.311	1.3505	NaN	1	1	Median	1.8218	2.0382	NaN	1	1	Median	163080000	72099000	90985000	0	0	0	0	0	0	90814000	40377000	50437000	72270000	31722000	40548000	7942	2970	7507	49248;49249;49250;49251;49252	66780;66781;66782;66783;66784	66782			5	
DIVAAIQHNYKMSAFK	2	Acetyl (K)	1876.9506	0.95055397	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	82.979	74.906	2;3	7.3314E-53	40940	160513_QHF_FH_JSI11Kac_6	198.23	161.38			1.2663	1.1924	104.4	5	2	Median	4.7056	3.9558	NaN	1	1	Median	9.0098	10.421	NaN	1	1	Median	1.2027	1.1387	6.5191	2	0	Median	0.87515	0.93892	NaN	1	0	Median	491510000	225940000	265570000	67321000	16030000	51291000	143630000	97104000	46525000	186750000	73697000	113050000	93808000	39104000	54704000	7943	2970	7508	49253;49254;49255;49256;49257;49258;49259	66785;66786;66787;66788;66789;66790;66791;66792;66793;66794	66787	2728		10	
DIVAIILNEFR	0	Unmodified	1301.7343	0.73433683	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	2	2	3	1	101.68	96.717	2	3.9173E-25	55772	160513_QHF_FH_JSI10Kac_6	190.88	114.82			0.59765	0.6132	137.27	7	4	Median	0.53576	0.46315	126.3	2	0	Median	0.59618	0.7111	280.03	2	2	Median	0.23366	0.22205	91.783	3	2	Plateau	NaN	NaN	NaN	0	0	Median	770320000	521840000	248490000	152600000	80158000	72444000	246000000	145530000	100470000	239170000	163600000	75574000	132550000	132550000	0	7944	1670	7509	49260;49261;49262;49263;49264;49265;49266;49267	66795;66796;66797;66798;66799;66800;66801;66802	66802			8	
DIVALMTR	0	Unmodified	917.50044	0.50043749	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.65	67.075	2	0.0095222	58629	160511_QHF_FH_JSI11i_2	64.42	42.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25261000	0	25261000	0	0	0	0	0	0	25261000	0	25261000	0	0	0	7945	2197	7510	49268	66803	66803			1	
DIVALMVR	0	Unmodified	915.52117	0.52117293	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.24		8	2				3	6		4	5	6	4	77.922	72.5	2	0.00069244	36959	160513_QHF_FH_JSI10Kac_4	93.262	63.689			0.44422	0.41766	163.07	16	16	Median	1.7191	1.4645	163.22	4	4	Median	0.24532	0.29492	127.36	4	4	Median	1.589	1.57	238.07	4	4	Median	0.99899	1.1255	147.07	4	4	Median	323460000	150850000	172610000	51580000	20811000	30769000	72462000	40930000	31532000	118840000	45777000	73067000	80574000	43332000	37242000	7946	999	7511	49269;49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282;49283;49284;49285;49286;49287	66804;66805;66806;66807;66808;66809;66810;66811;66812;66813;66814;66815;66816;66817;66818;66819;66820;66821;66822;66823	66810			20	
DIVALMVR	0	Oxidation (M)	931.51609	0.51608756	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.481							4	7		1	4	3	3	64.107	53.327	2	0.0069551	26975	160513_QHF_FH_JSI12Kac_5	70.268	49.986			0.65972	0.68468	95.241	9	7	Median	0.94286	0.78959	NaN	1	0	Median	0.35313	0.42423	129.29	3	3	Median	1.4732	1.4424	99.412	3	3	Plateau	1.2114	1.3041	91.121	2	1	Median	60018000	29037000	30981000	6283900	3359000	2924900	22229000	12956000	9273100	24904000	9473200	15431000	6600500	3249000	3351600	7947	999	7511	49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298	66824;66825;66826;66827;66828;66829;66830;66831;66832;66833;66834;66835	66832		575	12	
DIVDSIK	1	Unmodified	788.42798	0.42798405	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	38.704	38.084	2	0.016128	34198	160511_QHF_FH_JSI10i_1	63.565	6.2841			0.9557	0.91054	62.49	8	8	Median	1.1171	0.91562	71.145	2	2	Median	0.85655	1.0036	72.268	2	2	Median	1.0214	1.0013	99.529	2	2	Median	0.75376	0.78425	79.627	2	2	Median	858190000	445760000	412430000	159550000	78819000	80734000	249360000	137620000	111730000	242850000	118920000	123930000	206430000	110390000	96036000	7948	1018	7512	49299;49300;49301;49302;49303;49304;49305;49306	66836;66837;66838;66839;66840;66841;66842;66843	66841			8	
DIVEELSALK	1	Unmodified	1115.6074	0.60740498	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	87.66	87.168	2	0.00010391	79283	160511_QHF_FH_JSI11i_1	100.02	79.497			1.083	1.0641	56.974	7	6	Median	0.98129	0.79747	82.632	2	2	Median	0.59311	0.6868	NaN	1	0	Median	1.4524	1.4106	39.861	2	2	Median	1.1273	1.1567	76.588	2	2	Median	173180000	82921000	90261000	37874000	19096000	18777000	27460000	16685000	10775000	58556000	23894000	34661000	49293000	23245000	26047000	7949	1576	7513	49307;49308;49309;49310;49311;49312;49313	66844;66845;66846;66847;66848;66849;66850;66851	66844			8	
DIVENICGR	0	Unmodified	1074.5128	0.51279309	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			42.185	41.377	2	0.00049069	37201	160511_QHF_FH_JSI10i_1	79.713	56.284			1.0232	0.98031	22.11	2	0	Median	1.0447	0.83843	NaN	1	0	Median	1.0022	1.1462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156650000	62633000	94022000	39035000	15237000	23798000	117620000	47396000	70224000	0	0	0	0	0	0	7950	1526	7514	49314;49315	66852	66852			1	
DIVENYFMR	0	Unmodified	1185.5488	0.54884425	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.29	4	4	3				1	2		3	5	4	2	74.033	71.064	2	3.8726E-23	63993	160511_QHF_FH_JSI10i_2	190.51	176.35			1.0649	1.1055	20.408	13	1	Median	1.2349	1.0394	11.471	2	0	Median	0.899	1.1055	22.896	5	0	Median	1.0154	1.0075	22.417	4	1	Median	1.0121	1.0624	12.044	2	0	Median	2243300000	1138100000	1105200000	414940000	204570000	210380000	623460000	337420000	286040000	797480000	347130000	450350000	407400000	249000000	158400000	7951	2380	7515	49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329	66853;66854;66855;66856;66857;66858;66859;66860;66861;66862;66863;66864;66865;66866;66867;66868	66868			16	
DIVENYFMR	0	Oxidation (M)	1201.5438	0.54375887	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	0		By matching		By MS/MS	14.7	0.471							1	2			1		2	71.275	60.641	2	0.041019	30219	160513_QHF_FH_JSI12Kac_5	37.727	31.278			1.1137	1.2109	12.284	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2338	1.4177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0696	1.1609	5.9656	2	0	Median	8716400	4447800	4268600	0	0	0	1323800	686510	637310	0	0	0	7392600	3761300	3631300	7952	2380	7515	49330;49331;49332	66869	66869			1	
DIVEYAELK	1	Unmodified	1078.5546	0.55464113	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	63.577	62.865	2	0.0013004	55860	160511_QHF_FH_JSI9i_1	78.113	42.817			2.3682	1.923	90.92	3	3	Median	2.3682	1.923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.8665	6.5405	NaN	1	1	Median	1.083	1.1068	NaN	1	1	Median	488560000	113430000	375140000	82048000	27266000	54782000	0	0	0	320670000	49062000	271610000	85845000	37098000	48747000	7953	3229	7516	49333;49334;49335	66870;66871;66872	66872			3	
DIVGANEK	1	Unmodified	844.42905	0.42904669	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				3	2	2	2	16.596	14.301	2	0.0012624	12606	160511_QHF_FH_JSI12i_1	91.853	44.005			1.2645	1.3007	47.341	8	5	Median	1.8172	1.4795	62.627	3	2	Median	0.42643	0.51006	NaN	1	1	Median	1.3878	1.3538	16.884	2	1	Median	1.0589	1.1424	29.568	2	1	Median	3067200000	1448600000	1618600000	1135500000	485040000	650490000	586630000	343670000	242960000	673540000	265990000	407540000	671470000	353900000	317570000	7954	2757	7517	49336;49337;49338;49339;49340;49341;49342;49343;49344	66873;66874;66875;66876;66877;66878;66879;66880;66881;66882	66876			10	
DIVGDFR	0	Unmodified	820.40792	0.40791731	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				46.029	44.805	2	0.036665	39789	160511_QHF_FH_JSI9i_1	50.127	25.128			1.1155	0.93122	NaN	1	1	Median	1.1155	0.93122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23606000	12647000	10959000	23606000	12647000	10959000	0	0	0	0	0	0	0	0	0	7955	3234	7518	49345	66883	66883			1	
DIVHKPGPIVLTVAK	2	Unmodified	1585.9556	0.955563	182	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	56.219	55.971	3	0.0018095	48089	160511_QHF_FH_JSI12i_3	54.234	52.023			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7956	182	7519	49346	66884	66884			1	
DIVHSGLAYTMER	0	Unmodified	1490.7188	0.71876312	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.09		8	6					2	4	5	5	6	4	60.577	57.055	2;3	1.1993E-22	48984	160511_QHF_FH_JSI12i_2	145.6	140.32			1.0331	1.0381	23.73	20	3	Median	1.2779	1.0609	10.609	5	1	Median	0.74016	0.9322	16.507	5	1	Median	1.0331	1.0282	20.089	6	0	Median	0.89966	0.99856	32.387	4	1	Linear	2321300000	1151200000	1170100000	449940000	231590000	218340000	563970000	316480000	247480000	602870000	290120000	312750000	704480000	313000000	391480000	7957	762	7520	49347;49348;49349;49350;49351;49352;49353;49354;49355;49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366	66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905;66906;66907;66908;66909;66910;66911;66912	66888			28	
DIVIAETLEDLDRNK	1	Unmodified	1742.905	0.90504357	4020	Q96D15	RCN3	Reticulocalbin-3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	89.43	88.771	3	0.0036099	76867	160511_QHF_FH_JSI12i_2	56.599	42.92			1.5185	1.4445	109.07	2	2	Median	3.6249	3.1237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6361	0.66799	NaN	1	1	Median	28293000	12448000	15845000	11200000	1868100	9332300	0	0	0	0	0	0	17092000	10579000	6513100	7958	4020	7521	49367;49368	66913;66914	66913			2	
DIVIEMEDTKPLLASK	2	Unmodified	1800.9543	0.95430195	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	82.806	81.952	3	0.0012755	72032	160511_QHF_FH_JSI11i_2	62.378	44.461			0.8214	0.83912	36.372	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1512	1.0852	NaN	1	1	Median	0.58609	0.64883	NaN	1	1	Median	37323000	20350000	16973000	0	0	0	0	0	0	16247000	7030100	9217300	21076000	13320000	7755300	7959	5161	7522	49369;49370	66915;66916	66916			2	
DIVINANPASPPLSLLVLHR	0	Unmodified	2138.2212	0.22117317	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			10.8	6.37			2						3	2	3			95.703	91.577	3	3.6909E-10	83806	160511_QHF_FH_JSI10i_3	115.57	111.04			1.2209	1.257	18.245	5	0	Median	1.4161	1.1809	25.234	2	0	Median	1.0717	1.257	16.146	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	575740000	251490000	324250000	117620000	46253000	71365000	458120000	205240000	252880000	0	0	0	0	0	0	7960	2362	7523	49371;49372;49373;49374;49375	66917;66918;66919;66920	66917			3	
DIVISVGIYNLVQK	1	Unmodified	1559.8923	0.89229404	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				92.422	83.564	2	7.7591E-05	46882	160513_QHF_FH_JSI9Kac_6	140.3	122.86			1.678	1.4348	10.283	2	2	Median	1.678	1.4348	10.283	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38039000	12908000	25132000	38039000	12908000	25132000	0	0	0	0	0	0	0	0	0	7961	1023	7524	49376;49377	66921;66922	66921			2	
DIVKEVAK	2	Acetyl (K)	942.5386	0.53859714	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					1	2					1	1	1	50.191	40.933	2	0.031334	21659	160513_QHF_FH_JSI10Kac_3	61.962	15.537			0.18925	0.20125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18925	0.20125	NaN	1	0	Median	12728000	10961000	1767200	0	0	0	3101000	3101000	0	819740	819740	0	8807700	7040400	1767200	7962	1266	7525	49378;49379;49380	66923;66924;66925	66925			3	
DIVKVIDGPHSGR	1	Acetyl (K)	1433.7627	0.76267685	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		61.338	50.43	3	0.0057409	27556	160513_QHF_FH_JSI11Kac_5	56.599	34.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2448200	2448200	0	0	0	0	0	0	0	2448200	2448200	0	0	0	0	7963	116	7526	49381	66926	66926	75		1	
DIVNGLR	0	Unmodified	785.43955	0.43955179	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	1	3	34.326	33.604	2	0.0078525	30017	160511_QHF_FH_JSI11i_1	85.89	44.969			0.91837	1.0398	46.649	6	3	Median	1.6081	1.3431	NaN	1	0	Median	0.78792	0.91207	NaN	1	0	Median	0.76362	0.73972	NaN	1	0	Median	1.0704	1.1854	66.639	3	3	Median	887240000	453620000	433620000	144990000	58134000	86858000	200450000	110780000	89672000	209720000	109780000	99936000	332080000	174930000	157150000	7964	1607	7527	49382;49383;49384;49385;49386;49387	66927;66928;66929;66930;66931;66932;66933;66934;66935	66927			9	
DIVPGDIVEIAVGDK	1	Unmodified	1538.8192	0.81918867	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	101.18	101.08	2;3	2.7061E-07	91629	160511_QHF_FH_JSI12i_1	136.27	83.478			1.0239	1.0234	24.455	7	5	Median	1.3157	1.0894	NaN	1	0	Median	0.84456	0.99345	27.06	2	2	Median	1.0562	1.0234	NaN	1	0	Median	0.71875	0.76509	29.175	3	3	Median	1900200000	1077200000	822980000	114000000	52285000	61711000	794000000	466860000	327140000	276030000	146900000	129140000	716140000	411140000	304990000	7965	1103	7528	49388;49389;49390;49391;49392;49393;49394	66936;66937;66938;66939;66940;66941;66942;66943;66944	66938			9	
DIVPVDASYEVK	1	Unmodified	1333.6765	0.67654718	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	62.04	61.444	2	9.8774E-05	55689	160511_QHF_FH_JSI10i_1	90.05	42.448			0.76158	0.81971	40.211	5	3	Median	0.76158	0.62328	NaN	1	0	Median	0.73143	0.8853	NaN	1	0	Median	0.81996	0.79557	75.972	2	2	Median	0.80056	0.81971	NaN	1	1	Median	410800000	233540000	177260000	101100000	54820000	46279000	65338000	40872000	24465000	155980000	89362000	66613000	88393000	48487000	39906000	7966	315	7529	49395;49396;49397;49398;49399	66945;66946;66947;66948;66949;66950;66951	66949			7	
DIVQFVPFR	0	Unmodified	1119.6077	0.60767976	479;3387	Q86YQ8;Q9HCH3;Q8IYJ1;Q96FN4;Q96A23;O95741;Q9UBL6;O75131	CPNE8;CPNE5;CPNE9;CPNE2;CPNE4;CPNE6;CPNE7;CPNE3	Copine-8;Copine-5;Copine-9;Copine-2;Copine-4;Copine-6;Copine-7;Copine-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.42	2	2	1					3		1	2	3	2	89.014	83.472	2	8.4594E-06	77444	160511_QHF_FH_JSI12i_2	107.66	44.185			0.5974	2.4501	68.43	6	6	Linear	0.5615	0.44947	NaN	1	1	Median	0.83997	0.9885	84.864	2	2	Median	0.97873	0.94026	105.59	2	2	Median	0.63559	0.66864	NaN	1	1	Median	83996000	41766000	42230000	2440300	1564500	875820	11641000	7140200	4500300	48341000	21916000	26425000	21575000	11145000	10430000	7967	3387;479	7530	49400;49401;49402;49403;49404;49405;49406;49407	66952;66953;66954;66955;66956;66957;66958;66959	66953			8	
DIVQFVPYR	0	Unmodified	1135.6026	0.60259438	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								2	1		1	74.742	73.804	2	7.6918E-05	65044	160511_QHF_FH_JSI9i_2	98.299	77.779			0.49691	0.41923	74.385	3	3	Plateau	0.49691	0.41923	NaN	1	1	Median	1.0667	1.3227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5549	1.688	NaN	1	1	Median	95364000	53608000	41756000	39884000	25878000	14006000	30616000	16252000	14364000	0	0	0	24864000	11478000	13386000	7968	4320	7531	49408;49409;49410;49411	66960;66961;66962;66963;66964	66962			5	
DIVQFVPYRR	0	Unmodified	1291.7037	0.70370541	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			63.109	61.6	3	0.0020018	51586	160511_QHF_FH_JSI10i_3	49.418	33.528			0.34882	0.34096	20.595	2	2	Median	0.486	0.39442	NaN	1	1	Median	0.25037	0.29476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39731000	27439000	12292000	23813000	15722000	8090600	15919000	11717000	4201800	0	0	0	0	0	0	7969	4320	7532	49412;49413	66965;66966	66965			2	
DIVQWLNASSGMKPER	1	Unmodified	1829.9094	0.90941744	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			86.207	85.009	3	0.00021563	69805	160511_QHF_FH_JSI9i_3	67.605	41.458			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7970	3136	7533	49414;49415	66967;66968	66968			2	
DIVSLVPR	0	Unmodified	897.52837	0.5283668	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	66.932	65.058	2	0.0012164	59480	160511_QHF_FH_JSI12i_1	92.47	33.866			0.93035	0.96768	18.875	9	1	Median	1.0818	0.89799	10.928	2	0	Median	0.81515	0.96848	0.11727	2	0	Median	1.059	1.0548	23.264	3	1	Plateau	0.78196	0.83905	6.5054	2	0	Median	707080000	377800000	329280000	142390000	70359000	72031000	158070000	91658000	66409000	224270000	108570000	115700000	182350000	107210000	75137000	7971	707	7534	49416;49417;49418;49419;49420;49421;49422;49423;49424	66969;66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984;66985	66974			17	
DIVVLGVEK	1	Unmodified	970.5699	0.56989727	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	8					4	2			3	4	4	3	62.788	57.708	2	0.00025092	55880	160511_QHF_FH_JSI10i_1	98.033	53.586			0.47286	0.55815	134.4	14	10	Median	1.1916	0.92786	111.99	3	2	Median	0.47286	0.55815	102.09	4	4	Median	0.80041	0.77143	135.95	4	2	Median	0.40042	0.43941	226.56	3	2	Median	1005100000	459330000	545810000	277080000	124720000	152360000	283360000	150090000	133270000	238550000	102080000	136480000	206150000	82443000	123700000	7972	209	7535	49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435;49436;49437;49438	66986;66987;66988;66989;66990;66991;66992;66993;66994;66995;66996;66997;66998;66999;67000	66994			14	
DIVVQETMEDIDK	1	Unmodified	1533.7232	0.72323938	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.831	7		2							1	2	3	3	71.075	70.601	2	1.9456E-66	62738	160511_QHF_FH_JSI9i_1	229.16	212.13			0.88781	0.73446	89.505	7	6	Median	0.88781	0.73446	NaN	1	0	Median	0.8626	1.027	98.491	2	2	Median	1.1987	1.1534	119.27	2	2	Median	1.3572	1.4347	144.81	2	2	Median	4449600000	2090000000	2359600000	491610000	222890000	268720000	1553700000	859680000	694000000	1160600000	542020000	618540000	1243800000	465440000	778340000	7973	388	7536	49439;49440;49441;49442;49443;49444;49445;49446;49447	67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016	67013			16	
DIVVQETMEDIDK	1	Oxidation (M)	1549.7182	0.718154	388	O43852	CALU	Calumenin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.78	8				3	4				3	5	3	4	55.847	51.436	2	1.1631E-05	46604	160511_QHF_FH_JSI10i_1	121.68	100.9			0.91008	0.94727	86.549	14	14	Median	1.5423	1.2966	68.885	3	3	Median	0.43982	0.49158	54.427	5	5	Median	1.0119	0.97191	25.078	2	2	Median	2.8763	3.0811	81.569	4	4	Median	248950000	112690000	136260000	79937000	32420000	47517000	72845000	42963000	29882000	66434000	25700000	40734000	29736000	11610000	18125000	7974	388	7536	49448;49449;49450;49451;49452;49453;49454;49455;49456;49457;49458;49459;49460;49461;49462	67017;67018;67019;67020;67021;67022;67023;67024;67025;67026;67027;67028;67029;67030;67031	67022		157	15	
DIVWFLK	1	Unmodified	919.51674	0.51673948	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	99.393	99.254	2	0.0043605	85442	160511_QHF_FH_JSI12i_2	86.113	36.073			0.31931	0.35783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31931	0.35783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18638000	10792000	7845900	4546800	1602000	2944800	4116500	3464100	652350	5725700	5725700	0	4248700	0	4248700	7975	4586	7537	49463;49464;49465;49466;49467;49468;49469	67032;67033;67034;67035;67036;67037;67038	67033			7	
DIYAYLR	0	Unmodified	912.47052	0.47051757	1058	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				66.139	65.229	2	0.014877	57436	160511_QHF_FH_JSI9i_2	57.463	29.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7976	1058	7538	49470	67039	67039			1	
DIYQDLNR	0	Unmodified	1035.4985	0.49852324	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	40.2	39.698	2	0.0012164	35984	160511_QHF_FH_JSI12i_1	92.47	57.663			1.3631	1.5199	30.377	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6168	1.884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1492	1.2261	NaN	1	0	Median	213610000	111370000	102240000	0	0	0	105640000	49133000	56511000	0	0	0	107960000	62232000	45729000	7977	1557	7539	49471;49472	67040;67041	67041			2	
DIYYLPFK	1	Unmodified	1057.5484	0.54843354	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	83.73	83.334	2	0.0031291	75889	160511_QHF_FH_JSI11i_1	81.297	65.153			0.59544	0.59353	98.714	6	6	Median	1.4296	1.2017	NaN	1	1	Median	0.58495	0.64777	112.13	2	2	Median	0.79232	0.76619	150.87	2	2	Median	0.25465	0.25076	NaN	1	1	Median	71409000	43371000	28038000	9114900	3877000	5237900	24878000	16287000	8591000	25512000	14690000	10822000	11904000	8517100	3386500	7978	15	7540	49473;49474;49475;49476;49477;49478	67042;67043;67044;67045;67046;67047	67042			6	
DKDDDEVFEK	2	Unmodified	1238.5303	0.53027687	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.659	21.132	2	0.0026295	18239	160511_QHF_FH_JSI9i_1	76.228	64.181			0.74917	0.66234	66.372	4	2	Median	0.97193	0.7831	NaN	1	0	Median	0.22689	0.26184	NaN	1	1	Median	0.57747	0.5602	NaN	1	0	Median	1.1925	1.2697	NaN	1	1	Median	818240000	474350000	343900000	176670000	91206000	85464000	116140000	88540000	27603000	271810000	167210000	104600000	253620000	127390000	126230000	7979	2217	7541	49479;49480;49481;49482	67048;67049;67050;67051;67052	67052			5	
DKDPPIPVAK	2	Unmodified	1078.6023	0.60226003	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			2	2	1	2	31.064	29.031	2;3	0.001196	25817	160511_QHF_FH_JSI10i_1	57.532	44.576			1.0728	1.1245	38.2	7	2	Median	1.694	1.4087	63.989	2	1	Median	0.76741	0.92344	45.981	2	1	Median	1.3065	1.258	NaN	1	0	Median	0.9351	0.99093	17.882	2	0	Median	1984400000	832330000	1152000000	485200000	186570000	298630000	509410000	251930000	257470000	503400000	196650000	306750000	486340000	197180000	289160000	7980	1034	7542	49483;49484;49485;49486;49487;49488;49489	67053;67054;67055;67056;67057;67058;67059;67060;67061;67062;67063;67064	67058			12	
DKDPVNK	2	Unmodified	814.41848	0.418482	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	5.3562	5.0491	2;3	0.019474	3072	160511_QHF_FH_JSI12i_1	46.016	26.239			0.68259	0.73462	52.037	6	2	Median	1.4284	1.2111	NaN	1	0	Median	0.43376	0.52008	35.575	2	1	Median	0.82574	0.80688	NaN	1	0	Median	0.57913	0.60603	83.349	2	1	Median	17332000000	8215500000	9116100000	3612300000	1485800000	2126400000	4601700000	2368800000	2232900000	4132700000	2170800000	1961900000	4985000000	2190000000	2795000000	7981	2026	7543	49490;49491;49492;49493;49494;49495	67065;67066;67067	67065			3	
DKEDQPQGLVPGGAVVVLSGPHR	1	Unmodified	2354.2343	0.23425705	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			68.665	67.184	3	0.0023314	56311	160511_QHF_FH_JSI10i_3	43.349	34.529			0.59796	0.69431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59796	0.69431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14672000	10763000	3908900	0	0	0	14672000	10763000	3908900	0	0	0	0	0	0	7982	3906	7544	49496;49497	67068;67069;67070	67070			3	
DKEQELSEEDK	2	Unmodified	1348.5994	0.59941907	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	3	1	11.867	10.593	2;3	0.0011234	8550	160511_QHF_FH_JSI11i_1	68.676	51.733			0.88808	0.78182	58.663	8	7	Median	1.1116	0.91212	1.686	2	1	Median	0.97461	1.1371	108.32	2	2	Median	0.71269	0.67818	63.464	3	3	Median	0.49914	0.51243	NaN	1	1	Median	923610000	416610000	506990000	286320000	116020000	170300000	302480000	139160000	163320000	237950000	102340000	135610000	96860000	59098000	37762000	7983	2370	7545	49498;49499;49500;49501;49502;49503;49504;49505	67071;67072;67073;67074;67075;67076;67077;67078	67072			8	
DKFPEVIINFPDPAQK	2	Unmodified	1856.9672	0.96724989	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		89.79	89.252	3	0.0066493	78471	160511_QHF_FH_JSI11i_2	49.17	41.658			0.24651	0.24703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24651	0.24703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61178000	50719000	10459000	0	0	0	0	0	0	61178000	50719000	10459000	0	0	0	7984	2147	7546	49506	67079	67079			1	
DKFPGEFMK	2	Unmodified	1097.5216	0.52156686	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1				By MS/MS	2.67	0.471		1	2										3	45.996	45.755	3	0.0070987	39139	160511_QHF_FH_JSI12i_3	44.639	33.42			1.3772	1.4393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3772	1.4393	NaN	1	1	Median	46886000	20435000	26451000	0	0	0	0	0	0	0	0	0	46886000	20435000	26451000	7985	5658	7547	49507;49508;49509	67080;67081;67082	67082			3	
DKFSFDLGK	2	Acetyl (K)	1097.5393	0.53932542	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			77.951	67.407	2	0.0073688	35691	160513_QHF_FH_JSI10Kac_4	75.378	50.455			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3421300	0	3421300	0	0	0	3421300	0	3421300	0	0	0	0	0	0	7986	2193	7548	49510	67083	67083	2305		1	
DKGDEEEEGEEKLEEK	3	Unmodified	1891.8171	0.817076	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	22.7	22.17	3;4	0.00029525	19148	160511_QHF_FH_JSI9i_1	74.786	54.737			1.6642	1.4304	11.308	5	2	Median	1.7293	1.4304	NaN	1	0	Median	1.2226	1.427	NaN	1	1	Median	1.6642	1.6313	NaN	1	1	Median	1.4853	1.5938	18.528	2	0	Median	951710000	314960000	636750000	120220000	47575000	72645000	148170000	42699000	105470000	189230000	49740000	139490000	494090000	174950000	319150000	7987	1299	7549	49511;49512;49513;49514;49515	67084;67085;67086;67087;67088;67089	67088			5	
DKGEYTLVVK	2	Unmodified	1150.6234	0.6233894	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	4	3					3			2	2	3	3	38.711	35.134	2;3	0.0013981	29680	160511_QHF_FH_JSI11i_2	66.595	59.707			1.2242	1.2802	55.885	10	4	Median	1.7481	1.4505	100.7	2	1	Median	0.75943	0.89618	37.252	2	0	Median	1.1618	1.165	71.851	3	1	Median	1.6635	1.8192	19.1	3	2	Plateau	797280000	411740000	385540000	254690000	128360000	126340000	212860000	127830000	85029000	191340000	86677000	104660000	138390000	68875000	69515000	7988	1192	7550	49516;49517;49518;49519;49520;49521;49522;49523;49524;49525	67090;67091;67092;67093;67094;67095;67096;67097;67098;67099	67098			10	
DKHIEEVRK	2	Acetyl (K)	1194.6357	0.63568542	1105	P16949	STMN1	Stathmin	yes	yes	1	0	0	2			By MS/MS	By matching	15	0								2				1	1	21.41	12.106	3	0.043348	8772	160513_QHF_FH_JSI11Kac_5	42.395	34.17			0.53119	0.56023	23.937	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47635	0.47299	NaN	1	0	Median	0.59235	0.66355	NaN	1	0	Median	21961000	16214000	5746100	0	0	0	0	0	0	15837000	12043000	3793900	6123400	4171200	1952200	7989	1105	7551	49526;49527	67100	67100			1	
DKLDGNELDLSLSDLNEVPVK	2	Unmodified	2312.1747	0.17473607	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	92.588	92.203	3	3.9314E-13	83751	160511_QHF_FH_JSI10i_1	122.01	107.7			0.95268	0.92053	8.3869	4	0	Median	1.059	0.85897	NaN	1	0	Median	0.80927	0.94821	NaN	1	0	Median	0.90935	0.89366	NaN	1	0	Median	0.99807	1.0417	NaN	1	0	Median	493150000	256820000	236340000	48783000	22856000	25928000	170820000	94476000	76342000	119210000	63422000	55787000	154340000	76063000	78281000	7990	3968	7552	49528;49529;49530;49531	67101;67102;67103;67104;67105;67106;67107;67108;67109;67110;67111;67112;67113;67114;67115	67112			15	
DKLDQVSSEIK	2	Unmodified	1260.6561	0.65614609	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	34.927	34.461	2	0.021238	30777	160511_QHF_FH_JSI10i_1	77.192	47.719			0.73193	0.79195	23.695	2	2	Median	NaN	NaN	NaN	0	0	Median	0.80477	0.93641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66569	0.66978	NaN	1	1	Median	68212000	41596000	26616000	0	0	0	39984000	22728000	17256000	0	0	0	28228000	18868000	9359800	7991	2854	7553	49532;49533	67116;67117	67117			2	
DKLEETK	2	Unmodified	861.44436	0.4443624	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	1.2	0.4	4	1								2	1	1	1	6.1246	5.7825	3	0.013356	3857	160511_QHF_FH_JSI12i_1	49.418	8.3889			1.0573	1.2097	68.56	5	1	Median	1.1669	0.96399	32.103	2	0	Median	1.0573	1.2338	NaN	1	0	Median	0.73685	0.72866	NaN	1	0	Median	3.7279	3.999	NaN	1	1	Median	1436600000	684000000	752550000	392870000	195020000	197850000	344370000	176830000	167540000	418110000	220710000	197400000	281200000	91430000	189770000	7992	1464	7554	49534;49535;49536;49537;49538	67118;67119	67118			2	
DKLELEITDSKK	3	Unmodified	1417.7664	0.76642482	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	36.423	36.35	3	0.0071607	31853	160511_QHF_FH_JSI11i_3	53.051	43.763			0.79024	0.77699	51.537	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56782	0.53969	NaN	1	0	Median	1.0998	1.1186	NaN	1	0	Median	344990000	158580000	186400000	0	0	0	0	0	0	108390000	52592000	55799000	236600000	105990000	130610000	7993	446	7555	49539;49540	67120;67121	67120			2	
DKLESEMEDAYHEHQANLLR	1	Unmodified	2427.1125	0.11248694	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	61.252	60.971	3;4	1.483E-14	53925	160511_QHF_FH_JSI11i_3	149.36	127.76			1.1355	1.1944	10.568	5	0	Median	NaN	NaN	NaN	0	0	Median	0.96636	1.1944	NaN	1	0	Median	1.4071	1.33	5.0714	2	0	Median	1.0819	1.09	4.9294	2	0	Median	901870000	420250000	481630000	0	0	0	59404000	29696000	29707000	549130000	243490000	305640000	293340000	147060000	146280000	7994	1222	7556	49541;49542;49543;49544;49545	67122;67123;67124;67125;67126;67127;67128;67129	67122			8	
DKLFDQR	1	Acetyl (K)	962.48214	0.48214489	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		44.355	35.169	2	0.053009	19779	160513_QHF_FH_JSI11Kac_3	59.245	35.817			0.62471	0.67419	61.22	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87901	1.0394	NaN	1	0	Median	0.44398	0.4373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8994500	6074500	2919900	0	0	0	3871000	2454500	1416500	5123400	3620000	1503400	0	0	0	7995	2193	7557	49546;49547	67130	67130			1	
DKLPNYEEK	2	Acetyl (K)	1176.5663	0.56626845	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.471					2	1					1	1	1	43.463	34.468	2	0.0073688	19458	160513_QHF_FH_JSI11Kac_3	75.378	53.292			0.80797	0.9571	103.42	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80797	0.9571	NaN	1	0	Median	0.16077	0.15627	NaN	1	1	Median	0.85987	0.91697	NaN	1	0	Median	14083000	8790900	5291600	0	0	0	4697200	2389800	2307400	4947000	4080700	866370	4438300	2320500	2117800	7996	4461	7558	49548;49549;49550	67131;67132;67133;67134;67135	67131	3168		5	
DKLPQPVQPDPVSHCK	2	Unmodified	1843.9251	0.9250675	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	33.618	33.581	3;4	0.00010252	28347	160511_QHF_FH_JSI12i_3	74.428	70.394			1.4503	1.4448	57.472	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71138	0.65917	39.178	2	1	Median	1.5652	1.5768	NaN	1	0	Median	189370000	88115000	101250000	0	0	0	0	0	0	110050000	57373000	52673000	79320000	30742000	48578000	7997	841	7559	49551;49552;49553	67136;67137;67138;67139;67140	67139			5	
DKLPQSQLSHQDLQLVK	2	Unmodified	1976.0691	0.069089203	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	50.725	50.296	3	1.2884E-05	44421	160511_QHF_FH_JSI11i_3	90.385	73.701			1.0259	0.89802	8.7071	3	1	Median	1.0259	0.89802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0947	1.042	NaN	1	0	Median	0.88859	0.8943	NaN	1	0	Median	425530000	207860000	217660000	45772000	15826000	29946000	0	0	0	188580000	89296000	99280000	191180000	102740000	88435000	7998	2669	7560	49554;49555;49556	67141;67142;67143;67144	67141			4	
DKNEQAFEEVFQNANFR	1	Unmodified	2084.9552	0.95518166	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	79.704	79.466	3	1.7575E-06	68965	160511_QHF_FH_JSI12i_3	86.488	80.929			1.4758	1.3862	32.691	5	2	Median	NaN	NaN	NaN	0	0	Median	0.70195	0.8575	NaN	1	0	Median	1.5644	1.4734	8.6287	2	1	Median	1.3294	1.3458	46.37	2	1	Median	376790000	161040000	215750000	0	0	0	44933000	30545000	14389000	155650000	50817000	104830000	176200000	79675000	96530000	7999	1293	7561	49557;49558;49559;49560;49561	67145;67146;67147;67148;67149	67148			5	
DKPDLPTWKR	2	Acetyl (K)	1296.6826	0.68263561	2552	Q14653	IRF3	Interferon regulatory factor 3	yes	yes	1	0	0	2			By MS/MS	By MS/MS	15	0								2				1	1	57.671	46.912	3	0.017099	25809	160513_QHF_FH_JSI11Kac_5	49.5	40.771			0.87803	0.90788	40.477	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69973	0.68191	NaN	1	0	Median	1.1017	1.2087	NaN	1	0	Median	5744600	3426300	2318300	0	0	0	0	0	0	4172000	2808200	1363700	1572600	618070	954560	8000	2552	7562	49562;49563	67150	67150	2534		1	
DKPDNFQLFQSPHGK	2	Unmodified	1756.8533	0.85328277	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	46.686	45.68	2;3	3.3371E-05	39011	160511_QHF_FH_JSI12i_3	113.4	108.85		+	0.75208	0.75472	37.704	5	2	Median	1.1518	0.93428	60.389	2	2	Median	0.68345	0.78339	NaN	1	0	Median	0.8213	0.75472	NaN	1	0	Median	0.53382	0.53797	NaN	1	0	Median	663170000	325780000	337400000	57560000	24894000	32665000	99453000	55006000	44447000	342710000	143120000	199580000	163450000	102750000	60703000	8001	66	7563	49564;49565;49566;49567;49568;49569	67151;67152;67153;67154;67155;67156;67157;67158;67159;67160;67161	67161			11	
DKPEHVGVK	2	Unmodified	1007.54	0.53999412	4439	Q9BUE6	ISCA1	Iron-sulfur cluster assembly 1 homolog, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.7479	6.8456	3	0.023728	4384	160511_QHF_FH_JSI12i_3	39.873	30.659			2.5072	2.4891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5072	2.4891	NaN	1	1	Median	224200000	81323000	142880000	0	0	0	0	0	0	0	0	0	224200000	81323000	142880000	8002	4439	7564	49570	67162	67162			1	
DKPGSSLQSFMPEGK	2	Unmodified	1606.7661	0.76610724	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	53.862	53.862	3	0.022574	47651	160511_QHF_FH_JSI11i_3	36.597	31.882			1.2291	1.1549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2291	1.1549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58910000	23129000	35781000	0	0	0	0	0	0	58910000	23129000	35781000	0	0	0	8003	3639	7565	49571;49572	67163;67164	67163			2	
DKPHNIFK	2	Unmodified	997.53451	0.53451481	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	15.082	14.755	3	0.0012012	11286	160511_QHF_FH_JSI12i_3	69.825	60.611			0.88904	0.73961	15.321	3	0	Median	0.88904	0.7266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99985	0.95545	NaN	1	0	Median	0.73148	0.73961	NaN	1	0	Median	1364200000	635120000	729110000	285760000	127480000	158280000	0	0	0	426720000	191610000	235120000	651750000	316040000	335710000	8004	1262	7566	49573;49574;49575	67165;67166;67167;67168;67169	67168			5	
DKPHNIFK	2	Acetyl (K)	1039.5451	0.5450795	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		43.791	33.52	3	0.056031	18999	160513_QHF_FH_JSI11Kac_5	32.32	22.333			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2641300	2641300	0	0	0	0	0	0	0	2641300	2641300	0	0	0	0	8005	1262	7566	49576	67170	67170			1	
DKPLLSALDFEK	2	Unmodified	1374.7395	0.73948179	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	74.668	74.377	3	0.005725	64486	160511_QHF_FH_JSI12i_3	50.088	39.762			0.93292	0.92676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93292	0.92676	NaN	1	1	Median	77003000	40999000	36004000	0	0	0	0	0	0	0	0	0	77003000	40999000	36004000	8006	4792	7567	49577	67171	67171			1	
DKPLPPLLAR	1	Unmodified	1118.6812	0.68117905	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	50.944	50.046	3	0.00091212	41931	160511_QHF_FH_JSI10i_3	61.56	58.582			0.96917	1.023	15.705	6	0	Median	1.1751	0.98122	13.557	2	0	Median	0.84307	1.023	3.7715	2	0	Median	1.1999	1.1498	NaN	1	0	Median	0.74123	0.74604	NaN	1	0	Median	468750000	245030000	223720000	128410000	59960000	68446000	120640000	66959000	53679000	167710000	86290000	81420000	51996000	31816000	20179000	8007	2578;2318	7568	49578;49579;49580;49581;49582;49583	67172;67173;67174;67175;67176;67177;67178;67179;67180;67181;67182;67183	67176			12	
DKPNPQLIYDDEIPSLK	2	Unmodified	1984.0153	0.015322298	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	74.777	74.182	3	0.00032089	67553	160511_QHF_FH_JSI12i_1	71.558	61.362			0.14248	0.13567	59.072	3	3	Median	0.071075	0.059359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14248	0.13567	NaN	1	1	Median	0.17811	0.18641	NaN	1	1	Median	881720000	775320000	106400000	332690000	308410000	24283000	0	0	0	314370000	269950000	44426000	234650000	196970000	37687000	8008	5523	7569	49584;49585;49586	67184;67185;67186	67185			3	
DKPSFVR	1	Unmodified	847.4552	0.45520186	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.902	16.902	3	0.020602	14014	160511_QHF_FH_JSI11i_3	40.268	18.137			0.88107	0.81696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88107	0.81696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99393000	50253000	49140000	0	0	0	0	0	0	99393000	50253000	49140000	0	0	0	8009	4704	7570	49587	67187	67187			1	
DKPSVEPVEEYDYEDLK	2	Unmodified	2053.9368	0.93679721	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	59.386	58.737	3	0.00026731	53432	160511_QHF_FH_JSI12i_1	59.9	50.242			0.91626	0.9282	9.0575	4	0	Median	1.099	0.89013	NaN	1	0	Median	0.81483	0.9679	NaN	1	0	Median	0.84119	0.82874	NaN	1	0	Median	0.99804	1.0172	NaN	1	0	Median	289520000	153440000	136080000	49005000	20597000	28408000	63391000	35199000	28191000	92010000	50913000	41097000	85117000	46734000	38383000	8010	5610	7571	49588;49589;49590;49591	67188	67188			1	
DKPTFIK	2	Unmodified	847.48035	0.48035398	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.345	23.327	3	0.036775	19239	160511_QHF_FH_JSI12i_3	36.395	17.956			0.49181	0.50301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49181	0.50301	NaN	1	1	Median	111240000	63571000	47664000	0	0	0	0	0	0	0	0	0	111240000	63571000	47664000	8011	3826	7572	49592	67189	67189			1	
DKPTHEILQK	2	Unmodified	1207.6561	0.65608651	3932	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	13.559	13.632	2	0.040896	10557	160511_QHF_FH_JSI12i_3	73.985	52.685			1.8145	1.788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8145	1.788	NaN	1	1	Median	27304000	7885100	19419000	0	0	0	0	0	0	0	0	0	27304000	7885100	19419000	8012	3932	7573	49593	67190	67190			1	
DKPTYDEIFYTLSPVNGK	2	Unmodified	2086.0259	0.025886985	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	88.463	87.894	3	0.0004726	80149	160511_QHF_FH_JSI11i_1	63.337	54.054			0.75762	0.87114	31.11	5	3	Median	0.62388	0.54907	NaN	1	1	Median	0.68927	0.87114	NaN	1	1	Median	0.89043	0.88215	25.165	2	1	Median	1.1547	1.2183	NaN	1	0	Median	93330000	50837000	42493000	16856000	10964000	5892500	13839000	8175700	5663000	38882000	21252000	17630000	23753000	10446000	13307000	8013	4727	7574	49594;49595;49596;49597;49598	67191;67192;67193;67194;67195;67196	67191			6	
DKPVPLPAPEMTVKQER	2	Acetyl (K)	1976.0401	0.040097261	4631	Q9H0E9	BRD8	Bromodomain-containing protein 8	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14	0							2				1		1	71.504	60.872	3	0.0084339	32920	160513_QHF_FH_JSI12Kac_4	55.33	44.696			0.92809	1.042	16.186	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78865	0.92935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0922	1.1684	NaN	1	0	Median	7256400	3867000	3389400	0	0	0	3913000	2287000	1626000	0	0	0	3343400	1580000	1763400	8014	4631	7575	49599;49600	67197;67198	67198	3205		2	
DKQDEEQRLK	2	Unmodified	1287.6419	0.64189301	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	7.1682	6.9095	2;3	0.00015503	4456	160511_QHF_FH_JSI11i_3	73.781	64.587			0.8713	0.89051	17.058	10	0	Median	1.3697	1.1731	9.8118	2	0	Median	0.65446	0.80329	7.8958	2	0	Median	1.0986	1.0323	16.002	3	0	Median	0.81292	0.84464	4.5638	3	0	Median	3062300000	1481500000	1580800000	429670000	182970000	246700000	700060000	393500000	306550000	1235600000	594980000	640600000	697010000	310080000	386930000	8015	1297	7576	49601;49602;49603;49604;49605;49606;49607;49608;49609;49610	67199;67200;67201;67202;67203;67204;67205;67206;67207;67208;67209;67210;67211	67199			12	
DKQMLLFTHIR	1	Acetyl (K)	1442.7704	0.77040476	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.437	70.123	3	0.00044729	38440	160513_QHF_FH_JSI11Kac_6	79.633	60.309			0.50408	0.48726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50408	0.48726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22774000	16788000	5986300	0	0	0	0	0	0	22774000	16788000	5986300	0	0	0	8016	3290	7577	49611	67212	67212	2823		1	
DKQPYEQK	2	Unmodified	1034.5033	0.50327426	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.2578	5.9249	2	0.0066539	3685	160511_QHF_FH_JSI11i_1	95.741	63.131			1.0021	1.04	12.117	4	0	Median	1.0008	0.83088	NaN	1	0	Median	0.92883	1.076	NaN	1	0	Median	1.0321	1.0113	NaN	1	0	Median	1.0034	1.0694	NaN	1	0	Median	737840000	392490000	345360000	94884000	45310000	49574000	199870000	98235000	101640000	187720000	103750000	83968000	255370000	145190000	110180000	8017	1280	7578	49612;49613;49614;49615	67213;67214;67215;67216	67213			4	
DKTIIMWK	2	Acetyl (K)	1075.5736	0.57360243	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		78.302	67.589	2	0.017901	36144	160513_QHF_FH_JSI11Kac_4	69.825	55.049			0.011958	0.012142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.011958	0.012142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2098600	2021000	77623	0	0	0	0	0	0	2098600	2021000	77623	0	0	0	8018	2061	7579	49616	67217	67217	2127		1	
DKWDELK	2	Unmodified	932.46035	0.46034682	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	28.785	27.485	3	0.010866	23103	160511_QHF_FH_JSI12i_2	45.68	34.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8019	155	7580	49617	67218	67218			1	
DKWLCPLSGK	2	Acetyl (K)	1244.6223	0.62234354	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		76.219	65.45	2	0.0056849	35205	160513_QHF_FH_JSI11Kac_4	74.841	55.054			0.092017	0.091296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.092017	0.091296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3043700	2780300	263430	0	0	0	0	0	0	3043700	2780300	263430	0	0	0	8020	4521	7581	49618	67219	67219	3177		1	
DKWSPALQIR	1	Acetyl (K)	1254.6721	0.67207093	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	76.22	65.65	2	0.015235	35127	160513_QHF_FH_JSI12Kac_4	55.567	29.629			1.1089	1.2464	106.95	2	1	Median	NaN	NaN	NaN	0	0	Median	2.2662	2.6553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54257	0.5851	NaN	1	0	Median	11398000	6258600	5139800	0	0	0	5194200	2127700	3066600	0	0	0	6204200	4130900	2073300	8021	1937	7582	49619;49620	67220;67221;67222	67222	1946		3	
DKYEPAAVSEQGDKK	3	Unmodified	1663.8053	0.80532952	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	16.047	16.073	3	0.001571	13185	160511_QHF_FH_JSI11i_3	71.344	59.143			0.48764	0.47829	101.83	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24797	0.23281	NaN	1	1	Median	0.95897	0.98262	NaN	1	1	Median	74236000	40786000	33449000	0	0	0	0	0	0	58679000	38019000	20660000	15557000	2767600	12789000	8022	821	7583	49621;49622	67223;67224	67223			2	
DKYGPPVR	1	Acetyl (K)	972.50288	0.50288033	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	1	0	0	1			By MS/MS		13.5	0.5						1	1					2		37.171	27.955	2	0.012343	16944	160513_QHF_FH_JSI11Kac_4	71.379	36.572			0.45529	0.44812	0.50577	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45529	0.44812	0.50577	2	0	Median	NaN	NaN	NaN	0	0	Median	28953000	19854000	9098300	0	0	0	0	0	0	28953000	19854000	9098300	0	0	0	8023	2378	7584	49623;49624	67225;67226;67227	67227	2445		3	
DKYGVFPLR	1	Acetyl (K)	1135.6026	0.60259438	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.973	67.363	2	0.003615	35805	160513_QHF_FH_JSI11Kac_5	78.516	43.708			0.32527	0.31838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32527	0.31838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3266500	2425700	840760	0	0	0	0	0	0	3266500	2425700	840760	0	0	0	8024	999	7585	49625	67228	67228	793		1	
DKYPNLQVIGGNVVTAAQAK	2	Unmodified	2085.1219	0.12185306	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.61	3	2	6					1		2	3	5	2	73.912	72.538	2;3	4.6111E-11	65366	160511_QHF_FH_JSI11i_3	127.37	118.54			0.9754	1.1141	44.366	12	5	Median	1.4929	1.2303	6.5709	2	1	Median	0.97976	1.1047	32.762	3	0	Plateau	0.97105	0.92025	52.875	5	3	Median	0.62505	0.63779	27.822	2	1	Median	2106600000	1136400000	970200000	313210000	133820000	179390000	621600000	378970000	242640000	809130000	413310000	395820000	362690000	210330000	152350000	8025	1015	7586	49626;49627;49628;49629;49630;49631;49632;49633;49634;49635;49636;49637	67229;67230;67231;67232;67233;67234;67235;67236;67237;67238;67239;67240;67241;67242;67243;67244;67245;67246;67247;67248;67249;67250;67251;67252;67253	67231			24	
DLAACIK	1	Unmodified	789.40547	0.40547447	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	2	2	33.692	33.111	2	0.0112	29455	160511_QHF_FH_JSI11i_1	62.714	19.648			1.5232	1.6034	134.1	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5232	1.6034	134.1	2	2	Median	263430000	107850000	155580000	0	0	0	0	0	0	0	0	0	263430000	107850000	155580000	8026	576	7587	49638;49639;49640;49641;49642	67254;67255;67256;67257;67258	67254			5	
DLAAFDK	1	Unmodified	778.38612	0.38611924	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	2	2	2	42.835	40.806	2	0.014083	37278	160511_QHF_FH_JSI12i_1	67.981	14.427			25.497	25.169	347.58	7	7	Median	43.243	35.265	NaN	1	1	Median	1.9212	2.2681	581.2	2	2	Median	7.7185	7.6846	167.78	2	2	Median	1.5003	1.5694	528.57	2	2	Median	618210000	248720000	369490000	81309000	1638700	79670000	222450000	131460000	90991000	94665000	9101200	85564000	219780000	106520000	113260000	8027	943	7588	49643;49644;49645;49646;49647;49648;49649	67259;67260;67261;67262;67263;67264;67265;67266	67262			8	
DLAAFDKSHDQAVR	1	Acetyl (K)	1613.7798	0.77978347	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	58.398	47.624	2;3	0.0013817	26814	160513_QHF_FH_JSI12Kac_4	89.548	67.502			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6245900	2225400	4020500	0	0	0	4020500	0	4020500	1063400	1063400	0	1161900	1161900	0	8028	943	7589	49650;49651;49652;49653	67267;67268;67269;67270	67269	708		4	
DLAALGDK	1	Unmodified	801.42323	0.42323303	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.675	36.064	2	0.0072426	32115	160511_QHF_FH_JSI10i_1	69.598	14.822			0.35044	0.30867	275.2	4	4	Median	2.8593	2.3099	NaN	1	1	Median	5.3002	6.2326	NaN	1	1	Median	0.04295	0.041248	NaN	1	1	Median	0.026892	0.028452	NaN	1	1	Median	124270000	77792000	46476000	26572000	5670300	20902000	28466000	6701500	21764000	33206000	31214000	1991600	36024000	34206000	1818000	8029	2470	7590	49654;49655;49656;49657	67271;67272;67273;67274	67273			4	
DLADELALVDVIEDK	1	Unmodified	1656.8458	0.84579735	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.24	1.5	192	9	6						2	57	47	52	53	108.43	108.27	2;3	4.6923E-184	92870	160511_QHF_FH_JSI10i_1	321.03	295.65			0.96061	0.94725	20.708	141	55	Median	1.1104	0.98078	19.744	41	21	Median	0.84914	0.90299	20.357	29	7	Median	0.95899	0.92499	16.571	40	17	Median	0.93361	1.0049	25.794	31	10	Median	27668000000	14145000000	13523000000	3365000000	1596000000	1769000000	9589700000	5066200000	4523500000	6992700000	3490400000	3502300000	7720600000	3992100000	3728400000	8030	761	7591	49658;49659;49660;49661;49662;49663;49664;49665;49666;49667;49668;49669;49670;49671;49672;49673;49674;49675;49676;49677;49678;49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691;49692;49693;49694;49695;49696;49697;49698;49699;49700;49701;49702;49703;49704;49705;49706;49707;49708;49709;49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724;49725;49726;49727;49728;49729;49730;49731;49732;49733;49734;49735;49736;49737;49738;49739;49740;49741;49742;49743;49744;49745;49746;49747;49748;49749;49750;49751;49752;49753;49754;49755;49756;49757;49758;49759;49760;49761;49762;49763;49764;49765;49766;49767;49768;49769;49770;49771;49772;49773;49774;49775;49776;49777;49778;49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789;49790;49791;49792;49793;49794;49795;49796;49797;49798;49799;49800;49801;49802;49803;49804;49805;49806;49807;49808;49809;49810;49811;49812;49813;49814;49815;49816;49817;49818;49819;49820;49821;49822;49823;49824;49825;49826;49827;49828;49829;49830;49831;49832;49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843;49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860;49861;49862;49863;49864;49865;49866	67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285;67286;67287;67288;67289;67290;67291;67292;67293;67294;67295;67296;67297;67298;67299;67300;67301;67302;67303;67304;67305;67306;67307;67308;67309;67310;67311;67312;67313;67314;67315;67316;67317;67318;67319;67320;67321;67322;67323;67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338;67339;67340;67341;67342;67343;67344;67345;67346;67347;67348;67349;67350;67351;67352;67353;67354;67355;67356;67357;67358;67359;67360;67361;67362;67363;67364;67365;67366;67367;67368;67369;67370;67371;67372;67373;67374;67375;67376;67377;67378;67379;67380;67381;67382;67383;67384;67385;67386;67387;67388;67389;67390;67391;67392;67393;67394;67395;67396;67397;67398;67399;67400;67401;67402;67403;67404;67405;67406;67407;67408;67409;67410;67411;67412;67413;67414;67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425;67426;67427;67428;67429;67430;67431;67432;67433;67434;67435;67436;67437;67438;67439;67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450;67451;67452;67453;67454;67455;67456;67457;67458;67459;67460;67461;67462;67463;67464;67465;67466;67467;67468;67469;67470;67471;67472;67473;67474;67475;67476;67477;67478;67479;67480;67481;67482;67483;67484;67485;67486;67487;67488	67381			207	
DLADIAAFFR	0	Unmodified	1137.5819	0.58185893	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.17	101.99	2	0.00033689	87948	160511_QHF_FH_JSI12i_2	87.308	45.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8031	591	7592	49867	67489	67489			1	
DLADVAAR	0	Unmodified	829.42938	0.42938104	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	29.445	28.645	2	0.0031394	24929	160511_QHF_FH_JSI9i_1	81.191	39.688			0.39843	0.40522	113.63	5	5	Median	1.2113	0.98971	157.13	2	2	Median	0.34816	0.40522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0216	1.0339	142.28	2	2	Median	595850000	313210000	282650000	229910000	93238000	136680000	137620000	96912000	40710000	0	0	0	228320000	123050000	105260000	8032	4456	7593	49868;49869;49870;49871;49872	67490;67491;67492;67493;67494	67494			5	
DLADVDLR	0	Unmodified	915.46616	0.46616048	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	48.752	48.089	2	0.005541	42692	160511_QHF_FH_JSI9i_1	62.546	26.361			0.20232	0.19961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20232	0.19961	NaN	1	1	Median	12190000	10294000	1896100	0	0	0	0	0	0	0	0	0	12190000	10294000	1896100	8033	4974	7594	49873;49874	67495;67496	67496			2	
DLAEDAPWK	1	Unmodified	1043.4924	0.49237523	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	2	1	3	54.355	53.692	2	1.9956E-06	48783	160511_QHF_FH_JSI12i_1	128.69	92.806			0.82969	0.9284	9.8537	4	0	Median	1.2193	0.9751	NaN	1	0	Median	0.8256	0.96173	NaN	1	0	Median	0.80275	0.78613	NaN	1	0	Median	0.8338	0.89622	NaN	1	0	Median	1373500000	679390000	694100000	251190000	102320000	148870000	379600000	190630000	188970000	346220000	165140000	181080000	396480000	221290000	175180000	8034	1192;512;2527	7595	49875;49876;49877;49878;49879;49880;49881	67497;67498;67499;67500;67501;67502;67503;67504;67505;67506	67499			10	
DLAEDAPWKK	2	Unmodified	1171.5873	0.58733824	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.32	3.89	4	9	4				1	1		5	5	6	3	45.471	43.622	2;3	2.5128E-08	39310	160511_QHF_FH_JSI10i_1	107.83	95.618			0.79992	0.87669	60.922	14	5	Median	0.47981	0.40337	128.87	2	1	Median	0.75182	0.88179	59.011	3	1	Median	0.74161	0.73917	44.322	6	3	Median	1.4062	1.4293	26.487	3	0	Plateau	3856000000	2614800000	1241100000	739690000	627790000	111900000	816550000	637960000	178590000	1803500000	1131800000	671750000	496210000	217300000	278910000	8035	1192;512;2527	7596	49882;49883;49884;49885;49886;49887;49888;49889;49890;49891;49892;49893;49894;49895;49896;49897;49898;49899;49900	67507;67508;67509;67510;67511;67512;67513;67514;67515;67516;67517;67518;67519;67520;67521;67522;67523;67524;67525;67526;67527;67528;67529;67530;67531	67516			24	
DLAEDLYDGQVLQK	1	Unmodified	1605.7886	0.78861683	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									4	1	2	2	78.496	77.891	2;3	2.0311E-24	69293	160511_QHF_FH_JSI9i_1	220.94	161.52			0.91841	0.93588	25.62	8	7	Median	1.1031	0.90299	21.778	4	4	Median	0.89252	1.0614	NaN	1	1	Median	0.75547	0.72839	20.169	2	1	Median	1.3168	1.3443	NaN	1	1	Median	503690000	233950000	269740000	191590000	94456000	97135000	60909000	29762000	31147000	138700000	77137000	61567000	112480000	32596000	79888000	8036	5028	7597	49901;49902;49903;49904;49905;49906;49907;49908;49909	67532;67533;67534;67535;67536;67537;67538;67539;67540;67541;67542	67542			11	
DLAEIGIAVGNNDVK	1	Unmodified	1526.794	0.79403655	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	75.835	75.41	2	1.0439E-06	68588	160511_QHF_FH_JSI12i_1	142.97	107.32			0.70241	0.74385	74.995	7	6	Median	0.3812	0.30976	NaN	1	1	Median	0.82583	0.92898	131.62	2	1	Median	0.76182	0.7308	53.796	2	2	Median	0.99366	1.0571	49.696	2	2	Median	151870000	92410000	59459000	10426000	8552300	1873500	56177000	34333000	21844000	40766000	25988000	14778000	44500000	23536000	20963000	8037	1400	7598	49910;49911;49912;49913;49914;49915;49916	67543;67544;67545;67546;67547;67548;67549;67550	67546			8	
DLAEITTLDR	0	Unmodified	1145.5928	0.59281755	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0		By MS/MS		By MS/MS	13.3	0.471						2	1				2		1	74.148	64.644	2	0.004808	32154	160513_QHF_FH_JSI10Kac_3	65.305	38.921			0.44691	0.50511	50.505	2	2	Median	NaN	NaN	NaN	0	0	Median	0.30301	0.35342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65913	0.72192	NaN	1	1	Median	4050900	2658300	1392500	0	0	0	2137500	1849300	288120	0	0	0	1913400	809000	1104400	8038	4390	7599	49917;49918;49919	67551;67552;67553	67553			3	
DLAEVGEGGGHSQAR	0	Unmodified	1481.6859	0.68588309	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	1	3	3	20.029	19.514	2;3	1.6048E-07	16379	160511_QHF_FH_JSI9i_2	93.011	65.682			1.4816	1.4489	153.07	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9261	3.8535	139.8	3	3	Median	0.30698	0.33552	NaN	1	1	Median	72749000	26312000	46437000	0	0	0	0	0	0	64428000	18807000	45621000	8320900	7504600	816320	8039	4581	7600	49920;49921;49922;49923;49924;49925;49926;49927	67554;67555;67556;67557;67558;67559;67560;67561	67557			8	
DLAFTLEER	0	Unmodified	1092.5451	0.54513908	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.223	64.592	2	0.00067613	58907	160511_QHF_FH_JSI12i_1	76.221	60.851			1.1772	1.2387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1772	1.2387	NaN	1	0	Median	38993000	23609000	15383000	0	0	0	0	0	0	0	0	0	38993000	23609000	15383000	8040	1616	7601	49928	67562;67563	67563			2	
DLAGEVEK	1	Unmodified	859.42871	0.42871234	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.4	4.8	4					1				1	2	2		28.734	26.085	2	0.0058914	23366	160511_QHF_FH_JSI10i_1	60.91	19.258			1.5734	1.6626	32.223	4	3	Median	2.9746	2.4448	NaN	1	1	Median	1.5476	1.7943	NaN	1	1	Median	1.346	1.3176	22.108	2	1	Median	NaN	NaN	NaN	0	0	Median	371500000	153360000	218140000	109740000	28487000	81248000	151110000	69505000	81603000	110660000	55366000	55289000	0	0	0	8041	369	7602	49929;49930;49931;49932;49933	67564;67565;67566;67567;67568	67567			5	
DLAGRLPAGPR	0	Unmodified	1121.6305	0.63054046	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			37.398	35.932	3	0.00012845	30008	160511_QHF_FH_JSI10i_3	76.282	61.344			1.1243	1.0756	4.4644	2	0	Median	1.3819	1.1101	NaN	1	0	Median	0.91466	1.0422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295410000	132210000	163200000	195300000	77202000	118100000	100110000	55008000	45098000	0	0	0	0	0	0	8042	4296	7603	49934;49935	67569;67570;67571;67572	67570			4	
DLAGSIIGK	1	Unmodified	872.49673	0.49673232	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.22	7	2	3			4	4	4		5	7	6	6	55.577	49.919	1;2	7.9461E-07	47348	160511_QHF_FH_JSI10i_1	152.63	68.387			0.98027	0.95424	39.727	23	8	Median	1.1761	0.96948	16.958	4	1	Median	0.86105	1.0353	66.141	7	5	Median	0.94637	0.92492	31.546	6	1	Median	0.88454	0.94239	22.027	6	1	Median	13117000000	6415500000	6701600000	3167100000	1413900000	1753100000	3638100000	1951900000	1686200000	3131300000	1586700000	1544600000	3180600000	1462900000	1717700000	8043	1975	7604	49936;49937;49938;49939;49940;49941;49942;49943;49944;49945;49946;49947;49948;49949;49950;49951;49952;49953;49954;49955;49956;49957;49958;49959	67573;67574;67575;67576;67577;67578;67579;67580;67581;67582;67583;67584;67585;67586;67587;67588;67589;67590;67591;67592;67593;67594;67595;67596;67597;67598;67599;67600;67601;67602;67603;67604;67605;67606;67607;67608;67609	67592			35	
DLAGSIIGKGGQR	1	Acetyl (K)	1312.7099	0.709913	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		68.479	57.456	2	0.034191	31807	160513_QHF_FH_JSI11Kac_4	51.927	31.056			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1460000	0	1460000	0	0	0	0	0	0	1460000	0	1460000	0	0	0	8044	1975	7605	49960	67610	67610			1	
DLAHTPSQLEGLDPATEAR	0	Unmodified	2019.9861	0.98614743	581	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		64.198	63.577	3	4.7013E-05	56500	160511_QHF_FH_JSI9i_1	53.625	44.341			1.1248	1.0276	6.7403	3	1	Plateau	1.1654	0.96969	NaN	1	0	Median	0.81953	0.96822	NaN	1	1	Median	1.1248	1.0889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	164770000	81250000	83522000	45315000	21197000	24118000	58710000	33019000	25691000	60748000	27034000	33714000	0	0	0	8045	581	7606	49961;49962;49963	67611;67612	67612			2	
DLAILQCHGELDPMVPVR	0	Unmodified	2062.034	0.033966025	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.377	90.89	3	0.00075328	79910	160511_QHF_FH_JSI11i_2	53.779	44.021			0.31156	0.32533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31156	0.32533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21708000	18488000	3220700	0	0	0	0	0	0	21708000	18488000	3220700	0	0	0	8046	685	7607	49964	67613	67613			1	
DLALAIR	0	Unmodified	770.46504	0.46503826	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.05	5.1	8	8	1				2	2		4	6	6	5	56.895	54.167	2	0.0049847	46449	160511_QHF_FH_JSI12i_2	105.27	0			0.42459	0.43467	104.27	19	19	Median	1.1564	0.96542	132.42	4	4	Median	0.43266	0.50239	111.53	6	6	Median	0.93979	0.91387	108.87	6	6	Median	0.30192	0.32278	40.425	3	3	Plateau	851400000	444010000	407390000	156600000	74233000	82362000	210010000	119580000	90434000	343230000	169720000	173520000	141560000	80476000	61083000	8047	1490	7608	49965;49966;49967;49968;49969;49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981;49982;49983;49984;49985	67614;67615;67616;67617;67618;67619;67620;67621;67622;67623;67624;67625;67626;67627;67628;67629;67630;67631;67632;67633;67634;67635	67617			22	
DLALVSR	0	Unmodified	772.4443	0.44430282	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	40.625	40.009	2	0.010478	36079	160511_QHF_FH_JSI10i_1	65.252	15.894			26.396	25.985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26.396	25.985	NaN	1	1	Median	28321000	17309000	11011000	0	0	0	0	0	0	0	0	0	28321000	17309000	11011000	8048	3028	7609	49986;49987;49988	67636;67637;67638	67638			3	
DLAMADLEQK	1	Unmodified	1132.5434	0.54342452	2329	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.626	53.964	2	0.0014953	48991	160511_QHF_FH_JSI12i_1	76.943	52.788			1.9083	1.9637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9083	1.9637	NaN	1	1	Median	71639000	20238000	51401000	0	0	0	0	0	0	0	0	0	71639000	20238000	51401000	8049	2329	7610	49989	67639	67639			1	
DLAMVASDMMVLLK	1	Unmodified	1535.7761	0.77614335	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.67	6.6		2							1	1		1	1	103.34	103.24	2	4.3906E-17	91116	160511_QHF_FH_JSI9i_2	132.32	96.363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40741000	40741000	0	0	0	0	0	0	0	40741000	40741000	0	0	0	0	8050	4836	7611	49990;49991;49992	67640;67641;67642	67640			3	
DLANDIMTLMSHTK	1	Unmodified	1588.7589	0.75891338	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	101.38	101.27	3	0.00034682	89823	160511_QHF_FH_JSI10i_2	52.254	46.091			1.0739	1.1436	14.562	4	0	Median	1.0841	0.9345	NaN	1	0	Median	1.0639	1.2845	NaN	1	0	Median	1.0468	1.0612	NaN	1	0	Median	1.1065	1.2324	NaN	1	0	Median	476540000	228710000	247840000	77398000	38548000	38850000	116640000	46522000	70116000	111140000	55853000	55285000	171370000	87785000	83585000	8051	179	7612	49993;49994;49995;49996	67643	67643			1	
DLANIAEVEVSIPAK	1	Unmodified	1567.8457	0.84573777	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									1	4	1	4	88.033	87.677	2;3	1.53E-06	79701	160511_QHF_FH_JSI10i_1	147.18	122.89			1.8011	1.7616	90.226	10	10	Median	1.9074	1.5559	NaN	1	1	Median	0.83312	0.98451	120.34	4	4	Median	3.6227	3.4514	NaN	1	1	Median	1.2565	1.2725	78.652	4	4	Median	360650000	165970000	194680000	16678000	4520000	12158000	169550000	85033000	84517000	22148000	6445100	15703000	152270000	69971000	82300000	8052	2147	7613	49997;49998;49999;50000;50001;50002;50003;50004;50005;50006	67644;67645;67646;67647;67648;67649;67650;67651;67652;67653;67654	67653			11	
DLANLEVPHELPTK	1	Unmodified	1574.8304	0.83042206	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	1	3	1	68.634	67.987	2;3	6.7061E-05	59455	160511_QHF_FH_JSI11i_2	116.24	101.55			1.5383	1.72	79.633	6	5	Median	1.1229	0.9969	NaN	1	0	Median	1.4483	1.7699	NaN	1	1	Median	0.47529	0.4796	121.84	3	3	Plateau	1.6338	1.6714	NaN	1	1	Median	247710000	113050000	134660000	48385000	23954000	24431000	44974000	17856000	27119000	127970000	61580000	66393000	26377000	9655600	16722000	8053	3813	7614	50007;50008;50009;50010;50011;50012;50013	67655;67656;67657;67658;67659;67660;67661;67662	67660			8	
DLANTGK	1	Unmodified	717.36572	0.36571815	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	8.5937	8.2335	2	0.015081	6072	160511_QHF_FH_JSI11i_1	57.281	24.81			2.2503	2.2824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2503	2.2824	NaN	1	1	Median	177920000	65716000	112200000	0	0	0	0	0	0	0	0	0	177920000	65716000	112200000	8054	3328	7615	50014;50015	67663;67664	67663			2	
DLAPGIADSLR	0	Unmodified	1126.5982	0.59823728	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	62.22	61.361	2	0.014587	54488	160511_QHF_FH_JSI9i_1	63.32	39.165			1.0284	0.96074	10.402	2	2	Median	1.0916	0.89261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96884	1.0341	NaN	1	1	Median	133760000	80942000	52823000	73041000	40907000	32134000	0	0	0	0	0	0	60724000	40034000	20689000	8055	4816	7616	50016;50017	67665;67666	67666			2	
DLAPIGIR	0	Unmodified	853.50215	0.50215205	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							3	2	3	2	54.877	54.029	2	0.00027729	48805	160511_QHF_FH_JSI10i_1	114.02	10.737			0.88593	0.92921	43.273	9	3	Median	1.2207	1.0115	33.666	3	0	Plateau	0.85866	1.0367	NaN	1	0	Median	0.87907	0.85101	78.169	3	2	Median	0.91413	0.99033	9.0093	2	1	Median	4055700000	1876300000	2179400000	868940000	362160000	506780000	619140000	348660000	270490000	1681600000	716500000	965080000	886080000	448990000	437090000	8056	4304	7617	50018;50019;50020;50021;50022;50023;50024;50025;50026;50027	67667;67668;67669;67670;67671;67672;67673;67674;67675;67676;67677;67678;67679;67680;67681	67673			15	
DLAPYLPSVTPGLK	1	Unmodified	1469.813	0.81298108	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.591	12	6	1							6	4	4	5	89.902	89.379	2;3	0.00011936	81479	160511_QHF_FH_JSI12i_1	103.34	90.765			0.95191	0.95635	53.987	19	15	Median	1.0811	0.94904	27.967	6	5	Median	0.85834	1.0109	57.308	4	3	Median	0.7551	0.73696	60.848	4	3	Median	0.9327	0.95635	80.065	5	4	Median	745560000	367960000	377600000	181720000	88014000	93711000	198410000	109520000	88886000	190970000	94121000	96848000	174460000	76307000	98155000	8057	3860	7618	50028;50029;50030;50031;50032;50033;50034;50035;50036;50037;50038;50039;50040;50041;50042;50043;50044;50045;50046	67682;67683;67684;67685;67686;67687;67688;67689;67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702;67703	67692			22	
DLAQDEAVWLER	0	Unmodified	1443.6994	0.69940789	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	76.881	76.404	2	2.2204E-06	69602	160511_QHF_FH_JSI12i_1	101.35	74.835			1.3759	1.284	14.999	4	2	Median	1.3362	1.097	NaN	1	1	Median	1.031	1.1928	NaN	1	0	Median	1.4168	1.3821	NaN	1	0	Median	1.4268	1.5355	NaN	1	1	Median	153200000	63502000	89698000	33968000	15372000	18595000	38726000	20336000	18389000	43463000	14111000	29353000	37044000	13683000	23361000	8058	1320	7619	50047;50048;50049;50050;50051;50052	67704;67705;67706;67707;67708;67709;67710	67706			7	
DLAQINDLQAQLEEANK	1	Unmodified	1911.9538	0.95378467	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				86.797	85.973	3	0.00071964	76533	160511_QHF_FH_JSI9i_1	61.648	37.09			1.8727	1.6568	NaN	1	1	Median	1.8727	1.6568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5146900	1436200	3710800	5146900	1436200	3710800	0	0	0	0	0	0	0	0	0	8059	3858	7620	50053	67711	67711			1	
DLAQYDAAHHEEFK	1	Unmodified	1672.7481	0.74814899	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.097	35.663	2	0.00058007	30412	160511_QHF_FH_JSI11i_2	68.536	62.152			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8060	2195	7621	50054	67712	67712			1	
DLAQYSSNDAVVETSLTK	1	Unmodified	1939.9375	0.93746591	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	67.992	67.189	2	4.8251E-11	61284	160511_QHF_FH_JSI12i_1	142.57	126.32			0.42117	0.39733	49.878	2	2	Median	0.33478	0.27924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52986	0.56536	NaN	1	1	Median	45719000	30691000	15028000	23396000	15805000	7590300	0	0	0	0	0	0	22324000	14886000	7438100	8061	2620	7622	50055;50056	67713;67714	67713			2	
DLASVNNLLK	1	Unmodified	1085.6081	0.60807369	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	72.338	71.765	2	9.3747E-05	65208	160511_QHF_FH_JSI10i_1	100.84	62.417			0.55865	0.4528	91.781	3	3	Median	0.55865	0.4528	NaN	1	1	Median	0.3838	0.45079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1465	2.2148	NaN	1	1	Median	159520000	94040000	65480000	48887000	28468000	20419000	58294000	42414000	15880000	0	0	0	52339000	23157000	29181000	8062	2470	7623	50057;50058;50059	67715;67716;67717	67716			3	
DLASVNNLLKK	2	Acetyl (K)	1255.7136	0.71360139	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	1	0	0	1			By MS/MS		13.5	0.5						1	1					2		80.002	70.382	2	0.0015122	36851	160513_QHF_FH_JSI11Kac_4	85.731	38.533			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1369000	1369000	0	0	0	0	0	0	0	1369000	1369000	0	0	0	0	8063	2470	7624	50060;50061	67718;67719	67719	2489		2	
DLASVQALLR	0	Unmodified	1084.6241	0.6240581	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.213	84.62	2	0.0092089	74599	160511_QHF_FH_JSI11i_2	58.981	22.585			0.59556	0.59412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59556	0.59412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25680000	17050000	8630000	0	0	0	0	0	0	25680000	17050000	8630000	0	0	0	8064	2470	7625	50062	67720	67720			1	
DLASVSLK	1	Unmodified	831.47018	0.47018322	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		45.023	44.215	2	0.011949	39287	160511_QHF_FH_JSI9i_1	62.546	23.755			4.2572	3.8351	76.354	2	2	Median	7.887	6.5803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2979	2.2351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70415000	17774000	52641000	27346000	2089400	25257000	0	0	0	43068000	15684000	27384000	0	0	0	8065	4096	7626	50063;50064	67721;67722	67722			2	
DLASYLNYK	1	Unmodified	1085.5393	0.53932542	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10	6.38	2						2	2		2	2	2		76.145	67.48	2	0.00031657	62316	160511_QHF_FH_JSI9i_1	92.439	71.814			1.2619	0.99045	62.334	5	4	Median	1.2619	0.99045	NaN	1	1	Median	1.5365	1.7928	84.918	2	1	Median	0.93587	0.89333	54.755	2	2	Median	NaN	NaN	NaN	0	0	Median	36011000	14828000	21183000	25926000	9471800	16454000	5273700	2489100	2784600	4811700	2866700	1945000	0	0	0	8066	3074	7627	50065;50066;50067;50068;50069;50070	67723;67724;67725;67726;67727;67728	67725			6	
DLATALEQLLQAYPR	0	Unmodified	1700.9097	0.90973501	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.14	0.35		6	1							1	1	2	3	103.33	103.24	2;3	4.6656E-09	89087	160511_QHF_FH_JSI12i_2	138.24	94.339			0.88322	0.97354	18.676	7	0	Median	1.1792	1.0342	NaN	1	0	Median	0.57383	0.6904	NaN	1	0	Median	0.86925	0.87113	15.719	2	0	Median	0.94583	0.99981	22.548	3	0	Plateau	198890000	98773000	100120000	17928000	7638800	10289000	25698000	15169000	10528000	100890000	47622000	53272000	54369000	28343000	26026000	8067	1868	7628	50071;50072;50073;50074;50075;50076;50077	67729;67730;67731;67732;67733	67731			4	
DLATFLYHLR	0	Unmodified	1247.6663	0.66625727	5314	Q9UHW9	SLC12A6	Solute carrier family 12 member 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		1	2	2	92.773	90.697	3	2.1116E-05	81089	160511_QHF_FH_JSI12i_3	85.533	55.766			0.99823	0.92499	74.093	5	3	Median	NaN	NaN	NaN	0	0	Median	0.7294	0.80417	NaN	1	1	Median	1.7908	1.6895	85.193	2	1	Median	0.6812	0.73985	83.75	2	1	Median	49115000	22833000	26282000	0	0	0	2535600	1402500	1133100	23604000	8820500	14784000	22975000	12610000	10366000	8068	5314	7629	50078;50079;50080;50081;50082	67734;67735;67736;67737;67738;67739	67737			6	
DLATPVMQPCTALDSHK	1	Unmodified	1882.8917	0.89171846	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.615	61.177	3	0.0025019	55543	160511_QHF_FH_JSI11i_1	50.053	39.996			0.62876	0.61742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62876	0.61742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41711000	25010000	16701000	0	0	0	0	0	0	41711000	25010000	16701000	0	0	0	8069	5011	7630	50083	67740	67740			1	
DLATVAFCDAQSTQEIHEK	1	Unmodified	2161.995	0.99499756	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			67.514	66.696	3	0.0083036	59213	160511_QHF_FH_JSI10i_2	39.387	32.951			0.8973	1.1539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8973	1.1539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12611000	9585200	3025500	0	0	0	12611000	9585200	3025500	0	0	0	0	0	0	8070	1882	7631	50084	67741	67741			1	
DLAVENPVK	1	Unmodified	983.52876	0.52876073	5498	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	42.295	41.081	2	0.0024991	37489	160511_QHF_FH_JSI12i_1	64.711	48.172			2.2568	1.8464	NaN	1	1	Median	2.2568	1.8464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17082000	4911100	12171000	17082000	4911100	12171000	0	0	0	0	0	0	0	0	0	8071	5498	7632	50085;50086	67742;67743	67742			2	
DLAVFLYHLR	0	Unmodified	1245.687	0.68699271	5456	Q9UP95	SLC12A4	Solute carrier family 12 member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	3	2	4	2	88.509	80.829	2;3	1.8508E-26	43533	160513_QHF_FH_JSI9Kac_6	162.88	139.73			0.40931	0.41644	168.67	8	8	Median	0.24813	0.21456	169.17	3	3	Median	0.67519	0.80829	NaN	1	1	Median	1.0727	1.0067	254.61	2	2	Median	0.28547	0.30288	245.41	2	2	Median	648520000	389250000	259280000	282780000	174090000	108700000	140170000	81916000	58259000	118310000	62942000	55373000	107250000	70302000	36949000	8072	5456	7633	50087;50088;50089;50090;50091;50092;50093;50094;50095;50096;50097	67744;67745;67746;67747;67748;67749;67750;67751;67752;67753;67754	67748			11	
DLAVHIAHSLR	0	Unmodified	1230.6833	0.68330431	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	42.062	41.95	3;4	0.00087407	35872	160511_QHF_FH_JSI12i_3	44.299	38.266			1.1048	1.0723	22.768	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0938	1.0329	12.646	2	0	Median	1.2341	1.269	31.167	2	0	Median	140020000	67916000	72103000	0	0	0	0	0	0	55834000	26505000	29329000	84185000	41411000	42774000	8073	4417	7634	50098;50099;50100;50101	67755;67756;67757;67758;67759	67757			3	
DLAVPAALTPR	0	Unmodified	1122.6397	0.63970816	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	67.209	66.76	2	0.0017038	60690	160511_QHF_FH_JSI11i_1	61.65	38.221			0.87241	0.8316	45.001	3	1	Median	NaN	NaN	NaN	0	0	Median	0.35972	0.40787	NaN	1	1	Median	0.87241	0.8316	NaN	1	0	Median	0.89842	0.93777	NaN	1	0	Median	109150000	64387000	44762000	0	0	0	31808000	21229000	10579000	39091000	21183000	17908000	38250000	21975000	16275000	8074	3734	7635	50102;50103;50104	67760;67761;67762;67763;67764	67761			5	
DLCGIVASK	1	Unmodified	961.49027	0.49026674	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	47.004	46.328	2	0.00016305	42078	160511_QHF_FH_JSI12i_1	105.52	73.05			3.3648	3.0659	114.78	5	5	Median	3.7413	3.0659	NaN	1	1	Median	3.3648	3.9859	NaN	1	1	Median	2.4588	2.3959	NaN	1	1	Median	0.91926	0.95536	186.93	2	2	Median	369520000	155840000	213680000	53036000	14145000	38890000	61496000	24757000	36739000	126210000	53518000	72692000	128780000	63419000	65360000	8075	1029	7636	50105;50106;50107;50108;50109	67765;67766;67767;67768;67769	67766			5	
DLCNTHLMR	0	Unmodified	1158.5274	0.5273973	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	30.907	29.599	2	0.00034833	24920	160511_QHF_FH_JSI12i_2	91.853	57.029			1.7316	1.8859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7316	1.8859	NaN	1	1	Median	33109000	11606000	21503000	0	0	0	0	0	0	0	0	0	33109000	11606000	21503000	8076	2094	7637	50110;50111	67770;67771	67770			2	
DLDDALDK	1	Unmodified	903.41854	0.41854158	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.09	5.05	8				2	1				2	2	2	5	37.416	35.89	2	0.0010276	31724	160511_QHF_FH_JSI9i_1	114.5	82.027			3.6863	3.8037	147.81	9	9	Median	1.5404	1.2608	161.19	2	2	Median	0.84337	0.98571	208.06	2	2	Median	1.0079	0.99123	190.18	2	2	Median	0.83623	0.8924	181.57	3	3	Plateau	2610100000	1289700000	1320500000	391830000	126070000	265750000	725120000	389240000	335880000	792730000	394630000	398100000	700440000	379720000	320720000	8077	1181	7638	50112;50113;50114;50115;50116;50117;50118;50119;50120;50121;50122	67772;67773;67774;67775;67776;67777;67778;67779;67780;67781;67782	67779			11	
DLDELSRYPEDK	1	Unmodified	1478.6889	0.68890278	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.442	11	4								3	4	5	3	48.837	48.188	2;3	4.3703E-05	43800	160511_QHF_FH_JSI12i_1	101.39	93.666			0.42205	0.39373	139.78	14	13	Median	1.7437	1.5396	65.456	3	2	Median	0.19538	0.23681	159.19	4	4	Median	0.42205	0.41051	171.66	4	4	Median	0.2297	0.24453	187.6	3	3	Median	3103900000	1673700000	1430300000	241640000	106410000	135240000	713160000	464350000	248810000	1113100000	526190000	586930000	1036000000	576730000	459280000	8078	1556	7639	50123;50124;50125;50126;50127;50128;50129;50130;50131;50132;50133;50134;50135;50136;50137	67783;67784;67785;67786;67787;67788;67789;67790;67791;67792;67793;67794;67795;67796;67797;67798;67799;67800	67788			18	
DLDESSGVR	0	Unmodified	976.44615	0.44615331	5182	Q9P0J7	KCMF1	E3 ubiquitin-protein ligase KCMF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		16.414	15.936	2	0.00082248	13111	160511_QHF_FH_JSI9i_1	84.743	62.251			3.5103	3.6397	33.09	3	3	Median	2.5871	2.2109	NaN	1	1	Median	3.5103	4.1354	NaN	1	1	Median	3.7598	3.6397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	182420000	63983000	118440000	65491000	24051000	41440000	56139000	21925000	34214000	60789000	18008000	42781000	0	0	0	8079	5182	7640	50138;50139;50140	67801;67802;67803	67803			3	
DLDEVLQTHSVFVNVSK	1	Unmodified	1928.9844	0.98435652	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.4	0.49		3	2									2	3	87.008	86.525	2;3	4.7354E-06	76242	160511_QHF_FH_JSI11i_2	98.796	82.267			0.65011	0.69849	72.532	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80984	0.80201	66.403	2	2	Median	0.47203	0.50469	89.75	3	3	Plateau	140900000	79831000	61072000	0	0	0	0	0	0	64382000	34327000	30054000	76521000	45504000	31017000	8080	5569	7641	50141;50142;50143;50144;50145	67804;67805;67806;67807;67808	67806			5	
DLDFANDASK	1	Unmodified	1094.488	0.48801813	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.263	42.045	2	0.00106	37297	160511_QHF_FH_JSI9i_1	79.489	67.133			4.1865	3.4107	NaN	1	1	Median	4.1865	3.4107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34812000	10269000	24543000	34812000	10269000	24543000	0	0	0	0	0	0	0	0	0	8081	2549	7642	50146	67809	67809			1	
DLDFEKAK	2	Acetyl (K)	1006.4971	0.49712625	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	1	0	0	1			By MS/MS		13	0						1						1		56.751	47.162	2	0.013643	25290	160513_QHF_FH_JSI11Kac_3	74.301	37.541			0.021036	0.020545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.021036	0.020545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9189100	9136900	52120	0	0	0	0	0	0	9189100	9136900	52120	0	0	0	8082	334;2217	7643	50147	67810	67810	171		1	
DLDGFRK	1	Unmodified	849.43447	0.43446642	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		2	2								2		2	23.119	22.675	2;3	0.027652	18571	160511_QHF_FH_JSI12i_3	64.803	35.465			2.5815	2.8941	177.69	4	4	Median	NaN	NaN	NaN	0	0	Median	0.55959	0.68491	191.77	2	2	Median	NaN	NaN	NaN	0	0	Median	6.1604	6.2222	96.206	2	2	Median	468330000	182380000	285950000	0	0	0	204830000	120910000	83916000	0	0	0	263500000	61468000	202030000	8083	2772	7644	50148;50149;50150;50151	67811;67812;67813;67814	67813			4	
DLDIFDR	0	Unmodified	892.42905	0.42904669	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.058	67.444	2	0.030259	61454	160511_QHF_FH_JSI12i_1	54.157	22.222			0.45615	0.47613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45615	0.47613	NaN	1	1	Median	38253000	24627000	13626000	0	0	0	0	0	0	0	0	0	38253000	24627000	13626000	8084	2508	7645	50152	67815	67815			1	
DLDIIDNYDYSHTVK	1	Unmodified	1809.8421	0.84210896	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1									2	3	2	71.21	70.783	2;3	9.4984E-52	64346	160511_QHF_FH_JSI11i_1	216.06	182.1			1.3877	1.4942	13.265	7	1	Median	NaN	NaN	NaN	0	0	Median	1.3911	1.6394	11.158	2	0	Median	1.5137	1.4942	12.361	3	1	Median	1.2412	1.2898	6.5679	2	0	Median	677130000	288680000	388460000	0	0	0	217560000	90461000	127100000	256800000	119650000	137150000	202770000	78566000	124200000	8085	512	7646	50153;50154;50155;50156;50157;50158;50159	67816;67817;67818;67819;67820;67821;67822;67823	67817			8	
DLDIYYK	1	Unmodified	928.4542	0.45419881	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.151	52.744	2	0.0088682	48102	160511_QHF_FH_JSI12i_1	70.912	38.442			2.5258	2.6247	12.509	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5451	2.8675	NaN	1	1	Median	2.5066	2.4026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69903000	23683000	46220000	0	0	0	33935000	12120000	21814000	35968000	11563000	24406000	0	0	0	8086	3896	7647	50160;50161;50162;50163	67824;67825;67826;67827	67825			4	
DLDKDDFLGR	1	Unmodified	1192.5724	0.57241646	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	48.386	47.843	3	0.0073302	43077	160511_QHF_FH_JSI10i_1	48.998	31.831			0.27132	0.29434	28.938	2	2	Median	NaN	NaN	NaN	0	0	Median	0.3081	0.36118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23892	0.23987	NaN	1	1	Median	26417000	19518000	6898600	0	0	0	16653000	11860000	4792800	0	0	0	9763900	7658200	2105800	8087	4399	7648	50164;50165	67828;67829	67829			2	
DLDPEVFQR	0	Unmodified	1117.5404	0.54038805	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.445	56.793	2	0.00010355	51470	160511_QHF_FH_JSI11i_1	93.429	53.16			0.9954	1.0588	33.035	4	1	Median	1.5386	1.2698	NaN	1	0	Median	1.0345	1.2063	NaN	1	0	Median	0.95774	0.92939	NaN	1	0	Median	0.59275	0.61645	NaN	1	1	Median	246850000	121770000	125080000	56649000	25124000	31525000	72233000	36165000	36068000	76092000	35408000	40684000	41877000	25074000	16803000	8088	2947	7649	50166;50167;50168;50169	67830;67831;67832;67833;67834;67835;67836	67831			7	
DLDPIGK	1	Unmodified	756.40177	0.4017693	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	35.738	35.072	2	0.010534	31537	160511_QHF_FH_JSI12i_1	74.415	62.853			0.69312	0.69777	103.29	4	3	Median	2.9451	2.4512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3917	0.37792	NaN	1	1	Median	0.56441	0.59099	110.21	2	1	Median	590590000	318850000	271740000	150000000	61318000	88684000	0	0	0	158410000	102760000	55647000	282170000	154770000	127410000	8089	3766	7650	50170;50171;50172;50173	67837;67838;67839;67840	67838			4	
DLDQASLAAVSQQLAPR	0	Unmodified	1781.9272	0.92717599	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	84.417	83.961	2;3	8.2874E-16	74561	160511_QHF_FH_JSI9i_1	193.06	156.48			1.2003	1.0461	16.404	7	2	Median	1.2416	1.0153	4.2205	2	1	Median	0.81981	0.97915	14.052	2	0	Median	1.0715	1.0251	18.144	2	1	Median	1.3373	1.4272	NaN	1	0	Median	574540000	258790000	315750000	157940000	68765000	89178000	153210000	88689000	64518000	155450000	60348000	95106000	107930000	40986000	66945000	8090	5616	7651	50174;50175;50176;50177;50178;50179;50180	67841;67842;67843;67844;67845;67846;67847;67848;67849;67850;67851;67852	67851			12	
DLDQCRDGK	1	Unmodified	1105.4822	0.48222124	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	7.9538	7.6523	2	0.00018105	5447	160511_QHF_FH_JSI10i_1	128	97.92			2.0853	2.0133	97.243	7	7	Median	2.4477	2.0133	NaN	1	1	Median	0.8641	1.005	127.9	2	2	Median	0.91548	0.9035	163.51	2	2	Median	1.0855	1.1231	95.128	2	2	Median	1193400000	594730000	598670000	75339000	20075000	55265000	334620000	164480000	170140000	382210000	211230000	170990000	401230000	198950000	202280000	8091	1923	7652	50181;50182;50183;50184;50185;50186;50187	67853;67854;67855;67856;67857;67858;67859	67857			7	
DLDSLHR	0	Unmodified	854.42463	0.42463001	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	18.549	17.756	2	0.01007	15139	160511_QHF_FH_JSI10i_2	81.613	44.585			3.3856	3.8247	139.79	6	6	Median	9.2049	8.1192	NaN	1	1	Median	1.0357	1.2772	150.95	2	2	Median	3.8487	3.939	NaN	1	1	Median	1.3473	1.5288	214.3	2	2	Median	876270000	344670000	531590000	100950000	11699000	89248000	246580000	132010000	114570000	279720000	87011000	192710000	249020000	113960000	135070000	8092	3603	7653	50188;50189;50190;50191;50192;50193	67860;67861;67862;67863;67864;67865	67865			6	
DLDSYLK	1	Unmodified	852.4229	0.42289868	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.954	52.182	2	0.017903	47025	160511_QHF_FH_JSI10i_1	60.76	0			1.3029	1.3985	61.834	5	3	Median	0.95194	0.78806	81.118	2	2	Median	1.3029	1.5429	NaN	1	0	Median	0.7557	0.72023	NaN	1	1	Median	1.9246	2.0039	NaN	1	0	Median	222590000	97959000	124630000	71483000	35442000	36041000	61755000	26555000	35199000	38329000	17999000	20330000	51021000	17963000	33058000	8093	21	7654	50194;50195;50196;50197;50198	67866;67867;67868;67869;67870	67868			5	
DLDTGEEVTR	0	Unmodified	1133.52	0.52004654	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		25.96	25.784	2	0.014039	22668	160511_QHF_FH_JSI11i_1	53.124	36.584			0.56061	0.52472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56061	0.52472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50576000	24790000	25787000	0	0	0	0	0	0	50576000	24790000	25787000	0	0	0	8094	2509	7655	50199	67871	67871			1	
DLDVAILVGSMPR	0	Unmodified	1384.7384	0.73843593	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	101.33	101.26	2;3	2.3691E-05	88925	160511_QHF_FH_JSI11i_2	71.806	55.669			1.1836	1.1892	26.248	4	0	Median	1.4832	1.2586	NaN	1	0	Median	0.82567	0.99537	17.141	2	0	Median	1.6332	1.6595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	158330000	77448000	80877000	29639000	12689000	16950000	94327000	54804000	39523000	34359000	9954600	24404000	0	0	0	8095	1503	7656	50200;50201;50202;50203;50204	67872;67873	67873			2	
DLDVITIPSK	1	Unmodified	1099.6125	0.61249036	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.113	70.581	2	0.0033239	64112	160511_QHF_FH_JSI11i_1	70.056	47.276			1.4796	1.3733	9.6882	4	4	Median	1.6531	1.3256	NaN	1	1	Median	1.1818	1.3767	NaN	1	1	Median	1.4141	1.37	NaN	1	1	Median	1.5481	1.6426	NaN	1	1	Median	195880000	109960000	85926000	41561000	23357000	18204000	51035000	33328000	17707000	60421000	31092000	29329000	42865000	22178000	20687000	8096	95	7657	50205;50206;50207;50208	67874;67875;67876;67877	67874			4	
DLDVSIK	1	Unmodified	788.42798	0.42798405	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	43.546	43.068	2	0.013252	38157	160511_QHF_FH_JSI9i_1	58.917	20.126			0.13482	0.144	121.94	6	6	Linear	NaN	NaN	NaN	0	0	Median	0.5631	0.66983	170.23	2	2	Median	0.89569	0.85914	93.401	2	2	Median	0.7709	0.79864	189.71	2	2	Median	337550000	197780000	139770000	0	0	0	115000000	65517000	49485000	121760000	74934000	46827000	100780000	57325000	43459000	8097	369	7658	50209;50210;50211;50212;50213;50214;50215	67878;67879;67880;67881;67882;67883;67884	67884			7	
DLDVVRR	0	Unmodified	871.48756	0.48756462	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		23.688	23.343	3	0.023509	19428	160511_QHF_FH_JSI11i_2	30.185	16.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8098	4463	7659	50216	67885	67885			1	
DLDYYGTLLK	1	Unmodified	1199.6074	0.60740498	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		78.264	77.932	2	5.5575E-09	70805	160511_QHF_FH_JSI10i_1	125.82	73.822			0.4257	0.41616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4257	0.41616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95727000	54786000	40942000	0	0	0	0	0	0	95727000	54786000	40942000	0	0	0	8099	2296	7660	50217;50218	67886;67887	67887			2	
DLEADEEDTR	0	Unmodified	1191.4891	0.48914034	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.374	18.893	2	0.00044308	16286	160511_QHF_FH_JSI12i_1	74.424	62.357			1.0129	1.0386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0129	1.0386	NaN	1	0	Median	97290000	56169000	41121000	0	0	0	0	0	0	0	0	0	97290000	56169000	41121000	8100	1169	7661	50219	67888	67888			1	
DLEADEEDTRK	1	Unmodified	1319.5841	0.58410336	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	15.225	14.881	2	0.00033032	12472	160511_QHF_FH_JSI10i_1	75.294	36.991			1.3074	1.4364	82.48	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67484	0.80163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.533	2.5737	NaN	1	1	Median	63490000	29394000	34096000	0	0	0	45156000	26510000	18646000	0	0	0	18334000	2883800	15451000	8101	1169	7662	50220;50221	67889;67890	67890			2	
DLEADEEDTRKK	2	Unmodified	1447.6791	0.67906638	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							2	4	5	5	12.195	11.92	2;3	3.3759E-06	9103	160511_QHF_FH_JSI12i_3	122.42	85.243			1.3003	1.2026	63.561	15	12	Median	1.7075	1.451	69.737	2	1	Median	1.9645	2.3576	79.342	4	4	Median	0.90867	0.93221	68.843	5	4	Median	1.2227	1.3283	37.346	4	3	Median	2106500000	894320000	1212200000	197700000	77699000	120010000	587350000	217120000	370230000	791200000	378080000	413110000	530250000	221420000	308830000	8102	1169	7663	50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237	67891;67892;67893;67894;67895;67896;67897;67898;67899;67900;67901;67902;67903;67904;67905;67906;67907;67908;67909	67907			19	
DLEADIIGDTSGHFQK	1	Unmodified	1744.8268	0.82679325	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	8	9								3	5	5	4	73.345	72.673	2;3	1.4046E-27	65952	160511_QHF_FH_JSI10i_1	146.07	102.99			0.78963	0.77153	23.049	13	7	Median	0.82976	0.71945	11.988	3	3	Median	0.63512	0.77153	7.5699	3	2	Median	0.67713	0.66631	24.333	4	1	Median	0.82813	0.90799	16.984	3	1	Plateau	614370000	351480000	262890000	68006000	31924000	36082000	141770000	85809000	55961000	283740000	168800000	114940000	120860000	64947000	55910000	8103	891	7664	50238;50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249;50250;50251;50252;50253;50254	67910;67911;67912;67913;67914;67915;67916;67917;67918;67919;67920;67921;67922;67923;67924;67925;67926;67927;67928;67929	67921			20	
DLEAEHVEVEDTTLNR	0	Unmodified	1868.8752	0.8752	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								4	3	2	2	51.567	50.802	2;3	1.5955E-40	45806	160511_QHF_FH_JSI10i_1	232.25	210.7			1.0131	0.99181	25.793	11	2	Median	1.1272	0.92225	44.993	4	2	Median	0.80878	1.0025	15.523	3	0	Median	1.0515	1.0242	2.1763	2	0	Median	0.90394	0.96523	3.8406	2	0	Median	4336700000	2029000000	2307700000	867180000	385860000	481320000	1183900000	562110000	621770000	1091000000	501180000	589850000	1194600000	579800000	614810000	8104	4695	7665	50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265	67930;67931;67932;67933;67934;67935;67936;67937;67938;67939;67940;67941;67942;67943;67944;67945;67946;67947;67948	67939			19	
DLEAEIHPLK	1	Unmodified	1163.6186	0.61863837	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	51.252	50.364	3	4.1882E-05	43409	160511_QHF_FH_JSI11i_2	93.058	83.869			1.523	1.3156	50.424	5	3	Median	1.5511	1.3156	NaN	1	0	Median	0.85768	1.0461	NaN	1	0	Median	0.87129	0.87751	84.469	2	2	Median	1.523	1.6581	NaN	1	1	Median	230150000	115660000	114500000	29106000	14394000	14712000	37928000	20789000	17139000	105430000	55175000	50257000	57687000	25297000	32390000	8105	4647	7666	50266;50267;50268;50269;50270	67949;67950;67951;67952;67953;67954;67955	67952			7	
DLEAHIDSANK	1	Unmodified	1211.5782	0.57823012	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.58	4.68	15	15					6			8	9	9	10	26.064	23.944	2;3	6.0955E-06	20931	160511_QHF_FH_JSI11i_1	114.4	82.467			0.79579	0.82623	81.329	36	34	Median	1.0298	0.89118	96.437	8	8	Median	0.53416	0.64027	85.541	9	8	Median	0.79833	0.80051	87.959	9	9	Median	0.84894	0.92794	69.895	10	9	Median	6250100000	3321700000	2928400000	1105400000	527950000	577450000	1526400000	771510000	754850000	2158900000	1181900000	976940000	1459400000	840280000	619170000	8106	1436	7667	50271;50272;50273;50274;50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285;50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297;50298;50299;50300;50301;50302;50303;50304;50305;50306	67956;67957;67958;67959;67960;67961;67962;67963;67964;67965;67966;67967;67968;67969;67970;67971;67972;67973;67974;67975;67976;67977;67978;67979;67980;67981;67982;67983;67984;67985;67986;67987;67988;67989;67990;67991;67992;67993;67994	67957			39	
DLEALLNSK	1	Unmodified	1001.5393	0.53932542	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.28	9	6	2			5	5	6		8	9	7	9	72.988	67.327	2	3.8983E-11	36157	160513_QHF_FH_JSI12Kac_4	154.49	85.574			1.2296	1.0135	249.23	29	28	Median	1.2296	1.0135	230.23	7	6	Median	0.32286	0.39579	255.66	8	8	Median	1.2186	1.2232	249	6	6	Median	0.44773	0.49461	296.99	8	8	Median	6745800000	3505400000	3240400000	1417400000	748190000	669170000	1947600000	1090700000	856910000	1841600000	897930000	943650000	1539300000	768600000	770690000	8107	791	7668	50307;50308;50309;50310;50311;50312;50313;50314;50315;50316;50317;50318;50319;50320;50321;50322;50323;50324;50325;50326;50327;50328;50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339	67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006;68007;68008;68009;68010;68011;68012;68013;68014;68015;68016;68017;68018;68019;68020;68021;68022;68023;68024;68025;68026;68027;68028;68029;68030;68031;68032;68033;68034;68035	68026			41	
DLEALMFDR	0	Unmodified	1108.5223	0.52229515	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.72	7	8	1					5		5	5	5	6	84.989	82.449	2	4.535E-08	75048	160511_QHF_FH_JSI10i_2	153.08	108.64			0.57929	0.53777	147.43	20	20	Median	0.64495	0.53621	151.89	5	5	Median	0.45957	0.53934	172.22	5	5	Median	0.42568	0.41899	158.91	5	5	Median	1.6378	1.7607	155.1	5	5	Median	2284800000	1152700000	1132000000	405160000	177030000	228130000	556170000	320080000	236090000	793710000	380400000	413310000	529720000	275220000	254500000	8108	1460	7669	50340;50341;50342;50343;50344;50345;50346;50347;50348;50349;50350;50351;50352;50353;50354;50355;50356;50357;50358;50359;50360	68036;68037;68038;68039;68040;68041;68042;68043;68044;68045;68046;68047;68048;68049;68050;68051;68052;68053;68054;68055;68056;68057;68058;68059;68060;68061;68062;68063;68064;68065;68066;68067;68068	68065			33	
DLEALVTDK	1	Unmodified	1002.5233	0.523341	2633	Q15124	PGM5	Phosphoglucomutase-like protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	70.986	70.6	2	0.001145	67121	160511_QHF_FH_JSI10i_1	79.906	25.357			0.1836	0.1773	18.794	4	4	Median	NaN	NaN	NaN	0	0	Median	0.20573	0.24255	NaN	1	1	Median	0.1836	0.17599	11.874	2	2	Median	0.15751	0.16423	NaN	1	1	Median	93407000	79550000	13857000	0	0	0	16346000	13690000	2655500	38579000	34099000	4480800	38482000	31761000	6720200	8109	2633	7670	50361;50362;50363;50364;50365;50366	68069;68070;68071;68072;68073;68074	68073			6	
DLEAPEVQESYR	0	Unmodified	1434.6627	0.66268803	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					1	1	2	52.13	47.337	2	4.6979E-06	42745	160511_QHF_FH_JSI10i_1	119.53	111.3			0.65158	0.70617	41.051	4	4	Median	NaN	NaN	NaN	0	0	Median	0.57552	0.69084	NaN	1	1	Median	0.73769	0.72185	NaN	1	1	Median	0.74016	0.7733	70.451	2	2	Median	256600000	157170000	99433000	0	0	0	127310000	85631000	41675000	127190000	70351000	56836000	2108800	1186500	922300	8110	1585	7671	50367;50368;50369;50370	68075;68076;68077;68078	68076			4	
DLEASHQHSSPNEQLK	1	Unmodified	1818.8497	0.84965395	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.163	16.89	3	0.00029526	13669	160511_QHF_FH_JSI11i_2	61.265	51.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8111	5208	7672	50371	68079	68079			1	
DLEASIAR	0	Unmodified	873.4556	0.45559579	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			13	0						1					1			41.591	32.637	2	0.012257	17821	160513_QHF_FH_JSI10Kac_3	73.26	23.902			0.43039	0.51175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43039	0.51175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1982400	1376500	605960	0	0	0	1982400	1376500	605960	0	0	0	0	0	0	8112	2517	7673	50372	68080	68080			1	
DLEDESTPIVK	1	Unmodified	1244.6136	0.61361257	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1					1	1	1	1	45.289	44.609	2	0.00011946	39607	160511_QHF_FH_JSI9i_1	96.89	84.664			1.1957	1.4148	35.126	3	3	Median	1.0144	0.82332	NaN	1	1	Median	1.1957	1.4148	NaN	1	1	Median	1.6367	1.5904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144100000	60000000	84100000	48691000	24695000	23996000	52888000	17490000	35398000	42521000	17815000	24706000	0	0	0	8113	4868	7674	50373;50374;50375;50376	68081;68082;68083;68084	68083			4	
DLEDIVGGGEYKPDK	2	Unmodified	1633.7835	0.78353145	3714	Q8TCZ2	CD99L2	CD99 antigen-like protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	59.896	59.24	2;3	0.002252	53823	160511_QHF_FH_JSI12i_1	60.657	46.574			1.746	1.8544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.746	1.8544	NaN	1	1	Median	36175000	13067000	23107000	0	0	0	0	0	0	0	0	0	36175000	13067000	23107000	8114	3714	7675	50377;50378	68085;68086	68085			2	
DLEDLFYK	1	Unmodified	1041.5019	0.50187728	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	81.163	80.648	2	0.0011606	71634	160511_QHF_FH_JSI9i_1	111.01	87.988			0.47212	0.56224	103.23	7	7	Median	1.0452	0.84442	114.98	2	2	Median	0.47212	0.56224	NaN	1	1	Median	0.9994	0.95869	146.07	2	2	Median	1.0669	1.1406	160.87	2	2	Median	324010000	177520000	146500000	89304000	51454000	37851000	37056000	23043000	14013000	118100000	59257000	58847000	79551000	43764000	35787000	8115	2376	7676	50379;50380;50381;50382;50383;50384;50385	68087;68088;68089;68090;68091;68092;68093;68094;68095;68096	68094			10	
DLEDLQILIK	1	Unmodified	1198.6809	0.68090428	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								2	3	2	3	98.413	98.254	2	1.4915E-06	89114	160511_QHF_FH_JSI12i_1	130.75	100.18			0.79166	0.706	216.47	8	8	Median	0.76894	0.61855	220.73	2	2	Median	0.76686	0.90164	314.53	2	2	Median	1.1291	1.1168	266.89	2	2	Median	1.1792	1.252	321.51	2	2	Median	297080000	153040000	144040000	32199000	17711000	14488000	125060000	70077000	54984000	54090000	25802000	28287000	85725000	39449000	46276000	8116	4315	7677	50386;50387;50388;50389;50390;50391;50392;50393;50394;50395	68097;68098;68099;68100;68101;68102;68103;68104;68105;68106;68107;68108;68109;68110	68103			14	
DLEDSLAR	0	Unmodified	917.44543	0.44542503	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	39.408	32.404	2	0.011304	29775	160511_QHF_FH_JSI12i_1	53.968	7.5421			1.031	1.0942	16.622	4	1	Median	1.3571	1.1232	NaN	1	1	Median	0.92287	1.066	NaN	1	0	Median	0.88755	0.85315	NaN	1	0	Median	1.1518	1.2696	NaN	1	0	Median	168160000	94374000	73788000	159500000	89856000	69643000	2108200	1262700	845470	4374200	2323900	2050300	2180600	931090	1249500	8117	791	7678	50396;50397;50398;50399;50400	68111;68112;68113;68114;68115	68111			5	
DLEDTEANK	1	Unmodified	1033.4564	0.45638365	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					2	3	2	1	15.606	12.628	2	9.4462E-06	11159	160511_QHF_FH_JSI10i_1	128.69	62.004			0.99692	1.0823	162.64	8	8	Median	0.90335	0.74433	230.88	2	2	Median	0.28246	0.33846	176.99	3	3	Median	4.785	4.5995	40.212	2	2	Median	0.23197	0.24953	NaN	1	1	Median	559700000	255980000	303720000	188950000	85419000	103530000	248420000	126860000	121560000	119480000	41449000	78036000	2844200	2257600	586590	8118	5479	7679	50401;50402;50403;50404;50405;50406;50407;50408	68116;68117;68118;68119;68120;68121;68122;68123	68118			8	
DLEEAEEYK	1	Unmodified	1124.4873	0.48734943	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	36.504	34.225	2	2.4784E-08	30967	160511_QHF_FH_JSI12i_1	157.68	142.9			4.9547	5.2544	265.23	9	9	Median	1.1019	0.90455	405.23	2	2	Median	0.75097	0.89597	328.81	2	2	Median	1.2994	1.2547	292.27	2	2	Median	4.9547	5.2544	311.67	3	3	Median	5467900000	2781200000	2686700000	1231700000	576100000	655620000	1599600000	972970000	626640000	1477900000	755070000	722830000	1158700000	477030000	681650000	8119	505	7680	50409;50410;50411;50412;50413;50414;50415;50416;50417;50418	68124;68125;68126;68127;68128;68129;68130;68131;68132;68133;68134;68135	68127			12	
DLEEAEEYKEAR	1	Acetyl (K)	1522.6787	0.67873203	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		60.286	50.676	2	0.017505	26777	160513_QHF_FH_JSI11Kac_3	74.162	55.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8120	505	7681	50419	68136	68136	253		1	
DLEEAEGR	0	Unmodified	917.40904	0.40903953	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	15.411	14.895	1;2	0.0012793	12500	160511_QHF_FH_JSI10i_1	107.9	22.63			0.6092	0.60432	111.87	6	5	Median	0.58608	0.49076	49.275	2	1	Median	0.93891	1.0881	103	2	2	Median	2.6145	2.5409	NaN	1	1	Median	0.13303	0.13723	NaN	1	1	Median	865670000	485650000	380020000	196290000	106680000	89601000	351610000	186130000	165480000	146580000	58271000	88309000	171190000	134570000	36624000	8121	1837	7682	50420;50421;50422;50423;50424;50425	68137;68138;68139;68140;68141;68142	68140			6	
DLEEDHACIPIK	1	Unmodified	1438.6762	0.67622961	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.74	7	1					3			1	4	2	4	50.668	47.295	2;3	7.4719E-06	42695	160511_QHF_FH_JSI11i_1	106.49	92.528			1.0421	1.0811	52.712	11	6	Median	0.81916	0.67886	NaN	1	0	Median	0.99846	1.1815	39.223	4	2	Median	1.0837	1.0469	55.073	2	1	Median	1.4266	1.5043	73.097	4	3	Median	2407100000	1118000000	1289100000	193630000	88943000	104680000	645460000	280430000	365030000	788610000	386160000	402450000	779420000	362440000	416980000	8122	1033	7683	50426;50427;50428;50429;50430;50431;50432;50433;50434;50435;50436	68143;68144;68145;68146;68147;68148;68149;68150;68151;68152;68153;68154;68155;68156;68157	68143			15	
DLEEDHACIPIKK	2	Unmodified	1566.7712	0.77119262	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	2.95	1	9	7					1		2	3	8	5	39.062	37.997	2;3;4	1.6857E-07	32509	160511_QHF_FH_JSI12i_2	109	96.119			0.55071	0.52443	93.508	16	14	Median	0.98836	0.85141	103.55	2	2	Median	0.36403	0.43455	100.58	3	3	Median	0.46854	0.46835	91.469	6	5	Median	1.071	1.2005	114.41	5	4	Median	3199300000	1786300000	1413000000	196130000	104100000	92032000	528380000	307220000	221170000	1094700000	650320000	444380000	1380100000	724670000	655380000	8123	1033	7684	50437;50438;50439;50440;50441;50442;50443;50444;50445;50446;50447;50448;50449;50450;50451;50452;50453;50454	68158;68159;68160;68161;68162;68163;68164;68165;68166;68167;68168;68169;68170;68171;68172;68173;68174;68175;68176	68162			19	
DLEEFFSTVGK	1	Unmodified	1270.6081	0.60813326	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	2	2	4	94.461	94.063	2	5.9902E-07	83825	160511_QHF_FH_JSI9i_1	120.68	101.41			1.6122	1.3694	136.26	11	10	Median	1.6122	1.3694	139.27	3	3	Median	0.66481	0.76588	228.36	2	2	Median	0.76928	0.75642	204.9	2	2	Median	1.0896	1.2247	129.33	4	3	Median	1175600000	615220000	560370000	236020000	103230000	132790000	268300000	167480000	100820000	327700000	159630000	168080000	343560000	184880000	158680000	8124	2538	7685	50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465	68177;68178;68179;68180;68181;68182;68183;68184;68185;68186;68187;68188;68189;68190;68191;68192;68193;68194;68195;68196	68194			20	
DLEEILYTLGLHLSR	0	Unmodified	1770.9516	0.95159983	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	99.096	89.726	3	2.44E-33	49281	160513_QHF_FH_JSI12Kac_6	216.39	178.84			0.88452	0.839	116.08	5	5	Median	0.65927	0.56272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6224	1.5351	85.435	2	2	Median	0.7937	0.84113	197.56	2	2	Median	826090000	375340000	450750000	147640000	88355000	59288000	0	0	0	386500000	115860000	270640000	291950000	171130000	120820000	8125	3438	7686	50466;50467;50468;50469;50470;50471;50472	68197;68198;68199;68200;68201;68202;68203	68201			7	
DLEEVKQK	2	Acetyl (K)	1029.5342	0.53424004	58	CON__P15497			yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					1	2					1	1	1	40.368	31.515	2	0.0008279	14434	160513_QHF_FH_JSI10Kac_2	93.374	20.114		+	4.6144	5.0593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6144	5.0593	NaN	1	1	Median	9459200	2995100	6464100	0	0	0	2214100	2214100	0	2259100	0	2259100	4986000	781020	4204900	8126	58	7687	50473;50474;50475	68204;68205;68206	68205	39		3	
DLEEWNQR	0	Unmodified	1088.4887	0.48868683	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.145	37.725	2	8.689E-07	33880	160511_QHF_FH_JSI10i_1	155.51	146.56			1.2349	1.5441	28.843	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4763	1.7158	NaN	1	1	Median	1.033	0.99602	NaN	1	1	Median	1.5105	1.5441	NaN	1	1	Median	482540000	208350000	274200000	0	0	0	197560000	84256000	113300000	215070000	93123000	121940000	69918000	30968000	38950000	8127	931	7688	50476;50477;50478;50479	68207;68208;68209;68210	68209			4	
DLEGENIEIVFAKPPDQK	2	Unmodified	2041.0368	0.036786022	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	80.288	79.808	2;3	8.126E-32	72329	160511_QHF_FH_JSI10i_1	154.65	132.12			0.96284	1.0157	12.797	5	1	Median	0.96284	0.79622	NaN	1	0	Median	0.93047	1.0844	NaN	1	0	Median	1.1089	1.0814	NaN	1	0	Median	0.96161	0.981	4.9195	2	1	Median	563320000	270830000	292490000	53587000	28312000	25276000	210750000	103030000	107730000	126480000	57957000	68519000	172500000	81537000	90967000	8128	423	7689	50480;50481;50482;50483;50484;50485;50486;50487	68211;68212;68213;68214;68215;68216;68217;68218;68219;68220;68221;68222;68223;68224;68225;68226	68224			16	
DLEGIGK	1	Unmodified	730.38612	0.38611924	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				1	2	3	4	26.362	23.483	2	0.0071002	20836	160511_QHF_FH_JSI10i_1	89.903	89.903			10.933	12.486	260.48	10	10	Median	45.434	37.225	NaN	1	1	Median	1.2487	1.4685	317.28	2	2	Median	8.2235	8.1559	289.55	3	3	Median	12.462	13.484	299.61	4	4	Median	12789000000	4167100000	8621800000	1456000000	61518000	1394500000	1083700000	821530000	262170000	3283900000	1189100000	2094800000	6965300000	2095000000	4870300000	8129	2199	7690	50488;50489;50490;50491;50492;50493;50494;50495;50496;50497	68227;68228;68229;68230;68231;68232;68233;68234;68235;68236;68237	68233			11	
DLEGIPGNVR	0	Unmodified	1068.5564	0.55637247	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.424	48.009	2	0.011693	43450	160511_QHF_FH_JSI11i_1	46.129	26.342			1.797	1.7506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.797	1.7506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34573000	14543000	20030000	0	0	0	0	0	0	34573000	14543000	20030000	0	0	0	8130	3355	7691	50498	68238	68238			1	
DLEGLSQR	0	Unmodified	916.46141	0.46140945	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	6.25	6					1	3			1	4	2	3	33.378	29.274	2	0.00091706	26471	160511_QHF_FH_JSI12i_1	117.4	48.977			0.28412	0.32419	128.95	10	10	Median	2.4804	2.0173	NaN	1	1	Median	0.27498	0.32419	171.15	4	4	Median	0.1682	0.1651	55.605	2	2	Median	0.522	0.56792	88.402	3	3	Median	1861200000	1149600000	711640000	291420000	126290000	165130000	518030000	331180000	186840000	254270000	195760000	58506000	797480000	496320000	301160000	8131	1436	7692	50499;50500;50501;50502;50503;50504;50505;50506;50507;50508	68239;68240;68241;68242;68243;68244;68245;68246;68247;68248	68240			10	
DLEGLSQRHEEK	1	Unmodified	1439.7005	0.70047052	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		3	2	18.985	18.845	2;3	0.00011789	15592	160511_QHF_FH_JSI12i_3	89.43	75.421			1.0115	0.89436	129.82	5	4	Median	1.0115	0.89436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.564	1.4519	167.52	2	2	Median	0.83405	0.84832	189.99	2	2	Median	602770000	254540000	348230000	30813000	10561000	20252000	0	0	0	386450000	150840000	235610000	185510000	93142000	92366000	8132	1436	7693	50509;50510;50511;50512;50513;50514	68249;68250;68251;68252;68253;68254;68255;68256	68256			8	
DLEGLSQRHEEKVAAYDK	2	Acetyl (K)	2129.0389	0.038911287	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		56.123	46.395	3	0.0010323	25079	160513_QHF_FH_JSI11Kac_6	89.982	66.502			0.33944	0.32006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33944	0.32006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10061000	9213800	847700	0	0	0	0	0	0	10061000	9213800	847700	0	0	0	8133	1436	7694	50515	68257	68257	1399		1	
DLEGSDIDTR	0	Unmodified	1119.5044	0.50439647	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	3	2	29.067	26.643	2	1.8571E-09	23797	160511_QHF_FH_JSI10i_1	132.01	97.758			0.94294	0.93182	82.785	9	7	Median	1.5725	1.2818	124.31	2	2	Median	0.69001	0.81269	70.33	2	1	Median	0.94294	0.93182	90.922	3	2	Median	1.1297	1.1728	118.66	2	2	Median	3157300000	1221700000	1935500000	766680000	245100000	521580000	559360000	270060000	289300000	852560000	258700000	593870000	978670000	447860000	530810000	8134	1844	7695	50516;50517;50518;50519;50520;50521;50522;50523;50524	68258;68259;68260;68261;68262;68263;68264;68265;68266;68267	68263			9	
DLEGTYLCR	0	Unmodified	1125.5125	0.51245874	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		45.884	45.473	2	0.0037355	41064	160511_QHF_FH_JSI11i_1	69.598	63.939			0.63471	0.74888	58.217	3	3	Median	NaN	NaN	NaN	0	0	Median	0.63471	0.74888	NaN	1	1	Median	0.89133	0.83695	81.829	2	2	Median	NaN	NaN	NaN	0	0	Median	62991000	36427000	26564000	0	0	0	15212000	11067000	4144500	47779000	25359000	22420000	0	0	0	8135	834	7696	50525;50526;50527	68268;68269;68270	68269			3	
DLEHLMLLIGELYK	1	Unmodified	1685.9062	0.90622954	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	99.853	91.222	2;3	4.3865E-33	52021	160513_QHF_FH_JSI11Kac_6	206.58	153.79			0.72994	0.61346	48.901	5	2	Median	0.72994	0.61346	NaN	1	0	Median	1.0459	1.2509	NaN	1	0	Median	0.88268	0.85166	56.36	2	1	Median	0.41354	0.43191	NaN	1	1	Median	537620000	290940000	246680000	128850000	80666000	48183000	155270000	89722000	65543000	218880000	93798000	125080000	34626000	26754000	7872500	8136	3862	7697	50528;50529;50530;50531;50532	68271;68272;68273;68274;68275;68276	68272			6	
DLEHLMLLIGELYKK	2	Unmodified	1814.0012	0.001192559	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				97.653	88.548	3	1.6829E-06	50742	160513_QHF_FH_JSI9Kac_6	106.96	79.932			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8137	3862	7698	50533	68277	68277			1	
DLEIDELQK	1	Unmodified	1101.5554	0.55536941	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	56.999	56.244	2	0.00042813	50919	160511_QHF_FH_JSI11i_1	90.657	56.86			0.57567	0.60059	65.861	5	5	Median	1.0084	0.85103	92.289	2	2	Median	0.23711	0.26945	NaN	1	1	Median	0.63865	0.60225	NaN	1	1	Median	0.57567	0.60059	NaN	1	1	Median	159340000	95825000	63518000	65553000	31159000	34394000	34751000	28555000	6195900	23574000	12254000	11320000	35465000	23857000	11608000	8138	416	7699	50534;50535;50536;50537;50538	68278;68279;68280;68281;68282	68278			5	
DLEIQMK	1	Unmodified	875.44225	0.44225391	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.669	44.861	2	0.0071384	40488	160511_QHF_FH_JSI10i_1	76.847	28.673			3.4992	3.1274	13.185	2	2	Median	3.4825	2.849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.516	3.433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69471000	24933000	44538000	15478000	3802200	11676000	0	0	0	53993000	21131000	32862000	0	0	0	8139	4881	7700	50539;50540;50541	68283;68284;68285	68284			3	
DLELAVPGTYDPNQPIIR	0	Unmodified	2010.0422	0.042205751	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	92.398	91.971	2	0.00037268	83681	160511_QHF_FH_JSI12i_1	67.456	41.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8140	1535	7701	50542	68286	68286			1	
DLELLIQTATR	0	Unmodified	1271.7085	0.70851601	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			95.765	95.78	2	0.00019404	86472	160511_QHF_FH_JSI10i_1	91.855	62.693			0.53621	0.59119	211.86	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53621	0.59119	211.86	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25934000	18577000	7357500	0	0	0	25934000	18577000	7357500	0	0	0	0	0	0	8141	2195	7702	50543;50544	68287;68288	68287			2	
DLELPDMHMR	0	Unmodified	1255.5689	0.56892776	3443	Q8IXK0	PHC2	Polyhomeotic-like protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.569	64.022	3	0.01004	55723	160511_QHF_FH_JSI11i_2	37.18	27.128			1.1237	1.0572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1237	1.0572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16503000	6653500	9850000	0	0	0	0	0	0	16503000	6653500	9850000	0	0	0	8142	3443	7703	50545	68289;68290	68289			2	
DLENGSHIR	0	Unmodified	1039.5047	0.50467125	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		12.89	12.488	2;3	4.6266E-05	9841	160511_QHF_FH_JSI11i_2	98.458	44.253			0.847	0.95624	9.2146	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71626	0.89592	NaN	1	0	Median	1.0016	1.0206	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	223930000	120280000	103650000	0	0	0	97780000	62449000	35331000	126150000	57827000	68322000	0	0	0	8143	1254	7704	50546;50547;50548	68291;68292;68293	68292			3	
DLEPESDR	0	Unmodified	959.4196	0.41960421	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		14.598	14.414	2	0.0042909	12015	160511_QHF_FH_JSI10i_1	68.383	52.943			0.94655	1.0172	11.158	2	2	Median	NaN	NaN	NaN	0	0	Median	0.80654	0.94001	NaN	1	1	Median	1.1109	1.1007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	240730000	91800000	148930000	0	0	0	105740000	44240000	61503000	134980000	47560000	87424000	0	0	0	8144	5380	7705	50549;50550;50551;50552	68294;68295;68296;68297	68297			4	
DLEPGPSGTSK	1	Unmodified	1086.5193	0.51931826	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	18.066	17.54	2	0.00081282	14585	160511_QHF_FH_JSI9i_1	79.974	49.72			0.86679	0.77986	68.085	6	6	Median	1.6847	1.3885	85.117	2	2	Median	0.3781	0.44955	NaN	1	1	Median	1.217	1.1869	55.857	2	2	Median	0.51981	0.53169	NaN	1	1	Median	444750000	217140000	227610000	129850000	48159000	81688000	74846000	55250000	19596000	171540000	78692000	92847000	68519000	35038000	33481000	8145	3888	7706	50553;50554;50555;50556;50557;50558;50559	68298;68299;68300;68301;68302;68303;68304	68304			7	
DLEQGDVSETIR	0	Unmodified	1360.647	0.64703797	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.55	41.177	2	1.4213E-05	37170	160511_QHF_FH_JSI11i_1	117.52	91.006			2.4987	2.6194	123.66	2	2	Median	NaN	NaN	NaN	0	0	Median	5.3601	6.28	NaN	1	1	Median	1.1648	1.0925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	426910000	60724000	366190000	0	0	0	359880000	26716000	333160000	67031000	34009000	33023000	0	0	0	8146	1694	7707	50560;50561	68305;68306	68305			2	
DLEQLAK	1	Unmodified	815.43888	0.43888309	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				41.633	40.421	2	0.01409	31419	160511_QHF_FH_JSI9i_1	58.167	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20245000	0	20245000	20245000	0	20245000	0	0	0	0	0	0	0	0	0	8147	3009	7708	50562;50563	68307;68308	68308			2	
DLEQPSQAAGINLEIIR	0	Unmodified	1865.9847	0.98469087	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	86.226	85.733	2	5.9518E-05	78249	160511_QHF_FH_JSI12i_1	107.17	87.709			1.4409	1.4242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4409	1.4242	NaN	1	1	Median	12475000	4745100	7729700	0	0	0	0	0	0	0	0	0	12475000	4745100	7729700	8148	2787	7709	50564;50565	68309;68310	68310			2	
DLESAEER	0	Unmodified	947.4196	0.41960421	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.001	13.164	2	0.016878	10983	160511_QHF_FH_JSI9i_1	58.981	33.244			4.4406	3.6281	89.689	5	3	Median	4.4406	3.6281	NaN	1	1	Median	7.3652	8.6182	NaN	1	1	Median	3.2554	3.1882	127.91	2	1	Median	1.4299	1.4691	NaN	1	0	Median	521720000	146350000	375380000	129920000	27028000	102890000	160660000	29748000	130920000	58331000	8308600	50023000	172810000	81260000	91550000	8149	313	7710	50566;50567;50568;50569;50570	68311;68312;68313;68314;68315;68316	68316			6	
DLESFNEDFLK	1	Unmodified	1355.6245	0.62451161	3068	Q6N069	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			83.703	83.556	2	0.0019759	75922	160511_QHF_FH_JSI10i_1	74.162	45.435			0.60336	0.68763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60336	0.68763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21420000	13311000	8108600	0	0	0	21420000	13311000	8108600	0	0	0	0	0	0	8150	3068	7711	50571	68317	68317			1	
DLESLFHR	0	Unmodified	1015.5087	0.50869399	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.496		9	7							2	2	5	7	62.189	61.563	2;3	0.00031696	54566	160511_QHF_FH_JSI10i_2	93.162	53.161			1.6968	1.9267	82.62	15	15	Median	1.1672	1.0106	132.49	2	2	Median	0.32954	0.40602	17.897	2	2	Median	2.1151	2.0732	84.21	5	5	Median	1.868	2.0187	71.708	6	6	Median	717520000	328840000	388680000	39102000	18666000	20437000	98946000	69590000	29355000	275270000	116470000	158800000	304210000	124110000	180100000	8151	2207	7712	50572;50573;50574;50575;50576;50577;50578;50579;50580;50581;50582;50583;50584;50585;50586;50587	68318;68319;68320;68321;68322;68323;68324;68325;68326;68327;68328;68329;68330;68331;68332;68333	68329			16	
DLESLREYVESQLQR	0	Unmodified	1863.9327	0.9326553	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		100.9	100.76	2;3	2.5248E-22	83394	160511_QHF_FH_JSI10i_3	181.26	122.77			0.58858	0.59105	54.68	3	0	Plateau	0.94805	0.75682	NaN	1	0	Median	0.51226	0.59105	NaN	1	0	Median	1.7608	1.6826	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	190420000	132340000	58085000	48901000	24393000	24508000	123160000	101870000	21299000	18358000	6079900	12278000	0	0	0	8152	3603	7713	50588;50589;50590;50591	68334;68335;68336;68337;68338	68335			5	
DLETQPHMQEFR	0	Unmodified	1529.6933	0.69327665	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	42.376	41.33	2	3.8674E-12	35439	160511_QHF_FH_JSI11i_2	155	147.08			0.85381	0.896	33.091	4	3	Median	NaN	NaN	NaN	0	0	Median	0.59344	0.71117	NaN	1	1	Median	0.95844	0.95294	NaN	1	0	Median	1.033	1.138	42.526	2	2	Median	90423000	51534000	38889000	0	0	0	18237000	15230000	3006200	32101000	16960000	15141000	40086000	19344000	20742000	8153	2806	7714	50592;50593;50594;50595;50596	68339;68340;68341;68342;68343;68344	68342			6	
DLEVALTHK	1	Unmodified	1024.5553	0.55530983	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.875	40.499	2	0.0018413	34689	160511_QHF_FH_JSI12i_2	76.221	51.299			2.9197	3.1885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9197	3.1885	NaN	1	1	Median	18120000	6112300	12007000	0	0	0	0	0	0	0	0	0	18120000	6112300	12007000	8154	2899	7715	50597	68345;68346	68346			2	
DLEWVER	0	Unmodified	945.4556	0.45559579	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								2	2	3	2	54.462	53.833	2	0.0073727	48958	160511_QHF_FH_JSI12i_1	89.142	17.122			0.96187	0.85971	187.75	8	8	Median	2.1109	1.8076	266.42	2	2	Median	0.61423	0.72192	225.99	2	2	Median	0.57098	0.54004	227.08	2	2	Median	0.65337	0.66828	236.64	2	2	Median	276680000	140570000	136120000	40368000	21910000	18458000	72698000	38506000	34193000	111060000	52970000	58088000	52558000	27182000	25376000	8155	4322	7716	50598;50599;50600;50601;50602;50603;50604;50605;50606	68347;68348;68349;68350;68351;68352;68353;68354;68355	68350			9	
DLFALAR	0	Unmodified	804.44939	0.4493882	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	69.279	68.381	2	0.0052426	59771	160511_QHF_FH_JSI11i_2	110.23	51.571			0.52642	0.52576	112.74	7	7	Median	0.3316	0.28396	NaN	1	1	Median	0.78814	0.9636	153.96	2	2	Median	1.0235	1.0149	93.005	2	2	Median	0.88566	0.94474	175.59	2	2	Median	221780000	107870000	113900000	20644000	14567000	6076900	47497000	23059000	24438000	101130000	43493000	57637000	52506000	26753000	25753000	8156	5640	7717	50607;50608;50609;50610;50611;50612;50613	68356;68357;68358;68359;68360;68361;68362	68360			7	
DLFDFSTR	0	Unmodified	999.46616	0.46616048	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	71.437	70.808	2	0.015282	60923	160511_QHF_FH_JSI12i_2	50.607	40.193			1.08	1.1973	37.895	3	1	Median	NaN	NaN	NaN	0	0	Median	1.08	1.1973	NaN	1	0	Median	1.8359	1.7781	NaN	1	1	Median	0.78902	0.83349	NaN	1	0	Median	51160000	24818000	26342000	0	0	0	19242000	9159400	10082000	18683000	7200800	11482000	13235000	8457800	4777300	8157	4458	7718	50614;50615;50616	68363;68364;68365	68364			3	
DLFDMKPFEDALR	1	Unmodified	1595.7654	0.76537896	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	100.25	100.05	3	0.0071777	85961	160511_QHF_FH_JSI12i_2	49.448	21.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2527700	0	2527700	0	0	0	0	0	0	0	0	0	2527700	0	2527700	8158	1319	7719	50617	68366	68366			1	
DLFDPIIEDR	0	Unmodified	1231.6085	0.60846762	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			2	5	2	1	82.483	80.822	2	2.9818E-14	74382	160511_QHF_FH_JSI10i_1	163.32	121.34			0.97258	0.99342	32.625	9	3	Median	1.5555	1.3026	38.324	2	1	Median	0.96316	1.1435	43.021	4	2	Median	0.94761	0.94186	0.42149	2	0	Median	0.97258	1.0107	NaN	1	0	Median	2368100000	1133300000	1234800000	540570000	223170000	317390000	700270000	371030000	329240000	575530000	272080000	303450000	551720000	267010000	284710000	8159	1017	7720	50618;50619;50620;50621;50622;50623;50624;50625;50626;50627	68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386	68377			19	
DLFDSMDK	1	Unmodified	969.41135	0.41134771	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	53.742	53.078	2	0.00010278	47298	160511_QHF_FH_JSI9i_1	129.47	26.747			0.88928	0.88297	8.0956	4	0	Linear	1.2707	1.059	NaN	1	0	Median	0.84087	1.0025	NaN	1	0	Median	0.909	0.89174	NaN	1	0	Median	0.86998	0.91079	NaN	1	0	Median	925330000	464070000	461260000	212470000	92721000	119750000	220930000	122090000	98840000	250700000	138880000	111820000	241230000	110370000	130860000	8160	1824	7721	50628;50629;50630;50631;50632	68387;68388;68389;68390;68391;68392;68393;68394;68395;68396	68395			10	
DLFDYSPPLHK	1	Unmodified	1330.6558	0.65575216	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.62	66.723	2;3	0.00016156	58318	160511_QHF_FH_JSI11i_2	93.111	65.368			1.0149	1.593	36.462	4	2	Linear	1.2969	1.1372	NaN	1	0	Median	0.97455	1.1927	NaN	1	0	Median	0.56246	0.56042	NaN	1	1	Median	1.0568	1.1531	NaN	1	1	Median	122920000	70036000	52882000	17389000	9152400	8236900	32900000	17333000	15567000	33587000	22251000	11336000	39042000	21300000	17742000	8161	5124	7722	50633;50634;50635;50636	68397;68398;68399;68400	68399			4	
DLFEDELVPLFEK	1	Unmodified	1592.7974	0.7973906	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	102.3	102.2	2	6.949E-41	92942	160511_QHF_FH_JSI11i_1	229.72	212.7			0.80468	0.73029	32.925	5	0	Median	0.86381	0.69907	NaN	1	0	Median	0.80468	0.97161	NaN	1	0	Median	0.68321	0.67152	58.07	2	0	Median	0.70247	0.73029	NaN	1	0	Median	1787900000	1004800000	783150000	175130000	81015000	94116000	620440000	355060000	265380000	437510000	243410000	194100000	554830000	325280000	229550000	8162	423	7723	50637;50638;50639;50640;50641	68401;68402;68403;68404;68405	68401			5	
DLFEEKIK	2	Acetyl (K)	1062.5597	0.55972651	915;2049	P08754;P19087;P63096	GNAI3;GNAT2;GNAI1	Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						2	2				2	1	1	72.821	63.189	2	0.00096935	33173	160513_QHF_FH_JSI10Kac_4	106.04	68.483			5.669	6.656	78.788	2	2	Median	NaN	NaN	NaN	0	0	Median	5.669	6.656	78.788	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11137000	5832400	5304700	0	0	0	6461900	1157200	5304700	2486000	2486000	0	2189200	2189200	0	8163	915;2049	7724	50642;50643;50644;50645	68406;68407;68408;68409	68406	668		4	
DLFFALWIPDLFMK	1	Unmodified	1754.9106	0.91058664	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.4	1.65				1					7	2	3	3		104.62	96.844	2;3	3.0978E-33	55100	160513_QHF_FH_JSI9Kac_6	210.38	173.53			0.85645	0.74195	198.79	5	5	Median	0.58956	0.50694	53.866	2	2	Median	2.6594	3.1577	348.78	2	2	Median	1.2017	1.1609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	686650000	214070000	472580000	170660000	132340000	38319000	504030000	74056000	429970000	11963000	7679100	4284300	0	0	0	8164	1242	7725	50646;50647;50648;50649;50650;50651;50652;50653	68410;68411;68412;68413;68414;68415;68416;68417	68413			8	
DLFFALWIPDLFMK	1	Oxidation (M)	1770.9055	0.90550126	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	103.23	95.771	2	5.8951E-07	57668	160513_QHF_FH_JSI10Kac_6	156.01	131.67			0.96578	0.90569	79.144	4	4	Median	1.0684	0.90569	90.827	2	2	Median	0.81414	0.9717	102.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	446430000	245840000	200600000	129690000	65110000	64585000	316740000	180730000	136010000	0	0	0	0	0	0	8165	1242	7725	50654;50655;50656;50657;50658	68418;68419;68420;68421;68422	68421		874	5	
DLFGKFGPALSVK	2	Acetyl (K)	1419.7762	0.77620165	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	1	0	0	1			By MS/MS		15	0								1				1		92.326	81.92	2	0.0088962	42167	160513_QHF_FH_JSI11Kac_5	64.439	44.652			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2275200	2275200	0	0	0	0	0	0	0	2275200	2275200	0	0	0	0	8166	1009;4688	7726	50659	68423	68423	806		1	
DLFHGATFVPR	0	Unmodified	1258.6459	0.64585618	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	66.213	65.353	3	1.3164E-13	56457	160511_QHF_FH_JSI12i_3	145.91	133.7			1.1267	0.96645	15.664	8	0	Median	1.1384	0.96645	2.2241	2	0	Median	0.93006	1.0899	20.454	2	0	Median	1.0267	0.98047	19.282	2	0	Median	1.0225	1.064	26.657	2	0	Median	517420000	251360000	266060000	53292000	23137000	30155000	97094000	55473000	41621000	161550000	77112000	84441000	205480000	95635000	109850000	8167	4033	7727	50660;50661;50662;50663;50664;50665;50666;50667	68424;68425;68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436;68437;68438;68439;68440;68441	68440			18	
DLFHIPPSYK	1	Unmodified	1215.6288	0.62880913	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		26								2	7	6	11	67.368	66.396	3	0.0023535	58186	160511_QHF_FH_JSI11i_2	40.715	32.79			0.9482	1.0199	30.762	17	12	Median	NaN	NaN	NaN	0	0	Median	0.74139	0.93427	25.463	4	3	Median	1.0401	1.034	29.785	5	4	Median	0.90733	0.97215	34.926	8	5	Median	293520000	149870000	143650000	0	0	0	62235000	34107000	28129000	115170000	57616000	57551000	116110000	58149000	57965000	8168	4575	7728	50668;50669;50670;50671;50672;50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693	68442;68443;68444;68445;68446;68447;68448;68449;68450;68451;68452;68453;68454;68455;68456;68457;68458;68459;68460;68461;68462;68463;68464;68465;68466;68467;68468;68469	68456			27	
DLFNAIATGK	1	Unmodified	1048.5553	0.55530983	800	P04040	CAT	Catalase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.8	6.37	2						3				2	2	1	73.426	65.327	2	2.7178E-05	60736	160511_QHF_FH_JSI11i_1	106.2	46.994			1.5035	1.6678	79.482	4	3	Median	NaN	NaN	NaN	0	0	Median	1.374	1.6176	NaN	1	1	Median	1.6005	1.5685	137.46	2	1	Median	1.6452	1.7196	NaN	1	1	Median	96515000	47652000	48863000	0	0	0	2259400	730450	1528900	92640000	46148000	46492000	1615400	773190	842230	8169	800	7729	50694;50695;50696;50697;50698	68470;68471;68472;68473;68474	68470			5	
DLFNVDAFK	1	Unmodified	1067.5288	0.52876073	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	82.877	82.442	2	0.001145	75032	160511_QHF_FH_JSI11i_1	79.906	46.11			0.7848	0.76583	15.522	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70938	0.68623	NaN	1	1	Median	0.86823	0.85467	NaN	1	1	Median	24358000	12855000	11504000	0	0	0	0	0	0	12750000	6497900	6251700	11609000	6356700	5252000	8170	204	7730	50699;50700	68475;68476	68475			2	
DLFPVGR	0	Unmodified	802.43374	0.43373813	735	O95825	CRYZL1	Quinone oxidoreductase-like protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	53.953	52.99	2	0.030052	45924	160511_QHF_FH_JSI11i_2	52.299	45.277			1.0672	1.1338	13.702	4	0	Median	1.2287	1.0821	NaN	1	0	Median	1.0075	1.1881	NaN	1	0	Median	0.88256	0.89584	NaN	1	0	Median	1.1305	1.2071	NaN	1	0	Median	71370000	34341000	37028000	15460000	8686000	6773700	16132000	7985000	8147000	23515000	11019000	12495000	16263000	6650600	9612700	8171	735	7731	50701;50702;50703;50704	68477	68477			1	
DLFPYDK	1	Unmodified	896.42798	0.42798405	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	54.271	53.609	2	0.010539	48244	160511_QHF_FH_JSI10i_1	65.038	36.526			1.1172	1.0477	39.49	4	2	Median	1.1398	0.9417	NaN	1	0	Median	0.6398	0.75169	NaN	1	1	Median	1.9288	1.8961	NaN	1	1	Median	1.095	1.1657	NaN	1	0	Median	453610000	215590000	238020000	113130000	42787000	70339000	114030000	63752000	50273000	118260000	50748000	67517000	108190000	58303000	49890000	8172	3277	7732	50705;50706;50707;50708;50709	68478;68479;68480;68481;68482;68483;68484;68485	68482			8	
DLFPYEESK	1	Unmodified	1126.5183	0.51825563	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.96	7	1				1	1			3	3	2	2	53.157	49.753	1;2	2.4592E-06	49867	160511_QHF_FH_JSI11i_1	126.41	101.49			0.89734	0.93584	18.076	10	1	Median	1.1104	0.93155	12.803	3	0	Median	0.82085	0.97357	21.217	3	1	Median	0.75884	0.72889	27.877	2	0	Median	0.88579	0.95996	2.3495	2	0	Median	7761900000	3871900000	3890000000	2040700000	1041000000	999740000	1804400000	968090000	836340000	1979700000	966860000	1012900000	1937000000	895990000	1041000000	8173	1758	7733	50710;50711;50712;50713;50714;50715;50716;50717;50718;50719	68486;68487;68488;68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499;68500;68501;68502;68503;68504;68505	68487			20	
DLFQVAFNR	0	Unmodified	1108.5665	0.56654322	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.09	3	6	2					5		3	3	6	4	80.408	76.773	2	2.1585E-11	68127	160511_QHF_FH_JSI12i_2	161.6	151.69			0.88702	0.94153	49.835	16	13	Median	1.2876	1.0269	54.903	3	2	Median	0.97724	1.1757	25.698	3	2	Plateau	1.1392	1.104	66.616	6	6	Median	0.74562	0.7943	41.226	4	3	Median	783650000	375210000	408450000	137950000	64364000	73584000	127050000	67589000	59458000	356180000	150450000	205730000	162480000	92807000	69673000	8174	2517	7734	50720;50721;50722;50723;50724;50725;50726;50727;50728;50729;50730;50731;50732;50733;50734;50735	68506;68507;68508;68509;68510;68511;68512;68513;68514;68515;68516;68517;68518;68519;68520;68521;68522;68523;68524	68509			19	
DLFQVIYNVK	1	Unmodified	1237.6707	0.67067394	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.89	5	4						3		2	3	4	3	95.755	92.511	2	3.2765E-07	41727	160513_QHF_FH_JSI11Kac_5	111.04	91.251			0.48223	0.44095	80.427	10	10	Median	1.2158	1.037	126.54	2	2	Median	0.25401	0.30188	54.717	3	3	Plateau	0.89994	0.84665	86.004	4	4	Median	0.29682	0.3392	NaN	1	1	Median	140350000	87126000	53228000	49226000	23117000	26109000	34445000	26779000	7665700	21359000	12439000	8920100	35324000	24791000	10533000	8175	2137	7735	50736;50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747	68525;68526;68527;68528;68529;68530;68531;68532;68533;68534;68535;68536;68537	68535			13	
DLFSTFTITR	0	Unmodified	1199.6186	0.61863837	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	88.79	88.187	2	0.0021417	77580	160511_QHF_FH_JSI11i_2	61.65	41.321			1.0628	1.0301	29.38	5	3	Median	1.3268	1.1237	NaN	1	1	Median	0.78019	0.98143	53.391	2	2	Median	1.0628	1.0301	NaN	1	0	Median	0.72015	0.80433	NaN	1	0	Median	65520000	33743000	31777000	9665400	4616100	5049300	22810000	12894000	9915600	17527000	8987500	8539700	15517000	7245400	8272100	8176	163	7736	50748;50749;50750;50751;50752	68538;68539;68540;68541;68542	68540			5	
DLFTASNDPLLWR	0	Unmodified	1546.778	0.77799256	5597	Q9Y3I1	FBXO7	F-box only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			100.15	100.07	2	3.3561E-05	87866	160511_QHF_FH_JSI9i_2	117.67	99.361			1.281	1.3423	59.911	2	1	Median	2.3801	2.0503	NaN	1	1	Median	0.68944	0.87874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25050000	9263300	15787000	11421000	3331500	8089000	13630000	5931800	7698100	0	0	0	0	0	0	8177	5597	7737	50753;50754	68543;68544	68543			2	
DLFTCTIK	1	Unmodified	996.49502	0.49501776	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	2	1	59.915	56.787	2	0.0018455	51642	160511_QHF_FH_JSI11i_1	96.492	73.472			0.73469	0.79422	64.08	4	2	Median	NaN	NaN	NaN	0	0	Median	0.79719	0.93016	NaN	1	0	Median	0.6469	0.63296	9.751	2	1	Median	2.2852	2.4472	NaN	1	1	Median	371550000	193990000	177560000	0	0	0	106330000	61757000	44568000	157650000	81206000	76444000	107580000	51026000	56553000	8178	3343	7738	50755;50756;50757;50758	68545;68546;68547;68548	68545			4	
DLFVDLVEK	1	Unmodified	1076.5754	0.57537657	333	O43427	FIBP	Acidic fibroblast growth factor intracellular-binding protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.404	89.533	2	0.0038164	77314	160511_QHF_FH_JSI12i_2	59.245	36.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8179	333	7739	50759	68549	68549			1	
DLGAYLR	0	Unmodified	806.42865	0.42865276	4383	Q9BRT2	UQCC2	Ubiquinol-cytochrome-c reductase complex assembly factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	3	2	3	55.842	55.061	2	0.010539	47699	160511_QHF_FH_JSI11i_2	74.396	32.894			2.4064	2.3422	86.591	8	7	Median	3.6445	3.1622	NaN	1	1	Median	1.7885	2.0647	166.52	2	2	Median	2.2672	2.2272	84.127	2	1	Median	0.92408	0.99352	88.597	3	3	Plateau	159120000	72146000	86970000	14733000	2939100	11794000	34946000	22489000	12456000	59488000	24273000	35215000	49949000	22444000	27505000	8180	4383	7740	50760;50761;50762;50763;50764;50765;50766;50767;50768	68550;68551;68552;68553;68554;68555;68556;68557;68558	68557			9	
DLGEEHFK	1	Unmodified	973.45051	0.45051041	50	CON__P02769			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6									3	5	3	24.032	23.506	2;3	0.0012793	19550	160511_QHF_FH_JSI11i_2	107.9	83.264		+	0.54487	0.64263	103.9	11	9	Median	NaN	NaN	NaN	0	0	Median	0.53443	0.64263	86.499	3	3	Plateau	0.45383	0.43249	121.69	5	4	Median	0.68351	0.70881	118.23	3	2	Median	755700000	456170000	299530000	0	0	0	108640000	52486000	56157000	405460000	255290000	150170000	241600000	148390000	93207000	8181	50	7741	50769;50770;50771;50772;50773;50774;50775;50776;50777;50778;50779	68559;68560;68561;68562;68563;68564;68565;68566;68567;68568	68566			10	
DLGEELEALK	1	Unmodified	1115.571	0.57101948	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	76.728	74.237	2	2.9322E-19	67062	160511_QHF_FH_JSI9i_1	179.37	141.81			0.83103	0.85685	19.2	5	1	Median	1.0547	0.85685	NaN	1	0	Median	0.64331	0.77482	36.312	2	1	Median	0.92597	0.89192	NaN	1	0	Median	0.79018	0.83724	NaN	1	0	Median	2999500000	1537200000	1462300000	632260000	293220000	339040000	682560000	420630000	261930000	933050000	416410000	516640000	751620000	406930000	344690000	8182	1436;1445	7742	50780;50781;50782;50783;50784	68569;68570;68571;68572;68573;68574;68575;68576;68577;68578;68579;68580;68581;68582;68583;68584;68585	68584			17	
DLGEGHFGK	1	Unmodified	958.45084	0.45084476	1230;1326	P29597;P23458	TYK2;JAK1	Non-receptor tyrosine-protein kinase TYK2;Tyrosine-protein kinase JAK1	no	no	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	24.214	23.151	2	0.039444	19225	160511_QHF_FH_JSI12i_2	46.334	21.411			0.53928	0.56671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53928	0.56671	NaN	1	1	Median	24491000	20558000	3933000	0	0	0	10820000	10820000	0	0	0	0	13671000	9737900	3933000	8183	1326;1230	7743	50785;50786	68586;68587	68586			2	
DLGFFGIYK	1	Unmodified	1058.5437	0.54368251	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.43		2					1	5	1	2	3	3	1	89.554	81.686	2	0.00067508	80573	160511_QHF_FH_JSI11i_2	86.953	49.933			1.2287	1.3137	97.892	8	8	Median	0.96974	0.80715	79.667	2	2	Median	0.77311	0.90025	48.238	2	2	Median	0.49577	0.48354	144.06	3	3	Plateau	3.0257	3.42	NaN	1	1	Median	250050000	155230000	94824000	5808800	2826800	2982000	6732800	3513100	3219600	186960000	127380000	59582000	50546000	21505000	29040000	8184	5345	7744	50787;50788;50789;50790;50791;50792;50793;50794;50795	68588;68589;68590;68591;68592;68593;68594;68595;68596	68593			9	
DLGFFGIYKGAK	2	Acetyl (K)	1356.7078	0.70778773	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		90.338	79.875	2	0.0020545	41480	160513_QHF_FH_JSI11Kac_5	77.677	58.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1007300	1007300	0	0	0	0	0	0	0	1007300	1007300	0	0	0	0	8185	5345	7745	50796	68597	68597	3369		1	
DLGFNGAPYR	0	Unmodified	1108.5302	0.53015772	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	51.873	51.291	2	2.3769E-05	46671	160511_QHF_FH_JSI12i_1	107.29	67.632			0.98393	1.0255	45.341	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4089	1.342	NaN	1	1	Median	0.72746	0.75384	43.524	2	2	Median	252890000	140500000	112400000	0	0	0	0	0	0	106730000	52032000	54696000	146170000	88463000	57702000	8186	5658	7746	50797;50798;50799	68598;68599;68600	68600			3	
DLGGFDEDAEPR	0	Unmodified	1319.563	0.56297399	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.858	48.178	2	8.7585E-05	43586	160511_QHF_FH_JSI12i_1	104.79	94.564			1.4779	1.3666	24.05	4	3	Median	1.7849	1.4779	NaN	1	1	Median	0.88978	1.0521	NaN	1	0	Median	1.9455	1.855	NaN	1	1	Median	1.2237	1.2637	NaN	1	1	Median	158920000	58105000	100820000	33527000	13206000	20322000	45848000	16827000	29020000	37969000	9490600	28478000	41576000	18581000	22995000	8187	4374	7747	50800;50801;50802;50803	68601;68602;68603;68604	68602			4	
DLGGFDEDAEPRR	0	Unmodified	1475.6641	0.66408501	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	40.197	38.832	3	0.05913	33103	160511_QHF_FH_JSI12i_2	20.271	14.778			1.6	1.7518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6	1.7518	NaN	1	1	Median	19346000	7405800	11940000	0	0	0	0	0	0	0	0	0	19346000	7405800	11940000	8188	4374	7748	50804	68605	68605			1	
DLGIFWLNAAETWVDISSNTAGK	1	Unmodified	2507.2333	0.233254	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.6	6.09		2	2	2					4	2	2	5	1	103.17	98.359	3	1.3049E-48	51174	160513_QHF_FH_JSI12Kac_6	184.35	176.45			0.90498	1.0169	35.622	7	1	Median	1.1015	0.96081	38.228	2	0	Median	0.89529	1.0398	NaN	1	0	Median	1.0275	1.0169	28.775	3	1	Median	0.47614	0.51155	NaN	1	0	Median	340240000	204700000	135540000	130200000	76338000	53863000	88266000	51730000	36536000	65081000	34432000	30650000	56694000	42200000	14493000	8189	2569	7749	50805;50806;50807;50808;50809;50810;50811;50812;50813;50814	68606;68607;68608;68609;68610;68611;68612;68613;68614;68615;68616;68617;68618;68619;68620;68621	68618			16	
DLGIMKNIK	2	Acetyl (K)	1072.5951	0.59506616	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	1	2	75.873	65.26	2	0.00018243	34689	160513_QHF_FH_JSI10Kac_4	96.492	50.774			2.7709	2.7483	21.211	3	3	Median	NaN	NaN	NaN	0	0	Median	1.9834	2.2657	NaN	1	1	Median	2.7709	2.7483	NaN	1	1	Median	3.259	3.461	NaN	1	1	Median	12713000	6493000	6219800	0	0	0	4407700	2638700	1769000	3039800	776300	2263500	5265300	3078100	2187200	8190	4922	7750	50815;50816;50817;50818;50819	68622;68623;68624;68625;68626	68622	3269		5	
DLGLAFEIPPHMK	1	Unmodified	1466.7592	0.75917137	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		34								8	6	11	9	87.39	86.765	2;3	2.9405E-05	77719	160511_QHF_FH_JSI10i_2	87.001	72.314			0.94073	1.013	29.782	21	10	Median	1.2136	1.0536	6.3939	4	2	Median	0.56108	0.70609	29.623	6	2	Median	1.0874	1.0704	29.394	7	4	Median	0.93599	0.99636	25.98	4	2	Median	294260000	149410000	144840000	43529000	21225000	22304000	90640000	53208000	37432000	114130000	53004000	61127000	45954000	21973000	23981000	8191	3828	7751	50820;50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838;50839;50840;50841;50842;50843;50844;50845;50846;50847;50848;50849;50850;50851;50852;50853	68627;68628;68629;68630;68631;68632;68633;68634;68635;68636;68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647;68648;68649;68650;68651;68652;68653;68654;68655;68656;68657;68658;68659;68660;68661;68662;68663;68664;68665;68666;68667;68668;68669;68670;68671;68672;68673;68674	68672			48	
DLGLAQDSATSTK	1	Unmodified	1305.6412	0.64122431	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2					2	2	3	38.716	35.856	2	8.4557E-06	32534	160511_QHF_FH_JSI11i_1	131.12	97.69			0.2346	0.23014	148.26	7	7	Median	NaN	NaN	NaN	0	0	Median	0.71298	0.81631	237.71	2	2	Median	0.84437	0.82329	180.26	2	2	Median	0.14841	0.15588	105.46	3	3	Median	933540000	559450000	374090000	0	0	0	157930000	47868000	110060000	399570000	222140000	177430000	376040000	289440000	86596000	8192	1380	7752	50854;50855;50856;50857;50858;50859;50860	68675;68676;68677;68678;68679;68680;68681	68676			7	
DLGLDPGK	1	Unmodified	813.42323	0.42323303	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	1	2	36.925	35.097	2	0.0038596	31495	160511_QHF_FH_JSI10i_1	77.282	51.388			0.69358	0.73079	67.824	7	6	Median	1.462	1.2086	104.97	2	2	Median	0.76674	0.89538	85.883	2	2	Median	0.39173	0.38909	NaN	1	1	Median	0.79613	0.8648	23.811	2	1	Median	821430000	411720000	409720000	281910000	104030000	177880000	294600000	178840000	115760000	134080000	74149000	59930000	110840000	54696000	56142000	8193	1557	7753	50861;50862;50863;50864;50865;50866;50867	68682;68683;68684;68685;68686;68687;68688	68685			7	
DLGLPTEAYISVEEVHDDGTPTSK	1	Unmodified	2572.2181	0.21805744	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	85.634	85.301	3	7.6818E-06	77628	160511_QHF_FH_JSI12i_1	73.831	66.638			0.77829	0.91036	14.249	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75992	0.89959	NaN	1	0	Median	1.2773	1.1954	NaN	1	0	Median	0.96003	1.0196	NaN	1	0	Median	271690000	120900000	150790000	0	0	0	110960000	52745000	58213000	67236000	20569000	46666000	93494000	47589000	45906000	8194	1748	7754	50868;50869;50870	68689;68690	68689			0	
DLGLSESGEDVNAAILDESGK	1	Unmodified	2117.9964	0.99643735	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	80.583	80.108	2;3	4.0358E-70	72716	160511_QHF_FH_JSI12i_1	281.07	252.31			1.061	0.99105	18.631	9	2	Median	1.1508	0.94269	6.6746	2	0	Median	0.88194	1.0342	8.0854	2	0	Median	1.0771	1.0391	6.6906	2	0	Median	1.061	1.1142	34.591	3	2	Median	1157400000	590400000	566960000	190550000	96633000	93915000	262830000	150020000	112810000	326290000	130950000	195340000	377680000	212790000	164890000	8195	1034	7755	50871;50872;50873;50874;50875;50876;50877;50878;50879	68691;68692;68693;68694;68695;68696;68697;68698;68699;68700;68701;68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713	68698			23	
DLGLSESGEDVNAAILDESGKK	2	Unmodified	2246.0914	0.091400367	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	72.517	71.821	2;3	7.878E-56	65055	160511_QHF_FH_JSI10i_1	177.74	165.68			1.125	0.99554	26.233	4	3	Median	1.4049	1.1331	5.2671	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94387	0.9079	NaN	1	1	Median	0.62156	0.65289	NaN	1	0	Median	327090000	131590000	195500000	271020000	99919000	171100000	0	0	0	25793000	12561000	13232000	30276000	19111000	11166000	8196	1034	7756	50880;50881;50882;50883;50884	68714;68715;68716;68717;68718;68719;68720	68718			7	
DLGNLVLRPFGLSTENFQIK	1	Unmodified	2260.2216	0.2215671	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.64	101.53	3	7.2115E-43	84131	160511_QHF_FH_JSI10i_3	199.12	184.96			1.1561	0.96607	23.999	3	0	Median	1.1561	0.96607	NaN	1	0	Median	0.73269	0.85167	NaN	1	0	Median	1.4721	1.3547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	798480000	385030000	413450000	101960000	47350000	54609000	335380000	200720000	134660000	361140000	136960000	224180000	0	0	0	8197	4293	7757	50885;50886;50887	68721;68722;68723;68724	68722			4	
DLGPNSSK	1	Unmodified	816.39775	0.39774656	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.2229	8.9873	2	0.0019657	6817	160511_QHF_FH_JSI10i_1	81.296	22.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8198	871	7758	50888	68725	68725			1	
DLGQIEENDLVRK	1	Unmodified	1527.7893	0.78928553	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	55.983	54.616	3	0.016247	46796	160511_QHF_FH_JSI12i_2	36.77	18.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8199	5202	7759	50889	68726	68726			1	
DLGQSNSDLDMPFAK	1	Unmodified	1636.7403	0.74028642	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	71.97	71.27	2	0.00038871	64780	160511_QHF_FH_JSI12i_1	94.122	82.256			1.5772	1.5838	51.228	4	4	Linear	0.89013	0.74106	30.753	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95652	0.91221	NaN	1	1	Median	1.889	2.0349	NaN	1	1	Median	144330000	63213000	81115000	67574000	30441000	37133000	0	0	0	39879000	23220000	16659000	36874000	9551700	27322000	8200	3353	7760	50890;50891;50892;50893	68727;68728;68729;68730;68731	68728			5	
DLGSTEDGDGTDDFLTDKEDEK	2	Unmodified	2400.9929	0.99286811	2679	Q15527	SURF2	Surfeit locus protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	56.043	55.382	3	0.0085853	50348	160511_QHF_FH_JSI12i_1	35.538	32.324			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13755000	0	13755000	0	0	0	0	0	0	0	0	0	13755000	0	13755000	8201	2679	7761	50894	68732	68732			1	
DLGTESQIFISR	0	Unmodified	1364.6936	0.69359423	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.18	4	3				3	4	1		4	4	4	3	68.354	62.148	2	2.9789E-128	61302	160511_QHF_FH_JSI12i_1	283.58	229.42			0.92054	0.97915	44.087	15	4	Median	1.285	0.72586	79.899	4	2	Median	0.88874	1.0403	18.499	4	1	Median	1.1197	1.0855	41.56	4	1	Median	0.92054	0.97915	15.475	3	0	Median	3496400000	1648800000	1847600000	579760000	241380000	338380000	1084300000	549530000	534770000	883410000	410730000	472690000	948930000	447190000	501740000	8202	1702	7762	50895;50896;50897;50898;50899;50900;50901;50902;50903;50904;50905;50906;50907;50908;50909	68733;68734;68735;68736;68737;68738;68739;68740;68741;68742;68743;68744;68745;68746;68747;68748;68749;68750;68751;68752;68753	68736			21	
DLGVFIPAPMAQGMR	0	Unmodified	1601.8058	0.80580399	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	3	2	2	101.04	100.92	2	3.603E-11	91630	160511_QHF_FH_JSI10i_1	155.06	117.5			0.84857	0.84692	52.889	7	3	Median	1.1281	0.93815	126.5	2	2	Median	0.74251	0.89484	24.622	2	1	Median	0.87571	0.84692	NaN	1	0	Median	0.79149	0.85008	7.252	2	0	Median	604270000	336790000	267470000	111620000	69222000	42397000	205830000	99460000	106370000	105010000	53408000	51606000	181800000	114700000	67100000	8203	2084	7763	50910;50911;50912;50913;50914;50915;50916;50917;50918;50919	68754;68755;68756;68757;68758;68759;68760;68761;68762;68763;68764;68765	68759			12	
DLGVPDTK	1	Unmodified	843.4338	0.43379771	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.85	5				1	3				1	2	2	4	33.778	30.098	2	0.0076682	26935	160511_QHF_FH_JSI10i_1	58.815	39.179			0.76207	0.80231	72.087	8	7	Median	4.1901	3.5001	NaN	1	1	Median	0.69702	0.81252	36.605	2	1	Median	0.66823	0.65895	47.693	2	2	Median	0.63407	0.69722	75.894	3	3	Median	1476900000	719620000	757260000	206040000	70845000	135190000	322600000	131660000	190930000	242670000	118750000	123920000	705570000	398350000	307220000	8204	289	7764	50920;50921;50922;50923;50924;50925;50926;50927;50928	68766;68767;68768;68769;68770;68771;68772;68773;68774;68775;68776	68770			11	
DLGVPDTKAAFLLTILGFIDIFARPAAGFVAGLGK	2	Unmodified	3573.9963	0.99631218	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			105.99	100.27	4	9.8819E-26	59446	160513_QHF_FH_JSI10Kac_6	148.13	129.86			0.76321	0.90932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76321	0.90932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76810000	51288000	25522000	0	0	0	76810000	51288000	25522000	0	0	0	0	0	0	8205	289	7765	50929	68777	68777			1	
DLGYGKGYK	2	Acetyl (K)	1041.5131	0.51311067	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.452						2	5				3	1	3	44.685	35.14	2	0.0035617	20180	160513_QHF_FH_JSI12Kac_4	77.923	59.14			1.9381	2.0218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9381	2.0218	NaN	1	1	Median	6016000	4176000	1840000	0	0	0	2815400	1787600	1027800	0	0	0	3200600	2388400	812200	8206	4235	7766	50930;50931;50932;50933;50934;50935;50936	68778;68779;68780;68781;68782;68783;68784	68783	3083		7	
DLGYIYFYQR	0	Unmodified	1336.6452	0.64518747	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.79		2						4	2	2	1	2	3	82.691	74.991	2	6.6011E-13	40060	160513_QHF_FH_JSI9Kac_6	160.11	133.59			1.4677	1.3795	63.157	8	3	Median	1.3657	1.1427	31.796	2	0	Median	0.75323	0.90196	NaN	1	0	Median	1.5015	1.5163	73.128	2	1	Median	2.8616	3.1328	63.498	3	2	Median	715210000	245640000	469570000	220340000	95595000	124740000	23824000	13418000	10406000	159180000	50988000	108200000	311860000	85642000	226220000	8207	1573	7767	50937;50938;50939;50940;50941;50942;50943;50944	68785;68786;68787;68788;68789;68790;68791;68792;68793	68793			9	
DLGYMYFYR	0	Unmodified	1226.543	0.54303059	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0	By MS/MS		By MS/MS		9	7		1							1	1		1		80.497	75.868	2	0.0024498	69603	160511_QHF_FH_JSI11i_2	65.038	60.254			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8208	3920	7768	50945;50946	68794;68795	68794			2	
DLGYPFALSK	1	Unmodified	1109.5757	0.57571092	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		76.185	75.863	2	0.053966	68880	160511_QHF_FH_JSI11i_1	42.348	18.393			0.14073	0.13288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14073	0.13288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71866000	63848000	8018200	0	0	0	0	0	0	71866000	63848000	8018200	0	0	0	8209	204	7769	50947	68796	68796			1	
DLHDANTDLIGR	0	Unmodified	1338.6528	0.65279205	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	40.985	40.15	2	8.0229E-05	34294	160511_QHF_FH_JSI12i_2	93.442	80.175			0.9	0.89074	65.587	4	2	Median	1.2263	1.0607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65039	0.66694	107.04	2	2	Median	0.6605	0.74799	NaN	1	0	Median	259500000	144710000	114790000	58485000	28214000	30271000	0	0	0	148910000	85573000	63339000	52099000	30924000	21175000	8210	1812	7770	50948;50949;50950;50951	68797;68798;68799;68800;68801	68798			5	
DLHDANTDLIGRHPK	1	Unmodified	1700.8594	0.85943078	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.819	29.819	4	0.00019153	25746	160511_QHF_FH_JSI11i_3	83.729	76.69			0.92227	0.8524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92227	0.8524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	113450000	73490000	39956000	0	0	0	0	0	0	113450000	73490000	39956000	0	0	0	8211	1812	7771	50952	68802	68802			1	
DLHFEGMFK	1	Unmodified	1122.5168	0.51681584	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	66.354	65.522	2;3	0.0001966	57096	160511_QHF_FH_JSI11i_2	74.464	68.684			0.89397	0.97335	54.726	5	2	Median	2.7371	2.3963	NaN	1	1	Median	0.79087	0.97335	NaN	1	0	Median	0.67799	0.70195	43.04	2	1	Median	0.92419	0.97782	NaN	1	0	Median	134170000	63654000	70521000	13399000	4035100	9364000	33860000	14642000	19218000	63421000	35108000	28313000	23495000	9869400	13626000	8212	5179	7772	50953;50954;50955;50956;50957;50958;50959	68803;68804;68805;68806;68807;68808;68809;68810;68811	68808			9	
DLHHSNGEEK	1	Unmodified	1164.516	0.51596421	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.55	3.65		6	4					1		1	1	4	5	4.1936	3.9782	2;3	6.2473E-11	2152	160511_QHF_FH_JSI11i_2	145.72	101.95			0.38173	0.4085	97.518	10	4	Linear	1.2194	1.059	NaN	1	0	Median	0.842	1.0174	NaN	1	0	Median	1.9486	1.8732	147.01	4	2	Median	1.5747	1.6906	39.023	4	2	Median	1145000000	554440000	590610000	78108000	33025000	45083000	239140000	124350000	114790000	572790000	287450000	285340000	255010000	109620000	145390000	8213	2294	7773	50960;50961;50962;50963;50964;50965;50966;50967;50968;50969;50970	68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822	68816			11	
DLHNLMVDLR	0	Unmodified	1224.6285	0.62849155	4055	Q96ER9	CCDC51	Coiled-coil domain-containing protein 51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	71.828	71.001	3	0.00082756	63064	160511_QHF_FH_JSI10i_2	56.404	46.4			0.33293	0.85709	62.891	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.75849	0.97129	NaN	1	0	Median	0.44981	0.45063	73.23	2	2	Median	0.92277	1.0454	NaN	1	1	Median	56257000	34604000	21653000	0	0	0	13249000	6763900	6485300	32404000	22619000	9785900	10603000	5221100	5382100	8214	4055	7774	50971;50972;50973;50974;50975	68823;68824;68825;68826;68827;68828	68827			6	
DLHQGIEAASDEEDLR	0	Unmodified	1796.8177	0.81768512	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.329	46.918	2	3.2375E-11	42445	160511_QHF_FH_JSI11i_1	108.17	90.803			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8215	5378	7775	50976	68829	68829			1	
DLHTTAFK	1	Unmodified	931.47633	0.47633123	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.71	23.365	2	0.020002	19427	160511_QHF_FH_JSI11i_2	56.721	24.111			4.1115	4.2049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1115	4.2049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20713000	6527500	14185000	0	0	0	0	0	0	20713000	6527500	14185000	0	0	0	8216	2305	7776	50977	68830	68830			1	
DLHVSTGEFTDLK	1	Unmodified	1460.7147	0.7147236	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.751	61.443	3	0.009448	52807	160511_QHF_FH_JSI12i_2	26.232	22.168			1.2803	1.3592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2803	1.3592	NaN	1	0	Median	24013000	14653000	9360200	0	0	0	0	0	0	0	0	0	24013000	14653000	9360200	8217	316	7777	50978	68831	68831			1	
DLIADLK	1	Unmodified	786.44872	0.4487195	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	6.23	8					1	4			3	5	3	2	61.695	57.218	2	0.010374	53425	160511_QHF_FH_JSI12i_1	75.109	14.321			1.2678	1.4786	77.644	13	9	Median	1.2522	1.007	79.26	3	2	Median	1.2678	1.4786	92.587	5	4	Median	1.9005	1.8425	80.638	3	2	Median	1.4249	1.5108	87.714	2	1	Median	2076200000	1011700000	1064500000	517070000	209700000	307370000	513990000	250750000	263230000	727740000	359620000	368120000	317420000	191640000	125780000	8218	891	7778	50979;50980;50981;50982;50983;50984;50985;50986;50987;50988;50989;50990;50991	68832;68833;68834;68835;68836;68837;68838;68839;68840;68841;68842;68843;68844;68845;68846;68847;68848;68849;68850;68851	68838			20	
DLIDDATNLVQLYHVLHPDGQSAQGAK	1	Unmodified	2917.457	0.45699936	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.45	101.47	3	2.2977E-82	88127	160511_QHF_FH_JSI12i_3	226.03	206.49			0.75889	0.75031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75889	0.75031	NaN	1	0	Median	222480000	114250000	108230000	0	0	0	0	0	0	0	0	0	222480000	114250000	108230000	8219	2104	7779	50992	68852	68852			1	
DLIDFDDRQQIYAAEK	1	Unmodified	1938.9323	0.93232095	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			69.688	68.88	3	0.011117	61181	160511_QHF_FH_JSI10i_2	41.871	26.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8220	1085	7780	50993	68853	68853			1	
DLIEAIRR	0	Unmodified	984.57163	0.5716286	4384	Q9BRT3	MIEN1	Migration and invasion enhancer 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							3	2			45.531	44.284	3	0.0016072	38736	160511_QHF_FH_JSI9i_2	61.999	8.8329			0.86963	0.99799	90.444	5	2	Median	1.3198	1.0886	103.45	3	1	Median	0.54739	0.66531	57.345	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114570000	61503000	53066000	65208000	30043000	35165000	49361000	31460000	17901000	0	0	0	0	0	0	8221	4384	7781	50994;50995;50996;50997;50998	68854;68855;68856;68857;68858	68856			5	
DLIEDSSVQK	1	Unmodified	1132.5612	0.56118307	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			35.402	34.609	2	0.00036209	30937	160511_QHF_FH_JSI10i_1	89.886	49.618			1.395	1.3842	15.808	2	2	Median	1.8774	1.5479	NaN	1	1	Median	1.0365	1.2378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243100000	103340000	139760000	112290000	42148000	70138000	130820000	61196000	69620000	0	0	0	0	0	0	8222	3206	7782	50999;51000	68859;68860	68859			2	
DLIGFGLQVAK	1	Unmodified	1159.6601	0.66010926	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.049	88.313	2	0.0012798	77761	160511_QHF_FH_JSI11i_2	76.827	51.09			1.9397	2.0361	25.776	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7416	1.6968	NaN	1	1	Median	2.1602	2.4432	NaN	1	1	Median	20693000	6568100	14125000	0	0	0	0	0	0	9882100	2985600	6896500	10811000	3582600	7228800	8223	907	7783	51001;51002	68861;68862	68862			2	
DLIGIAK	1	Unmodified	728.44324	0.44324019	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.617	9	1	1							3	2	2	4	47.22	46.475	2	0.01496	42741	160511_QHF_FH_JSI11i_1	64.776	10.251			1.0359	1.0856	104.83	10	10	Median	1.0557	0.87257	141.76	2	2	Median	0.88417	1.0331	132.53	2	2	Median	1.0819	1.0638	127.32	2	2	Median	1.1497	1.1903	120.75	4	4	Median	1003600000	488500000	515140000	159210000	73129000	86086000	211970000	119990000	91975000	278220000	131060000	147150000	354240000	164310000	189930000	8224	3216	7784	51003;51004;51005;51006;51007;51008;51009;51010;51011;51012;51013	68863;68864;68865;68866;68867;68868;68869;68870;68871;68872;68873;68874;68875;68876;68877;68878;68879;68880	68863			18	
DLIGIDNLVVPGR	0	Unmodified	1379.7773	0.77726428	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	95.111	94.81	2	4.0554E-05	86020	160511_QHF_FH_JSI10i_1	115	88.49			0.63234	0.61212	41.013	6	5	Median	0.53752	0.43822	NaN	1	1	Median	1.0618	1.2093	NaN	1	0	Median	0.63234	0.61212	14.374	2	2	Median	0.75953	0.77669	49.458	2	2	Median	83326000	50918000	32408000	16227000	10567000	5659500	13763000	8151400	5611300	35289000	23239000	12049000	18048000	8960300	9087500	8225	5627	7785	51014;51015;51016;51017;51018;51019	68881;68882;68883;68884;68885;68886	68885			6	
DLIGVQNLLK	1	Unmodified	1111.6601	0.66010926	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	2	3	88.68	88.197	2	6.5943E-07	77549	160511_QHF_FH_JSI11i_2	121.62	81.617			0.50711	0.5039	95.943	7	7	Median	0.41121	0.35763	NaN	1	1	Median	1.1147	1.3365	139.46	2	2	Median	1.2171	1.2038	123.16	2	2	Median	0.47571	0.51031	38.822	2	2	Median	148910000	77095000	71813000	15095000	10264000	4831500	48299000	21147000	27153000	45581000	21480000	24101000	39932000	24204000	15728000	8226	2470	7786	51020;51021;51022;51023;51024;51025;51026;51027	68887;68888;68889;68890;68891;68892;68893;68894	68893			8	
DLIHDQDEDEEEEEGQR	0	Unmodified	2084.8407	0.84066499	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	29.631	28.977	2;3	3.9287E-17	25417	160511_QHF_FH_JSI9i_1	155.98	152.45			1.1333	1.1271	1.9378	4	1	Median	1.3404	1.0925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.164	1.1308	NaN	1	0	Median	1.0982	1.1333	1.2488	2	0	Median	200810000	96809000	104000000	21386000	7900900	13485000	0	0	0	42827000	21420000	21407000	136600000	67487000	69111000	8227	5453	7787	51028;51029;51030;51031;51032	68895;68896;68897;68898;68899;68900;68901;68902	68902			8	
DLIHDVSFDFHGR	0	Unmodified	1556.7372	0.73719038	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	70.073	69.924	4	0.00041068	60519	160511_QHF_FH_JSI12i_3	50.897	45.743			1.179	1.1752	3.6108	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2386	1.1456	NaN	1	0	Median	1.1222	1.2056	NaN	1	0	Median	41241000	20552000	20689000	0	0	0	0	0	0	21311000	10757000	10553000	19930000	9794700	10136000	8228	4042	7788	51033;51034	68903;68904	68904			2	
DLIHGAPVGKPAANR	1	Unmodified	1514.8318	0.83175947	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.864	29.864	3	0.02619	25826	160511_QHF_FH_JSI11i_3	39.509	26.631			1.6858	1.6151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6858	1.6151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26215000	9425500	16790000	0	0	0	0	0	0	26215000	9425500	16790000	0	0	0	8229	2560	7789	51035	68905	68905			1	
DLIIEQR	0	Unmodified	885.49198	0.4919813	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	38.926	38.308	2	0.0091282	33926	160511_QHF_FH_JSI9i_1	69.998	14.557			0.93443	0.91919	81.715	5	3	Median	2.6766	2.216	NaN	1	1	Median	0.53826	0.62472	NaN	1	0	Median	0.93443	0.91919	NaN	1	0	Median	1.165	1.206	134.72	2	2	Median	947770000	504430000	443350000	159700000	64544000	95158000	208340000	136840000	71496000	236140000	132350000	103780000	343590000	170690000	172910000	8230	2147	7790	51036;51037;51038;51039;51040;51041	68906;68907;68908;68909;68910;68911;68912	68912			7	
DLIKILK	2	Acetyl (K)	883.57425	0.57425436	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.7	0.471							1	2				2	1	81.706	71.162	2	0.017469	37655	160513_QHF_FH_JSI11Kac_5	84.244	9.8284			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18398000	18398000	0	0	0	0	0	0	0	17318000	17318000	0	1080100	1080100	0	8231	1579	7791	51042;51043;51044	68913;68914;68915	68914	1593		3	
DLILADYGK	1	Unmodified	1006.5335	0.53351176	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5	5.66	2					1					1		2	65.892	62.705	2	0.00013044	56631	160511_QHF_FH_JSI12i_1	91.069	44.002			0.44532	0.47517	39.779	3	2	Median	NaN	NaN	NaN	0	0	Median	0.25001	0.29571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53596	0.5565	22.346	2	1	Median	278220000	154160000	124070000	0	0	0	95880000	61031000	34849000	0	0	0	182340000	93125000	89218000	8232	3101	7792	51045;51046;51047	68916;68917;68918;68919	68916			4	
DLILNPR	0	Unmodified	839.4865	0.48650199	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.06	4	3					4			2	3	3	3	48.547	44.165	2	0.0036278	40509	160511_QHF_FH_JSI12i_1	103.28	73.477			0.97167	1.014	32.029	11	3	Median	1.3527	1.1457	14.443	2	0	Median	0.78952	0.95179	45.885	3	2	Median	0.97138	0.95934	2.0308	3	0	Median	1.0134	1.0411	45.165	3	1	Median	1458300000	538480000	919770000	255040000	89956000	165080000	275790000	138470000	137320000	471170000	191440000	279730000	456250000	118620000	337630000	8233	2665	7793	51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058	68920;68921;68922;68923;68924;68925;68926;68927;68928;68929;68930;68931;68932;68933;68934;68935;68936;68937;68938;68939	68923			20	
DLILPTIQK	1	Unmodified	1039.6277	0.6277465	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	8					2	4			2	4	4	4	75.083	71.02	2	1.4122E-05	65690	160511_QHF_FH_JSI11i_1	123.72	115.38			0.77737	0.7347	64.907	12	10	Median	1.5957	1.3091	86.737	2	2	Median	0.5792	0.67338	75.654	3	3	Median	0.93737	0.92352	79.936	3	2	Median	0.65224	0.70419	58.816	4	3	Median	1234700000	540230000	694480000	329040000	99615000	229430000	327770000	140120000	187650000	318360000	155730000	162630000	259540000	144770000	114770000	8234	3860	7794	51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069;51070;51071;51072	68940;68941;68942;68943;68944;68945;68946;68947;68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959	68941			20	
DLINLAK	1	Unmodified	785.4647	0.46470391	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	52.589	51.883	2	0.010009	47111	160511_QHF_FH_JSI12i_1	81.784	14.791			2.1299	2.461	104.44	7	7	Median	1.0912	0.90636	156.13	2	2	Median	2.1299	2.5106	NaN	1	1	Median	1.1986	1.1648	134.28	2	2	Median	0.99575	1.0196	124.61	2	2	Median	534630000	265460000	269170000	135030000	71576000	63451000	73290000	34261000	39029000	187220000	84568000	102650000	139090000	75055000	64039000	8235	1203	7795	51073;51074;51075;51076;51077;51078;51079	68960;68961;68962;68963;68964;68965;68966	68962			7	
DLINLAKK	2	Acetyl (K)	955.57023	0.57023162	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	1	0	0	1				By MS/MS	14	0							2						2	69.044	58.347	2	0.019059	31830	160513_QHF_FH_JSI12Kac_4	73.665	14.459			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3462200	744340	2717900	0	0	0	0	0	0	0	0	0	3462200	744340	2717900	8236	1203	7796	51080;51081	68967;68968	68967	1069		2	
DLIPYLEK	1	Unmodified	989.54335	0.54334816	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	3.68	7	3					1			2	3	3	3	74.576	74.004	2	0.0019582	67336	160511_QHF_FH_JSI11i_1	94.302	66.128			2.057	2.3096	90.331	10	10	Median	1.7935	1.4918	137.4	2	2	Median	1.0135	1.1799	105.85	2	2	Median	2.5226	2.4784	109.47	3	3	Median	1.9553	2.1865	96.341	3	3	Median	872000000	428750000	443250000	110710000	49177000	61533000	228790000	122580000	106210000	273160000	124540000	148620000	259340000	132450000	126890000	8237	552	7797	51082;51083;51084;51085;51086;51087;51088;51089;51090;51091;51092	68969;68970;68971;68972;68973;68974;68975;68976;68977;68978;68979	68970			11	
DLIQDQNMDEK	1	Unmodified	1347.5976	0.59764493	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									1	2	2		36.323	35.834	2	2.1046E-06	32182	160511_QHF_FH_JSI11i_1	121.6	98.863			0.36108	0.37684	127.63	5	5	Median	0.293	0.2387	NaN	1	1	Median	0.93815	1.1095	152.71	2	2	Median	1.0659	1.0249	154.44	2	2	Median	NaN	NaN	NaN	0	0	Median	445870000	243850000	202020000	69549000	47408000	22142000	165100000	87577000	77518000	211220000	108860000	102360000	0	0	0	8238	4686	7798	51093;51094;51095;51096;51097	68980;68981;68982;68983;68984	68981			5	
DLIQDQNMDEK	1	Oxidation (M)	1363.5926	0.59255956	4686	Q9H307	PNN	Pinin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.127	26.579	2	0.00058318	31474	160511_QHF_FH_JSI9i_1	85.807	72.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8239	4686	7798	51098;51099;51100;51101	68985;68986;68987;68988	68988		2513	4	
DLIQSDIAALHHFYSK	1	Unmodified	1856.9421	0.94209778	4955	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.603	83.541	4	0.00043358	72219	160511_QHF_FH_JSI12i_2	64.537	54.616			0.51807	0.55937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51807	0.55937	NaN	1	1	Median	12631000	8309200	4322200	0	0	0	0	0	0	0	0	0	12631000	8309200	4322200	8240	4955	7799	51102	68989	68989			1	
DLIQVVHEYTK	1	Unmodified	1343.7085	0.70851601	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.958	71.672	2	1.7934E-05	61802	160511_QHF_FH_JSI12i_2	131.28	107.96			1.4881	1.6515	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4881	1.6515	NaN	1	1	Median	11824000	3980000	7844400	0	0	0	0	0	0	0	0	0	11824000	3980000	7844400	8241	2899	7800	51103	68990	68990			1	
DLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINK	1	Unmodified	4173.09	0.089967164	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.29	103.29	4	1.7903E-06	90041	160511_QHF_FH_JSI12i_3	48.909	47.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34096000	34096000	0	0	0	0	0	0	0	0	0	0	34096000	34096000	0	8242	2296	7801	51104	68991	68991			1	
DLISHDEMFSDIYK	1	Unmodified	1711.7763	0.77633758	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.701	8	11	4							5	8	4	6	77.33	76.538	2;3	1.3847E-52	67466	160511_QHF_FH_JSI9i_2	223.71	197.67			0.89513	0.91287	24.279	21	1	Median	0.92088	0.76888	13.866	5	0	Median	0.76542	0.91287	26.006	7	1	Median	0.90282	0.89145	12.076	4	0	Median	1.0319	1.1287	37.194	5	0	Median	4519900000	2417500000	2102400000	695920000	343710000	352200000	1071900000	544260000	527610000	1439300000	800480000	638820000	1312800000	729050000	583750000	8243	1036	7802	51105;51106;51107;51108;51109;51110;51111;51112;51113;51114;51115;51116;51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127	68992;68993;68994;68995;68996;68997;68998;68999;69000;69001;69002;69003;69004;69005;69006;69007;69008;69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023;69024;69025;69026;69027;69028;69029;69030;69031;69032;69033;69034;69035;69036;69037;69038;69039;69040;69041;69042;69043;69044;69045;69046;69047	69029			53	
DLISHDEMFSDIYK	1	Oxidation (M)	1727.7713	0.7712522	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								1		2	3	65.506	64.457	2;3	0.00033095	55230	160511_QHF_FH_JSI12i_2	65.219	37.809			0.92698	1.041	19.257	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72835	0.76199	NaN	1	0	Median	0.97747	1.0618	2.7962	2	1	Median	70357000	41175000	29183000	0	0	0	0	0	0	22189000	12407000	9782000	48168000	28768000	19401000	8244	1036	7802	51128;51129;51130;51131;51132;51133	69048;69049;69050;69051;69052	69048		650	5	
DLIVAEA	0	Unmodified	729.39087	0.39087027	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.374	55.98	1	0.042744	50419	160511_QHF_FH_JSI10i_1	85.89	82.194			0.20438	0.23895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20438	0.23895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156560000	136640000	19924000	0	0	0	156560000	136640000	19924000	0	0	0	0	0	0	8245	1505	7803	51134	69053	69053			1	
DLIVATIAVK	1	Unmodified	1041.6434	0.64339656	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	76.454	75.817	2	7.0646E-07	68999	160511_QHF_FH_JSI12i_1	122.13	105.93			1.036	1.1029	85.766	8	8	Median	0.44573	0.37626	NaN	1	1	Median	0.67265	0.80364	159.33	2	2	Median	1.1133	1.1105	46.063	2	2	Median	1.3884	1.5171	87.892	3	3	Median	274570000	160720000	113850000	30649000	17067000	13582000	96073000	67110000	28963000	52783000	22534000	30249000	95061000	54010000	41051000	8246	1381	7804	51135;51136;51137;51138;51139;51140;51141;51142;51143	69054;69055;69056;69057;69058;69059;69060;69061;69062	69056			9	
DLIVSGDEK	1	Unmodified	974.49204	0.49204087	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	39.363	30.753	2	0.01014	17553	160513_QHF_FH_JSI12Kac_3	57.96	25.119			0.72904	0.78523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72904	0.78523	NaN	1	0	Median	6472800	3673200	2799500	0	0	0	0	0	0	0	0	0	6472800	3673200	2799500	8247	3736	7805	51144	69063	69063			1	
DLIYTLYYWK	1	Unmodified	1376.7016	0.70163972	1038	P13726	F3	Tissue factor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	92.41	84.828	2	3.9192E-07	45069	160513_QHF_FH_JSI12Kac_6	108.98	70.674			1.085	1.2335	145.64	2	2	Median	NaN	NaN	NaN	0	0	Median	0.36757	0.44044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.2026	3.4545	NaN	1	1	Median	67024000	36509000	30514000	0	0	0	39941000	31213000	8727800	0	0	0	27083000	5296500	21787000	8248	1038	7806	51145;51146	69064;69065	69064			2	
DLKDYFSK	2	Acetyl (K)	1056.5128	0.51277632	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		74.858	64.054	2	0.046015	34582	160513_QHF_FH_JSI11Kac_4	56.729	33.989			14.2	13.98	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.2	13.98	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2451400	100310	2351100	0	0	0	0	0	0	2451400	100310	2351100	0	0	0	8249	2488	7807	51147	69066	69066			1	
DLKDYFTK	2	Acetyl (K)	1070.5284	0.52842638	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		76.728	66.061	2	0.028082	35463	160513_QHF_FH_JSI11Kac_4	57.96	34.531			0.45676	0.49632	12.468	2	0	Median	NaN	NaN	NaN	0	0	Median	0.46006	0.54207	NaN	1	0	Median	0.45347	0.45444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16367000	9532400	6834700	0	0	0	12583000	7216700	5366100	3784400	2315700	1468600	0	0	0	8250	4308	7808	51148;51149	69067	69067			1	
DLKEEHLK	2	Acetyl (K)	1052.5502	0.55022446	3532	Q8N4T8	CBR4	Carbonyl reductase family member 4	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	34.283	25.114	2;3	0.019644	15120	160513_QHF_FH_JSI12Kac_4	67.993	43.838			1.0362	1.1281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.1281	NaN	1	1	Median	14194000	4474300	9719600	0	0	0	5001300	0	5001300	0	0	0	9192700	4474300	4718300	8251	3532	7809	51150;51151	69068;69069	69069	2881		2	
DLKHLIYYR	1	Acetyl (K)	1261.6819	0.68190733	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.318	68	3	0.01241	37192	160513_QHF_FH_JSI11Kac_6	50.284	30.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8059200	8059200	0	0	0	0	0	0	0	8059200	8059200	0	0	0	0	8252	3101	7810	51152	69070	69070	2768		1	
DLKPENILLDEEGHIK	2	Unmodified	1861.9785	0.97854286	2669;1755	Q15418;P51812;Q15349	RPS6KA1;RPS6KA3;RPS6KA2	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	4	3	4	70.403	69.692	3;4	5.3722E-05	60984	160511_QHF_FH_JSI11i_2	82.707	71.762			0.86245	0.87261	31.011	12	5	Median	0.88781	0.76306	20.915	2	1	Median	0.45927	0.57119	35.983	3	2	Plateau	0.60684	0.56703	35.717	3	1	Median	1.0621	1.1202	15.536	4	1	Median	1440500000	815330000	625200000	148150000	82246000	65904000	394190000	230790000	163400000	423890000	262410000	161480000	474300000	239880000	234420000	8253	2669;1755	7811	51153;51154;51155;51156;51157;51158;51159;51160;51161;51162;51163;51164;51165	69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089	69079			19	
DLKPENILVTSGGTVK	2	Unmodified	1669.9251	0.92505073	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	1.86	0.35	1	6								1	2	3	1	62.68	61.958	2;3	0.0030365	54448	160511_QHF_FH_JSI9i_2	47.754	43.363			1.0657	1.0744	31.34	7	4	Median	1.2881	1.0744	NaN	1	0	Median	0.80233	0.95762	44.585	2	1	Median	1.4818	1.4946	33.789	3	3	Median	0.83106	0.95206	NaN	1	0	Median	425410000	214460000	210950000	63693000	32563000	31130000	98292000	54813000	43479000	197830000	87836000	109990000	65599000	39253000	26347000	8254	1007	7812	51166;51167;51168;51169;51170;51171;51172	69090;69091;69092;69093;69094	69091			5	
DLKPENIMLNHQGHVK	2	Unmodified	1871.9676	0.96760102	1229	P23443	RPS6KB1	Ribosomal protein S6 kinase beta-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	39.95	39.754	4	0.013275	33844	160511_QHF_FH_JSI12i_3	36.193	25.854			0.61795	0.63078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61795	0.63078	NaN	1	0	Median	110010000	58020000	51987000	0	0	0	0	0	0	0	0	0	110010000	58020000	51987000	8255	1229	7813	51173	69095	69095			1	
DLKPENLLLASK	2	Unmodified	1339.7711	0.77111627	2439;2440	Q13555;Q13554;Q9UQM7;Q13557	CAMK2G;CAMK2B;CAMK2A;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	66.74	65.905	3	0.00063828	56756	160511_QHF_FH_JSI12i_2	62.162	56.66			1.1953	1.4117	55.024	5	4	Median	1.998	1.7563	NaN	1	1	Median	1.1406	1.4117	NaN	1	1	Median	1.0051	1.0269	100.02	2	2	Median	1.1953	1.3664	NaN	1	0	Median	234760000	114530000	120230000	31233000	9197700	22035000	40170000	21844000	18326000	115230000	61703000	53522000	48130000	21783000	26347000	8256	2439;2440	7814	51174;51175;51176;51177;51178	69096;69097;69098;69099;69100;69101;69102	69097			7	
DLKPENLLYYSQDEESK	2	Unmodified	2069.9793	0.97933072	3392	Q8IU85	CAMK1D	Calcium/calmodulin-dependent protein kinase type 1D	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		69.794	69.472	3	0.0028373	63060	160511_QHF_FH_JSI10i_1	53.278	43.748			1.6413	1.7251	43.011	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9893	2.3383	NaN	1	1	Median	1.3541	1.2727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159980000	52824000	107150000	0	0	0	88430000	26447000	61983000	71546000	26376000	45170000	0	0	0	8257	3392	7815	51179;51180	69103;69104	69104			2	
DLKPENVLLDAHMNAK	2	Unmodified	1806.9298	0.92981853	2356;1826	P54646;Q13131	PRKAA2;PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-2;5'-AMP-activated protein kinase catalytic subunit alpha-1	no	no	0	0	0	1			By MS/MS		3	0			1									1		61.659	61.659	3	0.00025496	54726	160511_QHF_FH_JSI11i_3	65.716	59.684			1.0028	0.95085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0028	0.95085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56852000	27400000	29453000	0	0	0	0	0	0	56852000	27400000	29453000	0	0	0	8258	1826;2356	7816	51181	69105	69105			1	
DLKPNGANILVTEENKK	3	Unmodified	1882.016	0.015991	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	2			By MS/MS		3	0			3									3		45.956	45.956	3;4	2.0468E-05	40576	160511_QHF_FH_JSI11i_3	95.094	73.861			0.41554	0.3913	94.076	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41554	0.3913	94.076	3	3	Median	NaN	NaN	NaN	0	0	Median	424560000	234960000	189600000	0	0	0	0	0	0	424560000	234960000	189600000	0	0	0	8259	3290	7817	51182;51183;51184	69106;69107;69108	69107			3	
DLKPQNLLIDDK	2	Unmodified	1410.7718	0.77184455	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.595	10	8	1							6	5	4	4	61.017	60.288	2;3	0.00012301	54619	160511_QHF_FH_JSI11i_1	74.769	65.948			0.78877	0.74825	57.445	19	13	Median	1.1155	0.91903	51.849	6	5	Median	0.72254	0.84389	71.414	5	4	Median	0.95633	0.92692	41.522	4	2	Linear	1.1213	1.153	58.119	4	2	Linear	2403400000	1268300000	1135100000	547140000	250200000	296930000	764570000	393080000	371490000	661850000	401070000	260780000	429870000	223950000	205920000	8260	850	7818	51185;51186;51187;51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199;51200;51201;51202;51203	69109;69110;69111;69112;69113;69114;69115;69116;69117;69118;69119;69120;69121;69122;69123;69124;69125;69126;69127;69128	69109			20	
DLKPQNLLIDDK	2	Acetyl (K)	1452.7824	0.78240924	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	79.752	71.449	2	0.030742	35383	160513_QHF_FH_JSI12Kac_3	52.725	27.066			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2155100	2155100	0	0	0	0	0	0	0	0	0	0	2155100	2155100	0	8261	850	7818	51204	69129	69129			1	
DLKPQNLLINR	1	Unmodified	1322.767	0.76703394	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		57.766	56.739	3	0.015386	50246	160511_QHF_FH_JSI11i_3	55.452	40.576			0.74257	1.0722	25.952	3	0	Plateau	1.3015	1.0722	NaN	1	0	Median	0.97097	1.1133	NaN	1	0	Median	0.74257	0.6978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	150580000	81297000	69285000	42016000	15065000	26951000	49618000	29434000	20185000	58947000	36797000	22149000	0	0	0	8262	2151	7819	51205;51206;51207	69130	69130			0	
DLKPQNLLINTEGAIK	2	Unmodified	1765.9938	0.993799	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	4	1	76.89	76.504	2;3	0.00036416	66343	160511_QHF_FH_JSI12i_3	73.279	61.364			0.83737	0.83255	23.498	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80987	0.80604	28.226	3	3	Median	0.8658	0.85993	NaN	1	1	Median	278830000	155070000	123760000	0	0	0	0	0	0	175300000	96996000	78307000	103520000	58073000	45449000	8263	1252	7820	51208;51209;51210;51211;51212;51213	69131;69132;69133;69134;69135;69136	69136			6	
DLKPSNIFLVDTK	2	Unmodified	1488.8188	0.81879474	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.067	73.2	3	0.00095882	64560	160511_QHF_FH_JSI9i_2	57.136	50.555			0.82784	0.96087	14.41	4	0	Linear	1.0434	0.8609	NaN	1	0	Median	0.88824	1.0724	NaN	1	0	Median	0.82983	0.82663	NaN	1	0	Median	0.96331	1.089	NaN	1	0	Median	157010000	83854000	73157000	26133000	10956000	15178000	42297000	21114000	21183000	53931000	31477000	22453000	34649000	20306000	14343000	8264	1162	7821	51214;51215;51216;51217	69137;69138;69139;69140;69141;69142;69143	69138			7	
DLKPSNILYVDESGNPESIR	1	Unmodified	2245.1226	0.12264092	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		72.083	72.083	3	7.5375E-05	64412	160511_QHF_FH_JSI11i_3	64.203	55.494			1.2991	1.2024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2991	1.2024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20214000	3623400	16591000	0	0	0	0	0	0	20214000	3623400	16591000	0	0	0	8265	1755	7822	51218;51219	69144;69145	69145			2	
DLKPVLDSYVFNDGSSR	1	Unmodified	1910.9374	0.93740633	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	81.244	80.64	3	7.2951E-05	69791	160511_QHF_FH_JSI12i_2	84.829	68.71			0.75674	0.82592	73.503	3	3	Median	NaN	NaN	NaN	0	0	Median	0.65664	0.81576	NaN	1	1	Median	3.2616	2.9318	NaN	1	1	Median	0.75674	0.82592	NaN	1	1	Median	71910000	33950000	37960000	0	0	0	19602000	14055000	5547500	34273000	8651200	25621000	18035000	11244000	6791100	8266	4319	7823	51220;51221;51222	69146;69147;69148	69147			3	
DLKSELSGNFEK	2	Acetyl (K)	1407.6882	0.6881745	1723	P50995	ANXA11	Annexin A11	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	79.274	70.953	2	0.0037012	35182	160513_QHF_FH_JSI12Kac_3	72.006	51.135			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1156700	1156700	0	0	0	0	0	0	0	0	0	0	1156700	1156700	0	8267	1723	7824	51223	69149	69149	1744		1	
DLKYTIENPR	1	Acetyl (K)	1289.6616	0.66156582	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		62.878	51.817	2	0.011195	29347	160513_QHF_FH_JSI11Kac_4	66.19	46.403			0.053405	0.05202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.053405	0.05202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10834000	10246000	588070	0	0	0	0	0	0	10834000	10246000	588070	0	0	0	8268	3213	7825	51224	69150	69150	2796		1	
DLLAAAK	1	Unmodified	700.41194	0.41194006	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	34.898	34.117	2	0.012077	30687	160511_QHF_FH_JSI12i_1	75.311	75.311			2.4377	2.0234	121.81	5	5	Median	1.1458	0.94841	107.16	2	2	Median	NaN	NaN	NaN	0	0	Median	2.8691	2.7346	NaN	1	1	Median	1.044	1.0809	199.5	2	2	Median	336310000	150640000	185670000	111360000	51065000	60296000	0	0	0	106190000	37179000	69012000	118760000	62391000	56365000	8269	5042	7826	51225;51226;51227;51228;51229	69151;69152;69153;69154;69155	69152			5	
DLLAGPSWAK	1	Unmodified	1056.5604	0.56039521	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	66.19	65.229	2	0.01557	59569	160511_QHF_FH_JSI12i_1	51.268	13.181			1.0347	1.1152	36.862	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0347	1.1152	36.862	2	2	Median	43020000	23030000	19990000	0	0	0	0	0	0	0	0	0	43020000	23030000	19990000	8270	4792	7827	51230;51231	69156;69157	69157			2	
DLLALEQSK	1	Unmodified	1015.555	0.55497548	3621	Q8NCN5	PDPR	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.336	55.942	2	0.0049632	50476	160511_QHF_FH_JSI10i_1	65.305	14.698			0.99908	1.1407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99908	1.1407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17571000	10768000	6802100	0	0	0	17571000	10768000	6802100	0	0	0	0	0	0	8271	3621	7828	51232	69158	69158			1	
DLLALFNSFKPK	2	Unmodified	1391.7813	0.78128702	4729	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	101.92	101.84	3	2.9362E-05	84441	160511_QHF_FH_JSI10i_3	95.417	63.355			0.85393	1.184	23.831	4	0	Linear	1.5015	1.2251	NaN	1	0	Median	1.1931	1.3959	NaN	1	0	Median	1.2393	1.1443	NaN	1	0	Median	0.79122	0.79979	NaN	1	0	Median	205220000	100490000	104730000	22212000	8853300	13358000	53711000	23522000	30190000	43915000	17686000	26229000	85383000	50428000	34955000	8272	4729	7829	51233;51234;51235;51236	69159;69160;69161	69160			3	
DLLDDLK	1	Unmodified	830.43855	0.43854874	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	3.58	8	1				1				2	3	2	3	63.004	61.564	2	0.0074664	52826	160511_QHF_FH_JSI11i_1	87.323	0			0.90847	0.95791	36.856	10	1	Median	1.1031	0.89421	8.5307	2	0	Median	0.90003	0.88592	14.368	3	0	Plateau	0.89841	0.87151	22.598	2	0	Median	0.9085	0.96608	64.127	3	1	Median	4998800000	2583700000	2415000000	1126700000	521200000	605470000	1301800000	698320000	603520000	1348600000	714500000	634100000	1221600000	649710000	571940000	8273	916	7830	51237;51238;51239;51240;51241;51242;51243;51244;51245;51246	69162;69163;69164;69165;69166;69167;69168;69169;69170;69171;69172;69173;69174;69175;69176;69177;69178;69179;69180;69181;69182;69183;69184;69185;69186;69187;69188;69189;69190;69191;69192;69193	69163			32	
DLLDLLVEAK	1	Unmodified	1127.6438	0.64379049	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	101.95	101.86	2	4.3156E-14	87726	160511_QHF_FH_JSI12i_2	160.59	144.05			0.76533	0.87657	20.523	7	1	Median	1.2765	1.0873	NaN	1	0	Median	0.70128	0.84276	5.5626	2	0	Median	0.78973	0.79469	40.023	2	0	Median	0.81843	0.87295	14.591	2	1	Median	2298200000	1197700000	1100500000	327610000	153450000	174160000	602240000	349580000	252660000	708610000	355880000	352730000	659710000	338790000	320920000	8274	154	7831	51247;51248;51249;51250;51251;51252;51253;51254;51255	69194;69195;69196;69197;69198;69199;69200;69201;69202;69203;69204;69205;69206	69196			13	
DLLDQILMLDPAK	1	Unmodified	1483.7956	0.79561646	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	2	2	102.72	102.64	2	2.3217E-23	93261	160511_QHF_FH_JSI12i_1	155.48	120.59			0.67934	0.68573	13.398	4	2	Median	NaN	NaN	NaN	0	0	Median	0.71452	0.83825	NaN	1	0	Median	0.69475	0.67999	10.931	2	2	Median	0.60195	0.64008	NaN	1	0	Median	214700000	116290000	98409000	0	0	0	90592000	42862000	47729000	97838000	60423000	37415000	26272000	13007000	13265000	8275	2432	7832	51256;51257;51258;51259;51260	69207;69208;69209;69210;69211;69212	69210			6	
DLLDTVLPHLYNETK	1	Unmodified	1769.92	0.91996535	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	99.009	98.858	2;3	8.2207E-30	85277	160511_QHF_FH_JSI12i_2	222.49	187.27			0.95882	0.94485	8.2092	8	0	Median	1.0582	0.90579	4.3514	2	0	Median	0.73757	0.91732	5.8022	2	0	Median	0.92548	0.93197	4.6648	2	0	Median	0.95882	1.0787	0.7497	2	0	Median	749730000	395310000	354420000	132240000	68542000	63696000	153380000	90565000	62813000	248830000	129440000	119390000	215280000	106760000	108520000	8276	3343	7833	51261;51262;51263;51264;51265;51266;51267;51268	69213;69214;69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229;69230;69231;69232;69233;69234;69235;69236;69237	69217			25	
DLLEGQAK	1	Unmodified	872.46035	0.46034682	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.46	24.901	2	0.0033742	21878	160511_QHF_FH_JSI10i_1	78.77	7.8577			0.39827	0.43189	17.059	4	4	Median	0.65307	0.53463	NaN	1	1	Median	0.36982	0.4292	NaN	1	1	Median	0.37668	0.35212	NaN	1	1	Median	0.42109	0.4346	NaN	1	1	Median	286590000	176030000	110560000	72574000	41199000	31375000	71364000	43518000	27846000	70142000	47192000	22950000	72507000	44118000	28388000	8277	4023	7834	51269;51270;51271;51272	69238;69239;69240;69241	69240			4	
DLLEPGCSVLLNHK	1	Unmodified	1593.8185	0.81847717	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	68.283	67.339	2;3	4.6719E-05	58955	160511_QHF_FH_JSI11i_2	83.53	79.467			1.2489	1.3337	46.606	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93971	0.95925	NaN	1	0	Median	1.6598	1.8543	NaN	1	0	Median	139830000	53652000	86180000	0	0	0	0	0	0	75712000	32915000	42797000	64120000	20737000	43383000	8278	1983	7835	51273;51274;51275	69242;69243;69244;69245;69246	69245			5	
DLLETTTK	1	Unmodified	919.48623	0.48622722	5679	Q9Y5T4	DNAJC15	DnaJ homolog subfamily C member 15	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		39.95	30.875	2	0.060018	17773	160513_QHF_FH_JSI11Kac_3	42.109	3.8709			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8279	5679	7836	51276	69247	69247			1	
DLLEVADVLEK	1	Unmodified	1242.6707	0.67073352	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	3	2	1	100.49	100.4	2	3.608E-07	88993	160511_QHF_FH_JSI10i_2	120.09	83.757			0.84048	0.69685	139.62	7	6	Median	0.84048	0.69685	NaN	1	0	Median	0.26529	0.32851	134.52	3	3	Median	1.2358	1.1992	209.17	2	2	Median	5.7556	5.9532	NaN	1	1	Median	576170000	279320000	296850000	85370000	39357000	46013000	245760000	149260000	96501000	172180000	71318000	100870000	72855000	19385000	53469000	8280	4832	7837	51277;51278;51279;51280;51281;51282;51283	69248;69249;69250;69251;69252;69253;69254;69255;69256;69257;69258;69259	69259			12	
DLLFDPLGGVK	1	Unmodified	1172.6441	0.64412484	5286	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		98.025	97.886	2	0.0022983	88826	160511_QHF_FH_JSI11i_1	72.928	51.628			0.35181	0.38086	46.819	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.35181	0.38086	NaN	1	1	Median	0.78862	0.75542	35.456	2	2	Median	NaN	NaN	NaN	0	0	Median	33240000	20553000	12687000	0	0	0	10868000	9268500	1600000	22372000	11284000	11087000	0	0	0	8281	5286	7838	51284;51285;51286	69260;69261;69262	69260			3	
DLLFGSIVAVDEPTRPIYR	0	Unmodified	2160.1579	0.15790421	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.8	3	1	1							2	1	1	1	98.631	98.504	3	0.0058864	85329	160511_QHF_FH_JSI12i_3	43.454	22.221			0.66402	0.86268	8.1728	4	0	Linear	1.0797	0.90104	7.5287	2	0	Median	0.65797	0.77866	NaN	1	0	Median	0.92611	0.87112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110090000	62989000	47103000	39563000	20255000	19308000	45735000	29985000	15750000	24794000	12750000	12044000	0	0	0	8282	3146	7839	51287;51288;51289;51290;51291	69263;69264	69264			2	
DLLFILTAK	1	Unmodified	1032.6219	0.62193284	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.47	6.98		7							8	3	4	4	4	97.766	93.246	2	2.2144E-09	90290	160511_QHF_FH_JSI10i_2	167.33	62.213			5.4306	6.0727	313.86	11	11	Median	0.91355	0.76698	473.1	2	2	Median	6.4417	8.0514	395.8	3	3	Median	1.2383	1.1763	322.05	3	3	Plateau	5.4306	6.0727	267.59	3	3	Median	2795300000	1288300000	1507000000	425360000	175530000	249830000	662420000	291140000	371280000	959790000	465910000	493890000	747720000	355730000	391990000	8283	2734	7840	51292;51293;51294;51295;51296;51297;51298;51299;51300;51301;51302;51303;51304;51305;51306	69265;69266;69267;69268;69269;69270;69271;69272;69273;69274;69275;69276;69277;69278;69279	69273			15	
DLLFQALGR	0	Unmodified	1031.5764	0.57637963	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		5						5		3	2	3	2	83.146	78.77	2	4.2032E-06	70665	160511_QHF_FH_JSI12i_2	136.11	50.001			0.93216	0.92859	49.488	8	5	Median	1.6434	1.4226	76.933	2	2	Median	0.88428	1.0481	29.711	2	1	Median	0.76565	0.75521	58.001	2	1	Median	0.69138	0.76693	39.634	2	1	Median	297180000	143490000	153690000	89753000	33442000	56312000	60412000	34723000	25689000	76944000	39490000	37454000	70071000	35840000	34231000	8284	4982	7841	51307;51308;51309;51310;51311;51312;51313;51314;51315;51316	69280;69281;69282;69283;69284;69285;69286;69287;69288;69289;69290;69291;69292	69281			13	
DLLFSQMYDK	1	Unmodified	1258.5904	0.59037471	3520	Q8N3P4	VPS8	Vacuolar protein sorting-associated protein 8 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	78.126	77.596	2	0.053966	70768	160511_QHF_FH_JSI12i_1	42.348	12.539			2.0726	2.1183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0726	2.1183	NaN	1	1	Median	9041900	2426600	6615200	0	0	0	0	0	0	0	0	0	9041900	2426600	6615200	8285	3520	7842	51317	69293	69293			1	
DLLGENFQK	1	Unmodified	1062.5346	0.53457439	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.329	52.665	2	0.015195	47851	160511_QHF_FH_JSI12i_1	54.712	20.916			0.44688	0.47377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44688	0.47377	NaN	1	1	Median	45157000	27967000	17189000	0	0	0	0	0	0	0	0	0	45157000	27967000	17189000	8286	3325	7843	51318	69294	69294			1	
DLLGFMLFYK	1	Unmodified	1245.6468	0.64676738	844	P06213	INSR	Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.898							2	1	3	1	3	1	1	55.732	45.766	2	0.029013	25420	160513_QHF_FH_JSI10Kac_4	44.447	0.63923			0.88073	0.99624	10.475	6	0	Median	1.3876	1.1436	NaN	1	0	Median	0.83195	0.99472	0.4038	3	0	Median	1.2682	1.2613	NaN	1	0	Median	0.93028	0.97748	NaN	1	0	Median	112940000	59650000	53286000	6397400	2084800	4312500	78394000	45093000	33300000	21173000	8682800	12490000	6972300	3789300	3183000	8287	844	7844	51319;51320;51321;51322;51323;51324	69295;69296	69295			2	
DLLGIIK	1	Unmodified	770.49019	0.49019038	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							2	3	2	1	79.289	78.715	2	0.014953	69089	160511_QHF_FH_JSI11i_2	64.803	0			0.49182	0.46471	80.735	8	8	Median	0.44685	0.39871	3.2682	2	2	Median	0.524	0.65067	72.758	3	3	Median	0.34464	0.34127	62.057	2	2	Median	2.3661	2.476	NaN	1	1	Median	104590000	64187000	40407000	20438000	13629000	6809100	44387000	27116000	17270000	34782000	22003000	12779000	4987700	1439000	3548700	8288	3868	7845	51325;51326;51327;51328;51329;51330;51331;51332	69297;69298;69299;69300;69301;69302;69303;69304;69305	69303			9	
DLLGLCEQK	1	Unmodified	1074.5379	0.53794521	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	56.196	55.624	2	0.0020825	50641	160511_QHF_FH_JSI12i_1	75.378	58.602			3.6013	3.7098	93.006	3	2	Plateau	NaN	NaN	NaN	0	0	Median	2.9756	3.5352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.576	1.6384	115.58	2	1	Median	218690000	75864000	142830000	0	0	0	59626000	24224000	35402000	0	0	0	159070000	51640000	107430000	8289	231	7846	51333;51334;51335	69306;69307;69308	69306			2	
DLLGLHNMK	1	Unmodified	1039.5485	0.54845032	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.93	49.404	3	0.00033133	42640	160511_QHF_FH_JSI11i_2	68.016	43.794			1.0976	1.0941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0976	1.0941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30658000	19099000	11560000	0	0	0	0	0	0	30658000	19099000	11560000	0	0	0	8290	3238	7847	51336	69309	69309			1	
DLLHIGTQAR	0	Unmodified	1122.6146	0.61455605	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		44.189	44.189	3	0.0092368	39044	160511_QHF_FH_JSI11i_3	37.144	19.335			1.1471	1.0585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1471	1.0585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20336000	10164000	10173000	0	0	0	0	0	0	20336000	10164000	10173000	0	0	0	8291	211	7848	51337	69310	69310			1	
DLLHLPELFSPGMLVR	0	Unmodified	1835.9968	0.99677588	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.3	102.31	3	0.00012103	89090	160511_QHF_FH_JSI12i_3	77.562	66.506			1.4654	1.421	1.7048	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5066	1.404	NaN	1	0	Median	1.4252	1.4383	NaN	1	1	Median	132850000	56170000	76679000	0	0	0	0	0	0	46692000	23933000	22759000	86157000	32237000	53921000	8292	2564	7849	51338;51339	69311;69312	69312			2	
DLLHPSLEEEK	1	Unmodified	1308.6561	0.65614609	3208	Q71UM5	RPS27L	40S ribosomal protein S27-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	5.09	4	8					2	1		3	4	4	4	52.061	49.207	2;3	4.8688E-10	44403	160511_QHF_FH_JSI10i_1	131.43	120.22			1.0126	1.0952	19.771	15	2	Median	1.2049	1.0245	24.756	3	1	Median	1.1305	1.1613	22.734	4	1	Linear	1.0757	1.0779	20.971	4	0	Median	1.0281	1.1354	5.755	4	0	Median	3655300000	1796600000	1858700000	506590000	232710000	273880000	790650000	376440000	414210000	1265100000	587140000	677990000	1092900000	600260000	492660000	8293	3208	7850	51340;51341;51342;51343;51344;51345;51346;51347;51348;51349;51350;51351;51352;51353;51354	69313;69314;69315;69316;69317;69318;69319;69320;69321;69322;69323;69324;69325;69326;69327;69328;69329;69330;69331;69332;69333;69334;69335;69336	69324			24	
DLLHPSPEEEK	1	Unmodified	1292.6248	0.62484596	1541	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	5.16	9	9	1				4	1		7	6	4	7	35.75	32.924	2;3	7.8007E-08	28942	160511_QHF_FH_JSI9i_1	119.45	102.51			1.012	0.99302	43.635	23	5	Median	1.1538	0.92052	27.566	7	3	Median	0.83349	0.98568	29.257	6	1	Median	0.93915	0.90979	93.869	4	1	Median	1.0505	1.1363	19.268	6	0	Median	13624000000	6456400000	7167400000	3571300000	1675800000	1895500000	3460600000	1813100000	1647500000	3858400000	1691600000	2166800000	2733500000	1275900000	1457600000	8294	1541	7851	51355;51356;51357;51358;51359;51360;51361;51362;51363;51364;51365;51366;51367;51368;51369;51370;51371;51372;51373;51374;51375;51376;51377;51378	69337;69338;69339;69340;69341;69342;69343;69344;69345;69346;69347;69348;69349;69350;69351;69352;69353;69354;69355;69356;69357;69358;69359;69360;69361;69362;69363;69364;69365;69366;69367;69368;69369;69370;69371;69372;69373;69374;69375;69376;69377;69378;69379;69380;69381;69382;69383	69365			47	
DLLHPSPEEEKR	1	Unmodified	1448.726	0.72595699	1541	P42677	RPS27	40S ribosomal protein S27	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		7.4737	7.2774	3	0.06107	5022	160511_QHF_FH_JSI11i_2	16.137	5.5274			1.4145	1.4071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4145	1.4071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43246000	22453000	20793000	0	0	0	0	0	0	43246000	22453000	20793000	0	0	0	8295	1541	7852	51379	69384	69384			1	
DLLHPSPEEEKRK	2	Acetyl (K)	1618.8315	0.83148469	1541	P42677	RPS27	40S ribosomal protein S27	yes	yes	1	0	0	2		By matching	By MS/MS		15	0								2			1	1		42.516	32.456	4	0.0012868	18500	160513_QHF_FH_JSI11Kac_5	67.964	60.762			0.73029	0.78989	136.62	2	0	Median	NaN	NaN	NaN	0	0	Median	1.764	2.0755	NaN	1	0	Median	0.30234	0.30061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22381000	15395000	6986000	0	0	0	3524500	1764800	1759700	18857000	13630000	5226300	0	0	0	8296	1541	7853	51380;51381	69385	69385	1553		1	
DLLIAYYDVDYEK	1	Unmodified	1618.7767	0.77665516	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	12	3								5	1	2	7	91.385	90.867	2;3	1.4695E-31	82197	160511_QHF_FH_JSI11i_1	196.48	162.62			0.7286	0.72043	55.575	12	9	Median	0.79595	0.66857	50.359	3	2	Plateau	0.65836	0.78237	NaN	1	0	Median	0.68522	0.66339	NaN	1	0	Median	0.54328	0.59504	65.143	7	7	Median	1644600000	883810000	760740000	169310000	90428000	78883000	444460000	258920000	185540000	279230000	129270000	149970000	751550000	405190000	346360000	8297	1344	7854	51382;51383;51384;51385;51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396	69386;69387;69388;69389;69390;69391;69392;69393;69394;69395;69396;69397;69398;69399;69400;69401;69402;69403;69404;69405;69406;69407;69408;69409;69410;69411;69412;69413;69414;69415;69416;69417	69388			32	
DLLIDEWK	1	Unmodified	1030.5335	0.53351176	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	79.096	78.613	2	0.0056357	71623	160511_QHF_FH_JSI12i_1	73.248	36.853			1.1392	1.1409	38.673	5	3	Median	1.1392	0.92825	NaN	1	0	Median	0.98022	1.1409	NaN	1	1	Median	1.2297	1.1798	NaN	1	0	Median	0.91951	0.95385	73.946	2	2	Median	134690000	65749000	68937000	16567000	6798100	9768800	41437000	21533000	19904000	31109000	14834000	16276000	45573000	22584000	22989000	8298	2736	7855	51397;51398;51399;51400;51401	69418;69419;69420;69421;69422	69420			5	
DLLILQQLLMR	0	Unmodified	1354.8006	0.80064226	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.32		5							2	1	2	3	1	102.05	99.821	2	5.4205E-32	51568	160513_QHF_FH_JSI11Kac_6	201.58	153.71			0.29146	0.28548	291.57	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29146	0.28548	291.57	2	2	Median	NaN	NaN	NaN	0	0	Median	461190000	212890000	248300000	28284000	0	28284000	162460000	140150000	22317000	226080000	72744000	153330000	44369000	0	44369000	8299	2303	7856	51402;51403;51404;51405;51406;51407;51408	69423;69424;69425;69426;69427;69428;69429	69424			7	
DLLKANVEK	2	Acetyl (K)	1070.5972	0.59717465	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		55.765	46.189	2	0.031996	24889	160513_QHF_FH_JSI11Kac_3	57.96	25.119			0.25334	0.24107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25334	0.24107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1864000	1681300	182720	0	0	0	0	0	0	1864000	1681300	182720	0	0	0	8300	4793	7857	51409	69430	69430	3232		1	
DLLKANVK	2	Acetyl (K)	941.55458	0.55458155	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.484						5	3				2	3	3	52.534	42.724	2	0.00089069	23702	160513_QHF_FH_JSI11Kac_3	98.997	40.079			3.0411	5.3539	31.992	3	3	Plateau	NaN	NaN	NaN	0	0	Median	4.5429	5.3955	NaN	1	1	Median	3.0411	3.0356	NaN	1	1	Median	2.9081	3.1747	NaN	1	1	Median	60169000	41710000	18459000	0	0	0	10752000	3027000	7724900	33496000	28340000	5156100	15921000	10343000	5577800	8301	1503	7858	51410;51411;51412;51413;51414;51415;51416;51417	69431;69432;69433;69434;69435;69436;69437;69438	69433	1520;1521		8	
DLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALSALTAR	0	Unmodified	4255.2376	0.23761768	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	103.76	96.796	3;4	8.936E-139	58006	160513_QHF_FH_JSI10Kac_6	227.89	214.45			0.60172	0.72086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60172	0.72086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	657880000	536140000	121740000	0	0	0	544500000	422760000	121740000	0	0	0	113370000	113370000	0	8302	817	7859	51418;51419;51420	69439;69440;69441;69442	69441			4	
DLLLNTMSQEEK	1	Unmodified	1419.6915	0.69154532	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.45	5.65	8					1	2			2	3	2	4	67.593	64.45	2	6.6489E-34	58791	160511_QHF_FH_JSI12i_1	242.88	200.77			0.87309	0.93186	85.302	11	10	Median	1.0524	0.85806	119.07	2	2	Median	0.65341	0.75487	94.877	3	3	Median	0.67187	0.64925	143.32	2	2	Median	1.1144	1.2021	69.775	4	3	Median	4665700000	2496100000	2169700000	1359100000	631680000	727470000	978760000	626190000	352570000	1037900000	553250000	484610000	1290000000	684950000	605010000	8303	2094	7860	51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431	69443;69444;69445;69446;69447;69448;69449;69450;69451;69452;69453;69454;69455	69447			13	
DLLLNTMSQEEK	1	Oxidation (M)	1435.6865	0.68645994	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						2						1	1	55.819	46.243	2	0.024245	24774	160513_QHF_FH_JSI12Kac_3	56.563	26.754			1.3926	1.3428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3926	1.3428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3145700	1455600	1690100	0	0	0	0	0	0	3145700	1455600	1690100	0	0	0	8304	2094	7860	51432;51433	69456;69457	69457			2	
DLLLPIK	1	Unmodified	810.52149	0.52149051	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							3	1	3	2	75.891	75.096	2	0.0075188	66131	160511_QHF_FH_JSI9i_2	88.734	10.986			0.6156	0.62631	72.108	8	8	Median	1.2985	1.1192	79.724	2	2	Median	0.50088	0.61586	NaN	1	1	Median	0.48476	0.46408	88.657	3	3	Median	0.78061	0.86687	103.51	2	2	Median	263810000	142540000	121270000	54535000	24323000	30212000	21392000	13177000	8214900	120050000	63691000	56355000	67832000	41346000	26486000	8305	2985	7861	51434;51435;51436;51437;51438;51439;51440;51441;51442	69458;69459;69460;69461;69462;69463;69464;69465;69466;69467	69462			10	
DLLLTPK	1	Unmodified	798.48511	0.485105	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	51.105	50.431	2	0.010964	44869	160511_QHF_FH_JSI9i_1	79.116	0			0.97082	1.0673	83.445	8	8	Median	1.3216	1.0797	119.61	2	2	Median	0.72052	0.85226	107.89	2	2	Median	0.90674	0.8638	117.97	2	2	Median	1.1208	1.1487	86.469	2	2	Median	497860000	257040000	240820000	106720000	43887000	62835000	107620000	64047000	43572000	151490000	83817000	67670000	132030000	65284000	66744000	8306	2332	7862	51443;51444;51445;51446;51447;51448;51449;51450	69468;69469;69470;69471;69472;69473;69474;69475;69476;69477;69478;69479	69478			12	
DLLLTSSYLSDSGSTGEHTK	1	Unmodified	2110.0066	0.0066081055	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.87	5.96	17	17	13				9	9	3	17	19	16	16	70.836	67.147	2;3	6.9896E-153	58453	160511_QHF_FH_JSI12i_2	343.96	330.53			0.84476	0.77913	99.932	57	54	Median	1.1362	0.58751	92.187	16	14	Median	0.69802	0.83549	101.97	15	14	Median	0.75102	0.73997	115.52	12	12	Median	1.1455	1.1972	101.84	14	14	Median	27783000000	14970000000	12813000000	5232200000	2686100000	2546100000	8102300000	4595600000	3506700000	7591200000	3887300000	3703900000	6857100000	3800600000	3056500000	8307	895	7863	51451;51452;51453;51454;51455;51456;51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472;51473;51474;51475;51476;51477;51478;51479;51480;51481;51482;51483;51484;51485;51486;51487;51488;51489;51490;51491;51492;51493;51494;51495;51496;51497;51498;51499;51500;51501;51502;51503;51504;51505;51506;51507;51508;51509;51510;51511;51512;51513;51514;51515;51516;51517;51518	69480;69481;69482;69483;69484;69485;69486;69487;69488;69489;69490;69491;69492;69493;69494;69495;69496;69497;69498;69499;69500;69501;69502;69503;69504;69505;69506;69507;69508;69509;69510;69511;69512;69513;69514;69515;69516;69517;69518;69519;69520;69521;69522;69523;69524;69525;69526;69527;69528;69529;69530;69531;69532;69533;69534;69535;69536;69537;69538;69539;69540;69541;69542;69543;69544;69545;69546;69547;69548;69549;69550;69551;69552;69553;69554;69555;69556;69557;69558;69559;69560;69561;69562;69563;69564;69565;69566;69567;69568;69569;69570;69571;69572;69573;69574;69575;69576;69577	69496			98	
DLLNCSFK	1	Unmodified	995.47462	0.47461667	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.104	51.608	2	0.0029382	46793	160511_QHF_FH_JSI12i_1	83.265	59.11			0.30291	0.35454	108.43	3	3	Median	NaN	NaN	NaN	0	0	Median	0.30291	0.35454	NaN	1	1	Median	0.24438	0.23095	NaN	1	1	Median	1.754	1.8034	NaN	1	1	Median	153760000	88759000	65003000	0	0	0	40583000	24507000	16076000	66177000	43341000	22835000	47003000	20911000	26092000	8308	1566	7864	51519;51520;51521	69578;69579;69580	69579			3	
DLLNGVKPQDIDFATTATPTQMK	2	Unmodified	2503.2628	0.26283957	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	86.279	85.95	3	5.7417E-06	78286	160511_QHF_FH_JSI11i_1	64.488	56.776			0.71062	0.70406	31.583	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92049	1.0496	NaN	1	0	Median	0.71062	0.70406	NaN	1	0	Median	1.2588	1.3134	NaN	1	0	Median	68560000	33898000	34661000	0	0	0	21507000	11728000	9779100	26964000	13929000	13035000	20089000	8241800	11847000	8309	4204	7865	51522;51523;51524	69581;69582	69581			2	
DLLNMYIETEGK	1	Unmodified	1424.6857	0.68573166	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								3	1	3	3	81.779	81.181	2	1.2965E-22	73652	160511_QHF_FH_JSI10i_1	171.62	151.33			1.2041	1.1962	76.149	10	9	Median	1.7796	1.5141	74.574	3	3	Median	0.81468	0.94509	NaN	1	0	Median	1.0501	0.99182	98.775	3	3	Plateau	0.66085	0.70894	98.293	3	3	Median	664220000	320330000	343890000	87159000	33425000	53735000	162910000	97119000	65787000	170920000	89187000	81733000	243230000	100600000	142630000	8310	3852	7866	51525;51526;51527;51528;51529;51530;51531;51532;51533;51534	69583;69584;69585;69586;69587;69588;69589;69590;69591;69592;69593	69588			11	
DLLPGEYVQMAGR	0	Unmodified	1447.7129	0.71294946	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.101	72.526	2	0.0017638	65994	160511_QHF_FH_JSI12i_1	60.598	38.605			1.5203	1.6145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5203	1.6145	NaN	1	0	Median	49522000	18904000	30618000	0	0	0	0	0	0	0	0	0	49522000	18904000	30618000	8311	2677	7867	51535	69594	69594			1	
DLLPSDMAVALLEAQAGTGHIIDPATSAR	0	Unmodified	2932.4964	0.49642133	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	102.15	102.03	3	6.2493E-23	89835	160511_QHF_FH_JSI11i_2	123.89	112.78			1.1915	1.1764	11.575	3	0	Plateau	1.2908	1.098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1851	1.1764	NaN	1	0	Median	1.2489	1.3763	NaN	1	0	Median	536730000	241630000	295100000	143680000	60891000	82788000	0	0	0	213810000	101450000	112360000	179240000	79285000	99953000	8312	2636	7868	51536;51537;51538	69595	69595			1	
DLLPYGFAIHHAGMTR	0	Unmodified	1797.8985	0.89845882	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	5	2	2	74.028	70.033	3;4	2.1338E-05	62800	160511_QHF_FH_JSI11i_3	66.673	60.769			0.97148	1.0694	15.196	12	1	Median	1.4159	1.2134	10.315	3	1	Median	0.77398	0.90237	10.611	5	0	Median	1.2411	1.1725	11.439	2	0	Median	0.92431	0.97206	11.924	2	0	Median	704420000	331230000	373180000	88957000	39698000	49259000	346100000	172360000	173740000	160870000	59382000	101490000	108490000	59788000	48700000	8313	552	7869	51539;51540;51541;51542;51543;51544;51545;51546;51547;51548;51549;51550	69596;69597;69598;69599;69600;69601;69602;69603;69604;69605;69606;69607;69608;69609;69610	69597			13	
DLLQDLK	1	Unmodified	843.47018	0.47018322	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	61.52	60.839	2	0.0084984	55109	160511_QHF_FH_JSI10i_1	83.206	4.0901			1.3376	1.4409	56.501	6	5	Median	1.0892	0.89546	91.567	2	2	Median	1.0451	1.2135	NaN	1	0	Median	1.3073	1.2289	65.102	2	2	Median	1.7119	1.7985	NaN	1	1	Median	378080000	194370000	183710000	123380000	71618000	51759000	70334000	34403000	35931000	135560000	65521000	70042000	48805000	22828000	25977000	8314	3090	7870	51551;51552;51553;51554;51555;51556	69611;69612;69613;69614;69615;69616;69617	69615			7	
DLLQFFK	1	Unmodified	909.496	0.49600404	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							2	3	3	2	96.79	96.573	2	0.0053397	84694	160511_QHF_FH_JSI11i_2	111.28	58.595			0.40269	0.4353	141.02	9	9	Median	0.84423	0.73346	268.73	2	2	Median	0.89234	1.0999	131.96	3	3	Plateau	1.1517	1.1623	155.85	2	2	Median	1.1372	1.2343	147.39	2	2	Median	186900000	91296000	95605000	38017000	25143000	12874000	45899000	21936000	23963000	59552000	24357000	35195000	43433000	19860000	23573000	8315	3922	7871	51557;51558;51559;51560;51561;51562;51563;51564;51565;51566	69618;69619;69620;69621;69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633	69629			16	
DLLQFFKPR	1	Unmodified	1162.6499	0.64987892	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	0.258		1	13							5	3	3	3	86.687	86.066	2;3	8.7294E-05	70702	160511_QHF_FH_JSI9i_3	133.55	121.32			1.9724	2.0474	116.33	13	13	Median	1.6149	1.3065	159.66	4	4	Median	1.3248	1.4409	113.52	3	3	Median	2.7521	2.5125	119.87	3	3	Median	0.32816	0.32464	122.14	3	3	Plateau	660250000	314400000	345850000	183670000	73059000	110610000	118200000	67563000	50639000	242140000	102690000	139450000	116240000	71091000	45150000	8316	3922	7872	51567;51568;51569;51570;51571;51572;51573;51574;51575;51576;51577;51578;51579;51580	69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655	69646			22	
DLLQFFKPR	1	Acetyl (K)	1204.6604	0.66044361	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			1	2	93.287	83.865	2	5.7123E-11	45332	160513_QHF_FH_JSI12Kac_6	152.47	77.356			1.3059	1.1972	241.03	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3059	1.1972	NaN	1	0	Median	0.51965	0.56262	335.24	2	2	Median	106720000	56613000	50104000	0	0	0	0	0	0	57372000	33327000	24045000	49345000	23286000	26059000	8317	3922	7872	51581;51582;51583	69656;69657;69658;69659	69658	3003		4	
DLLQIIFSFSK	1	Unmodified	1309.7282	0.72818882	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	1	2	1	102.04	96.382	2	1.6013E-35	50558	160513_QHF_FH_JSI12Kac_6	193.52	170.78			1.8383	1.8497	73.47	6	5	Median	1.7253	1.5189	113	2	2	Median	3.0651	3.7002	NaN	1	1	Median	1.8383	1.8497	15.479	2	2	Median	0.6739	0.71204	NaN	1	0	Median	931900000	343060000	588840000	333160000	65942000	267220000	270170000	91182000	178990000	59466000	20916000	38550000	269100000	165020000	104080000	8318	1544	7873	51584;51585;51586;51587;51588;51589	69660;69661;69662;69663;69664;69665;69666	69664			7	
DLLQNLLK	1	Unmodified	955.57023	0.57023162	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	2	2	88.15	87.706	2	0.00024028	75518	160511_QHF_FH_JSI12i_2	117.17	44.936			0.89416	0.98996	24.797	8	2	Median	1.2704	1.1051	NaN	1	0	Median	0.82263	0.98096	30.215	3	2	Median	0.7823	0.7788	38.791	2	0	Median	0.89416	0.92789	10.45	2	0	Median	146840000	79519000	67318000	19250000	7687400	11563000	40914000	22960000	17954000	44239000	26953000	17287000	42433000	21919000	20514000	8319	2151	7874	51590;51591;51592;51593;51594;51595;51596;51597	69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679	69668			13	
DLLQQVPNAHK	1	Unmodified	1261.6779	0.67788459	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				40.424	39.377	2	0.0013765	34407	160511_QHF_FH_JSI9i_2	68.735	54.528			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8320	3276	7875	51598	69680	69680			1	
DLLQSSYNK	1	Unmodified	1066.5295	0.52948901	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.66	2					4				1	1	3	1	43.668	34.579	2	0.00022282	30725	160511_QHF_FH_JSI9i_1	89.355	63.618			0.62587	0.63367	77	4	4	Median	NaN	NaN	NaN	0	0	Median	0.41973	0.47828	NaN	1	1	Median	1.3977	1.3469	93.581	2	2	Median	0.54965	0.57781	NaN	1	1	Median	8731100	4348000	4383100	0	0	0	1674600	1156400	518160	5602000	2280900	3321100	1454500	910700	543790	8321	1733	7876	51599;51600;51601;51602;51603;51604	69681;69682;69683;69684;69685;69686	69684			6	
DLLSHENAATLNDVK	1	Unmodified	1638.8213	0.82131394	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	50.495	50.08	2	6.5677E-12	42722	160511_QHF_FH_JSI12i_2	112.44	84.424			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15991000	15991000	0	0	0	0	0	0	0	15991000	15991000	0	0	0	0	8322	3635	7877	51605;51606	69687;69688	69688			2	
DLLSQMHHYNAGVK	1	Unmodified	1611.7828	0.78276036	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	49.106	48.254	3	0.00050641	42301	160511_QHF_FH_JSI11i_3	57.328	29.122			1.308	1.2074	42.627	4	3	Median	1.6332	1.4609	NaN	1	1	Median	1.5871	1.9125	NaN	1	1	Median	1.078	0.99798	NaN	1	0	Median	0.65312	0.72395	NaN	1	1	Median	291630000	146130000	145500000	48163000	23489000	24674000	92816000	36259000	56557000	72674000	31094000	41580000	77976000	55288000	22688000	8323	5106	7878	51607;51608;51609;51610	69689;69690;69691;69692;69693	69690			5	
DLLSSVSR	0	Unmodified	875.47125	0.47124585	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	46.905	42	2	0.0011491	38436	160511_QHF_FH_JSI11i_1	93.374	28.122			0.96623	1.0785	14.564	7	1	Median	1.4634	1.2081	NaN	1	0	Median	0.8583	1.0197	7.9307	2	1	Median	1.3031	1.271	14.025	2	0	Median	0.91006	0.96602	7.527	2	0	Median	980500000	489690000	490810000	155080000	72972000	82107000	273200000	144600000	128600000	299350000	156360000	142990000	252870000	115750000	137110000	8324	1170	7879	51611;51612;51613;51614;51615;51616;51617	69694;69695;69696;69697;69698;69699;69700;69701;69702	69695			9	
DLLSTQPSETLASSDSFASTQPTHSWK	1	Unmodified	2920.3727	0.37266061	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								1	4	2	77.637	77.142	3	1.4996E-34	67870	160511_QHF_FH_JSI11i_2	157.31	143.08			0.93098	0.92764	28.351	7	5	Median	NaN	NaN	NaN	0	0	Median	0.59461	0.71847	NaN	1	0	Median	1.025	0.94939	16.384	4	4	Median	0.66315	0.71722	46.076	2	1	Median	397300000	219080000	178220000	0	0	0	65232000	39664000	25569000	223980000	113880000	110090000	108090000	65531000	42560000	8325	588	7880	51618;51619;51620;51621;51622;51623;51624	69703;69704;69705;69706;69707;69708;69709;69710;69711;69712;69713;69714	69709			12	
DLLTELQK	1	Unmodified	958.53351	0.53351176	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	65.567	62.942	2	0.0017787	56194	160511_QHF_FH_JSI9i_1	85.064	29.053			1.1527	1.1854	22.735	5	1	Median	1.4826	1.2101	NaN	1	0	Median	0.68812	0.81197	NaN	1	0	Median	1.0023	0.97751	NaN	1	0	Median	1.2447	1.3226	15.488	2	1	Median	346050000	169450000	176600000	102730000	54154000	48576000	83123000	43113000	40010000	86456000	35350000	51106000	73743000	36832000	36911000	8326	3328	7881	51625;51626;51627;51628;51629	69715;69716;69717;69718;69719;69720;69721;69722;69723;69724;69725	69724			11	
DLLTPVSR	0	Unmodified	899.50763	0.50763136	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.863	44.192	2	0.0026468	39297	160511_QHF_FH_JSI9i_1	78.516	29.158			1.1001	1.0802	6.6538	4	0	Median	1.3156	1.082	NaN	1	0	Median	0.82918	0.96333	NaN	1	0	Median	1.0968	1.0783	NaN	1	0	Median	1.1035	1.1239	NaN	1	0	Median	347810000	177730000	170080000	84735000	40718000	44017000	86947000	48620000	38327000	91587000	41123000	50465000	84537000	47268000	37269000	8327	4578	7882	51630;51631;51632;51633	69726;69727;69728;69729;69730;69731;69732;69733	69733			8	
DLLVHWCHGAPGVIYMLIQAYK	1	Unmodified	2583.313	0.31304142	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.539	90.819	4	1.8401E-13	52660	160513_QHF_FH_JSI10Kac_6	108.49	95.166			0.6853	0.8003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6853	0.8003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195580000	95700000	99876000	0	0	0	195580000	95700000	99876000	0	0	0	0	0	0	8328	380	7883	51634	69734	69734			1	
DLLVLLNEILEQVK	1	Unmodified	1637.9604	0.9603736	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	3		1	105.36	98.398	2;3	2.8027E-105	58910	160513_QHF_FH_JSI10Kac_6	245.94	153.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163780000	163780000	0	0	0	0	160020000	160020000	0	0	0	0	3756200	3756200	0	8329	4337	7884	51635;51636;51637;51638;51639;51640	69735;69736;69737;69738;69739;69740	69740			6	
DLLVQYATGK	1	Unmodified	1106.5972	0.59717465	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		69.817	58.822	2	0.026592	32397	160513_QHF_FH_JSI11Kac_4	48.283	30.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8330	5051	7885	51641	69741	69741			1	
DLLVTGAYEISDQSGGAGGLR	0	Unmodified	2078.028	0.02801225	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	82.061	81.627	2;3	2.2891E-211	74183	160511_QHF_FH_JSI10i_1	324.48	278.56			0.97995	0.89295	25.792	9	4	Median	1.0314	0.84834	7.2471	2	0	Median	0.75464	0.90059	19.127	3	2	Median	1.2798	1.2371	50.741	2	1	Median	0.9787	1.0028	22.884	2	1	Median	1370900000	667020000	703890000	206840000	92301000	114540000	608880000	309640000	299240000	272690000	119320000	153360000	282510000	145760000	136750000	8331	1678	7886	51642;51643;51644;51645;51646;51647;51648;51649;51650	69742;69743;69744;69745;69746;69747;69748;69749;69750;69751;69752;69753;69754;69755;69756	69750			15	
DLLYFDGLRK	1	Unmodified	1238.6659	0.66592292	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	72.577	71.844	2;3	0.0042903	61872	160511_QHF_FH_JSI12i_2	49.5	46.711			0.56697	0.53895	102.41	10	10	Median	1.4086	1.2106	96.196	2	2	Median	0.83646	1.0306	109.92	2	2	Median	3.7909	0.27433	152.58	3	3	Plateau	0.2639	0.28001	95.899	3	3	Plateau	157460000	89936000	67526000	22711000	10207000	12504000	38108000	22037000	16070000	51996000	27901000	24095000	44647000	29791000	14856000	8332	5608	7887	51651;51652;51653;51654;51655;51656;51657;51658;51659;51660	69757;69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768	69758			12	
DLMACAQTGSGK	1	Oxidation (M)	1253.538	0.53802156	154	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	0	1	0		By MS/MS	By MS/MS		1	0	2										1	1		30.149	29.824	2	2.6726E-05	26556	160511_QHF_FH_JSI11i_1	96.113	67.027			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21145000	12983000	8162700	0	0	0	21145000	12983000	8162700	0	0	0	0	0	0	8333	154	7888	51661;51662	69769;69770	69769		67	2	
DLMACAQTGSGK	1	Unmodified	1237.5431	0.54310694	154	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS		4	5.2	3					1				1	1	2		30.233	29.628	2	0.00041436	16881	160513_QHF_FH_JSI11Kac_3	93.058	63.971			1.8528	1.7742	33.255	3	0	Median	1.4393	1.1992	NaN	1	0	Median	1.9545	2.3234	NaN	1	0	Median	1.8528	1.7742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162940000	64137000	98800000	77696000	33918000	43778000	45029000	19231000	25798000	40212000	10988000	29224000	0	0	0	8334	154	7888	51663;51664;51665;51666	69771;69772	69771			2	
DLMESEEK	1	Unmodified	979.41683	0.41682702	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		22.207	21.024	2	0.0036491	18117	160511_QHF_FH_JSI11i_1	71.379	39.025			3.9332	3.2036	NaN	1	1	Median	3.9332	3.2036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14375000	1817300	12557000	14375000	1817300	12557000	0	0	0	0	0	0	0	0	0	8335	2547	7889	51667;51668;51669	69773;69774;69775	69773			3	
DLMGFGTK	1	Unmodified	867.41604	0.41603916	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				40.128	38.915	2	0.040862	34282	160511_QHF_FH_JSI9i_1	47.849	6.928			50.398	41.688	NaN	1	1	Median	50.398	41.688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197240000	4114600	193130000	197240000	4114600	193130000	0	0	0	0	0	0	0	0	0	8336	1535	7890	51670	69776	69776			1	
DLMHGLITLMLDSR	0	Unmodified	1613.8269	0.82693336	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.6	102.61	3	0.00038927	89407	160511_QHF_FH_JSI12i_3	57.328	53.555			1.1682	1.158	23.88	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4448	1.371	NaN	1	0	Median	0.94454	0.97809	NaN	1	0	Median	33747000	16906000	16841000	0	0	0	0	0	0	11369000	5755300	5613400	22378000	11150000	11228000	8337	2485	7891	51671;51672	69777	69777			1	
DLMLMSHLQDNIQHADPPVQILYNR	0	Unmodified	2960.4637	0.46368141	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								1	2	1	100.93	100.92	3;4	7.5533E-07	89940	160511_QHF_FH_JSI11i_3	66.556	60.123			0.82874	0.90885	25.104	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89273	1.0908	NaN	1	0	Median	0.9361	0.87989	34.843	2	0	Median	0.76933	0.75723	NaN	1	0	Median	1069500000	592910000	476550000	0	0	0	137160000	59743000	77414000	585390000	306980000	278410000	346910000	226190000	120730000	8338	40	7892	51673;51674;51675;51676	69778;69779;69780	69778			2	
DLMLWMEDVIR	0	Unmodified	1419.689	0.6890429	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.09	102.98	2	4.1217E-05	90779	160511_QHF_FH_JSI11i_2	98.943	73.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8339	2162	7893	51677	69781	69781			1	
DLMPHDLAR	0	Unmodified	1066.523	0.52296385	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	43.486	41.443	2;3	0.00011233	36657	160511_QHF_FH_JSI10i_2	79.986	49.188			0.9731	0.99588	11.586	9	2	Median	1.0585	0.90611	15.664	2	0	Median	0.94191	1.1474	2.3482	2	0	Median	1.034	0.99588	6.7644	3	1	Median	0.84412	0.93907	6.9315	2	1	Median	961900000	490990000	470920000	162950000	67305000	95640000	199350000	100070000	99282000	375150000	197940000	177200000	224460000	125670000	98791000	8340	1848	7894	51678;51679;51680;51681;51682;51683;51684;51685;51686	69782;69783;69784;69785;69786;69787;69788;69789;69790;69791;69792;69793;69794;69795;69796;69797	69795			16	
DLMSKAEK	2	Acetyl (K)	962.47428	0.47428232	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		46.312	37.055	2	0.01481	20681	160513_QHF_FH_JSI11Kac_3	67.897	21.471			0.58882	0.62933	96.278	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0715	1.2432	NaN	1	0	Median	0.32357	0.31858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23003000	16125000	6878000	0	0	0	6874900	3908100	2966900	16128000	12217000	3911100	0	0	0	8341	775	7895	51687;51688	69798;69799;69800;69801	69798	385;392		4	
DLMTDLK	1	Unmodified	834.4157	0.41570481	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.119	50.445	2	0.0037157	44786	160511_QHF_FH_JSI9i_1	102.71	35.72			1.0884	1.0161	13.936	4	0	Median	1.1276	0.91886	NaN	1	0	Median	0.81674	0.93599	NaN	1	0	Median	1.2564	1.2307	NaN	1	0	Median	1.0506	1.1031	NaN	1	0	Median	1307500000	680010000	627470000	277050000	126970000	150070000	321730000	182640000	139080000	391600000	209010000	182580000	317110000	161380000	155730000	8342	891	7896	51689;51690;51691;51692	69802;69803;69804;69805;69806;69807;69808;69809;69810;69811;69812	69811			11	
DLMVGDEASELR	0	Oxidation (M)	1349.6133	0.613295	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	53.131	50.754	2	7.1591E-05	26569	160513_QHF_FH_JSI12Kac_3	102.52	83.253			0.90327	0.99359	21.858	5	2	Median	1.2542	1.0316	NaN	1	0	Median	0.59515	0.70261	NaN	1	1	Median	1.2857	1.2556	NaN	1	0	Median	0.85701	0.9166	11.407	2	1	Median	195460000	93762000	101700000	43507000	16481000	27027000	46066000	26075000	19991000	54374000	24701000	29673000	51514000	26506000	25008000	8343	1940	7897	51693;51694;51695;51696;51697	69813;69814;69815;69816;69817	69817		1605	4	
DLMVGDEASELR	0	Unmodified	1333.6184	0.61838038	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	59.814	59.169	2	1.2243E-22	53698	160511_QHF_FH_JSI11i_1	172.27	143.19			0.84865	0.82158	7.4654	4	0	Median	1.0064	0.82396	NaN	1	0	Median	0.66203	0.78647	NaN	1	0	Median	0.94531	0.93459	NaN	1	0	Median	0.76188	0.8192	NaN	1	0	Median	1819600000	979660000	839890000	450380000	232260000	218110000	568530000	319410000	249130000	412080000	225080000	186990000	388570000	202910000	185660000	8344	1940	7897	51698;51699;51700;51701;51702	69818;69819;69820;69821;69822;69823;69824;69825;69826;69827	69819			10	
DLNAVAFR	0	Unmodified	904.47667	0.47666558	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	5.07	5	3					2			2	2	4	2	53.215	50.02	2	0.0012908	45580	160511_QHF_FH_JSI11i_1	107.59	32.876			0.26922	0.26159	133.55	8	8	Median	0.30407	0.26288	NaN	1	1	Median	0.89831	1.0646	199.19	2	2	Median	0.23391	0.096596	105	4	4	Linear	3.4613	3.5166	NaN	1	1	Median	431070000	248110000	182960000	23834000	17284000	6550100	169190000	88435000	80750000	155670000	114470000	41200000	82378000	27923000	54455000	8345	1060	7898	51703;51704;51705;51706;51707;51708;51709;51710;51711;51712	69828;69829;69830;69831;69832;69833;69834;69835;69836;69837	69828			10	
DLNCVPEIADTLGAVAK	1	Unmodified	1784.8978	0.8978497	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		100.71	100.61	2	0.0001845	91297	160511_QHF_FH_JSI11i_1	86.288	68.479			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12925000	12925000	0	0	0	0	0	0	0	12925000	12925000	0	0	0	0	8346	197	7899	51713	69838	69838			1	
DLNDEKQK	2	Acetyl (K)	1030.4931	0.49310351	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	1	0	0	1			By MS/MS		12	0					1							1		18.782	11.753	2	0.035615	6267	160513_QHF_FH_JSI11Kac_2	60.436	33.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1217400	1217400	0	0	0	0	0	0	0	1217400	1217400	0	0	0	0	8347	2578	7900	51714	69839	69839			1	
DLNEQFK	1	Unmodified	892.42905	0.42904669	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		29.066	28.462	2	0.014686	25251	160511_QHF_FH_JSI10i_1	65.777	32.848			1.5253	1.7776	35.603	3	3	Median	1.2435	0.9932	NaN	1	1	Median	1.5253	1.7776	NaN	1	1	Median	1.9347	1.8954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134610000	52554000	82054000	41357000	16443000	24914000	51208000	18682000	32525000	42043000	17429000	24615000	0	0	0	8348	2453	7901	51715;51716;51717	69840;69841;69842	69841			3	
DLNEQFKK	2	Unmodified	1020.524	0.52400971	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	22.141	20.965	2	0.043546	17330	160511_QHF_FH_JSI12i_2	54.157	35.426			4.3408	4.5644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3408	4.5644	NaN	1	1	Median	13434000	2112400	11322000	0	0	0	0	0	0	0	0	0	13434000	2112400	11322000	8349	2453	7902	51718	69843	69843			1	
DLNEQFKK	2	Acetyl (K)	1062.5346	0.53457439	2453	Q13616	CUL1	Cullin-1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		45.37	36.067	2	0.036219	20236	160513_QHF_FH_JSI11Kac_3	63.48	19.033			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2899000	2899000	0	0	0	0	0	0	0	2899000	2899000	0	0	0	0	8350	2453	7902	51719	69844	69844			1	
DLNETIHYMYK	1	Unmodified	1425.6599	0.65985126	4280	Q99538	LGMN	Legumain	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			33.604	24.152	3	0.055736	14348	160513_QHF_FH_JSI10Kac_4	23.236	8.8041			1.365	1.6326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.365	1.6326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4322900	2117800	2205200	0	0	0	4322900	2117800	2205200	0	0	0	0	0	0	8351	4280	7903	51720	69845	69845			1	
DLNFEVR	0	Unmodified	891.44503	0.4450311	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	50.438	49.814	2	0.0060642	44964	160511_QHF_FH_JSI10i_1	94.114	10.5			0.81132	0.83598	68.698	5	4	Median	3.6458	2.983	NaN	1	1	Median	0.5275	0.61972	NaN	1	1	Median	1.0595	1.0313	69.26	2	2	Median	0.81132	0.83598	NaN	1	0	Median	482020000	236060000	245960000	72800000	25167000	47633000	107940000	64742000	43199000	201920000	95967000	105950000	99362000	50186000	49176000	8352	1304	7904	51721;51722;51723;51724;51725	69846;69847;69848;69849;69850;69851	69850			6	
DLNGIDLTPVQDTPVASR	0	Unmodified	1909.9745	0.97452012	3986	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	79.01	78.432	2	3.9896E-06	71434	160511_QHF_FH_JSI12i_1	105	81.252			1.09	1.0731	51.401	3	3	Median	0.77586	0.61853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.09	1.0731	NaN	1	1	Median	1.6166	1.7276	NaN	1	1	Median	61548000	36293000	25255000	11469000	7530100	3938600	0	0	0	27554000	19048000	8506100	22525000	9714700	12811000	8353	3986	7905	51726;51727;51728	69852;69853;69854	69853			3	
DLNGPGLSR	0	Unmodified	927.47739	0.47739386	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.857	27.584	2	0.035144	24017	160511_QHF_FH_JSI9i_1	47.187	17.614			1.8674	1.5435	NaN	1	1	Median	1.8674	1.5435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22315000	7842000	14473000	22315000	7842000	14473000	0	0	0	0	0	0	0	0	0	8354	2984	7906	51729	69855	69855			1	
DLNHGKYER	1	Acetyl (K)	1172.5574	0.5574351	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		22.175	12.746	3	0.052152	9076	160513_QHF_FH_JSI11Kac_5	32.329	22.897			0.20875	0.20376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20875	0.20376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6148200	5092400	1055800	0	0	0	0	0	0	6148200	5092400	1055800	0	0	0	8355	1304	7907	51730	69856	69856			1	
DLNHVCVISETGK	1	Unmodified	1470.7137	0.71367774	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.201	42.82	2	0.00030777	36676	160511_QHF_FH_JSI12i_2	99.215	86.639			0.33533	0.37119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33533	0.37119	NaN	1	1	Median	20646000	10900000	9746500	0	0	0	0	0	0	0	0	0	20646000	10900000	9746500	8356	772	7908	51731	69857	69857			1	
DLNLGEMK	1	Unmodified	918.44807	0.44806757	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	4.09	8						1			2	2	3	2	48.999	48.319	2	0.00035005	43697	160511_QHF_FH_JSI12i_1	131.06	71.857			1.0593	1.0708	132.92	8	8	Median	1.331	1.0895	171.8	2	2	Median	0.86444	1.0187	185.8	2	2	Median	1.2231	1.2022	193.9	2	2	Median	1.0058	1.0708	147.48	2	2	Median	3398300000	1579400000	1818900000	898940000	343050000	555890000	843320000	486890000	356430000	815090000	343060000	472020000	840980000	406420000	434560000	8357	2846	7909	51732;51733;51734;51735;51736;51737;51738;51739;51740	69858;69859;69860;69861;69862;69863;69864;69865;69866	69860			9	
DLNLGEMK	1	Oxidation (M)	934.44298	0.44298219	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	38.164	29.588	2	0.057121	16755	160513_QHF_FH_JSI12Kac_3	53.968	13.7			1.0713	1.1596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0713	1.1596	NaN	1	0	Median	1808900	737230	1071700	0	0	0	0	0	0	0	0	0	1808900	737230	1071700	8358	2846	7909	51741	69867	69867			0	
DLNMDCIIAEIK	1	Oxidation (M)	1449.6844	0.68435145	44	CON__O43790;CON__Q14533;CON__P78386;O43790;P78386;Q14533	KRT86;KRT85;KRT81	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb5;Keratin, type II cuticular Hb1	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.2	102.09	2	0.0031555	87987	160511_QHF_FH_JSI12i_2	57.598	31.084		+	1.0258	0.91814	15.903	4	0	Linear	0.99014	0.85811	NaN	1	0	Median	0.98604	1.2004	NaN	1	0	Median	1.0627	1.0301	NaN	1	0	Median	1.0843	1.1978	NaN	1	0	Median	528320000	251420000	276900000	186200000	91818000	94385000	62503000	30411000	32092000	151060000	74933000	76123000	128560000	54261000	74296000	8359	44	7910	51742;51743;51744;51745	69868;69869;69870;69871;69872	69868		13	5	
DLNPDVNVFQR	0	Unmodified	1315.6521	0.65206377	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	65.221	64.684	2	1.8445E-05	58752	160511_QHF_FH_JSI11i_1	121.73	87.936			0.87105	0.86299	15.902	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0019	0.9657	NaN	1	0	Median	0.75727	0.77121	NaN	1	0	Median	166830000	90414000	76416000	0	0	0	0	0	0	80008000	41394000	38614000	86823000	49020000	37802000	8360	3926	7911	51746;51747	69873;69874;69875	69873			3	
DLNPFTPLVGIR	0	Unmodified	1340.7452	0.74523587	3319	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	99.568	99.444	2	0.0028001	85700	160511_QHF_FH_JSI12i_2	68.893	38.639			0.99227	1.0768	46.984	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4246	1.5012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69113	0.77244	NaN	1	1	Median	21234000	10170000	11064000	0	0	0	5735200	2120200	3615100	0	0	0	15499000	8049500	7449200	8361	3319	7912	51748;51749	69876;69877	69876			2	
DLNQLFQQDSSSR	0	Unmodified	1536.7168	0.71684887	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	64.744	64.18	2	3.0386E-06	58218	160511_QHF_FH_JSI11i_1	122.18	96.961			2.9494	3.1794	125.79	5	5	Median	1.3305	1.0914	NaN	1	1	Median	1.0353	1.1951	175.63	2	2	Median	9.1747	8.666	NaN	1	1	Median	2.9494	3.1794	NaN	1	1	Median	149430000	58355000	91070000	35886000	18051000	17835000	51774000	28045000	23729000	25005000	2626000	22379000	36761000	9633800	27127000	8362	3395	7913	51750;51751;51752;51753;51754	69878;69879;69880;69881;69882	69878			5	
DLNSDMDSILASLK	1	Unmodified	1520.7392	0.73922379	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	102.11	101.99	2	2.2968E-24	90145	160511_QHF_FH_JSI9i_1	219.42	159.62			2.3361	2.2961	18.983	5	5	Median	3.6915	2.9829	6.1243	2	2	Median	1.7033	1.9958	NaN	1	1	Median	2.3361	2.2961	NaN	1	1	Median	2.0752	2.1532	NaN	1	1	Median	1801900000	519930000	1282000000	526120000	118240000	407880000	391210000	127710000	263510000	395520000	118880000	276640000	489040000	155110000	333930000	8363	1507	7914	51755;51756;51757;51758;51759	69883;69884;69885;69886;69887	69887			5	
DLNSQADSLMTSSAFDTSQVK	1	Unmodified	2244.0216	0.021606243	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	79.004	78.567	2;3	9.5777E-103	71570	160511_QHF_FH_JSI11i_1	223.96	192.43			0.88599	0.93181	28.899	9	3	Median	0.87908	0.71374	1.7051	2	0	Median	0.84662	1.004	42.792	3	2	Median	1.1386	1.1086	24.573	2	1	Median	0.94309	0.96674	12.45	2	0	Median	320010000	145550000	174460000	71400000	33298000	38102000	78423000	36777000	41646000	85305000	36367000	48938000	84881000	39105000	45776000	8364	2470	7915	51760;51761;51762;51763;51764;51765;51766;51767;51768;51769	69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898;69899;69900	69890			12	
DLNSQLEYLR	0	Unmodified	1249.6303	0.63026569	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.717	64.103	2	4.9221E-06	57011	160511_QHF_FH_JSI9i_1	109.29	46.744			0.92726	0.93077	5.9904	4	2	Median	1.1159	0.9162	NaN	1	0	Median	0.84622	0.99054	NaN	1	0	Median	1.0161	0.94559	NaN	1	1	Median	0.79881	0.85879	NaN	1	1	Median	170090000	81174000	88919000	35919000	12853000	23066000	40589000	18222000	22367000	50180000	21763000	28417000	43405000	28336000	15069000	8365	28	7916	51770;51771;51772;51773	69901;69902;69903;69904;69905	69905			5	
DLNSVVIAVK	1	Unmodified	1056.6179	0.61791009	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9	5.66	1					2					2		1	75.191	66.694	2	0.00054262	32601	160513_QHF_FH_JSI10Kac_3	78.334	39.313			0.47441	0.55343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47441	0.55343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2068700	1334800	733890	0	0	0	2068700	1334800	733890	0	0	0	0	0	0	8366	3163	7917	51774;51775;51776	69906;69907;69908	69908			3	
DLNSYLEDK	1	Unmodified	1095.5084	0.50841922	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	7	6	1					1				1			1	59.145	53.948	2	9.7524E-06	47766	160511_QHF_FH_JSI9i_1	128.36	109.27			1.5338	1.4508	47.368	2	1	Median	1.2763	1.0379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8431	2.028	NaN	1	0	Median	297500000	119960000	177540000	292230000	118160000	174070000	0	0	0	0	0	0	5270800	1804600	3466200	8367	323	7918	51777;51778	69909;69910	69909			2	
DLNYCFSGMSDHR	0	Unmodified	1600.6399	0.63986087	1383;1864	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.94	1	8						1		2	2	4	2	53.384	51.376	2;3	6.1286E-22	45438	160511_QHF_FH_JSI10i_2	170.62	154.48			0.96578	0.91127	22.048	9	0	Median	1.0903	0.9083	NaN	1	0	Median	0.70254	0.85824	8.162	2	0	Median	0.93603	0.93041	26.672	4	0	Median	1.0541	1.1564	11.868	2	0	Median	822690000	399270000	423430000	63463000	26133000	37330000	168320000	85384000	82938000	381170000	172830000	208340000	209740000	114920000	94815000	8368	1383;1864	7919	51779;51780;51781;51782;51783;51784;51785;51786;51787;51788	69911;69912;69913;69914;69915;69916;69917;69918;69919;69920;69921;69922;69923;69924	69923			14	
DLPAEDSR	0	Unmodified	901.41412	0.4141249	3327	Q86UN3	RTN4RL2	Reticulon-4 receptor-like 2	yes	yes	0	0	0	0	By MS/MS	By matching			1	0	2									1	1			17.593	16.918	2	0.037328	13992	160511_QHF_FH_JSI9i_1	40.067	10.691			1.1919	1.1276	15.859	2	0	Median	1.2829	1.008	NaN	1	0	Median	1.1074	1.2614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51810000	21128000	30682000	25891000	10335000	15556000	25919000	10793000	15126000	0	0	0	0	0	0	8369	3327	7920	51789;51790	69925	69925			1	
DLPAIQPR	0	Unmodified	908.50797	0.50796571	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.809	44.416	2	0.024604	40174	160511_QHF_FH_JSI11i_1	42.869	27.488			0.34441	0.32105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34441	0.32105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69678000	47294000	22384000	0	0	0	0	0	0	69678000	47294000	22384000	0	0	0	8370	621	7921	51791	69926	69926			1	
DLPDGPDAPADR	0	Unmodified	1237.5575	0.55749468	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	37.408	33.602	2	8.5168E-05	30628	160511_QHF_FH_JSI11i_1	92.538	79.161			0.9436	0.98826	28.444	5	2	Median	NaN	NaN	NaN	0	0	Median	0.57076	0.66172	NaN	1	1	Median	1.0889	1.0564	5.1771	2	0	Median	0.7244	0.75947	37.24	2	1	Median	318220000	183590000	134620000	0	0	0	101590000	64861000	36727000	111800000	55208000	56597000	104820000	63524000	41301000	8371	720	7922	51792;51793;51794;51795;51796	69927;69928;69929;69930;69931;69932	69928			5	
DLPDILNK	1	Unmodified	926.5073	0.50729701	3047	Q6GYQ0	RALGAPA1	Ral GTPase-activating protein subunit alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	67.592	67.073	2	0.019371	61128	160511_QHF_FH_JSI12i_1	57.177	26.992			0.81499	0.80417	98.705	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78731	0.75843	104.3	2	2	Median	1.0091	1.0358	131.82	2	2	Median	41486000	23250000	18237000	0	0	0	0	0	0	23717000	14262000	9454900	17769000	8987800	8781600	8372	3047	7923	51797;51798;51799;51800	69933;69934;69935;69936	69936			4	
DLPDVQELITQVR	0	Unmodified	1524.8148	0.814772	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	101.18	101.1	2	5.7763E-05	91808	160511_QHF_FH_JSI10i_1	108.35	88.013			1.0355	1.078	27.106	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3803	1.6375	NaN	1	0	Median	1.0048	0.98534	NaN	1	1	Median	1.0355	1.078	NaN	1	1	Median	634040000	302570000	331470000	0	0	0	298650000	125830000	172820000	186390000	102520000	83863000	149000000	74221000	74780000	8373	5295	7924	51801;51802;51803	69937;69938;69939	69939			3	
DLPEGAVK	1	Unmodified	827.43888	0.43888309	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	28.592	28.099	2	0.0033065	25030	160511_QHF_FH_JSI10i_1	79.469	46.998			0.56053	0.46325	83.067	7	5	Median	0.56053	0.46325	NaN	1	1	Median	0.49541	0.58708	78.606	2	1	Median	0.9934	0.96429	155.15	2	2	Median	0.65736	0.67497	82.484	2	1	Median	985670000	528420000	457240000	153270000	83320000	69951000	242610000	154960000	87653000	295470000	143690000	151780000	294310000	146450000	147860000	8374	3860	7925	51804;51805;51806;51807;51808;51809;51810;51811	69940;69941;69942;69943;69944;69945;69946	69944			7	
DLPEHAVLK	1	Unmodified	1020.5604	0.56039521	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.8	9	9	8				5	6		8	8	12	9	39.17	35.604	2;3	2.9595E-07	32540	160511_QHF_FH_JSI12i_1	120.12	86.322			0.88879	0.95393	69.938	37	11	Median	1.97	1.5981	120.28	8	4	Median	0.77305	0.91649	12.034	8	0	Median	1.0058	0.99448	59.258	12	6	Median	0.79252	0.88106	30.92	9	1	Median	12642000000	5850300000	6791400000	2751400000	842280000	1909100000	2675400000	1446700000	1228700000	4451700000	2087200000	2364600000	2763000000	1474100000	1289000000	8375	2161	7926	51812;51813;51814;51815;51816;51817;51818;51819;51820;51821;51822;51823;51824;51825;51826;51827;51828;51829;51830;51831;51832;51833;51834;51835;51836;51837;51838;51839;51840;51841;51842;51843;51844;51845;51846;51847;51848	69947;69948;69949;69950;69951;69952;69953;69954;69955;69956;69957;69958;69959;69960;69961;69962;69963;69964;69965;69966;69967;69968;69969;69970;69971;69972;69973;69974;69975;69976;69977;69978;69979;69980;69981;69982;69983;69984;69985;69986;69987;69988;69989;69990;69991;69992;69993;69994;69995;69996;69997;69998;69999;70000;70001;70002;70003;70004;70005;70006;70007;70008	69966			62	
DLPEHAVLKMK	2	Acetyl (K)	1321.7064	0.70640752	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.497							4	5			2	3	4	65.897	55.102	2;3	0.00036281	27805	160513_QHF_FH_JSI12Kac_5	77.64	67.985			0.40423	0.42782	125.11	9	2	Median	NaN	NaN	NaN	0	0	Median	0.22385	0.26249	211.27	2	1	Median	0.44056	0.43844	145.74	3	1	Plateau	0.54382	0.58517	60.966	4	0	Median	78156000	49972000	28184000	0	0	0	18730000	12552000	6177600	33202000	23316000	9885400	26224000	14104000	12121000	8376	2161	7927	51849;51850;51851;51852;51853;51854;51855;51856;51857	70009;70010;70011;70012;70013	70013	2271		5	
DLPEHAVLKMK	2	Acetyl (K);Oxidation (M)	1337.7013	0.70132214	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	52.526	41.948	3	0.00013077	23976	160513_QHF_FH_JSI12Kac_4	88.441	66.81			0.62463	0.62073	225.26	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62463	0.62073	NaN	1	0	Median	5.2786	5.7458	261.66	2	1	Median	26499000	15338000	11161000	0	0	0	0	0	0	16137000	11577000	4560000	10362000	3760400	6601300	8377	2161	7927	51858;51859;51860;51861	70014;70015;70016;70017;70018	70014	2271	1807	5	
DLPELALDTPR	0	Unmodified	1238.6507	0.65066678	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	1	4	77.701	73.019	2	2.2759E-09	68150	160511_QHF_FH_JSI11i_1	130.41	104.85			0.94401	0.95888	58.938	8	3	Median	1.1675	0.96694	NaN	1	0	Median	0.40206	0.47133	94.641	2	1	Median	1.0079	0.9773	NaN	1	0	Median	1.0347	1.1156	46.276	4	2	Median	1852000000	939970000	912030000	507180000	241890000	265290000	471130000	280350000	190780000	479590000	230470000	249110000	394090000	187250000	206840000	8378	2846	7928	51862;51863;51864;51865;51866;51867;51868;51869	70019;70020;70021;70022;70023;70024;70025;70026;70027;70028;70029;70030;70031;70032;70033;70034	70020			16	
DLPESALR	0	Unmodified	899.47125	0.47124585	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	1	3	41.553	38.981	2	0.0025445	35166	160511_QHF_FH_JSI11i_1	87.323	17.933			0.74296	0.7737	39.883	4	3	Median	NaN	NaN	NaN	0	0	Median	0.51635	0.60679	NaN	1	1	Median	0.60224	0.58822	NaN	1	1	Median	1.0774	1.1505	21.745	2	1	Median	1220900000	543430000	677500000	0	0	0	395620000	183110000	212510000	388200000	184860000	203350000	437100000	175460000	261640000	8379	1381	7929	51870;51871;51872;51873;51874	70035;70036;70037;70038;70039	70035			5	
DLPFETLEVEAK	1	Unmodified	1389.7028	0.70276193	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.525	86.073	2	3.5592E-05	78297	160511_QHF_FH_JSI12i_1	104.79	72.861			0.83965	0.95037	5.7434	4	1	Linear	1.0546	0.86034	NaN	1	1	Median	0.80167	0.97902	NaN	1	0	Median	1.0075	0.96262	NaN	1	0	Median	0.883	0.93828	NaN	1	0	Median	177170000	89887000	87279000	21592000	10512000	11081000	65917000	37784000	28133000	40033000	19640000	20393000	49624000	21951000	27673000	8380	5128	7930	51875;51876;51877;51878	70040;70041;70042;70043;70044;70045;70046;70047;70048	70043			9	
DLPFIVSHR	0	Unmodified	1082.5873	0.58727866	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	62.307	61.71	2;3	5.2694E-05	54678	160511_QHF_FH_JSI11i_3	99.013	81.193			1.5899	1.5548	43.141	6	4	Median	NaN	NaN	NaN	0	0	Median	1.5278	1.7839	57.924	2	1	Median	1.4208	1.3295	58.856	2	1	Median	1.5899	1.5923	40.089	2	2	Median	468630000	226950000	241680000	0	0	0	115770000	50344000	65429000	210460000	106700000	103750000	142400000	69903000	72494000	8381	1316	7931	51879;51880;51881;51882;51883;51884	70049;70050;70051;70052;70053	70050			5	
DLPGAGPLR	0	Unmodified	894.49232	0.49231565	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.387	43.994	2	0.01252	39744	160511_QHF_FH_JSI11i_1	57.281	22.175			1.1499	1.1193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1499	1.1193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34647000	15909000	18738000	0	0	0	0	0	0	34647000	15909000	18738000	0	0	0	8382	4880	7932	51885	70054	70054			1	
DLPGALDEK	1	Unmodified	956.48148	0.48147619	3987	Q96BM9	ARL8A	ADP-ribosylation factor-like protein 8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.18	43.514	2	0.00015459	39563	160511_QHF_FH_JSI12i_1	88.948	20.526			0.19886	0.24552	88.437	4	3	Linear	2.8506	2.3641	NaN	1	1	Median	0.43468	0.53017	NaN	1	1	Median	1.6224	1.5283	NaN	1	1	Median	0.34907	0.35727	NaN	1	0	Median	263420000	148420000	114990000	56882000	19690000	37193000	66135000	43054000	23081000	71702000	33988000	37714000	68696000	51691000	17005000	8383	3987	7933	51886;51887;51888;51889	70055;70056;70057;70058	70056			4	
DLPHFVR	0	Unmodified	882.47119	0.47118627	3917	Q92989	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	43.92	43.763	3	0.010994	38465	160511_QHF_FH_JSI11i_3	40.103	31.331			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8384	3917	7934	51890;51891;51892	70059;70060;70061	70059			3	
DLPLAQGIK	1	Unmodified	953.55458	0.55458155	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	58.495	57.846	2	0.00015238	52332	160511_QHF_FH_JSI10i_1	89.142	54.335			1.0688	1.082	8.0428	4	0	Median	1.1531	0.93747	NaN	1	0	Median	0.95369	1.1251	NaN	1	0	Median	1.1246	1.0766	NaN	1	0	Median	1.0158	1.0873	NaN	1	0	Median	1128200000	565820000	562360000	296400000	144240000	152160000	257060000	143760000	113300000	310530000	155910000	154620000	264190000	121910000	142280000	8385	1659	7935	51893;51894;51895;51896;51897	70062;70063;70064;70065;70066;70067;70068;70069;70070;70071;70072;70073;70074;70075	70072			14	
DLPLLLFR	0	Unmodified	985.59605	0.59605244	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.89	3	4	4					1	8	4	6	5	5	98.341	94.23	2	8.9929E-31	87555	160511_QHF_FH_JSI12i_2	209.69	176.33			1.1795	1.1689	76.332	19	9	Median	1.3235	1.0855	85.233	4	2	Median	0.74165	0.88691	61.266	5	3	Median	1.188	1.2126	70.872	5	2	Median	1.2761	1.353	104.29	5	2	Median	17041000000	8687000000	8354000000	2888800000	1296200000	1592700000	4139800000	2280200000	1859600000	5329200000	2480700000	2848600000	4683000000	2629900000	2053100000	8386	309	7936	51898;51899;51900;51901;51902;51903;51904;51905;51906;51907;51908;51909;51910;51911;51912;51913;51914;51915;51916;51917	70076;70077;70078;70079;70080;70081;70082;70083;70084;70085;70086;70087;70088;70089;70090;70091;70092;70093;70094;70095;70096;70097;70098;70099;70100;70101	70078			26	
DLPLSIWLLLK	1	Unmodified	1309.801	0.80095983	3983	Q96BD0	SLCO4A1	Solute carrier organic anion transporter family member 4A1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.2	94.484	2	1.6532E-10	55627	160513_QHF_FH_JSI10Kac_6	127.3	107.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26493000	0	26493000	0	0	0	26493000	0	26493000	0	0	0	0	0	0	8387	3983	7937	51918	70102	70102			1	
DLPLSPDTTVVLHQVYNVLLGLLSR	0	Unmodified	2761.5378	0.53781586	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.15	99.431	3	6.5641E-09	58878	160513_QHF_FH_JSI10Kac_6	123.65	105.65			1.0672	1.2249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0672	1.2249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111170000	51587000	59582000	0	0	0	111170000	51587000	59582000	0	0	0	0	0	0	8388	3198	7938	51919	70103	70103			1	
DLPNALDEK	1	Unmodified	1013.5029	0.50293991	5036	Q9NVJ2	ARL8B	ADP-ribosylation factor-like protein 8B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.596	43.927	2	0.0016682	39692	160511_QHF_FH_JSI11i_1	76.827	59.441			2.505	2.7573	25.037	4	4	Median	4.5235	3.7702	NaN	1	1	Median	2.5464	2.9943	NaN	1	1	Median	2.1248	2.0896	NaN	1	1	Median	2.4643	2.539	NaN	1	1	Median	439610000	166150000	273470000	97467000	43421000	54047000	113920000	47156000	66765000	116960000	44580000	72380000	111260000	30990000	80274000	8389	5036	7939	51920;51921;51922;51923	70104;70105;70106;70107	70104			4	
DLPPILLVR	0	Unmodified	1034.6488	0.64881629	1840	P55011	SLC12A2	Solute carrier family 12 member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			94.956	94.695	2	0.01075	84040	160511_QHF_FH_JSI10i_2	57.281	27.096			0.76508	0.78229	11.535	2	2	Median	0.83804	0.72101	NaN	1	1	Median	0.69848	0.84877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15038000	8502000	6536500	6801200	3480800	3320400	8237300	5021200	3216100	0	0	0	0	0	0	8390	1840	7940	51924;51925	70108;70109	70109			2	
DLPPLLLK	1	Unmodified	907.57425	0.57425436	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	3	3	4	84.311	83.688	2	0.003714	76474	160511_QHF_FH_JSI11i_1	70.912	61.163			1.0294	0.98753	51.863	12	9	Median	1.408	1.1983	59.437	2	1	Median	1.1096	1.3095	54.381	3	3	Median	0.74118	0.70098	55.783	3	2	Median	0.884	0.94637	64.329	4	3	Median	370990000	195220000	175780000	63688000	34346000	29341000	81930000	43408000	38522000	103310000	52156000	51155000	122060000	65305000	56759000	8391	4623	7941	51926;51927;51928;51929;51930;51931;51932;51933;51934;51935;51936;51937;51938	70110;70111;70112;70113;70114;70115;70116;70117;70118;70119;70120;70121;70122;70123;70124;70125;70126;70127;70128;70129;70130;70131	70113			22	
DLPPVSGSIIWAK	1	Unmodified	1381.7606	0.76055158	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.303	88.868	2	0.00012256	80837	160511_QHF_FH_JSI10i_1	87.568	58.406			0.84421	0.81938	5.6083	4	0	Median	0.95216	0.81462	NaN	1	0	Median	0.70957	0.82416	NaN	1	0	Median	0.93507	0.89414	NaN	1	0	Median	0.76218	0.78216	NaN	1	0	Median	225150000	122220000	102920000	36923000	18734000	18189000	71676000	39359000	32317000	62049000	31850000	30199000	54501000	32281000	22220000	8392	2517	7942	51939;51940;51941;51942	70132;70133;70134;70135;70136;70137;70138;70139;70140;70141;70142;70143;70144	70139			13	
DLPSADSVQYR	0	Unmodified	1249.5939	0.59388018	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	47.146	44.7	2	0.00015992	40707	160511_QHF_FH_JSI12i_1	83	42.013			0.83539	0.78917	18.263	5	2	Median	0.83539	0.68627	NaN	1	1	Median	0.8385	0.99621	NaN	1	0	Median	0.92691	0.88902	16.849	2	1	Median	0.67148	0.70569	NaN	1	0	Median	577130000	331180000	245950000	108900000	58934000	49968000	175590000	85833000	89755000	154170000	96086000	58084000	138470000	90327000	48142000	8393	3862	7943	51943;51944;51945;51946;51947;51948;51949	70145;70146;70147;70148;70149;70150;70151;70152	70146			8	
DLPSWMK	1	Unmodified	875.42112	0.42112454	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	65.6	64.814	2	0.0048398	55662	160511_QHF_FH_JSI12i_2	97.071	61.966			1.4292	1.5098	28.807	9	5	Median	1.3283	1.1065	39.204	3	2	Median	1.2658	1.5025	20.903	2	1	Median	1.8984	1.9086	13.093	2	1	Median	1.1976	1.2945	21.755	2	1	Median	1493000000	631170000	861820000	334040000	127350000	206680000	324630000	162820000	161810000	420500000	181390000	239110000	413830000	159620000	254210000	8394	2094	7944	51950;51951;51952;51953;51954;51955;51956;51957;51958	70153;70154;70155;70156;70157;70158;70159;70160;70161;70162;70163;70164;70165;70166;70167;70168;70169;70170;70171;70172;70173;70174;70175	70160			23	
DLPSWMKFLHGK	2	Acetyl (K)	1499.7595	0.75950572	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		90.173	80.824	2;3	2.1033E-07	45259	160513_QHF_FH_JSI11Kac_6	138.36	103.14			0.4391	0.43019	55.6	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4391	0.43019	55.6	2	1	Median	NaN	NaN	NaN	0	0	Median	120350000	90618000	29727000	0	0	0	0	0	0	120350000	90618000	29727000	0	0	0	8395	2094	7945	51959;51960	70176;70177	70176	2183		1	
DLPTIPGVTSPSSDEPPMEASQSHLR	0	Unmodified	2747.3072	0.30722358	2435	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3									1	3	3	81.158	80.544	3	2.922E-12	73406	160511_QHF_FH_JSI11i_1	79.762	72.402			0.75611	0.85135	26.836	7	5	Median	NaN	NaN	NaN	0	0	Median	0.75611	0.86252	NaN	1	0	Median	0.89213	0.85135	22.005	3	3	Median	0.65049	0.71115	36.417	3	2	Median	212010000	114750000	97261000	0	0	0	35399000	19290000	16109000	88496000	44631000	43864000	88120000	50832000	37288000	8396	2435	7946	51961;51962;51963;51964;51965;51966;51967	70178;70179;70180;70181;70182;70183;70184;70185;70186	70180			9	
DLPVGLEELR	0	Unmodified	1139.6186	0.61863837	1515	P41229;Q9BY66	KDM5C;KDM5D	Lysine-specific demethylase 5C;Lysine-specific demethylase 5D	yes	no	0	0	0	0				By MS/MS	1	0	2												2	77.913	77.376	2	0.013672	70514	160511_QHF_FH_JSI12i_1	51.445	27.29			1.1395	1.1665	54.351	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1395	1.1665	54.351	2	2	Median	53360000	24699000	28662000	0	0	0	0	0	0	0	0	0	53360000	24699000	28662000	8397	1515	7947	51968;51969	70187;70188	70188			2	
DLPVSEQQER	0	Unmodified	1199.5782	0.57823012	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	33.22	26.935	2	0.00023605	24616	160511_QHF_FH_JSI12i_1	91.265	70.566			1.0752	1.2685	75.252	3	2	Median	3.373	2.8059	NaN	1	1	Median	1.0752	1.2685	NaN	1	0	Median	0.63081	0.62343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	369490000	88993000	280500000	357560000	82750000	274810000	3704700	2069200	1635500	8225800	4173600	4052200	0	0	0	8398	5441	7948	51970;51971;51972;51973;51974;51975	70189;70190;70191;70192;70193;70194	70190			6	
DLPVTEAVFSALVTGHAR	0	Unmodified	1881.9949	0.99486163	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.69		5	8						4	5	5	3	4	99.55	96.911	2;3	1.3046E-144	88421	160511_QHF_FH_JSI12i_3	300.22	275.93			1.0141	1.0395	31.652	13	5	Median	1.3185	1.0823	15.074	4	2	Median	0.87934	1.0853	45.619	4	2	Median	1.097	1.0342	39.838	3	1	Plateau	0.93519	0.99081	9.6354	2	0	Median	8219200000	4239600000	3979600000	1064800000	450270000	614570000	1407000000	738980000	668050000	3023300000	1476400000	1546900000	2724100000	1574000000	1150100000	8399	1544	7949	51976;51977;51978;51979;51980;51981;51982;51983;51984;51985;51986;51987;51988;51989;51990;51991;51992	70195;70196;70197;70198;70199;70200;70201;70202;70203;70204;70205;70206;70207;70208;70209;70210;70211;70212;70213;70214;70215;70216	70213			22	
DLQAEALCK	1	Unmodified	1046.5066	0.50664508	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	45.232	36.163	2	0.011144	19982	160513_QHF_FH_JSI12Kac_3	68.224	30.665			1.1072	1.1384	59.046	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77984	0.74981	NaN	1	1	Median	1.572	1.7282	NaN	1	1	Median	3729700	1945800	1783900	0	0	0	0	0	0	1748100	987490	760610	1981600	958310	1023300	8400	4326	7950	51993;51994	70217;70218	70218			2	
DLQANVEHLVQK	1	Unmodified	1392.7361	0.73612775	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5									2	3	3	60.235	59.471	2;3	1.4665E-05	54111	160511_QHF_FH_JSI11i_1	96.745	70.627			0.63157	0.70373	33.567	7	5	Median	NaN	NaN	NaN	0	0	Median	0.59709	0.72125	3.4781	2	2	Median	0.84553	0.79448	13.897	3	2	Median	0.38958	0.43427	40.071	2	1	Median	1302300000	799690000	502570000	0	0	0	221060000	121170000	99896000	594470000	331350000	263120000	486720000	347170000	139550000	8401	897	7951	51995;51996;51997;51998;51999;52000;52001;52002	70219;70220;70221;70222;70223;70224;70225;70226	70219			8	
DLQDELAGNSEQR	0	Unmodified	1473.6696	0.66956432	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.476	39.044	2	0.00048916	35024	160511_QHF_FH_JSI10i_1	90.697	63.808			0.71422	0.7984	17.406	3	3	Median	NaN	NaN	NaN	0	0	Median	0.71422	0.7984	NaN	1	1	Median	0.67951	0.64751	NaN	1	1	Median	0.8635	0.91476	NaN	1	1	Median	63367000	39282000	24084000	0	0	0	18495000	11321000	7174200	22865000	14375000	8490000	22006000	13586000	8420000	8402	5479	7952	52003;52004;52005	70227;70228;70229	70229			3	
DLQDELAGNSEQRK	1	Unmodified	1601.7645	0.76452734	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1.3	0.458	7	3								3	3	1	3	32.354	31.592	2;3	0.00012038	28151	160511_QHF_FH_JSI10i_1	70.98	59.064			1.0497	1.0855	38.518	9	3	Median	2.6655	2.1787	18.547	2	1	Median	0.90059	1.0665	2.1881	3	1	Median	1.1005	1.0829	NaN	1	0	Median	1.288	1.3348	36.843	3	1	Plateau	635350000	329720000	305640000	109330000	55674000	53652000	224530000	131610000	92923000	115520000	54569000	60956000	185970000	87868000	98104000	8403	5479	7953	52006;52007;52008;52009;52010;52011;52012;52013;52014;52015	70230;70231;70232;70233;70234;70235;70236;70237;70238;70239	70233			10	
DLQEEVSNLYNNIR	0	Unmodified	1705.8271	0.8271276	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	91.23	90.829	2	1.8029E-31	82652	160511_QHF_FH_JSI12i_1	167.18	107.08			1.1727	1.1465	35.507	2	1	Median	1.7508	1.4737	NaN	1	1	Median	0.78547	0.89193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59981000	39218000	20763000	8839100	2373700	6465400	34714000	20417000	14297000	16427000	16427000	0	0	0	0	8404	615	7954	52016;52017;52018;52019	70240;70241;70242;70243;70244	70241			5	
DLQEFIPLINQITAK	1	Unmodified	1741.9614	0.96143623	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.287	1	10								3	4	2	2	102.64	102.55	2;3	1.6371E-16	91145	160511_QHF_FH_JSI10i_2	120.84	96.584			0.88741	0.93688	30.471	9	1	Median	1.2089	1.0421	62.402	2	1	Median	0.77798	0.93688	40.551	3	0	Median	0.99426	0.98941	8.9484	2	0	Median	0.84437	0.94326	7.7821	2	0	Median	552760000	291960000	260800000	91390000	44157000	47233000	165350000	94435000	70914000	116010000	58416000	57596000	180010000	94948000	85061000	8405	344	7955	52020;52021;52022;52023;52024;52025;52026;52027;52028;52029;52030	70245;70246;70247;70248;70249;70250;70251;70252;70253;70254;70255;70256;70257;70258	70258			14	
DLQEFVPFGR	0	Unmodified	1206.6033	0.60332266	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			87.947	87.405	2	0.0042173	77502	160511_QHF_FH_JSI10i_2	66.692	25.663			1.063	1.289	195.75	2	2	Median	NaN	NaN	NaN	0	0	Median	1.063	1.289	195.75	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18711000	12258000	6452600	0	0	0	18711000	12258000	6452600	0	0	0	0	0	0	8406	4653	7956	52031;52032	70259;70260;70261	70259			3	
DLQELGDSDK	1	Unmodified	1118.5091	0.5091475	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.71	4.2	6					1				2	2	3		34.719	32.891	2	8.6371E-07	29328	160511_QHF_FH_JSI10i_1	123.86	83.757			1.0826	1.2862	194.01	7	7	Median	2.8327	2.3333	213.06	2	2	Median	3.0933	3.6323	146.82	2	2	Median	2.3161	2.2502	228.98	3	3	Plateau	NaN	NaN	NaN	0	0	Median	720710000	245780000	474930000	203330000	79854000	123480000	246870000	77236000	169630000	270510000	88690000	181820000	0	0	0	8407	1388	7957	52033;52034;52035;52036;52037;52038;52039	70262;70263;70264;70265;70266;70267;70268	70265			7	
DLQEQDADAGSER	0	Unmodified	1432.6066	0.60662972	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	16.505	16.047	2	2.5209E-12	13714	160511_QHF_FH_JSI10i_1	121.08	90.512			0.51473	0.53581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51473	0.53581	NaN	1	1	Median	19877000	12718000	7159400	0	0	0	0	0	0	0	0	0	19877000	12718000	7159400	8408	3087	7958	52040;52041	70269;70270	70270			2	
DLQEVIELTK	1	Unmodified	1186.6445	0.64451877	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	82.991	82.525	2	6.7867E-07	74929	160511_QHF_FH_JSI11i_1	121.83	100.96			1.6115	1.6774	239.98	8	8	Median	1.0029	0.82813	358.69	2	2	Median	1.7052	1.9245	263.96	2	2	Median	1.1305	1.0761	307.31	2	2	Median	1.2383	1.2609	320.74	2	2	Median	214370000	109780000	104590000	41490000	23439000	18051000	61271000	32464000	28808000	60280000	25647000	34633000	51330000	28230000	23101000	8409	588	7959	52042;52043;52044;52045;52046;52047;52048;52049	70271;70272;70273;70274;70275;70276;70277;70278	70271			8	
DLQEVKAAAR	1	Acetyl (K)	1141.6091	0.60913632	5616	Q9Y490	TLN1	Talin-1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		57.436	47.837	2	0.0006449	25540	160513_QHF_FH_JSI11Kac_3	90.906	45.226			0.13018	0.12598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13018	0.12598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3565100	3422000	143050	0	0	0	0	0	0	3565100	3422000	143050	0	0	0	8410	5616	7960	52050	70279	70279	3498		1	
DLQGRDEQSEEK	1	Unmodified	1432.643	0.64301522	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									4	4	3	3	8.9403	8.56	2;3	6.5076E-06	6321	160511_QHF_FH_JSI10i_1	130.56	95.796			0.44574	0.38228	96.431	14	14	Median	0.86407	0.70591	80.82	4	4	Median	0.63018	0.75006	122.22	4	4	Median	0.79267	0.76708	80.798	3	3	Plateau	0.25461	0.26656	140.85	3	3	Median	7597500000	4210500000	3387000000	2226600000	1147000000	1079600000	2406500000	1421500000	984980000	1438300000	791840000	646480000	1526000000	850060000	675990000	8411	1436	7961	52051;52052;52053;52054;52055;52056;52057;52058;52059;52060;52061;52062;52063;52064	70280;70281;70282;70283;70284;70285;70286;70287;70288;70289;70290;70291;70292;70293	70287			14	
DLQHPNEFIR	0	Unmodified	1267.6309	0.63093439	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	2	8						2		2	3	4	3	46.296	43.676	2;3	1.5455E-05	38504	160511_QHF_FH_JSI10i_2	90.05	61.092			1.0842	1.0128	26.691	11	4	Median	1.199	1.0061	NaN	1	0	Median	0.82163	1.0128	37.715	3	1	Median	1.2917	1.305	27.343	4	2	Median	0.85692	0.92436	19.718	3	1	Plateau	1710000000	889840000	820200000	233320000	108560000	124760000	405160000	215140000	190020000	726610000	379690000	346920000	344950000	186450000	158500000	8412	1804	7962	52065;52066;52067;52068;52069;52070;52071;52072;52073;52074;52075;52076	70294;70295;70296;70297;70298;70299;70300;70301;70302;70303;70304;70305;70306	70306			13	
DLQLLQGSK	1	Unmodified	1000.5553	0.55530983	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.626	51.957	2	2.1238E-05	47044	160511_QHF_FH_JSI10i_1	106.42	47.073			0.13399	0.14051	26.297	4	1	Median	0.12099	0.098149	NaN	1	1	Median	0.10565	0.12493	NaN	1	0	Median	0.18288	0.17764	NaN	1	0	Median	0.1484	0.15803	NaN	1	0	Median	2812400000	2462600000	349830000	394170000	344660000	49509000	903400000	807600000	95806000	862230000	723530000	138700000	652610000	586790000	65816000	8413	5034	7963	52077;52078;52079;52080	70307;70308;70309;70310	70309			4	
DLQMFLYHLR	0	Unmodified	1334.6805	0.68052712	5704	Q9Y666	SLC12A7	Solute carrier family 12 member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.117	77.856	3	1.2086E-05	44470	160513_QHF_FH_JSI10Kac_6	82.417	53.346			0.42647	0.43263	3.1261	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45353	0.4423	NaN	1	1	Median	0.40102	0.42318	NaN	1	1	Median	53884000	39764000	14120000	10011000	0	10011000	25365000	25365000	0	11199000	8850200	2348600	7309300	5549100	1760200	8414	5704	7964	52081;52082;52083;52084	70311;70312;70313;70314	70314			4	
DLQMVNISLR	0	Unmodified	1187.6332	0.63324258	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5									3	2	2	76.715	76.03	2	6.6982E-07	66621	160511_QHF_FH_JSI11i_2	121.73	58.168			2.2157	2.4257	131.8	7	7	Median	NaN	NaN	NaN	0	0	Median	2.6773	3.2888	117.05	3	3	Median	0.84682	0.86231	207.96	2	2	Median	0.722	0.80317	156.31	2	2	Median	1639000000	871230000	767730000	0	0	0	668170000	340440000	327730000	483520000	232420000	251100000	487270000	298370000	188900000	8415	4296	7965	52085;52086;52087;52088;52089;52090;52091	70315;70316;70317;70318;70319;70320;70321;70322	70320			8	
DLQMVNISLR	0	Oxidation (M)	1203.6282	0.6281572	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.836						4	3	10		3	7	3	4	71.131	60.816	2	5.73E-06	33104	160513_QHF_FH_JSI11Kac_4	111.06	70.705			0.92772	0.99975	59.58	16	9	Median	1.5424	1.3061	30.504	3	0	Median	0.8985	1.0945	54.469	7	4	Median	0.47546	0.47095	51.764	3	2	Median	0.56342	0.61139	101.78	3	3	Median	102560000	50868000	51689000	17413000	7821400	9591100	52546000	26271000	26276000	20186000	10322000	9864000	12412000	6453300	5958400	8416	4296	7965	52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108	70323;70324;70325;70326;70327;70328;70329;70330;70331;70332;70333;70334;70335;70336;70337;70338;70339;70340	70327		2432	17	
DLQNFLR	0	Unmodified	904.47667	0.47666558	2549;2547	Q14573;Q14643	ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	63.397	62.715	2	0.0051766	55649	160511_QHF_FH_JSI10i_2	103.29	38.51			0.29473	0.36085	144.04	5	5	Median	3.9053	3.4619	NaN	1	1	Median	0.29473	0.36085	NaN	1	1	Median	0.89639	0.87665	196.19	2	2	Median	0.21975	0.21775	NaN	1	1	Median	151720000	78605000	73118000	36634000	7190800	29443000	31798000	22198000	9599400	70120000	38571000	31549000	13171000	10644000	2527000	8417	2547;2549	7966	52109;52110;52111;52112;52113	70341;70342;70343;70344;70345	70345			5	
DLQNVNITLR	0	Unmodified	1184.6513	0.65133548	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.92	7		1			1	3			2	4	3	3	63.999	59.999	2	3.4404E-14	54471	160511_QHF_FH_JSI10i_1	182.65	119.08			0.59277	0.66826	93.12	11	9	Median	1.1889	0.96715	142.99	2	2	Median	0.80147	0.95964	58.174	3	2	Plateau	0.59277	0.58112	100.5	3	3	Median	2.3099	2.4819	109.28	3	2	Median	3354300000	1661800000	1692500000	579280000	274420000	304860000	735990000	405980000	330010000	1027300000	506760000	520500000	1011700000	474640000	537100000	8418	1424	7967	52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124;52125	70346;70347;70348;70349;70350;70351;70352;70353;70354;70355;70356;70357;70358	70353			13	
DLQPYMPIPHVR	0	Unmodified	1464.7548	0.7547547	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	70.617	69.789	3	0.00087965	61029	160511_QHF_FH_JSI11i_2	51.841	41.56			0.58	0.66122	42.916	4	4	Median	NaN	NaN	NaN	0	0	Median	0.5437	0.67511	NaN	1	1	Median	0.82946	0.84542	70.091	2	2	Median	0.61873	0.64762	NaN	1	1	Median	87708000	45774000	41934000	0	0	0	24066000	14211000	9855500	46695000	21491000	25205000	16946000	10072000	6874000	8419	5538	7968	52126;52127;52128;52129	70359;70360;70361;70362;70363	70360			5	
DLQQQLVDAK	1	Unmodified	1156.6088	0.60880197	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	44.488	43.908	2	6.307E-14	39040	160511_QHF_FH_JSI9i_1	173.32	128.24			1.1981	1.142	74.734	6	5	Median	0.93818	0.77498	NaN	1	0	Median	0.73797	0.87369	101.91	2	2	Median	0.77288	0.75972	112.48	2	2	Median	1.6309	1.7059	NaN	1	1	Median	1030500000	579970000	450520000	154040000	85597000	68446000	343210000	196760000	146450000	369830000	224810000	145020000	163410000	72807000	90602000	8420	1493	7969	52130;52131;52132;52133;52134;52135	70364;70365;70366;70367;70368;70369;70370	70370			7	
DLQQSIAR	0	Unmodified	929.49304	0.49304393	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	24.75	24.062	2	0.0012367	21064	160511_QHF_FH_JSI10i_1	109.01	39.014			2.0407	2.0851	51.949	3	2	Median	2.5455	2.1269	NaN	1	1	Median	0.71466	0.85653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0407	2.0851	NaN	1	0	Median	306000000	150660000	155340000	96236000	34243000	61993000	128220000	83676000	44547000	0	0	0	81540000	32737000	48803000	8421	3766	7970	52136;52137;52138;52139	70371;70372;70373;70374	70372			4	
DLQQYQSQAK	1	Unmodified	1207.5833	0.5833155	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	5.65	3		1		1	4				1	2	3	3	28.294	23.249	2	6.4287E-19	21098	160511_QHF_FH_JSI12i_1	211.02	145.98			1.1888	1.2358	133.39	7	7	Median	NaN	NaN	NaN	0	0	Median	4.0937	4.8207	NaN	1	1	Median	0.6905	0.66719	128.68	3	3	Median	0.44607	0.46923	157.93	3	3	Plateau	1398200000	902540000	495630000	0	0	0	3568100	771960	2796200	572770000	328640000	244120000	821840000	573130000	248710000	8422	520	7971	52140;52141;52142;52143;52144;52145;52146;52147;52148	70375;70376;70377;70378;70379;70380;70381;70382;70383;70384	70378			10	
DLQSNVEHLTEK	1	Unmodified	1411.6943	0.69432251	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	7	8								3	4	4	4	49.713	48.897	2;3	1.1533E-22	42122	160511_QHF_FH_JSI11i_2	172.92	132.92			0.77953	0.77271	34.706	14	3	Median	0.87171	0.73473	66.267	3	0	Plateau	0.97377	0.94358	35.106	4	1	Linear	0.75263	0.763	8.6741	4	1	Linear	0.70237	0.75934	5.5427	3	1	Plateau	957660000	526630000	431020000	198460000	90784000	107680000	224740000	126960000	97783000	351390000	204060000	147330000	183060000	104840000	78226000	8423	2176	7972	52149;52150;52151;52152;52153;52154;52155;52156;52157;52158;52159;52160;52161;52162;52163	70385;70386;70387;70388;70389;70390;70391;70392;70393;70394;70395;70396;70397;70398;70399;70400;70401;70402;70403;70404;70405;70406;70407;70408;70409	70402			25	
DLQSSDR	0	Unmodified	819.37226	0.37226009	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.59	5	1				3				2	2	2	3	6.165	3.4663	2	0.003503	2317	160513_QHF_FH_JSI11Kac_3	100.19	37.474			1.0524	1.1148	13.797	9	1	Median	1.2896	1.0409	16.557	2	1	Median	0.89404	1.0606	7.7298	2	0	Median	1.0698	1.0438	9.3074	2	0	Median	1.0524	1.1509	22.957	3	0	Median	2631500000	1321300000	1310200000	386180000	162620000	223560000	850550000	461960000	388590000	631840000	299740000	332100000	762960000	396980000	365980000	8424	1000	7973	52164;52165;52166;52167;52168;52169;52170;52171;52172	70410;70411;70412;70413;70414;70415;70416;70417;70418;70419;70420;70421	70415			12	
DLQSSQGGQQPR	0	Unmodified	1299.6167	0.61674089	3286	Q7Z6J0	SH3RF1	E3 ubiquitin-protein ligase SH3RF1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.503	10.268	2	0.0019757	8051	160511_QHF_FH_JSI10i_1	60.434	20.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8425	3286	7974	52173	70422	70422			1	
DLQYHNLDLFK	1	Unmodified	1404.7038	0.70376498	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			72	71.215	3	0.00012327	63314	160511_QHF_FH_JSI10i_2	87.713	74.705			1.2684	1.5439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2684	1.5439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22922000	11499000	11423000	0	0	0	22922000	11499000	11423000	0	0	0	0	0	0	8426	5138	7975	52174	70423;70424	70424			2	
DLREVFSK	1	Unmodified	992.5291	0.52909508	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	3	3	1	48.724	47.928	3	0.0019448	41965	160511_QHF_FH_JSI11i_3	72.643	51.773			1.9775	1.9837	164.23	8	8	Median	2.3796	2.004	290.47	2	2	Median	1.1552	1.3841	204.66	2	2	Median	3.6702	3.5857	169.65	3	3	Median	1.0655	1.0974	NaN	1	1	Median	423110000	171210000	251900000	40627000	12055000	28572000	107920000	29987000	77938000	161750000	56104000	105640000	112810000	73065000	39748000	8427	2044	7976	52175;52176;52177;52178;52179;52180;52181;52182;52183;52184	70425;70426;70427;70428;70429;70430;70431;70432;70433;70434	70425			10	
DLRPAGSK	1	Unmodified	842.46102	0.46101552	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	7.6874	7.7851	3	0.058708	5244	160511_QHF_FH_JSI12i_3	29.755	9.9781			0.43649	0.44203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43649	0.44203	NaN	1	1	Median	624740000	332000000	292750000	0	0	0	0	0	0	0	0	0	624740000	332000000	292750000	8428	5141	7977	52185	70435	70435			1	
DLRPGDTVTITCSSYR	0	Unmodified	1839.8785	0.87851124	3008	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	15	0								3			1	1	1	60.314	49.558	3	0.00025095	27127	160513_QHF_FH_JSI11Kac_5	75.911	65.443			1.3002	1.2865	72.744	3	1	Median	NaN	NaN	NaN	0	0	Median	0.45783	0.53031	NaN	1	1	Median	1.3002	1.2865	NaN	1	0	Median	2.0421	2.2435	NaN	1	0	Median	8259500	4179500	4080000	0	0	0	3042700	1867700	1175000	3974500	1823700	2150900	1242400	488160	754190	8429	3008	7978	52186;52187;52188	70436;70437;70438	70437			3	
DLSAAGIGLLAAATQSLSMPASLGR	0	Unmodified	2370.2577	0.25769461	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.68	3	8	4							2	3	7	3	103.25	103.19	2;3	9.8592E-272	89027	160511_QHF_FH_JSI12i_2	361.22	346.87			0.92612	1.0365	34.645	14	2	Median	1.1023	0.94198	25.392	2	0	Median	0.92529	1.1219	6.4593	3	0	Median	0.88461	0.91086	49.127	7	2	Median	0.92561	0.99545	7.7447	2	0	Median	1374200000	690630000	683590000	203760000	104240000	99522000	385680000	187050000	198620000	655320000	339650000	315680000	129460000	59690000	69769000	8430	1556	7979	52189;52190;52191;52192;52193;52194;52195;52196;52197;52198;52199;52200;52201;52202;52203	70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453	70442			15	
DLSAENGLESLMLR	0	Unmodified	1546.7661	0.76610724	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	94.22	93.99	2	2.3104E-06	85205	160511_QHF_FH_JSI10i_1	128.67	92.341			0.90261	0.92609	13.636	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64429	0.74488	NaN	1	0	Median	0.98002	0.95748	NaN	1	1	Median	0.90261	0.92609	NaN	1	0	Median	103620000	56490000	47129000	0	0	0	27303000	14815000	12488000	42202000	25042000	17161000	34114000	16634000	17480000	8431	594	7980	52204;52205;52206	70454;70455;70456;70457	70457			4	
DLSDGIHVVK	1	Unmodified	1081.5768	0.57677356	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.76	10	11	2				5			5	7	9	7	43.987	41.291	2;3	1.4201E-07	36137	160511_QHF_FH_JSI9i_2	120.15	72.306			1.0522	0.96112	74.67	26	20	Median	1.1496	0.9778	68.365	5	2	Median	0.75271	0.91288	82.189	6	4	Median	1.0453	1.0435	86.63	8	8	Median	0.94234	1.0517	73.746	7	6	Median	3987200000	1786800000	2200400000	550400000	210250000	340160000	757180000	405090000	352090000	1658100000	718150000	939990000	1021500000	453330000	568150000	8432	2252	7981	52207;52208;52209;52210;52211;52212;52213;52214;52215;52216;52217;52218;52219;52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231;52232;52233;52234	70458;70459;70460;70461;70462;70463;70464;70465;70466;70467;70468;70469;70470;70471;70472;70473;70474;70475;70476;70477;70478;70479;70480;70481;70482;70483;70484	70476			27	
DLSDTVR	0	Unmodified	804.39775	0.39774656	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.907	19.714	2	0.012734	16925	160511_QHF_FH_JSI10i_1	68.915	8.127			1.0099	1.0928	35.723	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71704	0.8489	NaN	1	0	Median	1.4223	1.4069	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199090000	83689000	115410000	0	0	0	95772000	44105000	51667000	103320000	39584000	63738000	0	0	0	8433	4518	7982	52235;52236	70485;70486	70486			2	
DLSEFLR	0	Unmodified	878.44978	0.44978213	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		74.646	73.961	2	0.040857	65240	160511_QHF_FH_JSI9i_2	49.358	16.888			1.0446	1.0323	101.58	3	3	Plateau	3.0559	2.6838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0446	1.0323	120.63	2	2	Median	NaN	NaN	NaN	0	0	Median	48955000	22541000	26414000	12646000	3623500	9022000	0	0	0	36309000	18917000	17392000	0	0	0	8434	594	7983	52237;52238;52239	70487;70488;70489	70487			3	
DLSEVSETTESTDVK	1	Unmodified	1638.7472	0.74720552	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.42	7				5					1	3	5	3	49.717	45.588	2;3	6.3837E-26	41585	160511_QHF_FH_JSI11i_1	229.29	165			0.87642	0.88906	90.041	8	8	Median	1.6778	1.3991	NaN	1	1	Median	0.77412	0.90133	151.98	2	2	Median	0.35861	0.34865	81.033	3	3	Median	1.098	1.1589	101.41	2	2	Median	841100000	393520000	447580000	211510000	118670000	92836000	179970000	53678000	126290000	311280000	165400000	145880000	138350000	55773000	82575000	8435	1514	7984	52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250;52251	70490;70491;70492;70493;70494;70495;70496;70497;70498;70499;70500;70501;70502	70491			13	
DLSFFGGLLR	0	Unmodified	1123.6026	0.60259438	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.88	1	4							3	3	3	1	1	99.402	96.377	2	2.6581E-12	90456	160511_QHF_FH_JSI10i_2	155	110.55			0.90307	0.92444	22.882	6	1	Median	0.93344	0.81044	NaN	1	0	Median	0.70833	0.87108	32.541	3	1	Median	1.0495	1.0589	NaN	1	0	Median	0.8737	0.98106	NaN	1	0	Median	430260000	227820000	202440000	95525000	46685000	48840000	154960000	91935000	63029000	88993000	41443000	47550000	90783000	47759000	43024000	8436	2806	7985	52252;52253;52254;52255;52256;52257;52258;52259	70503;70504;70505;70506;70507;70508;70509;70510	70507			7	
DLSFGHSR	0	Unmodified	917.43553	0.43552905	2473	Q13835	PKP1	Plakophilin-1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	11.557	11.207	3	0.054241	8408	160511_QHF_FH_JSI12i_3	15.881	2.8445			1.0621	1.0529	6.4273	4	0	Median	1.322	1.091	NaN	1	0	Median	0.91236	1.0204	NaN	1	0	Median	1.1709	1.0864	NaN	1	0	Median	0.96347	0.95156	NaN	1	0	Median	904450000	385880000	518570000	35467000	17432000	18035000	134340000	58414000	75926000	382730000	157470000	225260000	351910000	152560000	199350000	8437	2473	7986	52260;52261;52262;52263	70511;70512;70513	70512			3	
DLSGLDAETLLK	1	Unmodified	1273.6765	0.67654718	1318	P29350	PTPN6	Tyrosine-protein phosphatase non-receptor type 6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			84.704	84.564	2	0.00088026	76703	160511_QHF_FH_JSI10i_1	77.744	49.017			0.22703	0.24248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22703	0.24248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8718400	6808100	1910300	0	0	0	8718400	6808100	1910300	0	0	0	0	0	0	8438	1318	7987	52264	70514;70515	70515			2	
DLSGMFTTESR	0	Unmodified	1242.5551	0.55505184	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		61.37	60.981	2	0.00014394	55119	160511_QHF_FH_JSI10i_1	94.692	83.541			0.65435	0.7424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65435	0.7424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29905000	14323000	15583000	0	0	0	29905000	14323000	15583000	0	0	0	0	0	0	8439	2297	7988	52265;52266	70516;70517	70517			2	
DLSHIGDAVVISCAK	1	Unmodified	1583.7977	0.79774172	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.25	2	6	1				5	3		2	6	5	4	70.351	64.901	2;3	2.2745E-06	57151	160511_QHF_FH_JSI11i_2	124.38	115.63			1.0635	1.1453	73.554	17	12	Median	0.49132	0.41688	108.82	2	2	Median	1.0628	1.234	76.051	6	4	Median	0.89512	0.90402	75.167	5	4	Median	1.2364	1.3306	15.369	4	2	Median	1869100000	1247600000	621510000	162060000	131030000	31033000	388900000	282640000	106260000	978070000	670160000	307920000	340060000	163760000	176310000	8440	1010	7989	52267;52268;52269;52270;52271;52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283	70518;70519;70520;70521;70522;70523;70524;70525;70526;70527;70528;70529;70530;70531;70532;70533;70534	70529			17	
DLSIGNPIPTVVSGAR	0	Unmodified	1594.8679	0.8678702	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	84.316	83.94	2	0.00011326	76437	160511_QHF_FH_JSI11i_1	112.51	95.07			0.96086	1.0909	26.091	5	5	Median	NaN	NaN	NaN	0	0	Median	0.96086	1.0909	NaN	1	1	Median	1.1378	1.0809	27.659	2	2	Median	0.9974	1.0266	43.835	2	2	Median	108980000	47001000	61983000	0	0	0	24883000	12147000	12736000	45965000	20494000	25470000	38137000	14360000	23777000	8441	644	7990	52284;52285;52286;52287;52288	70535;70536;70537;70538;70539	70535			5	
DLSILSYLSQLQPPMPK	1	Unmodified	1929.0281	0.028135591	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.99	102.83	3	0.020903	88795	160511_QHF_FH_JSI12i_2	29.723	19.966			0.77583	0.87544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77583	0.87544	NaN	1	0	Median	29875000	20704000	9171000	0	0	0	0	0	0	0	0	0	29875000	20704000	9171000	8442	2930	7991	52289	70540	70540			1	
DLSLDDFK	1	Unmodified	951.45493	0.45492709	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.24	8	4				5	2	3		6	5	5	6	68.492	64.689	1;2	2.2627E-06	59111	160511_QHF_FH_JSI12i_1	144.38	93.409			1.0652	1.0328	29.226	17	6	Median	1.2615	1.0688	31.362	4	3	Median	0.8488	1.0144	34.478	5	2	Median	1.0734	1.0493	37.243	4	1	Median	1.0673	1.1238	21.624	4	0	Median	8982700000	4169300000	4813400000	2072400000	924540000	1147800000	2324400000	1077400000	1247000000	2362000000	1120100000	1241900000	2223900000	1047300000	1176700000	8443	1338	7992	52290;52291;52292;52293;52294;52295;52296;52297;52298;52299;52300;52301;52302;52303;52304;52305;52306;52307;52308;52309;52310;52311	70541;70542;70543;70544;70545;70546;70547;70548;70549;70550;70551;70552;70553;70554;70555;70556;70557;70558;70559;70560;70561;70562;70563;70564;70565;70566;70567;70568;70569;70570;70571;70572;70573;70574;70575;70576;70577;70578;70579;70580	70549			39	
DLSLDDFKGK	2	Acetyl (K)	1178.5819	0.58191851	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0.577					1	4	1				2	2	2	77.376	68.584	2	1.0952E-17	33600	160513_QHF_FH_JSI10Kac_3	172.23	98.302			0.7895	0.87048	51.044	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94935	1.1295	NaN	1	0	Median	0.42439	0.42176	NaN	1	0	Median	0.7895	0.87048	NaN	1	0	Median	55495000	28918000	26576000	0	0	0	21576000	9838200	11738000	6933900	3469800	3464100	26984000	15610000	11374000	8444	1338	7993	52312;52313;52314;52315;52316;52317	70581;70582;70583;70584;70585;70586;70587;70588	70587	1264		8	
DLSLEEIQK	1	Unmodified	1073.5605	0.56045479	1105;3925	P16949;Q93045	STMN1;STMN2	Stathmin;Stathmin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.76	5		2		2	4	2			3	5	2	5	60.327	54.646	2	6.2104E-23	49474	160511_QHF_FH_JSI10i_1	186.3	118.32			0.94488	0.998	67.683	13	6	Median	2.6457	2.2156	108.34	3	3	Median	0.72706	0.8708	73.502	4	1	Median	0.94428	0.92711	8.1923	2	0	Median	1.326	1.415	60.962	4	2	Median	13257000000	6580200000	6677300000	4730800000	2233800000	2497000000	2818800000	1456900000	1361900000	2600900000	1370700000	1230200000	3106900000	1518800000	1588100000	8445	1105;3925	7994	52318;52319;52320;52321;52322;52323;52324;52325;52326;52327;52328;52329;52330;52331;52332	70589;70590;70591;70592;70593;70594;70595;70596;70597;70598;70599;70600;70601;70602;70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613;70614;70615;70616;70617	70605			29	
DLSLEEIQKK	2	Acetyl (K)	1243.666	0.66598249	1105;3925	P16949;Q93045	STMN1;STMN2	Stathmin;Stathmin-2	no	no	1	0	0	1			By MS/MS		13	0						1						1		70.898	61.439	2	0.01835	30943	160513_QHF_FH_JSI11Kac_3	64.297	35.21			0.023529	0.022353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.023529	0.022353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2252500	2190900	61595	0	0	0	0	0	0	2252500	2190900	61595	0	0	0	8446	1105;3925	7995	52333	70618	70618	958		1	
DLSLENGAHAYNR	0	Unmodified	1458.6852	0.68515481	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	35.464	34.522	2	2.1548E-07	29401	160511_QHF_FH_JSI11i_2	105.86	78.121			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8447	1273	7996	52334;52335;52336;52337	70619;70620;70621;70622	70621			4	
DLSLGLDDSR	0	Unmodified	1089.5302	0.53021729	2484	Q14004	CDK13	Cyclin-dependent kinase 13	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.778	56.119	2	0.054026	50920	160511_QHF_FH_JSI12i_1	42.336	28.199			3.1574	3.2933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1574	3.2933	NaN	1	1	Median	30532000	7029700	23503000	0	0	0	0	0	0	0	0	0	30532000	7029700	23503000	8448	2484	7997	52338	70623	70623			1	
DLSLLQIQMR	0	Unmodified	1215.6645	0.66454271	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.27	4	4						1		1	1	3	4	87.842	86.045	2	1.0963E-06	75435	160511_QHF_FH_JSI12i_2	126.41	76.599			0.28573	0.29585	84.364	8	8	Median	0.3128	0.27501	NaN	1	1	Median	0.26043	0.29719	NaN	1	1	Median	0.39901	0.41727	146.89	3	3	Median	0.261	0.29452	39.688	3	3	Median	165490000	116550000	48948000	13234000	9544000	3689700	26426000	19919000	6507100	37861000	26921000	10940000	87973000	60162000	27811000	8449	4518;3068	7998	52339;52340;52341;52342;52343;52344;52345;52346;52347	70624;70625;70626;70627;70628;70629;70630;70631;70632	70626			9	
DLSLLQIQMR	0	Oxidation (M)	1231.6595	0.65945733	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	14.5	0.5							2	2		1	2		1	78.886	68.391	2	5.4753E-05	35262	160513_QHF_FH_JSI9Kac_5	103.56	66.372			0.96183	0.81754	135.05	3	3	Median	0.96183	0.81754	NaN	1	1	Median	0.75174	0.89158	190.86	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40209000	31257000	8952000	8622800	6368600	2254200	30136000	24888000	5248100	0	0	0	1449700	0	1449700	8450	4518;3068	7998	52348;52349;52350;52351	70633;70634;70635;70636	70633		2185	4	
DLSLLSHGGR	0	Unmodified	1053.5567	0.55670682	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	2	3	43.113	42.576	2;3	7.0646E-07	37780	160511_QHF_FH_JSI10i_2	122.13	96.398			0.55323	0.59622	128.2	6	6	Median	NaN	NaN	NaN	0	0	Median	0.28251	0.34141	155.68	2	2	Median	0.36159	0.34629	NaN	1	1	Median	0.93706	1.0405	155.55	3	3	Median	381050000	186500000	194560000	0	0	0	177660000	111450000	66220000	58036000	24027000	34009000	145350000	51024000	94328000	8451	2266	7999	52352;52353;52354;52355;52356;52357;52358	70637;70638;70639;70640;70641;70642;70643	70641			7	
DLSLPPVDR	0	Unmodified	1010.5397	0.53965977	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	66.116	65.457	2	0.00029471	50512	160511_QHF_FH_JSI11i_1	94.302	64.117			0.74222	0.65995	161.87	6	6	Median	3.6871	3.0128	214.85	2	2	Median	0.53752	0.62825	NaN	1	1	Median	0.68508	0.66046	NaN	1	1	Median	3.0787	3.2453	226.92	2	2	Median	638550000	335150000	303400000	213620000	93969000	119650000	122080000	80253000	41827000	147970000	87969000	60001000	154880000	72959000	81921000	8452	1862	8000	52359;52360;52361;52362;52363;52364	70644;70645;70646;70647;70648;70649;70650;70651;70652;70653;70654;70655;70656	70645			13	
DLSLSMK	1	Unmodified	792.40514	0.40514012	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.04	44.553	2	0.013176	40003	160511_QHF_FH_JSI10i_1	71.296	28.821			1.8692	1.8597	5.2357	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.7551	2.0541	NaN	1	1	Median	1.8692	1.8597	NaN	1	1	Median	1.957	2.0108	NaN	1	1	Median	339050000	169830000	169220000	0	0	0	107110000	57879000	49228000	133480000	66087000	67390000	98464000	45862000	52601000	8453	2902	8001	52365;52366;52367	70657;70658;70659	70659			3	
DLSLSQLVHLIYVIGENR	0	Unmodified	2068.1317	0.13168946	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	100.58	91.141	3	1.0342E-16	55545	160513_QHF_FH_JSI10Kac_6	140.97	106.47			1.2153	1.2796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2153	1.2796	NaN	1	1	Median	73782000	30924000	42857000	0	0	0	0	0	0	0	0	0	73782000	30924000	42857000	8454	3238	8002	52368;52369	70660;70661	70661			2	
DLSLYLQHIR	0	Unmodified	1256.6877	0.68772099	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	73.662	72.604	3	0.00045539	64451	160511_QHF_FH_JSI10i_2	55.461	47.733			1.5799	1.6419	59.96	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9266	1.888	NaN	1	1	Median	0.94196	1.0151	67.999	2	2	Median	26761000	13564000	13198000	0	0	0	0	0	0	11238000	4036500	7201100	15524000	9527100	5996800	8455	3169	8003	52370;52371;52372;52373	70662;70663;70664;70665	70665			4	
DLSMSEEDQMMR	0	Unmodified	1470.5789	0.5789001	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	53.712	52.962	2	4.2361E-53	48005	160511_QHF_FH_JSI11i_1	215.93	214.34			0.81621	0.76652	47.582	6	5	Median	1.0153	0.83244	60.591	2	2	Median	0.48916	0.58688	NaN	1	1	Median	1.0115	0.99469	NaN	1	0	Median	0.94829	0.99843	74.231	2	2	Median	782190000	400720000	381470000	248240000	125080000	123160000	127560000	70552000	57008000	117270000	59631000	57643000	289120000	145460000	143660000	8456	3290	8004	52374;52375;52376;52377;52378;52379	70666;70667;70668;70669;70670;70671;70672	70667			7	
DLSPQHMVVR	0	Unmodified	1180.6023	0.6022768	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.334	38.883	2	0.0010847	33235	160511_QHF_FH_JSI11i_2	67.993	43.838			1.4003	1.3887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4003	1.3887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50525000	24001000	26524000	0	0	0	0	0	0	50525000	24001000	26524000	0	0	0	8457	1666	8005	52380	70673	70673			1	
DLSPVIVTQLALAIADLALQMPSWK	1	Unmodified	2692.4874	0.48736019	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	2				1					4	1	1	2	1	107.45	98.856	3	2.2635E-78	60231	160513_QHF_FH_JSI10Kac_6	211.68	192.13			0.82408	0.90287	32.092	5	1	Median	1.4516	1.2317	NaN	1	0	Median	0.82408	0.99417	NaN	1	0	Median	0.71109	0.68296	39.476	2	1	Median	0.80657	0.85326	NaN	1	0	Median	481940000	238320000	243620000	97525000	36849000	60676000	286720000	147960000	138760000	44204000	22619000	21585000	53492000	30888000	22604000	8458	5666	8006	52381;52382;52383;52384;52385	70674;70675;70676;70677;70678;70679;70680;70681;70682	70682			9	
DLSPVIVTQLALAIADLALQMPSWK	1	Oxidation (M)	2708.4823	0.48227482	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	106.69	99.11	3	8.8516E-53	59811	160513_QHF_FH_JSI10Kac_6	184.3	170.06			0.72775	0.82506	21.083	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59384	0.71079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89186	0.9577	NaN	1	0	Median	114420000	72839000	41582000	0	0	0	96569000	64066000	32504000	0	0	0	17852000	8773800	9078400	8459	5666	8006	52386;52387	70683;70684;70685	70685		2727	3	
DLSQESSSTAPGSEVTIK	1	Unmodified	1834.8796	0.87961668	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	46.894	45.952	2	0.0027692	41772	160511_QHF_FH_JSI12i_1	55.314	49.342			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8460	2686	8007	52388;52389	70686;70687	70686			2	
DLSQILK	1	Unmodified	815.47527	0.4752686	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	62.934	62.476	2	0.0088682	57012	160511_QHF_FH_JSI12i_1	70.912	19.947			1.2215	1.3882	114.07	5	5	Median	NaN	NaN	NaN	0	0	Median	0.57954	0.66769	103.51	2	2	Median	1.0117	0.95029	173.71	2	2	Median	2.408	2.425	NaN	1	1	Median	117820000	59433000	58387000	0	0	0	41501000	24007000	17494000	47992000	23549000	24443000	28327000	11877000	16450000	8461	2716	8008	52390;52391;52392;52393;52394;52395	70688;70689;70690;70691;70692;70693	70691			6	
DLSQLQENLK	1	Unmodified	1186.6194	0.61936665	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				2	1	1	1	61.275	57.683	2	7.2416E-07	50972	160511_QHF_FH_JSI9i_1	122.33	108.12			0.50868	0.45147	18.398	3	3	Plateau	0.48705	0.40463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51343	0.50372	NaN	1	1	Median	0.32583	0.34949	NaN	1	1	Median	414940000	285480000	129460000	162240000	106820000	55419000	0	0	0	251110000	177300000	73813000	1589600	1365200	224410	8462	3438	8009	52396;52397;52398;52399;52400	70694;70695;70696;70697;70698	70695			5	
DLSQMLK	1	Unmodified	833.43169	0.43168922	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	55.57	54.912	2	0.012322	49706	160511_QHF_FH_JSI12i_1	74.415	28.045			1.8202	1.8543	118.6	7	7	Median	0.76235	0.61938	155.07	2	2	Median	0.63332	0.75156	151.16	2	2	Median	0.93799	0.89731	144.2	2	2	Median	2.7858	2.8473	NaN	1	1	Median	445200000	233050000	212150000	114880000	56602000	58283000	122790000	73511000	49275000	141810000	74356000	67454000	65715000	28580000	37136000	8463	1962	8010	52401;52402;52403;52404;52405;52406;52407	70699;70700;70701;70702;70703;70704;70705	70701			7	
DLSQNFPTK	1	Unmodified	1048.5189	0.51892433	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.98	6					5				1	4	3	3	43.044	38.524	2	7.0139E-06	21364	160513_QHF_FH_JSI11Kac_3	127.56	95.094			1.0401	1.0176	94.482	11	11	Median	0.20996	0.17148	NaN	1	1	Median	1.0747	1.2518	101.43	4	4	Median	1.6917	1.6205	51.79	3	3	Median	0.70819	0.72802	81.582	3	3	Median	829350000	439630000	389720000	103500000	66433000	37070000	260190000	153910000	106280000	104840000	39224000	65614000	360810000	180060000	180750000	8464	5135	8011	52408;52409;52410;52411;52412;52413;52414;52415;52416;52417;52418	70706;70707;70708;70709;70710;70711;70712;70713;70714;70715;70716;70717;70718	70710			13	
DLSRFDASFFGVHPK	1	Unmodified	1721.8526	0.85255449	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	78.861	77.699	3;4	2.239E-05	65226	160511_QHF_FH_JSI10i_3	118.13	104.71			1.46	1.4816	32.589	5	2	Median	1.2471	1.0476	31.096	2	1	Median	1.5073	1.757	23.355	2	0	Median	NaN	NaN	NaN	0	0	Median	1.46	1.4816	NaN	1	1	Median	226120000	95531000	130590000	23325000	9212700	14112000	71028000	25592000	45435000	0	0	0	131770000	60726000	71041000	8465	1650	8012	52419;52420;52421;52422;52423	70719;70720;70721;70722;70723	70720			5	
DLSSEDTR	0	Unmodified	921.40395	0.40395415	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	10.12	9.6546	2	0.0016574	7530	160511_QHF_FH_JSI10i_1	83.313	49.956			1.5315	1.2551	36.8	3	2	Plateau	1.5315	1.2551	NaN	1	0	Median	0.59114	0.67995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.289	1.3147	NaN	1	1	Median	278030000	155660000	122370000	72318000	33102000	39217000	120380000	81739000	38640000	0	0	0	85330000	40822000	44508000	8466	1147	8013	52424;52425;52426;52427	70724;70725;70726;70727	70726			4	
DLSSEELAAFQK	1	Unmodified	1336.6511	0.65106071	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.165	66.58	2	3.1196E-53	59081	160511_QHF_FH_JSI9i_1	218.47	205.94			1.1858	0.86946	22.292	4	2	Linear	1.2455	1.0359	NaN	1	0	Median	0.92901	1.0733	NaN	1	0	Median	0.75468	0.72975	NaN	1	1	Median	0.68683	0.70603	NaN	1	1	Median	527590000	222890000	304700000	165600000	50529000	115070000	115970000	55838000	60133000	147450000	68115000	79334000	98569000	48405000	50164000	8467	5575	8014	52428;52429;52430;52431	70728;70729;70730;70731;70732;70733	70732			6	
DLSSHQLNEFLAQTLQR	0	Unmodified	1999.0123	0.012302606	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	3	2	92.77	92.464	2;3	1.0683E-06	82011	160511_QHF_FH_JSI10i_2	107.75	97.261			0.89496	0.94782	24.389	7	2	Median	1.0656	0.90998	25.758	2	2	Median	0.69798	0.87018	NaN	1	0	Median	1.1671	1.1392	30.743	2	0	Median	1.0743	1.1661	29.317	2	0	Median	733230000	350790000	382430000	169410000	79083000	90328000	108570000	56912000	51657000	265150000	108930000	156220000	190100000	105870000	84228000	8468	943	8015	52432;52433;52434;52435;52436;52437;52438;52439	70734;70735;70736;70737;70738;70739;70740;70741;70742;70743;70744;70745;70746	70744			13	
DLSSQLLK	1	Unmodified	902.5073	0.50729701	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	1	2	54.152	51.774	2	8.2029E-06	45820	160511_QHF_FH_JSI9i_1	122.13	47.713			1.1639	1.2466	39.415	5	2	Median	1.5793	1.2729	NaN	1	1	Median	1.1639	1.3712	NaN	1	0	Median	1.0945	1.0767	NaN	1	0	Median	0.74907	0.80813	61.296	2	1	Median	860820000	380520000	480300000	237340000	82239000	155100000	193110000	87980000	105130000	224260000	100180000	124080000	206110000	110120000	95987000	8469	2517	8016	52440;52441;52442;52443;52444;52445	70747;70748;70749;70750;70751;70752;70753;70754	70753			8	
DLSSSEPVHAK	1	Unmodified	1168.5724	0.57241646	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		19.216	18.321	2	0.00066826	15498	160511_QHF_FH_JSI9i_2	82.749	52.179			0.77758	0.66522	NaN	1	1	Median	0.77758	0.66522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21169000	11823000	9345200	21169000	11823000	9345200	0	0	0	0	0	0	0	0	0	8470	3748	8017	52446;52447	70755;70756	70756			2	
DLSSVQTLLTK	1	Unmodified	1203.6711	0.67106787	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		81.172	80.55	2	3.5106E-05	73187	160511_QHF_FH_JSI11i_1	99.53	73.488			1.5915	0.22988	114.36	3	3	Plateau	0.70824	0.58266	131.53	2	2	Median	1.5915	1.8448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67276000	34040000	33237000	39752000	22625000	17126000	27525000	11414000	16110000	0	0	0	0	0	0	8471	2470	8018	52448;52449;52450;52451	70757;70758;70759;70760	70757			4	
DLSTIEPLK	1	Unmodified	1014.5597	0.55972651	1487	P39687;O95626;O43423	ANP32A;ANP32D;ANP32C	Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D;Acidic leucine-rich nuclear phosphoprotein 32 family member C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	16					6				4	6	6	6	62.558	59.523	2	3.0199E-09	53873	160511_QHF_FH_JSI12i_1	163.99	0			1.7533	1.7004	99.851	22	19	Median	1.0405	0.82253	99.251	4	4	Median	1.5812	1.8549	98.296	6	5	Median	1.2619	1.2403	92.602	6	5	Median	2.1123	2.2455	121.49	6	5	Median	20054000000	10144000000	9910300000	5034800000	2414100000	2620700000	5258100000	2988700000	2269300000	5257300000	2538500000	2718800000	4503900000	2202500000	2301400000	8472	1487	8019	52452;52453;52454;52455;52456;52457;52458;52459;52460;52461;52462;52463;52464;52465;52466;52467;52468;52469;52470;52471;52472;52473	70761;70762;70763;70764;70765;70766;70767;70768;70769;70770;70771;70772;70773;70774;70775;70776;70777;70778;70779;70780;70781;70782;70783;70784;70785;70786;70787;70788;70789;70790	70768			30	
DLSTLLTMFGLPQ	0	Unmodified	1434.7429	0.74285261	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	105.14	105.07	2	7.3917E-05	95536	160511_QHF_FH_JSI12i_1	101.54	84.311			0.93593	0.89713	19.441	3	0	Median	NaN	NaN	NaN	0	0	Median	0.59427	0.68643	NaN	1	0	Median	0.93593	0.89713	NaN	1	0	Median	1.0163	1.0018	NaN	1	0	Median	34892000	17862000	17030000	0	0	0	14280000	9162200	5117400	8555400	2960600	5594800	12057000	5739500	6317700	8473	1708	8020	52474;52475;52476	70791;70792;70793;70794;70795;70796	70794			6	
DLSTPAQYALMEK	1	Unmodified	1465.7123	0.71228076	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.971	69.421	2	3.8228E-15	63250	160511_QHF_FH_JSI12i_1	155.97	126.23			1.1745	0.7058	31.178	4	2	Linear	0.84607	0.70191	NaN	1	0	Median	0.59041	0.70838	NaN	1	1	Median	0.72788	0.70323	NaN	1	1	Median	1.252	1.3142	NaN	1	0	Median	667090000	294300000	372800000	161160000	72675000	88486000	127550000	62707000	64839000	147600000	72725000	74870000	230790000	86191000	144600000	8474	4562	8021	52477;52478;52479;52480	70797;70798;70799;70800;70801	70799			5	
DLSTVEALQNLK	1	Unmodified	1329.714	0.71399532	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.32	7					1	4			2	3	2	5	79.218	75.267	2;3	1.0899E-33	68905	160511_QHF_FH_JSI9i_1	240.47	179.88			2.7345	2.6835	152.4	11	11	Median	1.1876	0.97351	214.5	2	2	Median	0.41057	0.48478	215.21	3	3	Median	3.8281	3.7277	46.483	2	2	Median	3.5369	3.756	124.24	4	4	Median	3381000000	1420600000	1960400000	1184600000	552100000	632500000	1035600000	493460000	542100000	556000000	191520000	364480000	604820000	183530000	421290000	8475	4419	8022	52481;52482;52483;52484;52485;52486;52487;52488;52489;52490;52491;52492	70802;70803;70804;70805;70806;70807;70808;70809;70810;70811;70812;70813;70814;70815;70816;70817;70818	70813			17	
DLSYCLSGMYDHR	0	Unmodified	1615.6759	0.67591203	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.8	0.4	1	4								1	2	2		61.72	61.074	2;3	7.1103E-05	53149	160511_QHF_FH_JSI11i_2	120.96	117.04			0.83032	0.9119	18.136	5	1	Median	1.037	0.9119	NaN	1	0	Median	0.87287	1.0363	10.916	2	0	Median	0.75347	0.75277	12.894	2	1	Median	NaN	NaN	NaN	0	0	Median	300510000	168520000	131990000	32414000	13319000	19095000	103110000	61952000	41157000	164990000	93247000	71740000	0	0	0	8476	1775	8023	52493;52494;52495;52496;52497	70819;70820;70821;70822	70820			3	
DLTDGHFENILADNSVNDQTK	1	Unmodified	2345.0771	0.077147287	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.35	0.478	11	6								3	6	5	3	74.189	73.587	2;3	1.0471E-36	67007	160511_QHF_FH_JSI11i_1	189.11	181.4			0.91754	0.85637	24.001	15	7	Median	1.0597	0.85181	18.38	3	0	Median	0.70943	0.85637	28.53	5	4	Median	0.81368	0.80109	32.669	4	3	Median	0.98091	1.0468	6.0591	3	0	Median	3118800000	1641300000	1477400000	659020000	302390000	356620000	921670000	548370000	373300000	761660000	358290000	403370000	776420000	432270000	344140000	8477	1464	8024	52498;52499;52500;52501;52502;52503;52504;52505;52506;52507;52508;52509;52510;52511;52512;52513;52514	70823;70824;70825;70826;70827;70828;70829;70830;70831;70832;70833;70834;70835;70836;70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847;70848;70849;70850;70851;70852;70853;70854;70855;70856	70823			34	
DLTDYLMK	1	Oxidation (M)	1013.4739	0.47394797	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.87	5.91	6	1	2			8	4	2		5	6	5	7	64.306	57.67	2	6.3125E-07	31024	160513_QHF_FH_JSI12Kac_3	138.9	120.16			0.9902	1.0185	54.892	22	2	Median	1.2562	1.019	18.605	5	0	Median	0.93035	1.1291	36.869	6	0	Median	1.0625	1.0487	54.432	4	1	Median	0.85771	0.93511	85.125	7	1	Median	7497900000	3685900000	3812000000	1767200000	783820000	983410000	1900400000	987690000	912670000	1692100000	810340000	881750000	2138200000	1104100000	1034100000	8478	1916;2015;2062;2070;2865	8025	52515;52516;52517;52518;52519;52520;52521;52522;52523;52524;52525;52526;52527;52528;52529;52530;52531;52532;52533;52534;52535;52536;52537	70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868;70869;70870;70871;70872;70873;70874;70875;70876;70877;70878;70879;70880;70881;70882;70883;70884;70885;70886;70887;70888;70889;70890;70891	70886		1574	35	
DLTDYLMK	1	Unmodified	997.47903	0.47903335	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	6.04	20	5	4		1	5	5	4	1	13	13	8	11	73.637	69.132	1;2	3.3215E-16	35063	160513_QHF_FH_JSI12Kac_3	166.96	107.76			0.98054	1.0183	42.429	39	8	Median	1.4541	1.1744	60.883	10	3	Median	0.96261	1.1022	28.786	11	2	Median	0.97374	0.94957	28.425	8	1	Median	0.91734	0.93117	43.55	10	2	Median	82007000000	32103000000	49904000000	19815000000	7160900000	12654000000	22432000000	9787100000	12645000000	20808000000	8132600000	12676000000	18952000000	7022300000	11929000000	8479	1916;2015;2062;2070;2865	8025	52538;52539;52540;52541;52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556;52557;52558;52559;52560;52561;52562;52563;52564;52565;52566;52567;52568;52569;52570;52571;52572;52573;52574;52575;52576;52577;52578;52579;52580;52581;52582	70892;70893;70894;70895;70896;70897;70898;70899;70900;70901;70902;70903;70904;70905;70906;70907;70908;70909;70910;70911;70912;70913;70914;70915;70916;70917;70918;70919;70920;70921;70922;70923;70924;70925;70926;70927;70928;70929;70930;70931;70932;70933;70934;70935;70936;70937;70938;70939;70940;70941;70942;70943;70944;70945;70946;70947;70948;70949;70950;70951;70952;70953;70954;70955;70956;70957;70958;70959;70960;70961;70962;70963;70964;70965;70966;70967;70968;70969;70970;70971;70972;70973;70974;70975;70976;70977;70978;70979;70980;70981;70982;70983;70984;70985;70986	70971			94	
DLTDYLMKILTER	1	Unmodified	1609.8385	0.83854391	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	102.54	102.48	2;3	5.226E-06	85048	160511_QHF_FH_JSI10i_3	119.01	76.806			0.73903	0.75934	45.146	4	1	Median	NaN	NaN	NaN	0	0	Median	0.51998	0.58917	5.177	2	1	Median	1.0242	0.94348	NaN	1	0	Median	1.4864	1.5096	NaN	1	0	Median	186590000	85745000	100850000	0	0	0	33728000	20505000	13223000	51352000	25746000	25605000	101510000	39494000	62020000	8480	1916;2015;2062;2070;2865	8026	52583;52584;52585;52586	70987;70988;70989;70990;70991;70992;70993	70989			7	
DLTDYLMKILTER	1	Acetyl (K)	1651.8491	0.84910859	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		100.53	92.344	2;3	1.5478E-108	52364	160513_QHF_FH_JSI11Kac_6	277.75	187.64			0.022745	0.021676	248.76	3	2	Median	NaN	NaN	NaN	0	0	Median	0.99934	1.1562	NaN	1	0	Median	0.016816	0.016052	42.479	2	2	Median	NaN	NaN	NaN	0	0	Median	1079200000	1038800000	40446000	0	0	0	54555000	28048000	26507000	1024700000	1010700000	13939000	0	0	0	8481	1916;2015;2062;2070;2865	8026	52587;52588;52589	70994;70995;70996	70995	1912		3	
DLTETLK	1	Unmodified	818.43855	0.43854874	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	36.113	35.404	2	0.0063825	32073	160511_QHF_FH_JSI12i_1	91.906	40.94			0.51413	0.47721	119.51	6	6	Median	1.5262	1.2702	137.71	2	2	Median	0.40815	0.47474	NaN	1	1	Median	0.46791	0.45515	NaN	1	1	Median	0.90139	0.94373	204.37	2	2	Median	238030000	132830000	105200000	59422000	28803000	30619000	49858000	32030000	17827000	58889000	36005000	22885000	69861000	35993000	33868000	8482	2986	8027	52590;52591;52592;52593;52594;52595	70997;70998;70999;71000;71001;71002	70999			6	
DLTEYLK	1	Unmodified	880.4542	0.45419881	2789;4988	Q9NTI5;Q29RF7	PDS5B;PDS5A	Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	63.819	63.194	2	0.0066081	57501	160511_QHF_FH_JSI12i_1	78.616	18.257			0.73061	0.69607	17.146	4	4	Median	0.94609	0.77822	NaN	1	1	Median	0.52803	0.61412	NaN	1	1	Median	0.6329	0.6226	NaN	1	1	Median	0.84339	0.87057	NaN	1	1	Median	508830000	216250000	292580000	139550000	55515000	84030000	104670000	61756000	42911000	137600000	50842000	86757000	127020000	48134000	78882000	8483	4988;2789	8028	52596;52597;52598;52599;52600;52601	71003;71004;71005;71006;71007;71008;71009;71010;71011	71006			9	
DLTEYLSR	0	Unmodified	995.49238	0.49237523	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	6.15	5	3					5			2	3	4	4	64.595	60.149	2	1.3625E-06	55201	160511_QHF_FH_JSI12i_1	151.56	93.75			1.1059	1.3308	38.596	11	5	Median	1.1028	0.91523	3.2387	2	1	Median	1.3679	1.6192	18.282	3	1	Median	1.6848	1.6358	60.988	3	2	Median	1.404	1.4863	36.162	3	1	Plateau	2309800000	806060000	1503700000	485810000	171940000	313860000	570080000	202370000	367710000	675770000	219800000	455970000	578150000	211940000	366210000	8484	230	8029	52602;52603;52604;52605;52606;52607;52608;52609;52610;52611;52612;52613;52614	71012;71013;71014;71015;71016;71017;71018;71019;71020;71021	71014			10	
DLTGELEYATK	1	Unmodified	1238.603	0.60304789	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.181	62.547	2	1.847E-07	56957	160511_QHF_FH_JSI12i_1	122.96	99.534			1.2266	1.5831	19.047	4	0	Linear	1.1958	1.0004	NaN	1	0	Median	1.2582	1.4951	NaN	1	0	Median	1.486	1.4474	NaN	1	0	Median	1.0821	1.1578	NaN	1	0	Median	215530000	106490000	109050000	38063000	18087000	19976000	74676000	34198000	40478000	58507000	31674000	26833000	44287000	22529000	21758000	8485	4598	8030	52615;52616;52617;52618	71022;71023;71024;71025;71026;71027;71028;71029	71025			8	
DLTGVQNLR	0	Unmodified	1014.5458	0.54580778	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	43.023	42.569	2	0.0001149	38474	160511_QHF_FH_JSI11i_1	110.31	84.416			0.13394	0.1361	153.09	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84012	0.79679	126.04	2	2	Median	0.087089	0.092263	NaN	1	1	Median	91722000	57423000	34299000	0	0	0	0	0	0	55647000	32045000	23602000	36075000	25379000	10697000	8486	2470	8031	52619;52620;52621;52622	71030;71031;71032;71033	71031			4	
DLTHSDSESSLHMSDR	0	Unmodified	1815.7694	0.76935472	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	28.163	27.264	3	0.00070004	22866	160511_QHF_FH_JSI12i_2	54.281	48.249			1.1856	1.2394	10.836	3	1	Plateau	1.2014	1.0168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1856	1.2628	NaN	1	0	Median	1.0192	1.1275	NaN	1	0	Median	88296000	38980000	49316000	22015000	8390300	13625000	0	0	0	38723000	16352000	22371000	27558000	14238000	13320000	8487	2446	8032	52623;52624;52625	71034;71035	71034			2	
DLTIGQMQGK	1	Unmodified	1089.5488	0.54884425	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	43.231	42.574	2	1.4873E-13	38297	160511_QHF_FH_JSI10i_1	141.52	110.21			0.71649	0.7337	55.705	4	3	Median	0.87996	0.72286	NaN	1	0	Median	0.67211	0.80617	NaN	1	1	Median	0.76379	0.7447	NaN	1	1	Median	0.24665	0.24944	NaN	1	1	Median	940140000	595260000	344880000	139120000	76956000	62163000	266400000	179130000	87272000	352720000	214570000	138150000	181910000	124610000	57302000	8488	5650	8033	52626;52627;52628;52629;52630;52631	71036;71037;71038;71039;71040;71041;71042;71043	71040			8	
DLTIGQMQGK	1	Oxidation (M)	1105.5438	0.54375887	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		7	6	1					1					1	1		35.308	26.421	2	0.014186	23953	160511_QHF_FH_JSI10i_1	55.549	38.773			0.19451	0.18929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19451	0.18929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11080000	9440100	1640200	0	0	0	0	0	0	11080000	9440100	1640200	0	0	0	8489	5650	8033	52632;52633	71044;71045	71045		2722	2	
DLTIPESSTVK	1	Unmodified	1188.6238	0.62378333	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	2	3	2	51.128	49.401	2	0.00043136	44848	160511_QHF_FH_JSI12i_1	87.298	47.253			0.36584	0.40877	51.22	8	7	Median	0.24571	0.19988	NaN	1	1	Median	0.23632	0.2769	54.523	2	1	Median	0.46121	0.45007	13.039	3	3	Plateau	0.22856	0.2403	75.692	2	2	Median	1461900000	1127400000	334500000	431030000	360500000	70533000	313070000	246630000	66440000	375270000	260860000	114410000	342510000	259390000	83119000	8490	2827	8034	52634;52635;52636;52637;52638;52639;52640;52641	71046;71047;71048;71049;71050;71051;71052;71053	71048			7	
DLTKPVVTISDEPDILYK	2	Unmodified	2045.0932	0.093238268	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	85.237	84.905	3	5.151E-07	77332	160511_QHF_FH_JSI11i_1	89.846	81.246			0.98045	1.1571	15.723	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98954	1.1709	NaN	1	0	Median	0.88911	0.85502	NaN	1	0	Median	0.9241	0.99629	NaN	1	0	Median	109200000	57721000	51480000	0	0	0	42964000	22789000	20175000	29496000	15760000	13735000	36742000	19172000	17570000	8491	2106	8035	52642;52643;52644	71054;71055	71054			2	
DLTLDQAYSYAVENAK	1	Unmodified	1799.8578	0.85775902	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	85.337	84.88	2;3	4.3364E-137	75657	160511_QHF_FH_JSI9i_1	317.84	206.78			0.93851	0.94356	10.537	8	0	Median	0.94928	0.78944	3.5281	2	0	Median	0.76678	0.89961	14.183	2	0	Median	0.96653	0.94356	3.9117	2	0	Median	0.9471	0.98402	0.95187	2	0	Median	1527700000	803830000	723830000	322020000	165720000	156300000	394570000	228590000	165970000	371690000	191650000	180030000	439390000	217860000	221520000	8492	1226	8036	52645;52646;52647;52648;52649;52650;52651;52652	71056;71057;71058;71059;71060;71061;71062;71063;71064;71065;71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076;71077;71078;71079;71080;71081	71078			26	
DLTLEENQVK	1	Unmodified	1187.6034	0.60338224	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.66	7				1	3				2	1	3	5	45.336	41.545	2	3.3632E-09	36745	160511_QHF_FH_JSI9i_1	187	117.18			0.63117	0.61473	88.893	11	11	Median	0.68129	0.55941	105.88	2	2	Median	1.3566	1.6129	NaN	1	1	Median	0.63117	0.61473	80.25	3	3	Median	0.4646	0.51061	108.67	5	5	Median	1118500000	636780000	481740000	232960000	151960000	81001000	190190000	116200000	73985000	418300000	260830000	157480000	277070000	107790000	169280000	8493	2560	8037	52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663	71082;71083;71084;71085;71086;71087;71088;71089;71090;71091;71092	71088			11	
DLTNSHFFLFDFQK	1	Unmodified	1757.8413	0.8413211	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	1	1	2	1	95.017	89.474	3	7.9344E-06	44061	160513_QHF_FH_JSI12Kac_6	101.36	84.418			0.9644	0.82098	46.962	5	0	Median	0.9644	0.82098	NaN	1	0	Median	0.3967	0.48513	NaN	1	0	Median	1.4941	1.4511	7.9543	2	0	Median	0.7254	0.75646	NaN	1	0	Median	450710000	218890000	231810000	93056000	47359000	45698000	21231000	14666000	6565400	224930000	85007000	139920000	111490000	71863000	39630000	8494	305	8038	52664;52665;52666;52667;52668	71093;71094;71095	71095			1	
DLTNVQNLQK	1	Unmodified	1171.6197	0.619701	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4	5.2	3					1					1	3		41.156	40.793	2	6.114E-07	36718	160511_QHF_FH_JSI10i_1	121.09	81.025			0.76849	0.74587	84.825	3	3	Median	NaN	NaN	NaN	0	0	Median	0.52377	0.6074	NaN	1	1	Median	1.5129	1.4691	95.865	2	2	Median	NaN	NaN	NaN	0	0	Median	272050000	113440000	158610000	0	0	0	102980000	48647000	54336000	169070000	64793000	104280000	0	0	0	8495	2470	8039	52669;52670;52671;52672	71096;71097;71098;71099	71099			4	
DLTNVQNLQKK	2	Acetyl (K)	1341.7252	0.72522871	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	56.275	46.874	2	1.257E-07	24451	160513_QHF_FH_JSI10Kac_3	118.18	81.844			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1032300	1032300	0	0	0	0	1032300	1032300	0	0	0	0	0	0	0	8496	2470	8040	52673;52674	71100;71101	71101	2490		2	
DLTPEQAAER	0	Unmodified	1128.5411	0.54111633	881	P07902	GALT	Galactose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	25.202	24.198	2	0.00047528	21120	160511_QHF_FH_JSI11i_1	84.213	43.183			1.7831	1.9044	42.629	3	2	Median	1.7089	1.3807	54.268	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7831	1.9044	NaN	1	0	Median	103770000	35153000	68619000	64196000	22645000	41551000	0	0	0	0	0	0	39575000	12507000	27068000	8497	881	8041	52675;52676;52677;52678	71102;71103;71104;71105;71106	71102			5	
DLTQAWDLYYHVFR	0	Unmodified	1825.8788	0.87876924	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.223	86.83	3	3.201E-46	46813	160513_QHF_FH_JSI12Kac_6	196.58	170.86			0.95832	0.96256	31.909	4	0	Median	1.7294	1.4476	NaN	1	0	Median	0.59274	0.71267	NaN	1	0	Median	0.85516	0.81989	NaN	1	0	Median	1.0739	1.1301	NaN	1	0	Median	583240000	276710000	306530000	131890000	45313000	86575000	149860000	83806000	66050000	110960000	55721000	55243000	190530000	91869000	98661000	8498	1535	8042	52679;52680;52681;52682	71107;71108;71109;71110;71111;71112;71113;71114	71112			8	
DLTQEQTEK	1	Unmodified	1090.5142	0.51423288	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.39	3				2					1	1	2	1	15.08	11.999	2	6.3774E-09	10670	160511_QHF_FH_JSI10i_1	161.79	108.62			0.36931	0.38975	42.341	5	5	Median	0.49518	0.4085	NaN	1	1	Median	0.33253	0.38975	NaN	1	1	Median	0.35933	0.34249	6.5725	2	2	Median	0.83578	0.93469	NaN	1	1	Median	257280000	175760000	81524000	75714000	50216000	25498000	90746000	64511000	26236000	89572000	60360000	29212000	1248000	670220	577820	8499	4013	8043	52683;52684;52685;52686;52687	71115;71116;71117;71118;71119	71117			5	
DLTQLFMFAR	0	Unmodified	1240.6274	0.62742892	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.33	0.471	4	2								1	2	2	1	102.41	102.32	2	1.1003E-06	90662	160511_QHF_FH_JSI10i_2	133.23	133.23			1.0459	1.0667	24.83	6	0	Median	1.3858	1.1718	NaN	1	0	Median	1.0969	1.3317	38.394	2	0	Median	0.92837	0.91357	12.62	2	0	Median	1.0683	1.121	NaN	1	0	Median	294650000	144640000	150000000	30046000	12217000	17828000	109090000	53511000	55583000	96134000	49998000	46136000	59374000	28918000	30456000	8500	5305	8044	52688;52689;52690;52691;52692;52693	71120	71120			0	
DLTQLPVITSNTIVR	0	Unmodified	1668.941	0.94103514	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	92.153	92.119	2	0.00015527	83681	160511_QHF_FH_JSI11i_1	89.548	56.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11610000	11610000	0	0	0	0	11610000	11610000	0	0	0	0	0	0	0	8501	701	8045	52694;52695;52696;52697;52698	71121;71122;71123;71124;71125	71121			5	
DLTQMADELRR	0	Unmodified	1346.6612	0.66124824	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.829	1	1	2								1	1	2	60.994	60.464	2;3	0.00063097	52184	160511_QHF_FH_JSI12i_3	57.175	26.969			1.0254	1.1195	47.284	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50135	0.47336	NaN	1	1	Median	0.92222	0.9743	31.583	2	2	Median	115700000	58215000	57488000	0	0	0	0	0	0	17216000	9744500	7471600	98487000	48470000	50017000	8502	1514	8046	52699;52700;52701;52702	71126;71127;71128;71129	71129			4	
DLTQNTVVSINFK	1	Unmodified	1477.7777	0.77765821	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	75.43	75.066	2	0.00045489	68423	160511_QHF_FH_JSI12i_1	91.937	61.387			0.60167	0.64926	4.8182	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56917	0.67177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63602	0.62752	NaN	1	1	Median	28485000	18813000	9672000	0	0	0	16290000	11210000	5079800	0	0	0	12195000	7602500	4592200	8503	4628	8047	52703;52704	71130;71131	71130			2	
DLTQTASSTAR	0	Unmodified	1149.5626	0.56258006	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	2	3	3	22.11	18.174	2	2.4608E-13	15981	160511_QHF_FH_JSI12i_1	151.22	112.44			0.93631	0.96239	10.613	8	1	Median	0.97498	0.81215	NaN	1	0	Median	0.80301	0.95326	17.198	2	0	Median	1.0746	1.0236	6.846	3	1	Plateau	0.89991	0.95859	10.898	2	0	Median	666010000	346420000	319590000	149610000	65474000	84131000	184750000	113850000	70903000	163570000	78494000	85073000	168090000	88603000	79486000	8504	5161	8048	52705;52706;52707;52708;52709;52710;52711;52712;52713	71132;71133;71134;71135;71136;71137;71138;71139;71140;71141;71142;71143	71135			12	
DLTSQFLK	1	Unmodified	950.5073	0.50729701	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				63.015	61.948	2	0.0041163	55069	160511_QHF_FH_JSI9i_1	69.198	35.84			1.0402	0.89576	NaN	1	1	Median	1.0402	0.89576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37071000	21728000	15342000	37071000	21728000	15342000	0	0	0	0	0	0	0	0	0	8505	4572	8049	52714;52715	71144;71145	71145			2	
DLTSVMR	0	Unmodified	820.41129	0.41128813	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.153	41.666	2	0.023579	37577	160511_QHF_FH_JSI11i_1	58.604	32.496			0.76804	0.77095	56.885	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1884	1.1527	NaN	1	1	Median	0.49636	0.51563	NaN	1	1	Median	106050000	61900000	44150000	0	0	0	0	0	0	59731000	30625000	29106000	46319000	31275000	15044000	8506	2162	8050	52716;52717	71146;71147	71146			2	
DLTSVNILLK	1	Unmodified	1114.6598	0.6597749	2162;234	Q01082;O15020	SPTBN1;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	85.444	85.015	2	0.00053516	77397	160511_QHF_FH_JSI12i_1	87.308	48.286			2.4669	2.4394	33.155	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1783	3.0838	NaN	1	1	Median	1.9146	1.9296	NaN	1	1	Median	33735000	14483000	19251000	0	0	0	0	0	0	16121000	5942500	10179000	17613000	8540900	9072200	8507	2162;234	8051	52718;52719	71148;71149	71149			2	
DLTSWVTEMK	1	Unmodified	1208.5747	0.57472465	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	3	2	88.356	87.87	2	3.714E-05	77240	160511_QHF_FH_JSI11i_2	105.4	54.79			1.7728	1.7375	30.954	7	7	Median	1.5714	1.3319	NaN	1	1	Median	1.4703	1.7375	NaN	1	1	Median	2.3303	2.3229	35.984	3	3	Plateau	2.1946	2.2998	29.024	2	2	Median	186730000	66431000	120290000	21910000	8099300	13810000	15869000	6974600	8894400	102440000	35461000	66982000	46505000	15896000	30608000	8508	2470	8052	52720;52721;52722;52723;52724;52725;52726	71150;71151;71152;71153;71154;71155;71156	71154			7	
DLTTAGAVTQCYR	0	Unmodified	1454.6824	0.68237762	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	6.01	6					3	1			1	2	4	3	49.977	45.697	2	4.6527E-22	40989	160511_QHF_FH_JSI9i_1	173.71	141.77			0.89181	0.96939	62.744	10	7	Median	1.6057	1.3065	NaN	1	0	Median	0.52736	0.62276	72.567	2	1	Median	0.76082	0.75338	63.389	4	3	Median	1.5523	1.6656	67.607	3	3	Median	2813100000	1637800000	1175200000	287400000	125950000	161450000	435330000	313950000	121380000	1258400000	799760000	458670000	831880000	398180000	433700000	8509	2190	8053	52727;52728;52729;52730;52731;52732;52733;52734;52735;52736	71157;71158;71159;71160;71161;71162;71163;71164;71165	71163			9	
DLTTGYDDSQPDK	1	Unmodified	1453.6209	0.6208828	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			31.436	31.1	2	6.7208E-07	27196	160511_QHF_FH_JSI9i_1	91.855	65.34			1.7857	2.0008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7857	2.0008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33283000	11083000	22200000	0	0	0	33283000	11083000	22200000	0	0	0	0	0	0	8510	4080	8054	52737;52738	71166;71167	71167			2	
DLTTGYDDSQPDKK	2	Unmodified	1581.7158	0.71584581	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	25.217	24.658	2	1.2366E-12	21863	160511_QHF_FH_JSI12i_1	122.7	99.979			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43371000	35009000	8361900	8361900	0	8361900	13079000	13079000	0	8176400	8176400	0	13754000	13754000	0	8511	4080	8055	52739;52740;52741;52742;52743	71168;71169;71170;71171;71172	71170			5	
DLVAIEAK	1	Unmodified	857.48583	0.48583328	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.438	44.045	2	0.022779	39824	160511_QHF_FH_JSI11i_1	54.712	25.563			4.6843	4.4854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6843	4.4854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48652000	10816000	37836000	0	0	0	0	0	0	48652000	10816000	37836000	0	0	0	8512	2162	8056	52744	71173	71173			1	
DLVAQAPLKPK	2	Acetyl (K)	1220.7129	0.71287311	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4					2	2	2	66.007	56.56	2;3	1.1859E-11	28694	160513_QHF_FH_JSI10Kac_3	145.72	105.72			0.73332	0.72292	174.25	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73332	0.72292	NaN	1	0	Median	0.24074	0.25526	231.3	2	1	Median	37516000	26643000	10873000	0	0	0	6975800	6975800	0	13749000	8176500	5572900	16790000	11491000	5299800	8513	606	8057	52745;52746;52747;52748;52749;52750	71174;71175;71176;71177;71178;71179	71178	313		6	
DLVAQAPLKPK	2	Unmodified	1178.7023	0.70230842	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	1			By MS/MS		14	0							1					1		51.069	40.405	3	0.0088287	23698	160513_QHF_FH_JSI11Kac_4	49.5	32.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8514	606	8057	52751	71180	71180			1	
DLVASVPDMQGDGEDNHMDGDK	1	Unmodified	2343.9584	0.95835406	2582	Q14919	DRAP1	Dr1-associated corepressor	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.356	57.707	3	2.7332E-13	52351	160511_QHF_FH_JSI12i_1	113.99	110.84			0.88811	0.89117	10.299	4	0	Median	1.0913	0.89378	NaN	1	0	Median	0.74081	0.88856	NaN	1	0	Median	0.80799	0.77942	NaN	1	0	Median	0.97616	1.0028	NaN	1	0	Median	305960000	159320000	146640000	47591000	18115000	29477000	78298000	39502000	38796000	79759000	44029000	35730000	100310000	57673000	42636000	8515	2582	8058	52752;52753;52754;52755	71181;71182;71183;71184;71185;71186	71184			6	
DLVDAFLLK	1	Unmodified	1032.5855	0.58554733	4245	Q96SQ9	CYP2S1	Cytochrome P450 2S1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	98.548	98.374	2	0.0032261	86204	160511_QHF_FH_JSI9i_2	71.379	35.499			0.80428	0.76169	1.9941	2	2	Median	0.89693	0.77251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72119	0.75103	NaN	1	1	Median	15664000	5722600	9941000	11533000	3653000	7880100	0	0	0	0	0	0	4130500	2069600	2060900	8516	4245	8059	52756;52757	71187;71188	71188			2	
DLVDITK	1	Unmodified	802.44363	0.44363412	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	1	2		44.897	44.166	2	0.011676	39727	160511_QHF_FH_JSI11i_1	76.774	19.493			0.40492	0.34286	128.11	5	5	Median	0.97882	0.82475	124.13	2	2	Median	0.2221	0.26302	NaN	1	1	Median	1.0009	0.93579	196.08	2	2	Median	NaN	NaN	NaN	0	0	Median	325030000	186820000	138200000	128650000	67672000	60982000	61718000	47525000	14193000	134650000	71624000	63029000	0	0	0	8517	1045	8060	52758;52759;52760;52761;52762	71189;71190;71191;71192;71193	71189			5	
DLVDYITTHYK	1	Unmodified	1366.6769	0.67688153	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	1	5	75.429	74.676	2;3	1.3034E-06	64612	160511_QHF_FH_JSI12i_2	119.16	90.068			0.93993	1.0204	31.811	9	4	Median	0.86634	0.73328	13.842	2	1	Median	0.66775	0.82115	30.72	2	1	Median	1.1621	1.167	NaN	1	0	Median	1.176	1.2501	29.457	4	2	Median	709330000	313240000	396080000	122570000	50387000	72182000	180280000	82775000	97500000	131910000	67303000	64604000	274580000	112780000	161800000	8518	527	8061	52763;52764;52765;52766;52767;52768;52769;52770;52771;52772;52773	71194;71195;71196;71197;71198;71199;71200;71201;71202;71203;71204;71205;71206;71207;71208	71196			14	
DLVEAVAHILGIR	0	Unmodified	1404.8089	0.80889876	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.59		8	41						8	14	13	11	19	103.36	101.8	2;3	1.0016E-76	54798	160513_QHF_FH_JSI10Kac_6	241.03	201.03			1.008	1.0263	40.864	45	13	Median	1.3918	1.1632	41.618	12	3	Median	1.0258	1.131	20.42	10	3	Plateau	0.86033	0.86447	17.146	8	1	Median	0.80094	0.82937	50.874	15	6	Median	12053000000	6113700000	5939300000	1350100000	339060000	1011000000	1538300000	767770000	770520000	1525600000	741830000	783780000	7639000000	4265100000	3374000000	8519	1650	8062	52774;52775;52776;52777;52778;52779;52780;52781;52782;52783;52784;52785;52786;52787;52788;52789;52790;52791;52792;52793;52794;52795;52796;52797;52798;52799;52800;52801;52802;52803;52804;52805;52806;52807;52808;52809;52810;52811;52812;52813;52814;52815;52816;52817;52818;52819;52820;52821;52822;52823;52824;52825;52826;52827;52828;52829;52830	71209;71210;71211;71212;71213;71214;71215;71216;71217;71218;71219;71220;71221;71222;71223;71224;71225;71226;71227;71228;71229;71230;71231;71232;71233;71234;71235;71236;71237;71238;71239;71240;71241;71242;71243;71244;71245;71246;71247;71248;71249;71250;71251;71252;71253;71254;71255;71256;71257;71258;71259;71260;71261;71262;71263;71264;71265;71266;71267;71268;71269;71270;71271;71272;71273;71274;71275;71276;71277;71278;71279;71280;71281;71282;71283;71284;71285;71286;71287;71288;71289;71290;71291;71292;71293;71294;71295;71296;71297;71298;71299;71300;71301;71302;71303;71304;71305	71305			97	
DLVEKAK	2	Acetyl (K)	843.47018	0.47018322	64	CON__P81644			yes	yes	1	0	0	1				By MS/MS	13	0						1							1	35.401	26.896	2	0.04075	15502	160513_QHF_FH_JSI12Kac_3	69.998	23.628		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1673300	1673300	0	0	0	0	0	0	0	0	0	0	1673300	1673300	0	8520	64	8063	52831	71306	71306			1	
DLVEMCR	0	Unmodified	921.40482	0.40482255	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.997	34.41	2	0.011879	31107	160511_QHF_FH_JSI12i_1	76.035	45.849			1.6738	1.758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6738	1.758	NaN	1	1	Median	77586000	26462000	51124000	0	0	0	0	0	0	0	0	0	77586000	26462000	51124000	8521	4212	8064	52832	71307	71307			1	
DLVEVADILEK	1	Unmodified	1242.6707	0.67073352	3678	Q8TAA5	GRPEL2	GrpE protein homolog 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	98.777	98.61	2	8.792E-06	89411	160511_QHF_FH_JSI12i_1	102.06	63.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8522	3678	8065	52833;52834	71308;71309	71309			2	
DLVEYFK	1	Unmodified	912.45928	0.45928418	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	68.033	67.305	2	0.010062	61309	160511_QHF_FH_JSI12i_1	81.635	50.966			0.35832	0.33232	38.054	5	5	Median	0.35832	0.29279	NaN	1	1	Median	0.29147	0.33232	NaN	1	1	Median	0.2179	0.20917	NaN	1	1	Median	0.45815	0.4863	25.464	2	2	Median	86579000	60091000	26488000	9998400	7585600	2412800	25664000	16751000	8912500	20228000	14253000	5975000	30689000	21501000	9187600	8523	3667	8066	52835;52836;52837;52838;52839	71310;71311;71312;71313;71314	71312			5	
DLVHSNKK	2	Unmodified	939.51378	0.51377937	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	3	2	4	5.3479	5.1543	2;3	0.001396	2815	160511_QHF_FH_JSI12i_3	71.379	57.261			1.3054	1.274	92.901	11	8	Median	1.1885	0.94827	152.57	2	2	Median	0.26758	0.30829	89.424	3	2	Plateau	1.3788	1.3236	5.4052	2	0	Median	0.87641	0.86683	118.12	4	4	Median	4363300000	2706300000	1657000000	111690000	43942000	67747000	893420000	581360000	312060000	748510000	409900000	338610000	2609600000	1671100000	938540000	8524	5542	8067	52840;52841;52842;52843;52844;52845;52846;52847;52848;52849;52850;52851	71315;71316;71317;71318;71319;71320;71321;71322;71323;71324;71325;71326	71326			12	
DLVHTEGQLQNEEIVAHDGSATYLR	0	Unmodified	2794.3522	0.35219994	5649	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	2	8	4							2	3	5	4	65.511	64.896	3;4	2.1438E-126	56712	160511_QHF_FH_JSI11i_2	279.97	272.76			0.99993	1.0287	11.602	14	0	Median	1.1264	0.95204	1.8339	2	0	Median	0.90984	1.1584	7.3291	3	0	Plateau	0.99104	1.0244	14.938	5	0	Median	1.1336	1.0529	9.1134	4	0	Linear	4556800000	2116100000	2440700000	418650000	181230000	237420000	1129200000	560350000	568890000	1493500000	711730000	781760000	1515400000	662740000	852640000	8525	5649	8068	52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865	71327;71328;71329;71330;71331;71332;71333;71334;71335;71336;71337;71338;71339;71340;71341;71342;71343;71344;71345;71346;71347;71348	71339			22	
DLVIEALK	1	Unmodified	899.53278	0.53278348	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.933	67.624	2	0.005666	61279	160511_QHF_FH_JSI10i_1	61.962	7.413			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8526	5208	8069	52866	71349	71349			1	
DLVILLYETALLSSGFSLEDPQTHANR	0	Unmodified	3001.5397	0.53966635	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	4.29		5	5	12	6	3			60	22	31	25	13	106.41	99.557	2;3;4	1.4272E-99	56774	160513_QHF_FH_JSI10Kac_6	227.51	204.07			1.1375	1.1386	52.367	63	31	Median	1.3492	1.1548	22.032	19	8	Median	0.9514	1.1539	35.098	29	13	Median	0.92701	0.8988	100.42	12	9	Median	0.84148	0.90217	44.519	3	1	Median	5216900000	2528100000	2688800000	1566300000	668360000	897940000	3359300000	1683900000	1675400000	163290000	71931000	91361000	127950000	103860000	24089000	8527	880	8070	52867;52868;52869;52870;52871;52872;52873;52874;52875;52876;52877;52878;52879;52880;52881;52882;52883;52884;52885;52886;52887;52888;52889;52890;52891;52892;52893;52894;52895;52896;52897;52898;52899;52900;52901;52902;52903;52904;52905;52906;52907;52908;52909;52910;52911;52912;52913;52914;52915;52916;52917;52918;52919;52920;52921;52922;52923;52924;52925;52926;52927;52928;52929;52930;52931;52932;52933;52934;52935;52936;52937;52938;52939;52940;52941;52942;52943;52944;52945;52946;52947;52948;52949;52950;52951;52952;52953;52954;52955;52956;52957	71350;71351;71352;71353;71354;71355;71356;71357;71358;71359;71360;71361;71362;71363;71364;71365;71366;71367;71368;71369;71370;71371;71372;71373;71374;71375;71376;71377;71378;71379;71380;71381;71382;71383;71384;71385;71386;71387;71388;71389;71390;71391;71392;71393;71394;71395;71396;71397;71398;71399;71400;71401;71402;71403;71404;71405;71406;71407;71408;71409;71410;71411;71412;71413;71414;71415;71416;71417;71418;71419;71420;71421;71422;71423;71424;71425;71426;71427;71428;71429;71430;71431;71432;71433;71434;71435;71436;71437;71438;71439;71440;71441;71442;71443;71444;71445;71446;71447;71448;71449;71450;71451;71452;71453;71454;71455;71456;71457;71458;71459;71460;71461;71462	71430			113	
DLVIVAANLQK	1	Unmodified	1182.6972	0.69722304	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.56	6.06	3					1	5				4	2	3	77.705	69.974	2	1.349E-05	36580	160513_QHF_FH_JSI12Kac_4	105.78	57.961			1.0885	1.1346	190.43	4	4	Linear	NaN	NaN	NaN	0	0	Median	16.553	19.565	NaN	1	1	Median	70.905	71.592	NaN	1	1	Median	1.6807	1.712	72.301	2	2	Median	46013000	23156000	22857000	0	0	0	7101200	4378600	2722500	3705000	1542300	2162700	35207000	17235000	17972000	8528	721	8071	52958;52959;52960;52961;52962;52963;52964;52965;52966	71463;71464;71465;71466;71467;71468;71469;71470;71471	71470			9	
DLVLGPSGVLQGIRPGK	1	Unmodified	1704.9887	0.98865404	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		82.966	81.683	3	6.5673E-11	68643	160511_QHF_FH_JSI10i_3	140.74	129.68			0.72661	0.83731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72661	0.83731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58912000	31054000	27858000	0	0	0	58912000	31054000	27858000	0	0	0	0	0	0	8529	2827	8072	52967;52968;52969	71472;71473;71474;71475	71474			4	
DLVLPTQALPASPALK	1	Unmodified	1632.9451	0.94505789	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	91.884	91.423	2;3	0.00028246	81259	160511_QHF_FH_JSI9i_1	71.555	64.175			1.2245	1.0102	34.787	6	5	Median	1.2245	1.0102	14.2	2	1	Median	0.7955	0.88839	NaN	1	1	Median	1.0739	1.0307	52.505	2	2	Median	1.7366	1.7967	NaN	1	1	Median	66399000	34386000	32013000	21642000	10343000	11299000	13022000	9773700	3248400	23133000	10512000	12620000	8602600	3757500	4845100	8530	2682	8073	52970;52971;52972;52973;52974;52975	71476;71477;71478;71479;71480;71481	71480			6	
DLVLSVHNR	0	Unmodified	1051.5774	0.57744226	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.2	5.42		2	2						1		2	2	1	35.97	33.952	2;3	0.00030808	29714	160511_QHF_FH_JSI11i_3	93.162	76.386			0.80058	0.7654	41.083	5	2	Median	NaN	NaN	NaN	0	0	Median	1.1052	1.3258	5.2365	2	1	Median	0.66226	0.66059	20.827	2	1	Median	0.5961	0.61254	NaN	1	0	Median	231930000	122560000	109370000	0	0	0	49930000	21010000	28920000	117670000	68468000	49198000	64330000	33082000	31248000	8531	2604	8074	52976;52977;52978;52979;52980	71482;71483;71484;71485;71486;71487	71482			4	
DLVPDLSNFYAQYK	1	Unmodified	1671.8144	0.81443765	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	98.583	98.432	2;3	3.5752E-10	89230	160511_QHF_FH_JSI11i_1	152.07	118.98			0.87462	0.98448	8.2929	4	0	Linear	1.0216	0.84841	NaN	1	0	Median	0.85468	1.0197	NaN	1	0	Median	1.0141	1.0001	NaN	1	0	Median	0.94113	0.96906	NaN	1	0	Median	618020000	297100000	320920000	87844000	44620000	43224000	221530000	124980000	96544000	136690000	51081000	85606000	171960000	76412000	95546000	8532	1196	8075	52981;52982;52983;52984;52985;52986	71488;71489;71490;71491;71492;71493;71494;71495;71496;71497;71498	71488			11	
DLVPDNSK	1	Unmodified	886.43961	0.43961137	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12.4	0.49					3	2						2	3	26.747	19.39	2	0.024998	9645	160513_QHF_FH_JSI12Kac_2	53.166	28.244			0.82313	0.78635	85.758	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61314	0.60578	36.897	2	2	Median	2.1301	2.3363	100.06	3	2	Median	15417000	7631700	7784900	0	0	0	0	0	0	7785200	4128600	3656700	7631300	3503100	4128200	8533	5486	8076	52987;52988;52989;52990;52991	71499;71500;71501;71502;71503	71502			5	
DLVPNHLSYYLYNHVAMWPEQSDKWPTAVR	1	Unmodified	3628.7562	0.75615827	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	1	2	89.707	81.496	4;5	2.6074E-162	47016	160513_QHF_FH_JSI10Kac_6	263.4	246.78			0.96433	1.0027	22.459	8	2	Median	0.97649	0.83722	28.625	3	2	Median	0.88693	1.0632	8.3464	2	0	Median	1.0374	0.99609	NaN	1	0	Median	1.1589	1.2303	28.882	2	0	Median	1562100000	744610000	817540000	300250000	126140000	174110000	978230000	461410000	516820000	123120000	74394000	48730000	160540000	82660000	77879000	8534	5215	8077	52992;52993;52994;52995;52996;52997;52998;52999	71504;71505;71506;71507;71508;71509;71510;71511;71512;71513	71513			10	
DLVQLPVVTSSTIVR	0	Unmodified	1625.9352	0.93522148	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	92.967	92.573	2	0.032367	84182	160511_QHF_FH_JSI12i_1	64.64	47.615			0.60229	0.59409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60229	0.59409	NaN	1	1	Median	12155000	7721900	4433000	0	0	0	0	0	0	0	0	0	12155000	7721900	4433000	8535	700	8078	53000	71514	71514			1	
DLVSSLTSGLLTIGDR	0	Unmodified	1645.8887	0.88866522	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.13	0.618	2	9	4							3	4	5	3	102.4	102.31	2;3	4.2927E-84	90096	160511_QHF_FH_JSI11i_2	222.73	188.86			1.0461	1.0722	14.472	14	3	Median	1.4443	1.2441	1.5922	3	0	Median	0.79371	0.96565	18.336	4	2	Median	1.1601	1.1098	13.495	4	0	Median	0.90932	1.0191	8.8875	3	1	Median	2725200000	1323900000	1401200000	572470000	246530000	325930000	587770000	304470000	283300000	831860000	428320000	403530000	733070000	344590000	388480000	8536	1798	8079	53001;53002;53003;53004;53005;53006;53007;53008;53009;53010;53011;53012;53013;53014;53015	71515;71516;71517;71518;71519;71520;71521;71522;71523;71524;71525;71526;71527;71528	71526			14	
DLVTSLK	1	Unmodified	774.44872	0.4487195	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1				1	3	2	41.763	41.277	2	0.0080992	37367	160511_QHF_FH_JSI11i_1	73.616	16.153			0.5346	0.53406	23.305	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46631	0.45292	NaN	1	1	Median	0.61289	0.62974	NaN	1	1	Median	527260000	375720000	151540000	0	0	0	0	0	0	338610000	251770000	86838000	188660000	123950000	64704000	8537	1035	8080	53016;53017;53018;53019;53020;53021	71529;71530;71531;71532;71533;71534	71530			6	
DLVTTLGGALLWLSGHAGTQAQGAAR	0	Unmodified	2563.3507	0.35068379	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	99.226	90.943	3;4	4.3188E-94	54706	160513_QHF_FH_JSI10Kac_6	221.6	199.98			0.85173	1.0133	16.275	7	1	Median	1.335	1.1534	3.4336	2	0	Median	0.75839	0.90437	16.079	2	0	Median	0.96528	0.91204	22.24	2	1	Median	0.85173	0.90317	NaN	1	0	Median	1894800000	957320000	937510000	418370000	182060000	236310000	574910000	314340000	260570000	579430000	310700000	268730000	322120000	150220000	171900000	8538	1167	8081	53022;53023;53024;53025;53026;53027;53028	71535;71536;71537;71538;71539;71540	71539			5	
DLVVAYGTTENSPVTFAHFPEDTVEQK	1	Unmodified	2993.4294	0.4294472	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	91.759	91.583	3	4.5568E-14	83109	160511_QHF_FH_JSI10i_1	103.63	96.236			0.64844	0.73657	30.55	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.74259	0.84224	18.96	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3542	1.355	NaN	1	1	Median	63588000	30299000	33289000	0	0	0	46763000	26336000	20427000	0	0	0	16825000	3962700	12862000	8539	4007	8082	53029;53030;53031	71541;71542;71543;71544	71544			4	
DLVVLLFETALLSSGFSLEDPQTHSNR	0	Unmodified	2987.524	0.52401629	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	3.75		4	6	17	6	4	4	4	85	28	45	34	23	106.79	99.266	2;3;4	1.5481E-227	57906	160513_QHF_FH_JSI10Kac_6	307.66	287.9			0.93917	0.97302	62.187	84	38	Median	1.1859	1.0114	25.178	21	8	Median	0.05064	0.061237	72.638	36	12	Linear	0.90655	0.87306	40.991	15	11	Median	0.77672	0.84852	85.787	12	7	Median	14080000000	7753500000	6326500000	4236900000	2199400000	2037500000	8367000000	4770600000	3596400000	762220000	228750000	533470000	713880000	554750000	159130000	8540	898	8083	53032;53033;53034;53035;53036;53037;53038;53039;53040;53041;53042;53043;53044;53045;53046;53047;53048;53049;53050;53051;53052;53053;53054;53055;53056;53057;53058;53059;53060;53061;53062;53063;53064;53065;53066;53067;53068;53069;53070;53071;53072;53073;53074;53075;53076;53077;53078;53079;53080;53081;53082;53083;53084;53085;53086;53087;53088;53089;53090;53091;53092;53093;53094;53095;53096;53097;53098;53099;53100;53101;53102;53103;53104;53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118;53119;53120;53121;53122;53123;53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144;53145;53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156;53157;53158;53159;53160;53161	71545;71546;71547;71548;71549;71550;71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562;71563;71564;71565;71566;71567;71568;71569;71570;71571;71572;71573;71574;71575;71576;71577;71578;71579;71580;71581;71582;71583;71584;71585;71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597;71598;71599;71600;71601;71602;71603;71604;71605;71606;71607;71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630;71631;71632;71633;71634;71635;71636;71637;71638;71639;71640;71641;71642;71643;71644;71645;71646;71647;71648;71649;71650;71651;71652;71653;71654;71655;71656;71657;71658;71659;71660;71661;71662;71663;71664;71665;71666;71667;71668;71669;71670;71671;71672;71673;71674;71675;71676;71677;71678;71679;71680;71681;71682;71683;71684;71685;71686;71687;71688;71689;71690	71651			141	
DLVVPEK	1	Unmodified	798.44872	0.4487195	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	35.168	34.635	2	0.030259	31113	160511_QHF_FH_JSI11i_1	54.157	4.7987			0.30649	0.35439	140.77	5	5	Median	6.4171	5.2367	NaN	1	1	Median	0.30649	0.35439	NaN	1	1	Median	0.93716	0.90599	161.35	2	2	Median	0.2743	0.27864	NaN	1	1	Median	450660000	243410000	207250000	67881000	11620000	56262000	99073000	58381000	40692000	201390000	112560000	88825000	82319000	60845000	21475000	8541	2379	8084	53162;53163;53164;53165;53166	71691;71692;71693;71694;71695	71692			5	
DLWSLLHHQK	1	Unmodified	1275.6724	0.67240528	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	16	0									3	1		1	1	74.074	64.947	3	0.0553	34527	160513_QHF_FH_JSI9Kac_6	33.057	16.804			0.82458	0.88539	7.9177	3	0	Plateau	1.1332	0.94028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83151	0.80371	NaN	1	0	Median	0.82458	0.88539	NaN	1	0	Median	62902000	38451000	24451000	15042000	8276400	6766000	0	0	0	18983000	12639000	6344500	28877000	17536000	11341000	8542	4997	8085	53167;53168;53169	71696	71696			0	
DLWSLLSFLK	1	Unmodified	1220.6805	0.68051035	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		3							6	2	2	2	3	102.42	96.307	2	1.5337E-24	50921	160513_QHF_FH_JSI12Kac_6	180.44	135.36			1.2703	1.3318	141.98	8	4	Median	0.62021	0.52921	306.26	2	0	Median	0.75368	0.90815	140.41	2	2	Median	0.66846	0.66033	133.61	2	1	Median	1.2703	1.3318	8.5539	2	1	Median	815180000	439240000	375940000	193260000	71822000	121440000	568820000	331270000	237550000	41945000	31900000	10045000	11153000	4253000	6899800	8543	2540	8086	53170;53171;53172;53173;53174;53175;53176;53177;53178	71697;71698;71699;71700;71701;71702;71703;71704;71705;71706;71707;71708;71709	71706			12	
DLWVLHLATK	1	Unmodified	1194.6761	0.67609367	3694	Q8TBB5	KLHDC4	Kelch domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	4	1	85.806	77.472	2;3	8.6425E-06	41194	160513_QHF_FH_JSI12Kac_6	123.75	102.85			0.92104	0.93165	60.035	8	5	Median	0.9486	0.80375	NaN	1	0	Median	0.71595	0.85411	33.173	2	1	Median	0.8806	0.82644	86.98	4	4	Median	1.146	1.1905	NaN	1	0	Median	1000600000	520830000	479810000	160680000	79908000	80770000	314110000	182560000	131560000	410640000	207020000	203620000	115210000	51345000	63867000	8544	3694	8087	53179;53180;53181;53182;53183;53184;53185;53186	71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720	71717			11	
DLWYLETEKPPPPAR	1	Unmodified	1810.9254	0.92538508	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	69.786	68.885	3	0.00060988	60996	160511_QHF_FH_JSI10i_2	73.156	47.032			1.0498	1.2838	21.598	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0498	1.2838	NaN	1	1	Median	0.94439	0.94312	NaN	1	0	Median	1.2962	1.4298	NaN	1	1	Median	141740000	75937000	65798000	0	0	0	44605000	24654000	19951000	51191000	29484000	21706000	45940000	21799000	24141000	8545	1743	8088	53187;53188;53189	71721;71722;71723	71723			3	
DLYANNVLSGGTTMYPGIADR	0	Unmodified	2227.0579	0.057932169	2070;2015	P63267;P62736;P68032	ACTG2;ACTA2;ACTC1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	92.105	91.734	2;3	2.1726E-06	80505	160511_QHF_FH_JSI10i_1	123.38	102.92			4.4978	4.4646	18.088	2	2	Median	4.8212	3.9286	NaN	1	1	Median	4.196	5.0738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152930000	16625000	136310000	55854000	5065400	50789000	80085000	11559000	68525000	0	0	0	16994000	0	16994000	8546	2015;2070	8089	53190;53191;53192;53193	71724;71725;71726;71727	71726			4	
DLYANNVLSGGTTMYPGIADR	0	Oxidation (M)	2243.0528	0.052846792	2070;2015	P63267;P62736;P68032	ACTG2;ACTA2;ACTC1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1	no	no	0	0	1	0		By MS/MS			1.5	0.5	1	1									2			80.184	79.478	2;3	4.8523E-08	72323	160511_QHF_FH_JSI10i_1	91.076	77.397			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14210000	0	14210000	0	0	0	14210000	0	14210000	0	0	0	0	0	0	8547	2015;2070	8089	53194;53195	71728;71729	71728		1670	2	
DLYANTVLSGGSTMYPGIADR	0	Oxidation (M)	2216.0419	0.041947754	2865	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		92.356	91.998	2	0.0043402	83766	160511_QHF_FH_JSI11i_1	47.774	33.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8548	2865	8090	53196	71730	71730		2157	1	
DLYANTVLSGGSTMYPGIADRMQK	1	Unmodified	2587.2411	0.24105827	2865	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	85.663	84.636	3	0.0028253	73155	160511_QHF_FH_JSI12i_2	37.56	30.108			0.25154	0.26441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25154	0.26441	NaN	1	1	Median	13458000	12044000	1413800	0	0	0	0	0	0	0	0	0	13458000	12044000	1413800	8549	2865	8091	53197	71731;71732	71732			2	
DLYANTVLSGGTTMYPGIADR	0	Unmodified	2214.0627	0.062683196	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.834	20	8	9							12	9	7	9	89.099	88.558	2;3	2.3111E-211	80530	160511_QHF_FH_JSI11i_1	393.07	373.5			0.96107	0.9746	38.25	31	4	Median	1.4054	1.1415	36.488	8	2	Median	0.89004	1.1011	56.685	9	2	Median	0.94666	0.89234	19.455	7	0	Median	0.95867	0.94529	13.176	7	0	Median	36660000000	16050000000	20610000000	8551000000	3287500000	5263600000	13647000000	6524000000	7123100000	6961500000	2893300000	4068200000	7500400000	3344900000	4155400000	8550	1916;2062	8092	53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212;53213;53214;53215;53216;53217;53218;53219;53220;53221;53222;53223;53224;53225;53226;53227;53228;53229;53230;53231;53232;53233;53234	71733;71734;71735;71736;71737;71738;71739;71740;71741;71742;71743;71744;71745;71746;71747;71748;71749;71750;71751;71752;71753;71754;71755;71756;71757;71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770;71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789;71790;71791;71792;71793;71794;71795;71796;71797;71798;71799;71800;71801;71802;71803;71804;71805;71806	71741			73	
DLYANTVLSGGTTMYPGIADR	0	Oxidation (M)	2230.0576	0.057597819	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.65	9	13	3							6	7	5	7	80.131	79.394	2;3	8.4427E-86	70775	160511_QHF_FH_JSI9i_1	252.17	230.41			1.0811	0.99797	70.37	19	8	Median	1.4604	1.0169	18.406	4	2	Linear	1.1855	1.4259	115.46	7	3	Median	0.857	0.83123	37.66	4	2	Median	0.79601	0.84436	13.512	4	1	Median	6314800000	3484100000	2830600000	1286800000	587920000	698840000	2085800000	1387800000	698070000	1517600000	855350000	662250000	1424600000	653100000	771470000	8551	1916;2062	8092	53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245;53246;53247;53248;53249;53250;53251;53252;53253;53254;53255;53256;53257;53258;53259	71807;71808;71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822;71823;71824;71825;71826;71827;71828;71829;71830;71831;71832;71833;71834;71835;71836;71837;71838;71839;71840	71828		1575	34	
DLYANTVLSGGTTMYPGIADRMQK	1	Unmodified	2601.2567	0.25670833	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	3	2	3	85.657	85.135	3	9.6958E-36	74886	160511_QHF_FH_JSI11i_2	194.25	181.19			0.39581	0.42278	151.89	8	6	Median	5.6392	4.9457	NaN	1	1	Median	0.26039	0.3091	133.46	2	2	Median	0.074774	0.071545	133.23	2	2	Median	0.38441	0.39557	28.045	3	1	Plateau	821420000	618520000	202900000	99149000	9631500	89517000	161020000	148010000	13011000	157800000	147170000	10635000	403440000	313700000	89740000	8552	1916;2062	8093	53260;53261;53262;53263;53264;53265;53266;53267;53268	71841;71842;71843;71844;71845;71846;71847;71848;71849;71850;71851;71852;71853;71854	71850			14	
DLYANTVLSGGTTMYPGIADRMQK	1	Oxidation (M)	2617.2516	0.25162295	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	1				By MS/MS	3	0			2										2	77.57	77.298	3	5.5088E-09	67705	160511_QHF_FH_JSI12i_3	98.121	80.405			0.46723	0.46628	18.428	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46723	0.46628	18.428	2	2	Median	103550000	76782000	26770000	0	0	0	0	0	0	0	0	0	103550000	76782000	26770000	8553	1916;2062	8093	53269;53270	71855;71856	71856		1575;1576	2	
DLYANTVLSGGTTMYPGIADRMQK	1	2 Oxidation (M)	2633.2465	0.24653758	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	2	1				By MS/MS	3	0			1										1	70.123	69.825	3	0.0056853	60489	160511_QHF_FH_JSI12i_3	32.337	24.803			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8554	1916;2062	8093	53271	71857	71857		1575;1576	1	
DLYDAGVK	1	Unmodified	879.4338	0.43379771	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.8	8		1		1	4	1			4	3	5	3	33.58	28.964	2	0.0015988	27836	160511_QHF_FH_JSI10i_1	101.28	3.6822			0.46441	0.4585	120.61	15	14	Median	1.623	1.3416	141.7	4	3	Median	0.28963	0.34861	123.94	3	3	Median	0.46441	0.4585	126.75	5	5	Median	0.41123	0.44983	144.17	3	3	Median	19868000000	9866200000	10001000000	4471900000	2132000000	2340000000	5814100000	2916800000	2897300000	5445900000	2729600000	2716400000	4135600000	2087900000	2047700000	8555	870	8094	53272;53273;53274;53275;53276;53277;53278;53279;53280;53281;53282;53283;53284;53285;53286	71858;71859;71860;71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876	71866			19	
DLYDAGVKR	1	Acetyl (K)	1077.5455	0.54547343	870	P07355	ANXA2	Annexin A2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		47.11	37.723	2	0.038948	21023	160513_QHF_FH_JSI11Kac_3	59.245	25.448			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1463800	1463800	0	0	0	0	0	0	0	1463800	1463800	0	0	0	0	8556	870	8095	53287	71877	71877			1	
DLYEDELVPLFEK	1	Unmodified	1608.7923	0.79230522	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.42	101.31	2	7.8293E-41	92079	160511_QHF_FH_JSI10i_1	202.16	169.55			0.74376	0.96001	20.843	4	0	Linear	1.4421	1.1818	NaN	1	0	Median	0.90369	1.0419	NaN	1	0	Median	0.90962	0.8846	NaN	1	0	Median	0.69361	0.73025	NaN	1	0	Median	982660000	533070000	449590000	138360000	58519000	79836000	315280000	166270000	149010000	208250000	110390000	97859000	320770000	197890000	122880000	8557	326	8096	53288;53289;53290;53291	71878;71879;71880;71881;71882;71883;71884;71885	71883			8	
DLYEPSHGAK	1	Unmodified	1115.5247	0.52473799	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	17.16	16.265	2	0.00080553	13205	160511_QHF_FH_JSI12i_2	76.827	20.097			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8558	315	8097	53292;53293	71886;71887	71886			2	
DLYEPTHGGK	1	Unmodified	1115.5247	0.52473799	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.5	6.02	3	1					2			1	1		4	21.772	17.628	2	0.00083963	14995	160511_QHF_FH_JSI9i_1	76.064	17.083			1.7248	1.889	64.162	4	4	Median	NaN	NaN	NaN	0	0	Median	2.1969	2.5537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6697	1.826	66.46	3	3	Median	89119000	35258000	53861000	0	0	0	39427000	17132000	22294000	0	0	0	49692000	18126000	31566000	8559	678	8098	53294;53295;53296;53297;53298;53299	71888;71889;71890;71891;71892;71893	71891			6	
DLYIDRPLPYLIGSK	1	Unmodified	1761.9665	0.96652161	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	91.491	91.103	3	9.7705E-05	79031	160511_QHF_FH_JSI12i_3	99.451	82.704			0.6547	0.70195	40.841	4	3	Median	NaN	NaN	NaN	0	0	Median	0.87529	1.04	48.829	2	1	Median	0.6988	0.66917	NaN	1	1	Median	0.59255	0.58987	NaN	1	1	Median	162270000	92601000	69668000	0	0	0	24335000	11895000	12440000	61654000	35606000	26048000	76281000	45100000	31181000	8560	3011	8099	53300;53301;53302;53303	71894;71895;71896;71897	71897			4	
DLYILWK	1	Unmodified	949.5273	0.52730417	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.81		7						1	4	2	1	5	4	88.845	85.054	2	0.0028835	42909	160513_QHF_FH_JSI11Kac_6	95.62	68.096			0.35353	0.34397	174.69	7	7	Median	0.3488	0.31295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1187	2.0343	181.62	3	3	Plateau	9.783	10.538	228.9	3	3	Plateau	122720000	48274000	74449000	8985300	3210200	5775200	3387400	0	3387400	60322000	21971000	38352000	50028000	23093000	26935000	8561	5119	8100	53304;53305;53306;53307;53308;53309;53310;53311;53312;53313;53314;53315	71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909	71900			12	
DLYIRPNIAQK	1	Unmodified	1329.7405	0.74048484	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		50.022	49.223	2;3	0.00012387	43656	160511_QHF_FH_JSI11i_3	101.54	73.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8562	5658	8101	53316;53317	71910;71911	71910			2	
DLYLIPLSAQDPVPSK	1	Unmodified	1754.9455	0.94545182	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	97.182	96.86	2;3	0.00033642	87768	160511_QHF_FH_JSI11i_1	83.314	65.878			0.72445	0.71772	95.426	3	3	Median	0.24901	0.23643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.655	1.5799	NaN	1	1	Median	0.72445	0.71772	NaN	1	1	Median	26174000	14679000	11495000	2557100	2074800	482330	0	0	0	10557000	4029000	6528500	13059000	8575100	4483900	8563	4413	8102	53318;53319;53320	71912;71913;71914	71912			3	
DLYNWLEVEFNPLK	1	Unmodified	1778.8879	0.88793694	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	100.71	95.932	2;3	3.0182E-05	90506	160511_QHF_FH_JSI11i_2	161.94	135.9			0.70782	0.7443	11.59	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66239	0.68573	NaN	1	1	Median	0.75637	0.80787	NaN	1	0	Median	120580000	53461000	67117000	0	0	0	0	0	0	76668000	34700000	41968000	43910000	18761000	25149000	8564	2502	8103	53321;53322	71915;71916	71915			1	
DLYSALIK	1	Unmodified	921.51713	0.51713341	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.64	5	3					3			2	3	4	2	71.463	68.12	1;2	0.00063796	61084	160511_QHF_FH_JSI9i_1	101.64	74.118			0.9533	0.98111	92.176	11	5	Median	3.3175	2.7901	152.83	2	1	Median	0.8427	0.98111	41.654	3	1	Median	1.0279	1.0067	122.28	4	2	Median	0.91924	0.96217	5.2943	2	1	Median	1429100000	407650000	1021400000	473130000	77557000	395570000	259700000	114050000	145650000	506680000	133390000	373290000	189550000	82653000	106900000	8565	575	8104	53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333	71917;71918;71919;71920;71921;71922;71923;71924;71925;71926;71927;71928;71929;71930;71931;71932;71933;71934	71928			17	
DLYVNIQPVQEPK	1	Unmodified	1541.809	0.80895834	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			41.792	40.826	3	0.055214	35825	160511_QHF_FH_JSI10i_2	12.383	6.7253			0.62665	0.75452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62665	0.75452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	235870000	140210000	95662000	0	0	0	235870000	140210000	95662000	0	0	0	0	0	0	8566	134	8105	53334	71935	71935			1	
DLYVNPNHQTSLGQER	0	Unmodified	1869.8969	0.8969385	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	41.243	40.325	3	0.0049257	34612	160511_QHF_FH_JSI11i_2	61.127	55.005			1.2106	1.2726	5.1549	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2278	1.2271	NaN	1	0	Median	1.1937	1.3199	NaN	1	0	Median	87996000	35680000	52317000	0	0	0	0	0	0	67132000	26816000	40316000	20865000	8863500	12001000	8567	5718	8106	53335;53336	71936	71936			0	
DMAAAGLHSNVR	0	Unmodified	1240.5983	0.59825406	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.678	24.325	2	3.5307E-06	20287	160511_QHF_FH_JSI11i_2	114.83	96.522			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8568	5351	8107	53337	71937	71937			1	
DMAAFNERPIIFALSNPTSK	1	Unmodified	2221.1201	0.1201385	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.38	0.484		5	3							3	3	2		97.4	97.219	3	5.986E-07	85940	160511_QHF_FH_JSI10i_2	103.27	88.5			0.66145	0.56033	48.279	8	8	Median	0.64054	0.51948	40.616	3	3	Plateau	0.3243	0.38857	78.513	3	3	Plateau	0.65102	0.62644	22.9	2	2	Median	NaN	NaN	NaN	0	0	Median	260340000	162780000	97555000	92347000	51042000	41305000	93223000	60027000	33196000	74770000	51716000	23054000	0	0	0	8569	1616	8108	53338;53339;53340;53341;53342;53343;53344;53345	71938;71939;71940;71941;71942;71943;71944;71945;71946	71945			9	
DMAAFNERPIIFALSNPTSK	1	Oxidation (M)	2237.1151	0.11505312	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	1	1	By MS/MS				3	0			2							2				87.868	86.696	3	0.0014278	70990	160511_QHF_FH_JSI9i_3	46.702	37.419			0.90654	0.77305	NaN	1	1	Median	0.90654	0.77305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9731200	5159000	4572100	9731200	5159000	4572100	0	0	0	0	0	0	0	0	0	8570	1616	8108	53346;53347	71947;71948	71948		1291	2	
DMAAPGTSSVPAPTAGNAEK	1	Unmodified	1870.8731	0.87309151	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	44.23	43.568	2;3	1.5171E-08	39257	160511_QHF_FH_JSI11i_1	110.77	92.966			0.95335	0.97194	7.3126	5	1	Median	1.1893	0.97194	NaN	1	0	Median	0.95295	1.1091	NaN	1	0	Median	0.95335	0.9251	NaN	1	0	Median	0.97183	1.0037	6.1379	2	1	Median	686030000	361470000	324560000	127590000	62642000	64949000	149010000	83794000	65214000	163650000	84213000	79439000	245780000	130820000	114960000	8571	3216	8109	53348;53349;53350;53351;53352;53353	71949;71950;71951;71952;71953;71954;71955;71956;71957;71958;71959;71960;71961	71949			13	
DMAGAQAAAVALNEEFLR	0	Unmodified	1875.9149	0.91489675	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									3	4	4	3	99.282	99.141	2;3	1.7062E-23	89687	160511_QHF_FH_JSI10i_1	136.17	105.62			0.93565	1.0887	66.456	13	13	Median	2.5891	2.0932	77.683	3	3	Median	2.4397	2.8379	64.019	3	3	Plateau	1.1848	1.134	63.847	4	4	Median	0.54314	0.57976	80.3	3	3	Median	420740000	187590000	233150000	46836000	14786000	32049000	127010000	43678000	83332000	160380000	83280000	77104000	86512000	45848000	40664000	8572	2493	8110	53354;53355;53356;53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367	71962;71963;71964;71965;71966;71967;71968;71969;71970;71971;71972;71973;71974;71975	71972			14	
DMAGLLK	1	Unmodified	746.39966	0.39966081	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.728	38.346	2	0.038396	34444	160511_QHF_FH_JSI10i_1	48.174	1.8031			0.77699	0.90676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77699	0.90676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106430000	54524000	51902000	0	0	0	106430000	54524000	51902000	0	0	0	0	0	0	8573	1002	8111	53368	71976	71976			1	
DMAGLLKPTACTMLVSSLR	1	Unmodified	2063.0577	0.057737935	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	97.697	97.704	3	3.218E-09	84671	160511_QHF_FH_JSI12i_3	115.15	105.87			0.52814	0.55667	26.829	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68227	0.62906	36.606	2	2	Median	0.52814	0.55667	NaN	1	1	Median	132010000	83481000	48525000	0	0	0	0	0	0	110300000	71445000	38852000	21709000	12036000	9673500	8574	1002	8112	53369;53370;53371	71977;71978;71979	71979			3	
DMAIATGGAVFGEEGLTLNLEDVQPHDLGK	1	Unmodified	3096.5074	0.50737995	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	4	2	2	106.45	106.33	3	1.5645E-158	92002	160511_QHF_FH_JSI10i_1	284.06	278.28			0.86011	0.88325	34.158	8	6	Median	1.2422	1.1824	22.315	2	2	Median	0.65709	0.77254	38.282	3	1	Median	1.0709	1.0337	NaN	1	1	Median	0.61092	0.62906	18.394	2	2	Median	575680000	349700000	225970000	5031100	1732800	3298300	268390000	153050000	115340000	105170000	60970000	44201000	197080000	133950000	63136000	8575	980	8113	53372;53373;53374;53375;53376;53377;53378;53379;53380;53381;53382	71980;71981;71982;71983;71984;71985;71986;71987;71988;71989;71990;71991;71992	71985			13	
DMAIATGGAVFGEEGLTLNLEDVQPHDLGK	1	Oxidation (M)	3112.5023	0.50229457	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0			By matching	By MS/MS	1	0	2											1	1	100.87	100.75	3	9.3198E-17	91381	160511_QHF_FH_JSI12i_1	92.121	86.28			0.79312	0.79665	6.8828	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79143	0.75881	NaN	1	0	Median	0.79482	0.83638	NaN	1	0	Median	99638000	58368000	41270000	0	0	0	0	0	0	37270000	18778000	18492000	62368000	39590000	22778000	8576	980	8113	53383;53384	71993	71993		545	1	
DMALATK	1	Unmodified	748.37893	0.37892537	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.878	22.258	2	0.015196	19291	160511_QHF_FH_JSI10i_1	57.177	29.071			4.4798	4.372	174.23	3	3	Median	5.8035	4.7955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.4798	4.372	NaN	1	1	Median	0.21249	0.2242	NaN	1	1	Median	461390000	187780000	273610000	120520000	17069000	103460000	0	0	0	123100000	22724000	100380000	217760000	147990000	69773000	8577	1298	8114	53385;53386;53387;53388	71994;71995;71996;71997	71996			4	
DMALNIGNEIDAQNPQIK	1	Unmodified	1982.9731	0.97313991	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	77.841	77.443	2;3	2.2122E-11	70271	160511_QHF_FH_JSI10i_1	145.71	132.05			0.59618	0.76713	8.3037	6	3	Linear	0.97172	0.79127	NaN	1	1	Median	0.63331	0.73878	0.94489	2	0	Median	0.79332	0.76955	11.717	2	1	Median	0.87222	0.87868	NaN	1	1	Median	238790000	139820000	98970000	16393000	5558900	10835000	112410000	71431000	40981000	92404000	54576000	37828000	17580000	8253400	9326500	8578	101	8115	53389;53390;53391;53392;53393;53394;53395	71998;71999;72000;72001;72002;72003;72004;72005;72006;72007;72008	72004			11	
DMALVAPEAPSEQAR	0	Unmodified	1583.7614	0.76135622	4787	Q9H8M7	FAM188A	Protein FAM188A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.707	54.966	2	0.00071176	48803	160511_QHF_FH_JSI9i_1	86.114	62.51			3.2759	3.0322	2.8072	2	2	Median	3.6542	2.9727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9369	3.093	NaN	1	1	Median	60778000	8041800	52736000	21134000	3684000	17450000	15995000	0	15995000	0	0	0	23648000	4357800	19290000	8579	4787	8116	53396;53397;53398;53399	72009;72010;72011;72012	72012			4	
DMANPTALLLSAVMMLR	0	Unmodified	1845.9515	0.95148195	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.7		8	5						9	5	6	5	6	104.22	100.54	2;3	2.5403E-83	54559	160513_QHF_FH_JSI9Kac_6	276.97	255.42			1.1695	1.2074	20.919	21	5	Median	1.4674	1.2526	9.4684	5	3	Median	0.95912	1.1295	7.6992	5	2	Median	1.2671	1.2129	29.118	5	0	Median	0.91308	0.97997	27.786	6	0	Median	4421600000	1824500000	2597200000	2018300000	762100000	1256200000	1451300000	667380000	783960000	721740000	262490000	459250000	230300000	132490000	97809000	8580	1698	8117	53400;53401;53402;53403;53404;53405;53406;53407;53408;53409;53410;53411;53412;53413;53414;53415;53416;53417;53418;53419;53420;53421	72013;72014;72015;72016;72017;72018;72019;72020;72021;72022;72023;72024;72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040;72041;72042;72043;72044;72045	72032			33	
DMANPTALLLSAVMMLR	0	Oxidation (M)	1861.9464	0.94639657	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	3.24			1						14	5	1	5	4	101.97	92.888	2;3	3.6301E-43	53364	160513_QHF_FH_JSI11Kac_6	182.33	152.52			0.91788	0.93117	18.291	14	5	Median	1.2439	1.0761	25.847	5	2	Median	0.83349	0.9682	NaN	1	0	Median	0.86738	0.86871	10.59	5	2	Median	1.0605	1.1048	6.1213	3	1	Plateau	506590000	259480000	247110000	220010000	111580000	108430000	86763000	44900000	41863000	93347000	48754000	44593000	106480000	54244000	52232000	8581	1698	8117	53422;53423;53424;53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435;53436	72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058;72059;72060	72048		1373;1374;1375	14	
DMAQLPETEIAPAK	1	Unmodified	1512.7494	0.74939455	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	62.118	61.482	2	2.2526E-08	54540	160511_QHF_FH_JSI9i_1	101.39	76.602			1.1071	1.1769	15.899	4	4	Median	1.5984	1.3233	NaN	1	1	Median	0.92052	1.0747	NaN	1	1	Median	1.3316	1.2888	NaN	1	1	Median	0.90279	0.94488	NaN	1	1	Median	1712700000	699480000	1013300000	525100000	172780000	352330000	345780000	170280000	175490000	533100000	204690000	328410000	308770000	151730000	157040000	8582	1298	8118	53437;53438;53439;53440;53441	72061;72062;72063;72064;72065	72065			5	
DMAQLPETEIAPAK	1	Oxidation (M)	1528.7443	0.74430917	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	0		By MS/MS		By MS/MS	4.67	5.19	2				1						2		1	58.534	49.165	2	0.00048528	44195	160511_QHF_FH_JSI10i_1	72.652	62.699			0.90299	0.98495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90299	0.98495	NaN	1	0	Median	1743700	861930	881780	0	0	0	0	0	0	0	0	0	1743700	861930	881780	8583	1298	8118	53442;53443;53444	72066;72067;72068;72069	72067		941	4	
DMAQSIYRPSK	1	Unmodified	1294.634	0.63397086	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	30.417	30.385	2;3	0.0037357	26350	160511_QHF_FH_JSI11i_3	56.02	51.607			1.0841	1.0656	47.52	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75535	0.69113	59.405	2	2	Median	1.1682	1.1982	14.76	2	2	Median	278900000	134130000	144760000	0	0	0	0	0	0	135430000	69922000	65506000	143470000	64213000	79257000	8584	2443	8119	53445;53446;53447;53448;53449	72070;72071;72072;72073;72074;72075	72070			6	
DMASLPSESNEPK	1	Unmodified	1403.6239	0.62385968	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		38.59	37.84	2	5.1357E-23	34126	160511_QHF_FH_JSI10i_1	152.07	124.06			2.3483	2.0884	8.0586	2	2	Median	2.4174	1.9727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2812	2.2108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	348870000	110740000	238130000	131340000	46670000	84671000	0	0	0	217530000	64067000	153460000	0	0	0	8585	5755	8120	53450;53451;53452	72076;72077;72078	72077			3	
DMDATSELK	1	Unmodified	1008.4434	0.44337612	3533	Q8N4V1	MMGT1	Membrane magnesium transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.493	30.214	2	0.0054802	26942	160511_QHF_FH_JSI10i_1	64.04	46.655			3.9149	4.168	26.967	2	2	Median	NaN	NaN	NaN	0	0	Median	2.894	3.4444	NaN	1	1	Median	5.296	5.0436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90543000	20361000	70182000	0	0	0	43618000	11811000	31807000	46925000	8550600	38374000	0	0	0	8586	3533	8121	53453;53454	72079;72080	72080			2	
DMDDAYDR	0	Unmodified	999.36037	0.36037477	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.368	17.115	2	0.029875	14536	160511_QHF_FH_JSI10i_1	50.04	40.8			1.4316	1.6892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4316	1.6892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68246000	25215000	43031000	0	0	0	68246000	25215000	43031000	0	0	0	0	0	0	8587	874	8122	53455	72081	72081			1	
DMDDEESWIK	1	Unmodified	1266.5074	0.50743294	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.812	55.151	2	0.0030977	50125	160511_QHF_FH_JSI12i_1	70.908	52.597			1.487	1.5634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.487	1.5634	NaN	1	1	Median	29982000	12053000	17929000	0	0	0	0	0	0	0	0	0	29982000	12053000	17929000	8588	2470	8123	53456	72082	72082			1	
DMDEPSPVPNVEEVTLPK	1	Unmodified	1994.9507	0.95067313	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								4	2	3	3	67.254	66.576	2;3	0.00022974	73918	160511_QHF_FH_JSI11i_1	86.467	75.857			0.857	0.86796	18.405	11	7	Median	0.80066	0.69414	15.696	3	2	Median	0.76656	0.93674	19.401	2	1	Median	0.99814	0.95907	11.96	3	2	Median	0.93085	0.9638	21.404	3	2	Median	763610000	384200000	379400000	196820000	94063000	102760000	165310000	86729000	78585000	211720000	100810000	110910000	189750000	102600000	87157000	8589	3685	8124	53457;53458;53459;53460;53461;53462;53463;53464;53465;53466;53467;53468	72083;72084;72085;72086;72087;72088;72089;72090;72091;72092;72093;72094	72084			12	
DMDFLNK	1	Unmodified	881.3953	0.39530372	3697	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		54.222	53.428	2	0.016545	48240	160511_QHF_FH_JSI11i_1	63.287	48.874			3.7489	3.5924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7489	3.5924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59617000	29188000	30429000	19351000	19351000	0	0	0	0	40266000	9837100	30429000	0	0	0	8590	3697	8125	53469;53470	72095;72096	72095			2	
DMDLWEQQEEER	0	Unmodified	1606.657	0.65695073	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	58.276	57.736	2	6.5621E-05	52280	160511_QHF_FH_JSI11i_1	96.113	84.949			0.69877	0.70298	4.172	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74042	0.72403	NaN	1	0	Median	0.65947	0.68255	NaN	1	0	Median	129230000	67267000	61958000	0	0	0	0	0	0	56205000	28510000	27696000	73020000	38757000	34263000	8591	2502	8126	53471;53472	72097	72097			1	
DMDLWEQQEEERITTMQLER	0	Unmodified	2579.1632	0.16320188	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	87.511	87.291	3	2.602E-11	75742	160511_QHF_FH_JSI12i_3	133.47	122.17			0.88511	0.98753	22.97	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67961	0.83948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.1617	NaN	1	0	Median	102700000	45099000	57598000	0	0	0	28632000	17635000	10997000	17859000	0	17859000	56205000	27464000	28741000	8592	2502	8127	53473;53474;53475	72098;72099;72100;72101	72101			4	
DMEALLPLMNMVIYSIDK	1	Unmodified	2095.0404	0.040356536	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.87		10	1						8	3	5	5	6	104.9	101.78	2;3	3.4267E-08	92567	160511_QHF_FH_JSI11i_2	159.08	136.89			0.9131	0.87659	40.47	8	6	Median	0.98634	0.85827	19.732	3	3	Median	0.49962	0.57838	78.601	2	2	Median	0.90813	0.95198	8.6797	2	0	Median	0.54635	0.56964	NaN	1	1	Median	233150000	135900000	97244000	23985000	10402000	13583000	103410000	66274000	37134000	76825000	36021000	40803000	28929000	23205000	5723900	8593	3959	8128	53476;53477;53478;53479;53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490;53491;53492;53493;53494	72102;72103;72104;72105;72106;72107;72108;72109;72110;72111;72112;72113;72114;72115;72116;72117;72118;72119;72120;72121;72122;72123;72124	72115			23	
DMEALNVLPPDVLTR	0	Unmodified	1681.8709	0.87090667	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	99.477	99.341	2	0.00016387	87915	160511_QHF_FH_JSI9i_1	92.925	78.767			0.68058	0.6056	46.998	4	0	Median	0.73358	0.5975	NaN	1	0	Median	0.46988	0.54636	NaN	1	0	Median	0.63141	0.61381	NaN	1	0	Median	1.505	1.4901	NaN	1	0	Median	78464000	41870000	36595000	14365000	9259700	5105200	14513000	7466800	7045700	34128000	18111000	16017000	15459000	7032400	8426500	8594	1665	8129	53495;53496;53497;53498;53499	72125;72126;72127;72128;72129;72130	72129			6	
DMEDPTPVPNIEEVVLPK	1	Unmodified	2021.0027	0.0027087015	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	99.395	99.251	2;3	8.1959E-07	89744	160511_QHF_FH_JSI10i_1	114.72	102.45			0.79393	0.76539	25.958	9	8	Median	1.0863	0.87587	27.485	2	1	Median	0.51923	0.58715	12.987	2	2	Median	1.0115	0.98327	34.16	2	2	Median	0.73348	0.76539	12.113	3	3	Median	227850000	130550000	97306000	47287000	25008000	22280000	53653000	35385000	18268000	49523000	25291000	24233000	77388000	44863000	32526000	8595	3907	8130	53500;53501;53502;53503;53504;53505;53506;53507;53508	72131;72132;72133;72134;72135;72136;72137;72138;72139;72140;72141	72137			11	
DMEESIR	0	Unmodified	878.38038	0.38038194	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	22.651	19.747	2	6.141E-05	11770	160513_QHF_FH_JSI11Kac_3	124.59	85.776			1.0078	1.0382	13.04	6	0	Median	1.0976	0.89366	NaN	1	0	Median	0.98816	1.176	7.2123	2	0	Median	0.97645	0.95775	0.99173	2	0	Median	1.1014	1.167	NaN	1	0	Median	2819900000	1464800000	1355000000	621640000	294610000	327030000	733480000	407800000	325680000	712370000	350770000	361600000	752370000	411630000	340740000	8596	1050	8131	53509;53510;53511;53512;53513;53514	72142;72143;72144;72145;72146;72147;72148;72149;72150;72151	72146			10	
DMEIAQTQK	1	Unmodified	1062.5016	0.5015597	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				1	2	4	3	26.424	23.282	2	3.5113E-06	20743	160511_QHF_FH_JSI12i_1	112.84	93.138			0.35363	0.34306	140.13	9	9	Median	0.4138	0.34306	NaN	1	1	Median	0.68097	0.80017	141.16	2	2	Median	1.0805	1.0385	165.8	4	4	Median	0.16218	0.1743	98.812	2	2	Median	848580000	545350000	303230000	114510000	75800000	38715000	343240000	181640000	161590000	238690000	153700000	84990000	152140000	134210000	17928000	8597	1298	8132	53515;53516;53517;53518;53519;53520;53521;53522;53523;53524	72152;72153;72154;72155;72156;72157;72158;72159;72160;72161	72155			10	
DMEIAQTQK	1	Oxidation (M)	1078.4965	0.49647433	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			23.879	23.594	2	0.013663	20666	160511_QHF_FH_JSI10i_1	56.916	47.328			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8598	1298	8132	53525	72162	72162		942	1	
DMEIIAK	1	Unmodified	818.42079	0.42079019	5467	Q9UPT9	USP22	Ubiquitin carboxyl-terminal hydrolase 22	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	41.613	41.103	2	0.017401	37329	160511_QHF_FH_JSI12i_1	62.717	45.79			0.80386	0.90008	30.714	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6162	0.72436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0487	1.1184	NaN	1	1	Median	51567000	26405000	25162000	0	0	0	28353000	16027000	12325000	0	0	0	23214000	10378000	12837000	8599	5467	8133	53526;53527	72163;72164	72163			2	
DMELPTEK	1	Unmodified	961.44265	0.44264784	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	13	0						3					1	1	1	47.038	37.855	2	0.024998	20773	160513_QHF_FH_JSI12Kac_3	53.166	49.42			1.5631	1.5991	19.117	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1443	1.2996	NaN	1	0	Median	1.4144	1.3777	NaN	1	0	Median	1.6979	1.8561	NaN	1	0	Median	7340700	3180000	4160700	0	0	0	1285100	701230	583910	2971300	1230000	1741300	3084300	1248700	1835600	8600	1298	8134	53528;53529;53530	72165;72166	72166			2	
DMESDYSGQGVDQLQR	0	Unmodified	1826.7741	0.77410575	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.685	46.009	2	3.313E-290	41419	160511_QHF_FH_JSI10i_1	373.69	367.45			0.97911	0.99438	13.732	4	0	Median	1.3904	1.146	NaN	1	0	Median	0.7068	0.82577	NaN	1	0	Median	1.0476	1.0294	NaN	1	0	Median	0.91513	0.96055	NaN	1	0	Median	488010000	242060000	245940000	121370000	50707000	70659000	106720000	57083000	49635000	137990000	68990000	68998000	121940000	65286000	56651000	8601	815	8135	53531;53532;53533;53534	72167;72168;72169;72170;72171;72172;72173	72171			7	
DMESFATK	1	Unmodified	927.40078	0.40078303	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		32.852	32.546	2	0.0088708	28538	160511_QHF_FH_JSI9i_1	56.81	45.442			4.8111	5.7751	112.1	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.1084	2.4808	126.33	2	2	Median	0.78909	0.76774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111330000	39962000	71367000	0	0	0	77032000	25397000	51636000	34297000	14565000	19731000	0	0	0	8602	5232	8136	53535;53536;53537;53538	72174;72175;72176;72177	72177			4	
DMESPTK	1	Unmodified	806.34802	0.34801917	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			10.473	9.9613	2	0.019471	7816	160511_QHF_FH_JSI10i_1	58.286	38.723			1.1645	1.132	32.613	2	0	Median	1.1006	0.89889	NaN	1	0	Median	1.2321	1.4256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	303820000	138310000	165510000	137200000	62804000	74394000	166620000	75505000	91120000	0	0	0	0	0	0	8603	1298	8137	53539;53540	72178;72179	72179			2	
DMEVLSQEIVR	0	Unmodified	1317.6599	0.65985126	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				72.679	71.748	2	0.0067708	63817	160511_QHF_FH_JSI9i_1	53.08	34.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8604	2841	8138	53541	72180	72180			1	
DMFAFMGSLDTK	1	Unmodified	1361.5996	0.59955919	5076	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		100.47	100.46	2	0.0023558	91122	160511_QHF_FH_JSI10i_1	70.942	59.451			0.51886	0.55455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51886	0.55455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9013700	5929000	3084800	0	0	0	9013700	5929000	3084800	0	0	0	0	0	0	8605	5076	8139	53542;53543	72181;72182	72182			2	
DMFASVGADGSVR	0	Unmodified	1310.5925	0.59249998	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	54.957	54.175	2	9.0974E-07	49080	160511_QHF_FH_JSI11i_1	88.187	79.457			1.3206	1.2726	96.75	2	2	Median	0.78472	0.64204	NaN	1	1	Median	2.2224	2.5222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51949000	20123000	31826000	26985000	14819000	12166000	24964000	5304300	19660000	0	0	0	0	0	0	8606	1970	8140	53544;53545;53546;53547;53548	72183;72184;72185;72186;72187	72183			5	
DMFEEALR	0	Unmodified	1009.4539	0.45388123	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	59.09	58.428	2	0.00038974	51961	160511_QHF_FH_JSI9i_1	109.86	83.26			0.89111	1.0011	17.007	6	0	Median	1.2918	1.0713	NaN	1	0	Median	0.69581	0.84448	16.987	2	0	Median	0.92032	0.92129	24.928	2	0	Median	0.99367	1.0525	NaN	1	0	Median	1018600000	517970000	500590000	192620000	90702000	101920000	268150000	137330000	130810000	307970000	152170000	155800000	249820000	137770000	112060000	8607	1409	8141	53549;53550;53551;53552;53553;53554	72188;72189;72190;72191;72192;72193;72194;72195	72195			8	
DMFEILTR	0	Unmodified	1023.5059	0.5059168	2426	Q13496	MTM1	Myotubularin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.177	82.082	2	0.058405	70965	160511_QHF_FH_JSI12i_2	44.349	20.377			1.0774	1.1821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0774	1.1821	NaN	1	1	Median	8419300	4406000	4013300	0	0	0	0	0	0	0	0	0	8419300	4406000	4013300	8608	2426	8142	53555	72196	72196			1	
DMFPGPYPR	0	Unmodified	1078.4906	0.49060109	651	O95169	NDUFB8	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		56.006	55.272	2	0.00033354	50090	160511_QHF_FH_JSI11i_1	82.671	76.217			0.97288	0.89631	12.834	6	4	Median	1.0519	0.89389	2.8549	2	1	Median	0.80825	0.96596	24.552	2	2	Median	0.97038	0.95773	11.845	2	1	Median	NaN	NaN	NaN	0	0	Median	345890000	176300000	169590000	94693000	47803000	46890000	104050000	53899000	50152000	147150000	74600000	72546000	0	0	0	8609	651	8143	53556;53557;53558;53559;53560;53561	72197;72198;72199;72200;72201;72202;72203	72198			7	
DMFQETMEAMR	0	Unmodified	1387.557	0.55704245	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	76.929	76.187	2	1.66E-59	69322	160511_QHF_FH_JSI11i_1	232.97	228.67			0.95935	1.0246	15.295	9	1	Median	1.2782	1.0508	25.924	3	1	Plateau	0.84803	1.0409	6.6278	2	0	Median	1.0274	1.0049	8.0414	2	0	Median	0.95636	1.0378	3.4229	2	0	Median	2732300000	1285300000	1447000000	559910000	228920000	330990000	717860000	336870000	380990000	737920000	377700000	360210000	716600000	341810000	374780000	8610	1436	8144	53562;53563;53564;53565;53566;53567;53568;53569;53570	72204;72205;72206;72207;72208;72209;72210;72211;72212;72213;72214;72215;72216;72217;72218;72219;72220;72221	72205			18	
DMFQETMEAMR	0	Oxidation (M)	1403.552	0.55195707	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By matching	By MS/MS			1	0	2									1	1			53.688	52.898	2	0.014842	47687	160511_QHF_FH_JSI10i_1	48.028	44.441			1.0602	1.0182	5.6248	2	0	Median	1.297	1.0595	NaN	1	0	Median	0.86674	0.9785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52555000	29956000	22599000	21891000	13235000	8656000	30664000	16721000	13943000	0	0	0	0	0	0	8611	1436	8144	53571;53572	72222	72222		1094	1	
DMGEMVTQGQTDAQYMFLR	0	Unmodified	2219.965	0.96495976	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	96.237	96.039	2;3	3.682E-10	87068	160511_QHF_FH_JSI10i_1	162.22	128.95			0.79804	0.80244	35.666	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89571	0.86382	31.231	2	1	Median	0.65749	0.66818	46.704	2	2	Median	55123000	36146000	18977000	0	0	0	9824100	9824100	0	26642000	15638000	11004000	18657000	10684000	7973200	8612	2162	8145	53573;53574;53575;53576;53577	72223;72224;72225;72226;72227	72227			5	
DMGGYSTTTDFIK	1	Unmodified	1434.6337	0.63369609	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	63.02	62.35	2	3.2541E-15	55407	160511_QHF_FH_JSI9i_1	157.97	135.23			0.5507	0.64677	74.044	7	5	Median	0.85326	0.70573	71.203	2	1	Median	0.5507	0.64677	NaN	1	1	Median	0.92462	0.8966	85.513	2	2	Median	0.70082	0.72384	139.85	2	1	Median	1169200000	605630000	563610000	318720000	179930000	138800000	171440000	98323000	73119000	336930000	151950000	184980000	342150000	175430000	166720000	8613	386	8146	53578;53579;53580;53581;53582;53583;53584	72228;72229;72230;72231;72232;72233;72234;72235	72233			8	
DMGGYSTTTDFIK	1	Oxidation (M)	1450.6286	0.62861071	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		60.963	51.351	2	0.041921	27070	160513_QHF_FH_JSI11Kac_3	48.741	32.167			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8614	386	8146	53585	72236	72236			1	
DMGIQDDELSLR	0	Unmodified	1390.6398	0.6398441	4238	Q96S82	UBL7	Ubiquitin-like protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.471	63.763	2	7.3808E-05	56631	160511_QHF_FH_JSI9i_1	94.616	76.305			1.1522	1.106	42.346	3	2	Median	0.68965	0.5641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1522	1.106	NaN	1	1	Median	1.1768	1.2325	NaN	1	1	Median	94669000	45556000	49114000	26975000	13090000	13886000	0	0	0	32068000	16620000	15449000	35626000	15847000	19779000	8615	4238	8147	53586;53587;53588;53589	72237;72238;72239;72240	72240			4	
DMGLVTPEAASLGTVIK	1	Unmodified	1700.9019	0.90187244	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	93.305	92.911	2	0.0067931	84474	160511_QHF_FH_JSI12i_1	48.659	22.721			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8616	5136	8148	53590	72241	72241			1	
DMGSVALDAGTAK	1	Unmodified	1234.5864	0.58635197	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	46.601	45.662	2	1.2718E-05	41453	160511_QHF_FH_JSI12i_1	119.45	98.578			0.659	0.60669	34.232	2	2	Median	0.57522	0.47626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75499	0.77284	NaN	1	1	Median	145010000	91247000	53767000	76272000	47894000	28379000	0	0	0	0	0	0	68742000	43353000	25388000	8617	4861	8149	53591;53592	72242;72243	72242			2	
DMGTTDSGPYFEK	1	Unmodified	1446.5973	0.59731058	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			46.436	45.61	2	0.00058622	40964	160511_QHF_FH_JSI10i_1	87.184	82.391			2.0655	2.0478	35.447	2	2	Median	1.8866	1.5938	NaN	1	1	Median	2.2613	2.6311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72735000	32463000	40272000	32722000	13464000	19258000	40013000	18999000	21014000	0	0	0	0	0	0	8618	5464	8150	53593;53594	72244;72245	72244			2	
DMGTVVLGK	1	Unmodified	918.48445	0.48445308	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	8					2	2			2	2	4	4	50.622	46.816	2	4.8684E-06	42336	160511_QHF_FH_JSI11i_1	133.55	106.02			0.9507	1.0262	84.161	12	12	Median	1.222	1.0093	133.73	2	2	Median	0.95233	1.1463	109.66	2	2	Median	1.0492	1.0264	89.686	4	4	Median	0.9507	1.0262	88.345	4	4	Median	5033900000	2513500000	2520400000	1099200000	483430000	615740000	1224300000	576450000	647880000	1450600000	714530000	736040000	1259800000	739120000	520730000	8619	1069;3467	8151	53595;53596;53597;53598;53599;53600;53601;53602;53603;53604;53605;53606	72246;72247;72248;72249;72250;72251;72252;72253;72254;72255;72256;72257;72258	72246			13	
DMGTVVLGK	1	Oxidation (M)	934.47937	0.4793677	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	0			By MS/MS		13	0						1						1		35.098	26.211	2	0.0097201	15482	160513_QHF_FH_JSI11Kac_3	55.37	25.994			1.2713	1.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2713	1.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5424200	2281200	3143100	0	0	0	0	0	0	5424200	2281200	3143100	0	0	0	8620	1069;3467	8151	53607	72259	72259		714	1	
DMGYGNWISKPQEEK	2	Unmodified	1780.809	0.80903469	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	55.397	54.722	2;3	5.4115E-05	48422	160511_QHF_FH_JSI11i_3	97.45	85.165			1.1777	1.2471	18.058	6	0	Median	0.9846	0.84789	NaN	1	0	Median	0.8789	1.0983	NaN	1	0	Median	1.392	1.3415	0.72121	2	0	Median	1.1777	1.2484	9.7533	2	0	Median	696900000	312670000	384230000	107740000	57268000	50470000	103910000	53185000	50728000	240040000	99187000	140850000	245210000	103030000	142180000	8621	1857	8152	53608;53609;53610;53611;53612;53613;53614	72260;72261;72262;72263;72264;72265;72266;72267;72268	72260			9	
DMGYHVSMMADSTSR	0	Unmodified	1686.68	0.68001113	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	47.981	46.999	2;3	1.9801E-05	41359	160511_QHF_FH_JSI10i_2	111.43	111.43			0.97454	1.0074	17.098	8	0	Median	1.5189	1.3331	2.6245	2	0	Median	0.96633	1.1874	18.701	2	0	Median	0.97454	0.95263	3.3692	2	0	Median	0.86011	0.95399	2.1377	2	0	Median	582910000	305500000	277420000	129320000	54235000	75089000	103850000	60624000	43231000	198580000	111200000	87377000	151150000	79433000	71721000	8622	1479	8153	53615;53616;53617;53618;53619;53620;53621;53622	72269;72270;72271;72272;72273;72274;72275;72276;72277;72278;72279;72280;72281;72282	72280			14	
DMGYPLAVK	1	Unmodified	992.5001	0.50010314	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	55.239	54.325	2	0.0033775	49296	160511_QHF_FH_JSI12i_1	60.59	48.685			1.7381	1.6307	4.6373	2	0	Median	1.9727	1.6851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5314	1.5781	NaN	1	0	Median	62737000	27568000	35169000	31843000	12363000	19480000	0	0	0	0	0	0	30894000	15206000	15689000	8623	3920	8154	53623;53624	72283	72283			1	
DMHGQFK	1	Unmodified	861.38032	0.38032236	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	11.071	10.625	2	0.029275	8234	160511_QHF_FH_JSI12i_2	52.683	48.83			0.52718	0.55991	57.712	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36782	0.3723	NaN	1	1	Median	0.7556	0.84207	NaN	1	0	Median	162400000	96936000	65463000	0	0	0	0	0	0	89269000	57157000	32112000	73130000	39779000	33351000	8624	2674	8155	53625;53626	72284;72285	72284			2	
DMHSAYK	1	Unmodified	850.36434	0.36433794	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	8.1759	7.7524	2	0.00605	5368	160511_QHF_FH_JSI11i_2	94.262	36.798			1.1191	1.233	122.13	5	5	Median	NaN	NaN	NaN	0	0	Median	2.4057	2.8522	NaN	1	1	Median	1.098	1.1166	197.77	2	2	Median	0.61317	0.68387	83.358	2	2	Median	451100000	222530000	228570000	0	0	0	49826000	10576000	39249000	251000000	115280000	135720000	150270000	96673000	53602000	8625	910	8156	53627;53628;53629;53630;53631	72286;72287;72288;72289;72290	72288			5	
DMIDLEANFEK	1	Unmodified	1323.6017	0.60166768	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			76.96	76.793	2	0.00016215	69586	160511_QHF_FH_JSI10i_1	93.058	81.011			0.56755	0.6473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56755	0.6473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35208000	21559000	13649000	0	0	0	35208000	21559000	13649000	0	0	0	0	0	0	8626	3926	8157	53632	72291	72291			1	
DMIGIAK	1	Unmodified	746.39966	0.39966081	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.627	38.294	2	0.029275	34266	160511_QHF_FH_JSI10i_1	52.683	17.578			1.1673	1.2525	45.684	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77699	0.90676	NaN	1	0	Median	1.7538	1.7301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	220280000	106180000	114100000	0	0	0	106430000	54524000	51902000	113860000	51660000	62197000	0	0	0	8627	3377	8158	53633;53634	72292;72293;72294;72295	72293			4	
DMIHIADTK	1	Unmodified	1042.5117	0.51173046	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	3.26	7	6					1			2	4	5	3	37.74	36.461	2;3	0.0007838	32664	160511_QHF_FH_JSI11i_1	51.762	34.986			1.3106	7.7779	90.367	14	12	Linear	3.815	3.2586	68.014	2	2	Median	0.89383	1.095	27.695	4	3	Median	1.7756	1.7233	109.78	5	4	Median	0.66075	0.72296	128.66	3	3	Median	3218200000	656900000	2561300000	997070000	90253000	906810000	395220000	175000000	220210000	1411600000	287400000	1124200000	414280000	104240000	310040000	8628	5494	8159	53635;53636;53637;53638;53639;53640;53641;53642;53643;53644;53645;53646;53647;53648	72296;72297;72298;72299;72300;72301;72302;72303;72304;72305;72306;72307;72308;72309;72310	72296			15	
DMIILEK	1	Unmodified	860.46774	0.46774038	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.766	56.276	2	0.01483	51190	160511_QHF_FH_JSI12i_1	65.252	49.098			0.50287	0.48509	73.826	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.2405	1.475	NaN	1	1	Median	0.50287	0.48509	NaN	1	1	Median	1.8406	1.9617	NaN	1	1	Median	113140000	47317000	65819000	0	0	0	44985000	14259000	30726000	28669000	19840000	8828800	39483000	13219000	26264000	8629	3970	8160	53649;53650;53651	72311;72312;72313	72312			3	
DMIILPEMVGSMVGVYNGK	1	Unmodified	2052.0094	0.0093907588	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.799	8	10	10							6	8	8	6	102.57	102.48	2;3	3.0923E-148	91051	160511_QHF_FH_JSI10i_2	257.95	243.26			0.87399	0.93079	22.514	26	12	Median	1.0836	0.89843	20.267	6	3	Median	0.79815	0.93828	11.378	6	1	Median	0.97293	0.97666	28.971	8	6	Median	0.81313	0.86134	24.374	6	2	Median	9086800000	4862400000	4224400000	1063200000	534720000	528510000	1798900000	972320000	826600000	3758300000	1892100000	1866200000	2466400000	1463300000	1003100000	8630	2024	8161	53652;53653;53654;53655;53656;53657;53658;53659;53660;53661;53662;53663;53664;53665;53666;53667;53668;53669;53670;53671;53672;53673;53674;53675;53676;53677;53678;53679	72314;72315;72316;72317;72318;72319;72320;72321;72322;72323;72324;72325;72326;72327;72328;72329;72330;72331;72332;72333;72334;72335;72336;72337;72338;72339;72340;72341;72342;72343;72344;72345;72346;72347;72348;72349;72350;72351;72352;72353	72351			40	
DMIILPEMVGSMVGVYNGK	1	Oxidation (M)	2068.0043	0.0043053809	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	0		By matching		By MS/MS	1	0	2										1		1	101.8	101.72	3	0.0089319	92290	160511_QHF_FH_JSI12i_1	43.946	37.824			0.94125	1.0359	0.11288	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88452	1.0368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0016	1.0351	NaN	1	0	Median	107140000	59088000	48052000	0	0	0	42525000	25364000	17161000	0	0	0	64615000	33725000	30891000	8631	2024	8161	53680;53681	72354	72354		1683	0	
DMILQFISR	0	Unmodified	1121.5903	0.59031513	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.65		6	2					2	4	2	4	4	4	89.734	85.287	2	9.4948E-05	43435	160513_QHF_FH_JSI11Kac_6	113.66	95.75			1.1894	1.1429	72.822	13	7	Median	1.2568	1.0947	6.0942	2	0	Median	0.86821	1.0215	49.142	4	2	Median	1.636	1.5861	74.733	4	3	Median	0.91694	1.0397	133.24	3	2	Median	490180000	260660000	229520000	38257000	19145000	19112000	142020000	81209000	60814000	206480000	97426000	109060000	103420000	62879000	40537000	8632	1711	8162	53682;53683;53684;53685;53686;53687;53688;53689;53690;53691;53692;53693;53694;53695	72355;72356;72357;72358;72359;72360;72361;72362;72363;72364;72365;72366;72367;72368;72369;72370;72371	72358			17	
DMILQFISR	0	Oxidation (M)	1137.5852	0.58522975	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		2	2	1	1	80.372	69.875	2	2.7634E-07	35940	160513_QHF_FH_JSI9Kac_5	136.57	113.25			2.4705	2.2378	38.308	5	3	Median	2.6235	2.2378	NaN	1	1	Median	1.7448	2.0735	50.112	2	1	Median	2.4925	2.441	NaN	1	1	Median	1.0803	1.1722	NaN	1	0	Median	88976000	27889000	61087000	23226000	5574400	17652000	44404000	13760000	30644000	13074000	4287100	8787200	8271500	4267400	4004000	8633	1711	8162	53696;53697;53698;53699;53700;53701	72372;72373;72374;72375;72376;72377;72378;72379	72372		1389	8	
DMIPDLSEYK	1	Unmodified	1209.5587	0.55874023	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	70.664	70.298	2	0.0079407	63914	160511_QHF_FH_JSI11i_1	60.518	40.189			1.0433	1.0281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0433	1.0281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27688000	13394000	14294000	0	0	0	0	0	0	27688000	13394000	14294000	0	0	0	8634	409	8163	53702;53703;53704	72380;72381;72382	72380			3	
DMIPTEMQR	0	Unmodified	1119.5053	0.50526487	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	44.149	43.374	2	0.0031913	38508	160511_QHF_FH_JSI9i_1	71.501	54.725			1.0743	1.1025	46.205	5	2	Median	1.4049	1.1228	91.873	2	2	Median	1.0267	1.221	NaN	1	0	Median	1.0928	1.0673	NaN	1	0	Median	1.0743	1.1025	NaN	1	0	Median	248540000	113250000	135300000	82510000	32434000	50076000	60909000	26726000	34183000	57720000	23739000	33980000	47405000	30347000	17058000	8635	3900	8164	53705;53706;53707;53708;53709	72383;72384;72385	72384			3	
DMITWILQMFDTVK	1	Unmodified	1739.8627	0.86265017	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.65	99.93	2	9.1039E-05	59223	160513_QHF_FH_JSI10Kac_6	138.71	125.03			0.79404	0.95917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79404	0.95917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	275340000	159970000	115360000	0	0	0	275340000	159970000	115360000	0	0	0	0	0	0	8636	3429	8165	53710	72386	72386			1	
DMLANFR	0	Unmodified	865.41162	0.41162248	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	53.183	52.343	2	0.0030918	46170	160511_QHF_FH_JSI10i_2	106.76	84.139			1.0217	1.0014	15.248	7	1	Median	1.3477	1.1241	16.344	2	0	Median	0.78796	0.9458	22.117	2	0	Median	1.0292	1.0187	3.9963	2	1	Median	0.77158	0.84584	NaN	1	0	Median	910060000	454120000	455950000	186990000	75238000	111750000	270670000	144660000	126020000	269190000	136970000	132220000	183210000	97259000	85955000	8637	1085	8166	53711;53712;53713;53714;53715;53716;53717;53718;53719	72387;72388;72389;72390;72391;72392;72393;72394;72395;72396;72397;72398;72399;72400	72399			14	
DMLDQVYQPLAVR	0	Unmodified	1546.7814	0.78136338	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		82.259	81.657	2	0.00037995	74376	160511_QHF_FH_JSI11i_1	95.573	80.601			1.9839	1.7391	2.1479	2	2	Median	2.1943	1.7657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7936	1.7129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22775000	7403300	15372000	12690000	3651000	9038700	0	0	0	10085000	3752300	6333100	0	0	0	8638	4580	8167	53720;53721	72401;72402	72401			2	
DMLEAGILDTYLGK	1	Oxidation (M)	1553.7647	0.76471026	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	3	1	3	92.74	92.355	2	1.1648E-16	81891	160511_QHF_FH_JSI9i_1	131.43	109.97			0.90399	0.8794	4.8729	4	1	Median	1.03	0.87772	NaN	1	1	Median	0.70852	0.81192	NaN	1	0	Median	0.9186	0.88108	NaN	1	0	Median	0.88962	0.91091	NaN	1	0	Median	127050000	71034000	56018000	28629000	15277000	13353000	35605000	20396000	15210000	31531000	16869000	14662000	31286000	18492000	12794000	8639	1721	8168	53722;53723;53724;53725;53726;53727;53728;53729;53730;53731	72403;72404;72405;72406;72407;72408;72409;72410;72411;72412;72413;72414	72413		1395	12	
DMLEAGILDTYLGK	1	Unmodified	1537.7698	0.76979564	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								4	4	3	2	101.37	101.26	2;3	7.9112E-136	91995	160511_QHF_FH_JSI10i_1	292.57	252.57			0.89753	1.0478	32.603	10	1	Median	1.9134	1.5638	15.229	2	1	Median	0.86517	1.0486	19.457	3	0	Median	0.83415	0.83292	32.001	3	0	Median	0.94172	0.98929	27.048	2	0	Median	5230400000	2487200000	2743200000	774890000	251360000	523530000	1805400000	978520000	826870000	1341300000	628610000	712670000	1308800000	628720000	680090000	8640	1721	8168	53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743;53744	72415;72416;72417;72418;72419;72420;72421;72422;72423;72424;72425;72426;72427;72428;72429;72430	72424			16	
DMLEFPAQELRK	1	Unmodified	1475.7442	0.74424959	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	68.888	67.912	2;3	1.79E-05	59762	160511_QHF_FH_JSI9i_2	80.469	74.975			1.2541	1.0914	42.843	5	3	Median	1.2541	1.0914	NaN	1	0	Median	0.73947	0.8906	NaN	1	0	Median	1.6858	1.7083	NaN	1	1	Median	0.97098	1.1015	71.12	2	2	Median	267560000	150810000	116750000	33751000	13445000	20306000	73890000	46499000	27391000	63006000	32817000	30189000	96908000	58049000	38859000	8641	116	8169	53745;53746;53747;53748;53749;53750	72431;72432;72433;72434;72435;72436;72437;72438	72433			8	
DMLFQVLALEEPNVR	0	Unmodified	1772.9131	0.91310583	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9	7		2							2	1	2	1		97.645	93.806	2;3	1.4746E-07	89630	160511_QHF_FH_JSI11i_2	110.29	87.819			1.2934	1.0986	82.994	3	2	Plateau	1.2934	1.0986	NaN	1	0	Median	3.7073	4.3225	35.586	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224260000	60396000	163870000	95497000	36073000	59424000	128770000	24323000	104440000	0	0	0	0	0	0	8642	1433	8170	53751;53752;53753;53754	72439;72440;72441;72442	72440			3	
DMLGGNGISDEYHVIR	0	Unmodified	1774.8308	0.83083277	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		63.665	62.977	2;3	5.593E-12	54925	160511_QHF_FH_JSI11i_2	114.82	99.277			0.96953	1.0705	87.533	2	2	Median	NaN	NaN	NaN	0	0	Median	0.46164	0.57649	NaN	1	1	Median	2.0362	1.9879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51791000	32266000	19525000	0	0	0	41413000	28963000	12450000	10378000	3303200	7074600	0	0	0	8643	3912	8171	53755;53756;53757;53758	72443;72444;72445;72446	72445			4	
DMLGSLR	0	Unmodified	790.40072	0.40072345	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	44.722	43.913	2	0.056414	38702	160511_QHF_FH_JSI10i_2	41.652	32.412			1.2366	1.351	24.79	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.847	1.0517	NaN	1	0	Median	0.90898	0.90326	25.419	2	1	Median	1.2296	1.3797	NaN	1	0	Median	118200000	61061000	57136000	0	0	0	19625000	11979000	7646100	64196000	30230000	33966000	34376000	18852000	15524000	8644	4701	8172	53759;53760;53761;53762	72447;72448	72448			2	
DMLLANK	1	Unmodified	803.42112	0.42112454	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	34.299	33.696	2	0.0015501	30024	160511_QHF_FH_JSI11i_1	133.95	94.19			3.0623	3.2579	153.47	8	8	Median	1.2603	1.0409	244.54	2	2	Median	3.423	3.9881	33.778	2	2	Median	2.3168	2.2577	57.046	2	2	Median	0.62264	0.66522	250.06	2	2	Median	4178800000	1422400000	2756500000	556210000	254850000	301360000	1452000000	382040000	1070000000	1637100000	474790000	1162400000	533480000	310690000	222780000	8645	837	8173	53763;53764;53765;53766;53767;53768;53769;53770	72449;72450;72451;72452;72453;72454;72455;72456	72449			8	
DMLLANKVPAAAR	1	Acetyl (K);Oxidation (M)	1426.7602	0.76023401	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	1	0	1	1			By MS/MS		14	0							1					1		68.124	57.101	2	0.0025896	31630	160513_QHF_FH_JSI11Kac_4	75.294	71.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2316700	2316700	0	0	0	0	0	0	0	2316700	2316700	0	0	0	0	8646	837	8174	53771	72457	72457	487	355	1	
DMLLANPHELSLLK	1	Unmodified	1592.8596	0.8596137	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.298	85.627	3	0.0014261	74007	160511_QHF_FH_JSI12i_2	61.409	47.056			0.57316	0.57082	18.136	4	4	Median	0.56021	0.49245	NaN	1	1	Median	0.40645	0.50155	NaN	1	1	Median	0.70582	0.7047	NaN	1	1	Median	0.5864	0.64964	NaN	1	1	Median	79482000	44367000	35115000	12887000	6672100	6215100	19094000	13769000	5324300	26896000	12205000	14691000	20605000	11721000	8884300	8647	2968	8175	53772;53773;53774;53775	72458;72459;72460;72461	72458			4	
DMLQAASHYR	0	Unmodified	1190.5502	0.55024123	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	37.349	36.405	2	1.9714E-07	31145	160511_QHF_FH_JSI11i_2	117.31	74.093			0.85238	0.86026	7.3297	3	0	Plateau	1.174	0.98897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85238	0.86026	NaN	1	0	Median	0.895	0.95924	NaN	1	0	Median	154630000	70248000	84387000	40206000	16890000	23316000	0	0	0	69760000	34810000	34950000	44669000	18548000	26121000	8648	3765	8176	53776;53777;53778	72462;72463;72464	72464			2	
DMLTDEITK	1	Unmodified	1064.506	0.50597638	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				54.738	53.561	2	0.00017327	47587	160511_QHF_FH_JSI9i_1	87.308	63.153			1.1825	0.95649	NaN	1	0	Median	1.1825	0.95649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50916000	15226000	35689000	50916000	15226000	35689000	0	0	0	0	0	0	0	0	0	8649	2993	8177	53779	72465;72466	72466			2	
DMLTQTYDLIER	0	Unmodified	1496.7181	0.71809442	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		89.222	88.863	2	0.00063391	80960	160511_QHF_FH_JSI11i_1	81.865	64.429			1.6238	1.5644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6238	1.5644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48069000	15005000	33064000	0	0	0	0	0	0	48069000	15005000	33064000	0	0	0	8650	2305	8178	53780	72467	72467			1	
DMMFQLLR	0	Unmodified	1052.5147	0.51470735	2150	Q00534	CDK6	Cyclin-dependent kinase 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	87.576	86.805	2	0.0033892	75005	160511_QHF_FH_JSI12i_2	78.616	45.258			1.0249	1.0304	47.998	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1759	1.1461	46.097	2	2	Median	0.80157	0.83189	61.319	2	2	Median	28884000	14108000	14776000	0	0	0	0	0	0	17719000	7996400	9722600	11165000	6111300	5053400	8651	2150	8179	53781;53782;53783;53784;53785	72468;72469;72470;72471;72472	72468			5	
DMNHTNSYGIIR	0	Unmodified	1419.6565	0.65649722	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.599	35.254	2	0.001801	29954	160511_QHF_FH_JSI12i_2	73.499	60.71			0.95468	1.0616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95468	1.0616	NaN	1	1	Median	20421000	13608000	6812200	0	0	0	0	0	0	0	0	0	20421000	13608000	6812200	8652	3101	8180	53786	72473	72473			1	
DMNLTLEPEIMPAATDNR	0	Unmodified	2029.9449	0.94487625	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	88.546	88.128	2	0.00039191	80296	160511_QHF_FH_JSI11i_1	66.989	44.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8653	2203	8181	53787;53788	72474;72475	72474			2	
DMNQFGEGEQAK	1	Unmodified	1352.5667	0.56667916	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	3	4	3	31.861	29.018	2	3.6073E-11	26281	160511_QHF_FH_JSI12i_1	197.21	187.41			0.58682	0.61176	90.961	11	11	Median	1.0595	0.8778	112.81	2	2	Median	0.8	0.94608	139.05	2	2	Median	0.83807	0.80978	99.052	4	4	Median	0.58682	0.61176	99.798	3	3	Median	1435300000	740020000	695260000	366560000	175960000	190600000	433250000	242250000	191000000	256230000	120730000	135510000	379230000	201090000	178140000	8654	2147	8182	53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800	72476;72477;72478;72479;72480;72481;72482;72483;72484;72485;72486;72487;72488;72489	72481			14	
DMNQFGEGEQAK	1	Oxidation (M)	1368.5616	0.56159378	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	3									1		2		29.859	29.288	2	0.00078514	26014	160511_QHF_FH_JSI11i_1	97.452	87.498			0.61185	0.51899	100.02	3	3	Median	0.61185	0.51899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2451	1.2192	123.07	2	2	Median	NaN	NaN	NaN	0	0	Median	84720000	48752000	35968000	29421000	22417000	7004400	0	0	0	55299000	26335000	28964000	0	0	0	8655	2147	8182	53801;53802;53803	72490;72491;72492	72490		1793	3	
DMNQVLDAYENK	1	Unmodified	1438.6398	0.6398441	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				3	2	3	3	68.805	66.021	2;3	1.1398E-16	59827	160511_QHF_FH_JSI11i_1	206.49	187.25			1.3862	1.4083	94.661	10	10	Median	0.87648	2.5607	146.36	3	3	Plateau	0.40542	0.47946	NaN	1	1	Median	1.2799	1.204	97.21	3	3	Median	1.5012	1.6473	79.01	3	3	Median	2407200000	1222900000	1184300000	753650000	396280000	357370000	405700000	270300000	135400000	733350000	361760000	371590000	514460000	194540000	319910000	8656	1226	8183	53804;53805;53806;53807;53808;53809;53810;53811;53812;53813;53814	72493;72494;72495;72496;72497;72498;72499;72500;72501;72502;72503;72504;72505;72506	72493			14	
DMPPAFIK	1	Unmodified	917.46807	0.46807473	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	17									5	4	3	5	58.975	58.27	2	0.0059236	52340	160511_QHF_FH_JSI9i_1	60.76	19.814			1.5563	1.6381	29.956	8	6	Median	2.2119	1.8853	36.134	3	3	Median	1.5144	1.7717	24.225	2	2	Median	1.4735	1.4096	34.388	2	1	Median	1.0188	1.0813	NaN	1	0	Median	353400000	148690000	204710000	104810000	37378000	67430000	86045000	37087000	48957000	112560000	52417000	60146000	49980000	21805000	28175000	8657	1139	8184	53815;53816;53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831	72507;72508;72509;72510;72511;72512;72513;72514;72515;72516;72517;72518;72519;72520;72521;72522;72523;72524;72525;72526;72527	72527			21	
DMPWLALPYK	1	Unmodified	1232.6264	0.62636629	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	99.572	99.447	2	0.0022653	90286	160511_QHF_FH_JSI12i_1	64.265	46.879			1.2737	1.2172	43.65	3	2	Median	NaN	NaN	NaN	0	0	Median	1.9932	2.2578	NaN	1	1	Median	1.2737	1.2172	NaN	1	1	Median	0.87308	0.97177	NaN	1	0	Median	47918000	22035000	25883000	0	0	0	22757000	8945900	13811000	9548600	4515800	5032800	15613000	8573500	7039400	8658	3038	8185	53832;53833;53834;53835	72528;72529;72530;72531	72530			3	
DMPYQPFSK	1	Unmodified	1111.5008	0.50083142	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	2	2	57.939	54.118	2	3.1741E-05	49351	160511_QHF_FH_JSI12i_1	101.64	91.657			1.1771	1.1989	15.627	6	2	Median	1.6604	1.3737	NaN	1	0	Median	0.95662	1.1296	NaN	1	0	Median	1.2985	1.2841	16.64	2	1	Median	1.0292	1.0864	20.868	2	1	Median	2122000000	1135600000	986400000	557350000	234980000	322370000	545370000	353250000	192120000	519420000	266350000	253070000	499870000	281030000	218840000	8659	282	8186	53836;53837;53838;53839;53840;53841	72532;72533;72534;72535;72536;72537;72538;72539;72540;72541	72535			10	
DMQGLSLDAASQPSK	1	Unmodified	1546.7297	0.72972174	4063	Q96EY5	MVB12A	Multivesicular body subunit 12A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	54.388	53.851	2	0.00010963	48913	160511_QHF_FH_JSI12i_1	111.79	101.79			0.73726	0.72969	1.5861	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78593	0.73792	NaN	1	1	Median	0.6916	0.72155	NaN	1	1	Median	126930000	82320000	44612000	0	0	0	0	0	0	63678000	40916000	22762000	63254000	41404000	21849000	8660	4063	8187	53842;53843	72542;72543	72543			2	
DMQPSMESDMALVK	1	Unmodified	1580.6885	0.68845055	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	67.173	66.588	2	5.7336E-10	60200	160511_QHF_FH_JSI10i_1	109.24	98.311			1.2402	1.1518	16.362	4	1	Median	1.2753	1.0473	NaN	1	0	Median	0.87312	1.043	NaN	1	1	Median	1.5224	1.4633	NaN	1	0	Median	1.206	1.2666	NaN	1	0	Median	1148200000	531990000	616240000	314850000	114960000	199890000	225050000	125960000	99088000	307660000	142820000	164840000	300670000	148250000	152430000	8661	1298	8188	53844;53845;53846;53847;53848	72544;72545;72546;72547;72548;72549;72550;72551	72549			8	
DMQYVQR	0	Unmodified	938.428	0.42800083	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.782	21.279	2	0.014002	18661	160511_QHF_FH_JSI12i_1	58.246	43.833			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8662	3947	8189	53849	72552	72552			1	
DMREMKNLLSKLR	2	2 Acetyl (K);Oxidation (M)	1732.8964	0.89640991	3066	Q6MZT1	RGS7BP	Regulator of G-protein signaling 7-binding protein	yes	yes	2	0	1	3				By MS/MS	12	0					1								1	67.481	58.02	3	0.0055472	25662	160513_QHF_FH_JSI12Kac_2	48.625	41.394			0.25031	0.26242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25031	0.26242	NaN	1	0	Median	11150000	8637600	2512400	0	0	0	0	0	0	0	0	0	11150000	8637600	2512400	8663	3066	8190	53850	72553	72553	2757;2758	2184	1	
DMSALVAAR	0	Unmodified	932.47495	0.47495102	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.5	6.02	3	1					2			2		3	1	54.599	46.924	2	2.3066E-05	43636	160511_QHF_FH_JSI12i_1	101.6	58.601			1.6588	1.4635	74.72	3	3	Plateau	1.6588	1.4635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72056	0.72616	88.835	2	2	Median	NaN	NaN	NaN	0	0	Median	33565000	12761000	20804000	27688000	9382900	18305000	0	0	0	5876700	3378200	2498500	0	0	0	8664	1273	8191	53851;53852;53853;53854;53855;53856	72554;72555;72556;72557;72558;72559	72555			6	
DMSGHYQNALYLGDVSER	0	Unmodified	2053.9164	0.91635331	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								3	3	2	2	62.035	61.125	2;3	1.8305E-08	53267	160511_QHF_FH_JSI11i_2	147.68	135.12			1.1108	1.1874	38.096	8	2	Median	1.7816	1.4989	26.827	2	1	Median	1.4144	1.7352	40.431	2	1	Median	0.94571	0.94712	25.865	2	0	Median	0.80915	0.88232	20.637	2	0	Median	713960000	318970000	394990000	135220000	56051000	79167000	183270000	73813000	109460000	271620000	129840000	141780000	123850000	59272000	64578000	8665	1805	8192	53857;53858;53859;53860;53861;53862;53863;53864;53865;53866	72560;72561;72562;72563;72564;72565;72566;72567;72568;72569;72570;72571;72572;72573;72574;72575	72571			16	
DMSGTMGFNEFK	1	Unmodified	1362.5584	0.55842266	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.489	66.903	2	1.7786E-05	60579	160511_QHF_FH_JSI10i_1	116.77	100.88			1.0509	1.2411	35.202	4	4	Linear	1.471	1.1946	NaN	1	1	Median	2.1117	2.461	NaN	1	1	Median	1.3297	1.2895	NaN	1	1	Median	1.1226	1.1852	NaN	1	1	Median	792540000	280630000	511920000	182110000	64578000	117530000	196560000	53622000	142940000	209290000	71879000	137410000	204580000	90548000	114030000	8666	1361	8193	53867;53868;53869;53870	72576;72577;72578;72579	72578			4	
DMSIIQWK	1	Unmodified	1019.511	0.51100218	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	72.616	72.282	2	0.0014339	65657	160511_QHF_FH_JSI11i_1	89.55	63.813			0.74935	0.75166	72.86	5	4	Median	NaN	NaN	NaN	0	0	Median	0.52131	0.61003	101.89	2	2	Median	0.57485	0.5563	101.23	2	1	Median	0.74935	0.75166	NaN	1	1	Median	191910000	118230000	73672000	0	0	0	90183000	59355000	30828000	74411000	41810000	32601000	27312000	17070000	10243000	8667	4848	8194	53871;53872;53873;53874;53875	72580;72581;72582;72583;72584	72580			5	
DMSMLEER	0	Unmodified	1009.4209	0.42086654	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.065	44.42	2	0.0079495	40382	160511_QHF_FH_JSI12i_1	67.993	57.578			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16923000	0	16923000	0	0	0	0	0	0	0	0	0	16923000	0	16923000	8668	2485	8195	53876	72585	72585			1	
DMSPLSETEMALGK	1	Unmodified	1507.6898	0.68983076	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	79.558	79.086	2	2.9666E-21	71912	160511_QHF_FH_JSI12i_1	171.62	151.31			0.99554	0.94602	13.605	4	0	Median	1.1561	0.95663	NaN	1	0	Median	0.66872	0.77553	NaN	1	0	Median	0.95785	0.93553	NaN	1	0	Median	1.0347	1.0776	NaN	1	0	Median	686530000	392390000	294130000	197660000	110770000	86885000	150910000	91720000	59187000	171260000	88528000	82730000	166710000	101370000	65331000	8669	1298	8196	53877;53878;53879;53880	72586;72587;72588;72589;72590;72591;72592;72593;72594	72589			9	
DMSTWVFGAER	0	Unmodified	1297.5761	0.57612163	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.789	79.637	2	0.015111	68758	160511_QHF_FH_JSI12i_2	51.436	39.588			0.78491	0.83182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78491	0.83182	NaN	1	1	Median	7504300	4450600	3053700	0	0	0	0	0	0	0	0	0	7504300	4450600	3053700	8670	2647	8197	53881	72595	72595			1	
DMSVVEGGLR	0	Unmodified	1061.5175	0.51754412	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				52.264	51.064	2	0.0042429	45400	160511_QHF_FH_JSI9i_1	76.827	52.672			4.3399	3.7266	NaN	1	1	Median	4.3399	3.7266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37006000	8268800	28737000	37006000	8268800	28737000	0	0	0	0	0	0	0	0	0	8671	2677	8198	53882	72596;72597	72597			2	
DMTLIHGYFGSTQGLSDELAK	1	Unmodified	2282.0889	0.088897947	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.554	92.107	3	5.9147E-05	80995	160511_QHF_FH_JSI11i_2	61.276	53.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12015000	12015000	0	0	0	0	0	0	0	12015000	12015000	0	0	0	0	8672	433	8199	53883	72598;72599	72599			2	
DMTLPPETNVILTK	1	Unmodified	1570.8276	0.82764487	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	82.679	82.151	2;3	3.476E-06	74808	160511_QHF_FH_JSI12i_1	128.08	119.86			0.89359	0.89211	21.934	8	7	Median	1.1227	0.91748	31.914	3	3	Median	0.86066	0.98674	18.225	2	1	Median	0.94656	0.94513	NaN	1	1	Median	0.76824	0.77352	13.734	2	2	Median	611110000	323100000	288020000	223270000	109730000	113540000	124480000	63001000	61478000	131470000	72913000	58559000	131900000	77455000	54443000	8673	1298	8200	53884;53885;53886;53887;53888;53889;53890;53891;53892	72600;72601;72602;72603;72604;72605;72606;72607;72608;72609;72610;72611;72612;72613;72614;72615;72616;72617	72605			18	
DMTMFVTASK	1	Unmodified	1129.5148	0.51476693	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.5	8					2	1			3	3	3	2	61.434	57.591	2	6.0199E-07	55826	160511_QHF_FH_JSI9i_1	120.99	112.13			1.686	1.9852	132.21	11	10	Median	1.3564	0.47481	124.16	3	2	Median	1.686	1.9852	150.88	3	3	Median	2.9028	2.8564	159.22	3	3	Median	1.2296	1.3071	175.43	2	2	Median	2847400000	1209100000	1638400000	677900000	318160000	359750000	713840000	316710000	397140000	819640000	280250000	539390000	636040000	293960000	342080000	8674	2391	8201	53893;53894;53895;53896;53897;53898;53899;53900;53901;53902;53903	72618;72619;72620;72621;72622;72623;72624;72625;72626;72627;72628;72629;72630;72631;72632	72628			15	
DMTMFVTASK	1	Oxidation (M)	1145.5097	0.50968155	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	1	0		By MS/MS			13	0						4					4			61.405	51.953	2	0.0011734	26742	160513_QHF_FH_JSI10Kac_3	88.496	58.686			0.92787	1.0673	72.579	4	4	Median	NaN	NaN	NaN	0	0	Median	0.92787	1.0673	72.579	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7323500	3528500	3795000	0	0	0	7323500	3528500	3795000	0	0	0	0	0	0	8675	2391	8201	53904;53905;53906;53907	72633;72634;72635;72636	72635		1941	4	
DMTSEQLDDILK	1	Unmodified	1406.6599	0.65991084	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.829	77.354	2	6.5538E-94	68666	160511_QHF_FH_JSI9i_1	266.24	245.37			0.85476	1.0065	11.522	4	0	Linear	1.1048	0.91237	NaN	1	0	Median	0.81876	0.96845	NaN	1	0	Median	1.2041	1.1914	NaN	1	0	Median	1.0078	1.0461	NaN	1	0	Median	1986300000	1019500000	966790000	480650000	224830000	255820000	553910000	300270000	253630000	434270000	219040000	215230000	517460000	275340000	242120000	8676	821	8202	53908;53909;53910;53911	72637;72638;72639;72640;72641;72642;72643;72644;72645;72646;72647	72645			11	
DMTSEQLDDILK	1	Oxidation (M)	1422.6548	0.65482546	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	67.434	66.678	2	0.00032153	60619	160511_QHF_FH_JSI12i_1	79.659	62.821			1.2741	1.1137	21.694	4	3	Median	1.1774	0.9517	16.949	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2145	1.156	NaN	1	1	Median	1.3845	1.4282	NaN	1	0	Median	179710000	86529000	93184000	79048000	42199000	36849000	0	0	0	48967000	18439000	30528000	51698000	25891000	25808000	8677	821	8202	53912;53913;53914;53915	72648;72649;72650;72651;72652	72650		346	5	
DMTVKYDSR	1	Acetyl (K);Oxidation (M)	1171.5179	0.51793805	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		24.711	17.103	2	0.01704	10759	160513_QHF_FH_JSI11Kac_3	62.463	58.326			0.19121	0.18096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19121	0.18096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2478500	2009000	469520	0	0	0	0	0	0	2478500	2009000	469520	0	0	0	8678	4915	8203	53916	72653	72653	3264	2556	1	
DMTVPILVSKPPVFTGK	2	Unmodified	1828.0168	0.016842623	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	91.024	90.958	3	0.0010506	78946	160511_QHF_FH_JSI12i_3	56.407	46.877			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8679	991	8204	53917	72654	72654			1	
DMVDPVTGDK	1	Unmodified	1075.4856	0.48557529	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	36.187	35.764	2	0.0060402	32125	160511_QHF_FH_JSI11i_1	62.823	41.295			0.30415	0.30595	38.755	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41444	0.40241	NaN	1	1	Median	0.2232	0.23262	NaN	1	1	Median	304370000	194250000	110120000	0	0	0	0	0	0	167980000	94552000	73424000	136390000	99698000	36696000	8680	5554	8205	53918;53919	72655;72656	72655			2	
DMVGIAQTGSGK	1	Unmodified	1162.5652	0.56522259	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	35.629	35.111	2	3.6415E-05	31532	160511_QHF_FH_JSI11i_1	112.83	99.567			1.7432	1.4174	85.046	7	7	Median	1.7432	1.4174	NaN	1	1	Median	0.85761	1.033	121.6	2	2	Median	1.2046	1.1694	135.51	2	2	Median	0.91065	0.94594	94.853	2	2	Median	4322000000	2224400000	2097600000	652660000	338620000	314040000	1217000000	715080000	501890000	1356300000	637170000	719160000	1096100000	533540000	562550000	8681	3893	8206	53920;53921;53922;53923;53924;53925;53926	72657;72658;72659;72660;72661;72662;72663;72664	72658			8	
DMVGIAQTGSGK	1	Oxidation (M)	1178.5601	0.56013721	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	0	By MS/MS				1	0	2									2				36.266	35.034	2	0.00053342	30919	160511_QHF_FH_JSI9i_1	101.93	88.892			1.0089	0.82565	153.31	2	2	Median	1.0089	0.82565	153.31	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145200000	79704000	65493000	145200000	79704000	65493000	0	0	0	0	0	0	0	0	0	8682	3893	8206	53927;53928	72665;72666	72666		2327	2	
DMVGQVAITR	0	Unmodified	1088.5648	0.56482866	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.567	44.894	2	7.4996E-05	40325	160511_QHF_FH_JSI10i_1	88.267	79.404			0.67519	0.77822	15.278	4	0	Linear	0.66874	0.55352	NaN	1	0	Median	0.64805	0.74741	NaN	1	0	Median	0.79859	0.77863	NaN	1	0	Median	0.6817	0.70503	NaN	1	0	Median	302780000	159480000	143300000	57883000	28062000	29822000	85133000	46416000	38718000	86512000	45779000	40733000	73254000	39229000	34025000	8683	2185	8207	53929;53930;53931;53932	72667;72668;72669;72670;72671	72670			5	
DMVHKELHR	1	Acetyl (K)	1205.5975	0.59752577	640	O95070	YIF1A	Protein YIF1A	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		31.903	22.621	2;3	0.0063354	12929	160513_QHF_FH_JSI11Kac_6	46.796	39.147			0.28787	0.27672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28787	0.27672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20609000	14123000	6485600	0	0	0	0	0	0	20609000	14123000	6485600	0	0	0	8684	640	8208	53933;53934	72672;72673	72672	319		2	
DMVKFGGSGR	1	Acetyl (K)	1094.5179	0.51787847	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		49.22	38.705	2	0.038995	22749	160513_QHF_FH_JSI11Kac_4	52.49	40.134			0.10706	0.10753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10706	0.10753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3547400	3095300	452060	0	0	0	0	0	0	3547400	3095300	452060	0	0	0	8685	1273	8209	53935	72674	72674			1	
DMVQDLLDFK	1	Unmodified	1222.5904	0.59037471	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.2	101.09	2	1.9414E-25	91791	160511_QHF_FH_JSI10i_1	186.78	165.88			1.1207	1.0239	9.3506	4	0	Linear	1.5126	1.2213	NaN	1	0	Median	0.83375	0.98674	NaN	1	0	Median	1.1236	1.105	NaN	1	0	Median	1.1178	1.1774	NaN	1	0	Median	697520000	356230000	341290000	49534000	23648000	25886000	299600000	183070000	116530000	204080000	74999000	129080000	144300000	74507000	69795000	8686	2456	8210	53936;53937;53938;53939	72675;72676;72677;72678;72679;72680;72681	72679			7	
DMVVDIQR	0	Unmodified	974.48552	0.48551571	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	46.279	43.871	2	0.00013311	39060	160511_QHF_FH_JSI9i_1	126.28	98.171			0.85704	0.90314	19.163	5	1	Median	1.2558	1.0345	NaN	1	0	Median	0.6773	0.79701	31.695	2	1	Median	0.91329	0.90314	NaN	1	0	Median	0.82453	0.87769	NaN	1	0	Median	1310100000	685320000	624740000	218630000	106740000	111890000	338200000	182450000	155750000	417840000	223790000	194050000	335390000	172340000	163050000	8687	5497	8211	53940;53941;53942;53943;53944	72682;72683;72684;72685;72686;72687;72688;72689;72690	72689			9	
DMVVDIQRR	0	Unmodified	1130.5866	0.58662674	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	2	1	2	36.108	35.265	2;3	1.5887E-05	29992	160511_QHF_FH_JSI12i_3	107.66	90.279			0.94832	0.96285	21.353	7	2	Median	1.0604	0.89044	27.514	2	1	Median	0.86229	1.0655	14.757	2	1	Median	0.94832	0.96285	NaN	1	0	Median	0.83989	0.9033	36.897	2	0	Median	626070000	322170000	303900000	163870000	78509000	85360000	199110000	101650000	97453000	98300000	41228000	57072000	164800000	100780000	64016000	8688	5497	8212	53945;53946;53947;53948;53949;53950;53951	72691;72692;72693;72694;72695;72696;72697;72698	72698			8	
DMVVGFANLGILHVTK	1	Unmodified	1712.9284	0.92836197	1166	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				89.827	81.159	3	2.1825E-11	45212	160513_QHF_FH_JSI9Kac_6	125.18	114.12			1.0943	0.92244	NaN	1	0	Median	1.0943	0.92244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31521000	10736000	20786000	31521000	10736000	20786000	0	0	0	0	0	0	0	0	0	8689	1166	8213	53952	72699;72700	72699			2	
DMVVNLFHELEK	1	Unmodified	1472.7334	0.73335055	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	99.485	99.276	3	0.00010009	85378	160511_QHF_FH_JSI12i_2	86.772	73.572			1.1357	1.1414	51.79	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81389	0.79137	NaN	1	1	Median	1.5849	1.6461	NaN	1	1	Median	14377000	5784700	8592700	0	0	0	0	0	0	8902200	4549100	4353100	5475200	1235500	4239600	8690	5229	8214	53953;53954	72701;72702	72701			2	
DMYEQFQNIMK	1	Unmodified	1445.6319	0.63192195	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.522	81.055	2	6.0164E-23	73581	160511_QHF_FH_JSI10i_1	169.44	155.32			1.1083	1.1034	8.5604	4	0	Median	1.1853	0.96181	NaN	1	0	Median	0.96689	1.1628	NaN	1	0	Median	1.1752	1.1404	NaN	1	0	Median	1.0453	1.0677	NaN	1	0	Median	303580000	149140000	154440000	59011000	28204000	30806000	81773000	48803000	32971000	76489000	31839000	44650000	86306000	40290000	46016000	8691	1929	8215	53955;53956;53957;53958	72703;72704;72705;72706;72707;72708;72709;72710	72707			8	
DMYGDDLEAR	0	Unmodified	1183.4816	0.48155254	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	37.725	37.112	2	0.042351	33503	160511_QHF_FH_JSI12i_1	52.49	45.594			1.1153	1.13	20.766	4	0	Median	2.044	1.6417	NaN	1	0	Median	0.90113	1.0612	NaN	1	0	Median	1.2204	1.2031	NaN	1	0	Median	1.0193	1.0533	NaN	1	0	Median	316350000	156580000	159770000	59638000	20185000	39453000	89778000	52201000	37577000	94227000	42461000	51766000	72707000	41734000	30973000	8692	2443	8216	53959;53960;53961;53962	72711	72711			0	
DMYLIPLGATDK	1	Unmodified	1335.6744	0.67443869	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			84.88	84.393	2	0.00061378	75040	160511_QHF_FH_JSI9i_1	82.417	70.823			0.94032	0.92058	10.263	2	2	Median	1.0148	0.85614	NaN	1	1	Median	0.87133	0.98988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54562000	30663000	23899000	30580000	16338000	14242000	23983000	14325000	9657100	0	0	0	0	0	0	8693	3849	8217	53963;53964	72712;72713	72713			2	
DMYNDTLNGSTEK	1	Unmodified	1486.6246	0.62458797	4200	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		34.35	34.104	2	3.3545E-06	30565	160511_QHF_FH_JSI11i_1	122.7	96.761			1.1925	1.1359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1925	1.1359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30385000	16222000	14163000	0	0	0	0	0	0	30385000	16222000	14163000	0	0	0	8694	4200	8218	53965	72714	72714			1	
DMYNIIR	0	Unmodified	923.45349	0.4534873	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	1	3	2	53.47	52.718	2	0.0041464	47930	160511_QHF_FH_JSI12i_1	99.919	35.143			1.0954	1.0417	56.355	8	5	Median	1.8187	1.4955	21.183	2	1	Median	0.67672	0.78284	NaN	1	0	Median	0.93831	0.90817	85.848	3	3	Plateau	0.67605	0.74019	18.37	2	1	Median	523200000	249700000	273490000	90912000	35942000	54971000	99507000	52496000	47011000	222290000	106470000	115820000	110490000	54794000	55692000	8695	1810	8219	53966;53967;53968;53969;53970;53971;53972;53973	72715;72716;72717;72718;72719;72720;72721;72722;72723;72724	72719			10	
DNAGAATEEFIK	1	Unmodified	1264.5935	0.59354583	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.074	44.394	2	9.5569E-32	39937	160511_QHF_FH_JSI10i_1	194.17	157.47			0.59587	0.91224	33.616	3	2	Plateau	0.59587	0.49598	NaN	1	1	Median	0.79605	0.92301	NaN	1	0	Median	0.56501	0.54143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	466810000	258590000	208220000	116640000	73260000	43382000	199250000	90445000	108800000	150920000	94884000	56039000	0	0	0	8696	944	8220	53974;53975;53976	72725;72726;72727	72726			3	
DNAKYVK	2	Acetyl (K)	878.44978	0.44978213	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			19.9	12.502	2	0.04075	8160	160513_QHF_FH_JSI10Kac_3	69.998	48.452			0.30228	0.36096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30228	0.36096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2643800	2349000	294830	0	0	0	2643800	2349000	294830	0	0	0	0	0	0	8697	2674	8221	53977	72728	72728			1	
DNALLAQLIQDK	1	Unmodified	1340.73	0.72997974	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.33	0.471	2	1								1	2			90.067	89.615	2	2.6869E-05	81288	160511_QHF_FH_JSI10i_1	134.38	117.36			4.0435	3.9171	1.1081	2	2	Median	4.8272	3.8865	NaN	1	1	Median	3.387	3.9479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106060000	40517000	65540000	40751000	7301000	33450000	65305000	33216000	32090000	0	0	0	0	0	0	8698	1962	8222	53978;53979;53980	72729;72730;72731	72729			3	
DNALLSAIEESR	0	Unmodified	1316.6572	0.65720872	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			75.09	74.602	2	0.0097224	67672	160511_QHF_FH_JSI10i_1	57.802	29.789			0.66665	0.67618	77.078	2	1	Median	1.3172	1.1662	NaN	1	0	Median	0.3374	0.39207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97821000	63350000	34471000	48444000	25495000	22949000	49377000	37855000	11521000	0	0	0	0	0	0	8699	3503	8223	53981;53982	72732;72733	72732			2	
DNALLSAIEESRK	1	Unmodified	1444.7522	0.75217174	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		14	4							4	4	6	4	65.079	64.372	2;3	2.7094E-07	56939	160511_QHF_FH_JSI10i_2	88.706	69.648			0.72991	0.66168	94.167	17	17	Median	1.0477	0.91071	73.564	4	4	Median	0.48837	0.59554	91.126	3	3	Median	0.64305	0.58952	125.35	6	6	Median	0.65946	0.72493	96.982	4	4	Median	1065800000	570800000	494990000	205400000	88381000	117020000	178450000	98507000	79946000	498490000	266640000	231860000	183440000	117280000	66162000	8700	3503	8224	53983;53984;53985;53986;53987;53988;53989;53990;53991;53992;53993;53994;53995;53996;53997;53998;53999;54000	72734;72735;72736;72737;72738;72739;72740;72741;72742;72743;72744;72745;72746;72747;72748;72749;72750;72751	72750			18	
DNALTLLIK	1	Unmodified	999.59645	0.59644637	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.5	6.5	3						3				2	2	2	82.457	74.412	2	0.0022106	72315	160511_QHF_FH_JSI11i_1	66.621	47.891			0.81538	0.89523	20.369	4	1	Median	NaN	NaN	NaN	0	0	Median	0.83277	0.98614	NaN	1	0	Median	0.69141	0.66741	NaN	1	0	Median	0.87963	0.92205	17.854	2	1	Median	62181000	41622000	20559000	0	0	0	2896800	1662900	1233900	1929300	1069300	860010	57355000	38889000	18465000	8701	4704	8225	54001;54002;54003;54004;54005;54006	72752;72753;72754;72755;72756	72752			5	
DNAMLEYLK	1	Unmodified	1095.527	0.52704617	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	2	3	62.801	59.47	2	6.5762E-08	59074	160511_QHF_FH_JSI9i_1	148.52	121.56			0.38263	0.41402	92.641	9	9	Median	0.41411	0.33425	30.467	2	2	Median	0.73143	0.86675	136.01	2	2	Median	0.80926	0.77893	109.78	2	2	Median	0.38263	0.41402	112.74	3	3	Median	6239400000	3359900000	2879500000	953400000	419490000	533910000	1534500000	887130000	647330000	1943200000	1117400000	825720000	1808400000	935880000	872500000	8702	1073	8226	54007;54008;54009;54010;54011;54012;54013;54014;54015	72757;72758;72759;72760;72761;72762;72763;72764;72765;72766	72765			10	
DNDFLNEGQK	1	Unmodified	1178.5204	0.52038089	2088	P78356	PIP4K2B	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.96	32.721	2	0.0067149	29336	160511_QHF_FH_JSI11i_1	62.005	0			0.63497	0.60509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63497	0.60509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30174000	15827000	14347000	0	0	0	0	0	0	30174000	15827000	14347000	0	0	0	8703	2088	8227	54016	72767;72768	72768			2	
DNDLISLPK	1	Unmodified	1013.5393	0.53932542	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	59.57	58.929	2	0.00047696	53424	160511_QHF_FH_JSI10i_1	84.213	43.183			1.3158	0.85412	25.241	3	3	Plateau	1.02	0.8439	NaN	1	1	Median	0.7057	0.85412	NaN	1	1	Median	1.3451	1.3144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	390660000	143140000	247520000	88900000	46741000	42159000	80402000	47925000	32476000	221360000	48476000	172880000	0	0	0	8704	2668	8228	54017;54018;54019;54020;54021;54022	72769;72770;72771;72772;72773;72774	72773			6	
DNDSLAAR	0	Unmodified	860.39881	0.39880919	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.0234	8.6605	2	0.0067638	6525	160511_QHF_FH_JSI10i_1	61.582	19.186			1.0141	1.003	17.262	4	0	Median	1.0856	0.89967	NaN	1	0	Median	0.83614	0.9957	NaN	1	0	Median	1.3856	1.3448	NaN	1	0	Median	0.94736	1.0103	NaN	1	0	Median	1095100000	503020000	592060000	160370000	77369000	82999000	297140000	152390000	144760000	290170000	137240000	152930000	347410000	136030000	211380000	8705	1837	8229	54023;54024;54025;54026	72775;72776;72777;72778;72779;72780;72781;72782	72780			8	
DNEDAFYNSQK	1	Unmodified	1329.5473	0.54732392	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	25.308	24.769	2	9.1641E-05	22021	160511_QHF_FH_JSI12i_1	88.596	85.864			1.0603	1.0849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0603	1.0849	NaN	1	0	Median	26437000	11920000	14517000	0	0	0	0	0	0	0	0	0	26437000	11920000	14517000	8706	413	8230	54027;54028	72783;72784	72784			2	
DNEEETTDDPRK	1	Unmodified	1447.6063	0.60629536	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	2									1			1	7.7624	7.2651	2	0.0003356	4752	160511_QHF_FH_JSI9i_1	72.29	56.037			1.3413	1.2449	13.828	2	0	Median	1.3838	1.1289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3001	1.3728	NaN	1	0	Median	85743000	33100000	52644000	48013000	14967000	33046000	0	0	0	0	0	0	37730000	18133000	19597000	8707	4271	8231	54029;54030	72785	72785			1	
DNEGSWFR	0	Unmodified	1009.4254	0.42535829	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	41.292	40.547	2	0.0013728	36677	160511_QHF_FH_JSI12i_1	90.37	60.563			0.8651	1.013	15.591	3	0	Plateau	1.5661	1.2766	NaN	1	0	Median	0.8651	1.013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92998	0.94881	NaN	1	0	Median	228810000	120150000	108650000	52237000	26608000	25628000	92665000	52401000	40263000	0	0	0	83905000	41143000	42762000	8708	4336	8232	54031;54032;54033	72786;72787;72788	72786			3	
DNEQALYELVK	1	Unmodified	1320.6561	0.65614609	3496	Q8N108	MIER1	Mesoderm induction early response protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.381	69.836	2	3.7119E-06	63649	160511_QHF_FH_JSI12i_1	116.77	105.61			0.94176	0.71426	14.845	4	4	Linear	1.1495	0.93411	NaN	1	1	Median	0.60495	0.71593	NaN	1	1	Median	0.93304	0.89866	NaN	1	1	Median	0.95057	1.0122	NaN	1	1	Median	173650000	89866000	83787000	35245000	18630000	16615000	52915000	32634000	20281000	48049000	21293000	26756000	37443000	17308000	20135000	8709	3496	8233	54034;54035;54036;54037	72789;72790;72791;72792	72790			4	
DNETIPCTR	0	Unmodified	1104.487	0.48697227	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.6	18.48	2	0.0054802	15750	160511_QHF_FH_JSI11i_1	64.04	57.59			0.4909	0.47638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4909	0.47638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18180000	12798000	5382200	0	0	0	0	0	0	18180000	12798000	5382200	0	0	0	8710	3306	8234	54038	72793	72793			1	
DNFDEMDTSR	0	Unmodified	1228.4666	0.46663076	1223	P23258	TUBG1	Tubulin gamma-1 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.559	27.97	2	4.0268E-05	24387	160511_QHF_FH_JSI9i_1	94.804	91.232			1.07	1.0512	6.4538	4	0	Median	1.1799	0.96976	NaN	1	0	Median	0.95872	1.1354	NaN	1	0	Median	1.129	1.0571	NaN	1	0	Median	1.0141	1.0453	NaN	1	0	Median	224820000	114630000	110190000	43422000	22142000	21279000	61963000	32724000	29238000	67185000	32635000	34550000	52248000	27126000	25122000	8711	1223	8235	54039;54040;54041;54042	72794;72795;72796;72797;72798;72799;72800	72800			6	
DNFGFIETANHDK	1	Unmodified	1506.6739	0.67392142	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								3	5	3	3	51.806	50.976	2;3	1.1449E-40	46231	160511_QHF_FH_JSI11i_1	181.66	151.1			1.0135	1.0329	21.284	13	5	Median	1.2007	1.0329	15.495	3	1	Median	0.88123	1.0995	29.296	5	3	Median	1.2039	1.2056	28.593	2	1	Median	1.0135	0.97972	7.5865	3	0	Plateau	1168300000	588530000	579790000	199580000	90596000	108980000	439550000	236170000	203370000	219170000	90093000	129070000	310030000	171670000	138360000	8712	543	8236	54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056	72801;72802;72803;72804;72805;72806;72807;72808;72809;72810;72811;72812;72813;72814;72815	72802			15	
DNFHGLAIFLDTYPNDETTER	0	Unmodified	2467.1292	0.12918286	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	1	3	3	3	95.312	93.96	3	1.5793E-14	84241	160511_QHF_FH_JSI12i_3	98.703	90.515			1.2025	1.2427	19.289	9	6	Median	2.5272	2.1399	NaN	1	1	Median	0.99135	1.2391	11.774	3	3	Median	1.2506	1.2171	5.4995	2	1	Median	1.2025	1.1943	3.8618	3	1	Plateau	402590000	201860000	200730000	9696800	1587100	8109800	179380000	92966000	86417000	59806000	26423000	33382000	153710000	80882000	72824000	8713	2326	8237	54057;54058;54059;54060;54061;54062;54063;54064;54065;54066	72816;72817;72818;72819;72820;72821;72822;72823;72824;72825;72826;72827	72825			12	
DNFLEWR	0	Unmodified	978.45593	0.45593014	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.999	64.452	2	0.023517	56128	160511_QHF_FH_JSI11i_2	55.531	40.091			1.2782	1.3375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2782	1.3375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22275000	9234300	13041000	0	0	0	0	0	0	22275000	9234300	13041000	0	0	0	8714	4621	8238	54067	72828	72828			1	
DNFNFLHLNR	0	Unmodified	1288.6313	0.63126874	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							1	2	2	1	66.784	66.412	3	0.0024114	59067	160511_QHF_FH_JSI10i_2	42.336	32.331			1.2464	1.2032	40.525	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.48093	0.59589	NaN	1	1	Median	1.03	0.94323	NaN	1	0	Median	1.2838	1.3368	NaN	1	0	Median	96253000	43414000	52839000	0	0	0	14342000	8088100	6254000	35093000	15990000	19104000	46818000	19337000	27481000	8715	3133	8239	54068;54069;54070;54071;54072;54073	72829;72830;72831;72832;72833	72833			5	
DNFNVDEIFLK	1	Unmodified	1352.6612	0.66123147	3060	Q6IQ22	RAB12	Ras-related protein Rab-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	93.512	93.148	2	0.0015092	84722	160511_QHF_FH_JSI11i_1	74.841	65.06			0.75075	0.78248	19.004	4	1	Median	0.69377	0.5639	NaN	1	1	Median	0.76347	0.867	NaN	1	0	Median	0.85398	0.81424	NaN	1	0	Median	0.73825	0.75195	NaN	1	0	Median	81552000	44513000	37039000	10406000	6386700	4019400	25038000	14773000	10265000	21667000	10443000	11223000	24441000	12910000	11531000	8716	3060	8240	54074;54075;54076;54077	72834;72835;72836;72837;72838	72834			5	
DNFTLIPEGTNGTEER	0	Unmodified	1791.8275	0.82752153	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	63.642	63.053	2	5.3549E-15	57408	160511_QHF_FH_JSI12i_1	158.2	148.76			0.93458	1.0578	7.1989	5	2	Median	1.3071	1.0671	NaN	1	0	Median	0.90139	1.0578	NaN	1	0	Median	1.0111	0.98184	10.544	2	2	Median	0.93458	0.95733	NaN	1	0	Median	684000000	323180000	360820000	130810000	54447000	76366000	135200000	69704000	65493000	289920000	134630000	155300000	128070000	64399000	63669000	8717	2739	8241	54078;54079;54080;54081;54082	72839;72840;72841;72842;72843;72844;72845;72846	72842			8	
DNFWMTR	0	Unmodified	968.41744	0.41743614	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	51.603	50.778	2	0.010802	43336	160511_QHF_FH_JSI12i_2	73.26	52.106			0.84928	0.96985	11.145	8	0	Median	1.1921	0.99348	1.617	2	0	Median	0.84303	1.0225	1.0709	2	0	Median	0.91918	0.88935	10.466	2	0	Median	0.73695	0.80417	5.5559	2	0	Median	763810000	380840000	382970000	155370000	63582000	91787000	178670000	101080000	77590000	270880000	130960000	139920000	158890000	85219000	73670000	8718	1940	8242	54083;54084;54085;54086;54087;54088;54089;54090	72847;72848;72849;72850;72851;72852;72853;72854;72855;72856;72857;72858;72859	72849			13	
DNGDYPYFETSAK	1	Unmodified	1505.6311	0.63105355	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.983	48.563	2	5.3071E-05	43598	160511_QHF_FH_JSI10i_1	116.01	101.32			2.1925	2.3331	15.889	2	2	Median	NaN	NaN	NaN	0	0	Median	2.2361	2.6105	NaN	1	1	Median	2.1497	2.0851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	672670000	180470000	492200000	0	0	0	383890000	81874000	302010000	288780000	98592000	190190000	0	0	0	8719	1729	8243	54091;54092	72860;72861	72861			2	
DNGEFSHHDLAPALDTGTTEEDRLK	1	Unmodified	2767.2685	0.26852989	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	54.518	54.28	4	0.00018323	46478	160511_QHF_FH_JSI12i_3	42.863	41.879			0.91341	0.92702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91341	0.92702	NaN	1	0	Median	59995000	39000000	20995000	0	0	0	0	0	0	0	0	0	59995000	39000000	20995000	8720	1895	8244	54093	72862;72863	72862			2	
DNGNGTYSCSYVPR	0	Unmodified	1588.6576	0.65761943	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.383	32.995	2	1.1911E-05	29574	160511_QHF_FH_JSI10i_1	125.82	111.61			0.75832	0.90944	28.028	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75832	0.90944	NaN	1	0	Median	0.65434	0.63598	NaN	1	0	Median	1.0545	1.1052	NaN	1	0	Median	230200000	133490000	96712000	0	0	0	78254000	47165000	31090000	74934000	51465000	23469000	77013000	34860000	42153000	8721	1192	8245	54094;54095;54096	72864;72865;72866;72867	72866			4	
DNGVVPVVK	1	Unmodified	925.52328	0.52328142	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	1	2	3	40.077	35.856	2	0.00013453	31708	160511_QHF_FH_JSI9i_1	90.709	77.75			0.98148	0.98162	14.63	7	0	Median	1.2174	1.0104	NaN	1	0	Median	0.77756	0.90879	NaN	1	0	Median	1.0387	1.0199	5.4165	2	0	Median	0.68021	0.71346	21	3	0	Plateau	880380000	438260000	442110000	201790000	85991000	115800000	211860000	117160000	94698000	229680000	112360000	117320000	237050000	122750000	114300000	8722	5215	8246	54097;54098;54099;54100;54101;54102;54103	72868;72869;72870;72871;72872;72873;72874;72875;72876;72877	72875			10	
DNHFAIFIIPQGR	0	Unmodified	1526.7994	0.7993967	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	82.738	74.494	2;3	7.2485E-31	42106	160513_QHF_FH_JSI10Kac_6	168.69	144.3			1.1366	1.0882	9.1	8	2	Median	1.4264	1.2124	2.3796	2	1	Median	0.90405	1.0589	2.0742	2	1	Median	1.1366	1.0865	2.0026	2	0	Median	1.0919	1.1504	18.605	2	0	Median	816490000	377310000	439180000	175950000	80279000	95668000	289850000	127270000	162590000	208570000	98178000	110390000	142130000	71590000	70538000	8723	3560	8247	54104;54105;54106;54107;54108;54109;54110;54111;54112	72878;72879;72880;72881;72882;72883;72884;72885;72886;72887;72888;72889	72889			12	
DNHLLGTFDLTGIPPAPR	0	Unmodified	1933.0058	0.005760665	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.72	0.624	12	17	3							7	7	12	6	91.804	91.348	2;3	5.8065E-24	79606	160511_QHF_FH_JSI9i_2	102.57	88.264			1.0628	1.0994	18.133	22	8	Median	1.2818	1.0887	24.182	3	1	Plateau	0.8135	1.0084	17.6	5	1	Median	1.1622	1.1771	16.284	9	5	Median	1.0312	1.1804	19.085	5	1	Median	2613600000	1280800000	1332800000	382220000	160270000	221950000	625660000	341960000	283700000	869810000	423600000	446220000	735950000	355020000	380940000	8724	982	8248	54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138;54139;54140;54141;54142;54143;54144	72890;72891;72892;72893;72894;72895;72896;72897;72898;72899;72900;72901;72902;72903;72904;72905;72906;72907;72908;72909;72910;72911;72912;72913;72914;72915;72916;72917;72918;72919;72920;72921;72922;72923;72924;72925;72926;72927;72928;72929;72930;72931;72932;72933;72934;72935;72936;72937;72938;72939;72940;72941;72942;72943;72944;72945;72946;72947;72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958;72959;72960;72961;72962;72963;72964;72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978;72979	72943			90	
DNHLVHLPLTLILVNK	1	Unmodified	1838.0778	0.077803396	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	98.882	98.838	3	0.0020966	85113	160511_QHF_FH_JSI12i_3	55.755	50.071			0.64116	0.69734	69.926	3	3	Median	NaN	NaN	NaN	0	0	Median	0.53534	0.6345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1953	1.2462	82.107	2	2	Median	45767000	18722000	27046000	0	0	0	8596400	5895300	2701100	0	0	0	37171000	12826000	24344000	8725	4974	8249	54145;54146;54147	72980;72981;72982	72982			3	
DNIACVILTFK	1	Unmodified	1292.6799	0.67985842	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	97.686	97.447	2	0.00014479	83794	160511_QHF_FH_JSI12i_2	94.616	56.53			1.7248	1.6618	90.776	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7248	1.6618	NaN	1	1	Median	1.1649	1.2562	126.33	2	2	Median	31499000	14840000	16659000	0	0	0	0	0	0	14659000	6044500	8614400	16840000	8795400	8044400	8726	1000	8250	54148;54149;54150	72983;72984;72985	72983			3	
DNIAGEELELSK	1	Unmodified	1316.646	0.64597533	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.44	52.775	2	0.00024734	47958	160511_QHF_FH_JSI12i_1	77.593	59.784			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8727	478	8251	54151	72986	72986			1	
DNIDITLQWLIQHSK	1	Unmodified	1822.9577	0.95774784	3987;5036	Q96BM9;Q9NVJ2	ARL8A;ARL8B	ADP-ribosylation factor-like protein 8A;ADP-ribosylation factor-like protein 8B	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	7		3							3	2		2	2	97.515	92.837	3	6.2069E-18	45710	160513_QHF_FH_JSI12Kac_6	146.3	120.43			0.91419	0.99122	23.787	6	0	Median	1.1879	1.0393	43.487	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0025	0.98791	29.76	2	0	Median	0.91419	0.99122	4.5044	2	0	Median	1250500000	615670000	634800000	382180000	178860000	203320000	0	0	0	499110000	252390000	246720000	369190000	184420000	184760000	8728	3987;5036	8252	54152;54153;54154;54155;54156;54157	72987;72988;72989;72990;72991	72990			5	
DNIIPFLR	0	Unmodified	986.55492	0.5549159	5456;5314	Q9UHW9;Q9UP95	SLC12A6;SLC12A4	Solute carrier family 12 member 6;Solute carrier family 12 member 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		84.981	84.39	2	0.0028402	75140	160511_QHF_FH_JSI10i_2	77.058	54.927			1.2769	1.4496	15.538	3	1	Plateau	1.2769	1.1189	NaN	1	1	Median	0.98208	1.221	NaN	1	0	Median	1.5185	1.5133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83507000	36691000	46816000	18412000	6978500	11433000	22116000	10195000	11921000	42979000	19517000	23462000	0	0	0	8729	5314;5456	8253	54158;54159;54160;54161	72992;72993;72994;72995;72996	72996			5	
DNIKHVPGGGNVQIQNK	2	Acetyl (K)	1858.965	0.96495848	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		49.816	39.326	3	0.0094914	23131	160513_QHF_FH_JSI11Kac_4	42.913	32.992			0.16586	0.17695	162.91	2	1	Median	NaN	NaN	NaN	0	0	Median	0.049388	0.055922	NaN	1	1	Median	0.55703	0.55992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5295500	3890900	1404600	0	0	0	1384200	1346100	38066	3911300	2544800	1366500	0	0	0	8730	1298	8254	54162;54163	72997;72998	72998	1231		2	
DNINIEEAAR	0	Unmodified	1143.552	0.55201537	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.554	34.307	2	0.0028461	30867	160511_QHF_FH_JSI12i_1	60.064	24.523			0.58085	0.56705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58085	0.56705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53802000	33601000	20201000	0	0	0	0	0	0	53802000	33601000	20201000	0	0	0	8731	2462	8255	54164;54165;54166	72999;73000;73001	73000			3	
DNIQAMVIVPTR	0	Unmodified	1355.7231	0.72312022	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.07	4					4	1			2	3	1	3	71.487	66.713	2	2.4665E-16	61024	160511_QHF_FH_JSI12i_1	166.14	146.35			0.94026	1.0016	46.921	8	3	Median	1.0948	0.89517	NaN	1	0	Median	0.88016	1.0355	7.5605	3	1	Median	1.0178	0.96887	NaN	1	0	Median	1.0041	1.048	78.115	3	2	Median	597340000	306450000	290900000	104620000	50471000	54151000	179180000	97954000	81225000	154720000	82249000	72474000	158820000	75773000	83047000	8732	1271	8256	54167;54168;54169;54170;54171;54172;54173;54174;54175	73002;73003;73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015	73005			14	
DNIQAMVIVPTR	0	Oxidation (M)	1371.718	0.71803484	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	61.285	51.863	2	6.9772E-09	26639	160513_QHF_FH_JSI10Kac_3	117.79	94.473			0.8668	1.0122	5.1717	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8668	1.0126	NaN	1	0	Median	0.94865	0.9131	NaN	1	0	Median	0.89862	0.96335	NaN	1	0	Median	13347000	6785000	6562100	0	0	0	5799100	3112000	2687100	3178100	1540500	1637600	4369900	2132500	2237400	8733	1271	8256	54176;54177;54178	73016;73017;73018;73019;73020;73021	73020		905	6	
DNIQGITK	1	Unmodified	887.47125	0.47124585	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	5.47	4				5					1	2	3	3	24.506	20.18	2	0.0060803	17679	160511_QHF_FH_JSI12i_1	63.673	20.549			1.8332	1.7679	77.282	9	8	Median	4.1167	3.4091	NaN	1	1	Median	3.3448	3.9348	41.608	2	2	Median	3.2671	3.1898	77.9	3	3	Plateau	1.197	1.2426	54.536	3	2	Median	2135100000	797020000	1338100000	513460000	143530000	369930000	628850000	213350000	415500000	470860000	145530000	325330000	521910000	294610000	227300000	8734	2019	8257	54179;54180;54181;54182;54183;54184;54185;54186;54187	73022;73023;73024;73025;73026;73027;73028;73029;73030	73025			9	
DNIQGITKPAIR	1	Unmodified	1324.7463	0.7462985	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	37.638	37.584	2;3	0.0034573	31935	160511_QHF_FH_JSI12i_3	42.209	25.267			1.7559	1.6531	86.39	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0751	1.0208	68.172	2	1	Median	3.3915	3.5337	NaN	1	0	Median	117210000	52669000	64540000	0	0	0	0	0	0	76805000	36644000	40161000	40404000	16025000	24379000	8735	2019	8258	54188;54189;54190	73031;73032;73033	73033			3	
DNIQPTTE	0	Unmodified	916.41379	0.41379055	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	18.407	17.623	1	0.047464	15261	160511_QHF_FH_JSI12i_1	74.255	74.255			1.1452	1.0443	8.8801	2	0	Median	1.3834	1.112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94802	0.98073	NaN	1	0	Median	90256000	43617000	46640000	38825000	18249000	20576000	0	0	0	0	0	0	51431000	25367000	26063000	8736	5542	8259	54191;54192	73034	73034			1	
DNIVEGIIR	0	Unmodified	1027.5662	0.56620887	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.676	62.045	2	0.0024995	56255	160511_QHF_FH_JSI11i_1	64.42	46.435			1.0928	0.90302	14.392	3	0	Median	1.0928	0.90302	NaN	1	0	Median	0.74504	0.86927	NaN	1	0	Median	1.1428	1.1343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	100780000	60773000	40007000	22307000	9801400	12505000	51599000	38626000	12973000	26875000	12346000	14529000	0	0	0	8737	287	8260	54193;54194;54195;54196	73035;73036;73037;73038;73039;73040	73035			6	
DNLAEDIMR	0	Unmodified	1075.4968	0.49680868	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	58.413	57.679	2	2.6123E-05	51329	160511_QHF_FH_JSI9i_1	104.2	84.423			0.87373	0.81889	27.611	3	1	Plateau	1.1909	0.98943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60739	0.57802	NaN	1	1	Median	0.64102	0.67774	NaN	1	0	Median	382360000	222580000	159770000	118990000	55615000	63373000	0	0	0	154460000	96631000	57832000	108900000	70339000	38566000	8738	913	8261	54197;54198;54199;54200;54201	73041;73042;73043;73044;73045;73046;73047	73045			7	
DNLAQQSFNMEQANYTIQSLK	1	Unmodified	2442.1485	0.14853809	5169	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	85.83	85.409	2;3	9.6544E-48	77550	160511_QHF_FH_JSI10i_1	243.04	227.24			0.99819	1.0107	13.981	9	2	Median	1.3144	1.0952	6.8687	2	0	Median	0.83307	0.9817	22.025	3	2	Median	1.0276	1.0005	1.4316	2	0	Median	0.96053	0.98397	6.1138	2	0	Median	1135000000	571650000	563330000	255530000	97165000	158370000	369200000	241650000	127550000	263280000	129050000	134230000	246970000	103780000	143190000	8739	5169	8262	54202;54203;54204;54205;54206;54207;54208;54209;54210	73048;73049;73050;73051;73052;73053;73054;73055;73056;73057;73058;73059;73060;73061;73062;73063;73064;73065	73058			18	
DNLEWLAR	0	Unmodified	1015.5087	0.50869399	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	60.748	60.107	2	0.00074898	54448	160511_QHF_FH_JSI10i_1	93.429	68.506			0.76283	0.75882	18.085	4	4	Median	0.72399	0.59358	NaN	1	1	Median	0.5991	0.69959	NaN	1	1	Median	0.9188	0.89252	NaN	1	1	Median	0.80376	0.82306	NaN	1	1	Median	284180000	167660000	116530000	47474000	28619000	18854000	68678000	41184000	27494000	98834000	54335000	44499000	69197000	43517000	25680000	8740	4272	8263	54211;54212;54213;54214;54215;54216;54217	73066;73067;73068;73069;73070;73071;73072	73070			7	
DNLGFPVSDWLFSMWHYSHPPLLER	0	Unmodified	3042.4487	0.44868328	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	3	3	98.593	89.965	3;4	1.3534E-93	51097	160513_QHF_FH_JSI11Kac_6	220.49	191.53			1.1102	1.1691	16.89	10	0	Median	1.4084	1.2113	1.8134	2	0	Median	1.1776	1.3866	7.2468	2	0	Median	1.1028	1.0316	15.604	3	0	Plateau	1.096	1.143	5.1066	3	0	Median	9071200000	3975000000	5096300000	2582900000	1001500000	1581300000	3688100000	1760200000	1927900000	1841100000	792370000	1048700000	959140000	420860000	538280000	8741	575	8264	54218;54219;54220;54221;54222;54223;54224;54225;54226;54227	73073;73074;73075;73076;73077;73078;73079;73080;73081;73082	73073			8	
DNLGFPVSDWLFSMWHYSHPPLLER	0	Oxidation (M)	3058.4436	0.4435979	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	96.409	88.333	3;4	1.0559E-22	47561	160513_QHF_FH_JSI12Kac_6	130.01	119.68			1.0614	1.2461	3.7716	3	0	Plateau	1.5588	1.3351	NaN	1	0	Median	1.0614	1.2461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2048	1.2562	NaN	1	0	Median	2231700000	923050000	1308700000	531020000	178300000	352720000	958630000	444640000	513990000	0	0	0	742080000	300110000	441970000	8742	575	8264	54228;54229;54230;54231	73083;73084;73085;73086	73084		218	4	
DNLHQVSK	1	Unmodified	939.47739	0.47739386	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.6	0.49	2	3								1	1	2	1	7.347	7.0292	2	0.0032389	4893	160511_QHF_FH_JSI10i_1	80.165	42.032			0.76486	0.90747	40.145	5	2	Median	1.143	0.9728	NaN	1	0	Median	0.76486	0.90747	NaN	1	1	Median	0.62214	0.62307	67.912	2	1	Median	0.61116	0.67584	NaN	1	0	Median	331370000	214600000	116770000	66709000	31014000	35695000	61257000	53638000	7619600	125950000	81060000	44886000	77461000	48893000	28568000	8743	5365	8265	54232;54233;54234;54235;54236	73087;73088;73089;73090	73088			4	
DNLLLDMYLAPHVR	0	Unmodified	1668.8658	0.86576171	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	4	2	97.119	96.893	2;3	7.6149E-07	85121	160511_QHF_FH_JSI11i_2	103.83	97.001			0.87925	1.0243	25.119	9	5	Median	1.3545	1.1497	NaN	1	0	Median	0.82499	1.035	1.5713	2	0	Median	1.0049	1.0048	39.278	4	4	Median	0.90437	0.98815	5.0744	2	1	Median	292260000	141660000	150610000	34444000	10036000	24408000	54750000	29651000	25099000	137600000	68400000	69202000	65465000	33568000	31897000	8744	2349	8266	54237;54238;54239;54240;54241;54242;54243;54244;54245	73091;73092;73093;73094;73095;73096;73097;73098;73099;73100;73101;73102;73103;73104	73098			14	
DNLLNAWR	0	Unmodified	1000.509	0.50902834	2220	Q04726;Q04724;Q04727;Q04725	TLE3;TLE1;TLE4;TLE2	Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4;Transducin-like enhancer protein 2	yes	no	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		61.701	61.227	2	0.0047708	53170	160511_QHF_FH_JSI11i_2	75.213	48.251			0.89651	0.86778	96.074	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89651	0.86778	96.074	2	2	Median	NaN	NaN	NaN	0	0	Median	131040000	44793000	86250000	0	0	0	0	0	0	131040000	44793000	86250000	0	0	0	8745	2220	8267	54246;54247	73105;73106	73106			2	
DNLPLQENVTIQK	1	Unmodified	1510.7991	0.79912193	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.487	57.838	2	1.2718E-05	52216	160511_QHF_FH_JSI10i_1	119.45	86.843			0.13531	0.1217	126.27	4	4	Median	0.088464	0.073738	NaN	1	1	Median	0.060032	0.070227	NaN	1	1	Median	0.20696	0.20087	NaN	1	1	Median	1.0102	1.0437	NaN	1	1	Median	1155400000	1062400000	93025000	354500000	327600000	26896000	387990000	372960000	15024000	361350000	336280000	25069000	51547000	25511000	26036000	8746	4300	8268	54248;54249;54250;54251	73107;73108;73109;73110	73109			4	
DNLQILR	0	Unmodified	870.49232	0.49231565	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	0				By MS/MS	1	0	1												1	43.894	43.257	2	0.00605	39434	160511_QHF_FH_JSI12i_1	94.262	22.123			1.0702	1.1202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0702	1.1202	NaN	1	1	Median	196740000	80715000	116030000	0	0	0	0	0	0	0	0	0	196740000	80715000	116030000	8747	4518;3068	8269	54252	73111	73111			1	
DNLSYIEHIFEISR	0	Unmodified	1734.8577	0.85769944	2632	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	92.863	83.713	3	7.7511E-05	45284	160513_QHF_FH_JSI12Kac_6	93.754	82.315			1.1283	1.084	0.16364	2	0	Median	1.2526	1.0853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0164	1.0828	NaN	1	0	Median	79464000	41733000	37732000	34596000	15140000	19456000	0	0	0	0	0	0	44869000	26593000	18276000	8748	2632	8270	54253;54254	73112	73112			0	
DNLTLWTADNAGEEGGEAPQEPQS	0	Unmodified	2528.0939	0.093919563	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	76.604	76.142	2;3	3.0917E-10	69186	160511_QHF_FH_JSI10i_1	130.47	127.27			1.0056	1.0249	14.448	8	2	Median	1.3265	1.0982	15.134	2	1	Median	0.95808	1.1465	5.6815	2	0	Median	1.0396	1.0003	7.7164	2	0	Median	0.85299	0.87847	17.504	2	1	Median	598200000	295530000	302670000	101060000	38636000	62424000	186040000	104200000	81835000	189770000	84098000	105670000	121330000	68591000	52739000	8749	1385	8271	54255;54256;54257;54258;54259;54260;54261;54262;54263;54264	73113;73114;73115;73116;73117;73118;73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129;73130	73124			17	
DNLTLWTSDMQGDGEEQNK	1	Unmodified	2179.9328	0.93279124	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								2	2	3	3	70.633	70.097	2;3	0	63797	160511_QHF_FH_JSI11i_1	395.95	360.99			0.97166	0.95283	6.3286	8	0	Median	1.0833	0.88791	4.6733	2	0	Median	0.82124	0.97618	4.0149	2	0	Median	0.97166	0.94507	1.7484	2	0	Median	0.96828	1.0276	3.85	2	0	Median	6667500000	3508400000	3159000000	1246500000	536280000	710270000	1665200000	921110000	744040000	1984300000	1096700000	887530000	1771500000	954320000	817170000	8750	1990	8272	54265;54266;54267;54268;54269;54270;54271;54272;54273;54274	73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142;73143;73144;73145;73146;73147;73148;73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170	73133			40	
DNLTLWTSDMQGDGEEQNK	1	Oxidation (M)	2195.9277	0.92770586	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	59.086	58.489	2	1.2902E-32	53008	160511_QHF_FH_JSI12i_1	194.23	184.16			1.1135	1.1828	10.527	5	4	Median	1.4216	1.1828	NaN	1	1	Median	1.0277	1.2235	11.431	2	2	Median	1.3262	1.2817	NaN	1	1	Median	0.99823	1.0179	NaN	1	0	Median	276900000	123060000	153840000	45070000	17081000	27989000	88676000	43555000	45121000	61352000	23807000	37546000	81801000	38621000	43181000	8751	1990	8272	54275;54276;54277;54278;54279	73171;73172;73173;73174;73175;73176;73177;73178;73179;73180	73174		1653	10	
DNLTLWTSDQQDDDGGEGNN	0	Unmodified	2192.873	0.87302775	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	1	2	69.534	68.962	2	6.4212E-09	62276	160511_QHF_FH_JSI12i_1	112.44	107.26			1.0083	1.0671	20.063	6	3	Median	1.6054	1.3104	14.105	2	2	Median	0.82038	0.96187	25.297	2	1	Median	1.0404	0.98628	NaN	1	0	Median	0.97058	0.98995	NaN	1	0	Median	331260000	156350000	174910000	43142000	14554000	28588000	140780000	79634000	61147000	65562000	29342000	36220000	81776000	32822000	48954000	8752	1976	8273	54280;54281;54282;54283;54284;54285;54286;54287	73181;73182;73183;73184;73185;73186;73187;73188;73189;73190;73191;73192;73193;73194	73184			14	
DNLTLWTSDQQDEEAGEGN	0	Unmodified	2120.8771	0.8770505	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	70.885	70.409	2	3.9647E-08	63889	160511_QHF_FH_JSI12i_1	110.92	97.244			1.1915	1.2186	30.124	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5345	1.5079	NaN	1	1	Median	0.9252	0.98479	NaN	1	0	Median	68642000	32050000	36592000	0	0	0	0	0	0	28162000	14013000	14150000	40480000	18038000	22442000	8753	2224	8274	54288;54289	73195;73196;73197	73196			3	
DNLTLWTSDTQGDEAEAGEGGEN	0	Unmodified	2407.9888	0.98878579	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	2	3	3	73.493	73.064	2;3	4.8673E-30	66496	160511_QHF_FH_JSI11i_1	178.85	178.85			0.94121	1.0351	15.617	8	2	Median	1.3694	1.1253	NaN	1	0	Median	0.85332	0.98219	6.4876	2	0	Median	0.85378	0.83927	13.531	3	1	Median	1.1245	1.1793	17.521	2	1	Median	1266400000	641920000	624490000	170040000	67248000	102790000	428370000	209000000	219360000	405440000	226270000	179170000	262560000	139400000	123160000	8754	2051	8275	54290;54291;54292;54293;54294;54295;54296;54297;54298	73198;73199;73200;73201;73202;73203;73204;73205;73206;73207;73208;73209;73210;73211;73212;73213;73214;73215;73216;73217;73218	73199			21	
DNLTLWTSENQGDEGDAGEGEN	0	Unmodified	2349.9469	0.94692097	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	70.177	69.627	2;3	8.7216E-58	63379	160511_QHF_FH_JSI11i_1	221.59	219.16			1.055	1.0269	15.872	8	1	Median	1.5292	1.2611	23.203	2	1	Median	0.8058	0.9356	6.6568	2	0	Median	1.055	1.0212	8.6349	2	0	Median	1.0612	1.0779	12.704	2	0	Median	662650000	353310000	309330000	111980000	44122000	67861000	157800000	99762000	58035000	158250000	87805000	70447000	234620000	121620000	112990000	8755	1384	8276	54299;54300;54301;54302;54303;54304;54305;54306;54307	73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230	73220			12	
DNLTSATLPR	0	Unmodified	1086.5669	0.56693715	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.876	38.271	2	0.0011159	34747	160511_QHF_FH_JSI12i_1	78.655	39.633			1.1085	1.1547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1085	1.1547	NaN	1	1	Median	63468000	29561000	33907000	0	0	0	0	0	0	0	0	0	63468000	29561000	33907000	8756	3760	8277	54308	73231	73231			1	
DNMALQR	0	Oxidation (M)	862.3967	0.3967007	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	8.8731	5.9232	2	0.012082	5119	160511_QHF_FH_JSI12i_1	85.265	59.438			1.0369	1.01	10.729	8	1	Median	1.0943	0.90761	NaN	1	0	Median	0.7849	0.94125	2.5432	2	0	Median	1.1028	1.086	2.8483	2	0	Median	0.989	1.0816	13.049	3	1	Median	1229500000	610200000	619320000	200860000	93793000	107060000	278440000	154950000	123490000	246450000	124760000	121700000	503770000	236700000	267070000	8757	1480	8278	54309;54310;54311;54312;54313;54314;54315;54316	73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242	73234		1152	11	
DNMALQR	0	Unmodified	846.40179	0.40178608	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.07	3					3	1			1	1	2	3	17.911	13.481	2	0.00062822	8368	160513_QHF_FH_JSI12Kac_3	114.72	81.792			0.98712	1.0447	34.362	7	3	Median	2.6936	2.1924	NaN	1	1	Median	0.82915	0.98687	NaN	1	0	Median	1.2749	1.2582	26.294	2	1	Median	0.87038	0.92953	15.392	3	1	Median	4741800000	2191900000	2549900000	1392500000	706390000	686060000	15684000	7425000	8258800	1622000000	679250000	942740000	1711700000	798810000	912860000	8758	1480	8278	54317;54318;54319;54320;54321;54322;54323	73243;73244;73245;73246;73247;73248	73247			6	
DNNELLLFILK	1	Unmodified	1330.7497	0.74965254	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	102.44	102.33	2	1.7824E-29	90238	160511_QHF_FH_JSI9i_2	185.71	156.62			1.0069	0.94808	28.992	9	2	Median	1.2518	1.0516	2.5436	2	0	Median	0.50196	0.5978	4.1026	2	0	Median	0.87889	0.84471	16.325	2	0	Median	1.075	1.2021	20.003	3	2	Median	808290000	434050000	374240000	117690000	51301000	66391000	190270000	123310000	66958000	213270000	113420000	99851000	287060000	146020000	141040000	8759	1674	8279	54324;54325;54326;54327;54328;54329;54330;54331;54332	73249;73250;73251;73252;73253;73254;73255;73256;73257;73258;73259	73255			11	
DNNGVIGLLEPMK	1	Unmodified	1398.7177	0.71770049	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		86.867	86.274	2	0.00032379	76792	160511_QHF_FH_JSI9i_1	98.407	87.243			0.95573	0.8526	2.1032	2	2	Median	1.0255	0.84001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89075	0.86537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	129890000	77161000	52734000	47569000	24962000	22606000	0	0	0	82326000	52198000	30128000	0	0	0	8760	1145	8280	54333;54334	73260;73261	73261			2	
DNNGVIGLLEPMKK	2	Unmodified	1526.8127	0.81266351	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		74.875	74.163	2	0.0031249	65087	160511_QHF_FH_JSI11i_2	56.205	49.821			0.93158	0.86453	11.752	2	1	Median	0.91485	0.79559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94861	0.93943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38483000	17596000	20887000	12222000	5226000	6995500	0	0	0	26262000	12370000	13892000	0	0	0	8761	1145	8281	54335;54336	73262;73263	73263			2	
DNNLLGK	1	Unmodified	772.40792	0.40791731	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.49	7	2	3		3	6				6	3	6	6	23.603	18.895	2	0.0017493	6011	160513_QHF_FH_JSI9Kac_3	105.39	42.676			1.0548	0.99288	117.99	18	16	Median	1.3687	1.1142	127.22	5	4	Median	1.1305	1.3523	172.19	2	2	Median	0.70595	0.71021	122.57	5	5	Median	1.4264	1.5617	125.78	6	5	Median	17414000000	5744300000	11670000000	3936200000	1381400000	2554800000	3521200000	1227200000	2294000000	6359400000	2093700000	4265700000	3597500000	1042000000	2555400000	8762	985;1827	8282	54337;54338;54339;54340;54341;54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357	73264;73265;73266;73267;73268;73269;73270;73271;73272;73273;73274;73275;73276;73277;73278;73279;73280;73281;73282;73283;73284;73285	73273			22	
DNNLLGR	0	Unmodified	800.41407	0.41406533	954;1416;1108	P0DMV9;P0DMV8;P34931;P17066	HSPA1B;HSPA1A;HSPA1L;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	22.003	21.476	2	0.0031451	18550	160511_QHF_FH_JSI11i_1	106.42	82.212			6.0404	6.1705	12.54	4	0	Median	7.4964	5.9542	NaN	1	0	Median	5.6021	6.4712	NaN	1	0	Median	6.513	6.3946	NaN	1	0	Median	4.6166	4.9325	NaN	1	0	Median	5279100000	827100000	4452000000	1172900000	102510000	1070400000	1269300000	235340000	1033900000	1408100000	210080000	1198100000	1428800000	279170000	1149700000	8763	954;1416;1108	8283	54358;54359;54360;54361	73286;73287	73286			2	
DNNLTTGK	1	Unmodified	861.41921	0.41921028	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.75	4.76	3				1					1	1		2	9.0772	6.9143	2	0.0021049	6343	160511_QHF_FH_JSI12i_1	91.853	0			0.74491	0.69276	73.144	4	4	Median	0.94582	0.77368	NaN	1	1	Median	0.20657	0.24013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8836	0.93035	57.324	2	2	Median	567320000	310260000	257060000	84205000	40989000	43216000	2206200	1720300	485940	0	0	0	480910000	267550000	213360000	8764	1126	8284	54362;54363;54364;54365	73288;73289;73290;73291	73289			4	
DNNMGLVK	1	Unmodified	889.43275	0.43275186	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		25.147	24.92	2	0.00033075	21915	160511_QHF_FH_JSI10i_1	111.82	52.611			0.82668	0.88176	19.466	2	1	Median	NaN	NaN	NaN	0	0	Median	0.65409	0.76837	NaN	1	0	Median	1.0448	1.0119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	388700000	237330000	151370000	0	0	0	171500000	104810000	66697000	217200000	132520000	84678000	0	0	0	8765	5448	8285	54366;54367	73292;73293	73293			2	
DNNQFASASLDR	0	Unmodified	1336.6008	0.60075648	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.35	34.746	2	7.454E-16	31059	160511_QHF_FH_JSI10i_1	186.87	173.28			1.0415	1.1217	34.644	4	1	Median	2.4621	2.0037	NaN	1	1	Median	0.99248	1.1782	NaN	1	0	Median	1.093	1.0678	NaN	1	0	Median	0.83407	0.89636	NaN	1	0	Median	1483700000	719560000	764170000	272200000	86551000	185650000	464180000	267870000	196310000	349710000	155470000	194250000	397640000	209670000	187970000	8766	1438	8286	54368;54369;54370;54371	73294;73295;73296;73297;73298;73299;73300	73299			7	
DNPALNAQAALSQAR	0	Unmodified	1538.7801	0.78011783	399	O60232	SSSCA1	Sjoegren syndrome/scleroderma autoantigen 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	5										3	2		54.303	53.899	2;3	0.0001802	48561	160511_QHF_FH_JSI10i_1	106.17	91.484			0.49241	0.54057	24.803	5	5	Median	NaN	NaN	NaN	0	0	Median	0.42491	0.49917	23.929	3	3	Plateau	0.64458	0.62422	35.894	2	2	Median	NaN	NaN	NaN	0	0	Median	437810000	253550000	184260000	0	0	0	248420000	157360000	91067000	189390000	96196000	93190000	0	0	0	8767	399	8287	54372;54373;54374;54375;54376	73301;73302;73303;73304;73305	73303			5	
DNPEATQQMNDLIIGK	1	Unmodified	1785.8567	0.85671317	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	66.857	66.259	2	2.6166E-08	60211	160511_QHF_FH_JSI11i_1	134.98	118.6			0.88571	0.87097	18.329	7	7	Median	1.099	0.915	21.835	2	2	Median	0.81337	0.95131	12.477	2	2	Median	1.049	1.0371	25.483	2	2	Median	0.71163	0.74688	NaN	1	1	Median	636560000	319670000	316890000	191770000	91463000	100310000	170930000	94882000	76047000	195650000	84663000	110980000	78213000	48657000	29556000	8768	2947	8288	54377;54378;54379;54380;54381;54382;54383	73306;73307;73308;73309;73310;73311;73312;73313	73307			8	
DNPFSLGESFGSR	0	Unmodified	1411.6368	0.63680763	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	72.961	72.399	2	6.8298E-05	65960	160511_QHF_FH_JSI12i_1	103.91	97.605			0.96178	1.0364	28.434	5	1	Median	1.2944	1.0986	NaN	1	0	Median	1.1294	1.3535	37.754	2	1	Median	0.96178	0.93699	NaN	1	0	Median	0.81375	0.84564	NaN	1	0	Median	204720000	98994000	105730000	29318000	11184000	18134000	68662000	34771000	33891000	58450000	29039000	29410000	48293000	24000000	24293000	8769	3555	8289	54384;54385;54386;54387;54388	73314;73315;73316;73317;73318;73319;73320;73321;73322	73317			9	
DNPGVVTCLDEAR	0	Unmodified	1444.6616	0.66164217	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	51.307	47.256	2	0.00015587	42569	160511_QHF_FH_JSI10i_1	155.48	143.32			0.97672	1.145	39.433	5	3	Median	NaN	NaN	NaN	0	0	Median	0.97672	1.145	NaN	1	1	Median	0.8217	0.78597	19.382	2	1	Median	1.504	1.6137	25.83	2	1	Median	799660000	389830000	409830000	0	0	0	251170000	119910000	131270000	337600000	192240000	145370000	210880000	77685000	133200000	8770	1208	8290	54389;54390;54391;54392;54393	73323;73324;73325;73326;73327	73326			5	
DNPLDPVLAK	1	Unmodified	1080.5815	0.58152458	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	58.051	51.97	2	2.1128E-09	53228	160511_QHF_FH_JSI10i_1	130.66	117.62			1.0791	1.0749	50.26	8	0	Median	0.94672	0.75257	32.377	2	0	Median	1.0863	1.3011	19.848	2	0	Median	1.0791	1.0599	2.6743	2	0	Median	1.808	1.9284	83.338	2	0	Median	2996600000	1414400000	1582200000	763400000	374830000	388570000	625200000	311850000	313350000	778560000	349910000	428640000	829410000	377800000	451600000	8771	3968	8291	54394;54395;54396;54397;54398;54399;54400;54401	73328;73329;73330;73331;73332;73333;73334;73335;73336;73337;73338;73339;73340;73341;73342;73343;73344;73345;73346;73347;73348;73349;73350	73339			23	
DNPNQYHYVA	0	Unmodified	1219.5258	0.52580062	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	27.484	26.902	2	0.00094243	23996	160511_QHF_FH_JSI12i_1	68.846	50.534			1.0172	1.0671	8.2334	4	0	Median	1.4986	1.223	NaN	1	0	Median	0.91531	1.0936	NaN	1	0	Median	1.0406	1.0158	NaN	1	0	Median	0.99426	1.0411	NaN	1	0	Median	853230000	394170000	459060000	184160000	78517000	105650000	264400000	134750000	129640000	206850000	111210000	95643000	197820000	69695000	128120000	8772	2456	8292	54402;54403;54404;54405;54406	73351;73352;73353;73354;73355;73356;73357;73358;73359	73354			9	
DNPPNIPSSSSK	1	Unmodified	1241.5888	0.58879481	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.5	5.5	1				1							1	1	25.817	21.818	2	0.034274	19021	160511_QHF_FH_JSI12i_1	46.955	39.015			0.73732	0.74425	26.774	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93235	0.89938	NaN	1	0	Median	0.58309	0.61588	NaN	1	1	Median	144600000	87006000	57589000	0	0	0	0	0	0	1815500	885510	930040	142780000	86121000	56658000	8773	2625	8293	54407;54408	73360;73361	73361			2	
DNPPNIPSSSSKPK	2	Unmodified	1466.7365	0.73652168	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	19.954	19.512	2;3	9.7652E-05	16964	160511_QHF_FH_JSI12i_1	86.641	66.057			1.0446	1.0488	19.722	6	0	Median	1.4248	1.1738	NaN	1	0	Median	0.79439	0.92563	NaN	1	0	Median	0.86239	0.83184	23.074	2	0	Median	1.1333	1.1528	3.6566	2	0	Median	564930000	281760000	283170000	111960000	47062000	64903000	105620000	54271000	51349000	182920000	93008000	89912000	164420000	87419000	77003000	8774	2625	8294	54409;54410;54411;54412;54413;54414	73362;73363;73364;73365;73366;73367;73368;73369;73370	73366			9	
DNPPNIPSSSSKPK	2	Acetyl (K)	1508.7471	0.74708636	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	1	0	0	1			By MS/MS	By MS/MS	11.7	0.471				1	2							1	2	42.694	33.78	2	0.030164	14541	160513_QHF_FH_JSI11Kac_2	54.143	38.572			0.94338	0.98923	19.611	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94338	0.98923	19.611	2	0	Median	10244000	3414800	6829700	0	0	0	0	0	0	2280800	0	2280800	7963700	3414800	4548900	8775	2625	8294	54415;54416;54417	73371;73372	73371			2	
DNPQTHYYAVAVVK	1	Unmodified	1603.7995	0.79945628	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.27	2	6					4	9	2	5	7	6	5	51.965	44.849	2;3	4.1944E-17	25996	160513_QHF_FH_JSI11Kac_4	115.78	80.043		+	0.9082	0.9547	16.759	23	6	Median	1.312	1.1195	11.603	5	2	Median	0.89245	1.0616	19.996	7	1	Median	0.89242	0.8942	9.6174	6	0	Median	1.0028	1.0906	13.884	5	3	Linear	969390000	519640000	449750000	116500000	50268000	66229000	323760000	180380000	143380000	244230000	134290000	109930000	284910000	154700000	130210000	8776	66	8295	54418;54419;54420;54421;54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439;54440	73373;73374;73375;73376;73377;73378;73379;73380;73381;73382;73383;73384;73385;73386;73387;73388;73389;73390;73391;73392;73393;73394;73395;73396;73397;73398;73399;73400;73401;73402;73403;73404;73405;73406;73407;73408;73409	73385			37	
DNPSIFVHSPHALMLQDVK	1	Unmodified	2147.0834	0.083359059	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		71.684	71.684	3;4	0.0095606	63867	160511_QHF_FH_JSI11i_3	35.703	26.045			1.2364	1.1383	12.106	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2364	1.1383	12.106	2	0	Median	NaN	NaN	NaN	0	0	Median	70615000	35120000	35495000	0	0	0	0	0	0	70615000	35120000	35495000	0	0	0	8777	1718	8296	54441;54442	73410;73411	73410			2	
DNPSPGPSR	0	Unmodified	925.42536	0.42535829	4925	Q9NQS1	AVEN	Cell death regulator Aven	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.1187	6.8815	2	0.007707	4741	160511_QHF_FH_JSI10i_1	53.968	33.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8778	4925	8297	54443	73412	73412			1	
DNPTAQQIMQLLR	0	Unmodified	1526.7875	0.78751139	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			96.081	95.835	2	0.003466	84926	160511_QHF_FH_JSI10i_2	56.548	43.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8779	2270	8298	54444	73413	73413			1	
DNPTVVVEDLR	0	Unmodified	1255.6408	0.64083038	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	13	0.707					1	2	1				2		2	68.322	58.987	2	1.1747E-14	29691	160513_QHF_FH_JSI10Kac_3	153.12	139.77			0.82839	0.94766	58.095	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1972	1.4291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57319	0.62842	NaN	1	0	Median	59429000	33253000	26176000	0	0	0	25926000	13588000	12338000	0	0	0	33504000	19665000	13839000	8780	2620	8299	54445;54446;54447;54448	73414;73415;73416;73417;73418	73418			5	
DNQHQGSYSEGAQMNGIQPEEIGR	0	Unmodified	2644.1572	0.1572053	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.833	48.153	3	3.5175E-16	43429	160511_QHF_FH_JSI11i_1	115.38	114.23			1.2308	1.168	16.023	4	1	Median	1.1772	0.95047	NaN	1	1	Median	0.8659	1.0512	NaN	1	0	Median	1.3356	1.2977	NaN	1	0	Median	1.2869	1.316	NaN	1	0	Median	289990000	133940000	156050000	49540000	23034000	26507000	66500000	34953000	31547000	87849000	38809000	49040000	86098000	37146000	48952000	8781	446	8300	54449;54450;54451;54452	73419;73420;73421;73422;73423;73424;73425	73420			7	
DNQLSEVANK	1	Unmodified	1116.5411	0.54111633	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	6				2					2	2	1	3	26.022	24.035	2	3.1776E-13	21120	160511_QHF_FH_JSI10i_1	138.4	107.17			0.54282	0.49151	99.441	6	5	Median	0.94185	0.76703	145.46	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87426	0.86544	NaN	1	0	Median	0.26565	0.27914	112.14	3	3	Median	1725200000	992020000	733180000	576980000	305060000	271920000	0	0	0	444540000	233250000	211290000	703680000	453710000	249970000	8782	2586	8301	54453;54454;54455;54456;54457;54458;54459;54460	73426;73427;73428;73429;73430;73431;73432;73433;73434	73430			9	
DNQLSEVANKFAK	2	Acetyl (K)	1504.7522	0.75217174	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	79.257	70.937	2	0.013642	35184	160513_QHF_FH_JSI12Kac_3	53.237	43.233			1.5023	1.6321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5023	1.6321	NaN	1	0	Median	3300200	1264200	2036000	0	0	0	0	0	0	0	0	0	3300200	1264200	2036000	8783	2586	8302	54461	73435	73435	2564		1	
DNSDFDLLTVSETANEPPQDEGNSFNSPR	0	Unmodified	3194.3912	0.3912238	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	87.399	86.969	3	9.6133E-07	79054	160511_QHF_FH_JSI12i_1	60.348	57.467			1.2712	1.2398	48.366	4	3	Median	NaN	NaN	NaN	0	0	Median	0.51519	0.57797	NaN	1	0	Median	1.2793	1.2398	33.124	2	2	Median	1.601	1.619	NaN	1	1	Median	121630000	55120000	66508000	5263500	0	5263500	33350000	21178000	12173000	57573000	27240000	30333000	25440000	6701700	18738000	8784	282	8303	54462;54463;54464;54465;54466	73436;73437;73438;73439;73440;73441;73442	73438			7	
DNSELEEK	1	Unmodified	962.41927	0.41926986	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.799	10.213	2	1.9172E-05	8069	160511_QHF_FH_JSI12i_1	116.05	43.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8785	3896	8304	54467;54468	73443;73444	73443			2	
DNSHPFVGLAFK	1	Unmodified	1330.667	0.66698555	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	1	4	63.907	62.978	2;3	0.00010164	54685	160511_QHF_FH_JSI11i_2	70.563	62.05			0.8396	0.803	55.726	7	2	Median	0.9152	0.77336	NaN	1	1	Median	0.6498	0.803	NaN	1	0	Median	0.77028	0.78687	NaN	1	0	Median	0.93098	1.0445	78.576	4	1	Median	385090000	229550000	155540000	52808000	27140000	25668000	59383000	40413000	18969000	79369000	38541000	40828000	193530000	123450000	70073000	8786	4221	8305	54469;54470;54471;54472;54473;54474;54475	73445;73446;73447;73448;73449;73450	73449			6	
DNSILPPLDK	1	Unmodified	1110.5921	0.59208927	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		60.693	60.281	2	0.00072819	53566	160511_QHF_FH_JSI9i_1	78.556	58.78			0.31241	0.33277	6.1894	2	0	Median	NaN	NaN	NaN	0	0	Median	0.29859	0.34766	NaN	1	0	Median	0.32687	0.31852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103580000	75017000	28560000	0	0	0	50595000	38668000	11926000	52983000	36349000	16634000	0	0	0	8787	2253	8306	54476;54477;54478	73451;73452;73453	73453			3	
DNSNIILLGDSQGDLR	0	Unmodified	1728.8642	0.86424139	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.327	72.047	2	2.3552E-06	65358	160511_QHF_FH_JSI10i_1	119.96	85.271			0.92637	0.97445	13.593	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91744	1.0728	NaN	1	1	Median	0.93539	0.88515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107020000	54720000	52296000	0	0	0	41774000	30368000	11406000	65241000	24352000	40890000	0	0	0	8788	4637	8307	54479;54480	73454;73455	73455			2	
DNSTMGYMAAK	1	Unmodified	1187.4951	0.49509412	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.48	4.97	5	4	5		4	3				2	6	7	6	34.546	30.591	2	1.4899E-29	27037	160511_QHF_FH_JSI9i_1	187.64	182.28			1.0172	1.0359	73.59	18	6	Median	1.1013	0.92456	6.302	2	0	Median	0.84231	1.0075	40.542	6	2	Median	1.2074	1.2005	120.08	6	3	Median	0.97056	1.0404	8.1844	4	1	Median	14239000000	6639500000	7599300000	3607100000	1596400000	2010700000	3305400000	1678000000	1627400000	3928600000	1808200000	2120400000	3397700000	1556900000	1840800000	8789	880	8308	54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495;54496;54497;54498;54499;54500;54501	73456;73457;73458;73459;73460;73461;73462;73463;73464;73465;73466;73467;73468;73469;73470;73471;73472;73473;73474;73475;73476;73477;73478;73479;73480;73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492	73482			37	
DNSTMGYMAAK	1	Oxidation (M)	1203.49	0.49000874	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	12			1	7	7				3	7	11	6	25.317	20.679	2	1.9326E-10	27614	160511_QHF_FH_JSI11i_1	140.75	101.45			0.85403	0.9594	59.318	22	5	Median	0.53751	0.43887	49.927	2	1	Median	0.79153	0.91816	34.202	6	2	Median	1.023	0.97647	73.04	9	1	Median	1.0129	1.0618	44.738	5	1	Median	4128800000	2183500000	1945300000	827250000	544090000	283150000	335650000	197800000	137860000	1601200000	921440000	679720000	1364800000	520180000	844610000	8790	880	8308	54502;54503;54504;54505;54506;54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518;54519;54520;54521;54522;54523;54524;54525;54526;54527;54528	73493;73494;73495;73496;73497;73498;73499;73500;73501;73502;73503;73504;73505;73506;73507;73508;73509;73510;73511;73512;73513;73514;73515;73516;73517;73518;73519;73520;73521	73495		439;440	27	
DNSTMGYMAAK	1	2 Oxidation (M)	1219.4849	0.48492336	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	5.41	6		2	2	3	4				2	3	5	7	16.341	11.171	2	8.495E-12	4236	160513_QHF_FH_JSI11Kac_2	140.75	128.91			0.92712	0.97095	50.131	12	3	Median	NaN	NaN	NaN	0	0	Median	0.75998	0.89415	12.664	2	0	Median	1.1578	1.1232	68.832	4	0	Median	1.1239	1.1856	45.656	6	3	Median	806110000	284900000	521210000	0	0	0	17074000	10170000	6904900	280800000	90101000	190700000	508240000	184630000	323610000	8791	880	8308	54529;54530;54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545	73522;73523;73524;73525;73526;73527;73528;73529;73530;73531;73532;73533;73534;73535;73536;73537;73538;73539;73540;73541;73542;73543	73525		439;440	22	
DNSTMGYMAAKK	2	Acetyl (K)	1357.6006	0.60062182	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		49.833	40.455	2	5.5639E-07	22318	160513_QHF_FH_JSI11Kac_3	109.42	100.89			0.26893	0.26158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26893	0.26158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3541300	2460000	1081300	0	0	0	538150	0	538150	3003100	2460000	543100	0	0	0	8792	880	8309	54546;54547	73544;73545;73546	73544	598;599		3	
DNSTMGYMAAKK	2	Acetyl (K);Oxidation (M)	1373.5955	0.59553644	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		36.55	27.613	2	0.046539	16147	160513_QHF_FH_JSI11Kac_3	44.309	40.011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2344700	2344700	0	0	0	0	0	0	0	2344700	2344700	0	0	0	0	8793	880	8309	54548	73547	73547	598;599	439;440	1	
DNSTMGYMMAK	1	Unmodified	1247.4985	0.49846494	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.44	4	3	5			3	3			4	5	6	3	47.836	43.728	2	1.3362E-29	39149	160511_QHF_FH_JSI9i_1	188.66	175.61			1.0084	1.0245	23.317	17	4	Median	1.4043	1.1768	33.903	4	2	Median	0.89052	1.0359	13.816	5	0	Median	1.0422	1.0245	27.202	5	1	Median	0.81936	0.85537	9.6766	3	1	Median	21759000000	10324000000	11435000000	4341000000	1774400000	2566500000	5669100000	2849400000	2819700000	6068200000	2993100000	3075100000	5680700000	2707000000	2973800000	8794	898	8310	54549;54550;54551;54552;54553;54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566	73548;73549;73550;73551;73552;73553;73554;73555;73556;73557;73558;73559;73560;73561;73562;73563;73564;73565;73566;73567;73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579;73580;73581;73582;73583;73584	73574			37	
DNSTMGYMMAK	1	3 Oxidation (M)	1295.4832	0.4832088	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	3	0		By MS/MS	By MS/MS	By MS/MS	9.14	5.17	2				3	2					3	3	1	12.176	6.899	2	8.7024E-12	4167	160513_QHF_FH_JSI11Kac_2	136.63	132.18			0.84451	0.93759	16.734	7	0	Median	NaN	NaN	NaN	0	0	Median	0.62673	0.70574	18.479	3	0	Plateau	0.86381	0.83377	16.579	3	0	Median	1.0027	1.0367	NaN	1	0	Median	127490000	65086000	62407000	0	0	0	38774000	17367000	21406000	75522000	41325000	34197000	13198000	6393400	6804400	8795	898	8310	54567;54568;54569;54570;54571;54572;54573	73585;73586;73587;73588;73589;73590;73591	73587		467;468;469	7	
DNSTMGYMMAK	1	Oxidation (M)	1263.4934	0.49337956	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.79	19				3	10				7	10	8	7	33.109	29.019	2	4.77E-18	28059	160511_QHF_FH_JSI12i_1	163.64	158.27			0.99447	1.0594	31.327	30	5	Median	1.2872	1.0528	44.055	7	0	Median	0.9411	1.0752	31.381	9	2	Median	1.1085	1.0893	19.86	7	1	Median	0.98841	1.05	28.538	7	2	Median	4335300000	1903800000	2431500000	1581800000	533840000	1047900000	948710000	459840000	488870000	801100000	384730000	416370000	1003700000	525380000	478360000	8796	898	8310	54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591;54592;54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605	73592;73593;73594;73595;73596;73597;73598;73599;73600;73601;73602;73603;73604;73605;73606;73607;73608;73609;73610;73611;73612;73613;73614;73615;73616;73617;73618;73619;73620;73621;73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634;73635;73636;73637	73604		467;468;469	45	
DNSTMGYMMAK	1	2 Oxidation (M)	1279.4883	0.48829418	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	2	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.53	5.57	6				4	7				3	3	7	4	24.193	18.906	2	0.00036019	10131	160513_QHF_FH_JSI11Kac_3	79.16	76.308			1.034	0.99842	23.638	16	1	Median	1.1213	0.92762	16.078	2	1	Median	0.88479	1.0023	8.1765	3	0	Plateau	1.0377	0.99457	17.588	7	0	Median	1.2222	1.2966	31.865	4	0	Median	222810000	109200000	113610000	69601000	33760000	35841000	35462000	19861000	15601000	76599000	37268000	39331000	41143000	18310000	22833000	8797	898	8310	54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622	73638;73639;73640;73641;73642;73643;73644;73645;73646;73647;73648;73649	73641		467;468;469	12	
DNSTMGYMMAKK	2	Acetyl (K);2 Oxidation (M)	1449.5938	0.59382188	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	2	1			By MS/MS		13	0						3						3		34.026	25.195	2	0.0053881	15835	160513_QHF_FH_JSI11Kac_3	60.518	52.593			0.22278	0.22068	13.315	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22278	0.22068	13.315	2	0	Median	NaN	NaN	NaN	0	0	Median	14399000	12588000	1811400	0	0	0	0	0	0	14399000	12588000	1811400	0	0	0	8798	898	8311	54623;54624;54625	73650;73651;73652	73651	646;647	467;468;469	3	
DNSTMGYMMAKK	2	Acetyl (K);Oxidation (M)	1433.5989	0.59890726	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	1	1		By MS/MS	By MS/MS		13	0						7					1	6		47.246	37.897	2	4.5921E-05	20904	160513_QHF_FH_JSI11Kac_3	100.88	94.288			0.13724	0.13371	109.77	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13724	0.13371	109.77	3	2	Plateau	NaN	NaN	NaN	0	0	Median	15238000	11718000	3519600	0	0	0	616990	0	616990	14621000	11718000	2902600	0	0	0	8799	898	8311	54626;54627;54628;54629;54630;54631;54632	73653;73654;73655;73656;73657;73658;73659;73660	73656	646;647	467;468;469	8	
DNSTMGYMMAKK	2	Acetyl (K)	1417.604	0.60399264	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.4						4	1				1	3	1	62.885	52.948	2;3	2.2975E-06	29307	160513_QHF_FH_JSI11Kac_4	116.23	109.54			0.30954	0.30061	128.72	3	1	Median	NaN	NaN	NaN	0	0	Median	1.114	1.297	NaN	1	0	Median	0.17672	0.17309	78.066	2	1	Median	NaN	NaN	NaN	0	0	Median	22419000	17055000	5364000	0	0	0	5944400	2923500	3020900	16474000	14131000	2343100	0	0	0	8800	898	8311	54633;54634;54635;54636;54637	73661;73662;73663;73664	73663	646;647		4	
DNSTMGYMMAKK	2	Acetyl (K);3 Oxidation (M)	1465.5887	0.58873651	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	3	1				By MS/MS	12	0					1								1	21.813	14.828	2	0.037701	7762	160513_QHF_FH_JSI12Kac_2	35.414	35.414			0.47681	0.51395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47681	0.51395	NaN	1	0	Median	3145600	2050200	1095400	0	0	0	0	0	0	0	0	0	3145600	2050200	1095400	8801	898	8311	54638	73665	73665	646;647	467;468;469	0	
DNTIEHLLPLFLAQLK	1	Unmodified	1864.0458	0.045834566	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	4	3	5	5	101.93	99.897	2;3	3.4701E-17	51343	160513_QHF_FH_JSI11Kac_6	143.02	132.36			1.0014	1.0137	12.409	17	1	Median	1.1709	0.99059	9.1036	4	1	Linear	0.8338	1.0137	15.095	3	0	Median	1.0256	0.98018	14.106	5	0	Median	1.0014	1.0273	8.5925	5	0	Median	2403300000	1209000000	1194300000	366800000	161170000	205630000	433540000	225810000	207730000	989690000	517350000	472350000	613260000	304630000	308620000	8802	1345	8312	54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655	73666;73667;73668;73669;73670;73671;73672;73673;73674;73675;73676;73677;73678;73679;73680;73681;73682;73683;73684;73685;73686;73687;73688;73689;73690;73691;73692;73693;73694	73673			28	
DNTIMDLQTQLK	1	Unmodified	1418.7075	0.70752973	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				71.076	70.131	2	0.0001255	62351	160511_QHF_FH_JSI9i_1	101.93	82.167			0.61856	0.52474	NaN	1	1	Median	0.61856	0.52474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29396000	16874000	12522000	29396000	16874000	12522000	0	0	0	0	0	0	0	0	0	8803	3395	8313	54656	73695	73695			1	
DNTINLIHTFR	0	Unmodified	1342.6993	0.69934831	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			69.593	61.917	3	0.031011	34097	160513_QHF_FH_JSI10Kac_6	26.206	17.252			4.2812	5.1451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.2812	5.1451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41858000	13376000	28481000	0	0	0	41858000	13376000	28481000	0	0	0	0	0	0	8804	256	8314	54657	73696	73696			1	
DNTNEIYSGK	1	Unmodified	1139.5095	0.50948185	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	21.515	18.138	2	8.5641E-15	15832	160511_QHF_FH_JSI10i_1	167.67	140.42			0.92319	0.94927	7.3392	7	0	Median	1.2403	1.0097	NaN	1	0	Median	0.84337	0.98044	13.472	2	0	Median	1.0396	1.003	9.7129	2	0	Median	0.89987	0.94452	0.70871	2	0	Median	1350800000	667090000	683750000	283640000	127170000	156470000	366850000	198250000	168600000	368630000	151370000	217250000	331720000	190290000	141420000	8805	841	8315	54658;54659;54660;54661;54662;54663;54664	73697;73698;73699;73700;73701;73702;73703;73704;73705;73706;73707;73708	73702			12	
DNTRPGANSPEMWSEAIK	1	Unmodified	2001.9214	0.92143869	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	56.315	55.629	2;3	1.0338E-16	50624	160511_QHF_FH_JSI12i_1	136.2	127.04			0.92701	1.0872	16.11	9	2	Linear	1.1162	0.93397	1.3628	2	0	Median	0.86023	1.0427	27.36	3	1	Plateau	1.0429	1.0381	7.191	2	0	Median	0.85054	0.87938	11.255	2	1	Median	1345500000	693510000	652030000	251930000	122610000	129320000	411270000	212470000	198800000	507710000	270640000	237080000	174630000	87792000	86842000	8806	3828	8316	54665;54666;54667;54668;54669;54670;54671;54672;54673	73709;73710;73711;73712;73713;73714;73715;73716;73717;73718;73719;73720;73721	73711			13	
DNTSVYHISGK	1	Unmodified	1219.5833	0.5833155	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	1	2	22.817	22.083	2;3	0.00063456	19088	160511_QHF_FH_JSI10i_2	83.397	56.724			0.57411	0.64888	128.78	5	5	Median	0.93924	0.82167	NaN	1	1	Median	0.36593	0.43197	57.544	2	2	Median	2.5777	2.4664	NaN	1	1	Median	0.069528	0.077694	NaN	1	1	Median	86461000	52067000	34394000	18702000	13437000	5264700	41678000	26863000	14815000	17095000	3649000	13446000	8986500	8117800	868740	8807	4989	8317	54674;54675;54676;54677;54678;54679;54680	73722;73723;73724;73725;73726;73727;73728	73728			7	
DNTSVYHISGKK	2	Acetyl (K)	1389.6888	0.6888432	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		38.412	28.824	2	0.012357	17558	160513_QHF_FH_JSI11Kac_4	63.408	54.876			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3105100	3105100	0	0	0	0	0	0	0	3105100	3105100	0	0	0	0	8808	4989	8318	54681	73729	73729	3291		1	
DNTTLLTQVQTTMR	0	Oxidation (M)	1636.809	0.80903469	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		53.43	53.019	2	0.010632	48014	160511_QHF_FH_JSI11i_1	55.261	30.407			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8809	2441	8319	54682	73730	73730		1958	1	
DNTTLLTQVQTTMR	0	Unmodified	1620.8141	0.81412007	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	71.603	70.838	2	3.5278E-06	64407	160511_QHF_FH_JSI12i_1	122.46	101.68			1.4062	1.2834	24.777	2	1	Median	1.86	1.5291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0632	1.0771	NaN	1	1	Median	225530000	88985000	136540000	110210000	39164000	71046000	0	0	0	0	0	0	115320000	49821000	65498000	8810	2441	8319	54683;54684	73731;73732	73731			1	
DNVAEQLR	0	Unmodified	943.47231	0.47230849	3567	Q8N8N7	PTGR2	Prostaglandin reductase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.406	21.222	2	0.049485	17786	160511_QHF_FH_JSI9i_1	46.129	4.0196			8.679	7.1867	NaN	1	1	Median	8.679	7.1867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	364620000	52869000	311760000	364620000	52869000	311760000	0	0	0	0	0	0	0	0	0	8811	3567	8320	54685	73733	73733			1	
DNVDDPTGNFR	0	Unmodified	1248.5371	0.53709359	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.363	31.759	2	1.7994E-29	28331	160511_QHF_FH_JSI10i_1	185.6	173.75			0.97944	0.99058	9.4643	4	0	Median	1.4429	1.1909	NaN	1	0	Median	0.83863	0.97713	NaN	1	0	Median	1.0152	0.98596	NaN	1	0	Median	0.94492	0.99521	NaN	1	0	Median	1289400000	673880000	615480000	319730000	153740000	165990000	380030000	221950000	158090000	291760000	143480000	148280000	297830000	154710000	143120000	8812	2326	8321	54686;54687;54688;54689	73734;73735;73736;73737;73738;73739;73740;73741	73738			8	
DNVSSPGGATIHALHVLESGGFR	0	Unmodified	2320.156	0.15600673	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.47	3.16		5	11						1	6	6	3	2	83.287	82.139	3;4	2.3447E-38	72864	160511_QHF_FH_JSI11i_3	180.63	160.91			1.0364	1.1286	28	16	6	Median	1.481	1.2619	41.975	6	3	Median	1.0128	1.1685	23.16	5	2	Median	1.0116	0.95695	16.235	3	0	Plateau	0.96945	0.99574	6.3039	2	1	Median	1097400000	538970000	558470000	186560000	84634000	101930000	287960000	141910000	146060000	455300000	224530000	230760000	167610000	87896000	79719000	8813	1394	8322	54690;54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704;54705;54706	73742;73743;73744;73745;73746;73747;73748;73749;73750;73751;73752;73753;73754;73755;73756;73757;73758;73759;73760;73761;73762	73745			20	
DNWEELYNR	0	Unmodified	1237.5364	0.53636531	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.64	52.976	2	2.5064E-06	47783	160511_QHF_FH_JSI10i_1	126.24	107.92			1.3843	1.3959	12.43	4	1	Median	1.8327	1.5175	NaN	1	0	Median	0.96054	1.1345	NaN	1	0	Median	1.3939	1.3818	NaN	1	0	Median	1.3748	1.4102	NaN	1	1	Median	434310000	186620000	247690000	94443000	36774000	57669000	112910000	59457000	53454000	129790000	48553000	81239000	97164000	41832000	55333000	8814	1862	8323	54707;54708;54709;54710	73763;73764;73765;73766;73767	73767			5	
DNWLLAK	1	Unmodified	858.45995	0.45995289	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	55.588	55.099	2	0.023222	49716	160511_QHF_FH_JSI10i_1	58.981	25.243			0.72057	0.81366	20.922	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.59276	0.66611	NaN	1	0	Median	0.87594	0.85068	NaN	1	0	Median	0.55013	0.561	NaN	1	1	Median	107700000	59163000	48539000	0	0	0	32708000	17969000	14739000	42760000	21870000	20890000	32234000	19324000	12909000	8815	3675	8324	54711;54712;54713	73768;73769	73769			2	
DNWSPALTISK	1	Unmodified	1230.6245	0.62445203	1761	P51965;Q96LR5;Q969T4	UBE2E1;UBE2E2;UBE2E3	Ubiquitin-conjugating enzyme E2 E1;Ubiquitin-conjugating enzyme E2 E2;Ubiquitin-conjugating enzyme E2 E3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	62.56	61.926	2	0.00010927	56177	160511_QHF_FH_JSI11i_1	103.31	74.913			0.7737	0.85577	6.6319	4	0	Linear	1.1844	0.95632	NaN	1	0	Median	0.70303	0.82835	NaN	1	0	Median	0.97326	0.93883	NaN	1	0	Median	0.83316	0.87391	NaN	1	0	Median	854330000	458690000	395640000	175920000	78630000	97295000	232970000	145270000	87702000	213860000	116120000	97741000	231580000	118680000	112900000	8816	1761	8325	54714;54715;54716;54717;54718	73770;73771;73772;73773;73774;73775	73770			6	
DNWSSSDGKDDPIEVSK	2	Unmodified	1877.8279	0.82791546	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.373	41.906	3	1.7757E-06	37894	160511_QHF_FH_JSI10i_1	111.33	101.58			1.2573	1.2395	10.562	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.055	1.2418	NaN	1	0	Median	1.2573	1.2395	NaN	1	0	Median	1.3984	1.4897	NaN	1	0	Median	356200000	166570000	189630000	0	0	0	113700000	65849000	47847000	136830000	62539000	74296000	105670000	38186000	67486000	8817	3765	8326	54719;54720;54721	73776;73777;73778;73779;73780	73780			5	
DNWVSFMDTMLQMSILGSAK	1	Unmodified	2273.053	0.053046488	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		2							8	3	2	2	3	103.12	96.34	2;3	1.1267E-177	54140	160513_QHF_FH_JSI9Kac_6	297.56	271.91			0.87817	0.90516	27.272	9	4	Median	1.3638	1.1521	23.642	2	0	Median	0.69172	0.81739	14.425	2	1	Median	0.70921	0.69669	36.921	2	1	Median	0.91493	0.99681	22.326	3	2	Median	1028400000	484490000	543860000	312720000	101720000	210990000	622770000	328740000	294030000	33240000	20270000	12971000	59624000	33755000	25869000	8818	1650	8327	54722;54723;54724;54725;54726;54727;54728;54729;54730;54731	73781;73782;73783;73784;73785;73786;73787;73788;73789;73790;73791;73792;73793;73794	73785			14	
DNWVSFMDTMLQMSILGSAK	1	Oxidation (M)	2289.048	0.04796111	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	101.32	91.877	3	4.4303E-06	50601	160513_QHF_FH_JSI12Kac_6	76.817	67.998			1.375	1.4492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.375	1.4492	NaN	1	0	Median	52525000	22954000	29571000	0	0	0	0	0	0	0	0	0	52525000	22954000	29571000	8819	1650	8327	54732	73795	73795		1313	1	
DNYPQSVPR	0	Unmodified	1074.5094	0.50942227	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	24.181	22.048	2	0.00017327	19457	160511_QHF_FH_JSI12i_1	87.308	73.636			1.3687	1.3532	19.354	5	1	Median	1.5801	1.2894	NaN	1	0	Median	1.2401	1.4602	NaN	1	0	Median	1.402	1.367	1.4302	2	1	Median	0.85655	0.89885	NaN	1	0	Median	416600000	182860000	233730000	102420000	37243000	65181000	88650000	42706000	45944000	115950000	43412000	72539000	109570000	59503000	50068000	8820	100	8328	54733;54734;54735;54736;54737	73796;73797;73798;73799;73800;73801;73802;73803;73804	73799			9	
DNYSPGWK	1	Unmodified	965.4243	0.42429566	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		28.277	27.678	2	0.0018212	24506	160511_QHF_FH_JSI10i_1	84.743	66.976			1.2733	1.0463	32.821	3	1	Median	1.2733	1.0463	NaN	1	1	Median	1.4861	1.7244	NaN	1	0	Median	0.94499	0.92899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	509890000	240910000	268990000	109410000	46521000	62885000	208100000	96401000	111700000	192390000	97983000	94408000	0	0	0	8821	878	8329	54738;54739;54740;54741	73805;73806;73807;73808;73809;73810	73807			6	
DNYVPEVSALDQEIIEVDPDTK	1	Unmodified	2488.1857	0.18569468	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										1	3	2	101.1	101	2;3	8.9675E-18	91712	160511_QHF_FH_JSI10i_1	192.24	154.99			0.91255	0.93178	10.152	6	3	Median	NaN	NaN	NaN	0	0	Median	0.79606	0.92877	NaN	1	0	Median	0.90469	0.87985	12.505	3	2	Median	0.92169	0.95731	1.1642	2	1	Median	1185000000	599940000	585080000	0	0	0	155860000	83645000	72218000	621340000	339260000	282080000	407810000	177030000	230780000	8822	914	8330	54742;54743;54744;54745;54746;54747	73811;73812;73813;73814;73815;73816;73817;73818;73819	73819			9	
DPAAVTESK	1	Unmodified	916.45018	0.45017606	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.04	7				3					2	3	2	3	13.817	10.48	2	0.000166	9697	160511_QHF_FH_JSI12i_1	92.838	60.228			2.2345	2.1284	113.17	7	6	Median	2.2532	1.8145	NaN	1	1	Median	1.5788	1.8181	178.51	3	3	Median	2.2345	2.1284	NaN	1	1	Median	2.8413	3.012	37.974	2	1	Median	1124400000	549580000	574810000	261630000	128940000	132690000	321380000	183550000	137830000	320460000	161930000	158530000	220920000	75162000	145760000	8823	3712	8331	54748;54749;54750;54751;54752;54753;54754;54755;54756;54757	73820;73821;73822;73823;73824;73825;73826;73827;73828;73829	73823			10	
DPAEGDGAQPEETPR	0	Unmodified	1567.675	0.67504363	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	18.252	16.448	2	1.7946E-65	13878	160511_QHF_FH_JSI9i_1	232.42	227.8			0.92355	0.88664	13.261	5	0	Median	0.92355	0.75475	NaN	1	0	Median	0.79262	0.91376	NaN	1	0	Median	0.88161	0.8473	6.4187	2	0	Median	1.0325	1.0704	NaN	1	0	Median	357560000	182920000	174630000	104180000	48709000	55468000	85411000	48687000	36724000	103560000	55539000	48022000	64407000	29988000	34419000	8824	2569	8332	54758;54759;54760;54761;54762	73830;73831;73832;73833;73834;73835;73836;73837;73838	73838			9	
DPAEGDGAQPEETPRDGDKPEETQGK	2	Unmodified	2752.206	0.20598921	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	18.699	18.205	3;4	8.7491E-58	15449	160511_QHF_FH_JSI11i_1	202.73	200.29			0.91641	0.92826	10.747	8	0	Median	0.96919	0.79722	6.6797	2	0	Median	0.87636	1.0291	3.5987	2	0	Median	0.91641	0.89647	2.043	2	0	Median	0.92145	0.97142	3.541	2	0	Median	2511300000	1266900000	1244400000	342020000	151080000	190940000	792210000	426000000	366210000	715940000	348800000	367130000	661080000	341000000	320090000	8825	2569	8333	54763;54764;54765;54766;54767;54768;54769;54770	73839;73840;73841;73842;73843;73844;73845;73846;73847;73848;73849;73850;73851;73852;73853;73854;73855	73840			17	
DPANFQYPAESVLAYK	1	Unmodified	1811.873	0.87301516	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	82.548	82.115	2;3	4.1027E-30	74682	160511_QHF_FH_JSI11i_1	220.9	196.11			0.96124	0.93728	23.945	9	2	Median	1.1743	0.96337	3.8833	2	0	Median	0.96124	1.1605	40.854	3	2	Median	0.97147	0.93103	3.6061	2	0	Median	0.80658	0.84702	11.776	2	0	Median	1500400000	752450000	747970000	382150000	138330000	243830000	417120000	234080000	183040000	392160000	196870000	195290000	308990000	183170000	125820000	8826	1080	8334	54771;54772;54773;54774;54775;54776;54777;54778;54779	73856;73857;73858;73859;73860;73861;73862;73863;73864;73865;73866;73867;73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878	73857			23	
DPANYILHAVLVHSGDNHGGHYVVYLNPK	1	Unmodified	3198.5999	0.59991562	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				84.917	76.305	4	1.1661E-21	41925	160513_QHF_FH_JSI9Kac_6	158.06	140.63			0.52046	0.43957	NaN	1	1	Median	0.52046	0.43957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141550000	110590000	30959000	141550000	110590000	30959000	0	0	0	0	0	0	0	0	0	8827	3922	8335	54780	73879	73879			1	
DPAQPMSPGEATQSGARPADR	0	Unmodified	2137.9811	0.98107883	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.017	26.438	3	1.8768E-06	23293	160511_QHF_FH_JSI10i_1	77.391	72.389			0.82144	0.8343	5.2469	4	0	Median	1.0588	0.86265	NaN	1	0	Median	0.69892	0.80689	NaN	1	0	Median	0.90555	0.88725	NaN	1	0	Median	0.74516	0.79534	NaN	1	0	Median	483670000	263890000	219780000	133240000	63050000	70188000	120760000	69540000	51223000	121750000	66292000	55459000	107920000	65012000	42909000	8828	4361	8336	54781;54782;54783;54784	73880;73881;73882;73883;73884;73885	73884			6	
DPAVGFLETISPGYSIHTYLWR	0	Unmodified	2521.2642	0.2641602	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				95.535	86.522	3	7.439E-22	49074	160513_QHF_FH_JSI9Kac_6	134.86	119.91			1.239	1.0792	NaN	1	0	Median	1.239	1.0792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66593000	26453000	40140000	66593000	26453000	40140000	0	0	0	0	0	0	0	0	0	8829	802	8337	54785	73886	73886			1	
DPAYLKDPK	2	Acetyl (K)	1087.555	0.55497548	5587	Q9Y3D5	MRPS18C	28S ribosomal protein S18c, mitochondrial	yes	yes	1	0	0	1		By MS/MS			12	0					1						1			45.85	36.819	2	0.055252	16462	160513_QHF_FH_JSI10Kac_2	50.04	33.264			0.41564	0.45438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41564	0.45438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	905620	775750	129880	0	0	0	905620	775750	129880	0	0	0	0	0	0	8830	5587	8338	54786	73887	73887			1	
DPDAQPGGELMLGGTDSK	1	Unmodified	1786.8043	0.80434324	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	54.876	54.216	2	7.7838E-06	49242	160511_QHF_FH_JSI12i_1	102.5	90.237			0.66561	0.70274	60.494	5	4	Median	0.94289	0.79628	NaN	1	1	Median	0.62023	0.70274	NaN	1	1	Median	0.62659	0.60243	NaN	1	0	Median	1.2982	1.3612	94.059	2	2	Median	140190000	82292000	57898000	30290000	19412000	10878000	23286000	16604000	6681400	36481000	20255000	16227000	50133000	26021000	24112000	8831	869	8339	54787;54788;54789;54790;54791;54792;54793	73888;73889;73890;73891;73892;73893;73894	73891			7	
DPDASKPEDWDER	1	Unmodified	1558.6536	0.65357991	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.41	26.171	2	0.008081	23147	160511_QHF_FH_JSI12i_1	64.878	27.766			0.89538	0.943	6.0281	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86335	0.98406	NaN	1	1	Median	0.9286	0.90365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66492000	39461000	27032000	0	0	0	25736000	16539000	9197100	40756000	22921000	17835000	0	0	0	8832	1297	8340	54794;54795;54796	73895;73896;73897	73896			3	
DPDINMHPFFFALGK	1	Unmodified	1747.8392	0.83921261	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	90.384	81.229	3	3.7612E-05	45481	160513_QHF_FH_JSI11Kac_6	93.237	75.32			1.339	1.4113	34.969	3	0	Median	1.0228	0.872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7402	1.7213	NaN	1	0	Median	1.339	1.4113	NaN	1	0	Median	78004000	29907000	48097000	21303000	11300000	10003000	0	0	0	38281000	12063000	26218000	18420000	6544400	11876000	8833	415	8341	54797;54798;54799	73898;73899;73900	73898			3	
DPDSISSPIR	0	Unmodified	1085.5353	0.53530267	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.702	37.008	2	0.0018807	32662	160511_QHF_FH_JSI9i_1	63.216	51.705			0.96053	0.94793	19.692	3	0	Median	0.93481	0.77851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96053	0.94793	NaN	1	0	Median	1.1164	1.1543	NaN	1	0	Median	235120000	98356000	136760000	66872000	26890000	39982000	0	0	0	94027000	39279000	54748000	74218000	32186000	42031000	8834	5745	8342	54800;54801;54802;54803	73901;73902;73903;73904;73905	73905			5	
DPDVTVAPVFLLGESSVEYGK	1	Unmodified	2221.1154	0.11543027	5673	Q9Y5Q0	FADS3	Fatty acid desaturase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	100.8	100.73	3	0.035827	89271	160511_QHF_FH_JSI10i_2	22.01	7.0819			0.86874	0.91841	15.118	4	0	Median	1.1657	0.98678	NaN	1	0	Median	0.90131	1.0968	NaN	1	0	Median	0.75552	0.77978	NaN	1	0	Median	0.83735	0.85478	NaN	1	0	Median	331430000	175100000	156330000	61050000	28745000	32305000	93452000	51519000	41933000	76432000	37578000	38854000	100500000	57263000	43237000	8835	5673	8343	54804;54805;54806;54807	73906;73907	73906			2	
DPEAPIFQVADYGIVADLFK	1	Unmodified	2207.115	0.11503634	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.28	9	6	3						1	2	4	7	6	103.16	102.59	2;3	2.1207E-18	94003	160511_QHF_FH_JSI11i_1	198.87	193.71			0.92057	0.96932	19.986	19	8	Median	0.97114	0.79935	11.962	2	1	Median	0.94842	1.114	12.066	4	1	Linear	0.96671	0.94326	18.992	7	4	Median	1.0077	1.0792	25.029	6	2	Median	1028700000	524850000	503810000	100860000	53054000	47802000	285240000	147840000	137400000	319010000	168100000	150920000	323550000	155860000	167690000	8836	1041	8344	54808;54809;54810;54811;54812;54813;54814;54815;54816;54817;54818;54819;54820;54821;54822;54823;54824;54825;54826	73908;73909;73910;73911;73912;73913;73914;73915;73916;73917;73918;73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934	73910			27	
DPEGFVGHPVNAFK	1	Unmodified	1512.7361	0.73612775	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								3	3	2	2	56.374	55.427	2;3	2.2872E-08	48494	160511_QHF_FH_JSI9i_2	101.38	76.999			0.9115	0.89539	31.894	8	3	Median	0.71385	0.60271	41.32	2	1	Median	0.5778	0.71268	34.054	2	2	Median	0.9115	0.91627	5.0406	2	0	Median	0.97614	1.0971	2.7439	2	0	Median	530170000	303080000	227090000	73652000	45457000	28195000	113600000	65159000	48445000	175030000	99563000	75472000	167880000	92901000	74978000	8837	1035	8345	54827;54828;54829;54830;54831;54832;54833;54834;54835;54836	73935;73936;73937;73938;73939;73940;73941;73942;73943;73944;73945;73946;73947;73948;73949	73941			14	
DPELFLGLASNILNFITSSMLNSR	0	Unmodified	2651.3629	0.36288796	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			108.2	102.48	3	2.2306E-05	60647	160513_QHF_FH_JSI10Kac_6	98.121	85.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11938000	11938000	0	0	0	0	11938000	11938000	0	0	0	0	0	0	0	8838	2947	8346	54837	73950	73950			1	
DPENFPFVVLGNK	1	Unmodified	1474.7456	0.7456298	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	93.738	93.376	2;3	3.9113E-23	84939	160511_QHF_FH_JSI11i_1	182.64	163.97			0.93231	0.91326	14.233	8	0	Median	0.96633	0.79986	5.9852	2	0	Median	0.75117	0.87206	18.214	2	0	Median	0.97295	0.94145	15.985	2	0	Median	1.0022	1.042	5.9735	2	0	Median	1103900000	625160000	478780000	233400000	118130000	115270000	260270000	161520000	98755000	293130000	140960000	152170000	317130000	204550000	112580000	8839	1728	8347	54838;54839;54840;54841;54842;54843;54844;54845;54846	73951;73952;73953;73954;73955;73956;73957;73958;73959;73960;73961;73962;73963;73964;73965;73966;73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977;73978;73979;73980;73981;73982;73983	73954			33	
DPEQEVEK	1	Unmodified	972.44001	0.4400053	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	12.631	12.233	2	0.011142	9873	160511_QHF_FH_JSI11i_1	54.157	42.789			1.1795	1.23	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1795	1.23	NaN	1	1	Median	46065000	24896000	21170000	0	0	0	0	0	0	0	0	0	46065000	24896000	21170000	8840	4521	8348	54847;54848	73984;73985	73984			2	
DPESNINSDNEK	1	Unmodified	1360.5743	0.57426695	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	11.924	11.575	2	9.7196E-11	9317	160511_QHF_FH_JSI12i_1	145.46	131.25			0.93653	1.0921	19.236	5	2	Median	1.3937	1.1392	NaN	1	0	Median	0.93653	1.0921	NaN	1	0	Median	0.98343	0.94099	31.338	2	2	Median	0.84754	0.87464	NaN	1	0	Median	251470000	131940000	119530000	47811000	19300000	28510000	51514000	26804000	24709000	93627000	52791000	40836000	58523000	33046000	25477000	8841	4681	8349	54849;54850;54851;54852;54853	73986;73987;73988;73989;73990;73991;73992;73993	73988			8	
DPFAHLPK	1	Unmodified	923.4865	0.48650199	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.95	4.54	2	12	4					3		4	4	7	6	41.286	38.802	2;3	0.00047584	34057	160511_QHF_FH_JSI10i_2	83.265	31.41			0.99107	0.97076	83.754	17	11	Median	1.8398	1.5379	65.07	2	1	Median	0.9131	1.119	94.158	3	1	Median	0.99107	0.96535	85.684	7	5	Median	0.75793	0.85065	81.96	5	4	Median	7450400000	3146700000	4303700000	575330000	204820000	370510000	1484700000	610290000	874410000	3924200000	1418500000	2505700000	1466200000	913090000	553080000	8842	1284	8350	54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869;54870;54871;54872;54873;54874	73994;73995;73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006;74007;74008;74009;74010;74011;74012;74013;74014;74015;74016;74017;74018;74019;74020;74021	74016			28	
DPFAPLHKPPRPQPPEVAFK	2	Acetyl (K)	2309.2321	0.23207221	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	77.31	68.903	3;4	2.7964E-06	35975	160513_QHF_FH_JSI12Kac_6	85.932	78.486			0.97668	0.95119	46.838	8	1	Median	0.94777	0.81046	16.195	2	0	Median	1.4639	1.7378	86.072	2	1	Median	0.89211	0.84958	16.815	2	0	Median	1.0252	1.0903	9.1814	2	0	Median	1089500000	513830000	575690000	250330000	135710000	114620000	365770000	126380000	239390000	235080000	133660000	101430000	238330000	118080000	120250000	8843	190	8351	54875;54876;54877;54878;54879;54880;54881;54882	74022;74023;74024;74025;74026;74027;74028;74029;74030;74031;74032;74033;74034;74035	74031	99		14	
DPFFKMLNR	1	Unmodified	1166.5906	0.59064948	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			51.401	49.836	3	0.0054759	41543	160511_QHF_FH_JSI10i_3	40.002	28.469			1.5275	1.7623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5275	1.7623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67731000	20331000	47400000	0	0	0	67731000	20331000	47400000	0	0	0	0	0	0	8844	2900	8352	54883	74036	74036			1	
DPFGSRGEFEGFVAVVNKAMSAKFER	2	2 Acetyl (K)	2958.4334	0.43342714	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	2	0	0	3		By MS/MS			16	0									1		1			80.258	74.662	4	0.0067069	40888	160513_QHF_FH_JSI10Kac_6	48.867	8.4861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88748000	88748000	0	0	0	0	88748000	88748000	0	0	0	0	0	0	0	8845	5119	8353	54884	74037	74037	3312;3313		1	
DPFNPFELTNHAVLLVGYGTDSASGMDYWIVK	1	Unmodified	3555.7021	0.70205701	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			98.617	92.897	3;4	9.6907E-79	54372	160513_QHF_FH_JSI10Kac_6	196.93	189.24			0.5604	0.66789	8.747	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5604	0.66789	8.747	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	261280000	163360000	97926000	0	0	0	261280000	163360000	97926000	0	0	0	0	0	0	8846	1806	8354	54885;54886	74038;74039	74038			2	
DPFYMGLYQK	1	Unmodified	1260.5849	0.5848954	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	71.86	71.375	2	0.00026595	64685	160511_QHF_FH_JSI10i_1	91.318	76.644			1.0787	0.87377	30.876	5	5	Plateau	1.9101	1.6168	NaN	1	1	Median	0.74578	0.88008	NaN	1	1	Median	0.98191	0.93878	11.166	2	2	Median	1.5147	1.5751	NaN	1	1	Median	310120000	153600000	156520000	37795000	13264000	24531000	73394000	38708000	34686000	147840000	77430000	70408000	51094000	24197000	26897000	8847	1225	8355	54887;54888;54889;54890;54891	74040;74041;74042;74043;74044;74045	74043			6	
DPGLVDQLVK	1	Unmodified	1082.5972	0.59717465	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	68.933	67.489	2	0.0030977	60423	160511_QHF_FH_JSI9i_1	70.908	40.654			0.48166	0.55115	215.43	8	8	Median	0.5507	0.45128	296.54	2	2	Median	0.47941	0.55115	237.46	2	2	Median	0.61825	0.6031	269.76	2	2	Median	0.515	0.54143	326.96	2	2	Median	1013100000	529760000	483350000	235760000	119970000	115780000	271200000	151770000	119420000	274130000	142630000	131500000	232030000	115380000	116640000	8848	1667	8356	54892;54893;54894;54895;54896;54897;54898;54899;54900;54901	74046;74047;74048;74049;74050;74051;74052;74053;74054;74055;74056;74057;74058;74059	74058			14	
DPGMGAMGGMGGGMGGGMF	0	Oxidation (M)	1689.6078	0.60777416	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	16									5	3	4	4	81.363	80.85	2	2.4347E-09	74044	160511_QHF_FH_JSI10i_1	123.8	123.8			1.1029	1.0317	14.387	16	2	Median	1.2153	1.0258	13.99	5	0	Median	0.7645	0.86241	18.559	3	1	Median	1.1149	1.0703	3.2997	4	1	Median	1.0419	1.0905	16.896	4	0	Median	829520000	384090000	445420000	255410000	110180000	145230000	134600000	77014000	57584000	231550000	106410000	125140000	207960000	90488000	117470000	8849	980	8357	54902;54903;54904;54905;54906;54907;54908;54909;54910;54911;54912;54913;54914;54915;54916;54917	74060;74061;74062;74063;74064;74065;74066;74067;74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078;74079;74080;74081;74082	74071		546;547;548;549	23	
DPGMGAMGGMGGGMGGGMF	0	Unmodified	1673.6129	0.61285954	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	95.216	94.915	2;3	2.7637E-09	86120	160511_QHF_FH_JSI12i_1	160.18	160.18			1.0539	1.0257	12.087	8	0	Median	1.3035	1.0685	12.491	2	0	Median	0.72186	0.85796	12.879	2	0	Median	1.061	1.0257	2.9428	2	0	Median	1.0395	1.0808	1.5844	2	0	Median	4113300000	1917500000	2195700000	1016800000	303140000	713670000	1362600000	843950000	518660000	1116600000	468060000	648560000	617230000	302370000	314860000	8850	980	8357	54918;54919;54920;54921;54922;54923;54924;54925	74083;74084;74085;74086;74087;74088;74089;74090;74091;74092;74093;74094;74095;74096;74097	74088			15	
DPGNTEPVK	1	Unmodified	955.46108	0.4610751	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12	0					2							1	1	12.388	5.1085	2	0.019576	4115	160513_QHF_FH_JSI11Kac_2	48.283	33.132			0.70128	0.70456	5.1683	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78958	0.73079	NaN	1	0	Median	0.62286	0.67928	NaN	1	0	Median	6128800	3846900	2281900	0	0	0	0	0	0	3516700	2292900	1223800	2612100	1553900	1058200	8851	2795	8358	54926;54927	74098;74099	74098			2	
DPGSVGDTIPSAELVK	1	Unmodified	1583.8043	0.80426689	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	65.109	64.494	2	4.0127E-07	57342	160511_QHF_FH_JSI9i_1	90.926	75.953			1.0314	1.1048	30.948	4	0	Median	2.3701	1.9391	NaN	1	0	Median	1.0062	1.1907	NaN	1	0	Median	1.0526	0.99253	NaN	1	0	Median	1.0105	1.0251	NaN	1	0	Median	83504000	38397000	45107000	17080000	6720500	10359000	16019000	7082900	8935800	23404000	12431000	10972000	27002000	12162000	14840000	8852	2588	8359	54928;54929;54930;54931;54932	74100;74101;74102;74103	74103			4	
DPGVLDR	0	Unmodified	770.39227	0.39226725	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				3	3	2	3	20.729	17.407	2	0.013176	16717	160511_QHF_FH_JSI10i_1	71.296	55.659			0.11515	0.12206	268.84	11	10	Median	1.0563	0.88637	309.39	3	2	Median	0.084626	0.10246	326.82	3	3	Median	0.98463	0.95806	383.78	2	2	Median	1.2914	1.3675	283.17	3	3	Plateau	21151000000	11196000000	9954300000	5002800000	2408100000	2594700000	5201400000	3066000000	2135400000	5389000000	2982200000	2406700000	5557600000	2740100000	2817400000	8853	1387	8360	54933;54934;54935;54936;54937;54938;54939;54940;54941;54942;54943	74104;74105;74106;74107;74108;74109;74110;74111;74112;74113;74114	74108			11	
DPIDVNYEK	1	Unmodified	1091.5135	0.5135046	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	36.132	35.525	2	0.00023031	32220	160511_QHF_FH_JSI12i_1	84.615	73.546			1.137	1.1155	15.014	4	0	Median	1.4776	1.2261	NaN	1	0	Median	0.83658	0.96052	NaN	1	0	Median	1.0466	1.0149	NaN	1	0	Median	1.2354	1.3165	NaN	1	0	Median	1185900000	572270000	613630000	201500000	97623000	103880000	324740000	158510000	166230000	372510000	169390000	203120000	287140000	146740000	140400000	8854	939	8361	54944;54945;54946;54947	74115;74116;74117;74118	74116			4	
DPIPYLPPLEK	1	Unmodified	1280.7016	0.70163972	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	83.096	82.693	2	8.8174E-05	73372	160511_QHF_FH_JSI9i_1	89.171	47.723			0.87483	0.93123	12.596	5	0	Median	0.90336	0.73111	NaN	1	0	Median	0.79214	0.90991	10.478	2	0	Median	1.0033	0.98739	NaN	1	0	Median	0.87483	0.93123	NaN	1	0	Median	1598400000	822030000	776410000	403450000	211410000	192030000	405440000	224000000	181440000	454230000	207670000	246560000	335310000	178940000	156380000	8855	910	8362	54948;54949;54950;54951;54952	74119;74120;74121;74122;74123;74124;74125;74126;74127;74128;74129;74130;74131;74132	74129			14	
DPIVMGVTVEAGQVK	1	Unmodified	1541.8123	0.81232916	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	71.443	71.034	2	0.00044124	64419	160511_QHF_FH_JSI10i_1	91.858	49.114			0.65708	0.71772	45.279	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84037	0.98856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51376	0.52108	NaN	1	1	Median	54111000	41421000	12690000	0	0	0	28594000	21123000	7471500	0	0	0	25516000	20298000	5218100	8856	454	8363	54953;54954	74133;74134	74134			2	
DPIVNVWYSVNGER	0	Unmodified	1646.8053	0.80526994	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	1	3	86.934	86.517	2	3.4689E-06	78807	160511_QHF_FH_JSI12i_1	128.85	119.41			0.69247	0.807	15.727	8	7	Median	1.0706	0.94623	8.6581	2	2	Median	0.66174	0.78111	7.277	3	2	Median	0.84902	0.84822	NaN	1	1	Median	0.62819	0.66345	15.254	2	2	Median	338070000	197100000	140980000	32562000	16883000	15679000	175990000	104300000	71688000	28799000	12079000	16720000	100730000	63836000	36889000	8857	2391	8364	54955;54956;54957;54958;54959;54960;54961;54962;54963	74135;74136;74137;74138;74139;74140;74141;74142;74143;74144	74136			10	
DPIYVGGLPR	0	Unmodified	1085.5869	0.58694431	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				58.19	57.053	2	0.020218	50673	160511_QHF_FH_JSI9i_1	49.423	38.955			0.54875	0.46918	NaN	1	1	Median	0.54875	0.46918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32022000	19708000	12314000	32022000	19708000	12314000	0	0	0	0	0	0	0	0	0	8858	1257	8365	54964	74145	74145			1	
DPLAVDK	1	Unmodified	756.40177	0.4017693	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	2	2	23.16	21.661	2	0.014605	18909	160511_QHF_FH_JSI11i_1	66.073	43.054			2.2719	2.4318	86.666	8	8	Median	1.4255	1.1772	104.18	2	2	Median	0.95761	1.134	106.3	2	2	Median	3.0672	3.024	6.7535	2	2	Median	1.0342	1.1076	126.67	2	2	Median	11063000000	5400500000	5662900000	3111600000	1348000000	1763600000	3410700000	1825800000	1584900000	1426900000	611990000	814910000	3114300000	1614800000	1499500000	8859	1923	8366	54965;54966;54967;54968;54969;54970;54971;54972	74146;74147;74148;74149;74150;74151;74152;74153;74154	74146			9	
DPLAVDKIMK	2	Acetyl (K);Oxidation (M)	1186.6268	0.62676022	1923	P60903	S100A10	Protein S100-A10	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13	0						2					1		1	63.251	53.91	2	0.008028	27486	160513_QHF_FH_JSI10Kac_3	67.563	48.292			1.5854	1.787	10.17	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4041	1.663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7901	1.9202	NaN	1	1	Median	7219300	2384900	4834400	0	0	0	2887400	1131900	1755500	0	0	0	4331800	1253000	3078900	8860	1923	8367	54973;54974	74155;74156	74156	1929	1594	2	
DPLELFR	0	Unmodified	888.47052	0.47051757	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	75.287	75.114	2	0.023935	68140	160511_QHF_FH_JSI12i_1	49.358	15.62			0.36857	0.39774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36857	0.39774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10521000	8142900	2378200	0	0	0	10521000	8142900	2378200	0	0	0	0	0	0	8861	2730	8368	54975;54976	74157;74158	74157			2	
DPLFYLDAQK	1	Unmodified	1208.6077	0.60773933	3092	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			74.685	74.503	2	0.0078528	67438	160511_QHF_FH_JSI10i_1	60.398	35.543			0.38989	0.45776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.38989	0.45776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28048000	21751000	6296600	0	0	0	28048000	21751000	6296600	0	0	0	0	0	0	8862	3092	8369	54977	74159	74159			1	
DPLLASGTDGVGTK	1	Unmodified	1329.6776	0.67760981	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.62	7				6	2				2	4	5	4	47.45	43.587	2	3.4811E-06	39308	160511_QHF_FH_JSI10i_1	127.52	113.75			0.73218	0.72481	120.98	11	11	Median	0.83872	0.68286	129.86	2	2	Median	1.1541	1.3057	141.36	3	3	Median	0.73218	0.72481	124.63	3	3	Median	0.65837	0.71649	164.73	3	3	Median	2253800000	1207000000	1046800000	566070000	290250000	275820000	657740000	385050000	272690000	423680000	213370000	210310000	606260000	318310000	287950000	8863	1205	8370	54978;54979;54980;54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991;54992	74160;74161;74162;74163;74164;74165;74166;74167;74168;74169;74170;74171;74172;74173;74174	74168			15	
DPLLLAIIPK	1	Unmodified	1091.6954	0.69543213	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	101.66	101.6	2	0.00031035	90155	160511_QHF_FH_JSI10i_2	90.657	81.443			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17442000	17442000	0	0	0	0	17442000	17442000	0	0	0	0	0	0	0	8864	4831	8371	54993;54994	74175;74176	74176			2	
DPLLLSGTHVMEGSGR	0	Unmodified	1667.8301	0.83010449	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	3	2	3	61.755	60.809	2;3	9.0707E-08	53008	160511_QHF_FH_JSI11i_2	163.99	157.46			1.9742	2.126	117.67	8	8	Median	2.5905	2.235	78.836	2	2	Median	1.3812	1.6894	155.53	3	3	Median	0.97505	0.97493	142.76	2	2	Median	5.2632	5.6301	NaN	1	1	Median	412110000	158040000	254070000	86317000	13201000	73116000	127680000	52643000	75039000	112050000	62629000	49416000	86065000	29563000	56501000	8865	1168	8372	54995;54996;54997;54998;54999;55000;55001;55002;55003;55004	74177;74178;74179;74180;74181;74182;74183;74184;74185;74186;74187;74188	74184			12	
DPLNPIK	1	Unmodified	795.44905	0.44905385	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.675	34.069	2	0.0084038	30019	160511_QHF_FH_JSI9i_1	83.614	51.144			1.03	1.0672	5.6934	4	0	Linear	1.1591	0.94426	NaN	1	0	Median	0.8887	1.0517	NaN	1	0	Median	1.0447	1.0187	NaN	1	0	Median	1.0155	1.0758	NaN	1	0	Median	2961900000	1437600000	1524300000	618940000	256700000	362240000	769640000	396340000	373300000	766290000	386840000	379450000	807080000	397750000	409330000	8866	2641	8373	55005;55006;55007;55008	74189;74190;74191;74192;74193;74194;74195;74196;74197	74196			9	
DPLPPLDPQAIKPILK	2	Unmodified	1754.0342	0.034207247	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	88.344	87.776	3	0.0020476	78021	160511_QHF_FH_JSI9i_1	59.634	54.316			1.0458	0.95369	8.4799	3	3	Median	1.0647	0.86225	NaN	1	1	Median	0.77927	0.95369	NaN	1	1	Median	1.0458	1.0205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	157160000	89236000	67922000	50683000	26370000	24313000	23481000	15116000	8365000	82993000	47749000	35244000	0	0	0	8867	3860	8374	55009;55010;55011;55012;55013	74198;74199;74200;74201;74202;74203	74202			6	
DPLPTIASR	0	Unmodified	968.5291	0.52909508	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.649	41.276	2	0.01301	37267	160511_QHF_FH_JSI11i_1	56.81	35.039			1.0463	1.1016	21.011	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0985	1.2781	NaN	1	0	Median	0.99662	0.94954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79511000	32765000	46746000	0	0	0	41258000	15947000	25310000	38254000	16818000	21436000	0	0	0	8868	4558	8375	55014;55015	74204;74205	74204			2	
DPLQVHLPLR	0	Unmodified	1186.6822	0.68224168	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.35	63.802	3	0.014296	55653	160511_QHF_FH_JSI11i_2	33.866	26.221			0.48809	0.47646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48809	0.47646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10347000	7643000	2704400	0	0	0	0	0	0	10347000	7643000	2704400	0	0	0	8869	3635	8376	55016	74206	74206			1	
DPLSANHSLKPLPSVPEEK	2	Unmodified	2057.0793	0.079319539	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	1	2	53.207	52.627	3;4	2.2419E-09	45065	160511_QHF_FH_JSI12i_3	98.816	89.401			1.0512	1.0125	20.068	6	3	Median	1.0855	0.92458	14.812	2	2	Median	0.82961	0.99858	NaN	1	1	Median	1.0036	0.95515	NaN	1	0	Median	1.2778	1.3076	19.892	2	0	Median	620700000	268300000	352390000	76972000	33302000	43670000	52610000	30414000	22196000	128230000	60370000	67862000	362880000	144220000	218670000	8870	2366	8377	55017;55018;55019;55020;55021;55022	74207;74208;74209;74210;74211;74212;74213	74211			7	
DPLVNLINK	1	Unmodified	1024.5917	0.59169534	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.8	68.232	2	1.4006E-05	61862	160511_QHF_FH_JSI10i_1	111.01	96.85			0.98293	1.0693	8.1759	4	0	Linear	1.0859	0.90588	NaN	1	0	Median	0.8658	0.99706	NaN	1	0	Median	1.1222	1.0981	NaN	1	0	Median	0.88972	0.95298	NaN	1	0	Median	416350000	200280000	216070000	85856000	35329000	50527000	116480000	61677000	54798000	122220000	54603000	67618000	91796000	48668000	43128000	8871	3749	8378	55023;55024;55025;55026	74214;74215;74216;74217;74218;74219;74220;74221;74222	74220			9	
DPLYIGLR	0	Unmodified	945.52837	0.5283668	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	4.26	6	1					1			1	1	4	2	61.943	61.351	2	0.0064953	55531	160511_QHF_FH_JSI11i_1	71.296	48.804			0.81486	0.95942	55.151	7	5	Median	2.8971	2.3246	NaN	1	1	Median	0.81486	0.95942	NaN	1	0	Median	0.77396	0.79525	58.524	3	2	Median	0.71538	0.7529	52.164	2	2	Median	338000000	161410000	176600000	40984000	12663000	28321000	46620000	25915000	20705000	152640000	68328000	84313000	97757000	54501000	43256000	8872	1616	8379	55027;55028;55029;55030;55031;55032;55033;55034	74223;74224;74225;74226;74227;74228;74229;74230;74231	74223			9	
DPMLLSGTHVMEGSGR	0	Unmodified	1685.7865	0.78652511	1239;2758;2177	P23634;Q01814;Q16720	ATP2B4;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								1		2	3	57.672	56.665	2;3	6.6244E-07	49127	160511_QHF_FH_JSI11i_2	124.86	107.49			1.2599	1.343	101.28	3	2	Plateau	0.23404	0.19809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3976	1.388	NaN	1	1	Median	0.76456	0.85105	NaN	1	0	Median	107420000	54994000	52427000	9787900	8963800	824090	0	0	0	50364000	24879000	25485000	47269000	21151000	26118000	8873	1239;2177;2758	8380	55035;55036;55037;55038;55039;55040	74232;74233;74234;74235;74236;74237	74237			5	
DPNAFLFDHLLTLK	1	Unmodified	1642.8719	0.87189295	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	101.58	101.48	2;3	2.3116E-06	87321	160511_QHF_FH_JSI12i_2	126.16	111.81			0.90228	1.128	19.261	6	2	Linear	0.98457	0.84013	NaN	1	0	Median	0.71359	0.87795	32.697	2	1	Median	0.85666	0.87744	9.2167	2	1	Median	1.0784	1.1591	NaN	1	0	Median	1026500000	552490000	473970000	118200000	62274000	55924000	281610000	154370000	127240000	390120000	223110000	167000000	236530000	112740000	123790000	8874	3222	8381	55041;55042;55043;55044;55045;55046	74238;74239;74240;74241;74242;74243;74244;74245;74246	74239			9	
DPNAFLFDHLLTLKPVK	2	Unmodified	1967.088	0.088033731	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.19		8	6						3	2	5	5	5	99.141	97.623	3;4	2.5141E-16	89382	160511_QHF_FH_JSI10i_2	163.51	157.93			1.1566	1.1732	31.919	17	6	Median	1.2974	1.1047	25.174	2	1	Median	0.66599	0.80585	37.346	5	3	Median	1.1566	1.1732	20.859	5	1	Median	1.3823	1.4305	16.3	5	1	Median	3970200000	1990300000	1979900000	261520000	126550000	134970000	728930000	402810000	326120000	1859300000	981140000	878200000	1120400000	479770000	640600000	8875	3222	8382	55047;55048;55049;55050;55051;55052;55053;55054;55055;55056;55057;55058;55059;55060;55061;55062;55063	74247;74248;74249;74250;74251;74252;74253;74254;74255;74256;74257;74258;74259;74260;74261;74262;74263;74264;74265;74266;74267;74268;74269	74263			23	
DPNIVIAK	1	Unmodified	868.50182	0.5018177	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	41.245	36.384	2	0.0015998	32356	160511_QHF_FH_JSI9i_1	87.323	58.174			0.98038	1.0173	11.942	8	0	Median	0.92993	0.79856	NaN	1	0	Median	0.87974	0.99251	1.7484	2	0	Median	1.0711	1.0561	3.5458	2	0	Median	1.0171	1.0537	10.404	3	0	Median	30197000000	15022000000	15175000000	4146600000	2454600000	1691900000	10167000000	5159600000	5007400000	9228600000	4004800000	5223800000	6655000000	3403000000	3252000000	8876	1344	8383	55064;55065;55066;55067;55068;55069;55070;55071	74270;74271;74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285;74286;74287;74288;74289;74290;74291	74284			22	
DPNLLLSVSK	1	Unmodified	1084.6128	0.61282471	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	67.411	66.797	2	0.012161	60845	160511_QHF_FH_JSI12i_1	55.401	41.947			0.29332	0.30328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29332	0.30328	NaN	1	1	Median	19182000	13631000	5550700	0	0	0	0	0	0	0	0	0	19182000	13631000	5550700	8877	540	8384	55072	74292	74292			1	
DPNNDFRK	1	Unmodified	1004.4676	0.46755746	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	8.6826	8.2604	2;3	0.0016373	6078	160511_QHF_FH_JSI9i_2	87.181	65.05			0.96812	0.99319	53.261	9	4	Median	1.0629	0.89256	15.107	2	0	Median	0.76302	0.91517	20.178	2	0	Median	0.90228	0.89128	101.54	2	2	Median	1.7089	1.8707	48.594	3	2	Median	1980600000	980130000	1000500000	363180000	149300000	213880000	506660000	277110000	229540000	453550000	251780000	201780000	657250000	301950000	355300000	8878	4367	8385	55073;55074;55075;55076;55077;55078;55079;55080;55081;55082	74293;74294;74295;74296;74297;74298;74299;74300;74301;74302;74303;74304	74300			12	
DPNNLFMVR	0	Unmodified	1104.5386	0.53861391	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.382	61.749	2	3.9541E-06	54899	160511_QHF_FH_JSI9i_1	121.05	111.46			0.96177	0.86658	14.773	4	0	Median	1.0548	0.8828	NaN	1	0	Median	0.67922	0.78015	NaN	1	0	Median	0.88534	0.85067	NaN	1	0	Median	1.0448	1.1035	NaN	1	0	Median	1225500000	611560000	613930000	344230000	163520000	180710000	325010000	161590000	163410000	307920000	167970000	139950000	248340000	118480000	129860000	8879	2370	8386	55083;55084;55085;55086	74305;74306;74307;74308;74309;74310;74311;74312	74311			8	
DPNNLLNDWSQK	1	Unmodified	1442.679	0.6790068	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.726	67.141	2	4.3609E-05	59761	160511_QHF_FH_JSI9i_1	120.77	101.42			1.0573	0.93273	19.542	4	0	Median	1.2234	0.98276	NaN	1	0	Median	0.72815	0.86314	NaN	1	0	Median	0.91372	0.88525	NaN	1	0	Median	1.2618	1.3216	NaN	1	0	Median	777170000	413320000	363850000	177910000	81093000	96818000	191140000	116630000	74514000	209640000	109670000	99976000	198480000	105940000	92540000	8880	110	8387	55087;55088;55089;55090	74313;74314;74315;74316;74317;74318;74319	74319			7	
DPNSGLPK	1	Unmodified	826.41848	0.418482	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	14.475	13.967	2	0.024604	11702	160511_QHF_FH_JSI12i_1	42.869	30.438			1.0722	0.82396	18.729	3	0	Plateau	1.1564	0.95729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80224	0.77761	NaN	1	0	Median	1.0722	1.1301	NaN	1	0	Median	466140000	234380000	231760000	159630000	70779000	88847000	0	0	0	165660000	97796000	67862000	140850000	65806000	75049000	8881	5346	8388	55091;55092;55093	74320;74321	74321			2	
DPNTQSVGNPQR	0	Unmodified	1311.6167	0.61674089	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.632	11.378	2	3.1238E-05	9098	160511_QHF_FH_JSI10i_1	113.93	94.832			2.3809	2.4376	45.66	3	3	Median	NaN	NaN	NaN	0	0	Median	2.5886	3.0043	NaN	1	1	Median	1.2753	1.2532	NaN	1	1	Median	2.3809	2.4376	NaN	1	1	Median	184460000	49754000	134710000	0	0	0	71334000	12668000	58666000	44340000	17894000	26446000	68791000	19192000	49599000	8882	549	8389	55094;55095;55096	74322;74323;74324	74324			3	
DPNTYFIVGTAMVYPEEAEPK	1	Unmodified	2370.109	0.10896469	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	100.84	100.73	2;3	3.1125E-32	91425	160511_QHF_FH_JSI10i_1	211.7	184.05			1.0953	1.0812	9.1915	7	1	Median	1.2003	0.98485	11.456	2	0	Median	0.95688	1.1292	10.098	2	1	Median	1.1554	1.1279	5.1207	2	0	Median	1.0241	1.0812	NaN	1	0	Median	734730000	374730000	360000000	182040000	79834000	102210000	231700000	139770000	91937000	177910000	74900000	103010000	143070000	80226000	62845000	8883	2734	8390	55097;55098;55099;55100;55101;55102;55103	74325;74326;74327;74328;74329;74330;74331;74332;74333;74334	74332			10	
DPNVVGQLAK	1	Unmodified	1039.5662	0.56620887	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		52.819	43.28	2	0.046133	23577	160513_QHF_FH_JSI11Kac_3	49.418	40.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1375000	0	1375000	0	0	0	0	0	0	1375000	0	1375000	0	0	0	8884	4122	8391	55104	74335	74335			1	
DPPANLFEDMDLNK	1	Unmodified	1617.7345	0.73447277	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	86.825	86.333	2;3	1.1021E-14	78388	160511_QHF_FH_JSI10i_1	160.15	141.88			1.0235	1.0058	15.02	9	1	Median	1.0548	0.85797	22.262	3	1	Median	0.84531	1.0094	0.77962	2	0	Median	1.0324	0.98282	3.2657	2	0	Median	1.0378	1.0823	1.4096	2	0	Median	1043100000	517770000	525320000	253490000	121890000	131600000	274970000	149310000	125660000	275490000	139770000	135720000	239150000	106800000	132340000	8885	3973	8392	55105;55106;55107;55108;55109;55110;55111;55112;55113	74336;74337;74338;74339;74340;74341;74342;74343;74344;74345;74346;74347;74348;74349;74350;74351;74352;74353;74354;74355;74356;74357;74358;74359;74360;74361;74362;74363;74364;74365	74353			30	
DPPHNNFFFFDGMK	1	Unmodified	1711.7453	0.74531222	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							3	2	2	3	86.694	86.095	2;3	1.1715E-05	75581	160511_QHF_FH_JSI11i_2	101.39	89.24			0.97861	1.0314	7.8967	9	2	Median	1.1642	0.99689	4.8155	2	1	Median	0.83631	1.0038	4.6716	2	1	Median	1.091	1.0892	14.327	2	0	Median	0.97649	1.0396	7.9613	3	0	Median	489720000	239560000	250160000	73736000	32500000	41236000	103500000	50289000	53214000	147250000	72457000	74792000	165230000	84310000	80919000	8886	5233	8393	55114;55115;55116;55117;55118;55119;55120;55121;55122;55123	74366;74367;74368;74369;74370;74371;74372;74373;74374;74375;74376;74377;74378;74379;74380	74373			15	
DPPLAAVTTAVQELLR	0	Unmodified	1692.941	0.94103514	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.36	103.26	2	0.00035493	91079	160511_QHF_FH_JSI11i_2	82.543	55.87			0.6624	0.64924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6624	0.64924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11274000	6856100	4417700	0	0	0	0	0	0	11274000	6856100	4417700	0	0	0	8887	2677	8394	55124	74381	74381			1	
DPPSWSVLAGHSR	0	Unmodified	1407.6895	0.6895119	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	3	1	1	54.108	53.132	2;3	4.6888E-05	44360	160511_QHF_FH_JSI10i_3	80.706	77.483			1.3258	1.2622	29.793	6	1	Median	1.3258	1.092	10.398	2	1	Median	0.98329	1.1659	28.345	2	0	Median	1.4762	1.3555	NaN	1	0	Median	2.1188	2.1783	NaN	1	0	Median	504030000	230030000	274000000	93468000	35059000	58409000	196430000	114100000	82325000	139070000	52393000	86673000	75071000	28477000	46593000	8888	5616	8395	55125;55126;55127;55128;55129;55130;55131	74382;74383;74384;74385;74386;74387;74388;74389;74390	74384			8	
DPPTWSVLAGHSHTVSDSIK	1	Unmodified	2133.0491	0.049082043	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	61.735	61.547	3;4	0.00018247	54672	160511_QHF_FH_JSI11i_3	54.271	44.483			1.0925	1.1075	11.629	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0189	0.91562	NaN	1	0	Median	1.0954	1.119	1.4655	2	0	Median	144150000	65526000	78625000	0	0	0	0	0	0	34018000	11661000	22357000	110130000	53866000	56268000	8889	5628	8396	55132;55133;55134	74391;74392;74393;74394	74391			4	
DPQALSEHLK	1	Unmodified	1136.5826	0.58258722	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.93	5	10	1				4			6	4	5	5	33.358	30.544	2;3	1.0136E-05	27114	160511_QHF_FH_JSI10i_2	114.97	105.06			0.75089	0.71068	178.68	17	16	Median	0.34121	0.29169	130.53	4	4	Median	0.49919	0.61268	157.45	4	3	Median	0.23328	0.23633	214.09	4	4	Median	1.2047	1.3729	238.5	5	5	Median	2655400000	1703200000	952180000	486430000	325990000	160440000	764170000	526920000	237250000	808450000	506780000	301670000	596310000	343500000	252820000	8890	1386	8397	55135;55136;55137;55138;55139;55140;55141;55142;55143;55144;55145;55146;55147;55148;55149;55150;55151;55152;55153;55154	74395;74396;74397;74398;74399;74400;74401;74402;74403;74404;74405;74406;74407;74408;74409;74410;74411;74412;74413;74414;74415;74416;74417;74418;74419;74420;74421	74421			27	
DPQFAEDYIFK	1	Unmodified	1371.6347	0.63468237	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	80.239	79.691	2	8.8797E-06	71129	160511_QHF_FH_JSI9i_1	125.75	107.48			2.9501	3.3514	166.34	5	5	Median	0.81028	0.65464	183.75	2	2	Median	2.7884	3.3514	NaN	1	1	Median	5.8454	5.6662	NaN	1	1	Median	15.096	15.624	NaN	1	1	Median	275370000	75751000	199620000	109160000	48809000	60353000	64748000	15083000	49664000	60076000	8135800	51940000	41382000	3722900	37659000	8891	4628	8398	55155;55156;55157;55158;55159	74422;74423;74424;74425;74426	74426			5	
DPQFQKLQQWYR	1	Acetyl (K)	1677.8263	0.82633974	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.321	71.784	2	0.0011005	37997	160513_QHF_FH_JSI11Kac_5	84.268	70.362			0.21904	0.20642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21904	0.20642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	794970	710160	84811	0	0	0	0	0	0	794970	710160	84811	0	0	0	8892	856	8399	55160	74427	74427	531		1	
DPQLVPILIEAAR	0	Unmodified	1433.8242	0.82421447	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.17	101.07	2	4.0391E-05	89168	160511_QHF_FH_JSI9i_1	117.09	87.424			7.5162	7.8026	262.25	5	5	Median	1.9199	1.576	368.53	2	2	Median	1.6432	1.9288	347.72	2	2	Median	NaN	NaN	NaN	0	0	Median	7.5162	7.8026	NaN	1	1	Median	545020000	301440000	243580000	100710000	42967000	57747000	160750000	95788000	64963000	180140000	105610000	74533000	103410000	57069000	46340000	8893	2701	8400	55161;55162;55163;55164;55165;55166;55167;55168	74428;74429;74430;74431;74432;74433;74434;74435	74434			8	
DPQQEDFLQGR	0	Unmodified	1331.6106	0.61059288	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	41.483	40.838	2	3.2106E-07	36773	160511_QHF_FH_JSI10i_1	119.68	97.688			1.3893	1.2892	17.299	4	3	Median	1.3225	1.083	NaN	1	1	Median	1.0053	1.168	NaN	1	0	Median	1.4596	1.4229	NaN	1	1	Median	1.5308	1.5749	NaN	1	1	Median	366510000	166950000	199550000	70074000	29984000	40089000	104160000	53879000	50280000	90313000	36780000	53533000	101960000	46310000	55650000	8894	2947	8401	55169;55170;55171;55172;55173;55174	74436;74437;74438;74439;74440;74441;74442	74440			7	
DPQQPAQQQQPAQQPK	1	Unmodified	1815.8864	0.88637381	581	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				13.916	13.005	3	0.0057942	10253	160511_QHF_FH_JSI9i_1	40.857	29.417			1.261	1.0093	NaN	1	0	Median	1.261	1.0093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24777000	10697000	14080000	24777000	10697000	14080000	0	0	0	0	0	0	0	0	0	8895	581	8402	55175	74443	74443			1	
DPSASPGDAGEQAIR	0	Unmodified	1469.6746	0.6746497	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	27.248	26.34	2	6.8309E-05	22830	160511_QHF_FH_JSI9i_1	115.33	102.37			0.94335	0.86184	13.231	2	0	Median	0.97046	0.78486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91699	0.94636	NaN	1	0	Median	123920000	53938000	69980000	59214000	25365000	33848000	0	0	0	0	0	0	64704000	28572000	36132000	8896	1139	8403	55176;55177	74444;74445;74446;74447	74447			4	
DPSAVAK	1	Unmodified	686.3599	0.35990449	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.75	4.76	3				1					2	1		1	7.8403	4.9996	2	0.035052	5792	160511_QHF_FH_JSI12i_1	50.966	9.4637		+	2.0871	2.0462	113.83	4	3	Median	2.0871	2.0462	50.311	2	1	Median	5.4612	6.3622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41013	0.43615	NaN	1	1	Median	5661900000	2179000000	3483000000	1968900000	741760000	1227100000	1441100000	277500000	1163600000	0	0	0	2251900000	1159700000	1092200000	8897	856;75	8404	55178;55179;55180;55181	74448;74449;74450;74451	74448			3	
DPSAVAKHFVALSTNTTK	2	Acetyl (K)	1928.0003	0.0003409361	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1		By matching	By MS/MS		15.3	0.471								4	2		1	5		80.69	70.663	2;3	9.8958E-12	38756	160513_QHF_FH_JSI11Kac_6	125.23	113.97			0.14166	0.13264	123.14	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2096	1.4246	NaN	1	0	Median	0.19828	0.19135	58.782	2	0	Median	NaN	NaN	NaN	0	0	Median	229780000	198130000	31651000	0	0	0	4257100	1802800	2454300	225520000	196330000	29197000	0	0	0	8898	856	8405	55182;55183;55184;55185;55186;55187	74452;74453;74454;74455;74456;74457;74458	74452	532		7	
DPSEEAAVLQYASLVGQK	1	Unmodified	1903.9527	0.95272204	667	O95260	ATE1	Arginyl-tRNA--protein transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	94.988	94.687	2;3	1.2782E-06	86212	160511_QHF_FH_JSI11i_1	88.075	79.346			1.3093	1.0701	50.841	5	2	Median	1.2428	1.0468	3.1159	2	1	Median	0.40774	0.45616	NaN	1	1	Median	1.8047	1.7435	NaN	1	0	Median	1.411	1.396	NaN	1	0	Median	63874000	31468000	32405000	20763000	7993300	12770000	17910000	13182000	4727900	12572000	5366900	7204800	12629000	4926300	7702500	8899	667	8406	55188;55189;55190;55191;55192;55193;55194;55195	74459;74460;74461;74462;74463;74464;74465;74466;74467;74468	74461			10	
DPSFRPTAK	1	Unmodified	1017.5243	0.52434406	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	15.508	15.54	3	0.0062054	12721	160511_QHF_FH_JSI11i_3	47.603	30.932			1.3664	1.3186	7.1612	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3474	1.2535	NaN	1	0	Median	1.3856	1.3871	NaN	1	1	Median	226570000	101710000	124850000	0	0	0	0	0	0	103800000	40737000	63061000	122770000	60977000	61793000	8900	5206	8407	55196;55197	74469;74470;74471	74469			3	
DPSKQYGLK	2	Acetyl (K)	1076.5502	0.55022446	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		38.042	29.049	2	0.046815	16842	160513_QHF_FH_JSI11Kac_3	51.346	32.906			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1494200	1494200	0	0	0	0	0	0	0	1494200	1494200	0	0	0	0	8901	5475	8408	55198	74472	74472			1	
DPSQIDNNEPYMK	1	Unmodified	1549.6719	0.67187251	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	39.969	39.343	2	2.7365E-06	35483	160511_QHF_FH_JSI11i_1	121.68	97.336			1.2336	1.2295	36.131	5	3	Median	1.2336	1.0164	NaN	1	0	Median	1.0486	1.2295	NaN	1	0	Median	1.5984	1.54	NaN	1	1	Median	1.0636	1.118	64.96	2	2	Median	209030000	101930000	107090000	33784000	13345000	20439000	52186000	26426000	25760000	48254000	23334000	24920000	74801000	38829000	35972000	8902	2391	8409	55199;55200;55201;55202;55203	74473;74474;74475;74476;74477;74478	74473			6	
DPSQLNSK	1	Unmodified	887.43486	0.43486035	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8.33	5.19	1				2						1	2		10.664	6.9129	2	0.019879	6931	160511_QHF_FH_JSI10i_1	56.81	37.107			0.58883	0.60624	94.229	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0331	1.1804	NaN	1	1	Median	0.33562	0.31137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	122140000	75586000	46559000	0	0	0	118480000	72813000	45664000	3668100	2773100	894960	0	0	0	8903	5107	8410	55204;55205;55206	74479;74480;74481	74481			3	
DPSQQELPR	0	Unmodified	1068.52	0.51998696	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	5.58	3				3	1				1	2	2	2	24.124	19.589	2	0.00021314	16619	160511_QHF_FH_JSI9i_1	101.25	82.47			0.80467	0.92608	17.722	7	4	Median	1.355	1.1344	NaN	1	1	Median	0.79057	0.93525	1.3935	2	1	Median	1.063	1.036	23.625	2	1	Median	0.74464	0.78583	11.833	2	1	Median	1023600000	469460000	554170000	345860000	136230000	209630000	301060000	160700000	140360000	18334000	8233300	10100000	358380000	164300000	194080000	8904	1650	8411	55207;55208;55209;55210;55211;55212;55213	74482;74483;74484;74485;74486;74487;74488;74489	74488			8	
DPSVVVR	0	Unmodified	770.42865	0.42865276	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	23.367	19.845	2	0.012077	17724	160511_QHF_FH_JSI12i_1	75.311	30.7			1.4605	1.4363	68.456	7	4	Median	3.0957	2.5532	NaN	1	1	Median	1.1051	1.2967	57.272	2	1	Median	1.2722	1.255	19.088	2	1	Median	2.2452	2.3797	131.35	2	1	Median	7117600000	927640000	6189900000	1535000000	199710000	1335300000	1603100000	237850000	1365200000	1452200000	255370000	1196900000	2527300000	234710000	2292500000	8905	2585	8412	55214;55215;55216;55217;55218;55219;55220	74490;74491;74492;74493;74494;74495;74496	74491			7	
DPSYFVFLYLTK	1	Unmodified	1491.765	0.76496826	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	2	1	1	99.251	92.5	2	7.8031E-19	50946	160513_QHF_FH_JSI11Kac_6	149.96	127.97			0.76226	0.86773	19.634	5	1	Median	1.3067	1.093	NaN	1	0	Median	0.67658	0.8108	16.609	2	1	Median	0.90187	0.86773	NaN	1	0	Median	0.63465	0.66618	NaN	1	0	Median	800160000	429480000	370680000	133490000	63622000	69872000	167840000	83524000	84311000	276520000	142610000	133910000	222310000	139720000	82588000	8906	2835	8413	55221;55222;55223;55224;55225	74497;74498;74499;74500;74501;74502;74503;74504;74505	74497			9	
DPTVSQTFMLDR	0	Unmodified	1408.6657	0.66566492	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		63.407	62.783	2	0.00012112	56911	160511_QHF_FH_JSI11i_1	85.963	76.531			0.91684	0.79219	21.231	3	0	Median	0.91684	0.76009	NaN	1	0	Median	0.95249	1.1189	NaN	1	0	Median	0.82817	0.79219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	140260000	74217000	66039000	45792000	24453000	21339000	47029000	26013000	21016000	47435000	23751000	23685000	0	0	0	8907	5376	8414	55226;55227;55228	74506;74507;74508	74506			3	
DPVADPNK	1	Unmodified	854.4134	0.41339662	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.033	8.9103	2	0.0049375	6618	160511_QHF_FH_JSI11i_1	67.169	41.275			0.87947	0.87056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87947	0.87056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199030000	115680000	83353000	0	0	0	0	0	0	199030000	115680000	83353000	0	0	0	8908	1566	8415	55229	74509	74509			1	
DPVEIQTLVNK	1	Unmodified	1254.682	0.68196691	4872	Q9HD34	LYRM4	LYR motif-containing protein 4	yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		63.419	62.976	2	8.8002E-06	57262	160511_QHF_FH_JSI11i_1	125.7	110.06			1.2297	1.1907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2297	1.1907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76911000	40080000	36832000	0	0	0	0	0	0	76911000	40080000	36832000	0	0	0	8909	4872	8416	55230;55231	74510;74511	74510			2	
DPVHTVSLQQFIYEK	1	Unmodified	1802.9203	0.9202997	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	78.552	77.732	3	3.2435E-05	67059	160511_QHF_FH_JSI12i_2	96.247	80.861			0.92631	0.98009	8.5416	4	0	Median	1.0778	0.95284	NaN	1	0	Median	0.91594	1.1205	NaN	1	0	Median	0.93433	0.92224	NaN	1	0	Median	0.91837	1.0081	NaN	1	0	Median	202720000	109710000	93015000	32695000	18067000	14627000	44083000	24214000	19868000	65510000	33926000	31583000	60435000	33498000	26937000	8910	5323	8417	55232;55233;55234;55235	74512;74513	74512			2	
DPVPGYSVPAAEHSTITAWGK	1	Unmodified	2182.0695	0.069483134	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	68.992	68.297	3	1.5747E-13	59737	160511_QHF_FH_JSI11i_2	123.53	116.32			0.90694	1.0228	17.145	9	3	Median	1.0024	0.84714	26.648	2	0	Median	0.85145	1.0152	5.6432	2	1	Median	0.90694	0.90836	22.125	3	2	Median	1.0028	1.0763	1.8765	2	0	Median	1362900000	693550000	669340000	205310000	105600000	99710000	338100000	169050000	169050000	492420000	261130000	231290000	327050000	157770000	169290000	8911	1566	8418	55236;55237;55238;55239;55240;55241;55242;55243;55244	74514;74515;74516;74517;74518;74519;74520;74521;74522;74523;74524;74525;74526;74527;74528;74529;74530;74531	74530			18	
DPVPLFK	1	Unmodified	814.45889	0.45889025	2347	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.331	53.668	2	0.01639	47603	160511_QHF_FH_JSI9i_1	63.148	63.148			0.86999	0.89197	4.8965	4	0	Median	1.1275	0.92453	NaN	1	0	Median	0.73924	0.87533	NaN	1	0	Median	0.84892	0.8278	NaN	1	0	Median	0.8916	0.90894	NaN	1	0	Median	321840000	157630000	164210000	80784000	36079000	44705000	73970000	39600000	34369000	82891000	38524000	44368000	84191000	43424000	40767000	8912	2347	8419	55245;55246;55247;55248	74532;74533;74534;74535	74535			4	
DPVQCSR	0	Unmodified	860.38105	0.38105064	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	5.8229	5.5932	2	0.01549	3588	160511_QHF_FH_JSI10i_1	64.567	46.719			0.73207	0.7119	31.997	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9882	1.2012	NaN	1	0	Median	0.73207	0.70969	NaN	1	0	Median	1.1828	1.2656	NaN	1	0	Median	833960000	417610000	416350000	0	0	0	274730000	121890000	152840000	286560000	164600000	121970000	272660000	131120000	141540000	8913	4276	8420	55249;55250;55251	74536	74536			1	
DPVQEAWAEDVDLR	0	Unmodified	1641.7635	0.76346471	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.48	0.732	28	8	6							14	14	7	7	76.99	76.332	2;3	1.0127E-30	67065	160511_QHF_FH_JSI9i_1	196.38	170.95			1.0148	0.9928	24.538	35	16	Median	1.1063	0.91132	26.716	11	5	Median	0.92423	1.067	24.692	12	8	Median	0.94951	0.92578	17.526	6	2	Median	1.0286	1.0968	26.349	6	1	Median	13246000000	6977700000	6268200000	3272200000	1527000000	1745300000	4202200000	2346800000	1855400000	3102500000	1726300000	1376200000	2668900000	1377600000	1291300000	8914	1055	8421	55252;55253;55254;55255;55256;55257;55258;55259;55260;55261;55262;55263;55264;55265;55266;55267;55268;55269;55270;55271;55272;55273;55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284;55285;55286;55287;55288;55289;55290;55291;55292;55293	74537;74538;74539;74540;74541;74542;74543;74544;74545;74546;74547;74548;74549;74550;74551;74552;74553;74554;74555;74556;74557;74558;74559;74560;74561;74562;74563;74564;74565;74566;74567;74568;74569;74570;74571;74572;74573;74574;74575;74576;74577;74578;74579;74580;74581;74582;74583;74584;74585;74586;74587;74588;74589;74590;74591;74592;74593;74594;74595;74596;74597;74598;74599;74600;74601;74602;74603;74604;74605;74606	74577			70	
DPVSAAVPAPGR	0	Unmodified	1135.5986	0.59857163	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.053	37.455	2	0.00016456	33848	160511_QHF_FH_JSI12i_1	82.749	70.981			0.55968	0.57773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55968	0.57773	NaN	1	0	Median	74016000	50445000	23571000	0	0	0	0	0	0	0	0	0	74016000	50445000	23571000	8915	3029	8422	55294	74607	74607			1	
DPVSIEER	0	Unmodified	943.46108	0.4610751	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	24.585	22.449	2	0.0012187	19293	160511_QHF_FH_JSI9i_1	92.439	52.897			0.97491	0.9364	15.966	5	0	Median	1.033	0.8308	NaN	1	0	Median	0.97491	1.1502	NaN	1	0	Median	0.98434	0.96029	21.867	2	0	Median	0.87564	0.9364	NaN	1	0	Median	1071500000	514400000	557140000	259670000	94462000	165210000	257090000	132060000	125030000	292870000	156910000	135960000	261900000	130960000	130940000	8916	1867	8423	55295;55296;55297;55298;55299	74608;74609;74610;74611;74612;74613;74614	74613			7	
DPVYTFSISQNPFPIENR	0	Unmodified	2123.0324	0.032369346	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	96.354	96.074	2;3	1.0489E-07	87170	160511_QHF_FH_JSI11i_1	155.98	144			0.98166	0.94868	12.374	6	0	Median	0.98166	0.78594	3.0838	2	0	Median	0.79165	0.92353	NaN	1	0	Median	1.0555	1.0197	4.3119	2	0	Median	0.93288	0.97451	NaN	1	0	Median	225160000	117350000	107820000	38143000	18729000	19414000	47976000	30650000	17325000	79878000	37605000	42273000	59166000	30361000	28805000	8917	3686	8424	55300;55301;55302;55303;55304;55305	74615;74616;74617;74618;74619;74620;74621;74622;74623;74624	74617			10	
DPYALDVPNTAFGR	0	Unmodified	1534.7416	0.74160705	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		72.976	72.642	2	0.0017719	66159	160511_QHF_FH_JSI11i_1	74.76	31.125			1.828	1.7618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.828	1.7618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46149000	15706000	30444000	0	0	0	0	0	0	46149000	15706000	30444000	0	0	0	8918	4195	8425	55306	74625	74625			1	
DPYTGQQISLFQAMQK	1	Unmodified	1853.8982	0.89818405	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	83.643	83.177	2;3	5.1566E-07	73946	160511_QHF_FH_JSI9i_1	165.58	133.06			1.561	1.5522	22.943	8	0	Median	1.5523	1.2793	30.836	2	0	Median	1.285	1.5055	32.531	2	0	Median	1.5753	1.5205	4.5606	2	0	Median	1.6967	1.7968	22.348	2	0	Median	342310000	137220000	205090000	67811000	26688000	41122000	109360000	49419000	59946000	83226000	31788000	51438000	81907000	29323000	52584000	8919	2636	8426	55307;55308;55309;55310;55311;55312;55313;55314	74626;74627;74628;74629;74630;74631;74632;74633;74634;74635;74636;74637;74638;74639;74640;74641;74642	74641			17	
DQAAEGINLIK	1	Unmodified	1170.6245	0.62445203	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	53.195	52.528	2	1.1449E-09	46686	160511_QHF_FH_JSI9i_1	135.86	106.77			1.2628	1.1601	10.004	4	0	Median	1.3608	1.1329	NaN	1	0	Median	0.90308	1.0583	NaN	1	0	Median	1.3661	1.3419	NaN	1	0	Median	1.1719	1.188	NaN	1	0	Median	557550000	259440000	298120000	163900000	63374000	100520000	140950000	71247000	69705000	120620000	51050000	69569000	132090000	73768000	58320000	8920	2104	8427	55315;55316;55317;55318;55319	74643;74644;74645;74646;74647;74648;74649	74649			7	
DQAENEDGAQENTFSMDPQLER	0	Unmodified	2523.0456	0.045589162	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	59.216	58.602	2;3	7.127E-46	53111	160511_QHF_FH_JSI11i_1	199.49	197.07			1.146	1.1125	19.285	6	0	Median	1.1062	0.90135	NaN	1	0	Median	1.2203	1.4564	NaN	1	0	Median	1.2191	1.1577	20.412	2	0	Median	1.0679	1.1011	16.239	2	0	Median	317670000	139480000	178190000	52145000	28595000	23550000	53912000	23854000	30058000	125250000	46955000	78295000	86366000	40075000	46291000	8921	1711	8428	55320;55321;55322;55323;55324;55325	74650;74651;74652;74653;74654;74655	74650			5	
DQAHFYFSQMPQIFDK	1	Unmodified	2000.9091	0.90908309	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		93.343	92.931	3	5.8831E-05	81712	160511_QHF_FH_JSI11i_2	64.454	54.666			0.70801	0.76426	13.842	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58731	0.693	NaN	1	1	Median	0.85351	0.84285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43905000	24292000	19613000	0	0	0	17383000	9674100	7709200	26522000	14618000	11904000	0	0	0	8922	2690	8429	55326;55327	74656;74657	74656			2	
DQAIVSAVANR	0	Unmodified	1142.6044	0.60438529	4441	Q9BUI4	POLR3C	DNA-directed RNA polymerase III subunit RPC3	yes	yes	0	0	0	0			By MS/MS		13	0						2						2		50.483	40.996	2	0.03621	22583	160513_QHF_FH_JSI11Kac_3	50.292	35.626			0.51003	0.54534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51003	0.54534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	866700	628510	238190	0	0	0	0	0	0	866700	628510	238190	0	0	0	8923	4441	8430	55328;55329	74658;74659	74658			2	
DQALKALR	1	Acetyl (K)	955.54508	0.5450795	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	45.572	36.542	2	0.013697	20480	160513_QHF_FH_JSI11Kac_3	74.127	29.68			0.21349	0.23232	111.86	2	2	Median	NaN	NaN	NaN	0	0	Median	0.45005	0.51238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10127	0.10534	NaN	1	1	Median	2809700	2418900	390720	0	0	0	1681000	1352300	328740	0	0	0	1128700	1066700	61983	8924	1573	8431	55330;55331;55332	74660;74661;74662	74660	1587		3	
DQAVENILVSPVVVASSLGLVSLGGK	1	Unmodified	2550.4269	0.42686843	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	5.13	11	8	4						4	6	7	6	8	103.2	101.88	2;3;4	1.5123E-195	94224	160511_QHF_FH_JSI11i_1	317	298.17			1.0316	0.95738	24.088	27	4	Median	1.1128	0.92298	20.501	6	1	Median	0.71521	0.82386	13.196	7	2	Median	1.0555	1.0489	31.401	6	1	Median	1.0706	1.1112	10.843	8	0	Median	5973700000	3079700000	2893900000	743970000	346450000	397520000	2147100000	1242800000	904330000	1365500000	631990000	733520000	1717000000	858470000	858570000	8925	1706	8432	55333;55334;55335;55336;55337;55338;55339;55340;55341;55342;55343;55344;55345;55346;55347;55348;55349;55350;55351;55352;55353;55354;55355;55356;55357;55358;55359	74663;74664;74665;74666;74667;74668;74669;74670;74671;74672;74673;74674;74675;74676;74677;74678;74679;74680;74681;74682;74683;74684;74685;74686;74687;74688;74689;74690;74691;74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703;74704;74705	74668			43	
DQAVFPQNGLVVSSVDVQSVEPVDQR	0	Unmodified	2811.4039	0.40390115	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	91.151	90.747	3	4.3226E-09	82618	160511_QHF_FH_JSI12i_1	65.155	58.928			0.96595	0.94334	11.901	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0781	1.0262	NaN	1	0	Median	0.86546	0.86721	NaN	1	1	Median	42346000	22366000	19980000	0	0	0	0	0	0	25338000	12255000	13083000	17008000	10112000	6896800	8926	2573	8433	55360;55361	74706;74707;74708	74708			3	
DQAVMISGESGAGK	1	Unmodified	1348.6293	0.62927941	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2						2	3	1	32.668	29.482	2	5.515E-05	26415	160511_QHF_FH_JSI10i_1	144.57	117.46			0.92872	0.91321	87.104	6	5	Median	NaN	NaN	NaN	0	0	Median	1.1495	1.341	101.17	2	2	Median	1.2205	1.2086	81.361	3	2	Median	0.35424	0.37229	NaN	1	1	Median	451520000	218480000	233040000	0	0	0	214410000	92659000	121750000	114680000	54303000	60377000	122430000	71516000	50912000	8927	100	8434	55362;55363;55364;55365;55366;55367	74709;74710;74711;74712;74713;74714;74715	74714			7	
DQAWKTLK	2	Acetyl (K)	1030.5447	0.54474515	539	O75528	TADA3	Transcriptional adapter 3	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	54.737	44.149	2	0.0027481	25028	160513_QHF_FH_JSI12Kac_4	95.502	57.943			1.2144	1.3095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2144	1.3095	NaN	1	0	Median	19812000	11699000	8113000	0	0	0	0	0	0	0	0	0	19812000	11699000	8113000	8928	539	8435	55368	74716;74717	74716	281		2	
DQDAIETDAMIK	1	Unmodified	1348.618	0.61804602	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.991	49.325	2	0.00018472	44759	160511_QHF_FH_JSI12i_1	139.86	109.29			1.7086	1.8249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7086	1.8249	NaN	1	1	Median	92783000	31486000	61298000	0	0	0	0	0	0	0	0	0	92783000	31486000	61298000	8929	1430	8436	55369	74718	74718			1	
DQDELNPYAAWR	0	Unmodified	1476.6634	0.66335673	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	65.219	64.743	2	2.0029E-06	58872	160511_QHF_FH_JSI12i_1	101.48	75.543			0.96515	1.0489	11.083	3	3	Median	NaN	NaN	NaN	0	0	Median	0.90083	1.0489	NaN	1	1	Median	0.96515	0.94463	NaN	1	1	Median	1.1317	1.1789	NaN	1	1	Median	124750000	64033000	60717000	0	0	0	41464000	23446000	18018000	42099000	22666000	19433000	41187000	17921000	23266000	8930	346	8437	55370;55371;55372;55373	74719;74720;74721;74722	74721			4	
DQDLEPGAPSMGAK	1	Oxidation (M)	1430.6348	0.63475872	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					2	2	2	2	27.217	24.062	2	2.8011E-09	33164	160511_QHF_FH_JSI9i_1	102.4	85.075			1.0739	1.0628	16.842	6	1	Median	1.2523	1.0205	NaN	1	0	Median	0.69802	0.8278	NaN	1	1	Median	1.2787	1.2268	18.377	2	0	Median	1.0314	1.0841	4.7207	2	0	Median	223300000	118330000	104960000	42976000	19900000	23076000	53226000	31875000	21351000	58280000	30182000	28099000	68813000	36375000	32438000	8931	878	8438	55374;55375;55376;55377;55378;55379;55380;55381	74723;74724;74725;74726;74727;74728;74729;74730;74731;74732;74733;74734	74732		426	12	
DQDLEPGAPSMGAK	1	Unmodified	1414.6398	0.6398441	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	6				2					3	1	2	2	40.306	37.405	2;3	1.0508E-06	33862	160511_QHF_FH_JSI10i_1	135.6	122.64			1.0852	1.0755	88.391	8	3	Median	4.2328	3.5033	96.149	3	3	Median	0.83491	1.004	NaN	1	0	Median	1.0852	1.0541	12.586	2	0	Median	0.52122	0.56338	123.25	2	0	Median	3293000000	1364100000	1928900000	1132700000	382490000	750250000	602660000	307270000	295400000	860080000	366340000	493740000	697520000	307990000	389530000	8932	878	8438	55382;55383;55384;55385;55386;55387;55388;55389	74735;74736;74737;74738;74739;74740;74741;74742;74743;74744;74745;74746;74747;74748;74749;74750	74745			16	
DQDLITIIGK	1	Unmodified	1114.6234	0.6233894	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	4	3	3	76.346	73.219	2	1.408E-05	67474	160511_QHF_FH_JSI11i_1	112.75	80.814			0.84759	0.98424	96.617	12	12	Median	1.122	0.93104	93.128	2	2	Median	0.84759	0.98424	75.606	4	4	Median	0.61627	0.59957	115.45	3	3	Median	0.8686	0.90452	143.68	3	3	Plateau	788520000	392270000	396250000	162150000	71322000	90831000	219440000	115170000	104260000	194380000	90662000	103720000	212550000	115110000	97433000	8933	2147	8439	55390;55391;55392;55393;55394;55395;55396;55397;55398;55399;55400;55401	74751;74752;74753;74754;74755;74756;74757;74758;74759;74760;74761;74762;74763	74752			13	
DQDLTQEIAMEHFVK	1	Unmodified	1802.8509	0.85089951	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.319	72.693	3	0.0014458	63729	160511_QHF_FH_JSI11i_2	60.918	54.612			0.36321	0.34705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36321	0.34705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17057000	13352000	3704400	0	0	0	0	0	0	17057000	13352000	3704400	0	0	0	8934	5415	8440	55402	74764	74764			1	
DQDNMQAELNR	0	Unmodified	1332.5728	0.57282717	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.576	26.207	2	1.375E-06	23122	160511_QHF_FH_JSI10i_1	113.69	69.338			0.72082	0.72335	11.539	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68225	0.66667	NaN	1	1	Median	0.76157	0.78484	NaN	1	1	Median	151060000	81668000	69391000	0	0	0	0	0	0	55173000	30964000	24209000	95886000	50704000	45182000	8935	1400	8441	55403;55404;55405	74765;74766;74767	74767			3	
DQDQLQAWESEGLFQISQNK	1	Unmodified	2363.103	0.10296811	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	98.381	98.285	3	1.803E-05	89104	160511_QHF_FH_JSI12i_1	66.536	58.732			0.83126	0.90223	44.732	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5875	0.65758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1762	1.2379	NaN	1	0	Median	54243000	29970000	24272000	0	0	0	18425000	14022000	4402600	0	0	0	35818000	15948000	19870000	8936	2728	8442	55406;55407	74768;74769;74770	74769			3	
DQEALEAVK	1	Unmodified	1001.5029	0.50293991	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		32.617	28.039	2	0.0033108	25252	160511_QHF_FH_JSI11i_1	59.931	18.278			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8937	679	8443	55408;55409	74771;74772	74771			2	
DQEALMK	1	Unmodified	833.3953	0.39530372	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				19.09	17.96	2	0.0087617	15030	160511_QHF_FH_JSI9i_1	85.265	33.693			4.308	3.5131	NaN	1	1	Median	4.308	3.5131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135880000	28784000	107100000	135880000	28784000	107100000	0	0	0	0	0	0	0	0	0	8938	4361	8444	55410	74773	74773			1	
DQEALMKSVK	2	Acetyl (K);Oxidation (M)	1205.5962	0.59618837	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	0.793				3	4	4				1	4	1	5	35.141	25.62	2	3.7527E-14	13440	160513_QHF_FH_JSI12Kac_2	157.78	117.43			0.63772	0.66736	156.11	9	9	Median	0.33802	0.27399	NaN	1	1	Median	1.6417	1.945	65.686	3	3	Median	0.31193	0.29974	NaN	1	1	Median	1.1895	1.2813	213.7	4	4	Median	133640000	84202000	49433000	40245000	30521000	9724000	41413000	26210000	15203000	2876700	2768300	108430	49101000	24703000	24398000	8939	4361	8445	55411;55412;55413;55414;55415;55416;55417;55418;55419;55420;55421	74774;74775;74776;74777;74778;74779;74780;74781;74782;74783;74784	74783	3143	2459	11	
DQEALMKSVK	2	Acetyl (K)	1189.6013	0.60127375	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					4	6					3	3	4	52.451	43.117	2	3.0383E-09	19710	160513_QHF_FH_JSI12Kac_2	130.94	79.086			2.3566	2.3645	277.47	10	10	Median	NaN	NaN	NaN	0	0	Median	12.326	14.748	307.94	3	3	Median	2.0712	1.9831	289.07	3	3	Median	0.4918	0.52817	309.3	4	4	Median	95954000	51475000	44479000	0	0	0	31220000	16313000	14907000	21298000	10887000	10411000	43437000	24275000	19162000	8940	4361	8445	55422;55423;55424;55425;55426;55427;55428;55429;55430;55431	74785;74786;74787;74788;74789;74790;74791;74792;74793;74794	74794	3143		10	
DQEEEMDYAPDDVYDYK	1	Unmodified	2123.8154	0.81536144	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.614	63.245	2	2.9335E-05	57378	160511_QHF_FH_JSI10i_1	94.09	93.561			0.55879	0.63623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55879	0.63623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13752000	9909100	3842800	0	0	0	13752000	9909100	3842800	0	0	0	0	0	0	8941	3563	8446	55432	74795	74795			1	
DQEEGVMEK	1	Unmodified	1063.4492	0.44918978	2613	Q15043	SLC39A14	Zinc transporter ZIP14	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.861	14.431	2	0.00023016	12139	160511_QHF_FH_JSI12i_1	99.802	67.868			0.36342	0.37031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36342	0.37031	NaN	1	1	Median	32531000	19706000	12825000	0	0	0	0	0	0	0	0	0	32531000	19706000	12825000	8942	2613	8447	55433	74796	74796			1	
DQEFTVDTR	0	Unmodified	1109.4989	0.49891717	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	33.088	28.985	2	8.9162E-05	26112	160511_QHF_FH_JSI10i_1	105.52	101.16			0.90613	0.92225	16.905	7	1	Median	1.5718	1.2837	NaN	1	0	Median	0.71667	0.82993	11.163	2	1	Median	1.0147	0.98501	16.957	2	0	Median	0.89661	0.95312	4.6564	2	0	Median	587040000	288380000	298670000	137190000	50028000	87159000	144590000	79156000	65434000	152070000	76205000	75864000	153190000	82987000	70208000	8943	512	8448	55434;55435;55436;55437;55438;55439;55440	74797;74798;74799;74800;74801;74802;74803;74804	74800			8	
DQEFTVK	1	Unmodified	865.41815	0.41814765	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	25.264	19.633	2	0.004157	5959	160513_QHF_FH_JSI9Kac_3	116.73	72.115			0.98332	0.87572	28.754	8	1	Median	1.2207	0.98483	18.57	2	1	Median	0.61605	0.7298	17.848	2	0	Median	0.8016	0.78336	17.725	2	0	Median	1.2384	1.3373	18.49	2	0	Median	3710400000	1939200000	1771200000	910810000	388910000	521900000	910820000	553260000	357560000	950580000	484160000	466410000	938190000	512900000	425290000	8944	1192	8449	55441;55442;55443;55444;55445;55446;55447;55448	74805;74806;74807;74808;74809;74810;74811;74812;74813	74810			9	
DQEFTVKSK	2	Acetyl (K)	1122.5557	0.55570376	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	39.051	30.209	2	7.296E-05	17458	160513_QHF_FH_JSI11Kac_3	121.73	77.925			0.50734	0.53381	39.104	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40101	0.40486	NaN	1	0	Median	0.64188	0.70384	NaN	1	0	Median	11237000	7158100	4078400	0	0	0	0	0	0	6246600	4161900	2084700	4990000	2996200	1993800	8945	1192	8450	55449;55450	74814;74815	74814	1048		2	
DQEGQDVLLFIDNIFR	0	Unmodified	1920.9581	0.95814177	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.75	2	7	4						2	2	3	5	5	103.13	101.91	2;3	2.4592E-183	91220	160511_QHF_FH_JSI11i_2	316.93	293.7			0.97008	1.0017	14.406	13	2	Median	1.2114	1.0244	4.718	2	0	Median	1.0488	1.224	26.551	3	1	Plateau	0.96096	0.98818	15.096	4	0	Median	0.97385	1.0608	7.3622	4	1	Median	732340000	374000000	358340000	97084000	41638000	55446000	168190000	82944000	85242000	289100000	152310000	136790000	177970000	97112000	80855000	8946	851	8451	55451;55452;55453;55454;55455;55456;55457;55458;55459;55460;55461;55462;55463;55464;55465	74816;74817;74818;74819;74820;74821;74822;74823;74824;74825;74826;74827;74828;74829;74830;74831;74832	74824			17	
DQELSPREPVLPPQK	1	Unmodified	1731.9155	0.91554867	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	46.429	45.752	3	0.0001365	40529	160511_QHF_FH_JSI9i_1	79.022	68.922			1.0736	1.017	16.484	4	0	Median	1.2556	1.0394	NaN	1	0	Median	0.66236	0.78788	NaN	1	0	Median	1.2053	1.1668	NaN	1	0	Median	0.95633	0.99513	NaN	1	0	Median	273950000	126650000	147310000	56790000	21896000	34894000	76450000	42300000	34150000	76967000	34307000	42659000	63746000	28145000	35601000	8947	645	8452	55466;55467;55468;55469	74833;74834	74833			2	
DQELYFFHELSPGSCFFLPK	1	Unmodified	2460.146	0.1460189	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	95.636	86.215	3	1.9587E-57	46823	160513_QHF_FH_JSI12Kac_6	195.93	182.2			0.87609	0.86999	30.828	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74463	0.69959	NaN	1	0	Median	1.0308	1.0819	NaN	1	0	Median	352460000	178290000	174170000	0	0	0	0	0	0	145950000	73417000	72533000	206510000	104870000	101640000	8948	1282	8453	55470;55471	74835;74836;74837;74838	74837			4	
DQEVLLQTGR	0	Unmodified	1157.6041	0.60405094	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.734	37.293	2	0.00086346	33569	160511_QHF_FH_JSI11i_1	82.417	56.858			1.9767	1.9528	72.016	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.265	1.1736	NaN	1	1	Median	3.0888	3.2495	NaN	1	1	Median	110960000	48713000	62242000	0	0	0	0	0	0	68539000	34717000	33822000	42416000	13996000	28420000	8949	1769	8454	55472;55473	74839;74840	74839			2	
DQEVNFQEYVTFLGALALIYNEALK	1	Unmodified	2887.4644	0.46437615	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.4	4.86		2	2	2	3	1	1	2	10	4	14	5		106.39	100	2;3	1.2823E-129	55276	160513_QHF_FH_JSI9Kac_6	326.85	298.27			1.2456	1.0705	41.722	21	5	Median	1.4938	1.2613	13.292	4	0	Linear	1.5042	1.7552	44.192	12	5	Median	0.92411	0.91106	17.134	5	0	Median	NaN	NaN	NaN	0	0	Median	1605700000	747770000	857900000	340910000	144110000	196800000	1189000000	572780000	616260000	75722000	30887000	44835000	0	0	0	8950	852	8455	55474;55475;55476;55477;55478;55479;55480;55481;55482;55483;55484;55485;55486;55487;55488;55489;55490;55491;55492;55493;55494;55495;55496	74841;74842;74843;74844;74845;74846;74847;74848;74849;74850;74851;74852;74853;74854;74855;74856;74857;74858;74859;74860;74861;74862;74863;74864;74865;74866;74867;74868;74869;74870;74871;74872;74873;74874;74875;74876;74877	74864			37	
DQEVNFQEYVTFLGALALIYNEALKG	1	Unmodified	2944.4858	0.48583987	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	4.86		2		2	1		1	1	6	3	4	3	3	105.21	98.176	2;3	9.2289E-129	58884	160513_QHF_FH_JSI10Kac_6	322.43	308.78			1.0644	1.009	26.105	11	2	Median	1.0644	0.9021	1.9308	3	2	Median	0.79422	0.94904	35.608	3	0	Plateau	0.99688	0.962	11.623	2	0	Median	0.97886	1.0472	27.023	3	0	Plateau	1001900000	564220000	437710000	163120000	77873000	85247000	767050000	452750000	314310000	30602000	13903000	16699000	41158000	19698000	21460000	8951	852	8456	55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509	74878;74879;74880;74881;74882;74883;74884;74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895;74896;74897	74896			20	
DQFALAMYFIQQK	1	Unmodified	1601.7912	0.79119978	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	94.563	85.986	2;3	6.9246E-10	48223	160513_QHF_FH_JSI11Kac_6	160.77	129.58			0.85153	0.90401	42.974	5	2	Median	1.5362	1.308	NaN	1	0	Median	0.50237	0.58723	NaN	1	1	Median	1.2036	1.1555	57.655	2	1	Median	0.85153	0.90401	NaN	1	0	Median	174160000	99722000	74439000	26811000	13531000	13279000	61685000	46346000	15339000	55211000	24732000	30479000	30454000	15113000	15341000	8952	5230	8457	55510;55511;55512;55513;55514	74898;74899;74900;74901;74902	74899			5	
DQFGFINYEVGDSK	1	Unmodified	1617.7311	0.73110195	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	77.266	76.685	2	3.5361E-06	68426	160511_QHF_FH_JSI9i_1	121.56	97.093			0.88957	0.87482	35.509	3	3	Median	0.59474	0.48565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88957	0.87482	NaN	1	1	Median	0.89332	0.91963	NaN	1	1	Median	447150000	241240000	205910000	130570000	74980000	55592000	0	0	0	182180000	98578000	83601000	134400000	67687000	66715000	8953	543	8458	55515;55516;55517	74903;74904;74905;74906;74907;74908	74908			6	
DQFGFINYEVGDSKK	2	Unmodified	1745.8261	0.82606496	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	67.713	66.414	2	0.018001	57190	160511_QHF_FH_JSI12i_2	57.802	32.365			0.073735	0.084068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073735	0.084068	NaN	1	1	Median	53104000	47226000	5878200	0	0	0	0	0	0	0	0	0	53104000	47226000	5878200	8954	543	8459	55518	74909	74909			1	
DQFLDTLQAHGHDVNSFVR	0	Unmodified	2198.0505	0.050479026	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	3	3	74.497	73.68	3;4	2.8669E-09	65307	160511_QHF_FH_JSI10i_2	109.89	77.504			0.74628	0.89795	20.637	9	4	Median	0.74628	0.65776	NaN	1	0	Median	0.70728	0.86867	4.6873	2	0	Median	0.96762	0.9167	22.832	3	2	Median	0.8295	0.93904	27.269	3	2	Median	354550000	189390000	165170000	32536000	18343000	14193000	71468000	42273000	29195000	138810000	65156000	73656000	111740000	63614000	48122000	8955	2605	8460	55519;55520;55521;55522;55523;55524;55525;55526;55527	74910;74911;74912;74913;74914;74915;74916	74914			7	
DQGADSSQIHVPVEPQEDNNLPTHGGQEQALGSELQSQLPK	1	Unmodified	4377.0745	0.07452811	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	78.259	77.827	4	1.0746E-05	70776	160511_QHF_FH_JSI11i_1	40.777	39.469			0.76449	0.72909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76449	0.72909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87273000	50577000	36696000	0	0	0	0	0	0	29818000	10900000	18918000	57455000	39677000	17778000	8956	681	8461	55528;55529	74917;74918;74919;74920	74917			4	
DQGELER	0	Unmodified	845.38791	0.38791015	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	2	2	2	9.5724	6.2282	2	0.0086729	6290	160511_QHF_FH_JSI11i_1	82.452	32.326			0.85636	0.95442	21.501	7	1	Median	1.2824	1.047	NaN	1	0	Median	0.83978	0.98736	4.798	2	0	Median	0.85763	0.84142	47.474	2	1	Median	0.85252	0.89601	7.663	2	0	Median	3482500000	1782800000	1699700000	608790000	263450000	345350000	1118100000	650460000	467620000	856290000	376100000	480190000	899350000	492830000	406520000	8957	1436	8462	55530;55531;55532;55533;55534;55535;55536	74921;74922;74923;74924;74925;74926;74927;74928	74921			8	
DQGGELLSLR	0	Unmodified	1086.5669	0.56693715	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	54.399	53.737	2	7.1473E-08	47817	160511_QHF_FH_JSI9i_1	123.79	77.331			0.8306	0.92665	52.009	4	1	Median	0.40771	0.33203	NaN	1	0	Median	0.79459	0.96292	NaN	1	0	Median	0.97276	0.94344	NaN	1	1	Median	0.86824	0.91016	NaN	1	0	Median	1027800000	541340000	486430000	224560000	111700000	112860000	287700000	154480000	133220000	272470000	137680000	134800000	243040000	137480000	105560000	8958	1012;1666	8463	55537;55538;55539;55540;55541	74929;74930;74931;74932;74933;74934;74935	74934			7	
DQGGFGDRNEYGSR	0	Unmodified	1556.6604	0.66039662	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	17.98	17.404	3	0.00011887	14161	160511_QHF_FH_JSI11i_2	78.191	71.152			0.93862	0.96018	6.0199	5	1	Median	1.185	1.0337	NaN	1	0	Median	0.77218	0.93069	NaN	1	0	Median	0.93862	0.96018	NaN	1	1	Median	0.88019	0.9198	6.8989	2	0	Median	328120000	163560000	164560000	57143000	25715000	31429000	75198000	39515000	35683000	95752000	49494000	46258000	100030000	48837000	51192000	8959	3911	8464	55542;55543;55544;55545;55546	74936;74937;74938;74939	74938			4	
DQGINIR	0	Unmodified	814.42972	0.42971539	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	20.66	20.137	2	0.0088032	17316	160511_QHF_FH_JSI11i_1	71.141	42.612			1.0422	1.0073	15.591	3	1	Plateau	1.2461	1.0339	NaN	1	0	Median	0.87163	1.0042	NaN	1	0	Median	1.3564	1.3333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	353910000	174530000	179380000	114840000	52980000	61859000	120550000	69134000	51413000	118520000	52412000	66112000	0	0	0	8960	2558	8465	55547;55548;55549;55550;55551	74940;74941;74942;74943;74944	74941			5	
DQGLSIMVSGK	1	Unmodified	1133.5751	0.575059	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.987	52.319	2	0.00013367	47504	160511_QHF_FH_JSI12i_1	90.05	67.813			0.88433	1.0547	18.719	3	3	Median	1.3208	1.0988	NaN	1	1	Median	0.88433	1.0547	NaN	1	1	Median	0.78996	0.77994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	320480000	159820000	160660000	95226000	42703000	52523000	131900000	66193000	65702000	93359000	50920000	42439000	0	0	0	8961	2147	8466	55552;55553;55554;55555	74945;74946;74947;74948;74949	74946			5	
DQGSFTEVVSISNLGMAK	1	Unmodified	1881.9142	0.91422805	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			92.184	91.776	3	5.9236E-06	83240	160511_QHF_FH_JSI10i_1	88.133	80.724			0.99592	0.96549	19.767	2	1	Median	1.0418	0.83954	NaN	1	1	Median	0.95208	1.1103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29222000	16748000	12474000	12288000	7057900	5229900	16934000	9690400	7243800	0	0	0	0	0	0	8962	1005	8467	55556;55557	74950;74951;74952	74950			3	
DQGTYEDYVEGLR	0	Unmodified	1543.6791	0.67906638	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	1	3	65.447	63.24	2	1.3327E-31	57232	160511_QHF_FH_JSI12i_1	171.05	144.38			0.95426	0.97821	9.1598	5	0	Median	1.175	0.97821	NaN	1	0	Median	0.72339	0.84175	NaN	1	0	Median	0.91836	0.90303	NaN	1	0	Median	0.9666	1.0381	0.44048	2	0	Median	5480200000	2827700000	2652600000	1660000000	749280000	910700000	1416400000	823960000	592400000	1435400000	664140000	771240000	968530000	590290000	378240000	8963	1915	8468	55558;55559;55560;55561;55562;55563	74953;74954;74955;74956;74957;74958;74959;74960;74961	74956			9	
DQGTYEDYVEGLRVFDK	1	Unmodified	2032.9378	0.93780026	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	1.75	0.433	1	3								1	1	1	1	86.703	86.177	3	0.00036087	78475	160511_QHF_FH_JSI12i_1	56.959	47.675			1.2272	2.3958	54.657	4	0	Linear	1.2704	1.0668	NaN	1	0	Median	1.1854	1.4697	NaN	1	0	Median	0.58577	0.55425	NaN	1	0	Median	1.9411	1.9846	NaN	1	0	Median	120950000	53260000	67690000	22707000	10661000	12046000	27603000	13500000	14102000	15814000	10074000	5740400	54827000	19026000	35801000	8964	1915	8469	55564;55565;55566;55567	74962;74963	74962			1	
DQGVNVR	0	Unmodified	786.39842	0.39841526	5727	Q9Y6I3;Q9H201	EPN1;EPN3	Epsin-1;Epsin-3	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	8.9322	8.41	2	0.013023	6427	160511_QHF_FH_JSI12i_1	71.852	53.047			1.4982	1.4028	5.353	2	2	Median	1.6198	1.3507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3857	1.4569	NaN	1	1	Median	199930000	83942000	115990000	95617000	40774000	54843000	0	0	0	0	0	0	104310000	43168000	61144000	8965	5727	8470	55568;55569;55570	74964;74965;74966	74965			3	
DQHFRGDNEEQEK	1	Unmodified	1630.6972	0.69717606	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			8.4798	8.0051	3	0.013161	6000	160511_QHF_FH_JSI10i_2	40.552	30.085			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8966	1768	8471	55571	74967	74967			1	
DQHFVKIQVK	2	Acetyl (K)	1282.7034	0.70337105	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								3			1	2		57.025	46.26	2;3	0.016046	25407	160513_QHF_FH_JSI11Kac_5	34.695	28.259			0.39592	0.43017	110.45	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79051	0.93931	NaN	1	0	Median	0.19829	0.197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24885000	20281000	4603300	0	0	0	3643800	1822000	1821800	21241000	18459000	2781500	0	0	0	8967	793	8472	55572;55573;55574	74968;74969;74970	74968	420		3	
DQHSFELDEK	1	Unmodified	1246.5466	0.54659564	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		27.239	26.988	2;3	5.9997E-11	23918	160511_QHF_FH_JSI10i_1	146.11	122.08			0.93799	1.068	16.836	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90315	1.068	0.55829	2	0	Median	1.1634	1.1439	28.337	2	1	Median	NaN	NaN	NaN	0	0	Median	561150000	256520000	304630000	0	0	0	267440000	124380000	143060000	293710000	132140000	161570000	0	0	0	8968	3036	8473	55575;55576;55577;55578	74971;74972;74973;74974;74975	74973			4	
DQIAKDVK	2	Acetyl (K)	957.51311	0.51311067	1906	P60033	CD81	CD81 antigen	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		29.554	21.025	2	0.011381	13035	160513_QHF_FH_JSI11Kac_3	76.679	21.148			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2045300	2045300	0	0	0	0	0	0	0	2045300	2045300	0	0	0	0	8969	1906	8474	55579	74976	74976	1904		1	
DQIAQLEASLAAAK	1	Unmodified	1427.762	0.76200815	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	3	1	2	84.178	83.699	2;3	6.4298E-10	74584	160511_QHF_FH_JSI9i_1	149.41	130.67			1.0047	1.0147	43.216	8	2	Median	0.9046	0.72818	29.257	2	0	Median	0.88813	1.028	67.864	3	2	Median	1.0344	1.0016	NaN	1	0	Median	1.1455	1.1769	16.631	2	0	Median	1202300000	614510000	587820000	279760000	140520000	139240000	353350000	194290000	159060000	278540000	136760000	141780000	290680000	142940000	147730000	8970	1180	8475	55580;55581;55582;55583;55584;55585;55586;55587;55588	74977;74978;74979;74980;74981;74982;74983;74984;74985;74986;74987;74988;74989;74990;74991;74992;74993;74994;74995;74996	74994			20	
DQIAQLEASLAAAKK	2	Unmodified	1555.857	0.85697116	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	74.155	73.501	3	5.5621E-11	66537	160511_QHF_FH_JSI10i_1	153.23	125.26			1.0549	1.0938	13.373	6	1	Median	1.1847	1.0458	NaN	1	0	Median	0.84545	1.017	16.646	2	0	Median	0.99865	0.95195	NaN	1	1	Median	1.1615	1.2238	7.9976	2	0	Median	221870000	102760000	119110000	32615000	15086000	17530000	95693000	50209000	45485000	32699000	15375000	17324000	60863000	22087000	38776000	8971	1180	8476	55589;55590;55591;55592;55593;55594	74997;74998;74999;75000;75001;75002	75001			5	
DQIIDSLK	1	Unmodified	930.50221	0.50221163	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.33	48.112	2	0.024076	42670	160511_QHF_FH_JSI9i_1	53.775	25.263			0.416	0.34332	NaN	1	1	Median	0.416	0.34332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46447000	31648000	14799000	46447000	31648000	14799000	0	0	0	0	0	0	0	0	0	8972	3102	8477	55595	75003	75003			1	
DQIIFMVGR	0	Unmodified	1077.5641	0.56410038	968;801	P10398;P04049	ARAF;RAF1	Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	3.99		1					3	5		1	2	4	2	78.347	67.807	2	0.0057126	34964	160513_QHF_FH_JSI9Kac_5	64.265	57.815			0.92999	0.94427	26.675	7	0	Median	1.8973	1.5587	NaN	1	0	Median	0.84086	0.97206	11.484	2	0	Median	1.2423	1.18	36.304	2	0	Median	0.79171	0.86699	12.075	2	0	Median	14918000	7935500	6982600	1853300	709510	1143800	6004900	3571300	2433600	3370100	1461000	1909100	3689800	2193700	1496100	8973	968;801	8478	55596;55597;55598;55599;55600;55601;55602;55603;55604	75004;75005;75006;75007;75008;75009;75010;75011;75012;75013;75014	75004			11	
DQIIFMVGR	0	Oxidation (M)	1093.559	0.559015	968;801	P10398;P04049	ARAF;RAF1	Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase	no	no	0	0	1	0				By MS/MS	14	0							1						1	68.807	58.111	2	0.045149	31702	160513_QHF_FH_JSI12Kac_4	53.166	27.43			1.7241	1.823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7241	1.823	NaN	1	1	Median	3040100	1175100	1865000	0	0	0	0	0	0	0	0	0	3040100	1175100	1865000	8974	968;801	8478	55605	75015	75015			1	
DQIMYER	0	Unmodified	953.42767	0.42766648	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS		By matching		1	0	2									1		1		23.393	22.711	2	0.035879	19407	160511_QHF_FH_JSI9i_1	49.418	22.816			1.1251	0.99079	16.325	2	0	Median	1.388	1.112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91192	0.88277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80941000	43624000	37317000	40345000	22689000	17656000	0	0	0	40596000	20935000	19661000	0	0	0	8975	285	8479	55606;55607	75016	75016			1	
DQINSDHR	0	Unmodified	983.44207	0.44207099	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.7274	4.5007	2	0.00023757	2397	160511_QHF_FH_JSI10i_1	117.4	43.782			0.80756	0.77079	10.579	3	0	Median	NaN	NaN	NaN	0	0	Median	0.5924	0.69347	NaN	1	0	Median	0.80756	0.77079	NaN	1	0	Median	0.81625	0.85686	NaN	1	0	Median	472180000	261940000	210240000	0	0	0	156980000	91887000	65089000	155330000	85962000	69367000	159880000	84090000	75785000	8976	2319	8480	55608;55609;55610	75017;75018;75019;75020	75020			4	
DQIPSPGLMVFPK	1	Unmodified	1427.7483	0.74827234	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	85.871	85.407	2;3	0.00016755	76076	160511_QHF_FH_JSI9i_1	106.29	87.511			1.4129	1.3849	2.5959	5	5	Median	1.6718	1.3849	NaN	1	1	Median	1.1424	1.3598	NaN	1	1	Median	1.4288	1.3926	NaN	1	1	Median	1.3389	1.3556	4.5091	2	2	Median	779330000	317790000	461540000	199220000	76363000	122850000	189830000	92110000	97717000	207420000	77118000	130300000	182870000	72204000	110670000	8977	1829	8481	55611;55612;55613;55614;55615	75021;75022;75023;75024;75025	75025			5	
DQISVLPNEQDLVREEAQK	1	Unmodified	2210.1179	0.11788989	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	69.174	68.569	3	4.1656E-09	60926	160511_QHF_FH_JSI9i_1	113.53	88.937			1.1251	1.1282	11.538	6	4	Median	1.3568	1.1215	14.731	2	2	Median	1.0128	1.2	NaN	1	0	Median	1.1096	1.0824	18.776	2	2	Median	1.024	1.0608	NaN	1	0	Median	614400000	279610000	334800000	186810000	74531000	112280000	123660000	59598000	64060000	185350000	90188000	95165000	118580000	55290000	63288000	8978	404	8482	55616;55617;55618;55619;55620;55621	75026;75027;75028;75029;75030;75031;75032;75033	75032			8	
DQITAGNAAR	0	Unmodified	1015.5047	0.50467125	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.1	4	3	3		2	3				4	4	2	5	12.805	9.8557	2	1.5415E-07	8414	160511_QHF_FH_JSI9i_1	138.4	94.001			0.87702	0.93108	17.105	14	2	Median	1.2563	1.0189	34.773	4	2	Median	0.73442	0.90347	4.5721	4	0	Linear	0.91884	0.90613	5.155	2	0	Median	0.84363	0.94726	2.9051	4	0	Linear	6105600000	3181100000	2924500000	1231000000	594270000	636710000	1866500000	1055500000	811000000	1427600000	691660000	735980000	1580500000	839690000	740810000	8979	1206	8483	55622;55623;55624;55625;55626;55627;55628;55629;55630;55631;55632;55633;55634;55635;55636	75034;75035;75036;75037;75038;75039;75040;75041;75042;75043;75044;75045;75046;75047;75048;75049;75050;75051;75052;75053;75054	75045			20	
DQITAGNAARK	1	Unmodified	1143.5996	0.59963426	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	9.2763	8.7602	2	0.012386	6368	160511_QHF_FH_JSI12i_2	52.79	13.642			0.18227	0.16027	NaN	1	1	Median	0.18227	0.16027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45944000	34043000	11901000	45944000	34043000	11901000	0	0	0	0	0	0	0	0	0	8980	1206	8484	55637;55638	75055;75056	75055			2	
DQIVSVQEEK	1	Unmodified	1173.5877	0.58773217	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				30.02	28.747	2	0.0036945	24995	160511_QHF_FH_JSI9i_1	58.743	25.518			0.79461	0.65	NaN	1	1	Median	0.79461	0.65	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15223000	8300500	6922100	15223000	8300500	6922100	0	0	0	0	0	0	0	0	0	8981	8	8485	55639;55640	75057;75058	75058			2	
DQIYDIFQK	1	Unmodified	1168.5764	0.57643921	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.31	5	1	1			2	4	2		2	6	3	4	76.277	70.244	2	7.6831E-23	65885	160511_QHF_FH_JSI12i_1	183.65	153.46			0.98077	1.0487	32.843	14	1	Median	1.1152	0.9261	0.55184	2	0	Median	0.90904	1.0915	22.568	5	1	Median	0.77342	0.75267	55.665	3	0	Median	0.78863	0.85602	16.57	4	0	Linear	9405900000	4702700000	4703200000	2066800000	945850000	1120900000	2414200000	1231900000	1182300000	2547300000	1221000000	1326200000	2377700000	1303900000	1073800000	8982	1917	8486	55641;55642;55643;55644;55645;55646;55647;55648;55649;55650;55651;55652;55653;55654;55655	75059;75060;75061;75062;75063;75064;75065;75066;75067;75068;75069;75070;75071;75072;75073;75074;75075;75076;75077;75078;75079;75080;75081;75082;75083;75084;75085;75086;75087;75088;75089;75090;75091;75092	75067			34	
DQIYEIFQK	1	Unmodified	1182.5921	0.59208927	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.29	5						3			1	3	2	2	73.266	68.43	2	6.0004E-06	61756	160511_QHF_FH_JSI9i_1	113.71	68.026			0.74895	0.79507	76.798	7	5	Median	1.3478	1.1061	NaN	1	0	Median	0.68552	0.79507	108	3	2	Plateau	0.72158	0.71797	NaN	1	1	Median	0.66226	0.70013	15.646	2	2	Median	612760000	317560000	295200000	170440000	71475000	98969000	157860000	87106000	70750000	133420000	79938000	53484000	151040000	79038000	71999000	8983	2519	8487	55656;55657;55658;55659;55660;55661;55662;55663	75093;75094;75095;75096;75097;75098;75099;75100;75101;75102	75099			10	
DQKLPHLER	1	Acetyl (K)	1176.6251	0.62512073	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		43.556	33.426	3	0.0032157	20127	160513_QHF_FH_JSI11Kac_4	55.401	38.73			0.54824	0.59063	93.426	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97224	1.1435	NaN	1	0	Median	0.30915	0.30508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8775900	5770600	3005300	0	0	0	2251200	1018000	1233200	6524700	4752700	1772000	0	0	0	8984	1205	8488	55664;55665	75103	75103	1072		1	
DQKWHDK	2	Acetyl (K)	997.46174	0.4617438	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1			By MS/MS		14	0							2					2		17.528	9.9062	2;3	0.020364	7495	160513_QHF_FH_JSI11Kac_4	82.452	53.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4005500	4005500	0	0	0	0	0	0	0	4005500	4005500	0	0	0	0	8985	1992	8489	55666;55667	75104;75105	75104	2015		2	
DQLAADMYNFMAK	1	Unmodified	1516.669	0.66903574	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		89.182	88.758	2	8.6478E-06	80832	160511_QHF_FH_JSI11i_1	131.43	107.58			1.0334	1.2146	24.519	3	2	Median	1.0161	0.81364	NaN	1	0	Median	1.0334	1.2146	NaN	1	1	Median	1.3023	1.27	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144980000	66747000	78235000	39851000	23112000	16738000	46960000	18564000	28396000	58172000	25071000	33100000	0	0	0	8986	3029	8490	55668;55669;55670	75106;75107;75108	75106			3	
DQLALAIGK	1	Unmodified	927.53893	0.53893149	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	3	2	57.79	52.583	2	2.7136E-05	47177	160511_QHF_FH_JSI10i_1	103.74	59.931			0.98266	1.0239	34.947	8	2	Median	0.9649	0.77741	NaN	1	0	Median	0.90831	1.0613	17.839	3	1	Median	1.0896	1.0692	11.21	2	0	Median	1.3332	1.429	71.304	2	1	Median	946380000	497730000	448650000	238080000	115060000	123020000	255350000	149410000	105940000	231120000	120150000	110970000	221830000	113120000	108710000	8987	1568	8491	55671;55672;55673;55674;55675;55676;55677;55678;55679	75109;75110;75111;75112;75113;75114;75115;75116;75117;75118;75119;75120;75121;75122	75117			14	
DQLDETVNVEPLTK	1	Unmodified	1599.7992	0.79918151	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.162	61.526	2	1.0385E-14	55917	160511_QHF_FH_JSI11i_1	160.69	145.99			0.82084	0.79954	32.327	4	1	Median	0.98117	0.80191	NaN	1	0	Median	0.68671	0.79717	NaN	1	0	Median	0.68112	0.64145	NaN	1	0	Median	1.3124	1.3704	NaN	1	1	Median	260200000	129530000	130660000	73961000	36503000	37458000	70872000	40855000	30017000	64505000	32477000	32028000	50857000	19696000	31161000	8988	2516	8492	55680;55681;55682;55683	75123;75124;75125;75126;75127;75128	75124			6	
DQLEAAQEAVPPADIVFSVK	1	Unmodified	2126.0895	0.089549874	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	4										1		3	96.177	96.02	2;3	3.883E-06	86923	160511_QHF_FH_JSI10i_1	91.207	78.44			0.74843	0.80677	17.864	2	0	Median	NaN	NaN	NaN	0	0	Median	0.62211	0.71103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90039	0.91539	NaN	1	0	Median	30729000	14488000	16241000	0	0	0	17539000	8821900	8717000	0	0	0	13190000	5666300	7523500	8989	3146	8493	55684;55685;55686;55687	75129;75130;75131;75132;75133	75131			5	
DQLIYNLLK	1	Unmodified	1118.6336	0.63356015	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.78	10	8	8				4	5	1	9	8	10	9	83.548	80.375	2	5.7364E-08	77698	160511_QHF_FH_JSI12i_1	150.4	104.68			0.63536	0.71641	118.89	34	31	Median	0.92082	0.76928	135.2	8	7	Median	0.58742	0.69897	128.71	8	7	Median	0.56689	0.56356	122.66	9	9	Median	0.67786	0.7218	112.59	9	8	Median	26393000000	11932000000	14461000000	5065300000	2072200000	2993100000	6709100000	3310000000	3399200000	7805100000	3500300000	4304800000	6813200000	3049400000	3763800000	8990	761	8494	55688;55689;55690;55691;55692;55693;55694;55695;55696;55697;55698;55699;55700;55701;55702;55703;55704;55705;55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716;55717;55718;55719;55720;55721;55722;55723	75134;75135;75136;75137;75138;75139;75140;75141;75142;75143;75144;75145;75146;75147;75148;75149;75150;75151;75152;75153;75154;75155;75156;75157;75158;75159;75160;75161;75162;75163;75164;75165;75166;75167;75168;75169;75170;75171;75172;75173;75174;75175;75176;75177;75178;75179;75180;75181;75182;75183;75184;75185;75186;75187;75188;75189;75190	75148			57	
DQLIYNLLKEEQTPQNK	2	Unmodified	2073.0742	0.074234161	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			79.909	79.203	3	0.0044732	70416	160511_QHF_FH_JSI10i_2	49.606	34.351			0.081859	0.099313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.081859	0.099313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20917000	19361000	1556300	0	0	0	20917000	19361000	1556300	0	0	0	0	0	0	8991	761	8495	55724	75191	75191			1	
DQLLAAKHVQSK	2	Acetyl (K)	1378.7569	0.75686319	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		44.133	33.916	3	0.0027965	20307	160513_QHF_FH_JSI11Kac_4	51.211	37.532			0.28613	0.28291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28613	0.28291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6659900	5721700	938190	0	0	0	0	0	0	6659900	5721700	938190	0	0	0	8992	2470	8496	55725	75192	75192	2491		1	
DQLLLGPTYATPK	1	Unmodified	1415.766	0.76603089	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	66.8	64.617	2	9.1128E-07	58358	160511_QHF_FH_JSI10i_1	128.85	85.565			0.94893	0.93131	21.337	5	0	Median	0.98693	0.81632	NaN	1	0	Median	0.75975	0.93131	NaN	1	0	Median	0.75016	0.7261	NaN	1	0	Median	1.0444	1.1326	16.192	2	0	Median	1278100000	657170000	620910000	322070000	168880000	153180000	279830000	133160000	146670000	335520000	167490000	168030000	340670000	187640000	153020000	8993	1848	8497	55726;55727;55728;55729;55730;55731	75193;75194;75195;75196;75197;75198;75199;75200;75201;75202	75198			10	
DQLPADECNK	1	Unmodified	1188.5081	0.50810164	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					1	2	1	2	15.975	14.469	2	1.4324E-09	12380	160511_QHF_FH_JSI12i_1	134.26	93.273			0.48068	0.5153	46.109	6	4	Median	0.30848	0.25441	NaN	1	1	Median	0.43162	0.51129	0.96102	2	2	Median	0.53308	0.51582	NaN	1	0	Median	0.82087	0.85852	24.192	2	1	Median	3111100000	2058700000	1052400000	755020000	561550000	193470000	1245100000	910590000	334500000	525670000	286310000	239350000	585280000	300250000	285030000	8994	1480	8498	55732;55733;55734;55735;55736;55737	75203;75204;75205;75206;75207;75208;75209;75210	75206			8	
DQLQEQLQALK	1	Unmodified	1312.6987	0.69867961	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	61.158	60.428	2	4.1644E-13	53663	160511_QHF_FH_JSI9i_1	150.1	101.31			1.0556	1.016	58.388	6	0	Median	0.92025	0.77533	25.999	2	0	Median	0.49841	0.58811	103.7	2	0	Median	1.3822	1.3438	NaN	1	0	Median	1.0535	1.1078	NaN	1	0	Median	594000000	302660000	291340000	175160000	86150000	89015000	171990000	101570000	70413000	124220000	57540000	66681000	122630000	57395000	65234000	8995	2587	8499	55738;55739;55740;55741;55742;55743	75211;75212;75213;75214;75215;75216;75217	75216			7	
DQLQTFSEEHPVLLTEAPLNPR	0	Unmodified	2533.2813	0.28126682	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	2	2	3	85.575	84.981	3	2.741E-37	74922	160511_QHF_FH_JSI9i_2	193.11	172.67			1.021	1.2223	17.85	10	1	Linear	1.3114	1.1199	8.4061	3	0	Plateau	0.87244	1.0591	5.6652	2	0	Median	1.088	1.0892	4.0306	2	0	Median	0.9641	1.0924	28.997	3	1	Plateau	1694600000	801590000	893030000	353530000	143810000	209720000	413530000	209850000	203680000	529840000	249460000	280390000	397710000	198470000	199240000	8996	1941	8500	55744;55745;55746;55747;55748;55749;55750;55751;55752;55753	75218;75219;75220;75221;75222;75223;75224;75225;75226;75227;75228;75229;75230;75231;75232;75233;75234;75235;75236	75230			19	
DQLQTFSEEHPVLLTEAPLNPSK	1	Unmodified	2592.3071	0.30714722	1524	P42025	ACTR1B	Beta-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	85.392	84.818	3	1.4263E-19	77400	160511_QHF_FH_JSI12i_1	135.1	122.97			0.78129	0.90707	18.953	8	3	Median	0.98158	0.8529	35.114	2	1	Median	0.74991	0.90744	6.5767	2	0	Median	0.85543	0.86199	13.729	2	0	Median	0.87062	0.93726	30.53	2	2	Median	373300000	195860000	177450000	70575000	28657000	41918000	104480000	63569000	40915000	96537000	50835000	45701000	101710000	52798000	48911000	8997	1524	8501	55754;55755;55756;55757;55758;55759;55760;55761	75237;75238;75239;75240;75241;75242;75243;75244;75245;75246	75238			10	
DQLRPTQLLQNVAR	0	Unmodified	1650.9166	0.91655173	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			66.511	65.435	3	0.00078619	53688	160511_QHF_FH_JSI9i_3	59.709	45.679			1.2937	1.0439	15.641	3	1	Plateau	1.14	0.9414	14.881	2	0	Median	0.61969	0.77041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97013000	51916000	45097000	67174000	35172000	32002000	29839000	16744000	13095000	0	0	0	0	0	0	8998	5161	8502	55762;55763;55764	75247;75248;75249;75250	75248			4	
DQLTDLSNSLEK	1	Unmodified	1361.6674	0.66743906	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.838	62.192	2	0.00023251	56615	160511_QHF_FH_JSI12i_1	93.839	62.345			0.59353	0.60655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59353	0.60655	NaN	1	1	Median	57074000	38923000	18151000	0	0	0	0	0	0	0	0	0	57074000	38923000	18151000	8999	2574	8503	55765	75251	75251			1	
DQLTTDLNSMEK	1	Unmodified	1393.6395	0.63950975	5714	Q9Y6A5	TACC3	Transforming acidic coiled-coil-containing protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		54.887	54.098	2	0.0028525	48076	160511_QHF_FH_JSI9i_1	58.676	40.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9000	5714	8504	55766;55767	75252;75253	75253			2	
DQLVTQLHWQENGPTFSSTPYR	0	Unmodified	2603.2405	0.24046464	4865	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	78.423	77.928	3	9.0076E-10	67692	160511_QHF_FH_JSI12i_3	98.703	86.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9001	4865	8505	55768;55769	75254;75255	75255			2	
DQMEGSPNSSESFEHIAR	0	Unmodified	2019.8592	0.85923236	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	2	1	40.846	40.245	2;3	2.4301E-07	36485	160511_QHF_FH_JSI12i_1	108.92	105.49			1.0859	1.0193	8.8994	5	0	Median	1.1825	0.95738	NaN	1	0	Median	0.79478	0.93315	NaN	1	0	Median	1.093	1.0752	7.5385	2	0	Median	1.0859	1.1213	NaN	1	0	Median	379330000	188420000	190920000	42162000	18648000	23514000	93155000	52307000	40847000	125910000	59379000	66535000	118100000	58083000	60019000	9002	5646	8506	55770;55771;55772;55773;55774;55775	75256;75257;75258	75257			2	
DQMELFLQNHVFPLLLSNLGYLR	0	Unmodified	2759.4469	0.44689236	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		100.94	93.095	3;4	1.6803E-74	56031	160513_QHF_FH_JSI10Kac_6	212.01	196.12			1.2379	1.2194	20.561	5	1	Median	1.6046	1.3714	37.742	2	1	Median	0.99931	1.175	5.2394	2	0	Median	1.347	1.2752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1995600000	921180000	1074400000	530810000	212070000	318740000	1238200000	623510000	614670000	226570000	85610000	140960000	0	0	0	9003	287	8507	55776;55777;55778;55779;55780	75259;75260;75261;75262;75263;75264	75261			6	
DQMELFLQNHVFPLLLSNLGYLR	0	Oxidation (M)	2775.4418	0.44180699	287	O15397	IPO8	Importin-8	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				98.795	89.661	3	0.00087717	51527	160513_QHF_FH_JSI9Kac_6	51.938	44.662			1.695	1.4467	NaN	1	0	Median	1.695	1.4467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	630630000	263850000	366780000	630630000	263850000	366780000	0	0	0	0	0	0	0	0	0	9004	287	8507	55781	75265	75265		115	1	
DQMLQIQNSTEPDPLLATLEK	1	Unmodified	2383.1941	0.1940913	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		100.67	100.61	3	2.7025E-07	91311	160511_QHF_FH_JSI11i_1	101.71	92.888			0.73493	0.78712	25.194	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81217	0.94061	NaN	1	1	Median	0.66503	0.65867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54455000	29263000	25192000	0	0	0	27475000	15546000	11929000	26980000	13718000	13263000	0	0	0	9005	2887	8508	55782;55783;55784	75266;75267;75268	75266			3	
DQMQPGGTAISVTVPYR	0	Unmodified	1818.8934	0.89343302	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	66.932	66.391	2;3	1.3997E-10	60357	160511_QHF_FH_JSI11i_1	136.24	111.39			1.017	1.0351	43.729	5	5	Median	1.2422	1.0455	NaN	1	1	Median	0.60163	0.69733	77.494	2	2	Median	1.0667	1.0351	NaN	1	1	Median	0.87935	0.91678	NaN	1	1	Median	184380000	100180000	84199000	36553000	18418000	18135000	68655000	40459000	28196000	40670000	20753000	19917000	38502000	20551000	17952000	9006	3090	8509	55785;55786;55787;55788;55789	75269;75270;75271;75272;75273	75269			5	
DQMQQQLNDYEQLLDVK	1	Unmodified	2106.9892	0.9891839	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	96.123	95.877	2;3	6.2762E-22	86781	160511_QHF_FH_JSI10i_1	201.6	187.69			1.0218	0.96693	15.513	10	4	Median	1.1868	0.95885	15.638	2	0	Median	0.89625	1.0532	19.993	2	0	Median	0.92641	0.88827	15.249	3	2	Median	0.9972	1.0225	20.909	3	2	Median	431400000	205560000	225840000	38443000	17096000	21348000	145680000	70087000	75593000	149420000	69322000	80098000	97860000	49059000	48801000	9007	1180	8510	55790;55791;55792;55793;55794;55795;55796;55797;55798;55799	75274;75275;75276;75277;75278;75279;75280;75281;75282;75283;75284;75285;75286;75287;75288;75289;75290;75291	75285			18	
DQMSHLFNVAHTLR	0	Unmodified	1667.8202	0.8202085	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	61.964	61.823	4	3.1872E-05	54847	160511_QHF_FH_JSI11i_3	97.223	86.87			1.1488	1.113	2.8265	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2189	1.1355	NaN	1	0	Median	1.0828	1.091	NaN	1	0	Median	182110000	81754000	100350000	0	0	0	0	0	0	101400000	42894000	58502000	80711000	38860000	41851000	9008	1296	8511	55800;55801	75292;75293;75294	75292			3	
DQNESLDEEMFYK	1	Unmodified	1646.677	0.67701747	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.466	61.833	2	3.5371E-41	55996	160511_QHF_FH_JSI11i_1	207.29	203.53			1.0199	1.0079	12.444	4	0	Median	1.066	0.87482	NaN	1	0	Median	0.98877	1.1799	NaN	1	0	Median	1.0521	1.0371	NaN	1	0	Median	0.93464	0.97952	NaN	1	0	Median	792310000	378900000	413410000	220560000	84225000	136330000	184590000	102480000	82109000	225660000	102760000	122900000	161500000	89439000	72063000	9009	3965	8512	55802;55803;55804;55805	75295;75296;75297;75298;75299;75300;75301;75302;75303;75304	75295			10	
DQNETLDEDLFHK	1	Unmodified	1602.7162	0.71618016	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.005	55.344	3	0.039565	50225	160511_QHF_FH_JSI12i_1	30.107	25.716			0.12946	0.13037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12946	0.13037	NaN	1	1	Median	28326000	26506000	1820700	0	0	0	0	0	0	0	0	0	28326000	26506000	1820700	9010	4363	8513	55806	75305	75305			1	
DQNIFVQK	1	Unmodified	990.51345	0.51344502	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	3	4	3	37.982	34.549	2	0.0011872	31071	160511_QHF_FH_JSI12i_1	110.31	88.782			0.4297	0.45201	109.08	12	12	Median	0.89829	0.73446	139.17	2	2	Median	0.26853	0.32073	134.24	3	3	Median	0.89432	0.88914	128.51	4	4	Median	0.44883	0.49261	109.71	3	3	Median	1836100000	1006200000	829850000	462480000	227620000	234860000	426540000	266340000	160200000	448880000	281210000	167670000	498170000	231040000	267130000	9011	1791	8514	55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818	75306;75307;75308;75309;75310;75311;75312;75313;75314;75315;75316;75317	75308			12	
DQNIFVSR	0	Unmodified	977.49304	0.49304393	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.415	34.828	2	0.020642	31471	160511_QHF_FH_JSI12i_1	56.258	30.521			0.12782	0.13166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12782	0.13166	NaN	1	1	Median	191540000	171960000	19578000	0	0	0	0	0	0	0	0	0	191540000	171960000	19578000	9012	5058	8515	55819	75318	75318			1	
DQNILLGTTYR	0	Unmodified	1292.6725	0.67246486	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	5.62	4	1				6	6			2	6	4	5	65.173	56.909	2	9.7609E-38	51826	160511_QHF_FH_JSI11i_1	201.33	160.34			0.93755	0.99791	54.444	15	8	Median	1.1718	1.0688	21.696	2	0	Median	0.91545	1.1029	32.727	4	3	Median	0.76964	0.7378	68.908	4	2	Median	0.93755	1.0005	74.364	5	3	Median	2737400000	1380300000	1357100000	655210000	327110000	328100000	696280000	415310000	280970000	698130000	308560000	389570000	687750000	329280000	358470000	9013	2094	8516	55820;55821;55822;55823;55824;55825;55826;55827;55828;55829;55830;55831;55832;55833;55834;55835;55836	75319;75320;75321;75322;75323;75324;75325;75326;75327;75328;75329;75330;75331;75332;75333;75334;75335;75336;75337;75338;75339	75320			21	
DQNPEQLAGVGQGR	0	Unmodified	1467.7066	0.70661853	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		35.369	35.115	2	0.010747	31541	160511_QHF_FH_JSI11i_1	45.879	35.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9014	5447	8517	55837	75340	75340			1	
DQNSLSSEQQK	1	Unmodified	1262.5739	0.57387302	3089	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	9.8634	8.1176	2	2.7443E-23	6894	160511_QHF_FH_JSI12i_1	177.06	156.54			1.2351	1.2148	40.219	5	1	Median	2.8236	2.3144	NaN	1	1	Median	1.2351	1.4527	NaN	1	0	Median	1.2331	1.1707	5.2193	2	0	Median	0.74802	0.76741	NaN	1	0	Median	368750000	164840000	203910000	58425000	17633000	40792000	108230000	43614000	64614000	84781000	37909000	46872000	117310000	65686000	51628000	9015	3089	8518	55838;55839;55840;55841;55842	75341;75342;75343;75344;75345	75343			5	
DQNTFQK	1	Unmodified	879.40865	0.4086456	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.6324	9.451	2	0.0083292	7119	160511_QHF_FH_JSI11i_1	86.472	51.367			1.0464	1.1152	96.091	2	2	Median	NaN	NaN	NaN	0	0	Median	1.8815	2.2001	NaN	1	1	Median	0.582	0.56529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	454540000	305010000	149530000	0	0	0	156620000	79932000	76689000	297920000	225080000	72843000	0	0	0	9016	3955	8519	55843;55844	75346;75347	75346			2	
DQNVFDSK	1	Unmodified	951.42977	0.42977497	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	22.869	22.354	2	0.016027	19692	160511_QHF_FH_JSI12i_1	59.597	42.303			0.51627	0.52557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51627	0.52557	NaN	1	1	Median	84710000	45964000	38746000	0	0	0	0	0	0	0	0	0	84710000	45964000	38746000	9017	602	8520	55845;55846	75348;75349	75348			2	
DQNYPGAIAIHHPNVAEK	1	Unmodified	1972.9755	0.97552317	59	CON__P15636			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.41	9	24	19				3	16	13	23	18	23	20	45.833	41.409	2;3;4	1.1367E-53	36101	160511_QHF_FH_JSI9i_2	224.64	203.39		+	0.95628	1.0274	36.595	77	27	Median	0.78053	0.66053	25.256	23	6	Median	0.89648	1.0735	24.102	15	5	Median	1.1923	1.183	36.619	20	9	Median	1.0108	1.1003	24.987	19	7	Median	165540000000	72146000000	93389000000	25110000000	13231000000	11878000000	27736000000	11771000000	15965000000	59776000000	23215000000	36561000000	52913000000	23930000000	28984000000	9018	59	8521	55847;55848;55849;55850;55851;55852;55853;55854;55855;55856;55857;55858;55859;55860;55861;55862;55863;55864;55865;55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883;55884;55885;55886;55887;55888;55889;55890;55891;55892;55893;55894;55895;55896;55897;55898;55899;55900;55901;55902;55903;55904;55905;55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923;55924;55925;55926;55927;55928;55929;55930	75350;75351;75352;75353;75354;75355;75356;75357;75358;75359;75360;75361;75362;75363;75364;75365;75366;75367;75368;75369;75370;75371;75372;75373;75374;75375;75376;75377;75378;75379;75380;75381;75382;75383;75384;75385;75386;75387;75388;75389;75390;75391;75392;75393;75394;75395;75396;75397;75398;75399;75400;75401;75402;75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413;75414;75415;75416;75417;75418;75419;75420;75421;75422;75423;75424;75425;75426;75427;75428;75429;75430;75431;75432;75433;75434;75435;75436;75437;75438;75439;75440;75441;75442;75443;75444;75445;75446;75447;75448;75449;75450;75451;75452;75453;75454;75455;75456;75457;75458;75459;75460;75461;75462;75463;75464;75465;75466;75467;75468;75469;75470;75471;75472;75473;75474;75475;75476;75477;75478;75479;75480;75481;75482;75483;75484;75485;75486;75487;75488;75489;75490;75491;75492;75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509;75510;75511;75512;75513;75514;75515;75516;75517;75518;75519;75520;75521;75522;75523;75524;75525;75526;75527;75528;75529;75530;75531;75532;75533;75534;75535;75536;75537;75538;75539;75540;75541;75542;75543;75544;75545;75546;75547;75548;75549;75550;75551;75552;75553;75554;75555;75556;75557;75558;75559;75560;75561;75562;75563;75564;75565;75566;75567;75568;75569;75570;75571;75572;75573;75574;75575;75576;75577;75578;75579;75580;75581;75582;75583;75584;75585;75586;75587;75588;75589;75590;75591;75592;75593;75594;75595;75596;75597;75598;75599;75600;75601;75602;75603;75604;75605;75606;75607;75608;75609;75610;75611;75612	75474			261	
DQNYPGAIAIHHPNVAEKR	1	Unmodified	2129.0766	0.076634197	59	CON__P15636			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3.9	4.06		4	5						1	2	7	1		39.191	37.04	3;4;5	1.5102E-05	33641	160511_QHF_FH_JSI9i_2	78.012	68.728		+	0.88299	0.99838	30.577	7	1	Median	0.88299	0.75373	NaN	1	0	Median	0.96819	1.1291	29.473	5	0	Median	0.70901	0.65579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	500720000	264600000	236120000	35625000	15881000	19744000	377590000	196530000	181070000	87506000	52196000	35310000	0	0	0	9019	59	8522	55931;55932;55933;55934;55935;55936;55937;55938;55939;55940	75613;75614;75615;75616;75617;75618;75619;75620;75621;75622;75623	75619			10	
DQPAFTPSGILTPHALGSR	0	Unmodified	1964.0116	0.011574324	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	75.695	75.353	3	0.0001367	67322	160511_QHF_FH_JSI11i_3	65.598	48.109			1.2068	1.1567	12.204	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.9559	1.1651	NaN	1	1	Median	1.2219	1.1567	NaN	1	1	Median	0.93785	0.93981	NaN	1	1	Median	381440000	147920000	233520000	0	0	0	126380000	57472000	68904000	164430000	48512000	115910000	90637000	41937000	48700000	9020	4628	8523	55941;55942;55943	75624;75625;75626	75624			3	
DQPIILVLLDITPMMGVLDGVLMELQDCALPLLK	1	Unmodified	3776.0252	0.02517075	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			108.34	102.62	3;4	6.7784E-33	60693	160513_QHF_FH_JSI10Kac_6	132.96	122.8			0.83728	0.97756	7.0447	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83728	0.97756	7.0447	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119720000	55711000	64008000	0	0	0	119720000	55711000	64008000	0	0	0	0	0	0	9021	1503	8524	55944;55945	75627;75628;75629;75630	75629			4	
DQPPNSVEGLLNALR	0	Unmodified	1621.8424	0.84238373	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	100.03	99.912	2;3	1.584E-14	90533	160511_QHF_FH_JSI12i_1	156.51	100.96			1.0326	1.0578	12.094	8	0	Median	1.5337	1.2588	14.473	2	0	Median	0.89659	1.0368	4.0822	2	0	Median	1.0222	0.99147	7.9267	2	0	Median	1.0547	1.0761	9.3921	2	0	Median	418310000	217580000	200720000	86700000	36017000	50684000	122500000	63026000	59472000	98283000	54683000	43600000	110830000	63859000	46966000	9022	5015	8525	55946;55947;55948;55949;55950;55951;55952;55953	75631;75632;75633;75634;75635;75636;75637;75638;75639;75640;75641;75642;75643;75644	75637			14	
DQPQFQNMR	0	Unmodified	1162.5189	0.5189411	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	29.777	29.096	2	0.00034521	25412	160511_QHF_FH_JSI9i_1	91.9	76.64			0.90043	0.83076	44.2	4	4	Median	1.209	0.9753	NaN	1	1	Median	0.51875	0.60673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.0804	59.839	2	2	Median	849650000	444010000	405640000	179530000	77851000	101680000	237680000	136220000	101470000	0	0	0	432430000	229940000	202490000	9023	1830	8526	55954;55955;55956;55957	75645;75646;75647;75648	75648			4	
DQPSAYSK	1	Unmodified	894.40831	0.40831125	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	11.816	4.5495	2	0.0031596	6653	160511_QHF_FH_JSI11i_1	73.665	24.306			2.4799	2.296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4799	2.296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3295400	1426700	1868800	0	0	0	0	0	0	3295400	1426700	1868800	0	0	0	9024	1568	8527	55958;55959;55960;55961;55962	75649;75650;75651;75652;75653	75649			5	
DQQIGEK	1	Unmodified	816.39775	0.39774656	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.4	5.39	6				4						3	4	3	6.9773	3.9389	2	0.0041268	2349	160513_QHF_FH_JSI11Kac_2	102.71	24.965			0.4963	0.50245	71.022	10	10	Median	NaN	NaN	NaN	0	0	Median	0.39514	0.46886	92.49	3	3	Median	0.90685	0.88445	80.335	4	4	Median	0.47634	0.50265	65.002	3	3	Median	2186800000	1220600000	966200000	0	0	0	817860000	497520000	320350000	677620000	358830000	318790000	691330000	364260000	327060000	9025	1674	8528	55963;55964;55965;55966;55967;55968;55969;55970;55971;55972	75654;75655;75656;75657;75658;75659;75660;75661;75662;75663	75657			10	
DQQPGTFLLR	0	Unmodified	1173.6142	0.6142217	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	57.788	56.891	2	0.00047655	50454	160511_QHF_FH_JSI9i_1	88.181	73.316			1.2661	1.1684	5.9297	2	1	Median	1.4912	1.2184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.075	1.1204	NaN	1	0	Median	131130000	56895000	74234000	67767000	24956000	42810000	0	0	0	0	0	0	63362000	31939000	31423000	9026	1528	8529	55973;55974;55975	75664;75665;75666	75665			2	
DQQQNEIIVK	1	Unmodified	1213.6303	0.63026569	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.374	27.818	2	0.00090808	24889	160511_QHF_FH_JSI12i_1	74.533	56.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9027	426	8530	55976	75667	75667			1	
DQQVLDVK	1	Unmodified	943.49746	0.4974606	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.86	5.62	4				2	1				2		2	3	33.973	29.121	2	1.0198E-05	26265	160511_QHF_FH_JSI12i_1	120.15	71.981			1.9042	1.9671	155.25	6	6	Median	2.3188	1.8962	190.44	2	2	Median	NaN	NaN	NaN	0	0	Median	3.485	3.3632	127.87	2	2	Median	0.6189	0.67443	203.41	2	2	Median	552060000	217160000	334900000	308520000	110730000	197790000	0	0	0	239020000	103990000	135040000	4525000	2450200	2074700	9028	5254	8531	55977;55978;55979;55980;55981;55982;55983	75668;75669;75670;75671;75672;75673;75674;75675	75670			8	
DQREEELGEYYMK	1	Unmodified	1688.7352	0.73520105	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	1	By MS/MS		By MS/MS		1	0	2									1		1		47.415	47.005	2;3	0.0030941	42111	160511_QHF_FH_JSI9i_1	71.016	49.644			1.8833	1.8009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8833	1.8009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62047000	17788000	44260000	0	0	0	0	0	0	62047000	17788000	44260000	0	0	0	9029	116	8532	55984;55985	75676;75677	75677			2	
DQSAQCTASK	1	Unmodified	1094.4662	0.46623683	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	4.8394	4.4978	2	0.00017001	2444	160511_QHF_FH_JSI12i_1	94.692	69.749			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37483000	0	37483000	0	0	0	0	0	0	0	0	0	37483000	0	37483000	9030	3290	8533	55986	75678	75678			1	
DQSAVVVQGLPEGVAFK	1	Unmodified	1742.9203	0.9202997	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	80.869	80.394	2;3	6.3617E-13	73314	160511_QHF_FH_JSI12i_1	187.97	161.85			1.0254	1.034	12.248	9	3	Median	1.2254	1.0086	7.9482	2	1	Median	0.81399	0.9495	3.8917	2	0	Median	1.0103	0.98653	9.1856	2	0	Median	1.0254	1.0448	16.391	3	2	Median	1036100000	451740000	584330000	165770000	78153000	87618000	217410000	99917000	117490000	250420000	118790000	131620000	402480000	154880000	247600000	9031	2087	8534	55987;55988;55989;55990;55991;55992;55993;55994;55995	75679;75680;75681;75682;75683;75684;75685;75686;75687;75688;75689;75690;75691;75692;75693;75694	75687			16	
DQSGVQELVK	1	Unmodified	1101.5666	0.5666028	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	37.847	37.3	2	2.9956E-05	33893	160511_QHF_FH_JSI12i_1	105.98	70.68			0.60048	0.64153	64.235	5	5	Median	2.8883	2.3505	NaN	1	1	Median	0.54082	0.64153	NaN	1	1	Median	0.8716	0.84898	52.622	2	2	Median	0.48728	0.50604	NaN	1	1	Median	243740000	126470000	117270000	34995000	9891400	25104000	45398000	26125000	19273000	117000000	62197000	54805000	46340000	28253000	18086000	9032	3079	8535	55996;55997;55998;55999;56000;56001	75695;75696;75697;75698;75699;75700	75697			6	
DQSIAPK	1	Unmodified	757.39702	0.39701828	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8	5.73	2				1	2				1	1	3		11.856	7.2679	2	0.0081927	4155	160513_QHF_FH_JSI11Kac_2	87.754	55.284			1.0659	1.0742	34.686	5	0	Median	1.491	1.2166	NaN	1	0	Median	0.91223	1.0742	NaN	1	0	Median	1.0659	1.0362	47.613	3	0	Median	NaN	NaN	NaN	0	0	Median	1759300000	754110000	1005200000	851790000	354710000	497070000	3563500	1688100	1875300	903950000	397710000	506240000	0	0	0	9033	817	8536	56002;56003;56004;56005;56006	75701;75702;75703;75704;75705	75702			5	
DQSLGNWR	0	Unmodified	974.45699	0.45699277	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	32.089	31.681	2	0.0030807	28472	160511_QHF_FH_JSI12i_1	75.243	50.349			1.4966	1.4715	11.313	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4611	1.3584	NaN	1	0	Median	1.533	1.5941	NaN	1	0	Median	131900000	61789000	70116000	0	0	0	0	0	0	67980000	31259000	36721000	63925000	30530000	33395000	9034	2207	8537	56007;56008	75706	75706			1	
DQSNKPVK	2	Acetyl (K)	956.49271	0.49270958	5516	Q9Y2F5	ICE1	Little elongation complex subunit 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	11.972	4.6923	2	0.026417	4006	160513_QHF_FH_JSI11Kac_2	58.815	41.048			0.95672	0.98163	25.968	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2284	1.1795	NaN	1	0	Median	0.74514	0.81696	NaN	1	0	Median	3274900	1664500	1610400	0	0	0	0	0	0	1938500	911530	1027000	1336400	752930	583450	9035	5516	8538	56009;56010	75707	75707	3468		1	
DQSVGDPK	1	Unmodified	844.39266	0.39266118	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.2121	6.8599	2	0.03729	4783	160511_QHF_FH_JSI12i_1	48.561	33.786			0.54807	0.56353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54807	0.56353	NaN	1	1	Median	189490000	119520000	69967000	0	0	0	0	0	0	0	0	0	189490000	119520000	69967000	9036	2489	8539	56011	75708	75708			1	
DQTASAPATPLVNK	1	Unmodified	1411.7307	0.73070802	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.236	36.637	2	0.0008525	33204	160511_QHF_FH_JSI12i_1	85.813	69.142			0.46992	0.46994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46992	0.46994	NaN	1	1	Median	25121000	22436000	2684400	0	0	0	0	0	0	0	0	0	25121000	22436000	2684400	9037	2862	8540	56012	75709	75709			1	
DQTDFEHR	0	Unmodified	1046.4417	0.44173664	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.496	10.112	2	0.0011324	7753	160511_QHF_FH_JSI11i_1	93.598	66.477			1.0867	1.0828	5.7519	4	0	Median	1.4646	1.1874	NaN	1	0	Median	0.88578	1.037	NaN	1	0	Median	1.1409	1.0924	NaN	1	0	Median	1.0351	1.0733	NaN	1	0	Median	354190000	188880000	165320000	51621000	21525000	30097000	107170000	64924000	42250000	105820000	55717000	50107000	89576000	46715000	42862000	9038	897	8541	56013;56014;56015;56016	75710;75711;75712;75713;75714;75715;75716	75711			7	
DQTEATQEK	1	Unmodified	1048.4673	0.46728269	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.2541	5.0307	2	7.0493E-05	2883	160511_QHF_FH_JSI11i_1	96.331	63.491			1.156	1.1619	43.004	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6162	1.5748	NaN	1	0	Median	0.82687	0.85722	NaN	1	0	Median	104870000	47013000	57857000	0	0	0	0	0	0	58414000	22060000	36354000	46455000	24953000	21503000	9039	4560	8542	56017;56018	75717;75718;75719	75717			3	
DQTKPTPLILDEQGR	1	Unmodified	1709.8948	0.89481323	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.885	47.204	3	4.2954E-05	41967	160511_QHF_FH_JSI9i_1	99.238	93.767			1.0276	1.0029	8.8134	4	0	Median	1.2653	1.0351	NaN	1	0	Median	0.77635	0.91881	NaN	1	0	Median	1.1395	1.1282	NaN	1	0	Median	0.92666	0.97167	NaN	1	0	Median	594990000	304920000	290080000	101160000	41956000	59205000	133580000	72392000	61193000	199270000	91846000	107430000	160970000	98722000	62250000	9040	327	8543	56019;56020;56021;56022	75720;75721;75722;75723;75724;75725;75726;75727	75727			8	
DQTPDENDQVIVK	1	Unmodified	1499.7104	0.71036651	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	32.973	32.37	2	5.6277E-22	28950	160511_QHF_FH_JSI11i_1	171.67	149.58			0.78136	0.77515	7.0476	4	1	Median	0.8987	0.75117	NaN	1	1	Median	0.75295	0.87755	NaN	1	0	Median	0.81085	0.7894	NaN	1	0	Median	0.72774	0.76116	NaN	1	0	Median	953260000	467200000	486050000	207810000	97227000	110580000	243550000	125000000	118550000	263680000	128020000	135670000	238210000	116960000	121250000	9041	5153	8544	56023;56024;56025;56026;56027	75728;75729;75730;75731;75732;75733;75734	75728			7	
DQTPDENDQVVVK	1	Unmodified	1485.6947	0.69471644	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.12	4			2	1					1	1	2	3	31.168	27.151	2	1.421E-15	24523	160511_QHF_FH_JSI12i_1	164.43	144.64			1.0681	1.0728	11.38	7	0	Median	1.0492	0.84434	NaN	1	0	Median	0.8789	1.0672	NaN	1	0	Median	1.0875	1.0805	1.0165	2	0	Median	1.0681	1.1685	8.5112	3	0	Median	989430000	529540000	459880000	260530000	112460000	148060000	286590000	165680000	120920000	241550000	129080000	112460000	200760000	122320000	78439000	9042	132	8545	56028;56029;56030;56031;56032;56033;56034	75735;75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747	75738			13	
DQTVIQNTDGNNNEAWAK	1	Unmodified	2016.9137	0.91371077	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	3	1	44.439	43.864	2;3	4.5446E-16	39666	160511_QHF_FH_JSI12i_1	192.86	168.01		+	0.70081	0.70881	67.547	6	5	Median	1.2881	1.0527	NaN	1	1	Median	0.80349	0.95217	NaN	1	1	Median	0.33162	0.32387	70.155	3	3	Median	0.63382	0.66146	NaN	1	0	Median	632940000	418040000	214900000	73305000	33852000	39453000	94287000	48430000	45857000	340180000	255470000	84707000	125170000	80293000	44881000	9043	66	8546	56035;56036;56037;56038;56039;56040	75748;75749;75750;75751;75752;75753;75754;75755	75751			8	
DQVAIHEAMEQQTISITK	1	Unmodified	2041.015	0.015004722	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		1	3	61.935	61.031	2;3	6.239E-12	52395	160511_QHF_FH_JSI12i_2	135.49	119.18			0.3935	0.37802	111.6	3	3	Median	2.9428	2.4798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3935	0.37802	NaN	1	1	Median	0.30451	0.34202	NaN	1	1	Median	197730000	115260000	82467000	75662000	22233000	53430000	0	0	0	36581000	30852000	5729400	85487000	62179000	23308000	9044	2545	8547	56041;56042;56043;56044;56045	75756;75757;75758;75759;75760;75761	75757			6	
DQVANSAFVER	0	Unmodified	1234.5942	0.59421454	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	5.66	5	2	3		3	4	3			4	6	5	5	36.021	30.596	2	1.116E-35	18329	160513_QHF_FH_JSI11Kac_3	196.48	155.5			0.96092	1.0062	16.665	20	6	Median	1.0685	0.93401	19.981	4	2	Median	0.79315	0.93924	21.173	6	1	Median	1.1155	1.0844	7.5479	5	1	Median	0.95827	1.0313	8.2164	5	2	Median	24611000000	11349000000	13263000000	4884800000	1922700000	2962100000	5006200000	2685800000	2320300000	5106800000	2327400000	2779400000	9613500000	4412700000	5200800000	9045	880	8548	56046;56047;56048;56049;56050;56051;56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063;56064;56065	75762;75763;75764;75765;75766;75767;75768;75769;75770;75771;75772;75773;75774;75775;75776;75777;75778;75779;75780;75781;75782;75783;75784;75785;75786;75787;75788;75789;75790;75791;75792;75793;75794	75773			33	
DQVDIAVQELLQLK	1	Unmodified	1610.8879	0.88793694	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	2	1	102.01	101.93	2;3	3.6706E-156	92506	160511_QHF_FH_JSI12i_1	307.55	288.31			0.84496	0.8694	8.1674	6	0	Median	1.1332	0.91736	NaN	1	0	Median	0.7873	0.93125	12.812	2	0	Median	0.84755	0.8247	2.2019	2	0	Median	0.82907	0.88862	NaN	1	0	Median	1548600000	791210000	757370000	230120000	109390000	120730000	520400000	246900000	273490000	423860000	238330000	185530000	374200000	196580000	177620000	9046	878	8549	56066;56067;56068;56069;56070;56071;56072;56073	75795;75796;75797;75798;75799;75800;75801;75802;75803;75804;75805;75806	75799			12	
DQVELVENMVTVGK	1	Unmodified	1559.7865	0.78650834	4920	Q9NQE9	HINT3	Histidine triad nucleotide-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		81.799	81.345	2	0.00010507	73833	160511_QHF_FH_JSI10i_1	113.77	93.464			0.99218	1.7224	48.518	3	3	Plateau	0.99218	0.80996	NaN	1	1	Median	1.7178	1.9961	NaN	1	1	Median	0.9731	0.93268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96769000	48082000	48687000	17722000	9310600	8411400	49429000	23022000	26407000	29618000	15749000	13869000	0	0	0	9047	4920	8550	56074;56075;56076	75807;75808;75809	75808			3	
DQVFIFLK	1	Unmodified	1008.5644	0.56441796	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.15	1	2					2	4		2	3	1	3	85.931	77.946	2	0.0050886	37296	160513_QHF_FH_JSI10Kac_5	79.116	64.34			0.84387	0.9085	18.827	7	1	Median	1.053	0.87395	NaN	1	0	Median	0.57447	0.61745	32.464	3	1	Plateau	0.96116	0.91739	NaN	1	0	Median	0.81485	0.89327	2.3898	2	0	Median	42364000	25681000	16683000	2976100	1418400	1557700	17847000	10258000	7588800	6609800	3998200	2611600	14932000	10007000	4925100	9048	2305	8551	56077;56078;56079;56080;56081;56082;56083;56084;56085	75810;75811;75812;75813;75814;75815;75816;75817	75817			8	
DQVGILAGWFK	1	Unmodified	1232.6554	0.65535823	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.59	100.44	2	8.8678E-05	88134	160511_QHF_FH_JSI11i_2	99.653	79.866			0.87739	0.85335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87739	0.85335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8775200	5122400	3652800	0	0	0	0	0	0	8775200	5122400	3652800	0	0	0	9049	2913	8552	56086	75818	75818			1	
DQVIYPDGR	0	Unmodified	1061.5142	0.5141733	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	28.565	27.65	2	0.015503	24098	160511_QHF_FH_JSI9i_1	54.416	39.266			0.59923	0.48105	NaN	1	1	Median	0.59923	0.48105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20464000	17096000	3368100	13108000	9739500	3368100	0	0	0	0	0	0	7356600	7356600	0	9050	1304	8553	56087;56088	75819;75820	75820			2	
DQVIYPDGREDQK	1	Unmodified	1561.7372	0.73724996	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	1	0	3										1	1	1	24.318	23.991	3	0.0008892	21151	160511_QHF_FH_JSI12i_1	58.071	23.065			1.1386	1.1992	6.9409	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0895	1.31	NaN	1	0	Median	1.1646	1.1423	NaN	1	0	Median	1.1386	1.1992	NaN	1	0	Median	405710000	213320000	192390000	0	0	0	126500000	70428000	56067000	138950000	70027000	68920000	140270000	72865000	67400000	9051	1304	8554	56089;56090;56091	75821	75821			1	
DQVIYPDSVEDMQR	0	Unmodified	1693.7618	0.76175015	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.481	56.829	2	0.00010139	51233	160511_QHF_FH_JSI10i_1	109.24	95.272			0.87518	0.96001	7.371	4	1	Linear	1.1579	0.9507	NaN	1	1	Median	0.83225	0.96941	NaN	1	0	Median	0.93262	0.8749	NaN	1	0	Median	1.005	1.0469	NaN	1	0	Median	174440000	92751000	81685000	38442000	17125000	21318000	50981000	31317000	19665000	49619000	26282000	23337000	35394000	18028000	17366000	9052	1406	8555	56092;56093;56094;56095	75822;75823;75824;75825	75824			4	
DQVLAMLEK	1	Unmodified	1045.5478	0.54778161	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	68.812	68.276	2	0.00052067	60629	160511_QHF_FH_JSI9i_1	79.148	60.373			0.94042	0.86882	53.005	5	2	Median	1.0478	0.86882	NaN	1	0	Median	0.94042	1.1147	NaN	1	0	Median	1.0691	1.0297	103.47	2	2	Median	0.81662	0.85915	NaN	1	0	Median	233920000	107610000	126310000	45769000	21766000	24002000	45521000	24517000	21004000	92194000	36605000	55588000	50437000	24725000	25712000	9053	2485	8556	56096;56097;56098;56099;56100	75826;75827;75828;75829;75830;75831	75831			6	
DQVLQNLGSVESYSEEK	1	Unmodified	1923.9062	0.90616578	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	69.251	68.756	2	1.3455E-10	62575	160511_QHF_FH_JSI12i_1	169.04	144.75			0.26196	0.26082	118.8	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62561	0.6042	NaN	1	1	Median	0.10969	0.11259	NaN	1	1	Median	38246000	32219000	6026800	0	0	0	0	0	0	19318000	14705000	4613800	18928000	17514000	1413000	9054	3276	8557	56101;56102	75832;75833;75834;75835	75834			4	
DQVQQAR	0	Unmodified	843.41988	0.41987898	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	5	5.66	4					2				1	2	2	1	4.6803	2.0302	2	0.0030918	2288	160511_QHF_FH_JSI12i_1	106.76	47.12			0.97777	1.0349	27.824	6	1	Median	1.3461	1.1048	NaN	1	1	Median	0.72852	0.85148	49.452	2	0	Median	0.88889	0.87907	29.64	2	0	Median	0.94173	0.98792	NaN	1	0	Median	1182100000	536960000	645110000	107480000	47284000	60192000	427020000	199080000	227940000	345670000	147190000	198480000	301900000	143400000	158500000	9055	434	8558	56103;56104;56105;56106;56107;56108	75836;75837;75838;75839;75840	75836			5	
DQVTAQEIFQDNHEDGPTAK	1	Unmodified	2242.0138	0.013818748	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.21	0.41	11	3								4	3	4	3	52.978	52.218	2;3	2.5287E-184	46990	160511_QHF_FH_JSI10i_1	312.02	283.81			0.84554	0.87292	36.509	12	4	Median	1.0224	0.80967	51.626	3	1	Median	0.84383	0.97391	20.008	3	1	Median	0.98184	0.95064	49.227	3	1	Plateau	0.78531	0.83288	7.5366	3	1	Plateau	5301400000	2681400000	2620000000	1123900000	583060000	540860000	1396200000	708440000	687800000	1296600000	696610000	599960000	1484700000	693300000	791360000	9056	1024	8559	56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120;56121;56122	75841;75842;75843;75844;75845;75846;75847;75848;75849;75850;75851;75852;75853;75854;75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868;75869;75870;75871;75872;75873;75874;75875;75876	75866			36	
DQVVILHHMLSK	1	Oxidation (M)	1434.7653	0.76531938	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				44.658	35.502	3	0.018825	18873	160513_QHF_FH_JSI9Kac_6	31.656	18.456			0.91175	0.79355	NaN	1	0	Median	0.91175	0.79355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9774200	4810900	4963200	9774200	4810900	4963200	0	0	0	0	0	0	0	0	0	9057	4623	8560	56123	75877	75877		2503	1	
DQVVILHHMLSK	1	Unmodified	1418.7704	0.77040476	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									8	2	4		2	63.778	54.832	2;3	3.1185E-05	30051	160513_QHF_FH_JSI10Kac_6	92.935	72.553			1.3532	1.1395	111.96	5	4	Median	1.3532	1.1395	NaN	1	0	Median	1.1359	1.3393	168.46	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.1064	146.15	2	2	Median	178500000	66501000	112000000	31580000	10863000	20717000	105630000	37745000	67888000	0	0	0	41288000	17893000	23396000	9058	4623	8560	56124;56125;56126;56127;56128;56129;56130;56131	75878;75879;75880;75881;75882;75883;75884;75885;75886	75883			9	
DQVYPQYVIEYTEDK	1	Unmodified	1888.8731	0.87307474	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	77.608	77.319	2	4.2486E-05	70105	160511_QHF_FH_JSI10i_1	117.2	101.66			0.94111	0.95279	32.705	3	3	Median	NaN	NaN	NaN	0	0	Median	0.87785	1.0086	46.018	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94111	0.95279	NaN	1	1	Median	91019000	43619000	47400000	0	0	0	62443000	30688000	31755000	0	0	0	28576000	12930000	15645000	9059	3250	8561	56132;56133;56134	75887;75888;75889	75888			3	
DQWAAAMTLR	0	Unmodified	1161.5601	0.56007764	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	62.513	61.868	2	0.0023523	52915	160511_QHF_FH_JSI12i_2	63.624	48.473			2.2516	2.3304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2516	2.3304	NaN	1	1	Median	52658000	18467000	34191000	0	0	0	0	0	0	0	0	0	52658000	18467000	34191000	9060	1936	8562	56135;56136	75890;75891	75890			2	
DQWYNVLEFSR	0	Unmodified	1455.6783	0.67827852	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	89.684	89.146	2	0.00071433	78323	160511_QHF_FH_JSI11i_2	81.865	75.012			1.9696	2.0596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9696	2.0596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21996000	8145800	13850000	0	0	0	0	0	0	21996000	8145800	13850000	0	0	0	9061	4418	8563	56137;56138	75892;75893	75893			2	
DQYANYVVQK	1	Unmodified	1226.5932	0.5931519	2555;3692	Q14671;Q8TB72	PUM1;PUM2	Pumilio homolog 1;Pumilio homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	39.986	36.546	2	1.4221E-05	33150	160511_QHF_FH_JSI12i_1	100.84	76.017			1.405	1.4237	60.909	6	2	Median	3.6419	2.9636	NaN	1	0	Median	0.59574	0.70604	NaN	1	0	Median	1.6443	1.5953	66.549	2	1	Median	1.27	1.3372	59.325	2	1	Median	321530000	158960000	162560000	58838000	15263000	43575000	94656000	55114000	39542000	89376000	48880000	40495000	78657000	39705000	38952000	9062	2555;3692	8564	56139;56140;56141;56142;56143;56144	75894;75895;75896;75897;75898;75899;75900;75901;75902;75903	75897			10	
DQYFLDK	1	Unmodified	927.4338	0.43379771	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	41.392	40.838	2	0.013688	36872	160511_QHF_FH_JSI12i_1	69.423	0			2.3273	2.1077	104.78	6	6	Median	2.5145	2.1182	NaN	1	1	Median	0.98077	1.1493	162.78	2	2	Median	1.0851	1.0492	97.954	2	2	Median	4.7067	4.8486	NaN	1	1	Median	282450000	135360000	147090000	32827000	13230000	19597000	94695000	49195000	45499000	107100000	56420000	50676000	47834000	16512000	31322000	9063	5479	8565	56145;56146;56147;56148;56149;56150	75904;75905;75906;75907;75908;75909	75906			6	
DQYLGHLQQYVAAYQQLTSEK	1	Unmodified	2482.2129	0.21285291	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	100.28	100.26	3	1.1846E-10	86706	160511_QHF_FH_JSI12i_3	112.32	109.13			1.0686	0.85369	18.854	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6974	0.85369	NaN	1	0	Median	0.90527	0.8269	NaN	1	0	Median	1.1417	1.1633	NaN	1	0	Median	246710000	127430000	119280000	0	0	0	45183000	28064000	17119000	92325000	48211000	44114000	109200000	51159000	58045000	9064	2270	8566	56151;56152;56153	75910;75911;75912;75913;75914	75914			5	
DQYNLLK	1	Unmodified	892.46543	0.46543219	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	39.461	38.752	2	0.0094456	35174	160511_QHF_FH_JSI12i_1	79.116	34.505			0.7566	1.2645	37.969	3	0	Plateau	0.7566	0.63056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3161	1.2741	NaN	1	0	Median	0.67649	0.69955	NaN	1	0	Median	406110000	206770000	199340000	118120000	61445000	56672000	0	0	0	161280000	83052000	78226000	126710000	62269000	64443000	9065	446	8567	56154;56155;56156	75915;75916;75917;75918	75916			4	
DQYSVIFESGDR	0	Unmodified	1414.6365	0.63647328	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	60.676	58.263	2	8.1011E-08	52717	160511_QHF_FH_JSI11i_1	137.89	120.03			0.70316	0.80051	10.937	5	0	Median	1.1455	0.94821	NaN	1	0	Median	0.67452	0.80088	9.9786	2	0	Median	0.82646	0.80051	NaN	1	0	Median	0.68503	0.72368	NaN	1	0	Median	990320000	527430000	462890000	216180000	88271000	127910000	284750000	169250000	115500000	277420000	153720000	123710000	211960000	116190000	95772000	9066	1867	8568	56157;56158;56159;56160;56161	75919;75920;75921;75922;75923;75924;75925;75926;75927;75928	75919			10	
DRAEAEAR	0	Unmodified	916.43626	0.43625733	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	0	0	0	1		By MS/MS			1.5	0.5	1	1									2			0.4765	0.18414	3	0.020542	143	160511_QHF_FH_JSI10i_2	37.591	16.291			0.51307	0.57996	38.972	2	0	Median	NaN	NaN	NaN	0	0	Median	0.51307	0.57996	38.972	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26817000	17680000	9137500	0	0	0	26817000	17680000	9137500	0	0	0	0	0	0	9067	1436;1437;1445	8569	56162;56163	75929	75929			1	
DRAEEPMATEPAPAGAPGDLGSQPPAAK	1	Unmodified	2730.2919	0.29190786	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.245	50.571	3	4.0328E-14	44890	160511_QHF_FH_JSI9i_1	86.527	83.804			0.97042	0.96919	3.0379	4	0	Median	1.2485	1.024	NaN	1	0	Median	0.81606	0.95767	NaN	1	0	Median	0.99516	0.97477	NaN	1	0	Median	0.9463	0.96364	NaN	1	0	Median	361120000	182360000	178760000	90210000	41976000	48235000	90540000	49203000	41336000	95472000	51481000	43992000	84898000	39696000	45202000	9068	485	8570	56164;56165;56166;56167	75930;75931;75932;75933;75934;75935;75936;75937;75938;75939	75939			10	
DRAGSIVLK	1	Unmodified	957.56073	0.56072956	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				22.369	21.099	3	0.059206	16916	160511_QHF_FH_JSI9i_3	28.958	5.5293			2.1123	1.7595	NaN	1	1	Median	2.1123	1.7595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73018000	27615000	45403000	73018000	27615000	45403000	0	0	0	0	0	0	0	0	0	9069	296	8571	56168	75940	75940			1	
DRCTLAEK	1	Unmodified	991.47568	0.4756793	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.1	1	6	5					3		1	4	5	5	8.2603	6.1746	2;3	0.0024393	3679	160513_QHF_FH_JSI11Kac_5	70.1	22.902			0.93073	0.91907	24.993	15	1	Median	1.0973	0.91265	NaN	1	0	Median	0.75887	0.90671	42.189	4	1	Median	0.92965	0.91421	2.2205	5	0	Median	1.0842	1.1892	10.934	5	0	Median	11218000000	5609800000	5608000000	697980000	315170000	382810000	2777600000	1660200000	1117500000	5808800000	2708300000	3100500000	1933400000	926140000	1007200000	9070	1236	8572	56169;56170;56171;56172;56173;56174;56175;56176;56177;56178;56179;56180;56181;56182;56183	75941;75942;75943;75944;75945;75946;75947;75948;75949;75950;75951;75952;75953	75948			13	
DRDMDELKK	2	Unmodified	1148.5496	0.54957253	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		12.38	12.38	2;3	0.004404	9898	160511_QHF_FH_JSI11i_3	93.649	59.396			0.58306	0.54917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58306	0.54917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	198500000	106370000	92137000	0	0	0	0	0	0	198500000	106370000	92137000	0	0	0	9071	821	8573	56184;56185	75954;75955	75955			2	
DRDPEAQFEMPYVVR	0	Unmodified	1850.8621	0.8621329	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	69.126	68.423	2;3	0.00012579	60802	160511_QHF_FH_JSI10i_2	80.632	70.165			0.71442	0.80879	2.6885	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67148	0.82431	NaN	1	0	Median	0.7601	0.79356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	150620000	79565000	71051000	0	0	0	72164000	36524000	35640000	78451000	43040000	35411000	0	0	0	9072	197	8574	56186;56187;56188;56189	75956;75957;75958;75959	75958			4	
DRDVTFSPATIENELIK	1	Unmodified	1946.9949	0.99492121	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	90.792	90.328	3	2.2324E-08	79516	160511_QHF_FH_JSI9i_2	131.48	121.73			1.1785	1.1473	23.525	9	4	Median	1.2847	1.1057	NaN	1	0	Median	0.78846	0.97357	7.7241	2	1	Median	1.2048	1.1965	3.2611	2	1	Median	1.1799	1.3026	31.088	4	2	Median	472370000	219730000	252650000	41446000	16893000	24552000	110080000	60288000	49789000	113390000	48693000	64696000	207460000	93852000	113610000	9073	1849	8575	56190;56191;56192;56193;56194;56195;56196;56197;56198;56199	75960;75961;75962;75963;75964;75965;75966;75967;75968;75969;75970;75971;75972;75973;75974;75975;75976;75977;75978;75979;75980;75981	75965			22	
DREMFGYMK	1	Unmodified	1175.5104	0.51035025	674	O95298;E9PQ53	NDUFC2;NDUFC2-KCTD14	NADH dehydrogenase [ubiquinone] 1 subunit C2;NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	40.95	40.81	3	0.0005838	34919	160511_QHF_FH_JSI12i_3	76.465	67.276			0.39685	0.36904	110.11	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39685	0.36904	NaN	1	1	Median	0.82153	0.86765	139.2	2	2	Median	139980000	74494000	65489000	0	0	0	0	0	0	44934000	29238000	15696000	95049000	45256000	49793000	9074	674	8576	56200;56201;56202	75982;75983;75984	75984			3	
DREVGIPPEQSLETAK	1	Unmodified	1767.9003	0.90029254	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	45.43	44.908	3	0.0034167	40605	160511_QHF_FH_JSI11i_1	54.768	44.283			0.48946	0.48931	105.97	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2428	0.23129	NaN	1	1	Median	0.9867	1.0352	NaN	1	1	Median	383790000	322620000	61175000	0	0	0	0	0	0	321110000	291880000	29232000	62677000	30733000	31943000	9075	1939	8577	56203;56204	75985;75986	75985			2	
DREVNAVDSEHEK	1	Unmodified	1526.6961	0.69611342	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	8.8615	8.9265	3	1.5767E-05	6572	160511_QHF_FH_JSI11i_3	103.14	89.474			0.87245	0.80152	36.024	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87245	0.80152	NaN	1	0	Median	0.81316	0.84268	50.781	2	2	Median	241740000	121570000	120180000	0	0	0	0	0	0	138750000	66470000	72275000	103000000	55097000	47901000	9076	1060	8578	56205;56206;56207	75987;75988;75989;75990	75988			4	
DRFIQLLSDQSDQSVLIQK	1	Unmodified	2232.175	0.17501084	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							3	3	2	1	86.906	86.25	3	1.0202E-24	70491	160511_QHF_FH_JSI9i_3	175.8	163.31			0.76161	0.77145	15.263	8	1	Median	0.85217	0.71706	11.788	2	0	Median	0.68473	0.80899	12.458	3	1	Plateau	0.95676	0.91811	19.569	2	0	Median	0.76006	0.76358	NaN	1	0	Median	613190000	309140000	304060000	199520000	89098000	110420000	177920000	93359000	84565000	206230000	114320000	91910000	29517000	12361000	17156000	9077	686	8579	56208;56209;56210;56211;56212;56213;56214;56215;56216	75991;75992;75993;75994;75995;75996;75997;75998;75999;76000;76001;76002;76003;76004;76005;76006;76007;76008;76009	76000			18	
DRFLGGLVK	1	Unmodified	1003.5815	0.581465	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		51.118	50.066	2;3	2.4393E-05	41915	160511_QHF_FH_JSI10i_3	97.456	66.383			0.85083	0.78307	24.682	6	1	Median	0.9728	0.78307	17.517	2	0	Median	0.69573	0.78364	28.143	2	0	Median	0.784	0.73451	43.495	2	1	Median	NaN	NaN	NaN	0	0	Median	1018600000	585500000	433150000	258960000	97534000	161430000	207930000	126470000	81457000	551760000	361490000	190270000	0	0	0	9078	4399	8580	56217;56218;56219;56220;56221;56222	76010;76011;76012;76013;76014	76011			5	
DRFSDFLLTK	1	Unmodified	1240.6452	0.64518747	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		67.706	67.706	3	0.022629	60293	160511_QHF_FH_JSI11i_3	39.266	30.311			2.4786	2.2949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4786	2.2949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13932000	3259500	10673000	0	0	0	0	0	0	13932000	3259500	10673000	0	0	0	9079	4750	8581	56223	76015	76015			1	
DRFVNDYDK	1	Unmodified	1170.5306	0.53055165	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	20.8	20.561	2;3	0.0092335	17605	160511_QHF_FH_JSI9i_2	89.355	45.547			1.1646	1.0721	8.5649	4	2	Median	1.1541	0.98582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1368	1.0721	7.8649	2	1	Median	1.1753	1.1776	NaN	1	0	Median	341720000	167720000	174000000	39075000	16323000	22752000	0	0	0	249700000	125330000	124380000	52937000	26067000	26870000	9080	2524	8582	56224;56225;56226;56227	76016;76017;76018;76019	76019			4	
DRGFELTFK	1	Unmodified	1111.5662	0.56620887	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	3.85		3	7						1	2	3	3	3	54.398	52.804	2;3	0.0020621	46717	160511_QHF_FH_JSI10i_2	56.359	48.713			0.98047	0.96826	18.544	11	1	Median	1.19	0.97481	8.1581	2	0	Median	0.97816	1.138	22.764	3	0	Median	0.98047	0.93931	6.6408	3	0	Median	0.88184	0.90891	17.374	3	1	Median	1574600000	763870000	810750000	97189000	45619000	51571000	261850000	120890000	140960000	675970000	332130000	343840000	539610000	265220000	274380000	9081	1486	8583	56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238	76020;76021;76022;76023;76024;76025;76026;76027;76028;76029;76030;76031;76032;76033	76029			14	
DRGVAASAGSSGENKK	2	Unmodified	1532.7543	0.75429701	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			5.7581	5.2485	3	2.5208E-05	3303	160511_QHF_FH_JSI10i_3	110.74	96.478			0.63198	0.60927	52.286	2	1	Median	1.0987	0.88181	NaN	1	0	Median	0.36351	0.42096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	354940000	185600000	169330000	230550000	121540000	109010000	124390000	64068000	60319000	0	0	0	0	0	0	9082	1428	8584	56239;56240;56241	76034;76035;76036;76037	76034			4	
DRIDAFLR	0	Unmodified	1004.5403	0.54032847	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		45.01	45.01	3	0.018896	39718	160511_QHF_FH_JSI11i_3	33.263	14.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9083	4749	8585	56242;56243	76038;76039	76038			2	
DRIEITSLLPSR	0	Unmodified	1398.7831	0.78307794	3656	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				73.062	71.585	3	0.0007	58896	160511_QHF_FH_JSI9i_3	50.088	39.762			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9084	3656	8586	56244	76040	76040			1	
DRIGTLEKEHNVFQNK	2	Acetyl (K)	1969.0017	0.0017379196	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		56.936	47.211	3	0.022304	25553	160513_QHF_FH_JSI11Kac_6	54.234	43.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5569600	5569600	0	0	0	0	0	0	0	5569600	5569600	0	0	0	0	9085	3328	8587	56245	76041	76041	2834		1	
DRIIFVTK	1	Unmodified	990.58622	0.58621603	3531	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	41.355	40.301	3	0.0043456	32857	160511_QHF_FH_JSI9i_3	61.65	32.177			0.6179	0.6849	89.63	5	5	Median	1.5273	1.257	128.92	2	2	Median	0.95646	1.1063	67.818	2	2	Median	0.38644	0.36994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	257610000	136140000	121480000	92295000	46806000	45488000	94668000	37382000	57287000	61628000	42926000	18702000	9023900	9023900	0	9086	3531	8588	56246;56247;56248;56249;56250;56251	76042;76043;76044;76045;76046;76047	76045			6	
DRIPQILTK	1	Unmodified	1082.6448	0.64479354	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.046	43.446	3	0.015455	36151	160511_QHF_FH_JSI10i_3	38.783	20.963			1.0298	0.8481	NaN	1	0	Median	1.0298	0.8481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42155000	20279000	21877000	42155000	20279000	21877000	0	0	0	0	0	0	0	0	0	9087	4800	8589	56252;56253	76048;76049	76048			2	
DRIQALLK	1	Unmodified	955.58147	0.581465	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				39.292	37.801	3	0.015412	30884	160511_QHF_FH_JSI9i_3	40.002	23.799			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9088	4936	8590	56254	76050	76050			1	
DRITYFDK	1	Unmodified	1056.524	0.52400971	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			32.34	30.96	3	0.051963	25869	160511_QHF_FH_JSI10i_3	31.425	14.587			1.5285	1.7084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5285	1.7084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20158000	8713400	11445000	0	0	0	20158000	8713400	11445000	0	0	0	0	0	0	9089	4181	8591	56255	76051	76051			1	
DRIVSMTLDK	1	Unmodified	1176.6173	0.61725816	3521;3784	Q8N3U4;Q8WVM7	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	no	no	0	0	0	1		By MS/MS			3	0			1								1			42.663	41.129	3	0.0088293	34267	160511_QHF_FH_JSI10i_3	48.044	31.791			1.2432	1.442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2432	1.442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58188000	23100000	35087000	0	0	0	58188000	23100000	35087000	0	0	0	0	0	0	9090	3521;3784	8592	56256	76052	76052			1	
DRLDPLK	1	Unmodified	855.48142	0.48141661	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.799	23.781	3	0.035497	19673	160511_QHF_FH_JSI12i_3	36.395	19.724			0.67371	0.63932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67371	0.63932	NaN	1	0	Median	32367000	17165000	15202000	0	0	0	0	0	0	0	0	0	32367000	17165000	15202000	9091	5063	8593	56257	76053	76053			1	
DRLEFWCTDVK	1	Unmodified	1467.6816	0.68164933	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			63.806	62.963	3	0.0046626	55724	160511_QHF_FH_JSI10i_2	41.052	36.331			0.80457	0.99031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80457	0.99031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19000000	11471000	7528300	0	0	0	19000000	11471000	7528300	0	0	0	0	0	0	9092	5441	8594	56258	76054	76054			1	
DRLEGLLAFK	1	Unmodified	1160.6554	0.65535823	2472	Q13825	AUH	Methylglutaconyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.213	69.482	3	0.009724	58331	160511_QHF_FH_JSI10i_3	41.283	30.454			0.8073	0.83902	20.32	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61709	0.72672	NaN	1	0	Median	1.0561	0.96866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45497000	25033000	20464000	0	0	0	17149000	9204900	7944100	28348000	15828000	12520000	0	0	0	9093	2472	8595	56259;56260;56261;56262	76055;76056;76057;76058;76059;76060	76058			6	
DRLHLQGQTMQDPFGEK	1	Unmodified	1998.9582	0.95815855	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		53.363	52.189	3	4.6499E-05	43684	160511_QHF_FH_JSI10i_3	79.311	64.616			0.82557	1.0238	18.18	4	1	Linear	1.1782	0.95769	NaN	1	0	Median	0.73202	0.85005	26.254	2	0	Median	0.77326	0.74898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	167070000	82470000	84602000	37240000	16932000	20308000	67414000	35418000	31996000	62419000	30121000	32298000	0	0	0	9094	4775	8596	56263;56264;56265;56266	76061;76062;76063;76064;76065	76063			4	
DRLLASTLVHSVK	1	Unmodified	1437.8304	0.83036248	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			53.158	51.586	3	0.028464	42267	160511_QHF_FH_JSI9i_3	38.028	24.122			1.0993	1.0841	0.89054	2	2	Median	1.2864	1.0772	NaN	1	1	Median	0.93938	1.0909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66914000	35078000	31835000	33761000	15520000	18240000	33153000	19558000	13595000	0	0	0	0	0	0	9095	5124	8597	56267;56268	76066;76067	76067			2	
DRLNSAIIYDRDFSYNYFGFK	1	Unmodified	2603.2445	0.24448739	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	84.065	76.483	3;4	2.6216E-12	43249	160513_QHF_FH_JSI10Kac_6	110.6	102.61			0.7282	0.84055	14.375	5	1	Median	1.0493	0.88996	21.639	2	1	Median	0.71311	0.84824	1.2883	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67862	0.70837	NaN	1	0	Median	858000000	417160000	440840000	293990000	119130000	174850000	529120000	275310000	253800000	0	0	0	34896000	22716000	12180000	9096	1242	8598	56269;56270;56271;56272;56273	76068;76069;76070;76071;76072;76073;76074;76075	76075			8	
DRLPLAVVGSNTIIEVNGK	1	Unmodified	1994.116	0.1160394	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		82.864	82.246	3	2.9794E-06	68899	160511_QHF_FH_JSI10i_3	94.057	66.908			0.82553	0.8675	17.511	3	1	Plateau	1.3035	1.1151	NaN	1	1	Median	0.81947	0.95704	NaN	1	0	Median	0.82553	0.78633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75410000	34588000	40822000	23589000	9912300	13677000	25209000	14278000	10931000	26611000	10397000	16214000	0	0	0	9097	2725	8599	56274;56275;56276	76076;76077	76076			2	
DRLVTLEEFLK	1	Unmodified	1361.7555	0.7554662	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	85.985	85.758	2;3	1.8246E-05	76566	160511_QHF_FH_JSI11i_3	96.64	87.911			0.85085	0.87873	12.609	6	0	Median	1.1306	0.95897	NaN	1	0	Median	0.80428	0.97484	NaN	1	0	Median	0.92489	0.87873	2.7054	2	0	Median	0.7266	0.73957	6.9553	2	0	Median	193490000	83271000	110220000	10329000	3689600	6639500	8076900	4037600	4039400	121400000	49831000	71567000	53687000	25714000	27974000	9098	2100	8600	56277;56278;56279;56280;56281;56282;56283	76078;76079;76080;76081;76082;76083;76084;76085;76086;76087;76088	76080			11	
DRMLEILEGK	1	Unmodified	1202.6329	0.63290823	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	64.99	64.478	3	0.00012847	57026	160511_QHF_FH_JSI11i_3	87.184	69.048			1.148	1.2167	42.008	4	2	Median	1.7851	1.5485	NaN	1	0	Median	0.77983	0.95607	NaN	1	0	Median	1.6901	1.5772	NaN	1	1	Median	0.65981	0.65833	NaN	1	1	Median	132460000	65922000	66537000	13765000	5426800	8338200	33331000	20646000	12685000	31385000	12058000	19328000	53977000	27791000	26186000	9099	2084	8601	56284;56285;56286;56287;56288;56289	76089;76090;76091;76092;76093;76094;76095	76090			7	
DRMVNSNLASVEELK	1	Unmodified	1703.8512	0.85123386	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.6	0.49		2	3								2	3		56.023	55.431	2;3	0.00013337	49171	160511_QHF_FH_JSI11i_3	62.055	51.201			0.87851	1.0021	40.843	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0102	1.1811	23.249	2	1	Median	1.15	1.0863	42.542	3	0	Plateau	NaN	NaN	NaN	0	0	Median	307630000	167340000	140290000	0	0	0	92071000	43888000	48183000	215560000	123450000	92108000	0	0	0	9100	903	8602	56290;56291;56292;56293;56294	76096;76097;76098;76099	76097			4	
DRNDFWEGIK	1	Unmodified	1278.5993	0.59929991	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	53.052	52.935	2	0.002339	46779	160511_QHF_FH_JSI11i_3	77.533	61.2			1.2185	1.1721	8.2142	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2084	1.106	NaN	1	0	Median	1.2288	1.2422	NaN	1	0	Median	111890000	46646000	65243000	0	0	0	0	0	0	70074000	30895000	39178000	41816000	15751000	26065000	9101	2902	8603	56295;56296	76100	76100			1	
DRNIITEGNGTESLNSVITSMK	1	Unmodified	2378.1748	0.17475284	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.851	78.851	3	0.01147	70432	160511_QHF_FH_JSI11i_3	33.794	25.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9102	4253	8604	56297	76101	76101			1	
DRPASGSPFQLFLSK	1	Unmodified	1648.8573	0.85730551	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			83.599	82.354	3	0.0039798	69020	160511_QHF_FH_JSI10i_3	40.857	29.913			0.8948	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8948	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12180000	6617200	5562600	0	0	0	12180000	6617200	5562600	0	0	0	0	0	0	9103	4259	8605	56298	76102	76102			1	
DRPFFAGLVK	1	Unmodified	1148.6342	0.63422886	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	3.58		4	8						1	3	5	3	2	65.913	64.454	2;3	1.7975E-06	52697	160511_QHF_FH_JSI9i_3	117.89	87.723			0.91625	0.91144	20.432	11	2	Median	0.90819	0.71901	15.09	3	0	Plateau	0.79302	0.93109	29.376	4	1	Median	1.0237	0.95086	5.2425	3	1	Plateau	0.83122	0.83346	NaN	1	0	Median	4277600000	2169900000	2107800000	1075100000	494560000	580550000	1516300000	839250000	677070000	1580500000	772200000	808340000	105660000	63856000	41800000	9104	1079	8606	56299;56300;56301;56302;56303;56304;56305;56306;56307;56308;56309;56310;56311	76103;76104;76105;76106;76107;76108;76109;76110;76111;76112;76113;76114;76115;76116;76117;76118;76119;76120;76121;76122;76123;76124;76125;76126;76127;76128;76129;76130;76131;76132;76133;76134	76121			32	
DRPFFPGLVK	1	Unmodified	1174.6499	0.64987892	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.08		4	10						3	5	4	4	4	65.06	62.536	2;3	0.00092668	55486	160511_QHF_FH_JSI11i_3	61.353	52.84			0.81005	0.81737	8.3035	15	0	Median	1.0038	0.81963	6.9037	4	0	Median	0.79833	0.90803	3.1566	3	0	Plateau	0.86002	0.82658	9.2789	4	0	Median	0.74304	0.7723	5.6725	4	0	Median	9550400000	4766100000	4784300000	2772600000	1331000000	1441700000	2428400000	1371600000	1056800000	3981800000	1854700000	2127200000	367560000	208870000	158690000	9105	1209	8607	56312;56313;56314;56315;56316;56317;56318;56319;56320;56321;56322;56323;56324;56325;56326;56327;56328	76135;76136;76137;76138;76139;76140;76141;76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153;76154;76155;76156;76157;76158;76159;76160;76161;76162;76163;76164;76165;76166;76167;76168;76169;76170;76171	76137			37	
DRPMEESLLLFEAMR	0	Unmodified	1835.891	0.89099018	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	98.205	98.153	3	0.00015808	87329	160511_QHF_FH_JSI11i_3	71.344	65.181			1.1126	1.158	30.731	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3484	1.2894	42.566	2	1	Median	1.1126	1.158	NaN	1	0	Median	81340000	34927000	46413000	0	0	0	0	0	0	41049000	18660000	22389000	40291000	16267000	24024000	9106	1609	8608	56329;56330;56331;56332;56333;56334	76172;76173;76174;76175;76176;76177	76172			5	
DRPQEADGIDSVIVVDNVPQVGPDR	0	Unmodified	2689.3307	0.33073621	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	78.893	78.552	3	1.093E-08	71493	160511_QHF_FH_JSI12i_1	86.551	79.018			0.87022	1.0946	4.6826	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.87022	1.0107	NaN	1	0	Median	1.1412	1.0946	NaN	1	1	Median	1.0762	1.0975	NaN	1	1	Median	100210000	51429000	48776000	0	0	0	35891000	22051000	13840000	31660000	14285000	17374000	32655000	15093000	17562000	9107	1867	8609	56335;56336;56337	76178;76179;76180;76181	76180			3	
DRPQEADGIDSVIVVDNVPQVGPDRLEK	1	Unmodified	3059.5524	0.55235631	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		79.7	79.174	3;4	1.1348E-12	69998	160511_QHF_FH_JSI9i_2	81.534	79.04			1.0484	0.96361	11.937	4	2	Median	1.1334	0.99905	12.763	2	2	Median	0.69546	0.8336	NaN	1	0	Median	1.0663	1.0172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121470000	58806000	62664000	65673000	26659000	39013000	26122000	15660000	10462000	29676000	16487000	13189000	0	0	0	9108	1867	8610	56338;56339;56340;56341	76182;76183;76184;76185;76186;76187;76188	76185			7	
DRPSAAHIVEALETDV	0	Unmodified	1721.8584	0.85842773	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							3	1			84.066	83.244	3	0.001973	69534	160511_QHF_FH_JSI10i_3	43.408	32.137			1.3598	1.1924	23.488	3	2	Plateau	1.3598	1.1924	23.488	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55404000	21303000	34101000	55404000	21303000	34101000	0	0	0	0	0	0	0	0	0	9109	4154	8611	56342;56343;56344;56345	76189;76190;76191;76192;76193	76189			5	
DRPVSQPSLVGSK	1	Unmodified	1368.7361	0.73612775	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		9	6			1					1		1		1		30.84	25.282	3	0.015083	20640	160511_QHF_FH_JSI9i_3	45.207	36.157			0.79857	0.69863	95.143	2	2	Median	1.6588	1.3691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38444	0.35651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34256000	8152400	26104000	32975000	7037000	25938000	0	0	0	1281800	1115400	166430	0	0	0	9110	4714	8612	56346;56347	76194;76195	76194			2	
DRQYLLFFHK	1	Unmodified	1365.7194	0.71935547	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	70.437	61.796	3	0.0008619	33642	160513_QHF_FH_JSI10Kac_6	67.153	57.965			0.76148	0.91238	44.623	3	0	Plateau	0.43486	0.37382	NaN	1	0	Median	0.76148	0.91238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54732	0.57513	NaN	1	0	Median	202330000	121140000	81188000	23251000	18093000	5157800	140960000	77628000	63327000	0	0	0	38124000	25421000	12703000	9111	3635	8613	56348;56349;56350	76196;76197;76198;76199	76199			3	
DRSEEERTTEAEK	1	Unmodified	1578.7122	0.71215742	1270	P26038	MSN	Moesin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	5.8184	5.4937	3	0.00012586	3535	160511_QHF_FH_JSI10i_2	76.759	61.372			0.93712	1.0205	15.215	5	0	Median	1.3509	1.1745	NaN	1	0	Median	0.74018	0.91517	NaN	1	0	Median	0.94539	0.91552	21.047	2	0	Median	0.93712	1.0205	NaN	1	0	Median	815640000	387850000	427800000	273320000	125240000	148080000	282830000	147230000	135600000	220150000	97857000	122290000	39338000	17515000	21824000	9112	1270	8614	56351;56352;56353;56354;56355	76200;76201;76202;76203	76202			3	
DRSGVISDTELQQALSNGTWTPFNPVTVR	0	Unmodified	3187.5898	0.58980444	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			101.3	101.15	3	7.5894E-71	83785	160511_QHF_FH_JSI10i_3	211.89	202.01			1.0453	1.1887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0453	1.1887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	388120000	174910000	213210000	0	0	0	388120000	174910000	213210000	0	0	0	0	0	0	9113	503	8615	56356	76204	76204			1	
DRSSFYVNGLTLGGQK	1	Unmodified	1740.8795	0.87949752	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.38	2	7	11					1	4	8	7	6	4	64.313	61.711	2;3	1.4192E-07	50828	160511_QHF_FH_JSI9i_3	134.88	123.44			0.9748	0.99338	17.947	24	2	Median	1.0828	0.87522	15.841	7	0	Median	0.84095	1.0241	23.159	7	0	Median	0.99217	0.96719	8.6503	6	1	Median	1.2119	1.1046	13.268	4	1	Linear	6411000000	3066400000	3344600000	1926000000	847830000	1078200000	2291900000	1151800000	1140100000	1765200000	868460000	896720000	427880000	198230000	229660000	9114	876	8616	56357;56358;56359;56360;56361;56362;56363;56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375;56376;56377;56378;56379;56380;56381	76205;76206;76207;76208;76209;76210;76211;76212;76213;76214;76215;76216;76217;76218;76219;76220;76221;76222;76223;76224;76225;76226;76227;76228;76229;76230;76231;76232;76233;76234;76235;76236;76237;76238;76239;76240;76241;76242;76243;76244;76245;76246;76247;76248;76249;76250;76251	76227			46	
DRSTLGEK	1	Unmodified	904.46141	0.46140945	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.6821	5.6821	3	0.027578	3439	160511_QHF_FH_JSI11i_3	39.305	27.936			2.6521	2.4979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6521	2.4979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	198570000	71070000	127510000	0	0	0	0	0	0	198570000	71070000	127510000	0	0	0	9115	5500	8617	56382	76252	76252			1	
DRTLTPLGR	0	Unmodified	1027.5774	0.57744226	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			25.985	24.669	2;3	0.0040761	19987	160511_QHF_FH_JSI9i_3	77.732	54.209			1.1446	0.86266	17.253	4	1	Linear	1.1079	0.88104	16.43	2	0	Median	0.69729	0.80482	23.262	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162780000	77507000	85275000	103330000	42944000	60387000	59451000	34564000	24887000	0	0	0	0	0	0	9116	4114	8618	56383;56384;56385;56386	76253;76254;76255;76256	76256			4	
DRVALSNMNVIDR	0	Unmodified	1501.7671	0.7671103	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			52.297	50.898	3	2.6478E-05	41714	160511_QHF_FH_JSI9i_3	110.92	102.1			0.44412	0.44232	30.22	3	2	Plateau	0.75018	0.63912	27.262	2	2	Median	0.37551	0.42709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138180000	75196000	62980000	102160000	49259000	52905000	36011000	25937000	10075000	0	0	0	0	0	0	9117	1862	8619	56387;56388;56389	76257;76258;76259	76258			3	
DRVAQKK	2	Acetyl (K)	885.50321	0.50321468	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14.5	0.5							2	2			2		2	6.012	-3.0574	3	0.019195	1846	160513_QHF_FH_JSI10Kac_5	73.616	39.613			0.86747	0.97639	28.041	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1014	1.2996	24.984	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7866	0.85774	2.8657	2	0	Median	37257000	18703000	18555000	0	0	0	12033000	4844800	7188000	0	0	0	25224000	13858000	11366000	9118	1590	8620	56390;56391;56392;56393	76260;76261;76262	76262	1602		3	
DRVEISPEQLSAASTEAER	0	Unmodified	2087.0131	0.013090467	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		55.92	55.514	3	0.0020322	50293	160511_QHF_FH_JSI11i_1	49.592	39.535			1.9612	2.0581	3.5074	2	2	Median	NaN	NaN	NaN	0	0	Median	1.8004	2.1098	NaN	1	1	Median	2.1363	2.0077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96834000	40098000	56737000	0	0	0	47340000	19205000	28136000	49494000	20893000	28601000	0	0	0	9119	1588	8621	56394;56395	76263;76264	76263			2	
DRVIDEAK	1	Unmodified	944.49271	0.49270958	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	7.9859	7.6257	3	0.040538	5568	160511_QHF_FH_JSI12i_1	34.253	12.122			1.0073	1.0458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0073	1.0458	NaN	1	1	Median	79662000	7800400	71862000	0	0	0	0	0	0	0	0	0	79662000	7800400	71862000	9120	2574	8622	56396	76265	76265			1	
DRVTDALNATR	0	Unmodified	1230.6317	0.63166267	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.62	5	8	8				3	5		5	10	8	6	34.771	31.539	2;3	4.7199E-07	26200	160511_QHF_FH_JSI10i_3	125.75	89.352			0.97441	0.74144	16.704	29	1	Linear	1.0323	0.85772	17.056	5	0	Median	0.90875	1.0449	18.471	10	1	Median	0.99471	0.96455	16.531	8	0	Median	0.93905	0.98837	15.36	6	0	Median	12519000000	6530400000	5988500000	2725700000	1263200000	1462500000	5303200000	2989800000	2313400000	3318400000	1655600000	1662800000	1171500000	621770000	549750000	9121	980	8623	56397;56398;56399;56400;56401;56402;56403;56404;56405;56406;56407;56408;56409;56410;56411;56412;56413;56414;56415;56416;56417;56418;56419;56420;56421;56422;56423;56424;56425	76266;76267;76268;76269;76270;76271;76272;76273;76274;76275;76276;76277;76278;76279;76280;76281;76282;76283;76284;76285;76286;76287;76288;76289;76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302;76303;76304;76305	76274			39	
DRVTSAVEALLSADSASR	0	Unmodified	1846.9385	0.93846896	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							3	1			89.966	89.213	3	0.0013868	78467	160511_QHF_FH_JSI9i_2	40.432	29.152			1.4566	1.2304	33.099	4	2	Median	1.6345	1.3715	13.292	3	2	Median	0.61929	0.68811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54000000	25564000	28437000	33183000	12695000	20489000	20817000	12869000	7948000	0	0	0	0	0	0	9122	1573	8624	56426;56427;56428;56429	76306;76307;76308;76309	76308			3	
DRYGGQPLFSEK	1	Unmodified	1395.6783	0.67827852	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		36.992	36.254	2	0.0020964	31699	160511_QHF_FH_JSI11i_3	73.781	53.478			1.0162	1.0461	7.4043	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9605	1.1024	NaN	1	0	Median	1.0752	0.99278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72453000	37738000	34715000	0	0	0	28547000	15370000	13177000	43906000	22368000	21538000	0	0	0	9123	2785	8625	56430;56431	76310;76311	76311			2	
DSAAAVVVYDITNVNSFQQTTK	1	Unmodified	2370.1703	0.17031939	2861	Q53S08;Q9H0N0	RAB6C	Ras-related protein Rab-6C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	99.372	99.213	3	7.4689E-23	89964	160511_QHF_FH_JSI12i_1	159.75	151.65			0.69097	0.62386	52.11	6	4	Median	0.99017	0.79958	42.74	2	2	Median	0.55689	0.62619	NaN	1	1	Median	1.2214	1.1611	88.539	2	1	Median	0.60826	0.62155	NaN	1	0	Median	140920000	77355000	63566000	31774000	14754000	17020000	33474000	18386000	15088000	44123000	23186000	20937000	31551000	21030000	10521000	9124	2861	8626	56432;56433;56434;56435;56436;56437;56438	76312;76313;76314;76315;76316;76317;76318	76314			7	
DSAAFEDNEVQDEFLEK	1	Unmodified	1984.8538	0.85379586	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	73.525	73.101	2	4.0064E-37	66499	160511_QHF_FH_JSI11i_1	235.73	214.89			0.769	0.8269	25.854	6	6	Median	0.74595	0.60997	NaN	1	1	Median	0.6612	0.7874	21.782	2	2	Median	1.0026	0.9625	36.335	2	2	Median	0.85574	0.91946	NaN	1	1	Median	305060000	170150000	134910000	34222000	20833000	13389000	108490000	61901000	46592000	122510000	66703000	55805000	39835000	20713000	19122000	9125	5330	8627	56439;56440;56441;56442;56443;56444	76319;76320;76321;76322;76323;76324;76325;76326	76322			8	
DSAGEPLYK	1	Unmodified	978.46583	0.46582612	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.775	21.645	2	0.021164	18696	160511_QHF_FH_JSI11i_1	49.96	25.142			1.9076	1.8534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9076	1.8534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125290000	39856000	85431000	0	0	0	0	0	0	125290000	39856000	85431000	0	0	0	9126	236	8628	56445	76327	76327			1	
DSAIPVESDTDDEGAPR	0	Unmodified	1772.7701	0.77006623	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	39.784	39.25	2	1.2164E-10	35448	160511_QHF_FH_JSI11i_1	141.38	135.41			1.0618	1.077	14.153	6	5	Median	1.2723	1.0425	NaN	1	0	Median	0.90996	1.0596	11.541	2	2	Median	1.2475	1.2204	13.082	2	2	Median	0.83922	0.88881	NaN	1	1	Median	744040000	355810000	388230000	92463000	44359000	48104000	303630000	149200000	154430000	242880000	107950000	134930000	105070000	54295000	50771000	9127	4021	8629	56446;56447;56448;56449;56450;56451	76328;76329;76330;76331;76332;76333;76334	76329			7	
DSAIQQQVANLQMK	1	Unmodified	1572.793	0.7929907	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.096	60.455	2;3	3.6175E-15	54970	160511_QHF_FH_JSI12i_1	199.68	186.72			1.0361	1.0175	13.883	8	1	Median	1.2585	1.0316	2.0373	2	0	Median	0.8184	0.95484	9.0668	2	0	Median	1.0804	1.0563	31.926	2	1	Median	1.0361	1.0741	9.0032	2	0	Median	1024700000	546050000	478640000	249790000	128970000	120820000	240870000	132500000	108370000	276050000	159010000	117040000	257990000	125580000	132410000	9128	2517	8630	56452;56453;56454;56455;56456;56457;56458;56459	76335;76336;76337;76338;76339;76340;76341;76342;76343;76344;76345;76346	76339			12	
DSALETLQGQLEEK	1	Unmodified	1559.7679	0.76788138	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	70.251	69.552	2;3	7.5553E-08	63264	160511_QHF_FH_JSI12i_1	185.25	160.4			0.91473	0.90045	19.336	5	4	Median	1.0392	0.85194	30.063	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91473	0.90045	NaN	1	1	Median	0.93524	0.94811	21.847	2	1	Median	366220000	191740000	174480000	168480000	84153000	84328000	0	0	0	94513000	47215000	47298000	103220000	60375000	42849000	9129	2587	8631	56460;56461;56462;56463;56464	76347;76348;76349;76350;76351	76349			5	
DSALFVK	1	Unmodified	778.4225	0.42250475	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	38.572	38.038	2	0.0071824	34044	160511_QHF_FH_JSI11i_1	89.673	43.303			0.16097	0.13586	202.87	7	7	Median	0.16097	0.12987	NaN	1	1	Median	0.70498	0.82831	273.88	2	2	Median	0.71171	0.68152	314.33	2	2	Median	0.61052	0.63574	218.23	2	2	Median	243080000	142090000	100990000	20393000	17259000	3134200	74394000	42184000	32210000	83241000	42339000	40902000	65056000	40313000	24743000	9130	4701	8632	56465;56466;56467;56468;56469;56470;56471	76352;76353;76354;76355;76356;76357;76358	76352			7	
DSALVEESNGTLEEK	1	Unmodified	1619.7526	0.75262525	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		44.199	42.981	2	9.1131E-12	38607	160511_QHF_FH_JSI10i_1	110.98	90.847			0.35975	0.28909	NaN	1	1	Median	0.35975	0.28909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24677000	18137000	6540200	24677000	18137000	6540200	0	0	0	0	0	0	0	0	0	9131	5340	8633	56472;56473;56474;56475	76359;76360;76361;76362;76363	76361			5	
DSAMLVLR	0	Unmodified	903.48479	0.48478743	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.312	51.646	2	0.050534	46828	160511_QHF_FH_JSI12i_1	37.159	22.746			1.0038	1.0513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0038	1.0513	NaN	1	0	Median	30410000	16033000	14377000	0	0	0	0	0	0	0	0	0	30410000	16033000	14377000	9132	2925	8634	56476	76364	76364			1	
DSAPYGEYGSWYK	1	Unmodified	1521.6412	0.64122431	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			59.77	59.021	2	0.00080679	52336	160511_QHF_FH_JSI9i_1	79.201	64.511			1.1177	1.0593	29.118	2	2	Median	1.6186	1.3015	NaN	1	1	Median	0.77187	0.86221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38507000	19033000	19474000	19971000	8549800	11421000	18536000	10483000	8052900	0	0	0	0	0	0	9133	4625	8635	56477;56478	76365;76366;76367	76366			3	
DSAQNSVIIVDK	1	Unmodified	1287.667	0.66704513	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	5.26	4		5	4	3	1	1		1	4	8	4	3	47.432	40.712	2	4.5113E-42	37102	160511_QHF_FH_JSI12i_1	240.8	215.18			0.84998	0.91845	30.003	12	5	Median	0.83318	0.67265	NaN	1	0	Median	0.82098	0.98468	34.826	5	3	Median	0.9162	0.87834	23.311	3	1	Median	0.86711	0.92202	35.319	3	1	Median	4217300000	2062700000	2154600000	906610000	423840000	482770000	1085500000	583340000	502190000	1018400000	490250000	528180000	1206700000	565300000	641440000	9134	793	8636	56479;56480;56481;56482;56483;56484;56485;56486;56487;56488;56489;56490;56491;56492;56493;56494;56495;56496;56497	76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378;76379;76380;76381;76382;76383;76384;76385;76386;76387;76388;76389;76390;76391;76392;76393	76375			26	
DSAQTSVTQAQR	0	Unmodified	1290.6164	0.61640654	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	5.47	4				5					1	3	2	3	12.643	8.4347	2	1.467E-78	7922	160511_QHF_FH_JSI9i_1	250.75	198.49			0.93447	1.0118	20.631	9	4	Median	0.91926	0.74237	NaN	1	0	Median	0.88959	1.012	30.458	3	2	Median	1.0583	1.0145	0.37673	2	0	Median	0.94506	1.0097	20.904	3	2	Median	681000000	353740000	327260000	179950000	96403000	83550000	168510000	93890000	74622000	162700000	73117000	89588000	169830000	90333000	79499000	9135	2587	8637	56498;56499;56500;56501;56502;56503;56504;56505;56506	76394;76395;76396;76397;76398;76399;76400;76401;76402;76403;76404;76405;76406	76403			13	
DSASFNPELLTHILDGSPEK	1	Unmodified	2169.059	0.058978027	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	101.05	100.91	3	4.1308E-10	91535	160511_QHF_FH_JSI12i_1	118.37	85.241			0.89045	0.92666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89045	0.92666	NaN	1	1	Median	89920000	44813000	45108000	0	0	0	0	0	0	0	0	0	89920000	44813000	45108000	9136	2624	8638	56507	76407	76407			1	
DSASLFVVAR	0	Unmodified	1063.5662	0.56620887	5547	Q9Y2Y9	KLF13	Krueppel-like factor 13	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			69.875	59.234	2	7.2833E-05	31796	160513_QHF_FH_JSI10Kac_4	101.72	60.494			0.78927	0.90627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78927	0.90627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2423700	1529800	893910	0	0	0	2423700	1529800	893910	0	0	0	0	0	0	9137	5547	8639	56508	76408	76408			1	
DSATGLSK	1	Unmodified	777.38685	0.38684752	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.65	7	1			4	3				2	5	4	4	9.0648	5.4772	1;2	0.004134	5609	160511_QHF_FH_JSI9i_1	69.628	32.469			0.74407	0.86617	48.498	15	5	Median	1.1473	0.94424	1.4558	2	0	Median	0.74055	0.86617	63.788	5	3	Median	0.71376	0.69667	59.356	4	1	Median	0.80243	0.84905	34.778	4	1	Median	4103300000	2190300000	1913000000	864610000	318310000	546290000	1100000000	632200000	467800000	1071000000	614180000	456850000	1067700000	625610000	442080000	9138	1274	8640	56509;56510;56511;56512;56513;56514;56515;56516;56517;56518;56519;56520;56521;56522;56523	76409;76410;76411;76412;76413;76414;76415;76416;76417;76418;76419	76416			10	
DSAVAISGADSR	0	Unmodified	1147.5469	0.54692999	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.78	4.71	2				5	2					3	3	3	27	21.144	2	1.3865E-06	12660	160513_QHF_FH_JSI11Kac_3	117.02	86.947			1.2418	1.1973	43.587	7	5	Median	NaN	NaN	NaN	0	0	Median	0.70808	0.83857	NaN	1	1	Median	1.5722	1.5534	35.008	3	2	Median	1.1347	1.1973	51.873	3	2	Median	415410000	203940000	211470000	0	0	0	192180000	107810000	84369000	15287000	6710400	8576900	207940000	89414000	118520000	9139	3290	8641	56524;56525;56526;56527;56528;56529;56530;56531;56532	76420;76421;76422;76423;76424;76425;76426;76427;76428	76423			9	
DSAVLDQSAK	1	Unmodified	1032.5088	0.50875357	4514	Q9BXF6	RAB11FIP5	Rab11 family-interacting protein 5	yes	yes	0	0	0	0				By MS/MS	12	0					1								1	26.139	18.955	2	0.025907	9416	160513_QHF_FH_JSI12Kac_2	56.258	36.472			0.055586	0.060583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.055586	0.060583	NaN	1	1	Median	780680	718440	62242	0	0	0	0	0	0	0	0	0	780680	718440	62242	9140	4514	8642	56533	76429	76429			1	
DSAYPEELSR	0	Unmodified	1165.5251	0.52513192	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	34.214	30.865	2	9.9695E-10	27854	160511_QHF_FH_JSI11i_1	136.57	115.27			1.1132	1.1195	8.283	6	0	Median	1.4113	1.1405	NaN	1	0	Median	0.83557	0.98136	NaN	1	0	Median	1.2093	1.1651	8.2886	2	0	Median	1.0186	1.0908	8.0033	2	0	Median	1078600000	556600000	522000000	180230000	82266000	97968000	355110000	192050000	163060000	273710000	138710000	135000000	269550000	143570000	125980000	9141	874	8643	56534;56535;56536;56537;56538;56539	76430;76431;76432;76433;76434;76435;76436;76437;76438;76439;76440	76431			11	
DSAYQSITHYRPVSASR	0	Unmodified	1936.9391	0.93913766	1703	P50402	EMD	Emerin	yes	yes	0	0	0	1	By MS/MS				7.33	6.13			2						1	3				45.671	41.538	3;4	1.3962E-05	34125	160511_QHF_FH_JSI9i_3	89.484	83.362			1.4107	1.1436	6.1703	3	1	Plateau	1.4107	1.1436	6.1703	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157750000	67251000	90499000	157750000	67251000	90499000	0	0	0	0	0	0	0	0	0	9142	1703	8644	56540;56541;56542	76441;76442;76443;76444	76441			4	
DSCPLDCK	1	Unmodified	993.38957	0.38956641	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			16.154	15.906	2	0.0033742	13434	160511_QHF_FH_JSI10i_1	78.77	55.989			1.1746	1.3726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1746	1.3726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147830000	42195000	105630000	0	0	0	147830000	42195000	105630000	0	0	0	0	0	0	9143	2131	8645	56543	76445	76445			1	
DSCTAQLNIK	1	Unmodified	1148.5496	0.54957253	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.903	11.944	3	0.043416	9918	160511_QHF_FH_JSI12i_3	16.632	0			1.0883	1.0483	10.264	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0342	0.97492	NaN	1	0	Median	1.1452	1.1272	NaN	1	0	Median	431730000	209540000	222190000	0	0	0	0	0	0	84923000	42678000	42246000	346800000	166860000	179940000	9144	3821	8646	56544;56545	76446;76447	76447			2	
DSDAGSSTPTTSTR	0	Unmodified	1381.5957	0.59573068	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	9.4533	6.1426	2	7.7268E-40	6288	160511_QHF_FH_JSI12i_1	198.81	140.14			1.0721	1.0239	50.017	7	2	Median	1.2529	1.0239	NaN	1	0	Median	0.71896	0.81702	21.518	2	0	Median	1.4321	1.4016	71.404	2	1	Median	1.558	1.6937	58.241	2	1	Median	395080000	216940000	178140000	90907000	42469000	48438000	109810000	65865000	43944000	99010000	58832000	40178000	95357000	49773000	45584000	9145	1737	8647	56546;56547;56548;56549;56550;56551;56552	76448;76449;76450;76451;76452;76453;76454	76450			7	
DSDDVPMVLVGNK	1	Unmodified	1387.6653	0.66533057	785	P01111	NRAS	GTPase NRas	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	66.45	65.778	2	5.6055E-10	59630	160511_QHF_FH_JSI11i_1	113.93	97.788			0.93585	0.93096	6.7433	2	1	Median	1.1667	0.97643	NaN	1	1	Median	0.75065	0.88761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101120000	55577000	45541000	27396000	14298000	13098000	73722000	41279000	32443000	0	0	0	0	0	0	9146	785	8648	56553;56554;56555;56556;56557	76455;76456;76457;76458;76459;76460	76455			6	
DSDEADLVLAK	1	Unmodified	1174.5717	0.57174776	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.49	5				2	1				1	2	3	2	52.703	49.117	2	2.9699E-13	44423	160511_QHF_FH_JSI11i_1	150.35	127.61			0.75089	0.81966	24.123	6	1	Median	0.66342	0.5555	NaN	1	0	Median	0.6207	0.71272	5.3664	2	0	Median	1.0122	0.99443	12.929	2	0	Median	0.84991	0.91185	NaN	1	1	Median	1481900000	750220000	731700000	347180000	179490000	167700000	321480000	186030000	135450000	409510000	189600000	219910000	403740000	195100000	208640000	9147	2367	8649	56558;56559;56560;56561;56562;56563;56564;56565	76461;76462;76463;76464;76465;76466;76467;76468;76469;76470;76471;76472	76462			12	
DSDENLTDAEGK	1	Unmodified	1292.5368	0.53681882	3030	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.237	18.757	2	0.0064557	16278	160511_QHF_FH_JSI12i_1	52.6	41.448			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9148	3030	8650	56566	76473	76473			1	
DSDIEQLR	0	Unmodified	974.46689	0.46688876	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.426	27.158	2	0.011304	23607	160511_QHF_FH_JSI9i_1	53.968	31.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9149	475	8651	56567	76474	76474			1	
DSDLSHVQNK	1	Unmodified	1141.5364	0.53636531	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.65	3.98	12	3				1	1			4	4	5	4	11.329	10.449	2;3	3.4544E-09	8020	160511_QHF_FH_JSI9i_1	186.91	168.64			1.2172	1.3089	59.921	15	10	Median	0.92153	0.75055	90.361	3	3	Median	1.0095	1.2363	71.074	3	2	Median	1.4831	1.438	53.757	5	3	Median	1.1869	1.2755	55.085	4	2	Median	3994600000	1914000000	2080500000	857730000	411400000	446330000	795430000	441490000	353940000	1184000000	522900000	661110000	1157400000	538230000	619150000	9150	423	8652	56568;56569;56570;56571;56572;56573;56574;56575;56576;56577;56578;56579;56580;56581;56582;56583;56584	76475;76476;76477;76478;76479;76480;76481;76482;76483;76484;76485;76486;76487;76488;76489;76490	76487			16	
DSDPVMAGIGEEIAHFQK	1	Unmodified	1942.9095	0.90947702	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.017	91.53	3	0.0041629	80550	160511_QHF_FH_JSI11i_2	47.204	38.158			0.41351	0.4102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41351	0.4102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54283000	38012000	16271000	0	0	0	0	0	0	54283000	38012000	16271000	0	0	0	9151	1443	8653	56585	76491	76491			1	
DSDQVAQSDGEESPAAEEQLLGEHIK	1	Unmodified	2781.2577	0.25769043	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.366	63.74	3	7.1965E-14	58102	160511_QHF_FH_JSI12i_1	85.537	82.046			0.97521	0.98058	4.8799	4	1	Median	1.2749	1.0773	NaN	1	1	Median	0.82898	0.98341	NaN	1	0	Median	1.0048	0.97165	NaN	1	0	Median	0.94652	0.97776	NaN	1	0	Median	228320000	111040000	117280000	30177000	10518000	19659000	63224000	40423000	22802000	61297000	22483000	38814000	73622000	37619000	36003000	9152	636	8654	56586;56587;56588;56589	76492;76493;76494;76495;76496;76497;76498;76499	76497			8	
DSDSMETEEK	1	Unmodified	1169.4394	0.43941296	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.3769	9.1413	2	8.6371E-07	6937	160511_QHF_FH_JSI10i_1	123.86	118.38			2.3433	2.7589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3433	2.7589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58462000	21204000	37258000	0	0	0	58462000	21204000	37258000	0	0	0	0	0	0	9153	4272	8655	56590	76500	76500			1	
DSDVEVYNIIK	1	Unmodified	1293.6452	0.64524705	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	71.246	68.063	2	4.9567E-14	61982	160511_QHF_FH_JSI12i_1	154.56	124.3			0.87833	0.94188	17.978	6	1	Median	0.86048	0.70765	NaN	1	1	Median	0.72957	0.85839	11.977	2	0	Median	1.1253	1.1114	NaN	1	0	Median	0.98219	1.0222	10.423	2	0	Median	331970000	159060000	172920000	53251000	22618000	30632000	96289000	54101000	42188000	92643000	38715000	53928000	89791000	43624000	46167000	9154	1414	8656	56591;56592;56593;56594;56595;56596	76501;76502;76503;76504;76505;76506	76502			6	
DSDVEVYNIIKK	2	Unmodified	1421.7402	0.74021007	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	60.045	58.723	2	0.01413	50370	160511_QHF_FH_JSI12i_2	50.123	40.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9155	1414	8657	56597	76507	76507			1	
DSDYYNMLLK	1	Unmodified	1260.5696	0.56963927	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	72.52	72.04	2	9.6179E-10	65210	160511_QHF_FH_JSI10i_1	136.75	120.55			0.79745	0.82044	27.795	5	3	Median	0.98239	0.80317	NaN	1	0	Median	0.79745	0.9422	NaN	1	0	Median	1.0552	1.0351	49.912	2	2	Median	0.78312	0.82044	NaN	1	1	Median	834450000	412360000	422100000	127960000	60778000	67178000	173050000	98453000	74594000	371610000	160560000	211050000	161840000	92569000	69271000	9156	2046	8658	56598;56599;56600;56601;56602	76508;76509;76510;76511;76512;76513;76514;76515;76516;76517	76512			10	
DSEADRFSDSHNALR	0	Unmodified	1718.7608	0.76083895	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	24.526	24.04	3	0.00035688	20132	160511_QHF_FH_JSI11i_2	46.319	38.142			0.85311	0.92084	13.822	4	1	Median	1.3003	1.0929	NaN	1	0	Median	0.76036	0.94015	NaN	1	1	Median	0.95717	0.90193	NaN	1	0	Median	0.7534	0.78104	NaN	1	0	Median	128820000	61686000	67131000	23049000	9702100	13347000	28511000	15946000	12565000	37642000	16847000	20795000	39614000	19190000	20425000	9157	3734	8659	56603;56604;56605;56606;56607;56608;56609	76518;76519;76520;76521;76522;76523;76524	76521			7	
DSEAELQR	0	Unmodified	946.43559	0.43558863	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.76	6				1	3				1	2	3	4	12.474	9.3529	2	6.1837E-05	8660	160511_QHF_FH_JSI12i_1	144.35	111.42			0.91523	0.94754	15.821	10	5	Median	1.1471	0.93235	NaN	1	0	Median	0.75653	0.87452	11.181	2	1	Median	0.97486	0.97912	23.462	3	2	Median	0.78448	0.83804	16.74	4	2	Linear	1540400000	834190000	706180000	225590000	116650000	108940000	305430000	161960000	143460000	480670000	257630000	223040000	528690000	297950000	230730000	9158	2725	8660	56610;56611;56612;56613;56614;56615;56616;56617;56618;56619	76525;76526;76527;76528;76529;76530;76531;76532;76533;76534;76535;76536	76528			12	
DSEAELQRR	0	Unmodified	1102.5367	0.53669966	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		9.09	8.6936	2	0.001328	6360	160511_QHF_FH_JSI11i_2	69.628	33.232			0.98941	1.005	9.5252	3	0	Median	1.361	1.18	NaN	1	0	Median	0.8104	0.99636	NaN	1	0	Median	0.98941	1.005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121750000	59290000	62461000	30193000	12509000	17684000	34285000	18472000	15813000	57273000	28309000	28964000	0	0	0	9159	2725	8661	56620;56621;56622	76537;76538;76539;76540	76537			4	
DSEAQEAALSR	0	Unmodified	1175.5418	0.54184461	2103	P82094	TMF1	TATA element modulatory factor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.13	17.66	2	0.0021805	15240	160511_QHF_FH_JSI12i_1	62.78	26.274			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9160	2103	8662	56623	76541	76541			1	
DSEAQRLPDSFK	1	Unmodified	1391.6681	0.66810776	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		1	0	3									1	1	1		36.904	36.287	3	0.026607	32444	160511_QHF_FH_JSI11i_1	30.176	22.42			0.90665	1.0729	10.251	3	0	Plateau	1.0779	0.87496	NaN	1	0	Median	0.89449	1.0729	NaN	1	0	Median	1.0243	0.98684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243910000	146810000	97095000	42795000	23820000	18976000	127700000	82880000	44822000	73410000	40113000	33297000	0	0	0	9161	1286	8663	56624;56625;56626	76542	76542			1	
DSEDIYNLK	1	Unmodified	1095.5084	0.50841922	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.79	6				2	3				2	3	3	3	45.808	41.214	2	1.9965E-09	37274	160511_QHF_FH_JSI10i_1	168.23	132.74			0.80971	0.96489	48.171	11	6	Median	0.76927	0.60728	72.935	2	2	Median	0.68312	0.79343	31.095	3	2	Median	1.1363	0.68861	55.677	3	2	Plateau	0.96615	1.0137	66.107	3	0	Median	6403700000	3290600000	3113100000	2127600000	830190000	1297400000	1019900000	551450000	468440000	2294900000	1262400000	1032500000	961340000	646520000	314820000	9162	4027	8664	56627;56628;56629;56630;56631;56632;56633;56634;56635;56636;56637	76543;76544;76545;76546;76547;76548;76549;76550;76551;76552;76553;76554;76555;76556	76548			14	
DSEDMGVVVSLGTGNR	0	Unmodified	1634.757	0.75699912	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	66.454	65.763	2	3.1936E-05	59791	160511_QHF_FH_JSI11i_1	99.011	91.444			0.99134	0.80418	21.382	3	2	Median	0.99134	0.80418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1734	1.1182	NaN	1	0	Median	0.73805	0.74894	NaN	1	1	Median	50941000	30273000	20668000	10562000	6867100	3694900	0	0	0	22159000	11418000	10741000	18220000	11988000	6231900	9163	1857	8665	56638;56639;56640	76557;76558;76559;76560	76558			4	
DSEDNPQTLLFSATCPHWVFNVAK	1	Unmodified	2775.2963	0.29626496	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.4	101.41	3	4.7051E-08	88051	160511_QHF_FH_JSI12i_3	76.889	7.1233			3.2751	3.2843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2751	3.2843	NaN	1	1	Median	161100000	23044000	138060000	0	0	0	0	0	0	0	0	0	161100000	23044000	138060000	9164	4940	8666	56641	76561	76561			1	
DSEDVPMVLVGNK	1	Unmodified	1401.681	0.68098063	786	P01116	KRAS	GTPase KRas;GTPase KRas, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.529	65.928	2	9.0702E-07	59663	160511_QHF_FH_JSI10i_1	128.91	114.94			1.0529	1.0427	11.82	4	0	Median	1.3206	1.0842	NaN	1	0	Median	0.73782	0.86984	NaN	1	0	Median	1.1435	1.1408	NaN	1	0	Median	0.96948	1.0027	NaN	1	0	Median	494830000	236380000	258450000	107690000	49377000	58313000	145150000	75698000	69456000	131160000	58849000	72313000	110820000	52451000	58369000	9165	786	8667	56642;56643;56644;56645	76562;76563;76564;76565;76566;76567;76568;76569	76567			8	
DSEEIDDVTR	0	Unmodified	1177.5099	0.50987578	5564	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.63	27.074	2	0.014295	24201	160511_QHF_FH_JSI12i_1	45.368	32.741			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9166	5564	8668	56646	76570	76570			1	
DSEEPFSSVEIQAALSK	1	Unmodified	1835.8789	0.8788884	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	85.372	84.915	2	5.4492E-07	77367	160511_QHF_FH_JSI10i_1	90.731	75.192			0.75253	0.79564	14.845	4	1	Median	1.0603	0.86724	NaN	1	1	Median	0.6152	0.72995	NaN	1	0	Median	0.68377	0.65209	NaN	1	0	Median	0.82821	0.89329	NaN	1	0	Median	137830000	76613000	61218000	15775000	7762100	8012900	55553000	32201000	23352000	29831000	18812000	11020000	36671000	17838000	18833000	9167	1254	8669	56647;56648;56649;56650;56651	76571;76572;76573;76574;76575;76576;76577;76578	76577			8	
DSENTPVK	1	Unmodified	888.41888	0.41887593	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.33	5.19	1				2							1	2	8.4425	3.4914	2	0.017244	5450	160511_QHF_FH_JSI12i_1	58.716	31.579			0.77309	0.81632	34.186	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0045	0.9271	NaN	1	0	Median	0.60614	0.63001	36.639	2	1	Median	73955000	43781000	30174000	0	0	0	0	0	0	3339200	1775300	1564000	70616000	42006000	28610000	9168	3907	8670	56652;56653;56654	76579;76580	76580			2	
DSEPLGIEEAQIGK	1	Unmodified	1484.7359	0.73585297	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			59.533	58.776	2	0.00016184	53156	160511_QHF_FH_JSI10i_1	110.08	90.315			0.81327	0.7846	40.407	2	2	Median	0.73769	0.58961	NaN	1	1	Median	0.89659	1.0441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90856000	44615000	46242000	39995000	22613000	17381000	50861000	22001000	28860000	0	0	0	0	0	0	9169	708	8671	56655;56656	76581;76582	76581			2	
DSEQVAELK	1	Unmodified	1017.4979	0.49785453	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	24.398	23.758	2	1.2148E-05	20319	160511_QHF_FH_JSI9i_1	125.82	88.259			1.6006	1.3073	8.5136	3	3	Plateau	1.6006	1.3042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5574	1.5132	NaN	1	1	Median	1.2213	1.3073	NaN	1	1	Median	328010000	136810000	191200000	133200000	55375000	77826000	0	0	0	87805000	28107000	59698000	107000000	53332000	53672000	9170	446	8672	56657;56658;56659	76583;76584;76585	76585			3	
DSEQVTVSLQNLGIHAGAYHANLEPEDK	1	Unmodified	3034.4632	0.46320695	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	79.252	79.125	3;4	2.3865E-21	68584	160511_QHF_FH_JSI12i_3	118.75	116.37			0.92453	0.88489	5.8286	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.982	0.92352	4.3409	2	0	Median	0.85125	0.85051	3.9038	2	0	Median	274210000	153520000	120690000	0	0	0	0	0	0	82132000	42146000	39986000	192080000	111380000	80702000	9171	1579	8673	56660;56661;56662;56663	76586;76587;76588;76589;76590;76591;76592;76593;76594;76595;76596;76597	76596			12	
DSESADAGGAQR	0	Unmodified	1162.4851	0.48505802	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.33	5.19	1				2							1	2	5.5613	0.64197	2	1.7301E-16	3043	160511_QHF_FH_JSI12i_1	167.12	152.97			1.1038	1.1518	15.145	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90759	0.86589	NaN	1	0	Median	1.0566	1.1208	3.8589	2	0	Median	55339000	27220000	28120000	0	0	0	0	0	0	2069300	1028300	1041000	53270000	26191000	27079000	9172	5685	8674	56664;56665;56666	76598;76599;76600	76599			3	
DSESAPVK	1	Unmodified	831.39741	0.39741221	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.0477	7.8711	2	0.00040178	5696	160511_QHF_FH_JSI10i_1	104.21	38.946			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9173	3685	8675	56667;56668	76601;76602	76602			2	
DSESSPNDFSVSLK	1	Unmodified	1510.6787	0.67873203	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.982	53.318	2	0.00010409	48332	160511_QHF_FH_JSI11i_1	108.35	92.777			0.68339	0.63275	27.584	4	0	Median	0.93485	0.75013	NaN	1	0	Median	0.43956	0.52041	NaN	1	0	Median	0.94168	0.92005	NaN	1	0	Median	0.49958	0.53374	NaN	1	0	Median	185560000	119810000	65746000	40431000	26379000	14052000	45679000	29120000	16559000	54997000	35466000	19531000	44452000	28849000	15604000	9174	1095	8676	56669;56670;56671;56672	76603;76604;76605;76606;76607	76604			5	
DSESTPVDDR	0	Unmodified	1119.468	0.46801097	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.75	4.76	3				1					1	1	2		11.187	9.09	2	1.2637E-05	7809	160511_QHF_FH_JSI9i_1	102.62	70.012			1.6004	1.1332	49.044	4	0	Linear	1.2636	1.0694	NaN	1	0	Median	1.0399	1.2008	NaN	1	0	Median	1.2364	1.1973	84.37	2	0	Median	NaN	NaN	NaN	0	0	Median	96202000	47014000	49188000	29874000	12701000	17173000	29312000	16188000	13124000	37016000	18125000	18891000	0	0	0	9175	5301	8677	56673;56674;56675;56676	76608;76609;76610;76611	76611			3	
DSESTPVDDRISLEQPPNGSDTPNPEK	1	Unmodified	2923.3319	0.331918	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		55.408	54.75	3	2.5061E-09	48564	160511_QHF_FH_JSI9i_1	71.06	64.626			1.2369	1.2025	16.608	3	3	Median	1.7355	1.4134	NaN	1	1	Median	0.91646	1.014	NaN	1	1	Median	1.2369	1.2025	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48309000	22758000	25551000	13925000	2985500	10940000	19454000	14375000	5078900	14929000	5397000	9532000	0	0	0	9176	5301	8678	56677;56678;56679	76612;76613;76614;76615	76615			4	
DSETGENIR	0	Unmodified	1019.452	0.45196697	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	5.53	3	2			3	4				2	3	4	3	11.259	5.982	2	5.6551E-56	4869	160513_QHF_FH_JSI11Kac_3	226.54	165.58			1.027	1.075	11.133	12	2	Median	1.2764	1.0551	4.8982	2	0	Median	0.76551	0.92413	12.937	3	0	Plateau	1.1348	1.1145	12.609	4	1	Median	1.0658	1.1336	11.669	3	1	Plateau	7074800000	3463700000	3611100000	1992000000	874930000	1117000000	98377000	51579000	46799000	2693100000	1364500000	1328500000	2291400000	1172700000	1118700000	9177	1480	8679	56680;56681;56682;56683;56684;56685;56686;56687;56688;56689;56690;56691	76616;76617;76618;76619;76620;76621;76622;76623;76624;76625;76626;76627;76628;76629;76630;76631;76632;76633	76621			18	
DSETGENIRQAASSLQQASLK	1	Unmodified	2232.0982	0.09821708	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			61.996	61.137	3	1.1688E-06	54148	160511_QHF_FH_JSI10i_2	92.932	83.768			5.1157	6.3033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.1157	6.3033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61716000	23993000	37723000	0	0	0	61716000	23993000	37723000	0	0	0	0	0	0	9178	1480	8680	56692	76634	76634			1	
DSETSFVPTNMAVNYVQHNR	0	Unmodified	2308.0542	0.054243775	5146	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	72.01	71.045	3	4.7348E-10	62566	160511_QHF_FH_JSI9i_2	118.05	114.09			1.0485	1.049	20.549	5	3	Median	1.6596	1.4284	NaN	1	1	Median	0.72796	0.88016	NaN	1	0	Median	1.0485	1.049	NaN	1	0	Median	1.0103	1.1162	21.988	2	2	Median	240530000	115260000	125270000	43443000	16184000	27259000	73467000	41595000	31872000	53328000	27058000	26270000	70292000	30427000	39865000	9179	5146	8681	56693;56694;56695;56696;56697	76635;76636;76637;76638;76639;76640	76637			5	
DSFDDRGPSLNPVLDYDHGSR	0	Unmodified	2361.0622	0.062165924	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	4	3	2	63.297	62.628	3;4	2.5024E-05	53416	160511_QHF_FH_JSI12i_3	58.835	57.707			0.90491	0.94445	21.363	11	4	Median	0.99177	0.86523	12.389	2	2	Median	0.72732	0.89264	31.458	4	2	Median	1.2083	1.1574	12.417	3	0	Plateau	0.9147	0.95271	13.029	2	0	Median	618130000	299100000	319020000	32327000	16000000	16327000	166340000	87791000	78545000	274040000	118220000	155810000	145430000	77088000	68339000	9180	1556	8682	56698;56699;56700;56701;56702;56703;56704;56705;56706;56707;56708	76641;76642;76643;76644;76645;76646;76647;76648;76649;76650	76649			10	
DSFEMEEVQSTEGEAPHVPATYQLGLTK	1	Unmodified	3092.4285	0.42846092	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	84.186	83.685	3	1.6167E-07	76338	160511_QHF_FH_JSI12i_1	57.278	55.036			1.182	1.2599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.182	1.2599	NaN	1	0	Median	22276000	10597000	11679000	0	0	0	0	0	0	0	0	0	22276000	10597000	11679000	9181	1305	8683	56709	76651;76652	76652			2	
DSFGSSQASVASSQPVSSEMYRDPFGNPFA	0	Unmodified	3151.3829	0.38290772	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	98.112	97.912	3	2.032E-06	88811	160511_QHF_FH_JSI12i_1	56.903	54.538			1.7939	1.8209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7939	1.8209	NaN	1	1	Median	18245000	4158500	14086000	0	0	0	0	0	0	0	0	0	18245000	4158500	14086000	9182	2137	8684	56710	76653	76653			1	
DSFIGENSR	0	Unmodified	1023.4621	0.46213773	4300;95	O00139;Q99661	KIF2A;KIF2C	Kinesin-like protein KIF2A;Kinesin-like protein KIF2C	no	no	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	23.768	23.362	2	0.050868	20671	160511_QHF_FH_JSI12i_1	55.112	37.726			1.0345	1.1431	10.122	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88582	1.0641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2081	1.2279	NaN	1	0	Median	146930000	70505000	76426000	0	0	0	64686000	34464000	30222000	0	0	0	82245000	36040000	46204000	9183	95;4300	8685	56711;56712	76654	76654			0	
DSFLGSIPGK	1	Unmodified	1019.5288	0.52876073	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	60.575	57.922	2	1.0811E-05	52587	160511_QHF_FH_JSI11i_1	104.2	58.52			0.97295	0.92265	41.921	5	1	Median	1.0755	0.89092	NaN	1	0	Median	1.2437	1.4707	65.937	2	1	Median	0.90569	0.87865	NaN	1	0	Median	0.97295	1.0209	NaN	1	0	Median	1304900000	614270000	690630000	323740000	151850000	171890000	300870000	162400000	138480000	363940000	137930000	226010000	316340000	162080000	154260000	9184	4983	8686	56713;56714;56715;56716;56717;56718	76655;76656;76657;76658;76659;76660;76661;76662;76663;76664;76665;76666;76667;76668;76669	76655			15	
DSFPWEVPK	1	Unmodified	1103.5288	0.52876073	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.22	4	1				2	3			1	4	2	3	73.897	68.736	2	5.0724E-06	63450	160511_QHF_FH_JSI11i_1	117.04	94.95			0.95296	1.0357	30.902	10	2	Median	1.1789	0.95876	NaN	1	0	Median	0.89379	1.0566	51.524	4	2	Median	1.0645	1.0396	14.364	2	0	Median	0.95688	1.0166	11.148	3	0	Median	1876500000	939840000	936660000	430290000	207880000	222410000	485620000	258390000	227230000	570960000	297160000	273800000	389630000	176410000	213210000	9185	1370	8687	56719;56720;56721;56722;56723;56724;56725;56726;56727;56728	76670;76671;76672;76673;76674;76675;76676;76677;76678;76679;76680;76681;76682;76683;76684;76685;76686;76687;76688;76689;76690;76691;76692;76693;76694	76672			25	
DSFTAVVITGVQPEHIQYLK	1	Unmodified	2244.179	0.17903358	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	89.936	89.358	3	5.8233E-08	77220	160511_QHF_FH_JSI12i_2	89.468	70.709			1.1999	1.29	37.882	4	2	Linear	0.62184	0.52892	NaN	1	1	Median	0.62609	0.76844	NaN	1	1	Median	1.2502	1.2591	NaN	1	0	Median	0.95847	1.0408	NaN	1	0	Median	67724000	41020000	26704000	10459000	6832400	3626900	14554000	10707000	3847000	24906000	14741000	10166000	17805000	8740100	9064700	9186	28	8688	56729;56730;56731;56732;56733	76695;76696;76697;76698;76699;76700;76701;76702	76697			8	
DSGAALYVFSEFNR	0	Unmodified	1574.7365	0.73652168	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			92.54	92.505	2	0.00076402	83902	160511_QHF_FH_JSI10i_1	87.618	73.46			1.6514	1.865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6514	1.865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20696000	6968500	13727000	0	0	0	20696000	6968500	13727000	0	0	0	0	0	0	9187	4348	8689	56734	76703	76703			1	
DSGDVAALR	0	Unmodified	902.44576	0.44575938	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	24.536	21.939	2	0.0010246	19485	160511_QHF_FH_JSI12i_1	70.856	32.437			0.99162	0.91499	24.154	4	0	Median	0.85802	0.71865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1678	1.1244	4.9348	2	0	Median	0.75702	0.77103	NaN	1	0	Median	232010000	117060000	114950000	63681000	33308000	30373000	0	0	0	86363000	42708000	43655000	81964000	41040000	40923000	9188	1500	8690	56735;56736;56737;56738	76704;76705	76704			2	
DSGEEAAEPSAPSR	0	Unmodified	1401.6008	0.60081606	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	16.398	15.336	2	5.1197E-05	12843	160511_QHF_FH_JSI12i_1	76.255	65.503			1.7398	1.4512	NaN	1	0	Median	1.7398	1.4512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23390000	11322000	12068000	23390000	11322000	12068000	0	0	0	0	0	0	0	0	0	9189	2157	8691	56739;56740;56741	76706;76707;76708	76706			3	
DSGITYLGIK	1	Unmodified	1065.5706	0.57062555	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	2	3	65.44	60.126	2	0.00038461	54531	160511_QHF_FH_JSI12i_1	76.221	65.152			0.90374	0.89248	38.011	8	4	Median	1.0203	0.85008	NaN	1	0	Median	0.72026	0.83836	24.313	2	2	Median	1.0357	1.0269	13.525	2	1	Median	0.8399	0.85346	66.21	3	1	Median	499720000	271970000	227750000	97648000	47686000	49962000	123650000	65846000	57801000	143320000	83589000	59729000	135110000	74851000	60259000	9190	1734	8692	56742;56743;56744;56745;56746;56747;56748;56749;56750	76709;76710;76711;76712;76713;76714;76715;76716;76717;76718;76719	76711			11	
DSGKPLHIK	2	Acetyl (K)	1035.5713	0.57129425	3451	Q8IXZ2	ZC3H3	Zinc finger CCCH domain-containing protein 3	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			37.064	27.452	3	0.014129	16052	160513_QHF_FH_JSI10Kac_4	37.065	23.687			0.69697	0.83553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69697	0.83553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4379000	2408800	1970200	0	0	0	4379000	2408800	1970200	0	0	0	0	0	0	9191	3451	8693	56751	76720	76720	2862		1	
DSGKPSTEK	2	Acetyl (K)	989.46655	0.46655441	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.484				3	5						2	3	3	10.125	2.7259	2	0.0016729	3297	160513_QHF_FH_JSI11Kac_2	88.136	41.054			1.2671	1.3399	200.71	5	1	Median	NaN	NaN	NaN	0	0	Median	0.66531	0.7793	8.9983	2	0	Median	1.7839	1.7264	NaN	1	0	Median	10.228	11.008	297.84	2	1	Median	158380000	59121000	99261000	0	0	0	76396000	45158000	31239000	23420000	3015100	20405000	58565000	10948000	47617000	9192	3063	8694	56752;56753;56754;56755;56756;56757;56758;56759	76721;76722;76723;76724;76725;76726;76727;76728;76729;76730	76721	2751		10	
DSGNIPEAIASYR	0	Unmodified	1391.6681	0.66810776	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.812	59.421	2	0.012436	53747	160511_QHF_FH_JSI10i_1	55.04	42.424			0.58392	0.70384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58392	0.70384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67036000	41152000	25884000	0	0	0	67036000	41152000	25884000	0	0	0	0	0	0	9193	274	8695	56760	76731	76731			1	
DSGNKPPGLLPR	1	Unmodified	1249.6779	0.67788459	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.39	3	8	6				2	1		1	5	8	6	33.394	31.174	2;3	0.00020541	26682	160511_QHF_FH_JSI11i_3	107.21	79.902			0.94751	1.073	26.945	17	3	Median	0.94334	0.80004	NaN	1	0	Median	0.76095	0.92872	17.199	4	0	Median	1.1365	1.1332	18.32	7	1	Median	0.94751	0.97291	43.173	5	2	Median	1813700000	1000300000	813380000	163770000	79213000	84554000	338670000	192970000	145700000	791740000	408050000	383700000	519540000	320100000	199430000	9194	5526	8696	56761;56762;56763;56764;56765;56766;56767;56768;56769;56770;56771;56772;56773;56774;56775;56776;56777;56778;56779;56780	76732;76733;76734;76735;76736;76737;76738;76739;76740;76741;76742;76743;76744;76745;76746;76747;76748	76733			17	
DSGPLFNTDYDILK	1	Unmodified	1596.7672	0.7671531	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	89.8	89.365	2	9.7387E-05	81373	160511_QHF_FH_JSI12i_1	138.63	119.31			0.82116	0.80715	12.425	6	4	Median	0.91198	0.73228	12.088	2	2	Median	0.71914	0.85893	15.368	2	2	Median	0.95825	0.90312	NaN	1	0	Median	0.80021	0.81679	NaN	1	0	Median	347770000	196920000	150850000	79752000	48176000	31576000	135300000	71599000	63698000	66528000	36935000	29593000	66193000	40208000	25985000	9195	2618	8697	56781;56782;56783;56784;56785;56786	76749;76750;76751;76752;76753;76754;76755;76756;76757;76758	76752			10	
DSGPLSDPITGKPYVPLLEAEEVR	1	Unmodified	2581.3275	0.32754831	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	98.365	98.284	3	3.4838E-06	88970	160511_QHF_FH_JSI10i_1	64.954	51.082			0.95904	1.0327	29.794	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1219	1.2748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81984	0.8365	NaN	1	1	Median	42754000	27534000	15221000	0	0	0	24039000	15512000	8527800	0	0	0	18715000	12022000	6692800	9196	3221	8698	56787;56788	76759;76760	76760			2	
DSGPPPSTVSEAEFEDIMK	1	Unmodified	2034.9092	0.90920225	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.335	81.867	2	3.033E-33	72943	160511_QHF_FH_JSI9i_1	196.33	183.97			0.92368	0.89612	14.473	4	0	Median	0.92462	0.7582	NaN	1	0	Median	0.68983	0.81904	NaN	1	0	Median	1.0771	1.0283	NaN	1	0	Median	0.92275	0.98046	NaN	1	0	Median	293320000	161880000	131440000	92606000	50302000	42304000	67986000	39832000	28154000	72663000	34721000	37943000	60060000	37025000	23036000	9197	3553	8699	56789;56790;56791;56792	76761;76762;76763;76764;76765;76766;76767;76768;76769;76770;76771;76772;76773;76774	76774			14	
DSGPPTKK	2	Unmodified	828.43413	0.43413207	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.889	46.209	2	0.022012	41756	160511_QHF_FH_JSI11i_1	44.692	9.7607			0.97777	1.5369	234.72	4	1	Linear	1.3328	1.0817	NaN	1	0	Median	0.90467	1.1086	NaN	1	0	Median	1.0568	1.0371	NaN	1	0	Median	0.0093183	0.0098396	NaN	1	1	Median	947090000	513310000	433780000	269830000	111710000	158120000	281540000	130830000	150710000	252780000	128460000	124320000	142940000	142310000	625260	9198	4657	8700	56793;56794;56795;56796	76775;76776;76777	76775			3	
DSGRDYVAQFEASALGK	1	Unmodified	1812.8642	0.86424139	58	CON__P15497			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	2	4	74.646	73.977	2;3	1.939E-06	64823	160511_QHF_FH_JSI11i_2	88.551	69.718		+	0.9729	1.0212	31.224	9	1	Median	0.9729	0.8413	NaN	1	0	Median	0.55643	0.67242	27.44	2	0	Median	1.3135	1.2744	11.953	2	0	Median	1.0127	1.1156	23.764	4	1	Median	557900000	267420000	290470000	79244000	44798000	34446000	88411000	50870000	37540000	174180000	81038000	93139000	216070000	90718000	125350000	9199	58	8701	56797;56798;56799;56800;56801;56802;56803;56804;56805	76778;76779;76780;76781;76782;76783;76784;76785;76786;76787;76788;76789;76790;76791;76792;76793;76794	76787			17	
DSGRGDSVSDSGSDALR	0	Unmodified	1679.7347	0.73468378	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.78	8					3	1			2	4	3	3	19.287	16.32	2;3	1.4303E-11	14081	160511_QHF_FH_JSI10i_1	126.25	106.67			1.0171	1.0013	9.5005	12	0	Median	1.2771	1.0384	7.8342	2	0	Median	0.78488	0.93726	13.633	4	0	Median	1.0082	0.97962	6.769	3	0	Plateau	1.032	1.0791	8.4024	3	0	Median	1827700000	904140000	923580000	398520000	188850000	209670000	473540000	260930000	212620000	461540000	204930000	256610000	494110000	249430000	244680000	9200	2846	8702	56806;56807;56808;56809;56810;56811;56812;56813;56814;56815;56816;56817	76795;76796;76797;76798;76799;76800;76801;76802;76803;76804;76805;76806;76807;76808;76809;76810;76811;76812;76813;76814	76808			20	
DSGSAAEAPR	0	Unmodified	959.43084	0.4308376	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	7.0244	6.5271	2	0.0036636	4197	160511_QHF_FH_JSI9i_1	56.209	46.298			1.5293	1.3888	35.854	2	0	Median	2.2191	1.7896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.0778	NaN	1	0	Median	104310000	45323000	58992000	38766000	15155000	23610000	0	0	0	0	0	0	65549000	30167000	35382000	9201	644	8703	56818;56819	76815;76816	76816			2	
DSGSDQDLDGAGVR	0	Unmodified	1390.5961	0.59606503	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	22.573	22.09	2	1.5078E-21	19205	160511_QHF_FH_JSI11i_1	177.44	161.56			0.84866	0.96152	21.336	5	2	Median	1.216	1.0334	NaN	1	0	Median	0.78787	0.89453	10.213	2	2	Median	0.66774	0.63571	NaN	1	0	Median	1.0025	1.0762	NaN	1	0	Median	158100000	77480000	80623000	31349000	11025000	20324000	47097000	24857000	22240000	39705000	22571000	17133000	39952000	19027000	20925000	9202	3341	8704	56820;56821;56822;56823;56824	76817;76818;76819;76820;76821	76817			5	
DSGSQEVLSELR	0	Unmodified	1318.6365	0.63647328	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			54.026	53.627	2	1.9026E-05	48390	160511_QHF_FH_JSI10i_1	91.123	64.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9203	4472	8705	56825	76822	76822			1	
DSGTLQSQEAK	1	Unmodified	1162.5466	0.54659564	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	11.031	10.512	2	1.7645E-09	7746	160511_QHF_FH_JSI9i_1	132.88	122.64			1.5827	1.3	56.799	3	1	Median	1.5827	1.3	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4221	1.4834	79.6	2	1	Median	149960000	55015000	94940000	70693000	24972000	45721000	0	0	0	0	0	0	79262000	30043000	49219000	9204	3011	8706	56826;56827;56828	76823;76824	76824			2	
DSGVPGLEADTTGIQVK	1	Unmodified	1685.8472	0.84719434	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	65.87	65.434	2	3.8016E-07	59507	160511_QHF_FH_JSI12i_1	94.191	77.249			1.4733	1.3944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4733	1.3944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25095000	9777500	15318000	0	0	0	0	0	0	25095000	9777500	15318000	0	0	0	9205	3517	8707	56829;56830;56831	76825;76826;76827	76826			3	
DSGVQACFNR	0	Unmodified	1152.4982	0.49820566	2049	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		25.979	25.803	2	0.042657	22741	160511_QHF_FH_JSI11i_1	44.719	38.996			1.9648	1.8308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9648	1.8308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50093000	13558000	36536000	0	0	0	0	0	0	50093000	13558000	36536000	0	0	0	9206	2049	8708	56832	76828	76828			1	
DSGVVPVGTEEAPK	1	Unmodified	1383.6882	0.6881745	3400	Q8IUX1	TMEM126B	Complex I assembly factor TMEM126B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	39.937	39.311	2	0.00017899	35595	160511_QHF_FH_JSI12i_1	93.258	80.138			1.4089	1.251	46.492	5	2	Median	1.5612	1.251	NaN	1	0	Median	0.86986	1.0209	NaN	1	0	Median	1.8465	1.8128	NaN	1	1	Median	0.84	0.89278	71.38	2	1	Median	214470000	107340000	107130000	40358000	19061000	21297000	47142000	22421000	24721000	44228000	17091000	27137000	82740000	48766000	33974000	9207	3400	8709	56833;56834;56835;56836;56837;56838	76829;76830;76831;76832;76833;76834	76831			6	
DSGYLHLLYK	1	Unmodified	1207.6237	0.62372375	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	66.663	65.85	3	0.0012458	58444	160511_QHF_FH_JSI10i_2	63.283	53.851			0.59025	0.62833	69.111	4	4	Median	NaN	NaN	NaN	0	0	Median	0.24201	0.2852	NaN	1	1	Median	0.63512	0.65092	75.504	2	2	Median	0.91836	1.0344	NaN	1	1	Median	77817000	54378000	23439000	0	0	0	16223000	13140000	3082800	50198000	34585000	15614000	11396000	6653400	4742500	9208	1443	8710	56839;56840;56841;56842;56843	76835;76836;76837;76838;76839	76839			5	
DSGYPETLVNLIVLSQHLGKPPEVTNR	1	Unmodified	2975.5716	0.57163518	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	2	3	1	96.91	90.871	3;4	3.5967E-84	46926	160513_QHF_FH_JSI12Kac_6	212.97	200.78			0.85473	0.87494	8.8737	8	1	Median	0.98636	0.84269	17.313	2	1	Median	0.79902	0.94577	3.0024	2	0	Median	0.91141	0.8497	4.7752	3	0	Median	0.82821	0.87463	NaN	1	0	Median	3776500000	2053500000	1722900000	514970000	265630000	249340000	1028300000	607450000	420800000	1798500000	950940000	847580000	434750000	229520000	205230000	9209	178	8711	56844;56845;56846;56847;56848;56849;56850;56851	76840;76841;76842;76843;76844;76845;76846;76847;76848;76849;76850;76851;76852	76847			13	
DSHGVAQVR	0	Unmodified	967.48354	0.48354187	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	6.36	7	8	5				6	8	1	8	9	9	9	8.889	4.8769	2;3	4.4939E-07	5524	160511_QHF_FH_JSI9i_2	138.83	111			0.95633	0.98024	17.131	35	5	Median	1.1875	0.98518	11.812	8	0	Median	0.82804	0.99023	19.792	9	2	Median	0.98087	0.97668	18.789	9	3	Median	0.85922	0.95254	18.916	9	0	Median	19540000000	9943500000	9596500000	2972800000	1318500000	1654300000	5591800000	3062700000	2529100000	5803100000	2808800000	2994300000	5172300000	2753500000	2418900000	9210	1995	8712	56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881;56882;56883;56884;56885;56886	76853;76854;76855;76856;76857;76858;76859;76860;76861;76862;76863;76864;76865;76866;76867;76868;76869;76870;76871;76872;76873;76874;76875;76876;76877;76878;76879;76880;76881;76882;76883;76884;76885;76886;76887;76888;76889;76890;76891;76892;76893;76894	76877			40	
DSHIFQLFWR	0	Unmodified	1347.6724	0.67240528	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			86.185	80.484	2;3	3.7655E-13	45190	160513_QHF_FH_JSI10Kac_6	157.66	132.19			0.8026	0.92232	3.5575	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8026	0.92232	3.5575	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169880000	89780000	80105000	0	0	0	169880000	89780000	80105000	0	0	0	0	0	0	9211	3009	8713	56887;56888	76895;76896;76897	76895			3	
DSHPSEEPVK	1	Unmodified	1123.5146	0.51456723	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.4957	7.8114	2	0.0079688	5395	160511_QHF_FH_JSI9i_1	50.805	28.719			1.1564	0.92947	NaN	1	0	Median	1.1564	0.92947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39459000	18559000	20901000	39459000	18559000	20901000	0	0	0	0	0	0	0	0	0	9212	2939	8714	56889	76898	76898			1	
DSIANATVLLDYHLNYLK	1	Unmodified	2062.0735	0.073505879	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.37	100.19	3	7.0071E-05	86130	160511_QHF_FH_JSI12i_2	65.231	56.067			0.98919	1.0222	18.054	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9083	0.89974	NaN	1	0	Median	1.0773	1.1614	NaN	1	0	Median	55777000	28085000	27692000	0	0	0	0	0	0	32900000	17842000	15058000	22877000	10244000	12633000	9213	2248	8715	56890;56891	76899;76900;76901;76902	76899			4	
DSIFEPAK	1	Unmodified	905.44945	0.44944778	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	41.683	36.8	2	0.0007303	32478	160511_QHF_FH_JSI9i_1	98.997	87.628			0.89831	0.92399	14.359	8	0	Median	1.1918	0.96426	NaN	1	0	Median	0.77458	0.89823	29.551	2	0	Median	0.89098	0.86076	11.795	3	0	Median	0.89461	0.94704	1.8537	2	0	Median	780330000	423570000	356770000	180670000	94525000	86143000	182430000	112070000	70360000	220980000	116210000	104770000	196250000	100760000	95492000	9214	1857	8716	56892;56893;56894;56895;56896;56897;56898;56899	76903;76904;76905;76906;76907;76908;76909;76910;76911;76912;76913;76914;76915	76911			13	
DSIFSNLTGQLDYQGFEK	1	Unmodified	2060.9691	0.96910039	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	101.04	100.97	2;3	8.0584E-184	91668	160511_QHF_FH_JSI10i_1	395.95	362.76			0.9362	1.0964	17.29	5	1	Median	NaN	NaN	NaN	0	0	Median	0.89487	1.0565	5.6235	2	0	Median	0.93764	0.90857	26.577	2	0	Median	1.1305	1.161	NaN	1	1	Median	649110000	314600000	334510000	0	0	0	217640000	113590000	104050000	243470000	118340000	125130000	188000000	82675000	105330000	9215	1507	8717	56900;56901;56902;56903;56904	76916;76917;76918;76919;76920;76921	76921			6	
DSIIYLTADSPNVMTTFR	0	Unmodified	2042.9983	0.99829203	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									2	2	2	99.832	99.726	2;3	3.2143E-08	90468	160511_QHF_FH_JSI12i_1	125.53	78.935			0.6554	0.64533	4.8237	4	2	Median	NaN	NaN	NaN	0	0	Median	0.56484	0.64218	NaN	1	0	Median	0.69357	0.67484	7.0233	2	1	Median	0.6498	0.64849	NaN	1	1	Median	61239000	37314000	23925000	0	0	0	24157000	16178000	7979100	20584000	11782000	8802500	16498000	9354300	7143700	9216	3217	8718	56905;56906;56907;56908;56909;56910	76922;76923;76924;76925;76926;76927;76928;76929;76930	76925			9	
DSIIYLTADSPNVMTTFRHDK	1	Unmodified	2423.1791	0.17910994	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		81.218	81.218	3	0.0015757	72466	160511_QHF_FH_JSI11i_3	47.752	39.855			4.8029	4.5629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8029	4.5629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24965000	4866700	20099000	0	0	0	0	0	0	24965000	4866700	20099000	0	0	0	9217	3217	8719	56911	76931	76931			1	
DSILSEMK	1	Unmodified	921.44773	0.44773322	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	48.465	47.885	2	0.0016738	43517	160511_QHF_FH_JSI12i_1	83.206	25.925			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9218	5479	8720	56912;56913;56914	76932;76933;76934	76933			3	
DSILSIVHVK	1	Unmodified	1109.6445	0.64445919	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.46	6.77		5	1					2	5	5	2	3	3	72.295	66.958	2;3	7.2574E-07	35967	160513_QHF_FH_JSI11Kac_6	102.06	91.156			1.0604	1.1004	21.777	11	1	Median	1.2437	1.0239	11.878	4	0	Median	0.94905	1.1414	1.7484	2	0	Median	0.9209	0.89246	16.731	2	0	Median	1.1966	1.3137	30.822	3	1	Median	380770000	186140000	194640000	117640000	51372000	66268000	97656000	52667000	44989000	98585000	45953000	52632000	66895000	36145000	30749000	9219	404	8721	56915;56916;56917;56918;56919;56920;56921;56922;56923;56924;56925;56926;56927	76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945;76946;76947;76948;76949;76950;76951;76952;76953	76941			19	
DSIMNIEPAILVMHHSMK	1	Unmodified	2065.0159	0.01587312	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.33	0.471		2	1								1	2		88.578	88.223	4	2.2447E-05	78393	160511_QHF_FH_JSI11i_3	59.512	50.416			0.9855	0.9662	8.1706	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78187	0.9662	NaN	1	0	Median	1.0507	1.0105	10.959	2	0	Median	NaN	NaN	NaN	0	0	Median	44528000	20980000	23549000	0	0	0	9728100	4533600	5194500	34800000	16446000	18354000	0	0	0	9220	3028	8722	56928;56929;56930	76954;76955	76954			2	
DSINFLDHINGK	1	Unmodified	1371.6783	0.67827852	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	64.305	63.414	3	2.3417E-05	55145	160511_QHF_FH_JSI11i_2	89.959	80.426			1.0689	1.0012	25.489	5	2	Median	1.1418	1.0012	NaN	1	0	Median	0.90356	1.1154	48.456	2	2	Median	0.92097	0.96053	NaN	1	0	Median	1.0689	1.1533	NaN	1	0	Median	143940000	69496000	74442000	17706000	9092100	8613900	57661000	27970000	29690000	37047000	18132000	18915000	31524000	14302000	17223000	9221	4182	8723	56931;56932;56933;56934;56935	76956;76957;76958;76959;76960;76961	76958			6	
DSINFLDHINGKK	2	Unmodified	1499.7732	0.77324153	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.244	53.008	4	0.00046867	45482	160511_QHF_FH_JSI12i_3	67.275	56.005			0.26409	0.27366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26409	0.27366	NaN	1	1	Median	39056000	30489000	8566900	0	0	0	0	0	0	0	0	0	39056000	30489000	8566900	9222	4182	8724	56936	76962	76962			1	
DSIPSEVDYETR	0	Unmodified	1409.6311	0.63105355	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		43.318	42.939	2	7.1975E-05	38799	160511_QHF_FH_JSI11i_1	105.98	94.261			0.61407	0.60087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61407	0.60087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83837000	53612000	30224000	0	0	0	0	0	0	83837000	53612000	30224000	0	0	0	9223	5468	8725	56937	76963	76963			1	
DSIPVTELSASGPFESHDLLRK	1	Unmodified	2397.2176	0.21760393	5491	Q9Y244	POMP	Proteasome maturation protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									1	4	78.514	78.387	3;4	2.8613E-06	68034	160511_QHF_FH_JSI12i_3	72.644	59.017			1.3066	1.26	52.771	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93627	0.8676	NaN	1	0	Median	1.8235	1.8299	NaN	1	0	Median	86601000	42195000	44406000	0	0	0	0	0	0	44531000	24297000	20234000	42070000	17898000	24172000	9224	5491	8726	56938;56939;56940;56941;56942	76964;76965;76966;76967;76968	76966			5	
DSISIENK	1	Unmodified	904.45018	0.45017606	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		21.431	21.232	2	8.6978E-05	18362	160511_QHF_FH_JSI10i_1	142.64	99.398			1.4013	1.5113	9.6208	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1855	1.4119	NaN	1	1	Median	1.6565	1.6177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166340000	78401000	87942000	0	0	0	75800000	40486000	35314000	90542000	37914000	52628000	0	0	0	9225	676	8727	56943;56944	76969;76970	76970			2	
DSISSYEAQITALK	1	Unmodified	1524.7672	0.7671531	4735	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	5									1	1	2	1	75.694	75.21	2	0.00027729	68443	160511_QHF_FH_JSI12i_1	83.045	67.416			0.98339	0.96076	9.2643	4	1	Median	1.0175	0.83044	NaN	1	0	Median	0.88498	1.0058	NaN	1	0	Median	0.95987	0.91774	NaN	1	1	Median	1.0075	1.0106	NaN	1	0	Median	95664000	52393000	43271000	17493000	9838500	7654400	29841000	15363000	14478000	21001000	11718000	9282700	27330000	15473000	11856000	9226	4735	8728	56945;56946;56947;56948;56949	76971;76972;76973;76974;76975;76976;76977	76974			7	
DSIVAELDR	0	Unmodified	1016.5138	0.51383895	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				54.033	52.856	2	0.0049632	46865	160511_QHF_FH_JSI9i_1	65.305	28.285			3.0833	2.5613	NaN	1	1	Median	3.0833	2.5613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77020000	16011000	61009000	77020000	16011000	61009000	0	0	0	0	0	0	0	0	0	9227	178	8729	56950	76978	76978			1	
DSIVAELDREMSR	0	Unmodified	1519.7301	0.73005609	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	2	5	76.544	75.856	2;3	1.1879E-22	66516	160511_QHF_FH_JSI11i_2	150.21	138.07			1.0867	1.1461	10.711	11	2	Median	1.469	1.2541	8.7268	2	0	Median	0.94663	1.1632	5.3533	2	0	Median	1.0532	1.0622	10.742	2	0	Median	1.0867	1.1205	12.752	5	2	Median	1125900000	538120000	587750000	138680000	62436000	76243000	149620000	83708000	65911000	339760000	158030000	181720000	497810000	233940000	263870000	9228	178	8730	56951;56952;56953;56954;56955;56956;56957;56958;56959;56960;56961	76979;76980;76981;76982;76983;76984;76985;76986;76987;76988;76989;76990;76991;76992	76984			14	
DSIVHQAGMLK	1	Unmodified	1197.6176	0.61759251	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.555	2	9	2							3	4	3	3	37.859	36.984	2;3	2.8674E-05	30650	160511_QHF_FH_JSI10i_3	100.15	79.248			1.0635	1.0339	37.191	11	2	Median	1.307	1.12	4.6193	2	0	Median	0.8125	0.99356	2.3597	3	0	Plateau	1.0635	1.0195	7.3048	3	0	Median	2.4824	2.7769	69.249	3	2	Plateau	1385600000	679060000	706530000	226330000	96687000	129640000	351900000	198220000	153690000	472940000	237230000	235710000	334420000	146930000	187490000	9229	256	8731	56962;56963;56964;56965;56966;56967;56968;56969;56970;56971;56972;56973;56974	76993;76994;76995;76996;76997;76998;76999;77000;77001;77002;77003;77004;77005;77006;77007;77008;77009	76998			17	
DSIVHQAGMLKR	1	Acetyl (K)	1395.7293	0.72926823	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	1	0	0	1			By MS/MS		15.7	0.471								1	2			3		54.466	44.383	2;3	0.0043724	24500	160513_QHF_FH_JSI11Kac_5	57.225	49.501			0.073605	0.072416	40.169	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073605	0.072416	40.169	2	2	Median	NaN	NaN	NaN	0	0	Median	12817000	12416000	400810	0	0	0	0	0	0	12817000	12416000	400810	0	0	0	9230	256	8732	56975;56976;56977	77010;77011;77012	77012	139		3	
DSIVQGFQWGTR	0	Unmodified	1392.6786	0.67861287	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.46	3	4	2				1	6		4	4	5	3	74.189	69.37	2	1.934E-07	64379	160511_QHF_FH_JSI10i_1	133.07	118.86			0.92729	0.94448	21.518	14	12	Median	1.1144	0.91575	19.897	3	3	Median	0.84926	0.98569	20.551	3	2	Median	0.91185	0.88504	21.159	5	4	Median	0.88617	0.9741	35.654	3	3	Median	583600000	315520000	268080000	70427000	38370000	32058000	134150000	69965000	64181000	310720000	167400000	143320000	68303000	39788000	28515000	9231	2609	8733	56978;56979;56980;56981;56982;56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993	77013;77014;77015;77016;77017;77018;77019;77020;77021;77022;77023;77024;77025;77026;77027;77028;77029	77019			17	
DSKPIALK	2	Acetyl (K)	912.52803	0.52803245	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		46.659	37.376	2	0.029605	19984	160513_QHF_FH_JSI10Kac_3	57.177	39.192			0.78036	0.83759	6.8258	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67315	0.79812	NaN	1	0	Median	0.90466	0.87901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18561000	9667000	8893600	0	0	0	9011700	4589500	4422200	9548900	5077500	4471400	0	0	0	9232	5136	8734	56994;56995	77030;77031	77030			2	
DSKPPGNLK	2	Unmodified	954.51345	0.51344502	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								2	4	4	3	9.9627	9.5709	2;3	0.00024774	7129	160511_QHF_FH_JSI11i_1	66.299	46.512			0.92858	0.98211	14.162	13	0	Median	1.0939	0.90398	21.731	2	0	Median	0.81423	0.96043	15.122	4	0	Median	1.1515	1.1244	12.286	4	0	Median	0.89622	0.94961	11.561	3	0	Median	1586300000	773710000	812580000	225230000	98515000	126720000	466530000	254300000	212230000	466760000	193990000	272770000	427770000	226900000	200860000	9233	2094	8735	56996;56997;56998;56999;57000;57001;57002;57003;57004;57005;57006;57007;57008	77032;77033;77034;77035;77036;77037;77038;77039	77032			8	
DSKPSSTPR	1	Unmodified	973.48287	0.48287317	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.43	11	11	6			1	3	1		7	9	9	8	5.2442	3.3541	2;3	1.5534E-05	2497	160511_QHF_FH_JSI12i_1	100.48	81.805			1.0567	1.0459	32.406	26	7	Median	1.2776	1.1162	49.026	7	0	Median	1.0538	1.1567	20.391	5	2	Median	1.0056	0.99048	34.714	7	3	Median	1.0045	1.012	12.443	7	2	Median	78738000000	37242000000	41496000000	17306000000	7140500000	10166000000	20226000000	10475000000	9750800000	23192000000	10251000000	12941000000	18014000000	9375600000	8638300000	9234	857	8736	57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028;57029;57030;57031;57032;57033;57034;57035;57036;57037;57038;57039;57040;57041	77040;77041;77042;77043;77044;77045;77046;77047;77048;77049;77050;77051;77052;77053;77054;77055;77056;77057;77058;77059;77060;77061;77062;77063;77064;77065;77066;77067;77068;77069;77070;77071;77072;77073;77074;77075;77076;77077;77078;77079;77080	77051			41	
DSKPSSTPR	1	Acetyl (K)	1015.4934	0.49343786	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.7				1	3	3					2	3	2	12.85	5.5527	2	0.00020075	5478	160513_QHF_FH_JSI11Kac_3	107.57	87.054			0.91036	0.91547	3.7817	7	0	Median	NaN	NaN	NaN	0	0	Median	0.76526	0.88163	0.7547	2	0	Median	0.92918	0.91547	2.6633	3	0	Median	0.88459	0.95416	2.8605	2	0	Median	698030000	340100000	357920000	0	0	0	205230000	101110000	104120000	239390000	111310000	128080000	253400000	127680000	125720000	9235	857	8736	57042;57043;57044;57045;57046;57047;57048	77081;77082;77083;77084;77085;77086;77087;77088;77089	77083	541		9	
DSLAWLSLVK	1	Unmodified	1130.6336	0.63356015	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.17	5.3	1	4							1	2	2	1	1	99.109	97.573	2	5.5871E-05	88244	160511_QHF_FH_JSI11i_2	91.867	75.091			0.98083	1.0092	46.613	6	2	Median	1.4528	1.2604	44.759	2	1	Median	0.59418	0.69605	71.093	2	1	Median	0.91201	0.89434	NaN	1	0	Median	1.0269	1.1089	NaN	1	0	Median	213110000	111770000	101340000	43901000	22448000	21453000	47717000	27619000	20098000	64930000	32928000	32002000	56557000	28775000	27782000	9236	5555	8737	57049;57050;57051;57052;57053;57054	77090;77091;77092;77093	77091			3	
DSLDIEVK	1	Unmodified	917.47058	0.47057715	4331;4332	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	no	no	0	0	0	0				By MS/MS	1	0	2												2	42.515	41.887	2	0.00037184	38084	160511_QHF_FH_JSI12i_1	105.14	9.2263			1.9883	2.0474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9883	2.0474	NaN	1	1	Median	88909000	35298000	53611000	0	0	0	0	0	0	0	0	0	88909000	35298000	53611000	9237	4331;4332	8738	57055;57056	77094;77095	77095			2	
DSLDPSFTHAMQLLTAEIEK	1	Unmodified	2245.0936	0.093648974	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	102.1	102.02	3	2.2284E-100	87872	160511_QHF_FH_JSI12i_2	262.21	248.36			1.1078	1.1777	10.961	6	1	Median	1.1312	0.95698	NaN	1	0	Median	0.97288	1.1685	13.42	2	0	Median	1.1896	1.2408	NaN	1	0	Median	1.1262	1.1777	3.1964	2	1	Median	3606700000	1724000000	1882800000	532620000	211010000	321600000	824700000	412780000	411920000	1020500000	475440000	545090000	1228900000	624730000	604140000	9238	2255	8739	57057;57058;57059;57060;57061;57062	77096;77097;77098;77099;77100;77101	77096			6	
DSLFDLDGPK	1	Unmodified	1105.5292	0.52915466	4444	Q9BUL5	PHF23	PHD finger protein 23	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.647	67.338	2	0.0029604	61017	160511_QHF_FH_JSI10i_1	71.425	58.048			1.6332	1.8503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6332	1.8503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23261000	8432000	14829000	0	0	0	23261000	8432000	14829000	0	0	0	0	0	0	9239	4444	8740	57063	77102	77102			1	
DSLGAYASQDANEQGQDLGK	1	Unmodified	2065.9189	0.91885573	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	45.811	45.272	2	1.4878E-99	41112	160511_QHF_FH_JSI12i_1	259.1	227.91			0.61547	0.65552	14.143	2	1	Median	NaN	NaN	NaN	0	0	Median	0.53538	0.59313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70754	0.72447	NaN	1	0	Median	46089000	28637000	17453000	0	0	0	19313000	15191000	4122100	0	0	0	26776000	13445000	13330000	9240	4581	8741	57064;57065;57066	77103;77104;77105;77106;77107	77105			5	
DSLHQPQYVEK	1	Unmodified	1342.6517	0.65172941	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								3	3	1	2	22.956	22.357	2;3	2.4764E-05	19709	160511_QHF_FH_JSI12i_1	100.58	78.005			1.0766	0.88341	36.449	9	4	Median	1.0766	0.88341	35.655	3	1	Median	0.67217	0.7748	41.704	3	2	Plateau	1.7118	1.6411	NaN	1	1	Median	0.74919	0.79219	3.0341	2	0	Median	532960000	292460000	240500000	134280000	62300000	71980000	166510000	100430000	66085000	33100000	14071000	19030000	199070000	115660000	83407000	9241	3921	8742	57067;57068;57069;57070;57071;57072;57073;57074;57075	77108;77109;77110;77111;77112;77113;77114	77110			7	
DSLIAIDR	0	Unmodified	901.4869	0.48689592	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	46.305	45.545	2	0.014487	41219	160511_QHF_FH_JSI12i_1	51.346	6.8988			1.5892	1.4547	19.849	3	1	Plateau	1.4747	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2098	1.1573	NaN	1	1	Median	1.6339	1.6871	NaN	1	0	Median	97247000	38961000	58286000	31412000	13642000	17769000	0	0	0	30831000	13723000	17108000	35005000	11596000	23409000	9242	708	8743	57076;57077;57078	77115;77116	77116			2	
DSLIDSLT	0	Unmodified	862.42838	0.42837799	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.659	74.164	1	0.0023651	67433	160511_QHF_FH_JSI10i_1	123.99	107.83			0.9143	0.9083	14.056	4	1	Median	1.1049	0.90163	NaN	1	0	Median	0.88745	1.0406	NaN	1	0	Median	0.94196	0.91503	NaN	1	0	Median	0.72271	0.74026	NaN	1	1	Median	441280000	225840000	215440000	102410000	48848000	53561000	114240000	55807000	58437000	96553000	48159000	48394000	128070000	73023000	55051000	9243	1881	8744	57079;57080;57081;57082	77117;77118;77119;77120	77119			3	
DSLIELK	1	Unmodified	816.45928	0.45928418	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	48.999	48.372	2	0.0055967	43992	160511_QHF_FH_JSI12i_1	94.262	56.616			0.8789	1.0074	30.98	5	2	Median	1.2237	1.0074	NaN	1	0	Median	0.86729	1.0129	NaN	1	0	Median	1.1844	1.1468	58.471	2	2	Median	0.8789	0.89901	NaN	1	0	Median	260420000	132710000	127700000	53312000	26620000	26693000	51720000	28014000	23706000	88615000	41224000	47391000	66769000	36857000	29912000	9244	3675	8745	57083;57084;57085;57086;57087	77121;77122;77123;77124;77125;77126	77123			6	
DSLIFLVDASK	1	Unmodified	1206.6496	0.64960415	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.51	4	7	2				1	3		4	4	5	4	87.545	84.579	2	5.6015E-07	75059	160511_QHF_FH_JSI12i_2	113.93	94.655			0.96108	1.0711	51.69	17	13	Median	1.0833	0.91161	55.91	4	3	Median	0.88998	1.0367	50.005	4	2	Median	1.2635	1.2644	42.606	5	5	Median	0.80656	0.8591	71.185	4	3	Median	1718800000	870640000	848150000	405980000	212900000	193080000	217800000	105180000	112620000	568580000	280200000	288380000	526440000	272370000	254070000	9245	1023	8746	57088;57089;57090;57091;57092;57093;57094;57095;57096;57097;57098;57099;57100;57101;57102;57103;57104	77127;77128;77129;77130;77131;77132;77133;77134;77135;77136;77137;77138;77139;77140;77141;77142;77143;77144;77145;77146;77147;77148;77149;77150;77151	77129			25	
DSLIIIDELGR	0	Unmodified	1242.682	0.68196691	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	3	3					3			1	2	2	4	90.01	88.14	2	4.0594E-09	39795	160513_QHF_FH_JSI10Kac_4	119.68	82.987			0.90226	0.89454	19.583	7	1	Median	0.81626	0.68118	NaN	1	0	Median	0.96998	1.1443	9.2408	2	1	Median	0.86098	0.83822	4.1965	2	0	Median	0.91468	0.96731	11.06	2	0	Median	223770000	118780000	104990000	26514000	15200000	11314000	61843000	33972000	27870000	66256000	27799000	38457000	69155000	41807000	27349000	9246	1557	8747	57105;57106;57107;57108;57109;57110;57111;57112;57113	77152;77153;77154;77155;77156;77157;77158;77159;77160;77161;77162;77163	77156			10	
DSLINLKIQK	2	Acetyl (K)	1212.7078	0.70778773	3546	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		77.077	66.338	2	0.052051	35605	160513_QHF_FH_JSI11Kac_4	49.813	12.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	821830	821830	0	0	0	0	0	0	0	821830	821830	0	0	0	0	9247	3546	8748	57114	77164	77164			1	
DSLITPHVSR	0	Unmodified	1123.5986	0.59857163	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	3	3	32.314	31.53	2;3	0.011428	26663	160511_QHF_FH_JSI12i_2	46.462	27.368			0.99193	0.95938	32.188	7	1	Median	1.0795	0.95938	NaN	1	0	Median	0.5169	0.63931	NaN	1	1	Median	0.79689	0.79829	5.5445	2	0	Median	1.0721	1.1509	24.827	3	0	Median	305500000	155050000	150460000	36580000	19768000	16812000	66805000	40061000	26744000	105600000	50739000	54866000	96515000	44481000	52035000	9248	1685;31;191	8749	57115;57116;57117;57118;57119;57120;57121;57122	77165;77166;77167;77168;77169;77170;77171;77172	77166			7	
DSLLAHSSDPVEMR	0	Unmodified	1555.7301	0.73005609	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			49.304	48.349	3	0.043733	42677	160511_QHF_FH_JSI10i_2	28.956	18.472			0.34504	0.41292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34504	0.41292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26422000	19483000	6938500	0	0	0	26422000	19483000	6938500	0	0	0	0	0	0	9249	971	8750	57123	77173	77173			1	
DSLLEPALASVVIHK	1	Unmodified	1590.8981	0.8981077	3123	Q6PIW4	FIGNL1	Fidgetin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	90.435	89.741	3	0.00025446	77471	160511_QHF_FH_JSI12i_2	77.776	72.697			1.5161	1.5348	2.4282	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6022	1.5614	NaN	1	1	Median	1.4347	1.5087	NaN	1	1	Median	13429000	4523400	8905800	0	0	0	0	0	0	6129800	2069100	4060800	7299400	2454300	4845100	9250	3123	8751	57124;57125;57126;57127	77174;77175;77176;77177	77174			4	
DSLLGDK	1	Unmodified	746.38103	0.38103386	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	24.053	18.903	2	0.009356	19395	160511_QHF_FH_JSI10i_1	69.198	2.2046			1.2809	1.1816	66.693	7	4	Median	2.3936	1.9408	76.073	2	1	Median	0.51298	0.61405	NaN	1	1	Median	0.80742	0.78367	58.077	2	1	Median	1.7284	1.8324	36.312	2	1	Median	638850000	291350000	347500000	160510000	49285000	111230000	129090000	63555000	65537000	159220000	89408000	69807000	190030000	89103000	100930000	9251	1411	8752	57128;57129;57130;57131;57132;57133;57134;57135	77178;77179;77180;77181;77182;77183;77184	77182			7	
DSLLQDGEFSMDLR	0	Oxidation (M)	1640.7352	0.73520105	876	P07737	PFN1	Profilin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27	4					2	3			1	2	1	5	74.83	69.845	2	3.2283E-21	64964	160511_QHF_FH_JSI12i_1	174.9	132.57			1.0549	1.0489	30.191	8	2	Median	1.1493	0.92583	NaN	1	0	Median	0.82669	0.97413	8.3367	2	0	Median	1.1184	1.0724	NaN	1	0	Median	1.2289	1.3412	39.227	4	2	Median	1307200000	678690000	628530000	238390000	112710000	125680000	365310000	197740000	167570000	329580000	172490000	157090000	373940000	195740000	178190000	9252	876	8753	57136;57137;57138;57139;57140;57141;57142;57143;57144	77185;77186;77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197;77198	77188		423	14	
DSLLQDGEFSMDLR	0	Unmodified	1624.7403	0.74028642	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.13	0.337	20	3								6	6	3	8	87.096	86.618	2;3	4.9887E-98	77910	160511_QHF_FH_JSI11i_1	256.63	226.07			1.0325	1.0008	23.125	20	8	Median	1.1016	0.9211	27.555	5	2	Plateau	0.87047	1.0551	23.6	5	1	Median	0.93945	0.91066	16.561	3	0	Plateau	0.90056	0.95856	25.89	7	5	Median	4879700000	2381900000	2497800000	655660000	309910000	345750000	1811100000	1006200000	804910000	971090000	416790000	554300000	1441900000	649090000	792820000	9253	876	8753	57145;57146;57147;57148;57149;57150;57151;57152;57153;57154;57155;57156;57157;57158;57159;57160;57161;57162;57163;57164;57165;57166;57167	77199;77200;77201;77202;77203;77204;77205;77206;77207;77208;77209;77210;77211;77212;77213;77214;77215;77216;77217;77218;77219;77220;77221;77222;77223;77224;77225;77226;77227;77228;77229;77230;77231;77232;77233;77234;77235;77236;77237;77238;77239;77240;77241;77242;77243;77244;77245;77246;77247;77248;77249;77250;77251	77200			52	
DSLLTHIQNLK	1	Unmodified	1280.7089	0.70885036	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	64.606	64.016	2;3	2.5713E-05	56382	160511_QHF_FH_JSI9i_2	73.655	65.558			0.96378	0.95943	24.835	11	3	Median	1.0199	0.87547	8.8645	2	1	Median	0.70589	0.87767	12.596	2	0	Median	0.87858	0.8989	30.435	4	1	Median	1.1006	1.1093	18.712	3	1	Plateau	553100000	294370000	258730000	65284000	37469000	27815000	97809000	59327000	38482000	234500000	121420000	113070000	155510000	76148000	79362000	9254	5666	8754	57168;57169;57170;57171;57172;57173;57174;57175;57176;57177;57178	77252;77253;77254;77255;77256;77257;77258;77259;77260;77261;77262;77263	77255			11	
DSLMQPVRK	1	Unmodified	1072.5699	0.56991404	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								2		1	21.999	21.571	2	0.0063306	17740	160511_QHF_FH_JSI12i_3	70.69	43.203			0.57417	0.64401	66.038	2	2	Median	NaN	NaN	NaN	0	0	Median	0.83065	1.0273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39689	0.40373	NaN	1	1	Median	53595000	37513000	16082000	0	0	0	19814000	15086000	4728800	0	0	0	33780000	22427000	11353000	9255	5432	8755	57179;57180;57181	77264;77265;77266	77266			3	
DSLPPSPLLFPGK	1	Unmodified	1366.7497	0.74965254	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	83.219	82.723	2	0.0012527	75235	160511_QHF_FH_JSI12i_1	61.353	49.863			1.099	1.0696	12.332	2	1	Median	1.3672	1.1671	NaN	1	0	Median	0.88351	0.98029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48082000	22844000	25238000	28323000	14432000	13890000	19759000	8411300	11348000	0	0	0	0	0	0	9256	3588	8756	57182;57183;57184	77267;77268;77269	77267			2	
DSLQELSTEQK	1	Unmodified	1276.6147	0.61467521	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.93	33.688	2	1.9626E-05	30190	160511_QHF_FH_JSI11i_1	132.32	108.33			0.72468	0.7091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72468	0.7091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83887000	54086000	29801000	0	0	0	0	0	0	83887000	54086000	29801000	0	0	0	9257	4284	8757	57185	77270	77270			1	
DSLRDESQR	0	Unmodified	1104.516	0.51596421	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		7.0492	6.6857	2	0.055743	4363	160511_QHF_FH_JSI11i_2	52.591	34.188			1.0258	1.0114	16.692	3	0	Median	1.4161	1.2432	NaN	1	0	Median	0.73036	0.89334	NaN	1	0	Median	1.0258	1.0114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118990000	57807000	61180000	33286000	14086000	19200000	38571000	22060000	16511000	47130000	21661000	25470000	0	0	0	9258	4176	8758	57186;57187;57188	77271	77271			1	
DSLRPEAAR	0	Unmodified	1013.5254	0.52540669	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		10.34	10.139	3	0.056326	7673	160511_QHF_FH_JSI11i_2	29.551	10.074			0.73766	0.74219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73766	0.74219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	234860000	136630000	98226000	0	0	0	0	0	0	234860000	136630000	98226000	0	0	0	9259	1787	8759	57189	77272	77272			1	
DSLSDDGVDLK	1	Unmodified	1162.5354	0.53536225	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			41.662	41.26	2	8.8349E-05	37039	160511_QHF_FH_JSI10i_1	94.409	86.174			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9260	885	8760	57190	77273	77273			1	
DSLSDDVVK	1	Unmodified	976.47131	0.47130543	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	31.72	31.118	2	6.3227E-05	27738	160511_QHF_FH_JSI10i_1	99.139	69.801			1.493	1.2972	34.088	4	2	Linear	1.6254	1.2985	NaN	1	0	Median	2.0589	2.4858	NaN	1	1	Median	2.9255	2.8303	NaN	1	1	Median	2.013	2.1079	NaN	1	0	Median	1571600000	439640000	1132000000	249680000	118780000	130900000	619230000	137660000	481570000	546980000	118320000	428650000	155740000	64882000	90858000	9261	3175	8761	57191;57192;57193;57194;57195	77274;77275;77276;77277;77278;77279	77277			6	
DSLSMAAR	0	Unmodified	849.40145	0.40145173	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	20.217	19.626	2	0.0032118	16583	160511_QHF_FH_JSI9i_1	74.255	29.724			0.79322	0.76574	12.218	3	0	Plateau	1.1679	0.95739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79322	0.75516	NaN	1	0	Median	0.77773	0.80834	NaN	1	0	Median	445120000	248270000	196850000	138450000	72812000	65641000	0	0	0	154750000	88515000	66237000	151910000	86941000	64972000	9262	241	8762	57196;57197;57198	77280;77281	77281			2	
DSLSPVLHPSDLILTR	0	Unmodified	1761.9625	0.96249887	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	83.09	82.373	2;3	6.1815E-06	72544	160511_QHF_FH_JSI11i_2	106.6	85.177			1.437	1.447	8.0259	5	1	Median	1.6241	1.4027	6.164	2	1	Median	1.0588	1.2873	NaN	1	0	Median	1.3851	1.447	NaN	1	0	Median	1.437	1.5821	NaN	1	0	Median	155130000	63470000	91662000	35280000	11618000	23662000	36673000	17172000	19500000	37372000	15822000	21549000	45807000	18857000	26950000	9263	4861	8763	57199;57200;57201;57202;57203	77282;77283;77284;77285;77286;77287	77286			6	
DSLSVNEFK	1	Unmodified	1037.5029	0.50293991	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	48.197	45.076	2	3.3036E-32	40543	160511_QHF_FH_JSI11i_1	210.1	173.7			0.94225	0.91448	26.962	7	2	Median	1.0681	0.88433	NaN	1	0	Median	0.8571	1.0153	64.341	2	2	Median	0.97537	0.95813	6.5948	2	0	Median	0.88056	0.95301	6.8807	2	0	Median	3709000000	2066000000	1643000000	520570000	265660000	254900000	1519300000	823150000	696180000	813810000	464770000	349040000	855310000	512440000	342860000	9264	4289	8764	57204;57205;57206;57207;57208;57209;57210;57211	77288;77289;77290;77291;77292;77293;77294;77295;77296;77297;77298;77299;77300;77301;77302;77303;77304;77305	77289			18	
DSLTDLYVQHAIPLPQR	0	Unmodified	1965.032	0.031975416	4468	Q9BVC5	C2orf49	Ashwin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		85.022	84.41	2	4.9142E-07	74222	160511_QHF_FH_JSI11i_2	91.855	68.25			2.4475	3.1385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4475	3.1385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13119000	1455900	11663000	0	0	0	13119000	1455900	11663000	0	0	0	0	0	0	9265	4468	8765	57212;57213	77306;77307	77306			2	
DSLTLVFVETK	1	Unmodified	1250.6758	0.6758189	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	82.653	82.155	2	4.1644E-13	74684	160511_QHF_FH_JSI10i_1	148.32	120.15			1.0504	0.97717	26.991	5	2	Median	0.85335	0.70969	NaN	1	0	Median	0.6793	0.80384	NaN	1	0	Median	1.1619	1.1175	18.981	2	1	Median	1.2422	1.2947	NaN	1	1	Median	307230000	164980000	142250000	36247000	15851000	20396000	94112000	58696000	35415000	101490000	49860000	51630000	75385000	40576000	34809000	9266	154	8766	57214;57215;57216;57217;57218;57219	77308;77309;77310;77311;77312;77313;77314;77315;77316	77314			9	
DSLTLVFVETKK	2	Unmodified	1378.7708	0.77078192	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.55		6	2					6	3	3	5	3	6	73.887	68.169	2;3	2.8943E-05	59716	160511_QHF_FH_JSI12i_2	86.288	78.743			0.97074	1.011	31.117	15	4	Median	0.85618	0.74101	21.529	3	0	Plateau	0.93189	1.1329	27.154	4	2	Median	1.1836	1.1741	21.847	3	0	Median	0.9003	0.97859	38.055	5	2	Median	333960000	167900000	166060000	76172000	46162000	30010000	66049000	32128000	33921000	85580000	35456000	50123000	106160000	54150000	52006000	9267	154	8767	57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236	77317;77318;77319;77320;77321;77322;77323;77324;77325;77326;77327;77328;77329;77330;77331;77332;77333;77334;77335;77336;77337	77317			20	
DSLVDIIGICK	1	Unmodified	1231.6482	0.64822394	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	88.931	88.519	2	9.9788E-10	80606	160511_QHF_FH_JSI12i_1	136.57	115.94			1.0471	1.0503	46.539	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80141	0.75575	NaN	1	0	Median	1.3681	1.4595	NaN	1	0	Median	45916000	21098000	24818000	0	0	0	0	0	0	23598000	12514000	11084000	22318000	8583600	13734000	9268	1293	8768	57237;57238;57239	77338;77339;77340;77341;77342	77341			5	
DSLVLLGR	0	Unmodified	871.51272	0.51271674	600	O76071	CIAO1	Probable cytosolic iron-sulfur protein assembly protein CIAO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.34	3	4					6	2		2	5	4	4	62.491	57.552	2	0.00055326	49486	160511_QHF_FH_JSI12i_2	104.45	46.984			1.0588	1.021	75.306	12	4	Median	1.077	0.89716	8.8736	2	0	Median	0.72244	0.84511	41.561	3	1	Median	1.1062	1.1057	98.683	4	1	Median	1.113	1.2331	91.934	3	2	Median	436720000	230120000	206600000	54984000	29642000	25343000	110900000	64288000	46610000	151810000	88279000	63528000	119030000	47910000	71119000	9269	600	8769	57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253;57254	77343;77344;77345;77346;77347;77348;77349;77350;77351;77352;77353;77354;77355;77356;77357;77358;77359	77345			17	
DSLVTLK	1	Unmodified	774.44872	0.4487195	2711	Q15811	ITSN1	Intersectin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.787	37.093	2	0.027977	32756	160511_QHF_FH_JSI9i_1	55.676	24.387		+	0.8946	0.90158	39.842	3	1	Plateau	2.1982	1.7988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0144	0.99944	NaN	1	0	Median	0.82397	0.84133	NaN	1	0	Median	73550000	33557000	39994000	17007000	6048800	10958000	0	0	0	27668000	13839000	13829000	28875000	13669000	15207000	9270	2711	8770	57255;57256;57257	77360;77361;77362	77362			3	
DSLVYQYLQK	1	Unmodified	1255.6449	0.64485312	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		67.082	66.381	2	1.1357E-05	58890	160511_QHF_FH_JSI10i_2	114.28	103.45			0.35869	0.40182	33.111	2	2	Median	NaN	NaN	NaN	0	0	Median	0.26006	0.31794	NaN	1	1	Median	0.49474	0.50782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41498000	31406000	10093000	0	0	0	20227000	18035000	2191900	21271000	13370000	7900800	0	0	0	9271	3588	8771	57258;57259	77363;77364	77364			2	
DSLYAQGK	1	Unmodified	880.42905	0.42904669	2122	P83881	RPL36A	60S ribosomal protein L36a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.44	4	4	1		3	4				4	5	3	4	16.354	12.208	2	1.0458E-06	11624	160511_QHF_FH_JSI12i_1	154.09	125.99			0.95897	0.972	56.621	16	13	Median	1.5974	1.3167	43.57	4	4	Median	0.7887	0.94052	82.356	5	4	Median	0.95255	0.94498	12.729	3	2	Median	0.95465	1.0322	27.585	4	3	Linear	7162100000	3181900000	3980100000	1547900000	751920000	795980000	2108900000	909060000	1199900000	1770200000	686790000	1083400000	1735000000	834170000	900870000	9272	2122	8772	57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274;57275	77365;77366;77367;77368;77369;77370;77371;77372;77373;77374;77375;77376;77377;77378;77379;77380;77381;77382;77383	77367			19	
DSLYAQGR	0	Unmodified	908.43519	0.4351947	3945	Q969Q0	RPL36AL	60S ribosomal protein L36a-like	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	1	3	2	16.09	13.285	2	2.8063E-05	11772	160511_QHF_FH_JSI12i_1	138.37	97.681			0.75729	0.85286	30.316	6	3	Median	1.2649	1.0286	NaN	1	0	Median	0.77275	0.91595	NaN	1	1	Median	0.53983	0.533	34.706	3	2	Median	0.74213	0.79411	NaN	1	0	Median	1766700000	886550000	880120000	429710000	172470000	257240000	480130000	288130000	192000000	490070000	237480000	252590000	366760000	188470000	178290000	9273	3945	8773	57276;57277;57278;57279;57280;57281;57282	77384;77385;77386;77387;77388;77389	77386			6	
DSMIENMK	1	Unmodified	966.41505	0.41505288	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	31.212	30.611	2	0.0019964	27230	160511_QHF_FH_JSI11i_1	93.561	59.918			2.41	2.5847	59.2	4	4	Median	4.8718	4.0318	NaN	1	1	Median	1.4669	1.7341	NaN	1	1	Median	3.9596	3.8525	NaN	1	1	Median	1.1776	1.2246	NaN	1	1	Median	495310000	169140000	326180000	79939000	13401000	66539000	173200000	74047000	99155000	74602000	18170000	56433000	167570000	63518000	104050000	9274	446	8774	57283;57284;57285;57286;57287	77390;77391;77392;77393;77394	77390			5	
DSNFAGDLVR	0	Unmodified	1092.52	0.51998696	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.064	49.386	2	7.0947E-05	44494	160511_QHF_FH_JSI10i_1	89.029	74.872			1.0285	1.0212	4.0016	4	0	Median	1.2091	0.99291	NaN	1	0	Median	0.90575	1.0504	NaN	1	0	Median	1.1034	1.0718	NaN	1	0	Median	0.95868	0.99004	NaN	1	0	Median	410280000	206930000	203350000	108120000	54484000	53639000	103100000	57548000	45557000	96565000	43363000	53203000	102490000	51538000	50950000	9275	3377	8775	57288;57289;57290;57291	77395;77396;77397;77398;77399;77400;77401	77398			7	
DSNGAILVYDITDEDSFQK	1	Unmodified	2128.9801	0.980059	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	90.968	90.622	2	2.773E-19	82559	160511_QHF_FH_JSI11i_1	169.04	156.68			1.2339	1.4023	21.3	5	3	Median	1.2883	1.0493	NaN	1	1	Median	1.223	1.4065	0.42346	2	2	Median	1.5737	1.5019	NaN	1	0	Median	0.89735	0.92619	NaN	1	0	Median	130840000	56013000	74823000	14279000	4171700	10107000	65886000	26624000	39262000	21585000	10683000	10902000	29086000	14534000	14552000	9276	5388	8776	57292;57293;57294;57295;57296;57297;57298;57299	77402;77403;77404;77405;77406;77407;77408;77409;77410;77411;77412;77413	77403			12	
DSNLHSSTDK	1	Unmodified	1102.4891	0.48908076	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.339	4.763	2	0.023962	2599	160511_QHF_FH_JSI9i_1	41.08	15.083			1.0657	0.87228	NaN	1	0	Median	1.0657	0.87228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74490000	40159000	34332000	74490000	40159000	34332000	0	0	0	0	0	0	0	0	0	9277	3419	8777	57300	77414	77414			1	
DSNNLCLHFNPR	0	Unmodified	1485.6783	0.67829529	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		8	4					2		2	2	5	5	48.749	46.618	2;3	3.7772E-24	40151	160511_QHF_FH_JSI11i_2	220.82	187.59			1.1068	1.1193	19.493	14	4	Median	1.22	1.0289	4.7605	2	1	Median	0.94851	1.1574	23.388	2	1	Median	0.96746	0.9517	14.872	5	1	Median	1.1815	1.3271	11.97	5	1	Median	3792800000	1901600000	1891200000	289860000	129630000	160230000	559050000	325810000	233240000	1643800000	902700000	741060000	1300100000	543430000	756680000	9278	926	8778	57301;57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312;57313;57314	77415;77416;77417;77418;77419;77420;77421;77422;77423;77424;77425;77426;77427;77428;77429;77430;77431;77432;77433	77425			19	
DSNSLAYYNMANGAVIHLALK	1	Unmodified	2264.126	0.12595216	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.8	5.6		4							1	1	2		2	94.072	92.464	3	7.7654E-10	82958	160511_QHF_FH_JSI12i_2	108.92	100.1			1.0442	0.90519	18.942	3	2	Plateau	1.0442	0.90519	NaN	1	0	Median	0.59737	0.70646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95116	1.0249	NaN	1	1	Median	79765000	52142000	27623000	14484000	6574800	7909500	40708000	34062000	6645900	0	0	0	24573000	11506000	13067000	9279	2676	8779	57315;57316;57317;57318;57319	77434;77435;77436;77437;77438;77439	77434			5	
DSNTDILLVGAPMYMGTEK	1	Unmodified	2053.97	0.97002836	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	97.6	97.431	2	2.1987E-08	88206	160511_QHF_FH_JSI10i_1	112.15	79.656			0.90753	1.0584	56.029	3	1	Median	0.61734	0.49972	NaN	1	0	Median	0.90753	1.0584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4988	1.4951	NaN	1	1	Median	46830000	18473000	28357000	13457000	6499700	6957300	16932000	7850900	9081500	0	0	0	16441000	4122900	12318000	9280	1873	8780	57320;57321;57322	77440;77441;77442;77443;77444;77445	77443			6	
DSNTDVGAK	1	Unmodified	905.40904	0.40903953	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					1	3	2	2	5.9276	2.6517	2	4.5725E-06	3523	160511_QHF_FH_JSI10i_1	133.86	71.145			0.83725	0.80662	25.489	7	2	Median	1.5263	1.2526	NaN	1	1	Median	0.78069	0.91406	23.218	2	1	Median	0.74359	0.71877	16.307	2	0	Median	0.9117	0.96412	29.88	2	0	Median	686370000	353060000	333310000	67531000	27204000	40326000	191330000	105140000	86187000	173320000	98625000	74691000	254200000	122090000	132110000	9281	4982	8781	57323;57324;57325;57326;57327;57328;57329;57330	77446;77447;77448;77449;77450;77451;77452;77453;77454	77450			9	
DSNTILLPSNPGDVTSMVAQAMGVYGALTK	1	Unmodified	3049.51	0.51002248	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	103.4	103.31	3	1.1503E-12	93891	160511_QHF_FH_JSI12i_1	76.573	70.67			1.2662	1.3289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2662	1.3289	NaN	1	0	Median	95223000	45817000	49407000	0	0	0	0	0	0	46461000	27785000	18676000	48762000	18032000	30730000	9282	5357	8782	57331;57332	77455;77456	77456			2	
DSPCQLEALK	1	Unmodified	1159.5543	0.55432356	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.309	41.66	2	8.213E-06	37545	160511_QHF_FH_JSI11i_1	116.05	100.41			0.82017	0.88843	71.073	4	3	Median	0.7573	0.6281	NaN	1	1	Median	0.85487	1.0158	NaN	1	1	Median	0.78688	0.777	NaN	1	1	Median	2.8968	3.102	NaN	1	0	Median	493660000	256090000	237580000	76664000	39052000	37612000	132920000	75693000	57223000	176940000	106490000	70452000	107140000	34852000	72290000	9283	1029	8783	57333;57334;57335;57336	77457;77458;77459;77460	77457			3	
DSPDEFPVYVGINEAK	1	Unmodified	1778.8363	0.8362953	5080	Q9NWY4	C4orf27	UPF0609 protein C4orf27	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		79.184	78.933	2	0.014302	71596	160511_QHF_FH_JSI10i_1	50.207	37.007			0.96297	1.0176	4.298	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90164	1.049	NaN	1	1	Median	1.0285	0.98717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34768000	12673000	22095000	0	0	0	14534000	6932500	7601700	20234000	5740500	14494000	0	0	0	9284	5080	8784	57337;57338	77461;77462	77462			2	
DSPFGLSFVR	0	Unmodified	1123.5662	0.56620887	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	1	3	2	81.805	81.245	2	7.6091E-05	70042	160511_QHF_FH_JSI12i_2	99.136	76.644			0.93863	0.94274	31.729	5	1	Median	1.1126	0.94274	NaN	1	0	Median	0.86858	1.0808	NaN	1	0	Median	0.85468	0.84251	11.099	2	1	Median	1.7947	1.7841	NaN	1	0	Median	166560000	86883000	79681000	34472000	14398000	20074000	29924000	17722000	12202000	91833000	50296000	41537000	10335000	4467200	5867700	9285	1150	8785	57339;57340;57341;57342;57343;57344;57345	77463;77464;77465;77466;77467;77468;77469;77470	77465			8	
DSPFKPK	2	Acetyl (K)	859.44397	0.44396847	2651	Q15291	RBBP5	Retinoblastoma-binding protein 5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	1.11					3	4	2	3		1	4	3	4	36.635	26.708	2	0.012077	6673	160513_QHF_FH_JSI9Kac_3	88.029	20.994			0.90527	0.99507	12.709	12	0	Median	1.3981	1.3098	NaN	1	0	Median	0.80328	0.92124	5.4339	4	0	Median	1.1229	1.0142	3.7445	3	0	Plateau	0.88385	0.95605	12.447	4	0	Median	3431500000	1619000000	1812600000	1510700000	627960000	882770000	639150000	326610000	312530000	474100000	240580000	233520000	807560000	423820000	383740000	9286	2651	8786	57346;57347;57348;57349;57350;57351;57352;57353;57354;57355;57356;57357	77471;77472;77473;77474;77475;77476;77477;77478;77479;77480;77481;77482;77483	77474	2614		13	
DSPHMQDPNQADEEAMTQIIR	0	Unmodified	2425.0638	0.063822183	1233	P23511	NFYA	Nuclear transcription factor Y subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.541	64.926	3	1.6645E-09	59040	160511_QHF_FH_JSI12i_1	99.407	96.008			1.1649	1.1955	8.3385	4	1	Linear	1.3027	1.065	NaN	1	0	Median	0.84584	1.0064	NaN	1	1	Median	1.157	1.1424	NaN	1	0	Median	1.1729	1.2191	NaN	1	0	Median	325560000	152130000	173430000	52883000	21209000	31674000	76314000	38960000	37355000	93224000	46059000	47166000	103140000	45905000	57234000	9287	1233	8787	57358;57359;57360;57361	77484;77485;77486;77487;77488;77489;77490;77491	77487			8	
DSPIAGFLQK	1	Unmodified	1074.571	0.5709599	4196	Q96PE7	MCEE	Methylmalonyl-CoA epimerase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	71.072	70.487	2	0.025305	64232	160511_QHF_FH_JSI12i_1	42.287	18.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9288	4196	8788	57362	77492	77492			1	
DSPIAGFLQKNK	2	Acetyl (K)	1358.7194	0.71941505	4196	Q96PE7	MCEE	Methylmalonyl-CoA epimerase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	80.824	70.248	2	7.0174E-05	37223	160513_QHF_FH_JSI11Kac_4	91.584	73.272			1.0551	1.2404	45.734	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0551	1.2806	NaN	1	0	Median	0.52935	0.53388	NaN	1	0	Median	0.95876	1.0418	NaN	1	0	Median	10922000	5983300	4939200	0	0	0	4623700	2424800	2198900	2197500	1566100	631370	4101200	1992300	2108900	9289	4196	8789	57363;57364;57365	77493;77494;77495	77494	3074		3	
DSPLETK	1	Unmodified	788.3916	0.39159855	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	4.41	1				1	4					2	2	2	18.795	12.753	2	0.023549	8180	160513_QHF_FH_JSI10Kac_3	67.032	35.743			0.69548	0.80454	89.29	6	4	Median	NaN	NaN	NaN	0	0	Median	0.69548	0.80454	16.412	2	0	Median	0.70022	0.68241	176.82	2	2	Median	0.73383	0.80297	89.279	2	2	Median	2182000000	2003500000	178530000	0	0	0	8704300	4692100	4012300	2159200000	1991000000	168280000	14101000	7861200	6240000	9290	2094	8790	57366;57367;57368;57369;57370;57371	77496;77497;77498;77499;77500	77500			5	
DSPLETKMAVLALLAK	2	Acetyl (K)	1740.9696	0.96955808	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		100.7	91.277	2	1.1142E-74	52411	160513_QHF_FH_JSI11Kac_6	225.33	206.71			0.35882	0.34915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35882	0.34915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97926000	71197000	26729000	0	0	0	0	0	0	97926000	71197000	26729000	0	0	0	9291	2094	8791	57372	77501	77501	2184		1	
DSPLLLQQISAMR	0	Unmodified	1470.7864	0.78644876	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	3	1	2	90.819	90.318	2	1.5887E-05	80123	160511_QHF_FH_JSI10i_2	134.75	107.01			1.4786	1.5333	28.844	8	5	Median	1.9594	1.6335	24.49	2	1	Median	1.2519	1.4736	40.653	3	2	Median	1.1342	1.1422	NaN	1	0	Median	1.611	1.7359	11.936	2	2	Median	301010000	131470000	169540000	56512000	20862000	35650000	111370000	57977000	53389000	72032000	26779000	45253000	61096000	25849000	35248000	9292	2516	8792	57373;57374;57375;57376;57377;57378;57379;57380	77502;77503;77504;77505;77506;77507;77508;77509;77510	77509			9	
DSPLQGSGQQNSQAGQR	0	Unmodified	1756.8089	0.80885177	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.78	15.336	2	8.2218E-11	13034	160511_QHF_FH_JSI12i_1	104.24	80.495			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9293	733	8793	57381	77511	77511			1	
DSPSVWAAVPGK	1	Unmodified	1212.6139	0.61388734	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.18	12	4	4		2	6	4	5	1	7	10	9	12	62.88	58.002	1;2;3	2.0654E-31	31856	160513_QHF_FH_JSI11Kac_4	186.78	175.19			0.99632	1.012	26.927	36	6	Median	1.2497	1.0088	25.105	7	0	Median	0.90273	1.0749	31.787	10	3	Median	1.012	0.98361	30.438	9	1	Median	0.95294	1.0075	20.448	10	2	Median	43609000000	18178000000	25431000000	8938700000	3109400000	5829300000	10615000000	4526400000	6088800000	12008000000	5313500000	6694800000	12047000000	5228500000	6818400000	9294	876	8794	57382;57383;57384;57385;57386;57387;57388;57389;57390;57391;57392;57393;57394;57395;57396;57397;57398;57399;57400;57401;57402;57403;57404;57405;57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419	77512;77513;77514;77515;77516;77517;77518;77519;77520;77521;77522;77523;77524;77525;77526;77527;77528;77529;77530;77531;77532;77533;77534;77535;77536;77537;77538;77539;77540;77541;77542;77543;77544;77545;77546;77547;77548;77549;77550;77551;77552;77553;77554;77555;77556;77557;77558;77559;77560;77561;77562;77563;77564;77565;77566;77567;77568;77569;77570;77571;77572;77573;77574;77575;77576;77577;77578;77579;77580;77581;77582;77583;77584;77585;77586;77587;77588;77589;77590	77549			78	
DSPTLSNSGIR	0	Unmodified	1145.5677	0.56766543	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	1					1					1	1		29.496	29.172	2	0.00063657	25892	160511_QHF_FH_JSI10i_1	83.358	60.972			1.1264	1.3347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1264	1.3347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94890000	43120000	51771000	0	0	0	94890000	43120000	51771000	0	0	0	0	0	0	9295	4868	8795	57420;57421	77591;77592	77592			2	
DSPTQEREELFIQK	1	Unmodified	1718.8475	0.84752869	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	46.561	45.692	3	8.114E-05	39322	160511_QHF_FH_JSI11i_2	105.14	93.163			1.0387	1.0821	13.022	5	3	Median	1.5541	1.3683	NaN	1	0	Median	0.89599	1.0764	0.75792	2	1	Median	1.0387	1.0491	NaN	1	1	Median	1.187	1.3354	NaN	1	1	Median	687750000	318590000	369160000	128170000	48306000	79868000	225190000	115800000	109390000	196080000	92713000	103360000	138310000	61765000	76542000	9296	2570	8796	57422;57423;57424;57425;57426	77593;77594;77595;77596	77595			4	
DSPYMAFIHPATGGYNPDLVR	0	Unmodified	2320.0947	0.094652027	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.514	1	8	2							2	2	3	4	86.879	86.347	2;3	5.658E-18	75956	160511_QHF_FH_JSI9i_2	120.23	112.53			0.91954	0.99198	33.061	11	8	Median	0.99544	0.86123	6.4782	2	2	Median	0.90842	1.1414	0.31857	2	1	Median	0.81904	0.82319	22.349	3	2	Median	0.96424	1.0705	54.666	4	3	Median	937570000	505740000	431830000	198990000	127440000	71551000	228670000	125820000	102850000	288610000	156160000	132440000	221300000	96317000	124990000	9297	512	8797	57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437	77597;77598;77599;77600;77601;77602;77603;77604;77605;77606;77607;77608	77600			12	
DSQDAGGFGPEDR	0	Unmodified	1349.5484	0.54838655	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.636	23.092	2	5.1538E-31	20192	160511_QHF_FH_JSI11i_1	193.96	174.69			1.198	1.1753	10.148	4	0	Median	1.3358	1.1347	NaN	1	0	Median	1.0456	1.2173	NaN	1	0	Median	1.4847	1.3951	NaN	1	0	Median	1.0744	1.1165	NaN	1	0	Median	287470000	134130000	153350000	65059000	26961000	38098000	69070000	35815000	33255000	63557000	28870000	34687000	89788000	42481000	47307000	9298	2636	8798	57438;57439;57440;57441;57442	77609;77610;77611;77612;77613;77614;77615;77616;77617	77610			9	
DSQDASAEQSDHDDEVASLASASGGFGTK	1	Unmodified	2881.2122	0.2121968	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.409	59.016	3	2.4459E-06	53332	160511_QHF_FH_JSI10i_1	54.324	51.401			0.82548	0.95386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82548	0.95386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17219000	13145000	4074100	0	0	0	17219000	13145000	4074100	0	0	0	0	0	0	9299	3100	8799	57443	77618;77619	77618			2	
DSQDGSSYR	0	Unmodified	1013.405	0.40501678	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	2	2	5.7127	3.0851	2	1.5335E-05	3327	160511_QHF_FH_JSI12i_1	109.11	99.522			0.92209	1.0251	23.388	6	0	Median	1.247	1.0367	NaN	1	0	Median	0.87533	1.0715	NaN	1	0	Median	0.96284	0.93958	13.608	2	0	Median	0.72441	0.77	39.183	2	0	Median	1000400000	517670000	482780000	87536000	43687000	43849000	282140000	151580000	130560000	310830000	154680000	156150000	319940000	167730000	152210000	9300	2579	8800	57444;57445;57446;57447;57448;57449;57450	77620;77621;77622;77623;77624;77625;77626;77627;77628;77629	77623			10	
DSQFNMAEGFR	0	Unmodified	1300.5506	0.55063516	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.693	55.035	2	0.00015918	50002	160511_QHF_FH_JSI12i_1	93.325	79.555			0.97029	0.98255	12.398	4	1	Median	1.0548	0.87728	NaN	1	0	Median	0.88964	1.0356	NaN	1	0	Median	1.2156	1.1633	NaN	1	0	Median	0.89257	0.93218	NaN	1	1	Median	160630000	76133000	84498000	36249000	15872000	20378000	39648000	23390000	16258000	46599000	15929000	30670000	38134000	20943000	17191000	9301	5734	8801	57451;57452;57453;57454	77630;77631;77632	77631			2	
DSQGELMVYPYYGEK	1	Unmodified	1777.7869	0.78690227	2219	Q04721	NOTCH2	Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.725	68.121	2	0.0018699	62065	160511_QHF_FH_JSI12i_1	59.116	46.903			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9302	2219	8802	57455	77633	77633			1	
DSQGENMFLR	0	Unmodified	1195.5292	0.52917144	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.281	44.609	2	3.3842E-14	39540	160511_QHF_FH_JSI9i_1	162.49	153.1			1.049	0.93081	17.077	4	0	Linear	1.7635	1.4491	NaN	1	0	Median	0.85123	0.98437	NaN	1	0	Median	1.0875	1.0663	NaN	1	0	Median	1.0117	1.0676	NaN	1	0	Median	670030000	329520000	340510000	139220000	49954000	89263000	202360000	102950000	99408000	186590000	100520000	86066000	141870000	76094000	65776000	9303	3503	8803	57456;57457;57458;57459	77634;77635;77636;77637;77638;77639	77639			6	
DSQIADILSTSGTVVTITIMPAFIFEHIIK	1	Unmodified	3259.7414	0.74140263	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									6	3	3			104.33	96.863	3;4	9.5969E-49	55006	160513_QHF_FH_JSI9Kac_6	155.58	144.27			0.99309	1.0056	22.444	6	4	Median	1.2747	1.1207	5.4213	3	2	Median	0.66495	0.79202	14.147	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	494290000	272030000	222270000	122480000	54405000	68072000	371820000	217620000	154190000	0	0	0	0	0	0	9304	151	8804	57460;57461;57462;57463;57464;57465	77640;77641;77642;77643;77644;77645;77646;77647	77640			8	
DSQICELK	1	Unmodified	991.46445	0.46444592	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		33.501	24.72	2	0.045488	14799	160513_QHF_FH_JSI11Kac_3	53.775	33.998			2.254	2.1341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.254	2.1341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2427300	726110	1701200	0	0	0	0	0	0	2427300	726110	1701200	0	0	0	9305	1849	8805	57466	77648	77648			1	
DSQICELKYDK	2	Acetyl (K)	1439.6602	0.66024519	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		58.777	49.171	2	0.032987	26101	160513_QHF_FH_JSI11Kac_3	52.79	34.926			0.1127	0.10722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1127	0.10722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2272100	1949500	322510	0	0	0	0	0	0	2272100	1949500	322510	0	0	0	9306	1849	8806	57467	77649	77649			1	
DSQLIVSSAK	1	Unmodified	1046.5608	0.56078914	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	34.072	31.26	2	0.0016852	27993	160511_QHF_FH_JSI10i_1	76.228	34.78			0.30901	0.29679	20.234	2	2	Median	0.31499	0.25723	NaN	1	1	Median	0.30315	0.34245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64271000	55409000	8862400	17818000	14420000	3397700	30726000	26510000	4216200	1248500	0	1248500	14479000	14479000	0	9307	3282	8807	57468;57469;57470;57471	77650;77651;77652;77653	77652			4	
DSQLQFEAISDEEK	1	Unmodified	1637.7421	0.74206056	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.108	58.384	2	4.065E-13	52872	160511_QHF_FH_JSI11i_1	125.82	86.552			1.86	1.9329	40.087	3	3	Plateau	1.1704	0.95949	NaN	1	1	Median	1.6309	1.9093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.86	1.9329	NaN	1	1	Median	135300000	53825000	81475000	34042000	16251000	17791000	42341000	16708000	25633000	0	0	0	58917000	20866000	38051000	9308	1670	8808	57472;57473;57474;57475	77654;77655;77656;77657	77654			4	
DSQLYAVDYETLTRPFSGR	0	Unmodified	2217.0702	0.070211415	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.4	0.49		3	2								2	2	1	88.154	87.855	3	1.1717E-06	78437	160511_QHF_FH_JSI11i_3	97.32	82.86			1.1736	1.1982	40.296	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1349	1.3637	NaN	1	0	Median	1.2151	1.1982	8.3262	2	0	Median	0.56594	0.56732	NaN	1	0	Median	314910000	142730000	172180000	0	0	0	74932000	42770000	32162000	151060000	63873000	87188000	88918000	36085000	52833000	9309	2113	8809	57476;57477;57478;57479;57480	77658;77659;77660;77661;77662	77659			5	
DSQMVVDSFK	1	Unmodified	1154.5278	0.52777445	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		51.41	50.734	2	0.00046237	45068	160511_QHF_FH_JSI9i_1	88.392	77.758			0.8906	0.8671	18.519	3	3	Median	1.182	0.99427	NaN	1	1	Median	0.61069	0.68919	NaN	1	1	Median	0.8906	0.8671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105590000	54465000	51122000	36540000	17554000	18986000	34419000	21270000	13148000	34629000	15641000	18988000	0	0	0	9310	2934	8810	57481;57482;57483	77663;77664;77665	77665			3	
DSQPSLDLASATSGDK	1	Unmodified	1590.7373	0.73730954	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.39	3				2					1	1	2	1	53.368	49.183	2	7.703E-07	43755	160511_QHF_FH_JSI9i_1	123.28	97.337			0.9403	1.0003	32.182	5	3	Median	1.2241	1.0003	NaN	1	1	Median	0.43443	0.51821	NaN	1	1	Median	0.96144	0.92898	30.513	2	1	Median	0.9403	1.0226	NaN	1	0	Median	441110000	261690000	179430000	101330000	44429000	56905000	187520000	129440000	58079000	150540000	87078000	63459000	1719700	736950	982770	9311	2902	8811	57484;57485;57486;57487;57488	77666;77667;77668;77669;77670;77671	77669			6	
DSQSPNTATQR	0	Unmodified	1203.548	0.54799262	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	5.39	2				3						2	1	2	6.1183	1.669	2	3.5315E-07	3538	160511_QHF_FH_JSI12i_1	118.91	105.87			0.87269	0.96345	26.331	5	1	Median	NaN	NaN	NaN	0	0	Median	0.64708	0.74223	29.385	2	1	Median	1.1846	1.143	NaN	1	0	Median	0.9897	1.0531	12.581	2	0	Median	106200000	56693000	49504000	0	0	0	44132000	33563000	10569000	1817700	859470	958270	60247000	22270000	37976000	9312	205	8812	57489;57490;57491;57492;57493	77672;77673;77674;77675;77676;77677;77678	77674			7	
DSQTQAILTK	1	Unmodified	1103.5823	0.58225287	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	31.716	27.924	2	8.1594E-09	24477	160511_QHF_FH_JSI9i_1	123.75	93.582			1.8099	1.8969	67.755	5	4	Median	NaN	NaN	NaN	0	0	Median	1.8099	2.1742	NaN	1	1	Median	1.9719	1.8969	75.031	3	3	Median	0.66245	0.66957	NaN	1	0	Median	387550000	196600000	190960000	0	0	0	126920000	59353000	67572000	129820000	57486000	72334000	130810000	79756000	51051000	9313	2349	8813	57494;57495;57496;57497;57498;57499;57500	77679;77680;77681;77682;77683;77684;77685	77684			6	
DSQVVQVVLDGLK	1	Unmodified	1398.7718	0.77184455	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	99.469	99.3	2	6.7711E-05	89979	160511_QHF_FH_JSI12i_1	114.76	102.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20834000	20834000	0	0	0	0	0	0	0	0	0	0	20834000	20834000	0	9314	147	8814	57501	77686	77686			1	
DSRALIEK	1	Unmodified	930.51345	0.51344502	5218	Q9P2L0	WDR35	WD repeat-containing protein 35	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.569	15.569	3	0.05544	12752	160511_QHF_FH_JSI11i_3	30.564	0.79666			0.37899	0.35077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37899	0.35077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114600000	76654000	37944000	0	0	0	0	0	0	114600000	76654000	37944000	0	0	0	9315	5218	8815	57502	77687	77687			1	
DSREHKSAFKEPSRDHNK	3	Unmodified	2167.0519	0.05187601	1538	P42568	MLLT3	Protein AF-9	yes	yes	0	0	0	4		By MS/MS			16	0									1		1			84.984	79.317	2	0.050838	44335	160513_QHF_FH_JSI10Kac_6	34.386	8.2616			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38395000	38395000	0	0	0	0	38395000	38395000	0	0	0	0	0	0	0	9316	1538	8816	57503	77688	77688			1	
DSRPSQAAGDNQGDEAK	1	Unmodified	1744.7612	0.76123288	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	7.4899	5.2659	2;3	9.8303E-16	4700	160511_QHF_FH_JSI12i_1	155.92	142.5			0.88264	0.9945	11.289	11	0	Median	1.134	0.93326	8.9876	2	0	Median	0.87988	1.0218	2.8699	3	0	Plateau	1.172	1.1524	7.5892	3	0	Plateau	0.83225	0.88011	5.3499	3	0	Plateau	2017300000	1041200000	976030000	508860000	256300000	252560000	572480000	313240000	259250000	379230000	180780000	198450000	556690000	290920000	265780000	9317	5542	8817	57504;57505;57506;57507;57508;57509;57510;57511;57512;57513;57514	77689;77690;77691;77692;77693;77694;77695;77696;77697;77698;77699;77700;77701;77702;77703;77704;77705;77706;77707	77695			19	
DSSAAQPGVAFSVDNTIK	1	Unmodified	1805.8796	0.8795571	5473	Q9UQ13	SHOC2	Leucine-rich repeat protein SHOC-2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	64.553	64.057	2	7.6534E-07	57999	160511_QHF_FH_JSI10i_1	115.12	104.79			1.0064	1.0563	21.058	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82016	0.91016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2349	1.2259	NaN	1	1	Median	33621000	17105000	16516000	0	0	0	19137000	12607000	6530200	0	0	0	14484000	4498000	9986200	9318	5473	8818	57515;57516	77708;77709	77709			2	
DSSDPNELYVNHK	1	Unmodified	1516.6794	0.67940073	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.365	24.673	2	1.3868E-05	21672	160511_QHF_FH_JSI11i_1	85.355	74.597			1.3076	1.3121	18.161	3	2	Plateau	2.2919	1.8725	NaN	1	1	Median	1.4759	1.6708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3076	1.3121	NaN	1	0	Median	74766000	24835000	49931000	24265000	6992600	17272000	23031000	5725500	17305000	0	0	0	27470000	12116000	15354000	9319	260	8819	57517;57518;57519;57520	77710;77711;77712;77713;77714	77710			5	
DSSESQLASTESDKPTTGR	1	Unmodified	1994.9029	0.90287132	3976	Q96B23	C18orf25	Uncharacterized protein C18orf25	yes	yes	0	0	0	1	By MS/MS		By MS/MS		1	0	2									1		1		22.848	22.176	3	0.014567	18943	160511_QHF_FH_JSI9i_1	37.292	20.607			1.2503	1.1234	3.3347	2	2	Median	1.2959	1.0972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2064	1.1502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53877000	18843000	35034000	31034000	10007000	21026000	0	0	0	22843000	8835700	14008000	0	0	0	9320	3976	8820	57521;57522	77715;77716	77716			2	
DSSGNLHGYVAEGGAK	1	Unmodified	1560.7168	0.71684887	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	25.02	24.571	2;3	6.7841E-05	21532	160511_QHF_FH_JSI10i_1	90.731	75.465			1.1401	1.1197	29.217	6	5	Median	1.4812	1.2549	NaN	1	1	Median	0.92531	1.068	41.028	2	1	Median	1.1713	1.1197	14.622	2	2	Median	0.65187	0.67267	NaN	1	1	Median	284040000	140800000	143240000	31103000	11466000	19637000	103300000	46287000	57012000	97977000	50908000	47069000	51666000	32140000	19526000	9321	3479	8821	57523;57524;57525;57526;57527;57528	77717;77718;77719;77720;77721;77722;77723	77720			7	
DSSGQHVDVSPTSQR	0	Unmodified	1598.7285	0.72847619	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	3	2	18.226	14.32	2;3	4.7713E-05	12075	160511_QHF_FH_JSI10i_1	74.12	63.39			0.93707	0.95164	8.8959	8	0	Median	1.06	0.86393	NaN	1	0	Median	0.84438	0.98862	6.7217	2	0	Median	0.8937	0.87907	6.4893	3	0	Plateau	0.91824	0.98018	16.802	2	0	Median	1309100000	654050000	655020000	436750000	172560000	264190000	309560000	158700000	150870000	258400000	151630000	106770000	304350000	171170000	133190000	9322	4315	8822	57529;57530;57531;57532;57533;57534;57535;57536	77724;77725;77726;77727;77728;77729;77730;77731;77732;77733;77734	77729			9	
DSSGTAVAPENR	0	Unmodified	1202.5527	0.55274365	121	O00308	WWP2	NEDD4-like E3 ubiquitin-protein ligase WWP2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.504	10.715	2	0.0021629	8198	160511_QHF_FH_JSI9i_1	59.84	53.736			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9323	121	8823	57537	77735	77735			1	
DSSGTKPANK	2	Acetyl (K)	1045.504	0.50400254	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	7.5654	0.17928	2	7.0271E-07	2425	160513_QHF_FH_JSI12Kac_2	131.11	106.95			0.77082	0.85359	14.769	6	0	Median	NaN	NaN	NaN	0	0	Median	0.64827	0.75717	17.597	2	0	Median	0.86738	0.85357	24.271	2	0	Median	0.80222	0.85359	0.58838	2	0	Median	64719000	33213000	31506000	0	0	0	22060000	12368000	9692100	12154000	5917600	6236200	30505000	14927000	15578000	9324	1743	8824	57538;57539;57540;57541;57542;57543	77736;77737;77738;77739;77740;77741;77742;77743;77744;77745	77744	1757		10	
DSSGWSSSK	1	Unmodified	939.39339	0.39338946	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	10.957	9.1823	2	1.7098E-06	7600	160511_QHF_FH_JSI9i_1	130.56	56.897			0.98592	0.94903	13.042	5	0	Median	1.1668	0.94903	NaN	1	0	Median	0.69885	0.83016	NaN	1	0	Median	1.0658	1.0379	17.43	2	0	Median	0.98592	1.0322	NaN	1	0	Median	1412900000	708910000	703970000	290380000	138460000	151920000	448680000	258590000	190090000	215460000	91875000	123590000	458360000	219980000	238380000	9325	154	8825	57544;57545;57546;57547;57548	77746;77747;77748;77749	77749			4	
DSSLPPHILEVIDK	1	Unmodified	1561.8352	0.83517309	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.721	80.569	3	0.0072019	69651	160511_QHF_FH_JSI12i_2	47.774	35.147			0.8556	0.90264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8556	0.90264	NaN	1	1	Median	13291000	8387300	4904100	0	0	0	0	0	0	0	0	0	13291000	8387300	4904100	9326	4449	8826	57549;57550	77750;77751	77750			2	
DSSLVVAFICK	1	Unmodified	1237.6377	0.63765925	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.79	1	2						1				2	2	87.248	76.748	2	1.204E-07	40260	160513_QHF_FH_JSI11Kac_5	116.52	96.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1406400	1406400	0	0	0	0	0	0	0	1406400	1406400	0	0	0	0	9327	4348	8827	57551;57552;57553;57554	77752;77753;77754;77755	77755			4	
DSSMADASK	1	Unmodified	910.37021	0.37021118	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		7.6132	7.4361	2	0.01057	5281	160511_QHF_FH_JSI10i_1	59.153	43.491			0.97265	1.0156	141.56	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32167	0.37324	NaN	1	1	Median	2.941	2.7633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	167740000	84643000	83101000	0	0	0	103490000	67798000	35691000	64256000	16845000	47411000	0	0	0	9328	4247	8828	57555;57556	77756;77757	77757			2	
DSSNVEEAFLR	0	Unmodified	1265.5888	0.58879481	3388	Q86YS6	RAB43	Ras-related protein Rab-43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.731	51.059	2	0.01658	45740	160511_QHF_FH_JSI10i_1	42.599	7.3034			0.96302	1.0346	31.128	4	0	Median	1.7564	1.4268	NaN	1	0	Median	0.85619	1.0044	NaN	1	0	Median	1.0832	1.0658	NaN	1	0	Median	0.627	0.66999	NaN	1	0	Median	5935000000	3000500000	2934500000	1374600000	522010000	852580000	1566900000	871130000	695770000	1558300000	716720000	841610000	1435200000	890640000	544570000	9329	3388	8829	57557;57558;57559;57560	77758	77758			1	
DSSQILSASFDQTIR	0	Unmodified	1666.8162	0.81622856	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	74.367	73.626	2	2.5186E-06	67077	160511_QHF_FH_JSI12i_1	123.28	114.32			1.1909	1.0994	8.5829	2	1	Median	1.4274	1.1682	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99359	1.0347	NaN	1	1	Median	152040000	81326000	70710000	72702000	32541000	40161000	0	0	0	0	0	0	79334000	48785000	30549000	9330	2801	8830	57561;57562	77759;77760	77759			2	
DSSQLGTDATK	1	Unmodified	1121.52	0.52004654	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	13.775	13.422	2	6.9421E-08	10734	160511_QHF_FH_JSI9i_1	125.74	91.94			0.70354	0.64158	97.52	6	5	Median	0.99031	0.8439	NaN	1	0	Median	0.7626	0.88365	139.28	2	2	Median	1.1632	1.1353	119.47	2	2	Median	0.26803	0.27735	NaN	1	1	Median	305420000	173810000	131610000	65690000	36799000	28892000	92574000	54389000	38185000	94535000	46846000	47689000	52619000	35779000	16839000	9331	339	8831	57563;57564;57565;57566;57567;57568	77761;77762;77763;77764;77765;77766	77766			6	
DSSQSPSQVDQFCK	1	Unmodified	1611.6835	0.68349983	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.886	32.647	2	0.00077651	29235	160511_QHF_FH_JSI11i_1	87.363	80.979			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9114400	9114400	0	0	0	0	0	0	0	9114400	9114400	0	0	0	0	9332	2462	8832	57569	77767	77767			1	
DSSRLPSEGPRPAHVVVGDVLQAADVDK	1	Unmodified	2913.4944	0.4944475	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			76.375	74.951	4	0.033961	61770	160511_QHF_FH_JSI10i_3	22.56	19.911			0.99391	1.001	13.981	2	1	Median	1.3269	1.105	NaN	1	0	Median	0.74446	0.90674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19273000	9484000	9788600	12854000	5059800	7794600	6418200	4424200	1994000	0	0	0	0	0	0	9333	1334	8833	57570;57571	77768;77769	77768			2	
DSSSTNLESMDTS	0	Unmodified	1372.53	0.53001888	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	35.741	35.321	2	8.3809E-05	31790	160511_QHF_FH_JSI12i_1	98.055	97.748			1.1127	1.0881	2.5867	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1947	1.1082	NaN	1	0	Median	1.0364	1.0684	NaN	1	0	Median	148960000	73873000	75082000	0	0	0	0	0	0	68495000	37152000	31344000	80460000	36722000	43738000	9334	3343	8834	57572;57573	77770;77771	77771			2	
DSSSVVEWTQAPK	1	Unmodified	1432.6834	0.68342347	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	53.607	52.859	2	2.4807E-10	47543	160511_QHF_FH_JSI10i_1	147.91	128.67			0.63616	0.65316	12.801	3	0	Plateau	1.0035	0.82445	NaN	1	0	Median	0.56837	0.66928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63616	0.65316	NaN	1	0	Median	264630000	157790000	106840000	75192000	37487000	37705000	88975000	53469000	35506000	0	0	0	100460000	66833000	33632000	9335	3699	8835	57574;57575;57576	77772;77773;77774	77772			3	
DSSTEKLLQK	2	Acetyl (K)	1189.619	0.6190323	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					3						1		2	47.793	38.585	2	0.001645	17775	160513_QHF_FH_JSI12Kac_2	85.731	38.533			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2740300	1681800	1058500	0	0	0	720140	720140	0	0	0	0	2020100	961680	1058500	9336	2997	8836	57577;57578;57579	77775;77776;77777	77776	2734		3	
DSSTPYQEIAAVPSAGR	0	Unmodified	1747.8377	0.83769228	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.123	59.019	2	0.0014037	52404	160511_QHF_FH_JSI9i_1	59.116	44.958			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9337	681	8837	57580	77778	77778			1	
DSSTQPPK	1	Unmodified	858.40831	0.40831125	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12	0					2							1	1	6.1262	-1.0819	2	0.032104	1918	160513_QHF_FH_JSI11Kac_2	48.561	18.376			0.94961	0.98342	1.759	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0257	0.99573	NaN	1	0	Median	0.87915	0.97126	NaN	1	0	Median	4421800	2226800	2195000	0	0	0	0	0	0	2358900	1230600	1128200	2062900	996170	1066700	9338	3341	8838	57581;57582	77779	77779			1	
DSSTSPGDYVLSVSENSR	0	Unmodified	1898.8494	0.84937918	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.63	61.996	2	3.1403E-31	56107	160511_QHF_FH_JSI10i_1	193.06	187.34			1.0806	1.0629	10.076	4	1	Median	1.4651	1.1886	NaN	1	0	Median	0.78723	0.93519	NaN	1	0	Median	1.1539	1.0937	NaN	1	0	Median	1.0119	1.0328	NaN	1	1	Median	239510000	112070000	127440000	59021000	22917000	36104000	59590000	31269000	28322000	65795000	32240000	33556000	55106000	25646000	29460000	9339	1582	8839	57583;57584;57585;57586	77780;77781;77782;77783;77784;77785;77786	77783			7	
DSSTSYTETK	1	Unmodified	1117.4775	0.47751302	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		12.141	4.8741	2	0.0036516	4029	160513_QHF_FH_JSI11Kac_2	67.704	57.717			1.5398	1.4966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5398	1.4966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7943200	2999600	4943600	0	0	0	0	0	0	7943200	2999600	4943600	0	0	0	9340	5380	8840	57587	77787	77787			1	
DSSVEVR	0	Unmodified	790.3821	0.38209649	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	11.297	4.0375	2	0.011925	4742	160513_QHF_FH_JSI11Kac_3	79.469	46.998			1.2055	1.1904	10.733	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82126	0.96092	NaN	1	0	Median	1.2055	1.1904	NaN	1	0	Median	0.97795	1.0559	NaN	1	0	Median	28663000	14858000	13805000	0	0	0	5545100	3206800	2338300	15142000	7402500	7739200	7976000	4248600	3727300	9341	282	8841	57588;57589;57590	77788;77789;77790	77788			3	
DSTEYTGPESYVAEMIK	1	Unmodified	1918.8506	0.85062474	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	92.233	91.711	2	5.1927E-06	83406	160511_QHF_FH_JSI11i_1	100.55	94.519			1.9311	1.7463	16.787	3	2	Median	1.9311	1.5436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8082	1.7463	NaN	1	0	Median	2.0685	2.1516	NaN	1	1	Median	59952000	25425000	34527000	11350000	5305100	6044900	0	0	0	28946000	11766000	17180000	19657000	8353900	11303000	9342	2549	8842	57591;57592;57593	77791;77792;77793;77794	77791			4	
DSTFLSTLEHHLSR	0	Unmodified	1641.8111	0.8110836	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	77.277	77.029	2;3	0.00021458	68409	160511_QHF_FH_JSI11i_3	70.529	59.674			1.9816	1.746	14.821	2	2	Median	1.9106	1.5723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0552	1.9389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	167370000	46569000	120800000	25995000	7022000	18973000	0	0	0	132190000	39547000	92642000	9187900	0	9187900	9343	3951	8843	57594;57595;57596;57597	77795;77796;77797;77798;77799	77795			5	
DSTGAADPPQPHIVGIQSPDQQAALAR	0	Unmodified	2739.3576	0.35761966	4354	Q9BQ95	ECSIT	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.19	61.54	3	4.9277E-10	55966	160511_QHF_FH_JSI12i_1	75.226	67.329			1.0468	1.0988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0468	1.0988	NaN	1	0	Median	48768000	21421000	27347000	0	0	0	0	0	0	0	0	0	48768000	21421000	27347000	9344	4354	8844	57598	77800	77800			1	
DSTGHVGFIFK	1	Unmodified	1206.6033	0.60332266	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.53		8	2					2	4	5	3	4	4	57.332	53.148	2;3	1.7931E-06	45563	160511_QHF_FH_JSI12i_2	118.67	101.3			0.85111	0.96851	36.684	16	9	Median	0.67844	0.5949	42.664	5	3	Median	0.83661	1.0246	14.64	3	1	Median	0.87256	0.87083	43.288	4	2	Median	0.92772	1.0459	20.879	4	3	Median	2184200000	1045600000	1138600000	477700000	265750000	211950000	512370000	288080000	224290000	681470000	269170000	412300000	512660000	222590000	290080000	9345	151	8845	57599;57600;57601;57602;57603;57604;57605;57606;57607;57608;57609;57610;57611;57612;57613;57614	77801;77802;77803;77804;77805;77806;77807;77808;77809;77810;77811;77812;77813;77814;77815;77816;77817;77818;77819;77820;77821;77822;77823	77804			23	
DSTLDAAEEIIK	1	Unmodified	1303.6507	0.65072636	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.931	73.43	2	3.345E-16	66898	160511_QHF_FH_JSI11i_1	164.97	138.59			1.0437	1.0101	19.188	4	1	Median	0.965	0.79504	NaN	1	0	Median	0.80761	0.94526	NaN	1	0	Median	1.1288	1.0793	NaN	1	0	Median	1.2226	1.2475	NaN	1	1	Median	377830000	183070000	194760000	93498000	44076000	49422000	92440000	49059000	43381000	108270000	53895000	54377000	83624000	36040000	47584000	9346	3176	8846	57615;57616;57617;57618	77824;77825;77826;77827;77828;77829;77830	77825			7	
DSTLIMQLLR	0	Oxidation (M)	1204.6486	0.64855829	2051;1990;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917;P62258	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH;YWHAE	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta;14-3-3 protein epsilon	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.05	10	15	9		2	7	11	40	6	34	31	19	16	89.138	82.915	2	9.46E-71	2072	160513_QHF_FH_JSI9Kac_4	240	195.65			0.71109	0.72474	158.94	90	71	Median	1.41	0.9699	125.27	30	23	Median	0.62692	0.71391	164.19	27	16	Median	0.42203	0.41756	188.31	17	16	Median	0.19924	0.22024	179.17	16	16	Median	4987100000	2599700000	2387400000	1540800000	701760000	839040000	1240600000	724910000	515720000	1319600000	681370000	638180000	886120000	491640000	394480000	9347	1976;1288;1384;2051;1385;2224;1990	8847	57619;57620;57621;57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648;57649;57650;57651;57652;57653;57654;57655;57656;57657;57658;57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670;57671;57672;57673;57674;57675;57676;57677;57678;57679;57680;57681;57682;57683;57684;57685;57686;57687;57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705;57706;57707;57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718	77831;77832;77833;77834;77835;77836;77837;77838;77839;77840;77841;77842;77843;77844;77845;77846;77847;77848;77849;77850;77851;77852;77853;77854;77855;77856;77857;77858;77859;77860;77861;77862;77863;77864;77865;77866;77867;77868;77869;77870;77871;77872;77873;77874;77875;77876;77877;77878;77879;77880;77881;77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895;77896;77897;77898;77899;77900;77901;77902;77903;77904;77905;77906;77907;77908;77909;77910;77911;77912;77913;77914;77915;77916;77917;77918;77919;77920;77921;77922;77923;77924;77925;77926;77927;77928;77929;77930;77931;77932;77933;77934;77935;77936;77937;77938;77939	77868		924	107	
DSTLIMQLLR	0	Unmodified	1188.6536	0.65364367	2051;1990;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917;P62258	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH;YWHAE	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta;14-3-3 protein epsilon	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.72	6.49	6	8	7					4	7	6	9	9	8	98.359	95.192	2	1.4495E-84	91825	160511_QHF_FH_JSI11i_1	263.57	208.96			1.354	1.2551	194.36	32	28	Median	2.6004	2.1767	219.64	6	4	Median	0.54895	0.64954	205.95	9	8	Median	3.1605	3.0747	189.74	9	8	Median	0.55211	0.56538	192.53	8	8	Median	72975000000	37851000000	35124000000	12946000000	5891400000	7054900000	18780000000	9827600000	8952300000	22642000000	11218000000	11423000000	18608000000	10914000000	7693900000	9348	1976;1288;1384;2051;1385;2224;1990	8847	57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750	77940;77941;77942;77943;77944;77945;77946;77947;77948;77949;77950;77951;77952;77953;77954;77955;77956;77957;77958;77959;77960;77961;77962;77963;77964;77965;77966;77967;77968;77969;77970;77971;77972;77973;77974	77942			35	
DSTPNQYMVLIK	1	Unmodified	1407.7068	0.70680145	3279	Q7Z569	BRAP	BRCA1-associated protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	71.634	70.69	2	0.00050331	64448	160511_QHF_FH_JSI12i_1	72.607	22.499			1.5463	1.2405	NaN	1	0	Median	1.5463	1.2405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26398000	11211000	15187000	26398000	11211000	15187000	0	0	0	0	0	0	0	0	0	9349	3279	8848	57751;57752	77975;77976	77975			2	
DSTQTPAVTPQSQPATTDSTVTVQK	1	Unmodified	2587.2613	0.26131924	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	1	3	45.223	44.716	2;3	1.9167E-20	40620	160511_QHF_FH_JSI12i_1	122.93	98.373			0.77685	0.77323	20.681	4	4	Median	NaN	NaN	NaN	0	0	Median	0.55843	0.65623	NaN	1	1	Median	0.75402	0.72193	NaN	1	1	Median	0.89541	0.93541	17.22	2	2	Median	276800000	152230000	124570000	0	0	0	69220000	42115000	27105000	72888000	36405000	36484000	134700000	73713000	60983000	9350	1240	8849	57753;57754;57755;57756;57757;57758	77977;77978;77979;77980;77981;77982;77983	77981			7	
DSVADPHNLK	1	Unmodified	1094.5356	0.53563702	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	0	By matching		By matching	By MS/MS	1	0	3									1		1	1	17.204	16.645	3	0.030523	14207	160511_QHF_FH_JSI12i_1	43.651	28.984			1.2931	1.2187	10.401	3	0	Median	1.2931	1.0707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3453	1.3152	NaN	1	0	Median	1.1923	1.2187	NaN	1	0	Median	168480000	77419000	91066000	57866000	22611000	35254000	0	0	0	55757000	25245000	30512000	54862000	29562000	25300000	9351	4092	8850	57759;57760;57761	77984	77984			0	
DSVAQGTTNVHSSEHAGR	0	Unmodified	1851.846	0.84596556	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	9.498	9.2887	3	1.0544E-16	6612	160511_QHF_FH_JSI12i_3	119.08	101.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9352	1576	8851	57762;57763	77985;77986	77986			2	
DSVASTITGVMDK	1	Unmodified	1322.6388	0.63878147	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	67.99	67.504	2	0.00014891	61445	160511_QHF_FH_JSI12i_1	107.85	93.728			1.0325	1.1335	20.762	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0672	1.2977	NaN	1	0	Median	0.83924	0.81973	NaN	1	1	Median	1.0932	1.1335	12.209	2	2	Median	220950000	107100000	113850000	0	0	0	66371000	28459000	37912000	54638000	29289000	25349000	99944000	49352000	50592000	9353	4281	8852	57764;57765;57766;57767	77987;77988;77989;77990	77989			4	
DSVFLSCSEDNR	0	Unmodified	1427.5987	0.59870757	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	2					2						3	1	41.281	40.799	2	0.0004729	36853	160511_QHF_FH_JSI11i_1	86.276	73.32			0.78955	0.80222	6.5619	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86157	0.84032	NaN	1	1	Median	0.72354	0.76585	NaN	1	1	Median	89434000	41825000	47608000	0	0	0	0	0	0	53393000	22701000	30693000	36041000	19125000	16916000	9354	4355	8853	57768;57769;57770;57771	77991;77992;77993;77994	77991			4	
DSVFTSMFHSVR	0	Unmodified	1411.6554	0.65543458	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		73.711	72.991	3	0.00043533	64969	160511_QHF_FH_JSI11i_3	61.11	57.465			0.86117	0.92247	3.8692	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74148	0.89757	NaN	1	1	Median	1.0002	0.94805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31812000	17337000	14476000	0	0	0	7409200	4402500	3006800	24403000	12934000	11469000	0	0	0	9355	2499	8854	57772;57773;57774	77995;77996;77997;77998	77996			4	
DSVGSLLFPVVEGR	0	Unmodified	1473.7827	0.78274359	2885	Q5H8A4	PIGG	GPI ethanolamine phosphate transferase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		96.77	96.441	2	8.833E-10	87625	160511_QHF_FH_JSI11i_1	105.46	78.946			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9356	2885	8855	57775;57776;57777	77999;78000;78001	78000			3	
DSVICLK	1	Unmodified	833.43169	0.43168922	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	2	3	40.113	37.558	2	0.0051766	33908	160511_QHF_FH_JSI12i_1	103.29	40.572			1.7101	1.471	47.217	9	7	Median	1.8932	1.5395	6.4326	2	2	Median	2.1269	2.5183	27.58	2	2	Median	0.88539	0.8542	35.543	2	0	Median	1.4146	1.5074	43.375	3	3	Plateau	3041000000	986480000	2054500000	460640000	129100000	331540000	1446000000	324470000	1121500000	509580000	285210000	224370000	624820000	247690000	377130000	9357	893	8856	57778;57779;57780;57781;57782;57783;57784;57785;57786	78002;78003;78004;78005;78006;78007;78008;78009;78010;78011	78004			10	
DSVLAGLK	1	Unmodified	801.45962	0.45961853	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				44.557	43.336	2	0.00072216	38333	160511_QHF_FH_JSI9i_1	94.262	34.621			1.5217	1.2702	NaN	1	1	Median	1.5217	1.2702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23598000	10570000	13028000	23598000	10570000	13028000	0	0	0	0	0	0	0	0	0	9358	3560	8857	57787;57788	78012;78013	78013			2	
DSVMQQNLVYYR	0	Unmodified	1514.7188	0.71876312	3885	Q92791	LEPREL4	Synaptonemal complex protein SC65	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.562	57.804	2	6.1422E-06	52262	160511_QHF_FH_JSI10i_1	119.22	93.838			0.85276	0.86031	23.46	2	2	Median	0.85587	0.72881	NaN	1	1	Median	0.84966	1.0155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86459000	46113000	40346000	32432000	16384000	16049000	54026000	29730000	24297000	0	0	0	0	0	0	9359	3885	8858	57789;57790;57791	78014;78015;78016	78015			3	
DSVMSANGKPDPDTVPDS	1	Unmodified	1830.7942	0.79417249	3297	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	41.527	41.072	2	5.5905E-10	36907	160511_QHF_FH_JSI10i_1	109.72	82.293			1.3943	1.3689	58.354	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.3829	1.572	NaN	1	1	Median	1.3943	1.3689	NaN	1	1	Median	0.51207	0.53772	NaN	1	1	Median	96785000	43364000	53421000	0	0	0	31332000	11945000	19388000	41752000	14224000	27528000	23701000	17196000	6505400	9360	3297	8859	57792;57793;57794;57795;57796	78017;78018;78019;78020;78021	78020			5	
DSVQVFQR	0	Unmodified	977.49304	0.49304393	3493	Q8N0W3	FUK	L-fucose kinase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.098	30.768	2	0.014969	27414	160511_QHF_FH_JSI10i_1	50.898	0.8576			0.65157	0.76238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65157	0.76238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92291000	51811000	40481000	0	0	0	92291000	51811000	40481000	0	0	0	0	0	0	9361	3493	8860	57797	78022	78022			1	
DSVTLQWEK	1	Unmodified	1104.5451	0.54513908	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.202	48.536	2	0.021805	43981	160511_QHF_FH_JSI12i_1	49.833	44.631			0.10971	0.11421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10971	0.11421	NaN	1	1	Median	110260000	89092000	21168000	0	0	0	0	0	0	0	0	0	110260000	89092000	21168000	9362	3821	8861	57798	78023	78023			1	
DSVVAGFQWATK	1	Unmodified	1307.651	0.65100113	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.35	5.44	6	4	4						3	4	5	4	4	72.629	70.636	2;3	6.388E-32	64903	160511_QHF_FH_JSI12i_1	195.27	171.95			0.81696	0.86083	39.356	17	6	Median	0.97725	0.81699	46.459	4	1	Median	0.72745	0.87479	43.875	5	2	Median	0.90486	0.86967	14.914	4	1	Median	0.80156	0.87399	48.497	4	2	Median	9704100000	4883000000	4821100000	2078100000	984870000	1093300000	3157300000	1694500000	1462800000	2221500000	1125300000	1096200000	2247200000	1078400000	1168800000	9363	1033	8862	57799;57800;57801;57802;57803;57804;57805;57806;57807;57808;57809;57810;57811;57812;57813;57814;57815	78024;78025;78026;78027;78028;78029;78030;78031;78032;78033;78034;78035;78036;78037;78038;78039;78040;78041;78042;78043;78044;78045;78046;78047;78048;78049;78050;78051;78052;78053;78054;78055;78056;78057;78058;78059;78060	78035			37	
DSVVLSLLK	1	Unmodified	972.58555	0.58554733	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.25	6.26		2					1	1			1	2	1	83.873	78.195	2	0.0010523	71013	160511_QHF_FH_JSI12i_2	81.296	36.215			0.37194	0.36495	26.434	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32429	0.31747	19.709	2	2	Median	0.42792	0.46845	NaN	1	1	Median	30869000	23156000	7713300	0	0	0	761730	761730	0	15383000	11514000	3869800	14724000	10880000	3843500	9364	316	8863	57816;57817;57818;57819	78061;78062;78063;78064	78061			4	
DSVWGSGGGQQSVNHLVK	1	Unmodified	1853.902	0.90202388	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.65	1	9	4					5		4	3	6	6	51.032	47.575	2;3	2.2411E-53	41987	160511_QHF_FH_JSI10i_2	242.48	229.5			1.1116	1.0893	14.053	18	2	Median	1.1819	0.98637	20.999	4	1	Median	0.93543	1.1609	14.594	3	0	Plateau	1.1059	1.0893	11.824	6	1	Median	1.1364	1.1901	9.4174	5	0	Median	3305800000	1658400000	1647400000	471340000	249350000	221990000	568130000	266360000	301770000	1149200000	615500000	533670000	1117100000	527190000	589950000	9365	2846	8864	57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838	78065;78066;78067;78068;78069;78070;78071;78072;78073;78074;78075;78076;78077;78078;78079;78080;78081;78082;78083;78084;78085;78086;78087;78088;78089;78090;78091;78092;78093;78094;78095;78096;78097;78098;78099;78100;78101;78102	78094			38	
DSVYIFR	0	Unmodified	898.45487	0.45486751	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	14	0							3				1	1	1	61.173	50.365	2	0.02764	28578	160513_QHF_FH_JSI11Kac_4	63.148	53.398			0.85632	1.0219	9.0093	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85632	1.0219	NaN	1	0	Median	0.87382	0.87945	NaN	1	0	Median	0.96751	1.0335	NaN	1	0	Median	11583000	5487600	6095300	0	0	0	4252800	1950400	2302300	3933800	2009700	1924100	3396300	1527500	1868800	9366	5674	8865	57839;57840;57841	78103;78104	78103			2	
DSWLDNIDWVK	1	Unmodified	1389.6565	0.65648044	692	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		99.708	99.583	2	0.0028325	90465	160511_QHF_FH_JSI11i_1	56.548	44.912			0.43663	0.41981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43663	0.41981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7822100	5689600	2132500	0	0	0	0	0	0	7822100	5689600	2132500	0	0	0	9367	692	8866	57842	78105	78105			1	
DSWNAGIMTVMSALSVAPSK	1	Unmodified	2064.002	0.001997195	3006	Q5XKP0	QIL1	Protein QIL1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.55	102.44	3	1.0924E-08	90238	160511_QHF_FH_JSI11i_2	104.86	98.742			1.4993	1.518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4993	1.518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	166480000	61984000	104490000	0	0	0	0	0	0	166480000	61984000	104490000	0	0	0	9368	3006	8867	57843	78106	78106			1	
DSWVDIFR	0	Unmodified	1036.4978	0.49779495	76	CON__Q3ZBS7			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	87.963	87.279	2	0.0052958	77625	160511_QHF_FH_JSI10i_2	66.073	55.2		+	1.0558	1.0707	15.849	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.63111	0.78387	NaN	1	0	Median	1.0558	1.0707	NaN	1	0	Median	0.79378	0.87203	NaN	1	0	Median	41988000	21011000	20977000	0	0	0	10600000	6489200	4111100	19157000	8923000	10234000	12230000	5598600	6631900	9369	76	8868	57844;57845;57846	78107;78108;78109	78109			3	
DSYDSYATHNE	0	Unmodified	1300.4844	0.48438931	2486	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.793	20.277	2	2.0899E-59	17493	160511_QHF_FH_JSI10i_1	231.26	231.26			0.95971	0.96565	5.7305	4	0	Linear	1.323	1.0942	NaN	1	0	Median	0.84927	0.98855	NaN	1	0	Median	1.0089	0.98479	NaN	1	0	Median	0.91289	0.96165	NaN	1	0	Median	545100000	280660000	264440000	120280000	52206000	68072000	138410000	76243000	62166000	142140000	76397000	65744000	144270000	75811000	68462000	9370	2486	8869	57847;57848;57849;57850	78110;78111;78112;78113;78114;78115;78116;78117	78115			8	
DSYESYGNSR	0	Unmodified	1176.4683	0.46834532	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	16.252	13.555	2	6.2473E-11	11647	160511_QHF_FH_JSI11i_1	145.72	126.09			0.82704	0.8756	18.57	6	0	Median	1.376	1.1367	NaN	1	0	Median	0.79724	0.92553	14.213	2	0	Median	0.89279	0.88064	NaN	1	0	Median	0.70444	0.75845	19.499	2	0	Median	728390000	378230000	350160000	153880000	65677000	88207000	185320000	99972000	85346000	178320000	81580000	96739000	210870000	131000000	79870000	9371	1474	8870	57851;57852;57853;57854;57855;57856;57857	78118;78119;78120;78121;78122;78123;78124;78125;78126;78127	78119			10	
DSYLILETLPTEYDSR	0	Unmodified	1913.9258	0.92583859	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	97.805	97.705	2;3	4.6324E-07	88731	160511_QHF_FH_JSI12i_1	89.189	63.752			1.6152	1.7742	83.384	4	3	Median	NaN	NaN	NaN	0	0	Median	0.72076	0.84003	34.655	2	1	Median	4.0665	3.8659	NaN	1	1	Median	2.8184	2.9327	NaN	1	1	Median	207470000	72444000	135030000	0	0	0	165800000	62251000	103550000	21911000	5685600	16225000	19762000	4507500	15255000	9372	1131	8871	57858;57859;57860;57861;57862	78128;78129;78130;78131;78132;78133;78134	78130			7	
DSYVGDEAQSK	1	Unmodified	1197.515	0.51496116	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	5.87	15	4	4	8	8	4	6	5	5	12	15	17	15	18.142	13.207	2	2.0367E-36	5461	160513_QHF_FH_JSI9Kac_3	202.05	175.61			0.91882	0.95497	46.707	49	24	Median	1.3995	1.1485	47.544	11	5	Median	0.87699	1.0286	51.553	14	8	Median	0.83947	0.85345	41.368	12	5	Median	0.85886	0.91668	42.857	12	6	Median	128840000000	63259000000	65580000000	24746000000	13401000000	11346000000	36718000000	19051000000	17667000000	30356000000	13381000000	16974000000	37019000000	17426000000	19593000000	9373	1916;2015;2062;2070	8872	57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915;57916;57917;57918;57919;57920;57921	78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153;78154;78155;78156;78157;78158;78159;78160;78161;78162;78163;78164;78165;78166;78167;78168;78169;78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185;78186;78187;78188;78189;78190;78191;78192;78193;78194;78195;78196;78197;78198;78199;78200;78201;78202;78203;78204;78205;78206;78207;78208;78209;78210;78211;78212;78213;78214;78215;78216;78217;78218;78219;78220;78221;78222;78223;78224;78225;78226	78174			92	
DSYVGDEAQSKR	1	Unmodified	1353.6161	0.61607219	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	2	3	12.475	12.07	2;3	9.8022E-07	9638	160511_QHF_FH_JSI11i_1	121.83	98.401			0.89821	0.91958	62.648	10	2	Median	2.699	2.2662	20.306	2	2	Median	0.48498	0.56762	12.52	3	0	Median	0.61147	0.60009	3.2338	2	0	Median	1.3159	1.3959	10.201	3	0	Median	1290600000	729360000	561270000	90196000	33572000	56624000	481610000	330480000	151130000	289850000	177510000	112340000	428980000	187810000	241180000	9374	1916;2015;2062;2070	8873	57922;57923;57924;57925;57926;57927;57928;57929;57930;57931;57932	78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239	78227			12	
DSYVGDEAQSKR	1	Acetyl (K)	1395.6266	0.62663688	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4					2	3	2	30.9	22.494	2;3	2.9532E-11	13338	160513_QHF_FH_JSI12Kac_3	125.74	111.53			1.0487	1.0462	79.315	7	2	Median	NaN	NaN	NaN	0	0	Median	1.0792	1.2825	3.2649	2	0	Median	0.40801	0.40211	130.1	3	2	Plateau	0.73199	0.77315	8.5183	2	0	Median	60341000	37830000	22511000	0	0	0	15851000	8425400	7425600	26511000	19574000	6936100	17979000	9830200	8149200	9375	1916;2015;2062;2070	8873	57933;57934;57935;57936;57937;57938;57939	78240;78241;78242;78243;78244;78245;78246;78247;78248	78245	1913		9	
DTAASGYGTQNIR	0	Unmodified	1352.6321	0.6320566	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	2	2	26.355	23.483	2	4.0582E-07	20894	160511_QHF_FH_JSI12i_1	135.8	118.63			1.0347	1.0608	20.179	7	2	Median	1.0347	0.84715	NaN	1	1	Median	1.0719	1.2553	17.67	2	0	Median	1.2623	1.2199	20.82	2	1	Median	0.92016	0.97256	12.283	2	0	Median	442050000	223050000	219000000	90458000	49912000	40546000	121840000	58142000	63696000	112450000	53018000	59433000	117300000	61977000	55326000	9376	5554	8874	57940;57941;57942;57943;57944;57945;57946	78249;78250;78251;78252;78253;78254;78255;78256;78257	78250			9	
DTAAWTVGR	0	Unmodified	975.47739	0.47739386	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	4	3					3			1	3	2	4	37.786	34.262	2	4.9308E-07	31189	160511_QHF_FH_JSI11i_1	138.54	127.85			0.70679	0.75111	44.382	10	6	Median	0.67199	0.58701	NaN	1	1	Median	0.57331	0.68359	20.563	3	1	Median	0.86558	0.85039	4.2365	2	0	Median	0.70544	0.78173	71.312	4	4	Median	2094500000	1108000000	986550000	35902000	21988000	13915000	529820000	308770000	221050000	506870000	234930000	271940000	1021900000	542280000	479650000	9377	2585	8875	57947;57948;57949;57950;57951;57952;57953;57954;57955;57956	78258;78259;78260;78261;78262;78263;78264;78265;78266;78267;78268;78269;78270;78271;78272	78260			15	
DTAEGVSQELISAGLVDGR	0	Unmodified	1915.9487	0.9486993	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		84.741	84.376	2	0.0026341	76890	160511_QHF_FH_JSI11i_1	56.482	47.049			0.771	0.73962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.771	0.73962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11466000	8563600	2902800	0	0	0	0	0	0	11466000	8563600	2902800	0	0	0	9378	721	8876	57957	78273	78273			1	
DTALETALNAK	1	Unmodified	1145.5928	0.59281755	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		59.642	50.032	2	0.0037907	26468	160513_QHF_FH_JSI11Kac_3	72.643	30.453			0.66347	0.64098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66347	0.64098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1590900	830900	759960	0	0	0	0	0	0	1590900	830900	759960	0	0	0	9379	1737	8877	57958;57959	78274;78275	78274			2	
DTALLEDLGK	1	Unmodified	1073.5605	0.56045479	4232	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	69.931	69.273	2	6.0103E-05	62845	160511_QHF_FH_JSI12i_1	103.55	84.452			5.071	5.0703	270.2	5	5	Median	1.0661	0.87037	379.83	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5075	0.48589	332.59	2	2	Median	5.071	5.0703	NaN	1	1	Median	122180000	57880000	64297000	51021000	24486000	26536000	0	0	0	54416000	31087000	23328000	16740000	2307000	14433000	9380	4232	8878	57960;57961;57962;57963;57964;57965	78276;78277;78278;78279;78280;78281	78278			6	
DTAPVLEGLK	1	Unmodified	1041.5706	0.57062555	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	54.984	54.325	2	2.3114E-05	49286	160511_QHF_FH_JSI12i_1	98.033	60.475			1.2246	1.0997	21.829	4	0	Median	1.3284	1.0766	NaN	1	0	Median	0.67885	0.78808	NaN	1	0	Median	1.1481	1.1232	NaN	1	0	Median	1.3061	1.33	NaN	1	0	Median	321710000	156690000	165030000	82931000	29890000	53041000	70773000	43857000	26916000	84980000	41189000	43791000	83027000	41749000	41278000	9381	655	8879	57966;57967;57968;57969;57970	78282;78283;78284;78285;78286;78287	78283			4	
DTASLSTTPSESPR	0	Unmodified	1447.6791	0.67906638	4931	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	28.241	26.973	2	2.8063E-07	24070	160511_QHF_FH_JSI12i_1	91.961	68.642			1.7718	1.4291	NaN	1	1	Median	1.7718	1.4291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12380000	3450800	8929500	12380000	3450800	8929500	0	0	0	0	0	0	0	0	0	9382	4931	8880	57971;57972;57973;57974	78288;78289;78290;78291	78289			4	
DTAVQGNIR	0	Unmodified	972.49886	0.49885759	5259	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	20.035	12.742	2	7.2394E-05	8768	160513_QHF_FH_JSI11Kac_3	117.16	91.333			0.92919	0.86398	21.534	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73177	0.86398	NaN	1	0	Median	1.1704	1.1961	NaN	1	0	Median	0.73773	0.79614	NaN	1	0	Median	14034000	7219900	6814400	0	0	0	3332000	1631300	1700700	6079400	3091300	2988100	4622800	2497300	2125500	9383	5259	8881	57975;57976;57977	78292;78293;78294;78295;78296	78293			5	
DTAYPETNDAIPMISK	1	Unmodified	1764.824	0.82401605	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.094	67.514	2	2.5837E-07	61061	160511_QHF_FH_JSI10i_1	136.38	104.12			1.195	1.106	13.024	4	0	Median	1.3189	1.0752	NaN	1	0	Median	0.83571	0.98235	NaN	1	0	Median	1.3592	1.339	NaN	1	0	Median	1.0827	1.1376	NaN	1	0	Median	616250000	278120000	338130000	135590000	49653000	85942000	146050000	82965000	63083000	175630000	69409000	106230000	158970000	76093000	82877000	9384	5479	8882	57978;57979;57980;57981	78297;78298;78299;78300;78301;78302;78303;78304;78305;78306	78301			10	
DTDAAVGDNIGYITFVLFPR	0	Unmodified	2183.0899	0.089884225	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	98.587	89.299	2	5.804E-23	49010	160513_QHF_FH_JSI12Kac_6	138.28	115.75			1.0248	0.97681	15.003	2	1	Median	1.0224	0.87849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.0861	NaN	1	0	Median	78644000	41345000	37299000	39537000	23636000	15901000	0	0	0	0	0	0	39108000	17710000	21398000	9385	256	8883	57982;57983	78307;78308	78308			1	
DTDDVPMILVGNK	1	Unmodified	1415.6966	0.6966307	1946	P61224;A6NIZ1	RAP1B	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									1	3	3	3	75.454	75.1	2;3	1.0235E-22	68381	160511_QHF_FH_JSI12i_1	145.89	130.62			0.96679	1.0422	11.384	5	2	Median	NaN	NaN	NaN	0	0	Median	0.88126	1.0148	3.7617	2	1	Median	1.3202	1.2985	NaN	1	0	Median	1.0413	1.0889	9.8817	2	1	Median	369480000	174460000	195020000	0	0	0	165140000	81430000	83713000	27426000	14027000	13399000	176910000	79004000	97907000	9386	1946	8884	57984;57985;57986;57987;57988;57989;57990;57991;57992;57993	78309;78310;78311;78312;78313;78314;78315;78316;78317;78318;78319;78320;78321;78322	78315			13	
DTDEADLVLAK	1	Unmodified	1188.5874	0.58739782	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	52.707	51.952	2	1.3349E-05	47197	160511_QHF_FH_JSI12i_1	107.21	85.355			8.8717	6.5593	38.739	3	3	Plateau	5.8104	4.7636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9.4401	9.0319	NaN	1	1	Median	4.2093	4.4926	NaN	1	1	Median	1902000000	137690000	1764300000	592760000	46448000	546310000	0	0	0	1051500000	55287000	996170000	257750000	35957000	221790000	9387	1572	8885	57994;57995;57996	78323;78324;78325;78326	78325			4	
DTDFEHR	0	Unmodified	918.38316	0.38315913	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	10.061	9.6891	2	0.012047	7220	160511_QHF_FH_JSI12i_2	69.998	58.63			1.1837	1.0131	42.008	7	0	Median	1.1837	1.0131	NaN	1	0	Median	0.93652	1.1293	59.406	2	0	Median	1.1387	1.1331	47.701	2	0	Median	1.3739	1.4697	59.457	2	0	Median	504430000	235120000	269310000	41234000	20066000	21168000	157890000	71596000	86292000	157600000	73241000	84354000	147710000	70218000	77494000	9388	1129	8886	57997;57998;57999;58000;58001;58002;58003	78327;78328;78329;78330;78331;78332;78333;78334	78330			8	
DTDIQGFLK	1	Unmodified	1035.5237	0.52367535	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	2	3	63.744	62.008	2	9.5205E-06	55832	160511_QHF_FH_JSI10i_1	128.61	85.607			1.0825	1.0505	113.13	7	4	Median	0.99826	0.81089	NaN	1	0	Median	1.8449	2.1778	NaN	1	1	Median	1.454	1.402	40.813	2	2	Median	0.86957	0.94635	180.8	3	1	Median	1024000000	355880000	668150000	182220000	65184000	117030000	144760000	49511000	95254000	368090000	138480000	229610000	328960000	102710000	226250000	9389	3503	8887	58004;58005;58006;58007;58008;58009;58010	78335;78336;78337;78338;78339;78340;78341;78342	78339			8	
DTDIVDEAIYYFK	1	Unmodified	1590.7454	0.74535503	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	101.88	101.77	2	1.3475E-30	92559	160511_QHF_FH_JSI10i_1	215.89	178.55			0.72384	0.81518	22.561	5	3	Median	0.65947	0.54938	NaN	1	1	Median	0.72384	0.86302	NaN	1	0	Median	0.82643	0.81518	NaN	1	0	Median	0.79505	0.83745	24.342	2	2	Median	932690000	493950000	438740000	77658000	34803000	42856000	226090000	126810000	99284000	178330000	92978000	85353000	450610000	239350000	211250000	9390	257	8888	58011;58012;58013;58014;58015	78343;78344;78345;78346;78347;78348;78349	78347			7	
DTDPDSKPFSLQETYEAK	2	Unmodified	2069.9429	0.94294522	2498	Q14141;Q9NVA2	SEPT6;SEPT11	Septin-6;Septin-11	yes	no	0	0	0	1		By MS/MS			1	0	1										1			53.781	53.377	3	6.7855E-05	48188	160511_QHF_FH_JSI10i_1	49.306	41.119			1.1429	1.3301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1429	1.3301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97767000	36914000	60853000	0	0	0	97767000	36914000	60853000	0	0	0	0	0	0	9391	2498	8889	58016	78350	78350			1	
DTDSEEEIR	0	Unmodified	1092.4571	0.45711193	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	1	2	3	14.234	11.919	2	7.1337E-06	10303	160511_QHF_FH_JSI11i_1	112.84	75.284			0.83766	0.90667	24.888	7	3	Median	1.2711	1.0743	NaN	1	0	Median	0.83766	0.992	NaN	1	1	Median	0.82365	0.77966	3.4007	2	0	Median	0.84122	0.90667	37.869	3	2	Median	302710000	163110000	139600000	64705000	30770000	33935000	62099000	32417000	29682000	86011000	49539000	36472000	89895000	50381000	39514000	9392	958	8890	58017;58018;58019;58020;58021;58022;58023	78351;78352;78353;78354;78355;78356;78357;78358;78359	78351			9	
DTDSEEEIREAFR	0	Unmodified	1595.7063	0.70634376	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	4.12	14	13	1					2	1	11	6	9	5	50.731	48.879	2;3	2.0337E-81	42020	160511_QHF_FH_JSI11i_2	249.23	208.5			1.0364	1.0195	12.709	30	3	Median	1.2215	1.0143	16.939	10	0	Median	0.84935	1.0307	10.966	6	1	Median	1.0018	0.98001	9.9251	9	2	Median	1.0375	1.1085	6.4373	5	0	Median	16995000000	8547700000	8446800000	2772400000	1200500000	1571900000	4836000000	2711200000	2124800000	5599800000	2698300000	2901500000	3786400000	1937700000	1848600000	9393	958	8891	58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054	78360;78361;78362;78363;78364;78365;78366;78367;78368;78369;78370;78371;78372;78373;78374;78375;78376;78377;78378;78379;78380;78381;78382;78383;78384;78385;78386;78387;78388;78389;78390;78391;78392;78393;78394;78395;78396;78397;78398;78399;78400;78401;78402;78403;78404;78405;78406;78407;78408;78409;78410;78411;78412;78413;78414;78415;78416;78417;78418;78419	78406			59	
DTDSINLYK	1	Unmodified	1067.5135	0.5135046	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.91	5				1	4				1	3	3	3	44.71	40.269	2	4.9308E-07	36743	160511_QHF_FH_JSI12i_1	138.54	127.32			1.0897	1.1123	57.034	9	4	Median	1.0897	0.90558	NaN	1	0	Median	0.90237	1.0692	5.5868	2	0	Median	1.0132	1.0005	69.092	3	2	Median	1.1012	1.1512	50.169	3	2	Plateau	2196900000	1166100000	1030800000	359070000	171700000	187370000	480340000	281870000	198460000	882280000	433710000	448570000	475230000	278790000	196440000	9394	231	8892	58055;58056;58057;58058;58059;58060;58061;58062;58063;58064	78420;78421;78422;78423;78424;78425;78426;78427;78428;78429;78430;78431;78432;78433;78434	78423			15	
DTDSINLYKNMR	1	Acetyl (K);Oxidation (M)	1526.7035	0.70350699	231	O14980	XPO1	Exportin-1	yes	yes	1	0	1	1		By MS/MS	By MS/MS		13	0						2					1	1		56.763	47.262	2	0.00051939	25335	160513_QHF_FH_JSI11Kac_3	82.749	64.482			0.95254	1.0004	68.962	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4038	1.6291	NaN	1	0	Median	0.64636	0.6143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3760400	1910400	1850000	0	0	0	1582300	544090	1038200	2178100	1366300	811780	0	0	0	9395	231	8893	58065;58066	78435;78436;78437;78438	78435	126	99	4	
DTDSINLYKNMR	1	Acetyl (K)	1510.7086	0.70859237	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			70.377	60.947	2	0.031551	30536	160513_QHF_FH_JSI10Kac_3	46.158	38.233			0.80451	0.92001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80451	0.92001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1314000	660150	653870	0	0	0	1314000	660150	653870	0	0	0	0	0	0	9396	231	8893	58067	78439	78439	126		1	
DTDTLDLSGPAR	0	Unmodified	1259.5994	0.59935949	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.978	42.342	2	0.013911	38491	160511_QHF_FH_JSI12i_1	53.237	39.031			2.8495	2.9946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8495	2.9946	NaN	1	1	Median	30123000	7182800	22940000	0	0	0	0	0	0	0	0	0	30123000	7182800	22940000	9397	398	8894	58068	78440	78440			1	
DTDWVVVK	1	Unmodified	960.49165	0.49164694	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		53.883	53.478	2	0.021447	48349	160511_QHF_FH_JSI11i_1	55.676	28.422			4.8376	5.0102	37.642	2	2	Median	NaN	NaN	NaN	0	0	Median	5.7447	6.538	NaN	1	1	Median	4.0737	3.8393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51030000	12520000	38510000	0	0	0	26136000	4464700	21671000	24894000	8055200	16839000	0	0	0	9398	4422	8895	58069;58070	78441;78442	78441			2	
DTEAGETFSSVQANLSK	1	Unmodified	1782.8272	0.82718718	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	60.509	60.042	2	9.7308E-16	54333	160511_QHF_FH_JSI10i_1	191.06	177.63			0.77739	0.85182	22.048	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.90996	1.0551	37.259	2	2	Median	1.056	1.0179	NaN	1	1	Median	0.9284	0.95226	NaN	1	1	Median	173870000	84575000	89298000	0	0	0	80563000	43005000	37558000	46145000	21451000	24694000	47164000	20119000	27046000	9399	1430	8896	58071;58072;58073;58074	78443;78444;78445;78446	78446			4	
DTEAVMAFLEAK	1	Unmodified	1323.6381	0.63805318	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.648	96.664	2	6.78E-05	87655	160511_QHF_FH_JSI10i_1	106.29	74.797			0.32005	0.3424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32005	0.3424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9471200	7652900	1818300	0	0	0	9471200	7652900	1818300	0	0	0	0	0	0	9400	2928	8897	58075	78447	78447			1	
DTEDVPMILVGNK	1	Unmodified	1429.7123	0.71228076	2023	P62834	RAP1A	Ras-related protein Rap-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									1	3	4	2	75.632	75.24	2;3	3.362E-10	68172	160511_QHF_FH_JSI10i_1	145.25	137.97			0.81436	0.7498	37.255	7	5	Median	0.90645	0.7498	NaN	1	0	Median	0.68496	0.80547	24.051	2	1	Median	1.4584	1.4337	46.307	3	3	Median	0.63937	0.64581	NaN	1	1	Median	830390000	416870000	413520000	152840000	79279000	73557000	172610000	90639000	81972000	374420000	167190000	207240000	130520000	79761000	50754000	9401	2023	8898	58076;58077;58078;58079;58080;58081;58082;58083;58084;58085	78448;78449;78450;78451;78452;78453;78454;78455;78456;78457;78458;78459;78460;78461;78462;78463	78456			16	
DTEEPLPVK	1	Unmodified	1026.5233	0.523341	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	36.788	34.53	2	4.1189E-06	30417	160511_QHF_FH_JSI9i_1	120.46	80.794			0.83782	0.78104	15.171	5	1	Median	0.95258	0.78104	NaN	1	0	Median	0.78834	0.92054	NaN	1	0	Median	0.83782	0.7769	NaN	1	0	Median	0.69735	0.73285	23.9	2	1	Median	348490000	181690000	166790000	106790000	50656000	56136000	87601000	51376000	36225000	68405000	34437000	33968000	85688000	45224000	40464000	9402	1141	8899	58086;58087;58088;58089;58090;58091	78464;78465;78466;78467;78468;78469	78468			5	
DTEEVELK	1	Unmodified	961.46041	0.4604064	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	25.257	24.926	2	0.0010581	21931	160511_QHF_FH_JSI10i_1	113.7	83.136			1.7996	2.023	22.97	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.08	2.4546	NaN	1	1	Median	1.6975	1.6672	NaN	1	1	Median	2.4642	2.5074	NaN	1	1	Median	343420000	108930000	234480000	0	0	0	109580000	28864000	80718000	120860000	36867000	83989000	112980000	43201000	69776000	9403	5285	8900	58092;58093;58094	78470;78471;78472	78472			3	
DTELAEELLQWFLQEEK	1	Unmodified	2120.0314	0.031366293	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			102.45	95.865	2;3	4.5392E-143	57139	160513_QHF_FH_JSI10Kac_6	308.58	252.49			0.1897	0.21858	236.75	3	3	Median	0.1745	0.14275	NaN	1	1	Median	1.2873	1.5142	273.72	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219240000	166900000	52335000	16107000	12896000	3210800	203130000	154010000	49125000	0	0	0	0	0	0	9404	2155	8901	58095;58096;58097;58098	78473;78474;78475;78476	78474			4	
DTELLALQTK	1	Unmodified	1130.6183	0.61830402	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	57.967	57.427	2	0.0001597	52048	160511_QHF_FH_JSI11i_1	95.523	14.185			0.79607	0.81172	22.198	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71168	0.69381	NaN	1	1	Median	0.89046	0.94968	NaN	1	1	Median	93608000	55093000	38514000	0	0	0	0	0	0	53195000	33117000	20078000	40412000	21976000	18437000	9405	3395	8902	58099;58100	78477;78478	78477			2	
DTEMLATGAQDGK	1	Unmodified	1335.5976	0.59764493	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					2	2	2	2	34.969	31.216	2	4.141E-11	28202	160511_QHF_FH_JSI12i_1	196.48	166.32			0.26987	0.30464	99.32	6	5	Median	0.6419	0.52785	147.73	2	1	Median	0.29719	0.34615	NaN	1	1	Median	0.17635	0.17288	NaN	1	1	Median	0.59544	0.63477	121.89	2	2	Median	594120000	346440000	247670000	223630000	111310000	112320000	149510000	112330000	37174000	101030000	81337000	19697000	119950000	41468000	78482000	9406	2801	8903	58101;58102;58103;58104;58105;58106;58107;58108	78479;78480;78481;78482;78483;78484;78485;78486	78481			8	
DTEMLATGAQDGK	1	Oxidation (M)	1351.5926	0.59255956	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				32.751	31.486	2	0.011484	27571	160511_QHF_FH_JSI9i_1	65.5	56.542			0.14243	0.11527	NaN	1	1	Median	0.14243	0.11527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10748000	9005000	1742900	10748000	9005000	1742900	0	0	0	0	0	0	0	0	0	9407	2801	8903	58109	78487	78487		2145	1	
DTEPLIQTAK	1	Unmodified	1114.587	0.58700389	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.46	5.05	6		1	4	5	7	3			4	9	5	8	41.151	33.662	2	1.0061E-18	31847	160511_QHF_FH_JSI12i_1	169.44	121.59			1.3263	1.5039	77.814	25	23	Median	1.2224	1.0088	95.176	3	2	Median	1.0135	1.2111	80.333	9	9	Median	1.9893	1.9411	95.735	5	5	Median	1.4268	1.5262	62.947	8	7	Median	11874000000	6067500000	5806300000	3580700000	1728400000	1852300000	4003600000	2105100000	1898400000	2365200000	1145900000	1219300000	1924200000	1088000000	836190000	9408	1630	8904	58110;58111;58112;58113;58114;58115;58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135	78488;78489;78490;78491;78492;78493;78494;78495;78496;78497;78498;78499;78500;78501;78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519	78492			32	
DTEPTNFK	1	Unmodified	950.43453	0.434526	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		18.747	18.305	2	0.0005966	15715	160511_QHF_FH_JSI10i_1	125.25	87.607			2.4823	3.0005	44.539	4	4	Linear	1.4035	1.1572	NaN	1	1	Median	2.4823	2.8763	3.2969	2	2	Median	2.812	2.6856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	969930000	232240000	737690000	188720000	45497000	143220000	468990000	114730000	354260000	312230000	72016000	240220000	0	0	0	9409	2594	8905	58136;58137;58138;58139	78520;78521;78522;78523	78522			4	
DTEQVDNWMSK	1	Unmodified	1351.5714	0.57143018	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.89	49.224	2	6.1338E-20	44721	160511_QHF_FH_JSI12i_1	148.56	129.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9410	2470	8906	58140	78524	78524			1	
DTEVAAPWTEETVK	1	Unmodified	1574.7464	0.74641766	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	61.248	60.525	2	6.0932E-05	54973	160511_QHF_FH_JSI11i_1	117.86	91.796			1.0846	1.0572	46.244	3	2	Plateau	2.888	2.3553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0846	1.0572	NaN	1	0	Median	1.0126	1.0574	NaN	1	1	Median	231500000	102780000	128720000	48056000	14641000	33415000	0	0	0	104400000	44785000	59614000	79047000	43357000	35690000	9411	3888	8907	58141;58142;58143	78525;78526;78527;78528	78526			4	
DTFDKNYK	2	Acetyl (K)	1071.4873	0.48728985	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		38.007	29.09	2	0.011011	16832	160513_QHF_FH_JSI11Kac_3	73.26	45.086			0.75449	0.80962	119.79	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6277	1.8887	NaN	1	0	Median	0.34973	0.34706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8554000	5615300	2938700	0	0	0	2090000	879370	1210600	6464000	4736000	1728100	0	0	0	9412	4562	8908	58144;58145	78529;78530	78530	3187		2	
DTFEHDPSESIDEFNK	1	Unmodified	1908.8014	0.80136636	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	54.005	53.341	2;3	1.3336E-15	48110	160511_QHF_FH_JSI10i_1	157.58	147.83			0.908	0.94737	9.8018	8	2	Median	1.1	0.89966	7.3176	2	0	Median	0.86547	1.0191	1.2132	2	0	Median	0.87631	0.84864	15.556	2	1	Median	0.90336	0.94005	4.3044	2	1	Median	1086200000	554670000	531520000	219740000	95448000	124300000	234020000	139180000	94846000	270820000	136140000	134680000	361600000	183910000	177690000	9413	5124	8909	58146;58147;58148;58149;58150;58151;58152;58153	78531;78532;78533;78534;78535;78536;78537;78538;78539;78540;78541;78542;78543;78544;78545;78546	78540			16	
DTFLGPVLK	1	Unmodified	988.55933	0.55933258	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	70.671	68.069	2	7.1562E-05	35561	160513_QHF_FH_JSI11Kac_4	102.72	55.652			0.89172	0.85279	15.654	5	2	Median	1.0355	0.85279	NaN	1	0	Median	0.71424	0.83442	NaN	1	0	Median	1.0346	0.9887	16.918	2	1	Median	0.70261	0.72243	NaN	1	1	Median	226710000	121810000	104900000	46770000	22893000	23877000	57243000	32642000	24601000	70680000	36502000	34178000	52015000	29775000	22240000	9414	5603	8910	58154;58155;58156;58157;58158	78547;78548;78549;78550	78549			2	
DTFNGNLPFLFK	1	Unmodified	1411.7136	0.71360139	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								2	1	1		100.54	100.45	2	4.0341E-06	88152	160511_QHF_FH_JSI9i_2	100.25	84.631			1.1293	0.74314	28.437	3	3	Plateau	0.76914	0.67356	NaN	1	1	Median	0.63352	0.74314	NaN	1	1	Median	1.1555	1.1492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125840000	76323000	49520000	32239000	19389000	12850000	47215000	31627000	15588000	46388000	25307000	21081000	0	0	0	9415	1418	8911	58159;58160;58161;58162	78551;78552;78553;78554	78553			4	
DTFNHLTTWLEDAR	0	Unmodified	1717.806	0.80599822	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	84.848	84.359	2;3	2.8645E-05	72863	160511_QHF_FH_JSI12i_3	87.932	51.162			1.1366	1.1453	9.1326	11	0	Median	1.1895	1.0167	NaN	1	0	Median	0.92999	1.1604	10.133	2	0	Median	1.1925	0.97892	9.9896	4	0	Linear	1.107	1.1721	10.033	4	0	Median	912130000	476920000	435210000	39037000	17612000	21425000	144690000	86790000	57895000	377180000	190510000	186670000	351230000	182010000	169220000	9416	1930	8912	58163;58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174	78555;78556;78557;78558;78559;78560;78561;78562;78563;78564;78565;78566;78567;78568;78569	78569			15	
DTFYIFNHVDIK	1	Unmodified	1510.7456	0.7456298	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	1	3	1	81.936	75.08	2;3	4.2217E-07	40100	160513_QHF_FH_JSI11Kac_6	132.17	112.04			0.66671	0.65363	70.691	5	3	Median	NaN	NaN	NaN	0	0	Median	0.24194	0.28483	NaN	1	1	Median	0.66671	0.65363	35.15	3	1	Median	1.7013	1.8489	NaN	1	1	Median	179780000	113600000	66179000	0	0	0	70877000	56903000	13974000	87163000	47753000	39410000	21738000	8943400	12795000	9417	4316	8913	58175;58176;58177;58178;58179;58180	78570;78571;78572;78573;78574;78575;78576;78577	78572			8	
DTGEKLTVAENEAETK	2	Acetyl (K)	1775.8425	0.84250289	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	64.182	54.744	2	4.4497E-05	24311	160513_QHF_FH_JSI12Kac_2	102.66	80.187			0.74782	0.81019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74782	0.81019	NaN	1	0	Median	2228800	1026500	1202300	0	0	0	0	0	0	0	0	0	2228800	1026500	1202300	9418	878	8914	58181	78578	78578	587		1	
DTGGDGQDSLYK	1	Unmodified	1254.5364	0.53642488	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.67	5.19	2				1						1	1	1	21.215	20.946	2	1.3996E-10	18265	160511_QHF_FH_JSI12i_1	128.81	109.54			0.5739	0.64869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5739	0.64869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20736000	14681000	6054200	0	0	0	20736000	14681000	6054200	0	0	0	0	0	0	9419	5599	8915	58182;58183;58184	78579;78580;78581	78580			3	
DTGIFLDLMHLK	1	Unmodified	1401.7326	0.73262227	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.84		8	4						13	6	6	6	7	97.152	92.718	2;3	3.0485E-23	87277	160511_QHF_FH_JSI12i_2	180.67	155.84			0.98087	0.97244	70.55	25	13	Median	1.045	0.85993	53.022	6	3	Median	0.85496	1.0436	86.623	6	3	Median	1.0678	1.0346	79.188	6	3	Median	0.97307	1.0448	70.403	7	4	Median	6447800000	3602000000	2845800000	961770000	463600000	498160000	1458700000	828410000	630310000	1885400000	1052700000	832650000	2142000000	1257300000	884670000	9420	1023	8916	58185;58186;58187;58188;58189;58190;58191;58192;58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209	78582;78583;78584;78585;78586;78587;78588;78589;78590;78591;78592;78593;78594;78595;78596;78597;78598;78599;78600;78601;78602;78603;78604;78605;78606;78607;78608;78609;78610;78611;78612;78613;78614;78615;78616	78584			35	
DTGIFLDLMHLK	1	Oxidation (M)	1417.7275	0.72753689	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		87.504	86.933	3	0.010438	76482	160511_QHF_FH_JSI11i_2	37.968	25.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9421	1023	8916	58210	78617	78617		613	1	
DTGIFLDLMHLKK	2	Acetyl (K)	1571.8381	0.83814998	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		94.284	84.901	3	7.5527E-06	47891	160513_QHF_FH_JSI11Kac_6	106.13	95.343			0.048406	0.045502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.048406	0.045502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147770000	145260000	2514300	0	0	0	0	0	0	147770000	145260000	2514300	0	0	0	9422	1023	8917	58211	78618	78618	840		1	
DTGKTPVEPEVAIHR	1	Acetyl (K)	1689.8686	0.86859848	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	55.69	45.09	3	0.0076663	25535	160513_QHF_FH_JSI12Kac_4	53.169	43.248			0.596	0.66937	141.87	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5537	1.8254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.22863	0.24546	NaN	1	1	Median	10918000	7049000	3868700	0	0	0	6123200	2604800	3518400	0	0	0	4794500	4444200	350240	9423	1918	8918	58212;58213	78619;78620	78620	1924		2	
DTGNFVIGQILSDQSR	0	Unmodified	1748.8693	0.86932676	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.25	0.433	3	1								1		2	1	91.579	91.056	2	0.00028654	82964	160511_QHF_FH_JSI11i_1	94.023	80.361			0.60286	0.57827	18.258	3	2	Plateau	1.0091	0.82379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60286	0.57827	NaN	1	0	Median	0.62458	0.63837	NaN	1	1	Median	77741000	41938000	35803000	14818000	5907000	8911000	0	0	0	31445000	18267000	13178000	31477000	17764000	13714000	9424	940	8919	58214;58215;58216;58217	78621;78622;78623;78624;78625	78622			5	
DTGQLYAALHHR	0	Unmodified	1380.6898	0.68984625	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			5							1		2	2	40.359	39.781	2;3	7.9213E-05	33928	160511_QHF_FH_JSI12i_3	85.533	64.085			0.30367	0.29222	20.822	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2745	0.25221	NaN	1	0	Median	0.33593	0.33858	NaN	1	1	Median	169310000	118840000	50466000	16201000	0	16201000	0	0	0	69483000	57470000	12014000	83625000	61373000	22252000	9425	4759	8920	58218;58219;58220;58221;58222	78626;78627;78628;78629;78630	78630			4	
DTGVMVK	1	Unmodified	748.37893	0.37892537	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				18.751	17.652	2	0.039594	14684	160511_QHF_FH_JSI9i_1	49.59	32.663			0.13227	0.10817	NaN	1	1	Median	0.13227	0.10817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38514000	32297000	6216700	38514000	32297000	6216700	0	0	0	0	0	0	0	0	0	9426	3709	8921	58223	78631	78631			1	
DTGVQGVMSAEGNLHNPALFEGR	0	Unmodified	2398.1336	0.13355673	3097	Q6P1R4	DUS1L	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.757	74.513	3	0.0075571	64372	160511_QHF_FH_JSI12i_2	33.074	24.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9427	3097	8922	58224	78632	78632			1	
DTHDQLSEPSEVR	0	Unmodified	1511.6852	0.68521439	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	23.112	22.876	2;3	0.0001027	20061	160511_QHF_FH_JSI10i_1	92.943	78.736			0.75726	0.89775	26.896	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71487	0.83947	9.4921	2	0	Median	1.4201	1.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	181440000	88862000	92582000	0	0	0	112790000	58758000	54036000	68651000	30105000	38547000	0	0	0	9428	2636	8923	58225;58226;58227;58228;58229;58230	78633;78634;78635;78636;78637;78638;78639	78637			7	
DTHKSEIAHR	1	Acetyl (K)	1234.6054	0.60544792	50	CON__P02769			yes	yes	1	0	0	1		By matching	By MS/MS		15.3	0.471								2	1		1	2		14.995	5.6066	3	0.0005395	5910	160513_QHF_FH_JSI11Kac_5	76.332	66.677		+	0.7129	0.76244	128.62	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6441	1.8932	NaN	1	0	Median	0.30912	0.30705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5934900	4061800	1873100	0	0	0	1355300	570250	785050	4579600	3491500	1088100	0	0	0	9429	50	8924	58231;58232;58233	78640;78641	78641	19		2	
DTHPKFPAGGK	2	Acetyl (K)	1195.5986	0.59857163	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	32.09	22.794	2;3	0.00060641	14517	160513_QHF_FH_JSI11Kac_4	71.555	64.667			0.51602	0.56831	79.086	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1152	1.3267	2.5857	2	0	Median	0.27945	0.27331	5.136	2	0	Median	0.51602	0.56831	NaN	1	0	Median	89891000	57077000	32814000	0	0	0	22509000	9914500	12594000	56353000	39854000	16499000	11029000	7308100	3720800	9430	764	8925	58234;58235;58236;58237;58238	78642;78643;78644;78645;78646;78647	78646	374		6	
DTIEEHR	0	Unmodified	898.41446	0.41445926	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	1	3	2	8.6416	8.3395	2;3	0.0080992	3456	160511_QHF_FH_JSI11i_1	73.616	38.724			0.83741	0.89399	153.15	4	1	Median	NaN	NaN	NaN	0	0	Median	0.64968	0.7877	NaN	1	0	Median	4.1067	4.0049	214.8	2	1	Median	0.80506	0.91137	NaN	1	0	Median	371960000	107190000	264770000	0	0	0	55364000	32943000	22421000	265860000	43915000	221950000	50736000	30330000	20406000	9431	1226	8926	58239;58240;58241;58242;58243;58244;58245	78648;78649;78650;78651;78652;78653;78654	78649			7	
DTIEKLK	2	Acetyl (K)	887.4964	0.49639797	2045	P63000;P15153	RAC1;RAC2	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2	yes	no	1	0	0	1			By MS/MS		13	0						1						1		41.407	32.288	2	0.021444	18419	160513_QHF_FH_JSI11Kac_3	81.784	7.3687			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2713300	2713300	0	0	0	0	0	0	0	2713300	2713300	0	0	0	0	9432	2045	8927	58246	78655	78655	2110		1	
DTIIDVVGAPLTPNSR	0	Unmodified	1666.889	0.88899957	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	85.277	85.137	2	3.2691E-07	77320	160511_QHF_FH_JSI12i_1	93.011	50.616			0.75825	0.84735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75825	0.84735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20176000	14029000	6147100	0	0	0	20176000	14029000	6147100	0	0	0	0	0	0	9433	4900	8928	58247;58248	78656;78657	78656			2	
DTILAELLQIHK	1	Unmodified	1392.7977	0.79766537	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2.4	0.49		3	2								1	2	2	101.07	101	3	4.285E-08	90070	160511_QHF_FH_JSI11i_3	124.1	109.85			1.0203	0.9764	20.328	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1307	1.3425	NaN	1	0	Median	0.88321	0.86283	16.107	2	0	Median	0.97316	1.0376	8.6005	2	0	Median	94328000	50642000	43686000	0	0	0	15520000	7618700	7901400	48640000	28497000	20142000	30168000	14526000	15642000	9434	1581	8929	58249;58250;58251;58252;58253	78658;78659	78658			2	
DTILHDNLK	1	Unmodified	1067.5611	0.56112349	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	31.842	30.986	3	0.008329	26219	160511_QHF_FH_JSI12i_2	33.961	24.603			0.86691	0.92587	22.379	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0471	1.0846	NaN	1	0	Median	0.71772	0.79036	NaN	1	0	Median	55432000	32577000	22855000	0	0	0	0	0	0	35604000	20180000	15423000	19829000	12397000	7432000	9435	2531	8930	58254;58255	78660	78660			1	
DTILQLNLK	1	Unmodified	1056.6179	0.61791009	1330;1697	P29992;P50148	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	71.572	71.163	2	0.00010813	64553	160511_QHF_FH_JSI10i_1	111.01	92.972			1.7478	1.8712	16.108	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4913	1.6697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0485	2.0969	NaN	1	1	Median	45038000	13862000	31176000	0	0	0	18406000	5403800	13002000	0	0	0	26632000	8458100	18173000	9436	1330;1697	8931	58256;58257	78661;78662	78662			2	
DTILQTVDLVSQETGEK	1	Unmodified	1874.9473	0.94730231	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	93.869	93.402	3	4.9878E-08	84890	160511_QHF_FH_JSI11i_1	98.507	73.34			0.95427	1.0075	6.9785	3	2	Plateau	1.1366	0.92704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0942	1.0649	NaN	1	1	Median	0.95427	1.0075	NaN	1	0	Median	106710000	62516000	44196000	34628000	21897000	12731000	0	0	0	34350000	18882000	15468000	37733000	21736000	15997000	9437	4673	8932	58258;58259;58260;58261;58262	78663;78664;78665;78666;78667;78668	78664			6	
DTINTSCDIELLAACR	0	Unmodified	1850.8502	0.85024758	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.012	71.728	3	0.023708	38533	160513_QHF_FH_JSI9Kac_6	30.133	14.609			0.92113	0.88473	148.71	4	1	Median	0.83363	0.72422	NaN	1	0	Median	1.0882	1.2574	NaN	1	0	Median	0.05536	0.052722	NaN	1	1	Median	1.0178	1.0808	NaN	1	0	Median	572560000	323670000	248890000	277340000	167700000	109640000	179360000	72138000	107230000	49835000	46331000	3503400	66018000	37498000	28520000	9438	5420	8933	58263;58264;58265;58266	78669;78670;78671;78672	78670			4	
DTIVENIQK	1	Unmodified	1058.5608	0.56078914	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	2	3	2	36.144	35.625	2	9.5205E-06	32269	160511_QHF_FH_JSI12i_1	128.61	51.55			0.57762	0.52084	84.696	7	7	Median	0.57762	0.48929	NaN	1	1	Median	0.75095	0.8945	102.13	2	2	Median	1.083	1.0168	147.44	2	2	Median	0.9033	0.93895	83.342	2	2	Median	397500000	216650000	180850000	31084000	17426000	13658000	114240000	63784000	50455000	134690000	65465000	69228000	117480000	69975000	47505000	9439	940	8934	58267;58268;58269;58270;58271;58272;58273;58274	78673;78674;78675;78676;78677;78678;78679;78680	78676			8	
DTLAFLMIHLQR	0	Unmodified	1456.7861	0.78605483	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			88.161	82.442	3	6.2522E-10	44503	160513_QHF_FH_JSI9Kac_6	93.839	74			0.78441	0.94093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78441	0.94093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40610000	19290000	21320000	0	0	0	40610000	19290000	21320000	0	0	0	0	0	0	9440	4634	8935	58275;58276	78681;78682;78683	78681			3	
DTLDYSSNTMESALQYEK	1	Unmodified	2093.9099	0.90993053	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	71.082	70.539	2	9.6356E-184	64189	160511_QHF_FH_JSI11i_1	316.67	292.42			1.3418	1.2087	15.761	5	2	Median	1.4351	1.1698	NaN	1	0	Median	1.0164	1.2087	NaN	1	0	Median	1.3418	1.2539	NaN	1	0	Median	1.2551	1.2826	30.48	2	2	Median	325850000	143110000	182730000	58732000	23861000	34870000	63520000	32196000	31323000	67371000	33224000	34147000	136230000	53832000	82393000	9441	1665	8936	58277;58278;58279;58280;58281	78684;78685;78686;78687;78688;78689;78690;78691	78685			8	
DTLENTIGHR	0	Unmodified	1154.568	0.56799978	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.6	7	11					3	3		6	7	5	6	27.789	24.456	2;3	1.308E-33	20577	160511_QHF_FH_JSI11i_2	197.66	178.88			1.0635	1.1353	27.961	20	9	Median	1.5062	1.2659	27.617	4	3	Median	0.83976	0.991	40.67	6	1	Median	1.0558	1.0575	17.698	4	1	Median	1.2342	1.291	19.368	6	4	Median	2170000000	1034600000	1135400000	376880000	162720000	214170000	511370000	259920000	251450000	800900000	375400000	425510000	480840000	236520000	244320000	9442	1525	8937	58282;58283;58284;58285;58286;58287;58288;58289;58290;58291;58292;58293;58294;58295;58296;58297;58298;58299;58300;58301;58302;58303;58304;58305	78692;78693;78694;78695;78696;78697;78698;78699;78700;78701;78702;78703;78704;78705;78706;78707;78708;78709;78710;78711;78712;78713;78714;78715;78716;78717;78718;78719;78720	78714			29	
DTLGAPK	1	Unmodified	700.37555	0.37555455	2290	Q0VDD8	DNAH14	Dynein heavy chain 14, axonemal	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.687	9.8981	2	0.045762	7356	160511_QHF_FH_JSI9i_1	44.531	2.0566			1.1999	0.97608	NaN	1	0	Median	1.1999	0.97608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	387930000	175000000	212930000	387930000	175000000	212930000	0	0	0	0	0	0	0	0	0	9443	2290	8938	58306	78721	78721			1	
DTLGLFLR	0	Unmodified	933.52837	0.5283668	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.55	3	5					2	5		2	5	3	5	81.23	75.312	2	9.3188E-10	69277	160511_QHF_FH_JSI11i_2	160.03	80.574			1.0201	1.0088	26.62	13	3	Median	1.202	0.99606	1.8019	2	0	Median	0.95623	1.1188	14.271	4	1	Median	1.0201	1.0304	9.7201	3	0	Median	0.76747	0.83122	49.053	4	2	Median	406590000	196350000	210240000	67912000	24463000	43449000	89923000	45605000	44318000	149670000	73988000	75686000	99081000	52292000	46789000	9444	552	8939	58307;58308;58309;58310;58311;58312;58313;58314;58315;58316;58317;58318;58319;58320;58321	78722;78723;78724;78725;78726;78727;78728;78729;78730;78731;78732;78733;78734;78735;78736;78737;78738;78739;78740	78731			19	
DTLGPMQK	1	Oxidation (M)	904.43242	0.43241751	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	1	0			By MS/MS	By MS/MS	9.75	5.07	1				1	2						2	2	16.685	11.052	2	0.0133	19941	160511_QHF_FH_JSI12i_1	81.297	47.558			1.1651	1.1983	34.037	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1084	1.0681	35.439	2	2	Median	1.2954	1.3826	39.418	2	1	Median	98386000	40728000	57658000	0	0	0	0	0	0	6996100	3309400	3686800	91390000	37418000	53971000	9445	570	8940	58322;58323;58324;58325	78741;78742;78743;78744	78741		214	4	
DTLGPMQK	1	Unmodified	888.4375	0.43750288	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	2	1	1	24.625	22.541	2	0.0010623	19263	160511_QHF_FH_JSI9i_1	94.539	68.712			0.91309	0.75578	74.306	5	3	Median	0.91309	0.75578	NaN	1	0	Median	1.8056	2.1611	13.472	2	2	Median	0.66268	0.65542	NaN	1	0	Median	0.40616	0.42161	NaN	1	1	Median	1755200000	874670000	880540000	534050000	194260000	339790000	282440000	117370000	165070000	422070000	280880000	141190000	516650000	282150000	234500000	9446	570	8940	58326;58327;58328;58329;58330	78745;78746;78747;78748;78749	78747			5	
DTLLALHQHGHSGPFESK	1	Unmodified	1972.9755	0.97552317	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.122	43.883	3	5.8661E-06	37451	160511_QHF_FH_JSI12i_3	92.211	66.892			1.0075	0.9964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0075	0.9964	NaN	1	1	Median	43193000	14057000	29136000	0	0	0	0	0	0	0	0	0	43193000	14057000	29136000	9447	3283	8941	58331	78750	78750			1	
DTLPYEELQGLK	1	Unmodified	1404.7137	0.71366097	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	73.628	72.887	2	1.3169E-06	64835	160511_QHF_FH_JSI9i_1	120.68	91.596			0.85169	0.79226	123.07	2	2	Median	0.39748	0.33185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8249	1.8915	NaN	1	1	Median	89231000	47830000	41401000	36346000	27472000	8874300	0	0	0	0	0	0	52885000	20358000	32527000	9448	3716	8942	58332;58333	78751;78752;78753	78753			3	
DTLQSELVGQLYK	1	Unmodified	1492.7773	0.77732386	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.054	81.586	2	5.0719E-82	74087	160511_QHF_FH_JSI10i_1	246.14	170.76			1.103	1.0474	6.3077	4	0	Median	1.1937	0.98919	NaN	1	0	Median	0.84513	0.99433	NaN	1	0	Median	1.1435	1.1089	NaN	1	0	Median	1.0639	1.1033	NaN	1	0	Median	856530000	421730000	434810000	160340000	77530000	82806000	214480000	118930000	95550000	287930000	122710000	165210000	193790000	102550000	91236000	9449	133	8943	58334;58335;58336;58337	78754;78755;78756;78757;78758;78759;78760;78761;78762;78763;78764	78761			11	
DTLSIHYLMLPR	0	Unmodified	1457.7701	0.77007041	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.38		9	4						6	4	4	6	5	80.596	77.924	2;3	4.9749E-40	40724	160513_QHF_FH_JSI10Kac_6	167.3	152.42			1.0217	1.0213	19.627	16	7	Median	1.1347	0.9653	12.104	3	1	Plateau	0.92358	1.1066	12.983	4	2	Median	0.96862	0.95142	9.0294	4	2	Median	1.06	1.2014	29.126	5	2	Median	4211900000	2052200000	2159700000	824910000	465500000	359410000	1515500000	764330000	751170000	879050000	396420000	482630000	992450000	425940000	566510000	9450	1520	8944	58338;58339;58340;58341;58342;58343;58344;58345;58346;58347;58348;58349;58350;58351;58352;58353;58354;58355;58356	78765;78766;78767;78768;78769;78770;78771;78772;78773;78774;78775;78776;78777;78778;78779;78780;78781;78782;78783;78784;78785;78786;78787;78788;78789;78790;78791	78791			27	
DTLSIHYLMLPR	0	Oxidation (M)	1473.765	0.76498503	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.416								2	7	3	2	1	3	78.309	69.199	2;3	1.3125E-08	37720	160513_QHF_FH_JSI11Kac_6	108.56	94.901			1.1576	1.1441	17.482	9	1	Median	1.472	1.2515	15.246	3	0	Median	0.99925	1.1859	22.014	2	0	Median	1.1463	1.0775	NaN	1	0	Median	1.0637	1.1441	23.697	3	1	Median	790060000	381190000	408870000	268030000	110770000	157250000	237490000	130330000	107160000	78035000	32414000	45621000	206510000	107680000	98834000	9451	1520	8944	58357;58358;58359;58360;58361;58362;58363;58364;58365	78792;78793;78794;78795;78796;78797;78798;78799;78800;78801;78802;78803	78793		1195	12	
DTLTYFIYSVK	1	Unmodified	1348.6915	0.69146896	528	O75446	SAP30	Histone deacetylase complex subunit SAP30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	4.33		1					1	5	1	2	3	1	2	90.389	81.666	2	1.9263E-14	41286	160513_QHF_FH_JSI11Kac_5	147.95	100.75			1.0767	0.99328	49.939	7	4	Median	1.8832	1.5969	72.625	2	1	Median	0.76989	0.93973	30.453	3	2	Median	1.0767	1.0703	NaN	1	0	Median	1.6277	1.7919	NaN	1	1	Median	92537000	35620000	56917000	48848000	17028000	31820000	25676000	11129000	14547000	16366000	6800200	9565300	1647700	663210	984490	9452	528	8945	58366;58367;58368;58369;58370;58371;58372;58373	78804;78805;78806;78807;78808;78809;78810;78811;78812;78813;78814;78815	78808			12	
DTLVADNLDQATR	0	Unmodified	1430.7001	0.70013617	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.49	5				2	1				1	2	2	3	52.095	48.494	2	3.1329E-22	44159	160511_QHF_FH_JSI12i_1	205.46	177.72			1.1602	1.0485	19.896	6	1	Median	1.3198	1.0633	NaN	1	0	Median	1.086	1.2359	35.565	2	1	Median	1.2069	1.1636	20.817	2	0	Median	0.98843	1.0338	NaN	1	0	Median	998970000	507780000	491180000	262350000	132830000	129510000	256000000	149770000	106240000	242510000	128400000	114100000	238110000	96778000	141330000	9453	4989	8946	58374;58375;58376;58377;58378;58379;58380;58381	78816;78817;78818;78819;78820;78821;78822;78823;78824;78825;78826	78818			11	
DTLVQGLNEAGDDLEAVAK	1	Unmodified	1956.964	0.96401501	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	93.743	93.432	2;3	2.5176E-82	84717	160511_QHF_FH_JSI10i_1	246.5	228.36			1.2946	1.186	18.781	7	5	Median	1.2946	1.0811	NaN	1	1	Median	0.97189	1.144	1.9782	2	0	Median	1.3843	1.3166	14.772	2	2	Median	1.5884	1.6665	0.19058	2	2	Median	840660000	397850000	442810000	95866000	50436000	45430000	202810000	117920000	84887000	230190000	108760000	121430000	311790000	120730000	191060000	9454	5722	8947	58382;58383;58384;58385;58386;58387;58388	78827;78828;78829;78830;78831;78832;78833;78834	78832			8	
DTLVSYMQTK	1	Unmodified	1184.5747	0.57472465	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	53.875	53.211	2	0.00093461	48441	160511_QHF_FH_JSI12i_1	68.893	25.647			0.91779	0.87341	21.008	4	0	Median	0.92552	0.78075	NaN	1	0	Median	1.0285	1.1698	NaN	1	0	Median	0.77468	0.74304	NaN	1	0	Median	0.91012	0.97707	NaN	1	0	Median	126090000	76162000	49928000	30504000	19452000	11052000	24259000	14247000	10012000	31529000	19167000	12362000	39799000	23296000	16502000	9455	3009	8948	58389;58390;58391;58392	78835;78836;78837	78835			2	
DTLWLTPLHR	0	Unmodified	1250.6772	0.6771563	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		69.834	69.135	3	0.00054503	60479	160511_QHF_FH_JSI11i_2	60.518	56.549			0.67053	0.72172	20.867	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71086	0.83647	NaN	1	1	Median	0.63249	0.62271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18544000	9163600	9380800	0	0	0	6340800	2910700	3430100	12204000	6252900	5950700	0	0	0	9456	3584	8949	58393;58394	78838;78839	78838			2	
DTLYEAVR	0	Unmodified	965.48181	0.48181054	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	6.06	4		2			3	3	1		3	4	3	3	39.653	34.108	2	7.2086E-07	19521	160513_QHF_FH_JSI12Kac_4	139.68	69.412			0.81085	0.85854	35.835	11	3	Median	1.1339	0.93174	11.57	2	0	Median	0.81085	0.95781	66.549	3	1	Plateau	0.88352	0.86746	7.9956	3	2	Plateau	0.88499	0.95013	10.056	3	0	Median	6862500000	3495800000	3366700000	1692000000	849770000	842270000	1684900000	945860000	739050000	1681600000	888490000	793140000	1803900000	811670000	992220000	9457	2036	8950	58395;58396;58397;58398;58399;58400;58401;58402;58403;58404;58405;58406;58407	78840;78841;78842;78843;78844;78845;78846;78847;78848;78849;78850;78851;78852;78853;78854;78855;78856;78857;78858;78859;78860;78861;78862	78861			23	
DTMDAINVLSK	1	Unmodified	1205.5962	0.59618837	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66	65.398	2	6.1453E-06	59544	160511_QHF_FH_JSI11i_1	110.38	51.136			0.9302	0.89597	13.224	4	0	Median	1.083	0.88674	NaN	1	0	Median	0.7666	0.9053	NaN	1	0	Median	0.81614	0.79138	NaN	1	0	Median	1.0602	1.0891	NaN	1	0	Median	404540000	209640000	194900000	92018000	44643000	47375000	96063000	45434000	50629000	104800000	61850000	42953000	111660000	57716000	53941000	9458	4202	8951	58408;58409;58410;58411	78863;78864;78865;78866;78867;78868;78869;78870;78871;78872	78864			10	
DTMDNWDEK	1	Unmodified	1152.4394	0.43935338	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.789	30.509	2	5.6693E-06	27146	160511_QHF_FH_JSI10i_1	114.89	89.158			0.91963	0.9859	8.9009	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78124	0.92576	NaN	1	0	Median	1.0825	1.0499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171460000	88599000	82859000	0	0	0	94843000	50233000	44610000	76615000	38366000	38250000	0	0	0	9459	3754	8952	58412;58413	78873;78874;78875;78876	78875			4	
DTMSDLPEVR	0	Unmodified	1161.5336	0.53358811	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.959	47.277	2	9.9849E-08	42093	160511_QHF_FH_JSI9i_1	122.33	113.91			0.86025	1.0328	2.7452	4	0	Linear	1.2294	1.0263	NaN	1	0	Median	0.8825	1.0216	NaN	1	0	Median	1.0689	1.0393	NaN	1	0	Median	1.0424	1.085	NaN	1	0	Median	363620000	184070000	179550000	86417000	38707000	47710000	100170000	54963000	45204000	87099000	43545000	43554000	89938000	46859000	43078000	9460	1273	8953	58414;58415;58416;58417	78877;78878;78879;78880;78881;78882;78883	78883			7	
DTMSDQALEALSASLGTR	0	Unmodified	1864.8837	0.8836562	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	100.69	100.58	2;3	2.6798E-209	91210	160511_QHF_FH_JSI10i_1	328.14	299.93			1.1115	1.0821	9.1655	8	0	Median	1.2576	1.0362	17.16	2	0	Median	0.86579	1.0106	9.4701	2	0	Median	1.1189	1.0761	0.9767	2	0	Median	1.1109	1.1474	4.4431	2	0	Median	1217400000	629370000	588060000	217120000	100190000	116930000	321540000	181580000	139960000	278730000	142950000	135790000	400030000	204640000	195390000	9461	1181	8954	58418;58419;58420;58421;58422;58423;58424;58425	78884;78885;78886;78887;78888;78889;78890;78891;78892;78893	78889			9	
DTNGENIAESLVAEGLATR	0	Unmodified	1958.9545	0.95451296	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	96.966	96.69	2;3	2.589E-17	85697	160511_QHF_FH_JSI9i_1	224.59	207.38			0.94009	0.95212	6.9948	6	2	Median	1.2787	1.0424	1.4016	2	1	Median	0.77441	0.90383	NaN	1	0	Median	0.93222	0.90112	NaN	1	0	Median	0.91455	0.95212	5.5069	2	1	Median	459820000	222770000	237050000	120240000	56408000	63829000	106480000	62527000	43949000	77236000	30542000	46694000	155870000	73294000	82575000	9462	3213	8955	58426;58427;58428;58429;58430;58431	78894;78895;78896;78897;78898;78899;78900;78901;78902;78903	78903			10	
DTNGENIAESLVAEGLATRR	0	Unmodified	2115.0556	0.055623984	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	86.622	86.15	3	3.1261E-25	76532	160511_QHF_FH_JSI10i_2	171.35	164.94			1.0339	1.0885	7.8023	8	2	Median	1.4638	1.2445	NaN	1	0	Median	0.99711	1.202	1.5819	2	0	Median	1.0707	1.0461	3.3737	2	1	Median	1.0238	1.0902	3.957	3	1	Plateau	848450000	377230000	471210000	323450000	109370000	214070000	255960000	137700000	118260000	135860000	60837000	75021000	133190000	69323000	63862000	9463	3213	8956	58432;58433;58434;58435;58436;58437;58438;58439	78904;78905;78906;78907;78908;78909;78910;78911;78912;78913;78914	78914			11	
DTNGSQFFITTVK	1	Unmodified	1456.7198	0.71980898	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	5.66	8			1	2	8	6	4	2	6	9	8	8	70.313	62.756	2;3	8.2421E-135	61990	160511_QHF_FH_JSI11i_1	285.13	268.46			0.969	0.92895	19.594	28	3	Median	0.97638	0.79923	15.961	6	0	Median	0.76832	0.92211	20.291	8	2	Median	1.0611	1.0444	11.167	7	1	Median	0.9757	1.0617	12.001	7	0	Median	15080000000	7653500000	7426100000	3675400000	1839700000	1835600000	3618900000	1940800000	1678100000	4077900000	1987400000	2090500000	3707600000	1885700000	1821900000	9464	1224	8957	58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456;58457;58458;58459;58460;58461;58462;58463;58464;58465;58466;58467;58468;58469;58470	78915;78916;78917;78918;78919;78920;78921;78922;78923;78924;78925;78926;78927;78928;78929;78930;78931;78932;78933;78934;78935;78936;78937;78938;78939;78940;78941;78942;78943;78944;78945;78946;78947;78948;78949;78950;78951;78952;78953;78954;78955;78956;78957;78958;78959;78960;78961;78962;78963	78916			49	
DTNVMLVALAAK	1	Unmodified	1244.6799	0.67985842	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	3	2	1	83.878	82.043	2	1.9972E-06	38728	160513_QHF_FH_JSI10Kac_4	107.79	94.751			1.6193	1.5781	74.228	7	7	Median	1.8439	1.4692	NaN	1	1	Median	1.3012	1.5781	34.877	3	3	Median	1.5026	1.4503	127.53	2	2	Median	5.2218	5.2616	NaN	1	1	Median	185350000	71184000	114170000	11493000	3999200	7494000	82221000	38240000	43980000	66288000	23128000	43160000	25351000	5816200	19534000	9465	2485	8958	58471;58472;58473;58474;58475;58476;58477	78964;78965;78966;78967;78968;78969;78970	78967			7	
DTNVMLVALAAK	1	Oxidation (M)	1260.6748	0.67477304	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			73.933	63.341	2	0.005619	33750	160513_QHF_FH_JSI10Kac_4	66.435	55.911			0.70256	0.84093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70256	0.84093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4895900	3105900	1789900	0	0	0	4895900	3105900	1789900	0	0	0	0	0	0	9466	2485	8958	58478	78971	78971		1970	1	
DTNVQVLMVLGAGR	0	Oxidation (M)	1487.7766	0.77661235	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			81.41	70.899	2	1.1849E-09	37326	160513_QHF_FH_JSI10Kac_4	124.12	105.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9467	197	8959	58479	78972	78972		82	1	
DTNYTLNTDSLDWALYDHLMDFLADR	0	Unmodified	3117.4026	0.40258053	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.791	94.071	3	1.7004E-94	55304	160513_QHF_FH_JSI10Kac_6	227.51	212.04			0.87101	1.0427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87101	1.0427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	436530000	201530000	235010000	0	0	0	436530000	201530000	235010000	0	0	0	0	0	0	9468	2251	8960	58480	78973	78973			1	
DTPAKNAQK	2	Acetyl (K)	1013.5142	0.5141733	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	11.542	4.2782	2	0.016586	3892	160513_QHF_FH_JSI11Kac_2	56.81	32.855			0.80308	0.83797	19.416	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85252	1.0108	NaN	1	0	Median	0.71274	0.68555	NaN	1	0	Median	0.80308	0.83797	NaN	1	0	Median	51154000	29454000	21699000	0	0	0	16936000	8566600	8369200	18486000	10711000	7775200	15732000	10177000	5555100	9469	857	8961	58481;58482;58483	78974;78975;78976	78974	542		3	
DTPALAR	0	Unmodified	742.39735	0.39735263	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	17.541	16.938	2	0.017438	14306	160511_QHF_FH_JSI10i_1	61.494	14.692			1.3679	1.2722	16.709	3	1	Plateau	1.5275	1.2722	NaN	1	0	Median	1.1037	1.2793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9178	0.95522	NaN	1	1	Median	344230000	163640000	180590000	117230000	53214000	64017000	101370000	56312000	45058000	0	0	0	125630000	54116000	71513000	9470	3290	8962	58484;58485;58486	78977;78978;78979	78978			3	
DTPDEPWAFPAR	0	Unmodified	1400.6361	0.63607935	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			2	2	1	1	68.706	66.387	2	2.915E-07	60454	160511_QHF_FH_JSI10i_1	128.86	102.34			0.99475	1.0384	14.045	6	2	Median	1.1588	0.94505	13.857	2	2	Median	0.92753	1.0768	5.6579	2	0	Median	1.2111	1.198	NaN	1	0	Median	0.79988	0.84919	NaN	1	0	Median	2206700000	1182600000	1024100000	877560000	422820000	454750000	475570000	247330000	228240000	426190000	230550000	195650000	427340000	281910000	145430000	9471	3213	8963	58487;58488;58489;58490;58491;58492	78980;78981;78982;78983;78984;78985;78986;78987;78988;78989;78990	78986			11	
DTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLK	1	Unmodified	3852.8815	0.88149471	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	94.109	93.844	4	7.9807E-32	83746	160511_QHF_FH_JSI11i_3	102.4	100.74			1.0055	0.94936	8.1322	6	0	Median	1.159	0.97993	NaN	1	0	Median	0.75289	0.91917	NaN	1	0	Median	1.0125	0.98294	9.3974	2	0	Median	0.94666	0.98834	14.23	2	0	Median	354740000	193340000	161390000	29277000	13064000	16213000	72608000	36376000	36233000	127990000	69178000	58810000	124860000	74726000	50137000	9472	3788	8964	58493;58494;58495;58496;58497;58498	78991;78992;78993;78994;78995;78996;78997;78998;78999;79000;79001;79002	78992			12	
DTPENNPDTPFDFTPENYK	1	Unmodified	2239.9546	0.95457253	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	4	2	3	75.294	74.854	2;3	1.835E-15	68018	160511_QHF_FH_JSI11i_1	157.75	142			1.148	1.197	28.595	11	11	Median	1.5354	1.2619	40.502	2	2	Median	1.0979	1.3023	41.749	4	4	Median	1.2286	1.1774	7.9225	2	2	Median	1.0999	1.1496	24.104	3	3	Median	538390000	250960000	287430000	91915000	32642000	59274000	191550000	99306000	92242000	136780000	58081000	78703000	118140000	60929000	57212000	9473	1158	8965	58499;58500;58501;58502;58503;58504;58505;58506;58507;58508;58509	79003;79004;79005;79006;79007;79008;79009;79010;79011;79012;79013;79014;79015;79016;79017	79003			15	
DTPGFIVNR	0	Unmodified	1017.5243	0.52434406	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.79	4	4				1	3			2	3	3	4	48.363	44.642	2	1.2143E-06	40811	160511_QHF_FH_JSI12i_1	133.81	117.04			1.0012	1.0458	13.068	10	2	Median	1.1791	0.9845	17.866	2	0	Median	0.92662	1.0959	7.9538	3	1	Plateau	0.9941	0.97425	5.8209	3	1	Median	1.0104	1.0733	19.508	2	0	Median	2080100000	1044400000	1035700000	436850000	184820000	252030000	554270000	318640000	235620000	580370000	269410000	310960000	508640000	271550000	237090000	9474	2770	8966	58510;58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521	79018;79019;79020;79021;79022;79023;79024;79025;79026;79027;79028;79029;79030;79031;79032;79033;79034;79035;79036	79021			19	
DTPGHGSGWAETPR	0	Unmodified	1466.6539	0.65385468	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.287		10	1							3	1	3	4	24.723	24.022	2;3	4.5479E-05	20005	160511_QHF_FH_JSI11i_2	77.593	58.278			0.98695	0.94066	18.482	7	2	Median	1.1666	1.0163	25.243	2	1	Median	0.75095	0.934	NaN	1	0	Median	1.1742	1.1997	21.148	2	1	Median	0.86016	0.89877	6.4432	2	0	Median	294620000	154790000	139820000	43950000	22089000	21862000	48492000	26167000	22325000	106310000	51301000	55013000	95859000	55238000	40622000	9475	542	8967	58522;58523;58524;58525;58526;58527;58528;58529;58530;58531;58532	79037;79038;79039;79040;79041;79042;79043;79044;79045;79046;79047;79048;79049;79050	79046			14	
DTPITHISFHPK	1	Unmodified	1391.7197	0.7197494	3954	Q969X6	CIRH1A	Cirhin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.054	45.813	3	0.0030193	39127	160511_QHF_FH_JSI12i_3	53.448	38.417			1.1647	1.1734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1647	1.1734	NaN	1	1	Median	35791000	14291000	21501000	0	0	0	0	0	0	0	0	0	35791000	14291000	21501000	9476	3954	8968	58533	79051	79051			1	
DTPLYTDNTANGIALLWAPRPFNLR	0	Unmodified	2828.461	0.46096252	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			94.692	88.971	3	9.3979E-27	51204	160513_QHF_FH_JSI10Kac_6	136.14	113.15			1.0649	1.2316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0649	1.2316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86213000	38777000	47435000	0	0	0	86213000	38777000	47435000	0	0	0	0	0	0	9477	3101	8969	58534	79052	79052			1	
DTPQEMEQTR	0	Unmodified	1233.5296	0.52956537	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		17.8	17.68	2	0.0026328	14994	160511_QHF_FH_JSI11i_1	61.56	46.886			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9478	2454	8970	58535	79053	79053			1	
DTPTQEDWLVSVLPEGSR	0	Unmodified	2027.98	0.97999942	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	98.355	98.216	2;3	7.8607E-07	89130	160511_QHF_FH_JSI11i_1	88.282	64.677			0.91908	1.0088	44.511	4	1	Median	NaN	NaN	NaN	0	0	Median	1.148	1.3059	NaN	1	0	Median	0.72201	0.67829	NaN	1	0	Median	1.147	1.1712	57.62	2	1	Median	87440000	39132000	48308000	0	0	0	29808000	12875000	16934000	24102000	11826000	12276000	33530000	14431000	19099000	9479	4930	8971	58536;58537;58538;58539;58540	79054;79055;79056;79057;79058;79059;79060;79061	79055			8	
DTPTSAGPNSFNK	1	Unmodified	1334.6103	0.61025853	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.72	7				4	3				1	5	3	5	31.32	26.057	2	1.8698E-30	23223	160511_QHF_FH_JSI11i_1	184.71	153.48			0.84744	0.9394	44.78	12	5	Median	1.3642	1.1326	NaN	1	0	Median	0.56522	0.66034	62.263	4	2	Median	1.0217	0.9973	30.75	3	0	Median	0.66849	0.70808	48.648	4	3	Median	1526800000	804530000	722260000	326090000	150470000	175620000	358200000	214540000	143660000	330890000	146580000	184310000	511620000	292950000	218670000	9480	3793	8972	58541;58542;58543;58544;58545;58546;58547;58548;58549;58550;58551;58552;58553;58554	79062;79063;79064;79065;79066;79067;79068;79069;79070;79071;79072;79073;79074;79075;79076;79077;79078	79062			17	
DTPTSAGPNSFNKGK	2	Acetyl (K)	1561.7372	0.73724996	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	2	1	42.793	33.828	2	0.0028766	14585	160513_QHF_FH_JSI11Kac_2	66.262	50.997			0.7471	0.80905	29.205	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89419	1.0626	7.2317	2	0	Median	0.61385	0.6081	15.623	2	0	Median	0.7471	0.80905	NaN	1	0	Median	57525000	32666000	24859000	0	0	0	26760000	14053000	12706000	26573000	16058000	10515000	4192300	2554500	1637800	9481	3793	8973	58555;58556;58557;58558;58559	79079;79080;79081;79082;79083;79084;79085	79079	2938;2939		7	
DTQALLSATQAMDLR	0	Unmodified	1632.8141	0.81412007	4526	Q9BXS9	SLC26A6	Solute carrier family 26 member 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	83.971	83.464	2	0.015095	76012	160511_QHF_FH_JSI12i_1	66.498	16.223			5.5538	5.4938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.5538	5.4938	NaN	1	1	Median	12598000	1165300	11433000	0	0	0	0	0	0	0	0	0	12598000	1165300	11433000	9482	4526	8974	58560	79086	79086			1	
DTQDIVHDLESPGIDPSIIK	1	Unmodified	2191.1008	0.10084284	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	93.632	93.134	3	0.0008504	84637	160511_QHF_FH_JSI12i_1	43.12	34.177			1.2455	1.2483	51.328	3	2	Plateau	4.1408	3.4711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3242	2.2482	NaN	1	1	Median	1.2455	1.2483	NaN	1	0	Median	37236000	11580000	25657000	7459900	1160100	6299800	0	0	0	12742000	4050700	8691300	17034000	6368700	10665000	9483	5458	8975	58561;58562;58563	79087;79088;79089	79088			3	
DTQEGIITVK	1	Unmodified	1102.587	0.58700389	5745	Q9Y6N8;Q9ULB4	CDH10;CDH9	Cadherin-10;Cadherin-9	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.4	4.8	4					1				2		2	1	41.778	39.226	2	1.4146E-05	35504	160511_QHF_FH_JSI12i_1	112.71	68.264			0.93473	0.95742	47.415	5	5	Median	1.1084	0.89794	86.062	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1752	1.1405	31.458	2	2	Median	0.9298	0.95742	NaN	1	1	Median	264600000	123480000	141120000	87253000	36823000	50430000	0	0	0	105920000	51964000	53953000	71434000	34694000	36740000	9484	5745	8976	58564;58565;58566;58567;58568	79090;79091;79092;79093;79094	79091			5	
DTQEVPLEK	1	Unmodified	1057.5292	0.52915466	3291;5654;4548	Q7Z739;Q9BYJ9;Q9Y5A9	YTHDF3;YTHDF1;YTHDF2	YTH domain-containing family protein 3;YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	5.39	2				3					1	1	2	1	34.989	28.149	2	1.3279E-05	25393	160511_QHF_FH_JSI11i_1	102.62	69.071			1.6115	1.7207	82.2	4	4	Median	2.7134	2.2404	NaN	1	1	Median	1.3458	1.5593	NaN	1	1	Median	1.9297	1.8989	NaN	1	1	Median	0.35936	0.37293	NaN	1	1	Median	168980000	63504000	105480000	154740000	56403000	98332000	3161200	1436000	1725300	6026400	2532900	3493500	5061600	3132300	1929300	9485	3291;4548;5654	8977	58569;58570;58571;58572;58573	79095;79096;79097;79098;79099	79095			5	
DTQFSYAVFK	1	Unmodified	1204.5764	0.57643921	3944	Q969P0	IGSF8	Immunoglobulin superfamily member 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	4						4			1	2	3	2	73.554	64.874	2	0.00015286	58921	160511_QHF_FH_JSI9i_1	95.358	74.733			1.0157	1.1548	38.356	5	2	Median	NaN	NaN	NaN	0	0	Median	0.84238	0.95508	NaN	1	0	Median	1.0375	0.99173	74.003	2	1	Median	1.0636	1.1738	2.3033	2	1	Median	47672000	18740000	28932000	0	0	0	2504000	1401500	1102500	3754900	2135900	1619000	41413000	15202000	26211000	9486	3944	8978	58574;58575;58576;58577;58578;58579;58580;58581	79100;79101;79102;79103;79104;79105;79106;79107	79106			8	
DTQLQQIVDK	1	Unmodified	1186.6194	0.61936665	2050	P63098	PPP3R1	Calcineurin subunit B type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				2	2	3	3	50.462	47.791	2	7.1232E-07	42281	160511_QHF_FH_JSI9i_1	120.27	103.6			1.3034	1.2656	116.01	8	8	Median	1.2796	1.056	114.13	2	2	Median	2.7167	3.1512	NaN	1	1	Median	0.71894	0.68368	108.39	3	3	Median	0.86335	0.89383	204.69	2	2	Median	696040000	358010000	338030000	198730000	101430000	97308000	103700000	43029000	60668000	218420000	116360000	102050000	175190000	97192000	77999000	9487	2050	8979	58582;58583;58584;58585;58586;58587;58588;58589;58590;58591	79108;79109;79110;79111;79112;79113;79114;79115;79116;79117	79114			10	
DTQSGSLLFIGR	0	Unmodified	1292.6725	0.67246486	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	5.74	4	4			1	5	8	4		8	8	5	5	70.299	62.59	2	5.5814E-148	33451	160513_QHF_FH_JSI10Kac_5	290.48	250.13			1.0424	0.96455	30.494	24	7	Median	1.1082	0.90344	43.667	7	3	Median	0.75991	0.87835	14.449	7	2	Median	1.1452	1.1282	27.125	5	1	Median	1.0493	1.1393	8.0874	5	1	Median	5935900000	2925100000	3010800000	1606200000	715590000	890570000	1687700000	963990000	723740000	1551100000	729610000	821520000	1090900000	515900000	574970000	9488	1706	8980	58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602;58603;58604;58605;58606;58607;58608;58609;58610;58611;58612;58613;58614;58615;58616;58617	79118;79119;79120;79121;79122;79123;79124;79125;79126;79127;79128;79129;79130;79131;79132;79133;79134;79135;79136;79137;79138;79139;79140;79141;79142;79143;79144;79145;79146;79147;79148;79149;79150;79151;79152;79153;79154;79155;79156;79157;79158;79159	79159			42	
DTQSVSAIGEEK	1	Unmodified	1262.599	0.59902514	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	8				2					2	2	3	3	27.971	26.504	2	1.8707E-05	22975	160511_QHF_FH_JSI9i_1	130.01	103.9			0.70743	0.63582	105.63	9	7	Median	1.085	0.88615	59.691	2	2	Median	0.75598	0.87962	170.21	2	2	Median	0.8296	0.80436	157.7	2	1	Median	0.5632	0.63582	124.11	3	2	Median	355800000	186970000	168830000	121140000	70980000	50161000	89860000	43831000	46028000	75061000	40439000	34622000	69738000	31719000	38019000	9489	5058	8981	58618;58619;58620;58621;58622;58623;58624;58625;58626;58627	79160;79161;79162;79163;79164;79165;79166;79167;79168;79169	79167			10	
DTQTSITDSCAVYR	0	Unmodified	1615.7148	0.71479996	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	38.884	38.455	2	2.279E-06	34652	160511_QHF_FH_JSI11i_1	128.85	102.17			0.82327	0.95997	37.277	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1576	1.2838	NaN	1	0	Median	0.74286	0.71779	NaN	1	0	Median	1.4169	1.438	NaN	1	1	Median	63419000	32958000	30461000	0	0	0	19197000	9123300	10074000	25987000	13734000	12253000	18235000	10101000	8133800	9490	5669	8982	58628;58629;58630;58631	79170;79171;79172;79173	79170			4	
DTSASAVAVGLK	1	Unmodified	1117.5979	0.59790293	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	4.52	1		1		3	3	1			1	3	2	3	49.29	41.618	2	7.5311E-19	22049	160513_QHF_FH_JSI10Kac_3	150.35	111.39			0.92237	1.0192	54.209	9	2	Median	3.1982	2.6023	NaN	1	1	Median	0.29153	0.34106	65.846	3	1	Plateau	1.1973	1.1591	36.585	2	0	Median	0.79871	0.86947	19.072	3	0	Plateau	451310000	197380000	253930000	302150000	93354000	208800000	114590000	85537000	29048000	19313000	9750200	9562900	15264000	8740400	6523200	9491	1507	8983	58632;58633;58634;58635;58636;58637;58638;58639;58640	79174;79175;79176;79177;79178;79179;79180	79179			7	
DTSATTALELVAGER	0	Unmodified	1532.7682	0.76821573	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	77.67	77.146	2;3	2.4082E-21	68671	160511_QHF_FH_JSI9i_1	213.38	176.68			0.89053	0.84843	10.016	8	2	Median	1.0999	0.91887	6.914	2	0	Median	0.71419	0.81787	NaN	1	0	Median	0.82517	0.79059	1.4065	2	0	Median	0.86598	0.85512	11.125	3	2	Plateau	706580000	372380000	334190000	157850000	80328000	77517000	35592000	22471000	13120000	211300000	105230000	106080000	301830000	164360000	137480000	9492	679	8984	58641;58642;58643;58644;58645;58646;58647;58648	79181;79182;79183;79184;79185;79186;79187;79188;79189;79190;79191;79192;79193;79194	79194			14	
DTSCLAEQWSGK	1	Unmodified	1380.598	0.59797928	4406	Q9BT09	CNPY3	Protein canopy homolog 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.55	48.135	2	0.0018546	43576	160511_QHF_FH_JSI11i_1	61.435	47.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9493	4406	8985	58649	79195	79195			1	
DTSEAPSSSDEK	1	Unmodified	1251.5103	0.51026971	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11	0				3								2	1	9.1677	1.6571	2	0.0020158	2689	160513_QHF_FH_JSI11Kac_1	76.465	71.681			1.8822	1.8748	88.802	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0255	0.97842	113.81	2	2	Median	1.8822	1.8748	NaN	1	1	Median	3269800	1446700	1823000	0	0	0	0	0	0	2564500	1272500	1292000	705240	174230	531010	9494	5461	8986	58650;58651;58652	79196;79197;79198	79197			3	
DTSEDIEELVEPVAAHGPK	1	Unmodified	2034.9746	0.9745797	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									3	1	1	1	81.085	80.616	2;3	1.0263E-23	71594	160511_QHF_FH_JSI9i_1	138.42	123.73			0.72437	0.79036	11.969	4	2	Median	0.99693	0.84772	NaN	1	0	Median	0.73462	0.8955	NaN	1	0	Median	0.71426	0.69223	NaN	1	1	Median	0.69558	0.73689	NaN	1	1	Median	804850000	425850000	379000000	29003000	12943000	16060000	284430000	131500000	152930000	285370000	166900000	118470000	206040000	114510000	91537000	9495	4272	8987	58653;58654;58655;58656;58657;58658	79199;79200;79201;79202;79203;79204;79205	79204			7	
DTSENADGQSDENKDDYTIPDEYR	1	Unmodified	2776.122	0.12198481	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	1	2	45.497	44.828	2;3	3.7273E-90	40593	160511_QHF_FH_JSI11i_1	240.85	233.66			0.82845	0.87819	12.171	4	0	Median	0.84116	0.69897	NaN	1	0	Median	0.7363	0.88266	NaN	1	0	Median	0.94002	0.91165	NaN	1	0	Median	0.81593	0.87373	NaN	1	0	Median	764510000	468340000	296170000	45489000	26910000	18579000	266100000	179160000	86949000	164670000	79960000	84708000	288250000	182310000	105940000	9496	1556	8988	58659;58660;58661;58662;58663;58664;58665;58666	79206;79207;79208;79209;79210;79211;79212;79213;79214;79215;79216;79217;79218;79219;79220;79221;79222;79223	79208			18	
DTSEYIIQAYK	1	Unmodified	1329.6452	0.64524705	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	5.98	5					6				1	3	3	4	64.324	59.291	2	3.3794E-07	53351	160511_QHF_FH_JSI10i_1	143.7	127.82			0.98549	0.86527	34.727	8	6	Median	0.96516	0.79186	NaN	1	1	Median	0.57607	0.67282	46.777	3	2	Median	0.84988	0.8272	18.9	2	1	Median	1.2252	1.32	17.422	2	2	Median	330360000	168020000	162340000	92708000	40423000	52284000	61266000	40607000	20659000	68003000	37573000	30429000	108380000	49414000	58969000	9497	2592	8989	58667;58668;58669;58670;58671;58672;58673;58674;58675;58676;58677	79224;79225;79226;79227;79228;79229;79230;79231;79232;79233;79234	79229			11	
DTSFEQHVLWHTGGK	1	Unmodified	1740.822	0.82198264	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.98	6.18		24	5						11	11	7	12	10	54.861	51.784	2;3;4	5.2643E-44	26631	160513_QHF_FH_JSI12Kac_6	180.62	167.79			0.94743	0.93164	31.092	33	4	Median	1.3148	1.1144	30.522	8	1	Median	1.1086	1.3418	30.675	6	1	Median	0.84548	0.83538	18.074	11	2	Median	0.78078	0.84843	25.582	8	0	Median	4798800000	2477800000	2321000000	609500000	271400000	338100000	928700000	483010000	445690000	1819200000	967240000	852000000	1441400000	756140000	685230000	9498	1650	8990	58678;58679;58680;58681;58682;58683;58684;58685;58686;58687;58688;58689;58690;58691;58692;58693;58694;58695;58696;58697;58698;58699;58700;58701;58702;58703;58704;58705;58706;58707;58708;58709;58710;58711;58712;58713;58714;58715;58716;58717	79235;79236;79237;79238;79239;79240;79241;79242;79243;79244;79245;79246;79247;79248;79249;79250;79251;79252;79253;79254;79255;79256;79257;79258;79259;79260;79261;79262;79263;79264;79265;79266;79267;79268;79269;79270;79271;79272;79273;79274;79275;79276;79277;79278;79279;79280;79281;79282;79283;79284;79285;79286;79287;79288;79289;79290;79291;79292;79293;79294;79295;79296	79289			59	
DTSISCYK	1	Unmodified	972.42225	0.42224675	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		20.745	20.615	2	0.002353	17781	160511_QHF_FH_JSI11i_1	89.296	30.481			0.18035	0.17316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18035	0.17316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36139000	28713000	7426600	0	0	0	0	0	0	36139000	28713000	7426600	0	0	0	9499	3965	8991	58718;58719	79297;79298	79297			2	
DTSLETR	0	Unmodified	820.39266	0.39266118	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		12.933	5.5941	2	0.026984	5453	160513_QHF_FH_JSI11Kac_3	75.189	6.0136			2.5029	2.4652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5029	2.4652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7990900	2995300	4995500	0	0	0	0	0	0	7990900	2995300	4995500	0	0	0	9500	1381	8992	58720	79299	79299			1	
DTSLETRR	0	Unmodified	976.49377	0.49377221	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	2	0.632	1	3	1							1	2	1	1	8.4481	8.1908	2	0.0047174	6015	160511_QHF_FH_JSI9i_2	68.081	54.409			0.9668	1.0668	25.724	5	0	Median	1.2443	1.0668	NaN	1	0	Median	0.71758	0.85614	45.25	2	0	Median	1.0965	1.1159	NaN	1	0	Median	0.898	0.95422	NaN	1	0	Median	554790000	293950000	260830000	121080000	54144000	66934000	194900000	113620000	81280000	164360000	89912000	74450000	74448000	36278000	38170000	9501	1381	8993	58721;58722;58723;58724;58725	79300	79300			1	
DTSLYRPALEELRR	0	Unmodified	1717.9111	0.911132	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.6	0.49		2	3							4	1			57.355	56.102	3;4	0.00050616	46019	160511_QHF_FH_JSI9i_3	62.042	53.865			0.94303	0.97618	34.848	4	1	Median	1.1181	0.98144	42.392	3	1	Median	0.79539	0.97094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	302280000	163050000	139230000	260330000	132170000	128150000	41949000	30876000	11073000	0	0	0	0	0	0	9502	2370	8994	58726;58727;58728;58729;58730	79301;79302;79303;79304;79305	79301			5	
DTSNDPGQLLR	0	Unmodified	1214.5891	0.58912916	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		39.506	38.874	2	5.9766E-08	34905	160511_QHF_FH_JSI11i_1	125.97	92.172			1.0619	0.97283	21.334	3	0	Median	1.0619	0.86681	NaN	1	0	Median	0.84629	0.97283	NaN	1	0	Median	1.3497	1.3106	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	307340000	139370000	167970000	81221000	33571000	47651000	116760000	58457000	58305000	109350000	47341000	62012000	0	0	0	9503	3988	8995	58731;58732;58733	79306;79307;79308	79306			3	
DTSNHFHVFVGDLSPEITTEDIK	1	Unmodified	2600.2395	0.23946159	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		83.983	83.983	3	0.0016266	74984	160511_QHF_FH_JSI11i_3	43.611	35.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9504	2163	8996	58734	79309	79309			1	
DTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLK	1	Unmodified	3869.9224	0.92243155	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			98.62	92.9	3;4	7.7777E-152	54373	160513_QHF_FH_JSI10Kac_6	253.43	239.2			0.57994	0.69159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57994	0.69159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	925170000	479270000	445900000	0	0	0	925170000	479270000	445900000	0	0	0	0	0	0	9505	4272	8997	58735;58736	79310;79311	79311			2	
DTSSFQEGTVFEVR	0	Unmodified	1600.7369	0.73691561	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		67.034	66.319	2	0.00030535	60303	160511_QHF_FH_JSI11i_1	127.87	88.246			1.3316	1.1663	6.9124	2	2	Median	1.3812	1.1107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2839	1.2248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45312000	19427000	25885000	19877000	9197000	10680000	0	0	0	25435000	10230000	15205000	0	0	0	9506	11	8998	58737;58738	79312;79313	79312			2	
DTSSSTVVSTQR	0	Unmodified	1266.6052	0.60517315	1375	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	16.854	13.557	2	7.5169E-08	6448	160513_QHF_FH_JSI11Kac_2	107.83	107.83			0.88739	0.90376	25.983	7	5	Median	0.69663	0.56867	NaN	1	1	Median	0.81444	0.95938	14.917	2	1	Median	1.0098	0.95852	20.018	2	1	Median	1.0152	1.0715	24.076	2	2	Median	235110000	118400000	116710000	52544000	24310000	28234000	63368000	31748000	31620000	62044000	32273000	29770000	57157000	30070000	27087000	9507	1375	8999	58739;58740;58741;58742;58743;58744;58745	79314;79315;79316;79317;79318;79319;79320;79321;79322	79316			9	
DTSTGHKNK	2	Acetyl (K)	1028.4887	0.48868683	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		2.691	-4.6385	3	0.027094	807	160513_QHF_FH_JSI11Kac_3	41.54	37.968			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1916500	1916500	0	0	0	0	0	0	0	1916500	1916500	0	0	0	0	9508	2094	9000	58746	79323	79323			1	
DTSVEDALER	0	Unmodified	1133.52	0.52004654	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	42.409	39.572	2	1.9527E-09	35659	160511_QHF_FH_JSI10i_1	131.5	88.635			1.0945	1.0459	15.459	4	0	Median	1.3062	1.083	NaN	1	0	Median	1.1551	1.3444	NaN	1	0	Median	1.0113	0.97435	5.0923	2	0	Median	NaN	NaN	NaN	0	0	Median	320970000	162660000	158310000	76589000	31256000	45332000	137630000	75329000	62303000	106750000	56078000	50672000	0	0	0	9509	3960	9001	58747;58748;58749;58750;58751	79324;79325;79326;79327;79328	79326			5	
DTSVEGSEMVPGK	1	Unmodified	1334.6024	0.60239596	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	35.481	34.876	2	5.1357E-23	31351	160511_QHF_FH_JSI12i_1	152.07	118.84			4.2739	4.4859	26.374	4	4	Median	3.9786	3.2198	NaN	1	1	Median	3.8498	4.5048	NaN	1	1	Median	4.5911	4.467	NaN	1	1	Median	5.8531	6.1422	NaN	1	1	Median	1207100000	195870000	1011200000	230490000	41498000	188990000	349320000	52575000	296750000	382800000	58880000	323920000	244510000	42920000	201590000	9510	1145	9002	58752;58753;58754;58755;58756	79329;79330;79331;79332;79333	79331			5	
DTSVLQWR	0	Unmodified	1003.5087	0.50869399	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	1	2	2	55.268	54.578	2	0.00020243	49630	160511_QHF_FH_JSI12i_1	152.63	125.67			0.67254	0.6311	41.625	7	7	Median	0.69538	0.58485	4.7726	2	2	Median	0.54819	0.63802	NaN	1	1	Median	0.77802	0.75313	24.998	2	2	Median	0.99213	1.0179	79.908	2	2	Median	444480000	226470000	218020000	83876000	45830000	38046000	105020000	58978000	46043000	127290000	56831000	70459000	128300000	64831000	63467000	9511	737	9003	58757;58758;58759;58760;58761;58762;58763	79334;79335;79336;79337;79338;79339;79340	79336			7	
DTTALSFFHMLNGAALR	0	Unmodified	1863.9302	0.93015288	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.89		5	1						5	2	1	5	3	97.986	93.707	2;3	2.986E-143	47509	160513_QHF_FH_JSI9Kac_6	311.7	282.8			0.89706	0.88682	64.216	11	4	Median	1.2612	1.0913	43.539	2	1	Median	0.71299	0.88682	NaN	1	0	Median	0.85588	0.87881	90.518	5	2	Median	0.89706	1.0004	31.892	3	1	Median	3423400000	2052100000	1371300000	382360000	169570000	212800000	397830000	235030000	162790000	1867600000	1231100000	636480000	775660000	416400000	359260000	9512	1544	9004	58764;58765;58766;58767;58768;58769;58770;58771;58772;58773;58774	79341;79342;79343;79344;79345;79346;79347;79348;79349;79350;79351;79352	79349			12	
DTTALSFFHMLNGAALR	0	Oxidation (M)	1879.9251	0.9250675	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				86.903	78.284	3	3.3018E-07	43294	160513_QHF_FH_JSI9Kac_6	104.95	78.225			2.2265	1.9049	NaN	1	0	Median	2.2265	1.9049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71004000	32410000	38594000	71004000	32410000	38594000	0	0	0	0	0	0	0	0	0	9513	1544	9004	58775	79353	79353		1212	1	
DTTETDLK	1	Unmodified	921.42911	0.42910627	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		16.227	9.168	2	0.055122	5402	160513_QHF_FH_JSI11Kac_2	50.607	23.082			0.61942	0.61453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61942	0.61453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	788880	511370	277510	0	0	0	0	0	0	788880	511370	277510	0	0	0	9514	15	9005	58776	79354	79354			1	
DTTEVPSSTVEK	1	Unmodified	1291.6143	0.61434085	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.301	24.763	2	0.0004502	21918	160511_QHF_FH_JSI12i_1	86.898	62.122			2.59	2.6709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.59	2.6709	NaN	1	1	Median	34825000	5897900	28927000	0	0	0	0	0	0	0	0	0	34825000	5897900	28927000	9515	261	9006	58777	79355	79355			1	
DTTFAQVLK	1	Unmodified	1021.5444	0.5444108	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	57.193	56.654	2	0.0047989	51303	160511_QHF_FH_JSI11i_1	65.88	50.441			0.23643	0.23826	18.481	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21293	0.20907	NaN	1	1	Median	0.26251	0.27152	NaN	1	1	Median	85648000	61500000	24148000	0	0	0	0	0	0	44248000	30586000	13662000	41401000	30914000	10487000	9516	3854	9007	58778;58779	79356;79357	79356			2	
DTTHNLPEFIVK	1	Unmodified	1412.73	0.72997974	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.983	61.074	3	0.00023811	52609	160511_QHF_FH_JSI12i_2	62.088	59.964			0.80987	1.0269	23.89	4	0	Linear	0.92297	0.78891	NaN	1	0	Median	0.42005	0.51623	NaN	1	0	Median	0.8426	0.85186	NaN	1	0	Median	0.77842	0.84548	NaN	1	0	Median	178280000	91008000	87276000	37766000	19532000	18234000	33602000	22142000	11460000	61627000	30828000	30799000	45289000	18506000	26783000	9517	236	9008	58780;58781;58782;58783	79358;79359;79360	79359			3	
DTTINEIEDTFR	0	Unmodified	1452.6733	0.67325272	2774	Q16864	ATP6V1F	V-type proton ATPase subunit F	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	79.998	79.657	2	2.2253E-07	72412	160511_QHF_FH_JSI10i_1	131.82	118.73			1.0072	1.0757	28.077	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0505	1.229	NaN	1	0	Median	0.74002	0.71689	NaN	1	0	Median	1.0072	1.0757	NaN	1	0	Median	173050000	77616000	95432000	0	0	0	51929000	21472000	30456000	60435000	27799000	32636000	60685000	28345000	32340000	9518	2774	9009	58784;58785;58786	79361;79362;79363;79364;79365	79365			5	
DTTLETALNSK	1	Unmodified	1191.5983	0.59829686	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.304	45.652	2	6.943E-05	41435	160511_QHF_FH_JSI12i_1	101.38	74.266			1.2367	1.268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2367	1.268	NaN	1	1	Median	33908000	17284000	16624000	0	0	0	0	0	0	0	0	0	33908000	17284000	16624000	9519	1736	9010	58787	79366	79366			1	
DTTLETEK	1	Unmodified	935.44476	0.44475633	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		13.52	13.336	2	0.0039821	10987	160511_QHF_FH_JSI10i_1	69.825	21.976			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9520	3063	9011	58788;58789	79367;79368	79368			2	
DTTLFDLSQFGSSNTSHENLQK	1	Unmodified	2468.1456	0.1455612	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.195	80.309	3	4.467E-10	70640	160511_QHF_FH_JSI11i_2	107.33	98.726			0.9108	0.94893	35.193	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2116	1.217	NaN	1	1	Median	0.68468	0.73987	NaN	1	1	Median	47962000	25894000	22068000	0	0	0	0	0	0	25133000	9837100	15296000	22829000	16057000	6772300	9521	1176	9012	58790;58791	79369;79370	79370			2	
DTTLNWK	1	Unmodified	876.43413	0.43413207	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.877	36.285	2	0.0097932	32785	160511_QHF_FH_JSI12i_1	82.386	52.812			0.80354	0.82984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80354	0.82984	NaN	1	1	Median	170740000	72655000	98089000	0	0	0	0	0	0	0	0	0	170740000	72655000	98089000	9522	1241	9013	58792	79371	79371			1	
DTTMYAVSADSK	1	Oxidation (M)	1303.5602	0.56019679	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	1	0			By MS/MS		12	0					1							1		30.27	21.885	2	0.030442	10267	160513_QHF_FH_JSI11Kac_2	53.683	32.176			0.56566	0.55981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56566	0.55981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	895070	566370	328700	0	0	0	0	0	0	895070	566370	328700	0	0	0	9523	2299	9014	58793	79372	79372			1	
DTTPDELLSAVMTAVLK	1	Unmodified	1802.9336	0.9335665	923	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4									2	5	4	104.25	104.17	2;3	4.2147E-06	94861	160511_QHF_FH_JSI11i_1	113.99	98.232			1.0078	0.99493	25.582	11	2	Median	NaN	NaN	NaN	0	0	Median	0.98342	1.133	6.8575	2	1	Median	1.0188	0.98754	27.267	5	1	Median	0.98399	1.055	29.837	4	0	Median	125790000	63777000	62009000	0	0	0	33443000	15207000	18236000	48613000	25486000	23128000	43730000	23085000	20646000	9524	923	9015	58794;58795;58796;58797;58798;58799;58800;58801;58802;58803;58804	79373;79374;79375;79376;79377;79378;79379;79380;79381;79382;79383;79384	79375			12	
DTTPYSSKLLK	2	Acetyl (K)	1293.6816	0.68163256	4100	Q96GX5	MASTL	Serine/threonine-protein kinase greatwall	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	66.138	56.914	2	0.0069304	29414	160513_QHF_FH_JSI12Kac_3	66.435	44.928			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	756700	0	756700	0	0	0	0	0	0	0	0	0	756700	0	756700	9525	4100	9016	58805	79385	79385	3043		1	
DTTQSKPVSSPFPTK	2	Acetyl (K)	1660.8308	0.83081599	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	60.397	51.084	3	0.010211	22800	160513_QHF_FH_JSI12Kac_2	44.807	24.711			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	851830	851830	0	0	0	0	851830	851830	0	0	0	0	0	0	0	9526	5382	9017	58806;58807	79386;79387	79387	3377		2	
DTTSPMELAALEK	1	Unmodified	1404.6806	0.68064628	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		69.517	68.982	2	1.0363E-05	61269	160511_QHF_FH_JSI9i_1	124.42	108.53			0.86231	0.92034	19.908	3	2	Plateau	0.86231	0.7082	NaN	1	0	Median	0.88664	1.0467	NaN	1	1	Median	0.96585	0.92034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	122830000	61540000	61292000	47221000	23471000	23750000	36349000	17359000	18989000	39262000	20709000	18553000	0	0	0	9527	3163	9018	58808;58809;58810	79388;79389;79390;79391	79391			4	
DTTVGTLSQR	0	Unmodified	1076.5462	0.54620171	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	5.65	4				2	5				2	3	3	3	25.364	19.497	2	1.2753E-13	13111	160513_QHF_FH_JSI11Kac_3	145.17	72.688			0.99697	1.0603	42.488	9	1	Median	2.1015	1.6875	92.185	2	0	Median	0.89959	1.0451	4.5896	2	0	Median	1.0629	1.0381	13.622	2	1	Median	0.68484	0.71501	27.993	3	0	Plateau	1698000000	862900000	835090000	459140000	223900000	235240000	385350000	180270000	205090000	386330000	151860000	234460000	467170000	306870000	160300000	9528	1748	9019	58811;58812;58813;58814;58815;58816;58817;58818;58819;58820;58821	79392;79393;79394;79395;79396;79397;79398;79399;79400;79401;79402;79403;79404;79405;79406	79396			15	
DTTVQTLTLQPSVK	1	Unmodified	1529.8301	0.83008771	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1					1	1	1	1	60.383	59.74	2	3.5426E-06	54036	160511_QHF_FH_JSI10i_1	120.86	96.001			0.56334	0.63557	24.126	3	3	Plateau	1.2358	0.99506	NaN	1	1	Median	0.54311	0.61683	NaN	1	1	Median	0.8671	0.82843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67153000	41287000	25865000	19335000	7891100	11444000	25050000	18484000	6566400	22768000	14913000	7855200	0	0	0	9529	15	9020	58822;58823;58824;58825	79407;79408;79409;79410	79408			4	
DTTYLSQSWAALVVLPHIRPLEK	1	Unmodified	2636.4326	0.43262251	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		94.888	87.332	4	7.9146E-12	48674	160513_QHF_FH_JSI11Kac_6	100.76	97.751			0.72586	0.76149	39.797	2	1	Median	NaN	NaN	NaN	0	0	Median	0.47868	0.57471	NaN	1	1	Median	1.1007	1.009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98497000	52418000	46079000	0	0	0	41203000	31333000	9870200	57294000	21085000	36209000	0	0	0	9530	557	9021	58826;58827	79411;79412	79411			2	
DTVATQLSEAVDATR	0	Unmodified	1575.774	0.77402939	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	66.95	66.357	2;3	3.1452E-137	60353	160511_QHF_FH_JSI11i_1	287.13	250.54			1.0282	0.9744	7.6664	8	0	Median	1.2009	0.99654	6.817	2	0	Median	0.74351	0.88406	0.83839	2	0	Median	1.0399	1.0124	2.3575	2	0	Median	0.96332	1.0195	9.4548	2	0	Median	3188700000	1609900000	1578800000	675140000	304910000	370240000	744090000	508230000	235860000	820770000	382500000	438270000	948680000	414230000	534450000	9531	434	9022	58828;58829;58830;58831;58832;58833;58834;58835;58836	79413;79414;79415;79416;79417;79418;79419;79420;79421;79422;79423;79424;79425;79426	79415			14	
DTVDPVQDEMLAR	0	Unmodified	1487.6926	0.69260795	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.891	56.235	2	3.2488E-31	50823	160511_QHF_FH_JSI11i_1	195.27	183.54			1.0048	0.9649	10.861	4	0	Median	1.1952	0.97373	NaN	1	0	Median	0.72258	0.83975	NaN	1	0	Median	0.98411	0.95614	NaN	1	0	Median	1.0259	1.0949	NaN	1	0	Median	1315400000	649110000	666260000	278720000	122730000	155990000	307970000	175030000	132940000	378320000	184580000	193740000	350360000	166780000	183580000	9532	1674	9023	58837;58838;58839;58840	79427;79428;79429;79430;79431;79432;79433;79434	79427			8	
DTVDPVQDEMLAR	0	Oxidation (M)	1503.6875	0.68752257	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	7	6	1					1						1	1	44.404	43.76	2	0.0012019	39749	160511_QHF_FH_JSI12i_1	100.48	85.786			2.0631	2.2041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0631	2.2041	NaN	1	1	Median	22973000	6552000	16421000	0	0	0	0	0	0	0	0	0	22973000	6552000	16421000	9533	1674	9023	58841;58842	79435;79436	79435		1362	2	
DTVILPIK	1	Unmodified	897.55352	0.55351892	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	65.62	62.31	2	0.00055326	56173	160511_QHF_FH_JSI12i_1	104.45	89.672			0.87026	0.93525	22.598	6	0	Median	0.84536	0.69776	NaN	1	0	Median	0.79076	0.90643	NaN	1	0	Median	1.0545	1.0124	27.252	2	0	Median	1.0145	1.0989	18.381	2	0	Median	493900000	244300000	249600000	140530000	65745000	74780000	117210000	67911000	49300000	126810000	61600000	65212000	109350000	49042000	60307000	9534	3605	9024	58843;58844;58845;58846;58847;58848	79437;79438;79439;79440;79441;79442;79443;79444;79445;79446	79440			10	
DTVLEPYADPYYDYEIER	0	Unmodified	2250.0005	0.0004600951	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	84.718	84.466	2	4.5325E-16	76794	160511_QHF_FH_JSI12i_1	116.54	101.15			0.7338	0.78111	26.891	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80875	0.94469	NaN	1	0	Median	0.66579	0.64585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35134000	20480000	14654000	0	0	0	16846000	9489100	7356600	18288000	10991000	7297300	0	0	0	9535	3341	9025	58849;58850;58851;58852;58853	79447;79448;79449;79450;79451	79449			5	
DTVLLRK	1	Unmodified	843.5178	0.51780212	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							1	3	2		21.786	21.087	2	0.001839	17608	160511_QHF_FH_JSI11i_3	138.48	69.387			4.1239	3.6305	60.986	5	5	Median	4.4243	3.6305	NaN	1	1	Median	2.7155	3.2096	63.756	2	2	Median	3.624	3.4007	103.48	2	2	Median	NaN	NaN	NaN	0	0	Median	461210000	159590000	301620000	21603000	3156700	18447000	110700000	54226000	56470000	328910000	102210000	226700000	0	0	0	9536	5119	9026	58854;58855;58856;58857;58858;58859	79452;79453;79454;79455;79456;79457;79458	79452			7	
DTVSEDTIR	0	Unmodified	1034.488	0.48801813	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3.75	4.76	3				1						1	1	2	21.927	19.912	2	0.00056389	17439	160511_QHF_FH_JSI12i_1	78.334	50.228			1.0828	1.1283	5.5219	4	1	Median	NaN	NaN	NaN	0	0	Median	0.98732	1.1417	NaN	1	0	Median	1.094	1.0529	NaN	1	1	Median	1.0839	1.1581	5.3558	2	0	Median	508110000	274370000	233740000	0	0	0	164620000	81585000	83031000	157190000	81586000	75607000	186300000	111200000	75102000	9537	4036	9027	58860;58861;58862;58863	79459;79460;79461	79460			3	
DTVTISGPQAPVFEFVEQLRK	1	Unmodified	2360.2376	0.23761109	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		101.61	101.53	2;3	5.573E-83	90679	160511_QHF_FH_JSI11i_3	275.42	261.39			1.2991	1.2421	9.4669	4	2	Median	1.8142	1.46	NaN	1	0	Median	1.0521	1.2067	NaN	1	0	Median	1.2991	1.2302	5.4385	2	2	Median	NaN	NaN	NaN	0	0	Median	5325200000	2456700000	2868400000	271300000	94069000	177230000	1870000000	937220000	932830000	3183800000	1425500000	1758400000	0	0	0	9538	1650	9028	58864;58865;58866;58867	79462;79463;79464;79465;79466	79462			5	
DTVVVQDLGNIFTR	0	Unmodified	1575.8257	0.82567103	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	97.33	97.025	2	3.4843E-06	88161	160511_QHF_FH_JSI12i_1	127.17	101.79			0.28515	0.28501	135.54	3	3	Plateau	4.1852	3.523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5091	2.3989	NaN	1	1	Median	0.28515	0.28458	NaN	1	1	Median	32893000	16705000	16187000	7157300	1005800	6151500	0	0	0	9234000	2265400	6968600	16501000	13434000	3067200	9539	975	9029	58868;58869;58870	79467;79468;79469;79470	79469			4	
DTVYAVIPAEK	1	Unmodified	1204.634	0.63395408	2965	Q5TC12	ATPAF1	ATP synthase mitochondrial F1 complex assembly factor 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				55.541	54.377	2	0.00059428	48268	160511_QHF_FH_JSI9i_1	84.17	37.764			3.2039	2.593	NaN	1	1	Median	3.2039	2.593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	399590000	80912000	318680000	399590000	80912000	318680000	0	0	0	0	0	0	0	0	0	9540	2965	9030	58871	79471	79471			1	
DTYGVRPLFK	1	Unmodified	1194.6397	0.63970816	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	50.472	49.622	2	0.00044607	43767	160511_QHF_FH_JSI11i_3	103.56	61.454			0.911	0.98137	45.155	4	3	Median	1.8834	1.5351	NaN	1	1	Median	1.1619	1.3052	NaN	1	1	Median	0.61824	0.59547	NaN	1	0	Median	0.71427	0.73789	NaN	1	1	Median	677810000	356450000	321350000	113090000	44813000	68277000	140970000	78139000	62835000	239090000	127230000	111860000	184650000	106270000	78381000	9541	900	9031	58872;58873;58874;58875;58876;58877	79472;79473;79474;79475;79476;79477;79478	79472			7	
DTYIENEK	1	Unmodified	1010.4557	0.45565537	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	17.681	17.441	2	0.00080011	14650	160511_QHF_FH_JSI11i_1	120.46	72.608			0.6317	0.6472	102.25	4	3	Median	NaN	NaN	NaN	0	0	Median	0.30951	0.36776	NaN	1	1	Median	1.0699	1.0507	150.42	2	2	Median	1.0726	1.139	NaN	1	0	Median	1935500000	929800000	1005700000	0	0	0	445960000	251330000	194630000	780710000	376540000	404170000	708830000	301930000	406900000	9542	816	9032	58878;58879;58880;58881	79479;79480;79481;79482;79483	79479			5	
DTYIENEKLISGK	2	Acetyl (K)	1550.7828	0.78280317	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	2	1	68.559	59.103	2	4.7697E-05	30328	160513_QHF_FH_JSI12Kac_3	96.015	84.864			1.3011	1.3989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3011	1.3989	NaN	1	0	Median	7000900	3724000	3276900	0	0	0	3108400	1598800	1509600	2250800	1558000	692860	1641600	567200	1074400	9543	816	9033	58882;58883;58884;58885;58886	79484;79485;79486;79487;79488	79486	462		5	
DTYLLYEGR	0	Unmodified	1128.5451	0.54513908	4396	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	52.781	52.069	2	0.0011085	47006	160511_QHF_FH_JSI10i_1	80.455	74.493			0.38024	0.32987	105.02	6	6	Median	0.88798	0.72373	92.103	2	2	Median	0.77624	0.92242	175.69	2	2	Median	0.30903	0.28838	NaN	1	1	Median	0.25899	0.2738	NaN	1	1	Median	334300000	186220000	148090000	115930000	59868000	56065000	107040000	54968000	52075000	49990000	29579000	20411000	61337000	41800000	19537000	9544	4396	9034	58887;58888;58889;58890;58891;58892	79489;79490;79491;79492;79493;79494	79492			6	
DTYLSHFNPR	0	Unmodified	1248.5887	0.58873523	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							1	4	4	4	43.437	42.785	2;3	5.0257E-10	36645	160511_QHF_FH_JSI12i_2	110.53	94.001			1.118	1.1494	13.241	11	0	Median	1.2749	1.1103	NaN	1	0	Median	0.97667	1.2032	35.024	2	0	Median	1.1738	1.1436	6.8042	4	0	Median	1.1027	1.1523	9.7403	4	0	Median	1678800000	834840000	843960000	105220000	50723000	54499000	322740000	189840000	132890000	645710000	302750000	342960000	605130000	291520000	313610000	9545	1495	9035	58893;58894;58895;58896;58897;58898;58899;58900;58901;58902;58903;58904;58905	79495;79496;79497;79498;79499;79500;79501;79502;79503;79504;79505;79506;79507;79508;79509;79510;79511;79512;79513;79514	79500			20	
DTYLVHLTCSSSK	1	Unmodified	1509.7133	0.71334339	1276	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		57.997	47.13	3	0.054939	25885	160513_QHF_FH_JSI11Kac_5	24.929	18.243			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1490600	0	1490600	0	0	0	0	0	0	1490600	0	1490600	0	0	0	9546	1276	9036	58906	79515	79515			1	
DTYMLSSTVSSK	1	Unmodified	1317.6122	0.61223236	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	48.406	45.95	2	7.0111E-07	40991	160511_QHF_FH_JSI9i_1	104.82	75.157			0.96198	1.0262	102.93	5	5	Median	2.777	2.3208	NaN	1	1	Median	0.88321	1.0262	NaN	1	1	Median	0.43644	0.41926	113.05	2	2	Median	2.3186	2.3622	NaN	1	1	Median	487490000	286240000	201250000	85998000	24503000	61495000	149610000	98157000	51456000	167460000	121010000	46453000	84420000	42578000	41843000	9547	4080	9037	58907;58908;58909;58910;58911;58912	79516;79517;79518;79519;79520;79521	79521			6	
DTYMLSSTVSSK	1	Oxidation (M)	1333.6071	0.60714699	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	1	0			By MS/MS		13	0						2						2		44.525	35.268	2	0.0075391	19934	160513_QHF_FH_JSI11Kac_3	72.006	53.694			1.0771	1.0376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0771	1.0376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1697500	613130	1084400	0	0	0	0	0	0	1697500	613130	1084400	0	0	0	9548	4080	9037	58913;58914	79522;79523	79523		2385	2	
DTYNKLK	2	Acetyl (K)	922.476	0.47599688	1197	P21926	CD9	CD9 antigen	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		31.814	23.215	2	0.029128	14097	160513_QHF_FH_JSI11Kac_3	70.912	18.229			0.26261	0.27958	10.325	2	1	Median	NaN	NaN	NaN	0	0	Median	0.22453	0.25989	NaN	1	1	Median	0.30716	0.30075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10662000	8375000	2286700	0	0	0	1593400	1252800	340560	9068400	7122200	1946200	0	0	0	9549	1197	9038	58915;58916	79524;79525	79524			2	
DTYVSSFPR	0	Unmodified	1070.5033	0.50327426	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.31	5					2	3			2	2	4	2	46.938	42.033	2	5.159E-08	38418	160511_QHF_FH_JSI11i_1	143.89	96.038			0.96114	1.013	12.107	7	0	Median	1.2451	1.013	NaN	1	0	Median	0.87219	1.0168	11.495	2	0	Median	0.98352	0.95487	19.118	2	0	Median	1.0327	1.0813	15.075	2	0	Median	938870000	446170000	492700000	182870000	76036000	106840000	263390000	135280000	128110000	309650000	154050000	155600000	182950000	80804000	102150000	9550	1220	9039	58917;58918;58919;58920;58921;58922;58923;58924;58925;58926	79526;79527;79528;79529;79530;79531;79532;79533;79534;79535;79536;79537;79538;79539	79527			14	
DVAAEAVTGSGK	1	Unmodified	1103.5459	0.54586736	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	25.091	24.553	2	5.7832E-05	21727	160511_QHF_FH_JSI12i_1	108.31	70.501			0.31972	0.32655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31972	0.32655	NaN	1	1	Median	65891000	48633000	17258000	0	0	0	0	0	0	0	0	0	65891000	48633000	17258000	9551	3670	9040	58927;58928	79540;79541	79540			2	
DVAATASK	1	Unmodified	761.39193	0.3919329	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.75	4.76	3				1					1		1	2	7.7874	7.4029	2	0.011405	2932	160513_QHF_FH_JSI12Kac_2	58.981	21.422			0.84471	0.70525	97.443	3	2	Plateau	0.84471	0.70525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.40837	0.39929	NaN	1	1	Median	0.098947	0.10562	NaN	1	1	Median	619460000	476240000	143210000	96614000	42433000	54181000	0	0	0	171790000	119550000	52241000	351050000	314260000	36792000	9552	2899	9041	58929;58930;58931;58932	79542;79543;79544;79545	79545			4	
DVACGANHTLVLDSQK	1	Unmodified	1726.8308	0.83083277	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1									2	2	3	40.077	39.505	2;3	8.0326E-05	35842	160511_QHF_FH_JSI12i_1	100.22	66.337			1.3317	1.4871	65.067	7	7	Median	NaN	NaN	NaN	0	0	Median	0.74624	0.83654	81.361	2	2	Median	0.89275	0.8546	80.391	2	2	Median	2.0008	2.1435	67.907	3	3	Plateau	176610000	86031000	90582000	0	0	0	40669000	25352000	15317000	63767000	33823000	29945000	72177000	26857000	45320000	9553	5200	9042	58933;58934;58935;58936;58937;58938;58939	79546;79547;79548;79549;79550;79551;79552;79553	79549			8	
DVADYKSK	2	Acetyl (K)	966.46583	0.46582612	278	O15347	HMGB3	High mobility group protein B3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12.7	0.471					1	2						2	1	31.706	23.154	2	0.0222	13918	160513_QHF_FH_JSI11Kac_3	65.305	23.857			1.4462	1.3993	421.92	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4462	1.3993	421.92	2	2	Median	NaN	NaN	NaN	0	0	Median	16008000	9437100	6570900	0	0	0	0	0	0	15093000	9437100	5656100	914800	0	914800	9554	278	9043	58940;58941;58942	79554;79555;79556	79554	147		3	
DVAEFLYQVLIDSMGLK	1	Unmodified	1939.9965	0.99650111	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	4	1	2	105.05	99.327	2;3	4.5432E-43	58800	160513_QHF_FH_JSI10Kac_6	232.37	185.53			0.48788	0.5804	27.037	4	4	Median	NaN	NaN	NaN	0	0	Median	0.48788	0.5804	27.037	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	883530000	528260000	355270000	0	0	0	883530000	528260000	355270000	0	0	0	0	0	0	9555	5669	9044	58943;58944;58945;58946;58947;58948;58949;58950	79557;79558;79559;79560;79561;79562;79563;79564	79562			8	
DVAEFLYQVLIDSMGLK	1	Oxidation (M)	1955.9914	0.99141573	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			102.01	96.293	3	2.3719E-05	56908	160513_QHF_FH_JSI10Kac_6	87.287	72.593			1.303	1.4916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.303	1.4916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84481000	32564000	51918000	0	0	0	84481000	32564000	51918000	0	0	0	0	0	0	9556	5669	9044	58951	79565;79566	79566		2728	2	
DVAEQLEK	1	Unmodified	930.46583	0.46582612	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		34.834	25.947	2	0.041288	15415	160513_QHF_FH_JSI11Kac_3	45.68	24.152			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9557	445	9045	58952	79567	79567			1	
DVAFTVGEGEDHDIPIGIDK	1	Unmodified	2126.0168	0.016778861	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	1	2	79.727	79.385	2;3	1.3935E-07	72078	160511_QHF_FH_JSI10i_1	93.494	79.777			0.56628	0.60195	12.537	5	4	Median	NaN	NaN	NaN	0	0	Median	0.4879	0.5728	12.758	2	2	Median	0.59792	0.57301	NaN	1	0	Median	0.63354	0.66505	14.099	2	2	Median	275980000	158560000	117430000	0	0	0	124790000	73545000	51241000	48599000	26327000	22272000	102600000	58683000	43915000	9558	2419	9046	58953;58954;58955;58956;58957;58958	79568;79569;79570;79571;79572;79573;79574	79574			7	
DVAGGLR	0	Unmodified	686.37114	0.37113788	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	20.345	19.835	2	0.0018478	13252	160511_QHF_FH_JSI11i_1	116	47.965			0.90057	0.90756	65.106	8	4	Median	1.4935	1.238	62.897	2	1	Median	0.52731	0.60744	69.088	2	1	Median	0.4936	0.48514	81.44	2	1	Median	1.153	1.1834	30.402	2	1	Median	1345600000	663310000	682310000	334790000	133420000	201370000	324550000	191860000	132690000	325650000	170660000	154990000	360620000	167360000	193260000	9559	5616	9047	58959;58960;58961;58962;58963;58964;58965;58966	79575;79576;79577;79578;79579;79580;79581;79582;79583;79584;79585	79575			11	
DVAHSIIFEVK	1	Unmodified	1256.6765	0.6764876	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.629	65.068	3	0.0068437	56171	160511_QHF_FH_JSI12i_2	42.629	33.44			0.52013	0.50717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52013	0.50717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17748000	12561000	5187000	0	0	0	0	0	0	17748000	12561000	5187000	0	0	0	9560	680	9048	58967;58968	79586;79587	79586			2	
DVAIKEPLVDVVDPK	2	Unmodified	1635.9083	0.90833803	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	73.636	73.034	3	0.00022939	66348	160511_QHF_FH_JSI11i_1	70.197	58.757			0.87736	0.89432	9.4578	7	1	Median	1.1377	0.94299	7.8014	2	0	Median	0.79903	0.95087	8.6718	2	0	Median	0.85952	0.85099	13.069	2	0	Median	0.8163	0.83116	NaN	1	1	Median	524710000	246170000	278540000	105340000	45254000	60087000	162310000	82507000	79805000	172410000	74039000	98374000	84642000	44366000	40277000	9561	4325	9049	58969;58970;58971;58972;58973;58974;58975	79588;79589;79590;79591;79592;79593;79594;79595;79596;79597;79598;79599;79600	79589			13	
DVAKPVIELYK	2	Unmodified	1273.7282	0.72818882	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.263	57.33	3	0.0034832	50668	160511_QHF_FH_JSI10i_2	56.951	42.134			0.40108	0.44722	45.883	4	3	Median	0.21775	0.19122	NaN	1	0	Median	0.33958	0.41262	NaN	1	1	Median	0.48549	0.48471	NaN	1	1	Median	0.4737	0.51685	NaN	1	1	Median	133530000	83885000	49645000	17128000	14833000	2295200	25187000	16212000	8974800	52621000	30436000	22185000	38594000	22404000	16190000	9562	1287	9050	58976;58977;58978;58979	79601;79602;79603;79604	79604			4	
DVALLQGR	0	Unmodified	870.49232	0.49231565	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	43.615	42.953	2	0.0020527	38605	160511_QHF_FH_JSI11i_1	92.467	55.373			5.8927	1.2924	108.92	4	4	Linear	27.22	22.986	NaN	1	1	Median	1.3344	1.5969	NaN	1	1	Median	5.9586	5.6515	NaN	1	1	Median	5.8274	5.9981	NaN	1	1	Median	434370000	142420000	291950000	30307000	1551700	28755000	294500000	111000000	183500000	62625000	13908000	48717000	46932000	15960000	30972000	9563	5436	9051	58980;58981;58982;58983;58984	79605;79606;79607;79608;79609	79605			5	
DVALSVLSK	1	Unmodified	930.5386	0.53859714	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.2	6.37	3						2			1	1	3		63.516	58.733	2	0.014415	52387	160511_QHF_FH_JSI9i_1	55.461	45.231			2.1521	2.1334	27.665	5	5	Median	2.8098	2.2923	NaN	1	1	Median	1.3502	1.5334	NaN	1	1	Median	2.908	2.742	33.011	3	3	Plateau	NaN	NaN	NaN	0	0	Median	69734000	26798000	42935000	16693000	5484700	11208000	25049000	13186000	11863000	27992000	8127400	19864000	0	0	0	9564	1347	9052	58985;58986;58987;58988;58989	79610;79611;79612;79613;79614	79614			5	
DVALVLTVLLEEETLGTSLGLK	1	Unmodified	2312.309	0.3090447	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	11.3	6.6		1							2	1	1		1	105	99.925	3	9.8602E-49	58768	160513_QHF_FH_JSI10Kac_6	188.04	142.44			0.29575	0.34227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.29575	0.34227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105040000	49108000	55935000	3133000	3133000	0	55582000	45975000	9606300	0	0	0	46329000	0	46329000	9565	2906	9053	58990;58991;58992	79615;79616;79617	79617			3	
DVAPQAPVHFLVIPK	1	Unmodified	1629.9243	0.92426287	4510	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.43	3	7	1					3		3	4	5	2	82.054	79.382	2;3	2.2991E-05	72147	160511_QHF_FH_JSI10i_2	97.551	93.399			0.93785	0.95231	17.577	14	1	Median	1.0521	0.89444	13.747	3	0	Median	0.84089	1.0235	25.346	4	1	Median	1.0027	0.97383	11.443	5	0	Median	0.9815	1.0581	18.059	2	0	Median	958710000	477770000	480950000	195620000	97309000	98312000	257770000	128590000	129180000	457310000	226410000	230900000	48011000	25458000	22553000	9566	4510	9054	58993;58994;58995;58996;58997;58998;58999;59000;59001;59002;59003;59004;59005;59006	79618;79619;79620;79621;79622;79623;79624;79625;79626;79627;79628;79629;79630;79631;79632;79633;79634;79635	79633			16	
DVAPSTVK	1	Unmodified	815.43888	0.43888309	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	2	2	2	14.775	14.231	2	0.0062392	11574	160511_QHF_FH_JSI11i_1	71.877	34.784			1.7505	1.8888	95.349	6	6	Median	1.001	0.82561	145.1	2	2	Median	1.6341	1.9417	NaN	1	1	Median	1.8753	1.8373	NaN	1	1	Median	1.1596	1.2378	132.44	2	2	Median	2123200000	964270000	1159000000	614420000	305770000	308650000	415800000	187050000	228750000	391750000	165380000	226370000	701250000	306080000	395170000	9567	1298	9055	59007;59008;59009;59010;59011;59012;59013;59014	79636;79637;79638;79639;79640;79641;79642;79643	79636			8	
DVAQLSR	0	Unmodified	787.41882	0.41881635	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				20.012	18.882	2	0.010478	15893	160511_QHF_FH_JSI9i_1	65.252	33.317			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9568	4024	9056	59015	79644	79644			1	
DVASPLK	1	Unmodified	728.40685	0.40685468	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				26.806	25.548	2	0.036665	22007	160511_QHF_FH_JSI9i_1	50.127	27.107			2.2203	1.9059	NaN	1	1	Median	2.2203	1.9059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36998000	19052000	17946000	36998000	19052000	17946000	0	0	0	0	0	0	0	0	0	9569	2925	9057	59016	79645	79645			1	
DVAVEEFPRK	1	Unmodified	1188.6139	0.61388734	2769	Q16832	DDR2	Discoidin domain-containing receptor 2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				36.48	35.436	3	0.054361	30877	160511_QHF_FH_JSI9i_2	23.012	13.824			0.59297	0.5182	NaN	1	1	Median	0.59297	0.5182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13469000	7738800	5730100	13469000	7738800	5730100	0	0	0	0	0	0	0	0	0	9570	2769	9058	59017	79646	79646			1	
DVAVMQLR	0	Unmodified	930.49569	0.49568646	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	6.09	9	3				1	6			3	6	5	5	52.811	48.688	2	1.0458E-06	44319	160511_QHF_FH_JSI10i_1	154.09	119.2			1.2874	1.2383	125.4	18	18	Median	2.0381	1.6774	168.93	3	3	Median	0.35529	0.41815	128.59	5	5	Median	0.90044	0.91414	117.89	5	5	Median	1.8687	2.0006	134.54	5	5	Median	1994800000	1002900000	991880000	468270000	168900000	299380000	463450000	268670000	194780000	623500000	323940000	299550000	439600000	241430000	198170000	9571	1805	9059	59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034;59035;59036	79647;79648;79649;79650;79651;79652;79653;79654;79655;79656;79657;79658;79659;79660;79661;79662;79663;79664;79665;79666;79667;79668	79658			22	
DVAVSYYHFHR	0	Unmodified	1392.6575	0.65748349	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	1	2	3	4	48.489	39.994	2;3	1.5835E-16	21754	160513_QHF_FH_JSI10Kac_6	137.89	124.09			1.0578	1.1495	34.793	10	3	Median	0.89093	0.7554	NaN	1	1	Median	1.0578	1.2356	2.026	2	0	Median	0.81945	0.85814	35.776	3	1	Median	1.2657	1.3642	35.594	4	1	Median	437430000	216610000	220820000	60701000	34077000	26624000	174470000	93566000	80903000	42615000	21940000	20675000	159650000	67029000	92621000	9572	953	9060	59037;59038;59039;59040;59041;59042;59043;59044;59045;59046	79669;79670;79671;79672;79673;79674;79675;79676;79677;79678;79679;79680;79681;79682;79683;79684	79681			15	
DVAVSYYHFYHMAK	1	Oxidation (M)	1745.7872	0.78717704	1699	P50225;P50226	SULT1A1;SULT1A2	Sulfotransferase 1A1;Sulfotransferase 1A2	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	58.945	49.517	3;4	1.3698E-05	25747	160513_QHF_FH_JSI12Kac_6	98.942	88.661			1.0596	1.1003	27.357	7	1	Median	1.8375	1.5764	6.8869	2	0	Median	1.0596	1.2664	NaN	1	1	Median	0.95547	0.9322	23.443	2	0	Median	0.87331	0.93317	8.5858	2	0	Median	218770000	91511000	127260000	88486000	24307000	64179000	39216000	19077000	20138000	22409000	10044000	12365000	68663000	38082000	30581000	9573	1699	9061	59047;59048;59049;59050;59051;59052;59053	79685;79686;79687;79688;79689;79690;79691;79692;79693;79694;79695;79696;79697	79691		1376	12	
DVAVSYYHFYHMAK	1	Unmodified	1729.7923	0.79226242	1699	P50225;P50226	SULT1A1;SULT1A2	Sulfotransferase 1A1;Sulfotransferase 1A2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	4	4	3	3	67.083	58.256	2;3;4	1.6761E-17	30509	160513_QHF_FH_JSI12Kac_6	142.57	130.88			0.90915	0.94912	20.364	12	4	Median	1.3103	1.1145	10.139	4	2	Median	0.84626	1.0135	26.514	4	2	Median	0.89008	0.85228	2.3006	2	0	Median	0.77655	0.80671	0.19074	2	0	Median	1316100000	572610000	743510000	290560000	87930000	202630000	557730000	289470000	268260000	237020000	92195000	144820000	230810000	103020000	127790000	9574	1699	9061	59054;59055;59056;59057;59058;59059;59060;59061;59062;59063;59064;59065;59066;59067	79698;79699;79700;79701;79702;79703;79704;79705;79706;79707;79708;79709;79710;79711;79712;79713;79714;79715;79716	79708			19	
DVAVVAGGLGR	0	Unmodified	1012.5665	0.56654322	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	50.049	49.265	2	0.00034543	44609	160511_QHF_FH_JSI12i_1	88.948	71.708			0.11438	5.1173	253.71	5	5	Linear	0.90953	0.74706	272.13	2	2	Median	0.047378	0.057166	NaN	1	1	Median	5.5022	5.236	NaN	1	1	Median	14.371	15.231	NaN	1	1	Median	298640000	148780000	149860000	130050000	70786000	59261000	66966000	61976000	4989500	62384000	11479000	50905000	39242000	4541300	34701000	9575	2721	9062	59068;59069;59070;59071;59072	79717;79718;79719;79720;79721	79718			5	
DVAWAPSIGLPTSTIASCSQDGR	0	Unmodified	2388.138	0.1379734	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										1	3	2	93.724	93.432	2;3	1.9316E-06	84978	160511_QHF_FH_JSI11i_1	104.41	93.144			1.0036	0.96104	35.849	6	4	Median	NaN	NaN	NaN	0	0	Median	0.73049	0.83134	NaN	1	0	Median	1.0913	1.0457	12.12	3	2	Median	1.266	1.2979	68.215	2	2	Median	116450000	52460000	63986000	0	0	0	21184000	9446000	11737000	57067000	27129000	29938000	38195000	15885000	22311000	9576	1860	9063	59073;59074;59075;59076;59077;59078	79722;79723;79724;79725;79726;79727;79728;79729	79725			8	
DVAYQYVK	1	Unmodified	984.49165	0.49164694	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	5.13	8		1			3				2	4	3	3	37.155	34.26	2	0.0010236	30230	160511_QHF_FH_JSI9i_1	114.6	103.38			2.1611	2.2525	100.1	11	11	Median	1.2387	1.0164	162.67	2	2	Median	2.1611	2.5579	135.88	3	3	Median	2.2941	2.2525	105.75	3	3	Median	1.9316	2.1237	76.327	3	3	Median	5938300000	2855200000	3083100000	1179400000	538700000	640730000	1426500000	823530000	602980000	1487000000	706000000	781010000	1845400000	787000000	1058400000	9577	2222	9064	59079;59080;59081;59082;59083;59084;59085;59086;59087;59088;59089;59090	79730;79731;79732;79733;79734;79735;79736;79737;79738;79739;79740;79741;79742;79743;79744	79741			15	
DVAYQYVKK	2	Acetyl (K)	1154.5972	0.59717465	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	51.311	41.661	2	0.00016783	23878	160513_QHF_FH_JSI11Kac_4	100.15	81.369			0.055198	0.06281	80.074	4	4	Median	NaN	NaN	NaN	0	0	Median	0.073356	0.086551	NaN	1	1	Median	0.069049	0.06719	130.9	2	2	Median	0.041535	0.045581	NaN	1	1	Median	33885000	32413000	1471500	0	0	0	7614800	7268500	346260	18755000	17880000	875290	7514800	7264800	249960	9578	2222	9065	59091;59092;59093;59094	79745;79746;79747;79748	79746	2337		4	
DVCFHLLK	1	Unmodified	1030.527	0.52698659	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.086	57.582	3	0.0049107	49947	160511_QHF_FH_JSI11i_2	47.082	33.503			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9579	1790	9066	59095	79749	79749			1	
DVCLYPR	0	Unmodified	921.43784	0.43783723	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.262	39.819	2	0.0036275	35782	160511_QHF_FH_JSI11i_1	103.29	90.855			0.2181	0.20509	50.917	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.46395	0.5442	NaN	1	1	Median	0.2181	0.20509	NaN	1	0	Median	0.25506	0.25967	NaN	1	0	Median	191950000	146280000	45677000	0	0	0	72834000	46063000	26771000	63458000	53790000	9668100	55661000	46422000	9238100	9580	375	9067	59096;59097;59098	79750;79751;79752	79750			3	
DVCTELLPLIK	1	Unmodified	1299.7108	0.7108242	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.687	95.284	2	5.7279E-07	86442	160511_QHF_FH_JSI11i_1	113.62	95.803			0.62578	0.53266	26.888	3	0	Median	0.62578	0.51799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56907	0.53266	NaN	1	0	Median	0.81924	0.83631	NaN	1	0	Median	169930000	106680000	63252000	46004000	31415000	14589000	0	0	0	67220000	40765000	26454000	56710000	34502000	22208000	9581	1092	9068	59099;59100;59101;59102	79753;79754;79755;79756;79757	79753			5	
DVCTELLPLIKPQGR	1	Unmodified	1737.9447	0.94474031	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							1	1	4	2	84.944	84.467	2;3	1.5681E-11	75228	160511_QHF_FH_JSI11i_3	115.18	99.974			0.88145	0.84589	23.641	7	0	Median	1.0135	0.85514	NaN	1	0	Median	0.68196	0.82891	NaN	1	0	Median	0.87006	0.78431	8.3833	3	0	Plateau	1.2558	1.3023	10.6	2	0	Median	400860000	208070000	192790000	26778000	12565000	14213000	53904000	33972000	19931000	184780000	100320000	84455000	135400000	61207000	74191000	9582	1092	9069	59103;59104;59105;59106;59107;59108;59109;59110	79758;79759;79760;79761;79762;79763;79764;79765;79766;79767;79768	79758			9	
DVCTFLR	0	Unmodified	909.43784	0.43783723	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	3	2	54.304	53.617	2	0.011144	46410	160511_QHF_FH_JSI11i_2	78.616	58.334			0.75447	0.78353	50.776	9	8	Median	0.93578	0.78882	57.883	2	2	Median	0.49236	0.59845	69.183	3	3	Median	0.78058	0.78558	53.346	2	1	Median	1.1072	1.1475	53.953	2	2	Median	587900000	322420000	265470000	70519000	33146000	37373000	196350000	107010000	89341000	192180000	110490000	81698000	128840000	71781000	57062000	9583	905	9070	59111;59112;59113;59114;59115;59116;59117;59118;59119;59120	79769;79770;79771;79772;79773;79774;79775;79776;79777;79778;79779	79777			11	
DVDAAYMSK	1	Unmodified	998.4379	0.43789681	71;53;82	CON__P08729;CON__Q3KNV1;P08729;CON__Q6NXH9	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.55	5.25	3				2	6					5	3	3	34.802	29.171	2	7.3882E-05	26526	160511_QHF_FH_JSI10i_1	96.034	46.592		+	0.55948	0.56923	135.52	8	7	Median	NaN	NaN	NaN	0	0	Median	0.19606	0.23171	72.874	2	1	Median	0.77142	0.74491	125.52	3	3	Median	6.2916	6.5309	137.38	3	3	Plateau	1584400000	833110000	751240000	0	0	0	484640000	403000000	81636000	570560000	331490000	239070000	529160000	98617000	430540000	9584	53;71;82	9071	59121;59122;59123;59124;59125;59126;59127;59128;59129;59130;59131	79780;79781;79782;79783;79784;79785;79786;79787;79788;79789;79790	79784			11	
DVDAAYMSK	1	Oxidation (M)	1014.4328	0.43281144	71;53;82	CON__P08729;CON__Q3KNV1;P08729;CON__Q6NXH9	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	1	0		By MS/MS			1	0	1										1			30.149	29.824	2	0.010545	26545	160511_QHF_FH_JSI10i_1	73.985	32.956		+	0.093197	0.11064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.093197	0.11064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61175000	55516000	5659100	0	0	0	61175000	55516000	5659100	0	0	0	0	0	0	9585	53;71;82	9071	59132	79791	79791		27	1	
DVDASPSPLSVQDLK	1	Unmodified	1569.7886	0.78861683	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	65.875	65.272	2	7.4673E-08	59403	160511_QHF_FH_JSI11i_1	97.911	74.307			1.2707	1.2508	21.998	4	2	Median	1.7198	1.4041	NaN	1	1	Median	0.82125	0.92371	NaN	1	0	Median	1.5618	1.4902	NaN	1	1	Median	1.0338	1.1143	NaN	1	0	Median	108490000	57191000	51302000	16032000	7099900	8931700	30232000	20491000	9740400	25444000	12285000	13159000	36786000	17315000	19471000	9586	3435	9072	59133;59134;59135;59136;59137	79792;79793;79794;79795;79796;79797;79798	79793			7	
DVDEAYMNK	1	Oxidation (M)	1099.4492	0.44918978	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.71	14				9	6				3	7	10	9	22.432	18.221	2	5.2729E-06	24542	160511_QHF_FH_JSI9i_1	114.28	107.83		+	1.4866	1.462	139.18	27	24	Median	9.123	7.4072	207.14	2	1	Median	1.2813	1.4848	110.19	6	6	Median	0.53626	0.53028	136.58	10	9	Median	2.2563	2.4128	123.37	9	8	Median	2271200000	834790000	1436400000	364230000	55341000	308890000	282480000	125980000	156500000	899890000	414940000	484940000	724620000	238530000	486090000	9587	51	9073	59138;59139;59140;59141;59142;59143;59144;59145;59146;59147;59148;59149;59150;59151;59152;59153;59154;59155;59156;59157;59158;59159;59160;59161;59162;59163;59164;59165;59166	79799;79800;79801;79802;79803;79804;79805;79806;79807;79808;79809;79810;79811;79812;79813;79814;79815;79816;79817;79818;79819;79820;79821;79822;79823;79824;79825;79826	79819		16	28	
DVDEAYMNK	1	Unmodified	1083.4543	0.45427516	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	5.78	6	1			2	7				2	6	3	5	31.427	25.894	1;2	3.1184E-16	25244	160511_QHF_FH_JSI10i_1	193.96	180.93		+	0.31593	0.35055	144.63	15	14	Median	0.55935	0.44939	105.59	2	1	Median	0.31173	0.37043	128.49	6	6	Median	0.21337	0.20992	8.1221	2	2	Median	2.8233	3.0912	184.91	5	5	Median	8414600000	5072700000	3341900000	1378400000	885460000	492930000	2352400000	1699700000	652750000	1349600000	859790000	489770000	3334300000	1627800000	1706500000	9588	51	9073	59167;59168;59169;59170;59171;59172;59173;59174;59175;59176;59177;59178;59179;59180;59181;59182	79827;79828;79829;79830;79831;79832;79833;79834;79835;79836;79837;79838;79839;79840;79841;79842;79843;79844;79845;79846	79837			20	
DVDEIEAWISEK	1	Unmodified	1432.6722	0.67219008	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	97.124	96.881	2	0.0005309	87911	160511_QHF_FH_JSI12i_1	84.687	69.058			1.9016	1.8834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9016	1.8834	NaN	1	1	Median	12855000	5245800	7609500	0	0	0	0	0	0	0	0	0	12855000	5245800	7609500	9589	2470	9074	59183	79847	79847			1	
DVDELPSLQPSVGSPSRPSSSR	0	Unmodified	2296.1295	0.12951721	381	O43815	STRN	Striatin	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				59.946	58.973	3	0.042882	51821	160511_QHF_FH_JSI9i_2	27.72	18.304			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10519000	0	10519000	10519000	0	10519000	0	0	0	0	0	0	0	0	0	9590	381	9075	59184	79848;79849	79848			2	
DVDETGITVASLER	0	Unmodified	1503.7417	0.74166663	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.4	4.8	4					1				2	1		2	65.338	64.667	2	4.9815E-05	58836	160511_QHF_FH_JSI12i_1	155.99	137.73			0.33154	0.75805	47.981	3	3	Plateau	0.91014	0.75805	NaN	1	1	Median	0.31788	0.37912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90811	0.95264	NaN	1	1	Median	491300000	299230000	192070000	143040000	93534000	49508000	187720000	141010000	46703000	0	0	0	160540000	64685000	95858000	9591	3754	9076	59185;59186;59187;59188;59189	79850;79851;79852;79853;79854;79855	79850			6	
DVDFEGTDEPIFGK	1	Unmodified	1567.7042	0.70421849	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.042	75.547	2	3.2408E-21	68665	160511_QHF_FH_JSI10i_1	170.52	144.4			0.96255	0.82791	23.729	5	2	Median	0.99512	0.82791	NaN	1	0	Median	0.67269	0.78368	NaN	1	0	Median	0.96255	0.93257	NaN	1	0	Median	0.91083	0.94333	44.173	2	2	Median	361520000	198140000	163370000	45000000	24016000	20985000	68902000	45257000	23645000	78928000	41230000	37698000	168680000	87640000	81044000	9592	1532	9077	59190;59191;59192;59193;59194	79856;79857;79858;79859;79860;79861;79862	79861			7	
DVDFELIK	1	Unmodified	977.50696	0.50696266	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.144	71.627	2	1.198E-09	65437	160511_QHF_FH_JSI12i_1	157.34	77.874			0.82239	0.84553	8.0549	4	0	Median	1.0291	0.84099	NaN	1	0	Median	0.8182	0.97101	NaN	1	0	Median	0.82661	0.80592	NaN	1	0	Median	0.80124	0.85009	NaN	1	0	Median	2882500000	1487800000	1394700000	604410000	306580000	297830000	744400000	449340000	295070000	811570000	342750000	468820000	722110000	389120000	332990000	9593	1630	9078	59195;59196;59197;59198	79863;79864;79865;79866;79867;79868;79869;79870;79871;79872;79873;79874;79875;79876;79877;79878	79870			16	
DVDGFHVINVGR	0	Unmodified	1326.668	0.66804818	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	1	2	1	60.22	59.698	3	0.0002061	52761	160511_QHF_FH_JSI10i_2	53.034	36.12			1.3699	1.3147	28.49	5	1	Median	1.3699	1.176	NaN	1	0	Median	0.84184	1.0113	NaN	1	0	Median	1.9538	1.8767	11.373	2	1	Median	1.2743	1.3147	NaN	1	0	Median	379080000	160940000	218140000	38782000	10717000	28065000	52857000	35260000	17597000	169980000	66395000	103580000	117460000	48567000	68895000	9594	1047	9079	59199;59200;59201;59202;59203	79879;79880;79881;79882;79883	79882			4	
DVDGLDR	0	Unmodified	788.36645	0.36644643	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			19.525	18.831	2	0.023312	16223	160511_QHF_FH_JSI10i_1	58.782	33.332			0.38432	0.37657	34.341	2	2	Median	0.58206	0.48006	NaN	1	1	Median	0.25376	0.29538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194510000	125120000	69386000	89412000	54969000	34444000	105090000	70152000	34943000	0	0	0	0	0	0	9595	1421	9080	59204;59205	79884;79885	79884			2	
DVDGLTSINAGR	0	Unmodified	1216.6048	0.60477922	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.92	7					5				2	4	3	3	51.577	47.229	2	8.1504E-25	42742	160511_QHF_FH_JSI10i_1	230.06	207.32			0.56981	0.58178	89.513	12	11	Median	1.458	1.1915	124.72	2	2	Median	0.97912	1.1512	99.067	4	3	Median	0.36237	0.35499	84.288	3	3	Plateau	0.5298	0.5862	105.29	3	3	Median	3357600000	1689100000	1668500000	835160000	269350000	565810000	1066100000	573350000	492730000	485900000	274790000	211110000	970490000	571610000	398880000	9596	1004	9081	59206;59207;59208;59209;59210;59211;59212;59213;59214;59215;59216;59217	79886;79887;79888;79889;79890;79891;79892;79893;79894;79895;79896;79897	79892			12	
DVDIIDHHDNTYTVK	1	Unmodified	1783.8377	0.83769228	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								3	1	2	2	47.459	46.474	2	0.00031294	40211	160511_QHF_FH_JSI11i_2	96.103	48.111			0.70587	0.78124	57.814	7	6	Median	1.0559	0.9187	91.24	2	1	Median	0.42558	0.52677	NaN	1	1	Median	0.83059	0.82345	41.039	2	2	Median	1.1341	1.2668	68.361	2	2	Median	231530000	120700000	110830000	51630000	24804000	26827000	24615000	16802000	7813200	104610000	58387000	46224000	50671000	20707000	29964000	9597	1192	9082	59218;59219;59220;59221;59222;59223;59224;59225	79898;79899;79900;79901;79902;79903;79904;79905;79906;79907;79908	79907			11	
DVDLEFLAK	1	Unmodified	1048.5441	0.54407645	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.696	6	1	1							2	2	1	3	79.349	78.866	1;2	6.0307E-12	72013	160511_QHF_FH_JSI12i_1	167.24	148.51			1.2465	1.1373	27.841	7	3	Median	1.3698	1.1373	NaN	1	0	Median	0.98926	1.2195	38.356	2	1	Median	1.0382	1.0063	NaN	1	0	Median	1.4307	1.4722	36.312	3	2	Median	1561200000	779470000	781730000	161770000	70863000	90905000	572580000	302930000	269650000	369120000	181170000	187950000	457720000	224500000	233220000	9598	1846	9083	59226;59227;59228;59229;59230;59231;59232;59233	79909;79910;79911;79912;79913;79914;79915;79916;79917;79918;79919;79920;79921;79922;79923;79924;79925;79926;79927;79928;79929;79930;79931;79932	79915			24	
DVDNALR	0	Unmodified	801.39808	0.39808091	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.152	17.682	2	0.0055551	15253	160511_QHF_FH_JSI12i_1	99.375	54.844			1.3096	1.3747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3096	1.3747	NaN	1	1	Median	244990000	84533000	160450000	0	0	0	0	0	0	0	0	0	244990000	84533000	160450000	9599	5616	9084	59234	79933	79933			1	
DVDPSLSSATAGGSFQDTEK	1	Unmodified	2010.9018	0.90180868	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	55.996	55.083	2	8.2814E-17	50105	160511_QHF_FH_JSI11i_1	122.97	116.88			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19584000	10791000	8792900	8792900	0	8792900	0	0	0	0	0	0	10791000	10791000	0	9600	3405	9085	59235;59236;59237;59238	79934;79935;79936;79937	79935			4	
DVDQETGEDLNPNR	0	Unmodified	1600.6965	0.69650735	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	32.249	31.562	2	8.4005E-05	28300	160511_QHF_FH_JSI10i_1	115.14	89.7			1.3017	1.3409	73.202	4	4	Median	3.558	3.0337	NaN	1	1	Median	0.48423	0.55736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3017	1.3409	41.381	2	2	Median	117360000	46643000	70717000	31607000	8379900	23227000	17332000	11280000	6052100	0	0	0	68420000	26983000	41438000	9601	2544	9086	59239;59240;59241;59242	79938;79939;79940;79941;79942	79941			5	
DVDRIIGLDQVAGMSETALPGAFK	1	Unmodified	2502.2788	0.27882398	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By matching			By MS/MS	2	0		2								1			1	101.31	101.18	3	0.0001406	87013	160511_QHF_FH_JSI12i_2	50.723	42.634			0.61812	0.60583	9.6019	2	0	Median	0.76379	0.64839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50024	0.56607	NaN	1	0	Median	123160000	63318000	59845000	54933000	22842000	32092000	0	0	0	0	0	0	68229000	40476000	27753000	9602	1436	9087	59243;59244	79943	79943			1	
DVDTQEFNLEK	1	Unmodified	1336.6147	0.61467521	3628	Q8NDD1	C1orf131	Uncharacterized protein C1orf131	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.67	53.006	2	0.0040387	48036	160511_QHF_FH_JSI12i_1	55.084	40.966			0.80749	0.87226	5.4683	4	2	Linear	1.0142	0.82565	NaN	1	1	Median	0.73805	0.86633	NaN	1	0	Median	0.8062	0.76821	NaN	1	1	Median	0.80878	0.85841	NaN	1	0	Median	1291300000	707380000	583880000	283800000	136130000	147670000	354200000	204450000	149750000	323000000	190170000	132830000	330270000	176640000	153630000	9603	3628	9088	59245;59246;59247;59248	79944;79945;79946;79947	79945			4	
DVDVYSQILRK	1	Unmodified	1334.7194	0.71941505	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	63.761	62.868	2;3	0.0024177	54027	160511_QHF_FH_JSI12i_2	56.205	51.5			0.50113	0.61312	42.822	3	3	Median	NaN	NaN	NaN	0	0	Median	0.50113	0.61312	NaN	1	1	Median	1.0716	1.063	NaN	1	1	Median	0.42193	0.45733	NaN	1	1	Median	93911000	45368000	48543000	0	0	0	35048000	19247000	15801000	26138000	8135600	18002000	32725000	17985000	14740000	9604	4487	9089	59249;59250;59251	79948;79949;79950	79948			3	
DVDYSDALTEK	1	Unmodified	1254.5616	0.561577	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	47.415	46.379	2	0.00069372	41326	160511_QHF_FH_JSI9i_1	82.261	71.431			1.8628	1.9136	50.988	3	3	Plateau	1.3958	1.166	59.696	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8628	1.9136	NaN	1	1	Median	113680000	44356000	69327000	66162000	30020000	36141000	0	0	0	0	0	0	47521000	14336000	33185000	9605	1736	9090	59252;59253;59254	79951;79952;79953	79953			3	
DVEAPSSNDK	1	Unmodified	1060.4673	0.46728269	248	O15118	NPC1	Niemann-Pick C1 protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			11.579	11.343	2	0.00074128	9110	160511_QHF_FH_JSI10i_1	78.264	57.565			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9606	248	9091	59255	79954	79954			1	
DVEDEETWIR	0	Unmodified	1290.5728	0.57281039	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.946	54.286	2	4.9264E-05	48213	160511_QHF_FH_JSI9i_1	93.111	75.88			1.2938	1.2132	16.962	4	2	Median	1.3724	1.1379	NaN	1	0	Median	0.80459	0.94056	NaN	1	0	Median	1.4147	1.3828	NaN	1	1	Median	1.2197	1.2936	NaN	1	1	Median	203920000	103500000	100420000	45779000	20040000	25739000	57511000	35952000	21559000	55508000	24151000	31357000	45126000	23360000	21766000	9607	2470	9092	59256;59257;59258;59259	79955;79956;79957;79958;79959;79960	79959			6	
DVEDESTGLEK	1	Unmodified	1220.5408	0.54084156	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	5.07	5			4	5					1	6	4	3	30.328	24.665	2	1.3568E-13	11451	160513_QHF_FH_JSI10Kac_2	150.61	135.46			0.70557	0.7232	88.648	14	14	Median	1.3273	1.0467	NaN	1	1	Median	0.64237	0.72278	111.85	6	6	Median	0.70176	0.6764	79.335	4	4	Median	0.92417	0.99082	97.199	3	3	Median	6637300000	3732300000	2904900000	1081600000	515160000	566490000	2738000000	1568600000	1169400000	1148700000	605820000	542870000	1668900000	1042800000	626140000	9608	1464	9093	59260;59261;59262;59263;59264;59265;59266;59267;59268;59269;59270;59271;59272;59273	79961;79962;79963;79964;79965;79966;79967;79968;79969;79970;79971;79972;79973;79974	79967			14	
DVEDESTGLEKIEK	2	Acetyl (K)	1632.773	0.77302634	1464	P36952	SERPINB5	Serpin B5	yes	yes	1	0	0	1				By MS/MS	12	0					2								2	65.945	56.489	2	0.00037295	24986	160513_QHF_FH_JSI12Kac_2	127.37	110.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6280200	3912900	2367300	0	0	0	0	0	0	0	0	0	6280200	3912900	2367300	9609	1464	9094	59274;59275	79975;79976	79975	1449		2	
DVEDFLSPLLGK	1	Unmodified	1331.6973	0.69728262	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	101.99	101.92	2	4.6979E-06	92491	160511_QHF_FH_JSI12i_1	119.53	104.59			0.85781	0.90421	60.024	4	3	Median	NaN	NaN	NaN	0	0	Median	1.3685	1.5894	84.079	2	1	Median	0.8277	0.81063	NaN	1	1	Median	0.88902	0.93217	NaN	1	1	Median	503830000	257110000	246720000	0	0	0	241870000	111640000	130230000	140430000	77592000	62837000	121530000	67877000	53654000	9610	2399	9095	59276;59277;59278;59279	79977;79978;79979;79980	79978			4	
DVEDMFSR	0	Unmodified	997.4175	0.41749572	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.301	50.629	2	0.00024549	45817	160511_QHF_FH_JSI11i_1	116.73	109.57			1.0125	0.98943	62.393	5	2	Median	1.0125	0.81656	NaN	1	0	Median	0.86038	0.98943	NaN	1	0	Median	1.1377	1.1041	NaN	1	0	Median	1.2331	1.3116	118.14	2	2	Median	1473400000	659450000	813980000	236190000	120560000	115630000	317980000	173140000	144840000	362550000	134300000	228240000	556710000	231440000	325260000	9611	2700	9096	59280;59281;59282;59283;59284	79981;79982;79983;79984;79985;79986;79987;79988;79989	79982			9	
DVEEGDEKFE	1	Unmodified	1195.4881	0.48807771	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	3	2	2	32.978	28.326	2	0.00072341	13285	160513_QHF_FH_JSI12Kac_2	93.649	90.24			1.1855	1.0873	90.455	8	8	Median	0.85458	0.70583	NaN	1	1	Median	1.6447	1.8487	125.14	3	3	Median	1.0945	1.0144	70.911	2	2	Median	0.70414	0.73747	121.18	2	2	Median	544910000	283680000	261240000	120650000	51062000	69589000	262490000	129180000	133310000	7185800	3553200	3632700	154590000	99886000	54704000	9612	5569	9097	59285;59286;59287;59288;59289;59290;59291;59292	79990;79991;79992;79993;79994;79995;79996;79997	79997			8	
DVEFEVVGDAPEK	1	Unmodified	1432.6722	0.67219008	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	3	1	1	61.728	61.138	2	4.4152E-10	55364	160511_QHF_FH_JSI12i_1	142.07	103.77			0.89732	0.90133	23.403	5	3	Median	0.84699	0.69143	NaN	1	1	Median	0.67815	0.81084	36.363	2	2	Median	0.91889	0.90133	NaN	1	0	Median	0.97667	1.0299	NaN	1	0	Median	1169400000	628680000	540710000	172190000	74899000	97295000	526660000	310300000	216350000	250140000	122680000	127470000	220390000	120800000	99595000	9613	5254	9098	59293;59294;59295;59296;59297;59298	79998;79999;80000;80001;80002;80003;80004;80005;80006;80007	80000			10	
DVEFLAQLK	1	Unmodified	1061.5757	0.57571092	2088;1619	P78356;P48426	PIP4K2B;PIP4K2A	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	79.514	79.172	2	0.00291	71944	160511_QHF_FH_JSI10i_1	72.485	55.709			0.85128	0.90731	324.38	2	2	Median	NaN	NaN	NaN	0	0	Median	0.083081	0.091539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.7226	8.9931	NaN	1	1	Median	29303000	20709000	8593700	0	0	0	12313000	11436000	876490	8265300	8265300	0	8725400	1008100	7717200	9614	2088;1619	9099	59299;59300;59301	80008;80009;80010	80010			3	
DVEGSTSPQIGDK	1	Unmodified	1331.6205	0.62048887	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	26.004	25.533	2	2.1855E-06	22316	160511_QHF_FH_JSI11i_1	120.77	87.508			1.658	1.6243	82.717	7	7	Median	2.083	1.7078	NaN	1	1	Median	0.80631	0.94632	112.4	2	2	Median	0.86377	0.84945	91.68	2	2	Median	0.76695	0.80216	125.51	2	2	Median	1457400000	814710000	642700000	186100000	88543000	97554000	471720000	292880000	178850000	401710000	230940000	170770000	397880000	202360000	195530000	9615	543	9100	59302;59303;59304;59305;59306;59307;59308	80011;80012;80013;80014;80015;80016;80017	80011			7	
DVEGSTSPQIGDKVEFSISDK	2	Unmodified	2237.0699	0.069936644	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1			By MS/MS	By matching	1	0	2											1	1	64.961	64.424	3	0.016044	58608	160511_QHF_FH_JSI11i_1	48.656	36.174			0.97964	0.97073	3.3096	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99226	0.94827	NaN	1	0	Median	0.96717	0.99371	NaN	1	0	Median	56655000	31178000	25477000	0	0	0	0	0	0	22354000	9931100	12423000	34302000	21247000	13055000	9616	543	9101	59309;59310	80018	80018			0	
DVELLYPVK	1	Unmodified	1074.5961	0.59611202	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.66	7					2	1			2	2	1	5	72.97	70.439	2	0.00014058	64491	160511_QHF_FH_JSI10i_1	107.66	98.719			4.1955	4.3606	147.19	7	7	Median	2.1612	1.7848	184.15	2	2	Median	1.6903	1.9837	245.35	2	2	Median	4.4904	4.3606	NaN	1	1	Median	1.3223	1.3714	163.61	2	2	Median	519510000	227600000	291910000	148450000	56109000	92341000	133510000	69287000	64220000	98767000	23220000	75547000	138790000	78984000	59802000	9617	862	9102	59311;59312;59313;59314;59315;59316;59317;59318;59319;59320	80019;80020;80021;80022;80023;80024;80025;80026;80027;80028;80029	80024			11	
DVEPGILLHGLK	1	Unmodified	1289.7343	0.73433683	890	P08069	IGF1R	Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	74.355	73.471	3	0.0015968	63523	160511_QHF_FH_JSI12i_2	60.49	53.83			0.95716	0.95522	28.267	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.54042	0.63635	NaN	1	1	Median	0.96265	0.95522	NaN	1	0	Median	0.49307	0.55463	NaN	1	1	Median	55234000	30747000	24488000	0	0	0	16673000	8827300	7846200	29308000	15466000	13842000	9253300	6453700	2799600	9618	890	9103	59321;59322;59323	80030;80031;80032	80030			3	
DVEQQFK	1	Unmodified	892.42905	0.42904669	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	24.737	21.54	2	0.0055752	12407	160513_QHF_FH_JSI12Kac_3	76.847	36.743			0.93001	0.84213	16.846	3	3	Plateau	1.0148	0.84213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67369	0.64834	NaN	1	1	Median	0.85231	0.88814	NaN	1	1	Median	375170000	181270000	193910000	201650000	91214000	110430000	0	0	0	7154300	4294200	2860100	166370000	85761000	80614000	9619	2545	9104	59324;59325;59326;59327;59328	80033;80034;80035;80036;80037	80036			5	
DVERDVFLYR	0	Unmodified	1310.6619	0.66190017	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	57.034	56.232	3	3.3816E-08	48751	160511_QHF_FH_JSI11i_2	106.62	96.963			0.89037	0.99559	14.815	5	0	Median	1.3364	1.1457	NaN	1	0	Median	0.80089	0.99559	NaN	1	0	Median	0.89037	0.89344	NaN	1	0	Median	1.0544	1.1195	20.753	2	0	Median	293490000	145790000	147690000	37940000	18387000	19552000	68486000	39491000	28995000	72688000	32296000	40392000	114370000	55620000	58752000	9620	178	9105	59329;59330;59331;59332;59333	80038;80039;80040;80041	80040			4	
DVESDSAK	1	Unmodified	849.37159	0.37159139	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	5.16	4			3	3					2	2	3	3	5.5698	0.93971	2	0.00077183	1700	160513_QHF_FH_JSI10Kac_2	106.04	83.023			1.0679	1.1225	20.938	10	0	Median	1.2064	0.94621	13.646	2	0	Median	1.2396	1.4691	21.343	2	0	Median	1.2155	1.1763	23.608	3	0	Median	1.0173	1.0916	5.7266	3	0	Median	5517000000	2622300000	2894700000	568620000	287580000	281040000	1495300000	627760000	867510000	1676200000	748520000	927690000	1776900000	958420000	818440000	9621	867	9106	59334;59335;59336;59337;59338;59339;59340;59341;59342;59343	80042;80043;80044;80045;80046;80047;80048;80049;80050;80051;80052;80053;80054;80055	80047			14	
DVESPSWR	0	Unmodified	974.44576	0.44575938	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.178	31.939	2	0.0091586	28563	160511_QHF_FH_JSI11i_1	65.246	34.634			1.5182	1.4837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5182	1.4837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86025000	28647000	57378000	0	0	0	0	0	0	86025000	28647000	57378000	0	0	0	9622	100	9107	59344	80056	80056			1	
DVESVMNSVVSLLLILEPDK	1	Unmodified	2199.1708	0.17083666	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.88	100.16	3	4.7115E-45	59397	160513_QHF_FH_JSI10Kac_6	178.77	161.69			1.136	1.3031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.136	1.3031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82930000	40629000	42301000	0	0	0	82930000	40629000	42301000	0	0	0	0	0	0	9623	3222	9108	59345	80057	80057			1	
DVESYIHR	0	Unmodified	1017.488	0.48795855	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.64	2	10	1					1	1	2	3	6	4	34.565	33.83	2;3	1.1808E-09	29771	160511_QHF_FH_JSI10i_2	157.52	129			0.85271	0.83974	29.527	11	3	Median	0.96416	0.83223	0.10957	2	0	Median	0.85271	1.0558	6.5628	3	0	Median	0.84243	0.83418	20.167	4	1	Median	0.87286	0.98668	80.645	2	2	Median	1778600000	976620000	801940000	291340000	160110000	131220000	448790000	293070000	155720000	809680000	401390000	408290000	228760000	122050000	106710000	9624	4940	9109	59346;59347;59348;59349;59350;59351;59352;59353;59354;59355;59356;59357;59358;59359;59360	80058;80059;80060;80061;80062;80063;80064;80065;80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076	80076			19	
DVFAQVR	0	Unmodified	833.43955	0.43955179	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	38.444	38.112	2	0.010359	34628	160511_QHF_FH_JSI12i_1	65.672	48.111			0.9964	1.0721	10.065	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84314	0.99849	NaN	1	0	Median	1.1775	1.1512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117830000	53547000	64282000	0	0	0	62046000	29982000	32064000	55783000	23566000	32217000	0	0	0	9625	3115	9110	59361;59362;59363;59364	80077;80078;80079;80080	80078			4	
DVFASEVTPSDLQK	1	Unmodified	1534.7515	0.75150304	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.771	63.722	2	3.448E-06	56606	160511_QHF_FH_JSI9i_1	131.12	110.33			0.57711	0.48085	NaN	1	1	Median	0.57711	0.48085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118180000	80524000	37660000	118180000	80524000	37660000	0	0	0	0	0	0	0	0	0	9626	3819	9111	59365	80081;80082	80082			2	
DVFEAFYK	1	Unmodified	1017.4807	0.48074791	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	74.995	74.452	2	0.0027493	67737	160511_QHF_FH_JSI11i_1	85.212	57.038			2.5746	2.5346	58.709	5	5	Median	3.1307	2.5346	NaN	1	1	Median	1.2303	1.4666	101.86	2	2	Median	2.746	2.7169	NaN	1	1	Median	1.8889	1.9232	NaN	1	1	Median	418930000	166080000	252850000	69038000	22621000	46417000	160960000	72369000	88594000	102060000	34011000	68046000	86871000	37075000	49796000	9627	2456;2457	9112	59366;59367;59368;59369;59370	80083;80084;80085;80086;80087	80083			5	
DVFEAFYKK	2	Acetyl (K)	1187.5863	0.58627561	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		82.189	71.638	2	0.00027306	37920	160513_QHF_FH_JSI11Kac_5	95.099	75.312			0.5719	0.55934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5719	0.55934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1656100	1105200	550870	0	0	0	0	0	0	1656100	1105200	550870	0	0	0	9628	2456;2457	9113	59371;59372	80088;80089	80089	2485;2487		2	
DVFEAKAR	1	Acetyl (K)	976.49779	0.49779495	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		44.742	34.449	2	0.015117	20644	160513_QHF_FH_JSI11Kac_4	67.464	51.965			0.78819	0.78546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78819	0.78546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18966000	14188000	4777800	0	0	0	0	0	0	18966000	14188000	4777800	0	0	0	9629	1015	9114	59373	80090	80090	820		1	
DVFFYQADDEHYIPR	0	Unmodified	1913.8584	0.85842773	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	1	3	75.24	74.247	2;3	2.4946E-06	63959	160511_QHF_FH_JSI12i_2	146.16	130.62			1.1633	1.2465	22.295	6	3	Median	1.7742	1.4853	NaN	1	0	Median	0.81668	1.0154	NaN	1	1	Median	1.1931	1.1997	NaN	1	0	Median	1.1905	1.3676	28.875	3	2	Plateau	366220000	174550000	191670000	62365000	20856000	41509000	102750000	59063000	43685000	117190000	55584000	61606000	83913000	39048000	44865000	9630	1223	9115	59374;59375;59376;59377;59378;59379	80091;80092;80093;80094;80095;80096	80092			6	
DVFHMVVEVPR	0	Unmodified	1326.6754	0.67544174	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.51		10	8					2	9	7	7	9	6	77.977	74.302	2;3	6.9606E-10	37211	160513_QHF_FH_JSI12Kac_6	123.42	95.215			1.029	0.95191	26.01	27	4	Median	1.1003	0.92224	11.027	7	0	Median	0.66698	0.81979	22.358	6	0	Median	1.0281	1.0012	41.81	8	4	Median	1.0445	1.116	8.5049	6	0	Median	4189200000	2098700000	2090500000	666910000	289660000	377250000	897390000	491110000	406280000	1689900000	831120000	858780000	934970000	486840000	448130000	9631	2641	9116	59380;59381;59382;59383;59384;59385;59386;59387;59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398;59399;59400;59401;59402;59403;59404;59405;59406;59407;59408	80097;80098;80099;80100;80101;80102;80103;80104;80105;80106;80107;80108;80109;80110;80111;80112;80113;80114;80115;80116;80117;80118;80119;80120;80121;80122;80123;80124;80125;80126;80127;80128;80129;80130;80131;80132;80133;80134;80135;80136;80137;80138;80139;80140;80141;80142;80143	80138			47	
DVFHMVVEVPR	0	Oxidation (M)	1342.6704	0.67035637	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.617							2	10	5	4	4	3	6	69.831	59.523	3	5.1914E-05	30079	160513_QHF_FH_JSI10Kac_5	89.266	79.579			1.1146	1.0985	21.311	16	4	Median	1.277	1.0985	8.5021	4	0	Median	0.86294	1.0276	13.2	4	1	Median	1.1154	1.0643	16.923	3	1	Plateau	1.457	1.5961	30.976	5	2	Median	153120000	70728000	82395000	52140000	22460000	29680000	24328000	12616000	11712000	17638000	8741800	8895800	59018000	26910000	32108000	9632	2641	9116	59409;59410;59411;59412;59413;59414;59415;59416;59417;59418;59419;59420;59421;59422;59423;59424;59425	80144;80145;80146;80147;80148;80149;80150;80151;80152;80153;80154;80155;80156;80157;80158;80159;80160;80161	80157		2058	18	
DVFHNHGIHATTIQPEFASVGSK	1	Unmodified	2491.2244	0.22442065	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			9								3	1	5	62.019	61.13	3;4	2.1401E-11	51264	160511_QHF_FH_JSI12i_3	110.6	97.01			1.0375	1.1561	29.292	6	3	Median	NaN	NaN	NaN	0	0	Median	1.0851	1.2417	35.32	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2594	1.3292	27.417	3	2	Median	430350000	186880000	243480000	0	0	0	78570000	45412000	33158000	0	0	0	351780000	141470000	210320000	9633	5739	9117	59426;59427;59428;59429;59430;59431;59432;59433;59434	80162;80163;80164;80165;80166;80167;80168;80169;80170;80171	80168			9	
DVFHTTVNFINQNLR	0	Unmodified	1816.922	0.92203104	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	93.647	93.155	2;3	1.5153E-07	80578	160511_QHF_FH_JSI12i_3	137.62	114.21			1.0476	1.0001	10.36	8	0	Linear	1.5333	1.2716	3.1494	2	0	Median	1.0032	1.145	2.2468	2	0	Median	1.1041	1.0271	0.78227	2	0	Median	0.90163	1.0021	4.2505	2	0	Median	364990000	177020000	187960000	32359000	15543000	16817000	59588000	26746000	32842000	127550000	62346000	65205000	145490000	72388000	73098000	9634	1868	9118	59435;59436;59437;59438;59439;59440;59441;59442	80172;80173;80174;80175;80176;80177;80178;80179;80180;80181;80182	80180			11	
DVFIDSGGVRR	0	Unmodified	1219.6309	0.63093439	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	36.635	36.563	3	0.010127	31981	160511_QHF_FH_JSI11i_3	37.426	12.572			0.79131	0.78191	17.596	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73614	0.69043	NaN	1	0	Median	0.85062	0.88551	NaN	1	0	Median	81760000	42327000	39433000	0	0	0	0	0	0	41445000	22813000	18632000	40315000	19514000	20801000	9635	2952	9119	59443;59444	80183;80184	80183			2	
DVFIIQTVSK	1	Unmodified	1148.6441	0.64412484	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	4.87	3					5	6	4		2	6	4	6	74.234	65.456	2	1.0622E-08	7946	160513_QHF_FH_JSI9Kac_3	143.04	118.26			0.15405	0.18493	213.12	17	16	Median	0.58192	0.47928	119.08	2	1	Median	0.1205	0.14331	220.49	6	6	Median	0.12488	0.12062	246.9	4	4	Median	0.12063	0.13345	262.37	5	5	Median	268340000	184660000	83678000	43649000	19050000	24599000	109720000	81722000	27999000	57818000	41044000	16774000	57147000	42841000	14306000	9636	402	9120	59445;59446;59447;59448;59449;59450;59451;59452;59453;59454;59455;59456;59457;59458;59459;59460;59461;59462	80185;80186;80187;80188;80189;80190;80191;80192;80193;80194;80195;80196;80197;80198;80199;80200;80201;80202;80203	80194			19	
DVFISAAER	0	Unmodified	1006.5084	0.50835964	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	45.02	44.329	2	0.00011395	40003	160511_QHF_FH_JSI11i_1	110.41	64.392			0.92252	0.86115	115.41	6	5	Median	0.69172	0.57476	NaN	1	1	Median	1.5974	1.9672	200.42	2	2	Median	0.92248	0.9179	121.3	2	2	Median	1.2303	1.2902	NaN	1	0	Median	1341000000	639050000	701900000	142310000	80154000	62153000	494330000	212590000	281740000	472510000	208630000	263880000	231800000	137680000	94128000	9637	1177	9121	59463;59464;59465;59466;59467;59468	80204;80205;80206;80207;80208;80209	80204			6	
DVFISAAERDVYTGDALR	0	Unmodified	1996.9854	0.98541915	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.553	1	8	3							2	2	4	4	77.955	77.331	2;3	7.2799E-24	68822	160511_QHF_FH_JSI10i_2	182.07	168.23			0.99815	1.0463	45.519	12	2	Median	1.2587	1.0971	8.3601	2	0	Median	0.86887	1.0659	5.5681	2	0	Median	1.0751	1.0939	79.902	4	1	Median	0.93138	1.0139	23.32	4	1	Median	1638600000	705600000	932990000	246180000	77522000	168660000	338490000	164230000	174270000	461220000	223200000	238010000	592710000	240650000	352060000	9638	1177	9122	59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480	80210;80211;80212;80213;80214;80215;80216;80217;80218;80219;80220;80221;80222;80223;80224;80225;80226;80227;80228;80229	80225			20	
DVFLAWVASR	0	Unmodified	1162.6135	0.61349341	613	O94842	TOX4	TOX high mobility group box family member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.17	6.84		2	1						3		1	3	2	91.993	87.764	2	6.3691E-12	46568	160513_QHF_FH_JSI10Kac_6	150.62	117.78			1.1268	1.2022	88.999	6	4	Median	NaN	NaN	NaN	0	0	Median	0.83605	1.0116	NaN	1	0	Median	1.5186	1.4288	126.19	3	2	Median	1.1915	1.2617	85.9	2	2	Median	221680000	98278000	123410000	0	0	0	64393000	34175000	30218000	93658000	34103000	59555000	63632000	29999000	33633000	9639	613	9123	59481;59482;59483;59484;59485;59486	80230;80231;80232;80233;80234;80235;80236;80237	80237			8	
DVFLMLK	1	Unmodified	864.47791	0.47791114	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		82.944	82.332	2	0.025293	72486	160511_QHF_FH_JSI11i_2	57.463	47.714			16.956	16.524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16.956	16.524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6321300	471050	5850200	0	0	0	0	0	0	6321300	471050	5850200	0	0	0	9640	95	9124	59487	80238	80238			1	
DVFLPKPTWGNHTPIFR	1	Acetyl (K)	2066.0738	0.073780651	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.876	78.604	3	1.5822E-12	41793	160513_QHF_FH_JSI12Kac_6	132.64	111.41			0.66623	1.1209	23.384	3	0	Plateau	1.2913	1.1209	NaN	1	0	Median	0.66292	0.78633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1426	1.2227	NaN	1	0	Median	471360000	307470000	163880000	75409000	36972000	38436000	205430000	126350000	79087000	95043000	95043000	0	95471000	49112000	46360000	9641	773	9125	59488;59489;59490;59491	80239;80240;80241;80242	80241	381		4	
DVFNKGYGFGMVK	2	Acetyl (K);Oxidation (M)	1518.7177	0.71770049	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	0	1	1			By MS/MS		14.5	0.5							1	1				2		78.013	67.403	2	0.00044328	35807	160513_QHF_FH_JSI11Kac_5	83	72.476			0.90011	0.86787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90011	0.86787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6344300	2927700	3416600	0	0	0	0	0	0	6344300	2927700	3416600	0	0	0	9642	5499	9126	59492;59493	80243;80244	80244	3461	2682	2	
DVFNKGYGFGMVK	2	Acetyl (K)	1502.7228	0.72278587	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		83.793	73.267	2	4.1561E-05	38676	160513_QHF_FH_JSI11Kac_5	105.98	80.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2189600	2189600	0	0	0	0	0	0	0	2189600	2189600	0	0	0	0	9643	5499	9126	59494	80245	80245	3461		1	
DVFNQLLIHAALNCTSSVHK	1	Unmodified	2266.1528	0.15283561	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.418	89.33	4	0.018534	77576	160511_QHF_FH_JSI12i_3	31.917	18.045			0.42051	0.45183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42051	0.45183	NaN	1	1	Median	19640000	15493000	4147300	0	0	0	0	0	0	0	0	0	19640000	15493000	4147300	9644	2918	9127	59495	80246	80246			1	
DVFQELEK	1	Unmodified	1006.4971	0.49712625	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	2	1	3	65.953	61.248	2	1.6862E-06	55600	160511_QHF_FH_JSI11i_1	147.19	108.95			0.84014	0.89265	31.62	7	1	Median	1.2824	1.045	NaN	1	0	Median	0.84163	0.99707	25.477	2	0	Median	0.97341	0.9485	NaN	1	0	Median	0.84014	0.89265	33.101	3	1	Plateau	2666400000	1281300000	1385000000	674040000	302740000	371290000	587070000	282640000	304430000	748180000	373420000	374750000	657100000	322540000	334560000	9645	2757	9128	59496;59497;59498;59499;59500;59501;59502	80247;80248;80249;80250;80251;80252;80253;80254;80255;80256;80257	80248			11	
DVFQELEKR	1	Acetyl (K)	1204.6088	0.60880197	2757	Q16719	KYNU	Kynureninase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							3				2		1	76.646	66.082	2	0.0042726	35079	160513_QHF_FH_JSI10Kac_4	94.692	64.122			0.55215	0.62954	207.17	2	1	Median	NaN	NaN	NaN	0	0	Median	2.2609	2.7241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.13485	0.14549	NaN	1	1	Median	8026100	4553600	3472500	0	0	0	6224200	2914200	3310000	0	0	0	1801900	1639400	162510	9646	2757	9129	59503;59504;59505	80258;80259;80260	80258	2667		3	
DVFQHSQSR	0	Unmodified	1102.5156	0.51557028	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	11.312	10.96	2	0.00025167	8360	160511_QHF_FH_JSI12i_3	84.213	72.991			1.2451	1.3	49.568	7	4	Median	1.0263	0.90448	NaN	1	0	Median	0.84035	1.0254	55.469	2	2	Median	1.5662	1.534	23.411	2	1	Median	0.77934	0.83062	83.203	2	1	Median	267230000	130960000	136260000	32532000	15623000	16909000	73663000	38097000	35565000	92926000	41112000	51814000	68107000	36131000	31976000	9647	5147	9130	59506;59507;59508;59509;59510;59511;59512	80261;80262;80263;80264;80265;80266	80266			6	
DVFQKFYAK	2	Acetyl (K)	1186.6023	0.60226003	2453	Q13616	CUL1	Cullin-1	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		80.538	69.864	2	0.00018615	37071	160513_QHF_FH_JSI11Kac_4	96.253	84.206			0.18595	0.18679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18595	0.18679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2255700	2089000	166700	0	0	0	0	0	0	2255700	2089000	166700	0	0	0	9648	2453	9131	59513;59514	80267;80268	80267	2482		2	
DVFQKFYAR	1	Acetyl (K)	1214.6084	0.60840804	2454	Q13617	CUL2	Cullin-2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.546	69.978	2	8.8507E-05	37132	160513_QHF_FH_JSI11Kac_5	119.27	104.12			0.48332	0.46136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48332	0.46136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6560400	3430200	3130300	0	0	0	0	0	0	6560400	3430200	3130300	0	0	0	9649	2454	9132	59515	80269;80270	80269	2483		2	
DVFRDPALK	1	Unmodified	1059.5713	0.57129425	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	4.98	3	10	10				3	3		3	7	10	9	43.094	40.368	2;3	0.00014598	36611	160511_QHF_FH_JSI11i_1	81.972	62.877			0.90923	0.94905	56.14	29	14	Median	1.1726	0.9743	21.98	3	0	Median	0.78491	0.94313	39.589	7	3	Median	0.94415	0.93157	72.043	10	6	Median	0.87091	0.96739	61.349	9	5	Median	21208000000	10267000000	10941000000	3093500000	1477800000	1615700000	3735000000	1889700000	1845300000	8644700000	3997900000	4646700000	5735100000	2901600000	2833400000	9650	1953	9133	59516;59517;59518;59519;59520;59521;59522;59523;59524;59525;59526;59527;59528;59529;59530;59531;59532;59533;59534;59535;59536;59537;59538;59539;59540;59541;59542;59543;59544	80271;80272;80273;80274;80275;80276;80277;80278;80279;80280;80281;80282;80283;80284;80285;80286;80287;80288;80289;80290;80291;80292;80293;80294;80295;80296;80297;80298;80299;80300;80301;80302;80303;80304;80305;80306;80307	80276			37	
DVFSPIGER	0	Unmodified	1018.5084	0.50835964	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	2	3	2	54.363	51.129	2	3.1324E-11	46428	160511_QHF_FH_JSI10i_1	158.07	133.18			0.97542	0.97735	85.712	8	3	Median	0.91733	0.74588	NaN	1	0	Median	0.35078	0.41586	119.43	2	1	Median	1.0372	0.98718	103.27	3	1	Median	1.355	1.4377	4.2001	2	1	Median	1688500000	1058000000	630530000	293270000	158360000	134910000	580410000	412030000	168390000	573020000	384330000	188700000	241840000	103300000	138540000	9651	1862	9134	59545;59546;59547;59548;59549;59550;59551;59552	80308;80309;80310;80311;80312;80313;80314;80315;80316;80317;80318;80319;80320	80313			13	
DVFTKGYGFGLIK	2	Acetyl (K)	1485.7868	0.78676633	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4		1	3	1	89.862	81.118	2	7.3021E-21	45007	160513_QHF_FH_JSI11Kac_6	149.23	106.84			2.3619	2.3981	134.13	3	3	Median	NaN	NaN	NaN	0	0	Median	0.47126	0.56089	NaN	1	1	Median	8.1702	8.1766	NaN	1	1	Median	2.3619	2.3981	NaN	1	1	Median	90211000	30301000	59910000	0	0	0	33336000	23110000	10226000	37102000	3853500	33249000	19773000	3338200	16435000	9652	1195	9135	59553;59554;59555;59556;59557	80321;80322;80323;80324;80325	80322	1064		5	
DVGAQILLHSHK	1	Unmodified	1316.7201	0.72008375	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.17	6.26		1	3						2		2	1	3	44.477	40.72	2;3	7.7663E-06	34525	160511_QHF_FH_JSI12i_3	105.95	81.098			1.1265	0.86507	27.06	5	3	Linear	NaN	NaN	NaN	0	0	Median	0.74606	0.8939	NaN	1	1	Median	0.91025	0.86507	NaN	1	0	Median	1.2295	1.2122	37.881	3	2	Plateau	450590000	220270000	230320000	0	0	0	7041400	5630600	1410800	206740000	95176000	111560000	236810000	119460000	117350000	9653	4160	9136	59558;59559;59560;59561;59562;59563	80326;80327;80328;80329;80330;80331;80332;80333	80330			8	
DVGAQILLHSHKK	2	Unmodified	1444.815	0.81504677	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	34.307	33.32	3	4.4886E-05	27710	160511_QHF_FH_JSI9i_3	81.904	67.472			1.1193	1.0157	23.864	3	2	Median	1.1193	0.91162	NaN	1	0	Median	0.90035	1.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4087	1.4392	NaN	1	1	Median	152390000	67657000	84738000	60174000	30813000	29361000	23094000	10252000	12842000	0	0	0	69127000	26591000	42535000	9654	4160	9137	59564;59565;59566	80334;80335;80336;80337	80336			4	
DVGGEGVQQGLLK	1	Unmodified	1298.683	0.68302954	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	2	2	50.108	48.365	2	3.5357E-05	43640	160511_QHF_FH_JSI11i_1	117.52	97.216			1.1199	0.99018	47.165	8	8	Median	1.1199	0.92119	21.513	2	2	Median	1.0527	1.2356	42.613	2	2	Median	1.1046	1.0668	37.372	2	2	Median	0.81114	0.84645	101.15	2	2	Median	880710000	435850000	444870000	244160000	118100000	126060000	247800000	136460000	111340000	254210000	122620000	131590000	134530000	58660000	75872000	9655	598	9138	59567;59568;59569;59570;59571;59572;59573;59574	80338;80339;80340;80341;80342;80343;80344;80345	80338			8	
DVGNLLR	0	Unmodified	785.43955	0.43955179	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								3	2	2	2	45.957	45.158	2	0.0055543	40642	160511_QHF_FH_JSI10i_1	99.384	45.862			0.44773	0.47853	99.988	9	9	Median	0.6033	0.50216	92.962	3	3	Median	0.90219	1.0567	159.12	2	2	Median	1.1091	1.0378	164.84	2	2	Median	0.40149	0.44429	10.5	2	2	Median	474650000	262130000	212520000	100250000	54011000	46243000	144270000	77398000	66871000	133820000	65424000	68395000	96310000	65295000	31015000	9656	4989	9139	59575;59576;59577;59578;59579;59580;59581;59582;59583	80346;80347;80348;80349;80350;80351;80352;80353;80354	80351			9	
DVGPPPPVSK	1	Unmodified	991.53385	0.53384611	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.3	0.471				2	1							1	2	47.846	38.656	2	0.032576	16082	160513_QHF_FH_JSI12Kacf_1	51.854	35.652			0.96805	0.98015	3.77	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0256	1.0109	NaN	1	0	Median	0.94517	0.98339	4.8325	2	0	Median	144570000	75258000	69315000	0	0	0	0	0	0	48745000	25482000	23263000	95828000	49776000	46052000	9657	122	9140	59584;59585;59586	80355;80356	80355			2	
DVGRPNFEEGGPTSVGR	0	Unmodified	1772.8442	0.84417465	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	2	1		40.986	40.314	3	0.00013464	35118	160511_QHF_FH_JSI9i_2	68.088	60.308			0.84958	0.81202	2.9267	3	1	Median	0.92883	0.78024	NaN	1	0	Median	0.67035	0.82604	NaN	1	1	Median	0.84958	0.81202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182810000	93012000	89803000	49968000	19672000	30296000	71352000	45481000	25871000	61495000	27860000	33636000	0	0	0	9658	3172	9141	59587;59588;59589;59590	80357;80358;80359;80360	80358			4	
DVGRPQPGR	0	Unmodified	980.51518	0.51517635	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.67	4	8	5					3		6	6	4	4	8.4791	6.7166	2;3	0.00017194	5783	160511_QHF_FH_JSI10i_2	69.825	53.622			0.89635	0.9212	22.186	20	3	Median	1.2801	1.0481	25.635	6	2	Median	0.76393	0.9212	29.029	6	1	Median	0.9484	0.94552	5.086	4	0	Median	0.70282	0.77066	5.9725	4	0	Median	8034500000	3993700000	4040800000	3083300000	1362100000	1721300000	3158800000	1619700000	1539100000	1391300000	784270000	607020000	401060000	227670000	173390000	9659	1470	9142	59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606;59607;59608;59609;59610	80361;80362;80363;80364;80365;80366;80367;80368;80369;80370;80371;80372;80373;80374;80375;80376;80377;80378;80379;80380;80381;80382;80383;80384;80385;80386	80383			26	
DVGSLDEK	1	Unmodified	861.40798	0.40797689	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					2	2	2	2	21.381	19.976	2	0.0023473	16789	160511_QHF_FH_JSI9i_1	89.355	63.246			0.27235	0.2697	170.42	8	8	Median	1.6556	1.3523	267.91	2	2	Median	0.19685	0.22946	10.088	2	2	Median	1.2858	1.2632	205.6	2	2	Median	0.79098	0.84152	220.12	2	2	Median	2663400000	1478000000	1185400000	608450000	293480000	314980000	413540000	315270000	98268000	794380000	386080000	408300000	847050000	483220000	363830000	9660	4289	9143	59611;59612;59613;59614;59615;59616;59617;59618	80387;80388;80389;80390;80391;80392;80393;80394	80393			8	
DVGSLDEKMK	2	Acetyl (K);Oxidation (M)	1178.5489	0.54890383	4289	Q99584	S100A13	Protein S100-A13	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		39.942	30.868	2	0.0019399	17749	160513_QHF_FH_JSI11Kac_3	81.338	49.965			0.28191	0.26776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28191	0.26776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1961700	1168300	793410	0	0	0	0	0	0	1961700	1168300	793410	0	0	0	9661	4289	9144	59619	80395	80395	3105	2430	1	
DVHDALVQIISK	1	Unmodified	1336.7351	0.73506511	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	75.11	74.296	3	3.4639E-05	65956	160511_QHF_FH_JSI10i_2	67.519	53.84			1.2945	1.3037	64.762	5	4	Median	3.7052	3.2263	NaN	1	1	Median	0.83028	1.015	NaN	1	0	Median	0.83915	0.8408	62.027	2	2	Median	1.4098	1.5281	NaN	1	1	Median	119040000	55728000	63311000	13612000	2670800	10941000	32582000	16205000	16377000	55089000	28999000	26090000	17756000	7853000	9903100	9662	5239	9145	59620;59621;59622;59623;59624	80396;80397;80398;80399;80400	80400			5	
DVHMPKHPELADK	2	Acetyl (K)	1557.761	0.76096229	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.595							1	7	4		5	5	2	47.893	37.948	2;3;4	4.2158E-05	21421	160513_QHF_FH_JSI11Kac_5	88.507	83.228			0.44651	0.48902	106.77	11	0	Median	NaN	NaN	NaN	0	0	Median	1.4723	1.7626	33.796	5	0	Median	0.26292	0.25793	11.736	5	0	Median	0.44651	0.48902	NaN	1	0	Median	328430000	221080000	107360000	0	0	0	69862000	23648000	46214000	249810000	190260000	59548000	8760300	7165000	1595200	9663	1595	9146	59625;59626;59627;59628;59629;59630;59631;59632;59633;59634;59635;59636	80401;80402;80403;80404;80405;80406;80407;80408;80409;80410;80411;80412;80413;80414;80415;80416	80408	1622		16	
DVHMPKHPELADK	2	Acetyl (K);Oxidation (M)	1573.7559	0.75587691	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	1	0	1	1		By MS/MS	By MS/MS		15	0								5			2	3		32.565	23.028	3;4	0.00018525	13799	160513_QHF_FH_JSI11Kac_5	82.55	74.572			0.32094	0.31724	104.03	5	1	Median	NaN	NaN	NaN	0	0	Median	1.1725	1.384	16.885	2	0	Median	0.30342	0.30007	39.296	3	1	Plateau	NaN	NaN	NaN	0	0	Median	85883000	69374000	16509000	0	0	0	7400200	3453200	3947000	78483000	65921000	12562000	0	0	0	9664	1595	9146	59637;59638;59639;59640;59641	80417;80418;80419;80420;80421	80421	1622	1264	5	
DVHNIYGLYVHMATADGLR	0	Unmodified	2144.0473	0.047307904	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.55		2	6						11	3	4	8	4	84.889	79.845	2;3;4	7.1464E-57	41119	160513_QHF_FH_JSI11Kac_6	190.63	172.57			1.0974	0.99072	44.612	18	6	Median	0.99048	0.84109	18.523	3	1	Median	0.70932	0.8434	37.464	4	1	Linear	1.1433	1.0966	45.266	7	4	Median	1.2429	1.2841	13.205	4	0	Median	8665600000	4515700000	4149900000	2038300000	1007300000	1031000000	2736500000	1733000000	1003500000	2424000000	1314500000	1109600000	1466800000	460900000	1005900000	9665	2569	9147	59642;59643;59644;59645;59646;59647;59648;59649;59650;59651;59652;59653;59654;59655;59656;59657;59658;59659;59660	80422;80423;80424;80425;80426;80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447;80448;80449;80450;80451;80452;80453;80454;80455;80456;80457	80430			36	
DVHNIYGLYVHMATADGLR	0	Oxidation (M)	2160.0422	0.042222526	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	3	3	4	3	75.095	66.559	3;4	1.0404E-25	35292	160513_QHF_FH_JSI9Kac_6	155.87	135.78			0.92237	0.88713	14.222	13	2	Median	1.0617	0.88713	9.6293	3	0	Median	0.7339	0.86193	16.55	3	0	Median	0.96986	0.92447	17.614	4	2	Median	0.89284	0.935	6.2956	3	0	Median	1865200000	970420000	894780000	524260000	249700000	274570000	475010000	291670000	183340000	525580000	270530000	255040000	340350000	158520000	181830000	9666	2569	9147	59661;59662;59663;59664;59665;59666;59667;59668;59669;59670;59671;59672;59673	80458;80459;80460;80461;80462;80463;80464;80465;80466;80467;80468;80469;80470;80471;80472;80473;80474;80475;80476	80462		2012	19	
DVHTLLDR	0	Unmodified	967.50869	0.50869399	4895	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	38.254	37.092	3	0.0037442	31614	160511_QHF_FH_JSI12i_2	47.198	21.461			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9667	4895	9148	59674;59675	80477;80478	80477			2	
DVIAFPK	1	Unmodified	788.44324	0.44324019	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	53.512	52.847	2	0.012077	47484	160511_QHF_FH_JSI10i_1	75.311	58.384			0.76596	0.7486	55.825	8	8	Median	0.93951	0.77053	80.733	2	2	Median	0.68015	0.79958	69.465	2	2	Median	0.76833	0.7365	69.449	2	2	Median	0.66173	0.68226	73.271	2	2	Median	476510000	267350000	209160000	107520000	48040000	59476000	114960000	71795000	43162000	146370000	80412000	65957000	107660000	67102000	40562000	9668	3119	9149	59676;59677;59678;59679;59680;59681;59682;59683	80479;80480;80481;80482;80483;80484;80485;80486	80483			8	
DVIAINQDPLGK	1	Unmodified	1281.6929	0.69286595	847	P06280	GLA	Alpha-galactosidase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.41	64.796	2	0.00037535	57542	160511_QHF_FH_JSI9i_1	88.948	70.637			0.64703	0.22206	114.31	4	2	Linear	1.9373	1.5998	NaN	1	1	Median	0.22476	0.26374	NaN	1	0	Median	0.22928	0.22215	NaN	1	0	Median	1.8259	1.8929	NaN	1	1	Median	408250000	281610000	126640000	56677000	21631000	35046000	141290000	110960000	30325000	162120000	130400000	31718000	48166000	18617000	29550000	9669	847	9150	59684;59685;59686;59687	80487;80488;80489	80489			2	
DVIAQSQSGTGK	1	Unmodified	1189.5939	0.59388018	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.636	15.574	2	0.00014193	12846	160511_QHF_FH_JSI9i_1	100.69	74.582			3.4117	2.7693	NaN	1	1	Median	3.4117	2.7693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61137000	10797000	50340000	61137000	10797000	50340000	0	0	0	0	0	0	0	0	0	9670	1481	9151	59688	80490	80490			1	
DVIATDK	1	Unmodified	760.39668	0.39668393	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.4	5.39	3				2					1	2		2	16.533	13.345	2	0.0041268	6779	160513_QHF_FH_JSI12Kac_2	102.71	48.188			3.3094	2.8702	23.906	5	5	Median	3.6434	2.8702	NaN	1	1	Median	2.4358	2.8988	44.269	2	2	Median	NaN	NaN	NaN	0	0	Median	2.9904	3.1777	14.726	2	2	Median	3894900000	1791000000	2103900000	1102300000	390700000	711570000	1680400000	901490000	778870000	0	0	0	1112200000	498800000	613430000	9671	1503	9152	59689;59690;59691;59692;59693	80491;80492;80493;80494;80495	80495			5	
DVIATDKEDVAFK	2	Unmodified	1449.7351	0.73512469	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								4	4	2	3	47.41	46.678	2;3	8.3755E-06	42398	160511_QHF_FH_JSI12i_1	118.37	90.685			1.1394	1.2118	52.106	10	8	Median	0.99902	0.82255	61.248	3	2	Median	0.83829	0.98913	21.64	2	1	Median	1.3038	1.2767	0.30395	2	2	Median	1.8986	1.9909	74.045	3	3	Median	1811500000	959210000	852290000	395000000	204950000	190050000	400740000	263000000	137740000	374630000	163870000	210760000	641130000	327390000	313740000	9672	1503	9153	59694;59695;59696;59697;59698;59699;59700;59701;59702;59703;59704;59705;59706	80496;80497;80498;80499;80500;80501;80502;80503;80504;80505;80506;80507;80508;80509	80499			13	
DVIDEPIIEEPSR	0	Unmodified	1510.7515	0.75150304	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	63.978	63.134	2	4.8858E-06	57397	160511_QHF_FH_JSI12i_1	125.23	116.01			1.3756	1.2702	31.668	2	2	Median	1.244	1.0153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5211	1.589	NaN	1	1	Median	261540000	114490000	147050000	136660000	63888000	72776000	0	0	0	0	0	0	124880000	50601000	74275000	9673	396	9154	59707;59708	80510;80511	80510			2	
DVIDEPIIEEPSRLQESVMEASR	0	Unmodified	2641.2905	0.29051088	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		92.741	92.293	3	2.6368E-05	81037	160511_QHF_FH_JSI11i_2	59.469	55.398			1.2111	1.2315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2111	1.2315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20229000	11623000	8605700	0	0	0	0	0	0	20229000	11623000	8605700	0	0	0	9674	396	9155	59709	80512	80512			1	
DVIEEHGPSEK	1	Unmodified	1238.5779	0.57789577	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.569	17.208	2	0.0008815	14761	160511_QHF_FH_JSI12i_1	78.655	66.429			0.69047	0.76372	89.695	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2362	1.4401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38568	0.40503	NaN	1	1	Median	70874000	44260000	26614000	0	0	0	41175000	22657000	18518000	0	0	0	29699000	21604000	8095500	9675	1725	9156	59710;59711	80513;80514	80513			2	
DVIEEYFK	1	Unmodified	1041.5019	0.50187728	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.3	4	4	1			2	4	4		4	5	5	5	73.49	67.525	2	2.7946E-06	62690	160511_QHF_FH_JSI12i_1	141.78	114.26			1.0127	1.1035	37.921	18	5	Median	1.0488	0.87685	75.437	3	1	Median	0.98879	1.1865	13.593	5	1	Median	0.98899	0.96973	22.638	5	3	Median	1.0351	1.1048	19.234	5	0	Median	7791200000	4011600000	3779600000	1862700000	1007500000	855210000	1925100000	1057200000	867890000	1893700000	894040000	999650000	2109700000	1052800000	1056900000	9676	1258	9157	59712;59713;59714;59715;59716;59717;59718;59719;59720;59721;59722;59723;59724;59725;59726;59727;59728;59729;59730	80515;80516;80517;80518;80519;80520;80521;80522;80523;80524;80525;80526;80527;80528;80529;80530;80531;80532;80533;80534;80535;80536;80537;80538;80539;80540;80541;80542;80543;80544;80545;80546;80547;80548;80549;80550;80551	80523			37	
DVIELTDDSFDK	1	Unmodified	1395.6406	0.64055561	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	5.64	8		3		3	8				4	8	4	6	71	65.947	2	2.9595E-31	7857	160513_QHF_FH_JSI9Kac_3	185.71	145.71			1.1213	1.0269	76.713	18	17	Median	1.2694	1.0175	74.048	3	2	Median	0.73077	0.86044	80.746	6	6	Median	1.1568	1.1147	85.025	4	4	Median	0.99047	1.0364	92.443	5	5	Median	8413000000	4198000000	4215000000	1771200000	754730000	1016500000	2199400000	1140200000	1059300000	2326700000	1258900000	1067800000	2115600000	1044200000	1071400000	9677	2628	9158	59731;59732;59733;59734;59735;59736;59737;59738;59739;59740;59741;59742;59743;59744;59745;59746;59747;59748;59749;59750;59751;59752	80552;80553;80554;80555;80556;80557;80558;80559;80560;80561;80562;80563;80564;80565;80566;80567;80568;80569;80570;80571;80572;80573;80574;80575;80576;80577;80578;80579;80580;80581;80582;80583	80569			32	
DVIEQLNLVTTWLQLQIPR	0	Unmodified	2278.2685	0.26851729	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.12		2	1	1					6	3	2	4	1	103.08	97.657	2;3	1.4411E-222	54008	160513_QHF_FH_JSI9Kac_6	319.58	298.28			0.99402	0.89626	47.995	9	5	Median	1.0542	0.89626	3.6996	3	0	Plateau	0.88261	1.0444	12.635	2	1	Median	1.4941	1.3851	59.815	3	3	Median	0.31759	0.33489	NaN	1	1	Median	3534800000	2056000000	1478900000	507520000	222470000	285060000	2023800000	1151100000	872670000	750000000	474410000	275590000	253540000	208000000	45544000	9678	2244	9159	59753;59754;59755;59756;59757;59758;59759;59760;59761;59762	80584;80585;80586;80587;80588;80589;80590;80591;80592;80593;80594;80595	80591			12	
DVIGIAHHPHQNLIATYSEDGLLK	1	Unmodified	2640.366	0.36599951	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.62	4.3			7						1	1		2	5	77.381	75.997	3;4	3.5695E-13	66387	160511_QHF_FH_JSI12i_3	107.08	107.08			1.11	1.052	58.007	7	3	Median	1.2185	1.052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9206	0.84969	28.328	2	1	Median	1.1486	1.1613	75.82	4	2	Median	445570000	212990000	232580000	38278000	19966000	18312000	0	0	0	109890000	54272000	55621000	297400000	138750000	158650000	9679	2801	9160	59763;59764;59765;59766;59767;59768;59769;59770	80596;80597;80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608	80602			12	
DVIIADCGK	1	Unmodified	989.48518	0.48518136	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	5.83	8				3	6				2	6	4	5	38.276	33.274	2	0.0012377	30398	160511_QHF_FH_JSI12i_1	78.516	60.53			0.59058	0.6621	136.39	16	14	Median	1.0261	0.83399	190.23	2	2	Median	0.4929	0.55821	189.5	5	4	Median	0.96194	0.93802	112.67	4	4	Median	0.70761	0.78533	117.98	5	4	Median	5216100000	2537800000	2678200000	813620000	448300000	365320000	1183200000	531340000	651880000	1862500000	959380000	903130000	1356700000	598820000	757910000	9680	1224	9161	59771;59772;59773;59774;59775;59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787	80609;80610;80611;80612;80613;80614;80615;80616;80617;80618;80619;80620;80621;80622;80623;80624;80625;80626;80627	80612			18	
DVIINQEGEYIK	1	Unmodified	1419.7246	0.72456001	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	66.835	57.611	2	0.027309	29693	160513_QHF_FH_JSI12Kac_3	45.161	17.419			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9681	4848	9162	59788	80628	80628			1	
DVILDEK	1	Unmodified	830.43855	0.43854874	5161	Q9NZM1	MYOF	Myoferlin	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	32.091	31.173	2	0.012132	28019	160511_QHF_FH_JSI12i_1	75.109	36.318			5.3864	5.0485	31.352	2	2	Median	7.6782	6.3015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7787	4.0447	NaN	1	1	Median	179660000	53973000	125680000	72030000	15711000	56319000	0	0	0	0	0	0	107630000	38262000	69365000	9682	5161	9163	59789;59790	80629;80630	80629			2	
DVINEAWFPEDQR	0	Unmodified	1617.7423	0.74233534	3601	Q8NBP7	PCSK9	Proprotein convertase subtilisin/kexin type 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	76.231	75.685	2	8.3089E-07	67440	160511_QHF_FH_JSI9i_1	89.403	79.748			1.624	1.6022	5.9523	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.624	1.6022	5.9523	2	2	Median	22035000	9998600	12037000	0	0	0	0	0	0	0	0	0	22035000	9998600	12037000	9683	3601	9164	59791;59792;59793;59794	80631;80632;80633;80634	80634			4	
DVINFTAEK	1	Unmodified	1035.5237	0.52367535	753	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				50.437	49.227	2	0.00874	43764	160511_QHF_FH_JSI9i_1	60.91	42.925			5.6537	4.6785	NaN	1	1	Median	5.6537	4.6785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27215000	9706200	17509000	27215000	9706200	17509000	0	0	0	0	0	0	0	0	0	9684	753	9165	59795	80635	80635			1	
DVIPFPR	0	Unmodified	842.46504	0.46503826	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	2	1	60.385	59.72	2	0.0062019	54204	160511_QHF_FH_JSI11i_1	92.692	60.222			1.2235	1.1957	27.602	6	3	Median	1.1866	0.98291	28.253	2	1	Median	1.014	1.1912	NaN	1	0	Median	1.1883	1.1331	42.391	2	2	Median	1.4762	1.5004	NaN	1	0	Median	154140000	69807000	84333000	64949000	30261000	34688000	28135000	12346000	15790000	42696000	18732000	23965000	18360000	8468900	9890800	9685	4121	9166	59796;59797;59798;59799;59800;59801	80636;80637;80638;80639;80640;80641;80642;80643;80644	80637			9	
DVIQKNK	2	Acetyl (K)	885.49198	0.4919813	1760	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		24.082	16.519	2	0.03575	10488	160513_QHF_FH_JSI11Kac_3	73.039	44.821			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	749830	749830	0	0	0	0	0	0	0	749830	749830	0	0	0	0	9686	1760	9167	59802	80645	80645			1	
DVIRPGMR	0	Unmodified	942.50692	0.50691985	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.932	19.694	3	0.0071742	15813	160511_QHF_FH_JSI9i_3	48.561	36.848			0.5223	0.41731	NaN	1	1	Median	0.5223	0.41731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53839000	29934000	23905000	53839000	29934000	23905000	0	0	0	0	0	0	0	0	0	9687	1262	9168	59803	80646	80646			1	
DVISAQFENTTTSK	1	Unmodified	1539.7417	0.74166663	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.051	50.636	2	0.00031919	45633	160511_QHF_FH_JSI10i_1	101.89	84.946			0.71322	0.82588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71322	0.82588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27459000	12459000	14999000	0	0	0	27459000	12459000	14999000	0	0	0	0	0	0	9688	3004	9169	59804	80647	80647			1	
DVIYAVR	0	Unmodified	834.45995	0.45995289	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		46.483	36.117	2	0.043561	21483	160513_QHF_FH_JSI11Kac_4	51.572	16.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9689	2241	9170	59805	80648	80648			1	
DVKFGADAR	1	Acetyl (K)	1019.5036	0.50360861	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.7					1	3	3				2	3	2	41.227	31.87	2	7.3755E-07	18381	160513_QHF_FH_JSI11Kac_3	134.25	96.688			0.65577	0.71079	55.225	6	0	Median	NaN	NaN	NaN	0	0	Median	0.91918	1.1057	16.157	2	0	Median	0.34093	0.33713	16.885	2	0	Median	0.65577	0.71079	16.961	2	0	Median	270230000	177130000	93105000	0	0	0	74758000	43094000	31664000	122700000	86011000	36688000	72776000	48023000	24753000	9690	980	9171	59806;59807;59808;59809;59810;59811;59812	80649;80650;80651;80652;80653;80654;80655;80656;80657;80658;80659;80660;80661	80652	753		13	
DVKGTYEPGK	2	Acetyl (K)	1134.5557	0.55570376	1694	P49916	LIG3	DNA ligase 3	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	34.801	26.336	2	0.019385	15269	160513_QHF_FH_JSI12Kac_3	61.65	40.186			2.7504	2.8592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7504	2.8592	NaN	1	1	Median	1355900	354670	1001200	0	0	0	0	0	0	0	0	0	1355900	354670	1001200	9691	1694	9172	59813	80662	80662	1711		1	
DVKPDNFLMGLGK	2	Unmodified	1432.7384	0.73843593	1634	P48730	CSNK1D	Casein kinase I isoform delta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	76.512	75.646	3	0.0082596	66195	160511_QHF_FH_JSI11i_2	43.382	35.131			0.82705	0.82301	63.766	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.85837	1.0888	NaN	1	1	Median	0.82705	0.82301	NaN	1	1	Median	2.5392	2.7807	NaN	1	1	Median	66186000	29861000	36326000	0	0	0	11887000	7254000	4632800	31953000	16590000	15364000	22346000	6017100	16329000	9692	1634	9173	59814;59815;59816;59817;59818	80663;80664;80665;80666;80667;80668	80666			6	
DVKPENLLYTSK	2	Unmodified	1405.7453	0.74529545	1643;2750	P49137;Q16644	MAPKAPK2;MAPKAPK3	MAP kinase-activated protein kinase 2;MAP kinase-activated protein kinase 3	no	no	0	0	0	1				By MS/MS	2	0		1											1	51.373	49.977	3	0.053551	42740	160511_QHF_FH_JSI12i_2	30.961	24.799			0.62019	0.66368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62019	0.66368	NaN	1	1	Median	41652000	15650000	26001000	0	0	0	0	0	0	0	0	0	41652000	15650000	26001000	9693	1643;2750	9174	59819	80669	80669			1	
DVKPSNVLINALGQVK	2	Unmodified	1693.9727	0.97266962	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	82.68	82.471	3	2.5225E-05	71642	160511_QHF_FH_JSI12i_3	79.022	72.724			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9694	1772	9175	59820	80670	80670			1	
DVKVFNVTK	2	Acetyl (K)	1090.6023	0.60226003	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	66.3	56.867	2	0.00069912	28756	160513_QHF_FH_JSI10Kac_3	91.584	62.111			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14067000	14067000	0	0	0	0	4521700	4521700	0	2868900	2868900	0	6676100	6676100	0	9695	4394	9176	59821;59822;59823	80671;80672;80673	80673	3148		3	
DVLAHQVPNAK	1	Unmodified	1190.6408	0.6407708	5162	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	27.566	26.277	2	0.00013733	22085	160511_QHF_FH_JSI11i_2	89.698	75.024			1.7521	1.8474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7521	1.8474	NaN	1	1	Median	23727000	9519600	14208000	0	0	0	0	0	0	0	0	0	23727000	9519600	14208000	9696	5162	9177	59824;59825	80674;80675	80675			2	
DVLDGHLR	0	Unmodified	923.48248	0.48247924	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.136	28.227	3	0.0066549	23738	160511_QHF_FH_JSI12i_2	42.075	25.299			0.76907	0.71326	35.42	4	2	Median	0.88622	0.74865	NaN	1	1	Median	0.39675	0.49189	NaN	1	1	Median	0.6674	0.67955	NaN	1	0	Median	1.0508	1.1605	NaN	1	0	Median	398910000	223040000	175860000	70379000	36999000	33380000	87364000	56319000	31046000	164210000	85765000	78449000	76950000	43961000	32989000	9697	1085	9178	59826;59827;59828;59829	80676;80677;80678;80679;80680;80681	80677			6	
DVLDVYIEHR	0	Unmodified	1257.6354	0.63535107	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.88		4						1	3	2	2	1	3	45.555	41.085	2;3	5.1109E-08	50373	160511_QHF_FH_JSI11i_2	103.34	78.487			0.9767	0.9567	21.593	8	0	Median	1.2086	1.0275	14.961	2	0	Median	0.79469	0.95066	34.041	2	0	Median	0.9942	0.99018	NaN	1	0	Median	0.75685	0.82341	25.059	3	0	Median	373450000	188710000	184740000	63808000	27215000	36593000	78538000	47305000	31233000	87033000	45370000	41664000	144070000	68819000	75251000	9698	1411	9179	59830;59831;59832;59833;59834;59835;59836;59837	80682;80683;80684;80685;80686;80687	80684			6	
DVLEGYNGTIFAYGQTSSGK	1	Unmodified	2105.9906	0.99056411	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								4	3	3	2	84.028	83.578	2;3	7.3623E-42	74243	160511_QHF_FH_JSI11i_1	235.22	222.09			0.72985	0.75373	35.489	12	9	Median	0.83271	0.71014	50.467	4	3	Median	0.49342	0.55856	32.581	3	3	Median	0.77611	0.80694	32.232	3	2	Median	0.73645	0.76472	11.693	2	1	Median	368930000	203450000	165480000	119620000	63427000	56196000	89411000	55259000	34152000	95782000	47378000	48404000	64109000	37385000	26724000	9699	1400	9180	59838;59839;59840;59841;59842;59843;59844;59845;59846;59847;59848;59849	80688;80689;80690;80691;80692;80693;80694;80695;80696;80697;80698;80699;80700;80701;80702;80703	80688			16	
DVLETFTVK	1	Unmodified	1050.5597	0.55972651	1197	P21926	CD9	CD9 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.66	4	5	3			3	4			5	5	4	5	64.496	59.228	2	9.0679E-07	60482	160511_QHF_FH_JSI11i_1	135.83	110.94			1.1013	1.1073	41.145	18	10	Median	1.1587	0.88774	25.907	5	3	Median	0.95555	1.1051	60.842	5	4	Median	1.368	1.3148	38.649	4	3	Median	1.0449	1.1278	16.383	4	0	Median	4855900000	2330700000	2525200000	1028100000	418560000	609540000	1430100000	681080000	749000000	1393100000	736140000	656930000	1004700000	494900000	509760000	9700	1197	9181	59850;59851;59852;59853;59854;59855;59856;59857;59858;59859;59860;59861;59862;59863;59864;59865;59866;59867;59868	80704;80705;80706;80707;80708;80709;80710;80711;80712;80713;80714;80715;80716;80717;80718;80719;80720;80721;80722;80723;80724;80725;80726;80727;80728;80729;80730;80731;80732	80706			29	
DVLEVGELAK	1	Unmodified	1071.5812	0.58119023	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	8					6				3	4	3	4	67.788	64.531	2	9.8498E-07	58296	160511_QHF_FH_JSI11i_1	120.12	80.118			1.6705	1.7045	106.09	12	11	Median	0.88611	0.72671	121.43	2	2	Median	1.444	1.694	106.88	3	3	Median	2.0544	1.9855	95.728	3	3	Median	1.312	1.3973	142.89	4	3	Median	1917100000	958110000	958950000	446390000	221270000	225120000	453430000	258610000	194820000	550360000	287600000	262760000	466880000	190620000	276250000	9701	4614	9182	59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879;59880;59881;59882	80733;80734;80735;80736;80737;80738;80739;80740;80741;80742;80743;80744;80745;80746;80747;80748;80749;80750	80734			18	
DVLEYVVFEK	1	Unmodified	1239.6387	0.63870511	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	92.004	91.183	2	1.1861E-06	78675	160511_QHF_FH_JSI12i_2	127.4	118.53			0.50048	0.54474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50048	0.54474	NaN	1	1	Median	25116000	13948000	11167000	0	0	0	0	0	0	0	0	0	25116000	13948000	11167000	9702	4371	9183	59883	80751	80751			1	
DVLGMAQDEMAQAFEDWNK	1	Unmodified	2196.9456	0.94560453	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								1	3	4	4	102.45	102.36	2;3	1.7466E-82	88262	160511_QHF_FH_JSI12i_2	248.68	228.94			0.79193	0.8783	36.977	12	1	Median	0.73375	0.63452	NaN	1	0	Median	0.79512	0.92589	13.452	3	0	Plateau	0.63816	0.62538	31.325	4	0	Median	1.118	1.2164	14.1	4	1	Median	1694100000	953910000	740180000	187630000	108720000	78910000	597670000	345470000	252200000	477870000	269170000	208700000	430920000	230550000	200370000	9703	1764	9184	59884;59885;59886;59887;59888;59889;59890;59891;59892;59893;59894;59895	80752;80753;80754;80755;80756;80757;80758;80759;80760;80761	80754			9	
DVLGWGENDR	0	Unmodified	1159.5258	0.52580062	1461	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	53.357	52.776	2	0.0079407	47808	160511_QHF_FH_JSI12i_1	60.518	50.368			0.85561	0.8283	57.098	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85561	0.8283	NaN	1	0	Median	0.87594	0.91132	80.372	2	2	Median	186580000	91536000	95041000	0	0	0	0	0	0	73886000	37006000	36880000	112690000	54530000	58161000	9704	1461	9185	59896;59897;59898	80762;80763;80764	80763			2	
DVLIEFYAPWCGHCK	1	Unmodified	1893.8542	0.85421075	1034;1344	P13667;P30101	PDIA4;PDIA3	Protein disulfide-isomerase A4;Protein disulfide-isomerase A3	no	no	0	0	0	0				By MS/MS	2	0		2											2	94.724	94.054	3	0.023345	81128	160511_QHF_FH_JSI12i_2	35.657	25.999			1.2553	1.3065	50.111	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2553	1.3065	50.111	2	2	Median	8915500	3855000	5060500	0	0	0	0	0	0	0	0	0	8915500	3855000	5060500	9705	1034;1344	9186	59899;59900	80765;80766	80766			2	
DVLIPGK	1	Unmodified	740.44324	0.44324019	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	3.9	9						1			3	2	3	2	40.137	38.475	2	0.014342	34556	160511_QHF_FH_JSI12i_1	67.035	9.5713			0.49735	0.49638	81.056	10	10	Median	0.50962	0.42193	105.52	3	3	Median	0.86707	1.039	102.51	2	2	Median	0.48538	0.48956	85.879	3	3	Median	0.64445	0.68169	92.967	2	2	Median	2317400000	1285800000	1031600000	471220000	242570000	228660000	631600000	388880000	242730000	701910000	374190000	327710000	512690000	280210000	232480000	9706	4390	9187	59901;59902;59903;59904;59905;59906;59907;59908;59909;59910	80767;80768;80769;80770;80771;80772;80773;80774;80775;80776;80777	80770			11	
DVLIQGLIDENPGLQLIIR	0	Unmodified	2118.2049	0.2048544	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		102.73	102.62	2;3	2.435E-21	90416	160511_QHF_FH_JSI11i_2	257.02	230.4			0.98357	0.98811	61.68	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98357	0.98811	61.68	2	1	Median	NaN	NaN	NaN	0	0	Median	296200000	124340000	171860000	0	0	0	0	0	0	296200000	124340000	171860000	0	0	0	9707	2094	9188	59911;59912	80778;80779	80779			2	
DVLISEFQR	0	Unmodified	1105.5768	0.57677356	4746	Q9H6K1	C6orf106	Uncharacterized protein C6orf106	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			71.359	60.736	2	0.037464	32502	160513_QHF_FH_JSI10Kac_4	59.245	32.643			2.8114	2.9442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8114	2.9442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	985360	295320	690040	0	0	0	985360	295320	690040	0	0	0	0	0	0	9708	4746	9189	59913	80780	80780			1	
DVLKLVEAR	1	Acetyl (K)	1083.6288	0.62880913	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.1	0.35							6	1			2	3	2	80.255	69.718	2	0.0023523	37014	160513_QHF_FH_JSI11Kac_5	85.731	53.796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8869700	5633400	3236300	0	0	0	4397000	2289000	2107900	1909000	1909000	0	2563800	1435400	1128400	9709	2585	9190	59914;59915;59916;59917;59918;59919;59920	80781;80782;80783;80784;80785;80786;80787	80787	2560		7	
DVLLARPELK	1	Unmodified	1152.6867	0.68665836	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	52.176	50.784	3	0.023659	43477	160511_QHF_FH_JSI12i_2	31.843	21.319			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9710	3236	9191	59921	80788	80788			1	
DVLLPLK	1	Unmodified	796.50584	0.50584045	5563	Q9Y385	UBE2J1	Ubiquitin-conjugating enzyme E2 J1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	65.605	65.113	2	0.014877	57835	160511_QHF_FH_JSI9i_1	57.463	34.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9430100	0	9430100	0	0	0	3117800	0	3117800	0	0	0	6312300	0	6312300	9711	5563	9192	59922;59923;59924	80789;80790;80791	80791			3	
DVLLPWYNAYR	0	Unmodified	1408.7139	0.71393574	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		4	1						2	3	1	1	2	91.845	88.849	2	1.8069E-10	81617	160511_QHF_FH_JSI11i_2	140.5	132.28			0.8408	0.87952	21.811	7	2	Median	1.0222	0.87952	32.795	3	1	Median	0.78592	0.94218	NaN	1	0	Median	0.94164	0.93367	NaN	1	0	Median	0.71699	0.78943	14.871	2	1	Median	725030000	382380000	342650000	174430000	86061000	88371000	152290000	76205000	76089000	207220000	96707000	110510000	191080000	123400000	67681000	9712	1520	9193	59925;59926;59927;59928;59929;59930;59931	80792;80793;80794;80795;80796;80797;80798;80799;80800;80801;80802;80803;80804	80798			13	
DVLLQVDDER	0	Unmodified	1200.5986	0.59863121	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		52.278	51.866	2	0.00012586	46947	160511_QHF_FH_JSI11i_1	98.249	77.347			1.2744	1.2228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2744	1.2228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31793000	16715000	15078000	0	0	0	0	0	0	31793000	16715000	15078000	0	0	0	9713	1436	9194	59932;59933	80805;80806	80805			2	
DVLLQVDDERR	0	Unmodified	1356.6997	0.69974224	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.831	3	3	4							2	2	2	4	42.788	42.105	2;3	2.6716E-24	35929	160511_QHF_FH_JSI12i_2	221.52	156.68			0.86233	0.91607	26.794	10	4	Median	0.92545	0.77671	41.671	2	1	Median	0.93637	1.1433	19.329	2	0	Median	1.0192	0.9716	20.326	2	1	Median	0.75983	0.78462	26.86	4	2	Median	1232400000	636080000	596330000	235910000	102710000	133210000	478480000	248730000	229750000	177620000	89498000	88123000	340400000	195150000	145260000	9714	1436	9195	59934;59935;59936;59937;59938;59939;59940;59941;59942;59943	80807;80808;80809;80810;80811;80812;80813;80814	80809			5	
DVLLRPK	1	Unmodified	839.52289	0.52288749	5224	Q9P2T1;P36959	GMPR2;GMPR	GMP reductase 2;GMP reductase 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	25.127	24.667	3	0.0107	20881	160511_QHF_FH_JSI11i_3	52.683	28.711			2.5009	2.4128	61.002	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6844	1.5674	NaN	1	1	Median	3.7131	3.7141	NaN	1	1	Median	276420000	8091100	268330000	14682000	0	14682000	15739000	0	15739000	86948000	1844500	85103000	159060000	6246600	152810000	9715	5224	9196	59944;59945;59946;59947;59948	80815;80816;80817;80818;80819	80815			5	
DVLLVAQGEMALEEFLK	1	Unmodified	1903.9965	0.99650111	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		103.71	103.66	2	2.078E-10	91395	160511_QHF_FH_JSI11i_2	141.38	118.46			1.4347	1.4632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4347	1.4632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33044000	20373000	12671000	0	0	0	0	0	0	33044000	20373000	12671000	0	0	0	9716	2517	9197	59949;59950	80820;80821	80821			2	
DVLNDSENK	1	Unmodified	1032.4724	0.47236807	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.285	15.266	2	0.0040113	12517	160511_QHF_FH_JSI9i_1	58.981	29.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9717	1599	9198	59951	80822	80822			1	
DVLNDTAPR	0	Unmodified	999.49852	0.49852324	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	28.735	24.958	2	0.00017953	14616	160513_QHF_FH_JSI11Kac_3	104.2	78.464			0.71083	0.69737	102.26	5	4	Median	6.8987	5.6914	NaN	1	1	Median	0.56385	0.67189	NaN	1	1	Median	0.53681	0.52418	40.372	2	1	Median	0.86485	0.94617	NaN	1	1	Median	481390000	208240000	273150000	112540000	16131000	96406000	188760000	99990000	88769000	175180000	89920000	85263000	4911900	2198200	2713700	9718	1609	9199	59952;59953;59954;59955;59956;59957	80823;80824;80825;80826;80827;80828;80829	80826			7	
DVLNEDVR	0	Unmodified	958.47197	0.47197413	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		29.11	28.364	2	0.0056357	24686	160511_QHF_FH_JSI9i_1	73.248	58.473			0.80456	0.71362	2.6489	2	2	Median	0.867	0.70037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74661	0.72711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102150000	52539000	49613000	49455000	20482000	28973000	0	0	0	52697000	32056000	20640000	0	0	0	9719	475	9200	59958;59959	80830;80831	80831			2	
DVLPLGK	1	Unmodified	740.44324	0.44324019	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	44.854	44.271	2	0.014342	40311	160511_QHF_FH_JSI12i_1	67.035	9.5713			1.9326	2.136	84.492	6	6	Median	3.7261	3.0465	NaN	1	1	Median	0.87141	1.0249	112.6	2	2	Median	1.3005	1.2694	117.05	2	2	Median	1.9351	2.0079	NaN	1	1	Median	487580000	227190000	260390000	74098000	24364000	49734000	171640000	92183000	79462000	167180000	81591000	85588000	74657000	29053000	45604000	9720	4416	9201	59960;59961;59962;59963;59964;59965	80832;80833;80834;80835;80836;80837	80834			6	
DVLQAAAAEHQDQGQEVNGEVR	0	Unmodified	2363.1102	0.11017875	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.71	44.065	3	1.8057E-18	40057	160511_QHF_FH_JSI12i_1	140.17	120.92			1.0064	1.0255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0064	1.0255	NaN	1	1	Median	32536000	17422000	15114000	0	0	0	0	0	0	0	0	0	32536000	17422000	15114000	9721	2269	9202	59966	80838	80838			1	
DVLQGELEAVK	1	Unmodified	1199.6398	0.63976774	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	61.628	61.038	2	1.2345E-06	54214	160511_QHF_FH_JSI9i_1	119.22	101.99			1.2382	1.0334	48.576	5	5	Median	1.2382	1.0292	NaN	1	1	Median	0.80555	0.95046	93.577	2	2	Median	1.3229	1.3065	NaN	1	1	Median	1.0113	1.0334	NaN	1	1	Median	442890000	239720000	203170000	98203000	43522000	54681000	166120000	88320000	77804000	92731000	53204000	39527000	85830000	54669000	31161000	9722	404	9203	59967;59968;59969;59970;59971	80839;80840;80841;80842;80843	80843			5	
DVLQHVDSMQK	1	Unmodified	1298.6289	0.62888548	4301	Q99685	MGLL	Monoglyceride lipase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.157	35.805	2	0.00035935	30477	160511_QHF_FH_JSI12i_2	88.681	83.897			0.25857	0.28968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25857	0.28968	NaN	1	1	Median	15240000	11954000	3286300	0	0	0	0	0	0	0	0	0	15240000	11954000	3286300	9723	4301	9204	59972	80844	80844			1	
DVLSGGEK	1	Unmodified	803.4025	0.40249759	1406	P33897;Q9UBJ2	ABCD1;ABCD2	ATP-binding cassette sub-family D member 1;ATP-binding cassette sub-family D member 2	yes	no	0	0	0	0				By MS/MS	1	0	1												1	14.681	14.252	2	0.049485	11967	160511_QHF_FH_JSI12i_1	46.129	23.637			1.044	1.0889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.044	1.0889	NaN	1	1	Median	79167000	31041000	48126000	0	0	0	0	0	0	0	0	0	79167000	31041000	48126000	9724	1406	9205	59973	80845	80845			1	
DVLSVAFSSDNR	0	Unmodified	1308.631	0.63099397	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	6.25	8	1	2			3	2	3		3	6	4	6	67.364	62.189	2;3	8.8844E-40	34222	160513_QHF_FH_JSI10Kac_4	199.11	189.9			1.0422	1.034	15.143	18	3	Median	1.2226	0.99095	11.732	3	1	Median	0.89418	1.0777	19.619	6	2	Median	1.0816	1.0642	9.2329	3	0	Median	0.96142	1.0179	10.706	6	0	Median	5784500000	2892700000	2891800000	1442400000	667490000	774900000	2202100000	1127900000	1074200000	220240000	118310000	101930000	1919800000	978990000	940770000	9725	2061	9206	59974;59975;59976;59977;59978;59979;59980;59981;59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992	80846;80847;80848;80849;80850;80851;80852;80853;80854;80855;80856;80857;80858;80859;80860;80861;80862;80863;80864;80865	80853			20	
DVLTAHPAAPGPVSR	0	Unmodified	1486.7892	0.78922595	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	40.225	39.31	2;3	0.0012496	33672	160511_QHF_FH_JSI11i_2	60.49	45.799			1.0415	1.0761	37.409	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84422	0.82601	NaN	1	1	Median	1.2849	1.402	NaN	1	0	Median	50051000	29432000	20619000	0	0	0	0	0	0	10865000	7692000	3173200	39186000	21740000	17446000	9726	620	9207	59993;59994;59995	80866;80867;80868	80868			3	
DVLTGQEFDVR	0	Unmodified	1277.6252	0.62518031	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.433	58.784	2	5.5804E-13	53258	160511_QHF_FH_JSI12i_1	168.83	162.24			1.0764	1.0069	12.993	4	0	Median	1.1466	0.95745	NaN	1	0	Median	0.73507	0.863	NaN	1	0	Median	1.1871	1.1671	NaN	1	0	Median	1.0106	1.0588	NaN	1	0	Median	814290000	381340000	432950000	209350000	95050000	114300000	158410000	76245000	82162000	204190000	85090000	119100000	242340000	124960000	117380000	9727	1558	9208	59996;59997;59998;59999	80869;80870;80871;80872;80873;80874;80875	80871			7	
DVLTSTYGATAETLSTSTTTHVTK	1	Unmodified	2484.2231	0.22314282	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	1	3	71.264	70.58	3	2.16E-16	63882	160511_QHF_FH_JSI10i_1	120	112.37			0.78668	0.83611	25.16	5	1	Median	0.78668	0.6704	NaN	1	0	Median	0.52964	0.62908	NaN	1	0	Median	0.94554	0.92407	NaN	1	0	Median	0.91982	0.99014	23.913	2	1	Median	247380000	130290000	117090000	31563000	15717000	15847000	63379000	38140000	25240000	55334000	26284000	29050000	97107000	50149000	46957000	9728	4719	9209	60000;60001;60002;60003;60004;60005;60006	80876;80877;80878;80879;80880;80881;80882;80883;80884	80881			9	
DVLVGADSVR	0	Unmodified	1029.5455	0.54547343	371	O43760	SYNGR2	Synaptogyrin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	49.309	40.064	2	0.011627	21878	160513_QHF_FH_JSI12Kac_3	56.729	8.4463			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9729	371	9210	60007;60008	80885;80886	80886			2	
DVLVLLMTDVLVFLQEK	1	Unmodified	1974.1111	0.11113694	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		12.3	1.81				5	4				2		5	6		107.21	98.911	2;3	1.2395E-69	60095	160513_QHF_FH_JSI10Kac_6	244.14	221.91			0.64939	0.78118	46.719	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.63663	0.76174	3.6842	2	0	Median	0.35127	0.33957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	235770000	136390000	99383000	0	0	0	223110000	133350000	89756000	12665000	3038000	9627500	0	0	0	9730	3915	9211	60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019	80887;80888;80889;80890;80891;80892;80893;80894;80895;80896;80897;80898	80897			12	
DVLYLSVIR	0	Unmodified	1076.623	0.62299547	5671	Q9Y5P4	COL4A3BP	Collagen type IV alpha-3-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	15	0								3				2	1	84.063	73.577	2	0.01031	38802	160513_QHF_FH_JSI11Kac_5	69.423	58.55			1.7467	1.8761	75.726	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0042	0.97842	92.064	2	2	Median	1.7467	1.9122	NaN	1	1	Median	4266500	1841000	2425500	0	0	0	0	0	0	3336800	1500400	1836500	929720	340680	589040	9731	5671	9212	60020;60021;60022	80899;80900;80901	80899			3	
DVLYPSLK	1	Unmodified	933.51713	0.51713341	1502	P40855	PEX19	Peroxisomal biogenesis factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	54.241	53.495	2	0.0066274	48618	160511_QHF_FH_JSI12i_1	61.999	24.979			0.75474	0.79344	18.667	3	1	Plateau	0.77778	0.64398	NaN	1	0	Median	0.47847	0.55594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75474	0.80542	NaN	1	0	Median	277130000	170160000	106970000	79899000	44236000	35664000	104180000	67978000	36197000	0	0	0	93058000	57949000	35110000	9732	1502	9213	60023;60024;60025	80902;80903;80904	80902			3	
DVMDALILK	1	Unmodified	1016.5576	0.55761802	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	83.32	82.854	2	0.00064398	75484	160511_QHF_FH_JSI11i_1	76.827	52.672			1.9619	1.7948	57.95	4	2	Median	2.2147	1.801	NaN	1	1	Median	0.78891	0.93737	NaN	1	0	Median	3.9733	3.8664	NaN	1	0	Median	1.7379	1.7887	NaN	1	1	Median	183370000	84669000	98703000	35125000	15087000	20038000	59651000	34927000	24723000	34330000	6393200	27937000	54267000	28262000	26005000	9733	3506	9214	60026;60027;60028;60029;60030	80905;80906;80907;80908;80909	80905			5	
DVMDSTTTQK	1	Unmodified	1124.502	0.50195363	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		15.697	15.453	2	5.2427E-09	12888	160511_QHF_FH_JSI11i_1	126.07	90.772			1.6038	1.8621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6038	1.8621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208680000	122500000	86178000	0	0	0	208680000	122500000	86178000	0	0	0	0	0	0	9734	3101	9215	60031;60032	80910;80911	80910			2	
DVMDSTTTQK	1	Oxidation (M)	1140.4969	0.49686826	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0			By MS/MS		12	0					2							2		8.8777	1.5926	2	0.0082874	2918	160513_QHF_FH_JSI11Kac_2	71.451	63.883			1.2893	1.2194	145.06	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2893	1.2194	145.06	2	2	Median	NaN	NaN	NaN	0	0	Median	3566800	1427000	2139800	0	0	0	0	0	0	3566800	1427000	2139800	0	0	0	9735	3101	9215	60033;60034	80912;80913	80912		2190	2	
DVMEGVTVDDHMMK	1	Unmodified	1605.6837	0.68369952	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	57.272	56.666	2;3	5.5533E-05	51272	160511_QHF_FH_JSI11i_1	144.65	109.42			0.85404	0.88223	41.119	5	1	Median	0.66212	0.53883	NaN	1	0	Median	0.56043	0.67477	NaN	1	0	Median	1.3687	1.3093	22.297	2	1	Median	0.85404	0.88223	NaN	1	0	Median	310530000	159440000	151080000	51982000	30630000	21352000	64942000	42296000	22646000	119980000	56329000	63651000	73622000	30189000	43433000	9736	2880	9216	60035;60036;60037;60038;60039	80914;80915;80916;80917	80914			2	
DVMGSSAGAGSGEFHVYR	0	Unmodified	1825.8053	0.8053463	4780	Q9H875	PRKRIP1	PRKR-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.08	48.554	3	0.00057585	41901	160511_QHF_FH_JSI11i_2	45.384	42.626			1.0029	0.99261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0029	0.99261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32959000	15277000	17682000	0	0	0	0	0	0	32959000	15277000	17682000	0	0	0	9737	4780	9217	60040	80918	80918			1	
DVMITGK	1	Unmodified	762.39458	0.39457544	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.191	24.897	2	0.014343	21893	160511_QHF_FH_JSI10i_1	67.032	42.034			0.71869	0.83451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71869	0.83451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70318000	38697000	31621000	0	0	0	70318000	38697000	31621000	0	0	0	0	0	0	9738	236	9218	60041	80919	80919			1	
DVMPEVNK	1	Oxidation (M)	946.44298	0.44298219	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	9				1	3				3	1	4	5	24.552	21.689	2	0.00097728	27776	160511_QHF_FH_JSI12i_1	101.28	61.621			1.0882	1.1045	64.09	12	5	Median	3.225	2.6414	86.232	3	2	Plateau	0.71966	0.8345	NaN	1	1	Median	1.6982	1.6581	78.034	4	2	Median	1.1372	1.1965	45.443	4	0	Median	2460300000	1191700000	1268600000	940460000	471000000	469460000	207480000	99599000	107880000	894300000	393120000	501190000	418060000	227950000	190110000	9739	856	9219	60042;60043;60044;60045;60046;60047;60048;60049;60050;60051;60052;60053;60054	80920;80921;80922;80923;80924;80925;80926;80927;80928;80929;80930;80931;80932;80933;80934	80924		386	15	
DVMPEVNK	1	Unmodified	930.44807	0.44806757	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.58	7	2	1		2	3	1			2	5	4	5	34.346	30.679	2	0.00012323	27795	160511_QHF_FH_JSI10i_1	127.12	76.152			0.92139	1.0178	59.998	14	9	Median	1.081	0.90526	83.559	2	2	Median	0.78499	0.93726	46.675	4	2	Median	1.0287	1.0181	82.693	3	2	Median	0.96891	1.0174	67.458	5	3	Median	18209000000	9525700000	8683000000	5270300000	2370600000	2899800000	3248400000	1907500000	1340800000	5691000000	2831500000	2859500000	3999000000	2416100000	1582900000	9740	856	9219	60055;60056;60057;60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070	80935;80936;80937;80938;80939;80940;80941;80942;80943;80944;80945;80946;80947;80948;80949;80950;80951;80952;80953;80954;80955;80956;80957;80958;80959;80960;80961;80962;80963	80951			29	
DVMPGPR	0	Unmodified	770.37451	0.3745087	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	20.448	19.623	2	0.014587	17087	160511_QHF_FH_JSI12i_1	66.138	52.466			1.0188	0.92796	16.901	2	2	Median	1.0195	0.82343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0182	1.0458	NaN	1	1	Median	113730000	63763000	49967000	59292000	33309000	25983000	0	0	0	0	0	0	54438000	30454000	23984000	9741	1637	9220	60071;60072	80964;80965	80964			2	
DVMQNHLLQMLCLVAMEK	1	Unmodified	2172.0564	0.056357726	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.83	6.49		3	1						2		2	2	2	100.66	98.071	3	1.0841E-24	48273	160513_QHF_FH_JSI12Kac_6	155.49	135.44			0.95469	1.011	20.173	6	0	Median	NaN	NaN	NaN	0	0	Median	0.83813	1.0107	6.1893	2	0	Median	0.87679	0.86146	16.488	2	0	Median	1.1932	1.2991	3.0775	2	0	Median	742620000	372840000	369790000	0	0	0	223960000	112270000	111700000	311040000	174970000	136060000	207620000	85596000	122030000	9742	1000	9221	60073;60074;60075;60076;60077;60078	80966;80967;80968;80969;80970;80971;80972;80973;80974;80975	80972			10	
DVMSDLQQTNSEK	1	Unmodified	1493.6668	0.66678713	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			46.216	45.79	2	0.00040321	41187	160511_QHF_FH_JSI10i_1	70.488	56.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9743	1599	9222	60079	80976	80976			1	
DVNAAIAAIK	1	Unmodified	984.5604	0.56039521	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	8					4	2			3	4	4	3	57.983	53.621	2	6.0199E-07	52668	160511_QHF_FH_JSI11i_1	120.99	87.438			2.0939	2.4594	182.33	12	11	Median	1.0805	0.83143	126.04	3	2	Median	2.0939	2.4594	157.2	4	4	Median	1.2199	1.1858	300.1	2	2	Median	10.461	11.242	279.02	3	3	Median	2792800000	1395400000	1397400000	717440000	288410000	429030000	722530000	408120000	314420000	719260000	352080000	367190000	633550000	346800000	286740000	9744	2074	9223	60080;60081;60082;60083;60084;60085;60086;60087;60088;60089;60090;60091;60092;60093	80977;80978;80979;80980;80981;80982;80983;80984;80985;80986;80987;80988;80989;80990	80977			14	
DVNAAIATIK	1	Unmodified	1014.571	0.5709599	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.04	11	3	3		4	6	3	1	2	9	9	7	8	56.203	50.819	1;2	1.8732E-10	27831	160513_QHF_FH_JSI11Kac_3	136.63	97.613			4.0488	4.3443	207.16	33	28	Median	2.9898	2.3825	151.15	9	6	Median	5.2373	6.2973	252.6	9	8	Median	5.2567	5.0588	240.77	7	7	Median	6.5852	7.0812	207.19	8	7	Median	55074000000	27586000000	27487000000	15460000000	7579300000	7881100000	13369000000	7567300000	5801900000	12722000000	6776300000	5945700000	13522000000	5663500000	7858500000	9745	2073;4359	9224	60094;60095;60096;60097;60098;60099;60100;60101;60102;60103;60104;60105;60106;60107;60108;60109;60110;60111;60112;60113;60114;60115;60116;60117;60118;60119;60120;60121;60122;60123;60124;60125;60126	80991;80992;80993;80994;80995;80996;80997;80998;80999;81000;81001;81002;81003;81004;81005;81006;81007;81008;81009;81010;81011;81012;81013;81014;81015;81016;81017;81018;81019;81020;81021;81022;81023;81024;81025;81026;81027;81028;81029;81030;81031;81032;81033;81034;81035	81010			44	
DVNAAIATIKTK	2	Acetyl (K)	1285.7242	0.72416608	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.9	0.35					1	6					3	2	2	75.26	66.765	2	4.9061E-05	33346	160513_QHF_FH_JSI12Kac_3	103.88	67.547			0.029276	0.033882	318.15	5	5	Median	NaN	NaN	NaN	0	0	Median	0.5362	0.63279	413.98	2	2	Median	0.012425	0.011938	NaN	1	1	Median	0.33945	0.36871	347.9	2	2	Median	22154000	13057000	9096100	0	0	0	9692200	4470000	5222300	4909400	3409300	1500200	7551900	5178200	2373700	9746	2073;4359	9225	60127;60128;60129;60130;60131;60132;60133	81036;81037;81038;81039;81040;81041;81042	81040	2157		7	
DVNCPFK	1	Unmodified	878.39564	0.39563807	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	28.482	28.12	2	0.011877	24864	160511_QHF_FH_JSI10i_1	70.268	49.747			0.9221	0.89186	27.254	3	1	Median	NaN	NaN	NaN	0	0	Median	1.044	1.2121	NaN	1	0	Median	0.9221	0.89186	NaN	1	0	Median	0.66854	0.70383	NaN	1	1	Median	212210000	100330000	111880000	0	0	0	70644000	30667000	39977000	79251000	39984000	39267000	62319000	29684000	32635000	9747	5486	9226	60134;60135;60136;60137	81043;81044;81045;81046	81046			4	
DVNEGETSDGVRK	1	Unmodified	1404.6481	0.6481006	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.189	10.789	2	0.0012132	8308	160511_QHF_FH_JSI9i_1	84.658	68.434			0.45046	0.53353	54.543	3	3	Median	1.2589	1.0474	NaN	1	1	Median	0.45046	0.53353	NaN	1	1	Median	0.38207	0.35578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140240000	76907000	63331000	22633000	6796300	15837000	53033000	35320000	17713000	50324000	34791000	15533000	14248000	0	14248000	9748	5675	9227	60138;60139;60140;60141	81047;81048;81049;81050	81050			4	
DVNFEFPEFQL	0	Unmodified	1383.6347	0.63468237	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.854	8	3	4							2	5	4	4	102.89	102.81	1;2	1.0846E-28	93633	160511_QHF_FH_JSI10i_1	192.64	188.62			0.9377	0.989	14.922	14	0	Median	1.1985	0.97789	3.6459	2	0	Median	0.80292	0.9638	10.501	4	0	Median	0.96209	0.92275	22.946	4	0	Median	0.94781	1.0018	17.444	4	0	Median	3527000000	1872800000	1654300000	357970000	184760000	173210000	1164200000	561550000	602670000	903380000	529420000	373960000	1101500000	597050000	504420000	9749	1979	9228	60142;60143;60144;60145;60146;60147;60148;60149;60150;60151;60152;60153;60154;60155;60156	81051;81052;81053;81054;81055;81056;81057;81058;81059;81060;81061;81062;81063;81064;81065;81066	81061			16	
DVNFSEEEFQK	1	Unmodified	1370.599	0.59902514	2882	Q5EBL4	RILPL1	RILP-like protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			54.116	53.717	2	5.667E-05	48468	160511_QHF_FH_JSI10i_1	97.456	67.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9750	2882	9229	60157	81067	81067			1	
DVNGELIAVQR	0	Unmodified	1212.6463	0.64625011	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.57	5.42	2					5				1	2	3	1	58.029	50.865	2	5.6712E-07	26193	160513_QHF_FH_JSI10Kac_3	107.79	76.366			1.3052	1.488	34.448	4	2	Median	NaN	NaN	NaN	0	0	Median	1.3279	1.5703	NaN	1	0	Median	1.2981	1.26	56.791	2	1	Median	1.2829	1.4099	NaN	1	1	Median	80638000	33275000	47363000	0	0	0	2944800	1070700	1874100	75680000	31067000	44614000	2012800	1137800	874960	9751	3896	9230	60158;60159;60160;60161;60162;60163;60164	81068;81069;81070;81071;81072;81073;81074	81073			7	
DVNQQEFVR	0	Unmodified	1133.5465	0.54653606	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	5.89	6	3	1		2	4	4			4	6	6	4	34.367	29.303	2	3.6113E-24	17736	160513_QHF_FH_JSI11Kac_3	186.16	160.6			0.88952	0.90833	55.026	18	12	Median	0.98054	0.8258	74.141	4	3	Median	0.60184	0.73321	34.181	5	4	Median	1.19	1.1773	60.747	6	4	Median	0.86795	0.91382	51.467	3	1	Plateau	16965000000	8489200000	8475900000	4828300000	2418500000	2409800000	3040800000	1818700000	1222200000	5495900000	2588800000	2907000000	3600100000	1663200000	1936900000	9752	1483	9231	60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175;60176;60177;60178;60179;60180;60181;60182;60183;60184	81075;81076;81077;81078;81079;81080;81081;81082;81083;81084;81085;81086;81087;81088;81089;81090;81091;81092;81093;81094;81095;81096;81097;81098;81099;81100;81101;81102	81084			28	
DVNQQEFVRALAAFLK	1	Unmodified	1847.9894	0.98938232	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	102.27	102.25	3	2.0457E-08	90780	160511_QHF_FH_JSI10i_2	133.66	115.06			0.36717	0.37166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36717	0.37166	NaN	1	1	Median	193110000	155610000	37497000	0	0	0	22605000	22605000	0	0	0	0	170500000	133000000	37497000	9753	1483	9232	60185;60186	81103;81104	81103			2	
DVNSLLK	1	Unmodified	787.44397	0.44396847	5176	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	44.737	44.074	2	0.017489	39706	160511_QHF_FH_JSI11i_1	62.659	8.4536			1.8773	1.6763	107.05	4	4	Median	1.3676	1.1376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84987	0.81307	157.14	2	2	Median	2.6968	2.7088	NaN	1	1	Median	129760000	57976000	71780000	33337000	12595000	20742000	0	0	0	68582000	37580000	31003000	27837000	7801400	20035000	9754	5176	9233	60187;60188;60189;60190	81105;81106;81107;81108	81105			4	
DVNSSSPVMLAFK	1	Unmodified	1393.6912	0.69115139	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	76.78	74.289	2	3.6776E-15	66999	160511_QHF_FH_JSI9i_1	156.48	97.5			1.1473	1.175	21.376	5	1	Median	1.0816	0.89624	NaN	1	0	Median	0.92925	1.084	36.061	2	1	Median	1.1925	1.175	NaN	1	0	Median	1.1473	1.1985	NaN	1	0	Median	665190000	315290000	349900000	160270000	69287000	90988000	160400000	93872000	66532000	179810000	75224000	104580000	164700000	76908000	87795000	9755	4292	9234	60191;60192;60193;60194;60195	81109;81110;81111;81112;81113;81114;81115;81116	81116			8	
DVNTAVMELLIMAYALK	1	Unmodified	1893.9944	0.99439262	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	6.24		3							8	2	1	6	2	104.4	98.16	2;3	1.3953E-69	54852	160513_QHF_FH_JSI9Kac_6	260.08	229.19			0.94204	1.0154	32.641	10	6	Median	0.68858	0.59201	NaN	1	1	Median	0.77149	0.92028	NaN	1	0	Median	1.0146	1.0055	34.618	6	5	Median	1.0788	1.179	7.214	2	0	Median	245170000	130910000	114260000	12252000	7496100	4755900	156800000	84826000	71971000	53741000	26903000	26838000	22378000	11688000	10690000	9756	2543	9235	60196;60197;60198;60199;60200;60201;60202;60203;60204;60205;60206	81117;81118;81119;81120;81121;81122;81123;81124;81125;81126;81127;81128;81129;81130;81131	81124			15	
DVNTDFLLILLK	1	Unmodified	1402.8072	0.80716742	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	5.5	6.06		3							1	1	1	1	1	102.43	100.92	2	2.5291E-24	55303	160513_QHF_FH_JSI10Kac_6	170.89	121.08			0.63175	0.67344	23.177	4	0	Median	0.58841	0.51076	NaN	1	0	Median	0.59471	0.67932	NaN	1	0	Median	0.67109	0.66761	NaN	1	0	Median	0.80877	0.90079	NaN	1	0	Median	132690000	74278000	58408000	14863000	9476500	5386600	59402000	30139000	29264000	42826000	25968000	16858000	15594000	8694000	6900200	9757	3221	9236	60207;60208;60209;60210	81132;81133	81133			2	
DVNVNFEK	1	Unmodified	963.46616	0.46616048	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	5.89	8	1	5			5	6			3	8	7	7	42.702	37.767	2	0.0007758	20350	160513_QHF_FH_JSI10Kac_3	114.89	71.648			0.85455	0.96694	122.93	22	22	Median	2.7595	2.246	188.84	3	3	Median	0.75969	0.89593	128.19	8	8	Median	0.99233	0.98765	119.2	6	6	Median	0.56351	0.61324	120.91	5	5	Median	18501000000	9355400000	9145700000	3051500000	1543700000	1507800000	5458600000	2840400000	2618200000	5014000000	2535000000	2478900000	4977000000	2436300000	2540700000	9758	2642	9237	60211;60212;60213;60214;60215;60216;60217;60218;60219;60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231;60232;60233;60234;60235	81134;81135;81136;81137;81138;81139;81140;81141;81142;81143;81144;81145;81146;81147;81148;81149;81150;81151;81152;81153;81154;81155;81156;81157;81158;81159;81160;81161;81162;81163	81162			30	
DVNVNFEKSK	2	Acetyl (K)	1220.6037	0.60371659	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	1.31				2	7	11	5	5	2	6	8	9	9	50.72	40.395	2;3	3.9421E-33	6753	160513_QHF_FH_JSI9Kac_3	190.86	143.78			1.1066	1.1944	340.67	29	24	Median	2.1111	1.7406	140.59	4	2	Median	0.51386	0.60443	399.88	8	7	Median	1.3777	1.3463	356.66	9	8	Median	0.36813	0.39834	363.32	8	7	Median	5772300000	2691900000	3080400000	2907700000	1317400000	1590400000	874950000	439070000	435870000	816250000	414810000	401440000	1173300000	520660000	652670000	9759	2642	9238	60236;60237;60238;60239;60240;60241;60242;60243;60244;60245;60246;60247;60248;60249;60250;60251;60252;60253;60254;60255;60256;60257;60258;60259;60260;60261;60262;60263;60264;60265;60266;60267	81164;81165;81166;81167;81168;81169;81170;81171;81172;81173;81174;81175;81176;81177;81178;81179;81180;81181;81182;81183;81184;81185;81186;81187;81188;81189;81190;81191;81192;81193;81194;81195;81196;81197;81198;81199;81200;81201;81202;81203;81204	81177	2602		41	
DVNVVVVEGGPK	1	Unmodified	1210.6558	0.65575216	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0		By MS/MS			12.5	0.5					2	2					4			60.29	50.912	2	0.00016375	26154	160513_QHF_FH_JSI10Kac_3	93.258	81.032			0.50315	0.5746	143.59	2	2	Median	NaN	NaN	NaN	0	0	Median	0.50315	0.5746	143.59	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3015300	1597700	1417600	0	0	0	3015300	1597700	1417600	0	0	0	0	0	0	9760	327	9239	60268;60269;60270;60271	81205;81206;81207;81208	81207			4	
DVPAYSQDTFK	1	Unmodified	1269.5877	0.58773217	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	2	2	48.275	46.364	2	3.1319E-13	41484	160511_QHF_FH_JSI9i_1	150.08	128.61			0.97721	0.8043	81.899	7	5	Median	0.97721	0.8043	NaN	1	0	Median	0.81245	0.97899	119.79	2	2	Median	0.75047	0.72728	101.1	2	1	Median	1.0445	1.1104	116.7	2	2	Median	4733900000	2248200000	2485600000	800640000	371220000	429420000	1270600000	691170000	579450000	947570000	446770000	500800000	1715000000	739080000	975960000	9761	816	9240	60272;60273;60274;60275;60276;60277;60278	81209;81210;81211;81212;81213;81214;81215;81216;81217;81218;81219;81220;81221;81222;81223	81223			15	
DVPDHAVLEMK	1	Unmodified	1252.6122	0.61217279	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	3.59	4	5	1				1			3	3	3	2	48.925	47.189	2;3	5.4666E-08	42466	160511_QHF_FH_JSI10i_1	106.49	96.704			1.1807	1.2802	48.081	10	5	Median	1.8006	1.4997	70.071	2	1	Median	1.1355	1.3238	15.921	3	1	Median	1.8581	1.8732	84.109	3	2	Plateau	1.1184	1.2467	7.1923	2	1	Median	1008000000	440870000	567180000	133360000	48132000	85229000	291610000	140860000	150750000	474110000	208610000	265500000	108970000	43269000	65701000	9762	4442	9241	60279;60280;60281;60282;60283;60284;60285;60286;60287;60288;60289	81224;81225;81226;81227;81228;81229;81230;81231;81232;81233;81234;81235;81236;81237;81238;81239	81228			16	
DVPDSQQHPAPEK	1	Unmodified	1446.6739	0.67392142	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	15.241	14.797	2	7.4784E-07	12488	160511_QHF_FH_JSI12i_1	90.685	79.195			0.65721	0.70012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65721	0.70012	NaN	1	1	Median	40451000	24385000	16066000	0	0	0	0	0	0	0	0	0	40451000	24385000	16066000	9763	457	9242	60290;60291;60292	81240;81241;81242;81243	81243			4	
DVPDSQQHPAPEKSSK	2	Acetyl (K)	1790.8435	0.84350594	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		28.39	20.509	3	0.039721	12470	160513_QHF_FH_JSI11Kac_3	36.638	25.376			14.811	14.094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.811	14.094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2335000	46658	2288400	0	0	0	0	0	0	2335000	46658	2288400	0	0	0	9764	457	9243	60293	81244	81244			1	
DVPFGFQTVTSDVNK	1	Unmodified	1652.8046	0.80460124	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.39	8	1	4				3	1		3	6	4	4	81.19	79.086	2;3	9.9532E-40	73165	160511_QHF_FH_JSI12i_1	241.92	233.7			0.90577	0.8795	32.744	14	6	Median	0.96339	0.76867	38.359	3	1	Median	0.75835	0.89765	36.887	6	4	Median	0.89818	0.87938	7.0193	2	0	Median	1.0934	1.1626	25.666	3	1	Median	5679700000	2864400000	2815300000	1381000000	645840000	735160000	1444200000	688890000	755330000	1411500000	723070000	688460000	1442900000	806580000	636340000	9765	1464	9244	60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308;60309;60310	81245;81246;81247;81248;81249;81250;81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264;81265;81266;81267;81268;81269;81270;81271;81272;81273;81274;81275;81276;81277;81278	81258			34	
DVPFQVK	1	Unmodified	831.44905	0.44905385	5624	Q9Y4E5	ZNF451	Zinc finger protein 451	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	47.96	46.737	2	0.021461	42473	160511_QHF_FH_JSI12i_1	51.572	23.466			2.5289	2.0596	NaN	1	1	Median	2.5289	2.0596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14150000	4468300	9682100	14150000	4468300	9682100	0	0	0	0	0	0	0	0	0	9766	5624	9245	60311;60312	81279;81280	81279			2	
DVPFSVVYFPLFANLNQLGRPASEEK	1	Unmodified	2936.5072	0.50724401	4796	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		12.8	5.63			1						3	1	2	1		99.61	93.509	3	4.9746E-43	54170	160513_QHF_FH_JSI10Kac_6	171.72	151.22			0.91948	0.96839	5.4931	4	0	Median	1.1822	0.99029	NaN	1	0	Median	0.84779	0.99393	6.8429	2	0	Median	0.95801	0.91983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	805070000	421280000	383790000	193940000	90482000	103450000	355420000	201590000	153830000	255710000	129200000	126500000	0	0	0	9767	4796	9246	60313;60314;60315;60316	81281;81282;81283;81284;81285	81284			5	
DVPGGGPSSSAPAGAEADGPK	1	Unmodified	1822.8333	0.83333519	3519	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				33.937	32.682	2	3.8901E-05	28654	160511_QHF_FH_JSI9i_1	70.412	46.069			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9768	3519	9247	60317	81286	81286			1	
DVPLGTPLCIIVEK	1	Unmodified	1552.8535	0.85346569	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	100.8	100.71	2	0.00049981	91456	160511_QHF_FH_JSI11i_1	93.839	84.885			0.66709	0.71416	64.645	2	2	Median	NaN	NaN	NaN	0	0	Median	0.99279	1.128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44825	0.45215	NaN	1	1	Median	71497000	52457000	19040000	0	0	0	24705000	13778000	10927000	19657000	19657000	0	27135000	19022000	8113400	9769	970	9248	60318;60319;60320	81287;81288;81289	81287			3	
DVPLLPSDVK	1	Unmodified	1081.6019	0.60192568	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		66.474	65.881	2	0.0011006	59720	160511_QHF_FH_JSI10i_1	67.897	55.541			0.90688	0.98119	5.1538	3	0	Plateau	1.2864	1.0522	NaN	1	0	Median	0.84285	0.98119	NaN	1	0	Median	0.98255	0.95155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	301450000	150160000	151290000	91402000	40693000	50709000	105140000	63950000	41193000	104900000	45517000	59386000	0	0	0	9770	4856	9249	60321;60322;60323	81290;81291;81292;81293;81294	81293			5	
DVPLTAEEVEFVVEK	1	Unmodified	1702.8665	0.8665328	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	97.556	97.457	2	1.5892E-11	88561	160511_QHF_FH_JSI12i_1	107.09	82.297			0.67563	0.7131	94.874	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31803	0.36458	NaN	1	1	Median	1.4353	1.3948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29134000	17680000	11454000	0	0	0	14018000	11042000	2976900	15116000	6638600	8477100	0	0	0	9771	5034	9250	60324;60325;60326	81295;81296;81297;81298	81296			4	
DVPLTIK	1	Unmodified	784.46945	0.46945494	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	48.143	47.549	2	0.013827	42834	160511_QHF_FH_JSI11i_1	68.915	45.896			1.6425	1.6606	103.38	6	6	Median	4.5649	3.7323	NaN	1	1	Median	0.66022	0.77117	142.11	2	2	Median	0.84171	0.80999	113.77	2	2	Median	1.49	1.5228	NaN	1	1	Median	299620000	142380000	157240000	35674000	7810200	27864000	86757000	50967000	35790000	109550000	58196000	51354000	67642000	25412000	42231000	9772	802	9251	60327;60328;60329;60330;60331;60332	81299;81300;81301;81302;81303;81304	81299			6	
DVPMVEK	1	Unmodified	816.40514	0.40514012	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	33.857	33.167	2	0.009972	28962	160511_QHF_FH_JSI9i_1	67.032	50.878			1.1089	1.082	104.09	4	1	Median	1.4154	1.1638	NaN	1	0	Median	0.86869	1.0059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0269	2.1228	166.9	2	1	Median	283530000	134410000	149120000	80521000	39242000	41278000	100480000	50993000	49487000	0	0	0	102530000	44172000	58355000	9773	179	9252	60333;60334;60335;60336;60337	81305;81306;81307;81308	81308			4	
DVPNETLQVEEDDRPELPWWK	1	Unmodified	2594.2289	0.2288969	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							1	2	4	3	93.268	93.059	3	9.9208E-09	82609	160511_QHF_FH_JSI11i_3	98.816	94.627			1.3042	1.3936	18.532	6	5	Median	NaN	NaN	NaN	0	0	Median	1.1613	1.3351	23.045	2	2	Median	1.3159	1.236	19.445	3	2	Plateau	1.2046	1.2309	NaN	1	1	Median	328850000	155440000	173420000	0	0	0	48294000	19487000	28807000	169950000	76151000	93796000	110610000	59798000	50814000	9774	686	9253	60338;60339;60340;60341;60342;60343;60344;60345;60346;60347	81309;81310;81311;81312;81313;81314;81315;81316;81317;81318;81319;81320;81321;81322;81323	81311			15	
DVPNNQLR	0	Unmodified	954.48829	0.4882929	3291;4548	Q7Z739;Q9BYJ9	YTHDF3;YTHDF1	YTH domain-containing family protein 3;YTH domain-containing family protein 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	19.798	19.211	2	0.00079462	16662	160511_QHF_FH_JSI12i_1	98.133	68.795			1.4719	1.3581	60.273	3	1	Plateau	1.2558	1.0422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48046	0.47531	NaN	1	1	Median	1.5249	1.5542	NaN	1	0	Median	540550000	250760000	289800000	166420000	63023000	103400000	0	0	0	198400000	105460000	92942000	175730000	82272000	93459000	9775	3291;4548	9254	60348;60349;60350	81324;81325;81326;81327;81328	81326			5	
DVPPLSETEATPVPIK	1	Unmodified	1691.8982	0.89816728	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								3	1	2	2	74.337	73.765	2;3	1.0371E-07	65302	160511_QHF_FH_JSI9i_1	133.05	117.68			0.66988	0.72495	27.277	8	6	Median	0.64281	0.53195	23.628	3	1	Median	0.69808	0.81007	NaN	1	1	Median	0.85713	0.83188	46.572	2	2	Median	0.72276	0.75729	17.945	2	2	Median	686660000	410450000	276200000	207930000	116410000	91515000	103530000	68692000	34841000	185400000	105010000	80395000	189790000	120340000	69453000	9776	1298	9255	60351;60352;60353;60354;60355;60356;60357;60358	81329;81330;81331;81332;81333;81334;81335;81336;81337;81338;81339;81340;81341;81342;81343;81344;81345;81346	81344			18	
DVPSSEQPELFLK	1	Unmodified	1487.7508	0.75077476	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		71.397	70.742	2	0.035885	62906	160511_QHF_FH_JSI9i_1	46.955	28.896			0.3762	0.33676	49.276	2	2	Median	0.28783	0.23768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4917	0.47714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189410000	136890000	52518000	112930000	90643000	22286000	0	0	0	76477000	46245000	30232000	0	0	0	9777	2735	9256	60359;60360	81347;81348	81348			2	
DVPSWLK	1	Unmodified	843.44905	0.44905385	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	63.162	62.649	2	0.056414	56806	160511_QHF_FH_JSI10i_1	41.652	31.346			0.85341	0.90379	34.941	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6647	0.70594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0957	1.1571	NaN	1	0	Median	13305000	7460400	5844700	0	0	0	7137800	4120100	3017700	0	0	0	6167400	3340300	2827000	9778	2913	9257	60361;60362	81349	81349			1	
DVPVAEEVSALFAGELNPVAPK	1	Unmodified	2251.1736	0.17361385	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.81	102.72	3	5.0561E-19	93325	160511_QHF_FH_JSI12i_1	153.11	144.4			1.0184	1.0923	14.013	4	1	Median	1.0254	0.85575	NaN	1	1	Median	0.98147	1.1486	NaN	1	0	Median	1.1817	1.1552	NaN	1	0	Median	1.0114	1.0387	NaN	1	0	Median	284310000	143880000	140430000	23538000	10950000	12588000	107090000	47616000	59474000	83268000	48356000	34912000	70412000	36957000	33455000	9779	179	9258	60363;60364;60365;60366	81350;81351;81352;81353;81354	81352			5	
DVPVEALTTVK	1	Unmodified	1170.6496	0.64960415	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	67.146	64.276	2	0.00020426	58223	160511_QHF_FH_JSI12i_1	91.658	59.724			1.131	1.2398	71.116	7	5	Median	2.0507	1.6639	NaN	1	1	Median	0.26863	0.32199	NaN	1	1	Median	1.0427	0.98109	69.101	3	2	Median	1.4901	1.5763	33.96	2	1	Median	418070000	213450000	204620000	82423000	32850000	49573000	78082000	52156000	25926000	169690000	87331000	82363000	87866000	41113000	46753000	9780	2947	9259	60367;60368;60369;60370;60371;60372;60373	81355;81356;81357;81358;81359;81360	81357			6	
DVPVVAILGSGGGFR	0	Unmodified	1442.7882	0.78816332	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.48	5.79	4	8	5					5	1	5	4	8	6	97.392	95.545	2;3	2.6718E-10	86484	160511_QHF_FH_JSI11i_2	193.28	182.83			1.0422	0.99908	42.323	18	5	Median	1.2074	1.035	25.022	4	1	Median	0.76062	0.92004	78.527	3	1	Plateau	1.0411	0.96858	41.361	7	2	Median	0.82286	0.88584	12.722	4	1	Median	932750000	470170000	462580000	174570000	89531000	85036000	180290000	92667000	87623000	365150000	166350000	198800000	212740000	121620000	91117000	9781	1604	9260	60374;60375;60376;60377;60378;60379;60380;60381;60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396	81361;81362;81363;81364;81365;81366;81367;81368;81369;81370;81371;81372;81373;81374;81375;81376;81377;81378;81379;81380;81381;81382;81383;81384;81385;81386;81387;81388;81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400;81401;81402;81403	81385			43	
DVPVYLFSR	0	Unmodified	1094.576	0.57604528	3114	Q6PCE3	PGM2L1	Glucose 1,6-bisphosphate synthase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.825	78.105	2	0.013094	69549	160511_QHF_FH_JSI10i_2	56.729	45.856			0.59077	0.73334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59077	0.73334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10497000	5977200	4519400	0	0	0	10497000	5977200	4519400	0	0	0	0	0	0	9782	3114	9261	60397	81404	81404			1	
DVPYPPPLSPAIEAIQK	1	Unmodified	1833.9877	0.98765098	3567	Q8N8N7	PTGR2	Prostaglandin reductase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		96.49	96.127	2	0.035039	84940	160511_QHF_FH_JSI9i_1	45.257	29.991			0.96543	0.89277	9.2144	2	2	Median	0.93515	0.83645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99669	0.95287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15641000	6809400	8831700	4821800	2915800	1906100	0	0	0	10819000	3893700	6925600	0	0	0	9783	3567	9262	60398;60399	81405;81406	81406			2	
DVQDELR	0	Unmodified	873.41921	0.41921028	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	23.445	22.891	2	0.019269	19972	160511_QHF_FH_JSI11i_1	58.604	19.786			1.2277	1.4369	29.761	3	1	Plateau	1.0384	0.85741	NaN	1	1	Median	1.2277	1.4574	NaN	1	0	Median	1.416	1.4123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	354450000	150490000	203960000	89256000	36316000	52940000	133090000	54319000	78773000	132100000	59854000	72250000	0	0	0	9784	679	9263	60400;60401;60402;60403	81407;81408;81409;81410;81411;81412	81408			6	
DVQDSLTVSNEAQTAK	1	Unmodified	1704.8166	0.81662249	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.02	8		2		2					2	4	3	3	42.738	40.438	2;3	2.7968E-30	36638	160511_QHF_FH_JSI12i_1	231.06	211.82			1.1401	1.1524	48.796	10	3	Median	1.3001	1.0577	16.912	2	0	Median	1.0928	1.2776	13.112	2	0	Median	1.135	1.1026	60.81	3	1	Median	1.0874	1.1404	77.402	3	2	Median	2030600000	1070600000	959980000	404070000	188850000	215220000	588270000	334470000	253810000	561810000	300510000	261300000	476460000	246810000	229650000	9785	1788	9264	60404;60405;60406;60407;60408;60409;60410;60411;60412;60413;60414;60415	81413;81414;81415;81416;81417;81418;81419;81420;81421;81422;81423;81424;81425;81426;81427;81428;81429;81430;81431;81432;81433;81434	81420			22	
DVQEIATVVVPK	1	Unmodified	1296.7289	0.7289171	4385	Q9BRT6	LLPH	Protein LLP homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	74.664	74.129	2	2.1721E-06	67027	160511_QHF_FH_JSI10i_1	120.06	113.17			3.2643	3.3624	234.39	7	7	Median	1.6067	1.3231	400.49	2	2	Median	14.598	17.152	NaN	1	1	Median	1.3279	1.2983	298.49	2	2	Median	1.126	1.1835	147.67	2	2	Median	281410000	109650000	171760000	63082000	25988000	37093000	42635000	2971000	39664000	84554000	36235000	48319000	91139000	44454000	46685000	9786	4385	9265	60416;60417;60418;60419;60420;60421;60422	81435;81436;81437;81438;81439;81440;81441	81439			7	
DVQEIFR	0	Unmodified	905.46068	0.46068117	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.95	6	4					5			3	4	4	4	55.764	51.59	2	1.3567E-05	46864	160511_QHF_FH_JSI10i_1	144.83	94.794			1.9341	2.1632	139.61	15	12	Median	3.8137	3.1448	153.38	3	3	Median	1.6328	1.9246	161.2	4	3	Median	2.0081	1.9579	168.4	4	3	Median	0.94016	1.013	139.07	4	3	Median	8515700000	3250900000	5264800000	2240200000	873700000	1366500000	2193300000	886010000	1307300000	2898700000	913770000	1985000000	1183500000	577440000	606010000	9787	2474;97	9266	60423;60424;60425;60426;60427;60428;60429;60430;60431;60432;60433;60434;60435;60436;60437	81442;81443;81444;81445;81446;81447;81448;81449;81450;81451;81452;81453;81454;81455;81456;81457;81458;81459;81460	81451			19	
DVQELLTQYTK	1	Unmodified	1336.6874	0.68744622	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	4									2		2		79.261	78.662	2	3.4533E-06	71641	160511_QHF_FH_JSI11i_1	117.02	67.604			0.40283	0.3612	109.18	4	4	Median	0.53209	0.43726	115.1	2	2	Median	NaN	NaN	NaN	0	0	Median	0.25691	0.25121	139.43	2	2	Median	NaN	NaN	NaN	0	0	Median	405190000	226550000	178650000	190180000	94577000	95607000	0	0	0	215010000	131970000	83041000	0	0	0	9788	1929	9267	60438;60439;60440;60441	81461;81462;81463;81464	81462			4	
DVQEQLSR	0	Unmodified	973.48287	0.48287317	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	18.94	18.571	2	0.0090129	16063	160511_QHF_FH_JSI12i_1	62.546	0			1.0378	1.1598	11.586	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0584	1.2588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0176	1.0686	NaN	1	0	Median	867910000	424020000	443890000	0	0	0	417920000	197730000	220190000	0	0	0	450000000	226290000	223710000	9789	475	9268	60442;60443	81465;81466	81465			2	
DVQETLMPQVLTTLEEDSK	1	Unmodified	2175.0617	0.061680143	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		56.377	55.962	3	0.055999	50715	160511_QHF_FH_JSI11i_1	22.435	5.7505			0.20034	0.19681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20034	0.19681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41594000	22046000	19548000	0	0	0	0	0	0	41594000	22046000	19548000	0	0	0	9790	3382	9269	60444	81467	81467			1	
DVQFEHGYR	0	Unmodified	1149.5203	0.52032131	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	26.286	25.622	2	0.00019834	21372	160511_QHF_FH_JSI11i_2	102.51	92.603			0.87614	0.89127	69.561	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87614	0.89127	85.171	2	2	Median	0.44639	0.48771	NaN	1	1	Median	87734000	44164000	43570000	0	0	0	0	0	0	68690000	32038000	36653000	19043000	12126000	6917300	9791	3841	9270	60445;60446;60447;60448	81468;81469;81470;81471	81469			4	
DVQGTDASLDEELDRVK	1	Unmodified	1888.9014	0.90141475	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	60.759	60.118	2;3	5.919E-80	54522	160511_QHF_FH_JSI11i_1	253.15	227.11			0.89396	0.90205	15.274	8	0	Median	0.92395	0.7684	14.227	2	0	Median	0.85981	1.0405	14.303	2	0	Median	0.95562	0.92641	3.7145	2	0	Median	0.79963	0.82621	12.366	2	0	Median	1463200000	732060000	731170000	267150000	134770000	132390000	355490000	174050000	181440000	455460000	222980000	232480000	385120000	200250000	184870000	9792	5357	9271	60449;60450;60451;60452;60453;60454;60455;60456	81472;81473;81474;81475;81476;81477;81478;81479;81480;81481;81482;81483	81473			12	
DVQGWGENDR	0	Unmodified	1174.5003	0.50031415	1981;1980	P62140;P62136	PPP1CB;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	27.921	27.512	2	0.00012938	24274	160511_QHF_FH_JSI11i_1	97.965	86.814			0.4264	0.45212	103.62	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.64688	0.76857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1766	1.2291	141.43	2	1	Median	442300000	195210000	247090000	0	0	0	174750000	83362000	91389000	60121000	0	60121000	207430000	111850000	95576000	9793	1981;1980	9272	60457;60458;60459;60460	81484;81485;81486;81487	81484			4	
DVQGWGENDRGVSFTFGADVVSK	1	Unmodified	2469.1561	0.15606631	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	84.194	84.004	3	0.0090849	72955	160511_QHF_FH_JSI12i_3	34.217	26.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9794	1981	9273	60461	81488	81488			1	
DVQIGDIVTVGECRPLSK	1	Unmodified	1985.0252	0.025175478	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.61	3	13	5							3	5	5	8	76.503	75.887	2;3	6.7855E-10	65877	160511_QHF_FH_JSI12i_3	138.87	102.02			0.99806	0.99125	52.002	20	16	Median	2.2637	1.9084	78.985	3	3	Median	0.72646	0.86679	59.424	5	5	Median	0.97493	0.93104	31.378	5	3	Median	1.0918	1.2178	55.031	7	5	Median	1500900000	731400000	769500000	147650000	63319000	84329000	317090000	160650000	156430000	497870000	280520000	217350000	538290000	226900000	311390000	9795	1996	9274	60462;60463;60464;60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482	81489;81490;81491;81492;81493;81494;81495;81496;81497;81498;81499;81500;81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511;81512;81513;81514;81515;81516	81516			28	
DVQLQQK	1	Unmodified	857.46068	0.46068117	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.571	13.644	3	0.037809	10642	160511_QHF_FH_JSI12i_3	24.998	1.0263			1.7636	1.7654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7636	1.7654	NaN	1	0	Median	122710000	41149000	81558000	0	0	0	0	0	0	0	0	0	122710000	41149000	81558000	9796	2574	9275	60483	81517	81517			1	
DVQMLQDAISK	1	Unmodified	1246.6227	0.62273747	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.18	7					5	3			1	5	4	5	71.508	66.986	2	2.8753E-11	60252	160511_QHF_FH_JSI9i_1	194.54	133.95			1.7899	1.9359	228.68	13	13	Median	0.045902	0.03741	NaN	1	1	Median	0.79739	0.93016	223	5	5	Median	3.8287	4.1125	296.69	3	3	Median	2.5194	2.6983	223.6	4	4	Median	2258100000	1339800000	918230000	273460000	260740000	12720000	593670000	376070000	217600000	790210000	383190000	407020000	600710000	319820000	280890000	9797	2738	9276	60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497;60498	81518;81519;81520;81521;81522;81523;81524;81525;81526;81527;81528;81529;81530;81531;81532;81533;81534;81535	81530			18	
DVQMLQDAISK	1	Oxidation (M)	1262.6177	0.61765209	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						3						2	1	62.776	53.362	2	0.0014099	27558	160513_QHF_FH_JSI11Kac_3	84.17	66.734			1.9152	1.9256	222.77	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42375	0.39852	NaN	1	1	Median	8.6564	9.3039	NaN	1	1	Median	4230600	1712400	2518200	0	0	0	0	0	0	2597000	1633300	963630	1633700	79057	1554600	9798	2738	9276	60499;60500;60501	81536;81537;81538	81536		2116	3	
DVQNEHLTR	0	Unmodified	1110.5418	0.54178503	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				12.047	11.435	2	0.00091727	9150	160511_QHF_FH_JSI9i_2	76.827	62.669			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9799	1088	9277	60502	81539	81539			1	
DVQNFPAATDEK	1	Unmodified	1333.615	0.61500956	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	36.78	36.187	2	5.6033E-07	32581	160511_QHF_FH_JSI11i_1	107.11	84.374			0.30426	0.31017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30426	0.31017	NaN	1	1	Median	56198000	40264000	15935000	0	0	0	0	0	0	0	0	0	56198000	40264000	15935000	9800	432	9278	60503;60504	81540;81541	81540			2	
DVQPVAYEEPK	1	Unmodified	1273.619	0.6190323	4306	Q99717	SMAD5	Mothers against decapentaplegic homolog 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.001	36.521	2	0.0029557	33131	160511_QHF_FH_JSI12i_1	70.412	47.77			1.9809	2.1565	63.006	2	2	Median	NaN	NaN	NaN	0	0	Median	2.9607	3.3669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3253	1.3812	NaN	1	1	Median	51615000	20732000	30883000	0	0	0	21058000	4035100	17023000	0	0	0	30557000	16697000	13859000	9801	4306	9279	60505;60506;60507;60508	81542;81543;81544;81545	81543			4	
DVQQESSEQK	1	Unmodified	1176.5259	0.5258602	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0			By MS/MS		12	0					2							2		7.2982	0.012301	2	0.011952	2360	160513_QHF_FH_JSI11Kac_2	64.04	37.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1105100	550190	554880	0	0	0	0	0	0	1105100	550190	554880	0	0	0	9802	3653	9280	60509;60510	81546;81547	81547			2	
DVQSYYVFVSSWMMK	1	Unmodified	1868.8477	0.84772838	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		98.398	88.986	3	0.00020498	50934	160513_QHF_FH_JSI11Kac_6	74.786	65.037			1.3026	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3026	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52620000	28360000	24260000	0	0	0	0	0	0	52620000	28360000	24260000	0	0	0	9803	2793	9281	60511	81548	81548			1	
DVQTALALAK	1	Unmodified	1028.5866	0.58660996	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	5.95	8	1			3	5	5			3	8	5	6	61.781	55.406	2	3.7094E-13	6973	160513_QHF_FH_JSI9Kac_3	160.59	113.52			0.6982	0.6866	173.27	18	17	Median	1.0938	0.89323	204.45	3	2	Median	1.151	1.3649	190.04	6	6	Median	0.25899	0.25398	194.36	5	5	Median	0.61949	0.68084	171.63	4	4	Median	5871500000	2662300000	3209200000	1151900000	515700000	636240000	1359100000	705230000	653880000	1664600000	796670000	867890000	1695900000	644700000	1051100000	9804	4304	9282	60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533	81549;81550;81551;81552;81553;81554;81555;81556;81557;81558;81559;81560;81561;81562;81563;81564;81565;81566;81567;81568;81569;81570;81571;81572;81573;81574;81575;81576	81564			28	
DVQTALALAKGK	2	Acetyl (K)	1255.7136	0.71360139	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						2	2				1	3		79.199	69.271	2	0.00019549	36560	160513_QHF_FH_JSI11Kac_4	93.258	66.815			8.7579	10.234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.7579	10.234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6088800	4221600	1867200	0	0	0	1411000	98260	1312800	4677800	4123400	554380	0	0	0	9805	4304	9283	60534;60535;60536;60537	81577;81578;81579;81580	81579	3118		4	
DVQVLFMR	0	Oxidation (M)	1022.5219	0.52190122	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	15	0								4			2	1	1	71.321	60.655	2	0.024766	30091	160513_QHF_FH_JSI12Kac_5	60.972	42.19			0.26831	0.24907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26831	0.24907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2540500	1605700	934800	0	0	0	1562500	787370	775110	978040	818350	159690	0	0	0	9806	211	9284	60538;60539;60540;60541	81581;81582;81583;81584	81582			4	
DVRWPTETDVSSAK	1	Unmodified	1589.7686	0.76855009	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	49.39	47.992	3	0.048548	41102	160511_QHF_FH_JSI12i_2	32.715	19.923			2.0652	2.2276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0652	2.2276	NaN	1	1	Median	45117000	15944000	29173000	0	0	0	0	0	0	0	0	0	45117000	15944000	29173000	9807	1298	9285	60542	81585	81585			1	
DVSALTK	1	Unmodified	732.40177	0.4017693	4968	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	24.877	24.338	2	0.024227	21825	160511_QHF_FH_JSI12i_1	49.097	17.161			6.382	6.4261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.382	6.4261	NaN	1	1	Median	28320000	5469800	22850000	0	0	0	0	0	0	0	0	0	28320000	5469800	22850000	9808	4968	9286	60543;60544	81586;81587	81587			2	
DVSAQATGK	1	Unmodified	875.43486	0.43486035	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.27	6		2		2					1	4	2	3	9.5716	7.6769	2	4.535E-08	6634	160511_QHF_FH_JSI12i_1	153.08	110.08			0.99355	0.81998	115.48	9	8	Median	0.99355	0.81998	NaN	1	0	Median	0.87389	1.0235	126.32	4	4	Median	0.71173	0.69394	148.22	2	2	Median	1.008	1.064	186.59	2	2	Median	4616600000	2499700000	2116800000	737530000	364640000	372900000	895800000	505770000	390030000	1618600000	1033500000	585060000	1364700000	595840000	768860000	9809	1664	9287	60545;60546;60547;60548;60549;60550;60551;60552;60553;60554	81588;81589;81590;81591;81592;81593;81594;81595;81596;81597;81598	81591			11	
DVSELTGFPEMLGGR	0	Unmodified	1606.7661	0.76610724	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								2	5	3	3	96.929	96.69	2;3	2.0654E-137	85757	160511_QHF_FH_JSI9i_1	290.07	271.8			0.77618	0.7839	28.067	10	4	Median	0.99247	0.83813	16.917	2	0	Median	0.67538	0.82634	44.545	3	2	Median	0.69788	0.93935	19.849	3	1	Plateau	0.88302	0.93706	38.935	2	1	Median	1003900000	475210000	528690000	193880000	79542000	114340000	321790000	171310000	150480000	251650000	101380000	150260000	236580000	122970000	113610000	9810	1381	9288	60555;60556;60557;60558;60559;60560;60561;60562;60563;60564;60565;60566;60567	81599;81600;81601;81602;81603;81604;81605;81606;81607;81608;81609;81610;81611;81612;81613;81614;81615;81616;81617;81618;81619;81620;81621	81614			23	
DVSGLHSK	1	Unmodified	841.42938	0.42938104	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	9.4331	9.0071	2	0.02445	6665	160511_QHF_FH_JSI11i_2	44.377	29.602			0.63471	0.67206	40.341	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49356	0.50527	NaN	1	1	Median	0.81623	0.89391	NaN	1	1	Median	79096000	49551000	29545000	0	0	0	0	0	0	57733000	35441000	22293000	21363000	14110000	7252100	9811	1779	9289	60568;60569;60570	81622;81623;81624	81624			3	
DVSGPMPDSYSPR	0	Unmodified	1406.6136	0.61362935	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	46.297	41.936	2	1.1503E-52	38302	160511_QHF_FH_JSI12i_1	212.82	203.46			0.98484	1.0161	5.7164	7	0	Median	1.2208	1.0003	NaN	1	0	Median	0.89233	1.0364	2.7982	2	0	Median	1.0328	0.99325	6.4811	2	0	Median	0.93235	1.0069	11.233	2	0	Median	1589100000	763940000	825130000	312600000	141220000	171380000	421790000	222830000	198960000	508670000	218560000	290120000	346010000	181330000	164670000	9812	1283	9290	60571;60572;60573;60574;60575;60576;60577	81625;81626;81627;81628;81629;81630;81631;81632;81633;81634;81635;81636;81637;81638	81628			14	
DVSGPMPDSYSPR	0	Oxidation (M)	1422.6085	0.60854397	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	1	0	By MS/MS		By MS/MS		5	5.66	2					1				1		2		43.587	42.37	2	0.0035301	37600	160511_QHF_FH_JSI9i_1	78.342	60.03			0.17997	0.14709	NaN	1	1	Median	0.17997	0.14709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16879000	13242000	3637300	16879000	13242000	3637300	0	0	0	0	0	0	0	0	0	9813	1283	9290	60578;60579;60580	81639;81640;81641	81641		919	3	
DVSLGDWEFGK	1	Unmodified	1251.5772	0.57716749	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				82.023	81.176	2	0.0079705	72209	160511_QHF_FH_JSI9i_1	51.092	32.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9814	4581	9291	60581	81642	81642			1	
DVSLGDWEFGKR	1	Unmodified	1407.6783	0.67827852	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.744	68.447	2	0.0027924	59248	160511_QHF_FH_JSI12i_3	74.841	48.327			1.6555	1.6915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6555	1.6915	NaN	1	1	Median	15950000	2943600	13006000	0	0	0	0	0	0	0	0	0	15950000	2943600	13006000	9815	4581	9292	60582	81643	81643			1	
DVSLLTQK	1	Unmodified	902.5073	0.50729701	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.08	8				1	6	4			2	6	6	5	50.698	44.893	2	3.1278E-10	40335	160511_QHF_FH_JSI9i_1	163.67	117.01			0.36603	0.42266	386.55	15	15	Median	0.96883	0.78818	623.69	2	2	Median	2.1884	2.5579	380.31	4	4	Median	11.201	11.077	407.35	5	5	Median	0.034236	0.03687	402.66	4	4	Median	3362500000	1722000000	1640500000	694340000	304540000	389800000	862160000	465380000	396780000	847410000	405700000	441720000	958530000	546370000	412170000	9816	4027	9293	60583;60584;60585;60586;60587;60588;60589;60590;60591;60592;60593;60594;60595;60596;60597;60598;60599;60600;60601	81644;81645;81646;81647;81648;81649;81650;81651;81652;81653;81654;81655;81656;81657;81658;81659;81660;81661;81662;81663;81664;81665;81666;81667;81668;81669	81664			26	
DVSLLTQKLK	2	Acetyl (K)	1185.6969	0.69688869	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.722						5	5	2			3	6	3	83.049	73.406	2	1.1314E-10	38111	160513_QHF_FH_JSI12Kac_4	142.92	96.765			0.63888	0.67268	89.628	6	6	Median	NaN	NaN	NaN	0	0	Median	0.46782	0.55274	24.053	2	2	Median	0.87001	0.86119	117.54	3	3	Median	0.63646	0.6906	NaN	1	1	Median	110810000	81866000	28947000	0	0	0	27775000	18813000	8961700	67284000	50550000	16734000	15754000	12503000	3251100	9817	4027	9294	60602;60603;60604;60605;60606;60607;60608;60609;60610;60611;60612;60613	81670;81671;81672;81673;81674;81675;81676;81677;81678;81679;81680;81681	81677	3035		12	
DVSSVELLMNNHQGIK	1	Unmodified	1782.8934	0.89343302	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	70.441	69.744	2	1.6899E-07	61109	160511_QHF_FH_JSI11i_2	165.11	140.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20343000	11471000	8872300	3240900	3240900	0	0	0	0	17102000	8229900	8872300	0	0	0	9818	2162	9295	60614;60615;60616;60617	81682;81683;81684;81685	81685			4	
DVSVAELLR	0	Unmodified	1000.5553	0.55530983	839	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	75.065	74.627	2	0.0045667	67903	160511_QHF_FH_JSI11i_1	66.692	49.765			1.716	1.6915	52.212	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2133	1.1693	NaN	1	1	Median	2.4269	2.4469	NaN	1	1	Median	37401000	11974000	25427000	0	0	0	0	0	0	19752000	6346800	13405000	17650000	5627600	12022000	9819	839	9296	60618;60619	81686;81687	81686			2	
DVSVPVAEIK	1	Unmodified	1055.5863	0.58627561	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	57.689	56.791	2	4.9264E-05	50488	160511_QHF_FH_JSI9i_1	93.111	70.979			0.91251	0.84105	17.459	2	0	Median	0.91908	0.74337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.906	0.95157	NaN	1	0	Median	107670000	56119000	51556000	68742000	36058000	32684000	0	0	0	0	0	0	38932000	20061000	18871000	9820	3163	9297	60620;60621;60622	81688;81689;81690;81691;81692	81692			5	
DVSYLYR	0	Unmodified	914.44978	0.44978213	1074	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			2	2	1	3	46.177	44.235	2	2.4639E-05	40224	160511_QHF_FH_JSI12i_1	148.28	62.169			0.24608	0.24521	161.24	8	8	Median	1.0281	0.82653	202.81	2	2	Median	1.1045	1.2926	211.75	2	2	Median	0.17187	0.16683	NaN	1	1	Median	0.19873	0.20791	178.22	3	3	Median	1915100000	1094500000	820630000	499510000	257760000	241750000	487090000	245790000	241300000	360880000	256040000	104840000	567600000	334870000	232730000	9821	1074	9298	60623;60624;60625;60626;60627;60628;60629;60630	81693;81694;81695;81696;81697;81698;81699;81700;81701	81694			9	
DVSYQGGKSIK	2	Acetyl (K)	1222.6194	0.61936665	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.716					4	5	2				5	2	4	41.445	32.443	2	1.0553E-17	17755	160513_QHF_FH_JSI10Kac_3	163.64	130.52			19.042	18.789	335.36	7	7	Median	NaN	NaN	NaN	0	0	Median	1.1337	1.3461	357.98	3	3	Plateau	0.99219	0.97908	417.82	2	2	Median	1.9392	2.0802	466.82	2	2	Median	84483000	33533000	50950000	0	0	0	38580000	21404000	17176000	17372000	8300700	9071400	28531000	3828800	24702000	9822	3647	9299	60631;60632;60633;60634;60635;60636;60637;60638;60639;60640;60641	81702;81703;81704;81705;81706;81707;81708;81709;81710;81711;81712	81710	2901		11	
DVTADFEGQSPK	1	Unmodified	1292.5885	0.58846046	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.243	40.624	2	0.0023558	36779	160511_QHF_FH_JSI12i_1	70.942	51.699			1.847	1.9062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.847	1.9062	NaN	1	1	Median	72499000	27006000	45494000	0	0	0	0	0	0	0	0	0	72499000	27006000	45494000	9823	5305	9300	60642	81713	81713			1	
DVTATVDSLPLITASILSK	1	Unmodified	1943.0827	0.082673582	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	102.82	102.71	2;3	1.8064E-18	93538	160511_QHF_FH_JSI10i_1	204.35	186.54			0.75528	0.798	35.773	6	1	Median	0.97588	0.7917	67.368	2	0	Median	0.50396	0.58566	NaN	1	0	Median	1.1223	1.0699	NaN	1	1	Median	0.75528	0.798	6.6255	2	0	Median	190700000	107640000	83060000	23092000	12096000	10996000	49545000	26698000	22847000	38381000	19880000	18501000	79678000	48962000	30716000	9824	1167	9301	60643;60644;60645;60646;60647;60648	81714;81715;81716;81717;81718	81718			5	
DVTEAEQAEEQARQEEQVVR	0	Unmodified	2343.0939	0.093859983	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	55.885	55.23	3	1.5467E-15	49095	160511_QHF_FH_JSI9i_1	155.03	146.64			1.6452	1.3553	71.572	7	5	Median	0.88491	0.72182	89.098	2	1	Median	1.1936	1.442	87.885	2	2	Median	1.232	1.1795	90.555	2	2	Median	1.6452	1.694	NaN	1	0	Median	481620000	232150000	249470000	134240000	75202000	59042000	145880000	82644000	63239000	130050000	53705000	76341000	71446000	20593000	50852000	9825	2304	9302	60649;60650;60651;60652;60653;60654;60655	81719;81720;81721;81722;81723;81724;81725;81726	81725			8	
DVTEVLILQLFSQIGPCK	1	Unmodified	2059.1024	0.10236317	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.15	96.426	3	0.00015623	56998	160513_QHF_FH_JSI10Kac_6	101.05	77.955			0.63759	0.73692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63759	0.73692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54140000	33984000	20156000	0	0	0	54140000	33984000	20156000	0	0	0	0	0	0	9826	2163	9303	60656	81727	81727			1	
DVTFNLK	1	Unmodified	835.44397	0.44396847	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				50.675	49.465	2	0.024235	43995	160511_QHF_FH_JSI9i_1	58.167	23.062			0.58929	0.48941	NaN	1	1	Median	0.58929	0.48941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38230000	21741000	16489000	38230000	21741000	16489000	0	0	0	0	0	0	0	0	0	9827	4248	9304	60657	81728	81728			1	
DVTGAEALLER	0	Unmodified	1172.6037	0.60371659	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	64.204	63.721	2	1.3097E-05	57846	160511_QHF_FH_JSI11i_1	107.45	63.943			0.46573	0.48597	38.782	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.89476	1.0402	NaN	1	1	Median	0.64633	0.62439	NaN	1	1	Median	0.46571	0.48597	NaN	1	1	Median	463040000	242800000	220240000	0	0	0	149360000	62260000	87103000	159470000	79318000	80149000	154210000	101220000	52990000	9828	2470	9305	60658;60659;60660	81729;81730;81731	81729			3	
DVTIGGSAPIYVK	1	Unmodified	1318.7133	0.71326704	3739	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.258	62.877	2	0.0035303	57172	160511_QHF_FH_JSI10i_1	63.624	46.992			0.56368	0.65997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56368	0.65997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87936000	55170000	32766000	0	0	0	87936000	55170000	32766000	0	0	0	0	0	0	9829	3739	9306	60661	81732	81732			1	
DVTLENR	0	Unmodified	845.4243	0.42429566	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	2	3	4	19.056	16.731	2	0.00054528	14424	160511_QHF_FH_JSI11i_1	143.02	86.993			0.52029	0.56417	91.006	11	11	Median	0.8692	0.71352	91.813	2	2	Median	0.63787	0.74886	122.84	2	2	Median	0.50547	0.49114	123.09	3	3	Median	0.92884	0.99732	94.108	4	4	Median	2082500000	1123800000	958710000	625080000	308080000	317000000	543510000	315110000	228410000	388120000	209890000	178240000	525820000	290760000	235060000	9830	1667	9307	60662;60663;60664;60665;60666;60667;60668;60669;60670;60671;60672	81733;81734;81735;81736;81737;81738;81739;81740;81741;81742;81743	81733			11	
DVTLFEGK	1	Unmodified	907.4651	0.46509784	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.254	51.584	2	0.0025445	46595	160511_QHF_FH_JSI11i_1	87.323	18.408			2.42	2.0774	30.617	3	3	Median	2.42	2.0774	NaN	1	1	Median	1.4079	1.6763	NaN	1	1	Median	3.1384	3.0665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136110000	36108000	99999000	37339000	11216000	26123000	43688000	10570000	33118000	55080000	14322000	40758000	0	0	0	9831	2952	9308	60673;60674;60675	81744;81745;81746	81744			3	
DVTLFEGKR	1	Acetyl (K)	1105.5768	0.57677356	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		68.025	57.002	2	0.0082497	31602	160513_QHF_FH_JSI11Kac_4	76.827	44.892			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1159800	1159800	0	0	0	0	0	0	0	1159800	1159800	0	0	0	0	9832	2952	9309	60676	81747	81747	2723		1	
DVTLHQALLR	0	Unmodified	1164.6615	0.66150624	4875	Q9HD47	RANGRF	Ran guanine nucleotide release factor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.357	46.959	2	0.0035419	40159	160511_QHF_FH_JSI12i_2	58.981	46.453			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9833	4875	9310	60677	81748	81748			1	
DVTLLKETER	1	Acetyl (K)	1244.6612	0.66123147	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		67.558	57.969	2	2.6417E-05	29708	160513_QHF_FH_JSI11Kac_3	105.4	54.79			0.1346	0.14462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1346	0.14462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	742490	685920	56568	0	0	0	0	0	0	742490	685920	56568	0	0	0	9834	1298	9311	60678	81749	81749	1232		1	
DVTLQKQCVPFR	1	Acetyl (K)	1531.7817	0.78169773	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		74.187	63.345	2	0.0056465	34329	160513_QHF_FH_JSI11Kac_4	65.305	50.039			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	823630	823630	0	0	0	0	0	0	0	823630	823630	0	0	0	0	9835	1143	9312	60679	81750	81750	997		1	
DVTLSKPSFAR	1	Acetyl (K)	1261.6667	0.6666512	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	72.668	62.506	2	0.00036494	33464	160513_QHF_FH_JSI12Kac_4	91.584	43.301			0.30123	0.31997	176.05	4	2	Median	NaN	NaN	NaN	0	0	Median	0.087239	0.098249	NaN	1	1	Median	1.0401	1.042	NaN	1	0	Median	0.34312	0.37815	254.6	2	1	Median	7003800	4567900	2436000	0	0	0	1357000	1264000	92956	3748000	2026600	1721400	1898800	1277300	621560	9836	5466	9313	60680;60681;60682;60683	81751;81752;81753;81754	81754	3436		3	
DVTNFTVGGFAPMSPR	0	Unmodified	1694.8086	0.80864076	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	4									2		2		85.86	85.263	2	3.7976E-05	77562	160511_QHF_FH_JSI11i_1	109.6	85.749			1.3165	1.1647	89.041	4	3	Median	0.69822	0.5698	124.99	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3508	1.2908	38.422	2	2	Median	NaN	NaN	NaN	0	0	Median	81935000	39737000	42198000	28828000	16886000	11943000	0	0	0	53106000	22851000	30255000	0	0	0	9837	116	9314	60684;60685;60686;60687	81755;81756;81757;81758	81755			3	
DVTNNQEK	1	Unmodified	946.43559	0.43558863	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	5.3063	5.042	2	0.00070313	2848	160511_QHF_FH_JSI12i_1	122.74	68.774			1.3548	0.84085	29.246	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85423	0.83354	NaN	1	0	Median	1.3555	1.3833	0.56498	2	1	Median	215980000	109680000	106300000	0	0	0	0	0	0	99784000	53333000	46451000	116200000	56351000	59849000	9838	5523	9315	60688;60689;60690	81759;81760	81760			2	
DVTNNVHYENYR	0	Unmodified	1522.6801	0.68006943	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	29.51	28.598	2;3	1.4013E-22	24222	160511_QHF_FH_JSI11i_2	162.26	154.04			0.93876	0.88808	17.339	8	0	Median	0.9763	0.84059	0.72483	2	0	Median	0.722	0.88808	1.1602	2	0	Median	1.1824	1.181	8.9748	2	0	Median	0.75921	0.85051	21.773	2	0	Median	890470000	480470000	410000000	144650000	72506000	72149000	156670000	89577000	67096000	329760000	176470000	153290000	259380000	141930000	117460000	9839	2725	9316	60691;60692;60693;60694;60695;60696;60697;60698;60699	81761;81762;81763;81764;81765;81766;81767;81768;81769;81770;81771;81772	81768			11	
DVTPPPETEVVLIK	1	Unmodified	1535.8447	0.84467514	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	75.177	74.686	2;3	0.00013101	68147	160511_QHF_FH_JSI12i_1	99.522	79.736			0.99788	1.0014	7.5885	8	0	Median	1.2766	1.0539	10.03	2	0	Median	0.85833	1.0114	12.242	2	0	Median	1.0022	0.97837	6.1097	2	0	Median	0.97602	1.0323	7.4195	2	0	Median	1164100000	564520000	599610000	264820000	102310000	162500000	322310000	170190000	152130000	304970000	159470000	145500000	272020000	132550000	139470000	9840	1298	9317	60700;60701;60702;60703;60704;60705;60706;60707	81773;81774;81775;81776;81777;81778;81779;81780;81781;81782;81783;81784;81785;81786;81787;81788;81789;81790;81791;81792	81780			20	
DVTTFFSGK	1	Unmodified	1000.4866	0.48656157	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	66.852	64.192	2	0.0012901	58679	160511_QHF_FH_JSI11i_1	78.149	32.133			0.84535	0.88268	54.38	5	3	Median	1.1801	0.96991	NaN	1	0	Median	0.55281	0.63045	NaN	1	1	Median	1.1561	1.1279	97.614	2	2	Median	0.84535	0.88268	NaN	1	0	Median	186820000	87918000	98904000	54384000	23710000	30674000	35158000	20321000	14838000	56163000	23810000	32353000	41117000	20079000	21039000	9841	3561	9318	60708;60709;60710;60711;60712	81793;81794;81795;81796	81793			4	
DVTVLSVAEEQDLLK	1	Unmodified	1657.8774	0.87743183	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			94.382	94.39	2;3	0.00041179	85604	160511_QHF_FH_JSI10i_1	73.022	59.822			0.25983	0.28395	126.23	2	2	Median	NaN	NaN	NaN	0	0	Median	0.25983	0.28395	126.23	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27068000	19786000	7282600	0	0	0	27068000	19786000	7282600	0	0	0	0	0	0	9842	2584	9319	60713;60714	81797;81798	81798			2	
DVTVPELR	0	Unmodified	927.50255	0.50254598	1211	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	50.267	49.59	2	0.0033453	44625	160511_QHF_FH_JSI10i_1	73.248	39.452			1.0706	1.006	20.721	4	1	Median	1.0465	0.88184	NaN	1	0	Median	0.76169	0.86419	NaN	1	0	Median	1.3813	1.3221	NaN	1	1	Median	1.0952	1.1477	NaN	1	0	Median	102010000	51190000	50816000	32816000	14477000	18339000	22377000	14026000	8350600	25582000	10333000	15250000	21231000	12354000	8877300	9843	1211	9320	60715;60716;60717;60718	81799;81800;81801	81800			3	
DVTVYNPELDK	1	Unmodified	1291.6296	0.62959699	5045	Q9NVR0	KLHL11	Kelch-like protein 11	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.08	50.665	2	0.0006484	45635	160511_QHF_FH_JSI10i_1	74.162	47.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9844	5045	9321	60719	81802	81802			1	
DVTYEEAK	1	Unmodified	953.43419	0.43419164	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.67	5.44	1				1	1						1	2	20.571	15.581	2	0.0056357	13846	160511_QHF_FH_JSI12i_1	73.248	40.893			0.59729	0.65157	35.005	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41115	0.39991	NaN	1	1	Median	0.66485	0.7167	13.473	2	2	Median	347830000	241940000	105890000	0	0	0	0	0	0	4955400	2340500	2614900	342880000	239600000	103280000	9845	1938	9322	60720;60721;60722	81803;81804;81805	81803			3	
DVTYLTEEK	1	Unmodified	1096.5288	0.52882031	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.018	41.674	2	0.01961	37595	160511_QHF_FH_JSI11i_1	50.473	41.56			0.80379	0.79381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80379	0.79381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92702000	59580000	33121000	0	0	0	0	0	0	92702000	59580000	33121000	0	0	0	9846	2227	9323	60723	81806	81806			1	
DVVAGLTQR	0	Unmodified	957.52434	0.52434406	244	O15085	ARHGEF11	Rho guanine nucleotide exchange factor 11	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.844	37.246	2	0.016149	33781	160511_QHF_FH_JSI12i_1	45.368	27.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9847	244	9324	60724	81807	81807			1	
DVVALIR	0	Unmodified	784.48069	0.48068833	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	3	3	3	58.106	57.327	2	0.0055543	49195	160511_QHF_FH_JSI12i_2	99.384	39.775			0.41869	0.49515	120.04	9	9	Median	1.1191	0.96041	150.67	2	2	Median	1.0625	1.2737	133.62	2	2	Median	0.36918	0.3933	154.23	3	3	Median	1.0677	1.1717	155.58	2	2	Median	250950000	124850000	126100000	43137000	20814000	22323000	49611000	16771000	32839000	91281000	52145000	39135000	66920000	35121000	31799000	9848	1785	9325	60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735	81808;81809;81810;81811;81812;81813;81814;81815;81816;81817;81818	81810			11	
DVVALIRK	1	Unmodified	912.57565	0.57565135	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		48.316	47.514	2;3	0.0027069	38984	160511_QHF_FH_JSI9i_3	103.91	35.485			3.3825	2.9292	6.5622	2	2	Median	3.405	2.7964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.3601	3.0684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100130000	21390000	78736000	47014000	5467400	41546000	0	0	0	53112000	15923000	37190000	0	0	0	9849	1785	9326	60736;60737;60738	81819;81820;81821	81821			3	
DVVDPSK	1	Unmodified	758.38103	0.38103386	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	6									2	2	2		13.196	12.648	2	0.012132	9932	160511_QHF_FH_JSI9i_1	75.109	41.371			0.72894	0.71256	69.76	4	4	Median	1.5058	1.2268	74.148	2	2	Median	0.59883	0.69917	NaN	1	1	Median	0.39227	0.38724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	873940000	456050000	417890000	450060000	199430000	250640000	247190000	151680000	95512000	176690000	104950000	71742000	0	0	0	9850	512	9327	60739;60740;60741;60742;60743;60744	81822;81823;81824;81825;81826;81827	81826			6	
DVVENGETADQTLSLMEQLR	0	Unmodified	2247.0689	0.068890786	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	95.382	95.082	3	3.061E-05	86426	160511_QHF_FH_JSI11i_1	60.561	56.292			1.4733	1.4813	9.7956	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4675	1.3821	NaN	1	0	Median	1.4791	1.5875	NaN	1	0	Median	107090000	41635000	65452000	0	0	0	0	0	0	63230000	22822000	40407000	43858000	18813000	25045000	9851	1609	9328	60745;60746	81828;81829	81828			2	
DVVENGETADQTLSLMEQLRGEALK	1	Unmodified	2745.3491	0.34908839	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By matching	2.67	0.471		1	2							1		1	1	100.82	100.8	3	1.0967E-28	88514	160511_QHF_FH_JSI9i_2	151.47	141.21			0.62497	0.63765	34.065	3	1	Plateau	1.3951	1.1905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73143	0.68795	NaN	1	0	Median	0.62497	0.63765	NaN	1	0	Median	265330000	129620000	135710000	80801000	20917000	59884000	0	0	0	74734000	39753000	34981000	109790000	68949000	40844000	9852	1609	9329	60747;60748;60749	81830;81831	81831			2	
DVVEPLLRPQWYVR	0	Unmodified	1768.9624	0.96243929	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							3	2	3	1	86.002	85.403	3	5.1358E-05	76047	160511_QHF_FH_JSI11i_3	102.66	89.543			1.0049	1.0438	13.285	8	3	Median	1.2329	1.0178	18.477	3	1	Median	0.89906	1.1022	2.8402	2	0	Median	0.93571	0.90018	9.6541	2	1	Median	1.0565	1.0705	NaN	1	1	Median	466000000	209920000	256090000	157940000	63465000	94475000	151880000	67372000	84508000	121570000	64144000	57423000	34618000	14935000	19682000	9853	1283	9330	60750;60751;60752;60753;60754;60755;60756;60757;60758	81832;81833;81834;81835;81836;81837;81838;81839;81840;81841;81842;81843;81844;81845	81833			14	
DVVEQMEK	1	Unmodified	976.45355	0.45354688	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	7									3	1	1	2	29.492	28.709	2	0.0018537	25234	160511_QHF_FH_JSI11i_1	84.498	44.835			0.68814	0.73267	69.596	7	3	Median	0.62164	0.53183	74.972	3	2	Median	1.4482	1.7357	NaN	1	0	Median	2.6839	2.5665	NaN	1	0	Median	0.60333	0.64412	18.216	2	1	Median	691200000	305750000	385450000	243130000	117040000	126080000	128210000	41101000	87111000	152640000	48545000	104090000	167230000	99061000	68165000	9854	3328	9331	60759;60760;60761;60762;60763;60764;60765	81846;81847;81848;81849	81846			4	
DVVFNYLHATAFQGTPLAQAVEGPSENVRK	1	Unmodified	3257.6469	0.64692539	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	2	4	3	1	95.319	91.083	3;4	3.5704E-142	47096	160513_QHF_FH_JSI10Kac_6	252.28	236.39			0.98503	1.0519	19.956	10	4	Median	1.3264	1.1172	9.5703	2	1	Median	0.89957	1.1235	6.8784	4	2	Linear	1.1154	1.0597	36.804	3	1	Median	0.99469	1.0799	NaN	1	0	Median	1369000000	749390000	619600000	205640000	101320000	104320000	453790000	243980000	209810000	650170000	375020000	275150000	59379000	29068000	30311000	9855	1379	9332	60766;60767;60768;60769;60770;60771;60772;60773;60774;60775	81850;81851;81852;81853;81854;81855;81856;81857;81858;81859;81860;81861;81862;81863	81863			14	
DVVICPDASLEDAK	1	Unmodified	1530.7236	0.72357373	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	4.67	5.19	2				1							2	1	65.982	61.063	2	1.1282E-12	55286	160511_QHF_FH_JSI11i_1	117.98	93.684			0.55784	0.58121	17.914	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51858	0.51206	NaN	1	1	Median	0.60007	0.65971	NaN	1	0	Median	94982000	50715000	44268000	0	0	0	0	0	0	93048000	49517000	43531000	1934400	1197300	737060	9856	4276	9333	60776;60777;60778	81864;81865;81866	81865			3	
DVVICPDASLEDAKK	2	Unmodified	1658.8185	0.81853675	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				1	3	3	3	55.063	52.739	2;3	1.2115E-10	46648	160511_QHF_FH_JSI9i_1	128.9	124.5			1.1757	1.1311	73.151	10	7	Median	1.0665	0.88381	NaN	1	0	Median	0.75435	0.89647	90.359	3	3	Plateau	0.56787	0.55824	67.29	3	2	Median	1.4388	1.564	81.708	3	2	Median	3382700000	1962800000	1419900000	363490000	193410000	170080000	895770000	540590000	355180000	1252200000	809390000	442810000	871250000	419370000	451880000	9857	4276	9334	60779;60780;60781;60782;60783;60784;60785;60786;60787;60788	81867;81868;81869;81870;81871;81872;81873;81874;81875;81876;81877	81874			11	
DVVILGR	0	Unmodified	770.46504	0.46503826	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	45.303	44.718	2	0.011479	40680	160511_QHF_FH_JSI12i_1	77.496	34.449			0.87012	0.83489	81.491	6	6	Median	2.4353	1.992	NaN	1	1	Median	0.96414	1.1093	117.42	2	2	Median	0.87012	0.83489	60.911	2	2	Median	0.3446	0.35915	NaN	1	1	Median	166800000	78670000	88130000	15214000	4795600	10418000	58795000	26448000	32347000	63513000	29000000	34513000	29278000	18426000	10852000	9858	421	9335	60789;60790;60791;60792;60793;60794;60795	81878;81879;81880;81881;81882;81883;81884	81880			7	
DVVMEPTMK	1	Unmodified	1048.4933	0.4933032	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	42.327	41.633	2	7.9941E-05	37907	160511_QHF_FH_JSI12i_1	95.502	85.034			0.80808	0.86228	68.762	6	5	Median	1.0831	0.88227	110.74	2	2	Median	0.79342	0.9304	NaN	1	1	Median	1.4731	1.444	83.666	2	2	Median	0.68571	0.69577	NaN	1	0	Median	643770000	313510000	330260000	111370000	52848000	58518000	157560000	80079000	77483000	259170000	117160000	142010000	115670000	63419000	52254000	9859	4623	9336	60796;60797;60798;60799;60800;60801;60802	81885;81886;81887;81888;81889;81890;81891;81892	81888			8	
DVVMMENFHHIFATLSR	0	Unmodified	2045.9815	0.98153652	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	89.584	81.266	3	0.00024958	43482	160513_QHF_FH_JSI12Kac_6	89.982	70.69			1.2314	1.2983	152.92	4	4	Median	7.7838	6.6423	NaN	1	1	Median	0.19828	0.2308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2314	1.2983	117.04	2	2	Median	201410000	99741000	101670000	50897000	6524900	44372000	80902000	67976000	12926000	0	0	0	69610000	25240000	44370000	9860	5024	9337	60803;60804;60805;60806	81893;81894;81895;81896	81895			4	
DVVNVYEPQLQHHVAQK	1	Unmodified	2003.0225	0.022473362	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	46.514	45.451	3	1.6254E-07	39010	160511_QHF_FH_JSI12i_2	119.56	103.43			0.96982	0.91019	26.316	5	5	Median	1.038	0.91019	NaN	1	1	Median	0.96982	1.1731	NaN	1	1	Median	0.80582	0.83599	NaN	1	1	Median	1.0582	1.2014	39.508	2	2	Median	268750000	134640000	134110000	17651000	5123600	12527000	55639000	25227000	30412000	91894000	49703000	42191000	103560000	54583000	48980000	9861	2728	9338	60807;60808;60809;60810;60811	81897;81898;81899;81900;81901;81902	81899			6	
DVVQAYPEVR	0	Unmodified	1174.5982	0.59823728	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	44.631	41.065	2	2.02E-11	37176	160511_QHF_FH_JSI11i_1	152.28	120.34			0.92741	0.96542	13.853	6	0	Median	1.0194	0.84179	NaN	1	0	Median	0.81923	0.96542	3.2307	2	0	Median	1.1519	1.1193	8.132	2	0	Median	0.79263	0.8222	NaN	1	0	Median	1932400000	1003000000	929330000	320320000	153200000	167110000	480200000	271260000	208950000	640830000	313610000	327220000	491030000	264980000	226050000	9862	2265	9339	60812;60813;60814;60815;60816;60817	81903;81904;81905;81906;81907;81908;81909;81910;81911;81912;81913	81904			11	
DVVTAAGDMLK	1	Unmodified	1118.5642	0.56415996	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	2	2	67.612	65.446	2	8.0088E-08	59357	160511_QHF_FH_JSI10i_1	125.48	91.391			0.90016	0.83549	24.055	5	0	Median	0.90016	0.7101	NaN	1	0	Median	0.71631	0.83549	NaN	1	0	Median	0.76794	0.74661	NaN	1	0	Median	1.0893	1.1646	4.5418	2	0	Median	4407500000	2308000000	2099500000	1076900000	528770000	548150000	1026600000	545630000	481000000	1235400000	694240000	541150000	1068600000	539360000	529230000	9863	873	9340	60818;60819;60820;60821;60822;60823	81914;81915;81916;81917;81918;81919;81920;81921;81922;81923;81924;81925;81926;81927;81928;81929;81930	81923			17	
DVVTAAGDMLK	1	Oxidation (M)	1134.5591	0.55907458	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	1	0			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	51.793	42.376	2	0.0014041	23398	160513_QHF_FH_JSI11Kac_3	84.213	75.35			1.5281	1.587	34.797	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2931	1.2408	NaN	1	1	Median	1.8057	2.0297	NaN	1	1	Median	5762500	2462500	3300100	0	0	0	0	0	0	4804900	2058400	2746500	957620	404060	553560	9864	873	9340	60824;60825	81931;81932	81931		417	2	
DVVVELK	1	Unmodified	800.46437	0.46436956	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	44.063	43.399	2	0.011599	38811	160511_QHF_FH_JSI10i_1	77.058	36.955			1.0245	0.84933	73.528	8	8	Median	1.0245	0.83865	52.652	2	2	Median	0.72245	0.84456	118.26	2	2	Median	1.0314	1.01	102.11	2	2	Median	1.1412	1.1662	95.701	2	2	Median	795120000	387600000	407520000	94049000	49410000	44639000	240530000	131170000	109350000	213650000	99188000	114460000	246900000	107830000	139070000	9865	5558	9341	60826;60827;60828;60829;60830;60831;60832;60833	81933;81934;81935;81936;81937;81938;81939;81940;81941	81938			9	
DVVVQHVHFDGLGR	0	Unmodified	1576.811	0.81102402	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.182	55.934	2	6.874E-10	49547	160511_QHF_FH_JSI11i_3	107.85	83.465			1.5373	1.6172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5373	1.6172	NaN	1	1	Median	18227000	7068200	11158000	0	0	0	0	0	0	0	0	0	18227000	7068200	11158000	9866	5645	9342	60834;60835	81942;81943	81942			2	
DVWGIEGPIDAAFTR	0	Unmodified	1645.81	0.81002097	76	CON__Q3ZBS7;P04004	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	yes	no	0	0	0	0		By MS/MS			1	0	1										1			101.28	101.25	2	0.00021359	91988	160511_QHF_FH_JSI10i_1	104.24	86.108		+	0.63323	0.73672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63323	0.73672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39507000	25818000	13690000	0	0	0	39507000	25818000	13690000	0	0	0	0	0	0	9867	76	9343	60836	81944	81944			1	
DVWSINRPR	0	Unmodified	1141.5992	0.59924033	5821				yes	yes	0	0	0	1	By MS/MS		By MS/MS		16	0									2	1		1		51.073	41.597	3	0.052098	22649	160513_QHF_FH_JSI11Kac_6	31.422	13.363	+		96.849	87.215	32.723	2	2	Median	81.526	69.2	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115.05	109.92	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72892000	807390	72085000	43293000	440960	42852000	0	0	0	29599000	366430	29233000	0	0	0	9868	5821	9344	60837;60838	81945;81946	81945			2	
DVWSNEAVK	1	Unmodified	1046.5033	0.50327426	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				37.833	36.61	2	0.01301	32272	160511_QHF_FH_JSI9i_1	56.81	24.773			1.5933	1.3159	NaN	1	1	Median	1.5933	1.3159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53895000	24249000	29646000	53895000	24249000	29646000	0	0	0	0	0	0	0	0	0	9869	618	9345	60839	81947	81947			1	
DVYDDGK	1	Unmodified	810.33956	0.33956298	2669;1755	Q15418;P51812;Q15349	RPS6KA1;RPS6KA3;RPS6KA2	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2	no	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.63	10.044	2	0.034446	7998	160511_QHF_FH_JSI12i_1	50.127	32.36			1.0902	1.0093	1.5574	2	0	Median	1.2499	1.0204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95092	0.99821	NaN	1	0	Median	283440000	131250000	152190000	126670000	54910000	71762000	0	0	0	0	0	0	156760000	76337000	80427000	9870	2669;1755	9346	60840;60841	81948;81949;81950	81949			3	
DVYEEFDEK	1	Unmodified	1172.4873	0.48734943	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		45.674	44.857	2	0.0002709	40288	160511_QHF_FH_JSI10i_1	96.331	79.091			0.9448	0.85373	137.17	4	4	Median	0.73874	0.62063	143.8	2	2	Median	3.9548	4.7167	NaN	1	1	Median	0.44386	0.42483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	161270000	77534000	83736000	54713000	29748000	24965000	54898000	17138000	37760000	51659000	30648000	21011000	0	0	0	9871	940	9347	60842;60843;60844;60845	81951;81952;81953;81954	81952			4	
DVYEELLTQAEIQGNINK	1	Unmodified	2076.0375	0.037514303	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	96.26	96.054	2;3	6.3717E-17	86976	160511_QHF_FH_JSI10i_1	200.44	185.41			0.93698	0.83889	19.696	7	3	Median	1.0292	0.83889	NaN	1	1	Median	0.61098	0.72022	9.8712	2	1	Median	0.85981	0.82183	37.105	2	1	Median	0.95717	0.96388	0.70322	2	0	Median	223820000	113680000	110140000	14567000	7515700	7051800	74638000	46664000	27974000	63525000	27251000	36274000	71094000	32253000	38840000	9872	1600	9348	60846;60847;60848;60849;60850;60851;60852;60853	81955;81956;81957;81958;81959;81960;81961;81962;81963;81964;81965;81966	81964			12	
DVYGGAHQTLGLSGNLIASSFGK	1	Unmodified	2291.1546	0.15460975	5029	Q9NVE7	PANK4	Pantothenate kinase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	87.908	87.852	3	0.014134	76275	160511_QHF_FH_JSI12i_3	32.04	18.208			1.1189	1.0937	37.173	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9084	0.84088	NaN	1	1	Median	1.3781	1.4225	NaN	1	1	Median	29419000	15637000	13782000	0	0	0	0	0	0	14491000	7999200	6491400	14928000	7638100	7290100	9873	5029	9349	60854;60855	81967;81968	81968			2	
DVYHHTFFEMLGSWSFGDYFK	1	Unmodified	2612.1471	0.14708153	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			97.006	89.593	3;4	1.6226E-28	52927	160513_QHF_FH_JSI10Kac_6	149.36	146.03			0.84933	0.85546	16.184	4	0	Median	1.1023	0.94677	0.7966	2	0	Median	0.60943	0.72719	9.4287	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1294600000	786160000	508430000	464300000	243550000	220750000	830290000	542610000	287680000	0	0	0	0	0	0	9874	1664	9350	60856;60857;60858;60859	81969;81970;81971;81972;81973;81974;81975	81974			7	
DVYIVQDLMETDLYK	1	Unmodified	1843.8914	0.89136734	1309;1289	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	0	0	By MS/MS				1	0	1									1				102.04	101.86	2	4.2235E-53	90085	160511_QHF_FH_JSI9i_1	225.13	203.08			1.2617	1.0367	NaN	1	0	Median	1.2617	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109300000	45592000	63710000	109300000	45592000	63710000	0	0	0	0	0	0	0	0	0	9875	1289;1309	9351	60860	81976	81976			1	
DVYLSPR	0	Unmodified	848.43922	0.43921744	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.87	5						2			1	1	4	1	33.459	30.289	2	0.0056655	27390	160511_QHF_FH_JSI10i_1	94.006	31.028			0.7529	0.79531	52.502	7	5	Median	0.75141	0.60857	NaN	1	1	Median	1.1946	1.437	NaN	1	0	Median	1.0071	1.003	63.242	4	4	Median	0.7529	0.79531	NaN	1	0	Median	1425500000	731040000	694420000	229620000	123680000	105940000	291750000	156450000	135300000	579330000	274040000	305290000	324770000	176870000	147900000	9876	1474	9352	60861;60862;60863;60864;60865;60866;60867	81977;81978;81979;81980;81981;81982;81983	81980			7	
DVYNHFLLYYGR	0	Unmodified	1558.7569	0.75686319	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	78.084	69.72	2;3	4.6649E-26	38783	160513_QHF_FH_JSI10Kac_6	175.15	140.77			0.94328	1.0055	23.305	8	0	Median	0.87022	0.73912	1.8208	2	0	Median	0.79992	0.9478	0.72435	2	0	Median	1.4072	1.3391	8.318	2	0	Median	1.0288	1.0842	3.0294	2	0	Median	1896900000	1016200000	880760000	534230000	324980000	209250000	588330000	317000000	271330000	460270000	181880000	278400000	314090000	192300000	121790000	9877	3212	9353	60868;60869;60870;60871;60872;60873;60874;60875	81984;81985;81986;81987;81988;81989;81990;81991;81992;81993;81994;81995;81996;81997	81997			14	
DVYPEPPR	0	Unmodified	971.47125	0.47124585	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	30.16	29.931	2	0.021774	27293	160511_QHF_FH_JSI12i_1	45.081	26.299			0.94236	0.91978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94236	0.91978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123070000	75678000	47396000	0	0	0	0	0	0	123070000	75678000	47396000	0	0	0	9878	750	9354	60876;60877	81998;81999	81999			2	
DVYTGDALR	0	Unmodified	1008.4876	0.4876242	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		33.824	33.212	2	5.0724E-06	29778	160511_QHF_FH_JSI11i_1	117.04	37.439			1.2607	1.22	4.6697	3	0	Median	1.4078	1.1521	NaN	1	0	Median	1.0679	1.2637	NaN	1	0	Median	1.2607	1.22	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1470100000	723980000	746110000	449090000	222650000	226450000	492720000	230700000	262020000	528280000	270630000	257640000	0	0	0	9879	1177	9355	60878;60879;60880	82000;82001;82002;82003;82004	82001			5	
DVYVPNTTYR	0	Unmodified	1226.5932	0.5931519	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.767	43.103	2	0.0013003	38984	160511_QHF_FH_JSI11i_1	77.677	66.526			1.0784	1.11	17.77	4	4	Median	1.6685	1.3382	NaN	1	1	Median	0.83362	0.98454	NaN	1	1	Median	1.2855	1.2515	NaN	1	1	Median	0.90468	0.9307	NaN	1	1	Median	189360000	92219000	97141000	38867000	15600000	23267000	46011000	22657000	23354000	52528000	25230000	27299000	51954000	28732000	23221000	9880	4181	9356	60881;60882;60883;60884	82005;82006;82007;82008	82005			4	
DVYVQLYLQHLTAR	0	Unmodified	1717.9152	0.91515474	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.37	6.99		9							10	5	5	5	4	85.944	81.21	2;3	4.4017E-154	41400	160513_QHF_FH_JSI9Kac_6	300.53	265.84			0.76288	0.82053	49.746	18	8	Median	0.79753	0.67875	55.502	4	2	Median	0.91693	1.09	57.381	5	3	Median	0.96002	0.91756	52.928	5	2	Median	0.64265	0.71507	20.376	4	1	Median	7991100000	3978800000	4012300000	1649600000	866020000	783580000	4090700000	1840000000	2250700000	1056900000	504780000	552090000	1193900000	767980000	425950000	9881	1526;1527	9357	60885;60886;60887;60888;60889;60890;60891;60892;60893;60894;60895;60896;60897;60898;60899;60900;60901;60902;60903	82009;82010;82011;82012;82013;82014;82015;82016;82017;82018;82019;82020;82021;82022;82023;82024;82025;82026;82027;82028;82029;82030;82031;82032;82033;82034;82035;82036;82037	82028			29	
DWAFINTNIFAR	0	Unmodified	1466.7306	0.73064844	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0				By MS/MS	16	0									2				2	93.732	84.29	2	3.1414E-35	45656	160513_QHF_FH_JSI12Kac_6	183.67	155.47			0.86955	0.90876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86955	0.90876	NaN	1	1	Median	33275000	18041000	15235000	0	0	0	0	0	0	0	0	0	33275000	18041000	15235000	9882	4984	9358	60904;60905	82038;82039	82039			2	
DWDELEEEAR	0	Unmodified	1290.5364	0.53642488	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	58.777	58.253	2	0.00066472	52730	160511_QHF_FH_JSI10i_1	85.377	66.106			1.1682	1.2865	68.974	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6744	0.78993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0237	2.0951	NaN	1	1	Median	84519000	32653000	51865000	0	0	0	37974000	18705000	19269000	0	0	0	46544000	13948000	32596000	9883	5658	9359	60906;60907	82040;82041	82041			2	
DWEMHVHFK	1	Unmodified	1227.5495	0.54951295	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.64			3						17	4	6	4	6	59.87	52.146	2;3;4	2.5994E-05	27241	160513_QHF_FH_JSI12Kac_6	94.692	91.573			1.0929	1.1273	35.877	19	5	Median	0.92354	0.79524	23.043	3	1	Median	0.76236	0.90648	20.66	6	1	Median	1.7268	1.6703	26.138	4	1	Median	1.2942	1.3754	28.427	6	2	Median	383060000	182350000	200710000	51155000	25559000	25596000	132400000	68903000	63493000	83404000	38199000	45205000	116110000	49692000	66414000	9884	2326	9360	60908;60909;60910;60911;60912;60913;60914;60915;60916;60917;60918;60919;60920;60921;60922;60923;60924;60925;60926;60927	82042;82043;82044;82045;82046;82047;82048;82049;82050;82051;82052;82053;82054;82055;82056;82057;82058;82059;82060;82061;82062	82051			17	
DWENASTTSSVASGTEYTGPK	1	Unmodified	2186.9604	0.96038619	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.705	53.04	2	1.2499E-05	48206	160511_QHF_FH_JSI12i_1	73.156	67.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9885	2278	9361	60928	82063	82063			1	
DWFLENK	1	Unmodified	950.44978	0.44978213	3096	Q6P1Q9;Q96IZ6	METTL2B;METTL2A	Methyltransferase-like protein 2B;Methyltransferase-like protein 2A	yes	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		61.63	60.895	2	0.025567	52920	160511_QHF_FH_JSI11i_2	57.281	29.756			6.5908	6.1901	33.217	2	2	Median	8.8329	7.8289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.9178	4.8943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47922000	10625000	37296000	15984000	3470000	12514000	0	0	0	31938000	7155500	24782000	0	0	0	9886	3096	9362	60929;60930	82064;82065	82065			2	
DWFRDEMQK	1	Unmodified	1253.5499	0.54990688	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	49.33	49.211	2	1.3472E-05	42198	160511_QHF_FH_JSI12i_3	128.86	128.86			0.88758	0.87414	12.021	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82951	0.8029	NaN	1	0	Median	0.94972	0.95169	NaN	1	0	Median	155580000	66909000	88669000	0	0	0	0	0	0	64234000	28273000	35961000	91344000	38636000	52708000	9887	454	9363	60931;60932	82066;82067	82067			2	
DWGPALLEHR	0	Unmodified	1192.5989	0.59890598	1614	P48067	SLC6A9	Sodium- and chloride-dependent glycine transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	61.179	60.681	3	0.00018537	53961	160511_QHF_FH_JSI11i_3	69.786	64.566			0.92909	0.88117	29.277	4	2	Median	NaN	NaN	NaN	0	0	Median	0.89381	1.0882	43.418	2	2	Median	0.83845	0.78964	NaN	1	0	Median	1.0295	0.96992	NaN	1	0	Median	91270000	41668000	49602000	0	0	0	23167000	11737000	11430000	35830000	14658000	21172000	32272000	15273000	17000000	9888	1614	9364	60933;60934;60935;60936;60937;60938;60939	82068;82069;82070;82071;82072;82073;82074;82075;82076	82069			9	
DWGVALVTLHGR	0	Unmodified	1322.7095	0.70951906	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	74.75	74.177	3	0.0090369	64403	160511_QHF_FH_JSI12i_3	57.802	47.848			0.85267	0.82299	33.89	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2919	1.5164	NaN	1	0	Median	0.94932	0.86667	NaN	1	0	Median	0.80606	0.82299	NaN	1	0	Median	94945000	51294000	43651000	0	0	0	9288800	4834900	4453900	39214000	19822000	19392000	46442000	26638000	19804000	9889	4083	9365	60940;60941;60942	82077;82078;82079	82079			0	
DWHRPCLK	1	Unmodified	1110.5393	0.53928261	1700	P50238	CRIP1	Cysteine-rich protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		25.472	25.016	3	0.028369	20506	160511_QHF_FH_JSI11i_3	27.882	21.223			1.1368	1.1961	18.886	3	1	Plateau	1.1368	0.94759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2741	1.1961	18.756	2	0	Median	NaN	NaN	NaN	0	0	Median	215820000	86423000	129400000	19465000	9158800	10307000	0	0	0	196360000	77264000	119090000	0	0	0	9890	1700	9366	60943;60944;60945	82080;82081;82082	82080			3	
DWIKFAQK	2	Acetyl (K)	1076.5655	0.56548059	388	O43852	CALU	Calumenin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.128	65.463	2	0.00054739	34837	160513_QHF_FH_JSI11Kac_5	126.67	101.77			0.29173	0.29261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29173	0.29261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8379900	7914100	465740	0	0	0	0	0	0	8379900	7914100	465740	0	0	0	9891	388	9367	60946	82083	82083	203		1	
DWILPSDYDHAEAEAR	0	Unmodified	1886.8435	0.84350594	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.52	0.499	10	11								6	6	5	4	68.433	67.703	2;3	2.9552E-06	61412	160511_QHF_FH_JSI11i_1	119.56	100.96			1.1063	1.1285	20.523	18	5	Median	1.4176	1.2095	16.249	5	0	Median	0.89213	1.0487	25.643	5	4	Median	1.2108	1.2259	29.418	4	1	Median	1.0423	1.1306	5.539	4	0	Median	1651500000	803060000	848490000	308640000	136360000	172280000	507700000	262180000	245510000	437800000	211680000	226120000	397410000	192830000	204590000	9892	388	9368	60947;60948;60949;60950;60951;60952;60953;60954;60955;60956;60957;60958;60959;60960;60961;60962;60963;60964;60965;60966;60967	82084;82085;82086;82087;82088;82089;82090;82091;82092;82093;82094;82095;82096;82097;82098;82099;82100;82101;82102;82103;82104;82105;82106;82107;82108;82109;82110	82085			26	
DWLFAPHYR	0	Unmodified	1203.5825	0.58252764	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.15		10	9						4	4	8	6	5	69.936	67.125	2;3	1.3446E-06	59765	160511_QHF_FH_JSI11i_3	113.26	97.995			1.0422	1.0742	36.255	16	5	Median	2.1035	1.734	57.134	3	1	Plateau	1.0921	1.2663	29.892	6	3	Median	1.1128	1.0476	4.2359	4	1	Median	0.8128	0.88097	26.089	3	0	Median	714370000	368450000	345920000	52120000	17511000	34610000	177810000	92764000	85047000	239000000	117490000	121510000	245440000	140680000	104760000	9893	2598	9369	60968;60969;60970;60971;60972;60973;60974;60975;60976;60977;60978;60979;60980;60981;60982;60983;60984;60985;60986;60987;60988;60989;60990	82111;82112;82113;82114;82115;82116;82117;82118;82119;82120;82121;82122;82123;82124;82125;82126;82127;82128;82129;82130;82131;82132;82133;82134;82135;82136;82137;82138;82139;82140;82141;82142;82143;82144;82145;82146;82147	82112			37	
DWLQEQMSASSSR	0	Unmodified	1523.6675	0.66745583	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	54.382	53.977	2	5.4833E-05	48880	160511_QHF_FH_JSI12i_1	76.533	60.643			0.78231	0.80645	23.857	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86168	0.95465	NaN	1	1	Median	0.71025	0.68126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48902000	31013000	17889000	0	0	0	19312000	10883000	8429100	29590000	20131000	9459700	0	0	0	9894	950	9370	60991;60992;60993	82148;82149;82150	82149			3	
DWLTKMSGK	2	Acetyl (K)	1106.543	0.54303059	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			1	2		76.127	65.461	2	0.0089291	35203	160513_QHF_FH_JSI11Kac_4	63.216	56.481			0.2977	0.2895	153.81	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0458	1.2287	NaN	1	0	Median	0.13306	0.12821	115.18	2	1	Median	NaN	NaN	NaN	0	0	Median	18308000	13544000	4764400	0	0	0	6009900	3147100	2862800	12299000	10397000	1901700	0	0	0	9895	2094	9371	60994;60995;60996	82151;82152;82153;82154;82155	82154	2185;2186		5	
DWNDMER	0	Unmodified	964.37088	0.37087988	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.841	29.245	2	0.0026138	26206	160511_QHF_FH_JSI12i_1	109.86	96.087			1.236	1.2165	76.318	4	1	Median	1.4561	1.2039	NaN	1	0	Median	1.0492	1.2294	NaN	1	0	Median	4.6318	4.5357	NaN	1	1	Median	0.75705	0.77551	NaN	1	0	Median	563520000	225540000	337970000	99296000	30804000	68492000	194840000	96322000	98519000	95506000	15275000	80231000	173870000	83142000	90730000	9896	1524;1941	9372	60997;60998;60999;61000	82156;82157;82158;82159;82160	82158			5	
DWNIPFK	1	Unmodified	918.45995	0.45995289	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	73.982	73.371	2	0.0082581	64663	160511_QHF_FH_JSI9i_2	89.673	60.1			0.84818	0.89851	23.453	8	2	Median	1.0373	0.87891	NaN	1	0	Median	0.81777	0.97349	8.2163	2	0	Median	0.97588	0.96102	40.71	3	2	Median	0.80314	0.86048	2.5561	2	0	Median	307140000	173810000	133330000	21933000	12450000	9482800	66440000	39172000	27268000	148780000	82352000	66429000	69987000	39834000	30152000	9897	4547	9373	61001;61002;61003;61004;61005;61006;61007;61008	82161;82162;82163;82164;82165;82166;82167;82168;82169;82170;82171;82172;82173;82174;82175	82170			15	
DWNTLIVGK	1	Unmodified	1044.5604	0.56039521	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.37	6						4			1	3	3	3	72.812	68.286	2	1.9574E-08	61670	160511_QHF_FH_JSI9i_1	151.04	130.48			0.94595	0.99227	76.297	10	6	Median	0.75903	0.62229	NaN	1	0	Median	0.66001	0.77959	90.545	3	3	Plateau	1.1442	1.1207	113.9	3	1	Median	0.87966	0.91226	43.507	3	2	Median	939890000	537730000	402170000	138490000	71019000	67476000	326060000	178840000	147220000	296740000	187440000	109300000	178610000	100430000	78180000	9898	197	9374	61009;61010;61011;61012;61013;61014;61015;61016;61017;61018	82176;82177;82178;82179;82180;82181;82182;82183;82184;82185;82186;82187;82188;82189;82190	82187			15	
DWNVDLIPK	1	Unmodified	1098.571	0.5709599	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.955	80.485	2	5.5641E-05	73155	160511_QHF_FH_JSI11i_1	97.635	81.095			0.94473	0.82303	30.315	4	1	Linear	1.9995	1.6328	NaN	1	1	Median	0.93227	1.0991	NaN	1	0	Median	0.81477	0.79155	NaN	1	0	Median	0.95736	0.9864	NaN	1	0	Median	279940000	134840000	145110000	67814000	30956000	36858000	58560000	29586000	28974000	82326000	42017000	40309000	71244000	32281000	38964000	9899	1702;1368	9375	61019;61020;61021;61022	82191;82192;82193;82194;82195;82196	82191			6	
DWQEGGYTINDKPNPR	1	Unmodified	1888.8704	0.8703894	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	44.976	44.288	3	6.8034E-06	38274	160511_QHF_FH_JSI11i_2	85.734	76.637			0.84598	0.95257	20.107	4	3	Median	0.77878	0.69615	NaN	1	1	Median	0.87993	1.0639	NaN	1	1	Median	1.0375	1.0554	NaN	1	0	Median	0.81333	0.85976	NaN	1	1	Median	232230000	120680000	111550000	48187000	25603000	22583000	62904000	29970000	32934000	62779000	27375000	35404000	58362000	37730000	20632000	9900	418	9376	61023;61024;61025;61026;61027;61028	82197;82198;82199;82200;82201;82202;82203	82201			7	
DWQPHISPAGTEPAYIEYK	1	Unmodified	2201.0429	0.042934032	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.54	72.265	3	0.0035558	62363	160511_QHF_FH_JSI12i_2	46.362	37.43			8.9055	9.9766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.9055	9.9766	NaN	1	1	Median	109140000	15641000	93496000	0	0	0	0	0	0	0	0	0	109140000	15641000	93496000	9901	5202	9377	61029	82204	82204			1	
DWRPAITIK	1	Unmodified	1098.6186	0.61857879	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		4	8						4	4	4	4	4	59.262	56.325	2;3	0.00027235	47211	160511_QHF_FH_JSI10i_3	68.893	60.968			0.94706	0.95126	14.579	16	0	Median	1.145	0.91512	19.668	4	0	Median	0.81017	0.92277	13.109	4	0	Median	1.0506	0.99025	5.1098	4	0	Median	0.74854	0.81277	13.839	4	0	Median	12182000000	6115800000	6066400000	2784500000	1209800000	1574800000	3198000000	1643500000	1554500000	3584500000	1751800000	1832700000	2615200000	1510800000	1104400000	9902	2063	9378	61030;61031;61032;61033;61034;61035;61036;61037;61038;61039;61040;61041;61042;61043;61044;61045	82205;82206;82207;82208;82209;82210;82211;82212;82213;82214;82215;82216;82217;82218;82219;82220;82221;82222;82223;82224;82225;82226;82227;82228;82229;82230;82231;82232;82233;82234;82235;82236;82237	82212			33	
DWSFYLLYYTEFTPTEK	1	Unmodified	2202.0197	0.019738974	1963	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.8	2.19				1	2				3	1	2	3		98.674	90.714	2;3	7.8458E-85	51407	160513_QHF_FH_JSI9Kac_6	265.22	236.9			0.69986	0.7497	28.543	6	3	Median	1.0184	0.85783	NaN	1	1	Median	0.69986	0.82959	13.66	2	0	Median	0.52147	0.49162	25.735	3	2	Median	NaN	NaN	NaN	0	0	Median	517080000	300850000	216230000	127770000	66254000	61512000	384400000	231330000	153070000	4908800	3268900	1639900	0	0	0	9903	1963	9379	61046;61047;61048;61049;61050;61051	82238;82239;82240;82241;82242;82243;82244;82245	82241			8	
DWSHYFK	1	Unmodified	981.43447	0.43446642	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.51	5.08		26	10						7	11	11	8	13	54.247	51.806	2;3	0.0012559	44292	160511_QHF_FH_JSI12i_2	122.78	97.853			0.86087	0.87556	29.563	40	11	Median	1.0721	0.91404	35.07	10	3	Median	0.77399	0.9347	38.518	11	5	Median	0.89881	0.9124	12.14	8	1	Median	0.76747	0.82331	23.849	11	2	Median	10860000000	4899700000	5960500000	1736900000	725970000	1010900000	2914100000	1437100000	1477000000	3683200000	1510600000	2172700000	2526000000	1226000000	1300000000	9904	842	9380	61052;61053;61054;61055;61056;61057;61058;61059;61060;61061;61062;61063;61064;61065;61066;61067;61068;61069;61070;61071;61072;61073;61074;61075;61076;61077;61078;61079;61080;61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092;61093;61094	82246;82247;82248;82249;82250;82251;82252;82253;82254;82255;82256;82257;82258;82259;82260;82261;82262;82263;82264;82265;82266;82267;82268;82269;82270;82271;82272;82273;82274;82275;82276;82277;82278;82279;82280;82281;82282;82283;82284;82285;82286;82287;82288;82289;82290;82291;82292;82293;82294;82295;82296;82297;82298;82299;82300;82301;82302;82303;82304;82305;82306;82307;82308;82309;82310;82311;82312;82313;82314;82315;82316;82317;82318;82319;82320;82321;82322;82323;82324;82325;82326;82327;82328;82329;82330;82331;82332;82333;82334;82335;82336;82337;82338;82339;82340;82341;82342	82259			97	
DWSHYFKIIEDLR	1	Acetyl (K)	1762.8679	0.8678702	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	95.91	87.229	2;3	5.5279E-25	49126	160513_QHF_FH_JSI11Kac_6	170.66	108.88			0.5931	0.62172	59.317	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1375	1.3075	NaN	1	0	Median	0.33474	0.31548	1.529	2	0	Median	0.60199	0.63255	2.4432	2	0	Median	768880000	531990000	236880000	0	0	0	58587000	17306000	41281000	587580000	438260000	149320000	122710000	76432000	46277000	9905	842	9381	61095;61096;61097;61098;61099	82343;82344;82345;82346	82344	495		4	
DWSKVVLAYEPVWAIGTGK	2	Acetyl (K)	2160.1255	0.12554145	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		98.199	88.788	3	0.0012671	50802	160513_QHF_FH_JSI11Kac_6	73.405	58.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63158000	63158000	0	0	0	0	0	0	0	63158000	63158000	0	0	0	0	9906	1908	9382	61100	82347	82347	1906		1	
DWSNDVR	0	Unmodified	890.38824	0.38824451	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.362	23.811	2	0.0023385	21031	160511_QHF_FH_JSI12i_1	111.65	74.62			0.9921	0.96404	22.778	4	0	Median	1.0939	0.89623	NaN	1	0	Median	0.89974	1.037	NaN	1	0	Median	1.2899	1.2706	NaN	1	0	Median	0.69146	0.74161	NaN	1	0	Median	821130000	375610000	445520000	185790000	71500000	114290000	120590000	60578000	60009000	234100000	95081000	139020000	280650000	148450000	132200000	9907	2094	9383	61101;61102;61103;61104	82348;82349;82350;82351;82352;82353	82351			6	
DWSNLAGK	1	Unmodified	889.42938	0.42938104	5145	Q9NZ53	PODXL2	Podocalyxin-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.531	41.158	2	0.0039585	36966	160511_QHF_FH_JSI11i_1	77.058	59.21			1.483	1.5646	114.95	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59701	0.69408	NaN	1	1	Median	3.6836	3.5271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70124000	37697000	32427000	0	0	0	49687000	30806000	18881000	20437000	6891000	13546000	0	0	0	9908	5145	9384	61105;61106	82354;82355	82354			2	
DWSPTLYIR	0	Unmodified	1149.5819	0.58185893	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	6.17	3	4						3		1	3	3	3	77.282	73.699	2	8.7123E-06	64985	160511_QHF_FH_JSI12i_2	129.47	111.48			0.95138	0.9842	11.897	10	1	Median	1.1646	0.98046	NaN	1	0	Median	0.7509	0.89491	9.3147	3	0	Median	1.1774	1.1317	18.841	3	0	Plateau	0.97315	1.0453	1.424	3	1	Median	340560000	165260000	175300000	40372000	17995000	22377000	98066000	48987000	49079000	111490000	54209000	57279000	90633000	44070000	46563000	9909	1558	9385	61107;61108;61109;61110;61111;61112;61113;61114;61115;61116	82356;82357;82358;82359;82360;82361;82362;82363;82364;82365	82356			10	
DWTDYDEK	1	Unmodified	1070.4193	0.41926986	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.066	35.474	2	0.020088	32141	160511_QHF_FH_JSI12i_1	56.659	35.131			0.41477	0.43368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41477	0.43368	NaN	1	1	Median	45892000	27614000	18278000	0	0	0	0	0	0	0	0	0	45892000	27614000	18278000	9910	5075	9386	61117	82366	82366			1	
DWTSDVNVK	1	Unmodified	1062.4982	0.49818889	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.613	43.968	2	0.013094	39943	160511_QHF_FH_JSI12i_1	56.729	47.907			1.4248	1.4573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4248	1.4573	NaN	1	1	Median	68495000	24106000	44388000	0	0	0	0	0	0	0	0	0	68495000	24106000	44388000	9911	4581	9387	61118	82367	82367			1	
DWVLNEFK	1	Unmodified	1049.5182	0.51819605	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	76.719	76.15	2	0.0013947	67604	160511_QHF_FH_JSI10i_2	105.25	85.889			3.4803	3.4821	97.989	6	6	Median	4.7937	3.9757	146.69	2	2	Median	5.5535	6.6376	144.07	2	2	Median	4.4701	4.3993	NaN	1	1	Median	2.7097	2.7562	NaN	1	1	Median	1333500000	192080000	1141400000	378290000	42162000	336130000	693100000	88357000	604750000	175100000	34058000	141040000	87036000	27508000	59528000	9912	1128	9388	61119;61120;61121;61122;61123;61124	82368;82369;82370;82371;82372;82373	82373			6	
DWVLNEFR	0	Unmodified	1077.5243	0.52434406	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	77.13	76.201	2	0.012555	66927	160511_QHF_FH_JSI11i_2	62.107	36.371			0.50848	0.5225	10.066	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55992	0.56104	NaN	1	1	Median	0.46177	0.4866	NaN	1	1	Median	38668000	26701000	11966000	0	0	0	0	0	0	25326000	17333000	7993500	13342000	9368700	3972900	9913	3893	9389	61125;61126	82374;82375	82375			2	
DWVTPYK	1	Unmodified	907.44397	0.44396847	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.64	46.415	2	0.025149	41322	160511_QHF_FH_JSI9i_1	57.559	44.511			2.9297	2.3873	NaN	1	1	Median	2.9297	2.3873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16571000	4023100	12548000	16571000	4023100	12548000	0	0	0	0	0	0	0	0	0	9914	5352	9390	61127	82376	82376			1	
DWWNSTSYSNYYR	0	Unmodified	1740.7168	0.71684887	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.612	69.205	2	2.3823E-63	38742	160513_QHF_FH_JSI10Kac_6	229.53	203.41			1.1429	1.1775	9.3431	4	0	Median	1.4136	1.2421	NaN	1	0	Median	0.96298	1.1164	NaN	1	0	Median	1.3292	1.2832	NaN	1	0	Median	0.9827	1.0491	NaN	1	0	Median	162270000	82943000	79325000	28433000	15097000	13336000	81522000	42899000	38623000	22394000	10013000	12381000	29918000	14933000	14985000	9915	1439	9391	61128;61129;61130;61131	82377;82378;82379;82380;82381;82382;82383;82384	82384			8	
DWYPHSR	0	Unmodified	959.42496	0.42496436	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			3									2	1	23.533	23.524	2;3	0.010539	19945	160511_QHF_FH_JSI11i_3	65.038	26.8			0.99067	0.94876	34.861	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3304	1.214	NaN	1	0	Median	0.73768	0.74149	NaN	1	0	Median	159630000	74319000	85314000	0	0	0	0	0	0	71390000	33309000	38081000	88243000	41010000	47233000	9916	814	9392	61132;61133;61134	82385;82386	82386			2	
DWYVYAFLSSLPWVGK	1	Unmodified	1929.9665	0.96652161	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	4	1			101.88	93.39	2;3	3.4632E-23	53689	160513_QHF_FH_JSI9Kac_6	203.51	175.19			0.67886	0.80282	123.22	5	4	Median	0.59559	0.51457	142.24	4	4	Median	0.67886	0.80282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	663330000	370720000	292600000	460590000	254590000	205990000	202740000	116130000	86612000	0	0	0	0	0	0	9917	2284	9393	61135;61136;61137;61138;61139	82387;82388;82389;82390;82391;82392	82390			6	
DYAAYNVLDDPELR	0	Unmodified	1652.7682	0.76821573	3302	Q86SX6	GLRX5	Glutaredoxin-related protein 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.224	77.749	2	1.05E-29	69198	160511_QHF_FH_JSI9i_1	186.02	159.23			1.0483	0.97021	9.1025	4	0	Median	1.2143	0.99199	NaN	1	0	Median	0.74775	0.90036	NaN	1	0	Median	1.0171	0.94891	NaN	1	0	Median	1.0803	1.1149	NaN	1	0	Median	296660000	160760000	135900000	73777000	32660000	41117000	79139000	50528000	28611000	69808000	34711000	35097000	73935000	42861000	31075000	9918	3302	9394	61140;61141;61142;61143	82393;82394;82395;82396;82397;82398;82399;82400	82400			8	
DYAFIHFDER	0	Unmodified	1311.5884	0.58840088	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.32		5							2	2	1	3	1	70.436	67.281	3	0.00047542	60069	160511_QHF_FH_JSI10i_2	62.408	59.22			0.89729	0.93217	14.877	7	1	Median	1.2823	1.1184	3.4396	2	0	Median	0.73363	0.91929	NaN	1	0	Median	1.0225	1.0402	17.1	3	1	Plateau	0.8456	0.93217	NaN	1	0	Median	290730000	142030000	148700000	58667000	20723000	37944000	40594000	23042000	17552000	132290000	71165000	61124000	59183000	27100000	32083000	9919	423	9395	61144;61145;61146;61147;61148;61149;61150	82401;82402;82403;82404;82405;82406;82407;82408;82409;82410	82409			10	
DYAFIHFDERDGAVK	1	Unmodified	1781.8373	0.83729835	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	2	3	3	67.645	64.359	2;3	1.9644E-05	57105	160511_QHF_FH_JSI11i_3	119.31	102.63			1.1552	1.1411	23.471	9	1	Median	1.3567	1.1689	17.054	2	0	Median	1.1781	1.4273	31.652	2	0	Median	1.2058	1.1793	1.9983	2	0	Median	0.91333	0.98542	19.731	3	1	Median	629340000	290830000	338510000	82488000	35604000	46884000	130920000	67623000	63294000	295330000	121040000	174290000	120600000	66565000	54040000	9920	423	9396	61151;61152;61153;61154;61155;61156;61157;61158;61159;61160	82411;82412;82413;82414;82415;82416;82417;82418;82419;82420;82421	82412			10	
DYAFVHFEDR	0	Unmodified	1297.5728	0.57275081	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.86		6							4	2	3	3	2	64.506	60.073	2;3	2.1311E-05	51666	160511_QHF_FH_JSI12i_2	76.655	67.651			0.96807	0.98202	15.377	9	0	Median	1.2628	1.0891	19.121	2	0	Median	0.94245	1.1237	10.622	2	0	Median	0.96807	0.98202	13.923	3	0	Median	0.77991	0.86187	13.149	2	0	Median	769990000	355450000	414540000	103250000	46176000	57076000	168570000	75819000	92754000	282590000	123460000	159130000	215570000	109990000	105580000	9921	326	9397	61161;61162;61163;61164;61165;61166;61167;61168;61169;61170	82422;82423;82424;82425;82426;82427;82428;82429;82430	82422			8	
DYAFVHMEK	1	Unmodified	1138.5117	0.51173046	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.66	2	6						3	2	3	4	4	2	51.015	47.615	2;3	0.00054208	42055	160511_QHF_FH_JSI10i_2	88.948	55.151			0.77243	0.81391	87.887	11	10	Median	1.7962	1.4857	71.806	3	3	Median	0.58022	0.67993	86.871	3	3	Median	0.53274	0.52056	120.78	4	3	Median	0.77243	0.81391	NaN	1	1	Median	642690000	314110000	328590000	165120000	71863000	93256000	218130000	116790000	101340000	253660000	122500000	131160000	5785400	2954500	2830900	9922	4197	9398	61171;61172;61173;61174;61175;61176;61177;61178;61179;61180;61181;61182;61183	82431;82432;82433;82434;82435;82436;82437;82438;82439;82440;82441;82442;82443;82444	82442			14	
DYAFVHMER	0	Unmodified	1166.5179	0.51787847	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	56.145	46.972	3	0.0091714	25042	160513_QHF_FH_JSI9Kac_6	37.681	34.829			1.1245	1.2439	17.267	5	1	Median	1.2166	1.0333	NaN	1	0	Median	1.1413	1.367	2.2467	2	1	Median	0.94604	0.93305	NaN	1	0	Median	1.1189	1.2439	NaN	1	0	Median	41484000	21262000	20222000	8524300	4036100	4488200	16970000	8740600	8229200	12855000	7099300	5755500	3135200	1386400	1748700	9923	4498;4343	9399	61184;61185;61186;61187;61188	82445;82446;82447	82445			3	
DYALEKEK	2	Acetyl (K)	1036.5077	0.50769094	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					2	1	1	41.186	32.178	2	0.0078251	18331	160513_QHF_FH_JSI11Kac_3	78.516	47.287			0.35198	0.33794	178.14	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1017	1.3082	226.4	2	2	Median	0.35198	0.33794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10449000	6763400	3686000	0	0	0	3434900	1706000	1728900	7014500	5057400	1957100	0	0	0	9924	1411	9400	61189;61190;61191;61192	82448;82449;82450;82451;82452	82449	1367		5	
DYALHWLVLGTHTSDEQNHLVVAR	0	Unmodified	2773.3936	0.39361124	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.34			7						11	3	2	6	7	83.339	78.12	3;4;5	6.8453E-130	41071	160513_QHF_FH_JSI10Kac_6	256.07	230.25			1.247	1.2023	19.95	18	4	Median	1.5596	1.41	10.314	3	1	Plateau	0.80595	0.95126	5.6887	2	0	Median	1.3312	1.2505	25.276	6	2	Median	1.1495	1.1855	17.456	7	1	Median	8359600000	3029200000	5330400000	4784300000	1377000000	3407300000	1663300000	863960000	799390000	1103300000	421070000	682200000	808760000	367190000	441570000	9925	2741	9401	61193;61194;61195;61196;61197;61198;61199;61200;61201;61202;61203;61204;61205;61206;61207;61208;61209;61210	82453;82454;82455;82456;82457;82458;82459;82460;82461;82462;82463;82464;82465;82466;82467;82468;82469;82470;82471;82472	82472			18	
DYAPPPR	0	Unmodified	814.39735	0.39735263	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	21.96	14.685	2	0.025925	9641	160513_QHF_FH_JSI11Kac_3	64.776	51.569			0.8783	0.90619	14.54	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0259	1.0043	NaN	1	0	Median	0.75196	0.81765	NaN	1	0	Median	7389700	4063300	3326400	0	0	0	0	0	0	3956300	2082500	1873800	3433400	1980800	1452600	9926	1474	9402	61211;61212	82473;82474;82475	82474			3	
DYAPPPRDYTYR	0	Unmodified	1512.6997	0.69974224	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	35.157	34.335	2;3	1.9876E-05	29309	160511_QHF_FH_JSI11i_2	89.301	66.723			0.99771	1.0651	16.876	7	5	Median	1.4395	1.2113	5.6445	2	2	Median	0.93904	1.1525	11.151	2	2	Median	0.89497	0.86166	10.182	2	1	Median	0.84238	0.95715	NaN	1	0	Median	735110000	350610000	384500000	185900000	75604000	110300000	262090000	134580000	127510000	219200000	107100000	112090000	67927000	33328000	34600000	9927	1474	9403	61213;61214;61215;61216;61217;61218;61219;61220;61221;61222	82476;82477;82478;82479;82480;82481;82482;82483;82484;82485	82481			9	
DYAVSTVPVADGLHLK	1	Unmodified	1683.8832	0.88318591	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								2	4	3	4	72.633	71.957	2;3	6.3492E-06	65190	160511_QHF_FH_JSI10i_1	98.943	94.139			0.88657	0.95298	24.754	13	6	Median	1.5028	1.2595	31.252	2	0	Median	0.83535	0.98034	17.63	4	2	Median	0.76173	0.7643	17.612	3	2	Median	0.81527	0.88172	27.006	4	2	Median	809460000	418320000	391140000	135010000	48296000	86715000	243480000	136920000	106570000	212030000	119030000	93000000	218930000	114080000	104860000	9928	603	9404	61223;61224;61225;61226;61227;61228;61229;61230;61231;61232;61233;61234;61235	82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501	82495			16	
DYCAHHLIR	0	Unmodified	1183.5557	0.55566096	1120	P17568	NDUFB7	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.969	40.759	2	0.013843	34982	160511_QHF_FH_JSI12i_3	56.011	13.902			14.228	14.2	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.228	14.2	NaN	1	1	Median	130590000	12037000	118550000	0	0	0	0	0	0	0	0	0	130590000	12037000	118550000	9929	1120	9405	61236	82502	82502			1	
DYDAMGSQTK	1	Unmodified	1114.4601	0.46008882	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	3	2	20.547	18.858	2	1.645E-09	16492	160511_QHF_FH_JSI12i_1	133.13	123.55			0.47903	0.52518	82.831	6	4	Median	0.87035	0.72304	NaN	1	0	Median	0.4601	0.54268	NaN	1	1	Median	0.47903	0.48903	5.4533	2	2	Median	1.2077	1.2529	156.05	2	1	Median	449290000	252820000	196470000	119010000	65250000	53763000	143180000	76242000	66942000	76972000	43988000	32984000	110120000	67342000	42779000	9930	5487	9406	61237;61238;61239;61240;61241;61242;61243	82503;82504;82505;82506;82507;82508;82509	82505			7	
DYDDMSPR	0	Oxidation (M)	1013.376	0.37602484	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	15.567	15.217	2	0.0025984	8157	160511_QHF_FH_JSI12i_1	85.642	75.655			0.95619	1.0048	8.7984	7	0	Median	1.2241	1.0048	NaN	1	0	Median	0.87317	1.0269	5.5358	2	0	Median	1.0551	1.0379	11.784	2	0	Median	0.98289	1.016	16.922	2	0	Median	1294600000	647470000	647140000	138860000	62842000	76021000	455030000	225430000	229590000	415970000	202570000	213400000	284750000	156630000	128120000	9931	1975	9407	61244;61245;61246;61247;61248;61249;61250;61251	82510;82511;82512;82513;82514;82515;82516;82517;82518;82519	82514		1637	10	
DYDDMSPR	0	Unmodified	997.38111	0.38111022	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				3	3	3	3	23.435	19.654	1;2	8.4844E-07	18556	160511_QHF_FH_JSI9i_1	151.27	151.27			1.0346	1.0509	18.233	12	0	Median	1.4643	1.1726	9.9805	3	0	Plateau	0.92586	1.0716	10.219	3	0	Median	1.2126	1.1913	13.858	3	0	Median	0.69945	0.74805	14.649	3	0	Plateau	5999600000	2950900000	3048700000	1402400000	577250000	825140000	1414800000	701630000	713130000	1554600000	782830000	771800000	1627800000	889150000	738660000	9932	1975	9407	61252;61253;61254;61255;61256;61257;61258;61259;61260;61261;61262;61263	82520;82521;82522;82523;82524;82525;82526;82527;82528;82529;82530;82531;82532;82533;82534;82535;82536;82537;82538	82532			16	
DYDFEER	0	Unmodified	972.38249	0.38249043	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	32.022	31.42	2	0.022022	28090	160511_QHF_FH_JSI11i_1	56.27	51.415			1.0159	1.009	14.682	4	0	Median	1.0761	0.9089	NaN	1	0	Median	0.95907	1.1202	NaN	1	0	Median	1.2668	1.1947	NaN	1	0	Median	0.86886	0.89328	NaN	1	0	Median	269780000	134890000	134890000	66168000	30911000	35257000	91334000	45404000	45930000	64656000	32127000	32529000	47624000	26446000	21178000	9933	4182	9408	61264;61265;61266;61267	82539;82540;82541;82542	82539			4	
DYDHLFK	1	Unmodified	936.43413	0.43413207	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	42.078	41.213	2;3	0.0019722	35327	160511_QHF_FH_JSI12i_2	79.597	60.866			0.81493	0.87966	19.913	5	1	Median	0.96299	0.8353	NaN	1	0	Median	0.76705	0.90965	NaN	1	0	Median	0.70336	0.7082	30.661	2	1	Median	0.81493	0.9122	NaN	1	0	Median	385220000	235990000	149230000	56443000	27221000	29222000	49736000	24453000	25283000	206890000	141210000	65675000	72161000	43107000	29054000	9934	2649	9409	61268;61269;61270;61271;61272;61273	82543;82544;82545;82546;82547;82548;82549;82550;82551	82544			9	
DYDLLVVGGGSGGLACAK	1	Unmodified	1750.856	0.85598488	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.322	81.965	2	0.00065348	74677	160511_QHF_FH_JSI11i_1	60.628	37.023			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9935	4879	9410	61274	82552	82552			1	
DYDPVAAR	0	Unmodified	905.4243	0.42429566	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	28.564	26.374	2	0.0004666	23605	160511_QHF_FH_JSI12i_1	107.32	91.163			0.99063	0.9751	21.251	5	0	Median	1.2	0.9751	NaN	1	0	Median	0.76826	0.90893	37.095	2	0	Median	1.1522	1.1391	NaN	1	0	Median	0.82552	0.88	NaN	1	0	Median	1844000000	864760000	979270000	427670000	159360000	268310000	584080000	309980000	274100000	412300000	189280000	223020000	419980000	206140000	213840000	9936	2698	9411	61275;61276;61277;61278;61279;61280	82553;82554;82555;82556;82557;82558;82559;82560;82561;82562;82563	82556			11	
DYDRDKDDK	2	Unmodified	1168.4996	0.49964545	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							1	3	3	2	5.2073	4.9291	2;3	1.2166E-05	2557	160511_QHF_FH_JSI12i_3	146.69	126.56			0.93829	1.0075	28.875	9	3	Median	1.6954	1.5093	NaN	1	0	Median	0.88733	1.0871	27.114	3	1	Plateau	0.92399	0.89523	7.5372	3	1	Median	0.77414	0.82573	33.234	2	1	Median	834510000	401590000	432930000	46435000	16088000	30347000	262410000	119870000	142530000	285580000	139110000	146470000	240090000	126510000	113580000	9937	2652	9412	61281;61282;61283;61284;61285;61286;61287;61288;61289	82564;82565;82566;82567;82568;82569;82570;82571	82571			8	
DYDSFVLPLLEDK	1	Unmodified	1552.7661	0.76609047	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.98	101.88	2	1.1883E-22	92616	160511_QHF_FH_JSI11i_1	180.97	171.01			1.1239	1.0317	17.359	4	0	Median	1.2295	0.99749	NaN	1	0	Median	0.68273	0.80251	NaN	1	0	Median	1.2762	1.2156	NaN	1	0	Median	1.0275	1.0671	NaN	1	0	Median	409120000	209590000	199520000	69213000	39466000	29747000	113970000	68686000	45286000	106840000	47382000	59456000	119090000	54056000	65036000	9938	2306	9413	61290;61291;61292;61293	82572;82573;82574;82575;82576;82577	82572			6	
DYDVEIR	0	Unmodified	908.42396	0.42396131	1713	P50583	NUDT2	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	38.956	38.046	2	0.044649	33565	160511_QHF_FH_JSI9i_1	45.081	19.345			0.96964	0.89878	19.464	2	0	Median	1.2328	1.0314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76268	0.78321	NaN	1	0	Median	196480000	102950000	93529000	79045000	40437000	38608000	0	0	0	0	0	0	117430000	62509000	54921000	9939	1713	9414	61294;61295	82578	82578			1	
DYDWINAER	0	Unmodified	1180.5149	0.51490158	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	57.727	56.989	2	0.0020379	51342	160511_QHF_FH_JSI12i_1	66.435	61.822			1.5156	1.4261	29.77	3	1	Median	2.3502	1.9191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5156	1.4261	NaN	1	0	Median	0.99639	1.0581	NaN	1	0	Median	179870000	75656000	104220000	73611000	29985000	43626000	0	0	0	63363000	23946000	39417000	42901000	21726000	21175000	9940	679	9415	61296;61297;61298	82579;82580;82581;82582	82580			3	
DYEAGQLYGLEK	1	Unmodified	1384.6511	0.65106071	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	59.031	58.433	2	9.8969E-11	53030	160511_QHF_FH_JSI12i_1	145.28	102.94			0.84284	0.84445	57.714	5	4	Median	0.84284	0.68277	NaN	1	1	Median	0.63261	0.74675	99.175	2	2	Median	1.449	1.4256	NaN	1	1	Median	0.80737	0.84445	NaN	1	0	Median	1069600000	655570000	414050000	268150000	176410000	91742000	359380000	235680000	123690000	203920000	97768000	106150000	238170000	145710000	92462000	9941	3132	9416	61299;61300;61301;61302;61303;61304	82583;82584;82585;82586;82587;82588;82589;82590	82584			8	
DYEEIGPSICR	0	Unmodified	1337.5922	0.59216562	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	50.174	49.5	2	0.00060923	44743	160511_QHF_FH_JSI11i_1	83.883	71.836			1.1385	1.1647	23.058	5	5	Median	1.9125	1.5678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.003	0.98656	23.477	2	2	Median	1.0577	1.1191	11.634	2	2	Median	491760000	229660000	262100000	74914000	28504000	46410000	0	0	0	233240000	119590000	113650000	183610000	81574000	102030000	9942	1939	9417	61305;61306;61307;61308;61309	82591;82592;82593;82594;82595	82591			5	
DYEETELISTTANYR	0	Unmodified	1803.8163	0.81628814	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.263	65.662	2	1.1781E-20	59488	160511_QHF_FH_JSI10i_1	218.54	170.1			0.91427	0.94954	15.186	4	2	Median	1.2052	1.0215	NaN	1	0	Median	0.98194	1.142	NaN	1	1	Median	0.85126	0.81153	NaN	1	0	Median	0.82547	0.88269	NaN	1	1	Median	146470000	63249000	83220000	36712000	16660000	20052000	39469000	14667000	24802000	29992000	14693000	15299000	40297000	17230000	23067000	9943	2353	9418	61310;61311;61312;61313	82596;82597;82598;82599;82600	82598			5	
DYEEVGADSADGEDEGEEY	0	Unmodified	2077.7396	0.73961354	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	2	1	2	53.552	49.967	2	3.235E-32	46037	160511_QHF_FH_JSI11i_1	185.18	185.18			1.031	1.0156	25.333	6	0	Median	1.1687	0.95544	NaN	1	0	Median	0.79074	0.92317	15.945	2	0	Median	1.7499	1.715	NaN	1	0	Median	1.031	1.0959	13.212	2	0	Median	1309000000	612450000	696600000	101280000	54262000	47014000	489790000	292950000	196840000	392140000	137130000	255010000	325830000	128100000	197730000	9944	4359	9419	61314;61315;61316;61317;61318;61319	82601;82602;82603;82604;82605;82606;82607;82608;82609;82610	82601			10	
DYEEVGVDSVEGEGEEEGEEY	0	Unmodified	2347.8976	0.89757075	2073	P68363	TUBA1B	Tubulin alpha-1B chain	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	1	2	68.065	67.586	2	1.4595E-17	61814	160511_QHF_FH_JSI11i_1	147.58	147.58			1.1126	1.1661	18.589	4	0	Median	NaN	NaN	NaN	0	0	Median	0.99508	1.1584	NaN	1	0	Median	1.0739	1.0397	NaN	1	0	Median	1.3314	1.3711	21.962	2	0	Median	304600000	147490000	157110000	0	0	0	138970000	71909000	67064000	60761000	29389000	31372000	104870000	46194000	58671000	9945	2073	9420	61320;61321;61322;61323;61324;61325	82611;82612;82613;82614;82615;82616;82617;82618;82619;82620	82612			10	
DYEFMWNPHLGYILTCPSNLGTGLR	0	Unmodified	2953.3891	0.38911949	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.288	86.895	3	1.1945E-129	51274	160513_QHF_FH_JSI10Kac_6	252.21	232.66			1.0616	1.2501	7.2247	4	1	Linear	1.599	1.3572	NaN	1	0	Median	1.0821	1.2763	NaN	1	0	Median	1.2922	1.2245	NaN	1	1	Median	1.0775	1.1428	NaN	1	0	Median	1058700000	460890000	597820000	95590000	37172000	58418000	357820000	193000000	164820000	228430000	66180000	162250000	376870000	164540000	212330000	9946	1017	9421	61326;61327;61328;61329	82621;82622;82623;82624;82625;82626	82626			6	
DYEFMWNPHLGYILTCPSNLGTGLR	0	Oxidation (M)	2969.384	0.38403411	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	93.153	83.711	3	5.9218E-35	45224	160513_QHF_FH_JSI12Kac_6	160.43	141.22			1.3928	1.4615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3928	1.4615	NaN	1	0	Median	32214000	15438000	16777000	0	0	0	0	0	0	0	0	0	32214000	15438000	16777000	9947	1017	9421	61330	82627	82627		608	1	
DYEIESQNPLASPTNTLLGSAK	1	Unmodified	2347.1543	0.15433498	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	88.605	88.166	3	8.77E-06	80209	160511_QHF_FH_JSI12i_1	60.278	55.519			1.1731	1.0051	17.487	4	1	Linear	1.8149	1.4642	NaN	1	1	Median	0.79972	0.95452	NaN	1	0	Median	1.2214	1.1629	NaN	1	0	Median	1.1267	1.1841	NaN	1	0	Median	124230000	65173000	59058000	20389000	8975400	11414000	44268000	26657000	17611000	38094000	20183000	17910000	21480000	9357100	12123000	9948	3264	9422	61331;61332;61333;61334;61335	82628;82629;82630;82631;82632;82633;82634;82635	82631			8	
DYEILFK	1	Unmodified	926.47493	0.47493425	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.52	7	4					1			2	3	2	5	72.703	71.208	2	0.0049729	64909	160511_QHF_FH_JSI12i_1	105.39	30.08			0.55197	0.57826	100.38	12	12	Median	0.28228	0.23924	16.44	2	2	Median	0.39615	0.48413	90.339	3	3	Median	0.96483	0.931	115.28	2	2	Median	2.034	2.24	89.109	5	5	Median	715660000	358070000	357590000	72576000	52264000	20312000	186580000	102920000	83656000	207410000	98333000	109080000	249090000	104550000	144540000	9949	3891	9423	61336;61337;61338;61339;61340;61341;61342;61343;61344;61345;61346;61347	82636;82637;82638;82639;82640;82641;82642;82643;82644;82645;82646;82647;82648;82649;82650;82651	82641			16	
DYELQLASYTSGLETLLNIPIK	1	Unmodified	2480.305	0.30502196	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	101.75	96.98	3	2.5759E-06	90955	160511_QHF_FH_JSI11i_2	87.772	79.969			1.0102	1.0552	21.391	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2043	1.2275	NaN	1	1	Median	0.84747	0.90704	NaN	1	0	Median	114540000	59838000	54697000	0	0	0	0	0	0	28118000	11700000	16419000	86417000	48138000	38278000	9950	1085	9424	61348;61349	82652;82653	82652			2	
DYELQLVTYK	1	Unmodified	1270.6445	0.64451877	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	71.137	70.728	2	8.3964E-07	64385	160511_QHF_FH_JSI12i_1	123.6	95.422			0.91321	0.99377	14.574	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94712	1.1016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88051	0.89646	NaN	1	1	Median	127560000	57471000	70086000	0	0	0	71880000	33718000	38162000	0	0	0	55677000	23753000	31924000	9951	2636	9425	61350;61351;61352	82654;82655;82656	82655			3	
DYEMNANHK	1	Unmodified	1120.4608	0.46075752	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.64	11.242	2	0.00080141	8947	160511_QHF_FH_JSI10i_1	78.77	48.963			0.25566	0.2529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25566	0.2529	NaN	1	1	Median	15340000	12682000	2658400	0	0	0	0	0	0	0	0	0	15340000	12682000	2658400	9952	5066	9426	61353;61354	82657;82658	82658			2	
DYENDEDVNK	1	Unmodified	1239.4891	0.48914034	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					1	3	2	2	16.557	14.245	2	1.9788E-11	11885	160511_QHF_FH_JSI9i_1	152.34	133.9			0.72756	0.85439	28.605	7	3	Median	1.2416	1.0384	NaN	1	0	Median	0.64363	0.74475	19.423	2	1	Median	0.91971	0.90297	58.567	2	2	Median	0.73411	0.78417	12.821	2	0	Median	634030000	306160000	327870000	145880000	53389000	92490000	143070000	70022000	73045000	206610000	105310000	101300000	138480000	77443000	61037000	9953	347	9427	61355;61356;61357;61358;61359;61360;61361;61362	82659;82660;82661;82662;82663;82664;82665;82666;82667	82665			9	
DYETATLSEIK	1	Unmodified	1268.6136	0.61361257	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	59.151	54.731	2	4.7034E-13	49190	160511_QHF_FH_JSI10i_1	147.4	137.17			0.90149	0.97976	29.134	7	2	Median	0.81669	0.65989	NaN	1	0	Median	0.65719	0.78002	1.0685	2	1	Median	1.4135	1.3794	1.1892	2	0	Median	0.96614	1.0417	8.6753	2	1	Median	975040000	480590000	494450000	265930000	151460000	114470000	223600000	133470000	90139000	219540000	75753000	143790000	265960000	119910000	146050000	9954	1021	9428	61363;61364;61365;61366;61367;61368;61369	82668;82669;82670;82671;82672;82673;82674;82675;82676;82677;82678;82679;82680;82681;82682	82676			15	
DYETVVK	1	Unmodified	852.4229	0.42289868	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.898	26.35	2	0.023013	23454	160511_QHF_FH_JSI12i_1	58.981	24.264			0.16082	0.16997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16082	0.16997	NaN	1	1	Median	50198000	39380000	10817000	0	0	0	0	0	0	0	0	0	50198000	39380000	10817000	9955	1793	9429	61370	82683	82683			1	
DYEVELLR	0	Unmodified	1035.5237	0.52367535	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.671	63.032	2	0.0024882	57355	160511_QHF_FH_JSI12i_1	79.713	70.85			1.027	1.0454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.027	1.0454	NaN	1	0	Median	84755000	47205000	37550000	0	0	0	0	0	0	0	0	0	84755000	47205000	37550000	9956	1117	9430	61371	82684	82684			1	
DYEVSDSAPHLEGLAEFQENVRK	1	Unmodified	2632.2405	0.24052422	4845	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.664	73.664	3	2.7447E-09	65775	160511_QHF_FH_JSI11i_3	87.156	84.19			0.75283	0.70356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75283	0.70356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38102000	18073000	20028000	0	0	0	0	0	0	38102000	18073000	20028000	0	0	0	9957	4845	9431	61372	82685;82686;82687;82688	82688			4	
DYFDMFAPK	1	Unmodified	1132.4899	0.48993238	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.988	82.522	2	0.00039322	74937	160511_QHF_FH_JSI12i_1	81.548	64.772			1.0172	1.0202	14.355	4	0	Median	0.99734	0.80116	NaN	1	0	Median	0.84984	1.0048	NaN	1	0	Median	1.1111	1.0358	NaN	1	0	Median	1.0375	1.1189	NaN	1	0	Median	178840000	92377000	86462000	39294000	17521000	21773000	52801000	32907000	19894000	50058000	21417000	28641000	36687000	20532000	16154000	9958	1640	9432	61373;61374;61375;61376	82689;82690;82691;82692;82693;82694;82695;82696;82697;82698	82691			10	
DYFEEYGK	1	Unmodified	1049.4342	0.43419164	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	2	3	50.261	44.494	2	2.3633E-05	39924	160511_QHF_FH_JSI9i_1	138.9	121.51			0.92296	0.95827	12.752	9	0	Median	1.1858	0.97056	NaN	1	0	Median	0.92296	1.0654	16.04	3	0	Median	0.98277	0.97526	2.4856	2	0	Median	0.78146	0.83803	10.162	3	0	Median	4174400000	2295700000	1878600000	698890000	276620000	422270000	1255900000	744380000	511500000	1193700000	627910000	565800000	1025900000	646810000	379080000	9959	1212	9433	61377;61378;61379;61380;61381;61382;61383;61384;61385	82699;82700;82701;82702;82703;82704;82705;82706;82707;82708;82709;82710;82711;82712;82713;82714;82715;82716;82717;82718;82719	82714			21	
DYFEQYGK	1	Unmodified	1048.4502	0.45017606	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			2	3	4	3	46.655	41.835	2	4.8281E-05	23129	160513_QHF_FH_JSI11Kac_3	129.4	119.81			1.0577	1.0375	29.587	11	1	Median	1.1981	0.99926	20.781	2	0	Median	1.1292	1.3197	44.193	3	1	Plateau	1.2303	1.2063	10.112	3	0	Median	0.79088	0.84088	37.17	3	0	Plateau	5494900000	2618800000	2876100000	887770000	382860000	504910000	1522200000	707200000	815000000	1907600000	886520000	1021100000	1177300000	642210000	535090000	9960	936	9434	61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397	82720;82721;82722;82723;82724;82725;82726;82727;82728;82729;82730;82731;82732;82733;82734;82735;82736;82737;82738;82739;82740;82741;82742;82743;82744	82730			25	
DYFFALAHTVR	0	Unmodified	1338.6721	0.67207093	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.81		5	2						9	3	3	6	4	78.533	73.364	2;3	5.0245E-15	38709	160513_QHF_FH_JSI11Kac_6	157.75	139.43			1.1461	1.1555	44.678	14	7	Median	1.5137	1.2865	50.509	3	2	Median	0.73999	0.88054	33.695	2	1	Median	1.396	1.3002	57.814	6	4	Median	1.0542	1.1468	24.634	3	0	Median	776190000	371980000	404210000	202830000	96472000	106360000	184550000	92729000	91818000	296230000	140850000	155380000	92584000	41935000	50649000	9961	992	9435	61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413	82745;82746;82747;82748;82749;82750;82751;82752;82753;82754;82755;82756;82757;82758;82759;82760;82761;82762;82763	82749			19	
DYFGAHTYELLAK	1	Unmodified	1526.7405	0.74054442	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		8	6						8	6	6	5	5	74.369	70.716	2;3	1.1503E-52	63177	160511_QHF_FH_JSI11i_2	212.82	192.04			0.87394	0.8411	18.046	22	5	Median	1.0026	0.83042	9.2494	6	0	Median	0.70234	0.80868	26.582	6	2	Median	0.92373	0.90261	15.17	5	2	Median	0.7682	0.85433	20.315	5	1	Median	3104000000	1624600000	1479400000	687470000	350860000	336610000	823070000	467720000	355350000	892710000	473010000	419690000	700760000	333040000	367720000	9962	1764	9436	61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435	82764;82765;82766;82767;82768;82769;82770;82771;82772;82773;82774;82775;82776;82777;82778;82779;82780;82781;82782;82783;82784;82785;82786;82787;82788;82789;82790;82791;82792;82793;82794;82795;82796;82797;82798;82799;82800;82801;82802;82803;82804;82805;82806;82807;82808;82809;82810;82811;82812;82813	82794			50	
DYFGLLFQESPEQK	1	Unmodified	1699.8094	0.80935227	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	98.179	97.979	2	3.1642E-07	88606	160511_QHF_FH_JSI10i_1	90.653	76.747			0.86164	0.90384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86164	0.90384	NaN	1	0	Median	20815000	12926000	7888800	0	0	0	0	0	0	0	0	0	20815000	12926000	7888800	9963	339	9437	61436;61437;61438;61439	82814;82815;82816;82817	82816			4	
DYFLFNPVTDIEEIIR	0	Unmodified	1982.9989	0.99894395	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2.25	0.433		3	1							1	1	2		103.61	103.55	2	3.4369E-15	91253	160511_QHF_FH_JSI11i_2	162.22	138.85			0.7917	0.75124	29.612	4	2	Median	0.71685	0.62253	NaN	1	1	Median	0.42133	0.54217	NaN	1	0	Median	0.95703	0.95584	7.4848	2	1	Median	NaN	NaN	NaN	0	0	Median	72209000	42980000	29230000	13719000	8759300	4960000	12796000	8294000	4502200	45694000	25926000	19768000	0	0	0	9964	3071	9438	61440;61441;61442;61443	82818;82819;82820;82821	82820			4	
DYFLFRDGDILGK	1	Unmodified	1557.7827	0.78274359	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	91.796	91.391	3	0.00015439	78963	160511_QHF_FH_JSI12i_3	57.804	45.828			0.70544	0.72707	22.565	4	0	Median	0.79245	0.68825	NaN	1	0	Median	0.62798	0.76809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59919	0.63292	35.706	2	0	Median	148270000	98460000	49813000	15021000	8562200	6459100	32733000	20601000	12132000	0	0	0	100520000	69297000	31222000	9965	1959	9439	61444;61445;61446;61447	82822;82823;82824;82825;82826;82827;82828	82827			6	
DYFNVPYPLPK	1	Unmodified	1351.6812	0.68123863	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	86.403	85.951	2;3	2.5487E-09	77925	160511_QHF_FH_JSI10i_1	129.1	117.39			0.90875	0.94569	9.9658	8	0	Median	1.1707	0.97708	11.428	2	0	Median	0.86994	1.0169	3.4632	2	0	Median	0.8828	0.85865	6.0958	2	0	Median	0.88202	0.91571	13.571	2	0	Median	1082500000	549760000	532700000	230630000	110820000	119810000	273690000	157270000	116420000	331510000	157780000	173730000	246620000	123880000	122740000	9966	1862	9440	61448;61449;61450;61451;61452;61453;61454;61455	82829;82830;82831;82832;82833;82834;82835;82836;82837;82838;82839;82840;82841;82842;82843;82844;82845;82846;82847;82848;82849;82850;82851	82840			23	
DYFYASRPESQALPYGDISELK	1	Unmodified	2548.2122	0.21218421	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	83.941	83.38	3	1.2191E-12	74074	160511_QHF_FH_JSI10i_2	103.95	90.491			1.1217	0.82882	20.621	7	3	Linear	0.6825	0.59625	NaN	1	0	Median	0.64024	0.75933	27.753	2	1	Median	0.85622	0.83154	0.4636	2	1	Median	0.82422	0.89149	24.772	2	1	Median	743860000	376730000	367120000	45698000	23478000	22220000	197230000	103540000	93696000	247570000	119840000	127730000	253360000	129880000	123480000	9967	3301	9441	61456;61457;61458;61459;61460;61461;61462;61463	82852;82853;82854;82855;82856;82857;82858;82859	82859			8	
DYFYASRPESQALPYGDISELKK	2	Unmodified	2676.3071	0.30714722	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			4									2	2	75.249	75.154	3;4	4.9042E-08	65164	160511_QHF_FH_JSI12i_3	77.045	73.451			0.97863	0.97898	58.411	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87872	0.83183	81.528	2	2	Median	0.97863	0.97898	NaN	1	0	Median	197100000	106410000	90689000	0	0	0	0	0	0	104460000	60875000	43586000	92642000	45539000	47103000	9968	3301	9442	61464;61465;61466;61467	82860;82861;82862;82863;82864	82863			5	
DYGKESQAK	2	Acetyl (K)	1066.4931	0.49310351	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4					3	2	2	18.101	10.918	2	4.1796E-05	6196	160513_QHF_FH_JSI10Kac_2	105.52	86.738			0.47775	0.53115	129.99	6	4	Median	NaN	NaN	NaN	0	0	Median	0.42953	0.50827	201.78	3	3	Median	0.44072	0.41838	NaN	1	0	Median	0.60812	0.64123	20.412	2	1	Median	42961000	28527000	14434000	0	0	0	10592000	7068900	3523500	13363000	10110000	3253400	19005000	11348000	7657400	9969	1258	9443	61468;61469;61470;61471;61472;61473;61474	82865;82866;82867;82868;82869;82870;82871;82872;82873	82868	1151		9	
DYGNSPLHR	0	Unmodified	1057.4941	0.49410656	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.69	6.42		8	6				1	10	7	8	5	10	9	22.369	17.188	2;3	2.7482E-08	15390	160511_QHF_FH_JSI10i_2	160.26	138.58			1.0242	1.0784	19.325	29	3	Median	1.392	1.1795	8.1169	6	1	Median	0.90385	1.1189	9.6964	4	0	Median	1.0415	1.0595	28.611	10	2	Median	0.86457	0.9707	11.771	9	0	Median	5140600000	2532800000	2607800000	761620000	335290000	426320000	771070000	379370000	391700000	2043200000	1043100000	1000100000	1564800000	775100000	789690000	9970	1281	9444	61475;61476;61477;61478;61479;61480;61481;61482;61483;61484;61485;61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501;61502;61503;61504;61505;61506	82874;82875;82876;82877;82878;82879;82880;82881;82882;82883;82884;82885;82886;82887;82888;82889;82890;82891;82892;82893;82894;82895;82896;82897;82898;82899;82900;82901;82902;82903;82904;82905;82906;82907;82908;82909;82910;82911;82912;82913;82914;82915;82916;82917;82918;82919	82906			45	
DYGVLLEGSGLALR	0	Unmodified	1461.7827	0.78274359	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	2.67	8	11	5					1		7	6	7	5	94.051	93.203	2;3	5.1542E-22	85374	160511_QHF_FH_JSI11i_1	194.17	165.44			1.0167	0.94026	36.329	24	12	Median	1.1896	1.0247	46.386	7	5	Median	0.71033	0.8325	37.328	6	3	Median	1.0056	0.94713	28.749	7	2	Median	0.99417	1.0535	32.729	4	2	Median	4660100000	2240200000	2419900000	675630000	294010000	381620000	1616500000	825290000	791240000	1380000000	637580000	742420000	987940000	483320000	504620000	9971	1338	9445	61507;61508;61509;61510;61511;61512;61513;61514;61515;61516;61517;61518;61519;61520;61521;61522;61523;61524;61525;61526;61527;61528;61529;61530;61531	82920;82921;82922;82923;82924;82925;82926;82927;82928;82929;82930;82931;82932;82933;82934;82935;82936;82937;82938;82939;82940;82941;82942;82943;82944;82945;82946;82947;82948;82949;82950;82951;82952;82953;82954;82955;82956;82957;82958;82959	82923			40	
DYGVQLVEEGADTFTAK	1	Unmodified	1841.8683	0.86832371	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	89.706	89.269	2;3	6.9255E-11	81265	160511_QHF_FH_JSI11i_1	106.13	81.275			1.2477	1.2445	24.431	5	4	Median	1.4767	1.2445	NaN	1	1	Median	1.2477	1.4461	NaN	1	0	Median	1.549	1.4844	NaN	1	1	Median	0.9568	0.95677	23.419	2	2	Median	64635000	31072000	33563000	8275600	2455400	5820200	14397000	7146400	7250300	8632000	3790000	4842000	33331000	17681000	15650000	9972	5173	9446	61532;61533;61534;61535;61536;61537;61538;61539	82960;82961;82962;82963;82964;82965;82966;82967	82961			8	
DYGVYLEDSGHTLR	0	Unmodified	1623.7529	0.75290002	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.17	5	8	2					7		4	5	7	6	61.184	57.317	2;3	1.1998E-21	49900	160511_QHF_FH_JSI11i_2	199.7	181.88			0.9485	0.95077	42.707	19	8	Median	1.0915	0.93071	22.292	3	1	Median	0.82276	0.98624	20.459	4	2	Median	1.0876	1.1077	49.761	7	2	Median	0.90443	0.95077	53.836	5	3	Median	7163200000	3761900000	3401300000	1088100000	501740000	586320000	1469000000	795900000	673100000	2432600000	1163100000	1269500000	2173500000	1301100000	872360000	9973	2364	9447	61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550;61551;61552;61553;61554;61555;61556;61557;61558;61559;61560;61561	82968;82969;82970;82971;82972;82973;82974;82975;82976;82977;82978;82979;82980;82981;82982;82983;82984;82985;82986;82987;82988;82989;82990;82991;82992;82993;82994;82995;82996;82997;82998;82999;83000	82989			33	
DYHFKVDNDENEHQLSLR	1	Acetyl (K)	2300.0458	0.045787579	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	64.957	55.78	3;4	2.7607E-56	30785	160513_QHF_FH_JSI10Kac_6	194.27	187.42			0.86832	0.86185	39.738	8	0	Median	1.2157	1.0403	6.6484	2	0	Median	1.1089	1.3197	3.9866	2	0	Median	0.51628	0.49271	0.77432	2	0	Median	0.68957	0.74249	1.123	2	0	Median	1273900000	739770000	534080000	83879000	40087000	43792000	355870000	172650000	183220000	686790000	438310000	248480000	147310000	88717000	58597000	9974	857	9448	61562;61563;61564;61565;61566;61567;61568;61569	83001;83002;83003;83004;83005;83006;83007;83008;83009;83010;83011;83012;83013;83014;83015	83014	540		15	
DYHNLFSPR	0	Unmodified	1147.5411	0.54105675	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	4	2	46.694	46.173	2;3	0.0017374	39872	160511_QHF_FH_JSI11i_2	45.158	37.233			0.92997	0.90067	31.184	8	3	Median	0.67395	0.59805	NaN	1	1	Median	0.65934	0.80508	NaN	1	0	Median	1.1714	1.0984	25.1	4	2	Median	1.0157	1.0704	35.749	2	0	Median	331380000	154760000	176630000	15742000	9069500	6672700	39198000	22806000	16392000	157910000	70626000	87288000	118530000	52254000	66273000	9975	1640	9449	61570;61571;61572;61573;61574;61575;61576;61577;61578	83016;83017;83018;83019;83020;83021;83022;83023;83024;83025	83023			9	
DYIAYAHSTIMPR	0	Unmodified	1536.7395	0.73949856	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.84		7						1	9	4	5	4	4	66.508	61.03	2;3	1.5178E-27	32356	160513_QHF_FH_JSI9Kac_6	186.74	151.47			1.0422	1.0748	19.03	16	2	Median	1.623	1.3982	13.05	4	0	Median	0.7914	0.98077	6.6596	5	0	Median	1.0422	1.0301	12.201	4	0	Median	1.1612	1.2894	21.123	3	2	Median	1555500000	801150000	754360000	299680000	135990000	163690000	472180000	270160000	202010000	531400000	265460000	265930000	252260000	129530000	122730000	9976	1409	9450	61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589;61590;61591;61592;61593;61594;61595	83026;83027;83028;83029;83030;83031;83032;83033;83034;83035;83036;83037;83038;83039;83040;83041;83042;83043;83044;83045;83046;83047;83048;83049	83041			24	
DYIAYAHSTIMPR	0	Oxidation (M)	1552.7344	0.73441319	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	0	By MS/MS				15.5	0.5								1	1	2				61.779	51.894	3	0.0039721	27628	160513_QHF_FH_JSI9Kac_6	45.79	40.711			1.4498	1.2253	10.041	2	0	Median	1.4498	1.2253	10.041	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15535000	5756400	9778600	15535000	5756400	9778600	0	0	0	0	0	0	0	0	0	9977	1409	9450	61596;61597	83050	83050		1052	1	
DYIDGVYDNAEYAER	0	Unmodified	1791.7588	0.75877326	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.735	60.09	2	1.6017E-14	54480	160511_QHF_FH_JSI11i_1	156.36	140.5			1.1059	1.0133	15.046	4	1	Median	1.1154	0.92792	NaN	1	1	Median	0.70457	0.81814	NaN	1	0	Median	1.1309	1.1066	NaN	1	0	Median	1.0965	1.1194	NaN	1	0	Median	284950000	132600000	152360000	44871000	20866000	24004000	70222000	39027000	31195000	84307000	35201000	49106000	85554000	37501000	48052000	9978	3173	9451	61598;61599;61600;61601	83051;83052;83053;83054;83055;83056	83051			6	
DYIEEEVIDEK	1	Unmodified	1380.6297	0.62965657	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.727	58.071	2	0.0010402	52791	160511_QHF_FH_JSI12i_1	77.744	67.512			1.1314	1.1676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1314	1.1676	NaN	1	1	Median	41468000	18497000	22970000	0	0	0	0	0	0	0	0	0	41468000	18497000	22970000	9979	2612	9452	61602	83057	83057			1	
DYIHVVDLAK	1	Unmodified	1171.6237	0.62372375	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			62.225	61.366	3	0.002082	54344	160511_QHF_FH_JSI10i_2	58.676	49.244			1.2806	1.5925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2806	1.5925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29861000	12002000	17859000	0	0	0	29861000	12002000	17859000	0	0	0	0	0	0	9980	2533	9453	61603	83058	83058			1	
DYILEGEPGK	1	Unmodified	1119.5448	0.54480473	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		45.795	45.392	2	0.0042503	41024	160511_QHF_FH_JSI11i_1	66.568	52.989			0.41031	0.39128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41031	0.39128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29851000	19516000	10335000	0	0	0	0	0	0	29851000	19516000	10335000	0	0	0	9981	5295	9454	61604	83059	83059			1	
DYIMEPSIFNTLK	1	Unmodified	1569.7749	0.77488102	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		99.488	99.363	2	0.00011077	89950	160511_QHF_FH_JSI10i_1	105.46	98.487			0.86652	0.71821	25.44	3	1	Median	0.86652	0.70128	NaN	1	1	Median	0.63004	0.71821	NaN	1	0	Median	1.1629	1.1021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61390000	31464000	29926000	10750000	5544800	5205600	25487000	13667000	11821000	25153000	12253000	12900000	0	0	0	9982	3440	9455	61605;61606;61607;61608	83060;83061;83062;83063;83064;83065	83063			6	
DYIPGAEVLEVEK	1	Unmodified	1460.7399	0.73987572	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	78.281	77.883	2	0.0027931	70858	160511_QHF_FH_JSI11i_1	64.878	39.219			0.83882	0.79229	26.456	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83882	0.79229	26.666	2	2	Median	1.0416	1.0926	NaN	1	1	Median	69451000	36639000	32811000	0	0	0	0	0	0	48629000	26204000	22424000	20822000	10435000	10387000	9983	5051	9456	61609;61610;61611	83066;83067;83068	83066			3	
DYIPVDQEELR	0	Unmodified	1375.662	0.66195975	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.319	58.663	2	0.00081282	53304	160511_QHF_FH_JSI12i_1	79.974	32.776			0.56729	0.5904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56729	0.5904	NaN	1	1	Median	30598000	19602000	10996000	0	0	0	0	0	0	0	0	0	30598000	19602000	10996000	9984	2517	9457	61612	83069	83069			1	
DYIPVDQEELRDYVK	1	Unmodified	1880.9156	0.91560825	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	3	1	74.526	73.913	2;3	0.00018528	67269	160511_QHF_FH_JSI11i_1	71.692	61.411			0.9386	0.93646	73.712	7	2	Median	1.1247	0.93863	0.32615	2	0	Median	0.87884	1.0574	NaN	1	0	Median	0.9386	0.92285	82.605	3	1	Median	0.19367	0.20006	NaN	1	1	Median	584020000	339150000	244870000	128050000	60834000	67213000	56659000	32732000	23927000	325690000	190810000	134870000	73630000	54773000	18856000	9985	2517	9458	61613;61614;61615;61616;61617;61618;61619	83070;83071;83072;83073	83070			4	
DYIQSTMETEK	1	Unmodified	1343.5915	0.59149692	4233	Q96S44	TP53RK	TP53-regulating kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	40.413	39.783	2	3.1396E-05	36028	160511_QHF_FH_JSI12i_1	104.79	94.563			0.86154	0.71777	61.039	5	4	Median	0.86154	0.71777	NaN	1	1	Median	0.88898	1.0351	NaN	1	1	Median	0.67302	0.65823	NaN	1	1	Median	0.70126	0.73195	116.97	2	1	Median	201790000	106000000	95786000	23064000	10111000	12952000	50705000	29749000	20956000	57295000	32098000	25196000	70725000	34045000	36680000	9986	4233	9459	61620;61621;61622;61623;61624	83074;83075;83076;83077;83078;83079	83076			6	
DYIVALQHPVTTDIK	1	Unmodified	1711.9145	0.91448604	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			68.742	68.458	3	0.0034901	62043	160511_QHF_FH_JSI10i_1	51.771	33.175			0.60342	0.70613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60342	0.70613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38012000	23207000	14805000	0	0	0	38012000	23207000	14805000	0	0	0	0	0	0	9987	5485	9460	61625	83080	83080			1	
DYIVVGSDSGR	0	Unmodified	1166.5568	0.5567664	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	44.711	40.372	2	1.4725E-07	36096	160511_QHF_FH_JSI9i_1	123.86	100.1			0.83797	0.87172	19.525	7	2	Median	0.83797	0.6701	NaN	1	0	Median	0.9247	1.0856	20.025	2	1	Median	0.95505	0.92383	16.779	2	1	Median	0.80628	0.86949	0.36199	2	0	Median	1195000000	562660000	632370000	245630000	117790000	127840000	366400000	159210000	207190000	293710000	138210000	155500000	289280000	147450000	141840000	9988	2665	9461	61626;61627;61628;61629;61630;61631;61632	83081;83082;83083;83084;83085;83086;83087;83088	83086			8	
DYKAEEDPAK	2	Acetyl (K)	1206.5404	0.54044763	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	1	0	0	1			By MS/MS		12	0					1							1		31.427	22.955	2	0.011732	10667	160513_QHF_FH_JSI11Kac_2	65.347	51.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1418500	1418500	0	0	0	0	0	0	0	1418500	1418500	0	0	0	0	9989	2145	9462	61633	83089	83089	2242;2243		1	
DYKTMAALAK	2	Acetyl (K)	1152.5849	0.5848954	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		67.405	57.815	2	0.010321	29646	160513_QHF_FH_JSI11Kac_3	67.563	39.164			0.80057	0.77798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80057	0.77798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1387000	1047700	339310	0	0	0	0	0	0	1387000	1047700	339310	0	0	0	9990	977	9463	61634	83090	83090	747		1	
DYLALNEDLR	0	Unmodified	1220.6037	0.60371659	1124	P17693	HLA-G	HLA class I histocompatibility antigen, alpha chain G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	2	1	2	64.557	61.925	2	7.9958E-08	56450	160511_QHF_FH_JSI11i_1	123.35	0			0.85945	0.89611	12.112	5	1	Median	1.109	0.91859	NaN	1	0	Median	0.71299	0.83914	9.2904	2	1	Median	0.85945	0.84753	NaN	1	0	Median	1.0214	1.0887	NaN	1	0	Median	908670000	485050000	423620000	167160000	66776000	100380000	252900000	153780000	99124000	232950000	126360000	106590000	255660000	138140000	117530000	9991	1124	9464	61635;61636;61637;61638;61639;61640	83091;83092;83093;83094;83095;83096;83097;83098	83092			8	
DYLEHITSIGPR	0	Unmodified	1399.7096	0.70957864	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	61.024	60.098	2	9.1184E-05	52865	160511_QHF_FH_JSI9i_2	104.52	92.476			1.1594	1.0829	19.264	5	5	Median	1.3227	1.1207	17.825	2	2	Median	0.74095	0.90865	NaN	1	1	Median	1.4677	1.4646	NaN	1	1	Median	1.0111	1.0829	NaN	1	1	Median	228840000	109880000	118960000	79358000	39414000	39945000	45407000	27679000	17728000	63626000	24472000	39154000	40450000	18318000	22132000	9992	3248	9465	61641;61642;61643;61644;61645	83099;83100;83101;83102;83103	83101			5	
DYLETLMASQK	1	Unmodified	1297.6224	0.62240312	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	72.674	71.921	2	0.0020479	63925	160511_QHF_FH_JSI9i_1	73.887	59.246			2.2394	2.0113	57.429	2	2	Median	1.6422	1.3401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0539	3.0189	NaN	1	1	Median	67680000	25229000	42451000	52470000	20446000	32024000	0	0	0	0	0	0	15210000	4782600	10427000	9993	4083	9466	61646;61647	83104;83105	83105			2	
DYLHLPPEIVPATLR	0	Unmodified	1732.9512	0.9512059	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.547	1	13	7							6	5	5	5	95.048	94.578	2;3	5.1116E-06	83781	160511_QHF_FH_JSI11i_2	68.173	56.028			0.95645	1.0286	12.274	15	3	Median	1.2561	1.0513	12.462	5	1	Median	0.78919	0.92896	6.3871	3	0	Median	0.95645	0.97973	3.6182	3	0	Plateau	0.91414	1.0311	17.26	4	2	Median	1745200000	908400000	836790000	302760000	142060000	160710000	332810000	184310000	148500000	515000000	259840000	255160000	594610000	322190000	272420000	9994	1595	9467	61648;61649;61650;61651;61652;61653;61654;61655;61656;61657;61658;61659;61660;61661;61662;61663;61664;61665;61666;61667;61668	83106;83107;83108;83109;83110;83111;83112;83113;83114;83115;83116;83117;83118;83119;83120;83121;83122;83123;83124;83125;83126;83127;83128;83129;83130;83131;83132;83133;83134;83135;83136;83137;83138;83139;83140;83141;83142;83143;83144;83145;83146;83147;83148;83149;83150;83151;83152;83153;83154;83155;83156;83157;83158;83159;83160;83161	83147			56	
DYLHLPPEIVPATLRR	0	Unmodified	1889.0523	0.052316927	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.464		11	24							12	11	10	2	84.965	84.251	3;4	3.4881E-06	73986	160511_QHF_FH_JSI9i_2	118.33	108.19			1.0498	1.0527	18.437	30	11	Median	1.484	1.1907	15.402	11	4	Median	0.92319	1.0064	11.236	8	2	Linear	0.98974	0.96726	12.375	9	4	Median	0.88714	0.92595	26.532	2	1	Median	1897000000	890740000	1006200000	793440000	314490000	478950000	746910000	399930000	346980000	309890000	153830000	156060000	46733000	22489000	24244000	9995	1595	9468	61669;61670;61671;61672;61673;61674;61675;61676;61677;61678;61679;61680;61681;61682;61683;61684;61685;61686;61687;61688;61689;61690;61691;61692;61693;61694;61695;61696;61697;61698;61699;61700;61701;61702;61703	83162;83163;83164;83165;83166;83167;83168;83169;83170;83171;83172;83173;83174;83175;83176;83177;83178;83179;83180;83181;83182;83183;83184;83185;83186;83187;83188;83189;83190;83191;83192;83193;83194;83195;83196;83197;83198;83199;83200;83201;83202;83203;83204;83205;83206;83207;83208;83209;83210;83211;83212;83213;83214;83215;83216;83217;83218;83219;83220;83221;83222;83223;83224;83225;83226	83205			64	
DYLHYHIK	1	Unmodified	1087.5451	0.5450795	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	43.167	35.74	3	0.0034796	30858	160511_QHF_FH_JSI11i_3	52.937	40.36			1.2574	1.0966	20.389	5	1	Median	1.2763	1.0966	NaN	1	0	Median	0.71632	0.83044	NaN	1	0	Median	1.2574	1.2692	NaN	1	1	Median	1.0217	1.0829	26.879	2	0	Median	109840000	49076000	60765000	12412000	5671200	6741300	11992000	6913700	5077800	7514500	3831700	3682900	77922000	32659000	45263000	9996	256	9469	61704;61705;61706;61707;61708;61709	83227;83228;83229;83230;83231;83232;83233	83227			7	
DYLHYIR	0	Unmodified	978.49232	0.49231565	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.49		9	6					2	7	6	6	6	6	51.353	47.342	2;3	0.0013952	42265	160511_QHF_FH_JSI10i_2	78.616	50.509			0.86544	0.97181	20.638	22	0	Median	1.2672	1.0411	21.509	5	0	Median	0.81824	0.91573	23.258	5	0	Median	0.8543	0.86575	15.822	6	0	Median	0.88203	0.97181	11.065	6	0	Median	5595200000	2490900000	3104300000	990660000	390980000	599680000	1133200000	528960000	604190000	2335100000	986270000	1348900000	1136200000	584680000	551550000	9997	1996	9470	61710;61711;61712;61713;61714;61715;61716;61717;61718;61719;61720;61721;61722;61723;61724;61725;61726;61727;61728;61729;61730;61731;61732;61733	83234;83235;83236;83237;83238;83239;83240;83241;83242;83243;83244;83245;83246;83247;83248;83249;83250;83251;83252;83253;83254;83255;83256;83257;83258;83259;83260;83261;83262;83263;83264;83265;83266;83267;83268;83269;83270;83271;83272;83273;83274;83275	83264			42	
DYLHYIRK	1	Unmodified	1106.5873	0.58727866	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.91		1	14						6	6	8	3	4	44.045	40.153	2;3	6.8179E-05	32819	160511_QHF_FH_JSI9i_3	113.7	104.83			1.0374	1.0884	23.203	17	1	Median	1.3329	1.0542	14.871	4	0	Median	0.98278	1.1541	15.395	6	0	Median	1.1375	1.0812	13.245	3	0	Median	0.90593	0.93774	44.905	4	1	Median	6853800000	3167300000	3686400000	2211800000	942020000	1269800000	1412000000	613120000	798850000	2031100000	943180000	1087900000	1198900000	669020000	529900000	9998	1996	9471	61734;61735;61736;61737;61738;61739;61740;61741;61742;61743;61744;61745;61746;61747;61748;61749;61750;61751;61752;61753;61754	83276;83277;83278;83279;83280;83281;83282;83283;83284;83285;83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298;83299;83300;83301;83302;83303;83304;83305;83306;83307;83308;83309;83310;83311;83312;83313;83314;83315;83316;83317;83318;83319;83320;83321;83322;83323;83324	83305			49	
DYLIDGSR	0	Unmodified	937.45051	0.45051041	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	38.697	36.347	2	0.0017787	32847	160511_QHF_FH_JSI11i_1	85.064	18.382			1.0555	1.0234	16.34	5	0	Median	1.4173	1.1726	NaN	1	0	Median	0.71835	0.85894	NaN	1	0	Median	1.1771	1.129	13.885	2	0	Median	0.83435	0.89129	NaN	1	0	Median	968430000	531990000	436440000	196100000	104710000	91386000	223350000	136870000	86487000	289610000	139530000	150080000	259370000	150880000	108490000	9999	1139	9472	61755;61756;61757;61758;61759	83325;83326;83327;83328;83329;83330;83331;83332;83333	83326			9	
DYLLMEEEFIR	0	Unmodified	1456.6908	0.69081704	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	99.03	98.857	2	3.3003E-06	86829	160511_QHF_FH_JSI11i_2	110.14	61.496			2.0482	2.0989	24.721	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.0666	1.3288	NaN	1	1	Median	2.162	2.1278	NaN	1	1	Median	1.724	1.9163	NaN	1	1	Median	150710000	64860000	85850000	0	0	0	30047000	16037000	14010000	65251000	26361000	38890000	55412000	22461000	32951000	10000	1983	9473	61760;61761;61762;61763;61764	83334;83335;83336;83337;83338	83337			5	
DYLQLLR	0	Unmodified	919.51272	0.51271674	89	L0R6Q1	SLC35A4		yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	74.586	73.641	2	0.0082634	65187	160511_QHF_FH_JSI9i_2	73.039	13.834			0.71032	0.71928	73.41	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2296	1.2087	NaN	1	1	Median	0.41033	0.42801	NaN	1	1	Median	19672000	11564000	8107800	0	0	0	0	0	0	12812000	7153400	5659100	6859400	4410700	2448700	10001	89	9474	61765;61766;61767	83339;83340;83341	83340			3	
DYMKSIK	2	Acetyl (K)	925.4579	0.45790397	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						2	2				2	2		47.638	37.799	2	0.02406	21033	160513_QHF_FH_JSI10Kac_4	74.127	50.155			0.61704	0.67049	61.519	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9044	1.0772	13.804	2	0	Median	0.39315	0.38582	24.903	2	0	Median	NaN	NaN	NaN	0	0	Median	80233000	51261000	28972000	0	0	0	29885000	17260000	12625000	50347000	34001000	16346000	0	0	0	10002	1036	9475	61768;61769;61770;61771	83342;83343;83344;83345;83346	83342	864		5	
DYMKSIK	2	Acetyl (K);Oxidation (M)	941.45282	0.4528186	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	1	0	1	1		By MS/MS	By MS/MS		13	0						2					1	1		32.334	23.735	2	0.048321	14240	160513_QHF_FH_JSI11Kac_3	47.082	38.928			0.74416	0.80709	53.845	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99465	1.1811	NaN	1	0	Median	0.55675	0.55152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38289000	26470000	11819000	0	0	0	13753000	7368700	6384300	24536000	19101000	5434700	0	0	0	10003	1036	9475	61772;61773	83347	83347	864		1	
DYMLFRK	1	Unmodified	971.48987	0.48987281	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	48.167	47.927	3	0.0062531	41061	160511_QHF_FH_JSI12i_3	52.683	43.725			1.6122	1.6359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6122	1.6359	NaN	1	1	Median	34337000	10396000	23941000	0	0	0	0	0	0	0	0	0	34337000	10396000	23941000	10004	5107	9476	61774;61775;61776	83348;83349;83350	83350			3	
DYNEAYNYYTK	1	Unmodified	1442.599	0.59902514	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.713	45.061	2	0.00011015	41048	160511_QHF_FH_JSI12i_1	138.22	116.76			0.34748	0.36257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34748	0.36257	NaN	1	1	Median	165570000	105070000	60502000	0	0	0	0	0	0	0	0	0	165570000	105070000	60502000	10005	4294	9477	61777	83351	83351			1	
DYNHWLATK	1	Unmodified	1146.5458	0.54580778	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	43.821	42.909	2;3	2.9384E-05	37576	160511_QHF_FH_JSI9i_2	83.397	72.639			0.88974	1.0683	14.669	7	0	Median	1.4749	1.232	2.7532	2	0	Median	0.82225	1.0058	8.5203	2	0	Median	1.0778	1.0947	26.646	2	0	Median	0.88974	1.0018	NaN	1	0	Median	1058600000	493860000	564760000	143210000	59369000	83846000	298080000	127980000	170090000	486790000	254960000	231830000	130540000	51545000	78992000	10006	1372	9478	61778;61779;61780;61781;61782;61783;61784	83352;83353;83354;83355;83356;83357;83358;83359;83360	83354			7	
DYNNSYYGLMLFGHPLLVSVPR	0	Unmodified	2554.2679	0.26786537	1751	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	96.136	87.948	2;3	4.6678E-85	49328	160513_QHF_FH_JSI11Kac_6	214.19	203.25			1.0695	1.1994	13.109	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0017	1.1763	NaN	1	0	Median	0.99375	0.94711	NaN	1	0	Median	1.1419	1.1994	NaN	1	0	Median	448820000	220160000	228660000	0	0	0	171840000	98364000	73480000	50707000	25256000	25451000	226270000	96543000	129720000	10007	1751	9479	61785;61786;61787	83361;83362;83363	83361			2	
DYNPYPYSDAINTYDK	1	Unmodified	1937.8319	0.8319382	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.469	66.792	2	4.8658E-05	60834	160511_QHF_FH_JSI12i_1	106.49	88.224			1.0187	0.91242	17.025	3	3	Plateau	0.99816	0.81625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0507	1.0199	NaN	1	1	Median	1.1481	1.1404	NaN	1	1	Median	47297000	24765000	22532000	15808000	5883900	9923900	0	0	0	15608000	9855400	5752200	15882000	9025800	6856200	10008	3266	9480	61788;61789;61790;61791	83364;83365;83366;83367	83365			4	
DYNVTANSK	1	Unmodified	1010.4669	0.46688876	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.19	7	3	7		3	5	1			5	7	7	7	18.889	15.569	2	1.1417E-16	5575	160513_QHF_FH_JSI9Kac_3	169.44	146.95			0.89202	0.98534	150.42	26	17	Median	0.87342	0.77157	117.74	5	3	Median	0.83137	0.96546	102.97	7	6	Median	1.5666	1.4619	178.51	7	5	Median	0.83679	0.89263	189.35	7	3	Median	24913000000	11703000000	13210000000	6648700000	2746800000	3901900000	7808800000	4835500000	2973300000	4373800000	1767800000	2606000000	6081600000	2352500000	3729200000	10009	761	9481	61792;61793;61794;61795;61796;61797;61798;61799;61800;61801;61802;61803;61804;61805;61806;61807;61808;61809;61810;61811;61812;61813;61814;61815;61816;61817	83368;83369;83370;83371;83372;83373;83374;83375;83376;83377;83378;83379;83380;83381;83382;83383;83384;83385;83386;83387;83388;83389;83390;83391;83392;83393;83394;83395;83396;83397;83398;83399	83383			32	
DYPAHTEEDK	1	Unmodified	1203.5044	0.50439647	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		10.107	9.7237	2	1.104E-05	7363	160511_QHF_FH_JSI10i_1	105.4	85.619			1.3728	1.1396	22.629	3	2	Plateau	1.3728	1.1396	NaN	1	0	Median	1.243	1.4572	NaN	1	1	Median	1.9202	1.7908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	219990000	104010000	115970000	57261000	29867000	27393000	92972000	41432000	51540000	69754000	32712000	37041000	0	0	0	10010	4024	9482	61818;61819;61820;61821	83400;83401;83402;83403	83402			4	
DYPDFSPSVDAEAIQK	1	Unmodified	1780.8156	0.81555986	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	71.074	70.541	2;3	5.6884E-30	64119	160511_QHF_FH_JSI11i_1	188.29	150.27			0.89553	0.85845	24.957	8	2	Median	0.93665	0.76398	14.65	2	0	Median	0.61509	0.72148	17.779	2	1	Median	0.99555	0.95246	6.641	2	0	Median	1.0924	1.1217	35.986	2	1	Median	829550000	439160000	390400000	162380000	84573000	77809000	199670000	120410000	79259000	230720000	125450000	105260000	236790000	108720000	128070000	10011	1018	9483	61822;61823;61824;61825;61826;61827;61828;61829	83404;83405;83406;83407;83408;83409;83410;83411;83412;83413;83414;83415;83416;83417;83418;83419	83406			16	
DYPFHEEF	0	Unmodified	1082.4345	0.434526	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	66.624	63.896	2	2.4026E-05	58404	160511_QHF_FH_JSI12i_1	138.85	138.85			0.85594	0.94195	12.786	10	0	Median	1.3564	1.1505	11.598	2	0	Median	0.85205	1.0098	8.1325	3	0	Median	0.92459	0.90261	11.545	2	0	Median	0.81865	0.88613	4.326	3	0	Median	2291000000	1193900000	1097000000	466850000	206730000	260120000	514440000	279240000	235200000	532760000	290790000	241970000	776920000	417170000	359740000	10012	1067	9484	61830;61831;61832;61833;61834;61835;61836;61837;61838;61839	83420;83421;83422;83423;83424;83425;83426;83427;83428;83429;83430;83431;83432;83433;83434;83435;83436	83425			17	
DYPIYLLK	1	Unmodified	1023.5641	0.56408361	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		79.724	79.384	2	0.040862	72215	160511_QHF_FH_JSI11i_1	47.849	21.246			3.2381	3.1166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2381	3.1166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7471200	2053400	5417800	0	0	0	0	0	0	7471200	2053400	5417800	0	0	0	10013	4135	9485	61840	83437	83437			1	
DYPLIPVGK	1	Unmodified	1000.5593	0.55933258	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	2	3	2	70.287	65.655	2	0.00072092	60198	160511_QHF_FH_JSI11i_1	85.064	75.476			0.97008	0.95387	30.121	7	1	Median	1.1153	0.902	NaN	1	0	Median	0.79645	0.93872	NaN	1	0	Median	0.97267	0.95387	50.143	3	1	Median	0.95724	1.0094	5.2632	2	0	Median	678920000	326630000	352290000	180510000	77156000	103360000	145230000	77026000	68205000	178540000	85065000	93471000	174640000	87384000	87257000	10014	800	9486	61841;61842;61843;61844;61845;61846;61847;61848	83438;83439;83440;83441;83442;83443;83444;83445;83446;83447;83448;83449;83450;83451;83452;83453	83439			16	
DYPLRPPK	1	Unmodified	984.53927	0.53926584	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	30.811	30.811	3	0.0054751	25963	160511_QHF_FH_JSI12i_3	50.127	33.924			0.99754	0.95034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99754	0.95034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80577000	38172000	42406000	0	0	0	0	0	0	80577000	38172000	42406000	0	0	0	10015	1988	9487	61849;61850	83454;83455	83455			2	
DYPQLVLPNFDMLYNHVK	1	Unmodified	2205.0929	0.092861113	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	101.52	101.39	3	5.0631E-06	87252	160511_QHF_FH_JSI12i_2	89.846	76.905			0.71825	0.86148	10.353	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71825	0.86148	NaN	1	1	Median	0.97324	0.96489	NaN	1	0	Median	0.7104	0.78468	NaN	1	0	Median	576130000	332880000	243250000	0	0	0	150330000	97882000	52447000	206110000	108710000	97398000	219690000	126290000	93404000	10016	4831	9488	61851;61852;61853	83456;83457;83458	83456			3	
DYPVVSIEDPFDQDDWGAWQK	1	Unmodified	2509.1074	0.10738478	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.609	138	76	14							7	99	52	70	109.95	109.86	2;3	2.2027E-12	100373	160511_QHF_FH_JSI10i_1	104.03	100.29			0.97948	1.0362	20.785	181	59	Median	1.1924	1.1032	27.005	5	0	Median	0.92188	1.0466	22.125	77	24	Median	1.0898	1.0514	18.055	46	17	Median	0.98393	0.98965	20.098	53	18	Median	1511200000	776620000	734540000	16109000	5772500	10336000	712270000	375320000	336950000	317120000	152900000	164220000	465660000	242630000	223030000	10017	854	9489	61854;61855;61856;61857;61858;61859;61860;61861;61862;61863;61864;61865;61866;61867;61868;61869;61870;61871;61872;61873;61874;61875;61876;61877;61878;61879;61880;61881;61882;61883;61884;61885;61886;61887;61888;61889;61890;61891;61892;61893;61894;61895;61896;61897;61898;61899;61900;61901;61902;61903;61904;61905;61906;61907;61908;61909;61910;61911;61912;61913;61914;61915;61916;61917;61918;61919;61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930;61931;61932;61933;61934;61935;61936;61937;61938;61939;61940;61941;61942;61943;61944;61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955;61956;61957;61958;61959;61960;61961;61962;61963;61964;61965;61966;61967;61968;61969;61970;61971;61972;61973;61974;61975;61976;61977;61978;61979;61980;61981;61982;61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996;61997;61998;61999;62000;62001;62002;62003;62004;62005;62006;62007;62008;62009;62010;62011;62012;62013;62014;62015;62016;62017;62018;62019;62020;62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045;62046;62047;62048;62049;62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068;62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081	83459;83460;83461;83462;83463;83464;83465;83466;83467;83468;83469;83470;83471;83472;83473;83474;83475;83476;83477;83478;83479;83480;83481;83482;83483;83484;83485;83486;83487;83488;83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500;83501;83502;83503;83504;83505;83506;83507;83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523;83524;83525;83526;83527;83528;83529;83530;83531;83532;83533;83534;83535;83536;83537;83538;83539;83540;83541;83542;83543;83544;83545;83546;83547;83548;83549;83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561;83562;83563;83564;83565;83566;83567;83568;83569;83570;83571;83572;83573;83574;83575;83576;83577;83578;83579;83580;83581;83582;83583;83584;83585;83586;83587;83588;83589;83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609;83610;83611;83612;83613;83614;83615;83616;83617;83618;83619;83620;83621;83622;83623;83624;83625;83626;83627;83628;83629;83630;83631;83632;83633;83634;83635;83636;83637;83638;83639;83640;83641;83642;83643;83644;83645;83646;83647;83648;83649;83650;83651;83652;83653;83654;83655;83656;83657;83658;83659;83660;83661;83662;83663;83664;83665;83666;83667;83668;83669;83670;83671;83672;83673;83674;83675;83676;83677;83678;83679;83680;83681;83682;83683;83684;83685;83686;83687;83688;83689;83690;83691;83692	83633			224	
DYQDNKADVILK	2	Unmodified	1420.7198	0.71980898	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	1			By MS/MS		1	0	1											1		39.536	39.233	3	0.046256	35367	160511_QHF_FH_JSI11i_1	32.61	23.91			2.2205	2.1177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2205	2.1177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46829000	17455000	29374000	0	0	0	0	0	0	46829000	17455000	29374000	0	0	0	10018	1608	9490	62082	83693	83693			1	
DYQDVRNEIPEEALYK	1	Unmodified	1980.9429	0.94288564	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	65.295	64.819	3	0.00074775	59075	160511_QHF_FH_JSI12i_1	56.215	40.449			0.93736	0.97132	19.368	3	0	Median	NaN	NaN	NaN	0	0	Median	0.61668	0.71999	NaN	1	0	Median	1.0594	1.0346	NaN	1	0	Median	0.93736	0.97132	NaN	1	0	Median	164880000	82736000	82145000	0	0	0	56871000	34004000	22866000	54382000	20048000	34334000	53628000	28683000	24945000	10019	1168	9491	62083;62084;62085	83694;83695	83695			1	
DYQGPLK	1	Unmodified	819.41267	0.41266834	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.12	7					3	2			2	3	4	3	26.765	23.277	2	0.0072961	13775	160513_QHF_FH_JSI12Kac_4	73.039	56.112			1.031	1.0179	56.105	11	6	Median	1.5201	1.2515	116.48	2	2	Median	1.1158	1.2908	55.429	3	2	Median	1.0028	0.98394	54.163	4	2	Median	0.82464	0.8705	32.034	2	0	Median	2939700000	1380900000	1558800000	752520000	255340000	497180000	783390000	418400000	364990000	787140000	409810000	377320000	616690000	297390000	319300000	10020	1798	9492	62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097	83696;83697;83698;83699;83700;83701;83702;83703;83704;83705;83706;83707;83708;83709	83709			14	
DYQNVPGIEK	1	Unmodified	1161.5666	0.5666028	2111	P82914	MRPS15	28S ribosomal protein S15, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	41.126	40.385	2	1.6938E-09	36563	160511_QHF_FH_JSI12i_1	132.88	122.17			1.1049	0.81069	24.928	3	1	Plateau	1.3206	1.089	NaN	1	0	Median	1.1049	1.2684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73864	0.77912	NaN	1	0	Median	352180000	193980000	158200000	93666000	39944000	53722000	116980000	59250000	57730000	0	0	0	141540000	94785000	46752000	10021	2111	9493	62098;62099;62100	83710;83711;83712;83713;83714	83710			5	
DYQPGITYIVVQK	1	Unmodified	1522.8031	0.80314468	5387	Q9UL18	AGO1	Protein argonaute-1	no	no	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	45.89	45.769	4	0.029828	40449	160511_QHF_FH_JSI11i_3	20.663	1.2688			0.86372	0.84396	29.752	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71395	0.68384	NaN	1	0	Median	1.0449	1.0416	NaN	1	0	Median	84198000	49492000	34705000	0	0	0	0	0	0	30377000	18548000	11829000	53820000	30944000	22877000	10022	5387	9494	62101;62102	83715	83715			1	
DYQPLLWIFQQLFR	0	Unmodified	1865.9828	0.98284038	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.81	99.092	2;3	3.3953E-46	58671	160513_QHF_FH_JSI10Kac_6	202.03	182.27			0.65174	0.76269	11.995	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65174	0.76269	11.995	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	275250000	143650000	131600000	0	0	0	275250000	143650000	131600000	0	0	0	0	0	0	10023	3460	9495	62103;62104	83716;83717;83718	83718			3	
DYSAPVNFISAGLK	1	Unmodified	1480.7562	0.75619449	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	91.133	90.633	2	0.00022524	82382	160511_QHF_FH_JSI11i_1	87.363	69.051			0.96116	0.87451	22.378	4	2	Median	1.0001	0.81528	29.737	2	2	Median	0.65501	0.76016	NaN	1	0	Median	1.1154	1.0532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	100910000	52338000	48568000	48342000	24045000	24297000	27574000	15585000	11988000	24990000	12707000	12283000	0	0	0	10024	5229	9496	62105;62106;62107;62108;62109	83719;83720;83721;83722;83723;83724;83725	83719			7	
DYSASINSLLER	0	Unmodified	1366.6729	0.67285879	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	77.669	77.087	2	0.0001681	68587	160511_QHF_FH_JSI9i_1	81.335	69.051			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10025	3811	9497	62110;62111;62112	83726;83727;83728	83728			3	
DYSEADGLSER	0	Unmodified	1240.5208	0.52077482	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	30.988	30.537	2	0.00041205	27262	160511_QHF_FH_JSI10i_1	71.221	62.358			0.87453	0.98184	24.471	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9826	1.1673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77835	0.82583	NaN	1	0	Median	102470000	58946000	43521000	0	0	0	59602000	33012000	26590000	0	0	0	42865000	25934000	16931000	10026	4719	9498	62113;62114	83729;83730;83731;83732	83730			3	
DYSGQGVVK	1	Unmodified	951.46616	0.46616048	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	23.237	20.291	2	1.8768E-06	17360	160511_QHF_FH_JSI9i_1	129.47	83.115			1.1684	0.98233	15.881	6	0	Linear	1.1811	0.97248	NaN	1	0	Median	0.76725	0.89556	14.503	2	0	Median	1.0726	1.0462	16.95	2	0	Median	1.1569	1.2442	NaN	1	0	Median	1757000000	895680000	861310000	466750000	223030000	243720000	382500000	207430000	175070000	523250000	264370000	258880000	384490000	200850000	183640000	10027	472	9499	62115;62116;62117;62118;62119;62120	83733;83734;83735;83736;83737;83738;83739	83739			7	
DYSGYQR	0	Unmodified	887.37735	0.37734547	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.6	5.2	4						1			1	1	2	1	14.647	12.772	2	0.0012382	11032	160511_QHF_FH_JSI10i_1	122.98	90.865			1.1223	1.1756	18.876	5	0	Median	1.4112	1.1402	NaN	1	0	Median	1.0021	1.1766	NaN	1	0	Median	0.97398	0.95205	29.825	2	0	Median	1.1223	1.2022	NaN	1	0	Median	1167300000	568790000	598480000	232770000	108100000	124670000	357560000	183580000	173990000	299770000	135580000	164190000	277160000	141530000	135640000	10028	2536	9500	62121;62122;62123;62124;62125	83740;83741;83742;83743;83744;83745	83742			6	
DYSKGFGGK	2	Acetyl (K)	999.46616	0.46616048	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	40.938	32.031	2	0.021891	17578	160513_QHF_FH_JSI10Kac_3	52.482	43.709			0.70858	0.77293	58.275	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9874	1.1671	NaN	1	0	Median	0.5085	0.5119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10636000	5621600	5014800	0	0	0	3837000	2022200	1814800	5575000	3599400	1975600	1224400	0	1224400	10029	2522	9501	62126;62127;62128	83746;83747;83748	83748	2517;2518		3	
DYSKYYK	2	Acetyl (K)	1007.46	0.46001246	56	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	1	0	0	1		By MS/MS			13	0						1					1			45.935	36.765	2	0.016615	19789	160513_QHF_FH_JSI10Kac_3	81.297	61.51		+	0.8846	1.0349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8846	1.0349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4683300	2679300	2004000	0	0	0	4683300	2679300	2004000	0	0	0	0	0	0	10030	56	9502	62129	83749	83749	37		1	
DYSLDEFEANK	1	Unmodified	1329.5725	0.57247604	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		1	2	60.923	60.199	2	1.2671E-13	54520	160511_QHF_FH_JSI11i_1	153.24	125.99			1.0761	1.0639	5.1511	3	0	Plateau	1.4391	1.1784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0761	1.0631	NaN	1	0	Median	1.092	1.1228	NaN	1	0	Median	339640000	160090000	179550000	92039000	49660000	42379000	0	0	0	136070000	56070000	79995000	111540000	54360000	57177000	10031	5161	9503	62130;62131;62132;62133	83750;83751;83752;83753;83754	83750			5	
DYSNDWSPSDTVR	0	Unmodified	1540.643	0.64301522	4807	Q9H9C1	VIPAS39	Spermatogenesis-defective protein 39 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	18.325	17.906	2;3	0.021479	15033	160511_QHF_FH_JSI9i_1	25.014	23.181			1.272	1.2578	127.56	5	1	Median	1.5201	1.272	NaN	1	0	Median	17.714	20.654	NaN	1	1	Median	1.2076	1.1894	7.9043	2	0	Median	1.0603	1.1345	NaN	1	0	Median	1543400000	612660000	930720000	343440000	136190000	207250000	244640000	13144000	231490000	589370000	289860000	299510000	365920000	173460000	192460000	10032	4807	9504	62134;62135;62136;62137;62138	83755;83756;83757	83757			3	
DYSQYYR	0	Unmodified	993.41921	0.41921028	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.652	33.049	2	0.0099743	29185	160511_QHF_FH_JSI9i_1	76.833	57.13		+	0.95793	0.89314	16.183	4	0	Median	0.95012	0.77561	NaN	1	0	Median	0.69078	0.8015	NaN	1	0	Median	1.0952	1.0792	NaN	1	0	Median	0.9658	0.99526	NaN	1	0	Median	468120000	226110000	242010000	81211000	40342000	40870000	150570000	84042000	66528000	137010000	59604000	77407000	99331000	42121000	57210000	10033	65	9505	62139;62140;62141;62142	83758;83759;83760;83761;83762	83762			5	
DYSSGFGGK	1	Unmodified	916.39266	0.39266118	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	28.763	22.912	2	0.01301	20861	160511_QHF_FH_JSI12i_1	56.81	47.57			0.55953	0.66009	101.43	3	2	Median	NaN	NaN	NaN	0	0	Median	0.55953	0.66009	NaN	1	1	Median	0.35406	0.36157	NaN	1	0	Median	2.4759	2.6153	NaN	1	1	Median	222140000	111200000	110940000	0	0	0	3703700	1922000	1781700	6029500	4185500	1844000	212410000	105090000	107310000	10034	2522	9506	62143;62144;62145	83763;83764;83765	83763			3	
DYSVTANSK	1	Unmodified	983.45599	0.45598972	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.47	8	5	4	1	3	4	1		1	5	7	6	9	18.994	16.106	2	1.607E-23	9973	160513_QHF_FH_JSI11Kac_3	175.44	150.52			1.1299	1.1201	63.395	26	18	Median	1.8371	1.5254	82.367	4	3	Median	0.98842	1.1229	58.737	7	4	Median	1.3443	1.3349	73.215	6	4	Median	1.0214	1.1174	63.231	9	7	Median	41042000000	18977000000	22065000000	8289000000	3642000000	4647000000	10193000000	5322200000	4870700000	9537900000	4189000000	5348900000	13022000000	5824100000	7198000000	10035	864	9507	62146;62147;62148;62149;62150;62151;62152;62153;62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172	83766;83767;83768;83769;83770;83771;83772;83773;83774;83775;83776;83777;83778;83779;83780;83781;83782;83783;83784;83785;83786;83787;83788;83789;83790;83791;83792;83793;83794;83795;83796;83797;83798;83799;83800;83801;83802;83803	83779			38	
DYTGALAVFTR	0	Unmodified	1212.6139	0.61388734	1238	P23610	F8A1	Factor VIII intron 22 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.2	0.433								3	1	1	2	1		82.582	73.302	2	2.0385E-05	38761	160513_QHF_FH_JSI11Kac_5	102.52	72.714			1.0316	1.1224	10.042	4	0	Median	1.5248	1.2637	NaN	1	0	Median	0.97139	1.1224	7.3973	2	0	Median	1.0412	1.0117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60631000	29353000	31278000	1221100	473700	747350	56053000	27209000	28844000	3357100	1670300	1686800	0	0	0	10036	1238	9508	62173;62174;62175;62176	83804;83805;83806;83807	83806			4	
DYTKAMDVYQK	2	Acetyl (K);Oxidation (M)	1418.6388	0.63878147	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		49.756	40.299	2	6.7813E-08	22198	160513_QHF_FH_JSI11Kac_3	118.4	80.11			0.30402	0.29214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30402	0.29214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4380000	3526800	853230	0	0	0	0	0	0	4380000	3526800	853230	0	0	0	10037	1386	9509	62177	83808	83808	1332	1031	1	
DYTKAMDVYQK	2	Acetyl (K)	1402.6439	0.64386684	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	2	1	64.727	55.283	2	4.1095E-11	28626	160513_QHF_FH_JSI11Kac_3	136.63	96.633			0.11546	0.12056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11546	0.12056	NaN	1	1	Median	7348100	6122600	1225500	0	0	0	2389500	1242900	1146600	3894600	3894600	0	1064100	985180	78947	10038	1386	9509	62178;62179;62180;62181;62182	83809;83810;83811;83812;83813	83809	1332		5	
DYTKVDR	1	Acetyl (K)	937.45051	0.45051041	1370	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	1	0	0	1			By MS/MS		13	0						1						1		28.382	20.5	2	0.045402	12408	160513_QHF_FH_JSI11Kac_3	67.169	22.477			0.087503	0.086128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.087503	0.086128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16218000	15089000	1128800	0	0	0	0	0	0	16218000	15089000	1128800	0	0	0	10039	1370	9510	62183	83814	83814			1	
DYTLLYEEAK	1	Unmodified	1243.5972	0.59723423	3205	Q719H9	KCTD1	BTB/POZ domain-containing protein KCTD1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	66.032	65.554	2	3.0624E-06	59652	160511_QHF_FH_JSI12i_1	113.22	92.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10040	3205	9511	62184;62185	83815;83816	83815			2	
DYTQYYDHISK	1	Unmodified	1431.6307	0.63065962	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.839	47.339	3	0.00098174	42609	160511_QHF_FH_JSI10i_1	64.65	53.725			2.2431	2.5128	43.721	3	3	Median	NaN	NaN	NaN	0	0	Median	2.2431	2.6476	NaN	1	1	Median	1.2324	1.2112	NaN	1	1	Median	2.3721	2.5128	NaN	1	1	Median	471500000	152860000	318640000	0	0	0	143520000	45425000	98100000	118980000	53413000	65568000	208990000	54022000	154970000	10041	566	9512	62186;62187;62188	83817;83818;83819	83819			3	
DYTSGAMLTGELK	1	Unmodified	1384.6544	0.65443153	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	2	3	64.63	64.039	2	8.9482E-11	56923	160511_QHF_FH_JSI9i_1	152.7	116.36			0.82324	0.75	28.166	6	4	Median	0.91095	0.72802	NaN	1	0	Median	0.65712	0.77263	NaN	1	0	Median	0.97944	0.93264	38.976	2	2	Median	0.84512	0.88114	43.801	2	2	Median	1516900000	747870000	769040000	250200000	125800000	124400000	234240000	123180000	111060000	637520000	279650000	357870000	394960000	219250000	175710000	10042	1226	9513	62189;62190;62191;62192;62193;62194;62195	83820;83821;83822;83823;83824;83825;83826;83827;83828;83829;83830	83829			11	
DYTSGAMLTGELKK	2	Unmodified	1512.7494	0.74939455	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.494	8	11								5	5	6	3	55.83	55.038	2;3	8.9111E-11	49698	160511_QHF_FH_JSI10i_1	127.71	118.89			0.94392	0.94394	36.908	19	13	Median	1.0367	0.90618	39.76	5	4	Median	0.77602	0.90342	51.38	5	3	Median	0.97348	0.96829	27.763	6	4	Median	0.93392	0.96971	17.17	3	2	Median	1703900000	779000000	924870000	312100000	150510000	161590000	436270000	180790000	255480000	729160000	339300000	389860000	226350000	108400000	117950000	10043	1226	9514	62196;62197;62198;62199;62200;62201;62202;62203;62204;62205;62206;62207;62208;62209;62210;62211;62212;62213;62214	83831;83832;83833;83834;83835;83836;83837;83838;83839;83840;83841;83842;83843;83844;83845;83846;83847;83848	83836			18	
DYTYEELLNR	0	Unmodified	1314.6092	0.6091959	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	67.421	66.836	2	2.1592E-25	60542	160511_QHF_FH_JSI10i_1	185.58	180.8			0.92476	0.98422	4.5832	4	0	Median	1.2535	1.0083	NaN	1	0	Median	0.84658	0.9859	NaN	1	0	Median	0.99467	0.98255	NaN	1	0	Median	0.85976	0.90794	NaN	1	0	Median	961230000	496330000	464900000	240330000	106140000	134190000	241550000	131950000	109600000	231080000	116650000	114440000	248270000	141590000	106670000	10044	1169	9515	62215;62216;62217;62218	83849;83850;83851;83852;83853	83850			5	
DYVAPTANLDQK	1	Unmodified	1333.6514	0.65139506	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	5.61	5				4	4				1	5	4	3	48.724	43.037	2;3	9.0843E-11	39452	160511_QHF_FH_JSI12i_1	146.11	138.18			0.87502	0.92314	33.333	12	6	Median	0.9236	0.75702	NaN	1	0	Median	0.81047	0.9447	28.633	4	3	Median	0.94282	0.91559	46.94	4	2	Median	0.87108	0.92654	31.382	3	1	Plateau	3592600000	1827400000	1765300000	705170000	294920000	410250000	908710000	527670000	381040000	1104500000	602530000	501940000	874260000	402250000	472010000	10045	3213	9516	62219;62220;62221;62222;62223;62224;62225;62226;62227;62228;62229;62230;62231	83854;83855;83856;83857;83858;83859;83860;83861;83862;83863;83864;83865;83866;83867;83868;83869;83870;83871;83872;83873;83874;83875	83862			22	
DYVAPTANLDQKDK	2	Acetyl (K)	1618.7839	0.7838658	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	59.374	49.973	2	0.0026605	22392	160513_QHF_FH_JSI12Kac_2	70.488	56.583			0.47415	0.45517	48.448	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86185	0.98913	NaN	1	0	Median	0.41064	0.38046	NaN	1	0	Median	0.66841	0.70539	NaN	1	0	Median	10745000	6820100	3925100	0	0	0	2887100	1253200	1633900	4095400	3208600	886820	3762700	2358300	1404400	10046	3213	9517	62232;62233;62234	83876;83877;83878;83879;83880	83880	2797		5	
DYVAQFEASALGK	1	Unmodified	1397.6827	0.68269519	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	94.978	94.679	2	3.0846E-12	72482	160511_QHF_FH_JSI12i_1	119.03	105.44		+	0.88972	0.86927	28.012	6	1	Median	1.0629	0.86433	45.934	2	0	Median	1.1497	1.3502	NaN	1	0	Median	0.88537	0.82653	NaN	1	0	Median	0.83187	0.86276	8.194	2	1	Median	358760000	175810000	182940000	87179000	43415000	43763000	90412000	44384000	46028000	69918000	40565000	29353000	111250000	47450000	63797000	10047	58	9518	62235;62236;62237;62238;62239;62240;62241;62242;62243	83881;83882;83883;83884;83885;83886	83884			6	
DYVAVAR	0	Unmodified	792.413	0.41300269	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	1	3	3	28.319	23.611	2	0.0015805	20862	160511_QHF_FH_JSI9i_1	119.06	43.144			0.9792	0.98154	13.042	8	0	Median	1.0544	0.85375	NaN	1	0	Median	1.0003	1.1875	NaN	1	0	Median	1.1415	1.0993	12.807	3	0	Median	0.82568	0.88004	6.3617	3	0	Plateau	1814800000	897760000	917070000	398520000	180380000	218140000	463540000	220130000	243400000	520200000	266420000	253780000	432580000	230830000	201750000	10048	2094	9519	62244;62245;62246;62247;62248;62249;62250;62251	83887;83888;83889;83890;83891;83892;83893;83894;83895;83896;83897;83898;83899	83895			13	
DYVDLFR	0	Unmodified	926.44978	0.44978213	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	6.39	4	4					2	3		3	3	3	4	72.596	68.095	2	0.00021507	61400	160511_QHF_FH_JSI10i_2	138.07	102.97			0.95022	0.98978	13.479	13	1	Median	1.1583	0.96832	14.89	3	0	Plateau	0.82007	0.97798	13.288	3	0	Plateau	1.053	1.1553	12.244	3	0	Plateau	0.87564	0.94693	11.581	4	1	Median	1699600000	864200000	835440000	317480000	150160000	167320000	479350000	268620000	210730000	524780000	247870000	276910000	378040000	197560000	180480000	10049	2094	9520	62252;62253;62254;62255;62256;62257;62258;62259;62260;62261;62262;62263;62264	83900;83901;83902;83903;83904;83905;83906;83907;83908;83909;83910;83911;83912;83913;83914;83915;83916;83917;83918;83919;83920;83921;83922;83923;83924;83925;83926	83926			27	
DYVFYLAVGNYR	0	Unmodified	1478.7194	0.71941505	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				87.207	78.588	2	0.00088937	43495	160513_QHF_FH_JSI9Kac_6	85.731	76.043			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10050	5588	9521	62265	83927	83927			1	
DYVIEDDVNMAIR	0	Unmodified	1551.7239	0.72390808	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.131	80.661	2	3.78E-15	73275	160511_QHF_FH_JSI10i_1	156.12	128.38			1.0002	1.0074	20.146	4	1	Median	1.7247	1.4487	NaN	1	0	Median	0.80291	0.93762	NaN	1	0	Median	1.1016	1.0634	NaN	1	0	Median	0.90822	0.95429	NaN	1	1	Median	247580000	122520000	125070000	37970000	11808000	26162000	72424000	38366000	34058000	77754000	37608000	40146000	59435000	34735000	24699000	10051	1674	9522	62266;62267;62268;62269	83928;83929;83930;83931;83932;83933	83931			6	
DYVILATR	0	Unmodified	949.52328	0.52328142	2929	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.4	4.33	1					1	5	1			4	2	2	63.318	52.526	2	0.0040791	28742	160513_QHF_FH_JSI10Kac_4	69.598	23.88			1.1706	1.2731	38.103	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1368	1.3525	NaN	1	1	Median	1.2054	1.1983	NaN	1	0	Median	1.116	1.2137	65.264	2	2	Median	24198000	12083000	12116000	0	0	0	7614500	4191900	3422600	8648000	4385500	4262500	7935900	3505500	4430500	10052	2929	9523	62270;62271;62272;62273;62274;62275;62276;62277	83934;83935;83936;83937;83938;83939;83940;83941	83935			8	
DYVISLGVVK	1	Unmodified	1091.6227	0.62266112	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.625	76.146	2	8.0091E-05	69292	160511_QHF_FH_JSI12i_1	87.308	77.321			0.92443	0.84766	10.39	4	0	Median	0.98439	0.81004	NaN	1	0	Median	0.68895	0.79978	NaN	1	0	Median	1.0402	1.0016	NaN	1	0	Median	0.86813	0.88702	NaN	1	0	Median	216000000	101980000	114020000	27125000	12454000	14672000	70840000	41707000	29133000	48295000	22139000	26156000	69738000	25677000	44061000	10053	147;158	9524	62278;62279;62280;62281	83942;83943;83944;83945;83946	83943			5	
DYVLNCSILNPLLTLLTK	1	Unmodified	2089.1493	0.14931336	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	103.91	103.79	2	7.852E-08	89650	160511_QHF_FH_JSI12i_2	126.63	113.43			1.031	1.0896	42.093	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81206	0.80911	NaN	1	0	Median	1.309	1.4674	NaN	1	0	Median	35938000	19071000	16867000	0	0	0	0	0	0	26826000	15640000	11186000	9112000	3431500	5680500	10054	439	9525	62282;62283	83947;83948;83949	83947			3	
DYVQEVTK	1	Unmodified	980.48148	0.48147619	4676	Q9H2J4	PDCL3	Phosducin-like protein 3	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	31.075	30.624	2	0.0010939	27398	160511_QHF_FH_JSI12i_1	94.114	68.378			0.85313	0.95048	5.6606	2	0	Median	NaN	NaN	NaN	0	0	Median	0.753	0.91319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96657	0.9893	NaN	1	0	Median	132630000	73680000	58946000	0	0	0	65464000	41959000	23505000	0	0	0	67162000	31721000	35441000	10055	4676	9526	62284;62285	83950	83950			1	
DYVQKAQTK	2	Acetyl (K)	1121.5717	0.57168818	1436;1437;3263	P35579;P35580;Q7Z406	MYH9;MYH10;MYH14	Myosin-9;Myosin-10;Myosin-14	no	no	1	0	0	1			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	32.136	23.668	2	0.0042415	14163	160513_QHF_FH_JSI11Kac_3	79.148	54.993			0.15018	0.15591	65.609	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10291	0.098035	NaN	1	1	Median	0.21915	0.24794	NaN	1	1	Median	5612300	5079200	533160	0	0	0	0	0	0	4566800	4194300	372480	1045500	884850	160680	10056	1436;1437;3263	9527	62286;62287	83951;83952	83951	1400		2	
DYYCILGIEK	1	Unmodified	1272.606	0.60602477	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			77.704	77.54	2	0.0056606	70349	160511_QHF_FH_JSI10i_1	63.283	53.33			0.32704	0.37633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32704	0.37633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26871000	20254000	6616500	0	0	0	26871000	20254000	6616500	0	0	0	0	0	0	10057	5269	9528	62288	83953	83953			1	
DYYFALAHTVR	0	Unmodified	1354.667	0.66698555	855	P06737;P11217	PYGL;PYGM	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.9	0.314								1	8	4	3	2		71.887	63.241	2;3	1.4109E-07	34933	160513_QHF_FH_JSI10Kac_6	115.7	104.48			1.1547	1.062	56.009	9	4	Median	1.1976	1.0361	86.281	4	2	Median	0.99043	1.1949	17.967	3	2	Median	1.3443	1.2931	30.559	2	0	Median	NaN	NaN	NaN	0	0	Median	308160000	143640000	164520000	82952000	32784000	50167000	148570000	87726000	60839000	76642000	23129000	53513000	0	0	0	10058	855	9529	62289;62290;62291;62292;62293;62294;62295;62296;62297	83954;83955;83956;83957;83958;83959	83959			5	
DYYFVTR	0	Unmodified	962.44978	0.44978213	2763	Q16774	GUK1	Guanylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.07	2						3	2		1	2	1	3	57.155	49.212	2	0.020458	45470	160511_QHF_FH_JSI12i_1	60.682	17.616			0.89924	1.6761	34.61	7	2	Linear	1.9836	1.6331	NaN	1	1	Median	0.64059	0.7457	40.426	2	0	Median	1.0121	0.99155	NaN	1	0	Median	1.2956	1.3847	24.795	3	1	Plateau	86153000	39573000	46579000	27133000	12173000	14960000	7606700	3924800	3681900	4494300	2630600	1863800	46918000	20845000	26073000	10059	2763	9530	62298;62299;62300;62301;62302;62303;62304	83960;83961;83962;83963;83964;83965;83966;83967	83960			8	
DYYINIR	0	Unmodified	955.47633	0.47633123	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.67	4						3	2		2	2	3	2	58.989	53.234	2	0.0017113	48825	160511_QHF_FH_JSI12i_1	117.56	102.34			0.95446	0.98482	10.222	8	0	Median	1.2243	1.0344	NaN	1	0	Median	0.80649	0.96054	5.2926	2	0	Median	1.0168	0.97263	8.8457	3	0	Median	0.86187	0.91085	19.367	2	0	Median	556970000	276680000	280290000	66154000	31687000	34467000	197260000	95994000	101270000	151220000	75466000	75754000	142340000	73534000	68804000	10060	300	9531	62305;62306;62307;62308;62309;62310;62311;62312;62313	83968;83969;83970;83971;83972;83973;83974;83975;83976;83977;83978;83979;83980;83981	83971			14	
DYYINIRK	1	Unmodified	1083.5713	0.57129425	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		3	2	2	42.881	41.152	2;3	0.00015472	35122	160511_QHF_FH_JSI12i_3	101.64	76.022			1.0355	1.0434	18.385	7	1	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.2969	27.85	3	1	Plateau	1.1556	1.0846	19.777	2	0	Median	0.98867	1.0069	5.0411	2	0	Median	665310000	307290000	358020000	0	0	0	86043000	36537000	49507000	215130000	94916000	120210000	364140000	175840000	188300000	10061	300	9532	62314;62315;62316;62317;62318;62319;62320	83982;83983;83984;83985;83986;83987;83988;83989;83990;83991;83992;83993	83992			12	
DYYQTLGLAR	0	Unmodified	1198.5982	0.59823728	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.37	2						3			1	2	1	1	63.921	58.113	2	1.6843E-05	52114	160511_QHF_FH_JSI9i_1	146.79	130.45			0.8958	1.1517	26.351	4	2	Linear	1.0069	0.81063	NaN	1	1	Median	0.82597	0.97316	NaN	1	1	Median	1.3853	1.3886	NaN	1	0	Median	1.2538	1.363	NaN	1	0	Median	357440000	178040000	179400000	176950000	86186000	90762000	172290000	88082000	84213000	3797400	1587700	2209800	4399800	2186700	2213100	10062	1262	9533	62321;62322;62323;62324;62325	83994;83995;83996;83997;83998	83997			5	
DYYSLIK	1	Unmodified	900.45928	0.45928418	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		57.36	56.942	2	0.0165	51617	160511_QHF_FH_JSI11i_1	56.011	36.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10063	3009	9534	62326	83999	83999			1	
EAAAAALK	1	Unmodified	743.41775	0.41775372	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.95	7	3				3				3	4	3	3	12.681	10.659	1;2	0.0064436	6511	160513_QHF_FH_JSI10Kac_3	75.189	38.096			2.1894	2.0919	46.599	13	3	Linear	2.3658	1.8889	61.445	3	1	Plateau	0.80021	0.94502	41.161	4	1	Median	0.65429	0.64821	68.834	3	1	Median	1.0932	1.1622	27.162	3	0	Plateau	5391500000	2747400000	2644000000	1459100000	591480000	867610000	1570800000	822770000	748050000	1051200000	631700000	419520000	1310300000	701500000	608850000	10064	1080	9535	62327;62328;62329;62330;62331;62332;62333;62334;62335;62336;62337;62338;62339	84000;84001;84002;84003;84004;84005;84006;84007;84008;84009	84008			9	
EAAAAALKK	2	Unmodified	871.51272	0.51271674	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	8.9833	9.0809	2	0.0012739	6829	160511_QHF_FH_JSI11i_3	80.229	60.593			0.77014	0.79298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77014	0.79298	NaN	1	1	Median	99424000	37100000	62324000	0	0	0	0	0	0	0	0	0	99424000	37100000	62324000	10065	1080	9536	62340;62341;62342	84010;84011;84012	84010			3	
EAAAALVEEETRR	0	Unmodified	1443.7318	0.73177065	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	36.447	36.03	2;3	0.00029832	30631	160511_QHF_FH_JSI12i_3	144.17	84.746			1.1595	1.1721	17.658	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2658	1.5356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1275	1.1364	4.3783	2	1	Median	466520000	223710000	242810000	0	0	0	242930000	119420000	123510000	0	0	0	223590000	104290000	119300000	10066	585	9537	62343;62344;62345	84013;84014;84015	84014			2	
EAAAQEAGADTPGK	1	Unmodified	1314.6052	0.60517315	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		11.238	11.002	2	1.1705E-31	8603	160511_QHF_FH_JSI11i_1	168.98	128.26			0.84144	1.0012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84144	1.0012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53666000	23819000	29847000	0	0	0	53666000	23819000	29847000	0	0	0	0	0	0	10067	697	9538	62346;62347	84016;84017	84016			2	
EAAASGLPLMVIIHK	1	Unmodified	1548.8698	0.86978446	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.35		8	6					1	6	6	5	5	5	83.517	80.36	2;3	3.6276E-24	41884	160513_QHF_FH_JSI10Kac_6	126.63	122.07			1.0844	1.0345	18.127	21	1	Median	1.1563	0.96704	10.926	6	0	Median	0.83954	0.98654	13.727	5	1	Median	1.0944	1.0822	24.55	5	0	Median	1.0336	1.1308	22.728	5	0	Median	3772500000	1849200000	1923300000	778480000	381640000	396850000	1103300000	565830000	537510000	1097900000	498530000	599370000	792820000	403240000	389580000	10068	741	9539	62348;62349;62350;62351;62352;62353;62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364;62365;62366;62367;62368	84018;84019;84020;84021;84022;84023;84024;84025;84026;84027;84028;84029;84030;84031;84032;84033;84034;84035;84036;84037;84038;84039;84040;84041;84042;84043;84044;84045;84046;84047;84048	84046			29	
EAAASGLPLMVIIHK	1	Oxidation (M)	1564.8647	0.86469908	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.11		4						7	2	4	4	4	1	75.702	68.397	2;3	0.0001205	60712	160511_QHF_FH_JSI12i_2	71.933	62.89			1.0091	0.92605	77.689	13	5	Median	0.96766	0.8123	104.36	4	2	Median	0.74129	0.88856	18.59	4	2	Median	1.2006	1.1743	95.354	4	1	Median	1.2421	1.363	NaN	1	0	Median	440000000	311530000	128470000	163390000	127640000	35758000	77474000	42355000	35119000	177100000	133060000	44044000	22031000	8478500	13552000	10069	741	9539	62369;62370;62371;62372;62373;62374;62375;62376;62377;62378;62379;62380;62381	84049;84050;84051;84052;84053;84054;84055;84056;84057;84058;84059;84060;84061;84062;84063;84064	84049		256	16	
EAAATEIRR	0	Unmodified	1015.5411	0.54105675	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By matching	2.25	0.433		3	1							1	1	1	1	8.4636	8.201	3	0.013869	6057	160511_QHF_FH_JSI9i_2	28.958	13.076			1.0115	1.1208	23.918	4	0	Median	1.3588	1.1603	NaN	1	0	Median	0.95474	1.1448	NaN	1	0	Median	1.0717	1.0973	NaN	1	0	Median	0.69762	0.70441	NaN	1	0	Median	388070000	184130000	203940000	85429000	31093000	54336000	151170000	78592000	72578000	96111000	42589000	53522000	55362000	31859000	23503000	10070	1882	9540	62382;62383;62384;62385	84065	84065			1	
EAADAIDAEGASAPLMELLHSR	0	Unmodified	2266.09	0.089960579	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	95.806	95.726	3	5.3225E-29	82990	160511_QHF_FH_JSI12i_3	132.83	129.02			0.82289	1.0923	19.587	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.97425	1.2166	NaN	1	0	Median	1.1717	1.0923	NaN	1	1	Median	0.82289	0.83195	NaN	1	0	Median	471270000	249870000	221390000	0	0	0	108030000	62397000	45635000	224310000	96129000	128180000	138920000	91349000	47572000	10071	1065	9541	62386;62387;62388	84066;84067;84068	84068			3	
EAADAIDAEGASAPLMELLHSR	0	Oxidation (M)	2282.0849	0.084875202	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	86.253	86.1	3	0.0027405	74735	160511_QHF_FH_JSI12i_3	42.908	34.089			0.66851	0.70246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66851	0.70246	NaN	1	1	Median	18159000	8343000	9815900	0	0	0	0	0	0	0	0	0	18159000	8343000	9815900	10072	1065	9541	62389	84069	84069		706	1	
EAADGYQR	0	Unmodified	908.39881	0.39880919	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	6.4204	3.7861	2	0.00015898	3878	160511_QHF_FH_JSI12i_1	124.08	85.841			0.94147	0.93929	7.5692	9	0	Median	1.1987	0.97652	NaN	1	0	Median	0.75536	0.89323	7.4995	3	0	Median	0.97191	0.93929	2.2831	3	0	Median	0.94468	1.0256	1.7543	2	0	Median	4121500000	2165200000	1956300000	672190000	331590000	340600000	1107000000	614840000	492110000	1227100000	648320000	578780000	1115300000	570470000	544820000	10073	1386	9542	62390;62391;62392;62393;62394;62395;62396;62397;62398	84070;84071;84072;84073;84074;84075;84076	84071			7	
EAADIIQK	1	Unmodified	886.476	0.47599688	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.02	21.517	2	0.042075	18919	160511_QHF_FH_JSI12i_1	39.022	12.42			0.7262	0.75458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7262	0.75458	NaN	1	0	Median	53343000	32910000	20433000	0	0	0	0	0	0	0	0	0	53343000	32910000	20433000	10074	141	9543	62399	84077	84077			1	
EAADMLK	1	Unmodified	776.37384	0.37383999	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			18.858	18.164	2	0.037155	15168	160511_QHF_FH_JSI9i_1	48.787	48.787			1.3168	1.2963	22.875	2	0	Median	1.8207	1.5239	NaN	1	0	Median	0.95235	1.1027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	346670000	182310000	164370000	146440000	73048000	73391000	200230000	109260000	90976000	0	0	0	0	0	0	10075	133	9544	62400;62401	84078	84078			1	
EAADPLASK	1	Unmodified	900.45526	0.45526144	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	3					3				1		3	2	19.172	18.594	2	4.6657E-06	15492	160511_QHF_FH_JSI9i_1	118.5	87.883			1.1363	1.0839	21.107	3	0	Plateau	1.2471	1.0169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1363	1.0839	NaN	1	0	Median	0.6887	0.73144	NaN	1	0	Median	911000000	435120000	475870000	308070000	132570000	175490000	0	0	0	313130000	152290000	160840000	289800000	150260000	139540000	10076	1804	9545	62402;62403;62404;62405;62406;62407	84079;84080;84081;84082;84083;84084;84085;84086;84087	84085			9	
EAADWVSGHFPSPIR	0	Unmodified	1667.8056	0.80560429	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.968	68.67	3	0.01564	59555	160511_QHF_FH_JSI12i_3	40.962	33.238			1.0908	1.1532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0908	1.1532	NaN	1	1	Median	58451000	27064000	31387000	0	0	0	0	0	0	0	0	0	58451000	27064000	31387000	10077	1307	9546	62408	84088	84088			1	
EAAEAEAEVPVVQYVGER	0	Unmodified	1944.9429	0.94288564	4120	Q96I51	WBSCR16	Williams-Beuren syndrome chromosomal region 16 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	66.589	66.256	2	2.9886E-32	60419	160511_QHF_FH_JSI12i_1	146.59	123.21			0.89029	0.99006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89029	0.99006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18918000	12380000	6538400	0	0	0	18918000	12380000	6538400	0	0	0	0	0	0	10078	4120	9547	62409;62410;62411	84089;84090;84091	84089			3	
EAAEAGAEAR	0	Unmodified	973.44649	0.44648767	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	5.7478	4.0583	2	2.3938E-07	3267	160511_QHF_FH_JSI11i_1	115.13	67.784			1.2055	1.2238	14.637	5	0	Median	1.4958	1.2238	NaN	1	0	Median	1.0647	1.2195	NaN	1	0	Median	1.0466	1.0193	NaN	1	0	Median	1.3107	1.377	15.782	2	0	Median	483480000	220620000	262860000	90554000	37611000	52943000	117330000	58383000	58950000	142990000	62506000	80484000	132600000	62117000	70483000	10079	2506	9548	62412;62413;62414;62415;62416;62417	84092;84093;84094;84095;84096;84097;84098;84099;84100	84092			9	
EAAEAIEAEGATAPLTELLHSR	0	Unmodified	2278.1441	0.14410464	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.362	88.307	3	0.00017253	76575	160511_QHF_FH_JSI12i_3	64.749	55.93			1.4547	1.4017	5.9165	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4393	1.3443	NaN	1	0	Median	1.4703	1.4616	NaN	1	0	Median	127800000	56333000	71468000	0	0	0	0	0	0	50685000	24428000	26257000	77117000	31906000	45211000	10080	1422	9549	62418;62419	84101;84102	84102			0	
EAAEGLR	0	Unmodified	744.37662	0.37661719	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	8.2518	7.8852	2	0.0094015	5648	160511_QHF_FH_JSI11i_1	79.307	10.606			0.88466	0.91102	52.749	5	0	Median	1.3078	1.0844	NaN	1	0	Median	0.32071	0.40575	NaN	1	0	Median	0.57564	0.57269	69.717	2	0	Median	0.88466	0.91102	NaN	1	0	Median	675380000	352880000	322500000	192780000	89631000	103150000	41095000	32090000	9005200	269600000	142360000	127230000	171910000	88799000	83114000	10081	5616;5628	9550	62420;62421;62422;62423;62424	84103;84104;84105;84106	84103			4	
EAAEIYR	0	Unmodified	850.41848	0.418482	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.362	14.904	2	0.017524	12639	160511_QHF_FH_JSI12i_1	61.357	20.055			1.0844	0.97674	15.748	4	1	Median	1.15	0.95039	NaN	1	1	Median	0.69839	0.84108	NaN	1	0	Median	1.0262	1.0038	NaN	1	0	Median	1.1459	1.2271	NaN	1	0	Median	938990000	491310000	447680000	158470000	63888000	94585000	291080000	177810000	113280000	221800000	105270000	116530000	267630000	144350000	123280000	10082	4518	9551	62425;62426;62427;62428	84107;84108;84109;84110	84108			4	
EAAEKAK	2	Acetyl (K)	787.40758	0.40758296	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		5.5957	-1.7222	2	0.022386	1913	160513_QHF_FH_JSI11Kac_3	75.189	14.39			0.23495	0.22712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23495	0.22712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10467000	8329200	2137400	0	0	0	0	0	0	10467000	8329200	2137400	0	0	0	10083	1480	9552	62429	84111	84111	1472		1	
EAAEKGTSK	2	Acetyl (K)	961.47164	0.47163978	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	6.1701	-1.0513	2	0.003654	1911	160513_QHF_FH_JSI12Kac_2	78.334	36.226			0.62669	0.62255	0.10924	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65303	0.62304	NaN	1	0	Median	0.60141	0.62207	NaN	1	0	Median	5643500	3478900	2164700	0	0	0	0	0	0	2097000	1499300	597650	3546500	1979500	1567000	10084	4701	9553	62430;62431	84112;84113	84113	3219		2	
EAAEMGK	1	Unmodified	734.32689	0.3268898	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	5.81	4	4	4		2	3	1		2	4	5	5	6	6.0212	2.9437	2	0.0015044	2184	160513_QHF_FH_JSI10Kac_3	107.43	90.503			0.86411	0.88253	42.458	20	1	Median	1.2326	1.0745	72.6	4	1	Median	0.62417	0.64524	52.21	5	0	Median	0.92253	0.88227	35.196	5	0	Median	0.86411	0.90381	18.039	6	0	Median	98915000000	48025000000	50891000000	16745000000	7237700000	9507500000	28142000000	13685000000	14457000000	27331000000	12721000000	14609000000	26698000000	14381000000	12317000000	10085	2072;2231	9554	62432;62433;62434;62435;62436;62437;62438;62439;62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451	84114;84115;84116;84117;84118;84119;84120;84121;84122;84123;84124;84125;84126;84127;84128;84129;84130;84131;84132;84133;84134;84135;84136;84137;84138;84139;84140;84141;84142;84143;84144;84145	84138			32	
EAAEMGK	1	Oxidation (M)	750.3218	0.32180442	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	1	0	By MS/MS				13	0						1				1				3.7133	-14.098	2	0.018863	1088	160513_QHF_FH_JSI9Kac_3	66.799	45.253			1.2544	1.0295	NaN	1	0	Median	1.2544	1.0295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73063000	31064000	41999000	73063000	31064000	41999000	0	0	0	0	0	0	0	0	0	10086	2072;2231	9554	62452	84146;84147	84146		1730	2	
EAAEMGKGSFKYAWVLDK	3	Acetyl (K)	2071.0085	0.0084627814	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	81.011	71.633	3	1.6653E-07	39359	160513_QHF_FH_JSI11Kac_6	113.54	91.067			0.44335	0.44893	50.44	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32937	0.31425	NaN	1	0	Median	0.59677	0.64132	NaN	1	0	Median	151840000	117250000	34592000	0	0	0	0	0	0	128350000	104880000	23473000	23488000	12369000	11119000	10087	2072;2231	9555	62453;62454	84148;84149	84148	2144		2	
EAAENSLVAYK	1	Unmodified	1193.5928	0.59281755	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.56	4	5	5		2	3	3	1		4	6	6	7	37.066	32.917	2	1.6204E-104	29380	160511_QHF_FH_JSI10i_1	270	245.08			1.0422	1.0043	32.787	23	3	Median	1.1352	0.9501	6.1617	4	0	Median	0.89252	1.0725	19.912	6	0	Median	0.93954	0.91433	26.917	6	0	Median	1.083	1.1958	46.897	7	3	Median	16642000000	8281000000	8361300000	3268700000	1545400000	1723300000	4889700000	2512300000	2377400000	5001800000	2412200000	2589600000	3482100000	1811200000	1670900000	10088	1990	9556	62455;62456;62457;62458;62459;62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476;62477	84150;84151;84152;84153;84154;84155;84156;84157;84158;84159;84160;84161;84162;84163;84164;84165;84166;84167;84168;84169;84170;84171;84172;84173;84174;84175;84176;84177;84178;84179;84180;84181;84182;84183;84184;84185;84186;84187;84188;84189;84190;84191	84173			42	
EAAEQDVEK	1	Unmodified	1017.4615	0.46146903	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.21	4	4	2	1	2					3	3	4	3	8.7289	6.5802	2	7.228E-17	3372	160513_QHF_FH_JSI12Kac_2	171.56	88.3			1.0279	1.0753	18.425	12	0	Median	1.2348	1.0927	12.05	3	0	Plateau	0.97877	1.1672	11.46	2	0	Median	1.032	1.0102	16.24	4	0	Median	0.90282	0.99009	20.22	3	0	Median	22811000000	10431000000	12380000000	5814600000	2241800000	3572800000	4761200000	2131600000	2629700000	6295700000	2785300000	3510400000	5939300000	3271900000	2667300000	10089	1275	9557	62478;62479;62480;62481;62482;62483;62484;62485;62486;62487;62488;62489;62490	84192;84193;84194;84195;84196;84197;84198;84199;84200;84201;84202;84203;84204;84205;84206;84207	84207			16	
EAAEQDVEKK	2	Unmodified	1145.5564	0.55643205	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	3	1	6.8646	6.6037	2;3	4.1748E-06	4377	160511_QHF_FH_JSI9i_1	113.93	79.74			1.0234	0.96003	44.616	6	3	Median	1.0688	0.88891	NaN	1	1	Median	0.60605	0.72258	NaN	1	0	Median	1.0615	1.0368	67.925	3	2	Median	0.98668	1.0561	NaN	1	0	Median	930140000	460880000	469260000	163130000	59035000	104090000	188080000	111690000	76388000	314960000	168100000	146860000	263980000	122060000	141930000	10090	1275	9558	62491;62492;62493;62494;62495;62496;62497	84208;84209;84210;84211;84212;84213;84214	84214			7	
EAAEQDVEKK	2	Acetyl (K)	1187.567	0.56699673	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	18.09	11.079	2	0.013806	6533	160513_QHF_FH_JSI12Kac_2	67.563	48.783			0.2913	0.29852	44.361	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41854	0.40851	NaN	1	0	Median	0.20274	0.21815	NaN	1	1	Median	4083900	3177000	906950	0	0	0	0	0	0	2553300	1791100	762110	1530700	1385800	144840	10091	1275	9558	62498;62499	84215;84216	84216	1184		2	
EAAEVLQNNR	0	Unmodified	1142.568	0.56799978	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	17.38	16.834	2	2.3708E-09	14496	160511_QHF_FH_JSI12i_1	129.29	96.027			0.62925	0.63292	33.174	6	5	Median	0.61839	0.50676	48.392	2	2	Median	0.58895	0.69816	45.631	2	2	Median	0.65085	0.63653	NaN	1	1	Median	0.60836	0.62932	NaN	1	0	Median	326290000	211550000	114730000	95958000	60192000	35766000	99170000	63260000	35910000	56880000	33943000	22937000	74278000	54156000	20122000	10092	1935	9559	62500;62501;62502;62503;62504;62505	84217;84218;84219;84220;84221;84222;84223	84219			7	
EAAEVLQNNRR	0	Unmodified	1298.6691	0.66911081	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		4	2							3	3			12.826	12.143	2;3	1.0499E-07	9848	160511_QHF_FH_JSI9i_2	124.92	95.155			0.88991	0.90205	21.244	6	0	Median	1.3037	1.1068	14.73	3	0	Median	0.53879	0.64873	18.387	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	925790000	483480000	442310000	514510000	233920000	280590000	411290000	249560000	161720000	0	0	0	0	0	0	10093	1935	9560	62506;62507;62508;62509;62510;62511	84224;84225;84226;84227;84228;84229;84230;84231;84232;84233	84230			10	
EAAFDDAVEER	0	Unmodified	1250.5415	0.54151026	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	37.542	33.354	2	2.2889E-07	30210	160511_QHF_FH_JSI12i_1	121.9	109.27			0.95773	1.1303	9.5123	7	2	Median	1.3926	1.1303	NaN	1	0	Median	0.89692	1.0647	11.326	2	1	Median	1.1851	1.1473	0.9499	2	1	Median	0.88889	0.94942	2.0806	2	0	Median	2049200000	1117700000	931530000	393000000	255510000	137490000	613120000	310650000	302470000	641670000	310060000	331610000	401450000	241490000	159950000	10094	2283	9561	62512;62513;62514;62515;62516;62517;62518	84234;84235;84236;84237;84238;84239;84240;84241;84242;84243	84235			10	
EAAGEGPALYEDPPDQK	1	Unmodified	1785.8057	0.80572345	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.72	7				4	3				2	2	6	4	44.163	39.506	2;3	1.2264E-183	35754	160511_QHF_FH_JSI11i_1	319.58	309.69			0.98062	0.97672	15.123	13	1	Median	1.0577	0.86621	3.7332	2	0	Median	0.84796	0.98081	10.066	2	0	Median	1.007	0.97672	10.807	5	1	Median	0.95713	1.014	21.016	4	0	Median	2505500000	1222700000	1282800000	389170000	197250000	191920000	455430000	252220000	203210000	795030000	377670000	417360000	865910000	395560000	470350000	10095	1294	9562	62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532	84244;84245;84246;84247;84248;84249;84250;84251;84252;84253;84254;84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270;84271;84272	84247			29	
EAAGGNDSSGATSPINPAVALE	0	Unmodified	2026.9443	0.9443422	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	71.21	70.677	2	1.49E-09	64308	160511_QHF_FH_JSI11i_1	107.46	89.322			1.2096	1.1737	12.984	4	1	Median	1.4248	1.2121	NaN	1	1	Median	0.80941	0.95661	NaN	1	0	Median	1.347	1.294	NaN	1	0	Median	1.0862	1.1364	NaN	1	0	Median	167480000	80213000	87270000	36796000	14151000	22645000	52774000	28403000	24371000	48441000	23161000	25280000	29471000	14498000	14973000	10096	1388	9563	62533;62534;62535;62536;62537	84273;84274;84275;84276;84277;84278;84279	84274			7	
EAAGPVGPALEPPTLPLHR	0	Unmodified	1921.0421	0.042146171	137	O00459	PIK3R2	Phosphatidylinositol 3-kinase regulatory subunit beta	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.505	72.505	3	0.041843	64673	160511_QHF_FH_JSI11i_3	21.987	6.8326			1.0001	0.94474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0001	0.94474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17256000	8789600	8466700	0	0	0	0	0	0	17256000	8789600	8466700	0	0	0	10097	137	9564	62538	84280	84280			1	
EAAGTTAAAGTGGATEQPPR	0	Unmodified	1812.8602	0.86021864	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	19.83	19.198	2	1.073E-82	16704	160511_QHF_FH_JSI12i_1	244.67	226.59			1.093	1.1636	8.9414	3	0	Plateau	1.3774	1.1152	NaN	1	0	Median	0.83748	0.98004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.093	1.1636	NaN	1	0	Median	128830000	67300000	61525000	42188000	19027000	23161000	41833000	25311000	16521000	0	0	0	44805000	22961000	21843000	10098	318	9565	62539;62540;62541	84281;84282;84283;84284;84285;84286	84282			6	
EAAHLLNDALAIR	0	Unmodified	1405.7678	0.76776223	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	62.672	61.589	3	0.0019501	54491	160511_QHF_FH_JSI10i_2	58.487	43.611			1.5729	1.789	26.734	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7814	2.1612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3889	1.4808	NaN	1	1	Median	45106000	17397000	27709000	0	0	0	20916000	6719300	14197000	0	0	0	24190000	10678000	13513000	10099	4625	9566	62542;62543;62544	84287;84288;84289	84289			3	
EAAIVDPVQPQK	1	Unmodified	1293.6929	0.69286595	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	2	2	4	45.159	40.219	2	1.427E-05	35394	160511_QHF_FH_JSI9i_1	132.78	121.46			0.77293	0.77335	13.009	8	5	Median	0.99208	0.79973	NaN	1	0	Median	0.63898	0.71679	5.9964	2	2	Median	0.79403	0.76361	10.87	2	1	Median	0.82198	0.86781	20.257	3	2	Median	1066200000	641860000	424360000	176500000	81562000	94935000	374210000	270250000	103960000	298130000	181390000	116740000	217390000	108660000	108730000	10100	2764	9567	62545;62546;62547;62548;62549;62550;62551;62552;62553	84290;84291;84292;84293;84294;84295;84296;84297;84298;84299	84296			10	
EAAIWELEER	0	Unmodified	1244.6037	0.60371659	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.094	61.05	2	4.0864E-05	52377	160511_QHF_FH_JSI12i_2	94.692	83.54			1.0865	1.1689	29.844	3	2	Plateau	2.4431	2.0845	NaN	1	1	Median	1.4688	1.7732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0865	1.1689	NaN	1	0	Median	110610000	51066000	59543000	35619000	13544000	22075000	43081000	19173000	23909000	0	0	0	31908000	18349000	13559000	10101	4673	9568	62554;62555;62556;62557	84300;84301;84302;84303;84304	84301			5	
EAALAEVADEK	1	Unmodified	1144.5612	0.56118307	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	39.897	35.027	2	5.599E-06	30553	160511_QHF_FH_JSI9i_1	114.89	93.992			0.97434	0.9548	34.912	6	6	Median	0.89076	0.72212	NaN	1	1	Median	1.0658	1.2554	NaN	1	1	Median	0.82188	0.80707	47.723	2	2	Median	0.99139	1.0622	39.024	2	2	Median	681850000	397800000	284050000	228550000	142030000	86521000	3591500	2374400	1217100	207120000	120270000	86847000	242600000	133130000	109460000	10102	2594	9569	62558;62559;62560;62561;62562;62563	84305;84306;84307;84308;84309;84310	84308			6	
EAALEPSMEK	1	Unmodified	1103.5169	0.51687542	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	31.384	28.035	2	4.4899E-06	24857	160511_QHF_FH_JSI10i_1	109.66	99.398			0.8636	0.85103	21.863	6	1	Median	1.0392	0.84804	NaN	1	0	Median	0.62339	0.73998	20.274	2	1	Median	1.1052	1.0838	5.0125	2	0	Median	0.6536	0.69787	NaN	1	0	Median	1429600000	810860000	618780000	308750000	150830000	157920000	422820000	262600000	160220000	345910000	175880000	170030000	352150000	221540000	130600000	10103	4694	9570	62564;62565;62566;62567;62568;62569	84311;84312;84313;84314;84315;84316;84317;84318;84319	84316			9	
EAALGAGFSDK	1	Unmodified	1064.5138	0.51383895	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	4.92	1					3	1				1	1	3	39.722	32.864	2	6.9001E-08	29445	160511_QHF_FH_JSI12i_1	125.75	81.939			1.0297	1.1673	21.117	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97042	1.148	NaN	1	0	Median	1.4	1.3345	NaN	1	0	Median	0.9232	0.98446	26.461	2	0	Median	242650000	122810000	119830000	0	0	0	2933100	1414600	1518500	2315000	1127800	1187200	237400000	120270000	117130000	10104	1848	9571	62570;62571;62572;62573;62574	84320;84321;84322;84323;84324;84325;84326;84327	84321			8	
EAALHIFWNFPGIFGNQQQHYLDVIK	1	Unmodified	3084.561	0.56101092	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	95.626	87.12	2;3;4	2.1323E-300	51377	160513_QHF_FH_JSI10Kac_6	356.21	324.61			0.93177	0.93908	21.31	9	1	Median	0.82622	0.70011	19.126	2	0	Median	0.80429	0.95021	1.6664	2	0	Median	1.069	1.022	20.519	3	1	Median	0.87622	0.91618	9.0761	2	0	Median	8817700000	4331200000	4486500000	1711400000	851890000	859480000	2772700000	1517300000	1255400000	2415000000	1017300000	1397600000	1918600000	944660000	973960000	10105	127	9572	62575;62576;62577;62578;62579;62580;62581;62582;62583	84328;84329;84330;84331;84332;84333;84334;84335;84336;84337;84338;84339;84340;84341;84342	84339			15	
EAALPPVSPLK	1	Unmodified	1120.6492	0.64921022	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	56.033	55.378	2	2.1957E-05	50429	160511_QHF_FH_JSI12i_1	102.06	92.667			0.94931	0.95601	9.8411	4	1	Median	1.2414	1.0209	NaN	1	0	Median	0.67065	0.81239	NaN	1	0	Median	0.95189	0.93962	NaN	1	1	Median	0.94674	0.9727	NaN	1	0	Median	416520000	215440000	201080000	110670000	52591000	58082000	80694000	49098000	31596000	113520000	57379000	56141000	111640000	56375000	55260000	10106	2217	9573	62584;62585;62586;62587;62588	84343;84344;84345;84346;84347;84348;84349;84350;84351;84352;84353	84347			11	
EAALSTALSEK	1	Unmodified	1118.5819	0.58191851	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.65	8	4	2		1	3	2	1		5	7	5	4	40.895	37.12	1;2	2.7443E-23	33348	160511_QHF_FH_JSI11i_1	177.06	144.22			0.89723	1.0624	26.209	21	3	Plateau	1.0936	0.92204	33.21	5	1	Median	0.75529	0.90647	32.023	7	1	Median	1.0122	1.0037	13.34	5	1	Median	0.99063	1.0675	8.7745	4	0	Median	12157000000	6029500000	6127300000	2370100000	1040500000	1329600000	3441200000	1837700000	1603500000	3398300000	1645500000	1752800000	2947200000	1505900000	1441300000	10107	791	9574	62589;62590;62591;62592;62593;62594;62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605;62606;62607;62608;62609	84354;84355;84356;84357;84358;84359;84360;84361;84362;84363;84364;84365;84366;84367;84368;84369;84370;84371;84372;84373;84374;84375;84376;84377;84378;84379;84380;84381;84382;84383;84384;84385;84386	84356			33	
EAALSYMAAVVNANMK	1	Unmodified	1681.8168	0.81676261	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	93.214	92.647	3	0.001034	79945	160511_QHF_FH_JSI12i_2	61.409	52.81			2.7713	3.1326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7713	3.1326	NaN	1	1	Median	14056000	7769900	6285700	0	0	0	2867200	2867200	0	0	0	0	11188000	4902800	6285700	10108	647	9575	62610;62611	84387;84388	84387			2	
EAALTSEEVGADLEQVEVLQK	1	Unmodified	2257.1325	0.1325369	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	87.689	87.245	2;3	1.4925E-36	79177	160511_QHF_FH_JSI10i_1	185.55	181.11			0.87813	0.89956	11.148	4	0	Median	0.89671	0.7242	NaN	1	0	Median	0.76392	0.90519	NaN	1	0	Median	0.9387	0.89395	NaN	1	0	Median	0.85993	0.9142	NaN	1	0	Median	172420000	95501000	76920000	20486000	10676000	9809800	62685000	38434000	24251000	39549000	20293000	19256000	49701000	26098000	23603000	10109	2470	9576	62612;62613;62614;62615;62616	84389;84390;84391;84392;84393;84394;84395;84396;84397;84398;84399;84400;84401	84397			13	
EAALVQQEEEK	1	Unmodified	1272.6198	0.61976058	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	21.488	20.835	2	1.1587E-17	17880	160511_QHF_FH_JSI11i_1	216.12	156.02			2.1656	2.5707	88.963	5	5	Median	1.1646	0.95572	143.73	2	2	Median	2.1656	2.5707	NaN	1	1	Median	3.0633	2.8665	NaN	1	1	Median	1.6562	1.733	NaN	1	1	Median	413090000	166610000	246480000	146350000	73879000	72470000	59361000	21103000	38257000	70327000	24100000	46227000	137050000	47528000	89524000	10110	2604	9577	62617;62618;62619;62620;62621	84402;84403;84404;84405;84406	84402			5	
EAAMEAEIK	1	Unmodified	990.4692	0.46919694	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.947	24.381	2	2.6849E-06	21725	160511_QHF_FH_JSI12i_1	113.71	56.529			1.2546	1.2678	33.655	3	2	Median	2.7034	2.2437	NaN	1	1	Median	1.0816	1.2678	NaN	1	1	Median	1.2546	1.2384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	289340000	105030000	184310000	88006000	27525000	60480000	107430000	55073000	52354000	93910000	22433000	71478000	0	0	0	10111	203	9578	62622;62623;62624;62625	84407;84408;84409;84410	84408			4	
EAAMGQGFDR	0	Unmodified	1080.4658	0.4658429	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	22.141	21.614	2	0.017912	18872	160511_QHF_FH_JSI12i_1	42.348	31.127			0.82628	0.89902	9.209	4	0	Median	1.1658	0.95414	NaN	1	0	Median	0.78415	0.93382	NaN	1	0	Median	0.80681	0.77825	NaN	1	0	Median	0.84623	0.86551	NaN	1	0	Median	284450000	150650000	133800000	74489000	38391000	36098000	60704000	32145000	28559000	79766000	43456000	36310000	69492000	36661000	32831000	10112	1240	9579	62626;62627;62628;62629	84411	84411			1	
EAAMPAWGLEQRPHVAGKPR	1	Acetyl (K)	2242.1429	0.14293962	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	63.389	54.335	3;4	0.00035269	29800	160513_QHF_FH_JSI10Kac_6	64.203	54.788			0.8238	0.95817	21.927	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79678	0.94208	2.3958	2	0	Median	0.65022	0.64512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125730000	62720000	63013000	0	0	0	112900000	59773000	53122000	3626800	2947000	679800	9211000	0	9211000	10113	4002	9580	62630;62631;62632;62633	84412;84413;84414;84415	84414	3025		3	
EAANFIMK	1	Unmodified	922.45824	0.45823833	1536	P42356;A4QPH2	PI4KA;PI4KAP2	Phosphatidylinositol 4-kinase alpha;Putative phosphatidylinositol 4-kinase alpha-like protein P2	yes	no	0	0	0	0			By MS/MS		14	0							1					1		23.62	15.923	2	0.026792	10498	160513_QHF_FH_JSI11Kac_4	51.787	33.802			1.4031	1.3939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4031	1.3939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22525000	10487000	12038000	0	0	0	0	0	0	22525000	10487000	12038000	0	0	0	10114	1536	9581	62634	84416	84416			1	
EAANLLEGHAR	0	Unmodified	1179.5996	0.59963426	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	22.318	21.498	2;3	0.00010755	18472	160511_QHF_FH_JSI10i_2	85.958	73.722			1.0005	1.128	14.635	7	0	Median	1.8105	1.5589	NaN	1	0	Median	1.0293	1.2652	3.023	2	0	Median	1.0443	1.0656	8.0465	2	0	Median	0.9868	1.0909	3.4632	2	0	Median	513890000	245070000	268820000	79750000	31553000	48196000	138950000	64695000	74255000	178160000	78901000	99257000	117030000	69920000	47108000	10115	138	9582	62635;62636;62637;62638;62639;62640;62641	84417;84418;84419;84420;84421;84422	84422			6	
EAAPDAGAEPITADSDPAYSSK	1	Unmodified	2161.9651	0.96513722	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.734	44.064	2	4.4134E-13	40012	160511_QHF_FH_JSI12i_1	162	156.72			0.98599	1.0323	3.9652	4	0	Median	1.3163	1.0706	NaN	1	0	Median	0.88727	1.0286	NaN	1	0	Median	0.99649	0.97305	NaN	1	0	Median	0.9756	1.036	NaN	1	0	Median	379380000	201340000	178040000	68204000	33214000	34990000	101560000	59496000	42062000	104270000	52369000	51899000	105350000	56259000	49086000	10116	3499	9583	62642;62643;62644;62645	84423;84424;84425;84426;84427;84428;84429;84430;84431;84432;84433	84427			11	
EAAQEAVK	1	Unmodified	844.42905	0.42904669	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.56	4		1		2	2				1	3	3	2	6.8692	3.4453	2	0.00017737	4119	160511_QHF_FH_JSI10i_1	122.52	71.171			0.94345	0.9428	8.7558	9	0	Median	1.156	0.9428	NaN	1	0	Median	0.8353	0.99673	4.5328	3	0	Median	0.96008	1.1369	12.599	3	0	Plateau	0.94013	1.0201	14.556	2	0	Median	6266900000	2883400000	3383500000	1411500000	521710000	889830000	1558700000	773150000	785600000	1491000000	697740000	793300000	1805600000	890820000	914750000	10117	423;326	9584	62646;62647;62648;62649;62650;62651;62652;62653;62654	84434;84435;84436;84437;84438;84439;84440	84438			7	
EAAQEAVKLYNNHEIR	1	Acetyl (K)	1925.9595	0.95953875	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		58.411	47.666	3	0.00046869	26119	160513_QHF_FH_JSI11Kac_5	100.58	84.15			0.3982	0.43612	173.9	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2363	1.4916	NaN	1	0	Median	0.12826	0.12751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25841000	20527000	5313400	0	0	0	7375100	3015100	4360100	18465000	17512000	953320	0	0	0	10118	423	9585	62655;62656	84441;84442;84443	84441	212		3	
EAAQLGRK	1	Unmodified	871.48756	0.48756462	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		2.67	0.471		1	2							1	1	1		5.6635	5.3596	2	0.0034633	3324	160511_QHF_FH_JSI11i_3	72.789	11.99			0.77553	0.75364	35.122	3	1	Plateau	1.6697	1.4561	NaN	1	1	Median	0.96811	1.139	NaN	1	0	Median	0.77553	0.72835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160450000	85195000	75256000	41969000	15784000	26186000	44197000	21744000	22453000	74285000	47667000	26618000	0	0	0	10119	4879	9586	62657;62658;62659	84444;84445;84446	84444			3	
EAAQLREER	0	Unmodified	1100.5574	0.5574351	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.97		8	5				1	6		3	6	5	6	8.6563	5.1387	2;3	1.3472E-05	5565	160511_QHF_FH_JSI10i_2	128.86	67.179			0.94666	1.0347	20.791	20	1	Median	1.6541	1.3555	17.256	3	0	Median	0.92565	1.1036	28.212	6	0	Median	0.95818	0.94385	9.3006	5	0	Median	0.91757	1.0113	11.147	6	1	Median	9246800000	4629000000	4617800000	1900400000	751410000	1149000000	2231700000	1209100000	1022600000	3898800000	2016900000	1881900000	1215900000	651640000	564230000	10120	1327	9587	62660;62661;62662;62663;62664;62665;62666;62667;62668;62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679	84447;84448;84449;84450;84451;84452;84453;84454;84455;84456;84457;84458;84459;84460;84461;84462;84463;84464;84465;84466;84467;84468;84469;84470;84471;84472;84473;84474;84475	84470			29	
EAAQYGK	1	Unmodified	765.36572	0.36571815	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.7135	2.4139	2	0.0023955	3123	160511_QHF_FH_JSI11i_1	111.28	85.169			0.79514	0.83574	14.92	7	0	Median	1.1712	0.96508	NaN	1	0	Median	0.83662	0.9808	28.248	2	0	Median	0.83175	0.81944	7.2635	2	0	Median	0.76631	0.83083	0.83308	2	0	Median	4844700000	2530600000	2314000000	774090000	349570000	424530000	1302200000	664800000	637370000	1398900000	761550000	637400000	1369500000	754710000	614750000	10121	2778	9588	62680;62681;62682;62683;62684;62685;62686	84476;84477;84478;84479;84480;84481;84482;84483;84484	84477			9	
EAAQYGKK	2	Unmodified	893.46068	0.46068117	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	1		By matching		By MS/MS	2.6	0.49		2	3								1		4	4.7532	4.5548	2;3	0.00032474	2225	160511_QHF_FH_JSI12i_3	111.01	57.453			1.2998	1.367	67.49	4	2	Median	NaN	NaN	NaN	0	0	Median	0.46767	0.57601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5441	1.6732	47.064	3	2	Median	525990000	234710000	291280000	0	0	0	70873000	50189000	20684000	0	0	0	455110000	184520000	270590000	10122	2778	9589	62687;62688;62689;62690;62691	84485;84486;84487;84488;84489	84489			5	
EAAQYGKK	2	Acetyl (K)	935.47125	0.47124585	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	1	0	0	1			By MS/MS	By matching	13	0						2						1	1	12.101	4.9103	2	0.018598	5135	160513_QHF_FH_JSI11Kac_3	92.47	64.048			0.42417	0.4354	27.229	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37348	0.35915	NaN	1	0	Median	0.48174	0.52784	NaN	1	0	Median	9567800	6791700	2776100	0	0	0	0	0	0	7107100	5059200	2047900	2460700	1732500	728190	10123	2778	9589	62692;62693	84490	84490	2679		1	
EAASGTTPQK	1	Unmodified	988.48254	0.48253882	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	2	3	3	5.6272	1.4719	2	3.9935E-34	2743	160511_QHF_FH_JSI9i_1	207.29	174.03			1.0025	0.98202	9.275	9	0	Median	1.4474	1.1739	NaN	1	0	Median	0.82245	0.96953	0.11223	2	0	Median	1.0264	0.98202	4.9967	3	0	Median	0.95126	1.0465	12.961	3	0	Median	1518800000	751580000	767220000	394720000	152930000	241790000	372410000	199420000	172980000	344560000	155760000	188800000	407110000	243470000	163640000	10124	2409	9590	62694;62695;62696;62697;62698;62699;62700;62701;62702	84491;84492;84493;84494;84495;84496;84497;84498;84499;84500;84501;84502;84503;84504;84505	84501			15	
EAASILQELQVETYGSMEK	1	Unmodified	2125.0249	0.024900707	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								2	2	3	3	98.938	98.814	2;3	1.3903E-32	89734	160511_QHF_FH_JSI11i_1	151.44	137.48			1.0187	0.93782	36.313	8	2	Median	1.0503	0.90809	1.043	2	0	Median	0.50791	0.58781	69.576	2	0	Median	1.1235	1.0715	5.0174	2	1	Median	0.88108	0.89644	20.682	2	1	Median	217800000	99264000	118540000	46852000	17318000	29534000	77851000	38164000	39687000	40777000	16663000	24114000	52323000	27119000	25204000	10125	110	9591	62703;62704;62705;62706;62707;62708;62709;62710;62711;62712	84506;84507;84508;84509;84510;84511;84512;84513;84514;84515;84516;84517	84509			10	
EAASILQELQVETYGSMEK	1	Oxidation (M)	2141.0198	0.019815329	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	1	0		By MS/MS	By MS/MS		1	0	2										1	1		88.209	87.849	3	0.0044971	80120	160511_QHF_FH_JSI11i_1	46.621	30.315			1.3588	1.3207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3588	1.3207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17419000	8368300	9050800	0	0	0	0	0	0	17419000	8368300	9050800	0	0	0	10126	110	9591	62713;62714	84518;84519	84518		48	2	
EAASQRPLSSSASNR	0	Unmodified	1559.7652	0.76519604	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				8.6888	8.0971	3	0.04477	5827	160511_QHF_FH_JSI9i_3	28.58	21.699			1.4035	1.1559	NaN	1	0	Median	1.4035	1.1559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40461000	14351000	26110000	40461000	14351000	26110000	0	0	0	0	0	0	0	0	0	10127	5409	9592	62715	84520	84520			1	
EAASSSSGTQPAPPAPASPWDSKK	2	Unmodified	2353.1186	0.11861817	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.673	39.242	3	1.1022E-08	35155	160511_QHF_FH_JSI10i_1	71.651	67.553			1.1288	1.1578	31.99	3	1	Median	NaN	NaN	NaN	0	0	Median	0.72134	0.82485	NaN	1	0	Median	1.616	1.5634	NaN	1	1	Median	1.1288	1.1578	NaN	1	0	Median	92190000	43441000	48748000	0	0	0	29629000	19918000	9711700	28539000	6942500	21596000	34022000	16581000	17441000	10128	4771	9593	62716;62717;62718	84521;84522;84523;84524;84525;84526;84527	84527			7	
EAATAVEQEK	1	Unmodified	1074.5193	0.51931826	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	4	3	1	12.525	8.2759	2	3.6232E-34	7814	160511_QHF_FH_JSI11i_1	207.68	138.48			0.8928	0.92989	23.845	9	2	Median	1.1382	0.93402	NaN	1	0	Median	0.83104	0.99895	38.632	4	2	Median	0.91731	0.89303	3.0174	3	0	Median	0.79931	0.84421	NaN	1	0	Median	2878700000	1612500000	1266200000	820190000	431080000	389110000	688520000	413100000	275420000	751400000	410360000	341040000	618590000	357970000	260620000	10129	731	9594	62719;62720;62721;62722;62723;62724;62725;62726;62727	84528;84529;84530;84531;84532;84533;84534;84535;84536;84537;84538;84539	84529			12	
EAATLEVERPLPMEVEK	1	Unmodified	1939.9925	0.99247837	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.04	0.789	7	9	8							4	6	7	7	62.347	61.579	2;3	1.2307E-30	55877	160511_QHF_FH_JSI10i_1	188.27	171.05			0.91943	0.94941	15.498	23	5	Median	1.181	0.9938	6.6627	4	0	Median	0.77781	0.93847	13.092	6	2	Median	0.90372	0.9009	25.116	6	1	Median	0.94335	1.0505	12.02	7	2	Median	16201000000	7946000000	8254600000	2346200000	1043000000	1303100000	3105700000	1602800000	1502900000	4148000000	2090700000	2057300000	6600800000	3209500000	3391300000	10130	1758	9595	62728;62729;62730;62731;62732;62733;62734;62735;62736;62737;62738;62739;62740;62741;62742;62743;62744;62745;62746;62747;62748;62749;62750;62751	84540;84541;84542;84543;84544;84545;84546;84547;84548;84549;84550;84551;84552;84553;84554;84555;84556;84557;84558;84559;84560;84561;84562;84563;84564;84565;84566;84567;84568;84569;84570;84571;84572;84573;84574;84575;84576;84577;84578;84579;84580;84581;84582;84583;84584;84585;84586;84587;84588;84589	84564			50	
EAATLEVERPLPMEVEK	1	Oxidation (M)	1955.9874	0.98739299	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	51.838	51.011	3	4.8075E-06	43957	160511_QHF_FH_JSI11i_2	103.13	86.252			0.97806	1.0257	4.4915	5	0	Median	1.2216	1.0742	NaN	1	0	Median	0.76606	0.94955	NaN	1	0	Median	0.97806	1.0028	NaN	1	0	Median	0.96227	1.0268	0.15606	2	0	Median	581770000	314670000	267100000	99870000	45572000	54297000	102030000	65646000	36387000	161100000	83758000	77339000	218770000	119690000	99080000	10131	1758	9595	62752;62753;62754;62755;62756	84590;84591;84592;84593;84594;84595	84592		1435	6	
EAATQAQQTLGSTIDK	1	Unmodified	1660.8268	0.82679325	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.2	7				2	1				2	2	2	4	43.011	40.397	2;3	1.8592E-41	36489	160511_QHF_FH_JSI12i_1	249.66	222.98			1.1204	1.0403	34.025	9	3	Median	1.4807	1.2027	40.56	2	1	Median	1.0651	1.2722	41.136	2	1	Median	1.2027	1.1604	15.441	2	0	Median	0.83003	0.87581	52.779	3	1	Median	1188000000	552120000	635830000	257580000	114580000	143010000	368850000	177000000	191850000	252490000	113610000	138880000	309030000	146940000	162090000	10132	1609	9596	62757;62758;62759;62760;62761;62762;62763;62764;62765;62766	84596;84597;84598;84599;84600;84601;84602;84603;84604;84605;84606;84607;84608;84609;84610	84598			15	
EAATSNLK	1	Unmodified	832.42905	0.42904669	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	8.3236	5.0145	2	0.0012164	5235	160511_QHF_FH_JSI10i_1	92.47	64.252			0.9115	0.94857	5.9199	7	0	Median	1.1452	0.94857	NaN	1	0	Median	0.86887	1.0257	6.466	2	0	Median	0.967	0.94978	1.0126	2	0	Median	0.83355	0.90317	1.5666	2	0	Median	6151900000	3208500000	2943400000	1590700000	832400000	758310000	1633000000	881220000	751770000	1309200000	620160000	689050000	1619000000	874740000	744240000	10133	1345	9597	62767;62768;62769;62770;62771;62772;62773	84611;84612;84613;84614;84615;84616;84617;84618;84619	84616			9	
EAATTGPQVK	1	Unmodified	1000.5189	0.51892433	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	2	3	11.018	9.0965	2	1.617E-05	7796	160511_QHF_FH_JSI12i_1	116.05	78.492			0.77971	0.82188	16.069	9	0	Median	1.2806	1.0638	19.429	2	0	Median	0.71047	0.83713	11.405	2	0	Median	0.77801	0.75488	12.026	2	0	Median	0.747	0.79243	3.6333	3	0	Median	1356800000	727860000	628910000	363180000	163880000	199300000	363050000	214450000	148600000	240870000	139200000	101670000	389670000	210330000	179330000	10134	3341	9598	62774;62775;62776;62777;62778;62779;62780;62781;62782	84620;84621;84622;84623;84624;84625;84626	84622			7	
EAAVSASDILQESAIHSPGTVEK	1	Unmodified	2338.1652	0.16523401	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		67.6	67.152	3	0.00010512	60688	160511_QHF_FH_JSI10i_1	51.234	43.046			0.78956	0.84551	9.6606	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69919	0.78968	NaN	1	0	Median	0.89162	0.90529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62685000	40400000	22285000	0	0	0	34456000	22754000	11702000	28229000	17645000	10583000	0	0	0	10135	4002	9599	62783;62784	84627;84628;84629	84627			3	
EAAVSHAGSMHR	0	Unmodified	1251.5779	0.57785296	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			4								1	2	1	6.0089	5.9088	2;3	2.828E-05	3738	160511_QHF_FH_JSI11i_3	67.952	34.082			0.60378	0.65604	12.877	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.68619	0.78262	NaN	1	0	Median	0.65671	0.62259	11.338	2	0	Median	0.63697	0.63803	NaN	1	0	Median	216170000	130280000	85890000	0	0	0	48250000	31081000	17169000	114930000	64210000	50720000	52987000	34987000	18001000	10136	5507	9600	62785;62786;62787;62788	84630;84631;84632	84630			3	
EAAWAISNLTISGR	0	Unmodified	1487.7732	0.77324153	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1		2	2	1	76.269	74.468	2	7.0325E-05	65814	160511_QHF_FH_JSI11i_2	116.03	99.394			0.76965	0.88185	3.6265	5	3	Median	NaN	NaN	NaN	0	0	Median	0.72572	0.87588	4.2562	2	1	Median	0.89426	0.90299	3.3499	2	2	Median	0.76447	0.85292	NaN	1	0	Median	431340000	246890000	184450000	0	0	0	135660000	84354000	51303000	222790000	121730000	101060000	72886000	40800000	32086000	10137	147;158	9601	62789;62790;62791;62792;62793	84633;84634;84635;84636;84637;84638	84636			6	
EAAWAISNLTISGRK	1	Unmodified	1615.8682	0.86820455	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		64.304	63.556	3	7.9542E-05	52167	160511_QHF_FH_JSI9i_3	78.69	74.447			0.91633	0.81133	21.542	2	0	Median	1.153	0.94482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72822	0.6967	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131590000	73488000	58103000	66833000	30470000	36363000	0	0	0	64758000	43018000	21740000	0	0	0	10138	147;158	9602	62794;62795	84639;84640;84641	84639			3	
EAAWAITNATSGGSAEQIK	1	Unmodified	1903.9276	0.92756992	1767	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	2	4	57.562	56.762	2;3	6.8428E-83	51445	160511_QHF_FH_JSI11i_1	251.68	235.88			0.91209	0.95952	25.291	11	3	Median	1.2787	1.0605	13.413	2	0	Median	0.77472	0.8991	40.103	3	1	Plateau	0.91559	0.87554	1.7302	2	0	Median	0.88064	0.94135	26.074	4	2	Median	645180000	332760000	312420000	122800000	47568000	75235000	201810000	112560000	89248000	169050000	86136000	82918000	151520000	86499000	65017000	10139	1767	9603	62796;62797;62798;62799;62800;62801;62802;62803;62804;62805;62806;62807	84642;84643;84644;84645;84646;84647;84648;84649;84650;84651;84652;84653;84654;84655;84656;84657;84658	84644			17	
EAAWAITNATSGGTPEQIR	0	Unmodified	1971.965	0.96501806	439;254	O15131;O60684	KPNA5;KPNA6	Importin subunit alpha-6;Importin subunit alpha-7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	2	3	3	61.534	60.763	2;3	3.9389E-138	55392	160511_QHF_FH_JSI12i_1	288.77	264.08			0.92179	1.0333	14.152	9	0	Median	1.3442	1.1396	NaN	1	0	Median	0.82003	0.97941	19.037	2	0	Median	0.94412	0.92799	12.585	3	0	Median	0.79503	0.83061	19.121	3	0	Plateau	743950000	386030000	357920000	65151000	26421000	38729000	161600000	90849000	70747000	331480000	168980000	162510000	185730000	99783000	85943000	10140	254;439	9604	62808;62809;62810;62811;62812;62813;62814;62815;62816	84659;84660;84661;84662;84663;84664;84665;84666;84667;84668;84669;84670;84671;84672;84673	84665			14	
EAAYHPEVAPDVR	0	Unmodified	1452.6997	0.69974224	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	3.1	4	10					1			4	4	3	4	31.547	30.116	2;3	1.5034E-05	25462	160511_QHF_FH_JSI11i_2	136.96	111.3			1.0828	1.0686	19.754	15	5	Median	1.2172	1.0545	9.7776	4	3	Linear	0.85685	1.039	16.761	4	2	Median	1.0906	1.0978	5.3572	3	0	Plateau	1.0183	1.1141	29.937	4	0	Median	1978800000	996650000	982170000	423770000	182390000	241380000	610510000	338670000	271840000	552970000	277120000	275860000	391570000	198470000	193100000	10141	5616	9605	62817;62818;62819;62820;62821;62822;62823;62824;62825;62826;62827;62828;62829;62830;62831	84674;84675;84676;84677;84678;84679;84680;84681;84682;84683;84684;84685;84686;84687;84688;84689;84690;84691;84692;84693;84694;84695;84696;84697;84698	84690			25	
EAAYPNSSLFMFFK	1	Unmodified	1650.7752	0.77521537	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	91.887	83.199	2	6.6762E-07	46519	160513_QHF_FH_JSI11Kac_6	152.85	129.48			1.1815	1.1708	18.44	6	5	Median	1.7459	1.4915	NaN	1	0	Median	0.81628	0.95487	NaN	1	1	Median	1.168	1.0988	4.4873	2	2	Median	1.2943	1.3518	15.821	2	2	Median	399840000	195610000	204230000	71417000	20810000	50607000	105080000	62757000	42328000	154400000	82034000	72366000	68935000	30004000	38932000	10142	3539	9606	62832;62833;62834;62835;62836;62837	84699;84700;84701;84702;84703;84704	84700			5	
EACGVIVELIK	1	Unmodified	1229.669	0.66895938	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									2	1		75.598	75.082	2	0.00044925	65858	160511_QHF_FH_JSI11i_2	70.942	51.838			1.0389	1.126	22.421	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1317	1.3425	24.878	2	2	Median	1.0389	1.0552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106510000	48405000	58106000	0	0	0	49241000	21631000	27610000	57270000	26774000	30497000	0	0	0	10143	5496	9607	62838;62839;62840	84705;84706;84707;84708	84706			4	
EACWTISNITAGNR	0	Unmodified	1591.7413	0.74128948	439;1767	P52294;O60684	KPNA1;KPNA6	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	2					2		1	2	3	2	63.617	60.45	2	0.00022955	52133	160511_QHF_FH_JSI12i_3	86.814	77.381			1.2542	1.3818	35.835	8	4	Median	1.9034	1.6692	NaN	1	1	Median	1.3175	1.5919	19.713	2	1	Median	0.86812	0.82486	13.542	3	1	Median	1.43	1.4491	7.0226	2	1	Median	180920000	79282000	101640000	18278000	5639600	12638000	30184000	12407000	17776000	75592000	39593000	35998000	56869000	21641000	35227000	10144	1767;439	9608	62841;62842;62843;62844;62845;62846;62847;62848	84709;84710;84711;84712;84713;84714;84715	84715			7	
EADAALFSELHRK	1	Unmodified	1485.7576	0.75759147	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.355	43.239	3	0.0011672	38060	160511_QHF_FH_JSI11i_3	51.726	32.759			0.81787	0.80857	7.1569	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92773	0.85055	NaN	1	0	Median	0.72102	0.76867	NaN	1	0	Median	139350000	83362000	55986000	0	0	0	0	0	0	91128000	53646000	37482000	48220000	29717000	18504000	10145	4018	9609	62849;62850	84716;84717	84716			2	
EADDIVNWLK	1	Unmodified	1201.5979	0.59790293	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.718	9	4	2							5	4	4	2	78.486	77.733	2	1.0997E-26	69274	160511_QHF_FH_JSI9i_1	196.88	176.36			0.85641	0.83666	17.497	11	1	Median	0.96639	0.78993	3.5106	3	0	Plateau	0.7142	0.82523	14.623	3	0	Plateau	0.97784	0.94892	33.2	3	1	Plateau	0.82311	0.89002	7.9308	2	0	Median	5129200000	2563100000	2566100000	993870000	473370000	520490000	1465000000	826090000	638860000	1297700000	651220000	646520000	1372600000	612410000	760200000	10146	867	9610	62851;62852;62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863;62864;62865	84718;84719;84720;84721;84722;84723;84724;84725;84726;84727;84728;84729;84730;84731;84732;84733;84734;84735;84736;84737;84738;84739;84740;84741;84742;84743;84744;84745;84746;84747;84748;84749;84750;84751;84752;84753;84754;84755;84756	84744			39	
EADEDAVQFANR	0	Unmodified	1363.6004	0.60042213	3326	Q86UL3	AGPAT6	Glycerol-3-phosphate acyltransferase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	32.786	32.185	2	5.3916E-05	28753	160511_QHF_FH_JSI10i_1	98.254	21.114			1.0957	1.1088	13.349	4	2	Median	1.7175	1.4	NaN	1	1	Median	0.96714	1.101	NaN	1	0	Median	1.0987	1.0304	NaN	1	1	Median	1.0928	1.1167	NaN	1	0	Median	98851000	42657000	56194000	26863000	9128100	17735000	21922000	11158000	10764000	24208000	10118000	14090000	25857000	12253000	13605000	10147	3326	9611	62866;62867;62868;62869;62870	84757;84758;84759;84760;84761;84762;84763	84761			7	
EADERPAGK	1	Unmodified	971.46722	0.46722311	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1			By matching	By MS/MS	1	0	2											1	1	4.6839	4.4634	3	0.011039	2292	160511_QHF_FH_JSI12i_1	45.161	31.391			1.1157	1.1363	5.1338	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.1783	NaN	1	0	Median	1.0454	1.0957	NaN	1	0	Median	891850000	420070000	471780000	0	0	0	0	0	0	437080000	203490000	233600000	454770000	216590000	238180000	10148	5161	9612	62871;62872	84764	84764			1	
EADESLNFEEQILEAAK	1	Unmodified	1934.9109	0.91091681	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	1	2	92.868	92.485	2	1.5385E-137	84037	160511_QHF_FH_JSI10i_1	292.76	271.09			0.71653	0.94688	7.5211	4	0	Linear	1.3412	1.0845	NaN	1	0	Median	0.77802	0.91688	NaN	1	0	Median	0.97526	0.93751	NaN	1	0	Median	0.91598	0.95635	NaN	1	0	Median	334540000	169890000	164650000	50986000	22407000	28579000	142800000	77100000	65697000	61702000	33349000	28353000	79057000	37032000	42025000	10149	5616	9613	62873;62874;62875;62876;62877;62878;62879	84765;84766;84767;84768;84769;84770;84771;84772;84773;84774;84775;84776	84771			12	
EADGDVVNEK	1	Unmodified	1074.4829	0.48293275	3742	Q8TF01	PNISR	Arginine/serine-rich protein PNISR	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.75	4.76	3				1					1		1	2	11.989	11.53	2	4.2896E-05	9397	160511_QHF_FH_JSI12i_1	94.309	71.528			0.81523	0.8125	18.399	3	1	Plateau	0.85862	0.69848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0345	1.0073	NaN	1	1	Median	0.79386	0.8125	NaN	1	0	Median	165250000	80058000	85190000	51945000	24823000	27123000	0	0	0	58591000	27172000	31419000	54711000	28064000	26648000	10150	3742	9614	62880;62881;62882;62883	84777;84778;84779;84780	84778			4	
EADGILKPLPK	2	Unmodified	1179.6863	0.68632401	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.51	5	9	6				2			4	6	6	6	41.741	40.068	2;3	3.5252E-06	34201	160511_QHF_FH_JSI11i_2	114.5	77.021			0.99907	1.017	22.881	21	5	Median	1.0174	0.89003	16.033	3	0	Median	0.92914	1.1263	17.278	6	0	Median	1.0246	0.96687	22.437	6	2	Median	1.0141	1.0798	31.782	6	3	Median	4454500000	2199100000	2255400000	654080000	326760000	327320000	1000400000	515320000	485050000	1747800000	840270000	907550000	1052200000	516790000	535450000	10151	1664	9615	62884;62885;62886;62887;62888;62889;62890;62891;62892;62893;62894;62895;62896;62897;62898;62899;62900;62901;62902;62903;62904;62905	84781;84782;84783;84784;84785;84786;84787;84788;84789;84790;84791;84792;84793;84794;84795;84796;84797;84798;84799;84800;84801;84802;84803;84804;84805;84806;84807;84808;84809;84810;84811;84812	84802			32	
EADGILKPLPK	2	Acetyl (K)	1221.6969	0.69688869	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	67.838	58.495	2	0.0034985	29477	160513_QHF_FH_JSI10Kac_3	75.294	47.552			0.72969	0.802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72969	0.802	NaN	1	0	Median	3771100	1409100	2362000	0	0	0	1343500	0	1343500	0	0	0	2427600	1409100	1018500	10152	1664	9615	62906;62907;62908	84813;84814;84815	84815	1689		3	
EADGSETPEPFAAEAK	1	Unmodified	1647.7264	0.7264105	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	8				4	4				2	4	5	5	45.281	40.339	2;3	2.6244E-138	35788	160511_QHF_FH_JSI9i_1	295.32	271.57			0.90302	0.95938	36.687	16	4	Median	1.2244	1.0012	17.719	2	0	Median	0.83848	0.99172	27.541	4	1	Median	0.96428	0.94699	56.426	5	1	Median	0.87234	0.89786	30.518	5	2	Median	3480700000	1741700000	1738900000	686530000	308840000	377690000	910490000	498450000	412050000	950660000	493450000	457220000	932970000	440990000	491980000	10153	3213	9616	62909;62910;62911;62912;62913;62914;62915;62916;62917;62918;62919;62920;62921;62922;62923;62924	84816;84817;84818;84819;84820;84821;84822;84823;84824;84825;84826;84827;84828;84829;84830;84831;84832;84833;84834;84835;84836;84837;84838	84834			22	
EADGSLQPLPQR	0	Unmodified	1309.6626	0.66262845	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	32.809	31.889	2	2.0981E-06	28653	160511_QHF_FH_JSI12i_1	125.75	99.074			0.71751	0.65578	69.173	2	1	Median	1.3128	1.0695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39216	0.4021	NaN	1	0	Median	126060000	69736000	56329000	55823000	23652000	32171000	0	0	0	0	0	0	70242000	46084000	24158000	10154	2907	9617	62925;62926	84839;84840;84841	84839			3	
EADIDGDGQVNYEEFVQMMTAK	1	Unmodified	2489.0727	0.072655535	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	101.35	101.27	2;3	6.2787E-268	91813	160511_QHF_FH_JSI12i_1	354.12	336.72			0.73598	0.84044	18.096	5	0	Median	NaN	NaN	NaN	0	0	Median	0.67142	0.78827	13.561	2	0	Median	0.72634	0.7064	NaN	1	0	Median	0.93888	0.96322	19.284	2	0	Median	457610000	251580000	206030000	0	0	0	200300000	121060000	79245000	89999000	47242000	42758000	167310000	83275000	84032000	10155	958	9618	62927;62928;62929;62930;62931	84842;84843;84844	84843			2	
EADIVIK	1	Unmodified	786.44872	0.4487195	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	28.396	27.955	2	0.043975	24794	160511_QHF_FH_JSI10i_1	48.787	13.538			0.97241	1.0481	151.46	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31612	0.35915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9912	3.0587	NaN	1	1	Median	57602000	30397000	27205000	0	0	0	31433000	20881000	10552000	0	0	0	26169000	9516000	16653000	10156	4753	9619	62932;62933	84845;84846	84846			2	
EADLAAQEEAAK	1	Unmodified	1244.5885	0.58846046	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.527	21.211	2	7.5194E-05	18313	160511_QHF_FH_JSI12i_1	94.363	38.642			0.8317	0.83884	21.83	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99516	0.97885	NaN	1	0	Median	0.69508	0.71885	NaN	1	0	Median	13273000000	6767400000	6505800000	0	0	0	0	0	0	6156700000	3037300000	3119400000	7116500000	3730100000	3386500000	10157	5575	9620	62934;62935	84847;84848	84848			2	
EADLAAQEEAAKK	2	Unmodified	1372.6834	0.68342347	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	1				By MS/MS	1	0	3												3	18.3	17.831	2;3	0.00019574	15371	160511_QHF_FH_JSI12i_1	77.776	65.507			1.4906	1.5229	113.78	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4906	1.5229	113.78	3	3	Median	140650000	66593000	74054000	0	0	0	0	0	0	0	0	0	140650000	66593000	74054000	10158	5575	9621	62936;62937;62938	84849;84850;84851	84850			3	
EADLDVATITK	1	Unmodified	1174.6081	0.60813326	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	50.169	49.543	2	5.6125E-06	44662	160511_QHF_FH_JSI10i_1	123.75	76.667			0.88061	0.82001	16.045	5	5	Median	0.96478	0.79992	NaN	1	1	Median	0.76948	0.89714	17.932	2	2	Median	1.1517	1.1211	NaN	1	1	Median	0.79644	0.82001	NaN	1	1	Median	853070000	457960000	395110000	200440000	124960000	75470000	311130000	173950000	137180000	169520000	70018000	99500000	171990000	89026000	82963000	10159	1895	9622	62939;62940;62941;62942;62943	84852;84853;84854;84855;84856	84855			5	
EADLPMTAASHSSAFTPVTAAASPVSLPR	0	Unmodified	2881.428	0.42800741	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	85.033	84.277	3	6.5739E-12	74245	160511_QHF_FH_JSI11i_2	81.292	74.26			1.4418	1.5044	35.581	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.76526	0.92574	NaN	1	1	Median	1.5432	1.5542	NaN	1	0	Median	0.71031	0.78622	NaN	1	1	Median	48422000	26505000	21918000	0	0	0	14873000	10437000	4435900	24896000	10419000	14476000	8653400	5647800	3005500	10160	5620	9623	62944;62945;62946;62947	84857;84858;84859;84860;84861	84860			5	
EADLVFISVNTPTK	1	Unmodified	1532.8086	0.80862399	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			77.391	77.224	2	0.00020167	69933	160511_QHF_FH_JSI10i_1	106.01	70.593			0.54805	0.61565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54805	0.61565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33421000	22077000	11345000	0	0	0	33421000	22077000	11345000	0	0	0	0	0	0	10161	440	9624	62948	84862	84862			1	
EADLVIFQFPLYWFSVPAILK	1	Unmodified	2495.3505	0.35045601	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	103.7	95.796	2;3	6.5508E-47	57920	160513_QHF_FH_JSI10Kac_6	233.02	200.4			0.93635	1.0069	33.276	5	1	Median	0.81298	0.69015	NaN	1	0	Median	1.0674	1.2741	19.53	2	0	Median	0.67269	0.66504	NaN	1	1	Median	0.96471	1.0069	NaN	1	0	Median	1169500000	633840000	535620000	43133000	19760000	23373000	1081900000	591590000	490300000	7968900	4370300	3598500	36474000	18119000	18355000	10162	1090	9625	62949;62950;62951;62952;62953;62954	84863;84864;84865;84866;84867;84868;84869;84870;84871;84872	84871			10	
EADPDDHYQPGEGTQATADK	1	Unmodified	2143.893	0.89303491	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	21.005	20.49	3	1.785E-11	17713	160511_QHF_FH_JSI10i_1	131.65	115.71			1.0248	1.076	11.452	4	0	Linear	1.0958	0.88978	NaN	1	0	Median	0.97138	1.1228	NaN	1	0	Median	1.0813	1.0643	NaN	1	0	Median	0.88595	0.91119	NaN	1	0	Median	337440000	182700000	154740000	55354000	30397000	24956000	98761000	54239000	44522000	94526000	49581000	44944000	88800000	48478000	40322000	10163	2549	9626	62955;62956;62957;62958	84873;84874;84875;84876	84874			4	
EADPEDGKPVMDK	2	Unmodified	1429.6395	0.63950975	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	5.06	10					3				3	3	4	3	19.68	17.982	2;3	5.2434E-05	15160	160511_QHF_FH_JSI9i_1	79.875	74.721			0.77467	0.80064	38.331	12	6	Median	1.2413	1.0112	40.482	3	2	Median	0.52828	0.63842	41.993	3	0	Plateau	0.85498	0.84296	54.222	4	4	Median	0.77098	0.80064	2.3825	2	0	Median	2831300000	1571000000	1260300000	629390000	319170000	310220000	765270000	437840000	327430000	712870000	433570000	279300000	723790000	380460000	343340000	10164	1181	9627	62959;62960;62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971	84877;84878;84879;84880;84881;84882;84883;84884;84885;84886;84887;84888;84889;84890;84891;84892;84893;84894;84895	84891			19	
EADPEDGKPVMDK	2	Oxidation (M)	1445.6344	0.63442437	1181	P20810	CAST	Calpastatin	yes	yes	0	0	1	1	By matching	By MS/MS	By MS/MS	By matching	3	4.47	5					1				1	2	2	1	12.917	11.113	3	0.01302	7788	160511_QHF_FH_JSI11i_1	41.996	20.645			0.98178	0.83836	90.226	5	1	Median	1.0255	0.83836	NaN	1	0	Median	1.3741	1.6344	163.1	2	1	Median	0.98178	0.95989	NaN	1	0	Median	0.68242	0.7108	NaN	1	0	Median	275720000	137270000	138450000	54795000	26113000	28682000	149740000	71154000	78586000	7691000	3694500	3996600	63491000	36306000	27185000	10165	1181	9627	62972;62973;62974;62975;62976;62977	84896;84897;84898;84899;84900	84896		810	5	
EADYVAQATR	0	Unmodified	1122.5306	0.53055165	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		20.714	20.191	2	0.0025721	17305	160511_QHF_FH_JSI11i_1	59.067	40.285			1.2354	1.3762	44.797	3	1	Plateau	0.77339	0.62805	NaN	1	1	Median	1.0113	1.1904	NaN	1	0	Median	1.5093	1.489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	578350000	323640000	254710000	182100000	107790000	74313000	193390000	118240000	75148000	202860000	97610000	105250000	0	0	0	10166	4965	9628	62978;62979;62980	84901;84902	84901			2	
EAEAAFLNVYK	1	Unmodified	1253.6292	0.62920306	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0			By MS/MS		1	0	1											1		61.019	60.587	2	0.00014429	54989	160511_QHF_FH_JSI11i_1	89.029	78.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10167	1489;2481	9629	62981	84903	84903			1	
EAEAAIYHLQLFEELR	0	Unmodified	1930.9789	0.97887721	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	85.301	77.172	2;3	1.2404E-27	43796	160513_QHF_FH_JSI10Kac_6	151.07	118.45			0.80997	0.77632	56.56	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61335	0.73614	NaN	1	0	Median	0.80997	0.77632	NaN	1	0	Median	1.9134	2.0113	NaN	1	1	Median	274740000	147870000	126870000	0	0	0	93386000	60510000	32876000	111630000	66849000	44783000	69727000	20515000	49213000	10168	1055	9630	62982;62983;62984	84904;84905;84906	84906			1	
EAEAAIYHLQLFEELRR	0	Unmodified	2087.08	0.079988241	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.53		19	28						7	15	22	11	6	83.808	82.203	2;3;4	1.5524E-146	40676	160513_QHF_FH_JSI10Kac_6	332.99	286.11			0.99105	0.99493	27.786	54	15	Median	1.0928	0.89542	21.645	15	4	Median	0.83786	0.9794	31.086	22	6	Median	1.111	1.0721	21.901	11	4	Median	0.95481	0.99816	35.903	6	1	Median	14591000000	7551900000	7039100000	1586900000	751840000	835080000	7720900000	4300300000	3420600000	3114600000	1323600000	1791100000	2168500000	1176200000	992340000	10169	1055	9631	62985;62986;62987;62988;62989;62990;62991;62992;62993;62994;62995;62996;62997;62998;62999;63000;63001;63002;63003;63004;63005;63006;63007;63008;63009;63010;63011;63012;63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026;63027;63028;63029;63030;63031;63032;63033;63034;63035;63036;63037;63038	84907;84908;84909;84910;84911;84912;84913;84914;84915;84916;84917;84918;84919;84920;84921;84922;84923;84924;84925;84926;84927;84928;84929;84930;84931;84932;84933;84934;84935;84936;84937;84938;84939;84940;84941;84942;84943;84944;84945;84946;84947;84948;84949;84950;84951;84952;84953;84954;84955;84956;84957;84958;84959;84960;84961;84962;84963;84964;84965;84966;84967;84968;84969;84970;84971;84972;84973;84974;84975;84976;84977;84978;84979;84980	84979			72	
EAEAASIK	1	Unmodified	817.41815	0.41814765	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	10.273	7.1797	2	0.0005865	4923	160513_QHF_FH_JSI11Kac_3	110.12	39.203			0.90669	1.0588	15.279	5	0	Median	NaN	NaN	NaN	0	0	Median	0.857	1.0126	7.9872	2	0	Median	0.92827	0.91098	21.264	2	0	Median	1.0983	1.1679	NaN	1	0	Median	2670400000	1240300000	1430100000	0	0	0	929130000	479310000	449820000	883860000	364960000	518900000	857420000	396070000	461350000	10170	1139	9632	63039;63040;63041;63042;63043	84981;84982;84983;84984;84985;84986;84987	84984			7	
EAEAMALLAEAER	0	Unmodified	1402.6762	0.67622961	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		74.343	73.866	2	3.3743E-12	64790	160511_QHF_FH_JSI11i_2	117.98	96.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10171	1838	9633	63044;63045	84988;84989	84989			2	
EAEAMALLAEAERK	1	Unmodified	1530.7712	0.77119262	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							2	2	2	4	68.451	67.573	2;3	5.3609E-06	59120	160511_QHF_FH_JSI11i_2	124.16	85.157			1.0633	1.0734	36.364	9	4	Median	1.34	1.1409	NaN	1	0	Median	1.2588	1.5319	50.309	2	1	Median	1.2683	1.3026	28.687	2	1	Median	0.89948	0.96273	30.498	4	2	Median	1043600000	577700000	465910000	170210000	82765000	87442000	269340000	135560000	133780000	281440000	158730000	122710000	322630000	200650000	121980000	10172	1838	9634	63046;63047;63048;63049;63050;63051;63052;63053;63054;63055	84990;84991;84992;84993;84994;84995;84996;84997;84998;84999;85000;85001;85002;85003;85004;85005	84999			16	
EAEDDDTGPEEGSPPK	1	Unmodified	1671.6748	0.67476886	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.262	14.818	2	2.0403E-17	12535	160511_QHF_FH_JSI12i_1	128.54	118.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10173	340	9635	63056	85006	85006			1	
EAEDELSAR	0	Unmodified	1018.4567	0.456718	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	15.434	12.067	2	5.4287E-08	10443	160511_QHF_FH_JSI9i_1	143.28	97.269			1.0324	1.0886	6.9768	7	0	Median	1.3852	1.1223	NaN	1	0	Median	0.86431	1.0169	9.64	2	0	Median	1.1318	1.1134	3.4441	2	0	Median	0.9788	1.0394	8.1084	2	0	Median	1674700000	831100000	843610000	413180000	196870000	216320000	412360000	224540000	187830000	419030000	197380000	221660000	430130000	212320000	217810000	10174	1459	9636	63057;63058;63059;63060;63061;63062;63063	85007;85008;85009;85010;85011;85012;85013;85014;85015;85016;85017;85018;85019	85016			13	
EAEDGIIAYDDCGVK	1	Unmodified	1653.7192	0.71921663	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.991	49.491	2	5.7375E-07	45023	160511_QHF_FH_JSI12i_1	138.89	120.63			2.1653	2.1766	52.818	3	3	Plateau	NaN	NaN	NaN	0	0	Median	3.4722	4.0276	NaN	1	1	Median	2.1653	2.097	NaN	1	1	Median	5.6595	5.9667	NaN	1	1	Median	286590000	60480000	226110000	0	0	0	103330000	19496000	83838000	78662000	26282000	52380000	104590000	14703000	89892000	10175	543	9637	63064;63065;63066	85020;85021;85022	85021			3	
EAEDSLRR	0	Unmodified	974.47812	0.47812215	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.07	3.37	2	7	4					1		3	3	5	3	6.4868	5.5966	2;3	2.4622E-05	3899	160511_QHF_FH_JSI11i_2	138.83	64.851			1.0257	1.0647	14.969	14	0	Median	1.265	1.0871	10.346	3	0	Median	0.96729	1.1756	22.344	3	0	Plateau	1.0985	1.0827	7.1328	5	0	Median	0.88934	0.97749	19.076	3	0	Median	2045100000	1057300000	987840000	294340000	149130000	145200000	358190000	180620000	177560000	909250000	436520000	472730000	483350000	291010000	192340000	10176	375	9638	63067;63068;63069;63070;63071;63072;63073;63074;63075;63076;63077;63078;63079;63080	85023;85024;85025;85026;85027;85028;85029;85030;85031;85032;85033;85034	85028			11	
EAEDTQVFGDLPRPR	0	Unmodified	1728.8431	0.84311201	3978	Q96B36	AKT1S1	Proline-rich AKT1 substrate 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	55.62	54.97	3	3.9183E-05	48794	160511_QHF_FH_JSI11i_3	87.566	76.712			1.2307	1.2639	26.009	7	3	Median	1.637	1.394	NaN	1	0	Median	1.0918	1.3495	NaN	1	0	Median	1.2854	1.1849	6.6747	3	2	Plateau	1.564	1.6609	50.812	2	1	Median	918870000	409060000	509810000	138550000	49260000	89289000	182450000	80948000	101510000	445470000	205940000	239530000	152400000	72907000	79494000	10177	3978	9639	63081;63082;63083;63084;63085;63086;63087	85035;85036;85037;85038;85039;85040;85041;85042	85036			8	
EAEEETTNDNGVLVLEPARK	1	Unmodified	2213.0812	0.081170032	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								3	2	1	3	48.276	47.56	2;3	3.4593E-25	43174	160511_QHF_FH_JSI12i_1	170.06	155.59			0.96901	0.87302	22.841	7	3	Median	0.96901	0.78323	NaN	1	0	Median	0.68601	0.83653	1.8879	2	1	Median	1.077	1.055	NaN	1	0	Median	1.0594	1.1196	26.774	3	2	Median	1113400000	550910000	562490000	180290000	89181000	91108000	320090000	188850000	131240000	254710000	102150000	152560000	358300000	170720000	187580000	10178	1554	9640	63088;63089;63090;63091;63092;63093;63094;63095;63096	85043;85044;85045;85046;85047;85048;85049;85050;85051;85052;85053	85045			11	
EAEEEYRNSMPASSFQQQK	1	Unmodified	2257.991	0.99097482	4910	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	36.604	35.771	3	9.0171E-11	30527	160511_QHF_FH_JSI11i_2	126.88	118.6			1.1684	1.2216	25.854	4	2	Median	NaN	NaN	NaN	0	0	Median	0.62406	0.78127	NaN	1	1	Median	1.2968	1.3024	NaN	1	1	Median	1.1754	1.2637	13.84	2	0	Median	110710000	61854000	48858000	0	0	0	14078000	10813000	3264600	28564000	14023000	14541000	68069000	37018000	31052000	10179	4910	9641	63097;63098;63099;63100	85054;85055;85056;85057;85058;85059;85060	85058			7	
EAEEPGPDSENSQENPPLR	0	Unmodified	2093.9138	0.91377035	3810	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.136	30.563	2	0.00029859	27495	160511_QHF_FH_JSI12i_1	66.004	57.491			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10180	3810	9642	63101	85061	85061			1	
EAEESLQQQQQEQEEALK	1	Unmodified	2143.9869	0.9869353	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	36.182	35.59	2;3	4.3847E-29	32245	160511_QHF_FH_JSI12i_1	224.42	203.56			0.26438	0.27634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26438	0.27634	NaN	1	1	Median	20221000	16303000	3917900	0	0	0	0	0	0	0	0	0	20221000	16303000	3917900	10181	2841	9643	63102;63103;63104;63105;63106	85062;85063;85064;85065;85066	85062			5	
EAEEVYR	0	Unmodified	894.40831	0.40831125	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.03	10.646	2	0.011328	8317	160511_QHF_FH_JSI11i_1	71.134	51.695			0.93629	0.91675	9.5789	4	0	Median	0.98501	0.7924	NaN	1	0	Median	0.75213	0.89633	NaN	1	0	Median	1.0238	0.99282	NaN	1	0	Median	0.88999	0.93765	NaN	1	0	Median	1034400000	571050000	463340000	240300000	142620000	97685000	296800000	188170000	108630000	272950000	132140000	140810000	224330000	108120000	116210000	10182	5562	9644	63107;63108;63109;63110	85067;85068	85067			2	
EAEFTKSIAK	2	Acetyl (K)	1164.6027	0.60265396	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						2	1				1	1	1	49.587	39.884	2	0.010836	22164	160513_QHF_FH_JSI11Kac_3	59.426	36.686			0.61905	0.67037	22.023	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.67703	0.80563	NaN	1	0	Median	0.56604	0.55782	NaN	1	0	Median	0.75918	0.82713	NaN	1	0	Median	49977000	26586000	23391000	0	0	0	19454000	10274000	9180200	20655000	11104000	9551200	9867500	5208100	4659500	10183	2596	9645	63111;63112;63113	85069;85070;85071	85069	2573		3	
EAEGAPQVEAGK	1	Unmodified	1184.5673	0.56733108	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	18.398	15.079	2	2.4892E-07	12562	160511_QHF_FH_JSI9i_1	161.51	136.74			1.0975	1.049	7.0685	7	1	Median	1.1977	0.97596	NaN	1	0	Median	0.84677	0.99902	9.1473	2	1	Median	1.1048	1.0564	0.99931	2	0	Median	1.0358	1.0791	10.604	2	0	Median	1178700000	610530000	568210000	277330000	123970000	153360000	294360000	162590000	131780000	291160000	149290000	141870000	315880000	174690000	141200000	10184	2233	9646	63114;63115;63116;63117;63118;63119;63120	85072;85073;85074;85075;85076;85077;85078;85079;85080;85081;85082;85083;85084	85082			13	
EAEGEQFVEEALEK	1	Unmodified	1606.7362	0.7362469	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		74.019	73.398	2	0.00041341	65355	160511_QHF_FH_JSI9i_1	97.69	81.552			1.1058	1.0033	56.987	2	2	Median	0.78679	0.67055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5542	1.5012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105970000	47845000	58122000	28063000	18866000	9196600	0	0	0	77904000	28979000	48926000	0	0	0	10185	213	9647	63121;63122	85085;85086	85086			2	
EAEGGAATAGPSR	0	Unmodified	1172.5422	0.54217896	5199	Q9P253	VPS18	Vacuolar protein sorting-associated protein 18 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.9513	7.2671	2	6.995E-05	4848	160511_QHF_FH_JSI9i_1	103.21	77.108			0.96499	0.786	NaN	1	0	Median	0.96499	0.786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48216000	24120000	24096000	48216000	24120000	24096000	0	0	0	0	0	0	0	0	0	10186	5199	9648	63123	85087	85087			1	
EAEGQLQK	1	Unmodified	901.45051	0.45051041	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		7.4841	7.367	2	0.00077981	5206	160511_QHF_FH_JSI10i_1	92.47	58.92			1.0452	1.0136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0452	1.0136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	209310000	91653000	117660000	0	0	0	0	0	0	209310000	91653000	117660000	0	0	0	10187	2636	9649	63124;63125	85088;85089	85089			2	
EAEGSSAEYK	1	Unmodified	1069.4564	0.45638365	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	2	3	1	7.6637	4.335	2	8.0557E-19	4786	160511_QHF_FH_JSI10i_1	172.23	158.08			1.0138	0.90747	18.771	7	1	Median	1.0644	0.86986	NaN	1	1	Median	0.88	1.0471	20.238	2	0	Median	1.3294	0.86524	24.746	3	0	Plateau	1.1168	1.1747	NaN	1	0	Median	622240000	308710000	313520000	127580000	52109000	75472000	180120000	97704000	82416000	175380000	88462000	86920000	139160000	70440000	68716000	10188	1649	9650	63126;63127;63128;63129;63130;63131;63132	85090;85091;85092;85093;85094;85095;85096;85097	85095			8	
EAEGSSAEYKK	2	Unmodified	1197.5513	0.55134667	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.24	4.42	10	8					3			5	5	4	7	8.6707	7.1126	2;3	1.4931E-30	3441	160511_QHF_FH_JSI10i_1	196.52	179.28			0.94929	0.92954	34.603	21	0	Median	1.1196	0.93383	25.272	5	0	Median	0.94929	1.1041	34.725	5	0	Median	0.89332	0.89356	24.094	4	0	Median	0.84278	0.89075	47.538	7	0	Median	4584000000	2103400000	2480600000	809530000	381370000	428160000	1110000000	507460000	602540000	1559300000	725960000	833310000	1105200000	488600000	616570000	10189	1649	9651	63133;63134;63135;63136;63137;63138;63139;63140;63141;63142;63143;63144;63145;63146;63147;63148;63149;63150;63151;63152;63153	85098;85099;85100;85101;85102;85103;85104;85105;85106;85107;85108;85109;85110;85111;85112;85113;85114;85115;85116;85117;85118;85119;85120;85121;85122;85123;85124;85125;85126;85127	85109			30	
EAEGSSAEYKK	2	Acetyl (K)	1239.5619	0.56191135	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		16.85	9.4533	2	0.0086015	7227	160513_QHF_FH_JSI11Kac_3	67.726	58.512			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3363000	3363000	0	0	0	0	0	0	0	3363000	3363000	0	0	0	0	10190	1649	9651	63154	85128	85128	1659		1	
EAEILEVLR	0	Unmodified	1070.5972	0.59717465	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	71.904	71.024	2	0.00021314	63098	160511_QHF_FH_JSI10i_2	101.25	74.796			0.54275	0.54345	30.051	5	5	Median	0.77977	0.66714	38.11	2	2	Median	0.31114	0.37815	NaN	1	1	Median	0.54275	0.54345	NaN	1	1	Median	0.52392	0.56911	NaN	1	1	Median	204050000	123100000	80949000	82445000	45220000	37225000	37360000	26069000	11292000	53056000	32420000	20636000	31188000	19391000	11796000	10191	1456	9652	63155;63156;63157;63158;63159	85129;85130;85131;85132;85133	85133			5	
EAEILHKAR	1	Acetyl (K)	1107.6037	0.60365701	324	O43353	RIPK2	Receptor-interacting serine/threonine-protein kinase 2	yes	yes	1	0	0	1		By MS/MS	By matching		15	0								2			1	1		32.51	23.003	3	0.038899	12629	160513_QHF_FH_JSI10Kac_5	36.318	27.624			1.2542	1.3519	1.0561	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1348	1.3418	NaN	1	0	Median	1.3861	1.362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8513900	3453400	5060500	0	0	0	3581500	1636700	1944800	4932400	1816700	3115700	0	0	0	10192	324	9653	63160;63161	85134	85134			0	
EAEILSVLSHR	0	Unmodified	1252.6776	0.67755023	5129	Q9NYL2	ZAK	Mitogen-activated protein kinase kinase kinase MLT	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	62.17	61.902	3	2.3996E-05	53298	160511_QHF_FH_JSI12i_3	86.923	72.491			0.91486	0.90596	31.945	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7589	0.72278	NaN	1	0	Median	1.1029	1.1356	NaN	1	0	Median	136510000	72293000	64213000	0	0	0	0	0	0	71755000	41159000	30596000	64752000	31134000	33617000	10193	5129	9654	63162;63163;63164;63165;63166;63167	85135;85136;85137;85138;85139;85140;85141	85141			7	
EAEIYQTVMLR	0	Unmodified	1351.6806	0.6805867	1462	P36897;Q8NER5;P36896	TGFBR1;ACVR1C;ACVR1B	TGF-beta receptor type-1;Activin receptor type-1C;Activin receptor type-1B	yes	no	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	62.952	62.483	2	0.012917	57059	160511_QHF_FH_JSI12i_1	44.309	33.158			0.61321	0.68961	70.282	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73034	0.82933	26.092	2	1	Median	NaN	NaN	NaN	0	0	Median	0.2468	0.25621	NaN	1	0	Median	110440000	75768000	34670000	0	0	0	62199000	37186000	25013000	0	0	0	48239000	38582000	9656800	10194	1462	9655	63168;63169;63170	85142;85143	85142			2	
EAEKPAVPETAGIK	2	Acetyl (K)	1480.7773	0.77732386	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					2	1	1	56.208	46.827	2	0.0017485	21152	160513_QHF_FH_JSI12Kac_2	75.819	46.076			0.92368	0.94876	9.832	4	0	Median	NaN	NaN	NaN	0	0	Median	0.84075	0.98484	13.699	2	0	Median	0.92771	0.88446	NaN	1	0	Median	0.95931	1.007	NaN	1	0	Median	13669000	6775800	6893400	0	0	0	6186600	3028100	3158600	1392400	665230	727210	6090100	3082500	3007700	10195	4900	9656	63171;63172;63173;63174	85144;85145;85146;85147	85147	3260		4	
EAELDVNEELDK	1	Unmodified	1402.6464	0.64636926	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				48.522	47.3	2	9.2904E-15	42077	160511_QHF_FH_JSI9i_1	141.08	99.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10196	1553	9657	63175	85148	85148			1	
EAELENSGLALYDGK	1	Unmodified	1607.7679	0.76788138	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	60.014	59.36	2	2.8775E-06	53986	160511_QHF_FH_JSI12i_1	121.66	86.144			0.72067	0.73554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72067	0.73554	NaN	1	1	Median	66172000	38009000	28162000	0	0	0	0	0	0	0	0	0	66172000	38009000	28162000	10197	3086	9658	63176	85149	85149			1	
EAELGAK	1	Unmodified	716.37047	0.37046918	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		6.9648	-0.36503	2	0.053109	2651	160513_QHF_FH_JSI11Kac_3	50.539	0			0.92881	0.99395	4.3977	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88265	1.0253	NaN	1	0	Median	0.97739	0.96352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22023000	11374000	10649000	0	0	0	6273000	2997400	3275600	15750000	8376500	7373600	0	0	0	10198	2385	9659	63177;63178	85150	85150			1	
EAELLEPLMPAIR	0	Unmodified	1480.796	0.79595081	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.408	1	10	1							4	2	4	2	92.178	91.667	2;3	1.0591E-12	80537	160511_QHF_FH_JSI11i_2	126.39	90.428			0.81807	0.8374	33.677	8	5	Median	1.3101	1.1329	36.604	2	1	Median	0.49598	0.60148	40.654	2	2	Median	0.85971	0.84332	14.267	2	1	Median	0.72425	0.79031	26.25	2	1	Median	293140000	158660000	134490000	65441000	32175000	33266000	68172000	42315000	25857000	92105000	46820000	45285000	67427000	37345000	30081000	10199	1804	9660	63179;63180;63181;63182;63183;63184;63185;63186;63187;63188;63189;63190	85151;85152;85153;85154;85155;85156;85157;85158;85159;85160;85161;85162;85163;85164;85165;85166	85164			16	
EAELLTSAEK	1	Unmodified	1089.5554	0.55536941	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.266	31.031	2	0.012872	27799	160511_QHF_FH_JSI11i_1	54.539	30.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11371000	11371000	0	0	0	0	0	0	0	11371000	11371000	0	0	0	0	10200	429	9661	63191	85167	85167			1	
EAELNAK	1	Unmodified	773.39193	0.3919329	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5	5.66	4					2				1	2	2	1	8.4477	5.7663	2	0.012569	5492	160511_QHF_FH_JSI10i_1	69.176	16.013			1.157	1.1886	11.758	6	0	Median	1.4488	1.1735	NaN	1	0	Median	0.95903	1.1317	15.512	2	0	Median	1.157	1.1238	9.7291	2	0	Median	1.3233	1.3924	NaN	1	0	Median	1920500000	872140000	1048300000	410540000	166360000	244180000	527230000	260650000	266580000	536960000	243700000	293250000	445740000	201420000	244310000	10201	2195	9662	63192;63193;63194;63195;63196;63197	85168;85169;85170;85171;85172	85171			5	
EAELQAVLHPEFHIQFLGGK	1	Unmodified	2262.1797	0.17970229	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	95.067	95.07	4	3.2005E-10	82345	160511_QHF_FH_JSI12i_3	116.21	107.99			1.1843	1.1464	19.243	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4175	1.3135	NaN	1	0	Median	0.98949	1.0006	NaN	1	0	Median	66423000	32008000	34415000	0	0	0	0	0	0	15034000	6019100	9015300	51389000	25989000	25400000	10202	3955	9663	63198;63199	85173;85174;85175	85174			3	
EAENIPVHLPNIQALK	1	Unmodified	1784.9785	0.97848328	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.211	77.491	3	0.032319	68985	160511_QHF_FH_JSI10i_2	41.088	30.621			0.94034	1.1232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94034	1.1232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15160000	9711800	5448100	0	0	0	15160000	9711800	5448100	0	0	0	0	0	0	10203	1515	9664	63200	85176	85176			0	
EAENLMQEEHDNQANVR	0	Unmodified	2025.881	0.88103044	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	28.439	27.764	3	2.2508E-05	23936	160511_QHF_FH_JSI9i_2	80.638	73.127			1.1047	1.032	25.6	7	2	Median	1.185	1.032	NaN	1	0	Median	0.72779	0.86281	15.541	2	1	Median	1.1345	1.1134	1.8868	2	0	Median	1.2532	1.3568	39.988	2	1	Median	256220000	128600000	127630000	41914000	21811000	20102000	69366000	37361000	32005000	85159000	42421000	42738000	59782000	27003000	32780000	10204	942	9665	63201;63202;63203;63204;63205;63206;63207	85177;85178;85179;85180;85181;85182;85183;85184	85182			7	
EAENMAQR	0	Unmodified	947.41308	0.41307905	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.2359	5.8898	2	0.0089471	3904	160511_QHF_FH_JSI12i_1	56.721	19.562			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10205	5229	9666	63208	85185	85185			1	
EAENPEGEEK	1	Unmodified	1130.4728	0.472762	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	7.3795	4.7436	2	4.2425E-06	4587	160511_QHF_FH_JSI12i_1	109.88	99.012			0.68486	0.72407	31.344	6	0	Median	1.1146	0.90916	NaN	1	0	Median	0.97421	1.1595	NaN	1	0	Median	0.55227	0.52274	7.5338	2	0	Median	0.68486	0.72407	0.88779	2	0	Median	378130000	207700000	170420000	101850000	46552000	55294000	55141000	23380000	31761000	72880000	46439000	26441000	148260000	91332000	56928000	10206	1758	9667	63209;63210;63211;63212;63213;63214	85186;85187;85188;85189;85190;85191;85192	85188			7	
EAEQENEARK	1	Unmodified	1202.5527	0.55274365	3406	Q8IVF7	FMNL3	Formin-like protein 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		6.7358	6.4162	3	0.02743	4346	160511_QHF_FH_JSI9i_2	25.126	19.091			1.3792	1.2883	9.4963	2	0	Median	1.5974	1.3778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1909	1.2046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	316730000	129260000	187480000	182890000	80004000	102890000	0	0	0	133840000	49254000	84589000	0	0	0	10207	3406	9668	63215;63216	85193;85194;85195	85194			3	
EAEQMGNELER	0	Unmodified	1304.5667	0.56667916	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.279	22.74	2	1.1347E-37	19885	160511_QHF_FH_JSI10i_1	199.68	154.6			0.84186	0.89101	8.7721	4	0	Median	1.1437	0.94234	NaN	1	0	Median	0.72598	0.84975	NaN	1	0	Median	0.79362	0.78267	NaN	1	0	Median	0.89304	0.93427	NaN	1	0	Median	401510000	217450000	184070000	84879000	37268000	47611000	90978000	58348000	32630000	101280000	49667000	51617000	124370000	72165000	52207000	10208	2587	9669	63217;63218;63219;63220	85196;85197;85198;85199;85200;85201;85202;85203	85201			8	
EAERDVSLTSLAK	1	Unmodified	1417.7413	0.7412727	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.434	39.473	3	0.00014615	33814	160511_QHF_FH_JSI11i_2	58.079	36.521			0.71946	0.54953	36.582	4	2	Linear	1.4732	1.2369	NaN	1	1	Median	0.54298	0.66934	NaN	1	1	Median	0.56895	0.56504	NaN	1	0	Median	0.90979	1.034	NaN	1	0	Median	271110000	163390000	107720000	50070000	24253000	25817000	82059000	52672000	29387000	87749000	57960000	29789000	51229000	28504000	22726000	10209	1892	9670	63221;63222;63223;63224	85204;85205;85206;85207	85206			4	
EAEREGATEEAVR	0	Unmodified	1445.6746	0.6746497	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	9.243	8.7807	2;3	5.4578E-05	6417	160511_QHF_FH_JSI12i_2	78.814	63.938			0.86127	0.87458	11.267	7	0	Median	1.1549	0.97776	10.002	2	0	Median	0.90119	1.1136	NaN	1	0	Median	0.85133	0.85695	2.8805	2	0	Median	0.75778	0.85369	1.5011	2	0	Median	424640000	219770000	204870000	106360000	49787000	56574000	48683000	21965000	26718000	194730000	103110000	91618000	74864000	44903000	29962000	10210	4456	9671	63225;63226;63227;63228;63229;63230;63231;63232	85208;85209;85210;85211;85212;85213;85214;85215;85216;85217	85210			10	
EAERELQAK	1	Unmodified	1072.5513	0.55128709	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		8.0618	7.7263	3	0.013768	5089	160511_QHF_FH_JSI11i_2	39.622	22.846			1.1078	1.2273	19.295	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89043	1.0708	NaN	1	0	Median	1.3781	1.4067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	244880000	128360000	116520000	0	0	0	147130000	89283000	57849000	97746000	39076000	58670000	0	0	0	10211	5192	9672	63233;63234	85218;85219	85219			2	
EAESASENEEIDISK	1	Unmodified	1649.7268	0.72680443	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	32.1	31.524	2	3.4826E-08	28353	160511_QHF_FH_JSI11i_1	100.19	87.611			1.296	1.2857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.296	1.2857	NaN	1	1	Median	13949000	4916300	9032500	0	0	0	0	0	0	0	0	0	13949000	4916300	9032500	10212	625	9673	63235;63236	85220;85221	85220			2	
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	1	Unmodified	3310.5268	0.52681154	2824	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.706	3	8	6							3	4	6	4	93.269	92.975	3;4	1.0324E-67	80648	160511_QHF_FH_JSI12i_3	200.43	0			0.92863	0.95519	13.186	16	4	Median	0.89132	0.77298	3.7099	2	0	Median	0.83809	0.99261	5.8142	4	1	Median	0.94919	0.9325	10.601	6	2	Median	1.0374	1.0432	12.503	4	1	Median	1260100000	656770000	603290000	135040000	74998000	60037000	269160000	145870000	123290000	547930000	275900000	272030000	307930000	160000000	147940000	10213	2824	9674	63237;63238;63239;63240;63241;63242;63243;63244;63245;63246;63247;63248;63249;63250;63251;63252;63253	85222;85223;85224;85225;85226;85227;85228;85229;85230;85231;85232;85233;85234;85235;85236;85237;85238;85239;85240;85241;85242;85243;85244;85245;85246;85247;85248;85249;85250;85251;85252;85253;85254;85255;85256;85257;85258;85259;85260;85261;85262	85261			41	
EAESLIAK	1	Unmodified	859.4651	0.46509784	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	26.882	21.751	2	0.00030289	13318	160513_QHF_FH_JSI11Kac_3	129.68	41.04			0.51889	0.5218	92.244	7	6	Median	3.9828	3.1944	NaN	1	1	Median	0.43816	0.5218	NaN	1	1	Median	3.6723	3.5298	115.38	3	3	Plateau	0.63901	0.69342	64.39	2	1	Median	4177300000	1570500000	2606800000	1260500000	328560000	931980000	17414000	9827500	7586100	1196900000	322920000	874000000	1702500000	909180000	793280000	10214	2090	9675	63254;63255;63256;63257;63258;63259;63260;63261	85263;85264;85265;85266;85267;85268;85269;85270	85265			8	
EAESLIAKK	2	Acetyl (K)	1029.5706	0.57062555	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		41.837	32.673	2	0.055343	18583	160513_QHF_FH_JSI11Kac_3	53.775	12.345			0.064391	0.063049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.064391	0.063049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3946300	3843200	103040	0	0	0	0	0	0	3946300	3843200	103040	0	0	0	10215	2090	9676	63262	85271	85271			1	
EAESSPFVER	0	Unmodified	1149.5302	0.5302173	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.98	4	4			1	4	2	1		4	5	3	4	28.842	23.479	2	8.7029E-44	21754	160511_QHF_FH_JSI9i_1	214.93	190.01			1.035	1.0228	9.9241	16	0	Median	1.1761	0.98168	6.7908	4	0	Median	0.80375	0.98321	7.2685	5	0	Median	1.0724	1.0479	10.4	3	0	Median	1.1127	1.1344	2.8224	4	0	Linear	10837000000	5836300000	5001100000	3170000000	1564900000	1605100000	2431300000	1429700000	1001600000	2178500000	1208000000	970470000	3057600000	1633800000	1423800000	10216	1057	9677	63263;63264;63265;63266;63267;63268;63269;63270;63271;63272;63273;63274;63275;63276;63277;63278	85272;85273;85274;85275;85276;85277;85278;85279;85280;85281;85282;85283;85284;85285;85286;85287;85288;85289;85290;85291;85292;85293;85294;85295;85296;85297;85298	85287			27	
EAETGAENASSK	1	Unmodified	1192.5208	0.52077482	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	5.4795	5.0049	2	0.027652	3142	160511_QHF_FH_JSI12i_1	40.589	34.139			1.187	1.0969	12.353	2	0	Median	1.4542	1.1971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96894	1.0052	NaN	1	0	Median	132820000	62097000	70719000	58185000	28226000	29959000	0	0	0	0	0	0	74631000	33871000	40760000	10217	229	9678	63279;63280	85299	85299			1	
EAETPQAK	1	Unmodified	872.42396	0.42396131	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	2	3	3	6.0033	1.8446	2	0.00033075	3291	160511_QHF_FH_JSI11i_1	111.82	67.369			0.94245	0.91611	10.224	9	1	Median	1.076	0.87535	NaN	1	0	Median	0.74177	0.88627	13.594	2	1	Median	0.94705	0.91611	10.308	3	0	Plateau	0.8628	0.91386	8.4341	3	0	Median	2839500000	1491300000	1348200000	657560000	313980000	343580000	735760000	433370000	302390000	667610000	327560000	340050000	778540000	416350000	362190000	10218	2586	9679	63281;63282;63283;63284;63285;63286;63287;63288;63289	85300;85301;85302;85303;85304;85305;85306;85307;85308;85309;85310	85301			11	
EAEVQAK	1	Unmodified	773.39193	0.3919329	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.3571	5.0667	2	0.014679	3034	160511_QHF_FH_JSI12i_1	65.803	7.9919			0.72895	0.8152	4.8297	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71105	0.84352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74729	0.78783	NaN	1	1	Median	853420000	546850000	306580000	0	0	0	411980000	249440000	162540000	0	0	0	441440000	297410000	144030000	10219	511	9680	63290;63291	85311;85312	85311			2	
EAFAIVSVPLSEVR	0	Unmodified	1515.8297	0.82969378	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	88.704	87.95	2	0.0002528	74292	160511_QHF_FH_JSI12i_2	100.72	1.1997			1.0056	1.0467	9.0863	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1401	1.1161	NaN	1	1	Median	0.88699	0.98152	NaN	1	0	Median	13344000	5954800	7388700	0	0	0	0	0	0	4697500	1384200	3313300	8646100	4570700	4075400	10220	2546	9681	63292;63293	85313;85314	85313			2	
EAFAIVSVPVSEIR	0	Unmodified	1515.8297	0.82969378	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	88.147	87.337	2	0.00061732	74246	160511_QHF_FH_JSI12i_2	69.979	0			0.88699	0.98152	40.92	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88864	0.865	NaN	1	1	Median	1.2604	1.3497	45.047	2	1	Median	22844000	10809000	12035000	0	0	0	0	0	0	8408400	4259800	4148700	14435000	6548900	7886400	10221	2547	9682	63294;63295;63296	85315;85316;85317	85315			3	
EAFATAFSK	1	Unmodified	970.476	0.47599688	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.71	41.334	2	0.0025078	35344	160511_QHF_FH_JSI11i_2	64.654	50.496			1.1907	1.3022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1907	1.3022	NaN	1	1	Median	61856000	23070000	38786000	0	0	0	0	0	0	0	0	0	61856000	23070000	38786000	10222	752	9683	63297;63298	85318;85319	85319			2	
EAFCQLLQLMK	1	Unmodified	1379.6941	0.69412828	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	99.439	99.197	2	0.01606	85256	160511_QHF_FH_JSI12i_2	44.719	37.319			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10223	280	9684	63299	85320	85320			1	
EAFDEVDMAHR	0	Unmodified	1318.5612	0.56119985	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	35.327	34.447	2	0.0017201	29374	160511_QHF_FH_JSI11i_2	66.19	48.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10224	5091	9685	63300;63301	85321;85322	85322			2	
EAFEAYTDHATYK	1	Unmodified	1544.6783	0.6783381	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	37.831	36.895	2;3	7.4992E-07	32430	160511_QHF_FH_JSI10i_2	90.653	74.4			1.0152	1.0387	14.425	6	0	Median	1.0443	0.8776	NaN	1	0	Median	0.80123	0.99094	NaN	1	0	Median	1.0807	1.0801	17.145	2	0	Median	1.0698	1.1765	10.956	2	0	Median	344070000	173570000	170500000	61685000	32193000	29492000	70212000	38539000	31672000	113700000	55973000	57730000	98472000	46866000	51606000	10225	236	9686	63302;63303;63304;63305;63306;63307;63308;63309	85323;85324;85325;85326;85327;85328;85329	85328			4	
EAFEETHLTSLDPVK	1	Unmodified	1714.8414	0.84138068	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	61.355	60.444	2;3	7.8335E-28	53144	160511_QHF_FH_JSI9i_2	156.71	134.66			1.1058	1.09	18.514	5	1	Median	1.3011	1.09	NaN	1	1	Median	1.1058	1.369	NaN	1	0	Median	0.9116	0.92156	2.0285	2	0	Median	1.154	1.2931	NaN	1	0	Median	425350000	209470000	215880000	74217000	32310000	41907000	101680000	54926000	46752000	141090000	64154000	76935000	108370000	58079000	50290000	10226	5048	9687	63310;63311;63312;63313;63314;63315;63316	85330;85331;85332;85333;85334;85335;85336;85337	85333			8	
EAFEISK	1	Unmodified	822.41233	0.41233399	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	29.286	28.691	2	0.0091879	25796	160511_QHF_FH_JSI12i_1	80.229	22.062			1.089	0.98846	18.357	4	0	Median	1.0963	0.91733	NaN	1	0	Median	1.0823	1.2846	NaN	1	0	Median	1.0958	1.0651	NaN	1	0	Median	0.79751	0.84631	NaN	1	0	Median	1715400000	834410000	881030000	343040000	155160000	187880000	468940000	260470000	208470000	475320000	216740000	258580000	428130000	202030000	226100000	10227	2224	9688	63317;63318;63319;63320;63321	85338;85339;85340;85341;85342;85343;85344;85345;85346	85341			9	
EAFEPMYIYISHPKPEGLAAAK	2	Unmodified	2461.2352	0.23516825	3294	Q7Z7F0	KIAA0907	UPF0469 protein KIAA0907	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.97	75.693	3	0.00014862	65651	160511_QHF_FH_JSI12i_3	53.553	40.098			0.89661	0.95303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89661	0.95303	NaN	1	1	Median	20877000	15463000	5413700	0	0	0	0	0	0	0	0	0	20877000	15463000	5413700	10228	3294	9689	63322	85347	85347			1	
EAFEQPQTSSTPPR	0	Unmodified	1573.7372	0.73724996	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	3	1	28.235	27.932	2	3.1642E-07	24624	160511_QHF_FH_JSI11i_1	90.653	67.417			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10229	1772	9690	63323;63324;63325;63326;63327;63328	85348;85349;85350;85351;85352;85353	85348			6	
EAFEQPQTSSTPPRDLDSK	1	Unmodified	2132.0022	0.0021914296	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.025	36.616	3	3.5693E-06	32749	160511_QHF_FH_JSI10i_1	92.993	78.52			0.89054	1.055	17.834	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89054	1.055	NaN	1	0	Median	1.3549	1.315	NaN	1	0	Median	0.88057	0.92383	NaN	1	0	Median	219040000	108140000	110900000	0	0	0	58906000	29493000	29413000	81584000	35710000	45874000	78547000	42935000	35612000	10230	1772	9691	63329;63330;63331;63332	85354;85355;85356;85357;85358;85359;85360;85361;85362;85363	85362			10	
EAFETFINK	1	Unmodified	1097.5393	0.53932542	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.13	54.965	2	0.023767	48972	160511_QHF_FH_JSI9i_1	49.444	29.447			0.94028	0.79751	NaN	1	1	Median	0.94028	0.79751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65943000	51753000	14189000	65943000	51753000	14189000	0	0	0	0	0	0	0	0	0	10231	2457	9692	63333	85364	85364			1	
EAFGFIER	0	Unmodified	967.47633	0.47633123	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		1	2	2	2	58.412	53.243	2	2.8488E-06	46153	160511_QHF_FH_JSI11i_2	141.52	98.604			0.92204	0.95395	9.2281	7	0	Median	1.1796	1.0052	NaN	1	0	Median	0.72421	0.86943	13.12	2	0	Median	0.94786	0.94721	6.2797	2	0	Median	0.90778	1.0024	7.2873	2	0	Median	842150000	450510000	391640000	147560000	70234000	77323000	220120000	127700000	92416000	320820000	163890000	156930000	153660000	88687000	64972000	10232	543	9693	63334;63335;63336;63337;63338;63339;63340	85365;85366;85367;85368;85369;85370;85371;85372;85373;85374;85375	85370			11	
EAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTR	0	Unmodified	3845.9992	0.99922531	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.83	98.105	4	9.3125E-26	58086	160513_QHF_FH_JSI10Kac_6	145.86	137.17			0.82744	0.98882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82744	0.98882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39196000	28232000	10964000	0	0	0	39196000	28232000	10964000	0	0	0	0	0	0	10233	3862	9694	63341	85376	85376			1	
EAFISEEEIAK	1	Unmodified	1264.6187	0.61869795	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	51.621	51.082	2	9.4665E-06	46080	160511_QHF_FH_JSI11i_1	111.06	92.745			0.88214	0.88171	32.678	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1359	1.1109	NaN	1	1	Median	0.68508	0.6998	NaN	1	1	Median	185850000	99289000	86559000	0	0	0	0	0	0	100120000	52515000	47602000	85731000	46774000	38957000	10234	4143	9695	63342;63343	85377;85378	85377			2	
EAFLEQFRK	1	Unmodified	1166.6084	0.60840804	1223	P23258	TUBG1	Tubulin gamma-1 chain	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		47.983	46.938	2;3	0.00049299	39236	160511_QHF_FH_JSI10i_3	53.317	41.154			0.99902	1.1563	38.389	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.69134	0.78767	54.291	2	1	Median	0.84775	0.78636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	321990000	200210000	121780000	0	0	0	222180000	149940000	72243000	99802000	50267000	49534000	0	0	0	10235	1223	9696	63344;63345;63346	85379;85380;85381	85380			3	
EAFLNTEDKGDSLDSVEALIK	2	Unmodified	2293.1325	0.1325369	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	90.169	89.694	3	2.6516E-05	77433	160511_QHF_FH_JSI12i_2	57.989	44.815			0.90544	0.91669	21.212	5	1	Median	0.86439	0.73991	NaN	1	1	Median	0.92777	1.0873	28.23	2	0	Median	0.90978	0.91669	NaN	1	0	Median	0.90544	0.96099	NaN	1	0	Median	107510000	55149000	52365000	20465000	11765000	8700300	36450000	17002000	19448000	24118000	13138000	10980000	26481000	13244000	13236000	10236	2470	9697	63347;63348;63349;63350;63351	85382;85383;85384;85385;85386	85382			5	
EAFLQEVWK	1	Unmodified	1148.5866	0.58660996	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.47	3	4						4		1	3	3	4	76.451	72.86	2	7.0795E-07	64956	160511_QHF_FH_JSI11i_2	137.14	127.72			0.94396	0.9558	30.18	10	2	Median	0.99932	0.8512	NaN	1	0	Median	1.1314	1.3415	32.124	3	1	Median	1.0092	0.99818	28.031	3	1	Median	0.78348	0.86802	17.616	3	0	Median	1327800000	739300000	588470000	204300000	112340000	91956000	380630000	234900000	145730000	464510000	240180000	224330000	278330000	151870000	126460000	10237	1283	9698	63352;63353;63354;63355;63356;63357;63358;63359;63360;63361;63362	85387;85388;85389;85390;85391;85392;85393;85394;85395;85396;85397;85398;85399;85400;85401;85402	85398			16	
EAFNIIGR	0	Unmodified	918.49232	0.49231565	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		48.644	47.799	2	0.0030715	41138	160511_QHF_FH_JSI11i_2	81.89	59.366			0.84386	0.88865	3.8372	3	3	Median	1.0841	0.91974	NaN	1	1	Median	0.74028	0.88865	NaN	1	1	Median	0.84386	0.85191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	174130000	90527000	83605000	51350000	24040000	27310000	52955000	30527000	22428000	69826000	35960000	33867000	0	0	0	10238	4234	9699	63363;63364;63365	85403;85404;85405	85404			3	
EAFNMIDQNR	0	Unmodified	1236.5557	0.55572054	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	3	2	44.259	39.967	2	9.9074E-19	34491	160511_QHF_FH_JSI11i_2	169.65	156.61			0.86432	0.8921	9.7349	8	1	Median	0.92779	0.76594	NaN	1	0	Median	0.74911	0.87793	2.8175	2	0	Median	0.88463	0.90107	11.412	3	1	Median	0.88337	0.94441	8.6114	2	0	Median	1310300000	706100000	604150000	189320000	95325000	93993000	384120000	210600000	173510000	504020000	279300000	224720000	232800000	120880000	111920000	10239	223;1151	9700	63366;63367;63368;63369;63370;63371;63372;63373	85406;85407;85408;85409;85410;85411;85412;85413;85414	85413			9	
EAFNMIDQNRDGFIDK	1	Unmodified	1911.8785	0.87851124	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	1	3	3	62.264	61.521	2;3	4.6595E-21	52999	160511_QHF_FH_JSI12i_3	184.21	161.97			0.90877	0.9827	11.104	9	0	Median	1.2535	1.0638	1.0495	2	0	Median	0.76721	0.92883	NaN	1	0	Median	0.95643	0.9827	15.434	3	0	Median	0.89187	0.96742	11.384	3	0	Median	1961500000	910130000	1051400000	514000000	246260000	267740000	73346000	38705000	34642000	735820000	347850000	387970000	638380000	277310000	361070000	10240	223;1151	9701	63374;63375;63376;63377;63378;63379;63380;63381;63382	85415;85416;85417;85418;85419;85420;85421;85422;85423;85424;85425;85426;85427;85428;85429;85430;85431;85432;85433;85434;85435;85436	85434			22	
EAFQALEK	1	Unmodified	934.476	0.47599688	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	6						2			1	2	2	3	35.132	31.859	2	0.00083171	28543	160511_QHF_FH_JSI11i_1	97.635	69.417			1.1072	1.1807	66.296	7	4	Median	2.4121	2.0173	NaN	1	1	Median	0.4445	0.51398	NaN	1	1	Median	1.1408	1.1393	31.09	2	0	Median	1.1072	1.1807	77.13	3	2	Median	1027600000	414970000	612630000	145870000	52049000	93823000	201910000	119410000	82500000	237490000	87630000	149860000	442330000	155880000	286440000	10241	2306	9702	63383;63384;63385;63386;63387;63388;63389;63390	85437;85438;85439;85440;85441;85442;85443;85444	85437			8	
EAFQALEKLNNR	1	Acetyl (K)	1473.7576	0.75759147	2306	Q12792	TWF1	Twinfilin-1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.962	64.266	2	4.368E-07	34296	160513_QHF_FH_JSI11Kac_5	133.07	93.068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2628100	2628100	0	0	0	0	0	0	0	2628100	2628100	0	0	0	0	10242	2306	9703	63391	85445	85445	2410		1	
EAFQLFDR	0	Unmodified	1024.4978	0.49779495	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.93	3	4	4				1	4		3	4	4	5	63.672	59.807	2	7.8014E-16	53092	160511_QHF_FH_JSI10i_2	182.53	136.16			0.96493	0.97072	19.356	16	1	Median	1.1769	0.96793	2.0187	3	0	Plateau	0.75808	0.88567	4.4191	4	0	Median	0.96493	0.9624	5.7775	4	0	Median	1.0188	1.0295	31.21	5	1	Median	7530700000	3809100000	3721600000	1369300000	593540000	775710000	1543800000	860590000	683250000	2643000000	1308700000	1334300000	1974600000	1046200000	928390000	10243	1915	9704	63392;63393;63394;63395;63396;63397;63398;63399;63400;63401;63402;63403;63404;63405;63406;63407	85446;85447;85448;85449;85450;85451;85452;85453;85454;85455;85456;85457;85458;85459;85460;85461;85462;85463;85464;85465;85466;85467;85468;85469;85470;85471;85472;85473;85474;85475	85471			30	
EAFQLFDRTGDGK	1	Unmodified	1482.7103	0.71030693	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			52.889	51.327	3	0.018607	42912	160511_QHF_FH_JSI10i_3	43.316	31.048			0.96348	1.141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96348	1.141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95224000	46646000	48578000	0	0	0	95224000	46646000	48578000	0	0	0	0	0	0	10244	1915	9705	63408	85476	85476			1	
EAFQPQEPDFPPPPPDLEQLR	0	Unmodified	2446.1805	0.18049015	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				91.143	90.343	3	0.0038813	80352	160511_QHF_FH_JSI9i_1	41.912	37.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10245	1139	9706	63409	85477	85477			1	
EAFQSVVLPAFEK	1	Unmodified	1463.766	0.76603089	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	82.76	82.157	2	6.7091E-05	72190	160511_QHF_FH_JSI11i_2	114.82	90.025			0.54811	0.53986	22.016	7	3	Median	0.5721	0.48583	14.914	2	1	Median	0.48257	0.56272	NaN	1	0	Median	0.58048	0.56614	26.459	2	1	Median	0.57103	0.61821	37.266	2	1	Median	362150000	239790000	122360000	72726000	45561000	27165000	51496000	30384000	21113000	138750000	96589000	42157000	99186000	67257000	31929000	10246	3100	9707	63410;63411;63412;63413;63414;63415;63416	85478;85479;85480;85481;85482;85483;85484	85484			6	
EAFSDGITSVK	1	Unmodified	1152.5663	0.56626845	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	42.415	41.762	2	3.8921E-07	38002	160511_QHF_FH_JSI12i_1	118.04	95.3			1.5056	1.5231	15.097	4	2	Median	1.8674	1.5062	NaN	1	1	Median	1.294	1.5402	NaN	1	1	Median	1.7518	1.7037	NaN	1	0	Median	1.1118	1.1923	NaN	1	0	Median	1009800000	461970000	547820000	235980000	107140000	128850000	227030000	111760000	115270000	266630000	105420000	161220000	280140000	137650000	142490000	10247	900	9708	63417;63418;63419;63420;63421	85485;85486;85487;85488;85489	85486			5	
EAFSLFDK	1	Unmodified	955.4651	0.46509784	958	P0DP25;P0DP24;P0DP23;P27482	CALML3	Calmodulin-like protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.69	7	8	4				3	4		5	7	7	7	65.492	62.063	1;2	7.9729E-09	54930	160511_QHF_FH_JSI10i_2	163.99	65.686			0.95894	0.99979	12.25	26	0	Median	1.2528	1.0269	5.1844	5	0	Median	0.89088	1.0018	10.822	7	0	Median	0.91403	0.93171	10.004	7	0	Median	0.97565	1.0096	18.473	7	0	Median	25086000000	11342000000	13744000000	4349200000	1799400000	2549800000	6334400000	2834700000	3499700000	8476200000	3802200000	4674000000	5926100000	2905700000	3020400000	10248	958	9709	63422;63423;63424;63425;63426;63427;63428;63429;63430;63431;63432;63433;63434;63435;63436;63437;63438;63439;63440;63441;63442;63443;63444;63445;63446;63447	85490;85491;85492;85493;85494;85495;85496;85497;85498;85499;85500;85501;85502;85503;85504;85505;85506;85507;85508;85509;85510;85511;85512;85513;85514;85515;85516;85517;85518;85519;85520;85521;85522;85523;85524;85525;85526;85527;85528;85529;85530;85531;85532;85533;85534;85535;85536;85537;85538;85539;85540;85541	85537			51	
EAFSLFDKDGDGTITTK	2	Acetyl (K)	1885.8945	0.89453846	958	P0DP25;P0DP24;P0DP23			yes	no	1	0	0	1			By MS/MS		15	0								1				1		82.668	72.131	2	0.0025033	38156	160513_QHF_FH_JSI11Kac_5	76.522	63.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1017300	1017300	0	0	0	0	0	0	0	1017300	1017300	0	0	0	0	10249	958	9710	63448	85542	85542	726		1	
EAFSLFDKDGDGTITTK	2	Unmodified	1843.884	0.88397377	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	1				By MS/MS	3	0			1										1	65.007	64.717	3	0.0014322	55846	160511_QHF_FH_JSI12i_3	52.045	40.783			1.7162	1.7242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7162	1.7242	NaN	1	0	Median	42030000	15447000	26583000	0	0	0	0	0	0	0	0	0	42030000	15447000	26583000	10250	958	9710	63449	85543	85543			1	
EAFTNKPNVFTVVTR	1	Unmodified	1721.9101	0.91006937	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		60.673	59.53	3	0.00011293	48876	160511_QHF_FH_JSI9i_3	96.78	86.98			0.94627	0.94068	20.585	4	3	Median	1.335	1.0674	NaN	1	1	Median	0.88055	1.0036	27.023	2	2	Median	0.85149	0.78814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	458330000	234820000	223520000	149950000	61010000	88943000	221980000	125860000	96125000	86397000	47948000	38449000	0	0	0	10251	512	9711	63450;63451;63452;63453	85544;85545;85546;85547	85547			4	
EAFVHVVTLEDMREIEK	1	Unmodified	2044.0299	0.029926505	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	74.21	74.065	4	0.012028	66139	160511_QHF_FH_JSI11i_3	41.871	31.236			1.7934	1.7364	6.1518	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9086	1.8136	NaN	1	1	Median	1.6852	1.6625	NaN	1	1	Median	61036000	22601000	38435000	0	0	0	0	0	0	17727000	7870600	9856900	43309000	14730000	28579000	10252	4996	9712	63454;63455	85548;85549	85548			2	
EAFVTSAYKK	2	Unmodified	1142.5972	0.59717465	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.403	24.378	2	0.0069427	20203	160511_QHF_FH_JSI12i_3	58.433	32.328			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10253	4632	9713	63456	85550	85550			1	
EAFVVEEWVK	1	Unmodified	1234.6234	0.6233894	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0				By MS/MS	15	0								1					1	81.459	71.035	2	0.0029466	34768	160513_QHF_FH_JSI12Kac_5	68.735	49.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10254	1438	9714	63457	85551	85551			1	
EAGADDILDISK	1	Unmodified	1245.6089	0.60886155	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		58.089	57.667	2	0.00092442	52226	160511_QHF_FH_JSI11i_1	77.541	59.676			0.64841	0.6424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64841	0.6424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26680000	16815000	9865200	0	0	0	0	0	0	26680000	16815000	9865200	0	0	0	10255	3150	9715	63458;63459	85552;85553	85552			2	
EAGAGGLAIAVEGPSK	1	Unmodified	1425.7464	0.74635808	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.8	9	3	4			1	1			4	6	3	5	54.082	52.082	2;3	9.8366E-41	46934	160511_QHF_FH_JSI10i_1	255.54	238.21			0.9039	0.93482	8.7488	16	2	Median	1.2	0.97303	5.1863	4	0	Median	0.78351	0.92582	8.7499	6	0	Median	0.88185	0.86793	7.784	3	1	Median	0.92416	1.0134	4.8157	3	1	Median	2405600000	1417200000	988440000	550020000	283440000	266580000	677520000	455480000	222040000	573380000	328910000	244470000	604690000	349340000	255340000	10256	1192	9716	63460;63461;63462;63463;63464;63465;63466;63467;63468;63469;63470;63471;63472;63473;63474;63475;63476;63477	85554;85555;85556;85557;85558;85559;85560;85561;85562;85563;85564;85565;85566;85567;85568;85569;85570;85571;85572;85573;85574;85575;85576;85577;85578;85579;85580;85581;85582;85583;85584;85585;85586	85572			32	
EAGAGGLSIAVEGPSK	1	Unmodified	1441.7413	0.7412727	512;2527	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	50.809	50.133	2	0.001404	44722	160511_QHF_FH_JSI9i_1	102.9	93.248			0.61099	0.75242	6.6413	4	0	Linear	0.99245	0.82972	NaN	1	0	Median	0.64414	0.76528	NaN	1	0	Median	0.77247	0.73978	NaN	1	0	Median	0.68024	0.70936	NaN	1	0	Median	644070000	378100000	265970000	145630000	77870000	67763000	176420000	116170000	60258000	156080000	82522000	73562000	165930000	101550000	64385000	10257	512;2527	9717	63478;63479;63480;63481	85587;85588;85589	85589			0	
EAGDVCYADVQK	1	Unmodified	1353.5871	0.58708025	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	27.955	27.574	2	0.00010749	24369	160511_QHF_FH_JSI11i_1	84.198	66.762			0.90729	0.88042	56	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63245	0.59254	NaN	1	1	Median	1.3016	1.3082	NaN	1	1	Median	41652000	23918000	17734000	0	0	0	0	0	0	24272000	17760000	6512800	17379000	6158000	11221000	10258	2376	9718	63482;63483;63484	85590;85591;85592	85591			3	
EAGDVCYADVYR	0	Unmodified	1416.598	0.59797928	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	41.617	40.891	2	3.7547E-16	36930	160511_QHF_FH_JSI11i_1	164.43	161.17			1.1727	1.1697	12.626	3	0	Median	1.4324	1.1697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9762	0.94655	NaN	1	0	Median	1.1727	1.1855	NaN	1	0	Median	418100000	192180000	225920000	73657000	31419000	42239000	0	0	0	165030000	79514000	85515000	179420000	81248000	98168000	10259	2260	9719	63485;63486;63487	85593;85594;85595;85596;85597;85598	85594			6	
EAGEDEEGFLSK	1	Unmodified	1309.5674	0.56739066	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.397	36.964	2	0.00033631	33245	160511_QHF_FH_JSI11i_1	71.896	60.26			2.0042	2.0203	42.454	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.543	1.4964	NaN	1	0	Median	2.6033	2.7277	NaN	1	1	Median	242560000	77903000	164660000	0	0	0	0	0	0	80844000	31829000	49015000	161720000	46074000	115640000	10260	4062	9720	63488;63489	85599;85600	85599			2	
EAGEGGEAEAPAAEGGK	1	Unmodified	1528.6641	0.66414459	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.29	8	1		3	6					2	5	6	5	15.588	11.568	2;3	1.1746E-81	10043	160511_QHF_FH_JSI11i_1	252.42	239.85			1.0822	1.0876	27.776	17	3	Median	1.0221	0.83801	12.722	2	0	Median	0.91851	1.1017	32.946	5	1	Median	1.1365	1.0876	32.752	5	1	Median	0.9842	1.0411	16.622	5	1	Plateau	3741700000	1793100000	1948700000	927570000	486470000	441100000	948860000	462610000	486260000	980760000	407850000	572910000	884560000	436130000	448430000	10261	1329	9721	63490;63491;63492;63493;63494;63495;63496;63497;63498;63499;63500;63501;63502;63503;63504;63505;63506;63507	85601;85602;85603;85604;85605;85606;85607;85608;85609;85610;85611;85612;85613;85614;85615;85616;85617;85618;85619;85620;85621;85622;85623;85624;85625	85602			24	
EAGELKPEEEITVGPVQK	2	Unmodified	1952.0102	0.01023692	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	52.473	51.702	2;3	9.9449E-12	46488	160511_QHF_FH_JSI10i_1	145.48	135.2			0.91776	0.91735	20.442	12	0	Median	1.0844	0.8886	12.778	3	0	Median	0.94942	1.136	21.38	3	0	Median	1.0239	0.98765	30.172	3	0	Median	0.76375	0.80545	9.7026	3	0	Median	2546100000	1257600000	1288500000	554480000	266610000	287880000	721600000	349030000	372570000	692430000	346610000	345820000	577580000	295390000	282190000	10262	1804	9722	63508;63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519	85626;85627;85628;85629;85630;85631;85632;85633;85634;85635;85636;85637;85638;85639;85640;85641;85642;85643;85644;85645;85646;85647	85637			21	
EAGEQGDIEPR	0	Unmodified	1199.5418	0.54184461	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.27	5	3	2		3	3				1	6	5	4	16.025	12.889	2	6.7163E-15	8076	160513_QHF_FH_JSI12Kac_3	156.58	121.14			0.91478	0.95911	43.654	15	6	Median	1.1208	0.88681	NaN	1	1	Median	0.80183	0.95829	14.995	5	2	Median	1.0925	1.0564	15.452	5	2	Median	1.0076	1.0899	77.546	4	1	Median	5978600000	2982800000	2995800000	1023100000	453380000	569670000	2424800000	1350200000	1074500000	1247200000	579310000	667900000	1283600000	599910000	683680000	10263	2381	9723	63520;63521;63522;63523;63524;63525;63526;63527;63528;63529;63530;63531;63532;63533;63534;63535	85648;85649;85650;85651;85652;85653;85654;85655;85656;85657;85658;85659;85660;85661;85662;85663;85664;85665;85666	85661			19	
EAGGAFGK	1	Unmodified	735.35515	0.35515346	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.41	7	4	1				2			2	3	4	5	10.32	8.9523	1;2	0.011855	7384	160511_QHF_FH_JSI10i_1	89.142	66.123			1.0422	1.4277	23.148	14	1	Linear	1.3616	1.1322	16.895	2	0	Median	1.0797	1.269	34.658	3	1	Plateau	1.1517	1.1412	14.137	4	0	Median	0.8884	0.90653	23.468	5	0	Median	4400400000	2026400000	2374000000	812580000	368710000	443870000	1256800000	602640000	654200000	1124300000	457560000	666740000	1206700000	597520000	609190000	10264	5331	9724	63536;63537;63538;63539;63540;63541;63542;63543;63544;63545;63546;63547;63548;63549	85667;85668;85669;85670;85671;85672;85673;85674;85675;85676;85677;85678;85679;85680	85676			14	
EAGGAFGKR	1	Unmodified	891.45626	0.45626449	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.73	0.445		3	8							3	4	2	2	7.0247	6.725	2;3	4.0029E-05	4434	160511_QHF_FH_JSI11i_3	73.665	52.217			0.73084	0.71316	28.637	11	2	Median	1.4411	1.1425	20.59	3	1	Plateau	0.44744	0.52566	13.876	4	1	Median	0.84325	0.80157	17.404	2	0	Median	0.72381	0.73424	4.1209	2	0	Median	5159000000	2443800000	2715200000	2016300000	739950000	1276300000	1564600000	917540000	647080000	1313300000	638300000	674990000	264790000	147970000	116820000	10265	5331	9725	63550;63551;63552;63553;63554;63555;63556;63557;63558;63559;63560	85681;85682;85683;85684;85685;85686;85687;85688;85689;85690;85691;85692;85693;85694	85682			14	
EAGGAFGKR	1	Acetyl (K)	933.46683	0.46682918	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	1	2	23.298	14.765	2	0.00055902	10351	160513_QHF_FH_JSI11Kac_4	118.32	62.203			0.67045	0.75625	19.586	4	0	Median	NaN	NaN	NaN	0	0	Median	0.72053	0.8587	NaN	1	0	Median	0.61885	0.61372	NaN	1	0	Median	0.72065	0.78358	22.988	2	0	Median	76992000	47843000	29148000	0	0	0	22364000	13452000	8912400	22912000	14914000	7997700	31716000	19477000	12238000	10266	5331	9725	63561;63562;63563;63564	85695;85696;85697	85696	3368		3	
EAGGGGVGGPGAK	1	Unmodified	1012.4938	0.49377221	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.29	4	4	4		2	4	1			3	6	5	5	7.8357	4.9293	2	1.5257E-16	3402	160513_QHF_FH_JSI11Kac_3	140.45	97.2			0.93321	0.95668	15.136	19	5	Median	1.3128	1.1318	12.671	3	1	Plateau	0.86408	1.0194	17.153	6	1	Median	0.98816	0.97418	9.3667	5	2	Median	0.76335	0.79891	16.226	5	1	Median	21974000000	10824000000	11150000000	6085900000	2594800000	3491200000	5369500000	2848300000	2521200000	5231700000	2592500000	2639200000	5286800000	2788500000	2498300000	10267	3609	9726	63565;63566;63567;63568;63569;63570;63571;63572;63573;63574;63575;63576;63577;63578;63579;63580;63581;63582;63583	85698;85699;85700;85701;85702;85703;85704;85705;85706;85707;85708;85709;85710;85711;85712;85713;85714;85715;85716;85717;85718;85719;85720;85721;85722	85707			25	
EAGISKDR	1	Acetyl (K)	916.46141	0.46140945	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	1	2	16.728	8.8681	2	0.0018027	6795	160513_QHF_FH_JSI10Kac_3	101.43	44.71			0.7931	0.84864	29.051	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89731	1.0804	1.2656	2	0	Median	0.53582	0.53083	NaN	1	0	Median	0.77062	0.83701	1.952	2	0	Median	104220000	58792000	45428000	0	0	0	36793000	20164000	16629000	36961000	22239000	14722000	30467000	16389000	14078000	10268	1471	9727	63584;63585;63586;63587;63588	85723;85724;85725;85726;85727;85728;85729	85729	1456		7	
EAGITEK	1	Unmodified	746.38103	0.38103386	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.11	4	2				1				2	2	1	2	7.8135	6.472	2	0.0074664	5258	160511_QHF_FH_JSI12i_1	87.323	51.137			0.68219	0.70468	14.357	7	0	Median	0.97165	0.85715	15.706	2	0	Median	0.57726	0.66523	2.0481	2	0	Median	0.65945	0.65314	NaN	1	0	Median	0.73053	0.76748	12.073	2	0	Median	34390000000	18086000000	16304000000	8362300000	4119700000	4242600000	9046000000	5190800000	3855200000	9358300000	4808700000	4549600000	7623600000	3966900000	3656600000	10269	1908	9728	63589;63590;63591;63592;63593;63594;63595	85730;85731;85732;85733;85734;85735	85732			6	
EAGLAPVPMIIFAK	1	Unmodified	1455.816	0.81595797	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	3	1	101.23	101.14	2	5.9748E-30	88816	160511_QHF_FH_JSI11i_2	190.96	165.75			0.91795	0.9278	13.148	8	2	Median	1.1726	0.96221	12.886	2	1	Median	0.8635	1.0415	0.6579	2	0	Median	0.93434	0.91672	14.607	3	1	Median	0.75936	0.83338	NaN	1	0	Median	1420900000	757860000	663050000	278750000	141080000	137670000	384600000	207010000	177590000	534310000	279520000	254790000	223250000	130250000	93000000	10270	843	9729	63596;63597;63598;63599;63600;63601;63602;63603	85736;85737;85738;85739;85740;85741;85742;85743;85744;85745;85746;85747;85748	85746			13	
EAGLAPVPMIIFAK	1	Oxidation (M)	1471.8109	0.81087259	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	1	0		By MS/MS	By MS/MS		15	0								2			1	1		86.561	76.098	2	0.0018751	37538	160513_QHF_FH_JSI10Kac_5	65.347	41.496			0.91993	0.98988	6.2007	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81062	0.94741	NaN	1	0	Median	1.044	1.0342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6703600	3438000	3265500	0	0	0	2280700	1330800	949910	4422900	2107200	2315600	0	0	0	10271	843	9729	63604;63605	85749;85750;85751;85752	85752		365	4	
EAGLSWK	1	Unmodified	789.4021	0.40210366	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	31.461	30.282	2	0.035447	25616	160511_QHF_FH_JSI12i_2	50.703	37.496			0.6535	0.62851	25.672	2	2	Median	0.61667	0.52418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69253	0.75362	NaN	1	1	Median	426540000	248640000	177900000	198470000	123580000	74892000	0	0	0	0	0	0	228060000	125050000	103010000	10272	2217	9730	63606;63607	85753;85754	85753			2	
EAGMFAPTQR	0	Unmodified	1106.5179	0.51787847	1663	P49585	PCYT1A	Choline-phosphate cytidylyltransferase A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	29.232	28.858	2	0.0018987	24382	160511_QHF_FH_JSI11i_2	66.962	49.053			1.275	1.2825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.275	1.2825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27150000	11489000	15662000	0	0	0	0	0	0	27150000	11489000	15662000	0	0	0	10273	1663	9731	63608;63609;63610	85755;85756;85757	85757			3	
EAGMQPQLQIR	0	Unmodified	1269.65	0.64995528	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.64	5	3					3			3	3	3	2	44.372	42.383	2	3.4091E-23	37642	160511_QHF_FH_JSI9i_1	175.51	135.51			1.0346	1.0157	6.5302	8	0	Median	1.3603	1.1206	4.8769	2	0	Median	0.84118	1.0089	0.65575	2	0	Median	1.0423	1.0188	0.33518	3	0	Plateau	0.87504	0.92335	NaN	1	0	Median	1280500000	664340000	616110000	247820000	119190000	128630000	402440000	220900000	181540000	412900000	207620000	205290000	217290000	116630000	100650000	10274	5633	9732	63611;63612;63613;63614;63615;63616;63617;63618;63619;63620;63621	85758;85759;85760;85761;85762;85763;85764;85765;85766;85767;85768;85769;85770;85771;85772;85773	85767			16	
EAGNINQSLLTLGR	0	Unmodified	1484.7947	0.79470526	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	1	2	65.33	64.506	2	0.00015163	56695	160511_QHF_FH_JSI9i_2	96.745	74.752			1.1216	1.0608	18.91	4	2	Median	1.1418	0.97265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1978	1.157	NaN	1	1	Median	0.90293	0.96037	28.692	2	1	Median	88613000	41473000	47140000	21553000	8399000	13154000	0	0	0	19282000	8062700	11219000	47778000	25011000	22768000	10275	1779	9733	63622;63623;63624;63625;63626	85774;85775;85776;85777;85778;85779	85778			6	
EAGNINTSLHTLGR	0	Unmodified	1481.7587	0.7586541	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	35.433	35.37	3	7.4355E-05	30866	160511_QHF_FH_JSI11i_3	64.52	50.931			0.97851	0.95425	8.9872	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95398	0.89549	NaN	1	0	Median	1.0037	1.0169	NaN	1	0	Median	116800000	53317000	63478000	0	0	0	0	0	0	53871000	21614000	32256000	62925000	31703000	31222000	10276	661	9734	63627;63628	85780	85780			1	
EAGNPGSLFGYSVALHR	0	Unmodified	1773.8798	0.87983187	1269	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				70.544	69.058	3	1.3486E-06	56690	160511_QHF_FH_JSI9i_3	100.77	89.002			1.3559	1.1175	10.122	2	2	Median	1.3559	1.1175	10.122	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64142000	27753000	36388000	64142000	27753000	36388000	0	0	0	0	0	0	0	0	0	10277	1269	9735	63629;63630	85781;85782;85783	85782			3	
EAGPNPSRPTSWK	1	Unmodified	1425.7001	0.70007659	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			23.987	22.699	3	0.020996	18729	160511_QHF_FH_JSI10i_3	37.013	23.296			1.0395	1.0234	14.553	2	0	Median	1.3707	1.1344	NaN	1	0	Median	0.78828	0.92336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72828000	39493000	33335000	45625000	21777000	23848000	27203000	17716000	9487000	0	0	0	0	0	0	10278	5066	9736	63631;63632	85784	85784			1	
EAGSEPAPEQESTEATPAE	0	Unmodified	1928.8123	0.81232497	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	29.922	29.235	2	5.2834E-07	26162	160511_QHF_FH_JSI11i_1	89.403	83.744			1.1218	1.1568	15.069	3	2	Median	1.1218	0.92407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2635	1.2304	NaN	1	1	Median	1.1032	1.1568	NaN	1	0	Median	44542000	18495000	26047000	9765200	4175800	5589400	0	0	0	13845000	4635700	9209400	20932000	9683600	11248000	10279	3143	9737	63633;63634;63635;63636	85785;85786;85787;85788;85789	85786			5	
EAGVEMGDEDDLSTPNEK	1	Unmodified	1934.8051	0.80513111	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										2	2	3	43.424	42.924	2;3	1.5497E-91	38879	160511_QHF_FH_JSI12i_1	301.57	269.73			0.97674	1.0241	17.358	7	2	Median	NaN	NaN	NaN	0	0	Median	0.96623	1.1258	24.458	2	0	Median	1.1808	1.1472	8.6521	2	0	Median	0.97674	1.0241	14.13	3	2	Plateau	1254500000	620940000	633520000	0	0	0	391580000	220900000	170670000	299290000	126480000	172820000	563590000	273550000	290030000	10280	1064	9738	63637;63638;63639;63640;63641;63642;63643	85790;85791;85792;85793;85794	85791			3	
EAGVEMGDEDDLSTPNEK	1	Oxidation (M)	1950.8	0.80004573	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	32.04	31.438	2	2.8069E-23	28149	160511_QHF_FH_JSI11i_1	138.87	129.98			0.94746	0.85685	21.813	4	2	Median	0.90985	0.73409	NaN	1	0	Median	0.65429	0.74108	NaN	1	1	Median	1.1726	1.1387	NaN	1	1	Median	0.98662	0.99071	NaN	1	0	Median	88902000	42161000	46742000	20399000	10108000	10291000	22779000	15042000	7736700	17968000	4709500	13259000	27756000	12302000	15455000	10281	1064	9738	63644;63645;63646;63647;63648	85795;85796;85797;85798;85799;85800;85801	85796		703	7	
EAGVFVPR	0	Unmodified	873.47085	0.47085192	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.26	4	4	2				2	4		4	5	4	3	36.477	32.164	2	0.00035431	27430	160511_QHF_FH_JSI12i_2	111.04	84.927			1.0001	1.0734	61.009	16	0	Median	1.303	1.0845	123.42	4	0	Median	0.90527	1.0739	5.5028	5	0	Median	1.0602	1.0831	20.559	4	0	Median	1.0175	1.1099	4.2891	3	0	Plateau	4412900000	2035500000	2377300000	782390000	345330000	437060000	1202100000	597070000	605070000	1519300000	645230000	874040000	909070000	447920000	461150000	10282	1798	9739	63649;63650;63651;63652;63653;63654;63655;63656;63657;63658;63659;63660;63661;63662;63663;63664	85802;85803;85804;85805;85806;85807;85808;85809;85810;85811;85812;85813;85814;85815;85816;85817;85818;85819;85820;85821	85804			20	
EAGVLMYR	0	Unmodified	937.46914	0.46913736	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	36.559	35.644	2	0.0062827	30390	160511_QHF_FH_JSI11i_2	63.054	32.336			1.0752	1.2344	6.7139	3	2	Median	NaN	NaN	NaN	0	0	Median	0.98713	1.2002	NaN	1	1	Median	1.3504	1.3638	NaN	1	0	Median	1.0752	1.2344	NaN	1	1	Median	229150000	108580000	120570000	0	0	0	65605000	33184000	32421000	109540000	47899000	61644000	54004000	27500000	26504000	10283	1020	9740	63665;63666;63667;63668	85822;85823;85824;85825	85824			4	
EAGVSDMK	1	Unmodified	835.37457	0.37456828	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	10.635	10.15	2	0.0053228	8006	160511_QHF_FH_JSI12i_1	63.565	32.276			1.1926	1.0575	72.779	4	4	Median	2.2995	1.8959	108.69	2	2	Median	0.73255	0.88077	NaN	1	1	Median	1.3312	1.2696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1770900000	630090000	1140800000	855430000	214040000	641380000	602250000	314280000	287970000	313210000	101770000	211440000	0	0	0	10284	155	9741	63669;63670;63671;63672;63673	85826;85827;85828;85829;85830	85827			5	
EAGVSDMK	1	Oxidation (M)	851.36948	0.3694829	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		5.73	-1.588	2	0.02844	1992	160513_QHF_FH_JSI11Kac_3	58.815	23.991			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10285	155	9741	63674	85831	85831			1	
EAHAQSIGMNR	0	Unmodified	1212.567	0.56695393	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.38		7	4					2	4	4	2	8	3	12.482	9.4906	2;3	6.8805E-38	8314	160511_QHF_FH_JSI11i_3	204.34	186.03			1.0735	1.0522	21.845	16	1	Median	1.4446	1.2447	16.851	4	1	Median	0.85344	1.0495	2.5419	2	0	Median	1.1263	1.0356	28.889	7	0	Median	1.0227	1.0201	2.2078	3	0	Plateau	1897700000	931870000	965810000	236200000	111450000	124750000	314590000	155910000	158680000	802710000	388060000	414640000	544180000	276440000	267740000	10286	1254	9742	63675;63676;63677;63678;63679;63680;63681;63682;63683;63684;63685;63686;63687;63688;63689;63690;63691	85832;85833;85834;85835;85836;85837;85838;85839;85840;85841;85842;85843;85844;85845;85846;85847;85848;85849;85850;85851;85852	85832			21	
EAHAQSIGMNR	0	Oxidation (M)	1228.5619	0.56186855	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5	5.02		2	2					1			2	2	1	8.7837	6.298	2	9.5096E-05	3646	160511_QHF_FH_JSI12i_3	93.325	87.977			0.82816	0.89137	15.782	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.8917	1.1066	NaN	1	0	Median	0.9655	0.89004	14.472	2	0	Median	0.80811	0.80586	NaN	1	0	Median	123440000	60913000	62528000	0	0	0	21816000	11150000	10666000	40212000	17899000	22313000	61413000	31863000	29549000	10287	1254	9742	63692;63693;63694;63695;63696	85853;85854;85855;85856;85857;85858;85859	85858		885	7	
EAHEPLAVADAK	1	Unmodified	1249.6303	0.63026569	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	23.485	22.671	2	0.00089848	18790	160511_QHF_FH_JSI11i_2	66.92	53.964			1.628	1.6228	35.994	3	2	Median	NaN	NaN	NaN	0	0	Median	0.82591	1.0245	NaN	1	1	Median	1.628	1.6228	NaN	1	0	Median	1.8851	2.0829	NaN	1	1	Median	56328000	22184000	34144000	0	0	0	10366000	4632000	5734500	31034000	12955000	18079000	14927000	4596900	10331000	10288	5544	9743	63697;63698;63699	85860;85861;85862;85863	85862			4	
EAHKPPVFIEK	2	Unmodified	1293.7081	0.70812208	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	26.136	25.689	3	0.00023866	21083	160511_QHF_FH_JSI12i_3	70.089	61.135			1.001	0.80329	21.833	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69813	0.80329	NaN	1	0	Median	0.75826	0.71974	NaN	1	0	Median	1.0439	1.0964	NaN	1	0	Median	904610000	500030000	404580000	0	0	0	113100000	67270000	45835000	251620000	133770000	117850000	539890000	298990000	240890000	10289	3805	9744	63700;63701;63702	85864;85865;85866;85867;85868;85869	85869			6	
EAHLPPGAMAAVGLSWEECK	1	Unmodified	2152.0081	0.0081452054	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	78.147	77.608	3	2.7346E-05	67105	160511_QHF_FH_JSI12i_3	83.213	74.734			1.2497	1.2707	39.208	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.1616	2.6905	NaN	1	1	Median	1.5072	1.517	NaN	1	1	Median	1.2497	1.2707	NaN	1	1	Median	385980000	103470000	282510000	0	0	0	168990000	29218000	139770000	115760000	42063000	73698000	101230000	32188000	69044000	10290	1650	9745	63703;63704;63705	85870;85871;85872;85873	85873			4	
EAHLTPYSLQAIK	1	Unmodified	1469.7878	0.78782897	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		53.897	53.178	3	7.5732E-05	45953	160511_QHF_FH_JSI11i_2	72.496	64.772			0.91718	1.0203	4.8426	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79637	0.98593	NaN	1	0	Median	1.0563	1.0558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128290000	64338000	63948000	0	0	0	61307000	33806000	27501000	66979000	30532000	36447000	0	0	0	10291	1430	9746	63706;63707	85874;85875	85874			2	
EAHQLFLEPEVLDPESVELK	1	Unmodified	2321.1791	0.17909316	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.426	3	17	1							4	4	8	5	94.173	93.83	2;3;4	5.5332E-24	82047	160511_QHF_FH_JSI11i_2	137.68	108.35			0.91214	0.96882	23.572	16	6	Median	1.1311	0.96425	24.531	3	2	Median	0.79532	0.96728	44.432	3	1	Median	1.0171	0.99368	8.501	5	1	Median	0.86094	0.97036	22.58	5	2	Median	1542700000	814460000	728240000	235400000	114540000	120870000	322630000	174220000	148410000	483740000	240870000	242870000	500930000	284840000	216090000	10292	1488	9747	63708;63709;63710;63711;63712;63713;63714;63715;63716;63717;63718;63719;63720;63721;63722;63723;63724;63725;63726;63727;63728	85876;85877;85878;85879;85880;85881;85882;85883;85884;85885;85886;85887;85888;85889;85890;85891;85892;85893;85894;85895;85896;85897;85898;85899;85900;85901;85902;85903;85904;85905;85906;85907;85908;85909;85910;85911;85912;85913;85914;85915;85916;85917;85918;85919	85907			43	
EAIAEHAK	1	Unmodified	867.44503	0.4450311	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	5.9733	5.575	2	0.0026803	3522	160511_QHF_FH_JSI12i_2	77.318	61.174			0.83036	0.86107	16.316	3	0	Plateau	1.3685	1.1555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83036	0.86107	NaN	1	0	Median	0.76697	0.88249	NaN	1	0	Median	196100000	105850000	90248000	53073000	21742000	31331000	0	0	0	76799000	45876000	30924000	66225000	38233000	27992000	10293	2835	9748	63729;63730;63731	85920;85921	85920			2	
EAIAIAK	1	Unmodified	714.42759	0.42759012	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				23.075	21.869	2	0.031164	18788	160511_QHF_FH_JSI9i_1	53.554	22.886			1.6624	1.3802	46.792	2	2	Median	1.6624	1.3802	46.792	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	313670000	134140000	179530000	313670000	134140000	179530000	0	0	0	0	0	0	0	0	0	10294	3736	9749	63732;63733	85922;85923	85922			2	
EAIAMLHK	1	Unmodified	911.48987	0.48987281	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		27.283	26.641	3	0.023878	22308	160511_QHF_FH_JSI11i_2	35.438	21.281			0.33204	0.36948	5.7118	2	2	Median	NaN	NaN	NaN	0	0	Median	0.30905	0.38471	NaN	1	1	Median	0.35673	0.35485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51883000	38001000	13881000	0	0	0	19510000	13965000	5545200	32372000	24036000	8336000	0	0	0	10295	3521	9750	63734;63735	85924;85925	85924			2	
EAIANYVK	1	Unmodified	906.48108	0.48108226	578	O75880	SCO1	Protein SCO1 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	29.59	28.905	2	0.00024038	25544	160511_QHF_FH_JSI11i_1	117.16	45.022			1.2815	1.3073	27.56	3	0	Plateau	1.019	0.84239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1794	1.1641	NaN	1	0	Median	1.3925	1.4575	NaN	1	0	Median	579530000	289230000	290300000	113370000	63088000	50280000	0	0	0	231970000	103240000	128730000	234190000	122900000	111290000	10296	578	9751	63736;63737;63738	85926;85927;85928	85926			3	
EAIDSPVSFLALHNQIR	0	Unmodified	1909.0058	0.005760665	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	82.54	82.169	3	1.0981E-06	71253	160511_QHF_FH_JSI12i_3	106.38	90.742			0.67775	0.69305	30.834	4	3	Linear	1.6173	1.3899	NaN	1	1	Median	1.0321	1.2793	NaN	1	1	Median	0.89195	0.82437	NaN	1	1	Median	0.75111	0.752	NaN	1	0	Median	264550000	148590000	115960000	30009000	10232000	19777000	28211000	9613700	18598000	113440000	78041000	35398000	92889000	50700000	42189000	10297	3904	9752	63739;63740;63741;63742	85929;85930;85931;85932	85932			4	
EAIDSYIK	1	Unmodified	937.47566	0.47566253	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.5	8					2	1			2	4	3	2	40.153	37.091	1;2	0.00020159	33388	160511_QHF_FH_JSI11i_1	120.46	90.884			1.0733	1.0956	15.687	11	0	Median	1.4562	1.2039	15.365	2	0	Median	0.93449	1.108	9.3247	4	0	Median	1.1551	1.1233	3.0096	3	0	Median	0.77169	0.81291	0.16489	2	0	Median	4780200000	2412800000	2367400000	979020000	403130000	575890000	1193500000	625990000	567500000	1299900000	626060000	673810000	1307800000	757650000	550190000	10298	2155	9753	63743;63744;63745;63746;63747;63748;63749;63750;63751;63752;63753	85933;85934;85935;85936;85937;85938;85939;85940;85941;85942;85943;85944;85945;85946;85947;85948;85949	85934			17	
EAIEGTYIDK	1	Unmodified	1137.5554	0.55536941	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.96	5	4	3		2	3				3	6	4	4	38.755	35.142	2	8.5351E-19	31846	160511_QHF_FH_JSI12i_1	171.56	151.01			1.0556	1.0952	19.396	15	3	Median	1.2878	1.0952	10.035	3	1	Plateau	0.89626	1.0696	20.518	5	1	Median	1.1044	1.0773	24.689	3	1	Median	0.87669	0.94437	18.713	4	0	Median	14670000000	8517100000	6153100000	3817800000	1902300000	1915400000	4538200000	2568000000	1970200000	3801800000	2584700000	1217100000	2512400000	1462100000	1050300000	10299	1996	9754	63754;63755;63756;63757;63758;63759;63760;63761;63762;63763;63764;63765;63766;63767;63768;63769;63770	85950;85951;85952;85953;85954;85955;85956;85957;85958;85959;85960;85961;85962;85963;85964;85965;85966;85967;85968;85969;85970;85971;85972;85973;85974;85975;85976;85977;85978	85957			29	
EAIEGTYIDKK	2	Unmodified	1265.6503	0.65033243	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	27.978	26.989	2;3	1.0006E-05	23585	160511_QHF_FH_JSI10i_2	123.63	102.16			1.3433	1.2043	74.158	6	5	Median	1.3433	1.1624	29.828	2	1	Median	0.78887	1.0104	NaN	1	1	Median	2.1068	2.143	NaN	1	1	Median	0.94697	1.0225	149.72	2	2	Median	226970000	97259000	129720000	95927000	40090000	55837000	12392000	7672500	4719900	84839000	35255000	49583000	33817000	14241000	19576000	10300	1996	9755	63771;63772;63773;63774;63775;63776	85979;85980;85981;85982;85983;85984	85984			5	
EAIEGTYIDKK	2	Acetyl (K)	1307.6609	0.66089712	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		52.22	42.781	2	1.9698E-57	23437	160513_QHF_FH_JSI11Kac_3	225.67	188.48			0.51651	0.55536	126.01	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1564	1.3537	NaN	1	0	Median	0.23069	0.22783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22255000	15628000	6626400	0	0	0	7163800	2976300	4187500	15091000	12652000	2438900	0	0	0	10301	1996	9755	63777;63778	85985	85985	2026		1	
EAIENATTNAEVLR	0	Unmodified	1529.7686	0.76855009	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	1	3	3	45.39	42.784	2	1.3938E-11	38012	160511_QHF_FH_JSI9i_1	196.67	161.15			1.0622	0.98035	16.783	9	7	Median	1.1288	0.93405	4.6539	2	2	Median	0.83064	0.99111	NaN	1	0	Median	1.0622	1.042	9.8179	3	2	Median	1.0367	1.0831	30.017	3	3	Plateau	1092200000	519670000	572540000	240250000	112690000	127570000	187170000	95225000	91940000	347160000	157300000	189860000	317620000	154450000	163170000	10302	4534	9756	63779;63780;63781;63782;63783;63784;63785;63786;63787	85986;85987;85988;85989;85990;85991;85992;85993;85994;85995;85996	85995			11	
EAIESAIGGNAYQHSK	1	Unmodified	1673.8009	0.80091285	2055	P63172	DYNLT1	Dynein light chain Tctex-type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	33.794	32.901	2;3	6.6439E-06	27970	160511_QHF_FH_JSI11i_2	82.837	72.461			0.67367	0.73148	13.899	3	1	Median	NaN	NaN	NaN	0	0	Median	0.67367	0.81467	NaN	1	1	Median	0.74679	0.73148	NaN	1	0	Median	0.55727	0.61831	NaN	1	0	Median	143700000	88312000	55392000	0	0	0	42223000	24867000	17356000	64757000	41730000	23027000	36725000	21716000	15009000	10303	2055	9757	63788;63789;63790;63791	85997;85998;85999;86000;86001;86002	85999			6	
EAIETIVAAMSNLVPPVELANPENQFR	0	Unmodified	2951.5063	0.50625774	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		6								1	2	2	1	103.07	102.98	3;4	6.0322E-15	90771	160511_QHF_FH_JSI11i_2	97.542	90.966			1.0785	1.1593	22.349	6	2	Median	1.246	1.0499	NaN	1	1	Median	0.92336	1.1334	16.473	2	1	Median	1.3971	1.4087	38.374	2	0	Median	1.0938	1.2515	NaN	1	0	Median	698840000	375570000	323270000	72542000	24474000	48067000	127830000	83256000	44571000	444810000	237790000	207020000	53664000	30051000	23613000	10304	2048	9758	63792;63793;63794;63795;63796;63797	86003;86004;86005;86006;86007	86005			5	
EAIHSQLLEK	1	Unmodified	1166.6295	0.62953741	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.25		9	1					6		4	3	5	4	32.223	28.065	2;3	2.0513E-05	23710	160511_QHF_FH_JSI12i_2	86.014	65.808			1.1435	1.0912	49.413	16	6	Median	1.4946	1.2457	22.499	4	1	Median	0.88447	1.0863	16.864	3	1	Median	1.0941	1.0882	60.085	5	2	Median	0.79304	0.87447	68.283	4	2	Median	1255300000	730590000	524680000	249000000	117080000	131920000	266580000	148110000	118470000	307920000	199590000	108330000	431760000	265800000	165960000	10305	461	9759	63798;63799;63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812;63813	86008;86009;86010;86011;86012;86013;86014;86015;86016;86017;86018;86019;86020;86021;86022;86023;86024	86008			16	
EAIHSQLLEKQK	2	Acetyl (K)	1464.7936	0.79364262	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		45.636	35.436	3	0.0024318	19997	160513_QHF_FH_JSI11Kac_5	53.448	43.911			0.61194	0.66796	134.16	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4445	1.7248	NaN	1	0	Median	0.25924	0.25867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11009000	7825300	3184000	0	0	0	2348200	896760	1451400	8661100	6928500	1732600	0	0	0	10306	461	9760	63814;63815	86025;86026	86025	235		2	
EAIICKNIPR	1	Acetyl (K)	1254.6754	0.67544174	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	61.27	50.407	2	5.4776E-06	28619	160513_QHF_FH_JSI11Kac_4	117.89	106.4			0.35843	0.37031	68.137	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23009	0.22873	NaN	1	0	Median	0.55835	0.59952	NaN	1	0	Median	24491000	18036000	6455500	0	0	0	0	0	0	21873000	16691000	5182800	2617900	1345200	1272700	10307	576	9761	63816;63817	86027;86028	86027	297		2	
EAIIPGSVYDR	0	Unmodified	1218.6245	0.62445203	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	50.614	50.074	2	0.00034814	45094	160511_QHF_FH_JSI10i_1	82.645	43.869			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10308	3904	9762	63818;63819	86029;86030	86030			2	
EAIIVGSIITK	1	Unmodified	1142.6911	0.69107503	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	76.262	65.671	2	0.0032691	34931	160513_QHF_FH_JSI11Kac_5	65.5	42.76			0.87681	0.67228	44.705	6	2	Linear	NaN	NaN	NaN	0	0	Median	0.76217	0.90496	23.63	2	0	Median	1.0208	0.98889	44.48	2	1	Median	1.3402	1.4785	68.691	2	1	Median	20653000	10639000	10014000	0	0	0	7942900	4102800	3840200	9517600	5057800	4459800	3192600	1478100	1714400	10309	2479	9763	63820;63821;63822;63823;63824;63825	86031;86032;86033;86034;86035	86035			5	
EAILAIHK	1	Unmodified	893.53345	0.53345218	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.55		9	7					3	8	7	5	9	6	34.082	29.975	2;3	0.0013143	25382	160511_QHF_FH_JSI11i_2	72.485	21.878			0.89767	0.96035	77.342	25	10	Median	0.75861	0.64797	24.888	7	0	Median	0.67787	0.82634	13.283	4	1	Median	2.3536	2.3379	88.537	8	6	Median	1.2312	1.3301	69.119	6	3	Median	1849000000	816400000	1032600000	435440000	269900000	165540000	126380000	76113000	50268000	854640000	265420000	589220000	432520000	204970000	227550000	10310	361	9764	63826;63827;63828;63829;63830;63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842;63843;63844;63845;63846;63847;63848;63849;63850;63851;63852	86036;86037;86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049;86050;86051;86052;86053;86054;86055;86056;86057;86058;86059;86060;86061;86062;86063;86064;86065;86066;86067;86068	86052			33	
EAILAIHKEAQR	1	Acetyl (K)	1419.7834	0.78341229	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.8	0.433								1	3			3	1	49.945	39.998	2;3	1.7464E-15	21725	160513_QHF_FH_JSI11Kac_6	139.86	129.55			0.51993	0.51145	22.228	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47944	0.46735	12.75	2	0	Median	0.61801	0.66448	NaN	1	0	Median	38816000	23975000	14841000	0	0	0	0	0	0	32819000	20712000	12107000	5997000	3262600	2734400	10311	361	9765	63853;63854;63855;63856	86069;86070;86071;86072;86073	86071	180		5	
EAILDIITSR	0	Unmodified	1129.6343	0.63428844	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.16	1	4	5				1	6		3	5	5	4	81.606	76.418	2	5.5812E-14	70495	160511_QHF_FH_JSI9i_2	157.99	88.57			1.0377	1.1162	24.284	13	2	Median	1.3972	1.1162	14.258	3	1	Median	0.91365	1.1093	40.804	3	0	Median	1.0377	1.0149	6.9272	3	1	Median	1.0818	1.1537	20.973	4	0	Median	1204300000	614170000	590090000	221460000	101090000	120360000	270170000	153030000	117140000	349400000	164170000	185230000	363240000	195870000	167360000	10312	891	9766	63857;63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868;63869;63870;63871;63872;63873	86074;86075;86076;86077;86078;86079;86080;86081;86082;86083;86084;86085;86086;86087;86088;86089;86090;86091;86092;86093;86094;86095;86096;86097;86098	86084			25	
EAILEYILHQK	1	Unmodified	1355.7449	0.74490152	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	4	3	4	2	84.455	82.511	2;3	3.954E-06	74904	160511_QHF_FH_JSI11i_3	104.79	96.884			0.98842	1.0026	25.294	11	1	Median	1.1707	1.0081	15.531	3	1	Plateau	0.78693	0.98537	2.4538	2	0	Median	0.8059	0.76566	31.049	4	0	Median	0.97877	1.0988	21.407	2	0	Median	398150000	199020000	199130000	67118000	30737000	36381000	59511000	31407000	28104000	158470000	79788000	78683000	113050000	57089000	55964000	10313	5554	9767	63874;63875;63876;63877;63878;63879;63880;63881;63882;63883;63884;63885;63886	86099;86100;86101;86102;86103;86104;86105;86106;86107;86108;86109;86110;86111;86112;86113;86114;86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125	86102			24	
EAINLLEPMTNDPVNYVR	0	Unmodified	2087.0357	0.035740164	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	9	6								4	5	3	3	94.141	93.784	2;3	2.8958E-82	85316	160511_QHF_FH_JSI12i_1	305.6	269.96			1.0505	1.1381	39.312	14	5	Median	1.402	1.1351	68.582	3	1	Median	0.95606	1.1412	42.957	5	3	Median	1.1315	1.1117	2.6078	3	0	Median	1.0283	1.0572	16.495	3	1	Plateau	700630000	339440000	361190000	102170000	40991000	61176000	258570000	138610000	119950000	173320000	82811000	90513000	166570000	77023000	89546000	10314	4272	9768	63887;63888;63889;63890;63891;63892;63893;63894;63895;63896;63897;63898;63899;63900;63901	86126;86127;86128;86129;86130;86131;86132;86133;86134;86135;86136;86137;86138;86139;86140;86141;86142;86143;86144;86145;86146;86147;86148;86149;86150;86151	86133			26	
EAINVEQAFQTIAR	0	Unmodified	1588.8209	0.82092001	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.65	0.654	9	9	2							5	6	5	4	85.878	85.242	2;3	2.3519E-177	77803	160511_QHF_FH_JSI11i_1	316.05	282.09			0.96967	1.0127	24.589	19	1	Median	1.2981	1.0656	8.9791	5	0	Median	0.85177	1.0398	13.407	5	0	Median	0.96967	0.97736	42.842	5	1	Median	0.9668	1.0104	11.401	4	0	Median	3926300000	1854600000	2071700000	735050000	295910000	439140000	1036600000	553060000	483580000	1229600000	601410000	628170000	925020000	404240000	520770000	10315	1728	9769	63902;63903;63904;63905;63906;63907;63908;63909;63910;63911;63912;63913;63914;63915;63916;63917;63918;63919;63920;63921	86152;86153;86154;86155;86156;86157;86158;86159;86160;86161;86162;86163;86164;86165;86166;86167;86168;86169;86170;86171;86172;86173;86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186	86152			35	
EAIQHPADEK	1	Unmodified	1136.5462	0.54620171	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.68	7	8					2	3		3	5	5	7	8.9189	6.3745	2;3	2.2056E-25	5543	160511_QHF_FH_JSI12i_1	185.33	142.93			0.92576	0.97691	20.999	19	3	Median	0.9134	0.77445	54.976	2	1	Median	0.72557	0.86143	14.27	5	1	Median	1.02	0.99641	5.9094	5	0	Median	0.93389	1.0096	17.853	7	1	Median	2831900000	1400600000	1431300000	151030000	74986000	76046000	853630000	460130000	393500000	1037600000	481100000	556480000	789690000	384410000	405280000	10316	5015	9770	63922;63923;63924;63925;63926;63927;63928;63929;63930;63931;63932;63933;63934;63935;63936;63937;63938;63939;63940;63941	86187;86188;86189;86190;86191;86192;86193;86194;86195;86196;86197;86198;86199;86200;86201;86202;86203;86204;86205;86206;86207;86208	86194			22	
EAIQLIAR	0	Unmodified	912.53927	0.53926584	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.94	4	4	4				3	3		3	5	5	5	46.301	42.225	2	0.00032001	36116	160511_QHF_FH_JSI12i_2	112.17	76.291			0.92686	1.0142	13.411	18	1	Median	1.3541	1.115	13.212	3	0	Median	0.8021	0.93574	8.8209	5	0	Median	0.95975	0.98923	18.776	5	0	Median	0.99982	1.0479	14.583	5	1	Median	3187300000	1627900000	1559400000	508350000	228240000	280120000	848430000	461760000	386670000	969100000	506760000	462340000	861410000	431100000	430310000	10317	1460	9771	63942;63943;63944;63945;63946;63947;63948;63949;63950;63951;63952;63953;63954;63955;63956;63957;63958;63959	86209;86210;86211;86212;86213;86214;86215;86216;86217;86218;86219;86220;86221;86222;86223;86224;86225;86226;86227;86228;86229;86230;86231;86232;86233;86234;86235;86236	86213			28	
EAIQQQQNQLVWVSEGK	1	Unmodified	1984.0014	0.0014035686	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				60.604	59.5	2	2.5338E-10	52828	160511_QHF_FH_JSI9i_1	161.63	133.77			0.67866	0.55087	25.785	2	2	Median	0.67866	0.55087	25.785	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33517000	19459000	14058000	33517000	19459000	14058000	0	0	0	0	0	0	0	0	0	10318	2253	9772	63960;63961	86237;86238	86237			2	
EAIREHQMAK	1	Unmodified	1211.6081	0.60809046	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								2	2		7.2608	7.0004	2;3	0.00041415	4651	160511_QHF_FH_JSI11i_3	56.202	30.765			0.68528	0.70722	14.522	4	1	Median	NaN	NaN	NaN	0	0	Median	0.56107	0.63474	15.63	2	1	Median	0.81197	0.75444	9.4801	2	0	Median	NaN	NaN	NaN	0	0	Median	443760000	274310000	169450000	0	0	0	201430000	133420000	68011000	242320000	140880000	101440000	0	0	0	10319	1220	9773	63962;63963;63964;63965	86239;86240;86241;86242	86240			4	
EAISDEDEDEALYQK	1	Unmodified	1753.753	0.75301918	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			42.176	41.765	2	1.8627E-12	37511	160511_QHF_FH_JSI10i_1	115.14	100.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10320	4580	9774	63966	86243	86243			1	
EAISDLQQLWK	1	Unmodified	1329.6929	0.69286595	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	80.131	79.497	2	1.4642E-07	68592	160511_QHF_FH_JSI12i_2	123.88	104.61			0.91526	0.93455	11.471	8	0	Median	1.1303	0.95107	19.866	2	0	Median	0.71351	0.86235	3.9213	2	0	Median	0.95152	0.91842	16.64	2	0	Median	0.91526	0.99921	2.0124	2	0	Median	488510000	260980000	227530000	80260000	41478000	38782000	142270000	85182000	57090000	136210000	68910000	67299000	129770000	65409000	64357000	10321	602	9775	63967;63968;63969;63970;63971;63972;63973;63974	86244;86245;86246;86247;86248;86249;86250	86245			6	
EAISDSLLRK	1	Unmodified	1130.6295	0.62953741	4748	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.411	38.231	3	0.055166	32519	160511_QHF_FH_JSI12i_3	22.72	16.061			1.5289	1.4767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5289	1.4767	NaN	1	1	Median	44365000	19960000	24405000	0	0	0	0	0	0	0	0	0	44365000	19960000	24405000	10322	4748	9776	63975	86251	86251			1	
EAISTSK	1	Unmodified	734.38103	0.38103386	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	7.6226	2.6976	2	0.051491	3130	160513_QHF_FH_JSI11Kac_3	51.335	33.011			0.76604	0.7983	11.101	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93625	0.94854	NaN	1	0	Median	0.74047	0.78449	2.4679	2	0	Median	163900000	92154000	71750000	0	0	0	0	0	0	6198500	3356100	2842400	157710000	88798000	68908000	10323	720	9777	63976;63977;63978	86252;86253	86253			2	
EAITEAVEAPAAAR	0	Unmodified	1397.7151	0.71505795	3540	Q8N5A5	ZGPAT	Zinc finger CCCH-type with G patch domain-containing protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	44.951	44.018	2	0.00079338	39035	160511_QHF_FH_JSI9i_1	83.182	72.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10324	3540	9778	63979;63980	86254;86255	86255			2	
EAITHLLGVALTR	0	Unmodified	1392.8089	0.80889876	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.54		4	9						2	4	4	4	3	77.484	75.751	2;3	4.9739E-22	67957	160511_QHF_FH_JSI11i_3	173.04	143.56			1.0038	0.97738	19.713	15	3	Median	1.1605	1.0709	7.1758	4	2	Linear	0.93594	1.0993	7.0461	4	0	Median	1.007	0.97481	4.7763	4	0	Median	0.861	0.88567	30.963	3	1	Plateau	886560000	446900000	439650000	91641000	41676000	49966000	232760000	117590000	115170000	301060000	150100000	150970000	261090000	137540000	123550000	10325	2605	9779	63981;63982;63983;63984;63985;63986;63987;63988;63989;63990;63991;63992;63993;63994;63995	86256;86257;86258;86259;86260;86261;86262;86263;86264;86265;86266;86267;86268;86269;86270;86271;86272;86273;86274;86275;86276;86277;86278;86279;86280;86281;86282;86283;86284;86285;86286;86287;86288	86259			32	
EAIVAALLTR	0	Unmodified	1055.6339	0.63389451	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.041	74.756	2	0.014736	64948	160511_QHF_FH_JSI12i_3	52.278	39.922			1.4003	1.442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4003	1.442	NaN	1	1	Median	23559000	8319100	15239000	0	0	0	0	0	0	0	0	0	23559000	8319100	15239000	10326	4096	9780	63996	86289	86289			1	
EAIVNSCVFVHQTLHQANAR	0	Unmodified	2293.1386	0.13858253	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	61.275	52.175	4	0.0002146	28669	160513_QHF_FH_JSI10Kac_6	83.063	67.582			0.94438	1.1294	28.645	4	3	Median	NaN	NaN	NaN	0	0	Median	0.94438	1.1294	10.315	2	2	Median	0.76733	0.76921	NaN	1	1	Median	1.415	1.524	NaN	1	0	Median	53026000	25640000	27386000	0	0	0	39402000	18982000	20421000	7722900	4671900	3051000	5900800	1986100	3914700	10327	2517	9781	63997;63998;63999;64000	86290;86291;86292;86293	86292			4	
EAIVTSEELGQDLEHVEVLQK	1	Unmodified	2365.2013	0.20128517	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			87.636	87.518	3	4.0672E-10	79320	160511_QHF_FH_JSI10i_1	114.37	95.585			0.63739	0.74512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63739	0.74512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51834000	35368000	16466000	0	0	0	51834000	35368000	16466000	0	0	0	0	0	0	10328	2470	9782	64001	86294	86294			1	
EAIWAEVEK	1	Unmodified	1073.5393	0.53932542	5601	Q9Y3R5	DOPEY2	Protein dopey-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.711	19.588	2	0.035582	16594	160511_QHF_FH_JSI11i_1	38.962	11.961			1.1671	1.146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1671	1.146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	394310000	192490000	201820000	0	0	0	0	0	0	394310000	192490000	201820000	0	0	0	10329	5601	9783	64002	86295	86295			1	
EAIYSGYIR	0	Unmodified	1070.5397	0.53965977	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.955	43.568	2	0.017683	37333	160511_QHF_FH_JSI12i_2	42.864	28.082			1.0186	1.0974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0186	1.0974	NaN	1	0	Median	56977000	24980000	31997000	0	0	0	0	0	0	0	0	0	56977000	24980000	31997000	10330	28	9784	64003	86296	86296			1	
EAKPDELMDSK	2	Unmodified	1261.586	0.58601761	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.322	15	2								3	5	6	3	23.166	22.68	2;3	0.00013264	19292	160511_QHF_FH_JSI12i_1	65.809	5.6519			1.132	0.9839	82.297	16	9	Median	1.1909	0.96844	5.4409	3	1	Plateau	0.6368	0.78571	113.76	5	4	Median	1.0869	1.0712	93.989	6	3	Median	1.036	1.1094	16.219	2	1	Median	3909200000	2262300000	1646800000	619210000	287300000	331910000	952570000	620410000	332160000	1529200000	903010000	626200000	808160000	451630000	356540000	10331	5185	9785	64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020	86297;86298;86299;86300;86301;86302;86303;86304;86305;86306;86307;86308;86309;86310;86311	86301			15	
EAKPDELMDSK	2	Oxidation (M)	1277.5809	0.58093224	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	1	By MS/MS	By MS/MS			1	0	2									1	1			11.87	11.327	3	0.039725	9018	160511_QHF_FH_JSI10i_1	37.594	11.235			1.4605	1.4537	22.067	2	0	Median	2.0039	1.6992	NaN	1	0	Median	1.0644	1.2437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152620000	68203000	84421000	64939000	22678000	42261000	87685000	45525000	42160000	0	0	0	0	0	0	10332	5185	9785	64021;64022	86312	86312			1	
EAKPDELMDSKLR	2	Acetyl (K)	1572.7818	0.78175731	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	59.376	48.714	3	0.001561	27292	160513_QHF_FH_JSI12Kac_4	74.853	17.526			0.75524	0.82893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75524	0.82893	NaN	1	0	Median	22651000	11421000	11229000	0	0	0	0	0	0	0	0	0	22651000	11421000	11229000	10333	5185	9786	64023	86313	86313	3329		1	
EAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEER	1	Unmodified	3498.6274	0.62743132	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	69.496	69.083	3	1.8164E-16	62509	160511_QHF_FH_JSI10i_1	86.936	82.127			0.83331	0.90308	11.529	3	2	Median	NaN	NaN	NaN	0	0	Median	0.83331	0.91777	NaN	1	1	Median	0.7686	0.74596	NaN	1	1	Median	0.9049	0.90308	NaN	1	0	Median	45127000	30013000	15114000	0	0	0	12281000	7973900	4306800	16348000	12166000	4182000	16498000	9873000	6625000	10334	3064	9787	64024;64025;64026	86314;86315;86316;86317	86317			4	
EALAEAALESPRPALVR	0	Unmodified	1791.9843	0.98429694	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.4	0.49		6	4							2	4	2	2	62.793	61.92	2;3	2.4603E-22	51884	160511_QHF_FH_JSI10i_3	173.03	162.97			1.1055	1.0602	16.089	10	0	Median	1.2321	1.0398	7.1489	2	0	Median	0.80878	0.94992	6.2199	4	0	Median	1.1801	1.1517	1.6518	2	0	Median	1.2895	1.3488	20.363	2	0	Median	2086700000	1111300000	975390000	511800000	241640000	270160000	1006900000	592390000	414470000	506970000	247460000	259500000	61072000	29813000	31259000	10335	198	9788	64027;64028;64029;64030;64031;64032;64033;64034;64035;64036	86318;86319;86320;86321;86322;86323;86324;86325;86326;86327;86328;86329;86330	86321			13	
EALAFIIR	0	Unmodified	931.5491	0.54910224	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.5		3						3	2	1	2	4	1	74.27	67.66	2	0.00019938	60069	160511_QHF_FH_JSI11i_2	120.65	80.982			0.97688	0.94823	23.296	8	2	Median	1.174	0.95866	NaN	1	0	Median	0.93055	1.1378	27.746	2	0	Median	0.97688	0.95137	25.327	4	2	Median	0.81387	0.93223	NaN	1	0	Median	212640000	116330000	96315000	5363800	2326900	3036900	46655000	29772000	16883000	113390000	57144000	56248000	47232000	27084000	20147000	10336	150	9789	64037;64038;64039;64040;64041;64042;64043;64044	86331;86332;86333;86334;86335;86336;86337;86338;86339	86336			9	
EALAGLLVTYPNSQEAENWKK	2	Unmodified	2360.2012	0.20122559	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	79.24	78.985	3	0.00012799	68588	160511_QHF_FH_JSI12i_3	57.989	45.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10337	5458	9790	64045	86340	86340			1	
EALATLK	1	Unmodified	744.43815	0.43815481	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.637	23.317	2	0.013326	20705	160511_QHF_FH_JSI12i_1	67.981	7.2209			1.2534	1.3289	36.708	3	1	Plateau	NaN	NaN	NaN	0	0	Median	2.1095	2.4434	NaN	1	1	Median	1.2976	1.2634	NaN	1	0	Median	1.2534	1.3289	NaN	1	0	Median	977670000	390960000	586710000	0	0	0	163310000	58349000	104960000	384560000	152100000	232460000	429800000	180520000	249290000	10338	5426	9791	64046;64047;64048	86341;86342;86343;86344	86343			4	
EALDDVTLPR	0	Unmodified	1127.5823	0.58225287	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	1	3	53.025	52.358	2	7.8582E-05	46685	160511_QHF_FH_JSI9i_1	99.013	61.201			1.1326	0.95928	12.789	4	2	Linear	1.2968	1.0806	NaN	1	1	Median	0.82934	0.98536	NaN	1	0	Median	1.0383	1.003	NaN	1	0	Median	1.2354	1.3033	NaN	1	1	Median	642360000	318310000	324050000	164940000	84535000	80400000	174580000	85032000	89553000	159400000	77741000	81659000	143440000	71005000	72438000	10339	1060	9792	64049;64050;64051;64052;64053;64054;64055	86345;86346;86347;86348;86349;86350;86351;86352	86352			8	
EALDVLGAVLK	1	Unmodified	1126.6598	0.6597749	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	90.187	89.628	2	4.4634E-18	77414	160511_QHF_FH_JSI12i_2	161.27	100.68			0.93777	0.95995	12.306	9	0	Median	1.0941	0.89891	4.8498	2	0	Median	0.77827	0.93653	16.142	3	0	Plateau	1.0439	1.053	9.3269	2	0	Median	0.90231	0.96872	1.2851	2	0	Median	464730000	236660000	228070000	87215000	39214000	48001000	125560000	72743000	52812000	132930000	68666000	64266000	119030000	56042000	62988000	10340	3844	9793	64056;64057;64058;64059;64060;64061;64062;64063;64064	86353;86354;86355;86356;86357;86358;86359;86360;86361;86362;86363;86364;86365;86366;86367;86368	86356			16	
EALEEFYGRK	1	Unmodified	1240.6088	0.60880197	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							3	2	2	3	37.282	36.404	2;3	9.6136E-05	31004	160511_QHF_FH_JSI11i_2	104.2	66.644			0.83644	0.82506	44.537	10	5	Median	0.53751	0.46665	47.125	3	2	Plateau	0.98364	1.2125	64.343	2	1	Median	0.75067	0.75791	21.906	2	1	Median	0.64799	0.73068	45.499	3	1	Plateau	661680000	381470000	280200000	123970000	75797000	48168000	132150000	76835000	55315000	232900000	132850000	100050000	172660000	95991000	76669000	10341	4680	9794	64065;64066;64067;64068;64069;64070;64071;64072;64073;64074	86369;86370;86371;86372;86373;86374;86375;86376;86377;86378	86375			10	
EALEHLCTYEK	1	Unmodified	1391.6391	0.63911582	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	33.016	31.694	2	0.0018339	26858	160511_QHF_FH_JSI12i_2	65.347	48.321			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10342	4518	9795	64075	86379	86379			1	
EALEKTEK	2	Acetyl (K)	988.50769	0.50769094	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	20.902	13.653	2	0.022497	9168	160513_QHF_FH_JSI11Kac_3	60.828	25.533			0.67367	0.69879	14.583	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78366	0.7747	NaN	1	0	Median	0.57911	0.63033	NaN	1	0	Median	12226000	7114000	5111800	0	0	0	0	0	0	8148600	4739300	3409400	4077100	2374700	1702500	10343	361	9796	64076;64077	86380	86380	181		1	
EALELTDTGLLSGSEER	0	Unmodified	1818.8847	0.88470206	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	2	3	3	74.114	73.62	2;3	1.642E-60	66650	160511_QHF_FH_JSI10i_1	186.94	161.04			0.9102	0.91915	14.154	7	4	Median	1.2109	0.99625	NaN	1	0	Median	0.73065	0.84903	NaN	1	1	Median	1.0136	0.98037	21.342	2	1	Median	0.85014	0.89576	16.384	3	2	Plateau	753790000	408200000	345590000	111350000	49747000	61602000	149540000	83579000	65965000	182950000	98733000	84217000	309950000	176140000	133810000	10344	2517	9797	64078;64079;64080;64081;64082;64083;64084;64085;64086	86381;86382;86383;86384;86385;86386;86387;86388;86389;86390	86388			8	
EALENANTNTEVLK	1	Unmodified	1544.7682	0.76821573	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.55	5				5	3				1	3	4	5	42.406	37.539	2	7.7268E-40	33334	160511_QHF_FH_JSI10i_1	198.81	179.05			0.94562	0.96975	20.274	10	4	Median	1.1021	0.9013	NaN	1	0	Median	0.74874	0.88312	14.562	2	0	Median	0.97343	0.9607	15.665	3	2	Median	0.99855	1.065	25.41	4	2	Median	2428500000	1198400000	1230000000	447190000	235240000	211950000	464610000	249150000	215460000	972490000	465520000	506970000	544180000	248520000	295660000	10345	4708	9798	64087;64088;64089;64090;64091;64092;64093;64094;64095;64096;64097;64098;64099	86391;86392;86393;86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407	86397			17	
EALENEPGPQGTLSGAGSR	0	Unmodified	1868.8864	0.88643339	4097	Q96GS4	C17orf59	Uncharacterized protein C17orf59	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.519	37.914	2	8.5084E-06	34400	160511_QHF_FH_JSI12i_1	96.591	61.704			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10346	4097	9799	64100	86408	86408			1	
EALEPSGENVIQNK	1	Unmodified	1526.7577	0.75765105	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	39.802	39.058	2	0.00014868	34516	160511_QHF_FH_JSI9i_1	110.93	84.953			0.92113	0.89329	75.63	5	3	Median	0.97021	0.79012	62.911	2	2	Median	0.49591	0.57129	NaN	1	1	Median	0.92113	0.89329	NaN	1	0	Median	3.2589	3.342	NaN	1	0	Median	408340000	228890000	179450000	108280000	55695000	52586000	120540000	86279000	34262000	109260000	65602000	43659000	70259000	21316000	48942000	10347	533	9800	64101;64102;64103;64104;64105	86409;86410;86411;86412;86413	86413			5	
EALESVEVLIK	1	Unmodified	1228.6915	0.69146896	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		74.679	74.427	2	0.0014363	67405	160511_QHF_FH_JSI10i_1	76.228	45.154			0.4554	0.47092	4.5352	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43694	0.48627	NaN	1	1	Median	0.47464	0.45606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24683000	17682000	7001200	0	0	0	12895000	8506500	4388500	11788000	9175300	2612700	0	0	0	10348	2485	9801	64106;64107	86414;86415	86415			2	
EALEVDWSSEK	1	Unmodified	1291.5932	0.59321148	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	51.862	51.19	2	9.7983E-09	46623	160511_QHF_FH_JSI12i_1	128.03	98.948			1.2296	1.1288	22.098	4	3	Linear	0.97589	0.81192	NaN	1	1	Median	1.1141	1.3058	NaN	1	1	Median	1.0219	1.0091	NaN	1	1	Median	1.2291	1.2628	NaN	1	0	Median	778590000	375750000	402850000	142660000	69948000	72707000	250970000	118770000	132200000	196400000	100220000	96176000	188570000	86799000	101770000	10349	5233	9802	64108;64109;64110;64111;64112	86416;86417;86418;86419;86420	86417			4	
EALGGINELK	1	Unmodified	1042.5659	0.56587452	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	44.572	43.811	2	0.010552	39006	160511_QHF_FH_JSI9i_1	47.561	28.467			0.9727	1.1032	4.2602	3	0	Plateau	1.2933	1.1032	NaN	1	0	Median	0.9727	1.1391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97717	1.0469	NaN	1	0	Median	110970000	58259000	52715000	31645000	13944000	17701000	42090000	25392000	16698000	0	0	0	37239000	18923000	18316000	10350	3009	9803	64113;64114;64115	86421;86422	86422			2	
EALGGQAEEFSGR	0	Unmodified	1349.6212	0.62115757	4245	Q96SQ9	CYP2S1	Cytochrome P450 2S1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	34.128	33.739	2	0.011521	30521	160511_QHF_FH_JSI12i_1	46.985	39.742			1.1951	1.4013	43.174	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1832	1.4013	NaN	1	0	Median	2.0616	2.0266	NaN	1	0	Median	3.1157	3.3133	NaN	1	0	Median	138300000	47288000	91016000	0	0	0	55800000	21031000	34769000	45015000	17048000	27968000	37488000	9209000	28279000	10351	4245	9804	64116;64117;64118	86423	86423			1	
EALGGQALYPHVLVK	1	Unmodified	1593.8879	0.88787736	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.15		7	2						1	2	1	3	4	63.667	62.036	2;3	4.3879E-10	53479	160511_QHF_FH_JSI12i_2	151.26	119.62			0.27394	0.31577	125.38	10	9	Median	0.14708	0.12358	8.2725	2	2	Median	0.29491	0.36432	NaN	1	1	Median	0.48259	0.48899	166.81	3	3	Median	0.43009	0.47341	157.78	4	3	Median	4879200000	4128500000	750710000	1129100000	1001100000	127950000	94431000	71717000	22714000	2437900000	2061600000	376260000	1217800000	993970000	223790000	10352	4442	9805	64119;64120;64121;64122;64123;64124;64125;64126;64127;64128	86424;86425;86426;86427;86428;86429;86430;86431;86432;86433;86434	86426			11	
EALGIPAAASFK	1	Unmodified	1173.6394	0.63937381	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.93	4	1	1				3			1	4	2	2	67.493	63.394	2	5.1766E-11	58233	160511_QHF_FH_JSI12i_1	150.1	137.51			0.3494	0.41196	76.542	9	2	Median	0.98623	0.80239	NaN	1	0	Median	0.26918	0.32032	81.67	4	2	Median	0.50691	0.49376	66.675	2	0	Median	0.60756	0.65692	0.27252	2	0	Median	3091000000	2332500000	758550000	288390000	140560000	147830000	1858200000	1607500000	250730000	544080000	343350000	200730000	400390000	241130000	159260000	10353	1381	9806	64129;64130;64131;64132;64133;64134;64135;64136;64137	86435;86436;86437;86438;86439;86440;86441;86442;86443;86444;86445;86446;86447;86448;86449;86450	86441			16	
EALGQAGVSETDNSSQDALGLSK	1	Unmodified	2276.0768	0.076812936	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	55.448	54.535	3	7.0344E-07	49621	160511_QHF_FH_JSI12i_1	64.68	50.425			0.79003	0.72999	2.6794	2	2	Median	0.83926	0.71629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74368	0.74396	NaN	1	1	Median	62673000	41609000	21065000	37565000	23766000	13799000	0	0	0	0	0	0	25108000	17842000	7265800	10354	2357	9807	64138;64139	86451;86452	86451			2	
EALGQNEESPK	1	Unmodified	1200.5622	0.5622457	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	13.419	12.757	2	0.00060997	10107	160511_QHF_FH_JSI9i_1	83.869	54.911			0.92248	0.84991	18.404	2	2	Median	1.1792	0.96803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72166	0.7462	NaN	1	1	Median	63092000	29334000	33758000	33970000	14144000	19825000	0	0	0	0	0	0	29122000	15189000	13932000	10355	4792	9808	64140;64141	86453;86454	86454			2	
EALHELAQEMEGSDKPQELAR	1	Unmodified	2380.1329	0.13288803	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	60.27	59.744	3	1.8596E-13	52806	160511_QHF_FH_JSI11i_3	124.86	117.76			1.0394	1.1088	43.646	4	3	Median	1.7855	1.5065	NaN	1	1	Median	1.1599	1.4299	NaN	1	1	Median	0.93135	0.85982	NaN	1	0	Median	0.61028	0.60294	NaN	1	1	Median	168530000	82648000	85879000	22241000	6535400	15705000	47184000	21766000	25418000	72221000	34294000	37927000	26881000	20053000	6828500	10356	714	9809	64142;64143;64144;64145	86455;86456;86457;86458;86459;86460	86457			6	
EALIAASETLK	1	Unmodified	1144.634	0.63395408	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.44	4	4	2			1	3			4	4	3	3	53.317	49.278	2	3.8132E-05	42183	160511_QHF_FH_JSI12i_2	97.472	68.554			0.7895	0.86808	84.247	12	6	Median	0.33189	0.27787	187.54	2	2	Median	0.48988	1.0525	45.143	4	1	Linear	0.53191	0.53374	45.304	3	2	Median	0.74612	0.81972	84.584	3	1	Median	2088100000	1727000000	361130000	567580000	506100000	61481000	470660000	372690000	97972000	485020000	369720000	115310000	564830000	478470000	86364000	10357	4989	9810	64146;64147;64148;64149;64150;64151;64152;64153;64154;64155;64156;64157;64158;64159	86461;86462;86463;86464;86465;86466;86467;86468;86469;86470;86471;86472;86473;86474;86475;86476;86477;86478	86463			18	
EALKQSATDPR	1	Acetyl (K)	1256.6361	0.63607935	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		29.216	20.687	2	0.034769	12846	160513_QHF_FH_JSI11Kac_3	51.927	32.656			0.38399	0.37137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38399	0.37137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1544500	1330500	214020	0	0	0	0	0	0	1544500	1330500	214020	0	0	0	10358	1409	9811	64160	86479	86479			1	
EALLAQREEEVQQGQQDLEK	1	Unmodified	2340.1557	0.15573196	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		49.477	48.807	3	3.901E-14	43018	160511_QHF_FH_JSI10i_2	146.13	134.17			1.2363	1.4121	16.025	3	2	Plateau	1.7077	1.4121	NaN	1	1	Median	0.93266	1.136	NaN	1	0	Median	1.6389	1.5528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	99298000	32092000	67206000	26249000	7325800	18923000	35755000	17876000	17879000	37294000	6889900	30404000	0	0	0	10359	2309	9812	64161;64162;64163	86480;86481;86482;86483	86482			4	
EALLELLR	0	Unmodified	955.57023	0.57023162	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	80.457	79.629	2	0.0012043	68876	160511_QHF_FH_JSI12i_2	109.86	71.624			2.4186	2.494	17.418	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4975	1.815	NaN	1	1	Median	2.4186	2.494	NaN	1	1	Median	1.6617	1.8803	NaN	1	1	Median	214540000	61630000	152910000	0	0	0	55405000	18459000	36947000	90905000	24516000	66388000	68228000	18655000	49573000	10360	2479	9813	64164;64165;64166	86484;86485;86486	86484			3	
EALLGDTGTGDFLK	1	Unmodified	1435.7195	0.71947463	125	O00400	SLC33A1	Acetyl-coenzyme A transporter 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	72.575	72	2	1.6049E-05	64016	160511_QHF_FH_JSI9i_1	84.479	70.361			0.67051	0.6656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67051	0.6656	NaN	1	1	Median	15803000	10700000	5102600	0	0	0	0	0	0	0	0	0	15803000	10700000	5102600	10361	125	9814	64167;64168	86487;86488	86488			2	
EALLGVQEDVDEYVK	1	Unmodified	1705.841	0.84104633	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	78.892	78.314	2	8.6076E-07	71323	160511_QHF_FH_JSI12i_1	141.38	83.545			1.835	1.4859	32.063	3	3	Median	1.835	1.4859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5595	2.48	NaN	1	1	Median	1.335	1.3744	NaN	1	1	Median	211920000	72812000	139100000	42251000	12912000	29340000	0	0	0	97545000	30304000	67242000	72119000	29596000	42523000	10362	2524	9815	64169;64170;64171	86489;86490;86491	86490			3	
EALLLLSWK	1	Unmodified	1071.6328	0.63283187	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	2	2	1	92.1	90.176	2	0.0001327	43658	160513_QHF_FH_JSI11Kac_6	98.033	36.034			0.97479	0.91526	48.401	6	4	Median	1.086	0.95391	NaN	1	1	Median	0.79919	0.9478	88.46	2	2	Median	0.7035	0.67166	37.912	2	1	Median	1.0335	1.1711	NaN	1	0	Median	91521000	49080000	42441000	5531500	2970600	2560800	13603000	6183000	7419800	62768000	35207000	27561000	9618100	4719500	4898600	10363	3308	9816	64172;64173;64174;64175;64176;64177	86492;86493;86494;86495;86496;86497;86498;86499	86494			8	
EALLLVTVLTSLSK	1	Unmodified	1485.9018	0.90179609	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.76	90.33	2;3	1.7224E-30	54900	160513_QHF_FH_JSI10Kac_6	158.4	133.55			0.48496	0.48193	50.96	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36609	0.33612	NaN	1	1	Median	0.64243	0.691	NaN	1	1	Median	82893000	57039000	25855000	0	0	0	0	0	0	55988000	41585000	14404000	26905000	15454000	11451000	10364	5034	9817	64178;64179;64180;64181	86500;86501;86502;86503	86503			4	
EALLQASR	0	Unmodified	886.48723	0.48723027	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	4.6	4.72		3	1				1			1		3	1	23.684	21.042	2	8.1545E-06	17445	160511_QHF_FH_JSI11i_2	122.18	58.87			0.96607	1.018	14.592	4	1	Median	1.3461	1.1243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90287	0.88017	8.5593	2	1	Median	0.99186	1.1082	NaN	1	0	Median	1403000000	693260000	709710000	582520000	233660000	348860000	0	0	0	137680000	74558000	63118000	682780000	385040000	297740000	10365	1270	9818	64182;64183;64184;64185;64186	86504;86505;86506;86507	86507			4	
EALLQISIPFLLK	1	Unmodified	1483.9014	0.90140216	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.63	90.216	2	2.9784E-10	53480	160513_QHF_FH_JSI10Kac_6	162.26	135.59			0.82591	0.84029	17.16	2	2	Median	0.86467	0.74428	NaN	1	1	Median	0.78888	0.9487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	262890000	146430000	116450000	117530000	60864000	56667000	145360000	85569000	59787000	0	0	0	0	0	0	10366	4260	9819	64187;64188	86508;86509	86509			2	
EALLSIGK	1	Unmodified	829.49092	0.49091866	3997	Q96C01	FAM136A	Protein FAM136A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.145	45.651	2	0.0083499	40894	160511_QHF_FH_JSI10i_1	57.047	33.524			0.79764	0.84362	4.6019	3	0	Median	NaN	NaN	NaN	0	0	Median	0.756	0.89929	NaN	1	0	Median	0.88922	0.84362	NaN	1	0	Median	0.79764	0.82245	NaN	1	0	Median	164120000	80848000	83277000	0	0	0	60011000	31301000	28709000	62605000	29175000	33430000	41509000	20372000	21137000	10367	3997	9820	64189;64190;64191	86510;86511;86512	86512			3	
EALLSSAVDHGSDEVK	1	Unmodified	1655.8002	0.80024414	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.66	8	8	10				4	6		10	7	9	10	46.108	42.799	2;3	2.0622E-137	37177	160511_QHF_FH_JSI11i_2	293.47	274.66			1.0266	0.97985	25.749	35	9	Median	1.3838	0.71923	38.52	10	3	Linear	0.79722	0.95003	13.536	7	0	Median	1.0306	0.99035	22.379	8	3	Median	0.90778	0.94144	16.164	10	3	Median	12207000000	6378300000	5828200000	2070400000	964600000	1105900000	3545400000	2032700000	1512700000	3822500000	1933200000	1889300000	2768300000	1447800000	1320500000	10368	2090	9821	64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210;64211;64212;64213;64214;64215;64216;64217;64218;64219;64220;64221;64222;64223;64224;64225;64226;64227	86513;86514;86515;86516;86517;86518;86519;86520;86521;86522;86523;86524;86525;86526;86527;86528;86529;86530;86531;86532;86533;86534;86535;86536;86537;86538;86539;86540;86541;86542;86543;86544;86545;86546;86547;86548;86549;86550;86551;86552;86553;86554;86555;86556;86557;86558;86559;86560;86561;86562;86563;86564;86565;86566;86567;86568;86569;86570;86571;86572;86573;86574;86575;86576;86577;86578;86579;86580;86581;86582;86583;86584;86585;86586;86587;86588	86572			76	
EALLVANGTPR	0	Unmodified	1139.6299	0.62987176	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.5	6.5	3						3				2	1	3	41.893	37.446	2	0.0021658	33523	160511_QHF_FH_JSI10i_1	86.898	70.358			1.2266	1.2871	9.8438	5	4	Median	NaN	NaN	NaN	0	0	Median	0.90048	1.0401	NaN	1	1	Median	1.2807	1.2871	NaN	1	0	Median	1.2266	1.2929	2.8782	3	3	Median	226030000	105810000	120220000	0	0	0	86175000	41023000	45152000	3616700	1516300	2100300	136240000	63271000	72970000	10369	3479	9822	64228;64229;64230;64231;64232;64233	86589;86590;86591;86592;86593;86594	86592			6	
EALMAHGLGNR	0	Unmodified	1167.5819	0.58187571	1037	P13716	ALAD	Delta-aminolevulinic acid dehydratase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			25.918	24.625	2	0.0038263	20336	160511_QHF_FH_JSI10i_3	57.96	51.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10370	1037	9823	64234	86595	86595			1	
EALNLAQMQEQTLQLEQQSK	1	Unmodified	2329.1584	0.1583745	2957	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	82.752	82.25	3	8.3216E-06	74583	160511_QHF_FH_JSI10i_1	71.148	65.011			0.68368	0.78921	49.369	3	1	Plateau	0.39948	0.32556	NaN	1	1	Median	0.68368	0.8042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71329	0.72125	NaN	1	0	Median	72239000	44268000	27971000	16582000	14398000	2184200	28579000	15332000	13248000	0	0	0	27078000	14538000	12540000	10371	2957	9824	64235;64236;64237	86596;86597	86596			2	
EALNMLTWR	0	Unmodified	1132.5699	0.56991404	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.84	68.949	2	0.00047003	61220	160511_QHF_FH_JSI10i_2	93.938	41.92			0.90196	0.88479	7.0233	4	0	Median	0.98087	0.8358	NaN	1	0	Median	0.68222	0.83971	NaN	1	0	Median	0.95274	0.95729	NaN	1	0	Median	0.85388	0.93229	NaN	1	0	Median	369270000	213180000	156090000	80970000	47276000	33695000	89364000	57640000	31724000	118570000	61291000	57284000	80360000	46975000	33386000	10372	3173	9825	64238;64239;64240;64241	86598;86599;86600;86601;86602	86602			4	
EALNSCNK	1	Unmodified	934.41783	0.41783007	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.4919	3.1941	2	1.0788E-14	3650	160511_QHF_FH_JSI11i_1	170.66	74.872			1.0521	1.0715	13.957	7	0	Median	1.3147	1.0715	NaN	1	0	Median	0.87628	1.0297	16.2	2	0	Median	1.0787	1.0527	5.5181	2	0	Median	1.0864	1.1429	27.478	2	0	Median	1792900000	925230000	867630000	276030000	128220000	147820000	405830000	213460000	192370000	515410000	268920000	246480000	595590000	314630000	280960000	10373	1154	9826	64242;64243;64244;64245;64246;64247;64248	86603;86604;86605;86606;86607;86608;86609;86610;86611;86612;86613	86604			11	
EALNSCNKR	1	Unmodified	1090.5189	0.5189411	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.18		4	5					7		2	5	5	4	5.3131	1.0745	2;3	3.4846E-08	2682	160511_QHF_FH_JSI10i_3	151.44	106.99			0.95309	0.96801	14.818	16	3	Median	1.4078	1.1935	8.9776	2	0	Median	0.79271	0.90816	13.69	5	2	Median	0.91728	0.89917	8.3657	5	1	Median	1.0307	1.101	5.6972	4	0	Median	2440000000	1209900000	1230000000	207750000	80663000	127090000	684460000	383860000	300600000	1028100000	528270000	499880000	519590000	217130000	302460000	10374	1154	9827	64249;64250;64251;64252;64253;64254;64255;64256;64257;64258;64259;64260;64261;64262;64263;64264	86614;86615;86616;86617;86618;86619;86620;86621;86622;86623;86624;86625;86626;86627;86628;86629;86630	86617			17	
EALNSCNKR	1	Acetyl (K)	1132.5295	0.52950579	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		14.926	7.3052	2	0.051726	6313	160513_QHF_FH_JSI11Kac_4	54.982	27.728			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3234900	3234900	0	0	0	0	0	0	0	3234900	3234900	0	0	0	0	10375	1154	9827	64265	86631	86631			1	
EALNSLSQLSYSTSSSK	1	Unmodified	1800.8741	0.87413737	5183	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	57.455	56.557	2	5.3589E-06	50204	160511_QHF_FH_JSI9i_1	112.15	96.017			1.3662	1.236	9.1019	2	1	Median	1.4477	1.1589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2892	1.3181	NaN	1	0	Median	37384000	18492000	18892000	11283000	7827900	3455000	0	0	0	0	0	0	26101000	10664000	15437000	10376	5183	9828	64266;64267	86632;86633	86633			2	
EALNVINTHTK	1	Unmodified	1238.6619	0.66190017	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.23		5	2					1		2	2	1	3	29.211	27.17	2;3	1.7448E-05	23660	160511_QHF_FH_JSI10i_2	104.43	74.18			0.93545	1.0281	34.775	7	4	Median	0.74001	0.63238	30.068	2	1	Median	0.73896	0.90142	18.593	2	0	Median	1.1548	1.1547	NaN	1	1	Median	1.241	1.3124	13.321	2	2	Median	729670000	400240000	329430000	23174000	11872000	11302000	239050000	159170000	79880000	241690000	126660000	115030000	225750000	102530000	123220000	10377	602	9829	64268;64269;64270;64271;64272;64273;64274;64275	86634;86635;86636;86637;86638;86639;86640;86641	86639			8	
EALPDGVNISK	1	Unmodified	1141.5979	0.59790293	4952	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	49.59	45.188	2	0.00010845	40390	160511_QHF_FH_JSI10i_1	85.807	76.391			0.96026	0.94824	15.324	7	0	Median	0.95293	0.77685	NaN	1	0	Median	0.82808	0.96954	3.6057	2	0	Median	0.96147	0.94378	0.66731	2	0	Median	1.0962	1.1818	11.248	2	0	Median	1275400000	707180000	568180000	274390000	149310000	125080000	354340000	199340000	155000000	350130000	202900000	147230000	296490000	155620000	140870000	10378	4952	9830	64276;64277;64278;64279;64280;64281;64282	86642;86643;86644;86645;86646;86647;86648;86649;86650;86651;86652	86648			11	
EALPGSGQAR	0	Unmodified	984.49886	0.49885759	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	14.632	12.881	2	0.0015325	11005	160511_QHF_FH_JSI12i_1	65.305	29.425			0.98897	1.007	6.9175	5	0	Median	1.1701	0.97482	NaN	1	0	Median	0.79769	0.95298	NaN	1	0	Median	1.165	1.1368	NaN	1	0	Median	0.951	1.0257	2.5893	2	0	Median	812870000	398160000	414700000	204400000	103850000	100540000	222650000	103210000	119440000	170760000	77007000	93757000	215060000	114090000	100970000	10379	4126	9831	64283;64284;64285;64286;64287	86653;86654;86655;86656;86657;86658;86659;86660	86655			8	
EALPTWDK	1	Unmodified	958.476	0.47599688	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	42.137	41.49	2	0.0010939	37669	160511_QHF_FH_JSI12i_1	94.114	82.21			0.94781	1.0175	20.505	4	1	Median	1.6942	1.3931	NaN	1	1	Median	0.81748	0.97464	NaN	1	0	Median	0.8858	0.85837	NaN	1	0	Median	1.0142	1.0623	NaN	1	0	Median	875180000	461850000	413340000	122220000	52477000	69741000	226110000	125970000	100140000	284850000	160800000	124040000	242010000	122600000	119410000	10380	4411	9832	64288;64289;64290;64291;64292	86661;86662;86663;86664;86665;86666;86667;86668	86664			8	
EALQDVEDENQ	0	Unmodified	1288.5419	0.54190419	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	5.16	4			3	3					1	3	3	3	35.781	30.64	2	5.3172E-36	12644	160513_QHF_FH_JSI12Kacf_1	200.05	200.05			1.0148	1.1149	15.532	9	0	Median	1.4012	1.1769	NaN	1	0	Median	1.0148	1.216	17.662	3	0	Median	1.0931	1.0733	5.3773	2	0	Median	0.93128	0.99788	4.305	3	0	Median	7271100000	3357600000	3913500000	1787200000	736930000	1050200000	2110400000	956800000	1153600000	1736500000	835660000	900880000	1637000000	828210000	808840000	10381	1990	9833	64293;64294;64295;64296;64297;64298;64299;64300;64301;64302	86669;86670;86671;86672;86673;86674;86675;86676;86677;86678;86679;86680;86681;86682;86683;86684;86685;86686;86687;86688	86681			20	
EALQINQDHPDAWSLIGNLHLAK	1	Unmodified	2582.3241	0.32413469	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	95.667	95.671	4	2.5446E-09	82455	160511_QHF_FH_JSI12i_3	86.625	79.672			0.98703	1.0735	11.128	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98703	0.93224	10.455	2	0	Median	0.93853	0.97339	15.606	2	0	Median	228220000	109160000	119060000	0	0	0	0	0	0	82977000	36684000	46293000	145250000	72476000	72771000	10382	3115	9834	64303;64304;64305;64306	86689;86690;86691;86692;86693;86694;86695	86694			7	
EALQLMATYLPK	1	Unmodified	1376.7374	0.7373733	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	6.21	4	7						5		4	5	4	3	84.249	80.987	2;3	1.2546E-07	76146	160511_QHF_FH_JSI11i_1	135.99	111.64			1.0272	1.1027	38.746	15	11	Median	1.3821	1.1501	22.788	4	4	Median	0.78109	0.91191	20.974	4	2	Median	1.0789	1.0548	17.855	4	3	Median	1.3245	1.4932	67.163	3	2	Median	1055800000	507300000	548470000	290300000	123610000	166690000	339120000	180030000	159090000	223570000	112950000	110610000	202780000	90701000	112080000	10383	4272	9835	64307;64308;64309;64310;64311;64312;64313;64314;64315;64316;64317;64318;64319;64320;64321;64322	86696;86697;86698;86699;86700;86701;86702;86703;86704;86705;86706;86707;86708;86709;86710;86711;86712;86713;86714;86715	86696			20	
EALQLMATYLPK	1	Oxidation (M)	1392.7323	0.73228792	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching		15	0								3		1	1	1		74.535	63.948	2	0.00054992	31952	160513_QHF_FH_JSI10Kac_5	83	71.849			0.78502	0.8023	3.29	3	0	Median	0.94183	0.8023	NaN	1	0	Median	0.71145	0.83104	NaN	1	0	Median	0.78502	0.77816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6977500	3477700	3499800	1403100	722940	680210	1614600	773920	840650	3959800	1980800	1979000	0	0	0	10384	4272	9835	64323;64324;64325	86716;86717;86718	86717		2424	3	
EALQYFYFLR	0	Unmodified	1348.6816	0.68157298	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	1	1	1	2	90.548	84.873	2	1.719E-24	43520	160513_QHF_FH_JSI9Kac_6	179.37	91.896			0.82889	0.87859	30.395	5	1	Median	1.0756	0.90161	NaN	1	0	Median	0.54319	0.67462	NaN	1	1	Median	0.9512	0.91427	NaN	1	0	Median	0.58472	0.62865	47.339	2	0	Median	715180000	371520000	343650000	203330000	101220000	102110000	24258000	13332000	10925000	283120000	144560000	138560000	204460000	112410000	92053000	10385	3503	9836	64326;64327;64328;64329;64330	86719;86720;86721;86722;86723	86723			5	
EALQYFYFLRDEK	1	Unmodified	1720.8461	0.84607213	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	1	4	1	81.661	76.163	2;3	3.9743E-20	39610	160513_QHF_FH_JSI9Kac_6	135.24	113.41			0.92189	0.96622	19.678	6	1	Median	1.2653	1.1003	NaN	1	0	Median	0.85144	1.0048	NaN	1	0	Median	0.99817	0.9291	25.425	3	1	Median	0.8162	0.85846	NaN	1	0	Median	944200000	472490000	471710000	255470000	97670000	157800000	349320000	200180000	149150000	270110000	134230000	135880000	69297000	40414000	28883000	10386	3503	9837	64331;64332;64333;64334;64335;64336;64337	86724;86725;86726;86727;86728;86729;86730;86731;86732;86733;86734	86729			11	
EALTYDGALLGDR	0	Unmodified	1392.6885	0.68850885	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.89	4	1				2	1			1	3	1	3	64.982	60.906	2	3.1079E-12	32640	160513_QHF_FH_JSI12Kac_4	126.19	84.746			1.086	1.1307	20.905	8	2	Median	1.5071	1.2163	NaN	1	0	Median	0.77164	0.91459	31.732	3	2	Median	1.206	1.1825	NaN	1	0	Median	0.98592	1.0812	16.577	3	0	Median	6449600000	2813400000	3636200000	1314100000	522150000	791970000	1770400000	862100000	908270000	1847400000	774650000	1072800000	1517600000	654480000	863160000	10387	2619	9838	64338;64339;64340;64341;64342;64343;64344;64345	86735;86736;86737;86738;86739;86740;86741;86742;86743;86744;86745	86743			11	
EALVDTLTGILSPVQEVR	0	Unmodified	1939.0626	0.062606842	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	4	2	3	101.69	101.6	2;3	1.8668E-23	89477	160511_QHF_FH_JSI9i_2	218.31	194.93			0.88746	1.0409	19.99	11	2	Median	1.2331	1.0314	5.2523	2	1	Median	0.87383	1.0538	17.285	4	0	Median	0.91421	0.9111	28.003	2	1	Median	0.8492	0.95743	29.309	3	0	Median	960460000	483490000	476970000	130650000	55772000	74878000	380020000	194700000	185320000	209420000	107670000	101760000	240370000	125350000	115020000	10388	4193	9839	64346;64347;64348;64349;64350;64351;64352;64353;64354;64355;64356	86746;86747;86748;86749;86750;86751;86752;86753;86754	86751			8	
EALVPFK	1	Unmodified	802.45889	0.45889025	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.437	47.026	2	0.057163	42454	160511_QHF_FH_JSI11i_1	46.37	24.824			2.1964	2.1177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1964	2.1177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19665000	6400500	13265000	0	0	0	0	0	0	19665000	6400500	13265000	0	0	0	10389	3262	9840	64357	86755	86755			1	
EAMCPGVSGEDSSLLLATQVEGQATNLQR	0	Unmodified	3060.4492	0.44921314	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			89.148	89.046	3	7.72E-05	80844	160511_QHF_FH_JSI10i_1	48.634	42.731			1.8107	2.0874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8107	2.0874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17287000	5046400	12240000	0	0	0	17287000	5046400	12240000	0	0	0	0	0	0	10390	1065	9841	64358	86756	86756			1	
EAMDPIAELLSQLSGVR	0	Unmodified	1827.94	0.94004887	5182	Q9P0J7	KCMF1	E3 ubiquitin-protein ligase KCMF1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	103.27	103.11	2	2.391E-06	89051	160511_QHF_FH_JSI12i_2	145.71	132.31			0.768	0.82608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.768	0.82608	NaN	1	0	Median	17549000	9901600	7647700	0	0	0	0	0	0	0	0	0	17549000	9901600	7647700	10391	5182	9842	64359	86757	86757			1	
EAMEADLK	1	Unmodified	905.41643	0.41643309	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	21.341	20.689	2	0.0027508	17624	160511_QHF_FH_JSI9i_1	77.732	14.167			1.1377	1.0438	39.082	3	1	Plateau	1.3571	1.105	NaN	1	0	Median	1.7399	2.0702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95371	1.0106	NaN	1	0	Median	755510000	366420000	389100000	282770000	145390000	137390000	180890000	65394000	115500000	0	0	0	291850000	155640000	136210000	10392	5436	9843	64360;64361;64362	86758;86759;86760	86760			3	
EAMEDGEIDGNK	1	Oxidation (M)	1322.5296	0.52962495	1154	P19338	NCL	Nucleolin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.63	5.35	13				3	3				4	5	4	6	16.707	14.037	2	1.7181E-31	8485	160511_QHF_FH_JSI11i_1	193.52	188.56			0.96385	1.0139	92.222	19	3	Median	2.3801	1.9471	126.61	4	2	Median	0.89876	1.0738	90.643	5	1	Median	0.90839	0.88912	36.506	4	0	Median	0.94012	1.0124	88.38	6	0	Median	5768800000	2865900000	2902900000	1348200000	540120000	808050000	1403200000	780110000	623060000	986500000	500840000	485660000	2031000000	1044800000	986140000	10393	1154	9844	64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378;64379;64380;64381	86761;86762;86763;86764;86765;86766;86767;86768;86769;86770;86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782;86783	86762		787	22	
EAMEDGEIDGNK	1	Unmodified	1306.5347	0.53471033	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.05	5	2		1	3					1	4	4	2	23.291	19.723	2	6.6631E-42	17309	160511_QHF_FH_JSI10i_1	206.73	189.49			0.81436	0.87222	24.059	9	1	Median	1.1524	0.96456	NaN	1	0	Median	0.55594	0.66717	42.697	3	0	Plateau	1.0122	0.98494	15.025	3	1	Plateau	0.80798	0.85419	9.9954	2	0	Median	11037000000	5205200000	5831900000	2362500000	941950000	1420500000	2205600000	1222400000	983210000	3023400000	1422400000	1601000000	3445800000	1618500000	1827300000	10394	1154	9844	64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392	86784;86785;86786;86787;86788;86789;86790;86791;86792;86793;86794;86795;86796;86797;86798;86799;86800;86801;86802;86803;86804	86794			21	
EAMEHPYFYPVVK	1	Unmodified	1608.7647	0.76465068	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	59.712	58.873	3	0.00041509	52033	160511_QHF_FH_JSI10i_2	60.628	42.526			0.76453	0.7735	51.009	5	2	Median	1.0651	0.90139	NaN	1	1	Median	0.51357	0.62864	NaN	1	0	Median	0.45204	0.45706	74.405	2	1	Median	0.83551	0.93418	NaN	1	0	Median	723320000	426280000	297040000	71470000	38634000	32836000	128940000	71928000	57014000	403880000	247150000	156730000	119030000	68568000	50464000	10395	1165	9845	64393;64394;64395;64396;64397	86805;86806;86807;86808;86809;86810;86811;86812	86811			8	
EAMEHPYFYTVVK	1	Unmodified	1612.7596	0.7595653	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	4.02		10							1	4	3	2	2	57.57	55.902	2;3	4.88E-05	48328	160511_QHF_FH_JSI11i_2	112.13	90.08			0.94344	0.9897	12.186	11	5	Median	1.3326	1.1153	16.424	4	3	Linear	0.85991	1.0518	4.6736	3	2	Median	0.97052	0.97862	1.592	2	0	Median	0.94898	1.0405	1.4759	2	0	Median	1276900000	670590000	606330000	173330000	90248000	83084000	501530000	281170000	220360000	392280000	190560000	201720000	209780000	108610000	101170000	10396	2076	9846	64398;64399;64400;64401;64402;64403;64404;64405;64406;64407;64408	86813;86814;86815;86816;86817;86818;86819;86820;86821;86822;86823;86824;86825;86826;86827;86828	86822			16	
EAMEHPYFYTVVKDQAR	1	Acetyl (K)	2124.9939	0.99387535	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	1	0	0	1			By MS/MS		16	0									1			1		74.09	64.734	3	3.2043E-05	35126	160513_QHF_FH_JSI11Kac_6	87.85	79.031			0.50757	0.49913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50757	0.49913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24225000	17754000	6470700	0	0	0	0	0	0	24225000	17754000	6470700	0	0	0	10397	2076	9847	64409	86829	86829	2163		1	
EAMFSAGMQLPTLDEINKK	2	Unmodified	2122.0439	0.04386201	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	87.362	86.656	3	3.1368E-06	77028	160511_QHF_FH_JSI10i_2	93.152	72.502			0.84836	0.91337	9.7517	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.85762	1.062	NaN	1	1	Median	0.85169	0.88484	NaN	1	0	Median	0.84713	0.91337	NaN	1	0	Median	71144000	37281000	33863000	0	0	0	21622000	11009000	10613000	22675000	13575000	9099500	26847000	12697000	14150000	10398	3839	9848	64410;64411;64412	86830;86831;86832;86833	86833			4	
EAMGIYISTLK	1	Unmodified	1224.6424	0.64241028	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.44	1	2	2					5	3	4	3	3	3	72.91	65.632	2	9.8515E-06	58895	160511_QHF_FH_JSI10i_2	108.43	95.454			1.0168	0.98461	11.367	10	3	Median	1.1864	0.98461	10.799	4	2	Median	0.75702	0.93246	15.483	3	0	Median	0.93373	0.92648	NaN	1	0	Median	1.0168	1.1176	0.65844	2	1	Median	461120000	238580000	222540000	156670000	66166000	90501000	263390000	153620000	109770000	25448000	11011000	14438000	15612000	7780300	7832000	10399	694	9849	64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423;64424;64425	86834;86835;86836;86837;86838;86839;86840;86841;86842;86843;86844;86845;86846;86847;86848;86849	86844			15	
EAMGIYISTLK	1	Oxidation (M)	1240.6373	0.6373249	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.85						1	4	5	2	2	3	2	5	62.7	52.203	2	1.7907E-09	28439	160513_QHF_FH_JSI11Kac_5	125.75	109.54			0.93138	0.93937	31.944	11	2	Median	1.1046	0.94376	0.65902	2	1	Median	0.78395	0.93924	8.0671	3	0	Plateau	0.93924	0.9241	2.2948	2	0	Median	1.0968	1.2074	54.054	4	1	Median	184870000	84451000	100410000	32344000	14803000	17541000	63183000	29373000	33810000	37725000	17363000	20362000	51614000	22912000	28702000	10400	694	9849	64426;64427;64428;64429;64430;64431;64432;64433;64434;64435;64436;64437	86850;86851;86852;86853;86854;86855;86856;86857;86858;86859;86860;86861;86862;86863;86864;86865	86859		244	15	
EAMHGVFLYHAIK	1	Unmodified	1514.7704	0.77040476	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	1	3	57.366	49.711	3;4	6.0034E-06	27209	160513_QHF_FH_JSI10Kac_6	95.417	86.818			1.3877	1.252	20.734	6	0	Median	1.4846	1.2752	NaN	1	0	Median	1.3	1.5462	36.319	2	0	Median	1.3057	1.2293	NaN	1	0	Median	1.2395	1.3028	17.909	2	0	Median	190940000	95228000	95711000	24029000	10118000	13911000	75726000	39757000	35969000	28855000	14991000	13864000	62330000	30363000	31967000	10401	4303	9850	64438;64439;64440;64441;64442;64443;64444	86866;86867;86868;86869;86870;86871;86872;86873;86874	86874			8	
EAMHGVFLYHAIK	1	Oxidation (M)	1530.7653	0.76531938	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				50.15	40.918	3	0.031714	21780	160513_QHF_FH_JSI9Kac_6	30.858	18.882			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10402	4303	9850	64445	86875	86875			1	
EAMLKHR	1	Acetyl (K)	925.48037	0.48037075	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		16.046	6.7983	3	0.0085407	5989	160513_QHF_FH_JSI11Kac_6	60.682	38.19			0.56523	0.55375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56523	0.55375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15169000	9711400	5457900	0	0	0	0	0	0	15169000	9711400	5457900	0	0	0	10403	361	9851	64446	86876	86876	182		1	
EAMMGLAQLYK	1	Unmodified	1253.6148	0.61481532	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.87	69.982	2	4.0727E-06	61232	160511_QHF_FH_JSI11i_2	110.87	0			0.84782	0.86841	8.7488	4	0	Median	0.95455	0.82454	NaN	1	0	Median	0.75118	0.91462	NaN	1	0	Median	0.81208	0.81169	NaN	1	0	Median	0.88514	0.97595	NaN	1	0	Median	223180000	113000000	110180000	45257000	20859000	24397000	51198000	26432000	24766000	67360000	36644000	30715000	59364000	29062000	30302000	10404	2789	9852	64447;64448;64449;64450	86877;86878;86879;86880	86879			3	
EAMNDPLLER	0	Unmodified	1186.5652	0.56522259	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.001	44.33	2	8.7574E-08	39945	160511_QHF_FH_JSI10i_1	122.96	101.11			1.0848	1.0912	6.24	4	0	Median	1.2775	1.0476	NaN	1	0	Median	0.99742	1.1799	NaN	1	0	Median	1.1799	1.1366	NaN	1	0	Median	0.99607	1.0385	NaN	1	0	Median	2194800000	1075700000	1119100000	455180000	185440000	269740000	554560000	293910000	260650000	612640000	294630000	318010000	572460000	301760000	270690000	10405	300	9853	64451;64452;64453;64454	86881;86882;86883;86884;86885;86886;86887	86885			7	
EAMNHPGHLK	1	Unmodified	1132.5448	0.54476192	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	7.6343	7.5782	2;3	1.1434E-09	5225	160511_QHF_FH_JSI11i_3	135.79	100.98			0.83781	0.79947	6.8698	5	1	Median	0.92081	0.78331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89098	0.84773	10.813	2	0	Median	0.7921	0.8309	5.4531	2	0	Median	525260000	268300000	256960000	41010000	21878000	19132000	0	0	0	228240000	103640000	124590000	256010000	142780000	113240000	10406	763	9854	64455;64456;64457;64458;64459	86888;86889;86890;86891;86892;86893;86894;86895;86896;86897	86890			10	
EAMNHPGHLK	1	Oxidation (M)	1148.5397	0.53967654	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			3									1	2	4.8738	4.9355	2;3	0.00067972	2460	160511_QHF_FH_JSI12i_3	74.173	45.023			1.1476	1.165	53.428	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62095	0.58644	NaN	1	0	Median	1.3887	1.3989	25.883	2	0	Median	324730000	152010000	172720000	0	0	0	0	0	0	60222000	36620000	23602000	264510000	115390000	149120000	10407	763	9854	64460;64461;64462	86898;86899	86898		270	2	
EAMSAYNSHEEGR	0	Unmodified	1479.6049	0.60485558	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.982	10.781	2	9.8251E-07	8265	160511_QHF_FH_JSI11i_2	127.87	120.3			1.7333	1.7905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7333	1.7905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22919000	8358600	14561000	0	0	0	0	0	0	22919000	8358600	14561000	0	0	0	10408	1435	9855	64463	86900	86900			1	
EAMTDIITLFGLSSNSKK	2	Unmodified	1954.0081	0.0081284304	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	3	0			3								1	1	1	101.07	101.02	3	0.00068895	87885	160511_QHF_FH_JSI12i_3	51.524	34.446			1.1218	1.061	10.525	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.78853	0.88394	NaN	1	0	Median	1.1218	1.061	NaN	1	0	Median	1.0536	1.0604	NaN	1	0	Median	580130000	277610000	302530000	0	0	0	132960000	58566000	74399000	256020000	121490000	134530000	191150000	97554000	93599000	10409	1704	9856	64464;64465;64466	86901	86901			1	
EAMVAFFNSAVASAEEEQAR	0	Unmodified	2155.9844	0.98443288	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.33	94.996	2	0.00092574	83417	160511_QHF_FH_JSI11i_2	77.912	72.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5904000	0	5904000	0	0	0	0	0	0	5904000	0	5904000	0	0	0	10410	2270	9857	64467	86902	86902			1	
EAMVESIEYR	0	Unmodified	1225.5649	0.56488824	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	43.502	42.844	2	3.2213E-08	38135	160511_QHF_FH_JSI9i_1	125.82	114.05			1.1392	1.0288	17.361	4	3	Median	1.1539	0.9599	NaN	1	0	Median	1.1954	1.394	NaN	1	1	Median	1.1247	1.0919	NaN	1	1	Median	0.93119	0.96939	NaN	1	1	Median	570680000	262750000	307930000	98032000	34096000	63936000	155710000	70809000	84897000	167880000	87791000	80094000	149060000	70052000	79003000	10411	1604	9858	64468;64469;64470;64471;64472;64473	86903;86904;86905;86906;86907;86908;86909	86909			7	
EAMVESIEYRR	0	Unmodified	1381.666	0.66599927	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	3	4	2	35.264	34.529	2;3	1.4354E-05	30087	160511_QHF_FH_JSI11i_3	112.75	87.973			1.002	1.0932	20.44	7	1	Median	1.2749	1.1225	NaN	1	0	Median	0.93153	1.1597	8.3516	2	0	Median	1.0454	1.0078	20.95	3	1	Plateau	1.212	1.3042	NaN	1	0	Median	627210000	293500000	333710000	127410000	58116000	69293000	227560000	104170000	123390000	229580000	108750000	120830000	42661000	22461000	20200000	10412	1604	9859	64474;64475;64476;64477;64478;64479;64480;64481;64482;64483	86910;86911;86912;86913;86914;86915;86916;86917;86918	86910			8	
EAMVMANNVYK	1	Unmodified	1268.5893	0.58932885	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.787	40.464	2	9.9747E-06	36538	160511_QHF_FH_JSI11i_1	110.55	98.959			0.3541	0.3431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3541	0.3431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166320000	136860000	29460000	0	0	0	0	0	0	166320000	136860000	29460000	0	0	0	10413	5351	9860	64484	86919	86919			1	
EANANGSSPEPVK	1	Unmodified	1298.6103	0.61025853	2812	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	10.624	10.315	2	3.8454E-10	8079	160511_QHF_FH_JSI10i_1	143.79	90.622			0.57668	0.63754	27.78	2	1	Median	NaN	NaN	NaN	0	0	Median	0.65869	0.77592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50488	0.52384	NaN	1	1	Median	71488000	42669000	28819000	0	0	0	36264000	19556000	16708000	0	0	0	35224000	23113000	12111000	10414	2812	9861	64485;64486	86920;86921;86922	86921			3	
EANAYDFIMK	1	Unmodified	1200.5485	0.5485099	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	63.374	62.662	2	0.0079407	55687	160511_QHF_FH_JSI9i_1	60.518	38.432			0.63992	0.64835	16.181	3	3	Median	0.63992	0.54534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79018	0.75352	NaN	1	1	Median	0.60665	0.64835	NaN	1	1	Median	119560000	78296000	41264000	28056000	17412000	10644000	0	0	0	47090000	32559000	14531000	44415000	28325000	16089000	10415	894	9862	64487;64488;64489	86923;86924;86925	86925			3	
EANDALNAYVCK	1	Unmodified	1366.6187	0.61871473	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.449	41.822	2	0.013467	38007	160511_QHF_FH_JSI12i_1	45.307	27.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10416	3028	9863	64490	86926	86926			1	
EANDSDVQPSGAQR	0	Unmodified	1472.6492	0.64916323	718	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	9.4891	9.3619	2	3.4102E-17	6852	160511_QHF_FH_JSI9i_1	134.99	105.25			1.2459	1.1875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2459	1.1875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32756000	14598000	18158000	0	0	0	0	0	0	32756000	14598000	18158000	0	0	0	10417	718	9864	64491;64492;64493;64494	86927;86928;86929;86930	86930			4	
EANEILQR	0	Unmodified	971.50361	0.50360861	1015;1182	P20839;P12268	IMPDH1;IMPDH2	Inosine-5'-monophosphate dehydrogenase 1;Inosine-5'-monophosphate dehydrogenase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	21.689	19.879	2	6.0707E-05	17186	160511_QHF_FH_JSI10i_1	134.48	61.689			1.0745	1.0802	11.821	6	1	Median	1.2965	1.0511	NaN	1	0	Median	0.86926	1.0414	20.837	2	1	Median	1.1909	1.1599	11.508	2	0	Median	1.0455	1.0914	NaN	1	0	Median	2007500000	1049600000	957940000	395600000	196730000	198870000	480830000	266000000	214820000	553810000	260290000	293520000	577290000	326560000	250730000	10418	1182;1015	9865	64495;64496;64497;64498;64499;64500	86931;86932;86933;86934;86935;86936;86937;86938;86939;86940;86941	86936			11	
EANELQQWINEK	1	Unmodified	1500.7209	0.72087161	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	2	2	66.016	65.411	2	9.0524E-10	56703	160511_QHF_FH_JSI11i_2	121.02	86.134			0.70038	0.81594	34.147	5	4	Median	0.55198	0.44082	NaN	1	1	Median	0.70038	0.81594	NaN	1	0	Median	0.90777	0.84929	NaN	1	1	Median	0.80786	0.82923	37.977	2	2	Median	267150000	156840000	110310000	40060000	24408000	15652000	48180000	31138000	17042000	70278000	36689000	33590000	108630000	64604000	44025000	10419	2470	9866	64501;64502;64503;64504;64505;64506	86942;86943;86944;86945;86946;86947	86947			6	
EANFTVSSMHGDMPQK	1	Unmodified	1777.7764	0.77635436	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.61	3.08	5	9	3					1		1	5	6	6	43.611	42.178	2;3	1.0786E-16	36139	160511_QHF_FH_JSI11i_2	121.28	111.85			0.9006	0.97678	39.197	14	7	Median	1.5449	1.3262	NaN	1	0	Median	0.87243	1.0581	30.947	4	2	Median	0.91663	0.91269	26.84	4	2	Median	0.6516	0.74136	56.961	5	3	Median	2824000000	1398900000	1425100000	59426000	22663000	36763000	1183900000	583210000	600660000	334250000	159480000	174770000	1246400000	633540000	612900000	10420	1481	9867	64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523;64524	86948;86949;86950;86951;86952;86953;86954;86955;86956;86957;86958;86959;86960;86961;86962;86963;86964;86965;86966;86967;86968;86969	86960			22	
EANFTVSSMHGDMPQK	1	Oxidation (M)	1793.7713	0.77126898	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1		1	1	1	1	31.194	30.316	3	0.0026292	25436	160511_QHF_FH_JSI12i_2	44.196	42.071			1.0737	1.1671	62.673	3	2	Plateau	NaN	NaN	NaN	0	0	Median	2.876	3.5158	NaN	1	1	Median	1.2247	1.209	NaN	1	1	Median	1.0737	1.1671	NaN	1	0	Median	142590000	66160000	76427000	0	0	0	39004000	13747000	25257000	64140000	32338000	31802000	39443000	20075000	19368000	10421	1481	9867	64525;64526;64527;64528	86970;86971;86972;86973;86974	86970		1157	5	
EANHDGDFGITLAELR	0	Unmodified	1756.838	0.83802663	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.591	70.298	3	0.0077919	60702	160511_QHF_FH_JSI12i_2	38.777	36.019			0.82238	0.90693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82238	0.90693	NaN	1	1	Median	14886000	9686600	5199000	0	0	0	0	0	0	0	0	0	14886000	9686600	5199000	10422	1168	9868	64529	86975	86975			1	
EANHNVSAPYGR	0	Unmodified	1313.6113	0.61126158	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3								2	3	3	11.582	11.348	2;3	9.4056E-05	8941	160511_QHF_FH_JSI11i_3	90.913	74.71			0.88554	0.90824	6.0974	6	0	Median	NaN	NaN	NaN	0	0	Median	0.70411	0.86879	NaN	1	0	Median	1.0459	0.97075	7.3024	3	0	Plateau	0.86342	0.90723	6.4361	2	0	Median	256930000	130020000	126910000	0	0	0	46542000	27260000	19282000	141590000	64614000	76977000	68792000	38143000	30649000	10423	3229;4066	9869	64530;64531;64532;64533;64534;64535;64536;64537	86976;86977;86978;86979;86980;86981;86982;86983;86984;86985;86986	86978			11	
EANIHAFIESLPNK	1	Unmodified	1581.8151	0.81510635	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		67.129	67.129	2	0.0097318	59778	160511_QHF_FH_JSI11i_3	46.358	31.482			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10424	894	9870	64538	86987	86987			1	
EANIQAVDSEVGLTK	1	Unmodified	1572.7995	0.79951586	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	56.249	55.57	2;3	9.4916E-30	50095	160511_QHF_FH_JSI10i_1	188.48	165.56			0.95984	1.0024	21.238	11	6	Median	1.2491	1.0677	33.657	3	2	Median	0.78229	0.90598	12.154	2	0	Median	1.2518	1.2202	21.868	3	2	Plateau	0.95984	1.0024	17.532	3	2	Median	1017600000	520800000	496840000	252940000	120880000	132060000	143320000	95492000	47828000	311980000	143180000	168800000	309400000	161250000	148150000	10425	4673	9871	64539;64540;64541;64542;64543;64544;64545;64546;64547;64548;64549	86988;86989;86990;86991;86992;86993;86994;86995;86996;86997	86994			8	
EANLAASFGK	1	Unmodified	1006.5084	0.50835964	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	6	4					2			2	3	4	3	41.636	37.825	2	4.8833E-05	33846	160511_QHF_FH_JSI10i_1	100.48	47.31			1.1174	1.2171	59.269	6	6	Median	NaN	NaN	NaN	0	0	Median	1.1454	1.3619	69.545	2	2	Median	2.1313	2.0618	71.728	3	3	Plateau	0.70726	0.76502	NaN	1	1	Median	1379500000	662300000	717180000	0	0	0	623400000	290240000	333160000	749790000	368110000	381670000	6295900	3947500	2348300	10426	935	9872	64550;64551;64552;64553;64554;64555;64556;64557;64558;64559;64560;64561	86998;86999;87000;87001;87002;87003;87004;87005;87006;87007;87008;87009	87003			12	
EANLLNAVIVQR	0	Unmodified	1338.7619	0.76194857	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.79		8						3		3	3	3	2	73.931	71.641	2;3	7.6512E-05	63224	160511_QHF_FH_JSI11i_2	112.13	103.91			0.96111	0.96466	33.24	7	2	Median	1.1336	0.96128	0.49569	2	1	Median	0.58471	0.71275	69.072	2	1	Median	1.0399	1.0874	NaN	1	0	Median	0.8887	1.0038	9.7316	2	0	Median	274780000	135590000	139190000	55535000	22985000	32550000	59728000	31866000	27862000	78273000	38302000	39971000	81248000	42440000	38808000	10427	5453	9873	64562;64563;64564;64565;64566;64567;64568;64569;64570;64571;64572	87010;87011;87012;87013;87014;87015;87016;87017;87018;87019;87020	87015			10	
EANLQQNEEK	1	Unmodified	1201.5575	0.55749468	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	4									2	1		1	9.2093	8.6911	2	6.7424E-07	6616	160511_QHF_FH_JSI12i_1	138.08	115.93			0.83626	0.92645	41.598	4	2	Median	1.0174	0.8307	66.181	2	2	Median	0.65447	0.76917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0685	1.1159	NaN	1	0	Median	267490000	123220000	144270000	122840000	49673000	73166000	68411000	36090000	32321000	0	0	0	76244000	37459000	38785000	10428	5118	9874	64573;64574;64575;64576	87021;87022;87023	87021			2	
EANMPLPGYK	1	Unmodified	1118.543	0.54303059	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	6.08	6	1				1	3			3	3	2	3	47.736	43.447	2	7.2871E-08	39788	160511_QHF_FH_JSI12i_1	123.72	112.5			0.9453	0.96525	40.551	11	3	Median	1.128	0.93055	85.052	3	2	Median	0.81872	0.96715	25.662	3	1	Median	1.015	0.98235	8.2398	2	0	Median	0.88823	0.96525	15.901	3	0	Median	4766900000	2303500000	2463400000	1683800000	758240000	925600000	978550000	491640000	486910000	1037000000	498180000	538830000	1067500000	555390000	512080000	10429	1039	9875	64577;64578;64579;64580;64581;64582;64583;64584;64585;64586;64587	87024;87025;87026;87027;87028;87029;87030;87031;87032;87033;87034;87035;87036;87037;87038;87039;87040;87041;87042;87043;87044	87031			21	
EANMPLPGYK	1	Oxidation (M)	1134.5379	0.53794521	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	5.33	6.13	2						1					1	2	28.743	25.396	2	0.033776	15222	160513_QHF_FH_JSI12Kac_4	40.002	31.781			1.1472	1.1582	7.8196	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1934	1.132	NaN	1	1	Median	1.035	1.0938	10.698	2	1	Median	169780000	80947000	88834000	0	0	0	0	0	0	65695000	23664000	42032000	104090000	57283000	46802000	10430	1039	9875	64588;64589;64590	87045;87046;87047	87047			3	
EANMPLPGYKVR	1	Acetyl (K)	1415.7231	0.72312022	1039	P13797	PLS3	Plastin-3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		66.545	55.502	2	0.040478	30901	160513_QHF_FH_JSI11Kac_4	44.309	34.356			0.50282	0.50393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50282	0.50393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3789000	2096600	1692400	0	0	0	0	0	0	3789000	2096600	1692400	0	0	0	10431	1039	9876	64591	87048	87048			1	
EANNFLWPFK	1	Unmodified	1264.6241	0.6240581	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.7	3	5	4					4	5	4	5	5	7	88.503	84.187	2	2.1932E-34	79564	160511_QHF_FH_JSI10i_2	209.19	202.53			0.90713	0.91718	14.178	21	5	Median	1.1031	0.91101	27.733	4	1	Median	0.80095	0.94973	9.3482	5	0	Median	0.9283	0.91718	12.119	5	0	Median	0.9093	0.96463	10.45	7	4	Median	8279400000	4056200000	4223100000	1263300000	551060000	712290000	1861100000	1017200000	843930000	2379600000	1105300000	1274400000	2775300000	1382800000	1392500000	10432	1138	9877	64592;64593;64594;64595;64596;64597;64598;64599;64600;64601;64602;64603;64604;64605;64606;64607;64608;64609;64610;64611;64612	87049;87050;87051;87052;87053;87054;87055;87056;87057;87058;87059;87060;87061;87062;87063;87064;87065;87066;87067;87068;87069;87070;87071;87072;87073;87074;87075;87076;87077;87078;87079;87080;87081;87082;87083;87084;87085;87086;87087;87088;87089;87090;87091;87092;87093;87094;87095;87096;87097;87098;87099;87100;87101;87102	87095			54	
EANNGSSPAGSLADAMSQK	1	Unmodified	1833.8163	0.81630491	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.816	47.153	2	1.9897E-11	42831	160511_QHF_FH_JSI12i_1	113.59	99.233			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10433	1750	9878	64613	87103	87103			1	
EANQAINPK	1	Unmodified	983.50361	0.50360861	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	5.47	4		2		3	3				2	4	3	3	10.875	6.72	2	2.2223E-05	6727	160511_QHF_FH_JSI10i_1	117.89	87.153			1.0103	1.0218	8.1246	11	0	Median	1.2433	1.0135	1.1528	2	0	Median	0.79008	0.91557	11.022	3	0	Plateau	1.0107	1.174	10.013	3	0	Plateau	0.98135	1.0432	6.0218	3	0	Plateau	4544900000	2179900000	2365000000	1095700000	511660000	584050000	1127600000	503050000	624560000	1174500000	551430000	623110000	1147000000	613800000	533240000	10434	1128	9879	64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625	87104;87105;87106;87107;87108;87109;87110;87111;87112;87113;87114;87115;87116;87117	87111			14	
EANVYHASTANGESR	0	Unmodified	1604.7179	0.7179115	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.202	10.001	3	0.00039752	7551	160511_QHF_FH_JSI11i_2	58.164	46.018			1.4396	1.4202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4396	1.4202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47044000	29228000	17816000	0	0	0	0	0	0	47044000	29228000	17816000	0	0	0	10435	4382	9880	64626	87118	87118			1	
EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK	1	Unmodified	2914.2952	0.29519815	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.76	3.81	14			3						4	6	3	4	48.219	46.343	2;3;4	5.3289E-67	41134	160511_QHF_FH_JSI9i_1	257.72	252.29			1.1199	0.93191	24.117	15	2	Median	1.0856	0.87971	6.4708	4	2	Median	0.7553	0.8863	36.948	4	0	Median	1.2824	1.2556	3.1395	3	0	Median	1.093	1.1551	18.853	4	0	Median	6177900000	2948200000	3229700000	1126600000	546780000	579820000	1071000000	651350000	419660000	2948100000	1252900000	1695200000	1032200000	497230000	534960000	10436	1329	9881	64627;64628;64629;64630;64631;64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642;64643	87119;87120;87121;87122;87123;87124;87125;87126;87127;87128;87129;87130;87131;87132;87133;87134;87135;87136;87137;87138;87139;87140;87141;87142;87143;87144;87145;87146;87147;87148;87149;87150;87151;87152;87153	87145			35	
EAPAGALAAVLK	1	Unmodified	1109.6445	0.64445919	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									2	1	3	69.692	69.02	2	0.00060163	59562	160511_QHF_FH_JSI12i_2	82.749	74.217			0.76316	0.8461	36.781	5	2	Median	NaN	NaN	NaN	0	0	Median	0.64985	0.7795	18.62	2	0	Median	0.88116	0.8461	NaN	1	0	Median	0.98245	1.0557	64.079	2	2	Median	221250000	128570000	92672000	0	0	0	85638000	52633000	33006000	40350000	21449000	18901000	95259000	54493000	40766000	10437	1654	9882	64644;64645;64646;64647;64648;64649	87154;87155;87156;87157;87158	87155			5	
EAPAPPK	1	Unmodified	708.38064	0.38063993	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	5.6	4	2			3	3				1	3	4	4	11.584	7.7536	2	0.010327	7255	160511_QHF_FH_JSI9i_1	75.311	32.31			0.9176	0.95555	18.758	12	0	Median	1.4289	1.1976	NaN	1	0	Median	0.89516	1.0717	3.4831	3	0	Plateau	0.92796	0.89905	22.277	4	0	Median	0.88732	0.95555	9.4433	4	0	Median	12818000000	6643900000	6174600000	3090800000	1481100000	1609700000	3350900000	1839500000	1511400000	3091200000	1582800000	1508400000	3285700000	1740500000	1545200000	10438	2017	9883	64650;64651;64652;64653;64654;64655;64656;64657;64658;64659;64660;64661	87159;87160;87161;87162;87163;87164;87165;87166;87167;87168;87169;87170;87171;87172;87173;87174;87175;87176	87172			18	
EAPAQPAPEK	1	Unmodified	1036.5189	0.51892433	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	2	4	3	13.29	8.7896	2	2.664E-07	8129	160511_QHF_FH_JSI11i_1	113.74	58.136			0.89697	0.94993	24.41	10	2	Median	1.1837	0.9791	NaN	1	0	Median	0.77754	0.91848	11.165	2	0	Median	1.031	0.99751	39.392	4	2	Median	0.83441	0.86821	15.991	3	0	Median	1798200000	879650000	918580000	490720000	208620000	282090000	426100000	235620000	190480000	390820000	193590000	197230000	490590000	241820000	248770000	10439	2672	9884	64662;64663;64664;64665;64666;64667;64668;64669;64670;64671	87177;87178;87179;87180;87181;87182;87183;87184;87185;87186;87187;87188;87189;87190	87177			14	
EAPASVVPFVR	0	Unmodified	1170.6397	0.63970816	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	62.611	61.765	2	1.9135E-05	52956	160511_QHF_FH_JSI12i_2	103.55	91.34			0.8621	0.99478	28.611	4	0	Median	1.4381	1.2342	NaN	1	0	Median	0.87432	1.0433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74804	0.77285	28.972	2	0	Median	272400000	134060000	138340000	80136000	32810000	47326000	64369000	35040000	29329000	0	0	0	127890000	66209000	61686000	10440	2856	9885	64672;64673;64674;64675;64676	87191;87192;87193;87194	87191			3	
EAPATQASSTTQLTDTQVLAAENK	1	Unmodified	2474.2136	0.21364077	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.24	9				2					2	2	3	4	58.5	56.084	2;3	1.4827E-75	50630	160511_QHF_FH_JSI11i_1	284.07	264.83			1.0217	0.95872	14.037	10	0	Median	1.1768	0.96366	0.80979	2	0	Median	0.79247	0.94788	0.13828	2	0	Median	1.0217	0.99769	5.5511	2	0	Median	0.8279	0.85562	20.33	4	0	Linear	2266300000	1238600000	1027700000	718540000	326580000	391970000	514270000	317540000	196730000	452520000	275160000	177360000	580970000	319320000	261650000	10441	5436	9886	64677;64678;64679;64680;64681;64682;64683;64684;64685;64686;64687	87195;87196;87197;87198;87199;87200;87201;87202;87203;87204;87205;87206;87207;87208;87209;87210;87211;87212;87213;87214	87195			20	
EAPATSIATVLPQPMTSAMGK	1	Unmodified	2100.0595	0.059512074	3672	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				87.159	86.336	3	0.039966	76975	160511_QHF_FH_JSI9i_1	24.953	15.857			2.2015	1.7743	NaN	1	1	Median	2.2015	1.7743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19182000	5455300	13727000	19182000	5455300	13727000	0	0	0	0	0	0	0	0	0	10442	3672	9887	64688	87215	87215			1	
EAPCVLIYIPDGHTK	1	Unmodified	1711.8603	0.86034198	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.8	5.63		1						3			1	1	2	76.535	68.333	3	0.0094836	35849	160513_QHF_FH_JSI11Kac_5	37.657	29.058			1.0971	1.2732	26.568	4	1	Median	NaN	NaN	NaN	0	0	Median	0.94803	1.1371	NaN	1	0	Median	0.83017	0.81401	NaN	1	0	Median	1.2845	1.4278	0.2241	2	1	Median	108500000	60115000	48384000	0	0	0	7654500	4161200	3493400	11175000	6373500	4801200	89670000	49580000	40089000	10443	878	9888	64689;64690;64691;64692	87216;87217;87218	87217			3	
EAPDTAEK	1	Unmodified	859.39233	0.39232683	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	2	2	3	6.3323	2.5707	2	0.0010939	3700	160511_QHF_FH_JSI10i_1	94.114	49.583			1.0485	1.0059	17.424	8	0	Median	1.1467	0.94248	NaN	1	0	Median	0.96096	1.1294	14.391	2	0	Median	1.1074	1.0862	12.858	2	0	Median	0.67325	0.72364	24.637	3	0	Plateau	1705000000	882860000	822180000	373020000	185890000	187130000	441350000	241190000	200160000	483820000	245360000	238460000	406850000	210420000	196430000	10444	4014	9889	64693;64694;64695;64696;64697;64698;64699;64700	87219;87220;87221;87222;87223;87224;87225;87226;87227;87228;87229	87225			11	
EAPEPGMEVVK	1	Unmodified	1184.5747	0.57472465	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.343	36.73	2	0.00010845	32712	160511_QHF_FH_JSI10i_1	85.807	70.192			0.90923	0.91314	7.4538	4	1	Median	1.1531	0.9337	NaN	1	1	Median	0.66943	0.79373	NaN	1	0	Median	0.94434	0.91176	NaN	1	0	Median	0.87542	0.91452	NaN	1	0	Median	1864200000	976890000	887260000	408100000	197410000	210690000	478140000	253070000	225070000	512890000	284490000	228410000	465020000	241920000	223100000	10445	241	9890	64701;64702;64703;64704	87230;87231;87232;87233;87234;87235	87233			6	
EAPEPGMEVVK	1	Oxidation (M)	1200.5696	0.56963927	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	8.2	5.88	2					3				1		1	3	33.589	26.906	2	0.00013712	33295	160511_QHF_FH_JSI12i_1	97.565	69.347			1.2235	1.2571	28.926	4	0	Median	1.8757	1.5379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90863	0.88401	NaN	1	0	Median	1.2235	1.2708	30.051	2	0	Median	75765000	31022000	44743000	70318000	28427000	41891000	0	0	0	2999700	1549500	1450200	2447500	1045500	1402000	10446	241	9890	64705;64706;64707;64708;64709	87236;87237;87238;87239;87240	87236		104	5	
EAPEPMELDGPK	1	Unmodified	1311.6017	0.60166768	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.325	42.668	2	7.4238E-06	38804	160511_QHF_FH_JSI12i_1	123.96	113.13			1.5638	1.5163	18.583	4	3	Median	2.0439	1.6802	NaN	1	0	Median	1.1705	1.3684	NaN	1	1	Median	1.3267	1.2628	NaN	1	1	Median	1.8432	1.8939	NaN	1	1	Median	597050000	237560000	359490000	93069000	36593000	56476000	160940000	74245000	86693000	154390000	62234000	92160000	188650000	64484000	124160000	10447	1528	9891	64710;64711;64712;64713	87241;87242;87243;87244;87245;87246	87243			6	
EAPETDTSPSLWDVEFAK	1	Unmodified	2020.9266	0.92656687	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										1	2	3	83.072	82.665	2;3	1.5704E-11	74985	160511_QHF_FH_JSI10i_1	148.52	137.31			0.86638	0.89358	7.7553	5	3	Median	NaN	NaN	NaN	0	0	Median	0.86638	0.9759	NaN	1	0	Median	0.88721	0.85136	NaN	1	0	Median	0.85693	0.89358	8.5826	3	3	Median	133120000	72191000	60931000	0	0	0	30176000	15579000	14597000	33157000	17923000	15234000	69789000	38688000	31100000	10448	3868	9892	64714;64715;64716;64717;64718;64719	87247;87248;87249;87250;87251;87252;87253;87254;87255	87253			9	
EAPETGEERDLMVHNIMK	1	Unmodified	2097.9823	0.98232439	3314	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	50.841	50.723	4	0.0015249	44819	160511_QHF_FH_JSI11i_3	50.831	45.288			0.8538	0.83539	10.748	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8082	0.77426	NaN	1	1	Median	0.90197	0.90135	NaN	1	0	Median	72780000	38439000	34340000	0	0	0	0	0	0	30186000	15254000	14932000	42594000	23185000	19409000	10449	3314	9893	64720;64721	87256;87257;87258	87256			3	
EAPFSEFFLDPGTSVLDTCRK	1	Unmodified	2415.1417	0.1416618	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.05	101.05	3	1.9003E-07	90033	160511_QHF_FH_JSI11i_3	84.689	71.887			0.24437	0.23215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24437	0.23215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56538000	45501000	11037000	0	0	0	0	0	0	56538000	45501000	11037000	0	0	0	10450	5549	9894	64722	87259	87259			1	
EAPFVPVGIAGFAAIVAYGLYK	1	Unmodified	2252.2245	0.22452721	5490	Q9Y241	HIGD1A	HIG1 domain family member 1A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.38			1	1					6	2	1	3	2	102.07	94.059	2;3	8.9252E-89	53466	160513_QHF_FH_JSI9Kac_6	225.86	214.07			0.91622	0.84499	19.314	7	0	Median	0.90955	0.77532	0.4982	2	0	Median	NaN	NaN	NaN	0	0	Median	1.117	1.0512	12.728	3	0	Plateau	0.791	0.83988	34.802	2	0	Median	497420000	241990000	255430000	247860000	110280000	137590000	0	0	0	117020000	56000000	61019000	132540000	75713000	56826000	10451	5490	9895	64723;64724;64725;64726;64727;64728;64729;64730	87260;87261;87262;87263;87264;87265;87266;87267;87268;87269;87270;87271;87272;87273;87274	87267			15	
EAPGPAGGGGGGSR	0	Unmodified	1125.5163	0.51629857	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	7.0493	4.0246	2	9.6755E-10	4219	160511_QHF_FH_JSI9i_1	104.43	43.635			0.98107	1.0685	4.298	5	0	Median	NaN	NaN	NaN	0	0	Median	0.91163	1.0848	NaN	1	0	Median	1.1084	1.0881	2.5745	2	0	Median	0.95812	1.0166	3.6702	2	0	Median	1218400000	641300000	577060000	0	0	0	423400000	225240000	198160000	360200000	187530000	172670000	434760000	228530000	206220000	10452	4349	9896	64731;64732;64733;64734;64735;64736	87275;87276;87277;87278;87279;87280;87281	87280			7	
EAPGPNGATEEDGVPSK	1	Unmodified	1653.7482	0.74820857	1663	P49585	PCYT1A	Choline-phosphate cytidylyltransferase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	25.865	25.165	2	2.3072E-05	22109	160511_QHF_FH_JSI10i_1	97.86	85.283			10.399	31.525	131.21	3	3	Plateau	10.399	8.6011	NaN	1	1	Median	76.533	92.52	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.316	10.742	NaN	1	1	Median	1607200000	56761000	1550500000	490630000	17279000	473350000	640620000	20230000	620390000	0	0	0	475980000	19251000	456730000	10453	1663	9897	64737;64738;64739	87282;87283;87284	87283			3	
EAPLASSANGTEK	1	Unmodified	1273.615	0.61500956	4400	Q9BSK2	SLC25A33	Solute carrier family 25 member 33	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.956	15.512	2	0.0015702	13168	160511_QHF_FH_JSI12i_1	76.143	42.88			0.63286	0.62822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63286	0.62822	NaN	1	0	Median	14278000	10640000	3637600	0	0	0	0	0	0	0	0	0	14278000	10640000	3637600	10454	4400	9898	64740	87285	87285			1	
EAPNPIHLTVDTSLQNGR	0	Unmodified	1960.9967	0.99665254	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.29	0.452		5	2							2		2	3	60.658	59.929	2;3	1.4499E-13	51427	160511_QHF_FH_JSI12i_2	146.1	133.06			1.0253	1.05	10.503	6	3	Median	1.0211	0.88335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0461	1.0108	7.6314	2	1	Median	0.98449	1.0925	7.2509	3	1	Median	329060000	167610000	161450000	13939000	4543200	9395500	0	0	0	66440000	31243000	35197000	248690000	131830000	116860000	10455	120	9899	64741;64742;64743;64744;64745;64746;64747	87286;87287;87288;87289;87290;87291;87292;87293;87294	87289			9	
EAPPMEKPEVVK	2	Unmodified	1352.701	0.70098779	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.73	9	8	3				3	1		5	4	9	6	33.37	31.149	2;3	1.8874E-05	27596	160511_QHF_FH_JSI9i_1	84.365	72.219			0.92414	0.99115	59.863	24	6	Median	1.2527	1.0095	50.356	5	1	Median	0.83863	0.99881	13.344	4	0	Median	0.79852	0.78833	84.536	9	5	Median	1.0064	1.0631	29.563	6	0	Median	19651000000	9747700000	9903300000	3216900000	1359800000	1857100000	4374700000	2183000000	2191700000	7961700000	4189900000	3771800000	4097700000	2015100000	2082600000	10456	2024	9900	64748;64749;64750;64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763;64764;64765;64766;64767;64768;64769;64770;64771	87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310;87311;87312;87313;87314;87315;87316;87317;87318;87319;87320;87321;87322;87323;87324;87325;87326;87327;87328;87329;87330;87331;87332;87333;87334;87335;87336;87337;87338;87339;87340;87341	87326			47	
EAPPMEKPEVVK	2	Oxidation (M)	1368.6959	0.69590241	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.09	0.287	10	1								3	2	3	3	24.99	24.438	3	0.0024742	28249	160511_QHF_FH_JSI12i_1	65.234	55.213			0.92126	0.93293	65.048	11	2	Median	1.3179	1.0973	86.668	3	1	Median	0.81687	0.96491	4.4978	2	0	Median	0.75403	0.73422	23.414	3	0	Plateau	0.89006	0.93293	82.696	3	1	Median	1727000000	877360000	849680000	460740000	136420000	324320000	226030000	131300000	94723000	500620000	274000000	226620000	539650000	335640000	204020000	10457	2024	9900	64772;64773;64774;64775;64776;64777;64778;64779;64780;64781;64782	87342;87343;87344;87345;87346;87347;87348;87349;87350	87346		1684	9	
EAPPMEKPEVVK	2	Acetyl (K);Oxidation (M)	1410.7065	0.7064671	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		46.14	36.794	2	0.0066274	20576	160513_QHF_FH_JSI11Kac_3	53.683	26.568			0.25171	0.24409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25171	0.24409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3595800	2948100	647760	0	0	0	0	0	0	3595800	2948100	647760	0	0	0	10458	2024	9900	64783	87351	87351	2064;2065	1684	1	
EAPPMEKPEVVKTHLR	2	Acetyl (K)	1902.0033	0.003317824	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15.7	0.471								1	2		1	2		53.936	44.219	3;4	0.011379	23860	160513_QHF_FH_JSI11Kac_6	51.265	41.1			0.14675	0.14679	170.98	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1098	1.3321	NaN	1	0	Median	0.79205	0.7899	238	2	1	Median	NaN	NaN	NaN	0	0	Median	58491000	38299000	20191000	0	0	0	6865400	3287800	3577700	51625000	35011000	16614000	0	0	0	10459	2024	9901	64784;64785;64786	87352;87353	87352	2064;2065		2	
EAPTAYSLLIMHR	0	Unmodified	1500.7759	0.77588407	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.61		4	4					2	5	4	5	3	3	72.133	67.589	2;3	2.0167E-33	35552	160513_QHF_FH_JSI9Kac_6	170.18	157.82			0.9815	1.0293	21.85	15	1	Median	1.2944	1.1048	12.717	4	0	Median	0.84503	1.0321	35.111	5	1	Median	1.0775	1.0293	7.1111	3	0	Median	0.90472	0.9765	5.446	3	0	Median	2271200000	1187500000	1083700000	380570000	173850000	206710000	909250000	497220000	412020000	676650000	348730000	327930000	304690000	167690000	137000000	10460	2241	9902	64787;64788;64789;64790;64791;64792;64793;64794;64795;64796;64797;64798;64799;64800;64801	87354;87355;87356;87357;87358;87359;87360;87361;87362;87363;87364;87365;87366;87367;87368;87369;87370;87371;87372;87373;87374;87375;87376	87369			21	
EAPTAYSLLIMHR	0	Oxidation (M)	1516.7708	0.77079869	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				71.179	60.566	3	0.00016952	31446	160513_QHF_FH_JSI9Kac_5	78.705	73.086			1.4306	1.2262	NaN	1	0	Median	1.4306	1.2262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11233000	4583200	6650000	11233000	4583200	6650000	0	0	0	0	0	0	0	0	0	10461	2241	9902	64802	87377	87377		1854	1	
EAPVDVLTQIGR	0	Unmodified	1296.7038	0.70376498	4469	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.26	6	7					2			4	3	3	5	75.726	73.078	2	4.6113E-10	67392	160511_QHF_FH_JSI12i_1	148.32	129.05			0.9737	1.0169	16.659	10	9	Median	1.3544	1.1388	10.33	2	2	Median	0.72919	0.87532	9.0098	3	2	Median	1.0089	0.99142	13.303	2	2	Median	1.0075	1.1112	18.624	3	3	Median	2812100000	1338500000	1473600000	561780000	212590000	349190000	754460000	429760000	324690000	787270000	381140000	406130000	708600000	315040000	393560000	10462	4469	9903	64803;64804;64805;64806;64807;64808;64809;64810;64811;64812;64813;64814;64815;64816;64817	87378;87379;87380;87381;87382;87383;87384;87385;87386;87387;87388;87389;87390;87391;87392;87393	87382			16	
EAPVPSLHLK	1	Unmodified	1089.6182	0.61824444	4597	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	44.546	43.722	3	0.00041028	38409	160511_QHF_FH_JSI10i_2	64.064	45.897			0.9666	1.0211	6.8219	5	0	Median	1.2047	1.045	NaN	1	0	Median	0.84257	1.0164	NaN	1	0	Median	0.9666	0.98775	NaN	1	0	Median	1.0337	1.0963	10.052	2	0	Median	468780000	228540000	240240000	58243000	28715000	29529000	92887000	51882000	41004000	163040000	71546000	91499000	154610000	76401000	78205000	10463	4597	9904	64818;64819;64820;64821;64822	87394;87395;87396;87397	87397			4	
EAPWPSAQSEIR	0	Unmodified	1369.6626	0.66262845	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1.67	0.471	1	2								1		1	1	48.896	47.94	2	0.0037488	40954	160511_QHF_FH_JSI12i_2	55.353	35.363			1.2602	1.3489	44.472	3	0	Median	0.82645	0.70336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6991	1.6461	NaN	1	0	Median	1.2602	1.3489	NaN	1	0	Median	186390000	87737000	98657000	41026000	21133000	19894000	0	0	0	104870000	49471000	55403000	40494000	17133000	23361000	10464	2591	9905	64823;64824;64825	87398	87398			1	
EAQAQGDPVASAIK	1	Unmodified	1383.6994	0.69940789	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.595	31.991	2	0.00015553	28893	160511_QHF_FH_JSI12i_1	118.87	80.061			0.90295	0.89678	10.184	4	0	Median	0.9605	0.77847	NaN	1	0	Median	0.8402	0.99738	NaN	1	0	Median	0.95627	0.89033	NaN	1	0	Median	0.8526	0.90328	NaN	1	0	Median	237350000	116530000	120820000	50370000	25822000	24548000	59364000	30689000	28675000	67754000	31414000	36340000	59861000	28606000	31255000	10465	426	9906	64826;64827;64828;64829	87399;87400;87401;87402	87400			4	
EAQAVPATLPELEATK	1	Unmodified	1666.8778	0.87776618	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	65.423	64.828	2;3	2.6377E-05	58628	160511_QHF_FH_JSI10i_1	106.32	92.165			0.9872	0.92149	19.177	9	2	Median	1.0188	0.82583	3.3956	2	0	Median	0.79478	0.92273	7.8674	2	0	Median	1.1801	1.1678	24.457	3	2	Median	0.9618	0.99312	10.587	2	0	Median	661990000	314690000	347290000	128150000	59554000	68601000	150070000	79544000	70527000	241540000	102550000	139000000	142220000	73049000	69172000	10466	2636	9907	64830;64831;64832;64833;64834;64835;64836;64837;64838	87403;87404;87405;87406;87407;87408;87409;87410;87411;87412;87413	87410			11	
EAQDDLVK	1	Unmodified	916.45018	0.45017606	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				1	3	3	4	18.338	13.612	2	0.00048829	12024	160511_QHF_FH_JSI10i_1	106.6	73.242			0.97786	1.071	21.094	11	3	Median	1.6639	1.3507	NaN	1	0	Median	0.7514	0.90013	16.712	3	1	Median	1.1294	1.071	17.991	3	0	Median	1.0114	1.069	26.551	4	2	Median	4330600000	2034000000	2296500000	880740000	392870000	487870000	1143400000	572700000	570720000	1140500000	489140000	651350000	1165900000	579330000	586600000	10467	1073	9908	64839;64840;64841;64842;64843;64844;64845;64846;64847;64848;64849	87414;87415;87416;87417;87418;87419;87420;87421;87422;87423;87424;87425;87426;87427;87428;87429	87419			16	
EAQDDLVKTK	2	Acetyl (K)	1187.6034	0.60338224	1073	P15311	EZR	Ezrin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12.3	0.471					2	1						2	1	31.914	23.445	2	0.00013263	14073	160513_QHF_FH_JSI11Kac_3	97.734	59.431			0.064686	0.071715	93.021	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.03436	0.033076	115.38	2	2	Median	0.064686	0.071715	NaN	1	1	Median	9928200	9700500	227630	0	0	0	0	0	0	8641700	8474200	167500	1286500	1226300	60136	10468	1073	9909	64850;64851;64852	87430;87431;87432	87431	911		3	
EAQELSLEK	1	Unmodified	1045.5292	0.52915466	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.014	27.3	2	0.0033608	24017	160511_QHF_FH_JSI10i_1	70.908	44.803			1.2495	1.0119	81.992	3	2	Median	1.2495	1.0119	NaN	1	0	Median	1.5348	1.7314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32394	0.34596	NaN	1	1	Median	116330000	66080000	50254000	42307000	20264000	22042000	33663000	14342000	19321000	0	0	0	40365000	31474000	8890200	10469	4721	9910	64853;64854;64855	87433;87434;87435	87434			2	
EAQELSQNSAIK	1	Unmodified	1316.6572	0.65720872	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				1	3	3	3	24.096	21.359	2	1.6949E-41	18233	160511_QHF_FH_JSI9i_1	199.33	160.58			0.97637	0.99988	61.79	10	7	Median	1.3425	1.111	NaN	1	0	Median	0.79097	0.94463	82.316	3	3	Plateau	0.98111	0.96344	64.371	3	2	Median	0.97165	1.0377	74.036	3	2	Median	3127600000	1595000000	1532700000	541590000	256840000	284740000	713450000	364600000	348850000	935910000	447030000	488880000	936700000	526520000	410180000	10470	4940	9911	64856;64857;64858;64859;64860;64861;64862;64863;64864;64865	87436;87437;87438;87439;87440;87441;87442;87443;87444;87445;87446;87447	87445			12	
EAQGNSSAGVEAAEQRPVEDGER	0	Unmodified	2385.0793	0.079272552	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		23.576	23.359	3	1.1699E-16	20444	160511_QHF_FH_JSI10i_1	129.32	122.06			0.96132	1.0336	9.7292	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83275	0.96492	NaN	1	0	Median	1.1097	1.1072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	284150000	148040000	136100000	0	0	0	152960000	86551000	66407000	131190000	61489000	69698000	0	0	0	10471	3083	9912	64866;64867	87448;87449;87450;87451	87451			4	
EAQKQASEK	2	Acetyl (K)	1059.5197	0.51965261	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	1	0	0	1			By matching	By MS/MS	12	0					2							1	1	5.767	-1.4411	2	0.01952	1732	160513_QHF_FH_JSI12Kac_2	54.416	30.262			1.1666	1.2104	22.827	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4446	1.4224	NaN	1	0	Median	0.94202	1.03	NaN	1	0	Median	2857800	1376500	1481300	0	0	0	0	0	0	1094500	381280	713250	1763200	995200	768020	10472	5294	9913	64868;64869	87452	87452	3355		1	
EAQLAALQYEEEK	1	Unmodified	1520.7359	0.73585297	4123	Q96II8	LRCH3	Leucine-rich repeat and calponin homology domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			50.063	49.642	2	1.8464E-05	44724	160511_QHF_FH_JSI10i_1	84.365	45.615			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10473	4123	9914	64870	87453	87453			1	
EAQLYAAQAHLK	1	Unmodified	1341.7041	0.70409934	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.23		8	2				2	10	7	7	7	8	7	39.227	32.729	2;3	1.0468E-15	27817	160511_QHF_FH_JSI12i_2	186.78	171.63			0.88611	0.94671	30.031	27	9	Median	1.0508	0.89146	24.835	6	1	Median	0.77401	0.94842	25.671	7	2	Median	1.1188	1.0776	41.997	7	3	Median	0.86349	0.95368	26.825	7	3	Median	3596000000	1687200000	1908800000	649610000	246030000	403580000	873870000	487700000	386170000	1398200000	566550000	831700000	674260000	386910000	287350000	10474	1649	9915	64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884;64885;64886;64887;64888;64889;64890;64891;64892;64893;64894;64895;64896;64897;64898;64899	87454;87455;87456;87457;87458;87459;87460;87461;87462;87463;87464;87465;87466;87467;87468;87469;87470;87471;87472;87473;87474;87475;87476;87477;87478;87479;87480;87481;87482;87483;87484;87485;87486;87487;87488;87489;87490;87491;87492;87493;87494;87495;87496;87497;87498;87499	87456			46	
EAQMAAK	1	Unmodified	747.35852	0.35852428	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	5.54	2	1	1		1	3				2	1	2	3	5.6457	1.2489	2	0.0093032	3037	160511_QHF_FH_JSI12i_1	69.383	51.822			1.1308	1.1231	18.967	7	1	Median	1.3762	1.1254	0.28967	2	0	Median	1.1308	1.3462	NaN	1	0	Median	1.0793	1.0471	4.1044	2	0	Median	1.2268	1.3749	34.425	2	1	Median	2941100000	1267800000	1673300000	2555800000	1142100000	1413800000	18536000	9869900	8665800	45967000	24632000	21335000	320780000	91236000	229540000	10475	1105	9916	64900;64901;64902;64903;64904;64905;64906;64907	87500;87501;87502;87503;87504;87505;87506;87507;87508;87509	87501			10	
EAQMAAKLER	1	Acetyl (K);Oxidation (M)	1203.5918	0.59177169	1105	P16949	STMN1	Stathmin	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.1	0.35						6	1				2	2	3	24.741	17.299	2	0.00093807	10673	160513_QHF_FH_JSI12Kac_3	82.417	64.597			0.76548	0.77299	34.126	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0112	1.1932	8.5715	2	0	Median	0.60037	0.57755	32.559	2	0	Median	0.71377	0.77299	16.703	3	0	Median	26019000	14766000	11253000	0	0	0	6732100	3365000	3367100	4913100	2809800	2103300	14374000	8591600	5782500	10476	1105	9917	64908;64909;64910;64911;64912;64913;64914	87510;87511;87512;87513;87514;87515;87516	87511	959	745	7	
EAQNLSAMEIR	0	Unmodified	1260.6132	0.61323542	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		41.029	40.261	2	1.0142E-05	36162	160511_QHF_FH_JSI11i_1	110.39	75.092			0.73515	0.66066	16.09	2	2	Median	0.70971	0.58961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76151	0.74027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	496690000	264840000	231860000	202660000	106210000	96446000	0	0	0	294040000	158630000	135410000	0	0	0	10477	4983	9918	64915;64916	87517;87518	87517			2	
EAQNLSAMEIRK	1	Unmodified	1388.7082	0.70819844	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.475	30.41	3	0.0036159	25666	160511_QHF_FH_JSI12i_3	50.207	39.282			0.49133	0.49806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49133	0.49806	NaN	1	1	Median	28984000	21139000	7845500	0	0	0	0	0	0	0	0	0	28984000	21139000	7845500	10478	4983	9919	64917	87519;87520	87520			2	
EAQNQPIDK	1	Unmodified	1041.5091	0.50908792	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.2163	7.8669	2	7.9461E-07	5743	160511_QHF_FH_JSI12i_1	136.57	114.88			1.14	1.1673	11.331	4	0	Median	1.1747	0.96956	NaN	1	0	Median	1.0229	1.1834	NaN	1	0	Median	1.3057	1.265	NaN	1	0	Median	1.1063	1.1514	NaN	1	0	Median	639790000	318510000	321280000	157630000	78473000	79158000	166340000	85944000	80401000	166540000	76320000	90216000	149280000	77778000	71503000	10479	2338	9920	64918;64919;64920;64921	87521;87522;87523;87524;87525;87526;87527	87522			7	
EAQNSHVYWWR	0	Unmodified	1474.6742	0.67419619	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			51.318	42.71	3	0.00021299	23515	160513_QHF_FH_JSI10Kac_6	79.492	73.216			0.79346	0.94094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79346	0.94094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25191000	14483000	10708000	0	0	0	25191000	14483000	10708000	0	0	0	0	0	0	10480	5534	9921	64922	87528	87528			1	
EAQQALGSAAADATEAK	1	Unmodified	1630.7798	0.77984305	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.067	33.823	2	0.00089861	29724	160511_QHF_FH_JSI9i_1	60.196	53.813			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10481	983	9922	64923	87529	87529			1	
EAQQVYGGK	1	Unmodified	978.47706	0.47705951	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.4659	9.1003	2	0.0001054	6799	160511_QHF_FH_JSI11i_1	93.267	56.566			0.94084	0.97765	17.674	4	0	Median	1.3226	1.0677	NaN	1	0	Median	0.97781	1.1678	NaN	1	0	Median	0.90527	0.89519	NaN	1	0	Median	0.75255	0.78713	NaN	1	0	Median	965760000	570180000	395590000	234410000	121410000	113000000	264150000	164280000	99870000	229090000	142090000	86999000	238110000	142390000	95722000	10482	4773	9923	64924;64925;64926;64927	87530;87531	87530			2	
EAQSFISAAIEPESGK	1	Unmodified	1662.8101	0.81008055	3806	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	64.309	63.465	2;3	0.00011741	57855	160511_QHF_FH_JSI12i_1	92.939	60.416			1.0861	1.0058	54.145	2	1	Median	1.807	1.475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65281	0.68587	NaN	1	1	Median	46951000	24127000	22825000	16748000	9712300	7035300	0	0	0	0	0	0	30204000	14414000	15789000	10483	3806	9924	64928;64929	87532;87533	87532			2	
EAQSLISAAIEPDK	1	Unmodified	1470.7566	0.75658842	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				61.866	60.78	2	0.0013603	53989	160511_QHF_FH_JSI9i_1	60.161	42.726			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10484	2230	9925	64930	87534	87534			1	
EAQSQLIK	1	Unmodified	915.50255	0.50254598	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	17.789	15.062	2	0.0030956	12979	160511_QHF_FH_JSI12i_1	81.642	22.725			1.0133	1.1284	8.5596	3	1	Median	NaN	NaN	NaN	0	0	Median	0.98867	1.1284	NaN	1	0	Median	1.0133	0.98696	NaN	1	0	Median	1.0999	1.1574	NaN	1	1	Median	262440000	147550000	114890000	0	0	0	119320000	62896000	56420000	3659400	1457200	2202200	139470000	83201000	56267000	10485	2373	9926	64931;64932;64933	87535;87536;87537	87535			3	
EAQTLDSQIQETSI	0	Unmodified	1561.7471	0.74714594	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.33	6			2						1	2	3	2	62.579	59.735	2	0.00012575	53146	160511_QHF_FH_JSI9i_1	126.19	113.58			1.0061	0.99865	5.6755	8	5	Median	1.1749	0.96278	NaN	1	1	Median	0.87159	0.99865	1.5123	2	0	Median	1.0303	0.99446	6.3198	3	2	Plateau	1.0567	1.0752	2.6845	2	2	Median	801300000	385990000	415310000	106440000	51162000	55282000	133110000	79867000	53241000	297640000	135180000	162460000	264110000	119780000	144330000	10486	1298	9927	64934;64935;64936;64937;64938;64939;64940;64941	87538;87539;87540;87541;87542;87543;87544;87545;87546	87544			9	
EAQTLQQYR	0	Unmodified	1135.5622	0.56218613	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	17.756	17.461	2	0.00082248	15027	160511_QHF_FH_JSI12i_1	84.743	30.538			1.7822	1.7659	1.5806	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8728	1.7858	NaN	1	1	Median	1.696	1.7463	NaN	1	1	Median	60015000	24140000	35875000	0	0	0	0	0	0	25416000	12023000	13393000	34600000	12118000	22482000	10487	1530;1750	9928	64942;64943	87547;87548	87548			2	
EAQTSFLHLGYLPNQLFR	0	Unmodified	2133.1007	0.10072368	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.33		4	6						5	3	4	4	4	95.826	92.987	2;3	2.2954E-45	46252	160513_QHF_FH_JSI10Kac_6	188.82	171.22			1.0183	1.0252	7.3036	14	2	Median	1.2803	1.0318	6.2953	3	0	Median	0.87175	1.1787	9.7897	4	0	Linear	1.1963	1.119	5.3301	4	2	Linear	0.90935	0.97079	9.9877	3	0	Median	2947300000	1473500000	1473800000	738770000	367380000	371390000	887360000	472360000	415000000	750430000	358750000	391680000	570760000	275020000	295740000	10488	3828	9929	64944;64945;64946;64947;64948;64949;64950;64951;64952;64953;64954;64955;64956;64957;64958	87549;87550;87551;87552;87553;87554;87555;87556;87557;87558;87559;87560;87561;87562;87563;87564;87565;87566;87567;87568;87569;87570;87571;87572;87573;87574	87572			26	
EAQVNVR	0	Unmodified	814.42972	0.42971539	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			1	3	2	1	9.2415	7.8439	2	0.010337	6445	160511_QHF_FH_JSI10i_1	75.269	34.417			0.80825	0.73805	14.473	7	2	Median	0.88988	0.73805	NaN	1	0	Median	0.55079	0.65103	23.241	3	1	Plateau	0.82963	0.80994	3.221	2	1	Median	0.66057	0.7006	NaN	1	0	Median	1963100000	1174700000	788330000	325020000	185010000	140000000	720750000	464430000	256320000	488170000	275660000	212510000	429140000	249650000	179490000	10489	5542	9930	64959;64960;64961;64962;64963;64964;64965	87575;87576;87577;87578;87579;87580;87581;87582	87577			8	
EAQVYQAFK	1	Unmodified	1082.5397	0.53965977	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	37.626	35.081	2	0.00027585	31034	160511_QHF_FH_JSI9i_1	95.909	62.647			0.86723	0.91676	37.719	5	2	Median	0.78867	0.65341	NaN	1	1	Median	0.86723	1.0236	NaN	1	0	Median	0.67994	0.65808	46.883	2	1	Median	1.1723	1.2115	NaN	1	0	Median	467840000	261710000	206130000	94542000	40260000	54282000	113070000	74362000	38706000	157660000	86920000	70744000	102560000	60167000	42395000	10490	4122	9931	64966;64967;64968;64969;64970	87583;87584;87585;87586;87587	87587			5	
EASADLSPYVR	0	Unmodified	1206.5881	0.58806652	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	40.854	40.217	2	3.4827E-24	36229	160511_QHF_FH_JSI11i_1	182.65	163.55			1.1226	1.0951	15.625	4	2	Median	1.1168	0.92137	NaN	1	1	Median	1.1626	1.3498	NaN	1	1	Median	1.1285	1.0966	NaN	1	0	Median	1.0485	1.0937	NaN	1	0	Median	570080000	274260000	295820000	99744000	45437000	54307000	153840000	68256000	85584000	168460000	86494000	81966000	148040000	74074000	73966000	10491	107	9932	64971;64972;64973;64974;64975	87588;87589;87590;87591;87592;87593	87589			6	
EASAESDVGK	1	Unmodified	991.44582	0.44581896	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	7.4217	7.1862	2	0.00023715	5054	160511_QHF_FH_JSI12i_1	80.755	37.672			0.97184	1.0614	73.966	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0125	1.1779	NaN	1	0	Median	0.30923	0.298	NaN	1	1	Median	0.92868	0.95161	NaN	1	0	Median	186510000	102950000	83561000	0	0	0	69236000	35026000	34210000	48239000	32015000	16224000	69039000	35912000	33127000	10492	1305	9933	64976;64977;64978	87594;87595	87595			2	
EASAVLFTITK	1	Unmodified	1178.6547	0.65468953	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.89	3						4	5		1	5	3	3	75.613	66.054	2	2.62E-07	34961	160513_QHF_FH_JSI10Kac_4	113.93	101.88			1.0471	1.1144	31.163	10	1	Median	1.0547	0.87298	NaN	1	0	Median	0.9705	1.1507	32.135	4	1	Median	1.1858	1.161	50.491	3	0	Median	1.0304	1.1298	9.8494	2	0	Median	109240000	57456000	51786000	10007000	4935000	5071700	68002000	36496000	31506000	21503000	10354000	11148000	9731300	5671300	4060000	10493	1755	9934	64979;64980;64981;64982;64983;64984;64985;64986;64987;64988;64989;64990	87596;87597;87598;87599;87600;87601;87602;87603;87604;87605;87606;87607;87608	87598			13	
EASDIILTDDNFTSIVK	1	Unmodified	1879.9415	0.94148865	1168;1239;2758	P23634;P20020;Q16720	ATP2B4;ATP2B1;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	89.396	89.018	2;3	6.1185E-17	80685	160511_QHF_FH_JSI10i_1	203.7	180.32			1.0958	0.98903	37.561	8	4	Median	1.1878	0.95917	NaN	1	0	Median	0.65943	0.76812	13.048	2	2	Median	1.0992	1.0198	46.55	3	2	Median	1.3405	1.3995	31.302	2	0	Median	531380000	265440000	265950000	51247000	22341000	28907000	208060000	128920000	79145000	149550000	65660000	83886000	122530000	48520000	74008000	10494	1239;1168;2758	9935	64991;64992;64993;64994;64995;64996;64997;64998;64999	87609;87610;87611;87612;87613;87614;87615;87616;87617;87618;87619;87620;87621;87622	87619			13	
EASDPQPEEADGGLK	1	Unmodified	1541.6845	0.68454569	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.29	4			1	2					1	1	2	3	27.378	23.482	2	8.2599E-83	20810	160511_QHF_FH_JSI12i_1	253.54	224.58			0.92179	0.97578	19.94	7	0	Median	1.3291	1.0778	NaN	1	0	Median	0.86618	1.025	NaN	1	0	Median	1.2062	1.1711	38.312	2	0	Median	0.92179	0.96062	9.2768	3	0	Median	1735600000	859970000	875590000	421200000	170410000	250790000	493010000	273860000	219150000	364440000	169560000	194880000	456910000	246140000	210770000	10495	1788	9936	65000;65001;65002;65003;65004;65005;65006	87623;87624;87625;87626;87627;87628;87629;87630;87631;87632;87633;87634	87628			12	
EASFDGISK	1	Unmodified	952.45018	0.45017606	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		29.729	28.774	2	0.0012499	24975	160511_QHF_FH_JSI9i_1	78.334	33.887			3.3059	2.6928	85.151	3	3	Plateau	3.3875	2.7858	4.8005	2	2	Median	10.429	12.161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	407500000	93375000	314130000	359460000	88415000	271050000	48039000	4959900	43079000	0	0	0	0	0	0	10496	1022	9937	65007;65008;65009;65010	87635;87636;87637;87638	87637			4	
EASFEYLQNEGER	0	Unmodified	1570.69	0.68996541	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.824	47.143	2	2.6887E-10	42586	160511_QHF_FH_JSI11i_1	147.28	130.44			1.0888	1.0852	7.4904	4	0	Median	1.4944	1.2201	NaN	1	0	Median	0.89182	1.0612	NaN	1	0	Median	1.1941	1.1096	NaN	1	0	Median	0.99278	1.0268	NaN	1	0	Median	269940000	119610000	150330000	67830000	23284000	44546000	60816000	27605000	33211000	68061000	28770000	39291000	73236000	39952000	33284000	10497	2348	9938	65011;65012;65013;65014	87639;87640;87641;87642;87643;87644;87645;87646	87641			8	
EASFSPTDNK	1	Unmodified	1094.488	0.48801813	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.842	17.357	2	0.00024691	14783	160511_QHF_FH_JSI10i_1	80.455	64.956			0.81319	0.84551	15.956	4	1	Median	1.3004	1.0482	NaN	1	0	Median	0.69017	0.77838	NaN	1	0	Median	0.95733	0.91842	NaN	1	0	Median	0.69076	0.73899	NaN	1	1	Median	147010000	70618000	76395000	41830000	13549000	28281000	33713000	18580000	15133000	31216000	16561000	14655000	40254000	21928000	18326000	10498	4591	9939	65015;65016;65017;65018	87647;87648;87649	87649			2	
EASFVLHTIGK	1	Unmodified	1200.6503	0.65027285	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		3	2						3	4	1	1	2	51.884	49.393	2;3	7.0986E-10	41890	160511_QHF_FH_JSI12i_3	137.95	111			0.73414	0.69585	106.04	6	5	Median	2.1264	1.7945	138.89	2	2	Median	0.17396	0.21311	NaN	1	1	Median	0.4238	0.4076	NaN	1	1	Median	0.83619	0.93468	36.819	2	1	Median	190090000	106010000	84086000	33780000	14505000	19274000	31624000	24993000	6631100	10908000	6161600	4746600	113780000	60347000	53434000	10499	2669	9940	65019;65020;65021;65022;65023;65024;65025;65026	87650;87651;87652;87653;87654;87655;87656;87657	87657			8	
EASGDLPEAQIVK	1	Unmodified	1355.6933	0.69325988	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.92	45.243	2	2.5431E-06	40787	160511_QHF_FH_JSI11i_1	121.36	101.57			0.49453	0.5121	15.258	4	3	Median	0.65417	0.53389	NaN	1	0	Median	0.48549	0.56585	NaN	1	1	Median	0.50373	0.49121	NaN	1	1	Median	0.37764	0.39925	NaN	1	1	Median	959200000	633710000	325490000	131210000	58707000	72506000	243590000	177700000	65894000	258670000	172500000	86177000	325720000	224810000	100910000	10500	1790	9941	65027;65028;65029;65030	87658;87659;87660;87661	87658			4	
EASGETTGVDITK	1	Unmodified	1306.6252	0.62523989	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.866	24.307	2	1.2266E-11	21324	160511_QHF_FH_JSI10i_1	202.16	174.42			0.82678	0.86694	14.149	4	2	Linear	0.89747	0.75161	NaN	1	0	Median	0.55879	0.64976	NaN	1	1	Median	0.77831	0.73368	NaN	1	1	Median	0.87826	0.91442	NaN	1	0	Median	290230000	153380000	136850000	78767000	42846000	35922000	49753000	25280000	24474000	71747000	34980000	36767000	89967000	50276000	39690000	10501	484	9942	65031;65032;65033;65034	87662;87663;87664;87665;87666;87667	87665			6	
EASGILK	1	Unmodified	716.40685	0.40685468	3808;5359	Q8WXE0;Q9UK45	CASKIN2;LSM7	Caskin-2;U6 snRNA-associated Sm-like protein LSm7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	16.022	15.542	2	0.019269	13293	160511_QHF_FH_JSI12i_1	58.604	18.942			1.006	0.85319	11.729	6	0	Median	1.0062	0.83795	0.44112	2	0	Median	0.71125	0.8444	NaN	1	0	Median	1.0645	1.0601	0.68106	2	0	Median	0.80235	0.86207	NaN	1	0	Median	1838400000	975790000	862650000	381080000	172830000	208260000	460820000	276760000	184060000	598080000	284930000	313160000	398450000	241280000	157170000	10502	3808;5359	9943	65035;65036;65037;65038;65039;65040	87668;87669	87668			2	
EASGLSADSLAR	0	Unmodified	1175.5782	0.57823012	4752	Q9H6T0	ESRP2	Epithelial splicing regulatory protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.705	31.44	2	0.0095219	27519	160511_QHF_FH_JSI9i_1	48.741	37.59			0.41385	0.34104	NaN	1	0	Median	0.41385	0.34104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43744000	27206000	16538000	43744000	27206000	16538000	0	0	0	0	0	0	0	0	0	10503	4752	9944	65041	87670	87670			1	
EASIDILHSIVK	1	Unmodified	1323.7398	0.73981614	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	75.381	74.526	3	1.1831E-05	64474	160511_QHF_FH_JSI12i_2	98.942	89.287			0.8855	0.91959	15.708	4	0	Median	1.0127	0.851	NaN	1	0	Median	0.82318	0.9937	NaN	1	0	Median	0.76134	0.7553	NaN	1	0	Median	0.95254	1.0727	NaN	1	0	Median	283050000	157400000	125640000	50135000	28301000	21834000	52322000	34329000	17993000	87426000	49451000	37975000	93164000	45323000	47842000	10504	109	9945	65042;65043;65044;65045	87671	87671			1	
EASLGEASK	1	Unmodified	890.43453	0.434526	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			10.435	9.9227	2	0.031707	7681	160511_QHF_FH_JSI10i_1	47.869	20.035			0.39676	0.38928	12.573	2	2	Median	0.51646	0.42548	NaN	1	1	Median	0.3048	0.35617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111520000	64573000	46946000	54144000	31287000	22857000	57376000	33286000	24090000	0	0	0	0	0	0	10505	2162	9946	65046;65047	87672;87673	87672			2	
EASMMEYVLYSLDLYNDSAHYALTR	0	Unmodified	2954.3466	0.34664555	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.078	90.651	3	1.7829E-93	53866	160513_QHF_FH_JSI10Kac_6	220.23	213.12			1.263	1.2636	3.4646	2	0	Median	1.4889	1.2949	NaN	1	0	Median	1.0714	1.233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259960000	120220000	139740000	75767000	33811000	41956000	184200000	86413000	97784000	0	0	0	0	0	0	10506	3229	9947	65048;65049	87674;87675	87675			2	
EASPNPEDGIVR	0	Unmodified	1282.6153	0.61534391	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	32.849	29.516	2	9.3621E-06	26544	160511_QHF_FH_JSI12i_1	119.22	107.18			1.22	1.0552	10.743	6	2	Linear	1.2442	1.0277	NaN	1	0	Median	1.0137	1.2095	NaN	1	1	Median	1.3003	1.2443	2.2362	2	1	Median	1.0793	1.1472	17.599	2	0	Median	429000000	211310000	217690000	89195000	36260000	52935000	131600000	74681000	56915000	79989000	37532000	42456000	128220000	62838000	65382000	10507	236	9948	65050;65051;65052;65053;65054;65055;65056	87676;87677;87678;87679;87680;87681;87682;87683;87684;87685	87678			10	
EASRPPEEPSAPSPTLPAQFK	1	Unmodified	2235.1172	0.11716161	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	3	1	56.155	55.464	3	1.4993E-05	48029	160511_QHF_FH_JSI11i_2	64.522	55.698			1.0643	1.0154	15.205	6	1	Median	1.0335	0.88356	13.93	2	1	Median	0.82781	0.96222	NaN	1	0	Median	1.189	1.1569	12.708	2	0	Median	1.0571	1.0855	NaN	1	0	Median	258740000	132380000	126360000	60771000	25912000	34859000	49620000	32266000	17354000	93902000	50957000	42945000	54449000	23243000	31205000	10508	4699	9949	65057;65058;65059;65060;65061;65062;65063	87686;87687;87688;87689;87690;87691;87692;87693	87692			8	
EASSASQFEELEIVLK	1	Unmodified	1778.8938	0.89381018	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	92.271	92.046	2	4.8815E-40	83340	160511_QHF_FH_JSI10i_1	202.32	187.44			0.69579	0.77103	47.239	2	0	Median	NaN	NaN	NaN	0	0	Median	0.47283	0.55208	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0239	1.0768	NaN	1	0	Median	75970000	42376000	33595000	0	0	0	38102000	26236000	11866000	0	0	0	37868000	16139000	21729000	10509	3328	9950	65064;65065	87694;87695	87695			2	
EASSVSEELHK	1	Unmodified	1214.5779	0.57789577	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	17.66	16.625	2	0.0016582	13444	160511_QHF_FH_JSI12i_2	75.378	42.538			1.9821	2.134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9821	2.134	NaN	1	1	Median	22906000	6990700	15915000	0	0	0	0	0	0	0	0	0	22906000	6990700	15915000	10510	4578	9951	65066	87696	87696			1	
EASTAVSTPEAPEPPSQEQWAIPVDATSPVGDFYR	0	Unmodified	3728.7482	0.74821516	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		100.31	100.19	3	6.8351E-05	90933	160511_QHF_FH_JSI11i_1	39.343	34.721			1.4094	1.3624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4094	1.3624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12652000	3212900	9439200	0	0	0	0	0	0	12652000	3212900	9439200	0	0	0	10511	2677	9952	65067	87697	87697			1	
EASYSLIRK	1	Unmodified	1065.5819	0.58185894	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.466	24.191	2	0.011331	20007	160511_QHF_FH_JSI10i_3	63.419	36.817			0.21075	0.24094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21075	0.24094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153250000	135060000	18191000	0	0	0	153250000	135060000	18191000	0	0	0	0	0	0	10512	2927	9953	65068	87698	87698			1	
EATADDLIK	1	Unmodified	974.49204	0.49204087	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	34.126	30.727	2	5.6693E-06	27364	160511_QHF_FH_JSI10i_1	114.89	61.728			0.85626	0.92492	16.736	6	0	Median	1.1482	0.93353	NaN	1	0	Median	0.65018	0.76323	25.864	2	0	Median	0.87972	0.86129	13.703	2	0	Median	0.92557	0.98774	NaN	1	0	Median	1207000000	616320000	590710000	271310000	128310000	143000000	308350000	179300000	129050000	277420000	124570000	152850000	349960000	184140000	165820000	10513	2734	9954	65069;65070;65071;65072;65073;65074	87699;87700;87701;87702;87703;87704;87705;87706;87707;87708;87709	87705			11	
EATAGNPGGQTVR	0	Unmodified	1256.6109	0.61092723	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	11.894	7.0271	2	5.0149E-05	7231	160511_QHF_FH_JSI10i_1	168.3	147.78			0.76888	0.92794	13.516	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.76821	0.92794	NaN	1	1	Median	1.0616	1.0109	NaN	1	0	Median	1.1076	1.2093	NaN	1	0	Median	278050000	179340000	98707000	0	0	0	270710000	175640000	95074000	4586600	2426900	2159700	2749400	1276600	1472800	10514	1296	9955	65075;65076;65077	87710;87711;87712;87713;87714	87712			5	
EATAPGKWK	2	Acetyl (K)	1028.5291	0.52909508	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	34.652	25.287	2	0.0033582	14997	160513_QHF_FH_JSI10Kac_4	79.713	64.051			0.87377	0.9794	8.4134	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84087	0.9794	NaN	1	0	Median	0.87377	0.86226	NaN	1	0	Median	0.92825	1.0108	NaN	1	0	Median	29394000	16753000	12642000	0	0	0	10445000	6399300	4046000	8966400	4891300	4075100	9982600	5462200	4520400	10515	3777	9956	65078;65079;65080	87715;87716;87717;87718	87715	2933		4	
EATAQKPTGSVGSTVTTPPPLVR	1	Unmodified	2293.2278	0.22777469	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		49.607	48.938	3	2.2085E-05	43144	160511_QHF_FH_JSI10i_2	60.278	48.218			1.2064	1.0865	55.85	3	2	Median	1.2064	1.0865	NaN	1	0	Median	1.4602	1.7673	NaN	1	1	Median	0.63552	0.58009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89090000	38615000	50475000	36291000	16107000	20184000	20719000	7278400	13440000	32080000	15229000	16851000	0	0	0	10516	3386	9957	65081;65082;65083;65084	87719;87720;87721;87722;87723;87724	87724			6	
EATDAIGHLDR	0	Unmodified	1196.5786	0.57856447	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.39	2	8	1				2			3	2	3	5	25.913	23.851	2;3	3.4928E-59	19921	160511_QHF_FH_JSI11i_2	225.67	170.14			0.92394	1.0085	18.35	13	1	Median	1.3856	1.1764	11.67	3	0	Median	1.0217	1.2705	4.0363	2	0	Median	1.1215	1.1604	19.38	3	0	Plateau	0.86667	0.89175	9.6002	5	1	Median	2220400000	1125200000	1095200000	305630000	125760000	179870000	414430000	215370000	199060000	909800000	479560000	430240000	590580000	304500000	286090000	10517	2325	9958	65085;65086;65087;65088;65089;65090;65091;65092;65093;65094;65095;65096;65097	87725;87726;87727;87728;87729;87730;87731;87732;87733;87734;87735;87736;87737;87738;87739;87740;87741;87742;87743;87744	87735			20	
EATDEELEK	1	Unmodified	1062.4717	0.47169936	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.252	12.991	2	0.00014146	10766	160511_QHF_FH_JSI12i_1	107.57	73.778			0.79691	0.84233	29.142	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.205	1.3987	NaN	1	1	Median	0.86634	0.8464	NaN	1	1	Median	0.79691	0.84233	NaN	1	1	Median	261880000	156050000	105830000	0	0	0	70942000	39840000	31102000	86079000	54670000	31408000	104860000	61542000	43317000	10518	2457	9959	65098;65099;65100	87745;87746;87747;87748	87747			4	
EATDEELER	0	Unmodified	1090.4778	0.47784737	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.201	12.94	2	1.952E-05	10741	160511_QHF_FH_JSI12i_1	121.05	113.48			1.4091	1.3506	40.77	3	1	Median	NaN	NaN	NaN	0	0	Median	2.1604	2.5546	NaN	1	1	Median	1.4091	1.3506	NaN	1	0	Median	1.1385	1.1958	NaN	1	0	Median	400060000	161470000	238580000	0	0	0	110470000	35204000	75265000	151630000	63784000	87849000	137950000	62485000	75469000	10519	2456	9960	65101;65102;65103	87749;87750;87751;87752;87753	87752			5	
EATELNEDGSQVK	1	Unmodified	1418.6525	0.65251728	25	A6NED2	RCCD1	RCC1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	20.184	19.752	2	3.8454E-10	17164	160511_QHF_FH_JSI12i_1	143.79	113.22			0.75111	0.77963	37.984	5	3	Median	1.0016	0.8354	NaN	1	1	Median	0.58922	0.69241	NaN	1	0	Median	0.61225	0.59424	69.357	2	2	Median	0.75111	0.77963	NaN	1	0	Median	154230000	100330000	53901000	23695000	13366000	10329000	28234000	21015000	7218900	48850000	29085000	19765000	53454000	36866000	16588000	10520	25	9961	65104;65105;65106;65107;65108	87754;87755;87756;87757;87758;87759;87760	87756			7	
EATEQEIR	0	Unmodified	974.46689	0.46688876	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.2	1					3					2	1	1	11.091	5.5877	2	0.001247	6751	160511_QHF_FH_JSI10i_1	108.74	76.272			0.87848	0.951	4.5323	4	1	Median	NaN	NaN	NaN	0	0	Median	0.8035	0.94131	5.6929	2	1	Median	0.9369	0.92289	NaN	1	0	Median	0.92519	0.99253	NaN	1	0	Median	414950000	224300000	190650000	0	0	0	399870000	218080000	181780000	8788200	3511200	5277000	6296200	2706800	3589400	10521	4498;4343	9962	65109;65110;65111;65112	87761;87762;87763;87764	87763			4	
EATFSNPK	1	Unmodified	892.42905	0.42904669	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			2	1	2	3	14.35	12.501	2	0.0011298	10413	160511_QHF_FH_JSI10i_1	111.82	89.193			1.9495	1.9576	16.496	5	5	Median	2.384	1.9576	NaN	1	1	Median	1.9495	2.3043	NaN	1	1	Median	1.6061	1.5507	NaN	1	1	Median	1.8324	1.9636	16.958	2	2	Median	2857000000	828350000	2028600000	587350000	159640000	427710000	824040000	239280000	584760000	625340000	203260000	422080000	820260000	226170000	594080000	10522	543	9963	65113;65114;65115;65116;65117;65118;65119;65120	87765;87766;87767;87768;87769;87770;87771;87772	87769			8	
EATHSSGFSGSSASVASTSSIK	1	Unmodified	2083.9658	0.96580592	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	30.877	30.253	3	6.4794E-10	25623	160511_QHF_FH_JSI11i_2	88.176	73.021			1.1582	0.84081	19.664	6	2	Linear	1.3661	1.1691	NaN	1	0	Median	0.7947	0.95587	NaN	1	0	Median	1.3698	1.3472	20.995	2	1	Median	1.0374	1.0903	24.355	2	1	Median	154080000	71443000	82640000	20491000	8294900	12196000	25644000	14569000	11075000	46586000	19033000	27553000	61363000	29546000	31817000	10523	429	9964	65121;65122;65123;65124;65125;65126	87773;87774;87775;87776;87777;87778;87779;87780;87781;87782;87783	87777			11	
EATKGFYDK	2	Acetyl (K)	1099.5186	0.51858998	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	35.716	27.004	2	0.00022175	15519	160513_QHF_FH_JSI12Kac_3	105.4	88.011			0.83511	0.94055	20.852	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92405	1.092	NaN	1	0	Median	0.73216	0.73099	NaN	1	0	Median	0.75473	0.81007	NaN	1	0	Median	25955000	15064000	10891000	0	0	0	10003000	5924700	4078300	6394800	3919100	2475800	9557200	5220300	4336900	10524	154	9965	65127;65128;65129	87784;87785;87786;87787;87788;87789	87786	88;89		6	
EATNDDPWGPSGQLMGEIAK	1	Unmodified	2114.9579	0.95788377	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	82.511	81.967	2;3	8.2964E-11	74634	160511_QHF_FH_JSI11i_1	165.34	146.24			0.95715	0.8536	37.526	5	3	Median	1.5648	1.2763	56.887	2	2	Median	0.73823	0.83577	NaN	1	1	Median	0.7809	0.74275	NaN	1	0	Median	0.95715	0.99547	NaN	1	0	Median	93285000	45016000	48269000	28741000	10258000	18483000	23060000	13905000	9154200	21870000	10886000	10984000	19614000	9966200	9648100	10525	2558	9966	65130;65131;65132;65133;65134;65135	87790;87791;87792;87793;87794;87795;87796;87797;87798;87799	87791			10	
EATNPPVIQEEK	1	Unmodified	1353.6776	0.67760981	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	5.53	4			1	2	4				1	4	3	3	32.843	27.108	2	2.0445E-16	23541	160511_QHF_FH_JSI9i_1	185.96	185.96			1.1184	0.99769	20.651	11	1	Plateau	1.1333	0.89396	NaN	1	0	Median	0.65013	0.76285	29.265	4	1	Linear	1.1184	1.0697	18.572	3	0	Plateau	1.0018	1.0649	10.834	3	0	Plateau	4357800000	2163600000	2194200000	1077700000	516340000	561350000	1124200000	594410000	529840000	1056300000	485820000	570440000	1099600000	567010000	532560000	10526	1344	9967	65136;65137;65138;65139;65140;65141;65142;65143;65144;65145;65146	87800;87801;87802;87803;87804;87805;87806;87807;87808;87809;87810;87811;87812;87813;87814;87815;87816;87817;87818;87819;87820;87821;87822;87823;87824;87825	87819			26	
EATNPPVIQEEKPK	2	Unmodified	1578.8253	0.82533668	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	5.21	6	7	1			3	2			3	8	5	3	28.151	25.17	2;3	5.742E-21	22077	160511_QHF_FH_JSI10i_1	179.35	155.5			0.95749	1.0403	31.731	18	7	Median	1.2018	0.97828	58.207	3	2	Median	0.80306	0.95617	25.225	7	4	Median	1.0463	1.0135	28.096	5	1	Median	1.0912	1.2007	9.3867	3	0	Median	7383700000	3413600000	3970100000	427390000	189010000	238380000	3075700000	1767500000	1308200000	3472200000	1258400000	2213700000	408500000	198710000	209800000	10527	1344	9968	65147;65148;65149;65150;65151;65152;65153;65154;65155;65156;65157;65158;65159;65160;65161;65162;65163;65164;65165	87826;87827;87828;87829;87830;87831;87832;87833;87834;87835;87836;87837;87838;87839;87840;87841;87842;87843;87844;87845;87846;87847;87848;87849;87850;87851;87852;87853;87854;87855;87856;87857;87858;87859;87860	87841			35	
EATNPPVIQEEKPK	2	Acetyl (K)	1620.8359	0.83590137	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.9	0.567				2	6	1					2	5	2	50.082	40.77	2;3	0.00076495	18630	160513_QHF_FH_JSI12Kac_2	76.588	64.303			0.3273	0.31479	73.306	7	1	Median	NaN	NaN	NaN	0	0	Median	1.0399	1.2441	3.45	2	0	Median	0.31487	0.30046	11.543	4	1	Median	0.23759	0.24803	NaN	1	0	Median	61921000	45545000	16377000	0	0	0	13188000	7001300	6186400	38963000	29561000	9402300	9770500	8982400	788060	10528	1344	9968	65166;65167;65168;65169;65170;65171;65172;65173;65174	87861;87862;87863;87864;87865;87866;87867;87868;87869;87870	87870	1270		10	
EATPAENVAK	1	Unmodified	1028.5138	0.51383895	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.614	12.484	2	0.010389	10061	160511_QHF_FH_JSI11i_1	57.55	44.561			0.037595	0.03633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.037595	0.03633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	553050000	533240000	19810000	0	0	0	0	0	0	553050000	533240000	19810000	0	0	0	10529	3238	9969	65175	87871	87871			1	
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEK	1	Unmodified	3999.6945	0.69452461	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	100.39	100.29	3	2.462E-05	90932	160511_QHF_FH_JSI10i_1	46.32	44.812			1.2911	1.3113	17.803	3	3	Median	NaN	NaN	NaN	0	0	Median	1.4137	1.6069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2113	1.2157	10.715	2	2	Median	70921000	27126000	43796000	0	0	0	22108000	11903000	10205000	14834000	0	14834000	33979000	15223000	18756000	10530	4619	9970	65176;65177;65178;65179	87872;87873;87874;87875	87875			4	
EATPVVHETEPESGSQPR	0	Unmodified	1948.9126	0.91264814	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			22.094	21.818	3	0.0002527	18946	160511_QHF_FH_JSI10i_1	58.427	47.572			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10531	5646	9971	65180	87876	87876			1	
EATPVVHETEPESGSQPRPAVLSGYFK	1	Unmodified	2911.4352	0.43520128	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							3	3	1		61.6	60.553	3;4	1.0801E-14	50637	160511_QHF_FH_JSI10i_3	96.303	90.42			0.8976	0.9574	13.566	7	1	Median	1.1709	1.0147	7.3941	3	1	Plateau	0.75729	0.8502	13.776	3	0	Median	0.8976	0.82022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	428820000	223110000	205710000	158520000	69942000	88580000	223090000	125830000	97265000	47206000	27338000	19869000	0	0	0	10532	5646	9972	65181;65182;65183;65184;65185;65186;65187	87877;87878;87879;87880;87881;87882;87883;87884;87885;87886;87887;87888;87889;87890;87891	87880			15	
EATPYPALIK	1	Unmodified	1101.607	0.60701105	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5.33	6.13	2						1			1			2	52.43	51.497	2	1.0972E-05	46755	160511_QHF_FH_JSI12i_1	114.5	114.5			0.92905	0.8669	3.8093	2	1	Median	1.0948	0.89057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78836	0.84386	NaN	1	1	Median	570300000	308750000	261550000	299930000	147650000	152280000	0	0	0	0	0	0	270370000	161100000	109270000	10533	1060	9973	65188;65189;65190	87892;87893;87894;87895	87892			4	
EATQILSVPK	1	Unmodified	1084.6128	0.61282471	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	49.982	45.577	2	1.4717E-09	41168	160511_QHF_FH_JSI12i_1	134.05	110.28			1.01	1.0013	8.506	7	0	Median	1.1921	0.96999	NaN	1	0	Median	0.8558	1.023	3.0199	2	0	Median	1.0032	0.97229	4.0349	2	0	Median	1.0632	1.1477	8.4922	2	0	Median	1144500000	532160000	612380000	302180000	115850000	186330000	292540000	149500000	143040000	271100000	137920000	133180000	278720000	128900000	149830000	10534	1526	9974	65191;65192;65193;65194;65195;65196;65197;65198	87896;87897;87898;87899;87900;87901;87902;87903;87904;87905;87906;87907;87908;87909;87910;87911;87912	87900			17	
EATSSTSNFSSLSSK	1	Unmodified	1531.7002	0.70019575	5210	Q9P2D1	CHD7	Chromodomain-helicase-DNA-binding protein 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.247	29.679	2	0.00083446	26643	160511_QHF_FH_JSI12i_1	65.295	55.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10535	5210	9975	65199	87913	87913			1	
EATTDFTVDSRPLTQVGGDHIK	1	Unmodified	2386.1765	0.1764674	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	1	4	4	57.192	56.633	3;4	4.2877E-29	48661	160511_QHF_FH_JSI12i_3	178.77	163.68			0.95565	0.94864	6.0398	10	2	Median	1.1463	0.9896	NaN	1	0	Median	0.77396	0.94737	NaN	1	0	Median	0.99794	0.93916	7.6722	4	2	Median	0.91488	0.96716	6.6853	4	0	Median	2972200000	1502300000	1469900000	79438000	36663000	42775000	114680000	61467000	53215000	1757000000	861960000	895060000	1021100000	542250000	478830000	10536	512	9976	65200;65201;65202;65203;65204;65205;65206;65207;65208;65209	87914;87915;87916;87917;87918;87919;87920;87921;87922;87923;87924;87925;87926;87927;87928;87929;87930;87931;87932;87933	87931			20	
EATTEFSVDAR	0	Unmodified	1224.5622	0.5622457	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.27	4	2	1			3				1	2	5	2	36.71	32.536	2	1.2267E-37	28982	160511_QHF_FH_JSI10i_1	198.72	154.37			0.95056	0.99753	4.3008	7	1	Median	1.208	0.99934	NaN	1	0	Median	0.84043	0.99976	0.31607	2	1	Median	0.96702	0.94595	3.9972	2	0	Median	0.92428	0.97294	7.6155	2	0	Median	2549500000	1238300000	1311200000	558090000	230050000	328040000	724080000	402790000	321280000	656170000	323560000	332610000	611180000	281860000	329310000	10537	1192	9977	65210;65211;65212;65213;65214;65215;65216;65217;65218;65219	87934;87935;87936;87937;87938;87939;87940;87941;87942;87943;87944;87945;87946;87947;87948;87949;87950	87943			17	
EATTNAPFR	0	Unmodified	1005.488	0.48795855	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		18.958	18.299	2	4.7106E-06	15440	160511_QHF_FH_JSI9i_2	118.33	85.442			0.89099	0.98334	3.8018	3	0	Median	1.1686	0.99051	NaN	1	0	Median	0.8077	0.98334	NaN	1	0	Median	0.89099	0.9243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	256000000	129640000	126360000	91260000	41347000	49913000	72837000	39786000	33051000	91904000	48511000	43393000	0	0	0	10538	1363	9978	65220;65221;65222	87951;87952;87953;87954;87955	87952			5	
EATTTLHMLTLLK	1	Unmodified	1470.8116	0.81160087	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		6							8	3	4	4	3	77.012	72.063	2;3	1.2629E-25	37529	160513_QHF_FH_JSI9Kac_6	166.38	148.25			1.1029	1.0158	19.721	14	4	Median	1.1576	0.99761	12.372	3	1	Median	1.1444	1.3341	31.1	4	2	Median	1.1933	1.1473	8.4421	4	1	Linear	0.86568	0.91307	19.715	3	0	Median	953140000	492830000	460310000	185550000	91866000	93685000	358210000	167770000	190440000	325690000	192920000	132770000	83691000	40273000	43418000	10539	2904	9979	65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236	87956;87957;87958;87959;87960;87961;87962;87963;87964;87965;87966;87967;87968;87969;87970;87971;87972	87965			17	
EATVKPFAIDIFPVTNK	2	Unmodified	1889.0299	0.02985015	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	89.938	89.85	3	0.0011922	77863	160511_QHF_FH_JSI12i_3	61.102	50.286			1.1216	1.1493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1216	1.1493	NaN	1	1	Median	75150000	34301000	40849000	0	0	0	0	0	0	0	0	0	75150000	34301000	40849000	10540	3594	9980	65237	87973	87973			1	
EATWTMSNITAGR	0	Unmodified	1436.6718	0.67181293	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.25	6.26		2					1	1			1	2	1	59.325	55.064	2	5.7763E-05	47112	160511_QHF_FH_JSI12i_2	108.35	104.82			0.97906	1.042	9.6752	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97544	0.96185	11.318	2	0	Median	0.93983	1.0568	NaN	1	0	Median	439340000	239330000	200010000	0	0	0	0	0	0	280700000	160880000	119820000	158640000	78453000	80191000	10541	1766	9981	65238;65239;65240;65241	87974;87975;87976	87974			3	
EATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSK	1	Unmodified	3866.0149	0.014892148	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.015	92.294	4	1.2811E-11	53848	160513_QHF_FH_JSI10Kac_6	80.652	71.814			1.0118	1.1866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0118	1.1866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	240230000	136770000	103460000	0	0	0	240230000	136770000	103460000	0	0	0	0	0	0	10542	1766	9982	65242	87977	87977			1	
EATWVVDVK	1	Unmodified	1045.5444	0.5444108	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	1	2	2	54.791	52.116	2	3.5315E-05	47307	160511_QHF_FH_JSI12i_1	100.02	79.497			2.1787	1.8479	47.426	5	3	Median	2.1787	1.8479	NaN	1	1	Median	0.83832	0.97734	NaN	1	0	Median	2.3488	2.3244	NaN	1	1	Median	1.5852	1.6789	70.341	2	1	Median	571020000	263200000	307820000	65941000	28772000	37170000	161640000	78565000	83073000	135440000	56593000	78847000	208000000	99270000	108730000	10543	1207	9983	65243;65244;65245;65246;65247;65248	87978;87979;87980;87981;87982;87983;87984;87985	87980			8	
EAVAAEVK	1	Unmodified	815.43888	0.43888309	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.241	12.818	2	0.0027508	10308	160511_QHF_FH_JSI11i_1	77.732	23.575			0.81618	0.82586	14.572	4	0	Median	1.3411	1.102	NaN	1	0	Median	0.6864	0.8188	NaN	1	0	Median	0.84141	0.8243	NaN	1	0	Median	0.79171	0.82743	NaN	1	0	Median	755390000	375740000	379650000	187050000	69405000	117650000	184140000	103630000	80509000	188060000	98153000	89910000	196130000	104550000	91584000	10544	2116	9984	65249;65250;65251;65252	87986;87987;87988;87989;87990	87986			5	
EAVAAEVKNEEEDQKEDEEDQNEEK	3	Unmodified	2933.2534	0.25339291	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	2				By MS/MS	1	0	1												1	28.377	27.82	3	9.9845E-08	24905	160511_QHF_FH_JSI12i_1	75.112	68.081			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16371000	0	16371000	0	0	0	0	0	0	0	0	0	16371000	0	16371000	10545	2116	9985	65253	87991	87991			1	
EAVAMESYAK	1	Oxidation (M)	1113.5012	0.50122535	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.91	5				1	4				3	2	2	3	21.716	17.834	2	2.4703E-08	24947	160511_QHF_FH_JSI9i_1	122.28	91.207			0.91045	1.0092	23.615	8	3	Median	0.6571	0.54769	NaN	1	1	Median	0.93592	1.0868	3.0137	2	1	Median	1.0069	0.99706	15.581	2	0	Median	0.89694	0.97844	11.315	3	1	Median	694500000	351470000	343030000	117940000	59524000	58415000	162150000	84866000	77279000	229380000	115440000	113940000	185030000	91634000	93399000	10546	2090	9986	65254;65255;65256;65257;65258;65259;65260;65261;65262;65263	87992;87993;87994;87995;87996;87997;87998;87999;88000;88001	87998		1748	10	
EAVAMESYAK	1	Unmodified	1097.5063	0.50631073	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	6.2	4	1	1			3	1		1	4	4	1	2	30.934	25.973	2	6.2473E-11	25665	160511_QHF_FH_JSI12i_1	145.72	99.708			1.1089	1.1362	62.343	10	4	Median	1.9876	1.6303	46.636	3	1	Plateau	0.96196	1.1362	80.017	4	2	Median	3.4731	3.385	NaN	1	1	Median	1.1089	1.1958	20.067	2	0	Median	3446800000	1360900000	2085800000	882220000	351020000	531200000	891550000	362480000	529070000	754350000	205490000	548860000	918650000	441940000	476710000	10547	2090	9986	65264;65265;65266;65267;65268;65269;65270;65271;65272;65273;65274	88002;88003;88004;88005;88006;88007;88008;88009;88010;88011;88012;88013;88014;88015;88016;88017;88018	88003			17	
EAVAPVQEESDLEK	1	Unmodified	1542.7413	0.74133228	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	43.167	39.647	2	1.1887E-21	34969	160511_QHF_FH_JSI9i_1	178.71	153.86			1.0682	1.0168	7.5633	6	0	Median	1.1698	0.95306	NaN	1	0	Median	0.81612	0.97099	NaN	1	0	Median	1.0779	1.0436	2.9873	2	0	Median	1.0125	1.0907	10.631	2	0	Median	1537400000	799690000	737670000	307200000	150390000	156810000	427980000	233720000	194260000	397730000	191450000	206280000	404450000	224130000	180330000	10548	2400	9987	65275;65276;65277;65278;65279;65280	88019;88020;88021;88022;88023;88024;88025;88026;88027;88028;88029;88030	88029			12	
EAVAQYQMIIK	1	Unmodified	1292.6799	0.67985842	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.605	56.211	2	0.00027696	50756	160511_QHF_FH_JSI10i_1	90.263	69.959			0.75499	0.87858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75499	0.87858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40167000	20079000	20088000	0	0	0	40167000	20079000	20088000	0	0	0	0	0	0	10549	3117	9988	65281	88031	88031			1	
EAVCIVLSDDTCSDEK	1	Unmodified	1839.7866	0.78664427	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.79	54.127	2	1.4902E-11	49215	160511_QHF_FH_JSI12i_1	112.51	96.617			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10550	1846	9989	65282	88032	88032			1	
EAVEAAVK	1	Unmodified	815.43888	0.43888309	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	13.889	13.447	2	0.0027493	10777	160511_QHF_FH_JSI9i_1	85.212	29.536			0.93768	1.0059	8.8364	4	2	Median	1.3	1.0747	NaN	1	1	Median	0.84798	1.0052	NaN	1	1	Median	1.0369	1.0066	NaN	1	0	Median	0.83355	0.8716	NaN	1	0	Median	1906200000	871650000	1034600000	487020000	192800000	294220000	479580000	262700000	216870000	477540000	189680000	287860000	462090000	226470000	235630000	10551	1495	9990	65283;65284;65285;65286;65287;65288	88033;88034;88035;88036;88037;88038;88039;88040	88039			8	
EAVEAIQNSTSIK	1	Unmodified	1388.7147	0.7147236	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	5.81	5				2	3				2	4	2	2	40.787	36.902	2	3.4445E-10	32868	160511_QHF_FH_JSI10i_1	174.4	159.14			0.88028	0.97427	25.139	8	2	Median	0.9592	0.78609	59.069	2	2	Median	0.7493	0.89026	11.411	2	0	Median	0.94429	0.94142	14.013	2	0	Median	0.92674	0.99382	1.4667	2	0	Median	859410000	450720000	408680000	247800000	127130000	120670000	188280000	97278000	91004000	185920000	90591000	95325000	237400000	135720000	101680000	10552	2457	9991	65289;65290;65291;65292;65293;65294;65295;65296;65297;65298	88041;88042;88043;88044;88045;88046;88047;88048;88049;88050;88051;88052;88053;88054;88055;88056	88048			16	
EAVEENGVITDK	1	Unmodified	1302.6303	0.63032527	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	6				2					1	1	3	3	30.21	26.939	2	4.7172E-29	24192	160511_QHF_FH_JSI12i_1	169.52	117.04			0.87606	0.93224	27.48	6	1	Median	0.83013	0.67651	NaN	1	0	Median	0.73239	0.86327	NaN	1	0	Median	1.4313	1.3653	0.19783	2	1	Median	0.87606	0.93224	0.19298	2	0	Median	396480000	204940000	191540000	83773000	48318000	35456000	134260000	77978000	56280000	101600000	47973000	53624000	76852000	30671000	46181000	10553	4154	9992	65299;65300;65301;65302;65303;65304;65305;65306	88057;88058;88059;88060;88061;88062;88063	88060			7	
EAVEHFLEALNMQR	0	Unmodified	1685.8195	0.8195398	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			80.111	79.406	3	0.0083882	70778	160511_QHF_FH_JSI10i_2	34.326	29.524			0.42248	0.54205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42248	0.54205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12486000	8402900	4082700	0	0	0	12486000	8402900	4082700	0	0	0	0	0	0	10554	1708	9993	65307	88064;88065	88065			2	
EAVELPLTHFELYK	1	Unmodified	1687.8821	0.88212328	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								1	2	3	3	87.743	87.058	2;3	1.5358E-07	77416	160511_QHF_FH_JSI10i_2	137.8	127.14			0.89333	0.95902	10.255	9	4	Median	1.2229	1.0588	NaN	1	0	Median	0.74625	0.92069	14.509	2	0	Median	0.90912	0.9065	7.7234	3	2	Median	0.89333	0.95902	10.661	3	2	Median	776940000	382890000	394050000	106560000	41831000	64731000	192710000	102410000	90296000	274520000	130490000	144020000	203150000	108150000	94999000	10555	1567	9994	65308;65309;65310;65311;65312;65313;65314;65315;65316	88066;88067;88068;88069;88070;88071;88072;88073;88074;88075;88076;88077;88078;88079;88080;88081;88082;88083;88084;88085	88083			20	
EAVEQFESQGVDLSNIVK	1	Unmodified	1990.9848	0.98475045	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		81.717	81.561	2	2.2748E-23	74284	160511_QHF_FH_JSI11i_1	133.47	102.6			0.88583	1.0079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88583	1.0079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21150000	15194000	5955900	0	0	0	21150000	15194000	5955900	0	0	0	0	0	0	10556	3079	9995	65317;65318;65319	88086;88087;88088	88086			3	
EAVGDLLDAFK	1	Unmodified	1176.6027	0.60265396	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.943	4	1	4							3	3	1	2	89.979	89.191	2	4.3487E-23	81226	160511_QHF_FH_JSI10i_1	173.32	109.84			0.94785	1.0521	20.016	9	4	Linear	1.196	1.0173	6.9142	3	2	Median	0.88979	1.0521	24.655	3	2	Plateau	0.98333	0.96962	NaN	1	0	Median	1.0036	1.0874	6.4899	2	0	Median	1022900000	524260000	498620000	152390000	76650000	75736000	314260000	170750000	143510000	233030000	114520000	118510000	323210000	162350000	160860000	10557	2217	9996	65320;65321;65322;65323;65324;65325;65326;65327;65328	88089;88090;88091;88092;88093;88094;88095;88096;88097;88098;88099;88100;88101;88102;88103;88104;88105	88099			17	
EAVGGLQTVR	0	Unmodified	1028.5615	0.56145784	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		26.709	26.526	2	0.0041976	23907	160511_QHF_FH_JSI11i_1	57.96	12.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10558	2212	9997	65329;65330	88106;88107	88107			2	
EAVILPIK	1	Unmodified	881.5586	0.5586043	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	59.893	57.09	2	0.0014792	51296	160511_QHF_FH_JSI10i_1	88.942	61.418			0.95665	1.0031	5.0512	10	0	Median	1.2175	1.0346	3.6498	2	0	Median	0.83275	0.998	3.1213	3	0	Median	1.0197	0.97726	8.1566	3	0	Median	0.94289	0.99689	6.5912	2	0	Median	754710000	398080000	356630000	146570000	75165000	71400000	185160000	104760000	80394000	234110000	124440000	109670000	188880000	93714000	95164000	10559	507;5432	9998	65331;65332;65333;65334;65335;65336;65337;65338;65339;65340	88108;88109;88110;88111;88112;88113;88114;88115;88116;88117;88118;88119;88120;88121	88114			14	
EAVILYAQPSER	0	Unmodified	1374.7143	0.71432967	4517	Q9BXI9	C1QTNF6	Complement C1q tumor necrosis factor-related protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.02	2					1	3			1	3	1	1	52.895	47.465	2	6.5471E-06	25869	160513_QHF_FH_JSI10Kac_4	103.22	68.688			0.78195	0.91004	7.4607	4	2	Median	1.2132	0.99237	NaN	1	1	Median	0.68366	0.82862	5.604	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162850000	105970000	56875000	74268000	50512000	23756000	88579000	55459000	33120000	0	0	0	0	0	0	10560	4517	9999	65341;65342;65343;65344;65345;65346	88122;88123;88124;88125;88126;88127;88128;88129	88123			8	
EAVKHIGYDDSSK	2	Acetyl (K)	1489.7049	0.7048872	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							4				2		2	34.648	25.246	2;3	0.00052839	14960	160513_QHF_FH_JSI10Kac_4	70.47	50.631			0.8887	1.0086	24.33	4	0	Median	NaN	NaN	NaN	0	0	Median	0.93152	1.1011	17.513	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80144	0.85373	28.665	2	0	Median	37196000	18726000	18470000	0	0	0	18461000	8536800	9924200	0	0	0	18735000	10189000	8545900	10561	1370	10000	65347;65348;65349;65350	88130;88131;88132;88133;88134;88135	88132	1308		6	
EAVLAEK	1	Unmodified	758.41742	0.41741937	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.57	0.495	3	4								2	2	2	1	14.316	13.779	2	0.029209	10872	160511_QHF_FH_JSI9i_1	52.716	27.266			0.97231	0.9105	17.944	7	0	Median	1.102	0.91635	0.90582	2	0	Median	0.90167	1.0874	26.585	2	0	Median	0.84899	0.84295	16.583	2	0	Median	0.70285	0.78872	NaN	1	0	Median	2901800000	1362800000	1539000000	827100000	297480000	529610000	1057200000	517600000	539560000	901100000	481400000	419700000	116430000	66321000	50106000	10562	2795	10001	65351;65352;65353;65354;65355;65356;65357	88136;88137;88138	88138			3	
EAVLIDPVLETAPR	0	Unmodified	1521.8403	0.84025847	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.535	78.06	2	1.6027E-06	71090	160511_QHF_FH_JSI11i_1	132.56	128.68			0.95324	0.95665	3.4564	4	0	Median	1.1139	0.90902	NaN	1	0	Median	0.83203	0.96852	NaN	1	0	Median	0.97363	0.94492	NaN	1	0	Median	0.93328	0.98412	NaN	1	0	Median	418840000	211520000	207320000	102490000	48308000	54181000	115060000	59540000	55521000	96674000	51145000	45529000	104610000	52523000	52090000	10563	706	10002	65358;65359;65360;65361	88139;88140;88141;88142;88143;88144;88145;88146	88140			8	
EAVLKDHTK	2	Acetyl (K)	1081.5768	0.57677356	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		20.309	12.675	3	0.0431	8914	160513_QHF_FH_JSI11Kac_4	32.218	15.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10564	2557	10003	65362	88147	88147			1	
EAVLLLK	1	Unmodified	784.50584	0.50584045	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.46	4	4	2				4	4	1	4	5	5	5	55.724	50.141	2	0.0035003	45633	160511_QHF_FH_JSI12i_1	104.11	51.428			0.99137	1.0265	30.577	19	2	Median	1.2655	1.0475	8.986	4	0	Median	0.87974	1.0265	23.069	5	0	Median	1.0778	1.0494	54.362	5	2	Median	0.82363	0.90925	18.755	5	0	Median	8962800000	4510800000	4452000000	1806000000	787740000	1018200000	2246600000	1171300000	1075200000	2822900000	1474600000	1348300000	2087400000	1077200000	1010200000	10565	1457	10004	65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373;65374;65375;65376;65377;65378;65379;65380;65381	88148;88149;88150;88151;88152;88153;88154;88155;88156;88157;88158;88159;88160;88161;88162;88163;88164;88165;88166;88167;88168;88169;88170;88171;88172;88173;88174;88175;88176;88177;88178;88179;88180;88181;88182;88183;88184;88185;88186	88158			39	
EAVLLLKK	2	Acetyl (K)	954.61137	0.61136815	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	2	1	68.121	57.301	2	0.014456	31722	160513_QHF_FH_JSI11Kac_4	77.282	22.733			3.0783	3.4567	267.08	3	2	Median	NaN	NaN	NaN	0	0	Median	3.0783	3.4567	NaN	1	1	Median	3.7188	3.6486	377.68	2	1	Median	NaN	NaN	NaN	0	0	Median	28454000	16703000	11751000	0	0	0	1210500	111880	1098600	22240000	11588000	10652000	5002900	5002900	0	10566	1457	10005	65382;65383;65384;65385	88187;88188;88189;88190	88187	1437		4	
EAVLLLKK	2	Unmodified	912.6008	0.60080346	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	36.203	36.057	2	0.045087	30729	160511_QHF_FH_JSI12i_3	53.554	30.535			0.42295	0.42906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42295	0.42906	NaN	1	1	Median	57131000	32917000	24214000	0	0	0	0	0	0	0	0	0	57131000	32917000	24214000	10567	1457	10005	65386	88191	88191			1	
EAVLLNLK	1	Unmodified	898.54877	0.54876789	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	55.443	54.601	2	0.0012584	47263	160511_QHF_FH_JSI11i_2	91.906	45.48			0.8867	0.97708	23.052	5	1	Median	1.2052	1.0144	NaN	1	0	Median	1.0101	1.2	37.46	2	1	Median	0.86756	0.88245	NaN	1	0	Median	0.8867	0.97708	NaN	1	0	Median	313740000	170360000	143380000	50256000	27815000	22441000	89742000	47618000	42124000	89698000	46830000	42868000	84042000	48094000	35948000	10568	4811	10006	65387;65388;65389;65390;65391	88192;88193;88194;88195	88195			2	
EAVLNAYR	0	Unmodified	934.48723	0.48723027	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	1	2	1	27.192	26.386	2	0.00019613	23175	160511_QHF_FH_JSI11i_1	120.92	93.397			1.0385	1.128	57.771	6	2	Median	2.0811	1.8038	114.6	2	1	Median	0.92851	1.141	NaN	1	1	Median	1.0385	1.0273	11.597	2	0	Median	1.2047	1.2929	NaN	1	0	Median	429710000	197540000	232170000	94960000	34024000	60936000	77126000	42643000	34482000	175650000	77071000	98576000	81973000	43801000	38172000	10569	2605	10007	65392;65393;65394;65395;65396;65397	88196;88197;88198;88199;88200;88201	88196			6	
EAVLNGLVATEVLMWFYVGEIIGK	1	Unmodified	2650.408	0.40804724	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.2	1.57				1			2	2	1		2	3	1	105.69	96.61	3	5.5905E-22	59282	160513_QHF_FH_JSI10Kac_6	124.81	110.93			0.93351	0.89784	40.632	6	0	Median	NaN	NaN	NaN	0	0	Median	0.9484	1.1198	37.053	2	0	Median	0.96268	0.9335	28.828	3	0	Median	0.45087	0.49211	NaN	1	0	Median	246090000	150300000	95786000	0	0	0	222240000	138490000	83748000	22410000	10902000	11507000	1440800	909980	530830	10570	592	10008	65398;65399;65400;65401;65402;65403	88202;88203;88204;88205;88206;88207;88208	88208			7	
EAVNLQQDAFVVIGR	0	Unmodified	1657.8788	0.87876924	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	81.313	81.157	2;3	1.1602E-06	73706	160511_QHF_FH_JSI10i_1	143.98	100.36			0.75307	0.88615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75307	0.88615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46761000	28020000	18741000	0	0	0	46761000	28020000	18741000	0	0	0	0	0	0	10571	690	10009	65404;65405	88209;88210	88210			2	
EAVQCVQELASPSLLFIFVR	0	Unmodified	2305.214	0.21403888	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			98.147	92.427	2;3	5.5498E-105	53991	160513_QHF_FH_JSI10Kac_6	244.56	206.26			1.1777	1.3846	42.5	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1777	1.3846	42.5	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	315680000	129660000	186020000	0	0	0	315680000	129660000	186020000	0	0	0	0	0	0	10572	2217	10010	65406;65407;65408	88211;88212;88213	88211			3	
EAVQLVNTR	0	Unmodified	1028.5615	0.56145784	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				28.094	27.059	2	0.016191	23349	160511_QHF_FH_JSI9i_2	53.756	21.436			1.1769	1.0337	NaN	1	1	Median	1.1769	1.0337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12666000	5276000	7389600	12666000	5276000	7389600	0	0	0	0	0	0	0	0	0	10573	1837	10011	65409	88214	88214			1	
EAVQTAAK	1	Unmodified	816.43413	0.43413207	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	6.2504	5.9221	2	0.0018537	3631	160511_QHF_FH_JSI11i_1	84.498	27.217			0.85836	0.87896	14.33	5	0	Median	1.2631	1.0483	NaN	1	0	Median	0.72058	0.83857	NaN	1	0	Median	1.1041	1.0872	NaN	1	0	Median	0.80897	0.8289	8.293	2	0	Median	654610000	350100000	304510000	119280000	60105000	59177000	121610000	75885000	45724000	114810000	47339000	67467000	298920000	166770000	132140000	10574	5393	10012	65410;65411;65412;65413;65414	88215;88216;88217;88218;88219;88220	88215			6	
EAVSGPMAGKPFRPQSLSK	2	Acetyl (K)	2028.0462	0.046245271	3188	Q6ZSR9		Uncharacterized protein FLJ45252	yes	yes	1	0	0	2				By MS/MS	16	0									1				1	65.637	55.763	3	0.013929	29202	160513_QHF_FH_JSI12Kac_6	60.062	27.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2154000	2154000	0	0	0	0	0	0	0	0	0	0	2154000	2154000	0	10575	3188	10013	65415	88221	88221	2791		1	
EAVSSAFFSLLQTLSTQFK	1	Unmodified	2103.0888	0.088821592	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.77	6.74		3	3						7	4	2	3	4	102.38	97.635	2;3	0	53130	160513_QHF_FH_JSI9Kac_6	470.68	423.81			1.1406	1.1377	39.663	13	9	Median	1.3051	1.1042	29.242	4	3	Median	1.259	1.5021	79.492	2	1	Median	1.1406	1.0951	59.226	3	3	Median	1.0896	1.1444	21.023	4	2	Median	2124700000	953440000	1171200000	872750000	344280000	528470000	305570000	160290000	145270000	79484000	40222000	39262000	866880000	408640000	458240000	10576	4361	10014	65416;65417;65418;65419;65420;65421;65422;65423;65424;65425;65426;65427;65428	88222;88223;88224;88225;88226;88227;88228;88229;88230;88231;88232;88233;88234;88235;88236;88237	88229			16	
EAVSSSHGPSDPTDRAEVEK	1	Unmodified	2096.9611	0.9610549	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	1	By MS/MS				2	0		2								2				18.554	17.697	3;4	0.0009682	14855	160511_QHF_FH_JSI9i_2	49.224	33.632			0.89174	0.75353	NaN	1	1	Median	0.89174	0.75353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22130000	12050000	10080000	22130000	12050000	10080000	0	0	0	0	0	0	0	0	0	10577	1822	10015	65429;65430	88238;88239	88239			2	
EAVTEILGIEPDREK	1	Unmodified	1697.8836	0.88357984	2688	Q15631	TSN	Translin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							3	2	3	4	66.653	65.813	2;3	1.0984E-20	57340	160511_QHF_FH_JSI11i_2	141.73	116.87			0.93157	0.95687	12.035	10	2	Median	0.97459	0.81259	4.113	3	2	Plateau	0.72189	0.8739	16.001	2	0	Median	0.96987	0.98924	1.6824	2	0	Median	0.90557	1.013	9.0721	3	0	Median	1406900000	782330000	624540000	380180000	185390000	194790000	272340000	173000000	99346000	490870000	281380000	209490000	263480000	142560000	120920000	10578	2688	10016	65431;65432;65433;65434;65435;65436;65437;65438;65439;65440;65441;65442	88240;88241;88242;88243;88244;88245;88246;88247;88248;88249;88250;88251;88252;88253;88254;88255;88256;88257;88258;88259	88252			20	
EAVTFDQANPTQILGK	1	Unmodified	1730.8839	0.88391419	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.373	72.87	2	3.9611E-98	66332	160511_QHF_FH_JSI11i_1	264.72	243.47			0.7502	0.96898	8.1679	4	0	Linear	1.2468	1.0343	NaN	1	0	Median	0.73502	0.85352	NaN	1	0	Median	0.96785	0.95224	NaN	1	0	Median	0.93405	0.98602	NaN	1	0	Median	798690000	443000000	355690000	192180000	101350000	90835000	208830000	136020000	72810000	193150000	97398000	95748000	204530000	108240000	96295000	10579	5495	10017	65443;65444;65445;65446	88260;88261;88262;88263;88264;88265;88266;88267;88268	88262			9	
EAVTFLR	0	Unmodified	834.45995	0.45995289	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	41.632	40.668	2	0.017395	35857	160511_QHF_FH_JSI10i_2	61.561	33.307			1.0417	1.1632	36.187	4	1	Median	0.90142	0.8037	NaN	1	1	Median	1.1056	1.3709	NaN	1	0	Median	0.98147	0.98695	NaN	1	0	Median	1.6524	1.827	NaN	1	0	Median	333410000	157050000	176360000	48282000	25775000	22507000	99200000	45450000	53750000	108500000	54572000	53925000	77433000	31255000	46178000	10580	1465	10018	65447;65448;65449;65450	88269;88270;88271	88271			3	
EAVTFLRK	1	Unmodified	962.55492	0.5549159	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		30.156	29.124	2	0.0033998	24295	160511_QHF_FH_JSI10i_3	73.26	41.971			0.76683	0.79241	69.163	4	3	Median	1.1312	0.92347	101.58	2	2	Median	1.0607	1.2252	NaN	1	0	Median	0.55437	0.5125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	324680000	189660000	135020000	170690000	88826000	81866000	66183000	39864000	26319000	87805000	60974000	26831000	0	0	0	10581	1465	10019	65451;65452;65453;65454	88272;88273;88274;88275;88276	88273			5	
EAVTHIGR	0	Unmodified	881.47191	0.47191456	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.87	6.12		9	2						4	2	3	5	5	11.139	8.5486	2;3	6.6295E-05	7068	160511_QHF_FH_JSI12i_3	133.81	98.989			0.92285	0.93304	16	13	2	Median	1.2104	1.0353	12.484	2	0	Median	0.74929	0.93085	4.9706	3	0	Plateau	1.0021	0.98545	9.8956	4	1	Median	0.77317	0.86943	24.822	4	1	Median	2318600000	1214800000	1103800000	184640000	95074000	89569000	561520000	316780000	244740000	799210000	395090000	404120000	773180000	407860000	365330000	10582	853	10020	65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467;65468;65469	88277;88278;88279;88280;88281;88282;88283;88284;88285;88286;88287;88288;88289;88290;88291	88289			15	
EAVTILSQQR	0	Unmodified	1143.6248	0.62478638	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	2	3	1	36.153	35.58	2	5.1195E-05	20982	160513_QHF_FH_JSI11Kac_4	87.308	46.956			0.23653	0.25344	63.966	5	5	Median	0.23285	0.19511	NaN	1	1	Median	0.23653	0.28439	NaN	1	1	Median	0.46288	0.45144	104.49	2	2	Median	0.24707	0.25344	NaN	1	1	Median	472060000	366590000	105470000	63733000	51084000	12650000	126480000	101890000	24589000	183760000	134710000	49049000	98080000	78896000	19185000	10583	4870	10021	65470;65471;65472;65473;65474;65475;65476	88292;88293;88294;88295;88296;88297;88298	88295			7	
EAVTTIAAYWHGTQAR	0	Unmodified	1773.8798	0.87983187	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	3	2	1	64.145	59.022	3	1.702E-09	31199	160513_QHF_FH_JSI9Kac_6	108.34	98.415			0.81042	0.91233	17.113	7	2	Median	1.1012	0.94427	NaN	1	0	Median	0.79059	0.91233	25.04	3	2	Median	0.89705	0.86133	18.19	2	0	Median	0.79968	0.82864	NaN	1	0	Median	281980000	150830000	131150000	27185000	9765100	17420000	140890000	76318000	64574000	74721000	41171000	33550000	39183000	23574000	15608000	10584	376	10022	65477;65478;65479;65480;65481;65482;65483	88299;88300;88301;88302;88303;88304;88305;88306;88307;88308	88304			10	
EAVTTLIASGVSIK	1	Unmodified	1387.7922	0.79224564	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.546	75.374	2	0.010211	68304	160511_QHF_FH_JSI10i_1	77.124	57.809			0.94744	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94744	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16527000	10064000	6462900	0	0	0	16527000	10064000	6462900	0	0	0	0	0	0	10585	2142	10023	65484	88309	88309			0	
EAVTTLK	1	Unmodified	760.43307	0.43306943	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.5	6.5	1						1					1	1	18.378	14.332	2	0.032894	12514	160511_QHF_FH_JSI12i_1	52.403	9.2792			0.53541	0.54862	53.203	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80736	0.7992	NaN	1	1	Median	0.35506	0.37661	NaN	1	1	Median	2570200000	1992100000	578160000	0	0	0	0	0	0	26517000	18451000	8066600	2543700000	1973600000	570090000	10586	1544	10024	65485;65486	88310;88311	88310			2	
EAVVNTQELLDLLVK	1	Unmodified	1682.9455	0.94545182	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	102.14	102.05	2	1.1324E-159	89933	160511_QHF_FH_JSI9i_2	303.51	273.77			0.94152	0.97575	17.706	6	0	Median	1.1021	0.96763	NaN	1	0	Median	0.72633	0.88758	14.344	2	0	Median	1.1653	1.1573	25.075	2	0	Median	0.92637	1.0429	NaN	1	0	Median	779770000	398690000	381080000	131870000	62079000	69792000	227470000	125840000	101630000	263730000	129290000	134440000	156700000	81477000	75219000	10587	3101	10025	65487;65488;65489;65490;65491;65492	88312;88313;88314;88315;88316;88317;88318;88319;88320	88316			7	
EAVVPIMAK	1	Unmodified	956.53649	0.53648865	5424	Q9UMR5	PPT2	Lysosomal thioesterase PPT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			48.136	47.312	2	0.0028229	42506	160511_QHF_FH_JSI10i_1	72.789	52.507			0.98192	0.97063	8.943	2	2	Median	1.2548	1.034	NaN	1	1	Median	0.76836	0.91115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127610000	63832000	63776000	53371000	24809000	28561000	74238000	39022000	35215000	0	0	0	0	0	0	10588	5424	10026	65493;65494	88321;88322;88323	88321			3	
EAVVQEPER	0	Unmodified	1055.5247	0.52473799	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	18.892	15.646	2	0.00042921	13579	160511_QHF_FH_JSI12i_1	90.64	65.697			0.87438	0.71816	38.367	5	1	Median	0.87438	0.71816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67702	0.65149	64.696	2	0	Median	0.69202	0.72829	39.552	2	1	Median	209080000	123560000	85519000	80625000	45152000	35473000	0	0	0	58950000	37682000	21268000	69503000	40726000	28777000	10589	4096	10027	65495;65496;65497;65498;65499	88324;88325;88326;88327;88328	88325			5	
EAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAK	1	Unmodified	3816.0397	0.039650336	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.34	95.621	4	4.2066E-22	56471	160513_QHF_FH_JSI10Kac_6	131.78	122.64			0.92578	1.1027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92578	1.1027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77297000	49213000	28085000	0	0	0	77297000	49213000	28085000	0	0	0	0	0	0	10590	147	10028	65500	88329	88329			1	
EAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDK	1	Unmodified	3888.0608	0.060779709	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.84	97.12	4	1.3311E-07	57485	160513_QHF_FH_JSI10Kac_6	64.318	55.252			0.86656	1.0403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86656	1.0403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95567000	57144000	38423000	0	0	0	95567000	57144000	38423000	0	0	0	0	0	0	10591	158	10029	65501	88330	88330			1	
EAWASKDATYTSAR	1	Acetyl (K)	1597.7372	0.73724996	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	50.696	40.156	2	0.0064249	23539	160513_QHF_FH_JSI11Kac_4	68.069	48.307			2.841	2.9671	192.78	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11.566	11.597	NaN	1	1	Median	0.69785	0.75914	NaN	1	0	Median	5664700	2160200	3504500	0	0	0	0	0	0	3819900	1130200	2689700	1844900	1030100	814790	10592	1411	10030	65502;65503	88331;88332	88331	1368		2	
EAWEEEQEVAELLK	1	Unmodified	1701.8097	0.8097462	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		88.884	88.653	2	0.00032299	80467	160511_QHF_FH_JSI10i_1	101.72	71.912			1.2817	1.3506	37.3	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90859	1.0375	NaN	1	1	Median	1.808	1.7582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109870000	50358000	59509000	0	0	0	35530000	15522000	20008000	74337000	34836000	39501000	0	0	0	10593	5330	10031	65504;65505	88333;88334	88334			2	
EAWEQQQGAVAK	1	Unmodified	1343.647	0.64697839	3314	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	23.56	23.276	2	8.2579E-10	19988	160511_QHF_FH_JSI9i_1	121.83	94.088			0.57407	0.67701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57407	0.67701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15085000	10976000	4108600	0	0	0	15085000	10976000	4108600	0	0	0	0	0	0	10594	3314	10032	65506;65507;65508;65509;65510;65511;65512	88335;88336;88337;88338;88339;88340;88341	88340			7	
EAWPHIK	1	Unmodified	879.46029	0.46028724	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	5.06		8	7						3	5	5	6	2	30.984	28.69	2;3	0.0047017	25139	160511_QHF_FH_JSI10i_2	57.559	57.559			1.21	1.1527	33.158	17	7	Median	1.2878	1.0297	33.211	5	3	Median	1.2327	1.4325	30.865	5	2	Median	1.1338	1.1527	29.91	5	2	Median	1.0008	1.0624	47.341	2	0	Median	1426000000	660190000	765850000	319650000	131140000	188500000	351350000	154320000	197030000	551410000	275460000	275950000	203640000	99268000	104370000	10595	1764	10033	65513;65514;65515;65516;65517;65518;65519;65520;65521;65522;65523;65524;65525;65526;65527;65528;65529;65530	88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354;88355;88356;88357;88358;88359;88360;88361;88362	88358			21	
EAWPHIKTIFQGIAAK	2	Acetyl (K)	1851.0043	0.004304102	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		86.937	77.614	2;3	2.3175E-33	43141	160513_QHF_FH_JSI11Kac_6	172.24	136.93			0.39946	0.37364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39946	0.37364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	202910000	158470000	44435000	0	0	0	0	0	0	202910000	158470000	44435000	0	0	0	10596	1764	10034	65531;65532	88363;88364;88365	88363	1775		3	
EAYEAGLIGK	1	Unmodified	1049.5393	0.53932542	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.194	37.576	2	3.3771E-05	34126	160511_QHF_FH_JSI12i_1	96.027	63.899			0.83581	0.81656	12.375	4	0	Median	0.93435	0.76348	NaN	1	0	Median	0.80737	0.94696	NaN	1	0	Median	0.73133	0.7221	NaN	1	0	Median	0.86525	0.87333	NaN	1	0	Median	585590000	348040000	237550000	137440000	75170000	62270000	141170000	84700000	56474000	176790000	108180000	68615000	130190000	79994000	50195000	10597	1687	10035	65533;65534;65535;65536	88366;88367;88368;88369;88370;88371	88368			6	
EAYFSVGLQGIAEK	1	Unmodified	1510.7668	0.76675917	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.884	75.711	2	0.00055576	68635	160511_QHF_FH_JSI10i_1	70.488	15.448			0.74944	0.86535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74944	0.86535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29313000	17831000	11482000	0	0	0	29313000	17831000	11482000	0	0	0	0	0	0	10598	2900	10036	65537	88372;88373	88373			2	
EAYGAVTQTVR	0	Unmodified	1193.6041	0.60405094	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		26.658	26.176	2	0.00015918	23053	160511_QHF_FH_JSI11i_1	93.325	59.072			1.0833	1.2433	10.922	4	4	Linear	1.5813	1.2925	NaN	1	1	Median	0.95098	1.11	NaN	1	1	Median	1.0833	1.0616	9.8257	2	2	Median	NaN	NaN	NaN	0	0	Median	503350000	208240000	295110000	124600000	43384000	81212000	114760000	54712000	60047000	264000000	110150000	153850000	0	0	0	10599	2635	10037	65538;65539;65540;65541	88374;88375;88376;88377	88375			4	
EAYMGNVLQGGEGQAPTR	0	Unmodified	1876.8738	0.87376021	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			1	3	1	3	51.642	49.536	2;3	1.4617E-137	44235	160511_QHF_FH_JSI9i_1	341.27	309.43			0.94369	1.0611	9.4746	7	1	Median	1.3089	1.0611	NaN	1	0	Median	0.91132	1.1197	7.1019	3	0	Median	0.94369	0.90841	NaN	1	0	Median	0.95143	1.0423	11.559	2	1	Median	2164800000	1050500000	1114300000	417760000	178480000	239270000	793130000	420840000	372280000	499460000	235320000	264140000	454430000	215870000	238560000	10600	1249	10038	65542;65543;65544;65545;65546;65547;65548;65549	88378;88379;88380;88381;88382;88383;88384;88385;88386;88387;88388;88389;88390	88389			13	
EAYMGNVLQGGEGQAPTR	0	Oxidation (M)	1892.8687	0.86867484	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		36.882	36.143	2	2.0613E-16	32336	160511_QHF_FH_JSI10i_1	127.71	103.42			2.0344	1.8149	28.405	2	2	Median	1.7892	1.4846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3131	2.2186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41201000	10082000	31119000	9564300	3724000	5840300	0	0	0	31636000	6358000	25278000	0	0	0	10601	1249	10038	65550;65551;65552;65553	88391;88392;88393;88394	88393		880	4	
EAYNLFAVNGILFNHESPR	0	Unmodified	2190.0858	0.0858019	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		1	3						2	1	1	1	3	92.548	89.499	3	2.9518E-34	43226	160513_QHF_FH_JSI9Kac_6	165.3	139.75			0.92719	0.9068	43.303	6	1	Median	1.2677	1.1067	NaN	1	0	Median	0.30551	0.38654	NaN	1	0	Median	0.78365	0.74299	NaN	1	0	Median	1.097	1.1511	30.462	3	1	Median	215790000	104850000	110940000	76602000	28405000	48197000	11755000	8609000	3146000	24106000	16305000	7800500	103330000	51530000	51798000	10602	427	10039	65554;65555;65556;65557;65558;65559	88395;88396;88397;88398;88399;88400;88401	88399			7	
EAYPDHTQFEK	1	Unmodified	1363.6044	0.60444487	5174	Q9P016	THYN1	Thymocyte nuclear protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6	5.66		4					2			1	1	1	3	25.64	21.996	3	5.8412E-05	18388	160511_QHF_FH_JSI12i_2	78.903	73.06			1.086	1.1611	21.072	6	2	Median	1.644	1.4346	NaN	1	0	Median	1.2173	1.4363	NaN	1	0	Median	1.106	1.0876	NaN	1	0	Median	1.0423	1.1173	20.755	3	2	Median	132260000	63979000	68281000	33592000	14035000	19557000	16061000	7352700	8707900	42167000	22675000	19493000	40440000	19917000	20523000	10603	5174	10040	65560;65561;65562;65563;65564;65565	88402;88403;88404;88405;88406	88402			4	
EAYPEEAYIADLDAK	1	Unmodified	1696.7832	0.7831971	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	4	3	2	71.87	71.405	2;3	1.5279E-21	65152	160511_QHF_FH_JSI12i_1	177.83	163.41			1.0095	1.0408	14.817	9	0	Median	1.2136	0.99469	5.4502	2	0	Median	0.88154	1.0408	22.499	3	0	Plateau	1.0053	0.97757	0.19981	2	0	Median	1.0246	1.0768	3.1132	2	0	Median	2775600000	1398100000	1377500000	497190000	229900000	267290000	833750000	415880000	417870000	771100000	413640000	357460000	673560000	338700000	334860000	10604	1798	10041	65566;65567;65568;65569;65570;65571;65572;65573;65574;65575;65576	88407;88408;88409;88410;88411;88412;88413;88414;88415;88416;88417;88418;88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436;88437;88438;88439;88440	88417			34	
EAYPGDVFYLHSR	0	Unmodified	1552.731	0.73104237	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.55	6.5	1	9	8					13	9	10	10	12	8	62.688	56.824	2;3	5.8242E-20	30579	160513_QHF_FH_JSI11Kac_6	155.15	134.15			1.0531	1.0579	21.149	35	6	Median	1.3459	1.1517	20.525	10	2	Median	0.94661	1.1336	18.053	9	2	Median	1.0513	1.0148	26.33	9	2	Median	0.93295	1.0483	6.2405	7	0	Median	13411000000	6299900000	7110700000	2207200000	909210000	1298000000	3095400000	1605300000	1490000000	4917800000	2166100000	2751700000	3190300000	1619300000	1570900000	10605	1263	10042	65577;65578;65579;65580;65581;65582;65583;65584;65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602;65603;65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614;65615;65616	88441;88442;88443;88444;88445;88446;88447;88448;88449;88450;88451;88452;88453;88454;88455;88456;88457;88458;88459;88460;88461;88462;88463;88464;88465;88466;88467;88468;88469;88470;88471;88472;88473;88474;88475;88476;88477;88478;88479;88480;88481;88482;88483;88484;88485;88486;88487;88488;88489;88490;88491;88492;88493;88494;88495;88496;88497;88498;88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511;88512;88513;88514;88515;88516;88517;88518	88461			78	
EAYTAVVYHNR	0	Unmodified	1321.6415	0.64149908	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.458								3	7	3	3	3	1	33.787	24.81	2;3	1.9008E-10	13939	160513_QHF_FH_JSI11Kac_6	145.17	133.32			1.201	1.1155	32.076	8	3	Median	1.2647	1.0777	36.616	3	1	Median	1.3383	1.6015	50.048	2	1	Median	1.259	1.2359	15.581	2	1	Median	0.94358	1.0033	NaN	1	0	Median	78958000	40674000	38284000	21746000	9986800	11759000	25266000	12332000	12934000	25190000	13904000	11286000	6756000	4451200	2304800	10606	4181	10043	65617;65618;65619;65620;65621;65622;65623;65624;65625;65626	88519;88520;88521;88522;88523;88524;88525;88526;88527;88528;88529;88530	88522			12	
EAYVNANQAR	0	Unmodified	1134.5418	0.54178503	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.98	5					2	1			2	1	2	3	15.93	11.994	2	9.7093E-09	10632	160511_QHF_FH_JSI12i_1	122.52	84.958			1.1053	1.0703	55.421	6	0	Median	4.5397	3.6836	NaN	1	0	Median	0.79763	0.95192	NaN	1	0	Median	1.1053	1.0703	2.1066	2	0	Median	1.4235	1.4858	55.115	2	0	Median	347200000	162970000	184230000	82386000	18339000	64046000	131350000	76238000	55115000	4121600	2166900	1954700	129340000	66229000	63112000	10607	4416	10044	65627;65628;65629;65630;65631;65632;65633;65634	88531;88532;88533;88534;88535;88536;88537;88538;88539	88531			9	
EAYYWLR	0	Unmodified	999.48142	0.48141661	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	54.162	53.053	2	0.011105	46887	160511_QHF_FH_JSI10i_2	71.949	47.747			0.81041	0.99222	6.295	3	1	Plateau	1.287	1.1048	NaN	1	1	Median	0.81041	0.99222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88086	0.98924	NaN	1	0	Median	304880000	165320000	139550000	80107000	33734000	46373000	129190000	78833000	50357000	0	0	0	95578000	52755000	42824000	10608	1602	10045	65635;65636;65637	88540;88541	88541			2	
ECADLWPR	0	Unmodified	1045.4651	0.46511462	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	43.007	42.437	2	0.0030807	38173	160511_QHF_FH_JSI11i_1	75.243	71.309			0.97642	1.102	14.299	5	3	Median	NaN	NaN	NaN	0	0	Median	0.94916	1.1532	6.4191	2	2	Median	0.9727	0.95921	3.9448	2	1	Median	1.2611	1.3233	NaN	1	0	Median	566640000	295080000	271560000	0	0	0	200170000	120040000	80129000	262370000	129480000	132890000	104100000	45561000	58542000	10609	2022	10046	65638;65639;65640;65641;65642	88542;88543;88544;88545;88546;88547	88542			6	
ECEGIVPVPLAEK	1	Unmodified	1439.733	0.7330162	2114	P82932	MRPS6	28S ribosomal protein S6, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		66.472	65.748	2	0.00069087	59730	160511_QHF_FH_JSI11i_1	83.397	72.81			2.653	2.3703	39.591	2	2	Median	2.1537	1.7915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.268	3.1361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131100000	33575000	97520000	22567000	10569000	11998000	0	0	0	108530000	23007000	85522000	0	0	0	10610	2114	10047	65643;65644	88548;88549	88548			2	
ECFYIPK	1	Unmodified	955.44734	0.44733929	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.287	45.793	2	0.010853	41669	160511_QHF_FH_JSI12i_1	73.039	53.562			0.86051	1.0229	26.504	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86051	1.0229	NaN	1	0	Median	0.8522	0.82573	NaN	1	0	Median	1.3386	1.3987	NaN	1	0	Median	248970000	119810000	129160000	0	0	0	74786000	40480000	34306000	97820000	49076000	48744000	76362000	30252000	46110000	10611	2757	10048	65645;65646;65647	88550;88551	88551			2	
ECHLNADTVSSK	1	Unmodified	1359.6089	0.60887832	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.71	4.2		6					1				1	4	2	14.554	14.08	2;3	0.00012282	11183	160511_QHF_FH_JSI11i_2	58.508	55.38			0.99894	1.0032	40.03	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74252	0.7313	21.374	3	2	Median	1.3534	1.4983	23.378	2	1	Median	193140000	105810000	87332000	0	0	0	0	0	0	112500000	60788000	51710000	80642000	45020000	35622000	10612	2046	10049	65648;65649;65650;65651;65652;65653;65654	88552;88553;88554;88555;88556;88557;88558	88555			6	
ECMAGTSGSEEVK	1	Unmodified	1383.5646	0.56463025	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		14.98	14.795	2	2.4807E-10	12421	160511_QHF_FH_JSI10i_1	147.91	135.86			1.1338	1.2112	32.582	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3059	1.525	NaN	1	0	Median	0.98431	0.96198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107070000	55435000	51631000	0	0	0	51705000	21904000	29801000	55361000	33531000	21829000	0	0	0	10613	3328	10050	65655;65656	88559;88560	88560			2	
ECPFVIK	1	Unmodified	891.45242	0.45242467	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.308	41.68	2	0.014877	37880	160511_QHF_FH_JSI12i_1	57.463	30.147			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10614	3290	10051	65657	88561	88561			1	
ECPFVIKPK	2	Unmodified	1116.6002	0.60015154	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	36.962	35.618	3	0.022315	30272	160511_QHF_FH_JSI12i_2	40.724	15.869			4.4017	4.8061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4017	4.8061	NaN	1	1	Median	18096000	5196200	12900000	0	0	0	0	0	0	0	0	0	18096000	5196200	12900000	10615	3290	10052	65658	88562	88562			1	
ECPSDECGAGVFMASHFDR	0	Unmodified	2170.8507	0.85065829	2042	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	59.152	58.605	3	0.001475	50554	160511_QHF_FH_JSI12i_3	60.334	59.925			0.98768	1.2026	15.385	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9802	1.2026	NaN	1	0	Median	0.98768	0.97175	NaN	1	0	Median	1.3202	1.3101	NaN	1	0	Median	215330000	102780000	112560000	0	0	0	82981000	41509000	41472000	55778000	29197000	26582000	76576000	32070000	44506000	10616	2042	10053	65659;65660;65661	88563;88564	88564			0	
ECPSVLEYK	1	Unmodified	1123.522	0.52196079	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			39.028	38.647	2	0.012075	34638	160511_QHF_FH_JSI10i_1	57.708	45.661			1.0223	1.2135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0223	1.2135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59342000	27638000	31704000	0	0	0	59342000	27638000	31704000	0	0	0	0	0	0	10617	5697	10054	65662	88565	88565			1	
ECSDVQPK	1	Unmodified	961.4175	0.41749572	356	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.2571	6.0253	2	0.0016913	4039	160511_QHF_FH_JSI12i_1	86.095	60.268			1.2478	1.2762	32.238	3	1	Median	NaN	NaN	NaN	0	0	Median	1.7883	2.1068	NaN	1	1	Median	1.2307	1.1542	NaN	1	0	Median	1.2478	1.2762	NaN	1	0	Median	179820000	77243000	102580000	0	0	0	46481000	18736000	27746000	63841000	27465000	36376000	69503000	31042000	38460000	10618	356	10055	65663;65664;65665;65666	88566;88567;88568;88569	88567			4	
ECSPWMSDFK	1	Unmodified	1285.5107	0.51074418	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.353	57.696	2	0.041969	52378	160511_QHF_FH_JSI12i_1	44.863	40.565			1.5347	1.6072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5347	1.6072	NaN	1	1	Median	62859000	28310000	34549000	0	0	0	0	0	0	0	0	0	62859000	28310000	34549000	10619	2094	10056	65667	88570	88570			1	
ECTIVPSNHYGPIPGIPVGTMWR	0	Unmodified	2580.2617	0.26173413	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		93.098	93.098	3	0.022567	83003	160511_QHF_FH_JSI11i_3	26.005	22.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10620	4259	10057	65668	88571	88571			1	
ECVLPGGETAGDMGK	1	Unmodified	1519.6647	0.66467864	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.477	41.981	2	0.0003155	37901	160511_QHF_FH_JSI11i_1	98.353	80.918			0.93117	0.95574	15.72	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0892	1.0681	NaN	1	1	Median	0.79608	0.8552	NaN	1	1	Median	81812000	43252000	38559000	0	0	0	0	0	0	41985000	21652000	20333000	39827000	21601000	18226000	10621	1557	10058	65669;65670;65671	88572;88573;88574	88572			3	
ECVPNSNER	0	Unmodified	1103.4666	0.46657118	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	8.3359	8.0981	2	0.0019951	6024	160511_QHF_FH_JSI12i_1	66.621	56.207		+	1.0094	1.0739	28.347	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0616	1.2713	NaN	1	0	Median	0.74872	0.73121	NaN	1	0	Median	1.0094	1.0739	NaN	1	0	Median	148420000	74329000	74093000	0	0	0	54446000	26946000	27500000	57749000	28669000	29080000	36227000	18714000	17513000	10622	66	10059	65672;65673;65674	88575	88575			1	
ECYVFKPK	2	Acetyl (K)	1111.5372	0.53721693	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		52.987	42.189	2	0.015948	24558	160513_QHF_FH_JSI11Kac_4	71.877	57.013			0.13918	0.13676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13918	0.13676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6305700	5763300	542360	0	0	0	0	0	0	6305700	5763300	542360	0	0	0	10623	1604	10060	65675	88576	88576	1629		1	
EDAAGTSGLGELNSR	0	Unmodified	1475.6852	0.68521439	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	35.212	34.742	2	1.2734E-06	31011	160511_QHF_FH_JSI10i_1	153.38	138.23			0.95686	1.0586	21.314	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0477	1.2308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87394	0.91047	NaN	1	0	Median	208060000	108380000	99683000	0	0	0	88361000	50224000	38137000	0	0	0	119700000	58155000	61545000	10624	2943	10061	65676;65677;65678	88577;88578;88579	88579			3	
EDAANNYAR	0	Unmodified	1022.4417	0.44173664	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	5.45	5	4	4		3	4	2			5	5	6	6	8.5707	5.5417	2	1.8873E-43	3628	160513_QHF_FH_JSI10Kac_3	210.26	168.76			0.96818	0.99212	10.05	21	2	Median	1.2845	1.1107	6.6346	4	2	Median	0.83589	0.9761	12.932	5	0	Median	0.9902	0.96616	8.5219	6	0	Median	0.9546	0.99271	3.9335	6	0	Median	51002000000	26189000000	24813000000	18164000000	8971100000	9193000000	11375000000	5944700000	5429900000	11087000000	5687400000	5399300000	10377000000	5585700000	4790800000	10625	27;2073;2074;4359	10062	65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690;65691;65692;65693;65694;65695;65696;65697;65698;65699;65700	88580;88581;88582;88583;88584;88585;88586;88587;88588;88589;88590;88591;88592;88593;88594;88595;88596;88597;88598;88599;88600;88601;88602;88603;88604;88605;88606;88607;88608;88609;88610;88611;88612;88613;88614;88615;88616;88617	88612			38	
EDAEAPGIRDHESL	0	Unmodified	1537.7009	0.70086445	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								3	3	3	3	32.336	31.519	2;3	5.3964E-51	27621	160511_QHF_FH_JSI10i_2	215.08	182.08			1.0048	1.0179	16.704	12	0	Median	1.2814	1.1261	8.5233	3	0	Median	0.76636	0.94215	19.638	3	0	Median	0.94018	0.94859	13.804	3	0	Median	1.0738	1.1548	22.854	3	0	Median	1660500000	853690000	806860000	308660000	144390000	164280000	404780000	230000000	174790000	639830000	310090000	329740000	307270000	169220000	138050000	10626	1758	10063	65701;65702;65703;65704;65705;65706;65707;65708;65709;65710;65711;65712	88618;88619;88620;88621;88622;88623;88624;88625;88626;88627;88628;88629;88630;88631;88632	88631			15	
EDAFYSWESSKDPAEQQGK	2	Unmodified	2200.9549	0.95490689	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	1	2	51.714	50.885	3	0.00043179	44502	160511_QHF_FH_JSI9i_2	61.648	53.427			0.93707	0.91801	44.604	5	4	Median	0.75787	0.65096	NaN	1	1	Median	0.45696	0.54099	NaN	1	1	Median	0.96929	0.91801	NaN	1	0	Median	1.2335	1.3055	39.461	2	2	Median	220120000	115020000	105100000	32341000	16129000	16212000	52968000	41146000	11822000	62730000	25760000	36970000	72080000	31982000	40097000	10627	2217	10064	65713;65714;65715;65716;65717;65718	88633;88634;88635;88636;88637;88638;88639	88639			6	
EDAGWYTVSAK	1	Unmodified	1225.5615	0.56151742	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			42.502	42.091	2	0.00056884	37844	160511_QHF_FH_JSI10i_1	84.658	73.168			0.88343	1.049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88343	1.049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133040000	68290000	64747000	0	0	0	133040000	68290000	64747000	0	0	0	0	0	0	10628	3805	10065	65719	88640	88640			1	
EDAIEHFMK	1	Unmodified	1118.5066	0.50664508	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.515	3	10	1							2	5	4	3	43.958	43.106	2;3	1.9049E-10	36836	160511_QHF_FH_JSI11i_2	131.22	98.613			0.89683	0.99484	16.388	11	4	Median	1.0321	0.88915	22.114	2	1	Median	0.9249	1.1355	7.5849	4	1	Median	0.9359	0.90352	6.3114	3	1	Median	0.72299	0.78107	11.948	2	1	Median	2472900000	1187600000	1285300000	336910000	149270000	187640000	650390000	303750000	346640000	1113700000	549450000	564280000	371870000	185080000	186790000	10629	939	10066	65720;65721;65722;65723;65724;65725;65726;65727;65728;65729;65730;65731;65732;65733	88641;88642;88643;88644;88645;88646;88647;88648;88649;88650;88651;88652;88653;88654;88655;88656;88657;88658;88659	88655			18	
EDALKLVQLK	2	Acetyl (K)	1197.6969	0.69688869	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	78.144	67.596	2	0.0018891	35802	160513_QHF_FH_JSI10Kac_4	82.645	49.455			0.67202	0.73958	13.245	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71814	0.81219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62886	0.67345	NaN	1	0	Median	5918100	3448300	2469800	0	0	0	2597400	1579800	1017700	0	0	0	3320700	1868600	1452100	10630	122	10067	65734;65735	88660;88661	88660	79		2	
EDALLYQSK	1	Unmodified	1065.5342	0.53424004	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	32.302	31.383	2	0.0010126	27515	160511_QHF_FH_JSI9i_1	70.908	48.417			0.98654	0.89672	7.2146	2	0	Median	1.0609	0.85212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9174	0.94365	NaN	1	0	Median	140350000	70912000	69440000	59646000	25691000	33955000	0	0	0	0	0	0	80706000	45221000	35485000	10631	1703	10068	65736;65737;65738	88662;88663	88663			2	
EDALPGQK	1	Unmodified	856.42905	0.42904669	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				2	3	2	2	15.158	11.293	2	0.00026908	10788	160511_QHF_FH_JSI10i_1	114.72	88.612			0.88267	0.94347	62.737	9	0	Median	2.9098	2.3839	134.2	2	0	Median	0.75883	0.90291	2.5678	3	0	Plateau	0.93838	0.92693	7.361	2	0	Median	0.91537	0.98821	6.9576	2	0	Median	8389900000	4099700000	4290300000	2146800000	893530000	1253300000	1851500000	983670000	867870000	2048700000	999780000	1048900000	2342900000	1222700000	1120200000	10632	1441	10069	65739;65740;65741;65742;65743;65744;65745;65746;65747	88664;88665;88666;88667;88668;88669;88670;88671;88672;88673;88674	88669			11	
EDAMAMVDHCLK	1	Unmodified	1418.5992	0.59924161	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1.8	0.4	1	4								1	1	2	1	53.086	52.228	3	0.001788	44689	160511_QHF_FH_JSI12i_2	77.593	67.906			0.74484	0.78158	26.587	5	0	Median	0.74484	0.62947	NaN	1	0	Median	0.7227	0.88358	NaN	1	0	Median	0.64961	0.64072	28.105	2	0	Median	0.91813	1.0235	NaN	1	0	Median	312060000	175840000	136220000	39592000	23351000	16242000	44670000	29417000	15253000	130540000	73955000	56582000	97258000	49116000	48141000	10633	1556	10070	65748;65749;65750;65751;65752	88675	88675			0	
EDAMKAYINK	2	Acetyl (K);Oxidation (M)	1239.5805	0.58053831	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		33.455	24.673	2	0.0084595	14777	160513_QHF_FH_JSI11Kac_3	66.692	52.025			0.069138	0.067444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.069138	0.067444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1320500	1262400	58106	0	0	0	0	0	0	1320500	1262400	58106	0	0	0	10634	863	10071	65753	88676	88676	552;553	397	1	
EDAMKAYINK	2	Acetyl (K)	1223.5856	0.58562368	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		54.779	43.924	2	0.0053428	25490	160513_QHF_FH_JSI11Kac_4	75.378	59.045			0.16309	0.1538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16309	0.1538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1859800	1446000	413730	0	0	0	0	0	0	1859800	1446000	413730	0	0	0	10635	863	10071	65754	88677	88677	552;553		1	
EDAMVEFVK	1	Unmodified	1066.5005	0.50049707	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	53.377	52.71	2	4.7106E-06	47606	160511_QHF_FH_JSI11i_1	118.33	110.39			0.64677	0.82401	13.884	4	0	Linear	1.1571	0.93521	NaN	1	0	Median	0.66096	0.79079	NaN	1	0	Median	0.69934	0.67508	NaN	1	0	Median	0.81893	0.85862	NaN	1	0	Median	816530000	398620000	417900000	175570000	70541000	105030000	224180000	115830000	108350000	215640000	101900000	113740000	201140000	110350000	90790000	10636	4700	10072	65755;65756;65757;65758;65759	88678;88679;88680;88681;88682;88683;88684;88685;88686	88678			9	
EDANVFASAMMHALEVLNSQETGPTLPR	0	Unmodified	3027.443	0.44300555	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.91	102.83	3	2.4923E-21	90722	160511_QHF_FH_JSI9i_2	119.14	116.73			1.3269	1.1426	NaN	1	0	Median	1.3269	1.1426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27064000	11565000	15499000	27064000	11565000	15499000	0	0	0	0	0	0	0	0	0	10637	3570	10073	65760	88687	88687			1	
EDAPIGPHLQSMPSEQIR	0	Unmodified	2003.9735	0.97347426	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	3	3	3	55.612	54.82	2;3	8.1871E-32	46861	160511_QHF_FH_JSI12i_2	178.88	166.86			0.95656	0.95847	15.389	10	0	Median	1.1403	0.95847	9.2809	2	0	Median	0.7485	0.87748	25.019	3	0	Median	1.053	1.1024	15.712	3	0	Plateau	0.9595	1.0533	1.1661	2	0	Median	1946900000	921470000	1025400000	426820000	185620000	241200000	287970000	159720000	128250000	814250000	367530000	446720000	417870000	208600000	209260000	10638	2502	10074	65761;65762;65763;65764;65765;65766;65767;65768;65769;65770;65771	88688;88689;88690;88691;88692;88693;88694;88695;88696;88697;88698;88699;88700;88701;88702	88690			14	
EDAQVAAEILEIADTPSGDK	1	Unmodified	2070.9957	0.99570907	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		95.286	94.983	3	0.00046985	86391	160511_QHF_FH_JSI11i_1	53.625	44.805			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10639	891	10075	65772	88703	88703			1	
EDASAFPGK	1	Unmodified	920.42396	0.42396131	3005	Q5W0V3	FAM160B1	Protein FAM160B1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.202	18.721	2	0.0036707	16252	160511_QHF_FH_JSI12i_1	69.825	52.898			1.177	1.2154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.177	1.2154	NaN	1	1	Median	53986000	21515000	32471000	0	0	0	0	0	0	0	0	0	53986000	21515000	32471000	10640	3005	10076	65773	88704	88704			1	
EDAVLEYLK	1	Unmodified	1078.5546	0.55464113	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.448	63.828	2	1.1463E-05	58022	160511_QHF_FH_JSI12i_1	110.87	89.571			1.0832	1.0941	21.255	4	0	Median	0.97767	0.79603	NaN	1	0	Median	0.87101	1.0475	NaN	1	0	Median	1.2	1.1427	NaN	1	0	Median	1.2642	1.3189	NaN	1	0	Median	569740000	297400000	272340000	134520000	69820000	64702000	126360000	72742000	53615000	154800000	69524000	85272000	154070000	85317000	68752000	10641	1270	10077	65774;65775;65776;65777	88705;88706;88707;88708;88709;88710;88711;88712;88713	88708			9	
EDAVSFAEK	1	Unmodified	994.46074	0.46074075	310	O43181	NDUFS4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7	6	2					2				1	2	1		34.176	29.317	2	0.002369	26148	160511_QHF_FH_JSI10i_1	74.376	46.202			1.8695	1.9166	57.362	4	2	Median	1.6367	1.3477	NaN	1	1	Median	2.9213	3.3986	48.088	2	1	Median	1.5887	1.5185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	341220000	88754000	252470000	111740000	45645000	66092000	225010000	41249000	183760000	4474100	1859700	2614300	0	0	0	10642	310	10078	65778;65779;65780;65781	88714;88715;88716	88715			3	
EDAYDGVTSENMR	0	Unmodified	1485.6042	0.60418687	5006	Q9NUM4	TMEM106B	Transmembrane protein 106B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.606	31.004	2	0.0001407	27771	160511_QHF_FH_JSI11i_1	84.605	71.227			0.79294	0.85072	14.815	4	1	Median	0.76536	0.63349	NaN	1	0	Median	0.72949	0.84839	NaN	1	0	Median	0.89208	0.85429	NaN	1	0	Median	0.82153	0.85305	NaN	1	1	Median	140690000	78370000	62317000	33547000	21320000	12227000	39472000	22346000	17125000	37002000	19671000	17331000	30666000	15032000	15634000	10643	5006	10079	65782;65783;65784;65785	88717;88718;88719;88720;88721	88717			5	
EDDALWPPPDR	0	Unmodified	1309.5939	0.59388018	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	53.082	52.502	2	0.00062436	46647	160511_QHF_FH_JSI9i_1	74.841	62.314			0.79036	0.8386	10.481	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98427	0.94261	NaN	1	1	Median	0.81045	0.8386	11.339	2	2	Median	135050000	72995000	62060000	0	0	0	0	0	0	37010000	19838000	17172000	98045000	53157000	44888000	10644	1952;3963	10080	65786;65787;65788;65789	88722;88723;88724;88725	88725			4	
EDDIEDTMEESGWK	1	Unmodified	1682.6618	0.66176133	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	62.079	61.589	2	2.9931E-31	55746	160511_QHF_FH_JSI10i_1	163.78	157.78			0.98674	1.1031	12.999	3	1	Median	NaN	NaN	NaN	0	0	Median	0.98674	1.1031	NaN	1	1	Median	1.1925	1.1167	NaN	1	0	Median	0.8455	0.88637	NaN	1	0	Median	78358000	40578000	37780000	0	0	0	33052000	19096000	13956000	24300000	9448200	14852000	21005000	12034000	8971200	10645	3841	10081	65790;65791;65792;65793	88726;88727;88728;88729;88730	88730			5	
EDDLNSFNATDLK	1	Unmodified	1480.6682	0.66816734	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	61.254	56.207	2	1.1577E-15	50652	160511_QHF_FH_JSI11i_1	165.35	154.98			1.0293	1.1058	23.589	8	1	Median	1.4629	1.1931	NaN	1	0	Median	0.75889	0.90622	32.428	2	0	Median	1.0407	1.0073	9.3887	2	0	Median	1.0951	1.1359	30.443	3	1	Median	2169400000	1059100000	1110200000	438750000	156370000	282370000	643710000	359840000	283870000	587680000	276830000	310850000	499220000	266090000	233130000	10646	943	10082	65794;65795;65796;65797;65798;65799;65800;65801	88731;88732;88733;88734;88735;88736;88737;88738;88739;88740;88741;88742;88743	88731			13	
EDDMETKK	2	Unmodified	994.42773	0.42772606	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	5.2755	4.9345	2	0.0018517	2896	160511_QHF_FH_JSI12i_1	84.743	30.538			0.93256	0.85475	46.169	3	1	Plateau	0.85871	0.69959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.791	1.7573	NaN	1	1	Median	1.0152	1.0472	NaN	1	0	Median	391010000	198090000	192920000	135040000	80890000	54150000	0	0	0	121270000	54429000	66837000	134710000	62776000	71930000	10647	5650	10083	65802;65803;65804	88744;88745;88746	88745			3	
EDDSSASTSQSTR	0	Unmodified	1369.5593	0.55934517	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.87	5.11	4	3		3	5					1	4	5	5	5.0633	0.73119	2;3	3.7753E-117	2536	160511_QHF_FH_JSI11i_1	279.51	269.28			1.2703	1.2146	17.245	14	0	Median	1.2377	1.0344	NaN	1	0	Median	1.3161	1.6169	3.8217	3	0	Plateau	1.1774	1.1427	10.648	5	0	Median	1.0392	1.1015	18.816	5	0	Median	4383500000	2028300000	2355200000	350460000	156840000	193620000	1159100000	493250000	665830000	1321900000	662130000	659750000	1552100000	716130000	835970000	10648	1237	10084	65805;65806;65807;65808;65809;65810;65811;65812;65813;65814;65815;65816;65817;65818;65819	88747;88748;88749;88750;88751;88752;88753;88754;88755;88756;88757;88758;88759;88760;88761;88762;88763;88764;88765;88766;88767;88768;88769;88770;88771	88747			25	
EDDVPQFTSAGENFDK	1	Unmodified	1797.7693	0.76933795	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.853	59.197	2	0.013119	53839	160511_QHF_FH_JSI12i_1	45.257	39.024			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10649	1313	10085	65820	88772	88772			1	
EDEEEDDDVVAPKPPIEPEEEK	2	Unmodified	2537.1181	0.11806863	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.89	52.397	3	5.6185E-08	47330	160511_QHF_FH_JSI10i_1	92.01	85.24			1.0059	1.11	4.5741	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94519	1.11	NaN	1	0	Median	1.08	1.0179	NaN	1	0	Median	1.0706	1.0903	NaN	1	0	Median	253010000	120600000	132420000	0	0	0	96717000	46478000	50239000	71731000	38496000	33235000	84567000	35623000	48943000	10650	2400	10086	65821;65822;65823	88773;88774;88775	88775			2	
EDEEEDEPVVIK	1	Unmodified	1429.646	0.64603491	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	37.514	36.949	2	3.214E-05	32724	160511_QHF_FH_JSI9i_1	106.29	96.059			1.3559	1.3416	13.825	5	3	Median	1.3559	1.1046	NaN	1	0	Median	1.0458	1.2399	11.15	2	2	Median	1.5749	1.532	NaN	1	1	Median	1.3746	1.4055	NaN	1	0	Median	315970000	144290000	171680000	48189000	21790000	26399000	135870000	65352000	70514000	74652000	31819000	42833000	57266000	25329000	31937000	10651	5412	10087	65824;65825;65826;65827;65828	88776;88777;88778;88779;88780	88780			5	
EDEGEIQPENKEDSIENVR	1	Unmodified	2229.0033	0.0033136416	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		36.35	36.096	3	0.049107	32449	160511_QHF_FH_JSI11i_1	29.444	15.539			1.3551	1.3162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3551	1.3162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16917000	3750100	13167000	0	0	0	0	0	0	16917000	3750100	13167000	0	0	0	10652	8	10088	65829	88781	88781			1	
EDEIPETVSLEMLDAAK	1	Unmodified	1888.8976	0.89757493	3958	Q96A26	FAM162A	Protein FAM162A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				93.849	93.097	3	4.233E-05	82583	160511_QHF_FH_JSI9i_1	57.52	47.42			1.3224	1.0547	NaN	1	0	Median	1.3224	1.0547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25308000	11794000	13514000	25308000	11794000	13514000	0	0	0	0	0	0	0	0	0	10653	3958	10089	65830	88782;88783	88782			2	
EDENSWFNLFVIHQNR	0	Unmodified	2046.9548	0.95478773	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	1	2	4	2	92.486	88.171	2;3	3.1895E-232	46359	160513_QHF_FH_JSI10Kac_6	340.52	310.72			1.1571	1.2267	14.218	9	0	Median	1.5167	1.3167	NaN	1	0	Median	1.0733	1.2893	1.6451	2	0	Median	1.1395	1.0769	21.417	4	0	Median	1.1728	1.2245	0.2565	2	0	Median	1484700000	710210000	774480000	283160000	110530000	172630000	493460000	251770000	241680000	378580000	186040000	192540000	329490000	161860000	167630000	10654	1695	10090	65831;65832;65833;65834;65835;65836;65837;65838;65839	88784;88785;88786;88787;88788;88789;88790	88790			7	
EDENVPFLLVGNK	1	Unmodified	1472.7511	0.75110911	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.794	78.32	2	6.2647E-05	71245	160511_QHF_FH_JSI12i_1	106.29	86.529			0.74419	0.69865	8.2575	4	0	Median	0.84854	0.6918	NaN	1	0	Median	0.59685	0.70557	NaN	1	0	Median	0.83964	0.8138	NaN	1	0	Median	0.65959	0.6789	NaN	1	0	Median	264730000	145150000	119570000	55931000	27585000	28346000	73676000	43291000	30385000	76743000	39686000	37057000	58376000	34591000	23785000	10655	993	10091	65840;65841;65842;65843	88791;88792;88793;88794;88795	88792			5	
EDEQQQALQDIASR	0	Unmodified	1629.7594	0.75944196	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.202	45.525	2	6.765E-30	40942	160511_QHF_FH_JSI10i_1	190.1	171.79			0.90801	0.97085	8.6532	4	0	Median	1.2457	1.0199	NaN	1	0	Median	0.85455	0.99233	NaN	1	0	Median	0.96482	0.94982	NaN	1	0	Median	0.7829	0.83863	NaN	1	0	Median	319340000	166130000	153210000	56269000	27390000	28878000	70145000	42126000	28019000	101030000	53280000	47754000	91891000	43333000	48559000	10656	1694	10092	65844;65845;65846;65847	88796;88797;88798;88799;88800;88801;88802;88803;88804	88802			9	
EDEVEEWQHR	0	Unmodified	1355.5742	0.57420737	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.427	24.168	2	1.725E-08	20161	160511_QHF_FH_JSI12i_2	116.52	90.583			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10657	1073	10093	65848	88805	88805			1	
EDEVQAIATLIEK	1	Unmodified	1457.7613	0.76133944	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.862	94.546	2	6.7766E-06	85520	160511_QHF_FH_JSI10i_1	125.54	96.069			1.0426	1.0412	13.383	4	1	Median	1.0834	0.88671	NaN	1	0	Median	1.0061	1.173	NaN	1	0	Median	0.98028	0.95723	NaN	1	0	Median	1.0805	1.1326	NaN	1	1	Median	199680000	97186000	102500000	35741000	15622000	20119000	68744000	33562000	35182000	54196000	30539000	23657000	41001000	17463000	23538000	10658	4176	10094	65849;65850;65851;65852	88806;88807;88808;88809;88810;88811	88809			6	
EDFDSLLQSAK	1	Unmodified	1251.5983	0.59829686	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	5.99	9				1	9	3			7	6	3	6	67.008	60.414	1;2	3.2599E-124	60172	160511_QHF_FH_JSI9i_1	294.36	265.96			0.97636	0.97362	23.942	20	2	Median	1.2125	1.0589	33.428	6	1	Plateau	0.8144	0.97636	17.595	5	0	Median	1.0067	0.9826	3.5283	3	0	Median	0.89941	0.95584	21.565	6	1	Median	14800000000	7319100000	7480800000	2581900000	1179800000	1402100000	3417100000	1755100000	1662000000	3892700000	2006500000	1886200000	4908100000	2377600000	2530500000	10659	895	10095	65853;65854;65855;65856;65857;65858;65859;65860;65861;65862;65863;65864;65865;65866;65867;65868;65869;65870;65871;65872;65873;65874	88812;88813;88814;88815;88816;88817;88818;88819;88820;88821;88822;88823;88824;88825;88826;88827;88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838;88839;88840;88841;88842;88843;88844;88845;88846;88847;88848;88849;88850;88851;88852;88853;88854;88855;88856	88843			44	
EDFDSLLQSAKKK	3	Acetyl (K)	1549.7988	0.79878758	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	2		By matching	By MS/MS		14.5	0.5							1	1			1	1		77.064	66.469	3	0.011729	35365	160513_QHF_FH_JSI11Kac_5	51.546	39.57			0.43205	0.46374	59.287	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61265	0.70525	NaN	1	0	Median	0.30468	0.30494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10902000	7493300	3408600	0	0	0	2411700	1481200	930460	8490200	6012000	2478100	0	0	0	10660	895	10096	65875;65876	88857	88857	633		1	
EDFEEAR	0	Unmodified	894.37193	0.37192574	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.73	4	2				4				2	3	3	2	16.086	11.858	2	2.2813E-05	8066	160513_QHF_FH_JSI12Kac_3	130	35.995			1.0208	1.0515	15.945	10	0	Median	1.2952	1.0678	6.1439	2	0	Median	0.96959	1.1641	8.9216	3	0	Plateau	0.83127	0.80894	14.569	3	0	Plateau	0.89958	0.96587	3.7071	2	0	Median	12210000000	6073300000	6137100000	3287500000	1545100000	1742300000	2931200000	1425400000	1505800000	2700700000	1374200000	1326500000	3291100000	1728600000	1562500000	10661	779	10097	65877;65878;65879;65880;65881;65882;65883;65884;65885;65886	88858;88859;88860;88861;88862;88863;88864;88865;88866;88867;88868;88869;88870;88871;88872	88871			15	
EDFEEARK	1	Unmodified	1022.4669	0.46688876	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	3.06	7	8					1			3	5	3	5	11.079	10.21	2;3	1.3409E-05	7803	160511_QHF_FH_JSI11i_2	140.09	41.566			0.87882	0.99012	26.491	16	2	Median	1.288	1.0822	19.868	3	0	Plateau	0.85182	1.0356	16.136	5	2	Median	0.6519	0.66342	5.4413	3	0	Plateau	0.90666	0.98739	24.134	5	0	Median	2477000000	1286800000	1190200000	415800000	184200000	231600000	793930000	403850000	390080000	626510000	343000000	283510000	640800000	355790000	285010000	10662	779	10098	65887;65888;65889;65890;65891;65892;65893;65894;65895;65896;65897;65898;65899;65900;65901;65902	88873;88874;88875;88876;88877;88878;88879;88880;88881;88882;88883;88884;88885;88886;88887;88888;88889;88890;88891;88892;88893;88894	88887			22	
EDFENIMEISSWGGK	1	Unmodified	1740.7665	0.76650118	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		93.825	93.653	2	0.0010237	85273	160511_QHF_FH_JSI11i_1	79.492	70.538			1.5928	1.6596	4.7548	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5283	1.7164	NaN	1	1	Median	1.66	1.6048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30899000	12642000	18257000	0	0	0	18241000	7606300	10634000	12658000	5035300	7622700	0	0	0	10663	1430	10099	65903;65904	88895;88896	88895			2	
EDFENIMEISSWGGKPSPFSK	2	Unmodified	2384.0995	0.099462633	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.216	97.232	3	1.2575E-09	84231	160511_QHF_FH_JSI12i_3	107.45	93.291			0.9053	0.8673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9053	0.8673	NaN	1	0	Median	31077000	16300000	14777000	0	0	0	0	0	0	0	0	0	31077000	16300000	14777000	10664	1430	10100	65905	88897;88898	88898			2	
EDFLVYK	1	Unmodified	912.45928	0.45928418	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.955	51.283	2	0.027514	46229	160511_QHF_FH_JSI10i_1	53.554	28.556			1.2013	1.1554	22.476	4	1	Median	1.363	1.1199	NaN	1	0	Median	1.0587	1.192	NaN	1	0	Median	1.4037	1.3369	NaN	1	0	Median	0.75618	0.79307	NaN	1	1	Median	157360000	73723000	83637000	47154000	18457000	28697000	34084000	18941000	15144000	38157000	14818000	23339000	37964000	21507000	16457000	10665	138	10101	65906;65907;65908;65909	88899;88900;88901	88901			3	
EDFPWSGK	1	Unmodified	964.42905	0.42904669	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.704	49.025	2	0.00028345	44259	160511_QHF_FH_JSI11i_1	113.5	95.938			0.99242	1.013	10.445	4	0	Median	1.0396	0.86323	NaN	1	0	Median	0.85845	1.0185	NaN	1	0	Median	1.1538	1.1094	NaN	1	0	Median	0.94742	1.0076	NaN	1	0	Median	1027300000	495510000	531840000	202360000	91436000	110920000	228860000	122720000	106150000	307420000	141450000	165970000	288710000	139910000	148800000	10666	1579	10102	65910;65911;65912;65913	88902;88903;88904;88905;88906;88907;88908;88909	88903			8	
EDFPWSGKVK	2	Acetyl (K)	1233.603	0.60298831	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	74.516	63.912	2	0.034461	34374	160513_QHF_FH_JSI12Kac_4	54.608	36.296			0.024663	0.028691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.024663	0.028691	NaN	1	1	Median	1164300	1135900	28360	0	0	0	0	0	0	0	0	0	1164300	1135900	28360	10667	1579	10103	65914	88910	88910			1	
EDFRDLIR	0	Unmodified	1062.5458	0.54580778	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	54.907	54.094	3	0.0073943	47711	160511_QHF_FH_JSI10i_2	43.083	26.543			1.0748	1.1771	31.455	5	2	Median	2.366	2.0911	NaN	1	1	Median	0.74415	0.92245	NaN	1	0	Median	1.1733	1.2295	NaN	1	0	Median	1.0364	1.1041	9.0512	2	1	Median	137720000	65231000	72490000	15564000	5511500	10053000	23962000	16596000	7366500	37530000	17021000	20509000	60664000	26103000	34561000	10668	2442	10104	65915;65916;65917;65918;65919;65920	88911;88912;88913;88914;88915;88916;88917;88918	88916			8	
EDFSDMVAEHAAK	1	Unmodified	1448.6242	0.62419403	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								3	3	3	3	48.908	48.026	2;3	2.7221E-05	42275	160511_QHF_FH_JSI10i_2	89.507	84.705			1.0037	1.0029	11.547	12	0	Median	1.0923	0.92342	18.411	3	0	Plateau	0.75247	0.93739	4.9252	3	0	Median	0.99365	1.022	8.289	3	0	Median	0.92109	1.0193	8.1267	3	0	Plateau	2465900000	1283300000	1182700000	363390000	158940000	204440000	653500000	361740000	291760000	822240000	408840000	413400000	626820000	353760000	273060000	10669	2412	10105	65921;65922;65923;65924;65925;65926;65927;65928;65929;65930;65931;65932	88919;88920;88921;88922;88923;88924;88925;88926;88927;88928;88929;88930;88931	88929			9	
EDFSGYDFENR	0	Unmodified	1377.5473	0.54732392	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.554	49.878	2	4.1073E-10	45248	160511_QHF_FH_JSI12i_1	139.39	132.5			0.8906	1.0401	5.299	4	0	Linear	1.2935	1.0547	NaN	1	0	Median	0.94672	1.0977	NaN	1	0	Median	1.0396	0.96766	NaN	1	0	Median	0.98336	1.0257	NaN	1	0	Median	299560000	154210000	145350000	52294000	27003000	25291000	102130000	57935000	44192000	69426000	35217000	34209000	75712000	34056000	41656000	10670	3539	10106	65933;65934;65935;65936	88932;88933;88934;88935;88936;88937;88938;88939	88935			8	
EDFSSMSAQLLYK	1	Unmodified	1517.7072	0.70719538	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	78.315	77.614	2	2.651E-05	70675	160511_QHF_FH_JSI12i_1	143.96	121.32			1.0222	0.96915	32.863	2	1	Median	0.90825	0.7682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1504	1.2227	NaN	1	0	Median	74936000	32625000	42312000	29994000	16251000	13743000	0	0	0	0	0	0	44942000	16374000	28568000	10671	5222	10107	65937;65938	88940;88941;88942	88940			3	
EDFTLLDFINAVK	1	Unmodified	1523.7872	0.78716026	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	102.62	102.51	2	1.8399E-66	88428	160511_QHF_FH_JSI12i_2	229.73	203.79			0.75286	0.88417	24.371	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60013	0.74421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94446	1.0505	NaN	1	0	Median	159220000	87420000	71800000	0	0	0	59896000	36863000	23033000	0	0	0	99323000	50557000	48766000	10672	5	10108	65939;65940	88943;88944	88943			2	
EDFTMMK	1	Unmodified	900.37213	0.37212543	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.939	37.521	2	0.019269	33721	160511_QHF_FH_JSI11i_1	58.604	46.699			0.98343	1.0563	26.809	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1163	1.3038	NaN	1	0	Median	0.9094	0.85583	NaN	1	0	Median	1.3699	1.4083	NaN	1	1	Median	168030000	87387000	80642000	0	0	0	57067000	31627000	25440000	63342000	33258000	30083000	47621000	22502000	25119000	10673	1042	10109	65941;65942;65943	88945;88946	88945			2	
EDGAISTIVLR	0	Unmodified	1172.6401	0.6401021	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.04	4	3	3			4	5	3		5	8	5	4	63.723	57.658	2	1.6248E-20	31318	160513_QHF_FH_JSI12Kac_4	173.32	141.39			0.87853	1.0156	26.154	22	8	Median	1.2246	1.0578	24.608	5	1	Median	0.85086	1.0236	27.951	8	4	Median	1.0363	1.007	28.663	5	2	Median	0.78581	0.84584	31.315	4	1	Median	5553200000	2925600000	2627500000	1084100000	427500000	656620000	1657400000	934510000	722930000	1577500000	863740000	713740000	1234100000	699860000	534260000	10674	1721	10110	65944;65945;65946;65947;65948;65949;65950;65951;65952;65953;65954;65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965	88947;88948;88949;88950;88951;88952;88953;88954;88955;88956;88957;88958;88959;88960;88961;88962;88963;88964;88965;88966;88967;88968;88969;88970;88971;88972;88973;88974;88975	88969			29	
EDGEFWMELR	0	Oxidation (M)	1326.5551	0.55505184	3187	Q6ZSI9	CAPN12	Calpain-12	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.748	27.076	2	0.0061583	24139	160511_QHF_FH_JSI12i_1	55.676	42.639			1.0289	0.99003	20.163	3	1	Plateau	0.90531	0.73666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.03	0.99003	NaN	1	0	Median	1.0187	1.083	NaN	1	0	Median	2825900000	1467600000	1358300000	660140000	372710000	287420000	0	0	0	1123600000	511380000	612250000	1042200000	583540000	458620000	10675	3187	10111	65966;65967;65968;65969	88976;88977;88978;88979	88977		2211	4	
EDGEFWMELR	0	Unmodified	1310.5601	0.56013721	3187	Q6ZSI9	CAPN12	Calpain-12	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.402	27.134	2	0.040929	23256	160511_QHF_FH_JSI9i_1	45.081	27.262			1.2676	1.1776	NaN	1	1	Median	1.2676	1.1776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9717600000	4821500000	4896000000	9717600000	4821500000	4896000000	0	0	0	0	0	0	0	0	0	10676	3187	10111	65970	88980	88980			1	
EDGELNLMK	1	Unmodified	1047.4907	0.49066067	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	44.73	41.164	2	1.4525E-05	37207	160511_QHF_FH_JSI12i_1	109.48	66.564			0.89666	0.94658	30.777	6	0	Median	0.66436	0.53231	NaN	1	0	Median	0.79554	0.92105	5.8454	2	0	Median	1.1085	1.062	18.253	2	0	Median	1.1752	1.2557	NaN	1	0	Median	1312400000	762570000	549790000	243870000	151140000	92732000	344240000	201430000	142810000	369260000	202080000	167180000	354990000	207920000	147070000	10677	5658	10112	65971;65972;65973;65974;65975;65976	88981;88982;88983;88984;88985;88986;88987;88988	88984			8	
EDGELNLMK	1	Oxidation (M)	1063.4856	0.48557529	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				42.259	41.045	2	0.0026092	36364	160511_QHF_FH_JSI9i_1	74.486	47.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10678	5658	10112	65977	88989	88989		2724	1	
EDGELNLMKK	2	Acetyl (K)	1217.5962	0.59618837	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		57.967	48.456	2	0.036232	25865	160513_QHF_FH_JSI11Kac_3	64.711	46.272			0.68974	0.73242	72.256	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0311	1.2208	NaN	1	0	Median	0.46138	0.43941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4181900	2634300	1547600	0	0	0	1896400	975880	920480	2285600	1658500	627080	0	0	0	10679	5658	10113	65978;65979	88990	88990			1	
EDGHMVTAR	0	Unmodified	1014.4553	0.45527821	3956	Q969Z3	MARC2	Mitochondrial amidoxime reducing component 2	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	7.92	7.5093	2	0.056573	5242	160511_QHF_FH_JSI12i_2	34.387	19.611			1.165	1.2515	24.685	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.407	1.4902	NaN	1	0	Median	0.96468	1.0511	NaN	1	0	Median	71232000	32814000	38418000	0	0	0	0	0	0	38105000	15894000	22211000	33127000	16920000	16207000	10680	3956	10114	65980;65981	88991	88991			1	
EDGLAQQQTQLNLR	0	Unmodified	1612.8169	0.81689726	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	5.81	4	2	1			5	1			1	5	2	5	50.499	44.515	2;3	3.6706E-156	39633	160511_QHF_FH_JSI9i_1	307.55	265.21			0.87462	0.94303	32.37	10	4	Median	1.3566	1.1196	NaN	1	0	Median	0.88244	1.0456	8.7085	3	2	Median	0.8987	0.87645	5.3936	2	0	Median	0.66815	0.71777	42.986	4	2	Median	3301300000	1605900000	1695400000	739900000	275130000	464770000	873860000	442920000	430940000	859020000	449220000	409800000	828510000	438640000	389870000	10681	1650	10115	65982;65983;65984;65985;65986;65987;65988;65989;65990;65991;65992;65993;65994	88992;88993;88994;88995;88996;88997;88998;88999;89000;89001;89002;89003;89004;89005;89006;89007;89008;89009;89010;89011;89012	89004			21	
EDGLPTGYLFVWHK	1	Unmodified	1660.8249	0.82494275	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.77		4	2						8	3	3	4	4	87.045	82.16	2;3	1.281E-113	42173	160513_QHF_FH_JSI11Kac_6	260.59	228.07			0.90331	0.9116	10.444	14	0	Median	1.0469	0.89083	3.9812	3	0	Median	0.76156	0.94299	6.419	3	0	Median	0.93149	0.90196	10.502	4	0	Median	0.7179	0.79284	16.167	4	0	Linear	7450800000	3884400000	3566400000	1367900000	687070000	680810000	2435700000	1372000000	1063700000	2613600000	1239600000	1374000000	1033700000	585730000	447920000	10682	3973	10116	65995;65996;65997;65998;65999;66000;66001;66002;66003;66004;66005;66006;66007;66008	89013;89014;89015;89016;89017;89018;89019;89020;89021;89022;89023;89024;89025;89026;89027;89028;89029;89030;89031;89032;89033;89034;89035;89036;89037	89019			25	
EDGMVPFVFVGTK	1	Unmodified	1424.701	0.70098779	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	90.357	89.821	2	0.001883	81930	160511_QHF_FH_JSI11i_1	73.435	64.113			1.0248	0.94413	3.0526	3	0	Median	1.1734	0.94413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0248	0.95252	NaN	1	0	Median	0.87349	0.89998	NaN	1	0	Median	161030000	80479000	80549000	40796000	20066000	20729000	0	0	0	68026000	32775000	35252000	52206000	27638000	24568000	10683	1725	10117	66009;66010;66011;66012	89038;89039	89038			2	
EDGNEEDKENQGDETQGQQPPQR	1	Unmodified	2627.0968	0.096773109	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		10.916	10.786	3	3.7631E-06	8479	160511_QHF_FH_JSI11i_1	62.362	59.714			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10684	2066	10118	66013	89040	89040			1	
EDGPGIPADIK	1	Unmodified	1110.5557	0.55570376	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5	5.66	2					1				2			1	42.205	40.991	2	0.0033801	36285	160511_QHF_FH_JSI9i_1	58.699	42.497			1.1985	0.98872	NaN	1	1	Median	1.1985	0.98872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156150000	76855000	79298000	156150000	76855000	79298000	0	0	0	0	0	0	0	0	0	10685	4212	10119	66014;66015;66016	89041;89042;89043	89042			3	
EDGPSVFGSFFLQHCVTMNTPVEK	1	Unmodified	2725.2516	0.25162295	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1		3	1	1	97.354	96.16	3	8.69E-78	46460	160513_QHF_FH_JSI10Kac_6	204.96	191.49			0.84768	0.9943	18.978	5	1	Median	NaN	NaN	NaN	0	0	Median	0.86328	1.0035	2.905	3	0	Median	0.75179	0.70085	NaN	1	0	Median	0.74184	0.74184	NaN	1	1	Median	203740000	116730000	87008000	0	0	0	94152000	54758000	39395000	67211000	40194000	27017000	42376000	21780000	20596000	10686	1544	10120	66017;66018;66019;66020;66021	89044;89045;89046;89047;89048;89049;89050;89051;89052;89053;89054	89053			11	
EDGQEYAQVIK	1	Unmodified	1278.6092	0.6091959	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	5.68	5	1			3	3				1	4	3	4	42.21	36.888	2	1.5392E-59	33137	160511_QHF_FH_JSI10i_1	233.45	184.03			1.1049	1.1658	16.257	11	3	Median	0.99513	0.8272	NaN	1	0	Median	0.85521	1.0003	1.2772	3	1	Plateau	1.1958	1.1671	1.3467	3	0	Median	1.1615	1.2703	11.521	4	2	Median	7505000000	3779600000	3725400000	1638900000	735070000	903850000	1550100000	1016600000	533500000	2212900000	1003400000	1209500000	2103000000	1024500000	1078600000	10687	1608	10121	66022;66023;66024;66025;66026;66027;66028;66029;66030;66031;66032;66033	89055;89056;89057;89058;89059;89060;89061;89062;89063;89064;89065;89066;89067;89068;89069	89061			15	
EDGSFSFYSLPSGGYTVIPFYRGER	0	Unmodified	2830.3239	0.32385992	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	1		By MS/MS			16	0									1		1			90.37	84.65	3	7.4679E-13	48143	160513_QHF_FH_JSI10Kac_6	92.29	79.415			0.84097	0.9803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84097	0.9803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50243000	26703000	23540000	0	0	0	50243000	26703000	23540000	0	0	0	0	0	0	10688	2638;2895	10122	66034	89070	89070			1	
EDGSGDRGDGPFR	0	Unmodified	1363.5753	0.57527001	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.573	5	9	1							3	4	4	4	13.286	12.869	2;3	0.00058658	10400	160511_QHF_FH_JSI9i_2	51.546	37.867			0.92821	1.0119	12.547	15	0	Median	1.3017	1.1366	31.153	3	0	Plateau	0.86287	1.034	2.0159	4	0	Median	1.0257	1.0107	2.3995	4	0	Median	0.91326	0.97826	1.9107	4	0	Median	1555800000	784270000	771530000	219200000	96595000	122600000	495220000	252780000	242440000	511390000	259940000	251450000	330000000	174950000	155040000	10689	1024	10123	66035;66036;66037;66038;66039;66040;66041;66042;66043;66044;66045;66046;66047;66048;66049	89071;89072;89073;89074;89075;89076;89077;89078;89079;89080;89081;89082;89083;89084;89085;89086;89087;89088	89078			18	
EDGTFYEFGEDIPEAPER	0	Unmodified	2099.896	0.89599502	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.784	78.309	2	6.9813E-99	71267	160511_QHF_FH_JSI11i_1	265.03	255.25			1.1069	1.1883	7.1642	4	0	Linear	1.2672	1.019	NaN	1	0	Median	1.001	1.192	NaN	1	0	Median	1.1994	1.1635	NaN	1	0	Median	1.0216	1.0791	NaN	1	0	Median	195630000	92061000	103560000	19922000	8491700	11430000	75301000	35343000	39958000	59660000	29160000	30500000	40741000	19066000	21675000	10690	375	10124	66050;66051;66052;66053	89089;89090;89091;89092;89093;89094;89095	89089			7	
EDGVTPYMIFFK	1	Unmodified	1445.6901	0.69008876	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	5.25	5	4						2		2	4	3	2	98.29	96.299	2	3.8118E-05	87324	160511_QHF_FH_JSI9i_2	103.7	97.167			0.78005	0.85179	20.686	11	3	Median	1.091	0.90471	1.2622	2	0	Median	0.7123	0.83011	31.876	4	3	Median	0.852	0.83385	8.1459	3	0	Plateau	0.85981	0.90076	17.643	2	0	Median	268090000	143840000	124250000	39633000	18892000	20741000	98296000	54395000	43901000	73311000	38545000	34766000	56851000	32008000	24843000	10691	1036	10125	66054;66055;66056;66057;66058;66059;66060;66061;66062;66063;66064	89096;89097;89098;89099;89100;89101;89102;89103;89104;89105;89106;89107;89108;89109;89110	89103			15	
EDGVTPYMIFFK	1	Oxidation (M)	1461.685	0.68500338	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS		15	0								3		1	1	1		85.99	75.533	2	0.0023592	39728	160513_QHF_FH_JSI11Kac_5	65.305	49.415			0.87969	0.91665	0.74795	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82975	0.92151	NaN	1	0	Median	0.93264	0.91182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4060000	2425100	1634900	0	0	0	1165100	705430	459630	2895000	1719700	1175300	0	0	0	10692	1036	10125	66065;66066;66067	89111;89112	89112		651	2	
EDHKNVR	1	Acetyl (K)	938.45699	0.45699277	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							6				2	2	2	5.5535	-2.7898	2;3	0.0059262	1859	160513_QHF_FH_JSI11Kac_4	67.981	46.681			0.27184	0.25644	61.526	6	0	Linear	NaN	NaN	NaN	0	0	Median	1.1815	1.4123	4.1767	2	0	Median	0.3618	0.3572	3.4942	2	0	Median	0.6497	0.70642	0.38183	2	0	Median	252800000	167790000	85009000	0	0	0	37784000	16686000	21097000	172810000	125370000	47439000	42210000	25737000	16473000	10693	4657	10126	66068;66069;66070;66071;66072;66073	89113;89114;89115;89116;89117;89118;89119;89120;89121	89119	3209		9	
EDHSLEHR	0	Unmodified	1021.4577	0.45772105	1913	P60520	GABARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.5523	4.3582	2	0.0079733	2074	160511_QHF_FH_JSI11i_2	53.968	38.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10694	1913	10127	66074	89122	89122			1	
EDIDAAIETYNLLSER	0	Unmodified	1850.8898	0.88978743	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									3	1	2	94.466	94.27	2;3	1.4837E-36	85814	160511_QHF_FH_JSI12i_1	246.3	236.65			1.3656	1.3487	23.156	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0689	1.263	26.465	3	3	Plateau	1.3928	1.3487	NaN	1	1	Median	1.1559	1.1672	NaN	1	1	Median	449650000	193330000	256320000	0	0	0	256030000	105590000	150440000	79024000	30341000	48683000	114590000	57390000	57204000	10695	1242	10128	66075;66076;66077;66078;66079;66080	89123;89124;89125;89126;89127;89128;89129	89125			7	
EDIDTAMK	1	Unmodified	921.41135	0.41134771	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	3	1	24.033	21.9	2	0.0026131	18750	160511_QHF_FH_JSI9i_1	78.77	30.01			0.9605	0.88313	8.8045	5	1	Median	1.0237	0.83105	NaN	1	0	Median	0.73854	0.88313	NaN	1	0	Median	0.9248	0.9199	8.912	2	1	Median	0.96321	1.0233	NaN	1	0	Median	1730500000	857530000	872990000	424770000	150670000	274100000	294940000	197370000	97571000	370650000	176010000	194640000	640160000	333480000	306670000	10696	2770	10129	66081;66082;66083;66084;66085;66086;66087	89130;89131;89132;89133;89134;89135;89136;89137;89138	89137			9	
EDIDTAMK	1	Oxidation (M)	937.40626	0.40626233	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				23.259	22.053	2	0.0057852	18764	160511_QHF_FH_JSI9i_1	70.525	50.603			1.4927	1.2324	NaN	1	0	Median	1.4927	1.2324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112850000	39474000	73380000	112850000	39474000	73380000	0	0	0	0	0	0	0	0	0	10697	2770	10129	66088	89139	89139		2132	1	
EDIGVGSYSVCK	1	Unmodified	1312.5969	0.59691665	1755	P51812;Q15349;Q9UK32	RPS6KA3;RPS6KA2;RPS6KA6	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6	yes	no	0	0	0	0				By MS/MS	1	0	1												1	45.679	45.026	2	0.00018694	40878	160511_QHF_FH_JSI12i_1	97.284	78.013			1.2514	1.2881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2514	1.2881	NaN	1	1	Median	71551000	34153000	37398000	0	0	0	0	0	0	0	0	0	71551000	34153000	37398000	10698	1755	10130	66089	89140	89140			1	
EDIIQGFR	0	Unmodified	976.49779	0.49779495	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	4	3					3			2	3	3	2	50.882	48.894	2	0.00023496	44224	160511_QHF_FH_JSI11i_1	117.62	48.528			0.98907	1.014	8.9601	8	0	Median	1.1211	0.94415	9.5303	2	0	Median	0.85767	1.0261	0.093356	2	0	Median	0.98907	0.97675	5.8486	2	0	Median	0.99427	1.0598	16.708	2	0	Median	2709600000	1237800000	1471800000	694290000	286670000	407620000	688070000	344520000	343540000	877100000	383580000	493520000	450190000	223040000	227140000	10699	1024	10131	66090;66091;66092;66093;66094;66095;66096;66097;66098;66099	89141;89142;89143;89144;89145;89146;89147;89148;89149;89150;89151;89152;89153	89141			12	
EDIKPLK	2	Unmodified	841.49092	0.49091866	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	16.282	15.367	3	0.01021	12854	160511_QHF_FH_JSI10i_1	46.426	10.546			2.4966	2.697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4966	2.697	NaN	1	1	Median	44364000	18876000	25488000	0	0	0	0	0	0	0	0	0	44364000	18876000	25488000	10700	998	10132	66100;66101	89154;89155	89155			2	
EDILNYLEK	1	Unmodified	1135.5761	0.57610486	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.391	74.903	2	0.00079672	68075	160511_QHF_FH_JSI11i_1	83.499	48.23			0.96082	0.91369	15.945	4	0	Median	0.92699	0.74757	NaN	1	0	Median	0.69618	0.83618	NaN	1	0	Median	1.0281	0.99838	NaN	1	0	Median	0.99587	1.0564	NaN	1	0	Median	287610000	154060000	133550000	59390000	29290000	30099000	78691000	45528000	33163000	88410000	45843000	42567000	61119000	33394000	27725000	10701	991	10133	66102;66103;66104;66105	89156;89157;89158;89159;89160;89161	89156			6	
EDINAIEMEEDK	1	Unmodified	1434.6184	0.61843995	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			46.642	46.216	2	0.00018177	41585	160511_QHF_FH_JSI10i_1	80.69	61.945			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10702	1679	10134	66106	89162	89162			1	
EDINAIEMEEDKR	1	Unmodified	1590.7196	0.71955098	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	39.495	39.063	3	2.107E-05	35101	160511_QHF_FH_JSI10i_1	97.223	83.506			0.96594	0.93527	16.595	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66565	0.79717	NaN	1	0	Median	0.96594	0.93527	NaN	1	0	Median	1.0547	1.1109	NaN	1	0	Median	188910000	84001000	104910000	0	0	0	64345000	27083000	37263000	79046000	42047000	36999000	45520000	14871000	30649000	10703	1679	10135	66107;66108;66109	89163;89164;89165	89165			3	
EDINAIEMEEDKRDLISR	1	Unmodified	2175.0478	0.047761414	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	2	2		57.238	56.578	3;4	8.2749E-05	49979	160511_QHF_FH_JSI10i_2	80.609	55.02			1.12	1.2573	25.652	5	3	Median	1.6439	1.4056	NaN	1	0	Median	0.90851	1.0914	20.013	2	1	Median	1.4192	1.3872	38.919	2	2	Median	NaN	NaN	NaN	0	0	Median	133610000	55575000	78034000	21222000	6927800	14294000	49803000	23554000	26249000	62585000	25093000	37492000	0	0	0	10704	1679	10136	66110;66111;66112;66113;66114	89166;89167;89168;89169;89170	89169			5	
EDIPSEK	1	Unmodified	816.38651	0.38651317	2632	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	12.825	12.31	2	0.035447	9988	160511_QHF_FH_JSI10i_1	50.703	20.091			0.91933	0.88374	31.995	3	1	Median	1.0804	0.88374	NaN	1	0	Median	0.91933	1.0714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55073	0.57363	NaN	1	0	Median	353790000	189540000	164250000	128410000	60775000	67634000	105720000	55269000	50452000	0	0	0	119660000	73497000	46164000	10705	2632	10137	66115;66116;66117	89171;89172	89172			2	
EDIPVFK	1	Unmodified	846.44872	0.4487195	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.457	48.24	2	0.035052	42922	160511_QHF_FH_JSI9i_1	50.966	39.897			1.2754	1.076	NaN	1	1	Median	1.2754	1.076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30486000	18490000	11996000	30486000	18490000	11996000	0	0	0	0	0	0	0	0	0	10706	2535	10138	66118	89173	89173			1	
EDIPVNYMK	1	Unmodified	1107.527	0.52704617	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	48.384	47.442	2	0.00046326	42114	160511_QHF_FH_JSI9i_1	80.229	50.853			0.94413	0.86833	0.20243	2	0	Median	1.0504	0.86957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84863	0.86709	NaN	1	0	Median	153390000	79473000	73917000	67139000	32101000	35038000	0	0	0	0	0	0	86251000	47372000	38879000	10707	860	10139	66119;66120	89174	89174			1	
EDIQSVMTEIR	0	Unmodified	1319.6391	0.63911582	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	2	1	2	68.068	65.801	2	5.1395E-07	60191	160511_QHF_FH_JSI12i_1	120.63	63.901			1.2138	1.2589	26.185	6	4	Median	1.174	0.96654	NaN	1	1	Median	1.4618	1.6771	34.035	2	1	Median	1.2671	1.2306	NaN	1	0	Median	1.2084	1.2408	5.2515	2	2	Median	559740000	303260000	256480000	139820000	87586000	52238000	102800000	50612000	52184000	124520000	70157000	54365000	192590000	94904000	97690000	10708	1804	10140	66121;66122;66123;66124;66125;66126	89175;89176;89177;89178;89179;89180;89181	89178			7	
EDIQSVMTEIRR	0	Unmodified	1475.7402	0.74022685	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	3	2	2	59.22	58.443	2;3	5.6757E-06	51705	160511_QHF_FH_JSI10i_2	110.08	88.682			1.0768	1.1532	16.162	8	3	Median	1.3998	1.182	NaN	1	0	Median	1.0836	1.3071	11.964	3	2	Median	1.0797	1.0742	1.5153	2	1	Median	0.94598	1.0024	16.338	2	0	Median	1073200000	528190000	545030000	215920000	89221000	126700000	359780000	186750000	173030000	232600000	110290000	122320000	264920000	141930000	122990000	10709	1804	10141	66127;66128;66129;66130;66131;66132;66133;66134	89182;89183;89184;89185;89186;89187;89188;89189;89190;89191;89192	89190			11	
EDITQEFPGK	1	Unmodified	1162.5506	0.55061839	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	44.022	43.415	2	2.1264E-11	38578	160511_QHF_FH_JSI9i_1	152.11	125.94			0.71995	0.76023	28.266	5	2	Median	0.70144	0.5786	NaN	1	0	Median	0.66373	0.76965	NaN	1	0	Median	0.99701	0.97472	36.408	2	2	Median	0.71995	0.76023	NaN	1	0	Median	930710000	492870000	437840000	156320000	84633000	71688000	199190000	100740000	98451000	361160000	178740000	182420000	214040000	128750000	85284000	10710	2084	10142	66135;66136;66137;66138;66139	89193;89194;89195;89196;89197;89198;89199	89199			7	
EDITQSAQHALR	0	Unmodified	1367.6793	0.67934115	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.65	1	8					1			2	3	3	2	32.924	31.158	2;3	1.3286E-22	26505	160511_QHF_FH_JSI11i_2	179.42	150.73			0.9311	1.0822	25.758	10	2	Median	1.5942	1.3747	18.449	2	1	Median	0.92763	1.1216	30.606	3	1	Plateau	0.88931	0.90455	3.8012	3	0	Median	0.91548	1.0271	2.3433	2	0	Median	972150000	469540000	502610000	127090000	58369000	68722000	246690000	114670000	132020000	381490000	179050000	202440000	216870000	117450000	99422000	10711	2325	10143	66140;66141;66142;66143;66144;66145;66146;66147;66148;66149	89200;89201;89202;89203;89204;89205;89206;89207;89208;89209;89210;89211	89208			11	
EDIVPQLK	1	Unmodified	940.52295	0.52294707	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	47.937	46.996	2	0.0022477	42384	160511_QHF_FH_JSI10i_1	79.451	55.248			1.4575	1.3476	18.609	2	2	Median	1.445	1.1814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4702	1.5371	NaN	1	1	Median	283120000	126660000	156460000	127990000	57224000	70764000	0	0	0	0	0	0	155130000	69432000	85696000	10712	5161	10144	66150;66151;66152;66153;66154;66155;66156;66157;66158;66159	89212;89213;89214;89215;89216;89217;89218;89219;89220;89221	89219			10	
EDIYAVEIVGGATR	0	Unmodified	1491.7569	0.75692277	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	69.613	69.039	2;3	8.3275E-05	62675	160511_QHF_FH_JSI10i_1	62.035	57.84			0.84452	0.88667	14.465	7	1	Median	1.2106	1.0214	21.026	2	0	Median	0.65597	0.77705	6.9238	2	0	Median	0.95849	0.93103	NaN	1	0	Median	0.84147	0.89549	1.4001	2	1	Median	841390000	450190000	391200000	236520000	118210000	118310000	300110000	170060000	130050000	59297000	28192000	31105000	245470000	133730000	111740000	10713	1417	10145	66160;66161;66162;66163;66164;66165;66166	89222;89223;89224;89225;89226;89227;89228;89229;89230;89231	89228			10	
EDIYSGGGGGGSR	0	Unmodified	1210.5214	0.52144352	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	2	3	3	15.773	12.404	2	1.2659E-15	10922	160511_QHF_FH_JSI10i_1	164.97	151.93			0.93699	0.99263	7.2457	7	0	Median	1.2094	0.99263	NaN	1	0	Median	0.92143	1.097	4.2105	2	0	Median	1.0463	1.0188	6.8116	2	0	Median	0.87499	0.93999	2.72	2	0	Median	2382000000	1182000000	1200000000	457410000	210560000	246840000	680150000	380170000	299980000	627580000	311600000	315980000	616840000	279690000	337150000	10714	2361	10146	66167;66168;66169;66170;66171;66172;66173;66174;66175	89232;89233;89234;89235;89236;89237;89238;89239;89240;89241;89242;89243;89244;89245	89237			14	
EDKGEDSEPVTSK	2	Unmodified	1419.6365	0.63653286	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	8.1473	7.7979	3	0.027462	5407	160511_QHF_FH_JSI9i_1	59.607	46.84			0.76456	0.81841	19.19	4	0	Median	1.2143	0.99147	NaN	1	0	Median	0.64875	0.7639	NaN	1	0	Median	0.90104	0.87681	NaN	1	0	Median	0.60214	0.63399	NaN	1	0	Median	925390000	506370000	419010000	223220000	99572000	123640000	255340000	150020000	105320000	219490000	136790000	82701000	227340000	119980000	107350000	10715	3570	10147	66176;66177;66178;66179	89246;89247	89247			0	
EDKLECSEELGDLVK	2	Unmodified	1762.8295	0.82949536	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	58.847	58.381	2;3	0.00062132	52735	160511_QHF_FH_JSI10i_1	108.59	84.845			1.1975	1.3136	22.994	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2191	1.4343	13.408	2	1	Median	0.95671	0.91159	NaN	1	0	Median	1.2804	1.3227	NaN	1	1	Median	150110000	67162000	82951000	0	0	0	91155000	42492000	48664000	39808000	18599000	21209000	19149000	6071500	13078000	10716	1807;2155	10148	66180;66181;66182;66183	89248;89249;89250;89251;89252	89251			5	
EDKYEEEIK	2	Unmodified	1181.5452	0.54519866	73;2069;886;858	P06753;CON__Q3SX28;P07951;P67936	TPM3;TPM2;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	4.02	8	6				1	1			4	4	4	4	18.751	17.273	2;3	0.00023646	10741	160513_QHF_FH_JSI12Kac_4	80.102	55.247		+	0.95664	0.9763	14.57	16	0	Median	1.0391	0.87466	7.8979	4	0	Median	0.82527	0.98612	3.5117	4	0	Median	1.0709	1.0315	20.416	4	0	Median	0.8724	0.95418	15.029	4	0	Median	12695000000	6510400000	6184200000	2590100000	911320000	1678800000	3442800000	2095100000	1347700000	2928700000	1679900000	1248800000	3733100000	1824100000	1909000000	10717	858;73;886;2069	10149	66184;66185;66186;66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198;66199	89253;89254;89255;89256;89257;89258;89259;89260;89261;89262;89263;89264;89265;89266;89267;89268;89269;89270;89271;89272;89273;89274;89275;89276;89277	89273			25	
EDKYEEEIK	2	Acetyl (K)	1223.5558	0.55576334	73;2069;886;858	P06753;CON__Q3SX28;P07951;P67936	TPM3;TPM2;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4				1	2	2	2	39.229	30.42	2	6.8064E-11	17543	160513_QHF_FH_JSI11Kac_3	153.97	122.9		+	0.8095	0.86908	43.016	6	0	Median	NaN	NaN	NaN	0	0	Median	0.89767	1.0708	2.4694	2	0	Median	0.4332	0.42808	2.2399	2	0	Median	0.8095	0.86908	2.0137	2	0	Median	106430000	66894000	39536000	0	0	0	22661000	11190000	11471000	49645000	36890000	12755000	34124000	18814000	15310000	10718	858;73;886;2069	10149	66200;66201;66202;66203;66204;66205;66206	89278;89279;89280;89281;89282;89283;89284	89278	47		7	
EDLAAFVEELDK	1	Unmodified	1377.6664	0.66637643	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	97.96	97.864	2	2.3434E-05	88888	160511_QHF_FH_JSI11i_1	88.441	70.129			0.75099	0.81064	14.285	2	2	Median	NaN	NaN	NaN	0	0	Median	0.79512	0.8968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70932	0.73275	NaN	1	1	Median	39788000	26067000	13721000	0	0	0	20638000	14034000	6603800	0	0	0	19151000	12033000	7117600	10719	2197	10150	66207;66208;66209	89285;89286;89287	89285			3	
EDLAIQK	1	Unmodified	815.43888	0.43888309	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.958	21.682	2	0.031164	18784	160511_QHF_FH_JSI10i_1	53.554	0			1.3761	1.5991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3761	1.5991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69509000	31807000	37701000	0	0	0	69509000	31807000	37701000	0	0	0	0	0	0	10720	4262	10151	66210	89288	89288			1	
EDLATFIEELEAVEAK	1	Unmodified	1805.8935	0.89347583	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	102.7	102.6	3	6.1574E-08	90427	160511_QHF_FH_JSI11i_2	130.47	116.21			1.0882	1.0891	31.938	5	4	Median	0.69279	0.61166	NaN	1	0	Median	0.63797	0.79328	NaN	1	1	Median	1.1798	1.1913	12.683	2	2	Median	1.1333	1.2249	NaN	1	1	Median	187370000	92279000	95093000	16506000	10794000	5712500	22004000	14836000	7168200	117450000	54410000	63037000	31415000	12240000	19176000	10721	999	10152	66211;66212;66213;66214;66215	89289;89290;89291;89292;89293	89292			5	
EDLDLPNHLVGLK	1	Unmodified	1461.7827	0.78274359	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.847	69.55	3	0.0058753	60042	160511_QHF_FH_JSI12i_2	41.401	28.42			0.76574	0.85753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76574	0.85753	NaN	1	0	Median	11562000	7044400	4517800	0	0	0	0	0	0	0	0	0	11562000	7044400	4517800	10722	2257	10153	66216	89294;89295	89295			2	
EDLELIMTEMEISR	0	Unmodified	1707.8059	0.80592315	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	99.312	99.194	2	0.00052165	87122	160511_QHF_FH_JSI9i_2	92.866	57.452			1.0865	1.0577	39.934	3	3	Median	1.1587	0.9928	56.239	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0865	1.0577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23623000	12532000	11091000	13926000	7172800	6753500	0	0	0	9696800	5359200	4337600	0	0	0	10723	5093	10154	66217;66218;66219;66220	89296;89297;89298;89299	89298			4	
EDLHDMLASLGK	1	Unmodified	1327.6442	0.6442012	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.567	2	6	1							1	3	3	2	80.661	79.972	2;3	1.5057E-06	69050	160511_QHF_FH_JSI12i_2	102.87	92.821			1.1726	1.156	52.919	8	2	Median	1.4105	1.2414	NaN	1	0	Median	1.3497	1.5195	64.912	3	1	Median	1.355	1.3437	35.369	2	0	Median	0.72385	0.79007	36.825	2	1	Median	1015200000	396910000	618260000	128640000	46713000	81928000	475020000	146610000	328420000	180820000	87851000	92967000	230690000	115740000	114950000	10724	223;1151	10155	66221;66222;66223;66224;66225;66226;66227;66228;66229	89300;89301;89302;89303;89304;89305;89306;89307;89308;89309;89310;89311;89312;89313;89314	89303			15	
EDLIREER	0	Unmodified	1058.5356	0.53563702	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	17.277	16.573	2	0.041902	13284	160511_QHF_FH_JSI11i_2	63.534	26.513			0.97792	1.1581	15.02	4	0	Median	1.5618	1.3354	NaN	1	0	Median	0.92324	1.1281	NaN	1	0	Median	0.91648	0.93142	NaN	1	0	Median	1.0358	1.1888	NaN	1	0	Median	221170000	115020000	106150000	39017000	18392000	20625000	43757000	25584000	18174000	84427000	42522000	41906000	53967000	28525000	25442000	10725	552	10156	66230;66231;66232;66233	89315	89315			1	
EDLLDQLK	1	Unmodified	972.51278	0.51277632	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.868	62.234	2	0.0016363	56404	160511_QHF_FH_JSI11i_1	86.833	21.795			0.87948	0.86109	9.8835	4	0	Median	0.98097	0.80246	NaN	1	0	Median	0.86916	1.0131	NaN	1	0	Median	0.88992	0.86374	NaN	1	0	Median	0.84033	0.85846	NaN	1	0	Median	296340000	148390000	147950000	67678000	31963000	35715000	68772000	36489000	32283000	74143000	36914000	37228000	85751000	43028000	42723000	10726	264	10157	66234;66235;66236;66237	89316;89317;89318;89319;89320;89321;89322;89323	89317			8	
EDLLQHFSTANQGPK	1	Unmodified	1683.8216	0.82164829	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.31	51.783	3	0.010382	44669	160511_QHF_FH_JSI11i_2	45.084	33.645			0.79794	0.80578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79794	0.80578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70478000	33987000	36491000	0	0	0	0	0	0	70478000	33987000	36491000	0	0	0	10727	5220	10158	66238	89324	89324			1	
EDLNCQEEEDPMNK	1	Unmodified	1749.6822	0.6821792	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.757	32.156	2	2.1989E-21	28866	160511_QHF_FH_JSI12i_1	174.68	140.79			1.0359	0.95882	26.004	4	0	Median	1.0135	0.85501	NaN	1	0	Median	1.0588	1.2302	NaN	1	0	Median	1.1427	1.0752	NaN	1	0	Median	0.66185	0.68146	NaN	1	0	Median	181090000	89754000	91331000	30497000	16711000	13787000	49262000	27242000	22019000	66732000	28741000	37990000	34595000	17060000	17535000	10728	570	10159	66239;66240;66241;66242	89325;89326;89327;89328;89329	89327			5	
EDLNGPFLNQLETDPSLDMK	1	Unmodified	2275.0678	0.067828154	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	94.831	94.436	2;3	5.0333E-68	85902	160511_QHF_FH_JSI11i_1	236.17	214.3			0.89131	0.99423	20.148	7	2	Median	1.3911	1.1359	18.839	2	1	Median	0.8877	1.0365	NaN	1	0	Median	0.88965	0.86079	2.2183	2	0	Median	1.0842	1.1273	32.825	2	1	Median	247110000	117590000	129510000	35231000	15129000	20102000	41025000	16537000	24488000	79854000	45759000	34096000	90995000	40169000	50826000	10729	5474	10160	66243;66244;66245;66246;66247;66248;66249;66250	89330;89331;89332;89333;89334;89335;89336;89337;89338;89339;89340;89341	89332			12	
EDLNVNEVFK	1	Unmodified	1205.5928	0.59281755	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.213	60.776	2	0.0047089	55201	160511_QHF_FH_JSI11i_1	64.841	35.883			3.1108	2.9677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1108	2.9677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38756000	11789000	26967000	0	0	0	0	0	0	38756000	11789000	26967000	0	0	0	10730	5394	10161	66251	89342	89342			1	
EDLPAENGETK	1	Unmodified	1201.5463	0.54626129	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	20.749	17.391	2	3.895E-07	14859	160511_QHF_FH_JSI11i_1	118.03	79.258			1.0243	1.1009	21.554	7	3	Median	1.8384	1.5059	NaN	1	1	Median	0.823	0.95885	11.398	2	1	Median	1.4686	1.4367	3.1531	2	0	Median	0.97509	1.0351	8.7114	2	1	Median	1125900000	474870000	651060000	312320000	124330000	187990000	231080000	121910000	109170000	275040000	112820000	162220000	307490000	115810000	191680000	10731	825	10162	66252;66253;66254;66255;66256;66257;66258	89343;89344;89345;89346;89347;89348;89349;89350;89351;89352	89344			10	
EDLPAENGETKTEESPASDEAGEK	2	Unmodified	2532.0987	0.098730169	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.511	28.916	3	6.1947E-29	25621	160511_QHF_FH_JSI10i_1	167.73	140.46			1.2021	1.184	29.153	4	1	Median	1.0356	0.84936	NaN	1	0	Median	0.83144	0.97815	NaN	1	0	Median	1.5849	1.5503	NaN	1	1	Median	1.3955	1.4332	NaN	1	0	Median	364920000	171090000	193840000	72152000	36493000	35659000	90120000	46540000	43580000	85212000	30619000	54593000	117440000	57433000	60006000	10732	825	10163	66259;66260;66261;66262	89353;89354;89355;89356;89357;89358;89359;89360;89361;89362	89358			10	
EDLQELNDR	0	Unmodified	1130.5204	0.52038089	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				2	3	2	3	30.426	24.087	2	2.7999E-31	23894	160511_QHF_FH_JSI10i_1	199.46	154.38			1.0618	1.0665	7.3955	10	0	Median	1.3483	1.1158	4.9961	2	0	Median	0.77875	0.97441	4.2453	3	0	Plateau	1.0742	1.0546	1.9782	2	0	Median	1.0614	1.1456	4.6873	3	0	Median	11207000000	4911800000	6294900000	2629600000	976600000	1653000000	3106600000	1534900000	1571600000	2967800000	1303200000	1664600000	2502700000	1097100000	1405700000	10733	791	10164	66263;66264;66265;66266;66267;66268;66269;66270;66271;66272	89363;89364;89365;89366;89367;89368;89369;89370;89371;89372;89373;89374;89375;89376;89377;89378;89379;89380	89370			18	
EDLQEVDGEIEAVLQK	1	Unmodified	1813.8945	0.89453846	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	99.411	99.275	3	0.00018093	90122	160511_QHF_FH_JSI11i_1	75.463	67.487			0.65239	0.73127	6.2801	4	2	Linear	0.992	0.81606	NaN	1	1	Median	0.64637	0.7407	NaN	1	0	Median	0.74169	0.72196	NaN	1	1	Median	0.70578	0.70855	NaN	1	0	Median	93271000	50510000	42762000	9803400	5576700	4226700	29560000	17258000	12302000	26242000	12360000	13882000	27666000	15315000	12351000	10734	285	10165	66273;66274;66275;66276	89381;89382;89383;89384	89381			4	
EDLRKFKDAK	3	Acetyl (K)	1290.6932	0.6932003	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	1	0	0	3				By MS/MS	14	0							1						1	74.704	64.1	2	0.039543	34461	160513_QHF_FH_JSI12Kac_4	47.823	33.157			1.3117	1.4532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3117	1.4532	NaN	1	0	Median	28596000	10791000	17805000	0	0	0	0	0	0	0	0	0	28596000	10791000	17805000	10735	2620	10166	66277	89385	89385			0	
EDLRLPEGDLGK	1	Unmodified	1340.6936	0.69359423	2060	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.93	8	8	1				2	2	2	6	6	4	7	52.719	49.388	2;3	2.9077E-08	44674	160511_QHF_FH_JSI10i_1	138.42	115.82			0.95347	0.94823	10.12	23	0	Median	1.0544	0.88262	7.7746	6	0	Median	0.81439	0.98723	10.836	6	0	Median	0.92336	0.91136	5.2196	4	0	Median	0.943	1.0194	10.731	7	0	Median	17325000000	8978300000	8346200000	3991800000	1859000000	2132900000	4380500000	2439200000	1941300000	5586000000	2996500000	2589500000	3366200000	1683600000	1682600000	10736	2060	10167	66278;66279;66280;66281;66282;66283;66284;66285;66286;66287;66288;66289;66290;66291;66292;66293;66294;66295;66296;66297;66298;66299;66300	89386;89387;89388;89389;89390;89391;89392;89393;89394;89395;89396;89397;89398;89399;89400;89401;89402;89403;89404;89405;89406;89407;89408;89409;89410;89411;89412;89413;89414;89415;89416;89417;89418;89419;89420;89421;89422;89423;89424;89425;89426;89427;89428;89429;89430;89431;89432	89406			47	
EDLRPSAPQQEGEASK	1	Unmodified	1740.8279	0.82785588	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.98	8	2				3				3	4	3	3	22.076	19.854	2;3	5.9589E-06	17138	160511_QHF_FH_JSI12i_1	118.53	105.39			0.94681	1.11	34.979	13	0	Median	0.82881	0.67645	8.8256	3	0	Median	0.77094	0.91899	11.472	4	0	Median	1.3049	1.267	10.762	3	0	Median	1.111	1.1826	33.969	3	0	Median	4732500000	2375100000	2357400000	1096600000	570990000	525570000	1086800000	623900000	462950000	1071300000	520390000	550910000	1477700000	659800000	817950000	10737	599	10168	66301;66302;66303;66304;66305;66306;66307;66308;66309;66310;66311;66312;66313	89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444;89445;89446;89447;89448;89449;89450;89451;89452;89453;89454;89455;89456;89457;89458	89438			26	
EDLRSWTAADMAAQTTK	1	Unmodified	1893.8891	0.88907593	788;967	P10316;P01892;P01891	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	57.458	56.659	3	7.2499E-06	48781	160511_QHF_FH_JSI12i_3	95.094	79.94			1.19	1.318	18.778	5	1	Median	1.279	1.1151	NaN	1	0	Median	1.19	1.4738	NaN	1	0	Median	1.5425	1.519	NaN	1	1	Median	1.074	1.1349	21.158	2	0	Median	436460000	203550000	232910000	57030000	27339000	29691000	94601000	49793000	44808000	65299000	17836000	47463000	219530000	108580000	110950000	10738	967;788	10169	66314;66315;66316;66317;66318;66319	89459;89460;89461;89462;89463;89464;89465;89466;89467	89467			9	
EDLRVLMEK	1	Unmodified	1131.5958	0.59579444	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	50.191	49.015	3	0.0044418	43120	160511_QHF_FH_JSI10i_2	56.359	49.231			1.2348	1.4239	111.26	2	1	Median	NaN	NaN	NaN	0	0	Median	2.5726	3.127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59266	0.64837	NaN	1	0	Median	99086000	49315000	49771000	0	0	0	37113000	13294000	23818000	0	0	0	61973000	36021000	25953000	10739	1923	10170	66320;66321	89468;89469;89470	89470			3	
EDLSGIAEMFK	1	Unmodified	1238.5853	0.58528933	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	87.818	87.374	2	1.5715E-07	77837	160511_QHF_FH_JSI9i_1	123.63	102.72			0.9528	1.3076	59.651	5	0	Linear	0.57579	0.50092	68.325	2	0	Median	0.89512	1.0416	NaN	1	0	Median	1.5007	1.4271	NaN	1	0	Median	1.0768	1.143	NaN	1	0	Median	193680000	94507000	99176000	41837000	23925000	17912000	39950000	19179000	20770000	62435000	26530000	35904000	49461000	24872000	24589000	10740	1576	10171	66322;66323;66324;66325;66326	89471;89472;89473;89474;89475;89476;89477	89476			7	
EDLSGTQAGLNVIK	1	Unmodified	1443.7569	0.75692277	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.4	4.8	4					1				1		1	3	57.621	55.196	2	2.9236E-81	49858	160511_QHF_FH_JSI11i_1	249.22	225.79			1.3183	1.2302	17.802	5	3	Median	1.3183	1.079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4901	1.4275	NaN	1	0	Median	1.4045	1.4385	20.113	3	2	Plateau	489890000	212790000	277100000	91775000	42714000	49061000	0	0	0	149900000	59834000	90069000	248210000	110240000	137970000	10741	1888	10172	66327;66328;66329;66330;66331	89478;89479;89480;89481;89482;89483	89478			6	
EDLTEIR	0	Unmodified	874.43961	0.43961137	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.98	6					5				4	2	3	2	29.403	22.261	2	4.3214E-09	6176	160513_QHF_FH_JSI9Kac_3	157.86	65.673			1.072	0.93612	40.711	9	5	Median	1.3234	1.0169	17.482	3	2	Median	0.78951	0.9337	0.36548	2	1	Median	0.90142	0.87822	22.19	2	1	Median	1.4331	1.5604	90.35	2	1	Median	4383400000	1340600000	3042900000	860560000	296050000	564510000	829630000	321880000	507750000	1111400000	384860000	726530000	1581800000	337770000	1244100000	10742	837	10173	66332;66333;66334;66335;66336;66337;66338;66339;66340;66341;66342	89484;89485;89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497	89491			14	
EDLTEIRDMLLANK	1	Oxidation (M)	1675.8451	0.84508585	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	1	1	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	76.457	75.907	3	0.0021325	66042	160511_QHF_FH_JSI12i_3	66.285	54.517			0.85058	0.92591	5.6007	6	1	Median	1.0866	0.94682	NaN	1	0	Median	0.76792	0.93743	NaN	1	0	Median	1.035	0.99103	NaN	1	0	Median	0.81976	0.84371	4.0575	3	1	Plateau	477400000	286400000	191000000	48790000	24612000	24178000	83887000	64064000	19823000	61644000	29149000	32495000	283080000	168570000	114500000	10743	837	10174	66343;66344;66345;66346;66347;66348	89498;89499;89500	89500		355	3	
EDLTEIRDMLLANK	1	Unmodified	1659.8502	0.85017123	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							3	4	5	4	88.524	88.028	2;3	6.1417E-51	76456	160511_QHF_FH_JSI12i_3	213.63	183.7			0.98277	1.0384	8.2185	16	0	Median	1.3996	1.1543	15.962	3	0	Plateau	0.88638	1.0906	0.38218	4	0	Linear	0.98824	0.99621	5.9489	5	0	Median	0.96416	1.0327	4.0815	4	0	Median	8093900000	3547100000	4546900000	1452500000	493330000	959140000	1437200000	695370000	741800000	1824400000	836900000	987530000	3379900000	1521500000	1858400000	10744	837	10174	66349;66350;66351;66352;66353;66354;66355;66356;66357;66358;66359;66360;66361;66362;66363;66364	89501;89502;89503;89504;89505;89506;89507;89508;89509;89510;89511;89512;89513;89514;89515;89516;89517;89518;89519;89520;89521;89522;89523;89524;89525;89526;89527;89528;89529;89530;89531;89532;89533;89534;89535;89536;89537;89538;89539;89540;89541;89542;89543;89544	89544			44	
EDLTMFVK	1	Unmodified	981.48412	0.48411873	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.419	60.982	2	0.02783	55245	160511_QHF_FH_JSI11i_1	51.059	38.471			1.0445	1.0249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0445	1.0249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44172000	27132000	17040000	0	0	0	0	0	0	44172000	27132000	17040000	0	0	0	10745	3407	10175	66365	89545	89545			1	
EDLVFIFWAPESAPLK	1	Unmodified	1860.9662	0.96618726	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		8	6						8	5	5	6	6	100.49	97.381	2;3	2.9104E-88	48119	160513_QHF_FH_JSI12Kac_6	237.49	208.19			0.90207	0.94123	12.376	22	2	Median	1.1783	1.0005	11.46	5	0	Median	0.8197	0.97014	12.625	5	1	Median	0.96477	0.94677	14.372	6	1	Median	0.85407	0.91787	10.441	6	0	Median	9842400000	4887200000	4955200000	2419600000	1076000000	1343700000	2541500000	1330400000	1211100000	2986000000	1471400000	1514600000	1895200000	1009400000	885780000	10746	1236;5500	10176	66366;66367;66368;66369;66370;66371;66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382;66383;66384;66385;66386;66387	89546;89547;89548;89549;89550;89551;89552;89553;89554;89555;89556;89557;89558;89559;89560;89561;89562;89563;89564;89565;89566;89567;89568;89569;89570;89571;89572;89573;89574;89575;89576;89577;89578;89579;89580;89581;89582;89583;89584;89585;89586	89580			41	
EDLVVAPAGITLK	1	Unmodified	1324.7602	0.76021723	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.477	75.304	2	0.0047926	68197	160511_QHF_FH_JSI10i_1	62.408	29.993			0.72411	0.82328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72411	0.82328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21022000	17461000	3561300	0	0	0	21022000	17461000	3561300	0	0	0	0	0	0	10747	1015	10177	66388	89587	89587			1	
EDLYLKPIQR	1	Unmodified	1273.703	0.7030367	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	4	8	6							3	4	6	5	43.378	42.649	2;3	4.6317E-18	36673	160511_QHF_FH_JSI11i_2	174.02	153.15			0.94262	0.96516	8.994	18	0	Median	1.2367	1.1092	8.6907	3	0	Plateau	0.91656	1.1303	9.7967	4	0	Linear	0.97317	0.9552	5.9285	6	0	Median	0.85918	0.96636	10.898	5	0	Median	7516400000	3579200000	3937300000	944210000	399010000	545200000	1750800000	887400000	863370000	2692800000	1265400000	1427400000	2128600000	1027400000	1101300000	10748	1033	10178	66389;66390;66391;66392;66393;66394;66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406	89588;89589;89590;89591;89592;89593;89594;89595;89596;89597;89598;89599;89600;89601;89602;89603;89604;89605;89606;89607;89608;89609;89610;89611;89612;89613;89614;89615;89616;89617;89618;89619	89611			32	
EDLYLKPIQR	1	Acetyl (K)	1315.7136	0.71360139	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.7						3	3	1			2	3	2	70.631	60.476	2	2.5431E-17	32469	160513_QHF_FH_JSI12Kac_4	168.27	139.1			0.82443	0.90517	46.308	7	0	Median	NaN	NaN	NaN	0	0	Median	0.96743	1.1569	8.9598	2	0	Median	0.55371	0.53735	16.48	3	0	Plateau	0.83255	0.91089	0.8908	2	0	Median	229510000	138990000	90517000	0	0	0	94947000	53238000	41709000	62094000	42372000	19722000	72469000	43383000	29086000	10749	1033	10178	66407;66408;66409;66410;66411;66412;66413	89620;89621;89622;89623;89624;89625;89626;89627;89628;89629	89628	849		10	
EDMAALEK	1	Unmodified	905.41643	0.41643309	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.85	5				1	3				1	2	3	3	28.831	24.704	2	0.00056507	21730	160511_QHF_FH_JSI10i_1	104.06	60.991			0.8237	0.80527	55.132	9	2	Median	0.95497	0.79924	NaN	1	0	Median	0.92372	1.1008	40.885	2	0	Median	0.8237	0.80527	44.002	3	0	Plateau	0.84408	0.92345	85.698	3	2	Median	9424700000	5071500000	4353300000	2304900000	1086800000	1218000000	1993000000	1102900000	890120000	2111100000	1153100000	958050000	3015700000	1728700000	1287100000	10750	2073;2074;4359	10179	66414;66415;66416;66417;66418;66419;66420;66421;66422	89630;89631;89632;89633;89634;89635;89636;89637;89638;89639	89636			10	
EDMAALEK	1	Oxidation (M)	921.41135	0.41134771	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	7	6	2					2				1	1	1	1	20.071	16.094	2	0.017035	6030	160513_QHF_FH_JSI12Kac_3	71.692	36.198			1.6789	1.5062	98.579	4	2	Median	1.4895	1.2185	NaN	1	0	Median	0.22941	0.26822	NaN	1	0	Median	1.8923	1.8618	NaN	1	1	Median	2.2647	2.4425	NaN	1	1	Median	971110000	566040000	405080000	600230000	302540000	297690000	348030000	253460000	94568000	16340000	7702700	8637400	6514500	2332200	4182300	10751	2073;2074;4359	10179	66423;66424;66425;66426	89640;89641;89642	89642		1738	3	
EDMAVHVR	0	Unmodified	955.45455	0.45454993	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	16.699	16.018	2	0.0011352	13020	160511_QHF_FH_JSI12i_2	93.561	74.084			0.95129	1.1343	28.782	3	0	Plateau	0.95129	0.85289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89616	0.89574	NaN	1	0	Median	1.3336	1.4363	NaN	1	0	Median	149620000	74716000	74900000	36233000	17060000	19173000	0	0	0	56686000	28320000	28366000	56697000	29336000	27360000	10752	3290	10180	66427;66428;66429	89643;89644;89645;89646;89647;89648	89644			6	
EDMESVLDK	1	Unmodified	1064.4696	0.46959087	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.322	42.105	2	0.0057136	37346	160511_QHF_FH_JSI9i_1	63.816	45.831			2.4307	1.9695	NaN	1	1	Median	2.4307	1.9695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20774000	4405400	16368000	20774000	4405400	16368000	0	0	0	0	0	0	0	0	0	10753	899	10181	66430	89649	89649			1	
EDMEYALR	0	Unmodified	1025.4488	0.44879585	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	35.633	35.233	2	0.0087012	31753	160511_QHF_FH_JSI12i_1	56.721	36.166			0.88752	0.86844	14.421	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65968	0.76601	NaN	1	0	Median	0.88752	0.86844	NaN	1	0	Median	0.98638	1.0213	NaN	1	0	Median	205080000	119930000	85146000	0	0	0	70254000	44887000	25367000	83476000	47073000	36402000	51349000	27972000	23377000	10754	2376	10182	66431;66432;66433	89650	89650			1	
EDMTYAVR	0	Unmodified	983.43823	0.43823117	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.415	24.852	2	0.00013311	21385	160511_QHF_FH_JSI9i_1	126.28	100.45			0.95526	0.94454	11.222	4	0	Median	1.1687	0.96408	NaN	1	0	Median	0.78196	0.92541	NaN	1	0	Median	1.1446	1.1128	NaN	1	0	Median	0.79724	0.8507	NaN	1	0	Median	2383700000	1086200000	1297500000	473810000	171610000	302210000	556540000	256850000	299690000	682120000	309050000	373070000	671240000	348670000	322570000	10755	2260	10183	66434;66435;66436;66437	89651;89652;89653;89654;89655;89656;89657	89657			7	
EDNGIGILTLNNPSR	0	Unmodified	1611.8216	0.82164829	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	67.971	67.39	2	1.3725E-06	59894	160511_QHF_FH_JSI9i_1	145.81	122.9			0.81485	0.7201	23.24	7	7	Median	0.94467	0.78901	12.925	2	2	Median	0.69559	0.8001	21.58	2	2	Median	0.78411	0.7578	15.984	2	2	Median	0.44527	0.46483	NaN	1	1	Median	247170000	134800000	112370000	62305000	29362000	32943000	74509000	40900000	33609000	81013000	43974000	37039000	29343000	20568000	8774900	10756	4995	10184	66438;66439;66440;66441;66442;66443;66444	89658;89659;89660;89661;89662;89663;89664	89664			7	
EDNIQAK	1	Unmodified	816.39775	0.39774656	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.159	5.8129	2	0.022384	3825	160511_QHF_FH_JSI12i_1	56.091	22.278			0.7043	0.72047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7043	0.72047	NaN	1	0	Median	67339000	39392000	27947000	0	0	0	0	0	0	0	0	0	67339000	39392000	27947000	10757	2831	10185	66445	89665	89665			1	
EDNYRGPAVR	0	Unmodified	1175.5683	0.56833414	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							2		1	1	12.028	11.745	2;3	0.0139	9490	160511_QHF_FH_JSI9i_2	39.213	27.05			1.0922	0.98916	10.919	4	0	Median	1.2397	1.0843	7.1615	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0077	0.94921	NaN	1	0	Median	0.87798	0.88528	NaN	1	0	Median	343840000	154380000	189460000	137070000	53542000	83532000	0	0	0	123000000	57906000	65090000	83774000	42936000	40838000	10758	5708	10186	66446;66447;66448;66449	89666;89667;89668;89669	89668			4	
EDPDMASAVAAIR	0	Unmodified	1344.6344	0.63436479	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.026	58.922	2	0.0099977	52169	160511_QHF_FH_JSI9i_1	57.39	23.434			0.75249	0.60374	NaN	1	1	Median	0.75249	0.60374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	255990000	143460000	112530000	255990000	143460000	112530000	0	0	0	0	0	0	0	0	0	10759	2518	10187	66450	89670	89670			1	
EDPEPSTDGTYVWK	1	Unmodified	1622.71	0.71003215	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	1	2	50.337	49.66	2	1.7371E-06	44955	160511_QHF_FH_JSI11i_1	131.83	106.99			1.0187	1.092	27.832	4	0	Median	0.79538	0.64708	NaN	1	0	Median	1.0159	1.1832	NaN	1	0	Median	1.1748	1.1189	NaN	1	0	Median	1.0215	1.0658	NaN	1	0	Median	363800000	171090000	192710000	48376000	28212000	20164000	105420000	54120000	51304000	106480000	38232000	68244000	103530000	50530000	52999000	10760	5300	10188	66451;66452;66453;66454;66455;66456	89671;89672;89673;89674;89675;89676;89677;89678;89679;89680	89672			10	
EDPFVFIPEDDPLFPPIEK	1	Unmodified	2243.1038	0.10380295	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	102.25	102.13	2;3	2.0553E-08	92887	160511_QHF_FH_JSI11i_1	109.07	68.496			0.74903	0.83237	34.861	7	3	Median	0.76904	0.63784	37.647	2	1	Median	0.74903	0.87235	NaN	1	0	Median	0.94118	0.92494	38.146	2	1	Median	0.58457	0.61446	45.007	2	1	Median	1340200000	842330000	497820000	182390000	105010000	77384000	338760000	231170000	107590000	348750000	184850000	163900000	470250000	321300000	148960000	10761	2282	10189	66457;66458;66459;66460;66461;66462;66463	89681;89682;89683;89684;89685;89686;89687	89681			7	
EDPNLVPSISNK	1	Unmodified	1311.667	0.66704513	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.525	48.846	2	0.00029335	44057	160511_QHF_FH_JSI11i_1	74.611	66.781			0.77455	0.77782	9.9899	4	1	Median	0.87639	0.70163	NaN	1	0	Median	0.75418	0.89468	NaN	1	0	Median	0.79546	0.77356	NaN	1	0	Median	0.73783	0.7821	NaN	1	1	Median	973720000	531820000	441900000	252780000	123140000	129630000	217930000	125040000	92898000	296710000	171980000	124730000	206290000	111660000	94637000	10762	974	10190	66464;66465;66466;66467	89688;89689;89690;89691;89692;89693	89688			6	
EDPTVSALLTSEK	1	Unmodified	1388.7035	0.70349021	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	63.618	62.106	2;3	6.9763E-53	56320	160511_QHF_FH_JSI12i_1	217.83	198.85			1.0555	1.0653	18.696	9	0	Median	1.1995	0.96577	14.804	2	0	Median	0.90087	1.0633	16.526	2	0	Median	0.9936	0.96234	14.373	2	0	Median	0.86756	0.92287	27.292	3	0	Plateau	4224300000	2103300000	2121000000	1145000000	484640000	660370000	1056600000	622250000	434390000	991860000	477940000	513920000	1030800000	518460000	512350000	10763	2093	10191	66468;66469;66470;66471;66472;66473;66474;66475;66476	89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704;89705;89706;89707;89708	89699			15	
EDQFQLSLLAAMGNTQR	0	Unmodified	1920.9364	0.93636047	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.17	0.373	5	1									4		2	95.918	95.848	2;3	1.1044E-06	84744	160511_QHF_FH_JSI10i_2	88.087	73.929			0.54144	0.63512	34.837	3	3	Median	NaN	NaN	NaN	0	0	Median	0.5757	0.67439	8.4855	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37684	0.3722	NaN	1	1	Median	65211000	39349000	25862000	0	0	0	52851000	30188000	22663000	0	0	0	12360000	9161300	3198600	10764	1804	10192	66477;66478;66479;66480;66481;66482	89709;89710;89711;89712;89713;89714;89715	89715			7	
EDQFQLSLLAAMGNTQRK	1	Unmodified	2049.0313	0.031323489	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	84.663	84.402	3	0.00095018	73192	160511_QHF_FH_JSI12i_3	48.907	39.644			0.94347	1.0431	5.4964	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85728	1.0431	NaN	1	0	Median	1.1487	1.0658	NaN	1	0	Median	0.94347	0.96041	NaN	1	0	Median	82326000	42857000	39469000	0	0	0	21084000	10818000	10266000	27656000	12627000	15028000	33587000	19412000	14174000	10765	1804	10193	66483;66484;66485	89716;89717;89718	89718			3	
EDQLEYQEEMK	1	Unmodified	1440.6079	0.60787527	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		35.027	34.78	2	0.0091324	31075	160511_QHF_FH_JSI11i_1	58.699	48.745			6.0053	5.5691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.0053	5.5691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68430000	11337000	57094000	0	0	0	0	0	0	68430000	11337000	57094000	0	0	0	10766	4555	10194	66486	89719	89719			1	
EDQPAVPGETQGDSYFTGK	1	Unmodified	2024.8963	0.89632937	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	53.077	52.584	2	1.0733E-05	47356	160511_QHF_FH_JSI10i_1	96.591	56.674			0.92314	1.0499	15.595	3	3	Median	NaN	NaN	NaN	0	0	Median	0.92314	1.0499	NaN	1	1	Median	1.2524	1.2155	NaN	1	1	Median	0.88624	0.88996	NaN	1	1	Median	50684000	30036000	20648000	0	0	0	17684000	10684000	7000500	15719000	9238400	6480600	17281000	10114000	7167200	10767	5451	10195	66487;66488;66489	89720;89721;89722	89722			3	
EDQSETTSEVVERR	0	Unmodified	1663.7649	0.76492127	5796				yes	yes	0	0	0	1	By MS/MS				1	0	1									1				40.938	39.726	2	0.0020113	35161	160511_QHF_FH_JSI9i_1	81.017	57.166	+		2.1836	1.787	NaN	1	1	Median	2.1836	1.787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91704000	45927000	45777000	91704000	45927000	45777000	0	0	0	0	0	0	0	0	0	10768	5796	10196	66490	89723	89723			1	
EDQTEYLEER	0	Unmodified	1310.5626	0.56263964	898;880;2869	P08238;Q58FF7;P07900;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.4	11	5	3	1	3	4	1	1		6	6	10	7	30.542	26.828	1;2	2.6443E-70	14973	160513_QHF_FH_JSI10Kac_3	233.45	201.1			0.9745	1.0242	8.4133	27	10	Median	1.2676	1.093	10.268	5	3	Median	0.87453	1.0384	4.4537	6	1	Median	0.99016	0.97462	6.9206	10	4	Median	0.95217	1.0105	6.2854	6	2	Median	73677000000	37332000000	36345000000	19817000000	10147000000	9670100000	16303000000	8916000000	7387300000	20299000000	10057000000	10242000000	17258000000	8212400000	9045800000	10769	898;880;2869	10197	66491;66492;66493;66494;66495;66496;66497;66498;66499;66500;66501;66502;66503;66504;66505;66506;66507;66508;66509;66510;66511;66512;66513;66514;66515;66516;66517;66518;66519	89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734;89735;89736;89737;89738;89739;89740;89741;89742;89743;89744;89745;89746;89747;89748;89749;89750;89751;89752;89753;89754;89755;89756;89757;89758;89759;89760;89761;89762;89763;89764;89765;89766	89761			43	
EDQTEYLEERR	0	Unmodified	1466.6638	0.66375066	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	4.01	8	8	1				1	1		5	4	4	6	22.857	21.358	2;3	1.4556E-72	17664	160511_QHF_FH_JSI11i_2	240.21	222.35			1.0972	1.0742	10.658	19	2	Median	1.2305	1.0427	8.5439	5	0	Median	0.80687	0.95976	2.5115	4	0	Median	1.1413	1.1299	3.819	4	0	Median	1.0665	1.1651	14.544	6	2	Median	8794500000	4190400000	4604000000	1560300000	678520000	881800000	2002600000	1143800000	858800000	2975300000	1370500000	1604800000	2256300000	997620000	1258600000	10770	898;880	10198	66520;66521;66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535;66536;66537;66538	89767;89768;89769;89770;89771;89772;89773;89774;89775;89776;89777;89778;89779;89780;89781;89782;89783;89784;89785;89786;89787;89788;89789;89790;89791;89792;89793;89794;89795;89796;89797;89798;89799;89800;89801;89802;89803;89804;89805;89806	89800			40	
EDQTEYLEERRVK	1	Unmodified	1693.8271	0.8271276	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2		By MS/MS			2	0		1									1			24.793	23.905	3	0.011108	20707	160511_QHF_FH_JSI10i_2	52.555	27.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24697000	24697000	0	0	0	0	24697000	24697000	0	0	0	0	0	0	0	10771	898	10199	66539	89807	89807			1	
EDQTLALLNQFK	1	Unmodified	1418.7405	0.74054442	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		83.906	83.65	2	0.0001072	75939	160511_QHF_FH_JSI10i_1	103.31	86.286			2.1099	2.2739	37.512	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5163	2.9646	NaN	1	1	Median	1.769	1.7441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64940000	15392000	49548000	0	0	0	37734000	7314700	30420000	27206000	8077100	19128000	0	0	0	10772	3156	10200	66540;66541	89808;89809	89809			2	
EDQVIQLMNAIFSK	1	Unmodified	1634.8338	0.83379288	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	1	2	4	102.33	102.22	2;3	1.8493E-80	88112	160511_QHF_FH_JSI12i_2	218.95	172.96			1.0187	0.89898	22.177	7	4	Median	1.0264	0.89323	0.90757	2	2	Median	0.66285	0.81707	NaN	1	0	Median	1.0911	1.1093	44.781	2	1	Median	0.95144	1.0291	9.3782	2	1	Median	981410000	519020000	462390000	228150000	107330000	120820000	71836000	44509000	27327000	393760000	203360000	190400000	287660000	163820000	123840000	10773	817	10201	66542;66543;66544;66545;66546;66547;66548;66549;66550	89810;89811;89812;89813;89814;89815;89816;89817;89818;89819	89813			10	
EDQYDHLDAADMTK	1	Unmodified	1650.6832	0.68316548	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	39.241	38.618	2;3	5.1579E-17	34287	160511_QHF_FH_JSI9i_1	130.24	120.58			0.83473	0.97475	40.52	9	4	Median	0.83383	0.67877	67.409	2	1	Median	0.82326	0.97187	0.41857	2	1	Median	0.78872	0.77216	0.48519	2	1	Median	1.3218	1.3827	18.025	3	1	Median	1123900000	598490000	525400000	160100000	70363000	89732000	337740000	172470000	165270000	303140000	173920000	129220000	322920000	181730000	141190000	10774	1417	10202	66551;66552;66553;66554;66555;66556;66557;66558;66559;66560	89820;89821;89822;89823;89824;89825;89826;89827;89828;89829;89830;89831;89832;89833;89834	89834			15	
EDQYDHLDAADMTK	1	Oxidation (M)	1666.6781	0.6780801	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0	By MS/MS			By matching	1	0	2									1			1	39.544	38.635	3	0.015172	34246	160511_QHF_FH_JSI9i_1	36.425	32.584			0.96809	0.92461	32.679	2	0	Median	0.86437	0.73384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0843	1.165	NaN	1	0	Median	66408000	32240000	34168000	29265000	13849000	15417000	0	0	0	0	0	0	37143000	18391000	18752000	10775	1417	10202	66561;66562	89835	89835		1073	1	
EDRFENNELFAK	1	Unmodified	1510.7052	0.70522155	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	1	2	4	44.114	43.423	2;3	8.1441E-05	36987	160511_QHF_FH_JSI12i_3	78.486	70.762			0.84524	0.96326	36.964	7	2	Median	1.1613	0.97607	NaN	1	0	Median	0.80855	0.98568	NaN	1	0	Median	0.84884	0.86481	10.052	2	1	Median	0.84524	0.96326	55.939	3	1	Median	564850000	305880000	258970000	67524000	26734000	40790000	115170000	78514000	36659000	237100000	129190000	107920000	145050000	71443000	73607000	10776	432	10203	66563;66564;66565;66566;66567;66568;66569;66570;66571	89836;89837;89838;89839;89840;89841;89842	89840			7	
EDRYEEEIK	1	Unmodified	1209.5513	0.55134667	929	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	17.43	16.726	2	0.012876	13586	160511_QHF_FH_JSI11i_2	67.113	47.842			0.95191	0.93853	22.011	4	0	Median	1.0198	0.87195	NaN	1	0	Median	1.1229	1.351	NaN	1	0	Median	0.84547	0.82712	NaN	1	0	Median	0.88853	1.0102	NaN	1	0	Median	131440000	64672000	66768000	21230000	9173600	12056000	25698000	8934600	16764000	49542000	26290000	23251000	34970000	20274000	14697000	10777	929	10204	66572;66573;66574;66575	89843;89844	89844			2	
EDSAPPSSVAR	0	Unmodified	1114.5255	0.52546627	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		11.834	11.597	2	0.0036368	9327	160511_QHF_FH_JSI11i_1	72.607	50.115			1.3043	1.4864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3043	1.4864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34890000	16427000	18463000	0	0	0	34890000	16427000	18463000	0	0	0	0	0	0	10778	4559	10205	66576;66577	89845;89846	89845			2	
EDSAPSKPVVGIIYPPPEVR	1	Unmodified	2149.1419	0.1419198	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	2	2	4	69.366	68.571	3	1.9385E-11	62793	160511_QHF_FH_JSI12i_1	135.49	120.24			0.92491	0.97724	39.111	9	5	Median	0.66233	0.56287	81.424	2	1	Median	0.77623	0.92767	7.3626	2	1	Median	0.98102	0.96046	8.5417	2	1	Median	0.91859	0.94044	11.6	3	2	Plateau	753360000	420790000	332570000	210810000	131070000	79744000	175980000	98574000	77408000	188630000	99494000	89132000	177940000	91655000	86284000	10779	2676	10206	66578;66579;66580;66581;66582;66583;66584;66585;66586;66587;66588	89847;89848;89849;89850;89851;89852;89853;89854;89855;89856;89857;89858;89859;89860;89861;89862;89863;89864;89865;89866;89867;89868	89856			22	
EDSARPGAHAK	1	Unmodified	1137.5527	0.55268407	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.22		8	4					2	1	4	6	4	1	3.079	0.98366	3;4	0.00027668	334	160511_QHF_FH_JSI11i_3	57.348	36.478			1.1118	1.0768	79.221	10	1	Median	1.1544	0.99076	56.91	3	0	Median	1.2147	1.4839	110.05	3	1	Median	1.0035	0.98103	63.488	3	0	Median	1.0707	1.1704	NaN	1	0	Median	1021800000	356640000	665200000	283490000	101520000	181970000	356570000	119680000	236890000	381020000	135030000	245990000	763780	404800	358980	10780	2361	10207	66589;66590;66591;66592;66593;66594;66595;66596;66597;66598;66599;66600;66601;66602;66603	89869;89870;89871;89872;89873;89874;89875;89876;89877;89878;89879;89880;89881;89882;89883;89884;89885;89886;89887;89888	89869			20	
EDSAVFYELK	1	Unmodified	1199.571	0.57101948	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	57.909	57.369	2	1.0975E-05	51929	160511_QHF_FH_JSI11i_1	114.5	94.71			0.65584	0.66756	6.7936	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64354	0.63625	NaN	1	1	Median	0.66836	0.70041	NaN	1	1	Median	428690000	304050000	124640000	0	0	0	0	0	0	228860000	175240000	53619000	199830000	128810000	71017000	10781	4449	10208	66604;66605	89889;89890	89889			2	
EDSAYGSQSVEQEAEK	1	Unmodified	1755.7435	0.74351713	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		27.969	27.372	2	1.7255E-30	24245	160511_QHF_FH_JSI10i_1	194.7	185.16			1.4622	1.7077	32.311	3	1	Median	2.6252	2.108	NaN	1	0	Median	1.4622	1.7077	NaN	1	0	Median	1.1673	1.1178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	130330000	50586000	79742000	40933000	14386000	26546000	51717000	19627000	32090000	37678000	16573000	21105000	0	0	0	10782	2157	10209	66606;66607;66608	89891;89892;89893;89894	89892			4	
EDSGSVPSTGPSQGTPISLK	1	Unmodified	1942.9484	0.94836495	2351	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	50.831	50.068	2	5.8287E-16	45258	160511_QHF_FH_JSI11i_1	153.09	138.06			0.86252	0.71917	25.522	3	2	Median	0.86252	0.71917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1613	1.108	NaN	1	1	Median	0.68981	0.70555	NaN	1	1	Median	82203000	45802000	36402000	23296000	13659000	9637200	0	0	0	32631000	16345000	16287000	26276000	15798000	10478000	10783	2351	10210	66609;66610;66611	89895;89896;89897	89895			3	
EDSHPFDLGLYNEAVK	1	Unmodified	1832.8581	0.85809337	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1.4	0.49	3	2									1	1	3	69.633	68.86	2;3	3.9492E-06	59252	160511_QHF_FH_JSI12i_2	116.78	99.894			1.1292	1.1808	26.533	5	1	Median	NaN	NaN	NaN	0	0	Median	0.91171	1.0506	NaN	1	0	Median	1.0136	1.0012	NaN	1	0	Median	1.1292	1.2606	27.338	3	1	Plateau	395020000	199940000	195080000	0	0	0	85862000	52783000	33079000	101660000	47577000	54079000	207500000	99583000	107920000	10784	1427	10211	66612;66613;66614;66615;66616	89898;89899;89900	89898			3	
EDSKTFDQLTPDESK	2	Acetyl (K)	1780.8003	0.80030372	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	58.95	49.582	2	0.015631	22221	160513_QHF_FH_JSI12Kac_2	61.435	54.994			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	541640	541640	0	0	0	0	0	0	0	0	0	0	541640	541640	0	10785	2652	10212	66617	89901	89901	2615		1	
EDSLAQAGETINALK	1	Unmodified	1558.7839	0.7838658	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				65.692	64.661	3	0.00038492	57490	160511_QHF_FH_JSI9i_1	73.834	67.148			1.5452	1.2617	NaN	1	1	Median	1.5452	1.2617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21774000	6514500	15259000	21774000	6514500	15259000	0	0	0	0	0	0	0	0	0	10786	5720	10213	66618	89902	89902			1	
EDSLDSVLFLK	1	Unmodified	1264.6551	0.65508346	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		87.517	86.925	2	0.010841	78903	160511_QHF_FH_JSI10i_1	46.334	33.523			1.5589	1.3894	68.696	2	1	Median	2.7165	2.2584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89465	0.85483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19176000	8488700	10687000	9510700	3459700	6050900	0	0	0	9665000	5028900	4636100	0	0	0	10787	2456;2457	10214	66619;66620;66621	89903;89904;89905	89904			3	
EDSMMEYLK	1	Unmodified	1144.478	0.47804707	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.048	56.396	2	0.00012068	50150	160511_QHF_FH_JSI9i_1	109.71	103.41			0.86713	0.92308	22.414	4	1	Median	0.82414	0.68057	NaN	1	1	Median	0.82146	0.96223	NaN	1	0	Median	0.91237	0.88553	NaN	1	0	Median	1.1221	1.1685	NaN	1	0	Median	344600000	193260000	151350000	80117000	44573000	35544000	107290000	65148000	42140000	82104000	43362000	38742000	75096000	40175000	34921000	10788	1426	10215	66622;66623;66624;66625	89906;89907;89908;89909;89910	89910			5	
EDSNLTLQEK	1	Unmodified	1175.567	0.56699673	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				1	2	4	4	27.879	22.622	2	6.4467E-09	13299	160513_QHF_FH_JSI12Kac_3	123.63	98.85			0.94724	0.96771	34.591	10	4	Median	1.407	1.1424	NaN	1	0	Median	0.64057	0.77273	NaN	1	0	Median	0.96898	0.94931	44.499	4	2	Median	0.93341	0.97862	34.269	4	2	Median	2822800000	1439400000	1383400000	635230000	328430000	306800000	670520000	391860000	278660000	701840000	325270000	376570000	815200000	393820000	421380000	10789	1600	10216	66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636	89911;89912;89913;89914;89915;89916;89917;89918;89919;89920;89921;89922;89923;89924;89925;89926;89927;89928;89929;89930;89931	89928			21	
EDSQRPGAHLTVK	1	Unmodified	1436.7372	0.73719038	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.08		11	14					3	8	10	9	10	7	15.922	13.066	2;3;4	4.8963E-06	10425	160511_QHF_FH_JSI11i_3	140.39	113.28			0.84014	0.79162	15.696	35	7	Plateau	1.1064	0.92259	17.317	10	2	Median	0.65612	0.67894	14.275	9	0	Linear	0.86741	0.843	10.657	9	3	Median	0.72673	0.78123	9.892	7	2	Median	18478000000	9161700000	9316500000	2765900000	1206800000	1559000000	5231000000	2484400000	2746600000	7660700000	3966700000	3694000000	2820700000	1503800000	1316900000	10790	936	10217	66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647;66648;66649;66650;66651;66652;66653;66654;66655;66656;66657;66658;66659;66660;66661;66662;66663;66664;66665;66666;66667;66668;66669;66670;66671;66672	89932;89933;89934;89935;89936;89937;89938;89939;89940;89941;89942;89943;89944;89945;89946;89947;89948;89949;89950;89951;89952;89953;89954;89955;89956;89957;89958;89959;89960;89961;89962;89963;89964;89965;89966;89967;89968;89969;89970;89971;89972;89973;89974;89975;89976;89977;89978;89979;89980;89981;89982;89983;89984;89985;89986;89987;89988;89989;89990;89991;89992;89993;89994;89995;89996;89997;89998;89999;90000;90001	89933			70	
EDSQRPGAHLTVKK	2	Acetyl (K)	1606.8427	0.84271808	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	1	0	0	2			By MS/MS		16	0									1			1		26.95	17.818	4	0.024144	10767	160513_QHF_FH_JSI11Kac_6	39.033	31.994			0.38706	0.38908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38706	0.38908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7201900	5552500	1649400	0	0	0	0	0	0	7201900	5552500	1649400	0	0	0	10791	936	10218	66673	90002	90002	693		1	
EDSSSAEFLEK	1	Unmodified	1240.5459	0.54592694	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		34.2	33.907	2	1.4338E-07	30354	160511_QHF_FH_JSI11i_1	123.96	111.37			0.83515	0.90133	7.8777	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73073	0.8525	NaN	1	0	Median	0.9545	0.95296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	267820000	126030000	141790000	0	0	0	136500000	64628000	71874000	131320000	61402000	69920000	0	0	0	10792	2448	10219	66674;66675	90003;90004	90003			2	
EDSSSTEFVEK	1	Unmodified	1256.5408	0.54084156	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	24.905	21.706	2	9.8768E-30	19051	160511_QHF_FH_JSI11i_1	190.96	166.04			0.95	1.0027	31.651	6	2	Median	0.94962	0.79477	NaN	1	0	Median	0.95039	1.1331	NaN	1	0	Median	1.0755	1.0429	46.538	3	2	Median	0.90043	0.96406	NaN	1	0	Median	766620000	382410000	384210000	146390000	70306000	76086000	183490000	79985000	103510000	171980000	91561000	80419000	264750000	140560000	124190000	10793	444	10220	66676;66677;66678;66679;66680;66681	90005;90006;90007;90008;90009;90010;90011;90012;90013;90014	90006			10	
EDSTTFAK	1	Unmodified	897.40798	0.40797689	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	13.517	10.78	2	0.00054424	9314	160511_QHF_FH_JSI11i_1	104.75	79.748			0.88427	0.96917	13.199	6	0	Median	1.2034	0.99044	NaN	1	0	Median	0.71909	0.86796	23.061	2	0	Median	0.90481	0.87965	10.635	2	0	Median	0.93416	0.99902	NaN	1	0	Median	1160700000	562790000	597920000	219100000	87411000	131690000	286320000	149000000	137320000	295040000	151270000	143770000	360250000	175110000	185140000	10794	3799	10221	66682;66683;66684;66685;66686;66687	90015;90016;90017;90018;90019;90020	90015			6	
EDSVKPGAHLTVK	2	Unmodified	1379.7409	0.74087877	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.56		11	10					2		4	3	10	6	20.302	19.08	2;3;4	1.9619E-05	15283	160511_QHF_FH_JSI12i_3	83.499	63.393			0.72878	0.84882	45.113	23	6	Median	1.0191	0.85749	8.0234	4	0	Median	0.71064	0.87253	2.9136	3	0	Median	0.89752	0.90799	66.779	10	6	Median	0.54315	0.6193	16.761	6	0	Plateau	7705100000	4230000000	3475100000	599440000	281630000	317810000	574200000	346520000	227680000	2729500000	1628900000	1100600000	3802000000	1973000000	1829000000	10795	1763	10222	66688;66689;66690;66691;66692;66693;66694;66695;66696;66697;66698;66699;66700;66701;66702;66703;66704;66705;66706;66707;66708;66709;66710	90021;90022;90023;90024;90025;90026;90027;90028;90029;90030;90031;90032;90033;90034;90035;90036;90037;90038;90039;90040;90041;90042;90043;90044;90045;90046;90047;90048;90049;90050;90051;90052;90053;90054	90053			34	
EDSWTLFKPPPVFPVDNSSAK	2	Unmodified	2360.1689	0.16886283	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	98.311	98.121	3	2.6906E-07	84427	160511_QHF_FH_JSI12i_2	103.26	88.335			0.59716	0.60014	10.913	4	4	Median	0.7064	0.58405	NaN	1	1	Median	0.60698	0.73852	NaN	1	1	Median	0.5875	0.59675	NaN	1	1	Median	0.55314	0.60354	NaN	1	1	Median	167410000	103480000	63936000	34871000	20842000	14029000	36094000	21518000	14576000	57272000	36996000	20276000	39177000	24122000	15055000	10796	3264	10223	66711;66712;66713;66714	90055;90056;90057;90058;90059;90060	90056			6	
EDTDFFQR	0	Unmodified	1056.4512	0.45123869	5560	Q9Y375	NDUFAF1	Complex I intermediate-associated protein 30, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.594	37.975	2	0.0024882	34190	160511_QHF_FH_JSI11i_1	79.713	64.071			0.84434	0.79237	15.234	4	1	Median	0.93673	0.78103	NaN	1	0	Median	0.52617	0.619	NaN	1	1	Median	0.90591	0.887	NaN	1	0	Median	0.78696	0.80386	NaN	1	0	Median	145680000	85993000	59691000	23291000	12103000	11188000	46820000	33503000	13317000	43916000	22180000	21736000	31657000	18207000	13450000	10797	5560	10224	66715;66716;66717;66718	90061;90062	90061			2	
EDTDHEEKASNEDVTK	2	Acetyl (K)	1887.797	0.79700926	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		20.579	13.116	3	0.046093	8892	160513_QHF_FH_JSI11Kac_3	35.329	24.844			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1225900	1225900	0	0	0	0	0	0	0	1225900	1225900	0	0	0	0	10798	532	10225	66719	90063	90063			1	
EDTEEHHLR	0	Unmodified	1164.516	0.51596421	1212;936	P09651;Q32P51;P22626	HNRNPA1;HNRNPA1L2;HNRNPA2B1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoproteins A2/B1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.88		12	4					7		2	4	10	7	5.9628	2.7854	2;3	7.157E-99	3054	160511_QHF_FH_JSI10i_2	247.94	206.29			0.75348	0.7684	16.647	19	4	Median	0.94944	0.80762	1.8509	2	0	Median	0.43746	0.53181	9.6641	2	0	Median	0.73571	0.7355	11.613	8	3	Median	0.75758	0.83096	11.804	7	1	Median	6108100000	3322800000	2785300000	710280000	367570000	342710000	974380000	783810000	190570000	1994200000	945010000	1049200000	2429300000	1226400000	1202900000	10799	936;1212	10226	66720;66721;66722;66723;66724;66725;66726;66727;66728;66729;66730;66731;66732;66733;66734;66735;66736;66737;66738;66739;66740;66741;66742	90064;90065;90066;90067;90068;90069;90070;90071;90072;90073;90074;90075;90076;90077;90078;90079;90080;90081;90082;90083;90084;90085;90086;90087;90088;90089;90090;90091;90092;90093;90094	90089			31	
EDTEEYNLR	0	Unmodified	1167.5044	0.50439647	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	25.069	21.309	2	2.1449E-31	18665	160511_QHF_FH_JSI10i_1	202.28	165.88			0.96747	0.93726	16.176	7	0	Median	1.0991	0.92039	NaN	1	0	Median	0.91265	1.0896	16.236	2	0	Median	0.99216	0.9549	2.6377	2	0	Median	0.72944	0.77923	12.54	2	0	Median	1209700000	633630000	576030000	347420000	152630000	194790000	275480000	145750000	129730000	322090000	190570000	131520000	264660000	144680000	119990000	10800	1763	10227	66743;66744;66745;66746;66747;66748;66749	90095;90096;90097;90098;90099;90100;90101;90102;90103;90104;90105	90100			11	
EDTEEYNLRDYFEK	1	Unmodified	1849.8006	0.80063808	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.539	2	14	4							5	4	7	4	62.54	61.874	2;3	2.1636E-05	54925	160511_QHF_FH_JSI10i_2	119.45	97.615			1.0097	1.1004	32.855	18	6	Median	1.0047	0.86113	42.369	5	3	Median	0.9704	1.1632	46.564	3	1	Plateau	1.2149	1.1612	19.11	6	2	Median	0.88351	0.92289	8.4914	4	0	Median	2200100000	1118600000	1081500000	371170000	159480000	211690000	480170000	244100000	236070000	885970000	461920000	424050000	462770000	253130000	209640000	10801	1763	10228	66750;66751;66752;66753;66754;66755;66756;66757;66758;66759;66760;66761;66762;66763;66764;66765;66766;66767;66768;66769	90106;90107;90108;90109;90110;90111;90112;90113;90114;90115;90116;90117;90118;90119;90120;90121;90122;90123;90124;90125;90126;90127;90128;90129;90130;90131;90132;90133	90126			28	
EDTGTFDTVLWAIGR	0	Unmodified	1679.8155	0.81550028	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.08	100.87	2	0.013829	86795	160511_QHF_FH_JSI12i_2	53.769	42.556			1.3634	1.4844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3634	1.4844	NaN	1	1	Median	37835000	12021000	25814000	0	0	0	0	0	0	0	0	0	37835000	12021000	25814000	10802	4879	10229	66770	90134	90134			1	
EDTLLLIGHLER	0	Unmodified	1407.7722	0.7721789	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		6							2	2	1	3	2	74.001	71.084	2;3	0.00037769	63119	160511_QHF_FH_JSI11i_2	73.891	65.759			0.96052	0.97054	6.2587	8	4	Median	1.1758	1.0138	6.7981	2	0	Median	0.78179	0.96504	NaN	1	0	Median	1.0276	1.0335	7.3897	3	3	Median	0.86034	0.94163	4.9018	2	1	Median	207570000	104340000	103230000	58370000	26013000	32357000	28819000	18232000	10587000	86253000	41562000	44691000	34131000	18531000	15600000	10803	3862	10230	66771;66772;66773;66774;66775;66776;66777;66778	90135;90136;90137;90138;90139;90140	90137			4	
EDTSEQVVPVLVK	1	Unmodified	1441.7664	0.76642482	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	61.089	60.365	2	3.9116E-06	54894	160511_QHF_FH_JSI12i_1	123.62	104.38			1.04	0.83945	11.151	3	2	Plateau	1.04	0.83945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79361	0.77558	NaN	1	1	Median	0.66015	0.67357	NaN	1	1	Median	160120000	89413000	70706000	49634000	23135000	26499000	0	0	0	55326000	33187000	22139000	55160000	33091000	22068000	10804	1403	10231	66779;66780;66781	90141;90142;90143;90144	90142			4	
EDVATWQQSSLSLR	0	Unmodified	1618.7951	0.79509919	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			62.743	61.675	2	0.0035512	54827	160511_QHF_FH_JSI9i_1	64.121	46.257			1.1677	0.94132	NaN	1	1	Median	1.1677	0.94132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20327000	6871400	13456000	20327000	6871400	13456000	0	0	0	0	0	0	0	0	0	10805	2081	10232	66782;66783	90145;90146	90146			2	
EDVDAAVK	1	Unmodified	845.41306	0.41306227	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.12	5.53	3				3	2					2	3	3	17.914	13.345	2	0.00077183	7101	160513_QHF_FH_JSI12Kac_2	106.04	45.243			1.1291	1.1789	14.587	8	3	Median	NaN	NaN	NaN	0	0	Median	0.97087	1.1552	20.458	2	1	Median	1.2871	1.2342	12.391	3	1	Plateau	1.1303	1.1974	19.338	3	1	Median	2630300000	1434300000	1195900000	0	0	0	850260000	475300000	374950000	1002300000	554820000	447450000	777760000	404220000	373540000	10806	878	10233	66784;66785;66786;66787;66788;66789;66790;66791	90147;90148;90149;90150;90151;90152	90152			6	
EDVDDLVSQLR	0	Unmodified	1287.6307	0.63065962	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.281	73.783	2	0.00020453	66930	160511_QHF_FH_JSI10i_1	80.916	55.108			0.81452	0.83747	14.733	4	0	Median	0.99953	0.81454	NaN	1	0	Median	0.74009	0.86105	NaN	1	0	Median	0.89644	0.88497	NaN	1	0	Median	0.62588	0.64055	NaN	1	0	Median	111140000	53635000	57505000	16579000	6599800	9979300	40072000	20926000	19145000	27936000	14571000	13365000	26554000	11538000	15015000	10807	1016	10234	66792;66793;66794;66795	90153;90154;90155;90156;90157	90156			5	
EDVDVLK	1	Unmodified	816.4229	0.42289868	4533	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.117	29.519	2	0.04193	26109	160511_QHF_FH_JSI11i_1	46.426	22.454			1.0269	1.0783	30.982	4	0	Median	0.74139	0.60396	NaN	1	0	Median	1.0033	1.1899	NaN	1	0	Median	1.1206	1.068	NaN	1	0	Median	1.051	1.0887	NaN	1	0	Median	207520000	103750000	103780000	42961000	24659000	18303000	53224000	27129000	26096000	46875000	23012000	23863000	64461000	28947000	35514000	10808	4533	10235	66796;66797;66798;66799	90158	90158			1	
EDVEVAESPLR	0	Unmodified	1242.6092	0.6091959	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		51.841	42.326	2	0.026702	23178	160513_QHF_FH_JSI11Kac_3	53.327	42.498			1.7683	1.7827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7683	1.7827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1132300	428910	703410	0	0	0	0	0	0	1132300	428910	703410	0	0	0	10809	4284	10236	66800	90159	90159			1	
EDVFVHQTAIK	1	Unmodified	1285.6667	0.6666512	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.03	6.4	5	8	8				6	8	4	8	11	10	10	40.51	35.621	2;3	3.4951E-48	30622	160511_QHF_FH_JSI11i_2	222.3	192.04			0.95229	1.013	19.086	38	7	Median	1.1997	0.96146	31.571	7	2	Median	0.88559	1.0723	11.055	11	0	Median	0.95229	0.9513	24.468	10	3	Median	0.93391	1.0087	8.9979	10	2	Median	8365200000	3959000000	4406200000	1495900000	527610000	968280000	2061600000	1029900000	1031700000	3029500000	1571300000	1458200000	1778200000	830130000	948080000	10810	2066;1106	10237	66801;66802;66803;66804;66805;66806;66807;66808;66809;66810;66811;66812;66813;66814;66815;66816;66817;66818;66819;66820;66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831;66832;66833;66834;66835;66836;66837;66838;66839	90160;90161;90162;90163;90164;90165;90166;90167;90168;90169;90170;90171;90172;90173;90174;90175;90176;90177;90178;90179;90180;90181;90182;90183;90184;90185;90186;90187;90188;90189;90190;90191;90192;90193;90194;90195;90196;90197;90198;90199;90200;90201;90202;90203;90204;90205;90206;90207;90208;90209;90210;90211;90212;90213;90214;90215;90216;90217;90218;90219;90220;90221;90222;90223;90224;90225;90226;90227;90228;90229;90230;90231;90232;90233;90234;90235	90211			76	
EDVFVHQTAIKK	2	Unmodified	1413.7616	0.76161421	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.66	6.38		11	12					7	8	8	9	11	10	31.645	27.669	2;3;4	1.0386E-07	24052	160511_QHF_FH_JSI10i_2	143.79	114.32			1.0927	1.0702	61.022	38	21	Median	1.3365	1.1417	30.696	8	1	Median	0.96435	1.1308	47.838	9	5	Median	0.92643	0.91704	56.948	11	6	Median	0.99904	1.1078	90.376	10	9	Median	11354000000	5366500000	5987400000	792520000	343630000	448900000	929750000	453630000	476120000	2738700000	1169900000	1568800000	6893000000	3399400000	3493600000	10811	2066;1106	10238	66840;66841;66842;66843;66844;66845;66846;66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857;66858;66859;66860;66861;66862;66863;66864;66865;66866;66867;66868;66869;66870;66871;66872;66873;66874;66875;66876;66877	90236;90237;90238;90239;90240;90241;90242;90243;90244;90245;90246;90247;90248;90249;90250;90251;90252;90253;90254;90255;90256;90257;90258;90259;90260;90261;90262;90263;90264;90265;90266;90267;90268;90269;90270;90271;90272;90273;90274;90275;90276;90277;90278;90279;90280;90281;90282;90283;90284;90285;90286;90287;90288;90289	90271			53	
EDVFVHQTAIKK	2	Acetyl (K)	1455.7722	0.7721789	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	1	0	0	1			By MS/MS		15	0								1				1		50.607	40.003	3	0.028719	22311	160513_QHF_FH_JSI11Kac_5	38.3	30.435			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2870400	2870400	0	0	0	0	0	0	0	2870400	2870400	0	0	0	0	10812	2066;1106	10238	66878	90290	90290			1	
EDVGPGK	1	Unmodified	700.33917	0.33916905	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	6.4236	6.1919	2	0.011128	4165	160511_QHF_FH_JSI10i_1	71.852	49.23			0.9312	1.103	16.281	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9312	1.103	NaN	1	0	Median	0.83983	0.82618	NaN	1	0	Median	1.0152	1.0871	NaN	1	0	Median	1292200000	698180000	594020000	0	0	0	484700000	270180000	214510000	396550000	215620000	180930000	410950000	212370000	198580000	10813	1054	10239	66879;66880;66881	90291;90292;90293;90294;90295;90296	90296			6	
EDVLSFIQMHR	0	Unmodified	1373.6762	0.67617003	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		76.316	76.316	3	0.048121	68127	160511_QHF_FH_JSI11i_3	38.402	28.715			0.92001	0.87697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92001	0.87697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17999000	10205000	7794100	0	0	0	0	0	0	17999000	10205000	7794100	0	0	0	10814	3505	10240	66882	90297	90297			0	
EDVLWFKPVELR	1	Unmodified	1529.8242	0.82421447	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	84.921	84.094	3	0.0026109	73846	160511_QHF_FH_JSI11i_2	52.576	37.031			0.98222	1.0585	39.184	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3708	1.3965	NaN	1	0	Median	0.70378	0.80237	NaN	1	0	Median	33349000	16445000	16904000	0	0	0	0	0	0	23341000	9990600	13350000	10008000	6454300	3553900	10815	2795	10241	66883;66884	90298;90299	90299			2	
EDVNEAIR	0	Unmodified	944.45632	0.45632407	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	18.454	17.961	2	0.0012875	15448	160511_QHF_FH_JSI12i_1	91.516	52.724			1.0812	1.1005	17.091	4	0	Median	1.6491	1.3279	NaN	1	0	Median	0.81482	0.94159	NaN	1	0	Median	1.2793	1.2394	NaN	1	0	Median	0.91378	0.97714	NaN	1	0	Median	1211900000	525780000	686080000	239090000	79458000	159630000	312980000	146600000	166380000	300490000	123450000	177040000	359300000	176280000	183020000	10816	1411	10242	66885;66886;66887;66888	90300;90301	90300			2	
EDVPEQGKDDVR	1	Unmodified	1385.6423	0.64228694	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				14.648	13.679	2	0.01207	11005	160511_QHF_FH_JSI9i_1	65.347	29.013			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10817	3564	10243	66889	90302	90302			1	
EDVQDYSEDLQEIKK	2	Unmodified	1837.8582	0.85815295	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	55.453	54.794	2;3	2.5028E-05	49340	160511_QHF_FH_JSI10i_1	103.5	86.219			0.83505	1.2247	27.39	4	2	Linear	1.7124	1.3998	NaN	1	1	Median	0.71853	0.84296	NaN	1	0	Median	1.1185	1.0715	NaN	1	0	Median	1.4728	1.5474	NaN	1	1	Median	551200000	241630000	309560000	104430000	34947000	69481000	158900000	82392000	76509000	149620000	61366000	88259000	138240000	62930000	75315000	10818	655	10244	66890;66891;66892;66893;66894	90303;90304;90305;90306;90307;90308	90306			6	
EDVSLHGYK	1	Unmodified	1046.5033	0.50327426	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		21.74	21.417	2	0.0017268	18502	160511_QHF_FH_JSI10i_2	69.825	55.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8520300	0	8520300	0	0	0	0	0	0	8520300	0	8520300	0	0	0	10819	2306	10245	66895;66896	90309;90310	90310			2	
EDVSLHGYKK	2	Unmodified	1174.5982	0.59823728	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	15.306	15.344	2;3;4	1.9713E-07	12022	160511_QHF_FH_JSI12i_3	98.943	82.311			0.91743	0.93765	15.615	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93115	0.88562	12.99	2	0	Median	0.91743	0.93765	17.352	3	0	Median	616730000	267280000	349460000	0	0	0	0	0	0	153080000	73632000	79446000	463650000	193640000	270010000	10820	2306	10246	66897;66898;66899;66900;66901	90311;90312;90313;90314;90315	90313			4	
EDVSLHGYKK	2	Acetyl (K)	1216.6088	0.60880197	2306	Q12792	TWF1	Twinfilin-1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	37.318	27.773	2	0.015729	16660	160513_QHF_FH_JSI12Kac_4	65.305	53.712			0.074906	0.08658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074906	0.08658	NaN	1	1	Median	938430	867660	70774	0	0	0	0	0	0	0	0	0	938430	867660	70774	10821	2306	10246	66902	90316	90316	2411		1	
EDWIAYISR	0	Unmodified	1151.5611	0.56112349	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			80.601	70.212	2	0.022883	34976	160513_QHF_FH_JSI10Kac_5	47.198	39.968			0.87442	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87442	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1899300	1160400	738910	0	0	0	1899300	1160400	738910	0	0	0	0	0	0	10822	733	10247	66903	90317	90317			1	
EDWKPVLTINSIIYGLQYLFLEPNPEDPLNK	2	Unmodified	3657.8971	0.89705165	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			102.94	97.216	3;4	2.2643E-56	57520	160513_QHF_FH_JSI10Kac_6	162.92	152.05			0.73176	0.87352	5.438	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73176	0.87352	5.438	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	581600000	333020000	248580000	0	0	0	581600000	333020000	248580000	0	0	0	0	0	0	10823	1935	10248	66904;66905	90318;90319;90320;90321	90321			4	
EDWNEIDPIK	1	Unmodified	1257.5877	0.58773217	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	64.196	63.557	2	0.0025766	57735	160511_QHF_FH_JSI12i_1	59.04	22.347			1.0635	1.0965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0635	1.0965	NaN	1	0	Median	71015000	34826000	36189000	0	0	0	0	0	0	0	0	0	71015000	34826000	36189000	10824	2294	10249	66906	90322	90322			1	
EDYAGLK	1	Unmodified	794.38103	0.38103386	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	2	3	22.083	18.092	2	0.0099712	15782	160511_QHF_FH_JSI10i_1	76.847	41.646			0.93829	1.0031	19.418	8	0	Median	1.9264	1.5886	NaN	1	0	Median	0.89283	1.0665	14.402	2	0	Median	1.0086	0.9871	14.733	2	0	Median	0.98235	1.0409	8.9934	3	0	Plateau	2656100000	1281100000	1375000000	471820000	239890000	231930000	675550000	362010000	313540000	676340000	317060000	359280000	832350000	362140000	470210000	10825	2093	10250	66907;66908;66909;66910;66911;66912;66913;66914	90323;90324;90325;90326;90327;90328	90325			6	
EDYSFTAYATISYLK	1	Unmodified	1770.8352	0.83523267	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.364	91.304	2	0.0046795	82848	160511_QHF_FH_JSI10i_1	54.471	47.583			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10826	1579	10251	66915	90329	90329			1	
EEAAAVPAAAPDDLALLK	1	Unmodified	1763.9305	0.93053004	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	79.478	78.932	2;3	1.8114E-16	70201	160511_QHF_FH_JSI9i_1	164.64	150.2			1.1267	1.0591	13.589	6	1	Median	1.2528	1.0251	11.787	2	0	Median	0.70709	0.83227	NaN	1	0	Median	1.0973	1.0666	NaN	1	1	Median	1.1219	1.1371	11.047	2	0	Median	266300000	121230000	145070000	88154000	37351000	50803000	16435000	9558800	6876300	82398000	39995000	42403000	79315000	34327000	44989000	10827	3323	10252	66916;66917;66918;66919;66920;66921	90330;90331;90332;90333;90334	90333			5	
EEAAEYAK	1	Unmodified	909.40798	0.40797689	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.4	5	3	1		3	3				2	5	4	4	10.252	6.8918	2	0.00018793	6760	160511_QHF_FH_JSI12i_1	121.62	71.579			0.97618	1.054	27.666	14	2	Median	1.1777	0.95891	29.958	2	1	Median	0.74203	0.88501	46.508	4	1	Median	1.1471	1.1248	6.8514	4	0	Median	0.82778	0.89753	25.247	4	0	Median	6850300000	3436800000	3413500000	1468600000	681080000	787510000	1672400000	938310000	734070000	1787600000	886780000	900860000	1921700000	930650000	991030000	10828	2018	10253	66922;66923;66924;66925;66926;66927;66928;66929;66930;66931;66932;66933;66934;66935;66936	90335;90336;90337;90338;90339;90340;90341;90342;90343;90344;90345;90346;90347;90348;90349;90350;90351;90352	90340			18	
EEAAEYAKLLAK	2	Acetyl (K)	1376.7187	0.71874635	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.2	0.433						3	1				1		3	74.667	65.676	2	1.801E-06	34454	160513_QHF_FH_JSI12Kac_4	115.18	96.395			3.0713	3.5748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0713	3.5748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8224000	5443000	2781000	0	0	0	1391600	82151	1309400	0	0	0	6832400	5360900	1471500	10829	2018	10254	66937;66938;66939;66940	90353;90354;90355;90356	90355	2052		4	
EEAATGGGSTGEADGK	1	Unmodified	1435.6063	0.60629536	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	4.99	4	2	1	3	3					1	4	4	4	7.4328	3.561	2	3.1236E-159	4258	160511_QHF_FH_JSI9i_1	301.35	238.53			1.0629	1.0446	23.678	12	2	Median	1.3124	1.0652	NaN	1	0	Median	1.1167	1.2742	9.1036	3	0	Median	1.0629	1.0258	21.067	4	1	Median	0.89647	0.95364	32.646	4	1	Median	1622900000	781320000	841550000	392920000	165190000	227730000	400690000	196280000	204410000	394690000	198060000	196630000	434570000	221790000	212790000	10830	313	10255	66941;66942;66943;66944;66945;66946;66947;66948;66949;66950;66951;66952;66953	90357;90358;90359;90360;90361;90362;90363;90364;90365;90366;90367;90368;90369;90370;90371;90372;90373;90374;90375;90376;90377;90378;90379;90380	90370			24	
EEAAVDAQQQK	1	Unmodified	1215.5731	0.57314474	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					2	1	3	2	10.544	6.7309	2	1.9122E-05	6613	160511_QHF_FH_JSI12i_1	132.01	102.92			0.61632	0.60239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61632	0.60239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21934000	901120	21033000	0	0	0	0	0	0	1233400	901120	332260	20701000	0	20701000	10831	2636	10256	66954;66955;66956;66957;66958;66959;66960;66961	90381;90382;90383;90384;90385;90386;90387;90388	90384			8	
EEADENYNSVNTR	0	Unmodified	1539.6437	0.6437435	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			16.727	15.665	2	3.5787E-12	13182	160511_QHF_FH_JSI10i_1	117.23	106.71			1.0732	0.85662	NaN	1	0	Median	1.0732	0.85662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25187000	14618000	10569000	25187000	14618000	10569000	0	0	0	0	0	0	0	0	0	10832	2313	10257	66962;66963	90389;90390;90391	90389			3	
EEADRYQR	0	Unmodified	1065.4839	0.4839358	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				61.501	60.415	1	0.01422	53708	160511_QHF_FH_JSI9i_1	47.743	17.936			0.007212	0.0058991	NaN	1	1	Median	0.007212	0.0058991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104970000	102710000	2261800	104970000	102710000	2261800	0	0	0	0	0	0	0	0	0	10833	2560	10258	66964	90392	90392			1	
EEAEAPVEDGSQPPPPEPK	1	Unmodified	2001.9167	0.91673047	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	1	2	34.302	33.647	2;3	8.5341E-18	29410	160511_QHF_FH_JSI9i_1	157.52	144.09			0.98577	0.96465	23.613	7	2	Median	1.199	0.97559	16.267	2	0	Median	0.77134	0.91108	8.079	2	1	Median	1.5248	1.4948	NaN	1	1	Median	0.81575	0.84636	26.413	2	0	Median	351630000	162470000	189160000	104500000	45436000	59064000	110090000	52341000	57748000	44058000	16483000	27575000	92986000	48211000	44774000	10834	5633	10259	66965;66966;66967;66968;66969;66970;66971;66972	90393;90394;90395;90396;90397;90398;90399;90400;90401	90400			9	
EEAEKPER	1	Unmodified	986.46689	0.46688876	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	3	5	4	4.7871	4.4379	2;3	1.7393E-05	2357	160511_QHF_FH_JSI12i_1	143.01	73.812			1.0845	1.1174	16.055	15	1	Median	1.3134	1.058	18.097	4	0	Median	1.0775	1.252	10.345	3	0	Median	1.2934	1.2587	17.569	4	1	Linear	1.0642	1.1334	15.415	4	0	Median	12042000000	5561100000	6480600000	2398600000	1064000000	1334500000	2518600000	1175500000	1343200000	3847800000	1757200000	2090600000	3276700000	1564400000	1712300000	10835	1050	10260	66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984;66985;66986;66987;66988	90402;90403;90404;90405;90406;90407;90408;90409;90410;90411;90412;90413;90414;90415;90416;90417;90418;90419;90420;90421;90422;90423;90424;90425	90410			24	
EEAENTLQSFR	0	Unmodified	1322.6103	0.61025853	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	37.421	36.878	2	5.599E-06	33507	160511_QHF_FH_JSI12i_1	114.89	85.584			1.1009	1.1919	14.23	5	5	Median	1.7841	1.4343	NaN	1	1	Median	1.0432	1.2326	NaN	1	1	Median	1.0591	1.0243	3.3032	2	2	Median	1.1663	1.1919	NaN	1	1	Median	410460000	204210000	206250000	60031000	22281000	37750000	73586000	38330000	35256000	210320000	108410000	101910000	66517000	35183000	31334000	10836	913	10261	66989;66990;66991;66992;66993	90426;90427;90428;90429;90430	90428			5	
EEAENTLQSFRQDVDNASLAR	0	Unmodified	2392.1255	0.12549446	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		68.184	67.611	3	6.3914E-06	59500	160511_QHF_FH_JSI9i_2	69.398	51.341			1.1231	1.2054	14.292	4	0	Median	1.6368	1.3885	NaN	1	0	Median	0.97445	1.2047	NaN	1	0	Median	1.1231	1.0879	14.584	2	0	Median	NaN	NaN	NaN	0	0	Median	294890000	134570000	160320000	70755000	27036000	43720000	113490000	50835000	62657000	110650000	56699000	53947000	0	0	0	10837	913	10262	66994;66995;66996;66997	90431;90432;90433;90434;90435;90436;90437;90438	90433			8	
EEAERLEK	1	Unmodified	1002.4982	0.49818889	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.17	0.687	1	3	2							2		1	3	7.7154	7.3382	2;3	0.0070043	5108	160511_QHF_FH_JSI12i_2	45.161	7.9697			0.81462	0.80248	23.214	6	1	Median	1.0646	0.89837	11.972	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1128	1.0982	NaN	1	0	Median	0.67239	0.7612	15.624	3	0	Plateau	1421600000	747990000	673560000	322570000	180990000	141580000	0	0	0	202730000	100740000	101990000	896250000	466270000	429980000	10838	1426	10263	66998;66999;67000;67001;67002;67003	90439;90440;90441;90442;90443	90441			5	
EEAEVKPEVK	2	Unmodified	1156.5976	0.59756858	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	13.857	13.419	2;3	0.00078185	10745	160511_QHF_FH_JSI9i_1	63.408	44.165			1.0016	1.0178	26.313	8	0	Median	1.2903	1.0673	13.378	2	0	Median	1.0016	1.1766	13.841	2	0	Median	0.95195	0.91508	28.941	2	0	Median	0.64361	0.67358	8.4832	2	0	Median	945920000	483000000	462920000	238130000	90138000	147990000	223010000	119930000	103080000	248410000	140130000	108280000	236370000	132810000	103560000	10839	571	10264	67004;67005;67006;67007;67008;67009;67010;67011	90444;90445;90446;90447;90448;90449	90449			6	
EEAGGGISEEEAAQYDR	0	Unmodified	1809.7653	0.7653152	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	3	2	36.423	34.127	2	2.8089E-40	30338	160511_QHF_FH_JSI10i_1	202.13	182.37			1.0314	1.0779	9.8475	5	1	Median	1.3043	1.0779	NaN	1	0	Median	1.0145	1.1758	11.497	2	1	Median	1.0314	1.0052	NaN	1	0	Median	0.95038	0.99919	NaN	1	0	Median	1010400000	520640000	489770000	216980000	104390000	112590000	273620000	155230000	118390000	220210000	106280000	113930000	299600000	154740000	144860000	10840	5233	10265	67012;67013;67014;67015;67016;67017;67018;67019	90450;90451;90452;90453;90454;90455;90456;90457;90458;90459;90460	90456			11	
EEAIKFSEEQR	1	Acetyl (K)	1406.6678	0.66777341	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		46.833	37.487	2	0.0051708	20943	160513_QHF_FH_JSI11Kac_3	70.977	65.196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	810290	810290	0	0	0	0	0	0	0	810290	810290	0	0	0	0	10841	1024	10266	67020	90461	90461	843		1	
EEAIQVAIAELR	0	Unmodified	1340.73	0.72997974	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	80.306	79.128	2	0.00076253	68387	160511_QHF_FH_JSI12i_2	78.342	51.827			1.7009	1.8657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7009	1.8657	NaN	1	1	Median	12296000	5842500	6453400	0	0	0	0	0	0	0	0	0	12296000	5842500	6453400	10842	2574	10267	67021;67022	90462;90463	90462			2	
EEALELINGYIQK	1	Unmodified	1518.793	0.79297392	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	84.676	84.215	2;3	9.2376E-07	76314	160511_QHF_FH_JSI10i_1	160.53	145.52			0.99288	0.9965	14.446	8	0	Median	1.2503	1.0306	23.031	2	0	Median	0.91775	1.0585	4.2095	2	0	Median	1.0868	1.0506	11.81	2	0	Median	0.79439	0.83519	1.5631	2	0	Median	283390000	139360000	144040000	32998000	17068000	15930000	89834000	46581000	43253000	90083000	36500000	53583000	70479000	39210000	31269000	10843	2433	10268	67023;67024;67025;67026;67027;67028;67029;67030	90464;90465;90466;90467;90468;90469;90470;90471;90472;90473	90470			10	
EEAMIAYVEEMKK	2	Unmodified	1569.7419	0.74186633	2955	Q5T8D3	ACBD5	Acyl-CoA-binding domain-containing protein 5	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	68.149	66.85	3	0.0022409	57550	160511_QHF_FH_JSI12i_2	57.034	45.421			0.51072	0.55187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51072	0.55187	NaN	1	1	Median	16089000	12299000	3790500	0	0	0	0	0	0	0	0	0	16089000	12299000	3790500	10844	2955	10269	67031	90474	90474			1	
EEAPASPLRPLYPQISPLK	1	Unmodified	2105.1521	0.15209055	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		77.05	76.522	3	2.3422E-05	68246	160511_QHF_FH_JSI11i_3	77.39	51.566			0.7031	0.72062	10.235	4	1	Median	0.82774	0.7315	NaN	1	1	Median	0.66987	0.84333	NaN	1	0	Median	0.7031	0.68493	5.066	2	0	Median	NaN	NaN	NaN	0	0	Median	194410000	98712000	95700000	46142000	24314000	21828000	41215000	21923000	19292000	107060000	52475000	54580000	0	0	0	10845	2134	10270	67032;67033;67034;67035	90475;90476;90477;90478	90476			4	
EEAPDILCLQETK	1	Unmodified	1544.7392	0.73922379	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	7	6	2					2				2			2	64.392	63.343	2	5.3071E-05	56253	160511_QHF_FH_JSI9i_1	116.01	74.01			1.8168	1.5051	101.05	2	1	Median	1.8168	1.5051	101.05	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82601000	35068000	47533000	82601000	35068000	47533000	0	0	0	0	0	0	0	0	0	10846	1294	10271	67036;67037;67038;67039	90479;90480;90481;90482	90480			4	
EEAQAEIEQYR	0	Unmodified	1364.6208	0.62082322	506	O75348	ATP6V1G1	V-type proton ATPase subunit G 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	33.247	30.951	2	6.2666E-18	27529	160511_QHF_FH_JSI10i_1	157.97	121.64			0.85746	0.89196	10.988	5	2	Median	1.1645	0.94934	NaN	1	0	Median	0.76221	0.89196	NaN	1	0	Median	1.0059	0.97925	19.239	2	1	Median	0.83594	0.87392	NaN	1	1	Median	505930000	271580000	234340000	132480000	67369000	65112000	114470000	60095000	54374000	134360000	79380000	54984000	124610000	64740000	59871000	10847	506	10272	67040;67041;67042;67043;67044;67045;67046	90483;90484;90485;90486;90487;90488;90489;90490;90491	90488			9	
EEAQALEDLTGFK	1	Unmodified	1449.6987	0.69873919	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.285	71.768	2	3.6606E-06	65227	160511_QHF_FH_JSI11i_1	123.2	94.996			1.0589	1.1097	75.425	4	4	Median	0.77488	0.63605	NaN	1	1	Median	0.74309	0.87827	NaN	1	1	Median	1.447	1.4021	NaN	1	1	Median	3.3987	3.5978	NaN	1	1	Median	655310000	233740000	421570000	90090000	44766000	45324000	110250000	65696000	44557000	162150000	65372000	96781000	292810000	57905000	234910000	10848	1576	10273	67047;67048;67049;67050	90492;90493;90494;90495	90492			4	
EEAQKLLEQYK	2	Acetyl (K)	1419.7246	0.72456001	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1				By MS/MS	13.5	0.5						1	1						2	64.598	54.63	2	0.040666	28552	160513_QHF_FH_JSI12Kac_3	44.765	19.548			1.0645	1.1619	50.516	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0645	1.1619	50.516	2	0	Median	6821700	3126400	3695300	0	0	0	0	0	0	0	0	0	6821700	3126400	3695300	10849	2161	10274	67051;67052	90496	90496			1	
EEAQPIVTK	1	Unmodified	1013.5393	0.53932542	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.381	16.9	2	0.00018053	14512	160511_QHF_FH_JSI12i_1	86.67	41.978			0.99441	0.99972	8.3255	4	0	Median	1.0478	0.85396	NaN	1	0	Median	0.86749	1.016	NaN	1	0	Median	1.0137	0.9837	NaN	1	0	Median	0.97553	1.0177	NaN	1	0	Median	1658500000	850700000	807840000	436750000	198030000	238710000	390340000	227280000	163060000	362250000	172920000	189320000	469210000	252460000	216740000	10850	2785	10275	67053;67054;67055;67056	90497;90498;90499;90500	90498			4	
EEAQPIVTKYK	2	Acetyl (K)	1346.7082	0.70818166	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		49.208	39.83	2	0.015343	22026	160513_QHF_FH_JSI11Kac_3	53.683	43.159			0.55448	0.56987	67.207	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83228	0.91657	NaN	1	0	Median	0.3694	0.35432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4528300	2934000	1594300	0	0	0	1116300	643190	473120	3412000	2290800	1121200	0	0	0	10851	2785	10276	67057;67058	90501	90501	2684		1	
EEAQSLEDLAGFK	1	Unmodified	1435.6831	0.68308912	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.044	67.462	2	4.141E-11	61353	160511_QHF_FH_JSI12i_1	196.48	177.74			1.2285	1.2069	21.192	4	3	Median	1.1398	0.95136	NaN	1	0	Median	0.88141	1.0367	NaN	1	1	Median	1.492	1.446	NaN	1	1	Median	1.3241	1.4052	NaN	1	1	Median	594190000	299090000	295100000	86434000	52290000	34145000	134690000	76579000	58115000	165810000	63127000	102680000	207250000	107090000	100160000	10852	1576	10277	67059;67060;67061;67062	90502;90503;90504;90505	90503			4	
EEAQTSGVQEAETR	0	Unmodified	1533.6907	0.6906937	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.723	13.754	2	0.00015831	11084	160511_QHF_FH_JSI9i_1	110.31	99.934			1.9132	1.5814	NaN	1	1	Median	1.9132	1.5814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22315000	6668900	15646000	22315000	6668900	15646000	0	0	0	0	0	0	0	0	0	10853	3517	10278	67063	90506	90506			1	
EEAQVTPDSDK	1	Unmodified	1217.5412	0.54117591	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.39	6				4					1	3	4	2	12.037	9.1123	2	7.0003E-13	8139	160511_QHF_FH_JSI9i_1	143.5	122.6			0.82103	0.82381	35.926	8	5	Median	1.3622	1.1386	NaN	1	0	Median	0.5966	0.67951	9.5435	2	2	Median	0.89625	0.85763	48.592	4	3	Median	0.83106	0.86444	NaN	1	0	Median	380490000	211850000	168640000	78364000	35498000	42867000	75431000	45592000	29839000	136820000	73967000	62852000	89874000	56796000	33078000	10854	512	10279	67064;67065;67066;67067;67068;67069;67070;67071;67072;67073	90507;90508;90509;90510;90511;90512;90513;90514;90515;90516;90517;90518	90516			12	
EEASDLLLNK	1	Unmodified	1130.5819	0.58191851	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	47.956	47.376	2	2.4401E-07	42163	160511_QHF_FH_JSI9i_1	114.89	82.54			1.1403	1.2233	33.149	5	3	Median	1.0469	0.85486	NaN	1	0	Median	1.2773	1.4833	27.254	2	1	Median	1.4932	1.4488	36.335	2	2	Median	NaN	NaN	NaN	0	0	Median	521810000	217190000	304620000	101470000	43893000	57573000	192440000	88388000	104050000	227910000	84907000	143000000	0	0	0	10855	2332	10280	67074;67075;67076;67077;67078;67079	90519;90520;90521;90522;90523;90524;90525	90525			7	
EEASDYLELDTIK	1	Unmodified	1524.7195	0.71953421	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.04	12	2	3		1	5				5	8	5	5	67.351	64.325	2;3	6.3413E-82	61088	160511_QHF_FH_JSI10i_1	244.27	224.5			1.0115	1.006	20.647	20	7	Median	1.0498	0.88944	9.3485	4	1	Median	0.76062	0.90006	24.339	7	3	Median	1.1063	1.0946	7.5163	5	2	Median	1.1254	1.1411	15.415	4	1	Median	11210000000	5567400000	5643100000	2225800000	1098500000	1127300000	3781500000	1999900000	1781600000	2765400000	1307500000	1457900000	2437700000	1161500000	1276300000	10856	1057	10281	67080;67081;67082;67083;67084;67085;67086;67087;67088;67089;67090;67091;67092;67093;67094;67095;67096;67097;67098;67099;67100;67101;67102	90526;90527;90528;90529;90530;90531;90532;90533;90534;90535;90536;90537;90538;90539;90540;90541;90542;90543;90544;90545;90546;90547;90548;90549;90550;90551;90552;90553;90554;90555;90556;90557;90558;90559;90560;90561;90562;90563;90564;90565	90544			39	
EEASGSSVTAEEAK	1	Unmodified	1393.6209	0.6208828	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.22	4	1		2	3					1	4	3	2	15.195	11.379	2	7.7268E-40	9839	160511_QHF_FH_JSI11i_1	198.81	182.67			0.9353	0.98259	4.3915	8	0	Median	1.1912	0.97826	NaN	1	0	Median	0.82011	0.97061	5.0303	3	0	Plateau	0.9781	0.9457	0.53258	2	0	Median	0.93237	0.98819	0.18057	2	0	Median	3295200000	1657700000	1637500000	714200000	306290000	407910000	897530000	491140000	406390000	895550000	434340000	461200000	787960000	425950000	362010000	10857	1024	10282	67103;67104;67105;67106;67107;67108;67109;67110;67111;67112	90566;90567;90568;90569;90570;90571;90572;90573;90574;90575;90576;90577;90578;90579;90580;90581	90567			16	
EEASGSSVTAEEAKK	2	Unmodified	1521.7158	0.71584581	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	5.16	8	1				3				2	4	3	3	11.988	9.8706	2;3	2.2632E-209	7923	160511_QHF_FH_JSI11i_1	336.79	307.32			1.0525	1.0828	29.666	12	2	Median	1.3409	1.1136	0.087989	2	0	Median	0.87775	1.0311	15.269	4	0	Median	1.0878	1.0668	50.378	3	1	Median	1.0751	1.152	27.841	3	1	Median	8052100000	3639000000	4413000000	2165300000	939160000	1226100000	2015300000	864490000	1150900000	1801900000	881670000	920200000	2069600000	953720000	1115900000	10858	1024	10283	67113;67114;67115;67116;67117;67118;67119;67120;67121;67122;67123;67124	90582;90583;90584;90585;90586;90587;90588;90589;90590;90591;90592;90593;90594;90595;90596;90597;90598;90599;90600;90601	90584			20	
EEASNFR	0	Unmodified	851.37735	0.37734547	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.43	0.495	4	3								2	2	2	1	8.5653	8.2009	2	0.008921	6148	160511_QHF_FH_JSI12i_1	81.381	44.825			1.0543	1.0328	13.01	7	0	Median	1.3652	1.1478	25.472	2	0	Median	0.8678	1.0408	13.203	2	0	Median	1.0629	1.048	2.0642	2	0	Median	0.93031	0.98543	NaN	1	0	Median	3730600000	1985200000	1745400000	830400000	402110000	428290000	1131500000	618280000	513190000	996520000	575140000	421380000	772260000	389720000	382530000	10859	1266	10284	67125;67126;67127;67128;67129;67130;67131	90602;90603;90604	90602			3	
EEASTSLPTKPTQGASSASEPQEAPPKPAEDK	3	Unmodified	3264.5634	0.5633745	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	36.006	35.273	4	1.4993E-13	31712	160511_QHF_FH_JSI11i_1	81.697	71.086			0.93059	0.88932	11.488	5	3	Median	0.92253	0.7672	6.7649	2	2	Median	0.74988	0.88932	NaN	1	0	Median	0.97083	0.95452	NaN	1	0	Median	0.93059	0.95122	NaN	1	1	Median	419900000	242820000	177080000	124610000	67187000	57427000	111770000	64131000	47640000	117830000	65771000	52055000	65691000	45730000	19961000	10860	751	10285	67132;67133;67134;67135;67136	90605;90606;90607;90608;90609;90610;90611;90612;90613;90614	90606			10	
EEAWVIGSVVAR	0	Unmodified	1314.6932	0.6932003	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.6	0.49	2	3									2	2	1	71.4	70.741	2	0.00010445	62807	160511_QHF_FH_JSI10i_2	102.95	81.491			0.8082	0.9409	12.164	5	0	Median	NaN	NaN	NaN	0	0	Median	0.73421	0.86728	11.522	2	0	Median	0.88839	0.86239	17.955	2	0	Median	0.87143	0.98545	NaN	1	0	Median	621810000	319870000	301950000	0	0	0	218070000	123530000	94534000	266150000	123500000	142640000	137600000	72829000	64770000	10861	1205	10286	67137;67138;67139;67140;67141	90615;90616;90617;90618	90618			4	
EEAYNSLMK	1	Unmodified	1083.4907	0.49066067	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	36.396	32.587	2	5.0685E-08	29210	160511_QHF_FH_JSI12i_1	144.09	117.49			0.98246	1.0273	22.963	8	0	Median	1.1638	0.96047	56.6	2	0	Median	0.82444	0.97558	7.6282	2	0	Median	1.126	1.0772	7.0199	2	0	Median	0.99638	1.0725	12.579	2	0	Median	3821000000	1866400000	1954600000	1100300000	505670000	594650000	876070000	464300000	411770000	995050000	476270000	518780000	849570000	420130000	429440000	10862	1544	10287	67142;67143;67144;67145;67146;67147;67148;67149	90619;90620;90621;90622;90623;90624;90625;90626;90627;90628;90629	90622			11	
EEAYNSLMK	1	Oxidation (M)	1099.4856	0.48557529	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0		By matching	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	28.646	23.358	2	0.0058318	29285	160511_QHF_FH_JSI12i_1	58.433	30.215			1.1493	1.1976	9.7864	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0931	1.288	NaN	1	0	Median	1.102	1.0611	NaN	1	0	Median	1.1496	1.1976	NaN	1	0	Median	146970000	67841000	79126000	0	0	0	3449500	1219000	2230600	7190300	3526600	3663700	136330000	63095000	73232000	10863	1544	10287	67150;67151;67152	90630;90631	90630		1213	2	
EEDAFHFVSYVPVNGR	0	Unmodified	1864.8744	0.87441214	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	74.81	74.058	2;3	7.8001E-08	65793	160511_QHF_FH_JSI10i_2	103.88	97.971			0.81669	1.0001	36.165	7	2	Median	0.80896	0.69502	69.142	2	1	Median	0.69909	0.8773	18.52	2	1	Median	1.1671	1.165	NaN	1	0	Median	0.90997	0.98672	23.702	2	0	Median	306140000	146750000	159390000	66659000	29351000	37307000	78640000	45765000	32874000	86809000	36054000	50756000	74029000	35579000	38449000	10864	5663	10288	67153;67154;67155;67156;67157;67158;67159;67160;67161	90632;90633;90634;90635;90636;90637;90638;90639;90640	90638			9	
EEDAFYSK	1	Unmodified	987.41854	0.41854158	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.428	20.907	2	0.00064438	18037	160511_QHF_FH_JSI10i_1	101.43	101.43			0.99131	1.3716	25.956	4	2	Linear	0.93973	0.78115	NaN	1	1	Median	1.0457	1.2591	NaN	1	0	Median	1.343	1.3109	NaN	1	0	Median	0.84311	0.87352	NaN	1	1	Median	332920000	158540000	174370000	87570000	35844000	51726000	67113000	40016000	27097000	83042000	43794000	39248000	95191000	38888000	56302000	10865	5382	10289	67162;67163;67164;67165	90641;90642;90643;90644;90645;90646	90644			6	
EEDAFYSKK	2	Acetyl (K)	1157.5241	0.52406928	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		39.464	30.389	2	0.012892	17503	160513_QHF_FH_JSI11Kac_3	72.643	62.732			0.16514	0.15669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16514	0.15669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2673800	2162200	511540	0	0	0	0	0	0	2673800	2162200	511540	0	0	0	10866	5382	10290	67166	90647	90647	3378		1	
EEDEEEDVPGQAK	1	Unmodified	1473.6107	0.61071204	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.798	17.313	2	2.5155E-13	14740	160511_QHF_FH_JSI10i_1	204.5	193.01			7.1855	5.9778	NaN	1	1	Median	7.1855	5.9778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106680000	31306000	75374000	44850000	3050300	41800000	23366000	0	23366000	10208000	0	10208000	28256000	28256000	0	10867	1297	10291	67167;67168;67169;67170	90648;90649;90650;90651	90650			4	
EEDEEEDVPGQAKDEL	1	Unmodified	1830.7643	0.76431215	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	43.281	42.645	2	2.8115E-25	38721	160511_QHF_FH_JSI12i_1	228.83	217.3			0.15598	0.15945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15598	0.15945	NaN	1	1	Median	66591000	56387000	10205000	0	0	0	0	0	0	0	0	0	66591000	56387000	10205000	10868	1297	10292	67171	90652	90652			1	
EEDEEEETENSLPIPASK	1	Unmodified	2044.8961	0.8960546	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	81.905	73.581	4	0.047599	40404	160513_QHF_FH_JSI11Kac_6	15.592	10.382			0.98333	0.94234	11.427	5	0	Median	1.1843	1.0091	0	2	0	Median	0.70709	0.83899	NaN	1	0	Median	0.98333	0.94234	NaN	1	0	Median	0.74225	0.78177	NaN	1	0	Median	2175100000	1102500000	1072600000	991310000	461730000	529570000	398440000	221320000	177120000	597960000	305610000	292350000	187430000	113850000	73578000	10869	4673	10293	67172;67173;67174;67175;67176	90653;90654;90655;90656	90654			4	
EEDGSLSLDGADSTGVVAK	1	Unmodified	1848.8589	0.85888124	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.962	7		4							3	4	2	2	53.388	52.675	2;3	1.7694E-118	47978	160511_QHF_FH_JSI12i_1	344.47	334.28			0.90388	0.92529	21.569	8	3	Median	1.1338	0.92225	NaN	1	0	Median	0.79828	0.9459	32.065	3	1	Median	0.8239	0.80422	14.413	2	1	Median	0.96094	0.99028	9.1339	2	1	Median	2610000000	1302400000	1307600000	656310000	296710000	359600000	695300000	349570000	345730000	692430000	388470000	303950000	566000000	267650000	298350000	10870	2380	10294	67177;67178;67179;67180;67181;67182;67183;67184;67185;67186;67187	90657;90658;90659;90660;90661;90662;90663;90664;90665;90666;90667;90668;90669;90670;90671;90672;90673;90674;90675;90676;90677;90678	90665			22	
EEDGSVELESQVQK	1	Unmodified	1575.7264	0.7264105	3976	Q96B23	C18orf25	Uncharacterized protein C18orf25	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.886	34.653	2	4.5502E-08	30498	160511_QHF_FH_JSI9i_1	100.55	86.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10871	3976	10295	67188	90679	90679			1	
EEDKEPLIELFVK	2	Unmodified	1587.8396	0.83958976	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	89.595	89.141	3	0.00023821	77205	160511_QHF_FH_JSI12i_2	67.997	57.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10872	5711	10296	67189;67190;67191	90680;90681;90682	90680			3	
EEDLFELSHR	0	Unmodified	1273.5939	0.59388018	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	58.708	47.981	3	0.040444	24526	160513_QHF_FH_JSI12Kac_5	23.749	17.09			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10873	4986	10297	67192;67193;67194	90683;90684;90685	90684			3	
EEDLTEK	1	Unmodified	862.39199	0.39199248	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0				By MS/MS	1	0	1												1	9.8084	9.4377	2	0.045207	7335	160511_QHF_FH_JSI12i_1	48.561	6.9089			1.2324	1.2953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2324	1.2953	NaN	1	1	Median	229470000	114890000	114580000	0	0	0	0	0	0	0	0	0	229470000	114890000	114580000	10874	957	10298	67195	90686	90686			1	
EEDMLELLK	1	Unmodified	1118.5529	0.55292657	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		77.487	77.161	2	0.0048111	70119	160511_QHF_FH_JSI11i_1	56.434	28.011			0.91025	0.88194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91025	0.88194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35082000	15647000	19435000	0	0	0	0	0	0	35082000	15647000	19435000	0	0	0	10875	1314	10299	67196	90687;90688	90687			2	
EEDPATGTGDPPR	0	Unmodified	1340.5844	0.58443771	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.304	13.862	2	7.2545E-16	11433	160511_QHF_FH_JSI10i_1	166.87	150.99			0.99478	1.0072	8.7498	4	0	Median	1.376	1.1324	NaN	1	0	Median	0.78405	0.91856	NaN	1	0	Median	1.0046	0.98601	NaN	1	0	Median	0.98507	1.0289	NaN	1	0	Median	818490000	393220000	425280000	219110000	96211000	122890000	212790000	115020000	97770000	190650000	86076000	104580000	195940000	95907000	100040000	10876	1573	10300	67197;67198;67199;67200	90689;90690;90691;90692;90693;90694;90695	90693			7	
EEDPATGTGDPPRK	1	Unmodified	1468.6794	0.67940073	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		10.31	9.9262	2;3	0.0020395	7573	160511_QHF_FH_JSI10i_1	80.706	65.734			1.1196	1.1063	45.972	3	3	Median	0.90401	0.73938	NaN	1	1	Median	1.5534	1.8501	NaN	1	1	Median	1.1196	1.1063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	272750000	135420000	137330000	101200000	51470000	49730000	60417000	29377000	31041000	111130000	54573000	56555000	0	0	0	10877	1573	10301	67201;67202;67203;67204	90696;90697;90698;90699	90698			4	
EEDQATLVEQVK	1	Unmodified	1387.6831	0.68308912	4131	Q96IZ7	RSRC1	Serine/Arginine-related protein 53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	42.651	39.17	2	2.1648E-05	35231	160511_QHF_FH_JSI11i_1	110.84	97.119			0.90896	0.99827	9.9956	6	1	Median	1.0454	0.88773	NaN	1	1	Median	0.90896	1.0614	3.1421	2	0	Median	1.207	1.1233	NaN	1	0	Median	0.85755	0.92602	5.0973	2	0	Median	171840000	76290000	95548000	27674000	13846000	13828000	51305000	24996000	26309000	50180000	19596000	30584000	42679000	17852000	24827000	10878	4131	10302	67205;67206;67207;67208;67209;67210	90700;90701;90702;90703;90704;90705;90706	90700			7	
EEDRPPLR	0	Unmodified	1010.5145	0.51450765	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	10.724	10.034	3	0.009074	7607	160511_QHF_FH_JSI12i_2	40.002	21.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10879	1804	10303	67211	90707	90707			1	
EEDTSGYR	0	Unmodified	955.3883	0.38830408	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.7259	4.0597	2	0.0015677	4115	160511_QHF_FH_JSI10i_1	87.754	80.083			0.99837	1.02	16.005	6	0	Median	0.95713	0.79521	NaN	1	0	Median	0.73955	0.87289	15.333	2	0	Median	1.1224	1.09	2.7029	2	0	Median	1.0414	1.0979	NaN	1	0	Median	524830000	258230000	266600000	77057000	37638000	39418000	158710000	87659000	71051000	145260000	59881000	85374000	143810000	73054000	70755000	10880	1085	10304	67212;67213;67214;67215;67216;67217	90708;90709;90710	90710			3	
EEEAIQLDGLNASQIR	0	Unmodified	1784.8905	0.89045614	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	67.263	66.637	2	1.548E-09	59235	160511_QHF_FH_JSI9i_1	180.28	144.6			1.3365	1.2316	8.4882	6	6	Median	1.4545	1.174	10.115	2	2	Median	1.034	1.2029	NaN	1	1	Median	1.262	1.2331	10.016	2	2	Median	1.3297	1.3654	NaN	1	1	Median	246360000	110660000	135700000	74897000	29351000	45546000	49917000	24749000	25168000	87316000	41536000	45781000	34229000	15025000	19204000	10881	1057	10305	67218;67219;67220;67221;67222;67223	90711;90712;90713;90714;90715;90716	90716			6	
EEEATEWQHK	1	Unmodified	1285.5575	0.55749468	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.735	14.494	2	0.0026869	12091	160511_QHF_FH_JSI10i_1	61.161	46.011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10882	1426	10306	67224	90717	90717			1	
EEEDVSGEPEASPSADTTILFVK	1	Unmodified	2449.1384	0.13841014	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		77.249	77.003	2	3.1147E-13	69843	160511_QHF_FH_JSI10i_1	103.21	98.499			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10883	1559	10307	67225;67226	90718;90719	90719			2	
EEEEEVFESSVPQR	0	Unmodified	1692.7479	0.74787422	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.696	46.018	2	1.7619E-21	41549	160511_QHF_FH_JSI11i_1	176.42	92.563			1.0169	1.181	19.576	4	2	Linear	1.0402	0.82368	NaN	1	1	Median	0.76233	0.86804	NaN	1	1	Median	1.3214	1.2675	NaN	1	0	Median	0.9942	1.0443	NaN	1	0	Median	112960000	53889000	59067000	25636000	10885000	14751000	25354000	15008000	10346000	31669000	13562000	18107000	30297000	14434000	15863000	10884	429	10308	67227;67228;67229;67230;67231	90720;90721;90722;90723;90724;90725	90720			6	
EEEEFNTGPLSVLTQSVK	1	Unmodified	2005.9844	0.9844161	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				95.259	94.646	2	3.0793E-07	83938	160511_QHF_FH_JSI9i_1	96.734	83.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10885	2002	10309	67232	90726	90726			1	
EEEEPMDTSSVTHTEHYK	1	Unmodified	2147.8953	0.8953431	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	29.928	28.62	3	0.0006537	24124	160511_QHF_FH_JSI12i_2	56.407	50.747			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10886	326	10310	67233	90727	90727			1	
EEEFLTNELSR	0	Unmodified	1365.6412	0.64122431	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	55.424	54.664	2	2.9646E-07	49327	160511_QHF_FH_JSI10i_1	120.27	70.459			0.5766	0.561	19.595	5	1	Median	0.88608	0.72982	16.782	2	1	Median	0.4249	0.49136	NaN	1	0	Median	0.5766	0.5595	NaN	1	0	Median	0.54482	0.561	NaN	1	0	Median	972320000	568510000	403810000	448720000	242250000	206470000	164810000	103320000	61482000	167590000	102780000	64817000	191190000	120160000	71038000	10887	2727	10311	67234;67235;67236;67237;67238	90728;90729;90730;90731;90732;90733;90734;90735;90736	90732			9	
EEEGLANGSAAEPAMPNTYGVEPLPQEVLK	1	Unmodified	3139.502	0.50196022	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.695	89.265	3	1.8881E-23	80974	160511_QHF_FH_JSI10i_1	112.39	110.14			0.77527	0.76403	20.777	4	0	Median	1.2897	1.0746	NaN	1	0	Median	0.58851	0.66626	NaN	1	0	Median	0.76324	0.72735	NaN	1	0	Median	0.7875	0.80255	NaN	1	0	Median	108890000	56352000	52537000	23091000	8981400	14110000	23054000	15049000	8004600	30156000	16814000	13342000	32588000	15507000	17081000	10888	1674	10312	67239;67240;67241;67242	90737;90738;90739;90740;90741;90742;90743;90744	90741			8	
EEEGLANGSAAEPAMPNTYGVEPLPQEVLKK	2	Unmodified	3267.5969	0.59692324	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	81.401	80.883	3	0.016277	73712	160511_QHF_FH_JSI12i_1	26.826	24.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10889	1674	10313	67243	90745	90745			1	
EEEGMLSPILAHGGVR	0	Unmodified	1693.8458	0.84575455	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	63.128	62.361	2;3	8.8096E-45	55220	160511_QHF_FH_JSI10i_2	176.42	141.7			1.0804	1.0475	16.006	7	1	Median	1.2475	1.0698	12.119	2	1	Median	0.87105	1.0475	NaN	1	0	Median	0.92095	0.91814	16.425	2	0	Median	1.1606	1.2197	17.631	2	0	Median	914460000	447790000	466670000	155200000	72867000	82337000	233840000	119410000	114430000	400660000	199340000	201320000	124760000	56171000	68585000	10890	4524	10314	67244;67245;67246;67247;67248;67249;67250;67251	90746;90747;90748;90749;90750;90751;90752;90753;90754;90755;90756;90757;90758	90758			13	
EEEGTGVVHQAPYFGAEDYR	0	Unmodified	2252.9974	0.9974404	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	53.348	52.468	2;3	1.1774E-25	45441	160511_QHF_FH_JSI11i_2	178.77	167.78			1.0904	1.1544	9.5332	9	1	Median	1.4637	1.232	11.005	2	0	Median	0.98161	1.1915	4.4783	2	0	Median	1.1329	1.1284	3.2266	2	0	Median	1.0816	1.1623	12.71	3	1	Plateau	1515700000	725320000	790340000	180890000	79021000	101870000	503260000	268600000	234660000	364600000	173870000	190730000	466910000	203830000	263080000	10891	1520	10315	67252;67253;67254;67255;67256;67257;67258;67259;67260;67261	90759;90760;90761;90762;90763;90764;90765;90766;90767;90768;90769;90770;90771;90772;90773;90774;90775;90776;90777;90778;90779;90780;90781	90776			23	
EEEIAALVIDNGSGMCK	1	Acetyl (Protein N-term)	1876.8547	0.85466426	2062	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	101.56	101.45	2	2.5869E-160	92174	160511_QHF_FH_JSI11i_1	215.08	209.04			0.94393	1.2266	23.148	4	0	Linear	1.4542	1.1987	NaN	1	0	Median	1.0618	1.2552	NaN	1	0	Median	0.85042	0.83384	NaN	1	0	Median	1.3421	1.4324	NaN	1	0	Median	5656400000	2758100000	2898400000	766590000	320220000	446370000	1671400000	823220000	848170000	1846300000	1006200000	840020000	1372200000	608370000	763810000	10892	2062	10316	67262;67263;67264;67265	90782;90783;90784;90785	90783			4	
EEEIAALVIDNGSGMCK	1	Acetyl (Protein N-term);Oxidation (M)	1892.8496	0.84957888	2062	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	1.8	0.98	3		2								3	1	1	98.036	97.901	2	1.3872E-21	88794	160511_QHF_FH_JSI12i_1	205.02	193.71			0.12439	0.12839	32.341	3	3	Median	NaN	NaN	NaN	0	0	Median	0.15801	0.1874	NaN	1	1	Median	0.10562	0.098465	NaN	1	1	Median	0.12439	0.12839	NaN	1	1	Median	161430000	148020000	13417000	0	0	0	63116000	57636000	5480300	50381000	47509000	2871800	47935000	42870000	5064700	10893	2062	10316	67266;67267;67268;67269;67270	90786;90787;90788;90789;90790	90789		1726	5	
EEEIAALVIDNGSGMCKAGFAGDDAPR	1	Acetyl (Protein N-term)	2834.2851	0.28510793	2062	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				101.25	101.08	3	0.0084506	89259	160511_QHF_FH_JSI9i_1	30.249	23.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10894	2062	10317	67271	90791	90791			1	
EEEIEFLYNENTVR	0	Unmodified	1783.8265	0.8264589	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	70.366	69.821	2;3	6.3233E-81	63108	160511_QHF_FH_JSI10i_1	244.12	235.12			1.1556	1.0994	12.328	8	2	Median	1.3439	1.0994	3.1421	2	2	Median	0.94674	1.0819	6.0706	2	0	Median	1.2485	1.196	21.817	2	0	Median	1.0907	1.1516	20.415	2	0	Median	637190000	312930000	324260000	162020000	74340000	87678000	197780000	107970000	89811000	150670000	69693000	80973000	126730000	60934000	65794000	10895	1520	10318	67272;67273;67274;67275;67276;67277;67278;67279	90792;90793;90794;90795;90796;90797;90798;90799;90800;90801;90802	90797			11	
EEEIVDWWSK	1	Unmodified	1319.6034	0.60338224	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	75.553	75.014	2	1.0136E-05	68470	160511_QHF_FH_JSI12i_1	114.97	53.006			0.93191	0.93551	32.253	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2031	1.1752	NaN	1	0	Median	0.72182	0.74473	NaN	1	1	Median	110560000	53953000	56602000	0	0	0	4267600	4267600	0	54607000	20679000	33928000	51681000	29006000	22675000	10896	5161	10319	67280;67281;67282	90803;90804;90805	90804			3	
EEELNAIR	0	Unmodified	972.48762	0.4876242	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	24.578	23.893	2	0.0069882	21078	160511_QHF_FH_JSI12i_1	60.895	22.477			1.3784	1.1485	6.3309	3	0	Plateau	1.3784	1.1485	NaN	1	0	Median	0.83133	1.0119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0493	1.0749	NaN	1	0	Median	233050000	116130000	116920000	97636000	44747000	52889000	66290000	36592000	29698000	0	0	0	69126000	34793000	34333000	10897	3328	10320	67283;67284;67285	90806;90807;90808	90806			3	
EEELNAIRTENSSLTK	1	Unmodified	1832.9116	0.91158551	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			40.332	39.366	3	0.018323	34629	160511_QHF_FH_JSI10i_2	42.913	32.059			1.1577	1.4001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1577	1.4001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53556000	27737000	25819000	0	0	0	53556000	27737000	25819000	0	0	0	0	0	0	10898	3328	10321	67286	90809	90809			1	
EEELQAALAR	0	Unmodified	1128.5775	0.57750184	1436;1445;3263	P35579;Q7Z406;P35749	MYH9;MYH14;MYH11	Myosin-9;Myosin-14;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.726	38.107	2	0.00045126	34232	160511_QHF_FH_JSI10i_1	74.173	50.649			0.56294	0.55722	34.28	4	2	Median	0.59151	0.48232	NaN	1	0	Median	0.53575	0.64376	NaN	1	0	Median	0.92005	0.88977	NaN	1	1	Median	0.39637	0.40754	NaN	1	1	Median	267890000	181260000	86629000	55954000	36748000	19206000	78763000	58533000	20230000	61274000	40151000	21124000	71898000	45830000	26069000	10899	1436;3263;1445	10322	67287;67288;67289;67290	90810;90811;90812;90813	90812			4	
EEENASVIDSAELQAYPALVVEK	1	Unmodified	2503.233	0.23297923	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	91.369	90.962	3	4.0418E-08	82467	160511_QHF_FH_JSI10i_1	75.956	69.003			0.86912	0.85634	14.044	4	3	Median	0.85894	0.70869	NaN	1	1	Median	0.74321	0.86308	NaN	1	0	Median	0.87942	0.84966	NaN	1	1	Median	0.96909	0.99837	NaN	1	1	Median	181470000	104060000	77413000	23995000	14873000	9122700	70066000	43394000	26673000	40537000	20754000	19784000	46871000	25037000	21834000	10900	2094	10323	67291;67292;67293;67294	90814;90815;90816;90817;90818;90819	90817			6	
EEENVGIDITEPLYMQR	0	Unmodified	2034.9568	0.95682114	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	81.674	81.28	2;3	8.1305E-08	73965	160511_QHF_FH_JSI10i_1	155.14	139.2			1.2313	1.2594	21.491	3	2	Median	NaN	NaN	NaN	0	0	Median	0.78959	0.91568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2964	1.3176	6.3941	2	2	Median	139670000	67792000	71876000	0	0	0	103060000	51421000	51638000	0	0	0	36609000	16371000	20238000	10901	1409	10324	67295;67296;67297	90820;90821;90822;90823	90822			4	
EEEPVKK	2	Unmodified	857.44945	0.44944778	2488;4308	Q99729;Q14103	HNRNPAB;HNRNPD	Heterogeneous nuclear ribonucleoprotein A/B;Heterogeneous nuclear ribonucleoprotein D0	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91	4	4				2	3			2	3	4	4	5.4052	2.1492	2;3	0.0056905	2726	160511_QHF_FH_JSI9i_2	95.62	21.285			0.93497	0.92427	21.088	13	1	Median	1.0914	0.90921	27.28	2	1	Median	0.78219	0.92561	25.78	3	0	Median	0.96865	0.95228	7.1605	4	0	Median	0.70553	0.75186	20.059	4	0	Median	3961600000	1972500000	1989100000	888090000	417380000	470710000	985630000	509820000	475810000	1150700000	554120000	596580000	937190000	491200000	445980000	10902	4308;2488	10325	67298;67299;67300;67301;67302;67303;67304;67305;67306;67307;67308;67309;67310	90824;90825;90826;90827;90828;90829;90830;90831;90832;90833;90834	90832			9	
EEETEAAIGAPPTATEGPETKPVLMALAEGPGAEGPR	1	Unmodified	3672.7829	0.78288611	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							3	4	3	2	88.49	88.082	3;4	9.2344E-39	80286	160511_QHF_FH_JSI11i_1	118.23	116.41			0.90885	0.9903	23.487	11	4	Median	0.83879	0.72631	43.845	2	1	Median	0.74049	0.89089	11.388	4	1	Median	1.0565	1.0314	18.229	3	1	Median	1.1507	1.2004	0.8127	2	1	Median	269360000	137270000	132090000	28350000	16309000	12041000	133650000	77957000	55691000	78473000	30939000	47534000	28890000	12064000	16825000	10903	2380	10326	67311;67312;67313;67314;67315;67316;67317;67318;67319;67320;67321;67322	90835;90836;90837;90838;90839;90840;90841;90842;90843;90844;90845;90846;90847;90848;90849;90850;90851;90852;90853;90854;90855;90856;90857;90858;90859;90860;90861	90840			27	
EEETSIDVAGKPNEVTK	2	Unmodified	1844.9004	0.90035212	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	9					3				3	3	3	3	35.444	32.7	2;3	2.7779E-09	29070	160511_QHF_FH_JSI11i_1	167.88	146.65			1.1437	1.1247	32.732	12	3	Median	1.3214	1.083	43.055	3	2	Median	0.95543	1.1278	29.004	3	0	Median	1.1713	1.1494	32.099	3	1	Median	1.1167	1.2043	16.035	3	0	Median	2380100000	1148300000	1231800000	574300000	270200000	304100000	630390000	342920000	287470000	652420000	296330000	356090000	523020000	238840000	284180000	10904	1812	10327	67323;67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334	90862;90863;90864;90865;90866;90867;90868;90869;90870;90871;90872;90873;90874;90875;90876;90877;90878;90879;90880	90864			19	
EEEVQQQK	1	Unmodified	1016.4775	0.47745344	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					1	2	2	3	5.4455	2.1744	2	2.1644E-35	2969	160511_QHF_FH_JSI12i_1	219.74	119			1.0925	1.1268	40.417	7	3	Median	0.82706	0.68804	NaN	1	0	Median	1.4533	1.6873	13.628	2	1	Median	1.559	1.5418	49.955	2	1	Median	0.98309	1.0331	12.277	2	1	Median	803040000	371470000	431570000	150220000	76015000	74205000	187030000	87413000	99615000	202650000	60192000	142460000	263140000	147850000	115290000	10905	4013	10328	67335;67336;67337;67338;67339;67340;67341;67342	90881;90882;90883;90884;90885;90886;90887;90888	90883			8	
EEEWDPEYTPK	1	Unmodified	1421.5987	0.59869079	5542;5124	Q9Y2W1;Q9NYF8	THRAP3;BCLAF1	Thyroid hormone receptor-associated protein 3;Bcl-2-associated transcription factor 1	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	44.319	43.807	2	1.8108E-20	39758	160511_QHF_FH_JSI12i_1	155.42	141.21			1.3293	1.3351	12.819	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5275	1.4618	NaN	1	1	Median	1.1568	1.2194	NaN	1	1	Median	377740000	172160000	205580000	0	0	0	0	0	0	155920000	61165000	94753000	221820000	110990000	110820000	10906	5542;5124	10329	67343;67344;67345	90889;90890;90891	90891			3	
EEEWEKPK	2	Acetyl (K)	1115.5135	0.5135046	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	38.882	30.272	2	0.039699	17151	160513_QHF_FH_JSI12Kac_3	58.981	34.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1321100	1321100	0	0	0	0	0	0	0	0	0	0	1321100	1321100	0	10907	4521	10330	67346	90892	90892			1	
EEFAIMQTPAGELYDK	1	Unmodified	1840.8553	0.85531618	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.585	80.115	2	3.3135E-15	72998	160511_QHF_FH_JSI12i_1	162.48	140.28			1.1985	1.2402	12.289	4	0	Median	1.2054	0.9915	NaN	1	0	Median	1.0855	1.2684	NaN	1	0	Median	1.3336	1.2986	NaN	1	0	Median	1.1917	1.2126	NaN	1	0	Median	270840000	119460000	151380000	54297000	25459000	28838000	51774000	23567000	28207000	82673000	37504000	45169000	82094000	32930000	49163000	10908	3860	10331	67347;67348;67349;67350	90893;90894;90895;90896;90897;90898;90899;90900	90896			8	
EEFASTCPDDEEIELAYEQVAK	1	Unmodified	2572.1163	0.11629449	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	87.579	87.186	2;3	3.1396E-36	79487	160511_QHF_FH_JSI11i_1	185.67	179.23			0.96838	1.059	30.724	7	1	Median	1.8084	1.45	NaN	1	1	Median	0.90139	1.0259	4.4846	2	0	Median	0.86888	0.84918	16.089	2	0	Median	1.5779	1.6564	10.396	2	0	Median	204570000	100940000	103630000	12031000	4227800	7803300	67205000	35498000	31708000	62020000	38263000	23757000	63309000	22950000	40359000	10909	119	10332	67351;67352;67353;67354;67355;67356;67357	90901;90902;90903;90904;90905;90906;90907;90908;90909	90904			9	
EEFAVPENSSVQQFK	1	Unmodified	1737.821	0.82097959	5299;5427	Q9UHD9;Q9UMX0	UBQLN2;UBQLN1	Ubiquilin-2;Ubiquilin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.91	58.262	2	2.2564E-21	52629	160511_QHF_FH_JSI10i_1	212.89	194.27			1.0404	1.095	4.9746	4	1	Median	1.4016	1.133	NaN	1	0	Median	0.98132	1.1389	NaN	1	0	Median	1.0931	1.0583	NaN	1	0	Median	0.99026	1.0307	NaN	1	1	Median	806490000	395930000	410560000	231890000	113020000	118880000	208300000	100210000	108090000	217050000	103490000	113550000	149250000	79216000	70035000	10910	5299;5427	10333	67358;67359;67360;67361	90910;90911;90912;90913;90914;90915;90916;90917;90918;90919	90915			10	
EEFDRLDSSAVLDTGK	1	Unmodified	1780.8479	0.84792262	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								3	1	1	2	57.277	56.45	2	4.3337E-05	48200	160511_QHF_FH_JSI12i_2	123.64	101.41			0.99884	1.0136	8.2093	6	3	Plateau	1.3533	1.1611	8.9985	2	2	Median	0.85417	0.9947	NaN	1	0	Median	1.0321	1.0096	NaN	1	0	Median	0.94871	1.0252	1.9315	2	1	Median	442810000	207290000	235530000	92964000	35990000	56974000	97695000	45846000	51849000	85092000	38502000	46590000	167060000	86948000	80112000	10911	1544	10334	67362;67363;67364;67365;67366;67367;67368	90920;90921;90922;90923;90924;90925;90926;90927;90928;90929	90923			10	
EEFEHQQK	1	Unmodified	1073.4778	0.47778779	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.09	8	7	4				4	1		5	8	6	5	6.5237	4.3552	2;3	1.6611E-15	3670	160511_QHF_FH_JSI9i_1	181.49	152.98			0.91163	0.97227	13.113	24	1	Median	1.178	0.94279	16.864	5	1	Median	0.79469	0.92587	8.7926	8	0	Median	1.0658	1.0462	8.1612	6	0	Median	0.92779	1.0076	17.941	5	0	Median	35942000000	16804000000	19138000000	3123700000	1159400000	1964300000	9310200000	5026400000	4283800000	15219000000	6354000000	8865200000	8288800000	4264100000	4024700000	10912	985	10335	67369;67370;67371;67372;67373;67374;67375;67376;67377;67378;67379;67380;67381;67382;67383;67384;67385;67386;67387;67388;67389;67390;67391;67392	90930;90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948;90949;90950;90951;90952;90953;90954;90955;90956;90957;90958;90959;90960;90961;90962;90963;90964;90965;90966	90956			36	
EEFEHQQKELEK	2	Acetyl (K)	1614.7526	0.75256567	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.495							4	3			1	4	2	35.586	26.079	2;3	1.4973E-12	16314	160513_QHF_FH_JSI11Kac_4	120.84	107.09			0.67971	0.7326	48.603	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0375	1.2367	NaN	1	0	Median	0.40139	0.39739	1.626	2	0	Median	0.70704	0.75534	4.3239	2	0	Median	63733000	41535000	22199000	0	0	0	3705700	1544300	2161500	37504000	27288000	10216000	22523000	12702000	9821100	10913	985	10336	67393;67394;67395;67396;67397;67398;67399	90967;90968;90969;90970;90971;90972;90973;90974;90975;90976	90968	775;776		10	
EEFKPNKPK	3	Unmodified	1115.5975	0.597509	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	8.9309	8.9797	3	0.032458	6661	160511_QHF_FH_JSI11i_3	35.511	11.762			0.79953	0.78708	40.342	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0945	1.0469	NaN	1	0	Median	0.58406	0.59174	NaN	1	0	Median	350730000	214650000	136080000	0	0	0	0	0	0	180710000	100180000	80531000	170020000	114470000	55551000	10914	4628	10337	67400;67401	90977;90978	90977			2	
EEFLFLSPNLDSHGLK	1	Unmodified	1844.9309	0.93086439	2897	Q5JPI3	C3orf38	Uncharacterized protein C3orf38	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		4									1	2	1	87.048	86.342	3	0.0012259	74634	160511_QHF_FH_JSI12i_2	50.827	43.596			0.71662	0.72427	16.897	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65486	0.84215	NaN	1	0	Median	0.71662	0.69736	NaN	1	0	Median	0.86134	0.97696	NaN	1	0	Median	37408000	21065000	16343000	0	0	0	12853000	7138500	5714300	14031000	8799700	5230900	10524000	5127000	5397400	10915	2897	10338	67402;67403;67404;67405	90979;90980	90979			2	
EEFPNENQVVFAR	0	Unmodified	1577.7474	0.74742071	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	58.355	57.626	2	1.726E-09	52343	160511_QHF_FH_JSI11i_1	109.16	92.131			0.95452	0.98125	35.394	3	2	Median	1.4456	1.1967	NaN	1	1	Median	0.53352	0.60164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95452	0.98125	NaN	1	0	Median	127230000	60369000	66861000	45989000	15707000	30282000	33630000	23653000	9976700	0	0	0	47611000	21008000	26602000	10916	4390	10339	67406;67407;67408;67409;67410	90981;90982;90983;90984;90985;90986;90987	90981			7	
EEFRKEFTK	2	Acetyl (K)	1254.6245	0.62445203	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	1	2	42.237	32.377	3	0.0064702	18491	160513_QHF_FH_JSI11Kac_5	64.73	54.776			0.80596	0.92439	42.447	4	0	Median	NaN	NaN	NaN	0	0	Median	0.90971	1.0794	NaN	1	0	Median	0.47619	0.47268	NaN	1	0	Median	0.87253	0.98555	30.983	2	0	Median	46279000	24949000	21330000	0	0	0	9682800	4337200	5345600	25108000	14906000	10202000	11489000	5705600	5783000	10917	2093	10340	67411;67412;67413;67414	90988;90989;90990	90988	2178;2179		3	
EEFTAFLHPEEFEHMK	1	Unmodified	2019.9037	0.90366336	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.16	0.365		16	3							4	3	6	6	81.503	80.816	3;4	1.3899E-07	71062	160511_QHF_FH_JSI11i_2	128.9	121.49			0.91896	0.98297	20.202	19	4	Median	0.98244	0.84337	20.152	4	2	Median	0.7457	0.92165	6.503	3	0	Median	0.99565	1.0043	16.59	6	1	Median	1.0457	1.1653	18.973	6	1	Median	1578300000	808640000	769700000	223230000	110470000	112760000	303440000	166820000	136620000	595230000	294720000	300510000	456440000	236630000	219810000	10918	2652	10341	67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425;67426;67427;67428;67429;67430;67431;67432;67433	90991;90992;90993;90994;90995;90996;90997;90998;90999;91000;91001;91002;91003;91004;91005;91006;91007;91008;91009;91010;91011;91012;91013;91014;91015;91016	91005			24	
EEFTAFLHPEEFEHMK	1	Oxidation (M)	2035.8986	0.89857798	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		72.553	71.928	4	0.016355	63021	160511_QHF_FH_JSI11i_2	33.547	23.798			0.87788	0.8965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87788	0.8965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34495000	16072000	18423000	0	0	0	0	0	0	34495000	16072000	18423000	0	0	0	10919	2652	10341	67434	91017	91017		2069	1	
EEFTAFLHPEEYDYMK	1	Unmodified	2047.8873	0.88734459	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.51	2	14	3							4	5	6	4	84.787	84.176	2;3	7.4219E-66	72713	160511_QHF_FH_JSI12i_2	190.57	174.08			1.0726	1.0623	10.075	18	6	Median	1.1848	1.0055	7.5851	4	0	Median	0.86715	1.0467	9.1209	4	2	Median	1.1513	1.144	7.4175	6	3	Median	0.9207	1.0086	14.29	4	1	Median	3259600000	1611400000	1648200000	470130000	239560000	230570000	963120000	501040000	462080000	1072400000	523520000	548910000	753940000	347320000	406620000	10920	388	10342	67435;67436;67437;67438;67439;67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450;67451;67452;67453	91018;91019;91020;91021;91022;91023;91024;91025;91026;91027;91028;91029;91030;91031;91032;91033;91034;91035;91036;91037;91038;91039;91040;91041;91042;91043;91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055;91056;91057;91058;91059;91060;91061;91062;91063;91064	91023			47	
EEFTAFLHPEEYDYMK	1	Oxidation (M)	2063.8823	0.88225921	388	O43852	CALU	Calumenin	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	76.292	75.373	3	0.0027437	66575	160511_QHF_FH_JSI9i_2	43.557	38.014			0.95342	1.1622	0.21287	3	0	Plateau	1.3505	1.1622	NaN	1	0	Median	0.95342	1.162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0872	1.1664	NaN	1	0	Median	137790000	65835000	71960000	38368000	16046000	22321000	54797000	24364000	30433000	0	0	0	44630000	25424000	19206000	10921	388	10342	67454;67455;67456	91065;91066;91067	91066		158	3	
EEFTEALR	0	Unmodified	993.47673	0.47672516	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.594	36.981	2	0.0087012	33106	160511_QHF_FH_JSI11i_1	56.721	36.166			1.3089	1.2757	13.229	4	0	Median	1.3978	1.1704	NaN	1	0	Median	1.2257	1.3992	NaN	1	0	Median	1.4181	1.3904	NaN	1	0	Median	1.0327	1.0701	NaN	1	0	Median	432740000	204880000	227860000	78983000	35823000	43160000	119200000	55832000	63373000	139380000	65046000	74330000	95172000	48174000	46998000	10922	1316	10343	67457;67458;67459;67460	91068;91069;91070	91068			3	
EEFTSGGPLGQK	1	Unmodified	1248.5986	0.59863121	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	41.389	35.573	2	1.4673E-06	31075	160511_QHF_FH_JSI9i_1	126.31	94.783			0.56823	0.49065	61.493	5	3	Median	0.56823	0.47564	NaN	1	0	Median	0.59803	0.70986	NaN	1	1	Median	0.92998	0.89186	NaN	1	1	Median	0.28081	0.29618	71.385	2	1	Median	867240000	563770000	303480000	345260000	191090000	154170000	2797500	1850400	947140	3254900	1811000	1443900	515930000	369020000	146910000	10923	1553	10344	67461;67462;67463;67464;67465	91071;91072;91073;91074;91075	91073			5	
EEFVEDAAALK	1	Unmodified	1220.5925	0.5924832	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.404	51.738	2	0.00045305	47027	160511_QHF_FH_JSI12i_1	86.882	57.795			0.94689	1.0144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94689	1.0144	NaN	1	1	Median	91866000	46735000	45131000	0	0	0	0	0	0	0	0	0	91866000	46735000	45131000	10924	4704	10345	67466	91076	91076			1	
EEFVLAAQK	1	Unmodified	1033.5444	0.5444108	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.37	4					1	4			1	3	3	2	47.341	41.3	2	8.573E-07	36415	160511_QHF_FH_JSI9i_1	136.16	67.734			1.4233	1.2107	50.618	9	5	Median	1.4233	1.1526	NaN	1	0	Median	1.0008	1.1671	59.527	3	2	Median	1.8093	1.7816	62.972	3	2	Median	1.4201	1.4981	48.658	2	1	Median	822890000	376020000	446870000	174910000	81668000	93239000	219830000	97199000	122630000	234880000	108390000	126490000	193270000	88757000	104520000	10925	5345	10346	67467;67468;67469;67470;67471;67472;67473;67474;67475	91077;91078;91079;91080;91081;91082;91083;91084;91085;91086;91087;91088	91085			11	
EEGDYVLVLK	1	Unmodified	1163.6074	0.60740498	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	61.19	60.467	2	1.0814E-05	54744	160511_QHF_FH_JSI11i_1	104.2	87.658			1.0582	0.88433	18.157	3	0	Median	1.0582	0.87475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.24	1.2044	NaN	1	0	Median	0.85433	0.88433	NaN	1	0	Median	229540000	102560000	126980000	80029000	33225000	46804000	0	0	0	75153000	29362000	45790000	74357000	39969000	34388000	10926	2508	10347	67476;67477;67478	91089;91090;91091	91089			3	
EEGFPIRPHYFWPLLVGR	0	Unmodified	2212.1582	0.15817898	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.294	80.361	4	0.00021385	44247	160513_QHF_FH_JSI9Kac_6	69.111	64.759			0.99559	1.1742	7.0019	3	0	Plateau	1.314	1.1239	NaN	1	0	Median	0.99559	1.1742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94899	1.0238	NaN	1	0	Median	573150000	269180000	303970000	151910000	66801000	85111000	358320000	163470000	194850000	0	0	0	62920000	38904000	24016000	10927	1544	10348	67479;67480;67481	91092;91093;91094	91092			3	
EEGGFEYK	1	Unmodified	957.40798	0.40797689	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	20.776	20.482	2	0.0070881	17572	160511_QHF_FH_JSI11i_1	60.59	22.352			1.0937	1.0597	21.684	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2149	1.4111	NaN	1	0	Median	1.0937	1.0597	NaN	1	0	Median	0.90102	0.92236	NaN	1	0	Median	235410000	124080000	111330000	0	0	0	69668000	35052000	34616000	96991000	48250000	48741000	68751000	40779000	27972000	10928	5708	10349	67482;67483;67484	91095	91095			1	
EEGGLYR	0	Unmodified	822.38718	0.38718187	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.13	10.731	2	0.013952	8646	160511_QHF_FH_JSI12i_1	66.994	31.888			0.88354	0.86676	15.097	4	0	Median	1.0748	0.88935	NaN	1	0	Median	0.89681	1.0812	NaN	1	0	Median	0.87047	0.84474	NaN	1	0	Median	0.72389	0.75299	NaN	1	0	Median	2397000000	1259800000	1137300000	493190000	223160000	270030000	676840000	376090000	300750000	667370000	360230000	307140000	559610000	300290000	259330000	10929	4443	10350	67485;67486;67487;67488	91096;91097;91098;91099;91100;91101;91102;91103	91099			8	
EEGIENFDVYAIK	1	Unmodified	1525.73	0.73003931	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.505	74.013	2	3.1889E-22	67498	160511_QHF_FH_JSI12i_1	176.78	127.36			0.92845	1.0382	20.049	4	0	Median	0.91113	0.74941	NaN	1	0	Median	0.9054	1.0659	NaN	1	0	Median	1.209	1.2006	NaN	1	0	Median	0.94609	1.0112	NaN	1	0	Median	451330000	249610000	201720000	110950000	62001000	48952000	113660000	69572000	44088000	134160000	62785000	71377000	92557000	55252000	37305000	10930	3175	10351	67489;67490;67491;67492	91104;91105;91106;91107;91108;91109;91110	91105			7	
EEGIEYK	1	Unmodified	866.40216	0.40216323	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.001	15.532	2	0.0020489	13177	160511_QHF_FH_JSI12i_1	113.7	70.696			0.77037	0.98709	8.1747	4	0	Linear	1.2213	0.99422	NaN	1	0	Median	0.83425	0.98741	NaN	1	0	Median	0.9977	0.98678	NaN	1	0	Median	0.80999	0.84034	NaN	1	0	Median	1837300000	943680000	893600000	386250000	167320000	218930000	490880000	298570000	192310000	422170000	207650000	214520000	538000000	270150000	267850000	10931	935	10352	67493;67494;67495;67496	91111;91112;91113;91114;91115;91116;91117;91118	91113			8	
EEGIEYKVGK	2	Acetyl (K)	1192.5976	0.59756858	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		47.173	37.869	2	0.032238	21121	160513_QHF_FH_JSI11Kac_3	46.891	34.665			0.5874	0.6273	47.615	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74337	0.87841	NaN	1	0	Median	0.46416	0.44798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4696600	2708900	1987700	0	0	0	1884500	867100	1017400	2812000	1841800	970250	0	0	0	10932	935	10353	67497;67498	91119	91119	689		1	
EEGMVPFIFVGTR	0	Unmodified	1480.7384	0.73843593	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	96.243	95.972	2	0.0058863	84923	160511_QHF_FH_JSI10i_2	61.353	36.562			0.96646	1.0209	10.385	5	5	Median	1.1889	0.99343	NaN	1	1	Median	0.96646	1.1885	NaN	1	1	Median	0.97395	0.95269	9.7734	2	2	Median	0.91515	1.0344	NaN	1	1	Median	55519000	26357000	29162000	8108400	4518100	3590200	9229300	5292400	3936900	26994000	11132000	15862000	11188000	5414600	5773100	10933	1726	10354	67499;67500;67501;67502;67503	91120;91121;91122;91123;91124	91124			5	
EEGMVPFIFVGTR	0	Oxidation (M)	1496.7334	0.73335055	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		83.861	73.334	2	0.041594	38735	160513_QHF_FH_JSI11Kac_5	35.414	28.389			0.83899	0.77856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83899	0.77856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1317600	649020	668590	0	0	0	0	0	0	1317600	649020	668590	0	0	0	10934	1726	10354	67504	91125	91125			1	
EEGNELVK	1	Unmodified	916.45018	0.45017606	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		19.215	11.797	2	0.013508	8271	160513_QHF_FH_JSI11Kac_3	61.999	18.753			0.88225	0.9659	6.9293	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85637	1.0144	NaN	1	0	Median	0.90891	0.91971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8173900	4009900	4163900	0	0	0	2476800	1328700	1148000	5697100	2681200	3015900	0	0	0	10935	2707	10355	67505;67506	91126	91126			1	
EEGNEQFK	1	Unmodified	979.42469	0.42468959	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	9.0569	8.6924	2	0.016399	6425	160511_QHF_FH_JSI11i_1	49.57	24.938			0.77953	0.76474	55.221	5	1	Median	0.77953	0.64481	NaN	1	0	Median	1.3672	1.6374	NaN	1	0	Median	0.50576	0.50066	NaN	1	0	Median	1.0846	1.1307	55.31	2	1	Median	742390000	385690000	356710000	197240000	101390000	95848000	128730000	48133000	80600000	135320000	95829000	39491000	281100000	140330000	140770000	10936	4293	10356	67507;67508;67509;67510;67511	91127;91128;91129;91130	91127			3	
EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK	2	Unmodified	3484.729	0.72898327	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1		By MS/MS		By matching	1	0	3										2		1	100.84	100.78	3;4	1.0186E-15	91490	160511_QHF_FH_JSI10i_1	74.28	72.491			0.88318	0.96044	22.283	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.6673	0.78292	3.5722	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1281	1.1488	NaN	1	0	Median	207810000	99151000	108660000	0	0	0	123230000	58083000	65147000	0	0	0	84578000	41068000	43511000	10937	1192	10357	67512;67513;67514	91131;91132	91131			2	
EEGSENAVK	1	Unmodified	961.43525	0.43525428	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	3	3	2	5.7672	1.5915	2	8.7366E-05	3142	160511_QHF_FH_JSI11i_1	94.85	67.888			1.0857	1.0085	25.247	9	0	Median	1.2317	0.9939	NaN	1	0	Median	1.0857	1.2318	40.287	3	0	Median	1.0565	1.0085	5.5522	3	0	Median	0.9941	1.05	19.9	2	0	Median	1278200000	579790000	698430000	235110000	105080000	130030000	293190000	119760000	173430000	397530000	184030000	213500000	352390000	170930000	181470000	10938	4992	10358	67515;67516;67517;67518;67519;67520;67521;67522;67523	91133;91134;91135;91136;91137;91138;91139;91140;91141	91133			7	
EEGSPLELER	0	Unmodified	1157.5564	0.55643205	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		37.426	37.107	2	0.001886	33475	160511_QHF_FH_JSI11i_1	63.184	47.924			2.6215	2.8004	41.754	2	0	Median	NaN	NaN	NaN	0	0	Median	3.2052	3.7622	NaN	1	0	Median	2.1441	2.0845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	267910000	130390000	137510000	0	0	0	122570000	61950000	60622000	145330000	68440000	76893000	0	0	0	10939	895	10359	67524;67525	91142;91143;91144	91143			3	
EEGSWKK	2	Unmodified	862.41848	0.418482	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.2603	6.358	2	0.043477	3938	160511_QHF_FH_JSI12i_3	46.016	12.277			0.72175	0.74286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72175	0.74286	NaN	1	0	Median	112710000	54508000	58206000	0	0	0	0	0	0	0	0	0	112710000	54508000	58206000	10940	822	10360	67526	91145	91145			1	
EEGVIDSSDK	1	Unmodified	1077.4826	0.4825984	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	6				3					1	2	3	3	14.482	13.003	2	2.473E-09	11101	160511_QHF_FH_JSI12i_1	128.27	69.064			0.93128	0.93673	24.742	6	4	Median	1.059	0.86662	NaN	1	0	Median	0.84845	1.0125	NaN	1	0	Median	0.9062	0.89588	49.32	2	2	Median	0.87073	0.93639	21.932	2	2	Median	568200000	319920000	248280000	101100000	44119000	56983000	124620000	69047000	55570000	248680000	156310000	92376000	93803000	50450000	43352000	10941	1839	10361	67527;67528;67529;67530;67531;67532;67533;67534;67535	91146;91147;91148;91149;91150;91151;91152;91153;91154;91155	91150			10	
EEGVLTLWR	0	Unmodified	1101.5819	0.58185893	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		70.936	70.238	2	0.019984	61494	160511_QHF_FH_JSI11i_2	58.433	39.651			1.265	1.3987	9.7515	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2171	1.4985	NaN	1	0	Median	1.3148	1.3055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75470000	27489000	47981000	0	0	0	24837000	8066600	16770000	50633000	19422000	31211000	0	0	0	10942	2198	10362	67536;67537	91156;91157;91158	91156			3	
EEGVRDVLK	1	Unmodified	1043.5611	0.56112349	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	24.069	23.202	3	0.0061762	19191	160511_QHF_FH_JSI11i_2	45.161	13.227			1.1969	1.229	23.543	4	0	Median	1.3409	1.132	NaN	1	0	Median	1.0847	1.3422	NaN	1	0	Median	1.3207	1.3344	NaN	1	0	Median	0.73186	0.81221	NaN	1	0	Median	303320000	150200000	153120000	53661000	22700000	30960000	61348000	30859000	30489000	114310000	53300000	61007000	74008000	43343000	30666000	10943	1520	10363	67538;67539;67540;67541	91159	91159			1	
EEGWWVVIGDAK	1	Unmodified	1387.6772	0.67721588	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.92	87.967	2	0.0014913	76029	160511_QHF_FH_JSI12i_2	64.439	56.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10944	552	10364	67542	91160	91160			1	
EEHEVAVLGAPHNPAPPTSTVIHIR	0	Unmodified	2670.3878	0.38779758	2171	Q01628	IFITM3	Interferon-induced transmembrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	59.481	58.956	4;5	7.6082E-07	51629	160511_QHF_FH_JSI11i_3	66.3	62.772			1.1562	1.1891	14.838	4	0	Median	1.1582	1.0213	NaN	1	0	Median	1.0882	1.3523	NaN	1	0	Median	1.1542	1.0598	NaN	1	0	Median	1.2888	1.3342	NaN	1	0	Median	351630000	183810000	167820000	33039000	21953000	11086000	48376000	21855000	26520000	153010000	86016000	66997000	117200000	53987000	63217000	10945	2171	10365	67543;67544;67545;67546	91161;91162;91163;91164;91165	91161			3	
EEHGGLIR	0	Unmodified	909.46683	0.46682918	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	10.066	9.5099	2	0.025439	6939	160511_QHF_FH_JSI11i_2	44.117	16.412			0.91154	1.0206	8.0927	3	1	Median	1.0635	0.89124	NaN	1	0	Median	0.83039	1.0297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91154	1.0206	NaN	1	0	Median	254210000	124210000	130000000	74614000	30388000	44225000	94685000	50462000	44224000	0	0	0	84916000	43363000	41553000	10946	1274	10366	67547;67548;67549;67550	91166;91167;91168	91167			3	
EEHPFEK	1	Unmodified	914.4134	0.41339662	649	O95166	GABARAP	Gamma-aminobutyric acid receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	9.2223	8.7601	2;3	0.0066751	6410	160511_QHF_FH_JSI11i_2	50.607	34.067			1.0123	1.1403	22.264	7	1	Median	1.2642	1.0638	42.219	2	0	Median	1.0384	1.2384	NaN	1	1	Median	1.0118	1.0238	30.279	2	0	Median	1.0068	1.122	2.291	2	0	Median	670480000	343030000	327450000	126900000	53483000	73421000	50487000	26240000	24247000	295660000	158550000	137120000	197420000	104760000	92661000	10947	649	10367	67551;67552;67553;67554;67555;67556;67557	91169;91170;91171;91172;91173;91174;91175	91174			7	
EEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIK	1	Unmodified	3869.0026	0.0026389321	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.03	98.305	3	8.9416E-66	58162	160513_QHF_FH_JSI10Kac_6	169.39	161.56			1.0811	1.2645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0811	1.2645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87635000	45576000	42059000	0	0	0	87635000	45576000	42059000	0	0	0	0	0	0	10948	2518	10368	67558	91176;91177	91176			2	
EEIALTSGEWEVLAR	0	Unmodified	1701.8574	0.85736509	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			86.516	86.386	2	0.00077755	78347	160511_QHF_FH_JSI10i_1	84.718	59.926			0.70336	0.83115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70336	0.83115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15631000	9179100	6451500	0	0	0	15631000	9179100	6451500	0	0	0	0	0	0	10949	3308	10369	67559	91178	91178			1	
EEIATAIYSGDK	1	Unmodified	1295.6245	0.62451161	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.917	43.695	2	0.0028777	38793	160511_QHF_FH_JSI9i_1	68.536	47.261			0.34019	0.28872	NaN	1	1	Median	0.34019	0.28872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31242000	19944000	11298000	31242000	19944000	11298000	0	0	0	0	0	0	0	0	0	10950	5134	10370	67560	91179	91179			1	
EEIDREFHNK	1	Unmodified	1315.6157	0.61567826	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.033	14.107	3	0.016173	10910	160511_QHF_FH_JSI12i_3	31.843	16.967			1.4771	1.4828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4771	1.4828	NaN	1	0	Median	62262000	29526000	32735000	0	0	0	0	0	0	0	0	0	62262000	29526000	32735000	10951	3625	10371	67561	91180	91180			1	
EEIDSILNK	1	Unmodified	1059.5448	0.54480473	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	52.248	48.623	2	4.8809E-06	43810	160511_QHF_FH_JSI11i_1	117.72	37.261			1.0127	0.95885	20.806	6	1	Median	1.0231	0.83254	NaN	1	0	Median	1.012	1.1663	27.207	2	0	Median	1.0328	1.0184	9.0162	2	0	Median	0.74215	0.79345	NaN	1	1	Median	1319600000	679420000	640180000	287000000	142700000	144300000	343540000	198660000	144890000	331700000	165950000	165750000	357350000	172110000	185240000	10952	1784	10372	67562;67563;67564;67565;67566;67567;67568	91181;91182;91183;91184;91185	91181			5	
EEIEASNIDNVVLDEDR	0	Unmodified	1958.9069	0.90689406	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	69.13	68.705	2	5.146E-22	62516	160511_QHF_FH_JSI12i_1	207.39	192.19			1.195	1.2223	26.195	3	2	Median	NaN	NaN	NaN	0	0	Median	0.71091	0.81044	NaN	1	1	Median	1.3975	1.3188	NaN	1	1	Median	1.195	1.2223	NaN	1	0	Median	77786000	37277000	40509000	0	0	0	21472000	13338000	8133800	24961000	7669500	17292000	31353000	16269000	15084000	10953	116	10373	67569;67570;67571	91186;91187;91188;91189	91187			4	
EEIEQSLTK	1	Unmodified	1075.5397	0.53971935	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	28.999	26.246	2	0.00069397	23368	160511_QHF_FH_JSI12i_1	86.67	50.79			0.67561	0.75543	27.557	4	3	Median	1.1655	0.96024	NaN	1	1	Median	0.58406	0.69256	NaN	1	0	Median	0.50359	0.50528	NaN	1	1	Median	0.7815	0.82401	NaN	1	1	Median	659160000	351450000	307710000	188300000	85622000	102680000	260490000	134680000	125810000	6333000	3946500	2386500	204030000	127200000	76835000	10954	2525	10374	67572;67573;67574;67575	91190;91191;91192;91193;91194	91190			5	
EEIFGPVMQILK	1	Unmodified	1402.753	0.75302336	824	P05091	ALDH2	Aldehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	88.376	87.676	2	0.00025828	75864	160511_QHF_FH_JSI12i_2	76.827	0			0.95327	0.9232	2.5206	2	0	Median	1.0985	0.9398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82722	0.90689	NaN	1	0	Median	39481000	18835000	20646000	23590000	10558000	13033000	0	0	0	0	0	0	15891000	8277600	7613200	10955	824	10375	67576;67577	91195;91196	91195			2	
EEIFGPVQPLFK	1	Unmodified	1402.7497	0.74965254	1365	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			87.804	87.686	2	0.006815	79720	160511_QHF_FH_JSI10i_1	64.04	60.508			1.3586	1.5055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3586	1.5055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19295000	8136200	11159000	0	0	0	19295000	8136200	11159000	0	0	0	0	0	0	10956	1365	10376	67578	91197	91197			1	
EEIGNVQLEK	1	Unmodified	1157.5928	0.59281755	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	38.2	37.501	2	1.0941E-06	33112	160511_QHF_FH_JSI9i_1	126.39	81.94			0.77982	0.74705	30.679	3	3	Plateau	0.5347	0.43498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77982	0.74705	NaN	1	1	Median	0.68665	0.73266	NaN	1	1	Median	868020000	494690000	373330000	300700000	187650000	113050000	0	0	0	310030000	171450000	138580000	257290000	135590000	121700000	10957	3328	10377	67579;67580;67581	91198;91199;91200	91200			3	
EEIIPVAAEYDK	1	Unmodified	1375.6871	0.68711187	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	64.322	60.233	2	0.00027488	54474	160511_QHF_FH_JSI11i_1	91.701	81.748			1.2582	1.3667	29.339	5	2	Median	NaN	NaN	NaN	0	0	Median	1.4787	1.7147	32.081	2	0	Median	1.23	1.1839	31.936	2	1	Median	1.2582	1.3522	NaN	1	1	Median	1338100000	535350000	802720000	0	0	0	455190000	181890000	273300000	485360000	204200000	281160000	397520000	149260000	248260000	10958	997	10378	67582;67583;67584;67585;67586	91201;91202;91203;91204;91205;91206;91207	91202			7	
EEIKDDNPHLK	2	Unmodified	1336.6623	0.6622941	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.11	0.314		8	1							1		4	4	14.383	13.953	2;3	1.1222E-05	11614	160511_QHF_FH_JSI9i_2	87.363	72.487			1.057	1.0653	50.14	6	4	Median	1.1698	0.97982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2003	1.2104	110.53	2	2	Median	0.94889	1.0703	4.5595	3	2	Plateau	481250000	187950000	293290000	73912000	26803000	47108000	0	0	0	255160000	94709000	160450000	152180000	66442000	85734000	10959	4832	10379	67587;67588;67589;67590;67591;67592;67593;67594;67595	91208;91209;91210;91211;91212;91213;91214;91215;91216;91217	91212			10	
EEILAQAK	1	Unmodified	900.49165	0.49164694	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	26.066	21.599	2	0.0027019	12854	160513_QHF_FH_JSI12Kac_3	89.369	35.69			0.88358	0.92402	21.49	6	3	Median	0.766	0.62166	NaN	1	1	Median	0.80457	0.95149	NaN	1	0	Median	1.0361	1.0185	17.905	2	1	Median	0.93293	0.97931	12.545	2	1	Median	600070000	325460000	274610000	227300000	132840000	94465000	3206200	1702700	1503500	210260000	108580000	101680000	159310000	82341000	76965000	10960	1436	10380	67596;67597;67598;67599;67600;67601	91218;91219;91220;91221;91222;91223;91224	91223			7	
EEILENWNMFVGSQATNYGEDLTK	1	Unmodified	2787.2698	0.26977544	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	101.27	101.17	2;3	0	91727	160511_QHF_FH_JSI12i_1	451.26	433.52			0.953	0.92836	12.377	10	6	Median	1.1716	0.96186	18.485	2	1	Median	0.71725	0.83468	8.471	3	2	Median	0.96688	0.9549	3.6517	3	2	Median	0.99493	1.0421	6.9583	2	1	Median	2221400000	1213000000	1008500000	139230000	72369000	66861000	862100000	514580000	347520000	529080000	251300000	277780000	691030000	374720000	316310000	10961	2652	10381	67602;67603;67604;67605;67606;67607;67608;67609;67610;67611	91225;91226;91227;91228;91229;91230;91231;91232;91233;91234	91230			10	
EEILENWNMFVGSQATNYGEDLTK	1	Oxidation (M)	2803.2647	0.26469006	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	100.21	100.07	3	1.1073E-07	90615	160511_QHF_FH_JSI12i_1	72.935	70.211			0.74211	0.74309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74211	0.74309	NaN	1	1	Median	16921000	11296000	5625200	0	0	0	0	0	0	0	0	0	16921000	11296000	5625200	10962	2652	10381	67612	91235	91235		2070	1	
EEIPEEELAEDVEEIDHAER	0	Unmodified	2380.0554	0.055408792	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.073	86.587	3	0.00024877	78814	160511_QHF_FH_JSI12i_1	57.989	48.825			1.6023	1.579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6023	1.579	NaN	1	1	Median	12014000	1991400	10023000	0	0	0	0	0	0	0	0	0	12014000	1991400	10023000	10963	1168	10382	67613	91236	91236			1	
EEIQETQTPTHSR	0	Unmodified	1554.7274	0.72741355	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	1	3	2	11.903	11.375	2;3	6.8232E-13	8763	160511_QHF_FH_JSI11i_2	146.16	110.94			1.0916	1.1046	16.183	4	0	Median	1.1111	0.96995	NaN	1	0	Median	1.0723	1.3117	NaN	1	0	Median	1.2778	1.255	NaN	1	0	Median	0.85736	0.97227	NaN	1	0	Median	181750000	94956000	86789000	42008000	18048000	23961000	32764000	16929000	15836000	55125000	30706000	24419000	51847000	29274000	22574000	10964	4547	10383	67614;67615;67616;67617;67618;67619;67620;67621;67622	91237;91238;91239;91240;91241;91242;91243;91244;91245;91246;91247;91248;91249	91246			13	
EEIQSSISGVTAAYNR	0	Unmodified	1723.8377	0.83769228	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	58.026	53.994	2	2.4932E-116	48424	160511_QHF_FH_JSI10i_1	270.21	222.49			0.90104	0.96087	7.4963	5	0	Median	NaN	NaN	NaN	0	0	Median	0.8273	0.97045	13.114	2	0	Median	0.93578	0.9029	NaN	1	0	Median	0.92642	0.97782	2.4726	2	0	Median	1130100000	581460000	548610000	0	0	0	381060000	228060000	153000000	333370000	177310000	156060000	415650000	176090000	239560000	10965	1600	10384	67623;67624;67625;67626;67627;67628	91250;91251;91252;91253;91254;91255;91256;91257;91258	91255			8	
EEISEAEPGGGSLGDGRPPEESAHEMMEEEEEIPKPK	2	Unmodified	4005.7732	0.77318564	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			65.251	64.416	5	0.046643	57113	160511_QHF_FH_JSI10i_2	20.745	16.47			0.40537	0.49677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40537	0.49677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27327000	24000000	3326300	0	0	0	27327000	24000000	3326300	0	0	0	0	0	0	10966	1069	10385	67629	91259	91259			1	
EEITGTLRK	1	Unmodified	1045.5768	0.57677356	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.624	17.663	2	0.019724	14243	160511_QHF_FH_JSI12i_3	49.418	25.263			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10967	5616	10386	67630	91260	91260			1	
EEIVHQLPSNKPEELENNVDQILK	2	Unmodified	2814.44	0.43995231	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	75.026	74.506	4	5.8644E-07	64565	160511_QHF_FH_JSI12i_3	69.435	63.274			0.75618	0.82839	27.146	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57258	0.68371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99866	1.0037	NaN	1	0	Median	137640000	90716000	46926000	0	0	0	49544000	37369000	12174000	0	0	0	88098000	53346000	34752000	10968	5590	10387	67631;67632	91261;91262	91262			2	
EEIVQFFSGLEIVPNGITLPVDPEGK	1	Unmodified	2826.4691	0.46912717	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.623	92.902	3	2.2846E-08	54395	160513_QHF_FH_JSI10Kac_6	81.055	69.744			0.43553	0.51916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43553	0.51916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126140000	70043000	56095000	0	0	0	126140000	70043000	56095000	0	0	0	0	0	0	10969	1775	10388	67633	91263	91263			1	
EEKPDSK	2	Acetyl (K)	873.40798	0.40797689	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	1	0	0	1			By MS/MS		12	0					1							1		7.5775	0.29156	2	0.038279	2450	160513_QHF_FH_JSI11Kac_2	71.501	31.398			0.10171	0.098789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10171	0.098789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2374100	2292200	81843	0	0	0	0	0	0	2374100	2292200	81843	0	0	0	10970	1707	10389	67634	91264	91264			1	
EEKPEAK	2	Unmodified	829.41815	0.41814765	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		1.2682	1.1715	3	0.034683	582	160511_QHF_FH_JSI11i_1	37.558	7.3733			4.1443	3.8834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1443	3.8834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63965000	16846000	47118000	0	0	0	0	0	0	63965000	16846000	47118000	0	0	0	10971	2438	10390	67635	91265	91265			1	
EEKYVAK	2	Acetyl (K)	907.4651	0.46509784	2571	Q14739	LBR	Lamin-B receptor	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		19.466	12.048	2	0.058983	8385	160513_QHF_FH_JSI11Kac_3	57.281	19.043			0.56722	0.61768	84.975	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96039	1.1265	NaN	1	0	Median	0.33501	0.3387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7205800	4805200	2400600	0	0	0	1529500	766340	763210	5676300	4038900	1637400	0	0	0	10972	2571	10391	67636;67637	91266	91266			1	
EELADQVLTLK	1	Unmodified	1257.6816	0.68163256	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	67.148	66.499	2	0.0012796	60526	160511_QHF_FH_JSI12i_1	64.792	50.654			1.1226	1.1286	14.556	3	2	Plateau	1.2012	0.9837	NaN	1	1	Median	0.75141	0.88574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1226	1.1809	NaN	1	0	Median	281780000	145200000	136580000	106010000	48264000	57747000	113360000	65746000	47614000	0	0	0	62404000	31185000	31218000	10973	2988	10392	67638;67639;67640	91267;91268;91269	91267			3	
EELALLDGSNVVFK	1	Unmodified	1532.8086	0.80862399	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	88.652	88.25	2;3	2.4377E-05	80039	160511_QHF_FH_JSI10i_1	108.59	95.762			1.0423	1.0174	26.731	8	0	Median	1.1098	0.92351	NaN	1	0	Median	0.80574	0.93995	46.93	3	0	Median	1.0616	1.0217	1.2887	2	0	Median	1.003	1.046	3.2337	2	0	Median	923400000	483310000	440090000	116400000	52699000	63696000	304580000	180020000	124570000	252770000	117890000	134880000	249650000	132710000	116940000	10974	263	10393	67641;67642;67643;67644;67645;67646;67647;67648;67649	91270;91271;91272;91273;91274;91275;91276;91277;91278;91279;91280;91281;91282;91283;91284;91285	91279			16	
EELAQSQHAQEQEFVQK	1	Unmodified	2027.9548	0.95484731	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	30.972	30.4	3	0.00013468	27349	160511_QHF_FH_JSI12i_1	61.495	46.074			0.98252	1.0033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98252	1.0033	NaN	1	0	Median	31760000	16854000	14907000	0	0	0	0	0	0	0	0	0	31760000	16854000	14907000	10975	4673	10394	67650;67651;67652	91286;91287;91288;91289	91286			4	
EELAQYQK	1	Unmodified	1007.4924	0.49237523	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.371	17.016	2	0.0033082	14578	160511_QHF_FH_JSI12i_1	79.451	38.878			0.5092	0.56031	34.009	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37989	0.44055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68252	0.71264	NaN	1	1	Median	318470000	194300000	124180000	0	0	0	153320000	98294000	55028000	0	0	0	165150000	96003000	69147000	10976	5479	10395	67653;67654	91290;91291	91290			2	
EELAYLKK	2	Acetyl (K)	1034.5648	0.56481189	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	no	no	1	0	0	1			By MS/MS		14	0							1					1		54.936	44.08	2	0.0012975	25545	160513_QHF_FH_JSI11Kac_4	109.01	44.209		+	0.077697	0.076057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.077697	0.076057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15298000	13107000	2191800	0	0	0	0	0	0	15298000	13107000	2191800	0	0	0	10977	65	10396	67655	91292	91292	44		1	
EELDFQK	1	Unmodified	907.42871	0.42871234	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	2	1	3	33.877	29.54	2	0.0015082	26452	160511_QHF_FH_JSI10i_1	119.89	91.781			0.90683	0.92127	13.699	7	0	Median	1.1772	0.97461	NaN	1	0	Median	0.97629	1.1532	4.3735	2	0	Median	0.90683	0.89204	NaN	1	0	Median	0.83428	0.9053	7.6216	3	0	Median	7166400000	3406200000	3760200000	1584400000	777040000	807330000	1898900000	934290000	964580000	1567400000	686830000	880610000	2115800000	1008000000	1107700000	10978	791	10397	67656;67657;67658;67659;67660;67661;67662	91293;91294;91295;91296;91297;91298;91299;91300;91301;91302;91303;91304;91305;91306;91307;91308;91309;91310;91311;91312	91304			20	
EELEEARDIAR	0	Unmodified	1329.6525	0.6524577	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		3	1	28.279	27.51	2;3	0.00010684	23074	160511_QHF_FH_JSI11i_2	105.4	43.434			1.0648	1.0161	10.024	4	1	Median	1.1134	0.94797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0101	1.0041	11.498	2	1	Median	1.0426	1.1332	NaN	1	0	Median	227500000	98107000	129390000	26907000	12887000	14020000	0	0	0	169420000	70526000	98893000	31173000	14695000	16478000	10979	2217	10398	67663;67664;67665;67666;67667	91313;91314;91315;91316;91317	91314			5	
EELEEMLVEK	1	Unmodified	1247.5955	0.59551967	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	62.728	61.973	2	1.8282E-05	56354	160511_QHF_FH_JSI11i_1	98.943	98.943			0.68481	0.62405	21.473	2	1	Median	0.87247	0.72637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53751	0.53614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	248900000	137620000	111280000	116850000	61919000	54929000	0	0	0	132060000	75704000	56352000	0	0	0	10980	2115	10399	67668;67669;67670;67671;67672	91318;91319;91320;91321;91322	91318			5	
EELEEVIK	1	Unmodified	987.51244	0.51244197	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	46.377	42.009	2	0.00021395	37725	160511_QHF_FH_JSI11i_1	119.41	73.391			0.92286	0.96116	10.161	7	0	Median	0.98356	0.78649	NaN	1	0	Median	0.81771	0.95879	1.7936	2	0	Median	0.97093	0.95886	6.7352	2	0	Median	0.95152	1.0273	9.406	2	0	Median	5024300000	2574100000	2450200000	947970000	437650000	510310000	1297000000	677820000	619200000	1483000000	799110000	683890000	1296300000	659530000	636820000	10981	1300	10400	67673;67674;67675;67676;67677;67678;67679	91323;91324;91325;91326;91327;91328;91329;91330;91331;91332;91333;91334;91335;91336;91337;91338;91339;91340;91341;91342	91325			20	
EELEEVIKDI	1	Unmodified	1215.6234	0.62344898	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			81.311	81.156	2	0.050569	73862	160511_QHF_FH_JSI10i_1	51.528	34.988			0.64896	0.77501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64896	0.77501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82368000	49861000	32508000	0	0	0	82368000	49861000	32508000	0	0	0	0	0	0	10982	1300	10401	67680	91343	91343			1	
EELEFEVPFR	0	Unmodified	1293.6241	0.62411768	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								2	1		1	81.946	81.279	2	1.1027E-05	74089	160511_QHF_FH_JSI12i_1	104.01	52.226			1.2623	1.031	12.713	3	1	Median	1.3232	1.113	10.836	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88307	0.93369	NaN	1	0	Median	109760000	48698000	61062000	50035000	19121000	30915000	0	0	0	0	0	0	59725000	29578000	30147000	10983	5658	10402	67681;67682;67683;67684	91344;91345;91346;91347;91348;91349	91345			6	
EELELLK	1	Unmodified	872.4855	0.48549893	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	49.468	48.702	2	0.023222	43315	160511_QHF_FH_JSI9i_1	55.676	0			0.95615	1.0002	13.253	3	0	Median	1.321	1.1207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87029	0.86047	NaN	1	0	Median	0.95615	1.0002	NaN	1	0	Median	76727000	38261000	38466000	29386000	14475000	14911000	0	0	0	27065000	12964000	14101000	20276000	10822000	9454000	10984	655	10403	67685;67686;67687	91350;91351;91352;91353	91353			4	
EELEQASQAHGAR	0	Unmodified	1424.6644	0.66441937	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.6		9					1			3	2	2	3	11.111	9.9034	2;3	6.6233E-22	7663	160511_QHF_FH_JSI11i_2	169.58	139.32			1.0335	1.0737	18.47	10	3	Median	1.3135	1.1381	34.936	3	2	Median	0.81149	0.99903	10.711	2	1	Median	1.0668	1.0689	2.6314	2	0	Median	0.95055	1.0697	5.5329	3	0	Plateau	684940000	333130000	351810000	160680000	70244000	90441000	121890000	70912000	50981000	242800000	112860000	129940000	159570000	79115000	80454000	10985	2587	10404	67688;67689;67690;67691;67692;67693;67694;67695;67696;67697	91354;91355;91356;91357;91358;91359;91360;91361;91362;91363;91364;91365;91366;91367	91363			13	
EELEQGSRPAPTLEEEK	1	Unmodified	1940.9327	0.93271488	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	5											2	3	32.061	31.621	2;3	2.0445E-06	28237	160511_QHF_FH_JSI11i_1	104.44	81.635			1.2398	1.2366	18.844	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1238	1.0939	17.342	2	1	Median	1.2398	1.3158	16.049	3	2	Median	640370000	297090000	343290000	0	0	0	0	0	0	224650000	113100000	111550000	415720000	183990000	231730000	10986	4761	10405	67698;67699;67700;67701;67702	91368;91369;91370;91371;91372;91373	91368			6	
EELEQTYHAK	1	Unmodified	1246.583	0.58298115	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.53	5	8	1				4	1		4	4	5	6	16.344	13.996	2;3	6.7712E-19	11669	160511_QHF_FH_JSI9i_2	174.02	153.12			1.003	1.0304	15.092	18	3	Median	1.197	1.0092	17.936	4	1	Median	0.75108	0.96027	9.4538	3	0	Plateau	1.1307	1.1223	7.8617	5	0	Median	0.85851	0.95274	18.05	6	2	Median	2426400000	1187500000	1238900000	410920000	173100000	237820000	305610000	170530000	135080000	1026800000	475680000	551100000	683100000	368220000	314880000	10987	1180	10406	67703;67704;67705;67706;67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718;67719;67720;67721	91374;91375;91376;91377;91378;91379;91380;91381;91382;91383;91384;91385;91386;91387;91388;91389;91390;91391;91392;91393;91394;91395;91396;91397;91398;91399;91400;91401	91387			28	
EELEQTYHAKLENAR	1	Acetyl (K)	1871.9014	0.90135517	1180	P20700	LMNB1	Lamin-B1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3		1	1	1	1	54.362	43.757	3	0.00012813	22343	160513_QHF_FH_JSI10Kac_5	86.378	55.416			1.0326	1.0785	8.8027	4	0	Median	1.2734	1.0834	NaN	1	0	Median	0.90205	1.0736	NaN	1	0	Median	0.97426	0.9682	NaN	1	0	Median	1.0944	1.2009	NaN	1	0	Median	44752000	21842000	22910000	6570200	3242200	3328000	8998900	5189400	3809500	16155000	7421400	8733700	13028000	5989000	7038600	10988	1180	10407	67722;67723;67724;67725	91402;91403;91404;91405	91405	1035		4	
EELETGKK	2	Unmodified	932.48148	0.48147619	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3									2	4	4	6.071	5.8011	2;3	0.0032195	3608	160511_QHF_FH_JSI11i_2	98.523	49.165			1.0112	1.0404	33.127	10	4	Median	NaN	NaN	NaN	0	0	Median	0.99449	1.1647	49.092	2	0	Median	1.0603	1.0634	38.416	4	2	Median	0.84002	0.88631	25.337	4	2	Median	872980000	454470000	418510000	0	0	0	232450000	121930000	110520000	344840000	182560000	162280000	295690000	149980000	145710000	10989	454	10408	67726;67727;67728;67729;67730;67731;67732;67733;67734;67735	91406;91407;91408;91409;91410;91411;91412	91412			6	
EELFIVSK	1	Unmodified	963.5277	0.5276981	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.8	54.141	2	0.0013515	48966	160511_QHF_FH_JSI11i_1	90.657	52.419			0.92497	0.93312	12.564	4	0	Median	1.411	1.1748	NaN	1	0	Median	0.75846	0.89103	NaN	1	0	Median	0.97242	0.9502	NaN	1	0	Median	0.87983	0.91634	NaN	1	0	Median	312400000	150670000	161730000	63262000	25951000	37312000	83406000	46117000	37289000	90615000	41369000	49246000	75119000	37235000	37884000	10990	1067	10409	67736;67737;67738;67739	91413;91414;91415;91416;91417;91418;91419;91420	91414			8	
EELGDEWLKPELFR	1	Unmodified	1759.8781	0.87810054	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	87.357	86.584	3	0.0011913	76790	160511_QHF_FH_JSI10i_2	56.482	37.659			0.90111	1.04	23.789	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0069	1.2305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80642	0.87899	NaN	1	1	Median	70151000	35365000	34786000	0	0	0	39058000	19040000	20017000	0	0	0	31093000	16324000	14769000	10991	5555	10410	67740;67741	91421;91422;91423	91423			3	
EELGQGLQGVEQK	1	Unmodified	1413.71	0.70997257	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.369	39.924	2	0.00012905	35912	160511_QHF_FH_JSI11i_1	85.813	58.192			0.70651	0.73304	0.45588	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64077	0.73661	NaN	1	0	Median	0.76082	0.72993	NaN	1	0	Median	0.70651	0.73304	NaN	1	0	Median	77893000	44677000	33217000	0	0	0	26817000	17095000	9722800	31771000	16852000	14919000	19305000	10730000	8575400	10992	2252	10411	67742;67743;67744	91424;91425;91426;91427	91424			4	
EELGVTVYQSPHSGSFTITGNNSNFAQR	0	Unmodified	3039.4322	0.43224117	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		69.458	69.458	3	0.0031583	61580	160511_QHF_FH_JSI10i_2	34.125	18.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7922300	0	7922300	0	0	0	0	0	0	7922300	0	7922300	0	0	0	10993	1388	10412	67745;67746	91428;91429	91429			2	
EELINFK	1	Unmodified	891.47018	0.47018322	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	48.249	47.505	2	0.0071824	42751	160511_QHF_FH_JSI10i_1	89.673	15.258			0.98686	0.98163	22.761	4	3	Median	1.1677	0.95251	NaN	1	0	Median	0.83404	1.0116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99813	1.0329	38.861	2	2	Median	256520000	130130000	126390000	43024000	18609000	24415000	65475000	36469000	29006000	0	0	0	148020000	75052000	72968000	10994	5687	10413	67747;67748;67749;67750	91430;91431;91432;91433;91434	91432			5	
EELIPEK	1	Unmodified	856.4542	0.45419881	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		29.416	28.67	2	0.010958	24935	160511_QHF_FH_JSI9i_1	63.565	24.729			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10995	4518;3068	10414	67751;67752	91435;91436	91436			2	
EELIPQLR	0	Unmodified	996.5604	0.56039521	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	55.657	55.242	2	0.010806	50287	160511_QHF_FH_JSI12i_1	54.549	8.8314			1.3702	1.3142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3702	1.3142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31650000	15610000	16040000	0	0	0	0	0	0	31650000	15610000	16040000	0	0	0	10996	4152	10415	67753;67754	91437;91438	91438			2	
EELKELLK	2	Acetyl (K)	1042.591	0.59102664	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	72.711	62.096	2	0.0047621	33166	160513_QHF_FH_JSI10Kac_4	87.308	19.084			2.2151	2.5059	141.64	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78076	0.92044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6.2844	6.8225	NaN	1	1	Median	11675000	4474200	7200600	0	0	0	7310100	3743500	3566600	0	0	0	4364700	730700	3634000	10997	2480	10416	67755;67756	91439;91440	91439	2496		2	
EELLAVGK	1	Unmodified	857.48583	0.48583328	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.944	37.331	2	0.00083418	33140	160511_QHF_FH_JSI9i_1	97.602	22.885			0.7082	0.79316	56.566	4	1	Median	0.55777	0.46186	NaN	1	0	Median	0.59847	0.71104	NaN	1	0	Median	1.8547	1.7897	NaN	1	1	Median	0.83805	0.88476	NaN	1	0	Median	847320000	442590000	404730000	152350000	100040000	52317000	175490000	106090000	69403000	304520000	131530000	172990000	214960000	104930000	110030000	10998	1576	10417	67757;67758;67759;67760	91441;91442;91443;91444;91445	91445			5	
EELLDIK	1	Unmodified	858.46985	0.46984887	4949	Q9NRA8	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	47.541	46.855	2	0.025836	42682	160511_QHF_FH_JSI12i_1	47.657	8.0112			0.60413	0.57859	30.302	3	0	Median	1.1246	0.90468	NaN	1	0	Median	0.44501	0.50759	NaN	1	0	Median	0.60413	0.57859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56794000	34344000	22450000	12733000	7123400	5609600	21563000	12061000	9501500	22499000	15159000	7339100	0	0	0	10999	4949	10418	67761;67762;67763;67764	91446;91447	91446			2	
EELLEYEEK	1	Unmodified	1180.5499	0.54994968	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.98	6					5				2	3	2	4	45.039	40.902	2	0.00042997	36081	160511_QHF_FH_JSI9i_1	90.629	73.243			1.088	1.0983	28.572	10	8	Median	1.7672	1.4505	28.216	2	2	Median	0.85364	1.0065	0.25873	2	1	Median	0.90174	0.8722	40.995	2	1	Median	1.1551	1.2186	23.074	4	4	Median	1940600000	790660000	1149900000	570010000	161580000	408430000	357520000	156590000	200930000	365150000	151650000	213500000	647890000	320840000	327050000	11000	1573	10419	67765;67766;67767;67768;67769;67770;67771;67772;67773;67774;67775	91448;91449;91450;91451;91452;91453;91454;91455;91456;91457;91458;91459;91460;91461	91457			14	
EELLFGGK	1	Unmodified	891.47018	0.47018322	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		46.892	46.205	2	0.0033065	41642	160511_QHF_FH_JSI11i_1	79.469	8.5561			1.8532	2.1606	32.823	3	3	Median	1.4681	1.2265	NaN	1	1	Median	1.8532	2.1703	NaN	1	1	Median	2.2234	2.1606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	313090000	114660000	198430000	78248000	31647000	46601000	147170000	51060000	96107000	87675000	31953000	55722000	0	0	0	11001	1785	10420	67776;67777;67778	91462;91463;91464	91462			3	
EELLFMK	1	Unmodified	908.46774	0.46774038	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.25	4	5	2				3	4		5	5	4	4	65.813	61.094	2	0.00018267	53003	160511_QHF_FH_JSI11i_2	138.62	138.62			0.99455	1.0343	10.43	18	3	Median	1.1972	0.99073	11.297	5	2	Median	0.86194	1.0353	8.5157	5	1	Median	1.0487	1.0735	3.5916	4	0	Linear	0.96684	1.0495	11.911	4	0	Median	15044000000	7178000000	7866200000	4166100000	1809000000	2357100000	3332400000	1544700000	1787700000	4766500000	2503600000	2262900000	2779200000	1320700000	1458500000	11002	842	10421	67779;67780;67781;67782;67783;67784;67785;67786;67787;67788;67789;67790;67791;67792;67793;67794;67795;67796	91465;91466;91467;91468;91469;91470;91471;91472;91473;91474;91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488;91489;91490;91491;91492;91493;91494;91495;91496;91497;91498;91499;91500;91501;91502;91503;91504;91505;91506;91507	91499			43	
EELLFMK	1	Oxidation (M)	924.46266	0.462655	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6		4					4			2	2	1	3	52.265	45.661	2	0.0055138	25898	160513_QHF_FH_JSI12Kac_4	104.11	89.698			0.71095	0.84771	23.778	7	5	Median	0.71095	0.60006	NaN	1	1	Median	0.73068	0.89839	4.0201	2	1	Median	0.6957	0.68327	NaN	1	1	Median	0.78653	0.84771	31.572	3	2	Median	232450000	126670000	105780000	61304000	33041000	28262000	79150000	43065000	36084000	5431000	3150500	2280400	86567000	47411000	39156000	11003	842	10421	67797;67798;67799;67800;67801;67802;67803;67804	91508;91509;91510;91511;91512;91513;91514;91515;91516	91515		358	9	
EELLFMKK	2	Unmodified	1036.5627	0.5627034	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.2	0.4		4	1							2		1	2	47.319	46.467	2;3	0.0031674	40094	160511_QHF_FH_JSI11i_2	60.59	54.487			1.0415	1.0478	28.458	5	2	Median	0.98306	0.84814	29.898	2	1	Median	NaN	NaN	NaN	0	0	Median	1.201	1.2072	NaN	1	1	Median	0.80945	0.87955	37.887	2	0	Median	362820000	167640000	195170000	71203000	31706000	39497000	0	0	0	116620000	40735000	75881000	175000000	95204000	79796000	11004	842	10422	67805;67806;67807;67808;67809	91517;91518;91519;91520;91521;91522;91523	91523			7	
EELLFMKK	2	Acetyl (K)	1078.5733	0.57326808	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.1	0.781						2	3	3			3	3	2	75.441	65.339	2	8.4007E-10	34428	160513_QHF_FH_JSI10Kac_4	154.31	143.43			0.53933	0.58198	76.226	8	0	Median	NaN	NaN	NaN	0	0	Median	1.3348	1.5686	13.331	3	0	Median	0.31661	0.29864	33.555	3	0	Median	0.53267	0.58198	10.516	2	0	Median	433690000	262170000	171520000	0	0	0	187030000	83405000	103630000	155990000	118200000	37792000	90660000	60562000	30098000	11005	842	10422	67810;67811;67812;67813;67814;67815;67816;67817	91524;91525;91526;91527;91528;91529;91530;91531;91532;91533;91534;91535	91524	496		12	
EELLFMKK	2	Acetyl (K);Oxidation (M)	1094.5682	0.56818271	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14	0.775						3	4	3			4	3	3	63.641	53.269	2	0.00044174	29688	160513_QHF_FH_JSI11Kac_4	113.89	66.146			0.50688	0.5419	87.243	8	1	Median	NaN	NaN	NaN	0	0	Median	1.2871	1.4837	55.452	3	1	Median	0.2976	0.29514	6.3274	3	0	Median	0.50688	0.5419	8.1803	2	0	Median	164340000	123500000	40841000	0	0	0	15116000	6547500	8568600	120670000	94977000	25693000	28554000	21974000	6579600	11006	842	10422	67818;67819;67820;67821;67822;67823;67824;67825;67826;67827	91536;91537;91538;91539;91540;91541;91542;91543;91544;91545;91546;91547;91548	91538	496	358	13	
EELMFFLWAPELAPLK	1	Unmodified	1933.0059	0.0059435859	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	1		2	99.608	91.025	2;3	4.999E-75	55038	160513_QHF_FH_JSI10Kac_6	227.31	201.27			1.1976	1.1103	23.36	5	0	Median	1.234	1.0697	5.2799	2	0	Median	0.91207	1.0941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3678	1.4498	33.106	2	0	Median	1058300000	478010000	580300000	309170000	136670000	172500000	469050000	217240000	251810000	0	0	0	280090000	124100000	155990000	11007	1925	10423	67828;67829;67830;67831;67832	91549;91550;91551;91552;91553	91553			5	
EELMSSDLEETAGSTSIPK	1	Unmodified	2022.9303	0.93033162	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.925	64.294	2	6.7672E-19	58518	160511_QHF_FH_JSI12i_1	190.27	175.71			0.74112	0.73464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74112	0.73464	NaN	1	1	Median	14728000	9830000	4897700	0	0	0	0	0	0	0	0	0	14728000	9830000	4897700	11008	153	10424	67833;67834	91554;91555	91555			2	
EELNAISGPNEFAEFYNR	0	Unmodified	2098.9596	0.95959833	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.83	0.373	1	5								2	2		2	83.534	82.616	2	1.7582E-29	73637	160511_QHF_FH_JSI9i_1	229.32	214.45			1.1814	1.3907	35.068	4	4	Median	2.3053	1.8813	NaN	1	1	Median	1.096	1.3428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99502	1.0817	40.495	2	2	Median	144380000	63784000	80592000	101570000	41387000	60183000	24997000	15462000	9534300	0	0	0	17810000	6934800	10875000	11009	2319	10425	67835;67836;67837;67838;67839;67840	91556;91557;91558;91559;91560;91561	91558			6	
EELNALK	1	Unmodified	815.43888	0.43888309	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		22.872	22.2	2	0.017878	18923	160511_QHF_FH_JSI9i_1	60.799	14.135			0.75926	0.67695	11.204	2	0	Median	0.89547	0.73277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64378	0.62539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236740000	142800000	93939000	137900000	69244000	68656000	0	0	0	98842000	73558000	25284000	0	0	0	11010	2804	10426	67841;67842	91562	91562			1	
EELNENQSTPK	1	Unmodified	1287.5943	0.59427411	3237	Q7L7X3	TAOK1	Serine/threonine-protein kinase TAO1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.881	12.467	2	0.00068099	10308	160511_QHF_FH_JSI12i_1	73.885	45.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11011	3237	10427	67843	91563	91563			1	
EELPVIPK	1	Unmodified	923.53278	0.53278348	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	53.391	48.97	2	0.0028402	43891	160511_QHF_FH_JSI11i_1	77.058	48.635			0.98308	0.92547	16.734	7	0	Median	1.0326	0.84906	NaN	1	0	Median	0.67132	0.78463	13.934	2	0	Median	1.1211	1.095	5.6147	2	0	Median	0.94089	1.0063	11.84	2	0	Median	738640000	386110000	352530000	187360000	90217000	97139000	171960000	102220000	69741000	204560000	104060000	100510000	174760000	89619000	85141000	11012	4744	10428	67844;67845;67846;67847;67848;67849;67850	91564;91565;91566;91567;91568;91569;91570;91571;91572;91573;91574;91575;91576	91566			13	
EELQANGSAPAADK	1	Unmodified	1399.6579	0.657937	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	20.914	17.543	2	3.0402E-21	14987	160511_QHF_FH_JSI12i_1	171.32	157.12			1.1262	1.201	32.995	7	1	Median	0.99184	0.82305	NaN	1	0	Median	0.60372	0.71025	21.049	2	1	Median	1.432	1.4129	15.552	2	0	Median	1.1516	1.2208	2.3091	2	0	Median	1548000000	754470000	793540000	361400000	161530000	199870000	371970000	202890000	169090000	461120000	235370000	225750000	353520000	154680000	198840000	11013	1329	10429	67851;67852;67853;67854;67855;67856;67857	91577;91578;91579;91580;91581;91582;91583;91584;91585;91586;91587;91588	91581			12	
EELQANGSAPAADKEEPAAAGSGAASPSAAEK	2	Unmodified	2981.385	0.38501621	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	36.087	33.81	3;4	2.024E-78	30125	160511_QHF_FH_JSI10i_1	214.92	202.62			1.0968	1.0476	16.366	10	0	Median	1.1395	0.932	3.0732	2	0	Median	0.73532	0.87105	7.3613	2	0	Median	1.0623	1.0513	9.9483	3	0	Plateau	1.1793	1.2757	10.889	3	0	Median	2823900000	1419200000	1404700000	578530000	281980000	296560000	831810000	491890000	339920000	611900000	276640000	335260000	801620000	368680000	432940000	11014	1329	10430	67858;67859;67860;67861;67862;67863;67864;67865;67866;67867	91589;91590;91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602;91603;91604;91605;91606	91599			18	
EELQLLQEQGSYVGEVVR	0	Unmodified	2075.0535	0.053498719	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.889	82.549	2;3	1.0686E-10	73452	160511_QHF_FH_JSI9i_1	127.76	95.258			0.96471	0.93633	13.781	3	2	Median	NaN	NaN	NaN	0	0	Median	0.75535	0.89231	NaN	1	1	Median	0.96471	0.93633	NaN	1	0	Median	1.17	1.1562	NaN	1	1	Median	42609000	20502000	22106000	0	0	0	15544000	11297000	4246500	16374000	4861100	11512000	10691000	4343800	6347400	11015	1984	10431	67868;67869;67870;67871	91607;91608;91609;91610	91610			4	
EELQLSDEQLQK	1	Unmodified	1458.7202	0.72020291	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	46.735	46.008	2	0.00011753	40954	160511_QHF_FH_JSI9i_1	102.53	45.615			1.1208	1.0134	27.642	6	6	Median	0.9583	0.80222	23.235	2	2	Median	0.9383	1.057	38.618	2	2	Median	1.1026	1.0861	NaN	1	1	Median	1.271	1.3001	NaN	1	1	Median	180930000	90530000	90405000	63731000	33570000	30162000	62775000	33804000	28971000	28104000	11570000	16533000	26324000	11586000	14739000	11016	15	10432	67872;67873;67874;67875;67876;67877	91611;91612;91613;91614;91615;91616	91616			6	
EELQSGVDAANSAAQQYQR	0	Unmodified	2063.9508	0.95082456	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				2	2	3	4	47.423	45.054	2;3	3.9698E-304	40607	160511_QHF_FH_JSI11i_1	341.85	311.64			1.0257	1.0736	20.929	10	0	Median	1.2234	1.0037	2.888	2	0	Median	0.95899	1.1118	3.3987	2	0	Median	1.0464	1.012	7.2583	2	0	Median	1.0257	1.0904	31.192	4	0	Median	7357800000	3419800000	3938000000	1584400000	643230000	941200000	2206400000	1061700000	1144700000	1306400000	619770000	686620000	2260500000	1095000000	1165500000	11017	1600	10433	67878;67879;67880;67881;67882;67883;67884;67885;67886;67887;67888	91617;91618;91619;91620;91621;91622;91623;91624;91625;91626;91627;91628;91629;91630;91631;91632;91633;91634;91635	91620			19	
EELQSQVELLNSFEK	1	Unmodified	1791.8891	0.88905915	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	3	1	2	81.224	80.798	2;3	3.0763E-22	73674	160511_QHF_FH_JSI12i_1	182.33	150.48			0.85719	0.89262	13.232	6	0	Median	0.89132	0.74093	NaN	1	0	Median	0.85719	0.98905	2.4447	2	0	Median	0.84366	0.81963	NaN	1	0	Median	0.83906	0.89011	15.739	2	0	Median	202290000	109800000	92490000	23788000	12083000	11704000	68494000	35349000	33145000	42834000	26030000	16803000	67176000	36340000	30837000	11018	1316	10434	67889;67890;67891;67892;67893;67894;67895	91636;91637;91638;91639;91640;91641;91642;91643;91644;91645;91646	91639			11	
EELRELNDR	0	Unmodified	1172.5786	0.57856447	1180;2207	Q03252;P20700	LMNB2;LMNB1	Lamin-B2;Lamin-B1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.19		6	1					4		2	4	2	3	19.803	16.582	2;3	4.2605E-06	14444	160511_QHF_FH_JSI10i_2	137.69	85.958			1.072	1.0563	31.984	10	0	Median	1.2318	1.0517	13.784	2	0	Median	0.86034	1.0701	51.761	3	0	Median	1.1173	1.1249	12.775	2	0	Median	0.93707	1.0426	29.059	3	0	Median	1525300000	722880000	802460000	439050000	185810000	253250000	579880000	285190000	294690000	264830000	113790000	151050000	241580000	138100000	103480000	11019	2207;1180	10435	67896;67897;67898;67899;67900;67901;67902;67903;67904;67905;67906	91647;91648;91649;91650;91651;91652;91653;91654;91655;91656;91657	91656			11	
EELSEEGYLAK	1	Unmodified	1266.598	0.59796251	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	45.43	40.391	2	4.8891E-06	35488	160511_QHF_FH_JSI9i_1	107.21	64.336			0.52594	0.54654	106.98	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25051	0.25651	NaN	1	1	Median	1.1042	1.1645	NaN	1	1	Median	142410000	71203000	71204000	0	0	0	0	0	0	1056800	817170	239680	141350000	70386000	70964000	11020	1273	10436	67907;67908;67909	91658;91659;91660	91660			3	
EELSNVLAAMR	0	Unmodified	1231.6231	0.62307182	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.13	3	4	2				2	3		4	4	4	2	73.864	70.128	2	1.8392E-38	63227	160511_QHF_FH_JSI10i_2	209.6	175.35			0.84037	0.88974	15.533	13	0	Median	1.2646	1.052	21.566	4	0	Median	0.76276	0.92867	16.16	4	0	Median	0.83121	0.83068	8.9003	4	0	Median	0.78763	0.88974	NaN	1	0	Median	4606800000	2354000000	2252800000	961660000	448100000	513560000	1025600000	600040000	425530000	1818500000	866730000	951750000	801100000	439140000	361960000	11021	5604	10437	67910;67911;67912;67913;67914;67915;67916;67917;67918;67919;67920;67921;67922;67923	91661;91662;91663;91664;91665;91666;91667;91668;91669;91670;91671;91672;91673;91674;91675;91676;91677;91678;91679;91680;91681;91682;91683;91684	91682			24	
EELSNVLAAMRK	1	Unmodified	1359.718	0.71803484	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	62.729	62.281	2;3	1.9187E-08	55143	160511_QHF_FH_JSI11i_3	127.17	112.49			1.0771	1.125	38.171	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0069	1.133	NaN	1	0	Median	1.3225	1.2577	16.764	2	0	Median	0.58472	0.58425	NaN	1	1	Median	838010000	443680000	394330000	0	0	0	106570000	52200000	54373000	573250000	293570000	279680000	158190000	97918000	60273000	11022	5604	10438	67924;67925;67926;67927	91685;91686;91687;91688;91689	91685			5	
EELTAFLHPEEFPHMR	0	Unmodified	1981.9356	0.93563219	4020	Q96D15	RCN3	Reticulocalbin-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.667	80.041	4	0.015523	70375	160511_QHF_FH_JSI11i_2	35.711	32.107			0.56513	0.55402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56513	0.55402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11322000	8812200	2509500	0	0	0	0	0	0	11322000	8812200	2509500	0	0	0	11023	4020	10439	67928	91690	91690			1	
EELTLEGIK	1	Unmodified	1030.5546	0.55464113	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.907	52.242	2	0.0012901	47429	160511_QHF_FH_JSI12i_1	78.149	16.47			0.33375	0.33958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33375	0.33958	NaN	1	1	Median	116300000	92110000	24192000	0	0	0	0	0	0	0	0	0	116300000	92110000	24192000	11024	2519	10440	67929	91691	91691			1	
EELTLEGIR	0	Unmodified	1058.5608	0.56078914	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	54.718	52.043	2	4.9308E-07	46264	160511_QHF_FH_JSI9i_1	138.54	67.632			0.96365	1.0104	4.5567	5	0	Median	1.3122	1.0808	NaN	1	0	Median	0.80791	0.95437	NaN	1	0	Median	1.0379	1.0052	NaN	1	0	Median	0.95894	1.0237	1.8462	2	0	Median	2307900000	1127300000	1180600000	467630000	211060000	256570000	547370000	290870000	256510000	650370000	306800000	343580000	642500000	318600000	323900000	11025	1917	10441	67930;67931;67932;67933;67934	91692;91693;91694;91695;91696;91697;91698;91699;91700	91698			9	
EELVAAVEDVRK	1	Unmodified	1356.7249	0.72489436	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.18	3	10					2			3	4	4	4	49.885	47.656	2;3	1.0027E-10	41699	160511_QHF_FH_JSI9i_2	136.02	87.599			0.85636	0.89617	25.236	14	2	Median	0.97427	0.84295	34.111	2	1	Median	0.75375	0.89932	8.9724	4	0	Median	0.87836	0.86802	42.981	4	1	Median	0.89793	0.9697	19.03	4	0	Median	1286400000	703730000	582690000	179960000	80479000	99482000	327300000	192010000	135290000	442170000	219560000	222610000	336990000	211680000	125310000	11026	1421;1272	10442	67935;67936;67937;67938;67939;67940;67941;67942;67943;67944;67945;67946;67947;67948;67949	91701;91702;91703;91704;91705;91706;91707;91708;91709;91710;91711;91712;91713;91714;91715;91716;91717;91718;91719;91720;91721;91722;91723;91724	91712			24	
EELVAEQALK	1	Unmodified	1128.6027	0.60265396	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	43.053	38.744	2	1.3957E-11	34423	160511_QHF_FH_JSI10i_1	153.24	0			1.1744	1.1741	22.866	7	0	Median	1.1744	0.9505	NaN	1	0	Median	0.69738	0.81807	7.506	2	0	Median	1.2774	1.2451	8.3015	2	0	Median	1.2285	1.3097	12.547	2	0	Median	1075300000	532160000	543130000	230430000	115160000	115260000	240670000	130350000	110320000	293690000	140240000	153450000	310510000	146410000	164100000	11027	5722	10443	67950;67951;67952;67953;67954;67955;67956	91725;91726;91727;91728;91729;91730;91731;91732;91733;91734;91735;91736	91731			12	
EELVAQK	1	Unmodified	815.43888	0.43888309	2563	Q14687	GSE1	Genetic suppressor element 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.859	22.344	2	0.037222	19547	160511_QHF_FH_JSI12i_1	50.025	3.1891			0.43596	0.45012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43596	0.45012	NaN	1	1	Median	134860000	76243000	58613000	0	0	0	0	0	0	0	0	0	134860000	76243000	58613000	11028	2563	10444	67957	91737	91737			1	
EELVEESQTK	1	Unmodified	1190.5667	0.56666238	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				2	1	1	1	18.565	17.765	2	6.5015E-06	14816	160511_QHF_FH_JSI9i_1	117.01	86.939			0.99795	0.92306	20.44	2	1	Median	1.3045	1.0666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76344	0.79884	NaN	1	0	Median	249770000	124840000	124930000	129040000	56224000	72819000	0	0	0	0	0	0	120730000	68618000	52110000	11029	2274	10445	67958;67959;67960;67961;67962	91738;91739;91740;91741;91742;91743	91742			6	
EELVPAEETEQDK	1	Unmodified	1515.694	0.69404774	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	33.167	32.617	2	2.9115E-07	29135	160511_QHF_FH_JSI11i_1	97.734	74.508			0.56656	0.60869	33.596	5	5	Median	0.56656	0.47155	NaN	1	1	Median	0.46607	0.52939	20.466	2	2	Median	0.6208	0.60869	NaN	1	1	Median	1.008	1.0579	NaN	1	1	Median	152230000	94318000	57912000	33314000	21608000	11706000	56262000	35503000	20758000	41994000	27365000	14628000	20660000	9841500	10818000	11030	2549	10446	67963;67964;67965;67966;67967;67968	91744;91745;91746;91747;91748;91749	91745			6	
EELVSSDELR	0	Unmodified	1175.567	0.56699673	3538	Q8N573	OXR1	Oxidation resistance protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.553	11.817	3	0.047794	9258	160511_QHF_FH_JSI12i_2	18.745	4.5104			0.61597	0.66549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61597	0.66549	NaN	1	0	Median	42931000	28625000	14306000	0	0	0	0	0	0	0	0	0	42931000	28625000	14306000	11031	3538	10447	67969	91750	91750			1	
EELYMPPLVIK	1	Unmodified	1330.7207	0.7206606	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	87.385	86.837	2	3.4004E-07	79290	160511_QHF_FH_JSI12i_1	133.58	106.28			0.87083	1.0164	17.638	7	0	Median	1.0355	0.88362	21.144	2	0	Median	0.79178	0.94835	9.7964	2	0	Median	1.1594	1.1395	NaN	1	0	Median	0.95087	1.0333	28.367	2	0	Median	470490000	217820000	252670000	96605000	42156000	54450000	130870000	67456000	63409000	137930000	60803000	77123000	105090000	47404000	57688000	11032	5161	10448	67970;67971;67972;67973;67974;67975;67976	91751;91752;91753;91754;91755;91756;91757;91758;91759;91760;91761;91762;91763;91764;91765	91756			15	
EELYQNLTR	0	Unmodified	1164.5775	0.57750184	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.148	37.865	2	0.00038633	34122	160511_QHF_FH_JSI11i_1	85.733	61.578			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11033	2470	10449	67977	91766	91766			1	
EEMDFPQLMK	1	Unmodified	1266.5624	0.5624454	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.754	70.221	2	2.0362E-09	62476	160511_QHF_FH_JSI9i_1	131.06	108.37			0.94116	0.946	1.9941	4	0	Median	1.1729	0.95052	NaN	1	0	Median	0.78252	0.91171	NaN	1	0	Median	0.98391	0.95125	NaN	1	0	Median	0.90026	0.94149	NaN	1	0	Median	1879200000	883720000	995460000	414890000	172430000	242460000	366030000	184270000	181760000	636600000	291310000	345280000	461660000	235710000	225960000	11034	282	10450	67978;67979;67980;67981	91767;91768;91769;91770;91771;91772;91773;91774;91775;91776;91777;91778	91777			12	
EEMDFPQLMK	1	Oxidation (M)	1282.5574	0.55736002	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	57.996	57.338	2	0.0010657	52086	160511_QHF_FH_JSI12i_1	70.256	57.729			0.9826	1.0389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9826	1.0389	NaN	1	0	Median	39146000	19247000	19899000	0	0	0	0	0	0	0	0	0	39146000	19247000	19899000	11035	282	10450	67982	91779	91779		110	1	
EEMGIGGVLGLLWFQK	1	Oxidation (M)	1791.9229	0.92294224	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	97.484	88.861	2;3	1.5265E-09	50563	160513_QHF_FH_JSI9Kac_6	165.78	143.58			1.5985	1.6256	39.079	5	2	Median	1.9003	1.6256	NaN	1	1	Median	0.74015	0.84498	NaN	1	1	Median	1.2847	1.2485	NaN	1	0	Median	1.9047	2.012	26.545	2	0	Median	469310000	183180000	286130000	89141000	33771000	55370000	83994000	45858000	38136000	99284000	28495000	70789000	196890000	75060000	121830000	11036	1798	10451	67983;67984;67985;67986;67987	91780;91781;91782;91783;91784	91781		1474	3	
EEMGIGGVLGLLWFQK	1	Unmodified	1775.928	0.92802762	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.46		4							9	3	3	4	3	100.01	94.074	2;3	2.5656E-88	51248	160513_QHF_FH_JSI11Kac_6	291.66	260.38			0.92675	0.90667	16.143	13	0	Median	1.0683	0.93472	9.28	3	0	Median	0.79019	0.92979	27.333	3	0	Plateau	0.99711	0.95597	5.932	4	0	Median	0.73407	0.8089	8.577	3	0	Median	2468600000	1272400000	1196200000	565700000	255500000	310200000	561280000	328700000	232580000	961310000	470500000	490800000	380300000	217640000	162660000	11037	1798	10451	67988;67989;67990;67991;67992;67993;67994;67995;67996;67997;67998;67999;68000	91785;91786;91787;91788;91789;91790;91791;91792;91793;91794;91795;91796;91797;91798;91799;91800;91801;91802;91803	91788			19	
EEMHLEDSANFIK	1	Unmodified	1561.7083	0.70825802	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	4	3	4	55.615	54.835	2;3	8.4793E-23	48339	160511_QHF_FH_JSI10i_2	181.68	146.46			0.97785	1.0459	11.335	13	2	Median	1.3048	1.102	7.3981	2	0	Median	0.89937	1.078	6.3735	4	0	Median	0.89849	0.90565	3.4441	3	1	Plateau	1.11	1.1743	11.488	4	1	Median	1641700000	802330000	839420000	286470000	128710000	157760000	394560000	207390000	187170000	580610000	304400000	276210000	380120000	161840000	218280000	11038	1103	10452	68001;68002;68003;68004;68005;68006;68007;68008;68009;68010;68011;68012;68013;68014	91804;91805;91806;91807;91808;91809;91810;91811;91812;91813;91814;91815;91816;91817;91818	91818			14	
EEMIHNLQ	0	Unmodified	1012.4648	0.46478027	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.792	28.073	2	4.9894E-05	24486	160511_QHF_FH_JSI9i_1	135.77	115.07			1.152	1.3526	34.261	3	0	Plateau	1.403	1.1593	NaN	1	0	Median	1.152	1.3526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67454	0.70237	NaN	1	0	Median	524990000	267330000	257660000	158360000	73039000	85319000	213660000	106320000	107350000	0	0	0	152970000	87975000	64995000	11039	110	10453	68015;68016;68017	91819;91820;91821;91822	91822			4	
EEMQSNVEVVHTYR	0	Oxidation (M)	1735.7835	0.78354822	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	4	4.47		5					1				1	1	4	29.279	26.938	3	3.285E-05	28292	160511_QHF_FH_JSI12i_2	103.66	99.539			1.0325	1.0817	54.059	6	1	Median	NaN	NaN	NaN	0	0	Median	0.84533	1.0428	NaN	1	0	Median	1.091	1.1136	NaN	1	0	Median	1.0325	1.1078	66.365	4	1	Median	230850000	115620000	115230000	0	0	0	46499000	23823000	22676000	57531000	30925000	26606000	126820000	60869000	65946000	11040	3851	10454	68018;68019;68020;68021;68022;68023	91823;91824;91825;91826;91827;91828;91829	91825		2299	7	
EEMQSNVEVVHTYR	0	Unmodified	1719.7886	0.7886336	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.4	1	8	1				1	3	2	5	5	3	3	37.295	33.139	2;3	3.4057E-22	28453	160511_QHF_FH_JSI11i_2	209.64	174.92			1.2164	1.172	11.166	14	1	Median	1.5045	1.2591	12.252	5	1	Median	0.92115	1.1208	9.3076	3	0	Median	1.0714	1.0999	6.8988	3	0	Median	1.1904	1.3449	13.365	3	0	Median	1788500000	866650000	921820000	453660000	210120000	243540000	446070000	229660000	216410000	564180000	277370000	286810000	324570000	149510000	175060000	11041	3851	10454	68024;68025;68026;68027;68028;68029;68030;68031;68032;68033;68034;68035;68036;68037;68038;68039	91830;91831;91832;91833;91834;91835;91836;91837;91838;91839;91840;91841;91842;91843;91844;91845;91846;91847;91848;91849;91850;91851;91852;91853;91854;91855	91844			26	
EEMRELAALFYSVVVSTVSGNELK	1	Unmodified	2670.3575	0.35746823	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.26	95.535	3	1.6835E-13	56411	160513_QHF_FH_JSI10Kac_6	101.47	85.576			1.2607	1.4595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2607	1.4595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86340000	37010000	49330000	0	0	0	86340000	37010000	49330000	0	0	0	0	0	0	11042	2997	10455	68040	91856	91856			1	
EEMTESKFSK	2	Acetyl (K)	1256.5595	0.55946851	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	40.835	31.928	2	0.002506	17913	160513_QHF_FH_JSI12Kac_3	79.148	23.472			0.94107	1.0259	20.899	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96887	1.0964	NaN	1	0	Median	0.78395	0.74188	NaN	1	0	Median	0.94107	1.0259	NaN	1	0	Median	7267100	3539200	3727900	0	0	0	2281900	1208800	1073100	2485600	1161900	1323700	2499600	1168500	1331000	11043	238	10456	68041;68042;68043	91857;91858;91859;91860	91859	133		4	
EEMTSALATMR	0	Unmodified	1238.5635	0.56350803	1643;2750	P49137;Q16644	MAPKAPK2;MAPKAPK3	MAP kinase-activated protein kinase 2;MAP kinase-activated protein kinase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.917	46.237	2	7.3179E-05	42079	160511_QHF_FH_JSI12i_1	91.658	59.724			1.0323	0.97456	10.417	4	3	Median	1.1525	0.93249	NaN	1	1	Median	0.71314	0.82704	NaN	1	1	Median	1.047	1.0185	NaN	1	1	Median	1.0178	1.0397	NaN	1	0	Median	293690000	159860000	133830000	50072000	24198000	25874000	103150000	65252000	37901000	74633000	37430000	37203000	65830000	32981000	32849000	11044	1643;2750	10457	68044;68045;68046;68047	91861;91862;91863;91864;91865	91863			5	
EEMVLSGKYK	2	Acetyl (K)	1224.606	0.60602478	4595	Q9GZN1	ACTR6	Actin-related protein 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						2	1				1	1	1	53.859	44.068	2	0.015889	23873	160513_QHF_FH_JSI12Kac_3	63.283	43.497			2.8824	3.2883	109.56	3	3	Median	NaN	NaN	NaN	0	0	Median	2.8824	3.2883	NaN	1	1	Median	2.4635	2.3883	NaN	1	1	Median	17.438	18.316	NaN	1	1	Median	3517800	728800	2789000	0	0	0	1666300	402770	1263500	879770	287990	591780	971800	38040	933760	11045	4595	10458	68048;68049;68050	91866;91867;91868	91867	3190		3	
EENAEPVSK	1	Unmodified	1001.4666	0.46655441	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.67	5.19	2				1						1	2		8.376	5.8302	2	0.00013022	5408	160511_QHF_FH_JSI11i_1	91.087	34.04			1.0621	1.0348	49.637	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2869	1.5	NaN	1	1	Median	0.79519	0.76211	43.258	2	1	Median	NaN	NaN	NaN	0	0	Median	462180000	225650000	236530000	0	0	0	196530000	91503000	105020000	265660000	134150000	131510000	0	0	0	11046	5442	10459	68051;68052;68053	91869;91870;91871	91869			3	
EENAEQQALAAK	1	Unmodified	1300.6259	0.62590859	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	21.847	21.234	2	2.3225E-42	18108	160511_QHF_FH_JSI9i_1	209.85	157.13			0.94783	0.99521	30.534	3	2	Median	1.4024	1.1646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6573	0.64579	NaN	1	1	Median	0.94783	0.99521	NaN	1	1	Median	419520000	203580000	215940000	161910000	69466000	92442000	0	0	0	119900000	67842000	52058000	137720000	66275000	71441000	11047	5479	10460	68054;68055;68056	91872;91873;91874;91875	91875			4	
EENFFGPK	1	Unmodified	966.4447	0.44469675	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.25	0.433	3	1								2		1	1	37.18	36.397	2	0.0030848	32580	160511_QHF_FH_JSI11i_1	75.213	44.494			1.1309	1.0736	4.9168	4	0	Median	1.2436	1.0246	7.1053	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0861	1.0698	NaN	1	0	Median	1.0434	1.0774	NaN	1	0	Median	269230000	135590000	133650000	81988000	32304000	49685000	0	0	0	114660000	69102000	45559000	72583000	34179000	38404000	11048	5153	10461	68057;68058;68059;68060	91876;91877;91878;91879	91877			4	
EENGIPMK	1	Unmodified	916.43242	0.43241751	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	20.473	19.648	2	0.0028185	16599	160511_QHF_FH_JSI9i_1	84.498	35.937			1.0654	0.97164	3.4518	2	2	Median	1.1586	0.94821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97967	0.99565	NaN	1	1	Median	172770000	95099000	77669000	90516000	43915000	46601000	0	0	0	0	0	0	82252000	51184000	31068000	11049	4682	10462	68061;68062	91880;91881	91881			2	
EENGTWEK	1	Unmodified	991.42469	0.42468959	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	11.505	11.065	2	0.0008169	8659	160511_QHF_FH_JSI9i_1	91.318	36.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11050	1860	10463	68063;68064;68065;68066	91882;91883;91884;91885	91885			4	
EENGVLVLNDANFDNFVADK	1	Unmodified	2222.0491	0.049141622	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	95.168	94.929	2;3	9.1933E-12	86113	160511_QHF_FH_JSI12i_1	177.88	172.39			0.79954	0.88237	15.026	5	1	Median	0.79954	0.64638	NaN	1	1	Median	0.75894	0.90647	3.812	2	0	Median	0.84711	0.82706	NaN	1	0	Median	0.90087	0.92153	NaN	1	0	Median	293360000	174150000	119210000	26595000	14201000	12394000	155310000	101920000	53391000	53894000	28909000	24985000	57556000	29116000	28439000	11051	1034	10464	68067;68068;68069;68070;68071;68072;68073;68074	91886;91887;91888;91889;91890;91891;91892;91893;91894;91895;91896;91897;91898;91899;91900;91901;91902;91903	91891			18	
EENIEDATEK	1	Unmodified	1176.5146	0.51462681	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.492	17.01	2	6.4897E-19	14088	160511_QHF_FH_JSI9i_1	174.41	115.43			0.89924	0.88881	11.695	4	0	Median	1.0318	0.856	NaN	1	0	Median	0.78373	0.92288	NaN	1	0	Median	1.0728	1.0498	NaN	1	0	Median	0.75484	0.79888	NaN	1	0	Median	440590000	233980000	206600000	119390000	54442000	64947000	89012000	47698000	41314000	127190000	73061000	54133000	104990000	58782000	46211000	11052	2116	10465	68075;68076;68077;68078	91904;91905;91906;91907;91908;91909;91910;91911	91910			8	
EENIQTLLINPNIATVQTSQGLADK	1	Unmodified	2709.4185	0.41848859	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	96.53	96.207	3	6.9604E-07	87295	160511_QHF_FH_JSI12i_1	66.925	53.604			1.2385	1.3026	21.328	3	0	Plateau	1.0838	0.88062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1441	1.0973	NaN	1	0	Median	1.2707	1.349	NaN	1	0	Median	90143000	40231000	49912000	21029000	10547000	10483000	0	0	0	31570000	13648000	17922000	37544000	16037000	21508000	11053	1296	10466	68079;68080;68081	91912;91913;91914	91913			2	
EENLADWYSQVITK	1	Unmodified	1694.8152	0.81516593	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	88.466	88.048	2	7.553E-06	78468	160511_QHF_FH_JSI9i_1	86.467	68.199			0.74573	0.74344	16	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68641	0.66391	NaN	1	1	Median	0.81018	0.83249	NaN	1	1	Median	108760000	52802000	55955000	0	0	0	0	0	0	61204000	27737000	33467000	47553000	25065000	22488000	11054	878	10467	68082;68083;68084	91915;91916;91917	91917			3	
EENLSEDSK	1	Unmodified	1049.4513	0.45129827	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	8.6085	8.3671	2	0.00056418	5864	160511_QHF_FH_JSI9i_1	82.749	57.827			0.63079	0.62661	96.188	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.329	0.3174	NaN	1	1	Median	1.2094	1.237	NaN	1	1	Median	46344000	30083000	16261000	0	0	0	0	0	0	19536000	14788000	4747100	26809000	15295000	11514000	11055	5481	10468	68085;68086;68087;68088	91918;91919;91920;91921	91921			4	
EENMDTSNTSISK	1	Oxidation (M)	1470.6144	0.61441721	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	1	0			By MS/MS	By MS/MS	4.67	5.19	2				1							2	1	11.262	7.5725	2	0.00018298	4188	160513_QHF_FH_JSI11Kac_2	88.441	82.201			1.2361	1.1736	44.04	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2361	1.1736	44.04	2	1	Median	NaN	NaN	NaN	0	0	Median	19994000	5429400	14564000	0	0	0	0	0	0	19994000	5429400	14564000	0	0	0	11056	2831	10469	68089;68090;68091	91922;91923;91924;91925	91923		2154	4	
EENMDTSNTSISK	1	Unmodified	1454.6195	0.61950259	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	18.751	18.256	2	5.0773E-06	15663	160511_QHF_FH_JSI12i_1	125.54	109.34			0.53938	0.8687	33.988	8	8	Linear	1.1508	0.92498	37.933	2	2	Median	0.72542	0.8687	21.447	2	2	Median	0.84436	0.80806	45.289	2	2	Median	0.94715	0.97476	61.179	2	2	Median	409330000	231950000	177390000	82188000	43069000	39119000	120010000	67979000	52030000	103300000	60015000	43287000	103830000	60882000	42951000	11057	2831	10469	68092;68093;68094;68095;68096;68097;68098;68099	91926;91927;91928;91929;91930;91931;91932;91933	91928			8	
EENPESDGEPVVEDGTSVK	1	Unmodified	2015.8807	0.88073889	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.589	36.99	2	2.4193E-10	33541	160511_QHF_FH_JSI12i_1	127.76	109.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4460700	4460700	0	0	0	0	0	0	0	0	0	0	4460700	4460700	0	11058	2414	10470	68100	91934	91934			1	
EENSTEEQALEDQNAK	1	Unmodified	1833.7864	0.78644457	4934	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	3	2	23.833	23.249	2;3	1.723E-40	20488	160511_QHF_FH_JSI12i_1	208.27	189.53			0.9736	0.94837	17.724	7	3	Median	1.0798	0.86759	12.591	2	1	Median	0.95315	1.0633	NaN	1	0	Median	0.9956	0.96115	22.715	2	2	Median	0.96923	1.0141	28.999	2	0	Median	151650000	73335000	78313000	47061000	20891000	26171000	20073000	9615600	10458000	38796000	19099000	19697000	45717000	23730000	21987000	11059	4934	10471	68101;68102;68103;68104;68105;68106;68107;68108	91935;91936;91937;91938;91939;91940;91941;91942;91943;91944;91945	91939			11	
EENTSNESTDVTKGDSK	2	Acetyl (K)	1881.8076	0.80757395	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.499				7	6						5	4	4	22.039	14.79	2;3	1.345E-14	6906	160513_QHF_FH_JSI10Kac_1	135.37	129.27			0.854	0.88275	24.377	11	0	Median	NaN	NaN	NaN	0	0	Median	0.59333	0.68081	20.525	3	0	Plateau	1.16	1.1158	29.999	4	0	Median	0.84038	0.87755	13.89	4	0	Median	61645000	32831000	28814000	0	0	0	21460000	11035000	10426000	11117000	5252100	5865200	29067000	16544000	12523000	11060	2285	10472	68109;68110;68111;68112;68113;68114;68115;68116;68117;68118;68119;68120;68121	91946;91947;91948;91949;91950;91951;91952;91953;91954;91955;91956;91957;91958;91959;91960;91961;91962;91963;91964;91965;91966;91967	91963	2384;2385		22	
EENTSNESTDVTKGDSKNAK	3	2 Acetyl (K)	2236.9931	0.99314289	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	2	1	29.989	21.858	3	0.0048384	9508	160513_QHF_FH_JSI10Kac_1	46.362	23.033			0.78272	0.72947	134.26	5	2	Median	NaN	NaN	NaN	0	0	Median	0.2198	0.25756	182.6	2	1	Median	0.83357	0.7922	11.667	2	0	Median	0.069781	0.074469	NaN	1	1	Median	32052000	22425000	9626800	0	0	0	17297000	12379000	4918800	10335000	5891200	4443700	4419400	4155200	264210	11061	2285	10473	68122;68123;68124;68125;68126	91968;91969;91970;91971;91972;91973	91972	2384;2385;2386		6	
EENTSNESTDVTKGDSKNAKK	4	3 Acetyl (K)	2407.0987	0.09867059	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	2	1	35.693	26.999	3	1.1346E-21	11506	160513_QHF_FH_JSI10Kac_1	139	124.69			0.76156	0.86542	11.233	4	0	Median	NaN	NaN	NaN	0	0	Median	0.73563	0.86542	1.5814	2	0	Median	0.78439	0.77201	NaN	1	0	Median	0.95956	1.0138	NaN	1	0	Median	58738000	32715000	26022000	0	0	0	26661000	15024000	11637000	7027300	3432100	3595200	25049000	14259000	10790000	11062	2285	10474	68127;68128;68129;68130;68131	91974;91975;91976;91977;91978;91979;91980	91980	2384;2385;2386;2387		7	
EENTSNESTDVTKGDSKNAKKK	5	4 Acetyl (K)	2577.2042	0.20419829	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	11.8	0.786				4	3	2					4	2	3	40.326	31.484	3;4	7.8595E-22	13293	160513_QHF_FH_JSI12Kacf_1	131.56	117.69			0.74966	0.8613	15.565	9	0	Median	NaN	NaN	NaN	0	0	Median	0.68775	0.79181	12.085	4	0	Median	0.99659	0.96097	1.3329	2	0	Median	0.94985	0.98393	20.277	3	0	Plateau	208320000	107590000	100730000	0	0	0	77719000	44056000	33664000	35777000	17215000	18563000	94822000	46321000	48502000	11063	2285	10475	68132;68133;68134;68135;68136;68137;68138;68139;68140	91981;91982;91983;91984;91985;91986;91987;91988;91989;91990;91991;91992;91993;91994;91995;91996;91997	91991	2384;2385;2386;2387;2388		17	
EENTSNESTDVTKGDSKNAKKK	5	3 Acetyl (K)	2535.1936	0.19363361	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	4		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	2	1	31.823	23.271	3;4	7.8306E-11	13405	160513_QHF_FH_JSI10Kac_3	99.366	83.641			0.92544	1.0205	71.868	5	1	Median	NaN	NaN	NaN	0	0	Median	0.88649	1.0415	2.8728	2	0	Median	0.96746	0.95293	6.5097	2	0	Median	4.5176	4.944	NaN	1	1	Median	42845000	19468000	23377000	0	0	0	21125000	10733000	10393000	18665000	8374100	10290000	3055500	361340	2694100	11064	2285	10475	68141;68142;68143;68144;68145	91998;91999;92000	92000	2384;2385;2386;2387;2388		3	
EEPAAAGSGAASPSAAEK	1	Unmodified	1599.7376	0.73764389	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.31	9			1	5					3	3	5	4	20.99	17.612	2;3	1.7832E-98	14900	160511_QHF_FH_JSI9i_1	260.97	249.75			1.0055	1.0015	25.913	14	1	Median	1.0377	0.83859	6.1105	2	0	Median	0.71633	0.8521	12.008	3	0	Median	1.1457	1.1121	32.707	5	1	Median	1.0058	1.0751	7.6561	4	0	Median	2893400000	1474200000	1419300000	696960000	318350000	378610000	683930000	377540000	306390000	797240000	440910000	356330000	715300000	337360000	377940000	11065	1329	10476	68146;68147;68148;68149;68150;68151;68152;68153;68154;68155;68156;68157;68158;68159;68160	92001;92002;92003;92004;92005;92006;92007;92008;92009;92010;92011;92012;92013;92014;92015;92016;92017;92018;92019;92020;92021;92022;92023;92024	92017			24	
EEPCLLKR	1	Acetyl (K)	1085.5539	0.55392963	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.083	37.643	2	0.0059872	22253	160513_QHF_FH_JSI11Kac_4	86.953	67.177			0.15873	0.15942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15873	0.15942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4231000	3808700	422350	0	0	0	0	0	0	4231000	3808700	422350	0	0	0	11066	1192	10477	68161	92025	92025	1049		1	
EEPEPGFK	1	Unmodified	931.42871	0.42871234	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	20.815	20.3	2	0.00821	17717	160511_QHF_FH_JSI12i_1	57.177	46.763			0.83974	0.92765	32.329	4	0	Median	1.3047	1.1023	NaN	1	0	Median	0.92194	1.121	NaN	1	0	Median	0.58151	0.56782	NaN	1	0	Median	0.76488	0.78071	NaN	1	0	Median	256520000	157750000	98762000	66156000	32971000	33185000	66373000	42064000	24309000	57795000	41898000	15898000	66190000	40820000	25370000	11067	1609	10478	68162;68163;68164;68165	92026	92026			1	
EEPFFPPPEEFVFIHAVPVEER	0	Unmodified	2640.29	0.2900406	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	101.54	101.44	3	5.4992E-07	89307	160511_QHF_FH_JSI9i_2	77.045	70.014			1.2427	1.3292	14.844	4	1	Median	1.685	1.4308	NaN	1	0	Median	0.84736	1.0207	NaN	1	0	Median	1.2901	1.3317	NaN	1	0	Median	1.197	1.3268	NaN	1	1	Median	1271500000	571080000	700420000	212380000	94966000	117420000	236280000	126570000	109710000	420630000	184340000	236290000	402220000	165210000	237010000	11068	2785	10479	68166;68167;68168;68169	92027;92028	92028			2	
EEPGSDSGTTAVVALIR	0	Unmodified	1700.8581	0.85809337	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.4	4.8	4					1				2	2	1		71.234	69.034	2;3	6.8857E-05	63014	160511_QHF_FH_JSI11i_1	90.861	55.637			0.9442	1.031	8.5105	5	2	Median	1.3609	1.0908	7.9679	2	1	Median	0.89476	1.0303	5.6955	2	0	Median	0.9442	0.91979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	242350000	121520000	120830000	109220000	41827000	67393000	36941000	19308000	17633000	96185000	60383000	35802000	0	0	0	11069	279	10480	68170;68171;68172;68173;68174	92029;92030;92031;92032	92029			4	
EEPIPCTAHWHFGQ	0	Unmodified	1707.7464	0.74637486	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	59.664	58.751	3	0.0028745	51875	160511_QHF_FH_JSI10i_2	41.621	30.516			1.1421	1.0445	24.233	5	1	Median	1.2456	1.0445	NaN	1	0	Median	0.87415	1.0798	37.031	2	1	Median	0.9789	0.98508	NaN	1	0	Median	1.2765	1.4695	NaN	1	0	Median	320380000	148190000	172200000	25124000	12921000	12202000	106370000	55348000	51024000	122550000	55136000	67413000	66340000	24782000	41558000	11070	1090	10481	68175;68176;68177;68178;68179	92033;92034	92033			1	
EEPIPQEPQWSLPSK	1	Unmodified	1763.873	0.87301516	2812	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	69.978	69.337	2	1.5892E-11	63313	160511_QHF_FH_JSI12i_1	107.09	72.396			0.77897	0.74783	8.476	4	3	Median	0.89773	0.73783	13.626	2	2	Median	0.66886	0.77637	NaN	1	0	Median	0.75367	0.72035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108690000	57719000	50972000	49449000	26246000	23203000	38342000	19098000	19244000	20900000	12375000	8524900	0	0	0	11071	2812	10482	68180;68181;68182;68183;68184	92035;92036;92037;92038;92039;92040	92036			6	
EEPLHSIISSTESVQGSTSK	1	Unmodified	2115.0332	0.033157207	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							1	2	3	3	58.118	57.444	2;3	8.5739E-20	49721	160511_QHF_FH_JSI11i_2	167.93	152.29			0.90888	0.95709	18.513	8	3	Median	1.2951	1.1191	NaN	1	1	Median	0.75806	0.89929	26.854	2	0	Median	1.0146	1.0248	23.712	3	2	Median	0.86042	0.89213	0.27817	2	0	Median	1011800000	507260000	504530000	188120000	79028000	109090000	207460000	120260000	87194000	369900000	199890000	170010000	246320000	108080000	138240000	11072	2328	10483	68185;68186;68187;68188;68189;68190;68191;68192;68193	92041;92042;92043;92044;92045;92046;92047;92048;92049;92050;92051;92052;92053;92054;92055;92056	92048			14	
EEPPQPQLANGALK	1	Unmodified	1490.7729	0.77290718	4454	Q9BUV8	C20orf24	Uncharacterized protein C20orf24	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		44.638	44.23	2	0.00043099	39967	160511_QHF_FH_JSI11i_1	73.499	43.726			1.3222	1.3755	20.242	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0584	1.1921	NaN	1	0	Median	1.6518	1.5872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74368000	36562000	37806000	0	0	0	33998000	18187000	15811000	40370000	18375000	21995000	0	0	0	11073	4454	10484	68194;68195	92057;92058;92059	92057			3	
EEPPTTLLWVQYYLAQHYDK	1	Unmodified	2493.2216	0.22162668	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.438	85.087	3	2.6024E-71	47622	160513_QHF_FH_JSI11Kac_6	206.7	178.22			0.73663	0.96541	7.2346	4	0	Linear	1.1238	0.9763	NaN	1	0	Median	0.81602	0.97707	NaN	1	0	Median	1.0157	0.95464	NaN	1	0	Median	0.80507	0.84006	NaN	1	0	Median	1792100000	970020000	822090000	352100000	186510000	165590000	438700000	239730000	198970000	382420000	184210000	198220000	618890000	359570000	259320000	11074	4518	10485	68196;68197;68198;68199	92060;92061;92062;92063;92064;92065	92060			6	
EEPQTVPEAR	0	Unmodified	1154.5568	0.5567664	1113	P17275	JUNB	Transcription factor jun-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.33	16.849	2	0.0010217	14452	160511_QHF_FH_JSI12i_1	68.371	44.415			0.88207	0.95754	20.227	4	0	Median	0.84392	0.69027	NaN	1	0	Median	0.8218	0.97438	NaN	1	0	Median	1.1548	1.1136	NaN	1	0	Median	0.92194	0.94098	NaN	1	0	Median	231430000	114510000	116920000	61625000	32624000	29001000	53194000	28665000	24529000	61500000	24221000	37278000	55109000	29000000	26109000	11075	1113	10486	68200;68201;68202;68203	92066;92067;92068;92069;92070;92071	92068			6	
EEPSNNVK	1	Unmodified	915.42977	0.42977497	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	6.539	2.0638	2	0.0014529	3691	160511_QHF_FH_JSI10i_1	89.296	33.285			0.97417	0.99823	7.3147	10	0	Median	1.0916	0.89893	NaN	1	0	Median	0.92654	1.0728	9.9742	3	0	Median	1.0044	1.0197	3.2621	3	0	Plateau	0.91022	0.9642	6.7047	3	0	Median	3040200000	1577900000	1462300000	787460000	393900000	393560000	732730000	388890000	343840000	716530000	381230000	335300000	803480000	413890000	389590000	11076	2585	10487	68204;68205;68206;68207;68208;68209;68210;68211;68212;68213	92072;92073;92074;92075;92076;92077;92078;92079;92080;92081;92082;92083;92084;92085	92077			14	
EEPSVAPSSTGK	1	Unmodified	1187.567	0.56699673	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	2	3	2	19.449	15.599	2	7.4835E-11	13069	160511_QHF_FH_JSI9i_1	147.74	128.96			0.88015	0.87328	17.527	8	1	Median	1.0439	0.85106	NaN	1	0	Median	0.7224	0.84813	21.031	2	0	Median	0.94728	0.93368	15.346	3	1	Plateau	0.87083	0.91647	33.627	2	0	Median	933710000	456120000	477590000	273760000	120980000	152780000	229240000	122130000	107120000	202660000	93879000	108780000	228050000	119130000	108920000	11077	3500	10488	68214;68215;68216;68217;68218;68219;68220;68221	92086;92087;92088;92089;92090;92091;92092;92093;92094;92095;92096;92097	92096			12	
EEPVTADVINPMALR	0	Unmodified	1653.8396	0.83960654	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	78.246	77.724	2	0.00020349	70427	160511_QHF_FH_JSI10i_1	98.803	64.917			0.74437	0.87427	6.2363	3	0	Plateau	1.1579	0.97874	NaN	1	0	Median	0.74437	0.86649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8924	0.9425	NaN	1	0	Median	108220000	60448000	47768000	30817000	15729000	15088000	41446000	25459000	15987000	0	0	0	35954000	19261000	16693000	11078	318	10489	68222;68223;68224	92098;92099	92099			2	
EEPYFGMGK	1	Unmodified	1056.4586	0.45863226	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.383	42.614	2	0.00061977	38674	160511_QHF_FH_JSI12i_1	77.282	64.294			1.1069	1.2847	54.369	5	1	Median	1.0972	0.90433	100.65	2	1	Median	1.1069	1.2847	NaN	1	0	Median	1.4455	1.4256	NaN	1	0	Median	1.036	1.0593	NaN	1	0	Median	410040000	178530000	231510000	106430000	47257000	59171000	103620000	47803000	55819000	114000000	39984000	74013000	85991000	43482000	42509000	11079	4578	10490	68225;68226;68227;68228;68229	92100;92101;92102;92103	92101			4	
EEQAAAEK	1	Unmodified	874.40323	0.40322587	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	1	4	3	1.7653	1.5076	2	0.00026704	1233	160511_QHF_FH_JSI10i_1	114.89	28.782			2.0098	1.6884	67.929	9	7	Median	2.1529	1.8173	10.406	2	1	Median	0.57452	0.68516	NaN	1	0	Median	1.1229	1.0796	87.256	4	4	Linear	1.7012	1.779	55.946	2	2	Median	288780000	123180000	165590000	13941000	3924300	10017000	76955000	44237000	32718000	143870000	54869000	89003000	54008000	20152000	33856000	11080	917	10491	68230;68231;68232;68233;68234;68235;68236;68237;68238;68239	92104;92105;92106;92107;92108;92109;92110;92111;92112;92113;92114	92111			11	
EEQAAAEKAVTK	2	Acetyl (K)	1315.662	0.66195975	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12	0					2						1	1		27.4	20.01	2	0.0005677	9557	160513_QHF_FH_JSI10Kac_2	89.548	70.768			0.36867	0.39862	25.222	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28082	0.33351	NaN	1	1	Median	0.48398	0.47645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18866000	14372000	4494100	0	0	0	12797000	10263000	2533500	6069800	4109200	1960600	0	0	0	11081	917	10492	68240;68241	92115;92116	92116	675		2	
EEQATTIFQSEQGK	1	Unmodified	1594.7475	0.74748029	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.364	39.061	2	0.00023025	35213	160511_QHF_FH_JSI11i_1	72.29	48.304			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11082	1841	10493	68242	92117	92117			1	
EEQATTIFQSEQGKK	2	Unmodified	1722.8424	0.84244331	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	31.956	31.033	3	0.00010337	26338	160511_QHF_FH_JSI12i_2	72.446	61.391			1.3822	1.5042	41.155	4	1	Median	1.2537	1.0871	NaN	1	0	Median	1.1176	1.3682	NaN	1	0	Median	2.7003	2.8525	NaN	1	1	Median	1.5237	1.6536	NaN	1	0	Median	155550000	69001000	86550000	41735000	22874000	18861000	35007000	16879000	18128000	39275000	10380000	28895000	39534000	18868000	20666000	11083	1841	10494	68243;68244;68245;68246	92118;92119;92120;92121	92119			4	
EEQEETSAIR	0	Unmodified	1190.5415	0.54151026	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		11.615	11.252	2	1.1904E-05	8894	160511_QHF_FH_JSI11i_1	103.26	87.052			0.84675	0.90824	9.6719	4	2	Median	1.1789	0.98191	NaN	1	0	Median	0.70976	0.8287	5.8049	2	2	Median	0.97638	0.95539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	365840000	204340000	161500000	87024000	40239000	46785000	195200000	122030000	73172000	83613000	42074000	41539000	0	0	0	11084	614	10495	68247;68248;68249;68250	92122;92123;92124;92125;92126	92123			5	
EEQELMEEINEDEPVK	1	Unmodified	1959.8619	0.8619177	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	64.569	64.092	2;3	6.142E-52	58061	160511_QHF_FH_JSI10i_1	218.5	207.28			0.88357	0.94956	34.707	6	2	Median	NaN	NaN	NaN	0	0	Median	0.80615	0.92612	0.3788	2	0	Median	1.7154	1.6276	42.394	2	2	Median	0.88357	0.93206	5.7857	2	0	Median	191270000	88851000	102420000	0	0	0	74470000	33031000	41438000	45220000	15316000	29904000	71582000	40504000	31079000	11085	203	10496	68251;68252;68253;68254;68255;68256	92127;92128;92129;92130;92131;92132;92133	92131			7	
EEQFNMLSSDLEK	1	Unmodified	1568.7028	0.70283829	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	65.593	64.895	2	3.6185E-15	58717	160511_QHF_FH_JSI10i_1	156.69	127.73			0.82148	0.79022	11.042	5	2	Median	1.0559	0.86613	12.971	2	2	Median	0.82148	0.96662	NaN	1	0	Median	0.80694	0.77851	NaN	1	0	Median	0.76775	0.78178	NaN	1	0	Median	405100000	220980000	184120000	149990000	75536000	74450000	90089000	50747000	39342000	80138000	44937000	35201000	84889000	49762000	35127000	11086	1360	10497	68257;68258;68259;68260;68261	92134;92135;92136;92137;92138;92139;92140	92138			7	
EEQHQLAVTAYLK	1	Unmodified	1528.7886	0.78855725	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								3	2	3	2	52.32	51.395	2;3	1.5443E-06	45298	160511_QHF_FH_JSI10i_2	127.17	103.19			0.97162	0.9977	12.422	10	2	Median	1.1242	0.97697	8.0971	3	2	Plateau	0.77482	0.941	1.4458	2	0	Median	0.92869	0.95365	21.956	3	0	Plateau	0.94436	1.0302	1.8542	2	0	Median	918270000	442760000	475510000	272610000	126530000	146080000	177980000	103300000	74682000	227580000	108960000	118620000	240110000	103980000	136130000	11087	2502	10498	68262;68263;68264;68265;68266;68267;68268;68269;68270;68271	92141;92142;92143;92144;92145;92146;92147;92148;92149;92150;92151;92152;92153;92154;92155;92156;92157	92157			17	
EEQIKIFQEQQKR	2	2 Acetyl (K)	1786.9214	0.92136233	3487	Q8IZT9	FAM9C	Protein FAM9C	yes	yes	2	0	0	2				By MS/MS	13	0						1							1	35.92	27.416	3	0.019589	15806	160513_QHF_FH_JSI12Kac_3	32.933	6.9673			1.1407	1.2415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1407	1.2415	NaN	1	0	Median	100690000	47405000	53284000	0	0	0	0	0	0	0	0	0	100690000	47405000	53284000	11088	3487	10499	68272	92158	92158	2867;2868		1	
EEQLQQILK	1	Unmodified	1127.6186	0.61863837	1760	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	49.062	48.522	2	0.00013022	43772	160511_QHF_FH_JSI11i_1	105.14	63.706			1.0942	1.0778	5.3789	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1743	1.1196	NaN	1	0	Median	1.0197	1.0376	NaN	1	0	Median	56856000	27260000	29596000	0	0	0	0	0	0	29928000	15826000	14101000	26928000	11434000	15495000	11089	1760	10500	68273;68274	92159	92159			1	
EEQLSSYEDK	1	Unmodified	1226.5303	0.53027687	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	21.389	21.003	2	6.2281E-05	18387	160511_QHF_FH_JSI12i_1	99.815	72.512			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11090	3896	10501	68275;68276	92160;92161	92160			2	
EEQMDGTVTLK	1	Oxidation (M)	1265.5809	0.58093224	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	19.765	19.27	2	0.0026286	16766	160511_QHF_FH_JSI12i_1	61.344	43.48			1.0192	1.1951	24.034	5	1	Median	1.4881	1.1951	NaN	1	0	Median	1.0192	1.1997	NaN	1	0	Median	0.9004	0.87462	NaN	1	0	Median	1.1031	1.1781	39.482	2	1	Median	346560000	159690000	186870000	177840000	75647000	102190000	46699000	23917000	22782000	42803000	25310000	17494000	79222000	34816000	44406000	11091	2734	10502	68277;68278;68279;68280;68281	92162;92163;92164;92165	92163		2111	4	
EEQMDGTVTLK	1	Unmodified	1249.586	0.58601761	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.874	32.534	2	0.00014761	29147	160511_QHF_FH_JSI10i_1	94.363	49.916			0.34274	0.39701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34274	0.39701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	330910000	252330000	78576000	0	0	0	330910000	252330000	78576000	0	0	0	0	0	0	11092	2734	10502	68282	92166	92166			1	
EEQMNTMK	1	Unmodified	1009.4209	0.42086654	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			10.087	9.8514	2	0.010667	7437	160511_QHF_FH_JSI9i_1	54.712	25.814			0.55813	0.66263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55813	0.66263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63328000	34289000	29039000	0	0	0	63328000	34289000	29039000	0	0	0	0	0	0	11093	3328	10503	68283;68284	92167;92168	92168			2	
EEQMSQAQLFTR	0	Unmodified	1466.6824	0.68237762	2937	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.324	44.901	2	0.0014017	40373	160511_QHF_FH_JSI10i_1	65.179	54.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11094	2937	10504	68285	92169	92169			1	
EEQNSSSLLEENK	1	Unmodified	1505.6845	0.68454569	2839	Q4LE39	ARID4B	AT-rich interactive domain-containing protein 4B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.354	25.06	2	0.001512	22061	160511_QHF_FH_JSI10i_1	73.632	50.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11207000	11207000	0	0	0	0	11207000	11207000	0	0	0	0	0	0	0	11095	2839	10505	68286	92170	92170			1	
EEQQDDTVYMGK	1	Unmodified	1441.6031	0.60312424	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	24.378	23.934	2	1.8524E-07	21295	160511_QHF_FH_JSI12i_1	133.42	116.58			0.96115	0.90196	32.942	6	2	Median	0.95227	0.80727	NaN	1	0	Median	0.75332	0.87664	47.735	2	1	Median	0.76482	0.73193	48.864	2	1	Median	0.97012	1.0078	NaN	1	0	Median	289100000	165600000	123500000	64919000	26973000	37947000	88837000	53104000	35733000	81977000	52879000	29098000	53371000	32648000	20723000	11096	2516	10506	68287;68288;68289;68290;68291;68292	92171;92172;92173;92174;92175;92176;92177	92173			7	
EEQQLQGNINELK	1	Unmodified	1541.7686	0.76855009	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	41.536	40.916	2	1.6366E-10	37152	160511_QHF_FH_JSI12i_1	150.46	114.12			0.88005	0.9015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88005	0.9015	NaN	1	0	Median	54642000	31434000	23207000	0	0	0	0	0	0	0	0	0	54642000	31434000	23207000	11097	2627	10507	68293;68294	92178;92179	92178			2	
EEQQQLLQK	1	Unmodified	1142.5932	0.5931519	1159	P19447	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	20.072	19.765	2	0.00091672	17145	160511_QHF_FH_JSI12i_1	71.692	18.603			1.26	1.2825	47.812	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8167	1.7983	NaN	1	1	Median	0.87386	0.91457	NaN	1	0	Median	282310000	110580000	171730000	0	0	0	0	0	0	135330000	42164000	93167000	146980000	68416000	78566000	11098	1159	10508	68295;68296	92180;92181	92181			2	
EEQSENLK	1	Unmodified	975.4509	0.45090434	2929	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.6352	6.524	2	0.013305	4302	160511_QHF_FH_JSI11i_1	51.63	17.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11099	2929	10509	68297	92182	92182			1	
EEQSQITSQVTGQIGWR	0	Unmodified	1945.9494	0.949368	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			64.585	64.232	2	0.00011739	58154	160511_QHF_FH_JSI10i_1	73.927	36.502			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11100	4017	10510	68298	92183	92183			1	
EEQTPQNK	1	Unmodified	972.45124	0.45123869	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.17	16	4	5	2	6	3			1	17	5	6	9	4.1189	1.6766	2	4.5604E-22	1563	160511_QHF_FH_JSI9i_1	194.27	122.04			1.1801	0.99482	39.053	34	3	Median	1.1962	0.99482	41.684	16	2	Median	1.1854	1.3829	17.279	5	0	Median	0.96128	0.9645	27.003	5	0	Median	0.92052	0.95184	44.21	8	1	Median	53523000000	25653000000	27871000000	7113400000	3288500000	3824900000	14554000000	6013700000	8540600000	14093000000	7237200000	6855800000	17763000000	9113300000	8649400000	11101	761	10511	68299;68300;68301;68302;68303;68304;68305;68306;68307;68308;68309;68310;68311;68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323;68324;68325;68326;68327;68328;68329;68330;68331;68332;68333;68334;68335	92184;92185;92186;92187;92188;92189;92190;92191;92192;92193;92194;92195;92196;92197;92198;92199;92200;92201;92202;92203;92204;92205;92206;92207;92208;92209;92210;92211;92212;92213;92214;92215;92216;92217;92218;92219;92220;92221;92222;92223;92224;92225;92226;92227;92228;92229;92230;92231;92232	92210			49	
EEQVIQVWNK	1	Unmodified	1271.651	0.65100113	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	52.137	51.377	2	1.3706E-06	45672	160511_QHF_FH_JSI9i_1	129.42	87.995			1.1315	1.0732	62.3	3	3	Plateau	0.80379	0.65083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37966	0.37365	NaN	1	1	Median	1.2083	1.2958	NaN	1	1	Median	205360000	142380000	62981000	50198000	28900000	21298000	0	0	0	115120000	95154000	19967000	40039000	18322000	21717000	11102	5646	10512	68336;68337;68338;68339;68340	92233;92234;92235;92236;92237	92237			5	
EEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK	1	Unmodified	4376.106	0.10595158	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		1		2	97.266	89.065	4	9.5186E-81	48129	160513_QHF_FH_JSI12Kac_6	233.26	215.47			0.73638	0.87111	7.6345	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.72919	0.86806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9284	0.98596	2.9057	2	2	Median	318490000	208830000	109660000	0	0	0	158020000	118560000	39460000	0	0	0	160470000	90271000	70203000	11103	1991	10513	68341;68342;68343	92238;92239;92240	92238			3	
EESAAKAELALELHK	2	Unmodified	1637.8625	0.86245047	709	O95613	PCNT	Pericentrin	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		76.081	75.448	3	0.01911	66250	160511_QHF_FH_JSI11i_2	37.55	25.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11104	709	10514	68344	92241	92241			1	
EESAASGGAAYTK	1	Unmodified	1240.5572	0.55716033	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	5.57	4		1		3	3				2	3	3	3	12.792	8.6252	2	7.6001E-53	8269	160511_QHF_FH_JSI12i_1	217.14	186.97			0.99879	1.0605	9.4276	11	1	Median	1.3252	1.1149	5.2549	2	1	Median	0.89965	1.062	10.817	3	0	Median	1.0011	0.92878	9.1194	3	0	Median	0.99879	1.0531	9.2467	3	0	Median	2159700000	1187000000	972690000	531260000	229650000	301610000	627340000	393270000	234070000	534790000	332510000	202280000	466280000	231550000	234730000	11105	5542	10515	68345;68346;68347;68348;68349;68350;68351;68352;68353;68354;68355	92242;92243;92244;92245;92246;92247;92248;92249;92250;92251;92252;92253;92254;92255;92256;92257;92258;92259;92260	92247			19	
EESAASGGAAYTKR	1	Acetyl (K)	1438.6688	0.66883604	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	23.712	16.387	2	0.0012091	10112	160513_QHF_FH_JSI12Kac_3	93.258	77.033			0.60791	0.62729	57.95	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43087	0.4164	NaN	1	0	Median	0.8577	0.94499	NaN	1	0	Median	3603300	2054300	1549000	0	0	0	0	0	0	1577800	1077800	499970	2025500	976550	1049000	11106	5542	10516	68356;68357	92261;92262;92263	92262	3476		3	
EESGKPGAHVTVK	2	Unmodified	1337.6939	0.69392858	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.6		12	15					5	4	9	7	9	11	9.5275	7.277	2;3;4	6.6094E-15	5838	160511_QHF_FH_JSI11i_3	162.22	128.96			0.85152	0.86555	40.693	35	6	Median	1.0475	0.88402	18.276	8	0	Median	0.83637	0.9745	22.516	7	0	Median	0.8184	0.79544	15.839	9	0	Median	0.5577	0.62948	63.592	11	6	Median	59596000000	31402000000	28194000000	4583300000	1943700000	2639600000	5563100000	2606100000	2957000000	16810000000	8365900000	8444500000	32639000000	18486000000	14153000000	11107	1212	10517	68358;68359;68360;68361;68362;68363;68364;68365;68366;68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386;68387;68388;68389;68390;68391;68392;68393	92264;92265;92266;92267;92268;92269;92270;92271;92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286;92287;92288;92289;92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303;92304;92305;92306;92307;92308;92309;92310;92311;92312;92313;92314;92315;92316;92317;92318	92268			55	
EESGKPGAHVTVK	2	Acetyl (K)	1379.7045	0.70449327	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	26.867	18.447	3	0.0015767	12076	160513_QHF_FH_JSI11Kac_4	58.32	39.077			0.91228	1.0623	144.66	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.91228	1.0623	NaN	1	0	Median	0.63402	0.6202	NaN	1	0	Median	0.063986	0.069213	NaN	1	1	Median	27032000	18880000	8152000	0	0	0	10774000	5610100	5163900	9378300	6515500	2862800	6879700	6754600	125170	11108	1212	10517	68394;68395;68396	92319;92320;92321	92320	1088		3	
EESGKPGAHVTVKK	3	Unmodified	1465.7889	0.7888916	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	6.9031	6.838	3;4	0.00026017	4666	160511_QHF_FH_JSI11i_3	82.55	69.717			0.82373	0.87036	19.849	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82373	0.93509	NaN	1	0	Median	0.96243	0.91708	7.3946	2	0	Median	0.65418	0.66081	13.357	2	0	Median	737720000	363240000	374480000	0	0	0	163390000	88755000	74634000	309870000	135580000	174280000	264460000	138900000	125560000	11109	1212	10518	68397;68398;68399;68400;68401	92322;92323;92324;92325;92326;92327	92324			6	
EESGVSVSNSQPTNESHSIK	1	Unmodified	2114.9716	0.97161958	4318	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								3	2	1	1	22.881	22.28	2;3	8.3083E-20	19589	160511_QHF_FH_JSI12i_1	167.97	158.28			0.90301	0.95667	9.1148	4	0	Median	1.256	1.0309	NaN	1	0	Median	0.89252	1.0458	NaN	1	0	Median	0.91362	0.88615	NaN	1	0	Median	0.86867	0.88778	NaN	1	0	Median	436230000	206510000	229720000	107500000	45241000	62262000	98673000	49484000	49189000	96754000	47098000	49655000	133300000	64691000	68610000	11110	4318	10519	68402;68403;68404;68405;68406;68407;68408	92328;92329;92330;92331;92332;92333;92334;92335;92336;92337;92338;92339	92332			12	
EESISLMK	1	Unmodified	935.46338	0.46338328	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.177	36.564	2	0.0059057	32913	160511_QHF_FH_JSI10i_1	64.207	36.682			1.2156	1.2223	30.629	4	0	Median	2.5136	2.0933	NaN	1	0	Median	0.88045	1.0374	NaN	1	0	Median	1.238	1.2168	NaN	1	0	Median	1.1936	1.2278	NaN	1	0	Median	404130000	198510000	205630000	87056000	35618000	51438000	96328000	55360000	40968000	118890000	57389000	61501000	101860000	50139000	51720000	11111	5479	10520	68409;68410;68411;68412	92340;92341;92342;92343;92344	92343			5	
EESLQMQVQDILEQNEALK	1	Unmodified	2244.0944	0.094377255	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.76	100.65	3	4.7776E-14	91245	160511_QHF_FH_JSI12i_1	124.63	117.24			0.99331	0.97864	7.8265	4	0	Linear	1.0148	0.82973	NaN	1	0	Median	0.79356	0.9143	NaN	1	0	Median	1.0088	0.96121	NaN	1	0	Median	0.97805	0.99267	NaN	1	0	Median	352140000	184310000	167830000	43132000	21964000	21168000	85817000	49244000	36574000	107460000	48636000	58819000	115740000	64466000	51272000	11112	3328	10521	68413;68414;68415;68416	92345;92346;92347;92348;92349;92350;92351;92352;92353	92349			9	
EESLVEELSPASEK	1	Unmodified	1545.741	0.74099793	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	61.515	61.077	2	1.8384E-07	55482	160511_QHF_FH_JSI12i_1	95.498	71.509			0.80557	0.79321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80557	0.79321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	193860000	92525000	101340000	0	0	0	0	0	0	193860000	92525000	101340000	0	0	0	11113	4519	10522	68417;68418	92354;92355;92356	92356			3	
EESSELEQPFAQDTSSVGPDR	0	Unmodified	2307.0139	0.013878328	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	57.338	56.6	2	2.8929E-85	51251	160511_QHF_FH_JSI11i_1	246.18	220.06			1.2772	1.0846	18.687	3	0	Median	1.2772	1.0846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4424	1.3776	NaN	1	0	Median	0.9046	0.95316	NaN	1	0	Median	105470000	44993000	60475000	27672000	10687000	16985000	0	0	0	39994000	16559000	23435000	37802000	17747000	20055000	11114	2670;2501	10523	68419;68420;68421	92357;92358;92359;92360;92361;92362	92357			6	
EESSELEQPFAQDTSSVGPDRK	1	Unmodified	2435.1088	0.10884135	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.355	49.677	3	2.1514E-29	44894	160511_QHF_FH_JSI11i_1	179.36	149.26			0.89759	0.92902	14.964	4	0	Median	0.94033	0.78004	NaN	1	0	Median	0.85678	0.99493	NaN	1	0	Median	1.1267	1.0958	NaN	1	0	Median	0.81466	0.86748	NaN	1	0	Median	885300000	461550000	423740000	166600000	92800000	73799000	198170000	104310000	93862000	266650000	127780000	138870000	253880000	136660000	117220000	11115	2670;2501	10524	68422;68423;68424;68425	92363;92364;92365;92366;92367;92368;92369;92370;92371;92372;92373;92374	92365			12	
EESSGTPAHQMNLR	0	Unmodified	1555.7049	0.70490397	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.5	1	6	1							1	2	2	3	17.581	17.026	2;3	5.5489E-52	13840	160511_QHF_FH_JSI11i_2	218.18	174.88			0.83682	0.93244	18.422	8	0	Median	0.82901	0.71366	NaN	1	0	Median	0.81559	0.96255	7.7952	2	0	Median	0.92071	0.93057	28.428	2	0	Median	0.80592	0.90014	16.494	3	0	Plateau	769920000	413130000	356790000	107810000	57615000	50196000	144480000	76615000	67863000	245270000	125550000	119720000	272360000	153350000	119010000	11116	3965	10525	68426;68427;68428;68429;68430;68431;68432;68433	92375;92376;92377;92378;92379;92380;92381;92382;92383;92384;92385;92386	92382			12	
EESTAASETTEGSQGDSKNAK	2	Acetyl (K)	2167.9353	0.93529366	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	11.7	0.471				1	2						1		2	19.397	12.19	3	0.0015013	6660	160513_QHF_FH_JSI10Kac_2	49.592	46.044			0.93407	0.97391	11.011	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97322	1.1335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89387	0.94401	4.4102	2	0	Median	12357000	6709300	5647700	0	0	0	2624400	1217800	1406600	0	0	0	9732700	5491500	4241200	11117	3886	10526	68434;68435;68436	92387;92388	92387	2974;2975		2	
EESTAASETTEGSQGDSKNAKK	3	2 Acetyl (K)	2338.0408	0.04082136	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	11.1	0.35				6	1						2	1	4	25.753	18.299	2;3	6.1171E-15	8141	160513_QHF_FH_JSI12Kacf_1	118.13	111.09			0.93715	0.95559	10.561	7	0	Median	NaN	NaN	NaN	0	0	Median	0.87137	0.95055	12.525	2	0	Median	0.97266	0.95559	NaN	1	0	Median	0.88197	0.94931	13.013	4	0	Median	277320000	152690000	124630000	0	0	0	104420000	59594000	44829000	37277000	16988000	20289000	135620000	76105000	59511000	11118	3886	10527	68437;68438;68439;68440;68441;68442;68443	92389;92390;92391;92392;92393;92394;92395;92396;92397;92398	92391	2974;2975;2976		9	
EESTAASETTEGSQGDSKNAKKK	4	3 Acetyl (K)	2508.1463	0.14634906	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	1.28				13	9	5	2	3		3	9	10	10	28.526	19.731	2;3;4	1.5649E-189	9964	160513_QHF_FH_JSI12Kacf_1	288.3	281.65			0.99865	0.99723	92.708	32	1	Median	1.0255	1.1939	35.934	3	0	Plateau	0.76036	0.8543	14.453	9	0	Median	1.0587	1.0208	157.72	10	1	Median	1.0877	0.97633	9.0344	10	0	Linear	4459000000	2221300000	2237700000	856830000	436560000	420270000	1039500000	566200000	473320000	630650000	238930000	391720000	1932000000	979580000	952400000	11119	3886	10528	68444;68445;68446;68447;68448;68449;68450;68451;68452;68453;68454;68455;68456;68457;68458;68459;68460;68461;68462;68463;68464;68465;68466;68467;68468;68469;68470;68471;68472;68473;68474;68475	92399;92400;92401;92402;92403;92404;92405;92406;92407;92408;92409;92410;92411;92412;92413;92414;92415;92416;92417;92418;92419;92420;92421;92422;92423;92424;92425;92426;92427;92428;92429;92430;92431;92432;92433;92434;92435;92436;92437;92438;92439;92440;92441;92442;92443	92421	2974;2975;2976;2977		45	
EESTAASETTEGSQGDSKNAKKK	4	2 Acetyl (K)	2466.1358	0.13578438	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	3		By MS/MS	By MS/MS	By MS/MS	13	0						6					2	2	2	22.353	15.024	3;4	7.2555E-13	9255	160513_QHF_FH_JSI10Kac_3	104.63	89.703			0.92999	0.9926	6.6647	6	0	Median	NaN	NaN	NaN	0	0	Median	0.86189	1.0167	10.207	2	0	Median	0.98881	0.9723	7.042	2	0	Median	0.92634	1.0108	6.6875	2	0	Median	82392000	40822000	41570000	0	0	0	27831000	15150000	12681000	23804000	11415000	12389000	30757000	14256000	16500000	11120	3886	10528	68476;68477;68478;68479;68480;68481	92444;92445;92446;92447;92448;92449;92450;92451	92449	2974;2975;2976;2977		8	
EESTAASETTEGSQGDSKNAKKKNNK	5	4 Acetyl (K)	2906.3377	0.33773166	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	4	0	0	4		By MS/MS		By MS/MS	11.5	0.5				2	2						2		2	34.539	25.935	3	1.94E-08	11147	160513_QHF_FH_JSI10Kac_1	81.312	72.731			0.8882	0.98556	18.71	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98725	1.1408	15.38	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82056	0.87734	11.144	2	0	Median	23564000	11766000	11797000	0	0	0	11322000	5233600	6088400	0	0	0	12242000	6532600	5709000	11121	3886	10529	68482;68483;68484;68485	92452;92453;92454;92455	92454	2974;2975;2976;2977;2978		4	
EESTEVLK	1	Unmodified	933.46549	0.46549177	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	19.084	15.233	2	0.00045611	13064	160511_QHF_FH_JSI10i_1	107.66	60.598			0.93151	1.0026	14.116	8	2	Median	1.192	0.97476	NaN	1	0	Median	0.7565	0.89585	22.95	2	1	Median	0.97404	0.9541	17.985	2	0	Median	0.97326	1.0313	15.427	3	1	Median	2977700000	1591400000	1386300000	694540000	359290000	335250000	831530000	504360000	327160000	676880000	338000000	338880000	774770000	389800000	384970000	11122	1181	10530	68486;68487;68488;68489;68490;68491;68492;68493	92456;92457;92458;92459;92460;92461;92462;92463;92464;92465;92466;92467;92468	92462			13	
EESTPNNASTK	1	Unmodified	1176.5259	0.5258602	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		6.0819	-1.204	2	0.05329	1855	160513_QHF_FH_JSI11Kac_2	36.693	24.468			1.3002	1.2827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3002	1.2827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1017000	503910	513070	0	0	0	0	0	0	1017000	503910	513070	0	0	0	11123	3430	10531	68494	92469	92469			1	
EESTSSGNVSNR	0	Unmodified	1265.5484	0.54838655	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	5.3647	2.7127	2	1.9896E-31	2840	160511_QHF_FH_JSI11i_1	190.57	140.86			0.74735	0.80022	23.364	6	0	Median	1.6092	1.3008	NaN	1	0	Median	0.65675	0.76032	16.276	2	0	Median	0.8427	0.81643	14.781	2	0	Median	0.73413	0.75065	NaN	1	0	Median	294950000	159400000	135550000	49898000	19918000	29980000	83478000	47802000	35676000	92014000	50257000	41757000	69561000	41419000	28141000	11124	1220	10532	68495;68496;68497;68498;68499;68500	92470;92471;92472;92473;92474;92475	92470			6	
EESTSSGNVSNRK	1	Unmodified	1393.6433	0.64334957	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			2	3	3	2	4.8523	3.713	2;3	2.67E-15	2284	160511_QHF_FH_JSI9i_2	160.18	143.34			0.91478	0.87916	24.417	9	1	Median	0.99592	0.82163	9.5706	2	0	Median	1.0626	1.2518	27.921	2	1	Median	0.98039	0.94747	22.828	3	0	Plateau	0.74682	0.79455	10.513	2	0	Median	561170000	265620000	295550000	117670000	42624000	75049000	214850000	102550000	112300000	149590000	77477000	72117000	79049000	42970000	36080000	11125	1220	10533	68501;68502;68503;68504;68505;68506;68507;68508;68509;68510	92476;92477;92478;92479;92480;92481;92482;92483;92484;92485;92486	92484			11	
EETAGSYDSR	0	Unmodified	1113.4574	0.45744628	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		7.9573	7.6115	2	2.505E-09	5162	160511_QHF_FH_JSI9i_1	128.58	118.16			1.1047	1.1579	3.4737	3	1	Plateau	1.3696	1.1252	NaN	1	0	Median	0.98021	1.1609	NaN	1	0	Median	1.1047	1.0831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	495780000	229330000	266460000	139160000	58227000	80934000	217250000	107810000	109440000	139370000	63291000	76079000	0	0	0	11126	432	10534	68511;68512;68513	92487;92488;92489;92490	92490			4	
EETAKLIEK	2	Acetyl (K)	1101.5918	0.59175492	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	40.892	31.985	2	0.00066015	18252	160513_QHF_FH_JSI11Kac_3	96.342	62.089			0.42359	0.41367	49.317	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91763	1.084	NaN	1	0	Median	0.41773	0.41232	NaN	1	0	Median	0.7483	0.79231	NaN	1	0	Median	37217000	22804000	14414000	0	0	0	10181000	4525600	5655300	15336000	11166000	4170000	11701000	7112600	4588300	11127	1033	10535	68514;68515;68516	92491;92492;92493;92494;92495	92491	850		5	
EETDKEEPASK	2	Unmodified	1261.5674	0.56739066	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	3	2	5.4383	3.5567	2;3	2.1893E-12	2700	160511_QHF_FH_JSI9i_1	149.96	117.12			1.0166	1.0202	53.5	9	2	Median	0.8565	0.70072	4.8119	2	0	Median	2.4063	2.8076	2.3164	2	1	Median	0.92998	0.91122	12.982	3	0	Plateau	1.2463	1.3115	35.518	2	1	Median	1772900000	886980000	885920000	497570000	273970000	223600000	215710000	74089000	141620000	535650000	294910000	240740000	523960000	244010000	279960000	11128	840	10536	68517;68518;68519;68520;68521;68522;68523;68524;68525	92496;92497;92498;92499;92500;92501	92501			6	
EETEELK	1	Unmodified	876.40764	0.40764254	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.9114	9.1783	2	0.014083	6635	160511_QHF_FH_JSI9i_1	67.981	5.2636			2.3548	1.8844	NaN	1	1	Median	2.3548	1.8844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	252110000	76917000	175190000	252110000	76917000	175190000	0	0	0	0	0	0	0	0	0	11129	1023	10537	68526	92502	92502			1	
EETFALSSTK	1	Unmodified	1111.5397	0.53971935	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	33.987	33.255	2	2.5599E-05	29832	160511_QHF_FH_JSI10i_1	97.565	64.303			0.99972	0.98241	21.369	5	0	Median	1.168	0.94803	23.387	2	0	Median	0.82049	0.98241	NaN	1	0	Median	1.2114	1.1467	NaN	1	0	Median	0.68782	0.70035	NaN	1	0	Median	306050000	150670000	155390000	109820000	50949000	58875000	77739000	37571000	40168000	62769000	34146000	28623000	55721000	28001000	27720000	11130	5234	10538	68527;68528;68529;68530;68531	92503;92504;92505	92504			3	
EETFTLSTIK	1	Unmodified	1167.6023	0.60231961	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	3	1	3	56.922	54.742	2	7.6886E-08	49458	160511_QHF_FH_JSI11i_1	143.7	121.57			1.0805	1.1155	7.6705	7	0	Median	1.2217	1.026	11.832	2	0	Median	0.97451	1.1348	7.2067	3	0	Median	1.0805	1.0293	NaN	1	0	Median	1.0833	1.1371	NaN	1	0	Median	1449100000	688780000	760360000	374800000	151560000	223230000	435850000	233750000	202100000	321730000	166660000	155070000	316760000	136810000	179950000	11131	5708	10539	68532;68533;68534;68535;68536;68537;68538;68539;68540	92506;92507;92508;92509;92510;92511;92512;92513;92514;92515;92516;92517;92518;92519	92507			14	
EETFTPMPSPYYMELTK	1	Unmodified	2062.9268	0.92676657	5492	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	88.404	87.986	2	6.3605E-05	80087	160511_QHF_FH_JSI12i_1	79.82	66.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11132	5492	10540	68541;68542	92520;92521	92521			2	
EETGQVLER	0	Unmodified	1059.5197	0.51965261	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	16.101	15.817	2	0.010286	13266	160511_QHF_FH_JSI11i_1	59.426	32.824			0.60119	0.61164	21.618	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54081	0.52494	NaN	1	1	Median	0.66831	0.71266	NaN	1	1	Median	232710000	145790000	86928000	0	0	0	0	0	0	124700000	77483000	47214000	108020000	68302000	39714000	11133	1554	10541	68543;68544	92522;92523	92522			2	
EETIPPDYR	0	Unmodified	1118.5244	0.52440364	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.041	28.768	2	0.012359	25047	160511_QHF_FH_JSI9i_1	47.657	32.016			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11134	1181	10542	68545	92524	92524			1	
EETIPPDYRLEEVK	1	Unmodified	1716.857	0.85703074	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	50.648	50.017	2;3	0.00048082	44499	160511_QHF_FH_JSI9i_1	76.759	56.663			1.0467	1.0633	5.9596	6	3	Median	1.2461	1.0031	NaN	1	1	Median	0.89935	1.0633	3.721	2	1	Median	1.1489	1.1088	NaN	1	0	Median	1.0467	1.0708	10.547	2	1	Median	572830000	283310000	289520000	60564000	31124000	29440000	179800000	92412000	87385000	147790000	71987000	75802000	184680000	87788000	96889000	11135	1181	10543	68546;68547;68548;68549;68550;68551;68552	92525;92526;92527;92528;92529;92530	92530			6	
EETLVIPSTGIK	1	Unmodified	1285.7129	0.71293269	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	60.823	60.179	2	2.4988E-08	53387	160511_QHF_FH_JSI9i_1	140.3	118.21			1.023	1.0739	15.861	5	2	Median	1.0716	0.88667	NaN	1	0	Median	0.98146	1.1373	NaN	1	0	Median	1.0904	1.0782	NaN	1	0	Median	0.87867	0.91635	22.434	2	2	Median	456920000	251900000	205030000	76135000	38226000	37909000	115570000	69286000	46284000	112710000	66203000	46512000	152500000	78180000	74322000	11136	4085	10544	68553;68554;68555;68556;68557	92531;92532;92533;92534;92535;92536;92537;92538	92537			8	
EETNEIQVVNEEPQR	0	Unmodified	1812.849	0.84898525	3592	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.89	37.674	2	2.1392E-07	33322	160511_QHF_FH_JSI9i_1	89.959	75.995			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11137	3592	10545	68558	92539	92539			1	
EETPGAGQK	1	Unmodified	915.42977	0.42977497	3590	Q8NBI5	SLC43A3	Solute carrier family 43 member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	5.65	4	1			3	3				1	3	4	3	5.7446	1.6601	2	4.3197E-07	2101	160513_QHF_FH_JSI11Kac_3	135.84	60.532			0.80189	0.90408	14.441	11	0	Median	1.2161	0.99378	NaN	1	0	Median	0.72439	0.84159	7.9866	3	0	Median	1.073	1.03	14.044	4	0	Median	0.77619	0.82507	1.3173	3	0	Median	4322900000	2156400000	2166600000	843000000	358460000	484540000	1077200000	571210000	506000000	1287400000	626790000	660570000	1115400000	599920000	515450000	11138	3590	10546	68559;68560;68561;68562;68563;68564;68565;68566;68567;68568;68569	92540;92541;92542;92543;92544;92545;92546;92547;92548;92549;92550;92551;92552;92553;92554;92555;92556;92557	92546			18	
EETPGQRPAVTETHQLAELNEK	1	Unmodified	2476.2194	0.21939485	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	4	2	40.36	39.789	3;4	3.4072E-17	34925	160511_QHF_FH_JSI10i_2	141.1	114.95			1.0083	0.9869	7.1633	9	0	Median	1.1634	0.98561	5.7788	2	0	Median	0.86995	1.0839	6.0821	2	0	Median	1.0312	0.96988	7.9572	4	0	Median	0.94595	0.95176	NaN	1	0	Median	1116900000	560310000	556570000	207450000	89573000	117880000	376510000	189690000	186820000	480770000	253030000	227740000	52149000	28021000	24129000	11139	5474	10547	68570;68571;68572;68573;68574;68575;68576;68577;68578;68579	92558;92559;92560;92561;92562;92563;92564;92565;92566;92567;92568;92569;92570;92571;92572;92573;92574;92575;92576	92572			19	
EETQPPVALK	1	Unmodified	1110.5921	0.59208927	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	2	3	2	36.436	31.687	2	6.7773E-08	27551	160511_QHF_FH_JSI9i_1	123.98	115.07			0.86376	0.92949	12.77	8	0	Median	0.87946	0.71843	NaN	1	0	Median	0.82076	0.96775	2.4213	2	0	Median	1.1271	1.0884	15.219	3	0	Plateau	0.84754	0.89576	3.0842	2	0	Median	2028600000	1027900000	1000800000	443790000	204640000	239150000	551970000	301350000	250620000	525480000	242510000	282980000	507400000	279390000	228010000	11140	3609	10548	68580;68581;68582;68583;68584;68585;68586;68587	92577;92578;92579;92580;92581;92582;92583;92584;92585;92586;92587;92588;92589;92590;92591	92588			15	
EETQPPVALKK	2	Unmodified	1238.6871	0.68705229	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								3	3	4	2	23.961	23.291	2;3	8.9615E-06	19356	160511_QHF_FH_JSI11i_2	108.98	92.775			1.1163	1.2319	25.71	12	5	Median	1.773	1.476	16.92	3	2	Plateau	1.0344	1.2987	9.0596	3	1	Median	0.97832	0.97498	34.666	4	2	Median	1.1068	1.2021	17.215	2	0	Median	677210000	321870000	355340000	70287000	25047000	45241000	147160000	68340000	78816000	291270000	138790000	152480000	168490000	89690000	78799000	11141	3609	10549	68588;68589;68590;68591;68592;68593;68594;68595;68596;68597;68598;68599	92592;92593;92594;92595;92596;92597;92598;92599;92600;92601;92602;92603;92604;92605	92601			13	
EETVLATVQALQTASHLSQQADLR	0	Unmodified	2608.3457	0.34565799	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	3	1	3	98.252	98.084	3;4	1.2144E-125	84576	160511_QHF_FH_JSI12i_2	277.25	269.44			1.0609	1.0732	17.142	7	1	Median	1.1901	1.0137	NaN	1	0	Median	0.94361	1.1705	19.683	2	1	Median	1.1173	1.1373	NaN	1	0	Median	0.96344	1.0732	24.671	3	0	Median	736260000	368420000	367830000	157410000	69704000	87701000	127730000	74742000	52990000	230150000	117720000	112440000	220960000	106260000	114700000	11142	817	10550	68600;68601;68602;68603;68604;68605;68606;68607	92606;92607;92608;92609;92610;92611;92612;92613;92614;92615;92616;92617;92618;92619;92620	92607			15	
EETVVENATPDYAAGLVSTQK	1	Unmodified	2221.075	0.075022022	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									2		1	3	66.797	66.124	2;3	6.9707E-44	58844	160511_QHF_FH_JSI9i_1	166.9	144.33			0.92532	0.8142	31.394	4	3	Median	0.85886	0.698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99694	0.94974	NaN	1	0	Median	0.923	0.95249	47.291	2	2	Median	139930000	66742000	73188000	35286000	15019000	20267000	0	0	0	39377000	16752000	22625000	65267000	34971000	30296000	11143	4699	10551	68608;68609;68610;68611;68612;68613	92621;92622;92623;92624;92625;92626;92627	92627			7	
EEVAQNVVSMSK	1	Unmodified	1319.6391	0.63911582	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	38.15	37.662	2	4.7742E-08	33618	160511_QHF_FH_JSI10i_1	139.32	119.02			0.39897	0.44246	43.043	2	1	Median	NaN	NaN	NaN	0	0	Median	0.27645	0.32635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5758	0.59986	NaN	1	1	Median	269060000	196810000	72247000	0	0	0	143590000	108190000	35400000	0	0	0	125470000	88619000	36847000	11144	2383	10552	68614;68615	92628;92629	92629			2	
EEVGEEAIVELVENGK	1	Unmodified	1742.8574	0.85742467	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									2	3	4	3	92.091	91.731	2;3	4.6008E-52	83308	160511_QHF_FH_JSI10i_1	274.8	230.6			0.85691	0.93904	34.239	9	2	Median	1.5552	1.2762	4.9926	2	1	Median	0.81909	0.9534	52.204	3	1	Median	0.96584	0.93727	0.26647	2	0	Median	0.84722	0.86343	1.6922	2	0	Median	582710000	310780000	271930000	61042000	25202000	35840000	191180000	104950000	86235000	163940000	87011000	76929000	166540000	93618000	72927000	11145	1436	10553	68616;68617;68618;68619;68620;68621;68622;68623;68624;68625;68626;68627	92630;92631;92632;92633;92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644;92645;92646;92647;92648;92649;92650	92646			21	
EEVGEEAIVELVENGKK	2	Unmodified	1870.9524	0.95238769	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							2	2	3	3	81.839	81.213	2;3	9.9119E-17	71300	160511_QHF_FH_JSI11i_2	167.05	155.79			0.93715	0.96167	16.501	10	2	Median	1.2297	1.041	21.57	2	1	Median	0.84898	1.0197	15.196	2	0	Median	0.9103	0.93741	12.324	3	1	Plateau	0.9273	0.98656	22.541	3	0	Median	1261900000	641840000	620060000	155470000	76517000	78952000	274690000	142080000	132610000	465600000	229380000	236230000	366130000	193860000	172270000	11146	1436	10554	68628;68629;68630;68631;68632;68633;68634;68635;68636;68637	92651;92652;92653;92654;92655;92656;92657;92658;92659;92660;92661;92662;92663;92664;92665;92666;92667	92660			17	
EEVGQYLK	1	Unmodified	964.48656	0.48656157	3045	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	30.577	29.984	2	0.0027493	27039	160511_QHF_FH_JSI12i_1	85.212	38.786			1.0493	0.91715	23.412	5	1	Median	1.099	0.90132	NaN	1	0	Median	1.0493	1.2279	NaN	1	0	Median	1.0829	1.0523	NaN	1	0	Median	0.73608	0.77359	24.073	2	1	Median	901160000	439960000	461200000	106970000	47277000	59691000	160570000	82213000	78357000	168430000	78733000	89700000	465190000	231740000	233450000	11147	3045	10555	68638;68639;68640;68641;68642	92668;92669;92670;92671;92672	92670			5	
EEVLQDPVLK	1	Unmodified	1168.634	0.63395408	4168	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	51.305	50.545	2	8.0587E-05	45867	160511_QHF_FH_JSI12i_1	101.9	90.049			0.45283	0.53763	44.169	3	2	Plateau	0.92686	0.75307	NaN	1	1	Median	0.45283	0.53763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.221	1.2906	NaN	1	1	Median	163690000	92030000	71658000	55214000	28822000	26392000	59414000	39267000	20147000	0	0	0	49060000	23941000	25119000	11148	4168	10556	68643;68644;68645	92673;92674;92675;92676	92673			4	
EEVMAATQAEGPK	1	Unmodified	1359.634	0.63403044	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	26.359	25.695	2	2.553E-12	22623	160511_QHF_FH_JSI10i_1	120.96	80.915			0.80895	0.78624	70.192	4	4	Median	1.1567	0.92582	NaN	1	1	Median	0.56573	0.66771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67893	0.70028	118.8	2	2	Median	101500000	63384000	38113000	24781000	12620000	12161000	37660000	28059000	9601300	0	0	0	39056000	22705000	16351000	11149	3989	10557	68646;68647;68648;68649;68650;68651;68652	92677;92678;92679;92680;92681;92682;92683	92682			7	
EEVNEWFTK	1	Unmodified	1180.5401	0.5400537	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.405	52.741	2	4.2746E-07	47619	160511_QHF_FH_JSI11i_1	138.98	109.83			1.1104	1.0762	19.677	4	0	Median	1.0723	0.86716	NaN	1	0	Median	1.1819	1.3892	NaN	1	0	Median	1.1499	1.1299	NaN	1	0	Median	0.96137	1.025	NaN	1	0	Median	385240000	170030000	215210000	60910000	26043000	34867000	96611000	39252000	57359000	119690000	58294000	61396000	108030000	46445000	61586000	11150	5365	10558	68653;68654;68655;68656	92684;92685;92686;92687;92688;92689;92690;92691	92684			8	
EEVPEFTK	1	Unmodified	977.47058	0.47057715	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	34.801	33.888	2	0.0096523	30644	160511_QHF_FH_JSI12i_1	64.207	38.47			1.4837	1.3572	53.994	2	2	Median	1.1425	0.92649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9268	1.9882	NaN	1	1	Median	103320000	44601000	58715000	51647000	31153000	20493000	0	0	0	0	0	0	51669000	13448000	38221000	11151	1100	10559	68657;68658	92692;92693	92692			2	
EEVPTALVEAHVR	0	Unmodified	1448.7623	0.7623425	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.319	50.34	3	7.7708E-05	43458	160511_QHF_FH_JSI11i_2	71.933	64.094			1.5406	1.4309	14.775	4	0	Median	1.5411	1.3057	NaN	1	0	Median	1.0539	1.2901	NaN	1	0	Median	1.5663	1.5681	NaN	1	0	Median	1.54	1.7492	NaN	1	0	Median	223710000	100790000	122930000	40860000	15634000	25226000	44374000	24741000	19633000	73524000	33871000	39654000	64955000	26543000	38413000	11152	3685	10560	68659;68660;68661;68662	92694;92695;92696	92695			1	
EEVQAGVAAANTK	1	Unmodified	1286.6466	0.64664404	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.145	19.654	2	0.00023425	17094	160511_QHF_FH_JSI12i_1	78.324	55.584			1.0489	1.064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0489	1.064	NaN	1	0	Median	18189000	8338200	9851200	0	0	0	0	0	0	0	0	0	18189000	8338200	9851200	11153	3340	10561	68663	92697	92697			1	
EEVQLTSK	1	Unmodified	932.48148	0.48147619	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	24.457	17.09	2	0.029874	10409	160513_QHF_FH_JSI12Kac_3	49.418	21.2			0.98313	1.0033	9.8071	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96501	0.9361	NaN	1	0	Median	1.0016	1.0754	NaN	1	0	Median	11292000	6000700	5291400	0	0	0	0	0	0	6768500	3581900	3186600	4523600	2418900	2104800	11154	3860	10562	68664;68665	92698;92699;92700	92699			3	
EEVSGSSAAVTENADSDRISDEANSNFNQGTENEQSK	1	Unmodified	3915.6751	0.67506281	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	47.537	46.878	3	0.0064033	42601	160511_QHF_FH_JSI12i_1	31.6	30.072			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11222000	11222000	0	0	0	0	0	0	0	0	0	0	11222000	11222000	0	11155	1305	10563	68666	92701	92701			1	
EEVSIEVLK	1	Unmodified	1044.5703	0.5702912	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	54.645	54.114	2	0.0008633	49262	160511_QHF_FH_JSI12i_1	77.732	32.014			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11156	1895	10564	68667;68668	92702;92703	92702			2	
EEVSRLEEQMNGLK	1	Unmodified	1660.809	0.80903469	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	50.671	49.709	2	0.0026926	42892	160511_QHF_FH_JSI11i_2	75.819	53.827			1.099	1.159	10.406	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0342	1.0768	NaN	1	0	Median	1.168	1.2475	NaN	1	0	Median	60943000	27335000	33609000	0	0	0	0	0	0	36690000	17301000	19388000	24254000	10033000	14221000	11157	1016	10565	68669;68670	92704	92704			1	
EEVTELLAR	0	Unmodified	1058.5608	0.56078914	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		52.573	51.773	2	0.00020763	46756	160511_QHF_FH_JSI11i_1	101.72	56.386			1.2888	1.163	2.9172	2	1	Median	1.3744	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2085	1.1873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	404380000	185560000	218820000	160530000	69929000	90605000	0	0	0	243840000	115630000	128210000	0	0	0	11158	1157	10566	68671;68672	92705;92706	92705			2	
EEVVLLTHGDSVDK	1	Unmodified	1539.7781	0.77805214	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.81	5	4					4			1	5	2	5	45.391	42.897	2;3	1.028E-21	39143	160511_QHF_FH_JSI12i_1	179.35	156.03			0.83688	0.92798	12.534	11	0	Median	1.0153	0.84892	NaN	1	0	Median	0.77455	0.92077	6.3582	4	0	Median	0.96022	0.93753	24.644	2	0	Median	1.0101	1.0847	10.538	4	0	Median	1061200000	577460000	483770000	64184000	28990000	35194000	440110000	258150000	181960000	141070000	80639000	60429000	415870000	209670000	206190000	11159	1693	10567	68673;68674;68675;68676;68677;68678;68679;68680;68681;68682;68683;68684;68685	92707;92708;92709;92710;92711;92712;92713;92714;92715;92716;92717;92718;92719;92720;92721;92722;92723;92724;92725;92726	92710			17	
EEVVLWMNTVGPYHNR	0	Unmodified	1942.936	0.93596654	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	75.662	71.958	3	1.9289E-12	36255	160513_QHF_FH_JSI12Kac_6	132.44	128.47			0.84647	0.89175	13.425	6	1	Median	1.405	1.1574	NaN	1	0	Median	0.70996	0.8757	NaN	1	1	Median	0.95714	0.92909	18.854	2	0	Median	0.81111	0.89175	2.1009	2	0	Median	243550000	128120000	115440000	26050000	10348000	15702000	46812000	29060000	17751000	93254000	46556000	46697000	77438000	42153000	35285000	11160	4874	10568	68686;68687;68688;68689;68690;68691	92727;92728;92729;92730;92731;92732	92731			5	
EEVVLWMNTVGPYHNR	0	Oxidation (M)	1958.9309	0.93088116	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	70.22	60.453	3	0.0004098	31681	160513_QHF_FH_JSI12Kac_6	63.128	59.026			1.0641	1.1521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.1521	NaN	1	0	Median	8595100	4869800	3725400	0	0	0	0	0	0	0	0	0	8595100	4869800	3725400	11161	4874	10568	68692	92733	92733		2546	1	
EEYAVLISEAQAIK	1	Unmodified	1562.8192	0.81918867	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	78.802	78.39	2;3	1.4284E-09	71105	160511_QHF_FH_JSI10i_1	142.1	127.94			0.98347	0.94854	41.924	5	3	Median	1.1613	0.94854	NaN	1	0	Median	1.0278	1.168	2.8178	2	1	Median	0.68113	0.64889	NaN	1	1	Median	0.4341	0.4441	NaN	1	1	Median	141500000	74982000	66522000	21846000	11076000	10770000	62977000	26164000	36813000	30301000	18275000	12026000	26381000	19467000	6914000	11162	2517	10569	68693;68694;68695;68696;68697	92734;92735;92736;92737;92738;92739	92736			6	
EEYEGPNK	1	Unmodified	964.41379	0.41379055	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	9.4345	7.6782	2	0.0066274	6345	160511_QHF_FH_JSI11i_1	61.999	44.151			1.342	1.5699	39.701	5	2	Median	2.3636	1.9421	NaN	1	0	Median	1.342	1.5699	NaN	1	1	Median	1.7777	1.7153	67.225	2	0	Median	1.0621	1.1135	NaN	1	1	Median	433050000	183710000	249350000	122470000	41461000	81006000	92208000	49001000	43207000	108720000	37211000	71508000	109660000	56033000	53624000	11163	1222	10570	68698;68699;68700;68701;68702	92740;92741;92742;92743;92744	92740			5	
EEYGFLPVPLR	0	Unmodified	1318.6921	0.69213767	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.41	2	5						1		1	3	2	2	86.684	84.662	2	2.2063E-09	76086	160511_QHF_FH_JSI9i_2	130.75	97.485			0.89011	1.0439	34.578	7	3	Median	1.0674	0.89116	NaN	1	0	Median	0.86373	1.074	4.0196	2	2	Median	1.0265	1.01	22.57	2	0	Median	0.69829	0.75384	72.095	2	1	Median	454160000	222400000	231770000	62866000	28253000	34613000	136860000	75496000	61360000	108550000	43416000	65138000	145890000	75231000	70655000	11164	3593	10571	68703;68704;68705;68706;68707;68708;68709;68710	92745;92746;92747;92748;92749;92750;92751;92752;92753;92754;92755;92756	92751			12	
EEYLLLR	0	Unmodified	934.51238	0.51238239	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.008	53.49	2	0.048731	46190	160511_QHF_FH_JSI11i_2	47.916	21.314			1.6418	1.6626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6418	1.6626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176660000	70977000	105680000	0	0	0	0	0	0	176660000	70977000	105680000	0	0	0	11165	1600	10572	68711	92757	92757			1	
EEYNGVIEEFLATGEK	1	Unmodified	1826.8574	0.85742467	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.494	8	11								4	6	5	4	94.572	94.249	2;3	6.0968E-10	85828	160511_QHF_FH_JSI12i_1	186.49	154.64			0.80595	0.84928	19.403	19	13	Median	0.94757	0.80233	17.041	4	2	Median	0.6174	0.75776	12.57	6	5	Median	0.90804	0.88116	11.847	5	3	Median	0.81904	0.87582	35.999	4	3	Median	1022700000	594160000	428550000	110370000	59632000	50741000	418800000	263200000	155600000	270370000	140410000	129960000	223160000	130920000	92246000	11166	4715	10573	68712;68713;68714;68715;68716;68717;68718;68719;68720;68721;68722;68723;68724;68725;68726;68727;68728;68729;68730	92758;92759;92760;92761;92762;92763;92764;92765;92766;92767;92768;92769;92770;92771;92772;92773;92774;92775;92776;92777;92778;92779;92780;92781;92782;92783;92784;92785;92786;92787;92788;92789;92790;92791;92792;92793;92794	92770			37	
EEYQLVQVEQK	1	Unmodified	1391.6933	0.69325988	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.54	8				1	3				2	4	3	3	46.829	43.281	2	2.9917E-07	23753	160513_QHF_FH_JSI11Kac_3	109.42	86.679			0.74824	0.8082	36.532	12	9	Median	0.84352	0.69153	16.418	2	2	Median	0.67135	0.75673	43.513	4	2	Median	0.89249	0.8737	46.912	3	3	Median	0.78531	0.84101	34.918	3	2	Median	2116500000	1112200000	1004300000	405390000	179290000	226100000	550670000	324720000	225950000	555410000	283190000	272220000	605020000	324980000	280050000	11167	4940	10574	68731;68732;68733;68734;68735;68736;68737;68738;68739;68740;68741;68742	92795;92796;92797;92798;92799;92800;92801;92802;92803;92804;92805;92806	92799			12	
EEYQSLIR	0	Unmodified	1036.5189	0.51892433	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	36.451	35.646	2	0.0037867	31934	160511_QHF_FH_JSI11i_1	70.69	26.243			1.0565	0.87044	23.907	6	1	Linear	1.0171	0.85613	32.978	2	0	Median	0.88109	1.0318	NaN	1	0	Median	0.88643	0.84897	NaN	1	0	Median	0.65911	0.7227	29.837	2	1	Median	682220000	360290000	321930000	253080000	119480000	133600000	135660000	70319000	65344000	156100000	82690000	73409000	137370000	87801000	49569000	11168	5583	10575	68743;68744;68745;68746;68747;68748	92807;92808;92809;92810;92811	92808			5	
EFADFEYRK	1	Unmodified	1203.556	0.55603811	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	1	5	4	39.982	39.538	2;3	0.00023623	33449	160511_QHF_FH_JSI12i_3	80.688	73.323			1.1327	1.1274	69.092	11	7	Median	0.96859	0.82016	NaN	1	0	Median	0.69722	0.85079	NaN	1	0	Median	1.1521	1.1946	68.677	5	4	Median	1.5202	1.6197	90.933	4	3	Median	988390000	436980000	551420000	61029000	29108000	31920000	115060000	50131000	64925000	402620000	177230000	225390000	409690000	180510000	229180000	11169	3625	10576	68749;68750;68751;68752;68753;68754;68755;68756;68757;68758;68759	92812;92813;92814;92815;92816;92817;92818;92819;92820;92821;92822	92821			11	
EFADSLGIPFLETSAK	1	Unmodified	1723.8669	0.86686715	2020;4642	Q9H0U4;Q92928;P62820	RAB1B;RAB1C;RAB1A	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.599	7	8	1							3	4	4	5	101.2	101.1	2;3	1.1852E-159	86871	160511_QHF_FH_JSI12i_2	306.55	263.24			0.98112	1.0139	11.502	16	2	Median	1.1851	1.0014	14.851	3	0	Median	0.75167	0.88185	13.189	4	1	Median	1.0343	1.014	7.5534	4	1	Median	0.9435	1.0421	12.188	5	0	Median	8363100000	4458200000	3904900000	1239000000	550740000	688270000	2332600000	1360100000	972480000	2343400000	1244100000	1099300000	2448100000	1303300000	1144800000	11170	4642;2020	10577	68760;68761;68762;68763;68764;68765;68766;68767;68768;68769;68770;68771;68772;68773;68774;68775	92823;92824;92825;92826;92827;92828;92829;92830;92831;92832;92833;92834;92835;92836;92837;92838;92839;92840;92841;92842;92843;92844;92845	92827			23	
EFAGEDTSDLFLEER	0	Unmodified	1756.7792	0.77917435	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.779	73.278	2	6.279E-30	65220	160511_QHF_FH_JSI9i_1	191.53	159.93			0.85674	0.86865	7.6591	4	0	Median	1.1726	0.97296	NaN	1	0	Median	0.71481	0.83744	NaN	1	0	Median	0.85967	0.82283	NaN	1	0	Median	0.85382	0.90102	NaN	1	0	Median	1213400000	667770000	545660000	201440000	94287000	107150000	359930000	227490000	132440000	328420000	179450000	148970000	323640000	166550000	157100000	11171	231	10578	68776;68777;68778;68779	92846;92847;92848;92849;92850;92851;92852	92852			7	
EFAGEDTSDLFLEEREIALR	0	Unmodified	2339.1281	0.12812022	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	87.3	87.168	3	0.0054948	75727	160511_QHF_FH_JSI12i_3	43.598	35.208			1.2514	1.2614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2514	1.2614	NaN	1	1	Median	56172000	25354000	30818000	0	0	0	0	0	0	0	0	0	56172000	25354000	30818000	11172	231	10579	68780	92853	92853			1	
EFALKHLPNDPMFK	2	Acetyl (K)	1727.8705	0.87051274	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	80.519	71.141	3	3.0758E-05	39025	160513_QHF_FH_JSI11Kac_6	95.236	79.098			1.4824	1.4737	238	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28856	0.27386	NaN	1	0	Median	7.6157	7.9302	NaN	1	1	Median	431340000	262790000	168550000	0	0	0	0	0	0	318960000	248990000	69971000	112370000	13796000	98579000	11173	517	10580	68781;68782	92854;92855	92854	264		2	
EFALSNLK	1	Unmodified	920.49673	0.49673232	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	52.503	51.717	2	0.0016392	44176	160511_QHF_FH_JSI12i_2	86.794	54.323			0.9177	1.0282	9.2802	6	0	Linear	0.97424	0.82474	NaN	1	0	Median	0.73946	0.87743	13.472	2	0	Median	0.96081	0.95513	4.3998	2	0	Median	0.88836	0.98301	NaN	1	0	Median	506300000	269960000	236340000	92121000	43931000	48190000	118470000	68653000	49813000	193380000	106450000	86926000	102330000	50925000	51406000	11174	4449	10581	68783;68784;68785;68786;68787;68788	92856;92857;92858;92859;92860;92861;92862;92863;92864;92865	92857			10	
EFALSNLKAGAK	2	Acetyl (K)	1289.698	0.69795133	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.009	64.313	2	0.019529	34300	160513_QHF_FH_JSI11Kac_5	72.321	30.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11175	4449	10582	68789	92866	92866	3164		1	
EFANFTFPR	0	Unmodified	1127.54	0.53999412	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	68.898	68.122	2	0.00074526	58915	160511_QHF_FH_JSI12i_3	74.92	68.025			0.95259	1.0522	16.992	5	1	Median	1.3825	1.2197	NaN	1	0	Median	0.8597	1.0522	NaN	1	1	Median	0.95259	0.9416	NaN	1	0	Median	1.0847	1.1322	27.808	2	0	Median	204810000	91313000	113500000	27656000	10597000	17059000	45169000	16064000	29106000	47656000	21888000	25768000	84330000	42763000	41567000	11176	4164	10583	68790;68791;68792;68793;68794	92867;92868;92869;92870;92871	92871			5	
EFAPSDEELDSYR	0	Unmodified	1556.6631	0.66308196	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.214	51.542	2	0.0001102	46437	160511_QHF_FH_JSI10i_1	90.913	86.663			0.85909	0.89422	16.874	4	2	Median	1.212	1.0061	NaN	1	0	Median	0.80826	0.93851	NaN	1	0	Median	0.91312	0.85202	NaN	1	1	Median	0.65532	0.68302	NaN	1	1	Median	245880000	141960000	103920000	57257000	25817000	31441000	70339000	42728000	27610000	69838000	43994000	25844000	48450000	29426000	19023000	11177	518	10584	68795;68796;68797;68798	92872;92873;92874;92875;92876;92877;92878	92876			7	
EFAQIIK	1	Unmodified	847.48035	0.48035398	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.34		4	1				2			1	3	2	1	47.321	43.106	2	0.0055967	36948	160511_QHF_FH_JSI12i_2	94.262	23.349			0.91175	0.99704	19.26	6	0	Median	1.4314	1.217	NaN	1	0	Median	0.74004	0.88164	17.493	2	0	Median	0.87611	0.88701	16.439	2	0	Median	1.0593	1.193	NaN	1	0	Median	3120200000	1582900000	1537300000	517380000	236280000	281110000	717290000	363910000	353380000	1049700000	572490000	477220000	835760000	410210000	425560000	11178	887	10585	68799;68800;68801;68802;68803;68804;68805	92879;92880;92881	92879			3	
EFAQIIKIGR	1	Acetyl (K)	1215.6976	0.69755739	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.5	0.5								1	1		1	1		77.054	67.176	2	1.4615E-05	36679	160513_QHF_FH_JSI11Kac_6	106.2	90.866			0.41257	0.43272	214.99	2	1	Median	NaN	NaN	NaN	0	0	Median	1.6806	1.9788	NaN	1	1	Median	0.10128	0.094624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55324000	49897000	5426100	0	0	0	1711000	666770	1044300	53613000	49231000	4381900	0	0	0	11179	887	10586	68806;68807	92882;92883	92882	623		2	
EFATLIIDILSEAK	1	Unmodified	1561.8603	0.86032521	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	103.36	103.37	2	2.0511E-30	90114	160511_QHF_FH_JSI12i_3	195.25	166.45			1.0733	1.0565	12.121	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0278	0.96968	NaN	1	0	Median	1.1209	1.151	NaN	1	0	Median	86541000	37719000	48822000	0	0	0	0	0	0	22286000	7892900	14393000	64255000	29826000	34429000	11180	5545	10587	68808;68809;68810	92884;92885;92886;92887	92887			4	
EFDAILINPK	1	Unmodified	1158.6285	0.62847478	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.645	7	4	1							3	3	3	3	70.21	69.459	2;3	7.0787E-10	63041	160511_QHF_FH_JSI10i_1	138.1	125.47			0.81389	0.77375	30.032	10	3	Median	0.84154	0.68736	14.728	3	1	Median	0.65246	0.76435	35.557	3	2	Plateau	0.95811	0.94428	0.65217	2	0	Median	0.97282	1.0435	24.062	2	0	Median	1427000000	748040000	678950000	285940000	155820000	130120000	370180000	224570000	145610000	416290000	196710000	219580000	354570000	170940000	183630000	11181	5536	10588	68811;68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822	92888;92889;92890;92891;92892;92893;92894;92895;92896;92897;92898;92899;92900;92901;92902;92903;92904;92905;92906;92907;92908;92909;92910;92911	92900			24	
EFDEDSEDRLVNEK	1	Unmodified	1723.7537	0.75368788	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	38.741	38.12	2;3	0.0001056	34197	160511_QHF_FH_JSI10i_1	84.759	72.614			1.0769	1.1089	18.121	8	3	Median	1.4132	1.1456	28.477	2	1	Median	1.041	1.2098	10.06	2	0	Median	1.0756	1.029	22.288	2	1	Median	0.91303	0.96909	16.8	2	1	Median	1374900000	674580000	700320000	134010000	53867000	80140000	438650000	211650000	226990000	473000000	221680000	251320000	329250000	187390000	141870000	11182	5298	10589	68823;68824;68825;68826;68827;68828;68829;68830	92912;92913;92914;92915;92916;92917;92918;92919;92920;92921;92922;92923	92918			12	
EFDELNPSAQR	0	Unmodified	1304.5997	0.59969384	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.107	39.477	2	2.1465E-30	35617	160511_QHF_FH_JSI11i_1	196.07	182.69			1.0469	1.1217	19.643	4	0	Median	0.98827	0.81845	NaN	1	0	Median	1.0526	1.2473	NaN	1	0	Median	1.0412	1.0255	NaN	1	0	Median	1.1514	1.2269	NaN	1	0	Median	1342100000	686550000	655520000	190890000	94717000	96169000	409250000	228890000	180360000	399440000	189800000	209640000	342490000	173140000	169350000	11183	1103	10590	68831;68832;68833;68834	92924;92925;92926;92927;92928;92929	92924			6	
EFDGKSLVSVTK	2	Unmodified	1308.6925	0.6925316	898;2870	P08238;Q58FF7;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	1				By MS/MS	3	0			1										1	46.876	46.635	3	0.045708	39822	160511_QHF_FH_JSI12i_3	32.734	22.124			0.88052	0.9147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88052	0.9147	NaN	1	1	Median	40094000	23885000	16209000	0	0	0	0	0	0	0	0	0	40094000	23885000	16209000	11184	898;2870	10591	68835	92930	92930			1	
EFDKHFGK	2	Acetyl (K)	1048.4978	0.49779495	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.6	0.481								4	7	1	3	4	3	42.681	33.147	2;3	0.0014897	18916	160513_QHF_FH_JSI11Kac_5	76.827	60.945			0.57401	0.6022	81.549	11	1	Median	0.83389	0.72016	NaN	1	0	Median	1.0428	1.2476	9.471	3	0	Median	0.32157	0.314	11.346	4	0	Median	0.57401	0.6022	112.95	3	1	Median	289410000	209190000	80217000	12800000	7785700	5014800	45939000	20183000	25756000	203390000	161990000	41401000	27277000	19232000	8045100	11185	2094	10592	68836;68837;68838;68839;68840;68841;68842;68843;68844;68845;68846	92931;92932;92933;92934;92935;92936;92937;92938;92939	92935	2187		8	
EFDMILGK	1	Unmodified	951.47355	0.47355404	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	66.005	65.273	2	0.0098416	59457	160511_QHF_FH_JSI11i_1	55.676	29.939			0.83927	0.85602	74.547	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.20231	0.22936	NaN	1	1	Median	0.85954	0.85602	NaN	1	0	Median	0.72978	0.81159	NaN	1	0	Median	185130000	110500000	74625000	0	0	0	31075000	26144000	4931400	80474000	41063000	39411000	73578000	43295000	30283000	11186	3503	10593	68847;68848;68849;68850	92940;92941;92942;92943	92940			4	
EFDPTITDASLSLPSR	0	Unmodified	1747.8628	0.8628444	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	79.659	79.012	2	1.0585E-05	70283	160511_QHF_FH_JSI9i_1	120.84	103.92			0.56257	0.5194	38.854	4	2	Median	0.70657	0.58329	52.543	2	1	Median	NaN	NaN	NaN	0	0	Median	0.39455	0.38292	NaN	1	0	Median	0.65639	0.67063	NaN	1	1	Median	112090000	70273000	41819000	57856000	34278000	23578000	0	0	0	28461000	18622000	9839400	25775000	17373000	8402200	11187	2233	10594	68851;68852;68853;68854	92944;92945;92946;92947	92946			4	
EFDPTITDASLSLPSRR	0	Unmodified	1903.964	0.96395543	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							2	2		1	70.029	69.046	3	7.0342E-07	57720	160511_QHF_FH_JSI10i_3	117.37	100.09			1.001	1.0141	4.4426	5	0	Median	1.1791	0.99452	3.0635	2	0	Median	0.83	0.97227	7.5413	2	0	Median	NaN	NaN	NaN	0	0	Median	1.001	1.0141	NaN	1	0	Median	498180000	246660000	251520000	215120000	97556000	117560000	248340000	132260000	116080000	0	0	0	34725000	16844000	17880000	11188	2233	10595	68855;68856;68857;68858;68859	92948;92949;92950;92951;92952;92953;92954;92955	92949			8	
EFDQLTPEESQAR	0	Unmodified	1548.7056	0.70561548	4020	Q96D15	RCN3	Reticulocalbin-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	41.504	40.993	2	5.7848E-06	37238	160511_QHF_FH_JSI12i_1	126.71	101.47			0.76105	0.83785	14.725	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65095	0.755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88978	0.92979	NaN	1	1	Median	81308000	51747000	29561000	0	0	0	39224000	27016000	12208000	0	0	0	42084000	24731000	17353000	11189	4020	10596	68860;68861	92956;92957;92958	92957			3	
EFDQNVK	1	Unmodified	878.4134	0.41339662	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		14.936	14.363	2	0.014353	11592	160511_QHF_FH_JSI9i_1	66.993	41.167			1.3666	1.2056	38.861	2	2	Median	1.1317	0.91593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6503	1.5869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2466700000	1634300000	832320000	1340100000	910090000	430010000	0	0	0	1126600000	724250000	402310000	0	0	0	11190	5296	10597	68862;68863	92959;92960	92960			2	
EFDSSTLNESVR	0	Unmodified	1382.6314	0.6313879	4041	Q96EC8	YIPF6	Protein YIPF6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			42.739	42.328	2	0.0026359	38051	160511_QHF_FH_JSI10i_1	69.65	49.51			0.76525	0.8957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76525	0.8957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36056000	19274000	16782000	0	0	0	36056000	19274000	16782000	0	0	0	0	0	0	11191	4041	10598	68864	92961	92961			1	
EFEAVLTER	0	Unmodified	1092.5451	0.54513908	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	30.122	29.341	2	0.012948	25961	160511_QHF_FH_JSI11i_1	47.067	13.27			0.93556	0.98597	15.525	4	0	Median	1.6095	1.337	NaN	1	0	Median	0.83748	0.99686	NaN	1	0	Median	0.98853	0.971	NaN	1	0	Median	0.88542	0.9752	NaN	1	0	Median	5152400000	2532000000	2620400000	1630100000	538610000	1091500000	1817300000	960520000	856780000	1629600000	984900000	644730000	75423000	47994000	27429000	11192	3990	10599	68865;68866;68867;68868	92962;92963;92964;92965	92962			4	
EFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFK	1	Unmodified	4420.2096	0.20961202	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			107.48	101.76	4;5	5.9213E-09	60280	160513_QHF_FH_JSI10Kac_6	72.878	68.881			0.92041	1.0897	9.1515	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92041	1.0897	9.1515	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120310000	86194000	34115000	0	0	0	120310000	86194000	34115000	0	0	0	0	0	0	11193	1520	10600	68869;68870	92966;92967	92966			2	
EFEDDLVK	1	Unmodified	993.46549	0.46549177	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	42.238	41.588	2	0.031057	36783	160511_QHF_FH_JSI9i_1	41.448	24.063			1.0617	0.96316	12.102	4	0	Median	1.1244	0.90569	NaN	1	0	Median	0.73917	0.85823	NaN	1	0	Median	1.1891	1.1224	NaN	1	0	Median	1.0026	1.0243	NaN	1	0	Median	249470000	128390000	121080000	40719000	22551000	18167000	70467000	40912000	29555000	71839000	30894000	40945000	66445000	34036000	32409000	11194	301	10601	68871;68872;68873;68874	92968;92969	92969			2	
EFEDPRDAPPPTR	0	Unmodified	1525.7161	0.71612058	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	29.907	29.151	3	0.0044384	24600	160511_QHF_FH_JSI11i_2	48.112	36.135			1.0034	1.0332	20.584	8	2	Median	1.1477	0.97333	7.1846	2	1	Median	0.77778	0.9195	29.403	2	1	Median	1.2839	1.2739	21.789	2	0	Median	0.881	0.94247	14.249	2	0	Median	1260600000	623910000	636740000	266850000	114220000	152630000	316070000	176110000	139960000	408260000	181510000	226750000	269460000	152070000	117390000	11195	910	10602	68875;68876;68877;68878;68879;68880;68881;68882	92970;92971;92972;92973;92974;92975	92974			6	
EFEFLMR	0	Unmodified	970.45824	0.45823833	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.304	70.418	2	0.037155	60607	160511_QHF_FH_JSI12i_2	48.787	36.58			0.75296	0.75193	11.461	4	0	Median	0.81777	0.72454	NaN	1	0	Median	0.63566	0.78035	NaN	1	0	Median	0.69329	0.703	NaN	1	0	Median	0.82132	0.90866	NaN	1	0	Median	71207000	38021000	33186000	16065000	7457100	8608100	14549000	8882400	5666800	19632000	11405000	8227600	20960000	10277000	10683000	11196	2134	10603	68883;68884;68885;68886	92976	92976			1	
EFEFSQLPLK	1	Unmodified	1236.639	0.63903946	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	7	3							3		1	1	3	1	80.905	75.479	2	1.5658E-07	38030	160513_QHF_FH_JSI11Kac_5	116.52	106.57			0.95996	0.97487	14.721	6	3	Median	1.446	1.1993	NaN	1	0	Median	0.84866	0.9934	NaN	1	1	Median	0.9719	0.95668	13.468	3	2	Median	0.78202	0.82302	NaN	1	0	Median	289600000	146920000	142680000	2687200	1269100	1418100	97094000	53441000	43653000	130310000	57693000	72619000	59509000	34514000	24995000	11197	5669	10604	68887;68888;68889;68890;68891;68892	92977;92978;92979;92980;92981;92982	92982			6	
EFEGLLAQMR	0	Unmodified	1192.591	0.59104341	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	72.163	71.597	2	0.0011751	62100	160511_QHF_FH_JSI12i_3	78.149	69.617			0.70561	0.6621	21.629	2	2	Median	0.66128	0.5682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75291	0.77152	NaN	1	1	Median	80468000	43409000	37059000	30005000	18146000	11859000	0	0	0	0	0	0	50462000	25263000	25200000	11198	5463	10605	68893;68894	92983;92984	92984			2	
EFELSKLQQR	1	Acetyl (K)	1318.6881	0.68811492	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	70.922	60.268	2	0.0046507	30008	160513_QHF_FH_JSI12Kac_5	76.465	57.685			0.409	0.43668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.409	0.43668	NaN	1	1	Median	1945700	1288300	657380	0	0	0	0	0	0	0	0	0	1945700	1288300	657380	11199	1459	10606	68895	92985	92985	1441		1	
EFEPLLNWMK	1	Oxidation (M)	1321.6377	0.63765925	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	3.8		5	4					1		3	3	2	2	81.918	80.102	2	7.2953E-05	72021	160511_QHF_FH_JSI10i_2	93.267	79.548			0.86896	0.88276	16.639	9	0	Median	1.0836	0.92205	20.266	3	0	Median	0.58282	0.70037	11.073	2	0	Median	0.97049	0.92956	12.077	2	0	Median	0.86811	0.92824	7.1055	2	0	Median	495200000	262850000	232350000	82365000	46632000	35733000	118220000	71742000	46476000	143510000	69521000	73987000	151110000	74956000	76151000	11200	1057	10607	68896;68897;68898;68899;68900;68901;68902;68903;68904;68905	92986;92987;92988;92989;92990;92991;92992;92993;92994;92995;92996;92997;92998;92999;93000;93001;93002;93003	93000		686	18	
EFEPLLNWMK	1	Unmodified	1305.6427	0.64274463	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	98.332	98.186	2	4.0236E-26	87101	160511_QHF_FH_JSI10i_2	195.27	161.47			0.9857	0.99683	11.095	11	0	Median	1.0253	0.85256	3.4099	2	0	Median	0.82197	0.99683	3.7621	3	0	Plateau	0.95288	0.96809	6.6364	3	0	Plateau	0.93093	1.0173	11.613	3	0	Plateau	5648400000	2785500000	2862900000	1048900000	498700000	550180000	1319900000	723700000	596220000	1842600000	880910000	961700000	1437000000	682220000	754800000	11201	1057	10607	68906;68907;68908;68909;68910;68911;68912;68913;68914;68915;68916	93004;93005;93006;93007;93008;93009;93010;93011;93012;93013;93014;93015;93016;93017;93018;93019;93020;93021;93022;93023;93024;93025;93026;93027;93028;93029;93030;93031;93032;93033;93034;93035;93036	93032			33	
EFEPLLNWMKDK	2	Acetyl (K)	1590.7752	0.77521537	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		91.916	82.555	2	1.2713E-09	46396	160513_QHF_FH_JSI11Kac_6	149.94	115.22			0.083106	0.080244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.083106	0.080244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	103800000	96897000	6903300	0	0	0	0	0	0	103800000	96897000	6903300	0	0	0	11202	1057	10608	68917	93037	93037	888		1	
EFESVLVDAFSHVAR	0	Unmodified	1704.8471	0.84713476	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	2	3	95.842	94.182	3	1.5586E-40	84085	160511_QHF_FH_JSI12i_3	171.26	163.13			1.0987	1.021	15.98	6	1	Median	1.2773	1.129	NaN	1	0	Median	0.74868	0.90752	NaN	1	0	Median	1.0987	1.0533	18.638	2	0	Median	0.999	1.0582	25.829	2	1	Median	423630000	199340000	224290000	30962000	13060000	17903000	42112000	23981000	18131000	145490000	81351000	64136000	205070000	80948000	124120000	11203	4921	10609	68918;68919;68920;68921;68922;68923;68924	93038;93039;93040;93041;93042;93043;93044;93045;93046;93047	93046			10	
EFETLIK	1	Unmodified	878.47493	0.47493425	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.304	48.908	2	0.059099	41888	160511_QHF_FH_JSI12i_2	46.016	27.285			0.23503	0.26322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23503	0.26322	NaN	1	1	Median	117730000	95249000	22485000	0	0	0	0	0	0	0	0	0	117730000	95249000	22485000	11204	594	10610	68925	93048	93048			1	
EFEVYGPIK	1	Unmodified	1080.5492	0.54916182	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.68	4	1					2	5		2	4	2	4	63.453	56.394	2	4.4117E-06	50964	160511_QHF_FH_JSI10i_1	119.41	105.25			0.89422	0.97607	23.141	11	2	Median	0.93618	0.77166	5.3363	2	0	Median	0.84256	1.0016	28.995	4	2	Median	1.0201	0.99787	2.5626	2	0	Median	0.83891	0.89991	24.885	3	0	Median	1182600000	605530000	577060000	188360000	84097000	104260000	354540000	218490000	136040000	344240000	160940000	183300000	295460000	142010000	153460000	11205	910	10611	68926;68927;68928;68929;68930;68931;68932;68933;68934;68935;68936;68937	93049;93050;93051;93052;93053;93054;93055;93056;93057;93058;93059;93060;93061;93062;93063;93064;93065;93066;93067;93068;93069;93070	93061			22	
EFEVYGPIKR	1	Acetyl (K)	1278.6608	0.66083754	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		70.303	59.566	2	0.001936	31941	160513_QHF_FH_JSI11Kac_5	93.551	71.403			0.64352	0.69902	124.84	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4249	1.6899	NaN	1	0	Median	0.29063	0.28914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24721000	18119000	6602500	0	0	0	3930500	1576700	2353800	20791000	16542000	4248700	0	0	0	11206	910	10612	68938;68939	93071;93072;93073;93074	93072	664		4	
EFFLAHIYTELQLIEEALQK	1	Unmodified	2434.2784	0.27841328	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.34	95.623	3	1.2044E-57	56457	160513_QHF_FH_JSI10Kac_6	198.77	171.81			0.6714	0.80662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6714	0.80662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143380000	85601000	57783000	0	0	0	143380000	85601000	57783000	0	0	0	0	0	0	11207	5350	10613	68940	93075	93075			1	
EFFLLIMR	0	Unmodified	1067.5838	0.58377319	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.789	83.461	2	4.1518E-16	44622	160513_QHF_FH_JSI12Kac_6	164.89	147.51			1.0217	1.0085	11.234	4	0	Median	1.2727	1.0705	NaN	1	0	Median	0.82621	0.9502	NaN	1	0	Median	1.2418	1.1397	NaN	1	0	Median	0.84056	0.88938	NaN	1	0	Median	229640000	113470000	116170000	59566000	28030000	31536000	82592000	43320000	39272000	56048000	24528000	31520000	31430000	17587000	13842000	11208	2884	10614	68941;68942;68943;68944	93076;93077;93078;93079;93080;93081;93082	93079			7	
EFFLPPK	1	Unmodified	876.47454	0.47454032	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				57.859	56.86	2	0.020219	49951	160511_QHF_FH_JSI9i_2	52.683	20.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11209	5161	10615	68945	93083	93083			1	
EFFMSFGNVVELR	0	Unmodified	1573.7599	0.75989966	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.493	82.133	2	0.00049018	46109	160513_QHF_FH_JSI11Kac_6	91.03	62.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11210	5433	10616	68946	93084	93084			1	
EFFNGKEPSR	1	Unmodified	1209.5778	0.57783619	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		23.472	22.498	2;3	0.0031738	18130	160511_QHF_FH_JSI9i_3	72.643	63.055			0.90051	0.88297	21.156	4	1	Median	1.1837	0.97466	7.1737	2	0	Median	0.73105	0.84153	NaN	1	0	Median	0.67627	0.62765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	160120000	82632000	77488000	57357000	23872000	33484000	51751000	29277000	22473000	51012000	29482000	21530000	0	0	0	11211	982	10617	68947;68948;68949;68950	93085;93086;93087;93088	93088			4	
EFFNGKEPSR	1	Acetyl (K)	1251.5884	0.58840088	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	47.168	36.867	2	0.00162	20954	160513_QHF_FH_JSI10Kac_4	84.17	45.877			0.33995	0.33144	106.96	4	1	Median	NaN	NaN	NaN	0	0	Median	0.98757	1.1562	NaN	1	0	Median	0.33995	0.33144	16.69	2	0	Median	0.079613	0.085185	NaN	1	1	Median	27320000	20015000	7305300	0	0	0	6481900	3752900	2729000	18304000	14116000	4188000	2534400	2146000	388340	11212	982	10617	68951;68952;68953;68954;68955	93089;93090;93091;93092;93093;93094	93091	763		6	
EFFPNHQWVK	1	Unmodified	1330.6459	0.64585618	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	50.663	50.545	2;3	0.00041291	43261	160511_QHF_FH_JSI12i_3	75.509	45.573			1.4546	1.4278	8.9344	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6133	1.5209	NaN	1	1	Median	1.3116	1.3404	NaN	1	1	Median	128170000	55008000	73161000	0	0	0	0	0	0	59795000	20595000	39200000	68374000	34413000	33961000	11213	1133	10618	68956;68957;68958;68959;68960	93095;93096;93097;93098;93099	93099			5	
EFFSTIVVDAIDVLK	1	Unmodified	1694.9131	0.91308906	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching		By MS/MS		5.5	6.06		3							1	1		3		103.12	103.03	2;3	9.0403E-30	90817	160511_QHF_FH_JSI11i_2	188.91	175.77			0.74065	0.73709	1.7995	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74065	0.73709	1.7995	2	1	Median	NaN	NaN	NaN	0	0	Median	117300000	66427000	50874000	15726000	7520700	8205000	0	0	0	101570000	58906000	42669000	0	0	0	11214	2094	10619	68961;68962;68963;68964	93100;93101;93102;93103	93101			4	
EFFVGLSK	1	Unmodified	925.49092	0.49091866	603;739	O94760;O95865	DDAH1;DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1;N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.47		4	2					2	2	3	2	3	2	64.877	60.545	2	0.0010799	52178	160511_QHF_FH_JSI12i_3	94.302	58.422			1.0348	0.96039	17.808	10	4	Median	1.0336	0.88598	19.194	3	1	Plateau	0.77456	0.94238	23.645	2	1	Median	1.0359	0.98557	22.297	3	1	Median	1.0138	1.0732	19.362	2	1	Median	925610000	486680000	438930000	133600000	59069000	74533000	171620000	101740000	69881000	327050000	176770000	150280000	293340000	149100000	144240000	11215	603;739	10620	68965;68966;68967;68968;68969;68970;68971;68972;68973;68974	93104;93105;93106;93107;93108;93109;93110;93111;93112	93112			9	
EFGATECINPQDFSK	1	Unmodified	1741.7618	0.76175015	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	63.245	62.768	2	2.6529E-07	56910	160511_QHF_FH_JSI11i_1	172.76	153.51			0.8421	0.89804	28.285	4	3	Median	NaN	NaN	NaN	0	0	Median	0.70669	0.83508	NaN	1	1	Median	0.78231	0.75339	35.119	2	2	Median	1.092	1.1428	NaN	1	0	Median	306270000	154370000	151900000	0	0	0	58724000	33377000	25347000	153290000	83289000	69999000	94256000	37700000	56556000	11216	1006	10621	68975;68976;68977;68978	93113;93114;93115;93116	93113			4	
EFGDQAEAAQDATLTTTTFQNEDEK	1	Unmodified	2759.2046	0.20459222	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.185	65.584	3	1.689E-21	59390	160511_QHF_FH_JSI10i_1	132.26	128.62			1.0378	1.257	21.976	4	2	Linear	1.0945	0.88628	NaN	1	1	Median	0.98408	1.1572	NaN	1	0	Median	1.4395	1.4214	NaN	1	0	Median	0.89122	0.92023	NaN	1	1	Median	335840000	193830000	142010000	50218000	32275000	17942000	90202000	55825000	34377000	92950000	33480000	59470000	102470000	72250000	30224000	11217	4337	10622	68979;68980;68981;68982	93117;93118;93119;93120;93121;93122	93120			6	
EFGDSLSLEILQIIK	1	Unmodified	1703.9346	0.93455278	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	103.03	102.94	2;3	2.3604E-30	90318	160511_QHF_FH_JSI11i_2	195.25	154.66			0.84314	0.83565	22.786	3	0	Plateau	0.92412	0.78906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84314	0.83565	NaN	1	0	Median	1.0819	1.2012	NaN	1	0	Median	191560000	84321000	107240000	37705000	16235000	21470000	0	0	0	101030000	55603000	45429000	52826000	12483000	40342000	11218	5295	10623	68983;68984;68985;68986	93123;93124;93125	93124			3	
EFGEEALNSLQK	1	Unmodified	1363.662	0.66195975	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			57.181	56.787	2	0.0028994	51237	160511_QHF_FH_JSI10i_1	68.436	57.912			0.66616	0.79247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66616	0.79247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55211000	30496000	24715000	0	0	0	55211000	30496000	24715000	0	0	0	0	0	0	11219	4494	10624	68987	93126	93126			1	
EFGFSGLNVK	1	Unmodified	1096.5553	0.55530983	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		66.113	65.418	2	0.0039034	58100	160511_QHF_FH_JSI10i_2	55.908	31.71			0.84972	0.94545	1.7507	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79365	0.95722	NaN	1	0	Median	0.90975	0.93382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172290000	99711000	72577000	0	0	0	75257000	48477000	26779000	97031000	51233000	45798000	0	0	0	11220	2485	10625	68988;68989	93127;93128	93128			2	
EFGGGHIK	1	Unmodified	843.4239	0.42390173	2306;3053	Q12792;Q6IBS0	TWF1;TWF2	Twinfilin-1;Twinfilin-2	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	11.27	11.314	2;3	0.001796	8929	160511_QHF_FH_JSI11i_3	52.716	43.944			1.0568	1.0251	29.997	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82833	0.77791	11.147	2	0	Median	1.277	1.2895	4.568	2	0	Median	1031100000	546410000	484710000	0	0	0	0	0	0	411260000	202010000	209250000	619870000	344410000	275460000	11221	2306;3053	10626	68990;68991;68992;68993	93129;93130;93131;93132;93133;93134	93129			6	
EFGGGHIKDEVFGTVK	2	Unmodified	1718.8628	0.86278482	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	2	3	56.64	55.724	2;3	2.5605E-06	47246	160511_QHF_FH_JSI12i_3	93.959	71.042			0.91286	0.93324	42.57	7	1	Median	1.1537	0.94288	59.868	2	1	Median	0.5223	0.59612	49.43	2	0	Median	1.1959	1.134	20.089	2	0	Median	0.91286	0.93324	NaN	1	0	Median	810910000	416790000	394120000	85144000	43998000	41146000	167180000	108490000	58690000	300120000	135190000	164930000	258460000	129100000	129360000	11222	2306	10627	68994;68995;68996;68997;68998;68999;69000;69001;69002;69003	93135;93136;93137;93138;93139;93140;93141;93142;93143;93144;93145;93146;93147;93148;93149;93150;93151;93152;93153;93154;93155	93155			21	
EFGGGHIKDEVFGTVK	2	Acetyl (K)	1760.8733	0.87334951	2306	Q12792	TWF1	Twinfilin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.468	67.143	2	0.0024852	36628	160513_QHF_FH_JSI11Kac_6	125.53	109.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8440000	8440000	0	0	0	0	0	0	0	8440000	8440000	0	0	0	0	11223	2306	10627	69004	93156	93156	2412		1	
EFGIDPQNMFEFWDWVGGR	0	Unmodified	2329.0262	0.026238111	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0		By MS/MS			16	0									1		1			99.627	93.907	2	1.1813E-177	55199	160513_QHF_FH_JSI10Kac_6	299.56	287.58		+	0.84192	1.0003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84192	1.0003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	206890000	106370000	100520000	0	0	0	206890000	106370000	100520000	0	0	0	0	0	0	11224	856;75	10628	69005	93157	93157			1	
EFGLLKPTSAR	1	Acetyl (K)	1259.6874	0.68738664	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.484							3	5		1	2	2	3	71.83	61.153	2	0.0001104	30381	160513_QHF_FH_JSI12Kac_5	96.89	70.951			1.0062	0.95584	120.76	8	1	Median	1.0632	0.8879	NaN	1	0	Median	0.86777	1.0549	25.357	2	0	Median	1.1827	1.1172	38.461	2	0	Median	0.97286	1.029	202.14	3	1	Median	48178000	28286000	19891000	5172200	2300200	2872000	11414000	7093300	4320600	13817000	7347900	6469500	17774000	11545000	6229200	11225	2584	10629	69006;69007;69008;69009;69010;69011;69012;69013	93158;93159;93160;93161;93162;93163;93164;93165;93166	93164	2554		9	
EFGLLKPTSAR	1	Unmodified	1217.6768	0.67682195	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.712	43.112	3	0.02555	35220	160511_QHF_FH_JSI9i_3	38.021	29.917			0.59377	0.49121	NaN	1	1	Median	0.59377	0.49121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28259000	14263000	13996000	28259000	14263000	13996000	0	0	0	0	0	0	0	0	0	11226	2584	10629	69014	93167	93167			1	
EFGPSHFSVLAFPCNQFGESEPRPSK	1	Unmodified	2950.3708	0.37082689	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			83.6	82.354	4	0.0015885	68939	160511_QHF_FH_JSI10i_3	35.918	33.41			0.88195	1.0134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88195	1.0134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19723000	10385000	9338200	0	0	0	19723000	10385000	9338200	0	0	0	0	0	0	11227	3733	10630	69015	93168;93169	93169			2	
EFGPVVIDYGK	1	Unmodified	1222.6234	0.6233894	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	66.789	66.037	2	1.2092E-09	60119	160511_QHF_FH_JSI11i_1	135.55	114.25			1.0194	1.0775	21.411	8	1	Median	1.1487	0.95786	38.342	2	0	Median	0.93027	1.1141	25.466	2	0	Median	0.92811	0.91118	7.9158	2	0	Median	1.1189	1.2079	0.36872	2	1	Median	897050000	449860000	447190000	165630000	90948000	74684000	220690000	111380000	109310000	243270000	136330000	106940000	267460000	111200000	156260000	11228	2517	10631	69016;69017;69018;69019;69020;69021;69022;69023	93170;93171;93172;93173;93174;93175;93176	93170			7	
EFGSLPTTPSEQR	0	Unmodified	1447.6943	0.69432251	288	O15400	STX7	Syntaxin-7	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	45.866	45.013	2	0.00038174	40968	160511_QHF_FH_JSI12i_1	95.483	76.738			2.009	1.9092	4.4918	2	2	Median	2.275	1.9708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7742	1.8495	NaN	1	1	Median	104380000	40773000	63607000	14295000	2576600	11719000	0	0	0	0	0	0	90085000	38197000	51888000	11229	288	10632	69024;69025	93177;93178	93177			2	
EFGTNIK	1	Unmodified	807.41267	0.41266834	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	4.46	4	5	3				1	1		4	2	4	4	24.389	22.375	2	0.0055967	19684	160511_QHF_FH_JSI10i_1	94.262	41.579			0.86357	0.88562	56.218	12	5	Median	0.90965	0.74846	25.521	3	0	Median	0.53852	0.63333	62.903	2	1	Median	1.4167	1.3949	80.591	4	3	Linear	0.80048	0.8886	50.432	3	1	Plateau	11714000000	5620400000	6093300000	1686700000	900050000	786690000	2687700000	1458300000	1229300000	4910800000	2027800000	2883000000	2428500000	1234300000	1194200000	11230	1057	10633	69026;69027;69028;69029;69030;69031;69032;69033;69034;69035;69036;69037;69038;69039	93179;93180;93181;93182;93183;93184;93185;93186;93187;93188;93189;93190;93191;93192;93193;93194;93195;93196	93185			18	
EFGVSPDK	1	Unmodified	877.41815	0.41814765	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	23.522	22.984	1;2	0.015178	19936	160511_QHF_FH_JSI11i_1	50.703	30.148			1.0158	1.1148	24.641	5	1	Median	1.377	1.1252	NaN	1	0	Median	0.93881	1.1148	NaN	1	0	Median	1.2413	1.2249	NaN	1	0	Median	0.81973	0.83334	33.219	2	1	Median	1779600000	886820000	892830000	379810000	132840000	246970000	414330000	244480000	169850000	449970000	225040000	224930000	535530000	284450000	251080000	11231	1283	10634	69040;69041;69042;69043;69044	93197;93198;93199;93200	93197			4	
EFHAPLIIDENGVHELVK	1	Unmodified	2059.0738	0.07384023	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	3	2	2	77.786	77.065	3;4	5.4988E-05	66771	160511_QHF_FH_JSI12i_2	66.809	58.912			1.1493	1.1737	18.488	6	1	Median	1.2037	1.0547	NaN	1	0	Median	1.1226	1.3598	35.03	2	1	Median	1.0973	1.1638	NaN	1	0	Median	1.1583	1.2131	3.4584	2	0	Median	198840000	86852000	111980000	27393000	12805000	14588000	57380000	24331000	33049000	38181000	21115000	17066000	75882000	28601000	47281000	11232	2728	10635	69045;69046;69047;69048;69049;69050;69051;69052	93201;93202;93203;93204;93205;93206;93207;93208;93209;93210	93203			10	
EFHGNIIK	1	Unmodified	956.50797	0.50796571	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.606	1	6	10							3	4	4	6	24.068	23.458	2;3	0.0017165	19651	160511_QHF_FH_JSI11i_3	98.997	78.715			1.8374	1.9219	89.145	16	10	Median	2.3032	1.8874	40.275	3	1	Median	0.99147	1.2093	96.271	4	3	Median	1.8131	1.8063	79.031	4	3	Median	1.7727	1.9571	107.24	5	3	Median	2756700000	1066800000	1689800000	166280000	58236000	108050000	422920000	161270000	261650000	884500000	389110000	495390000	1283000000	458210000	824750000	11233	3889	10636	69053;69054;69055;69056;69057;69058;69059;69060;69061;69062;69063;69064;69065;69066;69067;69068;69069	93211;93212;93213;93214;93215;93216;93217;93218;93219;93220;93221;93222;93223;93224;93225;93226	93212			16	
EFHIVQVSSSSK	1	Unmodified	1346.683	0.68302954	5524	Q9Y2L5	TRAPPC8	Trafficking protein particle complex subunit 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			46.562	37.952	3	0.037546	20969	160513_QHF_FH_JSI10Kac_6	30.867	23.256			0.4298	0.50939	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4298	0.50939	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7885400	4427900	3457500	0	0	0	7885400	4427900	3457500	0	0	0	0	0	0	11234	5524	10637	69070	93227	93227			1	
EFHKQITAR	1	Acetyl (K)	1170.6146	0.61455605	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		33.536	24.211	3	0.030041	13612	160513_QHF_FH_JSI11Kac_6	39.785	32.404			0.24338	0.23742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24338	0.23742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5767100	4456500	1310600	0	0	0	0	0	0	5767100	4456500	1310600	0	0	0	11235	3764	10638	69071	93228	93228			1	
EFHLEYDK	1	Unmodified	1079.4924	0.49237523	5165	Q9NZN8	CNOT2	CCR4-NOT transcription complex subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.162	36.72	3	0.037016	31452	160511_QHF_FH_JSI11i_2	30.569	12.129			2.746	2.6943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.746	2.6943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64983000	15902000	49081000	0	0	0	0	0	0	64983000	15902000	49081000	0	0	0	11236	5165	10639	69072	93229	93229			1	
EFHLNESGDPSSK	1	Unmodified	1445.6423	0.64228694	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.72	6.2	9	8	8				6	8	1	9	10	11	10	30.103	26.239	2;3	2.0045E-15	22180	160511_QHF_FH_JSI12i_2	176.05	154.06			0.89273	0.86572	17.748	39	3	Median	1.017	0.84972	9.1491	9	0	Median	0.79079	0.95036	18.936	10	0	Median	0.91696	0.88543	18.188	10	2	Median	0.81234	0.85289	20.086	10	1	Median	16553000000	8179100000	8374000000	2394600000	1148300000	1246300000	3635300000	1860200000	1775100000	5815700000	2823400000	2992400000	4707600000	2347200000	2360300000	11237	2164	10640	69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089;69090;69091;69092;69093;69094;69095;69096;69097;69098;69099;69100;69101;69102;69103;69104;69105;69106;69107;69108;69109;69110;69111;69112	93230;93231;93232;93233;93234;93235;93236;93237;93238;93239;93240;93241;93242;93243;93244;93245;93246;93247;93248;93249;93250;93251;93252;93253;93254;93255;93256;93257;93258;93259;93260;93261;93262;93263;93264;93265;93266;93267;93268;93269;93270;93271;93272;93273;93274;93275;93276;93277;93278;93279;93280;93281;93282;93283;93284;93285;93286;93287;93288;93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304;93305;93306;93307;93308;93309;93310;93311;93312;93313;93314;93315;93316;93317;93318;93319;93320;93321;93322;93323;93324;93325	93245			96	
EFHTTGLAWSK	1	Unmodified	1275.6248	0.62478638	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.92		4	7						4	3	3	5	4	49.135	45.957	2;3	2.7697E-09	38360	160511_QHF_FH_JSI10i_3	128.03	83.686			0.92934	0.93544	25.566	15	3	Median	0.93118	0.79049	50.017	3	1	Median	0.86653	1.0317	2.8715	3	0	Plateau	0.94936	0.92754	23.182	5	2	Median	0.87602	0.92797	11.561	4	0	Median	7974500000	3756400000	4218100000	549450000	259360000	290080000	989180000	520320000	468870000	2379500000	1163300000	1216200000	4056300000	1813400000	2242900000	11238	2169	10641	69113;69114;69115;69116;69117;69118;69119;69120;69121;69122;69123;69124;69125;69126;69127	93326;93327;93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338;93339;93340;93341;93342;93343;93344;93345;93346;93347;93348;93349;93350;93351;93352;93353	93336			28	
EFHTTGLAWSKTGPVAK	2	Acetyl (K)	1870.9577	0.95774784	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		70.901	62.389	2;3	1.4537E-41	33776	160513_QHF_FH_JSI11Kac_6	176.91	137.77			0.68141	0.72371	134.2	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5898	1.8693	NaN	1	1	Median	0.29207	0.28019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111910000	71890000	40015000	0	0	0	28964000	10667000	18297000	82941000	61224000	21718000	0	0	0	11239	2169	10642	69128;69129;69130	93354;93355;93356	93355	2285		3	
EFHVLPYR	0	Unmodified	1059.5502	0.55016488	2929	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2.8	0.4		1	4							2	1	1	1	46.935	46.08	3	0.0033052	37810	160511_QHF_FH_JSI9i_3	45.68	32.89			0.85033	0.75205	17.382	4	0	Linear	1.4377	1.1912	NaN	1	0	Median	0.7831	0.90795	NaN	1	0	Median	0.91943	0.84918	NaN	1	0	Median	0.78642	0.80572	NaN	1	0	Median	186530000	94343000	92189000	31708000	11050000	20658000	37205000	21650000	15555000	51240000	21794000	29446000	66379000	39849000	26530000	11240	2929	10643	69131;69132;69133;69134;69135	93357;93358	93357			2	
EFIAPVTLK	1	Unmodified	1016.5906	0.59063271	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	65.975	64.097	2	0.00032933	56814	160511_QHF_FH_JSI10i_2	82.75	60.791			1.1349	1.0108	44.173	9	2	Median	0.84897	0.70826	50.296	2	1	Median	0.69104	0.84459	9.9148	2	0	Median	0.87463	0.87677	53.581	3	1	Plateau	1.3015	1.3818	0.528	2	0	Median	656490000	366590000	289900000	132930000	87899000	45033000	173570000	105310000	68267000	220490000	116220000	104270000	129490000	57161000	72328000	11241	140	10644	69136;69137;69138;69139;69140;69141;69142;69143;69144	93359;93360;93361;93362;93363;93364;93365;93366;93367;93368	93368			10	
EFIEFLK	1	Unmodified	924.49567	0.49566969	5337	Q9UJ41	RABGEF1	Rab5 GDP/GTP exchange factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	73.588	72.701	2	0.023222	62734	160511_QHF_FH_JSI12i_2	55.676	40.455			0.44754	0.53847	51.208	3	2	Median	NaN	NaN	NaN	0	0	Median	0.44754	0.53847	NaN	1	1	Median	0.63361	0.67341	NaN	1	1	Median	0.23235	0.25341	NaN	1	0	Median	82880000	55811000	27070000	0	0	0	25943000	18563000	7380000	38299000	23504000	14795000	18639000	13744000	4894800	11242	5337	10645	69145;69146;69147	93369;93370;93371	93369			3	
EFIEGVSQFSVK	1	Unmodified	1368.6925	0.6925316	2050	P63098	PPP3R1	Calcineurin subunit B type 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6	6.38	1	1						1		1		1	1	72.503	66.522	2	0.0037664	58062	160511_QHF_FH_JSI12i_2	64.439	52.949			0.52886	0.54152	151.99	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19957	0.18487	NaN	1	1	Median	1.4014	1.5862	NaN	1	1	Median	69440000	34174000	35267000	0	0	0	0	0	0	1227400	920330	307050	68213000	33253000	34959000	11243	2050	10646	69148;69149;69150	93372;93373;93374	93372			3	
EFIEMWR	0	Unmodified	1009.4691	0.46913736	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.341	66.442	2	0.0157	58027	160511_QHF_FH_JSI11i_2	64.236	51.277			0.86056	0.92632	4.862	4	0	Median	1.1244	0.95034	NaN	1	0	Median	0.72914	0.9029	NaN	1	0	Median	0.86206	0.8608	NaN	1	0	Median	0.85906	0.95417	NaN	1	0	Median	387550000	183970000	203580000	52740000	21923000	30817000	101760000	50856000	50909000	143970000	68794000	75180000	89070000	42400000	46670000	11244	3217	10647	69151;69152;69153;69154	93375;93376;93377;93378;93379;93380	93378			6	
EFIGQQLILIIK	1	Unmodified	1413.8595	0.85953735	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.7	85.328	2	1.354E-26	49885	160513_QHF_FH_JSI10Kac_6	164.66	147.95			0.74961	0.80514	11.635	4	4	Median	0.96056	0.83207	NaN	1	1	Median	0.66906	0.79941	NaN	1	1	Median	0.83986	0.8109	NaN	1	1	Median	0.60348	0.64655	NaN	1	1	Median	264300000	134050000	130240000	63843000	28820000	35022000	90906000	45149000	45757000	67020000	35170000	31850000	42528000	24915000	17613000	11245	4337	10648	69155;69156;69157;69158;69159;69160;69161;69162	93381;93382;93383;93384;93385;93386;93387;93388	93388			8	
EFIHILYFR	0	Unmodified	1236.6655	0.66552898	5143	Q9NZ32	ACTR10	Actin-related protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			10						8	5	4	5	4	81.348	77.19	2;3	4.0288E-08	39119	160513_QHF_FH_JSI9Kac_6	141.2	108.88			0.88925	0.85743	27.695	15	6	Median	0.8805	0.74778	33.649	4	1	Median	0.77262	0.92112	28.602	4	2	Median	1.0206	0.97405	11.353	3	1	Median	0.75369	0.77165	32.634	4	2	Median	4745800000	2644200000	2101600000	1205600000	686460000	519100000	1925600000	1110200000	815420000	779660000	382410000	397250000	835000000	465170000	369820000	11246	5143	10649	69163;69164;69165;69166;69167;69168;69169;69170;69171;69172;69173;69174;69175;69176;69177;69178;69179;69180	93389;93390;93391;93392;93393;93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412	93400			24	
EFINLQSALESERR	0	Unmodified	1690.8638	0.86384745	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.911	67.431	3	0.00019203	55388	160511_QHF_FH_JSI9i_3	53.3	46.684			0.83547	0.80554	23.436	2	0	Median	1.1751	0.95073	NaN	1	0	Median	0.59399	0.68253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98094000	43248000	54846000	47827000	18194000	29634000	50267000	25054000	25212000	0	0	0	0	0	0	11247	475	10650	69181;69182	93413;93414;93415	93415			3	
EFIPLPR	0	Unmodified	870.49634	0.49633839	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.117	59.219	2	0.008553	52109	160511_QHF_FH_JSI9i_2	72.021	44.9			1.2003	1.1929	18.532	3	1	Median	NaN	NaN	NaN	0	0	Median	0.75571	0.96253	NaN	1	1	Median	1.2003	1.1929	NaN	1	0	Median	1.2744	1.3921	NaN	1	0	Median	56595000	28532000	28062000	0	0	0	12098000	7269600	4828500	26001000	13177000	12824000	18495000	8085700	10410000	11248	405	10651	69183;69184;69185;69186	93416;93417;93418;93419	93417			4	
EFIQEPAK	1	Unmodified	960.49165	0.49164694	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	28.416	27.826	2	0.00091687	24587	160511_QHF_FH_JSI11i_1	96.492	64.021			9.5421	2.2177	125.93	4	3	Linear	2.6256	2.1733	NaN	1	1	Median	0.76008	0.8874	NaN	1	1	Median	17.571	17.408	NaN	1	0	Median	2.1605	2.263	NaN	1	1	Median	565860000	223590000	342270000	152530000	58292000	94238000	148080000	84550000	63535000	103210000	5467600	97738000	162040000	75277000	86759000	11249	197	10652	69187;69188;69189;69190;69191;69192;69193	93420;93421;93422;93423;93424;93425;93426	93420			7	
EFIVFLK	1	Unmodified	894.52149	0.52149051	2816	Q3KRA6	C2orf76	UPF0538 protein C2orf76	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	80.779	79.776	2	0.020039	68982	160511_QHF_FH_JSI12i_2	60.961	21.419			1.0232	1.1656	80.487	3	3	Median	NaN	NaN	NaN	0	0	Median	2.1485	2.5106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67546	0.76512	59.529	2	2	Median	27613000	14060000	13552000	0	0	0	5969200	1266500	4702700	0	0	0	21644000	12794000	8849700	11250	2816	10653	69194;69195;69196	93427;93428;93429	93428			3	
EFIYYADVK	1	Unmodified	1146.5597	0.55972651	1729	P51151;Q9NP90	RAB9A;RAB9B	Ras-related protein Rab-9A;Ras-related protein Rab-9B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		57.933	57.43	2	0.00087552	49830	160511_QHF_FH_JSI11i_2	83.948	70.369			1.482	1.4932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.482	1.4932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88867000	35761000	53106000	0	0	0	0	0	0	88867000	35761000	53106000	0	0	0	11251	1729	10654	69197	93430	93430			1	
EFKDPLLQEPPAWFK	2	Unmodified	1843.9509	0.95087155	2875	Q5BJF2	TMEM97	Transmembrane protein 97	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							2		1	3	90.986	90.674	2;3	1.8771E-10	78611	160511_QHF_FH_JSI12i_3	103.88	96.992			0.99526	1.0107	10.467	4	1	Median	0.95642	0.83988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1258	1.0481	NaN	1	0	Median	0.95035	1.0112	5.2165	2	1	Median	308990000	157800000	151200000	28157000	13471000	14686000	0	0	0	85664000	44290000	41374000	195170000	100040000	95136000	11252	2875	10655	69198;69199;69200;69201;69202;69203	93431;93432;93433;93434;93435;93436;93437;93438	93438			8	
EFKEVLK	2	Acetyl (K)	933.51713	0.51713341	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	53.889	43.33	2	0.012301	24672	160513_QHF_FH_JSI12Kac_4	87.696	34.345			1.0734	1.1603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0734	1.1603	NaN	1	0	Median	14216000	6544100	7672400	0	0	0	0	0	0	0	0	0	14216000	6544100	7672400	11253	1936	10656	69204	93439	93439	1944;1945		1	
EFKPLPGR	1	Unmodified	942.5287	0.52870115	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		23.72	23.72	3	0.02014	20174	160511_QHF_FH_JSI11i_3	43.808	26.422			2.6377	2.5261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6377	2.5261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42154000	12114000	30040000	0	0	0	0	0	0	42154000	12114000	30040000	0	0	0	11254	2485	10657	69205;69206	93440;93441	93440			2	
EFLALASSSLLK	1	Unmodified	1277.7231	0.72310344	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		5	2						2	3	2	1	3	87.244	84.408	2	5.3836E-05	75588	160511_QHF_FH_JSI12i_2	109.16	98.348			1.369	1.3087	41.058	8	6	Median	1.3817	1.1725	38.911	3	2	Median	1.2197	1.4608	NaN	1	1	Median	2.1914	2.2478	NaN	1	1	Median	0.89988	0.99456	56.584	3	2	Median	311220000	138610000	172610000	87693000	39439000	48254000	49470000	25162000	24308000	57871000	25495000	32376000	116180000	48514000	67668000	11255	5507	10658	69207;69208;69209;69210;69211;69212;69213;69214;69215	93442;93443;93444;93445;93446;93447;93448;93449	93443			7	
EFLAQEDPSLMAIR	0	Unmodified	1618.8025	0.80249275	5847				yes	yes	0	0	0	0			By MS/MS		15	0								1				1		83.809	73.282	2	0.056893	38683	160513_QHF_FH_JSI11Kac_5	35.414	6.6872	+		0.91808	0.91286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91808	0.91286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4546300	2244000	2302300	0	0	0	0	0	0	4546300	2244000	2302300	0	0	0	11256	5847	10659	69216	93450	93450			1	
EFLDFFWDIAKPEQETR	1	Unmodified	2170.0371	0.037120373	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	94.657	87.076	3	3.041E-05	50825	160513_QHF_FH_JSI10Kac_6	93.152	80.115			1.5468	1.7036	6.4	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5572	1.7825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5365	1.6282	NaN	1	0	Median	165860000	64084000	101780000	0	0	0	112050000	42644000	69407000	0	0	0	53810000	21440000	32370000	11257	4361	10660	69217;69218	93451;93452	93452			2	
EFLEDYDDDR	0	Unmodified	1315.5204	0.52044047	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	61.563	60.832	3	0.052548	55372	160511_QHF_FH_JSI11i_1	17.026	14.968			0.89138	1.0885	29.119	7	0	Median	1.6864	1.4479	NaN	1	0	Median	0.89046	1.0741	1.8919	2	0	Median	1.2153	1.2073	2.2164	2	0	Median	0.63413	0.68574	8.7672	2	0	Median	529550000	254780000	274770000	80088000	23459000	56629000	140930000	74847000	66082000	171350000	75600000	95747000	137190000	80876000	56312000	11258	1679	10661	69219;69220;69221;69222;69223;69224;69225	93453;93454;93455;93456;93457;93458;93459;93460;93461;93462;93463	93453			11	
EFLEFRK	1	Unmodified	967.51272	0.51271674	500	O75323	GBAS	Protein NipSnap homolog 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		39.518	39.518	3	0.001677	34676	160511_QHF_FH_JSI11i_3	83.753	8.5632			0.84105	0.78109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84105	0.78109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	219470000	99802000	119670000	0	0	0	0	0	0	219470000	99802000	119670000	0	0	0	11259	500	10662	69226	93464	93464			1	
EFLEKEELPR	1	Unmodified	1288.6663	0.66631685	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.469	38.289	4	0.052985	32517	160511_QHF_FH_JSI12i_3	24.855	12.692			1.4572	1.4998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4572	1.4998	NaN	1	1	Median	143290000	63661000	79631000	0	0	0	0	0	0	0	0	0	143290000	63661000	79631000	11260	2448	10663	69227	93465	93465			1	
EFLERFK	1	Unmodified	967.51272	0.51271674	4839	Q9HBE4	IL21	Interleukin-21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							3	2	1	1	40.685	39.807	3	0.0035406	32433	160511_QHF_FH_JSI9i_3	68.915	0			0.92927	0.96131	24.354	6	1	Median	1.4388	1.1976	21.32	2	1	Median	0.89754	1.0663	24.43	2	0	Median	0.84105	0.78109	NaN	1	0	Median	0.72242	0.78748	NaN	1	0	Median	644980000	287830000	357150000	148310000	42058000	106250000	203150000	97563000	105590000	219470000	99802000	119670000	74052000	48402000	25650000	11261	4839	10664	69228;69229;69230;69231;69232;69233;69234	93466;93467;93468;93469;93470;93471;93472;93473;93474	93471			9	
EFLGTYNK	1	Unmodified	970.476	0.47599688	5661	Q9Y5J7	TIMM9	Mitochondrial import inner membrane translocase subunit Tim9	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		33.039	32.367	2	0.00056979	27523	160511_QHF_FH_JSI11i_2	98.997	32.003			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11262	5661	10665	69235;69236	93475;93476	93475			2	
EFLHAQEEVK	1	Unmodified	1228.6088	0.60880197	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.89		11	3					3		2	4	4	7	29.829	27.263	2;3	4.0333E-06	22837	160511_QHF_FH_JSI11i_2	118.4	97.778			0.9439	1.0404	40.129	14	8	Median	1.8613	1.5825	35.143	2	1	Median	0.62877	0.75394	37.119	2	1	Median	1.0476	1.058	41.345	4	2	Median	0.92714	1.0398	37.945	6	4	Median	1664200000	754340000	909870000	251040000	93979000	157060000	228690000	112280000	116400000	589680000	257070000	332610000	594810000	291000000	303800000	11263	1567	10666	69237;69238;69239;69240;69241;69242;69243;69244;69245;69246;69247;69248;69249;69250;69251;69252;69253	93477;93478;93479;93480;93481;93482;93483;93484;93485;93486;93487;93488;93489;93490;93491;93492;93493;93494;93495	93486			19	
EFLHNQGK	1	Unmodified	971.48248	0.48247924	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		8	8							5	4	5	2	10.511	10.169	2;3	0.00010927	7711	160511_QHF_FH_JSI11i_3	96.492	79.252			0.89034	0.96488	31.557	13	4	Median	1.2723	1.0845	50.247	4	3	Median	0.74752	0.91669	28.468	3	1	Plateau	0.98482	0.94708	22.575	4	0	Median	0.88164	0.91101	9.0701	2	0	Median	3816400000	2032300000	1784100000	387720000	176300000	211420000	463990000	262040000	201950000	1258400000	696580000	561860000	1706200000	897340000	808870000	11264	4715	10667	69254;69255;69256;69257;69258;69259;69260;69261;69262;69263;69264;69265;69266;69267;69268;69269	93496;93497;93498;93499;93500;93501;93502;93503;93504;93505;93506;93507;93508;93509;93510;93511;93512;93513;93514;93515	93498			20	
EFLIALLEK	1	Unmodified	1074.6325	0.63249752	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	98.596	98.411	2	0.00079493	86162	160511_QHF_FH_JSI11i_2	73.985	62.216			0.56236	0.62665	38.105	3	2	Median	NaN	NaN	NaN	0	0	Median	0.56236	0.62665	NaN	1	1	Median	1.0803	1.0529	NaN	1	0	Median	0.48179	0.50094	NaN	1	1	Median	19215000	10104000	9111400	0	0	0	3913700	2130500	1783200	9969100	4875000	5094100	5332300	3098200	2234100	11265	486	10668	69270;69271;69272	93516;93517;93518;93519	93517			4	
EFLKWSIK	2	Acetyl (K)	1091.6015	0.60153174	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.168	69.853	2	0.01103	38280	160513_QHF_FH_JSI11Kac_6	73.233	37.938			4.1663	3.8853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1663	3.8853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62466000	27344000	35122000	0	0	0	0	0	0	62466000	27344000	35122000	0	0	0	11266	2094	10669	69273	93520	93520	2188;2189		1	
EFLLGFQFIFASMQKPEGLPHISDVVLDK	2	Unmodified	3304.7206	0.72060761	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			98.158	90.731	4	3.8597E-34	51195	160513_QHF_FH_JSI9Kac_6	134.77	109.75			0.71548	0.71457	53.253	2	1	Median	0.58493	0.49035	NaN	1	0	Median	0.87516	1.0413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	296520000	152320000	144200000	137380000	86336000	51047000	159130000	65984000	93151000	0	0	0	0	0	0	11267	2217	10670	69274;69275	93521;93522	93521			2	
EFLLIFR	0	Unmodified	936.54329	0.54328858	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	89.713	86.594	2	3.5964E-11	42896	160513_QHF_FH_JSI9Kac_6	148.28	125.66			0.87711	0.91237	17.257	12	0	Median	0.95673	0.83335	23.402	3	0	Median	0.8611	1.0335	16.33	3	0	Median	0.9671	0.91703	12.044	3	0	Median	0.86255	0.90774	25.236	3	0	Median	1564500000	847310000	717150000	302500000	152290000	150220000	545580000	305130000	240450000	422920000	205050000	217870000	293460000	184850000	108620000	11268	3998	10671	69276;69277;69278;69279;69280;69281;69282;69283;69284;69285;69286;69287	93523;93524;93525;93526;93527;93528;93529;93530;93531;93532;93533;93534;93535;93536;93537;93538;93539;93540;93541;93542	93536			20	
EFLLIFRK	1	Unmodified	1064.6383	0.6382516	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			9						9	4	4	6	4	75.641	70.778	2;3	9.6099E-10	38436	160513_QHF_FH_JSI10Kac_6	132.29	110.51			0.84885	0.82646	39.29	17	6	Median	0.96126	0.78153	11.682	4	0	Median	0.70809	0.83975	5.9777	4	0	Median	0.73499	0.696	64.108	6	5	Median	0.95617	1.0256	42.293	3	1	Plateau	1765500000	955820000	809640000	374570000	179760000	194820000	836880000	486810000	350070000	319570000	159960000	159610000	234430000	129290000	105140000	11269	3998	10672	69288;69289;69290;69291;69292;69293;69294;69295;69296;69297;69298;69299;69300;69301;69302;69303;69304;69305	93543;93544;93545;93546;93547;93548;93549;93550;93551;93552;93553;93554;93555;93556;93557;93558;93559;93560;93561;93562;93563;93564;93565;93566;93567;93568;93569;93570;93571;93572;93573	93573			31	
EFLLSLDDSVDETEAVK	1	Unmodified	1908.9204	0.92041886	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	88.669	88.38	2	2.4076E-28	80235	160511_QHF_FH_JSI10i_1	222.94	173.44			0.85494	0.9367	5.0149	2	2	Median	NaN	NaN	NaN	0	0	Median	0.83339	0.97051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87705	0.90406	NaN	1	1	Median	95107000	56458000	38649000	0	0	0	48273000	25884000	22389000	0	0	0	46834000	30574000	16260000	11270	4521	10673	69306;69307;69308	93574;93575;93576;93577	93575			4	
EFLLSMANR	0	Unmodified	1079.5434	0.54336494	2408	Q13427	PPIG	Peptidyl-prolyl cis-trans isomerase G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	62.198	61.512	2	0.00011238	53084	160511_QHF_FH_JSI12i_3	92.653	64.166			1.0511	0.91219	22.938	4	0	Linear	1.8575	1.6235	NaN	1	0	Median	0.98841	1.1284	NaN	1	0	Median	1.1178	1.0318	NaN	1	0	Median	0.96449	0.97425	NaN	1	0	Median	281150000	150020000	131130000	32165000	10124000	22040000	34827000	16756000	18071000	93935000	50875000	43061000	120220000	72265000	47955000	11271	2408	10674	69309;69310;69311;69312	93578;93579;93580;93581	93581			4	
EFLPEGQDIGAFVAEQK	1	Unmodified	1876.9207	0.92069363	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								3	4	4	2	85.277	84.79	2;3	4.0639E-17	75334	160511_QHF_FH_JSI9i_1	136.99	132.38			1.0631	1.1629	17.296	13	1	Median	1.3091	1.0817	21.674	3	0	Plateau	1.0182	1.2007	22.565	4	0	Median	1.0976	1.0776	12.881	4	1	Median	1.0231	1.0573	3.4091	2	0	Median	1842800000	882130000	960680000	223650000	98060000	125590000	541950000	282840000	259110000	570720000	245570000	325150000	506490000	255650000	250840000	11272	2217	10675	69313;69314;69315;69316;69317;69318;69319;69320;69321;69322;69323;69324;69325	93582;93583;93584;93585;93586;93587;93588;93589;93590;93591;93592;93593;93594;93595;93596;93597;93598;93599;93600;93601;93602;93603;93604;93605;93606;93607;93608;93609;93610;93611	93605			29	
EFLPQSAFLK	1	Unmodified	1178.6336	0.63356015	1478	P38571	LIPA	Lysosomal acid lipase/cholesteryl ester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.481	72.609	2	0.00057842	63631	160511_QHF_FH_JSI11i_2	77.677	58.897			0.63274	0.63182	36.76	4	0	Median	0.53224	0.46834	NaN	1	0	Median	0.43429	0.53422	NaN	1	0	Median	0.75221	0.74725	NaN	1	0	Median	0.93759	1.0641	NaN	1	0	Median	163140000	99848000	63289000	28105000	19479000	8626000	34078000	21974000	12104000	54163000	31045000	23118000	46792000	27350000	19442000	11273	1478	10676	69326;69327;69328;69329	93612;93613;93614	93614			3	
EFLQIDLHTLHFITLVGTQGR	0	Unmodified	2437.3118	0.31177909	2769	Q16832	DDR2	Discoidin domain-containing receptor 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				93.45	84.51	4	0.00049535	47681	160513_QHF_FH_JSI9Kac_6	93.729	71.719			1.274	1.0966	NaN	1	1	Median	1.274	1.0966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34027000	6889100	27138000	34027000	6889100	27138000	0	0	0	0	0	0	0	0	0	11274	2769	10677	69330	93615	93615			1	
EFLQINSLGK	1	Unmodified	1147.6237	0.62372375	949	P0CG30;P0CG29	GSTT2B;GSTT2	Glutathione S-transferase theta-2B;Glutathione S-transferase theta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.97	1	4						2		2	2	2	1	65.733	63.296	2	1.8593E-07	55654	160511_QHF_FH_JSI9i_2	117.89	71.464			1.2248	1.3068	78.148	6	2	Median	1.7681	1.4823	22.141	2	1	Median	1.0866	1.3474	NaN	1	0	Median	0.54438	0.5367	134.44	2	1	Median	1.0463	1.167	NaN	1	0	Median	427160000	236920000	190230000	56498000	18027000	38471000	80394000	49883000	30511000	200500000	111730000	88770000	89768000	57288000	32480000	11275	949	10678	69331;69332;69333;69334;69335;69336;69337	93616;93617;93618;93619;93620;93621;93622;93623;93624;93625;93626;93627;93628	93621			13	
EFLQTESPESTELQSR	0	Unmodified	1879.88	0.87995103	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.066	50.4	2	0.0018601	45680	160511_QHF_FH_JSI12i_1	67.456	47.25			1.3386	1.3784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3386	1.3784	NaN	1	1	Median	34611000	16801000	17810000	0	0	0	0	0	0	0	0	0	34611000	16801000	17810000	11276	3811	10679	69338	93629	93629			1	
EFLSEASIMGQFEHPNIIR	0	Unmodified	2217.0888	0.088838367	1833	P54760	EPHB4	Ephrin type-B receptor 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	95.52	95.528	3	2.6353E-08	82816	160511_QHF_FH_JSI12i_3	105.9	91.284			1.2731	1.1942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2731	1.1942	NaN	1	0	Median	31510000	19195000	12315000	0	0	0	0	0	0	0	0	0	31510000	19195000	12315000	11277	1833	10680	69339	93630;93631	93631			2	
EFLSEPDLASYSVVMVDEAHER	0	Unmodified	2522.1635	0.16351945	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	93.736	93.311	3	2.4416E-13	82088	160511_QHF_FH_JSI11i_2	115.42	107.61			1.0832	1.1393	10.043	4	0	Median	1.566	1.3403	NaN	1	0	Median	0.88586	1.0805	NaN	1	0	Median	1.1653	1.1916	NaN	1	0	Median	1.0069	1.0892	NaN	1	0	Median	139670000	67840000	71829000	23601000	11329000	12273000	27054000	13528000	13526000	57657000	28250000	29407000	31357000	14733000	16624000	11278	398	10681	69340;69341;69342;69343	93632;93633;93634;93635;93636;93637;93638;93639;93640	93637			9	
EFLVAGGEDFK	1	Unmodified	1210.587	0.58700389	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	4.44	4	5	2				2			3	3	4	3	62.392	60.12	2	7.3975E-13	54414	160511_QHF_FH_JSI10i_1	142.83	127.68			1.0533	1.1181	50.947	13	3	Median	1.4185	1.2179	18.604	3	0	Median	0.74897	0.89573	23.347	3	0	Plateau	1.0279	1.03	93.586	4	3	Median	1.0533	1.1181	6.0683	3	0	Median	3517400000	1819000000	1698400000	543880000	240700000	303180000	771520000	474780000	296740000	1509700000	685710000	824040000	692280000	417840000	274440000	11279	5595	10682	69344;69345;69346;69347;69348;69349;69350;69351;69352;69353;69354;69355;69356	93641;93642;93643;93644;93645;93646;93647;93648;93649;93650;93651;93652;93653;93654;93655;93656;93657;93658;93659;93660	93651			20	
EFLVLALPGFVWK	1	Unmodified	1517.8646	0.86462272	2946	Q5T447	HECTD3	E3 ubiquitin-protein ligase HECTD3	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		98.613	89.34	2	0.00015189	51153	160513_QHF_FH_JSI11Kac_6	111.65	97.494			1.1389	1.0373	2.1306	2	0	Median	1.2199	1.0531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.0218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135160000	64568000	70588000	63386000	28416000	34970000	0	0	0	71770000	36151000	35618000	0	0	0	11280	2946	10683	69357;69358	93661	93661			0	
EFLVPSREPGK	1	Unmodified	1257.6717	0.67173657	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		4	4							1	2	5		37.408	36.925	2;3	0.0032526	32315	160511_QHF_FH_JSI11i_3	57.802	44.448			1.3392	1.1914	37.319	6	3	Median	1.3766	1.1539	NaN	1	0	Median	0.79018	0.98507	NaN	1	0	Median	1.4005	1.354	47.624	4	3	Median	NaN	NaN	NaN	0	0	Median	447410000	220700000	226710000	73496000	30497000	42998000	98291000	58945000	39346000	275620000	131260000	144370000	0	0	0	11281	3119	10684	69359;69360;69361;69362;69363;69364;69365;69366	93662;93663;93664;93665;93666;93667;93668	93663			7	
EFLWQHVELVLSK	1	Unmodified	1626.877	0.87697832	3624	Q8ND04	SMG8	Protein SMG8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	99.177	99.196	3	0.00031709	85951	160511_QHF_FH_JSI12i_3	65.219	60.417			0.94671	1.0108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94671	1.0108	NaN	1	0	Median	19019000	11590000	7429500	0	0	0	0	0	0	0	0	0	19019000	11590000	7429500	11282	3624	10685	69367;69368	93669;93670;93671	93670			3	
EFMANTESYLK	1	Unmodified	1331.6068	0.60675306	4386	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	55.842	54.875	2	0.00013233	47560	160511_QHF_FH_JSI11i_2	96.342	66.088			1.2558	1.2211	32.975	3	0	Plateau	1.1614	1.0144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9645	1.9582	NaN	1	0	Median	1.3727	1.4699	NaN	1	0	Median	115130000	50350000	64781000	42100000	20322000	21779000	0	0	0	31189000	12023000	19166000	41842000	18005000	23837000	11283	4386	10686	69369;69370;69371	93672;93673;93674;93675	93675			4	
EFMLMNAR	0	Unmodified	1010.4678	0.46775715	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	53.936	53.517	2	0.010797	47267	160511_QHF_FH_JSI11i_3	54.774	41.785			0.96772	1.0112	35.987	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70364	0.85866	NaN	1	0	Median	0.93511	0.87968	42.837	2	0	Median	1.4589	1.4712	NaN	1	0	Median	175740000	92850000	82893000	0	0	0	38013000	21760000	16253000	95830000	54123000	41706000	41900000	16966000	24934000	11284	4843	10687	69372;69373;69374;69375	93676;93677	93676			2	
EFMLSFAR	0	Unmodified	999.48479	0.48478743	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.949	70.164	2	0.037328	62366	160511_QHF_FH_JSI10i_2	40.067	10.26			0.64344	0.75698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64344	0.75698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16545000	11749000	4796700	0	0	0	16545000	11749000	4796700	0	0	0	0	0	0	11285	4093	10688	69376	93678	93678			1	
EFMNYFHALEIGYR	0	Unmodified	1788.8294	0.8293762	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	90.813	90.78	3	1.07E-05	78712	160511_QHF_FH_JSI12i_3	65.943	59.526			0.72821	0.70845	12.899	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84913	0.7761	NaN	1	0	Median	0.62451	0.64669	NaN	1	1	Median	69616000	42704000	26912000	0	0	0	0	0	0	47201000	28240000	18961000	22416000	14464000	7951700	11286	2535	10689	69377;69378;69379	93679;93680;93681;93682	93682			4	
EFMPPGLQELIPFVK	1	Unmodified	1743.927	0.92696498	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.42	102.32	2	2.9538E-05	88225	160511_QHF_FH_JSI12i_2	122.39	106.14			0.80659	0.86347	10.435	4	0	Median	0.8267	0.70936	NaN	1	0	Median	0.70507	0.87142	NaN	1	0	Median	0.8408	0.8556	NaN	1	0	Median	0.78696	0.88906	NaN	1	0	Median	942960000	501270000	441690000	178950000	92877000	86070000	183210000	109330000	73886000	317540000	157250000	160300000	263250000	141820000	121430000	11287	1667	10690	69380;69381;69382;69383	93683;93684;93685;93686;93687	93683			4	
EFMQHAR	0	Unmodified	917.41777	0.41777049	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			5								2	2	1	8.9855	8.7698	2;3	0.0023233	6473	160511_QHF_FH_JSI11i_3	71.715	60.842			1.0926	1.0633	19.398	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1205	1.293	29.74	2	0	Median	1.096	1.0174	6.2478	2	0	Median	1.0926	1.1141	NaN	1	0	Median	377110000	168890000	208210000	0	0	0	109370000	50282000	59090000	192470000	81156000	111310000	75265000	37456000	37808000	11288	4371	10691	69384;69385;69386;69387;69388	93688;93689;93690;93691	93688			4	
EFMWALK	1	Unmodified	923.45751	0.45751004	1900	P58546	MTPN	Myotrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	2	2	3	72.165	70.363	2	0.0020203	62397	160511_QHF_FH_JSI9i_2	114.02	86.498			0.8663	0.89427	19.779	9	1	Median	0.8962	0.74517	8.5688	2	0	Median	0.71085	0.86626	8.8006	2	0	Median	0.86216	0.85743	5.9489	2	0	Median	0.89368	0.99724	19.714	3	1	Plateau	2649400000	1303200000	1346200000	411050000	185740000	225310000	581650000	346920000	234720000	968770000	454380000	514390000	687900000	316120000	371780000	11289	1900	10692	69389;69390;69391;69392;69393;69394;69395;69396;69397	93692;93693;93694;93695;93696;93697;93698;93699;93700;93701;93702;93703;93704;93705;93706;93707;93708;93709;93710;93711;93712;93713;93714	93704			23	
EFNAEVHR	0	Unmodified	1000.4726	0.47264284	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	14.783	14.41	2;3	0.00030258	11417	160511_QHF_FH_JSI11i_2	120.12	93.157			0.76349	0.81669	17.693	13	4	Median	0.97722	0.83421	0.030449	2	1	Median	0.62777	0.76856	8.5888	2	0	Median	0.70379	0.69404	26.763	4	1	Median	0.76349	0.86058	18.831	5	2	Median	2194000000	1232600000	961430000	266220000	128940000	137280000	340550000	223920000	116630000	835160000	480340000	354810000	752100000	399400000	352700000	11290	1590	10693	69398;69399;69400;69401;69402;69403;69404;69405;69406;69407;69408;69409;69410	93715;93716;93717;93718;93719;93720;93721;93722;93723	93719			9	
EFNAEVHRK	1	Unmodified	1128.5676	0.56760585	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	3.58		4	8						1	4	5	2	2	10.143	9.2862	2;3	2.7029E-11	7023	160511_QHF_FH_JSI10i_3	159.79	136			0.71716	0.78565	30.881	13	1	Median	1.2378	0.98755	18.688	4	1	Median	0.57141	0.65077	16.053	5	0	Plateau	0.49447	0.46717	4.3102	2	0	Median	0.78786	0.7835	14.104	2	0	Median	6323600000	3000000000	3323600000	1962500000	628570000	1334000000	2029900000	1129600000	900320000	1900500000	1017600000	882890000	430600000	224190000	206410000	11291	1590	10694	69411;69412;69413;69414;69415;69416;69417;69418;69419;69420;69421;69422;69423	93724;93725;93726;93727;93728;93729;93730;93731;93732;93733;93734;93735;93736;93737;93738;93739;93740;93741;93742;93743;93744;93745;93746;93747;93748;93749;93750;93751;93752;93753;93754;93755;93756;93757;93758;93759;93760;93761	93737			38	
EFNEDGALAVLQQFK	1	Unmodified	1707.8468	0.84680041	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	8	8	2							2	5	5	6	100.52	100.41	2;3	6.7833E-72	88864	160511_QHF_FH_JSI10i_2	280.17	243.75			0.85229	0.93252	24.999	17	5	Median	1.26	1.0484	2.7055	2	1	Median	0.84969	1.0284	12.113	5	2	Median	0.98273	0.93252	31.683	5	1	Median	0.79602	0.89195	26.361	5	1	Median	1868700000	1015900000	852830000	178260000	86704000	91558000	613370000	308350000	305020000	490320000	279140000	211180000	586790000	341720000	245070000	11292	423	10695	69424;69425;69426;69427;69428;69429;69430;69431;69432;69433;69434;69435;69436;69437;69438;69439;69440;69441	93762;93763;93764;93765;93766;93767;93768;93769;93770;93771;93772;93773;93774;93775;93776;93777;93778;93779;93780;93781;93782;93783;93784;93785;93786;93787;93788;93789;93790	93788			29	
EFNEEGALSVLQQFK	1	Unmodified	1737.8574	0.85736509	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	99.137	98.966	2;3	4.7503E-27	86836	160511_QHF_FH_JSI11i_2	148.68	124.39			1.009	1.0285	53.388	4	2	Median	0.45171	0.37961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1765	1.1502	7.6453	2	1	Median	0.899	0.97076	NaN	1	1	Median	88796000	50925000	37871000	22985000	16425000	6560100	0	0	0	48157000	24889000	23268000	17654000	9610300	8043400	11293	326	10696	69442;69443;69444;69445;69446;69447;69448	93791;93792;93793;93794;93795;93796;93797;93798;93799	93798			9	
EFNFLDYLK	1	Unmodified	1187.5863	0.58627561	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				54.815	45.603	3	0.057756	24030	160513_QHF_FH_JSI9Kac_6	11.164	4.2761			1.0826	0.932	NaN	1	0	Median	1.0826	0.932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44977000	23934000	21044000	44977000	23934000	21044000	0	0	0	0	0	0	0	0	0	11294	5447	10697	69449	93800	93800			1	
EFNGQHFILEEAITGDFALVK	1	Unmodified	2377.1954	0.19541193	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	93.557	84.329	3	0.00037485	45708	160513_QHF_FH_JSI12Kac_6	62.966	55.162			1.0831	1.0821	17.74	3	0	Plateau	1.0742	0.91101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80295	0.80361	NaN	1	0	Median	1.0831	1.1405	NaN	1	0	Median	162120000	82374000	79741000	56782000	19884000	36897000	0	0	0	36976000	23642000	13334000	68358000	38848000	29510000	11295	1865	10698	69450;69451;69452	93801	93801			0	
EFNKYDTDGSK	2	Acetyl (K)	1344.5834	0.58337508	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	36.862	28.103	2	8.071E-07	15640	160513_QHF_FH_JSI10Kac_3	108.35	92.467			0.73579	0.51687	27.463	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73579	0.86932	NaN	1	0	Median	0.52362	0.51687	NaN	1	0	Median	0.73867	0.78144	NaN	1	0	Median	36560000	19567000	16993000	0	0	0	10266000	5766000	4499700	15316000	8684300	6631300	10978000	5116500	5861700	11296	1939	10699	69453;69454;69455	93802;93803;93804;93805	93805	1948;1949		4	
EFNLYFYHFSR	0	Unmodified	1521.7041	0.70409934	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	3	2	1	80.266	72.605	2;3	1.5574E-14	39312	160513_QHF_FH_JSI11Kac_6	171.92	148.55			1.0069	1.0371	10.977	7	2	Median	1.2087	1.0371	NaN	1	0	Median	0.76556	0.90214	11.441	3	2	Plateau	1.1209	1.0856	16.431	2	0	Median	1.0657	1.1124	NaN	1	0	Median	4560600000	2377100000	2183500000	543840000	243940000	299890000	2800000000	1532000000	1268000000	643240000	303540000	339700000	573560000	297650000	275910000	11297	3430	10700	69456;69457;69458;69459;69460;69461;69462	93806;93807;93808;93809;93810;93811;93812;93813;93814	93808			8	
EFNPTKPLLSVNK	2	Unmodified	1485.8191	0.81912909	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	56.757	55.642	3	0.030543	47806	160511_QHF_FH_JSI12i_3	33.008	21.535			1.0641	1.132	6.5804	3	1	Median	1.3998	1.132	NaN	1	1	Median	1.0558	1.2243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.0743	NaN	1	0	Median	129370000	65183000	64182000	24085000	12435000	11650000	42618000	19897000	22721000	0	0	0	62663000	32851000	29811000	11298	3801	10701	69463;69464;69465	93815;93816;93817;93818	93818			4	
EFNSYGSR	0	Unmodified	958.41446	0.41445926	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	14.602	14.004	2	0.0035516	11116	160511_QHF_FH_JSI11i_2	71.692	66.837			1.0787	0.99513	9.2869	3	0	Plateau	1.1509	0.99798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9973	0.99513	NaN	1	0	Median	1.0787	1.1704	NaN	1	0	Median	212590000	104810000	107770000	56416000	22181000	34235000	0	0	0	99867000	50916000	48951000	56303000	31714000	24588000	11299	1194	10702	69466;69467;69468	93819;93820	93819			2	
EFPDQHH	0	Unmodified	908.37768	0.37767982	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	9.6781	9.2112	2	0.0054228	6796	160511_QHF_FH_JSI11i_2	100.74	93.071			0.82077	0.81973	32.558	4	1	Median	1.1846	1.0152	NaN	1	0	Median	0.47604	0.57768	NaN	1	0	Median	0.65806	0.66188	NaN	1	1	Median	1.0237	1.1321	NaN	1	0	Median	395290000	232660000	162620000	88851000	51949000	36901000	73131000	54300000	18832000	132610000	71237000	61373000	100690000	55178000	45517000	11300	645	10703	69469;69470;69471;69472	93821;93822;93823	93822			3	
EFPDVLECTVSHAVEK	1	Unmodified	1858.8771	0.87711426	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	78.672	77.821	3	9.4755E-05	69202	160511_QHF_FH_JSI10i_2	79.393	68.758			0.85595	0.90942	15.236	3	3	Median	NaN	NaN	NaN	0	0	Median	0.7565	0.90942	NaN	1	1	Median	0.85595	0.85304	NaN	1	1	Median	1.0339	1.14	NaN	1	1	Median	108420000	57575000	50848000	0	0	0	25538000	13223000	12315000	52113000	28288000	23825000	30771000	16064000	14708000	11301	1623	10704	69473;69474;69475	93824;93825;93826	93826			3	
EFPFDVQPVPLRR	0	Unmodified	1598.8569	0.85691158	3986	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			78.665	77.608	3	0.0012505	63811	160511_QHF_FH_JSI9i_3	53.967	34.128			0.62191	0.63426	41.489	2	1	Median	1.0239	0.8505	NaN	1	0	Median	0.37776	0.473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27585000	15030000	12555000	16446000	6858700	9587700	11139000	8171200	2967700	0	0	0	0	0	0	11302	3986	10705	69476;69477	93827;93828	93827			2	
EFPGFLENQK	1	Unmodified	1207.5873	0.58733824	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	6.58	5	4	4				2	5	3	5	5	5	8	66.718	61.77	2	2.559E-11	53261	160511_QHF_FH_JSI12i_2	151.44	123.04			0.98683	1.0155	26.749	23	7	Median	1.103	0.91187	22.168	5	3	Median	0.90179	1.0797	12.551	5	0	Median	1.1328	1.1608	16.58	5	1	Median	0.95032	1.0414	37.882	8	3	Median	13301000000	6467300000	6834100000	2608000000	1195000000	1413000000	3032500000	1682400000	1350100000	4216700000	1951000000	2265700000	3444200000	1638900000	1805300000	11303	1923	10706	69478;69479;69480;69481;69482;69483;69484;69485;69486;69487;69488;69489;69490;69491;69492;69493;69494;69495;69496;69497;69498;69499;69500	93829;93830;93831;93832;93833;93834;93835;93836;93837;93838;93839;93840;93841;93842;93843;93844;93845;93846;93847;93848;93849;93850;93851;93852;93853;93854;93855;93856;93857;93858;93859;93860;93861;93862;93863;93864;93865;93866;93867;93868;93869;93870;93871;93872;93873;93874;93875;93876;93877;93878;93879;93880;93881;93882;93883;93884;93885	93839			57	
EFPGFLENQKDPLAVDK	2	Unmodified	1945.9785	0.97854286	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	78.875	78.174	3	1.7757E-06	67752	160511_QHF_FH_JSI12i_3	111.33	83.829			0.78508	0.79407	31.244	5	0	Median	0.49032	0.40999	NaN	1	0	Median	0.62652	0.77482	NaN	1	0	Median	0.78508	0.79407	NaN	1	0	Median	0.8111	0.85478	0.23413	2	0	Median	482500000	247870000	234630000	64198000	42698000	21500000	70222000	39316000	30906000	27338000	14637000	12702000	320740000	151220000	169520000	11304	1923	10707	69501;69502;69503;69504;69505	93886;93887;93888;93889;93890;93891	93889			6	
EFPGLAGVK	1	Unmodified	916.50182	0.5018177	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.02	4	4	3				1	4		4	4	3	5	57.385	53.41	2	0.00063171	46889	160511_QHF_FH_JSI9i_2	77.058	38.82			1.024	1.022	17.142	16	1	Median	0.99028	0.89926	8.9722	4	1	Linear	0.68708	0.83599	14.774	4	0	Median	1.2173	1.2491	3.6551	3	0	Plateau	1.0081	1.0625	11.407	5	0	Median	2462400000	1286100000	1176400000	414120000	207860000	206270000	630900000	390320000	240580000	794020000	390900000	403120000	623380000	296990000	326390000	11305	3603	10708	69506;69507;69508;69509;69510;69511;69512;69513;69514;69515;69516;69517;69518;69519;69520;69521	93892;93893;93894;93895;93896;93897;93898;93899;93900;93901;93902;93903;93904;93905;93906;93907;93908;93909;93910	93904			19	
EFPHLVDR	0	Unmodified	1011.5138	0.51377937	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		39.895	39.895	3	0.025099	35085	160511_QHF_FH_JSI11i_3	27.329	16.915			0.94307	0.87661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94307	0.87661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16353000	8060300	8293100	0	0	0	0	0	0	16353000	8060300	8293100	0	0	0	11306	2511	10709	69522	93911	93911			1	
EFPPGTPR	0	Unmodified	899.45012	0.45011648	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.949	27.58	2	0.023547	23071	160511_QHF_FH_JSI11i_2	54.157	29.525			1.8791	1.8891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8791	1.8891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	116930000	36911000	80020000	0	0	0	0	0	0	116930000	36911000	80020000	0	0	0	11307	2094	10710	69523	93912	93912			1	
EFPTVPLVK	1	Unmodified	1028.5906	0.59063271	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	69.866	69.163	2	0.0026916	60973	160511_QHF_FH_JSI9i_2	73.248	44.099			0.69849	0.7227	84.573	4	3	Median	2.8645	2.4544	NaN	1	1	Median	0.27992	0.32159	NaN	1	1	Median	0.64659	0.62978	NaN	1	0	Median	0.75455	0.82933	NaN	1	1	Median	112970000	55959000	57013000	21005000	6207400	14798000	17387000	13974000	3412900	14305000	8049000	6256200	60275000	27728000	32546000	11308	2772	10711	69524;69525;69526;69527;69528	93913;93914;93915;93916;93917	93916			5	
EFPVYLWQPFFR	0	Unmodified	1627.8187	0.81873516	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			2						2			2	2	99.816	95.106	2	6.6096E-13	48060	160513_QHF_FH_JSI12Kac_6	131.72	106.93			1.3832	1.3191	25.923	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3832	1.3191	6.1931	2	1	Median	1.366	1.4201	43.855	2	0	Median	296180000	118180000	178000000	0	0	0	0	0	0	141600000	56741000	84858000	154580000	61441000	93138000	11309	4572	10712	69529;69530;69531;69532	93918;93919;93920	93920			2	
EFQATAR	0	Unmodified	821.40317	0.40316629	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.41	4	3					3	2		2	2	4	4	12.659	9.3253	2	0.0033738	6008	160513_QHF_FH_JSI12Kac_4	98.418	55.699			0.90824	0.91325	22.548	11	1	Median	0.96374	0.81869	15.458	2	0	Median	0.86071	1.0419	8.049	2	0	Median	0.88244	0.89361	16.798	4	0	Median	1.0433	1.0994	38.919	3	1	Median	1836100000	927030000	909120000	433990000	196180000	237810000	523870000	270820000	253040000	661270000	353820000	307450000	217020000	106200000	110820000	11310	997	10713	69533;69534;69535;69536;69537;69538;69539;69540;69541;69542;69543;69544	93921;93922;93923;93924;93925;93926;93927;93928;93929;93930	93927			10	
EFQDAGEQVVSSPADVAEK	1	Unmodified	2004.9276	0.9276295	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	54.542	53.88	2;3	7.2787E-161	48637	160511_QHF_FH_JSI10i_1	368.52	338.72			1.1012	1.0897	16.429	8	1	Median	1.0576	0.86401	5.7984	2	1	Median	1.0054	1.175	13.158	2	0	Median	1.1599	1.1205	6.3227	2	0	Median	1.1794	1.2196	13.56	2	0	Median	1099900000	496670000	603240000	221840000	96234000	125610000	296040000	144050000	151990000	326500000	140670000	185830000	255520000	115720000	139800000	11311	1380	10714	69545;69546;69547;69548;69549;69550;69551;69552;69553	93931;93932;93933;93934;93935;93936;93937;93938;93939;93940;93941;93942;93943;93944;93945;93946;93947;93948	93942			17	
EFQLFQGVTR	0	Unmodified	1223.6299	0.62987176	5273	Q9UET6	FTSJ1	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	69.804	69.605	2	3.714E-08	62006	160511_QHF_FH_JSI11i_3	125.56	90.339			1.0061	1.0031	38.745	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2205	1.1697	NaN	1	0	Median	0.74591	0.75023	41.08	2	2	Median	124140000	58337000	65806000	0	0	0	0	0	0	54412000	19374000	35038000	69732000	38963000	30768000	11312	5273	10715	69554;69555;69556	93949;93950;93951;93952	93950			4	
EFQLTEENTK	1	Unmodified	1237.5826	0.5826468	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	35.345	34.929	2	0.005716	31241	160511_QHF_FH_JSI11i_1	63.216	36.702			1.8545	1.8816	13.046	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1335	2.0634	NaN	1	1	Median	1.612	1.7158	NaN	1	1	Median	122150000	30722000	91429000	0	0	0	0	0	0	61251000	12900000	48351000	60899000	17822000	43078000	11313	5053	10716	69557;69558	93953;93954	93953			2	
EFQQYLPVVMGPLMK	1	Unmodified	1778.9099	0.90993471	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	2	3	3	101.43	101.31	2;3	2.0554E-44	89861	160511_QHF_FH_JSI10i_2	180.97	157.12			1.0234	0.97284	32.581	9	3	Median	1.1574	0.98863	11.899	2	0	Median	0.78505	0.96837	NaN	1	0	Median	0.95735	0.97284	12.127	3	2	Plateau	1.0234	1.1541	40.746	3	1	Plateau	1811400000	933250000	878190000	387120000	189430000	197680000	186610000	100940000	85670000	745880000	406960000	338920000	491830000	235910000	255920000	11314	127	10717	69559;69560;69561;69562;69563;69564;69565;69566;69567;69568	93955;93956;93957;93958;93959;93960;93961;93962;93963;93964;93965	93965			11	
EFQQYLPVVMGPLMK	1	Oxidation (M)	1794.9048	0.90484933	127	O00410	IPO5	Importin-5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2	0		6								2	3	1		96.085	95.862	2;3	0.0085654	84302	160511_QHF_FH_JSI9i_2	48.177	36.657			0.93161	0.8973	52.399	6	6	Median	0.6386	0.56996	75.633	2	2	Median	1.0701	1.2428	45.263	3	3	Median	0.81102	0.8275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59789000	32910000	26879000	12907000	8394500	4512500	26439000	12123000	14316000	20443000	12393000	8050000	0	0	0	11315	127	10717	69569;69570;69571;69572;69573;69574	93966;93967;93968;93969;93970;93971	93967		55	6	
EFQSDGSK	1	Unmodified	896.38758	0.3875758	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	6.5289	6.2369	2	0.0050907	4218	160511_QHF_FH_JSI12i_1	74.486	52.804			0.27318	0.302	57.222	2	2	Median	NaN	NaN	NaN	0	0	Median	0.38014	0.45261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19632	0.2015	NaN	1	1	Median	107850000	76449000	31404000	0	0	0	60734000	38256000	22479000	0	0	0	47119000	38193000	8925900	11316	3675	10718	69575;69576	93972;93973	93972			2	
EFQSPDEEMKK	2	Unmodified	1366.6075	0.60748134	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	25.705	24.688	2;3	0.001825	20648	160511_QHF_FH_JSI12i_2	71.349	53.913			1.3466	1.1546	NaN	1	0	Median	1.3466	1.1546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59549000	25265000	34284000	59549000	25265000	34284000	0	0	0	0	0	0	0	0	0	11317	542	10719	69577;69578	93974;93975	93974			2	
EFRDYPPLR	0	Unmodified	1191.6037	0.60365701	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	3	1		39.085	37.929	2;3	0.00025201	33503	160511_QHF_FH_JSI10i_2	68.657	53.978			0.97914	1.066	27.768	6	1	Median	1.4206	1.1842	6.2604	2	0	Median	0.88305	1.0274	32.557	3	1	Plateau	1.0742	1.1061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1278200000	648250000	629930000	406430000	144700000	261730000	778230000	460040000	318190000	93522000	43512000	50010000	0	0	0	11318	5141	10720	69579;69580;69581;69582;69583;69584	93976;93977;93978;93979;93980;93981;93982;93983;93984;93985;93986	93985			11	
EFREEESLVEQFVFEALVIYMESLALAHADEK	1	Unmodified	3770.8389	0.83894442	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			104.75	99.029	4	2.3928E-67	58640	160513_QHF_FH_JSI10Kac_6	186.01	176.51			0.92577	1.1014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92577	1.1014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213330000	102260000	111060000	0	0	0	213330000	102260000	111060000	0	0	0	0	0	0	11319	2094	10721	69585	93987	93987			1	
EFRFEPSSQMIEVQEGQNLK	1	Unmodified	2395.1478	0.14780981	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	72.979	72.311	3	4.1581E-11	64567	160511_QHF_FH_JSI11i_3	128.74	115.81			1.0662	1.0202	10.975	5	0	Median	1.0936	0.93939	NaN	1	0	Median	0.96192	1.1337	14.915	2	0	Median	1.0662	1.0083	NaN	1	0	Median	1.057	1.0648	NaN	1	0	Median	257780000	128000000	129770000	28679000	10795000	17884000	67747000	35420000	32327000	125030000	65048000	59978000	36326000	16740000	19585000	11320	2638;2895	10722	69586;69587;69588;69589;69590	93988;93989;93990;93991;93992;93993;93994	93990			7	
EFRPEDQPWLLR	0	Unmodified	1584.8049	0.80487601	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.317	68.02	3	0.00069019	58867	160511_QHF_FH_JSI12i_3	47.712	40.819			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11321	1432	10723	69591	93995	93995			1	
EFSFEAWNAK	1	Unmodified	1227.556	0.55603812	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	69.581	68.688	2	5.5871E-05	60563	160511_QHF_FH_JSI9i_2	91.867	83.004			0.98714	0.90864	11.27	4	0	Median	1.0108	0.87022	NaN	1	0	Median	0.71806	0.87622	NaN	1	0	Median	0.96404	0.94226	NaN	1	0	Median	1.0312	1.1089	NaN	1	0	Median	169390000	93655000	75732000	38522000	18331000	20191000	38005000	24098000	13907000	49226000	28198000	21028000	43634000	23027000	20607000	11322	2087	10724	69592;69593;69594;69595;69596	93996;93997;93998;93999;94000;94001	93997			6	
EFSFTLK	1	Unmodified	870.44872	0.4487195	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	61.787	60.892	2	0.017903	52231	160511_QHF_FH_JSI12i_2	60.76	46.347			1.2346	1.3041	8.0693	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2346	1.5058	NaN	1	0	Median	1.3019	1.3041	NaN	1	0	Median	1.171	1.3153	NaN	1	0	Median	94285000	48963000	45322000	0	0	0	23348000	12003000	11344000	40783000	23332000	17451000	30155000	13628000	16527000	11323	1669	10725	69597;69598;69599	94002	94002			1	
EFSGHQGQINDMAFSPDGR	0	Unmodified	2091.9069	0.90685126	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	51.485	50.529	3	1.4405E-05	43642	160511_QHF_FH_JSI11i_2	76.176	67.888			1.0378	1.04	12.614	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0622	1.3199	NaN	1	1	Median	1.0378	1.04	NaN	1	0	Median	1.0294	1.0906	NaN	1	0	Median	83773000	43778000	39995000	0	0	0	19593000	12041000	7551600	40769000	20522000	20248000	23411000	11216000	12196000	11324	3676	10726	69600;69601;69602;69603	94003;94004;94005;94006;94007;94008	94005			6	
EFSGNPIK	1	Unmodified	890.44978	0.44978213	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.83	4	4	3				3	2		3	4	5	4	29.632	26.128	2	0.00038974	22936	160511_QHF_FH_JSI9i_1	109.86	70.32			0.7924	0.73318	38.216	16	2	Median	0.77259	0.64163	23.582	3	0	Median	0.57094	0.69154	11.95	4	1	Median	1.2359	1.2913	52.515	5	1	Median	0.88317	0.97161	21.001	4	0	Median	6792700000	3191900000	3600900000	1377000000	577500000	799550000	1601500000	872390000	729090000	2009900000	829810000	1180100000	1804300000	912180000	892080000	11325	1442	10727	69604;69605;69606;69607;69608;69609;69610;69611;69612;69613;69614;69615;69616;69617;69618;69619	94009;94010;94011;94012;94013;94014;94015;94016;94017;94018;94019;94020;94021;94022;94023;94024;94025;94026;94027;94028;94029;94030;94031;94032	94024			24	
EFSGYVESGLK	1	Unmodified	1214.5819	0.58191851	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		49.9	49.483	2	0.00025223	44769	160511_QHF_FH_JSI11i_1	85.355	68.815			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11326	1170	10728	69620;69621	94033;94034	94033			2	
EFSHIAFLTIK	1	Unmodified	1304.7129	0.71287311	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.85		7	8						5	5	6	3	6	77.427	74.7	2;3	4.8611E-12	39377	160513_QHF_FH_JSI10Kac_6	146.11	107.81			1.045	1.0957	25.505	19	9	Median	1.4637	1.2382	27.307	5	4	Median	0.80861	0.95494	25.87	6	2	Median	1.0837	1.0221	14.062	3	1	Plateau	1.045	1.0957	33.778	5	2	Median	2835500000	1388900000	1446500000	512760000	213260000	299500000	1360500000	687540000	673000000	418400000	182720000	235680000	543760000	305390000	238370000	11327	975	10729	69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636;69637;69638;69639;69640;69641	94035;94036;94037;94038;94039;94040;94041;94042;94043;94044;94045;94046;94047;94048;94049;94050;94051;94052;94053;94054;94055;94056;94057;94058;94059;94060;94061;94062;94063;94064;94065;94066;94067;94068	94067			33	
EFSIDVGYER	0	Unmodified	1213.5615	0.56151742	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.25	0.433	3	1									2		2	59.478	58.784	2	0.0003122	50193	160511_QHF_FH_JSI12i_2	90.629	82.586			0.78453	0.88238	15.051	4	4	Median	NaN	NaN	NaN	0	0	Median	0.78044	0.88238	12.058	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82831	0.86377	23.013	2	2	Median	141110000	74679000	66428000	0	0	0	68925000	38388000	30537000	0	0	0	72182000	36292000	35890000	11328	1939	10730	69642;69643;69644;69645	94069;94070;94071;94072	94069			4	
EFSITDVVPYPISLR	0	Unmodified	1734.9192	0.91923707	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.59	101.48	2	5.9483E-09	90039	160511_QHF_FH_JSI10i_2	182.08	148.86			0.66642	0.71335	14.563	4	4	Median	0.67771	0.57666	NaN	1	1	Median	0.62894	0.77719	NaN	1	1	Median	0.65531	0.65476	NaN	1	1	Median	0.69998	0.77839	NaN	1	1	Median	804230000	500950000	303280000	168710000	100770000	67939000	185380000	120550000	64833000	239040000	153350000	85684000	211100000	126270000	84823000	11329	1417	10731	69646;69647;69648;69649	94073;94074;94075;94076	94076			4	
EFSITEFSEGAK	1	Unmodified	1343.6245	0.62451161	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									1	1	2	67.662	67.001	2	1.5797E-05	60798	160511_QHF_FH_JSI10i_1	113.44	101.73			1.2152	1.2789	16.049	4	1	Median	NaN	NaN	NaN	0	0	Median	0.91722	1.0731	NaN	1	0	Median	1.2279	1.1907	NaN	1	0	Median	1.3486	1.458	8.4269	2	1	Median	157180000	67980000	89198000	0	0	0	41817000	24123000	17693000	40647000	16546000	24101000	74714000	27311000	47403000	11330	3797	10732	69650;69651;69652;69653	94077;94078	94078			2	
EFSIYMTK	1	Unmodified	1017.4841	0.48411873	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.59	3	4	3				2	4	3	4	6	5	4	60.085	54.511	2	0.00055359	48160	160511_QHF_FH_JSI10i_2	104.44	70.184			1.104	1.1315	31.307	18	4	Median	1.4255	1.2178	25.256	4	1	Median	0.83948	1.0196	37.839	6	2	Median	1.0976	1.0836	34.347	4	1	Median	1.0278	1.126	23.873	4	0	Median	2784100000	1553200000	1230800000	459560000	216100000	243460000	766890000	432810000	334080000	858700000	536290000	322410000	698910000	368040000	330880000	11331	773	10733	69654;69655;69656;69657;69658;69659;69660;69661;69662;69663;69664;69665;69666;69667;69668;69669;69670;69671;69672	94079;94080;94081;94082;94083;94084;94085;94086;94087;94088;94089;94090;94091;94092;94093;94094;94095;94096;94097;94098;94099;94100;94101;94102	94095			24	
EFSIYMTK	1	Oxidation (M)	1033.479	0.47903335	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		14.8	0.687							2	3	1	2	2	2		51.965	41.617	2	0.0064205	23309	160513_QHF_FH_JSI10Kac_4	71.692	66.033			1.2146	1.129	16.778	6	0	Median	1.3286	1.131	14.35	2	0	Median	0.82693	0.974	8.9214	2	0	Median	1.3501	1.3335	11.582	2	0	Median	NaN	NaN	NaN	0	0	Median	80874000	41137000	39737000	21292000	9940000	11352000	27313000	15401000	11912000	32269000	15796000	16473000	0	0	0	11332	773	10733	69673;69674;69675;69676;69677;69678	94103;94104;94105;94106;94107;94108;94109	94104		280	7	
EFSIYMTKDGR	1	Acetyl (K);Oxidation (M)	1403.6391	0.63911582	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			1	1	3	60.141	49.405	2	0.00045991	27725	160513_QHF_FH_JSI12Kac_4	85.533	81.082			0.78824	0.84814	106	4	1	Median	NaN	NaN	NaN	0	0	Median	0.68769	0.80384	NaN	1	0	Median	0.9035	0.89489	NaN	1	0	Median	0.32448	0.35124	160.87	2	1	Median	21971000	11634000	10337000	0	0	0	5286800	2811400	2475400	3083600	1644900	1438700	13601000	7178200	6422700	11333	773	10734	69679;69680;69681;69682;69683	94110;94111;94112;94113	94111	382	280	3	
EFSIYMTKDGR	1	Acetyl (K)	1387.6442	0.6442012	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.349	61.583	2	0.015702	32954	160513_QHF_FH_JSI11Kac_5	61.161	50.93			5.0325	4.6561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0325	4.6561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1024100	110780	913370	0	0	0	0	0	0	1024100	110780	913370	0	0	0	11334	773	10734	69684	94114	94114	382		1	
EFSKELTPVAK	2	Acetyl (K)	1289.6867	0.68671794	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	63.214	52.732	2	8.8854E-05	29569	160513_QHF_FH_JSI11Kac_4	97.456	80.785			0.81591	0.91066	34.416	4	0	Median	NaN	NaN	NaN	0	0	Median	0.54985	0.64244	45.68	2	0	Median	0.94556	0.94964	NaN	1	0	Median	0.86224	0.93455	NaN	1	0	Median	13241000	7451400	5790000	0	0	0	5497300	3704700	1792600	3536200	1767200	1769000	4207900	1979500	2228400	11335	941	10735	69685;69686;69687;69688	94115;94116;94117;94118;94119	94117	705		5	
EFSPFGSITSAK	1	Unmodified	1269.6241	0.62411768	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.8	3	4	3				1	3		3	3	4	4	68.26	64.622	2	8.9629E-06	34095	160513_QHF_FH_JSI11Kac_5	102.52	87.857			1.4573	1.3488	66.729	14	7	Median	1.7425	1.4894	15.037	3	1	Median	0.40935	0.47483	120.68	3	1	Median	1.2447	1.2489	69.095	4	1	Median	1.249	1.2968	40.717	4	4	Median	3152800000	1090200000	2062500000	534280000	178820000	355460000	236690000	130170000	106520000	1137900000	400530000	737340000	1243900000	380710000	863210000	11336	2385	10736	69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700;69701;69702	94120;94121;94122;94123;94124;94125;94126;94127;94128;94129;94130;94131;94132;94133	94130			14	
EFSPFGTITSAK	1	Unmodified	1283.6398	0.63976774	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.53	6	4	2				3	5	1	6	4	5	6	70.384	65.121	2	1.1624E-09	56401	160511_QHF_FH_JSI12i_2	118.4	98.617			0.87626	0.83283	13.769	17	4	Median	1.0189	0.84725	10.095	4	2	Median	0.73219	0.85035	14.367	4	1	Median	0.88973	0.83283	11.935	5	0	Median	0.85199	0.9067	22.519	4	1	Median	6480000000	3158300000	3321800000	1559000000	706960000	852070000	860660000	447360000	413300000	2467500000	1196000000	1271500000	1592800000	807930000	784870000	11337	1009	10737	69703;69704;69705;69706;69707;69708;69709;69710;69711;69712;69713;69714;69715;69716;69717;69718;69719;69720;69721;69722;69723	94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144;94145;94146;94147;94148;94149;94150;94151;94152;94153;94154;94155;94156;94157;94158;94159;94160;94161	94140			27	
EFSQSFDAAMK	1	Unmodified	1259.5492	0.54923818	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				49.911	48.857	2	0.00012102	42830	160511_QHF_FH_JSI9i_2	84.817	74.531			0.89734	0.77224	NaN	1	0	Median	0.89734	0.77224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38367000	23574000	14793000	38367000	23574000	14793000	0	0	0	0	0	0	0	0	0	11338	5663	10738	69724	94162	94162			1	
EFSQTLENEK	1	Unmodified	1223.567	0.56699673	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	28.39	28.006	2	0.0092299	25072	160511_QHF_FH_JSI12i_1	58.955	39.441			0.90917	0.91269	52.627	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3558	1.3241	NaN	1	1	Median	0.60968	0.62908	NaN	1	1	Median	95985000	39366000	56619000	0	0	0	0	0	0	54512000	20709000	33803000	41473000	18657000	22816000	11339	2574	10739	69725;69726	94163;94164	94164			2	
EFSSEAR	0	Unmodified	824.36645	0.36644643	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	9.1108	7.9114	2	3.3056E-05	4456	160513_QHF_FH_JSI11Kac_4	128.57	99.228			1.0855	1.0534	16.219	9	0	Median	1.2759	1.0664	7.2897	2	0	Median	0.98353	1.1907	17.675	2	0	Median	1.0855	1.0534	16.766	3	0	Median	0.86	0.9229	20.003	2	0	Median	3439200000	1710700000	1728500000	739460000	332530000	406930000	994510000	513260000	481260000	921480000	455570000	465910000	783760000	409330000	374430000	11340	2328	10740	69727;69728;69729;69730;69731;69732;69733;69734;69735	94165;94166;94167;94168;94169;94170;94171;94172;94173;94174;94175;94176;94177;94178;94179	94171			15	
EFSYLDEEEK	1	Unmodified	1287.5507	0.55067797	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	47.252	46.463	2	1.2959E-06	41881	160511_QHF_FH_JSI11i_1	128.6	106.52			1.0537	1.2519	45.858	5	4	Median	1.3272	1.0976	48.765	2	2	Median	1.0537	1.2519	NaN	1	0	Median	1.6362	1.614	NaN	1	1	Median	0.54977	0.56467	NaN	1	1	Median	312070000	131290000	180780000	81822000	29649000	52174000	61051000	20979000	40072000	110940000	47184000	63752000	58259000	33480000	24779000	11341	4282	10741	69736;69737;69738;69739;69740	94180;94181;94182;94183;94184	94180			5	
EFTAQNLGK	1	Unmodified	1006.5084	0.50835964	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	32.605	29.557	2	3.7308E-06	25861	160511_QHF_FH_JSI10i_2	121.85	89.914			0.70693	0.69902	40.688	12	1	Median	0.79309	0.64443	19.085	3	1	Median	0.63014	0.75784	30.334	3	0	Median	0.52568	0.50841	58.536	3	0	Median	0.84062	0.88837	47.423	3	0	Median	2996700000	1642800000	1354000000	581930000	273550000	308380000	777510000	422510000	354990000	836520000	491850000	344670000	800800000	454870000	345920000	11342	283	10742	69741;69742;69743;69744;69745;69746;69747;69748;69749;69750;69751;69752	94185;94186;94187;94188;94189;94190;94191;94192;94193;94194;94195;94196;94197;94198;94199;94200;94201;94202;94203;94204	94203			19	
EFTAWYSDMETPLK	1	Unmodified	1716.7705	0.77052392	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	86.527	85.869	2	6.3045E-05	75517	160511_QHF_FH_JSI11i_2	151.98	140.76			0.80355	0.85337	28.548	4	4	Median	0.915	0.79066	48.329	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87732	0.89755	NaN	1	1	Median	0.73599	0.81137	NaN	1	1	Median	58938000	32050000	26888000	25981000	15483000	10498000	0	0	0	20873000	10873000	10000000	12084000	5694600	6389900	11343	682	10743	69753;69754;69755;69756	94205;94206;94207;94208	94208			4	
EFTDHQETQAELQK	1	Unmodified	1702.7798	0.77984305	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	26.235	24.959	3	0.0017053	20860	160511_QHF_FH_JSI12i_2	52.527	42.246			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11344	4986	10744	69757	94209	94209			1	
EFTEAVEAK	1	Unmodified	1022.492	0.49204087	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	5.89	4	5	1			5	4			4	7	4	4	30.401	25.224	2	6.0526E-11	15714	160513_QHF_FH_JSI11Kac_3	149.57	93.562			1.093	1.3101	61.091	19	13	Median	1.4237	1.2134	42.624	4	2	Median	1.093	1.3149	83.58	7	6	Median	1.5172	1.5	53.416	4	3	Median	0.92926	1.0031	57.792	4	2	Median	9113700000	4804800000	4308900000	2116100000	995360000	1120800000	2607700000	1634800000	972960000	1975600000	937580000	1038000000	2414200000	1237100000	1177100000	11345	1424	10745	69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768;69769;69770;69771;69772;69773;69774;69775;69776	94210;94211;94212;94213;94214;94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230;94231;94232;94233;94234	94217			25	
EFTKLEEVLTNKK	3	Acetyl (K)	1619.877	0.8770379	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	80.058	71.406	3	2.0517E-05	38961	160513_QHF_FH_JSI11Kac_6	106.42	91.392			0.78371	0.84572	264.3	4	3	Median	NaN	NaN	NaN	0	0	Median	0.41214	0.48862	NaN	1	0	Median	1.4903	1.4638	NaN	1	1	Median	0.14687	0.15941	419.16	2	2	Median	156360000	99414000	56948000	0	0	0	62919000	40137000	22782000	59269000	41455000	17814000	34173000	17822000	16351000	11346	2093	10746	69777;69778;69779;69780;69781	94235;94236;94237;94238;94239	94236	2179		5	
EFTLEFSR	0	Unmodified	1027.4975	0.4974606	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	4.8	5.11		3	1					1		2	1	1	1	64.092	61.117	2	0.0027508	52426	160511_QHF_FH_JSI12i_2	77.732	58.255			0.86926	0.91537	18.88	5	1	Median	0.89508	0.74783	26.199	2	0	Median	0.77813	0.91537	NaN	1	1	Median	0.96633	0.98092	NaN	1	0	Median	0.86926	0.96751	NaN	1	0	Median	515140000	267950000	247180000	159240000	81118000	78119000	4161000	2265200	1895800	179670000	88713000	90955000	172070000	95854000	76215000	11347	1103	10747	69782;69783;69784;69785;69786	94240;94241;94242;94243	94241			4	
EFTMAEIEHFVDPSEK	1	Unmodified	1907.8611	0.86112984	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.824	95.502	3	5.7183E-05	82276	160511_QHF_FH_JSI12i_2	74.428	64.898			0.89882	0.93862	7.7062	4	0	Linear	1.1988	1.067	NaN	1	0	Median	0.86682	1.0523	NaN	1	0	Median	0.88067	0.9022	NaN	1	0	Median	0.91735	1.0299	NaN	1	0	Median	273480000	152360000	121130000	36549000	14721000	21828000	53817000	34318000	19498000	96291000	58790000	37501000	86823000	44526000	42297000	11348	1519	10748	69787;69788;69789;69790	94244;94245;94246;94247;94248;94249	94245			6	
EFTNQEAAEPK	1	Unmodified	1262.5779	0.57789577	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	1	3	21.386	18.589	2	1.0448E-47	15956	160511_QHF_FH_JSI10i_1	215.83	198.01			0.95563	0.97098	53.923	6	1	Median	1.1595	0.96325	NaN	1	0	Median	1.6247	1.8496	90.004	2	1	Median	1.0131	0.99387	NaN	1	0	Median	0.83007	0.88714	8.1919	2	0	Median	753960000	340840000	413120000	162240000	63034000	99209000	201150000	107210000	93937000	190160000	84192000	105960000	200410000	86398000	114020000	11349	2804	10749	69791;69792;69793;69794;69795;69796;69797	94250;94251;94252;94253;94254;94255;94256;94257;94258;94259;94260;94261	94255			12	
EFTNVYIK	1	Unmodified	1012.5229	0.52294707	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.5	4	4	3				3	1		5	4	4	2	48.693	45.153	2	0.0017165	39369	160511_QHF_FH_JSI9i_2	98.997	72.395			1.0611	1.1851	24.141	15	8	Median	1.4589	1.1851	29.955	5	3	Median	0.90374	1.0876	10.655	4	2	Median	1.369	1.3799	25.262	4	2	Median	1.1397	1.2553	20.594	2	1	Median	6096900000	2880900000	3216000000	1336700000	547700000	789050000	1687100000	942060000	745010000	1803800000	755010000	1048800000	1269200000	636080000	633150000	11350	2385;1009	10750	69798;69799;69800;69801;69802;69803;69804;69805;69806;69807;69808;69809;69810;69811;69812	94262;94263;94264;94265;94266;94267;94268;94269;94270;94271;94272;94273;94274;94275	94272			14	
EFTPYDYSQSDFK	1	Unmodified	1625.6886	0.68856843	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	60.628	59.983	2	3.8862E-07	53157	160511_QHF_FH_JSI9i_1	96.229	79.852			0.8294	0.82958	7.552	4	2	Median	0.90491	0.74463	NaN	1	1	Median	0.75604	0.89123	NaN	1	0	Median	0.87004	0.84443	NaN	1	1	Median	0.79065	0.81498	NaN	1	0	Median	331110000	171890000	159220000	67411000	36283000	31128000	83185000	38563000	44622000	81258000	39792000	41466000	99251000	57250000	42001000	11351	2175	10751	69813;69814;69815;69816;69817	94276;94277;94278;94279;94280;94281	94281			6	
EFTQGVKPDWTIAR	1	Unmodified	1646.8417	0.84165545	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		56.749	56.749	2;3	0.00029867	50315	160511_QHF_FH_JSI11i_3	129.71	116.31			1.0317	0.96163	19.558	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0317	0.96163	19.558	2	1	Median	NaN	NaN	NaN	0	0	Median	278330000	134060000	144270000	0	0	0	0	0	0	278330000	134060000	144270000	0	0	0	11352	3797	10752	69818;69819	94282;94283;94284	94283			3	
EFTSHALDSHILDYYENPAIK	1	Unmodified	2462.1754	0.17540477	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.862	77.595	3	6.7128E-11	67360	160511_QHF_FH_JSI12i_3	119.38	106.32			1.5104	1.5566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5104	1.5566	NaN	1	1	Median	25580000	5590600	19989000	0	0	0	0	0	0	0	0	0	25580000	5590600	19989000	11353	4460	10753	69820	94285	94285			1	
EFVEEFIWPAIQSSALYEDR	0	Unmodified	2428.1587	0.15869207	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	5	3	2	3	101.16	99.519	2;3	3.5801E-54	89701	160511_QHF_FH_JSI11i_2	271.08	251.34			0.92251	0.99145	21.581	12	2	Median	1.3956	1.2002	36.475	4	2	Median	0.87556	1.1103	14.998	3	0	Plateau	0.98623	1.0136	0.77846	2	0	Median	0.82995	0.93289	8.0807	3	0	Median	4537600000	2238200000	2299400000	1125900000	450240000	675660000	804590000	411390000	393200000	1451100000	749860000	701200000	1156000000	626750000	529300000	11354	779	10754	69821;69822;69823;69824;69825;69826;69827;69828;69829;69830;69831;69832;69833	94286;94287;94288;94289;94290;94291;94292;94293;94294;94295;94296	94293			10	
EFVGCFIDFPK	1	Unmodified	1357.6377	0.63765925	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	89.423	88.772	2	4.0343E-07	78041	160511_QHF_FH_JSI11i_2	117.7	106.55			0.87757	0.93324	22.933	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0015	1.2448	NaN	1	0	Median	0.87757	0.87401	NaN	1	0	Median	1.2455	1.3433	NaN	1	1	Median	112000000	57861000	54141000	0	0	0	27887000	15097000	12790000	51807000	30683000	21124000	32308000	12081000	20227000	11355	538	10755	69834;69835;69836	94297;94298;94299;94300;94301	94300			5	
EFVGQIMTMLNK	1	Unmodified	1409.7047	0.70469296	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	92.47	91.915	2	2.3855E-07	79739	160511_QHF_FH_JSI12i_3	151.15	139.28			0.76011	0.70463	33.429	2	1	Median	0.65039	0.55629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88835	0.89253	NaN	1	0	Median	95149000	47826000	47323000	7432700	4659000	2773700	0	0	0	0	0	0	87716000	43166000	44550000	11356	3262	10756	69837;69838	94302;94303;94304	94304			3	
EFVGQIMTMLNK	1	Oxidation (M)	1425.6996	0.69960758	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	73.766	73.476	2	0.0136	63758	160511_QHF_FH_JSI12i_3	54.198	35.886			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11357	3262	10756	69839	94305	94305		2234	1	
EFVHLAGK	1	Unmodified	899.4865	0.48650199	5364	Q9UKD1	GMEB2	Glucocorticoid modulatory element-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	28.514	28.484	3	0.0039067	24502	160511_QHF_FH_JSI11i_3	49.418	31.382			0.64813	0.63584	94.286	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2613	1.1639	NaN	1	0	Median	1.2132	1.241	133.24	2	1	Median	134820000	67922000	66899000	0	0	0	0	0	0	38749000	17290000	21459000	96072000	50633000	45440000	11358	5364	10757	69840;69841;69842	94306;94307;94308;94309;94310	94306			5	
EFVISDRK	1	Unmodified	992.5291	0.52909508	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.15		10	9						4	7	6	6	4	26.041	23.726	2;3	0.00014089	19622	160511_QHF_FH_JSI10i_3	125.81	88.72			1.0393	0.96672	68.315	20	6	Median	1.2773	1.1034	78.467	5	2	Median	1.1228	1.2981	87.48	6	2	Median	0.96362	0.92442	59.852	6	2	Median	0.72092	0.73117	4.2797	3	0	Plateau	5965800000	2897500000	3068300000	614550000	275260000	339290000	1613800000	841770000	772050000	2792800000	1302200000	1490600000	944640000	478270000	466370000	11359	2487	10758	69843;69844;69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859;69860;69861;69862;69863;69864;69865	94311;94312;94313;94314;94315;94316;94317;94318;94319;94320;94321;94322;94323;94324;94325;94326;94327;94328;94329;94330;94331;94332;94333;94334;94335;94336;94337;94338;94339	94319			28	
EFVITSLK	1	Unmodified	935.53278	0.53278348	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	59.931	59.183	2	0.0010799	50699	160511_QHF_FH_JSI12i_2	94.302	66.778			0.8572	0.92048	18.76	6	0	Median	1.2383	1.0694	NaN	1	0	Median	0.63736	0.74686	24.375	2	0	Median	0.91364	0.90129	13.003	2	0	Median	0.86727	0.95487	NaN	1	0	Median	267890000	140020000	127860000	43090000	21095000	21995000	80529000	47225000	33304000	84437000	44149000	40288000	59829000	27556000	32273000	11360	4868	10759	69866;69867;69868;69869;69870;69871	94340;94341;94342;94343;94344;94345;94346;94347	94340			8	
EFVKYSK	2	Acetyl (K)	941.48583	0.48583328	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	38.976	29.269	2	0.036319	17892	160513_QHF_FH_JSI11Kac_4	66.351	15.648			0.35996	0.37097	58.631	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57459	0.56154	NaN	1	0	Median	0.2255	0.24507	NaN	1	1	Median	43490000	27185000	16305000	0	0	0	0	0	0	34745000	20097000	14648000	8745100	7088300	1656800	11361	4445	10760	69872;69873	94348;94349	94348	3162		2	
EFVLLPAASELAHVK	1	Unmodified	1622.9032	0.90319307	4570	Q9BZL6	PRKD2	Serine/threonine-protein kinase D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.781	89.192	3	4.2807E-05	77111	160511_QHF_FH_JSI12i_2	90.707	82.53			0.8896	0.83819	41.138	4	2	Median	0.81127	0.68559	NaN	1	1	Median	0.40105	0.47723	NaN	1	1	Median	1.1556	1.1873	NaN	1	0	Median	0.97548	1.0248	NaN	1	0	Median	62499000	38303000	24196000	10133000	6726500	3406500	15364000	11062000	4302200	23083000	12374000	10709000	13919000	8140600	5778400	11362	4570	10761	69874;69875;69876;69877	94350;94351;94352;94353	94350			4	
EFVLPFLR	0	Unmodified	1019.5804	0.58040237	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	99.548	99.427	2	0.0016338	85836	160511_QHF_FH_JSI12i_3	86.866	57.293			1.0171	0.99824	9.9092	8	0	Median	1.2221	1.0619	17.053	2	0	Median	0.80885	0.95635	11.246	2	0	Median	1.108	1.0592	5.8172	2	0	Median	0.90446	0.95333	3.9435	2	0	Median	145620000	74075000	71541000	19279000	10013000	9266500	24694000	12740000	11953000	59203000	29934000	29269000	42440000	21388000	21052000	11363	1892	10762	69878;69879;69880;69881;69882;69883;69884;69885	94354;94355;94356;94357;94358;94359;94360;94361;94362;94363;94364;94365;94366;94367;94368	94368			15	
EFVMQEAQQNDDVSK	1	Unmodified	1766.7781	0.77812849	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.22	41.593	2	1.5343E-05	37798	160511_QHF_FH_JSI12i_1	119.39	106.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11219000	0	11219000	0	0	0	0	0	0	0	0	0	11219000	0	11219000	11364	3059	10763	69886	94369	94369			1	
EFVNLYSDYILNK	1	Unmodified	1616.8086	0.80862399	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.075	87.519	2	7.7829E-06	76995	160511_QHF_FH_JSI11i_2	130.01	97.508			1.352	1.2856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.352	1.2856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15446000	7574200	7871800	0	0	0	0	0	0	15446000	7574200	7871800	0	0	0	11365	2227	10764	69887	94370	94370			1	
EFVPGVK	1	Unmodified	774.42759	0.42759012	4341	Q9BPZ3	PAIP2	Polyadenylate-binding protein-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	36.15	35.512	2	0.020338	31558	160511_QHF_FH_JSI10i_1	57.102	23.364			0.91423	0.9653	34.081	8	2	Median	1.0527	0.903	NaN	1	0	Median	0.82791	0.99384	8.5842	2	0	Median	1.1878	1.1964	32.701	2	1	Median	0.86337	0.98146	56.15	3	1	Median	1771400000	940920000	830440000	296800000	159820000	136980000	479980000	274010000	205970000	570500000	270890000	299610000	424090000	236210000	187880000	11366	4341	10765	69888;69889;69890;69891;69892;69893;69894;69895	94371;94372;94373;94374;94375;94376;94377;94378;94379;94380	94375			10	
EFVPGVKYGNI	1	Acetyl (K)	1263.6499	0.6499385	4341	Q9BPZ3	PAIP2	Polyadenylate-binding protein-interacting protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.9	0.994				1	2	3	3				4	2	3	82.769	73.756	2	0.0012446	36602	160513_QHF_FH_JSI12Kac_3	83.429	74.012			0.90726	0.99051	21.045	9	0	Median	NaN	NaN	NaN	0	0	Median	0.90874	1.098	10.326	4	0	Median	0.75943	0.75683	2.73	2	0	Median	0.91322	0.99051	24.483	3	0	Median	109780000	61737000	48043000	0	0	0	36084000	19657000	16427000	14549000	7974600	6574400	59147000	34105000	25042000	11367	4341	10766	69896;69897;69898;69899;69900;69901;69902;69903;69904	94381;94382;94383;94384;94385;94386;94387;94388;94389;94390	94386	3138		10	
EFVSPSLTPPPAIAHPALPTIPERK	1	Unmodified	2664.4639	0.46392264	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			86.228	85.055	4	8.3331E-06	71136	160511_QHF_FH_JSI10i_3	57.293	55.838			0.60861	0.71665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60861	0.71665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17057000	11669000	5387900	0	0	0	17057000	11669000	5387900	0	0	0	0	0	0	11368	605	10767	69905	94391;94392	94392			2	
EFVTAFK	1	Unmodified	840.43815	0.43815481	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.67	0.471	1	2								1	2			45.263	44.448	2	0.019031	38851	160511_QHF_FH_JSI9i_2	58.981	42.054			0.83	0.71247	71.477	3	1	Median	0.83	0.71247	NaN	1	0	Median	0.99017	1.2116	91.316	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	266410000	135970000	130440000	109360000	51727000	57633000	157050000	84247000	72804000	0	0	0	0	0	0	11369	1034	10768	69906;69907;69908	94393;94394;94395;94396	94394			4	
EFVTAFKK	2	Unmodified	968.53312	0.53311783	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	33.922	33.308	2	0.0047717	27930	160511_QHF_FH_JSI12i_3	86.953	68.223			2.0125	2.3224	101.76	5	5	Median	3.4091	2.7998	NaN	1	1	Median	2.0125	2.3224	NaN	1	1	Median	2.706	2.5027	NaN	1	1	Median	0.56333	0.56786	120	2	2	Median	607190000	360350000	246840000	88589000	35748000	52841000	67415000	34378000	33037000	94116000	48829000	45286000	357070000	241390000	115670000	11370	1034	10769	69909;69910;69911;69912;69913	94397;94398;94399;94400;94401	94400			5	
EFVTHPK	1	Unmodified	856.4443	0.44430282	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		4								1		1	2	10.93	10.446	2;3	0.011696	8104	160511_QHF_FH_JSI12i_2	60.972	31.165			1.1124	0.9395	20.161	3	0	Median	1.1124	0.9395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3135	1.3025	NaN	1	0	Median	0.81672	0.90142	NaN	1	0	Median	429140000	201420000	227720000	92425000	45831000	46594000	0	0	0	208250000	95380000	112870000	128460000	60213000	68251000	11371	1313	10770	69914;69915;69916;69917	94402;94403	94402			2	
EFVVIAPAAHSDAVLSESK	1	Unmodified	1969.0157	0.015656649	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.514	66.939	3	0.00013341	58440	160511_QHF_FH_JSI11i_2	66.448	56.308			0.3642	0.36788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3642	0.36788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	170340000	132140000	38191000	0	0	0	0	0	0	170340000	132140000	38191000	0	0	0	11372	2612	10771	69918	94404	94404			1	
EFWPQEVWSR	0	Unmodified	1362.6357	0.63568542	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	79.373	78.56	2	0.0027567	68986	160511_QHF_FH_JSI11i_2	57.96	46.112			0.91125	1.0088	21.576	4	0	Median	1.5194	1.3089	NaN	1	0	Median	0.91374	1.1234	NaN	1	0	Median	0.90877	0.90595	NaN	1	0	Median	0.76065	0.80836	NaN	1	0	Median	80465000	38191000	42274000	11410000	4502600	6907600	23657000	11209000	12448000	31257000	14306000	16951000	14142000	8173800	5967900	11373	1469	10772	69919;69920;69921;69922	94405;94406	94406			2	
EFYGENIK	1	Unmodified	998.47091	0.4709115	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.5	0.5	3	3								1	2	2	1	33.858	33.266	2	0.0061156	28824	160511_QHF_FH_JSI9i_2	63.565	32.953			1.02	1.1267	30.604	6	1	Median	1.0002	0.85133	NaN	1	0	Median	0.92743	1.1267	0.44429	2	0	Median	1.6874	1.6671	33.387	2	1	Median	1.0402	1.0592	NaN	1	0	Median	606780000	313210000	293570000	81104000	38906000	42197000	246490000	154580000	91915000	197190000	80975000	116220000	81997000	38755000	43242000	11374	1745	10773	69923;69924;69925;69926;69927;69928	94407;94408;94409;94410;94411	94408			5	
EFYILWTK	1	Unmodified	1098.575	0.57498264	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	1	3	2	2	84.156	79.675	2	0.00027163	40869	160513_QHF_FH_JSI9Kac_6	117.04	98.305			0.89423	0.93845	19.904	8	2	Median	1.1555	0.98613	NaN	1	0	Median	0.84523	0.99303	32.375	3	2	Median	0.99258	0.96568	11.054	2	0	Median	0.80139	0.86365	3.1665	2	0	Median	3345400000	1697400000	1647900000	632190000	263040000	369150000	1026800000	581660000	445170000	1019100000	530220000	488920000	667200000	322510000	344690000	11375	1122	10774	69929;69930;69931;69932;69933;69934;69935;69936	94412;94413;94414;94415;94416;94417;94418;94419;94420;94421;94422;94423	94420			12	
EFYQLVWSALPFITYLENK	1	Unmodified	2360.2093	0.20927108	3939	Q969H6	POP5	Ribonuclease P/MRP protein subunit POP5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.15	95.434	3	0.00010858	56361	160513_QHF_FH_JSI10Kac_6	70.414	62.61			0.94905	1.1353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94905	1.1353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96771000	40747000	56025000	0	0	0	96771000	40747000	56025000	0	0	0	0	0	0	11376	3939	10775	69937	94424	94424			1	
EFYSEILDK	1	Unmodified	1142.5496	0.54955575	2347	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	61.018	60.437	2	0.002069	55084	160511_QHF_FH_JSI12i_1	66.299	48.313			1.1206	1.1578	61.95	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7778	1.7942	NaN	1	1	Median	0.70633	0.74709	NaN	1	0	Median	156030000	64203000	91824000	0	0	0	0	0	0	113320000	41020000	72304000	42702000	23183000	19520000	11377	2347	10776	69938;69939	94425;94426	94425			2	
EGAAAAPPPER	0	Unmodified	1064.5251	0.52507234	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5	5.66	2					1				1		2		12.004	9.2445	2	7.8477E-05	7922	160511_QHF_FH_JSI11i_1	100.57	65.761			0.64928	0.57862	21.003	3	3	Plateau	0.64012	0.52001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73751	0.71385	14.597	2	2	Median	NaN	NaN	NaN	0	0	Median	372530000	254060000	118470000	226200000	166030000	60170000	0	0	0	146340000	88037000	58300000	0	0	0	11378	3248	10777	69940;69941;69942	94427;94428;94429	94427			3	
EGAAEGPLDPSGYNPAK	1	Unmodified	1671.774	0.77402939	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	47.525	46.761	2	8.0833E-11	42554	160511_QHF_FH_JSI12i_1	172.09	149.76			0.72532	0.70365	10.518	3	3	Median	0.97925	0.81507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72532	0.70365	NaN	1	1	Median	0.65005	0.66478	NaN	1	1	Median	352640000	238680000	113960000	118470000	81203000	37271000	0	0	0	167450000	120180000	47273000	66709000	37297000	29412000	11379	1148	10778	69943;69944;69945	94430;94431;94432;94433	94431			4	
EGAAGAGVAQAGPLVDGELLR	0	Unmodified	1950.0171	0.017053633	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	5									1	1	1	2	75.954	75.47	2;3	9.6386E-06	67086	160511_QHF_FH_JSI9i_1	63.225	52.958			1.2952	1.2879	34.622	4	0	Median	1.4155	1.1775	NaN	1	0	Median	1.1852	1.4085	NaN	1	0	Median	1.4728	1.4119	NaN	1	0	Median	0.66049	0.67866	NaN	1	0	Median	149970000	75126000	74839000	33333000	12992000	20341000	45086000	25372000	19714000	37235000	17402000	19833000	34311000	19359000	14951000	11380	2841	10779	69946;69947;69948;69949;69950	94434;94435;94436;94437;94438;94439	94438			6	
EGAAHAFAQYNLDQFTPVK	1	Unmodified	2106.0171	0.017053633	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	73.768	70.632	3	2.3245E-18	35595	160513_QHF_FH_JSI12Kac_6	135.29	119.7			0.84702	0.97599	23.708	9	2	Median	1.5258	1.3206	15.452	2	1	Median	0.84506	1.0049	2.6726	2	0	Median	0.99787	0.97412	0.27077	2	1	Median	0.76146	0.80012	13.006	3	0	Median	890220000	473410000	416800000	108900000	44529000	64376000	207860000	118070000	89790000	250370000	121560000	128800000	323090000	189260000	133830000	11381	1606	10780	69951;69952;69953;69954;69955;69956;69957;69958;69959;69960	94440;94441;94442;94443;94444;94445;94446;94447;94448;94449;94450;94451;94452;94453;94454	94452			15	
EGAAHAFAQYNMDQFTPVK	1	Unmodified	2123.9735	0.97347426	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		6	6						2	3	3	4	4	67.074	65.053	2;3	1.1028E-33	57347	160511_QHF_FH_JSI9i_2	157.75	136.89			1.0189	1.1038	30.454	11	3	Median	2.1612	1.8086	0.31668	2	2	Median	0.89808	1.1038	19.19	3	0	Median	1.0189	1.0462	18.035	3	0	Median	0.82735	0.81859	24.481	3	1	Median	1849700000	916280000	933380000	30288000	8894300	21393000	498350000	230020000	268330000	706760000	337360000	369390000	614260000	340000000	274260000	11382	1788	10781	69961;69962;69963;69964;69965;69966;69967;69968;69969;69970;69971;69972;69973;69974	94455;94456;94457;94458;94459;94460;94461;94462;94463;94464;94465;94466;94467;94468;94469;94470;94471	94459			16	
EGAAHAFAQYNMDQFTPVK	1	Oxidation (M)	2139.9684	0.96838888	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	53.078	52.843	3	1.3471E-05	45330	160511_QHF_FH_JSI12i_3	78.848	69.318			0.772	0.76157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.772	0.76157	NaN	1	0	Median	26962000	15919000	11043000	0	0	0	0	0	0	0	0	0	26962000	15919000	11043000	11383	1788	10781	69975	94472	94472		1468	1	
EGAAPGAARPTAPNAQTPSHLGATLPVGQPVGGDPEVRK	1	Unmodified	3770.9452	0.94523268	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				56.645	55.089	5	0.015761	45163	160511_QHF_FH_JSI9i_3	28.124	23.315			1.659	1.341	NaN	1	1	Median	1.659	1.341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24097000	7609300	16488000	24097000	7609300	16488000	0	0	0	0	0	0	0	0	0	11384	1319	10782	69976	94473	94473			1	
EGADEEEWVVAK	1	Unmodified	1360.6147	0.61467521	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	46.24	45.568	2	2.1088E-07	40499	160511_QHF_FH_JSI9i_1	132.32	119.53			0.75824	0.76772	22.976	5	2	Median	1.0763	0.88638	NaN	1	0	Median	0.64512	0.76772	NaN	1	0	Median	0.75824	0.73292	NaN	1	0	Median	0.79628	0.83578	43.381	2	2	Median	288750000	169320000	119430000	53335000	30207000	23128000	75104000	50805000	24298000	73735000	42876000	30859000	86574000	45428000	41147000	11385	4664	10783	69977;69978;69979;69980;69981	94474;94475;94476;94477;94478;94479;94480	94478			7	
EGAEMESSK	1	Unmodified	966.39643	0.39642593	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	6.1164	5.8867	2	1.8447E-05	3716	160511_QHF_FH_JSI11i_1	107.69	47.012			1.0382	1.0627	6.91	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98019	1.1381	NaN	1	1	Median	1.0151	0.99122	NaN	1	0	Median	1.04	1.0627	NaN	1	0	Median	192300000	90358000	101940000	0	0	0	70386000	35241000	35144000	54197000	23647000	30549000	67718000	31470000	36249000	11386	4651	10784	69982;69983;69984	94481;94482	94481			2	
EGAENLRK	1	Unmodified	915.47739	0.47739386	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	6.2109	5.9748	2	0.0056894	3512	160511_QHF_FH_JSI12i_3	65.156	11.278			0.76345	0.82964	32.669	4	0	Median	1.2041	1.041	NaN	1	0	Median	0.63315	0.76487	NaN	1	0	Median	0.92056	0.89989	NaN	1	0	Median	0.48631	0.48967	NaN	1	0	Median	241440000	130060000	111380000	58560000	25952000	32609000	52285000	32300000	19986000	49273000	28642000	20632000	81322000	43163000	38159000	11387	2732	10785	69985;69986;69987;69988	94483	94483			1	
EGAFSNFPISEETIK	1	Unmodified	1667.8043	0.80426689	4940;4346	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	4	6	2							4	2	3	3	74.629	73.787	2	1.9458E-57	67221	160511_QHF_FH_JSI12i_1	262	216.63			1.057	1.0829	24.076	12	9	Median	1.5305	1.2916	9.6438	4	3	Median	0.82299	0.99244	10.012	2	1	Median	1.068	1.1008	7.5353	3	2	Median	0.64484	0.66891	19.318	3	3	Plateau	2732400000	1311100000	1421200000	624150000	223400000	400760000	139670000	78592000	61078000	897810000	397700000	500120000	1070700000	611450000	459290000	11388	4940;4346	10786	69989;69990;69991;69992;69993;69994;69995;69996;69997;69998;69999;70000	94484;94485;94486;94487;94488;94489;94490;94491;94492;94493;94494;94495;94496;94497;94498;94499;94500;94501;94502;94503;94504;94505;94506;94507;94508	94493			25	
EGAITFTWVER	0	Unmodified	1307.651	0.65100113	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	73.303	72.431	2	0.0259	63843	160511_QHF_FH_JSI9i_2	57.348	43.995			1.0905	1.1904	9.3785	4	0	Median	1.5943	1.3847	NaN	1	0	Median	0.99152	1.228	NaN	1	0	Median	1.1647	1.154	NaN	1	0	Median	1.021	1.1206	NaN	1	0	Median	89897000	44840000	45056000	15034000	6167500	8866200	23929000	12875000	11053000	29624000	13493000	16131000	21310000	12304000	9005700	11389	1528	10787	70001;70002;70003;70004	94509;94510	94509			0	
EGAKHFSGLEEAVYR	1	Acetyl (K)	1733.8373	0.83729835	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3		1	2	2	63.237	52.938	3	0.00027739	28576	160513_QHF_FH_JSI11Kac_6	102.58	90.886			0.22153	0.23069	122.83	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0173	1.2051	NaN	1	0	Median	0.20924	0.20493	117.51	2	1	Median	0.10372	0.11313	NaN	1	1	Median	55158000	47308000	7850100	0	0	0	5685300	2906700	2778600	41144000	36555000	4588700	8328200	7845500	482770	11390	1721	10788	70005;70006;70007;70008;70009	94511;94512;94513;94514;94515	94511	1730		5	
EGAKYVSHGATGK	2	Acetyl (K)	1345.6626	0.66262845	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.759							8	10	6	3	8	7	6	17.836	9.3567	2;3	2.5814E-08	7249	160513_QHF_FH_JSI10Kac_4	105.46	89.704			0.65489	0.70607	58.192	22	1	Median	1.1592	0.98052	5.8622	3	0	Median	0.82761	0.98972	12.165	7	0	Median	0.37638	0.37423	42.25	7	1	Median	0.5395	0.5918	12.255	5	0	Median	1322100000	748190000	573910000	46395000	15964000	30431000	297240000	123130000	174110000	681580000	411570000	270010000	296890000	197530000	99360000	11391	779	10789	70010;70011;70012;70013;70014;70015;70016;70017;70018;70019;70020;70021;70022;70023;70024;70025;70026;70027;70028;70029;70030;70031;70032;70033	94516;94517;94518;94519;94520;94521;94522;94523;94524;94525;94526;94527;94528;94529;94530;94531;94532;94533;94534;94535;94536;94537;94538;94539;94540;94541;94542;94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553;94554;94555;94556	94520	406		41	
EGALCEENMR	0	Oxidation (M)	1223.4911	0.49107137	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2					2	4	5	16.3	14.602	2	7.4139E-06	8450	160511_QHF_FH_JSI10i_1	109.29	100.33			0.84176	0.86861	29.996	10	1	Median	NaN	NaN	NaN	0	0	Median	0.95775	1.1224	2.1984	2	0	Median	0.81922	0.79468	12.489	3	1	Median	0.76258	0.81106	40.071	5	0	Median	945440000	489160000	456280000	0	0	0	264860000	134100000	130760000	254300000	136320000	117980000	426290000	218750000	207540000	11392	1033	10790	70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044	94557;94558;94559;94560;94561;94562;94563;94564;94565;94566;94567;94568;94569;94570;94571;94572	94569		629	15	
EGALCEENMR	0	Unmodified	1207.4962	0.49615675	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	5.94	4	1				5	3			1	5	3	4	24.63	19.524	2	1.8942E-21	17168	160511_QHF_FH_JSI12i_1	183.43	164.45			0.91141	0.96936	20.979	13	5	Median	1.6423	1.3597	NaN	1	0	Median	0.94054	1.1319	14.219	5	2	Median	0.99686	0.95654	10.717	3	0	Plateau	0.89529	0.95576	25.676	4	3	Median	3101800000	1469700000	1632100000	523630000	195720000	327910000	613580000	261290000	352290000	1094300000	577550000	516720000	870310000	435110000	435190000	11393	1033	10790	70045;70046;70047;70048;70049;70050;70051;70052;70053;70054;70055;70056;70057	94573;94574;94575;94576;94577;94578;94579;94580;94581;94582;94583;94584;94585;94586;94587;94588;94589;94590	94576			18	
EGALDLSGLR	0	Unmodified	1029.5455	0.54547343	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	54.768	54.026	2	0.0025746	48026	160511_QHF_FH_JSI9i_1	59.052	32.169			0.98411	1.007	54.673	3	0	Median	2.3206	1.8756	NaN	1	0	Median	0.53805	0.6307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98411	1.007	NaN	1	0	Median	159800000	77257000	82538000	49875000	13323000	36552000	52164000	32878000	19286000	0	0	0	57756000	31056000	26700000	11394	2768	10791	70058;70059;70060	94591;94592	94592			2	
EGALFAFEMLCTMLGK	1	Unmodified	1816.8562	0.85618458	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		103.34	103.34	2	0.00054584	92431	160511_QHF_FH_JSI11i_3	77.593	62.903			1.352	1.2977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.352	1.2977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6425700	2360200	4065500	0	0	0	0	0	0	6425700	2360200	4065500	0	0	0	11395	3860	10792	70061	94593	94593			1	
EGALTAFRK	1	Unmodified	991.54508	0.5450795	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	3	2		24.438	23.548	2;3	0.00024498	18951	160511_QHF_FH_JSI9i_3	62.823	46.047			1.2325	1.2739	43.495	8	2	Median	1.3526	1.0813	49.939	3	1	Plateau	1.1135	1.2756	47.924	3	1	Median	1.0711	0.99741	6.2226	2	0	Median	NaN	NaN	NaN	0	0	Median	860630000	417920000	442710000	325640000	137750000	187890000	296680000	149640000	147040000	238310000	130530000	107780000	0	0	0	11396	2598	10793	70062;70063;70064;70065;70066;70067;70068;70069	94594;94595;94596;94597;94598;94599;94600;94601;94602;94603;94604	94600			11	
EGAPAAAPSPEAAPRK	1	Unmodified	1518.7791	0.77905519	5786				yes	yes	0	0	0	1	By MS/MS		By MS/MS		1	0	3									1		2		61.93	61.276	3	0.042861	55587	160511_QHF_FH_JSI11i_1	17.701	8.4131	+		0.92621	0.90237	22.346	3	0	Plateau	1.6301	1.3288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92621	0.90237	0	2	0	Median	NaN	NaN	NaN	0	0	Median	2116700000	1095900000	1020800000	437440000	179810000	257630000	0	0	0	1679300000	916060000	763220000	0	0	0	11397	5786	10794	70070;70071;70072	94605	94605			1	
EGAPIEPDPPVSHWKPEAVQYYEDGAR	1	Unmodified	3036.4254	0.42536488	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		69.516	69.516	4	0.00013538	61758	160511_QHF_FH_JSI11i_3	48.286	36.87			1.3682	1.2926	13.529	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3682	1.2926	13.529	2	2	Median	NaN	NaN	NaN	0	0	Median	115080000	50081000	64994000	0	0	0	0	0	0	115080000	50081000	64994000	0	0	0	11398	4114	10795	70073;70074	94606;94607	94606			2	
EGAQFSSHLINLLNPK	1	Unmodified	1766.9315	0.93153309	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	2	2	79.426	78.772	2;3	1.4132E-80	68314	160511_QHF_FH_JSI12i_3	234.69	224.46			0.96206	0.98795	27.36	7	1	Median	1.6067	1.2754	NaN	1	0	Median	0.89318	1.0408	11.59	2	1	Median	1.1431	1.0503	8.6512	2	0	Median	0.62426	0.64248	1.6544	2	0	Median	864560000	443000000	421550000	30659000	11755000	18904000	134060000	61640000	72416000	369340000	187610000	181730000	330500000	182000000	148500000	11399	5495	10796	70075;70076;70077;70078;70079;70080;70081;70082	94608;94609;94610;94611;94612;94613;94614;94615;94616;94617;94618;94619;94620;94621;94622	94622			15	
EGATKFGSQASQK	2	Acetyl (K)	1379.6681	0.66810776	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						3					2	1		28.09	20.219	2;3	0.003338	11748	160513_QHF_FH_JSI10Kac_3	69.01	51.574			1.2543	1.485	59.35	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3593	1.6009	10.624	2	0	Median	0.56548	0.57745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13505000	7136000	6368900	0	0	0	7477700	3309500	4168300	6027200	3826600	2200700	0	0	0	11400	3561	10797	70083;70084;70085	94623;94624;94625;94626	94625	2885		4	
EGATVYATGTHAQVEDGR	0	Unmodified	1860.8602	0.86021864	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	2.75	8	11					1			5	7	4	4	24.835	24.124	2;3	1.6013E-81	20067	160511_QHF_FH_JSI11i_2	247.32	223.95			0.96293	0.99728	36.483	16	3	Median	1.974	1.6316	12.135	3	1	Median	0.96081	1.1389	35.659	5	2	Median	1.0129	0.99728	3.1938	4	0	Median	0.61308	0.66285	13.081	4	0	Median	1658700000	857950000	800790000	271720000	112080000	159630000	462880000	243680000	219200000	571980000	278940000	293040000	352170000	223250000	128920000	11401	1394	10798	70086;70087;70088;70089;70090;70091;70092;70093;70094;70095;70096;70097;70098;70099;70100;70101;70102;70103;70104;70105	94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638;94639;94640;94641;94642;94643;94644;94645;94646;94647;94648;94649;94650;94651;94652;94653;94654;94655;94656;94657	94652			31	
EGAVLKPELK	2	Unmodified	1082.6336	0.63356015	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	28.853	28.643	2	0.014296	23973	160511_QHF_FH_JSI12i_3	68.893	52.353			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11402	2997	10799	70106;70107	94658;94659	94659			2	
EGAVVSAPSVK	1	Unmodified	1042.5659	0.56587452	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		37.707	28.724	2	0.01695	16717	160513_QHF_FH_JSI11Kac_3	53.327	30.587			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11403	2506	10800	70108	94660	94660			1	
EGDAHPLGALPVGTLINNVESEPGR	0	Unmodified	2541.2823	0.28232946	2949	Q5T653	MRPL2	39S ribosomal protein L2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.412	88.357	3	1.6042E-21	76777	160511_QHF_FH_JSI12i_3	132.72	125.84			1.0093	1.0569	27.596	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3623	1.2846	NaN	1	0	Median	0.74774	0.86954	NaN	1	0	Median	130060000	70707000	59358000	0	0	0	0	0	0	57722000	27178000	30544000	72343000	43529000	28814000	11404	2949	10801	70109;70110	94661;94662	94662			2	
EGDDGGIFPK	1	Unmodified	1033.4716	0.47163978	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	1	2	39.443	35.389	2	0.0045593	31064	160511_QHF_FH_JSI9i_1	65.404	49.201			0.75724	0.83253	36.478	5	3	Median	1.4233	1.1553	NaN	1	1	Median	0.53167	0.62251	NaN	1	1	Median	1.248	1.1884	NaN	1	0	Median	0.61946	0.66036	32.766	2	1	Median	295590000	158460000	137120000	82195000	30962000	51233000	135690000	79660000	56034000	2283700	827270	1456400	75413000	47014000	28399000	11405	2276	10802	70111;70112;70113;70114;70115	94663;94664;94665;94666	94666			4	
EGDDYEVIPNSNFYVSR	0	Unmodified	2002.8909	0.89085007	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	70.638	70.283	2	4.0663E-52	63958	160511_QHF_FH_JSI11i_1	217.88	204.22			0.872	1.0408	12.73	4	2	Median	NaN	NaN	NaN	0	0	Median	0.872	1.0408	2.1622	2	2	Median	1.2063	1.1239	NaN	1	0	Median	0.81903	0.8376	NaN	1	0	Median	291910000	148410000	143500000	0	0	0	152800000	82816000	69986000	69586000	30229000	39357000	69520000	35367000	34153000	11406	4989	10803	70116;70117;70118;70119	94667;94668;94669;94670;94671;94672	94668			6	
EGDFNNLTAAAFHKK	2	Acetyl (K)	1703.8267	0.82673367	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.076	61.275	3	0.036234	32788	160513_QHF_FH_JSI11Kac_5	51.727	41.388			0.25645	0.25752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25645	0.25752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8167500	6640400	1527000	0	0	0	0	0	0	8167500	6640400	1527000	0	0	0	11407	2647	10804	70120	94673	94673			1	
EGDFVLR	0	Unmodified	834.42357	0.42356738	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	35.093	34.698	2	0.033424	31523	160511_QHF_FH_JSI12i_1	50.632	19.328			0.98111	1.076	15.911	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98111	1.1876	NaN	1	0	Median	1.0082	0.97482	NaN	1	0	Median	0.83432	0.86681	NaN	1	0	Median	212000000	109450000	102550000	0	0	0	80435000	42519000	37916000	78210000	34017000	44194000	53357000	32918000	20438000	11408	871	10805	70121;70122;70123	94674	94674			1	
EGDGVYYNELETR	0	Unmodified	1543.6791	0.67906638	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	44.676	43.915	2	4.4058E-10	39422	160511_QHF_FH_JSI10i_1	142.1	130.88			0.75847	0.89192	35.37	3	1	Median	1.7929	1.5237	NaN	1	0	Median	0.753	0.89192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75847	0.78123	NaN	1	1	Median	273310000	142060000	131240000	65097000	28006000	37090000	112250000	66799000	45455000	0	0	0	95956000	47258000	48698000	11409	3563	10806	70124;70125;70126	94675;94676;94677;94678;94679	94676			5	
EGDIIPPLTGATPPLIGHLK	1	Unmodified	2038.1463	0.14627689	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								3	1	1	1	94.71	94.376	3	4.0319E-07	82887	160511_QHF_FH_JSI11i_2	95.814	86.995			0.93104	0.9036	36.458	5	2	Median	1.2558	1.0765	40.682	2	2	Median	0.73794	0.9036	NaN	1	0	Median	0.98147	0.97674	NaN	1	0	Median	0.47655	0.52167	NaN	1	0	Median	159360000	82103000	77256000	46247000	20827000	25420000	33081000	19257000	13825000	42851000	20046000	22805000	37179000	21973000	15206000	11410	2320	10807	70127;70128;70129;70130;70131;70132	94680;94681;94682;94683;94684;94685;94686;94687	94685			8	
EGDIVTLINK	1	Unmodified	1100.6077	0.60773933	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		57.867	57.444	2	0.056603	52063	160511_QHF_FH_JSI11i_1	41.796	33.575			1.8431	1.7707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8431	1.7707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35592000	18069000	17522000	0	0	0	0	0	0	35592000	18069000	17522000	0	0	0	11411	3982	10808	70133	94688	94688			1	
EGDKHTLSK	2	Acetyl (K)	1055.5247	0.52473799	852	P06703	S100A6	Protein S100-A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.484							5	3			3	3	2	11.467	2.6109	2;3	1.9259E-05	4724	160513_QHF_FH_JSI11Kac_4	117.02	103.67			0.3218	0.35161	69.127	8	0	Median	NaN	NaN	NaN	0	0	Median	0.92661	1.1252	6.7277	3	0	Median	0.29222	0.28872	3.6926	3	0	Plateau	0.3218	0.35161	4.9564	2	0	Median	729100000	544820000	184290000	0	0	0	169410000	77001000	92410000	483490000	408290000	75201000	76200000	59524000	16676000	11412	852	10809	70134;70135;70136;70137;70138;70139;70140;70141	94689;94690;94691;94692;94693;94694;94695	94693	511;512		7	
EGDKHTLSKK	3	2 Acetyl (K)	1225.6303	0.63026569	852	P06703	S100A6	Protein S100-A6	yes	yes	2	0	0	2			By MS/MS		14	0							1					1		20.306	12.672	3	0.019344	8909	160513_QHF_FH_JSI11Kac_4	52.863	42.34			0.32334	0.32413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32334	0.32413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4873500	4660500	212980	0	0	0	0	0	0	4873500	4660500	212980	0	0	0	11413	852	10810	70142	94696	94696	511;512		1	
EGDLHRIEIPFK	1	Unmodified	1452.7725	0.77251325	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.049	55.049	4	0.0016814	48739	160511_QHF_FH_JSI11i_3	51.841	42.154			1.1027	1.0176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1027	1.0176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51279000	27166000	24114000	0	0	0	0	0	0	51279000	27166000	24114000	0	0	0	11414	3371	10811	70143	94697	94697			1	
EGDLIAAQAR	0	Unmodified	1042.5407	0.5407224	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	25.381	25.087	2	2.4501E-13	22202	160511_QHF_FH_JSI12i_1	139.74	117.03			0.45922	0.53741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45922	0.53741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114460000	83092000	31371000	0	0	0	114460000	83092000	31371000	0	0	0	0	0	0	11415	791	10812	70144;70145;70146	94698;94699;94700	94699			3	
EGDLLFTVAK	1	Unmodified	1091.5863	0.58627561	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		65.64	65.204	2	0.015809	59165	160511_QHF_FH_JSI11i_1	50.978	40.691			1.0907	1.0724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0907	1.0724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	242470000	128460000	114020000	0	0	0	0	0	0	242470000	128460000	114020000	0	0	0	11416	2391	10813	70147	94701	94701			1	
EGDNILPDQTSQDLK	1	Unmodified	1671.7952	0.79515877	4925	Q9NQS1	AVEN	Cell death regulator Aven	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	49.31	48.369	2	0.00017875	42949	160511_QHF_FH_JSI9i_1	106.26	90.718			1.2195	1.1229	15.976	2	2	Median	1.2568	1.003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1834	1.2572	NaN	1	1	Median	101140000	53614000	47524000	40118000	22988000	17130000	0	0	0	0	0	0	61020000	30626000	30394000	11417	4925	10814	70148;70149	94702;94703	94703			2	
EGDPAIYAER	0	Unmodified	1119.5197	0.51965261	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					1	1	2	29.862	25.338	2	1.2725E-05	22564	160511_QHF_FH_JSI12i_1	102.55	90.832			0.86223	0.97505	23.956	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80589	0.96258	NaN	1	0	Median	1.3766	1.3543	NaN	1	0	Median	0.80922	0.86371	18.969	2	0	Median	488720000	268700000	220020000	0	0	0	225100000	112540000	112560000	6563700	2851900	3711700	257060000	153300000	103750000	11418	5280	10815	70150;70151;70152;70153	94704;94705;94706;94707	94704			4	
EGDQTSNNIPADIVFVLK	1	Unmodified	1958.9949	0.99492121	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	100.65	100.52	2	1.4156E-23	90968	160511_QHF_FH_JSI10i_1	224.42	207.05			0.91696	0.82435	20.598	7	6	Median	0.97592	0.80083	7.0343	2	2	Median	0.69534	0.82435	NaN	1	0	Median	0.99017	0.96495	10.286	2	2	Median	0.58749	0.60545	12.57	2	2	Median	583350000	330620000	252730000	105790000	56270000	49519000	123720000	75655000	48069000	166340000	77042000	89298000	187490000	121650000	65846000	11419	1262	10816	70154;70155;70156;70157;70158;70159;70160	94708;94709;94710;94711;94712;94713;94714;94715	94713			8	
EGDRVEIR	0	Unmodified	972.49886	0.49885759	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	1	3	10.444	9.9861	2;3	0.031406	7962	160511_QHF_FH_JSI10i_2	28.727	5.9868			0.92038	1.0722	24.865	8	0	Median	1.6	1.3779	17.71	2	0	Median	0.87856	1.0722	12.737	2	0	Median	1.2639	1.2855	NaN	1	0	Median	0.79538	0.88443	12.302	3	0	Median	674220000	361550000	312670000	151330000	59336000	91993000	238040000	141770000	96270000	98118000	42872000	55246000	186740000	117570000	69162000	11420	1554	10817	70161;70162;70163;70164;70165;70166;70167;70168	94716;94717;94718	94718			3	
EGDSIAVILFSGVHFYTGQHFNIPAITK	1	Unmodified	3060.5709	0.5709069	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		96.561	88.247	3;4	2.007E-117	52497	160513_QHF_FH_JSI10Kac_6	244.21	203.45			1.0703	0.91894	37.038	4	1	Median	1.0703	0.91894	3.3119	2	1	Median	0.65756	0.7857	NaN	1	0	Median	1.8826	1.8006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1641300000	770720000	870570000	548890000	241900000	306980000	617970000	353310000	264660000	474440000	175510000	298930000	0	0	0	11421	2757	10818	70169;70170;70171;70172	94719;94720;94721;94722;94723	94722			5	
EGDTIIVPGVEGPIVTQIR	0	Unmodified	1992.0892	0.089155943	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	91.79	91.452	2	1.4612E-13	82841	160511_QHF_FH_JSI10i_1	142.57	128.67			0.93718	1.0647	24.394	5	2	Median	1.6722	1.3354	NaN	1	0	Median	0.88624	1.0416	6.6904	2	2	Median	1.0959	1.0647	NaN	1	0	Median	0.66588	0.68489	NaN	1	0	Median	369070000	188860000	180210000	41349000	14149000	27200000	181700000	98824000	82872000	74238000	35262000	38976000	71785000	40624000	31161000	11422	454	10819	70173;70174;70175;70176;70177	94724;94725;94726;94727;94728;94729;94730;94731;94732	94730			9	
EGDTMMGQQVAK	1	Unmodified	1293.5693	0.56932169	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.291	23.74	2	9.4575E-16	20728	160511_QHF_FH_JSI10i_1	156.83	130.38			1.2879	1.2882	61.829	4	0	Median	1.5872	1.3087	NaN	1	0	Median	1.2718	1.5271	NaN	1	0	Median	1.3042	1.2681	NaN	1	0	Median	0.38125	0.40017	NaN	1	0	Median	1308900000	621780000	687150000	318650000	136150000	182490000	292670000	115880000	176790000	380890000	176920000	203970000	316730000	192830000	123900000	11423	2581	10820	70178;70179;70180;70181	94733;94734;94735;94736;94737;94738;94739;94740;94741	94739			9	
EGDTMMGQQVAK	1	Oxidation (M)	1309.5642	0.56423631	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	1	2	22.65	21.923	2	9.3306E-16	20704	160511_QHF_FH_JSI11i_1	161.17	148.55			1.213	1.1042	41.597	6	0	Median	1.3032	1.1035	57.262	3	0	Median	0.73225	0.87286	NaN	1	0	Median	1.1291	1.1048	NaN	1	0	Median	1.5335	1.6409	NaN	1	0	Median	391690000	190610000	201090000	164220000	69709000	94514000	82485000	44104000	38381000	84440000	41426000	43014000	60545000	35368000	25177000	11424	2581	10820	70182;70183;70184;70185;70186;70187;70188	94742;94743;94744;94745;94746;94747;94748;94749;94750	94742		2022;2023	9	
EGDVEEPTDDSLPTTGDAGGREPMEEK	1	Unmodified	2860.2193	0.21925601	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		47.112	46.701	3	0.040215	42180	160511_QHF_FH_JSI11i_1	23.284	19.664			1.5532	1.503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5532	1.503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73845000	19034000	54811000	0	0	0	0	0	0	73845000	19034000	54811000	0	0	0	11425	5376	10821	70189	94751	94751			1	
EGDVLTLLESER	0	Unmodified	1359.6882	0.6881745	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.25	7	3	3				2			4	6	3	2	81.045	78.75	2	8.3255E-42	70728	160511_QHF_FH_JSI9i_2	205.53	178.28			0.88111	0.9626	22.962	12	3	Median	1.5482	1.2535	7.6299	3	1	Median	0.80105	0.9626	6.5416	4	1	Median	0.96052	0.89895	10.96	3	0	Median	0.6174	0.65194	7.7609	2	1	Median	4535600000	2439900000	2095700000	874610000	348300000	526310000	1254600000	717890000	536740000	1930900000	1038200000	892720000	475430000	335540000	139900000	11426	2028	10822	70190;70191;70192;70193;70194;70195;70196;70197;70198;70199;70200;70201;70202;70203;70204	94752;94753;94754;94755;94756;94757;94758;94759;94760;94761;94762;94763;94764;94765;94766;94767;94768;94769;94770;94771;94772;94773;94774;94775;94776	94768			25	
EGDVLTLLESEREAR	0	Unmodified	1715.869	0.86899241	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							3	2	5	4	71.498	70.859	2;3	5.1412E-10	62989	160511_QHF_FH_JSI10i_2	143.93	124.71			1.0028	1.1032	34.474	13	4	Median	1.9043	1.5845	8.3592	2	0	Median	0.95362	1.1758	9.0125	2	1	Median	1.1836	1.1917	12.846	5	2	Median	0.65842	0.68286	13.973	4	1	Median	3437600000	1653000000	1784600000	477160000	174770000	302390000	812320000	377770000	434550000	1296400000	572940000	723500000	851710000	527540000	324170000	11427	2028	10823	70205;70206;70207;70208;70209;70210;70211;70212;70213;70214;70215;70216;70217;70218	94777;94778;94779;94780;94781;94782;94783;94784;94785;94786;94787;94788;94789;94790;94791;94792;94793;94794;94795;94796;94797	94790			21	
EGDVLTPEQAR	0	Unmodified	1213.5939	0.59388018	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						3						2	1	33.27	24.609	2	0.0046165	14740	160513_QHF_FH_JSI11Kac_3	61.65	49.424			0.89107	0.86955	35.713	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1274	1.0804	30.706	2	1	Median	0.61042	0.66115	NaN	1	1	Median	8966900	4754800	4212100	0	0	0	0	0	0	6291700	3063800	3228000	2675200	1691000	984150	11428	5365	10824	70219;70220;70221	94798;94799;94800	94798			3	
EGDYVLFHHEGGVDVGDVDAK	1	Unmodified	2257.0287	0.028740531	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.403	59.135	3	8.8154E-08	50954	160511_QHF_FH_JSI12i_3	104.84	97.139			0.54266	0.57302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54266	0.57302	NaN	1	1	Median	21579000	16301000	5277900	0	0	0	0	0	0	0	0	0	21579000	16301000	5277900	11429	1798	10825	70222	94801	94801			1	
EGDYYVLNGSK	1	Unmodified	1243.5721	0.57208211	1571	P45954	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	38.033	37.508	2	0.0030983	33495	160511_QHF_FH_JSI10i_1	56.225	39.231			0.60206	0.69893	43.368	3	2	Median	NaN	NaN	NaN	0	0	Median	0.60206	0.69893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63988	0.67172	61.246	2	2	Median	283040000	218070000	64973000	0	0	0	198370000	174000000	24367000	0	0	0	84671000	44065000	40606000	11430	1571	10826	70223;70224;70225	94802;94803;94804;94805	94804			4	
EGEAVVLPEVEPGLTAR	0	Unmodified	1764.9258	0.92577901	1146	P18827	SDC1	Syndecan-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	74.328	73.883	2	0.0040658	67340	160511_QHF_FH_JSI11i_1	60.401	22.38			0.35217	0.36004	6.5187	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35178	0.34382	NaN	1	1	Median	0.35255	0.37702	NaN	1	1	Median	192660000	142660000	50004000	0	0	0	0	0	0	85997000	66662000	19335000	106660000	75993000	30669000	11431	1146	10827	70226;70227	94806;94807	94806			2	
EGEDGDQPTTPPK	1	Unmodified	1369.5998	0.59975342	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	12.554	12.074	2	0.00014909	9821	160511_QHF_FH_JSI12i_1	107.83	79.104			0.7109	0.70683	34.164	3	3	Median	0.5452	0.45053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92251	0.88062	NaN	1	1	Median	0.7109	0.70683	NaN	1	1	Median	62769000	39444000	23325000	23952000	17016000	6935700	0	0	0	22800000	12259000	10541000	16018000	10169000	5848700	11432	1148	10828	70228;70229;70230;70231	94808;94809;94810;94811	94810			4	
EGEDMIAEEHFGSEK	1	Unmodified	1706.7094	0.70938023	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	41.44	40.985	2;3	2.073E-05	36969	160511_QHF_FH_JSI11i_1	84.169	61.971			0.94254	0.9816	6.4311	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8812	1.0154	NaN	1	0	Median	1.1695	1.0934	NaN	1	0	Median	0.94254	0.96188	NaN	1	0	Median	241120000	131920000	109200000	0	0	0	85697000	45427000	40270000	67332000	37835000	29497000	88092000	48663000	39430000	11433	2162	10829	70232;70233;70234;70235;70236	94812;94813;94814;94815	94812			3	
EGEDPNKAEELPSEK	2	Unmodified	1670.7635	0.76352429	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	22.408	21.896	2;3	0.00064507	19226	160511_QHF_FH_JSI12i_1	72.446	56.648			0.68354	0.70362	11.903	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68354	0.70362	11.903	2	2	Median	107580000	60332000	47252000	0	0	0	0	0	0	0	0	0	107580000	60332000	47252000	11434	3947	10830	70237;70238	94816;94817	94816			2	
EGEDSSVIHYDDK	1	Unmodified	1492.6318	0.63178183	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.742	24.41	2;3	4.1977E-05	21325	160511_QHF_FH_JSI11i_1	169.65	151.03			0.75952	0.90062	24.166	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.8998	1.0904	NaN	1	0	Median	1.2157	1.1633	NaN	1	1	Median	0.69668	0.74386	NaN	1	0	Median	208380000	111260000	97123000	0	0	0	81016000	42565000	38451000	21258000	5473500	15785000	106100000	63217000	42887000	11435	2578	10831	70239;70240;70241	94818;94819;94820	94818			2	
EGEEADAPGVIPGIVGAVVVAVAGAISSFIAYQK	1	Unmodified	3283.734	0.73400907	1049	P14209	CD99	CD99 antigen	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13.8	2.28				1	1				2		2	2		108.1	100.67	3	2.6152E-23	36010	160513_QHF_FH_JSI11Kac_1	111.79	99.871			0.58011	0.61971	29.436	4	3	Median	NaN	NaN	NaN	0	0	Median	0.61511	0.7177	14.042	2	2	Median	0.5057	0.4824	28.704	2	1	Median	NaN	NaN	NaN	0	0	Median	131830000	84680000	47151000	0	0	0	121310000	77164000	44146000	10520000	7515700	3004500	0	0	0	11436	1049	10832	70242;70243;70244;70245	94821;94822;94823;94824;94825	94822			5	
EGEEAGPGDPLLEAVPK	1	Unmodified	1706.8363	0.8362953	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.75	8				1	4				2	3	3	5	71.078	67.888	2;3	1.2185E-65	60512	160511_QHF_FH_JSI9i_1	232.37	210.34			0.9863	0.97343	13.671	12	0	Median	1.1806	0.97343	2.886	2	0	Median	0.92168	1.0669	12.074	3	0	Median	0.99164	0.97399	13.882	3	0	Plateau	0.82913	0.8675	17.292	4	0	Median	3419200000	1775600000	1643600000	824310000	387860000	436450000	929130000	499570000	429570000	871490000	437700000	433790000	794270000	450480000	343800000	11437	2738	10833	70246;70247;70248;70249;70250;70251;70252;70253;70254;70255;70256;70257;70258	94826;94827;94828;94829;94830;94831;94832;94833;94834;94835;94836;94837;94838;94839;94840;94841;94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852;94853;94854;94855;94856;94857	94848			32	
EGEEEQAINR	0	Unmodified	1173.5262	0.52619455	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				6.7215	-0.36911	3	0.051447	2264	160513_QHF_FH_JSI9Kac_6	17.026	7.3383			1.6977	1.5497	NaN	1	0	Median	1.6977	1.5497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3481900	1293600	2188300	3481900	1293600	2188300	0	0	0	0	0	0	0	0	0	11438	4733	10834	70259	94858	94858			1	
EGEEPTVYSDEEEPK	1	Unmodified	1736.7265	0.72647008	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									1		2	3	31.36	30.788	2	1.378E-16	27597	160511_QHF_FH_JSI11i_1	122.33	112.44			0.95269	0.94101	44.384	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95269	0.94101	44.384	2	2	Median	26139000	15252000	10887000	0	0	0	0	0	0	0	0	0	26139000	15252000	10887000	11439	115	10835	70260;70261;70262;70263;70264;70265	94859;94860;94861;94862;94863;94864;94865	94860			7	
EGEEPTVYSDEEEPKDESAR	1	Unmodified	2294.9663	0.96625943	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.623	28.182	3	8.3499E-06	24990	160511_QHF_FH_JSI10i_1	90.968	82.367			0.7818	0.88003	1.9565	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75933	0.89229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80494	0.86794	NaN	1	1	Median	64946000	41279000	23667000	0	0	0	28226000	18288000	9938500	0	0	0	36719000	22991000	13728000	11440	115	10836	70266;70267;70268	94866;94867;94868	94868			3	
EGEEQLQTQHQK	1	Unmodified	1453.6797	0.67973508	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.2804	8.0426	2	3.5525E-24	5902	160511_QHF_FH_JSI10i_1	221.52	173.91			4.4205	4.655	27.679	3	3	Median	NaN	NaN	NaN	0	0	Median	3.0629	3.5415	NaN	1	1	Median	6.311	6.1603	NaN	1	1	Median	4.4205	4.655	NaN	1	1	Median	402430000	55361000	347070000	0	0	0	115840000	18896000	96943000	142120000	18831000	123290000	144470000	17633000	126840000	11441	1366	10837	70269;70270;70271	94869;94870;94871	94871			3	
EGEEVMFK	1	Unmodified	967.43208	0.43208315	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			32.715	31.915	2	0.0024754	28549	160511_QHF_FH_JSI10i_1	79.809	68.936			0.93944	0.93051	26.669	2	0	Median	1.3594	1.1236	NaN	1	0	Median	0.64921	0.77059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	376760000	166340000	210410000	158590000	58015000	100570000	218170000	108330000	109840000	0	0	0	0	0	0	11442	2517	10838	70272;70273	94872	94872			1	
EGEFVAQFK	1	Unmodified	1053.5131	0.51311067	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.93	3	5	2				3	2		4	5	3	3	49.043	45.299	2	1.8688E-08	38782	160511_QHF_FH_JSI12i_2	159.04	126.57			1.0507	1.1314	22.765	14	5	Median	1.6409	1.3875	27.476	4	3	Median	0.97728	1.1557	2.4607	4	0	Median	1.1587	1.1271	1.3336	3	1	Median	0.78887	0.86913	11.775	3	1	Median	5784700000	2757400000	3027300000	773850000	300590000	473260000	1708500000	824720000	883770000	1712300000	871020000	841290000	1590100000	761120000	828970000	11443	5475	10839	70274;70275;70276;70277;70278;70279;70280;70281;70282;70283;70284;70285;70286;70287;70288	94873;94874;94875;94876;94877;94878;94879;94880;94881;94882;94883;94884;94885;94886;94887;94888;94889;94890;94891;94892;94893;94894;94895;94896;94897;94898;94899;94900	94877			28	
EGEGLGKYSQGR	1	Acetyl (K)	1321.6262	0.62624295	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	34.531	25.19	2	4.7184E-05	14886	160513_QHF_FH_JSI10Kac_4	96.015	69.501			0.80182	0.90732	29.612	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94611	1.1187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67954	0.73591	NaN	1	0	Median	11106000	7063100	4043200	0	0	0	6457800	4068200	2389600	0	0	0	4648500	2994900	1653600	11444	3505	10840	70289;70290	94901;94902	94901	2873		2	
EGEGLGSEGQGIK	1	Unmodified	1259.5994	0.59935949	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	22.676	22.367	2	8.47E-05	19438	160511_QHF_FH_JSI10i_1	97.813	79.949			0.67638	0.6593	31.206	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77437	0.87612	NaN	1	0	Median	0.67638	0.6593	NaN	1	0	Median	0.45565	0.46974	NaN	1	0	Median	117910000	75828000	42085000	0	0	0	30880000	21182000	9697900	45534000	26931000	18603000	41500000	27715000	13785000	11445	3435	10841	70291;70292;70293	94903;94904;94905;94906	94906			4	
EGEIAQFLCDIK	1	Unmodified	1421.6861	0.68606601	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.911	87.149	2	0.00015689	76592	160511_QHF_FH_JSI11i_2	81.865	56.206			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11446	102	10842	70294;70295	94907;94908	94908			2	
EGEIQAGAK	1	Unmodified	901.45051	0.45051041	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.4485	6.1375	2	1.6141E-05	5944	160511_QHF_FH_JSI11i_1	108.74	65.619			0.79076	0.84874	20.947	7	0	Median	1.251	1.0249	NaN	1	0	Median	0.71666	0.84336	14.794	2	0	Median	0.96363	0.94189	14.727	2	0	Median	0.63815	0.69162	28.044	2	0	Median	1531500000	853490000	677970000	376820000	175070000	201750000	390300000	221350000	168950000	390970000	218750000	172210000	373370000	238310000	135060000	11447	2400	10843	70296;70297;70298;70299;70300;70301;70302	94909;94910;94911;94912;94913	94909			5	
EGEKDAAAAK	2	Acetyl (K)	1030.4931	0.49310351	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12	0					3						1	2		10.908	3.6387	2	0.032445	3581	160513_QHF_FH_JSI11Kac_2	55.549	30.627			5.5832	5.4451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.5832	5.4451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12234000	10139000	2094300	0	0	0	4342800	4342800	0	7890900	5796600	2094300	0	0	0	11448	2101	10844	70303;70304;70305	94914;94915;94916	94914	2211		3	
EGEMTLK	1	Unmodified	806.3844	0.38440468	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		16.343	15.866	2	0.032001	13335	160511_QHF_FH_JSI11i_1	51.335	31.975			1.3434	1.3102	19.912	3	0	Median	1.6678	1.3592	NaN	1	0	Median	0.79939	0.9466	NaN	1	0	Median	1.3434	1.3102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2516300000	1107900000	1408400000	858080000	287880000	570200000	872450000	438260000	434190000	785730000	381730000	404010000	0	0	0	11449	1267	10845	70306;70307;70308	94917;94918	94917			2	
EGENNKPR	1	Acetyl (K)	984.46247	0.46247208	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	6.8957	-0.36727	2	0.0064629	2624	160513_QHF_FH_JSI11Kac_3	82.426	52.35			1.1656	1.1396	24.44	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.61168	0.72289	NaN	1	0	Median	1.1656	1.1535	NaN	1	0	Median	0.76669	0.80647	NaN	1	0	Median	35660000	18969000	16691000	0	0	0	10481000	6538600	3942500	13678000	5928600	7749800	11500000	6501900	4998500	11450	1572	10846	70309;70310;70311	94919;94920;94921;94922	94920	1586		4	
EGENPPDGFMAPK	1	Unmodified	1387.6078	0.60781569	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	41.957	41.197	2	6.7646E-23	37051	160511_QHF_FH_JSI11i_1	150.09	126.33			1.3456	1.2278	14.427	5	2	Median	1.4473	1.1865	4.8408	2	2	Median	1.0647	1.2734	NaN	1	0	Median	1.3456	1.301	NaN	1	0	Median	0.8851	0.91161	NaN	1	0	Median	963820000	455750000	508070000	332360000	139800000	192560000	223570000	107280000	116300000	216400000	117870000	98534000	191490000	90810000	100680000	11451	678	10847	70312;70313;70314;70315;70316;70317	94923;94924;94925;94926;94927;94928;94929;94930;94931;94932;94933;94934	94925			12	
EGENPPDGFMAPK	1	Oxidation (M)	1403.6027	0.60273031	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.717	33.475	2	0.003304	30243	160511_QHF_FH_JSI12i_1	60.434	50.746			1.9542	1.8676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9542	1.8676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32914000	8155100	24759000	0	0	0	0	0	0	32914000	8155100	24759000	0	0	0	11452	678	10847	70318;70319;70320	94935;94936;94937	94936		235	3	
EGESEDLASR	0	Unmodified	1091.4731	0.47309635	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		10.984	10.801	2	1.0326E-06	8606	160511_QHF_FH_JSI10i_1	125.71	107.8			1.1403	1.1916	16.48	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1544	1.3389	NaN	1	1	Median	1.1264	1.0605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	214150000	86285000	127870000	0	0	0	150870000	52923000	97952000	63279000	33362000	29917000	0	0	0	11453	2270	10848	70321;70322	94938;94939	94939			2	
EGETVEPYK	1	Unmodified	1050.487	0.4869555	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.66	7				1	3				2	3	3	3	20.392	17.376	2	1.5256E-05	14696	160511_QHF_FH_JSI9i_1	122.52	101.54			0.95521	0.94272	22.683	11	8	Median	1.1699	0.96675	27.134	2	2	Median	0.95521	1.1433	12.136	3	2	Median	0.98686	0.94991	28.977	3	2	Plateau	0.84919	0.93545	22.911	3	2	Median	4186700000	2208400000	1978300000	982410000	469120000	513300000	600510000	320050000	280460000	1236400000	649400000	587040000	1367300000	769850000	597470000	11454	2265	10849	70323;70324;70325;70326;70327;70328;70329;70330;70331;70332;70333	94940;94941;94942;94943;94944;94945;94946;94947;94948;94949;94950;94951	94948			10	
EGETYFDVVAVVDPVTR	0	Unmodified	1894.9313	0.93125832	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			98.771	98.653	2	1.7196E-07	89266	160511_QHF_FH_JSI10i_1	124.07	108.53			1.2596	1.2047	59.808	2	2	Median	2.2858	1.8388	NaN	1	1	Median	0.69409	0.78925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32109000	16050000	16059000	11067000	2806100	8260600	21042000	13244000	7797900	0	0	0	0	0	0	11455	5135	10850	70334;70335	94952;94953	94952			2	
EGFEKISK	2	Acetyl (K)	978.50221	0.50221163	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	0.661					1	4	3			1	2	3	2	38.698	28.269	2	1.2636E-06	17677	160513_QHF_FH_JSI10Kac_3	138.4	86.609			0.66434	0.65562	40.319	8	0	Median	1.8883	1.5995	NaN	1	0	Median	0.89787	1.067	8.3699	2	0	Median	0.65665	0.64795	6.7447	3	0	Median	0.49768	0.5397	6.0664	2	0	Median	1102900000	565290000	537620000	362240000	124460000	237780000	248070000	129320000	118750000	307660000	208120000	99539000	184950000	103390000	81562000	11456	980	10851	70336;70337;70338;70339;70340;70341;70342;70343	94954;94955;94956;94957;94958;94959;94960;94961	94961	754		8	
EGFHFEETLTGFK	1	Unmodified	1540.7198	0.71980898	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		73.259	72.56	2	0.0016554	63676	160511_QHF_FH_JSI11i_2	72.652	57.68			3.2559	3.7269	41.669	2	2	Median	NaN	NaN	NaN	0	0	Median	4.0364	5.004	NaN	1	1	Median	2.6264	2.7758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86031000	20893000	65138000	0	0	0	48042000	10298000	37744000	37989000	10595000	27394000	0	0	0	11457	4080	10852	70344;70345	94962;94963	94962			2	
EGFIPSNYVAK	1	Unmodified	1223.6186	0.61863837	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				55.986	54.821	2	0.012108	48752	160511_QHF_FH_JSI9i_1	55.084	41.63			1.9165	1.5357	NaN	1	1	Median	1.9165	1.5357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40353000	13923000	26430000	40353000	13923000	26430000	0	0	0	0	0	0	0	0	0	11458	885	10853	70346	94964	94964			1	
EGFLDTLVVLHR	0	Unmodified	1397.7667	0.76669959	1547	P42771;P42772	CDKN2A;CDKN2B	Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.5		4	6						6	3	5	4	4	85.92	82.528	2;3	1.6454E-51	43004	160513_QHF_FH_JSI10Kac_6	186.02	182.7			0.87002	1.0178	36.317	16	4	Median	1.7205	1.4437	32.836	3	1	Median	0.78424	0.93252	13.77	5	1	Median	1.0907	1.0629	5.2782	4	0	Median	0.5878	0.62559	1.249	4	2	Median	1898900000	995860000	903070000	231130000	88925000	142200000	786800000	419170000	367630000	486000000	232280000	253720000	395000000	255490000	139520000	11459	1547	10854	70347;70348;70349;70350;70351;70352;70353;70354;70355;70356;70357;70358;70359;70360;70361;70362	94965;94966;94967;94968;94969;94970;94971;94972;94973;94974;94975;94976;94977;94978;94979;94980;94981;94982;94983;94984;94985;94986;94987;94988;94989;94990;94991;94992;94993;94994;94995;94996;94997;94998	94997			34	
EGFLESFKK	2	Unmodified	1083.5601	0.56006086	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							1	3			47.769	46.192	2;3	0.0051728	38630	160511_QHF_FH_JSI10i_3	72.879	35.068			0.82754	0.94823	37.862	4	2	Median	1.577	1.2639	NaN	1	0	Median	0.77188	0.88515	35.451	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202500000	117970000	84528000	54224000	23125000	31100000	148280000	94849000	53428000	0	0	0	0	0	0	11460	2625	10855	70363;70364;70365;70366	94999;95000;95001;95002;95003;95004	95002			6	
EGFLLALTQGR	0	Unmodified	1203.6612	0.66117189	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	81.125	80.4	2	8.7394E-05	67487	160511_QHF_FH_JSI10i_3	104.22	84.46			1.0596	1.0832	54.987	4	1	Median	2.1625	1.7849	NaN	1	1	Median	0.91963	1.0513	NaN	1	0	Median	1.2209	1.1161	NaN	1	0	Median	0.45758	0.47415	NaN	1	0	Median	174380000	83604000	90781000	32658000	11975000	20683000	32070000	13991000	18079000	70390000	33090000	37299000	39267000	24548000	14719000	11461	5338	10856	70367;70368;70369;70370	95005;95006;95007;95008	95006			4	
EGFSIPVSADGFK	1	Unmodified	1352.6612	0.66123147	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.431	75.935	2	2.1855E-06	68988	160511_QHF_FH_JSI11i_1	120.77	90.961			0.86989	1.0427	41.497	5	5	Median	2.0929	1.7414	NaN	1	1	Median	0.86989	1.0427	NaN	1	1	Median	1.2717	1.2607	NaN	1	1	Median	0.64631	0.67104	8.7329	2	2	Median	599020000	306780000	292240000	97984000	33439000	64544000	128160000	61953000	66207000	134820000	60724000	74092000	238060000	150670000	87397000	11462	1685;31;191	10857	70371;70372;70373;70374;70375	95009;95010;95011;95012;95013	95009			5	
EGFVEYTEQVVK	1	Unmodified	1426.698	0.6980109	127	O00410	IPO5	Importin-5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.63	4	5	2				1	1		4	4	2	3	66.154	64.385	2	8.7439E-16	57322	160511_QHF_FH_JSI9i_1	157.78	135.78			0.93619	1.0724	25.717	10	2	Median	1.5823	1.3258	9.0712	2	0	Median	0.89536	1.1015	5.8948	3	0	Plateau	1.1459	1.122	10.177	2	0	Median	0.65425	0.6907	10.946	3	2	Median	1917300000	911320000	1006000000	340400000	113030000	227370000	545500000	284080000	261420000	526910000	237440000	289470000	504540000	276780000	227760000	11463	127	10858	70376;70377;70378;70379;70380;70381;70382;70383;70384;70385;70386;70387;70388	95014;95015;95016;95017;95018;95019;95020;95021;95022;95023;95024;95025;95026;95027;95028;95029;95030;95031;95032;95033;95034;95035;95036	95029			23	
EGFVVKVR	1	Acetyl (K)	974.55492	0.5549159	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		56.539	45.641	2	0.042209	25040	160513_QHF_FH_JSI11Kac_5	50.703	35.205			0.24915	0.2471	15.737	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24915	0.2471	15.737	2	0	Median	NaN	NaN	NaN	0	0	Median	12010000	9178700	2831100	0	0	0	0	0	0	12010000	9178700	2831100	0	0	0	11464	1864	10859	70389;70390	95037	95037			1	
EGGAEESAIR	0	Unmodified	1017.4727	0.47270242	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.727	10.343	2	3.4855E-06	7841	160511_QHF_FH_JSI9i_1	118.71	79.749			1.0712	1.1485	24.351	4	1	Median	1.5772	1.2956	NaN	1	1	Median	0.97376	1.1409	NaN	1	0	Median	1.1783	1.1561	NaN	1	0	Median	0.71099	0.74464	NaN	1	0	Median	869590000	431190000	438400000	186920000	76854000	110060000	250630000	126560000	124080000	190250000	88745000	101510000	241790000	139030000	102760000	11465	1814	10860	70391;70392;70393;70394	95038;95039;95040;95041;95042;95043;95044	95044			7	
EGGAGAVDEDDFIK	1	Unmodified	1421.6311	0.63105355	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	48.293	47.75	2	0.0011069	42977	160511_QHF_FH_JSI10i_1	80.623	67.449			1.3059	1.4607	45.952	2	1	Median	NaN	NaN	NaN	0	0	Median	1.711	2.0215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9967	1.0555	NaN	1	0	Median	76823000	36357000	40466000	0	0	0	37618000	15695000	21923000	0	0	0	39206000	20662000	18543000	11466	476	10861	70395;70396;70397	95045;95046;95047	95046			3	
EGGDGAAGDPK	1	Unmodified	972.41485	0.41485319	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.0102	4.6685	2	0.00050728	2624	160511_QHF_FH_JSI11i_1	78.149	57.867			0.82012	0.83676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82012	0.83676	NaN	1	1	Median	128530000	72469000	56057000	0	0	0	0	0	0	0	0	0	128530000	72469000	56057000	11467	2415	10862	70398;70399	95048;95049	95048			2	
EGGDGAAGDPKK	2	Unmodified	1100.5098	0.5098162	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	3.42	9	3					1			2	3	5	3	4.7467	3.8377	2;3	1.0447E-49	2315	160511_QHF_FH_JSI12i_1	186.87	158.66			0.96573	1.065	20.594	12	2	Median	1.4469	1.1833	1.1425	2	0	Median	0.91153	1.0915	5.0349	3	0	Plateau	1.0522	1.0388	21.742	5	1	Median	0.77306	0.82444	26.652	2	1	Median	9689300000	4911200000	4778100000	1886600000	720730000	1165900000	2861300000	1512600000	1348700000	2638000000	1257000000	1381000000	2303500000	1420900000	882560000	11468	2415	10863	70400;70401;70402;70403;70404;70405;70406;70407;70408;70409;70410;70411;70412	95050;95051;95052;95053;95054;95055;95056;95057;95058;95059;95060;95061;95062;95063;95064;95065;95066;95067	95057			18	
EGGDGEEQDVGDAGR	0	Unmodified	1489.5917	0.59170793	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		11.283	10.878	2	1.3849E-29	8554	160511_QHF_FH_JSI11i_1	184.34	184.34			2.506	2.0241	87.903	3	2	Median	2.506	2.0241	NaN	1	1	Median	7.3538	8.5478	NaN	1	1	Median	1.7823	1.7379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168660000	46542000	122120000	60834000	17018000	43816000	49621000	5139900	44481000	58203000	24384000	33818000	0	0	0	11469	3506	10864	70413;70414;70415	95068;95069;95070	95068			3	
EGGEGYVPTSYLR	0	Unmodified	1426.6729	0.67285879	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				54.291	53.113	2	0.0007631	47161	160511_QHF_FH_JSI9i_1	80.782	62.918			1.4137	1.1722	4.0097	2	2	Median	1.4137	1.1722	4.0097	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218560000	108470000	110090000	218560000	108470000	110090000	0	0	0	0	0	0	0	0	0	11470	2690	10865	70416;70417	95071;95072	95071			2	
EGGFLLLHTLLR	0	Unmodified	1367.7925	0.79252041	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.82		5	28		1				12	14	14	10	8	91.607	88.17	2;3	1.6186E-108	44147	160513_QHF_FH_JSI10Kac_6	298.77	273.15			0.80588	0.87329	43.541	36	13	Median	1.4173	1.1665	35.459	13	2	Median	0.78659	0.9239	28.678	8	2	Median	0.77976	0.74249	11.502	8	4	Median	0.47652	0.49577	49.899	7	5	Median	24626000000	11888000000	12739000000	6296400000	2671500000	3624900000	8139100000	3249900000	4889200000	7236400000	3964200000	3272200000	2954600000	2002000000	952570000	11471	1650	10866	70418;70419;70420;70421;70422;70423;70424;70425;70426;70427;70428;70429;70430;70431;70432;70433;70434;70435;70436;70437;70438;70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453;70454;70455;70456;70457;70458;70459;70460;70461;70462;70463	95073;95074;95075;95076;95077;95078;95079;95080;95081;95082;95083;95084;95085;95086;95087;95088;95089;95090;95091;95092;95093;95094;95095;95096;95097;95098;95099;95100;95101;95102;95103;95104;95105;95106;95107;95108;95109;95110;95111;95112;95113;95114;95115;95116;95117;95118;95119;95120;95121;95122;95123;95124;95125;95126;95127;95128;95129;95130;95131;95132;95133;95134;95135;95136;95137;95138;95139;95140;95141;95142;95143;95144;95145;95146;95147;95148;95149;95150;95151;95152;95153	95153			81	
EGGGAIEEEAK	1	Unmodified	1088.4986	0.49858282	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	2	3	2	15.205	12.084	2	5.0297E-09	10294	160511_QHF_FH_JSI11i_1	122.98	79.796			0.84726	1.0084	24.947	5	2	Median	NaN	NaN	NaN	0	0	Median	0.81413	0.96978	5.5259	2	0	Median	1.2927	1.235	14.409	2	1	Median	0.66482	0.69331	NaN	1	1	Median	506000000	254370000	251620000	0	0	0	183230000	92223000	91003000	156860000	77204000	79653000	165910000	84947000	80968000	11472	3685	10867	70464;70465;70466;70467;70468;70469;70470;70471	95154;95155;95156;95157;95158;95159;95160;95161;95162;95163	95155			10	
EGGGDEPLNFLDPK	1	Unmodified	1486.694	0.69398816	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			72.927	72.732	2	0.00083772	65978	160511_QHF_FH_JSI10i_1	86.114	61.339			0.70396	0.83792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70396	0.83792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55136000	28106000	27030000	0	0	0	55136000	28106000	27030000	0	0	0	0	0	0	11473	2904	10868	70472	95164	95164			1	
EGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGK	1	Unmodified	3412.3605	0.36045353	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.247	33.666	3	7.0834E-15	30426	160511_QHF_FH_JSI12i_1	78.159	75.664			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11474	1639	10869	70473	95165	95165			1	
EGGGNNLYGEEMVQALK	1	Unmodified	1807.8411	0.8410631	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	69.104	68.529	2;3	6.6898E-81	62223	160511_QHF_FH_JSI11i_1	246.86	228.59			0.86249	1.0102	24.223	5	1	Median	1.4187	1.1788	NaN	1	0	Median	0.86249	1.0102	NaN	1	0	Median	1.2358	1.2226	NaN	1	0	Median	0.71147	0.75537	12.887	2	1	Median	592220000	269490000	322730000	162360000	58080000	104280000	157160000	72283000	84882000	129370000	57638000	71734000	143320000	81489000	61835000	11475	1629	10870	70474;70475;70476;70477;70478;70479	95166;95167;95168;95169;95170;95171;95172;95173;95174	95167			9	
EGGGSLAEYHAK	1	Unmodified	1217.5677	0.56766543	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		9						3		4	2	3	3	15.814	13.617	2;3	2.2253E-07	11029	160511_QHF_FH_JSI11i_2	131.82	108.5		+	0.88961	0.96561	44.556	11	2	Median	1.1295	0.96561	67.653	3	1	Median	0.41802	0.52071	31.192	2	1	Median	1.0994	1.1097	3.5695	3	0	Plateau	0.87854	0.98345	30.806	3	0	Plateau	789390000	433950000	355440000	117420000	58358000	59066000	128020000	76163000	51861000	289470000	139780000	149690000	254470000	159650000	94820000	11476	58	10871	70480;70481;70482;70483;70484;70485;70486;70487;70488;70489;70490;70491	95175;95176;95177;95178;95179;95180;95181;95182;95183;95184;95185;95186;95187;95188;95189;95190;95191	95183			17	
EGGIQHISWSYVWR	0	Unmodified	1716.8372	0.83723877	4464	Q9BV90	SNRNP25	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.713	70.463	3	5.4701E-05	38485	160513_QHF_FH_JSI10Kac_6	88.73	78.245			0.61019	0.69856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61019	0.69856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112000000	68065000	43936000	0	0	0	112000000	68065000	43936000	0	0	0	0	0	0	11477	4464	10872	70492	95192;95193	95193			2	
EGGKFGFAESIANQR	1	Acetyl (K)	1651.7954	0.79543354	2243	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.875	66.239	2	0.017623	35264	160513_QHF_FH_JSI11Kac_5	60.49	45.517			1.1062	1.0722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1062	1.0722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3388500	1683200	1705300	0	0	0	0	0	0	3388500	1683200	1705300	0	0	0	11478	2243	10873	70493	95194	95194	2344		1	
EGGLGPLNIPLLADVTR	0	Unmodified	1733.9676	0.96758424	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.634	7	5	1							3	2	4	4	101.93	101.81	2;3	2.118E-116	92602	160511_QHF_FH_JSI10i_1	268.35	245.43			0.93373	1.0062	31.74	13	4	Median	1.4688	1.2248	9.4774	3	0	Median	0.81911	0.95162	18.031	2	0	Median	1.0693	1.0688	17.655	4	2	Median	0.68261	0.71648	32.604	4	2	Median	16576000000	8523000000	8052800000	3598800000	1453900000	2144900000	1462000000	768120000	693840000	6788200000	3413500000	3374700000	4726900000	2887500000	1839400000	11479	1390	10874	70494;70495;70496;70497;70498;70499;70500;70501;70502;70503;70504;70505;70506	95195;95196;95197;95198;95199;95200;95201;95202;95203;95204;95205;95206;95207	95202			13	
EGGLGPLNIPLLADVTRR	0	Unmodified	1890.0687	0.068695273	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	101.2	101.12	2;3	2.8749E-23	90175	160511_QHF_FH_JSI11i_3	173.87	155.85			0.82874	0.93875	28.461	7	1	Median	1.3274	1.1094	NaN	1	0	Median	0.79176	0.96638	5.3388	2	1	Median	0.96612	0.95101	1.8353	2	0	Median	0.53316	0.57367	21.151	2	0	Median	3158100000	1658700000	1499400000	1031200000	412780000	618400000	958610000	569350000	389260000	799290000	424100000	375180000	369040000	252480000	116560000	11480	1390	10875	70507;70508;70509;70510;70511;70512;70513	95208;95209;95210;95211;95212;95213	95208			6	
EGGPNPEHNSNLANILEVCR	0	Unmodified	2219.0389	0.038928062	4396	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	62.107	62.107	3	3.8691E-06	53805	160511_QHF_FH_JSI12i_3	81.016	65.074			0.9774	0.91407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9774	0.91407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50022000	31359000	18664000	0	0	0	0	0	0	50022000	31359000	18664000	0	0	0	11481	4396	10876	70514;70515;70516	95214;95215;95216	95216			2	
EGGQDVPSNK	1	Unmodified	1029.4727	0.47270242	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	7.0789	5.3532	2	1.6853E-14	4441	160511_QHF_FH_JSI10i_1	165.98	122.21			1.0236	1.0042	19.98	5	0	Median	1.3362	1.0897	NaN	1	0	Median	0.7183	0.86207	NaN	1	0	Median	1.0609	1.0299	3.5733	2	0	Median	0.63486	0.67049	NaN	1	0	Median	850630000	447160000	403480000	183890000	73524000	110370000	266700000	144000000	122700000	195320000	98170000	97146000	204730000	131460000	73263000	11482	4568	10877	70517;70518;70519;70520;70521	95217;95218;95219;95220;95221	95220			5	
EGGQTAPASTR	0	Unmodified	1073.5102	0.51015055	848	P06396;CON__Q3SX14	GSN	Gelsolin	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	5.7724	1.8102	2	1.3297E-05	2888	160511_QHF_FH_JSI9i_1	106.62	82.646		+	1.3333	1.1939	27.369	2	0	Median	1.1794	0.98382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5073	1.4488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81141000	32805000	48336000	77937000	31658000	46279000	0	0	0	3204100	1147400	2056700	0	0	0	11483	848	10878	70522;70523;70524	95222;95223;95224	95224			3	
EGGQYGLVAACAAGGQGHAMIVEAYPK	1	Unmodified	2704.2738	0.27375538	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.633	68.735	3	3.7908E-21	60169	160511_QHF_FH_JSI11i_2	121.02	113.99			0.9219	0.95518	27.857	4	1	Median	1.7729	1.5601	NaN	1	1	Median	0.66532	0.82495	NaN	1	0	Median	0.94308	0.94588	NaN	1	0	Median	0.90119	0.96458	NaN	1	0	Median	144240000	74885000	69352000	16871000	4504600	12366000	22219000	15624000	6594600	63433000	32441000	30992000	41715000	22315000	19399000	11484	1848	10879	70525;70526;70527;70528	95225;95226;95227;95228;95229;95230;95231;95232	95229			8	
EGGSIPVTLTFQEATGK	1	Unmodified	1733.8836	0.88357984	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.943	2		1							1	1	1		74.978	74.365	2	6.4193E-07	67641	160511_QHF_FH_JSI11i_1	125.61	107.8			0.86957	0.77441	17.044	2	1	Median	1.0773	0.8736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70191	0.68649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106110000	56990000	49116000	48815000	23005000	25810000	0	0	0	57292000	33985000	23307000	0	0	0	11485	4160	10880	70529;70530;70531	95233;95234;95235	95233			3	
EGGTHQQLMEK	1	Unmodified	1256.5819	0.58193529	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		10.065	9.7079	3	0.00083218	7514	160511_QHF_FH_JSI9i_2	67.252	53.288			2.287	2.1211	31.507	2	2	Median	3.0624	2.6504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7079	1.6975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77504000	22993000	54512000	34124000	7080200	27044000	0	0	0	43380000	15912000	27467000	0	0	0	11486	2211	10881	70532;70533	95236;95237	95236			2	
EGGTVVYGGK	1	Unmodified	965.48181	0.48181054	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	17.2	13.813	2	1.1392E-07	11602	160511_QHF_FH_JSI9i_1	141.2	107.65			0.85262	0.90723	27.645	7	0	Median	1.2359	1.0301	NaN	1	0	Median	0.78938	0.92647	10.73	2	0	Median	1.0325	1.0133	15.644	2	0	Median	0.55546	0.60123	26.32	2	0	Median	1482300000	717570000	764760000	330510000	101190000	229320000	364220000	188810000	175420000	422580000	195320000	227260000	365010000	232250000	132760000	11487	1659	10882	70534;70535;70536;70537;70538;70539;70540	95238;95239;95240;95241;95242;95243;95244;95245;95246;95247;95248;95249	95245			12	
EGHLSPDIVAEQK	1	Unmodified	1421.7151	0.71505795	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.6	7	11	2				4			2	5	6	11	36.01	33.555	2;3	1.0385E-16	28651	160511_QHF_FH_JSI12i_2	209.85	176.47			0.93777	0.96989	29.981	21	3	Median	1.2699	1.0735	11.486	2	0	Median	0.78778	0.94914	8.2592	5	0	Median	1.1147	1.121	12.079	6	0	Median	0.66639	0.74321	37.848	8	3	Median	4284700000	2150000000	2134700000	504780000	179520000	325260000	1067200000	555230000	511940000	1690600000	796400000	894200000	1022200000	618810000	403340000	11488	1080	10883	70541;70542;70543;70544;70545;70546;70547;70548;70549;70550;70551;70552;70553;70554;70555;70556;70557;70558;70559;70560;70561;70562;70563;70564	95250;95251;95252;95253;95254;95255;95256;95257;95258;95259;95260;95261;95262;95263;95264;95265;95266;95267;95268;95269;95270;95271;95272;95273;95274;95275;95276;95277;95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288;95289	95256			37	
EGHPVTSEPSRPEPAVFK	1	Unmodified	1962.9799	0.97993984	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3.7	4.12		6	3						1	2	2	5	1	32.979	31.539	3;4	7.077E-06	27222	160511_QHF_FH_JSI11i_3	86.455	76.174			1.0905	1.0986	33.32	10	2	Median	1.8415	1.5702	5.1796	2	0	Median	0.9186	1.1289	11.876	2	0	Median	1.1139	1.0574	28.336	5	2	Median	0.57542	0.59245	NaN	1	0	Median	975090000	476280000	498820000	150400000	61796000	88600000	264270000	132540000	131730000	495670000	236440000	259230000	64765000	45501000	19264000	11489	2760	10884	70565;70566;70567;70568;70569;70570;70571;70572;70573;70574	95290;95291;95292;95293;95294;95295;95296;95297;95298;95299;95300;95301	95292			12	
EGHQVALLSGEMMVEQR	0	Unmodified	1912.9135	0.91351654	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	61.528	60.633	3	2.8866E-06	52182	160511_QHF_FH_JSI12i_2	83.253	64.657			0.7865	0.95129	29.772	3	2	Median	NaN	NaN	NaN	0	0	Median	0.7865	0.95129	NaN	1	0	Median	1.3465	1.3421	NaN	1	1	Median	0.65079	0.74183	NaN	1	1	Median	151280000	70832000	80452000	0	0	0	55649000	24716000	30934000	60506000	22688000	37818000	35129000	23429000	11701000	11490	5017;5423	10885	70575;70576;70577	95302;95303;95304	95302			3	
EGHSINTR	0	Unmodified	912.44134	0.44134271	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		4.5036	4.5036	3	0.018896	2149	160511_QHF_FH_JSI11i_3	28.096	15.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11491	4302	10886	70578	95305	95305			1	
EGIAASFAVK	1	Unmodified	991.53385	0.53384611	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	47.825	47.143	2	0.00021674	40472	160511_QHF_FH_JSI11i_2	92.051	50.622			1.1349	1.1103	17.366	5	4	Median	NaN	NaN	NaN	0	0	Median	0.89174	1.0376	NaN	1	1	Median	1.2519	1.2464	16.349	2	2	Median	1.0118	1.0628	24.48	2	1	Median	792200000	313490000	478710000	0	0	0	104890000	52357000	52538000	395670000	147070000	248600000	291640000	114070000	177570000	11492	5722	10887	70579;70580;70581;70582;70583;70584;70585	95306;95307;95308;95309;95310;95311;95312	95311			7	
EGIAFLYSLYR	0	Unmodified	1330.6921	0.69213767	2794	Q2NKX8	ERCC6L	DNA excision repair protein ERCC-6-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	88.56	79.174	2	8.7312E-05	42507	160513_QHF_FH_JSI12Kac_6	97.472	66.185			1.2421	1.2206	68.482	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1559	1.981	NaN	1	0	Median	0.71568	0.7521	NaN	1	1	Median	106600000	46855000	59742000	0	0	0	0	0	0	59004000	17327000	41677000	47593000	29529000	18065000	11493	2794	10888	70586;70587	95313;95314	95314			2	
EGIAQTVFLGLNR	0	Unmodified	1416.7725	0.77251325	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							3	3	4	3	80.626	79.99	2;3	6.7223E-53	71406	160511_QHF_FH_JSI11i_3	218.11	177.23			1.0012	1.0608	36.312	13	4	Median	2.0204	1.6776	17.375	3	1	Median	0.93696	1.116	6.2799	3	0	Plateau	1.0439	1.0003	13.031	4	1	Median	0.56561	0.57069	17.43	3	2	Median	548470000	282750000	265710000	78835000	26863000	51972000	130460000	65630000	64835000	231730000	120030000	111710000	107430000	70236000	37198000	11494	1629	10889	70588;70589;70590;70591;70592;70593;70594;70595;70596;70597;70598;70599;70600	95315;95316;95317;95318;95319;95320;95321;95322;95323;95324;95325;95326;95327;95328;95329;95330;95331;95332;95333;95334;95335;95336	95315			22	
EGICALGGTSELSSEGTQHSYSEEEK	1	Unmodified	2784.2032	0.20321202	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	51.732	51.005	3	1.7879E-113	46344	160511_QHF_FH_JSI12i_1	262.55	253.06			0.87196	0.86352	21.389	5	0	Median	1.6961	1.3853	NaN	1	0	Median	0.79172	0.95666	14.485	2	0	Median	0.87196	0.83939	NaN	1	0	Median	0.79989	0.85984	NaN	1	0	Median	1516400000	780230000	736170000	137190000	45017000	92170000	482070000	246540000	235540000	502690000	266450000	236240000	394450000	222220000	172230000	11495	1039	10890	70601;70602;70603;70604;70605	95337;95338;95339;95340;95341;95342;95343;95344;95345;95346;95347;95348;95349	95340			13	
EGIDPTPYYWYTDQR	0	Unmodified	1902.8424	0.84244331	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	74.252	74.07	2	3.0156E-08	67398	160511_QHF_FH_JSI12i_1	119.76	111.03			0.71438	0.8109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71438	0.8109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23796000	15734000	8061900	0	0	0	23796000	15734000	8061900	0	0	0	0	0	0	11496	375	10891	70606;70607	95350;95351	95350			2	
EGIDPTPYYWYTDQRK	1	Unmodified	2030.9374	0.93740633	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	66.096	65.309	3	1.2241E-07	57731	160511_QHF_FH_JSI10i_2	131.61	122.68			1.0918	1.1059	36.606	5	0	Median	1.9636	1.6961	NaN	1	0	Median	1.1547	1.3755	42.927	2	0	Median	1.0918	1.1059	NaN	1	0	Median	0.6877	0.77592	NaN	1	0	Median	718020000	321050000	396970000	122130000	40881000	81253000	233170000	108240000	124930000	231970000	100080000	131890000	130750000	71850000	58897000	11497	375	10892	70608;70609;70610;70611;70612	95352;95353;95354;95355;95356;95357;95358;95359;95360;95361;95362;95363	95363			12	
EGIDQSYQLLR	0	Unmodified	1320.6674	0.66737948	631	O94952	FBXO21	F-box only protein 21	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.329	27.017	2	0.029221	23941	160511_QHF_FH_JSI10i_1	40.002	17.261			3.8903	4.6009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.8903	4.6009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82980000	22023000	60957000	0	0	0	82980000	22023000	60957000	0	0	0	0	0	0	11498	631	10893	70613	95364	95364			1	
EGIESGDPGTDDGR	0	Unmodified	1403.5801	0.58008061	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1						2	3	1	17.438	14.962	2	7.0695E-10	12956	160511_QHF_FH_JSI11i_1	128.28	120.05			1.0053	0.96214	19.243	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1481	1.336	NaN	1	1	Median	0.99475	0.95743	0.6937	2	1	Median	NaN	NaN	NaN	0	0	Median	156620000	81461000	75156000	0	0	0	71942000	40312000	31630000	84675000	41149000	43526000	0	0	0	11499	2307	10894	70614;70615;70616;70617;70618;70619	95365;95366;95367;95368;95369;95370	95366			6	
EGIIHTLIVDNR	0	Unmodified	1378.7569	0.75686319	5044	Q9NVQ4	FAIM	Fas apoptotic inhibitory molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	1	2	58.591	53.749	2;3	1.9481E-05	47583	160511_QHF_FH_JSI11i_3	93.011	77.471			0.67392	0.79924	53.859	6	2	Median	1.7901	1.5506	NaN	1	0	Median	0.67392	0.79924	0.61931	2	0	Median	1.0341	0.96239	NaN	1	0	Median	0.37685	0.39088	9.9262	2	2	Median	149740000	79909000	69827000	9176800	2448500	6728200	41690000	24122000	17567000	67566000	30762000	36805000	31303000	22576000	8726700	11500	5044	10895	70620;70621;70622;70623;70624;70625;70626	95371;95372;95373;95374;95375;95376;95377;95378	95371			7	
EGIILFK	1	Unmodified	818.49019	0.49019038	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.53	3	4	3				2	5	2	3	5	5	6	67.404	62.064	2	0.0023955	53661	160511_QHF_FH_JSI11i_2	111.28	11.359			0.91344	0.96404	34.404	19	4	Median	1.5356	1.2995	25.799	3	1	Median	0.87388	1.054	11.927	5	1	Median	1.0679	1.0423	15.491	5	1	Median	0.60966	0.66909	33.629	6	1	Median	2326700000	1225100000	1101600000	437460000	196580000	240870000	648470000	359170000	289300000	812560000	409170000	403390000	428200000	260140000	168060000	11501	840	10896	70627;70628;70629;70630;70631;70632;70633;70634;70635;70636;70637;70638;70639;70640;70641;70642;70643;70644;70645	95379;95380;95381;95382;95383;95384;95385;95386;95387;95388;95389;95390;95391;95392;95393;95394;95395;95396;95397;95398;95399;95400;95401;95402;95403;95404;95405;95406;95407;95408;95409;95410;95411;95412	95399			34	
EGILPERAEEAK	1	Unmodified	1340.6936	0.69359423	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	2	5	3	28.301	27.844	2;3	3.6511E-05	23872	160511_QHF_FH_JSI11i_3	120.09	69.737			0.77413	0.84519	29.738	11	2	Median	1.3179	1.1116	NaN	1	0	Median	0.67533	0.83903	1.0349	2	0	Median	1.0831	1.0331	19.148	5	2	Median	0.62916	0.64392	12.272	3	0	Plateau	1167100000	667980000	499150000	53425000	22019000	31406000	276780000	183540000	93240000	451660000	225860000	225800000	385280000	236570000	148700000	11502	373	10897	70646;70647;70648;70649;70650;70651;70652;70653;70654;70655;70656	95413;95414;95415;95416;95417;95418;95419;95420;95421;95422;95423;95424;95425;95426;95427;95428;95429	95415			17	
EGILSPSELRK	1	Unmodified	1227.6823	0.68230126	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	9	6.13	1	1					3				2	1	2	71.663	64.979	2	0.0010696	60037	160511_QHF_FH_JSI12i_1	84.476	44.474			0.15942	0.1764	14.721	5	5	Median	NaN	NaN	NaN	0	0	Median	0.13409	0.16351	10.773	2	2	Median	0.17793	0.17466	NaN	1	1	Median	0.1848	0.20043	18.057	2	2	Median	1313000000	1034000000	278990000	0	0	0	196200000	169480000	26720000	33677000	28327000	5349800	1083100000	836150000	246920000	11503	5164	10898	70657;70658;70659;70660;70661	95430;95431;95432;95433;95434	95430			5	
EGIMNPEVGMK	1	Unmodified	1203.5628	0.56277975	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.639	45.146	2	0.0015955	40744	160511_QHF_FH_JSI11i_1	67.113	48.507			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11504	4551	10899	70662;70663;70664	95435;95436;95437	95435			3	
EGIPALDNFLDK	1	Unmodified	1330.6769	0.67688153	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.716	4	5	2							3	2	4	2	90.601	90.043	2	1.1183E-10	82038	160511_QHF_FH_JSI12i_1	143.96	96.763			0.87932	1.0161	30.433	9	0	Median	1.4625	1.2074	35.025	3	0	Median	0.86687	1.0273	4.172	2	0	Median	1.0249	1.0215	0.7548	2	0	Median	0.54157	0.58659	2.4464	2	0	Median	1745700000	889220000	856440000	328760000	122830000	205940000	502920000	241820000	261100000	536330000	281860000	254470000	377640000	242720000	134930000	11505	1033	10900	70665;70666;70667;70668;70669;70670;70671;70672;70673;70674;70675	95438;95439;95440;95441;95442;95443;95444;95445;95446;95447;95448;95449;95450;95451;95452;95453;95454;95455;95456;95457;95458;95459;95460;95461;95462;95463;95464;95465;95466;95467;95468;95469;95470;95471;95472;95473;95474;95475;95476	95449			39	
EGIPALDNFLDKL	1	Unmodified	1443.7609	0.76094551	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	102.07	101.98	2	2.5223E-10	82804	160511_QHF_FH_JSI9i_3	147.91	116.72			0.91487	1.0535	31.881	11	0	Median	1.6552	1.3447	5.7958	2	0	Median	0.91255	1.0669	1.3343	3	0	Median	1.0785	1.1077	12.628	3	0	Plateau	0.61416	0.6694	11.572	3	0	Plateau	15487000000	8037900000	7449300000	2602000000	951300000	1650700000	4432100000	2339300000	2092800000	4318200000	2076400000	2241900000	4134800000	2670900000	1463900000	11506	1033	10901	70676;70677;70678;70679;70680;70681;70682;70683;70684;70685;70686;70687	95477;95478;95479;95480;95481;95482;95483;95484;95485;95486;95487;95488;95489;95490;95491;95492;95493;95494;95495	95488			19	
EGIPGLYR	0	Unmodified	903.48142	0.48141661	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.5		5	1					1		2	1	2	2	47.377	44.659	2	0.0020638	38378	160511_QHF_FH_JSI11i_2	82.913	55.388			1.0617	1.0794	25.994	6	1	Median	1.3567	1.1308	5.9197	2	0	Median	0.89361	1.0744	NaN	1	0	Median	1.0617	1.0438	5.5545	2	0	Median	0.51949	0.58065	NaN	1	1	Median	612310000	306080000	306230000	142670000	57082000	85585000	147230000	78254000	68979000	199910000	95723000	104190000	122500000	75022000	47478000	11507	3071	10902	70688;70689;70690;70691;70692;70693;70694	95496;95497;95498;95499;95500;95501;95502	95500			7	
EGIPLIILAGK	1	Unmodified	1122.7012	0.70124579	1617	P48200	IREB2	Iron-responsive element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.841	91.33	2	4.1291E-05	80956	160511_QHF_FH_JSI10i_2	96.948	88.415			0.99048	1.0864	41.291	4	0	Median	1.6896	1.4994	NaN	1	0	Median	0.87012	1.0538	NaN	1	0	Median	1.1275	1.12	NaN	1	0	Median	0.52972	0.56213	NaN	1	0	Median	89759000	41110000	48649000	15720000	6708900	9010800	26699000	11899000	14799000	30068000	12145000	17922000	17273000	10356000	6916800	11508	1617	10903	70695;70696;70697;70698	95503;95504;95505;95506;95507	95507			5	
EGIPLPTK	1	Unmodified	853.49092	0.49091866	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	42.761	42.106	2	0.0067573	38345	160511_QHF_FH_JSI12i_1	61.602	26.164			0.97423	1.0419	34.582	4	0	Median	1.6366	1.3443	NaN	1	0	Median	0.87034	1.0047	NaN	1	0	Median	1.0905	1.0805	NaN	1	0	Median	0.56645	0.5946	NaN	1	0	Median	413310000	230210000	183100000	80617000	33733000	46884000	120760000	74602000	46154000	102390000	47665000	54725000	109550000	74207000	35339000	11509	5575	10904	70699;70700;70701;70702	95508;95509	95508			2	
EGIPPDQQR	0	Unmodified	1038.5094	0.50942227	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	13.214	12.833	2	5.283E-08	10787	160511_QHF_FH_JSI10i_1	143.61	108.79			1.0735	1.0531	29.816	5	0	Median	1.7037	1.4177	NaN	1	0	Median	0.85167	1.0184	NaN	1	0	Median	1.0938	1.1178	8.4243	2	0	Median	0.59549	0.63565	NaN	1	0	Median	6771200000	3363200000	3408000000	1653100000	617280000	1035800000	1967600000	1045400000	922210000	1768800000	852470000	916350000	1381600000	848070000	533560000	11510	2042	10905	70703;70704;70705;70706;70707	95510;95511;95512;95513;95514;95515;95516;95517;95518;95519;95520;95521;95522;95523;95524;95525;95526;95527;95528;95529;95530;95531;95532;95533;95534;95535;95536;95537;95538;95539;95540;95541;95542;95543;95544;95545;95546;95547;95548;95549;95550;95551;95552;95553;95554;95555;95556;95557;95558;95559;95560;95561;95562;95563;95564;95565;95566;95567;95568;95569;95570;95571;95572;95573;95574;95575;95576;95577;95578;95579;95580;95581;95582;95583;95584;95585	95560			76	
EGIPPDQQRLIFAGK	1	Unmodified	1667.8995	0.89950468	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	55.245	55.165	3	0.00065851	47438	160511_QHF_FH_JSI12i_3	72.175	61.12			0.21769	0.21954	29.386	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14395	0.13706	15.725	2	2	Median	0.21769	0.21954	NaN	1	1	Median	140720000	118100000	22622000	0	0	0	0	0	0	56885000	51752000	5133400	83837000	66349000	17489000	11511	2042	10906	70708;70709;70710	95586;95587;95588;95589	95589			4	
EGIPPQQQR	0	Unmodified	1051.5411	0.54105675	2718	Q15843	NEDD8	NEDD8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	11.614	11.155	2	0.00057219	8519	160511_QHF_FH_JSI9i_1	78.178	54.75			0.58618	0.61758	39.083	3	0	Plateau	1.5106	1.2571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0386	1.0161	NaN	1	0	Median	0.56955	0.5892	NaN	1	0	Median	300790000	149950000	150840000	97954000	38353000	59601000	0	0	0	100170000	48197000	51972000	102660000	63399000	39264000	11512	2718	10907	70711;70712;70713	95590;95591;95592;95593;95594	95594			5	
EGIPVMR	0	Unmodified	800.42146	0.42145889	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.924	32.584	2	0.032473	29092	160511_QHF_FH_JSI10i_1	52.683	26.574			0.72618	0.84492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72618	0.84492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41412000	26942000	14470000	0	0	0	41412000	26942000	14470000	0	0	0	0	0	0	11513	2569	10908	70714	95595	95595			1	
EGIREETVSLR	0	Unmodified	1287.6783	0.67827852	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.14	0.35		6	1							2	3	2		30.352	29.486	2;3	0.0038502	25793	160511_QHF_FH_JSI10i_2	70.1	39.026			0.97629	1.0723	19.322	7	0	Median	1.618	1.3732	0.89338	2	0	Median	0.8746	0.82502	13.817	3	0	Plateau	1.1236	1.1217	18.943	2	0	Median	NaN	NaN	NaN	0	0	Median	542720000	286180000	256540000	154090000	56499000	97586000	236980000	133490000	103490000	151650000	96193000	55461000	0	0	0	11514	1177	10909	70715;70716;70717;70718;70719;70720;70721	95596;95597;95598;95599;95600;95601;95602	95601			7	
EGISQEALHTQMLTAVQEISHLIEPLANAAR	0	Unmodified	3369.7351	0.73508847	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.54	103.55	4	1.7105E-17	90279	160511_QHF_FH_JSI12i_3	92.121	85.377			0.60191	0.61006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60191	0.61006	NaN	1	1	Median	34566000	26492000	8074200	0	0	0	0	0	0	0	0	0	34566000	26492000	8074200	11515	5616	10910	70722	95603	95603			1	
EGITTYFSGNCTMEDAK	1	Unmodified	1922.8026	0.80262869	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.862	61.212	2	0.00023313	55743	160511_QHF_FH_JSI12i_1	84.365	78.641			0.50866	0.50495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50866	0.50495	NaN	1	1	Median	14305000	10265000	4040100	0	0	0	0	0	0	0	0	0	14305000	10265000	4040100	11516	5119	10911	70723	95604	95604			1	
EGITVYSMQFGGYAK	1	Unmodified	1649.7759	0.77594365	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		1	2	4	1	75.605	73.239	2	1.0099E-14	67111	160511_QHF_FH_JSI10i_1	161.19	137.81			0.77682	0.86384	24.917	6	4	Median	1.1323	0.91083	NaN	1	1	Median	0.7353	0.86618	NaN	1	0	Median	0.70543	0.86151	21.386	3	2	Plateau	0.45802	0.50326	NaN	1	1	Median	191280000	106250000	85030000	19504000	6779700	12724000	52531000	25715000	26816000	88375000	53542000	34832000	30873000	20216000	10657000	11517	4965	10912	70724;70725;70726;70727;70728;70729;70730;70731	95605;95606;95607;95608;95609;95610;95611;95612;95613;95614	95608			10	
EGIVALR	0	Unmodified	756.44939	0.4493882	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		31.936	31.651	2	0.010359	26762	160511_QHF_FH_JSI11i_2	65.672	8.5697			0.76871	0.8186	2.5428	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6944	0.80402	NaN	1	1	Median	0.85097	0.83346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	191300000	102510000	88796000	0	0	0	100380000	57677000	42706000	90920000	44831000	46090000	0	0	0	11518	1494	10913	70732;70733;70734	95615;95616;95617	95617			3	
EGIVALRR	0	Unmodified	912.5505	0.55049923	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.14	21.843	2	0.0050747	17576	160511_QHF_FH_JSI9i_3	85.265	31.711			2.1237	1.7261	NaN	1	1	Median	2.1237	1.7261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39412000	12107000	27305000	39412000	12107000	27305000	0	0	0	0	0	0	0	0	0	11519	1494	10914	70735	95618	95618			1	
EGIVQTEQIR	0	Unmodified	1171.6197	0.619701	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.4	6.05	2					2	1				2	2	1	36.152	30.421	2	0.028971	27052	160511_QHF_FH_JSI10i_1	58.246	39.807			0.93114	1.0689	28.996	5	2	Median	NaN	NaN	NaN	0	0	Median	0.9077	1.0759	3.401	2	0	Median	1.176	1.1301	7.8814	2	1	Median	0.56096	0.5821	NaN	1	1	Median	103850000	65944000	37902000	0	0	0	60756000	40693000	20063000	7860600	3255700	4604900	35230000	21995000	13234000	11520	3090	10915	70736;70737;70738;70739;70740	95619;95620;95621;95622	95620			3	
EGIVTATEQEVK	1	Unmodified	1302.6667	0.66671078	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	5.55	2	2			1	2				1	4	1	1	42.162	37.841	2	4.4191E-23	33512	160511_QHF_FH_JSI10i_1	179.42	153.8			0.55381	0.57748	38.834	6	2	Median	0.58814	0.48434	NaN	1	1	Median	0.64557	0.76093	37.46	4	0	Median	NaN	NaN	NaN	0	0	Median	0.44689	0.47175	NaN	1	1	Median	2356400000	1761700000	594750000	787950000	512550000	275390000	1548900000	1232800000	316080000	9539800	9539800	0	10097000	6819900	3276800	11521	2328	10916	70741;70742;70743;70744;70745;70746;70747	95623;95624;95625;95626;95627;95628;95629;95630;95631	95624			9	
EGKIFSNTDPDK	2	Acetyl (K)	1391.6569	0.65687437	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		45.679	36.376	2	0.0065171	20423	160513_QHF_FH_JSI11Kac_3	61.344	38.024			0.66502	0.63191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66502	0.63191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2107100	1229200	877860	0	0	0	0	0	0	2107100	1229200	877860	0	0	0	11522	2858	10917	70748	95632	95632	2699		1	
EGKLIMGIGHR	1	Acetyl (K)	1251.6758	0.6757761	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	54.885	45.497	2;3	0.00054786	24682	160513_QHF_FH_JSI11Kac_6	72.958	57.756			0.71476	0.76313	61.415	6	2	Median	NaN	NaN	NaN	0	0	Median	0.81486	0.97084	26.127	2	0	Median	0.85842	0.82221	18.465	2	0	Median	0.29798	0.32188	60.525	2	2	Median	81061000	45309000	35752000	0	0	0	47368000	22240000	25128000	22676000	13312000	9364600	11017000	9757000	1259600	11523	1798	10918	70749;70750;70751;70752;70753;70754;70755	95633;95634;95635;95636;95637;95638;95639	95634	1811		7	
EGKPEIEGKPESEGEPGSETR	2	Unmodified	2241.0397	0.039699148	4045	Q96EI5	TCEAL4	Transcription elongation factor A protein-like 4	yes	yes	0	0	0	2		By MS/MS			2	0		2									2			19.62	18.832	3;4	0.0003694	16127	160511_QHF_FH_JSI10i_2	57.496	42.567			0.63739	0.80346	78.873	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63739	0.80346	78.873	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36397000	21388000	15009000	0	0	0	36397000	21388000	15009000	0	0	0	0	0	0	11524	4045	10919	70756;70757	95640;95641	95641			2	
EGKPLLK	2	Acetyl (K)	825.496	0.49600404	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		38.025	29.107	2	0.048639	16932	160513_QHF_FH_JSI11Kac_3	60.682	8.2791			0.6771	0.73094	98.168	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2381	1.4634	NaN	1	0	Median	0.37028	0.36511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23113000	15352000	7761600	0	0	0	10533000	5718200	4814600	12580000	9633400	2947000	0	0	0	11525	1033	10920	70758;70759	95642	95642			1	
EGKPPISVK	2	Unmodified	953.55458	0.55458155	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	1		By matching		By MS/MS	2.33	0.471		2	1								1		2	16.834	16.288	3	0.026172	12779	160511_QHF_FH_JSI12i_3	33.229	19.876			0.66717	0.68592	26.455	3	0	Median	NaN	NaN	NaN	0	0	Median	0.7952	0.96892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59638	0.62864	12.331	2	0	Median	593020000	362780000	230240000	0	0	0	126610000	73326000	53279000	0	0	0	466410000	289450000	176960000	11526	4524	10921	70760;70761;70762	95643	95643			1	
EGKPTIVEEDDPELFK	2	Unmodified	1844.9044	0.90437487	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								2	3	3	3	57.89	57.18	2;3	1.0126E-05	49557	160511_QHF_FH_JSI11i_2	110.22	99.161			0.90488	0.87736	18.508	11	1	Median	1.1434	0.94802	21.927	2	0	Median	0.90488	1.0977	3.6675	3	1	Median	0.91498	0.87626	11.57	3	0	Median	0.60834	0.7178	20.451	3	0	Plateau	1371700000	709870000	661830000	229700000	99458000	130240000	395090000	220730000	174370000	370030000	185790000	184230000	376890000	203890000	173000000	11527	587	10922	70763;70764;70765;70766;70767;70768;70769;70770;70771;70772;70773	95644;95645;95646;95647;95648;95649;95650;95651;95652;95653;95654;95655;95656;95657;95658;95659	95658			15	
EGKTDYYAR	1	Acetyl (K)	1143.5197	0.51965261	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		28.212	20.214	2	0.010496	11825	160513_QHF_FH_JSI10Kac_3	61.78	53.95			0.78083	0.85048	22.94	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84948	1.0003	NaN	1	0	Median	0.71773	0.72313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9111800	4667000	4444900	0	0	0	3517100	1822000	1695100	5594800	2845000	2749800	0	0	0	11528	1590	10923	70774;70775	95660;95661;95662	95662	1603		3	
EGKYIPLPQR	1	Acetyl (K)	1241.6768	0.67682195	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	0.639						2	4	1		1	3	1	2	63.482	53.12	2	3.1503E-08	29681	160513_QHF_FH_JSI11Kac_4	138.98	98.624			0.85352	1.0155	115.65	7	2	Median	1.1922	1.0191	NaN	1	1	Median	0.88169	1.0351	148.74	3	1	Median	0.85352	0.84685	NaN	1	0	Median	0.40669	0.44154	2.4381	2	0	Median	90684000	49688000	40997000	1424600	409120	1015500	34790000	14634000	20156000	30443000	17428000	13016000	24026000	17217000	6809200	11529	3801	10924	70776;70777;70778;70779;70780;70781;70782	95663;95664;95665;95666;95667;95668;95669;95670;95671	95667	2942		9	
EGLDEVAGIINDAK	1	Unmodified	1442.7253	0.72528829	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	77.944	77.513	3	0.0017222	70560	160511_QHF_FH_JSI11i_1	51.643	46.037			1.3131	1.2969	27.574	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6269	1.576	NaN	1	0	Median	1.0598	1.0671	NaN	1	0	Median	43488000	19642000	23846000	0	0	0	0	0	0	18631000	7352900	11278000	24857000	12289000	12568000	11530	2485	10925	70783;70784	95672;95673	95672			2	
EGLDIYKK	2	Unmodified	964.52295	0.52294707	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	27.819	26.978	3	0.0079933	23491	160511_QHF_FH_JSI10i_2	37.191	10.589			0.73338	0.80327	67.024	3	2	Median	NaN	NaN	NaN	0	0	Median	0.73885	0.85339	8.5594	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24623	0.26856	NaN	1	1	Median	96115000	59389000	36726000	0	0	0	77286000	44987000	32299000	0	0	0	18829000	14402000	4427100	11531	2425	10926	70785;70786;70787	95674;95675;95676	95676			3	
EGLEFAVIR	0	Unmodified	1032.5604	0.56039521	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	66.79	65.894	2	5.7237E-05	56711	160511_QHF_FH_JSI12i_2	116.25	93.231			1.3973	1.3908	42.935	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81456	0.9998	NaN	1	0	Median	1.3973	1.3908	NaN	1	0	Median	0.55271	0.59353	NaN	1	1	Median	93055000	47588000	45467000	0	0	0	23596000	11599000	11997000	45009000	20537000	24473000	24449000	15452000	8997700	11532	5694	10927	70788;70789;70790;70791	95677;95678;95679;95680	95677			4	
EGLEIVK	1	Unmodified	786.44872	0.4487195	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.65	4.81	8	6					3			4	5	5	3	45.674	42.976	2	0.0034484	30594	160511_QHF_FH_JSI9i_1	104.45	29.137			0.33079	0.32145	86.243	15	8	Median	0.33378	0.2834	88.334	3	2	Median	0.46239	0.56869	94.965	4	2	Median	0.33079	0.33619	95.319	5	3	Median	0.28195	0.32145	102.72	3	1	Median	6359500000	3962900000	2396600000	1175900000	566620000	609320000	1722800000	1132300000	590480000	1815400000	1116800000	698510000	1645500000	1147200000	498280000	11533	1024	10928	70792;70793;70794;70795;70796;70797;70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808	95681;95682;95683;95684;95685;95686;95687;95688;95689;95690;95691;95692;95693;95694;95695;95696;95697;95698;95699;95700;95701;95702;95703;95704;95705;95706;95707	95700			27	
EGLELLK	1	Unmodified	800.46437	0.46436956	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.19	4	5	4			1	4	5		5	5	6	7	52.563	46.887	2	0.001442	42786	160511_QHF_FH_JSI9i_2	120.65	48.696			0.85731	0.92538	32.773	22	7	Median	1.4945	1.2716	12.531	5	2	Median	0.7837	0.90834	22.274	5	1	Median	0.97192	0.97876	35.728	6	2	Median	0.68331	0.72508	39.081	6	2	Median	44366000000	19856000000	24510000000	9008300000	3179300000	5829000000	11662000000	5144400000	6517700000	13402000000	5428500000	7973500000	10293000000	6103700000	4189600000	11534	854	10929	70809;70810;70811;70812;70813;70814;70815;70816;70817;70818;70819;70820;70821;70822;70823;70824;70825;70826;70827;70828;70829;70830;70831	95708;95709;95710;95711;95712;95713;95714;95715;95716;95717;95718;95719;95720;95721;95722;95723;95724;95725;95726;95727;95728;95729;95730;95731;95732;95733;95734;95735;95736;95737;95738;95739;95740;95741;95742;95743;95744;95745;95746;95747;95748;95749;95750;95751;95752;95753;95754;95755;95756;95757;95758;95759;95760;95761;95762	95741			55	
EGLELLKTAIGK	2	Acetyl (K)	1312.7602	0.76021723	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15	0								4		1	1	1	1	86.522	76.079	2	6.1135E-31	39960	160513_QHF_FH_JSI11Kac_5	184.36	117.74			0.49717	0.5379	81.837	4	0	Median	1.3518	1.1291	NaN	1	0	Median	0.85121	1.0144	NaN	1	0	Median	0.29039	0.28523	NaN	1	0	Median	0.22479	0.23935	NaN	1	0	Median	115840000	84433000	31404000	3170900	1446900	1724000	8759400	4301200	4458200	100280000	75792000	24490000	3624800	2893200	731580	11535	854	10930	70832;70833;70834;70835	95763;95764;95765;95766	95765	520		4	
EGLELPEDEEEK	1	Unmodified	1415.6304	0.63038485	898;880;2869;2871	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	5.54	7	4	5	2	6	6		3		7	12	7	7	47.976	42.607	2	1.7756E-53	40226	160511_QHF_FH_JSI11i_1	221.52	212.56			0.87518	0.93211	23.458	23	7	Median	1.195	1.0643	23.003	3	1	Median	0.77099	0.93211	20.725	9	3	Median	0.89404	0.88317	11.733	4	1	Linear	0.70192	0.75955	17.798	7	2	Median	78029000000	38205000000	39824000000	10329000000	4403500000	5925300000	28425000000	13839000000	14587000000	15020000000	6747700000	8271900000	24255000000	13215000000	11040000000	11536	898;880;2871;2869	10931	70836;70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847;70848;70849;70850;70851;70852;70853;70854;70855;70856;70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868	95767;95768;95769;95770;95771;95772;95773;95774;95775;95776;95777;95778;95779;95780;95781;95782;95783;95784;95785;95786;95787;95788;95789;95790;95791;95792;95793;95794;95795;95796;95797;95798;95799;95800;95801;95802;95803;95804;95805;95806;95807;95808;95809;95810;95811;95812;95813;95814;95815;95816;95817;95818;95819;95820;95821;95822;95823;95824;95825;95826;95827;95828;95829;95830	95771			63	
EGLELPEDEEEKK	2	Unmodified	1543.7253	0.72534787	898;880;2869;2871	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				3	3	3	2	39.152	36.806	2;3	6.8332E-17	32302	160511_QHF_FH_JSI9i_1	140.78	110.39			0.8413	0.83724	18.976	10	1	Median	1.219	1.0026	32.671	2	0	Median	0.66658	0.78511	5.9061	3	0	Median	0.95376	0.85376	15.468	3	1	Plateau	0.7467	0.77583	20.979	2	0	Median	4061700000	2231700000	1830000000	764940000	312650000	452290000	1184700000	776370000	408340000	1007600000	531810000	475770000	1104400000	610860000	493580000	11537	898;880;2871;2869	10932	70869;70870;70871;70872;70873;70874;70875;70876;70877;70878;70879	95831;95832;95833;95834;95835;95836;95837;95838;95839;95840;95841;95842;95843;95844;95845	95844			15	
EGLELPEDEEEKK	2	Acetyl (K)	1585.7359	0.73591255	898;880;2869;2871	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.471					4	2					1	2	3	59.413	50.018	2;3	1.5361E-11	22374	160513_QHF_FH_JSI12Kac_2	129.16	103.11			0.55393	0.57571	45.547	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95705	1.1456	NaN	1	0	Median	0.63199	0.61981	NaN	1	0	Median	0.42054	0.45458	22.972	2	0	Median	43839000	28199000	15640000	0	0	0	8765000	4948800	3816200	8352600	6367500	1985100	26722000	16883000	9839000	11538	898;880;2871;2869	10932	70880;70881;70882;70883;70884;70885	95846;95847;95848;95849;95850;95851;95852;95853	95852	600		8	
EGLEYIPLR	0	Unmodified	1088.5866	0.58660996	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		64.069	63.448	2	0.00035439	57304	160511_QHF_FH_JSI10i_1	82.279	69.012			0.80659	0.86156	2.3814	3	0	Plateau	1.0481	0.84301	NaN	1	0	Median	0.71611	0.86156	NaN	1	0	Median	0.9085	0.88408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145580000	84928000	60653000	19641000	10755000	8886100	67166000	42188000	24978000	58775000	31985000	26789000	0	0	0	11539	2664	10933	70886;70887;70888	95854;95855;95856;95857;95858;95859	95856			6	
EGLGASEAVADIK	1	Unmodified	1258.6405	0.64049603	3612	Q8NC60	NOA1	Nitric oxide-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.998	47.317	2	2.8079E-12	42590	160511_QHF_FH_JSI10i_1	120.03	81.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11540	3612	10934	70889;70890;70891;70892	95860;95861;95862;95863	95862			4	
EGLLAIFK	1	Unmodified	889.5273	0.52730417	1065;1422	P14923;P35222	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.69	6.43		4	3				1	4	4	4	4	4	4	81.857	76.232	2	0.00027047	70334	160511_QHF_FH_JSI11i_2	114.6	57.043			1.12	1.1084	50.562	16	1	Median	1.4053	1.2003	75.165	4	1	Median	0.81955	0.97484	25.868	4	0	Median	1.1709	1.1391	2.4167	4	0	Median	0.60074	0.65091	17.051	4	0	Median	941500000	485320000	456180000	201220000	83791000	117430000	206460000	109800000	96656000	317600000	156340000	161270000	216210000	135390000	80825000	11541	1065;1422	10935	70893;70894;70895;70896;70897;70898;70899;70900;70901;70902;70903;70904;70905;70906;70907;70908	95864;95865;95866;95867;95868;95869;95870;95871;95872;95873;95874;95875;95876;95877;95878;95879;95880;95881;95882;95883;95884;95885;95886;95887;95888;95889	95879			26	
EGLLDPNVK	1	Unmodified	983.52876	0.52876073	331	O43414	ERI3	ERI1 exoribonuclease 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.698	40.061	2	0.0039802	35420	160511_QHF_FH_JSI9i_1	57.96	25.119			0.64013	0.69143	29.003	4	1	Median	1.0255	0.83296	NaN	1	0	Median	0.59525	0.70491	NaN	1	0	Median	0.68839	0.67821	NaN	1	0	Median	0.41526	0.42365	NaN	1	1	Median	437810000	259690000	178120000	81886000	36527000	45359000	133480000	89646000	43839000	137050000	76838000	60210000	85389000	56676000	28712000	11542	331	10936	70909;70910;70911;70912	95890;95891;95892;95893	95893			4	
EGLLGLQNLLK	1	Unmodified	1196.7129	0.71287311	3266;476	O75122;Q7Z460	CLASP2;CLASP1	CLIP-associating protein 2;CLIP-associating protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	94.837	94.603	2	4.5855E-07	83843	160511_QHF_FH_JSI10i_2	116.37	82.185			1.1001	1.1377	24.058	6	0	Median	1.5418	1.3521	NaN	1	0	Median	0.8654	1.0709	NaN	1	0	Median	1.2225	1.1967	7.9824	2	0	Median	0.81279	0.88498	36.356	2	0	Median	117070000	64405000	52667000	18278000	9071200	9206400	24626000	13063000	11562000	41390000	23758000	17633000	32778000	18513000	14265000	11543	476;3266	10937	70913;70914;70915;70916;70917;70918	95894;95895;95896;95897;95898;95899;95900;95901;95902;95903	95902			9	
EGLLLWCQR	0	Unmodified	1173.5965	0.59646314	361;1021	O43707;Q08043;P12814;P35609	ACTN4;ACTN3;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.22	6.46		4						5		2	2	3	2	75.257	68.02	2	5.0313E-10	60899	160511_QHF_FH_JSI11i_2	130.22	81.66			0.92948	0.96856	32.688	6	2	Median	0.91293	0.73586	NaN	1	1	Median	0.65209	0.79062	18.682	2	0	Median	1.4473	1.4592	8.8528	2	1	Median	0.94633	1.0397	NaN	1	0	Median	294160000	150040000	144120000	2552700	1453300	1099400	98370000	61158000	37211000	191560000	86541000	105020000	1669600	883280	786270	11544	361;1021	10938	70919;70920;70921;70922;70923;70924;70925;70926;70927	95904;95905;95906;95907;95908;95909;95910;95911;95912;95913	95909			10	
EGLMLDSHEELYK	1	Unmodified	1562.7287	0.72865911	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	54.789	53.767	2;3	4.3991E-06	46087	160511_QHF_FH_JSI12i_2	124.42	110			0.53577	0.6116	29.162	7	6	Median	0.74421	0.63498	5.3051	2	2	Median	0.52992	0.65991	0.89472	2	1	Median	0.56935	0.57502	NaN	1	1	Median	0.31689	0.35105	1.7886	2	2	Median	581720000	369850000	211870000	121110000	67974000	53140000	152860000	85375000	67482000	70322000	42985000	27337000	237430000	173520000	63912000	11545	2517	10939	70928;70929;70930;70931;70932;70933;70934	95914;95915;95916;95917;95918;95919;95920;95921;95922	95915			9	
EGLNLPSQLAHR	0	Unmodified	1333.7102	0.71024735	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			49.684	48.492	3	5.8288E-05	42591	160511_QHF_FH_JSI9i_2	58.781	52.345			1.2727	1.498	32.627	3	0	Median	2.225	1.864	NaN	1	0	Median	1.0058	1.2124	29.924	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212480000	103230000	109260000	67729000	21584000	46145000	144750000	81641000	63112000	0	0	0	0	0	0	11546	1506	10940	70935;70936;70937	95923;95924;95925	95924			2	
EGLPEDGTLYR	0	Unmodified	1248.5986	0.59863121	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		44.425	43.624	2	0.0045529	38743	160511_QHF_FH_JSI9i_1	64.297	48.044			1.5003	1.3346	21.116	2	2	Median	1.4213	1.1495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5837	1.5495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	135890000	67311000	68583000	50951000	24250000	26700000	0	0	0	84944000	43061000	41883000	0	0	0	11547	3756	10941	70938;70939	95926;95927	95927			2	
EGLPVALDK	1	Unmodified	940.52295	0.52294707	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	1	3	52.185	48.943	2	1.0509E-05	44382	160511_QHF_FH_JSI11i_1	105.52	85			0.73382	0.82981	24.099	4	0	Median	1.5018	1.2316	NaN	1	0	Median	0.77972	0.92578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68663	0.74102	0.52795	2	0	Median	1272300000	649130000	623120000	455040000	185840000	269210000	456450000	245350000	211110000	0	0	0	360750000	217950000	142800000	11548	5486	10942	70940;70941;70942;70943;70944;70945	95928;95929;95930;95931;95932;95933;95934	95928			7	
EGLQNMEAR	0	Unmodified	1046.4815	0.48149296	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	3	2	1	21.966	19.316	2	1.144E-05	16784	160511_QHF_FH_JSI11i_1	110.88	44.453			1.0968	1.2391	16.33	8	0	Median	1.6562	1.3752	5.2197	2	0	Median	1.0526	1.2678	3.3175	3	0	Median	1.1484	1.1216	5.6772	2	0	Median	0.79757	0.84054	NaN	1	0	Median	2716300000	1132100000	1584300000	639560000	203650000	435910000	714500000	328240000	386260000	750720000	298230000	452500000	611550000	301970000	309580000	11549	1386	10943	70946;70947;70948;70949;70950;70951;70952;70953	95935;95936;95937;95938;95939;95940;95941;95942;95943	95935			9	
EGLQNMEAR	0	Oxidation (M)	1062.4764	0.47640759	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	14.569	9.8838	2	0.02633	4224	160513_QHF_FH_JSI12Kac_3	43.808	16.554			1.0786	1.0255	36.825	5	2	Median	2.1907	1.8117	NaN	1	1	Median	0.77667	0.91535	NaN	1	0	Median	1.0786	1.0255	NaN	1	0	Median	0.83986	0.89972	42.299	2	1	Median	204930000	76171000	128760000	99234000	34644000	64590000	3630400	1879800	1750700	4672600	2273100	2399500	97396000	37375000	60022000	11550	1386	10943	70954;70955;70956;70957;70958	95944;95945;95946;95947;95948;95949	95946			6	
EGLRPLEEVMQK	1	Unmodified	1427.7442	0.74424959	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		56.65	56.65	3	0.020439	50194	160511_QHF_FH_JSI11i_3	27.33	21.956			1.4603	1.3917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4603	1.3917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61252000	29246000	32006000	0	0	0	0	0	0	61252000	29246000	32006000	0	0	0	11551	5100	10944	70959	95950	95950			1	
EGLSLIYEQLK	1	Unmodified	1291.7024	0.702368	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.937	77.109	2	9.941E-05	67693	160511_QHF_FH_JSI11i_2	87.308	29.758			0.76943	0.72396	23.901	4	0	Median	0.81634	0.71683	NaN	1	0	Median	0.79252	0.96586	NaN	1	0	Median	0.74701	0.73117	NaN	1	0	Median	0.4924	0.53804	NaN	1	0	Median	179210000	104930000	74281000	35968000	18115000	17854000	35581000	16864000	18717000	49718000	30950000	18768000	57945000	39002000	18943000	11552	4829	10945	70960;70961;70962;70963	95951;95952;95953;95954	95953			4	
EGLTSIEEVTK	1	Unmodified	1204.6187	0.61869795	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	52.576	49.012	2	5.3259E-06	44102	160511_QHF_FH_JSI11i_1	106.4	47.701			0.82905	0.9676	21.327	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82905	0.9676	NaN	1	0	Median	1.2591	1.218	NaN	1	0	Median	0.78006	0.79543	NaN	1	0	Median	230500000	150490000	80009000	0	0	0	114770000	79283000	35483000	3088600	1641100	1447500	112650000	69569000	43078000	11553	2636	10946	70964;70965;70966;70967	95955;95956;95957;95958;95959;95960;95961	95955			7	
EGLVMVEVRK	1	Unmodified	1158.6431	0.64307898	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.73	6.7		3	2					1	5	2	3	2	4	46.035	40.93	2;3	2.1621E-11	34675	160511_QHF_FH_JSI12i_3	152.11	93.516			0.95471	1.051	31.286	10	1	Median	1.421	1.2064	6.0287	2	0	Median	1.0394	1.2267	10.547	2	1	Median	1.1625	1.1676	26.18	2	0	Median	0.64548	0.65966	10.654	4	0	Median	674180000	379240000	294930000	58366000	22605000	35762000	50830000	33083000	17747000	78823000	33417000	45406000	486160000	290140000	196020000	11554	3213	10947	70968;70969;70970;70971;70972;70973;70974;70975;70976;70977;70978	95962;95963;95964;95965;95966;95967;95968;95969;95970;95971;95972;95973	95968			12	
EGLVPVSEDPVAIK	1	Unmodified	1451.7872	0.78716026	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.792	68.224	2	0.00069392	62186	160511_QHF_FH_JSI12i_1	69.346	62.801			1.2221	1.1467	21.494	4	0	Median	1.3513	1.1184	NaN	1	0	Median	0.99934	1.1641	NaN	1	0	Median	1.8324	1.7456	NaN	1	0	Median	1.1053	1.1296	NaN	1	0	Median	463470000	185330000	278150000	88778000	27717000	61062000	155310000	55995000	99317000	107030000	48755000	58273000	112360000	52860000	59495000	11555	2567	10948	70979;70980;70981;70982	95974;95975;95976;95977;95978	95975			5	
EGLYQYK	1	Unmodified	899.43888	0.43888309	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	24.223	24.061	2	0.026947	20098	160511_QHF_FH_JSI12i_2	46.663	17.09			1.0486	1.0121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0486	1.0121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	304310000	179450000	124860000	0	0	0	0	0	0	304310000	179450000	124860000	0	0	0	11556	2502	10949	70983;70984	95979;95980	95980			2	
EGMAALQSDPWQQELYR	0	Unmodified	2020.9313	0.93127509	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	2	1	78.233	77.759	2	2.1638E-32	69179	160511_QHF_FH_JSI9i_1	147.26	116.11			0.78472	0.84238	16.854	4	1	Median	1.3673	1.1079	NaN	1	0	Median	0.72273	0.85824	NaN	1	0	Median	0.85203	0.82681	NaN	1	0	Median	0.71651	0.74485	NaN	1	1	Median	217690000	114450000	103240000	50326000	21174000	29151000	59475000	36348000	23127000	59575000	32897000	26678000	48312000	24027000	24284000	11557	1675	10950	70985;70986;70987;70988;70989;70990;70991;70992	95981;95982;95983;95984;95985;95986;95987;95988;95989;95990;95991	95988			11	
EGMDVVK	1	Unmodified	776.37384	0.37383999	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	6.14	5.94	4					3				1	2	2	2	21.817	18.347	2	0.010891	15966	160511_QHF_FH_JSI10i_1	72.875	54.069			0.87494	0.94868	24.431	7	0	Median	1.762	1.4347	NaN	1	0	Median	0.90899	1.066	16.485	2	0	Median	0.97575	0.9403	17.898	2	0	Median	0.71025	0.76181	9.6912	2	0	Median	1657800000	806930000	850880000	433970000	166840000	267130000	385700000	182640000	203060000	462260000	226980000	235280000	375870000	230460000	145410000	11558	1348	10951	70993;70994;70995;70996;70997;70998;70999	95992;95993;95994;95995	95993			4	
EGMDVVKK	2	Acetyl (K);Oxidation (M)	962.47428	0.47428232	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	1	1			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	17.143	9.9234	2	0.014437	6058	160513_QHF_FH_JSI12Kac_2	61.962	34.708			0.55488	0.56738	9.0104	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54992	0.53236	NaN	1	0	Median	0.55988	0.6047	NaN	1	0	Median	12911000	8299800	4611400	0	0	0	0	0	0	9839000	6481400	3357700	3072200	1818500	1253700	11559	1348	10952	71000;71001	95996;95997	95997	1285	991	2	
EGMDVVKK	2	Acetyl (K)	946.47937	0.4793677	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	34.623	26.157	2	0.052306	15162	160513_QHF_FH_JSI12Kac_3	60.91	33.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11560	1348	10952	71002	95998	95998	1285		1	
EGMEAAVEK	1	Unmodified	962.4379	0.43789681	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	17.99	17.695	2	0.00083105	15276	160511_QHF_FH_JSI12i_1	84.615	57.485			0.50033	0.49989	17.657	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57818	0.56636	NaN	1	1	Median	0.43295	0.44121	NaN	1	1	Median	321350000	207300000	114050000	0	0	0	0	0	0	188480000	125540000	62938000	132870000	81755000	51115000	11561	4628	10953	71003;71004	95999;96000	96000			2	
EGMFNNANVLFK	1	Unmodified	1382.6653	0.66527099	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5									2	1	3	73.715	72.908	2	1.3565E-07	62828	160511_QHF_FH_JSI12i_2	135.55	116.31			1.3507	1.5228	27.04	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0401	1.2842	NaN	1	1	Median	1.0918	1.067	NaN	1	1	Median	1.7173	1.8342	2.2074	2	1	Median	372560000	154930000	217630000	0	0	0	100750000	48387000	52364000	147210000	60382000	86825000	124600000	46162000	78439000	11562	679	10954	71005;71006;71007;71008;71009;71010	96001;96002;96003;96004;96005;96006;96007	96001			7	
EGMLQHWELGQALR	0	Unmodified	1666.825	0.82495953	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		71.012	70.242	3	0.00030917	59035	160511_QHF_FH_JSI10i_3	64.244	59.696			1.281	1.2254	30.979	3	1	Median	1.9847	1.7256	NaN	1	1	Median	0.83191	0.92974	NaN	1	0	Median	1.281	1.2254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109360000	54041000	55321000	13673000	5345100	8327800	40088000	23650000	16438000	55602000	25047000	30555000	0	0	0	11563	984	10955	71011;71012;71013	96008;96009;96010	96009			2	
EGMNIVEAMER	0	Oxidation (M)	1293.5693	0.56932169	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.09	12	11	11			10	7	12		11	20	14	18	43.706	38.615	2	2.1114E-23	30212	160511_QHF_FH_JSI11i_2	180.19	164.31			0.89407	1.0047	23.117	62	4	Median	1.632	1.3238	8.6044	11	0	Median	0.85686	1.0207	10.632	20	1	Median	0.89992	1.0047	10.51	14	0	Linear	0.67449	0.76126	20.434	17	3	Median	9729800000	4941300000	4788500000	1600300000	609270000	991020000	3553800000	1902100000	1651700000	2725500000	1356400000	1369100000	1850100000	1073500000	776660000	11564	2040	10956	71014;71015;71016;71017;71018;71019;71020;71021;71022;71023;71024;71025;71026;71027;71028;71029;71030;71031;71032;71033;71034;71035;71036;71037;71038;71039;71040;71041;71042;71043;71044;71045;71046;71047;71048;71049;71050;71051;71052;71053;71054;71055;71056;71057;71058;71059;71060;71061;71062;71063;71064;71065;71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076	96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021;96022;96023;96024;96025;96026;96027;96028;96029;96030;96031;96032;96033;96034;96035;96036;96037;96038;96039;96040;96041;96042;96043;96044;96045;96046;96047;96048;96049;96050;96051;96052;96053;96054;96055;96056;96057;96058;96059;96060;96061;96062;96063;96064;96065;96066;96067;96068;96069;96070;96071;96072;96073;96074;96075;96076;96077;96078;96079;96080;96081;96082;96083;96084;96085;96086;96087;96088;96089;96090;96091;96092;96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103;96104;96105;96106;96107	96064		1702;1703	95	
EGMNIVEAMER	0	Unmodified	1277.5744	0.57440707	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.39	5	9	4			2	3	4	4	8	9	7	7	65.45	60.985	1;2	5.3451E-58	32996	160513_QHF_FH_JSI12Kac_4	218.07	199.4			0.95528	1.0058	29.409	30	9	Median	1.6086	1.336	26.488	8	2	Median	0.86786	1.0058	23.24	8	2	Median	1.0169	0.9964	22.196	7	3	Median	0.71432	0.75155	16.775	7	2	Median	84288000000	37339000000	46949000000	25148000000	8535800000	16612000000	18951000000	9644400000	9306800000	23252000000	9684600000	13568000000	16937000000	9474200000	7462400000	11565	2040	10956	71077;71078;71079;71080;71081;71082;71083;71084;71085;71086;71087;71088;71089;71090;71091;71092;71093;71094;71095;71096;71097;71098;71099;71100;71101;71102;71103;71104;71105;71106;71107	96108;96109;96110;96111;96112;96113;96114;96115;96116;96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127;96128;96129;96130;96131;96132;96133;96134;96135;96136;96137;96138;96139;96140;96141;96142;96143;96144;96145;96146;96147;96148;96149;96150;96151;96152;96153;96154;96155;96156	96142			49	
EGMNIVEAMER	0	2 Oxidation (M)	1309.5642	0.56423631	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.68	2	7			2	6	4	8		5	10	5	9	25.228	18.761	2	1.7582E-07	5644	160513_QHF_FH_JSI9Kac_3	107.06	95.008			0.88189	1.0276	24.481	29	3	Median	1.5767	1.2907	4.3397	5	0	Median	0.88836	1.0404	16.098	10	2	Median	1.0557	1.0317	16.938	5	1	Median	0.64757	0.71858	8.7125	9	0	Median	748760000	376020000	372730000	241530000	87711000	153820000	190750000	109530000	81220000	97560000	50478000	47082000	218910000	128300000	90607000	11566	2040	10956	71108;71109;71110;71111;71112;71113;71114;71115;71116;71117;71118;71119;71120;71121;71122;71123;71124;71125;71126;71127;71128;71129;71130;71131;71132;71133;71134;71135;71136	96157;96158;96159;96160;96161;96162;96163;96164;96165;96166;96167;96168;96169;96170;96171;96172;96173;96174;96175;96176;96177;96178;96179;96180;96181;96182;96183;96184;96185;96186;96187;96188;96189;96190;96191;96192	96169		1702;1703	36	
EGMTAFVEK	1	Unmodified	1010.4743	0.47428232	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	39.631	38.79	2	1.7758E-08	34641	160511_QHF_FH_JSI11i_1	151.44	124.19			1.0093	1.1048	36.12	7	0	Median	1.1536	0.95856	43.126	2	0	Median	1.0239	1.2498	4.5912	2	0	Median	1.1327	1.1048	NaN	1	0	Median	0.55189	0.60468	13.462	2	0	Median	3248900000	1518700000	1730200000	784470000	296510000	487970000	873460000	452870000	420590000	779740000	343690000	436050000	811240000	425610000	385630000	11567	1341	10957	71137;71138;71139;71140;71141;71142;71143	96193;96194;96195;96196;96197;96198;96199;96200;96201;96202;96203;96204;96205;96206;96207;96208	96193			16	
EGNAIFTFPNTPVK	1	Unmodified	1533.7827	0.78274359	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3									1	4	2	75.062	74.639	2	5.0363E-08	64518	160511_QHF_FH_JSI12i_2	100.38	79.599			0.75054	0.80764	37.008	4	1	Median	NaN	NaN	NaN	0	0	Median	0.62701	0.7436	NaN	1	0	Median	1.0679	1.0638	27.278	2	1	Median	0.50833	0.52942	NaN	1	0	Median	184320000	109050000	75273000	0	0	0	59073000	34311000	24762000	74240000	44991000	29249000	51006000	29743000	21262000	11568	5743	10958	71144;71145;71146;71147;71148;71149;71150	96209;96210;96211;96212;96213;96214;96215	96210			6	
EGNAVAVR	0	Unmodified	814.42972	0.42971539	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	8.4198	8.1908	2	0.030482	6073	160511_QHF_FH_JSI10i_1	41.575	24.611			0.59671	0.64249	30.236	4	0	Median	NaN	NaN	NaN	0	0	Median	0.6218	0.72818	NaN	1	0	Median	0.69214	0.68047	25.825	2	0	Median	0.39677	0.41289	NaN	1	0	Median	530780000	328240000	202540000	0	0	0	157110000	94484000	62627000	224240000	131800000	92440000	149430000	101950000	47473000	11569	2403	10959	71151;71152;71153;71154	96216;96217;96218	96218			3	
EGNDLYHEMIESGVINLK	1	Unmodified	2059.9885	0.98845562	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	1	2	89.419	89.041	2;3	5.8343E-11	76740	160511_QHF_FH_JSI12i_2	110.29	96.614			1.4517	1.7636	35.085	4	3	Linear	0.79581	0.68578	NaN	1	1	Median	1.3063	1.5341	NaN	1	0	Median	0.97465	0.95862	NaN	1	1	Median	1.205	1.271	NaN	1	1	Median	83591000	37275000	46316000	11200000	5879700	5320700	37869000	16903000	20967000	12704000	4589800	8113800	21818000	9902600	11915000	11570	851	10960	71155;71156;71157;71158;71159	96219;96220;96221;96222;96223	96219			5	
EGNEQLTEEER	0	Unmodified	1332.5794	0.57935233	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.72	13.306	2	0.0033019	11063	160511_QHF_FH_JSI12i_1	58.829	47.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11571	3586	10961	71160	96224	96224			1	
EGNFDIVSGTR	0	Unmodified	1193.5677	0.56766543	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.326	41.112	2	0.0018798	36494	160511_QHF_FH_JSI9i_1	74.53	51.749			0.96133	0.77814	NaN	1	1	Median	0.96133	0.77814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	230280000	112750000	117530000	230280000	112750000	117530000	0	0	0	0	0	0	0	0	0	11572	445	10962	71161	96225	96225			1	
EGNGTVMGAELR	0	Unmodified	1232.5819	0.58193529	909	P08590;P05976	MYL3;MYL1	Myosin light chain 3;Myosin light chain 1/3, skeletal muscle isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.97	5	3				2	3			2	4	3	4	33.937	29.821	2	9.8491E-54	26669	160511_QHF_FH_JSI11i_1	223.31	0			0.86921	1.0173	23.681	13	4	Median	1.3359	1.1335	14.762	2	0	Median	0.86413	1.0272	8.663	4	1	Median	1.0457	1.0164	15.668	3	0	Plateau	0.65669	0.69852	16.56	4	3	Median	3909000000	2109500000	1799400000	511440000	241070000	270370000	984750000	521370000	463380000	877730000	400210000	477520000	1535000000	946870000	588170000	11573	909	10963	71162;71163;71164;71165;71166;71167;71168;71169;71170;71171;71172;71173;71174	96226;96227;96228;96229;96230;96231;96232;96233;96234;96235;96236;96237;96238;96239;96240;96241;96242;96243;96244	96226			18	
EGNLELLK	1	Unmodified	914.5073	0.50729701	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	42.795	42.325	2	0.0046684	38499	160511_QHF_FH_JSI12i_1	67.993	25.884			0.89178	1.0258	16.886	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89178	1.0258	NaN	1	0	Median	1.0353	1.0174	NaN	1	0	Median	0.7505	0.76259	NaN	1	0	Median	309590000	158080000	151510000	0	0	0	116650000	60001000	56654000	110520000	51649000	58875000	82410000	46431000	35979000	11574	2107	10964	71175;71176;71177	96245;96246	96245			1	
EGNNPAENGDAK	1	Unmodified	1214.5164	0.51635814	833	P05204	HMGN2	Non-histone chromosomal protein HMG-17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	5.28	4			2	3					1	2	3	3	6.098	1.8758	2	3.6663E-53	3299	160511_QHF_FH_JSI11i_1	217.22	188.14			0.95261	1.1225	37.368	9	1	Median	1.6781	1.3695	NaN	1	0	Median	0.91671	1.0886	4.3333	2	1	Median	1.6348	1.5659	10.05	3	0	Median	0.69186	0.70015	4.3137	3	0	Median	2296200000	967860000	1328300000	440930000	170790000	270140000	541590000	233670000	307910000	773340000	265720000	507620000	540300000	297670000	242620000	11575	833	10965	71178;71179;71180;71181;71182;71183;71184;71185;71186	96247;96248;96249;96250;96251;96252;96253;96254;96255;96256;96257;96258;96259;96260;96261	96247			15	
EGNPAEINVERDEK	1	Unmodified	1598.7536	0.7536283	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	24.394	23.731	2;3	1.196E-06	20648	160511_QHF_FH_JSI11i_1	97.214	55.213			1.1382	1.2145	34.418	6	1	Median	1.6077	1.3513	12.994	2	1	Median	1.0508	1.2152	NaN	1	0	Median	1.233	1.2139	NaN	1	0	Median	0.63407	0.66972	5.5683	2	0	Median	737950000	384610000	353330000	147700000	58903000	88799000	202800000	105440000	97352000	175300000	87570000	87727000	212150000	132700000	79454000	11576	4521	10966	71187;71188;71189;71190;71191;71192;71193	96262;96263;96264;96265;96266;96267;96268;96269;96270	96264			9	
EGNPEEDLTADK	1	Unmodified	1316.5732	0.57320432	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.38	4			1	3					1	3	2	2	31.12	26.5	2	5.4585E-33	23365	160511_QHF_FH_JSI11i_1	197.3	162.91			0.95303	1.0325	18.511	8	0	Median	1.4185	1.1686	NaN	1	0	Median	0.83077	0.96465	8.9066	3	0	Plateau	1.1444	1.1078	13.683	2	0	Median	0.71708	0.75968	0.59991	2	0	Median	3492600000	1729000000	1763500000	778530000	321370000	457160000	1075100000	520740000	554400000	744880000	381430000	363440000	894010000	505470000	388540000	11577	1490	10967	71194;71195;71196;71197;71198;71199;71200;71201	96271;96272;96273;96274;96275;96276;96277;96278;96279;96280;96281;96282;96283;96284;96285;96286	96271			16	
EGNPPWEVTEAVLFIMAAIAK	1	Unmodified	2285.1766	0.17659074	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			105.3	97.825	3	2.893E-37	58961	160513_QHF_FH_JSI10Kac_6	166.06	150.36			1.3089	1.3209	27.111	2	0	Median	1.8444	1.6	NaN	1	0	Median	0.9289	1.0905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117410000	50453000	66954000	37768000	13620000	24148000	79640000	36833000	42807000	0	0	0	0	0	0	11578	5666	10968	71202;71203	96287;96288;96289	96289			3	
EGNQEVPFDVPELWYEDEK	1	Unmodified	2322.0328	0.032822856	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	1	2	100.07	99.998	2;3	4.1028E-13	90696	160511_QHF_FH_JSI10i_1	141.46	128.7			0.74664	0.86029	29.602	6	3	Median	NaN	NaN	NaN	0	0	Median	0.82208	0.93766	22.481	3	2	Median	1.0121	0.98227	NaN	1	1	Median	0.58167	0.59103	7.5124	2	0	Median	147460000	71544000	75914000	0	0	0	87538000	37025000	50513000	16309000	8176200	8132500	43612000	26344000	17268000	11579	1544	10969	71204;71205;71206;71207;71208;71209	96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302	96300			13	
EGNSPSFFNPEEAATVTSYLK	1	Unmodified	2287.0645	0.064457335	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		100.44	100.24	2;3	5.5207E-14	88473	160511_QHF_FH_JSI9i_1	127.57	115.59			0.99823	0.81334	41.172	2	2	Median	0.99823	0.81334	41.172	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34880000	12733000	22147000	34880000	12733000	22147000	0	0	0	0	0	0	0	0	0	11580	4856	10970	71210;71211;71212	96303;96304;96305	96305			3	
EGNTEQPVQTSK	1	Unmodified	1316.6208	0.62082322	5216	Q9P2K3	RCOR3	REST corepressor 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	9.8413	9.1082	2	8.0312E-06	7013	160511_QHF_FH_JSI12i_1	97.813	80.377			1.0613	0.88526	NaN	1	1	Median	1.0613	0.88526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23397000	6396600	17001000	23397000	6396600	17001000	0	0	0	0	0	0	0	0	0	11581	5216	10971	71213;71214	96306;96307	96306			2	
EGNVPNIIIAGPPGTGK	1	Unmodified	1632.8835	0.88352026	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	67.003	66.449	2;3	1.8334E-07	60554	160511_QHF_FH_JSI12i_1	123.38	107.01			0.96122	1.0445	24	6	5	Median	1.4223	1.1686	NaN	1	0	Median	0.96122	1.1522	11.394	2	2	Median	1.0558	1.0263	NaN	1	1	Median	0.69403	0.72144	5.1067	2	2	Median	686630000	355670000	330960000	109250000	51586000	57663000	256900000	126160000	130740000	145160000	71658000	73501000	175320000	106270000	69051000	11582	1429	10972	71215;71216;71217;71218;71219;71220	96308;96309;96310;96311;96312;96313	96309			6	
EGPAHEPK	1	Unmodified	863.41373	0.41373097	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	5.0011	4.4298	2	0.0018212	2397	160511_QHF_FH_JSI12i_2	84.743	67.503			0.78361	0.87756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78361	0.87756	NaN	1	0	Median	87087000	45003000	42084000	0	0	0	0	0	0	0	0	0	87087000	45003000	42084000	11583	1857	10973	71221;71222	96314;96315	96314			2	
EGPAVVGQFIQDVK	1	Unmodified	1485.7827	0.78274359	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	6	6	3				3			5	4	4	5	79.719	77.78	2;3	6.6791E-52	69984	160511_QHF_FH_JSI10i_2	216.68	194.69			0.76847	0.8639	23.916	15	3	Median	1.2913	1.0899	14.004	4	1	Median	0.74495	0.8639	16.318	3	1	Median	0.7816	0.77224	13.474	4	0	Median	0.73872	0.81043	25.251	4	1	Median	1840500000	961080000	879460000	341480000	146980000	194500000	470880000	263850000	207030000	608120000	315160000	292960000	420060000	235090000	184970000	11584	3343	10974	71223;71224;71225;71226;71227;71228;71229;71230;71231;71232;71233;71234;71235;71236;71237;71238;71239;71240	96316;96317;96318;96319;96320;96321;96322;96323;96324;96325;96326;96327;96328;96329;96330;96331;96332;96333;96334;96335;96336;96337;96338;96339;96340;96341;96342;96343;96344;96345	96345			30	
EGPEGNDIRR	0	Unmodified	1141.5476	0.54759869	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		2	0		3								1	1	1		8.4778	8.0952	2	0.0028656	5911	160511_QHF_FH_JSI9i_2	57.59	11.164			0.84294	0.9685	16.38	3	0	Plateau	0.86484	0.75089	NaN	1	0	Median	0.84294	1.0368	NaN	1	0	Median	0.84224	0.83993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89657000	47329000	42328000	24460000	12361000	12099000	33694000	19507000	14186000	31504000	15461000	16043000	0	0	0	11585	2168	10975	71241;71242;71243	96346	96346			1	
EGPGEAIVR	0	Unmodified	926.48214	0.48214489	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	21.293	20.683	2	0.01346	17573	160511_QHF_FH_JSI9i_2	56.378	28.204			0.90408	0.9047	20.625	4	2	Median	1.2357	1.0484	NaN	1	1	Median	0.60528	0.72711	NaN	1	0	Median	1.1183	1.0954	NaN	1	0	Median	0.73093	0.78072	NaN	1	1	Median	551320000	276040000	275270000	60867000	30757000	30110000	42831000	25975000	16856000	188530000	85571000	102960000	259090000	133740000	125350000	11586	1388	10976	71244;71245;71246;71247	96347;96348;96349;96350	96349			4	
EGPGLAELLANVASSILSHIK	1	Unmodified	2118.1685	0.1684689	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.09	97.368	3	4.2448E-10	57619	160513_QHF_FH_JSI10Kac_6	154.07	120.77			0.75106	0.87278	2.8768	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75106	0.87278	2.8768	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126630000	72847000	53780000	0	0	0	126630000	72847000	53780000	0	0	0	0	0	0	11587	5329	10977	71248;71249	96351;96352	96351			2	
EGPHYTPPIPNYQPPEGR	0	Unmodified	2047.9752	0.97518882	4913	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	54.449	53.745	3	0.00023298	46465	160511_QHF_FH_JSI11i_2	64.327	62.815			0.89094	0.95073	6.9961	4	3	Median	NaN	NaN	NaN	0	0	Median	0.8381	1.0393	NaN	1	0	Median	0.96543	0.95073	3.0616	2	2	Median	0.77676	0.88068	NaN	1	1	Median	231940000	117560000	114390000	0	0	0	67024000	30992000	36032000	113990000	59992000	53996000	50930000	26573000	24357000	11588	4913	10978	71250;71251;71252;71253;71254	96353;96354;96355;96356;96357	96355			4	
EGPMFEAMIMNR	0	Unmodified	1424.6251	0.62506243	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	78.279	77.424	2	9.9997E-05	66884	160511_QHF_FH_JSI12i_2	89.827	71.515			0.84656	1.0061	5.6602	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80795	1.009	NaN	1	0	Median	1.0068	1.0061	NaN	1	0	Median	0.84656	0.91349	NaN	1	0	Median	133030000	67107000	65923000	0	0	0	40471000	20122000	20348000	60212000	28517000	31695000	32348000	18468000	13880000	11589	238	10979	71255;71256;71257	96358;96359;96360;96361	96359			4	
EGPPPASPAQLLSK	1	Unmodified	1390.7456	0.7456298	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	56.714	56.107	2	0.0011513	49846	160511_QHF_FH_JSI9i_1	65.563	52.607			0.98148	0.97902	100.4	5	3	Median	1.2849	1.0471	NaN	1	0	Median	0.80792	0.93361	NaN	1	0	Median	1.0107	1.0035	3.494	2	2	Median	0.10118	0.10575	NaN	1	1	Median	685900000	398610000	287300000	132910000	63047000	69862000	120860000	64912000	55952000	267940000	124480000	143460000	164190000	146170000	18022000	11590	2817	10980	71258;71259;71260;71261;71262	96362;96363;96364;96365;96366;96367;96368;96369;96370	96369			9	
EGPSLGPPPVASALSR	0	Unmodified	1533.8151	0.81510635	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			66.999	66.336	2	0.0012594	60065	160511_QHF_FH_JSI10i_1	72.089	61.26			0.58298	0.56765	27.922	2	1	Median	0.57533	0.46595	NaN	1	0	Median	0.59073	0.69155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89814000	58364000	31450000	42341000	24074000	18267000	47473000	34290000	13183000	0	0	0	0	0	0	11591	482	10981	71263;71264	96371;96372	96371			2	
EGPTLSVPMVQGECLLK	1	Unmodified	1856.9376	0.93760602	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	88.476	88.151	2	6.3905E-08	80291	160511_QHF_FH_JSI11i_1	130.56	108.03			0.78341	0.82598	11.696	4	2	Median	NaN	NaN	NaN	0	0	Median	0.7305	0.82365	NaN	1	0	Median	0.77281	0.7499	14.065	2	2	Median	0.87493	0.8929	NaN	1	0	Median	97386000	60826000	36559000	0	0	0	18028000	10261000	7766600	60630000	37711000	22919000	18727000	12854000	5873500	11592	4348	10982	71265;71266;71267;71268	96373;96374;96375;96376;96377;96378;96379	96373			7	
EGPVLATSSGAGVFK	1	Unmodified	1418.7405	0.74054442	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		66.297	55.241	2	0.026486	30842	160513_QHF_FH_JSI11Kac_4	45.879	17.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11593	4714	10983	71269	96380	96380			1	
EGPVQFEEDPFGLDK	1	Unmodified	1705.7835	0.78353145	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.017	80.547	2	0.00010473	73330	160511_QHF_FH_JSI11i_1	102.87	91.007			0.93288	0.98859	10.408	4	0	Median	1.4147	1.1355	NaN	1	0	Median	0.92667	1.0392	NaN	1	0	Median	0.93913	0.89998	NaN	1	0	Median	0.90092	0.94048	NaN	1	0	Median	140650000	64889000	75756000	39071000	14688000	24383000	32847000	14909000	17938000	48601000	25578000	23023000	20126000	9714400	10411000	11594	2443	10984	71270;71271;71272;71273	96381;96382;96383;96384;96385;96386;96387;96388;96389	96382			9	
EGPYDVVVLPGGNLGAQNLSESAAVK	1	Unmodified	2583.318	0.31804626	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.606	10	2	1							3	3	3	4	89.746	89.273	2;3;4	1.9307E-58	79342	160511_QHF_FH_JSI9i_1	201.29	193.93			0.93646	0.94859	19.689	13	0	Median	1.3771	1.1312	17.072	3	0	Median	0.81614	0.94245	29.042	3	0	Median	0.98704	0.94859	3.5062	3	0	Plateau	0.90439	0.9428	7.0044	4	0	Median	4630700000	2263600000	2367200000	687470000	253740000	433720000	1446400000	722940000	723440000	1131300000	587560000	543730000	1365600000	699300000	666260000	11595	4276	10985	71274;71275;71276;71277;71278;71279;71280;71281;71282;71283;71284;71285;71286	96390;96391;96392;96393;96394;96395;96396;96397;96398;96399;96400;96401;96402;96403;96404;96405;96406;96407;96408;96409;96410;96411;96412;96413;96414;96415;96416;96417;96418;96419;96420;96421;96422;96423;96424;96425;96426;96427	96421			37	
EGPYSISVLYGDEEVPR	0	Unmodified	1908.9105	0.91052288	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	3	2	3	77.629	77.007	2;3	3.7413E-52	68635	160511_QHF_FH_JSI9i_1	218.5	203.93			1.3103	1.5404	21.104	11	1	Median	2.199	1.8394	24.856	3	0	Median	1.2644	1.5404	16.411	3	0	Median	1.6535	1.6236	3.8642	2	0	Median	1.2016	1.3175	19.571	3	1	Median	1300300000	530410000	769860000	236570000	77752000	158820000	425250000	194130000	231110000	304980000	108450000	196530000	333480000	150080000	183400000	11596	1192	10986	71287;71288;71289;71290;71291;71292;71293;71294;71295;71296;71297	96428;96429;96430;96431;96432;96433;96434;96435;96436;96437;96438;96439;96440;96441;96442	96437			13	
EGPYSISVLYGDEEVPRSPFK	1	Unmodified	2368.1587	0.15869207	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	83.905	83.441	3	3.7414E-22	72407	160511_QHF_FH_JSI12i_3	155.87	140.62			1.6754	1.6777	20.099	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7347	1.6777	5.0426	2	1	Median	1.366	1.4344	30.674	2	1	Median	426290000	154420000	271870000	0	0	0	0	0	0	235150000	77895000	157260000	191140000	76523000	114610000	11597	1192	10987	71298;71299;71300;71301;71302	96443;96444;96445;96446;96447;96448;96449	96449			7	
EGQEDQGLTK	1	Unmodified	1103.5095	0.50948185	1281;724	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.14	4	4	2		2	3				3	5	4	3	10.398	7.6738	2	2.3364E-14	6782	160511_QHF_FH_JSI11i_1	164.64	140.67			0.88541	1.0263	22.768	15	0	Median	1.4414	1.2062	4.618	3	0	Plateau	0.83485	1.0066	5.3342	5	0	Median	0.94338	0.9236	11.657	4	0	Linear	0.64891	0.62158	7.7061	3	0	Plateau	10440000000	5437100000	5002600000	2297800000	816530000	1481200000	2696500000	1456500000	1240100000	3121100000	1731100000	1390000000	2324300000	1433000000	891260000	11598	1281;724	10988	71303;71304;71305;71306;71307;71308;71309;71310;71311;71312;71313;71314;71315;71316;71317	96450;96451;96452;96453;96454;96455;96456;96457;96458;96459;96460;96461;96462;96463;96464;96465;96466;96467;96468;96469;96470;96471;96472;96473	96450			23	
EGQEEVLK	1	Unmodified	930.46583	0.46582612	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	14.397	13.956	2	0.00095149	11526	160511_QHF_FH_JSI10i_1	96.027	51.91			0.8175	0.63188	14.19	4	3	Linear	0.90055	0.74643	NaN	1	1	Median	0.63904	0.73901	NaN	1	0	Median	1.0292	0.99871	NaN	1	1	Median	0.74212	0.77975	NaN	1	1	Median	631120000	323700000	307430000	160470000	71870000	88602000	164840000	96762000	68081000	146830000	72037000	74797000	158980000	83028000	75947000	11599	3685	10989	71318;71319;71320;71321;71322	96474;96475;96476;96477;96478	96477			5	
EGQENGHITTK	1	Unmodified	1212.5735	0.57347909	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	5.8943	5.3102	2	0.011847	3310	160511_QHF_FH_JSI12i_2	55.401	31.972			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6672400	6672400	0	0	0	0	0	0	0	0	0	0	6672400	6672400	0	11600	1005	10990	71323	96479	96479			1	
EGQGEGETQEAAAATAAAR	0	Unmodified	1816.8187	0.81874776	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		27.114	25.856	2	1.8292E-10	22351	160511_QHF_FH_JSI9i_1	129.38	112.17			1.6385	1.3047	NaN	1	1	Median	1.6385	1.3047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11521000	2822900	8698200	11521000	2822900	8698200	0	0	0	0	0	0	0	0	0	11601	1898	10991	71324;71325	96480;96481	96481			2	
EGQNYQQNCIK	1	Unmodified	1380.6092	0.60921267	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.382	13.122	2	1.9112E-23	10956	160511_QHF_FH_JSI12i_1	179	143.74			1.0605	0.99979	29.25	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2671	1.4852	NaN	1	0	Median	1.0605	0.99979	NaN	1	0	Median	0.82186	0.83907	NaN	1	0	Median	196150000	93572000	102580000	0	0	0	58145000	26586000	31558000	71752000	33759000	37993000	66255000	33227000	33028000	11602	750	10992	71326;71327;71328	96482;96483;96484;96485;96486;96487	96485			6	
EGQPIPESGDPK	1	Unmodified	1252.5935	0.59354583	4074	Q96FS4	SIPA1	Signal-induced proliferation-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.45	19.193	2	0.0091806	16508	160511_QHF_FH_JSI11i_1	48.004	33.867			0.96835	1.1017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96835	1.1017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24316000	11697000	12618000	0	0	0	24316000	11697000	12618000	0	0	0	0	0	0	11603	4074	10993	71329;71330	96488;96489;96490	96488			3	
EGQPSPADEK	1	Unmodified	1056.4724	0.47236807	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.6377	7.29	2	0.00017352	5018	160511_QHF_FH_JSI11i_1	94.409	58.791			1.41	1.6981	17.727	4	1	Linear	1.8939	1.5749	NaN	1	0	Median	1.5404	1.8305	NaN	1	0	Median	1.2906	1.2625	NaN	1	1	Median	1.2024	1.2842	NaN	1	0	Median	426630000	195250000	231390000	115780000	40862000	74920000	132920000	71131000	61786000	85137000	39645000	45492000	92799000	43606000	49192000	11604	507	10994	71331;71332;71333;71334	96491;96492;96493;96494	96491			4	
EGQRPTQPVYQIQNR	0	Unmodified	1812.9231	0.92309367	4645	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				27.151	25.796	3	0.0038636	20934	160511_QHF_FH_JSI9i_3	55.841	50.839			2.3639	1.9835	NaN	1	1	Median	2.3639	1.9835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15443000	3596800	11846000	15443000	3596800	11846000	0	0	0	0	0	0	0	0	0	11605	4645	10995	71335	96495	96495			1	
EGQVEVLK	1	Unmodified	900.49165	0.49164694	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	22.652	22.343	2	0.016435	19583	160511_QHF_FH_JSI11i_1	49.536	22.74			0.84538	0.90668	38.327	3	0	Median	NaN	NaN	NaN	0	0	Median	0.42123	0.49115	NaN	1	0	Median	1.0242	0.99404	NaN	1	0	Median	0.84538	0.90668	NaN	1	0	Median	558150000	295700000	262460000	0	0	0	72228000	48735000	23493000	80950000	43120000	37830000	404980000	203840000	201130000	11606	3085	10996	71336;71337;71338	96496	96496			1	
EGRGESENAGTNQETR	0	Unmodified	1733.7565	0.75648185	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			5.1763	4.7759	3	9.7878E-08	2884	160511_QHF_FH_JSI10i_2	130.21	108.23			0.93554	0.96155	32.554	2	1	Median	1.4248	1.2104	NaN	1	0	Median	0.61428	0.76384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97980000	60697000	37284000	49458000	26420000	23039000	48522000	34277000	14245000	0	0	0	0	0	0	11607	2263	10997	71339;71340	96497;96498	96498			2	
EGRPPEPTPAK	1	Unmodified	1177.6091	0.60913632	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.38	2	8	1				1			2	3	4	3	10.525	9.5506	2;3	0.0022222	7327	160511_QHF_FH_JSI12i_2	75.294	54.392			0.88437	0.97028	25.291	12	0	Median	1.5055	1.3046	11.371	2	0	Median	0.78688	0.84241	9.0097	3	0	Plateau	1.0076	0.99587	7.7194	4	0	Median	0.57241	0.63921	11.301	3	0	Median	1134300000	603380000	530870000	180820000	80302000	100520000	234420000	136080000	98344000	407720000	182390000	225330000	311300000	204620000	106680000	11608	5474	10998	71341;71342;71343;71344;71345;71346;71347;71348;71349;71350;71351;71352	96499;96500;96501;96502;96503;96504;96505;96506;96507;96508;96509;96510;96511;96512;96513;96514;96515	96500			17	
EGRPSGEAFVELESEDEVK	1	Unmodified	2105.9753	0.97530798	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.26	0.636	2	10	7							4	5	8	2	56.256	55.578	2;3	1.1469E-18	49185	160511_QHF_FH_JSI10i_2	140.95	131.37			1.1839	1.1041	26.44	15	6	Median	1.2366	1.0142	13.863	3	0	Median	0.71143	0.87302	29.015	4	2	Median	1.3143	1.2395	13.317	7	4	Median	0.67001	0.73986	NaN	1	0	Median	2514500000	1204700000	1309800000	471130000	207680000	263450000	637310000	374020000	263280000	1318000000	572150000	745880000	88022000	50820000	37202000	11609	1383	10999	71353;71354;71355;71356;71357;71358;71359;71360;71361;71362;71363;71364;71365;71366;71367;71368;71369;71370;71371	96516;96517;96518;96519;96520;96521;96522;96523;96524;96525;96526;96527;96528;96529;96530;96531;96532;96533;96534;96535;96536;96537;96538;96539;96540;96541;96542;96543;96544;96545;96546;96547	96544			32	
EGRPSGEAFVELESEEEVK	1	Unmodified	2119.991	0.99095804	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	3	3	2	57.446	56.674	3	1.6391E-08	49870	160511_QHF_FH_JSI10i_2	95.666	86.957			0.74917	0.9097	23.902	6	2	Median	1.3966	1.1767	NaN	1	0	Median	0.74081	0.9097	11.156	2	1	Median	0.84839	0.82535	39.918	2	0	Median	0.6931	0.76325	NaN	1	1	Median	434530000	235290000	199240000	72573000	31752000	40821000	136070000	75357000	60718000	211030000	118600000	92433000	14854000	9582500	5271100	11610	1864	11000	71372;71373;71374;71375;71376;71377;71378;71379;71380	96548;96549;96550;96551;96552;96553;96554;96555;96556;96557;96558;96559;96560	96556			13	
EGSALSHVRK	1	Unmodified	1082.5833	0.58325592	2818	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				8.2245	7.6328	2	0.0087081	5451	160511_QHF_FH_JSI9i_3	64.841	38.239			1.4389	1.1893	NaN	1	1	Median	1.4389	1.1893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28385000	8290100	20095000	28385000	8290100	20095000	0	0	0	0	0	0	0	0	0	11611	2818	11001	71381	96561	96561			1	
EGSASTEVLR	0	Unmodified	1047.5197	0.51965261	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.482	17.024	2	0.010877	14647	160511_QHF_FH_JSI12i_1	58.955	42.752			0.68007	0.71433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68007	0.71433	NaN	1	0	Median	123010000	81028000	41982000	0	0	0	0	0	0	0	0	0	123010000	81028000	41982000	11612	552	11002	71382	96562	96562			1	
EGSDGPLATSKPVPAEK	2	Unmodified	1681.8523	0.85227972	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.13	27.543	3	2.8258E-05	24303	160511_QHF_FH_JSI10i_1	83.253	62.826			0.93588	0.96375	23.682	4	0	Median	1.7811	1.4525	NaN	1	0	Median	0.77315	0.91171	NaN	1	0	Median	1.0397	1.0188	NaN	1	0	Median	0.84245	0.8537	NaN	1	0	Median	644610000	331690000	312920000	132170000	46583000	85586000	192810000	122140000	70663000	187670000	87218000	100450000	131970000	75744000	56221000	11613	899	11003	71383;71384;71385;71386	96563;96564;96565;96566;96567;96568	96566			6	
EGSGDGGRAELNPWPEYIYTR	0	Unmodified	2366.0927	0.092737771	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	71.954	71.317	3	2.8274E-18	61566	160511_QHF_FH_JSI12i_3	151.82	144.6			1.0106	1.0981	20.197	6	1	Median	1.3032	1.1079	NaN	1	1	Median	0.89837	1.0884	NaN	1	0	Median	1.2194	1.181	2.4288	2	0	Median	0.73028	0.77892	7.4467	2	0	Median	803380000	416050000	387330000	51949000	18708000	33241000	198010000	109810000	88202000	292500000	137140000	155370000	260920000	150400000	110520000	11614	1282	11004	71387;71388;71389;71390;71391;71392;71393;71394	96569;96570;96571;96572;96573;96574;96575;96576;96577;96578;96579;96580;96581;96582;96583;96584;96585;96586	96585			18	
EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR	0	Unmodified	2990.3076	0.3075747	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.442	92.721	3	8.7174E-29	54220	160513_QHF_FH_JSI10Kac_6	122.08	112.74			1.0619	1.2624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0619	1.2624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	330280000	163230000	167050000	0	0	0	330280000	163230000	167050000	0	0	0	0	0	0	11615	456	11005	71395	96587	96587			1	
EGSGNPTPLINPLAGR	0	Unmodified	1591.8318	0.83181904	5165	Q9NZN8	CNOT2	CCR4-NOT transcription complex subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.173	64.542	2	2.7726E-07	58784	160511_QHF_FH_JSI12i_1	156	143.05			0.72582	0.74817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72582	0.74817	NaN	1	1	Median	99244000	49886000	49358000	0	0	0	0	0	0	0	0	0	99244000	49886000	49358000	11616	5165	11006	71396	96588	96588			1	
EGSIWNHQPCFLK	1	Unmodified	1614.7613	0.76129664	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	59.55	59.071	2;3	4.5481E-06	50731	160511_QHF_FH_JSI12i_3	124.67	102.64			0.89401	0.92609	18.207	8	6	Median	NaN	NaN	NaN	0	0	Median	0.93266	1.0881	8.3781	2	2	Median	0.87461	0.81148	16.043	3	2	Median	0.91384	0.94526	12.442	3	2	Median	1146100000	608010000	538080000	0	0	0	102610000	49070000	53544000	461040000	264560000	196470000	582440000	294370000	288060000	11617	2326	11007	71397;71398;71399;71400;71401;71402;71403;71404	96589;96590;96591;96592;96593;96594;96595;96596;96597;96598;96599;96600;96601	96601			13	
EGSLPLQYEWQK	1	Unmodified	1476.7249	0.72489436	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	66.019	65.472	2	5.5085E-05	59499	160511_QHF_FH_JSI11i_1	98.04	59.258			0.56674	0.66416	44.985	5	2	Median	1.3651	1.1024	NaN	1	1	Median	0.38772	0.45636	53.069	2	1	Median	0.68124	0.67252	NaN	1	0	Median	0.56448	0.5922	NaN	1	0	Median	586060000	391250000	194810000	51224000	23043000	28181000	280740000	200440000	80303000	93642000	57543000	36099000	160460000	110230000	50230000	11618	2080	11008	71405;71406;71407;71408;71409	96602;96603;96604;96605;96606;96607	96603			6	
EGSLVINSK	1	Unmodified	945.51311	0.51311067	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.25	5.63	3						1			1	1	2		25.347	22.657	2	0.0014852	19869	160511_QHF_FH_JSI10i_1	68.846	50.522			1.1229	1.1007	26.628	4	0	Median	1.9694	1.5881	NaN	1	0	Median	0.69147	0.83452	NaN	1	0	Median	1.1229	1.1007	6.079	2	0	Median	NaN	NaN	NaN	0	0	Median	913290000	429240000	484060000	263690000	100980000	162700000	270160000	162210000	107950000	379450000	166040000	213410000	0	0	0	11619	5658	11009	71410;71411;71412;71413	96608;96609;96610	96609			3	
EGSPANWK	1	Unmodified	887.41373	0.41373097	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.17	0.373	5	1								1	1	3	1	16.02	15.62	2	0.0016392	13005	160511_QHF_FH_JSI11i_1	86.794	60.9			0.87887	0.71553	65.94	5	1	Median	0.87887	0.71553	NaN	1	0	Median	0.53315	0.63156	NaN	1	0	Median	1.5869	1.5398	73.897	2	1	Median	0.45014	0.46206	NaN	1	0	Median	449710000	259060000	190660000	61324000	31289000	30035000	111250000	74586000	36664000	180230000	86551000	93675000	96916000	66630000	30286000	11620	758	11010	71414;71415;71416;71417;71418;71419	96611;96612;96613;96614	96611			4	
EGSPLEDLALLEALSEVVQNTENLK	1	Unmodified	2710.3913	0.39127078	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	103.9	103.83	3	2.2374E-22	91578	160511_QHF_FH_JSI11i_2	140.17	136.1			1.1886	1.1426	10.799	3	2	Median	1.5107	1.3172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.1035	4.9274	2	1	Median	NaN	NaN	NaN	0	0	Median	118990000	56919000	62071000	15167000	5187900	9979400	16171000	9554100	6617000	83173000	37698000	45475000	4479300	4479300	0	11621	648	11011	71420;71421;71422;71423;71424;71425	96615;96616;96617;96618;96619;96620;96621	96619			7	
EGSQGELTPANSQSR	0	Unmodified	1559.7176	0.71757715	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.043	13.202	2	1.9909E-10	11072	160511_QHF_FH_JSI10i_1	153.52	134.77			0.98472	0.97924	16.023	5	0	Median	1.5362	1.2782	NaN	1	0	Median	1.0258	1.2125	NaN	1	0	Median	0.9792	0.96043	2.7428	2	0	Median	0.86882	0.89183	NaN	1	0	Median	461700000	212790000	248910000	87309000	36478000	50831000	144160000	69869000	74288000	131990000	62634000	69361000	98239000	43809000	54430000	11622	2349	11012	71426;71427;71428;71429;71430	96622;96623;96624;96625;96626;96627	96627			6	
EGSRTDDEVVQREEEAIQLDGLNASQIR	0	Unmodified	3156.5283	0.5283264	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				74.487	73.695	4	5.9129E-05	64760	160511_QHF_FH_JSI9i_2	49.486	43.325			1.171	0.99397	NaN	1	1	Median	1.171	0.99397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76264000	21157000	55107000	76264000	21157000	55107000	0	0	0	0	0	0	0	0	0	11623	1057	11013	71431	96628	96628			1	
EGSTAQLIINTEK	1	Unmodified	1402.7304	0.73037367	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS			13	0						1					1			55.367	45.977	2	0.00061985	24056	160513_QHF_FH_JSI10Kac_3	89.548	69.761			0.94142	1.0437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94142	1.0437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1172500	512460	660090	0	0	0	1172500	512460	660090	0	0	0	0	0	0	11624	107	11014	71432	96629	96629			1	
EGSTQQLQTTSPK	1	Unmodified	1403.6892	0.68923713	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					2	1	2	1	16.942	14.202	2	1.1699E-16	11782	160511_QHF_FH_JSI9i_1	208.74	184.4			0.7956	0.84689	30.615	6	4	Median	1.496	1.2307	20.858	2	2	Median	0.67049	0.80629	NaN	1	1	Median	0.76296	0.73398	27.184	2	1	Median	0.63849	0.69936	NaN	1	0	Median	410460000	188100000	222360000	160820000	52999000	107820000	125700000	74361000	51341000	122100000	59604000	62496000	1837000	1138800	698230	11625	2956	11015	71433;71434;71435;71436;71437;71438	96630;96631;96632;96633;96634;96635	96632			6	
EGSVLDILK	1	Unmodified	972.54916	0.54916182	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	72.279	71.609	2	0.0002745	61776	160511_QHF_FH_JSI12i_2	83.783	48.488			0.83406	0.9839	32.903	5	0	Median	2.0542	1.7487	NaN	1	0	Median	0.83406	0.9839	NaN	1	0	Median	1.0478	0.99477	NaN	1	0	Median	0.71739	0.78509	6.2691	2	0	Median	200180000	99288000	100890000	27934000	9292900	18641000	46171000	21629000	24542000	49070000	22528000	26542000	77006000	45838000	31167000	11626	1684	11016	71439;71440;71441;71442;71443	96636;96637;96638	96637			3	
EGSVTSVNLTK	1	Unmodified	1133.5928	0.59281755	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	32.547	29.996	2	0.00040556	26595	160511_QHF_FH_JSI10i_1	71.524	47.494			0.75859	0.67033	24.682	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.57883	0.6882	NaN	1	0	Median	1.0127	0.97443	2.3369	2	1	Median	0.58711	0.60057	NaN	1	0	Median	169810000	106590000	63213000	0	0	0	53609000	35274000	18335000	58641000	32467000	26173000	57556000	38851000	18704000	11627	2203	11017	71444;71445;71446;71447	96639;96640;96641;96642	96642			4	
EGTAPSENGETK	1	Unmodified	1218.5364	0.53642488	2696	Q15651	HMGN3	High mobility group nucleosome-binding domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					1	2	2	3	6.7779	3.8557	2	9.6976E-16	3808	160511_QHF_FH_JSI11i_1	156.51	125.28			0.75181	0.84936	39.819	8	2	Median	1.5436	1.2773	NaN	1	0	Median	0.6992	0.81938	4.1072	2	0	Median	1.6429	1.5814	2.438	2	0	Median	0.56912	0.59903	21.213	3	2	Median	1166700000	648610000	518090000	190490000	87192000	103300000	187130000	99267000	87858000	228180000	95585000	132590000	560910000	366560000	194350000	11628	2696	11018	71448;71449;71450;71451;71452;71453;71454;71455	96643;96644;96645;96646;96647;96648;96649;96650;96651;96652;96653;96654;96655	96643			13	
EGTDMFIIK	1	Unmodified	1052.5212	0.52123251	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		60.645	60.213	2	0.0046083	54568	160511_QHF_FH_JSI11i_1	66.546	47.764			0.84628	0.82766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84628	0.82766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56847000	32584000	24263000	0	0	0	0	0	0	56847000	32584000	24263000	0	0	0	11629	3252	11019	71456	96656	96656			1	
EGTEASASK	1	Unmodified	878.39814	0.39814049	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	0.19092	-0.1457	2	0.030587	180	160511_QHF_FH_JSI12i_1	48.091	18.753			1.0396	1.0577	1.8418	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0396	1.0577	1.8418	2	2	Median	35706000	18124000	17582000	0	0	0	0	0	0	0	0	0	35706000	18124000	17582000	11630	3712	11020	71457;71458	96657;96658	96658			2	
EGTEAWEAAMK	1	Unmodified	1221.5336	0.53358811	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.409	43.743	2	7.887E-13	38867	160511_QHF_FH_JSI9i_1	142	127.84			0.55311	0.54082	23.319	4	0	Median	0.62785	0.51886	NaN	1	0	Median	0.48727	0.56372	NaN	1	0	Median	0.67938	0.66364	NaN	1	0	Median	0.37625	0.38075	NaN	1	0	Median	762150000	507430000	254720000	153360000	96913000	56442000	204850000	139910000	64945000	221200000	141650000	79545000	182750000	128960000	53789000	11631	2517	11021	71459;71460;71461;71462	96659;96660;96661;96662;96663;96664;96665	96665			7	
EGTETFADHREGILK	1	Unmodified	1701.8322	0.83221298	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.423	33.423	3	0.005268	29108	160511_QHF_FH_JSI11i_3	51.643	31.547			1.1961	1.0976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1961	1.0976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	152640000	59418000	93224000	0	0	0	0	0	0	152640000	59418000	93224000	0	0	0	11632	5616	11022	71463	96666	96666			1	
EGTGSTATSSSSTAGAAGK	1	Unmodified	1626.7333	0.73328679	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.47	4	5	4	3	3					3	5	6	5	8.6355	5.9351	2	0	5400	160511_QHF_FH_JSI11i_1	393.9	381.31			0.86445	0.95535	29.754	17	1	Median	1.5204	1.2265	19.528	2	0	Median	0.85	0.97773	8.0206	5	0	Median	1.0407	1.0114	7.512	5	1	Median	0.57855	0.61537	30.768	5	0	Median	4980600000	2716000000	2264500000	1264700000	543470000	721200000	1346700000	788350000	558300000	1346300000	735860000	610410000	1023000000	648350000	374610000	11633	283	11023	71464;71465;71466;71467;71468;71469;71470;71471;71472;71473;71474;71475;71476;71477;71478;71479;71480;71481;71482	96667;96668;96669;96670;96671;96672;96673;96674;96675;96676;96677;96678;96679;96680;96681;96682;96683;96684;96685;96686;96687;96688;96689;96690;96691;96692;96693;96694;96695;96696;96697	96670			31	
EGTGTEMPMIGDR	0	Unmodified	1392.6014	0.6013501	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	45.603	44.885	2	3.2401E-06	40635	160511_QHF_FH_JSI11i_1	122.51	101.64			1.2883	1.2509	41.582	6	6	Median	2.5695	2.0857	47.348	2	2	Median	0.75679	0.87972	NaN	1	1	Median	1.2883	1.2509	9.0327	2	2	Median	1.0102	1.0587	NaN	1	1	Median	1754900000	796550000	958360000	366460000	118870000	247590000	333490000	168920000	164570000	750090000	356710000	393370000	304880000	152050000	152830000	11634	2193	11024	71483;71484;71485;71486;71487;71488	96698;96699;96700;96701;96702;96703;96704;96705;96706	96700			9	
EGTIGDMAILGITESFQVK	1	Unmodified	2008.0187	0.018693117	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		101.86	101.74	2;3	6.679E-54	89514	160511_QHF_FH_JSI11i_2	218.68	196.8			0.99919	1.0177	3.7468	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99919	1.0177	3.7468	2	1	Median	NaN	NaN	NaN	0	0	Median	548320000	258380000	289940000	0	0	0	0	0	0	548320000	258380000	289940000	0	0	0	11635	2090	11025	71489;71490	96707;96708	96707			2	
EGTIQVQGQALFFR	0	Unmodified	1592.8311	0.83109076	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.446	74.591	2	5.8408E-10	64467	160511_QHF_FH_JSI12i_2	149.96	131.33			1.6413	1.6063	37.518	4	0	Median	1.8332	1.5735	NaN	1	0	Median	1.7007	2.1085	NaN	1	0	Median	1.584	1.6398	NaN	1	0	Median	0.77845	0.86959	NaN	1	0	Median	135220000	51150000	84075000	38793000	6347500	32446000	30630000	11880000	18751000	35413000	14212000	21201000	30388000	18711000	11677000	11636	4126	11026	71491;71492;71493;71494	96709;96710;96711;96712;96713;96714	96710			6	
EGTLIEDSPDFR	0	Unmodified	1377.6412	0.64122431	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				53.79	52.601	2	3.635E-14	46750	160511_QHF_FH_JSI9i_1	131.82	112.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11637	3306	11027	71495	96715	96715			1	
EGTLQHAFLR	0	Unmodified	1170.6146	0.61455605	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	36.914	35.716	3	0.0019149	30994	160511_QHF_FH_JSI9i_2	54.094	40.186			0.78155	0.73961	58.655	2	2	Median	1.3098	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46635	0.48852	NaN	1	1	Median	97589000	52728000	44861000	80584000	40206000	40379000	0	0	0	0	0	0	17005000	12522000	4482200	11638	3951	11028	71496;71497	96716;96717	96717			2	
EGTLSDSTGSEK	1	Unmodified	1209.5361	0.53609053	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.6668	9.4854	2	0.00016982	7222	160511_QHF_FH_JSI11i_1	82.417	64.08			0.73972	0.77803	78.285	2	1	Median	NaN	NaN	NaN	0	0	Median	0.39069	0.44729	NaN	1	1	Median	1.4006	1.3533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58668000	33528000	25140000	0	0	0	29590000	22010000	7580200	29078000	11518000	17560000	0	0	0	11639	340	11029	71498;71499	96718;96719	96718			2	
EGTTPKPK	2	Unmodified	856.46543	0.46543219	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								3	3	4	3	4.7689	4.4237	2;3	0.0032289	2191	160511_QHF_FH_JSI12i_2	52.482	28.327			1.0014	1.0544	32.763	13	0	Median	2.1418	1.7916	0.64647	3	0	Plateau	0.85871	1.0544	6.8192	3	0	Median	1.0719	1.0682	5.7298	4	0	Median	0.61422	0.69175	5.9337	3	0	Plateau	4405300000	2135900000	2269400000	782650000	242500000	540150000	955960000	493570000	462400000	1809500000	875570000	933920000	857220000	524300000	332920000	11640	1967	11030	71500;71501;71502;71503;71504;71505;71506;71507;71508;71509;71510;71511;71512	96720;96721;96722;96723;96724;96725;96726;96727;96728;96729;96730;96731;96732	96723			13	
EGTTPKPK	2	Acetyl (K)	898.476	0.47599688	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.5	0.5					2	2					2	2		11.665	4.3508	2	0.0026283	3844	160513_QHF_FH_JSI10Kac_2	96.253	61.445			0.53253	0.5704	86.822	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0184	1.2086	14.998	2	0	Median	0.27899	0.2723	13.381	2	0	Median	NaN	NaN	NaN	0	0	Median	72363000	52617000	19747000	0	0	0	15639000	6652300	8986900	56724000	45964000	10760000	0	0	0	11641	1967	11030	71513;71514;71515;71516	96733;96734;96735;96736	96736	1988		4	
EGVDWMNK	1	Unmodified	977.42767	0.42766648	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.267	37.847	2	0.0055698	33851	160511_QHF_FH_JSI10i_1	65.235	53.466			1.1388	1.1051	40.112	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9704	1.1492	NaN	1	0	Median	1.1388	1.1051	NaN	1	0	Median	0.52701	0.56302	NaN	1	1	Median	182900000	102040000	80866000	0	0	0	62106000	28263000	33843000	76338000	45038000	31300000	44459000	28736000	15723000	11642	1687	11031	71517;71518;71519	96737;96738;96739	96739			3	
EGVECEVINMR	0	Unmodified	1334.5959	0.59587079	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	48.096	47.617	2	3.608E-07	43275	160511_QHF_FH_JSI12i_1	120.09	106.32			1.1374	0.90341	11.913	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.78138	0.91677	NaN	1	1	Median	1.0315	0.98126	13.766	2	2	Median	0.78723	0.81294	NaN	1	1	Median	253890000	128330000	125560000	0	0	0	52233000	28787000	23446000	147670000	70018000	77652000	53988000	29529000	24459000	11643	990	11032	71520;71521;71522;71523	96740;96741;96742;96743	96742			4	
EGVFAKEVR	1	Acetyl (K)	1075.5662	0.56620887	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	1.24					1	4	3	5	4	3	5	4	5	47.404	37.026	2	1.3719E-07	20346	160513_QHF_FH_JSI12Kac_5	144.77	98.345			0.80105	0.88586	263.98	15	3	Median	1.6507	1.4961	9.0494	2	0	Median	0.72334	0.80116	221.11	4	1	Median	0.95633	403.51	359.18	4	1	Linear	0.52369	0.56032	203.97	5	1	Median	6067500000	2977900000	3089600000	1627700000	204800000	1422900000	856180000	525150000	331040000	1358500000	193360000	1165100000	2225100000	2054600000	170530000	11644	1650	11033	71524;71525;71526;71527;71528;71529;71530;71531;71532;71533;71534;71535;71536;71537;71538;71539;71540	96744;96745;96746;96747;96748;96749;96750;96751;96752;96753;96754;96755;96756;96757;96758;96759;96760;96761;96762;96763;96764;96765;96766;96767;96768;96769;96770;96771;96772;96773	96763	1663		30	
EGVFPDNFAVQINELDK	1	Unmodified	1933.9422	0.94215736	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	97.83	97.631	2	0.0016316	88552	160511_QHF_FH_JSI12i_1	58.674	44.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11645	5664	11034	71541	96774	96774			1	
EGVHGGLINK	1	Unmodified	1022.5509	0.55089316	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	6.31	2	13	10					3	9	7	11	10	9	18.686	15.618	2;3	3.7123E-11	12787	160511_QHF_FH_JSI11i_2	149.65	132.73			0.9195	0.98486	61.081	36	12	Median	1.2392	1.0367	3.1759	7	0	Median	0.91744	1.0951	50.589	10	5	Median	0.89535	0.87457	81.606	10	3	Median	0.60537	0.65177	66.92	9	4	Median	37204000000	18036000000	19168000000	2950700000	1104600000	1846100000	6828100000	3171800000	3656300000	11043000000	5491400000	5551800000	16382000000	8268200000	8114100000	11646	876	11035	71542;71543;71544;71545;71546;71547;71548;71549;71550;71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562;71563;71564;71565;71566;71567;71568;71569;71570;71571;71572;71573;71574;71575;71576;71577;71578	96775;96776;96777;96778;96779;96780;96781;96782;96783;96784;96785;96786;96787;96788;96789;96790;96791;96792;96793;96794;96795;96796;96797;96798;96799;96800;96801;96802;96803;96804;96805;96806;96807;96808;96809;96810;96811;96812;96813;96814;96815;96816;96817;96818;96819;96820;96821;96822;96823;96824;96825;96826;96827;96828;96829;96830;96831;96832;96833;96834;96835;96836;96837;96838;96839;96840;96841	96809			67	
EGVHGGLINKK	2	Unmodified	1150.6459	0.64585618	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.13		12	27						17	17	16	13	10	13.378	10.544	2;3;4	1.4739E-19	8344	160511_QHF_FH_JSI10i_3	145.17	103.06			0.76706	0.73566	96.996	52	30	Median	1.2052	1.0238	97.896	15	10	Median	0.57181	0.66773	103.29	14	8	Median	0.63169	0.60497	84.924	13	6	Median	0.41932	0.46022	81.696	10	6	Median	92790000000	43771000000	49019000000	19159000000	6621300000	12538000000	18637000000	9425500000	9211100000	25944000000	11499000000	14445000000	29050000000	16225000000	12825000000	11647	876	11036	71579;71580;71581;71582;71583;71584;71585;71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597;71598;71599;71600;71601;71602;71603;71604;71605;71606;71607;71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630;71631;71632;71633;71634	96842;96843;96844;96845;96846;96847;96848;96849;96850;96851;96852;96853;96854;96855;96856;96857;96858;96859;96860;96861;96862;96863;96864;96865;96866;96867;96868;96869;96870;96871;96872;96873;96874;96875;96876;96877;96878;96879;96880;96881;96882;96883;96884;96885;96886;96887;96888;96889;96890;96891;96892;96893;96894;96895;96896;96897;96898;96899;96900;96901;96902;96903;96904;96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915;96916;96917;96918;96919;96920;96921;96922;96923;96924;96925;96926;96927;96928;96929;96930;96931;96932;96933;96934;96935;96936;96937;96938	96870			95	
EGVHGGLINKK	2	Acetyl (K)	1192.6564	0.65642086	876	P07737	PFN1	Profilin-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.75							3	6	7	1	6	5	4	32.697	23.531	2;3	1.8635E-06	13965	160513_QHF_FH_JSI11Kac_5	109.16	63.998			0.29937	0.32589	92.175	16	0	Median	0.76389	0.64999	NaN	1	0	Median	1.4913	1.779	8.5113	6	0	Median	0.26279	0.25554	3.6669	5	0	Median	0.29433	0.32045	3.7247	4	0	Median	1459900000	1062900000	397040000	26355000	15303000	11052000	303110000	129260000	173850000	992260000	812590000	179670000	138170000	105700000	32467000	11648	876	11036	71635;71636;71637;71638;71639;71640;71641;71642;71643;71644;71645;71646;71647;71648;71649;71650	96939;96940;96941;96942;96943;96944;96945;96946;96947;96948;96949;96950;96951;96952;96953;96954;96955;96956;96957;96958	96945	583;584		19	
EGVIEPDTDAPQEMGDENAEITEEMMDQANDKK	2	Unmodified	3678.5495	0.54951663	1707	P50502	ST13	Hsc70-interacting protein	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			80.56	80.402	3	3.9957E-07	73028	160511_QHF_FH_JSI10i_1	51.758	50.136			0.82442	0.93888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82442	0.93888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21299000	14202000	7096800	0	0	0	21299000	14202000	7096800	0	0	0	0	0	0	11649	1707	11037	71651	96959	96959			1	
EGVILTNESAASTGQPDNDVTEGQR	0	Unmodified	2587.1998	0.19978162	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	48.99	48.311	2;3	1.7622E-271	43492	160511_QHF_FH_JSI10i_1	457.48	449.09			1.0779	1.1126	26.298	8	0	Median	1.7754	1.4662	2.5838	2	0	Median	1.0383	1.2215	4.6767	2	0	Median	1.0969	1.0466	0.1357	2	0	Median	0.72787	0.75214	2.9978	2	0	Median	1749000000	846210000	902830000	314030000	115070000	198960000	467100000	221840000	245260000	471910000	227110000	244800000	496000000	282190000	213810000	11650	2282	11038	71652;71653;71654;71655;71656;71657;71658;71659	96960;96961;96962;96963;96964;96965;96966;96967;96968;96969;96970;96971;96972;96973;96974	96969			15	
EGVKFDESEK	2	Unmodified	1166.5455	0.54553301	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.09	3.45		10					1			2	2	3	4	18.216	16.881	2;3	0.0019632	14205	160511_QHF_FH_JSI10i_2	99.568	68.881			0.64014	0.71	40.33	11	6	Median	1.1861	1.0182	11.487	2	0	Median	0.40099	0.48932	30.807	2	2	Median	0.97439	0.96612	42.703	3	2	Median	0.60176	0.65846	33.93	4	2	Median	1217100000	635030000	582120000	310950000	80977000	229970000	187480000	126880000	60601000	397090000	229400000	167690000	321630000	197770000	123860000	11651	1057	11039	71660;71661;71662;71663;71664;71665;71666;71667;71668;71669;71670	96975;96976;96977;96978;96979;96980;96981;96982;96983;96984;96985;96986;96987	96986			13	
EGVKFDESEK	2	Acetyl (K)	1208.5561	0.55609769	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	37.659	28.898	2	0.00018634	16440	160513_QHF_FH_JSI12Kac_3	98.943	71.813			0.59939	0.6503	83.863	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1112	1.3027	6.4964	2	0	Median	0.34334	0.33989	NaN	1	0	Median	0.25364	0.27797	NaN	1	0	Median	101220000	72592000	28624000	0	0	0	17540000	8484600	9055600	70383000	53432000	16951000	13293000	10675000	2617200	11652	1057	11039	71671;71672;71673;71674	96988;96989;96990;96991	96990	889		4	
EGVKTENNDHINLK	2	Acetyl (K)	1651.8166	0.81656291	1968	P61956	SUMO2	Small ubiquitin-related modifier 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	14.4	0.495							4	3		1	3		3	38.704	28.99	2;3	9.4548E-18	17300	160513_QHF_FH_JSI12Kac_4	145.43	133.84			0.86838	0.96243	56.894	7	1	Median	4.1939	3.3662	NaN	1	1	Median	1.0023	1.202	13.575	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56503	0.62078	24.395	3	0	Plateau	99465000	53682000	45783000	2528200	122020	2406200	49766000	25779000	23987000	0	0	0	47172000	27781000	19390000	11653	1968	11040	71675;71676;71677;71678;71679;71680;71681	96992;96993;96994;96995;96996;96997;96998	96997	1990		7	
EGVLTGSPEQK	1	Unmodified	1143.5772	0.57716749	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.679	20.164	2	4.7034E-13	17066	160511_QHF_FH_JSI9i_1	147.4	113.45			1.702	1.2497	31.814	4	0	Linear	1.7196	1.429	NaN	1	0	Median	0.92467	1.093	NaN	1	0	Median	1.4907	1.4764	NaN	1	0	Median	0.73034	0.74235	NaN	1	0	Median	779290000	383840000	395450000	202800000	80427000	122380000	192040000	100450000	91592000	199590000	87004000	112590000	184850000	115960000	68892000	11654	3860	11041	71682;71683;71684;71685	96999;97000;97001;97002;97003;97004;97005;97006	97006			8	
EGVMVAK	1	Unmodified	732.38401	0.38401075	2636;1595	Q15149;P46783;Q9NQ39	PLEC;RPS10;RPS10P5	Plectin;40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			2	3	3	4	18.025	13.829	2	0.0048398	11977	160511_QHF_FH_JSI10i_1	97.071	52.46			0.94888	1.055	55.654	12	2	Median	2.1628	1.8338	19.345	2	1	Median	0.87726	1.0552	14.02	3	0	Median	1.1719	1.1405	13.428	3	0	Median	0.51219	0.54749	35.975	4	1	Median	9825800000	4543400000	5282400000	2333400000	645230000	1688200000	2496600000	1111800000	1384800000	2608600000	1136200000	1472500000	2387200000	1650200000	737000000	11655	2636;1595	11042	71686;71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697	97007;97008;97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023	97014			17	
EGVMVAK	1	Oxidation (M)	748.37893	0.37892537	2636;1595	Q15149;P46783;Q9NQ39	PLEC;RPS10;RPS10P5	Plectin;40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	no	no	0	0	1	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	15.006	14.552	2	0.025101	12010	160511_QHF_FH_JSI11i_1	62.714	28.976			0.75712	0.77163	18.039	4	0	Median	1.13	0.94404	NaN	1	0	Median	0.52042	0.60736	NaN	1	0	Median	0.79414	0.77139	NaN	1	0	Median	0.72183	0.77186	NaN	1	0	Median	1317600000	698280000	619280000	334250000	126250000	208000000	246770000	173660000	73114000	377610000	171060000	206550000	358920000	227300000	131620000	11656	2636;1595	11042	71698;71699;71700;71701	97024;97025;97026	97024			3	
EGVMVAKK	2	Unmodified	860.47897	0.47897377	2636;1595	Q15149;P46783;Q9NQ39	PLEC;RPS10;RPS10P5	Plectin;40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	9.4847	9.5578	2;3	0.030334	6841	160511_QHF_FH_JSI12i_3	32.841	17.401			0.78868	0.77384	80.428	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4251	0.40152	NaN	1	1	Median	1.4632	1.4797	80.358	3	3	Median	588440000	327550000	260890000	0	0	0	0	0	0	57467000	39288000	18179000	530970000	288260000	242710000	11657	2636;1595	11043	71702;71703;71704;71705	97027;97028;97029;97030	97029			4	
EGVMVAKK	2	Acetyl (K);Oxidation (M)	918.48445	0.48445308	2636;1595	Q15149;P46783;Q9NQ39	PLEC;RPS10;RPS10P5	Plectin;40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	no	no	1	0	1	1		By MS/MS	By MS/MS		13	0						2					1	1		23.696	16.191	2	0.052644	10393	160513_QHF_FH_JSI11Kac_3	38.419	23.048			0.54837	0.56952	61.211	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77269	0.87798	NaN	1	0	Median	0.38917	0.36943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3822300	2354200	1468100	0	0	0	1727800	913490	814340	2094500	1440700	653800	0	0	0	11658	2636;1595	11043	71706;71707	97031	97031			0	
EGVMYVGAK	1	Unmodified	952.4688	0.46880301	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.72	4		2			1	2			2	3	2	2	32.567	28.884	2	4.4439E-06	25896	160511_QHF_FH_JSI12i_1	119.29	97.52			0.84803	0.94962	45.527	9	1	Median	1.1952	0.9745	3.658	2	0	Median	0.70832	0.82878	14.899	3	0	Median	1.4467	1.4164	2.348	2	1	Median	0.45174	0.48416	64.944	2	0	Median	3490600000	1681400000	1809200000	629110000	265380000	363730000	1047000000	570400000	476620000	890380000	332170000	558210000	924040000	513430000	410610000	11659	599	11044	71708;71709;71710;71711;71712;71713;71714;71715;71716	97032;97033;97034;97035;97036;97037;97038;97039;97040;97041;97042;97043;97044	97035			13	
EGVMYVGAK	1	Oxidation (M)	968.46372	0.46371763	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	10	5.2	1					3				1	1	1	1	27.744	21.777	2	0.0043805	11282	160513_QHF_FH_JSI10Kac_3	65.038	45.561			1.0524	1.0953	18.258	4	0	Median	1.8222	1.4855	NaN	1	0	Median	0.85496	1.0171	NaN	1	0	Median	1.205	1.1796	NaN	1	0	Median	0.91912	1.0024	NaN	1	0	Median	146110000	62584000	83530000	135570000	57327000	78246000	2760200	1265200	1495000	3762500	1505400	2257200	4018500	2486500	1532000	11660	599	11044	71717;71718;71719;71720	97045;97046;97047	97047		226	3	
EGVQGPLNVSLSEEGK	1	Unmodified	1641.821	0.82097959	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.276	57.623	2	6.6392E-08	51046	160511_QHF_FH_JSI9i_1	136.6	111.17			1.1643	0.80975	24.153	4	4	Linear	1.2097	0.99914	NaN	1	1	Median	0.70688	0.82791	NaN	1	1	Median	0.80444	0.79199	NaN	1	1	Median	0.53098	0.55988	NaN	1	1	Median	954340000	530610000	423730000	217290000	96100000	121190000	250260000	148870000	101390000	239320000	129800000	109520000	247470000	155840000	91633000	11661	1016	11045	71721;71722;71723;71724	97048;97049;97050;97051	97051			4	
EGVREVFETATR	0	Unmodified	1392.6997	0.69974224	2016	P62745	RHOB	Rho-related GTP-binding protein RhoB	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.846	41.312	2	0.0013406	34497	160511_QHF_FH_JSI10i_3	80.763	54.249			0.97891	1.1303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97891	1.1303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36999000	19888000	17111000	0	0	0	36999000	19888000	17111000	0	0	0	0	0	0	11662	2016	11046	71725	97052	97052			1	
EGVSAAFAVK	1	Unmodified	977.5182	0.51819605	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	3	2	2	41.394	40.445	2	1.8116E-06	35864	160511_QHF_FH_JSI9i_1	134.26	111.19			0.76556	0.70945	15.564	10	7	Median	0.76699	0.64678	8.8209	3	2	Plateau	0.62871	0.71755	14.946	3	2	Median	0.89307	0.87712	0.23474	2	2	Median	0.57553	0.61253	10.854	2	1	Median	2922100000	1801000000	1121100000	560320000	331080000	229240000	941820000	599730000	342090000	734750000	382840000	351910000	685230000	487360000	197860000	11663	3218	11047	71726;71727;71728;71729;71730;71731;71732;71733;71734;71735	97053;97054;97055;97056;97057;97058;97059;97060;97061;97062	97059			10	
EGVSSTTPAK	1	Unmodified	975.48729	0.48728985	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.5041	8.3814	2	0.00097501	6122	160511_QHF_FH_JSI11i_1	80.755	44.875			0.36839	0.35835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36839	0.35835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	266270000	224440000	41838000	0	0	0	0	0	0	266270000	224440000	41838000	0	0	0	11664	4771	11048	71736	97063	97063			1	
EGVTAMHK	1	Unmodified	871.42219	0.42218717	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.3		7						1		1	2	3	2	8.1733	7.7349	2;3	0.0045395	5461	160511_QHF_FH_JSI12i_2	75.738	52.719			0.52375	0.57633	72.287	7	6	Median	1.2349	1.0713	NaN	1	0	Median	0.87956	1.069	119.92	2	2	Median	0.72652	0.75127	89.667	2	2	Median	0.42911	0.47046	28.706	2	2	Median	477220000	290820000	186400000	42607000	19512000	23094000	128390000	72384000	56004000	184870000	116160000	68708000	121360000	82766000	38589000	11665	2957;5035	11049	71737;71738;71739;71740;71741;71742;71743;71744	97064;97065;97066;97067;97068;97069;97070;97071	97064			8	
EGVVAAAEK	1	Unmodified	872.46035	0.46034682	1472	P37840	SNCA	Alpha-synuclein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4	5.2	3					1				1	1	1	1	13.544	13.004	2	0.0038267	10562	160511_QHF_FH_JSI9i_1	68.846	34.593			1.1759	1.1546	19.033	3	0	Plateau	1.4218	1.1546	NaN	1	0	Median	0.97251	1.1544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79538	0.83027	NaN	1	0	Median	520860000	242850000	278020000	226600000	95515000	131090000	218200000	101830000	116370000	0	0	0	76059000	45499000	30559000	11666	1472	11050	71745;71746;71747;71748	97072;97073;97074	97074			3	
EGVVECSFVK	1	Unmodified	1152.5485	0.5485099	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.13	4	1				2	2			1	1	4	3	45.353	40.613	2	2.664E-07	36483	160511_QHF_FH_JSI11i_1	113.74	89.972			0.96606	0.95977	24.038	9	3	Median	2.2539	1.836	NaN	1	1	Median	0.9855	1.1665	NaN	1	0	Median	1.0386	0.99835	14.642	4	1	Median	0.80535	0.95749	7.5565	3	1	Plateau	1755100000	1002700000	752410000	183390000	66368000	117020000	490420000	287850000	202570000	607610000	369010000	238600000	473650000	279440000	194220000	11667	1504	11051	71749;71750;71751;71752;71753;71754;71755;71756;71757	97075;97076;97077;97078;97079;97080;97081;97082;97083;97084	97075			10	
EGVVGAVEK	1	Unmodified	886.476	0.47599688	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.61	8	1				3	1			3	5	2	3	21.329	18.034	1;2	5.4408E-06	16991	160511_QHF_FH_JSI11i_1	115.71	74.062			0.68845	0.76315	37.715	12	3	Median	1.3712	1.1139	9.3154	3	1	Median	0.55586	0.66112	23.124	4	2	Median	1.5381	1.493	4.1764	2	0	Median	0.64556	0.71016	6.4685	3	0	Median	4858400000	2252500000	2605900000	1280900000	550850000	730010000	941350000	537710000	403640000	1407500000	477490000	929970000	1228700000	686420000	542310000	11668	599	11052	71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770	97085;97086;97087;97088;97089;97090;97091;97092;97093;97094;97095;97096;97097;97098	97086			13	
EGVVGAVEKTK	2	Acetyl (K)	1157.6292	0.62920306	599	O76070	SNCG	Gamma-synuclein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	41.892	32.94	2	0.011268	18392	160513_QHF_FH_JSI12Kac_3	57.532	29.79			0.75259	0.71455	24.566	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80165	0.94696	NaN	1	0	Median	0.75259	0.71455	NaN	1	0	Median	0.53612	0.58044	NaN	1	0	Median	9240100	5809700	3430400	0	0	0	3305800	2054200	1251600	2244200	1314900	929280	3690200	2440700	1249500	11669	599	11053	71771;71772;71773	97099;97100	97100	309		2	
EGVVGPELHHKLLSAER	1	Acetyl (K)	1912.0167	0.016659702	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		61.444	51.736	3;4	0.00048398	28054	160513_QHF_FH_JSI11Kac_6	93.226	81.534			0.47572	0.45447	33.23	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47572	0.45447	33.23	2	1	Median	NaN	NaN	NaN	0	0	Median	19009000	11727000	7282400	0	0	0	0	0	0	19009000	11727000	7282400	0	0	0	11670	2636	11054	71774;71775	97101;97102	97102	2599		2	
EGVVHGVATVAEK	1	Unmodified	1294.6881	0.68811492	1472	P37840	SNCA	Alpha-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.19		6	1					4		2	2	5	2	28.728	25.666	2;3	3.5001E-05	21316	160511_QHF_FH_JSI11i_2	116.74	103.15			1.266	1.3032	33.705	8	2	Median	1.4127	1.2457	NaN	1	0	Median	1.4802	1.8169	34.728	2	1	Median	1.266	1.3032	9.055	4	1	Median	0.61807	0.67849	NaN	1	0	Median	274050000	116960000	157090000	36745000	11826000	24918000	62520000	22455000	40065000	141340000	62427000	78915000	33443000	20248000	13195000	11671	1472	11055	71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786	97103;97104;97105;97106;97107;97108;97109;97110;97111;97112;97113;97114;97115	97108			12	
EGVYELATFQMK	1	Unmodified	1414.6803	0.68025235	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		74.267	73.544	2	1.7122E-05	64838	160511_QHF_FH_JSI9i_2	129.16	90.8			0.78877	0.72975	3.571	2	2	Median	0.8269	0.71155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75239	0.74841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52307000	24647000	27660000	19944000	8635200	11309000	0	0	0	32362000	16012000	16351000	0	0	0	11672	5278	11056	71787;71788	97116;97117	97116			2	
EGWAPATFIDK	1	Unmodified	1233.603	0.60298831	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.043	68.747	2	0.025844	59185	160511_QHF_FH_JSI12i_2	48.284	35.757			0.20426	0.21469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20426	0.21469	NaN	1	1	Median	13510000	9314500	4195300	0	0	0	0	0	0	0	0	0	13510000	9314500	4195300	11673	11	11057	71789	97118	97118			1	
EGWPLDIR	0	Unmodified	984.50288	0.50288033	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	65.869	65.153	2	0.0088887	55780	160511_QHF_FH_JSI12i_2	56.547	39.583			0.73837	0.78523	44.612	7	2	Median	1.6632	1.4056	NaN	1	0	Median	0.74161	0.89119	17.901	2	1	Median	0.86605	0.85819	26.13	2	0	Median	0.4107	0.4327	3.5262	2	1	Median	542080000	284010000	258080000	71789000	25582000	46207000	147460000	71786000	75669000	214780000	109520000	105250000	108070000	77120000	30946000	11674	4315	11058	71790;71791;71792;71793;71794;71795;71796	97119;97120;97121;97122;97123;97124	97120			6	
EGWPSSAYGVTK	1	Unmodified	1280.6037	0.60371659	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	45.807	45.061	2	0.00016868	39615	160511_QHF_FH_JSI10i_2	82.489	65.393			1.6406	1.3965	74.364	7	4	Median	2.7356	2.2921	70.077	2	1	Median	0.83789	1.0096	2.6303	2	0	Median	1.3091	1.2748	133.74	2	2	Median	2.4927	2.6516	NaN	1	1	Median	3597700000	1130500000	2467200000	824040000	129680000	694360000	781160000	413800000	367360000	1064400000	284880000	779570000	928020000	302130000	625890000	11675	1092	11059	71797;71798;71799;71800;71801;71802;71803;71804;71805	97125;97126;97127;97128;97129;97130;97131;97132;97133;97134;97135	97135			11	
EGYAWAEDK	1	Unmodified	1067.456	0.45598972	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			31.555	30.754	2	2.0667E-05	27292	160511_QHF_FH_JSI10i_1	106.68	80.946			1.1244	1.112	26.123	2	0	Median	1.6323	1.3375	NaN	1	0	Median	0.77449	0.92441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	312230000	168960000	143270000	90342000	35790000	54552000	221890000	133170000	88720000	0	0	0	0	0	0	11676	5596	11060	71806;71807	97136;97137;97138	97137			3	
EGYDFHSSSEFEIVK	1	Unmodified	1772.7893	0.78934511	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	62.756	61.449	2	1.8073E-07	54237	160511_QHF_FH_JSI10i_2	91.855	78.427			0.53495	0.59302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53495	0.59302	NaN	1	1	Median	20573000	14912000	5661400	0	0	0	0	0	0	0	0	0	20573000	14912000	5661400	11677	1941	11061	71808;71809	97139;97140	97140			2	
EGYENFFDK	1	Unmodified	1147.4822	0.48220447	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	54.819	54.073	2	0.00056765	48903	160511_QHF_FH_JSI11i_1	78.264	62.602			1.8912	1.8167	26.614	3	0	Plateau	1.426	1.1728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8912	1.8219	NaN	1	0	Median	1.077	1.1285	NaN	1	0	Median	136840000	60102000	76738000	33877000	15889000	17989000	0	0	0	73402000	30483000	42920000	29560000	13731000	15830000	11678	4637	11062	71810;71811;71812	97141;97142;97143	97141			3	
EGYGGFR	0	Unmodified	784.3504	0.35040244	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	18.425	17.807	2	0.018515	15253	160511_QHF_FH_JSI10i_2	59.795	59.795			1.013	1.0186	30.377	5	0	Median	1.5226	1.3076	NaN	1	0	Median	0.76125	0.95588	NaN	1	0	Median	1.0801	1.0572	5.2606	2	0	Median	0.51629	0.58098	NaN	1	0	Median	568050000	289070000	278990000	108310000	42446000	65862000	105250000	55097000	50155000	239240000	120030000	119210000	115260000	71494000	43763000	11679	4940	11063	71813;71814;71815;71816;71817	97144;97145	97145			2	
EGYIERK	1	Unmodified	893.46068	0.46068117	5271	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.6039	7.6039	2	0.01575	5276	160511_QHF_FH_JSI11i_3	64.567	19.875			1.0845	1.0188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0845	1.0188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22024000	8943800	13080000	0	0	0	0	0	0	22024000	8943800	13080000	0	0	0	11680	5271	11064	71818	97146	97146			1	
EGYKFQPTK	2	Acetyl (K)	1138.5659	0.56587452	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.191	33.055	2	0.023161	19954	160513_QHF_FH_JSI11Kac_4	51.445	41.031			0.31881	0.31984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31881	0.31984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3863000	3134600	728380	0	0	0	0	0	0	3863000	3134600	728380	0	0	0	11681	2947	11065	71819	97147	97147	2721		1	
EGYKFYPPK	2	Acetyl (K)	1169.5757	0.57571092	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	59.091	48.312	2	9.5482E-05	27569	160513_QHF_FH_JSI11Kac_4	118.5	102.61			0.47254	0.46619	45.883	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86334	1.0271	NaN	1	0	Median	0.47254	0.46619	NaN	1	0	Median	0.41851	0.46173	NaN	1	0	Median	51945000	33184000	18761000	0	0	0	14795000	8141700	6653700	24458000	16186000	8272300	12691000	8855800	3835100	11682	1206	11066	71820;71821;71822	97148;97149;97150;97151;97152;97153;97154;97155	97152	1076		8	
EGYNNPPISGENLIGLSR	0	Unmodified	1928.9592	0.9592044	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.761	72.487	2	1.5243E-11	65699	160511_QHF_FH_JSI10i_1	148.72	126.39			0.85804	0.89503	16.542	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86876	1.0061	NaN	1	0	Median	0.84747	0.79624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88598000	44137000	44461000	0	0	0	39086000	22374000	16712000	49512000	21763000	27749000	0	0	0	11683	5674	11067	71823;71824	97156;97157;97158	97157			3	
EGYSGVGLLSR	0	Unmodified	1136.5826	0.58258722	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.45	2	4	2				2	4	1	3	4	5	3	52.785	47.727	2	3.2248E-30	42303	160511_QHF_FH_JSI10i_2	195.36	125.55			1.0054	1.0822	31.272	14	1	Median	1.6377	1.3954	8.9757	2	0	Median	0.90118	1.0897	19.248	4	0	Median	1.1348	1.1828	17.855	5	0	Median	0.56574	0.63573	14.518	3	1	Median	3038400000	1520000000	1518400000	472160000	155830000	316330000	849530000	452630000	396900000	1243800000	588490000	655330000	472870000	323050000	149820000	11684	1294	11068	71825;71826;71827;71828;71829;71830;71831;71832;71833;71834;71835;71836;71837;71838;71839	97159;97160;97161;97162;97163;97164;97165;97166;97167;97168;97169;97170;97171;97172;97173;97174;97175;97176;97177;97178;97179;97180	97177			22	
EGYTSPK	1	Unmodified	780.36538	0.3653838	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.6399	7.4044	2	0.044649	5140	160511_QHF_FH_JSI11i_1	45.081	10.979			1.5701	1.8121	26.509	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5701	1.9216	NaN	1	0	Median	1.873	1.8121	NaN	1	0	Median	1.1227	1.1823	NaN	1	0	Median	725410000	345700000	379710000	0	0	0	282230000	148650000	133580000	216710000	80591000	136120000	226470000	116460000	110010000	11685	1615	11069	71840;71841;71842	97181	97181			1	
EGYVLTAVEGTIGDFK	1	Unmodified	1697.8512	0.85121708	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	1	3	98.286	98.012	2;3	6.0776E-08	85691	160511_QHF_FH_JSI11i_2	136.38	114.83			0.72498	0.7624	52.683	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.698	1.7014	NaN	1	1	Median	0.66034	0.6934	13.416	2	2	Median	57515000	30124000	27391000	0	0	0	0	0	0	27018000	11281000	15738000	30496000	18843000	11653000	11686	2638;2895	11070	71843;71844;71845;71846;71847	97182;97183;97184;97185;97186	97185			5	
EGYVPQEEVPVYENK	1	Unmodified	1778.8363	0.8362953	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	54.611	53.998	2	1.258E-07	48845	160511_QHF_FH_JSI11i_1	134.08	108.64			1.0578	1.2164	27.834	5	2	Median	1.7936	1.4812	NaN	1	0	Median	1.0393	1.2164	NaN	1	0	Median	1.1927	1.1627	17.668	2	2	Median	0.69388	0.72354	NaN	1	0	Median	802720000	387040000	415680000	158040000	54972000	103070000	160470000	78206000	82268000	336060000	159760000	176300000	148140000	94104000	54039000	11687	4378	11071	71848;71849;71850;71851;71852;71853	97187;97188;97189;97190;97191;97192;97193;97194;97195;97196	97187			10	
EHAAIILWNTTSWK	1	Unmodified	1668.8624	0.86239089	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	4	2	78.51	69.959	2;3	1.226E-81	38808	160513_QHF_FH_JSI10Kac_6	242.82	222.04			1.1165	1.1433	17.6	10	5	Median	1.244	1.0488	13.308	2	1	Median	0.77246	0.89941	6.0489	2	0	Median	1.3321	1.2626	15.404	4	4	Median	1.0875	1.171	4.492	2	0	Median	849230000	395450000	453790000	120490000	48888000	71597000	252230000	132250000	119980000	315300000	138280000	177020000	161230000	76029000	85196000	11688	3050	11072	71854;71855;71856;71857;71858;71859;71860;71861;71862;71863	97197;97198;97199;97200;97201;97202;97203;97204;97205;97206;97207;97208;97209	97208			13	
EHAALEPR	0	Unmodified	921.46683	0.46682918	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		2	2	8.48	7.9995	2;3	0.00045656	5681	160511_QHF_FH_JSI11i_2	102.51	61.593			0.96858	0.97523	6.7358	4	3	Median	1.0849	0.95161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96127	0.97505	NaN	1	1	Median	0.93272	1.038	8.7935	2	1	Median	843790000	399640000	444140000	126180000	49736000	76446000	0	0	0	271260000	124730000	146530000	446340000	225180000	221170000	11689	4315	11073	71864;71865;71866;71867;71868;71869	97210;97211;97212;97213;97214;97215;97216	97216			7	
EHALAQAELLK	1	Unmodified	1221.6717	0.67173657	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	38.663	37.631	2;3	2.9263E-05	32006	160511_QHF_FH_JSI11i_2	98.943	86.153			1.0575	0.96148	21.595	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.78241	0.96442	NaN	1	0	Median	0.93502	0.95854	NaN	1	0	Median	0.92802	1.0092	37.085	2	1	Median	124380000	59489000	64887000	0	0	0	27465000	14596000	12869000	40252000	17944000	22308000	56660000	26949000	29711000	11690	252	11074	71870;71871;71872;71873;71874	97217;97218;97219;97220;97221;97222;97223	97222			7	
EHALLAYTLGVK	1	Unmodified	1313.7343	0.73433683	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.6		15	11					6	14	12	13	12	9	64.851	60.711	2;3	8.5066E-26	31688	160513_QHF_FH_JSI9Kac_6	145.91	136.26			0.8879	0.89624	57.168	43	15	Median	0.98656	0.82381	22.353	10	3	Median	0.64439	0.76519	63.726	13	4	Median	0.74152	0.747	77.001	12	7	Median	1.0316	1.1107	34.363	8	1	Median	57978000000	28691000000	29287000000	9378300000	3844900000	5533400000	16751000000	9530500000	7221000000	20512000000	10105000000	10407000000	11336000000	5211200000	6125100000	11691	2072;2231	11075	71875;71876;71877;71878;71879;71880;71881;71882;71883;71884;71885;71886;71887;71888;71889;71890;71891;71892;71893;71894;71895;71896;71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913;71914;71915;71916;71917;71918;71919;71920	97224;97225;97226;97227;97228;97229;97230;97231;97232;97233;97234;97235;97236;97237;97238;97239;97240;97241;97242;97243;97244;97245;97246;97247;97248;97249;97250;97251;97252;97253;97254;97255;97256;97257;97258;97259;97260;97261;97262;97263;97264;97265;97266;97267;97268;97269;97270;97271;97272;97273;97274;97275;97276;97277;97278;97279;97280;97281;97282;97283;97284;97285;97286;97287;97288;97289;97290;97291;97292;97293;97294;97295;97296;97297;97298;97299;97300;97301;97302;97303;97304;97305;97306;97307;97308;97309;97310;97311;97312;97313;97314;97315;97316;97317;97318;97319;97320;97321;97322;97323;97324;97325;97326;97327;97328;97329;97330;97331;97332;97333;97334;97335;97336;97337;97338;97339;97340;97341;97342;97343;97344;97345;97346;97347;97348;97349;97350;97351;97352;97353;97354;97355;97356;97357;97358;97359;97360;97361;97362;97363;97364	97335			141	
EHALLAYTLGVKQLIVGVNK	2	Acetyl (K)	2207.2678	0.26778901	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	96.056	86.642	3	2.4726E-34	47138	160513_QHF_FH_JSI12Kac_6	163.35	141.75			0.70689	0.76155	195.23	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22074	0.2117	255.55	2	2	Median	0.70689	0.76155	NaN	1	0	Median	293600000	164500000	129100000	0	0	0	0	0	0	150710000	95675000	55036000	142890000	68828000	74062000	11692	2072;2231	11076	71921;71922;71923	97365;97366;97367;97368	97367	2145;2146		4	
EHALTSGTIK	1	Unmodified	1055.5611	0.56112349	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.95		8	1					4		4	4	3	2	15.609	12.325	2;3	1.6377E-05	10240	160511_QHF_FH_JSI11i_2	111.46	85.561			0.97407	0.99793	57.853	13	8	Median	1.7479	1.4498	25.229	4	2	Median	0.53294	0.6434	50.174	4	2	Median	1.5795	1.5334	71.841	3	3	Median	0.64312	0.701	55.196	2	1	Median	1383600000	762080000	621540000	301240000	125680000	175570000	441370000	298660000	142710000	530780000	270120000	260650000	110230000	67623000	42611000	11693	2658	11077	71924;71925;71926;71927;71928;71929;71930;71931;71932;71933;71934;71935;71936	97369;97370;97371;97372;97373;97374;97375;97376;97377;97378;97379;97380	97375			11	
EHAMLAK	1	Unmodified	798.40581	0.40580882	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	8.3642	7.9535	2	0.042042	5717	160511_QHF_FH_JSI12i_2	46.37	38.217			0.85167	0.91659	5.2814	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85703	0.88299	NaN	1	0	Median	0.84635	0.95147	NaN	1	0	Median	915970000	464200000	451770000	0	0	0	0	0	0	573010000	277400000	295620000	342960000	186800000	156160000	11694	1069;3467	11078	71937;71938	97381;97382;97383;97384	97382			4	
EHAMLAKTAGVK	2	Acetyl (K)	1296.686	0.68600643	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									7		1	3	3	37.933	28.691	2;3	0.0012927	15163	160513_QHF_FH_JSI12Kac_6	65.563	54.398			1.5541	1.6372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5541	1.6372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22035000	18571000	3463800	0	0	0	1128700	0	1128700	15888000	14444000	1444200	5017900	4126900	891000	11695	1069;3467	11079	71939;71940;71941;71942;71943;71944;71945	97385;97386;97387;97388;97389;97390;97391	97390	905		7	
EHAPSIIFMDEIDSIGSSR	0	Unmodified	2102.9943	0.99426928	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	1	4	4	91.161	90.855	2;3	1.1092E-16	78697	160511_QHF_FH_JSI12i_3	138.05	127.68			1.26	1.274	22.9	9	6	Median	1.4766	1.2759	NaN	1	0	Median	0.83663	1.0325	NaN	1	0	Median	1.3186	1.3011	33.284	4	3	Median	1.2262	1.274	8.2942	3	3	Median	750120000	337580000	412540000	43035000	15402000	27633000	70550000	37953000	32597000	270380000	115050000	155330000	366150000	169180000	196980000	11696	1984	11080	71946;71947;71948;71949;71950;71951;71952;71953;71954;71955	97392;97393;97394;97395;97396;97397;97398;97399;97400;97401;97402	97401			10	
EHASGSGAQSEAAGR	0	Unmodified	1413.6233	0.62328283	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6	5.66		4					2			1	1	3	1	4.8361	3.003	2;3	8.5619E-07	2248	160511_QHF_FH_JSI9i_2	136.38	125.85			1.1005	1.0517	19.048	5	1	Median	1.2025	1.0137	NaN	1	0	Median	0.66535	0.79937	NaN	1	0	Median	1.1788	1.1563	13.399	2	1	Median	1.1005	1.2624	NaN	1	0	Median	252110000	126180000	125930000	50359000	26287000	24072000	63298000	34047000	29251000	84530000	38579000	45950000	53924000	27271000	26654000	11697	2587	11081	71956;71957;71958;71959;71960;71961	97403;97404;97405;97406;97407;97408	97407			5	
EHASGSGAQSEAAGRTEPTGPK	1	Unmodified	2123.9832	0.98318732	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			9.775	9.2755	3	0.0031895	7230	160511_QHF_FH_JSI10i_2	42.64	35.912			0.52187	0.66309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52187	0.66309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11974000	9337800	2635800	0	0	0	11974000	9337800	2635800	0	0	0	0	0	0	11698	2587	11082	71962	97409	97409			1	
EHASSLASSGLK	1	Unmodified	1185.599	0.59896556	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			15.594	14.876	2	0.012654	12363	160511_QHF_FH_JSI10i_2	54.608	41.555			1.1528	1.1848	23.885	2	2	Median	1.1355	1.0007	NaN	1	1	Median	1.1704	1.4029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43152000	16983000	26168000	16692000	6211400	10481000	26459000	10772000	15688000	0	0	0	0	0	0	11699	3395	11083	71963;71964	97410;97411	97411			2	
EHASSLASSGLKK	2	Unmodified	1313.6939	0.69392858	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.348	11.437	3	0.021155	8693	160511_QHF_FH_JSI12i_3	36.107	23.531			0.23791	0.25251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23791	0.25251	NaN	1	1	Median	74466000	53079000	21387000	0	0	0	0	0	0	0	0	0	74466000	53079000	21387000	11700	3395	11084	71965	97412	97412			1	
EHCKVEYQIK	2	Acetyl (K)	1374.6602	0.66018561	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		36.259	26.376	3	0.043904	15454	160513_QHF_FH_JSI11Kac_5	34.773	25.261			0.32613	0.31935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32613	0.31935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4066500	3302600	763880	0	0	0	0	0	0	4066500	3302600	763880	0	0	0	11701	4027	11085	71966	97413	97413	3036		1	
EHDPVGQMVNNPK	1	Unmodified	1463.6827	0.68271197	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.93	5	11	1				3	1		4	6	5	6	26.493	24.282	2;3	1.4079E-10	20104	160511_QHF_FH_JSI11i_2	151.15	129.68			1.0977	1.0138	29.11	17	4	Median	1.1105	0.95759	19.101	3	1	Median	0.67582	0.83847	48.529	5	2	Median	0.96713	0.9929	7.0436	4	1	Linear	1.1579	1.1721	22.368	5	0	Median	2300500000	1096800000	1203700000	369290000	164540000	204750000	626500000	292860000	333640000	784500000	378530000	405970000	520210000	260830000	259380000	11702	1844	11086	71967;71968;71969;71970;71971;71972;71973;71974;71975;71976;71977;71978;71979;71980;71981;71982;71983;71984;71985;71986;71987	97414;97415;97416;97417;97418;97419;97420;97421;97422;97423;97424;97425;97426;97427;97428;97429;97430;97431;97432;97433;97434;97435;97436;97437;97438;97439;97440;97441;97442	97433			27	
EHDPVGQMVNNPK	1	Oxidation (M)	1479.6776	0.67762659	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3.09	3.45		10					1			3	4		4	24.548	22.85	2;3	0.00011809	20915	160511_QHF_FH_JSI10i_2	99.653	82.627			1.0929	1.295	49.777	8	2	Median	0.60006	0.5392	NaN	1	0	Median	0.99724	1.2004	45.479	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2028	1.3352	34.027	4	1	Median	365190000	145960000	219220000	62097000	21685000	40412000	132330000	53012000	79316000	0	0	0	170760000	71267000	99494000	11703	1844	11086	71988;71989;71990;71991;71992;71993;71994;71995;71996;71997;71998	97443;97444;97445;97446;97447;97448;97449;97450;97451	97448		1518	8	
EHDQLIEK	1	Unmodified	1010.5033	0.50327426	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		11.665	11.46	2	0.0049157	8859	160511_QHF_FH_JSI11i_2	65.465	46.371			1.3792	1.3987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3792	1.3987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134390000	56575000	77817000	0	0	0	0	0	0	134390000	56575000	77817000	0	0	0	11704	231	11087	71999;72000	97452;97453	97453			2	
EHEADTANMSDK	1	Unmodified	1346.5409	0.54085834	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.2301	6.8943	2	1.1308E-11	4783	160511_QHF_FH_JSI10i_1	154.24	132.16			0.91153	0.93757	19.098	4	0	Median	0.86711	0.72107	NaN	1	0	Median	0.93258	1.1141	NaN	1	0	Median	0.89095	0.86566	NaN	1	0	Median	1.0047	1.0155	NaN	1	0	Median	429690000	214960000	214730000	95154000	44266000	50889000	130480000	73811000	56666000	89874000	43656000	46218000	114190000	53232000	60958000	11705	4518	11088	72001;72002;72003;72004	97454;97455;97456;97457;97458;97459;97460	97458			7	
EHEADTANMSDK	1	Oxidation (M)	1362.5358	0.53577296	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	4.6901	-2.4839	3	0.0068983	1419	160513_QHF_FH_JSI12Kac_3	41.242	38.019			1.1082	1.2089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1082	1.2089	NaN	1	0	Median	2494400	1319200	1175200	0	0	0	0	0	0	0	0	0	2494400	1319200	1175200	11706	4518	11088	72005	97461	97461		2489	1	
EHEEAVSVDR	0	Unmodified	1169.5313	0.53127993	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	3	4	3	9.9494	9.5431	2;3	3.4399E-11	7042	160511_QHF_FH_JSI11i_2	150.08	98.221			0.94559	1.0477	10.835	11	2	Median	1.4929	1.2946	6.1444	2	0	Median	0.83327	1.0258	3.7402	3	0	Median	0.95538	0.96544	9.3361	3	1	Plateau	0.92189	1.0342	6.8091	3	1	Plateau	1155200000	573400000	581750000	196210000	81714000	114500000	273930000	151510000	122420000	405110000	200950000	204150000	279900000	139220000	140680000	11707	2354	11089	72006;72007;72008;72009;72010;72011;72012;72013;72014;72015;72016;72017	97462;97463;97464;97465;97466;97467;97468;97469;97470;97471;97472;97473;97474;97475;97476;97477	97473			15	
EHELLEQQK	1	Unmodified	1152.5775	0.57750184	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	1	3	13.123	12.487	2;3	4.2032E-06	9623	160511_QHF_FH_JSI11i_2	120.15	91.981			0.8613	0.91294	69.445	8	1	Median	1.0422	0.90926	93.918	2	0	Median	1.3607	1.6455	90.986	2	0	Median	0.85785	0.86643	NaN	1	0	Median	0.86478	0.96196	73.983	3	1	Median	788970000	389990000	398990000	112290000	48233000	64056000	199980000	96689000	103290000	168780000	78764000	90019000	307920000	166300000	141620000	11708	2412	11090	72018;72019;72020;72021;72022;72023;72024;72025	97478;97479;97480;97481;97482;97483;97484;97485;97486	97483			9	
EHEVFQR	0	Unmodified	943.45118	0.45117911	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0			By matching	By MS/MS	2.33	0.471		2	1									1	2	9.8102	9.5465	2	0.012815	6779	160511_QHF_FH_JSI12i_3	68.787	50.056			1.142	1.1535	35.002	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2197	1.2376	NaN	1	0	Median	0.73087	0.77367	31.287	2	0	Median	271760000	137330000	134430000	0	0	0	0	0	0	110900000	49185000	61713000	160860000	88148000	72713000	11709	456	11091	72026;72027;72028	97487;97488;97489	97489			3	
EHEVTIFVR	0	Unmodified	1128.5928	0.59275797	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.8		8	2						7	4	4	3	6	41.159	37.17	2;3	0.00010928	31940	160511_QHF_FH_JSI12i_2	78.149	63.475			1.062	1.0926	23.378	16	1	Median	1.2602	1.07	28.404	4	0	Median	0.98956	1.1627	16.572	3	0	Median	1.1159	1.123	13.954	3	0	Median	0.9642	1.027	28.041	6	1	Median	1082100000	509570000	572520000	221390000	95418000	125980000	271280000	133480000	137800000	262300000	114620000	147680000	327110000	166050000	161070000	11710	1798	11092	72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040;72041;72042;72043;72044;72045	97490;97491;97492;97493;97494;97495;97496;97497;97498;97499;97500;97501;97502;97503;97504;97505;97506;97507;97508	97490			19	
EHFQDDVFNEK	1	Unmodified	1406.6103	0.61025853	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	2	3	3	38.062	37.064	2;3	2.9263E-05	32736	160511_QHF_FH_JSI10i_2	98.943	64.69			0.91308	0.94575	14.724	9	2	Median	1.035	0.89402	6.6267	2	1	Median	0.83455	1.0206	11.72	2	0	Median	1.1949	1.2172	11.162	2	0	Median	0.84571	0.94575	8.2676	3	1	Median	553170000	293760000	259410000	77957000	35256000	42701000	126130000	75619000	50516000	203670000	109490000	94183000	145410000	73397000	72011000	11711	1566	11093	72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056	97509;97510;97511;97512;97513;97514;97515;97516;97517;97518;97519;97520;97521;97522	97521			13	
EHGAFDAVK	1	Unmodified	972.46649	0.46649483	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	15.863	15.216	2;3	0.00067613	12377	160511_QHF_FH_JSI12i_2	76.221	55.94			0.7717	0.80978	5.5021	8	0	Median	1.0246	0.87464	2.3164	2	0	Median	0.65064	0.79848	2.4299	2	0	Median	0.77323	0.78124	0.23987	2	0	Median	0.74411	0.84452	6.383	2	0	Median	1953800000	1110500000	843350000	345930000	146400000	199530000	455500000	266700000	188810000	556040000	355970000	200060000	596350000	341400000	254950000	11712	1004	11094	72057;72058;72059;72060;72061;72062;72063;72064	97523;97524;97525;97526;97527;97528;97529;97530;97531;97532;97533;97534;97535;97536	97526			14	
EHGAVAVER	0	Unmodified	966.48829	0.4882929	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	7.425	7.0114	2	0.0006826	4639	160511_QHF_FH_JSI11i_2	76.1	52.576			1.1552	1.1615	6.5489	3	0	Median	1.5054	1.2915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1552	1.1615	NaN	1	0	Median	1.0446	1.146	NaN	1	0	Median	230310000	109850000	120460000	77034000	32047000	44988000	0	0	0	122360000	60833000	61528000	30915000	16975000	13939000	11713	5453	11095	72065;72066;72067	97537	97537			1	
EHGLIFMETSAK	1	Unmodified	1361.6649	0.66493664	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.88		11	2						4	3	4	4	6	52.575	48.996	2;3	3.3551E-06	42120	160511_QHF_FH_JSI11i_2	90.434	87.567			0.87208	1.0821	44.122	13	8	Median	1.2639	1.0875	45.152	3	1	Median	0.86585	1.0821	13.934	3	2	Median	0.87208	0.87932	57.876	3	2	Median	0.96433	1.0749	56.206	4	3	Median	2131300000	1042600000	1088600000	347210000	162150000	185070000	490460000	266960000	223500000	533750000	255650000	278110000	759860000	357890000	401970000	11714	1930	11096	72068;72069;72070;72071;72072;72073;72074;72075;72076;72077;72078;72079;72080;72081;72082;72083;72084	97538;97539;97540;97541;97542;97543;97544;97545;97546;97547;97548;97549;97550;97551;97552;97553;97554;97555;97556;97557;97558;97559;97560;97561;97562;97563;97564;97565	97552			28	
EHGLIFMETSAK	1	Oxidation (M)	1377.6599	0.65985126	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	43.918	34.825	2;3	0.00058975	18578	160513_QHF_FH_JSI9Kac_6	64.121	57.505			1.3292	1.1313	50.115	3	2	Plateau	1.3292	1.1313	NaN	1	0	Median	0.42303	0.48285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1154	1.1684	NaN	1	1	Median	34417000	17107000	17310000	14514000	4688200	9825400	12693000	9351200	3342200	0	0	0	7209600	3067200	4142400	11715	1930	11096	72085;72086;72087;72088;72089;72090;72091;72092	97566;97567;97568;97569;97570;97571;97572;97573;97574	97568		1598	9	
EHGLNPDVVQNIQDICNSK	1	Unmodified	2179.0328	0.032780052	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	65.309	64.566	3	1.0528E-10	55823	160511_QHF_FH_JSI12i_3	121.26	97.215			0.6361	0.73054	37.953	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.90234	1.1037	NaN	1	0	Median	0.84116	0.85628	NaN	1	0	Median	1.5232	1.5879	39.897	2	1	Median	165290000	70384000	94908000	0	0	0	38706000	19766000	18941000	59053000	29158000	29895000	67533000	21460000	46073000	11716	3250	11097	72093;72094;72095;72096	97575;97576;97577;97578;97579	97579			5	
EHGPENIVMAIAGNK	1	Unmodified	1578.7824	0.78242601	2461	Q13636	RAB31	Ras-related protein Rab-31	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		63.53	63.53	3	0.010585	56498	160511_QHF_FH_JSI11i_3	44.925	32.543			1.1703	1.0932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1703	1.0932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35607000	15870000	19737000	0	0	0	0	0	0	35607000	15870000	19737000	0	0	0	11717	2461	11098	72097	97580	97580			1	
EHGSQFFYLPIIK	1	Unmodified	1577.8242	0.82421447	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	88.54	87.587	3	0.0078315	76767	160511_QHF_FH_JSI11i_2	42.209	34.485			0.93237	0.97757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93237	0.97757	NaN	1	0	Median	7224300	4048700	3175600	0	0	0	0	0	0	0	0	0	7224300	4048700	3175600	11718	4659	11099	72098;72099	97581;97582	97582			2	
EHGVLGGKLR	1	Acetyl (K)	1106.6196	0.61964142	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	37.786	28.467	2	0.057147	15766	160513_QHF_FH_JSI11Kac_6	41.448	28.411			0.59876	0.63269	5.4779	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61689	0.60866	NaN	1	0	Median	0.58117	0.65768	NaN	1	0	Median	6564200	3974000	2590200	0	0	0	0	0	0	3805100	2309900	1495200	2759200	1664100	1095000	11719	739	11100	72100;72101	97583	97583			1	
EHGVPILISEIHPGQPADR	0	Unmodified	2064.0752	0.075237214	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			3									2	1	60.829	60.737	3;4	0.00037361	53853	160511_QHF_FH_JSI11i_3	52.784	35.706			1.1834	1.1	28.022	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5059	1.3932	33.425	2	0	Median	1.0768	1.0735	NaN	1	0	Median	205300000	95192000	110100000	0	0	0	0	0	0	127720000	56778000	70940000	77579000	38414000	39164000	11720	4870	11101	72102;72103;72104	97584;97585	97584			1	
EHIAASVSIPSEK	1	Unmodified	1366.7092	0.70924429	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.55		6						1		1	2	3	1	39.449	37.016	2;3	2.8653E-05	32310	160511_QHF_FH_JSI9i_2	82.171	63.859			1.03	1.0647	52.063	6	2	Median	NaN	NaN	NaN	0	0	Median	0.88684	1.1002	21.703	2	1	Median	1.0234	1.0413	54.483	3	1	Median	1.845	2.0425	NaN	1	0	Median	320430000	161420000	159010000	0	0	0	134170000	76293000	57876000	165190000	77084000	88105000	21071000	8042300	13028000	11721	1585	11102	72105;72106;72107;72108;72109;72110;72111	97586;97587;97588;97589;97590;97591;97592;97593	97588			7	
EHIKNPDWR	1	Acetyl (K)	1235.6047	0.60471964	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		35.055	25.648	2;3	0.002452	14339	160513_QHF_FH_JSI11Kac_6	85.377	65.048			0.45294	0.44161	105.75	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45294	0.44161	105.75	2	2	Median	NaN	NaN	NaN	0	0	Median	13960000	10660000	3300000	0	0	0	0	0	0	13960000	10660000	3300000	0	0	0	11722	2585	11103	72112;72113	97594;97595	97594	2561		2	
EHIMQMLQNPDWK	1	Unmodified	1668.7752	0.77523214	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	3	4	5	67.983	67.466	2;3	3.032E-17	59464	160511_QHF_FH_JSI11i_3	216.03	202.6			1.058	1.0614	16.092	9	4	Median	1.0794	0.92865	NaN	1	0	Median	0.82824	1.0013	9.1702	2	1	Median	1.0341	0.99712	18.485	4	3	Median	1.1777	1.1922	16.434	2	0	Median	876800000	444640000	432160000	52970000	25829000	27141000	188060000	107470000	80591000	338520000	165040000	173480000	297250000	146300000	150950000	11723	127	11104	72114;72115;72116;72117;72118;72119;72120;72121;72122;72123;72124;72125;72126;72127	97596;97597;97598;97599;97600;97601;97602;97603;97604;97605;97606;97607;97608;97609;97610;97611;97612;97613;97614	97599			18	
EHINSVSAMK	1	Unmodified	1114.5441	0.54409322	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	15.307	14.66	2	0.0002695	11599	160511_QHF_FH_JSI11i_2	91.265	75.121			0.66066	0.72501	67.028	4	4	Median	1.917	1.6269	NaN	1	1	Median	0.2745	0.33681	NaN	1	1	Median	0.55044	0.57517	NaN	1	1	Median	0.79296	0.91388	NaN	1	1	Median	258530000	145990000	112540000	65216000	19554000	45662000	48866000	33508000	15358000	77849000	53533000	24316000	66604000	39397000	27207000	11724	2517	11105	72128;72129;72130;72131	97615;97616;97617;97618	97617			4	
EHIQLNESK	1	Unmodified	1096.5513	0.55128709	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.329	13.117	2	0.054828	10332	160511_QHF_FH_JSI11i_2	43.282	19.853			0.98991	1.0078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98991	1.0078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27660000	12104000	15556000	0	0	0	0	0	0	27660000	12104000	15556000	0	0	0	11725	1435	11106	72132	97619	97619			1	
EHKPGPIGK	2	Unmodified	961.53451	0.53451481	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	5.7037	5.5702	2;3	0.0068796	3507	160511_QHF_FH_JSI10i_3	37.191	28.233			0.79244	0.81076	19.316	6	0	Median	NaN	NaN	NaN	0	0	Median	0.64124	0.72958	32.505	2	0	Median	0.98469	0.91605	16.396	2	0	Median	0.77483	0.79065	2.6804	2	0	Median	1270900000	670120000	600800000	0	0	0	200180000	109060000	91121000	440660000	203740000	236920000	630080000	357320000	272760000	11726	5646	11107	72133;72134;72135;72136;72137;72138	97620;97621	97620			2	
EHLAFLPQVDSAVVAEFGR	0	Unmodified	2084.0691	0.069089203	3373	Q86X83	COMMD2	COMM domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	100.28	100.08	3	0.0001082	86001	160511_QHF_FH_JSI12i_2	51.566	42.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11727	3373	11108	72139	97622	97622			1	
EHLALLAVPMVPLQIILPLIISK	1	Unmodified	2520.5481	0.54810996	125	O00400	SLC33A1	Acetyl-coenzyme A transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.86	95.402	3	1.5943E-14	54278	160513_QHF_FH_JSI9Kac_6	116.94	108.85			1.4109	1.4113	34.298	2	0	Median	2.1177	1.7987	NaN	1	0	Median	0.94	1.1074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	340830000	176740000	164090000	95055000	33486000	61568000	245770000	143250000	102520000	0	0	0	0	0	0	11728	125	11109	72140;72141	97623;97624;97625	97623			3	
EHLEALLK	1	Unmodified	951.53893	0.53893149	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.405	37.953	3	0.0062628	32453	160511_QHF_FH_JSI11i_2	50.607	17.766			0.80551	0.79038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80551	0.79038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13163000	6633100	6530100	0	0	0	0	0	0	13163000	6633100	6530100	0	0	0	11729	5541	11110	72142	97626	97626			1	
EHLELFWSR	0	Unmodified	1215.6037	0.60365701	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7.33	6.13			2						1	1		2		65.445	62.571	3	0.0052598	55665	160511_QHF_FH_JSI11i_3	43.282	25.846			1.9362	1.8283	43.505	3	3	Median	2.4726	2.046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3777	1.2942	48.857	2	2	Median	NaN	NaN	NaN	0	0	Median	48619000	22919000	25700000	6288600	1946000	4342600	0	0	0	42330000	20973000	21357000	0	0	0	11730	2155	11111	72143;72144;72145	97627;97628;97629	97627			3	
EHLELLK	1	Unmodified	880.50182	0.5018177	3247	Q7Z2E3	APTX	Aprataxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	32.17	31.271	3	0.0044891	26355	160511_QHF_FH_JSI11i_2	58.981	48.108			1.2052	1.2766	42.29	4	2	Median	NaN	NaN	NaN	0	0	Median	0.92964	1.11	69.977	2	2	Median	1.0904	1.1359	NaN	1	0	Median	1.332	1.4348	NaN	1	0	Median	85447000	44735000	40712000	0	0	0	31050000	15805000	15245000	36809000	18476000	18333000	17588000	10454000	7134100	11731	3247	11112	72146;72147;72148;72149;72150	97630;97631;97632;97633;97634;97635;97636	97634			7	
EHLHIVK	1	Unmodified	874.50249	0.5024864	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	11.381	11.47	2;3	0.030314	8619	160511_QHF_FH_JSI12i_3	28.423	8.9456			2.0713	2.0757	39.329	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0713	2.0757	39.329	2	1	Median	250170000	85026000	165150000	0	0	0	0	0	0	0	0	0	250170000	85026000	165150000	11732	1648	11113	72151;72152	97637;97638;97639	97637			3	
EHLILVSQLEQLHR	0	Unmodified	1713.9526	0.95260288	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	67.639	67.49	4	0.0017228	58447	160511_QHF_FH_JSI12i_3	50.897	38.611			2.5449	2.4813	45.259	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6122	3.4171	NaN	1	1	Median	1.7929	1.8017	NaN	1	0	Median	59866000	20025000	39841000	0	0	0	0	0	0	23653000	5073500	18580000	36213000	14951000	21262000	11733	4398	11114	72153;72154	97640;97641	97641			2	
EHLLDQLK	1	Unmodified	994.54475	0.54474515	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			37.837	36.874	3	0.017966	32406	160511_QHF_FH_JSI10i_2	34.253	17.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11734	1779	11115	72155	97642	97642			1	
EHLLKYEYQPFAGK	2	Acetyl (K)	1763.8883	0.88827129	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		71.41	61.958	2;3	2.6601E-16	33580	160513_QHF_FH_JSI11Kac_6	178.32	136.92			0.38001	0.36549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38001	0.36549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129010000	89085000	39928000	0	0	0	0	0	0	129010000	89085000	39928000	0	0	0	11735	472	11116	72156;72157	97643;97644	97644	239;240		2	
EHLLLAR	0	Unmodified	850.50249	0.5024864	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	4	3	3	27.103	23.655	2	0.0078525	19792	160511_QHF_FH_JSI11i_3	85.89	48.915			0.95168	0.93422	36.365	12	1	Median	1.0217	0.86428	10.907	2	0	Median	0.87369	1.0093	57.383	4	1	Median	0.96288	0.93487	2.6959	3	0	Median	0.89969	0.9789	36.867	3	0	Median	2112200000	1033500000	1078700000	150750000	70093000	80658000	406570000	204880000	201690000	828940000	393270000	435670000	725920000	365210000	360710000	11736	1658	11117	72158;72159;72160;72161;72162;72163;72164;72165;72166;72167;72168;72169	97645;97646;97647;97648;97649;97650;97651;97652	97646			8	
EHLLQGLLPDVQVPTSVK	1	Unmodified	1972.0993	0.099326699	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		2	0		3								1	1	1		92.711	92.32	3	0.0077739	81836	160511_QHF_FH_JSI10i_2	38.377	34.773			1.0475	0.92829	20.65	3	0	Median	1.0475	0.92829	NaN	1	0	Median	0.61632	0.74918	NaN	1	0	Median	1.0921	1.1321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62709000	33477000	29232000	16008000	8696300	7311900	25178000	18734000	6443900	21523000	6047300	15476000	0	0	0	11737	28	11118	72170;72171;72172	97653;97654	97654			2	
EHLLQSNIGTGEK	1	Unmodified	1424.726	0.72595699	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	2	2	28.037	27.59	2	0.00045489	24224	160511_QHF_FH_JSI10i_2	91.937	72.694			1.0804	1.2391	79.799	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55875	0.70475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.089	2.1785	NaN	1	1	Median	34044000	13408000	20636000	0	0	0	11568000	9066300	2501400	4760400	0	4760400	17716000	4341400	13374000	11738	2988	11119	72173;72174;72175;72176;72177	97655;97656;97657;97658;97659	97658			5	
EHLLTNHLK	1	Unmodified	1103.6087	0.60874239	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	17.562	17.582	2;3	0.0024621	14812	160511_QHF_FH_JSI11i_3	52.725	19.367			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11739	962	11120	72178;72179	97660;97661	97660			2	
EHLLVSIPLLINHLQAESIVVHTYAAHALER	0	Unmodified	3485.9147	0.91470782	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			95.524	89.804	4;5	5.9753E-36	51781	160513_QHF_FH_JSI10Kac_6	179.66	164.37			0.66618	0.78133	3.0387	2	1	Median	NaN	NaN	NaN	0	0	Median	0.66618	0.78133	3.0387	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	960380000	591860000	368520000	0	0	0	960380000	591860000	368520000	0	0	0	0	0	0	11740	1844	11121	72180;72181	97662;97663;97664	97663			3	
EHLQHMTEK	1	Unmodified	1151.5393	0.53934219	5087	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	6.4242	6.5219	2;3	0.0010496	4135	160511_QHF_FH_JSI12i_3	81.338	68.711			0.72312	0.73181	10.502	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72312	0.73181	10.502	2	1	Median	132920000	74795000	58128000	0	0	0	0	0	0	0	0	0	132920000	74795000	58128000	11741	5087	11122	72182;72183;72184	97665;97666;97667	97667			3	
EHLQHMTEK	1	Oxidation (M)	1167.5343	0.53425682	5087	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	4.5345	4.627	2	0.0022756	2103	160511_QHF_FH_JSI12i_3	68.735	17.857			1.475	1.5274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.475	1.5274	NaN	1	0	Median	22477000	7875400	14602000	0	0	0	0	0	0	0	0	0	22477000	7875400	14602000	11742	5087	11122	72185	97668	97668		2580	1	
EHLRDFLVQIK	1	Unmodified	1396.7827	0.78268401	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				67.352	65.862	3	0.0050713	54080	160511_QHF_FH_JSI9i_3	45.433	30.557			0.92137	0.76054	NaN	1	0	Median	0.92137	0.76054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21790000	11888000	9901500	21790000	11888000	9901500	0	0	0	0	0	0	0	0	0	11743	231	11123	72186	97669	97669			1	
EHLYFETVTIK	1	Unmodified	1378.7133	0.71326704	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		7							7	4	3	3	4	63.792	58.868	2;3	0.00024341	32290	160513_QHF_FH_JSI10Kac_6	67.153	57.365			0.96995	0.91793	25.8	14	6	Median	1.0417	0.88836	26.519	4	2	Median	0.69118	0.81859	41.876	3	1	Plateau	1.0338	1.0593	34.471	3	1	Median	0.87039	0.94398	11.87	4	2	Median	418950000	200940000	218010000	81343000	35487000	45856000	94687000	42771000	51915000	134040000	69440000	64604000	108870000	53238000	55635000	11744	2638;2895	11124	72187;72188;72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200	97670;97671;97672;97673;97674;97675;97676;97677;97678;97679;97680;97681;97682;97683;97684;97685;97686;97687	97686			17	
EHMDAINHDTK	1	Unmodified	1309.5721	0.57209888	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				9.3014	8.7852	2	0.008453	6627	160511_QHF_FH_JSI9i_2	50.292	41.429			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11745	5479	11125	72201	97688	97688			1	
EHMGDILYK	1	Unmodified	1104.5274	0.52738052	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	36.511	35.485	2;3	0.013402	31083	160511_QHF_FH_JSI10i_2	56.434	48.202			0.98084	1.1066	10.131	5	3	Median	1.281	1.1066	NaN	1	1	Median	1.0354	1.2557	NaN	1	1	Median	0.95146	0.97553	NaN	1	0	Median	0.94964	1.0516	7.7706	2	1	Median	304670000	149170000	155500000	43062000	20841000	22221000	53744000	27450000	26294000	96605000	47568000	49037000	111260000	53312000	57947000	11746	1479	11126	72202;72203;72204;72205;72206	97689;97690;97691;97692;97693	97693			3	
EHMQPTHPIR	0	Unmodified	1244.6084	0.60842481	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	2.94		12	8						1	5	6	6	4	10.112	9.3107	2;3;4	4.6676E-12	6539	160511_QHF_FH_JSI11i_3	133.81	111.81			0.83552	0.86241	20.603	19	3	Median	0.99161	0.86241	26.259	5	2	Median	0.6114	0.73918	14.982	5	1	Median	0.71704	0.74447	22.392	5	0	Median	0.9899	1.0102	12.172	4	0	Median	3032900000	1503200000	1529700000	303680000	159980000	143700000	370180000	235460000	134710000	989470000	510570000	478900000	1369600000	597170000	772420000	11747	1976	11127	72207;72208;72209;72210;72211;72212;72213;72214;72215;72216;72217;72218;72219;72220;72221;72222;72223;72224;72225;72226;72227	97694;97695;97696;97697;97698;97699;97700;97701;97702;97703;97704;97705;97706;97707;97708;97709;97710;97711;97712;97713;97714;97715;97716;97717;97718	97695			22	
EHMQPTHPIR	0	Oxidation (M)	1260.6033	0.60333943	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	5.459	5.5546	2	6.5192E-14	3093	160511_QHF_FH_JSI12i_3	160.56	143.32			1.1631	1.1649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1631	1.1649	NaN	1	0	Median	93019000	41307000	51712000	0	0	0	0	0	0	0	0	0	93019000	41307000	51712000	11748	1976	11127	72228	97719	97719		1642	1	
EHNGQVTGIDWAPESNR	0	Unmodified	1908.8715	0.87145203	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	2	3	42.865	42.488	2;3	1.5181E-07	36236	160511_QHF_FH_JSI12i_3	125.28	107.91			1.0427	1.0985	8.6648	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0393	1.2878	NaN	1	0	Median	1.0461	1.0734	NaN	1	0	Median	1.0666	1.0973	3.4346	2	1	Median	297130000	151090000	146040000	0	0	0	87264000	44576000	42688000	104820000	52412000	52408000	105050000	54100000	50947000	11749	255	11128	72229;72230;72231;72232;72233;72234	97720;97721;97722;97723;97724;97725;97726	97725			7	
EHNVFQNK	1	Unmodified	1014.4883	0.4882929	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.6	1	6	3							3	1	3	3	9.3963	9.1051	2;3	0.0015998	6296	160511_QHF_FH_JSI12i_3	87.323	59.798			1.1882	1.2116	53.504	9	0	Median	1.1882	1.0103	89.534	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1817	1.2116	3.4148	3	0	Plateau	0.92715	0.94973	19.11	3	0	Median	678570000	304270000	374300000	209990000	98730000	111260000	0	0	0	235630000	100740000	134890000	232940000	104800000	128140000	11750	3328	11129	72235;72236;72237;72238;72239;72240;72241;72242;72243;72244	97727;97728;97729;97730;97731;97732;97733	97732			7	
EHPDPGSKDPEEDYPK	2	Unmodified	1838.7959	0.79588705	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		18.843	18.551	3	0.021504	15126	160511_QHF_FH_JSI11i_2	36.193	25.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11751	5241	11130	72245	97734	97734			1	
EHPFLVK	1	Unmodified	868.48069	0.48068833	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	23.767	23.423	3	0.0068341	19933	160511_QHF_FH_JSI12i_2	49.358	34.577			0.8429	0.83854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8429	0.83854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102350000	49627000	52721000	0	0	0	0	0	0	102350000	49627000	52721000	0	0	0	11752	2094	11131	72246;72247	97735;97736;97737	97735			3	
EHPFVLQSVGGQTLTVFTESSSDK	1	Unmodified	2592.2708	0.27076172	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2.25	0.433		3	1							1	1		2	87.882	87.513	3	5.0449E-17	75795	160511_QHF_FH_JSI12i_3	125.62	110.86			0.93066	0.93641	22.991	3	0	Plateau	0.70329	0.62361	NaN	1	0	Median	0.7414	0.92047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93884	0.93641	NaN	1	0	Median	101600000	58302000	43295000	15663000	8038200	7624400	24489000	13912000	10576000	0	0	0	61446000	36352000	25094000	11753	1045	11132	72248;72249;72250;72251	97738;97739;97740	97739			3	
EHPTVVPSHK	1	Unmodified	1129.588	0.58800695	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	7.9394	7.9394	2;3	0.0022898	5644	160511_QHF_FH_JSI11i_3	57.532	49.607			0.75901	0.69939	5.931	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75901	0.69939	5.931	2	2	Median	NaN	NaN	NaN	0	0	Median	106300000	69105000	37194000	0	0	0	0	0	0	106300000	69105000	37194000	0	0	0	11754	4237	11133	72252;72253;72254	97741;97742;97743	97741			3	
EHPVVISK	1	Unmodified	907.51272	0.51271674	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	12.297	11.764	2	0.007793	9499	160511_QHF_FH_JSI9i_2	55.37	33.823			1.4352	1.4177	55.881	5	3	Median	1.4308	1.2056	NaN	1	0	Median	0.94489	1.1519	100.85	2	2	Median	1.4352	1.4177	NaN	1	0	Median	1.9015	2.0304	NaN	1	1	Median	258000000	113160000	144850000	40113000	15281000	24832000	96007000	51528000	44479000	80882000	31730000	49153000	40999000	14617000	26382000	11755	1296	11134	72255;72256;72257;72258;72259	97744;97745;97746;97747;97748;97749	97746			6	
EHPWEVMPDLYFYRDPEEIEK	1	Unmodified	2721.2421	0.24210413	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.42		4	18						6	1	2	7	18	98.66	96.719	3;4	8.4056E-13	40808	160513_QHF_FH_JSI12Kac_6	108.92	101.64			0.96859	0.97829	23.305	27	8	Median	1.4434	1.2515	NaN	1	0	Median	0.9392	1.0777	37.517	2	1	Median	0.89825	0.87936	28.643	7	2	Median	0.96859	0.98625	19.344	17	5	Median	1102100000	560030000	542060000	67683000	28582000	39101000	94068000	31737000	62332000	147310000	94144000	53167000	793030000	405570000	387460000	11756	917	11135	72260;72261;72262;72263;72264;72265;72266;72267;72268;72269;72270;72271;72272;72273;72274;72275;72276;72277;72278;72279;72280;72281;72282;72283;72284;72285;72286;72287	97750;97751;97752;97753;97754;97755;97756;97757;97758;97759;97760;97761;97762;97763;97764;97765;97766;97767;97768;97769;97770;97771;97772;97773;97774;97775;97776;97777;97778;97779;97780;97781;97782	97780			32	
EHQHEEIQNVR	0	Unmodified	1417.6698	0.66983909	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		8.8359	8.8359	3	0.018657	6495	160511_QHF_FH_JSI11i_3	35.523	32.375			0.89728	0.8096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89728	0.8096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33592000	20340000	13251000	0	0	0	0	0	0	33592000	20340000	13251000	0	0	0	11757	3036	11136	72288	97783	97783			1	
EHQISPGDFPSLRK	1	Unmodified	1609.8213	0.82125436	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.931	43.331	3	0.019285	35437	160511_QHF_FH_JSI9i_3	38.028	22.388			1.4319	1.1575	NaN	1	1	Median	1.4319	1.1575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25327000	7703100	17624000	25327000	7703100	17624000	0	0	0	0	0	0	0	0	0	11758	4727	11137	72289	97784	97784			1	
EHQLKELHPLHR	1	Acetyl (K)	1577.8427	0.8426585	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	1	0	0	1	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	45.255	36.003	4	0.022745	19828	160513_QHF_FH_JSI10Kac_6	30.059	25.939			1.1786	1.2197	12.598	4	0	Median	1.4362	1.2341	NaN	1	0	Median	0.80614	0.95202	NaN	1	0	Median	1.2418	1.2203	NaN	1	0	Median	1.1186	1.2192	NaN	1	0	Median	83128000	44651000	38478000	23896000	11501000	12394000	34745000	21152000	13593000	15365000	7610900	7753800	9123400	4386400	4737100	11759	3477	11138	72290;72291;72292;72293	97785	97785	2865		1	
EHQQALDVLDMEEPINK	1	Unmodified	2007.9572	0.95715549	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.48	102.49	2	0.0037899	89245	160511_QHF_FH_JSI12i_3	54.486	38.349			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11760	2343	11139	72294	97786	97786			1	
EHSAFQAPAVK	1	Unmodified	1183.5986	0.59857163	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	24.759	23.882	2;3	7.4135E-06	20078	160511_QHF_FH_JSI12i_2	109.71	89.194			1.0446	1.0462	15.472	8	0	Median	1.2756	1.0765	14.637	2	0	Median	0.95368	1.1628	22.554	2	0	Median	0.89669	0.89358	0.52804	2	0	Median	1.0521	1.1567	6.5937	2	0	Median	420000000	221280000	198720000	54534000	22804000	31730000	101730000	56878000	44855000	170760000	93737000	77019000	92977000	47861000	45116000	11761	2687	11140	72295;72296;72297;72298;72299;72300;72301;72302;72303	97787;97788;97789;97790;97791;97792;97793;97794;97795;97796;97797;97798;97799	97788			13	
EHSNPNYDK	1	Unmodified	1102.468	0.46795139	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	4.8911	4.4995	2	7.3882E-05	2373	160511_QHF_FH_JSI12i_2	96.034	78.648			0.89488	0.97604	5.9675	4	0	Median	1.2482	1.0519	NaN	1	0	Median	0.81524	0.99427	NaN	1	0	Median	0.95441	0.95814	NaN	1	0	Median	0.83907	0.91329	NaN	1	0	Median	202860000	102270000	100590000	34559000	15860000	18699000	41970000	20494000	21476000	88585000	50580000	38005000	37747000	15339000	22408000	11762	2517	11141	72304;72305;72306;72307	97800;97801;97802;97803;97804	97801			5	
EHSPDEFIK	1	Unmodified	1100.5138	0.51383895	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	27.001	25.725	2	0.011898	21511	160511_QHF_FH_JSI12i_2	48.283	31.507			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11763	2383	11142	72308	97805	97805			1	
EHTALLK	1	Unmodified	810.45995	0.45995289	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	2	3	3	13.007	9.9492	2	0.019031	8367	160511_QHF_FH_JSI11i_3	58.981	42.054			0.98314	0.96579	11.202	12	0	Median	1.1934	0.96579	13.829	4	0	Median	0.82709	0.98085	8.2103	2	0	Median	1.1035	1.1153	13.773	3	0	Median	0.83822	0.88996	5.9352	3	0	Plateau	8009900000	3899400000	4110400000	1557700000	630980000	926750000	1676100000	828490000	847560000	2734600000	1364100000	1370500000	2041400000	1075800000	965620000	11764	1135	11143	72309;72310;72311;72312;72313;72314;72315;72316;72317;72318;72319;72320	97806;97807;97808;97809;97810;97811;97812;97813;97814;97815;97816;97817;97818;97819;97820;97821	97806			16	
EHTAYYIK	1	Unmodified	1023.5025	0.50254598	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	3	1	20.196	16.077	2;3	0.0011783	13102	160511_QHF_FH_JSI11i_2	58.815	43.664			1.1205	1.1906	15.651	8	1	Median	1.5088	1.3425	13.422	2	1	Median	0.91929	1.097	9.8659	2	0	Median	1.0594	1.0853	18.055	3	0	Plateau	0.93587	1.0088	NaN	1	0	Median	601540000	305470000	296070000	104080000	61695000	42384000	129580000	65900000	63680000	361380000	174880000	186500000	6500900	2998800	3502100	11765	1379	11144	72321;72322;72323;72324;72325;72326;72327;72328	97822;97823;97824;97825;97826;97827;97828;97829;97830;97831;97832;97833	97828			11	
EHTAYYIKALSK	2	Acetyl (K)	1464.7613	0.76127986	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		59.573	49.855	2;3	0.0044873	27025	160513_QHF_FH_JSI11Kac_6	54.871	34.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2833700	2833700	0	0	0	0	0	0	0	2833700	2833700	0	0	0	0	11766	1379	11145	72329;72330	97834;97835	97835	1321		2	
EHTDTFNFR	0	Unmodified	1165.5152	0.51523593	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	27.548	26.258	3	0.05685	21994	160511_QHF_FH_JSI12i_2	37.549	27.24			0.92099	1.0195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92099	1.0195	NaN	1	0	Median	20091000	13175000	6916400	0	0	0	0	0	0	0	0	0	20091000	13175000	6916400	11767	5207	11146	72331	97836	97836			0	
EHTLAWK	1	Unmodified	883.4552	0.45520186	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		6								2		1	3	20.5	19.571	2;3	0.0060269	16343	160511_QHF_FH_JSI12i_2	50.966	40.093			0.95528	0.99982	31.941	6	1	Median	1.0344	0.90008	19.778	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57385	0.57261	NaN	1	0	Median	1.0119	1.1172	20.818	3	0	Median	361550000	184390000	177160000	113790000	55568000	58224000	0	0	0	60383000	36902000	23481000	187380000	91920000	95460000	11768	1205	11147	72332;72333;72334;72335;72336;72337	97837;97838;97839;97840	97839			4	
EHTTSSSVSK	1	Unmodified	1061.4989	0.49891717	5172	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	1.8008	1.4297	2;3	0.0029013	539	160511_QHF_FH_JSI11i_2	37.968	30.322			1.312	1.3591	20.594	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1923	1.1749	NaN	1	0	Median	1.4438	1.5721	NaN	1	1	Median	63185000	24132000	39053000	0	0	0	0	0	0	47201000	16960000	30241000	15984000	7172500	8811300	11769	5172	11148	72338;72339	97841;97842	97842			2	
EHVEAIK	1	Unmodified	824.43922	0.43921744	659	O95229	ZWINT	ZW10 interactor	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	11.366	10.867	2	0.04145	8246	160511_QHF_FH_JSI11i_2	46.663	0			1.6342	1.6361	41.448	3	0	Median	2.566	2.2263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6342	1.6361	NaN	1	0	Median	0.91834	0.98002	NaN	1	0	Median	176070000	75743000	100330000	28468000	9013100	19455000	0	0	0	106770000	48575000	58197000	40834000	18155000	22680000	11770	659	11149	72340;72341;72342	97843	97843			1	
EHVEEISELFYDAK	1	Unmodified	1707.7992	0.79918151	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	73.872	72.853	2;3	0.00062119	64511	160511_QHF_FH_JSI10i_2	68.044	57.88			2.4097	2.7998	8.9157	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1233	2.6287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7348	2.9819	NaN	1	1	Median	98047000	33459000	64589000	0	0	0	79251000	27271000	51979000	0	0	0	18797000	6187300	12610000	11771	5496	11150	72343;72344;72345	97844;97845;97846	97845			3	
EHVEPVFGFPQFVR	0	Unmodified	1686.8518	0.85182621	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	83.298	82.691	2;3	0.00030973	73100	160511_QHF_FH_JSI9i_2	64.224	57.496			0.98042	1.0516	36.577	7	2	Median	1.0095	0.87334	NaN	1	0	Median	0.93524	1.1566	NaN	1	0	Median	1.3023	1.2406	58.064	2	0	Median	1.6662	1.6864	43.569	3	2	Plateau	209100000	94928000	114180000	30146000	15663000	14483000	28492000	15895000	12597000	69091000	31184000	37907000	81375000	32186000	49189000	11772	565	11151	72346;72347;72348;72349;72350;72351;72352;72353	97847;97848;97849;97850;97851;97852;97853;97854;97855	97850			9	
EHVGTDQFGNK	1	Unmodified	1230.5629	0.56291441	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	14.749	14.179	2;3	5.7279E-07	11695	160511_QHF_FH_JSI10i_2	113.62	94.528			0.93847	0.89078	16.612	7	0	Median	1.0018	0.85612	11.413	2	0	Median	0.73159	0.88894	0.29338	2	0	Median	1.193	1.2118	0.70078	2	0	Median	0.77345	0.88887	NaN	1	0	Median	518380000	279510000	238870000	135530000	75133000	60402000	124800000	79662000	45138000	203950000	95870000	108080000	54102000	28849000	25253000	11773	3500	11152	72354;72355;72356;72357;72358;72359;72360;72361	97856;97857;97858;97859;97860;97861;97862;97863;97864;97865;97866	97864			11	
EHVIEALR	0	Unmodified	965.52943	0.52942943	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	23.834	23.063	2;3	0.0049375	19671	160511_QHF_FH_JSI9i_2	67.169	46.615			0.99988	1.009	20.91	9	1	Median	0.90508	0.79712	13.974	2	0	Median	0.93241	1.1302	15.434	2	0	Median	1.0638	1.0891	9.4472	3	0	Plateau	0.6857	0.78108	7.7027	2	1	Median	1160400000	554670000	605690000	203510000	106900000	96616000	239830000	121060000	118770000	466860000	208550000	258310000	250150000	118160000	131990000	11774	1292	11153	72362;72363;72364;72365;72366;72367;72368;72369;72370	97867;97868;97869;97870;97871;97872;97873;97874;97875	97870			6	
EHVIEALRR	0	Unmodified	1121.6305	0.63054046	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							4	2			21.64	20.392	2;3	0.00010643	16509	160511_QHF_FH_JSI9i_3	80.688	17.866			0.92683	0.74911	36.965	6	1	Median	0.78904	0.64525	22.143	4	1	Median	0.99883	1.1769	4.0537	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	568860000	318530000	250330000	472920000	266830000	206090000	95941000	51696000	44245000	0	0	0	0	0	0	11775	1292	11154	72371;72372;72373;72374;72375;72376	97876;97877;97878;97879;97880;97881;97882	97880			7	
EHVKPLFNMEDK	2	Acetyl (K)	1527.7392	0.73916421	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		63.553	52.633	3	0.036118	28628	160513_QHF_FH_JSI11Kac_5	36.944	29.4			0.081568	0.079365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.081568	0.079365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2064400	2000500	63853	0	0	0	0	0	0	2064400	2000500	63853	0	0	0	11776	2475	11155	72377	97883	97883			1	
EHVKWVHAEMVNK	2	Acetyl (K)	1647.8191	0.81914587	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		48.231	39.075	3;4	0.01596	21485	160513_QHF_FH_JSI11Kac_6	42.52	38.277			0.096739	0.095785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.096739	0.095785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7333700	3724500	3609100	0	0	0	3311300	0	3311300	4022400	3724500	297860	0	0	0	11777	1579	11156	72378;72379;72380;72381	97884;97885;97886;97887	97884	1594		4	
EHVLAYFLPEAPAELLQIFDEAALEVVLAMYPK	1	Unmodified	3728.9416	0.941559	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			106.32	100.6	3;4	8.764E-68	59642	160513_QHF_FH_JSI10Kac_6	182.51	168.03			0.9409	1.1214	33.071	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9409	1.1214	33.071	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259990000	116280000	143710000	0	0	0	259990000	116280000	143710000	0	0	0	0	0	0	11778	1674	11157	72382;72383	97888;97889;97890	97889			3	
EHVLHCQFSAWYPFFR	0	Unmodified	2122.9836	0.98358543	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	83.553	74.111	3	0.0090732	39423	160513_QHF_FH_JSI12Kac_6	58.246	48.588			2.0263	2.1184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0263	2.1184	NaN	1	0	Median	33144000	8928100	24216000	0	0	0	0	0	0	0	0	0	33144000	8928100	24216000	11779	566	11158	72384	97891	97891			0	
EHVMNEVDTNK	1	Unmodified	1314.5874	0.5874146	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	14.955	14.104	2	0.0045529	11203	160511_QHF_FH_JSI12i_2	64.297	44.093			4.3912	4.9002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3912	4.9002	NaN	1	1	Median	15150000	1768300	13382000	0	0	0	0	0	0	0	0	0	15150000	1768300	13382000	11780	2100	11159	72385	97892	97892			1	
EHVNVVFIGHVDAGK	1	Unmodified	1619.842	0.8419898	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			57.125	48.294	3	0.0002398	26476	160513_QHF_FH_JSI10Kac_6	72.583	60.223			1.3013	1.3302	13.478	2	1	Median	1.3993	1.2093	NaN	1	1	Median	1.2102	1.4632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34114000	15492000	18622000	13478000	5706100	7771600	20636000	9785700	10850000	0	0	0	0	0	0	11781	1069;3467	11160	72386;72387	97893;97894	97894			2	
EHVVAASK	1	Unmodified	839.45012	0.45011648	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.25	5.63		3						1		2		1	1	5.3604	2.7119	2;3	0.001145	2771	160511_QHF_FH_JSI11i_2	93.429	45.255			1.1329	1.2943	37.113	3	1	Plateau	0.82592	0.6724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3403	1.403	NaN	1	0	Median	0.95766	1.0592	NaN	1	1	Median	1405700000	347230000	1058500000	295440000	3040400	292400000	0	0	0	731260000	314050000	417210000	379030000	30143000	348890000	11782	40	11161	72388;72389;72390;72391	97895;97896;97897;97898;97899	97898			5	
EHWNPAIVALVYNVLK	1	Unmodified	1865.02	0.019954166	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	96.845	87.54	3	0.00011044	49882	160513_QHF_FH_JSI9Kac_6	76.151	65.363			1.0358	0.92224	11.613	3	0	Plateau	0.91294	0.77935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0411	0.9738	NaN	1	0	Median	0.84943	0.92224	NaN	1	0	Median	351230000	181080000	170150000	99478000	63337000	36141000	0	0	0	192350000	85927000	106420000	59398000	31813000	27585000	11783	2735	11162	72392;72393;72394	97900;97901	97901			2	
EHWNPTIVALVYNVLK	1	Unmodified	1895.0305	0.030518853	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		96.372	88.894	2;3	2.7972E-11	49800	160513_QHF_FH_JSI9Kac_6	122.93	97.996			0.84792	0.77275	17.473	4	1	Linear	0.99614	0.83662	NaN	1	0	Median	0.81601	0.95212	19.626	2	1	Median	0.75762	0.71994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	701040000	392190000	308850000	184800000	92160000	92641000	282290000	173860000	108430000	233950000	126170000	107780000	0	0	0	11784	2640	11163	72395;72396;72397;72398	97902;97903;97904;97905;97906	97903			5	
EHYLEDILAK	1	Unmodified	1229.6292	0.62920306	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	62.265	61.182	2	0.040998	52745	160511_QHF_FH_JSI12i_2	37.508	26.679			0.52798	0.61861	41.998	2	1	Median	NaN	NaN	NaN	0	0	Median	0.37069	0.45966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.752	0.8325	NaN	1	0	Median	57848000	42577000	15272000	0	0	0	23974000	18519000	5455900	0	0	0	33874000	24058000	9815800	11785	3221	11164	72399;72400	97907;97908;97909	97908			3	
EHYPNGVCTVYGK	1	Unmodified	1522.6875	0.68746299	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	29.978	29.137	3	0.0024502	24693	160511_QHF_FH_JSI12i_2	47.915	43.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11786	1606	11165	72401;72402	97910;97911	97910			2	
EHYVDLK	1	Unmodified	902.44978	0.44978213	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	6.46	2	9	7					9	4	7	7	8	9	21.12	16.832	2;3	0.0030359	14008	160511_QHF_FH_JSI12i_2	63.054	41.754			0.92484	0.96171	32.68	29	4	Median	1.2723	1.0529	18.542	7	1	Median	0.92484	1.1249	43.211	7	1	Median	0.909	0.89587	24.935	7	1	Median	0.77201	0.84963	34.405	8	1	Median	8939500000	4005400000	4934100000	1559700000	655580000	904110000	1986100000	1036100000	949980000	3334400000	1382800000	1951600000	2059300000	930890000	1128400000	11787	1079	11166	72403;72404;72405;72406;72407;72408;72409;72410;72411;72412;72413;72414;72415;72416;72417;72418;72419;72420;72421;72422;72423;72424;72425;72426;72427;72428;72429;72430;72431;72432;72433	97912;97913;97914;97915;97916;97917;97918;97919;97920;97921;97922;97923;97924;97925;97926;97927;97928;97929;97930;97931;97932;97933;97934;97935;97936;97937;97938;97939;97940;97941;97942;97943;97944;97945;97946;97947;97948;97949;97950;97951;97952;97953;97954;97955;97956;97957;97958;97959;97960;97961;97962;97963;97964;97965;97966;97967	97915			56	
EHYVDLKDRPFFAGLVK	2	Acetyl (K)	2075.084	0.084010986	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		81.52	72.206	4	5.7929E-07	39717	160513_QHF_FH_JSI11Kac_6	105.06	91.437			0.33361	0.31688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33361	0.31688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74048000	55535000	18513000	0	0	0	0	0	0	74048000	55535000	18513000	0	0	0	11788	1079	11167	72434	97968	97968	919		1	
EIAAVFQDNR	0	Unmodified	1161.5778	0.57783619	3297	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	44.155	43.358	2	3.9636E-05	37304	160511_QHF_FH_JSI11i_2	105.2	71.817			0.8646	0.90422	48.069	5	3	Median	0.58088	0.50423	NaN	1	0	Median	1.1203	1.3066	NaN	1	0	Median	0.52904	0.54181	NaN	1	1	Median	1.0495	1.1314	31.701	2	2	Median	428180000	215550000	212630000	78333000	37116000	41217000	136570000	55195000	81373000	95025000	56147000	38878000	118250000	67090000	51164000	11789	3297	11168	72435;72436;72437;72438;72439;72440	97969;97970;97971;97972;97973;97974;97975	97974			7	
EIADLGEALATAVIPQWQK	1	Unmodified	2052.0892	0.089155943	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	101.87	101.76	3	7.5583E-10	92361	160511_QHF_FH_JSI12i_1	119.46	104.61			1.0586	1.0094	22.262	8	2	Median	1.1277	0.93064	19.994	2	1	Median	0.91452	1.1045	32.589	2	0	Median	1.0238	1.019	18.601	2	0	Median	1.1024	1.1883	31.585	2	1	Median	2964500000	1510000000	1454400000	463880000	188820000	275060000	892310000	463610000	428700000	757000000	377540000	379470000	851260000	480050000	371210000	11790	1664	11169	72441;72442;72443;72444;72445;72446;72447;72448	97976;97977;97978;97979;97980;97981;97982;97983;97984;97985	97980			10	
EIADYLAAGK	1	Unmodified	1049.5393	0.53932542	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	48.637	48.004	2	8.0091E-05	42704	160511_QHF_FH_JSI9i_1	87.308	46.426			0.73985	0.73682	46.506	6	5	Median	0.83671	0.70926	NaN	1	0	Median	0.6542	0.76546	NaN	1	1	Median	0.82863	0.79084	72.595	2	2	Median	0.79194	0.83141	73.265	2	2	Median	457350000	265230000	192120000	65974000	33502000	32471000	83683000	48139000	35544000	167440000	97112000	70327000	140250000	86472000	53777000	11791	1813	11170	72449;72450;72451;72452;72453;72454	97986;97987;97988;97989;97990;97991;97992	97992			7	
EIAEAYDVLSDPR	0	Unmodified	1476.7096	0.70963822	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	62.579	62.006	2;3	4.3231E-22	56097	160511_QHF_FH_JSI10i_1	174.4	152.41			1.0493	1.0039	19.315	7	0	Median	1.1665	0.96522	NaN	1	0	Median	0.8213	0.9569	22.621	2	0	Median	1.2644	1.2149	26.978	2	0	Median	1.0084	1.0751	18.043	2	0	Median	1218400000	591950000	626430000	197680000	81629000	116050000	362230000	191060000	171170000	344470000	168340000	176130000	314000000	150920000	163070000	11792	1262	11171	72455;72456;72457;72458;72459;72460;72461;72462;72463	97993;97994;97995;97996;97997;97998;97999;98000	97995			8	
EIAEAYLGK	1	Unmodified	992.51786	0.51786169	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.85	8	4	5			3	3	3		4	7	9	6	42.518	38.974	2	2.3966E-08	34573	160511_QHF_FH_JSI9i_1	157.86	61.607			0.83069	0.89267	44.291	23	10	Median	0.8565	0.70728	28.586	4	2	Median	0.79546	0.91514	42.119	7	3	Median	0.92931	0.93287	53.786	7	3	Median	0.82729	0.89611	47.748	5	2	Median	39633000000	23173000000	16460000000	6783900000	3842300000	2941600000	11437000000	6644600000	4792600000	11628000000	6978100000	4649600000	9784300000	5707900000	4076400000	11793	985	11172	72464;72465;72466;72467;72468;72469;72470;72471;72472;72473;72474;72475;72476;72477;72478;72479;72480;72481;72482;72483;72484;72485;72486;72487;72488;72489	98001;98002;98003;98004;98005;98006;98007;98008;98009;98010;98011;98012;98013;98014;98015;98016;98017;98018;98019;98020;98021;98022;98023;98024;98025;98026;98027;98028;98029;98030;98031;98032;98033;98034;98035;98036;98037;98038;98039;98040	98026			40	
EIAEAYLGYPVTNAVITVPAYFNDSQR	0	Unmodified	3000.4869	0.4869025	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.14	0.35	6	1								1	1	2	3	101.57	101.45	2;3;4	2.2168E-172	92036	160511_QHF_FH_JSI12i_1	411.75	386.16			1.14	1.1045	13.786	7	0	Median	1.1969	0.97773	NaN	1	0	Median	0.92738	1.1045	NaN	1	0	Median	1.0193	1.0123	12.702	2	0	Median	1.2144	1.2964	13.41	3	0	Median	4874300000	2268300000	2605900000	309720000	143300000	166420000	1834100000	878020000	956060000	691880000	311880000	380000000	2038600000	935140000	1103400000	11794	954	11173	72490;72491;72492;72493;72494;72495;72496	98041;98042;98043;98044;98045	98043			5	
EIAEEYGGVMVSFPR	0	Unmodified	1682.7974	0.79740737	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.8	77.981	2	8.7131E-15	68508	160511_QHF_FH_JSI11i_2	162.32	145.69			1.1409	1.2219	10.561	4	1	Median	1.1644	1.0022	NaN	1	1	Median	1.0374	1.2619	NaN	1	0	Median	1.2357	1.2251	NaN	1	0	Median	1.1179	1.2187	NaN	1	0	Median	157450000	76331000	81121000	38396000	22361000	16035000	36194000	17698000	18496000	44622000	18387000	26235000	38239000	17884000	20355000	11795	2147	11174	72497;72498;72499;72500	98046;98047;98048;98049;98050;98051;98052	98050			7	
EIAENALGK	1	Unmodified	943.49746	0.4974606	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.837	24.505	2	0.00055425	21376	160511_QHF_FH_JSI10i_1	78.516	34.069			0.83096	0.80981	21.706	3	0	Median	NaN	NaN	NaN	0	0	Median	0.51749	0.60759	NaN	1	0	Median	0.83096	0.80981	NaN	1	0	Median	0.8765	0.92983	NaN	1	0	Median	1046300000	605740000	440560000	0	0	0	357550000	205170000	152380000	260020000	165980000	94045000	428720000	234590000	194130000	11796	1382	11175	72501;72502;72503	98053;98054;98055	98055			3	
EIAENALGKHK	2	Acetyl (K)	1250.6619	0.66190017	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		34.421	24.66	2;3	0.0031083	14595	160513_QHF_FH_JSI11Kac_5	51.454	45.262			0.28697	0.28225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28697	0.28225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8289700	6472300	1817400	0	0	0	0	0	0	8289700	6472300	1817400	0	0	0	11797	1382	11176	72504;72505	98056;98057	98056	1324		2	
EIAENITK	1	Unmodified	916.48656	0.48656157	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	29.465	21.343	2	0.0043745	18473	160511_QHF_FH_JSI9i_1	67.993	22.275			0.94738	1.0158	40.422	3	2	Median	NaN	NaN	NaN	0	0	Median	0.48112	0.5658	NaN	1	1	Median	1.2428	1.2289	NaN	1	1	Median	0.94738	1.0158	NaN	1	0	Median	28016000	15267000	12749000	0	0	0	4835300	2967900	1867500	14567000	8225400	6341800	8613200	4073800	4539500	11798	1818	11177	72506;72507;72508;72509;72510	98058;98059;98060;98061;98062	98060			5	
EIAETRFEVAQVESLR	0	Unmodified	1875.969	0.96904081	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By matching		By MS/MS	By matching	2.33	0.471		2	1							1		1	1	64.441	63.853	3	0.047948	55775	160511_QHF_FH_JSI11i_2	27.983	10.066			1.7716	1.5625	54.754	3	0	Plateau	1.3268	1.1079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.205	2.2035	NaN	1	0	Median	0.77748	0.74687	NaN	1	0	Median	162180000	55445000	106740000	63922000	29145000	34777000	0	0	0	67235000	9748200	57487000	31023000	16551000	14472000	11799	1016	11178	72511;72512;72513	98063	98063			1	
EIAITHHVK	1	Unmodified	1046.5873	0.58727866	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	15.307	14.375	2;3	0.00071823	10326	160511_QHF_FH_JSI12i_3	80.165	45.341			0.52877	0.61163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52877	0.61163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24282000	16188000	8094400	0	0	0	24282000	16188000	8094400	0	0	0	0	0	0	11800	1755	11179	72514;72515;72516	98064;98065;98066	98066			3	
EIALMNALTVNLHLLMLSFFKPTPK	2	Unmodified	2840.5697	0.56965004	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		101.3	93.726	4	1.8837E-93	56211	160513_QHF_FH_JSI10Kac_6	221.6	198.62			1.0211	1.2067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.2067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1062800000	486300000	576450000	0	0	0	815220000	378700000	436510000	247540000	107600000	139940000	0	0	0	11801	2757	11180	72517;72518	98067;98068;98069	98069			3	
EIALMNALTVNLHLLMLSFFKPTPK	2	Oxidation (M)	2856.5646	0.56456466	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	1	1	By MS/MS		By matching	By matching	16	0									3	1		1	1	99.152	89.821	4	1.4271E-13	51692	160513_QHF_FH_JSI9Kac_6	100.88	74.874			0.98999	0.86921	8.4182	3	0	Median	1.0369	0.86921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98999	0.95899	NaN	1	0	Median	0.75918	0.81107	NaN	1	0	Median	327160000	159420000	167730000	174990000	76921000	98067000	0	0	0	67973000	33008000	34964000	84195000	49491000	34704000	11802	2757	11180	72519;72520;72521	98070;98071	98070		2129	2	
EIALWFR	0	Unmodified	933.50724	0.50723743	2375	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.899	77.697	2	0.019993	67161	160511_QHF_FH_JSI12i_2	57.463	46.095			1.3537	1.4857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3537	1.4857	NaN	1	0	Median	12272000	6020100	6252100	0	0	0	0	0	0	0	0	0	12272000	6020100	6252100	11803	2375	11181	72522	98072	98072			1	
EIAQDFK	1	Unmodified	849.42323	0.42323303	2078;2753;2133	P68431;Q71DI3;Q16695;P84243	HIST1H3A;HIST2H3A;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.1t;Histone H3.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.37	6						4			2	2	2	4	25.614	22.11	2	0.0095257	19344	160511_QHF_FH_JSI11i_1	78.77	14.203			0.57121	0.47494	94.421	9	7	Median	1.1826	0.96475	102.29	2	2	Median	0.46382	0.55273	165.33	2	1	Median	0.61675	0.60557	62.857	2	1	Median	0.44647	0.47494	113.31	3	3	Median	4815700000	2413200000	2402500000	1227800000	498740000	729050000	919040000	499910000	419130000	790710000	355600000	435110000	1878100000	1058900000	819200000	11804	2078;2753;2133	11182	72523;72524;72525;72526;72527;72528;72529;72530;72531;72532	98073;98074;98075;98076;98077;98078;98079;98080;98081;98082;98083;98084	98073			12	
EIASTLMESEMMEILSVLAK	1	Unmodified	2224.1041	0.10407901	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	2	2	3	1	103.54	100.46	2;3	1.4507E-82	91844	160511_QHF_FH_JSI11i_2	290.65	261.35			0.96816	1.0958	16.781	8	3	Median	1.5052	1.3083	8.7534	2	1	Median	0.88982	1.0755	1.6046	2	1	Median	1.0282	0.85399	15.052	3	1	Plateau	1.0152	1.1194	NaN	1	0	Median	286950000	140720000	146230000	67506000	22490000	45016000	112660000	66333000	46322000	103530000	50493000	53033000	3265700	1409200	1856500	11805	4704	11183	72533;72534;72535;72536;72537;72538;72539;72540	98085;98086;98087;98088;98089;98090;98091;98092;98093;98094;98095;98096	98088			12	
EIATVVK	1	Unmodified	758.4538	0.45380487	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.64	6	3				2	2			4	3	1	5	24.031	20.064	2	0.0072914	18911	160511_QHF_FH_JSI11i_1	89.369	22.376			1.7221	1.3835	78.621	13	11	Median	1.8515	1.5327	78.531	4	3	Median	1.3034	1.5963	94.368	3	3	Plateau	2.8165	2.7452	NaN	1	1	Median	0.75519	0.81141	85.523	5	4	Median	4383300000	2087800000	2295500000	1229900000	639210000	590690000	816950000	395010000	421940000	755360000	285790000	469570000	1581100000	767830000	813300000	11806	773	11184	72541;72542;72543;72544;72545;72546;72547;72548;72549;72550;72551;72552;72553	98097;98098;98099;98100;98101;98102;98103;98104;98105;98106;98107;98108;98109	98097			13	
EIATVVKK	2	Acetyl (K)	928.55933	0.55933258	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		38.856	29.268	2	0.0011213	17783	160513_QHF_FH_JSI11Kac_4	94.302	9.2384			0.0098241	0.0095924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0098241	0.0095924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5574000	5446300	127710	0	0	0	0	0	0	5574000	5446300	127710	0	0	0	11807	773	11185	72554	98110	98110	383		1	
EIAVGDSEGQIVIYDVGEQIAVPR	0	Unmodified	2556.3071	0.30714722	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	100.94	100.82	3	1.2342E-16	91513	160511_QHF_FH_JSI10i_1	123.14	119.55			0.54286	0.64247	16.864	3	1	Plateau	1.0399	0.86242	NaN	1	0	Median	0.54286	0.62944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7949	0.81802	NaN	1	1	Median	248560000	137880000	110680000	44358000	17400000	26957000	102100000	58098000	44005000	0	0	0	102100000	62386000	39716000	11808	2400	11186	72555;72556;72557	98111;98112;98113	98112			3	
EIAVTVK	1	Unmodified	758.4538	0.45380487	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.35	4	6	1			1	3			4	4	3	4	28.135	24.438	2	0.007384	15794	160513_QHF_FH_JSI12Kac_4	89.55	8.2531			1.2737	1.12	49.304	15	6	Median	1.2503	1.0078	45.66	4	1	Median	1.1205	1.3338	54.979	4	2	Median	1.4483	1.4093	43.162	3	1	Median	1.1557	1.2398	69.666	4	2	Median	2508800000	1234500000	1274300000	445510000	192860000	252640000	806030000	412580000	393450000	549050000	267900000	281150000	708240000	361210000	347030000	11809	4321	11187	72558;72559;72560;72561;72562;72563;72564;72565;72566;72567;72568;72569;72570;72571;72572	98114;98115;98116;98117;98118;98119;98120;98121;98122;98123;98124;98125;98126;98127;98128;98129;98130;98131;98132	98129			19	
EIAVTVKK	2	Unmodified	886.54877	0.54876789	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	18.516	18.542	2	0.0054441	14967	160511_QHF_FH_JSI12i_3	83.206	17.954			1.4903	1.5625	60.118	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4903	1.5625	60.118	2	2	Median	87439000	37141000	50298000	0	0	0	0	0	0	0	0	0	87439000	37141000	50298000	11810	4321	11188	72573;72574	98133;98134	98133			2	
EICLLKELK	2	Acetyl (K)	1186.6631	0.66314572	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			3	1	1	81.878	71.381	2	0.00015088	35515	160513_QHF_FH_JSI10Kac_5	112.75	73.444			0.73084	0.71511	102.9	3	1	Median	NaN	NaN	NaN	0	0	Median	0.30745	0.36292	134.57	2	1	Median	0.73084	0.71511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24634000	12425000	12209000	0	0	0	9102200	4984500	4117700	13354000	7440700	5912900	2178200	0	2178200	11811	2151	11189	72575;72576;72577;72578;72579	98135;98136;98137;98138;98139;98140	98139	2256		6	
EIDAEGK	1	Unmodified	760.3603	0.36029842	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	8.1277	7.765	2	0.015056	5589	160511_QHF_FH_JSI12i_1	65.252	40.254			0.83093	0.82227	40.557	5	1	Median	0.46053	0.39175	NaN	1	0	Median	0.46681	0.55407	NaN	1	1	Median	0.83093	0.82227	NaN	1	0	Median	0.92195	0.9903	0.7163	2	0	Median	1725200000	938740000	786490000	143650000	96504000	47146000	413210000	263900000	149310000	436110000	219850000	216260000	732270000	358490000	373780000	11812	611	11190	72580;72581;72582;72583;72584	98141;98142;98143	98142			3	
EIDAYIVQAK	1	Unmodified	1148.6077	0.60773933	4745	Q9H6H4	REEP4	Receptor expression-enhancing protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.782	51.116	2	0.0039129	46300	160511_QHF_FH_JSI12i_1	67.838	53.842			0.89462	0.91491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89462	0.91491	NaN	1	1	Median	69519000	44310000	25209000	0	0	0	0	0	0	0	0	0	69519000	44310000	25209000	11813	4745	11191	72585	98144	98144			1	
EIDCLSPEAQK	1	Unmodified	1288.5969	0.59691665	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.871	32.531	2	0.0038174	29063	160511_QHF_FH_JSI10i_1	67.113	38.714			0.43234	0.47838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43234	0.47838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19446000	14592000	4854500	0	0	0	19446000	14592000	4854500	0	0	0	0	0	0	11814	2804	11192	72586	98145;98146	98146			2	
EIDDEANSYFQR	0	Unmodified	1485.6372	0.63720156	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	45.881	45.201	2	2.5815E-06	40851	160511_QHF_FH_JSI11i_1	121.36	105.73			1.0799	1.0422	10.281	7	7	Median	1.3703	1.1338	9.2863	2	2	Median	0.81312	0.9615	6.2187	2	2	Median	1.1139	1.0779	4.7635	2	2	Median	0.8634	0.90529	NaN	1	1	Median	546550000	266220000	280320000	126970000	49667000	77305000	161310000	86039000	75274000	154240000	73822000	80414000	104030000	56697000	47330000	11815	21	11193	72587;72588;72589;72590;72591;72592;72593	98147;98148;98149;98150;98151;98152;98153	98148			7	
EIDDSVLGQTGPYR	0	Unmodified	1548.742	0.74200098	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	56.192	55.456	2	5.4576E-30	50432	160511_QHF_FH_JSI12i_1	191.53	138.74			0.97007	0.99715	3.8236	3	0	Plateau	1.1729	0.97775	NaN	1	0	Median	0.77569	0.92618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97007	0.99715	NaN	1	0	Median	462950000	250230000	212720000	149100000	74465000	74635000	124690000	77623000	47070000	0	0	0	189150000	98138000	91014000	11816	346	11194	72594;72595;72596	98154;98155;98156;98157	98154			3	
EIDELIK	1	Unmodified	858.46985	0.46984887	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	43.847	43.272	2	0.011216	38366	160511_QHF_FH_JSI9i_1	62.659	4.4912			0.71659	0.67064	78.516	6	6	Median	0.53184	0.44116	NaN	1	1	Median	0.60042	0.7071	124.05	2	2	Median	0.51726	0.5107	103.48	2	2	Median	0.9655	1.0195	NaN	1	1	Median	1255300000	734630000	520680000	161040000	90890000	70150000	456500000	271850000	184650000	423620000	253970000	169650000	214140000	117910000	96223000	11817	5569	11195	72597;72598;72599;72600;72601;72602;72603	98158;98159;98160;98161;98162;98163;98164	98164			7	
EIDELIPK	1	Unmodified	955.52261	0.52261272	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		54.237	53.832	2	0.02783	48706	160511_QHF_FH_JSI11i_1	51.059	12.097			0.11548	0.12282	73.173	2	2	Median	NaN	NaN	NaN	0	0	Median	0.17743	0.20605	NaN	1	1	Median	0.075162	0.073207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	991680000	956040000	35637000	0	0	0	149980000	134090000	15889000	841700000	821950000	19748000	0	0	0	11818	489	11196	72604;72605	98165;98166	98165			2	
EIDGGLETLR	0	Unmodified	1101.5666	0.5666028	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.17	4	1	2				2			2	3	1	3	46.181	43.045	2;3	8.5351E-19	41301	160511_QHF_FH_JSI12i_1	171.56	112.58			0.96138	0.99947	12.996	9	0	Median	1.2275	0.99644	24.041	2	0	Median	0.82209	0.99433	9.8617	3	0	Median	1.0275	0.99947	NaN	1	0	Median	0.96138	1.04	16.463	3	0	Median	3812400000	1713800000	2098600000	1404200000	412830000	991400000	1177600000	619430000	558220000	686280000	358170000	328110000	544220000	323350000	220870000	11819	1473	11197	72606;72607;72608;72609;72610;72611;72612;72613;72614	98167;98168;98169;98170;98171;98172;98173;98174;98175;98176;98177;98178;98179	98172			12	
EIDLVNRDPK	1	Unmodified	1197.6354	0.63535107	2202	Q03135	CAV1	Caveolin-1	no	no	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	30.811	30.038	3	0.0037041	25304	160511_QHF_FH_JSI12i_3	42.743	31.531			1.1618	1.2623	30.408	3	0	Median	NaN	NaN	NaN	0	0	Median	0.61212	0.75403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.182	1.2764	1.5674	2	0	Median	1055600000	613730000	441880000	0	0	0	345770000	222790000	122980000	0	0	0	709830000	390940000	318890000	11820	2202	11198	72615;72616;72617	98180;98181;98182;98183	98183			4	
EIDMLLK	1	Unmodified	860.46774	0.46774038	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								1	3	2	4	59.164	58.408	2	0.0063825	52997	160511_QHF_FH_JSI10i_1	91.906	40.94			1.4976	1.581	108.57	10	9	Median	2.4089	2.0662	NaN	1	1	Median	0.99616	1.2097	139.09	3	2	Median	1.1506	1.1581	134.23	2	2	Median	0.9437	1.0122	124.01	4	4	Median	1296400000	674390000	621970000	96573000	41080000	55493000	403880000	220050000	183830000	256320000	127720000	128600000	539600000	285550000	254050000	11821	2846	11199	72618;72619;72620;72621;72622;72623;72624;72625;72626;72627	98184;98185;98186;98187;98188;98189;98190;98191;98192;98193;98194	98190			11	
EIDPTSIPTAIK	1	Unmodified	1283.6973	0.69728262	4131	Q96IZ7	RSRC1	Serine/Arginine-related protein 53	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	64.29	63.604	2	0.0097377	56410	160511_QHF_FH_JSI9i_1	57.785	29.576			1.184	1.2671	14.462	3	1	Plateau	1.184	0.97164	NaN	1	1	Median	1.0279	1.1961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2365	1.2832	NaN	1	0	Median	220920000	97365000	123560000	72037000	32932000	39104000	69186000	30344000	38842000	0	0	0	79700000	34088000	45612000	11822	4131	11200	72628;72629;72630	98195;98196;98197	98197			3	
EIDTDSTSQGESK	1	Unmodified	1395.6001	0.60014735	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	12.043	9.355	2	5.6515E-22	8249	160511_QHF_FH_JSI9i_1	171.62	123.33			0.97272	1.006	33.01	6	1	Median	0.93094	0.75369	NaN	1	0	Median	0.93121	1.1115	NaN	1	0	Median	1.0559	1.0103	9.9649	2	0	Median	0.66609	0.71489	57.664	2	1	Median	648250000	346490000	301760000	180920000	107040000	73884000	184810000	115380000	69435000	140180000	64412000	75769000	142330000	59665000	82669000	11823	1685	11201	72631;72632;72633;72634;72635;72636;72637	98198;98199;98200;98201;98202;98203;98204;98205;98206;98207	98206			10	
EIDVEVRK	1	Unmodified	986.53966	0.53965977	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							1	1	3	3	23.681	23.267	2;3	6.476E-05	19328	160511_QHF_FH_JSI12i_3	114.89	64.288			1.1443	1.0847	31.31	8	1	Median	1.2538	1.0891	NaN	1	0	Median	0.95724	1.1541	NaN	1	0	Median	1.1528	1.0804	50.415	3	1	Median	1.1894	1.0006	11.973	3	0	Plateau	879160000	441470000	437690000	78009000	37027000	40982000	63081000	39743000	23338000	241450000	98692000	142760000	496620000	266010000	230610000	11824	903	11202	72638;72639;72640;72641;72642;72643;72644;72645	98208;98209;98210;98211;98212;98213;98214;98215;98216;98217	98214			10	
EIDVISIPSK	1	Unmodified	1099.6125	0.61249036	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	62.934	62.297	2	0.0023303	56454	160511_QHF_FH_JSI11i_1	60.518	31.045			0.97861	0.87945	24.913	5	3	Median	0.97861	0.81838	NaN	1	0	Median	0.49872	0.59211	NaN	1	1	Median	0.99337	0.97101	NaN	1	0	Median	0.97623	1.0116	19.792	2	2	Median	352320000	177970000	174350000	63540000	31154000	32386000	74454000	44915000	29539000	85970000	39547000	46423000	128360000	62352000	66004000	11825	4300	11203	72646;72647;72648;72649;72650	98218;98219;98220;98221;98222;98223;98224	98218			7	
EIEDAEK	1	Unmodified	832.38143	0.38142779	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	8.047	7.6955	2	0.0053146	5535	160511_QHF_FH_JSI12i_1	111.01	69.505			0.68833	0.66419	59.551	5	5	Median	1.2574	1.0455	NaN	1	1	Median	0.52751	0.63668	NaN	1	1	Median	0.68833	0.66419	NaN	1	1	Median	0.68108	0.71211	112.33	2	2	Median	2115400000	1499300000	616070000	327850000	206060000	121790000	614010000	507770000	106240000	560870000	423810000	137060000	612680000	361700000	250980000	11826	389	11204	72651;72652;72653;72654;72655	98225;98226;98227;98228;98229	98226			5	
EIEDFDSLEALR	0	Unmodified	1435.6831	0.68308912	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			49.263	48.843	2	0.016449	43964	160511_QHF_FH_JSI10i_1	50.473	15.295			0.44586	0.52929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44586	0.52929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43200000	25177000	18022000	0	0	0	43200000	25177000	18022000	0	0	0	0	0	0	11827	1578	11205	72656	98230	98230			1	
EIEDFDSLEALRLEGNTVGVEAAR	0	Unmodified	2632.298	0.2980391	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	90.894	90.51	3	3.53E-06	80149	160511_QHF_FH_JSI10i_2	64.87	39.849			1.224	1.4287	21.128	5	3	Median	1.9374	1.6693	NaN	1	1	Median	1.1717	1.4287	NaN	1	0	Median	1.3405	1.361	15.853	2	2	Median	0.97304	0.97588	NaN	1	0	Median	202340000	91115000	111220000	19828000	5737600	14091000	35439000	18282000	17157000	68580000	27201000	41379000	78491000	39895000	38596000	11828	1578	11206	72657;72658;72659;72660;72661;72662	98231;98232;98233;98234;98235;98236;98237;98238;98239	98236			9	
EIEDPEDR	0	Unmodified	1001.4302	0.4301689	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	15.66	13.893	2	0.0037119	11871	160511_QHF_FH_JSI10i_1	70.919	60.505			1.0042	0.95344	9.0854	5	1	Median	1.0042	0.83777	NaN	1	0	Median	0.808	0.95344	NaN	1	0	Median	1.0253	1.0148	NaN	1	1	Median	0.9403	1.0046	8.5015	2	0	Median	644350000	325880000	318470000	148570000	73356000	75210000	144880000	76657000	68220000	198890000	102080000	96811000	152010000	73789000	78226000	11829	1299	11207	72663;72664;72665;72666;72667	98240;98241;98242;98243;98244	98241			5	
EIEEAMK	1	Unmodified	848.39497	0.39496937	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		15.908	15.704	2	0.0044769	13072	160511_QHF_FH_JSI11i_1	98.418	33.615			1.6554	1.6247	80.169	3	2	Median	NaN	NaN	NaN	0	0	Median	0.92497	1.0908	108.61	2	2	Median	1.6554	1.6247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	676970000	299450000	377530000	0	0	0	472130000	218970000	253150000	204850000	80475000	124370000	0	0	0	11830	2230	11208	72668;72669;72670	98245;98246;98247;98248	98245			4	
EIEELKQELIQAEIQNGVK	2	Unmodified	2210.1794	0.17942751	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	80.636	80.395	3	0.0041568	69829	160511_QHF_FH_JSI12i_3	44.587	28.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11831	2323	11209	72671	98249	98249			1	
EIEELQSQAQALSQEGK	1	Unmodified	1886.9222	0.92215019	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	1	3	58.071	57.413	2;3	1.5454E-73	51929	160511_QHF_FH_JSI10i_1	203.85	180.94			1.7597	1.849	191.11	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7597	1.849	191.11	2	2	Median	60958000	20387000	40571000	0	0	0	0	0	0	0	0	0	60958000	20387000	40571000	11832	2162	11210	72672;72673;72674;72675;72676	98250;98251;98252;98253;98254	98254			5	
EIEEREK	1	Unmodified	931.46108	0.4610751	1565;4119	P43487;Q96I25	RANBP1;RBM17	Ran-specific GTPase-activating protein;Splicing factor 45	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	5.175	5.0082	2;3	0.0042966	2808	160511_QHF_FH_JSI12i_3	71.342	14.062			0.93161	0.97661	11.869	6	1	Median	1.2914	1.0716	NaN	1	0	Median	0.84379	1.0356	NaN	1	0	Median	0.94676	0.97373	2.4311	2	1	Median	0.83698	0.85816	16.272	2	0	Median	3369600000	1661100000	1708500000	628580000	288430000	340150000	824800000	440310000	384480000	1040000000	462460000	577540000	876210000	469910000	406310000	11833	1565;4119	11211	72677;72678;72679;72680;72681;72682;72683	98255;98256;98257;98258;98259;98260;98261	98261			7	
EIEESKEPGVEDTEWSNTQTEEAIQTR	1	Unmodified	3134.4164	0.41637591	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.623	56.133	3	7.9234E-32	50988	160511_QHF_FH_JSI12i_1	150.94	138.16			0.97442	1.0389	9.5061	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97442	1.1711	NaN	1	0	Median	1.0671	1.0389	NaN	1	0	Median	0.94388	0.97064	NaN	1	0	Median	174130000	84865000	89261000	0	0	0	67238000	31979000	35259000	52552000	26798000	25754000	54336000	26088000	28249000	11834	4334	11212	72684;72685;72686	98262;98263;98264;98265;98266;98267;98268	98266			7	
EIEEYIHKPK	2	Unmodified	1284.6714	0.67140222	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	28.108	28.078	2;3	0.00022463	23560	160511_QHF_FH_JSI12i_3	113.62	92.922			0.33344	0.32889	39.648	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38347	0.35942	NaN	1	1	Median	0.24121	0.23906	45.116	2	2	Median	369420000	249500000	119920000	0	0	0	0	0	0	119180000	79550000	39633000	250240000	169950000	80290000	11835	1532	11213	72687;72688;72689	98269;98270;98271	98271			3	
EIEGEEIEIVLAKPPDK	2	Unmodified	1908.0092	0.0091742879	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	74.823	74.47	3	1.2618E-06	67753	160511_QHF_FH_JSI11i_1	103.5	86.012			0.74444	0.87327	5.2054	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74444	0.87327	NaN	1	0	Median	0.96651	0.94505	NaN	1	0	Median	0.80653	0.85664	NaN	1	0	Median	145360000	78441000	66916000	0	0	0	58203000	32425000	25778000	42155000	19489000	22666000	45000000	26528000	18473000	11836	326	11214	72690;72691;72692	98272;98273;98274;98275;98276;98277	98273			6	
EIEGEEIEIVLAKPPDKK	3	Unmodified	2036.1041	0.10413731	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		66.413	66.413	4	0.0014348	59156	160511_QHF_FH_JSI11i_3	54.805	51.365			1.1896	1.0888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1896	1.0888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27982000	9696200	18285000	0	0	0	0	0	0	27982000	9696200	18285000	0	0	0	11837	326	11215	72693	98278	98278			1	
EIEHLSR	0	Unmodified	882.45593	0.45593014	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	10.66	10.224	2	0.011676	8136	160511_QHF_FH_JSI10i_2	76.774	37.956			0.71677	0.71761	20.726	5	3	Median	0.83859	0.71761	NaN	1	0	Median	0.60593	0.73943	NaN	1	1	Median	0.78737	0.78609	13.239	2	2	Median	0.45573	0.49216	NaN	1	0	Median	255390000	140520000	114870000	29920000	15509000	14412000	58242000	32228000	26013000	123950000	64794000	59158000	43271000	27986000	15285000	11838	679	11216	72694;72695;72696;72697;72698	98279;98280;98281;98282;98283	98283			5	
EIEHNLSK	1	Unmodified	968.49271	0.49270958	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	10.222	9.7454	2	0.0016392	7517	160511_QHF_FH_JSI9i_2	86.794	46.526			0.81955	0.90678	47.863	4	1	Median	0.66986	0.57912	NaN	1	0	Median	1.0027	1.2114	NaN	1	1	Median	1.5972	1.5993	NaN	1	0	Median	0.61637	0.67875	NaN	1	0	Median	279490000	143430000	136060000	58555000	28141000	30414000	73536000	37818000	35719000	67834000	28423000	39410000	79566000	49045000	30520000	11839	3896	11217	72699;72700;72701;72702	98284;98285;98286	98284			3	
EIEIAEQDMSALISLRK	1	Unmodified	1945.019	0.019027468	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		90.087	90.087	3	6.9811E-06	80247	160511_QHF_FH_JSI11i_3	92.307	70.773			1.152	1.0855	157.16	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.152	1.0855	157.16	2	2	Median	NaN	NaN	NaN	0	0	Median	82913000	36507000	46406000	0	0	0	0	0	0	82913000	36507000	46406000	0	0	0	11840	389	11218	72703;72704	98287;98288	98287			2	
EIEIDIEPTDK	1	Unmodified	1300.6398	0.63982732	2718	Q15843	NEDD8	NEDD8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.815	59.169	2	6.0691E-10	53396	160511_QHF_FH_JSI10i_1	158.79	125.53			0.80207	0.86841	26.014	4	1	Median	0.70699	0.57837	NaN	1	1	Median	0.73674	0.86571	NaN	1	0	Median	0.87319	0.87112	NaN	1	0	Median	1.0159	1.0782	NaN	1	0	Median	661720000	358360000	303360000	69893000	39226000	30667000	253470000	151030000	102440000	131160000	71508000	59649000	207200000	96594000	110600000	11841	2718	11219	72705;72706;72707;72708	98289;98290;98291;98292	98291			3	
EIEIGVPNAQDRLDILQK	1	Unmodified	2050.1059	0.10586864	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		80.019	80.019	3	0.00040145	71491	160511_QHF_FH_JSI11i_3	56.121	36.829			1.0533	1.0063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0533	1.0063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30658000	13251000	17406000	0	0	0	0	0	0	30658000	13251000	17406000	0	0	0	11842	3586	11220	72709	98293	98293			1	
EIELENDLK	1	Unmodified	1101.5554	0.55536941	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.878	48.463	2	0.01132	43812	160511_QHF_FH_JSI11i_1	58.433	24.345			0.83941	0.81697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83941	0.81697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90093000	45695000	44398000	0	0	0	0	0	0	90093000	45695000	44398000	0	0	0	11843	2712	11221	72710	98294	98294			1	
EIELIGSGGFGQVFK	1	Unmodified	1579.8246	0.8246084	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	94.343	93.856	2;3	0.0031315	82307	160511_QHF_FH_JSI11i_2	64.64	32.632			0.99563	1.0687	15.091	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0792	1.0758	21.336	2	2	Median	0.99563	1.0687	NaN	1	0	Median	58574000	29908000	28666000	0	0	0	0	0	0	32645000	15351000	17295000	25929000	14557000	11372000	11844	1162	11222	72711;72712;72713	98295;98296;98297	98296			3	
EIEMASEERPPAQALEIMMGLK	1	Unmodified	2472.2063	0.20625267	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	100.92	100.86	3	8.8619E-29	87458	160511_QHF_FH_JSI12i_3	173.77	142.31			0.97626	0.95909	40.615	6	2	Median	1.1051	0.93304	NaN	1	0	Median	0.77185	0.9727	NaN	1	1	Median	1.0289	0.9714	57.573	3	1	Median	0.92632	0.94692	NaN	1	0	Median	844650000	446810000	397830000	72028000	34205000	37823000	95985000	68343000	27642000	378950000	180150000	198800000	297680000	164110000	133570000	11845	1298	11223	72714;72715;72716;72717;72718;72719	98298;98299;98300;98301;98302;98303;98304	98303			7	
EIEMHSINDK	1	Unmodified	1214.5601	0.56013721	2240	Q06136	KDSR	3-ketodihydrosphingosine reductase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.864	23.519	2	0.00033911	19593	160511_QHF_FH_JSI11i_2	87.258	38.462			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11846	2240	11224	72720	98305	98305			1	
EIEMSVDDDDINSSK	1	Unmodified	1695.7145	0.71452518	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	48.471	47.967	2	5.4434E-05	43142	160511_QHF_FH_JSI10i_1	116.24	83.013			1.0722	2.4094	46.066	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4327	1.6531	53.987	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0722	1.0576	NaN	1	1	Median	63520000	22916000	40604000	0	0	0	51360000	15202000	36158000	0	0	0	12160000	7713500	4446100	11847	4929	11225	72721;72722;72723	98306;98307;98308	98307			3	
EIEMYQGAAQYENPPHIYALADNMYR	0	Unmodified	3086.3902	0.3902417	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	87.082	86.446	3	1.0296E-32	76004	160511_QHF_FH_JSI11i_2	154.71	152.35			1.0352	1.139	7.2078	4	0	Median	1.3385	1.1746	NaN	1	0	Median	0.94564	1.1409	NaN	1	0	Median	1.0082	0.99922	NaN	1	0	Median	1.063	1.1371	NaN	1	0	Median	223570000	106020000	117540000	32320000	11522000	20798000	55944000	28879000	27065000	94748000	46881000	47867000	40555000	18742000	21813000	11848	2332	11226	72724;72725;72726;72727;72728	98309;98310;98311;98312;98313;98314;98315;98316;98317;98318	98316			10	
EIENGHIFTVNDQFTSK	1	Unmodified	1977.9432	0.94321999	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							1		3	2	58.913	58.399	3	4.9303E-05	50271	160511_QHF_FH_JSI12i_3	70.942	60.885			0.99126	1.0719	13.024	6	2	Median	0.9623	0.84603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0342	1.0812	14.703	3	2	Median	0.99126	1.0726	1.3213	2	0	Median	339650000	149070000	190580000	45937000	21966000	23971000	0	0	0	165910000	66584000	99322000	127800000	60519000	67282000	11849	2455	11227	72729;72730;72731;72732;72733;72734	98319;98320;98321;98322;98323	98322			5	
EIEPFLPPLKPDYCVK	2	Unmodified	1944.0067	0.0066718674	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		84.63	84.036	3	0.030579	73848	160511_QHF_FH_JSI11i_2	36.345	22.09			0.51202	0.51559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51202	0.51559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24330000	15254000	9076100	0	0	0	0	0	0	24330000	15254000	9076100	0	0	0	11850	3489	11228	72735	98324	98324			1	
EIEQEAAVELSQLRDPQHDLDR	0	Unmodified	2590.2623	0.2623223	1611	P47985	UQCRFS1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	3	2	2	70.941	70.319	3;4	2.7089E-10	62686	160511_QHF_FH_JSI11i_3	112.88	106.08			1.0755	1.1183	23.572	8	6	Median	1.3689	1.1998	7.4315	2	2	Median	0.85097	1.0429	18.04	3	2	Median	1.4738	1.4417	38.432	2	2	Median	0.95707	0.96329	NaN	1	0	Median	843950000	360270000	483680000	133590000	51755000	81837000	214520000	108690000	105830000	332970000	126530000	206440000	162870000	73297000	89568000	11851	1611	11229	72736;72737;72738;72739;72740;72741;72742;72743;72744	98325;98326;98327;98328;98329;98330;98331;98332;98333;98334;98335	98325			11	
EIERPFETYK	1	Unmodified	1310.6507	0.65066678	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.532	35.404	3	0.0037469	30050	160511_QHF_FH_JSI12i_3	56.359	33.133			1.3645	1.4015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3645	1.4015	NaN	1	1	Median	142980000	58321000	84659000	0	0	0	0	0	0	0	0	0	142980000	58321000	84659000	11852	1576	11230	72745	98336	98336			1	
EIESEIDSEEELINK	1	Unmodified	1775.8313	0.8312695	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	64.826	64.212	2;3	4.2024E-98	58426	160511_QHF_FH_JSI12i_1	308.25	241.63			0.99531	0.89172	9.5952	8	0	Median	1.0911	0.89172	1.2837	2	0	Median	0.71273	0.83859	1.7706	2	0	Median	0.95209	0.92063	10.62	2	0	Median	1.0115	1.0389	6.3611	2	0	Median	1021100000	473000000	548120000	176800000	77779000	99021000	282920000	157700000	125220000	293430000	151740000	141690000	267980000	85789000	182190000	11853	2545	11231	72746;72747;72748;72749;72750;72751;72752;72753	98337;98338;98339;98340;98341;98342;98343;98344;98345;98346;98347;98348;98349;98350;98351;98352	98343			15	
EIESEIDSEEELINKK	2	Unmodified	1903.9262	0.92623252	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.644	58.998	3	1.0891E-10	53594	160511_QHF_FH_JSI12i_1	124.25	95.238			1.0213	0.96314	20.457	4	0	Median	0.94371	0.76597	NaN	1	0	Median	0.72343	0.84112	NaN	1	0	Median	1.1275	1.1029	NaN	1	0	Median	1.1053	1.1666	NaN	1	0	Median	417810000	195080000	222730000	82243000	28741000	53502000	97878000	57520000	40358000	95652000	42006000	53646000	142040000	66811000	75227000	11854	2545	11232	72754;72755;72756;72757	98353;98354;98355;98356;98357;98358;98359;98360	98355			8	
EIESSPQYR	0	Unmodified	1107.5197	0.51965261	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.25	0.433	3	1									2		2	16.785	16.316	2	0.00020435	13942	160511_QHF_FH_JSI12i_1	102	67.829			0.86553	0.9434	19.444	4	4	Median	NaN	NaN	NaN	0	0	Median	0.70809	0.82704	9.1229	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0856	1.1103	13.545	2	2	Median	433560000	261760000	171810000	0	0	0	115750000	72808000	42946000	0	0	0	317810000	188950000	128860000	11855	3801	11233	72758;72759;72760;72761	98361;98362;98363;98364;98365	98361			5	
EIETLVEEK	1	Unmodified	1088.5601	0.56012044	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.864	40.227	2	0.0002709	36001	160511_QHF_FH_JSI10i_1	96.331	43.615			1.5645	1.7077	61.804	4	4	Median	0.79694	0.6719	NaN	1	1	Median	1.0767	1.2695	NaN	1	1	Median	2.6068	2.5735	NaN	1	1	Median	2.2734	2.2972	NaN	1	1	Median	440400000	198500000	241900000	66267000	34395000	31871000	123090000	62794000	60296000	136310000	61750000	74555000	114730000	39559000	75174000	11856	2806	11234	72762;72763;72764;72765	98366;98367;98368;98369	98368			4	
EIETTGQIMHR	0	Unmodified	1313.6398	0.63978452	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.811	26.774	2	0.010266	22334	160511_QHF_FH_JSI12i_3	55.567	37.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11857	3063	11235	72766	98370	98370			1	
EIETYHNLLEGGQEDFESSGAGK	1	Unmodified	2509.1245	0.12449141	62	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	0	By MS/MS				2	0		1								1				66.012	65.102	3	2.5502E-06	57290	160511_QHF_FH_JSI9i_2	63.726	60.761		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13405000	13405000	0	13405000	13405000	0	0	0	0	0	0	0	0	0	0	11858	62	11236	72767	98371;98372	98372			2	
EIEVGGGR	0	Unmodified	815.41373	0.41373097	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.964	13.174	2	0.045987	10441	160511_QHF_FH_JSI12i_2	38.16	2.6667			1.2684	1.4235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2684	1.4235	NaN	1	0	Median	49781000	20502000	29279000	0	0	0	0	0	0	0	0	0	49781000	20502000	29279000	11859	1979	11237	72768	98373	98373			1	
EIEVGGGRK	1	Unmodified	943.50869	0.50869399	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.31	6.46		5	9					7	8	7	10	6	6	10.967	6.4034	2;3	1.1352E-05	6500	160511_QHF_FH_JSI11i_3	111.01	35.697			1.0146	0.93105	42.408	29	13	Median	1.1733	0.99119	32.453	7	4	Median	0.78889	0.93644	60.927	10	6	Median	0.98667	0.95167	27.092	6	1	Median	0.7675	0.83281	33.628	6	2	Median	13985000000	6661900000	7322700000	2716800000	1160500000	1556300000	7914900000	3898600000	4016300000	2496300000	1167400000	1328900000	856650000	435450000	421200000	11860	1979	11238	72769;72770;72771;72772;72773;72774;72775;72776;72777;72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788;72789;72790;72791;72792;72793;72794;72795;72796;72797	98374;98375;98376;98377;98378;98379;98380;98381;98382;98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395;98396;98397;98398;98399;98400;98401;98402;98403;98404;98405;98406;98407;98408	98374			34	
EIEVLNK	1	Unmodified	843.47018	0.47018322	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			1	2	2	3	33.329	31.601	2	0.0012547	27636	160511_QHF_FH_JSI9i_1	122.79	22.871			0.79852	0.70634	71.252	8	5	Median	1.1506	0.94497	NaN	1	0	Median	0.73275	0.84934	81.704	2	2	Median	0.84049	0.81517	61.428	2	1	Median	0.3922	0.41353	109.73	3	2	Median	1859400000	993240000	866130000	314840000	123800000	191040000	664360000	373460000	290910000	328650000	177690000	150950000	551510000	318290000	233220000	11861	4992	11239	72798;72799;72800;72801;72802;72803;72804;72805	98409;98410;98411;98412;98413;98414;98415;98416;98417	98416			9	
EIEYEVVR	0	Unmodified	1035.5237	0.52367535	1372;1296	P31327;P27708	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	1	1	2	40.156	37.866	2	0.00093466	34080	160511_QHF_FH_JSI11i_1	96.253	38.694			1.0398	0.94186	12.494	6	1	Median	1.122	0.94186	2.8619	2	0	Median	0.73691	0.8769	NaN	1	0	Median	0.94309	0.90597	NaN	1	0	Median	1.0577	1.1383	10.414	2	1	Median	1710700000	894510000	816200000	347660000	177150000	170510000	422410000	243880000	178520000	593290000	290740000	302550000	347360000	182730000	164620000	11862	1372;1296	11240	72806;72807;72808;72809;72810;72811	98418;98419;98420;98421;98422;98423;98424;98425	98418			8	
EIEYVETVTSR	0	Unmodified	1324.6511	0.65106071	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.749	46.524	2	0.035302	41526	160511_QHF_FH_JSI9i_1	46.406	27.428			0.8919	0.71563	NaN	1	1	Median	0.8919	0.71563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38981000	17871000	21110000	38981000	17871000	21110000	0	0	0	0	0	0	0	0	0	11863	5310	11241	72812	98426	98426			1	
EIFDKAR	1	Acetyl (K)	919.47633	0.47633123	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	40.09	30.284	2	0.028524	18034	160513_QHF_FH_JSI12Kac_4	71.296	17.091			0.5643	0.60736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5643	0.60736	NaN	1	0	Median	15505000	11696000	3809100	0	0	0	0	0	0	0	0	0	15505000	11696000	3809100	11864	1846	11242	72813	98427	98427			1	
EIFDLIR	0	Unmodified	904.50182	0.5018177	5584	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.335	70.45	2	0.0029535	60674	160511_QHF_FH_JSI12i_2	107.66	57.619			0.95593	0.99839	9.9146	4	0	Median	1.4001	1.2015	NaN	1	0	Median	0.78539	0.96781	NaN	1	0	Median	1.007	1.0074	NaN	1	0	Median	0.90747	0.98941	NaN	1	0	Median	175910000	89537000	86369000	29979000	13041000	16938000	40021000	22055000	17966000	67608000	34742000	32866000	38298000	19699000	18598000	11865	5584	11243	72814;72815;72816;72817	98428;98429;98430;98431;98432;98433	98428			6	
EIFDRYGEEGLK	1	Unmodified	1454.7042	0.70415892	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	43.68	43.381	2;3	0.00033285	38206	160511_QHF_FH_JSI11i_3	99.215	81.351			0.80293	0.78772	23.105	4	2	Median	NaN	NaN	NaN	0	0	Median	0.49272	0.61656	NaN	1	1	Median	1.0005	0.95381	4.8356	2	0	Median	0.66377	0.67318	NaN	1	1	Median	584320000	329390000	254940000	0	0	0	104210000	69431000	34777000	313480000	148650000	164840000	166630000	111310000	55323000	11866	1262	11244	72818;72819;72820;72821	98434;98435;98436;98437;98438;98439	98437			6	
EIFEQPESVVNTMR	0	Unmodified	1677.8032	0.80322103	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	67.17	66.425	2	8.4396E-30	57961	160511_QHF_FH_JSI11i_2	188.27	142.27			0.99428	0.999	8.7923	8	0	Median	1.1336	0.94147	5.6156	2	0	Median	0.79504	0.95841	17.087	2	0	Median	1.0679	1.0541	4.824	2	0	Median	0.93841	0.99872	6.5627	2	0	Median	1048900000	527410000	521470000	224000000	121630000	102370000	274950000	154510000	120450000	295290000	139070000	156230000	254630000	112210000	142420000	11867	2242	11245	72822;72823;72824;72825;72826;72827;72828;72829	98440;98441;98442;98443;98444;98445;98446;98447;98448;98449;98450	98447			9	
EIFFHYSEFK	1	Unmodified	1345.6343	0.63428844	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		4							8	3	3	3	3	69.236	63.06	2;3	8.9136E-09	33340	160513_QHF_FH_JSI9Kac_6	143.7	118.32			0.87821	0.94154	11.706	12	0	Median	1.0088	1.0584	12.637	3	0	Plateau	0.82783	0.99375	5.1732	3	0	Median	0.87536	0.83069	16.208	3	0	Median	0.88096	0.93799	9.4896	3	0	Median	2037000000	1126500000	910460000	456500000	203700000	252800000	739750000	476310000	263440000	533510000	280570000	252940000	307190000	165910000	141290000	11868	543	11246	72830;72831;72832;72833;72834;72835;72836;72837;72838;72839;72840;72841	98451;98452;98453;98454;98455;98456;98457;98458;98459;98460;98461;98462;98463;98464;98465;98466;98467;98468;98469;98470;98471;98472;98473;98474;98475;98476;98477;98478;98479	98471			29	
EIFGGNADKK	2	Unmodified	1077.5455	0.54547343	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	3	2	3	14.274	14.054	2;3	0.0021732	11173	160511_QHF_FH_JSI11i_3	78.149	48.987			0.61084	0.67802	99.933	6	6	Median	NaN	NaN	NaN	0	0	Median	0.49282	0.60238	61.37	2	2	Median	0.10864	0.10398	NaN	1	1	Median	1.3521	1.3886	61.441	3	3	Median	368920000	190770000	178150000	8383500	0	8383500	56548000	43426000	13122000	56201000	23205000	32996000	247790000	124140000	123650000	11869	5161	11247	72842;72843;72844;72845;72846;72847;72848;72849;72850	98480;98481;98482;98483;98484;98485;98486;98487;98488	98480			9	
EIFGLYGQTTGK	1	Unmodified	1312.6663	0.66631685	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	58.785	57.844	2	7.7954E-06	50124	160511_QHF_FH_JSI11i_2	120.63	78.234			0.82307	0.85334	12.628	3	0	Plateau	1.277	1.0727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82307	0.83366	NaN	1	0	Median	0.82933	0.93317	NaN	1	0	Median	318710000	180960000	137750000	61772000	26688000	35084000	0	0	0	141650000	95390000	46258000	115290000	58882000	56406000	11870	4941	11248	72851;72852;72853	98489;98490;98491;98492;98493	98492			5	
EIFITFR	0	Unmodified	924.5069	0.50690308	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	68.244	67.344	2	0.010038	57854	160511_QHF_FH_JSI12i_3	66.799	31.306			0.89288	0.97868	13.273	4	0	Median	1.3735	1.1963	NaN	1	0	Median	0.70251	0.86921	NaN	1	0	Median	0.91068	0.97041	NaN	1	0	Median	0.87542	0.98702	NaN	1	0	Median	142690000	71839000	70852000	24300000	10049000	14251000	30820000	16628000	14192000	38536000	21087000	17449000	49035000	24075000	24960000	11871	4062	11249	72854;72855;72856;72857;72858;72859	98494;98495;98496;98497;98498;98499	98499			6	
EIFLRELISNSSDALDK	1	Unmodified	1949.0106	0.010571271	880	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	1		By MS/MS			3	0			1								1			91.677	90.658	3	0.0019443	75678	160511_QHF_FH_JSI10i_3	57.525	41.032			0.11361	0.13374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11361	0.13374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15933000	14401000	1531400	0	0	0	15933000	14401000	1531400	0	0	0	0	0	0	11872	880	11250	72860	98500	98500			1	
EIFLSQPILLELEAPLK	1	Unmodified	1952.1234	0.12341618	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	102.4	102.3	2;3	2.5455E-30	90126	160511_QHF_FH_JSI11i_2	226.04	172.8			1.0126	0.91755	18.044	7	0	Median	1.0482	0.89154	NaN	1	0	Median	0.69544	0.84971	10.863	2	0	Median	0.93401	0.94319	10.771	2	0	Median	1.1104	1.2344	11.341	2	0	Median	1127500000	587590000	539860000	142450000	69824000	72623000	245960000	135040000	110920000	460080000	240110000	219970000	278960000	142610000	136350000	11873	1981;1461;1980	11251	72861;72862;72863;72864;72865;72866;72867	98501;98502;98503;98504;98505;98506;98507;98508;98509;98510;98511;98512	98510			12	
EIFMHSGLTQNLLAHIWALADTR	0	Unmodified	2636.3533	0.35332633	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	96.67	88.594	4	1.4907E-15	52477	160513_QHF_FH_JSI10Kac_6	176.48	163.42			1.1934	0.96404	14.271	3	1	Plateau	1.2036	1.0355	NaN	1	0	Median	0.80013	0.95786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1934	1.2633	NaN	1	0	Median	419640000	203830000	215810000	106200000	49170000	57035000	259820000	129300000	130520000	0	0	0	53608000	25354000	28254000	11874	5230	11252	72868;72869;72870	98513;98514	98514			2	
EIFMHSGLTQNLLAHIWALADTR	0	Oxidation (M)	2652.3482	0.34824095	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			94.923	89.203	4	0.0040292	51349	160513_QHF_FH_JSI10Kac_6	53.089	40.287			1.0628	1.224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0628	1.224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85588000	34918000	50670000	0	0	0	85588000	34918000	50670000	0	0	0	0	0	0	11875	5230	11252	72871	98515	98515		2609	1	
EIFMLSALSQEDVK	1	Unmodified	1608.8069	0.80690943	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	91.942	91.364	3	0.013058	80277	160511_QHF_FH_JSI11i_2	43.184	35.813			2.4814	2.4469	6.036	3	3	Median	NaN	NaN	NaN	0	0	Median	2.0102	2.3969	NaN	1	1	Median	2.5106	2.4469	NaN	1	1	Median	2.4814	2.6845	NaN	1	1	Median	22879000	6629700	16250000	0	0	0	7110500	1613900	5496600	7707700	2564500	5143200	8061300	2451300	5610000	11876	549	11253	72872;72873;72874	98516;98517;98518	98517			3	
EIFMVALQK	1	Unmodified	1077.5893	0.5892525	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			15	0								2		1	1			77.973	67.513	2	0.0059023	33722	160513_QHF_FH_JSI10Kac_5	63.48	38.557			0.80006	0.81465	7.259	2	1	Median	0.90183	0.77389	NaN	1	1	Median	0.70978	0.85756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3852600	2119700	1732900	1452100	836470	615580	2400600	1283300	1117300	0	0	0	0	0	0	11877	2588	11254	72875;72876	98519;98520;98521	98521			3	
EIFNFVLK	1	Unmodified	1008.5644	0.56441796	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	80.734	77.478	2	0.00024184	70205	160511_QHF_FH_JSI9i_2	126.67	85.165			0.99715	1.0031	14.856	12	0	Median	0.96207	0.80672	2.6687	3	0	Plateau	0.67289	0.82227	15.134	3	0	Plateau	0.7781	0.79111	16.421	3	0	Plateau	1.075	1.1331	0.61957	3	0	Plateau	1993000000	980100000	1013000000	357260000	160350000	196910000	480180000	246670000	233510000	647450000	319010000	328440000	508160000	254060000	254090000	11878	2094	11255	72877;72878;72879;72880;72881;72882;72883;72884;72885;72886;72887;72888	98522;98523;98524;98525;98526;98527;98528;98529;98530;98531;98532;98533;98534;98535;98536;98537;98538	98528			17	
EIGAEVR	0	Unmodified	772.40792	0.40791731	1328	P29803	PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								2	1	1	1	23.846	23.167	2	0.020219	19188	160511_QHF_FH_JSI12i_2	52.683	0			1.262	1.5634	33.543	3	0	Median	2.1498	1.8495	NaN	1	0	Median	1.262	1.5634	NaN	1	0	Median	1.0051	0.96893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	861770000	370640000	491120000	348830000	140620000	208210000	364970000	176500000	188460000	147970000	53514000	94455000	0	0	0	11879	1328	11256	72889;72890;72891;72892;72893	98539;98540;98541;98542	98539			4	
EIGALLQQLR	0	Unmodified	1139.6663	0.66625727	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		75.253	74.099	2	0.0036955	62171	160511_QHF_FH_JSI10i_3	82.452	58.422			1.3356	1.2584	138.59	5	5	Median	0.79403	0.65837	154.03	2	2	Median	0.88841	1	223.19	2	2	Median	1.3356	1.2584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146650000	66131000	80514000	34858000	13845000	21013000	53941000	30088000	23853000	57847000	22198000	35648000	0	0	0	11880	4204	11257	72894;72895;72896;72897;72898	98543;98544;98545;98546;98547	98545			5	
EIGELTQLK	1	Unmodified	1029.5706	0.57062555	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	48.887	48.033	2	0.0032129	41410	160511_QHF_FH_JSI11i_2	71.425	33.895			2.164	2.1276	86.131	8	8	Median	2.4495	2.0451	NaN	1	1	Median	2.208	2.626	24.177	2	2	Median	1.2389	1.2151	159.39	2	2	Median	2.8576	3.0405	97.871	3	3	Plateau	670420000	284650000	385760000	62857000	16925000	45933000	154540000	65097000	89439000	177750000	80885000	96867000	275270000	121750000	153520000	11881	2668	11258	72899;72900;72901;72902;72903;72904;72905;72906	98548;98549;98550;98551;98552;98553;98554;98555	98554			8	
EIGFINYYGMQR	0	Unmodified	1489.7024	0.70238478	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6.67	6.6		2							1		2		1	74.753	71.991	2	6.3079E-05	62776	160511_QHF_FH_JSI12i_2	107.21	74.206			0.94649	1.157	30.561	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.1618	1.4281	31.7	2	1	Median	NaN	NaN	NaN	0	0	Median	1.822	2.0466	NaN	1	1	Median	256860000	103920000	152930000	0	0	0	161660000	71658000	90004000	0	0	0	95193000	32265000	62928000	11882	4202	11259	72907;72908;72909	98556;98557;98558	98556			2	
EIGFINYYGMQR	0	Oxidation (M)	1505.6973	0.6972994	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS			15	0								2		1	1			73.678	63.161	2	0.0083072	31580	160513_QHF_FH_JSI10Kac_5	64.091	46.227			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	830320	0	830320	0	0	0	830320	0	830320	0	0	0	0	0	0	11883	4202	11259	72910;72911	98559;98560	98560		2410	2	
EIGFSDK	1	Unmodified	794.38103	0.38103386	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	26.807	23.35	2	0.013326	20823	160511_QHF_FH_JSI12i_1	67.981	7.2209			1.0117	1.0582	8.7612	6	0	Median	1.5548	1.2868	NaN	1	0	Median	0.89233	1.0582	1.1234	2	0	Median	1.1171	1.0962	6.5554	2	0	Median	0.95224	1.0159	NaN	1	0	Median	2686600000	1279300000	1407300000	537360000	146290000	391060000	739850000	420990000	318860000	747380000	414300000	333070000	662010000	297670000	364340000	11884	1372	11260	72912;72913;72914;72915;72916;72917	98561;98562;98563;98564;98565;98566	98562			6	
EIGFSDKQISK	2	Acetyl (K)	1292.6612	0.66123147	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		58.879	47.866	2	0.032987	27350	160513_QHF_FH_JSI11Kac_4	52.79	18.257			0.23275	0.22921	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23275	0.22921	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7821800	5951300	1870500	0	0	0	0	0	0	7821800	5951300	1870500	0	0	0	11885	1372	11261	72918	98567	98567			1	
EIGGDVQK	1	Unmodified	844.42905	0.42904669	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	12.364	9.6954	2	0.0013538	8566	160511_QHF_FH_JSI10i_1	106.04	63.042			1.27	1.3015	71.504	6	5	Median	2.4243	1.9611	NaN	1	1	Median	0.94356	1.1058	105.37	2	2	Median	2.1239	2.1027	NaN	1	1	Median	0.60565	0.65342	39.473	2	1	Median	3891800000	2078100000	1813700000	898260000	441220000	457040000	1989300000	1167200000	822150000	30651000	12736000	17915000	973620000	456970000	516650000	11886	2169	11262	72919;72920;72921;72922;72923;72924	98568;98569;98570;98571;98572;98573	98571			6	
EIGGDVQKHAEMVHTGLK	2	Acetyl (K)	1989.9942	0.9942097	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.6	0.49								2	3		2	3		53.845	43.965	3;4	1.2622E-24	23728	160513_QHF_FH_JSI11Kac_6	156.73	132.9			0.33473	0.33339	95.904	5	0	Median	NaN	NaN	NaN	0	0	Median	1.3543	1.5872	11.764	2	0	Median	0.27777	0.25988	15.319	3	0	Median	NaN	NaN	NaN	0	0	Median	281590000	214020000	67578000	0	0	0	18628000	7705800	10922000	262970000	206310000	56656000	0	0	0	11887	2169	11263	72925;72926;72927;72928;72929	98574;98575;98576;98577	98574	2286;2287		4	
EIGHGSFGAVYFAR	0	Unmodified	1509.7365	0.7364621	3237	Q7L7X3	TAOK1	Serine/threonine-protein kinase TAO1	no	no	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	80.404	79.541	3	0.0059108	47010	160511_QHF_FH_JSI9i_3	41.87	37.321			1.605	1.4998	119.34	2	1	Median	4.3778	3.4873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58846	0.64499	NaN	1	0	Median	115660000	55267000	60392000	52881000	15888000	36992000	0	0	0	0	0	0	62779000	39379000	23400000	11888	3237	11264	72930;72931	98578;98579	98579			2	
EIGILTTNK	1	Unmodified	987.56006	0.56006086	3484;5123	Q8IZP0;Q9NYB9	ABI1;ABI2	Abl interactor 1;Abl interactor 2	no	no	0	0	0	0	By MS/MS				2	0		1								1				42.293	41.244	2	0.0012377	36120	160511_QHF_FH_JSI9i_2	78.516	25.35			1.0793	0.9308	NaN	1	1	Median	1.0793	0.9308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43235000	20443000	22792000	43235000	20443000	22792000	0	0	0	0	0	0	0	0	0	11889	3484;5123	11265	72932	98580	98580			1	
EIGISNPLHR	0	Unmodified	1134.6146	0.61455605	2357	Q13136;O75145;O75334	PPFIA1;PPFIA3;PPFIA2	Liprin-alpha-1;Liprin-alpha-3;Liprin-alpha-2	yes	no	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		42.73	41.963	3	0.00035762	36892	160511_QHF_FH_JSI11i_3	58.743	49.805			0.79842	0.813	4.4937	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71384	0.78757	NaN	1	0	Median	0.89301	0.83924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76196000	46225000	29971000	0	0	0	30187000	21420000	8766500	46010000	24805000	21204000	0	0	0	11890	2357	11266	72933;72934	98581;98582;98583	98582			3	
EIGLLADEIEIYGK	1	Unmodified	1561.8239	0.8239397	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.245	94.702	2	0.040964	81419	160511_QHF_FH_JSI12i_2	46.352	22.747			0.35332	0.37568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35332	0.37568	NaN	1	1	Median	12956000	8386400	4569600	0	0	0	0	0	0	0	0	0	12956000	8386400	4569600	11891	3141	11267	72935	98584	98584			1	
EIGLLSEEVELYGETK	1	Unmodified	1807.9091	0.90912589	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	3	3	2	89.525	88.989	2;3	9.6982E-08	78390	160511_QHF_FH_JSI11i_2	133.15	115.41			0.79249	0.98005	40.116	10	10	Median	0.98489	0.84795	44.197	2	2	Median	0.72065	0.89272	26.23	3	3	Median	1.1819	1.1607	44.941	3	3	Median	0.8116	0.89314	82.254	2	2	Median	456440000	230960000	225480000	71261000	38062000	33199000	132790000	59992000	72798000	140970000	65858000	75115000	111410000	67050000	44363000	11892	1004	11268	72936;72937;72938;72939;72940;72941;72942;72943;72944;72945	98585;98586;98587;98588;98589;98590;98591;98592;98593;98594;98595;98596;98597;98598	98594			14	
EIGNIISDAMK	1	Unmodified	1189.6013	0.60127375	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.34	5	7	5				3			6	5	4	5	67.838	65.479	2	5.8188E-18	56492	160511_QHF_FH_JSI12i_2	158.79	110			0.8594	1.0291	71.661	19	13	Median	0.83421	0.68788	81.345	5	5	Median	0.67924	0.81362	54.598	5	2	Median	1.2788	1.2436	102.7	4	3	Median	1.1354	1.2509	62.977	5	3	Median	23960000000	10045000000	13915000000	5610700000	2443700000	3167100000	6269100000	2925100000	3344000000	7938400000	2878900000	5059500000	4141300000	1796900000	2344400000	11893	980	11269	72946;72947;72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958;72959;72960;72961;72962;72963;72964;72965	98599;98600;98601;98602;98603;98604;98605;98606;98607;98608;98609;98610;98611;98612;98613;98614;98615;98616;98617;98618;98619;98620;98621;98622;98623;98624;98625;98626;98627;98628;98629;98630;98631;98632;98633;98634;98635;98636;98637	98606			39	
EIGNIISDAMK	1	Oxidation (M)	1205.5962	0.59618837	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.79	8	4	5			1	5	2		7	6	5	7	51.861	48.161	2	1.5777E-05	44106	160511_QHF_FH_JSI12i_1	116.77	93.337			0.9296	0.96737	65.655	21	17	Median	0.81764	0.66989	53.784	5	5	Median	0.75536	0.87989	106.4	5	4	Median	1.1906	1.1727	43.232	5	5	Median	1.1177	1.1936	41.227	6	3	Median	1418800000	699190000	719660000	233090000	129390000	103700000	337150000	168090000	169060000	447400000	224490000	222900000	401210000	177210000	224000000	11894	980	11269	72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978;72979;72980;72981;72982;72983;72984;72985;72986;72987;72988;72989;72990	98638;98639;98640;98641;98642;98643;98644;98645;98646;98647;98648;98649;98650;98651;98652;98653;98654;98655;98656;98657;98658;98659;98660;98661;98662	98644		550	25	
EIGNIISDAMKK	2	Oxidation (M)	1333.6912	0.69115139	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							1	1	5	6	42.816	42.47	2;3	0.00060336	35955	160511_QHF_FH_JSI12i_3	69.92	41.114			0.86013	0.78482	81.111	12	12	Median	1.2505	1.0064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53865	0.50816	81.194	5	5	Median	1.0511	1.0844	93.98	6	6	Median	1777900000	849400000	928480000	31023000	11995000	19027000	7759200	7759200	0	357790000	183750000	174040000	1381300000	645890000	735420000	11895	980	11270	72991;72992;72993;72994;72995;72996;72997;72998;72999;73000;73001;73002;73003	98663;98664;98665;98666;98667;98668;98669;98670;98671;98672;98673;98674;98675	98671		550	13	
EIGNIISDAMKK	2	Unmodified	1317.6962	0.69623677	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.51	1	16	16					3		9	10	9	8	61.028	59.35	2;3	2.2052E-06	52744	160511_QHF_FH_JSI11i_3	118.37	78.449			0.87708	0.72676	125.81	36	34	Median	1.0895	0.92182	101.85	9	8	Median	0.35325	0.40922	120.56	10	9	Median	1.3094	1.2665	133.73	9	9	Median	0.86495	0.98884	163.38	8	8	Median	29087000000	13564000000	15523000000	2822400000	1599000000	1223500000	5121300000	2948000000	2173300000	9304700000	4037400000	5267300000	11839000000	4979900000	6858800000	11896	980	11270	73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015;73016;73017;73018;73019;73020;73021;73022;73023;73024;73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039	98676;98677;98678;98679;98680;98681;98682;98683;98684;98685;98686;98687;98688;98689;98690;98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701;98702;98703;98704;98705;98706;98707;98708;98709;98710;98711;98712;98713;98714;98715;98716;98717;98718;98719;98720;98721;98722;98723;98724	98678			49	
EIGNIISDAMKK	2	Acetyl (K);Oxidation (M)	1375.7017	0.70171607	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	1	1		By MS/MS		By MS/MS	14	0							2				1		1	64.379	53.673	2	0.0025604	29243	160513_QHF_FH_JSI10Kac_4	67.385	41.34			0.24986	0.28294	119.53	2	1	Median	NaN	NaN	NaN	0	0	Median	0.10304	0.12151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60586	0.65881	NaN	1	0	Median	7237700	4875200	2362500	0	0	0	2825500	2737700	87849	0	0	0	4412100	2137500	2274600	11897	980	11270	73040;73041	98725;98726	98725	755	550	2	
EIGNIISDAMKK	2	Acetyl (K)	1359.7068	0.70680145	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	77.75	67.188	2	0.042374	35813	160513_QHF_FH_JSI12Kac_4	60.434	30.624			0.92486	0.98315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92486	0.98315	NaN	1	0	Median	3082000	1665500	1416500	0	0	0	0	0	0	0	0	0	3082000	1665500	1416500	11898	980	11270	73042	98727	98727	755		1	
EIGNLLHPSVPISNDEDVDNK	1	Unmodified	2304.1234	0.1233692	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5								1	5	4	69.219	68.786	3	1.6922E-22	60041	160511_QHF_FH_JSI11i_2	158.44	142.42			0.95817	1.0011	19.896	9	3	Median	NaN	NaN	NaN	0	0	Median	0.89051	1.1122	NaN	1	0	Median	0.95817	0.97763	19.186	5	2	Median	0.97696	1.0011	23.943	3	1	Median	760240000	385210000	375030000	0	0	0	98004000	52633000	45371000	422810000	209510000	213300000	239430000	123070000	116350000	11899	1667	11271	73043;73044;73045;73046;73047;73048;73049;73050;73051;73052	98728;98729;98730;98731;98732;98733;98734;98735;98736;98737;98738;98739;98740;98741;98742;98743;98744;98745	98737			17	
EIGQSVDEVEK	1	Unmodified	1231.5932	0.59321148	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	28.211	27.829	2	0.00058696	24629	160511_QHF_FH_JSI11i_1	84.31	54.144			1.5088	1.5203	35.27	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2	1.1847	NaN	1	1	Median	1.8969	1.9509	NaN	1	1	Median	194160000	94278000	99881000	0	0	0	0	0	0	113430000	55872000	57563000	80723000	38405000	42318000	11900	2162	11272	73053;73054;73055	98746;98747;98748	98746			3	
EIGSINLK	1	Unmodified	872.49673	0.49673232	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			40.521	39.801	2	0.0025205	35499	160511_QHF_FH_JSI10i_1	79.469	18.709			0.66841	0.65868	42.836	2	0	Median	0.58077	0.48655	NaN	1	0	Median	0.76927	0.8917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	175690000	97386000	78300000	74267000	40038000	34230000	101420000	57349000	44071000	0	0	0	0	0	0	11901	5285	11273	73056;73057	98749;98750;98751	98749			3	
EIGSTMSGR	0	Unmodified	936.43348	0.43348014	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	12.847	12.304	2	0.0029264	9633	160511_QHF_FH_JSI11i_2	62.558	31.839			0.84794	0.84037	30.649	7	1	Median	1.0052	0.85783	43.254	2	0	Median	0.58653	0.70354	19.818	2	1	Median	0.84794	0.84037	NaN	1	0	Median	1.1232	1.2125	17.167	2	0	Median	498610000	265130000	233480000	146460000	65417000	81043000	133690000	75920000	57771000	101790000	58294000	43493000	116670000	65501000	51169000	11902	130	11274	73058;73059;73060;73061;73062;73063;73064	98752;98753;98754;98755;98756	98754			5	
EIGSTMSGRK	1	Unmodified	1064.5284	0.52844316	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			9.2145	8.5988	2;3	0.00019132	6436	160511_QHF_FH_JSI10i_3	74.92	31.674			0.88337	0.85948	211.15	4	3	Median	0.70656	0.5785	58.257	2	2	Median	5.1562	5.946	275.8	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	649080000	104580000	544500000	105270000	61207000	44067000	543800000	43375000	500430000	0	0	0	0	0	0	11903	130	11275	73065;73066;73067;73068	98757;98758;98759;98760	98757			4	
EIGTHKPLPGITVGDIGPK	2	Unmodified	1928.0731	0.073111949	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		59	57.979	3;4	5.754E-06	48627	160511_QHF_FH_JSI10i_3	89.049	78.195			0.96715	0.84295	33.848	6	2	Median	1.1278	0.91809	17.832	2	1	Median	0.9766	1.1197	58.834	2	1	Median	0.80697	0.75829	20.725	2	0	Median	NaN	NaN	NaN	0	0	Median	240970000	121490000	119480000	45786000	23386000	22400000	86167000	37546000	48621000	109010000	60553000	48460000	0	0	0	11904	2624	11276	73069;73070;73071;73072;73073;73074	98761;98762;98763;98764;98765;98766	98764			6	
EIGVQNVK	1	Unmodified	885.49198	0.4919813	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.135	20.866	2	0.010898	18077	160511_QHF_FH_JSI10i_1	63.306	33.465			2.0596	2.3968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0596	2.3968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104960000	45761000	59203000	0	0	0	104960000	45761000	59203000	0	0	0	0	0	0	11905	1045	11277	73075	98767	98767			1	
EIGWTDVGGWTGQGGSILGTK	1	Unmodified	2118.0382	0.038183005	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.745	5	8	5							2	5	6	5	94.367	94.148	2;3	1.3335E-33	81026	160511_QHF_FH_JSI12i_2	218.28	196.41			0.6799	0.73266	24.141	16	13	Median	0.83996	0.72877	2.9264	2	2	Median	0.64473	0.79215	15.508	5	4	Median	0.66967	0.64008	33.204	5	4	Median	0.73212	0.78021	31.818	4	3	Median	872490000	481450000	391030000	103670000	51763000	51909000	219490000	129340000	90144000	304100000	170530000	133570000	245230000	129810000	115410000	11906	2176	11278	73076;73077;73078;73079;73080;73081;73082;73083;73084;73085;73086;73087;73088;73089;73090;73091;73092;73093	98768;98769;98770;98771;98772;98773;98774;98775;98776;98777;98778;98779;98780;98781;98782;98783;98784;98785;98786;98787	98772			20	
EIHDGLDFYYSSK	1	Unmodified	1572.7096	0.70963822	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	56.83	55.91	3	0.05597	48010	160511_QHF_FH_JSI12i_2	17.917	6.9726			0.92147	0.97257	9.8859	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74841	0.90972	NaN	1	0	Median	1.1114	1.1051	NaN	1	0	Median	0.92147	0.97257	NaN	1	0	Median	92782000	48116000	44666000	0	0	0	37063000	18813000	18250000	32075000	16391000	15684000	23644000	12912000	10732000	11907	4021	11279	73094;73095;73096	98788	98788			1	
EIHKPGYLANDR	1	Unmodified	1411.7208	0.72081203	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		20.55	19.58	2;3	0.00036293	15786	160511_QHF_FH_JSI9i_3	67.234	51.37			0.84826	0.80557	29.148	4	2	Median	1.033	0.83281	2.3568	2	0	Median	0.70569	0.79232	NaN	1	1	Median	0.48483	0.45841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	518610000	246520000	272090000	261960000	112650000	149300000	196160000	97761000	98394000	60499000	36112000	24387000	0	0	0	11908	1426	11280	73097;73098;73099;73100;73101	98789;98790;98791;98792;98793;98794;98795;98796;98797;98798;98799	98796			11	
EIHKPGYLANDR	1	Acetyl (K)	1453.7314	0.73137672	1426	P35241	RDX	Radixin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.331	36.901	3	0.046266	20743	160513_QHF_FH_JSI11Kac_5	31.526	19.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11909	1426	11280	73102	98800	98800			1	
EIHTVPDMGK	1	Unmodified	1125.5488	0.54884425	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.021	25.662	3	0.046957	21423	160511_QHF_FH_JSI11i_2	30.392	24.55			1.0058	1.0196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0058	1.0196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110460000	38804000	71658000	0	0	0	0	0	0	110460000	38804000	71658000	0	0	0	11910	2645	11281	73103	98801	98801			0	
EIIAEYDTQVK	1	Unmodified	1307.6609	0.66089712	467	O75044;P0DMP2	SRGAP2;SRGAP2B	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	43.879	43.401	2	0.0020598	39491	160511_QHF_FH_JSI12i_1	73.841	5.2153			0.49731	0.58234	54.473	3	3	Median	NaN	NaN	NaN	0	0	Median	0.49731	0.58234	NaN	1	1	Median	0.29699	0.28087	NaN	1	1	Median	0.81088	0.81524	NaN	1	1	Median	93951000	60475000	33476000	0	0	0	40838000	25434000	15404000	25060000	18049000	7011600	28053000	16992000	11061000	11911	467	11282	73104;73105;73106	98802;98803;98804;98805	98804			4	
EIIDALWEFR	0	Unmodified	1290.6608	0.66083754	5841				yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.64	3				1	1					2	1	2	48.024	43.989	2	0.00037106	40121	160511_QHF_FH_JSI12i_1	89.752	39.145	+		3.9163	4.5158	15.041	5	5	Median	NaN	NaN	NaN	0	0	Median	3.8673	4.5905	2.3205	2	2	Median	3.9163	3.7614	NaN	1	1	Median	4.5035	4.9294	20.193	2	2	Median	2486700000	559970000	1926800000	0	0	0	893360000	212010000	681350000	960710000	216050000	744660000	632660000	131910000	500750000	11912	5841	11283	73107;73108;73109;73110;73111	98806;98807;98808;98809;98810;98811;98812	98808			7	
EIIDLVLDR	0	Unmodified	1084.6128	0.61282471	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.81	6.36	5	6	3				3	19		9	13	6	8	80.249	74.496	1;2	2.0623E-16	67975	160511_QHF_FH_JSI9i_2	175.91	119.9			0.838	0.94931	19.23	29	8	Median	1.2367	1.0033	18.248	5	1	Median	0.8194	0.96385	11.488	11	3	Median	0.84375	0.83889	11.402	6	1	Median	0.878	0.94931	30.136	7	3	Median	21316000000	9907200000	11409000000	2896500000	1235400000	1661000000	4579900000	2180000000	2399800000	5618300000	2622800000	2995500000	8221200000	3868900000	4352200000	11913	2073;4359	11284	73112;73113;73114;73115;73116;73117;73118;73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129;73130;73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142;73143;73144;73145;73146;73147	98813;98814;98815;98816;98817;98818;98819;98820;98821;98822;98823;98824;98825;98826;98827;98828;98829;98830;98831;98832;98833;98834;98835;98836;98837;98838;98839;98840;98841;98842;98843;98844;98845;98846;98847;98848;98849;98850;98851;98852;98853;98854;98855;98856;98857;98858;98859;98860;98861;98862;98863;98864;98865;98866;98867;98868;98869;98870;98871;98872;98873;98874;98875;98876;98877;98878;98879;98880;98881;98882;98883;98884;98885;98886;98887;98888;98889;98890;98891;98892;98893;98894	98856			81	
EIIDPVLDR	0	Unmodified	1068.5815	0.58152458	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91	4	4				2	3			2	4	2	5	58.967	54.964	2	6.2778E-08	49658	160511_QHF_FH_JSI10i_1	141.39	106.56			0.84949	0.92766	18.603	12	1	Median	1.0886	0.91319	2.261	2	0	Median	0.80645	0.96251	14.22	4	0	Median	0.79141	0.77774	10.405	2	0	Median	0.88485	0.94852	25.477	4	1	Median	3009500000	1561400000	1448100000	642220000	270840000	371380000	801140000	437490000	363650000	943610000	521930000	421680000	622540000	331140000	291390000	11914	2074	11285	73148;73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160	98895;98896;98897;98898;98899;98900;98901;98902;98903;98904;98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915;98916	98905			22	
EIIEAMLK	1	Unmodified	945.5205	0.52050423	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		57.613	57.174	2	0.0042745	51572	160511_QHF_FH_JSI10i_1	69.198	38.586			0.98577	0.94637	51.927	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0146	1.2076	NaN	1	0	Median	0.65842	0.64965	53.204	2	1	Median	NaN	NaN	NaN	0	0	Median	186780000	115130000	71653000	0	0	0	43625000	22749000	20876000	143160000	92381000	50777000	0	0	0	11915	2489	11286	73161;73162;73163	98917;98918;98919	98918			3	
EIIELLFHK	1	Unmodified	1140.6543	0.6542956	1780	P52735	VAV2	Guanine nucleotide exchange factor VAV2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									3	2	80.237	79.644	3	7.3595E-05	70754	160511_QHF_FH_JSI11i_3	92.062	84.137			0.73632	0.74259	13.017	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68587	0.67729	NaN	1	1	Median	0.79049	0.81419	NaN	1	1	Median	12445000	3659100	8785900	0	0	0	0	0	0	9861000	1776500	8084500	2584000	1882600	701410	11916	1780	11287	73164;73165;73166;73167;73168	98920;98921;98922;98923;98924	98920			5	
EIIELPLK	1	Unmodified	953.57973	0.57973367	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	70.168	69.467	2	0.0061435	59955	160511_QHF_FH_JSI12i_2	63.48	19.033			0.8718	0.88469	17.794	4	1	Median	NaN	NaN	NaN	0	0	Median	0.96001	1.0431	NaN	1	0	Median	0.76643	0.75384	6.9527	2	1	Median	0.91626	0.98845	NaN	1	0	Median	58535000	27576000	30959000	4077000	0	4077000	11243000	5089200	6153300	30568000	15562000	15006000	12648000	6924900	5722900	11917	3586	11288	73169;73170;73171;73172;73173	98925;98926;98927;98928;98929;98930;98931	98927			7	
EIIEVLQK	1	Unmodified	970.5699	0.56989727	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		51.479	51.067	2	0.020002	46237	160511_QHF_FH_JSI11i_1	56.721	9.0637			6.7595	6.6362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.7595	6.6362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95028000	10472000	84555000	0	0	0	0	0	0	95028000	10472000	84555000	0	0	0	11918	2666	11289	73174	98932	98932			1	
EIIHELEKK	2	Acetyl (K)	1179.6499	0.6499385	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		46.375	35.945	2	0.043883	20300	160513_QHF_FH_JSI11Kac_5	57.598	37.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1699400	1699400	0	0	0	0	0	0	0	1699400	1699400	0	0	0	0	11919	5310	11290	73175	98933	98933			1	
EIIIEERPGQELTDVNGVR	0	Unmodified	2166.1281	0.12806065	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	63.238	62.586	3	2.314E-08	53962	160511_QHF_FH_JSI12i_3	109.87	85.831			1.0309	1.0527	14.213	6	0	Median	1.6242	1.4187	NaN	1	0	Median	0.9562	1.1719	NaN	1	0	Median	1.0309	0.98384	2.7114	2	0	Median	0.98973	1.0527	5.2429	2	0	Median	755140000	366640000	388500000	98561000	40644000	57918000	162360000	83917000	78448000	248250000	115710000	132540000	245960000	126370000	119590000	11920	4456	11291	73176;73177;73178;73179;73180;73181	98934;98935;98936;98937;98938;98939;98940;98941;98942;98943	98943			10	
EIIINAVR	0	Unmodified	926.55492	0.5549159	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	44.39	43.255	2	0.0039248	37866	160511_QHF_FH_JSI9i_2	70.268	31.476			0.85476	0.95634	9.1849	3	1	Plateau	1.0689	0.90873	NaN	1	0	Median	0.65408	0.8061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85476	0.96556	NaN	1	0	Median	137820000	70570000	67248000	40986000	17871000	23115000	46361000	26533000	19828000	0	0	0	50471000	26166000	24305000	11921	1373	11292	73182;73183;73184	98944;98945	98944			2	
EIILQGLK	1	Unmodified	912.56442	0.56441796	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	55.397	54.643	2	0.0022334	47975	160511_QHF_FH_JSI9i_2	81.635	22.429			0.97031	1.0811	28.851	7	0	Median	1.1762	1.0013	NaN	1	0	Median	0.8923	1.0636	9.5841	2	0	Median	1.1387	1.129	19.724	2	0	Median	1.4359	1.5447	50.466	2	0	Median	426720000	230120000	196600000	60346000	30948000	29398000	122850000	75099000	47746000	125820000	67241000	58579000	117710000	56827000	60882000	11922	5523	11293	73185;73186;73187;73188;73189;73190;73191	98946;98947;98948;98949;98950;98951;98952;98953;98954;98955	98952			10	
EIILVDDASTEEHLK	1	Unmodified	1710.8676	0.86759543	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.4	0.49	3	2								1	1	1	2	59.345	58.586	3	8.0945E-05	53001	160511_QHF_FH_JSI10i_1	77.726	67.068			0.7389	0.72234	32.905	5	1	Median	1.5284	1.3685	NaN	1	1	Median	0.48628	0.56862	NaN	1	0	Median	0.7389	0.71307	NaN	1	0	Median	0.74717	0.78809	12.32	2	0	Median	162640000	85348000	77289000	46663000	16166000	30498000	27881000	18365000	9516300	28765000	14650000	14115000	59327000	36167000	23160000	11923	3620	11294	73192;73193;73194;73195;73196	98956;98957;98958	98957			2	
EIILVDDYSNDPEDGALLGK	1	Unmodified	2175.0583	0.058309325	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	1	3	88.133	87.763	2;3	1.7015E-42	79969	160511_QHF_FH_JSI12i_1	244	223.14			0.77311	0.80188	17.162	8	7	Median	0.76521	0.61537	NaN	1	1	Median	0.78109	0.9226	15.929	3	2	Median	0.94915	0.90382	NaN	1	1	Median	0.69534	0.72247	15.963	3	3	Median	511850000	298360000	213500000	19837000	11819000	8018200	226080000	129700000	96382000	51415000	26691000	24724000	214520000	130150000	84374000	11924	2294	11295	73197;73198;73199;73200;73201;73202;73203;73204;73205	98959;98960;98961;98962;98963;98964;98965;98966;98967;98968;98969;98970	98963			12	
EIINTYTEAVQTVDPFK	1	Unmodified	1966.9888	0.9887732	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	91.94	91.335	2;3	2.3614E-16	82833	160511_QHF_FH_JSI10i_1	118.37	89.602			2.3158	2.1248	3.8612	2	2	Median	2.7157	2.1836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9748	2.0675	NaN	1	1	Median	32516000	11786000	20730000	12172000	2648300	9523300	0	0	0	0	0	0	20345000	9137700	11207000	11925	4863	11296	73206;73207;73208;73209	98971;98972;98973;98974	98973			4	
EIIQDVTLHDLDVANARPQGGQDILSMMGQLMK	1	Unmodified	3635.811	0.81097231	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	95.791	87.921	3;4	4.1765E-235	49115	160513_QHF_FH_JSI11Kac_6	353.78	333.12			0.94119	0.98992	12.223	5	2	Median	1.0743	0.93622	NaN	1	0	Median	0.88314	1.0365	6.503	2	1	Median	0.87977	0.83577	NaN	1	1	Median	1.0751	1.1385	NaN	1	0	Median	1713700000	1070200000	643500000	296780000	161470000	135310000	687570000	402640000	284930000	435420000	299930000	135490000	293950000	206180000	87767000	11926	5496	11297	73210;73211;73212;73213;73214	98975;98976;98977;98978;98979;98980	98975			6	
EIISEMGELGVLGPTIK	1	Unmodified	1784.9594	0.95938732	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	95.971	95.708	3	0.00028953	82403	160511_QHF_FH_JSI12i_2	67.646	60.237			0.67539	0.68407	195.83	3	1	Median	NaN	NaN	NaN	0	0	Median	0.67539	0.73302	NaN	1	0	Median	0.7057	0.68407	NaN	1	0	Median	0.021321	0.023836	NaN	1	1	Median	270020000	256600000	13419000	0	0	0	11158000	6080400	5077600	5119500	2596700	2522800	253740000	247920000	5818600	11927	3912	11298	73215;73216;73217	98981;98982	98982			2	
EIISFGSGYGGNSLLGK	1	Unmodified	1697.8625	0.86245047	2768	Q16822;P35558	PCK2;PCK1	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial;Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	80.751	80.196	2	3.5143E-06	69622	160511_QHF_FH_JSI12i_3	107.37	104.03			0.69314	0.74232	25.54	4	2	Median	0.70561	0.59863	NaN	1	1	Median	0.68089	0.83553	NaN	1	0	Median	0.66606	0.65951	NaN	1	1	Median	1.0236	1.0591	NaN	1	0	Median	98148000	52150000	45997000	21841000	13060000	8781100	18888000	12094000	6794400	33285000	19209000	14077000	24133000	7788100	16345000	11928	2768	11299	73218;73219;73220;73221	98983;98984;98985;98986;98987	98987			5	
EIISFGSGYGGNSLLGKK	2	Unmodified	1825.9574	0.95741349	2768	Q16822;P35558	PCK2;PCK1	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial;Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			70.484	69.009	3	0.00019469	57786	160511_QHF_FH_JSI10i_3	68.41	57.355			0.94864	1.071	47.802	4	4	Median	1.2495	1.0107	78.103	2	2	Median	0.94864	1.071	26.858	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114140000	57497000	56640000	51334000	20462000	30873000	62803000	37036000	25768000	0	0	0	0	0	0	11929	2768	11300	73222;73223;73224;73225	98988;98989;98990;98991	98989			4	
EIISHISQHGGK	1	Unmodified	1304.6837	0.68369824	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	13.514	13.588	2;3	1.1883E-05	10491	160511_QHF_FH_JSI12i_3	98.902	87.689			0.89399	0.91805	1.0634	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89399	0.91805	1.0634	2	1	Median	217750000	134010000	83739000	0	0	0	0	0	0	0	0	0	217750000	134010000	83739000	11930	28	11301	73226;73227;73228;73229	98992;98993;98994;98995;98996	98995			5	
EIISHISQHGGKWPYWFK	2	Acetyl (K)	2254.1324	0.13235816	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	78.537	70.986	3;4	1.1507E-24	39267	160513_QHF_FH_JSI10Kac_6	157.12	137.3			0.98796	0.9901	27.081	4	0	Median	0.98039	0.82483	NaN	1	0	Median	0.77437	0.92743	35.076	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1891	1.2558	NaN	1	0	Median	288310000	152330000	135980000	58487000	28171000	30316000	162730000	92546000	70186000	0	0	0	67087000	31613000	35473000	11931	28	11302	73230;73231;73232;73233	98997;98998;98999;99000;99001;99002	99001	5		5	
EIISNLAK	1	Unmodified	886.51238	0.51238239	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	1	3	3	36.352	33.271	2	0.0028185	28245	160511_QHF_FH_JSI11i_2	84.498	18.425			1.1403	1.1745	38.507	8	5	Median	1.7001	1.4587	NaN	1	1	Median	1.9395	2.4039	NaN	1	1	Median	1.4051	1.4076	23.22	3	2	Plateau	0.95139	1.0278	30.027	3	1	Median	723150000	346640000	376510000	109180000	46454000	62729000	69858000	33207000	36652000	292520000	141740000	150780000	251590000	125240000	126350000	11932	542	11303	73234;73235;73236;73237;73238;73239;73240;73241	99003;99004;99005;99006;99007;99008;99009;99010	99008			8	
EIISSASVVGLK	1	Unmodified	1201.6918	0.69180331	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.72	6.08	4	4	3			1	3	3		3	6	5	4	62.92	58.361	2	5.8396E-20	32143	160513_QHF_FH_JSI11Kac_4	160.36	79.065			1.0263	0.96402	24.509	18	2	Median	1.0266	0.81167	6.4516	3	0	Plateau	0.91627	1.059	26.578	6	1	Median	1.0651	1.0494	27.441	5	0	Median	0.82673	0.88484	15.183	4	1	Median	1456500000	776100000	680360000	216760000	116980000	99782000	405840000	230000000	175840000	478700000	228080000	250620000	355170000	201050000	154120000	11933	3343	11304	73242;73243;73244;73245;73246;73247;73248;73249;73250;73251;73252;73253;73254;73255;73256;73257;73258;73259	99011;99012;99013;99014;99015;99016;99017;99018;99019;99020;99021;99022;99023;99024;99025;99026;99027;99028;99029;99030;99031;99032;99033;99034;99035	99022			24	
EIISSASVVGLKPYVENIWALLLK	2	Unmodified	2641.5095	0.50947585	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.281	90.852	3	3.5414E-42	51667	160513_QHF_FH_JSI11Kac_6	171.29	153			1.1333	1.0942	5.6426	4	0	Median	1.2902	1.0854	NaN	1	0	Median	0.90224	1.0514	NaN	1	0	Median	1.1474	1.103	NaN	1	0	Median	1.1193	1.2	NaN	1	0	Median	637650000	294890000	342770000	168250000	74527000	93726000	194440000	91370000	103070000	117280000	51280000	65996000	157690000	77711000	79975000	11934	3343	11305	73260;73261;73262;73263	99036;99037;99038;99039;99040;99041	99036			6	
EIISSEMLATSIDGMERPGNLNK	1	Unmodified	2504.2251	0.22507385	3142	Q6ULP2	AFTPH	Aftiphilin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		84.366	84.366	3	6.3062E-05	75324	160511_QHF_FH_JSI11i_3	52.541	31.341			0.90392	0.83645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90392	0.83645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14178000	4691200	9486700	0	0	0	0	0	0	14178000	4691200	9486700	0	0	0	11935	3142	11306	73264	99042	99042			1	
EIKEEPKEEEMTEEEK	3	Unmodified	2005.9038	0.90378252	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				22.541	21.559	3	0.0086811	18395	160511_QHF_FH_JSI9i_2	53.169	38.709			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12518000	0	12518000	12518000	0	12518000	0	0	0	0	0	0	0	0	0	11936	203	11307	73265	99043	99043			1	
EIKSELK	2	Acetyl (K)	887.4964	0.49639797	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			32.924	24.365	2	0.048919	13841	160513_QHF_FH_JSI10Kac_3	60.59	7.4234			0.85012	0.99452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85012	0.99452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5626800	3073200	2553600	0	0	0	5626800	3073200	2553600	0	0	0	0	0	0	11937	2094	11308	73266	99044	99044			1	
EILAELTGRK	1	Unmodified	1128.6503	0.65027285	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	45.052	44.496	2;3	9.0422E-15	39009	160511_QHF_FH_JSI11i_3	140.49	107.11			1.1209	1.1752	27.347	9	3	Median	1.2799	1.1077	43.271	2	1	Median	1.1802	1.4466	29.377	2	1	Median	1.1209	1.075	9.6051	3	0	Median	1.1393	1.1527	44.471	2	1	Median	1312500000	587480000	725050000	119520000	49557000	69960000	187350000	91157000	96189000	679420000	274960000	404460000	326240000	171810000	154440000	11938	903	11309	73267;73268;73269;73270;73271;73272;73273;73274;73275	99045;99046;99047;99048;99049;99050;99051;99052;99053;99054;99055;99056;99057;99058;99059	99045			15	
EILAGKPAAQK	2	Unmodified	1124.6554	0.65535823	420	O60499	STX10	Syntaxin-10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.928	14.928	3	0.014115	12277	160511_QHF_FH_JSI11i_3	32.008	21.485			1.0727	0.96994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0727	0.96994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40315000	25116000	15199000	0	0	0	0	0	0	40315000	25116000	15199000	0	0	0	11939	420	11310	73276	99060	99060			1	
EILAKYPEIK	2	Acetyl (K)	1244.7016	0.70163972	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	71.279	60.543	2	0.002593	32385	160513_QHF_FH_JSI10Kac_4	78.655	32.497			0.33632	0.36874	242.98	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3757	1.5557	NaN	1	0	Median	0.013402	0.013603	NaN	1	1	Median	0.33632	0.36874	NaN	1	0	Median	8541700	6685100	1856600	0	0	0	2546500	1288800	1257800	4108700	4055800	52840	1886500	1340500	545960	11940	251	11311	73277;73278;73279	99061;99062;99063;99064	99061	134		4	
EILASFISGLFNFYEDLYFTYLEINPLVVTK	1	Unmodified	3657.8898	0.88984101	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.37	5.7		2	9	5	1		2	1	7	4	9	6	8	106.59	101.07	3;4	4.5757E-142	59793	160513_QHF_FH_JSI10Kac_6	248.95	236.84			1.0094	0.99058	30.635	25	4	Median	1.15	0.96364	22.741	3	2	Plateau	0.9178	1.109	45.281	8	0	Median	1.0797	1.0251	7.4561	6	1	Median	0.83035	0.86336	11.538	8	1	Median	2776800000	1670100000	1106700000	27030000	13624000	13406000	2413400000	1482700000	930690000	234090000	115920000	118160000	102230000	57795000	44440000	11941	1798	11312	73280;73281;73282;73283;73284;73285;73286;73287;73288;73289;73290;73291;73292;73293;73294;73295;73296;73297;73298;73299;73300;73301;73302;73303;73304;73305;73306	99065;99066;99067;99068;99069;99070;99071;99072;99073;99074;99075;99076;99077;99078;99079;99080;99081;99082;99083;99084;99085;99086;99087;99088;99089;99090;99091;99092;99093;99094;99095;99096;99097;99098;99099;99100;99101;99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115	99112			51	
EILDAFDK	1	Unmodified	949.47566	0.47566253	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			2	4	2	2	54.061	52.144	2	0.002221	47197	160511_QHF_FH_JSI10i_1	90.657	90.657			0.92949	0.90231	17.979	9	3	Median	1.221	1.0226	18.551	2	0	Median	0.65307	0.76953	23.14	3	2	Median	1.0099	0.99033	13.163	2	1	Median	0.83479	0.91131	24.21	2	0	Median	2724400000	1315400000	1409000000	645960000	300040000	345920000	672460000	318110000	354350000	599110000	264800000	334320000	806890000	432490000	374400000	11942	873	11313	73307;73308;73309;73310;73311;73312;73313;73314;73315;73316	99116;99117;99118;99119;99120;99121;99122;99123;99124;99125;99126;99127;99128	99122			13	
EILDGLAYIHEK	1	Unmodified	1399.7347	0.73473076	5217	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.628	64.08	3	0.03417	55780	160511_QHF_FH_JSI11i_2	24.558	20.18			1.3936	1.4159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3936	1.4159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19342000	7166200	12176000	0	0	0	0	0	0	19342000	7166200	12176000	0	0	0	11943	5217	11314	73317	99129	99129			1	
EILDKKVEK	3	2 Acetyl (K)	1184.6653	0.66525421	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	2	0	0	2			By MS/MS		13	0						1						1		51.222	41.735	2	0.043127	22907	160513_QHF_FH_JSI11Kac_3	76.465	27.669			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	794360	794360	0	0	0	0	0	0	0	794360	794360	0	0	0	0	11944	898	11315	73318	99130	99130	648		1	
EILDLVCK	1	Unmodified	988.52632	0.52631789	2963	Q5TAX3	ZCCHC11	Terminal uridylyltransferase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	55.493	54.723	2	0.0075435	49365	160511_QHF_FH_JSI10i_1	68.915	20.354			0.94709	1.072	68.929	6	6	Median	2.2949	1.9799	NaN	1	1	Median	0.51531	0.61042	6.5299	2	2	Median	1.0988	1.0801	104.56	2	2	Median	1.6005	1.7977	NaN	1	1	Median	235640000	115930000	119710000	34184000	15629000	18555000	60455000	38473000	21982000	91360000	38468000	52892000	49644000	23360000	26284000	11945	2963	11316	73319;73320;73321;73322;73323;73324	99131;99132;99133;99134;99135;99136	99133			6	
EILEQGLFSK	1	Unmodified	1162.6234	0.6233894	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							2		1		62.907	62.173	2	1.6854E-06	54200	160511_QHF_FH_JSI11i_2	132.88	69.456			1.7221	1.618	38.013	2	2	Median	2.4124	2.1169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2293	1.2366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	489500000	202860000	286640000	126340000	35626000	90712000	0	0	0	363160000	167230000	195930000	0	0	0	11946	4448	11317	73325;73326;73327	99137;99138;99139;99140	99140			4	
EILETLIK	1	Unmodified	957.57465	0.57464829	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.29	2	4	1				1	1		1	4	3	1	67.085	63.867	2	0.00045611	55715	160511_QHF_FH_JSI11i_2	107.66	28.068			0.82611	0.89622	23.487	8	2	Median	0.8276	0.70711	NaN	1	0	Median	0.99719	1.2059	34.99	3	1	Plateau	0.80791	0.80845	13.828	3	1	Median	0.97181	1.0907	NaN	1	0	Median	768250000	368590000	399650000	113520000	52598000	60923000	207620000	113650000	93975000	286050000	128420000	157640000	161050000	73931000	87120000	11947	2242	11318	73328;73329;73330;73331;73332;73333;73334;73335;73336	99141;99142;99143;99144;99145;99146;99147;99148;99149;99150;99151;99152;99153	99151			13	
EILFLSLVSLGR	0	Unmodified	1345.7969	0.79693709	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	97.045	87.727	2	0.00067738	50134	160513_QHF_FH_JSI9Kac_6	99.283	46.493			1.2516	1.093	12.213	3	0	Plateau	1.3148	1.1121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1486	1.0547	NaN	1	0	Median	0.82684	0.88096	NaN	1	0	Median	159090000	82843000	76251000	60356000	29352000	31003000	0	0	0	58482000	30518000	27964000	40256000	22973000	17283000	11948	3000	11319	73337;73338;73339	99154;99155;99156	99155			2	
EILFYDR	0	Unmodified	954.48108	0.48108226	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.05	1	5	3				1	4		3	3	4	4	56.951	52.231	2	0.0010332	45426	160511_QHF_FH_JSI11i_2	111.65	62.888			1.1652	1.1961	27.811	13	4	Median	1.447	1.2423	22.408	3	1	Plateau	1.1006	1.3512	28.433	3	2	Median	1.3767	1.3888	20.636	3	1	Plateau	1.1146	1.2189	40.618	4	0	Median	2122900000	957740000	1165100000	355430000	144840000	210590000	536030000	241190000	294840000	644080000	290410000	353670000	587340000	281300000	306040000	11949	2282	11320	73340;73341;73342;73343;73344;73345;73346;73347;73348;73349;73350;73351;73352;73353	99157;99158;99159;99160;99161;99162;99163;99164;99165;99166;99167;99168;99169;99170;99171;99172	99166			16	
EILFYRK	1	Unmodified	967.5491	0.54910224	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	3	1	1	38.934	36.838	2;3	0.0028802	29917	160511_QHF_FH_JSI9i_3	70.268	60.751			0.82653	0.81893	28.043	7	2	Median	1.1029	0.89466	31.491	2	1	Median	0.60223	0.69741	9.7091	3	1	Median	1.5441	1.4537	NaN	1	0	Median	0.82653	0.86886	NaN	1	0	Median	644460000	332500000	311960000	221250000	97711000	123540000	221720000	131050000	90661000	143390000	71321000	72067000	58105000	32417000	25688000	11950	403	11321	73354;73355;73356;73357;73358;73359;73360	99173;99174;99175;99176;99177;99178;99179;99180;99181;99182;99183;99184;99185;99186	99180			14	
EILGTAQSVGCNVDGR	0	Unmodified	1674.7995	0.79953264	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.57	4	7				2	3			3	5	3	5	47.365	43.734	2	4.1743E-117	39011	160511_QHF_FH_JSI9i_1	279.75	255.52			0.8959	0.95307	26.535	13	6	Median	0.80813	0.67583	12.091	3	2	Plateau	0.74351	0.8884	31.777	4	2	Median	0.76494	0.76755	30.615	2	1	Median	0.98375	1.0447	17.858	4	1	Median	1753100000	987220000	765880000	246360000	136710000	109650000	447750000	277490000	170250000	630710000	339560000	291140000	428280000	233450000	194830000	11951	1340	11322	73361;73362;73363;73364;73365;73366;73367;73368;73369;73370;73371;73372;73373;73374;73375;73376	99187;99188;99189;99190;99191;99192;99193;99194;99195;99196;99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207;99208	99198			22	
EILHCLK	1	Unmodified	911.48987	0.48987281	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	2	4	24.026	23.604	2;3	0.0030038	20522	160511_QHF_FH_JSI10i_2	68.915	58.042			1.0664	1.1334	64.626	6	2	Median	NaN	NaN	NaN	0	0	Median	0.66021	0.81773	NaN	1	0	Median	0.59951	0.58884	50.198	2	1	Median	1.9325	1.9976	19.516	3	1	Median	545810000	264890000	280920000	0	0	0	78685000	43147000	35539000	204430000	126240000	78188000	262700000	95507000	167190000	11952	2282	11323	73377;73378;73379;73380;73381;73382;73383	99209;99210;99211;99212;99213	99211			5	
EILHCLKNK	2	Acetyl (K)	1195.6383	0.63832796	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		43.148	33.528	2;3	0.0027067	18322	160513_QHF_FH_JSI11Kac_6	84.476	32.621			0.073392	0.072347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073392	0.072347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21086000	20714000	372370	0	0	0	0	0	0	21086000	20714000	372370	0	0	0	11953	2282	11324	73384;73385	99214;99215	99214	2375		2	
EILHFHYTTWPDFGVPESPASFLNFLFK	1	Unmodified	3338.6441	0.64407185	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	99.218	91.708	3;4	1.1281E-71	54579	160513_QHF_FH_JSI10Kac_6	202.46	187.98			0.69977	0.89099	24.261	4	0	Linear	0.91637	0.79098	NaN	1	0	Median	0.7526	0.89099	7.826	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2567	1.361	NaN	1	0	Median	1556200000	920540000	635640000	237180000	116660000	120520000	1291600000	791140000	500460000	0	0	0	27395000	12739000	14656000	11954	1133	11325	73386;73387;73388;73389	99216;99217;99218;99219;99220;99221	99220			6	
EILHFPK	1	Unmodified	882.49634	0.49633839	2345	Q13049	TRIM32	E3 ubiquitin-protein ligase TRIM32	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	41.757	40.586	3	0.015275	35608	160511_QHF_FH_JSI10i_2	38.792	12.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11955	2345	11326	73390;73391	99222;99223	99223			2	
EILHNTEK	1	Unmodified	982.50836	0.50835964	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	8.6181	8.2487	2;3	0.003017	6161	160511_QHF_FH_JSI9i_2	82.452	31.487			0.74625	0.87446	65.397	4	4	Median	0.44324	0.38428	NaN	1	1	Median	1.1051	1.322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.858	0.92925	67.039	2	2	Median	238230000	132010000	106220000	56396000	33830000	22566000	63566000	37372000	26194000	0	0	0	118270000	60810000	57462000	11956	2804	11327	73392;73393;73394;73395	99224;99225;99226;99227	99225			4	
EILINTLHK	1	Unmodified	1079.6339	0.63389451	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		55.088	54.439	3	0.05072	43940	160511_QHF_FH_JSI10i_2	24.838	14.466			0.18649	0.15965	73.027	3	3	Plateau	0.28723	0.24292	NaN	1	1	Median	0.53317	0.62889	NaN	1	1	Median	0.16382	0.14969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142250000	113570000	28679000	54165000	41084000	13080000	17528000	12383000	5145400	70555000	60102000	10453000	0	0	0	11957	15	11328	73396;73397;73398	99228;99229;99230	99230			3	
EILIPVFK	1	Unmodified	957.5899	0.58990443	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.01	4	4	4				2	4		4	5	4	5	83.825	79.92	2	0.00052479	72662	160511_QHF_FH_JSI11i_2	105.39	67.153			1.0129	1.0387	15.978	18	1	Median	1.2527	1.01	1.7179	4	0	Linear	0.88469	1.0233	5.8752	5	0	Median	1.0001	1.0015	8.9267	4	0	Median	1.1467	1.2174	21.705	5	1	Median	3282600000	1613400000	1669300000	619020000	280100000	338920000	842360000	420380000	421980000	1064300000	517810000	546450000	757000000	395080000	361920000	11958	1798	11329	73399;73400;73401;73402;73403;73404;73405;73406;73407;73408;73409;73410;73411;73412;73413;73414;73415;73416	99231;99232;99233;99234;99235;99236;99237;99238;99239;99240;99241;99242;99243;99244;99245;99246;99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261;99262;99263;99264;99265	99257			35	
EILIPVFKNMADAMR	1	Acetyl (K)	1788.9266	0.92664741	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	96.236	86.815	2;3	0.0014907	47277	160513_QHF_FH_JSI12Kac_6	121.04	66.265			1.3247	1.336	68.602	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86277	0.82252	NaN	1	0	Median	2.0338	2.1701	NaN	1	1	Median	123430000	55314000	68118000	0	0	0	0	0	0	81664000	48745000	32919000	41768000	6569600	35198000	11959	1798	11330	73417;73418	99266;99267	99267	1812		2	
EILIPVFKNMADAMR	1	Acetyl (K);2 Oxidation (M)	1820.9165	0.91647665	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	2	1			By MS/MS		15	0								1				1		85.963	75.454	3	0.029736	39702	160513_QHF_FH_JSI11Kac_5	30.961	19.522			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11960	1798	11330	73419	99268	99268	1812		1	
EILLEMIHSIQNSQDMR	0	Unmodified	2056.0081	0.0081452054	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	4.89		1	9						2	2	4	4	2	94.714	93.215	2;3	1.4647E-52	85826	160511_QHF_FH_JSI11i_3	222.79	206.65			0.98634	1.069	34.584	10	3	Median	0.95561	0.81153	NaN	1	0	Median	0.8305	0.98144	14.022	3	0	Median	0.85362	0.79684	49.711	4	1	Median	1.1887	1.2012	4.3963	2	2	Median	907320000	461900000	445420000	95185000	42047000	53138000	238920000	122370000	116560000	347910000	181510000	166400000	225300000	115980000	109320000	11961	731	11331	73420;73421;73422;73423;73424;73425;73426;73427;73428;73429;73430;73431	99269;99270;99271;99272;99273;99274;99275;99276;99277;99278;99279;99280;99281;99282;99283	99271			15	
EILLEMIHSIQNSQDMR	0	Oxidation (M)	2072.0031	0.0030598275	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	90.472	90.407	2	0.0013665	78480	160511_QHF_FH_JSI12i_3	66.262	53.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11962	731	11331	73432	99284	99284		251	1	
EILNLTSELLQK	1	Unmodified	1399.7922	0.79224564	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	88.168	87.468	2	2.7623E-10	77730	160511_QHF_FH_JSI10i_2	127.42	94.424			0.36568	0.36071	0.12002	2	2	Median	0.41181	0.36102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32473	0.3604	NaN	1	1	Median	58500000	40731000	17769000	30408000	22611000	7796700	0	0	0	0	0	0	28092000	18120000	9972500	11963	3312	11332	73433;73434;73435	99285;99286;99287	99287			3	
EILPFTDRK	1	Unmodified	1117.6132	0.61315906	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	42.003	41.891	3	0.0015273	36934	160511_QHF_FH_JSI11i_3	52.705	41.744			0.91295	0.90385	6.3844	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0197	0.94559	NaN	1	0	Median	0.81737	0.86395	NaN	1	0	Median	162490000	86348000	76146000	0	0	0	0	0	0	115340000	64664000	50673000	47157000	21684000	25474000	11964	5376	11333	73436;73437	99288;99289	99289			2	
EILQDLVK	1	Unmodified	956.55425	0.5542472	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	57.629	56.963	2	0.0061634	51498	160511_QHF_FH_JSI11i_1	63.419	20.55			0.93249	0.96824	16.374	6	1	Median	1.298	1.0843	NaN	1	0	Median	0.68163	0.84243	9.0023	2	1	Median	1.035	1.0048	25.684	2	0	Median	1.0103	1.0442	NaN	1	0	Median	318700000	168200000	150500000	33165000	15813000	17351000	106400000	58899000	47505000	127620000	67769000	59851000	51511000	25723000	25788000	11965	2997	11334	73438;73439;73440;73441;73442;73443	99290;99291;99292;99293;99294	99290			5	
EILQEEEDLAEIVQLVGK	1	Unmodified	2054.0783	0.078316486	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	102.21	102.13	3	4.0524E-09	89894	160511_QHF_FH_JSI11i_2	129.32	115.06			0.60278	0.67055	22.824	4	3	Median	NaN	NaN	NaN	0	0	Median	0.64532	0.77089	NaN	1	1	Median	0.71241	0.71572	28.94	2	1	Median	0.53317	0.54189	NaN	1	1	Median	725840000	485390000	240460000	0	0	0	130560000	76330000	54225000	512810000	347810000	165000000	82477000	61244000	21233000	11966	1479	11335	73444;73445;73446;73447	99295;99296;99297;99298	99298			4	
EILQNTTSLK	1	Unmodified	1145.6292	0.62920306	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	34.82	34.427	2	0.011603	30795	160511_QHF_FH_JSI11i_1	71.614	38.063			0.7443	0.75854	21.026	3	0	Median	NaN	NaN	NaN	0	0	Median	0.5703	0.66586	NaN	1	0	Median	1.022	1.0048	NaN	1	0	Median	0.7443	0.75854	NaN	1	0	Median	111960000	64919000	47046000	0	0	0	38104000	25771000	12333000	41393000	19580000	21814000	32467000	19568000	12899000	11967	557	11336	73448;73449;73450	99299	99299			0	
EILSEENEMQPNGK	1	Unmodified	1616.7352	0.73520105	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	36.993	36.431	2	3.0421E-30	32964	160511_QHF_FH_JSI12i_1	194.17	178.3			1.0957	1.1261	15.047	5	2	Median	1.3139	1.1016	NaN	1	0	Median	0.87134	1.0247	23.325	2	2	Median	1.3091	1.2923	NaN	1	0	Median	1.0957	1.1261	NaN	1	0	Median	418000000	212860000	205140000	63808000	36524000	27284000	179640000	94229000	85413000	93745000	43709000	50037000	80808000	38400000	42407000	11968	418	11337	73451;73452;73453;73454;73455;73456	99300;99301;99302;99303;99304;99305;99306;99307;99308	99304			9	
EILSELGK	1	Unmodified	887.4964	0.49639797	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.4	0.49	3	2								1	2	2		43.453	42.764	2	0.00081956	38585	160511_QHF_FH_JSI11i_1	97.798	28.883			1.6502	1.4756	36.888	5	2	Median	1.814	1.4756	NaN	1	0	Median	1.5786	1.8534	66.883	2	1	Median	1.4722	1.4661	17.939	2	1	Median	NaN	NaN	NaN	0	0	Median	462640000	196020000	266620000	55606000	19972000	35634000	180080000	81294000	98790000	226950000	94759000	132200000	0	0	0	11969	3860	11338	73457;73458;73459;73460;73461	99309;99310;99311;99312	99309			4	
EILSEVER	0	Unmodified	973.50803	0.50802529	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	33.345	32.316	2	0.00045611	27539	160511_QHF_FH_JSI11i_2	107.66	9.3653			1.1706	1.0919	13.644	5	0	Median	1.3095	1.0807	4.9838	2	0	Median	0.8844	1.0919	NaN	1	0	Median	0.86956	0.90445	NaN	1	0	Median	1.1706	1.3213	NaN	1	0	Median	2612600000	1285400000	1327100000	658360000	256060000	402300000	434560000	233630000	200930000	764170000	401150000	363010000	755480000	394590000	360890000	11970	1655	11339	73462;73463;73464;73465;73466	99313;99314;99315;99316;99317;99318;99319;99320	99318			8	
EILSNINGIMK	1	Unmodified	1230.6642	0.66420836	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	66.083	65.359	2	3.4769E-06	57954	160511_QHF_FH_JSI10i_2	122.44	60.48			0.97029	1.0501	64.617	4	4	Median	NaN	NaN	NaN	0	0	Median	1.4268	1.7333	15.652	2	2	Median	0.73394	0.71059	NaN	1	1	Median	0.44253	0.4907	NaN	1	1	Median	466430000	267510000	198930000	0	0	0	182200000	78301000	103900000	79061000	39479000	39582000	205170000	149730000	55446000	11971	5445	11340	73467;73468;73469;73470;73471	99321;99322;99323;99324;99325	99325			5	
EILSNINGIMKPGLNAILGPTGGGK	2	Unmodified	2463.3519	0.35192935	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				100.37	100.16	3	8.4945E-05	81151	160511_QHF_FH_JSI9i_3	53.747	37.773			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11972	5445	11341	73472	99326	99326			1	
EILTLLQGVHQGAGFQDIPK	1	Unmodified	2163.1688	0.16880325	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.09		10	14						5	6	6	7	10	88.9	87.232	2;3;4	6.5312E-56	79226	160511_QHF_FH_JSI10i_2	182.57	161.32			0.72894	0.77628	82.413	26	24	Median	0.91352	0.772	118	4	4	Median	0.828	0.97674	71.803	5	4	Median	0.64173	0.61697	72.152	7	6	Median	0.73183	0.75959	90.709	10	10	Median	7296500000	3607200000	3689300000	490930000	218540000	272380000	1055900000	589190000	466750000	2652800000	1161200000	1491500000	3096800000	1638200000	1458700000	11973	2688	11342	73473;73474;73475;73476;73477;73478;73479;73480;73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492;73493;73494;73495;73496;73497;73498;73499;73500;73501	99327;99328;99329;99330;99331;99332;99333;99334;99335;99336;99337;99338;99339;99340;99341;99342;99343;99344;99345;99346;99347;99348;99349;99350;99351;99352;99353;99354;99355;99356;99357;99358;99359;99360;99361;99362;99363;99364;99365;99366;99367;99368;99369;99370;99371;99372;99373	99359			47	
EILVGDVGQTVDDPYATFVK	1	Unmodified	2165.0892	0.089215523	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.832	13	9	9							9	9	8	5	93.113	92.651	2;3	0	84379	160511_QHF_FH_JSI11i_1	400.96	343.12			1.0062	1.0154	14.855	26	8	Median	1.0698	0.92737	20.343	7	1	Median	0.80656	0.98162	8.4318	7	2	Median	1.0747	1.033	11.024	7	3	Median	1.0366	1.1016	12.144	5	2	Median	23220000000	10327000000	12892000000	4423500000	1819500000	2603900000	7027300000	3289600000	3737700000	6193900000	2892900000	3301000000	5575000000	2325200000	3249800000	11974	1236	11343	73502;73503;73504;73505;73506;73507;73508;73509;73510;73511;73512;73513;73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525;73526;73527;73528;73529;73530;73531;73532	99374;99375;99376;99377;99378;99379;99380;99381;99382;99383;99384;99385;99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397;99398;99399;99400;99401;99402;99403;99404;99405;99406;99407;99408;99409;99410;99411;99412;99413;99414;99415;99416;99417;99418;99419;99420;99421;99422;99423;99424;99425;99426;99427;99428;99429;99430;99431;99432;99433;99434;99435;99436;99437;99438;99439;99440;99441;99442;99443;99444;99445;99446;99447;99448	99379			74	
EILVGDVGVTITDPFK	1	Unmodified	1701.9189	0.91890272	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.64	8	3	1							3	3	3	3	101.05	100.92	2;3	3.1464E-65	91535	160511_QHF_FH_JSI11i_1	227.57	176.13			0.93224	1.0023	17.305	12	7	Median	1.0687	0.91854	21.046	3	2	Median	0.9124	1.0491	6.9621	3	1	Median	1.1297	1.1258	23.085	3	2	Median	0.84399	0.90125	7.5561	3	2	Median	1326500000	658210000	668270000	231710000	108330000	123380000	363860000	185510000	178340000	268410000	135500000	132910000	462500000	228870000	233640000	11975	1925	11344	73533;73534;73535;73536;73537;73538;73539;73540;73541;73542;73543;73544	99449;99450;99451;99452;99453;99454;99455;99456;99457;99458;99459;99460;99461;99462;99463;99464	99450			16	
EILWRPK	1	Unmodified	940.54944	0.54943659	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		36.638	35.472	2;3	0.0041287	29637	160511_QHF_FH_JSI10i_3	73.039	22.073			0.88959	0.98085	20.334	5	0	Median	1.2186	0.99161	1.5432	2	0	Median	0.84951	0.97788	4.2638	2	0	Median	0.66189	0.62689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1240000000	661600000	578410000	523550000	264510000	259030000	430920000	252150000	178770000	285560000	144940000	140610000	0	0	0	11976	900	11345	73545;73546;73547;73548;73549	99465;99466;99467;99468;99469;99470	99466			6	
EILYGTNEK	1	Unmodified	1065.5342	0.53424004	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				26.429	25.172	2	0.027043	21686	160511_QHF_FH_JSI9i_1	48.794	13.499			0.89409	0.7192	NaN	1	1	Median	0.89409	0.7192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60263000	30278000	29985000	60263000	30278000	29985000	0	0	0	0	0	0	0	0	0	11977	5561	11346	73550	99471	99471			1	
EIMAEDDQVFLMK	1	Unmodified	1567.7262	0.72621627	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		75.855	75.248	2	0.00010154	66794	160511_QHF_FH_JSI9i_1	93.258	64.3			1.2217	1.0878	25.987	2	1	Median	1.1173	0.90522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.336	1.3073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126780000	52864000	73919000	42585000	21361000	21224000	0	0	0	84197000	31503000	52694000	0	0	0	11978	5725	11347	73551;73552	99472;99473	99473			2	
EIMDAAEDYAK	1	Unmodified	1254.5438	0.54381845	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			42.498	41.686	2	9.6591E-05	36934	160511_QHF_FH_JSI9i_1	98.943	67.008			0.87147	0.86536	20.168	2	2	Median	1.1995	0.998	NaN	1	1	Median	0.63317	0.75034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	379660000	184170000	195500000	150150000	59662000	90487000	229510000	124500000	105010000	0	0	0	0	0	0	11979	1064	11348	73553;73554	99474;99475	99475			2	
EIMEILNEHLLDK	1	Unmodified	1595.8229	0.82289384	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	84.906	84.194	3	0.0021904	73920	160511_QHF_FH_JSI11i_2	57.434	46.647			1.2459	1.4903	89.453	4	3	Median	NaN	NaN	NaN	0	0	Median	1.2459	1.5138	90.224	2	1	Median	2.855	2.7769	NaN	1	1	Median	0.43802	0.48658	NaN	1	1	Median	48342000	25273000	23069000	0	0	0	25508000	14140000	11368000	14079000	5004800	9074500	8754800	6128500	2626300	11980	2793	11349	73555;73556;73557;73558;73559	99476;99477;99478;99479;99480	99478			5	
EIMLAAKK	2	Unmodified	902.52592	0.52592396	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	20.749	20.749	2	0.0038831	16933	160511_QHF_FH_JSI12i_3	91.906	51.803			6.7282	7.113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.7282	7.113	NaN	1	1	Median	97567000	4669100	92898000	0	0	0	0	0	0	39075000	0	39075000	58492000	4669100	53823000	11981	974	11350	73560;73561	99481;99482	99482			2	
EIMLGLK	1	Unmodified	802.46226	0.46226107	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.388	52.418	2	0.011105	44866	160511_QHF_FH_JSI12i_2	71.949	41.281			1.0541	1.1176	11.479	4	0	Median	1.1636	0.99782	NaN	1	0	Median	1.0345	1.2698	NaN	1	0	Median	1.0185	1.0398	NaN	1	0	Median	1.074	1.2012	NaN	1	0	Median	482900000	221650000	261240000	85894000	35688000	50206000	114340000	41786000	72555000	136010000	69561000	66453000	146650000	74620000	72028000	11982	2242	11351	73562;73563;73564;73565	99483;99484;99485;99486;99487;99488;99489	99484			7	
EINDCIGGTVLNISK	1	Unmodified	1631.8189	0.8188711	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.684	69.09	2	4.42E-05	62946	160511_QHF_FH_JSI12i_1	79.614	54.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11983	596	11352	73566	99490	99490			1	
EINDMKAK	2	Acetyl (K);Oxidation (M)	1005.4801	0.48009598	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		15.623	8.2433	2	0.00065205	6672	160513_QHF_FH_JSI11Kac_3	94.302	49.855			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3283900	3283900	0	0	0	0	0	0	0	3283900	3283900	0	0	0	0	11984	2252	11353	73567	99491	99491	2354	1863	1	
EINDMKAK	2	Acetyl (K)	989.48518	0.48518136	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	0	1			By MS/MS		13	0						2						2		26.664	19.002	2	0.019734	11710	160513_QHF_FH_JSI11Kac_3	67.897	20.049			1.2179	1.1883	336.16	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2179	1.1883	336.16	2	2	Median	NaN	NaN	NaN	0	0	Median	11817000	8056100	3760800	0	0	0	0	0	0	11817000	8056100	3760800	0	0	0	11985	2252	11353	73568;73569	99492;99493	99493	2354		2	
EINGIHDESNAFESK	1	Unmodified	1688.7642	0.76419299	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								1	2	3	4	36.725	35.801	2;3	1.0069E-06	30665	160511_QHF_FH_JSI11i_2	130.1	100.29			0.85864	0.88728	67.358	7	6	Median	NaN	NaN	NaN	0	0	Median	0.48471	0.58538	NaN	1	1	Median	0.85864	0.88728	60.035	3	2	Median	1.8763	2.0524	71.049	3	3	Median	323250000	151460000	171790000	8865600	0	8865600	56487000	34359000	22128000	118670000	59567000	59106000	139220000	57535000	81687000	11986	3799	11354	73570;73571;73572;73573;73574;73575;73576;73577;73578;73579	99494;99495;99496;99497;99498;99499;99500;99501;99502;99503;99504;99505;99506	99504			13	
EINNAHAILTDATK	1	Unmodified	1509.7787	0.77872084	4706	Q9H3Z4	DNAJC5	DnaJ homolog subfamily C member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	39.841	39.128	2	9.8313E-10	33552	160511_QHF_FH_JSI12i_2	104.24	77.73			0.14009	0.14485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14009	0.14485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27277000	17202000	10075000	0	0	0	5820600	0	5820600	21456000	17202000	4254000	0	0	0	11987	4706	11355	73580;73581;73582;73583;73584	99507;99508;99509;99510;99511	99507			5	
EINNPESVYYWAQK	1	Unmodified	1739.8155	0.81550028	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	67.74	66.936	2	3.5097E-06	60674	160511_QHF_FH_JSI10i_1	124.42	102.43			0.60291	0.68458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60291	0.68458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39621000	25392000	14229000	0	0	0	31542000	17312000	14229000	0	0	0	8079900	8079900	0	11988	1654	11356	73585;73586	99512;99513	99513			2	
EINNPMFR	0	Unmodified	1019.4859	0.48585006	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.8	0.4	1	4								1	1	2	1	41.976	41.135	2	0.0020854	36323	160511_QHF_FH_JSI10i_2	93.195	55.062			1.1801	1.1246	10.201	5	0	Median	1.2053	1.0342	NaN	1	0	Median	0.76476	0.93477	NaN	1	0	Median	1.1872	1.1647	4.9536	2	0	Median	1.0484	1.1614	NaN	1	0	Median	413800000	179440000	234360000	80166000	31949000	48217000	86039000	46503000	39536000	144150000	57484000	86667000	103450000	43505000	59941000	11989	238	11357	73587;73588;73589;73590;73591	99514	99514			1	
EINSDQATQGNISSDR	0	Unmodified	1733.7816	0.78163397	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	22.32	21.789	2	1.7091E-80	18852	160511_QHF_FH_JSI11i_1	289.89	267.25			0.99433	0.95839	18.376	4	0	Median	1.2288	1.0107	NaN	1	0	Median	0.61597	0.71934	NaN	1	0	Median	1.1199	1.0997	NaN	1	0	Median	0.88287	0.90877	NaN	1	0	Median	324380000	163180000	161210000	70962000	31730000	39233000	91400000	49574000	41826000	91351000	46659000	44692000	70668000	35213000	35455000	11990	2789	11358	73592;73593;73594;73595;73596	99515;99516;99517;99518;99519;99520;99521;99522;99523	99516			9	
EINSDQATQGNISSDRGK	1	Unmodified	1918.8981	0.89806071	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			17.446	17.193	3	0.0011274	14600	160511_QHF_FH_JSI10i_1	58.49	46.969			1.0212	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0212	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26523000	11326000	15196000	0	0	0	26523000	11326000	15196000	0	0	0	0	0	0	11991	2789	11359	73597	99524	99524			1	
EINTNQEALK	1	Unmodified	1158.5881	0.58806652	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	22.304	21.995	2	0.00041962	19028	160511_QHF_FH_JSI11i_1	89.029	51.87			0.67023	0.79427	36.538	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67023	0.79427	NaN	1	1	Median	0.63289	0.61306	NaN	1	1	Median	1.2297	1.2611	NaN	1	1	Median	213940000	121060000	92881000	0	0	0	58931000	34885000	24046000	73947000	40564000	33383000	81058000	45606000	35452000	11992	3926	11360	73598;73599;73600	99525;99526;99527	99525			3	
EINYILR	0	Unmodified	919.51272	0.51271674	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS		8.5	6.5		1						1				2		47.579	47.066	2	0.033472	40571	160511_QHF_FH_JSI11i_2	52.018	8.2035			1.133	1.1453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.133	1.1453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172880000	84950000	87931000	0	0	0	0	0	0	172880000	84950000	87931000	0	0	0	11993	3290	11361	73601;73602	99528;99529	99528			2	
EIPAKIIFEDDR	1	Acetyl (K)	1486.7668	0.76675917	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	1	0	0	1			By MS/MS	By matching	15	0								2				1	1	83.396	72.926	2	0.012012	38519	160513_QHF_FH_JSI11Kac_5	55.426	30.588			0.73694	0.74623	44.78	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56628	0.5437	NaN	1	0	Median	0.95904	1.0242	NaN	1	0	Median	8324000	5349300	2974700	0	0	0	0	0	0	6398600	4378900	2019800	1925400	970430	954930	11994	1683	11362	73603;73604	99530	99530	1702		1	
EIPETTPIEEVK	1	Unmodified	1383.7133	0.71332662	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	53.943	53.322	2	0.00061947	48109	160511_QHF_FH_JSI10i_1	82.261	43.968			0.71514	0.70821	36.087	6	6	Median	1.1816	0.97447	NaN	1	1	Median	0.43261	0.51647	NaN	1	1	Median	0.71514	0.6928	31.135	2	2	Median	0.83067	0.85533	54.715	2	2	Median	1141300000	647530000	493760000	168800000	72118000	96680000	186510000	125090000	61425000	430430000	264510000	165920000	355550000	185810000	169730000	11995	3206	11363	73605;73606;73607;73608;73609;73610	99531;99532;99533;99534;99535;99536	99535			6	
EIPIEGLEFMGHGK	1	Unmodified	1555.7705	0.77046434	364	O43715	TRIAP1	TP53-regulated inhibitor of apoptosis 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.734	77.915	3	2.4389E-05	68401	160511_QHF_FH_JSI11i_2	108.58	99.259			0.88345	0.94421	3.3296	4	0	Median	1.0926	0.95124	NaN	1	0	Median	0.74404	0.8941	NaN	1	0	Median	0.94906	0.96559	NaN	1	0	Median	0.82237	0.93724	NaN	1	0	Median	226850000	120880000	105970000	32016000	16149000	15867000	56491000	28625000	27866000	85310000	45172000	40138000	53032000	30937000	22096000	11996	364	11364	73611;73612;73613;73614	99537;99538;99539;99540	99538			4	
EIPIPFYLSVYFFDVMNPSEILK	1	Unmodified	2760.4125	0.41246392	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.2	98.483	2;3	1.1019E-73	58276	160513_QHF_FH_JSI10Kac_6	211.17	188.69			0.87716	1.0394	0.36111	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87716	1.0394	0.36111	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	278780000	155390000	123400000	0	0	0	278780000	155390000	123400000	0	0	0	0	0	0	11997	3749	11365	73615;73616	99541;99542;99543;99544	99543			4	
EIPIVHR	0	Unmodified	862.50249	0.5024864	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			4								1	1	2	27.756	27.406	2	0.010327	23603	160511_QHF_FH_JSI11i_3	75.311	18.8			1.0205	0.99603	27.383	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7459	0.85291	NaN	1	0	Median	1.0719	1.0045	NaN	1	0	Median	1.2456	1.2583	34.247	2	0	Median	334880000	158540000	176340000	0	0	0	35143000	19108000	16034000	118700000	61887000	56813000	181040000	77541000	103500000	11998	2067	11366	73617;73618;73619;73620	99545;99546;99547;99548;99549	99546			5	
EIPLSETERGEVEEDK	1	Unmodified	1858.8796	0.87961668	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	40.08	39.168	3	0.031222	33613	160511_QHF_FH_JSI11i_2	36.112	19.684			1.0372	1.0958	2.2325	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0171	1.0786	NaN	1	1	Median	1.0578	1.1132	NaN	1	1	Median	54663000	28741000	25922000	0	0	0	0	0	0	38176000	19482000	18694000	16487000	9258900	7228000	11999	2574	11367	73621;73622	99550;99551	99551			2	
EIPPLLGLEK	1	Unmodified	1107.654	0.65396125	4741	Q9H6D7	HAUS4	HAUS augmin-like complex subunit 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.262	79.636	2	0.012973	70068	160511_QHF_FH_JSI11i_2	54.416	30.262			0.36651	0.36577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36651	0.36577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18411000	11433000	6977700	0	0	0	0	0	0	18411000	11433000	6977700	0	0	0	12000	4741	11368	73623	99552	99552			1	
EIPSATQSPISK	1	Unmodified	1256.6612	0.66123147	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	39.205	38.498	2	0.00019599	34536	160511_QHF_FH_JSI11i_1	80.763	51.677			1.1663	0.95726	27.281	3	0	Median	1.1663	0.95726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72227	0.71618	NaN	1	0	Median	1.1784	1.2354	NaN	1	0	Median	540650000	282230000	258420000	138860000	69678000	69181000	0	0	0	200830000	101600000	99234000	200960000	110950000	90006000	12001	4361	11369	73624;73625;73626	99553;99554;99555	99553			2	
EIPSERDFFQEVK	1	Unmodified	1622.794	0.79403656	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	66.255	65.509	3	0.0011168	56520	160511_QHF_FH_JSI12i_3	63.76	38.042			0.89621	0.96242	11.459	4	1	Median	NaN	NaN	NaN	0	0	Median	0.79215	0.96054	NaN	1	0	Median	0.96083	0.96429	NaN	1	0	Median	0.92201	0.96254	19.845	2	1	Median	308410000	168860000	139550000	0	0	0	75720000	45405000	30314000	104970000	53246000	51728000	127710000	70206000	57509000	12002	171	11370	73627;73628;73629;73630	99556;99557;99558;99559;99560	99560			5	
EIPSHVLSK	1	Unmodified	1008.5604	0.56039521	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.07		10	7					2	5	5	5	8	6	31.788	28.436	2;3	9.0853E-06	24200	160511_QHF_FH_JSI12i_2	98.044	66.815			1.1505	1.1315	37.06	22	2	Median	1.4343	1.2275	19.934	5	0	Median	0.8698	1.0483	3.7567	4	0	Median	1.2935	1.2363	47.55	7	1	Median	0.9945	1.1124	50.099	6	1	Median	5198600000	2429500000	2769100000	671060000	309470000	361600000	693730000	321340000	372390000	1813400000	847140000	966270000	2020400000	951560000	1068800000	12003	2658	11371	73631;73632;73633;73634;73635;73636;73637;73638;73639;73640;73641;73642;73643;73644;73645;73646;73647;73648;73649;73650;73651;73652;73653;73654	99561;99562;99563;99564;99565;99566;99567;99568;99569;99570;99571;99572;99573;99574;99575;99576;99577;99578;99579;99580;99581;99582;99583;99584;99585;99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596	99567			36	
EIPVSIKK	2	Unmodified	912.56442	0.56441796	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	30.134	30.095	2;3	0.0039534	25279	160511_QHF_FH_JSI12i_3	57.96	16.931			2.8011	2.5908	119.77	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87069	0.81445	163.65	2	2	Median	3.0416	3.2098	79.929	3	3	Median	416380000	155280000	261100000	0	0	0	0	0	0	84057000	50219000	33839000	332320000	105060000	227260000	12004	4673	11372	73655;73656;73657;73658;73659	99597;99598;99599;99600;99601	99601			5	
EIPYTFEDR	0	Unmodified	1168.5401	0.5400537	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.69	5	4	2				2	2		5	4	2	4	55.118	51.539	2	1.9956E-06	44150	160511_QHF_FH_JSI12i_2	128.69	60.265			0.97832	1.0022	16.103	15	1	Median	1.3091	1.0765	14.072	5	1	Median	0.83085	0.96985	24.005	4	0	Median	0.96994	0.96084	11.39	2	0	Median	0.8943	0.97166	14.962	4	0	Median	5479800000	2734600000	2745200000	1393800000	620560000	773220000	1176900000	686720000	490200000	1607100000	801190000	805930000	1302000000	626100000	675880000	12005	1415	11373	73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674	99602;99603;99604;99605;99606;99607;99608;99609;99610;99611;99612;99613;99614;99615;99616;99617;99618;99619;99620;99621;99622;99623	99605			22	
EIQALEEFREK	1	Unmodified	1390.7092	0.70924429	4587	Q9C0E8	LNP	Protein lunapark	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.47	51.47	3	0.031156	45567	160511_QHF_FH_JSI11i_3	35.594	20.563			1.8435	1.7609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8435	1.7609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29785000	7324300	22461000	0	0	0	0	0	0	29785000	7324300	22461000	0	0	0	12006	4587	11374	73675	99624	99624			1	
EIQDDMQTLYVNTAADSFEFK	1	Unmodified	2464.1104	0.11042125	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			95.456	95.472	3	0.042286	86531	160511_QHF_FH_JSI10i_1	24.207	20.68			0.9994	1.089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9994	1.089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11454000	5509000	5944600	0	0	0	11454000	5509000	5944600	0	0	0	0	0	0	12007	28	11375	73676	99625	99625			1	
EIQEPDPTYEEK	1	Unmodified	1476.662	0.66201933	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	36.534	33.19	2	4.0364E-18	29091	160511_QHF_FH_JSI9i_1	169.37	135.41			1.0496	1.0382	13.592	6	2	Median	1.2013	0.96896	NaN	1	0	Median	0.89373	1.0201	7.9166	2	1	Median	1.3421	1.3289	NaN	1	0	Median	1.0434	1.1131	15.275	2	1	Median	731170000	365190000	365970000	176290000	88231000	88057000	197840000	102660000	95185000	199330000	89514000	109820000	157700000	84789000	72915000	12008	403	11376	73677;73678;73679;73680;73681;73682	99626;99627;99628;99629;99630;99631;99632;99633;99634;99635	99634			10	
EIQGFFNIPVDNLR	0	Unmodified	1660.8573	0.85730551	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	3	1	1	97.643	97.501	2	6.8912E-07	85625	160511_QHF_FH_JSI11i_2	137.59	83.905			0.78424	0.71511	26.689	6	4	Median	0.78424	0.68424	16.057	2	2	Median	0.51762	0.59378	16.479	2	2	Median	0.94805	0.92703	NaN	1	0	Median	0.9904	1.0804	NaN	1	0	Median	193920000	103080000	90845000	62547000	31393000	31154000	43473000	27718000	15755000	49375000	25976000	23399000	38529000	17992000	20537000	12009	402	11377	73683;73684;73685;73686;73687;73688;73689	99636;99637;99638;99639;99640;99641;99642;99643;99644;99645;99646	99644			11	
EIQGHQPR	0	Unmodified	963.48863	0.48862725	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									3	3	5.2419	5.2992	2;3	0.00079816	2963	160511_QHF_FH_JSI11i_3	91.9	72.054			0.91381	0.92652	18.771	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88444	0.81021	1.9619	2	1	Median	0.91381	0.92652	14.106	3	2	Plateau	537560000	288160000	249400000	0	0	0	0	0	0	221310000	124400000	96906000	316260000	163760000	152500000	12010	2162	11378	73690;73691;73692;73693;73694;73695	99647;99648;99649;99650;99651;99652	99648			4	
EIQHHLK	1	Unmodified	903.49265	0.49265	4331;4332	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.597	5.6448	3	0.0025601	3373	160511_QHF_FH_JSI11i_3	68.915	34.662			0.98993	0.98776	14.287	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91688	0.89284	NaN	1	0	Median	1.0688	1.0928	NaN	1	0	Median	1771100000	757890000	1013200000	0	0	0	0	0	0	570720000	218060000	352670000	1200400000	539840000	660570000	12011	4331;4332	11379	73696;73697	99653;99654	99653			2	
EIQMAVLLK	1	Oxidation (M)	1059.5998	0.59981719	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			56.536	45.898	2	0.039553	25414	160513_QHF_FH_JSI10Kac_4	55.531	29.637			1.4487	1.702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4487	1.702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1829000	561980	1267000	0	0	0	1829000	561980	1267000	0	0	0	0	0	0	12012	3950	11380	73698	99655	99655			1	
EIQMLAR	0	Unmodified	859.45857	0.45857268	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		34.152	33.448	2	0.0089645	29166	160511_QHF_FH_JSI9i_2	84.699	42.47			0.42469	0.3992	86.123	4	4	Median	0.47606	0.41304	NaN	1	1	Median	0.30055	0.3705	NaN	1	1	Median	0.89802	0.91603	122.28	2	2	Median	NaN	NaN	NaN	0	0	Median	1530100000	848050000	682040000	270890000	143310000	127580000	348500000	219120000	129380000	910690000	485620000	425070000	0	0	0	12013	154	11381	73699;73700;73701;73702	99656;99657;99658;99659	99656			4	
EIQNASHR	0	Unmodified	953.46789	0.46789181	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			2.671	2.3045	2	0.031505	1200	160511_QHF_FH_JSI9i_2	49.715	29.929			0.80949	0.8292	31.055	2	1	Median	0.78779	0.66572	NaN	1	1	Median	0.83179	1.0328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18136000	10141000	7994400	7587500	4225700	3361800	10548000	5915400	4632600	0	0	0	0	0	0	12014	4868	11382	73703;73704	99660;99661	99660			2	
EIQNAVNGVK	1	Unmodified	1070.572	0.57202253	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	21.822	21.202	2	0.00012854	18514	160511_QHF_FH_JSI12i_1	98.033	53.266			0.74703	0.73788	112.39	4	4	Median	1.7454	1.4331	NaN	1	1	Median	0.31973	0.37992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82246	0.84579	169.98	2	2	Median	263280000	143290000	119980000	80655000	36168000	44487000	55361000	39628000	15733000	0	0	0	127260000	67498000	59764000	12015	981	11383	73705;73706;73707;73708;73709	99662;99663;99664;99665;99666	99662			5	
EIQNQTLPVDFFAHLR	0	Unmodified	1926.9952	0.99519598	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				93.426	93.167	3	0.0011054	81686	160511_QHF_FH_JSI9i_2	61.265	55.685			0.89052	0.76121	NaN	1	0	Median	0.89052	0.76121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88092000	31879000	56213000	88092000	31879000	56213000	0	0	0	0	0	0	0	0	0	12016	5239	11384	73710	99667	99667			0	
EIQQALVDAGDKPATFVGSR	1	Unmodified	2101.0804	0.080382171	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	60.663	60.05	3	4.453E-05	53370	160511_QHF_FH_JSI11i_3	82.36	61.421			0.88511	0.75016	44.744	3	3	Median	0.88511	0.75016	NaN	1	1	Median	0.55638	0.6682	NaN	1	1	Median	1.6206	1.5268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	135150000	58730000	76421000	34467000	15256000	19211000	42818000	20899000	21919000	57866000	22575000	35291000	0	0	0	12017	5013	11385	73711;73712;73713;73714	99668;99669;99670;99671	99668			4	
EIQSAFVSVLSENDELSQDVASK	1	Unmodified	2494.2075	0.20749276	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			94.783	94.436	3	1.0851E-09	85731	160511_QHF_FH_JSI10i_1	88.836	70.298			1.1597	1.1352	10.074	2	1	Median	1.4935	1.219	NaN	1	1	Median	0.90057	1.0571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53957000	22848000	31110000	16069000	6610300	9459000	37888000	16237000	21651000	0	0	0	0	0	0	12018	2997	11386	73715;73716	99672;99673	99672			1	
EIQSSNLETAMSVIGDR	0	Unmodified	1848.8887	0.88874158	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	78.572	77.751	2	1.6036E-32	68387	160511_QHF_FH_JSI11i_2	150.12	121.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12019	5093	11387	73717;73718;73719	99674;99675;99676	99676			3	
EIQSSNLETAMSVIGDRR	0	Unmodified	2004.9899	0.9898526	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		70.35	69.562	3	3.1846E-07	61412	160511_QHF_FH_JSI9i_2	101.15	73.652			1.1446	1.1196	22.349	4	3	Median	1.5346	1.2753	1.2774	2	1	Median	0.81242	0.99193	NaN	1	1	Median	0.87913	0.80303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	621990000	321170000	300830000	377730000	157360000	220370000	192570000	135880000	56692000	51693000	27928000	23765000	0	0	0	12020	5093	11388	73720;73721;73722;73723	99677;99678;99679;99680;99681	99680			5	
EIQTAVR	0	Unmodified	815.45012	0.45011648	1235;1902;2915	Q16778;P23527;P06899;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.83	4	4	1			3	3			4	3	4	4	15.481	11.338	2	3.3056E-05	8150	160513_QHF_FH_JSI11Kac_4	128.57	44.952			1.0297	1.0248	28.751	15	1	Median	1.274	1.0619	28.939	4	1	Linear	1.253	1.5929	3.7187	3	0	Plateau	0.99817	1.0182	14.013	4	0	Median	0.88985	0.9628	12.838	4	0	Median	6874000000	3321900000	3552100000	1410200000	696850000	713360000	1996700000	912500000	1084200000	1936400000	943710000	992690000	1530700000	768850000	761810000	12021	1235;1902;2915	11389	73724;73725;73726;73727;73728;73729;73730;73731;73732;73733;73734;73735;73736;73737;73738	99682;99683;99684;99685;99686;99687;99688;99689;99690;99691;99692;99693;99694;99695;99696;99697	99690			16	
EIQTLLSHK	1	Unmodified	1067.5975	0.597509	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	34.369	33.645	2;3	0.0002709	28388	160511_QHF_FH_JSI12i_3	96.331	60.451			1.3868	1.4552	286.1	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3868	1.4552	286.1	2	2	Median	28779000	12057000	16723000	0	0	0	0	0	0	0	0	0	28779000	12057000	16723000	12022	2081	11390	73739;73740	99698;99699	99699			2	
EIQTSAK	1	Unmodified	775.40758	0.40758296	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.17	4.41	4	1				1				1	1	1	3	6.6256	5.1142	2	0.0034484	3901	160511_QHF_FH_JSI11i_1	104.45	44.807			1.0512	1.0773	23.513	6	1	Median	1.0688	0.87369	NaN	1	0	Median	0.5972	0.70615	NaN	1	0	Median	1.0958	1.0668	NaN	1	0	Median	1.0227	1.0879	13.624	3	1	Plateau	3022400000	1469200000	1553200000	603270000	255810000	347460000	782460000	445620000	336840000	717280000	298920000	418360000	919360000	468810000	450550000	12023	2252	11391	73741;73742;73743;73744;73745;73746	99700;99701;99702;99703;99704;99705;99706	99700			7	
EIQTTTGNQQVLVR	0	Unmodified	1585.8424	0.84238373	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	39.404	36.841	2	1.1771E-14	33297	160511_QHF_FH_JSI11i_1	191.52	118.45			1.0524	0.99535	25.148	5	0	Median	1.0524	0.86068	NaN	1	0	Median	0.85798	0.99535	NaN	1	0	Median	1.2079	1.1798	42.172	2	0	Median	1.1098	1.1368	NaN	1	0	Median	404620000	204230000	200390000	90617000	40877000	49740000	98138000	54822000	43316000	127430000	68874000	58555000	88437000	39656000	48780000	12024	3700	11392	73747;73748;73749;73750;73751	99707;99708;99709;99710;99711;99712;99713;99714;99715;99716;99717	99708			11	
EIQVIPLQRDDED	0	Unmodified	1568.7682	0.76821574	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		61.68	61.266	2	0.0075278	55519	160511_QHF_FH_JSI10i_1	93.561	67.518			0.90761	0.97585	9.5862	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88347	1.0443	NaN	1	1	Median	0.93241	0.9119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189650000	89643000	100010000	0	0	0	93976000	45528000	48448000	95673000	44115000	51558000	0	0	0	12025	1317	11393	73752;73753	99718;99719	99719			2	
EIQVQHPAAK	1	Unmodified	1119.6037	0.60365701	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.06	3	8	7				4	7		7	6	9	7	16.556	12.828	2;3	5.0961E-11	11155	160511_QHF_FH_JSI9i_2	147.51	79.527			0.96759	1.0391	21.158	25	3	Median	1.2923	1.0709	13.946	5	1	Plateau	0.88232	1.0876	14.734	5	0	Median	0.99723	0.9781	33.064	8	2	Median	0.95521	1.0496	8.8393	7	0	Median	8250600000	4336300000	3914300000	1434700000	664480000	770200000	1497400000	834540000	662840000	3053500000	1609500000	1444000000	2265100000	1227800000	1037300000	12026	1655	11394	73754;73755;73756;73757;73758;73759;73760;73761;73762;73763;73764;73765;73766;73767;73768;73769;73770;73771;73772;73773;73774;73775;73776;73777;73778;73779;73780;73781;73782	99720;99721;99722;99723;99724;99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735;99736;99737;99738;99739;99740;99741;99742;99743;99744;99745;99746;99747;99748;99749;99750;99751;99752;99753;99754;99755;99756;99757;99758;99759;99760;99761;99762;99763;99764;99765	99745			46	
EIQWETR	0	Unmodified	960.46649	0.46649483	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		30.959	30.299	2	0.035554	26657	160511_QHF_FH_JSI10i_2	50.632	38.727			0.94504	1.0466	5.2292	2	2	Median	NaN	NaN	NaN	0	0	Median	0.83759	1.0086	NaN	1	1	Median	1.0663	1.086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101480000	50942000	50538000	0	0	0	25906000	13645000	12261000	75573000	37297000	38276000	0	0	0	12027	4248	11395	73783;73784	99766;99767	99767			2	
EIREDLPVNTSK	1	Unmodified	1399.7307	0.73070802	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.05		4	1				1	2		1	1	1	5	38.695	34.398	2;3	0.00014451	29322	160511_QHF_FH_JSI12i_2	60.401	46.722			1.0437	1.1216	23.556	8	1	Median	1.8732	1.5754	NaN	1	1	Median	1.0565	1.3127	NaN	1	0	Median	1.0956	1.1142	NaN	1	0	Median	0.97774	1.1109	25.999	5	0	Median	1151200000	603050000	548150000	3603600	1150200	2453400	288790000	171730000	117060000	292300000	138300000	154000000	566520000	291880000	274640000	12028	3323	11396	73785;73786;73787;73788;73789;73790;73791;73792	99768;99769;99770;99771;99772;99773;99774;99775;99776	99768			8	
EIRESTGAQVQVAGDMLPNSTER	0	Unmodified	2487.2024	0.20236458	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	1		By MS/MS			2	0		1									1			55.362	54.453	3	0.00031256	48127	160511_QHF_FH_JSI10i_2	46.839	38.449			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12029	2656;1893;2657	11397	73793	99777	99777			1	
EIRPALELLEPIEQK	1	Unmodified	1776.9986	0.99855002	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							4	3	5	3	83.858	83.439	2;3	5.5883E-07	74290	160511_QHF_FH_JSI11i_3	133.66	126.6			0.95046	0.98588	20.294	11	3	Median	1.2708	1.1059	10.917	2	1	Median	0.76529	0.93633	11.118	3	0	Plateau	1.0009	0.94314	29.738	4	2	Median	0.85105	0.85122	11.401	2	0	Median	3911500000	1895800000	2015700000	509250000	249560000	259690000	675220000	376430000	298790000	1763900000	815050000	948830000	963150000	454800000	508350000	12030	1702	11398	73794;73795;73796;73797;73798;73799;73800;73801;73802;73803;73804;73805;73806;73807;73808	99778;99779;99780;99781;99782;99783;99784;99785;99786;99787;99788;99789;99790;99791;99792;99793;99794;99795;99796;99797;99798;99799;99800;99801;99802;99803;99804;99805;99806;99807;99808;99809;99810;99811;99812;99813;99814;99815;99816	99784			39	
EISAQIR	0	Unmodified	815.45012	0.45011648	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	20.162	19.471	2	0.011012	16809	160511_QHF_FH_JSI10i_1	72.355	12.061			1.0142	1.0283	11.85	5	0	Median	1.3362	1.1377	NaN	1	0	Median	0.84043	1.0094	1.5241	2	0	Median	1.0142	1.0283	NaN	1	0	Median	1.2089	1.3282	NaN	1	0	Median	1041500000	547230000	494260000	209680000	95909000	113770000	339220000	196860000	142370000	311850000	159630000	152220000	180740000	94833000	85908000	12031	1004	11399	73809;73810;73811;73812;73813	99817;99818;99819	99817			3	
EISDAQWEDVVQK	1	Unmodified	1545.7311	0.73110195	2744	Q16626	MEA1	Male-enhanced antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			61.976	61.122	2	1.1675E-40	55272	160511_QHF_FH_JSI10i_1	197.56	154.82			0.97853	0.86348	11.377	3	2	Median	1.093	0.89259	15.86	2	2	Median	0.73647	0.86348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	395930000	200070000	195860000	260540000	122970000	137570000	135390000	77101000	58290000	0	0	0	0	0	0	12032	2744	11400	73814;73815;73816	99820;99821;99822	99820			3	
EISDGDVIISGNK	1	Unmodified	1345.6725	0.67252444	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	44.001	43.225	2	2.6887E-10	38942	160511_QHF_FH_JSI10i_1	147.28	98.997			0.78196	0.77365	54.506	5	2	Median	1.1191	0.91333	107.15	2	2	Median	0.62841	0.72876	NaN	1	0	Median	0.78196	0.77365	NaN	1	0	Median	0.79082	0.83192	NaN	1	0	Median	412750000	207870000	204880000	116910000	49102000	67804000	103050000	64487000	38558000	102050000	54406000	47642000	90750000	39873000	50878000	12033	774	11401	73817;73818;73819;73820;73821	99823;99824;99825;99826;99827;99828;99829;99830	99828			8	
EISEAFTSTGFDR	0	Unmodified	1458.6627	0.66268803	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.72	57.068	2	5.7763E-05	51937	160511_QHF_FH_JSI12i_1	108.35	54.666			0.79058	0.85635	20.208	4	0	Median	0.77834	0.644	NaN	1	0	Median	0.72273	0.84949	NaN	1	0	Median	1.0765	1.0529	NaN	1	0	Median	0.80302	0.86326	NaN	1	0	Median	162970000	87877000	75097000	33566000	20649000	12917000	46955000	23396000	23559000	45329000	22948000	22381000	37125000	20885000	16240000	12034	4519	11402	73822;73823;73824;73825	99831;99832;99833	99832			2	
EISEASENIYSDVR	0	Unmodified	1610.7424	0.74239491	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.134	47.715	2	3.4788E-06	42951	160511_QHF_FH_JSI10i_1	127.78	100.83			0.66935	0.71456	5.4708	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59317	0.68744	NaN	1	1	Median	0.75532	0.74274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	175980000	86004000	89974000	0	0	0	84345000	44052000	40294000	91632000	41952000	49680000	0	0	0	12035	3819	11403	73826;73827	99834;99835	99835			2	
EISEGDEVEVYSR	0	Unmodified	1510.6787	0.67873203	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	41.297	40.607	2	1.0197E-53	36435	160511_QHF_FH_JSI10i_1	224.42	211.3			1.0119	0.94254	9.6585	6	5	Median	1.0731	0.89328	4.2457	2	2	Median	0.85602	1.0396	NaN	1	0	Median	1.0264	1.0113	6.6137	2	2	Median	0.79121	0.83322	NaN	1	1	Median	1256500000	634520000	621970000	287730000	141740000	145990000	274200000	133300000	140900000	468140000	226720000	241420000	226420000	132760000	93664000	12036	1725	11404	73828;73829;73830;73831;73832;73833	99836;99837;99838;99839;99840;99841;99842	99840			7	
EISEITGGPINETLK	1	Unmodified	1599.8356	0.83556702	734	O95822	MLYCD	Malonyl-CoA decarboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.116	63.067	2	0.0037671	56041	160511_QHF_FH_JSI9i_1	55.98	30.543			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12037	734	11405	73834	99843	99843			1	
EISELNETFLSDSEK	1	Unmodified	1739.8101	0.81014013	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			68.796	68.512	2	0.016691	62068	160511_QHF_FH_JSI10i_1	50.95	1.0161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6577900	0	6577900	0	0	0	6577900	0	6577900	0	0	0	0	0	0	12038	3423	11406	73835	99844	99844			1	
EISESTPVEEVEALFK	1	Unmodified	1805.8935	0.89347583	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.7	101.63	2	3.5651E-07	92341	160511_QHF_FH_JSI11i_1	129.34	96.82			1.0838	1.0569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0838	1.0569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58176000	23755000	34421000	0	0	0	0	0	0	58176000	23755000	34421000	0	0	0	12039	3859	11407	73836	99845	99845			1	
EISEVFPDQFIHLGGDEVEFK	1	Unmodified	2434.1693	0.16925676	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.03	100.83	3	4.1693E-07	86769	160511_QHF_FH_JSI12i_2	99.185	84.571			1.8034	2.0601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8034	2.0601	NaN	1	1	Median	297070000	92478000	204590000	0	0	0	0	0	0	0	0	0	297070000	92478000	204590000	12040	874	11408	73837	99846	99846			1	
EISFAYEVLSNPEK	1	Unmodified	1624.7985	0.79845323	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	3	2	1	80.244	79.569	2;3	1.2028E-25	69924	160511_QHF_FH_JSI11i_2	231.92	195.58			0.33974	0.39616	113.25	6	6	Median	0.28411	0.24987	NaN	1	1	Median	0.51987	0.63499	114.9	3	3	Plateau	0.26275	0.26055	NaN	1	1	Median	0.35882	0.3973	NaN	1	1	Median	568630000	431160000	137470000	129460000	107520000	21937000	125010000	80417000	44589000	211210000	165840000	45372000	102950000	77383000	25571000	12041	456	11409	73838;73839;73840;73841;73842;73843;73844	99847;99848;99849;99850;99851;99852;99853	99851			7	
EISFDTMQQELQIGADDVEAFVIDAVR	0	Unmodified	3038.4543	0.45428175	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.94	97.218	3	1.0954E-33	57528	160513_QHF_FH_JSI10Kac_6	137.32	119.67			1.0097	1.2143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0097	1.2143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144950000	85337000	59612000	0	0	0	144950000	85337000	59612000	0	0	0	0	0	0	12042	3222	11410	73845	99854	99854			1	
EISGHTSGIK	1	Unmodified	1027.5298	0.52982336	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.82		11	5					4	2	7	6	6	3	11.095	8.0154	2;3	1.2464E-06	7337	160511_QHF_FH_JSI10i_2	96.015	48.817			0.68784	0.74776	97.993	20	16	Median	1.3587	1.1519	112.68	7	5	Median	0.40677	0.48286	121.86	5	4	Median	0.87587	0.89821	84.514	5	4	Median	0.55791	0.62252	72.549	3	3	Median	3374800000	1896300000	1478500000	734710000	412600000	322110000	851610000	516110000	335500000	965020000	536640000	428370000	823460000	430920000	392540000	12043	5595	11411	73846;73847;73848;73849;73850;73851;73852;73853;73854;73855;73856;73857;73858;73859;73860;73861;73862;73863;73864;73865;73866;73867	99855;99856;99857;99858;99859;99860;99861;99862;99863;99864;99865;99866;99867;99868;99869;99870;99871;99872;99873;99874;99875;99876;99877;99878;99879;99880;99881	99875			27	
EISGHTSGIKK	2	Unmodified	1155.6248	0.62478638	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	3.34		3	24						2	8	8	7	6	7.8013	6.9294	2;3;4	5.6426E-07	4647	160511_QHF_FH_JSI12i_3	180.09	149.52			1.2049	1.1467	126.66	26	25	Median	1.5528	1.4035	75.257	7	6	Median	0.80047	0.9128	114.65	6	6	Median	0.93495	0.93684	135.17	7	7	Median	0.83137	0.83637	193.75	6	6	Median	7308600000	3376000000	3932700000	1036700000	477390000	559280000	2002000000	904470000	1097500000	1864700000	1027900000	836720000	2405300000	966140000	1439100000	12044	5595	11412	73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878;73879;73880;73881;73882;73883;73884;73885;73886;73887;73888;73889;73890;73891;73892;73893;73894;73895;73896	99882;99883;99884;99885;99886;99887;99888;99889;99890;99891;99892;99893;99894;99895;99896;99897;99898;99899;99900;99901;99902;99903;99904;99905;99906;99907;99908;99909;99910	99905			29	
EISGLWNELDSLK	1	Unmodified	1502.7617	0.76167379	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	97.428	97.209	2	5.8797E-08	83660	160511_QHF_FH_JSI12i_2	189.13	125.57			0.89768	0.77864	40.357	7	6	Median	0.89768	0.77864	NaN	1	0	Median	0.70286	0.85798	62.607	2	2	Median	0.79088	0.78823	55.683	2	2	Median	0.8485	0.94675	48.236	2	2	Median	382340000	228810000	153520000	42619000	22374000	20245000	112300000	65836000	46464000	116810000	75567000	41245000	110600000	65036000	45568000	12045	3328	11413	73897;73898;73899;73900;73901;73902;73903	99911;99912;99913;99914;99915;99916;99917;99918;99919;99920	99913			10	
EISITHHVK	1	Unmodified	1062.5822	0.58219329	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	14.782	14.484	2;3	3.3972E-06	10908	160511_QHF_FH_JSI12i_3	136.75	91.035			0.94906	0.95892	21.694	6	1	Median	1.2985	1.0847	NaN	1	0	Median	1.1632	1.3315	NaN	1	0	Median	0.83663	0.80802	11.966	2	0	Median	0.90156	0.91573	18.764	2	1	Median	812380000	413010000	399360000	62761000	24925000	37836000	174970000	77281000	97688000	67345000	33792000	33553000	507300000	277010000	230290000	12046	2669	11414	73904;73905;73906;73907;73908;73909	99921;99922;99923;99924;99925	99925			5	
EISLLKELR	1	Acetyl (K)	1141.6707	0.67067394	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.288	71.75	2	0.034249	38027	160513_QHF_FH_JSI11Kac_5	47.198	16.943			0.16918	0.16634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16918	0.16634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14103000	12148000	1955300	0	0	0	0	0	0	14103000	12148000	1955300	0	0	0	12047	850	11415	73910	99926	99926			1	
EISLLNSIHENFSQAMASPAAR	0	Unmodified	2385.1747	0.17469326	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			91.011	89.959	3	2.9964E-07	75220	160511_QHF_FH_JSI10i_3	96.131	82.957			0.77999	0.9074	62.77	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77999	0.9074	62.77	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27809000	14900000	12909000	0	0	0	27809000	14900000	12909000	0	0	0	0	0	0	12048	2866	11416	73911;73912	99927;99928	99928			2	
EISLWFKPEELVDYK	2	Unmodified	1894.9717	0.97166657	1209	P22392	NME2	Nucleoside diphosphate kinase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		10	4						8	4	6	6	6	96.396	93.355	2;3	1.1444E-31	46887	160513_QHF_FH_JSI10Kac_6	214.23	168.98			0.98501	1.0535	23.844	21	8	Median	1.2369	1.0016	10.408	4	1	Linear	0.75232	0.89315	28.027	6	5	Median	1.1839	1.1153	22.568	5	0	Median	1.0188	1.0753	18.897	6	2	Median	3145600000	1633500000	1512100000	363890000	205920000	157980000	622510000	351480000	271020000	994980000	485090000	509880000	1164200000	591040000	573170000	12049	1209	11417	73913;73914;73915;73916;73917;73918;73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934	99929;99930;99931;99932;99933;99934;99935;99936;99937;99938;99939;99940;99941;99942;99943;99944;99945;99946;99947;99948;99949;99950;99951;99952;99953;99954;99955;99956;99957;99958	99958			30	
EISNLNQLIEEFKK	2	Unmodified	1703.9094	0.90940066	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	93.179	92.842	3	1.5785E-40	82611	160511_QHF_FH_JSI11i_3	181.26	144.97			0.77266	0.82697	58.364	6	2	Median	0.83925	0.71415	NaN	1	0	Median	0.868	1.0465	33.857	2	1	Median	0.46162	0.44216	90.248	2	1	Median	0.71136	0.83029	NaN	1	0	Median	270950000	126180000	144760000	21629000	11369000	10259000	46565000	22728000	23837000	130280000	50184000	80094000	72474000	41903000	30572000	12050	2574	11418	73935;73936;73937;73938;73939;73940	99959;99960;99961;99962;99963;99964;99965;99966	99960			8	
EISNSDGTRPVGMLGK	1	Unmodified	1659.825	0.82501911	5060	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	4	3	2	37.339	36.585	2;3	1.6801E-05	32067	160511_QHF_FH_JSI11i_3	79.022	61.321			0.84021	0.7978	38.112	10	3	Median	0.89717	0.7709	21.368	2	0	Median	0.46356	0.56623	52.224	4	3	Median	0.93647	0.88101	12.664	3	0	Median	0.94913	0.97556	NaN	1	0	Median	751270000	410410000	340860000	110720000	53238000	57481000	193200000	117910000	75288000	304270000	164850000	139420000	143090000	74412000	68676000	12051	5060	11419	73941;73942;73943;73944;73945;73946;73947;73948;73949;73950;73951	99967;99968;99969;99970;99971;99972;99973;99974;99975;99976;99977;99978;99979;99980;99981	99969			15	
EISPGSGPGEIR	0	Unmodified	1197.599	0.59896556	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	29.328	28.911	2	0.0004764	25743	160511_QHF_FH_JSI11i_1	86.18	52.384			0.77293	0.85645	19.073	4	4	Median	NaN	NaN	NaN	0	0	Median	0.75275	0.87629	NaN	1	1	Median	1.0894	1.0481	NaN	1	1	Median	0.70645	0.74307	16.843	2	2	Median	149900000	79577000	70321000	0	0	0	39642000	22850000	16792000	36398000	17812000	18586000	73858000	38915000	34943000	12052	339	11420	73952;73953;73954;73955;73956	99982;99983;99984;99985;99986	99982			5	
EISSAAAHSQPFAWK	1	Unmodified	1628.7947	0.79470526	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	48.162	48.002	2;3	5.4604E-27	42505	160511_QHF_FH_JSI11i_3	147.24	117.5			1.0807	1.1165	13.821	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98358	0.90523	NaN	1	0	Median	1.1197	1.1453	3.6097	2	1	Median	327540000	164770000	162770000	0	0	0	0	0	0	137580000	70051000	67533000	189960000	94724000	95233000	12053	1892	11421	73957;73958;73959;73960	99987;99988;99989;99990;99991	99988			5	
EISSAAAHSQPFAWKK	2	Acetyl (K)	1798.9002	0.90023296	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.858	52.15	3	0.00060276	28260	160513_QHF_FH_JSI11Kac_6	121.92	88.719			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6280800	6280800	0	0	0	0	0	0	0	6280800	6280800	0	0	0	0	12054	1892	11422	73961	99992	99992	1895		1	
EISSVPCWQFISWISHMVALLDK	1	Unmodified	2745.3659	0.36586485	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			102.92	95.459	3;4	4.968E-107	57403	160513_QHF_FH_JSI10Kac_6	233.26	219.37			1.0012	1.1705	16.985	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0012	1.1705	16.985	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2528700000	1186400000	1342400000	332310000	144940000	187370000	2196400000	1041400000	1155000000	0	0	0	0	0	0	12055	2094	11423	73962;73963;73964;73965	99993;99994;99995;99996;99997;99998	99995			6	
EISTPTHWSK	1	Unmodified	1184.5826	0.58258722	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	28.3	28.278	3	5.5369E-06	23681	160511_QHF_FH_JSI12i_3	83.081	68.783			1.08	1.0711	8.678	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1836	1.1389	NaN	1	0	Median	0.98549	1.0074	NaN	1	0	Median	461750000	225920000	235830000	0	0	0	0	0	0	169800000	86679000	83123000	291950000	139240000	152710000	12056	3438	11424	73966;73967	99999	99999			1	
EISVNDLNESSIPR	0	Unmodified	1571.7791	0.77911477	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		60.718	60.306	2	0.00010813	54637	160511_QHF_FH_JSI11i_1	107.03	72.334			0.77618	0.82194	5.4697	2	1	Median	NaN	NaN	NaN	0	0	Median	0.66669	0.79076	NaN	1	1	Median	0.90366	0.85436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148920000	89178000	59740000	0	0	0	82797000	51050000	31747000	66121000	38128000	27993000	0	0	0	12057	3668	11425	73968;73969	100000;100001	100000			2	
EISYAIK	1	Unmodified	822.44872	0.4487195	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.467	31.863	2	0.011062	28374	160511_QHF_FH_JSI10i_1	72.138	16.697			0.81086	0.86415	41.746	4	2	Median	0.7901	0.6573	NaN	1	1	Median	0.83217	0.97244	NaN	1	0	Median	1.7555	1.7042	NaN	1	1	Median	0.7468	0.76792	NaN	1	0	Median	459790000	230690000	229110000	85637000	39240000	46397000	147810000	76717000	71098000	124660000	58507000	66152000	101680000	56222000	45459000	12058	1711	11426	73970;73971;73972;73973	100002;100003;100004;100005;100006	100005			5	
EISYAIKNIHGVR	1	Acetyl (K)	1540.8362	0.83617614	1711	P50570	DNM2	Dynamin-2	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		63.001	53.303	2;3	3.8665E-09	28875	160513_QHF_FH_JSI11Kac_6	151.15	113.06			0.24516	0.23941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24516	0.23941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27022000	23354000	3668100	0	0	0	0	0	0	27022000	23354000	3668100	0	0	0	12059	1711	11427	73974;73975	100007;100008	100008	1723		2	
EISYENTQISR	0	Unmodified	1338.6416	0.64155866	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				34.255	33	2	0.029485	28885	160511_QHF_FH_JSI9i_1	47.561	10.868			0.51624	0.42044	NaN	1	1	Median	0.51624	0.42044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	280790000	179850000	100940000	280790000	179850000	100940000	0	0	0	0	0	0	0	0	0	12060	5135	11428	73976	100009	100009			1	
EITAIESSVPCQLLESVLQELK	1	Unmodified	2485.2986	0.29855637	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.55	103.45	3	3.5519E-07	91205	160511_QHF_FH_JSI11i_2	80.303	66.471			1.0954	1.1223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0954	1.1223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57795000	33650000	24145000	0	0	0	0	0	0	57795000	33650000	24145000	0	0	0	12061	558	11429	73977	100010	100010			1	
EITALAPSTMK	1	Unmodified	1160.6111	0.61111015	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.28	10	5	4		1	4	3	3	3	9	7	8	9	50.023	44.965	2	6.1562E-38	40820	160511_QHF_FH_JSI10i_2	205.09	140.26			1.0253	0.99495	52.964	32	13	Median	1.2317	1.0188	68.49	8	4	Median	0.77273	0.88901	48.522	7	3	Median	1.0296	1.0269	41.757	8	2	Median	0.88408	0.96745	55.967	9	4	Median	172060000000	77870000000	94185000000	39425000000	15580000000	23845000000	46303000000	19381000000	26922000000	46656000000	23516000000	23140000000	39672000000	19394000000	20278000000	12062	1916;2015;2062;2070	11430	73978;73979;73980;73981;73982;73983;73984;73985;73986;73987;73988;73989;73990;73991;73992;73993;73994;73995;73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006;74007;74008;74009;74010	100011;100012;100013;100014;100015;100016;100017;100018;100019;100020;100021;100022;100023;100024;100025;100026;100027;100028;100029;100030;100031;100032;100033;100034;100035;100036;100037;100038;100039;100040;100041;100042;100043;100044;100045;100046;100047;100048;100049;100050;100051;100052;100053;100054;100055;100056;100057;100058;100059;100060;100061;100062;100063;100064;100065;100066;100067;100068;100069;100070;100071	100066			61	
EITALAPSTMK	1	Oxidation (M)	1176.606	0.60602477	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.63	7	4	4	1	3	5	19	4	2	9	8	18	14	42.432	35.545	2;3	3.7106E-30	6677	160513_QHF_FH_JSI9Kac_3	177.06	107.24			0.98222	0.96313	38.902	39	9	Median	1.1479	0.97057	46.537	7	1	Median	0.75732	0.90649	20.468	8	1	Median	0.97038	0.96042	15.92	14	4	Median	1.0358	1.1181	57.448	10	3	Median	15957000000	7320500000	8636400000	4006200000	1636500000	2369700000	4216900000	2176900000	2040000000	3887100000	1791100000	2096000000	3846700000	1715900000	2130700000	12063	1916;2015;2062;2070	11430	74011;74012;74013;74014;74015;74016;74017;74018;74019;74020;74021;74022;74023;74024;74025;74026;74027;74028;74029;74030;74031;74032;74033;74034;74035;74036;74037;74038;74039;74040;74041;74042;74043;74044;74045;74046;74047;74048;74049;74050;74051;74052;74053;74054;74055;74056;74057;74058;74059	100072;100073;100074;100075;100076;100077;100078;100079;100080;100081;100082;100083;100084;100085;100086;100087;100088;100089;100090;100091;100092;100093;100094;100095;100096;100097;100098;100099;100100;100101;100102;100103;100104;100105;100106;100107;100108;100109;100110;100111;100112;100113;100114;100115;100116;100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128;100129;100130;100131;100132;100133;100134;100135;100136;100137;100138;100139;100140;100141;100142;100143;100144;100145;100146;100147;100148;100149;100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160;100161;100162;100163;100164;100165;100166;100167;100168	100124		1577	97	
EITALAPSTMKIK	2	Acetyl (K);Oxidation (M)	1459.7956	0.79561646	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	65.086	54.872	2	0.00055645	30022	160513_QHF_FH_JSI12Kac_4	80.763	64.131			0.96457	1.0459	6.1169	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96457	1.0459	6.1169	2	0	Median	6982200	2478900	4503300	0	0	0	1804200	0	1804200	0	0	0	5178000	2478900	2699100	12064	1916;2015;2062;2070	11431	74060;74061;74062;74063	100169;100170;100171;100172	100172	1914;1915	1577	4	
EITALAPSTMKIK	2	Acetyl (K)	1443.8007	0.80070184	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	1		By matching	By MS/MS	By MS/MS	14	0							4				1	1	2	75.775	65.147	2;3	6.2156E-05	34915	160513_QHF_FH_JSI12Kac_4	93.258	68.876			0.59776	0.61456	65.694	4	0	Median	NaN	NaN	NaN	0	0	Median	0.79468	0.9274	NaN	1	0	Median	0.5781	0.56312	NaN	1	0	Median	0.34144	0.36856	84.67	2	0	Median	33210000	21803000	11406000	0	0	0	11281000	6254300	5026500	10867000	7715900	3151600	11061000	7833200	3228100	12065	1916;2015;2062;2070	11431	74064;74065;74066;74067	100173;100174;100175;100176	100175	1914;1915		4	
EITALAPSTMKIK	2	Unmodified	1401.7901	0.79013715	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	1				By MS/MS	3	0			2										2	53.848	53.61	2;3	0.00076766	46050	160511_QHF_FH_JSI12i_3	68.044	49.855			0.75985	0.77766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75985	0.77766	NaN	1	1	Median	112530000	44686000	67844000	0	0	0	0	0	0	0	0	0	112530000	44686000	67844000	12066	1916;2015;2062;2070	11431	74068;74069	100177;100178	100178			2	
EITEGDEVEVYSR	0	Unmodified	1524.6944	0.69438209	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.571	41.917	2	3.3564E-22	37845	160511_QHF_FH_JSI11i_1	176.42	140			0.92161	0.95008	5.424	4	0	Median	1.1398	0.93249	NaN	1	0	Median	0.81593	0.97584	NaN	1	0	Median	0.90817	0.86651	NaN	1	0	Median	0.93524	0.96801	NaN	1	0	Median	244540000	128580000	115960000	54745000	22655000	32090000	54593000	31299000	23294000	62194000	34066000	28129000	73004000	40557000	32447000	12067	1726	11432	74070;74071;74072;74073	100179;100180;100181;100182;100183;100184;100185;100186;100187	100180			9	
EITFENGEELTEEGLPFLILFHMK	1	Unmodified	2835.4041	0.40408408	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	98.693	90.863	3	3.2974E-60	54330	160513_QHF_FH_JSI10Kac_6	236.04	221.97			0.73655	0.82589	8.3078	5	4	Median	0.91167	0.77823	8.4056	2	2	Median	0.73573	0.86902	0.33161	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71448	0.74247	NaN	1	0	Median	1329600000	677910000	651720000	455090000	210340000	244750000	759910000	407490000	352430000	0	0	0	114630000	60088000	54546000	12068	4390	11433	74074;74075;74076;74077;74078	100188;100189;100190;100191;100192	100192			5	
EITGIGPSTTTETETIAK	1	Unmodified	1847.9364	0.93640328	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.968	54.308	2	2.3005E-81	48157	160511_QHF_FH_JSI9i_1	244.58	215.87			1.0469	0.96388	10.55	4	0	Median	1.1535	0.94869	NaN	1	0	Median	0.73844	0.87155	NaN	1	0	Median	1.0122	0.97932	NaN	1	0	Median	1.0827	1.1233	NaN	1	0	Median	2033400000	1132900000	900450000	463510000	267290000	196220000	518440000	321900000	196550000	523530000	274260000	249270000	527900000	269480000	258420000	12069	525	11434	74079;74080;74081;74082	100193;100194;100195;100196;100197;100198;100199;100200;100201;100202;100203;100204;100205;100206	100205			14	
EITIHTK	1	Unmodified	840.47052	0.47051757	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.75	5.93		2	1						1		1	2	1	16.041	12.487	2;3	0.0060112	11017	160511_QHF_FH_JSI10i_2	94.662	46.489			1.6409	1.6479	111.89	3	3	Median	NaN	NaN	NaN	0	0	Median	0.32127	0.40331	NaN	1	1	Median	1.6409	1.6479	NaN	1	1	Median	3.2807	3.6783	NaN	1	1	Median	252670000	104890000	147780000	0	0	0	97016000	72457000	24559000	7687600	1263900	6423700	147970000	31166000	116800000	12070	155	11435	74083;74084;74085;74086	100207;100208;100209;100210	100210			4	
EITSLHER	0	Unmodified	983.50361	0.50360861	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.27		5	3					1	1	2	1	5	2	13.16	11.059	2;3	0.00027106	8873	160511_QHF_FH_JSI12i_3	85.676	66.581			1.1948	1.2026	26.341	10	2	Median	1.1959	1.0183	29.511	2	0	Median	0.64103	0.78981	NaN	1	0	Median	1.2631	1.259	10.496	5	2	Median	1.2285	1.3111	50.901	2	0	Median	1325000000	624300000	700690000	134700000	57915000	76782000	187260000	97107000	90156000	627460000	281130000	346320000	375570000	188140000	187430000	12071	1016	11436	74087;74088;74089;74090;74091;74092;74093;74094;74095;74096	100211;100212;100213;100214;100215;100216;100217;100218;100219;100220	100219			10	
EITTEGQVQVLK	1	Unmodified	1343.7296	0.72964538	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.2	44.71	2	1.0282E-07	40733	160511_QHF_FH_JSI12i_1	136.96	108.16			0.69079	0.73907	68.514	3	2	Median	NaN	NaN	NaN	0	0	Median	0.42891	0.49856	NaN	1	1	Median	1.9647	1.8917	NaN	1	1	Median	0.69079	0.73907	NaN	1	0	Median	126380000	68060000	58317000	0	0	0	48720000	34698000	14022000	33365000	7905700	25459000	44292000	25456000	18836000	12072	5323	11437	74097;74098;74099	100221;100222;100223;100224	100223			4	
EITYMHSEGILAGELK	1	Unmodified	1789.892	0.89203604	2242;608	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	68.514	67.678	2;3	3.3211E-16	59967	160511_QHF_FH_JSI10i_2	146.3	131.6			0.88866	1.0477	26.728	5	1	Linear	1.2307	1.0477	NaN	1	0	Median	0.71381	0.89699	NaN	1	0	Median	1.3288	1.3361	40.966	2	1	Median	1.0959	1.2096	NaN	1	0	Median	997510000	477300000	520210000	169710000	64684000	105030000	301250000	180380000	120870000	306460000	153060000	153400000	220090000	79183000	140910000	12073	2242;608	11438	74100;74101;74102;74103;74104	100225;100226;100227;100228;100229;100230;100231	100230			7	
EIVAEAERLDVK	1	Unmodified	1370.7405	0.74054442	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		3									1	2		45.425	44.774	2	0.0039489	38562	160511_QHF_FH_JSI11i_2	94.767	65.809			0.72843	1.6545	43.803	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.69408	0.83976	NaN	1	1	Median	1.0748	1.0984	57.939	2	2	Median	NaN	NaN	NaN	0	0	Median	216250000	112920000	103330000	0	0	0	65313000	39258000	26055000	150940000	73664000	77275000	0	0	0	12074	1839	11439	74105;74106;74107	100232;100233;100234;100235	100233			4	
EIVDSYLPVILDIIK	1	Unmodified	1728.9913	0.99133938	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							3	5	5	3	102.99	102.91	2;3	1.7039E-98	90743	160511_QHF_FH_JSI9i_2	265.72	225.81			0.94433	1.0073	8.9572	16	1	Median	1.1929	1.0239	8.588	3	0	Plateau	0.88655	1.0619	10.429	5	0	Median	0.9612	0.95833	6.1346	5	1	Median	0.93726	1.0387	3.3318	3	0	Plateau	4870300000	2455300000	2415000000	736040000	316670000	419370000	1222600000	622740000	599840000	1567200000	822680000	744540000	1344400000	693210000	651220000	12075	873	11440	74108;74109;74110;74111;74112;74113;74114;74115;74116;74117;74118;74119;74120;74121;74122;74123	100236;100237;100238;100239;100240;100241;100242;100243;100244;100245;100246;100247;100248;100249;100250;100251;100252;100253;100254;100255;100256;100257;100258;100259;100260;100261;100262;100263	100251			28	
EIVEMNEIEEGK	1	Unmodified	1418.6599	0.65991084	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	52.141	51.383	2	2.4449E-06	45685	160511_QHF_FH_JSI9i_1	121.29	87.909			1.7296	1.4214	27.539	3	3	Median	1.7296	1.4214	NaN	1	1	Median	1.2038	1.3968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1439	2.2697	NaN	1	1	Median	348560000	139170000	209390000	93016000	36988000	56028000	150510000	68286000	82229000	0	0	0	105030000	33897000	71132000	12076	4673	11441	74124;74125;74126	100264;100265;100266	100266			3	
EIVESCDLK	1	Unmodified	1091.5169	0.51687542	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	28.805	28.364	2	0.00023439	25113	160511_QHF_FH_JSI10i_1	99.442	45.474			0.51943	0.57104	39.787	2	1	Median	NaN	NaN	NaN	0	0	Median	0.36264	0.431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74399	0.75657	NaN	1	0	Median	261420000	186440000	74981000	0	0	0	179250000	141980000	37273000	0	0	0	82173000	44465000	37708000	12077	636	11442	74127;74128	100267;100268;100269	100269			3	
EIVETFANK	1	Unmodified	1049.5393	0.53932542	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.613	36.918	2	0.0011096	33556	160511_QHF_FH_JSI12i_1	80.438	40.17			0.80498	0.65839	33.293	3	3	Median	0.80498	0.65839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1221	1.0827	NaN	1	1	Median	0.55102	0.57543	NaN	1	1	Median	469900000	259820000	210080000	91357000	51929000	39428000	0	0	0	213560000	121210000	92349000	164980000	86678000	78306000	12078	1685	11443	74129;74130;74131	100270;100271;100272	100271			3	
EIVEVKEENIEDATEK	2	Unmodified	1873.9157	0.91566783	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	3	2	46.608	45.996	2;3	1.1098E-15	41369	160511_QHF_FH_JSI10i_1	128.31	104.33			0.92731	1.0124	26.413	7	1	Median	1.5163	1.2301	NaN	1	0	Median	0.86975	1.0124	NaN	1	0	Median	1.061	1.0302	33.367	3	1	Plateau	0.99171	1.0314	5.6269	2	0	Median	556760000	277810000	278950000	82465000	33584000	48881000	138590000	56557000	82033000	197820000	117850000	79969000	137890000	69816000	68070000	12079	2116	11444	74132;74133;74134;74135;74136;74137;74138;74139	100273;100274;100275;100276;100277;100278;100279	100278			7	
EIVHIQAGQCGNQIGTK	1	Unmodified	1851.9261	0.92613014	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	3.76		4	5					1		1	2	3	4	38.881	37.115	2;3	2.0094E-16	31576	160511_QHF_FH_JSI12i_3	120.14	64.71			0.74843	0.70324	22.359	8	2	Median	0.9827	0.85788	NaN	1	0	Median	0.62244	0.73338	34.47	2	1	Median	0.73784	0.70318	21.032	3	1	Median	0.74898	0.76872	20.178	2	0	Median	642410000	340240000	302180000	35894000	18372000	17522000	57784000	34117000	23667000	313380000	168790000	144600000	235350000	118960000	116390000	12080	4440	11445	74140;74141;74142;74143;74144;74145;74146;74147;74148;74149	100280;100281;100282;100283;100284;100285;100286;100287;100288;100289;100290;100291;100292;100293	100293			14	
EIVHLQAGQCGNQIGAK	1	Unmodified	1821.9156	0.91556545	2075;811	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	5.99	1	17	14				1	7	6	9	10	16	11	41.052	37.42	2;3	4.7476E-66	33234	160511_QHF_FH_JSI11i_3	227.67	0			0.87483	0.9132	26.145	41	4	Median	1.0499	0.9132	19.312	9	4	Median	0.85466	1.0189	17.771	9	0	Median	0.75345	0.70213	21.726	13	0	Median	1.0282	1.126	24.31	10	0	Median	15317000000	7527800000	7788900000	863450000	399350000	464110000	1987600000	991600000	995980000	7215900000	3681500000	3534400000	5249800000	2455400000	2794400000	12081	2075;811	11446	74150;74151;74152;74153;74154;74155;74156;74157;74158;74159;74160;74161;74162;74163;74164;74165;74166;74167;74168;74169;74170;74171;74172;74173;74174;74175;74176;74177;74178;74179;74180;74181;74182;74183;74184;74185;74186;74187;74188;74189;74190;74191;74192;74193;74194;74195	100294;100295;100296;100297;100298;100299;100300;100301;100302;100303;100304;100305;100306;100307;100308;100309;100310;100311;100312;100313;100314;100315;100316;100317;100318;100319;100320;100321;100322;100323;100324;100325;100326;100327;100328;100329;100330;100331;100332;100333;100334;100335;100336;100337;100338;100339;100340;100341;100342;100343;100344;100345;100346;100347;100348;100349;100350;100351;100352;100353;100354;100355;100356;100357;100358;100359;100360;100361;100362;100363;100364;100365;100366;100367;100368;100369;100370;100371;100372;100373	100303			80	
EIVHTFK	1	Unmodified	872.4756	0.47560295	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		18.908	18.908	3	0.045541	15851	160511_QHF_FH_JSI11i_3	28.174	15.647			1.0312	0.9863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0312	0.9863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18493000	9565300	8927200	0	0	0	0	0	0	18493000	9565300	8927200	0	0	0	12082	3676	11447	74196	100374	100374			1	
EIVLADVIDNDSWR	0	Unmodified	1643.8155	0.81550028	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.695	7	15	7							6	7	8	8	94.533	94.159	2;3	4.5576E-30	83293	160511_QHF_FH_JSI10i_2	219.29	172.4			0.99983	1.0933	27.883	22	9	Median	1.3215	1.1527	24.588	6	3	Median	0.89268	1.0617	36.075	5	2	Median	1.0972	1.0526	9.2931	6	2	Median	0.99332	1.109	39.228	5	2	Median	1258200000	591220000	666940000	157610000	66099000	91507000	344410000	166230000	178190000	504200000	231050000	273150000	251940000	127850000	124090000	12083	1206	11448	74197;74198;74199;74200;74201;74202;74203;74204;74205;74206;74207;74208;74209;74210;74211;74212;74213;74214;74215;74216;74217;74218;74219;74220;74221;74222;74223;74224;74225	100375;100376;100377;100378;100379;100380;100381;100382;100383;100384;100385;100386;100387;100388;100389;100390;100391;100392;100393;100394;100395;100396;100397;100398;100399;100400;100401;100402;100403;100404;100405;100406;100407;100408;100409;100410;100411;100412;100413;100414;100415;100416;100417;100418;100419;100420;100421;100422;100423	100417			49	
EIVPLFR	0	Unmodified	872.51199	0.51198846	5003	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			64.781	63.938	2	0.045601	56610	160511_QHF_FH_JSI10i_2	44.611	19.612			1.1028	1.3617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1028	1.3617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19116000	7737700	11379000	0	0	0	19116000	7737700	11379000	0	0	0	0	0	0	12084	5003	11449	74226	100424	100424			1	
EIVPVLVSTR	0	Unmodified	1111.6601	0.66010926	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.37	2	4					4	4		2	4	5	3	67.068	60.622	2	0.00021819	52483	160511_QHF_FH_JSI11i_2	81.338	55.601			0.94058	0.99476	23.789	14	0	Median	1.3796	1.1866	19.199	2	0	Median	0.81785	0.9846	13.737	4	0	Median	0.98063	0.96383	34.156	5	0	Median	0.96496	1.0896	14.358	3	0	Plateau	801520000	396340000	405180000	131710000	54964000	76749000	191810000	102420000	89398000	315270000	156930000	158340000	162720000	82031000	80691000	12085	4496	11450	74227;74228;74229;74230;74231;74232;74233;74234;74235;74236;74237;74238;74239;74240	100425;100426;100427;100428;100429;100430;100431;100432;100433;100434;100435;100436;100437;100438;100439;100440;100441;100442;100443;100444;100445;100446;100447;100448;100449	100438			25	
EIVPVLVSTRK	1	Unmodified	1239.7551	0.75507227	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.83	0.373		1	5							4	2			49.763	48.283	2;3	0.00019561	39546	160511_QHF_FH_JSI9i_3	74.611	58.721			0.45713	0.50241	88.683	5	4	Median	0.75878	0.61661	118.17	3	2	Median	0.43935	0.49733	1.4366	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	653580000	411670000	241920000	547550000	328300000	219260000	106030000	83372000	22657000	0	0	0	0	0	0	12086	4496	11451	74241;74242;74243;74244;74245;74246	100450;100451;100452;100453;100454;100455;100456	100455			7	
EIVQQLIDEYHAATRPDYISWGTQEQ	0	Unmodified	3089.473	0.47304335	1223	P23258	TUBG1	Tubulin gamma-1 chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	100.65	100.66	3	3.4532E-58	89693	160511_QHF_FH_JSI11i_3	201.32	195.89			0.79325	0.77471	5.3486	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78004	0.74596	NaN	1	0	Median	0.80668	0.80458	NaN	1	1	Median	134700000	77967000	56730000	0	0	0	0	0	0	81021000	43247000	37774000	53676000	34720000	18956000	12087	1223	11452	74247;74248	100457;100458;100459	100458			3	
EIVRDIKEK	2	Acetyl (K)	1170.6608	0.66083754	2062;1916;2070;2015	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P62736;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	2		By MS/MS			15	0								1			1			36.944	27.32	3	0.026333	14539	160513_QHF_FH_JSI10Kac_5	47.228	29.419			1.2719	1.5057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2719	1.5057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14394000	5583700	8810000	0	0	0	14394000	5583700	8810000	0	0	0	0	0	0	12088	1916;2015;2062;2070	11453	74249	100460	100460	1916		1	
EIVSDVIDGNEQLSVVR	0	Unmodified	1870.9636	0.96362108	2808	Q32P44	EML3	Echinoderm microtubule-associated protein-like 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.608	75.435	2	0.00025275	68402	160511_QHF_FH_JSI10i_1	71.548	52.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12089	2808	11454	74250	100461	100461			1	
EIVSGLLAAVSSSK	1	Unmodified	1359.7609	0.76094551	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		83.808	73.282	2	0.051525	38708	160513_QHF_FH_JSI11Kac_5	41.283	22.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12090	1305	11455	74251	100462	100462			1	
EIVSGMK	1	Unmodified	762.39458	0.39457544	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.21	4	2	1				2			4	2	2	1	19.355	16.846	2	0.0055815	10850	160513_QHF_FH_JSI11Kac_4	94.262	29.485			1.0016	1.0564	69.897	9	4	Median	2.1477	1.8026	61.883	4	3	Median	0.62601	0.73631	51.052	2	1	Median	0.54587	0.54313	83.987	2	0	Median	1.0016	1.0654	NaN	1	0	Median	3861400000	1988500000	1872900000	1675500000	698190000	977310000	753510000	512190000	241320000	544850000	373520000	171330000	887530000	404600000	482930000	12091	1773	11456	74252;74253;74254;74255;74256;74257;74258;74259;74260	100463;100464;100465;100466;100467;100468;100469;100470;100471;100472	100468			10	
EIVSGMKYIQHTYR	1	Acetyl (K);Oxidation (M)	1781.8771	0.87705468	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		50.66	40.948	3	0.036488	22232	160513_QHF_FH_JSI11Kac_6	32.925	21.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12092	1773	11457	74261	100473	100473			1	
EIVTNFLAGFEA	0	Unmodified	1309.6554	0.65541781	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	101.99	101.88	2	1.1434E-10	92475	160511_QHF_FH_JSI12i_1	143.7	135.78			0.87398	0.96633	12.71	8	2	Median	1.3305	1.1105	8.4303	2	1	Median	0.83039	1.0081	3.9958	2	0	Median	0.87264	0.86418	4.1352	2	1	Median	0.82039	0.87295	12.38	2	0	Median	3081600000	1549300000	1532300000	742640000	296850000	445800000	962000000	528360000	433640000	747320000	394290000	353030000	629670000	329840000	299830000	12093	1263	11458	74262;74263;74264;74265;74266;74267;74268;74269	100474;100475;100476;100477;100478;100479;100480;100481;100482;100483	100476			10	
EIVTYTK	1	Unmodified	852.45928	0.45928418	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.967	20.783	2	0.0099224	17561	160511_QHF_FH_JSI9i_1	77.058	60.503			2.04	1.6832	NaN	1	0	Median	2.04	1.6832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155910000	51111000	104790000	155910000	51111000	104790000	0	0	0	0	0	0	0	0	0	12094	2400	11459	74270	100484	100484			1	
EIVVGSNMDK	1	Unmodified	1090.5329	0.53285983	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0				By MS/MS	1	0	1												1	30.793	30.225	2	0.049513	27174	160511_QHF_FH_JSI12i_1	43.282	9.0958			2.4826	2.5681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4826	2.5681	NaN	1	1	Median	53808000	12544000	41264000	0	0	0	0	0	0	0	0	0	53808000	12544000	41264000	12095	1187	11460	74271	100485	100485			1	
EIVVIHQDPEALK	1	Unmodified	1489.814	0.81404372	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.87	3	9					2	3		3	6	3	5	52.266	48.522	2;3	1.4248E-10	41755	160511_QHF_FH_JSI11i_2	151.1	123.35			0.91307	0.97916	19.056	17	5	Median	1.0431	0.85573	12.152	3	0	Median	0.86819	1.0455	19.789	6	2	Median	0.97488	0.99252	14.581	3	1	Median	0.91307	0.93912	22.33	5	2	Median	3882200000	1811600000	2070600000	508930000	181060000	327870000	1320100000	664370000	655760000	1294900000	596970000	697890000	758300000	369220000	389080000	12096	1520	11461	74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285;74286;74287;74288	100486;100487;100488;100489;100490;100491;100492;100493;100494;100495;100496;100497;100498;100499;100500;100501;100502;100503;100504;100505;100506;100507;100508;100509;100510;100511	100500			26	
EIVVLETLEDIDK	1	Unmodified	1514.808	0.80795528	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.75	5	5	5						4	5	6	4	4	99.093	97.569	2;3	3.5343E-99	91438	160511_QHF_FH_JSI11i_1	260.59	222.3			1.1533	1.1941	46.645	17	9	Median	1.2438	1.0462	9.3663	3	1	Median	0.99736	1.1744	55.668	6	5	Median	1.4695	1.4295	50.452	4	2	Median	1.3266	1.449	43.257	4	1	Median	5786500000	2469200000	3317300000	778220000	316800000	461420000	1886100000	820960000	1065200000	1552000000	589740000	962260000	1570100000	741720000	828420000	12097	2652	11462	74289;74290;74291;74292;74293;74294;74295;74296;74297;74298;74299;74300;74301;74302;74303;74304;74305;74306;74307	100512;100513;100514;100515;100516;100517;100518;100519;100520;100521;100522;100523;100524;100525;100526;100527;100528;100529;100530;100531;100532;100533;100534;100535;100536	100513			25	
EIVVTDYSDQNLQELEK	1	Unmodified	2021.9793	0.97933072	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	71.273	70.741	2;3	1.2194E-209	64512	160511_QHF_FH_JSI12i_1	403.34	373.79			0.949	0.90784	22.882	8	0	Median	0.85888	0.70785	17.871	2	0	Median	0.89489	1.0375	25.177	2	0	Median	0.91743	0.89584	10.017	2	0	Median	1.06	1.0879	19.29	2	0	Median	1011100000	530120000	481000000	202080000	113820000	88262000	326200000	186950000	139250000	241660000	119890000	121770000	241180000	109460000	131720000	12098	1495	11463	74308;74309;74310;74311;74312;74313;74314;74315	100537;100538;100539;100540;100541;100542;100543;100544;100545	100539			9	
EIVWLER	0	Unmodified	943.51272	0.51271674	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.607	59.69	2	0.0017464	52927	160511_QHF_FH_JSI10i_2	117.16	40.568			1.1416	1.3361	9.9402	4	0	Median	1.6534	1.4225	NaN	1	0	Median	1.1149	1.3422	NaN	1	0	Median	1.1257	1.1286	NaN	1	0	Median	1.1577	1.33	NaN	1	0	Median	334850000	183080000	151770000	44373000	18701000	25672000	92707000	53256000	39451000	130750000	76945000	53804000	67020000	34174000	32845000	12099	2521	11464	74316;74317;74318;74319	100546;100547;100548;100549	100549			4	
EIVYPSIDEAR	0	Unmodified	1290.6456	0.6455814	2451	Q13613	MTMR1	Myotubularin-related protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.646	52.981	2	0.020472	48136	160511_QHF_FH_JSI12i_1	49.35	31.039			0.70646	0.74485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70646	0.74485	NaN	1	1	Median	42533000	25838000	16695000	0	0	0	0	0	0	0	0	0	42533000	25838000	16695000	12100	2451	11465	74320	100550	100550			1	
EIWDMFGVFFANHPDLR	0	Unmodified	2092.9829	0.98291673	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.151	88.732	3	1.4287E-44	50098	160513_QHF_FH_JSI11Kac_6	188.04	176.4			0.94774	0.98736	9.9231	4	0	Median	1.3207	1.1486	NaN	1	0	Median	0.8094	0.97134	NaN	1	0	Median	1.0641	1.0036	NaN	1	0	Median	0.84408	0.90688	NaN	1	0	Median	1060800000	536850000	523940000	289320000	122950000	166380000	483650000	271790000	211860000	135430000	68077000	67352000	152390000	74033000	78355000	12101	534	11466	74321;74322;74323;74324	100551;100552;100553;100554;100555;100556	100551			6	
EIWDMFGVFFANHPDLRR	0	Unmodified	2249.084	0.084027761	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	94.377	86.534	3;4	1.9989E-18	48293	160513_QHF_FH_JSI9Kac_6	146.3	129.61			1.1593	1.0905	55.103	5	1	Median	1.2615	1.0905	NaN	1	0	Median	0.47536	0.56417	63.303	2	1	Median	1.5058	1.4762	NaN	1	0	Median	1.1593	1.2281	NaN	1	0	Median	479520000	233880000	245650000	114540000	57743000	56797000	269080000	138230000	130850000	42149000	14829000	27320000	53759000	23079000	30680000	12102	534	11467	74325;74326;74327;74328;74329	100557;100558;100559;100560;100561	100557			4	
EIWHLLK	1	Unmodified	937.53854	0.53853756	246	O15111	CHUK	Inhibitor of nuclear factor kappa-B kinase subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	55.402	55.281	3	0.0044103	49003	160511_QHF_FH_JSI11i_3	60.961	41.484			3.2876	3.3692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2876	3.3692	NaN	1	1	Median	24873000	2441900	22431000	0	0	0	0	0	0	9335200	0	9335200	15537000	2441900	13096000	12103	246	11468	74330;74331	100562;100563	100562			2	
EIWLLVDHLFK	1	Unmodified	1411.7864	0.7863724	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	95.094	85.652	3	2.3997E-05	50545	160513_QHF_FH_JSI10Kac_6	98.156	70.493			0.25149	0.26829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25149	0.26829	NaN	1	1	Median	28217000	25771000	2446400	0	0	0	0	0	0	0	0	0	28217000	25771000	2446400	12104	2179	11469	74332;74333;74334	100564;100565;100566	100566			3	
EIYCPAPPQIDNGIIQGER	0	Unmodified	2169.0525	0.052452861	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.118	71.657	2	4.7836E-10	65144	160511_QHF_FH_JSI11i_1	140.1	121.74			0.62327	0.61617	21.378	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7264	0.71672	NaN	1	1	Median	0.53478	0.52972	NaN	1	1	Median	43377000	26977000	16400000	0	0	0	0	0	0	27860000	15207000	12652000	15517000	11769000	3747400	12105	893	11470	74335;74336;74337;74338	100567;100568;100569;100570	100567			4	
EIYCPAPPQIDNGIIQGERDHYGYR	0	Unmodified	2960.3875	0.38753958	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		68.249	68.249	4	9.5597E-05	60584	160511_QHF_FH_JSI11i_3	44.258	41.378			0.757	0.71193	23.129	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.757	0.71193	23.129	2	1	Median	NaN	NaN	NaN	0	0	Median	102260000	58098000	44161000	0	0	0	0	0	0	102260000	58098000	44161000	0	0	0	12106	893	11471	74339;74340	100571;100572	100571			2	
EIYDQFGEEGLK	1	Unmodified	1426.6616	0.6616254	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	56.593	55.839	2	7.2815E-08	50622	160511_QHF_FH_JSI12i_1	138.25	104.98			1.1891	1.1407	18.333	5	4	Median	1.2475	1.0381	13.33	2	2	Median	1.1891	1.3906	NaN	1	1	Median	1.2118	1.1751	NaN	1	1	Median	0.85526	0.87767	NaN	1	0	Median	478190000	238750000	239440000	192740000	100190000	92547000	92062000	46303000	45759000	104800000	54198000	50598000	88597000	38060000	50536000	12107	5269	11472	74341;74342;74343;74344;74345	100573;100574;100575;100576;100577;100578	100574			6	
EIYELEK	1	Unmodified	922.46476	0.46476349	4044	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.986	33.744	2	0.053281	30313	160511_QHF_FH_JSI11i_1	47.082	13.285			0.54167	0.52374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54167	0.52374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73766000	39113000	34653000	0	0	0	0	0	0	73766000	39113000	34653000	0	0	0	12108	4044	11473	74346	100579	100579			1	
EIYENMAPGENK	1	Oxidation (M)	1409.6133	0.613295	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	1	2	4	27.393	25.213	2	3.0694E-07	28789	160511_QHF_FH_JSI12i_1	132.62	93.614			0.69429	0.65495	82.441	8	4	Median	0.84135	0.70111	NaN	1	0	Median	0.2593	0.2897	NaN	1	1	Median	0.63229	0.61184	76.082	2	1	Median	0.80675	0.87444	91.158	4	2	Median	313070000	151250000	161820000	108560000	44295000	64266000	20164000	11438000	8725200	22455000	14675000	7780300	161890000	80843000	81048000	12109	2370	11474	74347;74348;74349;74350;74351;74352;74353;74354;74355	100580;100581;100582;100583;100584;100585;100586;100587;100588;100589	100581		1928	10	
EIYENMAPGENK	1	Unmodified	1393.6184	0.61838038	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	2	3	3	36.138	31.975	2	5.0385E-63	28498	160511_QHF_FH_JSI11i_1	205.13	166.36			0.85669	0.91524	27.635	7	4	Median	0.85669	0.69453	NaN	1	0	Median	0.93475	1.1081	37.178	2	1	Median	0.93681	0.90863	41.421	2	1	Median	0.86368	0.933	2.7175	2	2	Median	1769100000	794320000	974740000	418620000	176010000	242610000	468730000	220780000	247950000	458830000	206190000	252640000	422880000	191340000	231550000	12110	2370	11474	74356;74357;74358;74359;74360;74361;74362;74363;74364	100590;100591;100592;100593;100594;100595;100596;100597;100598;100599;100600;100601;100602;100603;100604	100592			15	
EIYGINFSPNGYHIATGSGDNTCK	1	Unmodified	2614.1758	0.17581547	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.619	72.472	3	5.5557E-13	62869	160511_QHF_FH_JSI12i_3	98.74	96.017			0.95752	0.95281	18.327	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87538	0.837	NaN	1	0	Median	1.0474	1.0846	NaN	1	0	Median	54943000	26596000	28347000	0	0	0	0	0	0	29870000	15688000	14182000	25073000	10908000	14165000	12111	308	11475	74365;74366	100605;100606;100607	100606			3	
EIYHFTLEK	1	Unmodified	1178.5972	0.59717465	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.7		6	2						5	5	2	3	3	52.888	49.172	2;3	6.0921E-07	42321	160511_QHF_FH_JSI11i_2	125.97	97.242			1.1109	1.1069	13.172	12	1	Median	1.2982	1.1069	17.508	4	1	Median	0.90334	1.0902	5.7058	2	0	Median	1.0601	1.0808	14.156	3	0	Median	1.0192	1.1322	10.61	3	0	Median	1250600000	588250000	662380000	238970000	103300000	135680000	242260000	131100000	111170000	449840000	205170000	244680000	319550000	148690000	170860000	12112	4411	11476	74367;74368;74369;74370;74371;74372;74373;74374;74375;74376;74377;74378;74379	100608;100609;100610;100611;100612;100613;100614;100615;100616;100617;100618;100619;100620;100621	100613			14	
EIYLPIR	0	Unmodified	902.52255	0.52255314	2820	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.356	61.835	2	0.0099712	53800	160511_QHF_FH_JSI11i_2	67.035	7.394			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12113	2820	11477	74380	100622	100622			1	
EIYMTFLSSK	1	Oxidation (M)	1233.5951	0.59512574	352	O43665	RGS10	Regulator of G-protein signaling 10	yes	yes	0	0	1	0	By MS/MS				15	0								2		2				65.46	54.784	2	0.04356	28772	160513_QHF_FH_JSI9Kac_5	51.445	19.125			1.1463	0.94692	57.014	2	2	Median	1.1463	0.94692	57.014	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4509200	1964100	2545100	4509200	1964100	2545100	0	0	0	0	0	0	0	0	0	12114	352	11478	74381;74382	100623;100624	100624			2	
EIYNQVNVVLK	1	Unmodified	1317.7293	0.72925145	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	58.276	57.604	2	3.2106E-07	52428	160511_QHF_FH_JSI12i_1	119.68	81.388			0.9323	1.0635	35.845	5	1	Median	0.8824	0.74815	NaN	1	0	Median	1.1822	1.414	36.208	2	1	Median	0.81077	0.77681	NaN	1	0	Median	1.024	1.0635	NaN	1	0	Median	504480000	274600000	229880000	23359000	14464000	8895500	179500000	86921000	92575000	150220000	97518000	52698000	151410000	75695000	75714000	12115	5015	11479	74383;74384;74385;74386;74387	100625;100626;100627;100628;100629;100630	100626			6	
EIYTHFTCATDTK	1	Unmodified	1585.7083	0.70825802	915;818;2049	P04899;P08754;P63096	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.56	4.06		7	1					1			2	4	3	37.76	35.609	2;3	1.8804E-07	30351	160511_QHF_FH_JSI11i_2	92.063	80.371			1.233	1.281	43.258	7	3	Median	NaN	NaN	NaN	0	0	Median	0.70079	0.84613	NaN	1	1	Median	0.66952	0.67757	51.681	3	2	Plateau	1.5457	1.7219	23.518	3	0	Median	391390000	181970000	209410000	0	0	0	90765000	46103000	44662000	156000000	78072000	77933000	144620000	57799000	86819000	12116	818;915;2049	11480	74388;74389;74390;74391;74392;74393;74394;74395;74396	100631;100632;100633;100634;100635;100636;100637;100638;100639;100640;100641	100638			11	
EKDLLIK	2	Unmodified	857.52222	0.52221879	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	30.074	30.01	3	0.023964	25920	160511_QHF_FH_JSI11i_3	35.88	0			0.34623	0.35338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34623	0.35338	NaN	1	1	Median	16104000	12491000	3613500	0	0	0	0	0	0	0	0	0	16104000	12491000	3613500	12117	2691	11481	74397;74398	100642;100643	100642			2	
EKEDDVPQFTSAGENFDK	2	Unmodified	2054.9069	0.90689406	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.504	50.83	3	1.1894E-08	45903	160511_QHF_FH_JSI11i_1	98.391	89.571			0.93424	0.93391	11.976	4	0	Median	0.95237	0.77827	NaN	1	0	Median	0.87207	1.0378	NaN	1	0	Median	0.96105	0.94204	NaN	1	0	Median	0.91644	0.92585	NaN	1	0	Median	592060000	315560000	276500000	90842000	47906000	42937000	181020000	101520000	79496000	139620000	78631000	60991000	180580000	87496000	93081000	12118	1313	11482	74399;74400;74401;74402	100644;100645;100646;100647;100648;100649;100650;100651	100644			8	
EKEDFEK	2	Unmodified	923.42363	0.42362696	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	7.9189	7.2945	3	0.04002	5148	160511_QHF_FH_JSI12i_2	35.445	23.238			1.3795	1.5441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3795	1.5441	NaN	1	1	Median	280730000	148580000	132160000	0	0	0	0	0	0	0	0	0	280730000	148580000	132160000	12119	878	11483	74403	100652	100652			1	
EKEEFAVPENSSVQQFK	2	Unmodified	1994.9585	0.9585357	5299;5427	Q9UHD9;Q9UMX0	UBQLN2;UBQLN1	Ubiquilin-2;Ubiquilin-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.68	6	7	2							3	4	4	4	51.477	50.748	2;3	6.926E-08	45851	160511_QHF_FH_JSI10i_1	127.75	122.17			0.92607	0.96784	28.587	14	2	Median	0.95442	0.82699	48.918	3	1	Median	0.77279	0.91925	35.322	3	1	Plateau	1.0626	1.0621	21.877	4	0	Median	0.88523	0.94073	20.354	4	0	Median	2746300000	1381300000	1364900000	398370000	163430000	234940000	639260000	338370000	300890000	947680000	466980000	480690000	760950000	412530000	348410000	12120	5299;5427	11484	74404;74405;74406;74407;74408;74409;74410;74411;74412;74413;74414;74415;74416;74417;74418	100653;100654;100655;100656;100657;100658;100659;100660;100661;100662;100663;100664;100665;100666;100667;100668;100669;100670;100671;100672;100673;100674;100675;100676;100677;100678;100679;100680	100665			28	
EKEELDR	1	Unmodified	917.44543	0.44542503	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	no	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	5.5949	5.2491	3	0.011348	3100	160511_QHF_FH_JSI11i_2	49.833	17.691			1.0768	1.151	12.101	5	0	Median	1.0671	0.90791	NaN	1	0	Median	0.96699	1.1915	NaN	1	0	Median	1.1213	1.099	6.5364	2	0	Median	1.0768	1.2222	NaN	1	0	Median	1241700000	570640000	671030000	203120000	95552000	107560000	221610000	103340000	118280000	494910000	218060000	276860000	322020000	153690000	168320000	12121	2738	11485	74419;74420;74421;74422;74423	100681;100682	100682			2	
EKEELELLK	2	Unmodified	1129.6231	0.62305505	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.582	39.621	3	6.6083E-06	33796	160511_QHF_FH_JSI11i_2	98.943	78.952			0.73773	0.70281	20.147	4	1	Median	0.7874	0.66342	NaN	1	1	Median	0.57584	0.70995	NaN	1	0	Median	0.6912	0.69575	NaN	1	0	Median	0.93197	1.0274	NaN	1	0	Median	310510000	176300000	134210000	50323000	28717000	21606000	71778000	38100000	33677000	129230000	75571000	53656000	59187000	33916000	25272000	12122	655	11486	74424;74425;74426;74427	100683;100684;100685;100686;100687;100688	100686			6	
EKEELEQR	1	Unmodified	1059.5197	0.51965261	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	6.332	5.926	2	0.024467	3806	160511_QHF_FH_JSI9i_2	71.501	15.825			0.748	0.81789	12.659	4	0	Median	1.022	0.87463	NaN	1	0	Median	0.73544	0.88736	NaN	1	0	Median	0.76077	0.76484	NaN	1	0	Median	0.60769	0.67788	NaN	1	0	Median	334610000	189210000	145390000	66136000	28766000	37370000	63034000	44273000	18761000	132510000	75243000	57271000	72923000	40930000	31992000	12123	2502	11487	74428;74429;74430;74431	100689;100690;100691;100692	100691			4	
EKEELETGKK	3	Unmodified	1189.619	0.6190323	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	3	1	5.7395	5.6562	2;3	2.2467E-05	3460	160511_QHF_FH_JSI11i_3	125.75	76.953			0.51139	0.56658	96.93	4	2	Median	NaN	NaN	NaN	0	0	Median	0.41406	0.5071	NaN	1	0	Median	1.1188	1.0563	155.12	2	2	Median	0.6316	0.63304	NaN	1	0	Median	251910000	127980000	123930000	0	0	0	31712000	21135000	10578000	129500000	53288000	76210000	90702000	53561000	37142000	12124	454	11488	74432;74433;74434;74435;74436	100693;100694;100695;100696	100694			4	
EKEELMER	1	Unmodified	1062.5016	0.5015597	1270;1426	P35241;P26038	RDX;MSN	Radixin;Moesin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	2.98	1	12	4					1		4	3	5	6	11.81	10.902	2;3	0.00011868	8362	160511_QHF_FH_JSI12i_3	113.74	61.885			0.92732	0.90466	64.622	18	10	Median	1.4121	1.2073	74.963	4	4	Median	0.3151	0.39442	103.18	3	3	Plateau	0.94544	0.95154	21.105	5	0	Median	0.66301	0.70113	68.849	6	3	Median	4203400000	2074700000	2128700000	845210000	345240000	499970000	862190000	536890000	325300000	1220100000	550460000	669680000	1275800000	642080000	633760000	12125	1426;1270	11489	74437;74438;74439;74440;74441;74442;74443;74444;74445;74446;74447;74448;74449;74450;74451;74452;74453;74454	100697;100698;100699;100700;100701;100702;100703;100704;100705;100706;100707;100708;100709;100710;100711;100712;100713;100714;100715;100716;100717;100718;100719	100718			23	
EKEEVAEEAQSGGD	1	Unmodified	1476.6216	0.62161108	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.487	12.068	2	9.1509E-15	9556	160511_QHF_FH_JSI9i_1	168.3	157.47			1.0902	1.0052	30.402	4	0	Median	1.0303	0.82387	NaN	1	0	Median	0.62876	0.74445	NaN	1	0	Median	1.441	1.3967	NaN	1	0	Median	1.1537	1.2264	NaN	1	0	Median	3777800000	1758500000	2019300000	947840000	451030000	496810000	875310000	530280000	345020000	878890000	361840000	517040000	1075700000	415360000	660390000	12126	599	11490	74455;74456;74457;74458	100720;100721;100722;100723;100724;100725;100726;100727;100728	100727			9	
EKEPVVVETVEEK	2	Unmodified	1513.7876	0.78755419	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	36.258	35.315	2	0.016716	30958	160511_QHF_FH_JSI10i_2	77.593	52.739			0.93288	0.93045	15.284	4	3	Median	0.98199	0.83787	NaN	1	1	Median	0.73762	0.89521	NaN	1	1	Median	1.1873	1.1916	NaN	1	1	Median	0.88622	0.96708	NaN	1	0	Median	87473000	43985000	43488000	21440000	10530000	10910000	20946000	12059000	8887200	27074000	12953000	14121000	18012000	8443600	9568900	12127	3549	11491	74459;74460;74461;74462	100729;100730;100731;100732	100732			4	
EKERLSDELLVK	2	Unmodified	1457.809	0.80895834	3015	Q66GS9	CEP135	Centrosomal protein of 135 kDa	yes	yes	0	0	0	2	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	103.73	94.376	2	0.043336	54084	160513_QHF_FH_JSI11Kac_6	68.735	23.598			0.91419	0.85559	32.362	3	0	Median	0.91419	0.7788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9078	0.85559	NaN	1	0	Median	1.3029	1.4213	NaN	1	0	Median	118820000	60933000	57891000	92155000	47937000	44218000	0	0	0	10074000	5326700	4747000	16595000	7669000	8926200	12128	3015	11492	74463;74464;74465	100733	100733			1	
EKFEEMIQQIK	2	Unmodified	1421.7225	0.72245152	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							3	2	3	4	60.969	60.162	2;3	1.8095E-06	52026	160511_QHF_FH_JSI12i_2	136.48	116.71			0.97395	1.0089	48.674	11	4	Median	1.1762	1.001	6.2691	2	0	Median	0.84706	1.0382	18.284	2	0	Median	0.85589	0.88764	80.241	3	1	Plateau	1.0212	1.1436	52.612	4	3	Median	5873000000	2438100000	3434900000	837240000	368880000	468350000	1112800000	547390000	565380000	1831800000	694300000	1137500000	2091200000	827510000	1263700000	12129	1630	11493	74466;74467;74468;74469;74470;74471;74472;74473;74474;74475;74476;74477	100734;100735;100736;100737;100738;100739;100740;100741;100742;100743;100744;100745;100746;100747;100748;100749;100750;100751;100752;100753;100754	100737			21	
EKFEEMIQQIK	2	Oxidation (M)	1437.7174	0.71736614	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	1		By matching		By MS/MS	2.67	0.471		1	2								1		2	40.334	39.753	3	0.004506	33718	160511_QHF_FH_JSI12i_3	48.004	27.577			0.62229	0.6957	1.0461	2	0	Median	NaN	NaN	NaN	0	0	Median	0.56065	0.69058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69071	0.70087	NaN	1	0	Median	61692000	36081000	25611000	0	0	0	20006000	12213000	7793400	0	0	0	41686000	23869000	17818000	12130	1630	11493	74478;74479;74480	100755;100756	100756		1302	2	
EKFEGVELNTDEPPMVFK	2	Unmodified	2108.0136	0.013607739	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	78.231	77.575	3	3.8354E-07	68844	160511_QHF_FH_JSI10i_2	112.3	96.357			0.99266	1.0059	30.973	5	1	Median	1.0835	0.90922	NaN	1	0	Median	0.7759	0.95545	NaN	1	0	Median	1.4413	1.3986	46.622	2	1	Median	0.99266	1.1164	NaN	1	0	Median	338840000	152360000	186470000	50022000	20669000	29352000	66436000	39983000	26452000	172380000	62868000	109510000	50005000	28844000	21161000	12131	1824	11494	74481;74482;74483;74484;74485	100757;100758;100759;100760;100761;100762;100763	100762			7	
EKFEGVELNTDEPPMVFK	2	Oxidation (M)	2124.0085	0.0085223609	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	69.965	69.667	3	0.042255	60338	160511_QHF_FH_JSI12i_3	36.637	26.263			0.7568	0.80054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7568	0.80054	NaN	1	1	Median	21356000	14027000	7329400	0	0	0	0	0	0	0	0	0	21356000	14027000	7329400	12132	1824	11494	74486	100764	100764			1	
EKFENLGIQPPK	2	Unmodified	1398.7507	0.75071518	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	46.387	46.266	3	0.048656	39306	160511_QHF_FH_JSI12i_3	32.068	22.78			1.3502	1.3453	31.335	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1393	1.0779	NaN	1	0	Median	1.6	1.6789	NaN	1	1	Median	95485000	40754000	54730000	0	0	0	0	0	0	37424000	18843000	18581000	58061000	21911000	36150000	12133	1131	11495	74487;74488	100765;100766	100766			2	
EKFENLGIQPPK	2	Acetyl (K)	1440.7613	0.76127986	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							4				2		2	72.317	61.687	2	0.00099067	33024	160513_QHF_FH_JSI10Kac_4	83.397	64.154			1.6087	1.8401	125.47	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6441	0.75776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4.0176	4.4685	NaN	1	1	Median	19448000	7139500	12309000	0	0	0	6215300	3683800	2531600	0	0	0	13233000	3455700	9777100	12134	1131	11495	74489;74490;74491;74492	100767;100768;100769;100770	100767	981		4	
EKFPQEEAIIDK	2	Unmodified	1445.7402	0.74021007	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	43.362	43.13	2	0.0050328	36783	160511_QHF_FH_JSI12i_3	72.006	37.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12135	3073	11496	74493	100771	100771			1	
EKGEGALPTGK	2	Unmodified	1085.5717	0.57168818	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.761	10.855	3	0.055354	8172	160511_QHF_FH_JSI12i_3	30.004	25.538			1.0385	1.0293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0385	1.0293	NaN	1	1	Median	30182000	17798000	12383000	0	0	0	0	0	0	0	0	0	30182000	17798000	12383000	12136	3323	11497	74494	100772	100772			1	
EKHLAEIK	2	Acetyl (K)	1008.5604	0.56039521	1858	P55327	TPD52	Tumor protein D52	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		30.631	21.021	2	0.046015	12871	160513_QHF_FH_JSI11Kac_5	56.729	24.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1603200	1603200	0	0	0	0	0	0	0	1603200	1603200	0	0	0	0	12137	1858	11498	74495	100773	100773			1	
EKLDFHEAQQK	2	Acetyl (K)	1413.6888	0.6888432	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	40.448	30.642	3	0.013222	18206	160513_QHF_FH_JSI12Kac_4	37.613	31.89			1.2671	1.3603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2671	1.3603	NaN	1	0	Median	3282500	1558200	1724300	0	0	0	0	0	0	0	0	0	3282500	1558200	1724300	12138	2584	11499	74496	100774	100774	2555		1	
EKLEATINELV	1	Unmodified	1257.6816	0.68163256	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	3	1	71.512	70.984	2	0.0011153	61977	160511_QHF_FH_JSI11i_2	90.629	79.478			1.0224	0.97936	14.639	4	0	Median	1.1803	1.008	NaN	1	0	Median	0.77734	0.95155	NaN	1	0	Median	0.88563	0.86886	NaN	1	0	Median	1.1874	1.2279	NaN	1	0	Median	567870000	303300000	264580000	31810000	14628000	17182000	278980000	168680000	110310000	138820000	69700000	69117000	118260000	50291000	67970000	12139	973	11500	74497;74498;74499;74500;74501;74502;74503	100775;100776;100777;100778;100779;100780	100779			6	
EKLEDFFK	2	Unmodified	1054.5335	0.53351176	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.332	54.378	3	0.001548	46607	160511_QHF_FH_JSI12i_2	75.378	44.305			8.53	9.4635	25.035	4	2	Median	7.1509	6.2894	NaN	1	1	Median	9.1035	10.909	NaN	1	0	Median	10.15	10.422	NaN	1	0	Median	7.9927	8.5932	NaN	1	1	Median	589260000	74257000	515000000	99926000	12723000	87202000	91357000	5321000	86036000	160200000	11142000	149060000	237770000	45071000	192700000	12140	5437	11501	74504;74505;74506;74507	100781;100782;100783;100784	100781			4	
EKLPGELEPVQATQNK	2	Unmodified	1779.9367	0.93667805	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	8	8	2				2			3	4	6	7	43.71	41.961	2;3	1.041E-05	35890	160511_QHF_FH_JSI11i_2	109.14	103.6			0.90419	0.88901	25.154	18	10	Median	0.97522	0.83941	30.911	3	2	Median	0.80515	0.94537	22.839	4	2	Median	0.88123	0.8566	36.389	5	3	Median	0.92239	0.96684	17.006	6	3	Median	1239200000	590470000	648710000	219480000	107510000	111980000	238980000	123720000	115270000	469630000	199410000	270220000	311080000	159830000	151240000	12141	570	11502	74508;74509;74510;74511;74512;74513;74514;74515;74516;74517;74518;74519;74520;74521;74522;74523;74524;74525;74526;74527	100785;100786;100787;100788;100789;100790;100791;100792;100793;100794;100795;100796;100797;100798;100799;100800;100801;100802;100803;100804;100805	100800			20	
EKLQIVEMPLAHK	2	Acetyl (K)	1576.8647	0.86469908	1706	P50454	SERPINH1	Serpin H1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.492	66.856	3	0.037932	35602	160513_QHF_FH_JSI11Kac_5	37.013	28.836			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2033700	2033700	0	0	0	0	0	0	0	2033700	2033700	0	0	0	0	12142	1706	11503	74528	100806	100806			1	
EKMDLTAK	2	Acetyl (K);Oxidation (M)	992.48485	0.48484701	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		20.272	12.808	2	0.023034	8819	160513_QHF_FH_JSI11Kac_3	60.436	24.041			0.2628	0.25292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2628	0.25292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3180400	2407800	772610	0	0	0	0	0	0	3180400	2407800	772610	0	0	0	12143	1503	11504	74529	100807	100807	1522		0	
EKPDIFQLVSVK	2	Unmodified	1401.7868	0.78676633	3415	Q8IWA0	WDR75	WD repeat-containing protein 75	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.771	75.487	3	0.0055891	65431	160511_QHF_FH_JSI12i_3	44.511	32.897			0.88216	0.89154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88216	0.89154	NaN	1	0	Median	29172000	19195000	9976400	0	0	0	0	0	0	0	0	0	29172000	19195000	9976400	12144	3415	11505	74530	100808	100808			1	
EKPDQDAEGK	2	Unmodified	1115.5095	0.50948185	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.28	6.37	12	8	4			5	5	6	3	7	11	14	11	5.1899	1.3429	1;2;3	7.6045E-10	2613	160511_QHF_FH_JSI12i_1	132.32	111.45			0.93948	1.0111	19.774	42	2	Median	1.3539	1.1336	28.45	7	0	Median	0.8431	1.0239	14.636	10	0	Median	1.0877	1.0684	18.784	14	2	Median	0.80172	0.67124	17.098	11	0	Linear	38484000000	17493000000	20991000000	8526900000	3371700000	5155200000	9848700000	4601300000	5247500000	9489500000	4199100000	5290300000	10619000000	5320700000	5298100000	12145	2101	11506	74531;74532;74533;74534;74535;74536;74537;74538;74539;74540;74541;74542;74543;74544;74545;74546;74547;74548;74549;74550;74551;74552;74553;74554;74555;74556;74557;74558;74559;74560;74561;74562;74563;74564;74565;74566;74567;74568;74569;74570;74571;74572;74573	100809;100810;100811;100812;100813;100814;100815;100816;100817;100818;100819;100820;100821;100822;100823;100824;100825;100826;100827;100828;100829;100830;100831;100832;100833;100834;100835;100836;100837;100838;100839;100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858;100859	100821			47	
EKPDQDAEGKAEEK	3	Unmodified	1572.7267	0.72674485	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.709	10	11	4							5	5	7	8	7.6101	7.3276	2;3;4	6.2616E-05	5118	160511_QHF_FH_JSI9i_2	91.207	71.467			0.86928	0.91922	21.867	24	4	Median	1.1434	0.95815	19.104	4	0	Median	0.80334	0.99005	33.435	5	2	Median	0.85167	0.84223	24.588	7	2	Median	0.88963	0.92207	13.314	8	0	Median	3961100000	2046200000	1914800000	759670000	315220000	444450000	1013300000	575950000	437390000	1023200000	529630000	493590000	1164800000	625450000	539370000	12146	2101	11507	74574;74575;74576;74577;74578;74579;74580;74581;74582;74583;74584;74585;74586;74587;74588;74589;74590;74591;74592;74593;74594;74595;74596;74597;74598	100860;100861;100862;100863;100864;100865;100866;100867;100868;100869;100870;100871;100872;100873;100874;100875;100876;100877;100878;100879;100880;100881;100882;100883;100884;100885;100886;100887;100888;100889;100890	100879			31	
EKPDSVDGQQPLVNGVP	1	Unmodified	1777.8846	0.88464248	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.767	53.016	2	0.00096072	48137	160511_QHF_FH_JSI12i_1	76.522	70.419			0.96632	1.2035	11.732	3	0	Plateau	1.5272	1.2035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2541	1.2333	NaN	1	0	Median	0.96632	0.99536	NaN	1	0	Median	84116000	37387000	46729000	25793000	9269900	16523000	0	0	0	27403000	12067000	15336000	30919000	16050000	14869000	12147	2248	11508	74599;74600;74601	100891;100892;100893;100894	100892			4	
EKPGPEDK	2	Unmodified	898.43961	0.43961137	1074	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	5.0597	4.7067	2;3	0.0094376	2570	160511_QHF_FH_JSI11i_2	50.473	25.579			0.96505	1.0365	27.906	8	3	Median	1.4213	1.175	17.702	2	1	Median	1.0417	1.2575	19.884	2	1	Median	0.88168	0.87855	23.349	2	1	Median	0.66553	0.72405	15.026	2	0	Median	2993800000	1571600000	1422300000	571520000	246050000	325470000	808640000	435320000	373330000	954020000	519470000	434550000	659640000	370730000	288910000	12148	1074	11509	74602;74603;74604;74605;74606;74607;74608;74609	100895;100896;100897;100898;100899;100900;100901;100902;100903;100904;100905;100906;100907	100906			13	
EKPGSEVLTLLLK	2	Unmodified	1425.8443	0.84428121	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									3	1	83.534	83.439	3	0.0026664	72360	160511_QHF_FH_JSI12i_3	59.227	50.817			0.89962	0.87601	12.024	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85481	0.80461	NaN	1	1	Median	0.94678	0.95375	NaN	1	1	Median	145590000	72126000	73463000	0	0	0	0	0	0	43175000	22731000	20444000	102410000	49395000	53019000	12149	2977	11510	74610;74611;74612;74613	100908;100909;100910;100911	100911			4	
EKPKPTPDYLMQLMNDK	3	Unmodified	2047.0118	0.0118336	4200	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	2	By MS/MS		By MS/MS		3	0			2							1		1		73.376	72.648	3	0.00076028	64254	160511_QHF_FH_JSI11i_3	70.942	61.412			0.68204	0.6133	59.876	2	2	Median	1.1062	0.93659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42052	0.40161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67128000	34169000	32958000	11323000	4350400	6973000	0	0	0	55804000	29819000	25985000	0	0	0	12150	4200	11511	74614;74615	100912;100913	100912			2	
EKPLALYAFSNSSQVVK	2	Unmodified	1880.0044	0.0043636815	1561	P43353	ALDH3B1	Aldehyde dehydrogenase family 3 member B1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.689	65.396	3	0.00053049	56506	160511_QHF_FH_JSI12i_3	64.275	59.658			0.69898	0.67501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69898	0.67501	NaN	1	1	Median	44751000	28476000	16275000	0	0	0	0	0	0	0	0	0	44751000	28476000	16275000	12151	1561	11512	74616	100914	100914			1	
EKPLPVICSTSAASLK	2	Unmodified	1699.9179	0.91785686	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	51.031	50.795	3	0.0031857	43471	160511_QHF_FH_JSI12i_3	55.589	43.673			1.1564	1.1916	19.733	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1564	1.1916	19.733	2	2	Median	49643000	19200000	30443000	0	0	0	0	0	0	0	0	0	49643000	19200000	30443000	12152	5481	11513	74617;74618	100915;100916	100915			2	
EKPNSAHR	1	Acetyl (K)	979.48354	0.48354187	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		5.8725	-3.6597	3	0.035566	1942	160513_QHF_FH_JSI11Kac_5	39.213	12.611			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4024800	4024800	0	0	0	0	0	0	0	4024800	4024800	0	0	0	0	12153	432	11514	74619	100917	100917			1	
EKPPEEPTTWTGYFGK	2	Unmodified	1865.8836	0.88357984	5636	Q9Y4P8	WIPI2	WD repeat domain phosphoinositide-interacting protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	60.882	60.745	3	8.0616E-05	52322	160511_QHF_FH_JSI12i_3	87.138	71.32			0.97418	0.95635	12.091	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1046	1.0417	NaN	1	1	Median	0.85913	0.87799	NaN	1	1	Median	187020000	96491000	90527000	0	0	0	0	0	0	76317000	42435000	33881000	110700000	54056000	56645000	12154	5636	11515	74620;74621;74622	100918;100919;100920	100919			3	
EKPPITVVGDVGGR	1	Unmodified	1422.7831	0.78307794	402;2543	O60256;Q14558	PRPSAP2;PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							1	2	4	2	43.219	42.55	2;3	4.7748E-05	37283	160511_QHF_FH_JSI11i_3	84.753	82.614			1.0781	1.0812	14.667	9	0	Median	1.0166	0.89497	NaN	1	0	Median	1.0011	1.1933	31.228	2	0	Median	1.1596	1.1027	5.2975	4	0	Median	0.99552	1.0475	7.8844	2	0	Median	1079300000	526850000	552480000	128240000	60590000	67647000	173830000	100460000	73368000	545400000	252430000	292970000	231870000	113370000	118500000	12155	402;2543	11516	74623;74624;74625;74626;74627;74628;74629;74630;74631	100921;100922;100923;100924;100925;100926;100927;100928;100929;100930;100931;100932;100933;100934	100921			13	
EKPQANVPSALPSLPAGSGLK	2	Unmodified	2060.1266	0.12660408	5271	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	3	3	3							1	3	3	2	64.716	64.1	3	6.0539E-07	56857	160511_QHF_FH_JSI11i_3	83.395	81.251			0.98239	0.9643	24.921	9	2	Median	0.98239	0.81958	NaN	1	1	Median	0.7817	0.95392	20.192	3	0	Median	1.021	0.9643	12.845	3	0	Plateau	1.2411	1.2412	46.326	2	1	Median	754560000	399620000	354940000	69168000	33098000	36070000	167000000	92983000	74020000	339780000	173950000	165830000	178610000	99593000	79015000	12156	5271	11517	74632;74633;74634;74635;74636;74637;74638;74639;74640	100935;100936;100937;100938;100939;100940;100941;100942;100943;100944;100945;100946;100947	100935			13	
EKPQISAAQSTQPQK	2	Unmodified	1639.8529	0.85294842	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	16.956	16.539	3	4.2524E-05	13691	160511_QHF_FH_JSI11i_3	83.54	78.167			0.9654	0.91928	23.824	6	5	Median	1.1354	0.97243	NaN	1	1	Median	0.54687	0.63733	1.9	2	2	Median	1.0749	1.0228	NaN	1	0	Median	0.9731	0.97614	16.436	2	2	Median	321740000	183800000	137940000	20404000	13935000	6469000	40550000	28507000	12043000	128320000	64464000	63860000	132460000	76893000	55568000	12157	2950	11518	74641;74642;74643;74644;74645;74646	100948;100949;100950;100951;100952;100953;100954	100949			7	
EKPSEDMESNTFFDPR	1	Unmodified	1927.8258	0.82580697	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.345	51.11	3	0.0078115	43752	160511_QHF_FH_JSI12i_3	48.547	36.855			0.68407	0.7101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68407	0.7101	NaN	1	1	Median	38713000	21222000	17490000	0	0	0	0	0	0	0	0	0	38713000	21222000	17490000	12158	327	11519	74647	100955	100955			1	
EKPSKPTEK	3	Unmodified	1042.5659	0.56587452	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	2	2	1	4.7426	4.4608	2;3	0.0069378	2320	160511_QHF_FH_JSI11i_3	59.426	37.34			0.94976	0.8061	29.021	8	0	Median	0.96741	0.76155	31.927	3	0	Plateau	0.70906	0.8061	1.5568	2	0	Median	1.1116	1.037	11.856	2	0	Median	0.49121	0.50697	NaN	1	0	Median	7691500000	4621100000	3070400000	1655400000	740120000	915330000	3002300000	2079500000	922840000	2897800000	1709400000	1188300000	135910000	92029000	43886000	12159	1181	11520	74648;74649;74650;74651;74652;74653;74654;74655	100956;100957;100958;100959;100960;100961;100962;100963;100964	100956			7	
EKPSYDTETDPSEGLMNVLK	2	Unmodified	2252.0518	0.051843739	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.662	4	7	2							3	3	5	2	73.007	72.194	2;3	1.5435E-19	63130	160511_QHF_FH_JSI11i_2	167.92	163.3			0.9059	0.93306	26.218	11	5	Median	1.0992	0.87753	15.141	3	1	Plateau	0.99665	1.167	31.642	2	1	Median	0.90383	0.8923	28.31	4	2	Median	0.94478	1.0223	3.8054	2	1	Median	1135200000	495170000	640030000	322920000	158710000	164210000	85783000	43715000	42068000	643700000	253550000	390150000	82796000	39187000	43609000	12160	4837	11521	74656;74657;74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668	100965;100966;100967;100968;100969;100970;100971;100972;100973;100974;100975;100976;100977;100978;100979;100980;100981;100982;100983;100984;100985;100986;100987;100988	100983			24	
EKPSYDTETDPSEGLMNVLK	2	Oxidation (M)	2268.0468	0.046758361	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							1	1	2	2	61.395	60.837	3	4.7553E-06	55235	160511_QHF_FH_JSI12i_1	89.049	83.47			0.78272	0.78671	41.307	6	4	Median	0.956	0.77469	NaN	1	1	Median	0.67293	0.79893	NaN	1	0	Median	0.60444	0.5953	75.479	2	2	Median	0.65625	0.68199	45.298	2	1	Median	277350000	159040000	118310000	42675000	26134000	16540000	53391000	28935000	24455000	85616000	47640000	37976000	95667000	56327000	39340000	12161	4837	11521	74669;74670;74671;74672;74673;74674	100989;100990;100991;100992;100993;100994	100990		2537	6	
EKPSYDTETDPSEGLMNVLKK	3	Unmodified	2380.1468	0.14680676	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	2	1	67.147	66.455	3;4	5.8971E-13	58932	160511_QHF_FH_JSI11i_3	124.66	116.3			0.79297	0.76036	24.871	6	4	Median	0.75347	0.66542	NaN	1	1	Median	0.77796	0.90279	28.45	2	2	Median	0.8619	0.81097	4.9464	2	0	Median	0.52739	0.52228	NaN	1	1	Median	588520000	305810000	282710000	31069000	12415000	18654000	131320000	84290000	47032000	399310000	190100000	209210000	26815000	19003000	7811900	12162	4837	11522	74675;74676;74677;74678;74679;74680	100995;100996;100997;100998;100999;101000;101001	100996			7	
EKPTDMQNFGLR	1	Unmodified	1434.6925	0.69254837	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							1	1	2	2	41.971	41.293	3	5.8401E-09	36270	160511_QHF_FH_JSI11i_3	140.78	105.77			0.99012	1.0205	13.413	6	0	Median	1.3867	1.1895	NaN	1	0	Median	0.72192	0.87508	NaN	1	0	Median	1.0422	1.0205	9.0984	2	0	Median	0.94013	0.9935	18.336	2	0	Median	535710000	268160000	267540000	77021000	29559000	47462000	93197000	52031000	41166000	241820000	124660000	117160000	123670000	61913000	61756000	12163	3685	11523	74681;74682;74683;74684;74685;74686	101002;101003;101004	101002			2	
EKPTTALLDK	2	Unmodified	1114.6234	0.6233894	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.41		4	5					3		3	2	4	3	29.848	27.014	2;3	3.4764E-05	22533	160511_QHF_FH_JSI12i_3	86.911	60.793			1.0677	1.0525	52.499	12	5	Median	1.0224	0.8552	75.442	3	1	Median	1.5025	1.85	18.21	2	2	Median	1.2967	1.1445	44.927	4	1	Linear	0.9325	0.94068	33.563	3	1	Plateau	4164100000	2232400000	1931700000	249010000	99149000	149860000	381750000	200650000	181100000	1302900000	646310000	656640000	2230400000	1286300000	944100000	12164	2325	11524	74687;74688;74689;74690;74691;74692;74693;74694;74695;74696;74697;74698	101005;101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016;101017;101018	101015			14	
EKPVCGTTYK	2	Unmodified	1181.5751	0.575059	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.67	4.64		2	3					1			1	3	2	9.5021	9.4015	2;3	1.3575E-05	6754	160511_QHF_FH_JSI12i_3	84.479	59.094			0.97611	1.0094	4.7135	5	0	Median	NaN	NaN	NaN	0	0	Median	0.85462	1.0518	NaN	1	0	Median	1.0142	0.97627	6.5173	2	0	Median	0.9851	0.98961	2.7942	2	0	Median	932910000	488850000	444060000	0	0	0	61814000	35474000	26340000	280550000	148010000	132540000	590550000	305370000	285180000	12165	2536	11525	74699;74700;74701;74702;74703;74704	101019;101020;101021;101022;101023;101024;101025;101026	101024			8	
EKPVDLQNFGLR	1	Unmodified	1414.7569	0.75686319	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	3	3	56.726	56.333	2;3	0.00021249	48372	160511_QHF_FH_JSI12i_3	81.565	69.646			1.0097	1.0104	16.793	8	4	Median	0.9094	0.77658	NaN	1	0	Median	1.0264	1.2562	NaN	1	1	Median	1.0438	1.0934	9.4698	3	1	Median	0.88333	0.90691	16.431	3	2	Median	695750000	344300000	351450000	37712000	23224000	14488000	58454000	32509000	25944000	234700000	110650000	124050000	364880000	177910000	186970000	12166	3907	11526	74705;74706;74707;74708;74709;74710;74711;74712	101027;101028;101029;101030;101031;101032	101032			6	
EKPYFPIPEEYTFIQNVPLEDR	1	Unmodified	2723.3483	0.34828376	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.53	1	6	7						2	2	3	6	5	99.629	98.381	2;3	1.4602E-84	89920	160511_QHF_FH_JSI11i_3	263.19	246.69			0.88807	0.92238	9.4123	16	2	Median	1.0065	0.82829	0.34883	2	0	Median	0.76279	0.94332	2.7982	3	0	Median	0.97619	0.96114	12.773	6	2	Median	0.85763	0.8761	8.235	5	0	Median	21994000000	11437000000	10558000000	1445900000	732630000	713280000	3019900000	1702800000	1317100000	12346000000	5955900000	6390300000	5182200000	3045200000	2137000000	12167	2161	11527	74713;74714;74715;74716;74717;74718;74719;74720;74721;74722;74723;74724;74725;74726;74727;74728	101033;101034;101035;101036;101037;101038;101039;101040;101041;101042;101043;101044;101045;101046;101047;101048;101049;101050;101051;101052;101053;101054;101055;101056;101057;101058;101059	101034			27	
EKPYFPIPEEYTFIQNVPLEDRVR	1	Unmodified	2978.5178	0.5178087	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2		By MS/MS			3	0			2								2			100.35	100.18	4	0.00017137	82536	160511_QHF_FH_JSI10i_3	46.578	39.546			1.2968	1.482	1.8809	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2968	1.482	1.8809	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44903000	16665000	28238000	0	0	0	44903000	16665000	28238000	0	0	0	0	0	0	12168	2161	11528	74729;74730	101060;101061;101062	101060			3	
EKQIESSDYDSSSSKGKK	4	3 Acetyl (K)	2127.9808	0.98078729	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	41.652	32.804	3	0.00059072	14869	160513_QHF_FH_JSI10Kac_2	64.2	60.102			0.9003	0.94458	22.417	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67976	0.80612	NaN	1	0	Median	1.1924	1.1068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11236000	4047500	7188400	0	0	0	4726100	2519800	2206300	3258800	1527700	1731100	3251000	0	3251000	12169	5440	11529	74731;74732;74733	101063;101064;101065	101064	3415;3416;3417;3418		3	
EKTVEKKGK	4	3 Acetyl (K)	1171.6449	0.64485312	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	3	0	0	3				By MS/MS	14	0							1						1	35.245	25.926	3	0.048394	15622	160513_QHF_FH_JSI12Kac_4	38.783	14.439			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4879400	4879400	0	0	0	0	0	0	0	0	0	0	4879400	4879400	0	12170	5213	11530	74734	101066	101066			1	
EKYDTDFYILDK	2	Unmodified	1548.7348	0.73479034	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		63.492	62.958	2	0.012135	54741	160511_QHF_FH_JSI11i_2	80.69	61.558			0.78624	0.78125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78624	0.78125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26011000	12751000	13260000	0	0	0	0	0	0	26011000	12751000	13260000	0	0	0	12171	1064	11531	74735	101067	101067			1	
EKYEITEQR	1	Unmodified	1194.5881	0.58806652	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.24		8	3					3		3	2	4	5	16.324	13.861	2;3	9.2852E-05	11151	160511_QHF_FH_JSI12i_3	84.817	73.988			0.88042	0.91965	24.236	13	0	Median	1.5337	1.3046	46.752	3	0	Plateau	0.5645	0.70459	4.8267	2	0	Median	0.89917	0.89698	8.204	4	0	Median	0.9233	0.98333	12.663	4	0	Median	3327200000	1697000000	1630200000	492630000	186520000	306110000	529120000	324910000	204210000	1010000000	499320000	510730000	1295400000	686270000	609140000	12172	2196	11532	74736;74737;74738;74739;74740;74741;74742;74743;74744;74745;74746;74747;74748;74749	101068;101069;101070;101071;101072;101073;101074;101075;101076;101077;101078;101079;101080;101081;101082;101083	101083			16	
EKYEITEQR	1	Acetyl (K)	1236.5986	0.59863121	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	2	1	35.755	27.047	2	1.4746E-05	15870	160513_QHF_FH_JSI11Kac_3	112.75	87.929			0.39346	0.43871	239.21	4	4	Median	NaN	NaN	NaN	0	0	Median	3.6132	4.2294	212.83	2	2	Median	0.081675	0.080681	NaN	1	1	Median	0.1908	0.20496	NaN	1	1	Median	40721000	27754000	12967000	0	0	0	10542000	3827900	6714500	22063000	19132000	2931000	8116100	4794300	3321800	12173	2196	11532	74750;74751;74752;74753;74754	101084;101085;101086;101087;101088	101084	2316		5	
EKYEITEQRK	2	Unmodified	1322.683	0.68302954	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	2.71	0.452		2	5							1	3	1	2	10.688	10.379	3;4	4.3661E-05	7839	160511_QHF_FH_JSI11i_3	81.525	52.567			0.76868	0.78348	22.289	7	0	Median	0.91601	0.78348	NaN	1	0	Median	0.80888	0.94329	10.418	3	0	Median	0.69415	0.67174	NaN	1	0	Median	0.65224	0.65963	23.914	2	0	Median	1322900000	788130000	534790000	76811000	34252000	42559000	677860000	384960000	292900000	479300000	312270000	167040000	88944000	56650000	32294000	12174	2196	11533	74755;74756;74757;74758;74759;74760;74761	101089;101090;101091;101092;101093;101094;101095;101096;101097;101098	101089			10	
EKYEKDIAAYR	2	Acetyl (K)	1426.7092	0.70924429	928;1280	P09429;P26583	HMGB1;HMGB2	High mobility group protein B1;High mobility group protein B2	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								6			2	2	2	45.471	35.287	3	8.0554E-07	19848	160513_QHF_FH_JSI11Kac_5	105.17	91.361			0.50801	0.57472	51.558	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1479	1.3739	NaN	1	0	Median	0.42919	0.42442	3.1088	2	0	Median	0.64833	0.7304	33.9	2	0	Median	54114000	34315000	19799000	0	0	0	9691400	4489200	5202200	31259000	21905000	9353700	13163000	7920000	5243200	12175	928;1280	11534	74762;74763;74764;74765;74766;74767	101099;101100;101101;101102;101103;101104;101105	101100	678;679		7	
EKYIDQEELNK	2	Acetyl (K)	1449.6987	0.69873919	898;880;2870	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.1	0.994					3	3	2	1			3	3	3	49.505	39.852	2	3.3135E-27	21315	160513_QHF_FH_JSI10Kac_3	186.81	140.35			0.4503	0.49001	60.618	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0205	1.2096	12.595	3	0	Median	0.38859	0.37627	2.1713	2	0	Median	0.44523	0.48448	1.6052	2	0	Median	470200000	285800000	184400000	0	0	0	125650000	54988000	70660000	210410000	147970000	62437000	134150000	82841000	51307000	12176	898;880;2870	11535	74768;74769;74770;74771;74772;74773;74774;74775;74776	101106;101107;101108;101109;101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122	101118	601;602		17	
EKYIDQELNK	2	Unmodified	1278.6456	0.6455814	2871	Q58FG0	HSP90AA5P	Putative heat shock protein HSP 90-alpha A5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.264	23.246	3	0.045037	19146	160511_QHF_FH_JSI12i_3	32.008	14.414			2.0279	2.1	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0279	2.1	NaN	1	1	Median	22615000	9828400	12787000	0	0	0	0	0	0	0	0	0	22615000	9828400	12787000	12177	2871	11536	74777	101123	101123			1	
EKYLNVSR	1	Acetyl (K)	1049.5506	0.55055881	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			39.936	30.115	2	0.057743	17415	160513_QHF_FH_JSI10Kac_4	52.549	27.605			12.16	14.332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12.16	14.332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3837500	154870	3682700	0	0	0	3837500	154870	3682700	0	0	0	0	0	0	12178	323	11537	74778	101124	101124			1	
EKYLTVQNTVR	1	Acetyl (K)	1391.7409	0.74087877	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.781						2	3	3		1	3	1	3	54.09	43.824	2	3.8597E-09	24272	160513_QHF_FH_JSI10Kac_4	124.67	79.915			1.0221	1.1164	67.917	7	1	Median	7.9574	6.7442	NaN	1	1	Median	0.94079	1.1143	0.26993	2	0	Median	1.1005	1.078	NaN	1	0	Median	1.0221	1.1348	6.0957	3	0	Median	62732000	29171000	33560000	1646300	122220	1524100	24552000	11217000	13335000	14722000	7224000	7498300	21811000	10608000	11203000	12179	5552	11538	74779;74780;74781;74782;74783;74784;74785;74786	101125;101126;101127;101128;101129;101130;101131;101132;101133;101134;101135;101136;101137	101127	3486		13	
EKYSLVEAK	2	Acetyl (K)	1107.5812	0.58119023	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		46.771	37.128	2	0.0064653	21660	160513_QHF_FH_JSI11Kac_4	70.028	30.724			0.33102	0.32984	60.269	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80243	0.94999	NaN	1	0	Median	0.33212	0.33458	2.0176	2	0	Median	NaN	NaN	NaN	0	0	Median	17376000	12179000	5197900	0	0	0	3106500	1666100	1440400	14270000	10513000	3757500	0	0	0	12180	1085	11539	74787;74788;74789	101138;101139;101140	101140	934		3	
ELAACQLR	0	Unmodified	959.48585	0.48585006	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.922	24.116	2	0.0023888	20075	160511_QHF_FH_JSI11i_2	80.462	27.826			1.0767	1.1416	11.535	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0657	1.0522	NaN	1	0	Median	1.0877	1.2386	NaN	1	0	Median	127780000	62815000	64963000	0	0	0	0	0	0	80909000	39994000	40915000	46868000	22821000	24047000	12181	1400	11540	74790;74791	101141;101142;101143	101142			3	
ELAAEDEQVFLMK	1	Unmodified	1521.7385	0.73849551	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		72.092	71.453	2	8.7513E-05	63467	160511_QHF_FH_JSI9i_1	162.26	118.95			1.4197	1.285	1.4126	2	2	Median	1.5601	1.2979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2919	1.2722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	296640000	126370000	170270000	116170000	47125000	69046000	0	0	0	180470000	79242000	101220000	0	0	0	12182	312	11541	74792;74793	101144;101145	101145			2	
ELAAEVEVQDGPNEDGEMFMRPGK	1	Unmodified	2647.1894	0.18941663	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	2	3	4	69.874	69.334	3	3.2356E-63	61508	160511_QHF_FH_JSI10i_2	229.1	222			1.0432	1.0992	11.194	10	2	Median	1.1011	0.96981	NaN	1	0	Median	0.94437	1.1509	5.0057	2	0	Median	1.0573	1.1079	8.4923	3	0	Plateau	0.99278	1.0748	15.916	4	2	Median	1073400000	527880000	545530000	127530000	51034000	76493000	301630000	158340000	143290000	348990000	172220000	176760000	295260000	146280000	148990000	12183	905	11542	74794;74795;74796;74797;74798;74799;74800;74801;74802;74803	101146;101147;101148;101149;101150;101151;101152;101153;101154;101155;101156;101157;101158;101159;101160;101161;101162;101163;101164	101162			19	
ELAAGAFGTK	1	Unmodified	963.50255	0.50254598	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.998	33.661	2	0.017306	28785	160511_QHF_FH_JSI12i_2	50.034	19.33			1.3244	1.4728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3244	1.4728	NaN	1	1	Median	88488000	44076000	44412000	0	0	0	0	0	0	0	0	0	88488000	44076000	44412000	12184	2540	11543	74804	101165	101165			1	
ELAAIAFVK	1	Unmodified	960.56442	0.56441796	3005	Q5W0V3;Q86V87	FAM160B1;FAM160B2	Protein FAM160B1;Protein FAM160B2	yes	no	0	0	0	0			By MS/MS	By MS/MS	15	0								2				1	1	76.689	66.112	2	0.016555	35178	160513_QHF_FH_JSI11Kac_5	50.127	32.887			0.63122	0.65575	11.691	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72509	0.71226	NaN	1	0	Median	0.5495	0.60372	NaN	1	1	Median	6356100	2979900	3376300	0	0	0	0	0	0	5052000	2303100	2748900	1304200	676820	627360	12185	3005	11544	74805;74806	101166;101167	101166			2	
ELAALFYSVVVSTVSGNELK	1	Unmodified	2125.1307	0.13068641	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	99.719	90.381	3	4.6971E-05	49721	160513_QHF_FH_JSI12Kac_6	110.77	93.748			0.98867	0.93935	46.776	2	2	Median	1.5302	1.3076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63878	0.67481	NaN	1	1	Median	221050000	92037000	129010000	103880000	58843000	45033000	0	0	0	64027000	0	64027000	53143000	33194000	19949000	12186	2997	11545	74807;74808;74809	101168;101169;101170	101170			3	
ELAALPK	1	Unmodified	740.44324	0.44324019	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.623	7	6	1							3	4	4	3	32.223	31.508	2	0.0057781	28222	160511_QHF_FH_JSI11i_1	97.071	44.388			0.81497	0.77833	92.938	14	12	Median	1.1901	0.98457	104.84	3	1	Median	0.85504	1.0359	76.037	4	4	Median	0.81511	0.8025	123.82	4	4	Median	0.55807	0.6153	108.42	3	3	Median	6156300000	3349800000	2806500000	1120500000	640050000	480460000	1832000000	974630000	857360000	1869100000	985080000	884060000	1334600000	750000000	584640000	12187	3968	11546	74810;74811;74812;74813;74814;74815;74816;74817;74818;74819;74820;74821;74822;74823	101171;101172;101173;101174;101175;101176;101177;101178;101179;101180;101181;101182;101183;101184;101185;101186;101187;101188;101189;101190	101172			20	
ELAAQLNEEAK	1	Unmodified	1214.6143	0.61428128	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.91	6		1			2				2	4	1	2	34.005	31.31	2	1.2267E-37	28351	160511_QHF_FH_JSI12i_1	198.72	150.87			0.8575	0.95483	61.182	8	5	Median	1.2569	1.0404	113.95	2	2	Median	0.86195	1.0201	51.105	3	2	Median	0.38146	0.37181	NaN	1	1	Median	0.881	0.95483	6.3503	2	0	Median	1532000000	793580000	738410000	430460000	193510000	236950000	550820000	305480000	245340000	259460000	141020000	118440000	291250000	153570000	137680000	12188	5658	11547	74824;74825;74826;74827;74828;74829;74830;74831;74832	101191;101192;101193;101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204	101196			14	
ELADESQTLK	1	Unmodified	1132.5612	0.56118307	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	24.742	24.191	2	1.5386E-05	21167	160511_QHF_FH_JSI10i_1	100.25	45.634			0.92539	0.90076	22.102	5	2	Median	0.94341	0.78701	NaN	1	0	Median	0.75198	0.91189	NaN	1	0	Median	0.92539	0.90076	NaN	1	0	Median	0.97165	1.019	38.686	2	2	Median	1162400000	582060000	580350000	210880000	101500000	109380000	287330000	182250000	105070000	264270000	106730000	157540000	399930000	191580000	208350000	12189	5453	11548	74833;74834;74835;74836;74837;74838	101205;101206;101207;101208;101209;101210;101211;101212;101213;101214;101215	101211			11	
ELADLPQNK	1	Unmodified	1026.5346	0.53457439	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.757	28.484	2	4.961E-05	24732	160511_QHF_FH_JSI9i_1	117.04	69.187			2.155	1.752	NaN	1	1	Median	2.155	1.752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55170000	21741000	33429000	55170000	21741000	33429000	0	0	0	0	0	0	0	0	0	12190	5113	11549	74839	101216	101216			1	
ELAEAASKWAAEK	2	Acetyl (K)	1444.7198	0.71980898	3644	Q8NEY8	PPHLN1	Periphilin-1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	64.659	53.952	2	6.3571E-06	29875	160513_QHF_FH_JSI12Kac_4	112.15	83.749			0.31997	0.35672	19.179	2	2	Median	NaN	NaN	NaN	0	0	Median	0.34653	0.40853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29545	0.31148	NaN	1	1	Median	6804900	4885300	1919700	0	0	0	3970800	2801900	1169000	0	0	0	2834100	2083400	750720	12191	3644	11550	74840;74841	101217;101218	101218	2900		2	
ELAEAVAGGR	0	Unmodified	971.50361	0.50360861	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	3	3					3			2	2	2	3	24.671	20.919	2	0.00011159	17436	160511_QHF_FH_JSI12i_2	84.615	38.897			0.91431	1.0315	16.772	8	3	Median	1.8933	1.5465	NaN	1	1	Median	0.85732	1.034	0.26758	2	0	Median	1.0088	0.99721	6.2646	2	1	Median	0.866	0.94316	7.1513	3	1	Median	1350100000	706470000	643640000	309660000	119350000	190310000	93005000	49869000	43136000	468140000	253730000	214410000	479310000	283530000	195780000	12192	5254	11551	74842;74843;74844;74845;74846;74847;74848;74849;74850	101219;101220;101221;101222;101223;101224;101225;101226;101227;101228;101229	101221			11	
ELAEDDSILK	1	Unmodified	1131.5659	0.5659341	1879	P56385	ATP5I	ATP synthase subunit e, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	48.163	44.629	2	1.2584E-07	39378	160511_QHF_FH_JSI9i_1	120.99	84.288			1.1037	1.0773	9.5658	6	1	Linear	1.3613	1.1233	NaN	1	0	Median	1.0151	1.1981	13.543	2	1	Median	1.0507	1.004	NaN	1	0	Median	1.12	1.2099	0.056398	2	0	Median	3511600000	1521800000	1989800000	743270000	232380000	510890000	1018300000	478210000	540100000	1026200000	448120000	578040000	723810000	363090000	360730000	12193	1879	11552	74851;74852;74853;74854;74855;74856	101230;101231;101232;101233;101234;101235;101236;101237;101238;101239;101240	101236			11	
ELAEDGYSGVEVR	0	Unmodified	1422.6627	0.66268803	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.56	11	2	3			3	2		1	5	5	4	8	45.371	41.68	2	1.422E-135	37142	160511_QHF_FH_JSI9i_1	293.88	269.04			0.87107	0.94563	32.5	16	5	Median	1.473	1.2174	60.274	3	2	Median	0.84798	1.0151	8.4962	5	1	Median	0.85822	0.83482	6.6118	3	1	Plateau	0.88411	0.93969	42.67	5	1	Median	11144000000	5642300000	5501600000	2292500000	1150200000	1142300000	2627600000	1378000000	1249700000	3039300000	1477100000	1562200000	3184500000	1637100000	1547400000	12194	1227	11553	74857;74858;74859;74860;74861;74862;74863;74864;74865;74866;74867;74868;74869;74870;74871;74872;74873;74874;74875;74876;74877;74878	101241;101242;101243;101244;101245;101246;101247;101248;101249;101250;101251;101252;101253;101254;101255;101256;101257;101258;101259;101260;101261;101262;101263;101264;101265;101266;101267;101268;101269;101270;101271;101272;101273;101274;101275;101276;101277	101267			37	
ELAEQGEPDSSTLSLAEK	1	Unmodified	1902.9058	0.90583143	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.851	53.186	2	1.9814E-06	48349	160511_QHF_FH_JSI12i_1	106.32	74.48			0.56765	0.5709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56765	0.5709	NaN	1	1	Median	24901000	12673000	12228000	0	0	0	0	0	0	0	0	0	24901000	12673000	12228000	12195	693	11554	74879	101278	101278			1	
ELAEQKATEK	2	Acetyl (K)	1187.6034	0.60338224	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		25.261	17.697	2	0.0028181	11040	160513_QHF_FH_JSI11Kac_3	77.379	43.126			0.51209	0.54959	96.625	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92154	1.0883	NaN	1	0	Median	0.28457	0.27753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12260000	8375600	3884500	0	0	0	2994800	1713400	1281400	9265300	6662200	2603200	0	0	0	12196	2780	11555	74880;74881	101279;101280;101281;101282	101280	2681		4	
ELAEQLGLSTGEK	1	Unmodified	1373.7038	0.70382456	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.43	5	1	3			5				2	4	3	5	55.279	50.645	2	2.1981E-66	45523	160511_QHF_FH_JSI10i_1	227.81	169.21			0.89256	0.86965	43.224	9	5	Median	0.83124	0.67467	NaN	1	1	Median	0.67624	0.80068	28.544	3	1	Median	1.4203	1.3788	65.18	2	1	Median	0.9523	1.0199	50.349	3	2	Median	1364000000	825710000	538310000	269830000	148650000	121180000	423740000	258060000	165690000	386930000	220110000	166820000	283520000	198890000	84626000	12197	570	11556	74882;74883;74884;74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895	101283;101284;101285;101286;101287;101288;101289;101290;101291;101292;101293;101294;101295;101296;101297;101298;101299;101300;101301;101302;101303	101296			21	
ELAEQTLNNIK	1	Unmodified	1271.6721	0.67213051	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.319	43.653	2	7.6716E-13	39341	160511_QHF_FH_JSI11i_1	142.36	96.389			0.83817	0.84111	17.946	4	0	Median	0.79946	0.66907	NaN	1	0	Median	0.87161	1.0382	NaN	1	0	Median	0.85726	0.83984	NaN	1	0	Median	0.8195	0.84238	NaN	1	0	Median	756180000	409990000	346190000	146500000	74093000	72403000	182440000	103500000	78937000	254630000	135480000	119140000	172620000	96909000	75708000	12198	3828	11557	74896;74897;74898;74899	101304;101305;101306;101307;101308;101309	101304			6	
ELAESDFASTFR	0	Unmodified	1371.6307	0.63065962	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	2	3	62.743	60.873	2	8.4254E-07	52155	160511_QHF_FH_JSI12i_2	102.52	91.694			0.87356	0.91646	12.996	9	1	Median	1.0989	0.93005	29.055	2	0	Median	0.84382	0.98909	8.3091	3	0	Median	1.0012	0.98628	13.383	2	0	Median	0.82112	0.89027	3.0913	2	1	Median	831500000	435050000	396440000	156480000	63379000	93100000	219220000	132750000	86465000	211860000	105270000	106590000	243940000	133650000	110290000	12199	5261	11558	74900;74901;74902;74903;74904;74905;74906;74907;74908;74909	101310;101311;101312;101313;101314;101315;101316;101317;101318;101319;101320;101321	101312			12	
ELAETEPK	1	Unmodified	915.45493	0.45492709	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.148	12.725	2	8.9641E-05	10504	160511_QHF_FH_JSI12i_1	131.03	94.846			1.4457	1.5643	12.856	4	3	Median	2.1721	1.7686	NaN	1	1	Median	1.4472	1.6738	NaN	1	1	Median	1.3672	1.3326	NaN	1	1	Median	1.4443	1.4619	NaN	1	0	Median	608750000	262570000	346180000	134020000	47017000	87001000	165300000	78324000	86980000	126300000	47862000	78441000	183120000	89365000	93756000	12200	5479	11559	74910;74911;74912;74913	101322;101323;101324;101325	101323			4	
ELAETEPKFNSVK	2	Acetyl (K)	1532.7722	0.77223848	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		59.085	49.566	2	0.00028352	26309	160513_QHF_FH_JSI11Kac_3	96.847	34.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2171800	2171800	0	0	0	0	1003500	1003500	0	1168300	1168300	0	0	0	0	12201	5479	11560	74914;74915	101326;101327	101326	3441		2	
ELAETIAADDGTDPR	0	Unmodified	1572.7267	0.72674485	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.942	40.305	2	4.5579E-10	36552	160511_QHF_FH_JSI12i_1	151.1	130.23			1.2222	1.3535	31.954	4	3	Median	1.0711	0.87031	NaN	1	1	Median	1.3332	1.5882	NaN	1	1	Median	1.7983	1.7577	NaN	1	1	Median	1.1204	1.1534	NaN	1	0	Median	228410000	101220000	127190000	35269000	19123000	16146000	55031000	28865000	26167000	85989000	24561000	61428000	52125000	28671000	23453000	12202	485	11561	74916;74917;74918;74919	101328;101329;101330;101331	101329			4	
ELAETLQQK	1	Unmodified	1058.5608	0.56078914	3045	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	2	2	26.583	24.755	2	0.00040066	21969	160511_QHF_FH_JSI12i_1	91.069	25.822			1.3038	1.3389	66.476	7	7	Median	1.0442	0.8588	95.005	2	2	Median	1.4703	1.7651	NaN	1	1	Median	1.3851	1.3573	33.175	2	2	Median	0.68216	0.70153	91.405	2	2	Median	1006000000	478940000	527060000	364960000	164180000	200780000	127260000	56362000	70898000	134390000	60786000	73604000	379390000	197600000	181780000	12203	3045	11562	74920;74921;74922;74923;74924;74925;74926	101332;101333;101334;101335;101336;101337;101338	101333			7	
ELAETYESK	1	Unmodified	1068.4975	0.49752018	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	18.97	18.669	2	0.013585	15977	160511_QHF_FH_JSI11i_1	56.258	32.103			3.2034	3.2475	31.556	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6831	2.598	NaN	1	1	Median	3.8247	4.0593	NaN	1	1	Median	57230000	23807000	33424000	0	0	0	0	0	0	35142000	14833000	20309000	22088000	8973900	13115000	12204	4765	11563	74927;74928	101339;101340	101339			2	
ELAFFANALEEVSIETIEAGFMTK	1	Unmodified	2659.3091	0.30912106	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS		13.5	2.5				1					1	1		1		102.57	93.38	3	1.0942E-13	34087	160513_QHF_FH_JSI11Kac_1	101.5	89.062			0.95895	0.8213	NaN	1	1	Median	0.95895	0.8213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22320000	13802000	8517600	22320000	13802000	8517600	0	0	0	0	0	0	0	0	0	12205	576	11564	74929;74930	101341;101342	101341			2	
ELAFQISK	1	Unmodified	934.51238	0.51238239	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.01	5	4	3				3	3		2	4	6	6	55.691	51.178	1;2	0.00055359	44884	160511_QHF_FH_JSI9i_2	104.44	64.791			0.93981	0.94445	17.049	16	3	Median	1.0623	0.89069	18.494	2	0	Median	0.86359	1.0123	14.251	4	0	Median	0.9242	0.91046	11.112	5	1	Median	0.9379	1.004	25.189	5	2	Median	4505700000	2255600000	2250100000	689990000	326750000	363240000	604510000	302850000	301660000	1355500000	696130000	659420000	1855600000	929850000	925760000	12206	2474;97	11565	74931;74932;74933;74934;74935;74936;74937;74938;74939;74940;74941;74942;74943;74944;74945;74946;74947;74948	101343;101344;101345;101346;101347;101348;101349;101350;101351;101352;101353;101354;101355;101356;101357;101358;101359;101360;101361;101362;101363	101356			21	
ELAGAHR	0	Unmodified	752.39294	0.39293595	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.4	0.49		3	2							1	1		3	4.78	4.4601	2	0.0049865	2111	160511_QHF_FH_JSI12i_3	84.025	63.04			0.97625	1.1204	40.714	4	1	Median	1.4427	1.2429	NaN	1	0	Median	0.83487	1.0105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76342	0.80841	60.762	2	1	Median	417730000	225960000	191770000	107660000	45615000	62042000	142770000	75331000	67436000	0	0	0	167300000	105010000	62292000	12207	5205	11566	74949;74950;74951;74952;74953	101364;101365;101366;101367	101367			4	
ELAGALAYIMDNK	1	Unmodified	1407.7068	0.70680145	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	90.24	90.003	2;3	7.1102E-82	78242	160511_QHF_FH_JSI12i_3	243.13	226.11			0.60466	0.74873	84.009	5	3	Median	2.8983	2.5791	NaN	1	1	Median	0.60466	0.74873	NaN	1	0	Median	0.28106	0.27017	NaN	1	1	Median	0.73233	0.76744	51.696	2	1	Median	152910000	83327000	69586000	4912400	1189700	3722600	31537000	15626000	15910000	7833400	6612700	1220600	108630000	59898000	48733000	12208	2540	11567	74954;74955;74956;74957;74958;74959;74960;74961	101368;101369;101370;101371;101372;101373;101374;101375;101376	101375			9	
ELAGGLEDGEPQQK	1	Unmodified	1469.6998	0.69980182	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	33.529	31.318	2	2.1593E-21	28086	160511_QHF_FH_JSI12i_1	174.84	139.61			0.90559	0.89075	12.648	5	1	Median	0.91227	0.76029	NaN	1	0	Median	0.88821	1.0608	NaN	1	0	Median	0.90559	0.89075	NaN	1	0	Median	0.85254	0.89131	9.1956	2	1	Median	498070000	256590000	241480000	117830000	51451000	66378000	130760000	69409000	61354000	116580000	62482000	54094000	132900000	73253000	59651000	12209	4348	11568	74962;74963;74964;74965;74966;74967;74968	101377;101378;101379;101380;101381;101382;101383;101384;101385;101386	101379			10	
ELAGIVCTLNSENK	1	Unmodified	1546.7661	0.76610725	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	61.635	61.008	2	3.7683E-10	52135	160511_QHF_FH_JSI12i_2	111.63	74.074			0.65776	0.65459	69.649	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65776	0.65459	69.649	2	2	Median	NaN	NaN	NaN	0	0	Median	42313000	28495000	13819000	0	0	0	8926100	8926100	0	33387000	19569000	13819000	0	0	0	12210	5107	11569	74969;74970;74971;74972;74973	101387;101388;101389;101390;101391	101387			5	
ELAILLGMLDPAEK	1	Unmodified	1511.8269	0.82691659	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	6.19	3	8	3						5	4	5	6	4	100.99	99.156	2;3	1.6872E-40	90768	160511_QHF_FH_JSI10i_2	208.74	155.95			1.0743	1.1393	128.88	16	6	Median	1.1607	0.98289	175.17	4	2	Median	1.7222	2.1026	145.08	4	2	Linear	1.3521	1.3083	25.89	5	1	Median	0.86224	0.95566	124.8	3	1	Plateau	10719000000	5661700000	5057700000	1737400000	967070000	770310000	2606700000	1749200000	857480000	3342000000	1744400000	1597600000	3033300000	1201000000	1832400000	12211	1333	11570	74974;74975;74976;74977;74978;74979;74980;74981;74982;74983;74984;74985;74986;74987;74988;74989;74990;74991;74992	101392;101393;101394;101395;101396;101397;101398;101399;101400;101401;101402;101403;101404;101405;101406;101407;101408;101409;101410;101411;101412;101413;101414;101415;101416;101417	101410			26	
ELAILLGMLDPAEK	1	Oxidation (M)	1527.8218	0.82183121	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.35		15						1	1	1	4	5	7	97.789	96.798	2;3	0.0011001	86767	160511_QHF_FH_JSI10i_2	69.979	54.713			2.3371	2.1925	165.53	10	10	Median	2.5816	2.1768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42182	0.41015	205.13	3	3	Plateau	1.9432	2.1148	173.33	6	6	Median	92403000	48046000	44356000	7686800	1261800	6425000	6016300	6016300	0	22769000	11421000	11347000	55931000	29347000	26584000	12212	1333	11570	74993;74994;74995;74996;74997;74998;74999;75000;75001;75002;75003;75004;75005;75006;75007;75008;75009	101418;101419;101420;101421;101422;101423;101424;101425;101426;101427;101428;101429;101430;101431;101432;101433;101434;101435	101433		976	18	
ELALALQEALEPAVR	0	Unmodified	1621.9039	0.90392136	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	96.452	96.094	2;3	0.00027041	84323	160511_QHF_FH_JSI11i_2	104.17	92.855			0.7624	0.73521	61.321	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7624	0.73521	NaN	1	0	Median	0.37943	0.41249	72.758	2	2	Median	32252000	18769000	13483000	0	0	0	0	0	0	17339000	8056700	9282600	14913000	10712000	4200300	12213	2921	11571	75010;75011;75012	101436;101437;101438	101438			3	
ELALGQDR	0	Unmodified	900.46649	0.46649483	1336	P30046;A6NHG4	DDT;DDTL	D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.18	4	4	2				3			4	3	3	3	25.306	22.531	2	0.00014127	19572	160511_QHF_FH_JSI9i_1	125.58	72.421			0.97357	1.0205	19.505	13	2	Median	1.1725	0.98437	31.405	4	2	Median	0.9248	1.1067	19.349	3	0	Median	0.96811	0.9784	5.5803	3	0	Plateau	0.99148	1.0541	4.6853	3	0	Plateau	6345900000	3138400000	3207500000	1354100000	579110000	774950000	1668000000	905090000	762940000	1788700000	899970000	888760000	1535100000	754260000	780820000	12214	1336	11572	75013;75014;75015;75016;75017;75018;75019;75020;75021;75022;75023;75024;75025	101439;101440;101441;101442;101443;101444;101445;101446;101447;101448;101449;101450;101451;101452;101453;101454;101455;101456;101457;101458;101459;101460;101461	101453			23	
ELALGSNK	1	Unmodified	830.44978	0.44978213	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		27.19	19.321	2	0.041153	12209	160513_QHF_FH_JSI11Kac_4	45.738	6.4403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12215	1029	11573	75026	101462	101462			1	
ELALNTAQFAK	1	Unmodified	1204.6452	0.64518747	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.253	56.75	2	0.00011388	49137	160511_QHF_FH_JSI11i_2	96.342	58.784			1.0314	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0314	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61541000	37031000	24510000	0	0	0	0	0	0	61541000	37031000	24510000	0	0	0	12216	2448	11574	75027	101463	101463			0	
ELALPGELTQSR	0	Unmodified	1312.6987	0.69867961	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	64.36	61.618	2	1.0276E-05	54574	160511_QHF_FH_JSI10i_2	118.4	84.443			0.92058	0.97713	7.232	10	0	Median	1.1159	0.93214	14.471	2	0	Median	0.7654	0.92701	6.3258	3	0	Plateau	1.0289	1.023	5.9801	2	0	Median	0.88838	0.94631	5.3497	3	0	Plateau	2488700000	1298500000	1190200000	522060000	248870000	273190000	715050000	406590000	308450000	753610000	377770000	375840000	497950000	265270000	232680000	12217	525	11575	75028;75029;75030;75031;75032;75033;75034;75035;75036;75037	101464;101465;101466;101467;101468;101469;101470;101471;101472;101473;101474;101475;101476;101477;101478;101479	101479			16	
ELALQITK	1	Unmodified	914.54368	0.54368251	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	49.041	48.258	2	0.0046684	41662	160511_QHF_FH_JSI12i_2	67.993	8.7475			1.0898	1.2114	17.356	5	2	Median	1.4986	1.2653	NaN	1	0	Median	1.2572	1.4727	NaN	1	1	Median	0.97699	1.0029	11.386	2	1	Median	1.0898	1.2114	NaN	1	0	Median	1410900000	726930000	683980000	53064000	22921000	30143000	83603000	40491000	43112000	1185500000	615800000	569750000	88694000	47721000	40973000	12218	3216	11576	75038;75039;75040;75041;75042	101480;101481;101482;101483;101484	101480			5	
ELALQPK	1	Unmodified	797.4647	0.46470391	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	1	1	2	28.923	26.79	2	0.010327	23932	160511_QHF_FH_JSI12i_1	75.311	20.785			0.88932	0.87776	43.487	6	1	Median	1.4747	1.2463	66.579	2	0	Median	0.78918	0.91778	NaN	1	0	Median	0.86945	0.83948	NaN	1	0	Median	0.66757	0.71733	43.108	2	1	Median	1461100000	779530000	681560000	390180000	176320000	213860000	368220000	231160000	137070000	333800000	186490000	147320000	368880000	185570000	183310000	12219	1519	11577	75043;75044;75045;75046;75047;75048	101485;101486;101487;101488;101489;101490	101487			6	
ELALQQEEGK	1	Unmodified	1143.5772	0.57716749	5498	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.205	26.657	2	0.0035049	23784	160511_QHF_FH_JSI12i_1	69.375	38.301			0.91084	0.94358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91084	0.94358	NaN	1	1	Median	52804000	32655000	20149000	0	0	0	0	0	0	0	0	0	52804000	32655000	20149000	12220	5498	11578	75049	101491	101491			1	
ELALQTLK	1	Unmodified	914.54368	0.54368251	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	47.349	46.814	2	0.010155	42076	160511_QHF_FH_JSI11i_1	55.37	7.5012			0.85757	0.85998	3.5812	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87103	0.83847	NaN	1	0	Median	0.84432	0.88203	NaN	1	0	Median	461400000	236870000	224530000	0	0	0	0	0	0	306600000	143970000	162630000	154790000	92891000	61902000	12221	3720	11579	75050;75051	101492	101492			1	
ELALQTLKFTK	2	Acetyl (K)	1332.7653	0.76530261	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		82.033	71.563	2	2.3535E-07	37906	160513_QHF_FH_JSI11Kac_5	113.47	75.997			1.4471	1.5383	3.5198	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3708	1.5771	NaN	1	1	Median	1.5276	1.5005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6448500	2196000	4252500	0	0	0	1341900	559190	782750	5106600	1636800	3469800	0	0	0	12222	3720	11580	75052;75053	101493;101494	101493	2918		2	
ELALSALLK	1	Unmodified	956.59063	0.59063271	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.663	81.81	2	0.0092336	71808	160511_QHF_FH_JSI11i_2	60.436	31.287			0.91426	0.94436	2.0752	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98428	0.95832	NaN	1	1	Median	0.84922	0.93061	NaN	1	0	Median	32165000	17537000	14628000	0	0	0	0	0	0	9727000	4139200	5587800	22438000	13398000	9040600	12223	4471	11581	75054;75055	101495;101496;101497	101497			3	
ELAMPGEDLK	1	Oxidation (M)	1117.5325	0.53252548	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	32.856	27.004	2	9.8148E-10	27489	160511_QHF_FH_JSI11i_1	138.4	105.79			0.97519	0.9858	3.3866	8	0	Median	1.1496	0.93802	3.2367	2	0	Median	0.85919	1.0051	3.3359	2	0	Median	1.0155	0.98225	1.1021	2	0	Median	0.94597	0.9967	0.7008	2	0	Median	570440000	301250000	269180000	133580000	71316000	62265000	167860000	93619000	74237000	113410000	61745000	51669000	155590000	74573000	81015000	12224	1658	11582	75056;75057;75058;75059;75060;75061;75062;75063	101498;101499;101500;101501;101502;101503;101504;101505;101506;101507	101499		1340	10	
ELAMPGEDLK	1	Unmodified	1101.5376	0.53761086	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	4	2	2	55.84	50.025	2	2.0955E-09	44383	160511_QHF_FH_JSI9i_1	130.75	86.301			1.023	1.0594	26.091	9	2	Median	1.1932	0.9501	NaN	1	0	Median	0.93648	1.0952	18.728	4	1	Median	1.0022	0.97324	3.9146	2	0	Median	1.4183	1.5192	43.661	2	1	Median	5529400000	2967600000	2561800000	1195000000	578830000	616210000	1449300000	887770000	561530000	1344500000	690570000	653940000	1540600000	810470000	730120000	12225	1658	11582	75064;75065;75066;75067;75068;75069;75070;75071;75072	101508;101509;101510;101511;101512;101513;101514;101515;101516;101517;101518;101519;101520;101521;101522;101523;101524;101525;101526;101527;101528;101529	101525			22	
ELAMQTFGVLK	1	Unmodified	1235.6584	0.6583947	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		1	1	5	1	76.964	73.5	2	1.9214E-10	64734	160511_QHF_FH_JSI12i_2	140.45	112.24			0.71617	0.71092	26.697	7	4	Median	0.6004	0.51988	NaN	1	1	Median	0.7451	0.87705	NaN	1	0	Median	0.85566	0.8467	25.174	4	3	Median	0.56311	0.6267	NaN	1	0	Median	311880000	188780000	123100000	56273000	35795000	20479000	3530000	2031000	1499000	163950000	96333000	67621000	88122000	54620000	33502000	12226	5042	11583	75073;75074;75075;75076;75077;75078;75079;75080	101530;101531;101532;101533;101534;101535;101536;101537	101532			8	
ELANQVSK	1	Unmodified	887.47125	0.47124585	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.921	10.537	2	0.00069356	8269	160511_QHF_FH_JSI11i_1	99.802	53.376			0.85635	1.0506	10.539	4	0	Linear	1.1734	0.95445	NaN	1	0	Median	0.93946	1.1353	NaN	1	0	Median	1.2198	1.173	NaN	1	0	Median	0.9126	0.97224	NaN	1	0	Median	2546900000	1172200000	1374700000	626370000	250510000	375860000	634810000	318690000	316120000	602200000	289870000	312330000	683510000	313090000	370420000	12227	4940	11584	75081;75082;75083;75084	101538;101539;101540;101541;101542;101543	101539			6	
ELANSPDCPQMCAYK	1	Unmodified	1782.7375	0.73752601	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.195	40.74	2	1.1373E-14	36976	160511_QHF_FH_JSI12i_1	160.15	148.28			1.0628	1.114	43.125	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.64108	0.73444	NaN	1	1	Median	0.48685	0.4703	NaN	1	1	Median	1.0628	1.114	NaN	1	0	Median	91664000	55659000	36006000	0	0	0	26634000	19803000	6831700	19271000	14136000	5134700	45759000	21720000	24039000	12228	1636	11585	75085;75086;75087	101544;101545;101546;101547	101545			4	
ELAPAVSVLQLFCSSPK	1	Unmodified	1844.9706	0.97062071	5708;5234	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	no	no	0	0	0	0			By MS/MS	By MS/MS	6	5.79		1	2						1			2	2	101.9	101.86	3	9.419E-13	88620	160511_QHF_FH_JSI12i_3	125.52	107.82			1.3321	1.3352	53.566	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62181	0.60382	35.733	2	1	Median	1.3321	1.3684	NaN	1	0	Median	528560000	255360000	273210000	0	0	0	0	0	0	244300000	135740000	108570000	284260000	119620000	164640000	12229	5708;5234	11586	75088;75089;75090;75091	101548;101549;101550;101551	101550			4	
ELAPEPWVER	0	Unmodified	1224.6139	0.61388734	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	55.773	54.808	2	0.0076175	47083	160511_QHF_FH_JSI12i_2	60.91	31.823			1.06	1.1961	11.866	5	5	Median	1.2959	1.1108	15.408	2	2	Median	0.96469	1.1961	NaN	1	1	Median	0.9663	0.95997	NaN	1	1	Median	1.06	1.1988	NaN	1	1	Median	313540000	146550000	166990000	100230000	48056000	52174000	48064000	22710000	25354000	100540000	43624000	56920000	64704000	32164000	32540000	12230	4428	11587	75092;75093;75094;75095;75096	101552;101553;101554;101555;101556	101552			5	
ELAPLFEELR	0	Unmodified	1215.6499	0.6499385	5292	Q9UHA4	LAMTOR3	Ragulator complex protein LAMTOR3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	85.473	84.663	2	1.1389E-05	74378	160511_QHF_FH_JSI11i_2	103.7	51.846			0.97026	1.0467	10.562	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1141	1.1279	NaN	1	0	Median	0.84499	0.97138	NaN	1	0	Median	177520000	83277000	94245000	0	0	0	0	0	0	111510000	52207000	59301000	66013000	31070000	34944000	12231	5292	11588	75097;75098	101557;101558;101559	101559			3	
ELAPLQELIEK	1	Unmodified	1281.718	0.71801807	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	2	3	3	85.906	85.366	2	4.0447E-07	75128	160511_QHF_FH_JSI9i_2	117.67	70.486			0.87786	0.9071	36.613	10	5	Median	1.4631	1.2086	68.777	2	1	Median	0.73944	0.89107	0.09663	2	0	Median	0.87477	0.84805	27.641	3	2	Median	0.90608	0.96169	45.155	3	2	Median	609030000	309240000	299790000	83057000	34743000	48314000	148070000	83683000	64387000	240040000	122430000	117610000	137860000	68383000	69478000	12232	4788	11589	75099;75100;75101;75102;75103;75104;75105;75106;75107;75108	101560;101561;101562;101563;101564;101565;101566;101567;101568;101569;101570	101568			11	
ELAPYDENWFYTR	0	Unmodified	1702.7627	0.76273643	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.93	4.57	3	5	4					2		2	4	4	4	80.489	78.402	2	2.0345E-22	70735	160511_QHF_FH_JSI10i_2	179.19	125.13			0.98332	1.1703	15.459	14	1	Linear	1.1792	0.98778	7.8056	2	1	Median	0.8487	0.98392	9.2793	4	0	Median	1.0953	1.0816	6.274	4	0	Linear	1.1003	1.1802	28.106	4	0	Linear	7621900000	3860900000	3761000000	917980000	428210000	489770000	2219500000	1239300000	980180000	2559700000	1163500000	1396300000	1924700000	1029900000	894790000	12233	1483	11590	75109;75110;75111;75112;75113;75114;75115;75116;75117;75118;75119;75120;75121;75122	101571;101572;101573;101574;101575;101576;101577;101578;101579;101580;101581;101582;101583;101584;101585;101586;101587;101588;101589;101590;101591;101592;101593;101594;101595;101596;101597;101598;101599;101600;101601;101602;101603;101604;101605	101597			35	
ELAQEQAR	0	Unmodified	943.47231	0.47230849	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			7.8843	7.6483	2	0.0018803	5461	160511_QHF_FH_JSI10i_1	95.815	58.656			1.1217	1.3092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1217	1.3092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169830000	87650000	82176000	0	0	0	169830000	87650000	82176000	0	0	0	0	0	0	12234	2636	11591	75123;75124	101606;101607	101606			2	
ELAQIAGRPTEDEDEK	1	Unmodified	1799.8537	0.85373628	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3								1	7	5	30.117	29.678	2;3	3.3456E-05	25122	160511_QHF_FH_JSI11i_2	88.133	62.811			0.71824	0.84297	44.254	11	8	Median	NaN	NaN	NaN	0	0	Median	0.68734	0.84297	NaN	1	1	Median	0.9928	0.9375	51.646	6	4	Median	0.6372	0.68235	45.281	4	3	Median	1014700000	567820000	446900000	0	0	0	93956000	56687000	37269000	578100000	335500000	242600000	342660000	175630000	167030000	12235	279	11592	75125;75126;75127;75128;75129;75130;75131;75132;75133;75134;75135;75136;75137	101608;101609;101610;101611;101612;101613;101614;101615;101616;101617;101618;101619;101620;101621;101622	101617			15	
ELAQQIEEETIK	1	Unmodified	1429.73	0.73003931	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.078	54.418	2	3.8144E-05	49111	160511_QHF_FH_JSI10i_1	172.17	97.797			0.65156	0.75516	8.2143	4	4	Linear	0.92243	0.77027	NaN	1	1	Median	0.60181	0.69594	NaN	1	1	Median	0.64113	0.63027	NaN	1	1	Median	0.66216	0.68762	NaN	1	1	Median	718010000	426700000	291310000	209320000	118400000	90922000	202430000	120870000	81553000	137840000	84592000	53248000	168430000	102840000	65587000	12236	4449	11593	75138;75139;75140;75141	101623;101624;101625;101626	101625			4	
ELAQQIQK	1	Unmodified	956.5291	0.52909508	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.35	4	7	6			4	4			6	8	4	7	19.666	16.205	2	2.8666E-17	10904	160513_QHF_FH_JSI11Kac_4	194.25	54.572			1.1398	1.1949	66.889	25	19	Median	1.4363	1.2158	64	6	4	Median	0.89195	1.0662	74.134	8	7	Median	1.2477	1.2595	40.009	4	2	Median	1.0788	1.1949	83.579	7	6	Median	16688000000	7699600000	8988600000	5439400000	2590800000	2848600000	4441800000	2360600000	2081100000	3273800000	1145300000	2128500000	3533100000	1602800000	1930300000	12237	1917;2519	11594	75142;75143;75144;75145;75146;75147;75148;75149;75150;75151;75152;75153;75154;75155;75156;75157;75158;75159;75160;75161;75162;75163;75164;75165;75166	101627;101628;101629;101630;101631;101632;101633;101634;101635;101636;101637;101638;101639;101640;101641;101642;101643;101644;101645;101646;101647;101648;101649;101650;101651;101652;101653;101654;101655	101639			29	
ELAQQVQQVAAEYCR	0	Unmodified	1791.8574	0.85738187	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	64.291	63.47	2	3.089E-137	57915	160511_QHF_FH_JSI12i_1	287.28	275.41			1.1475	1.0137	19.269	7	1	Median	1.2014	1.0091	0.651	2	1	Median	0.84183	1.0281	NaN	1	0	Median	0.8052	0.7808	2.5696	2	0	Median	1.1657	1.2476	2.832	2	0	Median	477540000	265560000	211980000	80913000	38927000	41986000	35169000	23711000	11458000	206390000	120150000	86235000	155070000	82769000	72305000	12238	1128	11595	75167;75168;75169;75170;75171;75172;75173	101656;101657;101658;101659;101660;101661;101662;101663;101664;101665;101666;101667	101661			12	
ELAQQVQQVADDYGK	1	Unmodified	1690.8162	0.81622856	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	59.312	58.662	2;3	1.8506E-137	53033	160511_QHF_FH_JSI11i_1	290.66	265.8			0.95521	0.97982	12.688	8	0	Median	0.95521	0.77875	0.32535	2	0	Median	0.83131	0.9956	6.2511	2	0	Median	1.0589	1.0257	4.0716	2	0	Median	0.96214	1.0101	6.7053	2	0	Median	3769500000	1884300000	1885200000	999310000	540820000	458490000	795540000	409350000	386200000	1068800000	409430000	659380000	905840000	524680000	381150000	12239	3893	11596	75174;75175;75176;75177;75178;75179;75180;75181	101668;101669;101670;101671;101672;101673;101674;101675;101676;101677;101678;101679;101680;101681;101682;101683;101684	101668			17	
ELAQQVSK	1	Unmodified	901.4869	0.48689592	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	1	0	3									1	1		1	12.027	11.532	2	0.012775	8948	160511_QHF_FH_JSI9i_1	52.937	22.433			1.0154	0.89115	9.4309	3	0	Plateau	1.1427	0.93251	NaN	1	0	Median	0.76266	0.89115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0154	1.0682	NaN	1	0	Median	177130000	92374000	84753000	43041000	23333000	19708000	91668000	46264000	45404000	0	0	0	42418000	22778000	19640000	12240	3566	11597	75182;75183;75184	101685	101685			1	
ELAQQVTPGDIVSTYGVRK	1	Unmodified	2060.0902	0.090218576	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		64.713	64.713	3	0.001017	57586	160511_QHF_FH_JSI11i_3	45.094	35.513			0.76836	0.72745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76836	0.72745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25484000	10895000	14589000	0	0	0	0	0	0	25484000	10895000	14589000	0	0	0	12241	4903	11598	75185	101686	101686			1	
ELAQRQEEEAAQQGPVVVSPASDYK	1	Unmodified	2728.3304	0.33040186	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	49.227	48.672	3	1.4282E-06	42603	160511_QHF_FH_JSI9i_2	66.3	63.313			1.0865	1.0783	57.17	5	4	Median	1.6579	1.3725	NaN	1	0	Median	0.87614	1.0783	NaN	1	1	Median	1.6166	1.5895	61.757	2	2	Median	0.4702	0.50358	NaN	1	1	Median	123070000	64387000	58682000	26308000	8590300	17718000	33857000	20682000	13174000	43726000	20518000	23207000	19179000	14596000	4582600	12242	518	11599	75186;75187;75188;75189;75190	101687;101688;101689;101690;101691;101692	101689			6	
ELAQTTR	0	Unmodified	817.42938	0.42938104	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.97	3	5					3	1		2	3	3	4	7.4294	4.2723	2	0.00036832	3128	160513_QHF_FH_JSI11Kac_4	116.88	37.768			0.97537	1.0345	13.363	12	1	Median	1.273	1.0682	34.673	2	0	Median	0.96255	1.1345	10.107	3	0	Median	0.96299	0.9476	8.0371	3	0	Median	0.9538	1.0345	8.0917	4	1	Median	6304000000	3092500000	3211500000	1786800000	777530000	1009300000	374870000	221980000	152890000	1927800000	981750000	946080000	2214500000	1111300000	1103300000	12243	1721	11600	75191;75192;75193;75194;75195;75196;75197;75198;75199;75200;75201;75202	101693;101694;101695;101696;101697;101698;101699;101700;101701;101702;101703;101704;101705	101700			13	
ELASALK	1	Unmodified	730.4225	0.42250475	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.04	5	3	1			1	5			5	3	4	3	22.046	18.497	2	0.0025962	5869	160513_QHF_FH_JSI9Kac_3	102.77	0			0.97212	0.91517	66.14	12	7	Median	1.173	0.95149	74.466	5	2	Median	0.63676	0.76423	91.349	2	1	Median	0.70731	0.72569	80.941	3	3	Median	0.60864	0.65954	46.817	2	1	Median	19635000000	9382900000	10252000000	5886000000	2607200000	3278900000	2656500000	1252900000	1403500000	6064800000	2926700000	3138100000	5027900000	2596100000	2431700000	12244	870	11601	75203;75204;75205;75206;75207;75208;75209;75210;75211;75212;75213;75214;75215;75216;75217	101706;101707;101708;101709;101710;101711;101712;101713;101714;101715;101716;101717;101718;101719	101713			14	
ELASPVSPELR	0	Unmodified	1196.6401	0.6401021	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	49.634	48.892	2	0.00045219	44325	160511_QHF_FH_JSI12i_1	86.898	57.811			2.2306	2.2115	155.09	4	3	Median	4.3485	3.6067	NaN	1	1	Median	1.1442	1.356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4246	1.4777	256.42	2	1	Median	597470000	230660000	366810000	192440000	49383000	143050000	111460000	54059000	57399000	0	0	0	293570000	127220000	166360000	12245	2947	11602	75218;75219;75220;75221;75222;75223	101720;101721;101722;101723;101724;101725	101722			6	
ELASQPDVDGFLVGGASLKPEFVDIINAK	2	Unmodified	3028.5757	0.57571751	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.84	6	9	18						3	5	4	8	19	102.22	101.35	2;3;4	0	88162	160511_QHF_FH_JSI12i_3	447.72	413.53			0.83777	0.86281	17.935	34	10	Median	0.99048	0.82975	21.179	5	0	Plateau	0.72123	0.85732	7.9728	4	1	Median	0.85032	0.84122	16.296	8	2	Median	0.79369	0.86362	19.118	17	7	Median	38944000000	20371000000	18573000000	5080900000	2586800000	2494000000	5695500000	3365300000	2330200000	11032000000	5717500000	5314500000	17135000000	8701300000	8434200000	12246	1908	11603	75224;75225;75226;75227;75228;75229;75230;75231;75232;75233;75234;75235;75236;75237;75238;75239;75240;75241;75242;75243;75244;75245;75246;75247;75248;75249;75250;75251;75252;75253;75254;75255;75256;75257;75258;75259	101726;101727;101728;101729;101730;101731;101732;101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744;101745;101746;101747;101748;101749;101750;101751;101752;101753;101754;101755;101756;101757;101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768;101769;101770;101771;101772;101773;101774	101760			49	
ELASSEQNK	1	Unmodified	1004.4775	0.47745344	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.0721	5.7482	2	2.1886E-16	3619	160511_QHF_FH_JSI11i_1	175.44	95.991			1.0129	0.94183	18.489	4	0	Median	0.98501	0.81224	NaN	1	0	Median	0.65594	0.77959	NaN	1	0	Median	1.111	1.0921	NaN	1	0	Median	1.0416	1.0972	NaN	1	0	Median	793820000	408170000	385650000	188740000	98323000	90419000	218720000	128140000	90586000	182750000	91460000	91290000	203610000	90251000	113360000	12247	3896	11604	75260;75261;75262;75263	101775;101776;101777;101778	101775			4	
ELATLQR	0	Unmodified	829.46577	0.46576654	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	4.18	4	3					1			2	2	3	1	21.984	20.459	2	0.0040196	16819	160511_QHF_FH_JSI11i_2	100.74	35.985			0.8784	0.94433	27.833	8	0	Median	1.3757	1.1458	18.014	2	0	Median	0.68332	0.82859	31.363	2	0	Median	0.77658	0.78534	20.469	3	0	Plateau	0.55884	0.57932	NaN	1	0	Median	1974800000	1015800000	959010000	446900000	207790000	239110000	535540000	305340000	230200000	823200000	409430000	413770000	169210000	93282000	75924000	12248	1600	11605	75264;75265;75266;75267;75268;75269;75270;75271	101779;101780;101781;101782;101783;101784;101785;101786;101787	101784			9	
ELATSASQSAVSTLR	0	Unmodified	1519.7842	0.78420015	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		52.193	41.459	2	1.1414E-06	24245	160513_QHF_FH_JSI11Kac_4	109.6	88.729			0.90071	0.91361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90071	0.91361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2114100	1100400	1013700	0	0	0	0	0	0	2114100	1100400	1013700	0	0	0	12249	1257	11606	75272	101788;101789	101789			2	
ELATVLSDQPGLLGPK	1	Unmodified	1636.9036	0.903587	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	79.124	78.499	2	4.9789E-17	71566	160511_QHF_FH_JSI11i_1	126.1	101.72			0.22708	0.24959	64.646	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.24304	0.27358	NaN	1	1	Median	0.77687	0.77021	NaN	1	1	Median	0.63345	0.66454	76.235	2	2	Median	97479000	73023000	24456000	0	0	0	30369000	26675000	3694100	33346000	24047000	9299000	33764000	22301000	11463000	12250	5507	11607	75273;75274;75275;75276;75277	101790;101791;101792;101793;101794	101790			5	
ELAVQIQK	1	Unmodified	927.53893	0.53893149	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.04	4	3				1	1			2	3	1	3	38.414	35.633	2	0.00011034	31237	160511_QHF_FH_JSI9i_1	128.57	56.428			0.99337	1.0483	20.257	9	2	Median	1.0472	0.87058	24.78	2	0	Median	1.0797	1.2661	14.593	3	1	Median	0.83969	0.80724	NaN	1	0	Median	0.99337	1.0812	7.7598	3	1	Median	2244700000	1216300000	1028500000	385920000	207290000	178630000	697500000	375970000	321530000	587020000	316010000	271020000	574300000	317010000	257300000	12251	1481	11608	75278;75279;75280;75281;75282;75283;75284;75285;75286	101795;101796;101797;101798;101799;101800;101801;101802;101803;101804;101805;101806;101807	101803			13	
ELAVQIYEEARK	1	Unmodified	1447.7671	0.76709352	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.496		9	7							3	2	5	6	51.597	50.907	2;3	2.3597E-09	43345	160511_QHF_FH_JSI12i_3	116.77	81.878			0.95276	0.98382	27.605	12	8	Median	0.9811	0.83202	9.726	2	1	Median	0.72312	0.89555	21.251	2	2	Median	0.96971	0.95639	43.404	4	3	Median	1.0623	1.109	16.293	4	2	Median	1873100000	932120000	940960000	195710000	96753000	98961000	331970000	186850000	145120000	654660000	320650000	334010000	690720000	327860000	362860000	12252	154	11609	75287;75288;75289;75290;75291;75292;75293;75294;75295;75296;75297;75298;75299;75300;75301;75302	101808;101809;101810;101811;101812;101813;101814;101815;101816;101817;101818;101819;101820;101821;101822;101823;101824;101825;101826	101825			18	
ELAVQVK	1	Unmodified	785.4647	0.46470391	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	26.911	26.481	2	0.0572	23663	160511_QHF_FH_JSI12i_1	41.502	7.7638			1.2473	1.3859	0.09581	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1831	1.385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3149	1.3868	NaN	1	0	Median	86042000	42852000	43190000	0	0	0	40593000	23205000	17387000	0	0	0	45449000	19647000	25802000	12253	4603	11610	75303;75304	101827	101827			1	
ELAYQIAEQFR	0	Unmodified	1366.6881	0.68811492	5748	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	71.328	70.255	2	0.002149	61989	160511_QHF_FH_JSI9i_2	73.499	35.196			1.6092	1.59	7.4022	2	2	Median	1.7328	1.509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4945	1.6755	NaN	1	1	Median	58672000	22778000	35894000	24325000	8921300	15404000	0	0	0	0	0	0	34346000	13857000	20490000	12254	5748	11611	75305;75306	101828;101829	101829			2	
ELCELKPK	2	Acetyl (K)	1057.5478	0.54778161	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		47.915	38.529	2	0.033124	21380	160513_QHF_FH_JSI11Kac_3	55.37	32.63			0.3215	0.31168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3215	0.31168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7450300	6046700	1403600	0	0	0	0	0	0	7450300	6046700	1403600	0	0	0	12255	5296	11612	75307	101830	101830			1	
ELCELKPK	2	Unmodified	1015.5372	0.53721693	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		21.09	20.505	3	0.008015	16824	160511_QHF_FH_JSI11i_2	47.198	26.894			0.20944	0.23509	34.198	2	1	Median	NaN	NaN	NaN	0	0	Median	0.15173	0.18459	NaN	1	1	Median	0.2891	0.2994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128630000	104670000	23958000	0	0	0	51933000	45958000	5974700	76698000	58715000	17983000	0	0	0	12256	5296	11612	75308;75309	101831;101832	101831			2	
ELCQGLGQPGSVLR	0	Unmodified	1512.7719	0.77186132	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	2	3	1	53.959	53.109	2	1.9504E-06	45960	160511_QHF_FH_JSI11i_2	130.65	79.208			0.85906	0.8608	47.57	5	3	Median	0.71286	0.61713	NaN	1	1	Median	1.0902	1.3141	67.124	2	2	Median	0.85906	0.8608	NaN	1	0	Median	1.1375	1.2621	NaN	1	0	Median	360090000	186840000	173250000	42830000	18705000	24125000	117280000	58073000	59208000	121290000	71826000	49466000	78688000	38233000	40455000	12257	1029	11613	75310;75311;75312;75313;75314;75315;75316	101833;101834;101835;101836;101837;101838;101839;101840;101841	101840			9	
ELCSLASDLSQPDLVYK	1	Unmodified	1936.9452	0.94519382	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		83.582	83.219	2	2.1638E-32	75471	160511_QHF_FH_JSI10i_1	147.26	129.89			0.71554	0.68837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71554	0.68837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7688000	5936800	1751200	0	0	0	0	0	0	7688000	5936800	1751200	0	0	0	12258	2997	11614	75317;75318	101842;101843;101844	101844			3	
ELDAISTNEEEK	1	Unmodified	1376.6307	0.6307192	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.856	30.584	2	0.00076253	26760	160511_QHF_FH_JSI9i_1	78.342	46.471			1.1812	1.0085	NaN	1	1	Median	1.1812	1.0085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36877000	13481000	23396000	36877000	13481000	23396000	0	0	0	0	0	0	0	0	0	12259	1669	11615	75319	101845	101845			1	
ELDAISTNEEEKEENEAESDVK	2	Unmodified	2507.1035	0.1034812	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.357	47.675	3	2.1708E-13	42961	160511_QHF_FH_JSI10i_1	121.47	113.38			1.0925	0.96727	27.574	4	1	Median	1.1025	0.89054	NaN	1	1	Median	0.76228	0.88189	NaN	1	0	Median	1.0825	1.0506	NaN	1	0	Median	1.526	1.5896	NaN	1	0	Median	402650000	178850000	223800000	51199000	28875000	22324000	99591000	65790000	33802000	98657000	45054000	53602000	153210000	39136000	114070000	12260	1669	11616	75320;75321;75322;75323	101846;101847;101848;101849;101850	101849			5	
ELDALDANDELTPLGR	0	Unmodified	1740.853	0.853008	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.082	75.599	2	1.538E-159	67249	160511_QHF_FH_JSI9i_1	305.6	258			0.98212	0.94089	10.209	4	1	Median	1.0416	0.86046	NaN	1	0	Median	0.76919	0.91216	NaN	1	0	Median	1.1265	1.0923	NaN	1	1	Median	0.92608	0.97052	NaN	1	0	Median	1069600000	507590000	562040000	153880000	73382000	80500000	229110000	131540000	97573000	371930000	138460000	233470000	314700000	164210000	150490000	12261	2265	11617	75324;75325;75326;75327	101851;101852;101853;101854;101855;101856;101857	101857			7	
ELDDISQEIAQLQR	0	Unmodified	1656.8319	0.83187862	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	81.981	81.513	2;3	1.517E-07	72585	160511_QHF_FH_JSI9i_1	117.86	101.14			0.38421	0.39869	22.248	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.47082	0.53894	NaN	1	1	Median	0.63859	0.60217	NaN	1	1	Median	0.38421	0.39225	NaN	1	1	Median	86470000	53178000	33292000	9552300	0	9552300	26591000	17204000	9386600	23474000	15110000	8364600	26852000	20864000	5988500	12262	5230	11618	75328;75329;75330;75331;75332	101858;101859;101860;101861;101862	101862			5	
ELDEEGSDPPLPGR	0	Unmodified	1509.6947	0.69471644	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	44.628	42.207	2	1.4083E-65	37550	160511_QHF_FH_JSI9i_1	205.13	185.86			0.9491	0.93379	7.5509	5	1	Median	1.2275	1.0011	NaN	1	1	Median	0.7963	0.93379	NaN	1	0	Median	0.94449	0.9115	1.3241	2	0	Median	1.0367	1.0848	NaN	1	0	Median	500890000	254950000	245940000	101750000	48228000	53526000	135350000	71329000	64025000	143030000	70636000	72391000	120750000	64753000	56000000	12263	4372	11619	75333;75334;75335;75336;75337;75338	101863;101864;101865;101866;101867;101868;101869;101870;101871;101872	101872			10	
ELDEEHSQELK	1	Unmodified	1355.6205	0.62048887	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	17.253	16.712	2;3	1.7076E-06	13972	160511_QHF_FH_JSI11i_1	121.36	84.016			0.9973	0.99666	39.053	10	8	Median	0.9024	0.73699	19.986	3	3	Median	1.2944	1.5024	25.717	2	1	Median	1.7283	1.7055	25.261	2	2	Median	0.78289	0.81524	17.238	3	2	Median	725340000	339150000	386180000	221090000	97220000	123870000	135650000	63740000	71907000	139450000	63189000	76260000	229150000	115000000	114140000	12264	4673	11620	75339;75340;75341;75342;75343;75344;75345;75346;75347;75348;75349	101873;101874;101875;101876;101877;101878;101879;101880;101881;101882;101883;101884;101885	101873			12	
ELDEHELDYDEEVPEEPAPAVQEDEAEK	1	Unmodified	3253.3946	0.39463742	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	65.963	65.434	3	6.3432E-10	59614	160511_QHF_FH_JSI12i_1	73.676	70.997			1.2938	1.3055	12.733	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4705	1.4285	NaN	1	1	Median	1.1383	1.1931	NaN	1	1	Median	36327000	16561000	19766000	0	0	0	0	0	0	15264000	2729200	12535000	21063000	13832000	7230600	12265	3341	11621	75350;75351	101886;101887	101887			2	
ELDESLQVAER	0	Unmodified	1287.6307	0.63065962	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	42.235	41.715	2	0.00079488	37499	160511_QHF_FH_JSI10i_1	96.171	60.727			0.79097	0.85709	7.2183	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7121	0.81444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87859	0.90197	NaN	1	1	Median	218440000	123130000	95316000	0	0	0	117620000	72222000	45403000	0	0	0	100820000	50906000	49912000	12266	981	11622	75352;75353	101888;101889	101889			2	
ELDEYMHGGK	1	Unmodified	1177.5074	0.50737336	4774	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		25.09	24.737	3	0.060027	20634	160511_QHF_FH_JSI11i_2	20.788	16.489			2.2484	2.2387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2484	2.2387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43115000	13538000	29577000	0	0	0	0	0	0	43115000	13538000	29577000	0	0	0	12267	4774	11623	75354	101890	101890			1	
ELDGERER	0	Unmodified	1002.473	0.47303677	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.21	0.41		11	3							3	3	4	4	5.6653	5.3759	2;3	0.0042061	3266	160511_QHF_FH_JSI11i_2	102.41	45.23			0.87256	0.84811	25.97	14	1	Median	1.0018	0.85106	4.8244	3	0	Median	0.70618	0.88374	20.341	3	1	Median	1.1326	1.1795	27.6	4	0	Linear	0.65281	0.69355	41.45	4	0	Median	3033800000	1586000000	1447700000	621430000	288320000	333110000	651300000	326060000	325240000	1049200000	548990000	500230000	711830000	422680000	289150000	12268	2069	11624	75355;75356;75357;75358;75359;75360;75361;75362;75363;75364;75365;75366;75367;75368	101891;101892;101893;101894;101895;101896;101897;101898;101899;101900;101901	101897			11	
ELDGHVLK	1	Unmodified	909.49198	0.4919813	2555;3692	Q14671;Q8TB72	PUM1;PUM2	Pumilio homolog 1;Pumilio homolog 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	22.337	21.544	3	0.0028937	18566	160511_QHF_FH_JSI10i_2	61.679	37.524			0.3848	0.40488	7.3513	3	3	Median	NaN	NaN	NaN	0	0	Median	0.30255	0.36516	NaN	1	1	Median	0.40485	0.40488	NaN	1	1	Median	0.3848	0.42099	NaN	1	1	Median	135750000	88256000	47492000	0	0	0	42314000	29576000	12738000	60135000	38126000	22009000	33299000	20555000	12745000	12269	2555;3692	11625	75369;75370;75371	101902;101903;101904	101904			3	
ELDGIIQDGVHNITK	1	Unmodified	1650.8577	0.85769944	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	66.179	65.283	2;3	1.1014E-05	56983	160511_QHF_FH_JSI11i_2	80.706	69.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12270	3466	11626	75372;75373;75374	101905;101906;101907	101906			3	
ELDHFPLEK	1	Unmodified	1126.5659	0.56587452	1217	P22830	FECH	Ferrochelatase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.816	45.312	3	0.014	38984	160511_QHF_FH_JSI11i_2	41.54	34.88			0.53004	0.55472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53004	0.55472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37464000	21807000	15657000	0	0	0	0	0	0	37464000	21807000	15657000	0	0	0	12271	1217	11627	75375	101908	101908			1	
ELDHNISK	1	Unmodified	954.47706	0.47705951	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	3	2	1	10.556	10.094	2;3	0.0012318	7570	160511_QHF_FH_JSI11i_2	66.299	33.458			0.97572	1.0499	32.604	7	6	Median	0.96381	0.83813	NaN	1	1	Median	0.97572	1.1971	48.867	3	3	Median	0.93634	0.95013	14.126	2	1	Median	1.2236	1.3647	NaN	1	1	Median	931540000	531480000	400060000	98024000	56123000	41901000	342810000	219540000	123270000	417750000	217420000	200330000	72947000	38391000	34557000	12272	679	11628	75376;75377;75378;75379;75380;75381;75382	101909;101910;101911;101912;101913;101914;101915;101916	101911			8	
ELDHNISKHK	2	Acetyl (K)	1261.6415	0.64149908	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		19.723	10.543	3	0.00068056	7512	160513_QHF_FH_JSI11Kac_6	73.435	60.804			0.27773	0.2702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27773	0.2702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14697000	11146000	3551000	0	0	0	0	0	0	14697000	11146000	3551000	0	0	0	12273	679	11629	75383	101917	101917	338		1	
ELDIMEPK	1	Unmodified	973.47903	0.47903335	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.905	47.224	2	0.0013515	42463	160511_QHF_FH_JSI11i_1	90.657	73.881			1.023	0.92546	18.797	4	0	Median	1.0785	0.89613	NaN	1	0	Median	0.7099	0.82931	NaN	1	0	Median	0.9704	0.95575	NaN	1	0	Median	1.1886	1.2758	NaN	1	0	Median	1491700000	766710000	725040000	327060000	159290000	167770000	363070000	226710000	136360000	399470000	190910000	208560000	402150000	189800000	212350000	12274	2370	11630	75384;75385;75386;75387	101918;101919;101920;101921;101922;101923;101924	101918			7	
ELDIMEPKVPDDIYK	2	Unmodified	1803.8965	0.89645272	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	76.998	75.774	3	0.053426	65390	160511_QHF_FH_JSI12i_2	31.614	15.73			1.3594	1.445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3594	1.445	NaN	1	1	Median	17302000	8622900	8679400	0	0	0	0	0	0	0	0	0	17302000	8622900	8679400	12275	2370	11631	75388	101925	101925			1	
ELDINNQVVPK	1	Unmodified	1267.6772	0.67721588	3105	Q6P4E1	CASC4	Protein CASC4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	49.819	49.319	2	1.3555E-09	44439	160511_QHF_FH_JSI10i_1	134.84	124.47			0.92085	1.0244	9.3037	3	2	Median	NaN	NaN	NaN	0	0	Median	0.86303	1.0244	NaN	1	0	Median	1.2567	1.1716	NaN	1	1	Median	0.92085	0.97988	NaN	1	1	Median	153730000	87067000	66662000	0	0	0	43189000	23050000	20138000	50381000	25988000	24393000	60160000	38029000	22131000	12276	3105	11632	75389;75390;75391;75392	101926;101927;101928;101929	101929			4	
ELDLHGLYTR	0	Unmodified	1215.6248	0.62478638	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	54.889	53.954	3	0.010774	46365	160511_QHF_FH_JSI12i_2	36.528	31.57			1.007	1.1105	22.443	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64722	0.80572	NaN	1	0	Median	1.2532	1.2414	NaN	1	0	Median	1.007	1.1105	NaN	1	0	Median	75488000	42441000	33047000	0	0	0	27704000	18156000	9548600	32897000	16329000	16568000	14886000	7956400	6930000	12277	3021	11633	75393;75394;75395	101930	101930			1	
ELDLSDANPEVTMTMLR	0	Unmodified	1933.9125	0.91251349	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	94.267	94.037	2	1.4405E-16	85520	160511_QHF_FH_JSI12i_1	168.59	154.17			1.2644	1.2602	16.57	3	2	Median	NaN	NaN	NaN	0	0	Median	0.83465	0.95192	NaN	1	1	Median	1.2967	1.2602	NaN	1	1	Median	1.2644	1.2761	NaN	1	0	Median	60687000	28744000	31943000	0	0	0	25579000	12701000	12878000	17370000	7705200	9664600	17738000	8337700	9400600	12278	5222	11634	75396;75397;75398	101931;101932;101933;101934;101935	101933			5	
ELDLVSHHVR	0	Unmodified	1203.636	0.63601977	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.658	27.636	2;3	0.00032311	23192	160511_QHF_FH_JSI12i_3	69.346	46.816			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12279	2100	11635	75399;75400	101936;101937	101937			2	
ELDMEPYTVAGVAK	1	Unmodified	1521.7385	0.73849551	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.155	66.579	2	1.4317E-05	60687	160511_QHF_FH_JSI12i_1	84.884	23.649			0.79538	0.81463	2.5606	3	1	Median	0.99686	0.81463	NaN	1	0	Median	0.70632	0.82636	NaN	1	0	Median	0.79538	0.78627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	307570000	143940000	163640000	104150000	35936000	68215000	92251000	54122000	38129000	111170000	53881000	57292000	0	0	0	12280	3921	11636	75401;75402;75403;75404	101938;101939;101940;101941	101939			4	
ELDPIQK	1	Unmodified	841.45453	0.45453316	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.07	4					4	1			2	2	2	3	29.698	23.531	2	0.0010419	15231	160513_QHF_FH_JSI12Kac_3	111.28	0			1.0127	1.0238	19.162	9	1	Median	1.2473	0.98969	2.9254	2	0	Median	0.99431	1.1787	3.0459	2	0	Median	1.1159	1.0888	8.7038	2	0	Median	0.64886	0.68797	21.608	3	1	Plateau	2926000000	1402100000	1523900000	711990000	287860000	424130000	800420000	430020000	370400000	656700000	289740000	366960000	756930000	394510000	362420000	12281	1149	11637	75405;75406;75407;75408;75409;75410;75411;75412;75413	101942;101943;101944;101945;101946;101947;101948;101949;101950;101951	101950			10	
ELDPTNMTYITNQAAVYFEK	1	Unmodified	2347.1042	0.10421366	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	101.22	101.11	2;3	0	91811	160511_QHF_FH_JSI11i_1	406.64	379.67			1.0879	0.94652	12.915	7	0	Median	1.1226	0.92279	3.5901	2	0	Median	0.73254	0.86895	3.1592	2	0	Median	1.063	1.0261	3.6473	2	0	Median	1.1556	1.2422	NaN	1	0	Median	3074600000	1551600000	1523000000	568550000	247380000	321170000	1018400000	563290000	455160000	1092000000	565230000	526770000	395570000	175660000	219910000	12282	1386	11638	75414;75415;75416;75417;75418;75419;75420	101952;101953;101954;101955;101956;101957;101958;101959;101960;101961;101962;101963;101964;101965	101955			14	
ELDPTNMTYITNQAAVYFEK	1	Oxidation (M)	2363.0991	0.099128282	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0				By MS/MS	1	0	2												2	85.677	85.184	3	0.0051529	77593	160511_QHF_FH_JSI12i_1	39.276	30.18			0.81981	0.87574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81981	0.87574	NaN	1	0	Median	22989000	10448000	12541000	0	0	0	0	0	0	0	0	0	22989000	10448000	12541000	12283	1386	11638	75421;75422	101966;101967	101966		1032	2	
ELDQWIEQLNECK	1	Unmodified	1703.7825	0.78248559	2065	P67775	PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	85.065	84.003	2	3.9569E-05	73919	160511_QHF_FH_JSI11i_2	79.82	57.827			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10037000	0	10037000	0	0	0	0	0	0	0	0	0	10037000	0	10037000	12284	2065	11639	75423;75424	101968;101969;101970	101970			3	
ELDSITPEVLPGWK	1	Unmodified	1582.8243	0.82427405	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								2	3	4	4	88.476	87.997	2;3	1.3093E-14	80301	160511_QHF_FH_JSI11i_1	158.41	116.87			1.1724	1.2179	22.844	13	8	Median	1.4595	1.2417	2.7407	2	2	Median	0.84699	1.0158	34.363	3	1	Median	1.1787	1.2012	16.099	4	2	Median	1.2391	1.3411	13.418	4	3	Median	721040000	332030000	389000000	82309000	31906000	50403000	171610000	91896000	79710000	195600000	90541000	105060000	271530000	117690000	153840000	12285	2780	11640	75425;75426;75427;75428;75429;75430;75431;75432;75433;75434;75435;75436;75437	101971;101972;101973;101974;101975;101976;101977;101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989	101973			19	
ELDSNPFASLVFYWEPLNR	0	Unmodified	2296.1164	0.11643333	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.875	93.154	2	6.7574E-199	54569	160513_QHF_FH_JSI10Kac_6	304.89	279.17			1.0331	1.2287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0331	1.2287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213940000	103280000	110660000	0	0	0	213940000	103280000	110660000	0	0	0	0	0	0	12286	5048	11641	75438	101990;101991	101990			2	
ELDSQLNEPR	0	Unmodified	1199.5782	0.57823012	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	3	1	27.977	26.355	2	1.2885E-06	22942	160511_QHF_FH_JSI9i_1	128.52	99.359			0.94342	0.88406	8.9759	8	7	Median	1.0318	0.84906	7.2579	2	2	Median	0.76286	0.89212	4.8115	2	2	Median	0.97435	0.92085	10.813	3	2	Median	0.80606	0.81901	NaN	1	1	Median	579690000	322400000	257290000	178050000	90031000	88021000	175580000	108920000	66658000	143660000	78776000	64889000	82397000	44675000	37721000	12287	1790	11642	75439;75440;75441;75442;75443;75444;75445;75446	101992;101993;101994;101995;101996;101997;101998;101999;102000	102000			9	
ELDTVTLEDIK	1	Unmodified	1274.6606	0.66056277	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	67.808	64.567	2	3.3067E-18	58175	160511_QHF_FH_JSI11i_1	163.38	102.47			1.0021	0.91102	30.735	6	1	Median	1.1157	0.93222	NaN	1	0	Median	1.0134	1.1948	50.502	2	1	Median	0.90005	0.8903	NaN	1	0	Median	1.0496	1.1244	36.772	2	0	Median	1480900000	783400000	697540000	335060000	145560000	189500000	361800000	218410000	143390000	425250000	230110000	195130000	358840000	189320000	169530000	12288	313	11643	75447;75448;75449;75450;75451;75452	102001;102002;102003;102004;102005;102006;102007;102008;102009;102010;102011	102001			11	
ELDVEEAHAASTEEK	1	Unmodified	1656.7479	0.74787422	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.101	27.782	2	7.1039E-22	24628	160511_QHF_FH_JSI10i_1	142.83	119.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12289	4003	11644	75453	102012	102012			1	
ELDYFAK	1	Unmodified	884.42798	0.42798405	866	P07205	PGK2	Phosphoglycerate kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.803	42.333	2	0.035999	38044	160511_QHF_FH_JSI10i_1	49.358	1.5099			1.3599	1.3872	12.488	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91041	1.0848	NaN	1	0	Median	1.3347	1.2741	NaN	1	0	Median	1.3599	1.3872	NaN	1	0	Median	461190000	179120000	282070000	0	0	0	132470000	68100000	64371000	153300000	63371000	89931000	175420000	47648000	127770000	12290	866	11645	75454;75455;75456	102013;102014;102015	102015			3	
ELEAEEREWYPSLATMQESLR	0	Unmodified	2566.201	0.20096759	3681	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		87.693	87.693	3	0.013023	78289	160511_QHF_FH_JSI11i_3	26.21	18.498			0.89427	0.82588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89427	0.82588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21247000	12505000	8741700	0	0	0	0	0	0	21247000	12505000	8741700	0	0	0	12291	3681	11646	75457	102016	102016			1	
ELEAENYHDIK	1	Unmodified	1359.6307	0.63065962	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		27.707	27.343	2;3	0.00013306	23003	160511_QHF_FH_JSI11i_2	90.108	77.532			1.8397	1.8204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8397	1.8204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47875000	18584000	29292000	0	0	0	0	0	0	47875000	18584000	29292000	0	0	0	12292	2162	11647	75458;75459	102017;102018	102018			2	
ELEAERFR	0	Unmodified	1048.5302	0.53015772	4089	Q96GE4	CEP95	Centrosomal protein of 95 kDa	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			12.988	12.397	3	0.060393	10235	160511_QHF_FH_JSI10i_2	24.894	2.8081			9.5445	11.859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9.5445	11.859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	370930000	43677000	327250000	0	0	0	370930000	43677000	327250000	0	0	0	0	0	0	12293	4089	11648	75460	102019	102019			1	
ELEAHSAEAR	0	Unmodified	1111.5258	0.52580062	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	7.7535	6.3221	2;3	6.862E-11	4987	160511_QHF_FH_JSI12i_2	144.77	104.42			0.93238	0.96021	11.855	9	1	Median	1.0215	0.88116	8.1128	2	0	Median	0.8185	1.0041	13.786	2	0	Median	1.0589	1.0859	11.967	3	1	Median	0.85415	0.95534	6.0976	2	0	Median	988260000	508390000	479880000	183410000	95140000	88271000	229370000	116050000	113320000	283320000	140280000	143040000	292160000	156920000	135240000	12294	4361	11649	75461;75462;75463;75464;75465;75466;75467;75468;75469	102020;102021;102022;102023;102024;102025;102026;102027;102028;102029;102030;102031;102032	102021			13	
ELEALDEVFTK	1	Unmodified	1292.65	0.64999808	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	79.157	78.638	2	1.138E-07	69886	160511_QHF_FH_JSI9i_1	124.67	112.08			0.79811	0.85354	89.531	5	1	Median	0.72528	0.58811	NaN	1	0	Median	0.85715	1.0367	83.342	2	1	Median	4.8365	4.6663	NaN	1	0	Median	0.79811	0.85354	NaN	1	0	Median	392800000	194340000	198450000	69167000	38263000	30904000	136810000	70733000	66081000	80143000	23884000	56259000	106670000	61465000	45208000	12295	5428	11650	75470;75471;75472;75473;75474	102033;102034;102035;102036;102037;102038;102039	102038			7	
ELEALMPSAAGQEK	1	Unmodified	1472.7181	0.71809442	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	54.532	54.001	2	0.0035512	49233	160511_QHF_FH_JSI12i_1	64.121	41.793			0.66513	0.74254	6.3082	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65261	0.77641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6779	0.71014	NaN	1	1	Median	82895000	48288000	34607000	0	0	0	44891000	25167000	19724000	0	0	0	38004000	23121000	14883000	12296	2544	11651	75475;75476	102040;102041	102040			2	
ELEANVLATAPDK	1	Unmodified	1369.7089	0.70890994	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	52.243	51.572	2	1.1334E-10	46265	160511_QHF_FH_JSI10i_1	151.98	96.427			0.6999	0.70414	42.124	5	1	Median	0.86203	0.70414	NaN	1	0	Median	0.65155	0.75557	NaN	1	0	Median	0.6999	0.68476	NaN	1	0	Median	0.81669	0.85963	81.45	2	1	Median	634570000	346210000	288360000	124860000	61619000	63244000	153320000	83019000	70300000	127150000	72698000	54456000	229230000	128870000	100360000	12297	4989	11652	75477;75478;75479;75480;75481	102042;102043;102044;102045;102046;102047;102048;102049;102050;102051;102052;102053	102047			12	
ELEAQEK	1	Unmodified	845.41306	0.41306227	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			7.893	7.4323	2	0.029842	4950	160511_QHF_FH_JSI9i_1	52.403	6.387			0.95943	0.94708	5.3663	2	0	Median	1.1751	0.98371	NaN	1	0	Median	0.78332	0.91182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	720760000	348010000	372750000	345560000	156660000	188900000	375200000	191350000	183850000	0	0	0	0	0	0	12298	150	11653	75482;75483	102054;102055	102055			2	
ELEAVCQDVLSLLDNYLIK	1	Unmodified	2234.1504	0.15043557	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		103.47	103.4	3	2.0287E-08	91153	160511_QHF_FH_JSI11i_2	107.69	99.469			0.79363	0.93904	17.886	3	1	Plateau	1.0785	0.93904	NaN	1	1	Median	0.95795	1.1484	NaN	1	0	Median	0.79363	0.80381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220660000	120370000	100290000	28377000	15067000	13310000	26116000	12159000	13957000	166170000	93144000	73023000	0	0	0	12299	1976	11654	75484;75485;75486	102056;102057;102058;102059	102058			4	
ELEDAQAGSGTIGR	0	Unmodified	1402.6688	0.66883604	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	1	2	27.73	25.736	2	1.3423E-21	23009	160511_QHF_FH_JSI12i_1	178.1	135.24			0.89626	0.85689	23.78	6	4	Median	1.2564	1.0322	30.119	2	2	Median	0.73726	0.87241	NaN	1	1	Median	1.1025	1.0916	NaN	1	0	Median	0.70096	0.73627	18.916	2	1	Median	462690000	224940000	237750000	157250000	70566000	86687000	110780000	60420000	50358000	102230000	49407000	52827000	92423000	44549000	47874000	12300	1406	11655	75487;75488;75489;75490;75491;75492	102060;102061;102062;102063;102064;102065;102066	102062			7	
ELEDATETADAMNR	0	Unmodified	1564.6675	0.66751541	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				4	3	4	3	36.602	32.678	2;3	1.9445E-226	31975	160511_QHF_FH_JSI12i_1	345.97	316.31			0.97704	0.92093	38.41	13	4	Median	1.3366	0.7192	70.688	4	3	Median	0.7654	0.90536	12.793	3	0	Plateau	1.0695	1.0285	22.643	3	1	Median	0.84585	0.88754	2.1602	3	0	Plateau	4074500000	2087200000	1987300000	1104100000	552770000	551280000	974690000	510290000	464400000	1108600000	549770000	558790000	887190000	474360000	412830000	12301	1436	11656	75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506	102067;102068;102069;102070;102071;102072;102073;102074;102075;102076;102077;102078;102079;102080;102081;102082;102083;102084	102070			18	
ELEDATETADAMNR	0	Oxidation (M)	1580.6624	0.66243003	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	5.26	2				2	3				2	2	1	2	31.445	25.313	2	6.7195E-98	31279	160511_QHF_FH_JSI9i_1	257.8	242.18			0.96485	1.023	47.077	7	2	Median	1.3973	1.1665	92.397	2	0	Median	0.56443	0.64932	6.7048	2	2	Median	1.0551	1.023	NaN	1	0	Median	1.0716	1.154	13.519	2	0	Median	281030000	112880000	168160000	264650000	104090000	160570000	2962500	2002200	960350	7453400	3963200	3490100	5964700	2824400	3140300	12302	1436	11656	75507;75508;75509;75510;75511;75512;75513	102085;102086;102087;102088;102089;102090;102091;102092;102093	102089		1095	8	
ELEDATETADAMNREVSSLK	1	Unmodified	2208.0216	0.021606243	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	67.593	67.002	2;3	1.2235E-09	60973	160511_QHF_FH_JSI12i_1	116.21	81.717			2.0597	1.9867	39.393	5	2	Median	1.3751	1.1214	NaN	1	0	Median	1.191	1.4152	NaN	1	0	Median	2.0597	1.9867	NaN	1	0	Median	2.5853	2.7082	5.9792	2	2	Median	814240000	349330000	464910000	132200000	57459000	74737000	228000000	121660000	106340000	213910000	85930000	127980000	240130000	84279000	155850000	12303	1436	11657	75514;75515;75516;75517;75518	102094;102095;102096;102097;102098;102099	102095			6	
ELEDFEMK	1	Unmodified	1039.4532	0.45321253	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	46.456	45.828	2	0.0027947	41726	160511_QHF_FH_JSI12i_1	84.743	70.747			1.0577	1.0612	59.377	6	6	Median	1.7205	1.4206	NaN	1	1	Median	0.55799	0.64871	NaN	1	1	Median	1.2144	1.1503	109.51	2	2	Median	1.0577	1.1047	46.935	2	2	Median	379040000	186700000	192340000	53920000	19630000	34289000	69398000	38912000	30486000	129440000	63793000	65646000	126280000	64367000	61915000	12304	5279	11658	75519;75520;75521;75522;75523;75524	102100;102101;102102;102103;102104;102105	102103			6	
ELEDFEMKK	2	Unmodified	1167.5482	0.54817555	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		36.237	35.688	3	0.0019774	30509	160511_QHF_FH_JSI11i_2	60.518	42.654			0.52237	0.52301	104.62	3	3	Median	NaN	NaN	NaN	0	0	Median	0.4078	0.49855	NaN	1	1	Median	1.2965	1.2785	126.41	2	2	Median	NaN	NaN	NaN	0	0	Median	195760000	103240000	92519000	0	0	0	58370000	33941000	24429000	137390000	69303000	68090000	0	0	0	12305	5279	11659	75525;75526;75527	102106;102107;102108	102107			3	
ELEDLEGYQNTIVAGSLITK	1	Unmodified	2192.1212	0.12124393	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										3	1		91.623	91.564	2;3	2.3954E-33	83078	160511_QHF_FH_JSI10i_1	155.98	135.14			0.69432	0.78534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69432	0.78534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17859000	8455400	9403600	0	0	0	17859000	8455400	9403600	0	0	0	0	0	0	12306	521	11660	75528;75529;75530;75531	102109;102110;102111;102112	102111			4	
ELEDLEVDGQK	1	Unmodified	1273.6038	0.60377617	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	41.297	40.612	2	1.218E-05	36812	160511_QHF_FH_JSI12i_1	127.76	68.415			1.9809	2.3933	64.218	7	7	Median	1.9807	1.6278	77.61	2	2	Median	1.2049	1.4406	71.789	2	2	Median	2.7758	2.6816	NaN	1	1	Median	1.3688	1.4435	102.41	2	2	Median	4322900000	2102400000	2220500000	927750000	421310000	506430000	1488500000	835560000	652910000	554690000	255030000	299660000	1352000000	590530000	761490000	12307	2282	11661	75532;75533;75534;75535;75536;75537;75538	102113;102114;102115;102116;102117;102118;102119	102115			7	
ELEDLLSPLEELVK	1	Unmodified	1625.8764	0.8763692	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	102.45	102.32	2	2.4981E-15	88249	160511_QHF_FH_JSI12i_2	199.7	123.47			1.0098	1.0944	1.4983	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0592	1.1061	NaN	1	0	Median	0.96271	1.0829	NaN	1	0	Median	168470000	90934000	77539000	0	0	0	0	0	0	77422000	43119000	34303000	91052000	47815000	43236000	12308	1467	11662	75539;75540	102120	102120			1	
ELEDPESAMLDTLDR	0	Unmodified	1732.7825	0.78254517	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	83.021	82.618	2	2.0736E-06	74982	160511_QHF_FH_JSI10i_1	125.28	115.6			1.0387	1.1472	8.7523	5	2	Median	1.5664	1.2805	NaN	1	0	Median	1.0034	1.1656	2.2585	2	2	Median	1.0504	1.0229	NaN	1	0	Median	1.0311	1.0707	NaN	1	0	Median	180180000	89548000	90630000	34270000	17159000	17111000	80755000	40643000	40111000	34489000	16527000	17963000	30664000	15219000	15445000	12309	3378	11663	75541;75542;75543;75544;75545	102121;102122;102123;102124;102125;102126;102127;102128	102125			8	
ELEEAVTSALQQETEK	1	Unmodified	1803.8738	0.87380302	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				69.823	68.863	2	1.0121E-05	61158	160511_QHF_FH_JSI9i_1	117.7	85.45			1.5688	1.2972	NaN	1	1	Median	1.5688	1.2972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27202000	5987100	21215000	27202000	5987100	21215000	0	0	0	0	0	0	0	0	0	12310	5458	11664	75546;75547	102129;102130	102129			2	
ELEEDFIK	1	Unmodified	1021.4968	0.4967919	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	3.41	8	2				1				3	3	2	3	52.035	50.527	1;2	0.00018124	45592	160511_QHF_FH_JSI10i_1	135.77	112.75			0.92352	0.89665	21.159	11	0	Median	1.016	0.86601	32.554	3	0	Median	0.69979	0.82028	13.882	3	0	Median	1.0131	0.98361	13.09	2	0	Median	0.98702	1.0518	5.3772	3	0	Plateau	4594700000	2378800000	2215900000	888730000	444020000	444710000	1093800000	542130000	551720000	1254400000	711020000	543350000	1357800000	681640000	676130000	12311	2487	11665	75548;75549;75550;75551;75552;75553;75554;75555;75556;75557;75558	102131;102132;102133;102134;102135;102136;102137;102138;102139;102140;102141;102142;102143;102144;102145	102139			13	
ELEEEITLRK	1	Unmodified	1258.6769	0.67688153	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			40.307	39.3	3	0.019438	34496	160511_QHF_FH_JSI10i_2	29.299	13.045			0.84076	0.8699	37.833	2	1	Median	1.2954	1.1367	NaN	1	1	Median	0.54567	0.66571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75982000	39468000	36514000	32315000	12638000	19677000	43666000	26830000	16836000	0	0	0	0	0	0	12312	475	11666	75559;75560	102146;102147	102147			2	
ELEEETGYK	1	Unmodified	1096.4924	0.49243481	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.93	19.425	2	0.00040066	16827	160511_QHF_FH_JSI12i_1	91.069	30.387			1.1113	0.98736	23.07	4	4	Median	1.2417	1.0399	NaN	1	1	Median	1.2334	1.4797	NaN	1	1	Median	1.0013	0.93745	NaN	1	1	Median	0.85412	0.88398	NaN	1	1	Median	279110000	136510000	142600000	78773000	35969000	42803000	78369000	35151000	43217000	70579000	37905000	32674000	51389000	27484000	23905000	12313	5370	11667	75561;75562;75563;75564	102148;102149;102150;102151	102149			4	
ELEEIVQPIISK	1	Unmodified	1396.7813	0.7813466	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.84	16	8	3			3	5	4		10	10	8	11	74.889	71.112	2;3	2.7226E-44	67327	160511_QHF_FH_JSI10i_1	248.88	193.35			0.87667	0.85176	105.54	38	34	Median	0.82417	0.6847	119.58	9	7	Median	0.36097	0.41667	101.73	10	10	Median	0.89309	0.8587	115.28	8	7	Median	1.0887	1.1956	99.275	11	10	Median	18415000000	10041000000	8374300000	4165200000	1912400000	2252800000	5519100000	3538700000	1980400000	4490000000	2387600000	2102400000	4241100000	2202400000	2038700000	12314	982	11668	75565;75566;75567;75568;75569;75570;75571;75572;75573;75574;75575;75576;75577;75578;75579;75580;75581;75582;75583;75584;75585;75586;75587;75588;75589;75590;75591;75592;75593;75594;75595;75596;75597;75598;75599;75600;75601;75602;75603	102152;102153;102154;102155;102156;102157;102158;102159;102160;102161;102162;102163;102164;102165;102166;102167;102168;102169;102170;102171;102172;102173;102174;102175;102176;102177;102178;102179;102180;102181;102182;102183;102184;102185;102186;102187;102188;102189;102190;102191;102192;102193;102194;102195;102196;102197;102198;102199;102200;102201;102202;102203;102204	102178			53	
ELEELERER	0	Unmodified	1201.5939	0.59388018	2182	Q02040	AKAP17A	A-kinase anchor protein 17A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.617	20.617	3	0.00035308	17418	160511_QHF_FH_JSI11i_3	73.233	2.3248			1.4171	1.328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4171	1.328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146310000	56653000	89660000	0	0	0	0	0	0	146310000	56653000	89660000	0	0	0	12315	2182	11669	75604	102205	102205			1	
ELEELSLEAQGIK	1	Unmodified	1457.7613	0.76133944	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	66.221	65.538	2	5.4632E-53	59316	160511_QHF_FH_JSI10i_1	219.5	158.91			0.8962	0.93034	42.832	5	2	Median	1.4084	1.1606	80.082	2	2	Median	0.71197	0.82672	NaN	1	0	Median	1.1273	1.1082	NaN	1	0	Median	0.8962	0.93034	NaN	1	0	Median	719930000	386230000	333710000	178580000	88999000	89580000	198210000	110780000	87428000	174520000	98926000	75590000	168630000	87520000	81109000	12316	454	11670	75605;75606;75607;75608;75609	102206;102207;102208;102209;102210;102211;102212;102213	102211			8	
ELEEQLENETLHK	1	Unmodified	1610.7788	0.77878042	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	45.427	44.447	2;3	8.7263E-23	38242	160511_QHF_FH_JSI11i_2	147.72	111.19			1.2117	1.1936	44.043	3	1	Plateau	1.1721	0.99756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2117	1.2042	NaN	1	0	Median	0.45129	0.52021	NaN	1	1	Median	249660000	125960000	123700000	82541000	35427000	47114000	0	0	0	100470000	52556000	47912000	66651000	37973000	28677000	12317	8	11671	75610;75611;75612;75613	102214;102215;102216;102217	102217			4	
ELEEQTRK	1	Unmodified	1031.5247	0.52473799	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	3	4	5.7541	5.4914	2;3	8.937E-10	3274	160511_QHF_FH_JSI12i_3	164.77	108.23			1.1938	1.215	24.159	10	0	Median	1.7015	1.4149	2.5756	2	0	Median	1.3923	1.6991	NaN	1	0	Median	1.4692	1.535	21.462	3	0	Plateau	0.94392	1.0046	14.194	4	0	Median	4880100000	2112600000	2767500000	991800000	378250000	613550000	629000000	237880000	391120000	1490200000	566120000	924080000	1769100000	930410000	838710000	12318	1426	11672	75614;75615;75616;75617;75618;75619;75620;75621;75622;75623	102218;102219;102220;102221;102222;102223;102224;102225;102226;102227;102228	102226			11	
ELEEVSPETPVVPATTQR	0	Unmodified	1981.0004	0.0004005156	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.145	57.751	2	3.713E-16	52323	160511_QHF_FH_JSI11i_1	119.01	94.671			1.0868	1.2303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0868	1.2303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22901000	7834700	15067000	0	0	0	22901000	7834700	15067000	0	0	0	0	0	0	12319	2636	11673	75624;75625;75626	102229;102230;102231	102229			3	
ELEEWYAR	0	Unmodified	1094.5033	0.50327426	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	45.323	44.5	2	0.00014806	38279	160511_QHF_FH_JSI11i_2	125.01	109.38			0.84755	0.91981	11.746	8	1	Median	1.2157	1.0247	0.22494	2	0	Median	0.75837	0.91149	12.003	2	0	Median	0.91932	0.92801	11.972	2	0	Median	0.75165	0.799	7.1232	2	1	Median	2158700000	1096300000	1062500000	339740000	140150000	199600000	609220000	360020000	249200000	825320000	386250000	439060000	384450000	209840000	174610000	12320	930	11674	75627;75628;75629;75630;75631;75632;75633;75634	102232;102233;102234;102235;102236;102237;102238;102239;102240;102241;102242;102243;102244;102245;102246	102244			15	
ELEEWYARQDEQLQK	1	Unmodified	1963.9276	0.92756992	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	51.672	50.719	3	0.00052596	44730	160511_QHF_FH_JSI10i_2	62.813	52.179			1.0925	1.3367	17.785	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0925	1.3367	NaN	1	0	Median	1.4516	1.5048	NaN	1	0	Median	0.92083	1.0607	NaN	1	1	Median	274480000	111700000	162780000	0	0	0	128780000	63792000	64984000	91368000	26827000	64541000	54336000	21083000	33253000	12321	930	11675	75635;75636;75637	102247;102248;102249	102249			3	
ELEEYLEK	1	Unmodified	1051.5074	0.50735659	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.875	43.653	2	0.0071487	38744	160511_QHF_FH_JSI9i_1	69.812	34.456			2.4422	2.02	NaN	1	1	Median	2.4422	2.02	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46118000	17693000	28425000	46118000	17693000	28425000	0	0	0	0	0	0	0	0	0	12322	5214	11676	75638	102250	102250			1	
ELEFLGWYTTGGPPDPSDIHVHK	1	Unmodified	2594.2442	0.24415304	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4		2	1	4	86.825	82.51	3;4	4.7718E-36	43233	160513_QHF_FH_JSI10Kac_6	217.86	189.36			1.1359	1.213	18.112	7	5	Median	NaN	NaN	NaN	0	0	Median	1.0577	1.2615	10.717	2	2	Median	1.437	1.3509	NaN	1	1	Median	1.0926	1.1421	20.873	4	2	Median	514950000	290890000	224060000	0	0	0	339870000	197330000	142550000	16945000	8378900	8566300	158130000	85185000	72946000	12323	3232	11677	75639;75640;75641;75642;75643;75644;75645	102251;102252;102253;102254;102255;102256;102257;102258;102259;102260	102260			10	
ELEFLSMANVELSSLAR	0	Unmodified	1907.9663	0.96626362	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2.25	0.433		3	1							1		1	2	102.02	101.94	2	1.8003E-65	89713	160511_QHF_FH_JSI11i_2	228.93	198.38			0.94203	1.0554	15.866	4	0	Linear	1.1348	0.9678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0268	1.0538	NaN	1	0	Median	0.78677	0.84382	19.902	2	0	Median	1295800000	610940000	684890000	330050000	147110000	182940000	0	0	0	554610000	256060000	298540000	411170000	207770000	203410000	12324	4419	11678	75646;75647;75648;75649	102261;102262	102262			1	
ELEFYLR	0	Unmodified	968.49673	0.49673232	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	63.669	62.817	2	0.00021507	55335	160511_QHF_FH_JSI9i_2	138.07	73.209			0.96706	1.0165	38.826	6	0	Median	1.1938	0.98247	18.017	2	0	Median	0.95842	1.1679	NaN	1	0	Median	0.65454	0.62505	57.782	2	0	Median	0.97577	1.0986	NaN	1	0	Median	543600000	283730000	259860000	132280000	57913000	74366000	85241000	54406000	30834000	169540000	92237000	77307000	156530000	79177000	77356000	12325	1985	11679	75650;75651;75652;75653;75654;75655	102263;102264;102265;102266;102267;102268;102269;102270	102268			8	
ELEFYLRK	1	Unmodified	1096.5917	0.59169534	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.35		9	6						7	5	8	5	4	53.448	49.77	2;3	3.65E-07	43499	160511_QHF_FH_JSI11i_3	136.16	37.856			1.137	1.0813	39.289	18	7	Median	1.3217	1.1048	23.887	5	1	Median	0.8288	1.0069	47.729	6	3	Median	1.1983	1.1674	39.695	4	2	Median	0.74731	0.77362	11.568	3	1	Plateau	8935300000	4159000000	4776300000	808270000	375880000	432390000	2195700000	1036800000	1158900000	2814500000	1271100000	1543400000	3116800000	1475200000	1641600000	12326	1985	11680	75656;75657;75658;75659;75660;75661;75662;75663;75664;75665;75666;75667;75668;75669;75670;75671;75672;75673;75674;75675;75676;75677	102271;102272;102273;102274;102275;102276;102277;102278;102279;102280;102281;102282;102283;102284;102285;102286;102287;102288;102289;102290;102291;102292;102293;102294;102295;102296;102297;102298;102299;102300;102301;102302;102303;102304;102305;102306;102307	102271			37	
ELEGLQVK	1	Unmodified	914.5073	0.50729701	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.548	35.941	2	0.00067397	32040	160511_QHF_FH_JSI10i_1	100.45	32.029			1.3651	1.4522	25.324	4	0	Median	2.1854	1.7938	NaN	1	0	Median	1.1605	1.3552	NaN	1	0	Median	1.6057	1.5562	NaN	1	0	Median	0.96292	0.99175	NaN	1	0	Median	595440000	251950000	343490000	90100000	26919000	63181000	148020000	65548000	82474000	165850000	63647000	102200000	191470000	95832000	95637000	12327	1493	11681	75678;75679;75680;75681	102308;102309;102310;102311	102310			4	
ELEGVITK	1	Unmodified	887.4964	0.49639797	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		32.465	31.852	2	0.011899	28448	160511_QHF_FH_JSI11i_1	62.582	30.112			0.63928	0.75329	98.597	3	3	Median	4.1176	3.3598	NaN	1	1	Median	0.63928	0.75329	NaN	1	1	Median	0.53138	0.52249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	362610000	172170000	190440000	102310000	25745000	76563000	142750000	88983000	53763000	117560000	57438000	60118000	0	0	0	12328	446	11682	75682;75683;75684	102312;102313;102314	102312			3	
ELEIAQDR	0	Unmodified	972.48762	0.4876242	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	25.304	24.656	2	0.0049375	21275	160511_QHF_FH_JSI9i_1	67.169	12.964			1.1099	0.92041	23.581	3	2	Plateau	1.1099	0.92041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69044	0.67686	NaN	1	1	Median	1.0282	1.0759	NaN	1	1	Median	697800000	371130000	326670000	215260000	98272000	116990000	0	0	0	247100000	148930000	98175000	235430000	123930000	111500000	12329	1016	11683	75685;75686;75687	102315;102316;102317	102317			3	
ELEIEER	0	Unmodified	916.45018	0.45017606	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.369	25.075	2	0.01211	22040	160511_QHF_FH_JSI10i_1	75.189	6.0136			1.0029	1.1806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0029	1.1806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142310000	76611000	65702000	0	0	0	142310000	76611000	65702000	0	0	0	0	0	0	12330	2502	11684	75688	102318;102319	102319			2	
ELEIEERER	0	Unmodified	1201.5939	0.59388018	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	21.017	20.525	2;3	7.5572E-05	17442	160511_QHF_FH_JSI9i_2	111.06	14.392			1.0851	1.1124	33.388	8	2	Median	1.6403	1.4037	38.383	2	0	Median	1.2314	1.5095	37.695	2	0	Median	1.0181	0.99777	23.179	2	1	Median	0.87625	0.87144	12.992	2	1	Median	820130000	398030000	422090000	188120000	81288000	106830000	211960000	119520000	92440000	213280000	80976000	132300000	206780000	116250000	90524000	12331	2502	11685	75689;75690;75691;75692;75693;75694;75695;75696	102320;102321;102322;102323;102324	102321			5	
ELEIGQAGSQR	0	Unmodified	1186.5942	0.59421454	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	26.236	25.597	2	0.00075518	22659	160511_QHF_FH_JSI12i_1	85.622	33.14			0.99286	1.0242	22.345	5	0	Median	0.9263	0.76392	NaN	1	0	Median	1.0111	1.206	23.109	2	0	Median	0.99286	0.96408	NaN	1	0	Median	1.0544	1.0863	NaN	1	0	Median	420100000	215760000	204330000	99816000	64320000	35496000	129480000	70893000	58590000	88544000	35744000	52801000	102250000	44805000	57449000	12332	2605	11686	75697;75698;75699;75700;75701	102325;102326	102326			2	
ELEKTYSAK	2	Acetyl (K)	1109.5605	0.56045479	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	32.613	24.073	2	0.0048608	13735	160513_QHF_FH_JSI10Kac_3	74.464	65.932			0.69004	0.76562	70.782	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1068	1.3171	NaN	1	0	Median	0.32698	0.32361	NaN	1	0	Median	0.69004	0.76562	NaN	1	0	Median	67289000	42971000	24318000	0	0	0	20632000	9561500	11070000	32158000	23634000	8524100	14499000	9775600	4723600	12333	791	11687	75702;75703;75704	102327;102328;102329;102330	102330	414;415		4	
ELEKVCNPIITK	2	Acetyl (K)	1484.7909	0.79086543	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.4						4	1				2	2	1	69.224	59.533	2	0.0036005	30558	160513_QHF_FH_JSI12Kac_3	69.01	44.156			1.113	1.3023	184.21	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.113	1.3023	NaN	1	0	Median	45.18	44.43	NaN	1	1	Median	2.8101	3.0495	NaN	1	0	Median	13925000	7725200	6199500	0	0	0	6721400	3723600	2997800	4502600	3266000	1236600	2700700	735640	1965000	12334	985	11688	75705;75706;75707;75708;75709	102331;102332;102333;102334;102335	102334	776		5	
ELELAHR	0	Unmodified	866.46102	0.46101552	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	15.925	15.709	2;3	0.023312	12425	160511_QHF_FH_JSI12i_3	63.306	35.2			0.51059	0.51062	15.197	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62218	0.56855	NaN	1	1	Median	0.41902	0.4586	NaN	1	1	Median	138980000	74481000	64501000	0	0	0	16315000	0	16315000	51677000	27702000	23975000	70990000	46779000	24211000	12335	3115	11689	75710;75711;75712	102336;102337;102338	102338			3	
ELELVQNAFFTDPNDQSAWFYHR	0	Unmodified	2826.3038	0.30379318	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	91.478	83.497	3	2.5761E-107	48593	160513_QHF_FH_JSI10Kac_6	239.1	218.44			0.94066	0.93261	18.169	3	0	Plateau	1.0835	0.93261	NaN	1	0	Median	1.0489	1.2551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84356	0.90248	NaN	1	0	Median	404530000	198190000	206340000	86654000	30809000	55845000	154970000	82473000	72500000	0	0	0	162900000	84906000	77992000	12336	3873	11690	75713;75714;75715	102339;102340;102341;102342;102343;102344	102344			6	
ELEMIGFIENNVSK	1	Unmodified	1621.8022	0.8021584	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.421	3	10								3	3	3	4	93.948	93.57	2;3	3.1075E-21	82205	160511_QHF_FH_JSI9i_2	171.05	124.59			1.3628	1.5496	69.003	13	9	Median	0.99019	0.84747	75.631	3	2	Median	0.40675	0.48172	81.211	3	2	Plateau	0.8574	0.83159	69.796	3	3	Median	2.0005	2.071	76.18	4	2	Median	455410000	217030000	238380000	119490000	45309000	74183000	100170000	59983000	40187000	87016000	46292000	40724000	148730000	65447000	83282000	12337	2692	11691	75716;75717;75718;75719;75720;75721;75722;75723;75724;75725;75726;75727;75728	102345;102346;102347;102348;102349;102350;102351;102352;102353;102354;102355;102356;102357;102358;102359;102360;102361;102362;102363	102352			19	
ELENANDLLSATK	1	Unmodified	1416.7096	0.70963822	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	3	1	1	60.034	56.865	2	2.4334E-06	50383	160511_QHF_FH_JSI9i_1	176.18	132.74			0.64857	0.69024	35.008	7	7	Median	0.85419	0.69648	36.526	2	2	Median	0.58118	0.69024	26.112	3	3	Median	1.2669	1.2339	NaN	1	1	Median	0.43463	0.4745	NaN	1	1	Median	1219800000	691700000	528070000	444480000	235670000	208810000	510830000	327890000	182940000	261970000	126310000	135660000	2488300	1827500	660840	12338	1016	11692	75729;75730;75731;75732;75733;75734;75735	102364;102365;102366;102367;102368;102369;102370	102368			7	
ELENEENQEEQGLEEK	1	Unmodified	1945.8389	0.83887408	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	31.64	31.105	2	1.1485E-125	27849	160511_QHF_FH_JSI11i_1	319.58	303.82			1.1213	1.1097	31.448	6	4	Median	1.28	1.0622	NaN	1	0	Median	0.98223	1.1592	NaN	1	0	Median	1.0244	0.97107	46.824	2	2	Median	1.1284	1.1627	48.63	2	2	Median	453550000	217390000	236160000	57682000	27990000	29692000	123200000	53858000	69341000	142240000	72264000	69974000	130440000	63280000	67156000	12339	3420	11693	75736;75737;75738;75739;75740;75741	102371;102372;102373;102374;102375;102376;102377;102378;102379	102372			9	
ELENLATSLEHYK	1	Unmodified	1545.7675	0.76748745	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	63.451	62.646	2;3	2.1002E-05	55489	160511_QHF_FH_JSI10i_2	81.619	70.985			0.52033	0.57821	60.472	4	2	Median	NaN	NaN	NaN	0	0	Median	0.74345	0.90903	NaN	1	0	Median	0.32751	0.32816	16.12	2	2	Median	0.83333	0.93824	NaN	1	0	Median	517010000	268790000	248220000	0	0	0	161790000	73127000	88662000	198690000	108570000	90119000	156540000	87095000	69442000	12340	4047	11694	75742;75743;75744;75745	102380;102381;102382;102383	102383			3	
ELENLQK	1	Unmodified	872.46035	0.46034682	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.978	27.659	2	0.03714	24509	160511_QHF_FH_JSI10i_1	50.039	4.3215			0.97878	1.15	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97878	1.15	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58319000	23885000	34434000	0	0	0	58319000	23885000	34434000	0	0	0	0	0	0	12341	4803	11695	75746	102384	102384			1	
ELENTALELSQK	1	Unmodified	1373.7038	0.70382456	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.497	48.28	2	0.0029713	42958	160511_QHF_FH_JSI9i_1	58.476	29.167			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12342	2414	11696	75747	102385	102385			1	
ELENWAGSM	0	Unmodified	1035.4331	0.43314579	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.217	61.582	2	6.1812E-05	55771	160511_QHF_FH_JSI10i_1	97.093	82.318			0.97534	0.97416	24.042	4	0	Median	1.3425	1.0882	NaN	1	0	Median	0.54072	0.64422	NaN	1	0	Median	0.92021	0.89857	NaN	1	0	Median	1.0338	1.0561	NaN	1	0	Median	231660000	127880000	103770000	50400000	23843000	26557000	60638000	45192000	15447000	54187000	25064000	29123000	66430000	33786000	32643000	12343	4708	11697	75748;75749;75750;75751	102386;102387;102388;102389;102390	102389			5	
ELEPEAAEEALENGPK	1	Unmodified	1724.8105	0.81047448	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	64.538	63.934	2;3	3.2946E-40	56740	160511_QHF_FH_JSI9i_1	205.31	179.27			1.0705	0.98752	28.079	10	4	Median	1.1464	0.94718	7.7771	2	0	Median	0.87728	1.0315	28.825	2	0	Median	1.023	0.97449	37.958	3	2	Median	1.2375	1.3039	30.03	3	2	Median	1446500000	756530000	689940000	219910000	87925000	131980000	363940000	194920000	169020000	491920000	307480000	184440000	370710000	166200000	204510000	12344	4700	11698	75752;75753;75754;75755;75756;75757;75758;75759;75760;75761	102391;102392;102393;102394;102395;102396;102397;102398;102399;102400;102401;102402;102403;102404;102405;102406	102405			16	
ELEPEMEFEIEPDK	1	Unmodified	1733.7706	0.7705835	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.146	75.6	2	3.5081E-06	68897	160511_QHF_FH_JSI12i_1	124.6	113.39			0.64326	0.66171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64326	0.66171	NaN	1	1	Median	99872000	50242000	49630000	0	0	0	0	0	0	0	0	0	99872000	50242000	49630000	12345	4686	11699	75762	102407	102407			1	
ELEPFLLR	0	Unmodified	1015.5702	0.57023162	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	73.409	72.459	2	0.0057259	62522	160511_QHF_FH_JSI12i_2	64.757	25.095			1.9037	2.004	3.6674	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9368	1.9527	NaN	1	1	Median	1.8711	2.0567	NaN	1	0	Median	43635000	17536000	26099000	0	0	0	0	0	0	23912000	10265000	13648000	19723000	7271400	12451000	12346	183	11700	75763;75764;75765	102408;102409;102410	102408			3	
ELEQANDDLER	0	Unmodified	1330.6001	0.60008777	4594	Q9NXR1;Q9GZM8	NDE1;NDEL1	Nuclear distribution protein nudE homolog 1;Nuclear distribution protein nudE-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	24.799	24.243	2	3.1396E-05	21265	160511_QHF_FH_JSI10i_1	104.79	86.05			0.79633	0.76642	34.044	4	4	Median	0.854	0.68985	NaN	1	1	Median	0.74255	0.8515	NaN	1	1	Median	0.66687	0.63807	NaN	1	1	Median	1.3412	1.3616	NaN	1	1	Median	94945000	57686000	37260000	18843000	13159000	5684600	26685000	17911000	8773700	22434000	12699000	9734300	26984000	13917000	13067000	12347	4594	11701	75766;75767;75768;75769;75770	102411;102412;102413;102414;102415	102414			5	
ELEQEAK	1	Unmodified	845.41306	0.41306227	2157;1847	P55081;Q00653	MFAP1;NFKB2	Microfibrillar-associated protein 1;Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	no	no	0	0	0	0			By MS/MS		13	0						1						1		8.3688	1.0516	2	0.048275	3339	160513_QHF_FH_JSI11Kac_3	49.833	19.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12348	1847;2157	11702	75771	102416	102416			1	
ELEQEEEERKREENTSNESTDVTKGDSK	3	Acetyl (K)	3337.503	0.50295909	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	4		By MS/MS	By MS/MS		16	0									3		2	1		32.466	23.816	4	0.0069421	13339	160513_QHF_FH_JSI11Kac_6	39.783	33.753			1.068	1.1665	57.145	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65542	0.77873	NaN	1	0	Median	1.7403	1.7473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50464000	33811000	16653000	0	0	0	47434000	32366000	15068000	3030000	1445100	1584900	0	0	0	12349	2285	11703	75772;75773;75774	102417;102418;102419	102417	2384;2385		3	
ELEQEREDQK	1	Unmodified	1302.6052	0.60517315	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	6.9062	6.6115	3	0.0011913	4556	160511_QHF_FH_JSI12i_1	50.284	40.629			0.83193	0.90482	18.623	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68068	0.79318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0168	1.0322	NaN	1	0	Median	171360000	75099000	96257000	0	0	0	83967000	34763000	49204000	0	0	0	87390000	40336000	47053000	12350	588	11704	75775;75776;75777	102420;102421	102421			2	
ELEQFSIWNFFSSFLK	1	Unmodified	2020.9935	0.99346464	170	O14524	TMEM194A	Transmembrane protein 194A	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.61	96.887	2;3	1.9291E-32	57309	160513_QHF_FH_JSI10Kac_6	211.77	152.58			0.50341	0.59234	49.06	2	0	Median	NaN	NaN	NaN	0	0	Median	0.50341	0.59234	49.06	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171300000	109720000	61584000	0	0	0	171300000	109720000	61584000	0	0	0	0	0	0	12351	170	11705	75778;75779	102422;102423	102422			2	
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	1	Unmodified	3054.4869	0.48691928	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								2	3	3	3	96.542	96.321	3;4	1.7245E-27	87450	160511_QHF_FH_JSI12i_1	118.43	115.62			0.94205	1.0088	25.812	11	3	Median	1.2951	1.0848	10.267	2	0	Median	0.84695	0.98519	36.19	3	1	Median	0.94205	0.91298	13.525	3	1	Plateau	1.0697	1.1089	19.674	3	1	Median	779090000	398930000	380160000	62925000	24490000	38435000	283600000	180870000	102730000	247860000	122250000	125610000	184710000	71315000	113390000	12352	954	11706	75780;75781;75782;75783;75784;75785;75786;75787;75788;75789;75790	102424;102425;102426;102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437;102438;102439;102440;102441;102442;102443;102444	102430			21	
ELEREESGAAESPALVTPDSEK	1	Unmodified	2343.1078	0.10777871	4049	Q96EK9	KTI12	Protein KTI12 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	42.657	42.162	3	5.8294E-09	38410	160511_QHF_FH_JSI12i_1	98.703	94.397			0.91461	0.91914	6.9717	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9004	0.87492	NaN	1	0	Median	0.92905	0.96558	NaN	1	0	Median	147640000	52705000	94934000	0	0	0	0	0	0	96513000	26226000	70288000	51126000	26480000	24646000	12353	4049	11707	75791;75792	102445;102446;102447;102448	102448			4	
ELESHSSWYAPEALQK	1	Unmodified	1873.8846	0.88464248	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.244	53.877	3	0.0002274	46214	160511_QHF_FH_JSI12i_2	73.834	62.572			0.93802	1.0117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93802	1.0117	NaN	1	1	Median	31549000	15183000	16366000	0	0	0	0	0	0	0	0	0	31549000	15183000	16366000	12354	2446	11708	75793	102449	102449			1	
ELESQISELQEDLESER	0	Unmodified	2032.9437	0.9436735	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	83.505	83.169	2;3	1.1079E-80	75786	160511_QHF_FH_JSI12i_1	242.43	204.03			0.95123	0.92097	21.294	5	0	Median	NaN	NaN	NaN	0	0	Median	0.70492	0.82886	14.024	2	0	Median	0.95123	0.92097	NaN	1	0	Median	1.1759	1.2279	2.4675	2	0	Median	239950000	136470000	103480000	0	0	0	117480000	82122000	35353000	45906000	18672000	27234000	76564000	35675000	40889000	12355	1436	11709	75794;75795;75796;75797;75798	102450;102451;102452;102453;102454;102455;102456;102457;102458;102459	102455			10	
ELESQVSGLEK	1	Unmodified	1217.6139	0.61394692	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	39.004	35.576	2	2.1358E-09	32025	160511_QHF_FH_JSI12i_1	131.09	88.978			0.90678	0.95839	13.48	6	1	Median	1.2233	1.019	NaN	1	0	Median	0.88206	1.0395	NaN	1	0	Median	1.0429	1.0155	16.846	2	0	Median	0.77859	0.82767	5.1138	2	1	Median	853440000	410790000	442650000	164330000	67722000	96605000	256140000	144660000	111490000	264200000	115020000	149190000	168770000	83400000	85371000	12356	5213	11710	75799;75800;75801;75802;75803;75804	102460;102461;102462;102463;102464;102465;102466;102467;102468;102469;102470	102462			11	
ELESSEEGGSAEER	0	Unmodified	1507.6274	0.62742474	4826	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	12.202	11.578	2	1.2053E-06	9455	160511_QHF_FH_JSI12i_1	134.75	102.23			1.2505	1.1434	17.268	2	1	Median	1.583	1.2919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98782	1.012	NaN	1	0	Median	51170000	23454000	27716000	17505000	4999800	12505000	0	0	0	0	0	0	33665000	18454000	15210000	12357	4826	11711	75805;75806;75807	102471;102472;102473	102471			3	
ELETGPK	1	Unmodified	772.39668	0.39668393	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	10.904	8.256	2	0.0084038	7610	160511_QHF_FH_JSI12i_1	83.614	49.876			1.235	1.3358	25.344	6	2	Median	1.802	1.4804	NaN	1	0	Median	1.0143	1.2054	NaN	1	0	Median	1.1986	1.166	40.087	2	1	Median	1.2077	1.291	34.544	2	1	Median	1743300000	804440000	938870000	460110000	174290000	285820000	444240000	230630000	213610000	359480000	168510000	190970000	479490000	231020000	248470000	12358	2522	11712	75808;75809;75810;75811;75812;75813	102474;102475;102476;102477;102478	102475			5	
ELETMRK	1	Unmodified	905.46405	0.46405199	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	9.5318	9.5643	2;3	0.025821	7156	160511_QHF_FH_JSI11i_3	68.422	18.382			0.48736	0.49819	105.87	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9774	0.93126	140.75	2	2	Median	0.48736	0.49819	NaN	1	1	Median	615690000	333270000	282420000	0	0	0	0	0	0	358700000	191540000	167160000	256990000	141730000	115250000	12359	1636	11713	75814;75815;75816	102479;102480;102481	102479			3	
ELETVAAHQFPEVR	0	Unmodified	1624.8209	0.82092001	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	51.743	50.857	2;3	5.5196E-40	43907	160511_QHF_FH_JSI11i_2	202.44	179.12			1.1185	1.1124	13.994	5	1	Median	1.472	1.2522	NaN	1	1	Median	0.76978	0.94158	NaN	1	0	Median	1.0185	1.0214	12.076	2	0	Median	1.1222	1.2304	NaN	1	0	Median	376460000	177210000	199250000	21651000	6408400	15242000	38412000	20225000	18187000	294740000	139800000	154930000	21661000	10771000	10889000	12360	3951	11714	75817;75818;75819;75820;75821;75822;75823	102482;102483;102484;102485;102486;102487;102488;102489;102490;102491	102488			10	
ELETVCNDVLSLLDK	1	Unmodified	1746.871	0.87096625	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.46	101.36	2	8.8389E-07	92088	160511_QHF_FH_JSI11i_1	141.58	112.63			1.6135	1.5847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6135	1.5847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120730000	61000000	59731000	0	0	0	0	0	0	120730000	61000000	59731000	0	0	0	12361	2224	11715	75824	102492	102492			1	
ELETVDFK	1	Unmodified	979.48623	0.48622722	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	1	2	3	44.974	42.947	1;2	0.00024549	38299	160511_QHF_FH_JSI9i_1	116.73	67.367			1.1728	1.3104	52.834	7	3	Median	2.0045	1.6527	NaN	1	0	Median	1.133	1.3104	NaN	1	0	Median	1.0794	1.0461	102.64	2	2	Median	1.1728	1.2468	47.146	3	1	Median	4747000000	2296600000	2450400000	732890000	316360000	416530000	1173400000	553060000	620390000	1761200000	835470000	925760000	1079400000	591680000	487760000	12362	1464	11716	75825;75826;75827;75828;75829;75830;75831	102493;102494;102495;102496;102497;102498;102499;102500;102501;102502;102503;102504	102503			12	
ELETVDFKDK	2	Acetyl (K)	1264.6187	0.61869795	1464	P36952	SERPINB5	Serpin B5	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		62.07	52.457	2	0.03631	27478	160513_QHF_FH_JSI11Kac_3	46.001	21.226			0.3233	0.32425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3233	0.32425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5486200	4144300	1341900	0	0	0	0	0	0	5486200	4144300	1341900	0	0	0	12363	1464	11717	75832	102505	102505			1	
ELEVAEGGK	1	Unmodified	930.46583	0.46582612	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.7	8	1				5				3	3	4	4	20.522	16.756	2	1.2933E-05	15438	160511_QHF_FH_JSI11i_1	124.98	45.867			0.82065	0.8965	68.469	13	9	Median	1.2662	1.2308	70.957	3	2	Median	0.79954	0.8965	57.27	3	2	Median	0.71329	0.70398	85.25	4	3	Median	0.82065	0.84593	88.957	3	2	Median	7810700000	3627000000	4183700000	3278800000	1443500000	1835300000	1399500000	747780000	651760000	1679400000	776610000	902740000	1453000000	659060000	793940000	12364	2738	11718	75833;75834;75835;75836;75837;75838;75839;75840;75841;75842;75843;75844;75845;75846	102506;102507;102508;102509;102510;102511;102512;102513;102514;102515;102516;102517;102518;102519;102520;102521	102506			15	
ELEVAEGGKAELER	1	Acetyl (K)	1570.7839	0.7838658	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15	1							2		2			4		61.909	51.524	2	5.2935E-09	27994	160513_QHF_FH_JSI11Kac_6	121.08	60.642			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12365	2738	11719	75847;75848;75849;75850	102522;102523;102524;102525	102523	2656		4	
ELEVLLMCNK	1	Unmodified	1247.6254	0.62538001	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	71.119	70.436	2	8.8867E-06	61639	160511_QHF_FH_JSI11i_2	118.5	76.619			0.5107	0.51326	73.396	3	1	Plateau	0.75242	0.65556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5107	0.51326	NaN	1	0	Median	2.0192	2.0316	NaN	1	1	Median	164790000	101330000	63460000	32045000	18663000	13382000	0	0	0	104520000	71293000	33226000	28229000	11377000	16852000	12366	2037	11720	75851;75852;75853;75854	102526;102527;102528	102528			3	
ELEVQHPAAK	1	Unmodified	1120.5877	0.58767259	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	5.78	6	10	10				6	6		8	10	10	10	18.096	14.583	2;3	8.8961E-10	12282	160511_QHF_FH_JSI12i_2	137.14	95.483			0.92608	0.94074	57.647	34	15	Median	1.0184	0.87034	27.011	7	4	Median	0.74748	0.87806	43.498	10	3	Median	1.0283	1.0425	37.751	9	5	Median	0.91946	0.99081	99.402	8	3	Median	10393000000	4958300000	5434400000	1374300000	616740000	757550000	1754400000	986900000	767530000	4247300000	1876400000	2370900000	3016800000	1478300000	1538500000	12367	1721	11721	75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868;75869;75870;75871;75872;75873;75874;75875;75876;75877;75878;75879;75880;75881;75882;75883;75884;75885;75886;75887;75888;75889;75890;75891;75892	102529;102530;102531;102532;102533;102534;102535;102536;102537;102538;102539;102540;102541;102542;102543;102544;102545;102546;102547;102548;102549;102550;102551;102552;102553;102554;102555;102556;102557;102558;102559;102560;102561;102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574;102575	102533			45	
ELFALHPSPDEEEPIER	0	Unmodified	2006.9585	0.9585357	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	63.867	63.724	2;3	2.798E-11	55108	160511_QHF_FH_JSI12i_3	144.05	117.9			1.2339	1.174	0.19767	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.264	1.1723	NaN	1	0	Median	1.2045	1.1756	NaN	1	0	Median	240220000	109610000	130610000	0	0	0	0	0	0	111970000	55740000	56228000	128250000	53867000	74381000	12368	4181	11722	75893;75894;75895	102576;102577;102578;102579	102579			4	
ELFDDPSYVNVQNLDK	1	Unmodified	1894.8949	0.89487281	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.096	76.618	2	5.7015E-81	69739	160511_QHF_FH_JSI11i_1	249.69	217.93			0.80799	0.85669	12.186	4	0	Median	1.0878	0.9195	NaN	1	0	Median	0.79964	0.94698	NaN	1	0	Median	0.81644	0.79816	NaN	1	0	Median	0.70892	0.73056	NaN	1	0	Median	280120000	159430000	120680000	66127000	29606000	36520000	73997000	45929000	28068000	85821000	51857000	33963000	54171000	32039000	22133000	12369	1319	11723	75896;75897;75898;75899	102580;102581;102582;102583;102584;102585;102586;102587;102588;102589	102582			10	
ELFDELVK	1	Unmodified	991.52261	0.52261272	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	3	2	2	67.74	65.603	2	0.0016104	57282	160511_QHF_FH_JSI11i_2	87.181	60.044			0.92253	1.0228	33.923	7	2	Median	1.01	0.88381	NaN	1	0	Median	0.8266	0.99687	11.306	2	1	Median	0.89788	0.90284	17.978	2	0	Median	1.376	1.5102	55.106	2	1	Median	834580000	437090000	397480000	125430000	60744000	64686000	270400000	150550000	119850000	270090000	133540000	136550000	168660000	92263000	76396000	12370	1856	11724	75900;75901;75902;75903;75904;75905;75906;75907	102590;102591;102592;102593;102594;102595;102596;102597;102598;102599;102600;102601;102602	102599			13	
ELFDFYNK	1	Unmodified	1074.5022	0.50221163	5724	Q9Y6G5	COMMD10	COMM domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		66.666	65.931	2	0.010658	57447	160511_QHF_FH_JSI11i_2	63.48	38.557			11.312	10.585	69.268	2	2	Median	7.6042	6.4862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16.828	17.275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	315530000	35001000	280530000	89489000	15600000	73889000	0	0	0	226050000	19401000	206640000	0	0	0	12371	5724	11725	75908;75909	102603;102604	102604			2	
ELFDKANK	2	Acetyl (K)	1005.5131	0.51311067	3510	Q8N2U0	TMEM256	Transmembrane protein 256	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	43.295	33.766	2	0.0049275	19594	160513_QHF_FH_JSI12Kac_4	86.833	24.174			0.53578	0.55828	192.29	6	1	Median	NaN	NaN	NaN	0	0	Median	1.538	1.8353	2.523	2	0	Median	0.38678	0.38154	9.3149	2	0	Median	0.080392	0.088627	304.79	2	1	Median	169270000	103430000	65841000	0	0	0	42684000	16761000	25923000	94475000	64957000	29518000	32110000	21710000	10400000	12372	3510	11726	75910;75911;75912;75913;75914;75915	102605;102606;102607;102608;102609	102608	2875		5	
ELFDVVANPLVNDLIHGK	1	Unmodified	1992.068	0.068026571	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.67	101.55	3	1.3045E-05	89290	160511_QHF_FH_JSI11i_2	81.723	64.645			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12373	2186	11727	75916	102610	102610			1	
ELFEMWK	1	Unmodified	981.46299	0.46298935	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	72.868	71.913	2	0.010719	63064	160511_QHF_FH_JSI11i_2	73.616	32.314			0.86567	0.93033	15.332	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0248	1.0369	NaN	1	0	Median	0.73122	0.83475	NaN	1	0	Median	116440000	64589000	51850000	0	0	0	0	0	0	63101000	32466000	30635000	53338000	32123000	21215000	12374	4811	11728	75917;75918	102611;102612	102612			2	
ELFEQYGAVYEINVLR	0	Unmodified	1941.9836	0.98362824	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		97.554	97.338	2	0.0008557	85391	160511_QHF_FH_JSI11i_2	63.727	49.469			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12375	3897	11729	75919	102613	102613			1	
ELFFLPLGFALK	1	Unmodified	1393.801	0.80095983	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	98.859	89.432	2	1.0068E-06	51490	160513_QHF_FH_JSI9Kac_6	113.22	87.833			1.06	1.0766	9.5546	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2131	1.1519	NaN	1	0	Median	0.92618	1.0063	NaN	1	0	Median	111440000	59382000	52061000	0	0	0	0	0	0	51856000	23179000	28677000	59587000	36203000	23384000	12376	4816	11730	75920;75921;75922	102614;102615	102615			2	
ELFGIHVAEVTYK	1	Unmodified	1504.7926	0.79257999	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.007	70.715	3	0.053316	60930	160511_QHF_FH_JSI12i_2	25.53	16.709			0.57504	0.65291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57504	0.65291	NaN	1	1	Median	9745400	4424900	5320500	0	0	0	0	0	0	0	0	0	9745400	4424900	5320500	12377	4747	11731	75923	102616	102616			1	
ELFGPELFR	0	Unmodified	1106.576	0.57604528	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	3	1	80.614	79.887	2	3.6819E-08	70253	160511_QHF_FH_JSI11i_2	147.19	125.1			1.0142	1.0809	13.796	8	3	Median	1.298	1.1024	5.3165	2	0	Median	0.87474	1.0617	4.1695	2	0	Median	1.0491	1.0686	23.088	3	2	Median	0.98044	1.1003	NaN	1	1	Median	528390000	257840000	270550000	94922000	43317000	51604000	130150000	62834000	67319000	186920000	92264000	94655000	116390000	59423000	56970000	12378	1428	11732	75924;75925;75926;75927;75928;75929;75930;75931	102617;102618;102619;102620;102621;102622;102623;102624;102625	102624			9	
ELFLGKIK	2	Acetyl (K)	988.59572	0.59571809	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		76.921	66.326	2	0.0016777	35328	160513_QHF_FH_JSI11Kac_5	114.6	23.561			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12379	4777	11733	75932;75933	102626;102627	102627	3228		2	
ELFLIMNSYR	0	Unmodified	1284.6536	0.65364367	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.5	6.06		1							3	1	1		2	82.962	75.078	2	0.0021182	72319	160511_QHF_FH_JSI12i_2	65.347	36.948			0.91662	1.0328	54.512	3	2	Plateau	0.50379	0.44063	NaN	1	1	Median	0.93121	1.1118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.39416	0.42498	NaN	1	1	Median	142150000	92472000	49673000	36006000	24082000	11924000	90613000	57061000	33552000	0	0	0	15527000	11330000	4197100	12380	3022	11734	75934;75935;75936;75937	102628;102629;102630;102631	102628			4	
ELFLLGQHYVFEAK	1	Unmodified	1692.8875	0.88754301	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.6	6.86		3							2	2	2	1		84.909	81.726	3	1.4946E-07	40546	160513_QHF_FH_JSI9Kac_6	106.96	89.044			1.0012	0.88795	27.858	5	1	Median	1.1759	1.0073	22.661	2	0	Median	0.61735	0.74759	24.332	2	1	Median	1.245	1.2594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	356910000	182770000	174140000	139720000	66536000	73182000	189850000	105980000	83869000	27343000	10254000	17089000	0	0	0	12381	4047	11735	75938;75939;75940;75941;75942	102632;102633;102634;102635	102634			4	
ELFLLRK	1	Unmodified	917.56984	0.56983769	3395	Q8IUD2;O15083	ERC1;ERC2	ELKS/Rab6-interacting/CAST family member 1;ERC protein 2	yes	no	0	0	0	1			By MS/MS		3	0			1									1		49.528	49.528	2	0.027794	43704	160511_QHF_FH_JSI11i_3	64.523	7.1883			1.9823	1.8568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9823	1.8568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35682000	13158000	22524000	0	0	0	0	0	0	35682000	13158000	22524000	0	0	0	12382	3395	11736	75943	102636	102636			1	
ELFLTAGGAGGLHLWK	1	Unmodified	1668.8988	0.8987764	4178	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.034	88.945	3	3.8415E-06	77248	160511_QHF_FH_JSI12i_3	117.08	107.29			1.0989	1.1471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0989	1.1471	NaN	1	0	Median	59301000	23028000	36273000	0	0	0	0	0	0	0	0	0	59301000	23028000	36273000	12383	4178	11737	75944	102637;102638	102638			2	
ELFPIAAQVDK	1	Unmodified	1229.6656	0.66558856	1093	P16219	ACADS	Short-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				69.242	68.357	2	0.006946	60248	160511_QHF_FH_JSI9i_2	52.79	23.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12384	1093	11738	75945	102639	102639			1	
ELFPIQMEGVK	1	Unmodified	1289.669	0.66895938	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.03	4	6	3				1	5		6	4	4	5	78.543	74.388	2	9.021E-06	67026	160511_QHF_FH_JSI11i_2	103.7	75.958			0.99056	0.99227	18.972	17	6	Median	1.0578	0.88722	15.979	4	1	Median	0.82943	0.97402	12.539	4	2	Median	0.98504	0.99447	24.009	4	1	Median	1.0101	1.1019	14.548	5	2	Median	3225000000	1648500000	1576400000	477300000	247550000	229750000	637500000	359700000	277810000	1015100000	541800000	473340000	1095000000	499480000	595530000	12385	754	11739	75946;75947;75948;75949;75950;75951;75952;75953;75954;75955;75956;75957;75958;75959;75960;75961;75962;75963;75964	102640;102641;102642;102643;102644;102645;102646;102647;102648;102649;102650;102651;102652;102653;102654;102655;102656;102657;102658;102659;102660;102661;102662;102663;102664;102665;102666;102667;102668;102669;102670;102671;102672;102673	102663			33	
ELFPLLFK	1	Unmodified	1005.5899	0.58990443	2616	Q15048	LRRC14	Leucine-rich repeat-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		100.28	100.18	2	0.0045282	87957	160511_QHF_FH_JSI11i_2	68.422	50.386			0.82335	0.80232	7.7443	3	1	Plateau	0.87824	0.77572	NaN	1	0	Median	0.57495	0.6921	NaN	1	1	Median	0.82335	0.80232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20841000	12146000	8694800	5235600	2988500	2247100	7661300	4541400	3119900	7943800	4616000	3327800	0	0	0	12386	2616	11740	75965;75966;75967	102674;102675;102676	102675			3	
ELFPVFTHLPFPK	1	Unmodified	1570.8548	0.85478632	3155	Q6UWU4	C6orf89	Bombesin receptor-activated protein C6orf89	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	101.14	101.14	3	3.9292E-06	90164	160511_QHF_FH_JSI11i_3	122.46	111.61			0.94225	0.91824	4.977	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93941	0.88649	NaN	1	0	Median	0.94511	0.95113	NaN	1	0	Median	75434000	37896000	37538000	0	0	0	0	0	0	29241000	12380000	16861000	46193000	25516000	20678000	12387	3155	11741	75968;75969	102677	102677			1	
ELFPVLQK	1	Unmodified	972.56442	0.56441796	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	66.024	65.094	2	0.0025035	56855	160511_QHF_FH_JSI11i_2	79.597	51.49			0.99955	1.0653	1.717	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0612	1.0783	NaN	1	0	Median	0.94145	1.0525	NaN	1	0	Median	57311000	26287000	31024000	0	0	0	0	0	0	28207000	14073000	14134000	29104000	12214000	16890000	12388	3127	11742	75970;75971;75972	102678;102679;102680	102680			3	
ELFQTPDHTEESTTDDK	1	Unmodified	1991.8596	0.85960952	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	35.511	35.042	2	7.735E-08	31293	160511_QHF_FH_JSI10i_1	100.55	85.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12389	1576	11743	75973;75974	102681;102682	102682			2	
ELFQTPGHTEEAVAAGK	1	Unmodified	1783.8741	0.87407779	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							2	3	4	5	44.035	43.286	2;3	1.6009E-22	36989	160511_QHF_FH_JSI12i_2	165.45	146.24			1.0924	1.153	20.828	9	1	Median	0.92063	0.78962	NaN	1	0	Median	0.67525	0.84278	NaN	1	0	Median	1.3603	1.3678	11.754	3	0	Median	1.057	1.1287	7.218	4	1	Median	862680000	442220000	420470000	93694000	54368000	39326000	114700000	71414000	43285000	337880000	156410000	181470000	316410000	160030000	156380000	12390	1576	11744	75975;75976;75977;75978;75979;75980;75981;75982;75983;75984;75985;75986;75987;75988	102683;102684;102685;102686;102687;102688;102689;102690;102691;102692;102693;102694;102695;102696;102697;102698;102699;102700;102701;102702;102703	102686			21	
ELFQTPGHTEELVAAGK	1	Unmodified	1825.921	0.92102798	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	57.21	56.294	2	5.7454E-11	49446	160511_QHF_FH_JSI9i_2	107.85	83.555			1.0571	1.1002	16.314	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2259	1.2347	NaN	1	0	Median	0.91153	0.98031	NaN	1	1	Median	52011000	30342000	21668000	0	0	0	14473000	14473000	0	24830000	11169000	13661000	12707000	4699700	8007300	12391	1576	11745	75989;75990;75991;75992;75993	102704;102705;102706;102707;102708;102709;102710	102706			7	
ELFQTPGHTEESMTDDK	1	Unmodified	1963.8469	0.84693634	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	1	3	43.527	42.735	2;3	1.0404E-05	37238	160511_QHF_FH_JSI9i_2	85.563	75.096			0.76964	0.78079	26.145	5	0	Median	0.76964	0.65298	NaN	1	0	Median	0.62819	0.78079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87972	0.97366	30.558	3	0	Median	341670000	194140000	147530000	60861000	34751000	26111000	87779000	61570000	26209000	5129500	0	5129500	187900000	97815000	90085000	12392	1576	11746	75994;75995;75996;75997;75998;75999	102711;102712;102713;102714	102713			4	
ELFQTPGPSEESMTDEK	1	Unmodified	1923.8408	0.84078833	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	56.534	55.879	2	1.498E-10	49578	160511_QHF_FH_JSI9i_1	136.99	102.61			1.1066	1.2129	40.096	5	4	Median	0.89703	0.73224	NaN	1	1	Median	1.1066	1.3179	NaN	1	1	Median	2.3068	2.1719	NaN	1	0	Median	1.0402	1.0941	14.578	2	2	Median	264590000	119460000	145120000	54897000	28332000	26565000	37095000	18881000	18213000	71666000	25430000	46236000	100930000	46820000	54110000	12393	1576	11747	76000;76001;76002;76003;76004	102715;102716;102717;102718;102719;102720;102721	102721			7	
ELFQTPGTDKPTTDEK	2	Unmodified	1805.8683	0.86832371	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	37.704	37.118	3	8.3865E-05	33140	160511_QHF_FH_JSI10i_1	60.209	34.492			0.96277	1.0002	50.99	7	3	Median	0.57015	0.48082	47.316	2	1	Median	0.77146	0.91111	NaN	1	0	Median	1.3324	1.3413	41.505	2	1	Median	1.0504	1.071	0.092287	2	1	Median	318930000	162700000	156230000	58186000	39200000	18986000	58686000	34076000	24610000	119150000	45646000	73502000	82912000	43778000	39133000	12394	1576	11748	76005;76006;76007;76008;76009;76010;76011	102722;102723;102724;102725	102722			4	
ELFQTPICTDKPTTHEK	2	Unmodified	2043.9935	0.993541	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		42.882	42.882	3	3.4275E-05	37843	160511_QHF_FH_JSI11i_3	76.151	55.762			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12395	1576	11749	76012;76013	102726;102727	102727			2	
ELFSAPGHTEESMTIDK	1	Unmodified	1890.8669	0.8669435	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	53.528	52.757	3	4.4779E-07	45120	160511_QHF_FH_JSI12i_2	121.03	97.468			0.96103	1.0293	40.337	6	4	Median	0.68816	0.59896	NaN	1	1	Median	0.66094	0.80661	NaN	1	0	Median	1.525	1.5386	35.004	2	2	Median	0.96103	1.0293	12.374	2	1	Median	438490000	211530000	226960000	56776000	37442000	19333000	54197000	30582000	23615000	224940000	93683000	131260000	102570000	49820000	52754000	12396	1576	11750	76014;76015;76016;76017;76018;76019	102728;102729;102730;102731;102732;102733;102734;102735;102736	102729			9	
ELFSEKHASLQNSQR	1	Acetyl (K)	1814.8911	0.89112484	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		47.297	38.127	3	8.4607E-08	21136	160513_QHF_FH_JSI10Kac_6	116.43	73.642			0.7923	0.85687	65.17	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1357	1.3585	NaN	1	0	Median	0.55273	0.54048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32403000	17322000	15081000	1752600	0	1752600	9578800	3801000	5777800	21072000	13521000	7550300	0	0	0	12397	3736	11751	76020;76021;76022	102737;102738;102739;102740;102741;102742	102742	2923		6	
ELFSFFR	0	Unmodified	944.4756	0.47560295	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.191	82.507	2	0.0042825	69242	160511_QHF_FH_JSI10i_3	99.139	58.287			0.95874	0.93722	11.259	4	0	Median	1.3893	1.1352	NaN	1	0	Median	0.77437	0.89081	NaN	1	0	Median	1.0489	0.97831	NaN	1	0	Median	0.87636	0.89787	NaN	1	0	Median	222370000	113410000	108960000	37634000	14095000	23539000	51216000	32390000	18826000	67137000	29525000	37612000	66381000	37396000	28985000	12398	3849	11752	76023;76024;76025;76026	102743;102744;102745;102746;102747;102748;102749	102745			7	
ELFSNLQEFAGPSGK	1	Unmodified	1622.794	0.79403656	4785	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.03		6	2					1		2	2	3	2	76.756	75.007	2	8.6313E-30	66514	160511_QHF_FH_JSI11i_2	189.3	130.23			1.0088	1.0178	23.815	9	6	Median	1.0616	0.89257	13.032	2	2	Median	0.81263	0.99836	17.18	2	2	Median	1.0186	1.0178	25.54	3	1	Median	1.3045	1.3644	28.856	2	1	Median	714270000	322930000	391340000	139860000	62222000	77642000	172960000	89772000	83185000	200940000	90561000	110370000	200510000	80372000	120140000	12399	4785	11753	76027;76028;76029;76030;76031;76032;76033;76034;76035	102750;102751;102752;102753;102754;102755;102756;102757;102758;102759;102760;102761;102762;102763;102764;102765;102766;102767;102768;102769	102763			20	
ELFSPLHALNFGIGGDTTR	0	Unmodified	2044.0378	0.037789075	2077	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							4	2	3	3	97.616	97.459	2;3	7.0676E-68	86481	160511_QHF_FH_JSI11i_3	199.16	170.94			1.0292	1.0477	20.692	11	1	Median	1.4155	1.219	18.745	3	1	Plateau	0.91092	1.0995	2.7648	2	0	Median	1.0292	0.95132	1.8129	3	0	Plateau	0.94783	0.96412	5.6159	3	0	Median	1418800000	745580000	673270000	80732000	40699000	40032000	153710000	92124000	61583000	482980000	263820000	219160000	701430000	348930000	352500000	12400	2077	11754	76036;76037;76038;76039;76040;76041;76042;76043;76044;76045;76046;76047	102770;102771;102772;102773;102774;102775;102776;102777;102778;102779;102780;102781;102782;102783;102784;102785;102786;102787;102788;102789;102790;102791;102792;102793;102794	102771			25	
ELFSQFGK	1	Unmodified	954.48108	0.48108226	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.64	2	3	2					3	2	2	2	4	4	54.675	50.066	2	6.8515E-05	43317	160511_QHF_FH_JSI11i_2	144.83	114.12			1.0616	1.0657	12.012	12	0	Median	1.0547	0.89795	18.383	2	0	Median	0.89698	1.0495	23.638	2	0	Median	1.0912	1.0657	3.2434	4	0	Median	1.0445	1.1152	5.4085	4	0	Median	1883600000	889740000	993900000	324160000	129240000	194920000	88620000	38933000	49687000	765770000	333940000	431840000	705080000	387620000	317460000	12401	2385	11755	76048;76049;76050;76051;76052;76053;76054;76055;76056;76057;76058;76059	102795;102796;102797;102798;102799;102800;102801;102802	102798			8	
ELFVHGLPGSGK	1	Unmodified	1239.6612	0.66117189	2279	Q08AF3;Q68D06	SLFN5;SLFN13	Schlafen family member 5;Schlafen family member 13	no	no	0	0	0	0				By MS/MS	3	0			1										1	49.598	49.36	3	0.0047614	42278	160511_QHF_FH_JSI12i_3	49.298	40.11			2.1925	2.186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1925	2.186	NaN	1	1	Median	61384000	21587000	39798000	0	0	0	0	0	0	0	0	0	61384000	21587000	39798000	12402	2279	11756	76060	102803	102803			1	
ELFVMAR	0	Unmodified	864.45276	0.45275902	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	50.697	49.706	2	0.0033298	43531	160511_QHF_FH_JSI9i_2	105.22	89.996			1.2708	1.094	10.197	3	0	Median	1.2845	1.094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2708	1.2886	NaN	1	0	Median	0.97609	1.0686	NaN	1	0	Median	560720000	246210000	314510000	117850000	45946000	71907000	0	0	0	257940000	110060000	147880000	184920000	90204000	94717000	12403	1984	11757	76061;76062;76063	102804;102805	102805			2	
ELFVQSEIFPLETPAFAIK	1	Unmodified	2178.1613	0.16125825	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.08	102.03	2	8.0475E-26	90602	160511_QHF_FH_JSI10i_2	208.15	181.01			1.1489	1.4249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1489	1.4249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67038000	27191000	39848000	0	0	0	67038000	27191000	39848000	0	0	0	0	0	0	12404	1693	11758	76064	102806	102806			1	
ELFWHALR	0	Unmodified	1070.5661	0.56614929	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		59.099	58.337	3	0.011619	49403	160511_QHF_FH_JSI10i_3	35.295	25.879			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12405	4140	11759	76065;76066	102807;102808	102808			2	
ELGDHVTNLRK	1	Unmodified	1280.6837	0.68369824	794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			20.15	18.946	3	0.0002254	15307	160511_QHF_FH_JSI9i_3	67.385	56.775			1.4094	1.3525	12.57	2	0	Median	1.5482	1.2375	NaN	1	0	Median	1.2831	1.4782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147720000	58707000	89011000	95305000	29717000	65588000	52412000	28990000	23422000	0	0	0	0	0	0	12406	794	11760	76067;76068	102809;102810;102811	102810			3	
ELGDVLFQMAEVHR	0	Unmodified	1642.8137	0.81372614	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	87.096	86.802	3	2.4107E-05	77392	160511_QHF_FH_JSI11i_3	108.97	99.171			0.96512	0.94603	18.447	4	2	Median	1.2512	1.0609	NaN	1	1	Median	0.54267	0.69229	NaN	1	1	Median	0.98698	0.92287	NaN	1	0	Median	0.94373	0.96977	NaN	1	0	Median	121800000	62939000	58861000	9414800	4609000	4805900	12182000	8431500	3750000	49951000	25398000	24553000	50253000	24500000	25753000	12407	5478	11761	76069;76070;76071;76072;76073;76074	102812;102813;102814;102815;102816;102817;102818;102819	102813			8	
ELGDVQGHGR	0	Unmodified	1066.5156	0.51557028	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	9.7335	9.4654	2;3	0.0047568	7083	160511_QHF_FH_JSI11i_3	33.89	28.11			1.8145	1.7278	61.618	4	1	Median	2.2481	1.8772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78482	0.7464	NaN	1	0	Median	2.1831	2.3001	52.192	2	1	Median	190500000	64569000	125940000	62839000	16596000	46243000	0	0	0	26718000	16741000	9977500	100950000	31233000	69715000	12408	2911	11762	76075;76076;76077;76078	102820;102821;102822	102820			2	
ELGELIPLR	0	Unmodified	1038.6073	0.6073454	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	74.054	72.778	2	0.019084	62825	160511_QHF_FH_JSI12i_2	61.582	42.068			1.5652	1.7326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5652	1.7326	NaN	1	1	Median	77689000	29366000	48323000	0	0	0	0	0	0	0	0	0	77689000	29366000	48323000	12409	2587	11763	76079	102823	102823			1	
ELGENLDQILR	0	Unmodified	1298.683	0.68302954	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	73.28	72.594	2	5.7956E-07	63564	160511_QHF_FH_JSI11i_2	113.46	78.507			0.97335	0.98703	36.608	6	3	Median	1.1844	0.99234	NaN	1	1	Median	0.92883	1.1512	NaN	1	0	Median	0.95703	0.93595	6.7562	2	1	Median	1.3506	1.486	65.41	2	1	Median	468050000	237560000	230480000	74401000	36759000	37642000	87316000	45670000	41646000	200420000	99499000	100920000	105910000	55636000	50274000	12410	4193	11764	76080;76081;76082;76083;76084;76085	102824;102825;102826;102827;102828	102826			5	
ELGEYFLFDPK	1	Unmodified	1356.6602	0.66016884	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.274	89.569	2	7.0743E-05	78767	160511_QHF_FH_JSI11i_2	92.062	84.682			1.1199	1.1814	22.832	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3472	1.3884	NaN	1	0	Median	0.93101	1.0052	NaN	1	0	Median	66226000	30273000	35953000	0	0	0	0	0	0	34748000	13250000	21498000	31478000	17023000	14455000	12411	432	11765	76086;76087	102829;102830	102830			1	
ELGGESNFGDALLDAGESMK	1	Unmodified	2038.9154	0.91535026	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	89.176	88.867	2	2.6269E-95	80947	160511_QHF_FH_JSI11i_1	222.57	187.82			0.76218	0.77738	16.91	3	1	Median	NaN	NaN	NaN	0	0	Median	0.65392	0.77738	NaN	1	0	Median	0.76218	0.72865	NaN	1	1	Median	0.94832	1.0033	NaN	1	0	Median	98311000	51189000	47122000	0	0	0	43429000	25436000	17993000	32934000	15560000	17374000	21948000	10193000	11755000	12412	4331	11766	76088;76089;76090;76091	102831;102832;102833;102834;102835;102836;102837	102832			7	
ELGGFTEK	1	Unmodified	879.4338	0.43379771	1358	P30536	TSPO	Translocator protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								3	1	2	1	27.992	27.173	2	0.0031292	23887	160511_QHF_FH_JSI11i_1	81.296	24.015			1.8468	1.7985	71.321	7	5	Median	1.1676	1.0095	95.918	3	2	Median	2.5343	2.9579	NaN	1	1	Median	1.3362	1.3212	43.608	2	1	Median	2.2638	2.4968	NaN	1	1	Median	1800700000	767070000	1033600000	557750000	195170000	362580000	383410000	150240000	233170000	611720000	298880000	312840000	247810000	122780000	125030000	12413	1358	11767	76092;76093;76094;76095;76096;76097;76098	102838;102839;102840;102841;102842;102843;102844	102838			7	
ELGGLEGDPSPEEDEGIQK	1	Unmodified	1997.9066	0.90655971	4406	Q9BT09	CNPY3	Protein canopy homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	51.455	50.826	2;3	1.8909E-67	45695	160511_QHF_FH_JSI10i_1	235.25	227.14			1.08	1.0379	18.955	6	1	Median	1.1415	0.9307	NaN	1	0	Median	0.83518	0.99729	NaN	1	0	Median	1.4124	1.3707	8.9579	2	1	Median	0.94016	0.98983	12.342	2	0	Median	466180000	207820000	258360000	61415000	24797000	36619000	77163000	40052000	37111000	156750000	65221000	91527000	170860000	77752000	93106000	12414	4406	11768	76099;76100;76101;76102;76103;76104	102845;102846;102847;102848;102849;102850;102851;102852;102853;102854;102855;102856;102857	102853			13	
ELGGLGMLSMGHVLIPQSDLR	0	Unmodified	2222.1551	0.15514379	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.5		2	3						3	2	3	2	1	96.706	93.7	3	1.0475E-36	89884	160511_QHF_FH_JSI11i_3	189.11	161.78			1.0196	1.0241	17.221	8	1	Median	1.3312	1.1441	7.1376	2	1	Median	0.80167	0.96535	24.133	3	0	Median	1.0529	1.0212	1.7858	2	0	Median	1.0021	1.0142	NaN	1	0	Median	2015900000	1034500000	981430000	197160000	82628000	114530000	396770000	213460000	183310000	666960000	320440000	346520000	755060000	417990000	337070000	12415	3101	11769	76105;76106;76107;76108;76109;76110;76111;76112	102858;102859;102860;102861;102862;102863;102864;102865;102866;102867;102868	102858			11	
ELGHGALAEK	1	Unmodified	1023.5349	0.53490874	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							1	3	2	3	14.857	14.333	2;3	3.3155E-05	11152	160511_QHF_FH_JSI12i_3	96.143	63.788			0.84338	0.89849	47.691	7	6	Median	0.84338	0.7115	NaN	1	1	Median	0.67049	0.81766	29.307	3	3	Median	2.2893	2.2899	NaN	1	1	Median	1.1703	1.2191	5.918	2	1	Median	449050000	238160000	210880000	53331000	30326000	23005000	223840000	134150000	89688000	45532000	12208000	33324000	126350000	61481000	64865000	12416	3709	11770	76113;76114;76115;76116;76117;76118;76119;76120;76121	102869;102870;102871;102872;102873;102874;102875;102876;102877;102878	102877			10	
ELGIIPTIIRDEELK	1	Unmodified	1737.9877	0.98765098	3630	Q8NDH3	NPEPL1	Probable aminopeptidase NPEPL1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	91.506	91.267	3	0.0044813	79151	160511_QHF_FH_JSI12i_3	53.995	42.725			0.79691	0.87421	42.674	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92288	1.1821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68813	0.6465	NaN	1	1	Median	45412000	27840000	17572000	0	0	0	13223000	3284900	9938500	0	0	0	32189000	24555000	7633500	12417	3630	11771	76122;76123	102879;102880	102880			2	
ELGIQVHSVTR	0	Unmodified	1237.6779	0.67788459	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.061	34.933	2	7.1498E-05	29636	160511_QHF_FH_JSI12i_3	91.937	61.683			1.0429	1.0738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0429	1.0738	NaN	1	0	Median	23570000	9856500	13713000	0	0	0	0	0	0	0	0	0	23570000	9856500	13713000	12418	4096	11772	76124	102881	102881			1	
ELGITALHIK	1	Unmodified	1093.6495	0.64954457	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.59	1	11	8					7	9	8	11	10	7	62.184	57.431	2;3	1.1583E-14	50411	160511_QHF_FH_JSI10i_2	155.15	116.85			0.96116	1.019	16.222	32	3	Median	1.1868	0.98682	19.068	8	1	Median	0.89631	1.0635	10.939	9	1	Median	1.1247	1.059	21.8	8	1	Median	0.94339	1.0131	13.309	7	0	Median	26695000000	12107000000	14588000000	3994200000	1714100000	2280100000	5834400000	2712900000	3121500000	9425600000	4229200000	5196400000	7440400000	3450800000	3989700000	12419	1991	11773	76125;76126;76127;76128;76129;76130;76131;76132;76133;76134;76135;76136;76137;76138;76139;76140;76141;76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153;76154;76155;76156;76157;76158;76159;76160	102882;102883;102884;102885;102886;102887;102888;102889;102890;102891;102892;102893;102894;102895;102896;102897;102898;102899;102900;102901;102902;102903;102904;102905;102906;102907;102908;102909;102910;102911;102912;102913;102914;102915;102916;102917;102918;102919;102920;102921;102922;102923;102924;102925;102926;102927;102928;102929;102930;102931;102932;102933;102934;102935;102936;102937;102938;102939;102940;102941;102942;102943;102944;102945;102946;102947;102948;102949;102950	102928			69	
ELGIWEPLAVK	1	Unmodified	1253.702	0.70197407	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	3.43	4	5	4					1		3	4	4	3	86.712	85.394	2	6.2194E-30	74616	160511_QHF_FH_JSI12i_2	193.38	143.57			0.9257	0.90572	31.85	13	2	Median	1.0215	0.86046	5.2011	2	0	Median	0.74522	0.86889	55.477	4	1	Median	0.94075	0.91689	13.767	4	1	Median	0.82636	0.93233	3.9298	3	0	Plateau	3557900000	1755600000	1802300000	544120000	240750000	303370000	851760000	482180000	369580000	1224000000	620050000	603910000	938080000	412610000	525470000	12420	1655	11774	76161;76162;76163;76164;76165;76166;76167;76168;76169;76170;76171;76172;76173;76174	102951;102952;102953;102954;102955;102956;102957;102958;102959;102960;102961;102962;102963;102964;102965;102966;102967;102968;102969;102970;102971;102972;102973;102974;102975;102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986;102987;102988;102989	102959			39	
ELGLDEGVDSLK	1	Unmodified	1273.6402	0.64016167	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	60.424	59.694	2	1.3891E-05	52913	160511_QHF_FH_JSI9i_1	127.42	97.169			0.70493	0.69899	20.731	3	3	Plateau	1.1867	0.99189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70493	0.68385	NaN	1	1	Median	0.90697	0.9653	NaN	1	1	Median	784970000	451750000	333220000	207790000	106980000	100810000	0	0	0	289040000	164870000	124170000	288140000	179900000	108240000	12421	3814	11775	76175;76176;76177	102990;102991;102992	102992			3	
ELGLNPEK	1	Unmodified	898.476	0.47599688	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	28.802	28.019	2	0.00071972	25350	160511_QHF_FH_JSI12i_1	99.139	58.87			0.92704	0.94561	44.214	6	3	Median	1.1549	0.97761	27.135	2	1	Median	0.79297	0.93116	NaN	1	0	Median	1.8535	1.7999	NaN	1	1	Median	0.61733	0.67226	50.428	2	1	Median	1285600000	627290000	658300000	321640000	167350000	154290000	302730000	152430000	150300000	298160000	118890000	179270000	363050000	188620000	174430000	12422	4496	11776	76178;76179;76180;76181;76182;76183	102993;102994;102995;102996;102997;102998;102999;103000;103001;103002;103003	102997			11	
ELGLPEELVSR	0	Unmodified	1240.6663	0.66631685	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.94	4	3	1				1			2	2	2	3	71.146	69.262	2	1.3844E-13	60983	160511_QHF_FH_JSI11i_2	153.05	99.077			1.3062	1.3694	16.975	9	0	Median	1.5855	1.2745	26.297	2	0	Median	1.224	1.4809	14.607	2	0	Median	1.4177	1.3991	3.032	2	0	Median	1.4458	1.5796	23.88	3	0	Plateau	2193700000	907920000	1285800000	162800000	65021000	97778000	688130000	315650000	372470000	796100000	308520000	487570000	546700000	218720000	327980000	12423	1693	11777	76184;76185;76186;76187;76188;76189;76190;76191;76192	103004;103005;103006;103007;103008;103009;103010;103011;103012;103013;103014;103015;103016;103017;103018;103019;103020;103021	103018			18	
ELGLREENEGVYNGSWGGR	0	Unmodified	2120.9875	0.98754442	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			55.419	53.867	3	2.9415E-05	45030	160511_QHF_FH_JSI10i_3	74.364	53.425			0.76173	0.84571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76173	0.84571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20412000	13110000	7302100	0	0	0	20412000	13110000	7302100	0	0	0	0	0	0	12424	1659	11778	76193	103022	103022			1	
ELGNDAYK	1	Unmodified	908.42396	0.42396131	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.572	13.731	2	0.0045395	11591	160511_QHF_FH_JSI10i_1	75.738	36.075			1.0786	1.1314	40.637	5	5	Median	1.3393	1.0595	NaN	1	1	Median	0.97643	1.1314	NaN	1	1	Median	1.5184	1.4612	75.332	2	2	Median	1.0786	1.1475	NaN	1	1	Median	4662400000	1920000000	2742400000	1027300000	299530000	727750000	1330400000	583120000	747320000	1076000000	527950000	548090000	1228600000	509370000	719260000	12425	1386	11779	76194;76195;76196;76197;76198	103023;103024;103025;103026;103027	103026			5	
ELGPDGEEAEGPGAGDGPPR	0	Unmodified	1905.8341	0.83406347	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	35.919	35.371	2	1.0102E-32	32026	160511_QHF_FH_JSI12i_1	148.52	119.45			1.5479	1.6019	21.607	4	4	Median	2.1271	1.7759	NaN	1	1	Median	1.1202	1.2813	17.001	2	2	Median	1.8756	1.8002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	124110000	53516000	70593000	23652000	7456600	16196000	60121000	29651000	30469000	40337000	16409000	23928000	0	0	0	12426	1142	11780	76199;76200;76201;76202;76203	103028;103029;103030;103031;103032	103029			5	
ELGPLPDDDDMASPK	1	Unmodified	1598.7134	0.71340297	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	57.391	56.864	2	2.085E-11	51716	160511_QHF_FH_JSI12i_1	104.24	70.358			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12427	3318	11781	76204;76205	103033;103034	103033			2	
ELGPYSSK	1	Unmodified	879.4338	0.43379771	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	4										2	1	1	17.528	17.255	2	0.0076141	14627	160511_QHF_FH_JSI10i_1	58.981	22.585			0.80507	0.88737	19.174	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80507	0.94819	18.234	2	0	Median	0.96356	0.94474	NaN	1	0	Median	0.64941	0.68735	NaN	1	0	Median	842600000	499080000	343520000	0	0	0	345180000	216120000	129060000	247980000	141930000	106050000	249440000	141030000	108410000	12428	1122	11782	76206;76207;76208;76209	103035;103036	103036			2	
ELGPYTLDR	0	Unmodified	1062.5346	0.53457439	3812	Q8WXI7	MUC16	Mucin-16	yes	no	0	0	0	0	By matching		By MS/MS	By MS/MS	1.75	0.433	1	3								1		1	2	44.465	43.49	2	0.0035082	37249	160511_QHF_FH_JSI11i_2	60.019	38.491			0.97295	0.87945	14.88	3	0	Median	0.97295	0.87945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97791	0.97903	NaN	1	0	Median	0.66933	0.72962	NaN	1	0	Median	249130000	130190000	118940000	47629000	20158000	27470000	0	0	0	121010000	65798000	55208000	80495000	44230000	36265000	12429	3812	11783	76210;76211;76212;76213	103037;103038;103039	103038			3	
ELGQGSFGMVYEGVAK	1	Unmodified	1670.7974	0.79740737	890	P08069	IGF1R	Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	71.67	70.377	2	1.9583E-05	61674	160511_QHF_FH_JSI11i_2	85.536	51.665			1.2989	1.4374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2989	1.4374	NaN	1	1	Median	11928000	3967500	7960800	0	0	0	0	0	0	0	0	0	11928000	3967500	7960800	12430	890	11784	76214;76215	103040;103041	103041			2	
ELGSLPLPLSTSEQR	0	Unmodified	1625.8625	0.86245047	3384	Q86Y82	STX12	Syntaxin-12	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			78.277	78.114	2	0.00070922	70836	160511_QHF_FH_JSI10i_1	68.44	60.37			0.96818	1.1011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96818	1.1011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24486000	13332000	11154000	0	0	0	24486000	13332000	11154000	0	0	0	0	0	0	12431	3384	11785	76216	103042	103042			1	
ELGSLPQEAFEK	1	Unmodified	1346.6718	0.67179615	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	60.265	59.611	2	0.00066222	54196	160511_QHF_FH_JSI12i_1	81.09	62.922			0.58736	0.60597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58736	0.60597	NaN	1	1	Median	51686000	33808000	17879000	0	0	0	0	0	0	0	0	0	51686000	33808000	17879000	12432	5479	11786	76217;76218;76219	103043;103044;103045	103044			3	
ELGSSTNALR	0	Unmodified	1046.5356	0.53563702	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	21.339	20.665	2	1.2725E-05	16931	160511_QHF_FH_JSI11i_2	102.55	52.585			0.91654	0.94993	32.172	8	4	Median	1.015	0.86119	25.504	2	1	Median	0.51851	0.62832	52.838	2	1	Median	1.1383	1.1214	14.503	2	1	Median	0.90132	0.94874	5.7919	2	1	Median	1504400000	808730000	695660000	335050000	171520000	163530000	359450000	220620000	138830000	406280000	204440000	201840000	403610000	212150000	191470000	12433	906	11787	76220;76221;76222;76223;76224;76225;76226;76227	103046;103047;103048;103049;103050;103051;103052;103053;103054;103055;103056	103054			11	
ELGSSVALYSR	0	Unmodified	1180.6088	0.60880197	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.37	3	4	3				2	4	1	4	5	4	4	47.756	42.96	2	2.0024E-20	22803	160513_QHF_FH_JSI9Kac_5	172.88	134.79			1.045	1.0394	11.96	17	0	Median	1.3267	1.1271	20.46	4	0	Median	0.86313	1.0249	2.5426	5	0	Median	1.1085	1.1136	5.8949	4	0	Median	1.0321	1.1273	14.735	4	0	Median	2610200000	1301600000	1308600000	464950000	192200000	272760000	678230000	350950000	327280000	785590000	407110000	378470000	681460000	351370000	330100000	12434	2328	11788	76228;76229;76230;76231;76232;76233;76234;76235;76236;76237;76238;76239;76240;76241;76242;76243;76244	103057;103058;103059;103060;103061;103062;103063;103064;103065;103066;103067;103068;103069;103070;103071;103072;103073;103074;103075;103076;103077;103078	103060			22	
ELGTVMR	0	Unmodified	804.41637	0.41637351	958	P0DP25;P0DP24;P0DP23;P27482;P02585	CALML3;TNNC2	Calmodulin-like protein 3;Troponin C, skeletal muscle	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.11	2	6	3				3	4		4	4	4	6	26.8	22.728	2	9.2945E-12	14281	160513_QHF_FH_JSI11Kac_4	157.86	95.866			0.95643	0.9667	78.187	18	3	Median	2.3079	1.9269	108.11	4	1	Median	0.79048	0.94698	30.723	4	0	Median	1.04	1.0294	75.874	4	1	Median	0.917	0.97728	86.775	6	1	Median	17170000000	7882000000	9288500000	3697100000	1269500000	2427600000	3468000000	1804400000	1663700000	4152600000	2374500000	1778200000	5852600000	2433600000	3419100000	12435	958	11789	76245;76246;76247;76248;76249;76250;76251;76252;76253;76254;76255;76256;76257;76258;76259;76260;76261;76262	103079;103080;103081;103082;103083;103084;103085;103086;103087;103088;103089;103090;103091;103092;103093;103094;103095;103096	103086			18	
ELGTVMR	0	Oxidation (M)	820.41129	0.41128813	958	P0DP25;P0DP24;P0DP23;P27482;P02585	CALML3;TNNC2	Calmodulin-like protein 3;Troponin C, skeletal muscle	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	6.04	1	3				2	2	2		1	4	3	2	19.92	14.608	2	0.010516	19902	160511_QHF_FH_JSI9i_2	89.123	64.124			1.0644	1.0971	29.826	10	0	Median	1.3826	1.162	NaN	1	0	Median	0.83069	0.99236	48.445	4	0	Median	1.3773	1.3668	16.979	3	0	Median	0.99837	1.0956	12.886	2	0	Median	2283900000	970470000	1313400000	552280000	224670000	327610000	781790000	363810000	417980000	912650000	363330000	549320000	37150000	18657000	18492000	12436	958	11789	76263;76264;76265;76266;76267;76268;76269;76270;76271;76272	103097;103098;103099;103100;103101	103098		532	5	
ELGVSTNANYK	1	Unmodified	1194.5881	0.58806652	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	7.5	6.5	2						2				1	1	2	31.56	28.117	2	0.0010804	25258	160511_QHF_FH_JSI12i_1	79.148	64.373			0.94843	1.1248	16.458	3	1	Median	NaN	NaN	NaN	0	0	Median	0.94843	1.1248	NaN	1	0	Median	0.91794	0.90691	NaN	1	1	Median	1.2111	1.253	NaN	1	0	Median	189260000	85543000	103720000	0	0	0	111760000	58666000	53090000	4376600	2174900	2201700	73130000	24703000	48427000	12437	3791	11790	76273;76274;76275;76276	103102;103103;103104	103102			3	
ELGYTVK	1	Unmodified	808.43307	0.43306943	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	24.722	24.249	2	0.013927	21704	160511_QHF_FH_JSI12i_1	67.032	24.032			1.0769	0.93067	33.447	5	0	Linear	0.62998	0.52687	NaN	1	0	Median	1.0147	1.179	NaN	1	0	Median	0.99207	0.99581	9.5682	2	0	Median	0.65123	0.6748	NaN	1	0	Median	447890000	243600000	204290000	64233000	36883000	27350000	104160000	58747000	45416000	205000000	103660000	101350000	74487000	44311000	30175000	12438	1357	11791	76277;76278;76279;76280;76281	103105;103106	103105			2	
ELHAPLTVVADGLFSK	1	Unmodified	1695.9196	0.91957142	2541	Q14534	SQLE	Squalene monooxygenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	90.884	90.707	3	1.5833E-05	78651	160511_QHF_FH_JSI12i_3	80.632	68.005			0.7351	0.74614	61.755	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.18038	0.21936	NaN	1	1	Median	0.4993	0.46627	NaN	1	1	Median	0.7351	0.74614	NaN	1	0	Median	97267000	59373000	37894000	0	0	0	14756000	13696000	1059800	31364000	18131000	13233000	51147000	27546000	23601000	12439	2541	11792	76282;76283;76284;76285	103107;103108;103109;103110	103109			3	
ELHDAMK	1	Unmodified	842.39564	0.39563807	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0			By MS/MS		2	0		1										1		8.4345	8.2374	2	0.049097	5881	160511_QHF_FH_JSI11i_2	47.849	28.145			2.0405	2.046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0405	2.046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33867000	14717000	19149000	0	0	0	0	0	0	33867000	14717000	19149000	0	0	0	12440	2986	11793	76286	103111	103111			1	
ELHENVLDK	1	Unmodified	1095.556	0.55603811	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		8									1	4	3	24.552	23.75	2;3	0.0005333	19755	160511_QHF_FH_JSI11i_2	89.08	70.855			0.89619	1.017	99.697	6	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45849	0.47364	153.81	3	2	Median	1.1241	1.2651	33.038	3	2	Median	579020000	251620000	327390000	0	0	0	0	0	0	358000000	146580000	211420000	221020000	105050000	115970000	12441	366	11794	76287;76288;76289;76290;76291;76292;76293;76294	103112;103113;103114;103115;103116;103117;103118;103119;103120	103117			9	
ELHINLIPNK	1	Unmodified	1189.6819	0.68190733	880	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.6	3	9	8					12	8	11	11	8	10	62.477	57.8	2;3	1.4898E-15	49325	160511_QHF_FH_JSI12i_3	169.12	124.04			0.97125	0.97786	25.646	35	3	Median	0.93734	0.78521	24.931	9	0	Median	0.88791	1.0399	12.96	9	2	Median	1.0665	1.0291	16.192	8	0	Median	1.009	1.0222	37.956	9	1	Median	43697000000	20199000000	23499000000	4734800000	2160300000	2574500000	6106600000	3284900000	2821700000	17033000000	7581600000	9451400000	15823000000	7172000000	8650900000	12442	880	11795	76295;76296;76297;76298;76299;76300;76301;76302;76303;76304;76305;76306;76307;76308;76309;76310;76311;76312;76313;76314;76315;76316;76317;76318;76319;76320;76321;76322;76323;76324;76325;76326;76327;76328;76329;76330;76331;76332;76333;76334	103121;103122;103123;103124;103125;103126;103127;103128;103129;103130;103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143;103144;103145;103146;103147;103148;103149;103150;103151;103152;103153;103154;103155;103156;103157;103158;103159;103160;103161;103162;103163;103164;103165;103166;103167;103168;103169;103170;103171;103172;103173;103174;103175;103176;103177;103178;103179;103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190;103191;103192;103193;103194;103195;103196;103197;103198;103199;103200;103201;103202;103203;103204;103205;103206;103207;103208;103209;103210;103211;103212;103213;103214;103215;103216;103217;103218;103219;103220;103221;103222;103223	103215			103	
ELHINLIPNKQDR	1	Unmodified	1588.8685	0.8685389	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.956	49.358	3	0.020091	40510	160511_QHF_FH_JSI9i_3	42.52	35.15			0.72429	0.58824	NaN	1	1	Median	0.72429	0.58824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47634000	24545000	23089000	47634000	24545000	23089000	0	0	0	0	0	0	0	0	0	12443	880	11796	76335	103224	103224			1	
ELHIQGNR	0	Unmodified	965.50428	0.50427732	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		10.921	10.921	3	0.014963	8514	160511_QHF_FH_JSI11i_3	40.268	26.061			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12444	2668	11797	76336	103225	103225			1	
ELHKESK	2	Acetyl (K)	911.47125	0.47124585	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4			3	2	2	7.8026	-1.5095	2;3	0.048919	2706	160513_QHF_FH_JSI11Kac_5	60.59	33.988			0.86626	0.9481	24.477	7	0	Median	NaN	NaN	NaN	0	0	Median	0.79388	0.9298	11.382	3	0	Median	1.2522	1.2443	44.853	2	0	Median	0.93264	1.0246	10.978	2	0	Median	99707000	55810000	43897000	0	0	0	49394000	29147000	20247000	20242000	12477000	7765000	30071000	14186000	15885000	12445	2094	11798	76337;76338;76339;76340;76341;76342;76343	103226;103227;103228	103228			1	
ELHLSFTQGFWR	0	Unmodified	1519.7572	0.75719754	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									4	1	2		1	82.22	74.907	2;3	5.7924E-13	41939	160513_QHF_FH_JSI10Kac_6	103.91	98.189			0.85883	0.71197	20.321	4	0	Linear	1.1817	1.0185	NaN	1	0	Median	0.65347	0.7762	20.847	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96674	1.0421	NaN	1	0	Median	265280000	169620000	95657000	38718000	17209000	21509000	211000000	142620000	68387000	0	0	0	15561000	9799800	5761500	12446	3943	11799	76344;76345;76346;76347	103229;103230;103231	103230			3	
ELHQLQNEK	1	Unmodified	1137.5778	0.57783619	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		16.181	6.7461	3	0.033307	6470	160513_QHF_FH_JSI11Kac_5	31.286	24.007			0.54515	0.51408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54515	0.51408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1464700	892230	572510	0	0	0	0	0	0	1464700	892230	572510	0	0	0	12447	4673	11800	76348	103232	103232			1	
ELHQLQNLFSK	1	Unmodified	1355.7197	0.7197494	3737	Q8TEQ8	PIGO	GPI ethanolamine phosphate transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	60.423	59.62	2;3	8.8832E-05	51755	160511_QHF_FH_JSI12i_3	94.363	58.852			0.77313	0.78909	37.692	4	1	Median	1.0415	0.87237	NaN	1	0	Median	0.4697	0.59217	26.412	2	1	Median	1.2101	1.2091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231950000	115870000	116080000	73958000	34685000	39273000	101320000	53463000	47861000	56666000	27722000	28944000	0	0	0	12448	3737	11801	76349;76350;76351;76352;76353	103233;103234;103235	103235			3	
ELHSWEPEPDVR	0	Unmodified	1492.6947	0.69465686	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			42.329	41.363	2	0.0018645	36453	160511_QHF_FH_JSI10i_2	61.353	43.917			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12449	4428	11802	76354	103236	103236			1	
ELHVGENQIEMLEAEHLK	1	Unmodified	2118.0416	0.041553824	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		67.576	67.167	4	0.03291	59825	160511_QHF_FH_JSI10i_2	29.582	26.142			0.92884	0.9918	4.252	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78592	0.96243	NaN	1	0	Median	1.0978	1.0221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162400000	93429000	68968000	0	0	0	76734000	48324000	28410000	85663000	45105000	40558000	0	0	0	12450	4803	11803	76355;76356	103237;103238	103238			0	
ELHVYGSVVPVSSRDPTK	1	Unmodified	1969.0269	0.026890038	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			48.856	47.288	4	0.0050135	39488	160511_QHF_FH_JSI10i_3	46.543	40.126			0.1064	0.12464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1064	0.12464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218740000	192330000	26412000	0	0	0	218740000	192330000	26412000	0	0	0	0	0	0	12451	4815	11804	76357	103239	103239			1	
ELIAESKK	2	Unmodified	916.52295	0.52294707	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.399	10.493	2	0.0030005	7756	160511_QHF_FH_JSI12i_3	81.296	45.416			0.76136	0.76056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76136	0.76056	NaN	1	0	Median	89621000	50110000	39511000	0	0	0	0	0	0	0	0	0	89621000	50110000	39511000	12452	3906	11805	76358	103240	103240			1	
ELIALQEDK	1	Unmodified	1057.5655	0.56554017	2590	Q14BN4	SLMAP	Sarcolemmal membrane-associated protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		43.875	43.496	2	0.011061	39315	160511_QHF_FH_JSI11i_1	49.418	21.244			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12453	2590	11806	76359	103241	103241			1	
ELICHNQFSLFLVGSGGFGGK	1	Unmodified	2266.1205	0.12047285	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	87.233	79.689	3	0.00015073	45434	160513_QHF_FH_JSI10Kac_6	104.63	86.094			1.1867	1.0142	33.478	4	4	Linear	NaN	NaN	NaN	0	0	Median	1.1782	1.3832	12.515	2	2	Median	0.78616	0.76177	NaN	1	1	Median	0.76829	0.81242	NaN	1	1	Median	261710000	127930000	133780000	0	0	0	140210000	66544000	73665000	68089000	33312000	34776000	53409000	28074000	25336000	12454	1747	11807	76360;76361;76362;76363	103242;103243;103244;103245	103245			4	
ELIDHSPK	1	Unmodified	937.4869	0.48689592	354	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	5.25	2	9	1					3		4	3	5	3	14.62	12.289	2;3	0.00011023	10162	160511_QHF_FH_JSI12i_2	96.668	56.667			0.94123	0.98173	30.104	15	3	Median	1.0799	0.90558	31.928	4	1	Median	0.86635	1.0638	7.1294	3	0	Median	0.92384	0.87812	15.414	5	0	Median	0.94123	1.0507	59.963	3	2	Median	1304800000	671300000	633530000	249200000	121380000	127820000	276330000	137030000	139290000	468030000	230450000	237580000	311280000	182440000	128840000	12455	354	11808	76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378	103246;103247;103248;103249;103250;103251;103252;103253;103254;103255;103256;103257;103258;103259;103260;103261;103262;103263	103246			18	
ELIEIISGAAALD	0	Unmodified	1313.7078	0.70784731	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.22	101.12	2	1.2167E-05	91780	160511_QHF_FH_JSI11i_1	123.86	116.49			0.76391	0.77787	26.797	4	1	Median	1.2733	1.0652	NaN	1	0	Median	0.47131	0.55632	NaN	1	1	Median	0.8285	0.81513	NaN	1	0	Median	0.70435	0.74231	NaN	1	0	Median	842920000	455130000	387790000	146040000	69300000	76736000	257560000	154170000	103390000	235490000	131410000	104080000	203830000	100240000	103580000	12456	1454	11809	76379;76380;76381;76382	103264;103265;103266;103267;103268;103269;103270	103264			7	
ELIEQLR	0	Unmodified	899.50763	0.50763136	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	1	2	3	40.227	38.273	2	0.0084038	34215	160511_QHF_FH_JSI10i_1	83.614	10.575			1.0599	1.0684	58.575	8	2	Median	2.7182	2.27	106.11	2	0	Median	0.76756	0.89068	NaN	1	0	Median	1.0599	1.0596	0.71587	2	1	Median	1.0062	1.1192	31.483	3	1	Median	2957800000	1461900000	1495900000	602250000	219730000	382520000	332180000	201610000	130570000	1161500000	597170000	564310000	861840000	443360000	418480000	12457	1386	11810	76383;76384;76385;76386;76387;76388;76389;76390	103271;103272;103273;103274;103275;103276;103277;103278;103279;103280;103281	103275			11	
ELIEQTK	1	Unmodified	859.4651	0.46509784	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.141	14.869	2	0.020186	12289	160511_QHF_FH_JSI11i_1	57.177	7.819			0.89633	0.86888	41.736	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.6224	1.871	NaN	1	1	Median	0.89633	0.86888	NaN	1	0	Median	0.90695	0.95866	NaN	1	0	Median	977360000	502770000	474580000	0	0	0	314930000	145650000	169280000	368160000	196630000	171530000	294260000	160490000	133770000	12458	1787	11811	76391;76392;76393	103282;103283;103284	103282			3	
ELIFEETAR	0	Unmodified	1106.5608	0.56078914	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	6	5.66		2					1			1			2	54.734	50.363	2	0.00015459	43228	160511_QHF_FH_JSI12i_2	88.948	26.949			2.0861	2.2266	32.453	3	1	Median	3.0992	2.6135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6187	1.7651	32.854	2	0	Median	219900000	93973000	125930000	72345000	19266000	53078000	0	0	0	0	0	0	147560000	74707000	72850000	12459	1309	11812	76394;76395;76396	103285;103286;103287;103288	103286			3	
ELIGKHAIPNLVK	2	Acetyl (K)	1472.8715	0.87149902	442	O60716	CTNND1	Catenin delta-1	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		72.885	64.46	3	0.0058713	34913	160513_QHF_FH_JSI11Kac_6	45.434	24.771			0.45854	0.4834	78.284	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70555	0.84083	NaN	1	0	Median	0.298	0.27791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62159000	46348000	15811000	0	0	0	8366700	4425000	3941700	53792000	41923000	11869000	0	0	0	12460	442	11813	76397;76398	103289	103289	226		1	
ELIHLLPIK	1	Unmodified	1074.6801	0.68011642	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	72.291	71.529	3	0.00054177	62318	160511_QHF_FH_JSI12i_2	65.305	41.15			0.83166	0.90853	17.786	5	0	Median	1.3817	1.2063	NaN	1	0	Median	0.74281	0.90853	NaN	1	0	Median	0.83166	0.82501	NaN	1	0	Median	0.94976	1.0337	20.781	2	0	Median	216070000	105450000	110610000	31471000	16253000	15218000	44571000	21873000	22698000	44679000	21884000	22794000	95345000	45442000	49904000	12461	3748	11814	76399;76400;76401;76402;76403	103290;103291;103292;103293;103294;103295	103292			5	
ELIIGDR	0	Unmodified	814.45487	0.45486751	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.98	4	4	2				3	2		4	4	4	3	36.858	32.901	2	6.3093E-09	19137	160513_QHF_FH_JSI12Kac_4	146.94	32.922			1.0942	0.98744	13.921	15	2	Median	1.2386	1.0075	5.3195	4	0	Median	0.79958	0.96249	15.379	4	1	Median	0.97369	0.95672	15.109	4	1	Median	1.0942	1.2004	20.781	3	0	Median	7978800000	3939100000	4039700000	1438600000	593810000	844790000	2217100000	1193700000	1023400000	2548300000	1207600000	1340800000	1774800000	944030000	830740000	12462	1263	11815	76404;76405;76406;76407;76408;76409;76410;76411;76412;76413;76414;76415;76416;76417;76418	103296;103297;103298;103299;103300;103301;103302;103303;103304;103305;103306;103307;103308;103309;103310;103311;103312;103313;103314;103315;103316;103317;103318;103319;103320;103321;103322	103319			27	
ELIINEILVMK	1	Unmodified	1313.7629	0.76285977	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	101.21	101.1	2	9.2248E-05	88824	160511_QHF_FH_JSI11i_2	88.496	37.889			0.8381	0.82194	43.205	4	0	Median	0.8914	0.75959	NaN	1	0	Median	0.69886	0.85349	NaN	1	0	Median	0.78799	0.79156	NaN	1	0	Median	1.7144	1.8895	NaN	1	0	Median	277390000	128320000	149070000	60186000	30067000	30120000	39579000	21162000	18417000	118640000	58497000	60139000	58987000	18592000	40395000	12463	2366	11816	76419;76420;76421;76422	103323	103323			1	
ELIKPPTILR	1	Unmodified	1178.7387	0.73869393	5535;1808	P53677;Q9Y2T2	AP3M2;AP3M1	AP-3 complex subunit mu-2;AP-3 complex subunit mu-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		57.903	56.91	3	0.00055917	47613	160511_QHF_FH_JSI10i_3	54.486	43.322			0.98806	0.97161	6.5193	5	1	Median	1.2207	1.0092	7.2148	2	0	Median	0.84703	1.0159	6.2985	2	1	Median	0.98806	0.91743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	393340000	200360000	192980000	145270000	64813000	80452000	132230000	76012000	56220000	115850000	59533000	56312000	0	0	0	12464	1808;5535	11817	76423;76424;76425;76426;76427	103324;103325;103326;103327;103328;103329;103330;103331;103332;103333;103334	103326			11	
ELILFSNSDNER	0	Unmodified	1435.6943	0.69432251	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.94	6.45	3	4	2				2	6		3	6	3	5	66.063	61.753	2	3.7482E-05	32992	160513_QHF_FH_JSI11Kac_5	94.297	67.182			1.0085	0.99415	23.875	11	2	Median	1.074	0.91117	0.71228	2	0	Median	0.81474	0.99415	24.168	3	1	Median	1.1341	1.1224	21.634	2	0	Median	1.1798	1.2703	22.741	4	1	Median	486070000	250680000	235380000	82421000	37357000	45064000	151900000	91566000	60335000	62103000	27735000	34368000	189640000	94026000	95618000	12465	999;2197	11818	76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438;76439;76440;76441;76442;76443;76444	103335;103336;103337;103338;103339;103340;103341;103342;103343;103344;103345;103346;103347;103348;103349;103350;103351;103352;103353	103347			19	
ELIPNIPFQMLLR	0	Unmodified	1582.8905	0.8905199	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	102.18	102.08	2	5.407E-06	89983	160511_QHF_FH_JSI9i_2	125.97	92.103			0.87385	1.0717	19.385	3	1	Median	1.3874	1.1855	NaN	1	0	Median	0.87385	1.0717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7419	0.81509	NaN	1	1	Median	592880000	295010000	297860000	194450000	78604000	115850000	204450000	108630000	95819000	0	0	0	193970000	107770000	86195000	12466	1002	11819	76445;76446;76447	103354;103355;103356;103357	103355			4	
ELIQEYGAQSGGLEK	1	Unmodified	1620.7995	0.79951586	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	48.099	47.436	2	6.4475E-12	43094	160511_QHF_FH_JSI12i_1	112.51	70.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12467	1898	11820	76448	103358	103358			1	
ELIQGGEYFSDEQMR	0	Unmodified	1800.7989	0.79886394	4068	Q96F63	CCDC97	Coiled-coil domain-containing protein 97	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			61.831	61.442	2	0.00019756	55545	160511_QHF_FH_JSI10i_1	105.17	81.944			1.4862	1.7195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4862	1.7195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29248000	16398000	12850000	0	0	0	29248000	16398000	12850000	0	0	0	0	0	0	12468	4068	11821	76449	103359	103359			1	
ELIQKELTIGSK	2	Acetyl (K)	1399.7922	0.79224564	852	P06703	S100A6	Protein S100-A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	73.307	63.145	2	9.1702E-06	33396	160513_QHF_FH_JSI10Kac_4	103.34	57.184			0.80337	0.95103	27.692	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95974	1.139	25.51	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75015	0.79156	NaN	1	0	Median	10563000	6865700	3697700	0	0	0	5653600	3241600	2412100	1885600	1885600	0	3024200	1738500	1285700	12469	852	11822	76450;76451;76452;76453	103360;103361;103362;103363;103364;103365	103360	513		6	
ELIRDEGVTSLYK	1	Unmodified	1521.8039	0.80387296	374	O43772	SLC25A20	Mitochondrial carnitine/acylcarnitine carrier protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.542	51.307	3	0.0049662	43945	160511_QHF_FH_JSI12i_3	52.5	31.547			1.4457	1.4703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4457	1.4703	NaN	1	1	Median	33843000	13022000	20822000	0	0	0	0	0	0	0	0	0	33843000	13022000	20822000	12470	374	11823	76454	103366	103366			1	
ELIREVEMGPFK	1	Unmodified	1446.7541	0.754086	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		64.585	63.837	3	0.0086118	56786	160511_QHF_FH_JSI11i_3	34.685	13.828			1.5957	1.681	34.813	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8288	2.1502	NaN	1	0	Median	1.3922	1.3142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110600000	43082000	67516000	0	0	0	25926000	8920600	17005000	84672000	34161000	50510000	0	0	0	12471	3343	11824	76455;76456	103367	103367			1	
ELISFLSEPEILVK	1	Unmodified	1615.9073	0.9072754	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	101.55	101.45	2	2.5503E-06	90002	160511_QHF_FH_JSI10i_2	153.95	91.644			0.90258	0.9805	10.036	3	1	Median	1.1495	0.9805	NaN	1	1	Median	0.70383	0.84386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90258	1.0209	NaN	1	0	Median	530160000	269590000	260580000	118130000	44311000	73819000	151610000	86243000	65371000	0	0	0	260420000	139040000	121390000	12472	24	11825	76457;76458;76459	103368;103369;103370	103370			3	
ELISLLHLSLLHLEEDK	1	Unmodified	2001.1146	0.11464241	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			91.79	86.07	3;4	2.7758E-25	49171	160513_QHF_FH_JSI10Kac_6	160.43	142.85			0.35687	0.42331	9.9405	2	1	Median	NaN	NaN	NaN	0	0	Median	0.35687	0.42331	9.9405	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162580000	121020000	41556000	0	0	0	162580000	121020000	41556000	0	0	0	0	0	0	12473	4215	11826	76460;76461	103371;103372;103373	103372			3	
ELISNASDALDK	1	Unmodified	1274.6354	0.63541065	898;1057	P14625;P08238	HSP90B1;HSP90AB1	Endoplasmin;Heat shock protein HSP 90-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.84	9	4	5		3	4	2	2	1	6	9	6	9	47.555	43.035	1;2	1.3871E-108	6733	160513_QHF_FH_JSI9Kac_3	265.61	203.65			0.99057	0.99395	61.908	29	12	Median	1.2335	1.0787	97.492	6	3	Median	0.7623	0.92878	46.2	8	4	Median	0.98874	0.96021	53.369	6	2	Median	1.0454	1.1198	53.535	9	3	Median	93600000000	47833000000	45767000000	18080000000	9987500000	8092700000	26508000000	14149000000	12359000000	26574000000	13080000000	13495000000	22437000000	10616000000	11821000000	12474	1057;898	11827	76462;76463;76464;76465;76466;76467;76468;76469;76470;76471;76472;76473;76474;76475;76476;76477;76478;76479;76480;76481;76482;76483;76484;76485;76486;76487;76488;76489;76490;76491	103374;103375;103376;103377;103378;103379;103380;103381;103382;103383;103384;103385;103386;103387;103388;103389;103390;103391;103392;103393;103394;103395;103396;103397;103398;103399;103400;103401;103402;103403;103404;103405;103406;103407;103408;103409;103410;103411;103412;103413;103414;103415;103416;103417;103418;103419;103420;103421;103422;103423;103424;103425;103426;103427	103404			54	
ELISNASDALDKIR	1	Unmodified	1543.8206	0.82058566	898;1057	P14625;P08238	HSP90B1;HSP90AB1	Endoplasmin;Heat shock protein HSP 90-beta	no	no	0	0	0	1		By MS/MS			2	0		1									1			60.765	59.898	2	0.0066753	53042	160511_QHF_FH_JSI10i_2	99.522	38.169			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7629600	7629600	0	0	0	0	7629600	7629600	0	0	0	0	0	0	0	12475	1057;898	11828	76492	103428	103428			1	
ELISNASDALEK	1	Unmodified	1288.6511	0.65106071	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.93	4		1			3	1			1	3	2	3	50.378	45.603	2	6.5893E-23	40969	160511_QHF_FH_JSI10i_1	177.44	122.07			0.97624	1.0075	17.281	9	2	Median	1.2495	1.0075	NaN	1	0	Median	0.79061	0.92636	18.781	3	1	Median	1.0331	1.0152	8.0981	2	0	Median	0.96049	1.0248	27.718	3	1	Median	5730800000	3180900000	2550000000	1306900000	623600000	683250000	1447500000	867410000	580080000	1597700000	863620000	734120000	1378700000	826220000	552520000	12476	2328	11829	76493;76494;76495;76496;76497;76498;76499;76500;76501	103429;103430;103431;103432;103433;103434;103435;103436;103437;103438;103439;103440;103441;103442;103443	103435			15	
ELISNSSDALDK	1	Unmodified	1290.6303	0.63032527	880	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.58	4	4	3		3	3	3			3	7	5	5	40.953	36.245	2	5.5806E-93	32090	160511_QHF_FH_JSI10i_2	255.7	185.88			1.0188	1.1015	24.391	19	2	Median	1.0527	0.85302	17.312	3	0	Median	0.95213	1.1371	37.035	7	2	Median	1.0968	1.0859	12.698	4	0	Median	1.0423	1.1199	5.5072	5	0	Median	30750000000	13810000000	16940000000	7060900000	2631700000	4429200000	7953500000	4071000000	3882400000	8620600000	3961700000	4659000000	7115400000	3145700000	3969800000	12477	880	11830	76502;76503;76504;76505;76506;76507;76508;76509;76510;76511;76512;76513;76514;76515;76516;76517;76518;76519;76520;76521	103444;103445;103446;103447;103448;103449;103450;103451;103452;103453;103454;103455;103456;103457;103458;103459;103460;103461;103462;103463;103464;103465;103466;103467;103468;103469;103470;103471;103472;103473;103474;103475;103476;103477;103478;103479;103480;103481;103482;103483;103484;103485;103486	103484			43	
ELISWGAPGSADSTR	0	Unmodified	1545.7423	0.74233534	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									2	1	2	58.155	57.565	2	2.4495E-07	52433	160511_QHF_FH_JSI12i_1	88.187	64.2			1.0837	1.0608	26.169	4	3	Median	NaN	NaN	NaN	0	0	Median	0.952	1.1163	41.997	2	1	Median	1.2404	1.1901	NaN	1	1	Median	0.94682	0.94554	NaN	1	1	Median	106250000	49746000	56500000	0	0	0	57852000	28469000	29382000	31809000	13044000	18765000	16585000	8232300	8353100	12478	2211	11831	76522;76523;76524;76525;76526	103487;103488;103489;103490;103491	103489			5	
ELITLAK	1	Unmodified	786.48511	0.485105	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	42.795	42.02	2	0.0094456	36003	160511_QHF_FH_JSI12i_2	79.116	29.758			1.1948	1.1468	22.801	6	0	Median	1.2914	1.0998	NaN	1	0	Median	1.1621	1.3884	21.121	2	0	Median	1.2222	1.2124	16.176	2	0	Median	0.73248	0.82248	NaN	1	0	Median	793860000	392820000	401040000	146680000	62237000	84444000	200740000	114500000	86237000	285760000	132610000	153140000	160690000	83469000	77217000	12479	989	11832	76527;76528;76529;76530;76531;76532	103492;103493;103494;103495;103496;103497	103493			6	
ELIVGEIFVR	0	Unmodified	1173.6758	0.67575932	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				86.325	85.795	2	0.0042173	75681	160511_QHF_FH_JSI9i_2	66.692	53.655			1.7302	1.5565	NaN	1	1	Median	1.7302	1.5565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4475800	1776000	2699800	4475800	1776000	2699800	0	0	0	0	0	0	0	0	0	12480	486	11833	76533	103498	103498			1	
ELKAFNIR	1	Acetyl (K)	1031.5764	0.57637963	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		65.637	54.721	2	0.0061911	29663	160513_QHF_FH_JSI11Kac_5	83.206	46.505			0.34133	0.33452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34133	0.33452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10483000	7191000	3291900	0	0	0	0	0	0	10483000	7191000	3291900	0	0	0	12481	2734	11834	76534	103499	103499	2654		1	
ELKDDLK	2	Acetyl (K)	901.47566	0.47566253	1018	P12429	ANXA3	Annexin A3	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			37.392	28.585	2	0.035893	15911	160513_QHF_FH_JSI10Kac_3	66.621	12.072			0.84271	0.95531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84271	0.95531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2192400	1056200	1136300	0	0	0	2192400	1056200	1136300	0	0	0	0	0	0	12482	1018	11835	76535	103500	103500			1	
ELKEIQYGIR	1	Acetyl (K)	1289.698	0.69795133	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14.3	0.471							2	1			1		2	65.423	54.709	2	0.0083014	29689	160513_QHF_FH_JSI10Kac_4	61.65	41.346			0.69817	0.82521	65.854	3	1	Median	NaN	NaN	NaN	0	0	Median	0.69817	0.82521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43113	0.47182	81.178	2	1	Median	29381000	19135000	10246000	0	0	0	13565000	8959300	4606100	0	0	0	15816000	10176000	5639700	12483	286	11836	76536;76537;76538	103501;103502;103503	103501	155		3	
ELKELIQK	2	Acetyl (K)	1041.607	0.60701105	852	P06703	S100A6	Protein S100-A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						4	4				4	2	2	59.736	49.644	2	0.00083097	26662	160513_QHF_FH_JSI11Kac_3	93.649	7.9731			0.0026643	0.0026431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0026643	0.0026431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	207540000	177890000	29650000	0	0	0	78617000	49109000	29508000	91539000	91397000	142200	37382000	37382000	0	12484	852	11837	76539;76540;76541;76542;76543;76544;76545;76546	103504;103505;103506;103507;103508;103509;103510;103511	103506	513;514		8	
ELKLTDYR	1	Acetyl (K)	1078.5659	0.56587452	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	56.175	45.394	2	0.0084206	26228	160513_QHF_FH_JSI11Kac_4	80.165	6.5008			0.24797	0.25247	139.36	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.097396	0.094239	NaN	1	1	Median	0.63134	0.67636	NaN	1	1	Median	8241800	6588900	1652800	0	0	0	0	0	0	2815800	2662100	153770	5426000	3926900	1499100	12485	2364	11838	76547;76548	103512;103513	103512	2434		2	
ELKTDSSPNQAR	1	Acetyl (K)	1386.6739	0.67392142	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	22.196	14.867	2	0.0031474	9666	160513_QHF_FH_JSI11Kac_3	70.977	53.113			0.28847	0.27907	99.288	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2458	1.4731	NaN	1	0	Median	0.28847	0.27907	NaN	1	0	Median	0.2305	0.25074	NaN	1	0	Median	17854000	12235000	5618900	0	0	0	3872200	1529300	2343000	10026000	7593800	2431700	3956500	3112400	844140	12486	1281	11839	76549;76550;76551	103514;103515;103516;103517	103514	1192		4	
ELKTVTFSK	2	Acetyl (K)	1093.6019	0.60192568	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	57.045	46.414	2	0.041426	26150	160513_QHF_FH_JSI12Kac_4	53.751	17.194			0.20882	0.22178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20882	0.22178	NaN	1	1	Median	4954200	4604200	349930	0	0	0	0	0	0	0	0	0	4954200	4604200	349930	12487	2340	11840	76552	103518	103518	2428		1	
ELLAAKQK	2	Acetyl (K)	941.55458	0.55458155	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		35.338	26.045	2	0.020218	16048	160513_QHF_FH_JSI11Kac_4	61.999	17.552			0.78396	0.76316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78396	0.76316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10558000	6206000	4351900	0	0	0	0	0	0	10558000	6206000	4351900	0	0	0	12488	3156	11841	76553	103519	103519	2783		1	
ELLAALQK	1	Unmodified	884.53312	0.53311783	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	48.787	47.991	2	0.0061243	41959	160511_QHF_FH_JSI9i_2	72.138	25.071			3.4378	2.1366	63.793	6	6	Linear	1.7294	1.4745	NaN	1	1	Median	1.8288	2.1366	14.837	2	2	Median	1.4696	1.4324	106.1	2	2	Median	3.7872	4.2376	NaN	1	1	Median	325000000	128420000	196580000	60101000	30141000	29961000	88904000	34819000	54085000	105550000	39332000	66219000	70449000	24134000	46315000	12489	3432	11842	76554;76555;76556;76557;76558;76559	103520;103521;103522;103523;103524;103525	103523			6	
ELLADQNLK	1	Unmodified	1042.5659	0.56587452	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	2	2	1	38.637	35.544	2	0.00017136	32415	160511_QHF_FH_JSI12i_1	87.476	36.869			1.0762	1.0818	25.655	4	0	Median	1.4983	1.2396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88785	0.85548	30.508	2	0	Median	1.0526	1.1025	NaN	1	0	Median	436610000	216180000	220430000	113680000	52327000	61358000	0	0	0	160890000	79155000	81731000	162040000	84697000	77340000	12490	2561	11843	76560;76561;76562;76563;76564;76565	103526;103527;103528;103529;103530;103531;103532;103533;103534	103529			9	
ELLAEAK	1	Unmodified	772.43307	0.43306943	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.625	19.145	2	0.044649	16483	160511_QHF_FH_JSI12i_1	45.081	0			0.97503	1.0281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97503	1.0281	NaN	1	0	Median	141250000	67657000	73595000	0	0	0	0	0	0	0	0	0	141250000	67657000	73595000	12491	2911	11844	76566	103535;103536	103535			2	
ELLAFQTSEK	1	Unmodified	1164.6027	0.60265396	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	50.99	50.157	2	1.0362E-05	43192	160511_QHF_FH_JSI11i_2	114.84	53.868			0.69835	0.67357	57.937	6	6	Median	0.59572	0.50153	NaN	1	1	Median	0.46849	0.56086	75.739	2	2	Median	0.2675	0.27294	NaN	1	1	Median	0.89877	0.95938	8.3087	2	2	Median	804180000	575890000	228290000	93125000	61964000	31161000	296650000	232280000	64366000	221210000	179160000	42053000	193200000	102490000	90712000	12492	3921	11845	76567;76568;76569;76570;76571;76572	103537;103538;103539;103540;103541;103542	103541			6	
ELLALCLK	1	Unmodified	958.55214	0.55213871	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.225	68.928	2	0.0075435	59410	160511_QHF_FH_JSI12i_2	68.915	48.633			0.89764	1.0152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89764	1.0152	NaN	1	1	Median	10805000	4237800	6567100	0	0	0	0	0	0	0	0	0	10805000	4237800	6567100	12493	4021	11846	76573	103543	103543			1	
ELLALDSVDPEGR	0	Unmodified	1412.7147	0.7147236	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	71.28	68.729	2	7.7705E-16	61682	160511_QHF_FH_JSI9i_1	166.69	138.95			1.0096	1.1076	41.701	5	1	Median	1.3563	1.1076	NaN	1	0	Median	1.5119	1.7706	58.209	2	0	Median	1.0096	0.98272	NaN	1	0	Median	0.96076	1.0115	NaN	1	1	Median	918260000	452290000	465970000	223130000	92221000	130910000	247880000	132400000	115480000	219610000	106290000	113320000	227640000	121380000	106260000	12494	732	11847	76574;76575;76576;76577;76578	103544;103545;103546;103547;103548;103549;103550;103551;103552	103551			9	
ELLASAPTGSGK	1	Unmodified	1129.5979	0.59790293	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	30.379	29.458	2	0.0045769	26323	160511_QHF_FH_JSI12i_1	63.408	4.6651			0.28471	0.26651	15.968	2	2	Median	0.28923	0.23805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28026	0.29836	NaN	1	1	Median	2058100000	1552300000	505840000	801240000	619550000	181690000	0	0	0	0	0	0	1256900000	932720000	324150000	12495	5530	11848	76579;76580	103553;103554	103553			2	
ELLASLR	0	Unmodified	800.4756	0.47560295	2363	Q13158	FADD	FAS-associated death domain protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		29.01	28.637	2	0.035052	24145	160511_QHF_FH_JSI11i_2	50.966	0			1.4767	1.5005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4767	1.5005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62846000	32358000	30488000	0	0	0	0	0	0	62846000	32358000	30488000	0	0	0	12496	2363	11849	76581	103555	103555			1	
ELLASTILTHVPVK	1	Unmodified	1519.8974	0.89737941	5057	Q9NW08	POLR3B	DNA-directed RNA polymerase III subunit RPC2	yes	yes	0	0	0	0		By matching	By MS/MS		2.33	0.471		2	1								1	2		81.936	81.51	3	2.953E-05	72587	160511_QHF_FH_JSI11i_3	101.43	82.7			0.93866	1.2333	13.781	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8618	1.0511	NaN	1	0	Median	1.1141	1.1069	19.026	2	0	Median	NaN	NaN	NaN	0	0	Median	116390000	53866000	62529000	0	0	0	37931000	15824000	22107000	78464000	38042000	40421000	0	0	0	12497	5057	11850	76582;76583;76584	103556;103557	103556			2	
ELLAVPDNYK	1	Unmodified	1160.6077	0.60773933	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	55.707	54.859	2	2.4048E-05	49868	160511_QHF_FH_JSI11i_1	97.857	55.461			0.66305	0.7884	50.691	7	0	Median	0.66718	0.54903	73.86	2	0	Median	0.53434	0.64619	28.129	2	0	Median	0.94885	0.9182	NaN	1	0	Median	0.4711	0.50935	81.014	2	0	Median	2091200000	1097300000	993870000	466670000	247120000	219560000	500430000	281100000	219330000	528320000	260670000	267650000	595740000	308400000	287340000	12498	5697	11851	76585;76586;76587;76588;76589;76590;76591	103558;103559;103560;103561;103562;103563;103564;103565;103566;103567;103568;103569;103570;103571	103559			13	
ELLAWDPPQELQADAAR	0	Unmodified	1921.9534	0.95339074	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	83.768	83.193	2;3	1.1995E-30	75872	160511_QHF_FH_JSI12i_1	232.25	187.18			1.0016	1.0702	12.938	9	1	Median	1.2695	1.0695	5.6677	2	0	Median	0.87865	1.0457	3.271	2	0	Median	1.1228	1.1012	24.141	3	1	Median	0.97548	1.0637	1.2507	2	0	Median	722670000	357550000	365120000	139630000	60334000	79292000	197580000	108980000	88594000	211090000	101190000	109900000	174380000	87038000	87339000	12499	950	11852	76592;76593;76594;76595;76596;76597;76598;76599;76600	103572;103573;103574;103575;103576;103577;103578;103579;103580;103581;103582;103583;103584;103585;103586;103587;103588;103589;103590;103591;103592;103593;103594;103595;103596	103582			25	
ELLDGGANPLQR	0	Unmodified	1281.6677	0.66771383	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	52.087	51.413	2	1.1594E-21	46377	160511_QHF_FH_JSI10i_1	157.49	121.62			0.89953	0.86854	10.316	3	1	Plateau	1.1561	0.94893	NaN	1	0	Median	0.89953	1.0432	NaN	1	1	Median	0.88752	0.84888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	363080000	190200000	172880000	107500000	52498000	55003000	103020000	56820000	46204000	152560000	80884000	71674000	0	0	0	12500	4620	11853	76601;76602;76603;76604;76605;76606	103597;103598;103599;103600;103601;103602;103603;103604	103601			8	
ELLDLHK	1	Unmodified	866.48617	0.48616764	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	3	1	2	33.795	32.738	3	0.0030432	27667	160511_QHF_FH_JSI11i_2	68.915	28.812			2.106	1.9668	100.42	6	5	Median	2.1492	1.8493	NaN	1	1	Median	1.0389	1.2745	108.87	2	2	Median	2.0637	2.0919	NaN	1	1	Median	1.9406	2.1317	188.23	2	1	Median	228850000	95885000	132970000	24632000	8170500	16462000	74119000	34705000	39414000	57197000	22442000	34755000	72902000	30568000	42334000	12501	2789	11854	76607;76608;76609;76610;76611;76612;76613;76614	103605;103606;103607;103608;103609;103610;103611;103612	103610			8	
ELLDMMIAEEESLK	1	Unmodified	1649.7892	0.78921045	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	99.222	98.98	2	0.00047166	85038	160511_QHF_FH_JSI12i_2	95.094	74.095			0.65126	0.7024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65126	0.7024	NaN	1	1	Median	24610000	14446000	10165000	0	0	0	0	0	0	0	0	0	24610000	14446000	10165000	12502	351	11855	76615	103613	103613			1	
ELLDTVNNVFK	1	Unmodified	1290.682	0.68196691	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	73.712	73.059	2	6.8431E-18	66030	160511_QHF_FH_JSI10i_1	156.92	102.95			1.1146	1.0919	14.062	6	1	Median	1.2055	0.97979	NaN	1	0	Median	0.85652	1.0176	NaN	1	0	Median	1.0833	1.0805	17.584	2	1	Median	1.1797	1.261	10.417	2	0	Median	643270000	344470000	298800000	69356000	31624000	37732000	175140000	108070000	67069000	195160000	102650000	92509000	203620000	102130000	101490000	12503	4445	11856	76616;76617;76618;76619;76620;76621;76622;76623;76624	103614;103615;103616;103617;103618;103619;103620;103621;103622;103623;103624;103625	103618			12	
ELLDTVNNVFKK	2	Unmodified	1418.7769	0.77692993	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	65.694	65.093	2;3	4.6024E-06	57377	160511_QHF_FH_JSI9i_2	116.03	94.966			1.2646	1.1744	190.47	2	2	Median	5.2891	4.5155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30237	0.30542	NaN	1	1	Median	214240000	146060000	68175000	37698000	7705700	29992000	0	0	0	0	0	0	176540000	138360000	38183000	12504	4445	11857	76625;76626	103626;103627	103626			2	
ELLEIVK	1	Unmodified	842.51132	0.51131975	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	55.355	54.564	2	0.0080209	49371	160511_QHF_FH_JSI11i_1	85.265	27.098			0.92082	0.88176	41.502	7	2	Median	1.5426	1.2865	53.423	2	1	Median	0.42996	0.51263	NaN	1	1	Median	0.74681	0.74493	21.79	2	0	Median	0.98037	1.0643	4.8819	2	0	Median	563630000	315180000	248450000	103910000	52109000	51796000	53830000	34248000	19581000	247940000	142880000	105060000	157950000	85942000	72011000	12505	1370	11858	76627;76628;76629;76630;76631;76632;76633	103628;103629;103630;103631	103628			4	
ELLEIVKK	2	Unmodified	970.60628	0.60628277	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	43.613	42.967	2	0.0015637	36788	160511_QHF_FH_JSI12i_3	119.27	83.394			0.39613	0.33114	27.054	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.35924	0.44332	NaN	1	1	Median	0.43682	0.40168	NaN	1	1	Median	0.4382	0.45852	45.587	2	2	Median	505880000	297300000	208580000	0	0	0	86863000	49751000	37112000	150360000	84391000	65973000	268650000	163150000	105500000	12506	1370	11859	76634;76635;76636;76637	103632;103633;103634;103635;103636	103636			5	
ELLELASR	0	Unmodified	929.5182	0.51819605	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	47.311	46.517	2	0.0060803	40689	160511_QHF_FH_JSI9i_2	63.673	25.54			0.88829	0.92305	11.219	6	0	Median	1.291	1.1038	NaN	1	0	Median	0.68337	0.81743	0.23461	2	0	Median	0.93337	0.92641	3.4315	2	0	Median	0.84913	0.94228	NaN	1	0	Median	619970000	322440000	297530000	89251000	38554000	50697000	151910000	87743000	64171000	237090000	115550000	121540000	141710000	80589000	61125000	12507	2147	11860	76638;76639;76640;76641;76642;76643	103637;103638;103639;103640	103640			4	
ELLEPLFK	1	Unmodified	987.56408	0.56408361	4035	Q96DZ1	ERLEC1	Endoplasmic reticulum lectin 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		73.971	73.275	2	0.0030985	64272	160511_QHF_FH_JSI11i_2	75.109	64.236			1.2896	1.4336	36.703	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4533	1.8584	NaN	1	1	Median	1.1444	1.1059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30802000	14269000	16532000	0	0	0	13386000	6329200	7056400	17416000	7940200	9476000	0	0	0	12508	4035	11861	76644;76645	103641;103642	103641			2	
ELLEQISAFDNVPR	0	Unmodified	1629.8362	0.83623572	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			82.923	82.771	2	0.028118	75316	160511_QHF_FH_JSI10i_1	48.568	4.6712			0.29889	0.35036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29889	0.35036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27982000	24406000	3576000	0	0	0	27982000	24406000	3576000	0	0	0	0	0	0	12509	5095	11862	76646	103643	103643			1	
ELLESLPLSK	1	Unmodified	1127.6438	0.64379049	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		68.082	67.495	2	0.0091221	58984	160511_QHF_FH_JSI11i_2	50.292	11.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12510	2343	11863	76647	103644	103644			1	
ELLESNFTLVGDDGTNK	1	Unmodified	1850.8898	0.88978743	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	74.601	74.118	2;3	5.1061E-137	67090	160511_QHF_FH_JSI10i_1	352.49	300.57			0.98211	0.97624	36.271	7	4	Median	1.1854	0.99594	23.357	2	2	Median	0.65109	0.76872	33.797	2	1	Median	0.8459	0.81552	71.951	2	1	Median	0.98211	1.028	NaN	1	0	Median	381990000	192620000	189370000	67364000	31858000	35506000	116390000	64158000	52237000	103990000	54388000	49602000	94244000	42216000	52027000	12511	3959	11864	76648;76649;76650;76651;76652;76653;76654;76655	103645;103646;103647;103648;103649;103650;103651;103652;103653;103654;103655	103651			11	
ELLEYDLQQR	0	Unmodified	1305.6565	0.65648044	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	54.094	53.297	2	9.2833E-06	48337	160511_QHF_FH_JSI11i_1	105.52	82.201			1.1296	1.0392	57.295	7	1	Median	1.1377	0.94402	0.45863	2	0	Median	0.95963	1.1496	NaN	1	0	Median	1.0256	1.0394	7.5935	2	1	Median	2.053	2.1868	105.21	2	0	Median	401540000	179110000	222430000	102950000	54773000	48178000	77890000	40358000	37532000	126910000	56697000	70210000	93794000	27281000	66513000	12512	2947	11865	76656;76657;76658;76659;76660;76661;76662;76663;76664	103656;103657;103658;103659;103660;103661;103662;103663;103664;103665;103666	103657			11	
ELLFHHEWVVK	1	Unmodified	1435.7612	0.76122028	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.16	6.49			10						9	2	4	5	8	63.711	59.317	2;3;4	1.8998E-10	31874	160513_QHF_FH_JSI10Kac_6	125.75	100.09			1.2056	1.0684	48.387	19	4	Median	1.1846	1.0355	4.4172	2	0	Median	0.68593	0.81788	84.066	4	2	Median	1.2658	1.1866	48.558	5	1	Median	1.042	1.1204	29.828	8	1	Median	1181600000	559990000	621610000	73172000	31786000	41385000	254850000	132670000	122180000	350600000	154260000	196340000	502980000	241270000	261710000	12513	3914	11866	76665;76666;76667;76668;76669;76670;76671;76672;76673;76674;76675;76676;76677;76678;76679;76680;76681;76682;76683	103667;103668;103669;103670;103671;103672;103673;103674;103675;103676;103677;103678;103679;103680;103681;103682;103683;103684;103685;103686;103687;103688;103689;103690;103691;103692;103693;103694;103695;103696	103696			29	
ELLFHPALFEVPSLK	1	Unmodified	1738.9658	0.96579333	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.07	100.99	3	3.1215E-10	88647	160511_QHF_FH_JSI11i_2	119.56	115.31			0.99151	0.95139	16.907	6	0	Median	0.92308	0.78558	NaN	1	0	Median	0.671	0.80887	NaN	1	0	Median	1.0714	1.0428	6.5329	2	0	Median	0.92548	1.0477	20.075	2	0	Median	684400000	363900000	320500000	81621000	40442000	41178000	156680000	93783000	62901000	250420000	125840000	124590000	195670000	103830000	91840000	12514	5316	11867	76684;76685;76686;76687;76688;76689	103697;103698;103699;103700;103701;103702;103703;103704;103705	103702			9	
ELLFLSNANPSLLER	0	Unmodified	1714.9254	0.92538508	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.442		11	4							3	3	5	4	96.406	96.222	2;3	2.2752E-40	84553	160511_QHF_FH_JSI9i_2	248.32	198.04			1.178	1.1268	43.061	12	5	Median	1.4018	1.2069	10.792	3	2	Median	0.94158	1.1566	28.255	2	1	Median	1.1565	1.1174	51.372	4	2	Median	1.1525	1.2055	62.629	3	0	Plateau	494230000	236340000	257890000	86407000	36282000	50125000	87943000	43537000	44405000	155920000	76147000	79775000	163960000	80371000	83588000	12515	1733	11868	76690;76691;76692;76693;76694;76695;76696;76697;76698;76699;76700;76701;76702;76703;76704	103706;103707;103708;103709;103710;103711;103712;103713;103714;103715;103716;103717;103718;103719;103720;103721;103722;103723;103724;103725;103726;103727;103728	103713			23	
ELLGQGLLLR	0	Unmodified	1110.6761	0.67609367	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.39		4	4					2	3	4	2	3	4	78.761	74.553	2	7.3953E-26	67799	160511_QHF_FH_JSI9i_2	193.41	106.09			1.1466	1.1361	11.346	13	0	Median	1.371	1.1688	6.6005	4	0	Median	1.0266	1.2287	9.9798	2	0	Median	1.1309	1.1361	12.435	3	0	Median	0.92647	1.0206	14.464	4	0	Median	2294600000	1128000000	1166600000	405150000	181260000	223890000	435010000	245920000	189100000	821480000	383560000	437920000	633000000	317290000	315720000	12516	40	11869	76705;76706;76707;76708;76709;76710;76711;76712;76713;76714;76715;76716;76717	103729;103730;103731;103732;103733;103734;103735;103736;103737;103738;103739;103740;103741;103742;103743;103744;103745;103746;103747;103748;103749;103750;103751;103752;103753	103743			25	
ELLGWVSTLAR	0	Unmodified	1243.6925	0.69247202	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		92.015	91.505	2	0.00072582	76401	160511_QHF_FH_JSI10i_3	68.893	39.806			1.8833	2.0021	97.378	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82622	1.0057	NaN	1	0	Median	4.2931	3.986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23011000	5430200	17581000	0	0	0	6837800	3112300	3725500	16173000	2318000	13855000	0	0	0	12517	5458	11870	76718;76719	103754;103755	103755			2	
ELLHHTESAKSNK	2	Acetyl (K)	1534.774	0.77396981	5793				yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		92.181	84.634	2;3	0.018796	47008	160513_QHF_FH_JSI11Kac_6	59.542	39.238	+		1.1564	1.3421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1564	1.3421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110470000	66710000	43757000	0	0	0	86652000	42895000	43757000	23816000	23816000	0	0	0	0	12518	5793	11871	76720;76721	103756;103757	103756	3563		2	
ELLHSQNTWLNTELK	1	Unmodified	1824.937	0.9370124	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	4	4	65.186	64.629	2;3	2.7441E-21	55651	160511_QHF_FH_JSI12i_3	204.49	164.57			0.96704	0.99592	23.322	10	1	Median	1.0903	0.92296	NaN	1	0	Median	0.87433	1.0535	7.8054	2	1	Median	0.96704	0.93609	33.366	4	0	Median	1.074	1.0723	15.664	3	0	Median	1198500000	549380000	649120000	94741000	37593000	57148000	220900000	112780000	108120000	452150000	223180000	228980000	430710000	175830000	254880000	12519	1016	11872	76722;76723;76724;76725;76726;76727;76728;76729;76730;76731;76732	103758;103759;103760;103761;103762;103763;103764;103765;103766;103767;103768;103769	103769			12	
ELLHSVHPESPNLK	1	Unmodified	1598.8417	0.84165545	5483	Q9Y217	MTMR6	Myotubularin-related protein 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.962	36.88	4	0.015123	31328	160511_QHF_FH_JSI12i_3	33.787	28.986			1.0521	1.0569	5.8445	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0603	1.0142	NaN	1	0	Median	1.044	1.1015	NaN	1	0	Median	78519000	41349000	37170000	0	0	0	0	0	0	29899000	14554000	15345000	48620000	26794000	21825000	12520	5483	11873	76733;76734	103770;103771;103772;103773	103772			4	
ELLIFNK	1	Unmodified	875.51165	0.5116541	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.14	6.56	3	4	3				3	5	4	5	7	5	5	67.721	61.797	2	0.00070061	53721	160511_QHF_FH_JSI11i_2	129.96	49.584			1.008	1.0717	35.095	22	4	Median	1.202	1.0399	41.072	5	2	Median	1.0236	1.2234	43.897	7	1	Median	0.94865	0.92955	22.557	5	0	Median	1.0404	1.1093	31.418	5	1	Median	3029000000	1580700000	1448300000	576220000	259280000	316940000	764930000	412590000	352340000	929990000	517490000	412490000	757880000	391320000	366560000	12521	939	11874	76735;76736;76737;76738;76739;76740;76741;76742;76743;76744;76745;76746;76747;76748;76749;76750;76751;76752;76753;76754;76755;76756	103774;103775;103776;103777;103778;103779;103780;103781;103782;103783;103784;103785;103786;103787;103788;103789;103790;103791;103792;103793;103794;103795;103796;103797;103798;103799;103800;103801;103802;103803;103804;103805;103806;103807;103808;103809;103810	103798			37	
ELLIIGGVAAR	0	Unmodified	1110.6761	0.67609367	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.33	6.13		2						1		1	1	1		72.918	68.826	2	0.002646	35675	160513_QHF_FH_JSI11Kac_5	69.423	27.314			0.69842	0.60719	24.367	3	2	Median	0.69842	0.60719	NaN	1	1	Median	0.42167	0.519	NaN	1	1	Median	0.84189	0.8371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70346000	44990000	25356000	31954000	19126000	12828000	33836000	23239000	10597000	4556000	2625300	1930700	0	0	0	12522	3828	11875	76757;76758;76759	103811;103812;103813	103812			3	
ELLIQFYK	1	Unmodified	1052.5906	0.59063271	5381;5387	Q9UKV8;Q9UL18;Q9HCK5	AGO2;AGO1;AGO4	Protein argonaute-2;Protein argonaute-1;Protein argonaute-4	no	no	0	0	0	0				By MS/MS	2	0		1											1	76.398	75.155	2	0.0036871	64983	160511_QHF_FH_JSI12i_2	77.674	69.984			1.5784	1.6868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5784	1.6868	NaN	1	1	Median	17395000	7230700	10164000	0	0	0	0	0	0	0	0	0	17395000	7230700	10164000	12523	5381;5387	11876	76760	103814	103814			1	
ELLIQIFSTPR	0	Unmodified	1315.75	0.7499869	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	96.894	96.611	2	9.6964E-09	84679	160511_QHF_FH_JSI11i_2	146.11	130.85			0.82759	0.90712	13.565	5	0	Median	1.1936	1.0548	NaN	1	0	Median	0.83851	0.97832	10.686	2	0	Median	0.82759	0.81927	NaN	1	0	Median	0.72684	0.79185	NaN	1	0	Median	183760000	94556000	89200000	32674000	15866000	16808000	65769000	36702000	29066000	47811000	22593000	25218000	37502000	19395000	18107000	12524	3723	11877	76761;76762;76763;76764;76765;76766	103815;103816;103817;103818;103819;103820;103821;103822;103823;103824	103821			10	
ELLITDLLPDNRK	1	Unmodified	1538.8668	0.86680757	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	85.319	84.766	3	2.6619E-05	75534	160511_QHF_FH_JSI10i_2	91.032	79.593			1.0054	1.0496	3.3759	5	1	Median	1.1645	1.0314	NaN	1	0	Median	0.87511	1.0555	NaN	1	0	Median	1.0543	1.0176	4.3775	2	0	Median	1.0054	1.0798	NaN	1	1	Median	212490000	103770000	108720000	36652000	17953000	18699000	53378000	30477000	22901000	108130000	47379000	60753000	14327000	7957700	6368900	12525	2213	11878	76767;76768;76769;76770;76771	103825;103826;103827;103828;103829;103830	103830			6	
ELLKPNASVALHK	2	Acetyl (K)	1460.8351	0.83511351	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		63.532	52.611	3	0.027325	28679	160513_QHF_FH_JSI11Kac_5	41.996	21.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1665000	1665000	0	0	0	0	0	0	0	1665000	1665000	0	0	0	0	12526	1567	11879	76772	103831	103831			1	
ELLLAEK	1	Unmodified	814.48002	0.48001963	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.28	5	5					3			2	5	3	3	41.732	38.58	2	0.0057077	34086	160511_QHF_FH_JSI9i_1	97.798	18.682			0.96876	0.96313	53.633	12	7	Median	1.2308	1.0291	9.4685	2	1	Median	0.88806	1.0531	74.703	4	3	Median	0.93947	0.96377	13.84	3	1	Median	0.76056	0.84291	82.323	3	2	Median	1761700000	941800000	819850000	317940000	158290000	159650000	506080000	288440000	217640000	565580000	295020000	270550000	372060000	200050000	172010000	12527	1604	11880	76773;76774;76775;76776;76777;76778;76779;76780;76781;76782;76783;76784;76785	103832;103833;103834;103835;103836;103837;103838;103839;103840;103841;103842;103843;103844;103845;103846	103839			15	
ELLLPDTER	0	Unmodified	1084.5764	0.57643921	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	1	3	51.411	50.738	2	0.00057567	45176	160511_QHF_FH_JSI9i_1	78.113	58.409			1.0165	1.0567	5.6633	4	2	Median	1.2788	1.0424	NaN	1	0	Median	0.95725	1.1142	NaN	1	0	Median	1.0795	1.0712	NaN	1	1	Median	0.93552	0.97398	NaN	1	1	Median	573440000	309460000	263980000	135560000	64572000	70989000	154970000	92989000	61981000	130010000	66329000	63685000	152890000	85566000	67324000	12528	3741	11881	76786;76787;76788;76789;76790;76791	103847;103848;103849;103850;103851;103852;103853	103851			7	
ELLLPGNNRK	1	Unmodified	1152.6615	0.66150624	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			31.105	29.714	2;3	0.0015512	24287	160511_QHF_FH_JSI9i_3	62.2	46.538			0.93309	0.82047	25.263	3	1	Plateau	1.1611	0.95521	32.264	2	0	Median	0.99944	1.1527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151080000	70230000	80846000	82685000	36989000	45696000	68391000	33241000	35149000	0	0	0	0	0	0	12529	834	11882	76792;76793;76794	103854;103855;103856;103857	103857			4	
ELLLPNWQGSGSHGLTIAQR	0	Unmodified	2176.1389	0.1389001	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		80.6	79.793	3	3.6271E-100	65683	160511_QHF_FH_JSI9i_3	212.83	180.65			0.99421	0.85163	5.4639	5	1	Median	1.0679	0.87852	5.9721	2	1	Median	0.70252	0.84064	1.838	2	0	Median	0.99421	0.93775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	710130000	358070000	352060000	301360000	136940000	164410000	302720000	175000000	127720000	106060000	46128000	59928000	0	0	0	12530	2286	11883	76795;76796;76797;76798;76799	103858;103859;103860;103861;103862;103863;103864;103865;103866	103862			9	
ELLLQPVTISR	0	Unmodified	1267.75	0.7499869	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		4	4	4	3	74.478	69.782	2	5.5202E-18	61377	160511_QHF_FH_JSI12i_2	159.34	121.25			0.92779	1.1733	12.778	15	3	Linear	1.1064	0.9165	20.268	4	1	Median	0.78135	0.921	12.85	4	1	Median	1.0256	1.019	8.7058	4	0	Median	0.96264	1.0314	9.2978	3	1	Plateau	1737200000	854440000	882790000	319970000	141150000	178820000	412470000	224540000	187930000	604500000	279060000	325440000	400290000	209690000	190600000	12531	1905	11884	76800;76801;76802;76803;76804;76805;76806;76807;76808;76809;76810;76811;76812;76813;76814	103867;103868;103869;103870;103871;103872;103873;103874;103875;103876;103877;103878;103879;103880;103881;103882;103883;103884;103885;103886;103887;103888;103889	103870			22	
ELLLSAIDSVNATSK	1	Unmodified	1559.8407	0.8406524	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	80.694	79.905	2	1.411E-29	70496	160511_QHF_FH_JSI9i_2	184.1	109.25			1.0518	1.0947	14.297	4	3	Median	1.329	1.1136	NaN	1	0	Median	1.1072	1.3118	NaN	1	1	Median	0.91396	0.92593	NaN	1	1	Median	0.9992	1.0761	NaN	1	1	Median	93925000	49895000	44030000	26612000	12895000	13717000	15667000	7437100	8230100	20003000	12136000	7867100	31643000	17427000	14216000	12532	1580	11885	76815;76816;76817;76818;76819;76820	103890;103891;103892;103893;103894;103895;103896	103893			7	
ELLLSGPPEVAAPDTPYLHVDSAAQR	0	Unmodified	2745.3974	0.39735921	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		88.186	87.698	3	5.6101E-10	77865	160511_QHF_FH_JSI10i_2	77.693	70.16			1.1159	1.1281	1.9974	2	1	Median	1.3521	1.1123	NaN	1	1	Median	0.92095	1.1442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53850000	21431000	32419000	25908000	10885000	15023000	27942000	10546000	17396000	0	0	0	0	0	0	12533	681	11886	76821;76822;76823	103897;103898;103899;103900	103899			4	
ELLLTGPGLEER	0	Unmodified	1325.7191	0.7190807	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							3	2	2	3	65.957	65.167	2	5.1786E-06	56838	160511_QHF_FH_JSI11i_2	122.98	86.287			0.96225	1.0518	25.892	8	1	Median	1.2298	1.0686	NaN	1	0	Median	0.79571	0.96098	11.936	2	0	Median	1.0984	1.0933	4.6296	2	0	Median	0.89339	0.92736	46.63	3	1	Median	869100000	452870000	416230000	105730000	45946000	59786000	176280000	103900000	72379000	266550000	124610000	141940000	320540000	178410000	142130000	12534	3506	11887	76824;76825;76826;76827;76828;76829;76830;76831;76832;76833	103901;103902;103903;103904;103905;103906;103907;103908	103908			7	
ELLLYGR	0	Unmodified	862.49125	0.49125301	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	48.476	47.484	2	0.034652	40732	160511_QHF_FH_JSI11i_2	50.025	8.7223			1.0563	1.03	14.452	3	0	Plateau	1.5387	1.324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0563	1.0268	NaN	1	0	Median	1.1672	1.3136	NaN	1	0	Median	175860000	74443000	101420000	44730000	18382000	26348000	0	0	0	81801000	36564000	45236000	49329000	19496000	29832000	12535	235	11888	76834;76835;76836	103909;103910	103910			2	
ELLNETEEEINK	1	Unmodified	1459.7042	0.70421849	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.306	44.883	2	0.00020898	40347	160511_QHF_FH_JSI10i_1	95.618	71.515			1.0581	1.2242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0581	1.2242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38747000	19703000	19045000	0	0	0	38747000	19703000	19045000	0	0	0	0	0	0	12536	204	11889	76837	103911	103911			1	
ELLNLAENNK	1	Unmodified	1156.6088	0.60880197	3095	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	43.909	43.51	2	1.918E-05	39172	160511_QHF_FH_JSI10i_1	109.88	71.585			0.42729	0.45319	16.234	2	2	Median	NaN	NaN	NaN	0	0	Median	0.33369	0.40404	NaN	1	1	Median	0.54714	0.50832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134310000	88423000	45884000	0	0	0	65362000	44641000	20721000	68945000	43782000	25164000	0	0	0	12537	3095	11890	76838;76839;76840	103912;103913;103914	103914			3	
ELLNPVVEFVSHPSTTCR	0	Unmodified	2084.0361	0.036074515	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	83.218	82.77	2;3	2.5528E-17	71597	160511_QHF_FH_JSI12i_3	166.57	156.65			1.2058	1.2934	23.141	6	1	Median	2.0934	1.8025	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98982	0.98409	2.0914	2	0	Median	1.3312	1.3953	6.731	3	0	Plateau	1535700000	707410000	828250000	135910000	46022000	89891000	0	0	0	701420000	371880000	329540000	698320000	289500000	408820000	12538	2094	11891	76841;76842;76843;76844;76845;76846;76847	103915;103916;103917;103918;103919;103920;103921;103922;103923;103924	103921			9	
ELLPEIR	0	Unmodified	868.50182	0.5018177	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.02	4	4	3				1	4		4	5	3	4	55.842	51.615	2	0.0033324	45472	160511_QHF_FH_JSI9i_2	105.2	0			0.99451	0.99992	15.266	15	1	Median	1.0619	1.1149	21.397	4	1	Linear	0.78122	0.92542	7.7115	5	0	Median	0.99576	1.0285	7.6891	3	0	Plateau	0.93028	1.0296	14.505	3	0	Median	2267500000	1159000000	1108500000	444710000	202990000	241720000	542340000	303450000	238890000	811220000	414130000	397100000	469200000	238450000	230760000	12539	1649	11892	76848;76849;76850;76851;76852;76853;76854;76855;76856;76857;76858;76859;76860;76861;76862;76863	103925;103926;103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937;103938;103939;103940;103941;103942;103943;103944;103945;103946;103947;103948;103949;103950	103943			26	
ELLPGSVMLGFAR	0	Unmodified	1388.7486	0.74860669	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	94.1	93.792	2	0.00070183	83495	160511_QHF_FH_JSI11i_3	83	55.258			1.1579	1.0661	24.084	3	3	Median	NaN	NaN	NaN	0	0	Median	0.64655	0.78456	NaN	1	1	Median	1.1579	1.0661	NaN	1	1	Median	1.1904	1.2616	NaN	1	1	Median	48966000	23703000	25263000	0	0	0	7287800	4435800	2852000	20560000	8972700	11587000	21119000	10295000	10824000	12540	2099	11893	76864;76865;76866	103951;103952;103953	103951			3	
ELLPLIYHHLLR	0	Unmodified	1515.8926	0.89256881	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	79.648	72.255	3;4	5.9514E-06	39953	160513_QHF_FH_JSI10Kac_6	92.611	81.376			0.88596	0.99359	28.867	4	0	Median	2.0377	1.7414	NaN	1	0	Median	0.8335	0.99359	4.3382	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90999	0.95596	NaN	1	0	Median	881480000	378510000	502970000	100830000	30340000	70494000	762130000	340450000	421680000	0	0	0	18515000	7715500	10800000	12541	2409	11894	76867;76868;76869;76870	103954;103955;103956;103957;103958;103959	103956			6	
ELLPNGLR	0	Unmodified	910.52362	0.52361577	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	2	2	48.628	44.414	2	0.00096891	38073	160511_QHF_FH_JSI12i_2	95.793	49.13			0.98723	1.0257	2.5456	6	1	Median	1.1779	1.012	NaN	1	1	Median	0.84987	1.0318	NaN	1	0	Median	1.0109	1.0114	1.1556	2	0	Median	0.97203	1.0638	0.80514	2	0	Median	635190000	294580000	340610000	109750000	42413000	67341000	140740000	70447000	70289000	234880000	103900000	130980000	149820000	77823000	71999000	12542	4193	11895	76871;76872;76873;76874;76875;76876	103960;103961;103962;103963;103964;103965;103966;103967	103960			8	
ELLPNGLRESISK	1	Unmodified	1454.8093	0.80929269	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			54.873	53.309	3	0.050418	44570	160511_QHF_FH_JSI10i_3	32.068	6.4205			1.5237	1.5077	21.645	2	2	Median	1.5574	1.2937	NaN	1	1	Median	1.4908	1.757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43214000	17448000	25766000	17040000	6188100	10852000	26174000	11259000	14914000	0	0	0	0	0	0	12543	4193	11896	76877;76878	103968;103969	103968			2	
ELLPSVR	0	Unmodified	812.4756	0.47560295	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	39.585	38.631	2	0.02937	32982	160511_QHF_FH_JSI12i_2	52.636	28.45			0.70831	0.86814	18.739	3	0	Plateau	1.0209	0.86814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6801	0.68626	NaN	1	0	Median	0.87391	0.99385	NaN	1	0	Median	152310000	75370000	76943000	29791000	13996000	15795000	0	0	0	71168000	39107000	32061000	51354000	22267000	29087000	12544	4380	11897	76879;76880;76881	103970;103971	103970			2	
ELLPVLISAMK	1	Unmodified	1212.7152	0.71518129	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.58	3	4	5						3	3	4	4	4	96.553	94.641	2	7.0676E-18	84693	160511_QHF_FH_JSI12i_2	178.22	166			0.91735	0.87792	24.551	15	5	Median	1.106	0.95794	6.9527	3	0	Plateau	0.80374	0.94566	36.168	4	2	Median	0.89455	0.87184	16.732	4	1	Median	0.97004	0.59398	33.62	4	2	Linear	1605200000	826030000	779130000	342710000	154940000	187770000	311470000	173260000	138200000	528230000	274980000	253250000	422740000	222850000	199900000	12545	1139	11898	76882;76883;76884;76885;76886;76887;76888;76889;76890;76891;76892;76893;76894;76895;76896	103972;103973;103974;103975;103976;103977;103978;103979;103980;103981;103982;103983;103984;103985;103986;103987;103988;103989;103990;103991;103992;103993;103994;103995;103996;103997;103998;103999;104000;104001;104002;104003;104004;104005;104006;104007	103979			36	
ELLPVLISAMK	1	Oxidation (M)	1228.7101	0.71009592	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0		By MS/MS		By MS/MS	14.5	0.5							1	1			1		1	82.959	72.502	2	0.020523	35373	160513_QHF_FH_JSI12Kac_5	45.161	7.9697			1.1208	1.1915	2.1115	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0982	1.1738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1439	1.2094	NaN	1	0	Median	3308000	1532500	1775500	0	0	0	1089200	553730	535450	0	0	0	2218800	978770	1240100	12546	1139	11898	76897;76898	104008	104008		770	1	
ELLQESALIR	0	Unmodified	1170.6608	0.66083754	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.3	1	4	1				2	3		3	2	4	2	63.355	57.974	2	4.1889E-11	50296	160511_QHF_FH_JSI11i_2	148.91	53.173			1.1365	0.97536	25.29	9	1	Median	1.265	1.0642	8.5295	3	0	Median	0.71263	0.87917	NaN	1	0	Median	0.7874	0.79444	45.911	3	1	Median	0.98481	1.0988	16.856	2	0	Median	1131200000	624790000	506380000	252950000	123450000	129500000	186530000	104010000	82513000	384530000	218950000	165580000	307180000	178380000	128800000	12547	2328	11899	76899;76900;76901;76902;76903;76904;76905;76906;76907;76908;76909	104009;104010;104011;104012;104013;104014;104015;104016;104017;104018;104019;104020	104018			12	
ELLQESALIRK	1	Unmodified	1298.7558	0.75580056	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.06		9	7					3	4	5	6	7	5	51.198	47.599	2;3	2.2397E-31	40486	160511_QHF_FH_JSI12i_3	170.52	145.05			0.94504	1.002	28.14	23	7	Median	1.1131	0.95882	47.389	5	3	Median	0.92808	1.0973	19.688	6	1	Median	1.0569	1.0728	27.393	7	2	Median	0.90562	0.98961	16.8	5	1	Median	4266100000	2087600000	2178500000	567170000	291280000	275890000	847750000	398880000	448870000	1705600000	736980000	968570000	1145700000	660460000	485200000	12548	2328	11900	76910;76911;76912;76913;76914;76915;76916;76917;76918;76919;76920;76921;76922;76923;76924;76925;76926;76927;76928;76929;76930;76931;76932	104021;104022;104023;104024;104025;104026;104027;104028;104029;104030;104031;104032;104033;104034;104035;104036;104037;104038;104039;104040;104041;104042;104043;104044;104045;104046;104047;104048;104049;104050;104051	104045			31	
ELLQFKK	2	Acetyl (K)	946.54877	0.54876789	3468	Q8IYH5	ZZZ3	ZZ-type zinc finger-containing protein 3	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			61.728	51.028	2	0.054509	27910	160513_QHF_FH_JSI10Kac_4	69.998	25.306			9.3492	11.409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9.3492	11.409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8229000	958720	7270200	0	0	0	8229000	958720	7270200	0	0	0	0	0	0	12549	3468	11901	76933	104052	104052			1	
ELLQHPFLK	1	Unmodified	1123.639	0.63897988	2366	Q13177;O75914	PAK2;PAK3	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	2	4	4	48.171	47.518	2;3	2.7085E-05	41670	160511_QHF_FH_JSI11i_3	82.749	76.714			0.98337	0.98514	26.661	12	3	Median	0.874	0.74459	4.0854	2	0	Median	0.59407	0.73079	22.227	2	0	Median	1.0699	1.0146	16.692	4	2	Median	1.1014	1.1762	19.073	4	1	Median	1053400000	457780000	595590000	103530000	46220000	57305000	145630000	92776000	52850000	428330000	162160000	266170000	375890000	156620000	219270000	12550	2366	11902	76934;76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945	104053;104054;104055;104056;104057;104058;104059;104060;104061;104062;104063;104064;104065	104053			13	
ELLQHPFLKLAK	2	Acetyl (K)	1477.8657	0.86568536	2366	Q13177;O75914	PAK2;PAK3	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3	yes	no	1	0	0	1			By MS/MS		16	0									1			1		76.689	67.365	3	0.00080858	36745	160513_QHF_FH_JSI11Kac_6	64.65	52.674			0.2099	0.20645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2099	0.20645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25654000	23402000	2252600	0	0	0	0	0	0	25654000	23402000	2252600	0	0	0	12551	2366	11903	76946	104066	104066	2436		1	
ELLQHVER	0	Unmodified	1022.5509	0.55089316	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		17.916	17.916	2	0.0036491	14936	160511_QHF_FH_JSI11i_3	71.379	21.253			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12552	4747	11904	76947	104067	104067			1	
ELLQSFDSALQSVK	1	Unmodified	1563.8144	0.81443765	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	85.084	84.54	2	7.7804E-15	72957	160511_QHF_FH_JSI12i_2	190.36	172.92			0.94836	0.92218	11.641	7	0	Median	1.0684	0.8897	NaN	1	0	Median	0.71314	0.8508	5.1305	2	0	Median	0.99323	0.98591	9.451	2	0	Median	0.97486	1.0684	10.413	2	0	Median	354850000	186580000	168270000	63325000	22848000	40477000	85866000	48217000	37649000	118090000	70106000	47980000	87573000	45407000	42166000	12553	1685	11905	76948;76949;76950;76951;76952;76953;76954;76955	104068;104069;104070;104071;104072;104073;104074;104075;104076;104077;104078	104070			11	
ELLQTKLK	2	Acetyl (K)	1013.6121	0.61209643	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		55.36	44.6	2	0.0064629	25758	160513_QHF_FH_JSI11Kac_4	82.426	20.463			0.68109	0.73871	59.205	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94097	1.1228	NaN	1	0	Median	0.49298	0.48603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53349000	34718000	18631000	0	0	0	20674000	12450000	8223700	32675000	22268000	10407000	0	0	0	12554	707	11906	76956;76957	104079	104079	349		1	
ELLQTPNFR	0	Unmodified	1116.5928	0.59275797	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	54.281	53.334	2	0.0056115	47031	160511_QHF_FH_JSI10i_2	56.81	15.781			0.95099	1.0121	7.9618	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9153	0.95672	NaN	1	0	Median	0.98807	1.0707	NaN	1	0	Median	117670000	67747000	49922000	0	0	0	0	0	0	78050000	47640000	30409000	39619000	20107000	19512000	12555	3513	11907	76958;76959;76960	104080;104081	104081			2	
ELLSGPNR	0	Unmodified	884.47158	0.4715802	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.24	2	3	3				3	4		4	4	3	4	23.727	19.113	2	1.1213E-09	16233	160511_QHF_FH_JSI12i_2	158.12	95.4			0.92631	0.98215	12.779	15	0	Median	1.2308	1.0363	8.1167	4	0	Median	0.85007	1.0139	12.37	4	0	Median	1.0415	1.0222	19.018	3	0	Median	0.87864	0.94415	11.187	4	0	Median	2148900000	1087300000	1061600000	633910000	291160000	342750000	506250000	267290000	238960000	236060000	124290000	111770000	772630000	404510000	368120000	12556	1460	11908	76961;76962;76963;76964;76965;76966;76967;76968;76969;76970;76971;76972;76973;76974;76975	104082;104083;104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095;104096;104097;104098;104099;104100	104084			19	
ELLSNVDEGIYQLEK	1	Unmodified	1748.8832	0.88324549	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	81.078	80.663	2;3	1.2381E-05	73196	160511_QHF_FH_JSI10i_1	118.21	110.75			1.2136	1.2662	32.861	7	2	Median	1.7558	1.4215	NaN	1	0	Median	1.0818	1.2323	26.902	2	1	Median	0.99551	0.96202	66.492	2	1	Median	1.1239	1.1608	12.287	2	0	Median	211350000	89869000	121480000	20701000	6746400	13955000	57616000	18285000	39331000	72224000	35201000	37022000	60808000	29637000	31171000	12557	3915	11909	76976;76977;76978;76979;76980;76981;76982	104101;104102;104103;104104;104105;104106;104107;104108;104109;104110	104108			10	
ELLSNWYHFLVTR	0	Unmodified	1676.8675	0.86747627	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	1	4	3	2	92.097	86.034	2;3	1.1145E-20	44671	160513_QHF_FH_JSI9Kac_6	154.65	139.66			0.83518	0.85925	22.343	8	2	Median	0.9956	0.85177	NaN	1	0	Median	0.72928	0.86679	35.095	3	1	Plateau	0.89758	0.84779	5.2451	2	0	Median	0.84293	0.89562	3.6136	2	1	Median	3491400000	2020400000	1471000000	523450000	290180000	233280000	2028100000	1197700000	830380000	543390000	312520000	230870000	396510000	220000000	176510000	12558	4487	11910	76983;76984;76985;76986;76987;76988;76989;76990;76991;76992	104111;104112;104113;104114;104115;104116;104117;104118;104119;104120;104121;104122;104123;104124	104119			14	
ELLSPGVK	1	Unmodified	841.49092	0.49091866	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.575	31.187	2	0.017199	26465	160511_QHF_FH_JSI11i_2	47.082	18.975			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12559	2567	11911	76993	104125	104125			1	
ELLTEFGYK	1	Unmodified	1098.5597	0.55972651	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		3	5	5	4	65.679	61.472	2	1.2638E-16	52954	160511_QHF_FH_JSI12i_2	178.83	144.01			0.89845	0.94215	22.415	17	3	Median	1.0028	0.84831	25.902	3	0	Median	0.68789	0.8541	16.839	5	1	Median	0.97025	0.94244	23.629	5	2	Median	0.90735	1.0034	18.956	4	0	Median	2331200000	1188000000	1143100000	411790000	203350000	208440000	556560000	287230000	269330000	760860000	377870000	382990000	601960000	319590000	282370000	12560	1658	11912	76994;76995;76996;76997;76998;76999;77000;77001;77002;77003;77004;77005;77006;77007;77008;77009;77010	104126;104127;104128;104129;104130;104131;104132;104133;104134;104135;104136;104137;104138;104139;104140;104141;104142;104143;104144;104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155;104156;104157;104158;104159;104160	104135			35	
ELLTLDEK	1	Unmodified	959.51753	0.51752734	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.84	4	3				3		1		3	4	3	1	48.842	45.481	2	1.1833E-10	40470	160511_QHF_FH_JSI10i_1	168.23	39.668			0.99051	0.95859	26.611	10	2	Median	1.1972	0.99165	4.4833	2	0	Median	0.85236	1.0347	43.165	4	1	Median	0.97281	0.95648	11.478	3	1	Median	0.77289	0.81765	NaN	1	0	Median	11718000000	5454400000	6264000000	2543200000	1096700000	1446500000	3350000000	1562600000	1787400000	2963300000	1307100000	1656200000	2861900000	1488000000	1374000000	12561	1593	11913	77011;77012;77013;77014;77015;77016;77017;77018;77019;77020;77021	104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177;104178;104179;104180;104181;104182	104171			22	
ELLTLDEKDPR	1	Unmodified	1327.6983	0.69834526	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		3								1			2	42.751	41.375	2	0.0060708	35383	160511_QHF_FH_JSI12i_2	89.08	52.684			0.48078	0.53324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48078	0.53324	NaN	1	1	Median	20183000	13478000	6704300	0	0	0	0	0	0	0	0	0	20183000	13478000	6704300	12562	1593	11914	77022;77023;77024	104183;104184;104185	104183			3	
ELLTLIR	0	Unmodified	856.5382	0.53820321	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	63.696	62.791	2	0.010159	54678	160511_QHF_FH_JSI11i_2	76.035	6.6512			0.75388	0.83295	15.572	4	0	Linear	1.3061	1.1095	NaN	1	0	Median	0.90105	1.106	NaN	1	0	Median	0.79667	0.79613	NaN	1	0	Median	0.89628	0.99125	NaN	1	0	Median	280930000	139370000	141560000	52079000	22359000	29720000	66169000	33430000	32739000	88229000	51277000	36952000	74448000	32301000	42147000	12563	2624	11915	77025;77026;77027;77028	104186	104186			1	
ELLTRELPSFLGK	1	Unmodified	1501.8504	0.85042922	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			79.769	78.409	3	0.00010548	64443	160511_QHF_FH_JSI9i_3	98.592	77.735			2.1358	2.0947	348.91	2	2	Median	29.645	24.694	NaN	1	1	Median	0.15387	0.17769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144030000	63034000	81000000	73070000	2197700	70872000	70964000	60836000	10128000	0	0	0	0	0	0	12564	1278	11916	77029;77030	104187;104188;104189	104189			3	
ELLTSFGPLK	1	Unmodified	1103.6227	0.62266112	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.09	3	4	5				1	4	1	5	5	4	4	75.247	71.275	2	4.1727E-14	62772	160511_QHF_FH_JSI12i_2	160.88	135.14			0.9947	0.97174	24.559	18	5	Median	1.0642	0.91475	35.173	5	2	Median	0.86286	0.99911	29.174	5	2	Median	1.0771	1.05	14.028	4	1	Median	0.9737	1.0342	17.831	4	0	Median	2790100000	1448500000	1341600000	481940000	228610000	253330000	698530000	376250000	322280000	990630000	522790000	467840000	619000000	320850000	298150000	12565	1274	11917	77031;77032;77033;77034;77035;77036;77037;77038;77039;77040;77041;77042;77043;77044;77045;77046;77047;77048	104190;104191;104192;104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213;104214;104215;104216	104195			27	
ELLTTMGDR	0	Unmodified	1034.5066	0.50664508	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	36.502	35.894	2	0.00056389	32221	160511_QHF_FH_JSI11i_1	78.334	42.454			1.0371	1.005	15.079	4	1	Median	1.0486	0.86896	NaN	1	0	Median	1.0693	1.2522	NaN	1	0	Median	1.0257	1.0116	NaN	1	0	Median	0.97431	0.99843	NaN	1	1	Median	538130000	243280000	294860000	67093000	25544000	41549000	195020000	93941000	101080000	178500000	80873000	97623000	97522000	42918000	54604000	12566	223;1151	11918	77049;77050;77051;77052;77053	104217;104218;104219;104220	104217			4	
ELLTTMGDRFTDEEVDELYR	0	Unmodified	2431.1213	0.12132029	223;1151	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							2	4	6	2	85.853	85.423	3	3.142E-15	75881	160511_QHF_FH_JSI11i_3	128.32	108.5			1.0413	1.0882	25.596	14	5	Median	1.4407	1.237	10.003	2	0	Median	0.92991	1.1517	37.479	4	2	Median	1.2024	1.201	24.855	6	3	Median	0.95988	0.96751	4.9002	2	0	Median	854490000	418070000	436420000	59000000	25475000	33525000	188330000	87808000	100520000	374360000	186710000	187650000	232800000	118080000	114720000	12567	223;1151	11919	77054;77055;77056;77057;77058;77059;77060;77061;77062;77063;77064;77065;77066;77067	104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232	104223			11	
ELLTVENQK	1	Unmodified	1072.5764	0.57643921	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.385	30.105	2	0.010365	26781	160511_QHF_FH_JSI10i_1	59.35	29.183			0.98893	1.0576	21.634	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76769	0.90758	NaN	1	1	Median	1.2739	1.2324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	260060000	132480000	127580000	0	0	0	112690000	60368000	52323000	147370000	72114000	75253000	0	0	0	12568	1360	11920	77068;77069	104233;104234	104234			2	
ELLTVGQEHWK	1	Unmodified	1338.6932	0.6932003	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		48.959	48.114	3	0.018658	42473	160511_QHF_FH_JSI10i_2	24.229	18.745			0.59441	0.72686	45.383	3	1	Median	1.6032	1.373	NaN	1	0	Median	0.59441	0.72686	NaN	1	0	Median	0.57326	0.57016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110390000	60290000	50105000	20657000	8940700	11716000	38956000	22387000	16569000	50782000	28962000	21820000	0	0	0	12569	5685	11921	77070;77071;77072	104235;104236	104236			2	
ELLVPLTSSMYVPGK	1	Unmodified	1632.8797	0.87968044	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	91.408	90.938	2;3	1.4225E-06	82837	160511_QHF_FH_JSI12i_1	133.07	116.04			0.94278	0.95384	28.064	16	6	Median	1.1626	0.95442	22.084	4	0	Median	0.81034	0.95384	43.277	4	2	Median	0.90457	0.88244	27.085	4	2	Median	1.0112	1.0822	20.655	4	2	Median	1070700000	561330000	509350000	179770000	82634000	97141000	322460000	174680000	147780000	328700000	173090000	155610000	239760000	130930000	108820000	12570	4274	11922	77073;77074;77075;77076;77077;77078;77079;77080;77081;77082;77083;77084;77085;77086;77087;77088	104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251;104252;104253;104254;104255;104256;104257;104258;104259;104260;104261	104245			25	
ELLYGGTSPTAETILK	1	Unmodified	1691.8982	0.89816728	729	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	73.798	73.31	2	0.00036581	66106	160511_QHF_FH_JSI10i_1	70.488	35.601			1.37	1.3179	32.148	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.37	1.3179	NaN	1	1	Median	1.1557	1.1779	44.531	2	2	Median	135510000	75482000	60024000	0	0	0	0	0	0	11989000	3663900	8325100	123520000	71818000	51699000	12571	729	11923	77089;77090;77091;77092;77093	104262;104263;104264;104265;104266	104265			5	
ELMFQVQK	1	Oxidation (M)	1037.5216	0.52156686	5857				yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	13.4	0.904					1	3	2	1		1	3		3	85.053	75.84	2	0.020316	37477	160513_QHF_FH_JSI12Kac_3	52.683	18.945	+		0.89085	0.95935	16.542	7	0	Median	1.2722	1.0762	NaN	1	0	Median	0.74778	0.88639	3.3277	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0246	1.1063	18.359	3	0	Plateau	653410000	356410000	297000000	7696500	3198200	4498400	359280000	211540000	147730000	0	0	0	286430000	141670000	144770000	12572	5857	11924	77094;77095;77096;77097;77098;77099;77100	104267;104268;104269;104270;104271;104272	104269		2766	6	
ELMGFSK	1	Unmodified	810.39458	0.39457544	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	39.279	38.45	2	0.013252	33740	160511_QHF_FH_JSI10i_2	58.917	12.547			1.3587	1.3151	40.515	4	3	Median	1.4512	1.2206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1153	1.1227	67.552	2	2	Median	1.2721	1.4169	NaN	1	0	Median	423910000	203830000	220070000	69989000	31543000	38446000	0	0	0	247390000	121770000	125610000	106530000	50518000	56012000	12573	4989	11925	77101;77102;77103;77104;77105	104273;104274;104275;104276;104277;104278	104278			6	
ELMHQKAEK	2	Acetyl (K)	1154.5754	0.57539335	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		18.27	8.8373	3	0.0077416	7359	160513_QHF_FH_JSI11Kac_5	57.347	48.393			0.040649	0.039537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.040649	0.039537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3344400	3121100	223300	0	0	0	0	0	0	3344400	3121100	223300	0	0	0	12574	615	11926	77106	104279	104279	315		1	
ELMNLDFHEK	1	Unmodified	1274.5965	0.59652272	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		5								1	1	2	1	53.531	52.652	2;3	0.0029401	45429	160511_QHF_FH_JSI11i_2	38.402	33.249			1.0424	1.0604	18.337	5	2	Median	1.1324	0.99676	NaN	1	0	Median	0.88477	1.077	NaN	1	0	Median	0.95514	0.97391	12.035	2	1	Median	1.2713	1.4632	NaN	1	1	Median	253610000	129860000	123750000	30487000	14182000	16305000	51179000	30731000	20448000	117690000	60815000	56880000	54254000	24137000	30117000	12575	3536	11927	77107;77108;77109;77110;77111	104280;104281;104282;104283	104282			4	
ELMNLTGTIPVPYR	0	Unmodified	1602.844	0.84396364	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.219	87.598	2	2.4392E-21	75619	160511_QHF_FH_JSI12i_2	173.72	151.49			0.87107	0.91173	9.5509	4	1	Median	0.92152	0.80301	NaN	1	1	Median	0.79482	0.96622	NaN	1	0	Median	0.87976	0.86031	NaN	1	0	Median	0.86247	0.98023	NaN	1	0	Median	152860000	80129000	72733000	31619000	15191000	16428000	36898000	19488000	17410000	49395000	26468000	22927000	34951000	18982000	15969000	12576	4319	11928	77112;77113;77114;77115	104284;104285;104286;104287;104288;104289;104290	104285			7	
ELMQVVLAR	0	Unmodified	1057.5954	0.59540051	1972	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.37		4	1					4		2	2	3	2	65.605	59.807	2	2.0167E-05	52956	160511_QHF_FH_JSI10i_2	106.91	83.868			0.85351	0.90508	18.445	8	0	Median	1.0459	0.88315	11.574	2	0	Median	0.81108	0.97861	2.5824	2	0	Median	0.85351	0.84505	1.6007	2	0	Median	0.88854	0.97203	43.864	2	0	Median	486600000	235930000	250670000	100270000	46625000	53647000	130230000	60843000	69390000	158070000	66940000	91126000	98029000	61523000	36506000	12577	1972	11929	77116;77117;77118;77119;77120;77121;77122;77123;77124	104291;104292;104293;104294;104295;104296;104297;104298;104299;104300;104301;104302;104303	104301			13	
ELMQWYK	1	Unmodified	996.47389	0.47388839	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	54.08	53.141	2	0.0075894	45465	160511_QHF_FH_JSI12i_2	86.866	58.759			1.3601	1.4528	9.493	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2182	1.5146	NaN	1	0	Median	1.4246	1.4528	NaN	1	0	Median	1.1035	1.2635	NaN	1	0	Median	502250000	249190000	253060000	0	0	0	176170000	90504000	85664000	189910000	76462000	113450000	136170000	82227000	53943000	12578	1793	11930	77125;77126;77127	104304;104305;104306;104307;104308	104305			5	
ELMQWYKDQK	2	Acetyl (K)	1409.6649	0.66493664	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		69.526	58.663	2	0.010062	31552	160513_QHF_FH_JSI11Kac_5	71.349	57.142			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12579	1793	11931	77128	104309	104309	1809		1	
ELNARPMEVFMCSVLK	1	Unmodified	1922.9416	0.94164554	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		98.811	98.687	3	1.9931E-05	87258	160511_QHF_FH_JSI11i_3	82.248	67.788			0.82307	0.7312	6.9568	2	0	Median	0.83672	0.69611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80964	0.76807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143700000	107300000	36405000	12932000	5906500	7025000	0	0	0	130770000	101390000	29380000	0	0	0	12580	4941	11932	77129;77130	104310;104311;104312;104313	104310			4	
ELNEDVSADVEER	0	Unmodified	1503.6689	0.66889562	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	40.461	39.249	2	5.4883E-05	34552	160511_QHF_FH_JSI9i_1	76.522	60.893			1.0896	0.87078	NaN	1	1	Median	1.0896	0.87078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41260000	21985000	19275000	41260000	21985000	19275000	0	0	0	0	0	0	0	0	0	12581	3736	11933	77131;77132;77133	104314;104315;104316	104316			3	
ELNEFREK	1	Unmodified	1063.5298	0.52982336	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	17.865	17.401	2;3	0.0022664	14428	160511_QHF_FH_JSI11i_3	57.708	38.73			1.2325	1.4777	69.063	5	3	Median	4.4369	3.8017	NaN	1	1	Median	0.93545	1.1327	37.594	2	1	Median	1.8204	1.6862	NaN	1	0	Median	0.6301	0.62726	NaN	1	1	Median	683050000	230230000	452820000	114290000	25196000	89093000	196610000	69374000	127230000	220460000	66173000	154290000	151690000	69485000	82209000	12582	5313	11934	77134;77135;77136;77137;77138	104317;104318;104319;104320;104321;104322;104323	104318			7	
ELNELVSAIEEHFFQPQK	1	Unmodified	2157.0742	0.074234161	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.91	101.92	3	9.6802E-24	88644	160511_QHF_FH_JSI12i_3	180.14	157.26			0.92344	0.9093	29.288	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76151	0.7392	NaN	1	0	Median	1.1198	1.1185	NaN	1	0	Median	1547100000	723780000	823290000	0	0	0	0	0	0	592570000	323580000	268990000	954490000	400190000	554300000	12583	4080	11935	77139;77140	104324;104325;104326;104327	104327			4	
ELNFSSTEQMEK	1	Unmodified	1441.6395	0.63950975	393	O43924	PDE6D	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.198	45.659	2	0.00028573	41111	160511_QHF_FH_JSI11i_1	75.78	40.366			0.79774	0.88502	4.336	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78432	0.91258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81138	0.8583	NaN	1	0	Median	76036000	42955000	33081000	0	0	0	40020000	25846000	14174000	0	0	0	36016000	17109000	18907000	12584	393	11936	77141;77142;77143	104328;104329;104330	104328			2	
ELNGKQIYVGR	1	Acetyl (K)	1317.7041	0.70409934	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	1	0	0	1			By MS/MS		14	0							1					1		55.821	44.915	2	0.0047014	25983	160513_QHF_FH_JSI11Kac_4	84.213	54.739			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12585	1009;4688	11937	77144	104331	104331	807		1	
ELNGTAPEEK	1	Unmodified	1086.5193	0.51931826	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	14.753	12.424	2	2.6449E-10	10664	160511_QHF_FH_JSI12i_1	140.45	70.448			1.1313	1.032	52.15	7	4	Median	1.1313	0.93637	NaN	1	0	Median	0.88988	1.032	NaN	1	0	Median	0.84438	0.81473	68.141	3	3	Plateau	0.66719	0.71453	72.867	2	1	Median	755240000	402650000	352580000	167440000	86544000	80898000	150930000	80985000	69940000	297220000	161560000	135660000	139650000	73564000	66089000	12586	5495	11938	77145;77146;77147;77148;77149;77150;77151	104332;104333;104334;104335;104336;104337;104338;104339;104340;104341	104334			10	
ELNHMLSDTGNRK	1	Oxidation (M)	1529.7256	0.72563941	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		19.556	18.97	3	0.00071552	15604	160511_QHF_FH_JSI10i_3	57.434	46.715			0.76423	0.79244	38.462	2	1	Median	NaN	NaN	NaN	0	0	Median	0.51389	0.60375	NaN	1	0	Median	1.1365	1.0401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54794000	27426000	27369000	0	0	0	26827000	16036000	10791000	27967000	11390000	16578000	0	0	0	12587	4073	11939	77152;77153	104342;104343	104343		2384	2	
ELNHMLSDTGNRK	1	Unmodified	1513.7307	0.73072479	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			20.303	19.159	3	0.0001767	15314	160511_QHF_FH_JSI9i_3	78.814	58.387			0.69078	0.6052	68.367	3	3	Median	1.2846	1.046	85.744	2	2	Median	0.52096	0.6052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	237760000	122750000	115010000	118290000	41202000	77092000	119470000	81551000	37916000	0	0	0	0	0	0	12588	4073	11939	77154;77155;77156;77157	104344;104345;104346;104347	104345			4	
ELNHPNIVK	1	Unmodified	1062.5822	0.58219329	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	22.108	21.274	3	1.2056E-05	18327	160511_QHF_FH_JSI10i_2	98.033	65.193			0.84286	0.9363	34.869	4	0	Median	0.61408	0.53869	NaN	1	0	Median	0.79456	0.9659	NaN	1	0	Median	0.8941	0.9076	NaN	1	0	Median	1.1105	1.2343	NaN	1	0	Median	650740000	309660000	341080000	103700000	49010000	54686000	195440000	100640000	94803000	262380000	127830000	134550000	89229000	32192000	57038000	12589	1252	11940	77158;77159;77160;77161	104348;104349;104350;104351;104352;104353;104354	104354			7	
ELNITAAK	1	Unmodified	858.48108	0.48108226	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	3.89	7	8				1	1			3	4	5	5	29.01	27.806	2	9.602E-05	24240	160511_QHF_FH_JSI9i_1	130.27	57.233			1.0661	1.07	122.69	16	14	Median	1.205	1.0116	105.08	3	2	Median	1.367	1.6595	112.9	4	4	Median	0.82353	0.82538	121.45	4	4	Median	0.52873	0.59313	154.1	5	4	Median	15701000000	6537000000	9164300000	3149700000	1159800000	1989900000	5192600000	2020800000	3171800000	4272200000	1750600000	2521600000	3086800000	1605800000	1480900000	12590	1979	11941	77162;77163;77164;77165;77166;77167;77168;77169;77170;77171;77172;77173;77174;77175;77176;77177;77178	104355;104356;104357;104358;104359;104360;104361;104362;104363;104364;104365;104366;104367;104368;104369;104370;104371;104372;104373;104374;104375;104376	104369			22	
ELNKILEGR	1	Acetyl (K)	1112.619	0.61897272	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	1	2	58.821	48.075	2	0.0011159	26934	160513_QHF_FH_JSI12Kac_4	90.108	27.285			3.1254	3.3724	178.62	4	4	Median	NaN	NaN	NaN	0	0	Median	4.4728	5.3241	NaN	1	1	Median	2.1839	2.1916	NaN	1	1	Median	0.72559	0.79398	265.49	2	2	Median	33112000	16117000	16994000	0	0	0	7628200	2110200	5518000	4901400	1872200	3029200	20582000	12135000	8447200	12591	970	11942	77179;77180;77181;77182;77183	104377;104378;104379;104380;104381	104380	740		5	
ELNLQDFSHLDHR	0	Unmodified	1622.7801	0.78011783	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	59.71	59.576	3;4	4.5941E-05	51277	160511_QHF_FH_JSI12i_3	69.714	63.682			1.0493	1.0426	25.741	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3252	1.2507	NaN	1	0	Median	0.83081	0.86908	NaN	1	0	Median	75485000	36139000	39346000	0	0	0	0	0	0	37558000	16021000	21537000	37926000	20117000	17809000	12592	3003	11943	77184;77185;77186	104382;104383;104384;104385;104386	104385			5	
ELNMGQR	0	Unmodified	846.40179	0.40178608	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	14.053	13.521	2	0.0019752	11074	160511_QHF_FH_JSI9i_2	114.54	55.879			0.89041	1.0914	28.635	5	1	Median	1.3999	1.1878	NaN	1	0	Median	0.73591	0.87189	31.762	2	0	Median	0.78541	0.80322	NaN	1	1	Median	1.2638	1.3973	NaN	1	0	Median	1098600000	558250000	540390000	200370000	86775000	113590000	485330000	263570000	221770000	193770000	109320000	84456000	219170000	98587000	120580000	12593	997	11944	77187;77188;77189;77190;77191;77192	104387;104388;104389;104390;104391;104392	104390			6	
ELNMIIMLPDETTDLR	0	Unmodified	1902.9431	0.94308533	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	101.26	101.17	2	4.4831E-10	91742	160511_QHF_FH_JSI12i_1	142.85	120.27			0.76135	0.76534	4.5014	4	1	Median	NaN	NaN	NaN	0	0	Median	0.64601	0.75892	NaN	1	0	Median	0.79228	0.76609	7.7047	2	1	Median	0.75671	0.77181	NaN	1	0	Median	538510000	295700000	242810000	0	0	0	141590000	71509000	70079000	211070000	115530000	95533000	185850000	108650000	77199000	12594	1425	11945	77193;77194;77195;77196	104393;104394;104395	104393			3	
ELNNTCEPVVTQPK	1	Unmodified	1627.7876	0.78757097	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	34.135	33.784	2	1.3079E-14	30510	160511_QHF_FH_JSI12i_1	158.42	130.99			1.3154	1.3574	41.218	5	4	Median	NaN	NaN	NaN	0	0	Median	1.0254	1.1793	46.116	2	2	Median	1.0113	0.98763	62.72	2	2	Median	1.3154	1.3574	NaN	1	0	Median	199980000	96912000	103070000	0	0	0	69009000	39027000	29982000	84205000	37102000	47104000	46763000	20782000	25980000	12595	3852	11946	77197;77198;77199;77200;77201;77202	104396;104397;104398;104399;104400;104401;104402	104398			7	
ELNNYEIR	0	Unmodified	1049.5142	0.5141733	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				22.461	21.191	3	0.025534	17030	160511_QHF_FH_JSI9i_3	30.167	6.2114			8.3818	6.7893	NaN	1	1	Median	8.3818	6.7893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65011000	7237000	57774000	65011000	7237000	57774000	0	0	0	0	0	0	0	0	0	12596	4	11947	77203	104403	104403			1	
ELNPEEGEMVEEK	1	Unmodified	1531.6712	0.67120381	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	40.718	40.081	2	7.3207E-10	35489	160511_QHF_FH_JSI9i_1	113.22	90.583			1.0348	1.0432	24.849	4	1	Median	1.6004	1.3354	NaN	1	1	Median	0.66711	0.76082	NaN	1	0	Median	1.1989	1.1687	NaN	1	0	Median	0.89318	0.93125	NaN	1	0	Median	140540000	69916000	70627000	23507000	6842800	16665000	35178000	22421000	12757000	43369000	20090000	23279000	38489000	20563000	17927000	12597	5458	11948	77204;77205;77206;77207;77208	104404;104405;104406;104407;104408;104409;104410;104411	104411			8	
ELNQVMEQLGDAR	0	Unmodified	1501.7195	0.7194914	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	2	3	61.881	61.212	2	1.3449E-05	55629	160511_QHF_FH_JSI12i_1	119.39	102.75			1.5581	1.4359	72.515	8	7	Median	1.2192	1.0157	NaN	1	0	Median	1.0456	1.2304	107.84	2	2	Median	1.1408	1.1176	116.47	2	2	Median	1.9912	2.0299	69.154	3	3	Median	774960000	370680000	404290000	97659000	50475000	47184000	201830000	105590000	96240000	243050000	116920000	126130000	232420000	97691000	134730000	12598	2560	11949	77209;77210;77211;77212;77213;77214;77215;77216	104412;104413;104414;104415;104416;104417;104418;104419;104420	104415			9	
ELNRENEFNK	1	Unmodified	1291.6157	0.61567826	5785				yes	yes	0	0	0	1	By MS/MS	By matching		By matching	1	0	4									2	1		1	42.295	41.43	2	0.013628	36717	160511_QHF_FH_JSI9i_1	62.546	3.629	+		0.78311	0.90775	4.1653	4	0	Linear	1.1195	0.90421	0	2	0	Median	0.77165	0.91131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93027	0.985	NaN	1	0	Median	801000000	442410000	358590000	360040000	173850000	186180000	231570000	143410000	88164000	0	0	0	209390000	125150000	84239000	12599	5785	11950	77217;77218;77219;77220	104421	104421			1	
ELNSPILFAFSHLESSDGEAGRDPPAK	1	Unmodified	2883.4039	0.40390115	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		96.099	95.885	4	0.036801	84807	160511_QHF_FH_JSI11i_3	19.387	16.345			1.0364	1.0894	3.4005	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95074	1.1159	NaN	1	1	Median	1.1299	1.0635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75661000	35500000	40162000	0	0	0	17667000	6018000	11649000	57995000	29482000	28513000	0	0	0	12600	1637	11951	77221;77222	104422;104423	104422			2	
ELNTSSK	1	Unmodified	777.38685	0.38684752	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.3608	5.2557	2	0.027638	3057	160511_QHF_FH_JSI11i_1	55.902	27.003			1.3449	1.306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3449	1.306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146730000	66039000	80686000	0	0	0	0	0	0	146730000	66039000	80686000	0	0	0	12601	5011	11952	77223	104424	104424			1	
ELNVMFIETSAK	1	Unmodified	1380.6959	0.69590241	1175	P20340	RAB6A	Ras-related protein Rab-6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.866	3	2	3							1	1	3	3	76.511	75.708	2	2.6261E-07	66399	160511_QHF_FH_JSI11i_2	130.1	101.89			0.95451	1.026	16.558	5	3	Median	0.83874	0.71412	NaN	1	1	Median	0.87163	1.026	NaN	1	1	Median	1.0325	1.0287	NaN	1	0	Median	0.95506	1.0384	2.4361	2	1	Median	333270000	164770000	168490000	9822800	4619600	5203200	113690000	57143000	56544000	87997000	40431000	47566000	121760000	62579000	59180000	12602	1175	11953	77224;77225;77226;77227;77228;77229;77230;77231	104425;104426;104427;104428;104429;104430;104431;104432	104431			8	
ELNWDDYKK	2	Unmodified	1209.5666	0.5666028	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	38.856	38.676	2;3	0.00079514	33033	160511_QHF_FH_JSI12i_3	90.629	72.317			1.011	1.0313	15.297	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.011	1.0313	15.297	2	2	Median	205430000	115360000	90076000	0	0	0	0	0	0	0	0	0	205430000	115360000	90076000	12603	1558	11954	77232;77233	104433;104434	104434			2	
ELNYFAK	1	Unmodified	883.44397	0.44396847	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	6.02	9	8	8				3	6	2	8	8	9	11	41.886	37.991	1;2	0.0012483	31018	160511_QHF_FH_JSI9i_3	110.61	43.618			0.57759	0.59536	86.376	33	31	Median	0.55866	0.46943	96.619	7	7	Median	0.38739	0.46471	100.14	7	7	Median	0.62855	0.61785	84.712	8	6	Median	0.6618	0.72185	83.616	11	11	Median	49792000000	24332000000	25460000000	9050000000	3868600000	5181300000	14308000000	7381600000	6926500000	15372000000	7357900000	8014400000	11062000000	5724000000	5337800000	12604	775	11955	77234;77235;77236;77237;77238;77239;77240;77241;77242;77243;77244;77245;77246;77247;77248;77249;77250;77251;77252;77253;77254;77255;77256;77257;77258;77259;77260;77261;77262;77263;77264;77265;77266;77267;77268;77269	104435;104436;104437;104438;104439;104440;104441;104442;104443;104444;104445;104446;104447;104448;104449;104450;104451;104452;104453;104454;104455;104456;104457;104458;104459;104460;104461;104462;104463;104464;104465;104466;104467;104468;104469;104470;104471;104472;104473;104474;104475;104476;104477;104478;104479;104480	104456			46	
ELNYFAKALESPERPFLAILGGAK	2	Acetyl (K)	2675.4323	0.43228816	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		97.307	87.901	3	2.6663E-51	50150	160513_QHF_FH_JSI11Kac_6	175.47	152.29			0.29207	0.27306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29207	0.27306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	189830000	141800000	48023000	0	0	0	0	0	0	189830000	141800000	48023000	0	0	0	12605	775	11956	77270	104481	104481	393		1	
ELNYNLDTHTSTGR	0	Unmodified	1619.754	0.75396265	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		33.724	32.927	3	0.0002121	28102	160511_QHF_FH_JSI11i_2	67.648	61.988			1.1472	1.0044	16.168	3	0	Plateau	0.94671	0.82346	NaN	1	0	Median	0.81406	1.0044	NaN	1	0	Median	1.1472	1.1343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109710000	59544000	50162000	31882000	18127000	13755000	31081000	16309000	14772000	46743000	25108000	21635000	0	0	0	12606	4986	11957	77271;77272;77273	104482;104483	104482			2	
ELPAAEPVLSPLEGTK	1	Unmodified	1649.8876	0.88760259	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	76.27	75.708	2;3	5.608E-06	67208	160511_QHF_FH_JSI9i_1	124.12	72.843			1.0552	1.0298	11.726	6	0	Median	1.2678	1.0403	24.254	2	0	Median	0.87485	1.0359	NaN	1	0	Median	1.0702	1.0237	NaN	1	0	Median	0.98896	1.0016	9.1139	2	0	Median	475850000	230710000	245140000	136660000	55643000	81019000	95749000	51969000	43780000	105900000	52799000	53098000	137550000	70301000	67245000	12607	4538	11958	77274;77275;77276;77277;77278;77279	104484;104485;104486;104487;104488;104489;104490;104491;104492	104492			9	
ELPAAGK	1	Unmodified	684.38064	0.38063993	3776	Q8WV93	LACE1	Lactation elevated protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.6	5.82	1	1				2	1			1	1	1	2	12.136	7.4888	2	0.015049	7285	160511_QHF_FH_JSI9i_1	65.263	24.342			0.91545	1.0071	16.374	5	0	Median	1.642	1.3367	NaN	1	0	Median	0.70601	0.88577	NaN	1	0	Median	0.91545	0.90627	NaN	1	0	Median	0.91776	1.0078	0.096817	2	0	Median	1569900000	656220000	913660000	1393700000	569290000	824390000	104790000	48292000	56493000	33579000	17245000	16334000	37846000	21398000	16448000	12608	3776	11959	77280;77281;77282;77283;77284	104493;104494;104495	104494			3	
ELPAAVAPAGPASLAR	0	Unmodified	1489.8253	0.8252771	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	6	6					3			1	5	4	5	64.784	62.1	2;3	6.6996E-05	53359	160511_QHF_FH_JSI12i_2	90.926	73.49			1.0147	1.0713	13.182	15	8	Median	1.2242	1.0713	NaN	1	1	Median	0.86889	1.0276	13.222	5	3	Median	1.3269	1.3038	14.62	4	2	Linear	1.0949	1.233	12.487	5	2	Median	1685600000	811820000	873760000	125450000	46102000	79350000	473000000	256510000	216490000	536980000	237350000	299640000	550140000	271860000	278280000	12609	677	11960	77285;77286;77287;77288;77289;77290;77291;77292;77293;77294;77295;77296;77297;77298;77299	104496;104497;104498;104499;104500;104501;104502;104503;104504;104505;104506;104507;104508;104509;104510	104498			14	
ELPADLAR	0	Unmodified	883.47633	0.47633123	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.5	4.8	4	1	2						1	1	1	4	2	56.971	55.382	2	0.020585	34094	160511_QHF_FH_JSI12i_1	45.68	13.21			1.8262	1.5633	312.57	7	3	Median	1.8262	1.5633	NaN	1	0	Median	0.92665	1.0833	NaN	1	0	Median	592.38	578.05	357.87	3	2	Plateau	15.699	15.921	384.96	2	1	Median	7199500000	112260000	7087200000	36936000	15936000	21000000	47660000	26588000	21072000	6195300000	46069000	6149200000	919600000	23666000	895930000	12610	3506	11961	77300;77301;77302;77303;77304;77305;77306;77307	104511;104512;104513;104514;104515	104512			5	
ELPAQKWWHTGALYR	1	Acetyl (K)	1896.9635	0.96350192	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	79.883	71.429	2;3	2.0348E-10	38906	160513_QHF_FH_JSI11Kac_6	172.99	139.76			0.065621	0.070631	238.82	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2622	1.5083	NaN	1	0	Median	0.014187	0.013638	NaN	1	1	Median	0.065621	0.070631	NaN	1	1	Median	265550000	195300000	70250000	0	0	0	122510000	55448000	67060000	125350000	123470000	1878300	17694000	16382000	1311800	12611	895	11962	77308;77309;77310;77311	104516;104517;104518;104519	104517	634		4	
ELPAWVSFPDVEK	1	Unmodified	1515.7609	0.76094551	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.29	0.452	5	2								2		2	3	95.874	95.457	2;3	0.0001947	86552	160511_QHF_FH_JSI11i_1	80.979	52.252			1.102	1.0518	46.785	5	2	Median	0.98787	0.805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5978	1.5402	53.936	2	1	Median	1.2225	1.2628	55.1	2	0	Median	125100000	57579000	67517000	18339000	7294700	11044000	0	0	0	55521000	24309000	31212000	51236000	25975000	25261000	12612	4399	11963	77312;77313;77314;77315;77316;77317;77318	104520;104521;104522;104523;104524;104525;104526;104527	104520			8	
ELPDLEDLMK	1	Unmodified	1201.59	0.59004036	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	3	1	2	93.094	92.711	2	0.00018817	84394	160511_QHF_FH_JSI12i_1	96.948	96.948			1.1516	1.0898	6.8743	4	0	Median	1.2693	1.0457	NaN	1	0	Median	0.85471	1.0106	NaN	1	0	Median	1.1995	1.1702	NaN	1	0	Median	1.1055	1.1359	NaN	1	0	Median	438790000	207860000	230930000	71280000	30093000	41187000	123420000	70129000	53288000	126600000	53745000	72855000	117490000	53894000	63597000	12613	4850	11964	77319;77320;77321;77322;77323;77324;77325	104528;104529;104530;104531;104532;104533;104534;104535;104536;104537	104532			10	
ELPDPQESIQR	0	Unmodified	1310.6466	0.64664404	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	42.749	42.094	2	0.00060833	38077	160511_QHF_FH_JSI11i_1	75.294	47.552		+	2.575	2.512	75.291	4	4	Median	3.0602	2.4923	NaN	1	1	Median	2.1668	2.532	NaN	1	1	Median	0.83229	0.8165	NaN	1	1	Median	4.7351	5.0349	NaN	1	1	Median	1550800000	246880000	1304000000	280930000	41901000	239030000	385800000	72410000	313390000	185620000	72414000	113200000	698500000	60152000	638350000	12614	66	11965	77326;77327;77328;77329;77330;77331	104538;104539;104540;104541;104542;104543;104544;104545	104540			8	
ELPDPSQRPLGEPSAGLGEYLK	1	Unmodified	2352.1961	0.19614021	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	76.726	75.997	3	3.2442E-13	66005	160511_QHF_FH_JSI12i_3	118.52	104.36			1.0263	1.0848	20.486	5	0	Median	1.2854	1.0896	NaN	1	0	Median	0.54471	0.68464	NaN	1	0	Median	1.0263	1.0364	NaN	1	0	Median	1.0046	1.0955	1.3872	2	0	Median	315270000	163090000	152180000	54794000	24966000	29827000	96693000	61224000	35469000	70375000	35514000	34861000	93405000	41381000	52024000	12615	4851	11966	77332;77333;77334;77335;77336	104546;104547;104548;104549;104550;104551;104552	104552			7	
ELPEQLQEHAIEDK	1	Unmodified	1677.821	0.82097959	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								1	3	3	3	47.84	47.106	2;3	1.2693E-06	40400	160511_QHF_FH_JSI12i_2	126.88	93.193			1.126	1.0767	16.575	9	2	Median	1.126	0.98686	NaN	1	0	Median	1.0056	1.2046	21.207	2	0	Median	1.2743	1.2245	11.091	3	0	Plateau	0.91775	1.0092	21.912	3	2	Median	1111500000	566790000	544710000	98977000	40518000	58459000	215010000	103710000	111300000	456090000	224160000	231930000	341420000	198400000	143020000	12616	2670	11967	77337;77338;77339;77340;77341;77342;77343;77344;77345;77346	104553;104554;104555;104556;104557;104558;104559;104560;104561;104562;104563;104564;104565;104566;104567	104556			15	
ELPESGIQLGTPR	0	Unmodified	1395.7358	0.73579339	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		56.948	56.542	2	3.7636E-05	50996	160511_QHF_FH_JSI10i_1	115.91	70.235			0.88118	0.94248	8.1698	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76714	0.88958	NaN	1	0	Median	1.0122	0.99853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231400000	128180000	103220000	0	0	0	102630000	61729000	40901000	128770000	66449000	62321000	0	0	0	12617	5320	11968	77347;77348	104568;104569;104570	104569			3	
ELPEYYELIR	0	Unmodified	1323.6711	0.67106787	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0			By MS/MS		1	0	2											2		59.436	59.101	2	0.016225	69847	160511_QHF_FH_JSI11i_1	50.473	20.806			0.86499	0.83067	66.009	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86499	0.83067	66.009	2	1	Median	NaN	NaN	NaN	0	0	Median	300450000	159390000	141060000	0	0	0	0	0	0	300450000	159390000	141060000	0	0	0	12618	1736;1737	11969	77349;77350	104571;104572	104572			2	
ELPFGDK	1	Unmodified	804.40177	0.4017693	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	1	2	3	41.444	39.368	2	0.0094456	35402	160511_QHF_FH_JSI10i_1	79.116	79.116			0.98204	1.0294	20.167	7	1	Median	0.82788	0.69362	NaN	1	1	Median	0.76945	0.90727	NaN	1	0	Median	0.89064	0.8842	23.433	2	0	Median	0.98204	1.0549	6.9271	3	0	Plateau	818440000	420290000	398150000	74377000	36325000	38052000	192830000	114430000	78402000	299000000	145520000	153490000	252230000	124020000	128210000	12619	543	11970	77351;77352;77353;77354;77355;77356;77357	104573;104574;104575;104576;104577;104578;104579;104580;104581;104582;104583;104584	104580			12	
ELPGFLQSGK	1	Unmodified	1074.571	0.5709599	1268	P25815	S100P	Protein S100-P	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.14	4	4	3				4	3		3	4	6	5	64.066	59.434	2	9.7684E-06	52368	160511_QHF_FH_JSI9i_2	105.1	86.326			0.96699	1.0341	29.783	18	2	Median	1.2243	1.0192	23.597	3	1	Median	0.89178	1.061	13.052	4	0	Median	1.0488	1.0341	39.338	6	1	Median	0.94881	1.0492	35.224	5	0	Median	7764200000	3905600000	3858600000	1329200000	651050000	678160000	1529900000	761000000	768860000	2773100000	1410200000	1363000000	2132000000	1083400000	1048600000	12620	1268	11971	77358;77359;77360;77361;77362;77363;77364;77365;77366;77367;77368;77369;77370;77371;77372;77373;77374;77375	104585;104586;104587;104588;104589;104590;104591;104592;104593;104594;104595;104596;104597;104598;104599;104600;104601;104602;104603;104604;104605;104606;104607;104608;104609;104610;104611;104612;104613;104614;104615;104616;104617;104618;104619	104605			35	
ELPGHTGYLSCCR	0	Unmodified	1548.6813	0.68133176	2032;4830	P62879;Q9HAV0	GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	3	1	33.72	33.309	2;3	3.0683E-05	28037	160511_QHF_FH_JSI12i_3	85.536	75.748			0.9145	0.92188	26.281	6	2	Median	NaN	NaN	NaN	0	0	Median	0.90451	1.0723	18.088	2	0	Median	0.86964	0.81714	20.448	3	2	Median	1.2097	1.2208	NaN	1	0	Median	359700000	199300000	160410000	0	0	0	90457000	49379000	41077000	189110000	113890000	75223000	80135000	36027000	44108000	12621	2032;4830	11972	77376;77377;77378;77379;77380;77381	104620;104621;104622;104623;104624;104625	104625			6	
ELPGQTLHWGPEATEAAGR	0	Unmodified	2018.981	0.98100248	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	60.704	60.092	3	2.5771E-05	51652	160511_QHF_FH_JSI12i_3	69.763	65.795			0.85326	0.76797	13.986	5	0	Median	0.8791	0.74935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86296	0.84665	13.794	2	0	Median	0.70586	0.73815	19.524	2	0	Median	509160000	276640000	232520000	66550000	33584000	32966000	0	0	0	215330000	110400000	104930000	227270000	132650000	94621000	12622	2506	11973	77382;77383;77384;77385;77386	104626;104627;104628	104628			3	
ELPGSTELTGSTNLITHYNLEQAYNK	1	Unmodified	2892.4141	0.41413149	7	A0JLT2	MED19	Mediator of RNA polymerase II transcription subunit 19	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	86.195	85.482	3	0.00094456	75229	160511_QHF_FH_JSI11i_2	37.228	22.465			1.002	0.90608	5.1067	3	2	Plateau	1.0367	0.90608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95244	0.89537	NaN	1	1	Median	0.86238	0.98342	NaN	1	1	Median	40105000	25935000	14170000	13466000	6247800	7217800	0	0	0	16616000	12714000	3901600	10024000	6972900	3050900	12623	7	11974	77387;77388;77389	104629;104630;104631	104631			3	
ELPPAAAIGATSLVAAPHSSSSSPSK	1	Unmodified	2432.2547	0.25471772	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	2	3	69.892	69.217	3	2.3563E-07	60686	160511_QHF_FH_JSI11i_2	64.27	52.419			0.94118	0.98007	10.168	7	2	Median	1.1409	0.97623	12.139	2	2	Median	0.89979	1.102	NaN	1	0	Median	0.93719	0.90057	11.963	2	0	Median	0.93956	0.996	6.6881	2	0	Median	265900000	127610000	138280000	74048000	31393000	42656000	34977000	19827000	15150000	86411000	42478000	43932000	70461000	33916000	36545000	12624	2591	11975	77390;77391;77392;77393;77394;77395;77396;77397	104632;104633;104634;104635;104636;104637;104638;104639;104640;104641;104642;104643;104644;104645;104646;104647	104640			16	
ELPPDQAEYCIAR	0	Unmodified	1560.7242	0.72424243	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.665	49.25	2	0.00045057	44206	160511_QHF_FH_JSI10i_1	69.979	61.025			0.95217	0.92913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95217	0.92913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43499000	21965000	21534000	0	0	0	0	0	0	43499000	21965000	21534000	0	0	0	12625	361;1021	11976	77398;77399;77400	104648;104649;104650	104650			3	
ELPPFWEQR	0	Unmodified	1200.5928	0.59275797	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.653	69.356	2	0.059596	59736	160511_QHF_FH_JSI12i_2	48.794	18.224			0.91562	0.9773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91562	0.9773	NaN	1	1	Median	40749000	19861000	20888000	0	0	0	0	0	0	0	0	0	40749000	19861000	20888000	12626	2540	11977	77401	104651	104651			1	
ELPPGVEELLNK	1	Unmodified	1336.7238	0.72383172	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	87.862	87.593	2	0.00070064	79494	160511_QHF_FH_JSI10i_1	80.037	48.615			0.56609	0.63152	40.227	4	4	Median	NaN	NaN	NaN	0	0	Median	0.72698	0.85537	48.158	2	2	Median	0.47723	0.46328	NaN	1	1	Median	0.62519	0.65541	NaN	1	1	Median	161280000	95040000	66240000	0	0	0	96785000	54119000	42666000	34901000	22058000	12844000	29593000	18863000	10730000	12627	2573	11978	77402;77403;77404;77405	104652;104653;104654;104655	104655			4	
ELPPPSEEIK	1	Unmodified	1137.5918	0.59175492	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.558	37.343	2	0.010084	33015	160511_QHF_FH_JSI9i_1	48.794	26.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12628	4076	11979	77406	104656	104656			1	
ELPQFATGENLPR	0	Unmodified	1470.7467	0.74669243	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	2	4	65.772	63.975	2;3	2.2071E-05	58373	160511_QHF_FH_JSI11i_1	120.77	110.22			0.95644	1.1642	29.045	10	2	Linear	1.3203	1.1103	19.824	2	1	Median	0.81899	0.97671	6.3132	2	0	Median	1.089	1.0853	6.0744	2	0	Median	1.2607	1.3546	34.638	4	1	Median	1302200000	633570000	668610000	257140000	112940000	144190000	337310000	207230000	130080000	366430000	181190000	185240000	341300000	132200000	209100000	12629	4575	11980	77407;77408;77409;77410;77411;77412;77413;77414;77415;77416	104657;104658;104659;104660;104661;104662;104663;104664;104665;104666;104667;104668	104657			11	
ELPQLVASVIESESEILHHEK	1	Unmodified	2386.238	0.23800503	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By matching		By MS/MS	2.5	0.5		1	1								1		1	101.56	101.54	4	2.0036E-13	88233	160511_QHF_FH_JSI12i_3	122.01	113.19			0.76227	0.84646	6.1697	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65909	0.81033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88162	0.88421	NaN	1	0	Median	277120000	152050000	125070000	0	0	0	48814000	26176000	22637000	0	0	0	228310000	125880000	102430000	12630	2947	11981	77417;77418	104669	104669			1	
ELPQVSFVK	1	Unmodified	1045.5808	0.5807963	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		2	5	4	4	67.338	62.562	2	4.4485E-06	56714	160511_QHF_FH_JSI10i_1	119.27	52.593			0.93658	0.94185	15.249	15	0	Median	1.1021	0.91677	2.9867	2	0	Median	0.77652	0.93513	8.1067	5	0	Median	1.0363	1.0322	10.545	4	0	Median	0.97141	1.0891	20.152	4	0	Median	1856900000	923460000	933430000	341510000	168820000	172690000	471600000	242970000	228630000	586970000	283940000	303030000	456810000	227730000	229080000	12631	595	11982	77419;77420;77421;77422;77423;77424;77425;77426;77427;77428;77429;77430;77431;77432;77433	104670;104671;104672;104673;104674;104675;104676;104677;104678;104679;104680;104681;104682;104683;104684;104685;104686;104687;104688;104689;104690;104691;104692;104693;104694;104695;104696	104682			27	
ELPRPVLEGQQSER	0	Unmodified	1636.8533	0.85328277	4472;2961	Q5TAP6;Q9BVJ6	UTP14C;UTP14A	U3 small nucleolar RNA-associated protein 14 homolog C;U3 small nucleolar RNA-associated protein 14 homolog A	no	no	0	0	0	1		By MS/MS			3	0			1								1			39.94	38.45	3	0.00094386	32022	160511_QHF_FH_JSI10i_3	57.679	37.298			0.61569	0.69858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61569	0.69858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23359000	11675000	11685000	0	0	0	23359000	11675000	11685000	0	0	0	0	0	0	12632	2961;4472	11983	77434	104697	104697			1	
ELPSEQQEQWEAFVSGPLAETNKK	2	Unmodified	2744.3293	0.32933923	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.146	88.035	3	2.2132E-05	76312	160511_QHF_FH_JSI12i_3	54.656	41.978			0.75837	0.80626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75837	0.80626	NaN	1	1	Median	20864000	13718000	7145500	0	0	0	0	0	0	0	0	0	20864000	13718000	7145500	12633	5460	11984	77435	104698	104698			1	
ELPSFLGK	1	Unmodified	889.49092	0.49091866	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.58	4	4	4				3	6	4	6	7	5	7	67.964	62.567	2	0.00024028	53741	160511_QHF_FH_JSI12i_2	117.17	76.223			1.0537	0.97467	39.687	24	1	Median	1.1375	0.98426	7.9024	5	0	Median	0.74127	0.87804	36.248	7	1	Median	1.0519	1.0711	10.105	5	0	Median	1.0555	1.1483	64.141	7	0	Median	38287000000	17874000000	20413000000	6567800000	2930300000	3637400000	9188200000	4768500000	4419800000	11956000000	5077400000	6878600000	10575000000	5097900000	5476900000	12634	1278	11985	77436;77437;77438;77439;77440;77441;77442;77443;77444;77445;77446;77447;77448;77449;77450;77451;77452;77453;77454;77455;77456;77457;77458;77459;77460	104699;104700;104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730;104731;104732;104733;104734;104735;104736;104737;104738;104739;104740;104741;104742;104743;104744;104745;104746;104747;104748;104749;104750;104751;104752;104753;104754;104755;104756;104757;104758;104759;104760;104761;104762;104763;104764;104765;104766;104767;104768;104769;104770;104771;104772;104773;104774	104712			76	
ELPSFLGKR	1	Unmodified	1045.592	0.59202969	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		50.973	49.922	3	0.00045013	41734	160511_QHF_FH_JSI10i_3	75.378	51.223			0.48161	0.44584	67.04	3	2	Median	1.2926	1.0544	NaN	1	0	Median	0.24129	0.28146	NaN	1	1	Median	0.48161	0.44584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85836000	48932000	36904000	39676000	17929000	21747000	24809000	17545000	7263700	21351000	13457000	7893700	0	0	0	12635	1278	11986	77461;77462;77463	104775;104776;104777;104778	104776			4	
ELPSFLGKR	1	Acetyl (K)	1087.6026	0.60259438	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		76.094	65.534	2	0.001931	32722	160513_QHF_FH_JSI10Kac_5	88.948	40.444			0.23724	0.25649	28.464	2	1	Median	NaN	NaN	NaN	0	0	Median	0.17672	0.20973	NaN	1	1	Median	0.3185	0.31368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20003000	14767000	5235500	0	0	0	5520000	4682600	837350	14483000	10085000	4398200	0	0	0	12636	1278	11986	77464;77465;77466	104779;104780;104781	104781	1189		3	
ELPSGKK	2	Unmodified	757.4334	0.43340378	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	7.001	6.7353	2	0.010711	4836	160511_QHF_FH_JSI10i_2	74.415	11.701			1.1209	1.1657	8.496	6	0	Median	1.4808	1.2756	NaN	1	0	Median	0.94637	1.1727	NaN	1	0	Median	1.1224	1.1015	7.1688	2	0	Median	1.0658	1.1553	12.817	2	0	Median	4698500000	2308400000	2390100000	357990000	148790000	209200000	417970000	209660000	208310000	1320400000	633350000	687080000	2602100000	1316600000	1285600000	12637	1333	11987	77467;77468;77469;77470;77471;77472	104782;104783;104784;104785;104786;104787;104788	104786			7	
ELPSGQYTEAEEFFVK	1	Unmodified	1872.8782	0.87816011	4860	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	85.171	84.671	2	0.010427	77158	160511_QHF_FH_JSI12i_1	54.7	32.167			0.38456	0.38086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38456	0.38086	NaN	1	1	Median	12828000	9681500	3146000	0	0	0	0	0	0	0	0	0	12828000	9681500	3146000	12638	4860	11988	77473	104789	104789			1	
ELPSTFGQLSALK	1	Unmodified	1389.7504	0.75038083	3578	Q8N9N7	LRRC57	Leucine-rich repeat-containing protein 57	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.891	78.26	2	0.00069087	68681	160511_QHF_FH_JSI11i_2	83.397	53.142			0.47484	0.48694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47484	0.48694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90414000	73426000	16988000	0	0	0	0	0	0	90414000	73426000	16988000	0	0	0	12639	3578	11989	77474	104790	104790			1	
ELPTEPPYTAYVGNLPFNTVQGDIDAIFK	1	Unmodified	3208.5968	0.59684688	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.2	0.4	4	1								1	1	2	1	102.62	102.52	3	1.3323E-37	93311	160511_QHF_FH_JSI10i_1	162.26	154.69			0.97288	1.0131	24.836	5	0	Median	1.864	1.5415	NaN	1	0	Median	0.84746	1.0131	NaN	1	0	Median	1.0474	1.0397	7.7037	2	0	Median	0.74559	0.77527	NaN	1	0	Median	723920000	331100000	392820000	89023000	16042000	72980000	264670000	119350000	145310000	306290000	151750000	154550000	63943000	43958000	19985000	12640	2619	11990	77475;77476;77477;77478;77479	104791;104792;104793;104794	104791			4	
ELPTVVFR	0	Unmodified	959.54402	0.54401687	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.792	62.889	2	0.00024038	54727	160511_QHF_FH_JSI11i_2	117.16	96.605			0.93758	0.98671	7.4665	4	0	Median	1.1616	0.98238	NaN	1	0	Median	0.87826	1.0935	NaN	1	0	Median	1.0009	0.99106	NaN	1	0	Median	0.82714	0.91164	NaN	1	0	Median	349380000	183520000	165860000	61135000	27965000	33170000	68130000	39825000	28305000	145230000	76625000	68604000	74889000	39105000	35785000	12641	4481	11991	77480;77481;77482;77483	104795;104796;104797;104798;104799;104800;104801	104799			7	
ELPVNAQNYVR	0	Unmodified	1301.6728	0.67279921	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	51.522	50.697	2	2.0626E-09	44423	160511_QHF_FH_JSI9i_2	131.44	81.626			1.0566	0.97818	18.494	8	0	Median	1.0727	0.89301	8.5607	2	0	Median	0.91353	1.0855	33.577	2	0	Median	1.1071	1.1044	12.835	2	0	Median	0.96612	1.0481	21.518	2	0	Median	1580500000	820140000	760370000	288960000	123130000	165820000	382220000	231730000	150490000	444190000	210930000	233260000	465140000	254340000	210800000	12642	1356	11992	77484;77485;77486;77487;77488;77489;77490;77491	104802;104803;104804;104805;104806;104807;104808;104809;104810;104811;104812;104813	104811			12	
ELPWPPTFEK	1	Unmodified	1242.6285	0.62847478	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		4									2	2		81.001	80.377	2	0.011117	71744	160511_QHF_FH_JSI10i_2	47.187	18.978			1.2793	1.2792	49.337	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2793	1.2792	49.337	2	1	Median	NaN	NaN	NaN	0	0	Median	60703000	28843000	31859000	0	0	0	0	0	0	60703000	28843000	31859000	0	0	0	12643	5119	11993	77492;77493;77494;77495	104814;104815;104816;104817	104817			4	
ELQAAGK	1	Unmodified	715.38645	0.38645359	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	3.49	6	7	4			2				4	6	5	4	7.1285	6.0513	2	0.0071824	4481	160511_QHF_FH_JSI12i_2	89.673	60.335			0.79017	0.75326	117.13	18	17	Median	1.2767	1.0534	130.69	4	4	Median	0.35577	0.42917	127.56	5	5	Median	0.3401	0.33231	139.46	5	5	Median	1.7346	1.8505	93.427	4	3	Median	25992000000	12386000000	13606000000	4142400000	1682200000	2460200000	8995900000	4684800000	4311100000	8321400000	3926900000	4394500000	4532700000	2092200000	2440500000	12644	856	11994	77496;77497;77498;77499;77500;77501;77502;77503;77504;77505;77506;77507;77508;77509;77510;77511;77512;77513;77514	104818;104819;104820;104821;104822;104823;104824;104825;104826;104827;104828;104829;104830;104831;104832;104833;104834;104835;104836	104821			19	
ELQAAGKSPEDLER	1	Acetyl (K)	1583.7791	0.77911477	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	53.156	43.81	2	0.0020858	23551	160513_QHF_FH_JSI12Kac_3	73.848	63.324			0.49044	0.54332	91.663	2	1	Median	NaN	NaN	NaN	0	0	Median	0.25233	0.28416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95324	1.0388	NaN	1	0	Median	3987000	2876900	1110100	0	0	0	882000	816420	65585	602860	602860	0	2502100	1457600	1044500	12645	856	11995	77515;77516;77517	104837;104838;104839;104840	104838	533		4	
ELQAEQEDR	0	Unmodified	1116.5047	0.50473083	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	10.892	7.5707	2	1.627E-06	7143	160511_QHF_FH_JSI10i_1	131.11	84.038			0.93912	1.0088	17.478	7	2	Median	1.2073	1.0088	NaN	1	0	Median	0.95133	1.1244	2.1183	2	0	Median	0.90031	0.87278	33.007	2	1	Median	0.87465	0.93946	6.9763	2	1	Median	1235400000	627190000	608230000	335680000	160260000	175420000	303000000	157260000	145740000	294040000	172560000	121490000	302690000	137110000	165580000	12646	2147	11996	77518;77519;77520;77521;77522;77523;77524	104841;104842;104843;104844;104845;104846;104847;104848;104849	104844			9	
ELQAFLEQVNR	0	Unmodified	1345.699	0.69901396	5619	Q9Y4B5	MTCL1	Microtubule cross-linking factor 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.997	67.409	2	0.025058	58915	160511_QHF_FH_JSI11i_2	48.44	29.66			1.697	1.7235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.697	1.7235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19255000	5536800	13719000	0	0	0	0	0	0	19255000	5536800	13719000	0	0	0	12647	5619	11997	77525	104850	104850			1	
ELQAHGADELLK	1	Unmodified	1322.683	0.68302954	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	39.713	38.683	2;3	1.0296E-05	33778	160511_QHF_FH_JSI9i_2	101.3	86.102			0.90029	0.87307	19.953	7	2	Median	0.95292	0.81389	9.9277	2	0	Median	0.57427	0.70792	32.435	2	1	Median	0.94974	0.97041	NaN	1	0	Median	0.81182	0.91972	16.406	2	1	Median	1396100000	724470000	671590000	252580000	134020000	118550000	366790000	198900000	167880000	387180000	197750000	189440000	389520000	193800000	195720000	12648	256	11998	77526;77527;77528;77529;77530;77531;77532	104851;104852;104853;104854;104855;104856;104857;104858;104859	104854			9	
ELQALGFQPGPITDTTR	0	Unmodified	1842.9476	0.94757708	3611	Q8NC56	LEMD2	LEM domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	74.929	74.583	2	2.3246E-10	67765	160511_QHF_FH_JSI11i_1	143.25	108.36			0.45393	0.48368	25.978	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.42763	0.47789	NaN	1	1	Median	0.73738	0.71185	27.783	2	2	Median	0.5153	0.53068	NaN	1	1	Median	119440000	76908000	42532000	0	0	0	33143000	22041000	11101000	57255000	34016000	23239000	29043000	20850000	8192100	12649	3611	11999	77533;77534;77535;77536;77537	104860;104861;104862;104863;104864;104865;104866	104860			7	
ELQALYALQALVVTLEQPPNLLR	0	Unmodified	2591.4687	0.46867366	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.31	6.59		4	2	1					6	4	5	4		103.82	99.271	2;3;4	1.2013E-74	57663	160513_QHF_FH_JSI10Kac_6	265.45	238.04			0.98578	1.0407	17.598	12	3	Median	1.3639	1.1742	19.398	4	2	Median	0.81696	0.98229	12.138	4	0	Median	0.98183	0.93535	19.471	4	1	Median	NaN	NaN	NaN	0	0	Median	3224000000	1671300000	1552700000	955300000	435900000	519400000	1480100000	779430000	700660000	788640000	455960000	332670000	0	0	0	12650	2217	12000	77538;77539;77540;77541;77542;77543;77544;77545;77546;77547;77548;77549;77550	104867;104868;104869;104870;104871;104872;104873;104874;104875;104876;104877;104878;104879;104880;104881;104882	104881			16	
ELQDSTQMNEK	1	Unmodified	1321.582	0.58199487	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	16.43	15.842	2	1.127E-47	13257	160511_QHF_FH_JSI11i_1	215.06	157.88			0.66034	0.61704	54.202	5	4	Median	1.1302	0.93105	77.258	2	2	Median	0.53221	0.61704	NaN	1	1	Median	1.0549	1.0191	NaN	1	0	Median	0.39682	0.41397	NaN	1	1	Median	480140000	239530000	240610000	222050000	94223000	127820000	101610000	60205000	41402000	77343000	32788000	44555000	79143000	52313000	26830000	12651	2454	12001	77551;77552;77553;77554;77555	104883;104884;104885;104886;104887;104888	104883			6	
ELQEAQNER	0	Unmodified	1115.5207	0.52071524	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By matching			1	0	2									1	1			8.7647	8.3046	2	0.0035285	5886	160511_QHF_FH_JSI9i_1	59.931	36.888			0.86213	0.85023	16.914	2	0	Median	1.1619	0.95825	NaN	1	0	Median	0.63969	0.75439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79968000	50634000	29334000	33733000	16659000	17074000	46235000	33975000	12260000	0	0	0	0	0	0	12652	4903	12002	77556;77557	104889	104889			1	
ELQEESGLTVDALHK	1	Unmodified	1667.8366	0.83662965	1458	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		51.038	50.17	2;3	1.9719E-05	45164	160511_QHF_FH_JSI10i_1	84.365	60.616			1.5459	1.4155	56.544	2	0	Median	1.1473	0.94901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.083	2.1113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118520000	58756000	59763000	56758000	29793000	26964000	0	0	0	61762000	28963000	32799000	0	0	0	12653	1458	12003	77558;77559;77560	104890;104891	104890			1	
ELQEGTYVMVAGPSFETVAECR	0	Unmodified	2472.1301	0.13011083	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	85.056	84.556	3	0.0039656	77058	160511_QHF_FH_JSI12i_1	40.81	26.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12654	771	12004	77561	104892	104892			1	
ELQELEPENK	1	Unmodified	1227.5983	0.59829686	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.692	31.427	2	0.00083612	27510	160511_QHF_FH_JSI9i_1	76.143	52.823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12655	3873	12005	77562	104893	104893			1	
ELQELLK	1	Unmodified	871.50148	0.50148335	2574;5168	Q14789;Q9NZW5	GOLGB1;MPP6	Golgin subfamily B member 1;MAGUK p55 subfamily member 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	45.922	45.069	2	0.011216	39717	160511_QHF_FH_JSI10i_2	62.659	0			0.44318	0.41835	187.74	2	2	Median	0.13036	0.11092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5066	1.5779	NaN	1	1	Median	207510000	168320000	39181000	168670000	149980000	18688000	0	0	0	0	0	0	38840000	18347000	20492000	12656	2574;5168	12006	77563;77564;77565;77566	104894;104895;104896;104897	104897			4	
ELQELNELFK	1	Unmodified	1261.6554	0.65541781	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	79.714	79.19	2	0.025123	72167	160511_QHF_FH_JSI12i_1	42.338	20.652			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12657	3754	12007	77567	104898	104898			1	
ELQELNELFKPVVAAQK	2	Unmodified	1955.0728	0.072777598	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	1				By MS/MS	2.67	0.471		1	2										3	87.645	87.239	3	2.2525E-08	75789	160511_QHF_FH_JSI12i_3	130.29	99.752			2.0173	2.0187	153.5	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0173	2.0187	153.5	3	2	Plateau	164060000	73088000	90968000	0	0	0	0	0	0	0	0	0	164060000	73088000	90968000	12658	3754	12008	77568;77569;77570	104899;104900;104901	104901			3	
ELQELQDSLNAER	0	Unmodified	1543.7478	0.74781464	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	53.215	52.51	2	4.3581E-07	47738	160511_QHF_FH_JSI12i_1	180.24	134.24			0.98022	0.99959	35.831	7	7	Median	1.1756	0.95819	66.894	2	2	Median	0.8041	0.94203	NaN	1	1	Median	0.92396	0.90462	47.712	2	2	Median	1.1189	1.14	18.585	2	2	Median	576070000	280160000	295910000	130900000	59437000	71464000	92873000	50843000	42030000	181290000	95919000	85374000	171000000	73963000	97037000	12659	1016	12009	77571;77572;77573;77574;77575;77576;77577	104902;104903;104904;104905;104906;104907;104908;104909	104906			8	
ELQELQDSLNAEREK	1	Unmodified	1800.8854	0.88537076	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		48.6	47.726	2;3	0.0005689	42049	160511_QHF_FH_JSI10i_2	73.983	58.829			0.48357	0.50124	15.742	2	2	Median	0.5135	0.44843	NaN	1	1	Median	0.45539	0.56025	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	216210000	169990000	46217000	98533000	74301000	24232000	98859000	76873000	21985000	18815000	18815000	0	0	0	0	12660	1016	12010	77578;77579;77580;77581	104910;104911;104912;104913	104912			4	
ELQELSSSIK	1	Unmodified	1132.5976	0.59756858	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.366	40.885	2	0.00063586	37202	160511_QHF_FH_JSI12i_1	85.807	44.505			4.7877	4.79	1.8588	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.877	4.7275	NaN	1	1	Median	4.7	4.8534	NaN	1	1	Median	111670000	23142000	88531000	0	0	0	0	0	0	60073000	13802000	46271000	51600000	9339300	42260000	12661	615	12011	77582;77583	104914;104915	104915			2	
ELQELVQYPVEHPDK	1	Unmodified	1822.9101	0.91012895	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.39	2.93	15	16	5				1	1		10	11	9	8	58.482	57.413	2;3;4	4.4046E-18	50880	160511_QHF_FH_JSI9i_1	205.72	146.29			1.1759	1.0471	77.45	36	35	Median	0.99838	0.8074	68.254	9	8	Median	0.55336	0.67128	87.187	10	10	Median	1.4076	1.3579	85.877	9	9	Median	1.4326	1.5411	73.811	8	8	Median	11666000000	5677800000	5987800000	2082800000	811060000	1271800000	2858300000	1652300000	1206000000	3115300000	1438900000	1676400000	3609200000	1775600000	1833600000	12662	1846	12012	77584;77585;77586;77587;77588;77589;77590;77591;77592;77593;77594;77595;77596;77597;77598;77599;77600;77601;77602;77603;77604;77605;77606;77607;77608;77609;77610;77611;77612;77613;77614;77615;77616;77617;77618;77619;77620;77621	104916;104917;104918;104919;104920;104921;104922;104923;104924;104925;104926;104927;104928;104929;104930;104931;104932;104933;104934;104935;104936;104937;104938;104939;104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952;104953;104954;104955;104956;104957;104958;104959;104960;104961;104962;104963;104964;104965	104947			50	
ELQEQAEK	1	Unmodified	973.47164	0.47163978	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	8.4957	8.0688	2	0.00097275	5935	160511_QHF_FH_JSI10i_1	95.741	54.514			0.98789	0.83619	26.85	3	0	Median	1.0168	0.83619	NaN	1	0	Median	0.98789	1.1749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67249	0.69156	NaN	1	0	Median	186500000	88535000	97960000	53250000	19289000	33961000	74918000	38295000	36623000	0	0	0	58327000	30951000	27376000	12663	4140	12013	77622;77623;77624	104966;104967;104968;104969	104967			4	
ELQEQLK	1	Unmodified	886.476	0.47599688	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.064	17.944	2	0.056861	15242	160511_QHF_FH_JSI11i_1	46.426	0			1.6658	1.6197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6658	1.6197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	267080000	142310000	124770000	0	0	0	0	0	0	267080000	142310000	124770000	0	0	0	12664	558	12014	77625	104970	104970			1	
ELQEQMSR	0	Unmodified	1019.4706	0.47059393	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	15.616	12.413	2	8.8036E-05	10866	160511_QHF_FH_JSI11i_1	131.22	42.08			0.77207	0.79839	42.425	6	0	Median	0.65437	0.53993	NaN	1	0	Median	0.80897	0.96731	41.997	2	0	Median	1.1538	1.1265	33.828	2	0	Median	0.51667	0.536	NaN	1	0	Median	2722800000	1783000000	939830000	736410000	485000000	251410000	723960000	459250000	264710000	732920000	466440000	266480000	529500000	372280000	157220000	12665	3218	12015	77626;77627;77628;77629;77630;77631	104971;104972;104973;104974;104975;104976;104977;104978;104979;104980	104972			10	
ELQEQMSR	0	Oxidation (M)	1035.4655	0.46550855	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	6.8288	5.1351	2	0.008384	4320	160511_QHF_FH_JSI12i_1	65.246	38.644			1.0321	1.1051	16.992	5	0	Median	1.3262	1.1152	NaN	1	0	Median	0.88222	1.0305	NaN	1	0	Median	1.6315	1.58	NaN	1	0	Median	1.0305	1.1036	0.20264	2	0	Median	330810000	155040000	175760000	64188000	32937000	31251000	91521000	46722000	44799000	78647000	30145000	48502000	96452000	45241000	51212000	12666	3218	12015	77632;77633;77634;77635;77636	104981;104982;104983;104984	104981		2223	4	
ELQEVIQQQNEK	1	Unmodified	1484.7471	0.74708636	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			33.242	32.903	2	2.2078E-05	29400	160511_QHF_FH_JSI10i_1	89.266	57.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12667	4215	12016	77637	104985	104985			1	
ELQGDGPPSSPTNDPTVK	1	Unmodified	1837.8694	0.86938634	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	33.818	33.318	2	2.894E-11	30070	160511_QHF_FH_JSI12i_1	169.04	116.25			0.81538	0.80784	15.4	6	5	Median	0.89083	0.75809	NaN	1	0	Median	0.65787	0.76092	27.676	2	2	Median	0.84965	0.81823	16.701	2	2	Median	0.8091	0.86085	NaN	1	1	Median	194930000	107520000	87411000	31452000	18187000	13265000	76867000	42712000	34155000	64410000	36297000	28113000	22197000	10319000	11878000	12668	2318	12017	77638;77639;77640;77641;77642;77643	104986;104987;104988;104989;104990;104991;104992;104993	104989			8	
ELQGLQNFPEKPHH	1	Acetyl (K)	1714.8427	0.84271808	5240	Q9UBK9	UXT	Protein UXT	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		66.115	55.199	3	0.0075778	29877	160513_QHF_FH_JSI11Kac_5	43.813	39.344			0.34296	0.33834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34296	0.33834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4358800	3215500	1143300	0	0	0	0	0	0	4358800	3215500	1143300	0	0	0	12669	5240	12018	77644	104994	104994	3344		1	
ELQHAALGGTATR	0	Unmodified	1323.6895	0.6895119	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.59		10	5						4	4	4	6	5	19.25	17.554	2;3	3.4282E-05	14162	160511_QHF_FH_JSI12i_3	123.84	75.276			1.0434	1.0972	36.536	18	7	Median	1.7783	1.5446	27.602	4	3	Median	0.94382	1.1456	42.658	4	1	Median	1.014	0.97286	21.334	5	2	Median	0.8806	0.88842	44.668	5	1	Median	1436500000	733370000	703090000	180350000	69784000	110560000	210650000	108260000	102390000	625780000	329830000	295950000	419680000	225490000	194190000	12670	210	12019	77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656;77657;77658;77659;77660;77661;77662;77663	104995;104996;104997;104998;104999;105000;105001;105002;105003;105004;105005;105006;105007;105008;105009;105010;105011;105012;105013;105014;105015;105016;105017;105018;105019;105020;105021	105016			27	
ELQLEYLLGAFESLGK	1	Unmodified	1808.956	0.95601651	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		4									2	2		103.2	103.12	2;3	4.4376E-11	91675	160511_QHF_FH_JSI10i_2	105.19	68.344			0.87462	1.1147	21.317	3	2	Median	NaN	NaN	NaN	0	0	Median	0.87462	1.1147	NaN	1	1	Median	1.0673	1.0617	29.883	2	1	Median	NaN	NaN	NaN	0	0	Median	93849000	46792000	47057000	0	0	0	13632000	7516300	6115300	80217000	39276000	40942000	0	0	0	12671	2997	12020	77664;77665;77666;77667	105022;105023;105024;105025;105026	105026			5	
ELQLPSMSMLTSK	1	Unmodified	1463.7364	0.73638702	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	2	2	2	88.629	88.138	2	3.3743E-12	76123	160511_QHF_FH_JSI12i_2	117.98	60.377			0.90886	0.94197	17.29	6	3	Median	1.127	0.9492	NaN	1	1	Median	0.72242	0.8717	13.033	2	0	Median	0.90886	0.90311	4.8781	2	2	Median	1.2013	1.3251	NaN	1	0	Median	336790000	179300000	157490000	61486000	31614000	29872000	101970000	60986000	40986000	127390000	71507000	55882000	45941000	15193000	30748000	12672	3290	12021	77668;77669;77670;77671;77672;77673;77674;77675	105027;105028;105029;105030;105031;105032;105033;105034;105035;105036;105037	105029			11	
ELQLQKQK	2	Acetyl (K)	1055.5975	0.597509	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				1	3	1	37.75	28.642	2	0.02225	16773	160513_QHF_FH_JSI11Kac_3	65.252	27.694			2.3929	2.5203	5.7441	2	2	Median	NaN	NaN	NaN	0	0	Median	2.3848	2.6247	NaN	1	1	Median	2.401	2.4199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9518800	7554400	1964400	0	0	0	1120400	416140	704220	7572100	6312000	1260100	826310	826310	0	12673	1085	12022	77676;77677;77678;77679;77680	105038;105039;105040;105041;105042	105038	935		5	
ELQMHSHLLK	1	Unmodified	1234.6492	0.64922699	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			102.04	101.87	2	0.012789	84527	160511_QHF_FH_JSI10i_3	44.753	12.819			1.0254	0.99304	23.573	2	0	Median	1.0487	0.84058	NaN	1	0	Median	1.0025	1.1732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	495630000	243780000	251850000	216750000	104690000	112060000	278880000	139080000	139790000	0	0	0	0	0	0	12674	4117	12023	77681;77682	105043;105044	105043			2	
ELQNAPDAIPESGVEPPALDTAWVEATR	0	Unmodified	2975.4512	0.45124528	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	98.772	98.629	3	6.2397E-06	89228	160511_QHF_FH_JSI10i_1	52.249	49.873			1.0375	1.0385	7.8736	4	0	Median	1.4374	1.1957	NaN	1	0	Median	0.86584	1.0079	NaN	1	0	Median	1.0813	1.061	NaN	1	0	Median	0.99546	1.0165	NaN	1	0	Median	171530000	81609000	89925000	22580000	8839900	13740000	72000000	38582000	33418000	44166000	16578000	27587000	32788000	17608000	15180000	12675	2349	12024	77683;77684;77685;77686	105045;105046	105045			2	
ELQNAPDAIPESGVEPPALDTAWVEATRK	1	Unmodified	3103.5462	0.5462083	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		82.038	81.545	3;4	0.00063002	79898	160511_QHF_FH_JSI11i_2	36.533	30.099			1.308	1.1472	41.858	3	2	Plateau	1.308	1.1472	NaN	1	0	Median	1.1938	1.3558	NaN	1	1	Median	0.63032	0.6129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49048000	19847000	29201000	17936000	6814300	11122000	22224000	6611800	15612000	8887900	6421000	2466900	0	0	0	12676	2349	12025	77687;77688;77689	105047;105048;105049	105049			3	
ELQNEVEK	1	Unmodified	987.48729	0.48728985	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.295	13.453	2	0.0011248	11168	160511_QHF_FH_JSI11i_1	111.95	28.741			0.38509	0.37346	48.345	5	4	Median	0.47521	0.39262	NaN	1	1	Median	0.89084	1.0392	NaN	1	0	Median	0.37455	0.36298	4.0226	2	2	Median	0.30295	0.31682	NaN	1	1	Median	1154200000	696170000	457980000	217130000	124690000	92438000	343300000	197750000	145550000	282600000	176600000	105990000	311130000	197130000	114000000	12677	3315	12026	77690;77691;77692;77693;77694	105050;105051;105052;105053;105054	105050			5	
ELQNFLSMFQK	1	Unmodified	1383.6857	0.68567208	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.6	0.49		2	3							1		3	1	98.436	98.383	2	2.5369E-09	85172	160511_QHF_FH_JSI12i_3	129.16	91.07			0.97538	0.93139	42.208	5	3	Median	1.8951	1.6621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97538	0.93139	46.347	3	2	Median	0.8523	0.8736	NaN	1	0	Median	137180000	71358000	65819000	17952000	7352900	10599000	0	0	0	68784000	33945000	34839000	50442000	30060000	20381000	12678	2302	12027	77695;77696;77697;77698;77699	105055;105056;105057;105058;105059;105060	105060			6	
ELQNTVSQLLESEGWNRR	0	Unmodified	2158.0767	0.076693777	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				83.725	82.443	3	0.014325	67620	160511_QHF_FH_JSI9i_3	33.697	19.539			1.4605	1.1976	NaN	1	0	Median	1.4605	1.1976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27444000	14275000	13168000	27444000	14275000	13168000	0	0	0	0	0	0	0	0	0	12679	3217	12028	77700	105061;105062	105061			2	
ELQPSEEVTWK	1	Unmodified	1344.6561	0.65614609	526	O75438	NDUFB1	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.72	48.04	2	2.8044E-09	43627	160511_QHF_FH_JSI12i_1	150.35	140.57			0.56138	0.54699	7.4253	4	1	Median	0.67451	0.56066	NaN	1	0	Median	0.45499	0.53366	NaN	1	0	Median	0.62376	0.61592	NaN	1	1	Median	0.50523	0.52065	NaN	1	0	Median	678220000	378060000	300170000	162660000	92739000	69917000	146720000	87441000	59280000	176950000	99703000	77248000	191900000	98173000	93724000	12680	526	12029	77701;77702;77703;77704	105063;105064;105065;105066;105067;105068;105069	105064			7	
ELQQAVLHMEQR	0	Unmodified	1480.7456	0.74564657	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.4	6.47		1	1					1	2	1		3	1	45.913	40.746	2;3	4.452E-05	34986	160511_QHF_FH_JSI11i_2	111.12	42.23			0.56495	0.59079	24.091	3	2	Plateau	1.1439	0.91399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58641	0.6031	2.917	2	2	Median	NaN	NaN	NaN	0	0	Median	57397000	33799000	23598000	2484400	760230	1724200	0	0	0	54913000	33039000	21873000	0	0	0	12681	2195	12030	77705;77706;77707;77708;77709	105070;105071;105072;105073;105074	105073			5	
ELQQELQEYEVVTESEK	1	Unmodified	2079.9848	0.98481003	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.355	70.823	2	7.2536E-108	64524	160511_QHF_FH_JSI12i_1	308.68	268.81			0.61279	0.60115	10.565	4	4	Median	0.64077	0.5239	NaN	1	1	Median	0.50341	0.60138	NaN	1	1	Median	0.6886	0.67846	NaN	1	1	Median	0.58604	0.60092	NaN	1	1	Median	569670000	359820000	209850000	104610000	63157000	41453000	222600000	142080000	80516000	114520000	74860000	39656000	127950000	79725000	48224000	12682	3961	12031	77710;77711;77712;77713	105075;105076;105077;105078;105079;105080	105076			6	
ELQQLEMNLSEINSECK	1	Unmodified	2063.9504	0.95035556	5801				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				71.391	70.447	2	0.00069773	62631	160511_QHF_FH_JSI9i_1	63.727	41.854	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12683	5801	12032	77714	105081	105081			1	
ELQQQLVDAK	1	Unmodified	1170.6245	0.62445203	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	32.712	32.022	2	1.3221E-09	28631	160511_QHF_FH_JSI11i_1	134.84	97.286			0.54451	0.51373	26.872	3	1	Plateau	0.59721	0.49712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52384	0.51373	NaN	1	0	Median	0.76044	0.80419	NaN	1	1	Median	655670000	425350000	230320000	203860000	132620000	71240000	0	0	0	246520000	151090000	95432000	205300000	141650000	63649000	12684	5011	12033	77715;77716;77717	105082;105083;105084	105082			3	
ELQREPLTPEEVQSVR	0	Unmodified	1908.9905	0.99050453	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.06	1	6	3				2	4		3	5	6	2	51.303	46.705	2;3	6.3609E-08	41289	160511_QHF_FH_JSI11i_3	117.07	107.28			0.90873	0.98575	14.145	15	2	Median	1.1907	1.0257	24.101	3	0	Median	0.8135	0.98575	13.996	5	0	Median	0.99795	0.95015	9.8088	5	2	Median	0.8824	0.96386	5.2382	2	0	Median	2159500000	1063500000	1096000000	405960000	182670000	223280000	582260000	281360000	300910000	1147800000	585880000	561910000	23481000	13581000	9899600	12685	3042	12034	77718;77719;77720;77721;77722;77723;77724;77725;77726;77727;77728;77729;77730;77731;77732;77733	105085;105086;105087;105088;105089;105090;105091;105092;105093;105094;105095;105096;105097;105098;105099;105100;105101;105102;105103	105087			19	
ELQSLLVEER	0	Unmodified	1214.6507	0.65066678	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.73	3	6					1			1	4	2	3	56.749	54.985	2	2.0275E-07	48324	160511_QHF_FH_JSI9i_2	117.02	74.735			0.77601	0.79841	53.733	10	7	Median	0.99693	0.84992	NaN	1	0	Median	0.79819	0.94866	60.223	4	3	Median	0.91961	0.93809	101.96	2	2	Median	0.66404	0.75002	38.376	3	2	Median	615120000	332980000	282140000	66533000	34665000	31867000	179770000	107170000	72603000	178090000	81111000	96983000	190730000	110040000	80688000	12686	1450	12035	77734;77735;77736;77737;77738;77739;77740;77741;77742;77743	105104;105105;105106;105107;105108;105109;105110;105111;105112;105113;105114;105115	105111			12	
ELQSMADQEK	1	Unmodified	1177.5285	0.52850274	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	19.203	18.808	2	9.1577E-06	15992	160511_QHF_FH_JSI11i_1	140.45	110.97			0.70259	0.74335	61.357	6	6	Median	0.68594	0.5714	NaN	1	1	Median	0.99309	1.1536	46.208	2	2	Median	1.1625	1.1429	76.781	2	2	Median	0.37656	0.40213	NaN	1	1	Median	563240000	289110000	274130000	77649000	38592000	39057000	186540000	92913000	93629000	206210000	97933000	108280000	92838000	59674000	33164000	12687	4000	12036	77744;77745;77746;77747;77748;77749	105116;105117;105118;105119;105120;105121;105122	105116			7	
ELQSMADQEQVSPAAIK	1	Unmodified	1843.8986	0.89857798	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.745	5		1							1	1	2	2	53.014	52.347	2;3	2.2641E-65	47358	160511_QHF_FH_JSI11i_1	226.19	212.51			0.86183	0.85693	12.749	4	0	Median	0.8635	0.71754	NaN	1	0	Median	0.74227	0.8798	NaN	1	0	Median	0.86016	0.83466	NaN	1	0	Median	0.94881	0.97425	NaN	1	0	Median	450640000	239570000	211070000	115430000	56604000	58824000	112100000	70325000	41778000	124790000	61625000	63167000	98315000	51013000	47302000	12688	1394	12037	77750;77751;77752;77753;77754;77755	105123;105124;105125;105126;105127;105128;105129;105130;105131;105132	105125			10	
ELQSMADQEQVSPAAIKK	2	Unmodified	1971.9935	0.993541	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	45.711	44.837	3	7.2378E-13	38294	160511_QHF_FH_JSI12i_2	175.8	153.33			1.5295	1.5719	60.816	6	5	Median	2.5452	2.1786	NaN	1	1	Median	1.1482	1.3189	86.045	2	2	Median	1.1529	1.1341	NaN	1	0	Median	1.0625	1.2104	90.824	2	2	Median	506910000	246640000	260270000	36933000	15063000	21870000	234480000	112200000	122280000	116290000	55409000	60882000	119210000	63962000	55246000	12689	1394	12038	77756;77757;77758;77759;77760;77761	105133;105134;105135;105136;105137;105138	105134			6	
ELQSQIQEAR	0	Unmodified	1200.6099	0.6098646	5226	Q9P2X0	DPM3	Dolichol-phosphate mannosyltransferase subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.12	4	1				3	2			1	3	3	3	25.466	21.081	2	2.2647E-09	18329	160511_QHF_FH_JSI11i_1	129.85	49.622			0.89496	0.95021	35.119	10	2	Median	1.0782	0.86409	NaN	1	0	Median	0.81447	0.97364	69.012	3	2	Median	0.77817	0.75484	18.752	3	0	Plateau	0.75478	0.79425	12.032	3	0	Plateau	1039800000	550300000	489480000	254280000	121770000	132510000	241050000	139930000	101120000	292680000	159220000	133450000	251780000	129370000	122410000	12690	5226	12039	77762;77763;77764;77765;77766;77767;77768;77769;77770;77771	105139;105140;105141;105142;105143;105144;105145;105146;105147;105148;105149;105150;105151;105152;105153;105154	105140			16	
ELQSQISDTSVVLSMDNSR	0	Unmodified	2108.0056	0.005562248	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	70.72	70.197	2;3	3.0718E-67	63522	160511_QHF_FH_JSI10i_1	283.07	206.55		+	0.67391	0.8938	12.557	10	4	Plateau	1.2553	1.0146	12.152	2	0	Median	0.67391	0.79891	6.9038	2	0	Median	0.79721	0.76403	11.642	3	2	Plateau	0.83715	0.86531	10.23	3	2	Plateau	541440000	291080000	250370000	59757000	25698000	34059000	150760000	91901000	58861000	161020000	80984000	80037000	169900000	92493000	77409000	12691	51	12040	77772;77773;77774;77775;77776;77777;77778;77779;77780;77781	105155;105156;105157;105158;105159;105160;105161;105162;105163;105164	105161			10	
ELQSVKPQEAPK	2	Unmodified	1352.73	0.72997974	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.79	0.558	4	9	1							3	3	5	3	19.408	18.903	2;3	0.00075489	15463	160511_QHF_FH_JSI12i_2	71.241	48.767			0.72968	0.70904	84.795	11	11	Median	0.98367	0.83648	150.91	2	2	Median	0.88188	1.0231	80.743	2	2	Median	0.72968	0.70904	69.559	5	5	Median	1.0579	1.1549	144.84	2	2	Median	664980000	351460000	313520000	40716000	24113000	16603000	100820000	59055000	41768000	355050000	198350000	156700000	168390000	69941000	98447000	12692	3906	12041	77782;77783;77784;77785;77786;77787;77788;77789;77790;77791;77792;77793;77794;77795	105165;105166;105167;105168;105169;105170;105171;105172;105173;105174;105175;105176;105177;105178	105166			14	
ELQTLHNLRK	1	Unmodified	1250.7095	0.70951906	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			22.493	21.229	3	0.0042903	17179	160511_QHF_FH_JSI9i_3	49.5	24.064			9.2116	7.4292	NaN	1	1	Median	9.2116	7.4292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30379000	2239400	28140000	24162000	2239400	21922000	6217400	0	6217400	0	0	0	0	0	0	12693	1400	12042	77796;77797	105179;105180	105180			2	
ELQTQYDALK	1	Unmodified	1207.6085	0.60846762	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By matching		By MS/MS		1	0	2									1		1		39.06	38.312	2	0.047045	34441	160511_QHF_FH_JSI11i_1	36.24	7.1872			0.8617	0.77252	44.186	2	0	Median	1.2815	1.0558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57943	0.56522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81838000	50442000	31396000	38379000	19817000	18562000	0	0	0	43459000	30625000	12834000	0	0	0	12694	3858	12043	77798;77799	105181	105181			1	
ELQTSSAGLEEPPLPEDHQEEDDNLQR	0	Unmodified	3075.3905	0.39049551	4354	Q9BQ95	ECSIT	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.401	58.908	3	4.8786E-10	53542	160511_QHF_FH_JSI12i_1	75.326	72.982			1.0221	1.0524	5.66	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89156	1.0524	NaN	1	0	Median	1.1134	1.0873	NaN	1	0	Median	0.93832	0.97386	NaN	1	0	Median	121240000	59074000	62167000	0	0	0	36346000	20087000	16259000	43597000	19267000	24330000	41298000	19720000	21578000	12695	4354	12044	77800;77801;77802	105182;105183;105184;105185;105186;105187	105185			6	
ELQTVLSTYLRPLQTSEK	1	Unmodified	2105.1368	0.13683442	2503	Q14155	ARHGEF7	Rho guanine nucleotide exchange factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		90.91	90.039	3	0.00022408	80153	160511_QHF_FH_JSI11i_3	74.12	41.939			0.54702	0.44213	68.737	5	5	Median	0.72604	0.59126	41.103	2	2	Median	0.50295	0.57547	60.247	2	2	Median	0.16925	0.15857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213040000	159340000	53693000	46952000	23976000	22977000	47866000	31721000	16145000	118220000	103650000	14571000	0	0	0	12696	2503	12045	77803;77804;77805;77806;77807	105188;105189;105190;105191;105192	105188			5	
ELRDEEQTAESIK	1	Unmodified	1546.7475	0.74748029	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.514	1	8	2							2	2	3	4	27.566	26.885	2;3	1.0514E-15	22283	160511_QHF_FH_JSI12i_2	132.31	113.85			0.86888	0.87999	23.283	11	1	Median	1.3653	1.1614	6.9758	2	0	Median	0.66513	0.81477	1.958	2	0	Median	0.84152	0.86672	26.424	3	1	Plateau	0.87619	0.93099	13.65	4	0	Median	2040300000	1116700000	923570000	395800000	179060000	216730000	444450000	262220000	182230000	632930000	385980000	246950000	567100000	289440000	277650000	12697	2545	12046	77808;77809;77810;77811;77812;77813;77814;77815;77816;77817;77818	105193;105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204;105205;105206;105207	105196			15	
ELRDQIVSVQEEK	1	Unmodified	1571.8155	0.81550028	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	37.267	36.985	2;3	3.7711E-05	31471	160511_QHF_FH_JSI12i_3	78.505	56.956			0.95246	0.90191	18.517	4	1	Median	NaN	NaN	NaN	0	0	Median	0.66543	0.80667	NaN	1	1	Median	0.95246	0.90191	4.518	2	0	Median	1.0682	1.2346	NaN	1	0	Median	244360000	134140000	110220000	0	0	0	62751000	41482000	21269000	108570000	49860000	58710000	73042000	42799000	30243000	12698	8	12047	77819;77820;77821;77822	105208;105209;105210;105211;105212	105211			4	
ELREEEEK	1	Unmodified	1060.5037	0.50366819	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		6.5648	6.3685	2	0.027866	4112	160511_QHF_FH_JSI11i_2	69.812	9.2219			1.1493	1.1609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1493	1.1609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70139000	34867000	35272000	0	0	0	0	0	0	70139000	34867000	35272000	0	0	0	12699	4182	12048	77823	105213	105213			1	
ELRENTQTTIK	1	Unmodified	1331.7045	0.70449327	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.18	4	8	7				1	4		4	7	8	5	16.518	14.238	2;3	4.5401E-06	11892	160511_QHF_FH_JSI11i_3	107.97	84.591			0.93984	0.95057	39.449	24	2	Median	1.0898	0.9128	10.877	4	0	Median	0.81363	0.95286	17.73	7	0	Median	1.2002	1.1736	61.22	8	2	Median	0.92859	0.97069	14.151	5	0	Median	16155000000	7394600000	8760000000	2646400000	1192300000	1454200000	2790300000	1659400000	1130900000	7123700000	2735500000	4388200000	3594100000	1807400000	1786700000	12700	1975	12049	77824;77825;77826;77827;77828;77829;77830;77831;77832;77833;77834;77835;77836;77837;77838;77839;77840;77841;77842;77843;77844;77845;77846;77847	105214;105215;105216;105217;105218;105219;105220;105221;105222;105223;105224;105225;105226;105227;105228;105229;105230;105231;105232;105233;105234;105235;105236;105237;105238;105239;105240	105214			27	
ELREPQFR	0	Unmodified	1073.5618	0.56179219	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.734	26.425	3	0.024835	21800	160511_QHF_FH_JSI10i_3	30.687	17.309			0.81172	0.93131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81172	0.93131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72673000	38670000	34003000	0	0	0	72673000	38670000	34003000	0	0	0	0	0	0	12701	3896	12050	77848	105241	105241			1	
ELRFEIGEGENLDLPYGLER	0	Unmodified	2348.1648	0.16484008	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	96.174	96.19	3	0.0035438	83366	160511_QHF_FH_JSI12i_3	46.027	31.566			0.43341	0.45334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43341	0.45334	NaN	1	1	Median	14090000	11300000	2790200	0	0	0	0	0	0	0	0	0	14090000	11300000	2790200	12702	2193	12051	77849	105242	105242			1	
ELRPLLVFIWAK	1	Unmodified	1483.8915	0.89150618	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			92.433	86.713	3	3.5232E-06	49619	160513_QHF_FH_JSI10Kac_6	101.6	81.214			0.97025	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97025	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57241000	23515000	33726000	0	0	0	57241000	23515000	33726000	0	0	0	0	0	0	12703	3497	12052	77850;77851	105243;105244	105244			2	
ELRVEQESLLTAFR	0	Unmodified	1689.905	0.90498399	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			76.907	75.491	3	0.00032815	66714	160511_QHF_FH_JSI9i_2	65.374	43.22			0.74443	0.83188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74443	0.83188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30812000	17154000	13659000	0	0	0	30812000	17154000	13659000	0	0	0	0	0	0	12704	5227	12053	77852;77853	105245;105246	105246			2	
ELSAALQDKK	2	Unmodified	1101.603	0.60298831	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	19.896	19.278	2	0.00029533	15834	160511_QHF_FH_JSI11i_2	95.523	72.783			2.3711	2.0721	NaN	1	1	Median	2.3711	2.0721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30835000	2950700	27884000	15235000	2950700	12285000	0	0	0	15600000	0	15600000	0	0	0	12705	2587	12054	77854;77855;77856;77857	105247;105248;105249;105250	105249			4	
ELSALVK	1	Unmodified	758.4538	0.45380487	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	35.233	34.438	2	0.032543	30867	160511_QHF_FH_JSI11i_1	52.636	7.9153			0.27474	0.28838	40.862	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39926	0.38499	NaN	1	1	Median	0.18906	0.21602	NaN	1	1	Median	113550000	76096000	37453000	0	0	0	0	0	0	48150000	29314000	18835000	65399000	46781000	18618000	12706	5548	12055	77858;77859	105251;105252	105251			2	
ELSANTAAFAK	1	Unmodified	1121.5717	0.57168818	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	39.967	37.386	2	2.4536E-07	33703	160511_QHF_FH_JSI11i_1	121.5	95.765			0.83653	0.90818	22.125	5	0	Median	0.83653	0.68797	NaN	1	0	Median	0.79296	0.94867	NaN	1	0	Median	0.80825	0.80218	17.552	2	0	Median	1.1211	1.1729	NaN	1	0	Median	844770000	411430000	433330000	187430000	102770000	84665000	223810000	115610000	108210000	237060000	104980000	132080000	196460000	88076000	108380000	12707	444	12056	77860;77861;77862;77863;77864	105253;105254;105255;105256;105257;105258;105259	105253			7	
ELSAQPEVHR	0	Unmodified	1164.5887	0.58873523	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	16.559	15.912	2	1.2725E-08	13235	160511_QHF_FH_JSI9i_2	120.12	86.322			1.0213	1.0181	13.975	3	0	Median	NaN	NaN	NaN	0	0	Median	0.70007	0.86533	NaN	1	0	Median	1.0213	1.0181	NaN	1	0	Median	1.0759	1.1429	NaN	1	0	Median	78963000	42398000	36564000	0	0	0	21550000	13032000	8518500	31028000	15480000	15548000	26385000	13887000	12498000	12708	4991	12057	77865;77866;77867;77868;77869	105260;105261;105262;105263;105264;105265	105262			5	
ELSAVTFPDIIR	0	Unmodified	1359.7398	0.73981614	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.79	1	2						1			1	2	1	88.753	88.228	2	5.8871E-06	76206	160511_QHF_FH_JSI12i_2	148.56	108.49			1.3142	1.3594	19.702	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.84407	0.95606	NaN	1	1	Median	1.4021	1.4174	NaN	1	0	Median	1.0455	1.15	NaN	1	0	Median	193080000	101930000	91142000	0	0	0	23196000	13971000	9225700	109790000	54174000	55619000	60087000	33789000	26298000	12709	1528	12058	77870;77871;77872;77873	105266;105267;105268;105269;105270;105271	105267			6	
ELSDEIQVQVFEK	1	Unmodified	1562.7828	0.78280317	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			73.413	73.218	2	2.9262E-09	66382	160511_QHF_FH_JSI10i_1	104.24	86.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12710	3734	12059	77874	105272	105272			1	
ELSDFISYLQR	0	Unmodified	1369.6878	0.68778057	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.55	4	11	7						3	4	6	7	8	90.249	88.794	2;3	1.1514E-47	80455	160511_QHF_FH_JSI10i_2	214.83	163.77			0.98256	1.0337	35.682	23	9	Median	1.1802	0.9919	5.9985	2	0	Median	0.75139	0.88756	29.702	6	3	Median	1.1725	1.1665	43.842	7	2	Median	1.0869	1.124	32.196	8	4	Median	9233900000	4315300000	4918600000	903590000	371120000	532470000	1653700000	924670000	729020000	3568800000	1460900000	2107900000	3107900000	1558600000	1549200000	12711	1344	12060	77875;77876;77877;77878;77879;77880;77881;77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895;77896;77897;77898;77899	105273;105274;105275;105276;105277;105278;105279;105280;105281;105282;105283;105284;105285;105286;105287;105288;105289;105290;105291;105292;105293;105294;105295;105296;105297;105298;105299;105300;105301;105302;105303;105304;105305;105306;105307;105308;105309;105310;105311;105312;105313;105314;105315;105316;105317;105318;105319;105320;105321	105312			49	
ELSDFLR	0	Unmodified	878.44978	0.44978213	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	56.105	55.354	2	0.0029888	48625	160511_QHF_FH_JSI9i_2	107.43	47.789			1.0102	0.97845	11.884	7	0	Median	1.3815	1.1766	NaN	1	0	Median	0.78139	0.94858	1.7252	2	0	Median	1.0697	1.0654	12.039	2	0	Median	0.96721	1.0388	19.143	2	0	Median	1074500000	478470000	596030000	157450000	65564000	91891000	284150000	140750000	143400000	340970000	143370000	197600000	291930000	128780000	163150000	12712	5722	12061	77900;77901;77902;77903;77904;77905;77906	105322;105323;105324;105325;105326;105327;105328;105329;105330;105331	105325			10	
ELSDIAHR	0	Unmodified	939.47739	0.47739386	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.5	6	12	11				3	6	10	8	11	13	16	18.5	15.313	2;3	6.8152E-15	13230	160511_QHF_FH_JSI9i_2	192.11	125.07			0.83921	0.8974	61.029	44	21	Median	1.1168	0.95406	57.001	8	3	Median	0.80854	0.9701	13.384	10	2	Median	0.89753	0.87973	73.809	12	6	Median	0.82605	0.88689	76.376	14	10	Median	53266000000	26804000000	26462000000	6964700000	2787900000	4176800000	8483600000	4498200000	3985400000	19288000000	10072000000	9216300000	18529000000	9445500000	9083600000	12713	803	12062	77907;77908;77909;77910;77911;77912;77913;77914;77915;77916;77917;77918;77919;77920;77921;77922;77923;77924;77925;77926;77927;77928;77929;77930;77931;77932;77933;77934;77935;77936;77937;77938;77939;77940;77941;77942;77943;77944;77945;77946;77947;77948;77949;77950;77951;77952;77953;77954	105332;105333;105334;105335;105336;105337;105338;105339;105340;105341;105342;105343;105344;105345;105346;105347;105348;105349;105350;105351;105352;105353;105354;105355;105356;105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378;105379;105380;105381;105382;105383;105384;105385;105386;105387;105388;105389;105390;105391;105392;105393;105394	105363			63	
ELSDIAHRIVAPGK	1	Unmodified	1504.8362	0.83617614	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		50.09	49.292	3;4	0.00014237	43614	160511_QHF_FH_JSI11i_3	90.707	76.624			1.1919	1.0499	279.51	2	2	Median	9.1782	7.5768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15478	0.14547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166140000	96733000	69409000	70246000	9409000	60837000	0	0	0	95896000	87324000	8572200	0	0	0	12714	803	12063	77955;77956	105395;105396	105395			2	
ELSDLAR	0	Unmodified	802.41848	0.418482	1934	P61077	UBE2D3	Ubiquitin-conjugating enzyme E2 D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	22.978	22.377	2	0.019031	19864	160511_QHF_FH_JSI12i_1	58.981	0			0.92735	1.113	19.95	5	0	Median	1.7983	1.4799	NaN	1	0	Median	0.87895	1.0456	8.8288	2	0	Median	0.89933	0.86912	NaN	1	0	Median	1.1211	1.1595	NaN	1	0	Median	651720000	312120000	339600000	54253000	18560000	35694000	192480000	101540000	90941000	212030000	104190000	107840000	192960000	87832000	105130000	12715	1934	12064	77957;77958;77959;77960;77961	105397;105398;105399	105398			3	
ELSDLEEENR	0	Unmodified	1232.5521	0.55207495	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.101	26.91	2	0.010563	23795	160511_QHF_FH_JSI11i_1	48.048	33.408			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12716	2911	12065	77962	105400	105400			1	
ELSDLESAR	0	Unmodified	1018.4931	0.49310351	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	28.566	27.651	2	0.013585	24688	160511_QHF_FH_JSI12i_1	56.258	40.055			0.97376	0.88532	109.46	2	2	Median	2.3726	1.9198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39964	0.40826	NaN	1	1	Median	117860000	66528000	51331000	51437000	21178000	30259000	0	0	0	0	0	0	66422000	45350000	21072000	12717	1296	12066	77963;77964	105401;105402	105401			2	
ELSDPAGAIIYTSR	0	Unmodified	1491.7569	0.75692277	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	3	1	2	64.24	62.101	2;3	4.4214E-05	56295	160511_QHF_FH_JSI10i_1	120.57	97.198			1.0714	1.1503	21.58	7	3	Median	1.8394	1.5026	37.778	2	2	Median	0.93063	1.1291	7.8929	2	0	Median	1.2116	1.1756	NaN	1	1	Median	1.0185	1.0898	6.9408	2	0	Median	1042000000	496910000	545080000	207140000	95543000	111590000	255350000	136860000	118490000	289470000	126950000	162520000	290040000	137560000	152480000	12718	241	12067	77965;77966;77967;77968;77969;77970;77971;77972	105403;105404;105405;105406;105407;105408;105409;105410;105411;105412;105413;105414	105407			12	
ELSDQATASPIVAR	0	Unmodified	1456.7522	0.75217174	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	4	1	43.274	40.162	2	1.1883E-17	36380	160511_QHF_FH_JSI12i_1	215.72	166.3			0.93037	0.91512	25.287	7	5	Median	0.9326	0.75124	NaN	1	0	Median	0.84947	0.99527	NaN	1	1	Median	0.98872	0.97125	33.774	4	3	Median	0.77993	0.83525	NaN	1	1	Median	1187500000	578270000	609270000	176750000	73301000	103450000	250620000	134390000	116230000	492960000	228880000	264080000	267220000	141710000	125510000	12719	2902	12068	77973;77974;77975;77976;77977;77978;77979	105415;105416;105417;105418;105419;105420;105421;105422	105418			8	
ELSDSVTLSSSDR	0	Unmodified	1394.6525	0.65251728	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	38.54	36.285	2	5.8897E-24	32501	160511_QHF_FH_JSI10i_1	183.33	155.32			0.9267	0.95094	26.997	5	1	Median	0.89097	0.72751	NaN	1	0	Median	0.7189	0.83922	NaN	1	0	Median	1.0539	1.0369	NaN	1	0	Median	1.1388	1.1897	31.68	2	1	Median	690710000	325160000	365540000	126790000	56621000	70167000	196030000	92695000	103330000	193120000	97234000	95887000	174770000	78614000	96160000	12720	558	12069	77980;77981;77982;77983;77984	105423;105424;105425;105426;105427;105428	105426			6	
ELSEALGQIFDSQR	0	Unmodified	1591.7842	0.78420015	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6									2	4	2	83.531	82.811	2;3	1.3561E-14	71515	160511_QHF_FH_JSI12i_2	158.01	133.67			0.91186	0.97218	16.196	7	2	Median	NaN	NaN	NaN	0	0	Median	0.74531	0.90887	29.628	2	1	Median	0.92974	0.96453	7.413	3	1	Plateau	0.7871	0.87869	14.299	2	0	Median	301540000	169400000	132140000	0	0	0	83003000	49875000	33128000	120990000	67004000	53989000	97540000	52521000	45019000	12721	2271	12070	77985;77986;77987;77988;77989;77990;77991;77992	105429;105430;105431;105432;105433;105434;105435;105436;105437	105432			9	
ELSEALTR	0	Unmodified	917.48181	0.48181054	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			2	1	3	1	26.666	26.005	2	0.0017889	23031	160511_QHF_FH_JSI10i_1	82.452	7.3433			0.98622	1.0298	31.301	3	1	Plateau	1.9213	1.601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88178	0.85857	NaN	1	0	Median	1.1677	1.2352	NaN	1	0	Median	725010000	341220000	383790000	212680000	90554000	122130000	0	0	0	263200000	139900000	123300000	249130000	110770000	138360000	12722	1519	12071	77993;77994;77995;77996;77997;77998;77999	105438;105439;105440;105441;105442;105443;105444;105445	105441			8	
ELSEPSSTR	0	Unmodified	1004.4775	0.47745344	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				2	1	1	1	12.977	9.092	2	4.4117E-06	9251	160511_QHF_FH_JSI12i_1	119.41	72.981			1.0196	0.9877	10.031	5	0	Median	1.2868	1.0551	16.17	2	0	Median	0.79558	0.92985	NaN	1	0	Median	1.0196	0.9877	NaN	1	0	Median	0.99955	1.0694	NaN	1	0	Median	5804000000	2912800000	2891200000	1603000000	709770000	893240000	1511900000	809500000	702420000	1189800000	602160000	587600000	1499400000	791420000	707930000	12723	1372	12072	78000;78001;78002;78003;78004	105446;105447;105448;105449;105450;105451	105447			6	
ELSEQIQR	0	Unmodified	1001.5142	0.5141733	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	4.92	6	2				1	1			4	1	1	4	20.511	18.901	2	1.6178E-06	16517	160511_QHF_FH_JSI12i_1	147.52	67.922			0.87639	0.89771	24.299	8	2	Median	0.86466	0.71705	32.794	3	2	Plateau	0.71449	0.84611	NaN	1	0	Median	0.83243	0.81193	NaN	1	0	Median	0.88829	0.95247	24.759	3	0	Median	3039800000	1473400000	1566400000	675520000	290400000	385110000	759260000	452080000	307180000	778360000	338490000	439870000	826710000	392440000	434270000	12724	1073	12073	78005;78006;78007;78008;78009;78010;78011;78012;78013;78014	105452;105453;105454;105455;105456;105457;105458;105459;105460;105461;105462	105455			11	
ELSEVQSELDK	1	Unmodified	1275.6194	0.61942623	5761				yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	1	3	51.576	50.83	2	0.0029282	45259	160511_QHF_FH_JSI9i_1	56.432	14.323	+	+	0.90206	0.75515	23.844	7	2	Median	0.91497	0.74857	0	2	0	Median	0.65769	0.77155	NaN	1	0	Median	0.90206	0.87815	NaN	1	0	Median	0.71528	0.75515	37.031	3	2	Plateau	2003300000	1000500000	1002800000	622390000	273870000	348520000	358480000	193630000	164840000	340640000	155470000	185170000	681840000	377550000	304290000	12725	5761	12074	78015;78016;78017;78018;78019;78020;78021	105463;105464;105465;105466;105467;105468	105468			6	
ELSGLGSALK	1	Unmodified	973.54441	0.5444108	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.24	3.98	5	8	2				2			3	6	4	4	48.121	46.266	2	6.9178E-06	39821	160511_QHF_FH_JSI11i_2	109.44	46.893			1.716	1.6872	71.311	11	10	Median	1.3603	1.1639	78.009	3	3	Plateau	1.7549	2.0288	72.331	3	3	Median	2.2397	2.241	40.144	2	2	Median	0.58042	0.63219	80.441	3	2	Median	1944400000	834090000	1110300000	409060000	162880000	246170000	524820000	263110000	261710000	497080000	186840000	310240000	513400000	221250000	292150000	12726	1675	12075	78022;78023;78024;78025;78026;78027;78028;78029;78030;78031;78032;78033;78034;78035;78036;78037;78038	105469;105470;105471;105472;105473;105474;105475;105476;105477;105478;105479;105480;105481;105482;105483;105484;105485	105482			17	
ELSGTIK	1	Unmodified	746.41742	0.41741937	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.55	4	4	2				4			5	4	3	2	16.753	14.769	2	0.0012247	1262	160513_QHF_FH_JSI9Kac_4	86.472	17.297			0.66646	0.71924	37.848	12	3	Median	0.8342	0.93622	22.739	3	0	Plateau	0.47199	0.56678	59.698	4	2	Median	0.81013	0.81132	28.798	3	1	Plateau	0.58503	0.63966	21.252	2	0	Median	11661000000	6200100000	5461300000	2305700000	1029200000	1276600000	3387200000	1835400000	1551800000	2997900000	1797200000	1200700000	2970500000	1538300000	1432300000	12727	1340	12076	78039;78040;78041;78042;78043;78044;78045;78046;78047;78048;78049;78050;78051;78052	105486;105487;105488;105489;105490;105491;105492;105493;105494;105495;105496;105497;105498;105499;105500;105501;105502	105492			17	
ELSGWLR	0	Unmodified	859.4552	0.45520186	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.379	33.337	2	0.014353	29122	160511_QHF_FH_JSI9i_2	66.994	0			2.5415	2.1746	NaN	1	1	Median	2.5415	2.1746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299520000	114550000	184970000	299520000	114550000	184970000	0	0	0	0	0	0	0	0	0	12728	5268	12077	78053	105503	105503			1	
ELSHATIDSK	1	Unmodified	1099.551	0.55095274	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		4								2		2		13.488	12.974	2;3	8.4668E-06	10242	160511_QHF_FH_JSI11i_2	157.99	123.9			1.486	1.2567	59.023	3	2	Median	1.5058	1.2725	1.7684	2	1	Median	NaN	NaN	NaN	0	0	Median	0.45023	0.4579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	236530000	131410000	105120000	151770000	72842000	78929000	0	0	0	84763000	58570000	26193000	0	0	0	12729	5495	12078	78054;78055;78056;78057	105504;105505;105506;105507	105506			4	
ELSIAIR	0	Unmodified	800.4756	0.47560295	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	15.4	0.49								3	2		2	1	2	55.05	44.968	2	0.001155	22965	160513_QHF_FH_JSI10Kac_5	110.34	18.147			0.84231	1.0085	10.083	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83784	0.9996	1.2516	2	0	Median	1.0843	1.0782	NaN	1	0	Median	0.90489	0.98184	18.564	2	0	Median	65758000	34240000	31519000	0	0	0	30325000	15963000	14361000	17308000	9192000	8115900	18126000	9084200	9041700	12730	2094	12079	78058;78059;78060;78061;78062	105508	105508			1	
ELSIHFVPGSCR	0	Unmodified	1400.6871	0.68706906	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	54.795	54.125	2;3	0.00035824	47802	160511_QHF_FH_JSI11i_3	62.088	57.747			0.94452	1.2021	30.392	4	1	Linear	2.1759	1.8129	NaN	1	1	Median	1.0728	1.2657	NaN	1	0	Median	0.92211	0.86953	NaN	1	0	Median	1.1489	1.1418	NaN	1	0	Median	173840000	76754000	97084000	13406000	4621900	8783700	56411000	25825000	30586000	73953000	31004000	42949000	30068000	15303000	14765000	12731	5160	12080	78063;78064;78065;78066;78067	105509;105510;105511;105512;105513;105514;105515	105509			7	
ELSLAGNELGDEGAR	0	Unmodified	1529.7322	0.73216458	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.47	4	5				1				2	3	2	3	54.435	52.767	2	1.3166E-51	47779	160511_QHF_FH_JSI11i_1	256.47	240.33			0.66453	0.76962	59.244	10	5	Median	0.5968	0.50651	110.97	2	1	Median	0.58217	0.71078	33.947	3	2	Median	0.47508	0.45958	84.828	2	1	Median	0.75854	0.83333	53.854	3	1	Median	2241700000	1120700000	1121000000	482860000	217460000	265410000	632820000	330640000	302180000	588200000	298040000	290160000	537800000	274540000	263270000	12732	1029	12081	78068;78069;78070;78071;78072;78073;78074;78075;78076;78077	105516;105517;105518;105519;105520;105521;105522;105523;105524;105525;105526;105527;105528;105529;105530	105517			15	
ELSLDDPEVEQVSGR	0	Unmodified	1671.7952	0.79515877	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	60.416	59.693	2	7.1935E-07	54304	160511_QHF_FH_JSI12i_1	161.48	138.52			1.2141	1.1773	4.3496	6	6	Median	1.3965	1.1565	6.3282	2	2	Median	0.97968	1.146	NaN	1	1	Median	1.237	1.2173	NaN	1	1	Median	1.145	1.1668	5.6447	2	2	Median	521750000	227590000	294160000	156280000	59244000	97036000	92161000	42393000	49768000	100980000	43906000	57072000	172330000	82046000	90288000	12733	4417	12082	78078;78079;78080;78081;78082;78083	105531;105532;105533;105534;105535;105536	105533			6	
ELSNFYFSIIK	1	Unmodified	1359.7075	0.70745338	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.53		5	1						3	3	3	2	1	91.819	88.948	2	9.5021E-24	43410	160513_QHF_FH_JSI9Kac_6	177.78	116.13			0.92102	1.0448	85.21	9	5	Median	1.2341	1.0448	23.093	3	2	Median	0.79995	0.96865	7.3624	3	2	Plateau	0.34926	0.34902	174	2	1	Median	0.25771	0.2811	NaN	1	0	Median	1125500000	561470000	564010000	470110000	194980000	275130000	451840000	230110000	221730000	158140000	96780000	61364000	45394000	39603000	5790700	12734	4983	12083	78084;78085;78086;78087;78088;78089;78090;78091;78092	105537;105538;105539;105540;105541;105542;105543;105544;105545;105546;105547;105548;105549	105546			13	
ELSNSVSTYRPFGLGSESPYK	1	Unmodified	2317.1226	0.12264092	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		66.826	65.707	3	2.7006E-14	53829	160511_QHF_FH_JSI9i_3	124.26	104.44			0.99033	0.9259	12.832	4	3	Median	1.084	0.90448	20.366	2	2	Median	0.75459	0.87135	NaN	1	0	Median	1.0543	0.98386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132680000	60801000	71883000	40306000	18016000	22290000	41622000	25014000	16608000	50757000	17771000	32985000	0	0	0	12735	2984	12084	78093;78094;78095;78096	105550;105551;105552;105553;105554	105553			5	
ELSPDIAHLASLK	1	Unmodified	1392.7613	0.76127986	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	69.826	68.931	2;3	3.6398E-05	59413	160511_QHF_FH_JSI12i_2	83.692	68.592			0.88119	0.89916	13.913	7	3	Median	0.88903	0.76658	NaN	1	1	Median	0.68589	0.83385	3.2521	2	2	Median	0.89811	0.92528	4.0502	2	0	Median	0.9315	1.0369	18.574	2	0	Median	523020000	281340000	241670000	79582000	47117000	32465000	132130000	72708000	59426000	176020000	97210000	78805000	135290000	64307000	70979000	12736	3506	12085	78097;78098;78099;78100;78101;78102;78103;78104	105555;105556;105557;105558;105559;105560;105561;105562;105563;105564;105565;105566	105556			12	
ELSPVLTSEVHSVR	0	Unmodified	1551.8257	0.82567103	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	51.718	51.028	3	4.1144E-05	43971	160511_QHF_FH_JSI11i_2	93.243	85.699			1.0926	1.1115	23.364	6	3	Median	1.1366	0.9922	NaN	1	0	Median	0.57066	0.70853	NaN	1	1	Median	1.155	1.1247	6.214	2	1	Median	1.234	1.2807	15.493	2	1	Median	331690000	166320000	165380000	48750000	24272000	24478000	68759000	37566000	31193000	131780000	66258000	65521000	82403000	38220000	44183000	12737	5039	12086	78105;78106;78107;78108;78109;78110	105567;105568;105569;105570;105571;105572;105573;105574	105571			8	
ELSQDSTGR	0	Unmodified	991.45705	0.45705235	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	3	2	7.3672	4.4524	2	1.3024E-06	4566	160511_QHF_FH_JSI11i_1	133.23	111.1			1.0027	1.0387	9.2943	8	0	Median	1.2909	1.0506	NaN	1	0	Median	0.79918	0.95483	10.309	2	0	Median	1.1347	1.1241	8.3383	3	0	Median	0.92075	0.99447	12.933	2	0	Median	2826900000	1434900000	1392000000	661460000	320240000	341220000	634870000	339600000	295270000	807460000	401520000	405940000	723090000	373580000	349520000	12738	1784	12087	78111;78112;78113;78114;78115;78116;78117;78118	105575;105576;105577;105578;105579;105580;105581;105582;105583;105584;105585;105586	105576			12	
ELSQIEAELNK	1	Unmodified	1272.6561	0.65614609	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	57.799	57.216	2	3.7119E-06	51763	160511_QHF_FH_JSI11i_1	116.77	70.608			3.0838	2.5286	113.35	7	7	Median	3.0838	2.5286	NaN	1	1	Median	1.2461	1.4178	132.72	2	2	Median	1.2299	1.189	197.44	2	2	Median	1.4848	1.5237	128.92	2	2	Median	206020000	90333000	115690000	38466000	8300100	30166000	50205000	26655000	23550000	53013000	24354000	28660000	64338000	31025000	33313000	12739	2925	12088	78119;78120;78121;78122;78123;78124;78125	105587;105588;105589;105590;105591;105592;105593	105587			7	
ELSQNTDESGLNDEAIAK	1	Unmodified	1932.8912	0.891244	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.967	42.313	2	3.4351E-118	38143	160511_QHF_FH_JSI11i_1	280.97	246.21			0.91408	0.96047	13.143	4	0	Median	0.89557	0.7436	NaN	1	0	Median	0.82506	0.95505	NaN	1	0	Median	1.0071	0.97847	NaN	1	0	Median	0.93298	0.96593	NaN	1	0	Median	349690000	179580000	170110000	56939000	25669000	31270000	100140000	53356000	46786000	89863000	41627000	48236000	102740000	58925000	43817000	12740	1430	12089	78126;78127;78128;78129	105594;105595;105596;105597;105598;105599;105600;105601;105602	105594			9	
ELSSALTTPEMQK	1	Unmodified	1433.7072	0.70719538	5225	Q9P2W1	PSMC3IP	Homologous-pairing protein 2 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.763	48.348	2	6.0654E-07	43764	160511_QHF_FH_JSI11i_1	92.866	73.551			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12741	5225	12090	78130	105603	105603			1	
ELSSTVK	1	Unmodified	762.41233	0.41233399	1096	P16383	GCFC2	GC-rich sequence DNA-binding factor 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			20.113	19.85	2	0.031522	17084	160511_QHF_FH_JSI10i_1	51.572	6.8511			3.1614	3.7128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.1614	3.7128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96707000	25857000	70850000	0	0	0	96707000	25857000	70850000	0	0	0	0	0	0	12742	1096	12091	78131	105604	105604			1	
ELSSYEDFLDAR	0	Unmodified	1443.6518	0.65178899	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		72.594	72.259	2	0.013718	65729	160511_QHF_FH_JSI11i_1	66.056	40.497			0.83346	0.79752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83346	0.79752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21246000	12952000	8294600	0	0	0	0	0	0	21246000	12952000	8294600	0	0	0	12743	5334	12092	78132	105605	105605			1	
ELSTTLNADEAVTR	0	Unmodified	1518.7526	0.75256567	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.781	5	3	2							2	4	3	1	46.896	46.216	2	2.0681E-81	41636	160511_QHF_FH_JSI11i_1	250.51	204.51			0.95377	0.97938	1.5867	4	0	Median	1.1959	0.99002	NaN	1	0	Median	0.80379	0.97142	NaN	1	0	Median	0.98227	0.95679	NaN	1	0	Median	0.92609	0.9874	NaN	1	0	Median	2529500000	1325600000	1203900000	496170000	220210000	275960000	635820000	385390000	250430000	738720000	400880000	337840000	658820000	319160000	339650000	12744	1417	12093	78133;78134;78135;78136;78137;78138;78139;78140;78141;78142	105606;105607;105608;105609;105610;105611;105612;105613;105614;105615;105616;105617;105618;105619	105607			14	
ELSVEEQIK	1	Unmodified	1073.5605	0.56045479	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.113	37.786	2	0.001247	33996	160511_QHF_FH_JSI11i_1	78.377	41.676			0.29328	0.31516	11.703	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24419	0.29013	NaN	1	0	Median	0.35224	0.34235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	393600000	284670000	108930000	0	0	0	174690000	128940000	45757000	218910000	155740000	63172000	0	0	0	12745	5293	12094	78143;78144	105620;105621	105620			2	
ELSVLLLEMK	1	Unmodified	1173.6679	0.66789675	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.704	94.308	2	0.0010465	82843	160511_QHF_FH_JSI11i_2	73.233	50.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12746	2574	12095	78145	105622	105622			1	
ELSVRDVQATR	0	Unmodified	1272.6786	0.67861287	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				49.876	48.822	3	0.026455	42849	160511_QHF_FH_JSI9i_2	30.872	5.4863			6.5883	5.7486	NaN	1	1	Median	6.5883	5.7486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33597000	4664400	28932000	33597000	4664400	28932000	0	0	0	0	0	0	0	0	0	12747	3777	12096	78146	105623	105623			1	
ELSYMVVSR	0	Unmodified	1082.543	0.54303059	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.01	1	2					3	3	1	2	3	3	2	55.199	47.561	2	0.00022496	41103	160511_QHF_FH_JSI12i_2	100.25	56.973			1.2365	1.279	85.579	10	2	Median	0.79198	0.67396	49.182	2	1	Median	0.82898	1.0011	112.57	3	0	Median	5.9826	5.8951	93.633	3	0	Plateau	1.7145	1.8581	39.744	2	1	Median	559120000	176920000	382200000	21927000	10336000	11591000	173050000	66388000	106660000	130210000	24701000	105510000	233930000	75494000	158430000	12748	3173	12097	78147;78148;78149;78150;78151;78152;78153;78154;78155;78156	105624;105625;105626;105627;105628;105629;105630;105631;105632;105633;105634	105624			11	
ELTADARELK	1	Unmodified	1144.6088	0.60880197	1613	P48059	LIMS1	LIM and senescent cell antigen-like-containing domain protein 1	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				35.88	34.648	2	0.012893	30436	160511_QHF_FH_JSI9i_1	84.568	54.758			1.4721	1.2091	NaN	1	1	Median	1.4721	1.2091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108570000	47647000	60921000	108570000	47647000	60921000	0	0	0	0	0	0	0	0	0	12749	1613	12098	78157	105635	105635			1	
ELTAPDENIPAK	1	Unmodified	1296.6561	0.65614609	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	3	2	2	45.028	40.074	2	2.4299E-07	35859	160511_QHF_FH_JSI10i_1	130.94	91.918			0.981	0.93757	15.24	8	2	Median	1.1601	0.94077	NaN	1	0	Median	0.79142	0.91128	24.431	3	2	Median	0.93358	0.91072	3.6292	2	0	Median	1.0129	1.0955	1.4249	2	0	Median	1415500000	701070000	714480000	269050000	111780000	157260000	331710000	172200000	159510000	406080000	199220000	206860000	408700000	217860000	190840000	12750	998	12099	78158;78159;78160;78161;78162;78163;78164;78165	105636;105637;105638;105639;105640;105641;105642;105643;105644;105645;105646;105647	105642			12	
ELTASHATK	1	Unmodified	956.49271	0.49270958	3052	Q6IAN0	DHRS7B	Dehydrogenase/reductase SDR family member 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	6.0163	5.6104	2	5.1108E-05	3541	160511_QHF_FH_JSI12i_2	98.033	71.431			0.88305	0.92654	23.997	4	0	Median	1.4188	1.191	NaN	1	0	Median	0.5778	0.69525	NaN	1	0	Median	1.0308	1.0419	NaN	1	0	Median	0.7565	0.82393	NaN	1	0	Median	293770000	164130000	129640000	50002000	21297000	28705000	74044000	46481000	27563000	89153000	51553000	37600000	80568000	44799000	35770000	12751	3052	12100	78166;78167;78168;78169	105648;105649;105650;105651;105652;105653;105654	105648			7	
ELTAVVQK	1	Unmodified	886.51238	0.51238239	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.52	7	3	2			2	3			6	4	5	2	28.068	24.317	2	7.9628E-07	5973	160513_QHF_FH_JSI9Kac_3	138.9	68.627			1.0236	0.84178	105.85	17	16	Median	1.3981	1.1463	103.96	6	5	Median	0.71385	0.86644	116.09	4	4	Median	0.41107	0.40032	113.09	5	5	Median	1.1589	1.2302	175.17	2	2	Median	7468600000	3575000000	3893600000	915710000	486550000	429160000	2311600000	1001200000	1310400000	2541400000	1335100000	1206300000	1699900000	752170000	947720000	12752	1227	12101	78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185;78186	105655;105656;105657;105658;105659;105660;105661;105662;105663;105664;105665;105666;105667;105668;105669;105670;105671;105672;105673	105666			19	
ELTDEEAER	0	Unmodified	1090.4778	0.47784737	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	14.164	11.485	2	1.1056E-05	10061	160511_QHF_FH_JSI12i_1	122.13	61.225			1.0625	1.0575	17.33	6	3	Median	1.1599	0.96762	NaN	1	1	Median	1.0678	1.2652	NaN	1	1	Median	0.97624	0.95275	2.5155	2	1	Median	1.1952	1.2858	15.399	2	0	Median	916670000	378320000	538340000	205200000	80207000	124990000	217420000	89929000	127490000	282590000	117880000	164710000	211460000	90310000	121150000	12753	5497	12102	78187;78188;78189;78190;78191;78192	105674;105675;105676;105677;105678;105679	105675			6	
ELTDEEAERLQLEIDQKK	2	Unmodified	2186.1067	0.1066565	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	4	2	58.25	57.771	3;4	1.3792E-07	51147	160511_QHF_FH_JSI11i_3	117.26	103			0.94341	0.89599	16.564	10	4	Median	0.94341	0.80086	5.8332	2	0	Median	0.7179	0.89185	10.697	2	0	Median	1.0221	1.0037	17.971	4	2	Median	0.90103	0.90204	25.423	2	2	Median	1523600000	750250000	773340000	196820000	72576000	124250000	386340000	183310000	203030000	633520000	321790000	311730000	306900000	172580000	134330000	12754	5497	12103	78193;78194;78195;78196;78197;78198;78199;78200;78201;78202	105680;105681;105682;105683;105684;105685;105686;105687;105688;105689;105690;105691;105692;105693;105694;105695;105696	105683			17	
ELTEEEK	1	Unmodified	876.40764	0.40764254	3821	Q8WZ42	TTN	Titin	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	9.9987	7.2991	2	0.011062	6785	160511_QHF_FH_JSI12i_1	72.138	37.033			0.9268	0.96631	20.145	6	0	Median	1.1596	0.96964	NaN	1	0	Median	0.68764	0.81477	35.764	2	0	Median	0.88924	0.87901	12.907	2	0	Median	1.0368	1.076	NaN	1	0	Median	1718400000	790680000	927750000	339320000	156640000	182680000	425070000	208740000	216330000	432810000	188130000	244680000	521220000	237170000	284060000	12755	3821	12104	78203;78204;78205;78206;78207;78208	105697;105698;105699	105698			3	
ELTFCRK	1	Unmodified	952.48004	0.4800364	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				19.489	18.287	3	0.005436	14774	160511_QHF_FH_JSI9i_3	57.559	34.131			1.7636	1.4563	NaN	1	1	Median	1.7636	1.4563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41105000	13337000	27768000	41105000	13337000	27768000	0	0	0	0	0	0	0	0	0	12756	5689	12105	78209	105700	105700			1	
ELTGEDVLVR	0	Unmodified	1129.5979	0.59790293	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	48.221	47.454	2	9.427E-06	43199	160511_QHF_FH_JSI12i_1	105.4	60.949			1.1033	1.0421	27.749	3	0	Median	1.1033	0.91627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6034	1.5596	NaN	1	0	Median	0.99529	1.0421	NaN	1	0	Median	693210000	348200000	345020000	166180000	71165000	95014000	0	0	0	219270000	121280000	97993000	307760000	155750000	152010000	12757	2730	12106	78210;78211;78212	105701;105702;105703;105704;105705	105703			5	
ELTGIQQGFLPK	1	Unmodified	1329.7293	0.72925145	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	4.82	4	5					2			2	4	4	1	68.188	66.258	2	2.0132E-20	58903	160511_QHF_FH_JSI10i_2	144.28	112.86			0.92569	0.96128	15.118	8	4	Median	1.1506	0.96424	23.157	2	1	Median	0.76626	0.93614	19.243	2	2	Median	1.0116	1.0015	17.278	3	1	Plateau	0.99722	1.0357	NaN	1	0	Median	1091700000	512630000	579040000	237960000	92104000	145850000	296010000	168040000	127970000	406230000	188930000	217300000	151470000	63554000	87918000	12758	4326	12107	78213;78214;78215;78216;78217;78218;78219;78220;78221;78222;78223	105706;105707;105708;105709;105710;105711;105712;105713;105714;105715;105716;105717;105718;105719	105719			14	
ELTIDSIMNK	1	Unmodified	1162.5904	0.59037471	1408	P33981	TTK	Dual specificity protein kinase TTK	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.976	34.389	2	0.017273	31040	160511_QHF_FH_JSI12i_1	50.04	26.01			1.2909	1.363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2909	1.363	NaN	1	1	Median	324320000	135040000	189280000	0	0	0	0	0	0	0	0	0	324320000	135040000	189280000	12759	1408	12108	78224	105720	105720			1	
ELTIGSK	1	Unmodified	746.41742	0.41741937	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.89	7	6	5			3	3	1	2	8	7	5	7	22.534	18.956	2	3.8212E-05	5866	160513_QHF_FH_JSI9Kac_3	127.84	46.547			0.92213	0.92963	68.617	27	15	Median	0.936	0.78489	68.25	8	4	Median	0.83333	0.99265	62.721	7	3	Median	0.99609	0.98465	74.592	5	3	Median	0.82028	0.87642	82.902	7	5	Median	44035000000	22050000000	21985000000	9602700000	3860100000	5742500000	8812500000	5236200000	3576300000	13065000000	5851100000	7214000000	12555000000	7102200000	5452600000	12760	852	12109	78225;78226;78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242;78243;78244;78245;78246;78247;78248;78249;78250;78251	105721;105722;105723;105724;105725;105726;105727;105728;105729;105730;105731;105732;105733;105734;105735;105736;105737;105738;105739;105740;105741;105742;105743;105744;105745;105746;105747;105748;105749;105750;105751;105752;105753;105754;105755;105756;105757	105738			37	
ELTIGSKLQDAEIAR	1	Unmodified	1642.889	0.88899957	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			56.817	55.27	3	0.0016762	46220	160511_QHF_FH_JSI10i_3	62.378	46.833			0.37077	0.43487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37077	0.43487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25690000	18548000	7142700	0	0	0	25690000	18548000	7142700	0	0	0	0	0	0	12761	852	12110	78252	105758	105758			1	
ELTLLGK	1	Unmodified	772.46945	0.46945494	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	3	2	2	49.227	48.508	2	0.0095616	41527	160511_QHF_FH_JSI12i_2	78.616	30.442			1.339	1.5192	80.05	8	7	Median	3.5658	3.0118	NaN	1	1	Median	1.6012	1.863	96.071	3	3	Median	1.0521	1.0053	88.969	2	2	Median	0.76884	0.82456	57.582	2	1	Median	405210000	176260000	228950000	61245000	17682000	43563000	145840000	67590000	78251000	76455000	33404000	43051000	121670000	57582000	64089000	12762	2144	12111	78253;78254;78255;78256;78257;78258;78259;78260	105759;105760;105761;105762;105763;105764;105765;105766;105767	105762			9	
ELTLLGKPK	2	Unmodified	997.61718	0.61718181	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	38.831	38.283	3	0.014946	33527	160511_QHF_FH_JSI9i_2	45.161	37.781			1.1605	1.1949	110.75	8	8	Median	1.4834	1.2801	93.62	2	2	Median	0.70876	0.86767	129.13	2	2	Median	1.0784	1.0033	159.24	2	2	Median	0.98556	0.98498	182.96	2	2	Median	825210000	422470000	402740000	94455000	33197000	61257000	114530000	66729000	47801000	196320000	99933000	96383000	419910000	222610000	197300000	12763	2144	12112	78261;78262;78263;78264;78265;78266;78267;78268	105768;105769;105770;105771;105772;105773;105774;105775	105770			8	
ELTLLGKPK	2	Acetyl (K)	1039.6277	0.6277465	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		70.549	59.588	2	0.011976	32705	160513_QHF_FH_JSI11Kac_4	69.825	42.571			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1784000	1784000	0	0	0	0	0	0	0	1784000	1784000	0	0	0	0	12764	2144	12112	78269	105776	105776	2241		1	
ELTLPVDSTTLDGSK	1	Unmodified	1574.8039	0.80393254	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	70.412	69.924	2	0.00016319	63706	160511_QHF_FH_JSI12i_1	93.011	68.156			0.70057	0.68231	26.328	5	2	Median	0.85105	0.68231	NaN	1	0	Median	0.75097	0.86814	6.0332	2	2	Median	0.50421	0.48157	NaN	1	0	Median	0.53647	0.56311	NaN	1	0	Median	149850000	89340000	60513000	24735000	11805000	12930000	70869000	41862000	29007000	32878000	22865000	10013000	21372000	12809000	8563400	12765	3480	12113	78270;78271;78272;78273;78274	105777;105778;105779;105780;105781;105782;105783	105779			6	
ELTNDERK	1	Unmodified	1003.4934	0.49343786	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	5.2652	4.8825	3	0.014151	2784	160511_QHF_FH_JSI12i_2	30.797	16.794			1.0637	1.1201	1.5247	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.104	1.1081	NaN	1	0	Median	1.0249	1.1322	NaN	1	0	Median	207090000	84013000	123080000	0	0	0	0	0	0	129930000	47875000	82056000	77160000	36137000	41023000	12766	264	12114	78275;78276	105784	105784			1	
ELTNQQEASVER	0	Unmodified	1402.6688	0.66883604	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	20.91	17.436	2	3.8699E-31	14997	160511_QHF_FH_JSI12i_1	184.03	133.74			0.90212	0.96704	20.531	7	2	Median	1.2642	1.0464	NaN	1	0	Median	0.59043	0.70124	NaN	1	1	Median	0.82096	0.79406	32.992	2	1	Median	0.90212	0.92267	6.468	3	0	Plateau	414690000	220400000	194290000	88752000	42388000	46364000	82714000	45715000	36999000	108400000	61641000	46760000	134820000	70651000	64166000	12767	2516	12115	78277;78278;78279;78280;78281;78282;78283	105785;105786;105787;105788;105789;105790	105786			6	
ELTPQVVSAAR	0	Unmodified	1169.6404	0.64043645	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	3	2	41.606	38.888	2	2.7697E-09	35561	160511_QHF_FH_JSI12i_1	128.03	117.32			0.91759	0.94627	24.866	10	2	Median	1.2464	1.0462	6.9482	2	0	Median	0.7797	0.93911	28.926	3	1	Plateau	0.93134	0.89956	39.085	3	1	Plateau	0.83309	0.89831	5.7905	2	0	Median	2829000000	1458500000	1370500000	477450000	202860000	274590000	786320000	451420000	334900000	871980000	448160000	423830000	693280000	356050000	337220000	12768	1139	12116	78284;78285;78286;78287;78288;78289;78290;78291;78292;78293;78294	105791;105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805	105795			15	
ELTQIKQK	2	Acetyl (K)	1028.5866	0.58660996	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.259	25.423	2	0.046621	15129	160513_QHF_FH_JSI11Kac_3	65.252	20.171			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12769	882	12117	78295	105806	105806			1	
ELTSLVK	1	Unmodified	788.46437	0.46436956	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2			1	2	4	1	37.292	33.92	2	0.0094364	28811	160511_QHF_FH_JSI11i_2	68.915	25.849			0.58984	0.56343	73.715	7	6	Median	1.2867	1.1057	NaN	1	0	Median	0.30398	0.36426	42.591	2	2	Median	0.66176	0.64963	72.422	3	3	Median	0.26413	0.27315	NaN	1	1	Median	764100000	396880000	367220000	180140000	77393000	102750000	302570000	168350000	134220000	178760000	89517000	89243000	102630000	61621000	41011000	12770	130	12118	78296;78297;78298;78299;78300;78301;78302;78303	105807;105808;105809;105810;105811;105812;105813;105814	105813			8	
ELTSSGGPTK	1	Unmodified	975.48729	0.48728985	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	10.193	8.4323	2	1.1567E-05	6929	160511_QHF_FH_JSI11i_1	103.55	55.698			1.0507	1.0851	17.36	5	0	Median	1.0744	0.89848	NaN	1	0	Median	1.0134	1.204	NaN	1	0	Median	0.99973	0.99388	26.879	2	0	Median	1.0507	1.0851	NaN	1	0	Median	644460000	292710000	351750000	146990000	73681000	73309000	176230000	84723000	91507000	128690000	54124000	74567000	192550000	80185000	112370000	12771	4042	12119	78304;78305;78306;78307;78308	105815;105816;105817;105818;105819;105820;105821;105822;105823	105815			9	
ELTSTCSPIISK	1	Unmodified	1334.6752	0.67516697	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	45.049	40.513	2	1.4805E-22	36701	160511_QHF_FH_JSI12i_1	169.93	147.85			0.80875	0.95889	34.486	7	1	Median	0.78095	0.64503	NaN	1	0	Median	0.80875	0.95889	NaN	1	0	Median	0.70757	0.67684	42.78	3	1	Plateau	1.1804	1.2679	17.6	2	0	Median	1030500000	536910000	493590000	168230000	90417000	77808000	260440000	148090000	112350000	318910000	163650000	155260000	282930000	134760000	148170000	12772	1417	12120	78309;78310;78311;78312;78313;78314;78315	105824;105825;105826;105827;105828;105829;105830;105831;105832	105826			9	
ELTSTCSPIISKPK	2	Acetyl (K)	1601.8335	0.83345853	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		63.795	54.182	2	2.0995E-15	28257	160513_QHF_FH_JSI11Kac_3	142.07	121.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12773	1417	12121	78316	105833	105833	1379		1	
ELTSTCSPIISKPK	2	Unmodified	1559.8229	0.82289384	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	36.045	35.9	3	0.0079337	30470	160511_QHF_FH_JSI12i_3	49.265	37.651			0.7874	0.78366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7874	0.78366	NaN	1	1	Median	130390000	78549000	51837000	0	0	0	0	0	0	0	0	0	130390000	78549000	51837000	12774	1417	12121	78317	105834	105834			1	
ELTTEIDNNIEQISSYK	1	Unmodified	1995.9637	0.96368066	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				1	0	1									1				79.372	78.5	2	3.3586E-66	69798	160511_QHF_FH_JSI9i_1	278.97	241.54		+	0.46935	0.40408	NaN	1	0	Median	0.46935	0.40408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37065000	27352000	9713500	37065000	27352000	9713500	0	0	0	0	0	0	0	0	0	12775	56	12122	78318	105835;105836	105836			2	
ELTVSNNDINEAGVR	0	Unmodified	1629.7958	0.79582747	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.07	4	2				2				1	4	2	1	47.744	44.141	2	1.4881E-183	39872	160511_QHF_FH_JSI11i_1	315.11	262.63			0.94368	0.94864	6.9733	6	1	Median	1.1035	0.91367	NaN	1	0	Median	0.84991	1.0055	10.427	2	0	Median	1.0139	0.98279	8.4022	2	1	Median	0.92835	0.96351	NaN	1	0	Median	2348600000	1245100000	1103500000	520820000	250880000	269940000	597980000	371860000	226120000	709890000	362040000	347850000	519910000	260310000	259610000	12776	1029	12123	78319;78320;78321;78322;78323;78324;78325;78326	105837;105838;105839;105840;105841;105842;105843;105844;105845;105846;105847;105848;105849	105838			13	
ELTYQNTDLSEIK	1	Unmodified	1552.7621	0.76206772	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		55.928	55.523	2	0.00012273	50045	160511_QHF_FH_JSI10i_1	110.08	62.816			1.1831	1.2417	49.699	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77464	0.87375	NaN	1	1	Median	1.807	1.7645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84753000	46541000	38212000	0	0	0	30573000	19940000	10633000	54180000	26601000	27579000	0	0	0	12777	2804	12124	78327;78328	105850;105851	105851			2	
ELTYQNTDLSEIKEEEQVK	2	Unmodified	2295.1118	0.11180146	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	58.833	58.014	3	8.0871E-19	50867	160511_QHF_FH_JSI9i_2	166.76	141.56			0.89633	0.94393	17.678	6	4	Median	0.9776	0.81837	23.592	2	1	Median	0.91761	1.0877	NaN	1	1	Median	0.83408	0.82009	NaN	1	1	Median	0.93596	1.0068	12.523	2	1	Median	656630000	323180000	333450000	158400000	83372000	75032000	123700000	66760000	56943000	174620000	78455000	96163000	199900000	94594000	105310000	12778	2804	12125	78329;78330;78331;78332;78333;78334	105852;105853;105854;105855;105856;105857;105858;105859;105860	105860			9	
ELVAENLSVR	0	Unmodified	1128.6139	0.61388734	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.422	45.473	2	0.0022146	38934	160511_QHF_FH_JSI12i_2	72.607	15.43			1.1896	1.2552	0.56284	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2666	1.2602	NaN	1	0	Median	1.1172	1.2502	NaN	1	0	Median	131130000	47072000	84057000	0	0	0	0	0	0	60702000	21544000	39158000	70427000	25528000	44900000	12779	2690	12126	78335;78336	105861;105862;105863	105862			3	
ELVALMSAIR	0	Unmodified	1101.6216	0.62161526	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.87		5						2		2	1	2	2	79.704	76.099	2	1.6464E-06	68549	160511_QHF_FH_JSI11i_2	119.75	73.731			1.1276	0.92762	122.99	7	6	Median	2.3952	2.041	111.52	2	1	Median	0.61653	0.69686	NaN	1	1	Median	0.81334	0.81248	179.72	2	2	Median	0.8888	0.97337	184.87	2	2	Median	242270000	117380000	124890000	33039000	7357400	25681000	2102500	1328000	774540	133570000	72310000	61263000	73554000	36382000	37172000	12780	943	12127	78337;78338;78339;78340;78341;78342;78343	105864;105865;105866;105867;105868;105869;105870;105871	105870			8	
ELVALMSAIRDGETPDPEDPSRK	1	Unmodified	2525.2432	0.24316676	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				77.689	76.27	4	0.048766	62800	160511_QHF_FH_JSI9i_3	20.657	13.324			0.93779	0.76589	NaN	1	0	Median	0.93779	0.76589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29161000	15540000	13621000	29161000	15540000	13621000	0	0	0	0	0	0	0	0	0	12781	943	12128	78344	105872	105872			1	
ELVDYFLNVATAQGR	0	Unmodified	1694.8628	0.86278482	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	97.628	97.326	2	0.00011125	83721	160511_QHF_FH_JSI12i_2	100.19	82.82			0.53323	0.56911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53323	0.56911	NaN	1	0	Median	23153000	12828000	10325000	0	0	0	0	0	0	0	0	0	23153000	12828000	10325000	12782	163	12129	78345	105873	105873			1	
ELVEPLTPSGEAPNQALLR	0	Unmodified	2033.0793	0.079319539	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	76.063	75.58	2;3	3.4294E-24	68925	160511_QHF_FH_JSI12i_1	172.57	147.72			1.0198	0.87239	23.489	8	1	Median	1.0748	0.8695	4.0561	2	1	Median	0.7157	0.84447	1.0144	2	0	Median	1.1633	1.1172	18.118	2	0	Median	0.72797	0.76395	44.163	2	0	Median	364240000	180080000	184160000	87727000	35846000	51881000	84070000	44901000	39169000	94033000	41608000	52425000	98408000	57728000	40681000	12783	774	12130	78346;78347;78348;78349;78350;78351;78352;78353	105874;105875;105876;105877;105878;105879;105880;105881;105882	105877			9	
ELVEPVSR	0	Unmodified	927.50255	0.50254598	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	26.404	25.833	2	0.00087206	23024	160511_QHF_FH_JSI12i_1	97.093	46.127			0.87275	1.0433	11.732	4	0	Linear	1.3717	1.1158	NaN	1	0	Median	0.8077	0.97546	NaN	1	0	Median	0.95297	0.91626	NaN	1	0	Median	1.1381	1.1812	NaN	1	0	Median	2053500000	1083800000	969750000	290060000	132980000	157080000	656850000	374710000	282140000	601500000	321130000	280370000	505100000	254930000	250170000	12784	1675	12131	78354;78355;78356;78357;78358	105883;105884;105885;105886;105887;105888;105889	105885			7	
ELVEVIKK	2	Unmodified	956.59063	0.59063271	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		32.173	31.458	3	0.0090825	27598	160511_QHF_FH_JSI10i_2	43.083	12.916			2.8742	2.6931	7.9707	2	2	Median	2.8917	2.5455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8568	2.8493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48398000	15100000	33299000	16827000	6286000	10541000	0	0	0	31571000	8813500	22758000	0	0	0	12785	2549	12132	78359;78360;78361	105890;105891;105892	105892			3	
ELVGPPLAETVFTPK	1	Unmodified	1596.8763	0.87630962	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	88.499	87.964	2;3	3.9027E-05	77346	160511_QHF_FH_JSI11i_2	144.57	132.71			0.92639	0.90747	10.971	9	0	Median	1.1324	0.95604	8.979	2	0	Median	0.75058	0.88765	1.0019	2	0	Median	0.92639	0.92492	8.1294	3	0	Plateau	0.98779	1.0918	8.5374	2	0	Median	391180000	199720000	191470000	74766000	34126000	40640000	92520000	50474000	42046000	125350000	64381000	60968000	98549000	50734000	47815000	12786	1685	12133	78362;78363;78364;78365;78366;78367;78368;78369;78370;78371	105893;105894;105895;105896;105897;105898;105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911;105912	105908			20	
ELVHLYPR	0	Unmodified	1025.5658	0.56581494	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			39.967	39.001	3	0.015565	34322	160511_QHF_FH_JSI10i_2	52.716	38.713			0.67008	0.7935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67008	0.7935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15708000	9371100	6336600	0	0	0	15708000	9371100	6336600	0	0	0	0	0	0	12787	4889	12134	78372	105913	105913			1	
ELVIPLIQNGHR	0	Unmodified	1387.7936	0.79358305	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	68.125	67.757	3	2.2538E-05	58592	160511_QHF_FH_JSI12i_3	66.486	60.323			0.95774	0.98065	0.24654	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78983	0.97691	NaN	1	1	Median	1.012	0.98143	NaN	1	0	Median	0.95774	0.98065	NaN	1	0	Median	152360000	72303000	80056000	0	0	0	24646000	14677000	9968300	63774000	26627000	37147000	63938000	30998000	32940000	12788	3906	12135	78373;78374;78375	105914;105915;105916	105916			3	
ELVKLVDPGVK	2	Acetyl (K)	1237.7282	0.72818882	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		74.72	63.916	2	0.034769	34559	160513_QHF_FH_JSI11Kac_4	51.927	40.333			0.12839	0.11759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12839	0.11759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1564700	1470800	93966	0	0	0	0	0	0	1564700	1470800	93966	0	0	0	12789	1929	12136	78376	105917	105917			1	
ELVLALYDYQEK	1	Unmodified	1482.7606	0.76061116	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.491	79.313	2	0.00053195	68445	160511_QHF_FH_JSI12i_2	84.658	58.616			0.71576	0.76852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71576	0.76852	NaN	1	1	Median	17502000	7961200	9540500	0	0	0	0	0	0	0	0	0	17502000	7961200	9540500	12790	2470	12137	78377	105918	105918			1	
ELVLDNCK	1	Unmodified	989.48518	0.48518136	3871	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	4									1	2		1	29.109	28.491	2	0.00024112	25473	160511_QHF_FH_JSI12i_1	117.1	91.361			1.3563	1.5936	50.31	4	2	Median	0.89033	0.73036	NaN	1	0	Median	1.3563	1.5936	22.322	2	2	Median	NaN	NaN	NaN	0	0	Median	2.2195	2.3216	NaN	1	0	Median	487440000	215200000	272240000	47415000	28923000	18492000	284720000	123590000	161130000	0	0	0	155310000	62686000	92621000	12791	3871	12138	78378;78379;78380;78381	105919;105920;105921;105922	105919			4	
ELVLDNSR	0	Unmodified	944.49271	0.49270958	1487	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.7	4	4	2			3	3			4	4	4	4	29.633	25.584	2	2.0644E-06	22756	160511_QHF_FH_JSI10i_1	145.34	80.079			1.0074	0.98494	18.788	15	4	Median	1.0982	0.90638	17.95	3	2	Median	0.75212	0.89213	12.883	4	1	Median	0.95788	0.92617	19.729	4	1	Median	1.1038	1.2016	9.2786	4	0	Median	4971400000	2559300000	2412100000	945730000	449400000	496330000	1492300000	823570000	668690000	1205400000	668120000	537240000	1328000000	618210000	709820000	12792	1487	12139	78382;78383;78384;78385;78386;78387;78388;78389;78390;78391;78392;78393;78394;78395;78396;78397	105923;105924;105925;105926;105927;105928;105929;105930;105931;105932;105933;105934;105935;105936;105937;105938;105939;105940;105941;105942;105943;105944;105945	105933			23	
ELVLESNPK	1	Unmodified	1027.555	0.55497548	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.902	31.667	2	0.022401	28420	160511_QHF_FH_JSI11i_1	49.715	32.329			4.6121	4.4144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6121	4.4144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21332000	7376400	13956000	0	0	0	0	0	0	21332000	7376400	13956000	0	0	0	12793	3901	12140	78398	105946	105946			1	
ELVLLLLQWMR	0	Unmodified	1412.8214	0.8213777	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				100.2	91.04	2	1.4684E-11	52602	160513_QHF_FH_JSI9Kac_6	169.12	135.26			0.20909	0.18352	NaN	1	1	Median	0.20909	0.18352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78143000	64506000	13637000	78143000	64506000	13637000	0	0	0	0	0	0	0	0	0	12794	2636	12141	78399	105947	105947			1	
ELVLNGADTAVNK	1	Unmodified	1342.7092	0.70924429	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.093	45.441	2	0.00018235	41295	160511_QHF_FH_JSI12i_1	152.85	103.44			1.0725	1.0991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0725	1.0991	NaN	1	1	Median	58132000	29740000	28392000	0	0	0	0	0	0	0	0	0	58132000	29740000	28392000	12795	2884	12142	78400	105948	105948			1	
ELVNDDEDIDWVQTEK	1	Unmodified	1946.8745	0.8745313	1523	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	4										2		2	67.273	66.761	2	1.0271E-21	60449	160511_QHF_FH_JSI10i_1	135.37	112.45			0.64559	0.73545	19.988	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.64559	0.73545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99743	1.0095	11.414	2	2	Median	77034000	44260000	32774000	0	0	0	25881000	18490000	7391000	0	0	0	51154000	25771000	25383000	12796	1523	12143	78401;78402;78403;78404	105949;105950;105951;105952;105953	105953			5	
ELVNEWSLK	1	Unmodified	1116.5815	0.58152458	5594	Q9Y3E7	CHMP3	Charged multivesicular body protein 3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	57.833	56.884	2	0.00013229	49279	160511_QHF_FH_JSI11i_2	90.906	70.346			0.56151	0.62606	52.865	3	0	Median	0.34949	0.30096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84397	0.84012	NaN	1	0	Median	0.56151	0.62606	NaN	1	0	Median	256610000	131390000	125230000	44839000	23902000	20936000	0	0	0	87928000	46392000	41536000	123850000	61094000	62753000	12797	5594	12144	78405;78406;78407	105954;105955	105955			2	
ELVNFFK	1	Unmodified	895.48035	0.48035398	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	66.15	65.455	2	0.017776	56995	160511_QHF_FH_JSI11i_2	60.961	30.293			1.0344	1.1479	31.535	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1823	1.4346	NaN	1	0	Median	0.90497	0.91844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41038000	20652000	20385000	0	0	0	20927000	9766900	11160000	20111000	10886000	9225600	0	0	0	12798	2912	12145	78408;78409;78410	105956;105957;105958;105959	105957			4	
ELVNNLGEIYQK	1	Unmodified	1418.7405	0.74054442	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	60.492	59.889	2	5.9307E-11	54073	160511_QHF_FH_JSI10i_1	149.33	105.56			0.83295	0.7457	22.014	5	2	Median	0.83981	0.68693	NaN	1	0	Median	0.6388	0.7457	NaN	1	0	Median	0.93201	0.90004	36.316	2	2	Median	0.83295	0.87574	NaN	1	0	Median	546930000	270730000	276200000	91397000	39232000	52165000	114740000	64804000	49941000	218100000	102370000	115730000	122690000	64329000	58360000	12799	4727	12146	78411;78412;78413;78414;78415	105960;105961;105962;105963;105964;105965;105966;105967	105964			8	
ELVPPDTLHSLPK	1	Unmodified	1444.7926	0.79257999	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	57.786	56.853	3	0.00013919	49174	160511_QHF_FH_JSI11i_2	69.352	55.673			0.71549	0.72948	31.375	4	1	Median	0.64088	0.53706	NaN	1	1	Median	0.49565	0.60372	NaN	1	0	Median	1.0426	1.0472	NaN	1	0	Median	0.79879	0.88143	NaN	1	0	Median	357080000	217640000	139430000	74615000	48476000	26139000	90136000	62064000	28073000	108210000	55254000	52957000	84113000	51847000	32266000	12800	3900	12147	78416;78417;78418;78419	105968;105969;105970	105969			3	
ELVPSSDPIVFVVGAFAHGK	1	Unmodified	2068.0993	0.099326699	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		4	1						4	2	2	2	3	99.168	95.384	3	1.831E-34	49215	160513_QHF_FH_JSI9Kac_6	162.15	152.01			0.85505	0.91334	16.44	9	1	Median	1.0284	0.88586	4.3215	2	0	Median	0.81913	0.9967	7.1665	2	0	Median	0.78405	0.76925	6.3204	2	0	Median	0.868	0.91343	21.924	3	1	Median	4416500000	2230100000	2186400000	871000000	440990000	430010000	934460000	529610000	404860000	1420900000	690130000	730790000	1190100000	569380000	620730000	12801	3916	12148	78420;78421;78422;78423;78424;78425;78426;78427;78428	105971;105972;105973;105974;105975;105976;105977;105978;105979	105976			9	
ELVQDLLK	1	Unmodified	956.55425	0.5542472	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	61.908	61.057	2	0.020585	52437	160511_QHF_FH_JSI12i_2	45.68	24.981			0.56827	0.63906	31.991	2	1	Median	NaN	NaN	NaN	0	0	Median	0.43939	0.50968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73495	0.80128	NaN	1	0	Median	45122000	28644000	16478000	0	0	0	29156000	18379000	10776000	0	0	0	15967000	10265000	5701700	12802	700	12149	78429;78430	105980;105981	105980			2	
ELVQPFSSLFPK	1	Unmodified	1390.7497	0.74965254	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	4	1	96.107	95.857	2	5.6167E-06	84345	160511_QHF_FH_JSI11i_2	99.283	66.39			1.1679	1.2178	16.205	5	3	Median	1.5234	1.3393	29.672	2	2	Median	1.0411	1.293	NaN	1	0	Median	1.1679	1.1532	NaN	1	1	Median	1.1123	1.2178	NaN	1	0	Median	100150000	46699000	53456000	30107000	12525000	17582000	24204000	11866000	12339000	26484000	12068000	14416000	19359000	10240000	9119300	12803	3308	12150	78431;78432;78433;78434;78435;78436;78437;78438	105982;105983;105984;105985;105986;105987;105988;105989;105990;105991	105988			10	
ELVQQYHQFQCSR	0	Unmodified	1721.7944	0.79438768	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.25	6.76		1	1						2		3	1		32.948	32.948	3	1.5671E-05	28865	160511_QHF_FH_JSI10i_2	75.764	56.689			1.4806	1.3761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4806	1.3761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38473000	17123000	21350000	0	0	0	0	0	0	38473000	17123000	21350000	0	0	0	12804	5110	12151	78439;78440;78441;78442	105992;105993;105994;105995	105993			4	
ELVSCSNCTDYQAR	0	Unmodified	1701.7087	0.70866872	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	28.401	27.989	2	7.2461E-30	24820	160511_QHF_FH_JSI11i_1	189.57	168.8			1.0721	1.1367	17.385	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0546	1.2481	NaN	1	0	Median	1.0898	1.0353	NaN	1	0	Median	1.0662	1.1317	27.051	2	2	Median	199260000	100500000	98768000	0	0	0	52914000	27299000	25615000	62509000	29385000	33124000	83842000	43813000	40029000	12805	1667	12152	78443;78444;78445;78446	105996;105997;105998;105999;106000;106001;106002;106003	105997			8	
ELVSDANQHVK	1	Unmodified	1238.6255	0.62551466	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.75	8	8	8				3	2		7	9	7	6	16.576	14.486	2;3	1.4333E-47	12263	160511_QHF_FH_JSI9i_2	212.21	183.99			0.96799	0.97563	27.36	28	8	Median	1.2111	1.0179	24.068	6	1	Median	0.79545	0.94174	32.393	9	4	Median	1.007	0.97106	20.281	7	1	Median	0.89175	0.97457	34.291	6	2	Median	4232200000	2182100000	2050100000	864890000	362340000	502550000	1028100000	607250000	420860000	1358900000	630920000	728010000	980240000	581600000	398630000	12806	1345	12153	78447;78448;78449;78450;78451;78452;78453;78454;78455;78456;78457;78458;78459;78460;78461;78462;78463;78464;78465;78466;78467;78468;78469;78470;78471;78472;78473;78474;78475	106004;106005;106006;106007;106008;106009;106010;106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033;106034;106035;106036;106037;106038	106027			35	
ELVSGGR	0	Unmodified	716.3817	0.38170256	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	8.56	8.216	2	0.015518	6082	160511_QHF_FH_JSI12i_1	64.523	0			0.42335	0.48888	11.744	3	0	Median	NaN	NaN	NaN	0	0	Median	0.39571	0.48888	NaN	1	0	Median	0.42335	0.43493	NaN	1	0	Median	0.51357	0.55009	NaN	1	0	Median	984770000	671060000	313720000	0	0	0	220600000	160670000	59925000	498450000	337440000	161020000	265720000	172950000	92772000	12807	1411	12154	78476;78477;78478	106039	106039			1	
ELVSLKQEQQAFK	2	Acetyl (K)	1588.8461	0.84607213	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		73.236	62.354	2	0.038697	33896	160513_QHF_FH_JSI11Kac_4	60.434	18.098			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12808	2252	12155	78479	106040	106040			1	
ELVTIIPNFSLDK	1	Unmodified	1487.8235	0.82354577	5492	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		99.419	99.244	2	0.00011123	87093	160511_QHF_FH_JSI11i_2	111.06	84.938			0.93118	0.92406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93118	0.92406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29888000	13994000	15894000	0	0	0	0	0	0	29888000	13994000	15894000	0	0	0	12809	5492	12156	78480	106041	106041			1	
ELVTQQLPHLLK	1	Unmodified	1417.8293	0.82929985	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.65		8	5						2	2	2	6	5	68.294	66.396	2;3	1.03E-22	59026	160511_QHF_FH_JSI10i_2	201.75	185.08			1.0112	1.0636	18.131	14	3	Median	1.2788	1.0805	0.57703	2	0	Median	0.85387	1.0485	0.58992	2	0	Median	1.0556	1.0745	6.4636	5	2	Median	0.90028	0.99976	31.572	5	1	Median	4091400000	1893400000	2198000000	589190000	277710000	311480000	668900000	338210000	330680000	1570500000	629920000	940590000	1262800000	647550000	615290000	12810	4289	12157	78481;78482;78483;78484;78485;78486;78487;78488;78489;78490;78491;78492;78493;78494;78495	106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056;106057;106058;106059;106060;106061;106062;106063;106064;106065;106066;106067;106068;106069;106070;106071;106072;106073;106074;106075;106076;106077;106078	106071			37	
ELVTVLLQHR	0	Unmodified	1206.7085	0.70845643	4365	Q9BR61	ACBD6	Acyl-CoA-binding domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.65		2	4						5	3	3	3	2	63.124	59.009	3	6.3605E-10	52078	160511_QHF_FH_JSI11i_3	109.66	103.06			0.94643	1.0749	22.429	10	2	Median	1.4752	1.2175	27.075	3	1	Median	0.9013	1.0491	12.113	3	0	Plateau	1.0887	1.0448	26.407	2	1	Median	0.76514	0.79894	21.295	2	0	Median	339390000	181580000	157810000	62975000	29275000	33700000	104570000	56301000	48266000	106000000	55653000	50348000	65848000	40349000	25499000	12811	4365	12158	78496;78497;78498;78499;78500;78501;78502;78503;78504;78505;78506	106079;106080;106081;106082;106083;106084;106085;106086;106087;106088	106080			10	
ELVVTQLGYDTR	0	Unmodified	1392.7249	0.72489436	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.36	3	3	4			1	3	4	2	3	8	3	6	66.513	60.221	2	4.2768E-54	54663	160511_QHF_FH_JSI10i_1	224.58	188.24			0.90493	1.0311	45.026	14	2	Median	0.8737	0.73063	NaN	1	0	Median	0.93648	1.106	30.161	5	0	Median	1.1402	1.1185	6.2848	2	0	Median	0.75683	0.84884	60.076	6	2	Median	1814600000	1005200000	809350000	4226200	1762500	2463700	637860000	355290000	282570000	619540000	349040000	270490000	552930000	299110000	253830000	12812	2176	12159	78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519;78520;78521;78522;78523;78524;78525;78526	106089;106090;106091;106092;106093;106094;106095;106096;106097;106098;106099;106100;106101;106102;106103;106104;106105;106106;106107;106108;106109;106110;106111;106112;106113;106114;106115;106116	106102			28	
ELVYPPDYNPEGK	1	Unmodified	1519.7195	0.71947463	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.84	8					5				2	3	5	3	58.435	54.836	2;3	5.337E-22	49249	160511_QHF_FH_JSI10i_1	185.08	148.66			1.051	1.0174	23.16	12	3	Median	1.2222	1.0009	5.3632	2	1	Median	0.86912	1.0296	32.436	3	0	Median	1.0858	1.0526	29.801	4	2	Median	0.94878	1.0053	16.178	3	0	Median	3325200000	1703300000	1621800000	806960000	362280000	444680000	845940000	477990000	367950000	733240000	365530000	367710000	939030000	497520000	441510000	12813	1023	12160	78527;78528;78529;78530;78531;78532;78533;78534;78535;78536;78537;78538;78539	106117;106118;106119;106120;106121;106122;106123;106124;106125;106126;106127;106128;106129;106130;106131;106132;106133;106134;106135;106136;106137;106138;106139;106140;106141;106142;106143;106144;106145;106146;106147;106148;106149;106150;106151;106152;106153;106154;106155;106156;106157	106141			41	
ELWAVLNGWR	0	Unmodified	1242.6509	0.65094155	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	2	3	3	2	92.032	88.463	2	3.3694E-34	45562	160513_QHF_FH_JSI10Kac_6	193.86	159.77			0.93545	0.93288	42.584	10	6	Median	0.71519	0.62806	55.808	2	2	Median	0.57541	0.68614	30.954	3	2	Plateau	1.2519	1.2006	63.096	3	2	Median	0.93545	0.96544	6.0093	2	0	Median	2507500000	1279100000	1228400000	316010000	202620000	113400000	740680000	408370000	332320000	713280000	337230000	376050000	737520000	330910000	406610000	12814	1361	12161	78540;78541;78542;78543;78544;78545;78546;78547;78548;78549	106158;106159;106160;106161;106162;106163;106164;106165;106166;106167;106168;106169;106170;106171	106171			14	
ELWFSDDPNVTK	1	Unmodified	1449.6776	0.67760981	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	3	1	1	67.831	67.199	2	3.9802E-05	61138	160511_QHF_FH_JSI11i_1	125.74	82.295			0.94583	1.0155	36.916	5	2	Median	1.5384	1.2727	NaN	1	1	Median	0.58941	0.70615	53.464	2	1	Median	1.0102	0.98424	NaN	1	0	Median	0.94583	1.0155	NaN	1	0	Median	1475500000	759140000	716390000	196200000	68260000	127940000	492990000	308070000	184920000	385350000	177190000	208160000	400990000	205620000	195370000	12815	736	12162	78550;78551;78552;78553;78554;78555	106172;106173;106174;106175;106176;106177;106178;106179;106180	106173			9	
ELWLVIHGR	0	Unmodified	1121.6346	0.63456321	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.68		6	10						18	8	7	8	11	67.839	62.293	2;3	8.7301E-12	32387	160513_QHF_FH_JSI12Kac_6	143.28	128.14			0.83603	0.85877	86.033	29	22	Median	1.3276	1.0914	58.861	7	5	Median	0.71305	0.83524	62.333	6	4	Median	0.7618	0.71961	108.94	6	4	Median	0.77025	0.81368	106.95	10	9	Median	6291300000	2478300000	3813000000	850020000	363970000	486050000	2930400000	1170800000	1759500000	1308100000	467650000	840430000	1202800000	475800000	727020000	12816	307	12163	78556;78557;78558;78559;78560;78561;78562;78563;78564;78565;78566;78567;78568;78569;78570;78571;78572;78573;78574;78575;78576;78577;78578;78579;78580;78581;78582;78583;78584;78585;78586;78587;78588;78589	106181;106182;106183;106184;106185;106186;106187;106188;106189;106190;106191;106192;106193;106194;106195;106196;106197;106198;106199;106200;106201;106202;106203;106204;106205;106206;106207;106208;106209;106210;106211;106212;106213;106214;106215;106216;106217;106218;106219;106220;106221;106222;106223;106224;106225;106226	106216			44	
ELWSLLHFIMPEK	1	Unmodified	1641.8589	0.85888542	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.711	88.646	3	3.4626E-33	52543	160513_QHF_FH_JSI10Kac_6	187.57	149.89			0.67238	0.77438	39.623	3	1	Plateau	1.6913	1.4142	NaN	1	1	Median	0.67238	0.77438	NaN	1	0	Median	0.71091	0.66994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	468160000	240310000	227850000	134050000	48871000	85180000	182220000	110060000	72155000	151890000	81378000	70511000	0	0	0	12817	183	12164	78590;78591;78592	106227;106228;106229;106230	106230			4	
ELWTILLGR	0	Unmodified	1099.639	0.63897988	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.62		2	2						6	2	4	3	1	93.481	89.265	2	1.8522E-07	43337	160513_QHF_FH_JSI12Kac_6	138.54	95.298			0.70752	0.70733	31.218	8	5	Median	0.64549	0.55927	15.48	2	2	Median	0.43261	0.50934	30.154	3	1	Plateau	0.69705	0.67196	53.396	2	1	Median	0.88571	0.94298	NaN	1	1	Median	491660000	285020000	206640000	92662000	51866000	40796000	223720000	130530000	93191000	129810000	79397000	50410000	45469000	23228000	22241000	12818	2925	12165	78593;78594;78595;78596;78597;78598;78599;78600;78601;78602	106231;106232;106233;106234;106235;106236;106237;106238;106239;106240;106241;106242	106240			12	
ELYCLLLALLLAPSPR	0	Unmodified	1841.0485	0.048477103	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.33	95.611	2	4.846E-06	56449	160513_QHF_FH_JSI10Kac_6	155.42	132.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15111000	15111000	0	0	0	0	15111000	15111000	0	0	0	0	0	0	0	12819	3483	12166	78603	106243	106243			1	
ELYDFAK	1	Unmodified	884.42798	0.42798405	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.641	42.278	2	0.039053	38078	160511_QHF_FH_JSI11i_1	47.849	4.7251			1.3347	1.2741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3347	1.2741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153300000	63371000	89931000	0	0	0	0	0	0	153300000	63371000	89931000	0	0	0	12820	561	12167	78604	106244	106244			1	
ELYGQVLYR	0	Unmodified	1139.5975	0.597509	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.21	1	5						3		1	4	2	2	53.605	49.033	2	7.4215E-06	42483	160511_QHF_FH_JSI11i_2	127.68	62.433			1.1305	1.1719	16.525	8	1	Median	1.217	1.0248	NaN	1	0	Median	1.1109	1.3684	25.106	3	1	Plateau	1.0933	1.0794	16.855	2	0	Median	1.073	1.2106	9.8215	2	0	Median	503510000	256430000	247080000	75520000	25493000	50027000	136540000	73462000	63080000	156230000	75833000	80393000	135220000	81643000	53577000	12821	602	12168	78605;78606;78607;78608;78609;78610;78611;78612;78613	106245;106246;106247;106248;106249;106250;106251;106252;106253;106254;106255;106256;106257	106250			13	
ELYGSILQENPQVVYK	1	Unmodified	1878.9727	0.9727292	3995	Q96BW9	TAMM41	Phosphatidate cytidylyltransferase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	74.909	74.353	2	5.3632E-28	67715	160511_QHF_FH_JSI12i_1	153.63	141.76			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12822	3995	12169	78614;78615	106258;106259	106258			2	
ELYGVGVEK	1	Unmodified	992.51786	0.51786169	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	37.037	36.469	2	0.001212	32678	160511_QHF_FH_JSI10i_1	73.233	36.838			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12823	1506	12170	78616;78617;78618;78619;78620;78621	106260;106261;106262;106263;106264;106265	106264			6	
ELYIQHAK	1	Unmodified	1000.5342	0.53418046	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	2	2	1	18.188	17.455	2;3	0.00056348	14748	160511_QHF_FH_JSI10i_2	70.525	53.285			1.1942	1.1409	12.909	5	0	Median	1.243	1.0623	NaN	1	0	Median	0.87331	1.0768	8.1785	2	0	Median	1.316	1.3581	NaN	1	0	Median	1.1942	1.3205	NaN	1	0	Median	838300000	385750000	452550000	65670000	27249000	38421000	275020000	146280000	128740000	397040000	164600000	232440000	100570000	47625000	52948000	12824	2144	12171	78622;78623;78624;78625;78626;78627	106266;106267;106268;106269;106270;106271	106270			6	
ELYLEDSPLELK	1	Unmodified	1447.7446	0.74462675	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.589	81.119	2	9.0226E-06	73620	160511_QHF_FH_JSI10i_1	119.53	103.3			0.85086	0.8252	9.5569	4	0	Median	1.0699	0.8823	NaN	1	0	Median	0.63306	0.76476	NaN	1	0	Median	0.81894	0.7718	NaN	1	0	Median	0.88402	0.92496	NaN	1	0	Median	268280000	163750000	104530000	46558000	26874000	19684000	79757000	54717000	25040000	63136000	36930000	26205000	78832000	45233000	33598000	12825	3734	12172	78628;78629;78630;78631	106272;106273;106274;106275;106276;106277;106278;106279;106280	106278			9	
ELYLEEALQNER	0	Unmodified	1505.7362	0.73618733	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.711	71.425	2	0.0001786	61469	160511_QHF_FH_JSI12i_2	97.915	61.39			0.18111	0.20439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18111	0.20439	NaN	1	1	Median	91557000	80804000	10753000	0	0	0	0	0	0	0	0	0	91557000	80804000	10753000	12826	4995	12173	78632	106281;106282	106281			2	
ELYLFDVLR	0	Unmodified	1166.6336	0.63356015	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	7		3							3		1	3	2	101.3	101.18	2	0.00058425	44713	160513_QHF_FH_JSI12Kac_6	72.643	48.488			0.84764	0.93721	7.3074	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.66698	0.82166	NaN	1	0	Median	0.90828	0.92712	NaN	1	0	Median	0.84764	0.93731	NaN	1	0	Median	269410000	141460000	127960000	0	0	0	71135000	44823000	26312000	97745000	44435000	53309000	100530000	52198000	48337000	12827	900	12174	78633;78634;78635;78636;78637;78638	106283;106284;106285;106286;106287;106288	106288			6	
ELYLGLLYPTEDYK	1	Unmodified	1715.8658	0.86580451	5390	Q9UL33	TRAPPC2L	Trafficking protein particle complex subunit 2-like protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.132	97.83	2	0.00086285	84094	160511_QHF_FH_JSI12i_2	65.5	40.064			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12828	5390	12175	78639	106289	106289			1	
ELYLLFRPFK	1	Unmodified	1324.7543	0.75434399	3928;3185	Q6ZRY4;Q93062	RBPMS2;RBPMS	RNA-binding protein with multiple splicing 2;RNA-binding protein with multiple splicing	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.411	77.161	3	7.3542E-09	42633	160513_QHF_FH_JSI11Kac_6	120.99	109.12			0.45192	0.60028	12.399	4	3	Linear	0.59813	0.51219	NaN	1	1	Median	0.44015	0.51222	NaN	1	0	Median	0.41414	0.39494	NaN	1	1	Median	0.464	0.4876	NaN	1	1	Median	400720000	274470000	126250000	70757000	53881000	16876000	193780000	120580000	73200000	65380000	47684000	17696000	70796000	52320000	18476000	12829	3185;3928	12176	78640;78641;78642;78643	106290;106291;106292;106293;106294	106290			5	
ELYMMPR	0	Unmodified	938.43539	0.43539439	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	46.271	45.316	2	0.0082314	38957	160511_QHF_FH_JSI11i_2	84.359	47.772			0.98862	1.0257	10.166	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98862	1.2104	NaN	1	0	Median	1.0058	0.98879	NaN	1	0	Median	0.95363	1.0743	NaN	1	0	Median	134180000	66451000	67727000	0	0	0	35001000	17091000	17909000	50004000	24663000	25341000	49174000	24697000	24477000	12830	2678	12177	78644;78645;78646	106295;106296	106296			2	
ELYPVEFR	0	Unmodified	1051.5338	0.53384611	2875	Q5BJF2	TMEM97	Transmembrane protein 97	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.4	1	4						3		1	3	3	1	60.041	57.117	2	0.00049563	48969	160511_QHF_FH_JSI12i_2	106.36	69.262			1.0036	1.0012	8.7494	5	1	Median	1.0998	0.95197	NaN	1	0	Median	0.72058	0.89877	NaN	1	0	Median	1.0771	1.0748	8.0147	2	1	Median	0.88933	1.0012	NaN	1	0	Median	873470000	437290000	436180000	185180000	81941000	103240000	172090000	93164000	78929000	258470000	126860000	131610000	257730000	135320000	122410000	12831	2875	12178	78647;78648;78649;78650;78651;78652;78653;78654	106297;106298;106299;106300;106301;106302;106303;106304;106305;106306;106307;106308	106298			12	
ELYQLSK	1	Unmodified	879.47018	0.47018322	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.054	30.482	2	0.023109	27439	160511_QHF_FH_JSI12i_1	58.917	10.414			0.32229	0.34541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32229	0.34541	NaN	1	1	Median	44098000	30560000	13538000	0	0	0	0	0	0	0	0	0	44098000	30560000	13538000	12832	1694	12179	78655	106309	106309			1	
ELYTMMTDK	1	Unmodified	1130.4988	0.49878251	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	45.594	44.652	2	0.0067481	38404	160511_QHF_FH_JSI11i_2	62.823	52.836			1.948	2.0284	16.962	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2928	2.2868	NaN	1	1	Median	1.655	1.7991	NaN	1	1	Median	54296000	15366000	38930000	0	0	0	0	0	0	31591000	8055900	23535000	22705000	7309600	15395000	12833	1501	12180	78656;78657	106310;106311	106311			2	
ELYTVVQHVK	1	Unmodified	1214.6659	0.66592292	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	38.471	37.113	2	0.0019354	31623	160511_QHF_FH_JSI12i_2	66.692	43.952			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12834	3282	12181	78658	106312	106312			1	
EMAAMCLGLAHSLSR	0	Unmodified	1645.7739	0.77385193	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.639	63.496	3	0.023101	54888	160511_QHF_FH_JSI12i_3	27.85	23.302			0.61782	0.60538	3.8561	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68346	0.62212	NaN	1	0	Median	0.55849	0.5891	NaN	1	1	Median	54026000	30979000	23047000	0	0	0	0	0	0	32342000	17902000	14441000	21684000	13077000	8606800	12835	5544	12182	78659;78660	106313;106314	106314			2	
EMAATSAAIETATAR	0	Unmodified	1492.7192	0.71915705	118	O00291	HIP1	Huntingtin-interacting protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	44.112	43.6	2	3.513E-05	39659	160511_QHF_FH_JSI12i_1	117.79	93.762			0.33114	0.33058	78.811	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60773	0.57716	NaN	1	1	Median	0.18043	0.18934	NaN	1	1	Median	43685000	27653000	16033000	0	0	0	0	0	0	22991000	11228000	11763000	20694000	16425000	4269600	12836	118	12183	78661;78662	106315;106316	106316			2	
EMADRYDR	0	Unmodified	1054.4502	0.45019283	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		8.338	8.1006	2;3	0.03196	5835	160511_QHF_FH_JSI11i_3	67.981	47.422			0.76029	0.81855	13.536	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72892	0.90077	NaN	1	0	Median	0.79303	0.74383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132370000	66836000	65530000	0	0	0	89047000	42394000	46654000	43319000	24443000	18876000	0	0	0	12837	1126	12184	78663;78664	106317;106318	106317			2	
EMAEAFAGEIPK	1	Unmodified	1291.6118	0.61183843	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.704	59.063	2	5.9078E-07	53849	160511_QHF_FH_JSI12i_1	106.62	89.106			1.5734	1.6433	9.2951	3	3	Plateau	1.8137	1.4912	NaN	1	1	Median	1.365	1.6433	NaN	1	1	Median	1.8995	1.7957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	272520000	112930000	159590000	80528000	32841000	47687000	125860000	53453000	72408000	66130000	26635000	39496000	0	0	0	12838	635	12185	78665;78666;78667;78668	106319;106320;106321;106322	106320			4	
EMAEERAESLQQEVEALK	1	Unmodified	2088.9997	0.99974859	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	66.968	66.672	3	9.8494E-05	57725	160511_QHF_FH_JSI12i_3	67.646	57.988			0.36034	0.36031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36034	0.36031	NaN	1	0	Median	91955000	55464000	36491000	0	0	0	0	0	0	0	0	0	91955000	55464000	36491000	12839	2516	12186	78669	106323	106323			1	
EMAEEYDEK	1	Unmodified	1142.4438	0.44377005	4479	Q9BVM2	DPCD	Protein DPCD	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			16.18	15.931	2	0.0024809	13473	160511_QHF_FH_JSI10i_1	73.985	60.406			0.8512	0.99753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8512	0.99753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36083000	19091000	16992000	0	0	0	36083000	19091000	16992000	0	0	0	0	0	0	12840	4479	12187	78670	106324	106324			1	
EMAGDNK	1	Unmodified	763.31705	0.3170534	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	2	2	5	0.67909	0.35657	2	0.0089406	167	160511_QHF_FH_JSI12i_1	81.297	57.324			1.1183	1.0582	71.158	11	4	Median	0.74616	0.63534	47.248	3	1	Median	2.2017	2.5772	66.886	2	0	Median	0.73847	0.69606	59.244	2	1	Median	1.3321	1.3616	47.829	4	2	Median	566330000	270380000	295960000	80034000	47002000	33033000	123870000	36605000	87265000	113520000	64441000	49077000	248910000	122330000	126580000	12841	1480	12188	78671;78672;78673;78674;78675;78676;78677;78678;78679;78680;78681;78682	106325;106326;106327;106328;106329;106330;106331;106332;106333;106334;106335;106336;106337;106338;106339	106329			15	
EMAHGSQEAEAPGAVAGAAEVPREPPILPR	0	Unmodified	3036.5087	0.50871735	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								2	1			64.447	63.544	4	6.1196E-07	55828	160511_QHF_FH_JSI9i_2	61.112	58.231			0.85204	1.0525	8.8231	3	2	Plateau	1.259	1.0989	11.969	2	2	Median	0.85204	1.0525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156300000	78341000	77959000	74762000	40150000	34612000	81538000	38191000	43347000	0	0	0	0	0	0	12842	3404	12189	78683;78684;78685	106340;106341;106342	106340			3	
EMAIPVLEAR	0	Unmodified	1127.6009	0.60087982	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	1	1	3	69.891	68.973	2	0.00017566	60929	160511_QHF_FH_JSI9i_2	82.645	69.066			1.1775	1.0727	13.387	7	4	Median	1.2347	1.0562	2.1937	2	0	Median	0.79294	0.95713	NaN	1	0	Median	1.3095	1.3154	NaN	1	1	Median	1.0796	1.198	15.491	3	3	Median	849120000	393280000	455840000	198730000	82923000	115810000	120280000	66554000	53725000	198340000	71918000	126420000	331760000	171880000	159880000	12843	1837	12190	78686;78687;78688;78689;78690;78691;78692	106343;106344;106345;106346;106347;106348;106349;106350;106351	106348			9	
EMALLATSLPEGIMVK	1	Unmodified	1701.9045	0.90451498	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			100.91	100.84	2	0.00022348	89337	160511_QHF_FH_JSI10i_2	88.021	25.933			0.99927	1.2324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99927	1.2324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46889000	21775000	25114000	0	0	0	46889000	21775000	25114000	0	0	0	0	0	0	12844	4582	12191	78693	106352	106352			1	
EMAMLIAQALQTINYGRDDEK	1	Unmodified	2409.1668	0.16683069	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		95.662	88.102	3	3.7832E-16	49140	160513_QHF_FH_JSI11Kac_6	121.21	105.78			1.6451	1.7631	58.947	2	1	Median	NaN	NaN	NaN	0	0	Median	0.99045	1.1621	NaN	1	1	Median	2.7323	2.6748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	192290000	68301000	123990000	0	0	0	103970000	36613000	67359000	88320000	31688000	56632000	0	0	0	12845	193	12192	78694;78695	106353;106354	106353			2	
EMAPVPGTTTTTTSVK	1	Unmodified	1619.8076	0.80763771	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	40.308	39.823	2;3	4.5416E-07	36157	160511_QHF_FH_JSI12i_1	132.59	107.2			0.68353	0.67965	25.752	4	0	Median	NaN	NaN	NaN	0	0	Median	0.40691	0.45805	NaN	1	0	Median	0.65876	0.63581	NaN	1	0	Median	0.75045	0.77955	9.9635	2	0	Median	152200000	90598000	61604000	0	0	0	32592000	18911000	13682000	28798000	16587000	12210000	90812000	55100000	35712000	12846	482	12193	78696;78697;78698;78699	106355;106356;106357;106358	106356			3	
EMASGFSK	1	Unmodified	855.37965	0.37965365	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	16.879	16.373	2	0.0022782	13745	160511_QHF_FH_JSI10i_1	81.296	64.369			1.5935	1.7383	54.829	4	1	Median	2.301	1.9064	NaN	1	0	Median	1.6224	1.9276	NaN	1	0	Median	0.61505	0.60992	NaN	1	1	Median	1.5652	1.585	NaN	1	0	Median	562830000	251070000	311760000	141530000	45877000	95651000	178810000	70706000	108110000	63860000	40087000	23773000	178630000	94395000	84230000	12847	4180	12194	78700;78701;78702;78703	106359;106360;106361;106362;106363	106360			5	
EMASGVNTR	0	Unmodified	963.44438	0.44437918	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.8235	9.4568	2	0.0071402	7197	160511_QHF_FH_JSI10i_1	53.753	35.062			0.80835	0.82076	12.95	4	0	Median	1.1471	0.93875	NaN	1	0	Median	0.60258	0.72846	NaN	1	0	Median	0.92678	0.90266	NaN	1	0	Median	0.70506	0.7463	NaN	1	0	Median	239420000	140710000	98713000	35733000	18449000	17284000	66832000	41182000	25650000	86735000	46224000	40511000	50120000	34851000	15269000	12848	3926	12195	78704;78705;78706;78707	106364;106365;106366;106367;106368;106369	106368			6	
EMDDFLQK	1	Unmodified	1024.4535	0.45354688	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.967	46.287	2	0.0034061	41188	160511_QHF_FH_JSI9i_1	72.789	63.273			0.69	0.70302	23.497	4	1	Median	1.1422	0.91871	NaN	1	0	Median	0.44439	0.53537	NaN	1	1	Median	0.65527	0.6364	NaN	1	0	Median	0.72657	0.77662	NaN	1	0	Median	1081400000	570120000	511260000	259810000	114220000	145590000	269000000	135470000	133530000	291810000	183940000	107870000	260760000	136490000	124270000	12849	275	12196	78708;78709;78710;78711	106370;106371;106372;106373;106374;106375;106376;106377	106376			8	
EMDEAATAEER	0	Oxidation (M)	1266.5034	0.5034102	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	2	2	9.0677	6.4067	2	1.0393E-07	6075	160511_QHF_FH_JSI12i_1	125.75	95.492			1.0196	1.036	3.8911	6	0	Median	1.2393	1.0289	NaN	1	0	Median	0.84958	0.96966	NaN	1	0	Median	1.0974	1.0669	2.5843	2	0	Median	0.99299	1.0236	2.66	2	0	Median	347080000	171760000	175330000	57118000	25784000	31334000	119340000	61150000	58192000	76749000	34336000	42414000	93873000	50486000	43387000	12850	2217	12197	78712;78713;78714;78715;78716;78717	106378;106379;106380;106381;106382;106383;106384;106385;106386	106380		1843	9	
EMDEAATAEER	0	Unmodified	1250.5085	0.50849557	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	17.383	13.995	2	1.8454E-29	11961	160511_QHF_FH_JSI9i_1	185.29	150.91			1.0385	1.0232	10.173	7	0	Median	1.0385	0.85651	NaN	1	0	Median	0.8972	1.0622	10.008	2	0	Median	1.0921	1.0566	6.2632	2	0	Median	1.0205	1.0819	7.883	2	0	Median	2290300000	1078500000	1211800000	572820000	301790000	271030000	576820000	260540000	316280000	552750000	241960000	310790000	587880000	274200000	313670000	12851	2217	12197	78718;78719;78720;78721;78722;78723;78724	106387;106388;106389;106390;106391;106392;106393;106394;106395;106396;106397;106398;106399	106395			13	
EMDIVVHTLSTYPELNSSIK	1	Unmodified	2275.1406	0.14059917	2829	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.534	87.977	3	0.011592	77384	160511_QHF_FH_JSI11i_2	34.843	25.746			1.0048	0.98729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0048	0.98729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11790000	6061700	5728100	0	0	0	0	0	0	11790000	6061700	5728100	0	0	0	12852	2829	12198	78725	106400	106400			1	
EMDLVGLGLHPLFSSR	0	Unmodified	1769.9134	0.91344018	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.508	98.508	3	6.8742E-05	87755	160511_QHF_FH_JSI11i_3	71.143	63.734			1.1921	1.1003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1921	1.1003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90286000	31377000	58908000	0	0	0	0	0	0	90286000	31377000	58908000	0	0	0	12853	3720	12199	78726	106401	106401			1	
EMDNFLAQMEAK	1	Unmodified	1425.6268	0.62683657	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	74.38	73.786	2	1.8524E-07	64804	160511_QHF_FH_JSI11i_2	133.42	121.37			1.0336	1.0354	40.27	7	2	Median	0.77801	0.64899	75.372	2	1	Median	0.9474	1.1304	13.281	2	1	Median	1.0906	1.0739	5.1596	2	0	Median	0.78207	0.83615	NaN	1	0	Median	553620000	294350000	259270000	131080000	73778000	57303000	143640000	86923000	56713000	186430000	96337000	90092000	92477000	37314000	55164000	12854	3814	12200	78727;78728;78729;78730;78731;78732;78733	106402;106403;106404;106405;106406;106407	106405			6	
EMDRETLIDVAR	0	Oxidation (M)	1462.7086	0.70859237	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	1	1			By MS/MS	By MS/MS	11	5.66			1					2				2	1	44.004	37.111	3	0.0016906	32713	160511_QHF_FH_JSI11i_3	60.345	54.625			1.0803	1.0215	5.7963	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0906	1.0506	3.9726	2	0	Median	0.86563	0.96229	NaN	1	0	Median	123340000	61739000	61596000	0	0	0	0	0	0	119230000	59415000	59811000	4110100	2324800	1785200	12855	1494	12201	78734;78735;78736	106408;106409;106410;106411	106409		1176	4	
EMDRETLIDVAR	0	Unmodified	1446.7137	0.71367774	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.25	2	8	5					4		3	5	6	5	50.254	47.436	2;3	1.6438E-30	40581	160511_QHF_FH_JSI12i_3	189.13	155.17			0.90807	0.94009	12.086	19	0	Median	1.1342	0.95932	2.0771	3	0	Median	0.76524	0.92438	20.592	5	0	Median	0.9635	0.9306	6.5553	6	0	Median	0.84728	0.87523	10.074	5	0	Median	4973500000	2471700000	2501800000	775280000	365020000	410260000	1142100000	583290000	558810000	2236900000	1109500000	1127400000	819190000	413900000	405290000	12856	1494	12201	78737;78738;78739;78740;78741;78742;78743;78744;78745;78746;78747;78748;78749;78750;78751;78752;78753;78754;78755	106412;106413;106414;106415;106416;106417;106418;106419;106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430;106431;106432;106433;106434;106435;106436;106437;106438	106436			27	
EMDVVSQHK	1	Unmodified	1071.5019	0.50189405	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	13.908	13.26	2	0.00027266	10938	160511_QHF_FH_JSI10i_2	87.639	66.339			1.2521	1.3891	86.662	6	6	Median	1.673	1.4622	119.16	2	2	Median	1.3368	1.6595	NaN	1	1	Median	1.1728	1.1627	NaN	1	1	Median	1.0018	1.1221	148.09	2	2	Median	164600000	76068000	88528000	42664000	15619000	27045000	28028000	12342000	15686000	43750000	21894000	21856000	50154000	26213000	23941000	12857	3860	12202	78756;78757;78758;78759;78760;78761;78762	106439;106440;106441;106442;106443;106444;106445	106445			7	
EMDYETEVEMEK	1	Unmodified	1531.6058	0.60582636	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	48.322	47.783	2	1.1271E-06	43343	160511_QHF_FH_JSI11i_1	127.42	121.56			1.0317	1.0553	27.667	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88695	0.86782	NaN	1	0	Median	1.2001	1.2834	NaN	1	0	Median	177260000	82883000	94379000	0	0	0	0	0	0	84867000	36394000	48473000	92395000	46489000	45906000	12858	2303	12203	78763;78764	106446	106446			0	
EMEAELEDERK	1	Unmodified	1377.6082	0.60820962	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.575	9	11	1							6	4	6	5	22.368	21.655	2;3	9.4459E-08	18545	160511_QHF_FH_JSI10i_2	107.09	101.94			1.0745	1.1256	43.06	21	11	Median	1.3433	1.109	42.343	6	3	Median	1.034	1.2517	37.057	4	2	Median	0.98322	0.96958	53.041	6	3	Median	1.0745	1.1256	47.886	5	3	Median	4495500000	2166900000	2328600000	1033700000	477010000	556720000	937470000	472450000	465020000	1332200000	627720000	704460000	1192200000	589730000	602430000	12859	1436	12204	78765;78766;78767;78768;78769;78770;78771;78772;78773;78774;78775;78776;78777;78778;78779;78780;78781;78782;78783;78784;78785	106447;106448;106449;106450;106451;106452;106453;106454;106455;106456;106457;106458;106459;106460;106461;106462;106463;106464;106465;106466;106467;106468;106469;106470;106471;106472	106471			25	
EMEAELEDERK	1	Oxidation (M)	1393.6031	0.60312424	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	7	8								4	2	4	5	21.647	20.942	2;3	1.8254E-05	17770	160511_QHF_FH_JSI11i_2	94.538	88.696			0.98602	0.9347	50.688	14	3	Median	1.2047	0.98541	32.805	3	0	Median	0.73401	0.86808	2.9843	2	0	Median	1.1346	1.1056	57.268	4	1	Median	0.99224	1.0671	71.845	5	2	Median	736560000	357400000	379160000	151980000	60662000	91317000	104110000	55631000	48479000	260270000	134070000	126190000	220210000	107030000	113170000	12860	1436	12204	78786;78787;78788;78789;78790;78791;78792;78793;78794;78795;78796;78797;78798;78799;78800	106473;106474;106475;106476;106477;106478;106479;106480;106481;106482;106483;106484	106482		1096	11	
EMEEATASAQR	0	Unmodified	1221.5296	0.52956537	5199	Q9P253	VPS18	Vacuolar protein sorting-associated protein 18 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	4	2	3	12.118	11.617	2	0.00054996	8711	160511_QHF_FH_JSI12i_1	76.943	56.423			1.0066	1.0085	20.804	8	1	Median	1.173	0.95228	32.18	3	1	Median	0.93057	1.1031	15.714	2	0	Median	1.1774	1.1409	NaN	1	0	Median	0.88952	0.92653	15.027	2	0	Median	614550000	318100000	296450000	163690000	79152000	84542000	172560000	100100000	72466000	98293000	37037000	61256000	180000000	101810000	78189000	12861	5199	12205	78801;78802;78803;78804;78805;78806;78807;78808;78809;78810;78811;78812	106485;106486;106487;106488;106489;106490;106491;106492;106493;106494	106488			10	
EMEEELVPTGSEPGDTR	0	Unmodified	1874.8204	0.82038724	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	50.022	49.259	2	4.9286E-11	44691	160511_QHF_FH_JSI12i_1	150.68	140.63			1.0665	1.071	2.4418	3	0	Plateau	1.2898	1.071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0874	1.0391	NaN	1	0	Median	1.0665	1.0905	NaN	1	0	Median	151620000	71313000	80307000	45577000	22633000	22943000	0	0	0	48785000	22979000	25807000	57258000	25701000	31557000	12862	4581	12206	78813;78814;78815	106495;106496;106497;106498	106497			4	
EMEENFAVEAANYQDTIGR	0	Unmodified	2185.9586	0.95861206	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	72.607	72.094	2;3	6.6344E-184	65522	160511_QHF_FH_JSI11i_1	383.49	374.78			0.98047	1.1249	8.2014	8	0	Plateau	1.4634	1.1984	16.09	2	0	Median	0.98047	1.1342	0.24562	2	0	Median	1.116	1.0967	2.6706	2	0	Median	1.0584	1.0844	9.161	2	0	Median	929910000	439440000	490470000	144170000	59457000	84714000	331620000	164040000	167580000	220210000	108670000	111540000	233910000	107270000	126640000	12863	913	12207	78816;78817;78818;78819;78820;78821;78822;78823;78824	106499;106500;106501;106502;106503;106504;106505;106506;106507;106508;106509;106510;106511;106512;106513;106514;106515;106516	106499			18	
EMEENFAVEAANYQDTIGR	0	Oxidation (M)	2201.9535	0.95352668	913	P08670	VIM	Vimentin	yes	yes	0	0	1	0	By MS/MS	By MS/MS			1	0	2									1	1			66.28	65.608	2	1.5297E-23	59446	160511_QHF_FH_JSI10i_1	140.74	128.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12864	913	12207	78825;78826	106517;106518	106517		490	2	
EMEEPFEK	1	Unmodified	1037.4376	0.43756246	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	33.794	33.06	2	0.00021551	29773	160511_QHF_FH_JSI12i_1	119.27	109.29			0.94633	1.0822	37.318	5	1	Median	1.5009	1.2338	64.255	2	1	Median	0.91304	1.0822	NaN	1	0	Median	0.92089	0.88873	NaN	1	0	Median	1.4074	1.4851	NaN	1	0	Median	944880000	415660000	529220000	284660000	117770000	166890000	229380000	108210000	121170000	213380000	88695000	124690000	217450000	100990000	116460000	12865	1359	12208	78827;78828;78829;78830;78831	106519;106520;106521;106522;106523;106524;106525;106526;106527	106522			9	
EMEEQMR	0	Unmodified	951.379	0.37900173	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.669	10.42	2	0.014706	8020	160511_QHF_FH_JSI11i_1	65.803	48.418			1.4186	1.5185	20.062	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2039	1.4025	NaN	1	0	Median	1.6715	1.6314	NaN	1	0	Median	1.0461	1.0963	NaN	1	0	Median	882270000	394990000	487280000	0	0	0	339390000	160970000	178420000	342960000	123370000	219590000	199930000	110660000	89273000	12866	1222	12209	78832;78833;78834	106528;106529	106528			2	
EMEFPSSLTSTER	0	Unmodified	1512.6766	0.67662354	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	60.225	59.579	2	0.0006201	54180	160511_QHF_FH_JSI12i_1	85.958	73.745			1.3717	1.3449	20.239	5	4	Median	1.6198	1.3449	NaN	1	0	Median	1.3717	1.597	NaN	1	1	Median	1.4814	1.395	NaN	1	1	Median	1.0333	1.0489	16.137	2	2	Median	215120000	89336000	125780000	56938000	23713000	33225000	50420000	15776000	34644000	50877000	21994000	28884000	56884000	27854000	29030000	12867	4750	12210	78835;78836;78837;78838;78839	106530;106531;106532;106533;106534;106535	106531			6	
EMELELAQTK	1	Unmodified	1190.5853	0.58528933	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	no	no	0	0	0	0				By MS/MS	1	0	1												1	48.97	48.307	2	0.0005358	43909	160511_QHF_FH_JSI12i_1	87.298	73.303			0.9465	0.97331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9465	0.97331	NaN	1	1	Median	71927000	36096000	35831000	0	0	0	0	0	0	0	0	0	71927000	36096000	35831000	12868	5599	12211	78840	106536	106536			1	
EMEPLGWIHTQPNESPQLSPQDVTTHAK	1	Oxidation (M)	3185.5088	0.50877693	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	68.757	68.608	4	6.9397E-18	61044	160511_QHF_FH_JSI11i_3	101.59	99.008			1.0216	0.99533	8.2585	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1191	1.0552	NaN	1	0	Median	0.93267	0.93887	NaN	1	0	Median	106030000	56703000	49331000	0	0	0	0	0	0	59836000	29553000	30283000	46198000	27150000	19048000	12869	3101	12212	78841;78842	106537;106538;106539	106537		2191	3	
EMEPLGWIHTQPNESPQLSPQDVTTHAK	1	Unmodified	3169.5139	0.51386231	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	3	2	76.335	75.905	3;4	1.602E-32	67662	160511_QHF_FH_JSI11i_3	151.91	151.2			0.93537	0.99265	10.226	8	0	Median	1.1819	1.0077	NaN	1	0	Median	0.83189	1.0157	5.6815	2	0	Median	1.0998	1.0387	6.5002	3	0	Median	0.82979	0.84347	4.4252	2	0	Median	1618500000	803450000	815020000	156690000	62999000	93691000	346390000	192380000	154010000	565000000	259690000	305310000	550400000	288380000	262020000	12870	3101	12212	78843;78844;78845;78846;78847;78848;78849;78850;78851	106540;106541;106542;106543;106544;106545;106546;106547;106548;106549;106550;106551;106552;106553;106554;106555;106556;106557;106558;106559;106560;106561;106562;106563	106541			24	
EMEQFVK	1	Unmodified	909.4266	0.42660385	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	29.667	29.308	2	0.0062237	26091	160511_QHF_FH_JSI10i_1	92.467	26.795			1.6518	1.774	30.372	4	4	Median	NaN	NaN	NaN	0	0	Median	1.145	1.3423	38.702	2	2	Median	1.8341	1.7833	NaN	1	1	Median	1.9116	2.0164	NaN	1	1	Median	590660000	265840000	324830000	0	0	0	284890000	134780000	150110000	87116000	31152000	55964000	218660000	99909000	118750000	12871	5280	12213	78852;78853;78854;78855	106564;106565;106566;106567	106567			4	
EMEQLVLDK	1	Unmodified	1103.5533	0.55326092	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	48.548	47.82	2	2.2324E-06	42903	160511_QHF_FH_JSI10i_1	140.83	114.94			0.98745	1.0175	65.575	6	4	Median	1.2303	1.0272	117.88	2	2	Median	0.69246	0.81774	82.931	2	2	Median	1.0898	1.0761	NaN	1	0	Median	0.89473	0.96206	NaN	1	0	Median	2312200000	1171100000	1141100000	666420000	334250000	332170000	808850000	469620000	339230000	448920000	185790000	263130000	388010000	181440000	206570000	12872	3961	12214	78856;78857;78858;78859;78860;78861	106568;106569;106570;106571;106572;106573;106574;106575	106572			8	
EMEQQMQR	0	Unmodified	1078.4536	0.45356365	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.6803	9.3148	2	3.6318E-11	7249	160511_QHF_FH_JSI12i_1	169.06	144.17			1.0631	1.4038	20.296	4	0	Linear	1.0318	0.86293	NaN	1	0	Median	0.96559	1.1345	NaN	1	0	Median	1.0954	1.0644	NaN	1	0	Median	1.3406	1.4128	NaN	1	0	Median	435420000	196170000	239260000	78490000	43705000	34786000	114020000	45796000	68226000	98902000	46312000	52589000	144010000	60354000	83657000	12873	1704	12215	78862;78863;78864;78865	106576;106577;106578;106579;106580;106581;106582	106579			7	
EMEQSMNMLNSNHELPDVSEFMTR	0	Unmodified	2868.2187	0.21868462	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	92.025	91.446	3	8.1219E-22	80434	160511_QHF_FH_JSI11i_2	139.36	139.34			1.1732	1.1909	5.0665	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.001	1.2273	NaN	1	0	Median	1.1732	1.1686	NaN	1	0	Median	1.1862	1.2932	NaN	1	0	Median	129950000	56910000	73038000	0	0	0	45376000	20297000	25079000	46299000	22269000	24030000	38273000	14344000	23929000	12874	4892	12216	78866;78867;78868	106583;106584;106585;106586;106587;106588	106586			6	
EMESIDQYIER	0	Unmodified	1411.6289	0.62894506	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			60.598	59.85	2	0.0064421	53171	160511_QHF_FH_JSI9i_1	52.167	37.96			1.0404	1.0256	5.4811	2	1	Median	1.2457	1.0661	NaN	1	0	Median	0.86899	0.98663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63806000	31081000	32725000	32249000	13774000	18476000	31556000	17307000	14249000	0	0	0	0	0	0	12875	4525	12217	78869;78870	106589;106590	106590			2	
EMESIWNLQK	1	Unmodified	1276.6122	0.61217279	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	13.9	0.875						4	2	3		2	3	2	2	68.489	57.779	2	2.1216E-12	34284	160513_QHF_FH_JSI12Kac_4	157.68	146.85			1.0912	1.0378	24.149	9	0	Median	1.3052	0.90209	10.709	2	0	Median	1.0027	1.1955	31.104	3	0	Median	1.0979	1.0602	3.0134	2	0	Median	1.0591	1.1542	29.826	2	0	Median	104450000	50850000	53603000	12705000	5516700	7188500	47352000	22933000	24419000	12785000	7904400	4880500	31611000	14497000	17115000	12876	3264	12218	78871;78872;78873;78874;78875;78876;78877;78878;78879	106591;106592;106593;106594;106595;106596;106597	106595			6	
EMESIWNLQK	1	Oxidation (M)	1292.6071	0.60708741	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	14.1	0.833						2	2	3			2	2	3	63.693	53.289	2	0.0061924	26729	160513_QHF_FH_JSI10Kac_5	58.676	53.893			1.047	1.0155	32.988	7	1	Median	NaN	NaN	NaN	0	0	Median	0.92032	1.0961	31.914	2	0	Median	1.0691	1.0435	3.8479	2	0	Median	0.80981	0.91316	52.046	3	1	Median	75011000	35127000	39884000	0	0	0	23642000	11891000	11751000	15867000	6426000	9440600	35503000	16810000	18692000	12877	3264	12218	78880;78881;78882;78883;78884;78885;78886	106598;106599;106600;106601;106602	106602		2235	5	
EMETLEDHPVFNPAMK	1	Unmodified	1886.8543	0.85427033	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		61.501	60.816	3	0.036664	53787	160511_QHF_FH_JSI10i_2	24.832	12.686			1.0579	1.1765	26.419	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1579	1.4181	NaN	1	0	Median	0.96657	0.97599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	252350000	125230000	127120000	0	0	0	83274000	48157000	35117000	169080000	77072000	92003000	0	0	0	12878	3267	12219	78887;78888	106603	106603			1	
EMFDDVSYDK	1	Unmodified	1247.5016	0.50161928	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.966	45.472	2	0.0082838	40870	160511_QHF_FH_JSI10i_1	60.102	46.725			1.0122	0.94775	5.07	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.86667	1.0143	NaN	1	1	Median	1.0221	0.94775	NaN	1	1	Median	0.85157	0.91849	NaN	1	1	Median	161640000	76518000	85121000	0	0	0	56567000	23915000	32652000	68402000	32022000	36380000	36670000	20582000	16088000	12879	5142	12220	78889;78890;78891	106604;106605;106606	106606			3	
EMFEDTVEER	0	Oxidation (M)	1299.5289	0.52889667	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				4	2	3	3	33.42	29.276	2	4.6517E-05	34186	160511_QHF_FH_JSI9i_1	114.51	87.259			1.0248	1.0588	38.84	12	2	Median	1.4034	1.1168	46.738	4	1	Median	0.82023	0.97087	23.559	2	0	Median	1.6789	1.65	39.472	3	0	Plateau	0.86072	0.94675	29.014	3	1	Median	826610000	403410000	423210000	374200000	174290000	199900000	77876000	39133000	38744000	173800000	74573000	99230000	200740000	115410000	85330000	12880	2741	12221	78892;78893;78894;78895;78896;78897;78898;78899;78900;78901;78902;78903	106607;106608;106609;106610;106611;106612;106613;106614;106615;106616;106617;106618;106619;106620	106618		2120	13	
EMFEDTVEER	0	Unmodified	1283.534	0.53398204	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.47	5	4				3	1			3	5	2	3	41.437	38.467	2	3.7578E-19	34933	160511_QHF_FH_JSI12i_1	178.22	164.64			0.94966	1.0568	19.249	12	3	Median	1.2798	1.0848	38.633	3	1	Median	0.87265	1.0383	7.3912	4	2	Median	0.92987	0.9025	17.62	2	0	Median	1.0169	1.1172	4.088	3	0	Median	7381800000	3637700000	3744100000	2307500000	1122400000	1185100000	1695300000	933500000	761750000	1655700000	731530000	924120000	1723400000	850330000	873110000	12881	2741	12221	78904;78905;78906;78907;78908;78909;78910;78911;78912;78913;78914;78915;78916	106621;106622;106623;106624;106625;106626;106627;106628;106629;106630;106631;106632;106633;106634;106635;106636;106637;106638;106639;106640	106626			19	
EMFGGFFK	1	Unmodified	961.43677	0.4367746	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.996	72.366	2	0.0019709	62655	160511_QHF_FH_JSI12i_3	83.614	71.709			1.0701	1.129	16.569	6	2	Median	1.095	0.95556	NaN	1	0	Median	1.0458	1.2806	NaN	1	1	Median	1.0535	1.061	25.298	2	1	Median	1.0452	1.129	16.246	2	0	Median	412840000	206490000	206350000	48758000	23763000	24995000	83297000	46408000	36889000	140600000	72061000	68535000	140190000	64253000	75935000	12882	5687	12222	78917;78918;78919;78920;78921;78922	106641;106642;106643;106644;106645;106646;106647;106648;106649;106650;106651;106652;106653	106652			13	
EMFGLYGQTTGK	1	Unmodified	1330.6227	0.62273747	5716	Q9Y6B6	SAR1B	GTP-binding protein SAR1b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		1	3	2	2	55.086	54.331	2	1.5855E-07	46580	160511_QHF_FH_JSI12i_2	134.57	129.08			1.0981	1.2107	18.439	7	3	Median	1.0757	0.92038	NaN	1	0	Median	1.0407	1.2565	5.2548	2	1	Median	1.333	1.3082	22.512	2	1	Median	1.2545	1.3249	21.68	2	1	Median	489010000	222440000	266580000	66151000	34623000	31528000	94055000	45862000	48193000	215180000	93574000	121600000	113630000	48379000	65255000	12883	5716	12223	78923;78924;78925;78926;78927;78928;78929;78930	106654;106655;106656;106657;106658;106659;106660;106661;106662;106663;106664	106656			11	
EMFLDYR	0	Unmodified	972.4375	0.43750288	5546	Q9Y2Y0	ARL2BP	ADP-ribosylation factor-like protein 2-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.431	53.47	2	0.013862	46275	160511_QHF_FH_JSI11i_2	68.787	48.505			0.72944	0.90708	9.8287	4	2	Linear	1.0124	0.86016	NaN	1	1	Median	0.64244	0.78615	NaN	1	0	Median	0.97893	0.96895	NaN	1	1	Median	0.88911	0.95656	NaN	1	0	Median	130490000	69825000	60668000	21739000	10550000	11189000	32875000	16663000	16211000	43994000	23856000	20138000	31885000	18756000	13129000	12884	5546	12224	78931;78932;78933;78934	106665;106666;106667;106668	106667			4	
EMFLEDILR	0	Unmodified	1164.5849	0.5848954	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	96.698	96.412	2	0.0016808	84460	160511_QHF_FH_JSI11i_2	67.993	43.838			0.81175	0.91563	12.9	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71607	0.91563	NaN	1	0	Median	0.81175	0.77854	NaN	1	0	Median	0.924	1.0045	NaN	1	0	Median	39700000	21852000	17847000	0	0	0	12304000	7060400	5244000	14894000	7552300	7341700	12501000	7239700	5261600	12885	4750	12225	78935;78936;78937	106669;106670;106671	106670			3	
EMFNLFQVTDNR	0	Unmodified	1512.7031	0.70311306	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	86.812	86.025	2	9.7738E-05	74410	160511_QHF_FH_JSI12i_2	84.658	55.931			1.0424	1.0702	6.3417	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0839	1.0233	NaN	1	1	Median	1.0025	1.1193	NaN	1	0	Median	25016000	11614000	13402000	0	0	0	0	0	0	16061000	7724700	8336200	8955000	3889300	5065700	12886	4413	12226	78938;78939;78940	106672;106673;106674	106672			2	
EMFNPMYALFR	0	Unmodified	1417.6523	0.65226346	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	101.59	101.47	2	7.8618E-06	89208	160511_QHF_FH_JSI11i_2	109.48	84.959			1.2537	1.2431	16.967	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72342	0.88679	NaN	1	0	Median	1.2537	1.2431	NaN	1	0	Median	0.98476	1.0798	NaN	1	0	Median	558000000	294730000	263270000	0	0	0	162420000	90805000	71620000	212670000	103980000	108690000	182910000	99950000	82956000	12887	3290	12227	78941;78942;78943	106675;106676	106676			2	
EMFNYAR	0	Unmodified	929.40654	0.40653711	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	31.249	30.543	2	0.0040196	25872	160511_QHF_FH_JSI11i_2	100.74	52.238			0.99264	1.0692	4.8505	6	0	Median	1.3237	1.1525	NaN	1	0	Median	0.89178	1.0692	1.6374	2	0	Median	1.0328	1.0154	1.5715	2	0	Median	0.97144	1.0881	NaN	1	0	Median	1167200000	536490000	630760000	275090000	101360000	173730000	269610000	136850000	132750000	348580000	167420000	181160000	273970000	130860000	143110000	12888	2006	12228	78944;78945;78946;78947;78948;78949	106677;106678;106679;106680;106681;106682;106683	106681			7	
EMFPYEASTPTGISASCR	0	Unmodified	2002.8765	0.87646233	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	65.002	64.317	2;3	2.2122E-11	56108	160511_QHF_FH_JSI11i_2	164.88	151.22			0.79232	0.88767	20.183	6	0	Median	NaN	NaN	NaN	0	0	Median	0.73845	0.89853	3.9469	2	0	Median	0.75569	0.74839	26.367	2	0	Median	0.93605	0.98191	23.64	2	0	Median	395380000	243570000	151800000	0	0	0	94911000	55955000	38956000	180440000	121250000	59200000	120020000	66374000	53647000	12889	1527	12229	78950;78951;78952;78953;78954;78955	106684;106685;106686;106687;106688;106689;106690;106691;106692;106693	106691			10	
EMGDHLVK	1	Unmodified	927.4484	0.44840192	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	16.811	15.187	2;3	0.00037738	12872	160511_QHF_FH_JSI10i_2	79.906	61.176			1.0757	1.2218	35.731	9	0	Median	2.5899	2.2134	32.902	2	0	Median	1.132	1.3863	6.1623	2	0	Median	0.88275	0.90021	7.4436	3	0	Plateau	1.046	1.1726	5.809	2	0	Median	3562700000	1728600000	1834100000	503490000	189520000	313970000	816110000	409380000	406740000	1170500000	545580000	624950000	1072500000	584100000	488440000	12890	1395	12230	78956;78957;78958;78959;78960;78961;78962;78963;78964	106694;106695;106696;106697;106698;106699;106700;106701;106702;106703	106702			10	
EMGDHLVK	1	Oxidation (M)	943.44332	0.44331654	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	1	0	By matching			By MS/MS	8.5	6.5		2						2		1			3	14.278	10.619	3	0.0062704	12453	160511_QHF_FH_JSI12i_2	43.808	34.594			1.0796	1.0519	61.175	3	1	Plateau	0.73895	0.62308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94946	1.0393	75.762	2	1	Median	229590000	114830000	114760000	75777000	44024000	31752000	0	0	0	0	0	0	153810000	70805000	83008000	12891	1395	12230	78965;78966;78967;78968	106704;106705;106706	106704		1043	3	
EMGDHLVKHGDGVK	2	Acetyl (K)	1562.7511	0.75112588	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									5		2	3		32.658	23.738	2;3;4	1.4595E-05	13360	160513_QHF_FH_JSI11Kac_6	100.45	87.827			0.51672	0.55111	107.62	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1988	1.4278	18.794	2	0	Median	0.23606	0.22425	11.338	2	0	Median	NaN	NaN	NaN	0	0	Median	81351000	60624000	20727000	0	0	0	20478000	9605100	10873000	60873000	51019000	9853900	0	0	0	12892	1395	12231	78969;78970;78971;78972;78973	106707;106708;106709;106710;106711;106712;106713	106708	1350		7	
EMGEAFAADIPR	0	Unmodified	1305.6023	0.60233638	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.25	0.433	3	1								1		1	2	61.485	60.803	2	1.5158E-05	55436	160511_QHF_FH_JSI12i_1	93.477	74.206			0.81465	0.7851	11.017	3	3	Plateau	1.0155	0.86297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72165	0.71426	NaN	1	1	Median	0.81465	0.86585	NaN	1	1	Median	303070000	183310000	119760000	76346000	36439000	39907000	0	0	0	135380000	89821000	45559000	91346000	57047000	34298000	12893	726	12232	78974;78975;78976;78977	106714;106715;106716;106717	106716			4	
EMGFTNMTEIQHK	1	Unmodified	1564.7014	0.7013985	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	49.262	48.287	2;3	2.8692E-06	41386	160511_QHF_FH_JSI12i_2	121.9	97.045			0.75654	0.81177	30.767	6	2	Median	1.0166	0.86919	NaN	1	0	Median	0.65409	0.80109	NaN	1	0	Median	1.0702	1.0768	41.615	2	1	Median	0.6107	0.67458	27.835	2	1	Median	477080000	279160000	197920000	88151000	53904000	34247000	86209000	47963000	38246000	170780000	95138000	75641000	131940000	82155000	49787000	12894	5042	12233	78978;78979;78980;78981;78982;78983	106718;106719;106720;106721;106722;106723	106719			5	
EMGGHHIVALCVLK	1	Unmodified	1562.8061	0.80613834	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	3	3	3	5	57.139	51.249	2;3;4	0.00010428	27804	160513_QHF_FH_JSI11Kac_6	81.431	68.451			1.0312	0.99095	37.236	13	4	Median	1.3098	1.1076	0.038129	2	0	Median	0.72169	0.84525	4.8718	3	0	Median	1.0155	0.98217	39.636	3	1	Median	1.2394	1.2587	41.931	5	3	Median	631470000	283160000	348310000	44059000	20010000	24049000	167300000	85587000	81716000	155550000	75730000	79820000	264560000	101840000	162720000	12895	772	12234	78984;78985;78986;78987;78988;78989;78990;78991;78992;78993;78994;78995;78996;78997	106724;106725;106726;106727;106728;106729;106730;106731;106732;106733;106734;106735;106736;106737;106738;106739	106727			15	
EMGGHHIVALCVLK	1	Oxidation (M)	1578.8011	0.80105296	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		53.985	44.256	4	0.0067761	24022	160513_QHF_FH_JSI11Kac_6	39.424	27.448			1.1359	1.1018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1359	1.1018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5632700	2326000	3306700	0	0	0	0	0	0	5632700	2326000	3306700	0	0	0	12896	772	12234	78998	106740	106740		277	1	
EMGIIPSWGGTTR	0	Unmodified	1403.6867	0.68673471	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			71.09	70.305	2	2.7511E-05	62475	160511_QHF_FH_JSI10i_2	82.417	64.552			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12897	4995	12235	78999	106741	106741			1	
EMGIPLGPR	0	Unmodified	968.51134	0.51133653	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.494	51.102	2	0.023243	43583	160511_QHF_FH_JSI12i_2	41.652	27.981			1.0753	1.1853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0753	1.1853	NaN	1	0	Median	59114000	32220000	26894000	0	0	0	0	0	0	0	0	0	59114000	32220000	26894000	12898	5755	12236	79000	106742	106742			1	
EMGLSLQWLYSAR	0	Unmodified	1552.7708	0.77079869	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	95.889	92.518	2	1.6642E-62	45306	160513_QHF_FH_JSI11Kac_6	218.62	182.1			1.0331	1.0127	5.2658	10	0	Median	1.1713	1.0127	1.8394	2	0	Median	0.79219	0.94589	6.602	2	0	Median	1.087	1.0484	0.89081	3	0	Median	0.9279	0.96672	6.2759	3	0	Plateau	1918800000	965830000	952990000	404720000	186830000	217890000	762930000	439870000	323060000	391260000	156490000	234780000	359900000	182640000	177270000	12899	793	12237	79001;79002;79003;79004;79005;79006;79007;79008;79009;79010	106743;106744;106745;106746;106747;106748;106749;106750;106751;106752;106753;106754;106755;106756;106757;106758	106746			16	
EMGLSLQWLYSAR	0	Oxidation (M)	1568.7657	0.76571331	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	85.02	77.127	2	1.2538E-50	41970	160513_QHF_FH_JSI9Kac_6	206.58	177.62			0.79561	0.87954	20.65	3	0	Plateau	1.3262	1.1257	NaN	1	0	Median	0.65709	0.75744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96333	1.0213	NaN	1	0	Median	452940000	246230000	206710000	95590000	45594000	49996000	180400000	104650000	75753000	0	0	0	176950000	95988000	80960000	12900	793	12237	79011;79012;79013;79014;79015	106759;106760;106761;106762;106763;106764;106765;106766	106761		308	8	
EMGQMQVLQMK	1	Unmodified	1321.6192	0.61924877	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.093	55.737	2	1.8009E-13	47762	160511_QHF_FH_JSI12i_2	132.01	119.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12901	3896	12238	79016	106767	106767			1	
EMGTPDVR	0	Unmodified	903.41202	0.41201641	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.78	4	3	2			3	3			2	6	3	4	21.328	17.381	2	5.7917E-05	15342	160511_QHF_FH_JSI12i_1	134.81	106.7			1.3135	1.0967	12.363	11	2	Linear	1.5428	1.2951	NaN	1	0	Median	0.96962	1.1571	18.455	4	1	Median	1.094	1.0742	8.7321	2	0	Median	0.99051	1.0946	4.4321	4	1	Median	7960100000	3569900000	4390200000	1778900000	649060000	1129900000	1804900000	869700000	935210000	2372200000	1083600000	1288500000	2004100000	967500000	1036600000	12902	2035	12239	79017;79018;79019;79020;79021;79022;79023;79024;79025;79026;79027;79028;79029;79030;79031	106768;106769;106770;106771;106772;106773;106774;106775;106776;106777;106778;106779;106780;106781;106782;106783;106784;106785;106786;106787;106788;106789;106790;106791	106772			24	
EMGTPDVR	0	Oxidation (M)	919.40693	0.40693104	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.96	6	1				2	2			1	2	3	5	13.795	10.889	2	0.00032884	4977	160513_QHF_FH_JSI12Kac_3	113.89	86.768			0.98305	1.0616	23.4	11	1	Median	0.97846	0.80828	NaN	1	0	Median	1.0208	1.2019	4.0656	2	0	Median	1.0908	1.0647	6.1398	3	0	Median	0.9084	0.97878	28.821	5	1	Median	2351500000	1197800000	1153700000	25708000	12547000	13160000	831470000	429110000	402360000	520080000	249540000	270530000	974260000	506570000	467690000	12903	2035	12239	79032;79033;79034;79035;79036;79037;79038;79039;79040;79041;79042	106792;106793;106794;106795;106796;106797;106798;106799;106800;106801;106802;106803;106804;106805	106803		1693	14	
EMGVDVHFPK	1	Unmodified	1157.5539	0.55392962	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.163	50.183	3	4.6766E-05	43900	160511_QHF_FH_JSI9i_2	78.136	71.832			1.0036	0.99847	7.6455	4	1	Median	1.0714	0.91701	NaN	1	0	Median	0.78829	0.94558	NaN	1	0	Median	1.0402	1.0543	NaN	1	1	Median	0.96821	1.0674	NaN	1	0	Median	723940000	366540000	357400000	119310000	55344000	63971000	150100000	84207000	65892000	256980000	122110000	134870000	197540000	104870000	92667000	12904	2286	12240	79043;79044;79045;79046	106806;106807;106808;106809;106810;106811;106812;106813	106809			8	
EMGVDVHFPK	1	Oxidation (M)	1173.5488	0.54884425	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		38.879	38.058	3	0.016934	33220	160511_QHF_FH_JSI9i_2	41.54	31.885			1.2814	1.3877	28.756	3	1	Plateau	0.98222	0.86371	NaN	1	1	Median	1.0656	1.2689	NaN	1	0	Median	1.5408	1.516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49080000	23745000	25335000	12978000	6172900	6805300	18030000	9640800	8388900	18072000	7930800	10141000	0	0	0	12905	2286	12240	79047;79048;79049	106814;106815;106816	106814		1884	2	
EMGVFMYISNR	0	2 Oxidation (M)	1377.6057	0.6057072	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	2	0	By MS/MS				15	0								1		1				65.138	54.462	2	0.0036723	28494	160513_QHF_FH_JSI9Kac_5	50.353	43.225			1.5551	1.3004	NaN	1	0	Median	1.5551	1.3004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4395500	1858600	2536900	4395500	1858600	2536900	0	0	0	0	0	0	0	0	0	12906	140	12241	79050	106817	106817		61;62	1	
EMGVFMYISNR	0	Oxidation (M)	1361.6108	0.61079258	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	74.984	66.803	2	4.7064E-05	34804	160513_QHF_FH_JSI12Kac_6	97.456	90.483			0.96221	1.0993	15.451	3	1	Plateau	0.96221	0.83631	NaN	1	0	Median	0.70719	0.85242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0689	1.1028	NaN	1	0	Median	55524000	30592000	24932000	13318000	7477900	5840200	21995000	14352000	7642900	0	0	0	20211000	8762300	11449000	12907	140	12241	79051;79052;79053	106818;106819;106820	106819		61;62	3	
EMGVFMYISNR	0	Unmodified	1345.6159	0.61587795	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.941	73.193	2	0.00010246	39948	160513_QHF_FH_JSI10Kac_6	91.855	73.543			0.72469	0.83991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72469	0.83991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51327000	26931000	24396000	0	0	0	51327000	26931000	24396000	0	0	0	0	0	0	12908	140	12241	79054	106821	106821			1	
EMGVIAAMR	0	Unmodified	976.48341	0.48340722	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	3	1	2	46.353	45.499	2	0.00017913	39890	160511_QHF_FH_JSI9i_2	86.794	68.758			1.1795	1.2106	69.513	6	5	Median	1.0555	0.90044	NaN	1	0	Median	0.76172	0.93952	77.71	2	2	Median	1.8664	1.8875	NaN	1	1	Median	0.96771	1.0283	119.32	2	2	Median	1069000000	576230000	492780000	156070000	72908000	83162000	373300000	217820000	155480000	252350000	131530000	120820000	287290000	153970000	133320000	12909	543	12242	79055;79056;79057;79058;79059;79060;79061	106822;106823;106824;106825;106826;106827;106828;106829	106825			8	
EMHFHPK	1	Unmodified	924.42761	0.4276069	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	9.3723	9.4698	2;3	0.025149	6857	160511_QHF_FH_JSI12i_3	57.559	46.191			1.1176	1.1148	0.0095402	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1176	1.1148	0.0095402	2	1	Median	221110000	103330000	117780000	0	0	0	0	0	0	0	0	0	221110000	103330000	117780000	12910	1002	12243	79062;79063	106830;106831	106831			2	
EMIAQQR	0	Unmodified	874.43309	0.43308621	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	10.714	10.277	2	0.018633	8058	160511_QHF_FH_JSI10i_1	59.609	42.645			0.88646	0.95305	1.4466	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81025	0.94491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90408	0.96685	0.81939	2	0	Median	265380000	149960000	115420000	0	0	0	121830000	67601000	54228000	0	0	0	143550000	82359000	61189000	12911	588	12244	79064;79065;79066	106832;106833	106833			2	
EMIDIYSTREPQLAFHQR	0	Unmodified	2233.095	0.094986378	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		2	6							3	5			66.179	64.765	3;4	3.1769E-05	54422	160511_QHF_FH_JSI10i_3	72.433	67.566			1.1421	1.2224	39.58	7	4	Median	1.5646	1.2506	45.846	3	1	Median	0.92107	1.0688	28.332	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	297240000	129020000	168220000	104540000	35031000	69506000	192700000	93986000	98713000	0	0	0	0	0	0	12912	313	12245	79067;79068;79069;79070;79071;79072;79073;79074	106834;106835;106836;106837;106838;106839;106840;106841;106842	106835			9	
EMIKSGMNVAR	1	Acetyl (K)	1276.6268	0.62677699	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	49.582	39.138	2	0.0013055	23021	160513_QHF_FH_JSI11Kac_4	83	68.702			0.35472	0.35241	69.621	3	1	Median	NaN	NaN	NaN	0	0	Median	0.98866	1.1517	NaN	1	0	Median	0.35472	0.35241	NaN	1	0	Median	0.31059	0.33785	NaN	1	1	Median	43624000	29049000	14576000	0	0	0	10406000	4966100	5440400	29165000	20627000	8538100	4053000	3455800	597270	12913	1055	12246	79075;79076;79077	106843;106844;106845;106846	106845	883		4	
EMILNPEGDVNSAK	1	Unmodified	1515.7239	0.72390808	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	51.395	50.774	2	3.4475E-06	45948	160511_QHF_FH_JSI11i_1	131.17	123.61			1.1264	0.93888	33.029	5	4	Median	1.1264	0.93888	NaN	1	1	Median	0.62547	0.7343	NaN	1	0	Median	0.8423	0.81823	49.43	2	2	Median	1.2368	1.292	NaN	1	1	Median	855640000	464210000	391430000	164800000	76480000	88321000	194220000	116550000	77677000	331940000	187680000	144260000	164680000	83506000	81171000	12914	4996	12247	79078;79079;79080;79081;79082	106847;106848;106849;106850;106851	106848			5	
EMIPFAVVGSDHEYQVNGK	1	Unmodified	2119.0044	0.004440036	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.574	72.705	3	8.8299E-05	64500	160511_QHF_FH_JSI10i_2	78.088	68.682			0.77575	0.82028	14.05	4	4	Median	0.80015	0.68665	NaN	1	1	Median	0.7521	0.89509	NaN	1	1	Median	0.75111	0.75173	NaN	1	1	Median	0.80272	0.9207	NaN	1	1	Median	219510000	114840000	104660000	37993000	22205000	15789000	50438000	27883000	22555000	83284000	41092000	42193000	47789000	23661000	24128000	12915	5298	12248	79083;79084;79085;79086	106852;106853;106854;106855	106855			4	
EMIQHCVNANIDEAYK	1	Unmodified	1933.8662	0.866232	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.61	44.219	3	0.00024568	37836	160511_QHF_FH_JSI12i_2	58.073	41.193			1.3064	1.4287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3064	1.4287	NaN	1	0	Median	33282000	11903000	21379000	0	0	0	0	0	0	0	0	0	33282000	11903000	21379000	12916	1429	12249	79087	106856	106856			1	
EMKPPTSQEEWEAEFQR	1	Unmodified	2120.9473	0.94731909	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	59.564	58.906	3	1.3894E-12	50858	160511_QHF_FH_JSI12i_3	124.29	116.2			1.0492	1.0475	10.139	6	0	Median	1.1335	0.97911	NaN	1	0	Median	0.88993	1.0832	NaN	1	0	Median	1.1588	1.115	13.564	2	0	Median	0.96734	0.99882	12.246	2	0	Median	402690000	189730000	212960000	43070000	16649000	26422000	84657000	42054000	42603000	155670000	75818000	79854000	119290000	55214000	64079000	12917	3215	12250	79088;79089;79090;79091;79092;79093;79094;79095	106857;106858;106859;106860;106861;106862;106863;106864;106865;106866;106867;106868;106869;106870	106870			14	
EMKPVIFLDVFLPR	1	Unmodified	1702.948	0.94803478	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	2	2	98.831	94.166	3	2.6599E-15	88573	160511_QHF_FH_JSI12i_3	142.97	125.47			0.98821	0.98886	11.67	6	0	Median	1.3286	1.141	NaN	1	0	Median	0.85527	0.96183	NaN	1	0	Median	1.1815	1.1119	12.663	2	0	Median	0.88523	0.92155	2.556	2	0	Median	1064000000	548150000	515890000	73241000	34404000	38837000	141660000	74292000	67372000	277070000	136800000	140270000	572060000	302650000	269400000	12918	2094	12251	79096;79097;79098;79099;79100;79101	106871;106872;106873;106874;106875;106876;106877;106878;106879	106877			7	
EMKPVIFLDVFLPR	1	Oxidation (M)	1718.9429	0.9429494	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1		By matching	By matching	By MS/MS	1.75	0.829	2	1	1								1	1	2	101.19	101.12	3	0.023577	87939	160511_QHF_FH_JSI12i_3	51.405	49.091			1.3217	1.3748	24.845	4	0	Median	NaN	NaN	NaN	0	0	Median	0.82986	1.0325	NaN	1	0	Median	1.938	1.8837	NaN	1	0	Median	1.3217	1.3748	6.512	2	0	Median	228780000	104660000	124110000	0	0	0	68282000	34217000	34065000	17498000	7522200	9975800	143000000	62925000	80074000	12919	2094	12251	79102;79103;79104;79105	106880	106880			0	
EMLAAACQMFLGK	1	Unmodified	1468.6877	0.68766269	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.395	82.3	2	0.0056372	71195	160511_QHF_FH_JSI12i_2	61.593	51.64			0.8574	0.92519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8574	0.92519	NaN	1	1	Median	14412000	8348300	6063300	0	0	0	0	0	0	0	0	0	14412000	8348300	6063300	12920	590	12252	79106	106881	106881			1	
EMLAAALR	0	Unmodified	873.47422	0.47422274	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	42.077	41.113	2	0.0062018	36206	160511_QHF_FH_JSI10i_2	63.301	54.061			0.75323	0.80267	9.8371	4	0	Median	1.0299	0.87651	NaN	1	0	Median	0.59602	0.72881	NaN	1	0	Median	0.72705	0.74288	NaN	1	0	Median	0.78036	0.86728	NaN	1	0	Median	428640000	242830000	185810000	82540000	33380000	49160000	83523000	50597000	32926000	163110000	97420000	65685000	99471000	61433000	38038000	12921	1220	12253	79107;79108;79109;79110	106882	106882			1	
EMLAVDAPR	0	Unmodified	1000.5012	0.50116577	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5.33	6.13	2						1				1		2	41.762	38.028	2	0.0040865	34278	160511_QHF_FH_JSI10i_1	68.371	45.351			3.0989	3.6526	40.016	3	2	Plateau	NaN	NaN	NaN	0	0	Median	3.0989	3.6526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4263	2.5823	49.001	2	1	Median	499910000	160930000	338990000	0	0	0	256250000	89759000	166490000	0	0	0	243670000	71171000	172500000	12922	1060	12254	79111;79112;79113	106883;106884;106885	106884			3	
EMLAVSVLAAVR	0	Unmodified	1257.7115	0.7114929	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.701	90.007	2	0.00057604	79116	160511_QHF_FH_JSI11i_2	72.006	52.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12923	5097	12255	79114;79115	106886;106887	106887			2	
EMLELAK	1	Unmodified	832.43644	0.43644025	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.44	38.813	2	0.0094456	34285	160511_QHF_FH_JSI9i_1	79.116	10.201			1.0534	1.0979	21.105	4	0	Median	1.2873	1.0483	NaN	1	0	Median	0.93781	1.15	NaN	1	0	Median	1.1832	1.1642	NaN	1	0	Median	0.70695	0.74184	NaN	1	0	Median	853190000	400050000	453140000	133930000	54038000	79891000	280030000	145650000	134380000	237220000	122930000	114280000	202010000	77428000	124590000	12924	144	12256	79116;79117;79118;79119	106888;106889;106890;106891	106891			4	
EMLESAVLPPEDMSQSGPSGSHPQGPR	0	Unmodified	2819.2854	0.28544228	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	62.232	61.323	3	1.2217E-17	53298	160511_QHF_FH_JSI11i_2	103.02	100.22			1.0977	1.126	18.63	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.295	1.2845	NaN	1	0	Median	0.93047	0.98703	NaN	1	0	Median	68651000	38411000	30240000	0	0	0	0	0	0	44670000	25962000	18708000	23981000	12448000	11532000	12925	2561	12257	79120;79121;79122	106892;106893;106894	106893			2	
EMLFEGGPRPWILEPSK	1	Unmodified	1985.0081	0.0080688509	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		89.507	88.824	3	2.7496E-05	78957	160511_QHF_FH_JSI11i_3	83.418	69.586			0.801	0.7549	16.646	4	1	Linear	1.3732	1.1754	NaN	1	0	Median	0.74449	0.89131	3.1124	2	1	Median	0.85798	0.79723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	191700000	99860000	91843000	8756000	3907000	4849000	71444000	41694000	29750000	111500000	54259000	57244000	0	0	0	12926	3734	12258	79123;79124;79125;79126	106895;106896;106897;106898	106896			4	
EMLFGSLAR	0	Unmodified	1022.5219	0.52190122	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.69	62.168	2	0.04033	54103	160511_QHF_FH_JSI11i_2	46.158	28.173			0.80471	0.78966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80471	0.78966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55201000	31093000	24108000	0	0	0	0	0	0	55201000	31093000	24108000	0	0	0	12927	387	12259	79127	106899	106899			1	
EMLGGEIIPR	0	Unmodified	1113.5852	0.58522975	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	2	2								1		1	2	58.971	58.068	2	1.2528E-05	50388	160511_QHF_FH_JSI11i_2	113.62	100.59			0.55112	0.50959	47.345	4	3	Median	0.83122	0.67815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36541	0.38293	NaN	1	1	Median	0.52533	0.5618	70.684	2	2	Median	1922700000	1493900000	428840000	43031000	19609000	23422000	0	0	0	1127000000	899500000	227470000	752710000	574750000	177950000	12928	2734	12260	79128;79129;79130;79131	106900;106901;106902;106903	106903			4	
EMLGPVTFIWK	1	Unmodified	1319.6948	0.6947802	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	100.58	100.44	2	0.00010353	88914	160511_QHF_FH_JSI10i_2	86.624	57.537			1.0064	1.0004	23.062	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.96399	1.1996	NaN	1	0	Median	1.0064	1.0004	NaN	1	0	Median	0.69542	0.75879	NaN	1	1	Median	89796000	50582000	39213000	0	0	0	22073000	12778000	9294900	29025000	18678000	10348000	38698000	19127000	19571000	12929	4288	12261	79132;79133;79134	106904;106905;106906	106906			3	
EMLKRHPLSVMLDLKCK	3	Unmodified	2097.1261	0.12609227	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	3			By MS/MS		16	0									1			1		92.658	83.286	3	0.037423	46870	160513_QHF_FH_JSI11Kac_6	53.403	39.977			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74617000	74617000	0	0	0	0	0	0	0	74617000	74617000	0	0	0	0	12930	2469	12262	79135	106907	106907			1	
EMLNLYIENEGK	1	Unmodified	1451.6966	0.6966307	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	65.871	65.152	2	2.0737E-08	55787	160511_QHF_FH_JSI12i_2	140.48	101.48			0.9996	1.0635	16.592	7	1	Median	1.1368	0.9675	NaN	1	0	Median	0.9392	1.1327	11.974	2	1	Median	1.1191	1.0837	30.548	2	0	Median	1.1223	1.1927	16.227	2	0	Median	591420000	289040000	302370000	81551000	34642000	46909000	156220000	81847000	74374000	190690000	93497000	97195000	162950000	79058000	83895000	12931	1417	12263	79136;79137;79138;79139;79140;79141;79142	106908;106909;106910;106911;106912;106913;106914;106915;106916	106909			9	
EMLQAQLDR	0	Unmodified	1102.5441	0.54409322	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.815	35.207	2	0.00078496	31611	160511_QHF_FH_JSI11i_1	74.173	57.97			0.6751	0.64907	10.624	4	2	Median	0.66301	0.54599	NaN	1	1	Median	0.54658	0.63395	NaN	1	1	Median	0.69023	0.66455	NaN	1	0	Median	0.68741	0.69826	NaN	1	0	Median	529310000	315320000	213990000	111790000	62499000	49290000	153400000	95631000	57765000	148200000	90599000	57599000	115920000	66587000	49337000	12932	3860	12264	79143;79144;79145;79146;79147	106917;106918;106919;106920;106921	106917			5	
EMLQAQLDREAQVR	0	Unmodified	1685.8519	0.85190256	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.306	43.19	3	0.018747	36857	160511_QHF_FH_JSI12i_3	34.612	21.199			1.137	1.0936	16.213	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.335	1.2264	NaN	1	1	Median	0.96839	0.97511	NaN	1	1	Median	124450000	46450000	78002000	0	0	0	0	0	0	69501000	20639000	48862000	54952000	25811000	29141000	12933	3860	12265	79148;79149	106922;106923	106923			2	
EMLQDRESQNQK	1	Unmodified	1504.694	0.69400493	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		10.147	9.8086	3	0.00068859	7436	160511_QHF_FH_JSI11i_3	61.235	45.863			1.1388	1.0196	8.2107	3	0	Median	1.1388	0.98033	NaN	1	0	Median	0.8367	1.0196	NaN	1	0	Median	1.2438	1.1478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141710000	66861000	74849000	38483000	18620000	19862000	54090000	26882000	27209000	49137000	21359000	27778000	0	0	0	12934	3799	12266	79150;79151;79152	106924;106925	106924			2	
EMLQQSK	1	Unmodified	862.42185	0.42185282	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.1	7	6	4			4	2			6	4	6	7	10.646	7.9657	2	1.7029E-07	5326	160513_QHF_FH_JSI11Kac_4	140.98	115.99			0.91788	1.0104	60.041	23	10	Median	1.4097	1.1862	72.468	6	4	Median	0.80671	0.89175	10.464	4	0	Median	1.0571	1.0552	55.365	6	2	Median	0.85984	0.92379	77.517	7	4	Median	96482000000	38663000000	57819000000	18483000000	8165500000	10318000000	18409000000	7678600000	10730000000	28776000000	10781000000	17995000000	30814000000	12038000000	18776000000	12935	898;880	12267	79153;79154;79155;79156;79157;79158;79159;79160;79161;79162;79163;79164;79165;79166;79167;79168;79169;79170;79171;79172;79173;79174;79175	106926;106927;106928;106929;106930;106931;106932;106933;106934;106935;106936;106937;106938;106939;106940;106941;106942;106943;106944;106945;106946;106947;106948;106949;106950;106951;106952;106953;106954;106955;106956	106938			31	
EMLQQSK	1	Oxidation (M)	878.41677	0.41676744	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	5.5	5	2	3	1	3	3	2			3	5	4	7	7.5396	3.8868	2	0.0074027	1805	160513_QHF_FH_JSI10Kac_2	85.212	69.068			0.93248	1.0077	51.886	17	2	Median	0.47962	0.38398	33.338	2	0	Median	1.0302	1.1916	24.616	4	0	Median	0.91271	0.88149	46.294	4	0	Median	0.94088	1.0498	48.541	7	2	Median	8569600000	4305300000	4264400000	1247900000	850530000	397390000	840810000	406650000	434160000	2588600000	1015200000	1573400000	3892300000	2032900000	1859400000	12936	898;880	12267	79176;79177;79178;79179;79180;79181;79182;79183;79184;79185;79186;79187;79188;79189;79190;79191;79192;79193;79194	106957;106958;106959;106960;106961;106962;106963;106964;106965;106966;106967;106968;106969;106970;106971;106972;106973	106966		441	17	
EMLQQSKILK	2	Acetyl (K)	1258.6955	0.69550848	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.997					1	3	3	6		1	4	4	4	59.911	49.569	2	3.0627E-57	27542	160513_QHF_FH_JSI12Kac_4	230.7	160.7			0.86664	0.90933	41.425	11	2	Median	0.97755	0.81914	NaN	1	0	Median	0.77439	0.89724	17.927	4	0	Median	0.63297	0.62695	46.627	3	1	Plateau	0.86664	0.91675	56.51	3	1	Plateau	1105900000	622860000	483060000	10526000	5744400	4781500	367350000	170720000	196630000	422260000	273600000	148660000	305780000	172790000	132990000	12937	898;880	12268	79195;79196;79197;79198;79199;79200;79201;79202;79203;79204;79205;79206;79207	106974;106975;106976;106977;106978;106979;106980;106981;106982;106983;106984;106985;106986;106987;106988;106989;106990;106991	106984	603		17	
EMLQQSKILK	2	Acetyl (K);Oxidation (M)	1274.6904	0.69042311	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.8					1	6	6	2			5	4	6	48.99	39.138	2	1.4525E-18	22741	160513_QHF_FH_JSI11Kac_4	174.41	139.12			0.77786	0.84653	23.988	15	0	Median	NaN	NaN	NaN	0	0	Median	0.80244	0.9651	13.102	5	0	Median	0.57684	0.55746	15.048	4	0	Median	0.81691	0.88865	13.006	6	0	Median	577110000	336710000	240400000	0	0	0	204620000	120660000	83955000	138770000	83434000	55337000	233720000	132610000	101110000	12938	898;880	12268	79208;79209;79210;79211;79212;79213;79214;79215;79216;79217;79218;79219;79220;79221;79222	106992;106993;106994;106995;106996;106997;106998;106999;107000;107001;107002;107003;107004;107005;107006;107007;107008;107009;107010;107011;107012	106998	603	441	21	
EMLSVGLGFLR	0	Unmodified	1220.6587	0.65872905	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	93.118	93.107	2	5.5751E-05	80778	160511_QHF_FH_JSI12i_3	102.61	82.279			1.1096	1.108	17.715	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.025	0.97756	NaN	1	1	Median	1.2011	1.2559	NaN	1	1	Median	85784000	42689000	43096000	0	0	0	0	0	0	26523000	12743000	13781000	59261000	29946000	29315000	12939	3323	12269	79223;79224;79225	107013;107014;107015	107015			3	
EMLTADNLDIDNMR	0	Unmodified	1649.7389	0.73890622	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	70.033	69.386	2	1.3201E-07	63119	160511_QHF_FH_JSI11i_1	181.31	159.94			0.92857	0.95763	14.354	3	3	Median	1.362	1.1291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89767	0.84828	NaN	1	1	Median	0.92857	0.95763	NaN	1	1	Median	156910000	76859000	80051000	33476000	13795000	19681000	0	0	0	51050000	23398000	27652000	72384000	39666000	32718000	12940	4202	12270	79226;79227;79228	107016;107017;107018	107016			3	
EMMLEHFK	1	Unmodified	1063.4831	0.48307287	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.41	41.446	3	0.0050911	35560	160511_QHF_FH_JSI11i_2	44.753	34.043			0.6992	0.65185	26.716	4	2	Median	0.67734	0.59588	NaN	1	1	Median	0.40061	0.48717	NaN	1	1	Median	0.72176	0.71307	NaN	1	0	Median	0.84689	0.91331	NaN	1	0	Median	103040000	54887000	48157000	13100000	9048800	4051200	21066000	13804000	7262300	44271000	20446000	23826000	24607000	11590000	13017000	12941	486	12271	79229;79230;79231;79232	107019;107020;107021;107022;107023	107022			5	
EMMLVTSGAVAFGK	1	Unmodified	1439.7153	0.71525765	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	77.002	76.134	2	0.00010562	66763	160511_QHF_FH_JSI11i_2	107.85	103.4			0.57668	0.62802	25.252	3	1	Median	0.56876	0.48787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81904	0.80844	NaN	1	0	Median	0.57668	0.62802	NaN	1	1	Median	114820000	74272000	40544000	28709000	18300000	10409000	0	0	0	48201000	32853000	15347000	37906000	23119000	14788000	12942	1837	12272	79233;79234;79235;79236	107024;107025;107026;107027;107028	107027			5	
EMNADAVFAFQLR	0	Unmodified	1510.7238	0.7238485	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	88.406	87.651	2	4.4991E-05	75752	160511_QHF_FH_JSI12i_2	78.653	68.421			1.1223	1.2097	10.06	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.106	1.1266	NaN	1	1	Median	1.1388	1.2989	NaN	1	1	Median	30514000	12342000	18172000	0	0	0	0	0	0	20343000	7354600	12988000	10171000	4987600	5183400	12943	678	12273	79237;79238;79239;79240	107029;107030;107031;107032	107030			4	
EMNDAAMFYTNR	0	Oxidation (M)	1477.5966	0.59659908	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			1	3	3	1	41.438	39.616	2	5.9952E-05	36027	160511_QHF_FH_JSI11i_1	102.97	100.21			0.99081	1.0891	10.122	7	4	Median	NaN	NaN	NaN	0	0	Median	0.87417	1.0164	10.328	3	2	Plateau	1.0285	1.0053	10.309	3	2	Median	1.1302	1.1547	NaN	1	0	Median	318180000	165800000	152380000	0	0	0	110140000	61660000	48485000	142210000	74937000	67275000	65824000	29199000	36625000	12944	2169	12274	79241;79242;79243;79244;79245;79246;79247;79248	107033;107034;107035;107036;107037;107038;107039;107040;107041;107042	107034		1817;1818	10	
EMNDAAMFYTNR	0	Unmodified	1461.6017	0.60168445	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	52.526	49.728	2	5.9271E-53	43060	160511_QHF_FH_JSI11i_2	212.09	198.5			1.0337	1.0477	9.7913	10	0	Median	1.1998	0.99882	3.0765	2	0	Median	0.89071	1.0533	16.181	3	0	Plateau	1.0726	1.0656	3.7707	2	0	Median	1.0413	1.0935	4.6594	3	0	Plateau	2467600000	1187100000	1280500000	479810000	189870000	289940000	696190000	411240000	284960000	680820000	303020000	377800000	610790000	283020000	327770000	12945	2169	12274	79249;79250;79251;79252;79253;79254;79255;79256;79257;79258	107043;107044;107045;107046;107047;107048;107049;107050;107051;107052;107053;107054;107055;107056;107057;107058	107054			15	
EMNDAATFYTNR	0	Unmodified	1431.6089	0.60887832	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				40.946	39.734	2	0.00026626	35188	160511_QHF_FH_JSI9i_1	91.937	71.237			0.63869	0.5455	NaN	1	1	Median	0.63869	0.5455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32324000	16689000	15635000	32324000	16689000	15635000	0	0	0	0	0	0	0	0	0	12946	1491	12275	79259	107059	107059			1	
EMNPALGIDCLHK	1	Unmodified	1496.7116	0.71156925	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.386	2	9								3	2	3	3	54.406	53.53	2;3	2.3897E-10	45826	160511_QHF_FH_JSI12i_2	148.18	137.81			0.9676	1.0007	18.34	10	1	Median	1.306	1.1035	7.7843	2	1	Median	0.759	0.92772	4.6517	2	0	Median	0.77576	0.80235	9.9497	3	0	Median	1.0899	1.226	8.4815	3	0	Median	2393300000	1184700000	1208600000	221140000	98293000	122850000	476960000	257410000	219550000	1086600000	551580000	535060000	608550000	277370000	331180000	12947	1630	12276	79260;79261;79262;79263;79264;79265;79266;79267;79268;79269;79270	107060;107061;107062;107063;107064;107065;107066;107067;107068;107069;107070;107071;107072;107073;107074;107075;107076;107077	107063			17	
EMNPNYTEFK	1	Unmodified	1271.5492	0.54923818	1689;1688	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	40.54	39.813	2	8.1766E-07	35933	160511_QHF_FH_JSI11i_1	123.35	117.04			1.1897	1.1786	32.877	6	6	Median	1.8557	1.5289	44.312	2	2	Median	1.0516	1.2428	NaN	1	1	Median	0.97635	0.93553	NaN	1	1	Median	1.3715	1.428	40.838	2	2	Median	783340000	342710000	440630000	185990000	75961000	110030000	144410000	67698000	76715000	150590000	77220000	73368000	302350000	121830000	180510000	12948	1689;1688	12277	79271;79272;79273;79274;79275;79276;79277	107078;107079;107080;107081;107082;107083;107084	107078			7	
EMNPPDNIK	1	Unmodified	1056.491	0.49099502	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	25.189	24.857	2	2.6438E-05	22083	160511_QHF_FH_JSI12i_1	104.06	66.898			0.74375	0.77323	25.137	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0397	1.2084	NaN	1	1	Median	0.83039	0.79129	NaN	1	1	Median	0.74375	0.77323	NaN	1	0	Median	422270000	225130000	197140000	0	0	0	115230000	60314000	54917000	154960000	80995000	73967000	152080000	83825000	68252000	12949	2490	12278	79278;79279;79280;79281;79282	107085;107086;107087;107088;107089;107090	107086			6	
EMNPPDNIK	1	Oxidation (M)	1072.4859	0.48590964	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	1	0	By MS/MS			By MS/MS	5	5.66	2					1				1			2	19.753	18.925	2	0.0070905	21182	160511_QHF_FH_JSI9i_1	76.827	43.986			1.2284	1.1347	94.819	2	2	Median	2.7291	2.2185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55294	0.58035	NaN	1	1	Median	89408000	50710000	38698000	26774000	7303700	19470000	0	0	0	0	0	0	62634000	43406000	19228000	12950	2490	12278	79283;79284;79285	107091;107092;107093	107092		1973	3	
EMNQQHSGHIR	0	Unmodified	1335.6102	0.61021573	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		50.01	50.01	3	0.038369	44310	160511_QHF_FH_JSI11i_3	15.756	0.41843			1.1361	1.0787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1361	1.0787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	322360000	113090000	209270000	0	0	0	0	0	0	322360000	113090000	209270000	0	0	0	12951	1311	12279	79286	107094	107094			1	
EMPAVLVFK	1	Unmodified	1032.5678	0.56778878	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.133	76.297	2	0.00015465	67323	160511_QHF_FH_JSI9i_2	88.942	78.955			0.89744	0.98743	4.1171	4	0	Median	1.2301	1.0208	NaN	1	0	Median	0.81856	0.98384	NaN	1	0	Median	0.9805	0.99103	NaN	1	0	Median	0.82142	0.92543	NaN	1	0	Median	193610000	103620000	89998000	25492000	14420000	11072000	42858000	20750000	22108000	75074000	43646000	31428000	50190000	24799000	25391000	12952	4142	12280	79287;79288;79289;79290	107095;107096;107097;107098	107097			4	
EMPLQDPR	0	Unmodified	984.46987	0.46986564	3149	Q6UW78	UQCC3	Ubiquinol-cytochrome-c reductase complex assembly factor 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	30.779	29.944	2	0.012705	26084	160511_QHF_FH_JSI9i_1	61.999	28.203			0.82409	1.0724	24.494	4	2	Linear	1.2898	1.0631	23.35	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5068	1.4867	NaN	1	1	Median	0.8702	0.91715	NaN	1	0	Median	649000000	294140000	354860000	248480000	108850000	139630000	0	0	0	177990000	78157000	99829000	222530000	107130000	115400000	12953	3149	12281	79291;79292;79293;79294	107099;107100;107101;107102	107102			4	
EMPPTNPIR	0	Unmodified	1053.5277	0.52771487	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			1	2	3	4	36.152	33.711	2	0.0019446	29141	160511_QHF_FH_JSI11i_2	68.383	11.335			1.2614	1.1927	22.476	6	3	Median	1.3345	1.0952	NaN	1	0	Median	0.82034	0.97509	NaN	1	1	Median	1.2133	1.1869	17.131	2	0	Median	1.3849	1.5344	23.576	2	2	Median	920540000	244430000	676110000	70521000	29416000	41105000	179420000	90681000	88737000	520190000	82258000	437930000	150410000	42074000	108340000	12954	1385	12282	79295;79296;79297;79298;79299;79300;79301;79302;79303;79304	107103;107104;107105;107106;107107;107108;107109;107110;107111;107112;107113;107114;107115;107116	107115			14	
EMPQDLR	0	Unmodified	887.4171	0.41710179	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	25.015	24.455	2	0.0466	21783	160511_QHF_FH_JSI12i_1	44.117	40.264			1.0596	1.0445	14.271	4	0	Median	1.3658	1.1306	NaN	1	0	Median	0.80321	0.96495	NaN	1	0	Median	0.93718	0.90807	NaN	1	0	Median	1.198	1.2391	NaN	1	0	Median	471350000	227390000	243960000	76232000	30795000	45437000	126890000	66415000	60477000	98104000	40792000	57313000	170120000	89391000	80730000	12955	372	12283	79305;79306;79307;79308	107117	107117			1	
EMPSVFGK	1	Unmodified	893.43169	0.43168922	5163;4664	Q9NZN4;Q9H223	EHD2;EHD4	EH domain-containing protein 2;EH domain-containing protein 4	no	no	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	49.74	48.833	2	0.0020959	41972	160511_QHF_FH_JSI12i_2	82.671	66.527			1.0805	1.1088	10.99	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0746	1.0259	NaN	1	0	Median	1.0864	1.1984	NaN	1	0	Median	114740000	57103000	57634000	0	0	0	0	0	0	39960000	17128000	22832000	74777000	39975000	34802000	12956	5163;4664	12284	79309;79310	107118;107119;107120;107121;107122	107122			5	
EMPTSGSK	1	Unmodified	835.37457	0.37456828	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	2	1	1	9.2332	6.0346	2	0.0045409	5617	160511_QHF_FH_JSI9i_1	68.383	20.209			0.87444	0.93285	12.214	5	0	Median	1.26	1.0394	NaN	1	0	Median	0.82914	0.97904	15.433	2	0	Median	0.82577	0.80906	NaN	1	0	Median	0.87444	0.93285	NaN	1	0	Median	1964700000	1154600000	810170000	572470000	260910000	311560000	718780000	455760000	263020000	11742000	5367800	6374200	661730000	432520000	229210000	12957	878	12285	79311;79312;79313;79314;79315	107123;107124;107125;107126;107127;107128	107128			6	
EMQDVDLAEVKPLVEK	2	Unmodified	1841.9445	0.94446554	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.559	5	10	1							4	5	4	3	70.071	69.299	2;3	1.2311E-07	61021	160511_QHF_FH_JSI9i_2	92.977	76.292			0.92734	1.0391	44.473	13	8	Plateau	0.82984	0.6926	93.625	3	2	Plateau	0.91195	1.4387	21.084	3	2	Plateau	1.0379	1.0187	28.18	4	3	Median	0.86925	0.92853	22.294	3	1	Plateau	1797500000	920420000	877050000	161830000	73861000	87968000	565850000	293790000	272050000	552950000	269490000	283460000	516840000	283280000	233570000	12958	3851	12286	79316;79317;79318;79319;79320;79321;79322;79323;79324;79325;79326;79327;79328;79329;79330;79331	107129;107130;107131;107132;107133;107134;107135;107136;107137;107138;107139;107140;107141;107142;107143;107144;107145;107146;107147;107148;107149;107150;107151;107152;107153;107154;107155	107148			27	
EMQDVDLAEVKPLVEK	2	Oxidation (M)	1857.9394	0.93938016	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	1	1			By MS/MS		1	0	1											1		61.602	61.164	3	0.001415	55528	160511_QHF_FH_JSI11i_1	65.949	55.291			1.0217	0.99752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0217	0.99752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53843000	25267000	28577000	0	0	0	0	0	0	53843000	25267000	28577000	0	0	0	12959	3851	12286	79332	107156	107156		2300	1	
EMQENDASMR	0	Unmodified	1209.4754	0.47542131	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.869	11.466	2	8.507E-56	8963	160511_QHF_FH_JSI9i_1	232.41	190.98			0.77722	0.85269	8.7102	4	0	Median	1.0818	0.89647	NaN	1	0	Median	0.77368	0.90996	NaN	1	0	Median	0.78077	0.75671	NaN	1	0	Median	0.7693	0.81104	NaN	1	0	Median	812320000	450590000	361730000	191190000	102140000	89059000	234050000	125740000	108310000	165860000	100750000	65108000	221210000	121960000	99255000	12960	1379	12287	79333;79334;79335;79336	107157;107158;107159;107160;107161;107162;107163	107163			7	
EMQNLSFQDCYSSK	1	Unmodified	1735.7182	0.71817077	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	50.856	50.092	2	2.2061E-65	45254	160511_QHF_FH_JSI11i_1	226.73	212.27			0.8297	0.79341	24.938	6	4	Median	0.99659	0.81142	26.675	2	2	Median	0.63942	0.76751	NaN	1	0	Median	0.84023	0.82018	NaN	1	0	Median	0.98735	1.0146	40.45	2	2	Median	600550000	318710000	281840000	113050000	60876000	52172000	127330000	75334000	51995000	126710000	67017000	59695000	233460000	115480000	117980000	12961	1341	12288	79337;79338;79339;79340;79341;79342	107164;107165;107166;107167;107168;107169;107170;107171;107172	107165			9	
EMQNLSQHGR	0	Unmodified	1198.5513	0.55130386	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	8.5639	8.6614	2	1.045E-05	6066	160511_QHF_FH_JSI12i_3	105.98	55.368			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12962	252	12289	79343	107173	107173			1	
EMQPTHPIR	0	Oxidation (M)	1123.5444	0.54442757	2051;1384;1288	P27348;P31946;P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.63		25	14				3	7	4	12	10	12	19	10.624	8.0244	2;3	3.0756E-06	5127	160511_QHF_FH_JSI9i_2	128.38	101.78			1.0417	1.0631	54.738	53	4	Median	1.2062	1.0218	67.385	12	0	Median	0.79058	0.9687	50.851	10	1	Median	1.0361	1.0399	32.214	12	0	Median	1.0226	1.1006	59.583	19	3	Median	17026000000	7820700000	9205800000	3010800000	1357400000	1653400000	2737400000	1380200000	1357200000	5248800000	2455600000	2793200000	6029500000	2627500000	3402000000	12963	1288;1384;2051	12290	79344;79345;79346;79347;79348;79349;79350;79351;79352;79353;79354;79355;79356;79357;79358;79359;79360;79361;79362;79363;79364;79365;79366;79367;79368;79369;79370;79371;79372;79373;79374;79375;79376;79377;79378;79379;79380;79381;79382;79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393;79394;79395;79396	107174;107175;107176;107177;107178;107179;107180;107181;107182;107183;107184;107185;107186;107187;107188;107189;107190;107191;107192;107193;107194;107195;107196;107197;107198;107199;107200;107201;107202;107203;107204;107205;107206;107207;107208;107209;107210;107211;107212;107213;107214;107215;107216;107217;107218;107219;107220;107221;107222;107223;107224;107225;107226;107227;107228;107229;107230;107231;107232;107233;107234;107235	107197		925	61	
EMQPTHPIR	0	Unmodified	1107.5495	0.54951295	2051;1384;1288	P27348;P31946;P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.94	6.58	2	9	8					6	8	8	8	9	8	15.214	11.302	2;3	8.0661E-17	9994	160511_QHF_FH_JSI9i_2	157.91	104.74			1.0393	1.0442	10.559	32	1	Median	1.1904	0.98691	10.225	7	1	Median	0.82794	0.96048	5.6758	8	0	Median	1.0684	1.0487	12.746	9	0	Median	1.0496	1.1388	7.1565	8	0	Median	39053000000	17331000000	21722000000	5850400000	2693700000	3156700000	6421200000	2653600000	3767600000	15474000000	6985100000	8488400000	11308000000	4998900000	6309300000	12964	1288;1384;2051	12290	79397;79398;79399;79400;79401;79402;79403;79404;79405;79406;79407;79408;79409;79410;79411;79412;79413;79414;79415;79416;79417;79418;79419;79420;79421;79422;79423;79424;79425;79426;79427;79428;79429	107236;107237;107238;107239;107240;107241;107242;107243;107244;107245;107246;107247;107248;107249;107250;107251;107252;107253;107254;107255;107256;107257;107258;107259;107260;107261;107262;107263;107264;107265;107266;107267;107268;107269;107270;107271;107272;107273;107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286	107259			51	
EMQQLSGGQK	1	Unmodified	1104.5234	0.52335778	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	14.409	11.661	2	1.8104E-06	9840	160511_QHF_FH_JSI11i_1	134.25	89.165			0.70658	0.71935	78.716	6	6	Median	3.0034	2.4806	NaN	1	1	Median	0.41896	0.49929	NaN	1	1	Median	0.5207	0.50636	89.627	3	3	Plateau	0.6143	0.65489	NaN	1	1	Median	1730200000	1358400000	371810000	120650000	33002000	87653000	576810000	469360000	107450000	686850000	579420000	107440000	345900000	276630000	69274000	12965	5479	12291	79430;79431;79432;79433;79434;79435	107287;107288;107289;107290;107291;107292	107287			6	
EMQQLSGGQK	1	Oxidation (M)	1120.5183	0.5182724	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						2						1	1	7.2477	0.024547	2	0.0080801	2716	160513_QHF_FH_JSI12Kac_3	55.549	31.395			0.78585	0.7994	10.335	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89747	0.86001	NaN	1	0	Median	0.68812	0.74307	NaN	1	0	Median	4493600	2199600	2294100	0	0	0	0	0	0	2753300	1399200	1354100	1740300	800370	939960	12966	5479	12291	79436;79437	107293	107293		2677	1	
EMQQSEAQINTAK	1	Unmodified	1476.6879	0.68785692	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	19.913	19.183	2	4.4551E-05	16188	160511_QHF_FH_JSI9i_1	116.74	90.064			2.084	1.9854	34.889	3	3	Median	2.3779	1.9854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1802	1.126	NaN	1	1	Median	2.084	2.126	NaN	1	1	Median	118360000	63079000	55277000	47708000	26735000	20973000	0	0	0	38567000	20773000	17795000	32081000	15572000	16510000	12967	4096	12292	79438;79439;79440;79441	107294;107295;107296;107297	107296			4	
EMSGDLEEGMLAVVK	1	Unmodified	1606.7582	0.75824468	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	84.198	83.772	2;3	3.6244E-21	74451	160511_QHF_FH_JSI9i_1	205.46	185.81			0.92278	0.94766	12.766	9	3	Median	1.1246	0.94271	10.989	2	0	Median	0.70793	0.82088	16.748	3	2	Median	0.97726	0.96193	2.1143	2	0	Median	0.82316	0.85525	20.152	2	1	Median	1052900000	569140000	483770000	196030000	98999000	97034000	434050000	250500000	183550000	220290000	103070000	117210000	202540000	116570000	85975000	12968	1723	12293	79442;79443;79444;79445;79446;79447;79448;79449;79450	107298;107299;107300;107301;107302;107303;107304;107305;107306;107307;107308;107309;107310;107311;107312;107313;107314;107315;107316;107317;107318	107315			21	
EMSGDLEEGMLAVVK	1	Oxidation (M)	1622.7532	0.7531593	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	74.617	74.062	2	0.015581	67495	160511_QHF_FH_JSI12i_1	51.774	34.607			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12969	1723	12293	79451	107319	107319		1411	1	
EMSSSTLNLVVAGAPK	1	Unmodified	1602.8287	0.8287075	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	68.545	67.977	2;3	7.2683E-41	61813	160511_QHF_FH_JSI11i_1	210.15	195.18			1.3629	1.4904	36.459	8	3	Median	1.5754	1.2859	46.068	2	0	Median	0.97655	1.1496	43.366	2	1	Median	1.603	1.5465	47.676	2	0	Median	1.7057	1.7563	29.854	2	2	Median	502200000	231610000	270590000	97390000	41489000	55901000	167370000	92402000	74971000	127180000	53331000	73850000	110260000	44392000	65865000	12970	3709	12294	79452;79453;79454;79455;79456;79457;79458;79459	107320;107321;107322;107323;107324;107325;107326;107327;107328;107329;107330	107320			11	
EMSVQEAYK	1	Unmodified	1083.4907	0.49066067	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.697	26.429	2	0.007443	22944	160511_QHF_FH_JSI9i_1	53.404	42.694			0.82911	0.67392	NaN	1	0	Median	0.82911	0.67392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48497000	31507000	16989000	48497000	31507000	16989000	0	0	0	0	0	0	0	0	0	12971	1085	12295	79460	107331	107331			1	
EMSVQEAYKK	2	Unmodified	1211.5856	0.58562368	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	21.575	20.722	2;3	6.3206E-06	17639	160511_QHF_FH_JSI9i_2	135.71	118.33			2.048	2.1368	60.081	8	7	Median	3.9474	3.4556	NaN	1	1	Median	1.0799	1.3284	39.196	2	1	Median	2.8463	2.862	47.484	2	2	Median	2.0353	2.2319	74.832	3	3	Median	858080000	367930000	490160000	18587000	3758300	14829000	216100000	113700000	102400000	272620000	94609000	178010000	350770000	155860000	194920000	12972	1085	12296	79461;79462;79463;79464;79465;79466;79467;79468;79469	107332;107333;107334;107335;107336;107337;107338;107339;107340	107335			9	
EMTADVIELK	1	Unmodified	1147.5795	0.57947567	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	58.415	57.812	2	6.6885E-06	52390	160511_QHF_FH_JSI11i_1	109.66	74.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12973	4983	12297	79470;79471;79472;79473;79474	107341;107342;107343;107344;107345	107341			5	
EMTEGYGSLDDR	0	Unmodified	1371.5613	0.56125943	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		32.954	32.614	2	0.00011446	29224	160511_QHF_FH_JSI11i_1	83.869	75.943			4.1585	4.4666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.1585	4.4666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10025000	2583700	7441000	0	0	0	10025000	2583700	7441000	0	0	0	0	0	0	12974	5447	12298	79475;79476	107346;107347	107346			2	
EMTGIWR	0	Unmodified	891.42727	0.42727255	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		41.266	40.55	2	0.01534	34800	160511_QHF_FH_JSI11i_2	64.803	55.03			0.89916	1.0018	10.064	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87247	1.0757	NaN	1	0	Median	0.92667	0.93296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180610000	93928000	86680000	0	0	0	71821000	42707000	29114000	108790000	51221000	57566000	0	0	0	12975	5711	12299	79477;79478	107348;107349	107348			2	
EMTHLQK	1	Unmodified	885.43784	0.43783723	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	8.6711	8.1906	2	0.0088278	5851	160511_QHF_FH_JSI11i_2	81.784	52.446			1.0609	1.1367	70.727	4	3	Median	1.8464	1.6093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9307	0.9414	NaN	1	0	Median	0.60896	0.67687	99.967	2	2	Median	291110000	156930000	134180000	31589000	12949000	18640000	0	0	0	133830000	64084000	69745000	125690000	79896000	45792000	12976	2560	12300	79479;79480;79481;79482	107350;107351;107352;107353;107354	107353			5	
EMTLDEWK	1	Unmodified	1050.4692	0.46919694	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	54.123	52.24	2	2.8754E-06	44786	160511_QHF_FH_JSI12i_2	141.39	120.09			1.0878	1.0292	10.743	10	1	Median	1.3496	1.0933	10.872	3	1	Plateau	0.82471	0.99004	1.4348	2	0	Median	1.0878	1.0919	4.305	2	0	Median	0.84457	0.90891	18.359	3	0	Plateau	8665100000	4208000000	4457100000	1970100000	792440000	1177600000	2338300000	1397600000	940700000	1894700000	913680000	981040000	2462000000	1104300000	1357800000	12977	3609	12301	79483;79484;79485;79486;79487;79488;79489;79490;79491;79492	107355;107356;107357;107358;107359;107360;107361;107362;107363;107364;107365;107366;107367;107368;107369;107370;107371;107372;107373;107374;107375;107376;107377;107378;107379;107380;107381	107359			27	
EMTLDEWK	1	Oxidation (M)	1066.4641	0.46411156	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	1	0				By MS/MS	14	0							1						1	45.278	35.199	2	0.04857	20496	160513_QHF_FH_JSI12Kac_4	41.429	30.556			0.97837	1.0338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97837	1.0338	NaN	1	0	Median	2818700	1246300	1572400	0	0	0	0	0	0	0	0	0	2818700	1246300	1572400	12978	3609	12301	79493	107382	107382			1	
EMTNHQKK	2	Acetyl (K)	1056.5022	0.50222841	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		5.361	-3.2049	2	0.01709	1752	160513_QHF_FH_JSI11Kac_4	75.213	42.858			0.31077	0.30868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31077	0.30868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6478400	5352700	1125600	0	0	0	0	0	0	6478400	5352700	1125600	0	0	0	12979	1400	12302	79494;79495	107383;107384	107383	1360		2	
EMVANWDSLR	0	Unmodified	1219.5656	0.56555694	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	3	5	1							2	4	2	1	57.972	57.153	2	2.1667E-07	48983	160511_QHF_FH_JSI12i_2	116.3	71.857			1.1075	1.1457	18.675	9	8	Median	1.7839	1.4968	12.612	2	2	Median	0.87761	1.0711	18.887	4	4	Median	1.2077	1.1708	3.0737	2	2	Median	0.97767	1.0994	NaN	1	0	Median	1596600000	706940000	889700000	240670000	96102000	144570000	613990000	295770000	318220000	399890000	169830000	230070000	342090000	145250000	196840000	12980	5215	12303	79496;79497;79498;79499;79500;79501;79502;79503;79504	107385;107386;107387;107388;107389;107390;107391;107392;107393	107386			9	
EMVECFNK	1	Unmodified	1055.4416	0.44160198	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	31.637	29.484	2	0.00095898	25813	160511_QHF_FH_JSI9i_1	116.3	89.503			1.5034	1.5311	50.416	6	5	Median	3.0303	2.5059	NaN	1	1	Median	1.0581	1.295	80.136	2	2	Median	1.0903	1.0711	26.754	2	1	Median	1.7099	1.8114	NaN	1	1	Median	2209300000	627800000	1581500000	321830000	53793000	268030000	634290000	220180000	414110000	466950000	192390000	274560000	786200000	161430000	624770000	12981	2340	12304	79505;79506;79507;79508;79509;79510	107394;107395;107396;107397;107398;107399	107398			6	
EMVEGMGGTQSEQYQEFRK	1	Unmodified	2232.978	0.97796729	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.406	45.406	3	0.0031381	38800	160511_QHF_FH_JSI12i_3	44.816	28.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9095300	0	9095300	0	0	0	0	0	0	9095300	0	9095300	0	0	0	12982	3636	12305	79511;79512	107400;107401	107401			2	
EMVEIITK	1	Unmodified	961.51542	0.51541885	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By matching		By MS/MS		1	0	2									1		1		46.781	45.967	2	0.0051166	41635	160511_QHF_FH_JSI11i_1	66.621	30.741			1.0294	0.92119	1.1504	2	0	Median	1.1299	0.92871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93781	0.91372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146560000	84854000	61701000	47091000	26537000	20554000	0	0	0	99465000	58317000	41147000	0	0	0	12983	2299	12306	79513;79514	107402	107402			1	
EMVELPLR	0	Unmodified	985.52665	0.52665224	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	60.907	60.129	2	0.00012323	54567	160511_QHF_FH_JSI11i_1	130.04	91.801			1.009	1.0355	13.147	8	0	Median	1.1647	0.97239	13.635	2	0	Median	0.85596	1.0354	13.087	2	0	Median	0.92455	0.91166	17.053	2	0	Median	1.0411	1.1192	10.044	2	0	Median	1631500000	828170000	803310000	319320000	160140000	159180000	373280000	197380000	175900000	612850000	305880000	306960000	326040000	164770000	161270000	12984	1846	12307	79515;79516;79517;79518;79519;79520;79521;79522	107403;107404;107405;107406;107407;107408;107409;107410;107411;107412;107413;107414;107415	107404			13	
EMVELPLRHPALFK	1	Unmodified	1678.9229	0.92288266	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	3.5		1	11						1	5	4	3	1	72.256	70.884	2;3;4	2.5672E-10	62241	160511_QHF_FH_JSI11i_3	145.71	141.14			0.93126	0.86322	30.906	13	3	Median	1.0714	0.86158	35.846	5	2	Median	0.64512	0.75454	11.083	4	0	Median	0.92412	0.87131	2.6023	3	0	Plateau	1.5919	1.7063	NaN	1	1	Median	1757300000	822640000	934650000	418220000	205730000	212490000	285650000	162740000	122910000	1033100000	447170000	585890000	20360000	7003600	13356000	12985	1846	12308	79523;79524;79525;79526;79527;79528;79529;79530;79531;79532;79533;79534;79535	107416;107417;107418;107419;107420;107421;107422;107423;107424;107425;107426;107427;107428;107429;107430;107431;107432;107433;107434;107435;107436;107437;107438;107439;107440;107441;107442;107443;107444;107445;107446;107447	107418			31	
EMVELPLRHPALFK	1	Oxidation (M)	1694.9178	0.91779728	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.448	62.446	4	8.1145E-05	52774	160511_QHF_FH_JSI10i_3	82.069	78.449			0.88922	0.73661	4.5287	3	0	Plateau	0.89335	0.73661	NaN	1	0	Median	0.60227	0.6952	NaN	1	0	Median	0.81713	0.76012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	275980000	148130000	127850000	106660000	53283000	53373000	71058000	42146000	28912000	98271000	52701000	45570000	0	0	0	12986	1846	12308	79536;79537;79538	107448;107449;107450;107451	107449		1523	3	
EMVIFFGHPR	0	Oxidation (M)	1247.6121	0.61211321	3339	Q86V97;Q8WVZ9	KBTBD6;KBTBD7	Kelch repeat and BTB domain-containing protein 6;Kelch repeat and BTB domain-containing protein 7	yes	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	55.414	46.21	3	0.0060746	24561	160513_QHF_FH_JSI9Kac_6	43.297	32.773			0.95194	1.0951	24.627	3	0	Median	1.6285	1.4119	NaN	1	0	Median	0.95194	1.0951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78527	0.86286	NaN	1	0	Median	33672000	18921000	14751000	10457000	5246000	5210600	15081000	9164900	5916600	0	0	0	8133800	4510400	3623400	12987	3339	12309	79539;79540;79541	107452;107453;107454	107452		2249	2	
EMVIFFGHPR	0	Unmodified	1231.6172	0.61719858	3339	Q86V97;Q8WVZ9	KBTBD6;KBTBD7	Kelch repeat and BTB domain-containing protein 6;Kelch repeat and BTB domain-containing protein 7	yes	no	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			68.632	60.421	3	0.00078583	33061	160513_QHF_FH_JSI10Kac_6	51.436	46.338			1.011	1.0171	8.4525	2	0	Median	1.1144	0.95805	NaN	1	0	Median	0.91718	1.0797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142080000	84485000	57599000	39408000	20133000	19275000	102680000	64352000	38325000	0	0	0	0	0	0	12988	3339	12309	79542;79543	107455	107455			1	
EMVLAQEESAR	0	Unmodified	1261.5973	0.597251	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.151	30.821	2	0.0078987	27471	160511_QHF_FH_JSI10i_1	58.676	46.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12989	3395	12310	79544	107456	107456			1	
EMVLELIR	0	Unmodified	1001.558	0.55795237	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.69		6	2					3		1	4	3	3	76.346	72.441	2	4.9894E-05	63724	160511_QHF_FH_JSI12i_2	135.77	0			1.002	1.0431	12.477	9	1	Median	1.3456	1.1417	NaN	1	0	Median	0.77952	0.93629	26.669	2	1	Median	1.0388	1.0431	7.7765	3	0	Plateau	1.002	1.0091	5.9026	3	0	Plateau	1047700000	544910000	502780000	164890000	87346000	77540000	204050000	118340000	85715000	413280000	198280000	215000000	265480000	140950000	124530000	12990	3966	12311	79545;79546;79547;79548;79549;79550;79551;79552;79553;79554;79555	107457;107458;107459;107460;107461;107462;107463;107464;107465;107466;107467;107468;107469;107470	107458			14	
EMVLSEK	1	Unmodified	834.4157	0.41570481	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.964	21.758	2	0.011537	18493	160511_QHF_FH_JSI9i_1	77.282	23.728			1.5995	1.3277	NaN	1	1	Median	1.5995	1.3277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166360000	84846000	81511000	166360000	84846000	81511000	0	0	0	0	0	0	0	0	0	12991	4641	12312	79556	107471	107471			1	
EMVMQYINTASK	1	Unmodified	1413.6632	0.66322208	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.641	56.716	2	3.977E-05	49140	160511_QHF_FH_JSI11i_2	112.13	85.611			1.4544	1.5239	14.94	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3249	1.3711	NaN	1	1	Median	1.5965	1.6937	NaN	1	1	Median	38747000	17413000	21334000	0	0	0	0	0	0	21479000	8914500	12564000	17268000	8498400	8769700	12992	4986	12313	79557;79558	107472;107473	107473			2	
EMVPAKPPK	2	Unmodified	995.54739	0.54738768	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	16.628	16.653	3	0.02507	13130	160511_QHF_FH_JSI12i_3	28.727	14.52			1.043	1.0197	25.312	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91912	0.85263	NaN	1	0	Median	1.1836	1.2196	NaN	1	0	Median	163830000	70182000	93644000	0	0	0	0	0	0	27658000	10888000	16770000	136170000	59294000	76873000	12993	10	12314	79559;79560	107474	107474			1	
EMVPEFVVPDLTGFK	1	Unmodified	1706.8589	0.858945	3445	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	3											1	2	101.59	101.48	2;3	0.00078752	92064	160511_QHF_FH_JSI12i_1	84.506	64.847			1.0047	1.0698	23.288	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4382	1.3928	NaN	1	0	Median	0.92171	0.96776	14.179	2	1	Median	193060000	114250000	78816000	0	0	0	0	0	0	60631000	28056000	32574000	132430000	86192000	46241000	12994	3445	12315	79561;79562;79563	107475;107476	107476			2	
EMVQNLMVLR	0	Unmodified	1231.6417	0.64169877	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.38	2	4	1				3	4		4	3	4	3	72.403	67.041	2	2.5064E-17	32959	160513_QHF_FH_JSI10Kac_5	164.96	138.51			1.0415	1.0918	32.838	13	4	Median	1.4189	1.1948	34.052	4	2	Median	0.80887	0.99383	51.32	3	1	Plateau	1.0415	1.0756	6.9018	3	0	Plateau	0.97234	1.0918	29.627	3	1	Plateau	3841000000	1928200000	1912800000	824960000	351120000	473840000	869430000	495850000	373580000	1423000000	715540000	707500000	723560000	365650000	357910000	12995	1000	12316	79564;79565;79566;79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577	107477;107478;107479;107480;107481;107482;107483;107484;107485;107486;107487;107488;107489;107490;107491;107492;107493;107494;107495;107496;107497;107498;107499;107500	107500			24	
EMVQNLMVLR	0	Oxidation (M)	1247.6366	0.6366134	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.421							3	10		3	4	2	4	66.058	55.322	2	0.0021833	29474	160513_QHF_FH_JSI11Kac_5	72.547	25.656			1.0821	1.1322	83.602	12	7	Median	2.331	1.9564	38.336	3	3	Plateau	0.92666	1.1016	24.856	4	2	Median	1.094	1.0918	25.568	2	0	Median	0.9715	1.063	173.82	3	2	Median	90982000	29599000	61382000	14622000	5412600	9209600	33074000	15376000	17698000	11406000	5178200	6228300	31879000	3632300	28247000	12996	1000	12316	79578;79579;79580;79581;79582;79583;79584;79585;79586;79587;79588;79589;79590	107501;107502;107503;107504;107505;107506;107507;107508;107509;107510;107511	107506		576	11	
EMVSQYLYTSK	1	Unmodified	1347.6381	0.63805318	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.03	1	6					1			2	3	1	2	51.678	50.771	2	5.5376E-13	46329	160511_QHF_FH_JSI12i_1	145.99	118.73			0.77289	0.81245	26.601	4	1	Linear	1.5611	1.3778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78247	0.7905	NaN	1	0	Median	0.79281	0.85107	12.781	2	0	Median	237730000	136590000	101140000	32610000	14151000	18459000	0	0	0	69989000	41021000	28968000	135130000	81413000	53716000	12997	432	12317	79591;79592;79593;79594;79595;79596;79597;79598	107512;107513;107514;107515;107516;107517;107518;107519;107520;107521;107522	107514			11	
EMWTEVPK	1	Unmodified	1018.4794	0.4793677	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	47.536	44.028	2	0.0012164	40185	160511_QHF_FH_JSI12i_1	92.47	92.47			0.8251	0.93238	20.574	11	0	Median	0.78579	0.67107	7.0955	2	0	Median	0.78797	0.93019	7.4768	3	0	Median	1.0796	1.052	19.915	3	0	Median	0.88514	0.93753	15.609	3	0	Median	4299900000	2318500000	1981400000	619610000	336350000	283260000	1146300000	648610000	497740000	1433600000	682410000	751180000	1100400000	651160000	449220000	12998	2002	12318	79599;79600;79601;79602;79603;79604;79605;79606;79607;79608;79609	107523;107524;107525;107526;107527;107528;107529;107530;107531;107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542	107528			20	
EMYKTDLEK	2	Acetyl (K)	1197.5587	0.55874023	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	1	2	46.619	37.047	2	0.0018155	20909	160513_QHF_FH_JSI11Kac_3	86.898	36.858			0.52104	0.87236	31.52	5	0	Linear	NaN	NaN	NaN	0	0	Median	0.77068	0.91531	2.5642	2	0	Median	0.44301	0.43903	NaN	1	0	Median	0.78685	0.85136	3.446	2	0	Median	88828000	52316000	36512000	0	0	0	29059000	16491000	12568000	38564000	23327000	15237000	21204000	12498000	8706200	12999	870	12319	79610;79611;79612;79613;79614	107543;107544;107545;107546;107547;107548;107549;107550;107551	107546	574		9	
EMYKTDLEK	2	Acetyl (K);Oxidation (M)	1213.5537	0.55365485	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	1	1		By MS/MS		By MS/MS	12.5	0.5					1	1					1		1	37.584	28.848	2	0.04849	13736	160513_QHF_FH_JSI12Kac_2	34.387	12.15			1.4407	1.6282	86.098	2	1	Median	NaN	NaN	NaN	0	0	Median	2.514	2.993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82562	0.88575	NaN	1	0	Median	24530000	7135800	17395000	0	0	0	21598000	5569400	16029000	0	0	0	2932100	1566400	1365600	13000	870	12319	79615;79616	107552;107553	107553	574		2	
ENAALLTANGLHLSQNR	0	Unmodified	1820.9493	0.94930842	3522	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.86	55.613	3	0.019503	47798	160511_QHF_FH_JSI12i_3	30.712	24.414			0.72421	0.73324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72421	0.73324	NaN	1	0	Median	35041000	18141000	16900000	0	0	0	0	0	0	0	0	0	35041000	18141000	16900000	13001	3522	12320	79617	107554	107554			1	
ENAEQGEVDMESHR	0	Unmodified	1629.6689	0.6689124	1049	P14209	CD99	CD99 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	3.88	8	1					1			2	3	2	3	16.828	15.629	2;3	2.3243E-82	13035	160511_QHF_FH_JSI11i_1	252.13	248.64			1.0655	1.0899	11.652	10	1	Median	1.1312	0.93974	0.99181	2	0	Median	0.99967	1.1762	14.803	3	1	Plateau	1.0669	1.0392	6.0872	2	0	Median	1.0781	1.1499	8.1818	3	0	Median	3334900000	1674600000	1660300000	687120000	308710000	378410000	1157100000	609920000	547170000	659340000	327000000	332340000	831340000	428950000	402380000	13002	1049	12321	79618;79619;79620;79621;79622;79623;79624;79625;79626;79627	107555;107556;107557;107558;107559;107560;107561;107562;107563;107564;107565;107566;107567;107568;107569;107570;107571;107572;107573	107558			19	
ENAEQGEVDMESHR	0	Oxidation (M)	1645.6638	0.66382702	1049	P14209	CD99	CD99 antigen	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	16.058	15.619	2;3	1.4695E-05	12996	160511_QHF_FH_JSI9i_1	130.1	122.72			1.4428	1.1843	28.091	5	2	Median	1.4428	1.1843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3378	1.3022	29.155	2	1	Median	1.2574	1.2737	47.385	2	0	Median	334130000	153900000	180230000	24138000	5728800	18409000	0	0	0	215660000	107540000	108120000	94324000	40623000	53700000	13003	1049	12321	79628;79629;79630;79631;79632	107574;107575;107576;107577	107577		669	4	
ENAEVDGDDDAEEMEAK	1	Unmodified	1865.7109	0.71089637	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	30.349	29.66	2	4.0158E-11	26550	160511_QHF_FH_JSI12i_1	151.56	145.84			1.13	1.093	42.202	3	2	Median	2.7494	2.2444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.13	1.093	NaN	1	1	Median	0.99702	1.0688	NaN	1	0	Median	80745000	33852000	46893000	17705000	4056500	13649000	0	0	0	18969000	6105200	12863000	44071000	23690000	20380000	13004	832	12322	79633;79634;79635	107578;107579;107580;107581	107580			4	
ENAEVGTTSNGYK	1	Unmodified	1368.6157	0.61573784	2189	Q02487	DSC2	Desmocollin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.751	14.226	2	1.3457E-16	11781	160511_QHF_FH_JSI10i_1	132.03	92.091			1.0334	0.98836	9.9953	3	0	Median	1.2944	1.1008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0334	0.98836	NaN	1	0	Median	0.87749	0.90156	NaN	1	0	Median	104050000	49969000	54082000	36788000	15242000	21546000	0	0	0	32963000	16295000	16668000	34300000	18433000	15867000	13005	2189	12323	79636;79637;79638;79639	107582;107583;107584;107585;107586;107587	107585			6	
ENAGALR	0	Unmodified	729.37695	0.37695154	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.5534	6.4422	2	0.016301	4173	160511_QHF_FH_JSI11i_1	63.287	29.434			0.88991	0.85387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88991	0.85387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	329930000	187160000	142770000	0	0	0	0	0	0	329930000	187160000	142770000	0	0	0	13006	4197	12324	79640;79641	107588;107589	107588			2	
ENAGVDPTLAIPMIQK	1	Unmodified	1695.8866	0.88655673	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	82.652	82.184	2	5.6255E-05	74909	160511_QHF_FH_JSI11i_1	80.522	64.983			0.56697	0.55758	35.014	4	4	Median	0.3499	0.2977	NaN	1	1	Median	0.56981	0.65687	NaN	1	1	Median	0.56634	0.54592	NaN	1	1	Median	0.5676	0.5695	NaN	1	1	Median	120340000	81851000	38493000	32463000	22786000	9676600	27020000	18812000	8208000	33440000	20627000	12813000	27421000	19626000	7794400	13007	3906	12325	79642;79643;79644;79645;79646	107590;107591;107592;107593;107594	107591			5	
ENAHFSISESLIAAIELMK	1	Oxidation (M)	2118.0667	0.066705942	3863	Q92622	KIAA0226	Run domain Beclin-1 interacting and cysteine-rich containing protein	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			85.667	85.083	2	0.0073071	75637	160511_QHF_FH_JSI10i_2	52.555	38.876			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13008	3863	12326	79647	107595	107595		2316	1	
ENALDRAEQAEADK	1	Unmodified	1558.7223	0.72232817	929	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	28.167	27.596	3	0.00031401	23036	160511_QHF_FH_JSI12i_2	68.944	0			0.85632	0.8326	16.02	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85632	0.8326	NaN	1	0	Median	0.98942	1.0507	12.35	2	0	Median	208760000	108590000	100170000	0	0	0	0	0	0	81874000	40736000	41138000	126890000	67858000	59030000	13009	929	12327	79648;79649;79650	107596;107597;107598;107599;107600	107596			5	
ENALDRAEQAEADKK	2	Unmodified	1686.8173	0.81729119	929	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	3	1	24.017	23.5	3;4	0.00011554	19806	160511_QHF_FH_JSI11i_3	112.16	0			1.0546	0.96805	27.165	8	3	Median	1.2344	1.0424	16.054	2	1	Median	0.84708	1.0352	36.637	2	1	Median	1.0285	1.0071	23.52	3	0	Median	0.59727	0.61851	NaN	1	1	Median	1901700000	900300000	1001400000	400730000	172250000	228490000	519240000	280050000	239190000	798360000	371540000	426820000	183330000	76468000	106860000	13010	929	12328	79651;79652;79653;79654;79655;79656;79657;79658	107601;107602;107603;107604;107605;107606;107607;107608;107609	107602			9	
ENALLELSK	1	Unmodified	1015.555	0.55497548	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	51.835	51.074	2	0.0038353	45368	160511_QHF_FH_JSI9i_1	58.592	26.658			0.94103	0.90655	21.769	3	0	Median	0.94103	0.76735	NaN	1	0	Median	0.7617	0.90655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.1816	NaN	1	0	Median	148040000	74808000	73232000	34662000	17793000	16869000	60792000	34280000	26512000	0	0	0	52586000	22735000	29851000	13011	3854	12329	79659;79660;79661	107610;107611;107612	107612			3	
ENALSELDVPFK	1	Unmodified	1360.6874	0.68744622	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	79.273	78.749	2	0.002011	71642	160511_QHF_FH_JSI12i_1	72.531	48.501			4.114	4.2019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.114	4.2019	NaN	1	1	Median	54992000	11756000	43236000	0	0	0	0	0	0	0	0	0	54992000	11756000	43236000	13012	3196	12330	79662	107613	107613			1	
ENALSSGTLQEEQR	0	Unmodified	1560.738	0.73797824	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.627	28.709	2	0.00038214	25641	160511_QHF_FH_JSI12i_1	76.533	61.843			0.97563	0.89496	29.378	2	1	Median	0.90075	0.72709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0567	1.1016	NaN	1	0	Median	38935000	22973000	15962000	18914000	11318000	7595700	0	0	0	0	0	0	20022000	11655000	8366800	13013	2309	12331	79663;79664	107614;107615;107616	107614			3	
ENALVQMADANQAQLAMNHLSGQR	0	Unmodified	2609.2439	0.24385223	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.362	75.515	3	2.2905E-35	66393	160511_QHF_FH_JSI11i_2	182.33	171.5			1.0189	1.0966	4.2972	4	0	Median	1.3073	1.0951	NaN	1	0	Median	0.95406	1.1782	NaN	1	0	Median	1.0786	1.0981	NaN	1	0	Median	0.96249	1.0653	NaN	1	0	Median	393780000	190060000	203720000	74126000	29915000	44210000	77751000	43214000	34538000	164260000	78344000	85913000	77646000	38589000	39057000	13014	724	12332	79665;79666;79667;79668	107617;107618;107619;107620;107621;107622;107623;107624;107625;107626	107623			10	
ENALVQMADGNQAQLAMSHLNGHK	1	Unmodified	2576.2224	0.22238851	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	67.868	67.218	3;4	1.3227E-51	57944	160511_QHF_FH_JSI12i_3	199.04	195.58			0.95542	0.95823	5.1237	12	0	Median	1.0767	0.91008	0.85481	2	0	Median	0.80314	0.97773	4.1118	2	0	Median	1.0291	0.99545	3.7607	4	0	Median	0.97926	0.9508	5.2722	4	0	Linear	7035000000	3360900000	3674100000	857120000	410210000	446900000	722520000	386200000	336320000	2635000000	1125800000	1509300000	2820300000	1438700000	1381600000	13015	1281	12333	79669;79670;79671;79672;79673;79674;79675;79676;79677;79678;79679;79680	107627;107628;107629;107630;107631;107632;107633;107634;107635;107636;107637;107638;107639;107640;107641;107642;107643;107644;107645;107646;107647;107648;107649;107650;107651;107652;107653;107654;107655;107656;107657;107658;107659;107660	107659			34	
ENALVQMADGNQAQLAMSHLNGHK	1	Oxidation (M)	2592.2173	0.21730313	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			10									4	6	54.56	54.427	3;4	5.3395E-13	46180	160511_QHF_FH_JSI12i_3	104.67	98.305			0.73518	0.75513	37.728	8	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2545	1.171	39.805	3	2	Plateau	0.74373	0.75847	39.127	5	3	Median	728770000	429680000	299090000	0	0	0	0	0	0	279010000	157930000	121090000	449760000	271750000	178010000	13016	1281	12333	79681;79682;79683;79684;79685;79686;79687;79688;79689;79690	107661;107662;107663;107664;107665;107666;107667;107668;107669;107670;107671	107667		913;914	10	
ENAPAIIFIDEIDAIATK	1	Unmodified	1943.0252	0.025158703	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	3	2	102.86	102.77	2;3	2.4058E-66	88653	160511_QHF_FH_JSI12i_2	233.78	209.49			0.98383	0.98687	13.187	10	0	Median	1.0692	0.92707	0.50499	2	0	Median	0.86567	1.0855	18.561	3	0	Plateau	0.96286	0.9782	11.992	3	0	Plateau	1.0157	1.1312	6.6054	2	0	Median	1469600000	733520000	736060000	248660000	118310000	130350000	255330000	145930000	109400000	582550000	280380000	302170000	383030000	188900000	194140000	13017	1567	12334	79691;79692;79693;79694;79695;79696;79697;79698;79699;79700	107672;107673;107674;107675;107676;107677;107678;107679;107680;107681;107682;107683;107684;107685;107686;107687;107688	107676			17	
ENAQDTMR	0	Unmodified	963.40799	0.40799367	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		6.6113	6.2808	2	0.0039938	4249	160511_QHF_FH_JSI10i_1	70.056	40.907			0.98018	0.87096	14.508	3	1	Median	0.98018	0.78875	NaN	1	1	Median	0.71947	0.87096	NaN	1	0	Median	1.0859	1.0496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	221280000	120270000	101010000	60421000	34250000	26171000	80470000	45088000	35382000	80388000	40928000	39460000	0	0	0	13018	3660	12335	79701;79702;79703	107689;107690;107691	107689			3	
ENASAGVER	0	Unmodified	931.43592	0.43592298	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					2	2	1	6.4877	2.0613	2	0.003976	2586	160513_QHF_FH_JSI11Kac_3	71.451	38.61			0.86085	0.93602	9.8479	5	2	Median	NaN	NaN	NaN	0	0	Median	0.77802	0.922	15.747	2	1	Median	0.9005	0.87922	8.8538	2	1	Median	0.89413	0.96545	NaN	1	0	Median	1102700000	490200000	612450000	0	0	0	594500000	244700000	349800000	502150000	242580000	259560000	6008900	2921800	3087000	13019	1730	12336	79704;79705;79706;79707;79708	107692;107693;107694;107695;107696;107697;107698	107693			7	
ENASQCFEK	1	Unmodified	1111.4604	0.46042317	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.351	12.938	2	0.013241	10713	160511_QHF_FH_JSI12i_1	46.462	32.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13020	3115	12337	79709	107699	107699			1	
ENAYDLEANLAVLK	1	Unmodified	1561.7988	0.79878758	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	82.879	82.476	2;3	1.3836E-52	75094	160511_QHF_FH_JSI12i_1	195.77	160.26			1.0649	1.1101	4.4648	5	5	Median	1.3543	1.1101	NaN	1	1	Median	1.0044	1.156	6.4719	2	2	Median	1.1675	1.1225	NaN	1	1	Median	1.0257	1.0742	NaN	1	1	Median	827830000	421740000	406090000	106620000	46479000	60139000	366100000	202480000	163610000	156980000	66119000	90861000	198130000	106650000	91477000	13021	5247	12338	79710;79711;79712;79713;79714;79715;79716;79717	107700;107701;107702;107703;107704;107705;107706;107707	107703			8	
ENDAHLVEVNLNNIK	1	Unmodified	1720.8744	0.87441214	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	60.624	59.453	2	1.8627E-12	51041	160511_QHF_FH_JSI12i_2	115.14	91.285			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13022	5130	12339	79718;79719;79720	107708;107709;107710	107709			3	
ENDASNIDGFLGPWAK	1	Unmodified	1732.8057	0.80566387	424	O60508	CDC40	Pre-mRNA-processing factor 17	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	88.555	88.242	2	4.196E-07	80392	160511_QHF_FH_JSI12i_1	90.412	79.507			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13023	424	12340	79721;79722;79723	107711;107712;107713	107712			3	
ENDAVTIQVLNQLIQK	1	Unmodified	1824.9945	0.99452728	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		101.15	101.04	3	6.7621E-12	89209	160511_QHF_FH_JSI9i_1	154.6	133.86			1.0134	1.1594	23.225	3	0	Plateau	0.92547	0.75937	NaN	1	0	Median	1.0134	1.1748	NaN	1	0	Median	1.1024	1.0842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	359360000	175720000	183640000	70470000	35667000	34803000	151210000	76562000	74646000	137680000	63487000	74191000	0	0	0	13024	4212	12341	79724;79725;79726	107714;107715;107716;107717	107717			4	
ENDFDRLVLQYAPSA	0	Unmodified	1736.837	0.836964	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	92.654	92.395	2	0.0027888	83870	160511_QHF_FH_JSI10i_1	73.624	59.718			1.0462	1.2465	13.164	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0462	1.2465	NaN	1	0	Median	1.609	1.5717	NaN	1	0	Median	1.2164	1.2562	NaN	1	0	Median	167140000	72952000	94186000	0	0	0	76804000	34959000	41845000	43625000	15261000	28364000	46709000	22731000	23978000	13025	178	12342	79727;79728;79729	107718;107719;107720;107721;107722	107722			5	
ENDIKPLTSFR	1	Unmodified	1318.6881	0.68811492	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		43.189	43.189	3	0.017637	38129	160511_QHF_FH_JSI11i_3	42.789	27.913			0.83803	0.77628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83803	0.77628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	156150000	71900000	84252000	0	0	0	0	0	0	156150000	71900000	84252000	0	0	0	13026	2571	12343	79730	107723	107723			1	
ENDIKPLTSFR	1	Acetyl (K)	1360.6987	0.69867961	2571	Q14739	LBR	Lamin-B receptor	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			70.66	60.019	2	0.0055573	32159	160513_QHF_FH_JSI10Kac_4	69.979	34.755			0.1007	0.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1007	0.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3835800	3667000	168800	0	0	0	3835800	3667000	168800	0	0	0	0	0	0	13027	2571	12343	79731	107724	107724	2543		1	
ENDKTEEMPNDSVLENK	2	Unmodified	1990.879	0.87896475	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	37.128	36.648	2	0.00020173	32814	160511_QHF_FH_JSI10i_1	104.98	74.148			1.2482	1.2913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2482	1.2913	NaN	1	1	Median	28188000	7323000	20865000	0	0	0	8984800	0	8984800	0	0	0	19203000	7323000	11880000	13028	1649	12344	79732;79733	107725;107726	107726			2	
ENDPEANIDTIYDR	0	Unmodified	1663.7326	0.73255851	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		52.119	51.706	2	4.2356E-05	46881	160511_QHF_FH_JSI11i_1	78.324	51.651			1.1892	1.1414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1892	1.1414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37517000	16048000	21470000	0	0	0	0	0	0	37517000	16048000	21470000	0	0	0	13029	2584	12345	79734;79735	107727;107728	107728			2	
ENDPSSVLLFLVGSK	1	Unmodified	1603.8457	0.84573777	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		96.393	86.193	2	6.383E-05	43521	160513_QHF_FH_JSI11Kac_5	101.6	86.905			0.95618	0.94941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95618	0.94941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4496900	2521900	1975100	0	0	0	0	0	0	4496900	2521900	1975100	0	0	0	13030	4562	12346	79736	107729;107730	107730			2	
ENDPSSVLLFLVGSKK	2	Unmodified	1731.9407	0.94070079	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.77		2	1						4	2	1	2	2	94.079	89.308	3	7.3567E-09	45359	160513_QHF_FH_JSI11Kac_6	118.72	107.95			1.0844	1.0536	19.087	7	0	Median	1.3316	1.1406	1.7104	2	0	Median	0.81488	0.97165	NaN	1	0	Median	0.9311	0.90071	22.172	2	0	Median	1.0434	1.0883	32.081	2	0	Median	399700000	190120000	209580000	92521000	38039000	54483000	63334000	36850000	26484000	93075000	47117000	45958000	150770000	68115000	82658000	13031	4562	12347	79737;79738;79739;79740;79741;79742;79743	107731;107732;107733;107734;107735;107736;107737	107732			7	
ENDWYLAYK	1	Unmodified	1200.5451	0.54513908	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	58.903	58.412	2	0.005564	53072	160511_QHF_FH_JSI12i_1	55.567	35.238			1.0481	1.1007	5.3232	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97988	1.1304	NaN	1	0	Median	1.0512	1.0202	NaN	1	0	Median	1.0481	1.1007	NaN	1	0	Median	261310000	123150000	138160000	0	0	0	84952000	40014000	44938000	98638000	44553000	54085000	77720000	38581000	39138000	13032	1557	12348	79744;79745;79746	107738	107738			1	
ENDYYTPTGEFR	0	Unmodified	1490.6314	0.6313879	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	45.196	44.414	2	2.0533E-16	40286	160511_QHF_FH_JSI12i_1	166.69	152.53			0.86558	0.93218	33.425	5	1	Median	0.78819	0.64505	52.071	2	1	Median	0.81974	0.96103	NaN	1	0	Median	1.0115	0.97923	NaN	1	0	Median	0.86558	0.87992	NaN	1	0	Median	487040000	238680000	248370000	90155000	43637000	46518000	122430000	66293000	56138000	161300000	78023000	83282000	113150000	50722000	62428000	13033	1602	12349	79747;79748;79749;79750;79751	107739;107740;107741;107742;107743;107744;107745	107741			7	
ENEALLLR	0	Unmodified	956.5291	0.52909508	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.941	38.511	2	0.013131	35009	160511_QHF_FH_JSI12i_1	61.691	12.122			1.4249	1.675	11.964	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4249	1.675	NaN	1	0	Median	1.5815	1.5398	NaN	1	1	Median	1.3048	1.3228	NaN	1	1	Median	619120000	303280000	315840000	0	0	0	171680000	76665000	95017000	263330000	134190000	129150000	184100000	92426000	91678000	13034	3965	12350	79752;79753;79754	107746;107747;107748	107747			3	
ENEDQVVK	1	Unmodified	959.45599	0.45598972	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	1	3	2	10.064	8.3181	2	0.0025749	6851	160511_QHF_FH_JSI11i_1	79.059	35.84			1.1574	0.96516	22.134	5	3	Median	1.1821	0.96516	NaN	1	0	Median	1.1574	1.3474	NaN	1	1	Median	0.86221	0.82825	1.5449	2	1	Median	1.1655	1.2079	NaN	1	1	Median	610360000	310420000	299940000	125070000	57243000	67829000	139040000	77453000	61585000	219910000	115570000	104340000	126340000	60154000	66187000	13035	10	12351	79755;79756;79757;79758;79759;79760;79761	107749;107750;107751;107752;107753;107754;107755;107756;107757	107749			9	
ENEELKQR	1	Unmodified	1044.52	0.51998696	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		6.2437	6.0482	3	0.028599	3885	160511_QHF_FH_JSI11i_2	33.396	1.9412			1.4246	1.4308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4246	1.4308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104730000	36945000	67785000	0	0	0	0	0	0	104730000	36945000	67785000	0	0	0	13036	1016	12352	79762	107758	107758			1	
ENEFSFEDNAIR	0	Unmodified	1469.6423	0.64228694	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		56.921	56.267	2	0.00014146	50766	160511_QHF_FH_JSI10i_1	100.72	82.41			0.81838	0.71139	7.7906	3	3	Plateau	0.85483	0.71139	NaN	1	1	Median	0.54825	0.65546	NaN	1	1	Median	0.78086	0.76592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	446070000	263950000	182120000	142730000	74006000	68720000	129950000	85050000	44903000	173390000	104890000	68500000	0	0	0	13037	2578	12353	79763;79764;79765	107759;107760;107761	107760			3	
ENEMLVTVAHFHK	1	Unmodified	1553.766	0.76604767	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	9.78	6.96		4							5	2	3	2	2	57.717	52.236	3;4	0.00031008	27708	160513_QHF_FH_JSI9Kac_6	68.83	63.939			1.1239	1.2084	23.463	9	1	Median	1.3046	1.1105	21.006	2	0	Median	1.0071	1.2084	31.836	3	1	Median	0.98562	0.97881	10.532	2	0	Median	1.2504	1.3442	4.566	2	0	Median	241960000	106760000	135200000	49138000	18952000	30186000	116120000	50832000	65286000	52046000	26958000	25089000	24656000	10018000	14639000	13038	3922	12354	79766;79767;79768;79769;79770;79771;79772;79773;79774	107762;107763;107764	107763			3	
ENERPSAGSK	1	Unmodified	1073.5102	0.51015055	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	1.67	0.471	1	2								1	1		1	4.6956	4.1775	3	0.0022715	2258	160511_QHF_FH_JSI10i_2	44.612	32.115			0.79735	0.96824	49.213	3	1	Plateau	3.1354	2.5894	NaN	1	0	Median	0.79735	0.96824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4466	1.6295	NaN	1	1	Median	453430000	219070000	234370000	43991000	13070000	30921000	258920000	136950000	121960000	0	0	0	150530000	69044000	81481000	13039	5295	12355	79775;79776;79777	107765;107766	107766			2	
ENESLTHSTDR	0	Unmodified	1287.5691	0.569122	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	7.6355	7.2661	2;3	0.00014148	5010	160511_QHF_FH_JSI12i_2	83.862	67.659			1.1311	1.2	35.304	4	0	Median	1.8436	1.6247	NaN	1	0	Median	0.59256	0.70235	NaN	1	0	Median	1.2745	1.2818	NaN	1	0	Median	1.0039	1.1233	NaN	1	0	Median	189340000	87838000	101500000	30511000	14025000	16486000	94507000	45219000	49288000	33998000	13654000	20344000	30325000	14941000	15385000	13040	3805	12356	79778;79779;79780;79781	107767;107768;107769;107770;107771;107772	107768			6	
ENEVEEVK	1	Unmodified	974.45566	0.45565537	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					2	2	2	3	12.708	11.557	1;2	0.00011206	9433	160511_QHF_FH_JSI11i_1	128.36	55.101			1.093	1.1308	28.913	9	1	Median	1.0335	0.86091	14.492	2	1	Median	1.2958	1.5039	23.696	2	0	Median	1.1716	1.1436	0.31331	2	0	Median	0.7891	0.84601	25.509	3	0	Median	6724500000	3290000000	3434500000	1779500000	922450000	857070000	1358400000	599900000	758500000	1850700000	941390000	909320000	1735800000	826260000	909570000	13041	3609	12357	79782;79783;79784;79785;79786;79787;79788;79789;79790	107773;107774;107775;107776;107777;107778;107779;107780;107781;107782;107783;107784	107774			9	
ENEVEEVKEEGPK	2	Unmodified	1514.71	0.71003215	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.54	8	3					1			3	4	2	3	23.953	22.499	2;3	2.8524E-40	19611	160511_QHF_FH_JSI10i_1	206.53	172.67			0.99941	0.94687	19.509	11	3	Median	1.0127	0.86112	4.0251	3	1	Median	0.9284	1.0789	23.674	3	2	Median	0.95359	0.91347	5.0779	2	0	Median	1.2106	1.2111	8.1995	3	0	Plateau	4219500000	2233400000	1986200000	984420000	386610000	597810000	345670000	178120000	167540000	1246000000	747470000	498480000	1643500000	921160000	722310000	13042	3609	12358	79791;79792;79793;79794;79795;79796;79797;79798;79799;79800;79801;79802	107785;107786;107787;107788;107789;107790;107791;107792;107793;107794;107795;107796;107797;107798;107799;107800;107801	107793			17	
ENEVEEVKEEGPK	2	Acetyl (K)	1556.7206	0.72059684	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	50.504	41.203	2	0.029178	18907	160513_QHF_FH_JSI12Kac_2	67.153	22.965			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13043	3609	12358	79803	107802	107802			1	
ENEVLEAWK	1	Unmodified	1116.5451	0.54513908	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		51.091	50.677	2	0.0095814	45738	160511_QHF_FH_JSI11i_1	60.102	32.972			1.0672	1.0391	52.3	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0672	1.0391	52.3	2	1	Median	NaN	NaN	NaN	0	0	Median	143250000	69347000	73902000	0	0	0	0	0	0	143250000	69347000	73902000	0	0	0	13044	2162	12359	79804;79805	107803;107804	107804			2	
ENEVQSLHSK	1	Unmodified	1169.5677	0.56766543	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.65	1	8					1			2	2	2	4	10.226	9.0601	2;3	1.0357E-06	6938	160511_QHF_FH_JSI12i_2	125.75	104.3			0.94668	1.0038	9.1994	10	2	Median	1.1366	0.99865	0.94427	2	0	Median	0.83724	1.0252	3.1935	2	0	Median	0.94668	0.95393	3.6249	2	1	Median	0.99589	1.0969	12.221	4	1	Median	927890000	463970000	463910000	162940000	87180000	75765000	188820000	104680000	84139000	313810000	145160000	168650000	262310000	126950000	135360000	13045	3328	12360	79806;79807;79808;79809;79810;79811;79812;79813;79814;79815	107805;107806;107807;107808;107809;107810;107811;107812;107813;107814;107815	107806			10	
ENFCNIHVSLVPQLSATGEQK	1	Unmodified	2370.1638	0.16379422	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.958	77.756	3	1.7733E-05	67194	160511_QHF_FH_JSI12i_2	68.49	55.826			0.95134	1.0213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95134	1.0213	NaN	1	1	Median	22975000	10692000	12283000	0	0	0	0	0	0	0	0	0	22975000	10692000	12283000	13046	4951	12361	79816	107816	107816			1	
ENFCNIHVSLVPQPSSTGEQK	1	Unmodified	2370.1274	0.12740872	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	65.239	64.496	3	5.6391E-13	57043	160511_QHF_FH_JSI10i_2	113.51	97.009			0.92661	1.0478	20.605	4	1	Median	NaN	NaN	NaN	0	0	Median	0.94383	1.1754	NaN	1	0	Median	0.81636	0.81471	NaN	1	0	Median	1.031	1.0912	21.986	2	1	Median	183750000	99074000	84680000	0	0	0	40377000	23020000	17357000	63621000	36420000	27200000	79756000	39633000	40123000	13047	1126	12362	79817;79818;79819;79820;79821;79822;79823	107817;107818;107819;107820;107821;107822;107823;107824;107825;107826;107827	107826			11	
ENFNNVPDLELNPIR	0	Unmodified	1782.8901	0.89006221	3992	Q96BS2	TESC	Calcineurin B homologous protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			80.509	80.002	2	7.4833E-07	72607	160511_QHF_FH_JSI10i_1	165.7	133.17			1.1434	1.0996	49.297	2	2	Median	0.95241	0.776	NaN	1	1	Median	1.3728	1.5583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51775000	27068000	24706000	26849000	15488000	11361000	24926000	11581000	13345000	0	0	0	0	0	0	13048	3992	12363	79824;79825	107828;107829	107828			2	
ENFQKPGNVK	2	Unmodified	1159.5986	0.59857163	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.317	14.317	3	0.033286	11562	160511_QHF_FH_JSI11i_3	34.803	19.927			0.49774	0.47263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49774	0.47263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56615000	33390000	23225000	0	0	0	0	0	0	56615000	33390000	23225000	0	0	0	13049	4451	12364	79826	107830	107830			1	
ENFQKPGNVK	2	Acetyl (K)	1201.6091	0.60913632	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	1	0	0	1			By MS/MS		13.5	0.5						1	1					2		40.42	30.896	2	0.0030356	17946	160513_QHF_FH_JSI11Kac_3	76.465	49.211			0.32648	0.32101	14.045	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32648	0.32101	14.045	2	1	Median	NaN	NaN	NaN	0	0	Median	10697000	8091200	2606000	0	0	0	0	0	0	10697000	8091200	2606000	0	0	0	13050	4451	12364	79827;79828	107831;107832	107831	3166		2	
ENFQNWLK	1	Unmodified	1077.5243	0.52434406	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.49	4	4					1	4		3	3	3	4	62.908	58.308	2	0.00047596	51351	160511_QHF_FH_JSI10i_2	107.01	87.752			0.88917	0.89043	15.186	13	2	Median	1.1117	0.90982	15.927	3	0	Median	0.74518	0.8838	21.515	3	1	Median	1.0469	1.0221	12.845	3	1	Median	1.0309	0.88523	15.757	4	0	Linear	6687700000	3441100000	3246600000	1361300000	616090000	745160000	1407900000	860470000	547480000	2553100000	1262200000	1290900000	1365400000	702340000	663100000	13051	1470	12365	79829;79830;79831;79832;79833;79834;79835;79836;79837;79838;79839;79840;79841	107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844;107845;107846;107847;107848;107849;107850;107851;107852	107851			20	
ENFSCLTR	0	Unmodified	1025.46	0.46002924	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0		By matching	By MS/MS		14	0							2				1	1		39.243	29.446	2	0.040688	18023	160513_QHF_FH_JSI11Kac_4	46.462	33.425			0.90525	0.98584	13.871	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90083	1.0874	NaN	1	0	Median	0.90968	0.89373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20997000	10374000	10623000	0	0	0	4517000	2360500	2156600	16480000	8013200	8466600	0	0	0	13052	1503	12366	79842;79843	107853	107853			1	
ENFVAEIQK	1	Unmodified	1076.5502	0.55022446	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	46.268	45.741	2	0.045356	41607	160511_QHF_FH_JSI12i_1	45.161	15.688			1.1101	1.1064	49.903	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80103	0.77746	NaN	1	1	Median	1.5385	1.5746	NaN	1	1	Median	136250000	72002000	64250000	0	0	0	0	0	0	81542000	53643000	27900000	54710000	18360000	36350000	13053	1666	12367	79844;79845	107854;107855	107855			2	
ENGAAALDGR	0	Unmodified	972.46247	0.46247208	1891	P57105	SYNJ2BP	Synaptojanin-2-binding protein	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	12.111	11.707	2	0.037587	9173	160511_QHF_FH_JSI9i_1	54.539	23.31			0.97796	1.0093	26.053	4	0	Median	1.2938	1.0375	NaN	1	0	Median	0.8291	0.98186	NaN	1	0	Median	1.1535	1.1097	NaN	1	0	Median	0.58448	0.62469	NaN	1	0	Median	215930000	111030000	104890000	41020000	16554000	24466000	62372000	30402000	31969000	51898000	23352000	28547000	60636000	40724000	19911000	13054	1891	12368	79846;79847;79848;79849	107856	107856			0	
ENGAFTVLVDNYVK	1	Unmodified	1567.7882	0.7882229	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.722	6	5	2							3	2	4	4	84.916	84.331	2;3	3.3936E-05	72814	160511_QHF_FH_JSI12i_2	77.776	71.694			0.8878	0.86672	17.735	11	4	Median	1.1158	0.95073	18.05	2	1	Median	0.8616	1.0407	26.918	2	0	Median	0.86601	0.84137	14.859	4	2	Median	0.82597	0.88941	19.041	3	1	Median	325340000	171980000	153360000	31487000	14110000	17377000	35393000	19224000	16168000	108380000	53988000	54395000	150070000	84655000	65418000	13055	1520	12369	79850;79851;79852;79853;79854;79855;79856;79857;79858;79859;79860;79861;79862	107857;107858;107859;107860;107861;107862;107863;107864;107865;107866;107867;107868;107869;107870;107871;107872	107860			15	
ENGELLPILR	0	Unmodified	1152.6503	0.65027285	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	72.634	71.936	2	7.5282E-08	65470	160511_QHF_FH_JSI11i_1	123.6	80.682			1.0335	1.0371	12.043	8	3	Median	1.2251	1.0163	3.6622	2	1	Median	0.74979	0.89926	19.38	2	1	Median	1.0286	1.0273	14.087	2	1	Median	1.0335	1.1013	1.3913	2	0	Median	1107900000	573130000	534800000	214290000	96070000	118220000	288230000	170520000	117710000	366100000	182800000	183300000	239300000	123730000	115570000	13056	595	12370	79863;79864;79865;79866;79867;79868;79869;79870	107873;107874;107875;107876;107877;107878;107879;107880;107881;107882;107883;107884	107874			12	
ENGELLPILRGEN	0	Unmodified	1452.7573	0.75725712	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1.67	0.471	1	2								2			1	73.447	72.403	2	0.0024279	63803	160511_QHF_FH_JSI9i_2	131.82	107.79			0.53719	0.52301	13.512	2	2	Median	0.54526	0.47535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52924	0.57544	NaN	1	1	Median	94578000	66418000	28160000	36979000	25850000	11128000	0	0	0	0	0	0	57599000	40568000	17032000	13057	595	12371	79871;79872;79873	107885;107886;107887	107887			3	
ENGFIYFQK	1	Unmodified	1144.5553	0.55530983	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.75	6.76	2						1	1			2	2		62.988	57.364	2	0.0001215	51945	160511_QHF_FH_JSI11i_1	91.853	67.898			0.89291	1.18	24.198	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0227	1.2124	38.673	2	0	Median	1.2036	1.18	15.925	2	0	Median	NaN	NaN	NaN	0	0	Median	85379000	43524000	41855000	0	0	0	47128000	25500000	21628000	38251000	18024000	20227000	0	0	0	13058	2992	12372	79874;79875;79876;79877	107888;107889	107888			2	
ENGFSSPPQIK	1	Unmodified	1202.5932	0.5931519	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.003	36.386	2	0.0077042	32145	160511_QHF_FH_JSI9i_1	60.434	41.654			1.0539	1.2017	39.572	3	1	Median	1.5953	1.3019	NaN	1	1	Median	1.0539	1.2017	NaN	1	0	Median	0.64948	0.63246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91140000	43563000	47576000	21663000	7599800	14063000	35001000	17792000	17209000	34475000	18172000	16304000	0	0	0	13059	998	12373	79878;79879;79880	107890;107891;107892	107892			3	
ENGFSSPPQIKDEPEDDGYFVPPK	2	Unmodified	2691.234	0.23404186	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		67.843	67.485	3	8.4352E-05	61034	160511_QHF_FH_JSI10i_1	50.055	36.464			1.4385	1.5316	6.0146	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2424	1.4678	NaN	1	1	Median	1.6655	1.5982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78548000	40746000	37802000	0	0	0	42892000	23514000	19378000	35656000	17232000	18424000	0	0	0	13060	998	12374	79881;79882	107893;107894;107895	107894			3	
ENGFTQHVYHK	1	Unmodified	1358.6367	0.63674805	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	15.948	15.982	2;3	2.3928E-07	12691	160511_QHF_FH_JSI12i_3	115.78	97.036			0.77457	0.7803	1.9632	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7974	0.76277	NaN	1	0	Median	0.76896	0.78671	1.1575	2	1	Median	157090000	86042000	71052000	0	0	0	0	0	0	30620000	14384000	16237000	126470000	71658000	54815000	13061	3132	12375	79883;79884;79885;79886	107896;107897;107898;107899;107900	107900			5	
ENGGTEPDASAPAEPGWK	1	Unmodified	1811.7962	0.7962214	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	38.219	37.613	2	6.4595E-07	34099	160511_QHF_FH_JSI12i_1	90.759	77.096			0.80427	0.79168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80427	0.79168	NaN	1	1	Median	11681000	6915300	4766100	0	0	0	0	0	0	0	0	0	11681000	6915300	4766100	13062	3356	12376	79887;79888	107901;107902	107902			2	
ENGLEVLQEAFSR	0	Unmodified	1490.7365	0.73652168	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	91.263	90.661	2	0.0003066	79672	160511_QHF_FH_JSI11i_2	73.466	59.308			1.0853	1.0669	23.19	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.68495	0.85009	NaN	1	1	Median	0.86391	0.88116	NaN	1	0	Median	1.1804	1.2917	NaN	1	0	Median	66588000	37055000	29533000	0	0	0	24007000	15833000	8174300	20421000	10972000	9449400	22159000	10250000	11909000	13063	486	12377	79889;79890;79891	107903;107904;107905	107904			3	
ENGLPLEYQEK	1	Unmodified	1318.6405	0.64049603	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	46.303	43.942	2	4.98E-23	39495	160511_QHF_FH_JSI11i_1	171.85	152.76			1.3512	1.2346	19.128	5	0	Median	1.5078	1.2346	NaN	1	0	Median	1.3512	1.5473	NaN	1	0	Median	1.4475	1.4082	NaN	1	0	Median	0.99648	1.0634	18.493	2	0	Median	1222300000	536150000	686150000	221720000	78400000	143320000	322880000	151020000	171870000	356050000	144580000	211470000	321640000	162150000	159490000	13064	494	12378	79892;79893;79894;79895;79896	107906;107907;107908;107909;107910;107911;107912;107913;107914	107906			9	
ENGMDVFR	0	Unmodified	966.42292	0.42291545	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	37.461	36.85	2	0.0076141	33051	160511_QHF_FH_JSI11i_1	58.981	26.51			0.727	0.72584	7.0789	4	0	Median	0.98063	0.80909	NaN	1	0	Median	0.60882	0.70876	NaN	1	0	Median	0.73357	0.688	NaN	1	0	Median	0.72048	0.74332	NaN	1	0	Median	210250000	116450000	93801000	43891000	18204000	25687000	50196000	30521000	19675000	63836000	38053000	25784000	52330000	29675000	22655000	13065	1002	12379	79897;79898;79899;79900	107915	107915			1	
ENGNYIMYAR	0	Unmodified	1229.5499	0.54990688	188	O14672	ADAM10	Disintegrin and metalloproteinase domain-containing protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.0874	5.9159	2	0.0010429	3749	160511_QHF_FH_JSI11i_1	73.26	46.006			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13066	188	12380	79901;79902	107916;107917	107916			2	
ENGPVVETVQVPLSK	1	Unmodified	1594.8566	0.85663681	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.278	61.643	2	2.6793E-21	54621	160511_QHF_FH_JSI9i_1	173.59	152.76			1.1668	0.90802	7.9774	4	0	Linear	1.1605	0.95028	NaN	1	0	Median	0.78461	0.90714	NaN	1	0	Median	0.81169	0.79058	NaN	1	0	Median	0.89608	0.9089	NaN	1	0	Median	733250000	417110000	316140000	221710000	113920000	107790000	163780000	103640000	60131000	169870000	95975000	73896000	177900000	103570000	74322000	13067	3709	12381	79903;79904;79905;79906	107918;107919;107920;107921;107922;107923;107924;107925	107924			8	
ENGTGNMDEDLLVK	1	Unmodified	1533.6981	0.69808726	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		51.627	50.82	2	0.0013927	45125	160511_QHF_FH_JSI9i_1	77.185	58.917			1.1537	1.1414	3.3924	2	2	Median	1.3147	1.1144	NaN	1	1	Median	1.0124	1.1691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58329000	31325000	27004000	31140000	15360000	15780000	27190000	15965000	11224000	0	0	0	0	0	0	13068	1542	12382	79907;79908;79909	107926;107927;107928	107928			3	
ENGTVTAANASTLNDGAAALVLMTADAAK	1	Unmodified	2760.36	0.35998743	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	101.35	101.24	2;3	1.3304E-173	91961	160511_QHF_FH_JSI11i_1	297.76	287.42			0.90998	0.90195	11.061	5	0	Median	1.3009	1.055	NaN	1	0	Median	0.76432	0.90195	NaN	1	0	Median	0.8669	0.84662	8.5124	2	0	Median	0.96693	1.0125	NaN	1	0	Median	2200200000	1199400000	1000800000	421250000	176200000	245050000	519860000	317020000	202840000	672050000	363040000	309010000	587010000	343110000	243900000	13069	1249	12383	79910;79911;79912;79913;79914;79915	107929;107930;107931;107932;107933;107934	107930			6	
ENGTVTAANASTLNDGAAALVLMTADAAK	1	Oxidation (M)	2776.3549	0.35490205	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			93.792	93.782	3	0.00046158	85038	160511_QHF_FH_JSI10i_1	42.851	35.976			0.54952	0.5893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54952	0.5893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9864600	6534300	3330300	0	0	0	9864600	6534300	3330300	0	0	0	0	0	0	13070	1249	12383	79916	107935	107935		881	1	
ENGVHSLIIEPVTSR	0	Unmodified	1649.8737	0.87368386	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1			1	2	1	55.609	52.169	2;3	0.0015212	44864	160511_QHF_FH_JSI12i_2	51.591	46.274			0.73499	0.82829	36.981	4	3	Median	NaN	NaN	NaN	0	0	Median	0.90667	1.0758	NaN	1	1	Median	0.88095	0.84632	52.264	2	2	Median	0.57805	0.63776	NaN	1	0	Median	110130000	61226000	48908000	0	0	0	15569000	7935700	7633600	19807000	8638500	11169000	74758000	44652000	30106000	13071	3805	12384	79917;79918;79919;79920	107936;107937;107938;107939	107936			4	
ENGVTHPIDYHTTDYVDEIK	1	Unmodified	2345.0812	0.081170032	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	1	3	56.794	55.745	3;4	5.8334E-11	47840	160511_QHF_FH_JSI12i_2	126.22	117.93			0.91003	1.0078	22.19	8	1	Median	1.0994	0.93894	10.722	2	0	Median	0.81719	1.0087	0.82383	2	0	Median	1.0159	1.0531	NaN	1	0	Median	0.66136	0.7426	40.039	3	1	Plateau	571220000	300930000	270290000	109730000	64058000	45676000	152210000	83574000	68638000	92057000	48698000	43359000	217220000	104600000	112620000	13072	4279	12385	79921;79922;79923;79924;79925;79926;79927;79928	107940;107941;107942;107943;107944;107945;107946;107947;107948;107949;107950;107951;107952;107953;107954	107941			15	
ENGVTHPIDYHTTDYVDEIKK	2	Unmodified	2473.1761	0.17613305	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.733	51.498	5	0.055042	44190	160511_QHF_FH_JSI12i_3	8.676	0.68381			1.0015	1.0116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0015	1.0116	NaN	1	0	Median	55585000	31833000	23752000	0	0	0	0	0	0	0	0	0	55585000	31833000	23752000	13073	4279	12386	79929	107955	107955			0	
ENGVYLIDVK	1	Unmodified	1148.6077	0.60773933	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				2	4	2	2	61.725	58.142	2	8.2244E-07	51306	160511_QHF_FH_JSI9i_1	112.83	92.135			0.83086	0.73078	43.136	9	6	Plateau	0.90825	0.74246	10.038	2	1	Median	0.55755	0.66319	56.846	4	3	Linear	0.62727	0.60329	NaN	1	1	Median	0.84278	0.88309	27.879	2	1	Median	2814600000	1716300000	1098400000	752720000	431820000	320900000	921300000	574250000	347050000	603280000	387320000	215970000	537310000	322880000	214440000	13074	1192	12387	79930;79931;79932;79933;79934;79935;79936;79937;79938;79939	107956;107957;107958;107959;107960;107961;107962;107963;107964;107965;107966	107961			10	
ENHEFDGKK	2	Unmodified	1102.5043	0.5043369	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.2235	5.319	2	2.8022E-05	2848	160511_QHF_FH_JSI12i_3	103.55	67.151			1.0991	1.1291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0991	1.1291	NaN	1	0	Median	41221000	24308000	16913000	0	0	0	0	0	0	0	0	0	41221000	24308000	16913000	13075	228	12388	79940	107967	107967			1	
ENHFLIFVK	1	Unmodified	1145.6233	0.62332982	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	73.129	64.195	2;3	0.0001771	33587	160513_QHF_FH_JSI12Kac_6	79.16	64.953			1.0157	1.0625	27.331	7	1	Median	0.95995	0.80565	7.9051	2	0	Median	0.76593	0.91435	NaN	1	0	Median	1.1935	1.1484	8.4617	2	0	Median	1.2664	1.3625	35.165	2	1	Median	581720000	277220000	304500000	146640000	73569000	73075000	138930000	71752000	67179000	174740000	85198000	89539000	121410000	46702000	74706000	13076	2279	12389	79941;79942;79943;79944;79945;79946;79947	107968;107969;107970;107971;107972;107973;107974;107975;107976;107977;107978	107975			11	
ENIAEWK	1	Unmodified	888.43413	0.43413207	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.67	4.64	2	3					1			1	3	1	1	32.347	31.571	2	0.017321	27752	160511_QHF_FH_JSI10i_2	61.679	26.43			0.98502	1.1826	16.696	5	1	Median	1.6855	1.409	NaN	1	0	Median	0.97703	1.158	2.9641	2	1	Median	0.93512	0.90122	NaN	1	0	Median	1.118	1.2777	NaN	1	0	Median	587750000	290680000	297070000	62629000	28027000	34601000	302190000	142920000	159270000	157520000	81632000	75884000	65416000	38100000	27316000	13077	1008	12390	79948;79949;79950;79951;79952;79953	107979;107980;107981;107982;107983	107983			5	
ENIASVLENYHTESK	1	Unmodified	1732.8268	0.82679325	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	1	3	58.618	57.919	2;3	6.4874E-27	51165	160511_QHF_FH_JSI10i_2	145.17	119.23			0.53534	0.60322	93.812	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39041	0.3912	NaN	1	1	Median	1.0977	1.1933	96.483	2	1	Median	170740000	79801000	90939000	0	0	0	0	0	0	18508000	13195000	5313200	152230000	66606000	85625000	13078	3075	12391	79954;79955;79956;79957;79958	107984;107985;107986;107987;107988	107987			5	
ENIAYLTHTER	0	Unmodified	1345.6626	0.66262845	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			32.291	31.346	2	0.010603	27492	160511_QHF_FH_JSI10i_2	46.73	33.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13079	5229	12392	79959	107989	107989			1	
ENIDALEELK	1	Unmodified	1172.5925	0.5924832	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.05	4					4	2			1	5	2	2	64.997	58.838	2	3.451E-14	52694	160511_QHF_FH_JSI10i_1	162.36	132.88			1.0927	1.1171	26.99	9	0	Median	1.2792	1.0117	NaN	1	0	Median	1.0392	1.2146	43.56	4	0	Median	1.1202	1.0895	3.542	2	0	Median	1.0527	1.1345	3.3655	2	0	Median	4746300000	2075400000	2670900000	1136200000	419160000	717060000	1348500000	624160000	724370000	1207400000	544550000	662840000	1054100000	487530000	566580000	13080	1395	12393	79960;79961;79962;79963;79964;79965;79966;79967;79968;79969	107990;107991;107992;107993;107994;107995;107996;107997;107998;107999;108000;108001;108002;108003;108004;108005;108006;108007;108008;108009;108010	108002			19	
ENIKPNETSPSFSK	2	Unmodified	1576.7733	0.77330111	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	9.4	5.64		1	1				3				1	2	2	33.059	27.295	3	0.003872	22811	160511_QHF_FH_JSI12i_3	56.527	41.841			0.84387	0.43501	47.805	5	2	Linear	NaN	NaN	NaN	0	0	Median	0.75943	0.88595	NaN	1	0	Median	0.64908	0.63743	79.475	2	1	Median	0.96795	1.0084	25.328	2	1	Median	117730000	73943000	43790000	0	0	0	11198000	4271200	6926900	55134000	39605000	15530000	51400000	30067000	21333000	13081	4302	12394	79970;79971;79972;79973;79974	108011;108012;108013;108014;108015	108015			5	
ENILEEFSK	1	Unmodified	1107.5448	0.54480473	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	68.572	66.773	2	2.1921E-06	59636	160511_QHF_FH_JSI9i_1	127.4	52.185			1.003	1.0385	21.192	10	2	Median	1.3792	1.1878	19.324	3	0	Median	1.0136	1.2186	12.263	2	1	Median	0.98455	0.98848	14.025	2	1	Median	0.82046	0.89059	11.064	3	0	Plateau	1448000000	754600000	693390000	283230000	137070000	146160000	354830000	188220000	166610000	421470000	221530000	199940000	388460000	207780000	180680000	13082	326	12395	79975;79976;79977;79978;79979;79980;79981;79982;79983;79984	108016;108017;108018;108019;108020;108021;108022;108023;108024;108025;108026;108027;108028;108029;108030	108025			15	
ENILFGMGNPLLDISAVVDK	1	Unmodified	2144.1187	0.11874151	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.95	102.84	2	2.766E-21	90643	160511_QHF_FH_JSI11i_2	197.15	176.49			1.0825	1.0701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0825	1.0701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41189000	17213000	23976000	0	0	0	0	0	0	41189000	17213000	23976000	0	0	0	13083	1856	12396	79985	108031	108031			1	
ENILHVSENVIFTDVNSILR	0	Unmodified	2311.2172	0.21721	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.14	86.837	3	1.0274E-18	49408	160513_QHF_FH_JSI9Kac_6	136.02	113.22			0.99273	0.93111	18.016	3	0	Plateau	1.248	1.0457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2486	1.1821	NaN	1	0	Median	0.78968	0.8291	NaN	1	0	Median	537450000	265780000	271670000	201930000	91483000	110450000	0	0	0	132790000	57679000	75113000	202730000	116620000	86111000	13084	878	12397	79986;79987;79988;79989	108032;108033;108034;108035	108033			4	
ENINDEPVDMSAR	0	Unmodified	1488.6515	0.65147142	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			36.925	36.565	2	0.0051721	32708	160511_QHF_FH_JSI10i_1	62.042	52.72			0.97818	1.1701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97818	1.1701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224280000	122690000	101590000	0	0	0	224280000	122690000	101590000	0	0	0	0	0	0	13085	3813	12398	79990	108036	108036			1	
ENIQTLLK	1	Unmodified	957.5495	0.54949617	5183	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	48.554	47.891	2	0.040761	43445	160511_QHF_FH_JSI12i_1	47.869	7.8673			1.7487	1.7349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7487	1.7349	NaN	1	1	Median	13977000	4240500	9736300	0	0	0	0	0	0	0	0	0	13977000	4240500	9736300	13086	5183	12399	79991	108037	108037			1	
ENISEWR	0	Unmodified	932.43519	0.4351947	1920	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	28.097	27.345	2	0.0038686	22890	160511_QHF_FH_JSI11i_2	101.72	45.175			0.99531	0.95431	9.0163	4	1	Median	1.0524	0.90188	NaN	1	0	Median	0.75842	0.90843	NaN	1	1	Median	0.99389	1.0025	NaN	1	0	Median	0.99672	1.0906	NaN	1	0	Median	595960000	307430000	288540000	114330000	59517000	54815000	77860000	42566000	35293000	218160000	103720000	114440000	185610000	101630000	83982000	13087	1920	12400	79992;79993;79994;79995	108038;108039;108040;108041;108042;108043	108043			6	
ENITDAIWGSESNYEAIK	1	Unmodified	2038.9484	0.94836495	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	84.793	84.332	2;3	7.6712E-31	76556	160511_QHF_FH_JSI10i_1	186.68	164.48			1.0093	0.94205	17.219	8	1	Median	1.1233	0.92722	12.196	2	0	Median	0.65484	0.76093	21.59	2	1	Median	0.92197	0.87374	20.722	2	0	Median	1.0093	1.0383	5.1585	2	0	Median	273260000	147090000	126180000	49683000	23478000	26205000	69360000	45075000	24285000	72021000	40172000	31849000	82199000	38360000	43839000	13088	3765	12401	79996;79997;79998;79999;80000;80001;80002;80003	108044;108045;108046;108047;108048;108049;108050;108051;108052;108053;108054;108055;108056;108057;108058	108053			15	
ENITEDEAK	1	Unmodified	1047.472	0.47203371	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	2	2	14.081	11.395	2	9.4971E-07	9470	160511_QHF_FH_JSI9i_1	135.55	95.281			0.98889	1.0096	6.4471	6	0	Median	1.1486	0.92708	NaN	1	0	Median	0.92342	1.0701	NaN	1	0	Median	0.97951	0.97387	0.31478	2	0	Median	0.99543	1.0687	3.2711	2	0	Median	718390000	342270000	376120000	176050000	71007000	105040000	153030000	77845000	75185000	178110000	85721000	92386000	211210000	107690000	103510000	13089	2992	12402	80004;80005;80006;80007;80008;80009	108059;108060;108061;108062;108063;108064;108065;108066	108065			8	
ENITIVDISRK	1	Unmodified	1286.7194	0.71941505	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.14		2	2				1	3		2	3	1	2	52.928	47.266	2;3	0.0022455	25129	160513_QHF_FH_JSI9Kac_5	51.726	34.609			0.91534	0.92161	21.072	8	1	Median	1.0208	0.84603	13.066	2	0	Median	0.91117	1.1301	23.47	3	0	Median	0.91916	0.91169	NaN	1	0	Median	0.90157	0.8882	4.2564	2	1	Median	227970000	120440000	107530000	29237000	16711000	12526000	60196000	30853000	29343000	9022400	4032300	4990000	129510000	68841000	60674000	13090	4617	12403	80010;80011;80012;80013;80014;80015;80016;80017	108067;108068;108069;108070	108067			4	
ENITSDSLLTASMASESTVK	1	Unmodified	2082.9991	0.99907989	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	73.782	73.281	2;3	2.4577E-54	66620	160511_QHF_FH_JSI11i_1	259.98	216.43			0.97411	0.972	10.273	8	1	Median	1.3333	1.0961	10.04	2	1	Median	0.72901	0.88172	8.734	2	0	Median	1.0332	0.99832	3.1759	2	0	Median	0.907	0.93342	5.1243	2	0	Median	518660000	274660000	244000000	105920000	46647000	59276000	133560000	71605000	61951000	119500000	65898000	53601000	159680000	90510000	69171000	13091	2902	12404	80018;80019;80020;80021;80022;80023;80024;80025	108071;108072;108073;108074;108075;108076;108077;108078;108079;108080;108081;108082;108083;108084;108085;108086;108087	108074			17	
ENIVEAIIHSPELIR	0	Unmodified	1731.9519	0.95193418	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	4	2	101.1	101.02	2;3	2.533E-28	88671	160511_QHF_FH_JSI11i_2	156.5	130.14			0.89865	0.90743	13.414	7	1	Median	1.4532	1.2414	NaN	1	1	Median	0.7204	0.87372	NaN	1	0	Median	0.87453	0.87822	12.165	3	0	Plateau	0.87733	0.92441	3.7485	2	0	Median	1242800000	665900000	576870000	154280000	59598000	94682000	242620000	137320000	105300000	504700000	306380000	198320000	341160000	162590000	178570000	13092	686	12405	80026;80027;80028;80029;80030;80031;80032;80033	108088;108089;108090;108091;108092;108093;108094;108095;108096;108097	108093			9	
ENIVGDAMEVLRK	1	Unmodified	1472.7657	0.76571331	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		82.157	82.157	3	0.0028091	73342	160511_QHF_FH_JSI11i_3	54.501	46.776			2.0324	1.9093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0324	1.9093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58289000	16390000	41899000	0	0	0	0	0	0	58289000	16390000	41899000	0	0	0	13093	2884	12406	80034	108098	108098			1	
ENLAILEK	1	Unmodified	928.52295	0.52294707	3293	Q7Z7E8;Q8WVN8	UBE2Q1;UBE2Q2	Ubiquitin-conjugating enzyme E2 Q1;Ubiquitin-conjugating enzyme E2 Q2	yes	no	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	46.863	45.922	2	0.0084917	41828	160511_QHF_FH_JSI12i_1	56.916	32.761			1.2455	1.1383	0.88998	2	0	Median	1.3842	1.1311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1208	1.1454	NaN	1	0	Median	111070000	49296000	61778000	56181000	26479000	29701000	0	0	0	0	0	0	54894000	22816000	32077000	13094	3293	12407	80035;80036	108099;108100	108099			2	
ENLATVEGNFASIDER	0	Unmodified	1763.8326	0.83260691	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	67.943	67.358	2	6.2383E-81	59941	160511_QHF_FH_JSI9i_1	249.32	206.99			0.84573	0.97831	6.3315	4	1	Linear	1.0786	0.91171	NaN	1	0	Median	0.80859	0.94986	NaN	1	0	Median	1.0272	1.0076	NaN	1	1	Median	1.018	1.0523	NaN	1	0	Median	511650000	239440000	272210000	66127000	23902000	42225000	171500000	91432000	80068000	138970000	60986000	77989000	135040000	63119000	71926000	13095	2441	12408	80037;80038;80039;80040;80041	108101;108102;108103;108104;108105	108104			5	
ENLDPSNLMPPPNQTPAPDQPFALSTVR	0	Unmodified	3045.4866	0.48658493	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	95.574	95.197	3	0.00071051	86367	160511_QHF_FH_JSI12i_1	37.344	30.911			1.0425	1.0325	40.562	4	4	Median	1.5589	1.2616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9677	0.946	NaN	1	1	Median	0.75671	0.75668	56.329	2	2	Median	96158000	56222000	39936000	26629000	8032600	18596000	0	0	0	42168000	29617000	12551000	27361000	18573000	8788000	13096	1810	12409	80042;80043;80044;80045	108106;108107;108108;108109;108110	108108			5	
ENLEEEAIIMK	1	Unmodified	1317.6486	0.64861787	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.578	58.933	2	1.1118E-05	52234	160511_QHF_FH_JSI9i_1	109.42	78.345			1.1842	1.1164	10.411	4	3	Median	1.1827	0.96615	NaN	1	1	Median	0.88429	1.0584	NaN	1	0	Median	1.2119	1.1777	NaN	1	1	Median	1.1858	1.2129	NaN	1	1	Median	509000000	266770000	242220000	127220000	61169000	66051000	129170000	80831000	48344000	124360000	64469000	59891000	128240000	60304000	67938000	13097	5180	12410	80046;80047;80048;80049	108111;108112;108113;108114	108114			4	
ENLEKMGPR	1	Acetyl (K)	1114.5441	0.54409322	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		38.434	28.846	2	0.012041	17633	160513_QHF_FH_JSI11Kac_4	60.518	37.09			0.22533	0.22514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22533	0.22514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5193100	4247300	945870	0	0	0	0	0	0	5193100	4247300	945870	0	0	0	13098	5215	12411	80050	108115	108115	3335		1	
ENLESWLNYLK	1	Unmodified	1407.7034	0.70343063	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.85	100.73	2	2.242E-05	88395	160511_QHF_FH_JSI11i_2	101.82	67.285			0.8348	0.82325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8348	0.82325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80977000	52240000	28736000	0	0	0	0	0	0	80977000	52240000	28736000	0	0	0	13099	4481	12412	80051	108116	108116			1	
ENLFMDLLR	0	Unmodified	1149.5852	0.58522975	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.87	100.75	2	4.6054E-06	86656	160511_QHF_FH_JSI12i_2	118.71	89.985			1.0553	1.0644	13.473	4	0	Median	1.2447	1.0332	NaN	1	0	Median	0.89469	1.0964	NaN	1	0	Median	1.2454	1.2457	NaN	1	0	Median	0.81848	0.90044	NaN	1	0	Median	185250000	98211000	87035000	35179000	17970000	17210000	33284000	20784000	12500000	56724000	28952000	27772000	60059000	30506000	29553000	13100	3862	12413	80052;80053;80054;80055	108117;108118;108119;108120;108121;108122;108123	108117			7	
ENLGQGWMTQK	1	Unmodified	1290.6027	0.60267073	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	45.897	44.903	2	4.0265E-06	39446	160511_QHF_FH_JSI10i_2	111.5	84.804			1.3407	1.523	33.903	5	2	Median	2.2941	1.9428	22.456	2	2	Median	1.23	1.523	NaN	1	0	Median	1.3407	1.3568	NaN	1	0	Median	0.81192	0.89505	NaN	1	0	Median	583120000	283830000	299290000	116970000	34928000	82042000	101760000	57794000	43966000	166890000	78196000	88697000	197500000	112910000	84582000	13101	862	12414	80056;80057;80058;80059;80060	108124;108125;108126;108127;108128;108129;108130	108129			7	
ENLISALEEAK	1	Unmodified	1215.6347	0.63468237	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	2	3	73.374	72.686	2	3.0807E-06	62793	160511_QHF_FH_JSI12i_2	110.54	79.977			0.99018	0.99089	31.279	8	3	Median	1.1128	0.91874	14.511	2	0	Median	0.86744	1.0512	12.179	2	1	Median	1.0244	1.0123	7.7954	2	1	Median	0.68729	0.73494	69.868	2	1	Median	1156400000	574640000	581760000	200830000	89166000	111670000	294680000	162590000	132090000	398470000	192990000	205480000	262420000	129900000	132530000	13102	1205	12415	80061;80062;80063;80064;80065;80066;80067;80068;80069;80070	108131;108132;108133;108134;108135;108136;108137;108138;108139;108140;108141	108133			9	
ENLISALEEAKK	2	Unmodified	1343.7296	0.72964538	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	3.98		9	7					2		3	2	6	7	63.988	62.268	2;3	3.4414E-12	55149	160511_QHF_FH_JSI10i_2	133.16	116.81			0.78371	0.82051	54.913	18	9	Median	0.88913	0.74304	29.145	3	0	Median	0.70887	0.86536	19.112	2	0	Median	0.92599	0.91712	28.228	6	3	Median	0.76059	0.84959	85.527	7	6	Median	2897600000	1712600000	1185000000	296450000	177340000	119110000	405580000	262430000	143150000	1113800000	711220000	402590000	1081700000	561620000	520110000	13103	1205	12416	80071;80072;80073;80074;80075;80076;80077;80078;80079;80080;80081;80082;80083;80084;80085;80086;80087;80088	108142;108143;108144;108145;108146;108147;108148;108149;108150;108151;108152;108153;108154;108155;108156;108157;108158;108159;108160;108161;108162;108163;108164;108165;108166;108167;108168;108169;108170;108171	108162			30	
ENLKAAQEEYVK	2	Acetyl (K)	1462.7304	0.73037367	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0.632					1	3	1				3	1	1	51.929	42.39	2	1.2603E-06	22409	160513_QHF_FH_JSI10Kac_3	104.87	85.08			0.85048	1.0127	71.077	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2727	1.4743	26.017	3	0	Median	0.31004	0.3073	NaN	1	0	Median	0.49602	0.54524	NaN	1	0	Median	88903000	57402000	31501000	0	0	0	26329000	11745000	14584000	39507000	30798000	8709400	23067000	14859000	8208000	13104	803	12417	80089;80090;80091;80092;80093	108172;108173;108174;108175;108176;108177;108178;108179	108179	424;430		8	
ENLLDFIK	1	Unmodified	990.5386	0.53859714	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.49	4	8	4				1	4		5	5	5	6	87.374	84.442	1;2	0.00018185	76868	160511_QHF_FH_JSI9i_2	122.13	94.881			1.0107	0.99617	12.722	21	0	Median	1.159	0.95182	6.1723	5	0	Median	0.79787	0.95444	3.5301	5	0	Median	1.0108	1.0017	5.4594	5	0	Median	0.9484	1.0376	19.306	6	0	Plateau	5801900000	2907700000	2894200000	1130600000	518200000	612410000	1539500000	835190000	704310000	1868500000	922610000	945930000	1263200000	631710000	631510000	13105	867	12418	80094;80095;80096;80097;80098;80099;80100;80101;80102;80103;80104;80105;80106;80107;80108;80109;80110;80111;80112;80113;80114	108180;108181;108182;108183;108184;108185;108186;108187;108188;108189;108190;108191;108192;108193;108194;108195;108196;108197;108198;108199;108200;108201;108202;108203;108204;108205;108206;108207;108208;108209;108210;108211;108212;108213;108214;108215;108216;108217;108218;108219;108220;108221;108222;108223;108224;108225;108226;108227;108228;108229;108230;108231;108232	108213			52	
ENLLEEQGSIALRQEQIDNQTR	0	Unmodified	2583.2889	0.2888714	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	64.962	64.672	3	2.172E-08	57555	160511_QHF_FH_JSI11i_3	87.772	71.266			0.83723	0.8614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83723	0.8614	NaN	1	1	Median	23646000	13733000	9912900	0	0	0	0	0	0	0	0	0	23646000	13733000	9912900	13106	2470	12419	80115;80116	108233;108234	108233			2	
ENLPLIVWLLVK	1	Unmodified	1435.8803	0.88027279	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.64		2	5						8	3	4	4	4	102.05	98.021	2;3	1.5157E-20	49982	160513_QHF_FH_JSI12Kac_6	152.07	128.04			0.56393	0.59851	41.659	7	7	Median	0.29326	0.24792	NaN	1	1	Median	0.41727	0.49508	26.829	2	2	Median	0.80132	0.75666	18.336	2	2	Median	0.62697	0.65351	12.546	2	2	Median	1728800000	1081200000	647610000	17047000	12533000	4513700	27205000	20489000	6716400	1292900000	793050000	499900000	391620000	255140000	136480000	13107	445	12420	80117;80118;80119;80120;80121;80122;80123;80124;80125;80126;80127;80128;80129;80130;80131	108235;108236;108237;108238;108239;108240;108241;108242;108243;108244;108245;108246;108247;108248;108249	108247			15	
ENLPQDYAR	0	Unmodified	1104.52	0.51998696	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.476	24.913	2	0.002638	21379	160511_QHF_FH_JSI9i_1	63.816	54.228			0.89124	1.1412	11.017	4	0	Linear	1.4472	1.1982	NaN	1	0	Median	0.81836	0.95385	NaN	1	0	Median	1.1228	1.0869	NaN	1	0	Median	1.146	1.2081	NaN	1	0	Median	591710000	302810000	288900000	119970000	55789000	64182000	169470000	99493000	69979000	161200000	79726000	81474000	141070000	67803000	73269000	13108	2795	12421	80132;80133;80134;80135	108250;108251;108252;108253	108253			4	
ENLPSHFK	1	Unmodified	970.48723	0.48723027	3697	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	20.79	20.217	3	0.017067	16896	160511_QHF_FH_JSI12i_2	28.209	18.995			0.95523	0.99957	42.508	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1803	1.4087	NaN	1	0	Median	1.1209	1.1251	NaN	1	0	Median	0.65204	0.68151	37.439	2	0	Median	399110000	244260000	154850000	0	0	0	64036000	31047000	32989000	83426000	41462000	41964000	251650000	171750000	79896000	13109	3697	12422	80136;80137;80138;80139	108254;108255	108254			2	
ENLQFSAALR	0	Unmodified	1147.5986	0.59857163	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	54.055	52.942	2	0.002291	45325	160511_QHF_FH_JSI12i_2	60.754	44.551			0.87624	0.98053	4.9185	3	0	Median	1.2185	1.0255	NaN	1	0	Median	0.7663	0.9295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87624	0.98053	NaN	1	0	Median	154240000	86294000	67950000	40482000	16826000	23656000	43336000	27948000	15388000	0	0	0	70427000	41520000	28907000	13110	5445	12423	80140;80141;80142	108256;108257;108258	108256			3	
ENLQHTQAEEEAHLLTQQR	0	Unmodified	2274.0989	0.098885782	4677	Q9H2K8	TAOK3	Serine/threonine-protein kinase TAO3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	42.128	41.905	4	0.049974	35791	160511_QHF_FH_JSI12i_3	17.819	12.632			0.99215	1.0514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99215	1.0514	NaN	1	0	Median	48469000	21675000	26794000	0	0	0	0	0	0	0	0	0	48469000	21675000	26794000	13111	4677	12424	80143	108259	108259			1	
ENLQLNQETEAIK	1	Unmodified	1528.7733	0.77330111	3994	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.435	46.211	2	0.0008353	41098	160511_QHF_FH_JSI9i_1	65.842	47.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13112	3994	12425	80144	108260	108260			1	
ENLQPQSSGVQGQVPISPEPLQRPEMLK	1	Unmodified	3085.5866	0.58663332	4710	Q9H467	CUEDC2	CUE domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	72.756	72.053	3	3.8401E-06	63400	160511_QHF_FH_JSI9i_2	56.625	38.681			0.84144	0.93289	14.815	3	2	Median	1.2036	1.0557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83157	0.786	NaN	1	0	Median	0.84144	0.93289	NaN	1	1	Median	44462000	17694000	26768000	12558000	2367500	10191000	0	0	0	23206000	9252000	13954000	8697300	6074600	2622700	13113	4710	12426	80145;80146;80147	108261;108262;108263;108264	108264			4	
ENLSYDLVPLK	1	Unmodified	1289.6867	0.68671794	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	72.594	72.14	2;3	2.6086E-09	64074	160511_QHF_FH_JSI9i_1	128.81	110.37			0.98613	0.99526	27.903	7	1	Median	0.97694	0.7968	NaN	1	0	Median	0.86429	1.0021	15.42	2	0	Median	1.0091	0.97104	3.4835	2	0	Median	1.3107	1.3758	45.105	2	1	Median	1929400000	1001900000	927430000	382000000	182950000	199050000	497490000	294850000	202640000	600500000	307810000	292690000	449370000	216310000	233050000	13114	3852	12427	80148;80149;80150;80151;80152;80153;80154	108265;108266;108267;108268;108269;108270;108271;108272;108273	108273			9	
ENLTDLVVDTDTLGESTQPQR	0	Unmodified	2330.1238	0.12376313	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	85.249	84.748	2	1.5235E-08	77230	160511_QHF_FH_JSI12i_1	116.43	97.107			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13115	2557	12428	80155	108274	108274			1	
ENLTELSGGQR	0	Unmodified	1202.5891	0.58912916	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	2	2	32.391	28.789	2	2.0194E-07	25750	160511_QHF_FH_JSI11i_1	146.11	108.92			1.2364	1.0883	20.182	6	2	Plateau	1.4125	1.1522	NaN	1	0	Median	0.9345	1.1006	NaN	1	0	Median	1.247	1.2291	22.024	2	1	Median	1.2694	1.3466	34.946	2	1	Median	540210000	246750000	293460000	101980000	43974000	58004000	122960000	59135000	63821000	148180000	62557000	85626000	167090000	81081000	86006000	13116	679	12429	80156;80157;80158;80159;80160;80161;80162	108275;108276;108277;108278;108279;108280;108281;108282;108283	108275			9	
ENLVFLAQK	1	Unmodified	1060.5917	0.59169534	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0			By MS/MS	By MS/MS	9.67	6.13	1						2					2	1	64.068	58.36	2	0.0019536	31936	160513_QHF_FH_JSI12Kac_4	69.423	46.683			0.87824	0.86158	103.43	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87824	0.86158	103.43	2	1	Median	NaN	NaN	NaN	0	0	Median	37486000	21601000	15885000	0	0	0	0	0	0	37486000	21601000	15885000	0	0	0	13117	1530;1750	12430	80163;80164;80165	108284;108285;108286	108286			3	
ENMAYTVECLR	0	Unmodified	1384.6115	0.61152086	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.73	50.316	2	0.044689	45572	160511_QHF_FH_JSI11i_1	44.543	34.256			1.2835	1.2543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2835	1.2543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55339000	26641000	28698000	0	0	0	0	0	0	55339000	26641000	28698000	0	0	0	13118	1216	12431	80166	108287	108287			1	
ENMEAISPLK	1	Unmodified	1130.5642	0.56415996	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.531	45.855	2	1.3735E-06	41303	160511_QHF_FH_JSI10i_1	112.36	84.149			0.87307	0.88375	7.5378	4	0	Median	0.9161	0.76519	NaN	1	0	Median	0.73328	0.87188	NaN	1	0	Median	0.90564	0.89585	NaN	1	0	Median	0.84167	0.89577	NaN	1	0	Median	1510300000	848190000	662130000	333160000	174960000	158200000	417290000	258170000	159120000	425730000	241610000	184130000	334140000	173460000	160680000	13119	758	12432	80167;80168;80169;80170	108288;108289;108290;108291;108292;108293;108294	108293			7	
ENMLMKYAQVKPDGTYVK	3	Acetyl (K)	2156.0646	0.064597452	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		77.204	67.886	3	8.1914E-05	37100	160513_QHF_FH_JSI11Kac_6	83.849	60.52			0.39507	0.38554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39507	0.38554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31650000	20743000	10907000	0	0	0	0	0	0	31650000	20743000	10907000	0	0	0	13120	2624	12433	80171	108295	108295	2587;2588;2589		1	
ENMNLSEAQVQALALSR	0	Unmodified	1872.9364	0.93636047	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				75.863	74.97	2	0.0010368	66611	160511_QHF_FH_JSI9i_1	90.707	75.808			1.0399	0.87663	NaN	1	1	Median	1.0399	0.87663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27513000	15226000	12287000	27513000	15226000	12287000	0	0	0	0	0	0	0	0	0	13121	1581	12434	80172	108296	108296			1	
ENMTLQPK	1	Unmodified	959.47462	0.47461667	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	21.145	20.546	2	0.001572	17916	160511_QHF_FH_JSI12i_1	87.696	68.966			1.3807	1.1285	34.525	3	0	Median	1.3807	1.1285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8961	1.8116	NaN	1	0	Median	0.88517	0.92509	NaN	1	0	Median	441820000	187040000	254780000	124610000	50062000	74548000	0	0	0	152970000	57103000	95872000	164240000	79879000	84357000	13122	999;2197	12435	80173;80174;80175	108297;108298;108299	108298			3	
ENMYAVQTLK	1	Unmodified	1195.5907	0.59070906	5727	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.782	41.135	2	1.5415E-07	37382	160511_QHF_FH_JSI12i_1	119.53	97.397			1.0998	1.0168	17.621	4	0	Median	1.0954	0.89929	NaN	1	0	Median	1.1043	1.2659	NaN	1	0	Median	1.1797	1.1498	NaN	1	0	Median	0.88211	0.89274	NaN	1	0	Median	498960000	236350000	262610000	107670000	45551000	62121000	117200000	59980000	57222000	142690000	64962000	77729000	131390000	65856000	65534000	13123	5727	12436	80176;80177;80178;80179	108300;108301;108302;108303;108304;108305;108306	108303			7	
ENNAVYAFLGLTAPPGSK	1	Unmodified	1847.9418	0.94176342	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	0		By matching		By MS/MS	1.33	0.471	2	1									1		2	97.434	97.272	3	0.0060647	88242	160511_QHF_FH_JSI12i_1	53.773	43.115			1.1563	1.2045	18.07	3	1	Median	NaN	NaN	NaN	0	0	Median	0.96703	1.0509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3073	1.3456	15.674	2	1	Median	24657000	13885000	10771000	0	0	0	11258000	7506200	3751500	0	0	0	13399000	6379300	7019700	13124	511	12437	80180;80181;80182	108307;108308	108308			1	
ENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNK	1	Unmodified	4419.0985	0.098498436	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.5	6.06		3							1	1	3			94.021	92.339	4	5.0327E-20	51712	160513_QHF_FH_JSI10Kac_6	115.87	103.1			0.80069	0.99471	21.328	4	1	Median	0.76129	0.65326	NaN	1	0	Median	0.85903	1.0121	0.9995	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	338820000	212880000	125940000	109220000	65007000	44208000	229610000	147870000	81737000	0	0	0	0	0	0	13125	359	12438	80183;80184;80185;80186	108309;108310;108311	108311			3	
ENNIMITLETNIEHNLK	1	Unmodified	2025.0201	0.0200901	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.56	100.44	3	4.1386E-11	86419	160511_QHF_FH_JSI12i_2	139.88	125.57			0.9723	1.1505	13.471	4	1	Linear	0.9736	0.8186	NaN	1	0	Median	0.78327	0.95783	NaN	1	0	Median	1.0897	1.0907	NaN	1	0	Median	0.97099	1.0835	NaN	1	1	Median	224470000	108600000	115880000	22567000	10489000	12078000	38339000	22166000	16174000	73739000	32193000	41547000	89826000	43749000	46077000	13126	4673	12439	80187;80188;80189;80190	108312;108313;108314	108312			3	
ENNISEEVEAPEVEPR	0	Unmodified	1839.8487	0.8486509	4728	Q9H4Z3	PCIF1	Phosphorylated CTD-interacting factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	50.686	49.873	2	5.4908E-11	44980	160511_QHF_FH_JSI10i_1	113.35	61.506			1.6718	1.589	10.406	2	2	Median	2.0961	1.7103	NaN	1	1	Median	1.3335	1.4762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36924000	10354000	26570000	17534000	4625600	12908000	19390000	5728100	13662000	0	0	0	0	0	0	13127	4728	12440	80191;80192;80193;80194;80195;80196;80197	108315;108316;108317;108318;108319;108320;108321	108319			7	
ENNTHPEWSFTTVR	0	Unmodified	1716.7856	0.78559713	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	5	3	48.178	47.594	2;3	5.3403E-05	41047	160511_QHF_FH_JSI11i_2	77.24	71.158			0.98124	0.95165	14.179	11	3	Median	0.9847	0.84269	NaN	1	0	Median	0.74017	0.93013	1.6216	2	1	Median	0.98124	0.95165	18.479	5	2	Median	1.0731	1.0648	4.113	3	0	Median	787370000	406360000	381010000	88434000	49932000	38502000	100590000	59015000	41571000	335280000	170370000	164910000	263070000	127040000	136030000	13128	5206	12441	80198;80199;80200;80201;80202;80203;80204;80205;80206;80207;80208;80209	108322;108323;108324;108325;108326;108327;108328;108329;108330;108331;108332;108333;108334	108328			13	
ENNVDAVHPGYGFLSER	0	Unmodified	1902.886	0.88603946	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	1	5	4	55.545	55.064	2;3	1.9878E-06	48884	160511_QHF_FH_JSI11i_3	98.175	88.418			0.95892	0.92066	18.235	7	2	Median	1.4097	1.2137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97759	0.92066	7.5056	3	1	Median	0.85381	0.85177	20.662	3	1	Median	890570000	440580000	449990000	121670000	56848000	64822000	0	0	0	410770000	197200000	213570000	358130000	186530000	171610000	13129	1002	12442	80210;80211;80212;80213;80214;80215;80216;80217;80218;80219;80220	108335;108336;108337;108338;108339;108340;108341;108342;108343;108344;108345	108335			9	
ENNVVFNR	0	Unmodified	990.48829	0.4882929	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14	0							2					1	1	29.667	21.051	2	0.011946	13380	160513_QHF_FH_JSI11Kac_4	63.565	48.126			1.1953	1.2296	1.3291	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2605	1.2412	NaN	1	0	Median	1.1334	1.2181	NaN	1	0	Median	8640100	4063800	4576300	0	0	0	0	0	0	5372700	2586500	2786200	3267300	1477300	1790000	13130	346	12443	80221;80222	108346;108347;108348	108346			3	
ENPDIVNQSQQAQAR	0	Unmodified	1696.8129	0.81287452	687	O95376	ARIH2	E3 ubiquitin-protein ligase ARIH2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	25.067	24.371	2	1.0937E-06	21029	160511_QHF_FH_JSI9i_1	138.42	105.9			1.0622	1.035	14.419	5	2	Median	1.3506	1.0688	4.5469	2	2	Median	1.0622	1.1963	NaN	1	0	Median	0.87434	0.81773	NaN	1	0	Median	0.92034	0.96998	NaN	1	0	Median	142250000	67975000	74277000	51578000	25379000	26199000	30420000	13930000	16490000	24382000	12894000	11488000	35872000	15772000	20100000	13131	687	12444	80223;80224;80225;80226;80227	108349;108350;108351;108352;108353;108354;108355;108356	108356			8	
ENPDIYK	1	Unmodified	877.41815	0.41814765	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	2	3	21.135	17.808	2	0.010072	15131	160511_QHF_FH_JSI11i_1	66.682	20.256			0.96765	1.0505	5.7878	5	0	Median	1.4222	1.1538	NaN	1	0	Median	0.8728	1.0116	NaN	1	0	Median	1.0953	1.0505	NaN	1	0	Median	0.95828	1.0218	4.0528	2	0	Median	513130000	260880000	252250000	174290000	76244000	98049000	168050000	94210000	73836000	4414100	2070300	2343800	166380000	88354000	78024000	13132	5543	12445	80228;80229;80230;80231;80232;80233;80234	108357;108358;108359;108360;108361;108362;108363	108357			7	
ENPETEEDVGPVVQHIYELR	0	Unmodified	2352.1234	0.1233692	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	77.549	77.113	3	1.3757E-09	68380	160511_QHF_FH_JSI10i_2	112.55	108.84			1.5804	1.5807	15.79	4	2	Median	1.5466	1.3979	NaN	1	0	Median	1.615	1.991	NaN	1	0	Median	1.7903	1.6925	NaN	1	1	Median	1.4221	1.4763	NaN	1	1	Median	194600000	76528000	118070000	47706000	17906000	29800000	46402000	19390000	27012000	60471000	23782000	36689000	40023000	15450000	24572000	13133	859	12446	80235;80236;80237;80238;80239	108364;108365;108366;108367;108368;108369;108370	108367			7	
ENPGFDFSGAEISGNYTK	1	Unmodified	1931.8537	0.85373628	3781	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	69.534	68.986	2;3	2.335E-17	62438	160511_QHF_FH_JSI10i_1	203.04	188.6			1.2137	1.0232	13.156	11	8	Median	1.2137	1.0214	6.5682	3	2	Median	0.85369	0.99492	2.1261	3	3	Median	1.2824	1.2495	13.55	3	3	Plateau	1.2846	1.3135	1.7286	2	0	Median	795890000	383880000	412010000	197230000	89535000	107700000	236970000	131250000	105720000	245750000	112690000	133050000	115940000	50396000	65543000	13134	3781	12447	80240;80241;80242;80243;80244;80245;80246;80247;80248;80249;80250	108371;108372;108373;108374;108375;108376;108377;108378;108379;108380;108381;108382;108383;108384	108378			14	
ENPGLTQDIIMK	1	Unmodified	1357.6912	0.69115139	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.524	57.875	2	3.9224E-05	52624	160511_QHF_FH_JSI12i_1	103.22	96.916			1.0839	0.88252	16.978	4	0	Linear	1.0232	0.83355	NaN	1	0	Median	0.86253	1.0229	NaN	1	0	Median	1.1483	1.1293	NaN	1	0	Median	1.1816	1.2386	NaN	1	0	Median	1995000000	974140000	1020900000	671680000	308920000	362760000	564000000	311070000	252930000	455250000	208630000	246620000	304090000	145510000	158570000	13135	4445	12448	80251;80252;80253;80254	108385;108386;108387;108388;108389;108390;108391	108388			7	
ENPGSGEYDFR	0	Unmodified	1269.5262	0.52619455	4485	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.713	29.118	2	0.00045373	26073	160511_QHF_FH_JSI12i_1	70.908	65.92			1.0351	1.0106	12.661	4	0	Median	1.3539	1.1022	NaN	1	0	Median	0.77335	0.91438	NaN	1	0	Median	1.2127	1.1789	NaN	1	0	Median	0.88345	0.92657	NaN	1	0	Median	166000000	84013000	81988000	34930000	15930000	18999000	45857000	27114000	18743000	42960000	19958000	23002000	42255000	21011000	21244000	13136	4485	12449	80255;80256;80257;80258	108392;108393	108393			2	
ENPGSWFSEFK	1	Unmodified	1326.5881	0.58806652	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.719	74.864	2	0.00050115	66045	160511_QHF_FH_JSI9i_2	85.958	63.872			1.1908	1.2142	17.672	4	4	Median	1.1463	0.96481	NaN	1	1	Median	0.97161	1.1868	NaN	1	1	Median	1.237	1.2422	NaN	1	1	Median	1.3059	1.4831	NaN	1	1	Median	202550000	90759000	111790000	40450000	22363000	18086000	44914000	24302000	20612000	68570000	20762000	47808000	48613000	23332000	25282000	13137	1183	12450	80259;80260;80261;80262	108394;108395;108396;108397	108395			4	
ENPHATSNSIFINWK	1	Unmodified	1756.8533	0.85328277	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.7	6.13			2						4	2		2	2	64.932	58.736	3	2.1731E-05	50399	160511_QHF_FH_JSI12i_3	108.06	89.65			1.3664	1.2874	17.435	6	2	Median	1.4792	1.2359	6.1768	2	1	Median	NaN	NaN	NaN	0	0	Median	1.6053	1.4977	21.384	2	0	Median	1.0867	1.1469	16.331	2	1	Median	219720000	99031000	120680000	27915000	13373000	14542000	0	0	0	87948000	37801000	50146000	103850000	47857000	55997000	13138	5106	12451	80263;80264;80265;80266;80267;80268	108398;108399;108400;108401	108400			4	
ENPLLPEEEEQR	0	Unmodified	1481.6998	0.69980182	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.217	40.844	2	3.4878E-14	36903	160511_QHF_FH_JSI11i_1	132.32	88.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13139	2084	12452	80269;80270	108402;108403	108402			2	
ENPLQFK	1	Unmodified	874.45487	0.45486751	1426;1073	P15311;P35241	EZR;RDX	Ezrin;Radixin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.66	4	4	2				3	1		3	4	3	4	41.297	37.693	2	0.0048398	34275	160511_QHF_FH_JSI12i_1	97.071	36.11			0.96326	1.081	13.857	14	0	Median	1.3576	1.1237	20.971	3	0	Plateau	0.87552	1.0457	13.205	4	0	Median	1.144	1.122	15.431	3	0	Plateau	0.92545	1.1849	13.191	4	0	Linear	6784400000	3296700000	3487700000	1499300000	636690000	862590000	1748900000	920760000	828190000	2160400000	1020900000	1139500000	1375800000	718310000	657450000	13140	1073;1426	12453	80271;80272;80273;80274;80275;80276;80277;80278;80279;80280;80281;80282;80283;80284	108404;108405;108406;108407;108408;108409;108410;108411;108412;108413;108414;108415;108416;108417;108418;108419;108420;108421;108422;108423;108424;108425;108426;108427;108428;108429;108430;108431;108432;108433;108434	108412			31	
ENPLQFKFR	1	Acetyl (K)	1219.635	0.63495714	1426;1073	P15311;P35241	EZR;RDX	Ezrin;Radixin	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	77.117	66.586	2	0.0019792	35483	160513_QHF_FH_JSI11Kac_5	86.136	78.204			0.69433	0.75853	44.488	4	0	Median	NaN	NaN	NaN	0	0	Median	0.8736	1.0459	NaN	1	0	Median	0.37631	0.37134	NaN	1	0	Median	0.69433	0.75853	13.779	2	0	Median	86727000	56285000	30442000	0	0	0	23272000	11431000	11841000	49760000	36406000	13353000	13696000	8447200	5248400	13141	1073;1426	12454	80285;80286;80287;80288	108435;108436;108437	108436	912		3	
ENPNQYNYIA	0	Unmodified	1224.5411	0.54111633	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		51.236	41.884	2	0.047831	16850	160513_QHF_FH_JSI11Kac_1	38.293	31.073			0.7929	0.81407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7929	0.81407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	914480	417980	496500	0	0	0	0	0	0	914480	417980	496500	0	0	0	13142	2457	12455	80289	108438	108438			1	
ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR	0	Unmodified	3953.9806	0.98063191	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				78.679	77.955	4	0.045922	68780	160511_QHF_FH_JSI9i_2	13.435	4.8888			0.9854	0.86259	NaN	1	1	Median	0.9854	0.86259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13403000	8751300	4652100	13403000	8751300	4652100	0	0	0	0	0	0	0	0	0	13143	647	12456	80290	108439	108439			1	
ENPRNFSDNQLQEGK	1	Unmodified	1774.8234	0.8234392	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				26.079	25.051	3	8.9955E-05	21509	160511_QHF_FH_JSI9i_2	76.82	59.601			1.4603	1.2346	NaN	1	0	Median	1.4603	1.2346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40782000	15517000	25265000	40782000	15517000	25265000	0	0	0	0	0	0	0	0	0	13144	1470	12457	80291	108440	108440			1	
ENPSATLEDLEKPGVDEEPQHVLLR	1	Unmodified	2814.4036	0.4035668	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	73.756	73.393	3;4	3.2134E-11	65443	160511_QHF_FH_JSI11i_3	91.079	83.719			1.0012	0.96265	71.974	5	4	Median	NaN	NaN	NaN	0	0	Median	0.54602	0.6687	85.427	2	2	Median	0.53653	0.50579	91.013	2	1	Median	1.2579	1.2168	NaN	1	1	Median	467550000	230500000	237050000	0	0	0	123370000	54295000	69075000	299900000	159490000	140410000	44282000	16713000	27569000	13145	3904	12458	80292;80293;80294;80295;80296	108441;108442;108443;108444;108445;108446	108441			6	
ENPSSQYWK	1	Unmodified	1137.5091	0.50908792	536	O75496	GMNN	Geminin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.313	27.122	2	0.01057	24017	160511_QHF_FH_JSI11i_1	59.153	27.282			1.2828	1.2439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2828	1.2439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18394000	10443000	7951400	0	0	0	0	0	0	18394000	10443000	7951400	0	0	0	13146	536	12459	80297	108447	108447			1	
ENPVLDVVSNPEQTAGEERGDGNSGFNEHLK	1	Unmodified	3337.5447	0.54470475	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		66.638	66.224	4	1.2786E-17	58934	160511_QHF_FH_JSI11i_3	97.469	91.689			0.96866	0.93003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96866	0.93003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71579000	26661000	44918000	0	0	0	16795000	0	16795000	54784000	26661000	28123000	0	0	0	13147	2320	12460	80298;80299	108448;108449;108450	108448			3	
ENPVVVAEKIQR	1	Acetyl (K)	1422.7831	0.78307794	601	O76080	ZFAND5	AN1-type zinc finger protein 5	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	68.641	57.945	2	0.023876	31647	160513_QHF_FH_JSI12Kac_4	69.979	59.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13148	601	12461	80300	108451	108451	311		1	
ENPVVVGEK	1	Unmodified	969.51311	0.51311067	3043	Q6FIF0	ZFAND6	AN1-type zinc finger protein 6	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.687	20.504	2	0.0079697	17381	160511_QHF_FH_JSI9i_1	61.65	36.727			1.5197	1.2663	NaN	1	1	Median	1.5197	1.2663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77703000	32296000	45407000	77703000	32296000	45407000	0	0	0	0	0	0	0	0	0	13149	3043	12462	80301	108452	108452			1	
ENPVYEK	1	Unmodified	877.41815	0.41814765	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	5.92	4	3				3	2			2	3	4	3	14.761	11.797	2	0.0076576	7707	160513_QHF_FH_JSI11Kac_3	88.942	18.675			0.95668	1.0473	53.28	11	1	Median	1.6067	1.381	22.393	2	0	Median	1.0393	1.2479	13.754	3	0	Plateau	0.85804	0.84081	76.532	4	1	Median	0.91875	0.98988	7.9716	2	0	Median	10561000000	5472800000	5087700000	2437300000	1147900000	1289400000	2929000000	1603600000	1325400000	2546900000	1278400000	1268500000	2647400000	1443000000	1204400000	13150	1590	12463	80302;80303;80304;80305;80306;80307;80308;80309;80310;80311;80312;80313	108453;108454;108455;108456;108457;108458;108459;108460;108461;108462;108463;108464;108465;108466;108467;108468;108469	108457			17	
ENPYGEDDNK	1	Unmodified	1179.468	0.46801097	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.067	9.6018	2	0.00064101	7122	160511_QHF_FH_JSI9i_1	85.731	55.921			0.39664	0.44453	56.648	3	3	Median	1.3922	1.1346	NaN	1	1	Median	0.37865	0.44453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39664	0.40914	NaN	1	1	Median	74120000	40035000	34085000	21364000	6590300	14773000	28720000	18692000	10028000	0	0	0	24036000	14753000	9283200	13151	4250	12464	80314;80315;80316;80317	108470;108471;108472;108473	108473			4	
ENPYYDSR	0	Unmodified	1042.4356	0.43558863	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.847	14.393	2	0.0065931	11881	160511_QHF_FH_JSI11i_1	62.104	44.256			0.85945	0.90864	10.536	4	0	Median	1.1197	0.93093	NaN	1	0	Median	0.75734	0.88689	NaN	1	0	Median	0.97532	0.93947	NaN	1	0	Median	0.71519	0.74883	NaN	1	0	Median	1747000000	896270000	850710000	327720000	140760000	186950000	390100000	215940000	174150000	571190000	308130000	263060000	457980000	231440000	226540000	13152	2155	12465	80318;80319;80320;80321	108474;108475;108476;108477;108478;108479	108474			6	
ENQEGAANVNVR	0	Unmodified	1299.6167	0.61674089	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.8	13.832	2	0.0028525	11141	160511_QHF_FH_JSI9i_1	58.676	32.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13153	3494	12466	80322	108480	108480			1	
ENQELNAHNQELNNR	0	Unmodified	1821.8354	0.83540087	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	16.337	15.422	3	0.0016433	12457	160511_QHF_FH_JSI12i_2	40.237	28.214			0.8192	0.92635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8192	0.92635	NaN	1	1	Median	10913000	7234200	3678600	0	0	0	0	0	0	0	0	0	10913000	7234200	3678600	13154	3165	12467	80323;80324	108481;108482	108482			2	
ENQGDETQGQQPPQR	0	Unmodified	1710.7558	0.75575357	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	1	2	3	9.5373	6.2202	2;3	2.7053E-289	5875	160511_QHF_FH_JSI11i_1	369.07	346.38			0.83792	0.84476	8.0498	7	0	Median	1.0997	0.91676	NaN	1	0	Median	0.80473	0.94444	NaN	1	0	Median	0.84114	0.82391	2.4373	2	0	Median	0.77221	0.84476	10.625	3	0	Median	976980000	517930000	459050000	211910000	97184000	114730000	302960000	173790000	129160000	212720000	119210000	93513000	249390000	127740000	121640000	13155	2066	12468	80325;80326;80327;80328;80329;80330;80331	108483;108484;108485;108486;108487;108488;108489;108490	108483			8	
ENQGDETQGQQPPQRR	0	Unmodified	1866.8569	0.8568646	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.609	8	7	1							4	5	5	2	6.7493	6.4124	2;3	9.3146E-07	4589	160511_QHF_FH_JSI10i_2	101.39	64.94			0.99979	1.0009	9.1784	15	0	Median	1.3232	1.133	4.3018	4	0	Median	0.83432	1.1714	9.9099	4	0	Linear	0.99979	0.95966	3.4835	5	0	Median	0.94099	1.0226	11.071	2	0	Median	3391400000	1680200000	1711200000	958170000	423270000	534900000	1120600000	596270000	524330000	923670000	452040000	471630000	388960000	208610000	180350000	13156	2066	12469	80332;80333;80334;80335;80336;80337;80338;80339;80340;80341;80342;80343;80344;80345;80346;80347	108491;108492;108493;108494;108495;108496;108497;108498;108499;108500;108501;108502;108503;108504;108505;108506;108507;108508;108509;108510;108511;108512;108513;108514;108515;108516	108516			26	
ENQIPEEAGSSGLGK	1	Unmodified	1514.7213	0.72126554	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.501	32.897	2	6.3444E-10	29268	160511_QHF_FH_JSI10i_1	149.41	141.58			0.76269	0.7386	6.3382	4	1	Linear	0.97555	0.79854	NaN	1	0	Median	0.62948	0.74782	NaN	1	0	Median	0.7326	0.72436	NaN	1	0	Median	0.79402	0.83361	NaN	1	1	Median	635980000	361290000	274690000	138000000	81064000	56931000	178130000	105660000	72471000	197840000	108970000	88865000	122020000	65598000	56421000	13157	2595	12470	80348;80349;80350;80351	108517;108518;108519;108520;108521;108522;108523	108520			7	
ENQKHIYYITGETK	2	Acetyl (K)	1764.8683	0.86826413	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.576							4	8	1	1	4	4	4	51.199	40.766	2;3	1.3144E-07	22640	160513_QHF_FH_JSI11Kac_5	111.92	101.07			0.56773	0.62185	95.294	11	1	Median	0.97218	0.82484	NaN	1	0	Median	1.1013	1.3177	7.1731	3	0	Median	0.31065	0.30509	105.67	3	1	Plateau	0.55057	0.59184	10.625	4	0	Median	209550000	144630000	64925000	8407200	3881700	4525500	40049000	19230000	20818000	126430000	99753000	26682000	34660000	21760000	12900000	13158	880	12471	80352;80353;80354;80355;80356;80357;80358;80359;80360;80361;80362;80363;80364	108524;108525;108526;108527;108528;108529;108530;108531;108532;108533;108534;108535;108536;108537;108538;108539	108532	604;605		16	
ENQLQLSCFINQEVK	1	Unmodified	1848.904	0.90399771	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	5										1	2	2	80.462	80.084	2;3	5.4993E-05	73004	160511_QHF_FH_JSI12i_1	77.222	67.434			0.68727	1.3426	59.006	5	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68727	0.76191	NaN	1	0	Median	0.48474	0.46353	66.92	2	2	Median	0.71244	0.75859	80.744	2	1	Median	185120000	115780000	69334000	0	0	0	19244000	12617000	6626500	79860000	54503000	25358000	86012000	48663000	37349000	13159	1824	12472	80365;80366;80367;80368;80369	108540;108541;108542;108543	108542			4	
ENQPENSQTPTK	1	Unmodified	1371.6266	0.62663688	2312	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	7.4732	7.1359	2	3.3545E-14	5048	160511_QHF_FH_JSI10i_1	132.78	96.835			1.6046	1.6907	21.169	4	3	Median	2.1592	1.7623	NaN	1	1	Median	1.5122	1.7467	NaN	1	1	Median	1.7026	1.6365	NaN	1	1	Median	1.1239	1.1284	NaN	1	0	Median	96268000	31386000	64882000	21690000	7459600	14231000	27210000	8218000	18992000	20121000	6383100	13738000	27246000	9324800	17922000	13160	2312	12473	80370;80371;80372;80373;80374	108544;108545;108546;108547;108548	108547			5	
ENQQATSGPNQPSVR	0	Unmodified	1611.7601	0.76011066	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	5					5				2	2	3	3	15.504	11.291	2;3	2.6906E-117	9836	160511_QHF_FH_JSI11i_1	279.56	252.44			0.94014	1.0329	8.1495	9	0	Median	1.3721	1.1168	NaN	1	0	Median	0.83953	0.98931	10.976	2	0	Median	1.0769	1.0586	8.0067	3	0	Median	0.93079	1.0053	3.8677	3	0	Median	1062100000	525100000	537030000	285170000	113620000	171540000	253970000	143930000	110040000	254400000	126450000	127950000	268600000	141110000	127490000	13161	1106	12474	80375;80376;80377;80378;80379;80380;80381;80382;80383;80384	108549;108550;108551;108552;108553;108554;108555;108556;108557;108558;108559;108560;108561;108562;108563;108564;108565;108566	108550			18	
ENQSASSKQK	2	Acetyl (K)	1147.5469	0.54692999	2236	Q05BQ5	MBTD1	MBT domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					2	1	1	5.0357	-2.2034	2	5.1355E-08	1374	160513_QHF_FH_JSI10Kac_2	133.81	109.85			0.89371	0.99201	6.0847	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81765	0.96667	1.3323	2	0	Median	1.1266	1.0987	NaN	1	0	Median	0.97124	1.0085	NaN	1	0	Median	38258000	19988000	18270000	0	0	0	17493000	9501100	7991900	5634600	2517900	3116700	15130000	7968800	7161100	13162	2236	12475	80385;80386;80387;80388	108567;108568;108569;108570;108571;108572	108570	2341		6	
ENQVLSVR	0	Unmodified	943.50869	0.50869399	2298	Q10589	BST2	Bone marrow stromal antigen 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	5.88		3					2			2	1	1	1	22.8	21.818	2	0.0059021	18567	160511_QHF_FH_JSI9i_2	78.334	43.527			1.6064	1.3729	NaN	1	1	Median	1.6064	1.3729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76754000	30977000	45777000	76754000	30977000	45777000	0	0	0	0	0	0	0	0	0	13163	2298	12476	80389;80390;80391;80392;80393	108573;108574;108575;108576;108577	108574			5	
ENQWCEEK	1	Unmodified	1121.4448	0.44477311	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	14.099	13.764	2	0.0051166	11524	160511_QHF_FH_JSI12i_1	66.621	50.959			0.99325	1.0843	1.6684	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94197	1.0972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0473	1.0716	NaN	1	0	Median	108840000	49324000	59519000	0	0	0	40234000	20202000	20032000	0	0	0	68609000	29123000	39487000	13164	2057	12477	80394;80395	108578;108579	108578			2	
ENQWFDVGVIK	1	Unmodified	1333.6667	0.6666512	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		78.653	78.022	2	0.0039526	68511	160511_QHF_FH_JSI11i_2	66.595	55.766			1.5021	1.4874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5021	1.4874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65788000	28105000	37683000	0	0	0	0	0	0	65788000	28105000	37683000	0	0	0	13165	1743	12478	80396;80397	108580;108581	108580			2	
ENRDQSAQCTASK	1	Unmodified	1493.6529	0.6528684	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	4.7258	4.3841	3	0.014858	2335	160511_QHF_FH_JSI12i_1	39.587	33.927			1.2018	1.2407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2018	1.2407	NaN	1	0	Median	74034000	25892000	48142000	0	0	0	0	0	0	0	0	0	74034000	25892000	48142000	13166	3290	12479	80398	108582	108582			1	
ENREAQMAAK	1	Unmodified	1146.5452	0.54515585	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							1	1		2	5.9745	5.8112	2;3	0.0033637	3546	160511_QHF_FH_JSI12i_3	72.928	46.326			0.92501	0.4977	50.901	4	0	Linear	1.1476	1.0199	NaN	1	0	Median	1.8499	2.2603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74546	0.77021	0.26502	2	0	Median	264510000	135860000	128650000	46363000	23541000	22822000	32442000	10450000	21992000	0	0	0	185710000	101870000	83838000	13167	1105	12480	80399;80400;80401;80402	108583;108584;108585;108586	108586			4	
ENREQYQVVIQAK	1	Unmodified	1603.8318	0.83181904	5745	Q9Y6N8;Q9ULB4;P55285	CDH10;CDH9;CDH6	Cadherin-10;Cadherin-9;Cadherin-6	yes	no	0	0	0	1				By MS/MS	3	0			1										1	32.066	31.988	3	0.017254	26991	160511_QHF_FH_JSI12i_3	38.189	29.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13168	5745	12481	80403	108587	108587			1	
ENRYWIFR	0	Unmodified	1182.5934	0.59342667	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.587	54.267	3	0.017668	29864	160513_QHF_FH_JSI10Kac_6	55.531	42.153			1.3256	1.5785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3256	1.5785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10113000	5039900	5073300	0	0	0	10113000	5039900	5073300	0	0	0	0	0	0	13169	939	12482	80404	108588	108588			1	
ENSDVIALWK	1	Unmodified	1173.603	0.60298831	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.035	66.442	2	0.00017476	60321	160511_QHF_FH_JSI11i_1	94.309	71.238			0.80643	0.8019	11.05	4	1	Median	1.0684	0.88166	NaN	1	0	Median	0.57928	0.67765	NaN	1	0	Median	0.82376	0.78759	NaN	1	1	Median	0.78946	0.81648	NaN	1	0	Median	195760000	112910000	82853000	43908000	23652000	20256000	51917000	31235000	20682000	47379000	24445000	22934000	52559000	33578000	18981000	13170	1360	12483	80405;80406;80407;80408	108589;108590;108591;108592;108593	108589			5	
ENSEQPQFPGKSK	2	Acetyl (K)	1516.7158	0.71578623	5396	Q9ULD4	BRPF3	Bromodomain and PHD finger-containing protein 3	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					3						1		2	41.387	32.606	2	0.024374	14791	160513_QHF_FH_JSI10Kac_2	56.783	41.211			0.57376	0.63173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57376	0.63173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1634700	508070	1126600	0	0	0	791280	508070	283220	0	0	0	843400	0	843400	13171	5396	12484	80409;80410;80411	108594;108595;108596	108594	3387;3388		3	
ENSETVVTGSLDDLVK	1	Unmodified	1704.8418	0.84177461	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	74.237	73.695	2;3	2.1562E-52	67154	160511_QHF_FH_JSI12i_1	265.13	234.24			0.9461	0.9182	11.027	9	2	Median	1.0198	0.84336	11.043	3	2	Plateau	0.75562	0.89592	3.6984	2	0	Median	0.86606	0.84756	19.987	2	0	Median	0.916	0.96838	11.026	2	0	Median	1300900000	659960000	640960000	350330000	181200000	169130000	285140000	157080000	128060000	287510000	151390000	136120000	377930000	170290000	207650000	13172	4605	12485	80412;80413;80414;80415;80416;80417;80418;80419;80420	108597;108598;108599;108600;108601;108602;108603;108604;108605;108606;108607;108608;108609;108610;108611;108612;108613	108605			17	
ENSFGSPLEFR	0	Unmodified	1281.599	0.59896556	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	61.09	60.164	2	0.00023086	51682	160511_QHF_FH_JSI12i_2	85.958	71.497			1.1053	1.1453	9.339	3	1	Median	1.1588	0.99177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1053	1.1453	NaN	1	0	Median	1.0844	1.1815	NaN	1	1	Median	101010000	49601000	51412000	29923000	15551000	14372000	0	0	0	39987000	20121000	19866000	31103000	13929000	17174000	13173	5474	12486	80421;80422;80423;80424	108614;108615;108616;108617	108615			4	
ENSGAIEASVK	1	Unmodified	1103.5459	0.54586736	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.804	18.684	2	0.012718	15943	160511_QHF_FH_JSI11i_1	45.603	29.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13174	3033	12487	80425	108618	108618			1	
ENSIEILSSTIK	1	Unmodified	1332.7137	0.71366097	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	77.075	66.513	2	0.0091198	35539	160513_QHF_FH_JSI12Kac_4	57.019	38.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13175	5075	12488	80426	108619	108619			1	
ENSIEILSSTIKPYNAEDNENFK	2	Unmodified	2654.2712	0.27115565	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		79.741	79.115	3	0.00030923	69526	160511_QHF_FH_JSI11i_2	46.982	33.662			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13176	5075	12489	80427	108620	108620			1	
ENSLENEK	1	Unmodified	961.43525	0.43525428	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.817	7.4697	2	0.00022981	5364	160511_QHF_FH_JSI12i_1	118.06	71.633			1.2016	1.1594	7.357	4	0	Median	1.4081	1.1552	NaN	1	0	Median	0.91643	1.0721	NaN	1	0	Median	1.2065	1.1636	NaN	1	0	Median	1.1967	1.2827	NaN	1	0	Median	416030000	208510000	207520000	92690000	42265000	50424000	107000000	59826000	47178000	108880000	45745000	63135000	107450000	60671000	46783000	13177	3918	12490	80428;80429;80430;80431	108621;108622;108623;108624	108623			4	
ENSLLYSEIPK	1	Unmodified	1291.666	0.66598249	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.779	59.351	2	0.00050046	53847	160511_QHF_FH_JSI11i_1	78.342	66.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13178	3308	12491	80432	108625	108625			1	
ENSPAPPAPMQSISSGIR	0	Unmodified	1837.8992	0.89924668	3177	Q6ZMB5	TMEM184A	Transmembrane protein 184A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				59.402	58.281	2	0.00075738	51762	160511_QHF_FH_JSI9i_1	59.898	36.047			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13179	3177	12492	80433	108626	108626			1	
ENSSPSVTSANLDHTK	1	Unmodified	1685.7857	0.78565671	581	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.303	21.119	3	3.5708E-05	17865	160511_QHF_FH_JSI9i_1	62.94	55.16			1.2312	1.0372	NaN	1	0	Median	1.2312	1.0372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36574000	20765000	15810000	36574000	20765000	15810000	0	0	0	0	0	0	0	0	0	13180	581	12493	80434	108627;108628	108627			2	
ENSSQIAQDHQK	1	Unmodified	1383.6379	0.63787026	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.17	4.84	5						1			2		2	2	6.5917	4.7896	2;3	6.8107E-08	3956	160511_QHF_FH_JSI12i_1	138.45	99.144			1.0368	1.0499	50.532	5	1	Median	2.161	1.7559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.428	1.403	41.002	2	0	Median	0.67351	0.69611	31.268	2	0	Median	247150000	136990000	110160000	21029000	6617100	14412000	0	0	0	51097000	22719000	28378000	175020000	107650000	67373000	13181	5330	12494	80435;80436;80437;80438;80439;80440	108629;108630;108631;108632;108633;108634	108629			6	
ENSSSQDPQTEGTR	0	Unmodified	1534.6496	0.64955716	1068	P15151	PVR	Poliovirus receptor	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	1	0	3									1	1		1	6.0157	5.6188	2	0.00010464	3696	160511_QHF_FH_JSI12i_1	108.17	94.4			1.0045	1.0553	42.472	3	0	Median	2.0312	1.6549	NaN	1	0	Median	0.59227	0.70807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0045	1.0553	NaN	1	0	Median	151970000	82357000	69615000	34807000	17157000	17650000	54635000	36905000	17729000	0	0	0	62530000	28295000	34235000	13182	1068	12495	80441;80442;80443	108635	108635			1	
ENSTHFSQPNSTK	1	Unmodified	1475.6641	0.66408501	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							2	2	3	3	10.305	9.8511	2;3	0.00015541	7342	160511_QHF_FH_JSI11i_2	83.617	72.466			1.0158	1.0539	28.932	9	2	Median	1.5628	1.3493	35.286	2	1	Median	0.93989	1.1731	15.144	2	1	Median	1.1188	1.1006	43.72	3	0	Median	0.86179	0.94532	9.9803	2	0	Median	340170000	164640000	175530000	57701000	21994000	35706000	68317000	34190000	34126000	132340000	63020000	69317000	81818000	45438000	36380000	13183	2248	12496	80444;80445;80446;80447;80448;80449;80450;80451;80452;80453	108636;108637;108638;108639;108640;108641;108642;108643	108640			5	
ENTDSVVMQPK	1	Unmodified	1246.5864	0.58635197	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.833	23.684	2	0.00020203	20653	160511_QHF_FH_JSI11i_1	91.701	78.247			2.6996	2.52	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6996	2.52	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50445000	11568000	38877000	0	0	0	0	0	0	50445000	11568000	38877000	0	0	0	13184	2213	12497	80454	108644	108644			1	
ENTEGEYSGIEHVIVDGVVQSIK	1	Unmodified	2501.2286	0.22856255	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.83	100.71	3	3.1299E-48	88355	160511_QHF_FH_JSI11i_2	206.94	192.63			0.92051	0.96976	9.3515	4	0	Median	1.1909	1.0107	NaN	1	0	Median	0.69202	0.8553	NaN	1	0	Median	0.91294	0.93052	NaN	1	0	Median	0.92814	1.0571	NaN	1	0	Median	963320000	525700000	437620000	165380000	82055000	83326000	183030000	112250000	70784000	320050000	166520000	153530000	294860000	164880000	129980000	13185	1698	12498	80455;80456;80457;80458	108645;108646;108647;108648;108649;108650;108651;108652	108649			8	
ENTEGEYSSLEHESVAGVVESLK	1	Unmodified	2492.1555	0.15545719	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	79.669	79.064	3	2.0782E-30	69588	160511_QHF_FH_JSI9i_2	175.12	158.41			1.0241	1.0457	52.373	7	4	Median	0.96585	0.80708	NaN	1	0	Median	0.75669	0.91788	8.7678	2	0	Median	1.3686	1.3379	34.848	2	2	Median	2.1352	2.2939	63.289	2	2	Median	763710000	366270000	397440000	62700000	29595000	33105000	144040000	101490000	42545000	259410000	126890000	132510000	297570000	108290000	189280000	13186	1738	12499	80459;80460;80461;80462;80463;80464;80465;80466;80467	108653;108654;108655;108656;108657;108658;108659;108660;108661;108662	108659			10	
ENTFECQNPR	0	Unmodified	1293.5408	0.54079876	2783	Q17RY6	LY6K	Lymphocyte antigen 6K	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.812	14.685	2	0.001482	12171	160511_QHF_FH_JSI11i_1	70.028	54.877			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13187	2783	12500	80468	108663	108663			1	
ENTFTIENESVK	1	Unmodified	1409.6674	0.66743906	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	44.197	41.806	2	1.2546E-07	37516	160511_QHF_FH_JSI10i_1	135.99	113.25			0.77597	0.86613	36.839	5	0	Median	1.15	0.94585	NaN	1	0	Median	1.0592	1.2515	52.047	2	0	Median	0.72249	0.70858	NaN	1	0	Median	0.77597	0.78804	NaN	1	0	Median	460730000	253630000	207110000	110930000	49501000	61432000	132520000	89291000	43233000	103950000	50934000	53014000	113330000	63900000	49429000	13188	3050	12501	80469;80470;80471;80472;80473;80474	108664;108665;108666;108667;108668;108669;108670	108666			7	
ENTHQTLK	1	Unmodified	969.48796	0.48795855	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.14		4					3	3		2	2	2	4	5.1654	-0.91795	2;3	0.00063032	2404	160511_QHF_FH_JSI12i_2	101.9	70.667			0.98996	0.99953	14.062	9	0	Median	1.3332	1.1096	14.775	2	0	Median	0.88705	1.0574	16.448	2	0	Median	1.054	1.0349	9.5865	2	0	Median	0.75682	0.81336	17.409	3	0	Plateau	581180000	269070000	312120000	124120000	55219000	68905000	200050000	100290000	99764000	13097000	6673400	6423700	243910000	106880000	137030000	13189	5098	12502	80475;80476;80477;80478;80479;80480;80481;80482;80483;80484	108671;108672;108673;108674;108675;108676;108677	108671			7	
ENTLNQLVGAAFGAAGQR	0	Unmodified	1815.9228	0.92275932	2187	Q02252	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		94.223	93.869	3	0.00011755	83231	160511_QHF_FH_JSI10i_2	69.935	58.673			1.0352	1.109	11.124	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87164	1.0251	NaN	1	1	Median	1.2296	1.1997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26734000	11460000	15274000	0	0	0	16495000	7696600	8798100	10239000	3763100	6475800	0	0	0	13190	2187	12503	80485;80486	108678;108679	108679			2	
ENTPPALSGTR	0	Unmodified	1141.5728	0.57275081	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.229	20.046	2	0.029496	16985	160511_QHF_FH_JSI9i_1	47.559	23.404			1.2235	1.0038	NaN	1	1	Median	1.2235	1.0038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107200000	40950000	66255000	107200000	40950000	66255000	0	0	0	0	0	0	0	0	0	13191	1373	12504	80487	108680	108680			1	
ENTPSEANLQEEEVR	0	Unmodified	1743.7911	0.79113602	3928	Q93062	RBPMS	RNA-binding protein with multiple splicing	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.628	33.337	2	1.8851E-15	29813	160511_QHF_FH_JSI10i_1	167.89	130.19			0.88278	0.9505	7.0807	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84637	0.9993	NaN	1	0	Median	0.92076	0.90408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90300000	39332000	50968000	0	0	0	46051000	22761000	23291000	44248000	16571000	27677000	0	0	0	13192	3928	12505	80488;80489	108681;108682;108683	108683			3	
ENTQPFVVLPK	1	Unmodified	1270.6921	0.69213767	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.975	60.334	2	0.00040026	54452	160511_QHF_FH_JSI10i_1	87.895	75.105			0.59032	0.53745	79.407	4	2	Median	0.58295	0.4776	NaN	1	0	Median	0.42833	0.49351	NaN	1	1	Median	0.59777	0.58531	NaN	1	1	Median	2.4595	2.5039	NaN	1	0	Median	327340000	202710000	124630000	90363000	57537000	32826000	85799000	62340000	23458000	95521000	62990000	32531000	55654000	19839000	35816000	13193	4572	12506	80490;80491;80492;80493	108684;108685;108686;108687	108686			4	
ENTQTTIK	1	Unmodified	933.47673	0.47672516	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.09	4	2	3		3	2				2	3	4	5	7.9163	4.8873	2	0.00032678	4812	160511_QHF_FH_JSI11i_1	111.95	62.589			0.81231	0.9209	23.043	13	1	Median	0.88287	0.72727	53.355	2	0	Median	0.78675	0.93771	21.329	3	1	Median	0.89849	0.87825	15.497	4	0	Median	0.8759	0.9197	14.429	4	0	Median	9781100000	5426800000	4354300000	2372600000	1156200000	1216500000	2623700000	1540600000	1083000000	2614600000	1504000000	1110600000	2170100000	1226000000	944190000	13194	1975	12507	80494;80495;80496;80497;80498;80499;80500;80501;80502;80503;80504;80505;80506;80507	108688;108689;108690;108691;108692;108693;108694;108695;108696;108697;108698;108699;108700;108701;108702;108703;108704;108705;108706	108689			19	
ENTSHKIK	2	Acetyl (K)	997.51926	0.51925868	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	1	0	0	1			By MS/MS		14.7	0.471							1	2				3		7.0789	-1.8058	2;3	0.013588	2474	160513_QHF_FH_JSI11Kac_5	52.255	36.111			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11176000	11176000	0	0	0	0	0	0	0	11176000	11176000	0	0	0	0	13195	2560	12508	80508;80509;80510	108707;108708;108709	108708	2538		3	
ENTTTIVFR	0	Unmodified	1079.5611	0.56112349	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		48.176	37.785	2	0.010444	22336	160513_QHF_FH_JSI11Kac_4	57.59	8.2311			1.0221	1.1193	25.523	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1052	1.3407	NaN	1	0	Median	0.94522	0.93447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7673400	3918900	3754500	0	0	0	4674400	2484800	2189500	2999100	1434100	1565000	0	0	0	13196	1716	12509	80511;80512	108710	108710			1	
ENTVGLHR	0	Unmodified	924.47773	0.47772821	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.67	0.471		2	4								1	2	3	9.0582	8.9973	2;3	0.0027508	6463	160511_QHF_FH_JSI12i_3	77.732	47.547			1.0909	1.1385	12.29	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0909	1.3511	NaN	1	0	Median	1.2775	1.1843	5.5798	2	0	Median	0.99708	1.018	0.37843	2	0	Median	351900000	174710000	177200000	0	0	0	47909000	26163000	21746000	128320000	57649000	70668000	175680000	90894000	84784000	13197	2299	12510	80513;80514;80515;80516;80517;80518	108711;108712;108713;108714;108715	108715			5	
ENTYPFLAMIMLK	1	Unmodified	1569.7935	0.79350797	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.822	88.758	2	2.2803E-06	52639	160513_QHF_FH_JSI10Kac_6	128.01	93.294			1.0053	0.94868	36	3	3	Plateau	0.92386	0.80007	NaN	1	1	Median	0.39531	0.47536	NaN	1	1	Median	1.0053	0.94868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	386320000	242990000	143320000	84763000	42482000	42282000	144630000	115310000	29316000	156920000	85200000	71724000	0	0	0	13198	4013	12511	80519;80520;80521	108716;108717;108718	108718			3	
ENVAFEQEK	1	Unmodified	1092.5088	0.50875357	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.749	21.62	2	0.01245	18630	160511_QHF_FH_JSI11i_1	57.348	41.146			1.635	1.5683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.635	1.5683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47693000	19694000	27999000	0	0	0	0	0	0	47693000	19694000	27999000	0	0	0	13199	2118	12512	80522	108719	108719			1	
ENVATTDTLESTTVGTSV	0	Unmodified	1823.8636	0.86363226	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	62.81	62.214	2	4.9448E-16	56562	160511_QHF_FH_JSI12i_1	156.36	143.16			1.0968	1.0584	17.797	5	3	Median	1.0424	0.86236	NaN	1	1	Median	0.7533	0.9079	NaN	1	0	Median	1.1754	1.1398	10.478	2	2	Median	1.2054	1.2904	NaN	1	0	Median	427810000	214450000	213350000	88916000	53341000	35575000	79310000	43201000	36109000	167820000	72843000	94975000	91764000	45070000	46694000	13200	2614	12513	80523;80524;80525;80526;80527	108720;108721;108722;108723;108724;108725;108726;108727;108728	108724			9	
ENVDYIIQELRR	0	Unmodified	1546.8104	0.81035532	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			61.684	61.296	3	0.047383	55331	160511_QHF_FH_JSI10i_1	12.17	1.8892			0.81923	0.97492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81923	0.97492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	420020000	232810000	187210000	0	0	0	420020000	232810000	187210000	0	0	0	0	0	0	13201	4967	12514	80528	108729	108729			1	
ENVEGHDLPASEK	1	Unmodified	1423.6579	0.657937	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	3											1	2	20.291	19.983	2;3	0.0062548	17476	160511_QHF_FH_JSI12i_1	51.841	44.195			0.74261	0.73326	24.477	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64732	0.61673	NaN	1	0	Median	0.85193	0.87182	NaN	1	0	Median	97655000	54604000	43051000	0	0	0	0	0	0	39801000	19386000	20415000	57855000	35218000	22636000	13202	4052	12515	80529;80530;80531	108730;108731	108731			2	
ENVIMSQILPCIK	1	Unmodified	1543.8102	0.81022067	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.7	89.829	2	9.1873E-06	77508	160511_QHF_FH_JSI12i_2	132.32	105.54			0.86917	0.99604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86917	0.99604	NaN	1	1	Median	35539000	18576000	16962000	0	0	0	0	0	0	0	0	0	35539000	18576000	16962000	13203	1345	12516	80532	108732	108732			1	
ENVIRPILK	1	Unmodified	1080.6655	0.66552898	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.83	0.373		1	5							2	1	2	1	38.234	37.536	2;3	0.00098437	32765	160511_QHF_FH_JSI11i_3	91.069	56.98			0.62837	0.58921	30.695	6	0	Median	0.78939	0.65534	49.59	2	0	Median	0.68609	0.76787	NaN	1	0	Median	0.62837	0.58921	4.2601	2	0	Median	0.4084	0.4093	NaN	1	0	Median	585240000	346700000	238540000	136740000	85382000	51355000	104190000	63126000	41063000	291420000	168720000	122700000	52900000	29477000	23423000	13204	4620	12517	80533;80534;80535;80536;80537;80538	108733;108734;108735;108736;108737;108738;108739	108735			7	
ENVKDYYQK	2	Acetyl (K)	1227.5772	0.57716749	925	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		41.081	32.044	2	0.043649	17539	160513_QHF_FH_JSI10Kac_3	45.137	39.978			0.59319	0.65373	82.34	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97981	1.1702	NaN	1	0	Median	0.35913	0.3652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8782500	5551400	3231000	0	0	0	2635000	1068300	1566700	6147500	4483200	1664300	0	0	0	13205	925	12518	80539;80540	108740	108740			1	
ENVLFLTSGTR	0	Unmodified	1235.651	0.65100113	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.4	2	5					4	4		2	4	4	5	66.408	60.303	2	5.1995E-07	52284	160511_QHF_FH_JSI11i_2	114.89	95.107			0.96184	1.0244	65.561	13	5	Median	1.2175	1.0433	2.5944	2	0	Median	0.80147	0.97368	48.368	4	3	Median	0.9304	0.92555	31.693	4	0	Median	0.97544	1.0583	118.82	3	2	Median	464770000	219350000	245410000	92863000	40199000	52664000	136220000	73342000	62882000	177740000	96157000	81588000	57934000	9652800	48281000	13206	2521	12519	80541;80542;80543;80544;80545;80546;80547;80548;80549;80550;80551;80552;80553;80554;80555	108741;108742;108743;108744;108745;108746;108747;108748;108749;108750;108751;108752;108753;108754;108755;108756	108749			16	
ENVLIGDGAGFK	1	Unmodified	1218.6245	0.62445203	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.34	5	1				1	5			1	5	3	3	55.154	54.497	2	2.1249E-07	49294	160511_QHF_FH_JSI11i_1	132.25	92.945			1	1.0792	62.22	6	3	Median	1.3296	1.0879	NaN	1	0	Median	0.74997	0.90062	89.141	3	2	Plateau	0.94214	0.91572	NaN	1	0	Median	1.0105	1.0706	NaN	1	1	Median	3546600000	1858800000	1687700000	697160000	342360000	354810000	1415900000	761040000	654900000	680120000	356160000	323960000	753360000	399290000	354070000	13207	997	12520	80556;80557;80558;80559;80560;80561;80562;80563;80564;80565;80566;80567	108757;108758;108759;108760;108761;108762;108763;108764;108765;108766;108767;108768;108769;108770	108758			13	
ENVNATENCISAVGK	1	Unmodified	1604.7464	0.74643444	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	36.74	36.05	2	3.9102E-125	32455	160511_QHF_FH_JSI11i_1	322.31	297.09			0.8928	0.91449	41.107	3	3	Plateau	0.52089	0.43684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94576	0.93675	NaN	1	1	Median	0.79875	0.83417	NaN	1	1	Median	397630000	205120000	192520000	33005000	21493000	11512000	0	0	0	199670000	100660000	99014000	164950000	82963000	81991000	13208	127	12521	80568;80569;80570	108771;108772;108773	108771			3	
ENVNLAQIR	0	Unmodified	1055.5724	0.57235688	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	3	2	42.007	37.758	2	1.2337E-05	33959	160511_QHF_FH_JSI11i_1	128	84.226			0.75008	0.69224	15.495	8	0	Linear	0.92514	0.7735	NaN	1	0	Median	0.6543	0.77789	20.182	2	0	Median	0.68394	0.67706	16.708	3	0	Plateau	0.79802	0.84907	24.562	2	0	Median	1490000000	870050000	619920000	207330000	105410000	101910000	402890000	252330000	150570000	531870000	311760000	220110000	347890000	200550000	147330000	13209	1620	12522	80571;80572;80573;80574;80575;80576;80577;80578	108774;108775;108776;108777;108778;108779;108780;108781;108782;108783;108784	108775			11	
ENVNSLLPVFEEFLK	1	Unmodified	1776.9298	0.92980175	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	1	2	4	102.61	102.51	2;3	1.8424E-99	90320	160511_QHF_FH_JSI11i_2	267.43	232.9			1.1289	1.1622	8.0452	9	3	Median	1.2951	1.1042	9.9019	2	0	Median	0.96291	1.1902	NaN	1	0	Median	1.131	1.1573	1.2393	2	1	Median	1.0342	1.1556	10.659	4	2	Median	933030000	438450000	494580000	166220000	75966000	90257000	181780000	93731000	88049000	193100000	81005000	112100000	391920000	187750000	204170000	13210	3860	12523	80579;80580;80581;80582;80583;80584;80585;80586;80587	108785;108786;108787;108788;108789;108790;108791;108792;108793;108794;108795;108796	108793			12	
ENVSNCIQLK	1	Unmodified	1203.5918	0.59177169	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	37.883	35.215	2	2.2893E-05	31386	160511_QHF_FH_JSI11i_1	107.79	53.722			0.94565	0.82073	26.553	3	1	Plateau	0.94565	0.77745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90966	0.90527	NaN	1	1	Median	1.2598	1.3034	NaN	1	0	Median	320100000	174940000	145160000	70870000	27506000	43364000	114670000	64609000	50058000	133320000	82171000	51152000	1236800	654120	582700	13211	5395	12524	80588;80589;80590;80591;80592	108797;108798;108799;108800;108801;108802;108803;108804	108797			8	
ENVTVLDK	1	Unmodified	916.48656	0.48656157	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.201	26.889	2	0.020642	23785	160511_QHF_FH_JSI10i_1	56.258	29.004			0.41671	0.49322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41671	0.49322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42976000	34505000	8470600	0	0	0	42976000	34505000	8470600	0	0	0	0	0	0	13212	3375	12525	80593	108805	108805			1	
ENVVQSVTSVAEK	1	Unmodified	1388.7147	0.7147236	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	5.29	4	1	1	1	5	6	1	3	2	5	11	5	3	60.461	53.126	2;3	2.8015E-25	6823	160513_QHF_FH_JSI9Kac_3	198.57	169.1			1.2908	1.4117	94.966	19	7	Median	1.2908	1.0399	40.265	3	1	Median	0.86031	1.027	80.851	9	5	Median	2.118	2.0477	152.17	4	1	Median	2.3661	2.3952	9.9266	3	0	Plateau	1589600000	447320000	1142200000	391030000	151470000	239560000	770890000	181280000	589610000	266450000	63731000	202720000	161180000	50833000	110340000	13213	599	12526	80594;80595;80596;80597;80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610;80611;80612;80613;80614;80615;80616;80617	108806;108807;108808;108809;108810;108811;108812;108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823;108824;108825;108826;108827;108828;108829;108830;108831;108832;108833;108834	108817			29	
ENVVVIHPDFR	0	Unmodified	1323.6935	0.69353465	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.323	51.367	3	0.017745	43995	160511_QHF_FH_JSI12i_2	25.718	22.767			1.2509	1.2899	21.371	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1139	1.109	NaN	1	1	Median	1.4048	1.5003	NaN	1	0	Median	73010000	29219000	43791000	0	0	0	0	0	0	46331000	18523000	27808000	26679000	10696000	15983000	13214	15	12527	80618;80619	108835;108836	108835			2	
ENVYDELR	0	Unmodified	1036.4825	0.48253882	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.558	37.125	2	0.0055468	33701	160511_QHF_FH_JSI12i_1	65.305	44.005			0.89996	0.91109	11.546	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85111	0.83966	NaN	1	1	Median	0.95162	0.98859	NaN	1	0	Median	394690000	187830000	206860000	0	0	0	0	0	0	226500000	111730000	114770000	168190000	76103000	92085000	13215	403	12528	80620;80621	108837;108838	108838			2	
ENWGPWSAGGSR	0	Unmodified	1302.5741	0.5741478	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.952	48.715	2	0.0088461	41704	160511_QHF_FH_JSI12i_3	48.568	37.404			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13216	2332	12529	80622	108839	108839			1	
ENYHYVTILMK	1	Oxidation (M)	1425.6962	0.69623677	5021	Q9NV35	NUDT15	Probable 8-oxo-dGTP diphosphatase NUDT15	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				56.287	47.091	2	0.057573	24992	160513_QHF_FH_JSI9Kac_6	33.875	22.009			0.84856	0.69761	NaN	1	0	Median	0.84856	0.69761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6466100	3856300	2609800	6466100	3856300	2609800	0	0	0	0	0	0	0	0	0	13217	5021	12530	80623	108840	108840			1	
ENYHYVTILMK	1	Unmodified	1409.7013	0.70132214	5021	Q9NV35	NUDT15	Probable 8-oxo-dGTP diphosphatase NUDT15	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	3	2		1	66.355	57.621	2;3	4.6974E-06	31625	160513_QHF_FH_JSI10Kac_6	101.72	89.093			0.87314	0.88535	20.188	6	4	Median	0.89466	0.7619	15.066	3	2	Median	0.82059	0.96493	5.5914	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0443	1.0997	NaN	1	1	Median	462020000	224640000	237380000	172670000	86458000	86216000	215370000	100320000	115050000	0	0	0	73980000	37860000	36120000	13218	5021	12530	80624;80625;80626;80627;80628;80629	108841;108842;108843;108844;108845;108846;108847;108848	108846			8	
ENYNQYDLNR	0	Unmodified	1327.5793	0.57929275	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			27.633	26.843	2	0.00047316	23754	160511_QHF_FH_JSI10i_1	73.499	60.146			0.97545	0.96964	24.938	2	0	Median	1.3634	1.1566	NaN	1	0	Median	0.69788	0.81288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115940000	46496000	69445000	64970000	17482000	47488000	50971000	29014000	21957000	0	0	0	0	0	0	13219	1052	12531	80630;80631	108849	108849			1	
ENYTWSQDYTDLEVR	0	Unmodified	1917.8381	0.83808621	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.662	69.067	2	0.00097768	62939	160511_QHF_FH_JSI12i_1	80.469	65.593			1.169	1.1589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.169	1.1589	NaN	1	1	Median	10501000	5856200	4644600	0	0	0	0	0	0	0	0	0	10501000	5856200	4644600	13220	3404	12532	80632	108850	108850			1	
ENYVWNVLLHR	0	Unmodified	1441.7466	0.74663285	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	3	2	81.344	76.254	3	8.5674E-12	38343	160513_QHF_FH_JSI12Kac_6	136.5	127.77			0.95723	0.97147	28.961	7	3	Median	1.3402	1.1287	14.654	2	1	Median	0.69122	0.80449	46.737	2	1	Median	0.82585	0.78496	30.148	2	1	Median	0.75851	0.81283	NaN	1	0	Median	429820000	229880000	199940000	85003000	37196000	47807000	196720000	118070000	78651000	105520000	48533000	56989000	42570000	26078000	16492000	13221	3838	12533	80633;80634;80635;80636;80637;80638;80639;80640;80641	108851;108852;108853;108854;108855;108856;108857;108858;108859;108860;108861;108862;108863	108862			13	
EPAAPVSIQR	0	Unmodified	1066.5771	0.57710791	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.915	28.325	2	0.010235	24939	160511_QHF_FH_JSI9i_1	47.96	31.183			0.95078	0.97003	3.4036	4	0	Median	1.208	0.99598	NaN	1	0	Median	0.8044	0.94475	NaN	1	0	Median	1.026	0.99696	NaN	1	0	Median	0.88109	0.93499	NaN	1	0	Median	3428600000	1669300000	1759300000	761970000	332520000	429450000	976530000	505700000	470840000	859270000	402370000	456900000	830830000	428720000	402100000	13222	2579	12534	80642;80643;80644;80645	108864;108865;108866;108867	108867			4	
EPAFEDITLESER	0	Unmodified	1534.7151	0.71511753	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.408	62.34	2	0.04197	55380	160511_QHF_FH_JSI9i_1	45.879	34.974			1.9314	1.6383	NaN	1	1	Median	1.9314	1.6383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29420000	9194300	20226000	29420000	9194300	20226000	0	0	0	0	0	0	0	0	0	13223	521	12535	80646	108868	108868			1	
EPAFEDITLESERK	1	Unmodified	1662.8101	0.81008055	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	53.925	53.073	3	8.9401E-05	45476	160511_QHF_FH_JSI12i_2	77.372	70.643			1.0903	1.2267	19.198	5	0	Median	0.99473	0.85057	NaN	1	0	Median	1.0903	1.3313	NaN	1	0	Median	1.2929	1.2723	5.1621	2	0	Median	0.91725	1.027	NaN	1	0	Median	514120000	235190000	278930000	85575000	37704000	47872000	127980000	64298000	63686000	210220000	87392000	122830000	90337000	45799000	44538000	13224	521	12536	80647;80648;80649;80650;80651	108869;108870;108871;108872;108873;108874;108875	108870			7	
EPALNEANLSNLK	1	Unmodified	1411.7307	0.73070802	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	55.336	52.91	2;3	5.2804E-05	47006	160511_QHF_FH_JSI9i_1	133.05	114.3			1.064	1.0194	38.848	5	2	Median	1.064	0.8713	NaN	1	0	Median	0.99224	1.171	36.24	2	1	Median	2.2115	2.1547	NaN	1	0	Median	0.97712	1.0194	NaN	1	1	Median	2846700000	1357300000	1489400000	701010000	347940000	353070000	824390000	410450000	413940000	746330000	297490000	448840000	574980000	301430000	273550000	13225	2244	12537	80652;80653;80654;80655;80656;80657	108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887	108885			12	
EPAPDSGLLGLFQGQNSLLH	0	Unmodified	2092.0589	0.058918448	3964	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.66	101.59	3	0.037044	92284	160511_QHF_FH_JSI11i_1	36.744	23.332			1.2322	1.1956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2322	1.1956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59587000	28656000	30931000	0	0	0	0	0	0	59587000	28656000	30931000	0	0	0	13226	3964	12538	80658	108888	108888			0	
EPATINYPFEK	1	Unmodified	1307.6398	0.63976774	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.427	53.764	2	0.00032027	48815	160511_QHF_FH_JSI12i_1	75.509	53.423			0.67188	0.87395	14.243	4	0	Linear	1.1313	0.94145	NaN	1	0	Median	0.69172	0.81129	NaN	1	0	Median	0.73647	0.72221	NaN	1	0	Median	0.94344	0.98634	NaN	1	0	Median	522770000	256180000	266590000	116420000	48731000	67688000	146730000	67680000	79049000	139220000	82467000	56758000	120400000	57303000	63094000	13227	108	12539	80659;80660;80661;80662	108889;108890;108891;108892;108893	108890			5	
EPAVLELEGK	1	Unmodified	1083.5812	0.58119023	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	49.796	49.124	2	0.0023996	44395	160511_QHF_FH_JSI11i_1	60.102	48.334			0.91439	1.2398	23.547	6	0	Linear	0.95333	0.81589	NaN	1	0	Median	0.71813	0.84699	22.049	2	0	Median	1.0777	1.0721	27.14	2	0	Median	1.2036	1.2597	NaN	1	0	Median	906500000	523890000	382600000	76855000	47038000	29816000	273820000	166290000	107530000	321270000	169180000	152090000	234550000	141380000	93168000	13228	2169	12540	80663;80664;80665;80666;80667;80668	108894;108895;108896	108894			3	
EPAVLMGILGIYK	1	Unmodified	1402.7894	0.78940887	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				93.965	85.024	2	0.017309	48009	160513_QHF_FH_JSI9Kac_6	48.44	28.233			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13229	3102	12541	80669	108897	108897			1	
EPELFQTVAEGLR	0	Unmodified	1487.762	0.76200815	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		83.955	83.333	2	0.0016814	74101	160511_QHF_FH_JSI10i_2	61.213	37.608			0.50961	0.56344	23.376	2	1	Median	NaN	NaN	NaN	0	0	Median	0.54039	0.66471	NaN	1	0	Median	0.48058	0.4776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66758000	38357000	28401000	0	0	0	34083000	18438000	15645000	32675000	19918000	12756000	0	0	0	13230	4727	12542	80670;80671	108898;108899	108899			2	
EPELLEPIPYEFMA	0	Unmodified	1676.8008	0.80076142	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.47	102.38	2	0.00013061	93169	160511_QHF_FH_JSI10i_1	99.653	89.966			0.94549	0.90693	5.2733	4	0	Linear	1.2272	1.0194	NaN	1	0	Median	0.77071	0.90673	NaN	1	0	Median	0.95488	0.93614	NaN	1	0	Median	0.93619	0.98845	NaN	1	0	Median	926250000	495190000	431060000	162190000	69984000	92206000	301980000	170030000	131950000	247530000	144430000	103100000	214550000	110740000	103800000	13231	1591	12543	80672;80673;80674;80675	108900;108901;108902;108903;108904;108905;108906	108904			7	
EPELQQYVPQLQNNTILR	0	Unmodified	2182.1382	0.1382314	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								5	3	2	2	88.055	87.573	2;3	1.5141E-08	79623	160511_QHF_FH_JSI12i_1	135.58	114.28			0.93468	0.98338	17.586	12	4	Median	1.1943	0.97396	25.733	5	4	Median	0.88249	1.0307	16.82	3	0	Median	1.0243	0.99763	4.4614	2	0	Median	0.91826	0.96028	4.7227	2	0	Median	713650000	366650000	347000000	170610000	78816000	91793000	247960000	133000000	114950000	130790000	67607000	63180000	164300000	87223000	77080000	13232	2502	12544	80676;80677;80678;80679;80680;80681;80682;80683;80684;80685;80686;80687	108907;108908;108909;108910;108911;108912;108913;108914;108915;108916;108917;108918;108919;108920;108921;108922;108923;108924;108925;108926;108927	108914			21	
EPEMPGPREESEEEEDEDDEEEEEEEK	1	Unmodified	3278.2212	0.22122566	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		36.365	36.11	3	0.025567	32496	160511_QHF_FH_JSI11i_1	28.145	22.937			0.9493	0.91602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9493	0.91602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19498000	3587500	15910000	0	0	0	0	0	0	19498000	3587500	15910000	0	0	0	13233	1444	12545	80688	108928	108928			1	
EPEQLRK	1	Unmodified	898.48723	0.48723027	936;1763	P09651;Q32P51;P51991	HNRNPA1;HNRNPA1L2;HNRNPA3	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.2	3	2	5				2	5		3	3	5	6	6.3415	2.7525	2;3	0.0023675	3354	160511_QHF_FH_JSI12i_3	73.039	20.356			0.91608	0.84763	17.884	16	4	Median	1.0062	0.79625	5.655	3	0	Plateau	0.98925	1.1572	25.232	3	2	Median	0.93621	0.90326	14.359	4	1	Median	0.79608	0.82821	10.936	6	1	Median	14802000000	7559400000	7242300000	1631900000	785670000	846230000	244290000	129900000	114390000	5536200000	2311200000	3225100000	7389300000	4332700000	3056600000	13234	936;1763	12546	80689;80690;80691;80692;80693;80694;80695;80696;80697;80698;80699;80700;80701;80702;80703;80704;80705	108929;108930;108931;108932;108933;108934;108935;108936;108937;108938;108939;108940;108941;108942;108943;108944	108943			16	
EPESFPFVILGNK	1	Unmodified	1475.766	0.76603089	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										1	3	94.052	93.58	2;3	0.00087771	85098	160511_QHF_FH_JSI12i_1	67.207	50.829			3.3424	3.3547	101.8	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79407	0.77995	NaN	1	1	Median	1.2416	1.2594	138.55	2	1	Median	33554000	11239000	22315000	0	0	0	0	0	0	3868700	2050700	1818100	29686000	9188200	20497000	13235	1729	12547	80706;80707;80708;80709	108945;108946;108947;108948	108947			4	
EPESILQVLSQMEK	1	Unmodified	1629.8284	0.82837315	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	101.61	101.5	2;3	5.8791E-15	87368	160511_QHF_FH_JSI12i_2	164.48	143.11			0.97487	1.0306	4.3449	4	0	Median	1.1478	0.97634	NaN	1	0	Median	0.85298	1.0459	NaN	1	0	Median	1.004	1.0155	NaN	1	0	Median	0.94657	1.0814	NaN	1	0	Median	961810000	480490000	481320000	158390000	70825000	87563000	189990000	108010000	81984000	298640000	141960000	156690000	314790000	159700000	155090000	13236	1111	12548	80710;80711;80712;80713;80714	108949;108950;108951;108952;108953;108954	108950			5	
EPEVLSTMAIIVNK	1	Unmodified	1542.8327	0.83273025	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	91.136	90.684	2	0.0015901	82292	160511_QHF_FH_JSI10i_1	61.932	48.976			0.97183	0.96919	20.852	5	3	Median	1.4575	1.283	NaN	1	1	Median	0.78885	0.93085	3.7338	2	1	Median	0.97183	0.96919	NaN	1	0	Median	1.3035	1.4524	NaN	1	1	Median	92383000	49637000	42747000	16830000	5813200	11017000	33111000	20668000	12443000	26857000	15424000	11434000	15584000	7731300	7853000	13237	231	12549	80715;80716;80717;80718;80719	108955;108956;108957;108958;108959	108956			5	
EPEYVPWTATSGPGGIR	0	Unmodified	1815.8792	0.87916317	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	68.261	67.739	2	0.00058569	61535	160511_QHF_FH_JSI11i_1	61.11	44.478			1.1191	1.0946	9.2717	5	3	Median	1.2489	1.041	NaN	1	0	Median	0.98114	1.1545	15.017	2	2	Median	1.1502	1.0946	NaN	1	0	Median	1.1191	1.1959	NaN	1	1	Median	201080000	106160000	94922000	36304000	16642000	19662000	93301000	50761000	42541000	48977000	27988000	20988000	22499000	10768000	11731000	13238	3765	12550	80720;80721;80722;80723;80724	108960;108961;108962;108963;108964;108965	108960			6	
EPFFHGHDNYDQLVR	0	Unmodified	1872.8543	0.8543454	2076	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.723	50.487	3	0.0030523	43244	160511_QHF_FH_JSI12i_3	45.864	39.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13239	2076	12551	80725	108966	108966			1	
EPFFHGQDNYDQLVR	0	Unmodified	1863.854	0.85401105	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	59.563	58.929	3	0.0008777	52135	160511_QHF_FH_JSI10i_2	54.859	44.578			1.0552	1.1573	16.642	7	2	Median	0.89448	0.78189	NaN	1	0	Median	1.0366	1.2287	NaN	1	0	Median	1.1749	1.1039	9.4278	3	2	Median	1.1291	1.1969	4.7554	2	0	Median	327840000	138480000	189350000	32169000	17019000	15150000	49906000	22960000	26946000	158900000	61627000	97275000	86861000	36878000	49983000	13240	1165	12552	80726;80727;80728;80729;80730;80731;80732	108967;108968;108969;108970;108971;108972;108973;108974	108973			7	
EPFGTEGR	0	Unmodified	891.40865	0.4086456	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	12.778	12.301	2	0.018251	9917	160511_QHF_FH_JSI11i_1	47.849	21.74			0.96871	0.96672	10.265	7	0	Median	1.2889	1.0972	4.9091	2	0	Median	0.7484	0.88525	NaN	1	0	Median	0.95933	0.94893	2.6262	2	0	Median	0.9378	1.017	14.836	2	0	Median	3999700000	1902400000	2097200000	915990000	374650000	541340000	896730000	460170000	436570000	1202200000	585840000	616390000	984700000	481770000	502920000	13241	1000	12553	80733;80734;80735;80736;80737;80738;80739	108975;108976;108977;108978;108979	108975			5	
EPFHSILSVLK	1	Unmodified	1268.7129	0.71287311	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	3	3	2	77.938	77.118	2;3	1.8004E-13	68370	160511_QHF_FH_JSI11i_3	122.7	114.77			0.90031	0.92754	11.271	10	0	Median	1.1948	0.99038	5.8229	3	0	Median	0.76663	0.93337	8.7368	3	0	Median	0.90031	0.86849	1.1412	2	0	Median	0.8651	0.86361	25.516	2	0	Median	691480000	381990000	309480000	90297000	38946000	51351000	129600000	69758000	59842000	185740000	97544000	88195000	285840000	175750000	110100000	13242	3623	12554	80740;80741;80742;80743;80744;80745;80746;80747;80748;80749;80750	108980;108981;108982;108983;108984;108985;108986;108987;108988;108989;108990;108991;108992;108993;108994;108995;108996;108997;108998;108999	108981			19	
EPFLLSGGDDGALK	1	Unmodified	1417.7089	0.70890994	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.8	66.2	2	0.0002374	60007	160511_QHF_FH_JSI10i_1	85.813	67.949			0.82534	0.90394	13.485	4	0	Median	1.2294	0.9876	NaN	1	0	Median	0.82523	0.96663	NaN	1	0	Median	0.76675	0.7383	NaN	1	0	Median	0.82546	0.8453	NaN	1	0	Median	189970000	99778000	90195000	39298000	16921000	22377000	40639000	22472000	18168000	51943000	26613000	25330000	58092000	33772000	24320000	13243	4350	12555	80751;80752;80753;80754	109000;109001;109002;109003;109004;109005;109006	109004			7	
EPFLQQLK	1	Unmodified	1001.5546	0.55458155	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.4	0.49	3	2								2	1		2	50.397	49.449	2	0.0080787	43209	160511_QHF_FH_JSI9i_2	57.559	46.686			0.864	0.88474	9.9802	5	0	Median	0.91961	0.76577	7.8539	2	0	Median	0.74588	0.88474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84982	0.91011	3.4005	2	0	Median	524850000	275190000	249660000	171150000	84275000	86871000	111860000	55552000	56303000	0	0	0	241850000	135360000	106490000	13244	5494	12556	80755;80756;80757;80758;80759	109007;109008;109009;109010;109011;109012;109013	109013			7	
EPFLVPAPPPPLK	1	Unmodified	1400.8068	0.80677349	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	81.346	80.852	2;3	0.00034249	73569	160511_QHF_FH_JSI11i_1	62.924	49.245			1.0407	0.95599	10.318	8	5	Median	1.0727	0.87427	7.9474	2	1	Median	0.74383	0.84138	NaN	1	0	Median	1.082	1.0513	4.8511	3	2	Median	0.96442	1.005	9.7823	2	2	Median	225920000	120510000	105400000	62298000	35325000	26973000	17857000	8209300	9647600	92682000	46331000	46351000	53079000	30648000	22430000	13245	3223	12557	80760;80761;80762;80763;80764;80765;80766;80767;80768	109014;109015;109016;109017;109018;109019;109020;109021;109022;109023;109024;109025	109015			12	
EPFPTIYVDSQK	1	Unmodified	1422.7031	0.70309628	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.416	61.783	2;3	1.1407E-07	55820	160511_QHF_FH_JSI10i_1	136.48	122.27			0.93221	0.92681	7.2094	8	1	Median	1.1327	0.93413	8.3926	2	0	Median	0.75962	0.88962	0.7878	2	1	Median	0.99431	0.96506	14.358	2	0	Median	0.93221	0.96301	0.41533	2	0	Median	3026900000	1522200000	1504600000	782550000	394690000	387860000	865380000	438950000	426430000	746070000	341370000	404700000	632890000	347220000	285660000	13246	375	12558	80769;80770;80771;80772;80773;80774;80775;80776	109026;109027;109028;109029;109030;109031;109032;109033;109034;109035;109036;109037;109038	109033			13	
EPFTIAQGK	1	Unmodified	989.5182	0.51819605	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5.33	6.13	2						1			1			2	35.403	31.497	2	0.012261	18549	160513_QHF_FH_JSI12Kac_4	55.37	39.226			0.88174	0.83051	27.159	3	2	Median	1.023	0.83051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68544	0.73577	37.113	2	1	Median	1284100000	836620000	447510000	637220000	394520000	242700000	0	0	0	0	0	0	646910000	442100000	204810000	13247	1444	12559	80777;80778;80779	109039;109040;109041	109041			3	
EPFTLEAYYSSPQDLPYPDPAIAQFSVQK	1	Unmodified	3300.5867	0.58667613	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.45	101.42	3	0.00042166	92153	160511_QHF_FH_JSI10i_1	41.247	35.086			0.77549	0.88998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77549	0.88998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120140000	84507000	35635000	0	0	0	120140000	84507000	35635000	0	0	0	0	0	0	13248	1417	12560	80780	109042	109042			1	
EPGRPTPTYHLVPNTSQSQVEEDVSSPPQR	0	Unmodified	3331.6069	0.60691107	3837	Q92536	SLC7A6	Y+L amino acid transporter 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				52.994	51.412	4	8.8038E-08	42056	160511_QHF_FH_JSI9i_3	56.914	54.776			1.4956	1.2451	NaN	1	0	Median	1.4956	1.2451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46090000	18841000	27249000	46090000	18841000	27249000	0	0	0	0	0	0	0	0	0	13249	3837	12561	80781	109043;109044	109043			2	
EPHFQSLLEAHDIVASK	1	Unmodified	1919.9741	0.97412619	5168	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	64.974	64.78	3;4	2.2401E-06	55864	160511_QHF_FH_JSI12i_3	96.487	86.957			0.95147	0.97141	20.1	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95147	0.89738	NaN	1	0	Median	1.0956	1.1296	21.332	2	0	Median	307170000	161340000	145820000	0	0	0	0	0	0	59902000	27687000	32215000	247260000	133660000	113610000	13250	5168	12562	80782;80783;80784	109045;109046;109047;109048	109047			4	
EPHGWVVDLVNK	1	Unmodified	1391.7197	0.7197494	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	61.622	61.347	3	8.9112E-05	53076	160511_QHF_FH_JSI12i_3	60.628	53.084			1.5476	1.5414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5476	1.5414	NaN	1	0	Median	60983000	26858000	34125000	0	0	0	0	0	0	0	0	0	60983000	26858000	34125000	13251	5468	12563	80785;80786	109049;109050	109050			2	
EPHPLQFLR	0	Unmodified	1135.6138	0.61382777	2289	Q0PNE2	ELP6	Elongator complex protein 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.3	47.18	3	0.00021143	41695	160511_QHF_FH_JSI11i_3	69.812	58.098			1.1169	1.0644	3.3897	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1043	1.0392	NaN	1	1	Median	1.1298	1.0902	NaN	1	1	Median	82126000	37275000	44851000	0	0	0	0	0	0	37712000	20399000	17313000	44415000	16876000	27538000	13252	2289	12564	80787;80788	109051;109052	109051			2	
EPHSFQSR	0	Unmodified	986.45699	0.45699277	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.6	5.2			4						1		1	2	2	5.8615	4.3916	2;3	0.0009735	2151	160513_QHF_FH_JSI12Kac_6	68.846	40.672			0.89936	0.90837	16.628	5	0	Median	NaN	NaN	NaN	0	0	Median	0.68159	0.78939	NaN	1	0	Median	1.1271	1.0719	1.2788	2	0	Median	0.7824	0.82624	13.402	2	0	Median	585360000	272490000	312870000	0	0	0	33260000	18068000	15192000	377950000	165150000	212790000	174160000	89274000	84884000	13253	4834	12565	80789;80790;80791;80792;80793	109053;109054;109055	109055			3	
EPIDIEEGIK	1	Unmodified	1141.5867	0.58666954	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.995	48.58	2	0.052083	43966	160511_QHF_FH_JSI11i_1	42.743	20.998			1.2488	1.1972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2488	1.1972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40299000	15043000	25256000	0	0	0	0	0	0	40299000	15043000	25256000	0	0	0	13254	5223	12566	80794	109056	109056			1	
EPIDIEEGIKK	2	Unmodified	1269.6816	0.68163256	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	41.224	39.853	3	0.041198	34028	160511_QHF_FH_JSI12i_2	28.283	24.638			1.0396	1.1103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0396	1.1103	NaN	1	1	Median	41060000	21095000	19965000	0	0	0	0	0	0	0	0	0	41060000	21095000	19965000	13255	5223	12567	80795	109057	109057			1	
EPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSK	1	Unmodified	3929.9494	0.94943416	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	91.99	91.759	3	0.0012665	83252	160511_QHF_FH_JSI10i_1	38.871	37.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13256	2536	12568	80796;80797	109058;109059	109059			2	
EPIEEEPTGAGLNK	1	Unmodified	1482.7202	0.72020291	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			34.197	33.403	2	0.0016613	29373	160511_QHF_FH_JSI9i_1	61.344	43.908			1.4778	1.4545	28.083	2	0	Median	1.4474	1.1925	NaN	1	0	Median	1.5088	1.774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66794000	30983000	35811000	38380000	18783000	19597000	28415000	12200000	16214000	0	0	0	0	0	0	13257	3061	12569	80798;80799	109060;109061;109062	109062			3	
EPIMPAPGQEETVR	0	Unmodified	1552.7555	0.75554256	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	43.395	42.703	2	3.3965E-07	38503	160511_QHF_FH_JSI10i_1	89.805	68.432			0.99501	0.7608	16.577	7	5	Linear	1.2351	1.0147	21.145	2	1	Median	0.60375	0.70025	NaN	1	0	Median	0.97912	0.96327	2.2786	2	2	Median	1.0067	1.0251	7.7282	2	2	Median	1364600000	681140000	683430000	321400000	150910000	170500000	207690000	106580000	101110000	472240000	243240000	229000000	363240000	180410000	182820000	13258	3927	12570	80800;80801;80802;80803;80804;80805;80806;80807	109063;109064;109065;109066;109067;109068;109069;109070	109068			8	
EPINSTTPFNSSK	1	Unmodified	1420.6834	0.68342347	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.718	33.476	2	0.00021326	30044	160511_QHF_FH_JSI11i_1	72.531	44.133			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13259	3819	12571	80808	109071	109071			1	
EPIPVLPTVHYNMGGIPTNYK	1	Unmodified	2339.1984	0.19838882	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.73	4	7	4							2	3	6	4	85.15	84.553	2;3	1.4085E-28	74601	160511_QHF_FH_JSI9i_2	169.62	169.62			0.90667	0.93136	47.205	14	5	Median	1.1455	0.94037	1.304	2	0	Median	0.81794	1.0056	3.9461	3	0	Plateau	0.93493	0.88598	16.93	5	3	Median	0.82647	0.85414	85.047	4	2	Median	3440000000	1741200000	1698700000	673020000	287070000	385950000	589850000	314770000	275080000	1333500000	683090000	650370000	843640000	456330000	387320000	13260	1367	12572	80809;80810;80811;80812;80813;80814;80815;80816;80817;80818;80819;80820;80821;80822;80823	109072;109073;109074;109075;109076;109077;109078;109079;109080;109081;109082;109083;109084;109085;109086;109087;109088;109089;109090;109091;109092;109093;109094;109095;109096;109097;109098;109099;109100;109101;109102;109103;109104	109093			32	
EPIPVLPTVHYNMGGIPTNYK	1	Oxidation (M)	2355.1933	0.19330344	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	76.116	75.269	3	1.1071E-05	66045	160511_QHF_FH_JSI11i_2	63.454	55.267			0.80481	0.88231	4.3841	4	0	Median	0.97802	0.86839	NaN	1	0	Median	0.73269	0.92098	NaN	1	0	Median	0.80818	0.83173	NaN	1	0	Median	0.80144	0.89646	NaN	1	0	Median	311000000	163220000	147780000	48382000	22555000	25828000	96670000	52816000	43854000	93626000	52260000	41367000	72320000	35592000	36727000	13261	1367	12572	80824;80825;80826;80827;80828	109105;109106;109107;109108;109109;109110;109111;109112;109113;109114;109115	109111		998	11	
EPKDEAQNEGPATESEAPLK	2	Unmodified	2138.9968	0.9967717	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	26.685	26.137	3	4.1132E-05	23240	160511_QHF_FH_JSI12i_1	72.086	56.494			0.72111	0.73981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72111	0.73981	NaN	1	0	Median	28968000	15874000	13094000	0	0	0	0	0	0	0	0	0	28968000	15874000	13094000	13262	3499	12573	80829	109116	109116			1	
EPLFGISTGNLITGLAAGAK	1	Unmodified	1929.0571	0.057127534	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.774	5	8	8							4	6	6	5	101.5	101.41	2;3	8.1313E-162	89093	160511_QHF_FH_JSI11i_2	309.23	295.07			0.94072	1.0244	8.5804	21	2	Median	1.2497	1.0672	7.2559	4	2	Median	0.8749	1.029	6.0236	6	0	Median	0.96069	0.92182	9.515	6	0	Median	0.92437	1.0264	4.1253	5	0	Median	9371500000	4809100000	4562400000	1760500000	756770000	1003700000	1792400000	1002600000	789820000	2858300000	1515300000	1343000000	2960200000	1534400000	1425800000	13263	1372	12574	80830;80831;80832;80833;80834;80835;80836;80837;80838;80839;80840;80841;80842;80843;80844;80845;80846;80847;80848;80849;80850	109117;109118;109119;109120;109121;109122;109123;109124;109125;109126;109127;109128;109129;109130;109131;109132;109133;109134;109135;109136;109137;109138;109139;109140;109141;109142;109143;109144;109145;109146;109147;109148;109149;109150	109142			34	
EPLGNVLFSPICLSTSLSLAQVGAK	1	Unmodified	2600.3884	0.38837443	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.27	102.17	3	9.0812E-17	89946	160511_QHF_FH_JSI11i_2	120.63	102.38			0.77374	0.78502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77374	0.78502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134490000	82204000	52290000	0	0	0	0	0	0	134490000	82204000	52290000	0	0	0	13264	1464	12575	80851	109151	109151			1	
EPLGPALAHELR	0	Unmodified	1301.7092	0.70918471	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	4	2	49.404	48.741	2;3	2.3947E-05	42765	160511_QHF_FH_JSI9i_2	77.912	67.586			0.97567	0.92051	42.902	8	2	Median	0.61555	0.51976	77.643	2	0	Median	0.72344	0.90237	2.9842	2	1	Median	1.0016	0.97429	11.315	3	1	Median	1.1259	1.1304	NaN	1	0	Median	1623200000	810760000	812470000	312930000	153010000	159920000	375630000	219570000	156060000	772970000	360970000	412000000	161700000	77215000	84484000	13265	2374	12576	80852;80853;80854;80855;80856;80857;80858;80859;80860;80861	109152;109153;109154;109155;109156;109157;109158;109159;109160;109161;109162;109163;109164	109154			13	
EPLGTHGHMK	1	Unmodified	1105.5339	0.53386288	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.9006	5.9961	2	0.0060402	3573	160511_QHF_FH_JSI12i_3	62.823	42.124			7.0604	7.2072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.0604	7.2072	NaN	1	1	Median	401490000	58427000	343060000	0	0	0	0	0	0	0	0	0	401490000	58427000	343060000	13266	2795	12577	80862	109165	109165			1	
EPLISGWLFFR	0	Unmodified	1363.7289	0.72885752	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			94.793	89.073	2	0.0053933	51300	160513_QHF_FH_JSI10Kac_6	67.704	49.369			0.82542	0.95433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82542	0.95433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56289000	30940000	25349000	0	0	0	56289000	30940000	25349000	0	0	0	0	0	0	13267	1103	12578	80863	109166	109166			1	
EPLMEEYSIATQVWK	1	Unmodified	1822.8811	0.881137	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	91.939	91.42	3	0.0006617	78978	160511_QHF_FH_JSI12i_2	65.472	55.266			1.6295	1.9359	24.312	3	3	Median	2.4858	2.1734	NaN	1	1	Median	1.6295	1.9359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.236	1.3627	NaN	1	1	Median	50285000	16194000	34091000	12431000	4376600	8054600	17957000	5279300	12678000	0	0	0	19897000	6538000	13359000	13268	2168	12579	80864;80865;80866	109167;109168;109169;109170;109171	109167			5	
EPLPPIQQHIWNMLNPPAEVTTK	1	Unmodified	2652.3734	0.37339307	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	3	3	100.03	99.957	3;4	1.8349E-30	86504	160511_QHF_FH_JSI12i_3	176.1	176.1			0.90452	0.94156	5.3518	10	1	Median	1.1252	0.96508	NaN	1	0	Median	0.78414	0.97657	9.0359	3	1	Median	1.0069	0.94127	1.2191	3	0	Plateau	0.89978	0.91091	1.6633	3	0	Plateau	2909600000	1542300000	1367300000	192590000	85124000	107460000	398570000	228680000	169890000	995300000	523070000	472230000	1323200000	705480000	617710000	13269	1024	12580	80867;80868;80869;80870;80871;80872;80873;80874;80875;80876	109172;109173;109174;109175;109176;109177;109178;109179;109180;109181;109182;109183;109184;109185;109186;109187;109188;109189;109190;109191;109192;109193;109194;109195;109196;109197;109198;109199;109200;109201;109202;109203;109204;109205;109206;109207;109208;109209;109210	109207			39	
EPLPPIQQHIWNMLNPPAEVTTK	1	Oxidation (M)	2668.3683	0.36830769	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	85.089	84.855	3	1.2859E-19	73749	160511_QHF_FH_JSI12i_3	145.25	123.24			0.90668	0.91482	10.335	3	1	Plateau	1.2804	1.0963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0336	0.98581	NaN	1	0	Median	0.87091	0.89158	NaN	1	0	Median	239640000	113200000	126440000	20599000	7120900	13478000	0	0	0	81859000	41267000	40592000	137180000	64812000	72366000	13270	1024	12580	80877;80878;80879	109211;109212;109213;109214;109215	109215		620	5	
EPLPTLPLGR	0	Unmodified	1091.6339	0.63389451	336	O43464	HTRA2	Serine protease HTRA2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		2	1	65.939	65.229	2	0.03243	59426	160511_QHF_FH_JSI12i_1	39.305	26.948			0.7404	0.78403	12.637	5	0	Median	0.822	0.68123	19.877	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77968	0.77135	5.4383	2	0	Median	0.73287	0.79034	NaN	1	0	Median	149420000	84469000	64955000	43878000	25050000	18828000	0	0	0	68850000	38646000	30204000	36696000	20773000	15923000	13271	336	12581	80880;80881;80882;80883;80884	109216	109216			1	
EPLQVMQQVLNIISLLWK	1	Unmodified	2151.2126	0.21258232	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.01	100.29	3	9.5884E-12	59464	160513_QHF_FH_JSI10Kac_6	121.74	111.95			1.0695	1.2634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0695	1.2634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119890000	59258000	60636000	0	0	0	119890000	59258000	60636000	0	0	0	0	0	0	13272	5106	12582	80885	109217;109218	109218			2	
EPLSNDGAAPGATPASGSAASK	1	Unmodified	1954.9232	0.92321283	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.439	25.891	2	3.0682E-05	23070	160511_QHF_FH_JSI12i_1	79.022	62.672			0.92393	0.96392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92393	0.96392	NaN	1	1	Median	8102000	6118300	1983700	0	0	0	0	0	0	0	0	0	8102000	6118300	1983700	13273	4668	12583	80886;80887	109219;109220;109221	109220			3	
EPLVDVVDPK	1	Unmodified	1109.5968	0.5968403	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	3	2	1	59.007	54.551	2	4.2933E-05	48996	160511_QHF_FH_JSI11i_1	94.302	60.506			0.88964	0.85602	20.832	7	0	Median	0.93908	0.77173	NaN	1	0	Median	0.68516	0.80755	29.109	3	0	Median	0.96288	0.92975	11.685	2	0	Median	0.9091	0.9768	NaN	1	0	Median	1751500000	914280000	837270000	461100000	227430000	233670000	404550000	230110000	174440000	504710000	258590000	246110000	381190000	198150000	183040000	13274	4325	12584	80888;80889;80890;80891;80892;80893;80894	109222;109223;109224;109225;109226;109227;109228;109229;109230;109231;109232;109233;109234	109223			13	
EPLYVGVDDDK	1	Unmodified	1248.5874	0.58739782	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.465	40.845	2	0.0017836	36797	160511_QHF_FH_JSI11i_1	65.719	31.844			1.4511	1.5151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4511	1.5151	NaN	1	1	Median	165220000	66100000	99116000	0	0	0	0	0	0	0	0	0	165220000	66100000	99116000	13275	5042	12585	80895;80896	109235;109236	109235			2	
EPMKDDITGEPLIR	1	Unmodified	1612.8131	0.81305744	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	3	3	50.823	49.974	2;3	0.00061601	43735	160511_QHF_FH_JSI9i_2	63.037	53.258			0.98232	1.043	8.291	11	1	Median	1.2439	1.0573	16.616	2	0	Median	0.86407	1.043	6.8824	3	0	Plateau	0.98232	0.99843	9.9588	3	1	Plateau	0.95171	1.0762	6.9708	3	0	Median	1455400000	701210000	754170000	225320000	105110000	120210000	327020000	169710000	157310000	539140000	252640000	286500000	363900000	173760000	190140000	13276	1835	12586	80897;80898;80899;80900;80901;80902;80903;80904;80905;80906;80907	109237;109238;109239;109240;109241;109242;109243;109244;109245;109246;109247;109248;109249;109250;109251	109245			15	
EPMQTGIK	1	Unmodified	902.45315	0.45315295	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.682	14.228	2	0.0074934	11761	160511_QHF_FH_JSI10i_1	66.073	29.888			0.89907	0.91317	4.1098	4	0	Median	1.1315	0.93508	NaN	1	0	Median	0.7564	0.89177	NaN	1	0	Median	0.89068	0.86826	NaN	1	0	Median	0.90755	0.94847	NaN	1	0	Median	2712400000	1494000000	1218400000	485010000	260840000	224170000	940560000	569260000	371300000	823080000	445940000	377140000	463750000	217980000	245770000	13277	1263	12587	80908;80909;80910;80911	109252;109253;109254;109255;109256	109254			5	
EPNPPIDEVISTPGVVAR	0	Unmodified	1888.9894	0.9894419	1767	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	75.321	74.784	2;3	1.3657E-06	66335	160511_QHF_FH_JSI9i_1	99.705	91.601			1.0558	1.007	13.532	8	3	Median	1.2399	1.011	9.6042	2	0	Median	0.80755	0.93951	NaN	1	0	Median	1.1634	1.1279	28.359	2	1	Median	0.95466	1.0082	8.0923	3	2	Plateau	373890000	178330000	195560000	103710000	48124000	55588000	48510000	24441000	24069000	105480000	45098000	60377000	116190000	60667000	55525000	13278	1767	12588	80912;80913;80914;80915;80916;80917;80918;80919	109257;109258;109259;109260;109261;109262;109263;109264;109265;109266;109267;109268;109269;109270;109271;109272;109273	109269			17	
EPNPQGESHPPLNLAFLDILSEFSSK	1	Unmodified	2865.4185	0.41848859	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.53	102.54	3	2.6683E-12	89308	160511_QHF_FH_JSI12i_3	81.001	74.497			0.64181	0.64749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64181	0.64749	NaN	1	1	Median	95227000	72456000	22771000	0	0	0	0	0	0	0	0	0	95227000	72456000	22771000	13279	3521	12589	80920	109274	109274			1	
EPNSENVDISSGGGVTGWK	1	Unmodified	1931.8861	0.88609904	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	1	2	53.722	52.962	2;3	1.7978E-15	47036	160511_QHF_FH_JSI9i_1	156.17	134.78			1.0291	1.0328	14.863	8	4	Median	1.2223	1.0423	14.71	3	2	Plateau	0.96712	1.1522	13.716	2	0	Median	1.0494	1.0235	NaN	1	0	Median	0.98468	1.0379	7.1442	2	2	Median	405210000	190630000	214580000	117420000	55240000	62178000	110000000	52742000	57256000	58127000	25949000	32178000	119670000	56700000	62968000	13280	1933	12590	80921;80922;80923;80924;80925;80926;80927;80928	109275;109276;109277;109278;109279;109280;109281;109282;109283	109283			9	
EPPAPAQQLQPQPVAVQGPEPARVEK	1	Unmodified	2760.4559	0.45587715	4846	Q9HC07	TMEM165	Transmembrane protein 165	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	55.361	54.703	3	1.1725E-13	49859	160511_QHF_FH_JSI12i_1	86.791	76.533			1.2005	1.1878	11.589	4	0	Median	1.3266	1.0964	NaN	1	0	Median	1.0864	1.2885	NaN	1	0	Median	1.3414	1.2869	NaN	1	0	Median	0.96261	1.0243	NaN	1	0	Median	156910000	73143000	83771000	44052000	18880000	25172000	45432000	20965000	24467000	31199000	16395000	14804000	36232000	16904000	19328000	13281	4846	12591	80929;80930;80931;80932	109284;109285;109286;109287;109288;109289;109290	109284			7	
EPPKPEQVESR	1	Unmodified	1294.6517	0.65172941	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.25	6	6	1				1			4	3	4	3	12.867	11.764	2;3	0.00056938	9706	160511_QHF_FH_JSI9i_2	55.452	47.147			0.93193	0.95904	20.863	14	2	Median	1.1028	0.94472	23.676	4	0	Median	0.84486	1.0041	19.725	3	0	Median	0.93193	0.93157	10.674	4	0	Median	0.85464	0.90317	29.328	3	2	Median	2937700000	1458300000	1479400000	640070000	298180000	341880000	604240000	333830000	270410000	995110000	488310000	506800000	698300000	338000000	360300000	13282	434	12592	80933;80934;80935;80936;80937;80938;80939;80940;80941;80942;80943;80944;80945;80946	109291;109292;109293;109294;109295;109296;109297;109298;109299;109300;109301;109302;109303;109304	109300			14	
EPPLLLGVLHPNTK	1	Unmodified	1526.8821	0.8820637	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.316	75.174	3	0.0018168	65151	160511_QHF_FH_JSI12i_3	42.338	30.361			0.89324	0.89516	22.412	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0924	1.0489	NaN	1	0	Median	0.73038	0.76397	NaN	1	0	Median	112800000	63030000	49772000	0	0	0	0	0	0	54818000	30923000	23895000	57984000	32108000	25876000	13283	4877	12593	80947;80948	109305;109306;109307	109307			3	
EPPLSLTIHLTSPVVR	0	Unmodified	1758.004	0.003969751	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	81.287	80.903	3	2.8652E-05	70221	160511_QHF_FH_JSI12i_3	83.106	75.697			0.73219	1.0667	34.309	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.0324	1.267	NaN	1	0	Median	1.3413	1.2726	51.259	2	2	Median	0.87923	0.89804	NaN	1	0	Median	162780000	72236000	90540000	0	0	0	20126000	10228000	9898000	73734000	30933000	42801000	68916000	31075000	37841000	13284	2325	12594	80949;80950;80951;80952	109308;109309;109310;109311	109311			3	
EPPPGMFVVPDTVDMTK	1	Unmodified	1858.8845	0.88450782	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	86.692	86.135	3	0.00010092	78391	160511_QHF_FH_JSI11i_1	65.231	53.791			1.3157	1.1195	20.182	3	0	Plateau	1.5176	1.2118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1406	1.1195	NaN	1	0	Median	1.5331	1.6409	NaN	1	0	Median	121940000	52408000	69531000	41320000	16660000	24659000	0	0	0	44205000	19520000	24685000	36414000	16228000	20187000	13285	4775	12595	80953;80954;80955	109312;109313;109314;109315;109316	109313			5	
EPPQGAHFLSR	0	Unmodified	1237.6204	0.62036971	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	3	1		27.686	26.705	2;3	0.00081227	22095	160511_QHF_FH_JSI10i_3	51.463	44.085			1.0524	0.97584	46.835	5	0	Median	1.4469	1.1634	NaN	1	0	Median	0.80452	0.9366	63.578	3	0	Median	1.0524	0.97584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	564800000	244030000	320770000	54487000	19406000	35081000	398280000	167100000	231180000	112030000	57529000	54504000	0	0	0	13286	763	12596	80956;80957;80958;80959;80960	109317;109318;109319;109320;109321;109322	109320			6	
EPPTDVTPTFLTTGVLSTLR	0	Unmodified	2144.1365	0.13650007	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.12	0.331	7	1								2	2	2	2	101.56	101.45	2;3	4.2823E-10	92176	160511_QHF_FH_JSI11i_1	113.54	101.51			1.1085	1.0779	8.7592	8	2	Median	1.4331	1.1758	8.087	2	1	Median	0.85874	1.0228	2.5017	2	0	Median	1.1265	1.0937	6.2537	2	0	Median	1.0361	1.0516	14.375	2	1	Median	1807900000	874340000	933580000	150910000	53137000	97773000	743690000	400390000	343300000	558070000	258240000	299830000	355260000	162580000	192690000	13287	1693	12597	80961;80962;80963;80964;80965;80966;80967;80968	109323;109324;109325;109326;109327	109324			5	
EPPTTLLWVQYFLAQHFDK	1	Unmodified	2332.1892	0.18920434	3068	Q6N069	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	97.935	89.316	3	1.2287E-25	53546	160513_QHF_FH_JSI10Kac_6	154.55	136.02			1.0578	1.0307	8.6333	5	3	Median	1.1614	0.99442	NaN	1	0	Median	1.0284	1.2252	NaN	1	0	Median	1.0752	1.0138	2.3496	2	2	Median	1.0244	1.0764	NaN	1	1	Median	1187000000	567390000	619650000	229100000	106450000	122650000	412410000	222600000	189810000	316340000	141350000	174980000	229200000	96992000	132210000	13288	3068	12598	80969;80970;80971;80972;80973	109328;109329;109330;109331;109332;109333;109334	109334			7	
EPPYGADVLR	0	Unmodified	1115.5611	0.56112349	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.087	42.431	2	0.0010847	38637	160511_QHF_FH_JSI12i_1	67.993	34.196			1.0415	0.97753	13.484	4	0	Linear	1.648	1.3358	NaN	1	0	Median	0.82878	1.0066	NaN	1	0	Median	1.0382	1.0006	NaN	1	0	Median	1.0448	1.1114	NaN	1	0	Median	1013600000	470040000	543560000	181380000	63224000	118150000	274290000	136850000	137440000	305750000	158470000	147290000	252170000	111500000	140670000	13289	4983	12599	80974;80975;80976;80977	109335;109336;109337;109338;109339;109340	109338			6	
EPQDTYHYLPFSLPHR	0	Unmodified	1998.9588	0.95881047	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		67.896	67.896	4	0.010781	60450	160511_QHF_FH_JSI11i_3	42.813	38.545			1.0315	0.97388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0315	0.97388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57537000	29410000	28127000	0	0	0	0	0	0	57537000	29410000	28127000	0	0	0	13290	981	12600	80978	109341	109341			0	
EPQPEVAAAEEEK	1	Unmodified	1425.6624	0.66235368	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	3.26	7	2			1					2	4	2	2	26.601	25.123	2;3	6.9109E-06	21963	160511_QHF_FH_JSI11i_1	136.3	98.955			1.0139	1.0365	37.969	10	2	Median	0.97619	0.80138	27.758	2	1	Median	1.0827	1.3181	28.879	4	0	Median	1.6027	1.5661	60.078	2	1	Median	0.95727	1.0028	1.5332	2	0	Median	1720100000	875940000	844150000	533460000	263810000	269650000	431580000	222460000	209120000	281950000	132340000	149610000	473110000	257330000	215770000	13291	289	12601	80979;80980;80981;80982;80983;80984;80985;80986;80987;80988	109342;109343;109344;109345;109346;109347;109348;109349;109350;109351;109352;109353;109354;109355;109356	109343			14	
EPRPFPK	1	Unmodified	869.47594	0.4759373	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.717	11.955	3	0.031954	9437	160511_QHF_FH_JSI10i_3	30.42	12.571			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13292	815	12602	80989	109357	109357			1	
EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR	0	Unmodified	2935.4464	0.44643467	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.517	59.024	3	4.443E-10	53401	160511_QHF_FH_JSI11i_1	64.289	52.209			0.92533	0.99203	21.332	3	1	Median	NaN	NaN	NaN	0	0	Median	0.72585	0.86094	NaN	1	0	Median	1.3753	1.3095	NaN	1	1	Median	0.92533	0.99203	NaN	1	0	Median	120340000	59175000	61167000	0	0	0	36536000	20817000	15719000	39748000	17783000	21965000	44059000	20575000	23484000	13293	3766	12603	80990;80991;80992	109358;109359;109360;109361;109362	109358			5	
EPSATPPISNLTK	1	Unmodified	1353.714	0.71399532	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.714	45.033	2	0.0018654	40433	160511_QHF_FH_JSI10i_1	59.84	46.147			1.2483	1.0247	5.9162	3	0	Plateau	1.2483	1.0247	NaN	1	0	Median	0.92178	1.0968	NaN	1	0	Median	1.0102	0.97482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	246840000	116980000	129850000	90084000	41631000	48453000	76582000	39209000	37374000	80171000	36143000	44028000	0	0	0	13294	1360	12604	80993;80994;80995	109363;109364	109363			2	
EPSEEPLPMETEEEDPKEEPIK	2	Unmodified	2581.1629	0.16291033	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.138	54.479	3	1.1982E-06	49585	160511_QHF_FH_JSI12i_1	75.064	71.187			0.93862	0.93084	6.5163	4	0	Median	1.0359	0.84542	NaN	1	0	Median	0.78813	0.93094	NaN	1	0	Median	1.0002	0.98984	NaN	1	0	Median	0.88086	0.93073	NaN	1	0	Median	468460000	243100000	225350000	102550000	54303000	48243000	144570000	79007000	65562000	112370000	50875000	61493000	108970000	58918000	50053000	13295	203	12605	80996;80997;80998;80999	109365;109366;109367;109368	109366			4	
EPSEVPTPK	1	Unmodified	982.49713	0.49712625	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.483	17.865	2	0.00093493	15156	160511_QHF_FH_JSI10i_1	79.906	59.624			0.90473	0.94477	9.2167	3	1	Median	0.97313	0.80883	NaN	1	0	Median	0.79285	0.94477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90473	0.95261	NaN	1	1	Median	704350000	390470000	313880000	214130000	106250000	107880000	263010000	168710000	94296000	0	0	0	227220000	115520000	111700000	13296	1109	12606	81000;81001;81002	109369;109370;109371;109372	109370			4	
EPSFDWK	1	Unmodified	907.40758	0.40758296	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	44.32	43.509	2	0.027514	37103	160511_QHF_FH_JSI12i_2	53.554	33.918			0.99807	1.0612	4.5019	5	0	Median	1.2095	1.0056	NaN	1	0	Median	0.91056	1.0593	NaN	1	0	Median	1.1831	1.1361	NaN	1	0	Median	0.99423	1.0775	2.1471	2	0	Median	420970000	202410000	218570000	45418000	19894000	25524000	115130000	56523000	58610000	105580000	52657000	52928000	154840000	73331000	81506000	13297	2094	12607	81003;81004;81005;81006;81007	109373;109374;109375;109376	109374			4	
EPSFIVVHYAGPVR	0	Unmodified	1569.8304	0.83036248	4103	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		16	0									3	1	1	1		69.784	61.184	3	0.00040886	33244	160513_QHF_FH_JSI11Kac_6	65.805	53.89			1.1955	1.0175	47.244	3	0	Median	1.1955	1.0175	NaN	1	0	Median	1.3469	1.5823	NaN	1	0	Median	0.62638	0.61549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66910000	31143000	35767000	17284000	8517000	8767500	29459000	10135000	19324000	20166000	12491000	7675100	0	0	0	13298	4103	12608	81008;81009;81010	109377;109378	109377			2	
EPSGPSELIPSSTFSAHNR	0	Unmodified	2011.9599	0.95993268	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.717	55.475	3	0.00102	47658	160511_QHF_FH_JSI12i_3	40.432	36.128			0.43906	0.45413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43906	0.45413	NaN	1	1	Median	17238000	12526000	4712200	0	0	0	0	0	0	0	0	0	17238000	12526000	4712200	13299	4085	12609	81011	109379	109379			1	
EPSGVAGVDGMLGR	0	Unmodified	1343.6503	0.65034921	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.509	52.844	2	0.0046662	47966	160511_QHF_FH_JSI12i_1	54.486	29.977			0.70811	0.72438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70811	0.72438	NaN	1	0	Median	57585000	34174000	23411000	0	0	0	0	0	0	0	0	0	57585000	34174000	23411000	13300	3720	12610	81012	109380	109380			1	
EPSNPER	0	Unmodified	827.37735	0.37734547	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.7209	4.4069	2	0.035999	2296	160511_QHF_FH_JSI12i_1	49.358	35.201			1.0404	1.0539	1.1599	4	0	Median	1.3097	1.0615	NaN	1	0	Median	0.85813	1.0358	NaN	1	0	Median	1.0808	1.0606	NaN	1	0	Median	1.0014	1.0473	NaN	1	0	Median	937920000	476130000	461780000	174620000	68020000	106600000	270270000	148280000	121990000	253240000	132380000	120860000	239780000	127450000	112330000	13301	1237	12611	81013;81014;81015;81016	109381;109382	109382			2	
EPSPPIDEVINTPR	0	Unmodified	1562.794	0.79403656	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.032	60.391	2	0.00038232	53695	160511_QHF_FH_JSI9i_1	76.522	55.652			1.0302	1.0146	2.5334	4	0	Median	1.2448	1.019	NaN	1	0	Median	0.83402	0.992	NaN	1	0	Median	1.072	1.0538	NaN	1	0	Median	0.98995	1.0101	NaN	1	0	Median	753790000	371170000	382620000	185450000	79289000	106160000	190060000	106000000	84062000	192310000	94889000	97423000	185960000	90991000	94973000	13302	439	12612	81017;81018;81019;81020	109383;109384;109385;109386;109387;109388;109389	109389			7	
EPSSQLFSKPEVIK	2	Unmodified	1587.8508	0.85082315	4752	Q9H6T0	ESRP2	Epithelial splicing regulatory protein 2	yes	yes	0	0	0	1	By matching	By matching		By MS/MS	2.33	0.471		2	1							1	1		1	51.352	50.612	3	0.025028	43253	160511_QHF_FH_JSI12i_3	35.659	23.682			0.97826	1.0136	3.5741	3	0	Plateau	1.074	0.94414	NaN	1	0	Median	0.83068	0.98518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97826	1.0136	NaN	1	0	Median	191900000	85686000	106210000	28130000	7641900	20488000	49715000	25157000	24558000	0	0	0	114060000	52887000	61168000	13303	4752	12613	81021;81022;81023	109390	109390			1	
EPSVQEATSTSDILK	1	Unmodified	1603.7941	0.79409613	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.07	51.398	2	3.2998E-06	46634	160511_QHF_FH_JSI11i_1	127.17	106.4			1.0041	0.96731	4.9214	4	0	Linear	1.1543	0.94033	NaN	1	0	Median	0.87675	1.042	NaN	1	0	Median	1.0316	0.9956	NaN	1	0	Median	0.97726	1.044	NaN	1	0	Median	296740000	141550000	155200000	81411000	36154000	45257000	74721000	40086000	34634000	80181000	37406000	42775000	60430000	27901000	32529000	13304	3463	12614	81024;81025;81026;81027	109391;109392;109393;109394;109395;109396;109397;109398;109399;109400;109401	109392			11	
EPTPSIASDISLPIATQELR	0	Unmodified	2137.1267	0.12666366	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	95.605	95.432	2;3	6.4008E-16	86742	160511_QHF_FH_JSI12i_1	160.27	122.25			0.7576	0.76909	21.731	5	4	Median	NaN	NaN	NaN	0	0	Median	0.81801	0.96091	31.489	2	1	Median	0.7576	0.7354	NaN	1	1	Median	0.86252	0.86231	20.397	2	2	Median	78969000	41085000	37884000	0	0	0	32535000	19402000	13133000	13273000	7831600	5441500	33161000	13852000	19310000	13305	6	12615	81028;81029;81030;81031;81032;81033	109402;109403;109404;109405;109406;109407;109408	109405			7	
EPTSSEQGGLEGSGSAAGEGKPALSEEERQEQTK	2	Unmodified	3459.5874	0.58735742	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	32.479	31.809	4	7.1682E-16	28546	160511_QHF_FH_JSI11i_1	76.97	71.31			0.70735	0.68741	10.304	5	2	Median	0.96386	0.7853	NaN	1	0	Median	0.53497	0.64237	4.0787	2	2	Median	0.70735	0.68741	NaN	1	0	Median	0.76023	0.7838	NaN	1	0	Median	337290000	182100000	155190000	48177000	25711000	22466000	121040000	61425000	59612000	87636000	44200000	43436000	80440000	50760000	29680000	13306	2215	12616	81034;81035;81036;81037;81038	109409;109410;109411;109412;109413;109414	109409			6	
EPVDFEQWIEK	1	Unmodified	1418.6718	0.67179615	5649	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	2	3	83.081	82.454	2	2.8238E-06	75266	160511_QHF_FH_JSI12i_1	112.13	93.035			0.92497	0.91669	16.741	11	7	Median	1.0264	0.88524	19.415	3	2	Median	0.82192	0.98606	14.3	3	2	Median	0.90672	0.89545	18.97	2	1	Median	0.77822	0.8083	15.349	3	2	Plateau	3143900000	1609600000	1534300000	842830000	418570000	424250000	1158400000	563160000	595200000	542880000	268680000	274200000	599830000	359180000	240650000	13307	5649	12617	81039;81040;81041;81042;81043;81044;81045;81046;81047;81048;81049	109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429	109421			15	
EPVEAAPAAEPVPAST	0	Unmodified	1534.7515	0.75150304	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11	0				2								1	1	54.114	44.747	2	0.0017766	18320	160513_QHF_FH_JSI12Kacf_1	66.595	60.063			1.1124	1.1334	2.0708	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1525	1.1169	NaN	1	0	Median	1.0738	1.1501	NaN	1	0	Median	5159800	2486200	2673600	0	0	0	0	0	0	2973700	1467100	1506600	2186100	1019100	1167000	13308	2759	12618	81050;81051	109430;109431;109432;109433	109431			4	
EPVETAVDNNSK	1	Unmodified	1301.6099	0.60992418	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.722	15.264	2	6.8269E-07	12503	160511_QHF_FH_JSI9i_1	147.91	127.04			0.89723	1.0455	17.646	4	0	Linear	0.98453	0.80081	NaN	1	0	Median	0.82465	0.94614	NaN	1	0	Median	0.73132	0.70485	NaN	1	0	Median	0.97618	1.0498	NaN	1	0	Median	1209700000	716810000	492920000	290370000	168580000	121790000	320490000	199510000	120980000	214900000	142710000	72189000	383970000	206010000	177960000	13309	3042	12619	81052;81053;81054;81055	109434;109435;109436;109437	109437			4	
EPVPSALPPSLIPPSK	1	Unmodified	1627.9185	0.91850879	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	1	0	3									1	1		1	75.423	74.879	3	0.00042506	67849	160511_QHF_FH_JSI10i_1	46.156	34.241			1.2719	1.0401	18.128	3	0	Plateau	1.2719	1.0401	NaN	1	0	Median	1.0963	1.2557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88141	0.87389	NaN	1	0	Median	44749000	21090000	23659000	17165000	7188600	9976500	13985000	7726100	6259200	0	0	0	13599000	6175500	7423100	13310	5230	12620	81056;81057;81058	109438	109438			1	
EPVVVETVEEK	1	Unmodified	1256.65	0.64999808	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				41.306	40.093	2	0.015641	35475	160511_QHF_FH_JSI9i_1	50.791	27.363			0.91339	0.73614	53.966	2	2	Median	0.91339	0.73614	53.966	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42847000	25892000	16955000	42847000	25892000	16955000	0	0	0	0	0	0	0	0	0	13311	3549	12621	81059;81060	109439;109440	109439			2	
EPWLLPSQHNDIIR	0	Unmodified	1716.8948	0.89475365	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2								2	3	3	68.335	67.705	2;3	3.9861E-05	58524	160511_QHF_FH_JSI12i_2	78.908	42.948			0.85214	0.95358	19.738	7	4	Median	NaN	NaN	NaN	0	0	Median	0.6949	0.86375	13.993	2	2	Median	1.0397	1.0024	22.451	3	1	Plateau	1.1456	1.167	10.112	2	1	Median	693230000	348400000	344830000	0	0	0	248980000	131370000	117610000	347740000	167460000	180280000	96513000	49573000	46940000	13312	2569	12622	81061;81062;81063;81064;81065;81066;81067;81068	109441;109442;109443;109444;109445;109446;109447;109448;109449;109450;109451	109443			11	
EQAALSQANGIK	1	Unmodified	1228.6412	0.64116473	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	24.815	24.171	2	0.0031775	21131	160511_QHF_FH_JSI11i_1	67.153	33.928			1.3967	1.1725	12.043	3	3	Plateau	1.3354	1.1102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4166	1.3979	NaN	1	1	Median	1.0991	1.1725	NaN	1	1	Median	78344000	30025000	48319000	27288000	9639800	17649000	0	0	0	27878000	9302400	18576000	23177000	11083000	12094000	13313	682	12623	81069;81070;81071	109452;109453;109454	109452			3	
EQADFALEALAK	1	Unmodified	1304.6612	0.66123147	3263	Q7Z406	MYH14	Myosin-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.601	68.034	2	6.4429E-16	61655	160511_QHF_FH_JSI10i_1	186.46	0			0.90959	0.94853	7.1252	4	1	Median	1.1338	0.93852	NaN	1	0	Median	0.89425	1.0572	NaN	1	0	Median	0.92115	0.89193	NaN	1	0	Median	0.89816	0.95864	NaN	1	1	Median	2674800000	1340800000	1334000000	529690000	249320000	280370000	826830000	409620000	417210000	649020000	328920000	320100000	669290000	352990000	316300000	13314	3263	12624	81072;81073;81074;81075	109455;109456;109457;109458;109459;109460;109461;109462;109463;109464;109465;109466	109462			12	
EQAEEERYFR	0	Unmodified	1355.6106	0.61059288	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	21.145	20.842	2;3	5.5514E-10	17498	160511_QHF_FH_JSI11i_3	142.83	120.74			1.2143	1.1469	16.282	7	0	Median	1.648	1.4339	NaN	1	0	Median	0.84508	1.0208	NaN	1	0	Median	1.2249	1.2258	4.8322	3	0	Median	0.92369	0.93905	6.9995	2	0	Median	916480000	451440000	465040000	56744000	24621000	32123000	57213000	28505000	28709000	452030000	209740000	242290000	350490000	188570000	161920000	13315	5331	12625	81076;81077;81078;81079;81080;81081;81082	109467;109468;109469;109470;109471;109472;109473;109474;109475;109476;109477	109467			11	
EQAELEAAR	0	Unmodified	1015.4934	0.49343786	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4	5.2	3					1				1	1	2		16.801	12.598	2	0.00022581	11146	160511_QHF_FH_JSI10i_1	89.171	60.659			1.1311	1.008	27.693	2	0	Median	1.0091	0.82875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2678	1.226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125750000	61557000	64189000	122650000	60351000	62301000	0	0	0	3093800	1206000	1887900	0	0	0	13316	2636	12626	81083;81084;81085;81086	109478;109479;109480;109481	109480			4	
EQAELTGLR	0	Unmodified	1015.5298	0.52982336	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.33	6.13	2						1				1	1	1	31.168	27.727	2	0.01961	24538	160511_QHF_FH_JSI10i_1	50.473	24.534			0.66378	0.70859	47.599	3	3	Median	NaN	NaN	NaN	0	0	Median	0.56392	0.66095	NaN	1	1	Median	1.5383	1.5573	NaN	1	1	Median	0.66378	0.70859	NaN	1	1	Median	526230000	392070000	134150000	0	0	0	236270000	182300000	53967000	4155500	1434100	2721400	285800000	208340000	77466000	13317	4114	12627	81087;81088;81089	109482;109483;109484	109483			3	
EQAIGEYEDLRAENQK	1	Unmodified	1891.8912	0.89118442	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	1	3	38.232	37.524	3	3.0711E-05	32658	160511_QHF_FH_JSI9i_2	80.609	65.687			0.88466	0.93015	36.271	7	1	Median	1.1513	0.99982	NaN	1	0	Median	1.1076	1.3312	28.397	2	0	Median	0.92173	0.93015	NaN	1	0	Median	0.576	0.60164	16.986	3	1	Median	514090000	267100000	246990000	78102000	34759000	43343000	161160000	81478000	79684000	133320000	72919000	60404000	141500000	77949000	63556000	13318	8	12628	81090;81091;81092;81093;81094;81095;81096	109485;109486;109487;109488;109489;109490;109491;109492;109493;109494;109495	109491			10	
EQALQDLQQQR	0	Unmodified	1355.6793	0.67934115	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			29.994	29.194	2	0.00014647	25876	160511_QHF_FH_JSI10i_1	94.465	76.601			0.66119	0.65239	7.1467	2	2	Median	0.74103	0.62024	NaN	1	1	Median	0.58995	0.68621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79328000	40698000	38629000	38051000	18107000	19944000	41276000	22591000	18685000	0	0	0	0	0	0	13319	2627	12629	81097;81098	109496;109497	109496			2	
EQALQLAQK	1	Unmodified	1027.5662	0.56620887	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	1	2	35.017	26.512	2	1.2121E-05	23399	160511_QHF_FH_JSI12i_1	103.83	41.871			0.54128	0.58848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54128	0.58848	NaN	1	1	Median	5879200	4309400	1569800	0	0	0	0	0	0	0	0	0	5879200	4309400	1569800	13320	5223	12630	81099;81100;81101;81102	109498;109499;109500;109501	109499			4	
EQALSTLQLEHTSTQALVSELLPAK	1	Unmodified	2706.444	0.44397506	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.89	100.77	3	1.6045E-125	88578	160511_QHF_FH_JSI9i_2	268.97	235.51			0.85866	0.8957	6.6962	4	1	Median	1.0509	0.88803	NaN	1	0	Median	0.64755	0.79827	NaN	1	1	Median	0.91871	0.9311	NaN	1	0	Median	0.80253	0.90343	NaN	1	0	Median	361690000	196130000	165560000	53930000	23824000	30106000	46401000	30986000	15415000	111210000	64543000	46665000	150160000	76781000	73375000	13321	2587	12631	81103;81104;81105;81106	109502;109503;109504;109505;109506;109507;109508	109504			7	
EQANAVSEAVVSSVNTVATK	1	Unmodified	2003.0171	0.017113212	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.891	8		3							4	3	2	2	71.739	71.024	2;3	4.0073E-118	64209	160511_QHF_FH_JSI10i_1	272.24	248.49			1.0682	0.96271	22.067	10	1	Median	1.0902	0.89447	11.315	3	0	Plateau	0.77701	0.92518	21.715	3	1	Median	1.2555	1.2154	6.3677	2	0	Median	1.1302	1.1854	0.37526	2	0	Median	3668900000	1662600000	2006300000	791040000	364870000	426170000	1107700000	684580000	423130000	863720000	310460000	553260000	906460000	302750000	603710000	13322	599	12632	81107;81108;81109;81110;81111;81112;81113;81114;81115;81116;81117	109509;109510;109511;109512;109513;109514;109515;109516;109517;109518;109519;109520;109521;109522;109523;109524;109525	109519			17	
EQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGK	1	Unmodified	3764.6595	0.65953609	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		80.146	79.805	3	2.0561E-15	72671	160511_QHF_FH_JSI11i_1	77.766	72.659			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13323	648	12633	81118	109526	109526			1	
EQAQQIELK	1	Unmodified	1085.5717	0.57168818	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.654	23.316	2	0.010365	20267	160511_QHF_FH_JSI11i_1	50.04	0			0.78749	0.77286	26.536	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0055	0.93238	NaN	1	0	Median	0.61677	0.64063	NaN	1	0	Median	132640000	71760000	60881000	0	0	0	0	0	0	68410000	31819000	36591000	64230000	39941000	24289000	13324	2900	12634	81119;81120;81121	109527;109528	109527			2	
EQCEQLEK	1	Unmodified	1062.4652	0.4651742	2	A0A096LP55;P07919	UQCRHL;UQCRH	Cytochrome b-c1 complex subunit 6;Cytochrome b-c1 complex subunit 6, mitochondrial	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	10.253	8.2363	2	0.00092883	7141	160511_QHF_FH_JSI12i_1	96.331	66.955			0.82915	0.84782	10.088	4	1	Median	NaN	NaN	NaN	0	0	Median	0.69328	0.81374	NaN	1	1	Median	0.84219	0.81572	11.26	2	0	Median	0.88749	0.95101	NaN	1	0	Median	883230000	498810000	384430000	0	0	0	302910000	164780000	138130000	302180000	183190000	119000000	278140000	150840000	127300000	13325	2	12635	81122;81123;81124;81125	109529;109530;109531	109529			3	
EQDAVDQVK	1	Unmodified	1030.4931	0.49310351	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	1	2	3	13.932	11.619	2	0.0004647	9886	160511_QHF_FH_JSI11i_1	90.108	45.661			1.3222	1.4507	33.658	7	5	Median	1.8222	1.5213	NaN	1	1	Median	1.0861	1.2871	NaN	1	1	Median	1.4275	1.3789	43.914	2	1	Median	1.3222	1.4507	48.603	3	2	Median	477390000	222230000	255160000	96638000	35154000	61484000	94735000	48216000	46519000	103690000	45129000	58558000	182330000	93727000	88598000	13326	2494	12636	81126;81127;81128;81129;81130;81131;81132	109532;109533;109534;109535;109536;109537	109532			6	
EQDDLLVLLADQDQK	1	Unmodified	1741.8734	0.87340909	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	90.869	90.809	3	3.9708E-06	82567	160511_QHF_FH_JSI12i_1	85.493	66.418			0.80558	0.90235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80558	0.90235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33267000	19584000	13683000	0	0	0	33267000	19584000	13683000	0	0	0	0	0	0	13327	446	12637	81133;81134	109538;109539;109540	109538			3	
EQDEAYR	0	Unmodified	909.38282	0.38282478	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.7904	5.4444	2	0.01788	3457	160511_QHF_FH_JSI12i_1	54.776	13.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13328	5442	12638	81135	109541	109541			1	
EQDIYLPIANVAR	0	Unmodified	1500.7936	0.79364262	1255	P25208	NFYB	Nuclear transcription factor Y subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	76.836	76.514	2	0.00079189	69633	160511_QHF_FH_JSI11i_1	79.741	55.359			0.65063	0.62466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65063	0.62466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32133000	21179000	10954000	0	0	0	0	0	0	32133000	21179000	10954000	0	0	0	13329	1255	12639	81136;81137	109542;109543	109542			2	
EQDLPLAEAVRPK	1	Unmodified	1464.7936	0.79364262	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	50.675	49.915	3	4.019E-05	42959	160511_QHF_FH_JSI11i_2	82.102	69.742			0.52919	0.54613	53.406	5	1	Median	0.3583	0.30395	NaN	1	1	Median	0.46759	0.54613	NaN	1	0	Median	0.68801	0.65958	37.995	2	0	Median	1.0893	1.226	NaN	1	0	Median	454610000	289060000	165550000	139890000	105420000	34473000	41690000	30662000	11028000	179740000	102220000	77515000	93288000	50753000	42535000	13330	3961	12640	81138;81139;81140;81141;81142	109544;109545;109546;109547;109548;109549	109548			6	
EQDLQLEELRQQVSTLK	1	Unmodified	2056.08	0.08004782	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	73.243	72.713	3	0.00048115	64499	160511_QHF_FH_JSI10i_2	56.407	42.752			0.80484	0.89621	8.5155	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77689	0.95183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83379	0.84383	NaN	1	0	Median	68445000	36384000	32061000	0	0	0	33256000	17977000	15279000	0	0	0	35189000	18407000	16782000	13331	446	12641	81143;81144	109550;109551	109550			2	
EQDNQFK	1	Unmodified	907.40356	0.40356022	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.2484	6.8962	2	0.023935	4841	160511_QHF_FH_JSI12i_1	49.358	18.129			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13332	3586	12642	81145	109552	109552			1	
EQDQRPLHPVANPHAEISTK	1	Unmodified	2266.1454	0.14544204	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.16	25.851	4	0.029339	21414	160511_QHF_FH_JSI10i_3	29.84	19.882			1.3055	1.4913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3055	1.4913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23646000	7469400	16176000	0	0	0	23646000	7469400	16176000	0	0	0	0	0	0	13333	5095	12643	81146	109553	109553			1	
EQDQTLLLK	1	Unmodified	1086.5921	0.59208927	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		39.036	38.695	2	0.010905	34760	160511_QHF_FH_JSI11i_1	49.418	23.859			0.98573	1.0285	29.8	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73239	0.83305	NaN	1	0	Median	1.3267	1.2697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56862000	28093000	28769000	0	0	0	24460000	12894000	11565000	32402000	15199000	17204000	0	0	0	13334	3266	12644	81147;81148	109554;109555	109554			2	
EQDSESQTLDK	1	Unmodified	1278.5576	0.55755426	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	10.306	9.974	2	3.8968E-06	7616	160511_QHF_FH_JSI11i_1	122.7	71.633			0.90111	0.94324	28.769	5	3	Median	1.0989	0.90516	NaN	1	0	Median	0.80337	0.95493	NaN	1	1	Median	0.93107	0.90287	57.279	2	2	Median	0.90111	0.94324	NaN	1	0	Median	287300000	153430000	133870000	62590000	29526000	33064000	63469000	35932000	27537000	120200000	64410000	55785000	41043000	23560000	17484000	13335	2575	12645	81149;81150;81151;81152;81153	109556;109557;109558;109559;109560;109561;109562	109556			7	
EQDVYICDYR	0	Unmodified	1359.5765	0.57651556	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	44.859	44.325	2	0.01153	39915	160511_QHF_FH_JSI10i_1	46.334	41.639			0.77893	0.85798	11.821	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80361	0.93278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.755	0.78918	NaN	1	0	Median	235150000	130500000	104650000	0	0	0	71073000	42177000	28896000	0	0	0	164080000	88326000	75751000	13336	4945	12646	81154;81155	109563;109564;109565	109565			3	
EQEAAMEIQEPAANK	1	Unmodified	1657.7618	0.76175015	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	36.26	35.668	2	3.9711E-21	31849	160511_QHF_FH_JSI10i_1	136.24	119.57			0.92527	0.94324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92527	0.94324	NaN	1	0	Median	32354000	15274000	17080000	0	0	0	0	0	0	0	0	0	32354000	15274000	17080000	13337	3849	12647	81156;81157	109566;109567;109568	109568			3	
EQEAGLLQFLR	0	Unmodified	1302.6932	0.6932003	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By matching		1.5	0.5	1	1									1	1		85.309	84.821	2	0.00017575	75345	160511_QHF_FH_JSI10i_2	82.261	57.423			1.0284	1.1016	103.9	2	0	Median	NaN	NaN	NaN	0	0	Median	1.9129	2.2965	NaN	1	0	Median	0.55292	0.52838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168980000	56544000	112440000	0	0	0	148140000	44538000	103600000	20846000	12006000	8840400	0	0	0	13338	5159	12648	81158;81159	109569	109569			1	
EQEAGVLAMDALHR	0	Unmodified	1538.7511	0.75112588	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	54.959	54.001	3	0.0030789	46367	160511_QHF_FH_JSI12i_2	45.438	39.252			0.91779	1.3759	21.452	4	2	Linear	1.8224	1.5325	NaN	1	1	Median	1.2899	1.6326	NaN	1	1	Median	1.0124	1.0198	NaN	1	0	Median	1.1151	1.2354	NaN	1	0	Median	148810000	65413000	83396000	22556000	8997200	13559000	41085000	17692000	23393000	56973000	26657000	30316000	28194000	12066000	16128000	13339	232	12649	81160;81161;81162;81163	109570;109571;109572	109570			3	
EQEAKYQASHPNLR	1	Acetyl (K)	1711.8278	0.8277963	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		33.43	23.722	3	0.027429	14191	160513_QHF_FH_JSI11Kac_5	31.614	21.004			0.2976	0.29171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2976	0.29171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3689600	2652800	1036700	0	0	0	0	0	0	3689600	2652800	1036700	0	0	0	13340	720	12650	81164	109573	109573			1	
EQEDLAK	1	Unmodified	831.39741	0.39741221	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	7.8842	7.4997	2	0.011756	5406	160511_QHF_FH_JSI12i_1	60.76	29.47			0.51961	0.37558	5.5971	3	3	Plateau	0.51961	0.41372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39168	0.3754	NaN	1	1	Median	0.3533	0.37558	NaN	1	1	Median	3108300000	2437100000	671200000	967210000	728210000	238990000	0	0	0	1087200000	868580000	218650000	1053800000	840270000	213560000	13341	4881	12651	81165;81166;81167;81168	109574;109575;109576;109577	109576			4	
EQEDVASTTRK	1	Unmodified	1262.6103	0.61025853	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	6.8803	6.5281	2;3	0.0097195	4502	160511_QHF_FH_JSI12i_1	63.408	36.154			0.70913	0.72131	38.128	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70913	0.72131	38.128	2	2	Median	96127000	58034000	38093000	0	0	0	0	0	0	0	0	0	96127000	58034000	38093000	13342	615	12652	81169;81170	109578;109579	109578			2	
EQEEAAAPR	0	Unmodified	999.46214	0.46213773	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.4	4.8	4					1				2	1	2		7.05	5.2599	2	0.00069397	4168	160511_QHF_FH_JSI11i_1	86.67	40.244			1.1839	1.1254	12.804	5	4	Median	1.4301	1.1764	6.272	2	2	Median	0.76604	0.91068	NaN	1	1	Median	1.0883	1.0446	12.884	2	1	Median	NaN	NaN	NaN	0	0	Median	211760000	73029000	138730000	127690000	33693000	93997000	43430000	21459000	21971000	40643000	17876000	22767000	0	0	0	13343	3469	12653	81171;81172;81173;81174;81175	109580;109581;109582;109583;109584	109580			5	
EQEEEEQKQEMEVK	2	Unmodified	1791.7833	0.78327345	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	3										1		2	15.056	14.679	2;3	0.00016169	12128	160511_QHF_FH_JSI10i_1	62.377	52.962			0.86312	0.95355	45.798	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1024	1.3182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6758	0.68977	NaN	1	0	Median	145030000	83068000	61963000	0	0	0	77396000	37023000	40373000	0	0	0	67635000	46045000	21590000	13344	4686	12654	81176;81177;81178	109585;109586	109586			2	
EQEEELR	0	Unmodified	931.42469	0.42468959	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	10.368	3.1749	2	0.031931	4312	160513_QHF_FH_JSI11Kac_3	60.961	3.402			0.8807	0.91005	11.369	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8641	0.83975	NaN	1	0	Median	0.89762	0.98623	NaN	1	0	Median	6556000	3517100	3038800	0	0	0	0	0	0	3627000	1788200	1838900	2928900	1729000	1200000	13345	3277	12655	81179;81180	109587	109587			1	
EQEEELRR	0	Unmodified	1087.5258	0.52580062	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	7.365	6.7633	2	0.030269	4593	160511_QHF_FH_JSI12i_2	59.35	6.8678			0.95452	1.0814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95452	1.0814	NaN	1	1	Median	52157000	25848000	26309000	0	0	0	0	0	0	0	0	0	52157000	25848000	26309000	13346	3277	12656	81181	109588	109588			1	
EQEELER	0	Unmodified	931.42469	0.42468959	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	8.7387	8.3119	2	0.014149	5879	160511_QHF_FH_JSI9i_1	66.682	0			1.0035	1.0594	7.3033	3	0	Median	1.4405	1.1942	NaN	1	0	Median	0.92752	1.0594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0035	1.0463	NaN	1	0	Median	386480000	188110000	198370000	119590000	55344000	64246000	118710000	58953000	59753000	0	0	0	148180000	73818000	74367000	13347	2521	12657	81182;81183;81184	109589	109589			1	
EQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR	0	Unmodified	3507.6026	0.60261355	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	65.582	64.93	4	3.2474E-07	56744	160511_QHF_FH_JSI11i_2	52.92	46.508			1.0764	1.107	17.796	4	2	Median	1.2456	1.0672	NaN	1	1	Median	0.93024	1.1482	NaN	1	0	Median	1.249	1.2605	NaN	1	1	Median	0.81553	0.83202	NaN	1	0	Median	177750000	84145000	93608000	20788000	6608500	14180000	59239000	33690000	25549000	34147000	11631000	22516000	63579000	32216000	31363000	13348	4886	12658	81185;81186;81187;81188	109590;109591;109592;109593	109591			4	
EQEETIQR	0	Unmodified	1031.4884	0.48835248	2369	Q13190	STX5	Syntaxin-5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.3491	7.9889	2	0.001572	5916	160511_QHF_FH_JSI12i_1	87.696	37.57			0.8883	0.92289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8883	0.92289	NaN	1	0	Median	64165000	29343000	34823000	0	0	0	0	0	0	0	0	0	64165000	29343000	34823000	13349	2369	12659	81189	109594	109594			1	
EQEFPVEPVGEK	1	Unmodified	1386.6667	0.66671078	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	47.297	46.621	2	9.2718E-11	42063	160511_QHF_FH_JSI11i_1	145.91	114.49			0.80906	0.82087	14.558	5	2	Median	0.97966	0.82087	NaN	1	0	Median	0.69029	0.80092	NaN	1	0	Median	0.80906	0.79266	NaN	1	0	Median	0.9318	0.96749	20.837	2	2	Median	406730000	216190000	190540000	78921000	39767000	39155000	86772000	53272000	33500000	90962000	48739000	42222000	150070000	74411000	75664000	13350	475	12660	81190;81191;81192;81193;81194	109595;109596;109597;109598;109599;109600;109601;109602;109603;109604	109595			10	
EQEGTPSASTK	1	Unmodified	1133.52	0.52004654	3808	Q8WXE0	CASKIN2	Caskin-2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.9982	6.3558	2	0.011208	4025	160511_QHF_FH_JSI9i_1	46.001	21.971			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13351	3808	12661	81195	109605	109605			1	
EQEHMINWVEK	1	Unmodified	1441.666	0.66599927	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	44.223	43.138	2;3	3.726E-05	37010	160511_QHF_FH_JSI12i_2	170.62	106.32			0.79663	0.84885	25.335	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8702	0.90141	NaN	1	1	Median	0.52294	0.59387	11.081	2	2	Median	1035900000	563230000	472690000	0	0	0	0	0	0	630610000	325700000	304910000	405310000	237530000	167780000	13352	1246	12662	81196;81197;81198	109606;109607;109608	109607			3	
EQEITAVQAR	0	Unmodified	1143.5884	0.58840088	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	3	1	23.412	20.187	2	0.0003368	17627	160511_QHF_FH_JSI12i_1	90.263	49.233			0.93736	1.0147	9.4493	8	4	Median	1.0061	0.81699	NaN	1	0	Median	0.91032	1.0835	2.0385	3	1	Plateau	0.94857	0.96299	6.6795	3	2	Median	0.97172	1.0051	NaN	1	1	Median	936980000	496930000	440050000	226610000	127340000	99273000	188210000	100660000	87542000	352070000	175980000	176090000	170100000	92952000	77145000	13353	5213	12663	81199;81200;81201;81202;81203;81204;81205;81206	109609;109610;109611;109612;109613;109614	109611			6	
EQEKGEGSDSK	2	Acetyl (K)	1234.5313	0.53133951	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	1	0	0	1			By MS/MS		12	0					1							1		5.8219	-1.4641	2	0.015343	1735	160513_QHF_FH_JSI11Kac_2	53.683	41.457			0.45219	0.44712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45219	0.44712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	931530	548050	383480	0	0	0	0	0	0	931530	548050	383480	0	0	0	13354	3132	12664	81207	109615	109615	2776		1	
EQELDTLK	1	Unmodified	974.49204	0.49204087	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	24.885	24.238	2	0.0055732	21533	160511_QHF_FH_JSI12i_1	65.224	12.508			0.97509	0.80459	37.558	3	2	Median	0.97509	0.80459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3799	1.3351	NaN	1	1	Median	0.63452	0.64104	NaN	1	0	Median	496260000	271680000	224570000	155820000	92040000	63778000	0	0	0	160740000	74034000	86702000	179700000	105610000	74092000	13355	999	12665	81208;81209;81210	109616;109617;109618	109617			3	
EQELHYGIK	1	Unmodified	1115.5611	0.56112349	5821				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.693	20.201	2	0.0046641	17658	160511_QHF_FH_JSI12i_1	66.351	13.565	+		0.078561	0.082667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.078561	0.082667	NaN	1	1	Median	104400000	95838000	8557700	0	0	0	0	0	0	0	0	0	104400000	95838000	8557700	13356	5821	12666	81211	109619	109619			1	
EQELQQTLQQEQSVLDQLRGEAEAAR	0	Unmodified	2996.4799	0.47991964	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		95.962	95.791	3	2.8109E-26	84759	160511_QHF_FH_JSI10i_2	140.11	128.03			0.94815	0.99008	26.698	4	1	Median	0.95358	0.83969	NaN	1	0	Median	0.86619	1.075	NaN	1	0	Median	1.2482	1.1828	36.786	2	1	Median	NaN	NaN	NaN	0	0	Median	119800000	56750000	63048000	46000000	23840000	22160000	40261000	20335000	19926000	33537000	12575000	20963000	0	0	0	13357	2636	12667	81212;81213;81214;81215	109620;109621;109622;109623;109624;109625;109626	109625			7	
EQELSEEDK	1	Unmodified	1105.4775	0.47751302	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.006	9.6255	2	0.0024328	7202	160511_QHF_FH_JSI9i_1	64.711	10.96			1.5352	1.4954	19.668	4	1	Median	1.7953	1.4575	NaN	1	0	Median	1.3128	1.5342	NaN	1	0	Median	1.1842	1.1641	NaN	1	0	Median	1.8085	1.879	NaN	1	1	Median	204320000	76437000	127890000	48661000	18117000	30544000	57431000	24806000	32625000	44942000	17007000	27934000	53289000	16507000	36782000	13358	2370	12668	81216;81217;81218;81219	109627;109628;109629;109630	109630			4	
EQENKTLVLSDKHSPQK	3	2 Acetyl (K)	2064.0487	0.048747692	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	2	0	0	2				By MS/MS	14	0							1						1	51.604	41.132	3	0.0036052	23596	160513_QHF_FH_JSI12Kac_4	47.726	37.627			0.62328	0.67767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62328	0.67767	NaN	1	0	Median	4523200	3018600	1504600	0	0	0	0	0	0	0	0	0	4523200	3018600	1504600	13359	3647	12669	81220	109631;109632	109632	2902;2903;2904		2	
EQEPARRVSR	0	Unmodified	1226.648	0.64798144	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2				By MS/MS	16	0									1				1	5.9206	-1.0116	4	0.052074	1940	160513_QHF_FH_JSI12Kac_6	17.026	0			0.69417	0.75156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69417	0.75156	NaN	1	0	Median	8579200	3865700	4713600	0	0	0	0	0	0	0	0	0	8579200	3865700	4713600	13360	1576	12670	81221	109633	109633			0	
EQEPDFEEK	1	Unmodified	1149.4826	0.4825984	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	21.903	21.376	2	0.0006632	18581	160511_QHF_FH_JSI12i_1	76.465	63.877			1.1493	1.1956	6.4631	4	1	Median	1.5297	1.2622	NaN	1	0	Median	0.97512	1.1613	NaN	1	0	Median	1.2779	1.231	NaN	1	1	Median	1.0336	1.0919	NaN	1	0	Median	200050000	92612000	107430000	53456000	22482000	30974000	37150000	20134000	17015000	48057000	20962000	27094000	61384000	29034000	32350000	13361	3341	12671	81222;81223;81224;81225;81226;81227	109634;109635;109636;109637;109638;109639;109640;109641;109642;109643;109644	109636			11	
EQEPMPTVDSHEPR	0	Unmodified	1650.7308	0.73078437	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	5.79	8						3			2	4	2	3	28.651	26.307	2;3	2.5814E-05	23277	160511_QHF_FH_JSI10i_1	106.6	99.765			0.9408	0.95754	8.7665	10	1	Median	1.1147	0.90876	5.5728	2	0	Median	0.83939	1.0224	12.966	3	1	Plateau	0.97571	0.94935	5.2711	2	0	Median	0.91914	0.98329	6.5387	3	0	Plateau	1397400000	691530000	705860000	302370000	144720000	157660000	330400000	170570000	159830000	344910000	162340000	182570000	419700000	213900000	205800000	13362	4795	12672	81228;81229;81230;81231;81232;81233;81234;81235;81236;81237;81238	109645;109646;109647;109648;109649;109650;109651;109652;109653;109654;109655;109656;109657;109658;109659;109660;109661;109662;109663;109664	109657			20	
EQEPMPTVDSHEPR	0	Oxidation (M)	1666.7257	0.72569899	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	1	0				By MS/MS	7.5	6.5	1						1						2	24.69	17.047	2;3	0.011477	23549	160511_QHF_FH_JSI12i_1	54.7	39.883			0.97663	1.0645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97663	1.0645	NaN	1	0	Median	1855200	967620	887630	0	0	0	0	0	0	0	0	0	1855200	967620	887630	13363	4795	12672	81239;81240	109665;109666	109665		2532	2	
EQEQLER	0	Unmodified	930.44067	0.44067401	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		7.7708	7.3701	2	0.035831	4921	160511_QHF_FH_JSI9i_1	49.442	1.5259			1.3843	1.2502	15.55	2	0	Median	1.7004	1.3955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1269	1.12	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	272680000	121100000	151580000	138830000	56976000	81856000	0	0	0	133850000	64125000	69728000	0	0	0	13364	4428	12673	81241;81242	109667;109668	109668			2	
EQEQLNVEK	1	Unmodified	1115.5459	0.54586736	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	17.316	17.039	2	0.00019625	14326	160511_QHF_FH_JSI11i_1	85.29	55.914			0.93363	1.1069	15.836	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.85917	0.96833	NaN	1	0	Median	1.299	1.2653	NaN	1	0	Median	0.93363	0.9557	NaN	1	1	Median	112490000	54805000	57688000	0	0	0	33859000	18386000	15473000	45575000	19682000	25893000	33061000	16738000	16323000	13365	2691	12674	81243;81244;81245	109669;109670;109671	109669			3	
EQEVAEERR	0	Unmodified	1144.5473	0.54726434	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	5.5269	5.1241	2	4.408E-06	3008	160511_QHF_FH_JSI11i_2	119.68	75.331			1.094	0.98487	7.6914	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80629	0.98487	NaN	1	0	Median	1.094	1.0771	NaN	1	0	Median	0.847	0.92419	NaN	1	0	Median	127340000	67756000	59588000	0	0	0	38163000	23189000	14974000	50083000	20313000	29769000	39098000	24254000	14845000	13366	3411	12675	81246;81247;81248	109672;109673;109674	109674			3	
EQEVNILK	1	Unmodified	971.52876	0.52876073	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	35.991	32.562	2	0.0007934	18876	160513_QHF_FH_JSI11Kac_3	105.57	40.53			1.0276	1.0088	17.066	6	1	Median	1.7264	1.4116	NaN	1	1	Median	0.75397	0.88905	2.4345	2	0	Median	1.0336	1.0088	0.59927	2	0	Median	1.0291	1.0714	NaN	1	0	Median	2735500000	1356200000	1379300000	694140000	268560000	425580000	775850000	454070000	321780000	698310000	345640000	352660000	567220000	287900000	279320000	13367	1436	12676	81249;81250;81251;81252;81253;81254	109675;109676;109677;109678;109679;109680;109681	109678			7	
EQEVNILKK	2	Unmodified	1099.6237	0.62372375	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	25.374	24.492	2;3	0.0016191	20347	160511_QHF_FH_JSI11i_2	83.948	47.762			1.6642	1.9153	30.594	4	4	Median	3.2647	2.8941	NaN	1	1	Median	1.499	1.815	NaN	1	1	Median	1.3286	1.382	NaN	1	1	Median	1.8475	2.0211	NaN	1	1	Median	163930000	67978000	95949000	48417000	17310000	31107000	57493000	29572000	27921000	36446000	13694000	22752000	21570000	7400900	14169000	13368	1436	12677	81255;81256;81257;81258	109682;109683;109684;109685	109684			4	
EQEVNILKK	2	Acetyl (K)	1141.6343	0.63428844	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		50.511	41.023	2	0.04391	22531	160513_QHF_FH_JSI11Kac_3	57.59	33.559			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1930900	1930900	0	0	0	0	0	0	0	1930900	1930900	0	0	0	0	13369	1436	12677	81259	109686	109686			1	
EQEWNTTNAK	1	Unmodified	1219.5469	0.54692999	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.637	14.183	2	2.0646E-10	11774	160511_QHF_FH_JSI10i_1	140.75	44.501			0.85334	0.83296	15.81	4	1	Median	0.84484	0.6857	NaN	1	0	Median	0.66853	0.79349	NaN	1	0	Median	1.0261	0.99746	NaN	1	1	Median	0.86192	0.87439	NaN	1	0	Median	393760000	215500000	178260000	55287000	32828000	22458000	123860000	78951000	44908000	98988000	49723000	49265000	115630000	53999000	61629000	13370	24	12678	81260;81261;81262;81263	109687;109688;109689;109690	109689			4	
EQFASTNIAEELVK	1	Unmodified	1577.7937	0.7937022	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.746	73.245	2	1.3411E-09	66737	160511_QHF_FH_JSI12i_1	142.91	131.04			0.95314	0.92192	12.138	4	1	Median	1.1199	0.89959	NaN	1	1	Median	0.62919	0.73839	NaN	1	0	Median	0.98351	0.96179	NaN	1	0	Median	0.92372	0.94482	NaN	1	0	Median	210570000	110130000	100450000	39290000	19963000	19327000	47155000	26120000	21034000	57370000	29433000	27937000	66757000	34609000	32148000	13371	1769	12679	81264;81265;81266;81267	109691;109692;109693;109694;109695;109696	109693			6	
EQFLDGDGWTSR	0	Unmodified	1409.6212	0.62115757	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.26	3.98	8	11	5				2	1		8	5	7	7	58.426	56.055	2	3.8591E-42	47838	160511_QHF_FH_JSI12i_2	208.74	190.92			1.0299	1.0314	11.706	20	3	Median	1.2291	1.0178	6.1699	3	0	Plateau	0.8213	0.97692	7.9209	5	1	Median	1.0723	1.044	4.758	5	0	Median	1.0109	1.0688	16.418	7	2	Median	13364000000	6577200000	6786900000	2203500000	1012300000	1191200000	3739200000	2041200000	1698000000	3984600000	1868300000	2116300000	3436800000	1655400000	1781400000	13372	1297	12680	81268;81269;81270;81271;81272;81273;81274;81275;81276;81277;81278;81279;81280;81281;81282;81283;81284;81285;81286;81287;81288;81289;81290;81291;81292;81293;81294	109697;109698;109699;109700;109701;109702;109703;109704;109705;109706;109707;109708;109709;109710;109711;109712;109713;109714;109715;109716;109717;109718;109719;109720;109721;109722;109723;109724;109725;109726;109727;109728;109729;109730;109731;109732;109733;109734;109735;109736;109737;109738;109739;109740;109741;109742;109743;109744;109745;109746	109701			49	
EQFNEFR	0	Unmodified	968.43519	0.4351947	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	2	3	3	30.201	28.507	2	0.00018693	24684	160511_QHF_FH_JSI9i_2	138.54	102.66			0.94559	0.881	8.2292	10	0	Median	1.0653	0.87066	6.7661	3	0	Median	0.71098	0.86055	3.6907	2	0	Median	0.95818	0.94598	11.045	2	0	Median	0.89163	0.98809	8.9694	3	0	Median	4525400000	2229600000	2295700000	979600000	426410000	553190000	1023000000	611870000	411140000	1437900000	644660000	793260000	1084800000	546700000	538130000	13373	2652	12681	81295;81296;81297;81298;81299;81300;81301;81302;81303;81304;81305	109747;109748;109749;109750;109751;109752;109753;109754;109755;109756;109757;109758;109759;109760;109761;109762;109763;109764;109765;109766;109767;109768	109762			22	
EQFNEFRDLNK	1	Unmodified	1438.6841	0.68409218	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	42.533	41.485	2;3	0.00074845	36197	160511_QHF_FH_JSI9i_2	50.354	36.545			1.1231	1.1324	22.555	5	0	Median	1.1231	0.9801	NaN	1	0	Median	0.80675	0.96786	NaN	1	0	Median	1.121	1.1324	NaN	1	0	Median	1.3235	1.4442	21.568	2	0	Median	655070000	324140000	330930000	104800000	62452000	42350000	154490000	78136000	76354000	170730000	70090000	100640000	225050000	113460000	111590000	13374	2652	12682	81306;81307;81308;81309;81310	109769;109770;109771;109772;109773;109774	109771			5	
EQFVEFR	0	Unmodified	953.46068	0.46068117	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	3	2	1	43.256	42.371	2	0.0063899	36267	160511_QHF_FH_JSI12i_2	95.531	49.179			0.78994	0.88217	12.15	7	1	Median	1.1894	1.0131	NaN	1	0	Median	0.67371	0.8019	6.9275	3	1	Plateau	0.90575	0.91133	18.1	2	0	Median	0.90765	0.9991	NaN	1	0	Median	1079100000	540770000	538380000	208600000	81596000	127000000	280270000	151840000	128430000	394530000	197440000	197090000	195740000	109900000	85848000	13375	388	12683	81311;81312;81313;81314;81315;81316;81317	109775;109776;109777;109778;109779;109780;109781;109782	109777			8	
EQFVEFRDK	1	Unmodified	1196.5826	0.58258722	388	O43852	CALU	Calumenin	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	33.7	33.347	3	0.015849	28105	160511_QHF_FH_JSI12i_3	32.523	6.5849			1.9624	1.9724	60.347	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73605	0.91179	NaN	1	0	Median	3.2097	2.9957	NaN	1	1	Median	1.9624	1.9724	NaN	1	0	Median	204910000	81254000	123650000	0	0	0	61257000	33219000	28038000	49467000	13302000	36165000	94183000	34733000	59450000	13376	388	12684	81318;81319;81320	109783;109784	109784			2	
EQFVPGPNEK	1	Unmodified	1143.556	0.55603812	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.776	28.502	2	0.0021201	24739	160511_QHF_FH_JSI9i_1	61.78	28.939			0.76643	0.61678	NaN	1	0	Median	0.76643	0.61678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59520000	32228000	27292000	59520000	32228000	27292000	0	0	0	0	0	0	0	0	0	13377	421	12685	81321	109785	109785			1	
EQGFLSFWR	0	Unmodified	1168.5665	0.56654322	1013	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.7		4	3						5	2	3	3	4	84.444	80.561	2	1.0453E-05	39828	160513_QHF_FH_JSI12Kac_6	123.63	74.207			0.97928	1.0403	17.285	12	3	Median	1.628	1.3956	23.222	2	1	Median	0.92802	1.074	8.4318	3	0	Median	1.0387	0.98489	5.533	3	0	Median	0.87468	0.9303	8.9424	4	2	Median	740920000	364500000	376410000	78606000	27906000	50700000	186880000	98016000	88868000	217880000	104920000	112960000	257550000	133660000	123890000	13378	1013	12686	81322;81323;81324;81325;81326;81327;81328;81329;81330;81331;81332;81333	109786;109787;109788;109789;109790;109791;109792;109793;109794;109795;109796;109797;109798;109799;109800;109801;109802;109803	109801			18	
EQGIQDPIK	1	Unmodified	1026.5346	0.53457439	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5	5.66	2					1				1			2	29.599	28.681	2	0.00053179	25077	160511_QHF_FH_JSI9i_1	78.939	64.27			0.8302	0.76469	33.542	2	0	Median	0.73008	0.60323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94405	0.96937	NaN	1	0	Median	181000000	93349000	87649000	80071000	38643000	41428000	0	0	0	0	0	0	100930000	54705000	46221000	13379	3432	12687	81334;81335;81336	109804;109805	109804			2	
EQGKTISNDDDVQK	2	Acetyl (K)	1617.7482	0.74820857	5747	Q9Y6Q9	NCOA3	Nuclear receptor coactivator 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	28.734	21.168	2	0.0027435	10058	160513_QHF_FH_JSI10Kac_2	78.096	57.793			1.0323	1.0369	7.8147	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0224	0.98117	NaN	1	0	Median	1.0423	1.0958	NaN	1	0	Median	6743300	3689700	3053700	0	0	0	1444800	1444800	0	1943500	778070	1165400	3355100	1466800	1888300	13380	5747	12688	81337;81338;81339	109806;109807;109808	109808	3544		3	
EQGNAYYAK	1	Unmodified	1042.472	0.47197413	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	12.218	9.4961	2	2.6249E-06	8201	160511_QHF_FH_JSI10i_1	125.82	85.549			0.75718	0.77059	14.382	6	0	Median	1.2982	1.0556	NaN	1	0	Median	0.64959	0.75456	0.031796	2	0	Median	0.8671	0.84499	10.095	2	0	Median	0.69573	0.72872	NaN	1	0	Median	1206000000	602980000	603000000	292800000	123780000	169020000	339090000	190670000	148420000	332190000	160190000	172000000	241900000	128340000	113560000	13381	4294	12689	81340;81341;81342;81343;81344;81345	109809;109810;109811;109812;109813;109814;109815	109812			7	
EQGNIEEAVR	0	Unmodified	1143.552	0.55201537	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	21.287	20.639	2	0.0037674	18069	160511_QHF_FH_JSI12i_1	58.63	27.1			1.1661	0.97001	29.377	3	2	Plateau	1.1661	0.97001	NaN	1	0	Median	0.52932	0.61644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0057	1.0688	NaN	1	1	Median	134820000	74884000	59938000	44690000	25502000	19188000	40222000	22059000	18163000	0	0	0	49910000	27323000	22587000	13382	274	12690	81346;81347;81348;81349	109816;109817;109818;109819	109817			4	
EQGNIYKPNNK	2	Unmodified	1303.6521	0.65206377	2202	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.6064	9.7039	2	0.0059142	7006	160511_QHF_FH_JSI12i_3	89.247	63.309			0.43873	0.47306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43873	0.47306	NaN	1	1	Median	11528000	7339300	4188600	0	0	0	0	0	0	0	0	0	11528000	7339300	4188600	13383	2202	12691	81350	109820	109820			1	
EQGPYETYEGSPVSK	1	Unmodified	1669.7471	0.74714594	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	8					6				2	5	4	3	39.823	35.936	2;3	8.9076E-81	32307	160511_QHF_FH_JSI10i_1	245.69	245.69			0.9978	0.99791	16.045	13	1	Median	1.2491	1.0247	9.5989	2	0	Median	0.849	1.0014	30.782	4	1	Median	1.0199	1.0211	3.4773	4	0	Linear	0.9293	0.97955	6.0233	3	0	Median	3657800000	1927200000	1730600000	693680000	354380000	339310000	1030200000	580250000	449960000	1088200000	603050000	485170000	845680000	389480000	456200000	13384	1242	12692	81351;81352;81353;81354;81355;81356;81357;81358;81359;81360;81361;81362;81363;81364	109821;109822;109823;109824;109825;109826;109827;109828;109829;109830;109831;109832;109833;109834;109835;109836;109837;109838;109839;109840;109841;109842;109843;109844	109835			24	
EQGQAPITPQQGQALAK	1	Unmodified	1763.9166	0.91661131	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	37.559	36.887	2;3	3.5554E-08	33107	160511_QHF_FH_JSI11i_1	138.42	119.68			1.0756	0.98829	18.054	6	0	Median	1.1741	0.96234	3.7017	2	0	Median	1.0496	1.2256	30.372	2	0	Median	1.0135	0.99862	NaN	1	0	Median	0.96838	0.98643	NaN	1	0	Median	584510000	292880000	291630000	191190000	84418000	106780000	194330000	112640000	81692000	114500000	52591000	61905000	84485000	43230000	41255000	13385	2128	12693	81365;81366;81367;81368;81369;81370	109845;109846;109847;109848;109849;109850;109851;109852;109853;109854;109855	109845			11	
EQGQAPITPQQGQALAKQIHAVR	1	Acetyl (K)	2510.3354	0.33536808	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.888	63.157	3	0.0013488	33701	160513_QHF_FH_JSI11Kac_5	66.045	58.684			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2445000	2445000	0	0	0	0	0	0	0	2445000	2445000	0	0	0	0	13386	2128	12694	81371	109856	109856	2226		1	
EQGQNLAR	0	Unmodified	914.45699	0.45699277	1946;2023	P61224;A6NIZ1;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	1	3	3	6.4949	2.632	2	2.8754E-06	3774	160511_QHF_FH_JSI10i_1	141.39	97.581			0.99502	1.0344	8.068	8	0	Median	1.2594	1.0297	NaN	1	0	Median	0.84145	0.98322	NaN	1	0	Median	1.1111	1.0877	12.873	3	0	Median	0.93773	0.99864	3.8354	3	0	Plateau	5029400000	2646500000	2382900000	840270000	400590000	439680000	1506400000	851850000	654520000	1392600000	680530000	712030000	1290200000	713580000	576650000	13387	1946;2023	12695	81372;81373;81374;81375;81376;81377;81378;81379	109857;109858;109859;109860;109861;109862;109863;109864;109865;109866;109867	109863			11	
EQGVEEHETLLLR	0	Unmodified	1551.7893	0.78928553	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	42.802	41.834	2;3	5.8167E-06	35866	160511_QHF_FH_JSI12i_2	119.96	99.582			0.90815	0.94174	16.985	8	2	Median	0.85626	0.73978	6.0238	2	0	Median	0.84132	1.0209	9.328	2	1	Median	0.87125	0.89596	4.9624	2	1	Median	1.0038	1.0977	8.5589	2	0	Median	482470000	241560000	240910000	77620000	41688000	35932000	105560000	52574000	52990000	178250000	97304000	80949000	121030000	49993000	71040000	13388	5616	12696	81380;81381;81382;81383;81384;81385;81386;81387	109868;109869;109870;109871;109872;109873;109874;109875;109876;109877;109878;109879	109870			12	
EQGVLSFWR	0	Unmodified	1120.5665	0.56654322	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.71	4	4	4				1	4	5	5	7	5	5	74.722	69.835	2	2.4393E-11	61530	160511_QHF_FH_JSI12i_3	160.59	124.19			1.0297	1.054	10.782	21	6	Median	1.3137	1.1089	13.885	5	3	Median	0.83818	1.0031	9.4791	6	2	Median	1.1379	1.1094	9.0642	5	0	Median	0.97681	1.0316	12.114	5	1	Median	19899000000	9288800000	10610000000	2958900000	1254300000	1704600000	3648200000	1998800000	1649400000	7294900000	3312800000	3982200000	5997000000	2723000000	3274000000	13389	1014;826	12697	81388;81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400;81401;81402;81403;81404;81405;81406;81407;81408;81409	109880;109881;109882;109883;109884;109885;109886;109887;109888;109889;109890;109891;109892;109893;109894;109895;109896;109897;109898;109899;109900;109901;109902;109903;109904;109905;109906;109907;109908;109909;109910;109911;109912;109913	109908			34	
EQGVTFPAIGSQAAEQAK	1	Unmodified	1830.9112	0.91119158	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	59.776	59.208	2;3	6.0986E-11	53496	160511_QHF_FH_JSI10i_1	153.24	120.71			0.664	0.697	106.25	3	2	Median	NaN	NaN	NaN	0	0	Median	0.55625	0.64941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.632	1.7177	127.55	2	1	Median	398450000	97844000	300610000	0	0	0	56849000	33863000	22986000	0	0	0	341610000	63981000	277620000	13390	3883	12698	81410;81411;81412	109914;109915;109916;109917	109917			4	
EQGVTFPSGDIQEQLIR	0	Unmodified	1915.964	0.96395543	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.712	8	5	2							3	4	5	3	77.482	76.895	2;3	1.7563E-81	69721	160511_QHF_FH_JSI10i_1	251.84	229.26			0.91338	0.97291	20.249	12	3	Median	1.3589	1.1152	0.75793	2	0	Median	0.91431	1.071	17.5	3	1	Median	0.94532	0.90582	24.621	4	2	Median	0.84664	0.90063	8.9556	3	0	Median	4229500000	2072100000	2157400000	808030000	338390000	469630000	1253600000	564160000	689390000	1114300000	595810000	518470000	1053700000	573720000	479960000	13391	1650	12699	81413;81414;81415;81416;81417;81418;81419;81420;81421;81422;81423;81424;81425;81426;81427	109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930;109931;109932;109933;109934;109935;109936;109937;109938;109939;109940	109930			23	
EQGYDVIAYLANIGQK	1	Unmodified	1780.8996	0.89956426	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.5	8	8	4					2	7	8	7	8	6	98.235	95.463	2;3	8.3853E-262	88823	160511_QHF_FH_JSI9i_2	362.35	270.8			0.96828	0.96967	35.502	29	4	Median	1.1595	0.95918	17.43	8	0	Median	0.87397	1.044	19.981	7	1	Median	0.92537	0.91318	63.442	8	2	Median	0.88224	0.96661	18.823	6	1	Median	16769000000	8670300000	8098400000	3404200000	1547500000	1856700000	4201900000	2280400000	1921500000	4523100000	2345000000	2178100000	4639500000	2497400000	2142100000	13392	779	12700	81428;81429;81430;81431;81432;81433;81434;81435;81436;81437;81438;81439;81440;81441;81442;81443;81444;81445;81446;81447;81448;81449;81450;81451;81452;81453;81454;81455;81456	109941;109942;109943;109944;109945;109946;109947;109948;109949;109950;109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963;109964;109965;109966;109967;109968;109969;109970;109971;109972;109973;109974;109975;109976;109977;109978;109979;109980;109981;109982;109983;109984;109985;109986;109987;109988;109989	109971			49	
EQGYDVIAYLANIGQKEDFEEAR	1	Unmodified	2657.2609	0.26092531	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	101.2	101.11	3	3.3267E-42	89618	160511_QHF_FH_JSI10i_2	232.07	209.07			0.86219	0.91791	13.573	4	2	Median	NaN	NaN	NaN	0	0	Median	0.69595	0.84569	NaN	1	1	Median	0.90115	0.91024	NaN	1	1	Median	0.96685	1.0354	15.851	2	0	Median	1299300000	750370000	548880000	0	0	0	261180000	179400000	81780000	333160000	197080000	136080000	704910000	373880000	331030000	13393	779	12701	81457;81458;81459;81460	109990;109991;109992;109993	109992			4	
EQHAAELK	1	Unmodified	924.46649	0.46649483	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	6.1074	5.5233	2	0.0049627	3512	160511_QHF_FH_JSI12i_2	65.246	29.366			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13394	2841	12702	81461	109994	109994			1	
EQHDAQVR	0	Unmodified	981.46281	0.46280643	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	0.1279	-0.26997	2;3	0.021912	17	160511_QHF_FH_JSI12i_2	44.447	15.935			0.4964	0.57071	11.737	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5305	0.62009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4645	0.52526	NaN	1	0	Median	26302000	16643000	9659300	0	0	0	16809000	10825000	5983900	0	0	0	9493300	5817900	3675400	13395	1180	12703	81462;81463	109995;109996	109995			2	
EQHGLQLQSEINQLHSK	1	Unmodified	1988.0076	0.007551579	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	47.271	47.029	3;4	9.9814E-07	40198	160511_QHF_FH_JSI12i_3	113.47	97.882			0.83244	0.88013	13.761	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83244	0.88013	13.761	2	1	Median	206210000	116370000	89834000	0	0	0	0	0	0	0	0	0	206210000	116370000	89834000	13396	2627	12704	81464;81465	109997;109998	109998			2	
EQHLAQLQQLQQMHQK	1	Unmodified	1987.0058	0.00577744	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	43.243	43.127	4	1.8109E-05	37964	160511_QHF_FH_JSI11i_3	77.222	67.165			0.94877	0.92015	0.030716	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97334	0.91995	NaN	1	0	Median	0.92482	0.92035	NaN	1	1	Median	209660000	109480000	100190000	0	0	0	0	0	0	84390000	42597000	41793000	125270000	66880000	58393000	13397	1676	12705	81466;81467	109999;110000;110001	109999			3	
EQHLSENEPVDTNSDNNLFTDTDLK	1	Unmodified	2874.2792	0.27915415	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	63.484	63.115	3	4.1225E-07	57084	160511_QHF_FH_JSI10i_1	68.689	66.076			0.81661	0.92979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81661	0.92979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29773000	15951000	13822000	0	0	0	29773000	15951000	13822000	0	0	0	0	0	0	13398	462	12706	81468;81469;81470	110002;110003;110004;110005	110004			4	
EQHQKLWEEQLAAAK	2	Acetyl (K)	1849.9323	0.93226137	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		66.424	55.509	3	0.0037915	29980	160513_QHF_FH_JSI11Kac_5	61.097	42.959			0.14794	0.14818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14794	0.14818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7838700	6977100	861590	0	0	0	0	0	0	7838700	6977100	861590	0	0	0	13399	1050	12707	81471	110006	110006	880		1	
EQHTEDTVK	1	Unmodified	1085.4989	0.49891717	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	4.9489	3.1778	2;3	1.2507E-06	2441	160511_QHF_FH_JSI11i_1	133.57	97.694			0.88419	0.89022	18.658	5	0	Median	1.0837	0.89022	NaN	1	0	Median	0.67531	0.78863	NaN	1	0	Median	0.94377	0.92143	34.742	2	0	Median	0.88419	0.92565	NaN	1	0	Median	631180000	336320000	294860000	139110000	61999000	77116000	169970000	104600000	65364000	159550000	82243000	77305000	162550000	87479000	75074000	13400	2804	12708	81472;81473;81474;81475;81476	110007;110008;110009;110010;110011;110012;110013	110007			6	
EQIDIFEGIK	1	Unmodified	1190.6183	0.61830402	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	74.231	73.875	2	9.427E-06	67251	160511_QHF_FH_JSI12i_1	105.4	65.395			0.8138	0.83826	14.586	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75731	0.88969	NaN	1	0	Median	0.69103	0.67437	NaN	1	0	Median	0.82325	0.83826	NaN	1	0	Median	211250000	106900000	104350000	0	0	0	72978000	37136000	35842000	53637000	30001000	23636000	84634000	39766000	44868000	13401	4122	12709	81477;81478;81479;81480	110014;110015;110016;110017;110018;110019	110017			6	
EQIDPALFAK	1	Unmodified	1130.5972	0.59717465	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.497	58.841	2	0.033877	53519	160511_QHF_FH_JSI12i_1	39.001	19.907			0.52235	0.53589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52235	0.53589	NaN	1	0	Median	47355000	29226000	18129000	0	0	0	0	0	0	0	0	0	47355000	29226000	18129000	13402	3061	12710	81481	110020	110020			1	
EQIEKLR	1	Acetyl (K)	956.5291	0.52909508	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		34.475	25.182	2	0.043219	15665	160513_QHF_FH_JSI11Kac_4	62.464	7.8528			1.2743	1.2431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2743	1.2431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7478700	3915200	3563500	0	0	0	0	0	0	7478700	3915200	3563500	0	0	0	13403	1449	12711	81482	110021	110021			1	
EQIIELELK	1	Unmodified	1113.6281	0.62814043	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			66.815	66.483	2	0.036999	60231	160511_QHF_FH_JSI10i_1	46.819	23.748			0.50329	0.57388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50329	0.57388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34996000	24052000	10944000	0	0	0	34996000	24052000	10944000	0	0	0	0	0	0	13404	3860	12712	81483	110022	110022			1	
EQILEEFSK	1	Unmodified	1121.5605	0.56045479	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.91	5	1				1	2			2	2	2	3	58.713	54.489	2	1.0716E-06	49567	160511_QHF_FH_JSI12i_1	145.89	67.552			1.0097	1.031	24.819	8	2	Median	1.2498	1.0341	NaN	1	1	Median	0.85231	1.0197	1.1296	2	1	Median	1.3625	1.3524	40.82	2	0	Median	0.91944	0.96395	29.004	3	0	Plateau	2455300000	1271000000	1184400000	492660000	238570000	254100000	592760000	340770000	251990000	764320000	407640000	356680000	605600000	284000000	321590000	13405	423	12713	81484;81485;81486;81487;81488;81489;81490;81491;81492	110023;110024;110025;110026;110027;110028;110029;110030;110031;110032;110033;110034	110026			12	
EQILGDEAR	0	Unmodified	1029.5091	0.50908792	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	22.81	22.191	2	0.00096274	19516	160511_QHF_FH_JSI12i_1	76.064	41.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13406	2466	12714	81493;81494;81495	110035;110036;110037	110036			3	
EQIPLKPK	2	Acetyl (K)	993.58588	0.58588168	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		51.065	41.578	2	0.039968	22804	160513_QHF_FH_JSI11Kac_3	51.854	39.949			0.65849	0.64022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65849	0.64022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1378400	857370	521000	0	0	0	0	0	0	1378400	857370	521000	0	0	0	13407	1584	12715	81496	110038	110038			1	
EQISDIDDAVR	0	Unmodified	1259.5994	0.59935949	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.87	5.44	4	1			3	7				2	4	4	5	45.664	38.8	2	3.7293E-23	37214	160511_QHF_FH_JSI10i_1	174.77	111.35			0.96278	0.96404	49.197	14	3	Median	1.1816	0.42117	115.53	2	0	Median	0.86565	1.0391	9.6716	3	1	Median	1.031	0.99401	14.56	4	0	Median	0.9011	0.94347	35.609	5	2	Median	11801000000	6031900000	5769500000	1668800000	762270000	906560000	2923400000	1656200000	1267200000	3785700000	1844500000	1941200000	3423600000	1768900000	1654600000	13408	1815	12716	81497;81498;81499;81500;81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511	110039;110040;110041;110042;110043;110044;110045;110046;110047;110048;110049;110050;110051;110052;110053;110054;110055;110056;110057;110058	110048			20	
EQISENPTEATDIGFGNR	0	Unmodified	1976.9076	0.90756276	2228	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	57.623	56.893	2	4.1309E-11	50459	160511_QHF_FH_JSI9i_1	140.1	85.632			1.3912	1.0548	16.994	3	3	Plateau	1.5935	1.2995	NaN	1	1	Median	0.90483	1.0007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3912	1.3765	NaN	1	1	Median	48321000	23774000	24547000	16190000	5544800	10645000	19501000	13261000	6239800	0	0	0	12630000	4968700	7661700	13409	2228	12717	81512;81513;81514;81515	110059;110060;110061;110062	110062			4	
EQITGQIDK	1	Unmodified	1030.5295	0.52948901	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		20.743	20.614	2	0.030587	17765	160511_QHF_FH_JSI11i_1	48.091	16.802			1.3531	1.3165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3531	1.3165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34311000	14291000	20019000	0	0	0	0	0	0	34311000	14291000	20019000	0	0	0	13410	3285	12718	81516	110063	110063			1	
EQITKFFLK	2	Acetyl (K)	1194.6649	0.66486028	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.92	71.369	2	0.035809	37816	160513_QHF_FH_JSI11Kac_5	56.258	40.377			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3606500	3606500	0	0	0	0	0	0	0	3606500	3606500	0	0	0	0	13411	723	12719	81517	110064	110064			1	
EQIVPKPEEEVAQK	2	Unmodified	1622.8516	0.85155143	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.27	8	8	4			3	3	1		6	7	7	7	35.916	32.394	2;3	1.2699E-39	30196	160511_QHF_FH_JSI10i_1	204.48	180.19			0.91746	1.0062	16.717	26	1	Median	1.2206	1.047	20.625	6	0	Median	0.90515	1.0863	14.553	7	0	Median	0.91191	0.91577	15.332	7	1	Median	0.80195	0.77818	12.93	6	0	Linear	14580000000	6737900000	7841800000	3244000000	1471600000	1772400000	4278900000	2050500000	2228400000	3992900000	1766200000	2226800000	3063800000	1449600000	1614200000	13412	1143	12720	81518;81519;81520;81521;81522;81523;81524;81525;81526;81527;81528;81529;81530;81531;81532;81533;81534;81535;81536;81537;81538;81539;81540;81541;81542;81543;81544	110065;110066;110067;110068;110069;110070;110071;110072;110073;110074;110075;110076;110077;110078;110079;110080;110081;110082;110083;110084;110085;110086;110087;110088;110089;110090;110091;110092;110093;110094;110095;110096;110097;110098;110099;110100;110101;110102;110103;110104;110105;110106;110107;110108;110109;110110;110111;110112;110113;110114;110115;110116;110117;110118;110119;110120;110121;110122;110123	110095			59	
EQIVPKPEEEVAQKK	3	Unmodified	1750.9465	0.94651445	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	2	By MS/MS		By MS/MS	By MS/MS	2.62	0.484		3	5							1		5	2	28.509	28.259	2;3;4	0.00062931	23504	160511_QHF_FH_JSI12i_3	71.08	66.837			0.76666	0.73575	15.066	6	6	Median	0.94068	0.79909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88353	0.86065	20.627	3	3	Plateau	0.65758	0.66783	2.0184	2	2	Median	2330800000	1161900000	1169000000	166640000	71323000	95316000	0	0	0	1033400000	509160000	524280000	1130800000	581410000	549360000	13413	1143	12721	81545;81546;81547;81548;81549;81550;81551;81552	110124;110125;110126;110127;110128;110129;110130;110131;110132	110132			9	
EQIVTIGNKPVETIGFDSIMK	2	Unmodified	2318.2192	0.21918384	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	86.973	86.744	3	1.2819E-09	77023	160511_QHF_FH_JSI10i_2	107.74	85.088			1.0562	1.0637	2.9106	3	3	Median	NaN	NaN	NaN	0	0	Median	0.84625	1.0433	NaN	1	1	Median	1.2233	1.1048	NaN	1	1	Median	1.0562	1.0637	NaN	1	1	Median	168460000	82911000	85551000	0	0	0	40041000	19165000	20876000	33526000	17702000	15824000	94895000	46045000	48850000	13414	2712	12722	81553;81554;81555	110133;110134;110135	110134			3	
EQIVVDLSHPGVSEDDQVSR	0	Unmodified	2208.0659	0.065854319	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	58.741	58.16	2;3	6.5644E-15	52497	160511_QHF_FH_JSI10i_1	144.92	126.76			0.918	0.98304	11.764	7	7	Median	1.0309	0.84639	NaN	1	1	Median	0.84716	0.98549	0.35216	2	2	Median	0.97189	0.9566	8.2821	2	2	Median	1.0426	1.0551	20.67	2	2	Median	644990000	347160000	297830000	56401000	35111000	21290000	241530000	130020000	111510000	222670000	124550000	98124000	124380000	57473000	66910000	13415	440	12723	81556;81557;81558;81559;81560;81561;81562	110136;110137;110138;110139;110140;110141;110142;110143;110144	110143			9	
EQIYDVYR	0	Unmodified	1084.5189	0.51892433	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	3	1	3	42.076	38.894	2	0.00011874	35249	160511_QHF_FH_JSI11i_1	127.56	87.462			1.019	1.0706	8.9389	8	0	Median	1.208	0.98217	NaN	1	0	Median	1.0204	1.2236	10.119	3	0	Plateau	1.0855	1.0624	NaN	1	0	Median	0.9917	1.0788	10.55	3	0	Median	1615500000	848410000	767130000	293790000	133790000	160010000	478750000	270510000	208240000	463140000	240520000	222610000	379850000	203590000	176260000	13416	1481	12724	81563;81564;81565;81566;81567;81568;81569;81570	110145;110146;110147;110148;110149;110150;110151;110152;110153;110154;110155;110156;110157;110158;110159;110160;110161;110162;110163	110146			19	
EQIYKLAK	2	Acetyl (K)	1033.5808	0.5807963	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.7						3	3	1			2	2	3	48.499	38.631	2	0.0014135	21614	160513_QHF_FH_JSI10Kac_4	103.87	53.265			0.66454	0.73276	43.421	7	0	Median	NaN	NaN	NaN	0	0	Median	0.96771	1.1564	1.6719	2	0	Median	0.42741	0.42137	9.4359	2	0	Median	0.79989	0.88657	21.587	3	0	Plateau	177490000	109840000	67656000	0	0	0	50213000	26946000	23267000	73528000	51296000	22232000	53751000	31595000	22156000	13417	1995	12725	81571;81572;81573;81574;81575;81576;81577	110164;110165;110166;110167;110168;110169;110170;110171;110172	110165	2022		9	
EQLAALK	1	Unmodified	771.44905	0.44905385	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.13	4	2				2	3			2	3	3	3	27.625	23.169	2	0.0083872	13780	160513_QHF_FH_JSI12Kac_3	87.323	0			0.99873	0.98751	15.075	11	0	Median	1.2184	1.0244	13.251	2	0	Median	0.96831	1.1327	26.622	3	0	Median	1.0228	0.99764	6.9871	3	0	Median	0.83356	0.88631	8.8777	3	0	Median	3998100000	1916100000	2082000000	841170000	421100000	420060000	1136600000	552190000	584440000	820350000	409090000	411260000	1200000000	533670000	666280000	13418	5331	12726	81578;81579;81580;81581;81582;81583;81584;81585;81586;81587;81588	110173;110174;110175;110176;110177;110178;110179;110180;110181;110182;110183;110184	110182			12	
EQLAALKK	2	Unmodified	899.54402	0.54401687	5331	Q9UII2	ATPIF1	ATPase inhibitor, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		4	4							2		4	2	16.584	16.33	2	0.0047717	12792	160511_QHF_FH_JSI12i_3	86.953	30.943			1.2016	1.1788	136.12	8	8	Median	1.4005	1.2037	143.27	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2016	1.1788	127.16	4	4	Median	0.83794	0.85455	243.83	2	2	Median	1315800000	689400000	626430000	154680000	65848000	88837000	0	0	0	576590000	305560000	271030000	584550000	317990000	266560000	13419	5331	12727	81589;81590;81591;81592;81593;81594;81595;81596	110185;110186;110187;110188;110189;110190;110191;110192;110193	110191			9	
EQLAELQSGFVK	1	Unmodified	1347.7034	0.70343063	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			2	2	2	2	60.017	59.374	2	5.5035E-05	52714	160511_QHF_FH_JSI9i_1	108.9	83.344			0.90854	0.94955	24.134	7	6	Median	1.0443	0.87008	32.159	2	2	Median	0.8226	0.97516	34.579	2	2	Median	0.96052	0.913	33.53	2	2	Median	0.90854	0.94955	NaN	1	0	Median	590300000	325670000	264630000	173380000	95645000	77734000	165040000	93262000	71779000	157560000	83624000	73932000	94324000	53140000	41184000	13420	2270	12728	81597;81598;81599;81600;81601;81602;81603;81604	110194;110195;110196;110197;110198;110199;110200;110201	110200			7	
EQLAFQVEQVK	1	Unmodified	1317.6929	0.69286595	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.015	54.352	2	0.0034457	49382	160511_QHF_FH_JSI12i_1	68.536	41.749			0.76136	0.79189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76136	0.79189	NaN	1	1	Median	41233000	23059000	18174000	0	0	0	0	0	0	0	0	0	41233000	23059000	18174000	13421	481	12729	81605	110202	110202			1	
EQLAIAEFAR	0	Unmodified	1146.6033	0.60332266	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.41	4	4				1	3	3		3	5	4	3	66.569	61.256	2	2.1213E-07	55731	160511_QHF_FH_JSI12i_1	129.16	76.44			0.92144	0.93948	17.572	15	0	Plateau	1.1519	0.95782	12.485	3	0	Plateau	0.83079	1.0265	20.713	5	0	Plateau	0.72987	0.74561	20.38	4	0	Linear	0.87149	0.97683	1.8164	3	0	Median	3595700000	1969400000	1626300000	646870000	305760000	341110000	947640000	520360000	427280000	1063400000	622470000	440890000	937840000	520860000	416990000	13422	1132	12730	81606;81607;81608;81609;81610;81611;81612;81613;81614;81615;81616;81617;81618;81619;81620	110203;110204;110205;110206;110207;110208;110209;110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220;110221;110222;110223;110224;110225;110226;110227;110228	110208			26	
EQLAPLEK	1	Unmodified	926.5073	0.50729701	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.964	29.396	2	0.024076	26354	160511_QHF_FH_JSI12i_1	53.775	38.394			1.1695	1.2021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1695	1.2021	NaN	1	1	Median	101480000	52076000	49402000	0	0	0	0	0	0	0	0	0	101480000	52076000	49402000	13423	3635	12731	81621	110229	110229			1	
EQLAQAMFDHIPVGVGSK	1	Unmodified	1925.9669	0.96693232	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		8	8							2	4	6	4	82.442	81.796	2;3	6.4148E-41	72903	160511_QHF_FH_JSI11i_3	160.47	133.85			0.97051	0.98493	22.715	13	6	Median	0.83848	0.69856	42.741	2	0	Median	0.83695	1.0348	14.047	3	2	Median	0.9576	0.94319	13.954	4	2	Median	1.0348	1.1029	15.209	4	2	Median	3111700000	1550800000	1561000000	261970000	133660000	128310000	393440000	219830000	173620000	1322500000	651690000	670830000	1133800000	545590000	588230000	13424	5596	12732	81622;81623;81624;81625;81626;81627;81628;81629;81630;81631;81632;81633;81634;81635;81636;81637	110230;110231;110232;110233;110234;110235;110236;110237;110238;110239;110240;110241;110242;110243;110244;110245;110246;110247;110248;110249;110250;110251;110252;110253;110254;110255;110256;110257;110258;110259	110236			30	
EQLAQAVAR	0	Unmodified	984.53524	0.53524309	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	2	2					2			1	2	1	2	24.962	20.393	2	0.0010031	17944	160511_QHF_FH_JSI12i_1	85.67	23.124			0.9585	0.98552	22.436	4	1	Median	1.8484	1.5331	NaN	1	1	Median	0.77911	0.96759	NaN	1	0	Median	1.016	0.99708	NaN	1	0	Median	0.9043	0.9741	NaN	1	0	Median	83460000	37441000	46019000	34819000	14007000	20812000	29736000	14412000	15323000	12735000	5975700	6759500	6170200	3046000	3124200	13425	2147	12733	81638;81639;81640;81641;81642;81643	110260;110261;110262;110263;110264;110265	110260			6	
EQLDMAGAR	0	Unmodified	989.46003	0.46002924	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		20.862	20.733	2	0.0085188	17601	160511_QHF_FH_JSI9i_1	52.867	18.043			0.90629	0.87718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90629	0.87718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78485000	41999000	36486000	0	0	0	0	0	0	78485000	41999000	36486000	0	0	0	13426	2516	12734	81644;81645	110266;110267	110267			2	
EQLDNQLDAYMSK	1	Unmodified	1553.7032	0.70317264	5605	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.865	58.217	2	1.4765E-66	52881	160511_QHF_FH_JSI12i_1	231.67	213			1.1816	1.2974	13.004	4	0	Linear	1.1829	0.97556	NaN	1	0	Median	0.88526	1.0541	NaN	1	0	Median	1.2833	1.2586	NaN	1	0	Median	1.1803	1.2648	NaN	1	0	Median	863140000	370100000	493040000	156590000	67841000	88749000	181950000	89205000	92750000	246460000	106960000	139500000	278130000	106090000	172040000	13427	5605	12735	81646;81647;81648;81649	110268;110269;110270;110271;110272;110273	110271			6	
EQLDPDELETITMHK	1	Unmodified	1797.8455	0.84547978	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	2	1	69.392	68.768	2;3	5.7782E-05	62194	160511_QHF_FH_JSI10i_1	83.966	75.401			0.98636	0.92833	12.002	5	0	Median	1.1188	0.9293	15.498	2	0	Median	0.77098	0.89764	NaN	1	0	Median	0.95528	0.92833	NaN	1	0	Median	1.0694	1.1275	NaN	1	0	Median	707690000	376110000	331580000	128990000	62615000	66378000	148910000	86285000	62621000	208520000	106980000	101540000	221270000	120240000	101040000	13428	5135	12736	81650;81651;81652;81653;81654;81655	110274;110275;110276;110277;110278;110279	110278			5	
EQLDSSNSTIAILQTEK	1	Unmodified	1875.9426	0.94255129	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	63.501	62.836	2;3	1.3482E-30	56948	160511_QHF_FH_JSI11i_1	225.67	202.43			1.009	1.0023	15.544	7	2	Median	1.0548	0.87453	2.1887	2	0	Median	0.82805	1.0023	NaN	1	1	Median	0.88282	0.85503	28.959	2	1	Median	1.0004	1.0565	3.2019	2	0	Median	561210000	272050000	289160000	150460000	75985000	74473000	80419000	40167000	40252000	159580000	80500000	79082000	170750000	75396000	95358000	13429	446	12737	81656;81657;81658;81659;81660;81661;81662	110280;110281;110282;110283;110284;110285;110286	110280			7	
EQLDTETSTTQSETIQTAASLLASQK	1	Unmodified	2780.3563	0.35634184	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.999	87.522	3	0.0049302	79698	160511_QHF_FH_JSI12i_1	32.507	29.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13430	1724	12738	81663	110287	110287			1	
EQLEAAKPEPVIEEVDLANLAPR	1	Unmodified	2530.3279	0.32788266	3759	Q8WUD4	CCDC12	Coiled-coil domain-containing protein 12	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5									4	2	2	87.866	87.36	3	5.2763E-20	75476	160511_QHF_FH_JSI12i_2	145.13	132.33			0.92578	0.89192	21.769	7	4	Median	NaN	NaN	NaN	0	0	Median	0.93993	1.0746	25.437	3	2	Median	0.90552	0.88799	0.62328	2	0	Median	0.89128	0.93141	37.97	2	2	Median	140930000	71490000	69440000	0	0	0	59758000	30975000	28784000	46127000	25727000	20400000	35044000	14788000	20256000	13431	3759	12739	81664;81665;81666;81667;81668;81669;81670;81671	110288;110289;110290;110291;110292;110293;110294	110288			7	
EQLEAEAQALRQELER	0	Unmodified	1911.965	0.96501806	3969	Q96AQ6	PBXIP1	Pre-B-cell leukemia transcription factor-interacting protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	72.694	72.4	3	0.022682	62769	160511_QHF_FH_JSI12i_3	32.995	15.506			1.5468	1.5425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5468	1.5425	NaN	1	1	Median	26619000	10963000	15656000	0	0	0	0	0	0	0	0	0	26619000	10963000	15656000	13432	3969	12740	81672	110295	110295			1	
EQLEEEEEAK	1	Unmodified	1232.5408	0.54084156	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.968	14.539	2	0.0043098	12247	160511_QHF_FH_JSI12i_1	57.785	38.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13433	1436	12741	81673	110296	110296			1	
EQLEEEEEAKHNLEK	2	Acetyl (K)	1895.8749	0.87486565	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.43	41.715	3	0.0021117	23149	160513_QHF_FH_JSI11Kac_5	54.237	44.138			0.32583	0.3273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32583	0.3273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8193800	6582800	1611000	0	0	0	0	0	0	8193800	6582800	1611000	0	0	0	13434	1436	12742	81674	110297;110298	110297	1401;1402		2	
EQLELFQNIRPLFINK	1	Unmodified	2001.1047	0.10474643	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			100.84	100.63	3	0.003953	81592	160511_QHF_FH_JSI9i_3	52.862	19.02			0.73387	0.60289	NaN	1	1	Median	0.73387	0.60289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28859000	16302000	12557000	28859000	16302000	12557000	0	0	0	0	0	0	0	0	0	13435	4559	12743	81675;81676	110299;110300	110300			2	
EQLEQEK	1	Unmodified	902.43453	0.434526	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	7.6304	7.2631	2	0.0087354	4949	160511_QHF_FH_JSI11i_1	71.379	3.3986			1.1136	1.0527	23.194	4	2	Median	1.1474	0.96052	NaN	1	0	Median	0.89868	1.0505	38.026	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0808	1.1537	NaN	1	0	Median	1411800000	712530000	699310000	345570000	150290000	195270000	715180000	377190000	337990000	0	0	0	351090000	185040000	166050000	13436	2084	12744	81677;81678;81679;81680;81681	110301;110302;110303;110304;110305;110306	110301			6	
EQLFAVSHDK	1	Unmodified	1172.5826	0.58258722	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		28.615	28.246	2	0.0073682	23798	160511_QHF_FH_JSI11i_2	61.213	16.076			4.5285	4.4527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5285	4.4527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11934000	1532500	10401000	0	0	0	0	0	0	11934000	1532500	10401000	0	0	0	13437	2900	12745	81682	110307	110307			1	
EQLFSSLLR	0	Unmodified	1091.5975	0.597509	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	73.42	72.528	2	0.032556	64477	160511_QHF_FH_JSI10i_2	39.622	16.551			0.97399	1.0802	12.253	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80262	0.99833	NaN	1	0	Median	1.1819	1.1232	NaN	1	0	Median	0.78605	0.87912	NaN	1	0	Median	38755000	22313000	16442000	0	0	0	14243000	9094400	5148200	15492000	8543400	6948400	9020700	4675000	4345700	13438	2212	12746	81683;81684;81685	110308	110308			1	
EQLGEEIDSK	1	Unmodified	1146.5404	0.54044763	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.993	25.961	2	3.4611E-11	22873	160511_QHF_FH_JSI11i_1	150.04	118.97			1.0401	1.0736	13.206	7	3	Median	1.4484	1.1742	NaN	1	0	Median	0.94628	1.1142	5.2432	2	1	Median	1.0611	1.0487	3.02	2	1	Median	1.1775	1.2624	25.374	2	1	Median	1969800000	973950000	995800000	418370000	171350000	247030000	530900000	294390000	236510000	452690000	231390000	221300000	567790000	276830000	290960000	13439	4940	12747	81686;81687;81688;81689;81690;81691;81692	110309;110310;110311;110312;110313;110314;110315;110316	110309			8	
EQLGPVTQEFWDNLEK	1	Unmodified	1931.9265	0.92650729	58	CON__P15497;P02647	APOA1	Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I	yes	no	0	0	0	0			By MS/MS		2	0		1										1		94.384	93.988	2	9.3925E-06	82549	160511_QHF_FH_JSI11i_2	117.92	95.87		+	1.904	1.7993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.904	1.7993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15947000	5817100	10129000	0	0	0	0	0	0	15947000	5817100	10129000	0	0	0	13440	58	12748	81693	110317	110317			1	
EQLGYIVFSGPR	0	Unmodified	1364.7089	0.70885036	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.8	1	6						4	3	2	4	4	4	75.489	69.507	2	2.3441E-16	33913	160513_QHF_FH_JSI10Kac_5	169.52	127.41			1.0724	1.1177	11.054	12	7	Median	1.249	1.0687	6.7755	2	1	Median	0.94815	1.1353	8.0547	3	2	Median	1.0656	1.0567	6.0264	3	2	Plateau	1.0179	1.1278	16.536	4	2	Median	977530000	528620000	448910000	115170000	56880000	58294000	253810000	135710000	118100000	295510000	157840000	137680000	313030000	178190000	134840000	13441	1060	12749	81694;81695;81696;81697;81698;81699;81700;81701;81702;81703;81704;81705;81706;81707	110318;110319;110320;110321;110322;110323;110324;110325;110326;110327;110328;110329;110330;110331;110332;110333	110332			16	
EQLLSHK	1	Unmodified	853.46577	0.46576654	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.292	9.6385	2	0.043439	7213	160511_QHF_FH_JSI12i_2	45.68	17.573			0.80413	0.86554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80413	0.86554	NaN	1	0	Median	17568000	10036000	7531600	0	0	0	0	0	0	0	0	0	17568000	10036000	7531600	13442	610	12750	81708	110334	110334			1	
EQLMFPFHFVDR	0	Unmodified	1564.7497	0.74966932	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	89.864	89.384	3	0.0016683	77428	160511_QHF_FH_JSI12i_3	51.546	46.98			0.69703	0.67792	23.542	5	2	Median	0.86435	0.76537	NaN	1	1	Median	0.43343	0.55709	NaN	1	1	Median	0.69703	0.67792	NaN	1	0	Median	0.74688	0.77903	37.152	2	0	Median	74086000	41604000	32483000	5124400	3179000	1945400	12582000	9136700	3445200	8786900	5578400	3208500	47593000	23710000	23884000	13443	2115	12751	81709;81710;81711;81712;81713;81714	110335;110336;110337;110338;110339;110340;110341	110341			7	
EQLMREEAEQK	1	Unmodified	1389.6558	0.65582851	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	14.621	14.297	2;3	5.8185E-05	11204	160511_QHF_FH_JSI11i_2	92.19	76.434			1.2464	1.2858	37.046	9	5	Median	1.0504	0.88063	NaN	1	1	Median	1.9606	2.4249	0.65662	2	2	Median	1.1656	1.0961	30.677	3	1	Median	1.2464	1.2858	9.6789	3	1	Median	1818700000	869100000	949580000	232410000	137910000	94497000	255650000	114440000	141210000	591870000	219120000	372760000	738750000	397630000	341120000	13444	2536	12752	81715;81716;81717;81718;81719;81720;81721;81722;81723	110342;110343;110344;110345;110346;110347;110348;110349;110350	110346			9	
EQLMREEAEQK	1	Oxidation (M)	1405.6507	0.65074314	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	1	1		By MS/MS			2	0		1									1			14.931	14.302	3	0.026529	11854	160511_QHF_FH_JSI10i_2	45.764	27.14			0.59992	0.75116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59992	0.75116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95343000	51418000	43925000	0	0	0	95343000	51418000	43925000	0	0	0	0	0	0	13445	2536	12752	81724	110351	110351			1	
EQLMTVLQAGK	1	Unmodified	1216.6486	0.64855829	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.511	57.021	2	0.00017241	51412	160511_QHF_FH_JSI10i_1	82.417	62.63			0.64167	0.67216	13.292	3	0	Median	NaN	NaN	NaN	0	0	Median	0.53391	0.623	NaN	1	0	Median	0.82632	0.80686	NaN	1	0	Median	0.64167	0.67216	NaN	1	0	Median	141360000	92067000	49294000	0	0	0	51613000	34541000	17072000	54115000	34564000	19551000	35633000	22962000	12671000	13446	4361	12753	81725;81726;81727	110352;110353;110354;110355	110355			4	
EQLNEYK	1	Unmodified	922.43961	0.43961137	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.881	13.467	2	0.010805	11236	160511_QHF_FH_JSI12i_1	73.248	7.1752			1.2038	1.2623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2038	1.2623	NaN	1	0	Median	137410000	76657000	60749000	0	0	0	0	0	0	0	0	0	137410000	76657000	60749000	13447	2636	12754	81728	110356	110356			1	
EQLNRIEEGLDQINK	1	Unmodified	1797.9221	0.92209062	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	55.562	55.32	3	0.00080026	47474	160511_QHF_FH_JSI12i_3	69.314	50.902			1.1354	1.1615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1354	1.1615	NaN	1	1	Median	67499000	33666000	33834000	0	0	0	0	0	0	0	0	0	67499000	33666000	33834000	13448	101	12755	81729	110357	110357			1	
EQLPESAYMHQLLGLNLLFLLSQNR	0	Oxidation (M)	2942.5324	0.53241291	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.399	88.981	3	2.0952E-78	50332	160513_QHF_FH_JSI11Kac_6	212.38	193.66			1.1307	1.1553	16.558	4	0	Median	1.1079	0.9429	NaN	1	0	Median	1.1541	1.3567	NaN	1	0	Median	1.3503	1.262	NaN	1	0	Median	0.99785	1.0577	NaN	1	0	Median	861500000	354140000	507350000	122560000	48616000	73947000	243140000	100180000	142960000	188360000	74172000	114190000	307430000	131180000	176250000	13449	1627	12756	81730;81731;81732;81733	110358;110359;110360;110361;110362;110363	110358		1298	6	
EQLPESAYMHQLLGLNLLFLLSQNR	0	Unmodified	2926.5375	0.53749828	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.615	90.188	3	1.6209E-110	51381	160513_QHF_FH_JSI9Kac_6	232	194.44			1.1068	1.1067	9.5233	4	0	Median	1.1747	1.0001	NaN	1	0	Median	1.0606	1.2608	NaN	1	0	Median	1.1434	1.0963	NaN	1	0	Median	1.0714	1.1172	NaN	1	0	Median	4917500000	2242600000	2674900000	1504300000	664660000	839670000	2103500000	978150000	1125400000	583310000	253130000	330180000	726320000	346670000	379650000	13450	1627	12756	81734;81735;81736;81737	110364;110365;110366;110367	110365			4	
EQLPIFK	1	Unmodified	873.496	0.49600404	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	54.128	53.316	2	0.0093343	47804	160511_QHF_FH_JSI10i_1	79.597	33.879			0.89664	0.94578	6.8824	8	0	Median	1.1135	0.94709	4.6212	2	0	Median	0.81217	0.99142	13.727	2	0	Median	0.94572	0.93989	6.9971	2	0	Median	0.86397	0.9377	5.6387	2	0	Median	923220000	485730000	437490000	170810000	86033000	84775000	238520000	130710000	107810000	308540000	160580000	147960000	205350000	108400000	96948000	13451	2144	12757	81738;81739;81740;81741;81742;81743;81744;81745	110368;110369;110370;110371;110372;110373;110374;110375;110376;110377;110378;110379;110380;110381;110382;110383;110384;110385	110375			18	
EQLQALIPYVLNPSK	1	Unmodified	1711.9509	0.95087155	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	99.097	98.981	2;3	2.3049E-07	90072	160511_QHF_FH_JSI12i_1	89.013	66.815			0.88232	0.95362	43.566	8	3	Median	1.1748	0.97831	NaN	1	0	Median	0.60249	0.71682	63.806	3	2	Median	0.98796	0.97032	6.0711	2	0	Median	0.92215	0.98635	14.808	2	1	Median	343600000	210910000	132690000	25332000	9585000	15747000	183980000	134730000	49247000	73074000	35927000	37147000	61215000	30665000	30550000	13452	3036	12758	81746;81747;81748;81749;81750;81751;81752;81753;81754;81755;81756	110386;110387;110388;110389;110390;110391;110392;110393;110394;110395	110389			10	
EQLQQEIEDWSK	1	Unmodified	1531.7155	0.71545188	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	66.786	66.163	2	7.6287E-05	60258	160511_QHF_FH_JSI12i_1	105.65	81.306			1.087	1.1252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.087	1.1252	NaN	1	1	Median	46559000	21854000	24705000	0	0	0	0	0	0	0	0	0	46559000	21854000	24705000	13453	2899	12759	81757	110396	110396			1	
EQLQSVTTNSGYTR	0	Unmodified	1582.7587	0.75871368	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	30.087	29.491	2	1.8765E-06	26486	160511_QHF_FH_JSI12i_1	131.06	97.835			1.3122	1.2834	8.0041	4	0	Median	1.3462	1.1136	NaN	1	0	Median	1.0996	1.2828	NaN	1	0	Median	1.315	1.2839	NaN	1	0	Median	1.3094	1.3366	NaN	1	0	Median	221820000	92527000	129300000	53735000	27292000	26443000	47984000	21017000	26967000	54068000	19509000	34559000	66036000	24708000	41328000	13454	2320	12760	81758;81759;81760;81761;81762	110397;110398;110399;110400;110401;110402;110403;110404;110405;110406	110401			10	
EQLQTEQDAPAATR	0	Unmodified	1556.7431	0.74306362	4147	Q96K19	RNF170	E3 ubiquitin-protein ligase RNF170	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	20.61	20.487	2	9.3424E-08	17619	160511_QHF_FH_JSI11i_1	98.803	61.458			0.84939	0.82567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84939	0.82567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13525000	6616400	6908900	0	0	0	0	0	0	13525000	6616400	6908900	0	0	0	13455	4147	12761	81763;81764;81765;81766;81767;81768	110407;110408;110409;110410;110411;110412	110408			6	
EQLRDISSIGLK	1	Unmodified	1357.7565	0.75652884	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	4.75		7	3					2		3	2	4	3	53.236	50.863	2;3	1.0656E-06	43539	160511_QHF_FH_JSI12i_3	143.97	90.218			1.1624	1.1261	24.31	12	0	Median	1.6787	1.4288	26.981	3	0	Median	0.93331	1.1261	0.58221	2	0	Median	1.1624	1.1289	20.181	4	0	Median	1.5624	1.3234	37.875	3	0	Plateau	1568100000	692850000	875260000	229090000	100910000	128180000	331970000	141320000	190640000	350680000	147940000	202730000	656370000	302670000	353700000	13456	3343	12762	81769;81770;81771;81772;81773;81774;81775;81776;81777;81778;81779;81780	110413;110414;110415;110416;110417;110418;110419;110420;110421;110422;110423;110424;110425;110426	110426			14	
EQLSAERQEQIK	1	Unmodified	1457.7474	0.74742071	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	16.647	16.106	3	5.2171E-05	12992	160511_QHF_FH_JSI11i_2	85.554	45.636			1.0186	1.0672	17.19	5	0	Median	1.066	0.91978	NaN	1	0	Median	0.86661	1.0672	NaN	1	0	Median	1.4154	1.4628	NaN	1	0	Median	0.99698	1.0542	2.0643	2	0	Median	355270000	174140000	181140000	56047000	26628000	29418000	82314000	39026000	43288000	92734000	38964000	53770000	124180000	69516000	54660000	13457	5479	12763	81781;81782;81783;81784;81785	110427;110428;110429;110430;110431;110432;110433;110434	110431			8	
EQLSDMMMINK	1	Unmodified	1338.5982	0.59817898	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	64.705	63.913	2	3.2248E-30	56852	160511_QHF_FH_JSI9i_1	195.36	141.39			0.96367	0.99605	10.267	7	1	Median	1.1404	0.95746	7.3306	2	0	Median	0.78603	0.93855	9.4714	2	0	Median	0.96367	0.93175	NaN	1	0	Median	1.028	1.0939	13.249	2	1	Median	2271300000	1187900000	1083400000	509690000	237540000	272150000	546620000	308430000	238190000	637170000	367000000	270170000	577820000	274950000	302870000	13458	1600	12764	81786;81787;81788;81789;81790;81791;81792	110435;110436;110437;110438;110439;110440;110441;110442;110443;110444;110445;110446;110447;110448;110449;110450	110447			15	
EQLSDMMMINK	1	Oxidation (M)	1354.5931	0.5930936	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	47.845	47.308	2	0.0053694	42687	160511_QHF_FH_JSI11i_1	62.823	48.156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13459	1600	12764	81793;81794	110451;110452	110451		1269	2	
EQLSDMMVLDKQK	2	2 Oxidation (M)	1595.7535	0.75349365	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	2	1		By MS/MS		By MS/MS	16	0									2		1		1	82.957	75.438	3	0.028564	40183	160513_QHF_FH_JSI12Kac_6	34	27.119			0.82397	0.90716	4.3831	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7605	0.87947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89273	0.93572	NaN	1	0	Median	114200000	57675000	56530000	0	0	0	81884000	40785000	41099000	0	0	0	32321000	16890000	15431000	13460	3340	12765	81795;81796	110453	110453			0	
EQLSGSPWILLR	0	Unmodified	1397.7667	0.76669959	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.624	85.953	2	0.00024111	75612	160511_QHF_FH_JSI11i_2	89.548	71.28			1.3622	1.2162	14.426	4	0	Linear	1.2076	1.0072	NaN	1	0	Median	1.1075	1.3606	NaN	1	0	Median	1.3479	1.3291	NaN	1	0	Median	1.0225	1.1129	NaN	1	0	Median	150080000	75993000	74085000	35331000	18402000	16929000	34594000	18527000	16067000	54791000	24996000	29795000	25361000	14068000	11293000	13461	3583	12766	81797;81798;81799;81800	110454;110455;110456	110456			3	
EQLSSANHSLQLASQIQK	1	Unmodified	1981.0229	0.022867292	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	48.096	47.375	3	6.6776E-08	40448	160511_QHF_FH_JSI12i_3	123.19	103.1			0.86903	0.90861	28.046	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86903	0.90861	NaN	1	1	Median	0.74415	0.77432	37.452	2	0	Median	102570000	57958000	44614000	0	0	0	0	0	0	21933000	13035000	8897600	80639000	44923000	35717000	13462	1489;2481	12767	81801;81802;81803	110457;110458;110459	110459			3	
EQLTEEAR	0	Unmodified	974.46689	0.46688876	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	14.095	9.4832	2	0.0034677	8637	160511_QHF_FH_JSI9i_1	72.325	37.076			0.92494	0.92369	8.8721	5	1	Median	1.0509	0.85462	NaN	1	0	Median	0.7897	0.92369	NaN	1	0	Median	0.91301	0.90155	NaN	1	1	Median	0.95617	1.0265	7.033	2	0	Median	611270000	305440000	305840000	298240000	144250000	153990000	4509700	2704500	1805200	8481500	4908300	3573200	300040000	153570000	146470000	13463	5251	12768	81804;81805;81806;81807;81808	110460;110461;110462;110463;110464	110462			5	
EQLTEEAREGIK	1	Unmodified	1401.71	0.70997257	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1								2	2	4	26.644	25.941	2;3	0.0015571	21722	160511_QHF_FH_JSI11i_2	90.685	62.287			0.79202	0.84622	60.353	6	2	Median	NaN	NaN	NaN	0	0	Median	0.93804	1.1264	NaN	1	0	Median	0.98264	1.0012	58.308	2	0	Median	0.62812	0.68088	69.144	3	2	Median	420100000	239170000	180930000	0	0	0	26037000	17591000	8445900	242540000	122080000	120460000	151520000	99500000	52020000	13464	5251	12769	81809;81810;81811;81812;81813;81814;81815;81816	110465;110466;110467;110468;110469;110470;110471	110468			7	
EQLTPSQIMSLEK	1	Unmodified	1502.765	0.76504461	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.523	67.955	2	2.287E-22	61508	160511_QHF_FH_JSI10i_1	178.67	147.59			1.0115	0.75292	14.822	4	3	Linear	1.1993	0.98842	NaN	1	1	Median	0.6377	0.75434	NaN	1	0	Median	1.0305	1.0065	NaN	1	1	Median	0.9929	1.0404	NaN	1	1	Median	1379200000	719340000	659860000	318300000	153150000	165150000	405410000	227630000	177770000	350160000	187850000	162310000	305330000	150710000	154630000	13465	2144	12770	81817;81818;81819;81820	110472;110473;110474;110475;110476	110474			5	
EQLVDQGIMPPLK	1	Unmodified	1466.7803	0.78030075	5399	Q9ULH7	MKL2	MKL/myocardin-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	70.51	69.916	2	0.005598	63662	160511_QHF_FH_JSI12i_1	79.82	36.538			0.85927	0.84803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85927	0.84803	NaN	1	0	Median	12240000	5672000	6568100	0	0	0	0	0	0	0	0	0	12240000	5672000	6568100	13466	5399	12771	81821	110477	110477			0	
EQLWLANEGLITR	0	Unmodified	1541.8202	0.82019173	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.29	1	4	2					1		3	2	2	1	79.86	78.987	2	1.1427E-52	68278	160511_QHF_FH_JSI12i_2	212.9	190.57			1.1394	1.1176	7.492	7	2	Median	1.2084	1.0294	7.86	3	1	Plateau	0.87488	1.0463	1.016	2	1	Median	1.1394	1.1699	NaN	1	0	Median	1.1169	1.2378	NaN	1	0	Median	1633800000	794800000	838990000	281260000	129930000	151330000	458230000	249890000	208350000	492980000	214720000	278260000	401320000	200270000	201060000	13467	1600	12772	81822;81823;81824;81825;81826;81827;81828;81829	110478;110479;110480;110481;110482;110483;110484;110485;110486;110487;110488;110489;110490;110491	110479			14	
EQMDNAVYTFETLLHQELGK	1	Unmodified	2365.126	0.12601173	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.91	101.8	3	5.0244E-27	87677	160511_QHF_FH_JSI12i_2	183.26	174.87			0.87606	0.95295	4.4584	4	0	Median	1.0991	0.94718	NaN	1	0	Median	0.82047	1.0106	NaN	1	0	Median	0.9335	0.95876	NaN	1	0	Median	0.82215	0.90681	NaN	1	0	Median	1719500000	897330000	822170000	291310000	143960000	147360000	345430000	192000000	153430000	495320000	256770000	238550000	587450000	304610000	282830000	13468	4260	12773	81830;81831;81832;81833	110492;110493;110494	110492			3	
EQMDQISESNHLIHLSNTNNVK	1	Unmodified	2550.2133	0.21326361	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			3									2	1	51.774	51.696	3;4	7.2208E-10	45747	160511_QHF_FH_JSI11i_3	101.29	91.027			0.97404	0.99045	16.086	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90064	0.85495	18.404	2	0	Median	0.97404	1.0071	NaN	1	0	Median	180350000	106800000	73549000	0	0	0	0	0	0	105420000	57712000	47706000	74936000	49092000	25844000	13469	5024	12774	81834;81835;81836	110495;110496;110497	110496			3	
EQMGQMLTR	0	Unmodified	1092.5056	0.50559922	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		29.837	29.463	2	0.047412	24851	160511_QHF_FH_JSI11i_2	44.753	18.859			2.2757	2.2576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2757	2.2576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41079000	15424000	25655000	0	0	0	0	0	0	41079000	15424000	25655000	0	0	0	13470	2800	12775	81837	110498	110498			1	
EQMIDLQNLLTTQSPSVK	1	Unmodified	2044.0511	0.051055878	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		94.571	94.053	3	0.00015826	83473	160511_QHF_FH_JSI9i_1	73.11	63.946			1.0138	0.88308	10.397	2	1	Median	1.1835	0.95045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8685	0.82049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35300000	17853000	17447000	12110000	3908200	8201700	0	0	0	23190000	13945000	9245300	0	0	0	13471	4472	12776	81838;81839	110499;110500;110501	110501			3	
EQMIQVQDSPEPDQLLATLEK	1	Unmodified	2411.189	0.18900592	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	99.52	99.42	3	0.00086994	90210	160511_QHF_FH_JSI11i_1	42.746	28.436			1.1989	1.2569	25.917	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67253	0.77976	NaN	1	1	Median	1.2148	1.1791	NaN	1	0	Median	1.1989	1.2569	NaN	1	0	Median	54056000	28384000	25673000	0	0	0	17121000	10470000	6650500	15666000	7327500	8338400	21270000	10586000	10684000	13472	5460	12777	81840;81841;81842	110502;110503;110504	110502			3	
EQMQPTHPIR	0	Unmodified	1235.6081	0.60809046	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.88	1	8	5					3		2	3	7	5	14.708	12.794	2;3	6.4193E-11	10613	160511_QHF_FH_JSI12i_2	166.07	103.52			1.0778	1.0357	14.471	17	2	Median	1.1679	0.98352	4.926	2	0	Median	0.82074	1.0345	6.2061	3	1	Plateau	1.0778	1.0969	16.337	7	1	Median	1.1721	1.2457	14.418	5	0	Median	2383800000	1155600000	1228200000	308620000	162100000	146520000	485920000	264420000	221500000	889260000	413500000	475760000	700020000	315590000	384430000	13473	2224	12778	81843;81844;81845;81846;81847;81848;81849;81850;81851;81852;81853;81854;81855;81856;81857;81858;81859	110505;110506;110507;110508;110509;110510;110511;110512;110513;110514;110515;110516;110517;110518;110519;110520;110521;110522;110523;110524;110525;110526;110527;110528;110529	110510			25	
EQMQPTHPIR	0	Oxidation (M)	1251.603	0.60300508	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	12.795	12.451	2;3	0.0030911	10924	160511_QHF_FH_JSI10i_2	57.348	46.825			1.0506	1.0587	26.503	6	3	Median	1.4391	1.2634	NaN	1	0	Median	0.72604	0.90263	NaN	1	1	Median	0.83105	0.84058	31.473	2	1	Median	1.1807	1.237	20.856	2	1	Median	340820000	177330000	163490000	13289000	7164400	6124900	68468000	37721000	30747000	140070000	72419000	67649000	118990000	60026000	58966000	13474	2224	12778	81860;81861;81862;81863;81864;81865;81866	110530;110531;110532;110533;110534;110535	110534		1849	6	
EQMSLVHVGTEAFPISDESMIK	1	Unmodified	2447.1712	0.17124737	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.239	87.683	3	0.061251	77047	160511_QHF_FH_JSI11i_2	12.193	3.8027			0.64342	0.64144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64342	0.64144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30686000	21047000	9638100	0	0	0	0	0	0	30686000	21047000	9638100	0	0	0	13475	1311	12779	81867	110536	110536			1	
EQMYNILMWIHDNYRDPESETDNDSQEIFK	1	Unmodified	3759.6457	0.6457407	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	91.938	83.759	3;4	0	46586	160513_QHF_FH_JSI9Kac_6	356.71	341.89			1.0045	0.96827	16.437	7	1	Median	1.1167	0.95727	1.6146	2	0	Median	0.93976	1.1141	3.0095	2	0	Median	1.0119	0.96298	NaN	1	0	Median	0.80831	0.85156	29.719	2	1	Median	5212300000	2643700000	2568600000	851880000	400800000	451080000	2670400000	1371700000	1298700000	749390000	346760000	402630000	940610000	524370000	416240000	13476	2094	12780	81868;81869;81870;81871;81872;81873;81874	110537;110538;110539;110540;110541;110542;110543;110544;110545;110546;110547;110548;110549	110542			13	
EQMYNILMWIHDNYRDPESETDNDSQEIFK	1	Oxidation (M)	3775.6407	0.64065532	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	90.118	82.326	4	1.6036E-106	44516	160513_QHF_FH_JSI9Kac_6	223.61	215.06			0.96212	1.0147	12.309	5	1	Median	1.205	1.0384	NaN	1	0	Median	0.69121	0.82827	4.0985	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97679	1.03	2.1142	2	1	Median	644220000	374710000	269510000	117120000	66236000	50888000	374870000	235970000	138900000	0	0	0	152230000	72500000	79725000	13477	2094	12780	81875;81876;81877;81878;81879	110550;110551;110552;110553;110554;110555	110550		1760;1761	6	
EQNIVFNAETYSNLIK	1	Unmodified	1881.9472	0.94724273	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								3	3	3	4	87.328	86.774	2;3	9.6922E-52	79091	160511_QHF_FH_JSI12i_1	214.42	170.82			0.90937	1.0479	46.195	13	4	Plateau	1.2795	1.0479	19.522	3	1	Median	0.82099	0.9759	25.018	3	1	Median	0.97715	0.95679	65.155	3	1	Median	1.0365	1.1345	65.597	4	1	Median	1556500000	650530000	906000000	199960000	71713000	128250000	403890000	204820000	199070000	480180000	183140000	297040000	472500000	190860000	281640000	13478	1544	12781	81880;81881;81882;81883;81884;81885;81886;81887;81888;81889;81890;81891;81892	110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567;110568;110569;110570;110571;110572;110573;110574;110575;110576;110577;110578	110568			23	
EQNKPDSSPLYIQNPFETSLNISK	2	Unmodified	2748.3606	0.36063936	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	88.415	87.922	3	4.0636E-06	79690	160511_QHF_FH_JSI10i_1	63.906	60.94			0.78741	0.79307	21.64	5	2	Median	NaN	NaN	NaN	0	0	Median	0.5249	0.59987	NaN	1	0	Median	0.71388	0.70019	17.615	2	1	Median	0.88527	0.92139	11.294	2	1	Median	104260000	67368000	36890000	0	0	0	26504000	16469000	10036000	45622000	33040000	12582000	32132000	17859000	14273000	13479	5053	12782	81893;81894;81895;81896;81897	110579;110580;110581;110582;110583;110584	110582			6	
EQNNDSQLK	1	Unmodified	1074.4942	0.49416614	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	5.6276	3.6258	2	1.1048E-05	3121	160511_QHF_FH_JSI11i_1	111.06	61.702			1.0397	1.0643	4.2129	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89395	1.0449	NaN	1	0	Median	1.1316	1.1095	4.7821	2	1	Median	0.99142	1.0561	NaN	1	0	Median	1049800000	537070000	512770000	0	0	0	347690000	194500000	153190000	361580000	175000000	186570000	340570000	167570000	173010000	13480	679	12783	81898;81899;81900;81901	110585;110586;110587;110588;110589	110585			5	
EQNSALPTSSQDEELMEVVEK	1	Unmodified	2362.0846	0.08460043	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	79.188	78.717	2;3	1.2146E-17	71575	160511_QHF_FH_JSI11i_1	174.52	163.26			0.84	0.84123	6.587	8	0	Median	1.0113	0.84428	5.9448	2	0	Median	0.75312	0.89563	10.48	2	0	Median	0.87983	0.83428	7.9354	2	0	Median	0.80014	0.82637	4.1385	2	0	Median	365850000	186760000	179080000	69062000	36352000	32711000	92101000	50176000	41926000	98472000	43705000	54767000	106210000	56533000	49680000	13481	5474	12784	81902;81903;81904;81905;81906;81907;81908;81909;81910	110590;110591;110592;110593;110594;110595;110596;110597;110598;110599;110600;110601;110602;110603;110604;110605;110606	110590			17	
EQNSPIYISR	0	Unmodified	1205.6041	0.60405094	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	no	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		32.714	31.962	2	0.0028063	27999	160511_QHF_FH_JSI9i_1	72.006	20.01			0.33272	0.29774	1.967	2	2	Median	0.37044	0.30191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29885	0.29363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	519790000	426790000	92995000	276160000	230740000	45417000	0	0	0	243630000	196050000	47578000	0	0	0	13482	5010	12785	81911;81912	110607;110608	110608			2	
EQNVPVPK	1	Unmodified	909.49198	0.4919813	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.682	19.178	2	0.0071383	16253	160511_QHF_FH_JSI11i_1	60.436	29.718			0.72448	0.73677	11.323	4	0	Median	1.0166	0.84707	NaN	1	0	Median	0.59443	0.69189	NaN	1	0	Median	0.68132	0.66226	NaN	1	0	Median	0.77037	0.78457	NaN	1	0	Median	361300000	195430000	165860000	85761000	40914000	44847000	105060000	59124000	45935000	87405000	55171000	32233000	83071000	40222000	42849000	13483	4092	12786	81913;81914;81915;81916	110609;110610;110611;110612	110609			4	
EQPAFQYSSHVSLQASSGHMWGTFR	0	Unmodified	2837.298	0.29799629	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.85	68.34	4	2.8094E-09	37234	160513_QHF_FH_JSI10Kac_6	130.01	116.82			1.0256	1.2305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0256	1.2305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42486000	28326000	14160000	0	0	0	42486000	28326000	14160000	0	0	0	0	0	0	13484	5534	12787	81917	110613	110613			1	
EQPEKEPELQQYVPQLQNNTILR	1	Unmodified	2793.4297	0.42972197	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	80.788	80.283	3	4.233E-11	69614	160511_QHF_FH_JSI12i_3	105.51	100.6			0.88887	0.92491	10.759	7	0	Median	1.1887	0.993	NaN	1	0	Median	0.74359	0.89725	7.8286	2	0	Median	0.86864	0.86984	8.6811	2	0	Median	0.95839	1.0156	15.702	2	0	Median	459050000	231210000	227840000	67988000	31098000	36890000	115950000	63541000	52408000	140710000	71440000	69275000	134390000	65131000	69263000	13485	2502	12788	81918;81919;81920;81921;81922;81923;81924	110614;110615;110616;110617;110618;110619;110620;110621;110622;110623;110624;110625;110626;110627;110628	110628			15	
EQPEMEDANSEK	1	Unmodified	1405.5667	0.56673874	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	14.648	14.218	2	3.3091E-06	11740	160511_QHF_FH_JSI11i_1	100.69	82.375			0.72461	0.75031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72461	0.75031	NaN	1	1	Median	48104000	29200000	18905000	0	0	0	0	0	0	0	0	0	48104000	29200000	18905000	13486	2432	12789	81925;81926	110629;110630	110629			2	
EQPGDLFNEDWDSELK	1	Unmodified	1920.8378	0.83775186	4916	Q9NQ92	COPRS	Coordinator of PRMT5 and differentiation stimulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	86.235	85.783	2	1.0277E-05	77997	160511_QHF_FH_JSI12i_1	121.04	106.01			1.1511	1.1328	12.035	4	1	Median	1.387	1.1166	NaN	1	1	Median	1.2211	1.3823	NaN	1	0	Median	1.085	1.0431	NaN	1	0	Median	1.0827	1.1493	NaN	1	0	Median	112220000	54464000	57756000	12633000	5370000	7262800	30930000	17838000	13092000	25770000	10211000	15559000	42887000	21044000	21843000	13487	4916	12790	81927;81928;81929;81930;81931	110631;110632;110633;110634;110635;110636;110637;110638;110639	110635			9	
EQPLDEELK	1	Unmodified	1099.5397	0.53971935	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.54	7				2	2				2	2	2	5	39.982	33.905	2	2.2368E-05	29665	160511_QHF_FH_JSI9i_1	101.64	72.17			1.3672	1.4184	23.244	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79001	0.90714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1362	1.2001	23.631	2	1	Median	534620000	229890000	304740000	0	0	0	2107600	1225300	882370	0	0	0	532520000	228660000	303860000	13488	821	12791	81932;81933;81934;81935;81936;81937;81938;81939;81940;81941;81942	110640;110641;110642;110643;110644;110645;110646;110647;110648;110649;110650	110648			11	
EQPPGYAIDTVQVNGQEK	1	Unmodified	1971.9538	0.95378467	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.953	50.538	2	0.0025379	45726	160511_QHF_FH_JSI11i_1	55.841	33.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13489	3441	12792	81943	110651	110651			1	
EQPPTEPGPQSASEVEK	1	Unmodified	1808.8428	0.84283724	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.664	31.062	2	0.0012878	27733	160511_QHF_FH_JSI11i_1	67.964	43.172			1.6094	1.5959	24.101	4	4	Median	1.5071	1.2349	NaN	1	1	Median	1.7886	2.1188	NaN	1	1	Median	1.5257	1.4168	NaN	1	1	Median	1.6978	1.7977	NaN	1	1	Median	327270000	123800000	203470000	70193000	28641000	41552000	95261000	37775000	57486000	68168000	19886000	48282000	93649000	37501000	56149000	13490	5166	12793	81944;81945;81946;81947	110652;110653;110654;110655	110652			4	
EQPQPSGK	1	Unmodified	869.4243	0.42429566	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.49	5				2	1				1	1	3	3	5.26	1.9748	2	0.00079816	2740	160511_QHF_FH_JSI12i_1	91.9	27.124			0.93119	1.0071	23.209	7	1	Median	0.93119	0.76581	NaN	1	0	Median	0.84624	1.0071	NaN	1	0	Median	1.2322	1.1889	9.8651	3	1	Plateau	0.8607	0.91742	2.2717	2	0	Median	673770000	333720000	340050000	110750000	51049000	59700000	181190000	102270000	78920000	222360000	99190000	123170000	159480000	81210000	78267000	13491	1576	12794	81948;81949;81950;81951;81952;81953;81954;81955	110656;110657;110658;110659;110660;110661;110662;110663;110664	110659			9	
EQPQQTVIADHSLSASHMETTMK	1	Unmodified	2568.1948	0.19483636	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	47.79	47.044	3;4	4.6721E-18	41392	160511_QHF_FH_JSI10i_2	140.45	128.32			0.85753	0.8901	25.759	5	3	Median	0.85753	0.74452	NaN	1	1	Median	0.65297	0.80567	18.034	2	1	Median	1.304	1.363	NaN	1	0	Median	0.89735	0.8901	NaN	1	1	Median	295060000	160800000	134260000	14923000	7015000	7908300	90574000	52914000	37661000	37398000	19071000	18326000	152170000	81804000	70365000	13492	2469	12795	81956;81957;81958;81959;81960	110665;110666;110667;110668;110669;110670;110671;110672	110669			8	
EQPWPLPVQMELGK	1	Unmodified	1650.844	0.84396364	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	93.507	93.008	2	0.009991	84506	160511_QHF_FH_JSI11i_1	48.741	16.135			0.85537	0.82969	22.777	3	0	Plateau	0.69821	0.56861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86843	0.82969	NaN	1	0	Median	0.82213	0.85616	NaN	1	0	Median	63254000	36217000	27036000	13902000	7491400	6410100	0	0	0	25501000	13595000	11907000	23851000	15132000	8719600	13493	128	12796	81961;81962;81963	110673;110674	110673			2	
EQQAAVTSSIMQAMR	0	Unmodified	1649.7865	0.78652511	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	1	2	2	63.354	62.738	2	1.8994E-05	55788	160511_QHF_FH_JSI9i_1	84.506	70.348			1.0357	1.0315	22.097	6	4	Median	1.2426	1.0124	NaN	1	1	Median	1.0238	1.1817	NaN	1	0	Median	0.83163	0.82529	34.192	2	1	Median	0.90678	0.93622	18.882	2	2	Median	173720000	92357000	81367000	21300000	11186000	10115000	29323000	14521000	14802000	52085000	32046000	20040000	71015000	34604000	36411000	13494	3100	12797	81964;81965;81966;81967;81968;81969;81970	110675;110676;110677;110678;110679;110680;110681;110682;110683;110684	110683			10	
EQQAQQEDPIER	0	Unmodified	1469.6746	0.6746497	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		16.519	16.399	2	7.4083E-06	13806	160511_QHF_FH_JSI11i_1	123.95	100.63			0.57161	0.55041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57161	0.55041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29448000	22862000	6585700	0	0	0	0	0	0	29448000	22862000	6585700	0	0	0	13495	5599	12798	81971	110685	110685			1	
EQQAQVEK	1	Unmodified	958.47197	0.47197413	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	5.7761	1.3028	2	2.3214E-06	3198	160511_QHF_FH_JSI12i_1	144.09	73.176			0.80664	0.8257	15.5	10	0	Median	1.1521	0.94282	NaN	1	0	Median	0.90692	1.09	23.535	3	0	Plateau	0.93392	1.0123	7.1747	3	0	Plateau	0.707	0.75515	4.3866	3	0	Median	2451900000	1184800000	1267100000	449200000	205700000	243510000	608410000	313520000	294900000	747580000	332300000	415280000	646740000	333300000	313450000	13496	2412	12799	81972;81973;81974;81975;81976;81977;81978;81979;81980;81981	110686;110687;110688;110689;110690;110691;110692;110693;110694;110695;110696;110697;110698	110690			13	
EQQASMEEK	1	Unmodified	1078.4601	0.46008882	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.7189	6.3832	2	7.8419E-07	4343	160511_QHF_FH_JSI12i_1	136.63	105.35			0.97179	0.97074	11.105	4	0	Median	0.97698	0.81029	NaN	1	0	Median	0.79841	0.92349	NaN	1	0	Median	1.039	1.0274	NaN	1	0	Median	0.96664	1.0204	NaN	1	0	Median	821820000	413070000	408750000	200850000	100830000	100020000	203620000	113210000	90407000	201980000	74259000	127720000	215380000	124770000	90604000	13497	1016	12800	81982;81983;81984;81985	110699;110700;110701;110702;110703;110704;110705;110706	110702			8	
EQQDLEFAK	1	Unmodified	1106.5244	0.52440364	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	35.944	29.875	2	0.026125	26493	160511_QHF_FH_JSI12i_1	66.299	21.904			0.42099	0.45876	43.746	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39356	0.38888	NaN	1	1	Median	0.59969	0.63859	46.771	2	1	Median	506310000	219610000	286700000	0	0	0	0	0	0	14866000	10934000	3932600	491440000	208680000	282770000	13498	313	12801	81986;81987;81988	110707;110708;110709	110707			2	
EQQEAIEHIDEVQNEIDR	0	Unmodified	2194.0138	0.013818748	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	57.373	56.773	2;3	4.5306E-17	51142	160511_QHF_FH_JSI10i_1	164.35	148.05			0.945	1.025	14.231	4	0	Median	1.3783	1.1234	NaN	1	0	Median	0.8257	0.97957	NaN	1	0	Median	0.84098	0.81415	NaN	1	0	Median	1.0619	1.0726	NaN	1	0	Median	881120000	482530000	398600000	132800000	60735000	72061000	316580000	196490000	120100000	301220000	159640000	141580000	130520000	65665000	64854000	13499	2164	12802	81989;81990;81991;81992;81993	110710;110711;110712;110713;110714;110715;110716;110717	110714			8	
EQQEAIEHIDEVQNEIDRLNEQASEEILK	1	Unmodified	3448.6594	0.65940015	2164	Q01105	SET	Protein SET	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.706	3	8	6							2	5	5	5	100.75	100.66	3;4	8.9654E-175	88287	160511_QHF_FH_JSI11i_2	306.46	294.62			0.97372	1.0316	7.8828	17	2	Median	1.1845	1.0263	7.6118	2	0	Median	0.82097	1.0095	9.3912	5	2	Median	1.0053	0.92611	7.5296	5	0	Median	0.99591	1.0759	5.2913	5	0	Median	6318200000	3309000000	3009300000	623060000	288430000	334630000	1424400000	783390000	641050000	2224300000	1173100000	1051200000	2046400000	1064100000	982370000	13500	2164	12803	81994;81995;81996;81997;81998;81999;82000;82001;82002;82003;82004;82005;82006;82007;82008;82009;82010	110718;110719;110720;110721;110722;110723;110724;110725;110726;110727;110728;110729;110730;110731;110732;110733;110734;110735;110736;110737;110738;110739;110740;110741;110742;110743;110744;110745;110746;110747;110748	110740			31	
EQQELLMK	1	Unmodified	1017.5165	0.51648149	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.346	29.073	2	0.0030338	25327	160511_QHF_FH_JSI9i_1	82.279	58.307			0.88538	0.7332	NaN	1	1	Median	0.88538	0.7332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45937000	23213000	22724000	45937000	23213000	22724000	0	0	0	0	0	0	0	0	0	13501	560	12804	82011	110749	110749			1	
EQQEPSSGGSVVPTVQEPK	1	Unmodified	1981.9593	0.95926398	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				41.747	40.535	2	1.9217E-08	35857	160511_QHF_FH_JSI9i_1	109.83	78.187			1.3715	1.1133	4.4893	2	2	Median	1.3715	1.1133	4.4893	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38252000	18550000	19702000	38252000	18550000	19702000	0	0	0	0	0	0	0	0	0	13502	4142	12805	82012;82013	110750;110751	110750			2	
EQQEVADRLETK	1	Unmodified	1444.7158	0.71578623	579	O75884	RBBP9	Putative hydrolase RBBP9	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		19.876	19.567	3	0.0011607	16031	160511_QHF_FH_JSI11i_2	65.563	49.213			0.38449	0.38449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38449	0.38449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45501000	28452000	17049000	0	0	0	0	0	0	45501000	28452000	17049000	0	0	0	13503	579	12806	82014	110752	110752			1	
EQQHVMEELFQSSFR	0	Unmodified	1893.8679	0.86794655	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.2		7	5						5	2	3	6	6	75.279	72.532	2;3	2.8213E-24	36382	160513_QHF_FH_JSI12Kac_6	153.22	136.92			0.92204	0.95162	14.36	17	10	Median	1.1003	0.93103	14.328	2	1	Median	0.73536	0.87935	14.921	3	3	Median	0.94222	0.90939	16.495	6	3	Median	0.92681	0.96526	14.952	6	3	Median	1885300000	942370000	942970000	312930000	123940000	188990000	260280000	136060000	124210000	756620000	389050000	367570000	555520000	293330000	262190000	13504	2094	12807	82015;82016;82017;82018;82019;82020;82021;82022;82023;82024;82025;82026;82027;82028;82029;82030;82031	110753;110754;110755;110756;110757;110758;110759;110760;110761;110762;110763;110764;110765;110766;110767;110768;110769;110770;110771;110772;110773;110774;110775;110776;110777;110778;110779	110777			27	
EQQILTLFR	0	Unmodified	1146.6397	0.63970816	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	15	0								2				1	1	79.918	69.407	2	0.022883	36803	160513_QHF_FH_JSI11Kac_5	47.198	36.784			0.91065	0.93179	2.6995	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95784	0.91417	NaN	1	0	Median	0.86579	0.94975	NaN	1	0	Median	9847100	5991200	3855900	0	0	0	0	0	0	6637100	4107600	2529500	3210000	1883600	1326400	13505	2858	12808	82032;82033	110780;110781	110780			2	
EQQIVIQSSGGLSK	1	Unmodified	1472.7835	0.78347187	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.98	10	4	4		1	3			4	5	9	6	6	42.98	39.805	2;3	4.6202E-52	35807	160511_QHF_FH_JSI10i_1	219.42	169.06			0.91485	0.97099	15.039	23	1	Median	1.0931	0.87681	13.828	5	0	Median	0.82453	0.97099	15.28	7	0	Median	0.91485	0.86066	18.66	5	0	Median	0.9505	1.0109	14.239	6	1	Median	8562600000	4370300000	4192200000	1539000000	666460000	872550000	2537000000	1411100000	1125900000	2290000000	1247200000	1042800000	2196500000	1045500000	1151000000	13506	1480	12809	82034;82035;82036;82037;82038;82039;82040;82041;82042;82043;82044;82045;82046;82047;82048;82049;82050;82051;82052;82053;82054;82055;82056;82057;82058;82059	110782;110783;110784;110785;110786;110787;110788;110789;110790;110791;110792;110793;110794;110795;110796;110797;110798;110799;110800;110801;110802;110803;110804;110805;110806;110807;110808;110809;110810;110811;110812;110813;110814;110815;110816;110817;110818;110819;110820;110821;110822;110823;110824;110825;110826;110827;110828;110829;110830	110805			48	
EQQIVIQSSGGLSKDDIENMVK	2	Unmodified	2417.2108	0.210804	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	1.4	0.49	3	2								2		1	2	71.412	70.604	3	5.8503E-10	64363	160511_QHF_FH_JSI12i_1	107.88	99.689			1.0919	0.93439	16.287	5	0	Median	1.0945	0.93398	0.060894	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93247	0.90497	NaN	1	0	Median	1.1448	1.2156	12.369	2	0	Median	322210000	157010000	165200000	58876000	26750000	32127000	0	0	0	80939000	38575000	42364000	182400000	91682000	90715000	13507	1480	12810	82060;82061;82062;82063;82064	110831;110832;110833;110834;110835	110833			5	
EQQLAEIEAR	0	Unmodified	1185.599	0.59896556	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	31.616	30.925	2	5.8711E-06	27105	160511_QHF_FH_JSI9i_1	108.47	81.166			0.60924	0.62533	21.78	3	0	Median	1.0111	0.8304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55292	0.54119	NaN	1	0	Median	0.60924	0.62533	NaN	1	0	Median	330960000	210080000	120880000	108290000	62644000	45650000	0	0	0	122100000	79040000	43064000	100560000	68392000	32168000	13508	2638;2895	12811	82065;82066;82067	110836;110837;110838;110839;110840;110841	110841			6	
EQQLGLK	1	Unmodified	814.45487	0.45486751	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.236	16.983	2	0.055159	14282	160511_QHF_FH_JSI10i_1	41.892	7.0679			0.69183	0.80485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69183	0.80485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121570000	70758000	50814000	0	0	0	121570000	70758000	50814000	0	0	0	0	0	0	13509	5261	12812	82068	110842	110842			1	
EQQLPVNEETLFQK	1	Unmodified	1701.8574	0.85736509	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.854	67.177	2	9.1847E-10	60854	160511_QHF_FH_JSI10i_1	105.03	68.607			0.9814	1.0097	12.773	3	0	Median	0.9814	0.81323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0414	1.0192	NaN	1	0	Median	0.97995	1.0097	NaN	1	0	Median	120040000	57144000	62897000	44282000	21865000	22417000	0	0	0	41062000	16736000	24326000	34697000	18543000	16154000	13510	3260	12813	82069;82070;82071;82072	110843;110844;110845;110846;110847;110848;110849	110847			7	
EQQMVMR	0	Unmodified	920.42081	0.42080696	1960	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.612	13.174	2	0.001954	10590	160511_QHF_FH_JSI11i_1	114.78	89.784			1.3504	1.2253	16.723	4	0	Median	1.3417	1.1174	NaN	1	0	Median	0.88931	1.041	NaN	1	0	Median	1.3591	1.3437	NaN	1	0	Median	1.394	1.4992	NaN	1	0	Median	1486800000	693950000	792820000	329590000	119930000	209660000	360850000	196820000	164030000	412090000	183150000	228940000	384240000	194050000	190180000	13511	1960	12814	82073;82074;82075;82076	110850;110851;110852;110853;110854	110850			5	
EQQPSSASER	0	Unmodified	1117.5	0.4999798	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				1	3	2	4	5.2258	1.0694	2	5.2951E-11	2711	160511_QHF_FH_JSI10i_1	147.2	76.281			1.1105	1.1052	13.168	9	1	Median	1.3356	1.1052	NaN	1	0	Median	0.87308	0.98418	17.268	3	0	Median	1.1361	1.1065	0.14044	2	0	Median	1.0206	1.095	6.186	3	1	Plateau	948300000	459510000	488790000	195870000	79075000	116800000	229030000	128090000	100940000	233410000	114810000	118600000	289990000	137530000	152450000	13512	1016	12815	82077;82078;82079;82080;82081;82082;82083;82084;82085;82086	110855;110856;110857;110858;110859;110860;110861;110862;110863;110864;110865;110866;110867;110868;110869;110870	110860			16	
EQQQIEK	1	Unmodified	901.45051	0.45051041	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	2	1	5.9566	4.4813	2	0.0014585	3615	160511_QHF_FH_JSI12i_1	120.46	27.195			0.98435	0.97373	40.749	6	4	Median	0.9811	0.80201	NaN	1	0	Median	0.72327	0.85129	46.442	2	2	Median	1.5664	1.5405	19.515	2	2	Median	0.69784	0.72597	NaN	1	0	Median	662990000	328800000	334190000	127830000	57277000	70556000	246070000	127030000	119040000	139350000	58693000	80660000	149730000	85799000	63934000	13513	2560	12816	82087;82088;82089;82090;82091;82092	110871;110872;110873;110874;110875;110876;110877;110878	110873			8	
EQQQQQQQQQQK	1	Unmodified	1555.7339	0.73389591	3634;2308	Q8NE71;Q12800	ABCF1;TFCP2	ATP-binding cassette sub-family F member 1;Alpha-globin transcription factor CP2	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	0.41855	0.1299	2	0.00010207	44	160511_QHF_FH_JSI10i_1	103.7	78.041			0.5161	0.54654	91.496	2	2	Median	NaN	NaN	NaN	0	0	Median	0.97729	1.0438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27255	0.28619	NaN	1	1	Median	14000000	8351400	5648200	0	0	0	8695600	4097400	4598200	0	0	0	5304000	4254000	1049900	13514	3634;2308	12817	82093;82094;82095	110879;110880;110881	110880			3	
EQQRELEAMRQR	0	Oxidation (M)	1588.774	0.77398659	709	O95613	PCNT	Pericentrin	yes	yes	0	0	1	2		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.5496	4.3229	2	0.033444	2168	160511_QHF_FH_JSI10i_1	47.261	10.676			0.92573	0.97134	11.437	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94754	1.1567	NaN	1	0	Median	1.035	0.97134	NaN	1	0	Median	0.91175	0.93266	NaN	1	0	Median	183010000	108050000	74958000	0	0	0	66068000	43288000	22780000	49594000	27392000	22202000	67348000	37372000	29976000	13515	709	12818	82096;82097;82098	110882;110883	110883			1	
EQQSNIAVFQGKK	2	Acetyl (K)	1517.7838	0.78380622	3637	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				2	2	2	53.062	42.848	2;3	2.4572E-11	23797	160513_QHF_FH_JSI11Kac_3	126.76	94.267			1.0011	1.0806	24.61	6	0	Median	NaN	NaN	NaN	0	0	Median	0.7056	0.82283	24.759	2	0	Median	1.3491	1.3045	12.186	2	0	Median	1.0011	1.0806	10.928	2	0	Median	26958000	13082000	13876000	0	0	0	10742000	6253000	4489200	7482700	2909200	4573500	8732900	3919800	4813100	13516	3637	12819	82099;82100;82101;82102;82103;82104	110884;110885;110886;110887;110888;110889;110890;110891	110886	2898		8	
EQQVADLQLK	1	Unmodified	1170.6245	0.62445203	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	39.363	38.801	2	0.000437	34349	160511_QHF_FH_JSI9i_1	85.355	70.579			0.90583	0.92893	31.392	5	2	Median	0.72327	0.58591	NaN	1	0	Median	0.54997	0.64409	NaN	1	0	Median	1.1186	1.0927	21.303	2	2	Median	0.90583	0.92893	NaN	1	0	Median	246770000	135670000	111100000	42489000	23826000	18664000	47424000	30284000	17140000	109560000	58668000	50889000	47302000	22894000	24408000	13517	2627	12820	82105;82106;82107;82108;82109	110892;110893;110894;110895;110896;110897	110897			6	
EQREKEEIEKYRMER	2	Unmodified	2052.0058	0.0058370195	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	4			By MS/MS		15	0								1				1		14.705	5.2667	6	0.060941	5870	160513_QHF_FH_JSI11Kac_5	5.0552	0.8035			66.527	63.245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66.527	63.245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1523300	7825.2	1515500	0	0	0	0	0	0	1523300	7825.2	1515500	0	0	0	13518	623	12821	82110	110898	110898			1	
EQSEGVGAR	0	Unmodified	931.43592	0.43592298	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	2	2	4	5.5721	2.6451	2	0.00012509	1908	160513_QHF_FH_JSI12Kac_3	108.98	23.914			1.0355	1.1226	11.321	8	1	Median	1.3985	1.158	NaN	1	0	Median	0.89354	1.0603	7.2859	2	0	Median	1.1281	1.1078	9.3455	2	0	Median	1.024	1.1288	18.376	3	1	Median	3450300000	1593400000	1856900000	516310000	199260000	317050000	765730000	378650000	387080000	766710000	328420000	438290000	1401600000	687100000	714470000	13519	157	12822	82111;82112;82113;82114;82115;82116;82117;82118;82119	110899;110900;110901;110902;110903;110904;110905;110906;110907;110908	110906			10	
EQSEVGSMGALLF	0	Unmodified	1366.6439	0.64386684	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		98.096	97.884	2	0.0028574	89009	160511_QHF_FH_JSI11i_1	64.439	53.287			0.88014	0.85362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88014	0.85362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18339000	8648300	9690700	0	0	0	0	0	0	18339000	8648300	9690700	0	0	0	13520	1960	12823	82120	110909	110909			1	
EQSGPSPLEETR	0	Unmodified	1328.6208	0.62082322	5117	Q9NY26	SLC39A1	Zinc transporter ZIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	22.469	21.803	2	0.00062275	18608	160511_QHF_FH_JSI9i_1	82.171	54.158			0.82329	0.80692	17.287	5	5	Median	1.2615	1.0206	11.755	2	2	Median	0.68441	0.79928	NaN	1	1	Median	0.82329	0.80692	NaN	1	1	Median	0.67885	0.70819	NaN	1	1	Median	203110000	105950000	97155000	75470000	33670000	41800000	40422000	22671000	17751000	45205000	25158000	20047000	42012000	24454000	17557000	13521	5117	12824	82121;82122;82123;82124;82125	110910;110911;110912;110913;110914	110914			5	
EQSGTIYLQHADEEREK	1	Unmodified	2031.9498	0.94976193	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	4	2	25.656	25.241	3;4	5.7492E-08	21348	160511_QHF_FH_JSI11i_3	108.56	93.403			0.99384	1.0215	17.737	9	1	Median	1.391	1.1808	1.6319	2	1	Median	0.99384	1.2428	NaN	1	0	Median	1.0116	0.94411	13.742	4	0	Median	0.80297	0.81383	6.9076	2	0	Median	651810000	319060000	332750000	103730000	47228000	56501000	107630000	60677000	46951000	251720000	120820000	130890000	188740000	90334000	98406000	13522	1467	12825	82126;82127;82128;82129;82130;82131;82132;82133;82134	110915;110916;110917;110918;110919;110920;110921;110922;110923;110924;110925;110926;110927;110928	110916			14	
EQSHEVQPGAPPPPLPK	1	Unmodified	1806.9264	0.92644771	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.503	36.904	3	0.0017296	33432	160511_QHF_FH_JSI12i_1	44.391	39.761			0.71023	0.73046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71023	0.73046	NaN	1	0	Median	51978000	28675000	23302000	0	0	0	0	0	0	0	0	0	51978000	28675000	23302000	13523	681	12826	82135	110929	110929			1	
EQSHKVYVQHLLK	2	Acetyl (K)	1649.8889	0.88893999	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	48.662	39.401	3;4	1.298E-05	21593	160513_QHF_FH_JSI11Kac_6	90.759	79.319			0.37487	0.40235	185.88	5	1	Median	NaN	NaN	NaN	0	0	Median	4.8655	5.8032	159.16	2	1	Median	0.24408	0.23165	13.006	2	0	Median	0.37487	0.40235	NaN	1	0	Median	108380000	71812000	36566000	0	0	0	18381000	3724100	14657000	83386000	63349000	20036000	6611900	4738800	1873100	13524	1100	12827	82136;82137;82138;82139;82140	110930;110931;110932;110933;110934;110935	110931	951		6	
EQSILELGSLLAK	1	Unmodified	1399.7922	0.79224564	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	3.57	4	6	2					1		2	2	5	4	99.356	98.304	2;3	2.0345E-22	87796	160511_QHF_FH_JSI9i_2	179.19	134.88			0.96623	0.94394	23.801	10	0	Median	1.645	1.3749	40.704	2	0	Median	0.7308	0.88139	5.5867	2	0	Median	0.96623	0.93861	13.425	4	0	Median	0.92964	1.0028	16.688	2	0	Median	909160000	478400000	430760000	137340000	69705000	67640000	246960000	142320000	104650000	282920000	144250000	138670000	241930000	122130000	119800000	13525	109	12828	82141;82142;82143;82144;82145;82146;82147;82148;82149;82150;82151;82152;82153	110936;110937;110938;110939;110940;110941;110942;110943;110944;110945;110946;110947;110948;110949;110950;110951;110952;110953;110954;110955;110956;110957;110958;110959;110960;110961;110962;110963;110964	110952			29	
EQSLAAESK	1	Unmodified	961.47164	0.47163978	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.9606	8.8379	2	0.048335	6553	160511_QHF_FH_JSI11i_1	44.57	10.384			0.70081	0.68893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70081	0.68893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41361000	28552000	12808000	0	0	0	0	0	0	41361000	28552000	12808000	0	0	0	13526	1779	12829	82154	110965	110965			1	
EQSLENLIK	1	Unmodified	1072.5764	0.57643921	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.65	52.985	2	5.0983E-05	47668	160511_QHF_FH_JSI10i_1	98.044	42.513			1.0287	1.0327	6.9447	4	0	Median	1.2367	1.0185	NaN	1	0	Median	1.0036	1.1784	NaN	1	0	Median	1.0522	1.0191	NaN	1	0	Median	1.0058	1.0464	NaN	1	0	Median	597760000	277520000	320240000	139930000	66751000	73183000	146410000	71573000	74834000	161740000	67850000	93887000	149680000	71347000	78332000	13527	4680	12830	82155;82156;82157;82158	110966;110967;110968;110969;110970;110971;110972;110973	110970			8	
EQSLPSVMGSVPEGVLEDIK	1	Unmodified	2113.0613	0.061286213	5143	Q9NZ32	ACTR10	Actin-related protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	100.85	100.77	2;3	5.1977E-16	91471	160511_QHF_FH_JSI10i_1	165.45	132.25			0.87965	0.89998	25.791	5	4	Median	NaN	NaN	NaN	0	0	Median	0.61275	0.71083	27.419	2	2	Median	1.1809	1.1496	NaN	1	0	Median	0.94043	0.96757	10.242	2	2	Median	247680000	137870000	109810000	0	0	0	78718000	49465000	29254000	58668000	27420000	31248000	110290000	60984000	49305000	13528	5143	12831	82159;82160;82161;82162;82163	110974;110975;110976;110977;110978	110978			5	
EQSNDDYVLEK	1	Unmodified	1338.5939	0.59393976	2210	Q03468	ERCC6	DNA excision repair protein ERCC-6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.762	27.451	2	0.0057427	24314	160511_QHF_FH_JSI10i_1	54.784	24.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13529	2210	12832	82164	110979	110979			1	
EQSNDIAR	0	Unmodified	931.43592	0.43592298	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.2	5.88	2					3				1		2	2	8.2989	1.7523	2	0.006084	3588	160511_QHF_FH_JSI12i_1	72.23	25.84			1.1086	1.1797	19.293	5	2	Median	1.035	0.79596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2874	1.2655	1.029	2	1	Median	1.0585	1.1366	5.2638	2	1	Median	316600000	163670000	152920000	1395800	660780	734970	0	0	0	201020000	109130000	91892000	114180000	53886000	60296000	13530	1572	12833	82165;82166;82167;82168;82169	110980;110981;110982;110983;110984	110981			5	
EQSNPALAIK	1	Unmodified	1069.5768	0.57677356	1714	P50613	CDK7	Cyclin-dependent kinase 7	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.537	28.619	2	0.0096446	25744	160511_QHF_FH_JSI12i_1	61.48	45.186			0.93761	0.84747	11.37	2	0	Median	0.97985	0.782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89718	0.91842	NaN	1	0	Median	58327000	34619000	23709000	25215000	16882000	8333000	0	0	0	0	0	0	33113000	17737000	15376000	13531	1714	12834	82170;82171	110985;110986	110985			2	
EQSNPYMVLDIDK	1	Unmodified	1550.7287	0.72865911	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.734	69.476	2	4.3545E-05	62950	160511_QHF_FH_JSI10i_1	78.964	50.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13532	475	12835	82172	110987	110987			1	
EQSPHVVQSVISLIMGMK	1	Unmodified	1982.0329	0.032903393	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			103.34	103.2	3	0.0064953	85784	160511_QHF_FH_JSI10i_3	44.567	34.468			0.96379	1.1313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96379	1.1313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3686600	2180300	1506400	0	0	0	3686600	2180300	1506400	0	0	0	0	0	0	13533	625	12836	82173	110988	110988			1	
EQSQLTATQTR	0	Unmodified	1261.6262	0.62624295	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	13.641	10.295	2	4.2438E-18	9181	160511_QHF_FH_JSI12i_1	161.67	93.718			0.90914	0.90051	10.173	7	0	Median	1.1083	0.90051	NaN	1	0	Median	0.73834	0.87019	22.264	2	0	Median	0.92071	0.90953	1.7829	2	0	Median	0.8779	0.93967	7.8972	2	0	Median	1192500000	619660000	572850000	225980000	106930000	119050000	359340000	190010000	169330000	236260000	124960000	111300000	370930000	197760000	173160000	13534	3101	12837	82174;82175;82176;82177;82178;82179;82180	110989;110990;110991;110992;110993;110994;110995;110996;110997;110998;110999;111000	110991			12	
EQSSEAAETGVSENEENPVR	0	Unmodified	2160.9407	0.94071338	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	29.489	28.92	2	5.6821E-25	25221	160511_QHF_FH_JSI9i_1	178.12	152			1.0116	0.89942	28.588	4	3	Median	1.0693	0.88941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86206	0.82331	14.084	2	2	Median	1.4466	1.4544	NaN	1	1	Median	99237000	49480000	49757000	22530000	11961000	10569000	0	0	0	48655000	26724000	21931000	28052000	10795000	17257000	13535	2789	12838	82181;82182;82183;82184	111001;111002;111003;111004;111005;111006	111006			6	
EQSSVLITLLLPFLHR	0	Unmodified	1865.0775	0.077469045	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.663	90.236	3	5.3498E-24	49118	160513_QHF_FH_JSI12Kac_6	150.39	139.92			0.90559	0.90793	4.7501	4	1	Median	1.0521	0.8927	NaN	1	0	Median	0.82287	0.98424	NaN	1	0	Median	0.97532	0.92341	NaN	1	1	Median	0.84084	0.88744	NaN	1	0	Median	1482500000	772960000	709540000	418940000	205640000	213300000	554580000	307670000	246910000	324900000	154580000	170310000	184090000	105070000	79016000	13536	557	12839	82185;82186;82187;82188	111007;111008;111009;111010;111011;111012	111010			6	
EQTADGVAVIPVLQR	0	Unmodified	1594.8679	0.8678702	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	5.46	9	2				2	2			2	6	2	5	72.916	69.832	2;3	1.9809E-65	63737	160511_QHF_FH_JSI10i_1	262.11	242.87			0.99516	1.0513	10.981	14	2	Median	1.2844	1.0622	5.7634	2	0	Median	0.8875	1.0486	16.057	6	2	Median	1.0784	1.0539	1.579	2	0	Median	0.99516	1.0513	7.803	4	0	Median	3422500000	1698800000	1723700000	686440000	301440000	385000000	1047500000	560060000	487430000	865140000	440290000	424850000	823450000	397010000	426440000	13537	5370	12840	82189;82190;82191;82192;82193;82194;82195;82196;82197;82198;82199;82200;82201;82202;82203	111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025;111026;111027;111028;111029;111030;111031;111032;111033;111034;111035;111036;111037;111038	111024			25	
EQTEGEYSSLEHESAR	0	Unmodified	1850.7919	0.7918643	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.25	0.433	6	2								3	1	2	2	24.46	23.867	2;3	4.0416E-11	20654	160511_QHF_FH_JSI9i_1	106.17	92.747			1.1359	1.053	8.4123	6	0	Median	1.2377	1.0367	11.006	2	0	Median	0.87373	1.0314	NaN	1	0	Median	1.0816	1.053	0.84604	2	0	Median	1.217	1.2297	NaN	1	0	Median	568020000	288230000	279790000	91187000	39977000	51210000	134010000	80111000	53902000	213160000	113910000	99252000	129660000	54237000	75421000	13538	386	12841	82204;82205;82206;82207;82208;82209;82210;82211	111039;111040;111041;111042;111043;111044;111045;111046;111047;111048	111045			10	
EQTEQILR	0	Unmodified	1015.5298	0.52982336	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	20.587	20.294	2	0.00045884	17826	160511_QHF_FH_JSI12i_1	107.57	44.009			0.9885	1.0018	5.7679	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84286	1.0018	NaN	1	0	Median	0.96523	0.95495	NaN	1	0	Median	1.0105	1.0711	NaN	1	0	Median	1276500000	677270000	599200000	0	0	0	416380000	225840000	190540000	429980000	213160000	216820000	430120000	238270000	191850000	13539	1205	12842	82212;82213;82214	111049;111050;111051;111052	111051			3	
EQTFSGGTSQDTK	1	Unmodified	1384.6107	0.61065246	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.47	4		1		4	3				2	3	4	3	14.187	9.6941	2	1.7399E-30	9021	160511_QHF_FH_JSI12i_1	185.59	164.13			0.95148	1.0576	10.898	10	1	Median	1.2991	1.0729	NaN	1	0	Median	0.8519	0.98671	6.7039	3	0	Median	1.1056	1.0832	6.2632	3	1	Median	0.84029	0.87229	13.953	3	0	Median	1854800000	976750000	878050000	481010000	237380000	243630000	450490000	253760000	196740000	399760000	206520000	193240000	523530000	279080000	244450000	13540	5542	12843	82215;82216;82217;82218;82219;82220;82221;82222;82223;82224;82225;82226	111053;111054;111055;111056;111057;111058;111059;111060;111061;111062;111063;111064;111065;111066;111067;111068;111069;111070;111071	111057			19	
EQTGLEAYALGLDTK	1	Unmodified	1607.8043	0.80426689	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	72.426	72.002	2;3	8.1972E-17	65230	160511_QHF_FH_JSI10i_1	125.53	104.13			0.73495	0.72238	20.797	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91551	0.88781	29.163	2	2	Median	0.79274	0.84726	NaN	1	1	Median	75151000	39802000	35349000	0	0	0	0	0	0	52415000	28372000	24043000	22736000	11430000	11306000	13541	1621	12844	82227;82228;82229;82230	111072;111073;111074;111075	111075			4	
EQTGNLK	1	Unmodified	788.40283	0.40283194	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	5.3497	5.0035	2	0.020299	3145	160511_QHF_FH_JSI10i_1	60.788	9.822			0.97788	0.90366	18.788	4	1	Median	0.9428	0.78707	NaN	1	0	Median	0.66124	0.77433	NaN	1	1	Median	1.0143	1.0375	NaN	1	0	Median	1.066	1.1164	NaN	1	0	Median	668070000	338730000	329340000	95805000	46390000	49415000	140760000	81432000	59333000	284730000	133800000	150920000	146770000	77103000	69668000	13542	4603	12845	82231;82232;82233;82234	111076;111077	111077			2	
EQTLHTPVMMQTPQLTSTIMREPK	1	Unmodified	2796.3972	0.39724133	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			76.053	74.636	4	2.0323E-06	62548	160511_QHF_FH_JSI10i_3	64.954	58.378			0.76632	0.88928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76632	0.88928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65227000	41293000	23934000	0	0	0	65227000	41293000	23934000	0	0	0	0	0	0	13543	3521	12846	82235	111078;111079	111078			2	
EQTLSPTITSGLHNIAR	0	Unmodified	1836.9694	0.96937516	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		67.138	57.533	3	0.015356	31190	160513_QHF_FH_JSI11Kac_6	42.951	31.26			0.49126	0.49503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49126	0.49503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7256000	5412800	1843100	0	0	0	0	0	0	7256000	5412800	1843100	0	0	0	13544	636	12847	82236	111080	111080			1	
EQTPWDSIK	1	Unmodified	1102.5295	0.52948901	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.638	46.979	2	0.00075663	42619	160511_QHF_FH_JSI12i_1	85.731	42.484			0.81688	0.85924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81688	0.85924	NaN	1	1	Median	157600000	86474000	71121000	0	0	0	0	0	0	0	0	0	157600000	86474000	71121000	13545	3248	12848	82237	111081	111081			1	
EQTQDLIVK	1	Unmodified	1072.5764	0.57643921	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.791	30.223	2	0.0062978	27057	160511_QHF_FH_JSI12i_1	54.722	26.549			0.88038	0.91357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88038	0.91357	NaN	1	0	Median	126120000	71459000	54665000	0	0	0	0	0	0	0	0	0	126120000	71459000	54665000	13546	5541	12849	82238	111082	111082			1	
EQTTDQPLAK	1	Unmodified	1129.5615	0.56151742	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		13.308	12.788	2	0.0013043	10106	160511_QHF_FH_JSI9i_1	77.662	53.69			1.4396	1.2691	11.279	2	2	Median	1.4415	1.1718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4376	1.3745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88564000	39089000	49475000	48481000	23126000	25354000	0	0	0	40084000	15963000	24121000	0	0	0	13547	5270	12850	82239;82240	111083;111084	111084			2	
EQTVYYAK	1	Unmodified	1000.4866	0.48656157	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	17.737	16.959	2	0.0011491	14494	160511_QHF_FH_JSI12i_1	93.374	67.265			0.66899	0.61447	9.0602	2	1	Median	0.69754	0.57634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64162	0.65512	NaN	1	0	Median	344500000	194950000	149550000	158340000	89157000	69186000	0	0	0	0	0	0	186160000	105790000	80365000	13548	527	12851	82241;82242	111085;111086;111087	111085			3	
EQTVYYAKAFSK	2	Acetyl (K)	1475.7296	0.72964538	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		66.049	54.992	2	0.041187	30736	160513_QHF_FH_JSI11Kac_4	50.284	32.848			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	710030	710030	0	0	0	0	0	0	0	710030	710030	0	0	0	0	13549	527	12852	82243	111088	111088	272		1	
EQVAEETSGDSK	1	Unmodified	1278.5576	0.55755426	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	8.6944	6.958	2	5.2229E-11	5757	160511_QHF_FH_JSI11i_1	150.06	98.71			1.3938	1.4932	40.986	5	1	Median	1.2265	1.015	NaN	1	0	Median	1.3938	1.6761	NaN	1	0	Median	2.0184	1.96	38.475	2	1	Median	0.90515	0.93288	NaN	1	0	Median	389280000	176560000	212710000	99100000	48468000	50632000	81782000	33946000	47836000	109220000	44551000	64672000	99170000	49597000	49573000	13550	1430	12853	82244;82245;82246;82247;82248	111089;111090;111091;111092;111093;111094;111095;111096;111097	111090			9	
EQVANSAFVER	0	Unmodified	1248.6099	0.6098646	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.94	6.11	6	5	5		3	4	3	3	3	7	9	7	9	33.042	27.563	2	4.2995E-48	24129	160511_QHF_FH_JSI11i_2	221.55	178.46			0.99037	0.99578	12.18	30	9	Median	1.1543	0.98175	9.1021	6	3	Median	0.83242	0.97987	16.405	9	4	Median	1.0653	1.0337	6.9721	7	0	Median	0.92223	0.99354	12.756	8	2	Median	38790000000	18979000000	19811000000	6001700000	2754700000	3247000000	12117000000	6493700000	5623700000	6929700000	2928700000	4001000000	13741000000	6801700000	6939000000	13551	898	12854	82249;82250;82251;82252;82253;82254;82255;82256;82257;82258;82259;82260;82261;82262;82263;82264;82265;82266;82267;82268;82269;82270;82271;82272;82273;82274;82275;82276;82277;82278;82279;82280	111098;111099;111100;111101;111102;111103;111104;111105;111106;111107;111108;111109;111110;111111;111112;111113;111114;111115;111116;111117;111118;111119;111120;111121;111122;111123;111124;111125;111126;111127;111128;111129;111130;111131;111132;111133;111134;111135;111136;111137;111138;111139;111140;111141;111142;111143;111144;111145;111146;111147;111148;111149;111150;111151	111133			54	
EQVEEDNEVSSGLK	1	Unmodified	1561.7108	0.71076044	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.487	28.892	2	0.00030028	25872	160511_QHF_FH_JSI12i_1	102.73	89.139			0.67005	0.67892	22.061	4	4	Median	0.83123	0.70555	NaN	1	1	Median	0.55878	0.65328	NaN	1	1	Median	0.80349	0.75297	NaN	1	1	Median	0.44721	0.45913	NaN	1	1	Median	187320000	112710000	74610000	37732000	22122000	15610000	51846000	28017000	23829000	50636000	33190000	17446000	47102000	29377000	17725000	13552	2574	12855	82281;82282;82283;82284	111152;111153;111154;111155	111153			4	
EQVEPTPEDEDDDIELR	0	Unmodified	2027.8807	0.88073889	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.711	51.038	2	2.834E-52	46236	160511_QHF_FH_JSI11i_1	220.21	187.6			0.91846	0.95828	10.388	4	0	Median	1.3539	1.1086	NaN	1	0	Median	0.79176	0.93807	NaN	1	0	Median	1.0087	0.97893	NaN	1	0	Median	0.83628	0.86415	NaN	1	0	Median	210430000	112180000	98256000	24209000	10623000	13586000	68074000	40013000	28062000	59552000	29392000	30161000	58596000	32149000	26447000	13553	3307	12856	82285;82286;82287;82288	111156;111157;111158;111159;111160;111161;111162;111163;111164	111158			9	
EQVHQTTR	0	Unmodified	997.49411	0.49410656	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0				By MS/MS	2	0		2											2	0.074132	-0.4809	2;3	0.00062435	50	160511_QHF_FH_JSI12i_2	71.614	42.656		+	0.51669	0.56903	19.834	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51669	0.56903	19.834	2	0	Median	32719000	20582000	12137000	0	0	0	0	0	0	0	0	0	32719000	20582000	12137000	13554	65	12857	82289;82290	111165;111166	111166			2	
EQVIAALR	0	Unmodified	898.52362	0.52361577	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.97	1	4	2				1			2	3	1	2	37.967	35.784	2	0.0045409	31064	160511_QHF_FH_JSI9i_2	68.383	25.259			0.9241	0.98675	93.743	8	2	Median	3.6446	2.9803	167.68	2	0	Median	0.68149	0.83973	11.492	3	2	Plateau	0.96151	0.98699	NaN	1	0	Median	1.8758	2.0292	118.51	2	0	Median	1603200000	686940000	916300000	269960000	42187000	227780000	315660000	161680000	153980000	555150000	268560000	286580000	462470000	214510000	247960000	13555	1831	12858	82291;82292;82293;82294;82295;82296;82297;82298	111167;111168;111169;111170;111171	111171			5	
EQVLDVLTK	1	Unmodified	1043.5863	0.58627561	4362	Q9BQG2	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	59.319	58.198	2	0.00064835	52895	160511_QHF_FH_JSI12i_1	81.338	48.497			0.9964	0.82034	NaN	1	1	Median	0.9964	0.82034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24055000	13601000	10454000	24055000	13601000	10454000	0	0	0	0	0	0	0	0	0	13556	4362	12859	82299;82300;82301;82302	111172;111173;111174;111175	111172			4	
EQVLEPMLNGTDK	1	Unmodified	1472.7181	0.71809442	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	54.164	53.501	2	1.9517E-07	48556	160511_QHF_FH_JSI11i_1	99.215	49.715			0.94144	0.9081	16.667	3	1	Median	0.94144	0.7685	NaN	1	0	Median	0.91926	1.0725	NaN	1	0	Median	0.95311	0.9081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127980000	70771000	57207000	56112000	35850000	20262000	41613000	20679000	20934000	30253000	14242000	16011000	0	0	0	13557	2197	12860	82303;82304;82305;82306;82307	111176;111177;111178;111179;111180	111177			5	
EQVLEPMLNGTEK	1	Unmodified	1486.7337	0.73374448	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	54.151	53.488	2	4.2179E-06	47634	160511_QHF_FH_JSI9i_1	124.12	82.123			0.86783	0.87652	27.318	8	8	Median	0.82139	0.67844	16.897	2	2	Median	0.74802	0.87652	8.0099	2	2	Median	1.1981	1.1765	14.495	2	2	Median	0.92761	0.95106	39.472	2	2	Median	988150000	520120000	468030000	315140000	165160000	149980000	245500000	146000000	99507000	241510000	112450000	129050000	186000000	96516000	89487000	13558	999	12861	82308;82309;82310;82311;82312;82313;82314;82315	111181;111182;111183;111184;111185;111186;111187;111188	111188			8	
EQVNDLFSR	0	Unmodified	1106.5356	0.53563702	2087	P78347	GTF2I	General transcription factor II-I	no	no	0	0	0	0	By MS/MS			By MS/MS	7.5	6.5	1						1			1			1	49.576	43.686	2	0.0047102	39215	160511_QHF_FH_JSI9i_1	66.19	40.631			1.423	1.3458	17.926	2	1	Median	1.8495	1.5277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0948	1.1856	NaN	1	0	Median	159950000	42557000	117390000	158130000	41862000	116260000	0	0	0	0	0	0	1821200	694880	1126300	13559	2087	12862	82316;82317	111189;111190;111191	111189			3	
EQVNDLFSRK	1	Unmodified	1234.6306	0.63060004	2087	P78347	GTF2I	General transcription factor II-I	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	36.245	35.683	2;3	3.9445E-05	31293	160511_QHF_FH_JSI10i_2	83.045	65.181			1.7188	2.086	50.23	7	1	Median	1.2173	1.0399	NaN	1	0	Median	1.7188	2.086	NaN	1	0	Median	2.9088	2.7605	33.913	3	1	Median	1.5813	1.6712	86.75	2	0	Median	754560000	258820000	495740000	85471000	44563000	40908000	140990000	54746000	86243000	337200000	96630000	240570000	190900000	62881000	128020000	13560	2087	12863	82318;82319;82320;82321;82322;82323;82324	111192;111193;111194;111195;111196;111197;111198	111196			5	
EQVPGFTPR	0	Unmodified	1029.5243	0.52434406	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	38.883	34.204	2	0.002468	20388	160513_QHF_FH_JSI11Kac_4	78.149	46.084			0.94518	1.0282	11.902	7	2	Median	1.2628	1.0282	NaN	1	0	Median	0.81828	0.96887	2.3758	2	1	Median	1.0015	0.98955	21.277	2	1	Median	1.0384	1.1201	12.082	2	0	Median	1717100000	880780000	836330000	282350000	118500000	163860000	581530000	327130000	254400000	483640000	247650000	236000000	369580000	187500000	182080000	13561	1004	12864	82325;82326;82327;82328;82329;82330;82331	111199;111200;111201;111202;111203;111204;111205;111206	111203			8	
EQVPSGAELER	0	Unmodified	1213.5939	0.59388018	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	28.978	28.298	2	3.8382E-05	25104	160511_QHF_FH_JSI11i_1	102.06	68.14			0.80919	0.74061	15.366	3	3	Median	0.80919	0.65873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77282	0.74061	NaN	1	1	Median	0.84645	0.89333	NaN	1	1	Median	550790000	307750000	243040000	183120000	90359000	92761000	0	0	0	151190000	87627000	63559000	216490000	129770000	86722000	13562	3799	12865	82332;82333;82334;82335;82336	111207;111208;111209;111210;111211	111208			5	
EQVPSLGSNVACGLAYTDYHK	1	Unmodified	2308.0794	0.079395893	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	68.593	67.65	3	1.2717E-14	59208	160511_QHF_FH_JSI11i_2	127.1	119.3			1.1013	1.1278	30.479	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92029	0.90912	NaN	1	0	Median	1.3178	1.399	NaN	1	0	Median	73580000	38725000	34855000	0	0	0	0	0	0	50264000	27858000	22406000	23316000	10867000	12450000	13563	10	12866	82337;82338	111212;111213	111213			1	
EQVSELNK	1	Unmodified	945.47673	0.47672516	4195	Q96PC5;Q8IX95	MIA2;CTAGE3P	Melanoma inhibitory activity protein 2;Putative cTAGE family member 3	yes	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		13.98	13.431	2	0.015978	10864	160511_QHF_FH_JSI11i_1	49.96	4.4712			0.77285	0.67541	25.309	2	0	Median	0.68723	0.56474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86913	0.80778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138810000	69023000	69783000	70775000	35831000	34944000	0	0	0	68030000	33192000	34839000	0	0	0	13564	4195	12867	82339;82340	111214;111215	111214			2	
EQVSPLETTLEK	1	Unmodified	1372.7086	0.70857559	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.67	5.25	1		1			1				1	1	1		58.911	57.377	2;3	7.4038E-10	45625	160511_QHF_FH_JSI10i_1	122.7	97.845			9.7712	7.8788	NaN	1	0	Median	9.7712	7.8788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124390000	17938000	106460000	124390000	17938000	106460000	0	0	0	0	0	0	0	0	0	13565	3896	12868	82341;82342;82343	111216;111217;111218	111217			3	
EQVTNVGGAVVTGVTAVAQK	1	Unmodified	1927.0375	0.037454724	1472	P37840	SNCA	Alpha-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	72.379	71.863	2;3	1.0352E-42	65514	160511_QHF_FH_JSI12i_1	203.99	174.18			0.99382	0.98603	16.212	8	0	Median	1.3863	1.1432	9.239	2	0	Median	0.75695	0.89536	5.2106	2	0	Median	0.8661	0.84122	22.026	2	0	Median	1.016	1.0447	7.7328	2	0	Median	879090000	444190000	434900000	239870000	102530000	137340000	247620000	144310000	103310000	184310000	94782000	89526000	207290000	102560000	104730000	13566	1472	12869	82344;82345;82346;82347;82348;82349;82350;82351	111219;111220;111221;111222;111223;111224;111225;111226;111227;111228;111229;111230;111231	111223			13	
EQVYDAMGEK	1	Unmodified	1168.507	0.50703901	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.149	26.881	2	0.0047185	23348	160511_QHF_FH_JSI9i_1	57.149	27.987			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13567	1649	12870	82352	111232	111232			1	
EQWANLEQLSAIR	0	Unmodified	1556.7947	0.79470526	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.155	77.953	2	0.0086635	67444	160511_QHF_FH_JSI12i_2	58.676	42.423			1.3966	1.5313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3966	1.5313	NaN	1	1	Median	22515000	6902000	15613000	0	0	0	0	0	0	0	0	0	22515000	6902000	15613000	13568	2162	12871	82353	111233	111233			1	
EQWDTIEELIRK	1	Unmodified	1558.7991	0.79912193	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	80.524	79.983	3	1.4622E-11	69238	160511_QHF_FH_JSI12i_3	129.71	104.99			0.87483	0.99604	39.258	5	1	Median	NaN	NaN	NaN	0	0	Median	0.81463	0.99604	NaN	1	0	Median	1.1593	1.1388	35.62	2	1	Median	0.70039	0.74708	55.421	2	0	Median	393640000	218200000	175440000	0	0	0	58379000	29558000	28821000	160350000	92906000	67439000	174920000	95735000	79180000	13569	2754	12872	82354;82355;82356;82357;82358;82359	111234;111235;111236;111237;111238;111239;111240;111241;111242	111242			9	
EQWKEVHK	2	Acetyl (K)	1124.5615	0.56145784	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	14.8	0.373							1	5			2	3	1	29.169	19.985	3	0.0012014	12394	160513_QHF_FH_JSI11Kac_5	81.338	65.676			0.55424	0.5831	93.731	4	0	Median	NaN	NaN	NaN	0	0	Median	1.8247	2.1481	NaN	1	0	Median	0.45944	0.45313	85.621	2	0	Median	0.36155	0.40957	NaN	1	0	Median	46450000	26305000	20145000	0	0	0	4223600	1437500	2786100	35805000	20277000	15528000	6421000	4590100	1830900	13570	761	12873	82360;82361;82362;82363;82364;82365	111243;111244;111245;111246;111247	111245	365;366		5	
EQWLNNMQIPEK	1	Unmodified	1528.7344	0.73441319	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.865	64.934	2	0.00023431	55730	160511_QHF_FH_JSI12i_2	78.342	67.818			1.0002	1.0283	1.5776	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0685	1.0399	NaN	1	1	Median	0.93616	1.0169	NaN	1	0	Median	25638000	12233000	13405000	0	0	0	0	0	0	9621100	5218300	4402800	16017000	7014500	9002300	13571	2162	12874	82366;82367	111248;111249	111248			2	
EQWWLSLR	0	Unmodified	1116.5716	0.5716286	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	80.508	79.837	2	0.0041436	71008	160511_QHF_FH_JSI10i_2	69.598	51.613			0.94677	0.95162	19.442	6	3	Median	1.0347	0.88317	NaN	1	0	Median	0.9594	1.1847	NaN	1	0	Median	0.90841	0.91277	2.3247	2	2	Median	1.1042	1.1863	27.608	2	1	Median	198930000	95801000	103130000	21409000	10401000	11007000	40093000	20286000	19807000	58218000	30429000	27789000	79213000	34684000	44528000	13572	1129	12875	82368;82369;82370;82371;82372;82373	111250;111251;111252;111253;111254;111255	111254			6	
EQYAQEHGLNFQR	0	Unmodified	1618.7488	0.7488177	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	3	3	32.521	31.955	2;3	3.3767E-09	27016	160511_QHF_FH_JSI12i_3	102.4	86.023			0.96377	1.0255	12.869	6	4	Median	1.5482	1.3468	NaN	1	1	Median	0.90175	1.1104	5.7206	2	2	Median	1.014	0.97477	0.71195	2	1	Median	0.9553	0.98622	NaN	1	0	Median	446050000	215100000	230950000	45536000	17829000	27708000	86530000	43027000	43503000	168060000	74494000	93563000	145930000	79747000	66180000	13573	2635	12876	82374;82375;82376;82377;82378;82379;82380;82381;82382;82383	111256;111257;111258;111259;111260;111261;111262;111263;111264;111265;111266	111265			11	
EQYEALQEETR	0	Unmodified	1394.6314	0.6313879	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.825	26.395	2	0.0011921	22917	160511_QHF_FH_JSI9i_1	70.1	54.471			0.72536	0.80645	4.8264	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70972	0.83444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74134	0.77939	NaN	1	0	Median	58430000	31089000	27341000	0	0	0	28666000	13226000	15440000	0	0	0	29764000	17863000	11901000	13574	5458	12877	82384;82385;82386;82387	111267;111268;111269	111269			3	
EQYEQILAFVQGTVAEGAPIIPISAQLK	1	Unmodified	3012.6172	0.61718839	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.66	1	7							4	3	4	2	3	101.47	98.607	3;4	1.4783E-14	90447	160511_QHF_FH_JSI11i_2	90.899	88.586			1.0032	0.97948	24.654	12	0	Median	1.1659	0.99972	11.455	3	0	Median	0.63879	0.7633	37.367	4	0	Median	1.0067	1.0284	4.8871	2	0	Median	0.74978	0.80171	18.927	3	0	Plateau	1091100000	575180000	515920000	179980000	91520000	88460000	331280000	201030000	130250000	374030000	178920000	195110000	205810000	103710000	102100000	13575	1508	12878	82388;82389;82390;82391;82392;82393;82394;82395;82396;82397;82398;82399	111270;111271;111272;111273;111274;111275;111276;111277	111272			8	
EQYEQLSQSEK	1	Unmodified	1367.6205	0.62048887	3739	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			19.335	19.078	2	0.016728	16396	160511_QHF_FH_JSI10i_1	44.543	2.2068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13576	3739	12879	82400	111278	111278			1	
EQYGLGPYEAVTPLTK	1	Unmodified	1764.8934	0.89341625	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				72.928	71.997	2	4.2632E-05	64049	160511_QHF_FH_JSI9i_1	113.72	100.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18799000	8908300	9890400	18799000	8908300	9890400	0	0	0	0	0	0	0	0	0	13577	2320	12880	82401	111279	111279			1	
EQYLYTK	1	Unmodified	943.4651	0.46509784	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.699	22.166	2	0.020458	19154	160511_QHF_FH_JSI11i_1	60.682	34.573			0.67024	0.7466	18.406	4	1	Median	1.0706	0.86854	NaN	1	0	Median	0.65636	0.80098	NaN	1	0	Median	0.58728	0.57056	NaN	1	1	Median	0.68441	0.69591	NaN	1	0	Median	346810000	191130000	155680000	82457000	40491000	41966000	65870000	33792000	32078000	82329000	47163000	35166000	116150000	69687000	46466000	13578	5640	12881	82402;82403;82404;82405	111280;111281;111282	111280			3	
EQYPNKFIQR	1	Acetyl (K)	1363.6884	0.68844927	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		54.762	43.906	2	0.030835	25539	160513_QHF_FH_JSI11Kac_4	47.198	38.665			0.86701	0.87059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86701	0.87059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4964600	2542500	2422200	0	0	0	0	0	0	4964600	2542500	2422200	0	0	0	13579	1690	12882	82406	111283	111283			1	
EQYQDVPMPEEK	1	Unmodified	1491.6552	0.65515981	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.959	39.636	2	0.0003441	35630	160511_QHF_FH_JSI11i_1	89.805	65.013			0.42416	0.41455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42416	0.41455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55383000	28845000	26538000	0	0	0	0	0	0	55383000	28845000	26538000	0	0	0	13580	4330	12883	82407	111284	111284			1	
EQYQQLDITSTK	1	Unmodified	1452.7096	0.70963822	2822	Q3V6T2	CCDC88A	Girdin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.767	39.465	2	0.0063462	35593	160511_QHF_FH_JSI11i_1	61.48	46.272			0.66016	0.63981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66016	0.63981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18530000	8822100	9707500	0	0	0	0	0	0	18530000	8822100	9707500	0	0	0	13581	2822	12884	82408	111285	111285			1	
EQYQVVIQAK	1	Unmodified	1204.6452	0.64518747	5745	Q9Y6N8;Q9ULB4;P55285	CDH10;CDH9;CDH6	Cadherin-10;Cadherin-9;Cadherin-6	yes	no	0	0	0	0		By MS/MS		By MS/MS	5	5.66	2					1					1		2	40.772	37.469	2	0.00086042	33251	160511_QHF_FH_JSI10i_1	69.338	57.848			0.51528	0.56812	43.265	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.47673	0.56087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84491	0.8882	48.32	2	1	Median	145580000	101880000	43698000	0	0	0	90113000	65842000	24271000	0	0	0	55463000	36036000	19426000	13582	5745	12885	82409;82410;82411	111286;111287;111288;111289	111288			4	
EQYSTSLAQSEAELK	1	Unmodified	1682.7999	0.79990979	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		48.704	48.019	2	1.038E-09	43202	160511_QHF_FH_JSI10i_1	145.6	117.59			1.1004	0.92872	25.543	3	2	Median	1.1004	0.92872	NaN	1	1	Median	0.60751	0.68385	NaN	1	0	Median	1.1814	1.1357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100790000	56632000	44158000	30406000	16429000	13977000	34129000	20180000	13949000	36255000	20023000	16232000	0	0	0	13583	5458	12886	82412;82413;82414	111290;111291;111292	111291			3	
ERAGVSTVQK	1	Unmodified	1073.5829	0.58292157	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			7.4286	6.8918	3	0.00021239	4840	160511_QHF_FH_JSI10i_3	60.641	12.55			1.1081	1.0658	16.252	2	0	Median	1.1521	0.95006	NaN	1	0	Median	1.0659	1.1956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71538000	36486000	35052000	32143000	15600000	16543000	39396000	20886000	18509000	0	0	0	0	0	0	13584	2943	12887	82415;82416	111293	111293			1	
ERAMSTTSISSPQPGK	1	Unmodified	1675.8199	0.81993373	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.511	22.255	3	0.052321	18296	160511_QHF_FH_JSI10i_3	31.614	19.469			2.0436	2.3929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0436	2.3929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9680700	2541700	7139000	0	0	0	9680700	2541700	7139000	0	0	0	0	0	0	13585	5346	12888	82417	111294	111294			1	
ERAQGVVLK	1	Unmodified	998.58728	0.58727866	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			13.21	12.382	3	0.00028595	9844	160511_QHF_FH_JSI10i_3	75.509	51.287			1.4139	1.3888	20.694	2	0	Median	2.0236	1.6077	NaN	1	0	Median	0.98788	1.1998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138310000	54491000	83815000	51023000	14995000	36028000	87283000	39496000	47787000	0	0	0	0	0	0	13586	4338	12889	82418;82419	111295;111296	111295			2	
ERCCNFAEEK	1	Unmodified	1341.5442	0.54416957	5777				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	36.133	35.4	3	0.042396	31065	160511_QHF_FH_JSI9i_1	27.481	2.6283	+		1.0587	1.1433	23.405	5	0	Median	1.8028	1.4646	0	2	0	Median	0.97854	1.1433	NaN	1	0	Median	1.0587	1.0368	NaN	1	0	Median	0.83302	0.84864	NaN	1	0	Median	495810000	217760000	278060000	163580000	54478000	109110000	106720000	54812000	51906000	140500000	65485000	75013000	85013000	42980000	42033000	13587	5777	12890	82420;82421;82422;82423;82424	111297	111297			1	
ERDDILR	0	Unmodified	915.47739	0.47739386	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	12.839	12.276	2	0.029556	10107	160511_QHF_FH_JSI10i_2	98.997	38.237			0.87417	0.96314	6.3427	4	0	Median	1.1934	1.0262	NaN	1	0	Median	0.80119	0.96752	NaN	1	0	Median	0.95065	0.95879	NaN	1	0	Median	0.80384	0.8798	NaN	1	0	Median	471030000	251900000	219130000	110090000	47099000	62988000	144380000	77526000	66852000	155750000	91146000	64602000	60818000	36128000	24691000	13588	1139	12891	82425;82426;82427;82428	111298	111298			1	
ERDFTSLENTVEER	0	Unmodified	1723.8013	0.80130678	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	3.7	1	5	4					1		1	1	5	4	50.184	48.629	2;3	5.0745E-05	41615	160511_QHF_FH_JSI12i_3	103.14	80.816			1.1258	1.0483	26.751	11	0	Median	1.3997	1.2198	NaN	1	0	Median	0.83479	1.0167	NaN	1	0	Median	1.1258	1.0483	12.201	5	0	Median	1.0311	1.0825	45.817	4	0	Median	1033800000	517500000	516300000	124030000	57713000	66321000	126870000	69437000	57435000	611840000	309680000	302160000	171050000	80665000	90382000	13589	2252	12892	82429;82430;82431;82432;82433;82434;82435;82436;82437;82438;82439	111299;111300;111301;111302;111303;111304;111305;111306	111306			8	
ERDFYFGK	1	Unmodified	1060.4978	0.49779495	2698;2683	Q15555;Q15691	MAPRE2;MAPRE1	Microtubule-associated protein RP/EB family member 2;Microtubule-associated protein RP/EB family member 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	32.584	31.86	2	0.005606	27387	160511_QHF_FH_JSI11i_3	97.798	79.358			1.2168	1.1866	14.943	4	0	Median	1.6472	1.3387	NaN	1	0	Median	0.81729	0.96029	NaN	1	0	Median	1.3411	1.2723	NaN	1	0	Median	1.1041	1.1066	NaN	1	0	Median	669780000	303050000	366730000	81760000	25452000	56308000	195000000	108360000	86639000	287550000	115230000	172320000	105470000	54010000	51465000	13590	2683;2698	12893	82440;82441;82442;82443	111307;111308;111309;111310;111311;111312;111313	111307			7	
ERDVEELQLK	1	Unmodified	1257.6565	0.65648044	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		31.869	31.202	2	6.9243E-05	26366	160511_QHF_FH_JSI11i_2	105.4	75.142			0.67603	0.74635	9.2297	2	0	Median	NaN	NaN	NaN	0	0	Median	0.57166	0.6992	NaN	1	0	Median	0.79947	0.79669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90865000	55235000	35630000	0	0	0	38789000	26954000	11835000	52076000	28281000	23795000	0	0	0	13591	1360	12894	82444;82445	111314	111314			1	
ERDVILR	0	Unmodified	899.51886	0.51886475	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			15.781	14.992	3	0.0038857	12017	160511_QHF_FH_JSI10i_3	75.738	36.947			0.81417	0.7723	16.907	3	0	Median	0.90974	0.7723	NaN	1	0	Median	0.6798	0.80549	23.662	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	475600000	257240000	218360000	140540000	71150000	69389000	335060000	186090000	148970000	0	0	0	0	0	0	13592	1379	12895	82446;82447;82448	111315;111316;111317;111318	111315			4	
ERDVIMR	0	Unmodified	917.47529	0.47528537	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3.43	3.52		7	6						1	5	4	4	1	12.337	11.187	2;3	0.0013969	9306	160511_QHF_FH_JSI10i_2	100.19	76.216			0.90297	1.016	40.644	14	1	Median	1.2951	1.0338	57.658	5	1	Median	0.8567	1.0226	13.407	4	0	Median	0.69734	0.69206	26.549	4	0	Median	0.94051	1.0201	NaN	1	0	Median	5922900000	2705300000	3217600000	2267800000	893120000	1374700000	2504700000	1290400000	1214400000	1110800000	502100000	608680000	39567000	19748000	19819000	13593	1917;2519	12896	82449;82450;82451;82452;82453;82454;82455;82456;82457;82458;82459;82460;82461;82462	111319;111320;111321;111322;111323;111324;111325;111326;111327;111328;111329;111330;111331;111332;111333	111333			15	
ERDVIMR	0	Oxidation (M)	933.4702	0.4702	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	1	1	By MS/MS			By MS/MS	15	0								2		1			1	10.262	0.75233	3	0.051109	3859	160513_QHF_FH_JSI9Kac_5	34.003	25.772			0.9934	0.95825	10.752	2	0	Median	1.2446	1.0339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79291	0.8881	NaN	1	0	Median	7727900	3734100	3993800	3422900	1637600	1785300	0	0	0	0	0	0	4305000	2096500	2208600	13594	1917;2519	12896	82463;82464	111334;111335	111334			2	
ERDVYEELLTQAEIQGNINK	1	Unmodified	2361.1812	0.18121843	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	84.527	83.924	3	5.2278E-14	72611	160511_QHF_FH_JSI12i_3	142.97	135.4			0.55239	0.60907	45.093	6	1	Median	1.2411	1.0632	NaN	1	0	Median	0.56532	0.69578	NaN	1	0	Median	0.43488	0.42849	30.911	2	1	Median	0.51978	0.55333	57.822	2	0	Median	437530000	281390000	156140000	85776000	39030000	46746000	39960000	24433000	15527000	129980000	90612000	39369000	181820000	127320000	54498000	13595	1600	12897	82465;82466;82467;82468;82469;82470;82471	111336;111337;111338;111339;111340;111341	111339			5	
ERDYLLER	0	Unmodified	1092.5564	0.55637247	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		32.502	31.793	3	0.0098137	25958	160511_QHF_FH_JSI9i_3	39.022	9.5488			1.4738	1.3017	6.8818	2	0	Median	1.552	1.2399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3995	1.3666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	724470000	318620000	405850000	172080000	67758000	104320000	0	0	0	552390000	250860000	301530000	0	0	0	13596	625	12898	82472;82473	111342;111343	111343			2	
EREAELGAK	1	Unmodified	1001.5142	0.5141733	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	7.4379	7.1722	2;3	0.00027235	5005	160511_QHF_FH_JSI9i_2	68.893	36.959			0.96239	0.91388	15.041	12	0	Median	1.1832	1.0081	19.887	2	0	Median	0.89806	1.115	26.789	2	0	Median	0.96239	0.93463	7.1463	4	0	Median	0.80189	0.86542	12.077	4	0	Median	3727200000	2172300000	1554900000	552300000	285950000	266340000	779900000	482690000	297210000	1210800000	675530000	535250000	1184200000	728090000	456130000	13597	2385	12899	82474;82475;82476;82477;82478;82479;82480;82481;82482;82483;82484;82485	111344;111345;111346;111347;111348;111349;111350;111351;111352;111353;111354;111355;111356;111357;111358;111359;111360	111350			17	
EREAELGAR	0	Unmodified	1029.5203	0.52032131	1009;4688	P11940;Q4VXU2;Q9H361	PABPC1;PABPC1L;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		5	5							2	4	3	1	7.6202	7.3528	2;3	1.9796E-07	5325	160511_QHF_FH_JSI10i_2	148.94	60.574			0.83845	0.71705	22.193	9	1	Median	0.83848	0.70649	1.426	2	0	Median	0.58295	0.71705	28.376	3	0	Plateau	0.92692	0.88937	14.82	3	1	Plateau	0.53025	0.52707	NaN	1	0	Median	3776800000	2163500000	1613300000	1036900000	588610000	448240000	1532400000	887150000	645210000	1077300000	610700000	466550000	130300000	76990000	53308000	13598	1009;4688	12900	82486;82487;82488;82489;82490;82491;82492;82493;82494;82495	111361;111362;111363;111364;111365;111366;111367;111368;111369;111370;111371;111372;111373;111374	111373			14	
EREALETER	0	Unmodified	1131.552	0.55201537	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							1	3	3		8.3583	8.0338	2;3	0.00021083	6012	160511_QHF_FH_JSI10i_2	102.06	52.62			1.0357	1.1552	21.914	5	1	Median	1.3288	1.1889	NaN	1	0	Median	0.85609	1.0594	28.315	2	1	Median	0.98597	0.94958	27.716	2	0	Median	NaN	NaN	NaN	0	0	Median	307810000	149910000	157900000	46633000	19981000	26653000	166030000	86288000	79740000	95149000	43643000	51506000	0	0	0	13599	5549	12901	82496;82497;82498;82499;82500;82501;82502	111375;111376;111377;111378;111379;111380;111381;111382;111383	111381			9	
EREDEIATMECINNGK	1	Unmodified	1907.8353	0.8353258	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	1		By matching	By MS/MS	By matching	2	0		3									1	1	1	40.932	40	3	0.0028868	34261	160511_QHF_FH_JSI11i_2	87.647	79.733			0.89424	0.88772	30.219	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99562	1.2131	NaN	1	0	Median	0.89424	0.88772	NaN	1	0	Median	1.4787	1.6245	NaN	1	0	Median	137230000	68038000	69193000	0	0	0	37781000	16530000	21251000	65976000	40440000	25536000	33475000	11069000	22406000	13600	1645	12902	82503;82504;82505	111384	111384			0	
EREEEFK	1	Unmodified	965.44543	0.44542503	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			7.5636	7.1124	3	0.015638	5081	160511_QHF_FH_JSI10i_2	42.109	7.3012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13601	5124	12903	82506	111385	111385			1	
EREEIEK	1	Unmodified	931.46108	0.4610751	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	5.6791	5.4744	2;3	0.0043771	3208	160511_QHF_FH_JSI12i_3	71.379	28.098			0.82604	0.86247	8.9591	7	0	Median	1.077	0.89312	NaN	1	0	Median	0.82604	1.0039	NaN	1	0	Median	0.82019	0.80652	9.4858	2	0	Median	0.77952	0.87033	3.9847	3	0	Plateau	4541100000	2431300000	2109800000	633180000	288730000	344450000	723680000	383160000	340520000	1499200000	845950000	653250000	1685000000	913480000	771530000	13602	2415	12904	82507;82508;82509;82510;82511;82512;82513	111386;111387;111388;111389;111390;111391;111392;111393;111394;111395;111396	111394			11	
EREEMWQK	1	Unmodified	1134.5128	0.51279309	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		15.572	15.572	2;3	0.0078036	12821	160511_QHF_FH_JSI11i_3	88.948	59.799			0.65539	0.58616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65539	0.58616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47747000	24906000	22840000	0	0	0	0	0	0	47747000	24906000	22840000	0	0	0	13603	2570	12905	82514;82515	111397;111398	111398			2	
EREGLENDLK	1	Unmodified	1201.5939	0.59388018	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.743	17.782	3	0.0026335	14353	160511_QHF_FH_JSI12i_3	53.567	34.895			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13604	3766	12906	82516	111399	111399			1	
EREIDDYIVQAK	1	Unmodified	1477.7413	0.7412727	3072	Q6NUK4	REEP3	Receptor expression-enhancing protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.697	42.474	3	0.017645	36257	160511_QHF_FH_JSI12i_3	43.382	32.748			0.42654	0.43923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42654	0.43923	NaN	1	1	Median	23556000	14005000	9550600	0	0	0	0	0	0	0	0	0	23556000	14005000	9550600	13605	3072	12907	82517	111400	111400			1	
ERELEEAR	0	Unmodified	1030.5043	0.5043369	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	7.2143	6.9556	2;3	0.0030888	4723	160511_QHF_FH_JSI11i_2	59.931	4.9491			0.86358	0.91771	17.839	10	0	Median	1.2199	1.0591	17.681	2	0	Median	0.78691	0.96761	11.779	2	0	Median	1.0973	1.1073	17.735	3	0	Median	0.75691	0.76226	10.72	3	0	Median	926180000	480880000	445300000	156490000	83753000	72739000	294880000	164370000	130510000	290350000	132450000	157900000	184460000	100310000	84152000	13606	5616;5628	12908	82518;82519;82520;82521;82522;82523;82524;82525;82526;82527	111401;111402;111403;111404;111405;111406;111407;111408;111409;111410;111411;111412	111408			12	
ERELLGK	1	Unmodified	843.48142	0.48141661	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.386	11.475	3	0.020078	8666	160511_QHF_FH_JSI12i_3	45.68	27.141			2.524	2.5268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.524	2.5268	NaN	1	1	Median	122760000	57247000	65509000	0	0	0	0	0	0	0	0	0	122760000	57247000	65509000	13607	4399	12909	82528	111413	111413			1	
ERELQHAALGGTATR	0	Unmodified	1608.8332	0.83321603	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				17.754	16.594	3	0.022584	13367	160511_QHF_FH_JSI9i_3	36.593	27.543			1.142	0.92642	NaN	1	0	Median	1.142	0.92642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38553000	16401000	22152000	38553000	16401000	22152000	0	0	0	0	0	0	0	0	0	13608	210	12910	82529	111414	111414			1	
ERELQNTVANLHVR	0	Unmodified	1677.8911	0.89106526	253	O15127	SCAMP2	Secretory carrier-associated membrane protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				39.335	37.844	3	0.0014238	30908	160511_QHF_FH_JSI9i_3	50.155	43.718			1.803	1.467	NaN	1	1	Median	1.803	1.467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31268000	11075000	20193000	31268000	11075000	20193000	0	0	0	0	0	0	0	0	0	13609	253	12911	82530	111415	111415			1	
EREMAEMR	0	Unmodified	1050.4586	0.45864903	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.54		8	5						1	2	3	5	4	9.2871	8.3269	2;3	8.9843E-09	6391	160511_QHF_FH_JSI11i_3	173.37	150.35			0.88477	0.94352	17.929	14	0	Median	1.1129	0.92012	3.7717	2	0	Median	0.77304	0.95293	11.234	3	0	Plateau	0.9277	0.90804	27.789	5	0	Median	0.84047	0.92502	9.7244	4	0	Median	6269900000	3189900000	3080100000	1108600000	550100000	558530000	1652000000	832400000	819600000	2780600000	1397000000	1383600000	728670000	410350000	318320000	13610	791	12912	82531;82532;82533;82534;82535;82536;82537;82538;82539;82540;82541;82542;82543;82544	111416;111417;111418;111419;111420;111421;111422;111423;111424;111425;111426;111427;111428;111429;111430;111431;111432;111433;111434;111435	111417			20	
EREMVATQQEMMDAQLR	0	Unmodified	2064.9391	0.93907936	1120	P17568	NDUFB7	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.33	0.471		2	1								1	2		49.307	48.814	3	4.0872E-08	43143	160511_QHF_FH_JSI10i_2	112.3	96.707			0.94089	0.98061	2.1947	3	3	Median	NaN	NaN	NaN	0	0	Median	0.80627	0.98061	NaN	1	1	Median	1.0065	0.99883	2.7153	2	2	Median	NaN	NaN	NaN	0	0	Median	186640000	86069000	100570000	0	0	0	62561000	34646000	27915000	124080000	51423000	72655000	0	0	0	13611	1120	12913	82545;82546;82547	111436;111437;111438	111438			3	
ERENEAKLSELR	1	Unmodified	1472.7583	0.75831975	4933	Q9NQY0	BIN3	Bridging integrator 3	yes	yes	0	0	0	2	By MS/MS				16	0									1	1				56.918	47.743	4	0.053499	25373	160513_QHF_FH_JSI9Kac_6	23.118	3.0216			1.7487	1.5088	NaN	1	0	Median	1.7487	1.5088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9043900	3502400	5541500	9043900	3502400	5541500	0	0	0	0	0	0	0	0	0	13612	4933	12914	82548	111439	111439			0	
EREQPPR	0	Unmodified	910.46208	0.46207815	2644;3809	Q15233;Q8WXF1	NONO;PSPC1	Non-POU domain-containing octamer-binding protein;Paraspeckle component 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.07		1	4					4		3	3	2	1	4.7547	0.3469	2;3	0.0010552	2230	160511_QHF_FH_JSI10i_3	104.21	83.339			1.3012	1.1543	7.395	9	1	Median	1.3701	1.1579	7.6211	3	0	Median	0.94819	1.0938	1.1902	3	1	Median	1.315	1.272	1.2827	2	0	Median	1.0534	1.1543	NaN	1	0	Median	2863800000	1299500000	1564200000	1091700000	447090000	644610000	1455900000	712030000	743850000	276470000	121010000	155460000	39707000	19395000	20312000	13613	2644;3809	12915	82549;82550;82551;82552;82553;82554;82555;82556;82557	111440;111441;111442;111443;111444;111445;111446;111447;111448	111440			9	
ERESDLSSK	1	Unmodified	1049.4989	0.49891717	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	2	3	5.5349	5.3123	2	0.0026572	3174	160511_QHF_FH_JSI11i_3	106.88	75.577			1.8377	1.8932	38.665	5	5	Median	NaN	NaN	NaN	0	0	Median	0.78467	0.95485	NaN	1	1	Median	1.7002	1.6599	31.695	2	2	Median	2.036	2.1845	20.237	2	2	Median	1019100000	351600000	667490000	0	0	0	160600000	70305000	90296000	380140000	128500000	251640000	478340000	152790000	325550000	13614	3328	12916	82558;82559;82560;82561;82562;82563	111449;111450;111451;111452;111453;111454	111449			6	
ERESIMK	1	Unmodified	891.4484	0.44840192	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.25	0.433		3	1							1	2	1		8.4032	7.9786	3	0.0041964	5717	160511_QHF_FH_JSI10i_3	73.26	41.971			1.1965	1.2526	20.992	4	0	Median	1.1326	0.97563	NaN	1	0	Median	1.195	1.4212	19.438	2	0	Median	1.2639	1.2666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1331800000	667960000	663790000	359120000	181200000	177930000	868860000	431050000	437810000	103770000	55714000	48057000	0	0	0	13615	1481	12917	82564;82565;82566;82567	111455;111456;111457	111455			3	
ERESLQQMAEVTR	0	Oxidation (M)	1591.7624	0.76241885	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	4.36		1	1				1	8	4	2	6	2	5	24.846	17.499	3	0.00044398	9977	160513_QHF_FH_JSI10Kac_5	75.669	70.954			0.89474	0.96463	18.03	12	1	Median	1.0922	0.9114	31.866	2	0	Median	0.77215	0.88086	12.782	5	1	Median	0.9827	0.96589	NaN	1	0	Median	1.0236	1.1096	17.793	4	0	Median	167260000	90066000	77198000	15882000	7390800	8490800	87761000	51864000	35897000	14063000	6507300	7556000	49558000	24304000	25254000	13616	1050	12918	82568;82569;82570;82571;82572;82573;82574;82575;82576;82577;82578;82579;82580;82581;82582	111458;111459;111460;111461;111462;111463;111464;111465;111466;111467;111468;111469;111470;111471;111472;111473	111469		670	15	
ERESLQQMAEVTR	0	Unmodified	1575.7675	0.76750423	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	6.87	6.33		6	4					1	4	5	5	4	1	39.437	35.673	2;3	1.2519E-29	31361	160511_QHF_FH_JSI10i_2	184.98	155.21			1.0158	0.97874	15	15	1	Median	1.1341	0.9572	18.666	5	0	Median	0.86218	0.98455	8.5318	5	0	Median	1.0547	0.9983	19.165	4	1	Median	1.0945	1.1551	NaN	1	0	Median	2609400000	1295500000	1313900000	627460000	271410000	356050000	1504800000	801480000	703360000	409910000	192800000	217110000	67214000	29813000	37401000	13617	1050	12918	82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597	111474;111475;111476;111477;111478;111479;111480;111481;111482;111483;111484;111485;111486;111487	111486			14	
ERETPPR	0	Unmodified	883.45118	0.45117911	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	5.2			1					3			2	1	1	4.9643	-2.2518	3	0.0084759	2309	160511_QHF_FH_JSI10i_3	53.968	18.523			0.96598	1.0722	23.284	4	1	Median	NaN	NaN	NaN	0	0	Median	0.88846	1.0242	29.453	2	1	Median	1.348	1.3278	NaN	1	0	Median	0.84109	0.91148	NaN	1	0	Median	872220000	405120000	467100000	0	0	0	812600000	377210000	435400000	35960000	15226000	20734000	23657000	12688000	10970000	13618	1222	12919	82598;82599;82600;82601	111488;111489;111490;111491	111488			4	
EREVLQLQEEVK	1	Unmodified	1498.7991	0.79912193	4550	Q9BYN8	MRPS26	28S ribosomal protein S26, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		41.418	41.418	2	0.0025841	36464	160511_QHF_FH_JSI11i_3	70.977	45.54			1.2115	1.1533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2115	1.1533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36852000	19492000	17360000	0	0	0	0	0	0	36852000	19492000	17360000	0	0	0	13619	4550	12920	82602	111492	111492			1	
EREVVNK	1	Unmodified	872.47158	0.4715802	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.81	4.81	3	0.0058902	2503	160511_QHF_FH_JSI11i_3	63.565	32.336			0.75399	0.7096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75399	0.7096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	404570000	201180000	203390000	0	0	0	0	0	0	404570000	201180000	203390000	0	0	0	13620	1411	12921	82603	111493	111493			1	
ERFAGVDIR	0	Unmodified	1061.5618	0.56179219	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		2	6						4	4	4	2	2	39.084	35.344	2;3	9.9839E-06	29521	160511_QHF_FH_JSI10i_3	90.104	58.169			1.1156	1.0593	14.591	12	0	Median	1.2958	1.0593	12.844	4	0	Median	0.93256	1.1107	17.49	4	0	Median	1.1396	1.0939	12.211	2	0	Median	0.97556	1.0223	26.205	2	0	Median	3521600000	1679800000	1841900000	2160500000	980870000	1179700000	1145600000	592540000	553030000	160480000	76206000	84277000	55045000	30133000	24913000	13621	1987	12922	82604;82605;82606;82607;82608;82609;82610;82611;82612;82613;82614;82615	111494;111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505;111506;111507;111508;111509;111510;111511;111512;111513;111514	111498			20	
ERFDSNCITPGTEFMDNLAK	1	Unmodified	2344.0464	0.046381205	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.548	76.271	3	0.006196	66229	160511_QHF_FH_JSI12i_3	42.123	32.959			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13622	4628	12923	82616	111515	111515			1	
ERFEFLK	1	Unmodified	967.51272	0.51271674	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	43.285	42.447	3	0.0063673	34912	160511_QHF_FH_JSI9i_3	61.962	42.485			0.791	0.70288	61.674	4	0	Median	0.86573	0.71623	NaN	1	0	Median	1.169	1.3699	NaN	1	0	Median	0.72273	0.68977	NaN	1	0	Median	0.29339	0.30401	NaN	1	0	Median	338510000	186280000	152240000	75387000	32893000	42494000	57101000	29170000	27931000	166670000	96275000	70398000	39352000	27938000	11414000	13623	1194	12924	82617;82618;82619;82620	111516;111517;111518;111519;111520;111521	111521			6	
ERFGIVTSSAGTGTTEDTEAK	1	Unmodified	2156.0233	0.023320802	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		8.22	6.53		3	2					2	2	4	4	1		42.892	38.361	3	6.7221E-16	32030	160511_QHF_FH_JSI10i_3	139.7	130.17			1.1966	1.0627	17.272	8	2	Median	1.2109	1.0141	6.9807	3	0	Median	0.95799	1.1424	19.738	4	2	Median	1.4385	1.4223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	738870000	356120000	382760000	351020000	165960000	185070000	381010000	187400000	193610000	6843400	2762500	4080900	0	0	0	13624	2117	12925	82621;82622;82623;82624;82625;82626;82627;82628;82629	111522;111523;111524;111525;111526;111527;111528;111529;111530;111531;111532;111533;111534;111535;111536	111524			15	
ERGDYVLAVK	1	Unmodified	1148.619	0.61897272	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	4	3	1	30.731	29.953	2;3	3.4097E-05	25000	160511_QHF_FH_JSI12i_3	121.83	89.609			0.98988	0.99437	51.891	11	3	Median	0.96227	0.81899	10.76	3	1	Plateau	1.0088	1.184	51.712	4	1	Median	1.1284	1.0601	75.902	3	1	Median	0.78588	0.81359	NaN	1	0	Median	1182000000	609500000	572520000	169450000	87612000	81838000	295200000	161680000	133520000	573150000	281930000	291210000	144220000	78269000	65952000	13625	512	12926	82630;82631;82632;82633;82634;82635;82636;82637;82638;82639;82640	111537;111538;111539;111540;111541;111542;111543;111544;111545;111546;111547;111548	111547			12	
ERGIGDIK	1	Unmodified	886.48723	0.48723027	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1			By MS/MS		3	0			1									1		12.824	12.824	3	0.020642	10306	160511_QHF_FH_JSI11i_3	36.334	10.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13626	1685;31;191	12927	82641	111549	111549			1	
ERGLEFLSVPSTYYK	1	Unmodified	1787.9094	0.90940066	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	75.287	74.79	2;3	8.0662E-05	64761	160511_QHF_FH_JSI12i_3	89.541	77.395			0.9698	0.93889	10.416	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.68875	0.75996	NaN	1	1	Median	1.0356	0.97673	NaN	1	0	Median	0.81875	0.84694	2.7779	2	1	Median	427020000	212430000	214590000	0	0	0	30196000	17761000	12435000	195220000	88939000	106280000	201600000	105730000	95879000	13627	1395	12928	82642;82643;82644;82645	111550;111551;111552;111553;111554;111555;111556	111555			7	
ERGTGDVKLLK	2	Acetyl (K)	1256.7089	0.70885036	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	1	0	0	2		By matching	By MS/MS		15	0								3			1	2		40.26	30.267	3	0.0091174	17376	160513_QHF_FH_JSI11Kac_5	57.019	23.795			0.28392	0.27867	81.237	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98697	1.1381	NaN	1	0	Median	0.28392	0.27867	0	2	0	Median	NaN	NaN	NaN	0	0	Median	25264000	19008000	6255900	0	0	0	3178600	1582100	1596600	22085000	17426000	4659300	0	0	0	13628	1565	12929	82646;82647;82648	111557	111557	1578		1	
ERGTVLAEDQLAQMSK	1	Unmodified	1774.8883	0.88834765	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.646	48.646	3	1.926E-05	42973	160511_QHF_FH_JSI11i_3	95.873	80.238			0.94779	0.88962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94779	0.88962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96064000	51594000	44469000	0	0	0	0	0	0	96064000	51594000	44469000	0	0	0	13629	4102	12930	82649	111558;111559	111558			2	
ERGTVYFK	1	Unmodified	998.51853	0.5185304	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.62	0.484		3	5							4	3	1		17.698	16.83	2;3	0.0046685	13309	160511_QHF_FH_JSI9i_3	49.418	33.756			0.7369	0.67941	25.786	8	0	Median	0.93185	0.7673	34.123	4	0	Median	0.56564	0.64003	8.3883	3	0	Median	0.82647	0.76221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3036900000	1619000000	1417900000	1561000000	780000000	780960000	747990000	479270000	268720000	727940000	359710000	368230000	0	0	0	13630	2193	12931	82650;82651;82652;82653;82654;82655;82656;82657	111560;111561;111562;111563;111564;111565;111566;111567;111568;111569	111565			10	
ERGYDGFFSPK	1	Unmodified	1301.6041	0.60405094	4167	Q96LI5	CNOT6L	CCR4-NOT transcription complex subunit 6-like	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			43.579	42.045	3	0.060119	35139	160511_QHF_FH_JSI10i_3	28.903	27.138			0.62573	0.74259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62573	0.74259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18814000	11406000	7408200	0	0	0	18814000	11406000	7408200	0	0	0	0	0	0	13631	4167	12932	82658	111570	111570			1	
ERHPGSFDVVHVK	1	Unmodified	1505.7739	0.77391024	2013;1204	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	1	By MS/MS				3	0			2							2				36.424	34.966	4	0.012539	28696	160511_QHF_FH_JSI9i_3	43.761	39.659			0.405	0.33043	13.583	2	2	Median	0.405	0.33043	13.583	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73543000	50919000	22624000	73543000	50919000	22624000	0	0	0	0	0	0	0	0	0	13632	2013;1204	12933	82659;82660	111571;111572	111572			2	
ERIDFLPHYDTLVK	1	Unmodified	1744.9148	0.91482039	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	70.354	70.205	4	3.025E-05	62497	160511_QHF_FH_JSI11i_3	102.28	92.355			1.0638	1.032	15.96	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2225	1.1553	NaN	1	0	Median	0.92561	0.92183	NaN	1	0	Median	126520000	60724000	65793000	0	0	0	0	0	0	65585000	32173000	33412000	60933000	28551000	32382000	13633	28	12934	82661;82662	111573;111574;111575;111576	111573			4	
ERIEIEQNYAK	1	Unmodified	1391.7045	0.70449327	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	29.199	29.172	3	3.0827E-05	25181	160511_QHF_FH_JSI11i_3	99.215	86.259			0.093339	0.092003	99.613	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.047918	0.045488	NaN	1	1	Median	0.18181	0.18608	NaN	1	1	Median	1523200000	1429400000	93727000	0	0	0	0	0	0	1234200000	1190600000	43667000	288930000	238870000	50060000	13634	2934	12935	82663;82664	111577;111578	111577			2	
ERILQEHEQIK	1	Unmodified	1421.7627	0.76267685	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		20.285	19.391	3	0.00012836	16052	160511_QHF_FH_JSI10i_3	88.101	58.798			0.90491	1.0228	98.156	4	4	Median	0.23778	0.19592	NaN	1	1	Median	0.90491	1.0228	20.37	2	2	Median	2.0406	1.9013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	329270000	182330000	146950000	23417000	17621000	5796000	260790000	151540000	109260000	45063000	13169000	31894000	0	0	0	13635	2502	12936	82665;82666;82667;82668;82669	111579;111580;111581;111582;111583	111582			5	
ERIMNEEDPEK	1	Unmodified	1388.6242	0.62419403	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	2	3		16.563	16.115	2;3	1.0103E-09	13250	160511_QHF_FH_JSI11i_3	129.87	116.47			0.89495	0.98576	18.446	5	2	Median	1.6152	1.3716	NaN	1	0	Median	0.8283	1.0223	5.1475	2	2	Median	0.96677	0.89228	10.081	2	0	Median	NaN	NaN	NaN	0	0	Median	295670000	148070000	147600000	51615000	29271000	22345000	110610000	60584000	50024000	133450000	58218000	75234000	0	0	0	13636	3959	12937	82670;82671;82672;82673;82674;82675	111584;111585;111586;111587;111588;111589	111585			5	
ERIPEAPAGPPSDFGLFLSDDDPKK	2	Unmodified	2697.3286	0.32861095	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		80.784	80.784	4	0.0020867	72192	160511_QHF_FH_JSI11i_3	37.637	34.704			0.87579	0.84091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87579	0.84091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54828000	26357000	28471000	0	0	0	0	0	0	54828000	26357000	28471000	0	0	0	13637	5616	12938	82676	111590;111591	111590			2	
ERISEQTYQLSR	0	Unmodified	1508.7583	0.75831975	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			28.561	27.217	3	0.0024077	22491	160511_QHF_FH_JSI10i_3	51.211	39.597			0.97478	0.86311	34.708	3	1	Plateau	1.3055	1.0363	NaN	1	0	Median	1.0311	1.1646	48.15	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93105000	45671000	47434000	30002000	15077000	14925000	63103000	30594000	32509000	0	0	0	0	0	0	13638	1962	12939	82677;82678;82679	111592;111593	111592			2	
ERISVAAASK	1	Unmodified	1030.5771	0.57710791	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			4							2	2			14.471	13.558	2;3	0.0011437	10682	160511_QHF_FH_JSI9i_3	58.274	34.244			1.0663	1.1419	25.913	4	0	Linear	1.119	0.90653	10.425	2	0	Median	1.2045	1.3965	6.234	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	492510000	230430000	262080000	309910000	146200000	163710000	182590000	84226000	98365000	0	0	0	0	0	0	13639	1303	12940	82680;82681;82682;82683	111594;111595	111594			2	
ERIVEEANK	1	Unmodified	1086.5669	0.56693715	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	4.64		2	3					1		1	1	3	1	9.6474	9.4443	2;3	5.9587E-05	7028	160511_QHF_FH_JSI11i_3	81.017	64.484			1.3738	1.2405	45.064	5	2	Median	1.4778	1.2405	NaN	1	0	Median	0.97536	1.2087	NaN	1	0	Median	1.3738	1.312	61.769	3	2	Median	NaN	NaN	NaN	0	0	Median	590700000	275100000	315610000	67605000	28286000	39319000	79954000	35606000	44348000	443150000	211210000	231940000	0	0	0	13640	1355	12941	82684;82685;82686;82687;82688;82689	111596;111597;111598;111599;111600;111601;111602	111596			7	
ERLAAFYGV	0	Unmodified	1024.5342	0.53418046	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	57.955	57.828	2	0.018668	49710	160511_QHF_FH_JSI12i_3	63.419	53.432			1.3184	1.2952	6.3079	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3089	1.2387	NaN	1	0	Median	1.328	1.3543	NaN	1	0	Median	409310000	175710000	233600000	0	0	0	0	0	0	164290000	67372000	96921000	245010000	108340000	136680000	13641	3914;205	12942	82690;82691	111603	111603			1	
ERLDEELK	1	Unmodified	1030.5295	0.52948901	5589	Q9Y3D7	PAM16	Mitochondrial import inner membrane translocase subunit TIM16	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	21.639	20.821	2	0.024605	17197	160511_QHF_FH_JSI12i_2	76.827	26.22			0.62304	0.70654	17.846	3	0	Plateau	0.83638	0.70654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61058	0.61565	NaN	1	0	Median	0.78798	0.87717	NaN	1	0	Median	241430000	134700000	106730000	52904000	28039000	24865000	0	0	0	115160000	69356000	45802000	73368000	37301000	36067000	13642	5589	12943	82692;82693;82694	111604;111605;111606;111607;111608	111604			5	
ERLDPETLESLGLIK	1	Unmodified	1711.9356	0.93561541	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	85.674	85.598	3	0.00081862	74180	160511_QHF_FH_JSI12i_3	68.944	55.963			0.52465	0.50371	38.318	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42392	0.38415	NaN	1	1	Median	0.64931	0.66046	NaN	1	1	Median	116110000	69496000	46617000	0	0	0	0	0	0	52816000	33454000	19362000	63297000	36042000	27255000	13643	3675	12944	82695;82696	111609;111610	111610			2	
ERLDQPMTEIVSR	0	Oxidation (M)	1588.7879	0.78790532	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	9	6			3					3		1		2	3	36.523	30.545	3	0.00015249	26795	160511_QHF_FH_JSI11i_3	83.499	60.697			1.0859	1.1163	26.636	5	1	Median	1.3083	1.1163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84826	0.83394	26.083	2	0	Median	1.2115	1.3095	9.3133	2	1	Median	139200000	63153000	76044000	4924500	2037200	2887400	0	0	0	71922000	37925000	33997000	62350000	23191000	39159000	13644	1208	12945	82697;82698;82699;82700;82701;82702	111611;111612;111613;111614;111615;111616;111617	111611		833	7	
ERLDQPMTEIVSR	0	Unmodified	1572.793	0.7929907	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.575	1	7	3							2	3	4	2	48.696	48.047	2;3	1.7198E-30	42354	160511_QHF_FH_JSI10i_2	195.77	168.88			0.92756	0.93273	15.364	11	0	Median	1.1043	0.93522	4.5028	2	0	Median	0.72136	0.87091	27.672	3	0	Plateau	0.94896	0.93243	3.1183	4	0	Median	0.82541	0.87488	12.83	2	0	Median	4821800000	2469100000	2352600000	805510000	362700000	442810000	1591500000	904900000	686630000	2242900000	1111500000	1131400000	181810000	90034000	91779000	13645	1208	12945	82703;82704;82705;82706;82707;82708;82709;82710;82711;82712;82713	111618;111619;111620;111621;111622;111623;111624;111625;111626;111627;111628;111629;111630;111631;111632;111633	111630			16	
ERLEQDLQQMQAK	1	Unmodified	1615.7988	0.79880436	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	3	2	40.129	39.406	2;3	7.0681E-05	34593	160511_QHF_FH_JSI10i_2	68.463	64.346			1.0387	1.0734	23.009	9	2	Median	1.6411	1.4194	23.797	2	0	Median	0.97931	1.2036	30.629	2	0	Median	0.97496	0.89855	11.654	3	2	Median	0.97794	1.0219	12.498	2	0	Median	371000000	179430000	191570000	90922000	37479000	53443000	80813000	44089000	36724000	156820000	76915000	79909000	42443000	20951000	21492000	13646	1016	12946	82714;82715;82716;82717;82718;82719;82720;82721;82722	111634;111635;111636;111637;111638;111639;111640;111641;111642;111643;111644;111645;111646;111647	111644			14	
ERLEQEQLER	0	Unmodified	1328.6684	0.66844211	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	4	1	17.529	17.222	2;3	6.8386E-06	14592	160511_QHF_FH_JSI10i_2	86.911	27.712			0.6704	0.65436	33.049	6	4	Median	0.85122	0.72028	NaN	1	1	Median	0.47951	0.59447	NaN	1	0	Median	1.1382	0.57479	40.427	3	2	Plateau	0.49484	0.51289	NaN	1	1	Median	358040000	233260000	124780000	50656000	27242000	23413000	80582000	63013000	17570000	202060000	126360000	75698000	24744000	16648000	8096500	13647	3570	12947	82723;82724;82725;82726;82727;82728;82729;82730	111648;111649;111650;111651;111652;111653;111654;111655;111656	111655			9	
ERLEQIK	1	Unmodified	914.51853	0.5185304	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	11.779	11.823	3	0.0066474	9045	160511_QHF_FH_JSI12i_3	60.118	17.722			0.85274	0.84788	12.702	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79378	0.77505	NaN	1	0	Median	0.91609	0.92757	NaN	1	0	Median	1251800000	730250000	521530000	0	0	0	0	0	0	542060000	325010000	217060000	709720000	405250000	304470000	13648	2502	12948	82731;82732	111657;111658	111658			2	
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	Oxidation (M)	2986.507	0.50698602	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	86.61	86.131	3	9.6149E-17	74607	160511_QHF_FH_JSI12i_3	100.29	95.084			0.92558	1.0329	10.192	8	4	Median	1.2395	1.0842	4.4064	2	2	Median	0.87226	1.0832	3.7271	2	2	Median	0.94853	0.88838	2.3165	2	0	Median	0.89153	0.94808	9.6765	2	0	Median	475330000	243870000	231460000	62902000	27942000	34960000	59903000	31588000	28316000	131370000	67883000	63485000	221160000	116460000	104700000	13649	1484	12949	82733;82734;82735;82736;82737;82738;82739;82740	111659;111660;111661;111662;111663;111664;111665;111666;111667;111668;111669;111670;111671;111672;111673;111674;111675;111676;111677;111678	111676		1164	20	
ERLEQQVPVNQVFGQDEMIDVIGVTK	1	Unmodified	2970.5121	0.5120714	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.617	3	18	12							6	8	9	10	98.137	98.031	3;4	8.5437E-37	86424	160511_QHF_FH_JSI11i_3	168.92	162.48			0.88771	0.9255	16.481	27	11	Median	1.2465	1.0906	15.279	5	2	Median	0.74124	0.91488	10.716	7	3	Median	0.96574	0.9255	13.802	7	3	Median	0.83532	0.83424	21.02	8	3	Median	2268400000	1220700000	1047600000	190690000	88433000	102260000	373890000	221450000	152440000	738440000	390830000	347610000	965340000	520010000	445330000	13650	1484	12949	82741;82742;82743;82744;82745;82746;82747;82748;82749;82750;82751;82752;82753;82754;82755;82756;82757;82758;82759;82760;82761;82762;82763;82764;82765;82766;82767;82768;82769;82770;82771;82772;82773	111679;111680;111681;111682;111683;111684;111685;111686;111687;111688;111689;111690;111691;111692;111693;111694;111695;111696;111697;111698;111699;111700;111701;111702;111703;111704;111705;111706;111707;111708;111709;111710;111711;111712;111713;111714;111715;111716;111717;111718;111719;111720;111721;111722;111723;111724;111725;111726;111727;111728;111729;111730;111731;111732;111733;111734;111735;111736;111737;111738;111739;111740;111741;111742;111743;111744;111745;111746;111747;111748;111749;111750	111681			71	
ERLESLNIQR	0	Unmodified	1256.6837	0.68369824	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							3	2			32.567	31.24	2;3	1.9508E-05	25508	160511_QHF_FH_JSI9i_3	91.656	74.22			1.2743	1.2385	21.32	5	1	Median	1.7023	1.448	22.327	3	0	Median	0.94442	1.0814	19.173	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	754620000	317080000	437540000	397780000	142210000	255570000	356840000	174870000	181970000	0	0	0	0	0	0	13651	2502	12950	82774;82775;82776;82777;82778	111751;111752;111753;111754;111755;111756;111757	111755			7	
ERLFEGIIK	1	Unmodified	1103.6339	0.63389451	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		56.041	55.007	3	0.00054023	48347	160511_QHF_FH_JSI11i_3	76.927	65.196			1.309	1.0676	39.329	3	1	Plateau	0.95329	0.78724	NaN	1	0	Median	0.90038	1.0676	NaN	1	0	Median	1.7974	1.7179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64018000	27283000	36736000	18771000	9241900	9529000	15410000	9437500	5972500	29837000	8603200	21234000	0	0	0	13652	221	12951	82779;82780;82781	111758;111759;111760;111761	111758			4	
ERLGLPPK	1	Unmodified	908.54435	0.54435122	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		23.516	22.888	3	0.018143	19264	160511_QHF_FH_JSI10i_3	38.086	7.0126			0.81099	0.83879	9.8647	2	2	Median	NaN	NaN	NaN	0	0	Median	0.68775	0.78227	NaN	1	1	Median	0.95631	0.89938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69989000	35399000	34590000	0	0	0	34197000	17843000	16355000	35792000	17556000	18236000	0	0	0	13653	853	12952	82782;82783;82784;82785	111762;111763;111764;111765	111764			4	
ERLLDEWFTLDEVPK	1	Unmodified	1888.9571	0.95707914	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	98.143	98.153	3	0.00514	87481	160511_QHF_FH_JSI11i_3	52.026	47.478			1.4644	1.4138	0.18444	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4945	1.4119	NaN	1	1	Median	1.4348	1.4156	NaN	1	0	Median	50339000	22518000	27821000	0	0	0	0	0	0	22657000	11127000	11530000	27682000	11392000	16290000	13654	6	12953	82786;82787	111766;111767	111766			2	
ERLMDVMAK	1	Unmodified	1091.5467	0.54673576	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			7							2	3	2		38.97	37.905	2;3	0.00010025	30978	160511_QHF_FH_JSI9i_3	120.12	102.73			1.0194	0.97192	23.608	7	2	Median	1.1686	0.96365	34.861	2	0	Median	0.81196	0.90861	32.225	3	2	Median	1.0539	1.0013	4.2189	2	0	Median	NaN	NaN	NaN	0	0	Median	805540000	385610000	419930000	217830000	94361000	123470000	293030000	172160000	120870000	294680000	119090000	175590000	0	0	0	13655	2319	12954	82788;82789;82790;82791;82792;82793;82794	111768;111769;111770;111771;111772;111773	111772			6	
ERLQEELSQAESTIDELK	1	Unmodified	2117.0488	0.048807271	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			87.412	86.856	3	0.0005643	77112	160511_QHF_FH_JSI10i_2	62.658	51.232			2.3107	2.8517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3107	2.8517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22395000	5261600	17134000	0	0	0	22395000	5261600	17134000	0	0	0	0	0	0	13656	2516	12955	82795	111774	111774			1	
ERLTEELK	1	Unmodified	1016.5502	0.55022446	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	20.242	19.664	2	0.022215	15914	160511_QHF_FH_JSI12i_3	73.985	17.256			0.76791	0.77946	21.029	3	0	Plateau	1.3125	1.1301	NaN	1	0	Median	0.87894	1.0909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76791	0.77235	NaN	1	0	Median	181160000	97509000	83650000	38541000	18550000	19992000	48198000	27799000	20398000	0	0	0	94420000	51160000	43260000	13657	2560	12956	82796;82797;82798	111775	111775			1	
ERNGETINTR	0	Unmodified	1188.5847	0.58471248	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			5.7803	5.284	3	0.0015519	3379	160511_QHF_FH_JSI10i_3	56.202	45.844			0.57073	0.66987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57073	0.66987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44777000	28105000	16672000	0	0	0	44777000	28105000	16672000	0	0	0	0	0	0	13658	2453	12957	82799	111776	111776			1	
ERNGLSLAALK	1	Unmodified	1170.6721	0.67207093	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		41.968	40.936	3	0.00011658	33508	160511_QHF_FH_JSI9i_3	77.593	30.702			0.76	0.923	36.702	3	0	Median	1.5522	1.2327	NaN	1	0	Median	0.76	0.923	NaN	1	0	Median	0.62266	0.5947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325250000	157310000	167950000	163810000	63047000	100760000	80031000	51142000	28890000	81413000	43119000	38294000	0	0	0	13659	1097	12958	82800;82801;82802	111777;111778;111779;111780;111781	111781			5	
ERNMLLTLEQEAK	1	Unmodified	1573.8134	0.81339179	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		63.708	62.925	2;3	6.1492E-05	52793	160511_QHF_FH_JSI10i_3	72.417	58.387			0.71768	0.82972	31.033	3	2	Median	NaN	NaN	NaN	0	0	Median	0.53948	0.64458	35.708	2	1	Median	0.92944	0.88103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79687000	47371000	32316000	0	0	0	55315000	33258000	22058000	24372000	14114000	10258000	0	0	0	13660	4871	12959	82803;82804;82805	111782;111783;111784	111783			3	
ERNTDQASMPDNTAAQK	1	Unmodified	1875.8381	0.83810299	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.35	4.18	8	9	3				3			4	5	8	6	14.004	12.396	2;3	8.1859E-09	9896	160511_QHF_FH_JSI11i_2	104.1	93.311			0.97247	1.0705	17.73	20	2	Median	1.1369	0.97274	32.322	4	1	Median	0.88959	1.0936	9.9873	5	0	Median	1.1481	1.1142	12.356	6	1	Median	0.95712	0.97984	4.8721	5	0	Median	3025100000	1523700000	1501400000	641730000	301390000	340350000	829800000	444470000	385340000	816850000	377190000	439650000	736740000	400680000	336060000	13661	1436;1445	12960	82806;82807;82808;82809;82810;82811;82812;82813;82814;82815;82816;82817;82818;82819;82820;82821;82822;82823;82824;82825;82826;82827;82828	111785;111786;111787;111788;111789;111790;111791;111792;111793;111794;111795;111796;111797;111798;111799;111800;111801;111802;111803;111804;111805;111806;111807;111808;111809;111810;111811;111812;111813;111814;111815;111816;111817;111818;111819;111820;111821	111812			37	
ERNTDQASMPDNTAAQK	1	Oxidation (M)	1891.833	0.83301761	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.54	8	3					1			3	2	2	5	9.3598	8.2532	3	1.232E-05	3975	160511_QHF_FH_JSI11i_1	96.666	84.897			0.92598	0.95679	31.009	11	4	Median	1.593	1.3526	51.184	3	2	Median	0.83947	1.0186	14.371	2	0	Median	1.135	1.0727	16.355	2	1	Median	0.77841	0.82072	26.085	4	1	Median	506050000	256200000	249850000	109340000	42558000	66777000	102000000	51759000	50237000	129700000	62804000	66895000	165020000	99083000	65940000	13662	1436;1445	12960	82829;82830;82831;82832;82833;82834;82835;82836;82837;82838;82839;82840	111822;111823;111824;111825;111826;111827;111828;111829;111830;111831;111832;111833;111834;111835;111836;111837	111822		1097	16	
ERNVEDLSGGELQR	0	Unmodified	1600.7805	0.78051176	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							3	2	3	2	30.651	30.062	2;3	2.163E-05	25325	160511_QHF_FH_JSI12i_3	100.11	82.525			0.97432	0.96802	19.26	10	2	Median	1.0126	0.84586	31.642	3	2	Median	0.80456	0.97939	4.8968	2	0	Median	1.0793	1.1135	12.304	3	0	Median	0.83176	0.8511	21.45	2	0	Median	667730000	352820000	314900000	160800000	64783000	96019000	159490000	97220000	62265000	263460000	141390000	122070000	83980000	49432000	34548000	13663	1945	12961	82841;82842;82843;82844;82845;82846;82847;82848;82849;82850	111838;111839;111840;111841;111842;111843;111844;111845;111846;111847;111848;111849;111850;111851;111852	111852			15	
ERPDLPPIQYEPVLCSR	0	Unmodified	2068.0412	0.041159893	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			72.356	70.9	3	0.018797	59436	160511_QHF_FH_JSI10i_3	40.798	25.644			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7139200	7139200	0	0	0	0	7139200	7139200	0	0	0	0	0	0	0	13664	2674	12962	82851	111853	111853			1	
ERPDVGVYIK	1	Unmodified	1174.6346	0.63462279	5617	Q9Y496	KIF3A	Kinesin-like protein KIF3A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	37.279	37.197	3	0.0010544	31567	160511_QHF_FH_JSI12i_3	53.252	36.021			0.88502	0.85582	16.493	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81852	0.76161	NaN	1	0	Median	0.95691	0.96168	NaN	1	0	Median	56196000	27660000	28536000	0	0	0	0	0	0	20000000	10318000	9681600	36197000	17342000	18855000	13665	5617	12963	82852;82853	111854;111855	111855			2	
ERPGLGSENMDR	0	Unmodified	1359.6201	0.62011171	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			17.338	16.327	3	0.001143	13198	160511_QHF_FH_JSI10i_3	57.034	49.468			0.79525	0.88707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79525	0.88707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39594000	24251000	15343000	0	0	0	39594000	24251000	15343000	0	0	0	0	0	0	13666	3377	12964	82854	111856	111856			1	
ERPIILDPADPTLNVAEGYR	0	Unmodified	2238.1644	0.16444615	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				77.639	76.892	3	0.022799	67845	160511_QHF_FH_JSI9i_2	30.587	17.697			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13667	2693	12965	82855	111857	111857			1	
ERPPEEVAAR	0	Unmodified	1152.5887	0.58873523	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	4.62	3	8	6					3		4	4	6	6	12.641	10.867	2;3	5.322E-08	8665	160511_QHF_FH_JSI12i_3	104.82	74.027			1.0673	1.0908	15.294	19	0	Median	1.2366	1.0496	2.5641	3	0	Plateau	0.95412	1.1537	10.403	4	0	Median	1.1121	1.1063	9.1783	6	0	Median	0.95304	1.0205	26.026	6	0	Median	2167700000	1012700000	1155000000	346230000	142310000	203920000	516300000	277120000	239180000	825440000	361690000	463750000	479740000	231560000	248180000	13668	2780	12966	82856;82857;82858;82859;82860;82861;82862;82863;82864;82865;82866;82867;82868;82869;82870;82871;82872;82873;82874;82875	111858;111859;111860;111861;111862;111863;111864;111865;111866;111867;111868;111869;111870;111871;111872;111873;111874;111875;111876	111875			19	
ERPPFIPEGVVAR	0	Unmodified	1465.8041	0.80414773	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			59.485	57.953	3	0.00059157	47464	160511_QHF_FH_JSI9i_3	54.276	48.128			1.0054	0.97497	0.91859	2	1	Median	1.2096	0.98133	NaN	1	0	Median	0.83569	0.96866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156170000	74464000	81710000	86507000	38560000	47947000	69668000	35904000	33763000	0	0	0	0	0	0	13669	4559	12967	82876;82877	111877;111878;111879	111878			3	
ERPPNPIEFLASYLLK	1	Unmodified	1886.0302	0.030184502	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	4	3	4	2	101.67	98.571	2;3	3.5347E-06	89821	160511_QHF_FH_JSI12i_3	122.31	104.39			0.90342	0.89488	8.1203	11	3	Median	0.91995	0.77509	10.367	2	0	Median	0.78961	0.91958	1.6777	3	0	Plateau	0.9582	0.88427	3.7542	4	2	Median	0.88088	0.93309	8.7185	2	1	Median	827960000	441480000	386470000	149070000	86061000	63009000	209420000	118540000	90879000	328860000	162660000	166200000	140610000	74223000	66384000	13670	4576	12968	82878;82879;82880;82881;82882;82883;82884;82885;82886;82887;82888;82889;82890	111880;111881;111882;111883;111884;111885;111886;111887;111888;111889;111890;111891;111892;111893;111894;111895;111896;111897;111898;111899;111900;111901;111902;111903;111904	111902			25	
ERPQIGGTIK	1	Unmodified	1097.6193	0.61930707	1031	P13498	CYBA	Cytochrome b-245 light chain	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				20.147	18.924	3	0.0047433	15112	160511_QHF_FH_JSI9i_3	52.693	36.49			0.69809	0.57601	24.01	2	2	Median	0.69809	0.57601	24.01	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214880000	132120000	82766000	214880000	132120000	82766000	0	0	0	0	0	0	0	0	0	13671	1031	12969	82891;82892	111905;111906	111906			2	
ERPTPSLNNNCTTSEDSLVLYNR	0	Unmodified	2679.2559	0.25585671	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			55.717	54.456	3	9.2412E-24	44589	160511_QHF_FH_JSI9i_3	155.76	152.54			1.1457	1.1554	6.8575	4	0	Median	1.4011	1.1734	0.35078	2	0	Median	0.89784	1.0765	8.1611	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136370000	70077000	66288000	73562000	35449000	38114000	62803000	34628000	28175000	0	0	0	0	0	0	13672	878	12970	82893;82894;82895;82896	111907;111908;111909;111910;111911;111912;111913	111910			7	
ERPVQSLK	1	Unmodified	955.54508	0.5450795	3644	Q8NEY8	PPHLN1	Periphilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			9.7365	9.1208	2	0.048485	6844	160511_QHF_FH_JSI10i_3	60.59	43.204			0.85078	0.83711	12.646	2	0	Median	1.1159	0.91541	NaN	1	0	Median	0.64865	0.7655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68973000	31656000	37316000	42656000	16865000	25791000	26317000	14792000	11525000	0	0	0	0	0	0	13673	3644	12971	82897;82898	111914	111914			1	
ERQAALQVAEGFISR	0	Unmodified	1673.8849	0.88491725	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			67.116	65.625	3	0.042962	53765	160511_QHF_FH_JSI9i_3	55.975	52.719			0.77099	0.73461	17.447	2	0	Median	1.0459	0.83107	NaN	1	0	Median	0.56832	0.64936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53604000	30045000	23560000	29950000	14169000	15781000	23654000	15876000	7778300	0	0	0	0	0	0	13674	1490	12972	82899;82900	111915	111915			0	
ERQDNPKLDSMR	1	Acetyl (K);Oxidation (M)	1545.7206	0.72055404	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	1	0	1	2		By MS/MS		By MS/MS	14	0							2				1		1	18.472	10.918	3	0.0072158	7662	160513_QHF_FH_JSI12Kac_4	50.088	44.116			0.90505	0.97486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90505	0.97486	NaN	1	0	Median	15167000	8558300	6608700	0	0	0	0	0	0	0	0	0	15167000	8558300	6608700	13675	3059	12973	82901;82902	111916;111917;111918	111918	2750	2183	3	
ERQEAEEAK	1	Unmodified	1088.5098	0.5098162	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	1.43	0.495	4	3								1	1		5	0.32652	-0.1146	2;3	4.7151E-05	6	160511_QHF_FH_JSI12i_2	83.397	47.886			0.38176	0.43219	92.218	7	2	Median	1.0236	0.9003	NaN	1	0	Median	0.80946	0.94788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.34528	0.34636	104.92	5	2	Median	190170000	124420000	65749000	5328200	2347800	2980400	42109000	25180000	16929000	0	0	0	142730000	96894000	45840000	13676	1270	12974	82903;82904;82905;82906;82907;82908;82909	111919;111920;111921;111922;111923;111924;111925	111919			7	
ERQQQVEAVELEAK	1	Unmodified	1655.8479	0.84786304	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			30.753	29.765	3	0.00018	25826	160511_QHF_FH_JSI9i_2	73.834	63.638			0.43385	0.45263	91.733	2	0	Median	0.26814	0.23661	NaN	1	0	Median	0.70197	0.86586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163990000	111910000	52079000	102370000	81341000	21025000	61624000	30570000	31054000	0	0	0	0	0	0	13677	3328	12975	82910;82911	111926;111927	111926			2	
ERQTNPSAMEVEEDDPVPEIR	0	Unmodified	2440.1176	0.11763189	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		57.359	56.731	3	4.7152E-16	50153	160511_QHF_FH_JSI10i_2	140.2	131.71			1.1858	1.101	4.0504	3	0	Median	1.2328	1.0326	NaN	1	0	Median	0.90254	1.101	NaN	1	0	Median	1.1858	1.113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	191130000	92506000	98624000	62270000	27396000	34874000	85568000	47013000	38555000	43292000	18097000	25195000	0	0	0	13678	1846	12976	82912;82913;82914	111928;111929;111930;111931;111932;111933	111933			6	
ERSDALNSAIDK	1	Unmodified	1317.6525	0.6524577	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	21.507	21.056	2	0.0010645	17623	160511_QHF_FH_JSI11i_3	83.314	55.301			0.99421	0.98273	2.6601	4	0	Median	1.1774	0.99433	NaN	1	0	Median	0.84437	1.0169	NaN	1	0	Median	1.0276	0.95714	NaN	1	0	Median	0.96189	0.97127	NaN	1	0	Median	301960000	152990000	148970000	53767000	29212000	24555000	63151000	34878000	28273000	100780000	53879000	46906000	84259000	35021000	49237000	13679	1421	12977	82915;82916;82917;82918	111934;111935;111936;111937;111938;111939	111934			6	
ERSDTFINLR	0	Unmodified	1249.6415	0.64149908	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			39.908	38.417	3	0.00019085	32057	160511_QHF_FH_JSI10i_3	61.344	45.09			1.3318	1.5558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3318	1.5558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57426000	29246000	28179000	0	0	0	57426000	29246000	28179000	0	0	0	0	0	0	13680	1122	12978	82919	111940	111940			1	
ERSGVSLAALK	1	Unmodified	1129.6455	0.64552182	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	6.09		6	8					1	5	6	6	4	4	35.304	31.808	2;3	9.642E-05	27817	160511_QHF_FH_JSI10i_2	79.82	62.453			1.1342	1.0201	20.843	19	2	Median	1.1799	0.99906	10.144	6	0	Median	0.84765	0.99452	25.817	6	2	Median	1.5558	1.4192	12.479	3	0	Plateau	1.0008	1.0552	22.318	4	0	Median	5767700000	2906500000	2861300000	2516700000	1209100000	1307600000	2012400000	1120100000	892350000	1047700000	482720000	564940000	191030000	94630000	96398000	13681	969;1099;1098	12979	82920;82921;82922;82923;82924;82925;82926;82927;82928;82929;82930;82931;82932;82933;82934;82935;82936;82937;82938;82939	111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960;111961;111962;111963;111964;111965;111966;111967	111959			27	
ERSGVSLAALKK	2	Acetyl (K)	1299.751	0.75104953	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	52.034	42.662	3	0.0095867	23365	160513_QHF_FH_JSI10Kac_6	61.11	40.051			0.47759	0.52454	171.19	3	1	Median	NaN	NaN	NaN	0	0	Median	6.9603	8.1281	NaN	1	1	Median	0.35666	0.3492	NaN	1	0	Median	0.47759	0.52454	NaN	1	0	Median	39456000	17306000	22150000	0	0	0	16352000	1221600	15131000	12421000	9042600	3378500	10683000	7041600	3641000	13682	969;1099;1098	12980	82940;82941;82942	111968;111969;111970	111970	734		3	
ERSLDILK	1	Unmodified	972.5604	0.56039521	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	32.086	32.008	3	0.026334	27043	160511_QHF_FH_JSI12i_3	40.058	8.9845			2.1243	2.1899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1243	2.1899	NaN	1	1	Median	15011000	5236600	9774500	0	0	0	0	0	0	0	0	0	15011000	5236600	9774500	13683	1296	12981	82943	111971	111971			1	
ERSPEVLSGGEDGAVR	0	Unmodified	1656.8067	0.80672651	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			27.535	26.613	3	0.017463	23227	160511_QHF_FH_JSI10i_2	28.472	24.081			0.64369	0.75993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64369	0.75993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17172000	8355900	8815800	0	0	0	17172000	8355900	8815800	0	0	0	0	0	0	13684	3350	12982	82944	111972	111972			1	
ERSTSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAK	1	Unmodified	4222.9302	0.93021486	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	60.324	59.601	4	1.1713E-33	53423	160511_QHF_FH_JSI10i_1	107.21	102.94			1.1051	0.9827	21.339	5	4	Median	1.0901	0.89875	1.59	2	1	Median	0.82331	0.9827	NaN	1	1	Median	1.4606	1.4286	NaN	1	1	Median	1.231	1.2739	NaN	1	1	Median	822250000	565880000	256360000	175690000	115730000	59962000	221900000	168970000	52922000	171970000	116170000	55797000	252700000	165010000	87684000	13685	2307	12983	82945;82946;82947;82948;82949;82950	111973;111974;111975;111976;111977;111978;111979;111980;111981;111982;111983;111984;111985;111986;111987;111988;111989;111990	111982			18	
ERSYETVLSFGK	1	Unmodified	1414.7092	0.70924429	4745	Q9H6H4	REEP4	Receptor expression-enhancing protein 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.181	52.623	3	0.0081848	44017	160511_QHF_FH_JSI10i_3	48.704	34.958			1.8275	2.1133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8275	2.1133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41972000	13722000	28250000	0	0	0	41972000	13722000	28250000	0	0	0	0	0	0	13686	4745	12984	82951	111991	111991			1	
ERTEVEQAYAK	1	Unmodified	1322.6466	0.64664404	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		13.74	13.251	2	0.0012601	10435	160511_QHF_FH_JSI11i_2	81.865	47.333			1.0137	0.71942	26.461	3	1	Plateau	0.73702	0.60631	NaN	1	0	Median	0.58389	0.71942	NaN	1	1	Median	1.0334	1.0191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99108000	47975000	51132000	25978000	12841000	13136000	24808000	13721000	11087000	48322000	21414000	26909000	0	0	0	13687	2690	12985	82952;82953;82954	111992;111993;111994	111993			3	
ERTNEGVIEFR	0	Unmodified	1348.6735	0.67352749	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.29		6	3						2	2	3	5	1	32.42	30.335	2;3	0.00012021	26467	160511_QHF_FH_JSI9i_2	63.473	53.147			0.95027	0.99747	7.1147	11	1	Median	1.1621	1.0158	2.5724	2	0	Median	0.85132	1.0424	6.5584	3	0	Plateau	1.0242	0.97221	7.811	5	0	Median	0.85174	0.87665	NaN	1	1	Median	896830000	430000000	466830000	184100000	83173000	100920000	313880000	160930000	152950000	333970000	149710000	184260000	64873000	36181000	28691000	13688	2378	12986	82955;82956;82957;82958;82959;82960;82961;82962;82963;82964;82965	111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005;112006;112007;112008	112001			14	
ERTSTSSSSVQAR	0	Unmodified	1394.675	0.67498405	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	12.6	4.8			1					4		2	1	1	1	5.4718	-2.1846	2;3	0.00095876	1880	160513_QHF_FH_JSI11Kac_5	67.234	46.175			1.4327	1.4004	5.9488	5	1	Median	1.7265	1.4275	8.3844	2	0	Median	1.1757	1.3359	NaN	1	0	Median	1.4327	1.4004	NaN	1	0	Median	1.406	1.5022	NaN	1	1	Median	43251000	18122000	25129000	33257000	12951000	20306000	1982200	1135200	846930	6118600	2979100	3139500	1893400	1057100	836340	13689	5380	12987	82966;82967;82968;82969;82970	112009;112010;112011;112012	112011			4	
ERVDELTTDLEILK	1	Unmodified	1672.8883	0.88833087	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	79.502	78.659	3	0.00069561	69191	160511_QHF_FH_JSI11i_2	45.873	39.396			0.93813	0.93259	14.796	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.824	1.0083	NaN	1	0	Median	0.93813	0.93259	NaN	1	0	Median	0.69995	0.75732	NaN	1	0	Median	84534000	45222000	39312000	0	0	0	23476000	12156000	11320000	43351000	24380000	18971000	17707000	8685800	9021100	13690	2516	12988	82971;82972;82973	112013;112014	112014			2	
ERVEAGDVIYIEANSGAVK	1	Unmodified	2019.0273	0.027283968	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	58.693	58.518	2;3	6.6476E-08	50353	160511_QHF_FH_JSI12i_3	79.511	73.53			1.047	1.087	19.046	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4272	1.2793	NaN	1	0	Median	0.94067	0.97533	15.329	2	0	Median	185860000	92756000	93105000	0	0	0	0	0	0	47692000	20328000	27363000	138170000	72427000	65742000	13691	5496	12989	82974;82975;82976	112015;112016;112017;112018;112019	112017			5	
ERVEAVNMAEGIIHDTETK	1	Oxidation (M)	2157.0372	0.037196727	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	1			By MS/MS		3	0			3									3		51.458	51.458	3	0.00028138	45299	160511_QHF_FH_JSI11i_3	77.66	64.234			1.0744	0.99726	55.179	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0744	0.99726	55.179	3	2	Median	NaN	NaN	NaN	0	0	Median	195660000	99796000	95864000	0	0	0	0	0	0	195660000	99796000	95864000	0	0	0	13692	1480	12990	82977;82978;82979	112020;112021;112022;112023	112022		1153	4	
ERVEAVNMAEGIIHDTETK	1	Unmodified	2141.0423	0.042282105	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.75		18	7						4	4	10	8	7	69.978	68.125	2;3;4	1.5506E-32	60202	160511_QHF_FH_JSI9i_2	183.54	165.48			0.80694	0.86852	26.398	23	8	Median	1.0827	0.91982	9.9057	4	1	Median	0.5739	0.70542	33.379	8	5	Median	0.76534	0.722	17.191	5	0	Median	0.90559	0.95792	21.303	6	2	Median	8859000000	4666300000	4192700000	1149800000	505210000	644590000	1985600000	978250000	1007400000	4520400000	2522700000	1997700000	1203100000	660120000	543010000	13693	1480	12990	82980;82981;82982;82983;82984;82985;82986;82987;82988;82989;82990;82991;82992;82993;82994;82995;82996;82997;82998;82999;83000;83001;83002;83003;83004;83005;83006;83007;83008	112024;112025;112026;112027;112028;112029;112030;112031;112032;112033;112034;112035;112036;112037;112038;112039;112040;112041;112042;112043;112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063;112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075;112076;112077	112044			53	
ERVEFILEQMR	0	Unmodified	1448.7446	0.74458394	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			71.986	64.52	3	0.001595	35419	160513_QHF_FH_JSI10Kac_6	57.401	46.943			0.86423	1.0454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86423	1.0454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21570000	11937000	9633400	0	0	0	21570000	11937000	9633400	0	0	0	0	0	0	13694	110	12991	83009	112078;112079	112079			2	
ERVLIPVK	1	Unmodified	952.60695	0.60695147	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.62	0.484		3	5							3	3	2		32.592	31.59	2;3	0.0035314	25687	160511_QHF_FH_JSI9i_3	50.805	27.376			1.3767	1.3598	21.909	8	0	Median	1.7224	1.3783	26.444	3	0	Median	1.1763	1.3415	17.744	3	0	Plateau	1.6689	1.603	10.06	2	0	Median	NaN	NaN	NaN	0	0	Median	2562300000	1166900000	1395400000	718630000	285590000	433040000	1015900000	502290000	513640000	827710000	379020000	448680000	0	0	0	13695	2255	12992	83010;83011;83012;83013;83014;83015;83016;83017	112080;112081;112082;112083;112084;112085;112086;112087;112088;112089;112090;112091;112092	112087			13	
ERVMEIVDADEK	1	Unmodified	1432.6868	0.68679429	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		4								2	2			40.357	39.351	2;3	0.0022886	34505	160511_QHF_FH_JSI10i_2	72.006	25.114			1.0951	1.2547	17.107	4	2	Linear	1.2483	1.0798	12.721	2	1	Median	1.1429	1.3986	6.8376	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145100000	74970000	70125000	60210000	31670000	28540000	84885000	43300000	41585000	0	0	0	0	0	0	13696	5658	12993	83018;83019;83020;83021	112093;112094;112095	112094			3	
ERVTPPEGYEVVTVFPK	1	Unmodified	1946.0149	0.014928368	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		69.545	69.545	3	2.7999E-05	61982	160511_QHF_FH_JSI11i_3	90.223	84.795			0.66832	0.6297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66832	0.6297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105890000	63218000	42676000	0	0	0	0	0	0	105890000	63218000	42676000	0	0	0	13697	98	12994	83022	112096	112096			1	
ERWEQGQADYMGADSFDNIK	1	Unmodified	2359.0175	0.017523918	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		61.801	61.801	3	7.1974E-10	54902	160511_QHF_FH_JSI11i_3	114.46	105.97			1.0965	1.0156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.0156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38609000	19960000	18649000	0	0	0	0	0	0	38609000	19960000	18649000	0	0	0	13698	1601	12995	83023	112097;112098;112099	112099			3	
ERWGSNELPAEEGK	1	Unmodified	1600.7481	0.74814899	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1			By MS/MS		3	0			3									3		32.115	32.115	3	0.00013134	27854	160511_QHF_FH_JSI11i_3	65.472	60.67			1.0109	0.92244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0109	0.92244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53083000	26323000	26760000	0	0	0	0	0	0	53083000	26323000	26760000	0	0	0	13699	1103	12996	83024;83025;83026	112100;112101;112102;112103	112100			4	
ERYNFPNPNPFVEDDMDK	1	Unmodified	2225.9688	0.96878281	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	71.014	70.335	3	4.4716E-07	62688	160511_QHF_FH_JSI11i_3	108.17	98.987			1.4849	1.7048	89.994	5	2	Median	2.2599	1.9319	NaN	1	1	Median	1.5565	1.835	10.407	2	1	Median	0.24583	0.23462	NaN	1	0	Median	1.0995	1.1505	NaN	1	0	Median	625010000	276100000	348910000	88122000	29200000	58922000	300640000	76917000	223720000	187340000	148480000	38856000	48913000	21499000	27414000	13700	282	12997	83027;83028;83029;83030;83031	112104;112105;112106;112107;112108;112109;112110;112111;112112;112113	112104			9	
ERYSDFVVHEIGK	1	Unmodified	1577.7838	0.78380622	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.157	51.157	3	0.012082	45199	160511_QHF_FH_JSI11i_3	40.751	28.961			5.0386	4.6695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0386	4.6695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115100000	30761000	84339000	0	0	0	0	0	0	115100000	30761000	84339000	0	0	0	13701	4202	12998	83032	112114	112114			1	
ESAAHDYTLR	0	Unmodified	1161.5415	0.54145068	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.019	14.168	3	0.024837	11281	160511_QHF_FH_JSI12i_2	28.283	17.911			0.86838	0.99289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86838	0.99289	NaN	1	1	Median	35365000	14992000	20373000	0	0	0	0	0	0	0	0	0	35365000	14992000	20373000	13702	2239	12999	83033	112115	112115			1	
ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR	0	Unmodified	3245.7044	0.70444027	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	69.378	68.733	3	2.0277E-11	61471	160511_QHF_FH_JSI11i_3	68.934	62.43			0.80415	0.98988	17.208	6	1	Linear	0.99477	0.86814	NaN	1	0	Median	0.92194	1.1058	26.076	2	0	Median	1.0151	0.98869	10.582	2	0	Median	1.1403	1.2126	NaN	1	1	Median	219660000	117260000	102400000	33587000	15879000	17708000	116180000	64456000	51726000	56941000	32862000	24078000	12951000	4061800	8889000	13703	3893	13000	83034;83035;83036;83037;83038;83039	112116;112117;112118;112119;112120;112121;112122;112123;112124;112125;112126;112127;112128;112129	112117			14	
ESADPLGAWLQDAR	0	Unmodified	1527.7318	0.73177065	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		84.51	84.02	2	2.4632E-13	76601	160511_QHF_FH_JSI11i_1	127.56	93.673			0.94075	0.92256	19.464	2	2	Median	0.99312	0.80394	NaN	1	1	Median	0.89114	1.0587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124770000	71949000	52824000	42076000	22843000	19234000	82697000	49106000	33590000	0	0	0	0	0	0	13704	2636	13001	83040;83041;83042	112130;112131;112132	112130			3	
ESAEALATK	1	Unmodified	918.46583	0.46582612	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		21.065	13.634	2	0.055844	9135	160513_QHF_FH_JSI11Kac_3	36.381	19.842			1.2072	1.2762	0.77184	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0803	1.2693	NaN	1	0	Median	1.3491	1.2832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6504000	2901000	3603100	0	0	0	1857400	1118500	738930	4646600	1782500	2864100	0	0	0	13705	8	13002	83043;83044	112133	112133			1	
ESAEFQTQLEK	1	Unmodified	1308.6198	0.61976058	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	35.551	34.95	2	8.4005E-14	31382	160511_QHF_FH_JSI11i_1	153.97	118.53			1.0955	1.2857	34.821	5	2	Median	0.86641	0.70054	NaN	1	0	Median	1.0955	1.2857	NaN	1	0	Median	1.5035	1.4654	NaN	1	0	Median	0.93363	0.97311	39.7	2	2	Median	1133900000	509940000	623960000	231530000	110170000	121370000	252290000	122430000	129860000	259450000	111070000	148380000	390620000	166270000	224350000	13706	1016	13003	83045;83046;83047;83048;83049	112134;112135;112136;112137;112138;112139;112140;112141;112142	112136			9	
ESAFEFLSSA	0	Unmodified	1086.487	0.4869555	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.83	4	4				1	1			2	3	2	3	89.037	87.421	2	4.847E-10	79140	160511_QHF_FH_JSI9i_1	139.28	135.71			1.0079	1.0192	3.2929	9	0	Median	1.2448	1.0181	1.3427	2	0	Median	0.89306	1.0404	3.0057	3	0	Median	1.0303	1.0007	1.6934	2	0	Median	0.9411	1.0293	6.1788	2	0	Median	1783900000	907030000	876830000	424400000	203290000	221110000	404060000	220690000	183370000	595390000	294020000	301370000	360010000	189030000	170980000	13707	1503	13004	83050;83051;83052;83053;83054;83055;83056;83057;83058;83059	112143;112144;112145;112146;112147;112148;112149;112150;112151;112152;112153;112154;112155;112156;112157;112158;112159;112160;112161;112162;112163	112159			21	
ESAFQSEPR	0	Unmodified	1049.4778	0.47778779	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				15.534	14.515	2	0.013643	11757	160511_QHF_FH_JSI9i_1	67.507	55.314			1.3736	1.1106	NaN	1	1	Median	1.3736	1.1106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49943000	18914000	31029000	49943000	18914000	31029000	0	0	0	0	0	0	0	0	0	13708	2947	13005	83060	112164	112164			1	
ESAHLAISWLR	0	Unmodified	1281.683	0.68296996	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		72.138	62.719	3	0.046916	33987	160513_QHF_FH_JSI11Kac_6	35.594	26.894			1.1641	1.1004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1641	1.1004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9993800	3850500	6143200	0	0	0	0	0	0	9993800	3850500	6143200	0	0	0	13709	3355	13006	83061	112165	112165			0	
ESAINVAEGKK	2	Unmodified	1144.6088	0.60880197	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.559	1	10	5							2	3	5	6	17.172	16.638	2;3	2.2201E-06	13344	160511_QHF_FH_JSI11i_2	113.93	92.626			0.87948	0.8819	43.573	14	9	Median	0.97443	0.8471	23.749	2	1	Median	0.63209	0.78812	39.609	3	2	Plateau	0.9969	0.90688	43.865	3	3	Plateau	0.95314	0.95912	53.111	6	3	Median	730710000	393370000	337340000	91248000	49713000	41535000	117880000	71405000	46479000	130910000	65288000	65625000	390670000	206970000	183700000	13710	5357	13007	83062;83063;83064;83065;83066;83067;83068;83069;83070;83071;83072;83073;83074;83075;83076;83077	112166;112167;112168;112169;112170;112171;112172;112173;112174;112175;112176;112177;112178;112179;112180	112175			14	
ESAIVSRPLNPFTAK	1	Unmodified	1628.8886	0.88860564	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		57.556	56.322	2;3	0.00011913	46181	160511_QHF_FH_JSI9i_3	81.632	81.632			0.8148	0.80388	16.795	5	2	Median	1.0466	0.84843	7.6278	2	0	Median	0.67102	0.75195	27.298	2	2	Median	0.73944	0.68768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	523210000	280010000	243200000	156450000	78809000	77644000	266340000	147390000	118950000	100420000	53816000	46604000	0	0	0	13711	5554	13008	83078;83079;83080;83081;83082	112181;112182;112183;112184;112185	112184			5	
ESALFSTELSVLHNFFSPSPK	1	Unmodified	2336.1689	0.16886283	3804	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.02	102.03	3	1.6096E-22	88778	160511_QHF_FH_JSI12i_3	149.84	139.49			0.84698	0.87085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84698	0.87085	NaN	1	1	Median	281320000	188000000	93320000	0	0	0	0	0	0	0	0	0	281320000	188000000	93320000	13712	3804	13009	83083	112186	112186			1	
ESALILLQTVPK	1	Unmodified	1310.781	0.78095267	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.6	3	4					3	4	1	3	4	4	4	83.062	77.322	2	1.3493E-15	38745	160513_QHF_FH_JSI11Kac_5	138.71	95.201			0.98032	0.97988	21.331	15	1	Median	1.101	0.95608	3.8282	3	0	Plateau	0.83153	0.95399	13.28	4	0	Median	1.1544	1.1706	27.862	4	0	Median	0.96823	1.0157	23.583	4	1	Median	478540000	235380000	243170000	100740000	48538000	52202000	126180000	61611000	64569000	151400000	74583000	76817000	100220000	50643000	49580000	13713	5739	13010	83084;83085;83086;83087;83088;83089;83090;83091;83092;83093;83094;83095;83096;83097;83098	112187;112188;112189;112190;112191;112192;112193;112194;112195;112196;112197;112198;112199;112200;112201;112202;112203;112204;112205;112206	112202			19	
ESALPCQASPLHPALAYSLPQSPIVR	0	Unmodified	2801.4534	0.4534343	3796	Q8WWB7	GLMP	Glycosylated lysosomal membrane protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		86.412	85.829	3	0.00065653	75545	160511_QHF_FH_JSI11i_2	40.142	32.866			0.63802	0.7174	25.803	2	1	Median	NaN	NaN	NaN	0	0	Median	0.68904	0.861	NaN	1	1	Median	0.59079	0.59776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30020000	16125000	13895000	0	0	0	11021000	7709800	3311600	18998000	8415200	10583000	0	0	0	13714	3796	13011	83099;83100	112207;112208;112209	112208			3	
ESATADAGYAILEK	1	Unmodified	1437.6987	0.69873919	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.502	52.838	2	1.4659E-07	48063	160511_QHF_FH_JSI12i_1	140.57	105.06			0.84477	0.86474	3.1849	4	1	Median	1.0668	0.86185	NaN	1	0	Median	0.73779	0.89714	NaN	1	1	Median	0.89351	0.86764	NaN	1	0	Median	0.79869	0.83009	NaN	1	0	Median	303950000	162780000	141170000	59277000	28130000	31147000	66373000	38341000	28032000	98757000	52987000	45769000	79544000	43319000	36225000	13715	2140	13012	83101;83102;83103;83104	112210;112211;112212;112213	112211			4	
ESAVHSQYK	1	Unmodified	1047.4985	0.49852324	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				5.879	5.4637	2	0.0024991	3454	160511_QHF_FH_JSI9i_2	64.711	38.817			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13716	4288	13013	83105	112214	112214			1	
ESAWSPPPIEIR	0	Unmodified	1380.7038	0.70376498	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.825	69.225	2	2.304E-05	60565	160511_QHF_FH_JSI11i_2	88.681	75.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13717	3819	13014	83106	112215	112215			1	
ESAWTKPDGVK	2	Acetyl (K)	1258.6194	0.61936665	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		50.462	39.797	2	0.0047723	23416	160513_QHF_FH_JSI11Kac_4	72.006	58.652			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1530600	1530600	0	0	0	0	0	0	0	1530600	1530600	0	0	0	0	13718	203	13015	83107	112216	112216	110		1	
ESAWTKPDGVK	2	Unmodified	1216.6088	0.60880197	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	22.667	22.225	2;3	0.0007868	18158	160511_QHF_FH_JSI12i_3	60.49	46.283			1.1822	1.1731	90.63	3	1	Plateau	1.3787	1.1676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.24556	0.24355	NaN	1	1	Median	1.1822	1.1731	NaN	1	0	Median	247480000	143810000	103670000	61015000	32936000	28079000	0	0	0	56291000	34151000	22140000	130180000	76728000	53449000	13719	203	13015	83108;83109;83110;83111	112217;112218;112219	112218			3	
ESCLEAYTGIVQGLK	1	Unmodified	1666.8236	0.82362212	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									2	1	2	82.049	81.753	2;3	7.8482E-11	74488	160511_QHF_FH_JSI11i_1	154.66	136.39			0.57342	0.6041	31.299	4	1	Median	NaN	NaN	NaN	0	0	Median	0.71501	0.8125	10.568	2	0	Median	0.49609	0.47124	NaN	1	0	Median	0.49076	0.484	NaN	1	1	Median	84149000	53225000	30925000	0	0	0	49035000	32315000	16720000	22984000	13457000	9526800	12131000	7453100	4678100	13720	2585	13016	83112;83113;83114;83115;83116	112220;112221;112222;112223;112224;112225	112220			6	
ESCSKHASGTSFHLPQPSFR	1	Acetyl (K)	2301.0597	0.059663504	5396	Q9ULD4	BRPF3	Bromodomain and PHD finger-containing protein 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	62.302	53.084	3;4	2.4803E-06	27824	160513_QHF_FH_JSI12Kac_6	77.221	69.229			1.183	1.344	23.117	6	0	Median	1.8166	1.5514	NaN	1	0	Median	1.183	1.3882	3.9844	2	0	Median	0.85555	0.81106	NaN	1	0	Median	1.1687	1.2477	9.9253	2	0	Median	179600000	81717000	97881000	19738000	7453300	12285000	79346000	34675000	44671000	17612000	10699000	6913800	62901000	28890000	34011000	13721	5396	13017	83117;83118;83119;83120;83121;83122	112226;112227;112228;112229;112230;112231	112229	3389		6	
ESCSSSFTSIMGYLYHVR	0	Unmodified	2122.9452	0.9452106	4173	Q96ME7	ZNF512	Zinc finger protein 512	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	88.077	78.635	3	0.037966	42134	160513_QHF_FH_JSI12Kac_6	36.943	33.282			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13722	4173	13018	83123	112232	112232			1	
ESDAMFAAER	0	Unmodified	1125.4761	0.47607323	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	29.014	28.647	2	0.001886	25416	160511_QHF_FH_JSI11i_1	63.184	51.117			0.92413	1.0667	14.734	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91411	1.0667	NaN	1	0	Median	1.0688	1.0373	NaN	1	0	Median	1.3107	1.3561	NaN	1	0	Median	242360000	141200000	101160000	0	0	0	87515000	51862000	35653000	81933000	50286000	31647000	72911000	39047000	33864000	13723	225	13019	83124;83125;83126	112233;112234	112233			2	
ESDGFREEK	1	Unmodified	1095.4833	0.4832671	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							1	1	3	3	7.9728	7.6791	2;3	0.022729	5284	160511_QHF_FH_JSI11i_2	60.828	35.906			0.92435	0.984	18.401	8	0	Median	1.1589	0.98632	NaN	1	0	Median	0.8758	1.0918	NaN	1	0	Median	0.99014	0.98169	17.038	3	0	Plateau	0.93649	1.0268	25.634	3	0	Median	693140000	363550000	329590000	83512000	29556000	53956000	103370000	65778000	37597000	367890000	195100000	172790000	138360000	73113000	65248000	13724	5124	13020	83127;83128;83129;83130;83131;83132;83133;83134	112235;112236	112235			2	
ESDITKER	1	Acetyl (K)	1018.4931	0.49310351	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		17.308	9.9005	2	0.013729	7392	160513_QHF_FH_JSI11Kac_3	69.423	35.627			0.67632	0.72596	96.574	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2247	1.4371	NaN	1	0	Median	0.37349	0.36672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22514000	14738000	7775600	0	0	0	5140400	2336600	2803800	17374000	12402000	4971800	0	0	0	13725	1132	13021	83135;83136	112237	112237	983		1	
ESDLNGAQIK	1	Unmodified	1073.5353	0.53530267	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	2	1	1	22.979	19.476	2	1.2584E-07	16754	160511_QHF_FH_JSI10i_1	120.99	87.631			0.91961	0.98	12.393	5	0	Median	1.3725	1.1466	NaN	1	0	Median	0.77125	0.89549	11.703	2	0	Median	1.0829	1.0695	NaN	1	0	Median	0.91961	0.98	NaN	1	0	Median	1012100000	529540000	482530000	334160000	175260000	158900000	326260000	190640000	135620000	8410700	4208200	4202500	343240000	159430000	183820000	13726	1180	13022	83137;83138;83139;83140;83141	112238;112239;112240;112241;112242;112243;112244	112240			7	
ESDLPSAILQTSGVSEFTK	1	Unmodified	2008.0001	6.61646E-05	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	92.015	91.617	2;3	1.5089E-24	83324	160511_QHF_FH_JSI11i_1	178.67	140.65			1.1093	1.0396	12.993	6	1	Median	1.3033	1.0316	NaN	1	1	Median	0.72869	0.84724	NaN	1	0	Median	1.1093	1.0667	6.6394	2	0	Median	1.1079	1.1489	13.042	2	0	Median	252570000	112260000	140320000	25650000	10653000	14996000	41303000	22339000	18964000	116220000	48276000	67941000	69403000	30988000	38415000	13727	4271	13023	83142;83143;83144;83145;83146;83147	112245;112246;112247;112248;112249;112250;112251;112252;112253;112254;112255;112256;112257	112246			13	
ESDLSHVQNK	1	Unmodified	1155.552	0.55201537	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	1	2	2	9.2029	8.7676	2;3	8.3476E-05	6386	160511_QHF_FH_JSI12i_2	86.67	46.603			1.128	0.98141	19.472	7	4	Median	1.3947	1.1471	24.621	2	2	Median	0.84639	0.98141	NaN	1	0	Median	1.229	1.2385	6.9922	2	1	Median	0.80256	0.86091	9.3068	2	1	Median	677710000	346270000	331440000	195760000	97136000	98623000	151020000	82968000	68049000	165520000	72917000	92607000	165410000	93249000	72165000	13728	326	13024	83148;83149;83150;83151;83152;83153;83154	112258;112259;112260;112261;112262;112263	112259			6	
ESDLWVDFEVR	0	Unmodified	1393.6514	0.65139506	5840				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.202	47.521	2	0.0087631	42248	160511_QHF_FH_JSI9i_1	60.59	48.543	+		1.1285	1.0398	13.7	4	0	Median	1.1277	0.93822	NaN	1	0	Median	0.8177	0.94734	NaN	1	0	Median	1.2753	1.235	NaN	1	0	Median	1.1293	1.1413	NaN	1	0	Median	596070000	278990000	317080000	116240000	49692000	66544000	151610000	86530000	65077000	147200000	62825000	84373000	181030000	79942000	101090000	13729	5840	13025	83155;83156;83157;83158	112264;112265;112266;112267	112267			4	
ESDPSDPNK	1	Unmodified	987.41452	0.41451884	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.1772	4.9381	2	0.0040831	2880	160511_QHF_FH_JSI10i_1	68.383	52.943			1.7843	2.0783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7843	2.0783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48233000	16116000	32117000	0	0	0	48233000	16116000	32117000	0	0	0	0	0	0	13730	2089	13026	83159	112268	112268			1	
ESDQTLAALLSPK	1	Unmodified	1371.7246	0.72456001	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.34	74.015	2	0.0044555	67292	160511_QHF_FH_JSI11i_1	62.732	50.496			0.25847	0.24665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25847	0.24665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46789000	37925000	8864600	0	0	0	0	0	0	46789000	37925000	8864600	0	0	0	13731	1141	13027	83160	112269	112269			1	
ESDTGLAPPALWDLAADK	1	Unmodified	1868.9156	0.91560825	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	97.828	97.67	2;3	3.1158E-18	88372	160511_QHF_FH_JSI10i_1	204.35	189.47			1.0143	1.0562	8.079	9	7	Median	1.2797	1.0528	0.46028	2	1	Median	0.99279	1.1325	9.1083	3	2	Median	1.074	1.0345	9.9205	2	2	Median	1.0542	1.0622	14.571	2	2	Median	740060000	333690000	406380000	140730000	58986000	81742000	317930000	152240000	165690000	72316000	33167000	39148000	209090000	89293000	119800000	13732	1449	13028	83161;83162;83163;83164;83165;83166;83167;83168;83169;83170	112270;112271;112272;112273;112274;112275;112276;112277;112278;112279;112280;112281;112282;112283;112284;112285	112277			16	
ESDVGFIPTSGLSGENLITR	0	Unmodified	2091.0484	0.048413341	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	87.861	87.411	2	8.8456E-25	79648	160511_QHF_FH_JSI11i_1	175.15	152.57			1.092	1.1105	9.6524	5	2	Median	1.6716	1.3583	NaN	1	0	Median	1.0282	1.1696	NaN	1	0	Median	1.1524	1.0995	NaN	1	0	Median	1.0422	1.0866	3.0781	2	2	Median	131160000	58753000	72403000	21031000	6936600	14094000	24279000	10080000	14199000	38561000	18668000	19893000	47286000	23069000	24217000	13733	5610	13029	83171;83172;83173;83174;83175	112286;112287;112288;112289;112290;112291;112292;112293;112294;112295;112296	112288			11	
ESDVPLK	1	Unmodified	786.41233	0.41233399	3940	Q969H8	MYDGF	Myeloid-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.335	16.854	2	0.0089406	14055	160511_QHF_FH_JSI9i_1	81.297	56.298			1.0945	1.0855	10.955	4	0	Median	1.2518	1.03	NaN	1	0	Median	1.0163	1.1825	NaN	1	0	Median	1.1787	1.144	NaN	1	0	Median	0.86617	0.92845	NaN	1	0	Median	5754500000	3326500000	2428100000	1505700000	825360000	680380000	1414000000	906470000	507480000	1206100000	602320000	603760000	1628800000	992310000	636450000	13734	3940	13030	83176;83177;83178;83179	112297;112298;112299;112300;112301;112302;112303;112304;112305;112306	112305			10	
ESDYFTPQGEFRVDK	1	Unmodified	1816.8268	0.82679325	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.925	55.837	2;3	1.1565E-06	48436	160511_QHF_FH_JSI11i_2	94.616	75.871			0.88469	1.0764	4.0056	3	0	Plateau	1.2761	1.1154	NaN	1	0	Median	0.82543	1.04	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9842	1.1141	NaN	1	0	Median	245620000	112670000	132950000	57552000	20276000	37276000	96037000	53778000	42259000	0	0	0	92035000	38618000	53416000	13735	3708	13031	83180;83181;83182;83183	112307;112308;112309;112310	112310			4	
ESEALPEK	1	Unmodified	901.43928	0.43927702	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	15.126	13.285	2	0.00096726	10871	160511_QHF_FH_JSI9i_1	95.815	66.477			0.80037	0.76568	10.248	5	0	Median	0.91033	0.74116	NaN	1	0	Median	0.6268	0.74582	NaN	1	0	Median	0.87094	0.85094	14.93	2	0	Median	0.80037	0.83035	NaN	1	0	Median	1838700000	895740000	942980000	385940000	176130000	209810000	424210000	232690000	191530000	499860000	233960000	265900000	528700000	252960000	275750000	13736	3085	13032	83184;83185;83186;83187;83188	112311;112312;112313;112314;112315;112316;112317;112318;112319	112319			9	
ESEAQISWFAPEDHGYGTEVSTK	1	Unmodified	2567.1452	0.14522685	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	70.102	69.104	3	4.7797E-08	60878	160511_QHF_FH_JSI9i_2	77.221	64.164			0.97043	1.0914	16.19	4	4	Median	NaN	NaN	NaN	0	0	Median	0.99787	1.207	NaN	1	1	Median	0.94374	0.98679	NaN	1	1	Median	1.0437	1.1312	23.888	2	2	Median	78476000	40147000	38329000	0	0	0	18500000	10413000	8086100	22332000	12051000	10281000	37645000	17683000	19962000	13737	4681	13033	83189;83190;83191;83192;83193	112320;112321;112322;112323;112324;112325;112326	112323			7	
ESEAVEWQQK	1	Unmodified	1232.5673	0.56733108	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	2	1	3	29.059	25.043	2	1.2028E-55	22211	160511_QHF_FH_JSI10i_1	229.44	209.92			1.0933	1.1286	16.282	7	1	Median	1.1284	0.93021	NaN	1	0	Median	0.98195	1.1688	4.9546	2	1	Median	1.0933	1.0559	NaN	1	0	Median	1.2005	1.3052	22.334	3	0	Median	3292600000	1532900000	1759600000	764540000	350600000	413940000	726650000	365160000	361490000	908270000	433620000	474650000	893090000	383530000	509560000	13738	1270	13034	83194;83195;83196;83197;83198;83199;83200	112327;112328;112329;112330;112331;112332;112333;112334;112335;112336;112337;112338;112339;112340;112341;112342;112343;112344;112345	112337			19	
ESEDAELLWR	0	Unmodified	1246.583	0.58298115	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			24.701	24.408	2	0.015271	21423	160511_QHF_FH_JSI10i_1	51.63	22.548			0.32071	0.37904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32071	0.37904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73633000	51199000	22434000	0	0	0	73633000	51199000	22434000	0	0	0	0	0	0	13739	4024	13035	83201	112346	112346			1	
ESEDFIVEQYK	1	Unmodified	1385.6351	0.6350763	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	57.145	52.724	2	3.0608E-23	47769	160511_QHF_FH_JSI12i_1	176.33	140.88			0.9183	0.96312	23.642	7	1	Median	1.2157	0.99992	NaN	1	0	Median	0.71214	0.83355	20.434	2	0	Median	0.91705	0.89601	7.9013	2	0	Median	1.148	1.2427	32.512	2	1	Median	1476000000	835380000	640650000	372250000	171400000	200850000	367840000	229240000	138600000	345220000	189560000	155650000	390730000	245180000	145550000	13740	2545	13036	83202;83203;83204;83205;83206;83207;83208	112347;112348;112349;112350;112351;112352;112353;112354;112355;112356;112357;112358;112359;112360;112361;112362;112363	112353			17	
ESEDKPEIEDVGSDEEEEK	2	Unmodified	2191.9128	0.91282688	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	32.704	32.102	2;3	3.2144E-17	28547	160511_QHF_FH_JSI10i_1	162.87	150.24			0.91935	0.90364	13.366	8	0	Median	0.9236	0.73837	4.1028	2	0	Median	0.69928	0.83419	10.048	2	0	Median	0.96794	0.94735	5.4191	2	0	Median	0.93629	0.99166	6.5291	2	0	Median	1293200000	753060000	540170000	294230000	185780000	108450000	315160000	197040000	118110000	384580000	215210000	169370000	299270000	155030000	144240000	13741	880	13037	83209;83210;83211;83212;83213;83214;83215;83216	112364;112365;112366;112367;112368;112369;112370;112371;112372;112373;112374;112375;112376;112377;112378;112379;112380;112381;112382;112383;112384	112376			21	
ESEDKPEIEDVGSDEEEEKK	3	Unmodified	2320.0078	0.007789897	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	28.085	27.717	3;4	1.241E-10	24516	160511_QHF_FH_JSI10i_1	128.55	113.94			1.028	1.0767	16.983	5	2	Median	NaN	NaN	NaN	0	0	Median	0.97399	1.1597	NaN	1	0	Median	0.97589	0.95184	8.1218	2	1	Median	1.1743	1.2346	19.359	2	1	Median	690540000	351140000	339400000	0	0	0	60726000	32264000	28462000	325320000	167170000	158150000	304500000	151710000	152790000	13742	880	13038	83217;83218;83219;83220;83221	112385;112386;112387;112388;112389;112390;112391;112392;112393;112394	112393			10	
ESEDSTDFNDK	1	Unmodified	1285.4946	0.49461965	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	15.071	12.442	2	2.1079E-05	10856	160511_QHF_FH_JSI12i_1	102.52	89.996			1.1016	1.0015	8.6914	6	0	Median	1.1236	0.92526	NaN	1	0	Median	0.84819	1.0011	NaN	1	0	Median	1.1219	1.0683	9.0728	2	0	Median	1.0257	1.0721	10.679	2	0	Median	511010000	246860000	264140000	139900000	56909000	82993000	109660000	57491000	52171000	125860000	49737000	76120000	135590000	82727000	52861000	13743	5566	13039	83222;83223;83224;83225;83226;83227	112395;112396;112397;112398;112399;112400;112401	112398			7	
ESEEALQK	1	Unmodified	932.44509	0.44509068	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	9.5244	9.1589	2	0.00014518	6679	160511_QHF_FH_JSI9i_1	125.25	80.56			0.83079	0.79896	8.2835	4	0	Median	0.98396	0.81157	NaN	1	0	Median	0.67935	0.78655	NaN	1	0	Median	0.93565	0.91687	NaN	1	0	Median	0.73768	0.75706	NaN	1	0	Median	805120000	437920000	367200000	188860000	103320000	85546000	206040000	108850000	97184000	222570000	124870000	97697000	187650000	100880000	86776000	13744	5213	13040	83228;83229;83230;83231;83232	112402;112403;112404;112405;112406;112407;112408	112408			7	
ESEEEVGPTK	1	Unmodified	1103.4982	0.49824846	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.623	10.239	2	5.2093E-14	8094	160511_QHF_FH_JSI12i_1	158.76	137.46			0.68164	0.6469	8.5611	4	0	Median	0.80193	0.6618	NaN	1	0	Median	0.51866	0.60592	NaN	1	0	Median	0.65018	0.63234	NaN	1	0	Median	0.71462	0.7393	NaN	1	0	Median	352740000	208510000	144230000	89329000	52137000	37193000	91569000	58503000	33066000	82490000	44799000	37691000	89352000	53071000	36281000	13745	366	13041	83233;83234;83235;83236	112409;112410;112411;112412;112413	112410			5	
ESEEGNPVR	0	Unmodified	1015.4571	0.45705235	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		7.6533	7.5362	2	0.0081227	5403	160511_QHF_FH_JSI10i_1	53.404	29.547			0.94832	0.92138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94832	0.92138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34822000	21008000	13814000	0	0	0	0	0	0	34822000	21008000	13814000	0	0	0	13746	366	13042	83237;83238;83239	112414;112415;112416	112416			3	
ESEFDDEPK	1	Unmodified	1094.4404	0.44039923	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	21.46	17.558	2	1.7818E-11	15218	160511_QHF_FH_JSI12i_1	162.97	112.27			1.1427	1.1278	14.249	8	0	Median	1.2871	1.0729	NaN	1	0	Median	1.1814	1.3828	3.17	2	0	Median	1.1686	1.1414	7.7437	2	0	Median	1.1172	1.1771	13.22	3	0	Plateau	798750000	378960000	419790000	204750000	90645000	114110000	168470000	78898000	89568000	214240000	107600000	106640000	211290000	101820000	109480000	13747	5542	13043	83240;83241;83242;83243;83244;83245;83246;83247	112417;112418;112419;112420;112421;112422;112423;112424;112425;112426;112427;112428;112429	112420			13	
ESEIIDFFLGASLK	1	Unmodified	1567.8134	0.81337501	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		8	2						8	5	5	4	4	100.09	96.09	2;3	5.3389E-57	50562	160513_QHF_FH_JSI9Kac_6	241.92	195.92			0.86704	0.84091	20.576	17	4	Median	0.9631	0.81698	20.814	5	2	Median	0.68067	0.83433	13.417	5	1	Median	0.83135	0.84091	28.962	3	1	Plateau	0.89572	0.9754	24.749	4	0	Median	4035800000	2146100000	1889700000	1108200000	521990000	586240000	711520000	418320000	293190000	1220500000	660630000	559870000	995560000	545180000	450380000	13748	1084	13044	83248;83249;83250;83251;83252;83253;83254;83255;83256;83257;83258;83259;83260;83261;83262;83263;83264;83265	112430;112431;112432;112433;112434;112435;112436;112437;112438;112439;112440;112441;112442;112443;112444;112445;112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456	112450			27	
ESEIIDFFLGASLKDEVLK	2	Unmodified	2152.1304	0.13035206	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	97.017	88.928	3	4.562E-19	48000	160513_QHF_FH_JSI12Kac_6	146.1	131.79			0.65166	0.72415	30.187	3	1	Plateau	1.1944	1.004	NaN	1	1	Median	0.4839	0.57213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87757	0.91657	NaN	1	0	Median	311610000	153650000	157960000	59207000	20731000	38475000	129230000	80770000	48463000	0	0	0	123170000	52153000	71017000	13749	1084	13045	83266;83267;83268	112457;112458;112459	112458			3	
ESEIPTSEIQTPSYGFSLLK	1	Unmodified	2225.1103	0.1103449	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		94.122	93.788	2	5.9004E-05	85334	160511_QHF_FH_JSI11i_1	72.265	50.392			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13750	3405	13046	83269	112460	112460			1	
ESEITDEDIDGILER	0	Unmodified	1732.8003	0.80030372	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.644	73.141	2	1.3995E-14	66539	160511_QHF_FH_JSI11i_1	158.01	125.07			1.1437	1.1359	7.3346	4	0	Median	1.4692	1.195	NaN	1	0	Median	0.88305	1.0201	NaN	1	0	Median	1.2509	1.1793	NaN	1	0	Median	1.0457	1.094	NaN	1	0	Median	228190000	111090000	117100000	21120000	10305000	10815000	84570000	44962000	39608000	71758000	30744000	41014000	50742000	25076000	25667000	13751	403	13047	83270;83271;83272;83273	112461;112462;112463;112464;112465	112461			5	
ESEKSLENETLNK	2	Acetyl (K)	1561.7471	0.74714594	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	45.468	36.578	2	0.0088962	20191	160513_QHF_FH_JSI12Kac_3	64.439	38.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1327000	1327000	0	0	0	0	0	0	0	0	0	0	1327000	1327000	0	13752	1237	13048	83274	112466	112466	1134		1	
ESELPADLEMVEK	1	Unmodified	1488.7018	0.70177565	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		67.308	66.884	2	0.04549	60837	160511_QHF_FH_JSI11i_1	45.257	29.628			0.82414	0.80264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82414	0.80264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43260000	26581000	16679000	0	0	0	0	0	0	43260000	26581000	16679000	0	0	0	13753	3430	13049	83275	112467	112467			1	
ESENLASGDQPR	0	Unmodified	1301.5848	0.58477206	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.571	13.134	2	1.9212E-07	10687	160511_QHF_FH_JSI10i_1	133.12	105.9			1.1868	1.1662	11.021	4	0	Median	1.463	1.1936	NaN	1	0	Median	1.222	1.4335	NaN	1	0	Median	1.1526	1.1345	NaN	1	0	Median	1.1151	1.1395	NaN	1	0	Median	405720000	194510000	211210000	101610000	43079000	58535000	114190000	52100000	62094000	103690000	52478000	51208000	86231000	46856000	39375000	13754	5108	13050	83276;83277;83278;83279	112468;112469;112470;112471;112472	112471			5	
ESEPAPASVTALTDAR	0	Unmodified	1613.7897	0.78967946	2156	Q00613	HSF1	Heat shock factor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.707	51.033	2	3.994E-16	46383	160511_QHF_FH_JSI12i_1	168.59	136.18			1.0656	1.0919	4.2554	4	0	Median	1.2939	1.0797	NaN	1	0	Median	0.99663	1.1756	NaN	1	0	Median	1.0968	1.0695	NaN	1	0	Median	1.0354	1.1043	NaN	1	0	Median	398250000	188530000	209720000	96890000	41154000	55737000	93721000	54962000	38759000	99639000	43082000	56557000	107990000	49331000	58664000	13755	2156	13051	83280;83281;83282;83283	112473;112474;112475;112476;112477	112474			5	
ESEPQAAAEPAEAK	1	Unmodified	1426.6576	0.65760265	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	4.9	6	4	4	8	8	1				5	8	11	7	20.396	15.664	2;3	3.2718E-66	14204	160511_QHF_FH_JSI12i_1	237.67	214.25			0.94334	0.98319	27.563	28	5	Median	1.1965	1.178	14.602	4	2	Linear	0.85903	1.0081	12.56	8	0	Median	0.99778	0.97201	41.084	9	3	Median	0.93157	0.97763	27.243	7	0	Median	14525000000	7302200000	7222900000	3526700000	1694200000	1832500000	3771600000	1974700000	1796900000	3718500000	1769300000	1949200000	3508200000	1863900000	1644300000	13756	2101	13052	83284;83285;83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298;83299;83300;83301;83302;83303;83304;83305;83306;83307;83308;83309;83310;83311;83312;83313;83314	112478;112479;112480;112481;112482;112483;112484;112485;112486;112487;112488;112489;112490;112491;112492;112493;112494;112495;112496;112497;112498;112499;112500;112501;112502;112503;112504;112505;112506;112507;112508;112509;112510;112511;112512;112513;112514;112515;112516;112517;112518;112519;112520;112521;112522;112523;112524;112525;112526;112527;112528;112529;112530;112531;112532;112533;112534;112535;112536;112537;112538;112539;112540	112498			63	
ESESAPGDFSLSVK	1	Unmodified	1451.678	0.67800374	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	53.509	52.756	2	3.3144E-05	47964	160511_QHF_FH_JSI12i_1	140.24	115.41			1.0333	1.1963	7.1317	3	3	Median	1.5064	1.2375	NaN	1	1	Median	1.002	1.1963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0333	1.0791	NaN	1	1	Median	490520000	225120000	265400000	139130000	53739000	85389000	186490000	85375000	101110000	0	0	0	164900000	86003000	78898000	13757	2043	13053	83315;83316;83317	112541;112542;112543	112541			3	
ESEVLIGNLGDK	1	Unmodified	1272.6561	0.65614609	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		53.367	52.699	2	0.00010968	46827	160511_QHF_FH_JSI9i_1	88.056	63.113			0.91347	0.73413	27.784	3	1	Plateau	0.91347	0.73413	NaN	1	0	Median	0.38976	0.44174	NaN	1	1	Median	0.73388	0.69212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88046000	49459000	38588000	40874000	21338000	19536000	23369000	16387000	6981500	23804000	11734000	12070000	0	0	0	13758	3962	13054	83318;83319;83320	112544;112545;112546;112547	112547			3	
ESFADVLPEAAALVK	1	Unmodified	1558.8243	0.82427405	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.19	101.09	2	0.00015382	91816	160511_QHF_FH_JSI11i_1	94.191	53.695			0.88161	0.86003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88161	0.86003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58070000	35959000	22111000	0	0	0	0	0	0	58070000	35959000	22111000	0	0	0	13759	2984	13055	83321	112548	112548			1	
ESFAEMNR	0	Unmodified	982.41783	0.41783007	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			3	2	4	3	23.894	21.889	2	6.837E-30	18198	160511_QHF_FH_JSI11i_2	197.6	161.01			1.0584	0.99571	18.133	12	0	Median	1.1009	0.93601	5.658	3	0	Plateau	0.93315	1.129	21.668	2	0	Median	0.99526	0.99281	28.751	4	0	Median	1.0066	1.0863	11.42	3	0	Plateau	3665800000	1938000000	1727800000	730500000	335140000	395370000	930490000	559430000	371060000	1084500000	580630000	503830000	920370000	462810000	457560000	13760	1026	13056	83322;83323;83324;83325;83326;83327;83328;83329;83330;83331;83332;83333	112549;112550;112551;112552;112553;112554;112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570	112567			22	
ESFAEMNR	0	Oxidation (M)	998.41274	0.4127447	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5.15	5	5				1	2			1	4	3	5	18.102	15.975	2	0.010931	19400	160511_QHF_FH_JSI12i_1	60.074	42.226			0.88842	0.91609	16.021	12	0	Median	0.97375	0.82985	NaN	1	0	Median	0.81967	0.96057	17.357	4	0	Median	1.0145	0.99918	18.978	3	0	Median	0.83943	0.91609	15.095	4	0	Median	971630000	526990000	444640000	65489000	31373000	34116000	333940000	176520000	157420000	218860000	113430000	105430000	353350000	205660000	147680000	13761	1026	13056	83334;83335;83336;83337;83338;83339;83340;83341;83342;83343;83344;83345;83346	112571;112572;112573;112574;112575;112576;112577	112573		625	7	
ESFDGSVR	0	Unmodified	895.40356	0.40356022	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.13	4	2				2	3			3	2	3	3	17.786	13.802	2	0.00010096	13383	160511_QHF_FH_JSI9i_1	129.68	79.658			1.0171	1.0315	11.609	11	0	Median	1.2449	1.0315	19.864	3	0	Median	0.92262	1.1105	3.1149	2	0	Median	1.0003	0.977	3.5105	3	0	Plateau	0.92441	1.0175	9.7816	3	0	Median	14200000000	7035800000	7164300000	3177900000	1401100000	1776700000	4027700000	2152200000	1875600000	3734600000	1843000000	1891600000	3259900000	1639500000	1620400000	13762	1154	13057	83347;83348;83349;83350;83351;83352;83353;83354;83355;83356;83357	112578;112579;112580;112581;112582;112583;112584;112585;112586;112587	112585			10	
ESFESQFLADTER	0	Unmodified	1557.6947	0.69471644	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	66.406	65.666	2	3.1684E-06	59614	160511_QHF_FH_JSI10i_1	122.39	107.97			3.5687	3.3875	54.97	5	4	Median	4.2168	3.3875	NaN	1	1	Median	2.5673	3.0316	NaN	1	1	Median	3.5687	3.4788	NaN	1	1	Median	1.9685	2.1121	98.04	2	1	Median	986440000	205870000	780570000	177940000	17389000	160550000	300490000	82442000	218050000	259140000	43855000	215290000	248860000	62182000	186680000	13763	2453	13058	83358;83359;83360;83361;83362	112588;112589;112590;112591;112592	112591			5	
ESFETFINK	1	Unmodified	1113.5342	0.53424004	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	56.801	55.911	2	6.8283E-07	49051	160511_QHF_FH_JSI9i_2	146.27	102.45			1.14	0.94821	42.509	6	3	Median	1.14	0.94821	4.2675	2	2	Median	0.39635	0.49154	NaN	1	0	Median	1.1006	1.0857	39.096	2	1	Median	1.461	1.6157	NaN	1	0	Median	749610000	380830000	368780000	161760000	64343000	97413000	80493000	60149000	20344000	305860000	157750000	148110000	201500000	98581000	102910000	13764	2456	13059	83363;83364;83365;83366;83367;83368	112593;112594;112595;112596;112597;112598;112599;112600	112598			8	
ESFNPESYELDK	1	Unmodified	1456.6358	0.63580458	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	54.568	53.958	2	1.2462E-07	47946	160511_QHF_FH_JSI9i_1	136.02	127.44			0.74498	0.76045	20.957	5	2	Median	0.92097	0.76045	NaN	1	0	Median	0.74498	0.87494	NaN	1	1	Median	0.66527	0.64218	9.5678	2	1	Median	0.98243	1.0298	NaN	1	0	Median	1410500000	773010000	637500000	217440000	89274000	128160000	253000000	156870000	96132000	707780000	419620000	288160000	232290000	107250000	125040000	13765	1691	13060	83369;83370;83371;83372;83373	112601;112602;112603;112604;112605;112606;112607;112608	112606			8	
ESFREQDIYLPIANVAR	0	Unmodified	2020.0378	0.037789075	1255	P25208	NFYB	Nuclear transcription factor Y subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	78.481	78.226	3	0.00050447	67914	160511_QHF_FH_JSI12i_3	54.281	46.689			0.61986	0.62919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61986	0.62919	NaN	1	1	Median	51145000	32956000	18189000	0	0	0	0	0	0	0	0	0	51145000	32956000	18189000	13766	1255	13061	83374	112609	112609			1	
ESFSLVQVQPGVDIIR	0	Unmodified	1785.9625	0.96249887	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	3	1	90.687	90.257	2	7.2075E-17	82125	160511_QHF_FH_JSI11i_1	154.28	132.72			0.84553	0.90061	7.4428	5	3	Median	1.052	0.90846	NaN	1	0	Median	0.80569	0.97492	NaN	1	1	Median	0.87405	0.85467	7.4041	2	1	Median	0.81321	0.82931	NaN	1	1	Median	113560000	62203000	51356000	19632000	9532600	10099000	18510000	9200500	9309100	56749000	34764000	21985000	18669000	8705100	9963400	13767	1585	13062	83375;83376;83377;83378;83379;83380	112610;112611;112612;112613;112614;112615	112612			6	
ESFTLLPDTDPLTR	0	Unmodified	1603.8094	0.80935227	3575	Q8N9B5	JMY	Junction-mediating and -regulatory protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		86.553	86.191	2	0.00096178	78253	160511_QHF_FH_JSI10i_1	64.439	50.776			0.47833	0.45744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47833	0.45744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21071000	17343000	3727100	0	0	0	0	0	0	21071000	17343000	3727100	0	0	0	13768	3575	13063	83381;83382	112616;112617	112617			2	
ESGASVDEVAR	0	Unmodified	1118.5204	0.52038089	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	18.316	15.572	2	9.5965E-19	13236	160511_QHF_FH_JSI11i_1	167.67	136.6			0.98951	0.9511	12.386	6	2	Median	1.2438	1.0081	NaN	1	0	Median	0.7547	0.88216	NaN	1	0	Median	0.98974	0.9511	7.9407	2	1	Median	0.89147	0.96197	24.718	2	1	Median	1424800000	670140000	754620000	415890000	191300000	224600000	386390000	188030000	198360000	336210000	142830000	193370000	286270000	147980000	138290000	13769	1712	13064	83383;83384;83385;83386;83387;83388	112618;112619;112620;112621;112622;112623	112618			6	
ESGDREALQLWSALQLK	1	Unmodified	1943.0112	0.011239973	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	92.917	92.906	3	1.1437E-05	80463	160511_QHF_FH_JSI12i_3	92.211	75.812			1.1193	1.0986	9.554	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0988	1.0269	NaN	1	1	Median	1.1402	1.1754	NaN	1	1	Median	148970000	63745000	85228000	0	0	0	0	0	0	49697000	18455000	31243000	99275000	45290000	53985000	13770	4817	13065	83389;83390	112624;112625;112626	112626			3	
ESGFSYPNFSLPAANGLSSGVGGGGGK	1	Unmodified	2513.1823	0.18228106	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	90.56	90.11	3	1.9463E-10	82030	160511_QHF_FH_JSI12i_1	77.445	73.851			0.82735	0.88676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82735	0.88676	NaN	1	1	Median	36458000	25126000	11332000	0	0	0	0	0	0	0	0	0	36458000	25126000	11332000	13771	1684	13066	83391	112627	112627			1	
ESGLISTKK	2	Unmodified	961.54441	0.5444108	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.118	11.207	2	0.019879	8453	160511_QHF_FH_JSI12i_3	58.981	29.832			0.50571	0.49893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50571	0.49893	NaN	1	1	Median	30381000	18319000	12061000	0	0	0	0	0	0	0	0	0	30381000	18319000	12061000	13772	5070	13067	83392	112628	112628			1	
ESGMNLNPEVEGTLIR	0	Unmodified	1757.8618	0.86179854	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.699	70.159	2	3.2624E-15	62396	160511_QHF_FH_JSI9i_1	196.11	153.71			0.9414	0.96933	2.9764	4	0	Median	1.2069	0.9868	NaN	1	0	Median	0.82096	0.98893	NaN	1	0	Median	0.95658	0.92977	NaN	1	0	Median	0.92646	0.95216	NaN	1	0	Median	380240000	191690000	188550000	73070000	30306000	42764000	81612000	45873000	35739000	144750000	73660000	71092000	80802000	41847000	38955000	13773	4036	13068	83393;83394;83395;83396	112629;112630;112631;112632;112633;112634;112635;112636;112637	112637			9	
ESGMSSLYVFNPIFGK	1	Unmodified	1774.86	0.86000763	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			101.11	101.03	2	6.5764E-09	89529	160511_QHF_FH_JSI10i_2	176.18	160.09			2.8669	3.4829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8669	3.4829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140360000	47078000	93286000	0	0	0	140360000	47078000	93286000	0	0	0	0	0	0	13774	3562	13069	83397	112638	112638			1	
ESGNDTIDEEELILPNR	0	Unmodified	1942.912	0.91197944	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	67.411	66.899	2	1.872E-28	60965	160511_QHF_FH_JSI12i_1	225.09	197.66			0.94893	1.13	11.812	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.94893	1.13	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98047	1.0047	13.671	2	2	Median	103650000	50717000	52936000	0	0	0	36961000	19940000	17022000	0	0	0	66692000	30778000	35914000	13775	3849	13070	83398;83399;83400;83401	112639;112640;112641;112642;112643	112640			5	
ESGNSQELAR	0	Unmodified	1089.5051	0.50506518	3351	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.6252	7.273	2	0.012872	5223	160511_QHF_FH_JSI12i_1	54.539	30.584			0.77582	0.79812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77582	0.79812	NaN	1	1	Median	54307000	29962000	24345000	0	0	0	0	0	0	0	0	0	54307000	29962000	24345000	13776	3351	13071	83402	112644	112644			1	
ESGPSGIETELR	0	Unmodified	1273.615	0.61500956	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.167	37.797	2	9.2704E-05	33875	160511_QHF_FH_JSI10i_1	84.896	50.364			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13777	3676	13072	83403	112645	112645			1	
ESGSDAWK	1	Unmodified	878.37701	0.37701112	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			11.573	11.03	2	0.015282	8596	160511_QHF_FH_JSI9i_1	50.607	40.857			0.29127	0.28891	52.309	2	1	Median	0.50429	0.41822	NaN	1	0	Median	0.16823	0.19959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181580000	139860000	41723000	57776000	33657000	24119000	123800000	106200000	17604000	0	0	0	0	0	0	13778	1659	13073	83404;83405	112646;112647	112647			2	
ESGVDIAAGNMLVK	1	Unmodified	1402.7126	0.71261511	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.65	10					2	2			2	4	3	5	66.032	63.258	2;3	2.6052E-21	57087	160511_QHF_FH_JSI10i_1	214.82	183.4			1.0373	1.0567	53.387	12	3	Median	1.4003	1.1494	3.0427	2	0	Median	0.76877	0.9267	8.5951	3	0	Plateau	1.0493	1.0214	0.12571	2	1	Median	1.0264	1.1845	85.841	5	2	Median	1819500000	949100000	870410000	468560000	205190000	263370000	405920000	270600000	135310000	440140000	210610000	229530000	504890000	262690000	242200000	13779	1205	13074	83406;83407;83408;83409;83410;83411;83412;83413;83414;83415;83416;83417;83418;83419	112648;112649;112650;112651;112652;112653;112654;112655;112656;112657;112658;112659;112660;112661;112662;112663;112664;112665;112666;112667;112668;112669;112670;112671	112662			24	
ESGVDIAAGNMLVK	1	Oxidation (M)	1418.7075	0.70752973	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	60.006	50.479	2	9.5316E-05	45302	160511_QHF_FH_JSI12i_1	79.201	54.347			1.8789	1.99	18.13	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9301	2.2622	NaN	1	1	Median	1.8291	1.7506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7648900	3574300	4074600	0	0	0	4345800	2096500	2249200	3303100	1477800	1825300	0	0	0	13780	1205	13074	83420;83421;83422	112672;112673;112674	112672		827	3	
ESGVFEGIPTYR	0	Unmodified	1353.6565	0.65648044	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							4	2	2	2	61.644	60.786	2	7.4505E-23	52947	160511_QHF_FH_JSI11i_2	176.65	156.51			1.1312	1.1431	17.194	9	1	Median	1.1687	0.9784	28.174	3	1	Plateau	0.81243	0.96977	8.1135	2	0	Median	1.1604	1.1689	3.1584	2	0	Median	1.0611	1.1491	4.6823	2	0	Median	943220000	502460000	440760000	192390000	95206000	97181000	226700000	128960000	97738000	324620000	174250000	150380000	199510000	104050000	95464000	13781	3749	13075	83423;83424;83425;83426;83427;83428;83429;83430;83431;83432	112675;112676;112677;112678;112679;112680;112681;112682;112683;112684;112685;112686;112687;112688;112689;112690	112688			16	
ESGVGQTDWSGVEAGEFLK	1	Unmodified	1994.9222	0.92215019	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	79.428	78.956	2	1.5152E-20	71537	160511_QHF_FH_JSI10i_1	190.86	174.24			0.90471	0.98023	29.265	4	4	Median	0.71458	0.59249	NaN	1	1	Median	0.97221	1.0952	NaN	1	1	Median	1.1289	1.1084	NaN	1	1	Median	0.84189	0.87736	NaN	1	1	Median	151780000	73852000	77927000	33470000	18355000	15115000	30441000	14950000	15491000	41758000	17421000	24338000	46110000	23126000	22984000	13782	4581	13076	83433;83434;83435;83436;83437	112691;112692;112693;112694;112695;112696;112697	112695			7	
ESGYAGK	1	Unmodified	710.32352	0.32351898	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	4.7847	4.4943	2	0.029275	2390	160511_QHF_FH_JSI12i_1	52.683	27.685			0.25487	0.28934	159.87	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7458	0.89609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.087098	0.093426	NaN	1	0	Median	881170000	584710000	296460000	0	0	0	600160000	327650000	272510000	0	0	0	281010000	257060000	23947000	13783	1693	13077	83438;83439	112698;112699	112698			2	
ESGYNMIHFTPLQTLGLSR	0	Unmodified	2163.0783	0.078273681	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	94.391	94.12	3	1.9782E-05	81402	160511_QHF_FH_JSI12i_3	71.309	62.262			0.73733	0.77706	24.159	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0366	1.2166	NaN	1	0	Median	0.86438	0.83169	NaN	1	1	Median	0.73733	0.77706	NaN	1	0	Median	145950000	77689000	68258000	0	0	0	25748000	10653000	15095000	62032000	34584000	27447000	58167000	32451000	25715000	13784	1435	13078	83440;83441;83442	112700;112701;112702;112703;112704	112704			5	
ESHPATVFILFSDLNPLVTLGGNK	1	Unmodified	2568.3588	0.35878886	4362	Q9BQG2	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	98.465	89.023	3	2.5055E-05	48890	160513_QHF_FH_JSI12Kac_6	88.222	72.326			1.4884	1.5586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4884	1.5586	NaN	1	1	Median	48831000	27395000	21436000	0	0	0	0	0	0	0	0	0	48831000	27395000	21436000	13785	4362	13079	83443	112705	112705			1	
ESHRLPVDIAYK	1	Unmodified	1426.7569	0.75686319	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				43.046	41.995	3	0.060778	36731	160511_QHF_FH_JSI9i_2	29.328	16.968			1.0066	0.86528	NaN	1	1	Median	1.0066	0.86528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43796000	24413000	19383000	43796000	24413000	19383000	0	0	0	0	0	0	0	0	0	13786	1085	13080	83444	112706	112706			1	
ESHTAVVYTEK	1	Unmodified	1262.6143	0.61428128	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.97		7					1			2	2	3	1	15.127	13.673	2;3	8.8174E-05	10866	160511_QHF_FH_JSI11i_2	89.171	72.395			1.075	1.1508	33.668	8	3	Median	1.6816	1.4113	20.1	2	2	Median	0.97414	1.1941	17.084	2	0	Median	1.2161	1.2368	44.499	3	1	Plateau	0.76601	0.83509	NaN	1	0	Median	373010000	192540000	180460000	46582000	16152000	30430000	93454000	55402000	38052000	194720000	100040000	94685000	38250000	20953000	17297000	13787	1743	13081	83445;83446;83447;83448;83449;83450;83451;83452	112707;112708;112709;112710;112711;112712;112713	112713			7	
ESIDHEK	1	Unmodified	856.39266	0.39266118	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.926	4.7319	2	0.01483	2481	160511_QHF_FH_JSI11i_2	65.252	32.782			0.47883	0.48146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47883	0.48146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59699000	29636000	30064000	0	0	0	0	0	0	59699000	29636000	30064000	0	0	0	13788	1755	13082	83453	112714	112714			1	
ESIEEPSAK	1	Unmodified	988.47131	0.47130543	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	15.463	15.007	2	3.6011E-05	12532	160511_QHF_FH_JSI10i_1	99.7	73.806			0.85626	0.8705	26.656	5	3	Median	0.89684	0.74109	NaN	1	0	Median	0.83204	0.99331	NaN	1	0	Median	1.4005	1.3814	NaN	1	1	Median	0.7628	0.78887	13.925	2	2	Median	899490000	482010000	417480000	153490000	64888000	88605000	185080000	104510000	80575000	226300000	121380000	104910000	334620000	191240000	143390000	13789	552	13083	83454;83455;83456;83457;83458	112715;112716;112717;112718;112719;112720;112721	112718			7	
ESIESEIR	0	Unmodified	961.47164	0.47163978	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.63	26.056	2	0.0099826	22917	160511_QHF_FH_JSI10i_1	55.531	26.369			1.1289	1.2104	11.558	4	1	Median	1.4549	1.2127	NaN	1	0	Median	1.0196	1.2082	NaN	1	0	Median	1.0154	0.99926	NaN	1	1	Median	1.2498	1.3115	NaN	1	0	Median	402470000	175520000	226950000	97463000	35620000	61843000	111400000	51115000	60287000	115220000	54243000	60981000	78379000	34537000	43841000	13790	1846	13084	83459;83460;83461;83462	112722;112723;112724;112725	112724			4	
ESIESEIRR	0	Unmodified	1117.5728	0.57275081	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	22.53	21.962	2;3	2.5706E-11	18910	160511_QHF_FH_JSI10i_2	160.26	115.87			0.85352	0.92987	42.3	12	0	Median	1.2106	1.0253	14.474	2	0	Median	0.84116	1.0365	14.691	2	0	Median	0.87758	0.86558	35.57	4	0	Median	0.66519	0.70957	57.233	4	0	Median	5332700000	3078900000	2253900000	924010000	406160000	517850000	1142600000	706260000	436330000	1847700000	1076200000	771510000	1418400000	890210000	528170000	13791	1846	13085	83463;83464;83465;83466;83467;83468;83469;83470;83471;83472;83473;83474	112726;112727;112728;112729;112730;112731;112732;112733;112734;112735;112736;112737;112738;112739;112740;112741;112742;112743;112744	112739			19	
ESIGNVQVLLEYHIAYLK	1	Unmodified	2088.1255	0.12554145	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.78	100.65	3	3.9465E-07	88321	160511_QHF_FH_JSI11i_2	107.57	92.957			0.81499	0.81245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81499	0.81245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86941000	52008000	34933000	0	0	0	0	0	0	86941000	52008000	34933000	0	0	0	13792	1725	13086	83475	112745	112745			1	
ESIGSELGNSFASNIR	0	Unmodified	1679.8115	0.81147753	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	69.043	67.745	2	0.00054655	59470	160511_QHF_FH_JSI11i_2	94.547	72.977			0.82454	0.91255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82454	0.91255	NaN	1	1	Median	21027000	13376000	7650300	0	0	0	0	0	0	0	0	0	21027000	13376000	7650300	13793	3004	13087	83476;83477	112746;112747	112747			2	
ESIGSLQNGTHTPSTAMETAIPFR	0	Unmodified	2544.2279	0.22785104	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	71.853	71.704	3	2.9088E-14	62171	160511_QHF_FH_JSI12i_3	112.85	98.54			1.2414	1.2141	11.675	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4109	1.3185	NaN	1	1	Median	1.0923	1.1179	NaN	1	0	Median	101000000	44873000	56125000	0	0	0	0	0	0	50443000	18905000	31537000	50555000	25968000	24587000	13794	5053	13088	83478;83479	112748;112749;112750;112751;112752	112752			5	
ESILADK	1	Unmodified	774.41233	0.41233399	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4.25	5.63	3						1			1		2	1	22.629	20.177	2	0.019157	17733	160511_QHF_FH_JSI12i_1	58.782	19.976			0.81524	0.75729	48.704	4	2	Median	0.72929	0.59141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86662	0.85309	75.841	2	2	Median	0.9113	0.96969	NaN	1	0	Median	916850000	507110000	409740000	228190000	116040000	112150000	0	0	0	355430000	198690000	156730000	333240000	192380000	140860000	13795	573	13089	83480;83481;83482;83483	112753;112754;112755	112754			3	
ESILEKFSVR	1	Acetyl (K)	1248.6714	0.67140222	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	1	0	0	1	By MS/MS			By matching	11.5	0.5				1	1					1			1	87.484	79.524	2	0.079532	24205	160513_QHF_FH_JSI9Kac_1	36.557	10.173			1.875	1.7322	33.096	2	0	Median	1.6873	1.3708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0835	2.189	NaN	1	0	Median	64520000	23478000	41043000	55034000	20408000	34627000	0	0	0	0	0	0	9486200	3070100	6416000	13796	4945	13090	83484;83485	112756	112756			1	
ESILGGVLK	1	Unmodified	914.54368	0.54368251	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.67	6.03	4	1				4	3	3		3	5	4	3	42.88	35.487	2	0.0030544	33667	160511_QHF_FH_JSI10i_1	61.999	34.474			0.91887	1.0442	19.65	15	0	Median	1.3065	1.108	17.759	3	0	Median	0.88583	1.0442	18.786	5	0	Median	1.0142	0.98254	17.906	4	0	Median	1.4929	1.6	31.351	3	0	Plateau	2221200000	998620000	1222600000	403630000	155540000	248080000	662700000	340460000	322240000	731700000	313520000	418180000	423140000	189100000	234050000	13797	4181	13091	83486;83487;83488;83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500	112757;112758;112759;112760;112761;112762;112763;112764;112765;112766;112767;112768;112769;112770;112771;112772	112763			16	
ESIPLFTYGLIK	1	Unmodified	1379.7701	0.77005364	29	A6NHX0	GATSL2	GATS-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.15	100.02	2	0.00012432	88441	160511_QHF_FH_JSI10i_2	85.377	58.863			0.85158	0.83834	16.991	4	3	Median	0.89272	0.76934	NaN	1	1	Median	0.92039	1.1326	NaN	1	0	Median	0.81234	0.82898	NaN	1	1	Median	0.80657	0.8478	NaN	1	1	Median	66528000	36332000	30196000	11167000	6306600	4860500	21418000	13084000	8334400	20453000	9497200	10956000	13490000	7444500	6045400	13798	29	13092	83501;83502;83503;83504	112773;112774;112775;112776	112776			4	
ESISDVGFGMLK	1	Unmodified	1281.6275	0.6274885	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	2	2	77.908	77.402	2	8.8534E-06	70255	160511_QHF_FH_JSI11i_1	119.68	92.426			1.1472	1.1812	17.666	5	1	Median	0.99357	0.81214	NaN	1	1	Median	1.0041	1.207	NaN	1	0	Median	1.2242	1.1974	6.9907	2	0	Median	1.1472	1.1812	NaN	1	0	Median	277870000	139470000	138400000	35657000	21702000	13954000	81821000	41966000	39855000	108250000	49210000	59036000	52142000	26587000	25555000	13799	93	13093	83505;83506;83507;83508;83509;83510	112777;112778;112779;112780;112781;112782;112783	112777			6	
ESIVDVEGVVRK	1	Unmodified	1328.73	0.72997974	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.39		7	5					1		2	2	4	5	53.605	52.212	2;3	1.8183E-05	46084	160511_QHF_FH_JSI10i_2	94.402	84.89			1.07	1.191	38.696	13	7	Median	2.4888	2.0965	48.313	2	1	Median	0.7544	0.92727	35.393	2	1	Median	1.2569	1.2023	39.169	4	2	Median	1.07	1.2552	20.33	5	3	Plateau	1345000000	620810000	724160000	168400000	63225000	105170000	252690000	133750000	118940000	371900000	173400000	198500000	551980000	250430000	301550000	13800	1064	13094	83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523	112784;112785;112786;112787;112788;112789;112790;112791;112792;112793;112794;112795;112796;112797;112798;112799;112800;112801	112794			17	
ESKDPADETEAD	1	Unmodified	1305.5208	0.5208344	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	10.294	7.6235	2	0.00051682	6993	160511_QHF_FH_JSI12i_1	94.297	90.374			0.79131	0.83776	23.743	6	0	Median	1.0938	0.8985	NaN	1	0	Median	0.83882	1.0188	NaN	1	0	Median	0.61034	0.58468	11.769	2	0	Median	0.79131	0.83776	2.057	2	0	Median	360340000	188150000	172190000	62211000	27680000	34531000	65563000	31680000	33884000	86758000	50679000	36080000	145810000	78109000	67699000	13801	1105	13095	83524;83525;83526;83527;83528;83529	112802;112803;112804;112805;112806;112807;112808;112809;112810	112806			9	
ESKEEETSIDVAGKPNEVTK	3	Unmodified	2189.0699	0.069936644	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	3	3	3							1	3	1	4	29.79	29.278	3;4	4.8528E-06	26268	160511_QHF_FH_JSI10i_1	91.166	75.223			0.63706	0.88544	23.898	8	3	Linear	1.0596	0.90405	NaN	1	0	Median	0.5659	0.65881	7.0844	3	2	Median	0.51421	0.48158	NaN	1	1	Median	0.91278	0.98265	18.718	3	0	Plateau	573080000	304180000	268910000	76634000	35538000	41096000	225830000	146180000	79651000	21879000	14746000	7133400	248740000	107720000	141030000	13802	1812	13096	83530;83531;83532;83533;83534;83535;83536;83537;83538	112811;112812;112813;112814;112815;112816;112817;112818;112819;112820;112821	112816			11	
ESKKEDLVFIFWAPESAPLK	3	Unmodified	2333.2307	0.2307348	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	0	0	0	2	By matching	By MS/MS		By MS/MS	8.78	6.46			5						4	1	2		6	94.256	90.987	3;4	2.1588E-06	86078	160511_QHF_FH_JSI12i_3	85.231	82.308			0.87992	0.99262	28.434	9	2	Median	0.65202	0.56107	NaN	1	0	Median	0.8023	0.92866	9.4186	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0903	1.1246	22.63	6	2	Median	580790000	303960000	276830000	86722000	51531000	35191000	192460000	98265000	94192000	0	0	0	301610000	154160000	147450000	13803	1236;5500	13097	83539;83540;83541;83542;83543;83544;83545;83546;83547	112822;112823;112824;112825;112826;112827;112828;112829;112830;112831;112832;112833;112834;112835	112824			13	
ESKLPGDK	2	Acetyl (K)	914.47091	0.4709115	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		23.881	16.317	2	0.05409	10391	160513_QHF_FH_JSI11Kac_3	47.574	6.145			0.2469	0.24825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2469	0.24825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6303800	4875200	1428700	0	0	0	0	0	0	6303800	4875200	1428700	0	0	0	13804	1299	13098	83548	112836	112836			1	
ESLAEEHEGLVGEGQR	0	Unmodified	1738.8122	0.81220581	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	31.254	30.376	3	1.2981E-07	26653	160511_QHF_FH_JSI10i_2	83.37	72.602			1.1358	1.168	9.8092	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1358	1.407	NaN	1	1	Median	1.1775	1.168	NaN	1	0	Median	1.0702	1.2152	NaN	1	0	Median	165480000	74524000	90956000	0	0	0	47945000	24430000	23515000	65914000	26749000	39164000	51622000	23344000	28278000	13805	2297	13099	83549;83550;83551;83552	112837;112838;112839;112840;112841	112841			5	
ESLAESAAAYTK	1	Unmodified	1239.5983	0.59829686	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.25	6.26	2					1	1				2	2		45.519	40.343	2	3.2373E-05	36352	160511_QHF_FH_JSI11i_1	113.69	94.416			1.0468	1.1345	5.5439	4	2	Median	NaN	NaN	NaN	0	0	Median	0.96119	1.1345	1.3395	2	1	Median	1.1984	1.1897	8.2357	2	1	Median	NaN	NaN	NaN	0	0	Median	348100000	154650000	193450000	0	0	0	148670000	74685000	73984000	199430000	79961000	119470000	0	0	0	13806	4759	13100	83553;83554;83555;83556	112842;112843;112844;112845	112842			3	
ESLAGNKPANAVLHK	2	Unmodified	1547.842	0.8419898	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	24.386	23.636	3;4	0.00070442	19476	160511_QHF_FH_JSI10i_3	43.813	36.774			1.0077	1.1528	27.532	7	1	Median	1.003	0.80834	0.86842	2	0	Median	1.1049	1.2809	14.908	2	0	Median	1.3052	1.2295	6.6528	2	0	Median	0.69584	0.69575	NaN	1	1	Median	415020000	204540000	210480000	85185000	33278000	51907000	104530000	54196000	50337000	170990000	83777000	87208000	54320000	33293000	21027000	13807	2318	13101	83557;83558;83559;83560;83561;83562;83563	112846;112847;112848;112849;112850;112851;112852;112853;112854	112849			9	
ESLCDSPHQNLSRPLLENKLK	2	Acetyl (K)	2519.2802	0.28022097	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			65.608	57.581	4	0.027962	31670	160513_QHF_FH_JSI10Kac_6	35.174	28.404			2.0029	2.4185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0029	2.4185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21849000	5875700	15973000	0	0	0	21849000	5875700	15973000	0	0	0	0	0	0	13808	238	13102	83564	112855	112855			1	
ESLDDLTNLVVK	1	Unmodified	1344.7137	0.71366097	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	86.94	86.415	2	6.0348E-11	78775	160511_QHF_FH_JSI12i_1	177.78	137.78			0.87789	0.89609	14.879	5	2	Median	0.98651	0.81005	27.614	2	2	Median	0.7255	0.85179	NaN	1	0	Median	0.90896	0.89609	NaN	1	0	Median	0.87789	0.91255	NaN	1	0	Median	798060000	414000000	384070000	215980000	99415000	116560000	235130000	120770000	114360000	194970000	108700000	86266000	151990000	85107000	66881000	13809	1060	13103	83565;83566;83567;83568;83569	112856;112857;112858;112859;112860;112861;112862;112863;112864;112865;112866;112867	112860			12	
ESLDVYELDAK	1	Unmodified	1280.6136	0.61361257	2431	Q13510	ASAH1	Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.756	57.218	2	0.00011158	51882	160511_QHF_FH_JSI11i_1	97.597	55.309			1.143	1.1634	96.64	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60472	0.58742	NaN	1	1	Median	2.1603	2.3041	NaN	1	1	Median	55689000	21847000	33843000	0	0	0	0	0	0	15279000	9447100	5832100	40410000	12400000	28011000	13810	2431	13104	83570;83571;83572	112868;112869;112870;112871	112869			4	
ESLEAAKEK	2	Acetyl (K)	1045.5292	0.52915466	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	28.374	20.649	2	0.023161	12507	160513_QHF_FH_JSI11Kac_3	51.445	21.702			0.76849	0.78363	17.822	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70421	0.69084	NaN	1	0	Median	0.83865	0.88887	NaN	1	0	Median	18942000	11979000	6963100	0	0	0	0	0	0	8978400	5633200	3345200	9963500	6345600	3617800	13811	3341	13105	83573;83574	112872	112872	2847		1	
ESLEALLQR	0	Unmodified	1057.5768	0.57677356	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	65.106	63.806	2	0.00018322	54820	160511_QHF_FH_JSI12i_2	91.783	33.497			0.74584	0.84543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74584	0.84543	NaN	1	1	Median	51924000	25813000	26112000	0	0	0	0	0	0	0	0	0	51924000	25813000	26112000	13812	623	13106	83575;83576	112873;112874	112874			2	
ESLEDQNLK	1	Unmodified	1074.5193	0.51931826	3690	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		21.587	21.06	2	0.047359	17905	160511_QHF_FH_JSI9i_1	36.395	10.011			0.77562	0.70549	30.162	3	0	Median	0.85725	0.70549	NaN	1	0	Median	0.77562	0.91735	NaN	1	0	Median	0.51723	0.50264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	261600000	146450000	115150000	100180000	51912000	48271000	73762000	41296000	32467000	87655000	53242000	34413000	0	0	0	13813	3690	13107	83577;83578;83579	112875	112875			1	
ESLETPSNGR	0	Unmodified	1088.5098	0.5098162	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	14.928	12.669	2	3.5598E-05	10854	160511_QHF_FH_JSI12i_1	105.52	51.363			1.1681	1.0007	15.416	4	2	Linear	1.1674	0.95048	NaN	1	0	Median	0.83114	0.99643	NaN	1	0	Median	1.3645	1.3054	NaN	1	1	Median	1.1689	1.2223	NaN	1	1	Median	383130000	191190000	191940000	134050000	57975000	76076000	125270000	64579000	60690000	3337600	1366500	1971000	120470000	67269000	53205000	13814	1439	13108	83580;83581;83582;83583	112876;112877;112878	112876			3	
ESLGSEEESGK	1	Unmodified	1150.499	0.49897675	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	11.108	10.522	2	0.011179	8020	160511_QHF_FH_JSI9i_1	68.626	56.099			0.69678	0.64375	16.549	2	0	Median	0.89169	0.72366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54448	0.57265	NaN	1	0	Median	89600000	52921000	36678000	48708000	27226000	21482000	0	0	0	0	0	0	40892000	25696000	15196000	13815	5658	13109	83584;83585	112879;112880	112880			0	
ESLHEVSK	1	Unmodified	927.46616	0.46616048	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.6354	8.1923	2	0.0020032	6067	160511_QHF_FH_JSI9i_2	93.429	37.418			0.57945	0.60639	78.726	4	4	Median	0.37123	0.31987	NaN	1	1	Median	0.3322	0.40191	NaN	1	1	Median	0.90444	0.9149	NaN	1	1	Median	1.602	1.7801	NaN	1	1	Median	488600000	292640000	195960000	107620000	77300000	30324000	158250000	116440000	41809000	133850000	63422000	70425000	88884000	35478000	53406000	13816	346	13110	83586;83587;83588;83589	112881;112882;112883;112884	112882			4	
ESLIDGIK	1	Unmodified	873.48075	0.48074791	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	5.01	12	5					4			4	5	6	6	51.285	48.648	1;2	0.00021531	41494	160511_QHF_FH_JSI11i_1	119.29	0			1.0133	1.0738	12.928	21	1	Median	1.4157	1.1737	18.586	4	0	Median	0.93653	1.0919	17.624	5	1	Median	1.0177	1.0112	10.095	6	0	Median	0.98303	1.0178	8.4427	6	0	Median	4472800000	2040600000	2432200000	910710000	382260000	528450000	1101600000	507940000	593620000	1384200000	644900000	739270000	1076400000	505540000	570840000	13817	1234	13111	83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609;83610	112885;112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896;112897;112898;112899;112900;112901;112902;112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915;112916;112917;112918;112919;112920;112921;112922	112887			35	
ESLLAEQR	0	Unmodified	944.49271	0.49270958	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	22.74	21.891	2	0.00023757	18921	160511_QHF_FH_JSI10i_2	117.4	60.118			0.96163	1.014	6.9486	4	0	Median	1.0393	0.89148	NaN	1	0	Median	0.82782	1.0392	NaN	1	0	Median	1.0163	1.0169	NaN	1	0	Median	0.9099	1.0111	NaN	1	0	Median	386910000	186060000	200850000	80203000	36246000	43957000	97028000	49970000	47058000	120830000	60169000	60664000	88849000	39675000	49174000	13818	1016	13112	83611;83612;83613;83614	112923;112924;112925;112926;112927	112927			5	
ESLLLQVR	0	Unmodified	956.56548	0.56548059	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0				By MS/MS	15	0								1					1	63.432	52.698	2	0.031033	26727	160513_QHF_FH_JSI12Kac_5	50.127	21.953			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13819	4558	13113	83615	112928	112928			1	
ESLLVSHPSVQTK	1	Unmodified	1423.7671	0.76709352	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	1	2	37.716	34.714	2;3	7.3001E-05	29484	160511_QHF_FH_JSI12i_2	57.288	51.795			0.93306	1.0324	82.253	5	2	Median	1.2366	1.0533	NaN	1	0	Median	0.79623	0.9693	NaN	1	0	Median	1.5493	1.4882	NaN	1	1	Median	0.40044	0.43685	121.63	2	1	Median	336990000	173420000	163570000	85135000	46395000	38740000	139150000	73436000	65714000	2553600	933470	1620100	110150000	52656000	57493000	13820	3306	13114	83616;83617;83618;83619;83620	112929;112930;112931;112932	112929			4	
ESLMQFSK	1	Unmodified	968.46372	0.46371763	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.127	42.159	2	0.00062714	36852	160511_QHF_FH_JSI9i_2	102	59.773			1.122	1.1903	8.709	4	0	Median	1.418	1.2067	NaN	1	0	Median	0.82309	1.0056	NaN	1	0	Median	1.1727	1.1809	NaN	1	0	Median	1.0735	1.1997	NaN	1	0	Median	412090000	198310000	213770000	81137000	29826000	51311000	65887000	39270000	26617000	142710000	65711000	76998000	122350000	63506000	58846000	13821	3904	13115	83621;83622;83623;83624	112933;112934;112935;112936;112937	112935			5	
ESLMSHAIELK	1	Unmodified	1256.6435	0.64347291	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	50.852	50.161	2;3	4.48E-15	44186	160511_QHF_FH_JSI11i_3	143.96	114.15			0.85544	0.90807	53.802	4	1	Median	1.0086	0.85876	NaN	1	0	Median	0.77882	0.9613	NaN	1	0	Median	0.9396	0.9602	NaN	1	0	Median	0.28381	0.31719	NaN	1	1	Median	387010000	214830000	172180000	76487000	43060000	33427000	100270000	57434000	42834000	138890000	67146000	71742000	71365000	47186000	24178000	13822	5495	13116	83625;83626;83627;83628;83629	112938;112939;112940;112941;112942	112938			2	
ESLNLEDQIESDESELK	1	Unmodified	1976.9062	0.90622536	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		76.36	76.039	2	3.8885E-11	69180	160511_QHF_FH_JSI11i_1	110.55	101.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13823	4557	13117	83630	112943	112943			1	
ESLNVDVVK	1	Unmodified	1001.5393	0.53932542	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			41.849	41.448	2	0.0098117	37211	160511_QHF_FH_JSI10i_1	51.113	32.574			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13824	2258	13118	83631	112944	112944			1	
ESLPALR	0	Unmodified	784.4443	0.44430282	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.072	32.83	2	0.057163	29450	160511_QHF_FH_JSI11i_1	46.37	17.032			0.90908	0.88648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90908	0.88648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58181000	30272000	27910000	0	0	0	0	0	0	58181000	30272000	27910000	0	0	0	13825	1711	13119	83632	112945	112945			1	
ESLPELSTAQQNK	1	Unmodified	1443.7205	0.72053726	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.567	39.93	2	2.5307E-07	35996	160511_QHF_FH_JSI11i_1	137.89	123.66			0.88653	0.81594	15.419	4	0	Linear	1.4297	1.1807	NaN	1	0	Median	0.72623	0.86127	NaN	1	0	Median	0.89886	0.84886	NaN	1	0	Median	0.87438	0.90683	NaN	1	0	Median	223720000	107210000	116510000	43991000	15649000	28342000	61321000	35601000	25720000	64870000	29207000	35663000	53541000	26756000	26784000	13826	4814	13120	83633;83634;83635;83636	112946;112947;112948;112949;112950;112951	112947			6	
ESLPPAAEPSPVSK	1	Unmodified	1407.7246	0.72456001	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	39.444	38.832	2	0.0030345	34857	160511_QHF_FH_JSI11i_1	57.348	26.275			0.70621	0.71159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70621	0.71159	NaN	1	1	Median	24829000	16159000	8669100	0	0	0	0	0	0	0	0	0	24829000	16159000	8669100	13827	5070	13121	83637;83638	112952;112953	112952			2	
ESLPVIAAPSMWTRPQIK	1	Oxidation (M)	2039.0874	0.087381804	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			77.316	75.908	3	0.0041382	62437	160511_QHF_FH_JSI9i_3	52.172	43.126			1.4213	1.3977	73.953	2	2	Median	1.0063	0.82854	NaN	1	1	Median	2.0073	2.3579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48545000	20096000	28449000	21709000	11703000	10006000	26836000	8393200	18443000	0	0	0	0	0	0	13828	4700	13122	83639;83640	112954;112955	112955		2518	2	
ESLPVIAAPSMWTRPQIK	1	Unmodified	2023.0925	0.092467182	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			84.241	83.605	3	0.00016255	74314	160511_QHF_FH_JSI10i_2	79.013	73.804			0.77798	0.9582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77798	0.9582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71901000	38285000	33616000	0	0	0	71901000	38285000	33616000	0	0	0	0	0	0	13829	4700	13122	83641	112956	112956			1	
ESLPVKPRPK	2	Unmodified	1149.687	0.68699271	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	2	By MS/MS	By matching	By MS/MS		3	0			4							1	1	2		14.695	14.199	3;4	0.0024395	11244	160511_QHF_FH_JSI9i_3	51.268	45.927			0.86597	0.72782	7.3151	4	0	Linear	0.9293	0.74688	NaN	1	0	Median	0.68815	0.79956	NaN	1	0	Median	0.73189	0.69129	3.6262	2	0	Median	NaN	NaN	NaN	0	0	Median	189020000	98856000	90163000	57951000	25981000	31970000	33133000	18425000	14708000	97936000	54450000	43485000	0	0	0	13830	4761	13123	83642;83643;83644;83645	112957;112958;112959	112959			3	
ESLQQMAEVTR	0	Unmodified	1290.6238	0.6238001	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		47.346	46.449	2	3.4817E-07	40029	160511_QHF_FH_JSI11i_2	119.03	61.32			0.86367	0.80111	12.444	4	3	Median	1.0329	0.89027	0.94387	2	2	Median	0.57578	0.71072	NaN	1	1	Median	0.73929	0.7257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96282000	50749000	45533000	40283000	19331000	20952000	14431000	10272000	4158700	41568000	21146000	20422000	0	0	0	13831	1050	13124	83646;83647;83648;83649	112960;112961;112962;112963	112962			4	
ESLREVQLEELEAAR	0	Unmodified	1770.9112	0.91119158	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		57.501	57.501	3	0.0021005	50984	160511_QHF_FH_JSI11i_3	46.892	25.645			0.68256	0.63497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68256	0.63497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67792000	45218000	22573000	0	0	0	0	0	0	67792000	45218000	22573000	0	0	0	13832	1739	13125	83650	112964	112964			1	
ESLSEEEAQK	1	Unmodified	1148.5197	0.51971219	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	14.599	12.848	2	4.7994E-69	10727	160511_QHF_FH_JSI10i_1	241.96	170.58			1.0975	1.14	19.049	5	0	Median	1.0975	0.91774	NaN	1	0	Median	0.84167	0.96906	NaN	1	0	Median	1.2086	1.1504	NaN	1	0	Median	1.213	1.3056	19.184	2	0	Median	1274100000	635400000	638700000	339680000	150240000	189440000	326670000	173210000	153460000	316460000	145890000	170570000	291280000	166060000	125220000	13833	4521	13126	83651;83652;83653;83654;83655	112965;112966;112967;112968;112969;112970;112971;112972;112973	112969			9	
ESLSGQAVR	0	Unmodified	945.48796	0.48795855	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			2	1	3	2	14.216	12.627	2	0.00066253	10623	160511_QHF_FH_JSI12i_1	76.478	31.786			1.07	1.0006	26.058	7	2	Median	0.98059	0.82126	6.5035	2	0	Median	1.2923	1.5936	NaN	1	0	Median	1.2895	1.2678	0.83146	2	2	Median	0.84382	0.93278	9.9297	2	0	Median	945140000	453190000	491950000	300570000	153540000	147030000	24771000	11472000	13299000	217730000	90059000	127670000	402070000	198130000	203940000	13834	1611	13127	83656;83657;83658;83659;83660;83661;83662;83663	112974;112975;112976;112977;112978;112979;112980;112981;112982;112983;112984	112976			11	
ESLSSYEHSASAEMK	1	Oxidation (M)	1670.7094	0.70938023	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.839	65.231	2	0.010342	59341	160511_QHF_FH_JSI12i_1	51.092	37.186			1.0308	0.91571	22.298	4	0	Median	0.98236	0.79554	NaN	1	0	Median	0.69422	0.81451	NaN	1	0	Median	1.0815	1.0295	NaN	1	0	Median	1.2494	1.2782	NaN	1	0	Median	899780000	467630000	432150000	408770000	211290000	197480000	107650000	60831000	46816000	316550000	163600000	152960000	66803000	31914000	34889000	13835	3821	13128	83664;83665;83666;83667	112985;112986	112985		2297	2	
ESLSTSSDLYK	1	Unmodified	1228.5823	0.58231245	3692	Q8TB72	PUM2	Pumilio homolog 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.351	33.77	2	0.0055296	30542	160511_QHF_FH_JSI12i_1	63.076	40.839			0.65443	0.69886	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65443	0.69886	NaN	1	1	Median	39569000	25895000	13674000	0	0	0	0	0	0	0	0	0	39569000	25895000	13674000	13836	3692	13129	83668	112987	112987			1	
ESLSYVVESIEK	1	Unmodified	1381.6977	0.69767655	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	74.812	74.019	2	0.0025038	64011	160511_QHF_FH_JSI12i_2	59.265	27.63			0.47158	0.41277	NaN	1	1	Median	0.47158	0.41277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18610000	11717000	6893000	18610000	11717000	6893000	0	0	0	0	0	0	0	0	0	13837	4974	13130	83669;83670	112988;112989	112988			2	
ESLTEAEVATEK	1	Unmodified	1305.63	0.62999092	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	1	3	39.187	33.565	2	9.7449E-10	29214	160511_QHF_FH_JSI9i_1	120.32	86.064			0.77102	0.75993	61.553	5	3	Median	NaN	NaN	NaN	0	0	Median	0.60975	0.70988	NaN	1	1	Median	0.77608	0.75993	NaN	1	0	Median	0.77102	0.83237	86.891	3	2	Median	121900000	57743000	64155000	0	0	0	2076800	1309700	767040	3785700	1543800	2241900	116040000	54889000	61147000	13838	1148	13131	83671;83672;83673;83674;83675;83676	112990;112991;112992;112993;112994	112992			5	
ESLTLLRK	1	Unmodified	958.58113	0.58113065	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		31.039	31.039	3	0.013996	26970	160511_QHF_FH_JSI11i_3	43.083	27.421			1.1038	1.0412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1038	1.0412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75668000	36452000	39216000	0	0	0	0	0	0	75668000	36452000	39216000	0	0	0	13839	3988	13132	83677	112995	112995			1	
ESLTPGREENPSSVLAQER	0	Unmodified	2098.0291	0.029074882	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			46.771	45.762	3	0.0001527	40335	160511_QHF_FH_JSI10i_2	62.203	42.531			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13840	806	13133	83678;83679	112996;112997	112997			2	
ESLVSFAMQHVR	0	Unmodified	1402.7027	0.70271913	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.86	4.55			6						1	2	3	2		73.112	71.075	2;3	1.3269E-08	37929	160513_QHF_FH_JSI10Kac_6	107.85	94.969			0.98195	0.90494	30.253	6	1	Median	1.058	0.87159	14.237	2	0	Median	1.0177	1.2005	44.215	3	1	Plateau	1.0952	1.026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	204030000	99337000	104690000	72328000	33483000	38845000	86309000	49576000	36733000	45389000	16278000	29111000	0	0	0	13841	3439	13134	83680;83681;83682;83683;83684;83685;83686	112998;112999;113000;113001;113002;113003;113004;113005;113006;113007	113007			10	
ESLVVNYEDLAAR	0	Unmodified	1477.7413	0.7412727	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.5	6.5	1						1			1	1			71.307	65.521	2	0.00057754	58896	160511_QHF_FH_JSI9i_1	104.79	89.223			1.1954	1.1829	25.3	2	2	Median	1.7097	1.4146	NaN	1	1	Median	0.83586	0.98913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117780000	42022000	75761000	113730000	39403000	74327000	4053600	2619300	1434300	0	0	0	0	0	0	13842	1674	13135	83687;83688	113008;113009	113009			2	
ESLVYFLIGK	1	Unmodified	1167.654	0.65396125	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.888	82.579	2	4.7782E-14	44148	160513_QHF_FH_JSI12Kac_6	156.75	126.68			0.85306	0.93109	14.282	4	1	Median	0.86583	0.72969	NaN	1	0	Median	0.84047	0.97884	NaN	1	0	Median	1.0573	0.99607	NaN	1	0	Median	0.83398	0.88567	NaN	1	1	Median	643090000	331480000	311610000	127540000	56669000	70871000	176030000	109080000	66953000	165110000	73930000	91179000	174410000	91802000	82606000	13843	1347	13136	83689;83690;83691;83692	113010;113011;113012;113013;113014;113015	113013			6	
ESLWPFLIDK	1	Unmodified	1246.6598	0.6597749	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	2	2	2	100.37	100.28	2	7.7619E-06	86429	160511_QHF_FH_JSI12i_2	116.3	42.374			0.9523	0.96371	19.309	8	1	Median	1.0455	0.88981	22.071	2	0	Median	0.74527	0.89048	42.558	2	0	Median	1.0324	0.99609	1.1581	2	0	Median	0.79596	0.87617	9.9519	2	1	Median	534950000	259500000	275460000	92944000	42560000	50385000	131850000	72718000	59135000	177230000	73620000	103610000	132930000	70598000	62329000	13844	5160	13137	83693;83694;83695;83696;83697;83698;83699;83700	113016;113017;113018;113019;113020;113021;113022;113023	113017			4	
ESLWPFLIDKR	1	Acetyl (K)	1444.7715	0.77145062	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.278	82.906	2	0.0026552	46635	160513_QHF_FH_JSI11Kac_6	79.201	53.765			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18615000	18615000	0	0	0	0	0	0	0	18615000	18615000	0	0	0	0	13845	5160	13138	83701	113024	113024	3327		1	
ESMAGNKPANAVLHK	2	Unmodified	1565.7984	0.79841043	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	19.735	19.231	3;4	3.2131E-05	15877	160511_QHF_FH_JSI10i_3	80.507	74.426			1.4712	1.3482	63.042	7	3	Median	1.6335	1.3482	NaN	1	0	Median	0.92718	1.0652	68.438	2	1	Median	1.2332	1.1638	54.281	2	1	Median	1.1091	1.1245	125.83	2	1	Median	1296800000	542750000	754040000	68752000	22790000	45963000	338000000	155440000	182550000	461900000	210610000	251290000	428150000	153910000	274230000	13846	2578	13139	83702;83703;83704;83705;83706;83707;83708	113025;113026;113027;113028;113029;113030	113027			6	
ESMATGSIPITVR	0	Unmodified	1360.7021	0.70205043	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.98	5	2	1				1			4	2	2	1	57.928	55.898	2	1.0786E-40	50691	160511_QHF_FH_JSI11i_1	198.62	156.43			1.0171	0.93579	20.462	9	5	Median	1.1554	0.94991	8.7676	4	3	Median	0.7664	0.92333	1.8954	2	2	Median	0.76187	0.74092	40.006	2	0	Median	1.0874	1.1683	NaN	1	0	Median	2062300000	1058200000	1004100000	716870000	324550000	392310000	453740000	261350000	192380000	493030000	265020000	228010000	398660000	207220000	191440000	13847	1674	13140	83709;83710;83711;83712;83713;83714;83715;83716;83717	113031;113032;113033;113034;113035;113036;113037;113038;113039;113040	113031			9	
ESMATGSIPITVR	0	Oxidation (M)	1376.697	0.69696505	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.408	44.918	2	0.0019612	40848	160511_QHF_FH_JSI12i_1	91.701	76.086			1.0112	0.78587	19.918	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.62614	0.7436	NaN	1	1	Median	1.032	0.99681	NaN	1	1	Median	1.0112	1.0876	NaN	1	1	Median	120550000	65246000	55302000	0	0	0	37403000	22625000	14778000	46036000	21855000	24181000	37110000	20767000	16343000	13848	1674	13140	83718;83719;83720	113041;113042;113043	113042		1363	3	
ESMLVEWEQVK	1	Unmodified	1376.6646	0.66460229	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	71.384	70.418	2	6.0955E-06	60731	160511_QHF_FH_JSI12i_2	114.4	103.65			0.99288	1.0689	9.9119	5	5	Median	1.2802	1.0895	NaN	1	1	Median	0.77536	0.95655	NaN	1	1	Median	0.99288	1.0049	NaN	1	1	Median	1.0487	1.1527	10.675	2	2	Median	511880000	259660000	252220000	83120000	32948000	50172000	100480000	55542000	44937000	166830000	86185000	80641000	161450000	84985000	76468000	13849	3503	13141	83721;83722;83723;83724;83725	113044;113045;113046;113047;113048	113045			5	
ESMQMQVEAER	0	Unmodified	1336.5751	0.57513535	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	29.893	29.351	2	6.8157E-06	26266	160511_QHF_FH_JSI12i_1	113.69	90.947			1.1682	1.2259	13.312	5	3	Median	1.6159	1.3348	NaN	1	0	Median	0.89125	1.0658	3.5459	2	2	Median	1.5326	1.4292	NaN	1	0	Median	1.1682	1.2259	NaN	1	1	Median	917750000	448380000	469380000	158140000	62269000	95869000	447570000	246390000	201180000	67558000	21095000	46464000	244490000	118620000	125870000	13850	5357	13142	83726;83727;83728;83729;83730	113049;113050;113051;113052;113053;113054	113050			6	
ESMQMQVEAER	0	Oxidation (M)	1352.57	0.57004997	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	2									1		1		30.113	29.366	2	0.0032239	25663	160511_QHF_FH_JSI9i_1	81.017	69.865			1.2928	1.138	33.038	2	2	Median	1.1209	0.90092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4912	1.4375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68855000	26946000	41909000	39447000	17128000	22319000	0	0	0	29407000	9817500	19590000	0	0	0	13851	5357	13142	83731;83732	113055;113056;113057	113057		2639;2640	3	
ESMQMQVEAER	0	2 Oxidation (M)	1368.565	0.5649646	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	2	0	By MS/MS				1	0	1									1				30.714	29.44	2	0.018352	25661	160511_QHF_FH_JSI9i_1	84.31	64.704			1.0765	0.86592	NaN	1	1	Median	1.0765	0.86592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41724000	13870000	27853000	41724000	13870000	27853000	0	0	0	0	0	0	0	0	0	13852	5357	13142	83733	113058	113058		2639;2640	1	
ESNANPIFMR	0	Unmodified	1177.555	0.55499226	4479	Q9BVM2	DPCD	Protein DPCD	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	42.013	41.05	2	8.8759E-05	35256	160511_QHF_FH_JSI11i_2	85.676	62.247			1.089	1.0298	13.176	3	1	Median	1.0976	0.91789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98513	1.0298	NaN	1	0	Median	1.089	1.1938	NaN	1	1	Median	86043000	44541000	41502000	26563000	12847000	13716000	0	0	0	37402000	20834000	16568000	22078000	10860000	11218000	13853	4479	13143	83734;83735;83736	113059;113060;113061;113062	113062			4	
ESNCYDPER	0	Unmodified	1168.4455	0.44550139	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	11.859	10.077	2	0.0007716	8384	160511_QHF_FH_JSI11i_1	74.424	65.561			0.89069	1.0172	11.486	5	0	Median	1.2745	1.0194	NaN	1	0	Median	0.87062	1.0172	NaN	1	0	Median	0.8706	0.84061	2.3618	2	0	Median	1.0182	1.0631	NaN	1	0	Median	293260000	158880000	134380000	40258000	21264000	18994000	91293000	45149000	46144000	85561000	55870000	29691000	76147000	36592000	39555000	13854	2155	13144	83737;83738;83739;83740;83741	113063;113064;113065;113066	113063			4	
ESNEEEQVWHFLGK	1	Unmodified	1730.79	0.79001381	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		76.678	75.963	3	0.00050982	66584	160511_QHF_FH_JSI11i_2	71.279	66.888			0.71544	0.72336	17.776	3	2	Median	0.71544	0.64662	NaN	1	1	Median	0.58388	0.72336	NaN	1	0	Median	0.88373	0.91598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	219660000	124220000	95439000	47770000	21545000	26225000	79795000	54527000	25268000	92094000	48148000	43946000	0	0	0	13855	4682	13145	83742;83743;83744	113067;113068;113069	113068			2	
ESNGPVK	1	Unmodified	729.36572	0.36571815	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.77	15	1	3			5				10	5	5	4	1.9606	0.11792	2	0.0015363	1116	160511_QHF_FH_JSI11i_1	119.57	82.979			1.2655	1.1272	36.824	19	4	Median	1.3022	1.0657	49.663	8	2	Median	1.0189	1.1822	31.053	5	0	Median	1.0826	1.0101	16.747	5	1	Median	1.6009	1.703	NaN	1	1	Median	5419100000	2519100000	2899900000	1586600000	824060000	762520000	1441100000	554280000	886840000	1477400000	712290000	765160000	913910000	428480000	485420000	13856	769	13146	83745;83746;83747;83748;83749;83750;83751;83752;83753;83754;83755;83756;83757;83758;83759;83760;83761;83762;83763;83764;83765;83766;83767;83768	113070;113071;113072;113073;113074;113075;113076;113077;113078;113079;113080;113081;113082;113083;113084;113085;113086;113087;113088;113089;113090;113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101;113102;113103	113071			34	
ESNGPVKVWGSIK	2	Acetyl (K)	1441.7565	0.75652884	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	70.92	60.259	2	0.05731	32637	160513_QHF_FH_JSI12Kac_4	48.741	39.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1367900	1367900	0	0	0	0	0	0	0	0	0	0	1367900	1367900	0	13857	769	13147	83769	113104	113104			1	
ESNLDRLNEQGNFK	1	Unmodified	1662.7962	0.79616182	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.41	35.283	3	0.058601	29941	160511_QHF_FH_JSI12i_3	30.483	16.13			0.44354	0.47342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44354	0.47342	NaN	1	1	Median	19002000	14177000	4824600	0	0	0	0	0	0	0	0	0	19002000	14177000	4824600	13858	3285	13148	83770	113105	113105			1	
ESNSIVKIFK	2	Acetyl (K)	1205.6656	0.66558856	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		75.081	64.277	2	4.4233E-07	34716	160513_QHF_FH_JSI11Kac_4	109.66	69.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4073100	4073100	0	0	0	0	0	0	0	4073100	4073100	0	0	0	0	13859	1438	13149	83771	113106	113106	1419		1	
ESNSLEISLIK	1	Unmodified	1231.666	0.66598249	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	64.605	63.761	2	6.1346E-06	58098	160511_QHF_FH_JSI12i_1	110.39	79.098			3.0569	2.7858	7.0061	2	0	Median	3.3081	2.6512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8248	2.9273	NaN	1	0	Median	74523000	21855000	52668000	26377000	9018500	17358000	0	0	0	0	0	0	48146000	12836000	35310000	13860	4225	13150	83772;83773	113107	113107			1	
ESNTDQGFFK	1	Unmodified	1171.5146	0.51456723	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	31.006	30.629	2	2.2417E-06	27316	160511_QHF_FH_JSI10i_1	111.61	85.223			1.4093	1.3528	27.31	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72637	0.85166	NaN	1	0	Median	1.5703	1.4701	NaN	1	0	Median	1.1125	1.1375	NaN	1	0	Median	197080000	100890000	96191000	0	0	0	58168000	39245000	18923000	70518000	29266000	41252000	68397000	32380000	36017000	13861	4851	13151	83774;83775;83776	113108;113109;113110;113111	113111			4	
ESNVLHEK	1	Unmodified	954.47706	0.47705951	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.229	7.786	2	0.013002	5515	160511_QHF_FH_JSI12i_2	58.433	34.91			0.75985	0.87906	64.03	4	3	Median	0.42795	0.37606	NaN	1	1	Median	0.59405	0.73277	NaN	1	1	Median	1.6801	1.7201	NaN	1	1	Median	0.97193	1.0546	NaN	1	0	Median	195700000	104920000	90779000	45918000	30974000	14944000	46780000	29043000	17738000	57737000	22651000	35085000	45263000	22251000	23013000	13862	5097	13152	83777;83778;83779;83780	113112;113113;113114;113115	113112			4	
ESNVQEVR	0	Unmodified	959.46722	0.46722311	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	8.6616	5.3515	2	1.3188E-05	5481	160511_QHF_FH_JSI11i_1	140.14	90.013			0.97258	0.98276	5.0512	7	0	Median	1.1682	0.962	NaN	1	0	Median	0.82204	0.97399	2.5462	2	0	Median	0.98222	0.96479	2.6098	2	0	Median	0.98687	1.0677	0.91582	2	0	Median	3096900000	1619700000	1477200000	727170000	361040000	366130000	781790000	436710000	345070000	783140000	415530000	367610000	804850000	406430000	398410000	13863	2014;2065	13153	83781;83782;83783;83784;83785;83786;83787	113116;113117;113118;113119;113120;113121;113122;113123;113124;113125;113126;113127;113128	113117			13	
ESPAHPEADGAPK	1	Unmodified	1304.5997	0.59969384	2182	Q02040	AKAP17A	A-kinase anchor protein 17A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.21	9.839	3	0.012784	7692	160511_QHF_FH_JSI12i_1	43.03	28.344			1.1011	1.1444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1011	1.1444	NaN	1	1	Median	74866000	41695000	33170000	0	0	0	0	0	0	0	0	0	74866000	41695000	33170000	13864	2182	13154	83788	113129	113129			1	
ESPEGSYTDDANQEVR	0	Unmodified	1795.7497	0.74966514	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.347	26.767	2	2.6912E-10	23788	160511_QHF_FH_JSI12i_1	147.87	142.97			0.7871	0.88272	22.971	4	0	Linear	1.6131	1.3647	NaN	1	0	Median	0.68309	0.8124	NaN	1	0	Median	1.2232	1.165	NaN	1	0	Median	0.88017	0.93706	NaN	1	0	Median	157860000	70559000	87302000	29947000	9445100	20502000	44948000	21400000	23548000	38166000	15907000	22259000	44800000	23807000	20993000	13865	2934	13155	83789;83790;83791;83792	113130;113131;113132;113133;113134;113135;113136;113137	113132			8	
ESPEIEPLPFTLAHER	0	Unmodified	1863.9367	0.93667805	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.78	75.536	3	0.013257	65368	160511_QHF_FH_JSI12i_2	30.974	25.656			0.83939	0.92764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83939	0.92764	NaN	1	1	Median	20766000	11814000	8952900	0	0	0	0	0	0	0	0	0	20766000	11814000	8952900	13866	4936	13156	83793	113138	113138			1	
ESPESEGPIYEGLIL	0	Unmodified	1631.793	0.7930335	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	100.45	100.33	2	9.665E-05	90908	160511_QHF_FH_JSI12i_1	106.2	101.3			1.2449	1.1485	11.104	4	1	Median	1.2358	1.0118	NaN	1	0	Median	0.92664	1.0746	NaN	1	0	Median	1.2585	1.2275	NaN	1	1	Median	1.254	1.2824	NaN	1	0	Median	293790000	145410000	148380000	43195000	17889000	25306000	102880000	54674000	48210000	90373000	39346000	51027000	57338000	33504000	23835000	13867	4212	13157	83794;83795;83796;83797;83798	113139;113140;113141;113142;113143;113144	113140			6	
ESPFSTSASPLLSGSQHFDVPPR	0	Unmodified	2442.1816	0.18155278	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.074	79.074	3	0.031328	70598	160511_QHF_FH_JSI11i_3	25.803	21.535			1.1789	1.1235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1789	1.1235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36702000	22681000	14021000	0	0	0	0	0	0	36702000	22681000	14021000	0	0	0	13868	231	13158	83799	113145	113145			1	
ESPFSTSASPLLSGSQHFDVPPRR	0	Unmodified	2598.2827	0.28266381	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				72.334	70.857	4	0.057994	58268	160511_QHF_FH_JSI9i_3	12.314	9.0993			1.2358	1.0349	NaN	1	1	Median	1.2358	1.0349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12439000	4220900	8217800	12439000	4220900	8217800	0	0	0	0	0	0	0	0	0	13869	231	13159	83800	113146	113146			1	
ESPGAAATSSSGPQAQQHR	0	Unmodified	1865.8616	0.86161562	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.83	2	4	2				1			1	2	3	3	10.777	9.6523	3	2.7819E-11	7439	160511_QHF_FH_JSI12i_2	136.26	123.16			1.0617	1.0138	20.995	9	3	Median	1.4069	1.1962	NaN	1	1	Median	0.73087	0.87145	14.863	2	1	Median	1.0845	1.0138	26.365	3	0	Median	1.0617	1.1348	17.66	3	1	Median	265950000	130280000	135670000	28975000	10402000	18573000	89802000	52818000	36983000	87082000	38688000	48394000	60091000	28372000	31719000	13870	3223	13160	83801;83802;83803;83804;83805;83806;83807;83808;83809	113147;113148;113149;113150;113151;113152;113153;113154	113149			8	
ESPLHPAR	0	Unmodified	905.47191	0.47191456	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	9.0383	8.8293	2;3	0.0016333	6449	160511_QHF_FH_JSI11i_3	86.872	64.25			0.99149	1.0069	2.5196	8	0	Median	1.1729	0.98469	NaN	1	0	Median	0.81668	0.99028	NaN	1	0	Median	1.1068	1.06	2.7351	3	0	Plateau	1.0019	1.0215	1.5509	3	0	Plateau	1621400000	788320000	833070000	74960000	36977000	37984000	115980000	62682000	53298000	748110000	345630000	402480000	682340000	343040000	339300000	13871	950	13161	83810;83811;83812;83813;83814;83815;83816;83817	113155;113156;113157;113158;113159;113160;113161;113162;113163	113156			9	
ESPLLFK	1	Unmodified	832.46945	0.46945494	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.89	4	3	4				2	3		4	4	5	3	52.159	48.246	2	0.0077995	42851	160511_QHF_FH_JSI9i_1	86.086	10.776			1.1451	1.2124	13.815	16	3	Median	1.5742	1.2977	18.232	4	1	Median	1.006	1.2258	12.222	4	1	Median	0.9678	1.0705	12.061	5	1	Linear	1.1305	1.2486	11.385	3	0	Median	6157500000	3089400000	3068100000	1409800000	600620000	809140000	1757800000	983720000	774040000	2442100000	1233500000	1208700000	547880000	271580000	276300000	13872	1270	13162	83818;83819;83820;83821;83822;83823;83824;83825;83826;83827;83828;83829;83830;83831;83832;83833	113164;113165;113166;113167;113168;113169;113170;113171;113172;113173;113174;113175;113176;113177;113178;113179;113180	113174			17	
ESPLLFKFR	1	Acetyl (K)	1177.6495	0.64954457	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		83.705	73.246	2	0.0088029	36361	160513_QHF_FH_JSI10Kac_5	63.565	49.986			0.54963	0.59049	78.904	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87971	1.0316	NaN	1	0	Median	0.3434	0.33799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7411200	4913300	2497900	0	0	0	2611100	1334600	1276400	4800200	3578700	1221500	0	0	0	13873	1270	13163	83834;83835	113181;113182	113182	1172		2	
ESPSGTMK	1	Unmodified	835.37457	0.37456828	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.8822	6.5464	2	0.0007303	4473	160511_QHF_FH_JSI12i_1	98.997	31.962			0.81876	0.86831	16.115	4	0	Median	1.2827	1.0251	NaN	1	0	Median	0.65995	0.79254	NaN	1	0	Median	0.74331	0.7226	NaN	1	0	Median	0.90187	0.95133	NaN	1	0	Median	1058100000	601910000	456170000	250250000	120040000	130210000	292610000	181370000	111240000	267540000	160670000	106870000	247680000	139830000	107850000	13874	1040	13164	83836;83837;83838;83839	113183;113184;113185;113186;113187;113188	113185			6	
ESPVEFTGHK	1	Unmodified	1129.5404	0.54038805	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	23.83	22.71	2	0.0019523	18918	160511_QHF_FH_JSI12i_2	66.568	45.104			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13875	2930	13165	83840;83841	113189;113190	113189			2	
ESPVFAPVYFPEELHRK	1	Unmodified	2044.0418	0.04181182	934	P09601	HMOX1	Heme oxygenase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.224	72.93	3	0.013344	63292	160511_QHF_FH_JSI12i_3	39.849	30.443			0.80612	0.83307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80612	0.83307	NaN	1	1	Median	14849000	8274900	6574100	0	0	0	0	0	0	0	0	0	14849000	8274900	6574100	13876	934	13166	83842	113191	113191			1	
ESQDTSFTTLVER	0	Unmodified	1511.7104	0.71036651	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	58.329	54.314	2	5.4937E-31	48965	160511_QHF_FH_JSI11i_1	193.73	165.72			1.0317	1.0783	8.988	8	2	Median	1.4319	1.155	7.4828	2	2	Median	0.79967	0.95671	4.0442	2	0	Median	1.0713	1.0266	8.9359	2	0	Median	1.0317	1.0942	4.0539	2	0	Median	1495100000	689140000	805920000	526940000	189940000	336990000	275300000	159300000	116010000	375980000	191020000	184970000	316840000	148880000	167950000	13877	2242	13167	83843;83844;83845;83846;83847;83848;83849;83850	113192;113193;113194;113195;113196;113197;113198;113199;113200;113201;113202	113193			11	
ESQKDRK	2	Unmodified	889.46174	0.4617438	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By matching	By matching	1.71	0.7	3	3	1							1	2	2	2	104	103.94	1	0.051184	91723	160511_QHF_FH_JSI9i_2	20.282	2.2465			1.2467	1.3326	19.074	7	0	Median	1.478	1.2959	NaN	1	0	Median	1.1859	1.4342	10.388	2	0	Median	1.3849	1.391	4.2246	2	0	Median	0.92316	0.95649	2.3514	2	0	Median	743400000	317690000	425710000	126060000	49049000	77015000	223760000	101430000	122340000	279820000	113400000	166410000	113760000	53810000	59947000	13878	3609	13168	83851;83852;83853;83854;83855;83856;83857	113203;113204	113203			2	
ESQLAHIK	1	Unmodified	924.50288	0.50288033	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	13.086	12.517	2	0.00022176	9730	160511_QHF_FH_JSI11i_2	118.74	88.131			1.679	1.4702	54.91	5	4	Median	1.6882	1.4702	NaN	1	1	Median	0.94892	1.1638	83.397	2	2	Median	1.0777	1.0771	NaN	1	0	Median	2.3608	2.5748	NaN	1	1	Median	197810000	102180000	95630000	24320000	9369500	14950000	83845000	49714000	34132000	67013000	36150000	30863000	22637000	6951700	15685000	13879	3290	13169	83858;83859;83860;83861;83862	113205;113206;113207;113208;113209	113207			5	
ESQLFDPSDLQDTSNR	0	Unmodified	1850.8282	0.82824981	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				62.153	61.066	2	7.5291E-05	54224	160511_QHF_FH_JSI9i_1	89.013	66.095			0.911	0.78046	NaN	1	0	Median	0.911	0.78046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37417000	16367000	21050000	37417000	16367000	21050000	0	0	0	0	0	0	0	0	0	13880	5463	13170	83863	113210	113210			1	
ESQLFDPSDLQDTSNRVTVK	1	Unmodified	2278.1077	0.10771913	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	66.939	66.316	3	0.00089174	60416	160511_QHF_FH_JSI12i_1	49.973	37.31			1.9554	2.1056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9554	2.1056	NaN	1	1	Median	36938000	13571000	23368000	0	0	0	0	0	0	0	0	0	36938000	13571000	23368000	13881	5463	13171	83864	113211	113211			1	
ESQQQHGLR	0	Unmodified	1081.5265	0.52646932	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	4.6983	4.5751	2;3	1.5016E-11	2430	160511_QHF_FH_JSI10i_2	163.99	134.84			1.0025	1.0473	15.249	5	0	Median	1.2775	1.1152	NaN	1	0	Median	0.92223	1.1233	NaN	1	0	Median	0.83031	0.77492	NaN	1	0	Median	1.0101	1.0385	1.1944	2	0	Median	780760000	369680000	411080000	98485000	48453000	50033000	126810000	60926000	65886000	159590000	77429000	82156000	395870000	182870000	213000000	13882	5295	13172	83865;83866;83867;83868;83869;83870	113212;113213;113214;113215;113216	113214			5	
ESQSHPGDFVLSVR	0	Unmodified	1556.7583	0.75831975	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.58	4.68		5	5					2		1	2	6	3	48.689	46.191	2;3	1.6383E-07	39321	160511_QHF_FH_JSI12i_3	96.229	73.588			1.1552	1.2064	31.507	10	4	Median	1.6148	1.3545	NaN	1	0	Median	1.0157	1.2116	18.241	2	0	Median	1.136	1.1309	44.851	5	3	Median	1.1228	1.1479	16.164	2	1	Median	506120000	251310000	254800000	69724000	26286000	43438000	74875000	38593000	36282000	231240000	123700000	107540000	130280000	62737000	67545000	13883	2239	13173	83871;83872;83873;83874;83875;83876;83877;83878;83879;83880;83881;83882	113217;113218;113219;113220;113221;113222;113223;113224;113225;113226;113227;113228	113228			12	
ESQSPDTTIQR	0	Unmodified	1260.5946	0.59460847	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.74	5				3	3				2	4	2	3	15.866	11.998	2	1.5677E-23	10532	160511_QHF_FH_JSI10i_1	179.8	127.09			1.028	1.0217	7.5042	10	6	Median	1.2307	0.99729	7.9463	2	2	Median	0.78891	0.91641	5.7673	3	1	Median	1.0581	1.0436	0.25503	2	1	Median	0.90428	0.95528	8.7341	3	2	Plateau	2266600000	1076600000	1190000000	815600000	363030000	452570000	530320000	279050000	251270000	470550000	212050000	258500000	450140000	222450000	227690000	13884	3914	13174	83883;83884;83885;83886;83887;83888;83889;83890;83891;83892;83893	113229;113230;113231;113232;113233;113234;113235;113236;113237;113238;113239;113240;113241;113242;113243	113235			15	
ESQSVEEALK	1	Unmodified	1118.5455	0.54553301	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	25.059	24.367	2	5.5995E-14	20830	160511_QHF_FH_JSI9i_1	157.96	106.99			0.82812	0.9718	24.919	3	0	Median	1.55	1.2718	NaN	1	0	Median	0.82812	0.9718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7219	0.77304	NaN	1	0	Median	831290000	500460000	330830000	313960000	195680000	118280000	252200000	145040000	107160000	0	0	0	265130000	159740000	105390000	13885	1693	13175	83894;83895;83896	113244;113245;113246;113247;113248;113249	113248			6	
ESQSVEEALKK	2	Acetyl (K)	1288.6511	0.65106071	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		44.573	35.316	2	0.031029	19897	160513_QHF_FH_JSI11Kac_3	57.532	39.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1710400	1710400	0	0	0	0	0	0	0	1710400	1710400	0	0	0	0	13886	1693	13176	83897	113250	113250			1	
ESQTQDNITVR	0	Unmodified	1289.6212	0.62115757	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	19.014	15.598	2	7.7295E-30	13271	160511_QHF_FH_JSI10i_1	192.38	129.83			0.92771	0.8901	15.475	7	2	Median	1.0468	0.86297	NaN	1	0	Median	0.90494	1.0338	21.005	2	0	Median	0.90843	0.87227	2.8604	2	0	Median	0.95944	1.018	22.653	2	2	Median	736940000	387350000	349590000	218230000	101090000	117140000	208440000	112270000	96163000	155740000	89015000	66726000	154530000	84975000	69556000	13887	3904	13177	83898;83899;83900;83901;83902;83903;83904	113251;113252;113253;113254;113255;113256;113257;113258;113259;113260	113257			10	
ESRPAEVPAEGLVNGAGAPGGGGVR	0	Unmodified	2303.1618	0.16182039	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	2	1		50.502	49.503	3	7.348E-08	43708	160511_QHF_FH_JSI10i_2	70.699	63.427			0.58509	0.60813	12.553	2	2	Median	0.63895	0.55648	NaN	1	1	Median	0.53577	0.66458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46090000	33622000	12468000	24312000	17777000	6535400	21778000	15845000	5932300	0	0	0	0	0	0	13888	3517	13178	83905;83906;83907;83908;83909	113261;113262;113263;113264;113265;113266;113267	113266			7	
ESRPGLVTVTSSQSTPAK	1	Unmodified	1843.964	0.96395543	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		10	6.13		1	1					3		2	2	1		36.569	30.139	3	6.6704E-05	26197	160511_QHF_FH_JSI9i_2	87.24	76.385			1.0758	0.90477	76.356	5	3	Median	0.99176	0.82987	12.222	2	1	Median	1.8042	2.0879	121.04	2	1	Median	1.3643	1.3564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	220490000	51880000	168610000	53094000	26544000	26550000	162830000	23332000	139500000	4559200	2003800	2555400	0	0	0	13889	5154	13179	83910;83911;83912;83913;83914	113268;113269;113270;113271;113272	113270			5	
ESRPPDFISISASK	1	Unmodified	1532.7835	0.78347187	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	50.904	50.786	3	5.9611E-05	43508	160511_QHF_FH_JSI12i_3	79.652	68.069			1.3364	1.3116	3.7927	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3641	1.2769	NaN	1	0	Median	1.3093	1.3473	NaN	1	0	Median	85805000	41298000	44508000	0	0	0	0	0	0	35663000	20332000	15331000	50143000	20966000	29177000	13890	3816	13180	83915;83916	113273;113274	113273			2	
ESRQEEMNSQQEEEEMETDAR	0	Unmodified	2584.029	0.02895282	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	2		1	29.567	28.96	3	6.7128E-18	25823	160511_QHF_FH_JSI10i_1	146.89	146.89			0.97703	1.1041	21.057	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.77203	0.92339	29.556	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94937	0.96543	NaN	1	1	Median	177380000	99640000	77745000	0	0	0	90305000	50861000	39445000	0	0	0	87079000	48779000	38300000	13891	2412	13181	83917;83918;83919;83920	113275;113276;113277;113278;113279	113277			5	
ESRYEEEEEQSR	0	Unmodified	1569.6543	0.65430819	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		6								2	2	2		8.9281	8.5455	2;3	0.00018904	6392	160511_QHF_FH_JSI10i_2	70.438	67.945			1.0956	1.1078	10.107	6	0	Median	1.1159	0.9458	2.633	2	0	Median	0.91719	1.1366	1.2648	2	0	Median	1.1426	1.1409	6.519	2	0	Median	NaN	NaN	NaN	0	0	Median	219050000	107060000	111990000	74328000	35912000	38416000	76661000	34766000	41895000	68060000	36384000	31676000	0	0	0	13892	5658	13182	83921;83922;83923;83924;83925;83926	113280;113281;113282;113283;113284;113285	113285			6	
ESSANNSVSPSESLR	0	Unmodified	1562.7172	0.7172428	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									1	2	2		21.506	21.306	2	3.0096E-21	18336	160511_QHF_FH_JSI11i_1	168.02	138.27			0.81474	0.85104	9.7756	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69827	0.7942	NaN	1	1	Median	0.95064	0.91195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55965000	34255000	21709000	0	0	0	24247000	14445000	9801500	31718000	19810000	11908000	0	0	0	13893	2220	13183	83927;83928;83929;83930;83931	113286;113287;113288;113289;113290	113287			5	
ESSATDEAWR	0	Unmodified	1150.4891	0.48908076	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	18.525	18.162	2	0.0036224	15698	160511_QHF_FH_JSI12i_1	83.456	53.682			1.0805	1.1809	12.062	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1073	1.2861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0544	1.0844	NaN	1	0	Median	140440000	68014000	72430000	0	0	0	69873000	33592000	36282000	0	0	0	70571000	34422000	36148000	13894	2303	13184	83932;83933	113291;113292	113291			1	
ESSEAQVQK	1	Unmodified	1004.4775	0.47745344	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	2	3	3	6.0908	1.9347	2	1.9898E-17	3438	160511_QHF_FH_JSI10i_1	182.73	121.76			0.9985	0.99672	16.184	9	0	Median	1.3685	1.1183	NaN	1	0	Median	0.80476	0.94934	15.755	2	0	Median	0.9985	0.92059	5.3164	3	0	Median	1.018	1.0524	21.417	3	0	Median	796610000	435020000	361590000	127550000	60615000	66938000	227070000	138460000	88616000	240960000	133800000	107150000	201030000	102150000	98886000	13895	5646	13185	83934;83935;83936;83937;83938;83939;83940;83941;83942	113293;113294;113295;113296;113297;113298;113299;113300	113297			8	
ESSEEEYDSGVEEEGWPR	0	Unmodified	2112.8396	0.83960236	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	51.032	50.533	2	2.8371E-32	45797	160511_QHF_FH_JSI11i_1	147.18	137.65			0.84525	0.97219	19.245	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.83954	0.97219	NaN	1	0	Median	1.4396	1.3945	NaN	1	1	Median	1.0329	1.0367	NaN	1	0	Median	85253000	38799000	46454000	0	0	0	39079000	19774000	19306000	18639000	4092500	14546000	27535000	14933000	12602000	13896	598	13186	83943;83944;83945;83946	113301;113302;113303;113304;113305;113306;113307	113302			7	
ESSETPDQFMTADETR	0	Oxidation (M)	1858.7527	0.7527016	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.72	5				2	2				2	2	2	3	34.678	30.001	2	2.7273E-27	39696	160511_QHF_FH_JSI9i_1	148.68	142.02			1.0722	1.1139	9.1585	8	0	Median	1.1437	0.98553	NaN	1	0	Median	0.90812	1.0253	10.486	2	0	Median	1.2691	1.2254	0.326	2	0	Median	1.0714	1.1421	3.2065	3	0	Plateau	205140000	96649000	108490000	37085000	14653000	22432000	50322000	28838000	21483000	50669000	24642000	26027000	67066000	28515000	38551000	13897	1089	13187	83947;83948;83949;83950;83951;83952;83953;83954;83955	113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321	113318		735	14	
ESSETPDQFMTADETR	0	Unmodified	1842.7578	0.75778698	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				1	3	3	2	49.56	44.542	2	2.1991E-235	39778	160511_QHF_FH_JSI9i_1	350.96	347.85			1.0506	1.0059	10.049	8	1	Median	1.2475	1.0175	NaN	1	0	Median	0.82401	0.9898	3.445	3	1	Plateau	1.0815	1.0434	6.8073	2	0	Median	1.116	1.1872	9.5403	2	0	Median	2298000000	1120700000	1177400000	438940000	196870000	242080000	692810000	379060000	313750000	632800000	291380000	341410000	533470000	253350000	280120000	13898	1089	13187	83956;83957;83958;83959;83960;83961;83962;83963;83964	113322;113323;113324;113325;113326;113327;113328;113329;113330;113331;113332;113333;113334;113335;113336;113337;113338;113339	113336			18	
ESSETPDQFMTADETRNLQNVDMK	1	Unmodified	2785.2171	0.21708794	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	65.919	65.236	3	8.9588E-09	59057	160511_QHF_FH_JSI10i_1	78.987	72.338			1.2722	1.2272	40.329	2	1	Median	1.9972	1.6321	NaN	1	1	Median	0.81042	0.92271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39944000	17376000	22568000	18037000	5571700	12465000	21907000	11804000	10103000	0	0	0	0	0	0	13899	1089	13188	83965;83966;83967	113340;113341;113342	113341			3	
ESSEYLK	1	Unmodified	854.40216	0.40216323	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.27	12.857	2	0.049097	10656	160511_QHF_FH_JSI12i_1	47.849	30.922			1.1218	1.1865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1218	1.1865	NaN	1	1	Median	210460000	73756000	136700000	0	0	0	0	0	0	0	0	0	210460000	73756000	136700000	13900	485	13189	83968	113343	113343			1	
ESSGEIEAAPVTGTGR	0	Unmodified	1559.7427	0.74272927	3034	Q6AI08	HEATR6	HEAT repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.386	30.056	2	0.0064235	26769	160511_QHF_FH_JSI10i_1	50.914	34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13901	3034	13190	83969	113344	113344			1	
ESSIIGVTLFSSTK	1	Unmodified	1467.7821	0.78207489	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	83.178	82.398	2	0.00020781	71147	160511_QHF_FH_JSI12i_2	107.09	90.063			1.338	1.4913	29.127	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73953	0.84763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2664	1.377	11.279	2	2	Median	69251000	30846000	38405000	0	0	0	14011000	6808600	7202600	0	0	0	55240000	24038000	31202000	13902	2266	13191	83970;83971;83972	113345;113346;113347	113345			3	
ESSLDGLGGTGK	1	Unmodified	1119.5408	0.54078198	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	27.579	27.268	2	0.00073594	24095	160511_QHF_FH_JSI10i_1	79.07	54.551			1.0465	1.2074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0465	1.2074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84883000	26459000	58424000	0	0	0	84883000	26459000	58424000	0	0	0	0	0	0	13903	3760	13192	83973;83974	113348;113349	113349			2	
ESSLILAVTPANMDLANSDALK	1	Unmodified	2272.1621	0.16206289	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	5										2	1	2	100.3	100.21	2;3	2.8986E-15	90915	160511_QHF_FH_JSI12i_1	171.91	162.86			0.83682	0.83387	14.367	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82202	0.94347	17.464	2	0	Median	0.83682	0.7978	NaN	1	0	Median	0.86756	0.90403	18.195	2	0	Median	169410000	80277000	89137000	0	0	0	71878000	35533000	36346000	39028000	18949000	20078000	58508000	25795000	32713000	13904	1711	13193	83975;83976;83977;83978;83979	113350;113351;113352	113350			2	
ESSLTEPVIVGLLK	1	Unmodified	1483.8498	0.84976052	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.634	7	5	1							3	4	3	3	94.503	94.136	2;3	6.0694E-30	81339	160511_QHF_FH_JSI12i_2	190.86	180.49			0.85791	0.88228	18.19	13	7	Median	1.0898	0.98532	29.219	3	2	Plateau	0.72055	0.86644	14.604	4	2	Median	0.85177	0.837	14.813	3	1	Median	0.93285	0.98858	4.2138	3	2	Median	536790000	289390000	247400000	73045000	37247000	35798000	179170000	98310000	80860000	153160000	84934000	68226000	131420000	68902000	62516000	13905	2570	13194	83980;83981;83982;83983;83984;83985;83986;83987;83988;83989;83990;83991;83992	113353;113354;113355;113356;113357;113358;113359;113360;113361;113362;113363;113364;113365;113366;113367;113368;113369;113370;113371;113372	113355			20	
ESSNSVSNHQLSGFDQAR	0	Unmodified	1961.8827	0.882745	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	3	3	29.232	28.615	3	3.5748E-06	24943	160511_QHF_FH_JSI10i_2	84.035	75.645			1.0979	1.0996	24.363	6	3	Median	1.8803	1.5907	NaN	1	1	Median	0.63417	0.78366	NaN	1	1	Median	1.1126	1.079	20.244	2	1	Median	1.0932	1.0996	6.3302	2	0	Median	193650000	91545000	102110000	39543000	6677700	32865000	30937000	21190000	9747500	50978000	29529000	21449000	72194000	34149000	38045000	13906	5610	13195	83993;83994;83995;83996;83997;83998;83999;84000;84001	113373;113374;113375;113376;113377;113378;113379;113380;113381;113382	113379			10	
ESSPSHPTR	0	Unmodified	996.46247	0.46247208	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	4.6496	4.0784	2	0.0035474	2039	160511_QHF_FH_JSI12i_2	70.256	45.362			4.4099	4.8846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4099	4.8846	NaN	1	1	Median	103310000	19793000	83521000	0	0	0	0	0	0	0	0	0	103310000	19793000	83521000	13907	2358	13196	84002	113383	113383			1	
ESSQPDAFSSGGGSK	1	Unmodified	1439.6165	0.61646612	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				15.919	14.9	2	0.0053068	12174	160511_QHF_FH_JSI9i_1	62.162	48.044			2.6267	2.1456	NaN	1	1	Median	2.6267	2.1456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34385000	8317100	26068000	34385000	8317100	26068000	0	0	0	0	0	0	0	0	0	13908	1443	13197	84003	113384	113384			1	
ESSSEQYVPDVFYK	1	Unmodified	1676.757	0.75698235	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	67.287	66.559	2	1.2197E-34	60487	160511_QHF_FH_JSI11i_1	245.58	210.89			1.1352	1.0894	12.794	5	5	Median	1.1557	0.94336	9.3057	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1352	1.1289	NaN	1	1	Median	1.1177	1.1629	9.2409	2	2	Median	598810000	272320000	326490000	263300000	111730000	151570000	0	0	0	130470000	69024000	61450000	205030000	91566000	113470000	13909	3686	13198	84004;84005;84006;84007;84008	113385;113386;113387;113388;113389	113385			5	
ESSSESFISR	0	Unmodified	1127.5095	0.50948185	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.915	22.708	2	0.00027832	19710	160511_QHF_FH_JSI11i_1	79.489	63.827			0.80865	0.85747	12.492	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6791	0.78498	NaN	1	0	Median	0.96291	0.93666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171530000	97167000	74367000	0	0	0	84527000	47212000	37316000	87006000	49956000	37051000	0	0	0	13910	5222	13199	84009;84010	113390;113391	113390			2	
ESSSIYISK	1	Unmodified	1012.5077	0.50769094	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0			By MS/MS		13.5	0.5						1	1					2		32.216	23.263	2	0.058404	14182	160513_QHF_FH_JSI11Kac_3	35.541	15.755			0.8828	0.86891	18.582	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8828	0.86891	18.582	2	0	Median	NaN	NaN	NaN	0	0	Median	20894000	10486000	10408000	0	0	0	0	0	0	20894000	10486000	10408000	0	0	0	13911	440	13200	84011;84012	113392	113392			1	
ESSSPLSSNQSEPGSIALNSYHSR	0	Unmodified	2533.1681	0.16808756	1070	P15260	IFNGR1	Interferon gamma receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	1	1	2	59.725	49.001	3	0.00014028	26754	160513_QHF_FH_JSI11Kac_5	61.524	59.116			1.1623	1.0997	9.3811	4	0	Median	1.2269	1.0432	NaN	1	0	Median	0.89772	1.0496	NaN	1	0	Median	1.1771	1.1522	NaN	1	0	Median	1.1476	1.2732	NaN	1	0	Median	39075000	18830000	20246000	6759100	3446900	3312200	12533000	6658700	5874600	12527000	5487900	7038700	7256200	3236200	4020100	13912	1070	13201	84013;84014;84015;84016;84017	113393;113394;113395;113396;113397;113398;113399;113400;113401	113397			9	
ESSTESSQSAKPVSGQDTSGNTEGSPAAEK	2	Unmodified	2952.3068	0.30682546	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.465	15.992	3	1.7543E-51	13256	160511_QHF_FH_JSI9i_1	182.54	176.82			1.1195	1.0403	28.239	4	0	Median	1.4272	1.1642	NaN	1	0	Median	0.7807	0.92947	NaN	1	0	Median	0.87821	0.83635	NaN	1	0	Median	1.5117	1.5834	NaN	1	0	Median	201100000	94866000	106240000	52391000	21698000	30693000	55107000	32416000	22690000	51420000	21736000	29684000	42186000	19016000	23170000	13913	4237	13202	84018;84019;84020;84021	113402;113403;113404;113405;113406;113407;113408;113409;113410	113409			9	
ESSTVFELK	1	Unmodified	1038.5233	0.523341	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.21	4	5	1				3			3	3	4	3	47.316	44.18	2	1.2039E-16	25612	160513_QHF_FH_JSI11Kac_4	169.12	131.56			1.1018	1.0913	13.504	13	4	Median	1.4616	1.1962	11.371	3	1	Median	0.88931	1.0594	14.537	3	1	Median	1.0882	1.0679	18.15	4	2	Median	1.0267	1.0913	10.92	3	0	Median	5002100000	2480300000	2521800000	976850000	458050000	518800000	1343200000	723760000	619480000	1454000000	687290000	766740000	1228000000	611230000	616750000	13914	2659	13203	84022;84023;84024;84025;84026;84027;84028;84029;84030;84031;84032;84033;84034	113411;113412;113413;113414;113415;113416;113417;113418;113419;113420;113421;113422;113423;113424;113425	113419			15	
ESSVKTVR	1	Acetyl (K)	946.50836	0.50835964	717	O95696	BRD1	Bromodomain-containing protein 1	yes	yes	1	0	0	1	By MS/MS				13	0						1				1				17.506	-0.30552	2	0.0020281	5311	160513_QHF_FH_JSI9Kac_3	100.02	30.819			1.014	0.82262	NaN	1	0	Median	1.014	0.82262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119930000	62086000	57844000	119930000	62086000	57844000	0	0	0	0	0	0	0	0	0	13915	717	13204	84035	113426	113426	351		1	
ESSVVKNVVDSSQKPTPSAR	2	Acetyl (K)	2156.1073	0.1073252	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	1	0	0	2		By MS/MS			14	0							1				1			54.638	44.056	3	0.0036696	24493	160513_QHF_FH_JSI10Kac_4	74.364	59.594			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5386800	5386800	0	0	0	0	5386800	5386800	0	0	0	0	0	0	0	13916	2204	13205	84036	113427	113427	2325		1	
ESTAEKDEL	1	Unmodified	1020.4611	0.46113468	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.022	12.599	2	0.0030929	10351	160511_QHF_FH_JSI12i_1	80.438	62.453			1.0064	1.0363	11.537	4	0	Median	1.0553	0.84514	NaN	1	0	Median	0.94422	1.0985	NaN	1	0	Median	1.0756	1.0482	NaN	1	0	Median	0.95974	1.0245	NaN	1	0	Median	5319600000	2621700000	2697800000	1247000000	621000000	625950000	1411800000	685730000	726090000	1276000000	612570000	663440000	1384800000	702400000	682370000	13917	1057	13206	84037;84038;84039;84040	113428;113429	113428			2	
ESTAEKDEL	1	Acetyl (K)	1062.4717	0.47169936	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	1	0	0	1				By MS/MS	11	0				1									1	38.404	29.693	2	0.051151	12566	160513_QHF_FH_JSI12Kacf_1	50.607	40.62			0.24693	0.24941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24693	0.24941	NaN	1	1	Median	1098000	936460	161540	0	0	0	0	0	0	0	0	0	1098000	936460	161540	13918	1057	13206	84041	113430	113430			1	
ESTEFLQQNPVTEYMK	1	Unmodified	1942.8982	0.89824363	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	80.49	79.976	2;3	1.5098E-97	72583	160511_QHF_FH_JSI10i_1	256.52	226.32			1.0483	0.96254	14.329	6	1	Median	1.283	1.0481	19.636	2	1	Median	0.73055	0.85275	NaN	1	0	Median	0.96279	0.91443	16.37	2	0	Median	0.99749	1.0156	NaN	1	0	Median	295650000	164800000	130850000	81866000	41661000	40205000	56740000	33585000	23155000	101340000	58219000	43121000	55704000	31334000	24370000	13919	2453	13207	84042;84043;84044;84045;84046;84047;84048	113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442;113443;113444;113445	113439			15	
ESTESSNTTIEDEDVK	1	Unmodified	1782.7643	0.76431215	2440	Q13557	CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	23.852	23.244	2	1.2588E-35	20416	160511_QHF_FH_JSI10i_1	166.48	152.22			0.83171	0.76879	33.509	4	3	Median	0.80369	0.6571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56535	0.55627	NaN	1	0	Median	1.0038	1.0315	19.375	2	2	Median	80597000	46122000	34475000	15063000	8479800	6583500	0	0	0	27481000	17717000	9763500	38053000	19925000	18128000	13920	2440	13208	84049;84050;84051;84052;84053	113446;113447;113448;113449;113450;113451	113450			6	
ESTFLHLSALWLK	1	Unmodified	1543.8399	0.83986454	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	88.708	79.668	3	5.5701E-13	42835	160513_QHF_FH_JSI12Kac_6	126.1	103.78			0.5546	0.53167	17.557	2	1	Median	0.55325	0.4696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55595	0.60195	NaN	1	0	Median	186230000	115570000	70660000	124020000	77215000	46803000	0	0	0	0	0	0	62218000	38360000	23858000	13921	610	13209	84054;84055	113452;113453	113453			2	
ESTGAQVQVAGDMLPNSTER	0	Oxidation (M)	2104.9695	0.96951109	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.76	6				1	3				1	3	3	3	45.783	41.722	2;3	1.7655E-184	37443	160511_QHF_FH_JSI10i_1	318.32	295.29			0.99506	1.0455	8.012	10	2	Median	1.2315	1.0196	NaN	1	0	Median	0.92582	1.0915	10.08	3	0	Median	1.0564	1.0569	7.0957	3	1	Median	0.99731	1.026	9.747	3	1	Plateau	684380000	347590000	336790000	76263000	35055000	41208000	238810000	126980000	111830000	246200000	124790000	121410000	123100000	60758000	62341000	13922	2656;1893;2657	13210	84056;84057;84058;84059;84060;84061;84062;84063;84064;84065	113454;113455;113456;113457;113458;113459;113460;113461;113462;113463;113464;113465;113466;113467;113468;113469;113470	113462		1562	17	
ESTGAQVQVAGDMLPNSTER	0	Unmodified	2088.9746	0.97459647	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.64	8	3	1							2	5	3	2	54.868	54.224	2;3	0	49220	160511_QHF_FH_JSI11i_1	421.93	395.4			1.1383	1.0917	7.0206	9	1	Median	1.349	1.0912	2.135	2	0	Median	0.91958	1.0775	0.62555	2	0	Median	1.1894	1.1607	9.5333	3	1	Median	1.0235	1.0782	1.7595	2	0	Median	6767400000	3232000000	3535400000	1374400000	576440000	797930000	1636400000	853730000	782640000	2069700000	964290000	1105400000	1687000000	837560000	849440000	13923	2656;1893;2657	13210	84066;84067;84068;84069;84070;84071;84072;84073;84074;84075;84076;84077	113471;113472;113473;113474;113475;113476;113477;113478;113479;113480;113481;113482;113483;113484;113485;113486;113487;113488;113489;113490;113491;113492;113493	113472			23	
ESTGNMVTGQTVCK	1	Unmodified	1510.6756	0.67557768	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		25.413	25.173	2	5.4516E-05	21761	160511_QHF_FH_JSI9i_1	75.479	41.1			0.40971	0.43558	35.138	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48184	0.55843	NaN	1	1	Median	0.34837	0.33975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92506000	67206000	25300000	0	0	0	39154000	23616000	15538000	53352000	43590000	9761500	0	0	0	13924	2605	13211	84078;84079;84080	113494;113495;113496	113496			3	
ESTITLQQAEYEFLSFVR	0	Unmodified	2160.0739	0.07389981	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	98.03	88.587	2	3.7835E-70	48596	160513_QHF_FH_JSI12Kac_6	311.64	280.57			0.96247	1.031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96247	1.031	NaN	1	1	Median	17950000	9051200	8899200	0	0	0	0	0	0	0	0	0	17950000	9051200	8899200	13925	5576	13212	84081	113497	113497			1	
ESTKMAEAIR	1	Acetyl (K);Oxidation (M)	1192.5758	0.57578728	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	1	0	1	1	By MS/MS				13	0						1				1				22.641	4.8295	2	0.03096	7876	160513_QHF_FH_JSI9Kac_3	40.021	27.737			1.173	0.95877	NaN	1	0	Median	1.173	0.95877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	192430000	87853000	104570000	192430000	87853000	104570000	0	0	0	0	0	0	0	0	0	13926	5488	13213	84082	113498	113498			1	
ESTLEAIGYICQDIDPEQLQDK	1	Unmodified	2564.1952	0.19521351	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		99.172	99.107	3	0.0028456	90047	160511_QHF_FH_JSI11i_1	39.935	36.599			1.2451	1.2933	34.915	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91125	1.0103	NaN	1	1	Median	1.7012	1.6554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47630000	18662000	28968000	0	0	0	19231000	11676000	7555600	28398000	6986200	21412000	0	0	0	13927	2585	13214	84083;84084	113499;113500;113501	113500			3	
ESTLHLINAEEK	1	Unmodified	1382.7042	0.70415892	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		37.543	36.839	2;3	0.00014866	31404	160511_QHF_FH_JSI11i_2	62.891	49.754			0.80946	0.88268	20.826	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63043	0.76181	NaN	1	1	Median	1.0393	1.0227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95698000	53150000	42548000	0	0	0	53499000	33031000	20468000	42199000	20119000	22080000	0	0	0	13928	3653	13215	84085;84086;84087	113502;113503;113504	113502			3	
ESTLHLVLR	0	Unmodified	1066.6135	0.61349341	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.46	1	13	14					17	24	25	16	11	17	49.762	43.656	2;3	1.2343E-32	23675	160513_QHF_FH_JSI11Kac_6	194.2	156.11			1.0205	0.98341	73.465	57	14	Median	1.1313	0.93977	34.837	21	5	Median	0.9175	1.0453	40.468	11	4	Median	1.15	1.1099	25.004	11	0	Median	0.8546	0.94102	132.14	14	5	Median	85391000000	40635000000	44755000000	17365000000	8572700000	8792700000	18982000000	9031300000	9950700000	19284000000	7819000000	11465000000	29759000000	15212000000	14547000000	13929	2042	13216	84088;84089;84090;84091;84092;84093;84094;84095;84096;84097;84098;84099;84100;84101;84102;84103;84104;84105;84106;84107;84108;84109;84110;84111;84112;84113;84114;84115;84116;84117;84118;84119;84120;84121;84122;84123;84124;84125;84126;84127;84128;84129;84130;84131;84132;84133;84134;84135;84136;84137;84138;84139;84140;84141;84142;84143;84144;84145;84146;84147;84148;84149;84150;84151;84152;84153;84154;84155;84156	113505;113506;113507;113508;113509;113510;113511;113512;113513;113514;113515;113516;113517;113518;113519;113520;113521;113522;113523;113524;113525;113526;113527;113528;113529;113530;113531;113532;113533;113534;113535;113536;113537;113538;113539;113540;113541;113542;113543;113544;113545;113546;113547;113548;113549;113550;113551;113552;113553;113554;113555;113556;113557;113558;113559;113560;113561;113562;113563;113564;113565;113566;113567;113568;113569;113570;113571;113572;113573;113574;113575;113576;113577;113578;113579;113580;113581;113582;113583;113584;113585;113586;113587;113588;113589;113590;113591;113592;113593;113594;113595;113596;113597;113598;113599;113600;113601;113602;113603;113604;113605;113606;113607;113608;113609;113610;113611;113612;113613;113614;113615;113616;113617;113618;113619;113620;113621;113622;113623;113624;113625;113626;113627;113628;113629;113630;113631;113632;113633;113634;113635;113636;113637;113638;113639;113640;113641;113642;113643;113644;113645;113646;113647;113648;113649;113650;113651;113652;113653;113654;113655;113656;113657;113658;113659;113660;113661;113662;113663;113664;113665;113666;113667;113668;113669;113670;113671	113561			166	
ESTMYPK	1	Unmodified	854.3844	0.38440468	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	13.402	12.969	2	0.01639	10303	160511_QHF_FH_JSI9i_1	63.148	30.219			1.2866	1.2425	29.401	5	3	Median	1.4962	1.2527	NaN	1	0	Median	0.95926	1.1389	NaN	1	1	Median	1.2866	1.2425	NaN	1	0	Median	1.3486	1.4193	55.654	2	2	Median	2208100000	945830000	1262300000	346580000	154060000	192520000	457480000	206570000	250910000	513690000	201210000	312480000	890360000	383990000	506370000	13930	5200	13217	84157;84158;84159;84160;84161	113672;113673;113674;113675;113676;113677	113677			6	
ESTNSMETR	0	Unmodified	1053.4397	0.43968773	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.5309	3.8717	2	1.1413E-08	3710	160511_QHF_FH_JSI11i_1	152.86	120.25			0.94001	0.99906	9.1383	6	0	Median	1.2444	1.0235	NaN	1	0	Median	0.80103	0.94678	7.2639	2	0	Median	1.0593	1.0474	16.026	2	0	Median	0.93393	1.0014	NaN	1	0	Median	1578100000	808680000	769440000	372270000	184560000	187710000	400590000	215340000	185250000	429870000	191450000	238430000	375380000	217330000	158050000	13931	1961	13218	84162;84163;84164;84165;84166;84167	113678;113679;113680;113681;113682;113683;113684;113685;113686	113678			9	
ESTPGDSPSTVNK	1	Unmodified	1317.6048	0.6048388	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				12.72	11.871	2	0.0027346	9271	160511_QHF_FH_JSI9i_1	65.278	47.015			1.8608	1.4966	NaN	1	1	Median	1.8608	1.4966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19699000	9214500	10485000	19699000	9214500	10485000	0	0	0	0	0	0	0	0	0	13932	2950	13219	84168	113687	113687			1	
ESTQLSPADLTEGKPTDPSK	2	Unmodified	2100.0223	0.02225817	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	10					2				3	4	3	2	49.114	46.78	2;3	1.277E-25	41972	160511_QHF_FH_JSI10i_1	146.89	141.46			0.95884	1.0543	28.565	11	3	Median	1.0704	0.87292	20.172	3	2	Median	0.87943	1.0543	52.808	3	1	Median	1.1482	1.0943	18.175	3	0	Median	0.94485	1.0064	8.2436	2	0	Median	2995300000	1517400000	1477800000	656630000	295600000	361020000	717780000	384520000	333250000	838890000	424920000	413980000	781970000	412380000	369590000	13933	2282	13220	84169;84170;84171;84172;84173;84174;84175;84176;84177;84178;84179;84180	113688;113689;113690;113691;113692;113693;113694;113695;113696;113697;113698;113699;113700;113701;113702;113703;113704;113705;113706;113707;113708;113709;113710;113711;113712;113713	113703			26	
ESTQLSPADLTEGKPTDPSK	2	Acetyl (K)	2142.0328	0.032822856	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	69.785	60.344	3	0.0094371	26633	160513_QHF_FH_JSI12Kac_2	41.257	31.2			1.2978	1.3553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2978	1.3553	NaN	1	0	Median	11526000	4539400	6987000	0	0	0	0	0	0	0	0	0	11526000	4539400	6987000	13934	2282	13220	84181	113714	113714	2376		1	
ESTTSEQSAR	0	Unmodified	1094.484	0.48399538	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.76	10	1			1	2				7	2	2	3	3.2373	1.1437	2	4.4415E-11	1799	160511_QHF_FH_JSI12i_1	148.52	116.17			1.2227	1.0352	18.129	14	1	Median	1.3754	1.1018	17.859	7	1	Median	0.89241	1.0635	18.595	2	0	Median	0.86068	0.83161	2.224	2	0	Median	0.88731	0.97396	24.442	3	0	Median	1527600000	723440000	804150000	373810000	165620000	208190000	388920000	168970000	219950000	271710000	128650000	143060000	493160000	260200000	232960000	13935	1454	13221	84182;84183;84184;84185;84186;84187;84188;84189;84190;84191;84192;84193;84194;84195	113715;113716;113717;113718;113719;113720;113721;113722;113723;113724;113725;113726;113727;113728;113729;113730;113731;113732	113719			18	
ESTTTPGQYVLTGLQSGQPK	1	Unmodified	2091.0484	0.048413341	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.682	66.043	2;3	7.477E-24	59713	160511_QHF_FH_JSI10i_1	135.37	120.81			0.92776	0.88409	9.78	7	2	Median	1.1025	0.9014	16.941	2	0	Median	0.80195	0.93366	NaN	1	0	Median	0.91439	0.87748	1.0614	2	1	Median	0.89294	0.91743	15.91	2	1	Median	330880000	165570000	165300000	104670000	45235000	59439000	50389000	28444000	21945000	83072000	35125000	47946000	92741000	56768000	35973000	13936	1319	13222	84196;84197;84198;84199;84200;84201;84202;84203	113733;113734;113735;113736;113737	113735			5	
ESTTVTCTGEK	1	Unmodified	1211.534	0.53398204	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		12.099	4.8321	2	0.028644	4002	160513_QHF_FH_JSI11Kac_2	44.309	25.038			0.69578	0.68601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69578	0.68601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1040200	502460	537750	0	0	0	0	0	0	1040200	502460	537750	0	0	0	13937	3849	13223	84204	113738	113738			1	
ESTVHIETHQNTSK	1	Unmodified	1609.7696	0.76961272	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									1	3	9.6505	9.7155	3;4	4.8415E-05	7011	160511_QHF_FH_JSI12i_3	89.911	66.079			0.99505	1.0245	24.516	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74197	0.7051	NaN	1	1	Median	1.0414	1.0707	6.2351	2	1	Median	182290000	93849000	88440000	0	0	0	0	0	0	17737000	10376000	7361800	164550000	83474000	81078000	13938	426	13224	84205;84206;84207;84208	113739;113740;113741;113742	113741			4	
ESTVQGAYGSEDMK	1	Unmodified	1500.6402	0.64023803	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	25.728	24.924	2	8.8907E-13	21902	160511_QHF_FH_JSI11i_1	120.57	113.88			0.82354	0.78256	37.268	4	1	Median	1.2563	1.0124	57.656	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7455	0.7119	NaN	1	0	Median	0.8014	0.86023	NaN	1	0	Median	171470000	84789000	86678000	80387000	30901000	49485000	0	0	0	47244000	25646000	21599000	43836000	28242000	15594000	13939	1314	13225	84209;84210;84211;84212;84213	113743;113744;113745;113746	113744			4	
ESTVQGAYGSEDMK	1	Oxidation (M)	1516.6352	0.63515265	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	29.3	26.004	2	0.00043292	23054	160511_QHF_FH_JSI11i_1	82.417	69.801			0.93143	0.95735	10.197	6	0	Median	1.2539	1.0395	NaN	1	0	Median	0.76382	0.87752	8.7257	2	0	Median	1.0364	0.99889	13.504	2	0	Median	0.95077	0.98195	NaN	1	0	Median	297890000	146510000	151380000	76574000	32915000	43659000	72009000	42994000	29015000	75228000	34432000	40796000	74081000	36166000	37915000	13940	1314	13225	84214;84215;84216;84217;84218;84219	113747;113748;113749;113750;113751	113748		964	5	
ESTYQGHHTPPVQK	1	Unmodified	1607.7692	0.76921879	768	P00414	MT-CO3	Cytochrome c oxidase subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								1	3	3	10.371	10.337	2;3;4	2.6163E-05	7477	160511_QHF_FH_JSI12i_3	104.41	73.025			1.0308	1.0439	20.821	7	1	Median	NaN	NaN	NaN	0	0	Median	1.3031	1.583	NaN	1	1	Median	1.059	0.9934	14.755	3	0	Plateau	1.0308	1.0439	6.7042	3	0	Median	1034000000	482560000	551390000	0	0	0	20397000	6579900	13817000	391470000	175580000	215890000	622080000	300400000	321680000	13941	768	13226	84220;84221;84222;84223;84224;84225;84226	113752;113753;113754;113755;113756;113757;113758;113759;113760	113759			9	
ESVAPVLSVLTECAR	0	Unmodified	1629.8396	0.83960654	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	89.468	88.553	2	0.014032	76526	160511_QHF_FH_JSI12i_2	53.569	26.24			1.3832	1.5554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3832	1.5554	NaN	1	1	Median	15326000	5877500	9448100	0	0	0	0	0	0	0	0	0	15326000	5877500	9448100	13942	4908	13227	84227	113761	113761			1	
ESVDHLTIPSR	0	Unmodified	1252.6412	0.64116473	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	3	8					1	3		3	3	5	4	40.617	37.265	2;3	1.2303E-18	31726	160511_QHF_FH_JSI12i_2	155.06	138.28			1.0381	1.1213	9.9118	15	0	Median	1.3349	1.126	5.7314	3	0	Median	0.80938	0.97266	6.6261	3	0	Median	1.0572	1.0668	12.149	5	0	Median	1.0173	1.2117	8.7529	4	0	Linear	2240500000	1123300000	1117200000	412310000	180650000	231660000	587740000	321830000	265910000	824700000	396360000	428340000	415780000	224480000	191300000	13943	1520	13228	84228;84229;84230;84231;84232;84233;84234;84235;84236;84237;84238;84239;84240;84241;84242	113762;113763;113764;113765;113766;113767;113768;113769;113770;113771;113772;113773;113774;113775;113776;113777;113778;113779	113765			16	
ESVDLPEEK	1	Unmodified	1044.4975	0.49752018	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.923	29.549	2	0.0015942	26432	160511_QHF_FH_JSI12i_1	68.371	46.624			1.211	1.1813	9.5935	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2	1.4298	NaN	1	0	Median	1.211	1.1813	NaN	1	0	Median	1.2935	1.3214	NaN	1	0	Median	217970000	99282000	118690000	0	0	0	63751000	32806000	30945000	86417000	40587000	45831000	67801000	25890000	41911000	13944	3819	13229	84243;84244;84245	113780;113781;113782;113783;113784;113785	113782			6	
ESVEKTIPYSDK	2	Acetyl (K)	1436.7035	0.70349021	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		53.519	43.981	2	0.00051701	23902	160513_QHF_FH_JSI11Kac_3	90.05	61.323			0.11609	0.10928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11609	0.10928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2563200	2347500	215690	0	0	0	0	0	0	2563200	2347500	215690	0	0	0	13945	2780	13230	84246	113786	113786	2682		1	
ESVELPLTHPEYYEEMGIKPPK	2	Unmodified	2585.2723	0.27234162	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							1	2	4	6	80.63	79.935	3;4	3.8812E-16	70437	160511_QHF_FH_JSI11i_2	138.04	128.32			1.0587	1.0742	11.554	13	4	Median	1.1343	0.97269	NaN	1	0	Median	0.87657	1.0678	11.025	2	1	Median	0.97997	0.98933	16.075	4	0	Median	1.0656	1.0902	9.78	6	3	Median	1202500000	583840000	618630000	108620000	49644000	58980000	211700000	117730000	93972000	453360000	209320000	244040000	428780000	207140000	221640000	13946	1983	13231	84247;84248;84249;84250;84251;84252;84253;84254;84255;84256;84257;84258;84259	113787;113788;113789;113790;113791;113792;113793;113794;113795;113796;113797;113798;113799;113800;113801;113802;113803;113804;113805;113806;113807;113808;113809;113810;113811;113812;113813;113814	113801			28	
ESVELQNGPK	1	Unmodified	1099.551	0.55095274	5688	Q9Y5Y0	FLVCR1	Feline leukemia virus subgroup C receptor-related protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		20.756	20.103	2	0.0057065	16969	160511_QHF_FH_JSI9i_1	63.227	40.491			0.9722	0.85933	37.134	2	2	Median	0.81744	0.66088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1563	1.1174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82531000	43663000	38868000	41988000	23415000	18574000	0	0	0	40543000	20249000	20294000	0	0	0	13947	5688	13232	84260;84261	113815;113816	113816			2	
ESVEQQADSFK	1	Unmodified	1266.5728	0.57281039	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	31.172	30.792	2	4.6639E-06	27525	160511_QHF_FH_JSI10i_1	115.82	85.746			0.61607	0.9343	18.969	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.58224	0.68642	NaN	1	1	Median	0.98811	0.9343	NaN	1	1	Median	0.94835	0.96982	NaN	1	1	Median	286540000	140530000	146010000	0	0	0	109190000	69010000	40175000	65095000	28994000	36101000	112260000	42530000	69730000	13948	409	13233	84262;84263;84264	113817;113818;113819	113819			3	
ESVFTVEGGHR	0	Unmodified	1216.5836	0.58364985	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.5		8	8					9	8	9	8	8	8	30.627	25.479	2;3	1.1558E-37	20933	160511_QHF_FH_JSI12i_3	199.46	170.37			1.0015	1.0325	13.566	31	4	Median	1.3252	1.1326	14.049	8	3	Median	0.8622	1.0422	14.653	7	1	Median	1.0196	1.0201	3.3282	8	0	Median	0.92294	1.0074	15.99	8	0	Median	7929600000	3550800000	4378800000	961800000	386470000	575330000	912600000	455210000	457390000	3404700000	1437000000	1967700000	2650500000	1272200000	1378300000	13949	4296	13234	84265;84266;84267;84268;84269;84270;84271;84272;84273;84274;84275;84276;84277;84278;84279;84280;84281;84282;84283;84284;84285;84286;84287;84288;84289;84290;84291;84292;84293;84294;84295;84296;84297	113820;113821;113822;113823;113824;113825;113826;113827;113828;113829;113830;113831;113832;113833;113834;113835;113836;113837;113838;113839;113840;113841;113842;113843;113844;113845;113846;113847;113848;113849;113850;113851;113852;113853;113854;113855;113856;113857;113858;113859;113860;113861;113862;113863;113864;113865;113866;113867;113868;113869;113870;113871;113872;113873;113874;113875;113876;113877	113869			55	
ESVGNSTR	0	Unmodified	848.39881	0.39880919	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.594	4.4947	2	0.026718	2219	160511_QHF_FH_JSI11i_1	51.864	29.936			0.54993	0.53129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54993	0.53129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159510000	95964000	63547000	0	0	0	0	0	0	159510000	95964000	63547000	0	0	0	13950	2645	13235	84298	113878	113878			1	
ESVHLETYPK	1	Unmodified	1201.5979	0.59790293	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.655	27.355	3	0.021229	22997	160511_QHF_FH_JSI12i_2	29.936	20.981			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13951	4247	13236	84299	113879	113879			1	
ESVLIISTDPAHNISDAFDQK	1	Unmodified	2299.1332	0.1332056	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	85.636	85.082	3	8.2026E-08	77257	160511_QHF_FH_JSI10i_1	89.668	76.997			0.56163	0.79778	14.988	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.55899	0.65276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77562	0.83557	6.5465	2	0	Median	118830000	74065000	44761000	0	0	0	51702000	33630000	18071000	0	0	0	67125000	40435000	26690000	13952	357	13237	84300;84301;84302	113880;113881	113881			1	
ESVLPEDAILPLMK	1	Unmodified	1553.8375	0.83748127	3202	Q70J99	UNC13D	Protein unc-13 homolog D	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			99.916	99.91	2	0.0089999	90636	160511_QHF_FH_JSI10i_1	47.559	36.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13953	3202	13238	84303	113882	113882			1	
ESVLQFYPK	1	Unmodified	1109.5757	0.57571092	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.59	3	4					2	5		4	3	3	4	65.743	59.992	2	1.9956E-06	54230	160511_QHF_FH_JSI10i_1	128.69	111.3			1.1462	1.1765	14.724	12	6	Median	1.305	1.0938	2.8809	2	1	Median	1.024	1.1871	10.976	3	1	Median	1.1296	1.1443	22.272	3	2	Median	1.2224	1.3675	10.386	4	2	Median	1364600000	591610000	773020000	212460000	85702000	126760000	335620000	167360000	168260000	342320000	149940000	192380000	474230000	188600000	285630000	13954	5254	13239	84304;84305;84306;84307;84308;84309;84310;84311;84312;84313;84314;84315;84316;84317	113883;113884;113885;113886;113887;113888;113889;113890;113891;113892	113887			9	
ESVLQMMQAGQR	0	Unmodified	1376.6541	0.65405438	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	2	1	62.557	61.754	2	6.0653E-53	53272	160511_QHF_FH_JSI12i_3	211.78	168.91			0.93504	0.95078	64.84	7	5	Median	0.34425	0.29558	NaN	1	1	Median	0.93504	1.0657	58.956	3	3	Median	0.524	0.50877	88.428	2	1	Median	0.97557	1.0143	NaN	1	0	Median	3015600000	2024900000	990700000	876970000	701630000	175330000	729350000	530130000	199220000	889700000	527640000	362060000	519630000	265540000	254080000	13955	1459	13240	84318;84319;84320;84321;84322;84323;84324	113893;113894;113895;113896;113897;113898;113899	113899			7	
ESVLTATSILNNPIVK	1	Unmodified	1697.9564	0.95635086	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	90.977	90.431	2;3	1.5813E-07	78027	160511_QHF_FH_JSI12i_2	140.31	115.97			1.8397	1.9123	6.2926	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0916	1.9993	NaN	1	1	Median	1.6182	1.8291	NaN	1	1	Median	48979000	32399000	16580000	4991600	4991600	0	9533700	9533700	0	23241000	13865000	9376400	11212000	4008700	7203500	13956	2880	13241	84325;84326;84327;84328;84329	113900;113901;113902;113903;113904;113905	113900			6	
ESVNAAFEMTLTEGSK	1	Unmodified	1712.7927	0.79271593	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	70.375	69.78	2	1.2782E-07	63602	160511_QHF_FH_JSI12i_1	98.592	75.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13957	1341	13242	84330;84331	113906;113907	113907			2	
ESVNSHVTTLGPQNFPANDK	1	Unmodified	2154.0342	0.03416026	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	48.178	47.223	3	0.0083241	40630	160511_QHF_FH_JSI11i_2	38.377	29.093			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13958	3439	13243	84332;84333	113908;113909	113909			2	
ESVPEFPLSPPK	1	Unmodified	1325.6867	0.68671794	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.03	8	1	1			5	3			3	5	4	6	69.121	64.074	2;3	6.2179E-23	62030	160511_QHF_FH_JSI12i_1	177.78	145.84			0.97947	1.0048	60.448	18	2	Median	1.1925	0.96578	101.56	3	0	Median	0.86549	1.0109	30.831	5	1	Median	1.0505	1.0323	5.0453	4	0	Median	0.94006	1.0091	77.161	6	1	Median	6638700000	3376700000	3262000000	1556500000	735210000	821310000	1557600000	823850000	733700000	1798600000	888790000	909860000	1726000000	928850000	797140000	13959	1105	13244	84334;84335;84336;84337;84338;84339;84340;84341;84342;84343;84344;84345;84346;84347;84348;84349;84350;84351	113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920;113921;113922;113923;113924;113925;113926;113927;113928;113929;113930;113931;113932;113933;113934;113935;113936;113937;113938;113939;113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951;113952;113953;113954;113955	113926			45	
ESVPLDDQEK	1	Unmodified	1158.5404	0.54044763	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.387	22.843	2	3.2155E-05	20081	160511_QHF_FH_JSI12i_1	96.331	76.545			1.1804	1.3228	16.68	4	0	Linear	1.483	1.2104	NaN	1	0	Median	0.78682	0.92653	NaN	1	0	Median	1.0921	1.0687	NaN	1	0	Median	1.2759	1.3669	NaN	1	0	Median	399270000	195220000	204050000	102710000	43215000	59494000	89062000	55319000	33743000	100200000	51964000	48241000	107290000	44723000	62567000	13960	4234	13245	84352;84353;84354;84355	113956;113957;113958;113959;113960;113961	113957			6	
ESVPPSIIMSSQK	1	Unmodified	1401.7174	0.71736614	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.756	51.347	2	0.0068405	46018	160511_QHF_FH_JSI10i_1	60.434	42.122			1.145	1.3296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.145	1.3296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70198000	27798000	42400000	0	0	0	70198000	27798000	42400000	0	0	0	0	0	0	13961	653	13246	84356	113962	113962			1	
ESVQGYTTK	1	Unmodified	1011.4873	0.48728985	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		13.822	13.637	2	0.00024858	11110	160511_QHF_FH_JSI11i_1	98.233	34.946			0.1462	0.16031	1.0211	2	2	Median	NaN	NaN	NaN	0	0	Median	0.13021	0.15915	NaN	1	1	Median	0.16415	0.16147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	519960000	435950000	84013000	0	0	0	278080000	240620000	37460000	241890000	195330000	46553000	0	0	0	13962	2567	13247	84357;84358	113963;113964	113963			2	
ESVSPEDSEK	1	Unmodified	1105.4775	0.47751302	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.67	5.19	2				1						1	2		10.669	8.126	2	0.00023715	7408	160511_QHF_FH_JSI10i_1	80.755	14.456			1.2977	1.2641	14.169	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3128	1.5342	NaN	1	0	Median	1.2397	1.2131	5.827	2	0	Median	NaN	NaN	NaN	0	0	Median	105010000	43070000	61940000	0	0	0	57431000	24806000	32625000	47578000	18264000	29314000	0	0	0	13963	1430	13248	84359;84360;84361	113965;113966;113967;113968	113968			4	
ESVTDYTTPSSSLPNTVATNNTK	1	Unmodified	2426.1449	0.1448925	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	57.299	56.647	2;3	5.0526E-24	51297	160511_QHF_FH_JSI11i_1	216.39	209.95			1.0962	0.99409	13.194	8	1	Median	1.1926	1.0048	9.8342	2	0	Median	0.75078	0.87765	7.7671	2	0	Median	1.1244	1.0625	1.1033	2	0	Median	0.95348	0.99573	25.87	2	1	Median	319630000	155780000	163850000	90947000	46411000	44536000	63597000	37996000	25601000	99627000	43103000	56525000	65460000	28271000	37189000	13964	5646	13249	84362;84363;84364;84365;84366;84367;84368;84369	113969;113970;113971;113972;113973;113974;113975;113976;113977;113978;113979;113980;113981;113982;113983;113984	113969			15	
ESWEMDTK	1	Unmodified	1024.4172	0.41716137	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.15	27.79	2	0.0013208	24539	160511_QHF_FH_JSI11i_1	91.069	70.444			1.2147	1.2462	28.96	3	1	Median	NaN	NaN	NaN	0	0	Median	0.6562	0.77378	NaN	1	0	Median	1.3457	1.3059	NaN	1	0	Median	1.2147	1.2462	NaN	1	1	Median	145910000	71814000	74095000	0	0	0	46259000	25637000	20622000	52303000	24286000	28016000	47346000	21890000	25456000	13965	2419	13250	84370;84371;84372	113985;113986	113985			2	
ESWEMNSEEK	1	Unmodified	1267.5027	0.50268192	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	2	3	30.301	26.252	2	6.2473E-11	22934	160511_QHF_FH_JSI11i_1	145.72	136.37			1.139	1.0847	17.93	7	0	Median	1.1694	0.936	NaN	1	0	Median	0.88282	1.0437	3.4512	2	0	Median	1.2361	1.1936	11.342	2	0	Median	1.2324	1.3201	27.776	2	0	Median	3688100000	1654800000	2033300000	943640000	399280000	544370000	983920000	508020000	475910000	929290000	436760000	492520000	831220000	310720000	520500000	13966	2193	13251	84373;84374;84375;84376;84377;84378;84379;84380	113987;113988;113989;113990;113991;113992;113993;113994;113995;113996;113997;113998	113987			12	
ESWEMNSEEK	1	Oxidation (M)	1283.4976	0.49759654	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	18.534	16.172	2	1.8955E-07	12314	160511_QHF_FH_JSI10i_1	120.99	103.75			0.95877	0.95068	19.584	7	3	Median	0.95877	0.77835	NaN	1	1	Median	0.71229	0.81927	NaN	1	0	Median	1.1493	1.1188	21.95	3	2	Median	0.96386	1.0224	10.282	2	0	Median	478630000	248760000	229880000	51750000	30912000	20837000	116670000	68513000	48156000	155160000	77087000	78075000	155050000	72244000	82809000	13967	2193	13251	84381;84382;84383;84384;84385;84386;84387	113999;114000;114001;114002;114003;114004;114005;114006	114005		1834	8	
ESWHGKPLPK	2	Unmodified	1177.6244	0.62439245	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.98	0.134		1	54							16	12	14	13	18.292	17.722	2;3;4	2.9172E-12	14208	160511_QHF_FH_JSI11i_3	138.1	116.63			0.85799	0.80203	77.571	50	12	Median	1.13	0.96702	67.986	15	4	Median	0.92284	1.0536	80.33	10	3	Median	0.62039	0.58684	90.077	12	3	Median	0.5534	0.5648	57.814	13	2	Median	20658000000	10039000000	10619000000	4343300000	1651000000	2692400000	3896700000	2007800000	1888800000	4214000000	2109500000	2104500000	8203800000	4270500000	3933300000	13968	1322	13252	84388;84389;84390;84391;84392;84393;84394;84395;84396;84397;84398;84399;84400;84401;84402;84403;84404;84405;84406;84407;84408;84409;84410;84411;84412;84413;84414;84415;84416;84417;84418;84419;84420;84421;84422;84423;84424;84425;84426;84427;84428;84429;84430;84431;84432;84433;84434;84435;84436;84437;84438;84439;84440;84441;84442	114007;114008;114009;114010;114011;114012;114013;114014;114015;114016;114017;114018;114019;114020;114021;114022;114023;114024;114025;114026;114027;114028;114029;114030;114031;114032;114033;114034;114035;114036;114037;114038;114039;114040;114041;114042;114043;114044;114045;114046;114047;114048;114049;114050;114051;114052;114053;114054;114055;114056;114057;114058;114059;114060;114061;114062;114063;114064;114065;114066;114067;114068;114069;114070;114071;114072	114019			65	
ESWHGKPLPK	2	Acetyl (K)	1219.635	0.63495714	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.634							1	5	7	3	3	3	4	43.724	34.114	2;3	5.2528E-06	18494	160513_QHF_FH_JSI11Kac_6	118.18	101.97			0.85987	0.846	27.345	13	0	Median	1.0017	0.846	5.1255	3	0	Median	0.87092	1.0309	6.2808	3	0	Median	0.55502	0.55573	13.057	3	0	Median	0.814	0.87607	15.947	4	0	Median	639080000	350170000	288910000	108410000	51031000	57377000	252450000	140150000	112300000	64818000	42822000	21997000	213400000	116170000	97231000	13969	1322	13252	84443;84444;84445;84446;84447;84448;84449;84450;84451;84452;84453;84454;84455	114073;114074;114075;114076;114077;114078;114079;114080;114081;114082;114083;114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094	114074	1247		21	
ESYDDVSSFR	0	Unmodified	1203.5044	0.50439647	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	40.94	36.681	2	6.4989E-05	32658	160511_QHF_FH_JSI9i_1	90.15	85.185			0.95261	0.95709	6.7845	7	0	Median	1.3489	1.0967	NaN	1	0	Median	0.82282	0.98771	4.4544	2	0	Median	0.97625	0.94309	1.3878	2	0	Median	0.90599	0.97261	9.8957	2	0	Median	1382300000	686470000	695830000	296280000	120300000	175980000	279840000	160220000	119620000	397080000	201960000	195110000	409090000	203990000	205110000	13970	4322	13253	84456;84457;84458;84459;84460;84461;84462	114095;114096;114097;114098;114099;114100;114101;114102;114103;114104;114105	114104			11	
ESYDYLK	1	Unmodified	916.41781	0.4178133	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.312	28.717	2	0.015192	25349	160511_QHF_FH_JSI10i_1	65.038	48.111			1.0343	0.99512	14.661	4	0	Median	1.2095	1.0062	NaN	1	0	Median	1.0698	1.2722	NaN	1	0	Median	0.99999	0.98411	NaN	1	0	Median	0.85315	0.90315	NaN	1	0	Median	1470300000	732060000	738230000	328370000	156990000	171380000	417680000	222270000	195410000	396990000	193880000	203110000	327240000	158920000	168320000	13971	5246	13254	84463;84464;84465;84466	114106;114107;114108;114109;114110;114111;114112;114113;114114	114110			9	
ESYDYNPNK	1	Unmodified	1128.4724	0.47236807	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	16.705	16.116	2	0.0010102	13760	160511_QHF_FH_JSI12i_1	70.919	61.331			1.1279	1.2529	12.218	3	2	Plateau	1.5111	1.2529	NaN	1	1	Median	1.3231	1.4885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1279	1.1754	NaN	1	0	Median	100090000	41623000	58465000	27246000	9494200	17751000	34253000	16151000	18101000	0	0	0	38590000	15977000	22612000	13972	540	13255	84467;84468;84469	114115;114116;114117	114115			3	
ESYPVFYLFR	0	Unmodified	1319.655	0.65502388	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.64	2	4	4					5	4	4	6	4	5	93.593	88.764	2	3.8021E-45	85162	160511_QHF_FH_JSI11i_2	225.08	200.31			1.1389	1.0868	13.676	18	1	Median	1.2158	1.0184	5.8973	4	0	Median	0.83518	0.97723	12.083	5	0	Median	1.1575	1.102	2.3362	4	1	Median	1.1748	1.1254	7.9172	5	0	Linear	10681000000	5344500000	5336400000	1726700000	799750000	926960000	3741200000	2044600000	1696600000	2868200000	1381400000	1486800000	2344800000	1118700000	1226000000	13973	1332	13256	84470;84471;84472;84473;84474;84475;84476;84477;84478;84479;84480;84481;84482;84483;84484;84485;84486;84487;84488	114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132;114133;114134;114135;114136;114137;114138;114139;114140;114141;114142;114143;114144;114145;114146;114147;114148;114149;114150;114151;114152;114153;114154;114155;114156	114139			39	
ESYSIYVYK	1	Unmodified	1150.5546	0.55464113	1235	Q16778;P23527;P06899;Q8N257;P33778;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.79	6.46	4	3				3	2	3	4	3	6	4	6	55.225	48.638	2	1.5744E-16	26719	160513_QHF_FH_JSI10Kac_4	167.24	137.08			1.385	1.1513	31.186	19	2	Plateau	1.9507	1.5951	33.616	3	0	Plateau	1.3738	1.6267	16.681	6	1	Median	0.84914	0.82969	19.106	4	0	Median	0.90202	0.98342	13.609	6	1	Median	1758000000	774100000	983910000	329990000	133810000	196170000	559400000	233510000	325890000	394200000	190620000	203590000	474420000	216160000	258260000	13974	1235	13257	84489;84490;84491;84492;84493;84494;84495;84496;84497;84498;84499;84500;84501;84502;84503;84504;84505;84506;84507	114157;114158;114159;114160;114161;114162;114163;114164;114165;114166;114167;114168;114169;114170;114171;114172;114173;114174;114175;114176;114177;114178	114163			22	
ESYSVYVYK	1	Unmodified	1136.539	0.53899107	1902;2915	Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	5.94	4	1	2		1	4	3	4	4	5	8	5	5	47.822	40.302	2	5.7055E-33	23428	160513_QHF_FH_JSI10Kac_4	218.63	181.07			1.0617	1.0218	24.868	23	1	Median	1.2295	1.0213	15.62	5	0	Median	1.2533	1.4282	8.84	8	1	Median	0.89142	0.86512	10.053	5	0	Median	0.95352	1.0119	7.8875	5	0	Median	4796400000	2372100000	2424200000	771620000	347320000	424300000	1791300000	884310000	906990000	1166400000	607030000	559320000	1067100000	533470000	533640000	13975	1902;2915	13258	84508;84509;84510;84511;84512;84513;84514;84515;84516;84517;84518;84519;84520;84521;84522;84523;84524;84525;84526;84527;84528;84529;84530	114179;114180;114181;114182;114183;114184;114185;114186;114187;114188;114189;114190;114191;114192;114193;114194;114195;114196;114197;114198;114199;114200;114201;114202;114203;114204;114205;114206;114207;114208;114209;114210;114211;114212;114213;114214;114215;114216;114217;114218;114219	114189			41	
ESYVETELIFALAK	1	Unmodified	1611.8396	0.83958976	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	101.48	101.36	2	2.7171E-21	89080	160511_QHF_FH_JSI11i_2	172.61	148.27			1.1001	1.0989	24.992	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.422	1.7812	NaN	1	0	Median	1.087	1.086	NaN	1	0	Median	1.3092	1.4786	NaN	1	0	Median	495170000	242420000	252750000	0	0	0	104430000	46379000	58050000	238620000	132630000	105990000	152120000	63415000	88705000	13976	2155	13259	84531;84532;84533	114220;114221	114221			2	
ESYYQLMK	1	Unmodified	1060.4899	0.48993238	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	2	1	43.996	43.216	2	0.0006475	36942	160511_QHF_FH_JSI11i_2	101.33	91.739			1.2418	1.2608	15.003	6	1	Median	1.2894	1.096	NaN	1	0	Median	1.0979	1.3457	18.568	2	1	Median	1.2237	1.2242	20.942	2	0	Median	1.2022	1.3471	NaN	1	0	Median	817820000	406310000	411510000	138990000	76254000	62732000	226430000	105210000	121220000	289940000	138950000	150990000	162460000	85893000	76569000	13977	1163	13260	84534;84535;84536;84537;84538;84539;84540	114222;114223;114224;114225;114226;114227;114228;114229;114230;114231	114228			10	
ETAAACVEK	1	Unmodified	977.4488	0.44879585	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.9423	9.7067	2	0.016648	7517	160511_QHF_FH_JSI10i_1	53.317	33.878			0.85864	1.0097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85864	1.0097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108150000	66749000	41399000	0	0	0	108150000	66749000	41399000	0	0	0	0	0	0	13978	2688	13261	84541	114232	114232			1	
ETAAGGLTLK	1	Unmodified	959.52876	0.52876073	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				2	1		29.66	29.336	2	0.0026467	26093	160511_QHF_FH_JSI10i_1	72.607	17.076			0.85747	1.0246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85747	1.0246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54695000	28651000	26044000	0	0	0	54695000	28651000	26044000	0	0	0	0	0	0	13979	3888	13262	84542;84543;84544	114233;114234;114235	114233			3	
ETAAIFHYLIIENR	0	Unmodified	1688.8886	0.88860564	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.009	76.416	3	1.7118E-12	42189	160513_QHF_FH_JSI10Kac_6	132.05	87.243			0.74546	0.86015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74546	0.86015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82170000	42221000	39949000	0	0	0	82170000	42221000	39949000	0	0	0	0	0	0	13980	2434	13263	84545	114236	114236			1	
ETAATFLK	1	Unmodified	879.47018	0.47018322	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		43.744	33.527	2	0.048712	20110	160513_QHF_FH_JSI11Kac_4	52.403	25.282			1.5359	1.5177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5359	1.5177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4375200	1673300	2701900	0	0	0	0	0	0	4375200	1673300	2701900	0	0	0	13981	3686	13264	84546	114237	114237			1	
ETAAVIFLHGLGDTGHSWADALSTIR	0	Unmodified	2737.3824	0.38237785	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		92.925	83.805	4	1.4965E-31	47204	160513_QHF_FH_JSI11Kac_6	203.82	172.64			1.2958	1.1614	6.1025	2	2	Median	1.4342	1.2126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1707	1.1123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	293530000	108460000	185070000	162760000	52030000	110730000	0	0	0	130760000	56432000	74332000	0	0	0	13982	685	13265	84547;84548	114238;114239	114238			2	
ETADAITK	1	Unmodified	847.42871	0.42871234	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.907	10.522	2	0.017919	7931	160511_QHF_FH_JSI9i_1	48.157	20.421			0.82899	0.84236	5.9476	4	0	Median	1.1707	0.93196	NaN	1	0	Median	0.69276	0.81297	NaN	1	0	Median	0.87632	0.851	NaN	1	0	Median	0.78422	0.83381	NaN	1	0	Median	4047400000	1945300000	2102200000	1192600000	487250000	705340000	984400000	524590000	459810000	863960000	451070000	412890000	1006500000	482350000	524130000	13983	2159	13266	84549;84550;84551;84552	114240	114240			1	
ETADFKVYTK	2	Acetyl (K)	1242.6132	0.61321864	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		55.496	45.919	2	0.0029416	24785	160513_QHF_FH_JSI11Kac_3	79.148	66.111			0.17468	0.16482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17468	0.16482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2625200	1997400	627740	0	0	0	0	0	0	2625200	1997400	627740	0	0	0	13984	1192	13267	84553	114241	114241	1050;1051		1	
ETADITHALSK	1	Unmodified	1184.6037	0.60371659	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.105	31.866	3	0.0026327	28530	160511_QHF_FH_JSI11i_1	55.261	45.418			1.8781	1.7952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8781	1.7952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20920000	9755000	11165000	0	0	0	0	0	0	20920000	9755000	11165000	0	0	0	13985	2612	13268	84554	114242	114242			1	
ETADTDTADQVMASFK	1	Unmodified	1728.7512	0.75124504	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.339	64.725	2	9.3498E-52	58730	160511_QHF_FH_JSI10i_1	214.81	202.6			0.80539	0.88657	51.369	4	0	Median	0.56917	0.46539	NaN	1	0	Median	0.74473	0.87698	NaN	1	0	Median	1.6681	1.6373	NaN	1	0	Median	0.87099	0.89626	NaN	1	0	Median	645670000	329320000	316350000	128070000	76886000	51181000	142450000	79026000	63422000	184750000	65688000	119060000	190410000	107720000	82684000	13986	1021	13269	84555;84556;84557;84558	114243;114244;114245;114246;114247;114248;114249;114250;114251;114252;114253	114251			11	
ETADVIAK	1	Unmodified	845.44945	0.44944778	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	16.516	16.043	2	0.014487	13427	160511_QHF_FH_JSI11i_1	51.346	21.986			1.2667	1.3519	14.575	4	0	Median	1.8052	1.4943	NaN	1	0	Median	1.3371	1.5624	NaN	1	0	Median	1.2	1.1627	NaN	1	0	Median	1.1871	1.223	NaN	1	0	Median	348610000	179870000	168740000	88754000	36235000	52520000	91672000	52390000	39282000	96922000	53459000	43463000	71258000	37785000	33473000	13987	347	13270	84559;84560;84561;84562	114254;114255	114254			2	
ETAEAEAAMR	0	Oxidation (M)	1093.471	0.47098786	5817				yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	17.289	16.967	2	0.01887	14465	160511_QHF_FH_JSI12i_1	45.081	13.792	+		0.81718	0.82094	18.192	4	0	Median	NaN	NaN	NaN	0	0	Median	0.52354	0.60585	NaN	1	0	Median	0.78005	0.75744	NaN	1	0	Median	0.85608	0.88977	0	2	0	Median	543470000	308970000	234500000	0	0	0	152400000	89949000	62449000	89792000	53948000	35845000	301280000	165070000	136200000	13988	5817	13271	84563;84564;84565;84566	114256	114256		2761	1	
ETAEAYLGK	1	Unmodified	980.48148	0.48147619	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	5.92	4	1	2			3	3			2	5	3	3	30.97	26.346	2	6.0307E-12	22906	160511_QHF_FH_JSI9i_1	167.24	153.08			0.90462	0.97691	12.883	13	1	Median	1.3479	1.1254	2.6392	2	0	Median	0.79192	0.94935	7.712	5	1	Median	1.002	0.97691	14.092	3	0	Median	0.89926	0.94903	20.761	3	0	Median	11278000000	5403100000	5874500000	2108900000	911830000	1197100000	3319000000	1788800000	1530300000	2566700000	1099100000	1467600000	3282900000	1603400000	1679500000	13989	982	13272	84567;84568;84569;84570;84571;84572;84573;84574;84575;84576;84577;84578;84579	114257;114258;114259;114260;114261;114262;114263;114264;114265;114266;114267;114268;114269;114270;114271;114272;114273;114274;114275	114269			19	
ETAEAYLGKK	2	Unmodified	1108.5764	0.57643921	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				20.413	19.484	2	0.0031794	16568	160511_QHF_FH_JSI9i_2	76.1	70.734			1.5093	1.2518	NaN	1	1	Median	1.5093	1.2518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26367000	7874600	18492000	26367000	7874600	18492000	0	0	0	0	0	0	0	0	0	13990	982	13273	84580	114276	114276			1	
ETAEAYLGKK	2	Acetyl (K)	1150.587	0.58700389	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	44.263	35.427	2	0.0031722	19644	160513_QHF_FH_JSI12Kac_3	81.972	62.701			0.1739	0.18756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1739	0.18756	NaN	1	1	Median	1710800	1474200	236590	0	0	0	0	0	0	0	0	0	1710800	1474200	236590	13991	982	13273	84581	114277	114277	764		1	
ETAEHENRELQSK	1	Unmodified	1569.7383	0.73831259	3590	Q8NBI5	SLC43A3	Solute carrier family 43 member 3	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	6.1442	5.9554	3	7.2582E-11	3534	160511_QHF_FH_JSI12i_3	150.22	134.08			0.83402	0.8526	15.662	5	0	Median	1.3449	1.1263	NaN	1	0	Median	0.76017	0.94503	NaN	1	0	Median	0.86777	0.83994	2.1168	2	0	Median	0.74226	0.74436	NaN	1	0	Median	732630000	361930000	370700000	73663000	29190000	44473000	102720000	55465000	47256000	327990000	163130000	164870000	228250000	114150000	114100000	13992	3590	13274	84582;84583;84584;84585;84586	114278;114279;114280;114281	114281			4	
ETAEHLDLAGASSRPK	1	Unmodified	1680.8431	0.84311201	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	25.256	24.865	3;4	5.5154E-05	20996	160511_QHF_FH_JSI11i_3	82.464	64.051			0.53807	0.66235	65.629	5	3	Median	0.3912	0.33085	NaN	1	1	Median	0.53807	0.66235	NaN	1	1	Median	1.4125	1.2973	3.8287	2	0	Median	0.36756	0.37077	NaN	1	1	Median	253570000	141300000	112270000	34501000	20118000	14384000	31229000	22264000	8965000	108210000	42210000	66003000	79622000	56704000	22918000	13993	3353	13275	84587;84588;84589;84590;84591;84592;84593	114282;114283;114284;114285;114286;114287;114288	114282			7	
ETAELSETLTR	0	Unmodified	1248.6198	0.61976058	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.708	37.096	2	4.3143E-05	33624	160511_QHF_FH_JSI12i_1	111.06	94.854			1.0488	1.1312	25.122	4	0	Median	2.1083	1.6946	NaN	1	0	Median	0.97982	1.1673	NaN	1	0	Median	1.1226	1.0962	NaN	1	0	Median	0.87423	0.93663	NaN	1	0	Median	323310000	164660000	158640000	59928000	26234000	33694000	75673000	43833000	31840000	95871000	40933000	54938000	91834000	53662000	38172000	13994	3083	13276	84594;84595;84596;84597	114289;114290;114291;114292;114293;114294	114292			6	
ETAENSLK	1	Unmodified	890.43453	0.434526	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	8.7824	6.1009	2	0.0021479	5695	160511_QHF_FH_JSI12i_1	82.279	23.298			0.83901	0.84704	15.283	6	0	Median	1.2526	1.0298	NaN	1	0	Median	0.66006	0.77417	0.25863	2	0	Median	1.0254	0.99619	13.093	2	0	Median	0.74307	0.79008	NaN	1	0	Median	3571400000	1879400000	1692000000	719290000	369130000	350160000	851860000	521510000	330350000	998410000	535620000	462780000	1001800000	453150000	548690000	13995	3852	13277	84598;84599;84600;84601;84602;84603	114295;114296;114297;114298;114299	114296			5	
ETAENYLGHTAK	1	Unmodified	1332.631	0.63099397	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.17	5	8	9				6	8	1	7	10	10	10	24.609	20.558	2;3	1.3511E-24	16782	160511_QHF_FH_JSI11i_2	183.33	171.29			0.9079	0.96027	28.628	37	10	Median	1.1946	0.97275	12.159	7	1	Median	0.80512	0.96737	23.885	10	3	Median	0.94874	0.92727	34.781	10	2	Median	0.83248	0.91169	36.054	10	4	Median	18601000000	9563800000	9036800000	3465600000	1555900000	1909800000	4943200000	2824600000	2118600000	5933400000	3056500000	2876900000	4258300000	2126800000	2131500000	13996	1480	13278	84604;84605;84606;84607;84608;84609;84610;84611;84612;84613;84614;84615;84616;84617;84618;84619;84620;84621;84622;84623;84624;84625;84626;84627;84628;84629;84630;84631;84632;84633;84634;84635;84636;84637;84638;84639;84640	114300;114301;114302;114303;114304;114305;114306;114307;114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318;114319;114320;114321;114322;114323;114324;114325;114326;114327;114328;114329;114330;114331;114332;114333;114334;114335;114336;114337;114338;114339;114340;114341;114342;114343;114344;114345;114346;114347;114348;114349;114350;114351;114352;114353;114354;114355;114356;114357;114358;114359;114360;114361;114362;114363;114364	114342			65	
ETAESVLK	1	Unmodified	875.46001	0.46001246	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	23.261	19.694	2	1.138E-07	5748	160513_QHF_FH_JSI9Kac_3	135.77	77.599			0.98288	0.97403	13.189	7	0	Median	1.079	0.88005	NaN	1	0	Median	0.78601	0.93712	11.059	2	0	Median	1.0816	1.0555	11.359	2	0	Median	0.936	1.01	22.55	2	0	Median	3335600000	1676000000	1659600000	853860000	379660000	474200000	607370000	308500000	298870000	993210000	504760000	488460000	881190000	483120000	398060000	13997	1417	13279	84641;84642;84643;84644;84645;84646;84647;84648	114365;114366;114367;114368;114369;114370;114371;114372;114373;114374;114375	114372			11	
ETAHSVLGSDANDVVITVPFDFGEK	1	Unmodified	2646.2813	0.2813264	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	99.14	98.931	3	0.00042249	85042	160511_QHF_FH_JSI12i_2	41.911	34.014			1.187	1.182	8.8288	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3226	1.2581	NaN	1	1	Median	1.0653	1.1104	NaN	1	0	Median	32062000	13540000	18522000	0	0	0	0	0	0	15418000	4209300	11208000	16644000	9330300	7313900	13998	2291	13280	84649;84650	114376;114377	114376			2	
ETAIELGYLTAEQFDEWVK	1	Unmodified	2241.0841	0.084130145	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	2	3	102.27	102.16	2;3	0	88056	160511_QHF_FH_JSI12i_2	397.27	338.07			1.1169	1.1669	12.59	8	0	Median	1.4528	1.2258	3.8419	2	0	Median	1.0002	1.1414	NaN	1	0	Median	0.99931	1.0076	12.252	2	0	Median	1.1252	1.2484	15.934	3	0	Median	1576600000	785250000	791350000	310600000	125010000	185590000	36406000	18898000	17508000	627280000	328460000	298820000	602310000	312880000	289430000	13999	887	13281	84651;84652;84653;84654;84655;84656;84657;84658	114378;114379;114380;114381;114382;114383;114384;114385;114386;114387	114378			10	
ETALLIDPK	1	Unmodified	998.56481	0.56481189	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	51.889	49.508	2	7.1384E-05	44442	160511_QHF_FH_JSI11i_1	96.253	77.522			0.98517	0.87593	25.823	5	0	Median	1.0148	0.82436	NaN	1	0	Median	0.67303	0.79741	NaN	1	0	Median	0.90436	0.87593	NaN	1	0	Median	1.1585	1.2519	24.85	2	0	Median	985210000	524200000	461010000	226220000	114560000	111660000	217410000	120720000	96683000	282850000	147840000	135010000	258730000	141070000	117670000	14000	1862	13282	84659;84660;84661;84662;84663	114388;114389;114390;114391;114392;114393;114394;114395;114396	114388			9	
ETALLQELEDLELGI	0	Unmodified	1684.8771	0.87709748	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.5	103.4	2	0.052366	91182	160511_QHF_FH_JSI11i_2	44.188	28.649			1.2675	1.3013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2675	1.3013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21277000	7655000	13622000	0	0	0	0	0	0	21277000	7655000	13622000	0	0	0	14001	4535	13283	84664	114397	114397			1	
ETANAIVSQQTPQR	0	Unmodified	1541.7798	0.77978347	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	10.6	4.8	1					4						2	3	32.143	26.176	2;3	0.0015262	15461	160513_QHF_FH_JSI11Kac_3	84.718	66.853			1.2213	1.2733	10.659	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2599	1.1964	NaN	1	1	Median	1.3159	1.3693	10.278	2	1	Median	49392000	25560000	23832000	0	0	0	0	0	0	1967200	752640	1214600	47425000	24807000	22618000	14002	1506	13284	84665;84666;84667;84668;84669	114398;114399;114400;114401;114402	114400			4	
ETAPGDISPYTIPEEDR	0	Unmodified	1888.8691	0.86905199	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	15.6	0.49								2	3	3	1		1	25.852	17.479	4	0.063215	10942	160513_QHF_FH_JSI9Kac_5	3.7197	1.1572			0.82214	0.74819	12.577	5	0	Median	0.76235	0.63777	9.219	3	0	Plateau	0.5898	0.70132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82214	0.89947	NaN	1	0	Median	29118000	17884000	11234000	15360000	8734100	6626000	10275000	7499900	2774900	0	0	0	3482700	1649600	1833100	14003	686	13285	84670;84671;84672;84673;84674	114403	114403			1	
ETAPGGTESQSLR	0	Unmodified	1331.6317	0.63172225	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			16.021	15.368	2	0.0001659	12746	160511_QHF_FH_JSI9i_1	106.4	86.623			0.75921	0.74989	6.5907	2	2	Median	0.96132	0.78567	NaN	1	1	Median	0.59959	0.71575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92063000	47916000	44147000	47820000	24173000	23647000	44243000	23743000	20500000	0	0	0	0	0	0	14004	3515	13286	84675;84676	114404;114405	114405			2	
ETAQAIKGMHIR	1	Acetyl (K)	1395.7293	0.72926823	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		2	1	1	48.838	39.266	3	0.00049122	21386	160513_QHF_FH_JSI11Kac_6	72.496	59.092			0.82961	0.95	41.268	4	0	Median	NaN	NaN	NaN	0	0	Median	0.87883	1.0515	3.546	2	0	Median	0.46086	0.44213	NaN	1	0	Median	0.81162	0.88007	NaN	1	0	Median	51695000	31905000	19790000	0	0	0	24175000	14751000	9423900	18629000	12414000	6214100	8891600	4739600	4152000	14005	1143	13287	84677;84678;84679;84680	114406;114407;114408;114409;114410	114406	998		5	
ETAQALK	1	Unmodified	759.41267	0.41266834	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.19	4	2	3		2	3				2	4	5	3	7.7016	4.8795	2	6.3205E-05	3183	160513_QHF_FH_JSI12Kac_3	124.34	0			0.97309	1.0104	9.2439	14	0	Median	1.2009	1.0114	1.6606	2	0	Median	0.83867	1.0033	2.7955	4	0	Median	1.039	1.0155	13.589	5	0	Median	0.86095	0.90393	9.5484	3	0	Plateau	17693000000	8605900000	9087300000	4369800000	1885000000	2484800000	4619300000	2326100000	2293200000	4454400000	2277800000	2176600000	4249600000	2117000000	2132700000	14006	5628	13288	84681;84682;84683;84684;84685;84686;84687;84688;84689;84690;84691;84692;84693;84694	114411;114412;114413;114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426	114425			16	
ETCLITFLLAGIECPR	0	Unmodified	1891.9536	0.95359044	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	98.548	90.356	3	5.7001E-05	49022	160513_QHF_FH_JSI12Kac_6	84.842	74.785			0.68005	0.64465	43.238	3	1	Median	NaN	NaN	NaN	0	0	Median	0.53747	0.63027	NaN	1	1	Median	0.68005	0.64465	NaN	1	0	Median	1.2775	1.3476	NaN	1	0	Median	225770000	130280000	95490000	0	0	0	68398000	46758000	21640000	80649000	49218000	31431000	76727000	34308000	42419000	14007	3213	13289	84695;84696;84697	114427;114428	114427			2	
ETDCGVHINAGPEIGVASTK	1	Unmodified	2053.9739	0.97386819	2242;608	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	no	no	0	0	0	0				By MS/MS	1	0	1												1	50.614	49.948	3	1.3727E-08	45304	160511_QHF_FH_JSI12i_1	102.6	92.642			1.1855	1.2128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1855	1.2128	NaN	1	0	Median	68577000	30044000	38534000	0	0	0	0	0	0	0	0	0	68577000	30044000	38534000	14008	2242;608	13290	84698	114429;114430;114431	114429			3	
ETDEVSNTK	1	Unmodified	1021.4564	0.45638365	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.7301	5.5586	2	2.9373E-07	3512	160511_QHF_FH_JSI12i_1	116.37	64.584			3.7565	4.0009	32.289	2	2	Median	NaN	NaN	NaN	0	0	Median	4.348	5.027	NaN	1	1	Median	3.2454	3.1842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	575410000	146020000	429390000	0	0	0	329600000	72821000	256780000	245810000	73195000	172620000	0	0	0	14009	5646	13291	84699;84700;84701;84702	114432;114433;114434;114435	114433			4	
ETDGSSQIK	1	Unmodified	963.4509	0.45090434	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	6.1386	5.9089	2	0.00014996	3934	160511_QHF_FH_JSI10i_1	89.355	32.074			0.87916	1.0409	8.0838	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87916	1.0409	NaN	1	0	Median	1.1585	1.1453	NaN	1	0	Median	0.93419	0.97531	NaN	1	0	Median	1367800000	667480000	700280000	0	0	0	488090000	251680000	236410000	412720000	161700000	251020000	466950000	254090000	212850000	14010	2087	13292	84703;84704;84705	114436;114437	114437			2	
ETDLLILFK	1	Unmodified	1090.6274	0.62741214	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.54	3	4	1					1	1	1	4	3	2	95.017	93.203	2	1.6335E-06	84301	160511_QHF_FH_JSI11i_2	131.06	113.68			0.92377	0.91651	13.279	10	1	Median	1.0362	0.87236	NaN	1	0	Median	0.7656	0.89921	18.931	4	1	Median	1.0012	0.99636	11.729	3	0	Median	0.84756	0.91786	6.6719	2	0	Median	439100000	227040000	212060000	64680000	32646000	32034000	139230000	75360000	63867000	124090000	60973000	63116000	111100000	58063000	53040000	14011	840	13293	84706;84707;84708;84709;84710;84711;84712;84713;84714;84715	114438;114439;114440;114441;114442;114443;114444;114445;114446;114447;114448;114449;114450;114451;114452;114453;114454;114455;114456;114457;114458;114459;114460;114461;114462	114454			24	
ETDLLLDDSLVSIFGNR	0	Unmodified	1905.9684	0.96837211	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	102.15	102.04	2	2.043E-12	90639	160511_QHF_FH_JSI10i_2	182.33	156.21			0.55121	0.63607	29.865	2	1	Median	NaN	NaN	NaN	0	0	Median	0.42827	0.51498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70945	0.78564	NaN	1	0	Median	145570000	96403000	49168000	0	0	0	42488000	29985000	12503000	0	0	0	103080000	66417000	36666000	14012	1335	13294	84716;84717	114463;114464	114464			2	
ETDLLLDDSLVSIFGNRR	0	Unmodified	2062.0695	0.069483134	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	1		By MS/MS			7	6.38		1	1						1		3			98.341	96.365	3	0.00069409	83970	160511_QHF_FH_JSI10i_3	59.003	35.672			0.53935	0.63814	22.699	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.53935	0.63814	22.699	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	492040000	309230000	182810000	0	0	0	492040000	309230000	182810000	0	0	0	0	0	0	14013	1335	13295	84718;84719;84720	114465;114466;114467	114465			1	
ETDLQELFRPFGSISR	0	Unmodified	1893.9585	0.95847612	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							3	2			96.569	96.071	3	1.2942E-05	79804	160511_QHF_FH_JSI10i_3	99.566	81.865			1.0254	0.93973	6.7799	5	2	Median	1.228	1.0095	8.9055	3	1	Plateau	0.77523	0.91723	3.427	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164620000	85192000	79429000	75321000	35009000	40312000	89300000	50183000	39117000	0	0	0	0	0	0	14014	570	13296	84721;84722;84723;84724;84725	114468;114469;114470;114471;114472;114473	114468			6	
ETDPLRR	0	Unmodified	885.46683	0.46682918	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	10.305	9.6511	3	0.03381	7221	160511_QHF_FH_JSI12i_2	30.185	0			0.79664	0.86621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79664	0.86621	NaN	1	1	Median	31160000	16957000	14203000	0	0	0	0	0	0	0	0	0	31160000	16957000	14203000	14015	1307	13297	84726	114474	114474			1	
ETDSIQSR	0	Unmodified	934.43559	0.43558863	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		6.5511	6.1743	2	0.008768	3972	160511_QHF_FH_JSI11i_1	56.659	33.768			0.75364	0.66392	27.621	2	0	Median	0.66533	0.54613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85367	0.80712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108400000	49955000	58441000	43314000	19821000	23493000	0	0	0	65082000	30134000	34948000	0	0	0	14016	475	13298	84727;84728	114475	114475			1	
ETDSPSTPGKDQR	1	Acetyl (K)	1458.6587	0.65866529	3281	Q7Z5J4	RAI1	Retinoic acid-induced protein 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	19.235	12.121	2	0.0031198	6611	160513_QHF_FH_JSI10Kac_2	69.979	60.026			0.95544	1.0668	9.3094	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85932	0.99885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0623	1.1394	NaN	1	0	Median	7324500	4162600	3161900	0	0	0	4354800	2377000	1977800	0	0	0	2969700	1785600	1184100	14017	3281	13299	84729;84730	114476;114477;114478;114479	114477	2819		4	
ETDSSSASAATPSK	1	Unmodified	1337.5947	0.59466805	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	4.47	4	2	4	1	3					3	5	3	3	8.761	6.0519	2	3.6524E-117	5651	160511_QHF_FH_JSI12i_1	278.37	250.36			0.94643	1.028	17.431	12	2	Median	1.6502	1.3678	26.692	2	1	Median	0.8689	1.0118	4.6273	4	1	Median	1.0579	1.0088	19.498	3	0	Median	0.9784	1.0363	7.5565	3	0	Median	3217800000	1546500000	1671300000	827130000	333390000	493740000	778840000	419000000	359840000	832600000	401200000	431410000	779260000	392930000	386330000	14018	1824	13300	84731;84732;84733;84734;84735;84736;84737;84738;84739;84740;84741;84742;84743;84744	114480;114481;114482;114483;114484;114485;114486;114487;114488;114489;114490;114491;114492;114493;114494;114495;114496;114497;114498	114485			19	
ETDVVNFDDIASSENLLHLTANRPK	1	Unmodified	2797.3883	0.38825109	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		91.105	91.105	4	1.829E-08	81243	160511_QHF_FH_JSI11i_3	71.143	64.111			1.0677	1.0029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0677	1.0029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58304000	27428000	30876000	0	0	0	0	0	0	58304000	27428000	30876000	0	0	0	14019	5664	13301	84745	114499;114500	114499			2	
ETDYPAGEDLSESGQVDK	1	Unmodified	1938.8331	0.83306042	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	40.401	39.771	2	5.8496E-44	35683	160511_QHF_FH_JSI10i_1	211.51	180.96			1.0373	1.1008	12.57	5	2	Median	1.3294	1.1008	NaN	1	0	Median	1.0373	1.253	NaN	1	0	Median	0.99522	0.97265	NaN	1	0	Median	1.0695	1.1033	17.639	2	2	Median	358160000	185890000	172270000	45953000	20162000	25791000	81330000	50002000	31328000	86006000	41211000	44795000	144870000	74511000	70360000	14020	404	13302	84746;84747;84748;84749;84750;84751	114501;114502;114503;114504;114505;114506;114507;114508;114509;114510	114507			10	
ETEELMAWMR	0	Unmodified	1294.5686	0.56859341	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	73.731	73.129	2	1.716E-09	66729	160511_QHF_FH_JSI12i_1	132.76	124.29			0.90143	0.93574	15.359	7	0	Median	1.3243	1.1012	23.032	2	0	Median	0.76879	0.91123	16.734	2	0	Median	0.95919	0.95276	11.68	2	0	Median	0.87659	0.89647	NaN	1	0	Median	733900000	380670000	353230000	155950000	81402000	74551000	259890000	150150000	109740000	260690000	119100000	141590000	57365000	30021000	27344000	14021	2328	13303	84752;84753;84754;84755;84756;84757;84758	114511;114512;114513;114514;114515;114516;114517;114518;114519;114520;114521	114514			9	
ETEELVGSNSSK	1	Unmodified	1278.5939	0.59393976	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	16.376	15.622	2	0.00019393	12891	160511_QHF_FH_JSI9i_1	96.756	43.667			0.35207	0.3189	34.46	2	2	Median	0.49741	0.4069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2492	0.24994	NaN	1	1	Median	40317000	31762000	8554600	15310000	9988500	5321100	0	0	0	0	0	0	25007000	21774000	3233500	14022	5118	13304	84759;84760;84761	114522;114523;114524	114523			3	
ETEGDVTSVK	1	Unmodified	1063.5033	0.50333384	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.17	4	3	1		2	2				1	4	5	2	16.531	13.568	2	2.2811E-07	11581	160511_QHF_FH_JSI10i_1	115.71	71.907			0.99609	1.1129	14.664	11	0	Median	1.3413	1.1248	NaN	1	0	Median	0.96624	1.1706	5.6727	4	0	Median	1.0008	0.9715	9.8613	4	0	Median	0.89156	0.96528	27.52	2	0	Median	10051000000	4920200000	5131300000	1991200000	935590000	1055600000	2742300000	1336800000	1405500000	2493600000	1078500000	1415100000	2824300000	1569300000	1255000000	14023	1721	13305	84762;84763;84764;84765;84766;84767;84768;84769;84770;84771;84772;84773	114525;114526;114527;114528;114529;114530;114531;114532;114533;114534;114535;114536;114537;114538;114539	114532			15	
ETEGDVTSVKDAK	2	Acetyl (K)	1419.6729	0.67291837	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1			By MS/MS	By matching	12	0					2							1	1	37.451	28.727	2	0.0034449	12757	160513_QHF_FH_JSI11Kac_2	68.536	60.003			0.51609	0.51478	52.174	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38375	0.35596	NaN	1	0	Median	0.69407	0.74446	NaN	1	0	Median	6234100	4534900	1699300	0	0	0	0	0	0	3268900	2536900	732010	2965300	1998000	967240	14024	1721	13306	84774;84775	114540	114540	1732		1	
ETEGGTVLTATTSELEAINK	1	Unmodified	2063.027	0.027009197	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		81.978	81.621	2	1.4474E-05	74364	160511_QHF_FH_JSI11i_1	80.522	66.558			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14025	5479	13307	84776	114541	114541			1	
ETEMALAK	1	Unmodified	891.43717	0.43716853	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	20.918	20.607	2	0.0047856	18066	160511_QHF_FH_JSI12i_1	66.073	31.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14026	1298	13308	84777;84778	114542;114543	114543			2	
ETENDDLTNVIQK	1	Unmodified	1517.7209	0.72093119	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.31	8				3	1				2	2	4	4	47.831	46.165	2;3	8.2389E-117	41972	160511_QHF_FH_JSI12i_1	276.95	247.21			0.94142	0.92615	7.8932	9	0	Median	1.0517	0.87435	2.9588	2	0	Median	0.80449	0.94551	8.6287	2	0	Median	0.938	0.92615	10.12	3	0	Median	0.95301	1.0085	2.3897	2	0	Median	4424700000	2328000000	2096700000	823840000	379430000	444410000	1261600000	697290000	564340000	1186600000	554030000	632590000	1152600000	697220000	455370000	14027	686	13309	84779;84780;84781;84782;84783;84784;84785;84786;84787;84788;84789;84790	114544;114545;114546;114547;114548;114549;114550;114551;114552;114553;114554;114555;114556;114557;114558;114559	114550			16	
ETENDDVTNVIQK	1	Unmodified	1503.7053	0.70528113	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.472	36.776	2	1.0429E-07	32457	160511_QHF_FH_JSI9i_1	188.06	162.5			5.0506	5.3772	107.48	3	3	Median	5.0505	4.1498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30.823	29.984	NaN	1	1	Median	5.0506	5.3772	NaN	1	1	Median	1897100000	116470000	1780600000	315310000	31504000	283810000	0	0	0	1245200000	56545000	1188600000	336600000	28421000	308180000	14028	287	13310	84791;84792;84793	114560;114561;114562;114563	114563			4	
ETENTAYK	1	Unmodified	954.42944	0.42944062	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.7266	3.4288	2	1.2317E-06	4000	160511_QHF_FH_JSI10i_1	149.4	120.06			0.86002	0.83168	16.776	7	0	Median	0.94896	0.77821	NaN	1	0	Median	0.83562	0.98296	32.53	2	0	Median	0.85509	0.82349	1.3999	2	0	Median	0.85733	0.92044	10.415	2	0	Median	689400000	357410000	332000000	138580000	66435000	72141000	173850000	98138000	75710000	166650000	84956000	81690000	210330000	107880000	102450000	14029	2902	13311	84794;84795;84796;84797;84798;84799;84800	114564;114565;114566;114567;114568;114569;114570;114571	114568			8	
ETEQLEIK	1	Unmodified	988.50769	0.50769094	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.187	25.289	2	0.0023898	21757	160511_QHF_FH_JSI9i_1	80.455	50.27			0.91314	0.84383	29.739	2	1	Median	0.83611	0.6838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99728	1.0413	NaN	1	1	Median	324120000	174100000	150020000	128270000	73794000	54475000	0	0	0	0	0	0	195850000	100310000	95545000	14030	4337	13312	84801;84802	114572;114573;114574	114574			3	
ETESEAEDNLDDLEK	1	Unmodified	1735.7272	0.72719836	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	46.896	46.154	2	2.4918E-98	41553	160511_QHF_FH_JSI10i_1	264.84	250.38			0.67574	0.9796	53.816	4	1	Linear	0.82959	0.66623	NaN	1	0	Median	0.75964	0.90484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4813	1.5797	56.349	2	1	Median	161700000	78711000	82985000	40477000	21846000	18631000	60671000	29765000	30906000	0	0	0	60548000	27099000	33448000	14031	3463	13313	84803;84804;84805;84806;84807;84808	114575;114576;114577;114578;114579;114580;114581;114582;114583	114581			9	
ETEVGDPAGNELAEPEAK	1	Unmodified	1854.8483	0.84831655	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.084	41.623	2	4.1037E-23	37613	160511_QHF_FH_JSI11i_1	216.46	206.95			0.9457	0.9762	13.323	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9457	1.122	NaN	1	0	Median	0.87983	0.85964	NaN	1	0	Median	0.9526	0.9762	NaN	1	0	Median	156280000	78349000	77929000	0	0	0	43109000	23052000	20057000	55037000	26955000	28083000	58132000	28343000	29789000	14032	4083	13314	84809;84810;84811;84812	114584;114585;114586;114587;114588;114589;114590	114585			7	
ETEWLFGMDEGRK	1	Unmodified	1596.7242	0.72424243	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		66.097	65.536	2	0.050828	57167	160511_QHF_FH_JSI11i_2	48.44	21.926			1.1021	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1021	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16651000	7004000	9647100	0	0	0	0	0	0	16651000	7004000	9647100	0	0	0	14033	3560	13315	84813	114591	114591			1	
ETFASTASQLHSNVVNYVQQIVAPK	1	Unmodified	2730.3977	0.39769356	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.35		4	8						3	6	4	2	3	98.189	96.6	3;4	1.1372E-172	46553	160513_QHF_FH_JSI10Kac_6	279.44	265.03			0.86903	0.88843	10.417	15	5	Median	1.1193	0.90329	13.205	6	2	Median	0.80081	0.96678	9.5502	4	1	Median	0.95132	0.90499	3.5656	2	0	Median	0.83368	0.86792	2.2047	3	2	Plateau	3372800000	1812000000	1560800000	1019800000	501880000	517880000	896610000	534730000	361880000	978510000	515070000	463440000	477900000	260280000	217620000	14034	4715	13316	84814;84815;84816;84817;84818;84819;84820;84821;84822;84823;84824;84825;84826;84827;84828	114592;114593;114594;114595;114596;114597;114598;114599;114600;114601;114602;114603;114604;114605;114606;114607;114608;114609;114610;114611;114612;114613	114613			22	
ETFDPEK	1	Unmodified	864.38651	0.38651317	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	20.43	17.248	2	0.0086222	14865	160511_QHF_FH_JSI12i_1	82.671	56.562			1.3872	1.4395	4.7027	5	0	Median	NaN	NaN	NaN	0	0	Median	1.293	1.5221	5.2546	2	0	Median	1.4392	1.4102	0.32538	2	0	Median	1.3872	1.4395	NaN	1	0	Median	1495700000	680070000	815630000	0	0	0	509080000	238380000	270700000	462050000	207870000	254180000	524570000	233820000	290750000	14035	1805	13317	84829;84830;84831;84832;84833	114614;114615;114616;114617;114618;114619;114620	114616			7	
ETFEDSNLIPK	1	Unmodified	1291.6296	0.62959699	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	57.127	56.544	2	1.9394E-06	51131	160511_QHF_FH_JSI10i_1	121.5	85.121			1.0771	1.0627	20.77	7	7	Median	1.6191	1.3192	NaN	1	1	Median	0.86539	1.0154	31.267	2	2	Median	0.95226	0.93063	18.763	2	2	Median	0.95076	0.97381	19.662	2	2	Median	913240000	440900000	472340000	133250000	52186000	81067000	229960000	101550000	128410000	283710000	150180000	133530000	266310000	136980000	129330000	14036	900	13318	84834;84835;84836;84837;84838;84839;84840	114621;114622;114623;114624;114625;114626;114627	114626			7	
ETFGEMSDGDVQEQLR	0	Unmodified	1839.7945	0.79450684	2132	P84157	MXRA7	Matrix-remodeling-associated protein 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	56.88	56.221	2	2.382E-11	50792	160511_QHF_FH_JSI10i_1	110.29	96.135			0.89322	0.88608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89322	0.88608	NaN	1	1	Median	10460000	7811200	2649300	0	0	0	0	0	0	0	0	0	10460000	7811200	2649300	14037	2132	13319	84841;84842	114628;114629	114629			2	
ETFGVNNAVYGIDAMNPSSR	0	Unmodified	2140.9848	0.98476723	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	4	2	2	77.244	76.755	2;3	1.9593E-138	68275	160511_QHF_FH_JSI9i_1	285.59	243.5			1.0048	1.0106	11.255	8	1	Median	1.2713	1.0384	NaN	1	0	Median	0.865	1.0109	18.735	3	1	Median	1.0332	1.0092	0.63356	2	0	Median	0.95709	0.9843	3.6748	2	0	Median	593030000	324190000	268840000	73738000	29634000	44104000	197900000	117580000	80321000	200180000	112700000	87478000	121210000	64272000	56940000	14038	571	13320	84843;84844;84845;84846;84847;84848;84849;84850;84851	114630;114631;114632;114633;114634;114635;114636;114637;114638;114639;114640	114638			9	
ETFGVNNAVYGIDAMNPSSRDDFTEFGK	1	Unmodified	3080.3822	0.38217943	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	91.594	91.175	3	1.408E-58	80270	160511_QHF_FH_JSI11i_2	199.1	188.3			1.0215	1.0815	5.1595	7	0	Median	1.2714	1.0815	NaN	1	0	Median	0.90016	1.0693	5.0061	2	0	Median	1.0216	1.006	0.99123	2	0	Median	1.0312	1.1232	3.1182	2	0	Median	899460000	461730000	437730000	143560000	68581000	74977000	259250000	147460000	111790000	265300000	129110000	136180000	231350000	116570000	114780000	14039	571	13321	84852;84853;84854;84855;84856;84857;84858	114641;114642;114643;114644;114645;114646;114647;114648;114649;114650;114651;114652;114653;114654;114655;114656;114657;114658;114659;114660;114661;114662;114663;114664;114665;114666;114667;114668;114669;114670;114671;114672	114667			32	
ETFGVNNAVYGIDAMNPSSRDDFTEFGK	1	Oxidation (M)	3096.3771	0.37709406	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	1	1				By MS/MS	2	0		1											1	81.915	80.79	3	4.6598E-05	69724	160511_QHF_FH_JSI12i_2	48.115	41.82			1.0117	1.1063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0117	1.1063	NaN	1	0	Median	19149000	8148400	11000000	0	0	0	0	0	0	0	0	0	19149000	8148400	11000000	14040	571	13321	84859	114673;114674	114674		215	2	
ETFHLVSK	1	Unmodified	959.50763	0.50763136	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	28.668	27.581	3	0.0034883	23685	160511_QHF_FH_JSI9i_2	46.001	17.275			1.061	0.90256	55.873	3	1	Median	1.061	0.90256	NaN	1	0	Median	0.34151	0.41851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0918	1.2408	NaN	1	0	Median	108570000	59312000	49259000	41008000	19415000	21593000	31543000	21851000	9692100	0	0	0	36020000	18047000	17974000	14041	3846	13322	84860;84861;84862	114675;114676;114677	114676			3	
ETFIDSGVMSAIK	1	Unmodified	1396.6908	0.69081704	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	76.992	75.233	2	1.5916E-05	67426	160511_QHF_FH_JSI9i_1	122.69	110.07			0.96435	0.89234	14.493	9	4	Median	1.0261	0.86266	4.7843	2	1	Median	0.76051	0.88993	17.485	3	1	Plateau	1.0083	0.98283	18.995	2	1	Median	0.95076	0.99532	18.022	2	1	Median	489870000	270170000	219700000	101780000	48778000	53004000	146690000	87053000	59635000	126480000	70244000	56240000	114920000	64096000	50820000	14042	4246	13323	84863;84864;84865;84866;84867;84868;84869;84870;84871	114678;114679;114680;114681;114682;114683;114684;114685;114686;114687;114688	114684			10	
ETFLTSPEELYR	0	Unmodified	1483.7195	0.71947463	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	3	2	2	69.63	68.987	2	1.4169E-41	59334	160511_QHF_FH_JSI12i_2	201.33	182.55			0.9718	1.0109	13.329	8	6	Median	1.265	1.0161	NaN	1	0	Median	0.80901	1.0058	10.485	3	3	Median	0.8633	0.85639	18.696	2	2	Median	1.0196	1.1045	2.821	2	1	Median	2267600000	1282400000	985270000	241690000	118100000	123590000	852390000	484240000	368160000	705820000	432320000	273490000	467750000	247710000	220030000	14043	694	13324	84872;84873;84874;84875;84876;84877;84878;84879	114689;114690;114691;114692;114693;114694;114695;114696;114697;114698;114699	114691			11	
ETFQVLNMYGK	1	Unmodified	1328.6435	0.64347291	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	67.835	67.2	2	7.7736E-14	59656	160511_QHF_FH_JSI10i_2	138.98	92.817			2.4242	2.5832	117.44	6	5	Median	2.1708	1.8409	157.22	2	2	Median	1.3774	1.6108	NaN	1	0	Median	1.7935	1.7694	120.31	2	2	Median	11.309	11.633	NaN	1	1	Median	506190000	109720000	396480000	86640000	27821000	58819000	47615000	18360000	29255000	181890000	48874000	133010000	190050000	14661000	175390000	14044	116	13325	84880;84881;84882;84883;84884;84885;84886	114700;114701;114702;114703;114704;114705;114706;114707;114708	114708			9	
ETFSGKEK	2	Acetyl (K)	966.46583	0.46582612	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			21.07	13.672	2	0.043656	8709	160513_QHF_FH_JSI10Kac_3	49.96	12.985			1.099	1.2771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.099	1.2771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6039900	2980700	3059200	0	0	0	6039900	2980700	3059200	0	0	0	0	0	0	14045	3004	13326	84887	114709	114709			1	
ETFTTEERK	1	Unmodified	1139.5459	0.54586736	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	10.518	10.045	2	0.0031803	7976	160511_QHF_FH_JSI10i_2	61.679	38.25			0.84879	1.046	36.128	3	2	Median	NaN	NaN	NaN	0	0	Median	0.84879	1.046	NaN	1	0	Median	0.59258	0.60465	NaN	1	1	Median	1.1431	1.1957	NaN	1	1	Median	57010000	35188000	21822000	0	0	0	19981000	11215000	8766900	20446000	14937000	5509500	16583000	9037000	7545900	14046	4117	13327	84888;84889;84890	114710;114711;114712	114712			3	
ETFYVGAAK	1	Unmodified	984.49165	0.49164694	5044	Q9NVQ4	FAIM	Fas apoptotic inhibitory molecule 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		42.619	32.483	2	0.035798	19633	160513_QHF_FH_JSI11Kac_4	53.166	19.37			1.237	1.2149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.237	1.2149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2932800	1190900	1741900	0	0	0	0	0	0	2932800	1190900	1741900	0	0	0	14047	5044	13328	84891	114713	114713			1	
ETGANLAICQWGFDDEANHLLLQNNLPAVR	0	Unmodified	3378.6415	0.64152244	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	101.12	101.03	3	4.3113E-122	87759	160511_QHF_FH_JSI12i_3	266.17	255.93			1.5593	1.6431	2.1706	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5593	1.6431	2.1706	2	1	Median	263000000	94634000	168370000	0	0	0	0	0	0	0	0	0	263000000	94634000	168370000	14048	1630	13329	84892;84893	114714;114715	114715			2	
ETGDPGGQLVLAGDPR	0	Unmodified	1580.7794	0.77944912	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	48.5	47.999	2	1.5264E-12	42604	160511_QHF_FH_JSI9i_1	115.83	96.37			6.4589	6.5727	23.666	3	3	Plateau	NaN	NaN	NaN	0	0	Median	6.6855	7.9008	NaN	1	1	Median	5.6426	5.4678	NaN	1	1	Median	4.8965	5.0796	NaN	1	1	Median	1412600000	142710000	1269900000	0	0	0	549470000	54619000	494850000	370160000	49336000	320830000	492950000	38753000	454200000	14049	4856	13330	84894;84895;84896;84897;84898	114716;114717;114718;114719;114720	114720			5	
ETGEHLVHVK	1	Unmodified	1147.5986	0.59857163	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		11	7						3	4	4	5	8	15.187	13.847	2;3;4	7.3017E-11	11396	160511_QHF_FH_JSI12i_2	144.09	105.13			0.94026	0.95498	32.175	18	4	Median	1.2184	1.0439	4.3521	2	0	Median	0.80391	0.93247	25.662	4	0	Median	0.96589	0.96165	33.415	5	1	Median	0.83875	0.93883	42.024	7	3	Median	1710100000	805610000	904510000	176100000	83352000	92744000	387340000	195690000	191640000	536890000	241420000	295470000	609790000	285150000	324640000	14050	1192	13331	84899;84900;84901;84902;84903;84904;84905;84906;84907;84908;84909;84910;84911;84912;84913;84914;84915;84916;84917;84918;84919	114721;114722;114723;114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736;114737;114738;114739;114740;114741;114742;114743;114744;114745;114746;114747;114748;114749	114725			26	
ETGEHLVHVKK	2	Unmodified	1275.6935	0.69353465	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.833	10.928	3	0.00036205	8382	160511_QHF_FH_JSI12i_3	63.212	57.369			1.7468	1.7542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7468	1.7542	NaN	1	0	Median	87192000	25486000	61705000	0	0	0	0	0	0	0	0	0	87192000	25486000	61705000	14051	1192	13332	84920	114750	114750			1	
ETGFHLTTTNQGASAAGPGFSLK	1	Unmodified	2291.1182	0.11822424	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	65.118	64.599	3	1.3266E-19	57520	160511_QHF_FH_JSI11i_3	143.09	128.63			1.006	0.9791	17.246	4	3	Median	NaN	NaN	NaN	0	0	Median	1.07	1.2162	NaN	1	1	Median	0.97684	0.90154	NaN	1	0	Median	0.91183	0.9369	17.901	2	2	Median	416960000	214720000	202240000	0	0	0	11833000	3466100	8367200	135860000	73492000	62369000	269270000	137760000	131510000	14052	1187	13333	84921;84922;84923;84924	114751;114752;114753;114754;114755	114752			5	
ETGFSHSQITR	0	Unmodified	1261.6051	0.60511357	4299	Q99653	CHP1	Calcineurin B homologous protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	15.563	15.594	2;3	1.0339E-06	12325	160511_QHF_FH_JSI12i_3	93.928	84.495			1.1445	1.3456	27.919	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2162	1.1495	5.958	2	1	Median	0.85237	0.87371	39.373	2	1	Median	219570000	95586000	123980000	0	0	0	0	0	0	137130000	53946000	83181000	82440000	41640000	40800000	14053	4299	13334	84925;84926;84927;84928;84929	114756;114757;114758;114759;114760	114757			5	
ETGLMYSIMVHALR	0	Unmodified	1619.8164	0.81636868	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.12		2	11						6	8	6	3	2	90.235	87.166	2;3	6.7618E-97	42213	160513_QHF_FH_JSI9Kac_6	255.52	223.26			0.86823	0.89048	36.433	18	3	Median	1.4336	1.2448	43.634	7	1	Median	0.7349	0.88559	19.401	6	1	Median	1.1473	1.0708	40.084	3	1	Plateau	0.85578	0.88379	37.883	2	0	Median	10511000000	4679700000	5831300000	3583200000	1377900000	2205300000	3968100000	1970700000	1997400000	1940500000	823410000	1117100000	1019300000	507730000	511550000	14054	2094	13335	84930;84931;84932;84933;84934;84935;84936;84937;84938;84939;84940;84941;84942;84943;84944;84945;84946;84947;84948	114761;114762;114763;114764;114765;114766;114767;114768;114769;114770;114771;114772;114773;114774;114775;114776;114777;114778;114779;114780;114781;114782;114783;114784;114785;114786;114787;114788;114789;114790;114791;114792;114793;114794;114795	114786			35	
ETGLMYSIMVHALR	0	2 Oxidation (M)	1651.8062	0.80619792	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	63.474	56.876	3	6.4782E-12	29764	160513_QHF_FH_JSI12Kac_6	128.22	114.48			1.0152	1.0583	11.024	6	0	Median	1.4462	1.2194	3.6199	2	0	Median	0.87328	0.99779	11.628	2	0	Median	1.052	1.0338	NaN	1	0	Median	0.97968	1.0326	NaN	1	0	Median	289580000	143520000	146050000	89571000	40130000	49441000	98775000	51777000	46998000	25825000	13364000	12460000	75406000	38252000	37153000	14055	2094	13335	84949;84950;84951;84952;84953;84954	114796;114797;114798;114799;114800;114801;114802;114803	114801		1762;1763	8	
ETGLMYSIMVHALR	0	Oxidation (M)	1635.8113	0.8112833	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	74.908	66.44	3	0.00021012	35372	160513_QHF_FH_JSI9Kac_6	76.196	65.857			0.87519	0.98671	12.062	4	1	Median	1.2518	1.0945	NaN	1	0	Median	0.84907	0.99883	NaN	1	0	Median	0.83846	0.81998	NaN	1	0	Median	0.90211	0.97475	NaN	1	1	Median	151970000	79344000	72628000	36410000	15142000	21268000	48984000	28519000	20465000	40496000	20950000	19547000	26082000	14734000	11349000	14056	2094	13335	84955;84956;84957;84958;84959	114804;114805;114806;114807;114808	114805		1762;1763	4	
ETGMESVIEAVAHFK	1	Unmodified	1646.7974	0.79740737	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	100.2	100.05	3	1.9402E-05	88365	160511_QHF_FH_JSI10i_2	86.944	76			0.71104	0.84396	12.423	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73609	0.92145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68684	0.77299	NaN	1	0	Median	23353000	14354000	8999700	0	0	0	14080000	8702600	5377000	0	0	0	9273900	5651100	3622800	14057	3430	13336	84960;84961;84962;84963	114809;114810;114811;114812;114813	114812			5	
ETGNHYAMK	1	Unmodified	1049.46	0.46002924	1121	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		7								2	2	1	2	7.739	7.2837	2;3	0.00057387	5294	160511_QHF_FH_JSI10i_2	64.711	46.575			1.0272	1.0192	15.005	7	0	Median	1.2602	1.0742	8.8655	2	0	Median	0.70362	0.87523	8.6867	2	0	Median	0.97534	1.0192	NaN	1	0	Median	1.08	1.2269	5.6303	2	0	Median	541240000	281650000	259580000	132440000	57413000	75027000	152990000	99541000	53445000	77852000	46469000	31384000	177960000	78232000	99727000	14058	1121	13337	84964;84965;84966;84967;84968;84969;84970	114814;114815;114816;114817;114818	114817			4	
ETGQEHELIESMPLLEWFANNYKK	2	Unmodified	2905.3956	0.39564465	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.077	89.357	4	1.9616E-13	51479	160513_QHF_FH_JSI10Kac_6	93.397	86.444			0.74836	0.88943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74836	0.88943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161640000	100190000	61453000	0	0	0	161640000	100190000	61453000	0	0	0	0	0	0	14059	2010	13338	84971	114819;114820	114819			2	
ETGQQIGDEVR	0	Unmodified	1230.584	0.58404378	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	20.091	19.582	2	3.3446E-06	16856	160511_QHF_FH_JSI10i_1	111.86	89.618			1.03	1.013	5.7076	4	0	Median	1.2192	1.0117	NaN	1	0	Median	0.86681	1.0142	NaN	1	0	Median	1.1562	1.0879	NaN	1	0	Median	0.91761	0.94595	NaN	1	0	Median	242940000	121110000	121830000	57680000	27216000	30464000	68594000	38485000	30109000	64411000	29601000	34810000	52257000	25812000	26446000	14060	4609	13339	84972;84973;84974;84975	114821;114822;114823;114824;114825	114824			5	
ETGTEHSPGVQPADVK	1	Unmodified	1650.7849	0.78492843	4764	Q9H7C9	AAMDC	Mth938 domain-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.841	18.344	3	0.00018093	15872	160511_QHF_FH_JSI12i_1	75.463	64.518			1.0891	1.1563	33.916	4	1	Median	0.94081	0.77366	NaN	1	0	Median	1.0197	1.1842	NaN	1	0	Median	1.1633	1.129	NaN	1	0	Median	1.6901	1.7728	NaN	1	1	Median	251580000	110090000	141480000	53247000	24119000	29128000	71661000	33014000	38647000	80946000	37331000	43615000	45722000	15629000	30093000	14061	4764	13340	84976;84977;84978;84979	114826;114827;114828;114829	114827			4	
ETGVDLTK	1	Unmodified	861.44436	0.4443624	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				2	2	3	2	22.752	17.232	2	0.00011874	16931	160511_QHF_FH_JSI10i_1	127.56	59.584			1.1252	1.0877	14.26	9	0	Median	1.3666	1.1308	15.677	2	0	Median	0.7658	0.91785	13.134	2	0	Median	1.1893	1.1581	16.625	3	0	Median	1.0585	1.1417	6.8523	2	0	Median	8900600000	4588000000	4312600000	2143600000	828560000	1315000000	2180000000	1345600000	834340000	2402300000	1241900000	1160500000	2174700000	1171900000	1002800000	14062	1480	13341	84980;84981;84982;84983;84984;84985;84986;84987;84988	114830;114831;114832;114833;114834;114835;114836;114837;114838;114839;114840;114841;114842	114837			13	
ETGVDLTKDNMALQR	1	Acetyl (K);Oxidation (M)	1747.8411	0.8410631	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	57.084	47.688	2	2.0931E-11	25349	160513_QHF_FH_JSI12Kac_3	131.37	117.46			1.0155	0.83176	18.259	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71193	0.83176	NaN	1	0	Median	0.77925	0.79568	NaN	1	0	Median	1.0155	1.1135	NaN	1	0	Median	29600000	15966000	13634000	0	0	0	5793700	3570600	2223200	6091900	3556500	2535400	17715000	8839200	8875300	14063	1480	13342	84989;84990;84991	114843;114844;114845;114846;114847	114846	1473	1152	5	
ETGVDLTKDNMALQR	1	Acetyl (K)	1731.8461	0.84614848	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	67.97	58.753	3	0.00037589	30183	160513_QHF_FH_JSI12Kac_3	93.494	76.092			17.2	18.722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17.2	18.722	NaN	1	1	Median	3464400	194090	3270300	0	0	0	0	0	0	0	0	0	3464400	194090	3270300	14064	1480	13342	84992	114848	114848	1473		1	
ETGVHSLLIDPLTQR	0	Unmodified	1677.905	0.90498399	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.805	70.513	3	0.0024401	60620	160511_QHF_FH_JSI12i_2	46.926	39.887			0.79138	0.89152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79138	0.89152	NaN	1	0	Median	50180000	27846000	22334000	0	0	0	0	0	0	0	0	0	50180000	27846000	22334000	14065	3306	13343	84993	114849	114849			1	
ETGVPIAGR	0	Unmodified	898.48723	0.48723027	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	24.934	21.503	2	0.0026956	19150	160511_QHF_FH_JSI12i_1	63.565	35.391			1.0469	1.1533	9.8079	6	0	Median	1.5653	1.2757	NaN	1	0	Median	0.94097	1.1123	10.686	2	0	Median	1.1394	1.1146	14.509	2	0	Median	1.0467	1.1089	NaN	1	0	Median	2325600000	1092100000	1233500000	436640000	194690000	241950000	519940000	242840000	277090000	615450000	296670000	318780000	753620000	357920000	395700000	14066	1004	13344	84994;84995;84996;84997;84998;84999	114850;114851;114852	114850			3	
ETGVQVYNSLTGR	0	Unmodified	1422.7103	0.71030693	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	52.364	51.548	2	2.075E-05	44042	160511_QHF_FH_JSI12i_2	147.26	114.65			0.9542	1.03	18.964	4	1	Median	NaN	NaN	NaN	0	0	Median	0.75211	0.90518	13.696	2	1	Median	1.0709	1.0637	NaN	1	0	Median	1.1622	1.3015	NaN	1	0	Median	314210000	170070000	144130000	0	0	0	154840000	80472000	74367000	87303000	44096000	43207000	72064000	45506000	26558000	14067	4819	13345	85000;85001;85002;85003	114853;114854;114855;114856	114853			4	
ETGVQVYNSLTGRK	1	Unmodified	1550.8053	0.80526994	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			45.311	43.755	3	0.017891	36469	160511_QHF_FH_JSI10i_3	48.323	27.738			0.8481	0.9728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8481	0.9728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49738000	32213000	17524000	0	0	0	49738000	32213000	17524000	0	0	0	0	0	0	14068	4819	13346	85004	114857	114857			0	
ETGWASFSEFTSSLSTK	1	Unmodified	1863.8527	0.85267365	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	93.897	93.364	2	0.0408	80476	160511_QHF_FH_JSI12i_2	52.576	42.921			0.76288	0.80113	9.7732	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73644	0.74764	NaN	1	0	Median	0.79026	0.85845	NaN	1	0	Median	31746000	16951000	14794000	0	0	0	0	0	0	19229000	10963000	8266400	12516000	5988400	6528000	14069	2887	13347	85005;85006	114858	114858			1	
ETGYPLAVK	1	Unmodified	976.52295	0.52294707	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.841	35.233	2	0.0071369	30969	160511_QHF_FH_JSI9i_1	61.962	43.927			0.92282	0.93386	17.522	4	0	Median	1.1441	0.94916	NaN	1	0	Median	0.78629	0.91881	NaN	1	0	Median	1.0831	1.0482	NaN	1	0	Median	0.65385	0.69632	NaN	1	0	Median	1618600000	753660000	864920000	361790000	120850000	240940000	385800000	205770000	180030000	532500000	267180000	265310000	338490000	159850000	178630000	14070	1573	13348	85007;85008;85009;85010	114859;114860;114861;114862	114862			4	
ETGYTELVK	1	Unmodified	1038.5233	0.523341	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	36.455	33.928	2	5.8402E-06	30347	160511_QHF_FH_JSI10i_1	114.28	58.605			0.9444	1.0312	18.346	5	0	Median	0.89925	0.73288	NaN	1	0	Median	0.9444	1.1101	NaN	1	0	Median	0.97194	0.94721	12.008	2	0	Median	1.0612	1.1276	NaN	1	0	Median	1399100000	589710000	809430000	273470000	115230000	158240000	356350000	113800000	242560000	343540000	129890000	213650000	425780000	230790000	194990000	14071	2307	13349	85011;85012;85013;85014;85015	114863;114864;114865;114866;114867;114868;114869;114870	114868			8	
ETGYTYILPK	1	Unmodified	1183.6125	0.61249036	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	56.172	53.501	2	1.082E-07	47553	160511_QHF_FH_JSI9i_1	138.98	112.59			1.0416	1.0732	14.878	5	1	Median	1.3308	1.0732	NaN	1	0	Median	0.76463	0.88073	17.815	2	1	Median	1.1552	1.1117	NaN	1	0	Median	1.0416	1.0959	NaN	1	0	Median	1083300000	553740000	529550000	263800000	114010000	149790000	241410000	144030000	97379000	331720000	173060000	158650000	246360000	122630000	123730000	14072	3101	13350	85016;85017;85018;85019;85020	114871;114872;114873;114874;114875;114876	114875			6	
ETGYVVERPSTTK	1	Unmodified	1465.7413	0.7412727	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	21.333	20.822	2;3	1.4348E-05	17471	160511_QHF_FH_JSI11i_3	117.07	105.86			0.95038	0.9434	22.884	10	1	Median	1.0157	0.88971	6.5079	2	0	Median	0.95714	1.1614	6.1946	2	0	Median	1.2804	1.2402	22.539	3	0	Plateau	0.81202	0.80851	23.863	3	1	Median	1453600000	759010000	694550000	213410000	108040000	105370000	277250000	141010000	136250000	696540000	356610000	339930000	266360000	153350000	113000000	14073	5124	13351	85021;85022;85023;85024;85025;85026;85027;85028;85029;85030	114877;114878;114879;114880;114881;114882;114883;114884;114885;114886;114887;114888;114889;114890	114879			14	
ETHADLWPAK	1	Unmodified	1166.572	0.57202253	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	32.94	32.031	2;3	2.3114E-05	27966	160511_QHF_FH_JSI9i_2	98.033	90.465			0.76329	0.89405	21.46	7	0	Median	0.92297	0.79445	NaN	1	0	Median	0.74365	0.90318	1.4367	2	0	Median	0.75869	0.76627	2.6603	2	0	Median	1.1119	1.2478	3.2898	2	0	Median	805970000	380480000	425490000	55916000	27078000	28838000	247140000	109240000	137900000	310600000	151080000	159520000	192310000	93084000	99227000	14074	1438	13352	85031;85032;85033;85034;85035;85036;85037	114891;114892;114893;114894;114895;114896;114897;114898;114899;114900;114901;114902	114895			12	
ETHASAPVK	1	Unmodified	938.48214	0.48214489	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	5.7746	5.3763	2;3	0.00058348	3281	160511_QHF_FH_JSI11i_2	82.426	63.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14075	1785	13353	85038;85039;85040	114903;114904;114905	114905			3	
ETHFDTQNNISTMSAEWVSK	1	Unmodified	2324.0379	0.037925009	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	4	2	1	67.919	67.086	3	9.4513E-07	58649	160511_QHF_FH_JSI11i_2	99.059	90.35			1.284	1.3192	33.69	6	6	Median	1.7994	1.5121	NaN	1	1	Median	0.95097	1.1621	60.529	2	2	Median	1.0162	1.0158	22.912	2	2	Median	1.3772	1.4571	NaN	1	1	Median	152540000	76801000	75742000	22630000	8282400	14347000	54171000	30949000	23221000	52246000	26154000	26091000	23497000	11415000	12082000	14076	4681	13354	85041;85042;85043;85044;85045;85046;85047;85048	114906;114907;114908;114909;114910;114911;114912;114913	114908			8	
ETHFPFAIR	0	Unmodified	1116.5716	0.5716286	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	55.828	55.233	3	0.00053311	47262	160511_QHF_FH_JSI12i_3	65.465	58.73			0.96574	0.92449	22.611	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1968	1.3875	NaN	1	1	Median	1.0718	0.99231	NaN	1	0	Median	0.87017	0.90218	NaN	1	0	Median	83137000	40514000	42623000	0	0	0	12644000	5527200	7116500	31628000	17530000	14098000	38865000	17457000	21408000	14077	4733	13355	85049;85050;85051	114914;114915;114916;114917;114918	114917			5	
ETHQQVVSR	0	Unmodified	1082.5469	0.54687041	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.54		8	3				1	3		2	3	4	6	5.6735	3.0769	2;3	2.9672E-16	3092	160511_QHF_FH_JSI12i_2	172.59	141.91			1.1059	1.0516	16.87	15	0	Median	1.2459	1.0498	0.24613	2	0	Median	0.7073	0.86878	9.8364	3	0	Median	1.1028	1.114	3.7534	4	0	Linear	1.183	1.2507	14.566	6	0	Median	4461500000	2220500000	2241000000	680610000	287980000	392640000	764160000	439760000	324400000	1067600000	525880000	541690000	1949200000	966920000	982250000	14078	198	13356	85052;85053;85054;85055;85056;85057;85058;85059;85060;85061;85062;85063;85064;85065;85066	114919;114920;114921;114922;114923;114924;114925;114926;114927;114928;114929;114930;114931;114932;114933;114934	114921			16	
ETHSLFFR	0	Unmodified	1035.5138	0.51377937	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		3	12							3	3	5	4	38.709	37.896	2;3	5.0401E-14	32036	160511_QHF_FH_JSI12i_3	148.98	125.01			1.001	0.9416	31.665	10	2	Median	1.3811	1.124	11.183	3	0	Median	0.77376	0.93501	3.0232	3	0	Plateau	1.0729	1.0455	55.543	3	2	Median	0.86841	0.87056	NaN	1	0	Median	2578900000	1319100000	1259800000	392320000	170460000	221860000	530120000	302960000	227160000	835820000	417770000	418050000	820670000	427890000	392780000	14079	1486	13357	85067;85068;85069;85070;85071;85072;85073;85074;85075;85076;85077;85078;85079;85080;85081	114935;114936;114937;114938;114939;114940;114941;114942;114943;114944;114945;114946;114947;114948;114949;114950;114951;114952;114953	114952			19	
ETHVMDYR	0	Unmodified	1049.46	0.46002924	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.59		8	1					3		2	4	3	3	17.131	14.311	2;3	0.00040134	11776	160511_QHF_FH_JSI11i_2	122.18	58.87			0.9489	0.98835	10.435	12	0	Median	1.1187	0.95419	5.0087	2	0	Median	0.82083	0.9646	5.963	4	0	Median	1.1324	1.1645	11.118	3	0	Median	0.87742	0.97542	8.0716	3	0	Median	1570700000	800960000	769780000	269810000	128120000	141690000	304040000	171890000	132150000	645890000	322000000	323890000	351000000	178950000	172050000	14080	5391	13358	85082;85083;85084;85085;85086;85087;85088;85089;85090;85091;85092;85093	114954;114955;114956;114957;114958;114959;114960;114961;114962;114963;114964;114965;114966;114967	114961			14	
ETHVMDYR	0	Oxidation (M)	1065.4549	0.45494386	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	15.463	14.816	2	0.0089506	12327	160511_QHF_FH_JSI10i_2	71.491	26.53			1.0144	1.1338	29.839	4	2	Median	2.0498	1.7966	NaN	1	0	Median	0.86568	1.0821	NaN	1	1	Median	1.1887	1.188	NaN	1	1	Median	0.81567	0.88386	NaN	1	0	Median	174760000	75363000	99402000	33367000	10280000	23087000	41388000	21923000	19465000	67310000	23875000	43434000	32699000	19284000	13415000	14081	5391	13358	85094;85095;85096;85097;85098	114968;114969;114970;114971;114972	114972		2651	5	
ETIDNNSVSSPLQSLQQR	0	Unmodified	2014.992	0.99196109	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	1	2	60.748	60.011	2;3	8.5148E-210	53308	160511_QHF_FH_JSI9i_1	334.72	313.42			1.1312	1.0685	22.234	5	0	Median	1.1597	0.98113	12.065	2	0	Median	0.73301	0.88513	NaN	1	0	Median	1.1312	1.096	NaN	1	0	Median	1.4427	1.5381	NaN	1	0	Median	423350000	196480000	226870000	154980000	72726000	82253000	79655000	46665000	32991000	97190000	45433000	51757000	91525000	31656000	59869000	14082	1909	13359	85099;85100;85101;85102;85103;85104;85105	114973;114974;114975;114976;114977;114978;114979;114980;114981;114982	114981			10	
ETIEDLPGK	1	Unmodified	1000.5077	0.50769094	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	35.952	33.723	2	0.00019523	30208	160511_QHF_FH_JSI10i_1	85.38	31.489			0.756	0.776	59.856	5	1	Median	1.3708	1.1262	NaN	1	0	Median	0.57387	0.66768	NaN	1	0	Median	0.51512	0.50467	NaN	1	0	Median	1.3186	1.358	79.141	2	1	Median	527430000	297600000	229820000	100460000	39789000	60671000	149120000	91218000	57903000	187960000	122930000	65035000	89884000	43670000	46214000	14083	292	13360	85106;85107;85108;85109;85110	114983;114984;114985;114986	114984			4	
ETIEIIDLAK	1	Unmodified	1143.6387	0.63870511	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.6	5.2	4						1			1	1	1	2	75.367	72.861	2	0.00099054	67267	160511_QHF_FH_JSI12i_1	68.557	38.24			0.95649	0.97193	21.724	5	0	Median	1.5592	1.2697	NaN	1	0	Median	1.1452	1.3186	NaN	1	0	Median	0.88671	0.84525	NaN	1	0	Median	0.86892	0.90361	10.308	2	0	Median	96549000	49830000	46719000	21230000	11410000	9820200	26906000	12274000	14632000	21686000	12400000	9285800	26727000	13746000	12982000	14084	3276	13361	85111;85112;85113;85114;85115	114987;114988;114989;114990	114987			3	
ETIELSPTGRPK	1	Unmodified	1326.7143	0.71432967	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	30.01	29.946	2	0.00072511	25123	160511_QHF_FH_JSI12i_3	85.355	35.937			0.48511	0.51926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48511	0.51926	NaN	1	1	Median	12162000	8219000	3942700	0	0	0	0	0	0	0	0	0	12162000	8219000	3942700	14085	4976	13362	85116;85117	114991;114992	114992			2	
ETIEQEK	1	Unmodified	875.42363	0.42362696	2064;2004	P63313;CON__P21752;P62328	TMSB10;TMSB4X	Thymosin beta-10;Thymosin beta-4;Hematopoietic system regulatory peptide	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	5.83	4	1	1	1		4		1		4	2	2	4	9.3776	4.424	2	1.7356E-05	3636	160513_QHF_FH_JSI10Kac_3	130.77	49.384		+	1.0491	1.0061	12.672	12	0	Median	1.197	1.2499	17.181	4	0	Linear	1.0004	1.0103	1.1014	2	0	Median	1.1071	1.1087	13.914	2	0	Median	0.86324	0.8857	14.023	4	0	Linear	124400000000	62005000000	62393000000	30910000000	14541000000	16369000000	32535000000	18302000000	14234000000	30587000000	15171000000	15416000000	30367000000	13992000000	16375000000	14086	2064;2004	13363	85118;85119;85120;85121;85122;85123;85124;85125;85126;85127;85128;85129	114993;114994;114995;114996;114997;114998;114999;115000;115001;115002;115003;115004;115005;115006;115007;115008;115009	115008			17	
ETIEQEKQAGES	1	Unmodified	1347.6154	0.61540349	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1	0	2									1	1			11.85	11.308	2	4.6287E-05	9027	160511_QHF_FH_JSI10i_1	121.36	102.09			0.60461	0.60591	122.11	2	1	Median	1.6807	1.4368	NaN	1	0	Median	0.21751	0.25552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74629000	45783000	28847000	32002000	13676000	18326000	42628000	32107000	10521000	0	0	0	0	0	0	14087	2004	13364	85130;85131	115010;115011;115012	115010			3	
ETIEQEKQAGES	1	Acetyl (K)	1389.626	0.62596817	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	0	0	1			By MS/MS		11	0				1								1		36.293	27.585	2	0.035366	11606	160513_QHF_FH_JSI11Kac_1	45.368	33.52			0.37833	0.36816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37833	0.36816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16929000	12474000	4455000	0	0	0	0	0	0	16929000	12474000	4455000	0	0	0	14088	2004	13364	85132	115013;115014	115014			2	
ETIEQEKR	1	Acetyl (K)	1073.5353	0.53530267	2064	P63313	TMSB10	Thymosin beta-10	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	19.547	12.194	2	4.2826E-23	8174	160513_QHF_FH_JSI12Kac_3	187	103.79		+	0.4836	0.5219	51.744	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94674	1.1271	NaN	1	0	Median	0.33345	0.33084	NaN	1	0	Median	0.4836	0.5219	16.507	2	0	Median	86095000	58769000	27326000	0	0	0	16480000	9030800	7449600	47342000	36527000	10816000	22272000	13211000	9061200	14089	2064	13365	85133;85134;85135;85136	115015;115016;115017;115018	115016	2135		4	
ETIFELEDQVEQHR	0	Unmodified	1771.8377	0.83769228	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.875	71.919	3	2.7059E-05	62984	160511_QHF_FH_JSI11i_2	89.541	83.378			1.0771	1.1465	12.638	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2678	1.2536	NaN	1	0	Median	0.91513	1.0485	NaN	1	0	Median	95869000	50901000	44968000	0	0	0	0	0	0	47967000	22466000	25501000	47902000	28435000	19467000	14090	2911	13366	85137;85138	115019;115020	115020			2	
ETIFSISK	1	Unmodified	923.4964	0.49639797	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	50.942	49.951	2	0.014652	42739	160511_QHF_FH_JSI12i_2	51.193	37.035			1.1432	1.0169	26.897	3	1	Plateau	1.1432	1.0169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6269	1.6221	NaN	1	1	Median	0.95288	1.0192	NaN	1	0	Median	143470000	67757000	75717000	46401000	18667000	27734000	0	0	0	52324000	25999000	26325000	44748000	23091000	21658000	14091	409	13367	85139;85140;85141	115021;115022;115023	115021			3	
ETIGVGSYSECK	1	Unmodified	1328.5918	0.59183127	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				34.262	33.007	2	0.00048451	28921	160511_QHF_FH_JSI9i_1	85.958	56.149			0.26088	0.22185	NaN	1	1	Median	0.26088	0.22185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27825000	21787000	6037900	27825000	21787000	6037900	0	0	0	0	0	0	0	0	0	14092	2669	13368	85142	115024	115024			1	
ETIIAFAWEPNGSK	1	Unmodified	1561.7777	0.77765821	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			82.966	82.814	2	4.0331E-05	75228	160511_QHF_FH_JSI10i_1	141.73	115.68			0.98126	1.1169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98126	1.1169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25308000	13532000	11776000	0	0	0	25308000	13532000	11776000	0	0	0	0	0	0	14093	1867	13369	85143	115025;115026	115026			2	
ETIMNQEK	1	Oxidation (M)	1007.4594	0.45936054	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	6.8293	6.4588	2	0.0027922	4190	160511_QHF_FH_JSI11i_1	84.498	13.202			0.95036	0.93669	50.077	6	4	Median	1.4449	1.1912	78.923	2	2	Median	1.0657	1.2622	70.373	2	2	Median	1.1004	1.0705	NaN	1	0	Median	0.79067	0.8196	NaN	1	0	Median	599920000	258250000	341660000	200270000	77855000	122410000	189760000	90576000	99183000	74377000	30753000	43624000	135510000	59068000	76441000	14094	1172	13370	85144;85145;85146;85147;85148;85149	115027;115028;115029;115030;115031;115032;115033;115034	115028		794	8	
ETIMNQEK	1	Unmodified	991.46445	0.46444592	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.65	4		1			3				2	2	2	2	15.388	12.028	2	7.2141E-05	10088	160511_QHF_FH_JSI9i_1	133.12	63.941			0.99944	1.2197	30.014	7	1	Plateau	1.7679	1.4823	NaN	1	0	Median	0.6899	0.82117	52.755	2	1	Median	1.0305	1.0159	14.262	2	0	Median	0.97374	1.0577	7.3872	2	0	Median	7501000000	3474800000	4026200000	2010600000	807660000	1203000000	1907400000	987430000	919970000	1718100000	760690000	957450000	1864800000	919020000	945750000	14095	1172	13370	85150;85151;85152;85153;85154;85155;85156;85157	115035;115036;115037;115038;115039;115040;115041;115042;115043;115044;115045	115043			11	
ETIMNQEKLAK	2	Acetyl (K)	1345.6912	0.69115139	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	2	1	49.823	40.064	2	5.4077E-05	23168	160513_QHF_FH_JSI11Kac_4	100.48	77.737			0.45925	0.46947	57.126	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92052	1.0901	NaN	1	0	Median	0.33791	0.33379	12.094	2	0	Median	0.57313	0.60618	NaN	1	0	Median	51965000	34013000	17953000	0	0	0	12719000	5617900	7100900	28787000	21145000	7641700	10460000	7249900	3210300	14096	1172	13371	85158;85159;85160;85161;85162	115046;115047;115048;115049;115050;115051	115049	1029		6	
ETIMNQEKLAK	2	Acetyl (K);Oxidation (M)	1361.6861	0.68606601	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	2	1	35.141	26.42	2	4.944E-05	15645	160513_QHF_FH_JSI11Kac_3	96.342	82.135			0.33975	0.33192	102.93	4	1	Median	NaN	NaN	NaN	0	0	Median	0.7407	0.87551	NaN	1	0	Median	0.33975	0.33192	11.512	2	0	Median	0.066256	0.072869	NaN	1	1	Median	25772000	18798000	6974500	0	0	0	4090100	2801300	1288800	18827000	13253000	5573700	2855500	2743500	111970	14097	1172	13371	85163;85164;85165;85166;85167	115052;115053;115054;115055;115056;115057	115053	1029	794	5	
ETIPDIDPNAK	1	Unmodified	1211.6034	0.60338224	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.27	5.08	3				5	3					3	5	3	52.143	45.429	2	1.1074E-05	40547	160511_QHF_FH_JSI10i_1	107.79	95.161			0.92785	1.0369	35.232	10	3	Median	NaN	NaN	NaN	0	0	Median	0.78266	0.92705	11.918	3	0	Plateau	1.3148	1.2787	49.826	4	2	Median	1.5161	0.94458	29.847	3	1	Plateau	1276900000	659700000	617220000	0	0	0	566360000	304140000	262220000	507600000	257340000	250250000	202960000	98215000	104750000	14098	1805	13372	85168;85169;85170;85171;85172;85173;85174;85175;85176;85177;85178	115058;115059;115060;115061;115062;115063;115064;115065;115066;115067;115068;115069;115070;115071	115064			14	
ETIPLQETSLYTQDR	0	Unmodified	1792.8843	0.88430813	1719	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	62.845	62.261	2	3.685E-21	56560	160511_QHF_FH_JSI11i_1	169.89	143.85			1.1539	1.1286	12.658	5	2	Median	1.2512	1.0246	NaN	1	0	Median	0.84453	1.0035	20.662	2	2	Median	1.1608	1.1286	NaN	1	0	Median	1.1539	1.1738	NaN	1	0	Median	349430000	154110000	195320000	56277000	21743000	34534000	123290000	63081000	60208000	87129000	34612000	52517000	82733000	34675000	48058000	14099	1719	13373	85179;85180;85181;85182;85183	115072;115073;115074;115075;115076;115077;115078;115079	115073			8	
ETIQKDLDAK	2	Acetyl (K)	1201.619	0.6190323	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		42.394	33.23	2	0.0003663	18904	160513_QHF_FH_JSI11Kac_3	89.247	69.257			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14100	1016	13374	85184	115080	115080	823		1	
ETISQATSEK	1	Unmodified	1092.5299	0.52988294	3413	Q8IW35	CEP97	Centrosomal protein of 97 kDa	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.454	15.01	2	9.9871E-05	12726	160511_QHF_FH_JSI12i_1	97.965	67.229			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14101	3413	13375	85185	115081	115081			1	
ETISTANK	1	Unmodified	862.43961	0.43961137	4845	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		8.2645	7.9187	2	0.014498	5615	160511_QHF_FH_JSI11i_1	51.335	35.229			1.247	1.051	27.156	3	1	Plateau	1.5564	1.2818	NaN	1	0	Median	1.247	1.4489	NaN	1	1	Median	0.86376	0.86181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	357700000	177200000	180510000	121650000	51078000	70572000	104160000	57206000	46958000	131890000	68914000	62978000	0	0	0	14102	4845	13376	85186;85187;85188	115082;115083	115082			2	
ETITAPVPFDFTHK	1	Unmodified	1601.809	0.80895834	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	4.23	3	5						1		1	2	4	2	74.844	73.094	2;3	4.9589E-07	64622	160511_QHF_FH_JSI11i_2	113.25	103.46			0.905	0.92673	16.283	9	3	Median	1.102	0.92673	NaN	1	0	Median	0.63412	0.74854	23.949	2	1	Median	0.92045	0.91908	10.761	4	1	Median	0.99832	1.0503	6.0365	2	1	Median	570900000	332480000	238420000	75276000	43893000	31383000	145990000	100720000	45275000	240090000	120230000	119870000	109530000	67639000	41895000	14103	4221	13377	85189;85190;85191;85192;85193;85194;85195;85196;85197	115084;115085;115086;115087;115088;115089;115090;115091;115092	115089			8	
ETITAPVPFDFTHKK	2	Unmodified	1729.9039	0.90392136	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	63.813	63.423	3;4	4.7281E-05	54786	160511_QHF_FH_JSI12i_3	85.909	73.886			0.9532	0.96486	48.425	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2529	1.6071	NaN	1	0	Median	0.62139	0.58716	40.617	2	0	Median	1.0434	1.0615	13.496	2	0	Median	297540000	154290000	143260000	0	0	0	13091000	5396300	7694900	79083000	47228000	31855000	205370000	101660000	103710000	14104	4221	13378	85198;85199;85200;85201;85202	115093;115094;115095;115096;115097	115095			5	
ETITESAGR	0	Unmodified	962.46689	0.46688876	5417	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	15.107	7.7515	2	0.0020166	6185	160513_QHF_FH_JSI12Kac_3	81.296	41.193			0.87855	0.86502	9.914	4	0	Median	NaN	NaN	NaN	0	0	Median	0.69155	0.79933	NaN	1	0	Median	0.87855	0.86502	5.7955	2	0	Median	0.93754	0.99981	NaN	1	0	Median	38134000	18261000	19873000	0	0	0	6781400	3081400	3699900	21590000	9975500	11614000	9763000	5204500	4558500	14105	5417	13379	85203;85204;85205;85206	115098;115099;115100;115101;115102	115102			5	
ETKALSLAR	1	Acetyl (K)	1029.5819	0.58185894	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		46.319	36.033	2	0.021147	20392	160513_QHF_FH_JSI10Kac_4	53.089	25.265			0.83805	0.91114	9.8737	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81737	0.97702	NaN	1	0	Median	0.85927	0.84969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47585000	26145000	21440000	0	0	0	24002000	12325000	11678000	23583000	13820000	9762600	0	0	0	14106	1436;1437;1445	13380	85207;85208	115103	115103	1403		1	
ETKPEPMEEDLPENK	2	Unmodified	1784.8138	0.8138453	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1	0	2									1	1			34.091	32.836	2	0.00055876	29079	160511_QHF_FH_JSI10i_1	75.78	53.907			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3850600	3850600	0	3850600	3850600	0	0	0	0	0	0	0	0	0	0	14107	1386	13381	85209;85210	115104;115105	115104			2	
ETKPEPMEEDLPENKK	3	Oxidation (M)	1928.9037	0.90372294	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	2	By matching		By MS/MS	By MS/MS	2.75	0.433		3	9							1		6	5	23.227	23.002	3;4	0.0002158	15441	160511_QHF_FH_JSI11i_3	63.337	56.609			0.74859	0.76678	81.429	12	4	Median	1.4846	1.3422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59504	0.5836	113.84	6	2	Median	0.74629	0.74685	29.891	5	2	Median	636170000	344870000	291300000	47378000	21442000	25937000	0	0	0	339610000	180680000	158930000	249180000	142750000	106430000	14108	1386	13382	85211;85212;85213;85214;85215;85216;85217;85218;85219;85220;85221;85222	115106;115107;115108;115109;115110;115111;115112;115113;115114	115106		1033	9	
ETKPEPMEEDLPENKK	3	Unmodified	1912.9088	0.90880832	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.768	5	8	7							4	4	6	6	26.949	26.448	3;4	7.6189E-08	22745	160511_QHF_FH_JSI9i_2	138.08	121.95			0.9371	1.0337	55.178	20	8	Median	1.0825	0.8899	62.243	4	4	Median	0.71049	0.84431	11.277	4	0	Median	1.0748	1.0629	36.173	6	0	Median	1.2077	1.3035	86.167	6	4	Median	4696200000	2388900000	2307300000	702710000	308120000	394590000	1167600000	609420000	558160000	1821800000	1005500000	816290000	1004100000	465810000	538270000	14109	1386	13382	85223;85224;85225;85226;85227;85228;85229;85230;85231;85232;85233;85234;85235;85236;85237;85238;85239;85240;85241;85242	115115;115116;115117;115118;115119;115120;115121;115122;115123;115124;115125;115126;115127;115128;115129;115130;115131;115132;115133;115134;115135;115136;115137;115138;115139;115140;115141;115142;115143	115127			29	
ETKPIPNLIFAIEQYEK	2	Unmodified	2032.0881	0.088093311	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	100.69	100.69	3	1.7558E-05	87241	160511_QHF_FH_JSI12i_3	86.479	76.38			0.83127	0.80174	5.5064	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83777	0.77112	NaN	1	0	Median	0.82483	0.83357	NaN	1	0	Median	223280000	118910000	104380000	0	0	0	0	0	0	137500000	73789000	63713000	85782000	45119000	40663000	14110	5034	13383	85243;85244	115144;115145;115146	115146			3	
ETLAQLQQEFQR	0	Unmodified	1489.7525	0.75250609	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							2	2	3	3	71.214	70.394	2;3	5.6494E-53	60641	160511_QHF_FH_JSI12i_2	212.72	176.3			0.84688	0.93199	27.892	9	1	Median	1.0746	0.90506	31.514	2	0	Median	0.64302	0.77491	26.103	2	0	Median	0.82451	0.83866	15.512	2	0	Median	0.641	0.69997	39.832	3	1	Plateau	1319600000	749710000	569910000	282790000	140980000	141810000	279980000	176830000	103160000	455250000	291650000	163610000	301600000	140260000	161340000	14111	263	13384	85245;85246;85247;85248;85249;85250;85251;85252;85253;85254	115147;115148;115149;115150;115151;115152;115153;115154;115155;115156;115157;115158;115159	115149			13	
ETLAVNYEK	1	Unmodified	1065.5342	0.53424004	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		31.74	30.99	2	0.00088652	27178	160511_QHF_FH_JSI9i_1	83.783	37.449			0.95746	0.86811	39.595	2	2	Median	0.78756	0.65612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.164	1.1486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	293940000	143160000	150780000	117480000	52809000	64671000	0	0	0	176460000	90354000	86107000	0	0	0	14112	2727	13385	85255;85256	115160;115161	115161			2	
ETLAYFIYMVK	1	Unmodified	1376.705	0.70501054	4825	Q9HAJ7	SAP30L	Histone deacetylase complex subunit SAP30L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.648	82.339	2	4.2659E-14	45607	160513_QHF_FH_JSI9Kac_6	159.37	112.48			1.4988	1.7159	32.705	4	3	Linear	0.92566	0.81115	NaN	1	1	Median	1.5331	1.7916	NaN	1	1	Median	1.21	1.1633	NaN	1	1	Median	1.2359	1.3034	NaN	1	0	Median	468170000	230260000	237910000	77678000	45449000	32229000	195960000	90056000	105900000	118210000	57335000	60873000	76330000	37418000	38912000	14113	4825	13386	85257;85258;85259;85260	115162;115163;115164;115165;115166	115163			5	
ETLDAQTFHTR	0	Unmodified	1317.6313	0.63132832	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.2	6.37		3						2		2	1	2		31.885	27.502	3	0.0027062	24112	160511_QHF_FH_JSI10i_2	46.063	42.049			1.4268	1.4161	13.077	5	0	Median	1.6745	1.3782	24.05	2	0	Median	1.0067	1.2518	NaN	1	0	Median	1.4275	1.418	0.1905	2	0	Median	NaN	NaN	NaN	0	0	Median	246060000	112420000	133640000	74259000	35716000	38544000	68413000	34136000	34278000	103390000	42571000	60816000	0	0	0	14114	907	13387	85261;85262;85263;85264;85265	115167;115168;115169;115170;115171;115172;115173	115173			7	
ETLDHKPR	1	Unmodified	994.51959	0.51959303	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	5.4444	5.5018	2;3	0.00011794	3180	160511_QHF_FH_JSI11i_3	103.56	82.288			0.67333	0.69533	56.395	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80189	0.7544	26.16	2	0	Median	0.67333	0.69533	77.561	3	1	Median	778940000	489360000	289580000	0	0	0	0	0	0	349340000	206300000	143040000	429600000	283060000	146540000	14115	3708	13388	85266;85267;85268;85269;85270	115174;115175;115176;115177;115178	115174			5	
ETLDPGDPETNNTIR	0	Unmodified	1670.7748	0.77475768	3320	Q86UA1	PRPF39	Pre-mRNA-processing factor 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.992	37.369	2	2.012E-07	33845	160511_QHF_FH_JSI12i_1	90.685	73.66			0.91805	1.0382	46.047	3	3	Median	1.6702	1.3659	NaN	1	1	Median	0.91805	1.0382	NaN	1	1	Median	0.57115	0.55615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50953000	28590000	22363000	15803000	4661000	11142000	20757000	14020000	6736400	14394000	9908700	4485000	0	0	0	14116	3320	13389	85271;85272;85273;85274	115179;115180;115181;115182;115183	115180			5	
ETLDQINQELIQAK	1	Unmodified	1641.8574	0.85736509	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	66.954	66.313	2	1.05E-09	62341	160511_QHF_FH_JSI9i_1	103.43	77.809			0.48586	0.4267	119.53	4	1	Median	0.44484	0.36561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53066	0.498	NaN	1	0	Median	0.1991	0.20976	193.25	2	1	Median	190920000	141290000	49634000	43422000	27879000	15543000	0	0	0	64131000	43681000	20450000	83369000	69728000	13641000	14117	3009	13390	85275;85276;85277;85278;85279	115184;115185;115186;115187;115188;115189	115189			6	
ETLDTLEK	1	Unmodified	947.48114	0.48114184	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	27.574	26.992	2	0.0075276	23929	160511_QHF_FH_JSI10i_1	59.245	30.733			0.90762	0.89055	20.571	4	0	Median	1.1637	0.96013	NaN	1	0	Median	0.70949	0.826	NaN	1	0	Median	1.1611	1.1251	NaN	1	0	Median	0.65945	0.69563	NaN	1	0	Median	689560000	300420000	389140000	140420000	64894000	75527000	240810000	120870000	119930000	166760000	32606000	134150000	141580000	82050000	59528000	14118	387	13391	85280;85281;85282;85283;85284	115190;115191;115192;115193;115194	115193			5	
ETLEDGFPVHDGK	1	Unmodified	1442.6678	0.66777341	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								3	2	1	1	42.462	41.706	2;3	1.8243E-05	37474	160511_QHF_FH_JSI10i_1	121.96	115.28			1.0508	1.1184	24.363	7	2	Median	2.0039	1.6652	29.054	3	2	Median	1.0038	1.1764	7.1479	2	0	Median	0.96705	0.93758	NaN	1	0	Median	0.9616	1.029	NaN	1	0	Median	1305400000	621390000	683970000	214560000	74998000	139560000	450990000	225260000	225740000	367340000	196200000	171140000	272460000	124930000	147540000	14119	1355	13392	85285;85286;85287;85288;85289;85290;85291	115195;115196;115197;115198;115199;115200;115201	115198			7	
ETLEQLSEFNDSLK	1	Unmodified	1651.7941	0.79409613	3823	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	74.85	74.295	2	2.5575E-05	67698	160511_QHF_FH_JSI12i_1	138.75	105.35			0.71344	0.74868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71344	0.74868	NaN	1	1	Median	20518000	14892000	5626500	0	0	0	0	0	0	0	0	0	20518000	14892000	5626500	14120	3823	13393	85292;85293	115202;115203	115202			2	
ETLEQQK	1	Unmodified	874.43961	0.43961137	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	5.81	5				2	3				1	4	3	2	7.8691	3.1939	2	1.1553E-05	4876	160511_QHF_FH_JSI10i_1	128.38	47.001			0.96234	0.98487	11.638	8	0	Median	1.3084	1.0649	NaN	1	0	Median	0.82573	0.95134	0.35251	2	0	Median	1.204	1.1192	10.119	3	0	Median	0.84996	0.8992	13.888	2	0	Median	1903500000	841810000	1061700000	623440000	235220000	388230000	9126500	5148900	3977700	622360000	277840000	344520000	648560000	323610000	324950000	14121	1805	13394	85294;85295;85296;85297;85298;85299;85300;85301;85302;85303	115204;115205;115206;115207;115208;115209;115210;115211;115212;115213;115214;115215;115216	115211			13	
ETLEQQKR	1	Acetyl (K)	1072.5513	0.55128709	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	17.137	10.134	2	0.037492	7245	160513_QHF_FH_JSI12Kac_3	82.279	58.755			0.4137	0.44965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4137	0.44965	NaN	1	0	Median	4752000	3151400	1600500	0	0	0	0	0	0	0	0	0	4752000	3151400	1600500	14122	1805	13395	85304	115217	115217			1	
ETLETISNEEQTPLLK	1	Unmodified	1843.9415	0.94148865	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	65.658	65.049	2	3.6981E-66	59275	160511_QHF_FH_JSI12i_1	287.13	248.73			1.0158	1.0685	16.059	4	0	Median	1.0585	0.88577	NaN	1	0	Median	0.97489	1.1457	NaN	1	0	Median	1.3429	1.2795	NaN	1	0	Median	0.92416	0.99657	NaN	1	0	Median	130630000	72514000	58113000	27395000	14053000	13342000	28263000	15869000	12395000	38263000	19432000	18831000	36706000	23161000	13545000	14123	3668	13396	85305;85306;85307;85308	115218;115219	115219			2	
ETLFNTLANNR	0	Unmodified	1291.6521	0.65206377	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.942	55.401	2	0.0023727	46330	160511_QHF_FH_JSI10i_3	72.643	55.403			0.61675	0.72092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61675	0.72092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19475000	10267000	9208000	0	0	0	19475000	10267000	9208000	0	0	0	0	0	0	14124	1443	13397	85309	115220	115220			1	
ETLGLLR	0	Unmodified	800.4756	0.47560295	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.048	44.072	2	0.020074	37703	160511_QHF_FH_JSI12i_2	57.335	7.0284			0.93067	1.0393	5.4169	4	0	Median	1.1964	1.0419	NaN	1	0	Median	0.83449	1.0368	NaN	1	0	Median	0.90898	0.93629	NaN	1	0	Median	0.95288	1.0501	NaN	1	0	Median	229320000	121320000	108010000	33708000	15959000	17748000	60451000	34112000	26339000	76276000	40933000	35344000	58890000	30313000	28576000	14125	1682	13398	85310;85311;85312;85313	115221;115222;115223;115224	115221			4	
ETLGSEAVSSNVIDYGHASK	1	Unmodified	2062.9807	0.98072771	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				52.568	51.524	3	5.207E-05	45158	160511_QHF_FH_JSI9i_2	71.527	62.344			0.91811	0.78005	NaN	1	1	Median	0.91811	0.78005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51770000	26656000	25115000	51770000	26656000	25115000	0	0	0	0	0	0	0	0	0	14126	2584	13399	85314	115225	115225			1	
ETLGTGAFSEVVLAEEK	1	Unmodified	1778.8938	0.89381018	3392	Q8IU85	CAMK1D	Calcium/calmodulin-dependent protein kinase type 1D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.04	81.167	2	4.5455E-33	72337	160511_QHF_FH_JSI10i_2	155.98	123.97			1.7476	1.831	46.791	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3062	1.3152	NaN	1	1	Median	2.3382	2.549	NaN	1	0	Median	54309000	19486000	34823000	0	0	0	0	0	0	27186000	11225000	15961000	27123000	8261000	18862000	14127	3392	13400	85315;85316;85317;85318	115226;115227;115228;115229;115230	115230			5	
ETLIDVAR	0	Unmodified	915.50255	0.50254598	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.736	42.108	2	0.042075	38173	160511_QHF_FH_JSI12i_1	39.022	19.545			0.82493	0.88407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82493	0.88407	NaN	1	0	Median	44101000	24898000	19204000	0	0	0	0	0	0	0	0	0	44101000	24898000	19204000	14128	1494	13401	85319	115231;115232	115232			2	
ETLIIEPEK	1	Unmodified	1070.5859	0.58594126	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	2	3	2	49.127	45.521	2	3.4305E-05	40735	160511_QHF_FH_JSI10i_1	110.87	93.486			0.74228	0.73894	27.741	9	5	Median	0.93525	0.77074	37.423	2	2	Median	0.49999	0.58116	31.283	2	1	Median	0.9255	0.90723	25.742	3	2	Plateau	0.82895	0.87189	20.089	2	0	Median	720040000	373280000	346750000	224010000	110270000	113740000	121770000	71896000	49876000	242220000	117910000	124300000	132040000	73201000	58834000	14129	227	13402	85320;85321;85322;85323;85324;85325;85326;85327;85328	115233;115234;115235;115236;115237;115238;115239;115240;115241;115242;115243;115244;115245	115239			13	
ETLIQFLR	0	Unmodified	1018.5811	0.58113065	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		77.895	77.191	2	0.0028908	68724	160511_QHF_FH_JSI10i_2	83.753	49.664			1.0685	1.1948	4.3477	3	3	Plateau	1.3602	1.1948	NaN	1	1	Median	1.0201	1.251	NaN	1	1	Median	1.1494	1.1469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123940000	61043000	62895000	33257000	12650000	20607000	45412000	24935000	20478000	45269000	23458000	21811000	0	0	0	14130	2947	13403	85329;85330;85331	115246;115247;115248	115248			3	
ETLLAMFK	1	Unmodified	951.50994	0.50993955	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.51	2	7	4				1	4	4	5	6	6	5	78.871	74.554	1;2	2.1687E-06	67260	160511_QHF_FH_JSI11i_2	144.83	96.33			0.91914	0.99195	51.449	22	5	Median	1.1782	0.99595	26.844	5	1	Median	0.87495	1.0359	81.034	6	2	Median	0.92754	0.94003	29.437	6	1	Median	0.98483	1.0017	60.373	5	1	Median	5629800000	3406700000	2223100000	940710000	485390000	455320000	1381300000	1198800000	182460000	1949300000	982650000	966620000	1358500000	739860000	618690000	14131	1282	13404	85332;85333;85334;85335;85336;85337;85338;85339;85340;85341;85342;85343;85344;85345;85346;85347;85348;85349;85350;85351;85352;85353	115249;115250;115251;115252;115253;115254;115255;115256;115257;115258;115259;115260;115261;115262;115263;115264;115265;115266;115267;115268;115269;115270;115271;115272;115273;115274	115264			25	
ETLLAMFK	1	Oxidation (M)	967.50485	0.50485417	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.458							3	7		1	3	4	2	67.743	56.949	2	0.0017829	30946	160513_QHF_FH_JSI11Kac_5	91.626	45.256			0.97253	1.023	38.924	10	0	Median	1.1849	1.005	NaN	1	0	Median	1.0425	1.2331	52.635	3	0	Plateau	0.96462	0.95934	23.525	4	0	Median	1.3667	1.5116	52.707	2	0	Median	79363000	37884000	41479000	14019000	5949800	8068900	22698000	11951000	10747000	26597000	13221000	13377000	16050000	6763000	9286700	14132	1282	13404	85354;85355;85356;85357;85358;85359;85360;85361;85362;85363	115275;115276;115277;115278;115279;115280;115281	115277		917	7	
ETLLAMFKYNK	2	Acetyl (K)	1398.7217	0.72172323	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		86.955	77.632	2	6.5728E-11	43206	160513_QHF_FH_JSI11Kac_6	134.25	113.13			0.11468	0.11174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11468	0.11174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86875000	83356000	3519500	0	0	0	0	0	0	86875000	83356000	3519500	0	0	0	14133	1282	13405	85364	115282	115282	1197		1	
ETLLNGVGYLHEGLSPMER	0	Unmodified	2114.0466	0.046639202	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		79.655	79.187	3	4.4656E-09	70593	160511_QHF_FH_JSI11i_3	112.37	86.777			0.9226	1.1022	6.8641	3	0	Plateau	1.2623	1.1022	NaN	1	0	Median	0.9226	1.1423	NaN	1	0	Median	1.0842	1.0004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	426960000	207070000	219880000	124710000	60203000	64504000	166230000	82489000	83736000	136020000	64380000	71644000	0	0	0	14134	552	13406	85365;85366;85367	115283;115284;115285	115283			2	
ETLLNSATTSLNSK	1	Unmodified	1477.7624	0.76240208	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	51.481	50.808	2	2.0511E-30	46101	160511_QHF_FH_JSI12i_1	195.25	169.69			0.92217	0.9146	8.1616	4	0	Median	0.9723	0.78937	NaN	1	0	Median	0.77083	0.89619	NaN	1	0	Median	0.95035	0.93339	NaN	1	0	Median	0.89482	0.94254	NaN	1	0	Median	396010000	213630000	182380000	83335000	35918000	47417000	97885000	55843000	42042000	120870000	72758000	48110000	93920000	49113000	44807000	14135	1722	13407	85368;85369;85370;85371;85372	115286;115287;115288;115289;115290;115291;115292;115293;115294	115289			9	
ETLLSFLLPGHTR	0	Unmodified	1482.8195	0.81946344	5003	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		94.702	94.433	3	0.00046446	83892	160511_QHF_FH_JSI11i_3	44.426	40.11			1.0194	1.1963	49.436	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0194	1.1963	NaN	1	0	Median	0.86873	0.84044	63.692	2	1	Median	NaN	NaN	NaN	0	0	Median	21674000	9847200	11827000	0	0	0	3683000	1828000	1855000	17991000	8019200	9972000	0	0	0	14136	5003	13408	85373;85374;85375	115295;115296;115297	115295			3	
ETLMDLSTK	1	Unmodified	1036.5111	0.51106176	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	2	3	4	53.918	47.624	2	4.2032E-06	42552	160511_QHF_FH_JSI9i_1	120.15	75.708			0.96548	0.98267	16.884	10	0	Median	1.2077	0.99935	NaN	1	0	Median	0.72348	0.86399	15.458	2	0	Median	0.92215	0.89743	10.158	3	0	Plateau	0.96574	1.0335	22.123	4	0	Median	2446200000	1380500000	1065700000	546180000	268700000	277480000	614940000	390080000	224860000	707960000	373790000	334170000	577150000	347960000	229190000	14137	1372	13409	85376;85377;85378;85379;85380;85381;85382;85383;85384;85385	115298;115299;115300;115301;115302;115303;115304;115305;115306;115307;115308;115309;115310;115311;115312;115313;115314;115315;115316	115314			19	
ETLMEALHYMLLVSEVEETEIFK	1	Unmodified	2753.3544	0.35435669	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.49	95.765	3	7.5494E-38	56545	160513_QHF_FH_JSI10Kac_6	162.81	131.63			0.89534	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89534	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	527760000	278830000	248930000	0	0	0	527760000	278830000	248930000	0	0	0	0	0	0	14138	231	13410	85386	115317	115317			1	
ETLNQAETK	1	Unmodified	1032.5088	0.50875357	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	12.206	10.411	2	1.729E-31	8415	160511_QHF_FH_JSI9i_1	204.07	107			0.7837	0.78481	73.268	5	1	Median	1.138	0.91606	NaN	1	0	Median	0.7837	0.95251	NaN	1	0	Median	0.37218	0.36128	109.71	2	1	Median	0.68651	0.72723	NaN	1	0	Median	1043900000	561840000	482020000	239780000	117930000	121850000	274680000	144110000	130570000	279510000	165030000	114480000	249880000	134770000	115110000	14139	1016	13411	85387;85388;85389;85390;85391	115318;115319;115320;115321;115322;115323;115324	115324			7	
ETLPAEQDLTTK	1	Unmodified	1344.6773	0.67727546	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.35	4				4	5				1	5	4	3	47.31	41.158	2	2.1605E-16	36263	160511_QHF_FH_JSI9i_1	166.55	118.73			0.96377	0.90717	35.434	11	5	Median	0.99663	0.81458	NaN	1	0	Median	0.35199	0.41335	53.25	4	2	Linear	0.56698	0.54359	31.429	3	1	Plateau	0.96377	1.025	8.9815	3	2	Plateau	3843100000	2209800000	1633400000	692350000	351850000	340500000	1088500000	713030000	375490000	1082900000	651280000	431610000	979380000	493620000	485760000	14140	1264	13412	85392;85393;85394;85395;85396;85397;85398;85399;85400;85401;85402;85403;85404	115325;115326;115327;115328;115329;115330;115331;115332;115333;115334;115335;115336;115337;115338;115339;115340;115341;115342;115343	115339			19	
ETLPSIWDSPTK	1	Unmodified	1372.6874	0.68744622	5706	Q9Y673	ALG5	Dolichyl-phosphate beta-glucosyltransferase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		65.688	65.252	2	5.7088E-05	59280	160511_QHF_FH_JSI11i_1	108.47	93.209			1.143	1.0893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.143	1.0893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	107820000	58113000	49705000	0	0	0	0	0	0	107820000	58113000	49705000	0	0	0	14141	5706	13413	85405	115344	115344			1	
ETLPSKPVK	2	Acetyl (K)	1039.5914	0.59136099	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4				1	2	1	2	42.972	34.03	2	0.0033166	18411	160513_QHF_FH_JSI10Kac_3	79.906	46.11			0.87553	0.93952	11.439	5	0	Median	NaN	NaN	NaN	0	0	Median	0.76087	0.89628	6.6627	2	0	Median	0.87553	0.84311	NaN	1	0	Median	0.97316	1.0519	7.9416	2	0	Median	27751000	15683000	12068000	0	0	0	10145000	6385700	3759400	6900900	3574000	3326900	10705000	5723100	4981800	14142	5136	13414	85406;85407;85408;85409;85410;85411	115345;115346;115347;115348;115349;115350;115351;115352	115351	3319		8	
ETLQAVPK	1	Unmodified	884.49673	0.49673232	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.021	21.814	2	0.0015966	18938	160511_QHF_FH_JSI10i_1	101.33	55.609			0.90928	0.96856	15.642	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73711	0.86714	NaN	1	1	Median	1.1217	1.0818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	173490000	93570000	79919000	0	0	0	93393000	52768000	40625000	80096000	40802000	39294000	0	0	0	14143	128	13415	85412;85413	115353;115354	115354			2	
ETLQQHK	1	Unmodified	882.45593	0.45593014	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.9	6.56	7	7	5				7	9	6	10	10	10	11	4.9241	0.092903	2;3	1.2311E-13	2401	160511_QHF_FH_JSI11i_1	149.4	125.6			0.97297	0.98128	28.847	38	5	Median	1.0639	0.87993	35.422	10	1	Median	0.84015	0.97092	31.216	9	2	Median	1.1613	1.1692	19.164	8	1	Median	0.92307	1.0184	21.33	11	1	Median	28871000000	14224000000	14647000000	6059100000	2863700000	3195400000	4272900000	2393100000	1879800000	10838000000	5268200000	5570100000	7700500000	3698900000	4001600000	14144	1057	13416	85414;85415;85416;85417;85418;85419;85420;85421;85422;85423;85424;85425;85426;85427;85428;85429;85430;85431;85432;85433;85434;85435;85436;85437;85438;85439;85440;85441;85442;85443;85444;85445;85446;85447;85448;85449;85450;85451;85452;85453;85454	115355;115356;115357;115358;115359;115360;115361;115362;115363;115364;115365;115366;115367;115368;115369;115370;115371;115372;115373;115374;115375;115376;115377;115378;115379;115380;115381;115382;115383;115384;115385;115386;115387;115388;115389;115390;115391;115392;115393;115394;115395;115396;115397;115398;115399;115400;115401;115402;115403	115357			49	
ETLQQHKLLK	2	Acetyl (K)	1278.7296	0.7295858	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0.667							2	5	2		4	4	1	39.758	30.049	2;3	6.0497E-05	17298	160513_QHF_FH_JSI11Kac_5	93.258	76.725			0.26436	0.26784	98.182	9	0	Median	NaN	NaN	NaN	0	0	Median	1.3366	1.5746	7.7324	4	0	Median	0.24531	0.24229	5.3714	4	0	Median	0.24333	0.26784	NaN	1	0	Median	234580000	173030000	61550000	0	0	0	43517000	17830000	25687000	175350000	142730000	32619000	15714000	12471000	3243700	14145	1057	13417	85455;85456;85457;85458;85459;85460;85461;85462;85463	115404;115405;115406;115407;115408	115406	890		5	
ETLQYFQTLK	1	Unmodified	1269.6605	0.66050319	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	71.675	61.034	2	0.050329	33024	160513_QHF_FH_JSI12Kac_4	37.476	25.628			1.1381	1.234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1381	1.234	NaN	1	0	Median	4195500	1843500	2352000	0	0	0	0	0	0	0	0	0	4195500	1843500	2352000	14146	3873	13418	85464	115409	115409			1	
ETLQYLQQNAK	1	Unmodified	1334.683	0.68302954	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.8	0.786						4	3	2			3	3	3	47.939	38.156	2	5.1826E-58	20668	160513_QHF_FH_JSI10Kac_3	218.48	169.06			0.63365	0.70951	52.656	8	5	Median	NaN	NaN	NaN	0	0	Median	0.59698	0.71581	3.3148	2	1	Median	0.68276	0.66631	91.899	3	2	Median	0.65663	0.71994	32.159	3	2	Median	301980000	207690000	94283000	0	0	0	105310000	76118000	29197000	68416000	42004000	26412000	128240000	89570000	38674000	14147	4398	13419	85465;85466;85467;85468;85469;85470;85471;85472;85473	115410;115411;115412;115413;115414;115415;115416;115417;115418;115419;115420	115418			10	
ETLSSAAK	1	Unmodified	805.41815	0.41814765	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.0796	8.3953	2	0.022018	5933	160511_QHF_FH_JSI9i_1	44.349	14.164			1.1141	0.89612	NaN	1	0	Median	1.1141	0.89612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	240470000	116700000	123760000	240470000	116700000	123760000	0	0	0	0	0	0	0	0	0	14148	4848	13420	85474	115421	115421			1	
ETLVYLTHLDYVDTER	0	Unmodified	1965.9684	0.96837211	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.81		8							5	3	5	3	2	78.407	74.715	2;3	7.8176E-70	39765	160513_QHF_FH_JSI10Kac_6	260.08	225.39			1.0958	1.04	22.554	12	1	Median	1.5013	1.2741	22.167	3	0	Plateau	0.69073	0.8406	8.5723	4	1	Median	1.1158	1.1405	22.269	3	0	Median	1.2025	1.292	13.4	2	0	Median	1226600000	631680000	594930000	303720000	145990000	157720000	442780000	270000000	172780000	368820000	172540000	196280000	111300000	43143000	68152000	14149	231	13421	85475;85476;85477;85478;85479;85480;85481;85482;85483;85484;85485;85486;85487	115422;115423;115424;115425;115426;115427;115428;115429;115430;115431;115432;115433;115434;115435;115436	115436			14	
ETMEKAVEEK	2	Acetyl (K);Oxidation (M)	1250.57	0.5700332	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		18.409	10.993	2	0.023648	7910	160513_QHF_FH_JSI11Kac_3	43.308	28.157			0.25196	0.24673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25196	0.24673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3789500	2717400	1072100	0	0	0	0	0	0	3789500	2717400	1072100	0	0	0	14150	982	13422	85488	115437	115437	765		1	
ETMQSLNDR	0	Oxidation (M)	1108.4819	0.48188689	842;77	P05783;CON__Q92764;CON__Q497I4;Q92764	KRT18;KRT35	Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.79	10	1			1	3	2			2	3	6	6	11.541	8.6586	2	8.6642E-08	12838	160511_QHF_FH_JSI11i_1	142.56	112.38		+	1.0152	1.0278	50.852	17	0	Median	1.3814	1.1423	9.9712	2	0	Median	0.81811	0.97012	75.154	3	0	Median	1.0489	1.013	52.483	6	0	Median	1.0022	1.0947	48.337	6	0	Median	4714100000	2454400000	2259800000	1187200000	497690000	689510000	614810000	378980000	235830000	1130300000	582020000	548230000	1781900000	995660000	786190000	14151	842;77	13423	85489;85490;85491;85492;85493;85494;85495;85496;85497;85498;85499;85500;85501;85502;85503;85504;85505	115438;115439;115440;115441;115442;115443;115444;115445;115446;115447;115448;115449;115450;115451;115452;115453;115454;115455;115456	115440		37	18	
ETMQSLNDR	0	Unmodified	1092.487	0.48697227	842;77	P05783;CON__Q92764;CON__Q497I4;Q92764	KRT18;KRT35	Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	5.76	4	4	2			4	3			4	5	4	4	18.451	14.064	2	2.577E-16	12824	160511_QHF_FH_JSI11i_1	174.02	139.21		+	0.98125	0.99476	10.582	16	0	Median	1.1973	1.0085	10.603	3	0	Median	0.74358	0.91895	9.736	5	0	Median	1.0155	1.0002	4.4022	4	0	Median	0.99019	1.0836	9.9124	4	0	Median	15297000000	7616700000	7680700000	3628000000	1785000000	1843000000	3998700000	2135600000	1863100000	3584100000	1601400000	1982700000	4086600000	2094700000	1991900000	14152	842;77	13423	85506;85507;85508;85509;85510;85511;85512;85513;85514;85515;85516;85517;85518;85519;85520;85521;85522	115457;115458;115459;115460;115461;115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484	115458			28	
ETMTPGYPQDLDIIDGR	0	Unmodified	1919.8935	0.8934926	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.903	77.429	2	1.0564E-07	70250	160511_QHF_FH_JSI10i_1	138.42	119.8			0.9232	0.86784	8.4939	4	1	Median	0.96207	0.7765	NaN	1	1	Median	0.73551	0.84531	NaN	1	0	Median	0.99581	0.94909	NaN	1	0	Median	0.88591	0.89096	NaN	1	0	Median	108310000	56842000	51472000	18934000	9491100	9442700	29465000	14358000	15107000	32711000	17393000	15318000	27206000	15600000	11605000	14153	3024	13424	85523;85524;85525;85526	115485;115486;115487;115488;115489	115488			4	
ETMVTSTTEPSR	0	Oxidation (M)	1353.6082	0.60820962	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	2	3	3	14.437	10.25	2	8.0988E-13	7190	160513_QHF_FH_JSI11Kac_3	130.94	119.45			0.95432	1.0112	10.619	9	0	Median	1.1012	0.91005	NaN	1	0	Median	0.71257	0.83362	3.6123	2	0	Median	1.1311	1.0835	4.2743	3	0	Median	0.95432	1.0112	2.7212	3	0	Plateau	305610000	159340000	146270000	53827000	25345000	28482000	73073000	45874000	27199000	86376000	40436000	45941000	92333000	47689000	44645000	14154	1050	13425	85527;85528;85529;85530;85531;85532;85533;85534;85535	115490;115491;115492;115493;115494;115495;115496;115497;115498;115499;115500;115501;115502	115495		671	13	
ETMVTSTTEPSR	0	Unmodified	1337.6133	0.613295	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	2	2	1	21.55	16.522	2	1.877E-31	16585	160511_QHF_FH_JSI11i_1	190.96	175.81			1.0302	0.94859	6.1015	7	0	Median	1.1338	0.92198	4.024	2	0	Median	0.78823	0.93238	2.1188	2	0	Median	1.0621	1.041	2.8638	2	0	Median	0.94026	1.0039	NaN	1	0	Median	2968900000	1536400000	1432400000	720820000	346550000	374270000	886510000	471420000	415090000	695240000	380740000	314500000	666300000	337730000	328560000	14155	1050	13425	85536;85537;85538;85539;85540;85541;85542	115503;115504;115505;115506;115507;115508;115509;115510;115511	115503			9	
ETNDTWNSQFGK	1	Unmodified	1425.6161	0.61607219	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.318	35.916	2	1.5781E-05	32243	160511_QHF_FH_JSI11i_1	113.46	90.105			1.2867	1.3824	6.5579	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2605	1.5052	NaN	1	0	Median	1.3844	1.3231	NaN	1	0	Median	1.2867	1.3824	NaN	1	0	Median	138430000	60233000	78199000	0	0	0	53953000	26909000	27043000	47335000	16243000	31093000	37144000	17081000	20063000	14156	3282	13426	85543;85544;85545	115512;115513;115514;115515	115513			3	
ETNEPVK	1	Unmodified	815.4025	0.40249759	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	2	2	6.0066	2.2164	2	0.0059444	3449	160511_QHF_FH_JSI12i_1	95.352	47.179			0.76879	0.83205	16.617	8	2	Median	1.1723	0.94448	NaN	1	0	Median	0.76106	0.90875	19.245	3	1	Median	0.7463	0.73615	4.8484	2	0	Median	0.75088	0.79797	20.401	2	1	Median	6088400000	3410900000	2677500000	915270000	431240000	484030000	1857300000	1065100000	792180000	1773700000	1030600000	743090000	1542100000	883910000	658240000	14157	1023	13427	85546;85547;85548;85549;85550;85551;85552;85553	115516;115517;115518;115519;115520;115521	115517			6	
ETNFQVMQMK	1	Unmodified	1254.5737	0.57367879	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		4								1	2	1		49.539	48.694	2	0.00080553	42916	160511_QHF_FH_JSI10i_2	76.827	48.1			1.0031	1.0087	5.892	3	1	Plateau	1.1487	0.97061	NaN	1	0	Median	0.73427	0.89852	NaN	1	1	Median	1.0031	1.0087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101940000	50716000	51220000	29317000	13893000	15424000	31955000	15838000	16116000	40664000	20984000	19680000	0	0	0	14158	2485	13428	85554;85555;85556;85557	115522;115523;115524	115524			3	
ETNISYSQEADDR	0	Unmodified	1526.6485	0.64849453	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.916	22.383	2	1.9157E-05	19159	160511_QHF_FH_JSI9i_1	121.68	94.565			0.76296	0.74175	15.446	4	1	Median	0.99809	0.83039	NaN	1	0	Median	0.56701	0.66018	NaN	1	0	Median	0.92923	0.89106	NaN	1	0	Median	0.62644	0.66257	NaN	1	1	Median	164500000	93049000	71446000	45034000	21717000	23317000	41461000	26188000	15273000	37302000	18946000	18356000	40698000	26197000	14500000	14159	93	13429	85558;85559;85560;85561	115525;115526;115527	115527			2	
ETNISYSQEADDRVFR	0	Unmodified	1928.8864	0.88643339	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			44.809	43.844	3	0.0034156	38558	160511_QHF_FH_JSI10i_2	48.391	41.618			0.82631	1.0154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82631	1.0154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82730000	46417000	36313000	0	0	0	82730000	46417000	36313000	0	0	0	0	0	0	14160	93	13430	85562	115528;115529	115528			2	
ETNLDSLPLVDTHSK	1	Unmodified	1667.8366	0.83662965	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	9	9					3			4	6	4	7	60.584	58.169	2;3	1.5673E-16	52611	160511_QHF_FH_JSI11i_1	121.24	96.384			1.0201	1.1032	22.802	18	5	Median	1.2615	1.082	16.026	3	1	Median	0.95672	1.1415	21.203	6	2	Median	1.0026	1.0155	32.757	3	0	Median	1.0675	1.1787	26.168	6	2	Median	1899600000	921610000	978000000	307290000	136290000	171000000	513700000	244630000	269070000	535740000	267450000	268290000	542890000	273240000	269650000	14161	913	13431	85563;85564;85565;85566;85567;85568;85569;85570;85571;85572;85573;85574;85575;85576;85577;85578;85579;85580;85581;85582;85583	115530;115531;115532;115533;115534;115535;115536;115537;115538;115539;115540;115541;115542;115543;115544;115545;115546;115547;115548;115549;115550;115551;115552;115553;115554;115555;115556;115557;115558;115559;115560;115561;115562;115563;115564;115565	115533			35	
ETPAATEAPSSTPK	1	Unmodified	1385.6674	0.66743906	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.32	4.82	4	1	2	3	9	4	2			3	5	9	8	23.648	17.593	2;3	1.924E-45	5404	160513_QHF_FH_JSI9Kac_3	196.16	177.38			0.98614	0.99898	10.689	22	0	Median	1.1312	0.99033	3.1557	3	0	Plateau	0.86464	1.0013	7.7326	5	0	Median	1.0169	0.99978	13.038	8	0	Median	0.98589	1.0562	11.015	6	0	Median	22177000000	9269700000	12907000000	5239400000	1873500000	3365900000	5673100000	2595800000	3077300000	5581400000	2177800000	3403600000	5683100000	2622600000	3060600000	14162	2101	13432	85584;85585;85586;85587;85588;85589;85590;85591;85592;85593;85594;85595;85596;85597;85598;85599;85600;85601;85602;85603;85604;85605;85606;85607;85608	115566;115567;115568;115569;115570;115571;115572;115573;115574;115575;115576;115577;115578;115579;115580;115581;115582;115583;115584;115585;115586;115587;115588;115589;115590;115591;115592;115593;115594;115595;115596;115597;115598;115599;115600;115601;115602;115603;115604;115605;115606;115607;115608;115609;115610;115611;115612;115613;115614;115615;115616;115617	115594			52	
ETPALTINR	0	Unmodified	1013.5506	0.55055881	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.28	5	5					3			2	4	4	3	37.284	34.416	2	0.00043912	30338	160511_QHF_FH_JSI9i_1	80.684	56.052			1.0673	1.0775	26.34	13	3	Median	1.3578	1.1277	2.2939	2	0	Median	0.8134	0.97696	5.7115	4	2	Median	1.4648	1.4522	38.029	4	1	Median	1.0172	1.0968	18.192	3	0	Median	2273200000	1102300000	1170900000	352820000	143660000	209160000	935920000	476580000	459340000	542170000	238540000	303630000	442310000	243570000	198750000	14163	1545	13433	85609;85610;85611;85612;85613;85614;85615;85616;85617;85618;85619;85620;85621	115618;115619;115620;115621;115622;115623;115624;115625;115626;115627;115628;115629;115630;115631;115632;115633	115625			16	
ETPEEVAADVLAEVITAAVR	0	Unmodified	2082.0845	0.084464496	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.2	0.4		4	1							2		2	1	104.96	104.88	3	1.4163E-07	92532	160511_QHF_FH_JSI11i_2	98.165	88.507			0.91235	0.83367	46.78	2	1	Median	0.67546	0.59887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2323	1.1605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21446000	10194000	11251000	5068700	3462700	1606000	0	0	0	16377000	6731700	9645200	0	0	0	14164	384	13434	85622;85623;85624;85625;85626	115634;115635;115636;115637;115638;115639	115639			6	
ETPEHPLK	1	Unmodified	949.4869	0.48689592	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	9.2972	8.8411	2	0.0052958	6432	160511_QHF_FH_JSI11i_2	66.073	38.548			1.1541	1.1836	14.916	3	0	Median	1.3767	1.1993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1541	1.1836	NaN	1	0	Median	0.81105	0.92039	NaN	1	0	Median	159070000	79026000	80048000	48795000	20535000	28260000	0	0	0	58552000	27912000	30640000	51727000	30579000	21148000	14165	3499	13435	85627;85628;85629	115640;115641;115642;115643	115643			4	
ETPEHPLKQIK	2	Acetyl (K)	1360.7351	0.73506511	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		38.078	28.125	3	0.041899	16333	160513_QHF_FH_JSI11Kac_5	32.999	24.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14166	3499	13436	85630	115644	115644			1	
ETPENLAK	1	Unmodified	900.45526	0.45526144	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	18.004	15.204	2	0.015178	13058	160511_QHF_FH_JSI12i_1	50.703	24.809			0.93251	0.90038	17.785	6	0	Median	1.1668	0.93625	NaN	1	0	Median	0.80911	0.95106	29.366	2	0	Median	0.9808	0.95507	13.867	2	0	Median	0.70374	0.73904	NaN	1	0	Median	950700000	496900000	453810000	242550000	112000000	130540000	253080000	135390000	117690000	209700000	113860000	95840000	245380000	135640000	109730000	14167	4982	13437	85631;85632;85633;85634;85635;85636	115645;115646;115647;115648	115646			4	
ETPETFYIGK	1	Unmodified	1183.5761	0.57610486	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.763	49.097	2	0.0027322	44610	160511_QHF_FH_JSI12i_1	60.828	39.528			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14168	3212	13438	85637	115649	115649			1	
ETPFELIEALLK	1	Unmodified	1401.7755	0.77553294	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	3	2	2	2	103.8	103.72	2	6.6883E-11	91478	160511_QHF_FH_JSI9i_2	148.56	100.27			0.99371	1.0143	14.259	8	0	Median	0.92863	0.79332	10.398	2	0	Median	0.8609	1.0217	10.009	2	0	Median	1.0996	1.0658	6.7749	2	0	Median	0.99371	1.0451	4.461	2	0	Median	1028700000	516140000	512530000	119960000	56692000	63270000	134850000	75413000	59433000	412450000	201940000	210500000	361410000	182090000	179320000	14169	2265	13439	85638;85639;85640;85641;85642;85643;85644;85645;85646	115650;115651;115652;115653;115654;115655;115656;115657;115658;115659;115660;115661;115662;115663;115664	115657			15	
ETPHSPGVEDAPIAK	1	Unmodified	1546.7627	0.76273643	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1.25	0.433	3	1									1	2	1	31.114	30.734	3	2.267E-05	27702	160511_QHF_FH_JSI12i_1	106.42	93.287			1.3693	1.3952	32.456	4	0	Median	NaN	NaN	NaN	0	0	Median	0.72277	0.8584	NaN	1	0	Median	1.6996	1.685	6.4248	2	0	Median	1.1466	1.2089	NaN	1	0	Median	389910000	191850000	198070000	0	0	0	123940000	74967000	48972000	156800000	64613000	92189000	109170000	52268000	56905000	14170	5293	13440	85647;85648;85649;85650	115665	115665			1	
ETPLDLQHR	0	Unmodified	1107.5673	0.5672715	4408	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	27.073	26.4	2;3	0.00053311	22126	160511_QHF_FH_JSI11i_2	72.243	64.023			0.93982	0.98815	20.539	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8078	0.80143	15.44	2	1	Median	0.95987	1.0833	NaN	1	0	Median	124460000	73664000	50801000	0	0	0	0	0	0	74093000	44190000	29904000	50371000	29474000	20897000	14171	4408	13441	85651;85652;85653	115666;115667;115668	115667			3	
ETPPDALILESPFTNIREEAK	1	Unmodified	2369.2115	0.21145592	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								2		1	91.181	90.915	3	1.6604E-06	80734	160511_QHF_FH_JSI10i_2	78.413	69.919			0.92021	1.0154	19.773	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9236	1.1678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91684	0.88291	NaN	1	1	Median	85728000	32649000	53080000	0	0	0	41110000	17032000	24078000	0	0	0	44618000	15617000	29002000	14172	3509	13442	85654;85655;85656	115669;115670;115671;115672;115673	115670			5	
ETPPPLVPPAAR	0	Unmodified	1243.6925	0.69247202	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	50.647	47.065	2	0.00098191	42425	160511_QHF_FH_JSI12i_1	66.27	49.73			1.0152	1.0282	2.3648	6	0	Median	1.1781	0.98331	NaN	1	0	Median	0.86007	1.0231	NaN	1	0	Median	1.0442	1.0197	3.0542	2	0	Median	0.98869	1.0362	0.38793	2	0	Median	766650000	375000000	391650000	210060000	92001000	118050000	180480000	103520000	76958000	186450000	80805000	105650000	189650000	98668000	90985000	14173	4355	13443	85657;85658;85659;85660;85661;85662	115674;115675;115676;115677;115678;115679;115680;115681;115682;115683;115684;115685;115686;115687	115676			14	
ETPQQKYQR	1	Acetyl (K)	1218.5993	0.59929991	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		22.478	15.013	2	0.060472	9768	160513_QHF_FH_JSI11Kac_3	41.448	33.405			0.47132	0.50994	121.89	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0138	1.2073	NaN	1	0	Median	0.21911	0.21538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7021500	5015200	2006300	0	0	0	1932200	932390	999840	5089300	4082800	1006500	0	0	0	14174	2441	13444	85663;85664	115688	115688			1	
ETPSATK	1	Unmodified	732.36538	0.3653838	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	5.4728	4.9987	2	0.044649	2707	160511_QHF_FH_JSI9i_1	45.081	45.081			1.1871	1.1066	18.563	2	0	Median	1.1574	0.97046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2177	1.2618	NaN	1	0	Median	2197800000	921070000	1276700000	2004200000	821880000	1182300000	0	0	0	0	0	0	193550000	99186000	94366000	14175	1778	13445	85665;85666	115689;115690	115690			2	
ETPSQENGPTAK	1	Unmodified	1257.5837	0.58370943	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	1	3	3	10.278	6.4831	2	4.5186E-08	6363	160511_QHF_FH_JSI11i_1	139.43	102.73			0.79696	0.83379	13.584	8	1	Median	1.093	0.90765	NaN	1	0	Median	0.66881	0.79542	NaN	1	0	Median	0.7369	0.70924	14.326	3	0	Median	0.86192	0.91544	11.44	3	1	Median	1475100000	869440000	605680000	360290000	194660000	165630000	436290000	285750000	150530000	341970000	200600000	141370000	336570000	188420000	148150000	14176	279	13446	85667;85668;85669;85670;85671;85672;85673;85674	115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701	115692			11	
ETPSQENGPTAKAYTGFSSNSER	1	Acetyl (K)	2499.115	0.11498936	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	56.991	47.817	3	0.0069178	25397	160513_QHF_FH_JSI12Kac_3	42.806	34.416			0.97922	1.0725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97922	1.0725	NaN	1	0	Median	4949800	2489000	2460800	0	0	0	0	0	0	0	0	0	4949800	2489000	2460800	14177	279	13447	85675	115702	115702	150		1	
ETPSSANGPSR	0	Unmodified	1101.5051	0.50506518	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	7.4407	4.1376	2	0.034839	3113	160513_QHF_FH_JSI11Kac_3	42.395	31.927			1.0613	1.0945	10.333	7	0	Median	1.4385	1.1733	NaN	1	0	Median	0.85481	1.0065	11.845	2	0	Median	1.1487	1.1371	10.931	2	0	Median	0.99376	1.0652	12.505	2	0	Median	858330000	432240000	426090000	172470000	80019000	92449000	262870000	137360000	125510000	202460000	89644000	112810000	220530000	125210000	95319000	14178	732	13448	85676;85677;85678;85679;85680;85681;85682	115703;115704;115705;115706	115705			4	
ETQAINSSLSTLGLVIMALSNK	1	Unmodified	2289.225	0.2249975	4486	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.32	103.33	3	4.1439E-05	90074	160511_QHF_FH_JSI12i_3	60.464	44.764			1.8451	1.9598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8451	1.9598	NaN	1	1	Median	12816000	3574800	9240800	0	0	0	0	0	0	0	0	0	12816000	3574800	9240800	14179	4486	13449	85683	115707	115707			1	
ETQALILAPTR	0	Unmodified	1211.6874	0.68738664	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	5.97	4	4				4	3			2	4	4	5	54.163	49.069	2	1.7736E-29	44060	160511_QHF_FH_JSI10i_1	185.77	135.73			0.90857	0.97543	18.818	15	1	Median	1.1728	0.98368	6.858	2	0	Median	0.81769	0.98095	5.1601	4	0	Median	0.99891	0.97792	5.5236	4	0	Median	0.88541	0.91849	33.813	5	1	Median	3053700000	1560400000	1493300000	736450000	327860000	408590000	766380000	419050000	347330000	897970000	469550000	428420000	652950000	343950000	309000000	14180	1481	13450	85684;85685;85686;85687;85688;85689;85690;85691;85692;85693;85694;85695;85696;85697;85698	115708;115709;115710;115711;115712;115713;115714;115715;115716;115717;115718;115719;115720;115721;115722;115723;115724;115725;115726;115727;115728;115729;115730;115731;115732;115733;115734;115735;115736;115737;115738	115720			31	
ETQALVLAPTR	0	Unmodified	1197.6717	0.67173657	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.12	4	1				3	2			1	2	3	4	48.987	43.209	2	9.1686E-10	38283	160511_QHF_FH_JSI9i_1	136.96	118.79			1.0267	1.0571	14.615	9	1	Median	1.3742	1.1204	NaN	1	0	Median	1.0603	1.2412	5.3729	2	0	Median	1.0786	1.0571	12.351	3	0	Median	0.86497	0.91772	6.7112	3	1	Median	982320000	469440000	512880000	223960000	101940000	122020000	235490000	115010000	120480000	266200000	123720000	142480000	256670000	128770000	127900000	14181	2519	13451	85699;85700;85701;85702;85703;85704;85705;85706;85707;85708	115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752;115753	115749			14	
ETQENIK	1	Unmodified	860.42396	0.42396131	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.4017	5.7953	2	0.02833	3486	160511_QHF_FH_JSI9i_1	55.441	3.8688			0.85382	0.70075	NaN	1	1	Median	0.85382	0.70075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	711310000	532340000	178970000	711310000	532340000	178970000	0	0	0	0	0	0	0	0	0	14182	1787	13452	85709	115754	115754			1	
ETQFAQIFEPLHK	1	Unmodified	1586.8093	0.80929269	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		74.546	73.818	3	0.00030518	65155	160511_QHF_FH_JSI9i_2	64.104	58.926			0.95114	0.977	22.004	3	1	Plateau	1.0412	0.87628	NaN	1	0	Median	0.52552	0.63957	NaN	1	1	Median	0.95114	0.977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	149630000	83849000	65777000	40492000	19810000	20682000	51162000	30097000	21066000	57971000	33942000	24029000	0	0	0	14183	4988	13453	85710;85711;85712	115755;115756;115757	115755			3	
ETQFHGSEGR	0	Unmodified	1146.5054	0.50539953	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		6.3462	5.9174	2	0.0010969	3972	160511_QHF_FH_JSI10i_2	78.939	62.795			0.95778	1.1896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95778	1.1896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19337000	10703000	8634000	0	0	0	19337000	10703000	8634000	0	0	0	0	0	0	14184	648	13454	85713;85714;85715	115758;115759;115760	115760			3	
ETQIFVEK	1	Unmodified	992.51786	0.51786169	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		33.286	32.674	2	0.0078478	29075	160511_QHF_FH_JSI10i_1	68.224	42.33			1.2024	1.3942	59.333	3	3	Median	1.7183	1.3942	NaN	1	1	Median	1.2024	1.406	NaN	1	1	Median	0.51744	0.50102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	237340000	122390000	114960000	68434000	28089000	40346000	91982000	54606000	37376000	76925000	39692000	37233000	0	0	0	14185	2956	13455	85716;85717;85718	115761;115762;115763	115762			3	
ETQKSIYYITGESK	2	Acetyl (K)	1687.8305	0.83048164	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.452						5	2				3	2	2	65.71	55.882	2;3	1.4021E-06	29089	160513_QHF_FH_JSI12Kac_3	105.65	96.92			0.74737	0.79186	35.265	7	0	Median	NaN	NaN	NaN	0	0	Median	0.89124	1.0457	12.725	3	0	Median	0.53682	0.52834	35.998	2	0	Median	0.69095	0.73409	10.713	2	0	Median	48284000	29163000	19121000	0	0	0	18381000	10559000	7821600	16573000	10042000	6530800	13330000	8561900	4768400	14186	898	13456	85719;85720;85721;85722;85723;85724;85725	115764;115765;115766;115767;115768;115769;115770;115771;115772;115773	115769	649		10	
ETQNMAWSK	1	Unmodified	1093.4862	0.48624399	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	22.503	21.831	2	4.1819E-08	19210	160511_QHF_FH_JSI12i_1	128.27	95.915			0.79921	0.71062	78.167	2	1	Median	1.5074	1.2351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.42373	0.40888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	337080000	180170000	156910000	123550000	39667000	83882000	0	0	0	213530000	140500000	73027000	0	0	0	14187	219	13457	85726;85727;85728	115774;115775;115776	115775			3	
ETQNMAWSKPR	1	Acetyl (K)	1388.6507	0.65068356	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		48.638	38.217	2	0.0045174	22542	160513_QHF_FH_JSI11Kac_4	67.08	62.467			0.61997	0.664	79.226	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98821	1.1627	NaN	1	0	Median	0.38894	0.3792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7562100	4722900	2839200	0	0	0	1883900	682750	1201100	5678200	4040100	1638100	0	0	0	14188	219	13458	85729;85730	115777	115777	117		1	
ETQSQLETER	0	Unmodified	1219.5681	0.56805936	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	14.347	11	2	1.3617E-34	9297	160511_QHF_FH_JSI9i_1	210.08	86.355			0.94138	0.93331	18.29	7	0	Median	1.1505	0.93331	NaN	1	0	Median	0.67522	0.79791	20.777	2	0	Median	1.0983	1.0823	22.256	2	0	Median	0.96492	1.0306	0.44469	2	0	Median	1755100000	854250000	900810000	394130000	186370000	207760000	439430000	253830000	185600000	431170000	200490000	230670000	490340000	213560000	276790000	14189	1085	13459	85731;85732;85733;85734;85735;85736;85737	115778;115779;115780;115781;115782;115783;115784;115785;115786;115787;115788;115789	115786			12	
ETQTDSISR	0	Unmodified	1035.4833	0.4832671	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.4547	8.1053	2	0.0007107	5992	160511_QHF_FH_JSI10i_1	75.571	34.343			1.0548	1.0702	5.8955	4	0	Median	1.3491	1.1056	NaN	1	0	Median	0.84216	0.97388	NaN	1	0	Median	1.1199	1.0992	NaN	1	0	Median	0.99349	1.042	NaN	1	0	Median	757230000	376890000	380340000	170910000	73009000	97897000	202350000	109440000	92911000	223280000	107840000	115440000	160700000	86606000	74093000	14190	227	13460	85738;85739;85740;85741	115790;115791;115792;115793;115794;115795	115793			6	
ETQTECEWTVDTSK	1	Unmodified	1712.7199	0.71994491	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.236	36.623	2	1.9981E-21	32911	160511_QHF_FH_JSI11i_1	175.48	162.87			1.102	1.1678	112.5	4	1	Linear	0.13888	0.1131	NaN	1	1	Median	0.91011	1.0598	NaN	1	0	Median	0.9049	0.86282	NaN	1	0	Median	1.2232	1.2653	NaN	1	0	Median	161840000	90236000	71608000	13916000	11752000	2163800	48277000	30874000	17403000	47076000	25284000	21792000	52575000	22326000	30250000	14191	1085	13461	85742;85743;85744;85745	115796;115797;115798;115799;115800;115801	115797			6	
ETQTEQSLER	0	Unmodified	1219.5681	0.56805936	5822				yes	yes	0	0	0	0			By MS/MS		13	0						1						1		17.34	9.9439	2	0.050329	7387	160513_QHF_FH_JSI11Kac_3	37.476	0	+		0.94138	0.9247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94138	0.9247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19038000	11039000	7998100	0	0	0	0	0	0	19038000	11039000	7998100	0	0	0	14192	5822	13462	85746	115802	115802			1	
ETQTPVMAQPK	1	Oxidation (M)	1244.6071	0.60708741	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									3	1	1	1	15.518	14.864	2	0.0022764	11027	160511_QHF_FH_JSI10i_1	63.076	35.063			1.0452	0.92383	30.793	6	2	Median	1.1952	0.99225	13.502	3	2	Median	0.40851	0.46529	NaN	1	0	Median	1.1034	1.0652	NaN	1	0	Median	0.85224	0.86013	NaN	1	0	Median	177480000	93289000	84195000	97717000	46278000	51440000	25387000	17533000	7854500	25950000	12250000	13701000	28429000	17230000	11199000	14193	2400	13463	85747;85748;85749;85750;85751;85752	115803;115804;115805;115806;115807;115808;115809	115806		1943	7	
ETQTPVMAQPK	1	Unmodified	1228.6122	0.61217279	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.559	22.025	2	1.0188E-05	18734	160511_QHF_FH_JSI9i_1	126.55	87.294			1.1225	1.0811	13.531	4	3	Median	1.2818	1.037	NaN	1	1	Median	0.73691	0.85235	NaN	1	1	Median	1.1772	1.1436	NaN	1	1	Median	1.0703	1.1272	NaN	1	0	Median	965570000	456740000	508830000	267000000	111360000	155640000	203670000	119340000	84326000	268910000	114190000	154720000	225990000	111840000	114140000	14194	2400	13463	85753;85754;85755;85756	115810;115811;115812;115813	115813			4	
ETQVILLDTPGIISPGK	1	Unmodified	1779.9982	0.99821567	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	88.499	88.145	2;3	7.4617E-12	78362	160511_QHF_FH_JSI9i_1	115.12	105.93			0.98605	0.96638	18.283	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0389	1.1778	NaN	1	1	Median	0.95099	0.9105	NaN	1	0	Median	0.88209	0.88605	20.696	2	2	Median	98411000	51369000	47042000	0	0	0	22553000	11949000	10604000	22476000	10459000	12018000	53382000	28961000	24420000	14195	549	13464	85757;85758;85759;85760;85761;85762	115814;115815;115816;115817;115818;115819;115820	115820			7	
ETSAATLSPGASSR	0	Unmodified	1333.6474	0.64737232	5730	Q9Y6I9	TEX264	Testis-expressed sequence 264 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	20.496	17.764	2	2.2526E-08	15241	160511_QHF_FH_JSI10i_1	101.39	77.363			0.88527	0.89371	13.913	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76991	0.76606	10.864	2	2	Median	0.88527	0.93652	NaN	1	0	Median	76450000	47322000	29128000	0	0	0	0	0	0	38785000	25622000	13163000	37665000	21700000	15965000	14196	5730	13465	85763;85764;85765;85766	115821;115822;115823;115824;115825	115825			5	
ETSEELLPPPVQTQIK	1	Unmodified	1807.9567	0.95674479	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	69.134	68.647	2;3	4.7528E-10	62143	160511_QHF_FH_JSI10i_1	142.1	116.05			1.0185	1.0047	15.355	6	0	Median	1.1776	0.98405	NaN	1	0	Median	0.90287	1.0555	20.945	2	0	Median	1.1957	1.1464	23.529	2	0	Median	0.96396	1.0257	NaN	1	0	Median	464710000	227590000	237120000	96177000	45755000	50422000	139990000	76132000	63857000	135140000	62485000	72657000	93397000	43218000	50180000	14197	3500	13466	85767;85768;85769;85770;85771;85772	115826;115827;115828;115829;115830;115831;115832;115833;115834;115835	115832			10	
ETSELGGSDVSILDTTR	0	Unmodified	1778.8534	0.85340193	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		62.294	61.662	2	2.1187E-15	54717	160511_QHF_FH_JSI9i_1	192.18	177.3			0.7074	0.68191	6.4513	3	0	Median	0.85792	0.68823	NaN	1	0	Median	0.52313	0.61281	NaN	1	0	Median	0.7074	0.68191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113960000	64005000	49952000	39704000	17419000	22285000	40812000	27684000	13128000	33442000	18902000	14540000	0	0	0	14198	3009	13467	85773;85774;85775	115836;115837;115838;115839;115840	115840			5	
ETSGNLEQLLLAVVK	1	Unmodified	1612.9036	0.903587	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	102.16	102.05	2;3	2.1664E-21	87954	160511_QHF_FH_JSI12i_2	175.48	148.15			0.82902	0.89766	12.994	6	2	Median	NaN	NaN	NaN	0	0	Median	0.66534	0.82624	6.1	2	1	Median	0.94498	0.95321	21.597	2	1	Median	0.87706	0.97056	5.4149	2	0	Median	472310000	264630000	207690000	0	0	0	108950000	67686000	41264000	199860000	116140000	83724000	163500000	80804000	82697000	14199	916	13468	85776;85777;85778;85779;85780;85781	115841;115842;115843;115844;115845	115841			5	
ETSIFSYREDPIVYEIHPTK	1	Unmodified	2423.2009	0.20089124	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	75.127	74.985	3;4	8.6676E-12	66898	160511_QHF_FH_JSI11i_3	138.75	123.16			1.0357	0.99415	10.478	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0499	0.99931	0.73131	2	0	Median	0.81708	0.83363	NaN	1	0	Median	320220000	155940000	164280000	0	0	0	0	0	0	254900000	127770000	127120000	65323000	28171000	37152000	14200	907	13469	85782;85783;85784;85785	115846;115847;115848;115849;115850;115851	115848			6	
ETSLAENIWQEQPHSK	1	Unmodified	1895.9014	0.90135517	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	52.735	51.784	3	0.00011608	44381	160511_QHF_FH_JSI12i_2	67.646	62.936			1.0589	1.1007	15.143	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71148	0.87461	NaN	1	0	Median	1.1232	1.1007	NaN	1	0	Median	1.0589	1.1638	NaN	1	0	Median	116630000	54064000	62564000	0	0	0	34349000	14658000	19690000	48783000	23240000	25543000	33496000	16165000	17330000	14201	429	13470	85786;85787;85788	115852;115853	115852			2	
ETSLEETK	1	Unmodified	935.44476	0.44475633	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.262	9.8909	2	0.0023906	7773	160511_QHF_FH_JSI12i_1	78.516	24.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14202	3290	13471	85789	115854	115854			1	
ETSLHSPSNTSAPHSQGGIPPPTGI	0	Unmodified	2468.1932	0.1931801	2740	Q16563	SYPL1	Synaptophysin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	48.446	47.65	3	4.7753E-14	40804	160511_QHF_FH_JSI12i_2	111.66	108.51			0.99844	1.1026	8.9699	6	0	Median	1.378	1.211	NaN	1	0	Median	0.90697	1.1086	11.908	2	0	Median	1.1118	1.1	10.851	2	0	Median	0.91222	1.0237	NaN	1	0	Median	547350000	249180000	298170000	99717000	40916000	58801000	138850000	63573000	75280000	198920000	93949000	104970000	109860000	50738000	59121000	14203	2740	13472	85790;85791;85792;85793;85794;85795;85796	115855;115856;115857;115858;115859;115860;115861;115862;115863;115864;115865;115866;115867;115868;115869;115870;115871;115872;115873;115874;115875;115876;115877	115860			23	
ETSMTEPSEPGSK	1	Unmodified	1378.5922	0.5922252	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		17.967	17.781	2	3.1467E-09	15085	160511_QHF_FH_JSI11i_1	103.34	85.906			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14204	5368	13473	85797;85798	115878;115879	115878			2	
ETSMVHELNR	0	Unmodified	1214.5714	0.5713706	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	21.07	20.41	2;3	1.3766E-05	16860	160511_QHF_FH_JSI12i_2	101.65	79.409			0.96482	1.0844	62.388	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2901	1.5893	NaN	1	1	Median	1.15	1.1785	65.828	2	1	Median	0.45141	0.50431	NaN	1	0	Median	706900000	365830000	341070000	0	0	0	66468000	22994000	43475000	550430000	285020000	265410000	90009000	57821000	32188000	14205	1960	13474	85799;85800;85801;85802	115880;115881;115882;115883;115884	115881			5	
ETSMVHELNR	0	Oxidation (M)	1230.5663	0.56628523	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	1	0	By matching	By MS/MS	By matching	By MS/MS	2	0		7								1	2	2	2	21.227	20.42	2;3	0.0058421	17569	160511_QHF_FH_JSI10i_2	41.689	32.257			0.7225	0.8666	21.892	7	0	Median	0.7225	0.64371	NaN	1	0	Median	0.69715	0.85948	1.167	2	0	Median	0.73917	0.74811	27.556	2	0	Median	0.94426	1.0427	13.905	2	0	Median	354640000	215730000	138910000	36153000	20952000	15201000	80967000	55241000	25727000	109950000	70256000	39696000	127570000	69283000	58289000	14206	1960	13474	85803;85804;85805;85806;85807;85808;85809	115885;115886;115887	115887		1629	3	
ETSNLYK	1	Unmodified	853.41815	0.41814765	4336;500	O75323;Q9BPW8	GBAS;NIPSNAP1	Protein NipSnap homolog 2;Protein NipSnap homolog 1	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	11.202	10.952	2	0.032748	8589	160511_QHF_FH_JSI11i_1	50.966	24.857			0.66664	0.66043	20.18	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.5029	0.59985	NaN	1	0	Median	0.67359	0.66043	NaN	1	0	Median	0.42339	0.44824	NaN	1	0	Median	683320000	435270000	248050000	0	0	0	225860000	153000000	72860000	247950000	133070000	114880000	209510000	149200000	60307000	14207	500;4336	13475	85810;85811;85812	115888;115889	115888			2	
ETSPSHPGFK	1	Unmodified	1085.5142	0.5141733	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.951	10.75	2	0.042495	8231	160511_QHF_FH_JSI11i_2	44.753	28.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10236000	0	10236000	0	0	0	0	0	0	10236000	0	10236000	0	0	0	14208	681	13476	85813	115890	115890			1	
ETSSDVALASHILTALR	0	Unmodified	1782.9476	0.94757708	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							3	1	2	1	90.984	90.564	3	1.1928E-06	80247	160511_QHF_FH_JSI10i_2	102.03	88.891			0.96209	1.0484	10.14	5	1	Median	1.4192	1.246	NaN	1	0	Median	0.83811	1.0106	NaN	1	0	Median	1.0317	0.99793	6.9809	2	1	Median	0.95291	1.087	NaN	1	0	Median	247610000	119950000	127660000	51162000	18828000	32335000	50755000	27877000	22878000	92484000	47871000	44613000	53205000	25375000	27831000	14209	117	13477	85814;85815;85816;85817;85818;85819;85820	115891;115892;115893;115894;115895;115896;115897;115898;115899;115900;115901;115902;115903	115902			13	
ETSSTGEEALVAAVR	0	Unmodified	1518.7526	0.75256567	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	51.088	50.466	2	1.4259E-06	44873	160511_QHF_FH_JSI9i_1	133.05	110.31			0.91493	0.95225	13.571	5	3	Median	1.1643	0.95225	NaN	1	0	Median	0.68509	0.79735	16.611	2	2	Median	1.0116	0.9874	NaN	1	0	Median	0.91493	0.9664	NaN	1	1	Median	228150000	119890000	108260000	47742000	24248000	23493000	76465000	41938000	34527000	53709000	27510000	26199000	50230000	26190000	24040000	14210	4749	13478	85821;85822;85823;85824;85825	115904;115905;115906;115907;115908;115909;115910	115910			7	
ETSTLQVEQNGDYGR	0	Unmodified	1695.77	0.77000665	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		31.514	30.904	2	1.4182E-29	27580	160511_QHF_FH_JSI11i_1	184.03	163.72			0.92626	0.99778	18.113	3	1	Median	1.1733	0.99778	NaN	1	1	Median	0.92626	1.0778	NaN	1	0	Median	0.77892	0.76325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113790000	56207000	57584000	31397000	13476000	17921000	41251000	21548000	19703000	41143000	21183000	19960000	0	0	0	14211	3206	13479	85826;85827;85828	115911;115912;115913;115914;115915	115911			5	
ETSVDPDMRK	1	Unmodified	1176.5445	0.54448715	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	3.41	8	4					1			4	3	3	3	14.027	12.822	2;3	3.3728E-05	10636	160511_QHF_FH_JSI10i_1	110.41	86.253			1.0826	1.0527	39.432	13	6	Median	1.0395	0.88075	53.107	4	2	Median	0.71366	0.82063	10.86	3	2	Median	1.0826	1.0527	47.283	3	2	Median	1.4049	1.4358	11.137	3	0	Median	1064500000	517700000	546840000	245690000	120780000	124910000	258580000	143110000	115470000	329940000	146610000	183330000	230340000	107210000	123140000	14212	1433	13480	85829;85830;85831;85832;85833;85834;85835;85836;85837;85838;85839;85840;85841	115916;115917;115918;115919;115920;115921;115922;115923;115924;115925	115921			10	
ETSVTPSNLWGGQGLLGVSIR	0	Unmodified	2170.1382	0.1382314	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.764	1	1	4							1	1	2	2	100.48	100.46	2;3	1.029E-45	87033	160511_QHF_FH_JSI12i_3	202.82	189.41			0.81919	0.77612	42.633	4	3	Median	1.3027	1.1338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66995	0.64309	NaN	1	1	Median	0.64671	0.6366	54.616	2	1	Median	105530000	52514000	53015000	23989000	8911600	15078000	0	0	0	10108000	6845500	3262800	71431000	36757000	34674000	14213	4793	13481	85842;85843;85844;85845;85846;85847	115926;115927;115928;115929;115930;115931;115932	115931			7	
ETSYEEALANQR	0	Unmodified	1409.6423	0.64228694	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.367	32.979	2	1.3187E-10	29444	160511_QHF_FH_JSI10i_1	141.91	129.34			0.83461	0.86336	5.1973	3	1	Median	NaN	NaN	NaN	0	0	Median	0.68336	0.81107	NaN	1	0	Median	0.94935	0.89922	NaN	1	0	Median	0.83461	0.86336	NaN	1	1	Median	187950000	122290000	65662000	0	0	0	63294000	41049000	22244000	72078000	47085000	24994000	52579000	34155000	18424000	14214	5213	13482	85848;85849;85850	115933;115934;115935;115936;115937	115937			5	
ETSYEEALANQRK	1	Unmodified	1537.7372	0.73724996	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	27.737	26.448	3	0.046014	22204	160511_QHF_FH_JSI12i_2	27.681	20.642			0.74641	0.81778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74641	0.81778	NaN	1	1	Median	19465000	10333000	9132300	0	0	0	0	0	0	0	0	0	19465000	10333000	9132300	14215	5213	13483	85851	115938	115938			1	
ETSYGLSFFK	1	Unmodified	1177.5655	0.56554017	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		4						4		2	2	2	2	74.595	68.902	2	7.8464E-05	62038	160511_QHF_FH_JSI9i_2	102.07	79.919			0.95047	0.99313	14.045	8	5	Median	1.0474	0.86676	16.513	2	1	Median	0.95435	1.1667	2.1573	2	1	Median	0.99995	0.99324	13.458	2	2	Median	0.89943	0.97585	5.2149	2	1	Median	439400000	211480000	227930000	88572000	43878000	44694000	107590000	41913000	65676000	136710000	71035000	65676000	106530000	54651000	51881000	14216	5645	13484	85852;85853;85854;85855;85856;85857;85858;85859	115939;115940;115941;115942;115943;115944;115945	115941			7	
ETTDTDTADQVIASFK	1	Unmodified	1740.8054	0.8053891	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	3.16	9		1		1					3	2	2	4	70.111	69.562	2;3	4.6647E-138	63418	160511_QHF_FH_JSI11i_1	348.72	348.72			0.76381	0.84737	57.862	8	0	Median	0.46852	0.38367	3.8157	2	0	Median	0.5289	0.62641	11.9	2	0	Median	1.6345	1.5884	0.23952	2	0	Median	1.0497	1.0851	4.1453	2	0	Median	2426900000	1223300000	1203700000	563810000	361980000	201820000	522580000	340290000	182280000	719630000	232230000	487410000	620900000	288750000	332150000	14217	361	13485	85860;85861;85862;85863;85864;85865;85866;85867;85868;85869;85870	115946;115947;115948;115949;115950;115951;115952;115953;115954;115955;115956;115957;115958;115959;115960;115961;115962;115963;115964;115965;115966;115967;115968;115969	115949			24	
ETTEAACR	0	Unmodified	936.39709	0.39709463	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	2	2	4.8714	2.9079	2	6.0187E-07	2532	160511_QHF_FH_JSI10i_1	152.47	102.43			1.1919	1.3478	31.382	4	1	Median	NaN	NaN	NaN	0	0	Median	1.045	1.2273	NaN	1	0	Median	0.78997	0.76681	NaN	1	1	Median	1.3853	1.491	1.0443	2	0	Median	597570000	282410000	315160000	0	0	0	194100000	105460000	88640000	146790000	74449000	72337000	256680000	102510000	154180000	14218	5526	13486	85871;85872;85873;85874;85875	115970;115971;115972;115973;115974	115973			5	
ETTEESIK	1	Unmodified	935.44476	0.44475633	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3242	8.9604	2	0.004134	6752	160511_QHF_FH_JSI10i_1	69.628	34.82			1.1718	0.97004	25.061	3	0	Median	1.1718	0.97004	NaN	1	0	Median	0.58601	0.69764	NaN	1	0	Median	1.1767	1.1408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1882300000	907040000	975300000	496000000	226750000	269240000	726690000	410500000	316200000	659650000	269790000	389860000	0	0	0	14219	5536	13487	85876;85877;85878;85879	115975;115976;115977;115978;115979;115980;115981	115979			7	
ETTESLHGDISSLK	1	Unmodified	1515.7417	0.74166663	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	37.324	36.584	2;3	7.1301E-07	31208	160511_QHF_FH_JSI11i_2	161.94	124.47			1.1848	1.2074	36.084	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3042	1.3486	15.643	2	1	Median	0.69991	0.7439	NaN	1	0	Median	181020000	95834000	85189000	0	0	0	0	0	0	163720000	86415000	77308000	17300000	9419400	7881000	14220	1443	13488	85880;85881;85882	115982;115983;115984;115985;115986	115984			5	
ETTEVDLLTK	1	Unmodified	1147.5972	0.59723423	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.4	4.8	4					1				2	1	2		50.134	47.219	2	0.00017418	41910	160511_QHF_FH_JSI9i_1	94.309	65.148			0.72654	0.76607	24.835	4	3	Median	0.58104	0.47496	NaN	1	1	Median	0.66032	0.76488	NaN	1	1	Median	0.82182	0.78584	3.3837	2	1	Median	NaN	NaN	NaN	0	0	Median	346930000	197260000	149680000	74026000	42299000	31727000	115610000	68927000	46688000	157290000	86033000	71261000	0	0	0	14221	5279	13489	85883;85884;85885;85886;85887	115987;115988;115989;115990;115991	115991			5	
ETTGTGPNVYHENDTIAK	1	Unmodified	1945.9017	0.9017491	2829	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		27.912	27.65	3	6.866E-09	24491	160511_QHF_FH_JSI11i_1	104.89	88.495			0.87831	0.94854	19.328	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90703	1.0875	NaN	1	1	Median	0.8505	0.82737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138840000	67207000	71634000	0	0	0	64469000	33406000	31064000	74371000	33801000	40570000	0	0	0	14222	2829	13490	85888;85889	115992;115993;115994	115993			3	
ETTIDGEELVK	1	Unmodified	1232.6136	0.61361257	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.449	43.227	2	0.0023176	38406	160511_QHF_FH_JSI9i_1	61.765	49.476			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14223	1779	13491	85890	115995	115995			1	
ETTNSMVESIK	1	Unmodified	1237.586	0.58601761	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	34.044	33.126	2	3.0503E-05	29108	160511_QHF_FH_JSI9i_1	99.973	72.719			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14224	4248	13492	85891;85892	115996;115997	115997			2	
ETTQKNFNNLYGTK	2	Acetyl (K)	1698.8213	0.82131394	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	1	0	0	1			By matching	By MS/MS	13	0						2						1	1	57.221	47.835	2	0.029259	25374	160513_QHF_FH_JSI12Kac_3	46.592	31.326			0.92623	0.96414	34.876	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74718	0.75342	NaN	1	0	Median	1.1482	1.2338	NaN	1	0	Median	2760300	1670700	1089500	0	0	0	0	0	0	1131500	812250	319280	1628700	858490	770250	14225	2494	13493	85893;85894	115998;115999	115998			2	
ETTSGTSTEPVK	1	Unmodified	1235.5881	0.5881261	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.8314	9.4211	2	0.00011763	7264	160511_QHF_FH_JSI12i_1	102.52	54.675			1.2744	1.1998	12.256	3	3	Plateau	1.6321	1.3304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1496	1.082	NaN	1	1	Median	1.2744	1.3449	NaN	1	1	Median	161720000	71471000	90250000	48116000	17239000	30877000	0	0	0	63328000	30716000	32612000	50278000	23517000	26761000	14226	5136	13494	85895;85896;85897;85898	116000;116001;116002;116003;116004	116001			5	
ETTTGYYK	1	Unmodified	961.43928	0.43927702	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	13.052	11.205	2	0.0028104	9320	160511_QHF_FH_JSI10i_1	77.282	58.552			0.93353	0.94601	10.659	5	0	Median	1.2452	1.0319	NaN	1	0	Median	0.94033	1.1067	NaN	1	0	Median	0.90068	0.87645	5.7366	2	0	Median	0.8884	0.94601	NaN	1	0	Median	1140300000	543860000	596440000	193760000	90597000	103160000	301840000	145700000	156140000	306900000	150660000	156240000	337810000	156900000	180900000	14227	1526	13495	85899;85900;85901;85902;85903	116005;116006;116007;116008;116009;116010;116011	116007			7	
ETTVGAVTVTHK	1	Unmodified	1241.6616	0.66156582	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.78		9					2	2		3	4	4	2	22.57	18.893	2;3	7.4835E-11	16370	160511_QHF_FH_JSI10i_2	147.74	135.22			0.98017	0.97976	27.862	12	2	Median	1.1031	0.93479	6.7756	3	0	Median	0.8704	1.0345	22.77	4	0	Median	1.3774	1.3755	56.423	3	2	Median	0.92542	1.0079	6.7719	2	0	Median	409000000	202940000	206060000	79022000	46260000	32761000	96887000	54936000	41952000	117150000	42044000	75104000	115940000	59696000	56242000	14228	5666	13496	85904;85905;85906;85907;85908;85909;85910;85911;85912;85913;85914;85915;85916	116012;116013;116014;116015;116016;116017;116018;116019;116020;116021;116022;116023;116024;116025;116026;116027;116028;116029	116029			18	
ETTVVWDK	1	Unmodified	976.48656	0.48656157	1391	Q14409;P32189	GK3P;GK	Putative glycerol kinase 3;Glycerol kinase	yes	no	0	0	0	0		By MS/MS			1	0	1										1			32.856	32.516	2	0.040761	29043	160511_QHF_FH_JSI10i_1	47.869	29.833			1.3187	1.5593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3187	1.5593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112640000	40098000	72543000	0	0	0	112640000	40098000	72543000	0	0	0	0	0	0	14229	1391	13497	85917	116030	116030			1	
ETTYYDVLGVKPNATQEELK	2	Unmodified	2297.1427	0.14270766	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	67.618	66.877	3	4.9168E-14	58812	160511_QHF_FH_JSI9i_2	143.71	129.02			0.86696	0.90085	14.731	8	0	Median	1.139	0.95682	0.62825	2	0	Median	0.74547	0.8944	0.9415	2	0	Median	0.83463	0.81398	14.413	2	0	Median	0.98158	1.0553	24.298	2	0	Median	976780000	507610000	469170000	186010000	87555000	98459000	257250000	155210000	102030000	251030000	128810000	122220000	282490000	136030000	146460000	14230	1376	13498	85918;85919;85920;85921;85922;85923;85924;85925	116031;116032;116033;116034;116035;116036;116037;116038;116039;116040;116041;116042;116043;116044;116045;116046	116042			16	
ETTYYDVLGVKPNATQEELKK	3	Unmodified	2425.2377	0.23767067	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							2	3	6	5	60.084	59.524	3;4	5.122E-22	52606	160511_QHF_FH_JSI11i_3	151.23	128.85			0.92029	0.96175	27.442	16	4	Median	0.86103	0.71992	17.538	2	0	Median	0.78193	0.96297	38.903	3	0	Median	1.0091	0.99828	25.677	6	2	Median	0.909	1.0402	21.108	5	2	Median	3572600000	1798500000	1774000000	288980000	133430000	155550000	574220000	255780000	318430000	1166300000	625150000	541170000	1543000000	784190000	758850000	14231	1376	13499	85926;85927;85928;85929;85930;85931;85932;85933;85934;85935;85936;85937;85938;85939;85940;85941	116047;116048;116049;116050;116051;116052;116053;116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066;116067;116068	116049			22	
ETVAVKPTENNEEEFTSK	2	Unmodified	2050.9695	0.96949432	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.762	35.154	3	9.7169E-06	31899	160511_QHF_FH_JSI12i_1	63.639	58.637			0.89125	0.79698	37.462	4	0	Median	1.0103	0.81898	NaN	1	0	Median	0.6445	0.76919	NaN	1	0	Median	0.78625	0.77558	NaN	1	0	Median	1.6011	1.6626	NaN	1	0	Median	269930000	156000000	113930000	50488000	25774000	24714000	77076000	50369000	26707000	94114000	53414000	40700000	48254000	26443000	21811000	14232	454	13500	85942;85943;85944;85945	116069;116070	116070			2	
ETVAYLQAHALTTEGIFR	0	Unmodified	2019.0425	0.042540102	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.651	78.021	3	0.0064303	68600	160511_QHF_FH_JSI11i_2	44.641	34.026			1.2996	1.296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2996	1.296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31637000	13592000	18045000	0	0	0	0	0	0	31637000	13592000	18045000	0	0	0	14233	2261	13501	85946	116071	116071			1	
ETVDQVEELRR	0	Unmodified	1372.6947	0.69465686	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	2	2	3	32.211	31.407	2;3	2.1432E-05	26588	160511_QHF_FH_JSI11i_2	102.52	64.22			0.99863	1.1019	12.105	8	2	Median	1.3247	1.1554	NaN	1	0	Median	0.91768	1.1325	16.829	2	1	Median	1.0081	1.0445	23.643	2	1	Median	0.96713	1.0617	6.1274	3	0	Plateau	1244900000	587380000	657540000	36969000	15078000	21891000	388670000	191350000	197320000	471960000	199620000	272340000	347320000	181330000	165990000	14234	2517	13502	85947;85948;85949;85950;85951;85952;85953;85954	116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082;116083	116078			12	
ETVDSFLDLAR	0	Unmodified	1264.6299	0.62993134	1552	P43007	SLC1A4	Neutral amino acid transporter A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.835	77.633	2	0.027255	67054	160511_QHF_FH_JSI12i_2	56.563	37.292			0.7778	0.86206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7778	0.86206	NaN	1	1	Median	11864000	5968400	5895600	0	0	0	0	0	0	0	0	0	11864000	5968400	5895600	14235	1552	13503	85955	116084	116084			1	
ETVEEQASTTER	0	Unmodified	1378.6212	0.62121715	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	1	3	2	15.783	12.465	2	3.5592E-05	10615	160511_QHF_FH_JSI11i_1	104.79	83.925			1.0485	1.0302	10.969	7	0	Median	1.1872	0.98254	NaN	1	0	Median	0.79995	0.94661	NaN	1	0	Median	1.0485	1.0302	10.981	3	0	Plateau	0.99353	1.0587	6.7516	2	0	Median	760170000	375780000	384390000	195640000	91232000	104400000	173460000	92744000	80720000	198170000	95166000	103010000	192900000	96642000	96258000	14236	2457	13504	85956;85957;85958;85959;85960;85961;85962	116085;116086;116087;116088;116089;116090	116085			4	
ETVEEQVSTTER	0	Unmodified	1406.6525	0.65251728	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	24.746	22.585	2	1.2742E-64	19715	160511_QHF_FH_JSI10i_1	226.29	155.37			0.9624	0.98625	11.787	5	0	Median	1.2004	0.97012	NaN	1	0	Median	0.8261	0.98625	NaN	1	0	Median	0.91955	0.91134	21.444	2	0	Median	0.9624	1.0173	NaN	1	0	Median	1072000000	563090000	508860000	232330000	108720000	123620000	295820000	168510000	127310000	218290000	113640000	104650000	325510000	172230000	153280000	14237	2456	13505	85963;85964;85965;85966;85967;85968	116091;116092;116093;116094;116095;116096;116097;116098;116099	116097			9	
ETVFTKSPYQEFTDHLVK	2	Acetyl (K)	2210.0895	0.089549874	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.736	73.421	3	0.00023098	40437	160513_QHF_FH_JSI11Kac_6	120.9	99.699			0.062831	0.05916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.062831	0.05916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166350000	160150000	6195400	0	0	0	0	0	0	166350000	160150000	6195400	0	0	0	14238	1084	13506	85969	116100	116100	929;930		1	
ETVGFGMLK	1	Unmodified	980.5001	0.50010314	5527	Q9Y2Q5	LAMTOR2	Ragulator complex protein LAMTOR2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	58.48	57.7	2	1.2698E-05	49496	160511_QHF_FH_JSI12i_2	110.31	90.673			1.0854	1.2153	23.49	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99847	1.001	29.204	2	2	Median	1.0854	1.2153	NaN	1	0	Median	260920000	109190000	151730000	0	0	0	0	0	0	190720000	84203000	106520000	70200000	24984000	45216000	14239	5527	13507	85970;85971;85972	116101;116102;116103	116101			3	
ETVLSALSR	0	Unmodified	974.53966	0.53965977	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		47.588	47.588	2	0.013583	42127	160511_QHF_FH_JSI11i_3	46.335	17.025			1.2701	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2701	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101910000	48184000	53729000	0	0	0	0	0	0	101910000	48184000	53729000	0	0	0	14240	3766	13508	85973	116104	116104			1	
ETVNALISDQK	1	Unmodified	1216.6299	0.62993134	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.241	40.839	2	1.1846E-05	36603	160511_QHF_FH_JSI10i_1	108.7	79.97			0.29523	0.34494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29523	0.34494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83783000	64578000	19205000	0	0	0	83783000	64578000	19205000	0	0	0	0	0	0	14241	3239	13509	85974;85975;85976	116105;116106;116107	116106			3	
ETVNATFPVAIVMLR	0	Unmodified	1659.9018	0.90181287	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.928	85.208	2	0.0009505	48542	160513_QHF_FH_JSI10Kac_6	103.88	69.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18885000	0	18885000	0	0	0	18885000	0	18885000	0	0	0	0	0	0	14242	5555	13510	85977	116108	116108			1	
ETVNVITLYK	1	Unmodified	1178.6547	0.65468953	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.22	4	1				2	3			2	4	3	1	66.328	61.487	2	4.4899E-06	55159	160511_QHF_FH_JSI10i_1	109.66	88.762			1.1869	1.2412	30.286	9	3	Median	1.3366	1.1129	15.426	2	1	Median	1.1539	1.3536	36.167	4	0	Median	1.0523	1.0161	36.991	3	2	Plateau	NaN	NaN	NaN	0	0	Median	268140000	131060000	137080000	56125000	24371000	31754000	75891000	37204000	38686000	136130000	69484000	66642000	0	0	0	14243	4319	13511	85978;85979;85980;85981;85982;85983;85984;85985;85986;85987	116109;116110;116111;116112;116113;116114;116115;116116;116117	116112			8	
ETVPTLAPK	1	Unmodified	954.5386	0.53859714	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.65	4		1			3				2	2	2	2	38.022	33.82	2	2.7136E-05	30298	160511_QHF_FH_JSI12i_1	103.74	67.859			0.99374	1.031	10.769	7	1	Median	1.0958	0.90735	NaN	1	0	Median	0.89142	1.0509	11.975	2	1	Median	1.153	1.1149	16.227	2	0	Median	0.99207	1.0476	2.2597	2	0	Median	2074700000	1081000000	993690000	518700000	260380000	258320000	497430000	266600000	230840000	522350000	281940000	240420000	536180000	272060000	264110000	14244	3793	13512	85988;85989;85990;85991;85992;85993;85994;85995	116118;116119;116120;116121;116122;116123;116124;116125;116126;116127;116128;116129;116130	116121			13	
ETVQHSDVLFLAVK	1	Unmodified	1584.8512	0.8511575	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.37		4						1	1	1	1	3	1	68.234	64.482	2;3	1.7537E-05	55735	160511_QHF_FH_JSI12i_2	115.68	102.56			0.91929	0.93997	20.377	5	1	Median	1.3446	1.1186	NaN	1	1	Median	0.60894	0.74481	NaN	1	0	Median	1.0848	1.0853	20.327	2	0	Median	0.81739	0.88013	NaN	1	0	Median	181070000	105680000	75391000	5696900	1926700	3770100	38664000	23235000	15429000	79770000	51237000	28533000	56942000	29284000	27658000	14245	1394	13513	85996;85997;85998;85999;86000;86001	116131;116132;116133;116134;116135;116136;116137;116138;116139;116140;116141	116132			11	
ETVQTTEDQILK	1	Unmodified	1403.7144	0.71438925	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	1	2	5	46.239	41.894	2	5.9663E-16	37773	160511_QHF_FH_JSI12i_1	189.58	131.99			0.81079	0.77569	45.686	7	3	Median	0.85196	0.69361	NaN	1	0	Median	0.82984	0.98526	NaN	1	0	Median	0.84459	0.81597	7.1596	2	1	Median	0.37325	0.39493	52.782	3	2	Median	1734100000	1037000000	697040000	306230000	180390000	125840000	457710000	290970000	166740000	470700000	274410000	196290000	499440000	291270000	208170000	14246	1139	13514	86002;86003;86004;86005;86006;86007;86008;86009;86010	116142;116143;116144;116145;116146;116147;116148;116149;116150;116151;116152;116153	116145			12	
ETVQTTEDQILKR	1	Unmodified	1559.8155	0.81550028	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	4	10	2							4	3	4	5	38.034	37.237	2;3	3.4024E-07	31790	160511_QHF_FH_JSI11i_2	99.283	64.896			1.0087	0.81467	23.586	13	4	Linear	1.4239	1.2103	3.8363	3	1	Plateau	0.68657	0.82077	27.386	3	1	Plateau	0.8405	0.83826	45.772	3	1	Plateau	1.0162	1.0849	6.3968	4	1	Median	1179500000	539270000	640210000	165630000	64163000	101470000	307650000	168070000	139590000	382050000	165880000	216170000	324150000	141160000	182990000	14247	1139	13515	86011;86012;86013;86014;86015;86016;86017;86018;86019;86020;86021;86022;86023;86024;86025;86026	116154;116155;116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168;116169;116170;116171	116167			18	
ETVSEAPPLLFSDEEEK	1	Unmodified	1918.9048	0.9047688	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS				1	0	1									1				73.952	73.035	2	1.0126E-05	64972	160511_QHF_FH_JSI9i_1	105.65	81.361			0.93451	0.75165	NaN	1	1	Median	0.93451	0.75165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19572000	9602500	9969700	19572000	9602500	9969700	0	0	0	0	0	0	0	0	0	14248	3011	13516	86027	116172	116172			1	
ETVSEESNVLCLSK	1	Unmodified	1593.7556	0.75560214	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	4.86	8	4	6		3	4				4	9	5	7	55.957	52.968	2;3	2.7865E-135	47962	160511_QHF_FH_JSI12i_1	331.01	307.69			0.94421	0.99589	37.95	24	8	Median	1.2099	0.99589	12.353	4	2	Median	0.90166	1.0859	46.722	9	5	Median	0.76958	0.74412	14.164	5	0	Median	1.0224	1.024	35.701	6	1	Median	6780700000	3430700000	3350000000	956670000	461070000	495600000	1779000000	862980000	916060000	2256800000	1287100000	969720000	1788300000	819630000	968620000	14249	1033	13517	86028;86029;86030;86031;86032;86033;86034;86035;86036;86037;86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049;86050;86051;86052	116173;116174;116175;116176;116177;116178;116179;116180;116181;116182;116183;116184;116185;116186;116187;116188;116189;116190;116191;116192;116193;116194;116195;116196;116197;116198;116199;116200;116201;116202;116203;116204;116205;116206;116207;116208;116209;116210;116211;116212	116185			40	
ETVSQRPGATVPTDFATFPSSAFLR	0	Unmodified	2681.3449	0.34492971	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		89.679	89.071	3	3.6054E-11	78322	160511_QHF_FH_JSI9i_2	93.949	80.494			0.88862	1.0073	23.605	6	1	Median	1.2884	1.0797	16.213	2	0	Median	0.88862	1.0886	4.6008	2	0	Median	0.72488	0.70588	6.7739	2	1	Median	NaN	NaN	NaN	0	0	Median	479580000	243860000	235720000	189420000	89058000	100360000	198540000	102870000	95673000	91618000	51931000	39687000	0	0	0	14250	2516	13518	86053;86054;86055;86056;86057;86058	116213;116214;116215;116216;116217;116218;116219;116220;116221;116222;116223	116218			11	
ETVTILPGASFFSSDESFAMIR	0	Unmodified	2404.1621	0.16206289	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	101.91	101.79	2	1.9924E-70	89570	160511_QHF_FH_JSI11i_2	226.65	212.29			1.1836	1.2221	8.4709	3	1	Plateau	1.2339	1.0319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1836	1.2223	NaN	1	0	Median	1.0148	1.1289	NaN	1	0	Median	900510000	411730000	488780000	229110000	89206000	139910000	0	0	0	420000000	187740000	232260000	251400000	134780000	116620000	14251	1865	13519	86059;86060;86061	116224;116225	116225			2	
ETVTPGPNFQER	0	Unmodified	1373.6575	0.65754307	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.269	33.666	2	2.3952E-06	30167	160511_QHF_FH_JSI11i_1	125.48	83.604			1.1332	1.1534	10.021	4	0	Median	1.5464	1.2543	NaN	1	0	Median	0.89899	1.0607	NaN	1	0	Median	1.0706	1.0499	NaN	1	0	Median	1.1996	1.2559	NaN	1	0	Median	344200000	156620000	187580000	82570000	30028000	52542000	93749000	47932000	45817000	91098000	42003000	49094000	76784000	36659000	40125000	14252	4886	13520	86062;86063;86064;86065	116226;116227;116228;116229;116230;116231;116232;116233	116227			8	
ETVTQLQNIIEANSQHYQK	1	Unmodified	2243.1182	0.11822424	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	72.391	71.6	3	2.2471E-18	62037	160511_QHF_FH_JSI12i_3	156.13	140.88			0.77355	0.8287	56.254	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77355	0.8287	56.254	2	0	Median	69321000	45853000	23469000	0	0	0	0	0	0	0	0	0	69321000	45853000	23469000	14253	3423	13521	86066;86067	116234;116235;116236	116235			3	
ETVVEVPQVTWEDIGGLEDVK	1	Unmodified	2341.1689	0.16892241	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	101.25	101.12	2	2.4587E-58	91695	160511_QHF_FH_JSI12i_1	259.08	238.12			0.64633	0.65762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64633	0.65762	NaN	1	1	Median	82794000	59742000	23052000	0	0	0	0	0	0	0	0	0	82794000	59742000	23052000	14254	1846	13522	86068	116237	116237			1	
ETVVEVPQVTWEDIGGLEDVKR	1	Unmodified	2497.27	0.27003344	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.79	0.773	6	5	3							4	2	3	5	96.79	96.514	3;4	6.6315E-58	85469	160511_QHF_FH_JSI10i_2	213.13	206.92			1.0065	1.0305	8.1538	14	2	Median	1.2729	1.0545	8.8365	4	1	Median	0.77934	0.93072	0.19616	2	0	Median	0.9941	0.99252	4.8852	3	0	Median	0.95406	1.0395	9.0794	5	1	Median	2374100000	1218300000	1155800000	319710000	132390000	187320000	639610000	378040000	261570000	696560000	344460000	352100000	718230000	363430000	354800000	14255	1846	13523	86069;86070;86071;86072;86073;86074;86075;86076;86077;86078;86079;86080;86081;86082	116238;116239;116240;116241;116242;116243;116244;116245;116246;116247;116248;116249;116250;116251;116252;116253;116254;116255;116256;116257;116258;116259;116260;116261;116262;116263;116264;116265;116266;116267;116268;116269;116270;116271;116272;116273;116274;116275;116276;116277	116274			40	
ETVYCLNDDDETEVLK	1	Unmodified	1941.8514	0.85135302	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.241	61.605	2	7.3675E-52	55755	160511_QHF_FH_JSI10i_1	217.09	200.06			0.93567	1.1311	17.242	4	0	Linear	1.3612	1.1304	NaN	1	0	Median	1.0355	1.211	NaN	1	0	Median	0.8395	0.82464	NaN	1	0	Median	1.1053	1.1318	NaN	1	0	Median	312700000	158140000	154560000	44468000	17198000	27270000	92065000	49113000	42953000	94922000	55536000	39386000	81248000	36293000	44955000	14256	1024	13524	86083;86084;86085;86086	116278;116279;116280;116281;116282;116283;116284;116285	116283			8	
ETWLSENQR	0	Unmodified	1161.5415	0.54145068	2162;234;995	Q01082;O15020;P11277	SPTBN1;SPTBN2;SPTB	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	29.262	28.888	2	0.00047682	24373	160511_QHF_FH_JSI11i_2	88.948	41.099			1.1022	1.1051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1022	1.1051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59858000	33516000	26342000	0	0	0	0	0	0	59858000	33516000	26342000	0	0	0	14257	2162;234;995	13525	86087;86088	116286;116287	116287			2	
ETWYLSWALDTNQEERDK	1	Unmodified	2283.0444	0.044390595	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	1		By MS/MS			16	0									1		1			82.495	76.902	3	0.00059452	42593	160513_QHF_FH_JSI10Kac_6	93.684	68.79			0.90543	1.0669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90543	1.0669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35480000	18282000	17197000	0	0	0	35480000	18282000	17197000	0	0	0	0	0	0	14258	1069;3467	13526	86089	116288	116288			1	
ETYEALLAR	0	Unmodified	1064.5502	0.55022446	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	48.926	48.15	2	2.0167E-05	41120	160511_QHF_FH_JSI12i_2	106.91	67.265			1.0007	1.0321	8.0193	7	0	Median	1.2062	1.0399	NaN	1	0	Median	0.81378	0.97998	7.3228	2	0	Median	1.0496	1.0248	1.7113	2	0	Median	0.91194	0.95673	16.035	2	0	Median	726920000	385140000	341780000	79605000	37571000	42034000	204040000	117450000	86588000	264630000	136800000	127830000	178650000	93322000	85327000	14259	679	13527	86090;86091;86092;86093;86094;86095;86096	116289;116290;116291;116292;116293;116294;116295;116296;116297;116298;116299;116300;116301;116302	116292			14	
ETYEVLLSFIQAALGDQPR	0	Unmodified	2149.1055	0.10553429	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	100.96	92.849	2;3	5.9482E-177	56107	160513_QHF_FH_JSI10Kac_6	358.91	323.95			0.9474	0.92993	65.98	6	1	Median	0.9474	0.8171	15.83	2	0	Median	0.7068	0.83399	17.86	2	0	Median	NaN	NaN	NaN	0	0	Median	2.6678	2.857	25.325	2	1	Median	1204700000	674170000	530490000	277740000	152040000	125710000	804570000	481420000	323150000	0	0	0	122350000	40718000	81636000	14260	552	13528	86097;86098;86099;86100;86101;86102;86103	116303;116304;116305;116306;116307;116308;116309;116310;116311	116311			9	
ETYGSGTQYHMQLAK	1	Unmodified	1712.7828	0.78281994	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	35.833	35.029	2;3	3.2705E-05	29813	160511_QHF_FH_JSI11i_2	88.78	76.634			1.1819	1.2358	14.679	5	0	Median	1.3216	1.1307	NaN	1	0	Median	1.035	1.2808	NaN	1	0	Median	1.0993	1.1011	16.319	2	0	Median	1.2782	1.4549	NaN	1	0	Median	249390000	114980000	134410000	38984000	15599000	23385000	47786000	20999000	26787000	115760000	53766000	61996000	46860000	24615000	22245000	14261	3342	13529	86104;86105;86106;86107;86108;86109	116312;116313;116314;116315;116316;116317;116318;116319	116315			8	
ETYLAILMDR	0	Oxidation (M)	1239.6169	0.61692381	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			77.862	67.432	2	0.034237	33601	160513_QHF_FH_JSI10Kac_5	55.567	42.514			0.70612	0.80092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70612	0.80092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2023800	1259800	764010	0	0	0	2023800	1259800	764010	0	0	0	0	0	0	14262	4122	13530	86110	116320	116320			1	
ETYMEFLWQYK	1	Unmodified	1536.6959	0.69590241	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	89.406	79.964	2	0.053825	42961	160513_QHF_FH_JSI12Kac_6	52.79	39.198			0.62558	0.67753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62558	0.67753	NaN	1	0	Median	8775800	5376200	3399600	0	0	0	0	0	0	0	0	0	8775800	5376200	3399600	14263	4557	13531	86111	116321	116321			0	
ETYPNYLPLYVAR	0	Unmodified	1597.814	0.81404372	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								3	1	1	1	79.744	78.963	2	7.218E-07	70202	160511_QHF_FH_JSI9i_1	91.087	57.858			0.94287	0.86448	8.3322	5	4	Median	0.96123	0.82788	6.1186	2	2	Median	0.71601	0.88614	NaN	1	1	Median	0.99275	0.99787	NaN	1	0	Median	0.77896	0.85574	NaN	1	1	Median	191010000	102410000	88596000	62227000	30720000	31507000	28397000	18297000	10100000	63351000	31782000	31569000	37031000	21611000	15419000	14264	1316	13532	86112;86113;86114;86115;86116;86117	116322;116323;116324;116325;116326;116327	116323			6	
ETYTEDFIK	1	Unmodified	1144.5288	0.52882031	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.355	48.676	2	0.00088814	44171	160511_QHF_FH_JSI12i_1	72.23	63.317			0.90761	0.91701	11.315	4	2	Median	1.2387	1.0026	NaN	1	1	Median	0.6725	0.7972	NaN	1	1	Median	0.87602	0.85009	NaN	1	0	Median	0.94033	0.9892	NaN	1	0	Median	238890000	108420000	130470000	51463000	19985000	31478000	62880000	31044000	31836000	75690000	31205000	44485000	48859000	26185000	22674000	14265	2115	13533	86118;86119;86120;86121	116328;116329;116330;116331;116332	116330			5	
ETYVEQEQGENANDRNDR	0	Unmodified	2165.921	0.920981	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	14.401	14.135	3	3.6139E-06	11474	160511_QHF_FH_JSI11i_1	100.41	90.995			0.62835	0.76012	13.707	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.62835	0.76012	NaN	1	0	Median	0.98554	0.95719	NaN	1	1	Median	0.70597	0.75014	NaN	1	0	Median	153960000	86417000	67547000	0	0	0	65302000	44172000	21130000	45737000	21248000	24489000	42925000	20997000	21928000	14266	5523	13534	86122;86123;86124	116333;116334;116335	116333			3	
ETYVHIMHNQK	1	Unmodified	1398.6714	0.671419	4517	Q9BXI9	C1QTNF6	Complement C1q tumor necrosis factor-related protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.239	19.253	3	0.0016659	15577	160511_QHF_FH_JSI12i_3	60.598	54.878			0.9609	0.97237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9609	0.97237	NaN	1	1	Median	29091000	13861000	15230000	0	0	0	0	0	0	0	0	0	29091000	13861000	15230000	14267	4517	13535	86125	116336	116336			1	
EVAAFAQFGSDLDAATQQLLSR	0	Unmodified	2337.1601	0.16008906	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.662	2	7	4							3	4	3	3	102.05	101.97	2;3	2.0685E-71	89727	160511_QHF_FH_JSI11i_2	233.89	224.71			0.90569	0.91786	14.654	13	1	Median	1.2293	1.0476	6.542	3	1	Plateau	0.67865	0.82085	6.6815	4	0	Median	0.90569	0.91553	27.007	3	0	Median	0.81279	0.88571	4.3455	3	0	Plateau	7912800000	3979200000	3933700000	2284200000	977690000	1306500000	1913700000	1101100000	812570000	2094900000	1102100000	992790000	1620100000	798240000	821850000	14268	1263	13536	86126;86127;86128;86129;86130;86131;86132;86133;86134;86135;86136;86137;86138	116337;116338;116339;116340;116341;116342;116343;116344;116345	116343			8	
EVAALCR	0	Unmodified	817.41162	0.41162248	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	17.793	17.041	2	0.025458	13782	160511_QHF_FH_JSI12i_2	54.571	27.45			1.271	1.3991	5.4642	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.271	1.3991	5.4642	2	0	Median	225280000	102070000	123210000	0	0	0	0	0	0	0	0	0	225280000	102070000	123210000	14269	1023	13537	86139;86140	116346;116347;116348	116346			3	
EVAAQVK	1	Unmodified	743.41775	0.41775372	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.853	4	3	4							2	3	3	3	9.0259	8.668	2	0.0099713	6534	160511_QHF_FH_JSI12i_1	76.847	9.8117			1.0389	1.0295	22.993	11	2	Median	1.2524	1.0249	0.63194	2	1	Median	1.0389	1.2418	25.094	3	0	Plateau	0.92839	0.90386	30.546	3	1	Plateau	1.0581	1.1208	17.63	3	0	Plateau	13308000000	6014800000	7293500000	3267000000	1328500000	1938500000	3880300000	1833200000	2047100000	3188000000	1443900000	1744000000	2973000000	1409100000	1563900000	14270	4276	13538	86141;86142;86143;86144;86145;86146;86147;86148;86149;86150;86151	116349;116350;116351;116352;116353;116354;116355;116356;116357;116358;116359;116360	116353			12	
EVAATEEDVTR	0	Unmodified	1218.5728	0.57281039	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				20.119	18.961	2	0.041665	16009	160511_QHF_FH_JSI9i_1	50.791	38.744			1.505	1.2191	NaN	1	0	Median	1.505	1.2191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42434000	19974000	22460000	42434000	19974000	22460000	0	0	0	0	0	0	0	0	0	14271	3799	13539	86152	116361	116361			0	
EVAATEEDVTRLPSPTSPFSSLSQDQAATSK	1	Unmodified	3248.5685	0.56845988	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	77.787	77.298	3;4	1.8843E-58	70434	160511_QHF_FH_JSI12i_1	193.75	171.83			1.2207	1.0379	29.364	5	1	Median	1.2952	1.0379	NaN	1	0	Median	0.82462	0.97689	NaN	1	0	Median	1.2207	1.1713	NaN	1	0	Median	1.3903	1.4109	47.857	2	1	Median	248350000	119910000	128430000	41070000	20403000	20667000	62577000	32486000	30090000	47717000	21500000	26217000	96982000	45524000	51457000	14272	3799	13540	86153;86154;86155;86156;86157	116362;116363;116364;116365;116366;116367;116368;116369;116370;116371;116372	116366			11	
EVAAVLLHFK	1	Unmodified	1125.6546	0.65462995	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									3	1		2		73.782	64.683	2;3	0.00064476	35136	160513_QHF_FH_JSI11Kac_6	67.726	67.726			0.83539	0.77154	48.925	3	1	Plateau	1.3078	1.0845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2736	1.2498	68.213	2	1	Median	NaN	NaN	NaN	0	0	Median	55866000	25524000	30342000	16514000	6853700	9660000	0	0	0	39352000	18670000	20682000	0	0	0	14273	141	13541	86158;86159;86160	116373;116374	116373			2	
EVADEVTRPRPSGEEVLQDIQVMLK	1	Unmodified	2837.4593	0.45930754	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	2		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		95.908	95.816	4	3.0491E-09	85030	160511_QHF_FH_JSI11i_3	79.783	72.831			0.90839	0.96714	11.64	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7186	0.89072	NaN	1	0	Median	1.1483	1.0501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75607000	36511000	39096000	0	0	0	23960000	12889000	11071000	51647000	23622000	28025000	0	0	0	14274	1410	13542	86161;86162	116375;116376;116377;116378	116377			4	
EVADSYAQNAK	1	Unmodified	1194.5517	0.55168102	4737	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	14.684	14.238	2	2.397E-07	11679	160511_QHF_FH_JSI9i_1	121.64	92.557			0.95353	1.0099	23.925	6	2	Median	0.9673	0.80193	NaN	1	0	Median	0.87735	1.0419	NaN	1	0	Median	1.611	1.5688	NaN	1	0	Median	0.88731	0.91508	16.306	3	2	Plateau	312350000	160950000	151400000	33476000	18823000	14652000	63364000	32066000	31298000	52678000	15660000	37018000	162840000	94405000	68431000	14275	4737	13543	86163;86164;86165;86166;86167;86168	116379;116380;116381;116382;116383;116384;116385	116385			7	
EVAEAYEVLSDPK	1	Unmodified	1448.7035	0.70349021	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.079	56.424	2	5.4026E-06	51221	160511_QHF_FH_JSI12i_1	125.97	75.776			0.71617	0.74451	12.71	4	0	Median	0.88115	0.71974	NaN	1	0	Median	0.66185	0.77013	NaN	1	0	Median	0.62393	0.60349	NaN	1	0	Median	0.77494	0.80618	NaN	1	0	Median	573290000	324010000	249290000	103710000	43113000	60599000	154830000	91787000	63040000	147400000	90549000	56849000	167360000	98557000	68799000	14276	5269	13544	86169;86170;86171;86172	116386;116387;116388;116389;116390	116388			5	
EVAENQQNQSSDPEEEK	1	Unmodified	1959.8294	0.82937202	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	11.87	11.468	2;3	1.2905E-80	9125	160511_QHF_FH_JSI10i_1	240.59	226.33			1.0593	1.115	9.1533	4	0	Median	1.4758	1.185	NaN	1	0	Median	0.99333	1.1492	NaN	1	0	Median	1.1296	1.0818	NaN	1	0	Median	0.89789	0.96319	NaN	1	0	Median	167540000	83380000	84157000	39632000	14332000	25300000	38752000	16711000	22040000	36999000	18947000	18053000	52154000	33390000	18764000	14277	339	13545	86173;86174;86175;86176;86177	116391;116392;116393;116394;116395;116396;116397;116398;116399;116400	116397			10	
EVAFFNNFLTDAK	1	Unmodified	1514.7405	0.74054442	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	1	1		1								1	1		95.235	95.235	2	9.7014E-05	86194	160511_QHF_FH_JSI10i_1	73.781	55.47			1.7361	1.6273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7361	1.6273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27448000	8365200	19083000	0	0	0	0	0	0	27448000	8365200	19083000	0	0	0	14278	4521	13546	86178;86179	116401;116402	116402			2	
EVAGAKPHITAAEGK	2	Acetyl (K)	1519.7995	0.79945628	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.165	31.237	3	0.050028	18895	160513_QHF_FH_JSI11Kac_4	34.382	22.589			0.1265	0.12631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1265	0.12631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5208200	4743100	465100	0	0	0	0	0	0	5208200	4743100	465100	0	0	0	14279	2780	13547	86180	116403	116403			1	
EVAGLVTLK	1	Unmodified	928.55933	0.55933258	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1				1	2	2	51.464	50.435	2	0.0066058	43415	160511_QHF_FH_JSI11i_2	55.461	31.34			1.5111	1.6017	15.279	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5111	1.6017	15.279	2	2	Median	63304000	27034000	36270000	0	0	0	0	0	0	0	0	0	63304000	27034000	36270000	14280	5575	13548	86181;86182;86183;86184;86185	116404;116405;116406;116407;116408	116407			5	
EVAKHPK	2	Acetyl (K)	849.47085	0.47085192	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	14.7	0.452							2	5			3	3	1	6.5141	-2.7375	2;3	0.0052428	2254	160513_QHF_FH_JSI11Kac_5	100.19	39.4			0.31303	0.30559	87.961	7	0	Median	NaN	NaN	NaN	0	0	Median	1.05	1.2531	7.436	3	0	Median	0.24954	0.24572	23.921	3	0	Median	0.27532	0.29311	NaN	1	0	Median	60174000	43165000	17009000	0	0	0	10276000	4820400	5455300	46279000	35630000	10649000	3619500	2714700	904730	14281	878	13549	86186;86187;86188;86189;86190;86191;86192	116409;116410;116411;116412	116411	588		4	
EVALVKDVR	1	Acetyl (K)	1069.6132	0.61315906	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	56.684	46.059	2	0.041426	25521	160513_QHF_FH_JSI10Kac_4	53.751	28.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4048600	2664400	1384300	0	0	0	1384300	0	1384300	0	0	0	2664400	2664400	0	14282	1298	13550	86193;86194	116413;116414	116413			2	
EVANSTANLVK	1	Unmodified	1144.6088	0.60880197	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	3	1	29.02	25.728	2	1.577E-14	15294	160513_QHF_FH_JSI11Kac_3	150.35	103.27			0.94633	1.0155	40.15	6	1	Median	1.4367	1.1943	NaN	1	0	Median	0.69231	0.80871	44.18	2	0	Median	1.3966	1.3728	54.61	2	1	Median	0.86798	0.92539	NaN	1	0	Median	1341700000	680820000	660830000	358570000	131980000	226590000	377140000	229020000	148120000	259790000	134500000	125290000	346150000	185320000	160830000	14283	5616;5628	13551	86195;86196;86197;86198;86199;86200;86201	116415;116416;116417;116418;116419;116420;116421;116422;116423;116424;116425;116426	116419			12	
EVANSTANLVKTIK	2	Acetyl (K)	1528.8461	0.84607213	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				3	2	1	66.636	56.63	2	0.0017984	30225	160513_QHF_FH_JSI10Kac_4	97.214	63.348			0.88179	0.96255	86.04	5	0	Median	NaN	NaN	NaN	0	0	Median	1.6841	1.9695	13.067	2	0	Median	0.36712	0.35695	10.883	2	0	Median	0.88179	0.96255	NaN	1	0	Median	17040000	10305000	6734700	0	0	0	4896500	1970000	2926500	9036000	6519900	2516100	3107100	1815000	1292100	14284	5616;5628	13552	86202;86203;86204;86205;86206;86207	116427;116428;116429;116430;116431	116427	3499		4	
EVANVCNQSLMK	1	Unmodified	1391.6537	0.65372002	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.261	36.662	2	0.0012957	33231	160511_QHF_FH_JSI12i_1	66.056	42.736			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14285	2280	13553	86208	116432	116432			1	
EVAPDGPLQESSTR	0	Unmodified	1484.7107	0.71070086	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.902	31.3	2	0.0019049	28209	160511_QHF_FH_JSI12i_1	88.441	61.843			0.34396	0.36195	30.706	4	4	Median	0.47338	0.39017	NaN	1	1	Median	0.29484	0.33576	NaN	1	1	Median	0.21823	0.2092	NaN	1	1	Median	0.40126	0.41034	NaN	1	1	Median	95804000	66211000	29593000	22219000	14398000	7821000	21882000	14027000	7854600	20339000	16608000	3730500	31365000	21178000	10187000	14286	2938	13554	86209;86210;86211;86212	116433;116434;116435;116436	116434			4	
EVAQQAVDADVHAVGISTLAAGHK	1	Unmodified	2386.2241	0.2240863	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	61.397	60.858	3;4	2.4767E-11	52343	160511_QHF_FH_JSI12i_3	96.303	84.516			1.1209	1.1276	16.621	6	1	Median	NaN	NaN	NaN	0	0	Median	0.72202	0.89383	NaN	1	0	Median	1.1564	1.1102	16.054	2	0	Median	1.1924	1.2072	14.475	3	1	Median	560680000	267550000	293130000	0	0	0	79302000	49218000	30084000	191800000	80329000	111470000	289580000	138000000	151570000	14287	1200	13555	86213;86214;86215;86216;86217;86218	116437;116438;116439;116440;116441;116442;116443	116442			7	
EVAQSLLNAK	1	Unmodified	1071.5924	0.59242362	3604	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				38.747	37.701	2	0.0026371	32836	160511_QHF_FH_JSI9i_2	72.643	36.763			0.88882	0.75434	NaN	1	1	Median	0.88882	0.75434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23385000	11504000	11881000	23385000	11504000	11881000	0	0	0	0	0	0	0	0	0	14288	3604	13556	86219	116444	116444			1	
EVATAIR	0	Unmodified	758.42865	0.42865276	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.03	4	5	3			2	3	3		4	4	6	6	16.828	12.788	2	9.238E-06	11752	160511_QHF_FH_JSI12i_1	148.21	33.62			0.96814	1.0036	18.141	18	1	Median	1.4657	1.2068	14.401	4	0	Median	0.95042	1.134	16.141	3	0	Plateau	0.96814	0.95516	7.3769	6	0	Median	0.92719	1.0038	27.926	5	1	Median	12166000000	5832300000	6333400000	2559500000	1085700000	1473800000	3160900000	1533100000	1627800000	3766600000	1874300000	1892300000	2678500000	1339100000	1339400000	14289	1084	13557	86220;86221;86222;86223;86224;86225;86226;86227;86228;86229;86230;86231;86232;86233;86234;86235;86236;86237;86238;86239	116445;116446;116447;116448;116449;116450;116451;116452;116453;116454;116455;116456;116457;116458;116459;116460;116461;116462;116463;116464;116465;116466	116452			22	
EVATDVR	0	Unmodified	788.40283	0.40283194	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.17	6.18	3					2	1				1	3	2	11.31	7.5229	2	0.0094456	7445	160511_QHF_FH_JSI10i_1	79.116	26.433			0.7694	0.96262	15.786	6	0	Linear	NaN	NaN	NaN	0	0	Median	0.77276	0.91359	NaN	1	0	Median	0.87116	0.86197	12.122	3	0	Plateau	0.87463	0.92349	29.701	2	0	Median	1520500000	818650000	701890000	0	0	0	501970000	277290000	224670000	450190000	230740000	219450000	568390000	310620000	257770000	14290	543	13558	86240;86241;86242;86243;86244;86245	116467;116468;116469;116470;116471;116472	116470			6	
EVATNSELVQSGK	1	Unmodified	1360.6834	0.68342347	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				1	3	2	4	30.183	24.853	2	3.046E-41	21850	160511_QHF_FH_JSI10i_1	207.88	176.12		+	0.85099	0.84143	29.197	10	4	Median	0.82865	0.67453	NaN	1	0	Median	0.57672	1.0086	22.236	3	2	Plateau	0.86367	0.84143	1.8908	2	0	Median	0.78856	0.83993	45.083	4	2	Median	817390000	484020000	333370000	183090000	125420000	57667000	186990000	117660000	69331000	271830000	157610000	114220000	175480000	83330000	92153000	14291	65	13559	86246;86247;86248;86249;86250;86251;86252;86253;86254;86255	116473;116474;116475;116476;116477;116478;116479;116480;116481;116482;116483;116484;116485;116486;116487	116480			15	
EVAWVIFDEIHYMR	0	Oxidation (M)	1822.8712	0.87124102	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	1	0	By matching			By MS/MS	16	0									2	1			1	86.503	77.476	3	0.017844	41489	160513_QHF_FH_JSI12Kac_6	32.252	26.537			1.1746	1.1258	11.875	2	0	Median	1.4398	1.2245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9583	1.0352	NaN	1	0	Median	48739000	22510000	26230000	25965000	9824000	16141000	0	0	0	0	0	0	22774000	12686000	10088000	14292	1532	13560	86256;86257	116488	116488		1206	1	
EVAWVIFDEIHYMR	0	Unmodified	1806.8763	0.8763264	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	91.165	81.723	3	0.00028408	44038	160513_QHF_FH_JSI12Kac_6	71.98	60.701			1.0246	1.0908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0246	1.0908	NaN	1	0	Median	39920000	17642000	22279000	0	0	0	0	0	0	0	0	0	39920000	17642000	22279000	14293	1532	13560	86258	116489;116490	116490			2	
EVCDEVKAHLLADMAHISGLVAAK	2	Unmodified	2576.3091	0.30907825	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			81.844	80.525	3	0.001875	67539	160511_QHF_FH_JSI10i_3	43.523	35.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14294	1415	13561	86259	116491	116491			1	
EVCFACVDGK	1	Unmodified	1183.5002	0.5001795	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		41.331	40.987	2	0.0029807	36909	160511_QHF_FH_JSI11i_1	71.349	59.123			2.755	2.7067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.755	2.7067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	138060000	40610000	97453000	0	0	0	0	0	0	138060000	40610000	97453000	0	0	0	14295	2155	13562	86260	116492	116492			1	
EVCGFAPYER	0	Unmodified	1226.539	0.53900784	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	44.266	40.814	2	1.3477E-05	35175	160511_QHF_FH_JSI11i_2	101.9	95.793			0.93585	1.006	22.875	11	0	Median	0.93318	0.78737	13.148	2	0	Median	0.96183	1.1365	7.0092	3	0	Plateau	0.789	0.80725	9.1745	3	0	Median	1.1023	1.2228	11.418	3	0	Median	1406600000	737490000	669060000	156820000	78875000	77942000	314070000	182030000	132040000	541920000	301150000	240770000	393750000	175430000	218310000	14296	5604	13563	86261;86262;86263;86264;86265;86266;86267;86268;86269;86270;86271	116493;116494;116495;116496;116497;116498;116499;116500;116501;116502;116503;116504;116505;116506;116507;116508	116505			15	
EVCTKYIYNR	1	Acetyl (K)	1386.6602	0.66018561	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		50.941	40.277	2	0.0027063	23568	160513_QHF_FH_JSI11Kac_4	80.239	61.459			0.064912	0.065077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.064912	0.065077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3723100	3364100	359070	0	0	0	0	0	0	3723100	3364100	359070	0	0	0	14297	527	13564	86272	116509	116509	273		1	
EVDADGDLIAVSNLNDSDK	1	Unmodified	1988.9175	0.91745875	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.376	67.771	2	2.2431E-11	61749	160511_QHF_FH_JSI12i_1	113.25	100.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14298	417	13565	86273	116510	116510			1	
EVDAEYEAR	0	Unmodified	1080.4724	0.47236807	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.138	16.656	2	0.003125	14124	160511_QHF_FH_JSI10i_1	61.691	56.602			0.84243	0.90807	12.138	4	0	Median	1.1718	0.98178	NaN	1	0	Median	0.85247	1.0103	NaN	1	0	Median	0.83251	0.78557	NaN	1	0	Median	0.81377	0.8399	NaN	1	0	Median	267210000	141780000	125430000	78852000	42157000	36695000	58936000	30761000	28175000	64723000	33845000	30878000	64700000	35019000	29680000	14299	3555	13566	86274;86275;86276;86277	116511;116512;116513	116512			3	
EVDATSPAPSTSSTVK	1	Unmodified	1575.7628	0.76279601	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	1	3	3	29.581	25.052	2	3.4369E-15	21792	160511_QHF_FH_JSI9i_1	162.22	151.85			1.0499	1.1314	51.751	8	2	Median	1.0616	0.86914	NaN	1	0	Median	1.0337	1.1819	NaN	1	0	Median	1.0278	0.99589	70.064	3	1	Median	1.0383	1.0831	54.709	3	1	Plateau	453210000	252930000	200290000	105770000	54950000	50816000	117850000	69349000	48500000	101470000	60727000	40741000	128130000	67904000	60228000	14300	2752	13567	86278;86279;86280;86281;86282;86283;86284;86285	116514;116515;116516;116517;116518;116519;116520;116521;116522;116523;116524;116525	116523			12	
EVDDFFEQEK	1	Unmodified	1284.551	0.55101232	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	52.666	52.002	2	1.387E-08	47021	160511_QHF_FH_JSI11i_1	119.21	76.339			0.6574	0.68225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6574	0.68225	NaN	1	1	Median	118940000	62136000	56806000	0	0	0	0	0	0	0	0	0	118940000	62136000	56806000	14301	5687	13568	86286;86287;86288	116526;116527;116528	116526			3	
EVDDLGPEVGDIK	1	Unmodified	1384.6722	0.67219008	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.2	1					3					1	1	2	61.542	55.262	2	0.00051117	49872	160511_QHF_FH_JSI10i_1	89.9	84.995			0.85737	0.96647	49.506	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58033	0.68102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2667	1.3716	NaN	1	0	Median	254980000	139140000	115840000	0	0	0	252200000	138220000	113990000	0	0	0	2772400	921080	1851300	14302	300	13569	86289;86290;86291;86292	116529;116530;116531;116532	116530			4	
EVDDLTAELK	1	Unmodified	1131.5659	0.5659341	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.989	51.317	2	0.00087087	45502	160511_QHF_FH_JSI9i_1	69.276	43.17			0.95303	0.80667	36.887	4	1	Linear	0.8909	0.73746	NaN	1	0	Median	0.70537	0.83932	NaN	1	0	Median	1.7097	1.7062	NaN	1	1	Median	1.0195	1.039	NaN	1	0	Median	686120000	363370000	322760000	198210000	89789000	108420000	180890000	113170000	67724000	131230000	59790000	71439000	175790000	100620000	75176000	14303	4989	13570	86293;86294;86295;86296	116533;116534;116535;116536;116537;116538	116537			6	
EVDEDFDSK	1	Unmodified	1082.4404	0.44039923	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	24.59	21.553	2	1.3729E-08	18880	160511_QHF_FH_JSI10i_1	152.34	133.61			0.96224	1.0305	20.701	6	0	Median	1.5849	1.3139	NaN	1	0	Median	0.87094	1.0138	NaN	1	0	Median	0.9561	0.93555	15.97	2	0	Median	1.0677	1.14	31.566	2	0	Median	1569800000	812870000	756910000	363010000	173470000	189530000	375250000	228430000	146830000	410040000	208640000	201390000	421480000	202330000	219150000	14304	3998	13571	86297;86298;86299;86300;86301;86302	116539;116540;116541;116542;116543;116544;116545;116546;116547;116548;116549;116550	116545			12	
EVDEGAWETK	1	Unmodified	1162.5142	0.51423288	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	30.921	30.198	2	1.1246E-05	27183	160511_QHF_FH_JSI12i_1	105.2	91.818			0.34691	0.41605	26.601	3	3	Median	0.62512	0.50798	NaN	1	1	Median	0.34691	0.41605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28103	0.29993	NaN	1	1	Median	1755300000	1236400000	518900000	390240000	242690000	147550000	695140000	497560000	197570000	0	0	0	669920000	496140000	173780000	14305	3323	13572	86303;86304;86305;86306	116551;116552;116553;116554;116555	116552			5	
EVDEGAWETKISHR	1	Acetyl (K)	1697.8009	0.80091285	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		65.562	54.647	3	0.0070234	29739	160513_QHF_FH_JSI11Kac_5	54.09	45.269			0.56	0.54901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56	0.54901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10403000	7066000	3337500	0	0	0	0	0	0	10403000	7066000	3337500	0	0	0	14306	3323	13573	86307	116556	116556	2832		1	
EVDEGPSPPEQFTAVK	1	Unmodified	1728.8206	0.82064524	2530	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.862	52.107	2	1.5086E-27	46323	160511_QHF_FH_JSI9i_1	145.17	121.08			1.2882	1.3169	8.0919	3	2	Plateau	1.8651	1.5176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5658	1.5121	NaN	1	1	Median	1.2882	1.3168	NaN	1	0	Median	138250000	57372000	80877000	35362000	13284000	22078000	0	0	0	35299000	12119000	23180000	67588000	31969000	35619000	14307	2530	13574	86308;86309;86310;86311;86312	116557;116558;116559;116560;116561;116562;116563	116563			7	
EVDEISPEDDQR	0	Unmodified	1430.6161	0.61613177	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	25.47	24.931	2	9.7738E-05	22280	160511_QHF_FH_JSI12i_1	84.658	79.456			2.5258	2.5475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5258	2.5475	NaN	1	1	Median	24791000	6196400	18595000	0	0	0	0	0	0	0	0	0	24791000	6196400	18595000	14308	4254	13575	86313;86314	116564;116565	116565			2	
EVDEQMLAIQSK	1	Unmodified	1389.681	0.68098063	4440;2430	Q9BUF5;Q13509	TUBB6;TUBB3	Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				2	4	2	3	53.149	50.927	2;3	1.0216E-41	45362	160511_QHF_FH_JSI9i_1	204.17	169.64			0.99379	0.96909	18.11	11	2	Median	1.1738	0.96584	12.37	2	0	Median	1.0033	1.1957	24.037	4	2	Median	0.9484	0.92317	6.8646	2	0	Median	0.82674	0.87765	14.724	3	0	Median	4011900000	2005200000	2006700000	717870000	311890000	405980000	1474700000	772150000	702570000	887290000	445400000	441900000	932030000	475810000	456220000	14309	4440;2430	13576	86315;86316;86317;86318;86319;86320;86321;86322;86323;86324;86325	116566;116567;116568;116569;116570;116571;116572;116573;116574;116575;116576;116577;116578;116579;116580;116581;116582;116583	116580			18	
EVDEQMLAIQSK	1	Oxidation (M)	1405.6759	0.67589525	4440;2430	Q9BUF5;Q13509	TUBB6;TUBB3	Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	9.57	5.42	2					5					1	2	4	42.995	36.332	2	0.00028422	20543	160513_QHF_FH_JSI11Kac_3	87.184	70.513			0.8567	0.8618	23.446	7	4	Median	NaN	NaN	NaN	0	0	Median	0.80016	0.94933	NaN	1	0	Median	0.8835	0.84044	3.5499	2	1	Median	0.87905	0.93158	32.342	4	3	Median	77182000	46882000	30300000	0	0	0	2486400	1558100	928340	5238100	2652700	2585400	69458000	42672000	26786000	14310	4440;2430	13576	86326;86327;86328;86329;86330;86331;86332	116584;116585;116586;116587;116588;116589;116590	116586		1950	7	
EVDEQMLNVQNK	1	Unmodified	1445.682	0.68204326	2075;872;2477	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	5.71	12	7	4	1	5	7	4		1	11	12	8	10	45.96	41.397	2;3	5.0499E-220	37685	160511_QHF_FH_JSI9i_1	340.33	306.08			0.88639	0.94443	84.532	38	14	Median	1.2827	1.0503	147.35	11	6	Median	0.80211	0.95145	19.34	10	2	Median	0.93055	0.92487	69.381	8	4	Median	0.96604	1.0556	22.973	9	2	Median	55780000000	24304000000	31476000000	13375000000	7117200000	6257900000	13627000000	6014700000	7612500000	14428000000	6009700000	8418300000	14349000000	5162100000	9187100000	14311	872;2075;2477	13577	86333;86334;86335;86336;86337;86338;86339;86340;86341;86342;86343;86344;86345;86346;86347;86348;86349;86350;86351;86352;86353;86354;86355;86356;86357;86358;86359;86360;86361;86362;86363;86364;86365;86366;86367;86368;86369;86370;86371;86372;86373	116591;116592;116593;116594;116595;116596;116597;116598;116599;116600;116601;116602;116603;116604;116605;116606;116607;116608;116609;116610;116611;116612;116613;116614;116615;116616;116617;116618;116619;116620;116621;116622;116623;116624;116625;116626;116627;116628;116629;116630;116631;116632;116633;116634;116635;116636;116637;116638;116639;116640;116641;116642;116643;116644;116645;116646;116647;116648;116649;116650;116651;116652;116653;116654;116655;116656;116657;116658;116659;116660;116661;116662;116663	116637			73	
EVDEQMLNVQNK	1	Oxidation (M)	1461.677	0.67695789	2075;872;2477	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	5.5	17			2	15	12				8	12	11	15	34.658	28.64	2;3	1.9139E-170	37532	160511_QHF_FH_JSI9i_1	313.01	277.74			0.96877	1.0245	58.133	44	9	Median	1.233	1.0075	102.87	7	2	Median	0.88734	1.0545	58.114	12	2	Median	1.0017	0.98954	55.281	11	3	Median	0.99838	1.0892	29.387	14	2	Median	6439300000	2938800000	3500500000	2419500000	815010000	1604500000	1211900000	693250000	518610000	1170700000	587110000	583640000	1637200000	843430000	793730000	14312	872;2075;2477	13577	86374;86375;86376;86377;86378;86379;86380;86381;86382;86383;86384;86385;86386;86387;86388;86389;86390;86391;86392;86393;86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407;86408;86409;86410;86411;86412;86413;86414;86415;86416;86417;86418;86419	116664;116665;116666;116667;116668;116669;116670;116671;116672;116673;116674;116675;116676;116677;116678;116679;116680;116681;116682;116683;116684;116685;116686;116687;116688;116689;116690;116691;116692;116693;116694;116695;116696;116697;116698;116699;116700;116701;116702;116703;116704;116705;116706;116707;116708;116709;116710;116711;116712;116713;116714;116715;116716;116717;116718;116719;116720;116721;116722;116723;116724;116725;116726;116727;116728;116729;116730;116731	116702		415	67	
EVDETRK	1	Unmodified	875.43486	0.43486035	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	2.384	1.8276	2	0.025571	985	160511_QHF_FH_JSI12i_2	68.915	48.633			5.1366	5.4633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.1366	5.4633	NaN	1	1	Median	26247000	6646700	19600000	0	0	0	0	0	0	0	0	0	26247000	6646700	19600000	14313	5313	13578	86420	116732	116732			1	
EVDEVDAALSDLEITLEGGK	1	Unmodified	2102.0267	0.026674846	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	102.43	102.36	3	4.4458E-17	93155	160511_QHF_FH_JSI10i_1	172.37	148.08			1.1276	1.151	6.1352	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.94197	1.1064	8.0527	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1276	1.151	NaN	1	0	Median	247570000	116740000	130830000	0	0	0	181540000	87047000	94490000	0	0	0	66032000	29693000	36338000	14314	3965	13579	86421;86422;86423	116733;116734;116735;116736	116736			4	
EVDFKPFGTLLHTYSVLSPTGGENFTFQIYK	2	Unmodified	3534.7711	0.77112285	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	96.12	88.012	3;4;5	3.3494E-262	52083	160513_QHF_FH_JSI10Kac_6	328.52	315.87			0.85154	0.88605	8.9356	9	0	Median	1.0035	0.85798	7.2195	2	0	Median	0.77374	0.91951	6.5029	3	0	Median	0.82153	0.7769	6.6247	2	0	Median	0.84435	0.89027	5.3463	2	0	Median	5697100000	3023500000	2673600000	1335700000	688730000	646990000	2130600000	1158400000	972210000	862240000	479020000	383210000	1368500000	697330000	671210000	14315	220	13580	86424;86425;86426;86427;86428;86429;86430;86431;86432	116737;116738;116739;116740;116741;116742;116743;116744;116745;116746;116747;116748;116749;116750;116751	116748			15	
EVDGEGKPYYEVR	1	Acetyl (K)	1581.7311	0.73110195	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		53.568	44.029	2	0.0054728	23951	160513_QHF_FH_JSI11Kac_3	69.979	59.456			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	942600	942600	0	0	0	0	0	0	0	942600	942600	0	0	0	0	14316	5119	13581	86433	116752	116752	3314		1	
EVDGEGKPYYEVR	1	Unmodified	1539.7205	0.72053726	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		29.399	29.026	3	0.02067	24458	160511_QHF_FH_JSI11i_2	42.209	34.665			0.79135	0.78574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79135	0.78574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29172000	14693000	14480000	0	0	0	0	0	0	29172000	14693000	14480000	0	0	0	14317	5119	13581	86434	116753	116753			1	
EVDGLDVSK	1	Unmodified	960.47639	0.47639081	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				1	2	4	2	34.27	30.035	2	0.00085786	27168	160511_QHF_FH_JSI12i_1	84.213	56.688			0.93075	0.81676	63.105	9	7	Median	0.93075	0.75783	NaN	1	0	Median	0.99599	1.1572	49.274	2	1	Median	0.95728	0.94725	75.207	4	4	Median	0.82749	0.89623	105.32	2	2	Median	1469200000	757760000	711400000	282640000	112540000	170100000	346150000	190850000	155300000	558630000	272180000	286450000	281740000	182200000	99548000	14318	2517	13582	86435;86436;86437;86438;86439;86440;86441;86442;86443	116754;116755;116756;116757;116758;116759;116760;116761;116762;116763;116764	116756			11	
EVDGLLTSEPMGSPVSSK	1	Unmodified	1831.8873	0.88734459	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.105	66.512	2	1.42E-52	60578	160511_QHF_FH_JSI12i_1	214.23	197.6			1.0291	1.0157	6.8503	4	0	Median	1.2757	1.0557	NaN	1	0	Median	0.80347	0.93263	NaN	1	0	Median	1.1168	1.0815	NaN	1	0	Median	0.9482	0.9772	NaN	1	0	Median	295800000	148240000	147560000	76146000	40722000	35425000	71587000	31967000	39620000	76902000	39795000	37107000	71168000	35757000	35411000	14319	3801	13583	86444;86445;86446;86447	116765;116766;116767;116768;116769;116770;116771;116772;116773	116769			9	
EVDIGIPDATGR	0	Unmodified	1241.6252	0.62518031	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				1	4	3	2	62.432	56.458	2	6.4761E-12	29250	160513_QHF_FH_JSI12Kac_3	119.16	106.92			0.91948	0.91715	27.848	5	1	Median	1.2861	1.0502	NaN	1	0	Median	0.44256	0.5173	NaN	1	0	Median	0.93672	0.92485	1.1822	2	1	Median	0.84022	0.91166	NaN	1	0	Median	926100000	431770000	494330000	442550000	189090000	253450000	5773100	3926600	1846500	471070000	234320000	236760000	6709400	4433700	2275700	14320	1846	13584	86448;86449;86450;86451;86452;86453;86454;86455;86456;86457	116774;116775;116776;116777;116778;116779;116780;116781;116782;116783;116784;116785	116784			12	
EVDIGIPDATGRLEILQIHTK	1	Unmodified	2317.2642	0.2641602	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	3.36		5	9						1	2	5	5	3	89.679	88.955	2;3;4	1.5819E-18	80121	160511_QHF_FH_JSI11i_3	151.96	147.09			0.98924	0.98222	15.118	14	0	Median	1.3984	1.1978	21.922	2	0	Median	0.76493	0.88441	12.275	5	0	Median	1.0482	1.0115	11.114	4	0	Median	0.88762	0.90265	18.708	3	0	Median	1300500000	686220000	614330000	58942000	24832000	34110000	313600000	186940000	126660000	622760000	323440000	299310000	305250000	151000000	154240000	14321	1846	13585	86458;86459;86460;86461;86462;86463;86464;86465;86466;86467;86468;86469;86470;86471;86472	116786;116787;116788;116789;116790;116791;116792;116793;116794;116795;116796;116797;116798;116799;116800;116801;116802;116803;116804;116805;116806;116807;116808;116809;116810;116811;116812;116813;116814;116815;116816	116787			31	
EVDIYTVK	1	Unmodified	965.50696	0.50696266	4325	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	44.749	41.226	2	0.0021249	36941	160511_QHF_FH_JSI11i_1	82.452	46.267			0.8668	0.90852	34.697	6	2	Median	0.68016	0.56334	NaN	1	0	Median	0.71773	0.84788	NaN	1	0	Median	1.0945	1.0892	39.621	2	1	Median	1.0629	1.1443	22.863	2	1	Median	2943200000	1526700000	1416500000	507300000	291110000	216190000	797200000	395650000	401550000	831090000	444090000	387000000	807560000	395800000	411760000	14322	4325	13586	86473;86474;86475;86476;86477;86478;86479	116817;116818;116819;116820;116821;116822;116823;116824;116825;116826;116827	116817			11	
EVDLIPK	1	Unmodified	812.46437	0.46436956	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.854	45.178	2	0.020108	41073	160511_QHF_FH_JSI12i_1	57.281	17.178			1.1136	1.0678	6.164	4	0	Median	1.1878	1.0152	NaN	1	0	Median	0.87561	1.0242	NaN	1	0	Median	1.1825	1.1501	NaN	1	0	Median	1.0488	1.1132	NaN	1	0	Median	163040000	83260000	79776000	32300000	15738000	16562000	40540000	22314000	18225000	40739000	19208000	21530000	49458000	26000000	23459000	14323	3011	13587	86480;86481;86482;86483	116828;116829;116830;116831;116832;116833;116834;116835	116830			8	
EVDNFVDK	1	Unmodified	964.45018	0.45017606	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	2	2	28.665	27.046	2	0.0010939	23427	160511_QHF_FH_JSI9i_1	94.114	65.602			1.135	1.2113	49.58	7	5	Median	1.2348	1.0043	NaN	1	0	Median	1.4806	1.7574	42.051	2	2	Median	1.5679	1.5172	69.787	2	2	Median	0.81206	0.87731	45.623	2	1	Median	2327400000	1114700000	1212700000	388300000	203210000	185090000	909880000	462140000	447740000	671890000	281690000	390210000	357310000	167650000	189660000	14324	1620	13588	86484;86485;86486;86487;86488;86489;86490	116836;116837;116838;116839;116840;116841;116842;116843;116844	116842			9	
EVDPDGRR	0	Unmodified	942.45191	0.45190739	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	5.3296	5.0604	2	0.0033912	2877	160511_QHF_FH_JSI12i_2	73.324	46.362			1.3304	1.49	23.987	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3574	1.6646	NaN	1	0	Median	1.3039	1.3337	NaN	1	0	Median	1.4596	1.5217	38.419	2	0	Median	449490000	181960000	267530000	0	0	0	162520000	52743000	109780000	97529000	41816000	55714000	189440000	87402000	102040000	14325	133	13589	86491;86492;86493;86494	116845;116846	116845			2	
EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR	0	Unmodified	3333.546	0.5459503	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0		By MS/MS			1.5	0.5	1	1									2			92.426	92.196	3	1.4471E-28	81667	160511_QHF_FH_JSI10i_2	126.88	121.28			1.0169	1.2116	9.9136	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0169	1.2116	9.9136	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	228470000	120090000	108380000	0	0	0	228470000	120090000	108380000	0	0	0	0	0	0	14326	2006	13590	86495;86496	116847;116848;116849;116850;116851	116851			5	
EVDPQGLR	0	Unmodified	912.46649	0.46649483	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	21.101	20.632	2	0.0050968	17790	160511_QHF_FH_JSI11i_1	66.682	42.527			1.3223	1.368	10.507	5	2	Median	1.4702	1.173	NaN	1	0	Median	1.2119	1.4247	11.251	2	2	Median	1.4799	1.4633	NaN	1	0	Median	1.2921	1.368	NaN	1	0	Median	1128800000	527870000	600890000	247720000	94023000	153700000	402490000	199610000	202880000	228980000	109030000	119940000	249570000	125210000	124360000	14327	1711	13591	86497;86498;86499;86500;86501	116852;116853;116854;116855;116856	116852			5	
EVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLK	1	Unmodified	3525.6305	0.63046779	2427	Q13501	SQSTM1	Sequestosome-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.517	85.06	3	4.2424E-17	77470	160511_QHF_FH_JSI11i_1	84.58	82.834			0.86312	0.86987	14.703	4	0	Median	1.1179	0.91595	NaN	1	0	Median	0.91139	1.0926	NaN	1	0	Median	0.81742	0.7823	NaN	1	0	Median	0.80114	0.8261	NaN	1	0	Median	176850000	93449000	83396000	47541000	21822000	25719000	54330000	26864000	27466000	40163000	23943000	16221000	34810000	20820000	13990000	14328	2427	13592	86502;86503;86504;86505	116857;116858;116859;116860;116861;116862;116863;116864;116865;116866	116858			10	
EVDRNEGLK	1	Unmodified	1058.5356	0.53563702	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	1	2	4	8.873	8.5536	2;3	0.0044129	6220	160511_QHF_FH_JSI12i_2	40.386	12.373			0.77532	0.78563	20.206	9	0	Median	0.90272	0.76366	4.0112	2	0	Median	0.6476	0.79583	NaN	1	0	Median	0.934	0.94257	28.656	2	0	Median	0.69837	0.71731	23.819	4	0	Median	677700000	388460000	289240000	130270000	75596000	54671000	45913000	26546000	19367000	226710000	116330000	110380000	274810000	169990000	104820000	14329	4884	13593	86506;86507;86508;86509;86510;86511;86512;86513;86514	116867;116868;116869;116870	116867			4	
EVDRPGSK	1	Unmodified	886.45084	0.45084476	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.31	1	8	5					4		3	4	6	5	5.3708	2.9365	2;3	0.0014576	2894	160511_QHF_FH_JSI11i_3	66.621	50.081			0.98176	1.007	23.092	17	3	Median	1.2691	1.055	40.298	3	0	Median	0.98421	1.1585	7.0871	4	1	Median	1.0236	1.007	28.428	5	2	Median	0.84776	0.89057	3.4325	5	0	Median	20491000000	9773800000	10718000000	1919800000	820840000	1099000000	6048900000	2807700000	3241100000	7921600000	3547200000	4374400000	4601200000	2598000000	2003100000	14330	1484	13594	86515;86516;86517;86518;86519;86520;86521;86522;86523;86524;86525;86526;86527;86528;86529;86530;86531;86532	116871;116872;116873;116874;116875;116876;116877;116878;116879;116880;116881;116882;116883;116884;116885;116886;116887;116888;116889;116890;116891	116872			21	
EVDSKPVSQKPPPPSEK	3	Unmodified	1847.9629	0.9628928	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	1	3	3	14.754	14.603	3;4	5.1181E-05	11812	160511_QHF_FH_JSI11i_3	74.786	64.998			0.94075	0.96202	21.539	8	4	Median	1.1508	0.99773	NaN	1	0	Median	0.9334	1.1505	NaN	1	0	Median	1.2407	1.1636	13.938	3	2	Plateau	0.77524	0.77924	20.971	3	2	Median	704810000	328660000	376140000	58289000	24175000	34115000	59070000	29102000	29968000	433920000	192670000	241250000	153530000	82719000	70811000	14331	732	13595	86533;86534;86535;86536;86537;86538;86539;86540	116892;116893;116894;116895;116896;116897;116898;116899	116892			8	
EVDTSEK	1	Unmodified	806.36578	0.36577773	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.375	5.1517	2	0.025722	3009	160511_QHF_FH_JSI11i_1	57.177	34.158			0.67197	0.68205	6.7883	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73458	0.71559	NaN	1	1	Median	0.6147	0.65008	NaN	1	1	Median	555260000	285260000	270000000	0	0	0	0	0	0	261510000	131180000	130320000	293750000	154070000	139680000	14332	2195	13596	86541;86542	116900;116901	116900			2	
EVDVGLAADVGTLQR	0	Unmodified	1541.8049	0.80493559	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	69.314	68.794	2;3	1.2687E-09	62371	160511_QHF_FH_JSI10i_1	143.42	119.32			0.77375	0.90664	18.058	6	0	Median	1.2597	1.0213	NaN	1	0	Median	0.76268	0.90664	1.7585	2	0	Median	0.68713	0.64358	NaN	1	0	Median	0.8925	0.92151	19.15	2	0	Median	373280000	190680000	182600000	50465000	21555000	28910000	183370000	106480000	76893000	24290000	13110000	11181000	115160000	49542000	65617000	14333	2340	13597	86543;86544;86545;86546;86547;86548;86549	116902;116903;116904;116905;116906;116907;116908	116907			5	
EVDVNLPK	1	Unmodified	912.49165	0.49164694	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	44.349	40.826	2	0.00021395	35909	160511_QHF_FH_JSI9i_1	119.41	69.817			1.0058	1.0737	14.524	6	0	Median	1.4338	1.1505	NaN	1	0	Median	0.69839	0.81436	NaN	1	0	Median	1.055	1.0257	17.258	2	0	Median	0.99734	1.0737	7.1951	2	0	Median	1322900000	723660000	599280000	256190000	129710000	126490000	365110000	221760000	143340000	395950000	219180000	176770000	305690000	153010000	152680000	14334	2286	13598	86550;86551;86552;86553;86554;86555	116909;116910;116911;116912;116913;116914;116915;116916;116917;116918	116915			10	
EVDYEEMK	1	Unmodified	1041.4325	0.43247709	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.971	26.621	2	0.0054523	23828	160511_QHF_FH_JSI12i_1	73.665	62.596			0.77243	0.79563	59.143	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4919	1.7211	NaN	1	1	Median	2.6018	2.5437	NaN	1	1	Median	0.77243	0.79563	NaN	1	1	Median	302740000	137740000	165010000	0	0	0	84968000	32637000	52331000	83288000	31744000	51544000	134490000	73357000	61130000	14335	2493	13599	86556;86557;86558	116919;116920;116921	116920			3	
EVDYSDSLTEK	1	Unmodified	1284.5721	0.57214169	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	37.552	34.94	2	8.1557E-06	31612	160511_QHF_FH_JSI12i_1	112.36	88.202			1.2502	1.2424	20.57	4	3	Median	NaN	NaN	NaN	0	0	Median	1.3574	1.6041	NaN	1	1	Median	1.0959	1.0676	3.6064	2	1	Median	1.3575	1.4093	NaN	1	1	Median	393680000	172910000	220770000	0	0	0	123350000	55592000	67761000	134570000	62839000	71730000	135760000	54481000	81275000	14336	1737	13600	86559;86560;86561;86562;86563	116922;116923;116924;116925;116926	116923			5	
EVDYSGLR	0	Unmodified	937.45051	0.45051041	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	2	1	31.762	28.19	2	0.00016356	25248	160511_QHF_FH_JSI11i_1	123.69	65.522			0.86097	0.9552	9.8527	6	0	Median	1.1922	0.97717	NaN	1	0	Median	0.85493	1.0143	6.2303	2	0	Median	0.89236	0.87085	10.811	2	0	Median	0.79753	0.85622	NaN	1	0	Median	1499600000	792270000	707370000	312950000	126630000	186310000	416770000	238270000	178500000	391080000	213640000	177440000	378840000	213730000	165120000	14337	5383	13601	86564;86565;86566;86567;86568;86569	116927;116928;116929;116930;116931;116932;116933;116934;116935	116928			9	
EVEAAQGVK	1	Unmodified	929.48181	0.48181054	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	1	2	12.448	9.2929	2	0.00027695	7968	160511_QHF_FH_JSI9i_1	95.815	63.86			0.93872	1.0029	21.052	5	5	Median	0.93671	0.77475	NaN	1	1	Median	1.0538	1.2541	NaN	1	1	Median	0.88567	0.87484	NaN	1	1	Median	1.0448	1.1115	14.542	2	2	Median	1353600000	673730000	679830000	490220000	258290000	231930000	421550000	204910000	216650000	15021000	8737600	6283000	426770000	201800000	224970000	14338	454	13602	86570;86571;86572;86573;86574	116936;116937;116938;116939;116940	116939			5	
EVEAGPGDQQGDSYLR	0	Unmodified	1719.77	0.77000665	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	36.448	35.911	2	0.00011104	31668	160511_QHF_FH_JSI9i_1	94.191	78.054			0.67163	0.73138	30.378	4	2	Median	NaN	NaN	NaN	0	0	Median	0.66184	0.76927	NaN	1	0	Median	0.76556	0.74221	52.108	2	2	Median	0.68157	0.69537	NaN	1	0	Median	140740000	85560000	55183000	12206000	12206000	0	38287000	26554000	11733000	58200000	29250000	28949000	32051000	17549000	14501000	14339	325	13603	86575;86576;86577;86578;86579;86580	116941;116942;116943;116944;116945	116945			5	
EVEAQLPEK	1	Unmodified	1041.5342	0.53424004	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	30.304	28.035	2	2.0851E-05	25191	160511_QHF_FH_JSI12i_1	106.6	62.791			0.94735	1.023	18.745	5	0	Median	1.2666	1.0659	NaN	1	0	Median	0.84673	1.023	NaN	1	0	Median	1.0427	1.0046	11.082	2	0	Median	0.66427	0.68878	NaN	1	0	Median	316990000	169600000	147390000	64278000	30113000	34165000	79799000	41046000	38753000	93121000	51897000	41225000	79795000	46550000	33245000	14340	1737	13604	86581;86582;86583;86584;86585	116946;116947;116948;116949;116950;116951;116952	116948			6	
EVEDGLMLQDLVSAK	1	Unmodified	1645.8233	0.82328777	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		87.157	86.797	2	0.0010589	79071	160511_QHF_FH_JSI11i_1	78.744	49.445			0.55892	0.54239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55892	0.54239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18179000	13577000	4602700	0	0	0	0	0	0	18179000	13577000	4602700	0	0	0	14341	410	13605	86586	116953	116953			1	
EVEEDEYK	1	Unmodified	1039.4346	0.43458558	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	5.61	4	3			3	5				3	5	4	3	15.705	11.123	2	1.0788E-14	10300	160511_QHF_FH_JSI9i_1	170.66	151.93			1.0684	1.0584	28.649	14	1	Median	1.4657	1.2273	45.664	3	0	Plateau	0.8461	1.0256	34.618	4	1	Median	1.1654	1.12	15.485	4	0	Median	0.99612	1.0621	6.8759	3	0	Median	12202000000	6041300000	6160700000	2704000000	1410000000	1294100000	3015200000	1690100000	1325100000	3055300000	1400100000	1655200000	3427500000	1541100000	1886400000	14342	1057	13606	86587;86588;86589;86590;86591;86592;86593;86594;86595;86596;86597;86598;86599;86600;86601	116954;116955;116956;116957;116958;116959;116960;116961;116962;116963;116964;116965;116966;116967;116968;116969;116970;116971;116972;116973;116974;116975;116976;116977	116968			24	
EVEEDSEDEEMSEDEEDDSSGEEVVIPQKK	2	Unmodified	3440.3944	0.394439	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			50.075	49.655	3	3.5586E-05	44736	160511_QHF_FH_JSI10i_1	45.957	44.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14343	1154	13607	86602	116978	116978			1	
EVEEEPGIHSLK	1	Unmodified	1365.6776	0.67760981	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.45	4	7					1			1	3	4	4	31.161	29.751	2;3	4.0925E-05	25045	160511_QHF_FH_JSI12i_2	171.85	123.06			0.81673	0.96899	47.605	12	7	Median	1.4022	1.1758	NaN	1	1	Median	0.67124	0.7672	31.544	3	2	Median	0.78426	0.78691	64.884	4	3	Median	0.9661	1.0626	39.079	4	1	Median	2284100000	1125200000	1158900000	232590000	74231000	158360000	545050000	304220000	240820000	971120000	493340000	477780000	535310000	253400000	281900000	14344	5633	13608	86603;86604;86605;86606;86607;86608;86609;86610;86611;86612;86613;86614	116979;116980;116981;116982;116983;116984;116985;116986;116987;116988;116989;116990	116980			11	
EVEEEPGIHSLKHNK	2	Acetyl (K)	1786.885	0.88497683	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.129	29.616	3	0.0063387	16323	160513_QHF_FH_JSI11Kac_6	55.885	37.057			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7019900	7019900	0	0	0	0	0	0	0	7019900	7019900	0	0	0	0	14345	5633	13609	86615	116991	116991	3507		1	
EVEEISLLQPQVEESVLNLGK	1	Unmodified	2352.2424	0.2424217	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	101.55	101.42	3	1.7567E-12	92016	160511_QHF_FH_JSI12i_1	106.75	101.17			0.58458	0.61137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58458	0.61137	NaN	1	0	Median	124480000	75870000	48611000	0	0	0	0	0	0	0	0	0	124480000	75870000	48611000	14346	153	13610	86616	116992	116992			0	
EVEELILTESK	1	Unmodified	1288.6762	0.67621283	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.33	5					3	2	1		1	3	2	5	62.776	57.762	2	6.7718E-13	52477	160511_QHF_FH_JSI11i_1	143.89	118.33			0.93052	1.022	66.253	9	3	Median	0.93052	0.77816	NaN	1	0	Median	0.69674	0.81123	107.6	3	1	Plateau	0.90477	0.89018	22.841	2	0	Median	1.3576	1.4408	45.808	3	2	Median	1051200000	539920000	511270000	147000000	69523000	77478000	310840000	179970000	130870000	209150000	98968000	110180000	384200000	191460000	192750000	14347	4575	13611	86617;86618;86619;86620;86621;86622;86623;86624;86625;86626;86627	116993;116994;116995;116996;116997;116998;116999;117000;117001;117002;117003;117004	116993			12	
EVEELILTESKK	2	Unmodified	1416.7712	0.77117585	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	50.534	49.604	2;3	2.3092E-05	43346	160511_QHF_FH_JSI9i_2	126.67	101.9			1.7135	1.7009	113.05	9	9	Median	2.465	2.088	152.29	2	2	Median	1.1273	1.3913	120.93	2	2	Median	1.7135	1.7009	119.53	3	3	Median	1.3703	1.4952	180.9	2	2	Median	429330000	200390000	228940000	53902000	20977000	32925000	120960000	68430000	52527000	190740000	79479000	111260000	63730000	31503000	32227000	14348	4575	13612	86628;86629;86630;86631;86632;86633;86634;86635;86636	117005;117006;117007;117008;117009;117010;117011;117012;117013	117007			9	
EVEERPAPTPWGSK	1	Unmodified	1581.7787	0.77872084	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	2	4	3	34.155	33.651	2;3	4.5649E-05	29176	160511_QHF_FH_JSI11i_3	98.676	89.356			0.82373	0.8581	36.117	9	1	Median	0.867	0.73333	28.299	2	0	Median	0.74805	0.93049	11.453	2	0	Median	0.85814	0.8209	31.237	4	1	Median	1.9525	1.9426	NaN	1	0	Median	1250500000	639390000	611060000	245020000	127510000	117500000	343930000	187090000	156840000	526920000	268700000	258220000	134580000	56089000	78493000	14349	255	13613	86637;86638;86639;86640;86641;86642;86643;86644;86645;86646;86647	117014;117015;117016;117017;117018;117019;117020;117021;117022;117023;117024;117025;117026;117027;117028	117014			15	
EVEETATAK	1	Unmodified	976.47131	0.47130543	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	8.2943	7.8675	2	1.8708E-05	5705	160511_QHF_FH_JSI10i_1	107.57	63.127			1.2689	1.3067	15.563	3	0	Median	1.5749	1.3067	NaN	1	0	Median	0.85276	1.0195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2689	1.3581	NaN	1	0	Median	891530000	446180000	445350000	325450000	138080000	187360000	295060000	167550000	127510000	0	0	0	271020000	140540000	130480000	14350	4337	13614	86648;86649;86650;86651	117029;117030;117031;117032	117030			4	
EVEGDDVPESIMLEMK	1	Unmodified	1819.822	0.82196714	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	84.35	83.952	2	1.597E-21	76529	160511_QHF_FH_JSI12i_1	170.95	149.7			1.1103	1.1276	7.2104	5	3	Median	1.3555	1.1276	NaN	1	1	Median	1.023	1.1939	11.763	2	2	Median	1.2576	1.2265	NaN	1	0	Median	1.0528	1.1123	NaN	1	0	Median	215960000	98856000	117110000	22574000	8062600	14511000	89816000	50585000	39231000	53359000	16949000	36410000	50216000	23260000	26956000	14351	2785	13615	86652;86653;86654;86655;86656;86657	117033;117034;117035;117036;117037;117038;117039;117040;117041;117042	117036			10	
EVEHFLK	1	Unmodified	900.47052	0.47051757	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.57		8	1					1	4	5	2	2	5	27.879	23.974	2;3	0.0029888	20200	160511_QHF_FH_JSI12i_2	107.43	35.196			0.82204	0.73723	107.31	14	10	Median	1.6284	1.3815	72.149	5	4	Median	0.71467	0.87619	139.42	2	2	Median	1.1677	1.1628	64.308	2	1	Median	0.52522	0.57681	161.32	5	3	Median	3941000000	2091600000	1849400000	865740000	442050000	423690000	1071800000	652410000	419380000	965160000	501320000	463840000	1038300000	495840000	542490000	14352	289	13616	86658;86659;86660;86661;86662;86663;86664;86665;86666;86667;86668;86669;86670;86671	117043;117044;117045;117046;117047;117048;117049;117050;117051;117052;117053;117054;117055;117056;117057	117044			15	
EVEHFLKAEPEK	2	Acetyl (K)	1496.7511	0.75110911	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1		1	3	1	51.549	41.157	2	3.5253E-07	22268	160513_QHF_FH_JSI11Kac_6	134.2	109.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25504000	20228000	5275700	0	0	0	1342900	0	1342900	23195000	19262000	3932800	966320	966320	0	14353	289	13617	86672;86673;86674;86675;86676	117058;117059;117060;117061;117062	117058	156		5	
EVEIAYSDVAK	1	Unmodified	1222.6081	0.60813326	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.8	5.88	3					2				2	2	1		50.998	46.666	2	4.8618E-06	41383	160511_QHF_FH_JSI9i_1	111.06	79.123			1.2191	1.3681	38.596	5	4	Median	1.2115	0.99374	69.036	2	1	Median	1.1316	1.3282	10.346	2	2	Median	1.4008	1.3681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	325680000	123950000	201730000	173570000	67386000	106180000	10195000	4666000	5528900	141920000	51899000	90018000	0	0	0	14354	5711	13618	86677;86678;86679;86680;86681	117063;117064;117065;117066;117067	117064			5	
EVEISHLK	1	Unmodified	953.5182	0.51819605	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.222	22.877	3	0.013807	18996	160511_QHF_FH_JSI11i_2	38.086	21.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14355	2691	13619	86682	117068	117068			1	
EVELNELEPEK	1	Unmodified	1327.6507	0.65072636	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	5.57	5		1		5	4		1		2	4	5	5	58.671	52.549	2	5.2091E-88	47340	160511_QHF_FH_JSI11i_1	262.61	217.52			1.0053	1.0497	35.746	15	3	Median	0.74296	0.60934	76.922	2	1	Median	0.93391	1.0983	12.085	4	1	Median	1.0125	0.98607	24.902	5	1	Median	1.0552	1.1353	30.935	4	0	Median	10720000000	4443100000	6277300000	2535800000	1016100000	1519700000	2933300000	1196700000	1736600000	2347100000	917050000	1430000000	2904200000	1313300000	1590900000	14356	895	13620	86683;86684;86685;86686;86687;86688;86689;86690;86691;86692;86693;86694;86695;86696;86697;86698	117069;117070;117071;117072;117073;117074;117075;117076;117077;117078;117079;117080;117081;117082;117083;117084;117085;117086;117087;117088;117089;117090;117091;117092;117093;117094;117095;117096;117097;117098;117099;117100;117101;117102;117103;117104;117105;117106;117107;117108;117109;117110	117072			42	
EVELPLTNFR	0	Unmodified	1216.6452	0.64518747	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.012	74.379	2	0.012299	65301	160511_QHF_FH_JSI11i_2	45.368	7.0647			1.9511	1.9271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9511	1.9271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46885000	17404000	29481000	0	0	0	0	0	0	46885000	17404000	29481000	0	0	0	14357	5409	13621	86699	117111	117111			1	
EVEMDAVGK	1	Unmodified	976.45355	0.45354688	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	25.98	25.52	2	2.4067E-05	21832	160511_QHF_FH_JSI9i_1	105.14	57.287			2.3684	2.1205	96.024	6	3	Median	2.3848	1.9748	NaN	1	0	Median	1.1163	1.3303	134.07	2	2	Median	4.5969	4.4907	96.047	2	1	Median	1.1269	1.1988	NaN	1	0	Median	3811700000	1581700000	2230100000	497750000	180190000	317560000	1442300000	753180000	689150000	941310000	210980000	730330000	930340000	437320000	493020000	14358	1372	13622	86700;86701;86702;86703;86704;86705	117112;117113;117114;117115;117116;117117;117118;117119	117118			8	
EVEMDAVGK	1	Oxidation (M)	992.44846	0.4484615	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	7.71	5.82	3				1	3						4	3	17.278	11.45	2	5.932E-05	22626	160511_QHF_FH_JSI12i_1	101.54	51.415			0.74656	0.73505	86.324	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74656	0.73505	101.95	3	3	Median	1.1902	1.2589	76.99	2	2	Median	241980000	165020000	76957000	0	0	0	0	0	0	223790000	156950000	66836000	18192000	8071200	10121000	14359	1372	13622	86706;86707;86708;86709;86710;86711;86712	117120;117121;117122;117123;117124;117125;117126	117122		1008	7	
EVEMDAVGKDGR	1	Acetyl (K);Oxidation (M)	1362.6085	0.60854397	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		26.657	18.995	2	0.0025416	11691	160513_QHF_FH_JSI11Kac_3	73.499	62.335			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1076800	1076800	0	0	0	0	0	0	0	1076800	1076800	0	0	0	0	14360	1372	13623	86713	117127	117127	1310	1008	1	
EVEMGPFK	1	Unmodified	935.44225	0.44225391	3343	Q86VP6;O75155	CAND1;CAND2	Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	44.686	43.866	2	0.0012793	39514	160511_QHF_FH_JSI11i_1	91.626	91.626			0.81288	0.85545	22.048	8	1	Median	1.2072	1.0293	44.681	2	1	Median	0.72213	0.86002	17.788	2	0	Median	0.9634	0.95445	24.313	2	0	Median	0.7949	0.85545	4.8317	2	0	Median	1410700000	742340000	668360000	250930000	118140000	132790000	351940000	213250000	138680000	495150000	254020000	241130000	312680000	156930000	155760000	14361	3343	13624	86714;86715;86716;86717;86718;86719;86720;86721	117128;117129;117130;117131;117132;117133;117134;117135;117136;117137;117138;117139	117129			12	
EVENLILENTQLLETK	1	Unmodified	1885.0044	0.004423261	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	92.352	92.109	3	1.1744E-05	81814	160511_QHF_FH_JSI9i_1	82.59	67.661			0.96031	1.0691	83.66	5	5	Median	NaN	NaN	NaN	0	0	Median	0.72239	0.81413	38.535	2	2	Median	1.115	1.092	115.83	2	2	Median	3.2312	3.2471	NaN	1	1	Median	103820000	39952000	63870000	0	0	0	40463000	16883000	23580000	45991000	20181000	25810000	17367000	2887400	14480000	14362	404	13625	86722;86723;86724;86725;86726;86727	117140;117141;117142;117143;117144;117145	117145			6	
EVENSEDPK	1	Unmodified	1045.4564	0.45638365	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	5.2	5				1	1				1	1	4	1	6.8006	4.5075	2	6.2368E-08	4224	160511_QHF_FH_JSI12i_1	141.48	105.6			1.1276	1.0559	20.795	7	3	Median	1.4623	1.2166	NaN	1	0	Median	0.90325	1.0472	NaN	1	1	Median	1.2169	1.1496	28.398	4	2	Median	0.98887	1.0559	NaN	1	0	Median	1053600000	514670000	538950000	213670000	94945000	118720000	151100000	71568000	79536000	430250000	226310000	203940000	258600000	121850000	136750000	14363	1139	13626	86728;86729;86730;86731;86732;86733;86734	117146;117147;117148;117149;117150;117151;117152;117153	117149			8	
EVENSEDPKFR	1	Acetyl (K)	1390.6365	0.63647328	1139	P18206	VCL	Vinculin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		36.497	27.561	2	0.032987	16144	160513_QHF_FH_JSI11Kac_3	52.79	26.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1176500	1176500	0	0	0	0	0	0	0	1176500	1176500	0	0	0	0	14364	1139	13627	86735	117154	117154	995		1	
EVEPALELLEPIDQK	1	Unmodified	1721.9087	0.90873196	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	93.852	93.503	2;3	1.6017E-14	84971	160511_QHF_FH_JSI12i_1	156.36	138.55			0.92251	0.94873	20.738	8	1	Median	1.3195	1.0844	39.8	2	1	Median	0.92251	1.0975	0.40839	2	0	Median	0.90421	0.86565	9.105	2	0	Median	0.81091	0.86669	16.645	2	0	Median	290450000	145700000	144740000	37973000	15489000	22483000	88527000	47706000	40821000	87446000	43012000	44434000	76501000	39496000	37006000	14365	1368	13628	86736;86737;86738;86739;86740;86741;86742;86743	117155;117156;117157;117158;117159;117160;117161;117162;117163;117164;117165;117166;117167;117168;117169;117170;117171;117172;117173;117174;117175	117163			21	
EVEPAPVGGEHPSAAAPGPGK	1	Unmodified	1952.9592	0.9592044	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.214	30.612	3	1.6622E-08	27270	160511_QHF_FH_JSI10i_1	97.49	68.533			1.0461	1.1624	11.06	4	0	Linear	1.032	0.86189	NaN	1	0	Median	0.84659	0.98533	NaN	1	0	Median	1.0859	1.0725	NaN	1	0	Median	1.0603	1.1023	NaN	1	0	Median	450730000	225250000	225490000	96462000	44400000	52063000	105030000	63145000	41888000	113250000	54472000	58775000	135990000	63230000	72762000	14366	3477	13629	86744;86745;86746;86747	117176;117177;117178;117179;117180;117181;117182;117183	117181			8	
EVEPEPTEDK	1	Unmodified	1171.5245	0.52446322	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	5.28	4			2	3					1	2	3	3	17.124	12.84	2	6.9086E-13	11481	160511_QHF_FH_JSI12i_1	131.5	110.98			0.8407	0.85741	33.2	7	4	Median	0.8407	0.68067	NaN	1	1	Median	0.87234	1.0272	37.243	2	1	Median	0.73199	0.71244	41.596	3	2	Plateau	0.80498	0.85741	NaN	1	0	Median	2894900000	1589800000	1305100000	894560000	447390000	447170000	1113400000	636270000	477180000	866270000	496190000	370080000	20648000	9997300	10650000	14367	1169	13630	86748;86749;86750;86751;86752;86753;86754;86755;86756	117184;117185;117186;117187;117188;117189;117190;117191;117192;117193	117187			10	
EVEQFTQVAK	1	Unmodified	1177.5979	0.59790293	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.037	35.429	2	1.3021E-07	31171	160511_QHF_FH_JSI9i_1	120.76	90.578			0.83535	0.89043	13.483	4	0	Median	1.1698	0.97889	NaN	1	0	Median	0.79557	0.93761	NaN	1	0	Median	0.87711	0.84562	NaN	1	0	Median	0.67537	0.72286	NaN	1	0	Median	1811100000	921180000	889900000	343400000	137560000	205840000	532330000	310830000	221500000	565410000	256790000	308620000	369940000	216000000	153940000	14368	750	13631	86757;86758;86759;86760	117194;117195;117196;117197;117198;117199;117200	117200			6	
EVEQLIK	1	Unmodified	857.48583	0.48583328	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	1	2	33.304	30.857	2	0.0073727	27731	160511_QHF_FH_JSI12i_1	89.142	39.784			2.2599	2.5503	179.75	4	4	Median	NaN	NaN	NaN	0	0	Median	2.9072	3.4936	NaN	1	1	Median	43.328	42.001	NaN	1	1	Median	0.98855	1.0553	80.285	2	2	Median	1785100000	742760000	1042300000	0	0	0	688120000	315850000	372260000	274390000	4744500	269650000	822550000	422160000	400390000	14369	1267	13632	86761;86762;86763;86764	117201;117202;117203;117204	117202			4	
EVEQLIKK	2	Acetyl (K)	1027.5914	0.59136099	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.2	0.4						4	1				2	3		47.175	37.644	2	0.0011213	21836	160513_QHF_FH_JSI11Kac_4	94.302	43.696			0.99831	0.9945	66.935	3	3	Median	NaN	NaN	NaN	0	0	Median	2.3642	2.8165	NaN	1	1	Median	0.91259	0.89609	14.735	2	2	Median	NaN	NaN	NaN	0	0	Median	40873000	27741000	13132000	0	0	0	12136000	5817700	6318600	28736000	21923000	6812900	0	0	0	14370	1267	13633	86765;86766;86767;86768;86769	117205;117206;117207;117208;117209	117207	1168		5	
EVESLEK	1	Unmodified	832.41781	0.4178133	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.944	13.976	2	0.030864	11284	160511_QHF_FH_JSI9i_1	53.754	3.6277			0.58295	0.48444	NaN	1	1	Median	0.58295	0.48444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150710000	71625000	79086000	150710000	71625000	79086000	0	0	0	0	0	0	0	0	0	14371	3438	13634	86770	117210	117210			1	
EVESMGAHLNAYSTR	0	Unmodified	1663.7624	0.76241885	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	6.53		8	4					3	5	4	4	7	5	40.035	35.777	2;3	3.1006E-52	30571	160511_QHF_FH_JSI12i_2	216.84	182.31			1.1222	1.0077	11.098	20	3	Median	1.1884	0.99792	5.8213	4	1	Median	0.7964	0.96788	3.7513	4	0	Median	1.134	1.1438	11.289	7	2	Median	1.1687	1.2062	11.921	5	0	Median	3093900000	1525000000	1568900000	408720000	184710000	224010000	583760000	348380000	235380000	1101000000	524440000	576520000	1000500000	467480000	532980000	14372	1379	13635	86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782;86783;86784;86785;86786;86787;86788;86789;86790	117211;117212;117213;117214;117215;117216;117217;117218;117219;117220;117221;117222;117223;117224;117225;117226;117227;117228;117229;117230;117231;117232;117233;117234;117235;117236;117237;117238;117239;117240;117241;117242;117243;117244	117217			34	
EVESMGAHLNAYSTR	0	Oxidation (M)	1679.7573	0.75733347	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	27.3	27.294	3	0.00060457	19884	160511_QHF_FH_JSI10i_2	57.973	44.256			1.6094	1.5188	36.643	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.22	2.0577	42.949	2	2	Median	1.3586	1.4426	NaN	1	0	Median	106930000	42348000	64584000	0	0	0	0	0	0	58531000	17716000	40815000	48401000	24632000	23769000	14373	1379	13635	86791;86792;86793;86794	117245;117246;117247;117248;117249	117247		1016	5	
EVESPYEVHDYIR	0	Unmodified	1634.7577	0.75765105	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	50.359	49.377	3	0.00029458	42713	160511_QHF_FH_JSI11i_2	57.434	51.295			1.065	1.1408	10.689	4	0	Median	1.6017	1.4011	NaN	1	0	Median	0.92198	1.1201	NaN	1	0	Median	1.0933	1.1237	NaN	1	0	Median	1.0375	1.1581	NaN	1	0	Median	262780000	123670000	139110000	33469000	12935000	20533000	62627000	30642000	31985000	93898000	46049000	47849000	72788000	34043000	38745000	14374	3172	13636	86795;86796;86797;86798	117250;117251	117251			2	
EVESVDLPHCHLIK	1	Unmodified	1674.8399	0.83994089	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	48.782	47.869	4	0.00022123	40514	160511_QHF_FH_JSI12i_3	52.265	43.445			1.082	1.1455	31.213	4	0	Median	0.95138	0.83486	NaN	1	0	Median	0.76513	0.93524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3754	1.4964	9.1089	2	0	Median	273020000	109640000	163380000	28175000	14433000	13743000	76536000	44805000	31731000	0	0	0	168300000	50398000	117910000	14375	2639	13637	86799;86800;86801;86802	117252;117253	117253			1	
EVETLYQCQGNK	1	Unmodified	1467.6664	0.6663932	4437	Q9BUB5	MKNK1	MAP kinase-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	43.137	42.382	2	0.0051426	37503	160511_QHF_FH_JSI9i_1	53.756	30.381			1.5356	1.7228	78.201	3	0	Plateau	5.536	4.5658	NaN	1	0	Median	0.84143	1.0009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.8026	2.9654	NaN	1	0	Median	550290000	194090000	356200000	121120000	22223000	98896000	219120000	96866000	122250000	0	0	0	210050000	75002000	135050000	14376	4437	13638	86803;86804;86805	117254	117254			1	
EVEVEVESMDK	1	Unmodified	1292.5806	0.58059789	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	42.865	42.157	2	5.059E-07	38052	160511_QHF_FH_JSI12i_1	115.23	73.784			0.89298	0.8999	62.682	6	5	Median	0.92642	0.7622	107.76	2	2	Median	0.81874	0.98206	79.591	2	2	Median	0.7266	0.71678	NaN	1	1	Median	1.0974	1.1298	NaN	1	0	Median	1167800000	638420000	529430000	217940000	134030000	83916000	582640000	341520000	241120000	176320000	90022000	86297000	190950000	72852000	118100000	14377	3213	13639	86806;86807;86808;86809;86810;86811	117255;117256;117257;117258;117259;117260	117256			6	
EVEVEVESMDK	1	Oxidation (M)	1308.5755	0.57551251	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.432	27.716	2	0.014511	24073	160511_QHF_FH_JSI9i_1	68.657	41.354			0.33878	0.34604	37.575	3	3	Median	0.32848	0.26688	NaN	1	1	Median	0.49363	0.55969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33878	0.34604	NaN	1	1	Median	146020000	115160000	30859000	48554000	37796000	10758000	31086000	22543000	8542600	0	0	0	66379000	54820000	11558000	14378	3213	13639	86812;86813;86814	117261;117262;117263	117263		2216	3	
EVEVIGGADK	1	Unmodified	1015.5186	0.51858998	809	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		26.744	26.493	2	0.0013043	23490	160511_QHF_FH_JSI11i_1	77.662	33.855			0.77971	0.84242	89.898	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3498	1.5907	NaN	1	1	Median	0.4504	0.44613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	215740000	119380000	96358000	0	0	0	113420000	57043000	56373000	102320000	62336000	39986000	0	0	0	14379	809	13640	86815;86816	117264;117265	117264			2	
EVFDNDGKPR	1	Unmodified	1175.5571	0.55710075	2264	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	14.172	13.321	3	0.020548	10573	160511_QHF_FH_JSI12i_2	40.589	31.635			0.37023	0.40315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37023	0.40315	NaN	1	1	Median	37873000	27127000	10746000	0	0	0	0	0	0	0	0	0	37873000	27127000	10746000	14380	2264	13641	86817	117266	117266			1	
EVFEDAAEIR	0	Unmodified	1177.5615	0.56151742	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.12	4	4	4			3	2	3	1	5	5	5	6	49.009	44.451	2	2.8123E-33	24918	160513_QHF_FH_JSI12Kac_4	190.02	145.32			0.97816	1.0157	8.4564	20	0	Median	1.2299	1.0276	4.0278	4	0	Median	0.86073	1.0202	11.056	5	0	Median	0.9954	0.96831	7.6769	5	0	Median	0.95491	1.0279	8.1926	6	0	Median	13483000000	6720100000	6762900000	3496600000	1387700000	2108900000	3540200000	2041100000	1499100000	3211700000	1557100000	1654600000	3234600000	1734200000	1500400000	14381	1154	13642	86818;86819;86820;86821;86822;86823;86824;86825;86826;86827;86828;86829;86830;86831;86832;86833;86834;86835;86836;86837;86838	117267;117268;117269;117270;117271;117272;117273;117274;117275;117276;117277;117278;117279;117280;117281;117282;117283;117284;117285;117286;117287;117288;117289;117290;117291;117292;117293;117294;117295;117296;117297;117298;117299;117300;117301;117302;117303;117304;117305;117306;117307;117308;117309;117310;117311;117312;117313	117302			47	
EVFEDAAEIRLVSK	1	Unmodified	1604.841	0.84098675	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.201	63.911	3	0.026777	55113	160511_QHF_FH_JSI12i_3	34.954	19.198			0.38088	0.38424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38088	0.38424	NaN	1	0	Median	56943000	41209000	15734000	0	0	0	0	0	0	0	0	0	56943000	41209000	15734000	14382	1154	13643	86839	117314	117314			1	
EVFEMATR	0	Unmodified	981.45897	0.45896661	1957;892	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	3	2	2	36.262	35.386	2	2.5201E-06	30925	160511_QHF_FH_JSI9i_2	143.12	82.333			0.9365	0.97867	28.995	9	1	Median	1.2993	1.0739	1.3138	2	0	Median	0.89706	1.084	17.449	3	0	Plateau	1.1172	1.1267	24.246	2	0	Median	0.53733	0.58514	8.0015	2	1	Median	3786500000	1957400000	1829000000	620260000	287300000	332950000	1113700000	561420000	552280000	1427200000	753770000	673450000	625280000	354930000	270350000	14383	1957;892	13644	86840;86841;86842;86843;86844;86845;86846;86847;86848	117315;117316;117317;117318;117319;117320;117321;117322;117323;117324;117325;117326;117327;117328	117324			14	
EVFETATR	0	Unmodified	951.46616	0.46616048	2016	P62745	RHOB	Rho-related GTP-binding protein RhoB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		19.806	19.4	2	0.0091586	16712	160511_QHF_FH_JSI10i_1	65.246	23.744			0.81433	0.81295	17.816	4	4	Median	1.0016	0.84348	NaN	1	1	Median	0.84395	1.0149	NaN	1	1	Median	0.73115	0.71922	12.111	2	2	Median	NaN	NaN	NaN	0	0	Median	234530000	121600000	112940000	40290000	16385000	23906000	64807000	32503000	32304000	129440000	72707000	56729000	0	0	0	14384	2016	13645	86849;86850;86851;86852	117329;117330;117331;117332	117330			4	
EVFGDDSEISK	1	Unmodified	1224.551	0.55101232	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.66	2					1						2	1	38.837	35.47	2	0.0023193	31919	160511_QHF_FH_JSI11i_1	72.848	51.384			3.784	3.91	91.302	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7833	1.7254	109.81	2	2	Median	3.784	3.9642	NaN	1	1	Median	862850000	152790000	710060000	0	0	0	0	0	0	406620000	74573000	332050000	456230000	78218000	378010000	14385	327	13646	86853;86854;86855	117333;117334;117335	117333			3	
EVFGSSLPSNWQDISLEDSR	0	Unmodified	2265.055	0.054955282	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	1	4	2	90.428	89.948	2	5.326E-33	77521	160511_QHF_FH_JSI12i_2	191.49	181.44			0.95764	1.1164	6.7168	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.98358	1.1132	NaN	1	0	Median	1.1688	1.195	NaN	1	1	Median	1.0334	1.066	6.9385	2	0	Median	75187000	37879000	37309000	0	0	0	22953000	11903000	11050000	20577000	8623600	11954000	31657000	17352000	14305000	14386	3549	13647	86856;86857;86858;86859;86860;86861;86862;86863	117336;117337;117338;117339;117340;117341;117342;117343;117344;117345;117346	117339			11	
EVFGTFGIPFLLR	0	Unmodified	1494.8235	0.82348619	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	2	3	101.06	98.639	2	1.137E-31	50069	160513_QHF_FH_JSI11Kac_6	179.42	146.33			0.91543	0.96083	11.954	8	0	Median	1.2856	1.0942	NaN	1	0	Median	0.87363	1.0459	20.551	2	0	Median	1.051	1.0389	6.556	2	0	Median	0.84824	0.84579	5.4464	3	0	Plateau	1739600000	905860000	833700000	85054000	37651000	47402000	407040000	202130000	204910000	231440000	110600000	120840000	1016000000	555470000	460560000	14387	3922	13648	86864;86865;86866;86867;86868;86869;86870;86871;86872	117347;117348;117349;117350;117351;117352;117353;117354;117355;117356	117350			10	
EVFHFSQAEK	1	Unmodified	1220.5826	0.58258722	3235	Q7L5Y9	MAEA	Macrophage erythroblast attacher	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	32.789	32.695	2	0.00012835	27576	160511_QHF_FH_JSI12i_3	98.048	70.306			0.65676	0.68009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65676	0.68009	NaN	1	1	Median	22361000	14157000	8204700	0	0	0	0	0	0	0	0	0	22361000	14157000	8204700	14388	3235	13649	86873;86874	117357;117358	117358			2	
EVFIPQDGK	1	Unmodified	1031.5288	0.52876073	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		37.1	36.786	2	0.006541	33060	160511_QHF_FH_JSI11i_1	55.549	31.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14389	1665	13650	86875;86876	117359;117360	117359			2	
EVFIPQDGKK	2	Acetyl (K)	1201.6343	0.63428844	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	52.775	43.532	2	0.035218	23380	160513_QHF_FH_JSI12Kac_3	65.347	44.445			0.84597	0.96041	2.884	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7893	0.94102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90672	0.9802	NaN	1	0	Median	5373200	3225400	2147800	0	0	0	2723000	1526400	1196500	0	0	0	2650200	1698900	951230	14390	1665	13651	86877;86878	117361;117362	117361			2	
EVFLPSTPGLGMHVEVK	1	Unmodified	1838.9601	0.96005603	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		79.157	78.465	3	2.1982E-06	69177	160511_QHF_FH_JSI11i_2	77.468	68.184			0.9947	0.86366	11.5	3	0	Median	0.9947	0.86366	NaN	1	0	Median	0.69644	0.84894	NaN	1	0	Median	1.0565	1.0444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86123000	47877000	38245000	14937000	8182600	6754100	27001000	15401000	11600000	44184000	24293000	19891000	0	0	0	14391	3296	13652	86879;86880;86881	117363	117363			1	
EVFLPSTPGLGMHVEVKDPDGK	2	Unmodified	2351.1831	0.18313268	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	74.308	74.163	4	2.8407E-08	64315	160511_QHF_FH_JSI12i_3	93.006	89.054			0.79391	0.76891	0.84887	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83128	0.77354	NaN	1	1	Median	0.75821	0.76431	NaN	1	0	Median	236950000	128640000	108310000	0	0	0	0	0	0	73370000	42447000	30923000	163580000	86195000	77386000	14392	3296	13653	86882;86883	117364;117365	117365			2	
EVFLVMPTGGGK	1	Unmodified	1233.6427	0.64274463	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.16	3	6	2			1	5	3		3	6	6	5	70.957	66.672	2	2.42E-07	61139	160511_QHF_FH_JSI11i_1	130.98	93.433			1.0721	1.0786	18.577	17	8	Median	1.267	1.0786	23.766	3	2	Plateau	0.81956	0.98251	18.355	5	3	Median	1.0723	1.0827	12.759	5	2	Median	1.1544	1.253	15.172	4	1	Median	2077100000	1036500000	1040600000	234780000	92835000	141950000	547330000	323420000	223910000	875450000	413480000	461970000	419530000	206800000	212730000	14393	1579	13654	86884;86885;86886;86887;86888;86889;86890;86891;86892;86893;86894;86895;86896;86897;86898;86899;86900;86901;86902;86903	117366;117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379;117380;117381;117382;117383;117384;117385;117386;117387;117388;117389;117390;117391;117392;117393	117366			28	
EVFLVMPTGGGK	1	Oxidation (M)	1249.6377	0.63765925	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0			By MS/MS		14.5	0.5							1	1				2		61.936	50.952	2	0.0039102	27787	160513_QHF_FH_JSI11Kac_5	72.006	42.919			1.1043	1.0701	39.479	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1043	1.0701	39.479	2	2	Median	NaN	NaN	NaN	0	0	Median	7084900	3447800	3637100	0	0	0	0	0	0	7084900	3447800	3637100	0	0	0	14394	1579	13654	86904;86905	117394;117395	117395		1238	2	
EVFNILQAAYVSK	1	Unmodified	1480.7926	0.79257999	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.53	1	5						1	2	2	4	2	1	86.781	83.374	2	2.6711E-07	76760	160511_QHF_FH_JSI11i_2	98.105	78.834			0.99286	1.05	14.646	7	3	Median	1.1313	0.97194	14.295	2	1	Median	0.82797	0.99392	16.981	3	2	Median	0.99286	1.05	NaN	1	0	Median	1.1068	1.2173	NaN	1	0	Median	282480000	152940000	129540000	80087000	34081000	46006000	129640000	84206000	45429000	39236000	20064000	19172000	33521000	14585000	18936000	14395	907	13655	86906;86907;86908;86909;86910;86911;86912;86913;86914	117396;117397;117398;117399;117400;117401;117402;117403;117404;117405;117406;117407	117402			12	
EVFPIMAK	1	Unmodified	933.49937	0.49937486	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	57.133	56.207	2	0.014012	48586	160511_QHF_FH_JSI11i_2	51.787	32.151			0.82964	0.88066	19.108	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76713	0.76936	NaN	1	0	Median	0.89725	1.0081	NaN	1	0	Median	210310000	131240000	79068000	0	0	0	0	0	0	155200000	97746000	57457000	55105000	33494000	21611000	14396	5672	13656	86915;86916	117408	117408			1	
EVFPTAALMPGAEK	1	Unmodified	1459.7381	0.73810158	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.337	72.386	2	0.00014984	62444	160511_QHF_FH_JSI12i_2	110.86	85.471			0.16546	0.1732	2.4596	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17476	0.17021	NaN	1	1	Median	0.15665	0.17624	NaN	1	1	Median	193450000	167650000	25793000	0	0	0	0	0	0	81957000	69574000	12382000	111490000	98078000	13411000	14397	2274	13657	86917;86918	117409;117410	117409			2	
EVFPVLAAK	1	Unmodified	972.56442	0.56441796	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.58	2	4					1	1		1	2	2	3	61.509	59.312	2	4.8075E-05	52360	160511_QHF_FH_JSI10i_2	98.299	98.299			0.89823	0.99221	24.193	7	1	Median	1.0858	0.92163	NaN	1	0	Median	0.81146	0.9863	0.84548	2	0	Median	1.0762	1.0671	NaN	1	0	Median	0.89823	1.0105	41.186	3	1	Median	752650000	395040000	357610000	140400000	74219000	66185000	203090000	119270000	83823000	213020000	102220000	110800000	196130000	99328000	96806000	14398	3766	13658	86919;86920;86921;86922;86923;86924;86925;86926	117411;117412;117413;117414;117415;117416;117417;117418;117419;117420	117420			10	
EVFQIASNDHDAAINR	0	Unmodified	1798.8598	0.85982471	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	44.726	44.036	2;3	2.8039E-08	37599	160511_QHF_FH_JSI12i_3	101.39	83.122			0.9433	0.95304	4.9277	6	0	Median	1.0296	0.91105	NaN	1	0	Median	0.78102	0.93988	NaN	1	0	Median	0.98991	0.97574	4.6779	2	0	Median	0.9433	1.0007	5.5513	2	0	Median	478710000	241310000	237400000	48457000	21040000	27416000	75064000	42252000	32812000	180910000	80481000	100430000	174280000	97538000	76746000	14399	5367	13659	86927;86928;86929;86930;86931;86932;86933	117421;117422;117423;117424;117425;117426;117427;117428	117427			6	
EVFRPLKPADLTALAK	2	Unmodified	1768.0247	0.024705193	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		70.801	69.821	4	9.9333E-05	58656	160511_QHF_FH_JSI10i_3	83.106	72.638			0.73876	0.6175	15.848	3	3	Plateau	0.73876	0.6175	NaN	1	1	Median	0.4098	0.47875	NaN	1	1	Median	0.69518	0.64037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	99089000	57034000	42056000	34948000	21059000	13889000	25326000	16692000	8633400	38816000	19283000	19533000	0	0	0	14400	733	13660	86934;86935;86936	117429;117430;117431	117430			3	
EVFSLAGPVVSMAGHGEQLFIVYHR	0	Unmodified	2742.3952	0.39519114	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.349	84.628	4	2.964E-27	48086	160513_QHF_FH_JSI10Kac_6	137.45	130.17			0.82257	0.95843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82257	0.95843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80753000	40886000	39867000	0	0	0	80753000	40886000	39867000	0	0	0	0	0	0	14401	560	13661	86937	117432	117432			1	
EVFSMAGVVVR	0	Unmodified	1192.6274	0.62742892	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.56	1	4	1				1	4	4	4	4	4	3	73.003	66.862	2	1.0143E-19	35163	160513_QHF_FH_JSI11Kac_5	163.32	135.15			1.2126	1.2561	15.103	15	3	Median	1.467	1.2314	11.173	4	2	Median	0.91121	1.099	16.065	4	1	Median	1.2479	1.2651	15.197	4	0	Median	1.1509	1.2992	16.389	3	0	Median	4694900000	2194600000	2500300000	1053300000	433750000	619500000	1374300000	731640000	642630000	1384000000	619560000	764420000	883420000	409630000	473790000	14402	1765	13662	86938;86939;86940;86941;86942;86943;86944;86945;86946;86947;86948;86949;86950;86951;86952	117433;117434;117435;117436;117437;117438;117439;117440;117441;117442;117443;117444;117445;117446;117447;117448;117449;117450;117451;117452;117453	117447			21	
EVFSMAGVVVR	0	Oxidation (M)	1208.6223	0.62234354	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.852						1	5	8	5	4	6	5	4	56.556	46.282	2	1.7751E-27	24587	160513_QHF_FH_JSI9Kac_5	186.78	145.13			0.9935	0.98587	8.3906	19	0	Median	1.2656	1.0808	8.8787	4	0	Median	0.89397	1.0545	8.8015	6	0	Median	1.0928	1.0739	6.3938	5	0	Linear	0.89864	0.97589	11.954	4	0	Median	432830000	220760000	212060000	144060000	65363000	78702000	133850000	79478000	54369000	104560000	50648000	53910000	50358000	25276000	25082000	14403	1765	13662	86953;86954;86955;86956;86957;86958;86959;86960;86961;86962;86963;86964;86965;86966;86967;86968;86969;86970;86971	117454;117455;117456;117457;117458;117459;117460;117461;117462;117463;117464;117465;117466;117467;117468;117469;117470;117471;117472;117473;117474;117475;117476;117477;117478;117479;117480;117481;117482;117483;117484	117455		1438	30	
EVGAFGTPVINLGTR	0	Unmodified	1529.8202	0.82019173	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.33	6.13		2						1				2	1	81.122	70.571	2	1.734E-11	67875	160511_QHF_FH_JSI11i_2	106.26	82.938			0.82647	0.80718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82647	0.80718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2029000	1087300	941690	0	0	0	0	0	0	2029000	1087300	941690	0	0	0	14404	5485	13663	86972;86973;86974	117485;117486;117487	117486			3	
EVGDGTTSVVIIAAELLK	1	Unmodified	1814.0037	0.0036949795	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.52	7	8	7						10	6	8	9	9	101.29	98.75	2;3	0	88403	160511_QHF_FH_JSI12i_2	417.98	403.3			0.93815	0.94151	17.032	31	3	Median	1.1426	0.96074	26.312	6	0	Median	0.67753	0.82075	8.914	8	1	Median	1.0508	1.0482	16.431	8	0	Median	0.92661	0.95185	7.3001	9	2	Median	7664100000	3868700000	3795400000	1159500000	534440000	625080000	1727500000	1013400000	714080000	2457600000	1120800000	1336800000	2319400000	1200000000	1119400000	14405	1132	13664	86975;86976;86977;86978;86979;86980;86981;86982;86983;86984;86985;86986;86987;86988;86989;86990;86991;86992;86993;86994;86995;86996;86997;86998;86999;87000;87001;87002;87003;87004;87005;87006	117488;117489;117490;117491;117492;117493;117494;117495;117496;117497;117498;117499;117500;117501;117502;117503;117504;117505;117506;117507;117508;117509;117510;117511;117512;117513;117514;117515;117516;117517;117518;117519;117520;117521;117522;117523;117524;117525;117526;117527;117528;117529;117530;117531;117532;117533;117534;117535;117536;117537;117538;117539;117540	117498			53	
EVGDGTTSVVIIAAELLKNADELVK	2	Unmodified	2583.4007	0.40071326	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	103.83	103.82	3	1.8164E-06	90529	160511_QHF_FH_JSI12i_3	64.954	52.998			0.78152	0.83127	110.62	2	1	Median	NaN	NaN	NaN	0	0	Median	0.33318	0.38021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8332	1.8174	NaN	1	0	Median	31625000	11220000	20405000	0	0	0	4840900	4141400	699490	0	0	0	26784000	7078300	19706000	14406	1132	13665	87007;87008	117541;117542	117542			2	
EVGEAFTILSDPK	1	Unmodified	1404.7137	0.71366097	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	71.927	71.236	2	3.4983E-05	62359	160511_QHF_FH_JSI11i_2	135.99	114.52			0.8938	0.7607	25.585	7	7	Median	0.89149	0.73916	4.0624	2	2	Median	0.92237	1.0705	NaN	1	1	Median	0.90705	0.90051	45.244	2	2	Median	0.8593	0.92848	28.343	2	2	Median	728220000	467980000	260240000	125270000	76177000	49095000	98083000	61920000	36163000	301960000	212730000	89231000	202900000	117150000	85753000	14407	4294	13666	87009;87010;87011;87012;87013;87014;87015	117543;117544;117545;117546;117547;117548;117549	117549			7	
EVGEHLVSIK	1	Unmodified	1109.6081	0.60807369	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	35.406	34.485	2;3	0.00039558	29277	160511_QHF_FH_JSI11i_2	64.439	48.777			0.97008	1.0869	30.167	6	1	Median	0.82267	0.70471	NaN	1	0	Median	0.94445	1.1557	NaN	1	0	Median	1.2182	1.2183	18.109	2	0	Median	0.75787	0.84165	38.133	2	1	Median	448980000	225850000	223130000	80356000	38665000	41691000	31969000	15349000	16620000	243570000	121250000	122320000	93083000	50587000	42496000	14408	512	13667	87016;87017;87018;87019;87020;87021	117550;117551;117552;117553;117554;117555	117554			5	
EVGEHLVSIKK	2	Unmodified	1237.703	0.7030367	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							3	3	3	4	26.705	26.103	2;3;4	6.0053E-05	21684	160511_QHF_FH_JSI10i_3	78.903	57.157			1.0031	0.98606	96.989	11	6	Median	1.1973	0.95272	9.7059	3	0	Plateau	0.88644	1.0403	6.8542	3	1	Median	3.2386	3.043	153.59	3	3	Median	0.21283	0.21398	13.843	2	2	Median	1528000000	751280000	776730000	305940000	141680000	164260000	415250000	195600000	219650000	391020000	160310000	230700000	415800000	253680000	162110000	14409	512	13668	87022;87023;87024;87025;87026;87027;87028;87029;87030;87031;87032;87033;87034	117556;117557;117558;117559;117560;117561;117562;117563;117564;117565;117566;117567;117568;117569;117570	117561			14	
EVGETLLYYGCR	0	Unmodified	1458.6813	0.68131498	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.38	6.44	3	2					1	2			3	2	3	64.539	60.066	2	1.2021E-16	51483	160511_QHF_FH_JSI12i_2	205.83	186.56			0.8651	0.93385	25.212	8	4	Median	NaN	NaN	NaN	0	0	Median	0.71805	0.85296	7.9986	3	3	Median	0.84929	0.82501	12.314	2	0	Median	1.1896	1.2739	12.415	3	1	Plateau	314510000	177460000	137050000	0	0	0	145760000	83538000	62220000	42358000	25107000	17251000	126400000	68817000	57582000	14410	1100	13669	87035;87036;87037;87038;87039;87040;87041;87042	117571;117572;117573;117574;117575;117576;117577;117578	117571			8	
EVGHNIYILALQLSR	0	Unmodified	1724.9574	0.95735391	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.7	6.13			2						4	2	3	1		84.368	76.751	2;3	1.8558E-32	43539	160513_QHF_FH_JSI10Kac_6	164.65	141.42			1.4151	1.185	13.584	3	0	Median	1.4677	1.2445	6.9325	2	0	Median	0.83127	0.99933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	400230000	195320000	204910000	250120000	104390000	145740000	150110000	90928000	59178000	0	0	0	0	0	0	14411	2547	13670	87043;87044;87045;87046;87047;87048	117579;117580;117581;117582;117583;117584;117585	117585			7	
EVGIPPEQSLETAK	1	Unmodified	1496.7722	0.77223848	1939	P61158;Q9C0K3	ACTR3;ACTR3C	Actin-related protein 3;Actin-related protein 3C	no	no	0	0	0	0		By MS/MS			1	0	1										1			50.456	50.041	2	0.0089999	45070	160511_QHF_FH_JSI10i_1	47.559	37.763			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14412	1939	13671	87049	117586	117586			1	
EVGKDVSDEK	2	Acetyl (K)	1146.5404	0.54044763	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	2	1	24.078	16.809	2	0.0028181	8328	160513_QHF_FH_JSI10Kac_2	77.379	50.995			0.92338	1.0018	12.841	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89618	1.0426	NaN	1	0	Median	0.94696	0.89578	18.046	2	0	Median	0.9514	0.98612	NaN	1	0	Median	16310000	8668500	7641400	0	0	0	4371400	1997500	2373900	6369400	3889200	2480200	5569000	2781800	2787300	14413	517	13672	87050;87051;87052;87053	117587;117588;117589;117590	117588	265		4	
EVGMYGK	1	Unmodified	782.36328	0.36327531	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		17.451	17.331	2	0.035052	14606	160511_QHF_FH_JSI11i_1	50.966	34.411			0.27587	0.27004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27587	0.27004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	255320000	158710000	96605000	0	0	0	0	0	0	255320000	158710000	96605000	0	0	0	14414	2734	13673	87054	117591	117591			1	
EVGQQLQDDLMK	1	Unmodified	1402.6762	0.67622961	467	O75044;P0DMP2	SRGAP2;SRGAP2B	SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	54.224	53.561	2	1.1631E-10	47616	160511_QHF_FH_JSI9i_1	143.5	98.749			1.0022	0.87167	38.317	5	2	Median	1.0665	0.87167	NaN	1	0	Median	1.0022	1.1931	NaN	1	0	Median	0.86421	0.82284	NaN	1	0	Median	0.92769	0.96732	71.196	2	2	Median	207620000	104050000	103570000	47811000	29589000	18222000	43673000	21306000	22367000	39647000	17271000	22376000	76486000	35883000	40602000	14415	467	13674	87055;87056;87057;87058;87059	117592;117593;117594;117595;117596;117597;117598;117599;117600	117600			9	
EVGSHFDDFVTNLIEK	1	Unmodified	1848.8894	0.8893935	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.442		4	11							1	2	7	5	92.248	92.037	2;3	1.8413E-22	79655	160511_QHF_FH_JSI12i_3	182.02	158.41			0.99682	1.0251	30.791	11	6	Median	1.4216	1.2015	NaN	1	0	Median	0.99121	1.1909	29.574	2	1	Median	0.96504	0.88954	37.304	4	2	Median	0.85748	0.87583	30.921	4	3	Median	1511500000	749930000	761570000	53973000	20540000	33433000	102710000	57771000	44943000	509570000	275440000	234130000	845250000	396180000	449070000	14416	1439	13675	87060;87061;87062;87063;87064;87065;87066;87067;87068;87069;87070;87071;87072;87073;87074	117601;117602;117603;117604;117605;117606;117607;117608;117609;117610;117611;117612;117613;117614;117615;117616;117617;117618;117619;117620;117621;117622;117623;117624	117618			24	
EVGSIIGK	1	Unmodified	801.45962	0.45961853	2656;2657;1893	Q15365;P57723;P57721;Q15366	PCBP1;PCBP4;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	5.37	9	7	3				5	1		7	6	6	6	31.816	28.887	1;2	0.00072265	17357	160513_QHF_FH_JSI11Kac_4	96.492	28.511			0.6638	0.67746	93.958	25	22	Median	0.59175	0.48091	100.86	7	7	Median	0.75435	0.89591	93.244	6	6	Median	1.018	0.99865	131.09	6	5	Median	0.7001	0.72939	62.001	6	4	Median	19223000000	9392500000	9830600000	4240300000	1765600000	2474700000	4480300000	2342600000	2137700000	5900200000	2913100000	2987100000	4602300000	2371200000	2231100000	14417	2656;1893;2657	13676	87075;87076;87077;87078;87079;87080;87081;87082;87083;87084;87085;87086;87087;87088;87089;87090;87091;87092;87093;87094;87095;87096;87097;87098;87099	117625;117626;117627;117628;117629;117630;117631;117632;117633;117634;117635;117636;117637;117638;117639;117640;117641;117642;117643;117644;117645;117646;117647;117648;117649;117650;117651;117652;117653;117654;117655	117641			31	
EVGSIIGKK	2	Unmodified	929.55458	0.55458155	2656;2657;1893	Q15365;P57723;P57721;Q15366	PCBP1;PCBP4;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	20.678	20.074	2;3	0.00079175	16309	160511_QHF_FH_JSI12i_3	90.657	50.554			4.2882	3.6179	119.51	5	5	Median	4.4198	3.6179	NaN	1	1	Median	0.74844	0.85166	162.71	2	2	Median	NaN	NaN	NaN	0	0	Median	4.4232	4.4872	3.1702	2	2	Median	278080000	119490000	158590000	22125000	3943700	18182000	56424000	34170000	22253000	37768000	37768000	0	161760000	43607000	118150000	14418	2656;1893;2657	13677	87100;87101;87102;87103;87104;87105;87106	117656;117657;117658;117659;117660;117661;117662	117662			7	
EVGSPPLDPTER	0	Unmodified	1295.6357	0.635745	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	45.602	36.713	2	0.04161	20266	160513_QHF_FH_JSI12Kac_3	42.743	31.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14419	4047	13678	87107	117663	117663			1	
EVGVYEALK	1	Unmodified	1006.5335	0.53351176	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	3.91	4	1	3				1			1	2	2	4	44.709	42.894	2	5.1637E-06	38505	160511_QHF_FH_JSI10i_1	133.23	75.954			0.77142	0.81714	41.677	9	9	Median	0.46234	0.37932	NaN	1	1	Median	0.7943	0.93085	44.707	2	2	Median	1.0822	1.0271	8.3521	2	2	Median	0.69155	0.74904	38.757	4	4	Median	4819500000	1886200000	2933300000	186400000	106800000	79600000	1316900000	470960000	845910000	1177600000	360300000	817330000	2138600000	948130000	1190500000	14420	1503	13679	87108;87109;87110;87111;87112;87113;87114;87115;87116	117664;117665;117666;117667;117668;117669;117670;117671;117672	117669			9	
EVHELYKEK	2	Acetyl (K)	1215.6136	0.61355299	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		30.801	21.19	3	0.014061	12975	160513_QHF_FH_JSI11Kac_5	49.3	36.181			0.12144	0.11968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12144	0.11968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3713500	3104500	608970	0	0	0	0	0	0	3713500	3104500	608970	0	0	0	14421	962	13680	87117	117673	117673	728		1	
EVHGMAQPSQNNYWK	1	Unmodified	1787.805	0.80495237	4273	Q99470	SDF2	Stromal cell-derived factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	36.954	36.494	2;3	2.8044E-05	30908	160511_QHF_FH_JSI12i_3	98.592	94.124			1.2014	1.4819	61.52	5	1	Median	4.3585	3.8345	NaN	1	0	Median	1.2014	1.4819	NaN	1	0	Median	0.86711	0.80152	NaN	1	0	Median	1.3702	1.3823	48.003	2	1	Median	359740000	130640000	229100000	27493000	4570400	22923000	46805000	18783000	28021000	113560000	48050000	65511000	171880000	59234000	112640000	14422	4273	13681	87118;87119;87120;87121;87122;87123	117674;117675;117676;117677;117678;117679;117680;117681	117680			8	
EVHKMVVESAYEVIK	2	Acetyl (K)	1801.9284	0.92842155	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.882	66.546	3	0.00010151	36263	160513_QHF_FH_JSI11Kac_6	88.385	78.189			0.36079	0.35293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36079	0.35293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44652000	31917000	12735000	0	0	0	0	0	0	44652000	31917000	12735000	0	0	0	14423	864	13682	87124	117682	117682	558		1	
EVHKMVVESAYEVIK	2	Acetyl (K);Oxidation (M)	1817.9233	0.92333617	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		71.408	60.607	3	0.00091154	32406	160513_QHF_FH_JSI11Kac_5	69.729	57.444			0.25685	0.25335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25685	0.25335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5530900	5182100	348740	0	0	0	0	0	0	5530900	5182100	348740	0	0	0	14424	864	13682	87125	117683;117684	117683	558	400	2	
EVHKQVVESAYEVIK	2	Acetyl (K)	1798.9465	0.94651445	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.2	0.373								5	1		3	3		72.552	62.111	2;3	0.00014808	33183	160513_QHF_FH_JSI11Kac_5	84.874	73.612			0.25346	0.2497	86.007	5	1	Median	NaN	NaN	NaN	0	0	Median	0.76182	0.90471	7.9588	2	0	Median	0.23422	0.23013	32.193	3	1	Median	NaN	NaN	NaN	0	0	Median	146670000	115620000	31048000	0	0	0	13918000	5467900	8450000	132750000	110160000	22598000	0	0	0	14425	761	13683	87126;87127;87128;87129;87130;87131	117685;117686;117687;117688;117689;117690	117686	366		5	
EVHKSGYLAGDK	2	Acetyl (K)	1344.6674	0.66737948	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.6	0.49							2	3			2	3		33.489	23.984	2;3	0.00035902	14154	160513_QHF_FH_JSI11Kac_5	75.764	62.364			0.38657	0.37856	59.421	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78821	0.92784	9.6182	2	0	Median	0.30231	0.30195	14.766	3	0	Median	NaN	NaN	NaN	0	0	Median	74218000	55223000	18995000	0	0	0	10276000	4607800	5668300	63942000	50615000	13327000	0	0	0	14426	1270	13684	87132;87133;87134;87135;87136	117691;117692;117693;117694;117695;117696;117697;117698;117699	117695	1173;1174		9	
EVHKSGYLSSER	1	Acetyl (K)	1432.6947	0.69465686	1073	P15311	EZR	Ezrin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.7	0.471								1	2		1	2		31.799	22.751	2;3	0.0028159	12852	160513_QHF_FH_JSI11Kac_6	51.092	44.659			0.46475	0.46137	67.949	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0695	1.2819	NaN	1	0	Median	0.40989	0.40413	18.733	2	1	Median	NaN	NaN	NaN	0	0	Median	27724000	16731000	10993000	0	0	0	9204500	3794100	5410300	18519000	12936000	5583100	0	0	0	14427	1073	13685	87137;87138;87139	117700;117701;117702	117700	913		3	
EVHTQAENAEFMR	0	Unmodified	1560.6991	0.69909031	934	P09601	HMOX1	Heme oxygenase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.79	27.49	2	0.012889	23107	160511_QHF_FH_JSI12i_2	45.359	35.927			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14428	934	13686	87140	117703	117703			1	
EVIDLLKPDQVEGIQK	2	Unmodified	1823.004	0.0040293305	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								2	4	4	3	72.418	71.762	2;3	4.9098E-08	63506	160511_QHF_FH_JSI10i_2	98.507	83.549			0.84331	0.88789	17.748	7	7	Median	1.1299	0.91665	NaN	1	1	Median	0.79192	0.93079	NaN	1	1	Median	0.89118	0.88789	30.44	3	3	Median	0.80863	0.87098	0.67239	2	2	Median	569790000	280410000	289380000	13550000	7590300	5959800	56287000	26713000	29574000	292900000	147920000	144970000	207060000	98185000	108880000	14429	3328	13687	87141;87142;87143;87144;87145;87146;87147;87148;87149;87150;87151;87152;87153	117704;117705;117706;117707;117708;117709;117710;117711;117712;117713;117714;117715;117716	117715			13	
EVIELPLTNPELFQR	0	Unmodified	1796.9672	0.96724989	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	100.09	99.966	2	6.9751E-40	87753	160511_QHF_FH_JSI9i_2	202.16	183.41			0.8728	0.91675	14.599	8	1	Median	1.2301	1.0196	22.189	2	0	Median	0.72831	0.86404	21.009	2	0	Median	0.95293	0.94909	16.33	2	1	Median	0.83934	0.91675	2.1364	2	0	Median	360160000	191580000	168580000	65844000	34566000	31278000	110560000	64518000	46040000	101390000	46875000	54515000	82363000	45617000	36747000	14430	2006	13688	87154;87155;87156;87157;87158;87159;87160;87161	117717;117718;117719;117720;117721;117722;117723;117724;117725;117726;117727;117728;117729;117730;117731;117732	117729			16	
EVIELPVK	1	Unmodified	925.54843	0.54843354	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	56.316	55.485	2	0.0007303	49395	160511_QHF_FH_JSI9i_1	98.997	54.55			0.90146	0.97582	26.676	6	0	Median	1.0323	0.87105	30.916	2	0	Median	0.83346	0.98739	NaN	1	0	Median	0.97501	0.96438	NaN	1	0	Median	0.78175	0.85827	49.011	2	0	Median	1658700000	800970000	857690000	409140000	183130000	226020000	408860000	220440000	188420000	423460000	195900000	227550000	417200000	201500000	215710000	14431	1984	13689	87162;87163;87164;87165;87166;87167	117733;117734;117735;117736;117737;117738;117739;117740;117741	117740			9	
EVIESLLSLLFVQK	1	Unmodified	1616.9389	0.93890988	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		100.04	92.466	2;3	1.2936E-07	55396	160513_QHF_FH_JSI10Kac_6	108.59	101.71			1.4395	1.5496	71.813	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80834	0.93258	NaN	1	0	Median	2.5635	2.5748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94026000	40424000	53603000	0	0	0	57452000	34659000	22793000	36574000	5764400	30810000	0	0	0	14432	3009	13690	87168;87169	117742;117743;117744	117744			3	
EVIFSVEDGSVK	1	Unmodified	1307.6609	0.66089712	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.734	58.086	2	1.1813E-05	52823	160511_QHF_FH_JSI12i_1	117.02	74.424			1.1406	1.1162	11.745	4	0	Median	1.1689	0.9713	NaN	1	0	Median	0.98504	1.1398	NaN	1	0	Median	1.113	1.0932	NaN	1	0	Median	1.2659	1.2911	NaN	1	0	Median	624200000	256980000	367230000	115420000	58669000	56751000	200740000	91956000	108780000	191430000	71062000	120370000	116610000	35289000	81323000	14433	737	13691	87170;87171;87172;87173	117745;117746;117747;117748;117749;117750	117746			6	
EVILVLSAPFLR	0	Unmodified	1355.8177	0.81767253	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.142	87.421	2	0.00017569	50129	160513_QHF_FH_JSI10Kac_6	93.096	59.871			0.41398	0.47855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41398	0.47855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52598000	31334000	21264000	0	0	0	52598000	31334000	21264000	0	0	0	0	0	0	14434	413	13692	87174	117751	117751			1	
EVINGNIK	1	Unmodified	885.49198	0.4919813	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.6	6.22	2					1	2			1		1	3	26.727	19.077	2	0.00063176	16163	160511_QHF_FH_JSI9i_1	97.071	36.11			0.96539	0.94431	28.254	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96539	0.94431	NaN	1	0	Median	1.3407	1.4438	19.873	2	2	Median	20236000	10024000	10212000	0	0	0	0	0	0	11811000	6176000	5634600	8425400	3847500	4577900	14435	570	13693	87175;87176;87177;87178;87179	117752;117753;117754;117755;117756	117754			5	
EVINHHPDVQTK	1	Unmodified	1415.7157	0.71572665	2999	Q5VYS8	ZCCHC6	Terminal uridylyltransferase 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	11.462	11.551	3	0.0056811	8808	160511_QHF_FH_JSI12i_3	48.524	25.475			1.7859	1.6814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7859	1.6814	NaN	1	1	Median	31434000	9498100	21936000	0	0	0	0	0	0	0	0	0	31434000	9498100	21936000	14436	2999	13694	87180	117757	117757			1	
EVIPISDPELK	1	Unmodified	1238.6758	0.6758189	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			61.802	61.065	2	0.0025022	54236	160511_QHF_FH_JSI9i_1	60.398	37.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14437	3059	13695	87181;87182	117758;117759	117759			2	
EVIPVNVPEAQEEMK	1	Oxidation (M)	1726.8448	0.8447515	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1					1	1	1	1	58.76	55.907	2	0.0010683	50136	160511_QHF_FH_JSI10i_1	68.44	50.632			1.0819	1.1541	5.5163	4	0	Linear	1.4716	1.2032	NaN	1	0	Median	0.91774	1.0995	NaN	1	0	Median	1.1599	1.126	NaN	1	0	Median	1.0091	1.0546	NaN	1	0	Median	267880000	109670000	158220000	91161000	31572000	59589000	82157000	37727000	44429000	89726000	38169000	51557000	4838200	2197600	2640600	14438	878	13696	87183;87184;87185;87186	117760;117761;117762;117763;117764;117765;117766;117767	117763		427	8	
EVIPVNVPEAQEEMK	1	Unmodified	1710.8498	0.84983687	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	65.523	64.908	2;3	1.388E-29	58964	160511_QHF_FH_JSI11i_1	184.31	147.73			1.0401	1.0662	7.4811	8	0	Median	1.1608	0.94292	1.1829	2	0	Median	0.93748	1.1004	3.9389	2	0	Median	1.094	1.0662	8.5684	2	0	Median	1.0312	1.0808	2.4458	2	0	Median	3441900000	1746300000	1695600000	839520000	358270000	481250000	918870000	503630000	415250000	795820000	436490000	359330000	887700000	447930000	439760000	14439	878	13696	87187;87188;87189;87190;87191;87192;87193;87194	117768;117769;117770;117771;117772;117773;117774;117775;117776;117777;117778;117779;117780;117781;117782;117783;117784;117785;117786;117787;117788;117789	117769			22	
EVIQEWNLTNIK	1	Unmodified	1485.7827	0.78274359	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	2	1	1	73.01	72.265	2	7.118E-16	63492	160511_QHF_FH_JSI11i_2	159.94	133.43			0.92984	0.9828	14.299	5	1	Median	1.0185	0.87392	NaN	1	0	Median	0.94109	1.1202	18.509	2	1	Median	0.92984	0.94117	NaN	1	0	Median	0.9181	1.0223	NaN	1	0	Median	572230000	290280000	281950000	80158000	38595000	41563000	223680000	117560000	106120000	123780000	64404000	59371000	144610000	69717000	74895000	14440	5616	13697	87195;87196;87197;87198;87199;87200	117790;117791;117792;117793;117794;117795;117796;117797;117798;117799	117796			10	
EVITAQDTVIK	1	Unmodified	1215.6711	0.67106787	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	52.405	43.064	2	2.3368E-07	22630	160513_QHF_FH_JSI10Kac_3	114.5	74.495			1.017	0.94942	9.8502	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76564	0.91076	NaN	1	0	Median	1.0521	1.0356	NaN	1	0	Median	1.017	1.1053	NaN	1	0	Median	23040000	11884000	11156000	0	0	0	8313900	4950800	3363000	7961600	3642400	4319200	6765000	3291100	3473800	14441	679	13698	87201;87202;87203;87204	117800;117801;117802;117803;117804;117805;117806	117805			7	
EVITEIEK	1	Unmodified	959.51753	0.51752734	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS		By matching		1	0	2									1		1		33.79	33.041	2	0.020585	28963	160511_QHF_FH_JSI9i_1	45.68	21.477			0.77089	0.68293	8.7804	2	0	Median	0.79468	0.64182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74781	0.72668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108930000	54855000	54073000	49746000	23301000	26445000	0	0	0	59181000	31554000	27628000	0	0	0	14442	2977	13699	87205;87206	117807	117807			1	
EVIYDMLNALAAYHAPEEADK	1	Unmodified	2362.1151	0.1151127	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.34	101.22	3	8.0795E-23	88912	160511_QHF_FH_JSI11i_2	162.81	150.09			1.2751	1.2972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2751	1.2972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	181960000	62142000	119810000	0	0	0	0	0	0	181960000	62142000	119810000	0	0	0	14443	3290	13700	87207	117808	117808			1	
EVKEQSGQK	2	Acetyl (K)	1073.5353	0.53530267	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	6.7555	-0.48728	2	4.3368E-05	2521	160513_QHF_FH_JSI11Kac_3	126.41	67.167			0.96567	0.99945	19.703	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79795	0.94452	2.6499	2	0	Median	1.2732	1.2694	28.467	2	0	Median	0.96567	1.0216	13.624	2	0	Median	35636000	18092000	17544000	0	0	0	9643900	5095600	4548200	8669900	3739900	4930000	17322000	9256600	8065300	14444	2409	13701	87208;87209;87210;87211;87212;87213	117809;117810;117811;117812;117813	117810	2474		5	
EVLADFQR	0	Unmodified	976.49779	0.49779495	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	39.159	38.344	2	0.0027255	33793	160511_QHF_FH_JSI10i_2	77.923	50.792			1.169	1.1809	8.8649	7	0	Median	1.5163	1.3006	13.983	2	0	Median	0.93234	1.123	5.3823	2	0	Median	1.2001	1.1885	0.90502	2	0	Median	1.1395	1.2713	NaN	1	0	Median	546090000	262860000	283230000	111420000	47153000	64267000	137670000	70043000	67631000	189500000	99587000	89917000	107490000	46075000	61417000	14445	561	13702	87214;87215;87216;87217;87218;87219;87220	117814;117815;117816;117817;117818;117819;117820;117821;117822;117823	117823			10	
EVLASDLVVK	1	Unmodified	1071.6176	0.61757574	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5.33	6.13	2						1			1		2		65.176	54.112	2	0.011117	48122	160511_QHF_FH_JSI9i_1	47.187	37.973			2.9514	2.9603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9514	2.9603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5095600	983840	4111800	0	0	0	0	0	0	5095600	983840	4111800	0	0	0	14446	2405	13703	87221;87222;87223	117824;117825;117826	117826			3	
EVLASEAILNVPDK	1	Unmodified	1496.8086	0.80862399	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	70.378	69.75	2;3	1.121E-14	63106	160511_QHF_FH_JSI10i_1	159.99	126.61			0.69915	0.78402	21.13	5	2	Median	1.1664	0.96265	10.731	2	1	Median	0.66651	0.78402	NaN	1	0	Median	0.62383	0.59893	NaN	1	0	Median	0.69915	0.70735	NaN	1	1	Median	139800000	84762000	55037000	52507000	29576000	22931000	28649000	18187000	10462000	33189000	20885000	12304000	25453000	16114000	9339700	14447	3032	13704	87224;87225;87226;87227;87228	117827;117828;117829;117830;117831;117832;117833;117834	117830			8	
EVLASHLVQLIPILVNGMK	1	Unmodified	2073.202	0.20201763	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	102.99	102.92	3	9.1547E-19	89356	160511_QHF_FH_JSI12i_3	164.01	159.48			0.88697	0.946	10.639	4	0	Median	1.0951	0.93665	NaN	1	0	Median	0.8235	0.95545	NaN	1	0	Median	0.82739	0.76839	NaN	1	0	Median	0.95083	0.95719	NaN	1	0	Median	174740000	88806000	85935000	9559700	4083000	5476600	33190000	15914000	17276000	50983000	27955000	23027000	81009000	40854000	40155000	14448	205	13705	87229;87230;87231;87232	117835;117836;117837;117838;117839;117840;117841;117842	117841			8	
EVLASQLLVLTGQR	0	Unmodified	1525.8828	0.88279198	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.382	87.76	2	0.00011555	77319	160511_QHF_FH_JSI11i_2	104.59	18.318			0.98898	1.0104	4.2672	4	0	Median	1.1152	0.97804	NaN	1	0	Median	0.82284	1.0046	NaN	1	0	Median	1.049	1.0817	NaN	1	0	Median	0.93241	1.0163	NaN	1	0	Median	70089000	34891000	35198000	15337000	8179500	7158000	14670000	8329500	6340600	21389000	9557700	11831000	18692000	8824200	9868100	14449	4678	13706	87233;87234;87235;87236	117843;117844;117845;117846	117845			2	
EVLAWMILHSLYQAR	0	Unmodified	1828.9658	0.96581011	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.045	86.743	3	3.7189E-33	49243	160513_QHF_FH_JSI9Kac_6	163.23	130.96			1.2391	1.2407	17.263	3	0	Median	1.0886	0.9477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3058	1.2407	NaN	1	0	Median	1.2391	1.3073	NaN	1	0	Median	703720000	327370000	376350000	259570000	127790000	131780000	0	0	0	316290000	136680000	179610000	127850000	62895000	64959000	14450	2993	13707	87237;87238;87239	117847;117848;117849	117848			2	
EVLAWMILHSLYQAR	0	Oxidation (M)	1844.9607	0.96072473	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			90.777	85.057	3	0.023076	48385	160513_QHF_FH_JSI10Kac_6	37.177	24.659			0.76656	0.8981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76656	0.8981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45703000	24841000	20863000	0	0	0	45703000	24841000	20863000	0	0	0	0	0	0	14451	2993	13707	87240	117850	117850			0	
EVLCHLIECNK	1	Unmodified	1413.6745	0.67445547	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	6									4			2	43.402	42.417	2;3	0.0043769	37799	160511_QHF_FH_JSI9i_1	57.047	8.2511			0.80736	0.83738	109.59	5	1	Median	0.66012	0.53951	152.26	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85445	0.89562	9.5083	2	0	Median	2072200000	980950000	1091200000	1175300000	478470000	696790000	0	0	0	0	0	0	896900000	502490000	394410000	14452	4039	13708	87241;87242;87243;87244;87245;87246	117851;117852;117853;117854;117855;117856	117856			6	
EVLDYSTPTTNGTPEAALSEDINLIR	0	Unmodified	2818.3872	0.38724804	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	99.464	99.328	2;3	1.4647E-10	89886	160511_QHF_FH_JSI10i_1	78.285	71.848			1.3106	1.2398	18.667	4	1	Median	1.3077	1.0611	NaN	1	0	Median	1.3586	1.6102	NaN	1	0	Median	1.1572	1.1376	NaN	1	0	Median	1.3135	1.3511	NaN	1	1	Median	162960000	66332000	96628000	20905000	9782800	11122000	62780000	26554000	36226000	44815000	20127000	24688000	34460000	9867800	24592000	14453	899	13709	87247;87248;87249;87250;87251	117857;117858;117859;117860;117861;117862;117863;117864	117863			8	
EVLEALGEVMVSRPRE	0	Unmodified	1812.9404	0.94038322	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			75.86	74.756	3	0.0002489	62879	160511_QHF_FH_JSI10i_3	67.605	52.677			0.86923	0.85732	15.077	2	1	Median	0.91808	0.77062	NaN	1	0	Median	0.82298	0.95377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142870000	72877000	69992000	73246000	36948000	36297000	69623000	35929000	33694000	0	0	0	0	0	0	14454	3634	13710	87252;87253	117865;117866	117865			2	
EVLEDFAEDGEK	1	Unmodified	1379.6093	0.60925548	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	50.267	49.64	2	0.00030417	44026	160511_QHF_FH_JSI9i_1	88.596	80.064			1.941	1.8971	19.374	5	4	Median	2.2296	1.8178	NaN	1	0	Median	1.3408	1.5596	27.707	2	2	Median	2.0888	2.0442	NaN	1	1	Median	1.941	2.0434	NaN	1	1	Median	721630000	284140000	437490000	132460000	33835000	98629000	307630000	147010000	160620000	172240000	53720000	118520000	109300000	49569000	59729000	14455	409	13711	87254;87255;87256;87257;87258	117867;117868;117869;117870;117871	117871			5	
EVLEGLEYLHK	1	Unmodified	1328.6976	0.69761697	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.042	61.133	3	4.0671E-10	53119	160511_QHF_FH_JSI11i_2	133.07	119.39			0.92863	0.97665	2.4948	4	0	Median	1.0983	0.95731	NaN	1	0	Median	0.79557	0.99638	NaN	1	0	Median	1.0166	1.0014	NaN	1	0	Median	0.84824	0.9563	NaN	1	0	Median	367920000	196400000	171530000	57859000	30209000	27650000	95361000	56811000	38550000	146010000	68274000	77735000	68691000	41101000	27590000	14456	721	13712	87259;87260;87261;87262	117872;117873;117874;117875;117876;117877;117878	117876			6	
EVLEKLIEK	2	Acetyl (K)	1141.6594	0.65944055	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			74.584	64.006	2	0.017797	34067	160513_QHF_FH_JSI10Kac_4	64.297	22.188			4.0593	4.7573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.0593	4.7573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3030300	460790	2569500	0	0	0	3030300	460790	2569500	0	0	0	0	0	0	14457	445	13713	87263	117879	117879	228		1	
EVLEKQPVLSQTEAR	1	Acetyl (K)	1767.9367	0.93667805	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		63.341	53.728	2	0.0012497	28024	160513_QHF_FH_JSI11Kac_3	79.492	56.116			0.29461	0.27892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29461	0.27892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2433600	1883000	550650	0	0	0	0	0	0	2433600	1883000	550650	0	0	0	14458	1301	13714	87264	117880	117880	1240		1	
EVLEQVER	0	Unmodified	1000.5189	0.51892433	884;845	P06241;P07947	FYN;YES1	Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	24.464	24.12	2	0.0079915	20986	160511_QHF_FH_JSI11i_1	67.897	6.987			0.88351	0.88531	1.9595	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88581	0.87313	NaN	1	1	Median	0.88122	0.89766	NaN	1	1	Median	364750000	224960000	139790000	0	0	0	0	0	0	179270000	105130000	74145000	185480000	119830000	65648000	14459	845;884	13715	87265;87266	117881;117882	117881			2	
EVLEYLGNPANYPVSIR	0	Unmodified	1932.9945	0.99452728	5506	Q9Y296	TRAPPC4	Trafficking protein particle complex subunit 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.608	87.655	2	0.0069602	75660	160511_QHF_FH_JSI12i_2	70.412	47.938			1.0307	1.1015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0307	1.1015	NaN	1	1	Median	12829000	5812000	7017500	0	0	0	0	0	0	0	0	0	12829000	5812000	7017500	14460	5506	13716	87267	117883	117883			1	
EVLEYNAIGGK	1	Unmodified	1191.6136	0.61355299	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	3.8		1				3	3	2		2	3	2	2	53.264	44.313	2	1.0087E-05	38993	160511_QHF_FH_JSI10i_2	126.49	97.54			0.78762	0.84351	22.697	8	2	Median	1.7243	1.4334	NaN	1	1	Median	0.55792	0.6801	22.614	3	1	Plateau	0.84097	0.82354	4.7657	2	0	Median	0.75352	0.8245	1.8437	2	0	Median	214190000	121370000	92822000	1752900	609880	1143000	162950000	97403000	65550000	13065000	6479600	6585400	36418000	16874000	19544000	14461	1051	13717	87268;87269;87270;87271;87272;87273;87274;87275;87276	117884;117885;117886;117887;117888;117889;117890;117891;117892;117893;117894;117895;117896;117897	117897			14	
EVLEYNAIGGKYNR	1	Acetyl (K)	1666.8315	0.83148469	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	14.6	0.49							4	6		2	4		4	67.088	56.399	2;3	3.2036E-11	30560	160513_QHF_FH_JSI10Kac_4	119.39	110.1			0.87132	0.92737	14.264	10	0	Median	1.0816	0.88234	21.011	2	0	Median	0.82947	0.9896	15.168	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85833	0.91858	11.28	4	0	Median	74860000	39160000	35700000	5403300	2735200	2668100	36601000	18478000	18123000	0	0	0	32856000	17947000	14909000	14462	1051	13718	87277;87278;87279;87280;87281;87282;87283;87284;87285;87286	117898;117899;117900;117901;117902;117903;117904;117905;117906;117907;117908	117902	882		10	
EVLFGVTSWGDGCGEPGKPGVYTR	1	Unmodified	2567.2115	0.2114727	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		77.055	77.055	3	5.6604E-07	68837	160511_QHF_FH_JSI11i_3	75.646	68.286			0.85007	0.81018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85007	0.81018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36691000	20146000	16544000	0	0	0	0	0	0	36691000	20146000	16544000	0	0	0	14463	950	13719	87287	117909	117909			0	
EVLGSATR	0	Unmodified	831.44503	0.4450311	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	1	2		11.742	11.446	2	0.03924	9162	160511_QHF_FH_JSI11i_1	39.646	9.8394			0.8523	0.90256	28.689	4	1	Median	0.69784	0.59078	NaN	1	1	Median	0.65729	0.77369	NaN	1	0	Median	1.0972	1.0692	2.1721	2	0	Median	NaN	NaN	NaN	0	0	Median	261220000	157800000	103420000	50784000	29363000	21421000	68345000	43668000	24677000	142090000	84774000	57319000	0	0	0	14464	2728	13720	87288;87289;87290;87291	117910;117911	117910			2	
EVLHALKEK	2	Acetyl (K)	1107.6288	0.62880913	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.094	30.55	2	0.035809	16872	160513_QHF_FH_JSI11Kac_6	56.258	32.286			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1386100	1386100	0	0	0	0	0	0	0	1386100	1386100	0	0	0	0	14465	3797	13721	87292	117912	117912			1	
EVLHELYK	1	Unmodified	1029.5495	0.54949617	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.419	31.096	3	0.0026376	26251	160511_QHF_FH_JSI12i_2	54.416	24.162			1.1377	1.2064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1377	1.2064	NaN	1	0	Median	23966000	13987000	9978300	0	0	0	0	0	0	0	0	0	23966000	13987000	9978300	14466	1190	13722	87293	117913	117913			1	
EVLHGNQR	0	Unmodified	951.48863	0.48862725	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.23		8	7					4	4	5	6	7	5	5.236	2.1051	2;3	0.00015015	2641	160511_QHF_FH_JSI9i_2	89.752	74.137			0.92258	0.94429	17.299	23	2	Median	1.114	0.96934	13.843	5	0	Median	0.88749	1.0553	17.546	6	0	Median	0.92258	0.9062	18.28	7	2	Median	0.71597	0.80107	16.389	5	0	Median	17913000000	9377400000	8535800000	3285800000	1498200000	1787600000	3586200000	1873800000	1712400000	7693500000	3989300000	3704300000	3347600000	2016200000	1331400000	14467	2036	13723	87294;87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310;87311;87312;87313;87314;87315;87316	117914;117915;117916;117917;117918;117919;117920;117921;117922;117923;117924;117925;117926;117927;117928;117929;117930;117931;117932;117933;117934;117935;117936;117937;117938;117939;117940	117924			27	
EVLHGNQRK	1	Unmodified	1079.5836	0.58359027	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	3	1		4.6597	4.2663	2;3	2.3833E-06	2138	160511_QHF_FH_JSI9i_3	137.88	94.637			1.1029	1.0617	11.07	7	2	Median	1.5366	1.2058	4.9102	3	1	Plateau	0.76834	0.88929	9.1699	3	1	Plateau	1.1029	1.0155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4258200000	1984400000	2273800000	2242800000	825100000	1417700000	1860800000	1057700000	803180000	154570000	101630000	52944000	0	0	0	14468	2036	13724	87317;87318;87319;87320;87321;87322;87323	117941;117942;117943;117944;117945;117946;117947;117948;117949;117950;117951;117952	117949			12	
EVLHKFTVDLPK	2	Acetyl (K)	1466.8133	0.81331543	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.038	66.402	3	0.0067948	35334	160513_QHF_FH_JSI11Kac_5	53.448	40.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2847400	2847400	0	0	0	0	0	0	0	2847400	2847400	0	0	0	0	14469	2010	13725	87324	117953	117953	2039		1	
EVLHNQLLLQTQLVDQLQQQEAQGK	1	Unmodified	2900.5356	0.53558403	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	3	2	88.064	87.603	3	1.5463E-35	76040	160511_QHF_FH_JSI12i_3	181.81	175.74			0.8764	0.93539	17.932	9	6	Median	1.0108	0.89043	30.666	2	2	Median	0.82619	1.0216	15.776	2	2	Median	1.0392	0.93539	14.712	3	2	Plateau	0.93706	1.0166	7.1911	2	0	Median	278520000	146300000	132220000	33518000	16910000	16608000	57251000	32055000	25196000	95972000	47392000	48580000	91778000	49944000	41834000	14470	2270	13726	87325;87326;87327;87328;87329;87330;87331;87332;87333	117954;117955;117956;117957;117958;117959;117960;117961;117962;117963;117964;117965;117966;117967;117968;117969	117969			16	
EVLHSYLR	0	Unmodified	1015.5451	0.5450795	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	27.06	26.702	2;3	0.0032881	23286	160511_QHF_FH_JSI9i_2	51.066	27.638			0.80616	0.61285	45.653	3	2	Plateau	1.154	0.99264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56317	0.52385	NaN	1	1	Median	1.2728	1.2683	NaN	1	1	Median	213000000	110760000	102240000	49122000	18685000	30437000	0	0	0	103410000	58861000	44545000	60467000	33211000	27256000	14471	2299	13727	87334;87335;87336;87337	117970;117971;117972;117973	117972			4	
EVLIETAK	1	Unmodified	901.51205	0.51204804	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.7	29.427	2	0.025863	25615	160511_QHF_FH_JSI9i_1	52.482	17.674			4.2852	3.5507	NaN	1	1	Median	4.2852	3.5507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38278000	8227200	30051000	38278000	8227200	30051000	0	0	0	0	0	0	0	0	0	14472	2354	13728	87338	117974	117974			1	
EVLKSEETSK	2	Acetyl (K)	1190.603	0.60304789	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	25.794	18.343	2	0.0037233	11347	160513_QHF_FH_JSI11Kac_3	73.985	52.521			0.50369	0.51197	110.22	3	1	Plateau	NaN	NaN	NaN	0	0	Median	3.1239	3.6558	NaN	1	1	Median	0.44125	0.42928	NaN	1	0	Median	0.73423	0.79797	NaN	1	0	Median	18789000	10074000	8715000	0	0	0	4472600	1382800	3089800	7549800	4908700	2641000	6766500	3782300	2984200	14473	1936	13729	87339;87340;87341	117975;117976;117977	117975	1945		3	
EVLLASQK	1	Unmodified	886.51238	0.51238239	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.25	0.433	3	1								1		3		23.596	23.349	2	0.010104	20328	160511_QHF_FH_JSI11i_1	55.37	12.246			0.96791	0.95684	45.736	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96791	0.95684	45.736	2	2	Median	NaN	NaN	NaN	0	0	Median	166390000	85444000	80946000	0	0	0	0	0	0	166390000	85444000	80946000	0	0	0	14474	5586	13730	87342;87343;87344;87345	117978;117979;117980;117981	117979			4	
EVLLEAQDMAVR	0	Unmodified	1372.7021	0.70205043	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				2	1		64.262	60.441	2	3.6415E-05	54774	160511_QHF_FH_JSI10i_1	112.83	73.529			0.83099	0.98158	32.519	3	2	Median	NaN	NaN	NaN	0	0	Median	0.79985	0.93583	6.7501	2	1	Median	1.6806	1.6337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	300920000	135550000	165370000	0	0	0	155960000	85246000	70715000	144960000	50305000	94653000	0	0	0	14475	5074	13731	87346;87347;87348	117982;117983;117984	117984			3	
EVLLEASEETGK	1	Unmodified	1303.6507	0.65072636	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				40.887	39.675	2	0.007852	35146	160511_QHF_FH_JSI9i_1	59.84	38.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16713000	16713000	0	16713000	16713000	0	0	0	0	0	0	0	0	0	0	14476	605	13732	87349	117985	117985			1	
EVLLEVQK	1	Unmodified	956.55425	0.5542472	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	42.693	42.173	2	0.0064048	38362	160511_QHF_FH_JSI12i_1	71.501	17.344			0.36056	0.39934	22.487	2	2	Median	NaN	NaN	NaN	0	0	Median	0.39402	0.46816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32995	0.34063	NaN	1	1	Median	91290000	61756000	29534000	0	0	0	43343000	28366000	14977000	0	0	0	47947000	33390000	14557000	14477	5435	13733	87350;87351	117986;117987	117986			2	
EVLLFPAMKPEDK	2	Unmodified	1515.8007	0.80070184	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		69.35	68.751	3	0.030393	60210	160511_QHF_FH_JSI11i_2	36.993	18.398			0.77101	0.77783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77101	0.77783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128690000	72407000	56279000	0	0	0	0	0	0	128690000	72407000	56279000	0	0	0	14478	2614	13734	87352	117988	117988			1	
EVLLFPAMKPEDKK	3	Oxidation (M)	1659.8906	0.89057948	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	1	2			By MS/MS	By MS/MS	3	0			4									2	2	45.305	45.184	3	0.0016839	38606	160511_QHF_FH_JSI12i_3	73.887	40.683			0.88341	0.84247	12.29	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82797	0.77235	NaN	1	1	Median	0.94256	0.91896	NaN	1	1	Median	172990000	82786000	90208000	0	0	0	0	0	0	45131000	27408000	17723000	127860000	55378000	72486000	14479	2614	13735	87353;87354;87355;87356	117989;117990;117991;117992	117991		2052	4	
EVLLFPAMKPEDKK	3	Unmodified	1643.8957	0.89566485	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							2	3	5	4	59.179	58.656	2;3;4	9.1847E-16	50128	160511_QHF_FH_JSI12i_3	135.6	112.22			0.75568	0.73256	17.346	10	10	Median	0.97284	0.82601	18.249	2	2	Median	0.58286	0.7151	2.4863	2	2	Median	0.73832	0.61165	26.268	4	4	Linear	0.77979	0.78482	2.5519	2	2	Median	2848900000	1373800000	1475200000	151860000	72509000	79355000	245510000	138780000	106730000	989910000	428080000	561830000	1461600000	734380000	727250000	14480	2614	13735	87357;87358;87359;87360;87361;87362;87363;87364;87365;87366;87367;87368;87369;87370	117993;117994;117995;117996;117997;117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011	118010			19	
EVLLLMQALNTLSTPEEK	1	Unmodified	2028.0813	0.081293374	5011	Q9NUQ3;Q9BZA5	TXLNG;TXLNGY	Gamma-taxilin;Putative gamma-taxilin 2	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.37	102.23	3	3.1299E-07	90075	160511_QHF_FH_JSI11i_2	100.77	91.95			1.6011	1.6257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6011	1.6257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114780000	69079000	45697000	0	0	0	0	0	0	79630000	33933000	45697000	35145000	35145000	0	14481	5011	13736	87371;87372	118012;118013	118013			2	
EVLLPEVGAK	1	Unmodified	1053.607	0.60701105	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	56.443	55.701	2	0.0051791	50100	160511_QHF_FH_JSI10i_1	56.432	30.872			1.0468	1.0243	14.471	3	3	Plateau	1.0797	0.87714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0468	1.0243	NaN	1	1	Median	1.1463	1.1713	NaN	1	1	Median	231370000	137320000	94056000	81823000	52217000	29606000	0	0	0	83762000	46820000	36942000	65789000	38281000	27508000	14482	2466	13737	87373;87374;87375;87376;87377	118014;118015;118016;118017;118018	118017			5	
EVLLVALGSR	0	Unmodified	1055.6339	0.63389451	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		76.852	66.217	2	0.011952	35250	160513_QHF_FH_JSI11Kac_5	64.04	20.232			0.76925	0.75552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76925	0.75552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5178800	2355100	2823700	0	0	0	0	0	0	5178800	2355100	2823700	0	0	0	14483	2297	13738	87378	118019	118019			1	
EVLNAVK	1	Unmodified	771.44905	0.44905385	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.293	18.813	2	0.012945	16332	160511_QHF_FH_JSI12i_1	72.138	19.455			3.1944	3.2679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1944	3.2679	NaN	1	1	Median	65491000	25905000	39586000	0	0	0	0	0	0	0	0	0	65491000	25905000	39586000	14484	3115	13739	87379	118020	118020			1	
EVLNEEDEVQPNGK	1	Unmodified	1598.7424	0.74239491	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	3	2	32.125	30.377	2;3	2.9298E-135	27125	160511_QHF_FH_JSI11i_1	284.1	229.04			1.1731	1.1199	20.616	7	0	Median	1.2432	1.0124	NaN	1	0	Median	1.1731	1.3823	NaN	1	0	Median	1.1176	1.0865	30.316	3	0	Median	1.1733	1.2313	13.413	2	0	Median	698870000	333570000	365300000	134600000	67133000	67470000	145320000	70259000	75063000	214170000	92160000	122010000	204780000	104010000	100760000	14485	707	13740	87380;87381;87382;87383;87384;87385;87386	118021;118022;118023;118024;118025;118026;118027;118028;118029;118030;118031;118032	118021			11	
EVLNMLK	1	Unmodified	845.46807	0.46807473	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4									2	3	1	46.818	46.118	2	0.011144	39698	160511_QHF_FH_JSI11i_2	78.616	9.2322			0.52663	0.56747	99.475	6	5	Median	NaN	NaN	NaN	0	0	Median	0.25937	0.30406	77.246	2	2	Median	0.64094	0.61337	116.41	3	3	Median	0.71567	0.76791	NaN	1	0	Median	375780000	200190000	175600000	0	0	0	85483000	57402000	28081000	208310000	93605000	114700000	81991000	49180000	32812000	14486	3903	13741	87387;87388;87389;87390;87391;87392	118033;118034;118035;118036;118037;118038	118037			6	
EVLPALENNK	1	Unmodified	1125.603	0.60298831	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	2	2	3	41.785	40.852	2	5.5575E-09	37002	160511_QHF_FH_JSI11i_1	125.82	57.92			1.0451	0.94999	29.104	9	5	Median	1.1674	0.94999	24.831	3	2	Median	0.70476	0.83546	17.209	2	0	Median	1.0679	1.049	NaN	1	1	Median	1.0451	1.1099	45.646	3	2	Median	1650600000	834240000	816410000	361710000	161600000	200110000	426710000	239690000	187020000	394880000	199530000	195350000	467340000	233420000	233930000	14487	5313	13742	87393;87394;87395;87396;87397;87398;87399;87400;87401;87402	118039;118040;118041;118042;118043;118044;118045;118046;118047;118048;118049;118050;118051;118052;118053;118054	118041			16	
EVLPHVPLGVIQR	0	Unmodified	1455.8562	0.8561833	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	68.619	67.872	2;3	2.5688E-05	60188	160511_QHF_FH_JSI10i_2	74.237	60.558			0.97328	0.99175	17.988	9	1	Median	1.2813	1.0669	7.3821	2	0	Median	0.87738	1.0201	26.489	3	1	Median	0.93233	0.87738	6.4928	2	0	Median	0.877	0.89485	14.54	2	0	Median	932830000	485490000	447350000	133430000	56789000	76642000	255260000	137770000	117490000	256410000	136940000	119460000	287740000	153980000	133750000	14488	5709	13743	87403;87404;87405;87406;87407;87408;87409;87410;87411	118055;118056;118057;118058;118059;118060;118061;118062	118061			8	
EVLPLAFLGMHEIADEEK	1	Unmodified	2040.0238	0.023778495	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	101.16	101.06	3	3.2083E-07	86884	160511_QHF_FH_JSI12i_2	99.86	77.706			1.0662	1.0869	6.8284	4	0	Median	1.249	1.069	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9944	0.98608	NaN	1	0	Median	1.0662	1.1322	3.4136	2	0	Median	689110000	335830000	353290000	119520000	55820000	63705000	0	0	0	210820000	110420000	100410000	358770000	169590000	189180000	14489	2997	13744	87412;87413;87414;87415	118063;118064;118065	118063			1	
EVLPLMAAAGSHLLFVLHGLEHLNLDFR	0	Unmodified	3111.6692	0.66918116	3329	Q86UT6	NLRX1	NLR family member X1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.533	93.812	5	0.034788	55084	160513_QHF_FH_JSI10Kac_6	23.951	17.724			0.89589	1.0368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89589	1.0368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54680000	28358000	26322000	0	0	0	54680000	28358000	26322000	0	0	0	0	0	0	14490	3329	13745	87416	118066	118066			0	
EVLPSTR	0	Unmodified	800.43922	0.43921744	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.25	0.433	3	1								1		1	2	16.439	15.787	2	0.020186	12797	160511_QHF_FH_JSI12i_2	57.177	10.807			0.80672	0.76226	12.527	4	0	Median	0.97979	0.7877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77456	0.73765	NaN	1	0	Median	0.75358	0.81483	20.119	2	0	Median	964590000	531180000	433410000	259050000	129660000	129400000	0	0	0	319620000	204710000	114910000	385910000	196810000	189100000	14491	3213	13746	87417;87418;87419;87420	118067;118068	118068			2	
EVLQALEELAVNYDQK	1	Unmodified	1860.9469	0.94690838	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		101.15	101.05	3	0.0012412	88844	160511_QHF_FH_JSI9i_2	60.307	56.445			1.0374	0.98116	15.271	2	2	Median	1.243	1.093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86577	0.88074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	264800000	112930000	151880000	129690000	49521000	80167000	0	0	0	135120000	63406000	71710000	0	0	0	14492	1400	13747	87421;87422	118069;118070	118069			2	
EVLQNHHSK	1	Unmodified	1090.552	0.55195579	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.5242	4.6167	2	0.049448	2062	160511_QHF_FH_JSI12i_3	44.349	11.994			0.18935	0.19885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18935	0.19885	NaN	1	1	Median	18122000	15460000	2662500	0	0	0	0	0	0	0	0	0	18122000	15460000	2662500	14493	5369	13748	87423	118071	118071			1	
EVLQNQLGIRPPTR	0	Unmodified	1619.9107	0.91073807	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			49.919	48.333	3	7.7028E-05	39594	160511_QHF_FH_JSI9i_3	92.856	54.835			0.89154	0.8659	9.8066	2	1	Median	1.1445	0.92808	NaN	1	0	Median	0.69447	0.80789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125290000	50995000	74300000	82294000	30138000	52156000	43001000	20857000	22143000	0	0	0	0	0	0	14494	3290	13749	87424;87425	118072;118073;118074	118073			3	
EVLSFHR	0	Unmodified	886.4661	0.4661009	3687	Q8TB03	CXorf38	Uncharacterized protein CXorf38	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	3	0			3							1		1	1	25.325	24.865	3	0.0022899	21094	160511_QHF_FH_JSI11i_3	71.134	46.935			1.0653	1.0162	8.6298	3	0	Median	1.0653	0.88441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0855	1.0162	NaN	1	0	Median	1.0397	1.0359	NaN	1	0	Median	163060000	74645000	88420000	35257000	11922000	23335000	0	0	0	66621000	31957000	34664000	61187000	30767000	30420000	14495	3687	13750	87426;87427;87428	118075	118075			1	
EVLSLLQEK	1	Unmodified	1057.6019	0.60192568	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		59.889	59.384	2	0.00072962	51606	160511_QHF_FH_JSI11i_2	86.136	68.227			1.0609	1.0652	90.465	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0609	1.0652	90.465	2	2	Median	NaN	NaN	NaN	0	0	Median	131310000	71100000	60205000	0	0	0	0	0	0	131310000	71100000	60205000	0	0	0	14496	3141	13751	87429;87430;87431	118076;118077;118078	118078			3	
EVLSMDDEIQK	1	Unmodified	1305.6122	0.61223236	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.695	47.015	2	1.69E-18	42434	160511_QHF_FH_JSI11i_1	166.34	134.58			1.0368	1.0012	10.086	4	0	Median	1.1584	0.94333	NaN	1	0	Median	0.97782	1.1606	NaN	1	0	Median	1.0993	1.0626	NaN	1	0	Median	0.8776	0.94335	NaN	1	0	Median	1773800000	922900000	850950000	434180000	197600000	236580000	470300000	283000000	187300000	486970000	263290000	223680000	382390000	179010000	203390000	14497	2242	13752	87432;87433;87434;87435	118079;118080;118081;118082;118083;118084;118085;118086	118080			8	
EVLSMDDEIQK	1	Oxidation (M)	1321.6071	0.60714699	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	38.365	29.789	2	0.008914	16894	160513_QHF_FH_JSI12Kac_3	52.278	37.018			1.2921	1.4188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2921	1.4188	NaN	1	0	Median	2438500	1156700	1281800	0	0	0	0	0	0	0	0	0	2438500	1156700	1281800	14498	2242	13752	87436	118087;118088	118088		1855	2	
EVLSMHQILLYLLR	0	Unmodified	1726.9804	0.98039754	4963	Q9NRR4	DROSHA	Ribonuclease 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	96.733	88.862	2;3	5.5602E-47	52556	160513_QHF_FH_JSI10Kac_6	202.13	144.32			1.0715	1.1289	14.304	5	1	Median	1.3415	1.1289	NaN	1	0	Median	0.74809	0.88393	4.9647	2	1	Median	1.2185	1.1494	NaN	1	0	Median	1.0715	1.1501	NaN	1	0	Median	816070000	420520000	395550000	128260000	55554000	72702000	434980000	257840000	177150000	159330000	70470000	88859000	93500000	36659000	56841000	14499	4963	13753	87437;87438;87439;87440;87441;87442	118089;118090;118091;118092;118093;118094;118095;118096	118094			8	
EVLTDNNLGQR	0	Unmodified	1257.6313	0.63132832	1489	P39880	CUX1	Homeobox protein cut-like 1	no	no	0	0	0	0				By MS/MS	1	0	2												2	28.969	28.406	2	0.0042787	25410	160511_QHF_FH_JSI12i_1	65.347	37.575			1.0418	1.1032	52.965	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0418	1.1032	52.965	2	2	Median	85587000	45266000	40322000	0	0	0	0	0	0	0	0	0	85587000	45266000	40322000	14500	1489	13754	87443;87444	118097;118098	118098			2	
EVLTEDK	1	Unmodified	832.41781	0.4178133	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	14.099	9.3567	2	5.6712E-05	5400	160513_QHF_FH_JSI9Kac_3	125.25	58.217			0.91081	0.90333	78.417	7	4	Median	2.5773	2.1324	NaN	1	0	Median	0.79259	0.9273	96.693	2	2	Median	0.52622	0.51242	80.178	2	1	Median	1.194	1.2911	71.356	2	1	Median	4490500000	2442300000	2048300000	55782000	12022000	43759000	2000100000	1083500000	916600000	1065300000	749320000	315960000	1369400000	597390000	771970000	14501	1208	13755	87445;87446;87447;87448;87449;87450;87451	118099;118100;118101;118102;118103;118104;118105	118104			7	
EVLTNPAK	1	Unmodified	870.48108	0.48108226	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.507	17.024	2	0.018546	14365	160511_QHF_FH_JSI10i_1	47.574	29.539			0.82088	0.9112	22.709	4	0	Median	0.78954	0.63803	NaN	1	0	Median	0.80654	0.94156	NaN	1	0	Median	1.1271	1.0932	NaN	1	0	Median	0.83548	0.88182	NaN	1	0	Median	229420000	118050000	111380000	51316000	25352000	25964000	56810000	33283000	23526000	59738000	28439000	31300000	61561000	30975000	30585000	14502	3230	13756	87452;87453;87454;87455	118106;118107	118107			2	
EVMAEFSDAVTEETLK	1	Unmodified	1797.8342	0.83424639	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				78.983	78.111	2	0.026551	69458	160511_QHF_FH_JSI9i_1	48.044	32.18			0.86387	0.69464	NaN	1	1	Median	0.86387	0.69464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20008000	12781000	7227500	20008000	12781000	7227500	0	0	0	0	0	0	0	0	0	14503	3536	13757	87456	118108	118108			1	
EVMFLNELEEILDVIEPSEFSK	1	Unmodified	2609.2822	0.28223761	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				103.33	94.129	3	0.058531	54489	160513_QHF_FH_JSI9Kac_6	29.269	1.7866			3.8283	3.2723	NaN	1	1	Median	3.8283	3.2723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21882000	3848300	18034000	21882000	3848300	18034000	0	0	0	0	0	0	0	0	0	14504	2570	13758	87457	118109	118109			1	
EVMFTEEDVK	1	Unmodified	1225.5537	0.55365485	2669;1755	Q15418;P51812;Q15349	RPS6KA1;RPS6KA3;RPS6KA2	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	46.5	45.824	2	6.6305E-14	40730	160511_QHF_FH_JSI9i_1	155.84	107.28			1.0166	1.0265	12.206	4	1	Median	1.0437	0.84651	NaN	1	0	Median	0.94603	1.0979	NaN	1	0	Median	0.99789	0.96772	NaN	1	1	Median	1.0357	1.0888	NaN	1	0	Median	1125000000	542160000	582820000	228040000	98224000	129820000	309170000	160510000	148670000	288060000	137330000	150730000	299700000	146100000	153610000	14505	2669;1755	13759	87458;87459;87460;87461;87462	118110;118111;118112;118113;118114;118115;118116;118117;118118	118117			9	
EVMFTEEDVK	1	Oxidation (M)	1241.5486	0.54856948	2669;1755	Q15418;P51812;Q15349	RPS6KA1;RPS6KA3;RPS6KA2	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2	no	no	0	0	1	0			By MS/MS		13	0						1						1		47.346	37.96	2	0.010945	21150	160513_QHF_FH_JSI11Kac_3	50.805	36.802			1.8858	1.8286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8858	1.8286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1426500	559610	866940	0	0	0	0	0	0	1426500	559610	866940	0	0	0	14506	2669;1755	13759	87463	118119	118119		1434	1	
EVMILITGAHK	1	Unmodified	1210.6744	0.67437911	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	14.1	4.59		1						1	6	1	1	2	4	62.285	53.517	2;3	2.5794E-07	27963	160513_QHF_FH_JSI12Kac_6	111.06	103.13			0.54512	0.55482	45.556	8	6	Median	0.6962	0.59503	NaN	1	1	Median	0.6115	0.70792	NaN	1	0	Median	0.62098	0.60373	70.086	2	2	Median	0.44515	0.47708	55.34	4	3	Median	186160000	115700000	70467000	17781000	11242000	6538400	1880600	1250400	630180	53252000	29128000	24124000	113250000	74076000	39174000	14507	1596;3725	13760	87464;87465;87466;87467;87468;87469;87470;87471	118120;118121;118122;118123;118124;118125;118126	118125			6	
EVMILITGAHK	1	Oxidation (M)	1226.6693	0.66929373	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	4	3	2	51.436	42.195	2;3	2.7692E-10	22959	160513_QHF_FH_JSI11Kac_6	123.88	96.141			0.84882	0.86603	35.076	11	9	Median	0.98203	0.85504	20.416	2	0	Median	0.60351	0.71237	37.3	4	4	Median	0.76108	0.75297	32.69	3	3	Median	1.2412	1.3515	17.326	2	2	Median	202240000	128300000	73934000	45378000	22642000	22737000	93643000	67576000	26067000	52738000	32779000	19958000	10479000	5306900	5172000	14508	1596;3725	13760	87472;87473;87474;87475;87476;87477;87478;87479;87480;87481;87482	118127;118128;118129;118130;118131;118132;118133;118134;118135;118136;118137;118138;118139	118129		1267	13	
EVMLDAALALAAEISSK	1	Unmodified	1730.9124	0.91243713	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								2	1	1	102.9	102.79	3	5.5146E-06	90570	160511_QHF_FH_JSI11i_2	96.666	75.432			0.84076	0.97539	12.691	4	3	Median	NaN	NaN	NaN	0	0	Median	0.748	0.91246	3.3554	2	1	Median	1.189	1.1895	NaN	1	1	Median	0.92018	1.0182	NaN	1	1	Median	101330000	56377000	44951000	0	0	0	25033000	15768000	9265400	45627000	21177000	24450000	30668000	19432000	11236000	14509	2340	13761	87483;87484;87485;87486	118140;118141;118142;118143	118142			4	
EVMLILIR	0	Unmodified	985.59942	0.59942325	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	2	1	3	2	81.969	78.158	2	0.00024028	71485	160511_QHF_FH_JSI9i_2	117.17	106.3			1.0047	1.014	20.297	8	0	Median	1.0674	0.91456	33.339	2	0	Median	0.74561	0.9116	NaN	1	0	Median	1.029	0.96095	18.204	3	0	Median	1.0986	1.1916	15.222	2	0	Median	297140000	152490000	144650000	75602000	40412000	35190000	32210000	17604000	14606000	127910000	67934000	59974000	61422000	26537000	34885000	14510	542	13762	87487;87488;87489;87490;87491;87492;87493;87494	118144;118145;118146;118147;118148;118149;118150;118151;118152;118153;118154;118155;118156	118149			13	
EVMLILIR	0	Oxidation (M)	1001.5943	0.59433788	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.599							1	5	2	2	4	1	1	77.486	67.742	2	0.00021054	33233	160513_QHF_FH_JSI12Kac_5	117.17	94.15			0.91589	1.0234	37.941	8	0	Median	1.7984	1.5487	56.969	2	0	Median	0.73954	0.86554	24.434	4	0	Median	1.0514	1.0452	NaN	1	0	Median	0.93081	1.0117	NaN	1	0	Median	152510000	72535000	79975000	34976000	13375000	21601000	67863000	36830000	31033000	18146000	6745300	11401000	31524000	15585000	15939000	14511	542	13762	87495;87496;87497;87498;87499;87500;87501;87502	118157;118158;118159;118160;118161	118159		200	5	
EVMLQNGETPK	1	Unmodified	1244.6071	0.60708741	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	28.154	27.565	2	4.9567E-14	23949	160511_QHF_FH_JSI9i_1	154.56	111.69			0.88036	0.86103	13.831	4	3	Median	0.8672	0.71988	NaN	1	0	Median	0.72555	0.86521	NaN	1	1	Median	0.89372	0.85687	NaN	1	1	Median	0.98534	1.0097	NaN	1	1	Median	454800000	262370000	192430000	119220000	65207000	54015000	132010000	78776000	53237000	105710000	62786000	42928000	97853000	55603000	42250000	14512	2578	13763	87503;87504;87505;87506;87507	118162;118163;118164;118165;118166;118167	118166			6	
EVMLVGIGDK	1	Unmodified	1059.5634	0.56343168	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.16	4	4	2			3	5	4		5	7	5	5	63.258	57.607	2	2.5634E-09	52405	160511_QHF_FH_JSI12i_1	128.27	102.38			0.92516	0.93057	46.246	20	6	Median	1.2275	0.98712	17.109	4	1	Median	0.72765	0.85939	50.534	7	4	Median	0.93408	0.93057	49.467	4	0	Median	0.89712	1.0277	63.897	5	1	Median	3106400000	1616800000	1489600000	642150000	312370000	329780000	829950000	450170000	379790000	895740000	490900000	404840000	738580000	363350000	375230000	14513	1454	13764	87508;87509;87510;87511;87512;87513;87514;87515;87516;87517;87518;87519;87520;87521;87522;87523;87524;87525;87526;87527;87528;87529	118168;118169;118170;118171;118172;118173;118174;118175;118176;118177;118178;118179;118180;118181;118182;118183;118184;118185;118186;118187;118188;118189;118190;118191;118192;118193;118194;118195;118196;118197;118198;118199;118200	118175			33	
EVMLVGIGDK	1	Oxidation (M)	1075.5583	0.5583463	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By MS/MS	13	0						2					1		1	58.953	49.645	2	0.0034659	25617	160513_QHF_FH_JSI10Kac_3	63.816	44.03			0.93085	1.0461	15.372	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99576	1.1662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87018	0.93834	NaN	1	0	Median	6117600	3149000	2968500	0	0	0	4410200	2293500	2116700	0	0	0	1707400	855590	851790	14514	1454	13764	87530;87531	118201;118202;118203	118203		1124	3	
EVMNADDPDLQRPDEEAIK	1	Unmodified	2184.0005	0.0004768701	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.715	47.036	3	3.0063E-11	42234	160511_QHF_FH_JSI10i_1	138.3	128.55			0.96446	0.98461	8.8443	4	0	Median	1.2351	1.0276	NaN	1	0	Median	0.82203	0.94337	NaN	1	0	Median	1.1056	1.0756	NaN	1	0	Median	0.84135	0.882	NaN	1	0	Median	986610000	545570000	441040000	165470000	76978000	88492000	324410000	192790000	131620000	295950000	165110000	130840000	200780000	110700000	90080000	14515	2443	13765	87532;87533;87534;87535	118204;118205;118206;118207;118208;118209;118210	118208			7	
EVMPLLLAYLK	1	Unmodified	1288.7465	0.74648142	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	1	3	2	3	100.52	98.778	2	2.5487E-09	89620	160511_QHF_FH_JSI11i_2	129.1	108.4			1.0783	1.0915	27.11	9	1	Median	1.0278	0.87128	NaN	1	0	Median	0.81503	1.0041	34.577	3	1	Plateau	1.0187	0.98611	14.355	2	0	Median	0.91708	1.035	21.237	3	0	Plateau	1240600000	629440000	611180000	162230000	80630000	81596000	351160000	184520000	166640000	340170000	162830000	177340000	387060000	201460000	185600000	14516	3741	13766	87536;87537;87538;87539;87540;87541;87542;87543;87544	118211;118212;118213;118214;118215;118216;118217;118218;118219;118220;118221;118222	118217			12	
EVMQDYRDELK	1	Unmodified	1424.6606	0.66057954	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	1			By MS/MS	By matching	2	0		2										1	1	37.512	36.619	3	0.012491	31269	160511_QHF_FH_JSI11i_2	30.336	16.908			0.96292	1.0004	1.7541	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0269	1.0129	NaN	1	0	Median	0.90293	0.98809	NaN	1	0	Median	69692000	32276000	37417000	0	0	0	0	0	0	47440000	21436000	26004000	22253000	10840000	11413000	14517	1542	13767	87545;87546	118223	118223			1	
EVMQEVAQLSQFDEELYK	1	Unmodified	2185.0249	0.024900707	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	3	3	2	98.347	98.181	2;3	9.0045E-31	88848	160511_QHF_FH_JSI10i_1	222.16	200.41			0.95444	0.94924	40.361	11	2	Median	1.0677	0.88094	59.385	3	2	Plateau	0.79181	0.91631	10.81	3	0	Plateau	0.74573	0.72924	21.154	3	0	Median	0.83455	0.87009	30.977	2	0	Median	676450000	348370000	328080000	98515000	36922000	61594000	225310000	110620000	114700000	129640000	77032000	52613000	222980000	123800000	99175000	14518	1667	13768	87547;87548;87549;87550;87551;87552;87553;87554;87555;87556;87557	118224;118225;118226;118227;118228;118229;118230;118231;118232;118233;118234;118235;118236;118237;118238;118239;118240;118241;118242;118243;118244;118245	118237			22	
EVMSDLEESK	1	Unmodified	1165.5173	0.51726935	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.48	30.252	2	0.00066472	27040	160511_QHF_FH_JSI11i_1	85.377	69.715			0.50413	0.49699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50413	0.49699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	179060000	141360000	37701000	0	0	0	0	0	0	179060000	141360000	37701000	0	0	0	14519	2168	13769	87558	118246	118246			1	
EVMSPLQAMSSYTVAGR	0	Unmodified	1825.8703	0.87025474	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.36	83.527	2	7.329E-06	72220	160511_QHF_FH_JSI12i_2	109	91.63			0.93467	0.95915	36.993	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75905	0.73839	NaN	1	1	Median	1.1509	1.2459	NaN	1	1	Median	26647000	12428000	14220000	0	0	0	0	0	0	14065000	8776600	5288700	12582000	3651100	8930800	14520	4551	13770	87559;87560	118247;118248	118247			2	
EVMSTPVTCLR	0	Unmodified	1291.6264	0.62644264	1752	P51798	CLCN7	H(+)/Cl(-) exchange transporter 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.779	47.381	2	0.0030983	40546	160511_QHF_FH_JSI12i_2	65.347	36.26			1.0971	1.2142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0971	1.2142	NaN	1	0	Median	21105000	11187000	9917600	0	0	0	0	0	0	0	0	0	21105000	11187000	9917600	14521	1752	13771	87561	118249;118250	118250			2	
EVMVDDR	0	Unmodified	862.38547	0.38546731	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	14.242	13.863	2	0.0072267	11235	160511_QHF_FH_JSI11i_1	89.55	28.762			0.90183	0.80329	48.05	5	1	Median	0.98977	0.80329	NaN	1	0	Median	0.5336	0.6229	NaN	1	0	Median	0.97664	0.94177	88.764	2	1	Median	0.90183	0.9611	NaN	1	0	Median	1695100000	889480000	805620000	393150000	194570000	198580000	383770000	223510000	160260000	574580000	286610000	287960000	343610000	184790000	158820000	14522	1728	13772	87562;87563;87564;87565;87566	118251;118252;118253	118251			3	
EVMVDDRLVTMQIWDTAGQER	0	Unmodified	2491.1835	0.18354339	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	90.935	90.45	3	2.2988E-09	78402	160511_QHF_FH_JSI12i_3	102.6	88.439			2.0172	2.2081	28.297	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5126	2.5584	NaN	1	0	Median	1.6202	1.8082	28.258	2	1	Median	157940000	61651000	96293000	0	0	0	0	0	0	57359000	23037000	34323000	100580000	38614000	61970000	14523	1728	13773	87567;87568;87569	118254;118255;118256	118256			3	
EVNDLLQENEQLMK	1	Unmodified	1701.8244	0.82435041	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		67.555	67.131	2	5.6576E-06	59564	160511_QHF_FH_JSI9i_1	86.911	69.968			0.98207	0.92917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98207	0.92917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23133000	13279000	9854300	0	0	0	0	0	0	23133000	13279000	9854300	0	0	0	14524	1660	13774	87570;87571	118257;118258	118258			2	
EVNEGIQALSNSEEEK	1	Unmodified	1774.8221	0.8221018	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	44.1	43.441	2	1.8865E-10	39277	160511_QHF_FH_JSI11i_1	150.12	131.85			0.93782	0.96056	34.778	4	2	Median	NaN	NaN	NaN	0	0	Median	0.78654	0.92021	NaN	1	0	Median	1.0338	1.0027	NaN	1	0	Median	1.2267	1.2666	53.168	2	2	Median	159140000	73325000	85816000	10917000	0	10917000	47555000	30721000	16834000	45809000	23628000	22181000	54860000	18975000	35885000	14525	3523	13775	87572;87573;87574;87575;87576	118259;118260;118261;118262;118263;118264;118265	118260			7	
EVNENFAIDLIAEQPVSEVETR	0	Unmodified	2501.2286	0.22856255	514	O75380	NDUFS6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	1	2	100.64	100.56	2;3	2.76E-12	91221	160511_QHF_FH_JSI10i_1	130.56	110.45			1.0705	1.2105	13.725	4	4	Median	NaN	NaN	NaN	0	0	Median	1.1182	1.317	6.9053	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0297	1.0799	11.119	2	2	Median	202960000	94367000	108600000	0	0	0	93808000	43437000	50371000	0	0	0	109160000	50930000	58226000	14526	514	13776	87577;87578;87579;87580;87581;87582	118266;118267;118268;118269;118270;118271	118271			6	
EVNEQTHFASMPR	0	Unmodified	1544.7042	0.70417569	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.526	31.203	2	4.6518E-05	26409	160511_QHF_FH_JSI12i_2	78.324	62.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14527	264	13777	87583	118272	118272			1	
EVNEVIQNPATITR	0	Unmodified	1582.8315	0.83148469	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.289	50.617	2	7.7679E-40	45773	160511_QHF_FH_JSI11i_1	198.74	170.73			0.92323	0.83748	16.372	5	3	Median	0.92323	0.75484	NaN	1	1	Median	0.72214	0.83748	NaN	1	0	Median	1.0787	1.0634	NaN	1	0	Median	0.8804	0.89465	21.19	2	2	Median	470280000	251560000	218720000	91144000	48534000	42609000	103190000	59309000	43880000	101230000	51332000	49898000	174720000	92385000	82334000	14528	5641	13778	87584;87585;87586;87587;87588	118273;118274;118275;118276;118277;118278;118279	118274			7	
EVNEVSQNFQTTK	1	Unmodified	1522.7264	0.72635092	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	31.734	31.162	2	7.919E-07	27820	160511_QHF_FH_JSI10i_1	90.005	66.154			0.16348	0.1725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16348	0.1725	NaN	1	1	Median	141790000	112310000	29479000	0	0	0	0	0	0	0	0	0	141790000	112310000	29479000	14529	4572	13779	87589;87590	118280;118281	118281			2	
EVNFTSELRK	1	Unmodified	1221.6354	0.63535107	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		39.068	39.068	2;3	0.016563	34335	160511_QHF_FH_JSI11i_3	50.034	32.407			1.9777	1.8629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9777	1.8629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59593000	20799000	38794000	0	0	0	0	0	0	59593000	20799000	38794000	0	0	0	14530	5412	13780	87591;87592	118282;118283	118283			2	
EVNLAVQNAK	1	Unmodified	1084.5877	0.58767259	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	5.89	4	1				5	4			1	5	4	4	34.348	28.276	2	0.00011159	24619	160511_QHF_FH_JSI10i_2	84.615	54.002			0.74199	0.8773	49.655	14	8	Median	1.5377	1.2611	NaN	1	0	Median	0.73579	0.89997	45.564	5	3	Median	0.97288	0.95375	48.238	4	2	Median	0.62484	0.66011	64.367	4	3	Median	2172300000	1170600000	1001600000	455170000	207380000	247790000	646980000	389950000	257030000	487010000	243070000	243930000	583090000	330240000	252860000	14531	1645	13781	87593;87594;87595;87596;87597;87598;87599;87600;87601;87602;87603;87604;87605;87606	118284;118285;118286;118287;118288;118289;118290;118291;118292;118293;118294;118295;118296	118296			12	
EVNNESGESQR	0	Unmodified	1247.5378	0.53782187	4925	Q9NQS1	AVEN	Cell death regulator Aven	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	5.067	4.8384	2	2.6086E-09	2722	160511_QHF_FH_JSI12i_1	128.81	89.148			1.2589	1.2869	38.092	3	0	Median	NaN	NaN	NaN	0	0	Median	0.67652	0.80167	NaN	1	0	Median	1.7454	1.7034	NaN	1	0	Median	1.2589	1.2869	NaN	1	0	Median	188240000	88416000	99825000	0	0	0	62704000	38290000	24414000	57960000	23429000	34531000	67577000	26697000	40880000	14532	4925	13782	87607;87608;87609	118297;118298	118298			2	
EVNQALK	1	Unmodified	800.43922	0.43921744	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.275	10.039	2	0.0099712	7832	160511_QHF_FH_JSI10i_1	67.035	29.389			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14533	4255	13783	87610	118299	118299			1	
EVNQDILENTSSVEQELQITTGR	0	Unmodified	2602.2722	0.27221828	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	91.597	91.538	3	0.00016007	83267	160511_QHF_FH_JSI12i_1	51.234	44.51			0.58294	0.65546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58294	0.65546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18177000	11979000	6198000	0	0	0	18177000	11979000	6198000	0	0	0	0	0	0	14534	3819	13784	87611;87612;87613	118300;118301;118302	118300			3	
EVNYIDK	1	Unmodified	879.4338	0.43379771	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	21.179	20.887	2	0.020827	17994	160511_QHF_FH_JSI11i_1	60.436	33.474			0.73727	0.78698	45.35	4	4	Median	NaN	NaN	NaN	0	0	Median	0.96337	1.1385	45.06	2	2	Median	0.77185	0.74816	NaN	1	1	Median	0.5166	0.52783	NaN	1	1	Median	663550000	349520000	314030000	0	0	0	323080000	160360000	162730000	165640000	85989000	79654000	174820000	103170000	71648000	14535	2266	13785	87614;87615;87616;87617	118303;118304;118305;118306	118303			4	
EVPAVPETLK	1	Unmodified	1081.6019	0.60192568	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.93	4	2			1	4	3			2	5	3	4	55.542	49.554	2	1.8593E-07	44575	160511_QHF_FH_JSI11i_1	117.89	63.733			1.0204	1.0361	20.976	14	3	Median	1.2809	1.0782	10.848	2	1	Median	0.88705	1.0616	16.429	5	1	Median	1.1337	1.1033	14.682	3	0	Plateau	0.8556	0.91758	34.552	4	1	Median	9578500000	4848300000	4730200000	2534400000	1117800000	1416600000	2102600000	1163300000	939310000	2585600000	1289900000	1295700000	2356000000	1277300000	1078600000	14536	1138	13786	87618;87619;87620;87621;87622;87623;87624;87625;87626;87627;87628;87629;87630;87631	118307;118308;118309;118310;118311;118312;118313;118314;118315;118316;118317;118318;118319;118320;118321;118322;118323;118324;118325;118326;118327;118328;118329;118330;118331	118308			25	
EVPAVPETLKK	2	Unmodified	1209.6969	0.69688869	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.26	4.8	7	8	7				4	1		3	9	7	8	42.647	40.039	2;3	2.2101E-05	34850	160511_QHF_FH_JSI9i_2	76.522	59.99			1.1083	1.1644	49.222	25	8	Median	1.3622	1.1631	0.15993	2	0	Median	1.0632	1.2806	58.539	8	4	Median	1.0824	1.1003	69.776	7	2	Median	1.0702	1.1401	17.443	8	2	Median	6633600000	3648400000	2985200000	761220000	340930000	420290000	1916400000	1223000000	693370000	2164200000	1233100000	931130000	1791800000	851390000	940400000	14537	1138	13787	87632;87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643;87644;87645;87646;87647;87648;87649;87650;87651;87652;87653;87654;87655;87656;87657;87658	118332;118333;118334;118335;118336;118337;118338;118339;118340;118341;118342;118343;118344;118345;118346;118347;118348;118349;118350;118351;118352;118353;118354;118355;118356;118357;118358;118359;118360;118361;118362;118363;118364;118365;118366;118367;118368;118369;118370;118371;118372;118373;118374;118375;118376;118377	118355			46	
EVPAVPETLKK	2	Acetyl (K)	1251.7075	0.70745338	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			65.145	55.674	2	0.036455	28261	160513_QHF_FH_JSI10Kac_3	55.567	34.665			2.2637	2.6546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2637	2.6546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2047400	615230	1432200	0	0	0	2047400	615230	1432200	0	0	0	0	0	0	14538	1138	13787	87659	118378	118378			1	
EVPDAEK	1	Unmodified	786.37595	0.37594848	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.035	10.246	2	0.022766	7686	160511_QHF_FH_JSI9i_1	55.902	5.004			0.62227	0.51928	NaN	1	0	Median	0.62227	0.51928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86503000	49861000	36642000	86503000	49861000	36642000	0	0	0	0	0	0	0	0	0	14539	213	13788	87660	118379	118379			1	
EVPEHITEEELK	1	Unmodified	1451.7144	0.71438925	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	3	3	39.803	38.988	2;3	3.5071E-08	33376	160511_QHF_FH_JSI11i_2	134.99	121.57			1.2098	1.106	22.1	11	3	Median	1.2899	1.1233	2.201	2	0	Median	0.84279	1.0333	25.562	3	2	Plateau	1.3261	1.315	18.338	3	1	Plateau	0.9607	1.0344	21.015	3	0	Median	949940000	450000000	499940000	139980000	71001000	68980000	211760000	104160000	107600000	300040000	135340000	164710000	298160000	139500000	158660000	14540	3217	13789	87661;87662;87663;87664;87665;87666;87667;87668;87669;87670;87671	118380;118381;118382;118383;118384;118385;118386;118387;118388;118389;118390;118391;118392;118393;118394;118395;118396;118397	118395			17	
EVPEYLHHVNK	1	Unmodified	1363.6884	0.68844927	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.385	26.385	3	0.017076	22644	160511_QHF_FH_JSI11i_3	33.158	29.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14541	2457	13790	87672	118398	118398			1	
EVPEYLNHVSK	1	Unmodified	1313.6616	0.66156582	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	2	1	1	38.471	37.426	3	3.7708E-06	31875	160511_QHF_FH_JSI12i_2	105.2	93.041			0.92816	1.0589	46.008	6	4	Median	0.65684	0.56666	35.767	2	2	Median	0.90422	1.0903	20.003	2	2	Median	1.1851	1.1847	NaN	1	0	Median	1.4396	1.5971	NaN	1	0	Median	781010000	386150000	394870000	111210000	55640000	55571000	290850000	152610000	138250000	237700000	120580000	117120000	141250000	57324000	83930000	14542	2456	13791	87673;87674;87675;87676;87677;87678	118399;118400;118401;118402;118403;118404;118405	118399			7	
EVPFADLSNMEIGMK	1	Unmodified	1679.7899	0.78987915	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								3	2	2	2	94.721	94.333	2	0.00016319	81306	160511_QHF_FH_JSI12i_2	93.011	69.16			0.98291	0.98779	26.43	9	4	Median	0.98291	0.86518	27.239	3	2	Median	0.91014	1.1071	16.122	2	2	Median	1.1599	1.1347	46.531	2	0	Median	1.0708	1.146	31.801	2	0	Median	264190000	132270000	131920000	60450000	28932000	31518000	34935000	21349000	13586000	70875000	30767000	40108000	97932000	51221000	46711000	14543	2403	13792	87679;87680;87681;87682;87683;87684;87685;87686;87687	118406;118407;118408;118409;118410;118411;118412;118413;118414;118415	118407			10	
EVPFFSVLLFAR	0	Unmodified	1423.7864	0.7863724	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.349	89.922	2	2.1417E-12	53949	160513_QHF_FH_JSI10Kac_6	128.52	88.519			1.019	1.0281	9.9836	4	0	Median	1.4137	1.2244	NaN	1	0	Median	0.8192	0.97978	NaN	1	0	Median	1.0469	1.0048	NaN	1	0	Median	0.99195	1.052	NaN	1	0	Median	1813600000	950970000	862580000	358780000	156330000	202450000	571380000	330610000	240770000	555330000	273240000	282090000	328070000	190790000	137270000	14544	3988	13793	87688;87689;87690;87691	118416;118417;118418;118419;118420;118421;118422;118423	118423			8	
EVPGPDCR	0	Unmodified	928.40727	0.40726539	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	14.379	13.938	2	0.023205	11595	160511_QHF_FH_JSI12i_1	43.246	18.248			1.0245	1.0194	24.486	4	0	Median	1.2656	1.0566	NaN	1	0	Median	0.82933	0.98354	NaN	1	0	Median	0.77692	0.76096	NaN	1	0	Median	1.3125	1.3803	NaN	1	0	Median	463770000	238590000	225180000	79220000	33156000	46065000	111980000	66029000	45949000	127370000	71137000	56233000	145200000	68267000	76938000	14545	2751	13794	87692;87693;87694;87695	118424	118424			1	
EVPIPEHIDIYHLTR	0	Unmodified	1830.9628	0.96283322	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							1	2	5	4	77.039	76.368	3;4	6.3909E-05	65301	160511_QHF_FH_JSI12i_3	62.861	56.656			0.96827	0.99813	19.223	12	3	Median	1.3379	1.1679	NaN	1	0	Median	0.74833	0.91868	15.931	2	0	Median	0.93172	0.92129	14.852	5	2	Median	1.0844	1.1875	23.449	4	1	Median	332030000	171890000	160150000	24087000	8195700	15891000	54176000	28621000	25555000	141510000	73367000	68139000	112260000	61702000	50561000	14546	5279	13795	87696;87697;87698;87699;87700;87701;87702;87703;87704;87705;87706;87707	118425;118426;118427;118428;118429;118430;118431;118432;118433;118434;118435;118436;118437	118436			11	
EVPIVQTETK	1	Unmodified	1142.6183	0.61830402	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.684	36.277	2	0.01394	32396	160511_QHF_FH_JSI10i_1	43.308	19.988			0.90791	0.88775	40.078	3	1	Median	NaN	NaN	NaN	0	0	Median	0.70735	0.83214	NaN	1	0	Median	0.90791	0.88775	NaN	1	0	Median	1.5991	1.7169	NaN	1	1	Median	146150000	83232000	62922000	0	0	0	46820000	24568000	22252000	55986000	33730000	22256000	43348000	24934000	18415000	14547	339	13796	87708;87709;87710	118438;118439;118440	118440			3	
EVPLPAGIYNLDDLK	1	Unmodified	1655.877	0.8770379	1134	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		95.897	95.593	2	0.0037603	86958	160511_QHF_FH_JSI11i_1	64.64	51.212			0.64822	0.61954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64822	0.61954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9441900	5495800	3946100	0	0	0	0	0	0	9441900	5495800	3946100	0	0	0	14548	1134	13797	87711	118441	118441			1	
EVPLVFPK	1	Unmodified	927.54295	0.54295423	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			3	3	3	3	67.215	64.582	2	0.0030963	56848	160511_QHF_FH_JSI9i_2	81.635	50.916			0.07316	0.060191	120.21	11	10	Median	0.07316	0.060191	67.809	3	3	Plateau	0.048297	0.057536	17.394	2	2	Median	0.054885	0.05558	162.84	3	2	Plateau	0.12921	0.14244	89.789	3	3	Plateau	8738800000	8374000000	364820000	2046400000	1974100000	72338000	2324200000	2236100000	88106000	2978700000	2856600000	122110000	1389500000	1307200000	82267000	14549	5552	13798	87712;87713;87714;87715;87716;87717;87718;87719;87720;87721;87722;87723	118442;118443;118444;118445;118446;118447;118448;118449;118450;118451;118452;118453;118454	118451			13	
EVPMVVVPPVGAK	1	Unmodified	1320.7475	0.74754405	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	73.386	72.883	2;3	0.00010772	66318	160511_QHF_FH_JSI12i_1	91.584	68.264			0.86239	0.95549	13.249	8	4	Median	1.2456	1.0195	2.2164	2	1	Median	0.74211	0.86855	17.292	2	2	Median	0.94131	0.91177	23.302	2	1	Median	0.85363	0.87942	7.9314	2	0	Median	591080000	312030000	279050000	122670000	59619000	63056000	214620000	126570000	88045000	134910000	67012000	67903000	118870000	58831000	60043000	14550	5213	13799	87724;87725;87726;87727;87728;87729;87730;87731;87732	118455;118456;118457;118458;118459;118460;118461;118462;118463;118464;118465	118458			11	
EVPNTVHQFQLDITVK	1	Unmodified	1866.984	0.98396259	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.935	71.98	3	0.014175	62226	160511_QHF_FH_JSI12i_2	41.359	23.853			0.91712	0.94761	4.8457	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99679	0.98064	NaN	1	0	Median	0.84382	0.91569	NaN	1	1	Median	66904000	32476000	34428000	0	0	0	0	0	0	41398000	20866000	20532000	25506000	11610000	13896000	14551	1883	13800	87733;87734	118466;118467	118466			1	
EVPNYKLITPAVVSER	1	Acetyl (K)	1856.0044	0.0043636815	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.689	72.151	2	0.011942	38155	160513_QHF_FH_JSI11Kac_5	63.537	42.873			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1535800	1535800	0	0	0	0	0	0	0	1535800	1535800	0	0	0	0	14552	2026	13801	87735	118468	118468	2069		1	
EVPQDQHLEAPADQSK	1	Unmodified	1790.8435	0.84350594	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	1	2	3	29.917	26.632	2;3	3.6525E-11	23734	160511_QHF_FH_JSI12i_1	107.14	90.886			0.83875	0.81346	19.163	6	0	Median	1.017	0.8269	NaN	1	0	Median	0.67653	0.80024	NaN	1	0	Median	0.7983	0.78432	26.315	2	0	Median	0.88047	0.94835	27.054	2	0	Median	996530000	574970000	421560000	182620000	97640000	84976000	299810000	164890000	134920000	214510000	129040000	85472000	299590000	183390000	116190000	14553	5591	13802	87736;87737;87738;87739;87740;87741;87742;87743	118469;118470;118471;118472;118473;118474;118475	118470			6	
EVPRAPEDVIQALEEK	1	Unmodified	1821.9472	0.94724273	3351	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	82.668	81.8	3	0.016285	71928	160511_QHF_FH_JSI11i_2	44.005	34.635			0.60669	0.62649	35.652	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82409	0.80611	NaN	1	1	Median	0.44664	0.48689	NaN	1	1	Median	19062000	11110000	7952000	0	0	0	0	0	0	10808000	5293700	5514400	8253500	5815900	2437600	14554	3351	13803	87744;87745	118476;118477	118477			2	
EVPVIFIHPLNTGLFR	0	Unmodified	1851.0407	0.040689608	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	101.18	101.11	3	0.0022584	83673	160511_QHF_FH_JSI10i_3	44.045	37.628			0.96734	1.0638	23.269	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81913	0.90244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1424	1.2541	NaN	1	0	Median	101100000	52639000	48462000	0	0	0	30057000	16664000	13393000	0	0	0	71045000	35976000	35069000	14555	3367	13804	87746;87747	118478;118479	118478			1	
EVQCPEANIDTALCK	1	Unmodified	1746.7917	0.79167007	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0		By MS/MS	By matching		2	0		2									1	1		43.455	42.731	3	0.0031123	37542	160511_QHF_FH_JSI10i_2	32.734	9.2534			0.81961	0.90793	26.612	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89702	1.0959	NaN	1	0	Median	0.74888	0.7522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	324240000	182480000	141760000	0	0	0	192190000	113600000	78587000	132050000	68880000	63171000	0	0	0	14556	3405	13805	87748;87749	118480	118480			1	
EVQDGIAPR	0	Unmodified	983.50361	0.50360861	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	21.032	17.054	2	1.3024E-06	14709	160511_QHF_FH_JSI11i_1	133.23	92.007			1.1119	1.1891	12.189	8	0	Median	1.7905	1.4773	NaN	1	0	Median	1.0107	1.1825	2.6255	2	0	Median	1.5841	1.5367	14.082	3	0	Plateau	1.0335	1.126	2.8486	2	0	Median	1386100000	649070000	737000000	319410000	133760000	185650000	390420000	191920000	198500000	286670000	125250000	161420000	389570000	198140000	191430000	14557	1573	13806	87750;87751;87752;87753;87754;87755;87756;87757	118481;118482;118483;118484;118485;118486;118487;118488	118481			8	
EVQDLAFLDVVSK	1	Unmodified	1461.7715	0.7715102	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	91.219	90.976	2	4.201E-07	82766	160511_QHF_FH_JSI12i_1	135.6	109.08			0.79351	0.87257	2.2595	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7666	0.88662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82137	0.85874	NaN	1	0	Median	49498000	27041000	22457000	0	0	0	29259000	17478000	11782000	0	0	0	20238000	9563600	10675000	14558	1769	13807	87758;87759	118489;118490;118491	118489			3	
EVQEAFLTLHK	1	Unmodified	1313.698	0.69795133	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	52.978	52.008	3	9.0166E-06	44657	160511_QHF_FH_JSI12i_2	84.718	70.782			0.98064	0.96535	7.5546	4	0	Median	1.1031	0.9355	NaN	1	0	Median	0.77754	0.93672	NaN	1	0	Median	1.0797	1.0986	NaN	1	0	Median	0.89066	0.99487	NaN	1	0	Median	334790000	171220000	163570000	54842000	25216000	29626000	73844000	42751000	31092000	98078000	42721000	55356000	108030000	60535000	47495000	14559	4578	13808	87760;87761;87762;87763	118492;118493;118494;118495	118492			4	
EVQEFYK	1	Unmodified	941.44945	0.44944778	1197	P21926	CD9	CD9 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	3.41	8	4					1			3	3	2	5	28.868	27.43	2	0.0036328	23979	160511_QHF_FH_JSI9i_1	127.84	77.212			2.3588	2.6822	119.7	13	13	Median	3.2927	2.6822	118.39	3	3	Median	0.76355	0.91892	132.49	3	3	Plateau	0.94771	0.91654	153.66	2	2	Median	2.2196	2.4924	140.91	5	5	Median	5171800000	2687200000	2484500000	1273400000	534200000	739200000	1310300000	785080000	525190000	1157800000	630830000	526960000	1430300000	737100000	693200000	14560	1197	13809	87764;87765;87766;87767;87768;87769;87770;87771;87772;87773;87774;87775;87776	118496;118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509;118510;118511;118512;118513;118514;118515	118511			20	
EVQEFYKDTYNK	2	Acetyl (K)	1604.7359	0.73585297	1197	P21926	CD9	CD9 antigen	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	57.323	47.927	2	6.9463E-08	24825	160513_QHF_FH_JSI10Kac_3	112.15	94.283			1.2005	1.4192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2005	1.4192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9211900	7628300	1583600	0	0	0	3031600	1448000	1583600	4644400	4644400	0	1535900	1535900	0	14561	1197	13810	87777;87778;87779	118516;118517;118518;118519	118518	1068		4	
EVQEQAEK	1	Unmodified	959.45599	0.45598972	3651	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.079	13.111	2	0.014125	10414	160511_QHF_FH_JSI9i_1	60.972	15.02			5.9937	4.9641	NaN	1	1	Median	5.9937	4.9641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	167200000	36735000	130460000	167200000	36735000	130460000	0	0	0	0	0	0	0	0	0	14562	3651	13811	87780	118520	118520			1	
EVQETTVTEGAAK	1	Unmodified	1361.6674	0.66743906	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.48	5				6					2	3	3	3	23.798	19.492	2	2.5012E-11	16393	160511_QHF_FH_JSI9i_1	199.68	164.38			0.7299	0.78085	47.816	11	8	Median	0.84158	0.68824	25.578	2	2	Median	0.85107	1.0058	55.959	3	2	Median	0.70146	0.69268	37.554	3	2	Median	0.7299	0.78085	79.047	3	2	Median	516430000	287890000	228540000	203470000	103380000	100090000	97119000	58434000	38685000	105160000	57486000	47675000	110680000	68588000	42091000	14563	5108	13812	87781;87782;87783;87784;87785;87786;87787;87788;87789;87790;87791	118521;118522;118523;118524;118525;118526;118527;118528;118529;118530;118531;118532;118533;118534	118532			14	
EVQGNESDLFMSYFPR	0	Unmodified	1917.8567	0.85671317	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								2	3	4	4	91.479	90.995	2;3	2.7508E-159	82663	160511_QHF_FH_JSI10i_1	302.35	280.96			1.0892	1.1007	11.016	12	1	Median	1.3385	1.1141	0.67229	2	0	Median	0.91485	1.0954	2.8407	2	0	Median	1.1602	1.1415	12.832	4	1	Linear	1.231	1.163	13.187	4	0	Linear	859160000	403130000	456030000	118120000	46859000	71265000	252250000	123010000	129250000	247960000	121770000	126190000	240830000	111500000	129330000	14564	1490	13813	87792;87793;87794;87795;87796;87797;87798;87799;87800;87801;87802;87803;87804	118535;118536;118537;118538;118539;118540;118541;118542;118543;118544;118545;118546;118547;118548;118549;118550;118551;118552;118553;118554;118555;118556;118557;118558;118559;118560;118561;118562	118549			28	
EVQKYGEEQVK	2	Acetyl (K)	1377.6776	0.67760981	2287	Q0JRZ9	FCHO2	F-BAR domain only protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.538	25.702	2	0.003937	15271	160513_QHF_FH_JSI11Kac_3	74.162	38.218			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	957460	957460	0	0	0	0	0	0	0	957460	957460	0	0	0	0	14565	2287	13814	87805	118563	118563	2406		1	
EVQMGDFVR	0	Unmodified	1079.507	0.50697943	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	49.519	48.601	2	2.9592E-05	41550	160511_QHF_FH_JSI12i_2	102.62	82.067			1.0247	1.0059	8.0179	9	0	Median	1.2356	1.0168	2.6324	3	0	Median	0.72323	0.8722	9.4134	2	0	Median	1.014	1.0172	2.1614	2	0	Median	0.92643	0.98811	6.4879	2	0	Median	1874200000	961300000	912930000	384200000	188020000	196180000	453460000	261120000	192340000	640090000	308570000	331520000	396490000	203600000	192900000	14566	3973	13815	87806;87807;87808;87809;87810;87811;87812;87813;87814	118564;118565;118566;118567;118568;118569;118570;118571;118572;118573;118574;118575;118576	118566			13	
EVQMHSFPLQFTLHCALLANK	1	Unmodified	2483.2454	0.24535578	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	1	5	3	2	89.644	86.733	3;4	1.6521E-106	43358	160513_QHF_FH_JSI10Kac_6	237.61	206.65			0.81693	0.85891	32.762	11	3	Median	0.71222	0.60432	NaN	1	0	Median	0.73099	0.85891	33.099	5	2	Median	0.81693	0.76722	12.422	3	0	Median	1.3055	1.3057	29.108	2	1	Median	1100500000	595730000	504730000	43795000	23516000	20279000	454420000	254180000	200240000	421630000	226390000	195240000	180620000	91650000	88974000	14567	1544	13816	87815;87816;87817;87818;87819;87820;87821;87822;87823;87824;87825	118577;118578;118579;118580;118581;118582;118583;118584;118585;118586;118587;118588;118589	118589			11	
EVQQGEEFER	0	Unmodified	1249.5575	0.55749468	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				2	1	1	1	22.515	18.898	2	0.00041962	15995	160511_QHF_FH_JSI9i_1	89.029	80.809			1.0916	0.93139	38.657	5	4	Median	1.2344	1.0192	18.16	2	2	Median	0.47619	0.52493	NaN	1	1	Median	0.9912	0.93139	NaN	1	0	Median	1.3973	1.4902	NaN	1	1	Median	285450000	113460000	171990000	188500000	71662000	116840000	1109900	674730	435190	2589800	1218600	1371200	93254000	39906000	53347000	14568	776	13817	87826;87827;87828;87829;87830	118590;118591;118592;118593;118594	118592			5	
EVQQGEEFERR	0	Unmodified	1405.6586	0.65860571	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.54		8	3					1		2	2	4	4	15.798	14.591	2;3	3.6931E-13	11977	160511_QHF_FH_JSI11i_3	154.24	110.96			1.0457	1.0562	24.949	12	0	Median	1.1188	0.94035	8.3846	2	0	Median	0.91824	1.1216	6.6796	2	0	Median	0.9972	0.96562	12.206	4	0	Median	1.0457	1.0606	43.677	4	0	Median	1165400000	526310000	639060000	280270000	110280000	169990000	274490000	138140000	136350000	354210000	150820000	203390000	256400000	127070000	129330000	14569	776	13818	87831;87832;87833;87834;87835;87836;87837;87838;87839;87840;87841;87842	118595;118596;118597;118598;118599;118600;118601;118602;118603;118604;118605;118606;118607;118608;118609;118610	118595			16	
EVQQKIEK	2	Acetyl (K)	1042.5659	0.56587452	1470	P37802	TAGLN2	Transgelin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	24.36	16.977	2	0.011381	10678	160513_QHF_FH_JSI11Kac_3	76.679	23.513			42.562	50.296	52.944	3	3	Plateau	NaN	NaN	NaN	0	0	Median	42.562	50.296	NaN	1	1	Median	18.323	18.657	NaN	1	1	Median	38.662	42.246	NaN	1	1	Median	23248000	585210	22663000	0	0	0	10428000	140970	10288000	5855100	211500	5643600	6964900	232740	6732100	14570	1470	13819	87843;87844;87845	118611;118612;118613	118611	1453		3	
EVQQLQGK	1	Unmodified	928.49779	0.49779495	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	11.61	11.066	2	0.0015803	8999	160511_QHF_FH_JSI12i_1	101.64	40.883			0.39476	0.42182	87.134	3	3	Plateau	2.2023	1.7775	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78032	0.81263	105.36	2	2	Median	563840000	327450000	236390000	176060000	92365000	83694000	0	0	0	0	0	0	387790000	235090000	152700000	14571	5213	13820	87846;87847;87848	118614;118615;118616	118615			3	
EVQQSWPSTVFTTLHSMWLSFPLIHR	0	Unmodified	3126.5749	0.57494642	4067	Q96F25	ALG14	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.464	92.743	4	1.9593E-08	54264	160513_QHF_FH_JSI10Kac_6	80.02	69.313			1.0574	1.2527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0574	1.2527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	392650000	181150000	211500000	0	0	0	392650000	181150000	211500000	0	0	0	0	0	0	14572	4067	13821	87849	118617	118617			1	
EVQSALSTAAADDSK	1	Unmodified	1491.7053	0.70528113	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	31.398	30.826	2	9.2108E-18	26969	160511_QHF_FH_JSI9i_1	129.71	111.44			1.1858	1.2674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1858	1.2674	NaN	1	1	Median	22869000	10928000	11941000	0	0	0	0	0	0	0	0	0	22869000	10928000	11941000	14573	5488	13822	87850;87851	118618;118619	118619			2	
EVQTIEVYK	1	Unmodified	1107.5812	0.58119023	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.841	38.221	2	0.0004336	33772	160511_QHF_FH_JSI9i_1	80.787	54.616			1.1246	1.0455	9.3932	4	0	Median	1.1809	0.97341	NaN	1	0	Median	0.90154	1.0527	NaN	1	0	Median	1.0711	1.0384	NaN	1	0	Median	1.1807	1.2162	NaN	1	0	Median	350790000	157650000	193130000	67333000	30041000	37292000	87595000	45848000	41747000	96820000	39836000	56984000	99037000	41926000	57111000	14574	3350	13823	87852;87853;87854;87855	118620;118621;118622;118623;118624	118623			5	
EVQTNDLK	1	Unmodified	945.47673	0.47672516	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	5.45	6	2	3		5	6				2	7	7	6	16.089	12.251	2	1.1253E-22	7806	160513_QHF_FH_JSI12Kac_3	188.76	91.159			1.4003	1.4004	84.347	22	18	Median	2.0228	1.6712	84.087	2	1	Median	1.8546	2.2394	84.948	7	6	Median	1.8319	1.8395	82.135	7	6	Median	0.43312	0.45865	86.658	6	5	Median	19595000000	9454800000	10140000000	4199600000	1605900000	2593700000	4196700000	1815500000	2381100000	4142800000	1725400000	2417400000	7055600000	4308000000	2747500000	14575	1948	13824	87856;87857;87858;87859;87860;87861;87862;87863;87864;87865;87866;87867;87868;87869;87870;87871;87872;87873;87874;87875;87876;87877	118625;118626;118627;118628;118629;118630;118631;118632;118633;118634;118635;118636;118637;118638;118639;118640;118641;118642;118643;118644;118645;118646;118647;118648;118649;118650	118646			26	
EVQTNDLKEVVNK	2	Acetyl (K)	1556.8046	0.80460124	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					3	6					4	3	2	64.574	55.108	2;3	8.0317E-42	28761	160513_QHF_FH_JSI11Kac_3	203.11	137.89			0.48677	0.5782	83.851	5	0	Median	NaN	NaN	NaN	0	0	Median	0.95157	1.1277	94.476	2	0	Median	0.43288	0.41989	78.272	2	0	Median	0.33456	0.36164	NaN	1	0	Median	78713000	53388000	25325000	0	0	0	25222000	8583600	16639000	25956000	18908000	7047600	27534000	25896000	1638300	14576	1948	13825	87878;87879;87880;87881;87882;87883;87884;87885;87886	118651;118652;118653;118654;118655;118656;118657;118658;118659;118660;118661	118654	1954;1955		11	
EVQTTPSTASNK	1	Unmodified	1261.615	0.61500956	3233	Q7L5N7	LPCAT2	Lysophosphatidylcholine acyltransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.025	9.5964	2	0.00011446	7325	160511_QHF_FH_JSI10i_1	83.869	38.189			0.87418	0.65998	28.872	3	3	Plateau	0.73817	0.6292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66962	0.65998	NaN	1	1	Median	1.0352	1.0607	NaN	1	1	Median	89520000	47537000	41983000	28584000	17231000	11353000	0	0	0	27222000	16198000	11023000	33714000	14107000	19607000	14577	3233	13826	87887;87888;87889;87890	118662;118663;118664;118665	118664			4	
EVQVEHIK	1	Unmodified	980.5291	0.52909508	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.08		8	4					3		3	3	5	4	17.576	15.21	2;3	0.00035945	8985	160513_QHF_FH_JSI12Kac_5	93.649	63.085			1.3844	1.2355	59.689	15	9	Median	1.1287	0.94189	14.553	3	0	Median	3.4097	4.232	32.607	3	3	Plateau	1.3128	1.2355	56.325	5	3	Median	1.1831	1.3486	57.656	4	3	Median	3972700000	1743100000	2229600000	989910000	422070000	567840000	717890000	228610000	489280000	1371000000	663510000	707470000	893900000	428890000	465010000	14578	4027	13827	87891;87892;87893;87894;87895;87896;87897;87898;87899;87900;87901;87902;87903;87904;87905	118666;118667;118668;118669;118670;118671;118672;118673;118674;118675;118676;118677;118678;118679;118680;118681;118682	118679			17	
EVQVEHIKAYVTK	2	Acetyl (K)	1584.8512	0.8511575	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1			By MS/MS	By matching	15	0								2				1	1	68.397	57.604	3	0.00081645	30954	160513_QHF_FH_JSI11Kac_5	63.185	44.363			0.22334	0.23264	6.9885	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22259	0.22142	NaN	1	0	Median	0.2241	0.24442	NaN	1	0	Median	27246000	20222000	7024300	0	0	0	0	0	0	24208000	17813000	6394300	3038200	2408200	630000	14579	4027	13828	87906;87907	118683	118683	3034;3037		1	
EVQYLLNK	1	Unmodified	1005.5495	0.54949617	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.29	4.4	3	3					1			2	1	4		43.941	41.57	2	0.0018455	37376	160511_QHF_FH_JSI10i_1	96.492	50.121			0.29001	0.29044	57.848	6	5	Median	0.34759	0.28853	120.34	2	1	Median	0.20055	0.23343	NaN	1	1	Median	0.36845	0.37031	25.011	3	3	Plateau	NaN	NaN	NaN	0	0	Median	787110000	540710000	246400000	214850000	140050000	74795000	138370000	107620000	30755000	433890000	293050000	140850000	0	0	0	14580	5633	13829	87908;87909;87910;87911;87912;87913;87914	118684;118685;118686;118687;118688;118689;118690;118691	118685			8	
EVQYLLNKAK	2	Acetyl (K)	1246.6921	0.69213767	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		66.558	55.515	2	0.0019384	30953	160513_QHF_FH_JSI11Kac_4	84.213	35.789			1.023	0.9879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.023	0.9879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2658400	1076500	1581900	0	0	0	0	0	0	2658400	1076500	1581900	0	0	0	14581	5633	13830	87915	118692	118692	3508		1	
EVRPDTQYTGR	0	Unmodified	1320.6422	0.64222736	363	O43709	WBSCR22	Probable 18S rRNA (guanine-N(7))-methyltransferase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		14.532	14.323	2;3	0.0019216	11868	160511_QHF_FH_JSI10i_2	46.481	26.385			0.94564	1.0795	25.551	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76037	0.95033	NaN	1	0	Median	0.92297	0.85273	35.034	2	0	Median	NaN	NaN	NaN	0	0	Median	110760000	56817000	53938000	0	0	0	40499000	24081000	16417000	70256000	32736000	37521000	0	0	0	14582	363	13831	87916;87917;87918	118693;118694;118695	118695			2	
EVSDFIQDSGQIK	1	Unmodified	1464.7096	0.70963822	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		56.378	55.677	2	1.7751E-11	50265	160511_QHF_FH_JSI10i_1	201.09	154.63			0.61444	0.595	34.698	5	5	Median	0.86102	0.71071	48.224	2	2	Median	0.57827	0.68445	47.689	2	2	Median	0.60276	0.595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	562880000	313100000	249780000	225090000	114060000	111020000	224290000	127040000	97250000	113510000	72001000	41504000	0	0	0	14583	518	13832	87919;87920;87921;87922;87923	118696;118697;118698;118699;118700	118698			5	
EVSDGIIAPGYEEEALTILSK	1	Unmodified	2233.1366	0.13655965	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.42	101.31	2;3	2.628E-140	92064	160511_QHF_FH_JSI10i_1	283.07	245.65			0.94519	0.9189	7.9301	8	1	Median	1.0904	0.90921	3.9475	2	0	Median	0.81692	0.95523	14.897	2	0	Median	0.91683	0.89594	8.1734	2	1	Median	0.91833	0.95703	8.197	2	0	Median	2728200000	1389600000	1338600000	409870000	188710000	221150000	766980000	384630000	382350000	590870000	299450000	291420000	960470000	516820000	443650000	14584	1381	13833	87924;87925;87926;87927;87928;87929;87930;87931	118701;118702;118703;118704;118705;118706;118707;118708;118709;118710;118711;118712;118713;118714	118709			14	
EVSDLIK	1	Unmodified	802.44363	0.44363412	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	33.102	32.86	2	0.011199	29666	160511_QHF_FH_JSI12i_1	62.717	16.347			9.6158	9.3416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.6158	9.3416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1222400000	80696000	1141700000	0	0	0	0	0	0	1222400000	80696000	1141700000	0	0	0	14585	3862	13834	87932;87933	118715;118716	118716			2	
EVSEEHNLLPQPPR	0	Unmodified	1643.8267	0.82673367	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	44.79	43.85	3	0.00030362	37653	160511_QHF_FH_JSI11i_2	60.196	53.157			1.1862	1.2412	13.056	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3407	1.3612	NaN	1	0	Median	1.0496	1.1317	NaN	1	1	Median	91482000	42231000	49251000	0	0	0	0	0	0	59189000	27886000	31303000	32293000	14345000	17948000	14586	1638	13835	87934;87935	118717;118718;118719	118718			3	
EVSEEQPVVTLEK	1	Unmodified	1485.7563	0.75625407	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	51.382	46.977	2	1.0198E-52	42163	160511_QHF_FH_JSI11i_1	214.26	156.67			1.0721	1.0609	23.416	7	1	Median	1.0721	0.87258	NaN	1	0	Median	0.7803	0.90913	NaN	1	0	Median	1.1045	1.0692	1.8333	2	0	Median	1.0556	1.1259	28.531	3	1	Median	1378900000	695940000	682960000	285420000	132530000	152890000	379940000	212790000	167150000	360850000	185690000	175160000	352690000	164930000	187760000	14587	1649	13836	87936;87937;87938;87939;87940;87941;87942;87943	118720;118721;118722;118723;118724;118725;118726;118727;118728;118729;118730;118731;118732;118733	118720			14	
EVSEIEELK	1	Unmodified	1074.5445	0.54447038	5756				yes	no	0	0	0	0			By MS/MS		1	0	1											1		60.879	60.446	2	0.0012098	54856	160511_QHF_FH_JSI11i_1	73.248	21.394	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14588	5756	13837	87944	118734	118734			1	
EVSFQSTGESEWK	1	Unmodified	1512.6733	0.67325272	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.812	9	6	5							5	5	4	6	49.036	48.179	2;3	1.1427E-33	41079	160511_QHF_FH_JSI12i_2	242.82	221.95			0.96332	0.94848	25.618	17	8	Median	1.2167	1.0096	35.247	5	4	Median	0.80994	0.93972	16.139	4	0	Median	0.9654	0.92107	10.054	4	1	Median	1.025	1.0717	34.743	4	3	Median	9282200000	4665600000	4616600000	2019400000	905570000	1113800000	2341400000	1292000000	1049400000	2081700000	887880000	1193900000	2839700000	1580200000	1259500000	14589	2251	13838	87945;87946;87947;87948;87949;87950;87951;87952;87953;87954;87955;87956;87957;87958;87959;87960;87961;87962;87963;87964	118735;118736;118737;118738;118739;118740;118741;118742;118743;118744;118745;118746;118747;118748;118749;118750;118751;118752;118753;118754;118755;118756;118757;118758;118759;118760;118761;118762;118763;118764;118765;118766;118767;118768;118769;118770;118771;118772;118773;118774;118775;118776	118741			42	
EVSGHSVR	0	Unmodified	869.43553	0.43552905	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.771	4.8635	2	0.03297	2393	160511_QHF_FH_JSI12i_3	49.423	26.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31893000	31893000	0	0	0	0	0	0	0	0	0	0	31893000	31893000	0	14590	5066	13839	87965	118777	118777			1	
EVSHLNALEER	0	Unmodified	1295.647	0.64697839	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								1		2	3	28.106	27.274	2;3	7.1239E-06	22761	160511_QHF_FH_JSI11i_2	103.08	81.62			0.43733	0.4654	5.7185	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48638	0.4846	NaN	1	1	Median	0.39322	0.44695	NaN	1	1	Median	82025000	57195000	24830000	0	0	0	0	0	0	30582000	18462000	12120000	51443000	38733000	12710000	14591	1307	13840	87966;87967;87968;87969;87970;87971	118778;118779;118780;118781;118782;118783;118784	118784			7	
EVSMDDHK	1	Unmodified	959.40185	0.40184566	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	3.42	9	3					1			3	3	3	4	8.2332	7.3069	2;3	0.00095622	5372	160511_QHF_FH_JSI11i_1	116.37	17.374			0.71166	0.72821	48.06	12	6	Median	0.58152	0.48121	82.035	3	2	Median	0.7355	0.89325	52.705	3	2	Median	0.70863	0.68654	9.7564	2	0	Median	0.71733	0.75048	43.481	4	2	Median	1987700000	1055700000	931990000	381800000	178380000	203420000	514610000	274640000	239970000	635340000	312120000	323210000	455960000	290570000	165380000	14592	821	13841	87972;87973;87974;87975;87976;87977;87978;87979;87980;87981;87982;87983;87984	118785;118786;118787;118788;118789;118790;118791;118792;118793;118794;118795;118796;118797;118798	118788			14	
EVSNVQEK	1	Unmodified	931.46108	0.4610751	5850				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.979	12.566	2	0.020831	10364	160511_QHF_FH_JSI12i_1	56.122	11.727	+		0.82509	0.84095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82509	0.84095	NaN	1	1	Median	84271000	39946000	44325000	0	0	0	0	0	0	0	0	0	84271000	39946000	44325000	14593	5850	13842	87985	118799	118799			1	
EVSQPDWTPPPEVTLVLTK	1	Unmodified	2135.115	0.11503634	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	100.43	100.3	2;3	4.7101E-09	88598	160511_QHF_FH_JSI9i_1	134.21	102.98			0.94082	0.90105	10.422	8	0	Median	0.99815	0.83151	11.635	2	0	Median	0.74378	0.87119	1.3813	2	0	Median	0.95839	0.92329	1.0797	2	0	Median	0.97451	1.002	15.297	2	0	Median	512150000	277570000	234580000	76379000	35979000	40400000	148190000	89271000	58915000	160680000	81635000	79048000	126910000	70688000	56219000	14594	1034	13843	87986;87987;87988;87989;87990;87991;87992;87993	118800;118801;118802;118803;118804;118805;118806;118807;118808;118809;118810;118811;118812;118813;118814;118815;118816;118817	118816			18	
EVSSATNALR	0	Unmodified	1046.5356	0.53563702	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			2	3	4	2	19.934	18.668	2	9.9849E-08	16042	160511_QHF_FH_JSI10i_1	122.33	63.348			0.99876	0.85553	63.728	11	5	Median	0.89499	0.75313	18.027	2	0	Median	0.57442	0.68201	91.79	3	2	Median	1.171	1.1453	76.32	4	2	Median	0.97306	1.0444	39.79	2	1	Median	2325700000	1298900000	1026900000	453450000	273970000	179480000	619940000	405930000	214010000	774010000	365060000	408950000	478330000	253900000	224430000	14595	920	13844	87994;87995;87996;87997;87998;87999;88000;88001;88002;88003;88004	118818;118819;118820;118821;118822;118823;118824;118825;118826;118827;118828;118829;118830;118831	118823			14	
EVSSEDIADMHSNLSNYHQYIVK	1	Unmodified	2678.2282	0.22824497	3697	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	66.012	65.547	3;4	2.4472E-25	56511	160511_QHF_FH_JSI12i_3	168.78	160.97			1.087	1.0826	11.691	9	3	Median	1.3395	1.1697	NaN	1	0	Median	0.8995	1.0826	NaN	1	0	Median	1.226	1.1455	16.866	4	3	Median	1.0199	1.1384	7.105	3	0	Plateau	670550000	309830000	360720000	42022000	20593000	21430000	117310000	65366000	51948000	205600000	96432000	109170000	305620000	127440000	178180000	14596	3697	13845	88005;88006;88007;88008;88009;88010;88011;88012;88013	118832;118833;118834;118835;118836;118837;118838;118839	118838			8	
EVSSSFDHVIK	1	Unmodified	1246.6194	0.61936665	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.13		10	3				3	6		6	6	6	4	41.752	36.765	2;3	9.6573E-11	20580	160513_QHF_FH_JSI11Kac_5	108.98	100.47			1.0297	1.116	39.542	21	8	Median	0.97087	0.81815	27.996	6	3	Median	0.9699	1.1603	38.943	5	2	Median	1.1313	1.1136	53.351	6	3	Median	1.4128	1.5774	37.938	4	0	Linear	2814200000	1196100000	1618100000	494200000	203020000	291170000	662160000	260440000	401710000	1114400000	514590000	599790000	543430000	218060000	325380000	14597	5717	13846	88014;88015;88016;88017;88018;88019;88020;88021;88022;88023;88024;88025;88026;88027;88028;88029;88030;88031;88032;88033;88034;88035	118840;118841;118842;118843;118844;118845;118846;118847;118848;118849;118850;118851;118852;118853;118854;118855;118856;118857;118858;118859;118860;118861;118862;118863;118864;118865;118866;118867;118868	118861			29	
EVSTAPAGTDMPAAK	1	Unmodified	1444.6868	0.68679429	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	31.477	30.823	2	2.3815E-07	27667	160511_QHF_FH_JSI12i_1	135.99	81.379			0.85135	0.88622	35.312	7	7	Median	0.80261	0.64446	45.05	2	2	Median	0.95609	1.0829	17.161	2	2	Median	0.70595	0.68261	NaN	1	1	Median	0.92268	0.94092	42.133	2	2	Median	179280000	100980000	78294000	49999000	26181000	23817000	56175000	32026000	24150000	26016000	13591000	12426000	47086000	29185000	17901000	14598	540	13847	88036;88037;88038;88039;88040;88041;88042	118869;118870;118871;118872;118873;118874;118875;118876;118877	118870			9	
EVSTYIK	1	Unmodified	838.44363	0.44363412	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.3	9	5	5			4	4	5	2	9	9	9	7	26.632	21.925	2	0.00091337	1901	160513_QHF_FH_JSI9Kac_4	132.09	55.247			0.94857	0.93541	91.63	33	18	Median	1.0918	0.8989	131.37	8	4	Median	0.914	0.99006	74.761	9	6	Median	0.99375	0.99187	101.18	9	6	Median	0.86811	0.93541	50.05	7	2	Median	109990000000	51247000000	58745000000	26419000000	10491000000	15927000000	26316000000	13365000000	12951000000	27172000000	15777000000	11396000000	30085000000	11613000000	18472000000	14599	2072	13848	88043;88044;88045;88046;88047;88048;88049;88050;88051;88052;88053;88054;88055;88056;88057;88058;88059;88060;88061;88062;88063;88064;88065;88066;88067;88068;88069;88070;88071;88072;88073;88074;88075;88076	118878;118879;118880;118881;118882;118883;118884;118885;118886;118887;118888;118889;118890;118891;118892;118893;118894;118895;118896;118897;118898;118899;118900;118901;118902;118903;118904;118905;118906;118907;118908;118909;118910;118911;118912;118913;118914;118915;118916;118917;118918;118919;118920;118921;118922;118923;118924;118925;118926;118927;118928;118929;118930;118931;118932	118894			55	
EVSTYIKK	2	Unmodified	966.5386	0.53859714	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	4.71		14	12					4	1	8	6	8	9	19.246	17.291	2;3	0.0006351	14568	160511_QHF_FH_JSI9i_2	83.265	64.17			1.4865	1.6416	187.38	30	30	Median	2.679	2.1888	128.48	8	8	Median	1.5416	1.8779	166.52	5	5	Median	0.63166	0.60811	194.55	8	8	Median	0.33778	0.37303	255.47	9	9	Median	5374400000	2423300000	2951200000	486420000	215620000	270800000	706550000	368310000	338240000	1222100000	499780000	722270000	2959400000	1339600000	1619800000	14600	2072	13849	88077;88078;88079;88080;88081;88082;88083;88084;88085;88086;88087;88088;88089;88090;88091;88092;88093;88094;88095;88096;88097;88098;88099;88100;88101;88102;88103;88104;88105;88106;88107	118933;118934;118935;118936;118937;118938;118939;118940;118941;118942;118943;118944;118945;118946;118947;118948;118949;118950;118951;118952;118953;118954;118955;118956;118957;118958;118959;118960;118961;118962;118963;118964;118965;118966;118967	118947			35	
EVSTYIKK	2	Acetyl (K)	1008.5492	0.54916182	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	1.24					1	4	3	4	3	3	4	4	4	38.266	28.271	2	2.4206E-15	6099	160513_QHF_FH_JSI9Kac_3	168.23	107.47			0.69414	0.70914	56.093	11	2	Median	1.1765	0.98559	86.291	3	1	Plateau	0.68682	0.74084	52.79	2	0	Median	0.44681	0.44437	48.106	3	1	Median	0.72961	0.79272	9.9157	3	0	Median	3273900000	1827800000	1446100000	342940000	141790000	201160000	961560000	554820000	406730000	987820000	599720000	388100000	981530000	531440000	450090000	14601	2072	13849	88108;88109;88110;88111;88112;88113;88114;88115;88116;88117;88118;88119;88120;88121;88122	118968;118969;118970;118971;118972;118973;118974;118975;118976;118977;118978;118979;118980;118981;118982;118983;118984;118985	118975	2147		18	
EVTAIETK	1	Unmodified	889.47566	0.47566253	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	24.155	16.811	2	0.0082141	10656	160513_QHF_FH_JSI11Kac_3	78.334	35.938			0.59652	0.61096	22.105	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74038	0.71433	NaN	1	1	Median	0.48062	0.52256	NaN	1	1	Median	10426000	5759900	4665600	0	0	0	0	0	0	6866100	3330900	3535200	3559400	2429000	1130400	14602	2560	13850	88123;88124	118986;118987	118986			2	
EVTDEIVK	1	Unmodified	931.48623	0.48622722	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	29.985	26.666	2	0.0021249	23560	160511_QHF_FH_JSI11i_1	82.452	40.8			0.9695	1.0075	9.7241	6	0	Median	1.0454	0.86516	NaN	1	0	Median	0.88498	1.0595	8.079	2	0	Median	1.054	1.0271	10.821	2	0	Median	0.95533	1.0143	NaN	1	0	Median	2356300000	1243200000	1113100000	539200000	283900000	255300000	612720000	343420000	269310000	567230000	285830000	281400000	637120000	330040000	307080000	14603	1226	13851	88125;88126;88127;88128;88129;88130	118988;118989;118990;118991;118992;118993;118994;118995;118996;118997;118998;118999;119000	118989			13	
EVTDMNLNVINEGGIDK	1	Unmodified	1859.8935	0.8934926	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	71.644	71.027	2	1.4803E-296	64725	160511_QHF_FH_JSI12i_1	341.59	288.87			1.0916	0.97604	15.518	4	4	Median	1.3441	1.1057	9.8714	2	2	Median	0.69713	0.82435	NaN	1	1	Median	0.94184	0.92386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	845120000	390630000	454490000	375010000	151500000	223510000	216580000	110280000	106300000	253530000	128840000	124690000	0	0	0	14604	4260	13852	88131;88132;88133;88134;88135	119001;119002;119003;119004;119005	119002			5	
EVTDMNLNVINEGGIDK	1	Oxidation (M)	1875.8884	0.88840723	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				59.311	58.19	2	7.2048E-12	51686	160511_QHF_FH_JSI9i_1	115.78	100.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14605	4260	13852	88136	119006	119006		2419	1	
EVTDTQMPLVAPVILPEMYK	1	Unmodified	2273.1687	0.16872817	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	101.67	101.56	2;3	9.7526E-43	92277	160511_QHF_FH_JSI11i_1	204.43	177.33			0.85909	0.89968	24.825	9	5	Median	1.1307	0.9234	26.178	3	2	Median	0.82241	0.96645	11.458	2	2	Median	0.9264	0.91028	21.198	2	0	Median	0.65707	0.68097	39.389	2	1	Median	1203400000	689180000	514250000	286320000	144870000	141450000	340160000	210850000	129310000	290310000	157490000	132820000	286650000	175970000	110680000	14606	4193	13853	88137;88138;88139;88140;88141;88142;88143;88144;88145	119007;119008;119009;119010;119011;119012;119013;119014;119015;119016	119007			10	
EVTEPLNLNPAK	1	Unmodified	1323.7034	0.70343063	3663	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.953	51.194	2	1.1363E-09	46014	160511_QHF_FH_JSI10i_1	118.67	63.893			1.8336	1.7135	50.569	3	1	Median	1.0287	0.84047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8336	1.7135	NaN	1	1	Median	2.1828	2.2348	NaN	1	0	Median	202190000	87395000	114800000	67764000	28524000	39240000	0	0	0	67365000	25847000	41519000	67064000	33023000	34041000	14607	3663	13854	88146;88147;88148;88149	119017;119018;119019;119020;119021	119019			5	
EVTFVPGLYK	1	Unmodified	1151.6227	0.62266112	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.3	2	4						3		2	2	3	2	70.562	67.386	2	2.4846E-09	58355	160511_QHF_FH_JSI12i_2	128.69	106.54			1.03	0.99369	35.536	8	2	Median	1.1164	0.94066	10.602	2	1	Median	0.75401	0.90126	0.4641	2	0	Median	1.1627	1.1774	51.579	3	1	Median	1.0325	1.1568	NaN	1	0	Median	918520000	438160000	480360000	170710000	93653000	77053000	238610000	121340000	117270000	361590000	156720000	204870000	147620000	66456000	81162000	14608	999;2197	13855	88150;88151;88152;88153;88154;88155;88156;88157;88158	119022;119023;119024;119025;119026;119027;119028;119029;119030;119031	119023			10	
EVTGGAISSEK	1	Unmodified	1076.535	0.53496832	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.322	14.195	2	0.019775	11677	160511_QHF_FH_JSI11i_1	49.489	13.978			0.89726	0.88467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89726	0.88467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27763000	14465000	13298000	0	0	0	0	0	0	27763000	14465000	13298000	0	0	0	14609	2572	13856	88159	119032	119032			1	
EVTINQSLLAPLR	0	Unmodified	1452.83	0.83002813	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.33	4.19	3	3	2					1		3		3	3	80.283	78.266	2	1.2035E-66	68421	160511_QHF_FH_JSI12i_2	233.13	207.57		+	0.945	0.93906	32.192	8	2	Median	1.1836	1.0382	50.126	3	2	Median	NaN	NaN	NaN	0	0	Median	0.9511	0.96622	22.942	3	0	Median	0.80117	0.88357	4.5822	2	0	Median	552720000	276140000	276580000	121870000	59174000	62698000	0	0	0	249810000	132330000	117480000	181040000	84629000	96409000	14610	53;71	13857	88160;88161;88162;88163;88164;88165;88166;88167;88168	119033;119034;119035;119036;119037;119038;119039;119040;119041;119042;119043	119035			10	
EVTINQSLLAPLRLDADPSLQR	0	Unmodified	2448.3336	0.33363674	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	96.49	96.338	3	5.8355E-29	85253	160511_QHF_FH_JSI10i_2	177.08	167.91		+	1.1115	1.1049	7.5139	8	0	Median	1.226	1.0545	NaN	1	0	Median	0.85541	1.004	11.658	2	0	Median	1.1621	1.1228	2.6997	3	0	Median	1.0488	1.1241	4.7273	2	0	Median	1434900000	695000000	739910000	180830000	79847000	100990000	228500000	127660000	100830000	410170000	191220000	218950000	615410000	296270000	319140000	14611	53;71	13858	88169;88170;88171;88172;88173;88174;88175;88176	119044;119045;119046;119047;119048;119049;119050;119051;119052;119053;119054;119055;119056;119057;119058;119059;119060;119061;119062;119063;119064;119065	119060			22	
EVTIPPK	1	Unmodified	782.4538	0.45380487	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.556	26.008	2	0.025622	23166	160511_QHF_FH_JSI12i_1	47.849	13.845			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14612	1181	13859	88177	119066	119066			1	
EVTIPPKYR	1	Acetyl (K)	1143.6288	0.62880913	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		57.761	46.777	2	0.034041	26832	160513_QHF_FH_JSI11Kac_4	57.047	20.346			0.25365	0.25476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25365	0.25476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2256800	2053100	203730	0	0	0	0	0	0	2256800	2053100	203730	0	0	0	14613	1181	13860	88178	119067	119067			1	
EVTLALLSLPETHLVTQQPTK	1	Unmodified	2317.2893	0.28931231	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	99.025	98.816	3	0.00044349	86618	160511_QHF_FH_JSI11i_2	49.528	41.906			0.78224	0.82107	86.153	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45812	0.44649	NaN	1	1	Median	1.3357	1.5099	NaN	1	0	Median	18692000	11090000	7601900	0	0	0	0	0	0	7559200	5711800	1847400	11132000	5377800	5754400	14614	405	13861	88179;88180	119068;119069	119069			2	
EVTLIHSQVALADK	1	Unmodified	1522.8355	0.83550744	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.8	5.63		1						3			2	1	1	59.189	51.533	2;3	0.00018736	44224	160511_QHF_FH_JSI12i_2	58.723	47.618			1.0547	1.1757	58.269	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.3326	0.39391	NaN	1	1	Median	0.97603	0.96466	NaN	1	0	Median	1.0547	1.1757	NaN	1	0	Median	107190000	55003000	52182000	0	0	0	5183400	3844100	1339300	4698700	2572900	2125800	97303000	48586000	48717000	14615	4380	13862	88181;88182;88183;88184	119070;119071;119072;119073;119074	119070			5	
EVTNASAAGNK	1	Unmodified	1060.5149	0.51490158	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	2	3	6.691	3.4233	2	2.1018E-13	3799	160511_QHF_FH_JSI11i_1	151.83	88.984			1.3241	1.3141	22.861	5	2	Median	1.5853	1.3141	NaN	1	1	Median	1.3241	1.5654	NaN	1	1	Median	1.228	1.2095	14.948	2	0	Median	0.83831	0.86383	NaN	1	0	Median	408690000	204360000	204330000	94626000	35211000	59415000	93994000	56611000	37383000	99959000	42898000	57061000	120110000	69638000	50470000	14616	2618	13863	88185;88186;88187;88188;88189;88190;88191	119075;119076;119077;119078;119079;119080;119081;119082	119075			8	
EVTPEGLQMVK	1	Unmodified	1229.6326	0.63257388	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.5	4	5	3			3	3			4	5	5	4	54.329	49.993	2	6.1798E-10	44279	160511_QHF_FH_JSI9i_1	138.4	116.16			0.92624	0.99037	16.563	16	2	Median	1.2098	1.0056	0.85638	2	0	Median	0.86089	0.96029	14.338	5	0	Median	1.0142	0.97533	23.245	5	2	Median	0.94897	1.0298	17.739	4	0	Median	6436600000	2857400000	3579200000	1502400000	524790000	977580000	1499500000	728390000	771110000	1770300000	733370000	1037000000	1664400000	870820000	793580000	14617	1206	13864	88192;88193;88194;88195;88196;88197;88198;88199;88200;88201;88202;88203;88204;88205;88206;88207;88208;88209	119083;119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094;119095;119096;119097;119098;119099;119100;119101;119102;119103;119104;119105;119106;119107;119108;119109;119110;119111;119112;119113;119114;119115;119116;119117;119118;119119	119107			37	
EVTPEGLQMVK	1	Oxidation (M)	1245.6275	0.6274885	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	0		By MS/MS		By MS/MS	8.6	6.22	2					1	2				3		2	43.939	36.538	2	0.0048779	32635	160511_QHF_FH_JSI10i_1	64.297	35.21			0.71904	0.80245	11.795	4	1	Median	NaN	NaN	NaN	0	0	Median	0.66491	0.75093	6.4264	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82213	0.88326	10.611	2	0	Median	163860000	97304000	66553000	0	0	0	151900000	91544000	60357000	0	0	0	11957000	5760700	6195900	14618	1206	13864	88210;88211;88212;88213;88214	119120;119121;119122;119123;119124;119125;119126	119122		830	7	
EVTPEGLQMVKK	2	Unmodified	1357.7275	0.72753689	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	40.839	40.071	3	0.0027202	34141	160511_QHF_FH_JSI12i_3	54.683	51.555			1.1663	0.88792	15.979	4	4	Linear	1.3824	1.1709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1128	1.1111	NaN	1	1	Median	1.0494	1.1075	27.268	2	2	Median	347030000	178290000	168730000	54623000	23463000	31160000	0	0	0	63603000	30782000	32821000	228800000	124050000	104750000	14619	1206	13865	88215;88216;88217;88218	119127;119128;119129;119130	119130			4	
EVTPESGPPK	1	Unmodified	1039.5186	0.51858998	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	1	3	15.805	14.035	2	8.0353E-06	11966	160511_QHF_FH_JSI12i_1	106.6	80.494			0.89386	0.89376	34.801	5	1	Median	0.90264	0.75369	NaN	1	0	Median	0.76791	0.89376	NaN	1	0	Median	0.83572	0.80093	NaN	1	0	Median	1.2191	1.278	47.481	2	1	Median	603470000	347750000	255720000	148010000	84781000	63232000	169110000	101310000	67796000	151400000	87929000	63473000	134940000	73727000	61218000	14620	1580	13866	88219;88220;88221;88222;88223;88224	119131;119132;119133;119134;119135;119136;119137;119138	119133			8	
EVTPVSSIPVETHR	0	Unmodified	1549.81	0.81002097	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	43.51	42.431	2	0.0012501	36353	160511_QHF_FH_JSI12i_2	61.344	32.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14621	4868	13867	88225;88226;88227	119139;119140;119141	119139			3	
EVTTLTADPPDGIK	1	Unmodified	1455.7457	0.74568938	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.83	50.153	2	0.00010179	45311	160511_QHF_FH_JSI11i_1	136.53	116.23			0.72307	0.75555	16.385	4	0	Median	1.0894	0.91532	NaN	1	0	Median	0.70781	0.83337	NaN	1	0	Median	0.73866	0.68499	NaN	1	0	Median	0.63087	0.64544	NaN	1	0	Median	246340000	150120000	96220000	64077000	37879000	26199000	56176000	33388000	22787000	68418000	42175000	26243000	57667000	36676000	20991000	14622	2761	13868	88228;88229;88230;88231	119142;119143;119144;119145	119142			4	
EVTVPVFYPTEK	1	Unmodified	1407.7286	0.72858275	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	3	1	2	69.831	67.768	2;3	2.4299E-07	63908	160511_QHF_FH_JSI9i_1	130.94	113.5			1.0038	0.95072	25.796	7	1	Median	0.89104	0.73924	35.581	2	0	Median	0.66382	0.80606	19.119	2	1	Median	1.1259	1.0925	NaN	1	0	Median	1.0323	1.1176	5.5323	2	0	Median	1410800000	752880000	657950000	528560000	292000000	236560000	248270000	138790000	109490000	363100000	176010000	187080000	270900000	146080000	124820000	14623	1554	13869	88232;88233;88234;88235;88236;88237;88238;88239	119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158	119154			13	
EVTWEVLEGEVEK	1	Unmodified	1545.7563	0.75625407	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	80.776	80.434	2	5.5732E-52	73114	160511_QHF_FH_JSI11i_1	194.17	164.42			0.82891	0.97465	8.5706	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80972	0.97465	NaN	1	0	Median	1.15	1.1367	NaN	1	1	Median	0.97353	0.98588	NaN	1	0	Median	654290000	304100000	350190000	0	0	0	268460000	123810000	144650000	202120000	94650000	107470000	183710000	85639000	98073000	14624	840	13870	88240;88241;88242;88243	119159;119160;119161;119162;119163;119164	119161			6	
EVTYELDHPGFQIR	0	Unmodified	1702.8315	0.83148469	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	62.654	61.824	2;3	4.1364E-13	53136	160511_QHF_FH_JSI12i_2	125.74	103.21			1.1061	1.1444	16.861	5	0	Median	1.3647	1.1814	NaN	1	0	Median	0.90949	1.1444	NaN	1	0	Median	0.96009	0.94218	20.799	2	0	Median	1.1061	1.2521	NaN	1	0	Median	381850000	204100000	177750000	56258000	20828000	35430000	96389000	55310000	41079000	178470000	98273000	80197000	50731000	29686000	21045000	14625	21	13871	88244;88245;88246;88247;88248;88249;88250;88251	119165;119166;119167;119168;119169;119170;119171;119172;119173	119165			9	
EVVAEDGTVVTIK	1	Unmodified	1358.7293	0.72931103	3694	Q8TBB5	KLHDC4	Kelch domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	49.301	48.761	2	0.00032053	44133	160511_QHF_FH_JSI11i_1	72.531	48.309			3.4142	3.4351	23.052	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0017	2.9184	NaN	1	0	Median	3.8833	4.0432	NaN	1	1	Median	150750000	47442000	103310000	0	0	0	0	0	0	87162000	27087000	60075000	63592000	20355000	43237000	14626	3694	13872	88252;88253	119174;119175	119174			2	
EVVAEVVK	1	Unmodified	871.50148	0.50148335	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.955	28.362	2	0.0075276	25402	160511_QHF_FH_JSI12i_1	59.245	32.283			0.77939	0.85669	16.043	4	1	Median	1.2984	1.0507	NaN	1	0	Median	0.76773	0.89011	NaN	1	0	Median	0.73537	0.71486	NaN	1	1	Median	0.79123	0.82452	NaN	1	0	Median	412120000	214110000	198010000	68697000	35229000	33468000	98207000	55114000	43094000	125460000	60924000	64539000	119750000	62839000	56915000	14627	453	13873	88254;88255;88256;88257	119176;119177;119178;119179;119180	119177			5	
EVVAGSHELGQDYEHVTMLQER	0	Unmodified	2526.1809	0.18090085	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	4	2	57.054	56.655	3;4	2.0309E-37	50174	160511_QHF_FH_JSI11i_3	194.25	186.42			0.9389	1.0113	8.6304	7	1	Median	NaN	NaN	NaN	0	0	Median	0.88357	1.0874	8.8129	2	0	Median	1.0564	1.0113	2.512	3	1	Median	0.9071	0.91023	6.2195	2	0	Median	455620000	225860000	229760000	0	0	0	111450000	50455000	61000000	199410000	99430000	99976000	144760000	75976000	68786000	14628	2162	13874	88258;88259;88260;88261;88262;88263;88264;88265	119181;119182;119183;119184;119185;119186;119187;119188;119189;119190	119182			10	
EVVATLLPSAK	1	Unmodified	1126.6598	0.65977491	5343	Q9UJG1	MOSPD1	Motile sperm domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.952	56.296	2	8.2525E-05	51205	160511_QHF_FH_JSI12i_1	90.108	64.549			0.9459	0.93829	8.8886	4	0	Median	0.97616	0.81708	NaN	1	0	Median	0.75761	0.90203	NaN	1	0	Median	1.0118	0.99247	NaN	1	0	Median	0.91658	0.97601	NaN	1	0	Median	169930000	82804000	87126000	38050000	14825000	23225000	44742000	24364000	20378000	44126000	20235000	23891000	43012000	23380000	19632000	14629	5343	13875	88266;88267;88268;88269	119191;119192;119193;119194	119192			2	
EVVDAGLVGLER	0	Unmodified	1255.6772	0.67721588	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		60.977	60.34	2	0.00075107	53676	160511_QHF_FH_JSI9i_1	68.069	48.798			1.1691	1.075	11.387	3	0	Plateau	1.3382	1.075	NaN	1	0	Median	1.0213	1.2128	NaN	1	0	Median	0.98785	0.96589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176570000	74739000	101830000	59698000	22037000	37661000	59462000	27177000	32285000	57413000	25525000	31888000	0	0	0	14630	681	13876	88270;88271;88272	119195	119195			1	
EVVDEGLIPGDGLGAAGLDSSFYGHLK	1	Unmodified	2715.3392	0.33917563	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.662	97.427	3	4.7943E-06	86115	160511_QHF_FH_JSI10i_2	53.089	42.831			0.54956	0.6516	27.364	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.52779	0.62264	NaN	1	1	Median	1.035	1.0153	NaN	1	1	Median	0.91301	0.98368	NaN	1	1	Median	48266000	29408000	18858000	0	0	0	17469000	14076000	3393800	13203000	5402400	7800300	17594000	9929500	7664000	14631	2305	13877	88273;88274;88275	119196;119197;119198	119198			3	
EVVDGLEK	1	Unmodified	887.46001	0.46001246	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				2	3	3	2	27.089	23.6	2	0.0016738	20952	160511_QHF_FH_JSI10i_1	83.206	16.213			0.75928	0.81701	31.717	8	5	Median	1.1104	0.9048	NaN	1	1	Median	0.56186	0.65186	19.732	2	2	Median	0.91668	0.89064	49.386	3	2	Median	0.71119	0.76898	31.938	2	0	Median	1615300000	892000000	723270000	384050000	196940000	187110000	330250000	211200000	119050000	613470000	331300000	282170000	287510000	152570000	134940000	14632	1199	13878	88276;88277;88278;88279;88280;88281;88282;88283;88284;88285	119199;119200;119201;119202;119203;119204;119205;119206;119207;119208;119209	119206			11	
EVVDPTK	1	Unmodified	786.41233	0.41233399	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	15.11	11.752	2	0.012047	10303	160511_QHF_FH_JSI10i_1	69.998	23.628		+	0.82577	0.84804	14.724	7	1	Median	1.0171	0.8218	NaN	1	0	Median	0.67575	0.80062	29.127	2	0	Median	0.96351	0.93895	10.407	2	1	Median	0.75416	0.8155	5.5318	2	0	Median	4019400000	2156700000	1862700000	903150000	351950000	551200000	953660000	596950000	356710000	1007800000	540890000	466910000	1154800000	666910000	487910000	14633	55	13879	88286;88287;88288;88289;88290;88291;88292	119210;119211;119212;119213;119214;119215;119216;119217;119218;119219	119215			10	
EVVEAHVDQK	1	Unmodified	1152.5775	0.57750184	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.85	8	8	1				2			5	6	4	4	14.186	12.769	2;3	1.2118E-09	10556	160511_QHF_FH_JSI10i_1	135.43	97.88			0.86562	0.85431	30.884	18	10	Median	0.91243	0.74878	27.785	5	3	Median	0.72821	0.87443	40.936	5	3	Median	0.97707	0.94764	33.429	4	2	Median	0.81129	0.85959	26.577	4	2	Median	2141400000	1253000000	888410000	456120000	262920000	193190000	550260000	320930000	229330000	804420000	493610000	310820000	330580000	175510000	155070000	14634	3	13880	88293;88294;88295;88296;88297;88298;88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310;88311	119220;119221;119222;119223;119224;119225;119226;119227;119228;119229;119230;119231;119232;119233;119234;119235;119236;119237;119238	119224			18	
EVVEAHVDQKNK	2	Acetyl (K)	1436.726	0.72595699	3	P0DPI2;A0A0B4J2D5			yes	no	1	0	0	1				By MS/MS	14	0							1						1	26.904	19.058	3	0.0017219	11691	160513_QHF_FH_JSI12Kac_4	57.802	44.924			0.60539	0.65423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60539	0.65423	NaN	1	0	Median	7246900	4871500	2375400	0	0	0	0	0	0	0	0	0	7246900	4871500	2375400	14635	3	13881	88312	119239	119239	1		1	
EVVEEAENGR	0	Unmodified	1130.5204	0.52038089	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	5.63	4	4			3	3	1			1	5	5	4	14.915	11.316	2	5.3966E-25	7283	160513_QHF_FH_JSI12Kac_3	186.16	164.03			0.86106	0.95161	18.524	15	1	Median	1.1367	0.95161	NaN	1	0	Median	0.81739	0.94373	24.893	5	1	Median	1.0385	1.0042	13.216	5	0	Median	0.86747	0.9411	22.983	4	0	Median	7911800000	4086200000	3825700000	1739100000	822070000	917060000	2172500000	1247500000	924990000	2231000000	1123600000	1107400000	1769200000	892950000	876210000	14636	849	13882	88313;88314;88315;88316;88317;88318;88319;88320;88321;88322;88323;88324;88325;88326;88327	119240;119241;119242;119243;119244;119245;119246;119247;119248;119249;119250;119251;119252;119253;119254;119255;119256;119257;119258;119259;119260	119254			20	
EVVEQGLLK	1	Unmodified	1013.5757	0.57571092	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				41.377	40.165	2	0.0011242	35481	160511_QHF_FH_JSI9i_1	80.219	43.824			1.3657	1.1224	NaN	1	1	Median	1.3657	1.1224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109630000	53131000	56500000	109630000	53131000	56500000	0	0	0	0	0	0	0	0	0	14637	4361	13883	88328	119261	119261			1	
EVVESEGERK	1	Unmodified	1160.5673	0.56733108	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							2	2	2	3	7.0013	6.66	2;3	2.5118E-05	4324	160511_QHF_FH_JSI11i_2	111.61	46.355			0.80378	0.87017	33.143	9	1	Median	1.118	0.97818	16.548	2	0	Median	0.48406	0.58038	23.929	2	1	Median	0.77781	0.78254	33.955	2	0	Median	0.80378	0.92475	44.108	3	0	Median	612570000	343640000	268930000	127000000	63036000	63960000	97516000	60653000	36863000	163650000	84863000	78789000	224410000	135090000	89318000	14638	3685	13884	88329;88330;88331;88332;88333;88334;88335;88336;88337	119262;119263;119264;119265;119266;119267;119268;119269;119270	119269			9	
EVVEVGQK	1	Unmodified	886.476	0.47599688	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		16.554	15.961	2	0.0059057	13094	160511_QHF_FH_JSI9i_1	64.207	29.007			2.0901	1.877	5.2793	2	0	Median	2.1935	1.8082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9915	1.9484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	717350000	233800000	483550000	369690000	122750000	246950000	0	0	0	347660000	111050000	236610000	0	0	0	14639	4673	13885	88338;88339	119271;119272	119272			2	
EVVHLILFYENR	0	Unmodified	1530.8195	0.81946344	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.795	74.154	3	3.7486E-05	40566	160513_QHF_FH_JSI10Kac_6	89.013	76.246			0.97725	1.1726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97725	1.1726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92684000	61074000	31610000	0	0	0	92684000	61074000	31610000	0	0	0	0	0	0	14640	4258	13886	88340	119273;119274	119273			2	
EVVHTVSLHEIDVINSR	0	Unmodified	1946.0221	0.022139011	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	2	1	3	4	60.598	59.159	2;3;4	3.4005E-38	50697	160511_QHF_FH_JSI12i_3	205.31	165.07			1.132	1.073	20.64	9	2	Median	1.0133	0.86771	17.564	2	1	Median	0.90531	1.1182	NaN	1	0	Median	1.132	1.0675	0.92468	3	0	Plateau	1.3127	1.4096	5.3658	3	1	Median	1218400000	518560000	699800000	115760000	48426000	67337000	70418000	36208000	34210000	485030000	223310000	261720000	547150000	210620000	336530000	14641	5487	13887	88341;88342;88343;88344;88345;88346;88347;88348;88349;88350	119275;119276;119277;119278;119279;119280;119281;119282;119283;119284	119283			10	
EVVIAQNDK	1	Unmodified	1014.5346	0.53457439	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	1	3	19.976	17.387	2	0.00015011	14825	160511_QHF_FH_JSI10i_1	106.68	37.3			1.1621	1.1388	85.583	7	5	Median	1.2013	0.98804	131.62	2	2	Median	2.1251	2.5199	NaN	1	1	Median	1.1621	1.1388	NaN	1	0	Median	0.78117	0.85714	98.449	3	2	Median	1234300000	565010000	669310000	407340000	183720000	223620000	229160000	106640000	122520000	9030400	4308000	4722300	588790000	270350000	318440000	14642	636	13888	88351;88352;88353;88354;88355;88356;88357	119285;119286;119287;119288;119289;119290	119288			6	
EVVIVSATR	0	Unmodified	972.5604	0.56039521	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.36	2	3				1	2	4	2	2	6	3	3	38.312	31.878	2	0.00012035	19248	160513_QHF_FH_JSI11Kac_4	109.71	58.748			0.85762	0.98091	16.18	14	3	Median	1.2601	1.0752	4.7017	2	1	Median	0.84351	1.0331	15.319	6	1	Median	0.99509	1.0023	19.946	3	0	Plateau	0.79314	0.9238	5.6467	3	1	Plateau	3057800000	1682300000	1375500000	328110000	154580000	173530000	1420500000	783930000	636550000	620040000	287740000	332300000	689210000	456090000	233120000	14643	1249	13889	88358;88359;88360;88361;88362;88363;88364;88365;88366;88367;88368;88369;88370;88371	119291;119292;119293;119294;119295;119296;119297;119298;119299;119300;119301;119302;119303;119304;119305;119306;119307;119308;119309;119310;119311;119312;119313	119299			23	
EVVKPVPITSPAVSK	2	Unmodified	1549.9079	0.9079441	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	5.75	4.76			6				2			1		3	4	48.972	45.298	2;3	6.0041E-12	38494	160511_QHF_FH_JSI12i_3	107.03	88.661			0.74613	0.76957	7.5488	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76225	0.72651	6.1691	3	3	Median	0.72602	0.79719	8.1797	3	3	Median	938440000	455940000	482500000	0	0	0	0	0	0	321580000	149490000	172090000	616860000	306450000	310410000	14644	4108	13890	88372;88373;88374;88375;88376;88377;88378;88379	119314;119315;119316;119317;119318;119319;119320;119321	119321			8	
EVVLAEK	1	Unmodified	786.44872	0.4487195	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.218	20.697	2	0.010374	17523	160511_QHF_FH_JSI9i_1	75.109	16.128			0.7944	0.79053	23.317	4	0	Median	0.88422	0.73691	NaN	1	0	Median	0.71371	0.84806	NaN	1	0	Median	0.69028	0.66554	NaN	1	0	Median	1.0855	1.1382	NaN	1	0	Median	830500000	405290000	425210000	204600000	104640000	99954000	178940000	95644000	83297000	215080000	107300000	107780000	231880000	97708000	134170000	14645	2296	13891	88380;88381;88382;88383	119322;119323;119324;119325;119326;119327	119326			6	
EVVLSEK	1	Unmodified	802.44363	0.44363412	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.978	18.481	2	0.020458	15732	160511_QHF_FH_JSI10i_1	60.682	6.4769			0.63092	0.61433	37.427	4	2	Median	0.59681	0.49287	NaN	1	0	Median	0.66699	0.76572	NaN	1	1	Median	0.38514	0.37695	NaN	1	1	Median	0.79471	0.83345	NaN	1	0	Median	986720000	596300000	390420000	217350000	126470000	90882000	319840000	206820000	113010000	205890000	135390000	70505000	243640000	127620000	116020000	14646	2046	13892	88384;88385;88386;88387	119328;119329;119330;119331;119332	119330			5	
EVVLYAHFR	0	Unmodified	1132.6029	0.60292873	3292	Q7Z7A3	CTU1	Cytoplasmic tRNA 2-thiolation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	55.394	46.214	2;3	0.0019057	24524	160513_QHF_FH_JSI9Kac_6	48.423	44.531			1.3148	1.0707	29.33	5	2	Median	1.3148	1.0707	NaN	1	0	Median	1.1168	1.334	47.63	2	2	Median	1.3453	1.3009	NaN	1	0	Median	0.83943	0.90879	NaN	1	0	Median	75119000	36624000	38494000	15816000	7500200	8315400	39710000	18577000	21133000	11043000	4796400	6246400	8550300	5751300	2799100	14647	3292	13893	88388;88389;88390;88391;88392	119333;119334;119335	119333			3	
EVVLYVK	1	Unmodified	848.50076	0.50075507	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		1	2	3	1	52.936	42.32	2	0.008944	22697	160513_QHF_FH_JSI9Kac_5	86.086	41.476			0.84605	0.99137	61.985	7	1	Median	1.9227	1.5478	NaN	1	0	Median	0.82801	0.98419	3.157	2	0	Median	1.0116	0.99137	100.76	3	1	Median	0.81682	0.88816	NaN	1	0	Median	48759000	23594000	25165000	5829100	2003800	3825200	15440000	7558400	7882000	23635000	11780000	11855000	3853900	2251100	1602800	14648	5722	13894	88393;88394;88395;88396;88397;88398;88399	119336;119337;119338;119339;119340;119341;119342;119343;119344	119336			9	
EVVNIQTWINKPDVK	2	Unmodified	1781.9676	0.96758424	5019	Q9NUY8	TBC1D23	TBC1 domain family member 23	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	70.888	70.739	3	9.2237E-05	63052	160511_QHF_FH_JSI11i_3	100.41	88.125			0.95532	0.93538	2.8888	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0187	0.95468	NaN	1	1	Median	0.89591	0.91647	NaN	1	1	Median	134030000	69294000	64734000	0	0	0	0	0	0	66492000	34971000	31521000	67536000	34323000	33214000	14649	5019	13895	88400;88401	119345;119346	119345			2	
EVVNKLIPDSIGK	2	Acetyl (K)	1452.8188	0.81879474	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.661						3	4	1			2	4	2	77.257	67.429	2	2.9912E-12	34248	160513_QHF_FH_JSI12Kac_3	128.67	109.36			0.24719	0.25365	112.31	5	0	Median	NaN	NaN	NaN	0	0	Median	1.4049	1.6526	6.2382	2	0	Median	0.2059	0.20094	25.174	2	0	Median	0.23673	0.25365	NaN	1	0	Median	33305000	23376000	9929200	0	0	0	12290000	4881900	7407600	14141000	12551000	1590600	6874100	5943100	930980	14650	1948	13896	88402;88403;88404;88405;88406;88407;88408;88409	119347;119348;119349;119350;119351;119352;119353;119354;119355	119351	1955		9	
EVVQANTVDER	0	Unmodified	1258.6153	0.61534391	1897	P58005	SESN3	Sestrin-3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.602	19.122	2	0.0023331	16622	160511_QHF_FH_JSI12i_1	61.65	47.443			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14651	1897	13897	88410	119356	119356			1	
EVVQNFAK	1	Unmodified	933.49198	0.4919813	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	1	2	24.47	23.637	2	8.9596E-05	20716	160511_QHF_FH_JSI11i_1	131.04	88.037			0.81032	0.83361	43.181	8	2	Median	1.0218	0.84162	51.947	3	1	Plateau	0.6755	0.80863	15.704	2	0	Median	0.85497	0.82567	NaN	1	0	Median	0.57338	0.63053	35.977	2	1	Median	3903300000	2112100000	1791200000	924680000	394970000	529710000	1086500000	669960000	416530000	909260000	516560000	392700000	982870000	530650000	452220000	14652	2487	13898	88411;88412;88413;88414;88415;88416;88417;88418	119357;119358;119359;119360;119361;119362;119363;119364;119365;119366;119367;119368;119369;119370;119371	119358			15	
EVVSAQPATFLAR	0	Unmodified	1387.746	0.74596415	1312	P28799	GRN	Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.612	58.279	2	0.00094199	49959	160511_QHF_FH_JSI12i_2	94.363	86.982			0.70169	0.76682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70169	0.76682	NaN	1	1	Median	61550000	43766000	17784000	0	0	0	0	0	0	0	0	0	61550000	43766000	17784000	14653	1312	13899	88419	119372	119372			1	
EVVSHVIK	1	Unmodified	909.52837	0.5283668	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.58		8	6					5	7	7	8	7	4	19.201	15.199	2;3	0.00084375	12939	160511_QHF_FH_JSI9i_2	65.224	54.351			1.0352	1.0749	55.532	25	11	Median	1.4327	1.227	50.414	7	3	Median	1.0352	1.187	53.435	7	5	Median	0.99557	1.0002	74.565	7	2	Median	1.027	1.0724	49.326	4	1	Median	4533300000	2198600000	2334700000	1025800000	425350000	600450000	1145300000	677840000	467480000	1553400000	691530000	861840000	808840000	403920000	404910000	14654	1395	13900	88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436;88437;88438;88439;88440;88441;88442;88443;88444;88445	119373;119374;119375;119376;119377;119378;119379;119380;119381;119382;119383;119384;119385;119386;119387;119388;119389;119390;119391;119392;119393;119394;119395;119396;119397;119398;119399;119400;119401;119402;119403	119385			31	
EVVSHVIKQGK	2	Acetyl (K)	1264.7139	0.71393574	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		33.546	23.839	2;3	0.0028185	14207	160513_QHF_FH_JSI11Kac_5	53.013	27.121			0.34012	0.33729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34012	0.33729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6313500	5010100	1303400	0	0	0	0	0	0	6313500	5010100	1303400	0	0	0	14655	1395	13901	88446;88447	119404;119405	119404	1351		2	
EVVTEHLINK	1	Unmodified	1180.6452	0.64518747	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	33.488	32.56	2;3	7.3766E-06	27629	160511_QHF_FH_JSI12i_2	116.52	95.015			1.3805	1.2042	50.058	7	3	Median	1.0968	0.95542	32.724	2	2	Median	0.75607	0.91967	NaN	1	0	Median	1.3417	1.3416	23.558	2	0	Median	2.2077	2.4301	51.424	2	1	Median	307670000	140340000	167330000	38366000	18957000	19409000	36182000	21311000	14871000	154510000	77477000	77031000	78617000	22595000	56022000	14656	2455	13902	88448;88449;88450;88451;88452;88453;88454;88455	119406;119407;119408;119409;119410;119411;119412;119413;119414	119406			8	
EVVTEIRDK	1	Unmodified	1087.5873	0.58733824	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			19.214	18.426	2	0.048709	15731	160511_QHF_FH_JSI10i_2	53.775	9.967			0.86769	1.0583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86769	1.0583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27054000	15086000	11967000	0	0	0	27054000	15086000	11967000	0	0	0	0	0	0	14657	5414	13903	88456	119415	119415			1	
EVVVAESELQK	1	Unmodified	1229.6503	0.65033243	4479	Q9BVM2	DPCD	Protein DPCD	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						3					1	2		49.088	39.728	2	0.0029305	22008	160513_QHF_FH_JSI11Kac_3	75.294	30.985			2.0327	1.9814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0327	1.9814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3543100	1034500	2508600	0	0	0	618970	0	618970	2924100	1034500	1889600	0	0	0	14658	4479	13904	88457;88458;88459	119416;119417;119418	119416			3	
EVVVHLLK	1	Unmodified	935.5804	0.58040237	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	42.494	41.875	3	0.0013143	36732	160511_QHF_FH_JSI11i_3	72.485	39.644			1.7437	1.7386	8.5099	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7861	1.7287	0.80359	2	2	Median	1.3721	1.4923	NaN	1	1	Median	60790000	23910000	36880000	0	0	0	0	0	0	48297000	19404000	28893000	12493000	4506300	7986900	14659	2884	13905	88460;88461;88462	119419;119420;119421	119419			3	
EVVVSVPQR	0	Unmodified	1011.5713	0.57129425	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			35.342	34.386	2	0.0066733	30193	160511_QHF_FH_JSI10i_2	55.37	38.594			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14660	3734	13906	88463	119422	119422			1	
EVVVYAPLSK	1	Unmodified	1103.6227	0.62266112	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0	By matching		By MS/MS		1	0	2									1		1		54.228	53.434	2	0.0091271	48193	160511_QHF_FH_JSI11i_1	49.35	22.096			1.3126	1.1773	49.123	2	0	Median	1.0086	0.83182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.708	1.6662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153150000	62398000	90750000	53421000	25605000	27815000	0	0	0	99727000	36792000	62935000	0	0	0	14661	4976	13907	88464;88465	119423	119423			1	
EVVVYLDDNQKPPVGEGLNR	1	Unmodified	2240.1437	0.14371071	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	1				By MS/MS	2	0		2											2	63.627	62.324	3	4.5884E-06	53544	160511_QHF_FH_JSI12i_2	81.723	67.109			1.4478	1.5626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4478	1.5626	NaN	1	1	Median	31506000	9569100	21937000	0	0	0	0	0	0	0	0	0	31506000	9569100	21937000	14662	1790	13908	88466;88467	119424;119425	119425			2	
EVWALVQAGIR	0	Unmodified	1240.6928	0.69280637	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	2	1	2	1	80.065	74.162	2;3	2.6261E-07	39290	160513_QHF_FH_JSI11Kac_6	110.87	74.178			2.4195	1.4402	62.842	5	4	Linear	2.4152	2.1643	NaN	1	1	Median	2.0607	2.5028	NaN	1	1	Median	1.0035	0.95757	57.718	2	2	Median	0.65029	0.70686	NaN	1	0	Median	227580000	101340000	126240000	48094000	13946000	34148000	55161000	21408000	33753000	98613000	49196000	49417000	25712000	16786000	8926200	14663	1650	13909	88468;88469;88470;88471;88472;88473	119426;119427;119428;119429;119430;119431	119426			5	
EVWDYVFFK	1	Unmodified	1231.5914	0.59136099	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	1	3	1	3	91.678	89.248	2	1.5105E-05	82007	160511_QHF_FH_JSI11i_2	109.21	87.708			0.97225	1.0099	26.451	7	1	Median	1.0407	0.87022	NaN	1	0	Median	0.81693	0.99351	2.3102	2	1	Median	0.98445	1.0048	NaN	1	0	Median	0.97225	1.0442	35.53	3	0	Plateau	645220000	305880000	339330000	62574000	19024000	43550000	226300000	117850000	108450000	89997000	42555000	47442000	266340000	126450000	139890000	14664	5215	13910	88474;88475;88476;88477;88478;88479;88480;88481	119432;119433;119434;119435;119436;119437;119438;119439;119440;119441;119442;119443;119444;119445;119446;119447;119448;119449;119450	119443			19	
EVWDYVTVRK	1	Unmodified	1293.6717	0.67173657	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	50.255	50.019	3	0.0013395	42881	160511_QHF_FH_JSI12i_3	62.633	53.2			1.9269	1.8996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9269	1.8996	NaN	1	1	Median	30415000	12482000	17933000	0	0	0	0	0	0	0	0	0	30415000	12482000	17933000	14665	4836	13911	88482	119451	119451			1	
EVWEELDGLDPNRFNPK	1	Unmodified	2056.9854	0.98541915	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		3									1	2		82.219	81.579	2;3	1.2929E-05	72513	160511_QHF_FH_JSI10i_2	90.348	80.352			1.0374	1.1318	26.538	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1225	1.3655	NaN	1	0	Median	0.95881	0.93819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172130000	88750000	83376000	0	0	0	122520000	62020000	60496000	49610000	26730000	22880000	0	0	0	14666	2195	13912	88483;88484;88485	119452;119453;119454;119455	119454			4	
EVWFFGLQYQDTK	1	Unmodified	1659.7933	0.79330827	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	6.56	1	8	5	2					10	5	8	7	6	93.293	89.459	2;3	1.2257E-40	46522	160513_QHF_FH_JSI10Kac_6	237.53	190.33			0.98034	0.97272	21.164	20	3	Median	1.0882	0.92933	15.469	4	0	Median	0.79763	0.94783	29.058	5	1	Median	1.0206	0.99299	19.348	6	1	Median	1.0543	1.1116	14.557	5	1	Median	6001600000	3179300000	2822300000	1003000000	487110000	515920000	1886200000	1071800000	814440000	1641000000	811990000	829030000	1471300000	808420000	662880000	14667	1270	13913	88486;88487;88488;88489;88490;88491;88492;88493;88494;88495;88496;88497;88498;88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511	119456;119457;119458;119459;119460;119461;119462;119463;119464;119465;119466;119467;119468;119469;119470;119471;119472;119473;119474;119475;119476;119477;119478;119479;119480;119481;119482;119483;119484;119485;119486;119487;119488;119489;119490;119491;119492;119493;119494;119495;119496;119497;119498;119499;119500;119501;119502;119503;119504;119505	119502			49	
EVWFFGLQYVDSK	1	Unmodified	1616.7875	0.78749461	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.73		2		1					6	2	1	4	2	95.183	88.376	2;3	7.7011E-51	49528	160513_QHF_FH_JSI10Kac_6	212.09	188.72			0.93434	0.90236	19.896	9	0	Median	1.3196	1.1246	20.819	2	0	Median	0.69255	0.82748	NaN	1	0	Median	0.95638	0.92895	22.678	4	0	Median	0.803	0.85055	8.3632	2	0	Median	2784100000	1424300000	1359700000	589650000	262280000	327370000	619240000	358070000	261170000	909870000	474150000	435720000	665290000	329820000	335480000	14668	1426	13914	88512;88513;88514;88515;88516;88517;88518;88519;88520	119506;119507;119508;119509;119510;119511;119512;119513;119514;119515;119516;119517	119517			10	
EVWNTYELDLVNYQNK	1	Unmodified	2026.9636	0.96362108	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	84.486	84.149	2;3	6.9993E-30	76325	160511_QHF_FH_JSI10i_1	186.17	153.67			0.67309	0.66783	68.456	6	2	Median	NaN	NaN	NaN	0	0	Median	1.3197	1.5109	80.096	2	0	Median	0.506	0.48388	33.855	2	1	Median	0.56139	0.58321	30.872	2	1	Median	192880000	112700000	80182000	0	0	0	61603000	31031000	30572000	77272000	50324000	26948000	54007000	31345000	22662000	14669	2517	13915	88521;88522;88523;88524;88525;88526	119518;119519;119520;119521;119522;119523;119524	119523			7	
EVWYFGLHYVDNK	1	Unmodified	1668.7936	0.79364262	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.48		15	2						8	7	6	7	5	78.936	75.192	2;3	2.1038E-171	37141	160513_QHF_FH_JSI12Kac_6	303.2	281.17			0.94788	0.90751	37.483	20	7	Median	0.98719	0.83464	28.466	5	2	Median	0.8166	0.93519	45.906	5	3	Median	1.002	0.99411	34.008	6	1	Median	0.88953	0.95743	32.501	4	1	Median	21838000000	10700000000	11138000000	5864600000	2451700000	3413000000	7223100000	3684500000	3538600000	4243700000	2323000000	1920800000	4507000000	2241200000	2265800000	14670	1073	13916	88527;88528;88529;88530;88531;88532;88533;88534;88535;88536;88537;88538;88539;88540;88541;88542;88543;88544;88545;88546;88547;88548;88549;88550;88551	119525;119526;119527;119528;119529;119530;119531;119532;119533;119534;119535;119536;119537;119538;119539;119540;119541;119542;119543;119544;119545;119546;119547;119548;119549;119550;119551;119552;119553;119554;119555;119556;119557;119558;119559;119560;119561;119562;119563;119564;119565;119566;119567;119568;119569;119570	119562			46	
EVYAAAAEVLGLILR	0	Unmodified	1586.9032	0.90319307	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.62		8	5						8	6	5	5	5	101.4	97.975	2;3	1.7082E-32	51652	160513_QHF_FH_JSI9Kac_6	206.36	182.99			0.77199	0.75138	23.976	20	2	Median	0.93224	0.80663	29.223	5	1	Median	0.60661	0.73809	10.552	5	0	Median	0.86138	0.87414	19.854	5	1	Median	0.61167	0.67982	22.157	5	0	Median	3106100000	1730000000	1376100000	527440000	236390000	291050000	713160000	430830000	282330000	1159900000	600260000	559650000	705610000	462510000	243100000	14671	2094	13917	88552;88553;88554;88555;88556;88557;88558;88559;88560;88561;88562;88563;88564;88565;88566;88567;88568;88569;88570;88571;88572	119571;119572;119573;119574;119575;119576;119577;119578;119579;119580;119581;119582;119583;119584;119585;119586;119587;119588;119589;119590;119591;119592;119593;119594;119595;119596;119597;119598	119588			28	
EVYAAAAEVLGLILRYVMERK	1	Unmodified	2393.3141	0.31408728	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			101.34	95.62	4	6.5184E-08	56468	160513_QHF_FH_JSI10Kac_6	137.09	122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6709700	6709700	0	0	0	0	6709700	6709700	0	0	0	0	0	0	0	14672	2094	13918	88573	119599	119599			1	
EVYAADYYK	1	Unmodified	1120.5077	0.50769094	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		34.169	33.875	2	0.0037855	30271	160511_QHF_FH_JSI10i_1	69.423	41.215			1.8036	1.9171	32.562	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0778	2.4135	NaN	1	1	Median	1.5656	1.5229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	122020000	48731000	73292000	0	0	0	69613000	27210000	42403000	52410000	21521000	30889000	0	0	0	14673	2181	13919	88574;88575	119600;119601	119601			2	
EVYELLDSPGK	1	Unmodified	1248.6238	0.62378333	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.23	4	4				4	2	3		3	5	3	6	59.486	53.732	2	3.3454E-38	48997	160511_QHF_FH_JSI12i_1	208.03	168.72			0.85452	0.98011	63.275	17	8	Median	1.1854	0.98011	69.486	3	1	Median	0.85452	1.0117	67.073	5	2	Median	0.76742	0.75453	44.682	3	2	Plateau	1.1508	1.2421	51.402	6	3	Median	6674000000	3170800000	3503200000	1690500000	709920000	980620000	1845300000	966540000	878710000	1640800000	755620000	885210000	1497400000	738690000	758690000	14674	1206	13920	88576;88577;88578;88579;88580;88581;88582;88583;88584;88585;88586;88587;88588;88589;88590;88591;88592	119602;119603;119604;119605;119606;119607;119608;119609;119610;119611;119612;119613;119614;119615;119616;119617;119618;119619;119620;119621;119622;119623;119624;119625;119626;119627;119628;119629;119630;119631;119632;119633;119634;119635;119636	119611			35	
EVYFAER	0	Unmodified	912.43413	0.43413207	1700	P50238	CRIP1	Cysteine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.47	4	4	4				3	5	2	5	5	5	7	33.623	29.09	2	2.1718E-07	16809	160513_QHF_FH_JSI10Kac_4	139.28	119			1.0031	0.96726	17.611	21	1	Median	1.0842	0.89638	10.507	5	1	Median	0.76033	0.91177	21.606	5	0	Median	1.1252	1.1096	10.406	5	0	Median	0.9646	1.046	16.006	6	0	Median	11095000000	5496200000	5598400000	1781300000	802440000	978850000	2857300000	1555400000	1301900000	3259100000	1497400000	1761600000	3197000000	1640900000	1556100000	14675	1700	13921	88593;88594;88595;88596;88597;88598;88599;88600;88601;88602;88603;88604;88605;88606;88607;88608;88609;88610;88611;88612;88613;88614	119637;119638;119639;119640;119641;119642;119643;119644;119645;119646;119647;119648;119649;119650;119651;119652;119653;119654;119655;119656;119657;119658;119659;119660;119661;119662;119663;119664;119665;119666;119667;119668;119669;119670;119671;119672;119673;119674	119649			38	
EVYLHAIVR	0	Unmodified	1098.6186	0.61857879	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.14	6.87		8	3						11	5	7	6	4	46.025	41.249	2;3	2.0596E-05	22551	160513_QHF_FH_JSI11Kac_6	94.309	70.99			0.88192	0.9456	17.266	17	2	Median	0.8822	0.75511	15.711	4	0	Median	0.78664	0.95019	12.237	4	1	Median	1.0437	1.0213	23.243	5	1	Median	0.8985	0.97151	8.4338	4	0	Median	1122200000	576060000	546170000	193660000	96282000	97374000	321740000	179570000	142170000	373000000	185680000	187330000	233830000	114530000	119300000	14676	1283	13922	88615;88616;88617;88618;88619;88620;88621;88622;88623;88624;88625;88626;88627;88628;88629;88630;88631;88632;88633;88634;88635;88636	119675;119676;119677;119678;119679;119680;119681;119682;119683;119684;119685;119686;119687;119688;119689;119690;119691;119692;119693;119694;119695;119696;119697;119698;119699;119700;119701;119702;119703;119704	119679			30	
EVYMTPLR	0	Unmodified	1007.511	0.51100218	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.574	42.605	2	0.0017787	36543	160511_QHF_FH_JSI11i_2	85.064	57.539			0.78152	0.85681	15.324	4	1	Median	1.2541	1.0429	NaN	1	1	Median	0.69091	0.86038	NaN	1	0	Median	0.884	0.85325	NaN	1	0	Median	0.64513	0.71676	NaN	1	0	Median	405430000	226390000	179040000	68673000	30149000	38524000	98458000	63949000	34509000	149370000	80958000	68411000	88933000	51338000	37595000	14677	4337	13923	88637;88638;88639;88640	119705;119706;119707;119708;119709	119708			5	
EVYPEAR	0	Unmodified	862.41848	0.418482	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	1	3	1	14.195	12.095	2	0.009972	10098	160511_QHF_FH_JSI9i_1	67.032	14.349			0.7617	0.79784	7.9605	4	2	Median	NaN	NaN	NaN	0	0	Median	0.65635	0.76503	NaN	1	1	Median	0.80806	0.78746	12.374	2	1	Median	0.78137	0.83207	NaN	1	0	Median	1073100000	602600000	470540000	0	0	0	365560000	204350000	161210000	369520000	212890000	156630000	338060000	185360000	152700000	14678	130	13924	88641;88642;88643;88644;88645;88646	119710;119711;119712;119713;119714;119715;119716;119717	119717			8	
EVYPEETPELGAVMHAMATK	1	Unmodified	2202.0337	0.033691254	470	O75063	FAM20B	Glycosaminoglycan xylosylkinase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			85.643	85.059	3	0.00029859	75573	160511_QHF_FH_JSI10i_2	56.304	40.712			0.54148	0.66107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54148	0.66107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39222000	25873000	13349000	0	0	0	39222000	25873000	13349000	0	0	0	0	0	0	14679	470	13925	88647	119718	119718			1	
EVYQPGSVLDFPR	0	Unmodified	1505.7514	0.75144346	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	73.48	72.529	2	2.8508E-05	62560	160511_QHF_FH_JSI12i_2	104.43	79.048			0.94155	0.97586	8.4174	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91384	0.91947	NaN	1	1	Median	0.97011	1.0357	NaN	1	1	Median	110020000	58270000	51750000	0	0	0	0	0	0	69064000	37593000	31471000	40956000	20677000	20279000	14680	1463	13926	88648;88649;88650	119719;119720;119721	119720			3	
EVYQQQQYGSGGR	0	Unmodified	1498.6801	0.68006943	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.17	6	1				3	3			3	4	3	3	18.815	14.602	2	2.091E-66	12523	160511_QHF_FH_JSI9i_1	270.56	234.18			0.99619	1.0491	16.001	12	1	Median	1.2498	1.1699	11.151	3	0	Plateau	0.78469	0.93237	12.112	3	0	Plateau	0.82863	0.79812	17.468	3	1	Plateau	0.85985	0.93379	18.958	3	0	Median	2311200000	1177500000	1133700000	454530000	192560000	261980000	573940000	324990000	248950000	593320000	291160000	302160000	689400000	368800000	320600000	14681	4308	13927	88651;88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663	119722;119723;119724;119725;119726;119727;119728;119729;119730;119731;119732;119733;119734;119735;119736;119737;119738;119739;119740;119741;119742	119735			21	
EWAALGNMSK	1	Unmodified	1105.5226	0.5226295	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.735	50.343	2	0.00070119	43095	160511_QHF_FH_JSI12i_2	79.16	46.745			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14682	4700	13928	88664	119743	119743			1	
EWAAQYR	0	Unmodified	922.42972	0.42971539	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.476	24.217	2	0.014827	20159	160511_QHF_FH_JSI12i_2	65.263	52.055			0.95833	1.0684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95833	1.0684	NaN	1	1	Median	107100000	41067000	66030000	0	0	0	0	0	0	0	0	0	107100000	41067000	66030000	14683	5436	13929	88665	119744	119744			1	
EWAFEESK	1	Unmodified	1024.4502	0.45017606	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	43.376	42.436	2	0.013264	36436	160511_QHF_FH_JSI11i_2	52.482	36.279			1.1972	1.1926	14.047	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74841	0.91605	NaN	1	0	Median	1.216	1.2113	NaN	1	0	Median	0.94091	1.0267	NaN	1	0	Median	116880000	59214000	57662000	0	0	0	27297000	16767000	10530000	50917000	21957000	28961000	38662000	20490000	18172000	14684	4959	13930	88666;88667;88668	119745;119746;119747	119747			3	
EWAHATIIPK	1	Unmodified	1164.6291	0.62914348	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.17		7	7						3	3	3	6	5	45.384	42.942	2;3	2.5522E-08	38067	160511_QHF_FH_JSI10i_2	121.9	121.9			1.0066	0.98881	32.646	16	1	Median	1.0313	0.87796	24.498	3	0	Median	0.77904	0.95933	23.612	3	0	Plateau	1.0575	0.99174	12.315	5	1	Median	0.99915	0.99779	50.574	5	0	Median	3815200000	1769700000	2045500000	357630000	163650000	193980000	531340000	252100000	279240000	1543900000	763620000	780310000	1382300000	590310000	792010000	14685	1345	13931	88669;88670;88671;88672;88673;88674;88675;88676;88677;88678;88679;88680;88681;88682;88683;88684;88685	119748;119749;119750;119751;119752;119753;119754;119755;119756;119757;119758;119759;119760;119761;119762;119763;119764;119765;119766;119767;119768;119769;119770;119771;119772;119773;119774;119775;119776;119777;119778;119779;119780;119781	119771			34	
EWAMNVGDK	1	Unmodified	1048.4648	0.46478027	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.305	40.849	2	8.9167E-05	36630	160511_QHF_FH_JSI10i_1	94.692	48.534			1.0651	1.2345	19.142	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0651	1.2686	NaN	1	0	Median	1.0027	0.93829	NaN	1	0	Median	0.87012	0.88948	NaN	1	0	Median	212740000	117620000	95122000	0	0	0	75789000	44265000	31524000	70352000	41086000	29266000	66598000	32267000	34332000	14686	1199	13932	88686;88687;88688	119782;119783;119784;119785;119786;119787	119786			6	
EWAMNVGDKK	2	Unmodified	1176.5597	0.55974328	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		2	4									4	2	30.757	30.609	2;3	1.2037E-05	25608	160511_QHF_FH_JSI12i_3	103.31	74.163			0.90628	0.89803	133.11	6	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2787	1.2318	162.34	4	3	Median	0.90628	0.89803	2.1175	2	0	Median	854550000	385950000	468590000	0	0	0	0	0	0	379280000	132390000	246890000	475270000	253560000	221710000	14687	1199	13933	88689;88690;88691;88692;88693;88694	119788;119789;119790;119791;119792;119793;119794;119795	119792			8	
EWCDAFL	0	Unmodified	939.37965	0.37965365	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	81.699	81.357	2	0.01095	74010	160511_QHF_FH_JSI10i_1	72.62	68.264			0.99133	1.053	17.866	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93343	1.053	NaN	1	0	Median	0.99133	0.98154	NaN	1	0	Median	1.3601	1.377	NaN	1	0	Median	63012000	26886000	36126000	0	0	0	18002000	8572000	9429800	26996000	11236000	15759000	18015000	7077700	10937000	14688	541	13934	88695;88696;88697	119796;119797	119797			2	
EWEKFQEEAK	2	Acetyl (K)	1364.6248	0.62484596	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	58.112	47.459	2	0.036441	26147	160513_QHF_FH_JSI10Kac_4	53.683	11.682			1.8169	2.0496	117.08	2	1	Median	NaN	NaN	NaN	0	0	Median	3.9811	4.6904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82918	0.89562	NaN	1	0	Median	8726100	3608600	5117500	0	0	0	2819800	390850	2429000	0	0	0	5906300	3217800	2688600	14689	1282	13935	88698;88699	119798;119799;119800	119798			3	
EWFFLLSK	1	Unmodified	1068.5644	0.56441796	4199	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.2		1							9	2	4	2	2	90.756	83.524	2	0.00088423	44930	160513_QHF_FH_JSI11Kac_6	104.44	0			1.0882	1.0911	27.826	10	3	Median	1.1727	1.0133	11.817	2	0	Median	1.0089	1.1858	44.426	4	3	Median	1.294	1.2453	14.522	2	0	Median	0.94012	1.002	4.4304	2	0	Median	945390000	438560000	506830000	184290000	83511000	100780000	372910000	182730000	190180000	228520000	93728000	134790000	159670000	78588000	81080000	14690	4199	13936	88700;88701;88702;88703;88704;88705;88706;88707;88708;88709	119801;119802;119803;119804;119805;119806;119807;119808;119809;119810;119811;119812;119813;119814	119801			14	
EWFLQAAK	1	Unmodified	991.51272	0.51271674	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	6.49	3	4	4				3	4	3	3	6	6	6	64.513	59.24	2	2.1941E-09	32581	160513_QHF_FH_JSI10Kac_6	150.17	105.77			1.0118	1.0593	21.174	21	1	Median	1.3755	1.1413	33.488	3	0	Plateau	0.94299	1.0923	8.1994	6	1	Median	1.1065	1.0694	12.341	6	0	Median	0.84399	0.92242	17.778	6	0	Median	13179000000	5875000000	7304200000	1780000000	737940000	1042000000	3414200000	1648500000	1765700000	4431900000	1874500000	2557400000	3553100000	1614100000	1939100000	14691	856	13937	88710;88711;88712;88713;88714;88715;88716;88717;88718;88719;88720;88721;88722;88723;88724;88725;88726;88727;88728;88729;88730	119815;119816;119817;119818;119819;119820;119821;119822;119823;119824;119825;119826;119827;119828;119829;119830;119831;119832;119833;119834;119835;119836;119837;119838;119839;119840;119841;119842;119843;119844;119845;119846;119847;119848;119849;119850;119851;119852;119853;119854;119855;119856;119857	119857			43	
EWFLQAAKDPSAVAK	2	Acetyl (K)	1701.8726	0.87262123	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1			By MS/MS		14.7	0.471							1	2				3		83.321	72.748	2;3	4.9367E-16	38436	160513_QHF_FH_JSI11Kac_5	138.94	121.91			0.20558	0.19829	27.733	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20558	0.19829	27.733	2	0	Median	NaN	NaN	NaN	0	0	Median	10157000	8413500	1743100	0	0	0	0	0	0	10157000	8413500	1743100	0	0	0	14692	856	13938	88731;88732;88733	119858;119859;119860;119861	119859	532;534		4	
EWGDDEEEQPSK	1	Unmodified	1447.5739	0.5739326	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.376	21.846	2	3.5845E-16	18903	160511_QHF_FH_JSI10i_1	164.65	151.3			1.06	1.0683	4.5216	4	0	Median	1.3905	1.1628	NaN	1	0	Median	0.90978	1.0641	NaN	1	0	Median	1.0868	1.0724	NaN	1	0	Median	1.0339	1.054	NaN	1	0	Median	346070000	165600000	180470000	78459000	32520000	45938000	91097000	50535000	40562000	92323000	43648000	48675000	84191000	38894000	45297000	14693	2604	13939	88734;88735;88736;88737	119862;119863;119864;119865;119866;119867;119868;119869	119866			8	
EWGSGSDTLR	0	Unmodified	1106.4993	0.49925152	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1			1	2	1	1	30.394	27.867	2	1.65E-05	23426	160511_QHF_FH_JSI12i_2	113.62	95.774			0.85774	0.93954	10.331	5	1	Median	1.3038	1.1448	NaN	1	0	Median	0.82226	0.98386	6.518	2	1	Median	0.85774	0.8782	NaN	1	0	Median	0.84215	0.93469	NaN	1	0	Median	553540000	285570000	267960000	131910000	54450000	77458000	117760000	65549000	52208000	161900000	92305000	69598000	141970000	73271000	68701000	14694	1103	13940	88738;88739;88740;88741;88742	119870;119871;119872;119873;119874;119875;119876;119877;119878	119871			9	
EWHHFLVVNMK	1	Unmodified	1438.718	0.71797526	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									18	4	7	3	4	69.006	60.23	2;3;4	3.5178E-15	32015	160513_QHF_FH_JSI9Kac_6	127.42	54.357			0.99457	1.0152	31.318	16	5	Median	1.0888	0.92702	8.4897	3	0	Median	0.66918	0.78862	29.743	6	4	Median	1.2192	1.1604	19.655	3	0	Median	1.3744	1.4874	22.532	4	1	Median	1043800000	570680000	473130000	161390000	86930000	74460000	591770000	348320000	243450000	154310000	77671000	76638000	136340000	57761000	78578000	14695	1343	13941	88743;88744;88745;88746;88747;88748;88749;88750;88751;88752;88753;88754;88755;88756;88757;88758;88759;88760	119879;119880;119881;119882;119883;119884;119885;119886;119887;119888;119889;119890;119891;119892;119893;119894;119895;119896;119897;119898;119899;119900;119901;119902;119903;119904;119905;119906;119907	119886			29	
EWHHFLVVNMK	1	Oxidation (M)	1454.7129	0.71288988	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	4	1		1	57.341	48.159	3	0.00053314	25076	160513_QHF_FH_JSI12Kac_6	68.107	61.67			1.0265	0.97815	38.301	6	1	Median	1.0353	0.87789	46.561	4	1	Median	0.81463	0.95768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1568	1.2082	NaN	1	0	Median	203930000	100790000	103130000	120320000	57618000	62700000	49317000	29007000	20310000	0	0	0	34293000	14168000	20125000	14696	1343	13941	88761;88762;88763;88764;88765;88766	119908;119909;119910;119911;119912;119913;119914;119915	119912		983	7	
EWIKPIMFSGGIGSMEADHISK	2	Unmodified	2432.1868	0.18683785	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	85.828	85.391	3;4	7.8585E-07	75783	160511_QHF_FH_JSI11i_3	73.675	69.513			1.3522	1.2916	45.016	3	1	Median	NaN	NaN	NaN	0	0	Median	2.0019	2.2023	NaN	1	1	Median	1.3522	1.2916	NaN	1	0	Median	0.86808	0.90008	NaN	1	0	Median	150780000	67724000	83056000	0	0	0	29697000	13326000	16371000	81401000	35052000	46349000	39682000	19346000	20336000	14697	241	13942	88767;88768;88769;88770	119916;119917;119918;119919;119920;119921	119916			6	
EWIPRPPEK	1	Unmodified	1150.6135	0.61349341	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	3	1	40.42	39.618	3	0.0020656	33138	160511_QHF_FH_JSI10i_3	63.283	44.503			0.78354	0.82198	22.349	4	1	Median	NaN	NaN	NaN	0	0	Median	0.84715	0.98937	8.5319	2	1	Median	0.76922	0.72539	NaN	1	0	Median	0.62436	0.64574	NaN	1	0	Median	758540000	418270000	340270000	0	0	0	421600000	232990000	188610000	277420000	151670000	125750000	59524000	33611000	25913000	14698	1553	13943	88771;88772;88773;88774;88775;88776;88777	119922;119923;119924;119925;119926;119927;119928;119929;119930	119927			9	
EWISQATAIWTAR	0	Unmodified	1531.7783	0.77832691	5326	Q9UI42	CPA4	Carboxypeptidase A4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.395	82.186	2	0.0018576	71327	160511_QHF_FH_JSI12i_3	72.006	64.877			0.80211	0.80642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80211	0.80642	NaN	1	0	Median	56828000	34754000	22074000	0	0	0	0	0	0	0	0	0	56828000	34754000	22074000	14699	5326	13944	88778	119931	119931			1	
EWLLGMLGAESAK	1	Unmodified	1403.7119	0.71188683	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2	1	1	2	1	93.547	90.917	2	5.8792E-06	44127	160513_QHF_FH_JSI11Kac_6	103.43	75.42			2.4198	2.4344	11.79	4	3	Median	NaN	NaN	NaN	0	0	Median	1.8431	2.313	NaN	1	1	Median	2.4198	2.4344	5.6888	2	1	Median	2.6021	2.986	NaN	1	1	Median	444860000	139050000	305800000	0	0	0	106060000	46033000	60027000	206360000	56874000	149480000	132440000	36148000	96293000	14700	999	13945	88779;88780;88781;88782;88783	119932;119933;119934;119935;119936;119937;119938	119933			7	
EWLTNFMEDR	0	Unmodified	1339.5867	0.58668632	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0				By MS/MS	3	0			1										1	78.204	77.938	2	0.0074659	67622	160511_QHF_FH_JSI12i_3	51.436	33.572			1.1893	1.2409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1893	1.2409	NaN	1	0	Median	49083000	26123000	22960000	0	0	0	0	0	0	0	0	0	49083000	26123000	22960000	14701	999;2197	13946	88784	119939	119939			1	
EWLVAVK	1	Unmodified	843.48544	0.48543935	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									2	1		56.234	55.633	2	0.020944	48123	160511_QHF_FH_JSI11i_2	60.358	32.104			0.8953	1.0655	18.931	3	1	Median	NaN	NaN	NaN	0	0	Median	0.87765	1.0457	2.6617	2	0	Median	1.4446	1.4491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	183190000	90793000	92396000	0	0	0	75286000	43117000	32170000	107900000	47677000	60226000	0	0	0	14702	3593	13947	88785;88786;88787	119940;119941;119942	119940			3	
EWMPVTK	1	Unmodified	889.43677	0.4367746	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.35	4	9					3	1		2	4	6	5	43.132	39.386	1;2	0.009364	35759	160511_QHF_FH_JSI12i_1	79.469	41.23			1.1152	1.2254	38.575	13	4	Median	1.1243	0.91581	64.024	2	0	Median	1.1084	1.2814	21.948	3	1	Median	1.2305	1.2215	30.486	5	2	Median	0.93918	1.0093	55.644	3	1	Median	9008800000	4428800000	4580000000	1638500000	679570000	958900000	2604300000	1394200000	1210100000	3204200000	1613400000	1590800000	1561800000	741580000	820250000	14703	1084	13948	88788;88789;88790;88791;88792;88793;88794;88795;88796;88797;88798;88799;88800;88801;88802;88803;88804	119943;119944;119945;119946;119947;119948;119949;119950;119951;119952;119953;119954;119955;119956;119957;119958;119959;119960;119961;119962	119948			20	
EWMPVTK	1	Oxidation (M)	905.43169	0.43168922	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	1	0		By MS/MS	By MS/MS		2	0		2									1	1		25.473	24.845	2	0.021313	21558	160511_QHF_FH_JSI10i_2	66.682	37.109			0.88774	0.9928	42.469	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59395	0.73526	NaN	1	0	Median	1.3268	1.3405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	213710000	116600000	97108000	0	0	0	101650000	58115000	43540000	112060000	58488000	53568000	0	0	0	14704	1084	13948	88805;88806	119963;119964	119964			2	
EWMPVTKLGR	1	Acetyl (K)	1257.654	0.65397802	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		76.503	66.517	2	0.016328	36233	160513_QHF_FH_JSI11Kac_6	54.608	43.457			0.37105	0.36778	24.665	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37105	0.36778	24.665	2	0	Median	NaN	NaN	NaN	0	0	Median	27847000	20467000	7380200	0	0	0	0	0	0	27847000	20467000	7380200	0	0	0	14705	1084	13949	88807;88808	119965;119966	119965	927		2	
EWMQALQQAMAEQR	0	Unmodified	1718.7869	0.78685946	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.303	80.303	2	1.145E-12	71746	160511_QHF_FH_JSI11i_3	117.79	104.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14706	4191	13950	88809	119967	119967			1	
EWNGTYHCIFR	0	Unmodified	1481.651	0.65101791	3481	Q8IZF2	GPR116	Probable G-protein coupled receptor 116	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.63	4	1			2	2				1	4	3	1	5.965	2.5339	2	0.00037062	3362	160511_QHF_FH_JSI12i_1	73.157	59.565			0.99104	1.0968	8.7347	9	0	Median	1.3688	1.1087	NaN	1	0	Median	0.88606	1.0873	10.973	4	0	Median	1.1316	1.0968	7.52	3	0	Median	0.90445	0.95033	NaN	1	0	Median	2186200000	1071500000	1114700000	410140000	177830000	232310000	513060000	280630000	232430000	660990000	304680000	356310000	602000000	308310000	293690000	14707	3481	13951	88810;88811;88812;88813;88814;88815;88816;88817;88818	119968;119969;119970;119971;119972;119973	119969			6	
EWPSNLDLR	0	Unmodified	1128.5564	0.55637247	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61.185	60.273	2	0.0013548	51716	160511_QHF_FH_JSI12i_2	77.923	53.291			0.90707	0.94398	2.464	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96089	0.96057	NaN	1	0	Median	0.85627	0.92767	NaN	1	1	Median	237980000	119880000	118110000	0	0	0	0	0	0	154880000	85491000	69390000	83104000	34387000	48717000	14708	1372	13952	88819;88820	119974;119975	119974			2	
EWPSNLDLRK	1	Unmodified	1256.6513	0.65133548	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	6.04		6	7						5	4	4	5	5	52.588	49.283	2;3	4.1078E-10	43529	160511_QHF_FH_JSI11i_3	132.88	94.789			0.90714	1.0424	39.908	18	6	Median	0.9944	0.82669	35.938	4	2	Linear	0.87406	1.0424	1.243	4	1	Median	0.8664	0.82318	58.535	5	1	Median	0.72655	0.78673	37.773	5	2	Median	4923800000	2643600000	2280200000	517040000	257040000	260010000	1106000000	562050000	543920000	2157800000	1139400000	1018400000	1143000000	685180000	457840000	14709	1372	13953	88821;88822;88823;88824;88825;88826;88827;88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838	119976;119977;119978;119979;119980;119981;119982;119983;119984;119985;119986;119987;119988;119989;119990;119991;119992;119993;119994;119995;119996;119997;119998;119999;120000;120001;120002;120003;120004;120005;120006;120007;120008;120009;120010;120011;120012;120013;120014;120015;120016	119978			41	
EWQAAWLLK	1	Unmodified	1143.6077	0.60767975	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	82.675	81.949	2	0.0008662	72728	160511_QHF_FH_JSI10i_2	84.498	68.354			1.2128	1.2072	24.772	5	1	Median	1.0122	0.85542	NaN	1	0	Median	0.83832	1.0228	NaN	1	0	Median	1.3576	1.3789	18.807	2	1	Median	1.3381	1.4338	NaN	1	0	Median	145060000	64133000	80929000	10125000	4940100	5185300	25093000	12683000	12410000	67708000	27722000	39987000	42136000	18788000	23348000	14710	5555	13954	88839;88840;88841;88842;88843;88844	120017;120018;120019;120020;120021;120022	120022			6	
EWQELDDAEK	1	Unmodified	1261.5463	0.54626129	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	42.82	40.449	2	1.8571E-09	36277	160511_QHF_FH_JSI10i_1	132.01	113.57			1.0667	1.0061	18.959	5	1	Median	1.203	1.0061	NaN	1	0	Median	0.95326	1.1117	15.084	2	0	Median	1.0667	1.0451	NaN	1	0	Median	0.68099	0.73227	NaN	1	1	Median	1505400000	767070000	738320000	206890000	99300000	107590000	450090000	260590000	189500000	461380000	202790000	258590000	387020000	204390000	182630000	14711	2370	13955	88845;88846;88847;88848;88849	120023;120024;120025;120026;120027;120028;120029;120030	120026			8	
EWSGLLEELAR	0	Unmodified	1301.6616	0.66156582	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	93.359	93.076	2	1.4091E-13	80683	160511_QHF_FH_JSI12i_3	134.68	102.74			1.3091	1.2471	14.903	5	4	Median	1.5739	1.3438	NaN	1	1	Median	0.95973	1.1977	NaN	1	1	Median	1.3125	1.2471	NaN	1	0	Median	1.0569	1.1212	25.562	2	2	Median	875340000	463020000	412320000	154920000	69692000	85230000	170480000	100290000	70192000	126250000	51581000	74674000	423690000	241460000	182230000	14712	2176	13956	88850;88851;88852;88853;88854;88855;88856;88857	120031;120032;120033;120034;120035;120036;120037;120038;120039;120040	120040			10	
EWSLESSPAQNWTPPQPR	0	Unmodified	2108.9916	0.99156716	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.098	74.916	2	0.0053836	67936	160511_QHF_FH_JSI10i_1	49.356	36.796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14713	3561	13957	88858	120041	120041			1	
EWTDGLFTHVLR	0	Unmodified	1472.7412	0.74121312	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	3	2	79.967	79.382	2;3	4.2026E-06	68462	160511_QHF_FH_JSI12i_3	112.5	98.819			0.99824	0.95215	29.615	10	3	Median	1.3283	1.1428	41.481	2	0	Median	1.0413	1.1671	14.699	3	1	Median	1.0003	0.93807	40.343	3	1	Median	0.85749	0.87577	3.9745	2	1	Median	312510000	154450000	158060000	22761000	9928200	12833000	59315000	29464000	29851000	128780000	65049000	63729000	101650000	50006000	51648000	14714	2517	13958	88859;88860;88861;88862;88863;88864;88865;88866;88867;88868	120042;120043;120044;120045;120046;120047;120048;120049;120050;120051;120052;120053;120054;120055;120056;120057	120056			16	
EWTLEAGALVLADR	0	Unmodified	1542.8042	0.80420731	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		93.725	93.398	2	0.0029256	82336	160511_QHF_FH_JSI11i_2	67.385	41.266			0.54643	0.5086	16.139	2	2	Median	0.52403	0.45375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56979	0.57008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112990000	83188000	29799000	45365000	32080000	13285000	0	0	0	67622000	51108000	16513000	0	0	0	14715	1674	13959	88869;88870;88871	120058;120059;120060	120059			3	
EWTQKYAM	1	Acetyl (K);Oxidation (M)	1113.4801	0.48009598	1934	P61077;P62837	UBE2D3;UBE2D2	Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2	no	no	1	0	1	1		By MS/MS	By MS/MS		12	0					2						1	1		49.633	40.372	2	0.04055	16972	160513_QHF_FH_JSI11Kac_2	54.549	35.072			0.95176	1.0857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95176	1.0857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2507400	1776200	731140	0	0	0	1650300	919130	731140	857090	857090	0	0	0	0	14716	1934	13960	88872;88873	120061;120062	120061			2	
EWTTTTGDVVNENPEWVK	1	Unmodified	2103.9749	0.97491405	3786	Q8WVQ1	CANT1	Soluble calcium-activated nucleotidase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.826	68.222	2	0.00025007	62153	160511_QHF_FH_JSI12i_1	70.438	57.237			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14717	3786	13961	88874	120063	120063			1	
EWVESMGGK	1	Unmodified	1021.4539	0.45388123	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.64	8	3	1							4	3	2	3	34.379	33.53	2	1.754E-06	29446	160511_QHF_FH_JSI10i_2	130.27	67.557			0.90276	0.78938	33.363	7	5	Median	1.0486	0.86811	13.445	2	1	Median	0.78966	0.9453	31.299	2	1	Median	0.90276	0.88022	NaN	1	1	Median	0.4903	0.5296	37.556	2	2	Median	2799500000	1427000000	1372400000	292020000	139800000	152220000	1012800000	562400000	450440000	806540000	346330000	460210000	688110000	378520000	309590000	14718	1707	13962	88875;88876;88877;88878;88879;88880;88881;88882;88883;88884;88885;88886	120064;120065;120066;120067;120068;120069;120070;120071;120072;120073;120074;120075	120075			12	
EWVESMGGK	1	Oxidation (M)	1037.4488	0.44879585	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	1	0				By MS/MS	2	0		1											1	34.652	33.315	2	0.033464	28283	160511_QHF_FH_JSI12i_2	41.876	25.1			0.95431	1.0097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95431	1.0097	NaN	1	0	Median	23495000	10466000	13029000	0	0	0	0	0	0	0	0	0	23495000	10466000	13029000	14719	1707	13962	88887	120076;120077	120076			2	
EWVNLYHSAAAGR	0	Unmodified	1472.7161	0.71606101	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	46.977	46.374	2;3	3.5189E-05	39564	160511_QHF_FH_JSI12i_3	80.763	53.649			1.4399	1.2922	50.446	3	2	Median	NaN	NaN	NaN	0	0	Median	0.8534	0.98532	NaN	1	1	Median	1.4399	1.2922	NaN	1	0	Median	2.5909	2.6179	NaN	1	1	Median	117290000	43241000	74048000	0	0	0	32476000	13059000	19417000	48357000	21890000	26467000	36456000	8292100	28164000	14720	21	13963	88888;88889;88890;88891;88892	120078;120079;120080;120081;120082	120082			5	
EWVSMAGPR	0	Unmodified	1031.4859	0.48585006	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.472	42.249	2	0.0078657	37226	160511_QHF_FH_JSI11i_3	53.753	41.546			0.98348	1.022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98348	1.022	NaN	1	0	Median	134360000	51041000	83314000	0	0	0	0	0	0	0	0	0	134360000	51041000	83314000	14721	1674	13964	88893;88894	120083;120084	120083			2	
EWVTPKEFR	1	Acetyl (K)	1232.619	0.61897272	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15.4	0.49								3	2	1	2	1	1	70.729	61.06	2	0.012922	32598	160513_QHF_FH_JSI11Kac_5	59.8	41.488			0.88543	1.0222	50.284	5	0	Median	1.1987	1.0406	NaN	1	0	Median	0.92209	1.0793	7.6855	2	0	Median	0.35827	0.35112	NaN	1	0	Median	0.53806	0.58961	NaN	1	0	Median	294010000	144590000	149420000	64127000	29171000	34956000	219340000	107610000	111730000	9648800	7195600	2453200	893490	612870	280620	14722	939	13965	88895;88896;88897;88898;88899	120085	120085	700		1	
EWYIGYYQGR	0	Unmodified	1333.6091	0.60913632	5191	Q9P0V3	SH3BP4	SH3 domain-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		71.286	62.774	2	0.039811	34467	160513_QHF_FH_JSI10Kac_6	58.676	47.144			0.97884	1.0401	14.403	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96023	1.1516	NaN	1	0	Median	0.99782	0.93934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73854000	38367000	35486000	0	0	0	63749000	33532000	30217000	10105000	4835600	5269100	0	0	0	14723	5191	13966	88900;88901	120086;120087	120087			0	
EWYMIISR	0	Unmodified	1096.5376	0.53755128	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.88		3	1						4	2	1	2	3	73.961	69.362	2	1.3806E-10	37889	160513_QHF_FH_JSI10Kac_6	164.53	144.01			1.07	1.0615	4.1884	8	0	Median	1.2687	1.0724	1.7768	2	0	Median	0.87284	1.0267	NaN	1	0	Median	1.1277	1.1186	2.2856	2	0	Median	0.94705	1.0045	2.9793	3	0	Plateau	2361900000	1224000000	1137900000	430440000	204980000	225470000	876290000	455480000	420810000	621960000	316110000	305850000	433200000	247470000	185730000	14724	3290	13967	88902;88903;88904;88905;88906;88907;88908;88909	120088;120089;120090;120091;120092;120093;120094;120095	120095			8	
EWYMIISR	0	Oxidation (M)	1112.5325	0.5324659	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								2	6	3	1	2	2	66.891	57.262	2	0.00021534	29766	160513_QHF_FH_JSI12Kac_6	117.04	104.05			1.085	1.0052	12.908	7	0	Median	1.3583	1.1436	18.042	3	0	Median	0.81994	0.96426	NaN	1	0	Median	1.0169	0.99112	8.2001	2	0	Median	0.96025	1.0052	NaN	1	0	Median	193050000	92625000	100420000	44731000	19139000	25592000	49191000	20983000	28208000	49017000	23990000	25027000	50109000	28512000	21597000	14725	3290	13967	88910;88911;88912;88913;88914;88915;88916;88917	120096;120097;120098;120099;120100;120101;120102;120103;120104;120105;120106	120103		2239	11	
EYAEDDNIYQQK	1	Unmodified	1514.6525	0.65251728	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	32.833	29.5	2	1.4169E-41	26273	160511_QHF_FH_JSI10i_1	201.33	194.8			1.0084	0.97689	12.542	6	0	Median	1.1392	0.94393	NaN	1	0	Median	1.0605	1.3011	NaN	1	0	Median	0.99545	0.97689	3.7317	2	0	Median	0.92394	0.98676	7.8164	2	0	Median	975070000	483430000	491640000	193820000	88808000	105010000	280910000	131250000	149660000	196840000	103220000	93621000	303500000	160150000	143350000	14726	4077	13968	88918;88919;88920;88921;88922;88923	120107;120108;120109;120110;120111;120112;120113;120114;120115;120116;120117	120114			11	
EYAEIIRK	1	Unmodified	1020.5604	0.56039521	3204	Q712K3	UBE2R2	Ubiquitin-conjugating enzyme E2 R2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.25	0.433		3	1								2	2		25.935	25.21	3	0.015278	21365	160511_QHF_FH_JSI11i_3	37.812	15.031			1.08	1.3127	51.224	3	3	Median	NaN	NaN	NaN	0	0	Median	0.72223	0.8849	55.768	2	2	Median	1.5749	1.5589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128800000	70057000	58743000	0	0	0	84811000	48794000	36017000	43989000	21263000	22726000	0	0	0	14727	3204	13969	88924;88925;88926;88927	120118;120119;120120;120121;120122	120118			5	
EYAENIGDGRSPEFR	0	Unmodified	1738.7911	0.79107644	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		38.352	37.901	3	0.060537	32425	160511_QHF_FH_JSI11i_2	25.957	22.362			0.96449	1.0034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96449	1.0034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39834000	21432000	18402000	0	0	0	0	0	0	39834000	21432000	18402000	0	0	0	14728	3817	13970	88928	120123	120123			1	
EYAKGDSR	1	Acetyl (K)	966.44067	0.44067401	2634	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		10.862	3.5059	2	0.044711	4425	160513_QHF_FH_JSI11Kac_3	49.418	32.454			0.50737	0.54237	135.42	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1923	1.4131	NaN	1	0	Median	0.2159	0.20818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9356700	6141900	3214800	0	0	0	2479700	1034800	1444900	6877000	5107100	1769900	0	0	0	14729	2634	13971	88929;88930	120124	120124			1	
EYAQNIWNVEPSDLK	1	Unmodified	1804.8632	0.86317875	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.722	73.221	2	1.5375E-06	65121	160511_QHF_FH_JSI9i_1	147.24	128.11			0.98448	0.89571	18.701	4	3	Median	0.98035	0.7916	NaN	1	1	Median	0.98863	1.1436	NaN	1	1	Median	1.0264	1.0135	NaN	1	1	Median	0.72846	0.78392	NaN	1	0	Median	116510000	63288000	53222000	13352000	7229600	6122200	38977000	21932000	17045000	27131000	15619000	11512000	37051000	18508000	18543000	14730	855	13972	88931;88932;88933;88934	120125;120126;120127;120128;120129	120128			5	
EYAQVFR	0	Unmodified	911.45012	0.45011648	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.05	31.008	2	0.0068704	26240	160511_QHF_FH_JSI11i_2	83.377	53.804			1.1674	0.99686	NaN	1	0	Median	1.1674	0.99686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151260000	62047000	89209000	151260000	62047000	89209000	0	0	0	0	0	0	0	0	0	14731	1421;1272	13973	88935;88936;88937;88938	120130;120131;120132;120133	120132			4	
EYASEGEPLFAGGSAIPK	1	Unmodified	1821.8785	0.87849447	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				67.922	66.928	2	0.0047716	59382	160511_QHF_FH_JSI9i_1	55.196	3.4702			0.89693	0.72646	NaN	1	1	Median	0.89693	0.72646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50656000	20773000	29883000	50656000	20773000	29883000	0	0	0	0	0	0	0	0	0	14732	5481	13974	88939	120134	120134			1	
EYATEVDVDFVRK	1	Unmodified	1569.7675	0.76748745	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.593	3	9	2							3	3	4	4	56.314	55.581	2;3	7.949E-06	47585	160511_QHF_FH_JSI12i_2	125.22	93.795			1.1047	1.1272	27.301	14	3	Median	1.2924	1.1064	16.265	3	2	Median	0.82107	0.99941	15.733	3	1	Plateau	1.2836	1.3191	43.583	4	0	Median	0.9082	1.0058	22.009	4	0	Median	995740000	482990000	512750000	139440000	68643000	70794000	208650000	114580000	94070000	299910000	138420000	161490000	347740000	161350000	186390000	14733	2046;2296	13975	88940;88941;88942;88943;88944;88945;88946;88947;88948;88949;88950;88951;88952;88953	120135;120136;120137;120138;120139;120140;120141;120142;120143;120144;120145;120146;120147;120148;120149;120150;120151;120152	120140			18	
EYAVNEVVAGIK	1	Unmodified	1290.682	0.68196691	2601;5256	Q15014;Q9UBU8	MORF4L2;MORF4L1	Mortality factor 4-like protein 2;Mortality factor 4-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.33	6.13	2						1			1	1		1	66.445	62.338	2	6.8083E-16	55467	160511_QHF_FH_JSI9i_1	160.36	132.34			0.95046	0.97356	26.807	3	1	Median	1.661	1.3843	NaN	1	0	Median	0.6786	0.81788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95046	0.97356	NaN	1	0	Median	279330000	138030000	141300000	97498000	31478000	66020000	7929100	4271800	3657300	0	0	0	173900000	102280000	71622000	14734	2601;5256	13976	88954;88955;88956	120153;120154;120155;120156	120156			4	
EYDALKAAK	2	Acetyl (K)	1049.5393	0.53932542	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		42.485	33.321	2	0.00010377	18910	160513_QHF_FH_JSI11Kac_3	101.54	55.116			0.018184	0.017217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.018184	0.017217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2424600	2373200	51367	0	0	0	0	0	0	2424600	2373200	51367	0	0	0	14735	3968	13977	88957	120157	120157	3016		1	
EYDELAETQGK	1	Unmodified	1281.5725	0.57247604	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.391	27.835	2	0.0029616	24898	160511_QHF_FH_JSI12i_1	70.389	59.932			3.1591	3.2214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1591	3.2214	NaN	1	1	Median	32246000	10799000	21447000	0	0	0	0	0	0	0	0	0	32246000	10799000	21447000	14736	412	13978	88958	120158	120158			1	
EYDELAETQGKLEEK	2	Unmodified	1780.8367	0.83668923	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	45.176	44.686	3	0.0047043	40241	160511_QHF_FH_JSI10i_1	53.328	42.384			0.5784	0.59719	14.438	3	1	Median	NaN	NaN	NaN	0	0	Median	0.40181	0.46997	NaN	1	1	Median	0.6156	0.60915	NaN	1	0	Median	0.5784	0.59719	NaN	1	0	Median	117460000	84547000	32912000	0	0	0	38032000	28242000	9790300	27026000	18378000	8647100	52401000	37926000	14475000	14737	412	13979	88959;88960;88961	120159;120160	120160			2	
EYDEPYVLLQNK	1	Unmodified	1509.7351	0.73512469	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	67.674	66.871	2	3.4725E-05	60990	160511_QHF_FH_JSI12i_1	123.86	104.1			1.1345	1.0417	5.85	2	0	Median	1.2125	0.99946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0615	1.0857	NaN	1	0	Median	116600000	53468000	63136000	46631000	22126000	24505000	0	0	0	0	0	0	69972000	31342000	38630000	14738	292	13980	88962;88963	120161;120162;120163;120164	120162			4	
EYDLIVHQLATYPDVNNSIK	1	Unmodified	2331.1747	0.17467649	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	84.502	83.921	3	1.6957E-11	74452	160511_QHF_FH_JSI10i_2	132.14	123.35			0.95508	1.0204	25.078	6	2	Median	1.2436	1.0614	NaN	1	0	Median	0.90035	1.0591	18.276	2	1	Median	1.4945	1.5116	NaN	1	1	Median	0.79679	0.8396	22.017	2	0	Median	627300000	277910000	349390000	155370000	53409000	101960000	134560000	66907000	67650000	174910000	64861000	110050000	162460000	92736000	69729000	14739	525	13981	88964;88965;88966;88967;88968;88969	120165;120166;120167;120168;120169;120170;120171;120172;120173;120174;120175	120174			11	
EYDRLLEEHAK	1	Unmodified	1401.6888	0.6888432	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	28.155	28.125	2;3	0.0020979	23490	160511_QHF_FH_JSI12i_3	76.143	48.814			1.0075	0.89852	6.7448	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0305	0.95908	NaN	1	0	Median	0.94299	0.95635	9.5358	2	0	Median	342590000	166890000	175700000	0	0	0	0	0	0	97724000	49688000	48036000	244860000	117200000	127660000	14740	1741	13982	88970;88971;88972	120176;120177;120178	120177			3	
EYDSISR	0	Unmodified	868.39266	0.39266118	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		13.083	12.9	2	0.025376	10391	160511_QHF_FH_JSI11i_1	54.611	21.254			0.53187	0.56705	23.919	2	0	Median	NaN	NaN	NaN	0	0	Median	0.57144	0.67155	NaN	1	0	Median	0.49504	0.47881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	332080000	208760000	123310000	0	0	0	171610000	109870000	61742000	160470000	98897000	61571000	0	0	0	14741	1838	13983	88973;88974	120179;120180	120179			2	
EYDVAVQAIK	1	Unmodified	1134.5921	0.59208927	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.483	47.803	2	2.5004E-05	43355	160511_QHF_FH_JSI12i_1	106.6	78.381			0.81647	0.74873	21.09	4	1	Median	0.85247	0.68918	NaN	1	0	Median	0.4806	0.56207	NaN	1	0	Median	0.9343	0.91317	NaN	1	0	Median	0.782	0.81342	NaN	1	1	Median	306830000	158650000	148180000	68923000	39388000	29535000	87797000	50628000	37169000	55431000	16152000	39278000	94679000	52485000	42194000	14742	3521	13984	88975;88976;88977;88978	120181;120182;120183;120184;120185	120182			5	
EYEAAVEQLK	1	Unmodified	1178.5819	0.58191851	2957	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	2	3	2	43.079	39.545	2	8.8546E-05	35770	160511_QHF_FH_JSI12i_1	85.716	52.32			0.95519	0.95006	48.043	9	4	Median	0.63007	0.51629	59.968	2	2	Median	1.0668	1.2626	32.446	2	1	Median	0.95519	0.95006	28.94	3	1	Median	0.80221	0.87465	51.695	2	0	Median	1178200000	635220000	543010000	213760000	125470000	88290000	271050000	161750000	109300000	400470000	192400000	208070000	292950000	155600000	137350000	14743	2957	13985	88979;88980;88981;88982;88983;88984;88985;88986;88987	120186;120187;120188;120189;120190;120191;120192;120193;120194;120195	120187			9	
EYEAEGIAK	1	Unmodified	1008.4764	0.47639081	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	22.415	21.881	2	0.00226	18637	160511_QHF_FH_JSI9i_1	65.465	42.423			0.68824	0.70506	20.463	4	1	Median	0.94254	0.77907	NaN	1	0	Median	0.53099	0.63809	NaN	1	0	Median	0.88068	0.86774	NaN	1	0	Median	0.53785	0.54849	NaN	1	1	Median	521270000	309390000	211880000	140900000	83554000	57347000	126750000	81867000	44888000	137020000	74775000	62242000	116590000	69190000	47404000	14744	4852	13986	88988;88989;88990;88991	120196;120197;120198	120198			3	
EYEAEGIAKDGAK	2	Acetyl (K)	1421.6674	0.66743906	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		43.85	34.692	2	5.0917E-05	19636	160513_QHF_FH_JSI11Kac_3	95.401	67.002			0.84006	0.9204	30.504	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96977	1.142	NaN	1	0	Median	0.72771	0.74183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9432000	5509000	3923000	0	0	0	3509700	1774300	1735400	5922300	3734800	2187500	0	0	0	14745	4852	13987	88992;88993	120199;120200	120199	3253		2	
EYEAQQQYR	0	Unmodified	1213.5364	0.53636531	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	13.381	12.944	2	0.00017392	10636	160511_QHF_FH_JSI12i_1	87.251	82.468			0.92302	0.91936	5.9382	4	1	Linear	1.2401	1.0215	NaN	1	1	Median	0.84578	0.98858	NaN	1	0	Median	0.93283	0.89083	NaN	1	0	Median	0.91332	0.94431	NaN	1	0	Median	198150000	111140000	87005000	54157000	27080000	27076000	40957000	24802000	16155000	51552000	26822000	24730000	51482000	32438000	19044000	14746	5014	13988	88994;88995;88996;88997	120201;120202;120203	120201			3	
EYEEDGAR	0	Unmodified	967.3883	0.38830408	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.7996	6.4639	2	0.0012164	4393	160511_QHF_FH_JSI12i_1	92.47	76.316			1.2753	1.1693	34.679	4	0	Median	1.2512	1.0543	NaN	1	0	Median	1.9073	2.2171	NaN	1	0	Median	1.2998	1.2662	NaN	1	0	Median	1.0358	1.0799	NaN	1	0	Median	421920000	188570000	233360000	64439000	29808000	34631000	104370000	32588000	71787000	99424000	45997000	53427000	153680000	80174000	73510000	14747	1941	13989	88998;88999;89000;89001	120204;120205	120205			2	
EYEEEERKK	2	Unmodified	1238.5779	0.57789577	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	2	By matching	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	5.3594	5.1171	3	0.001454	2853	160511_QHF_FH_JSI11i_3	70.1	46.351			0.582	0.70524	27.987	3	0	Plateau	1.3935	1.2219	NaN	1	0	Median	0.582	0.7	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91846	0.96929	NaN	1	0	Median	181810000	100310000	81497000	48652000	21755000	26897000	74117000	46669000	27448000	0	0	0	59037000	31886000	27151000	14748	2738	13990	89002;89003;89004;89005	120206;120207	120206			2	
EYEGYEVESSLK	1	Unmodified	1431.6406	0.64055561	4195	Q96PC5;Q96RT6	MIA2;CTAGE1	Melanoma inhibitory activity protein 2;cTAGE family member 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	46.019	45.342	2	7.4633E-05	40814	160511_QHF_FH_JSI10i_1	94.465	84.461			1.1812	1.2688	31.392	4	1	Median	1.936	1.5679	NaN	1	0	Median	0.96344	1.1667	NaN	1	0	Median	1.4481	1.38	NaN	1	1	Median	0.73722	0.76288	NaN	1	0	Median	334380000	152510000	181870000	50675000	14811000	35865000	80577000	40611000	39965000	107780000	44671000	63105000	95349000	52418000	42931000	14749	4195	13991	89006;89007;89008;89009	120208;120209;120210	120209			3	
EYELLSDELNQK	1	Unmodified	1479.7093	0.70930387	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.721	63.096	2	5.838E-24	56104	160511_QHF_FH_JSI9i_1	182.92	142.99			1.4197	1.1532	15.725	4	1	Linear	1.3587	1.0999	NaN	1	0	Median	0.7316	0.87191	NaN	1	1	Median	1.2348	1.2244	NaN	1	0	Median	1.157	1.2091	NaN	1	0	Median	774600000	363560000	411040000	230190000	108200000	121990000	188580000	105450000	83128000	200910000	78482000	122430000	154920000	71432000	83490000	14750	1400	13992	89010;89011;89012;89013	120211;120212;120213;120214;120215	120215			5	
EYENELAK	1	Unmodified	994.46074	0.46074075	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	21.355	18.814	2	0.0018537	15842	160511_QHF_FH_JSI9i_1	84.498	50.701			0.97278	0.97831	32.413	7	2	Median	1.1849	0.98642	NaN	1	0	Median	0.80149	0.93883	0.47116	2	0	Median	1.0106	1.003	3.5309	2	0	Median	1.342	1.4059	65.697	2	2	Median	827460000	386760000	440710000	142820000	62454000	80369000	212480000	125320000	87158000	179010000	74883000	104120000	293150000	124100000	169060000	14751	1085	13993	89014;89015;89016;89017;89018;89019;89020	120216;120217;120218;120219;120220;120221;120222	120221			7	
EYENIIALQENELK	1	Unmodified	1704.857	0.85703074	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	2		1	73.273	72.714	2	1.2311E-10	65723	160511_QHF_FH_JSI10i_1	114.72	79.833			0.47718	0.61186	17.328	3	3	Plateau	0.75291	0.61186	NaN	1	1	Median	0.4485	0.53128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70693	0.74994	NaN	1	1	Median	131190000	85801000	45393000	35282000	21726000	13556000	53054000	36196000	16858000	0	0	0	42858000	27880000	14979000	14752	2100	13994	89021;89022;89023;89024;89025	120223;120224;120225;120226;120227	120225			5	
EYEPEMGK	1	Unmodified	981.41135	0.41134771	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.605	20.09	2	0.0013515	17100	160511_QHF_FH_JSI11i_1	98.299	87.23			0.94123	1.0407	12.693	4	0	Median	1.3735	1.1203	NaN	1	0	Median	0.95136	1.1322	NaN	1	0	Median	0.8776	0.86854	NaN	1	0	Median	0.93121	0.96677	NaN	1	0	Median	1753600000	863990000	889570000	381930000	164510000	217410000	419670000	222780000	196890000	438420000	215070000	223350000	513530000	261620000	251910000	14753	1103	13995	89026;89027;89028;89029	120228;120229;120230;120231;120232;120233	120228			6	
EYEQELSDDLHVER	0	Unmodified	1760.7853	0.78532236	3295	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	49.878	49.338	3	0.045498	44838	160511_QHF_FH_JSI12i_1	28.549	28.094			1.1819	1.1841	9.1277	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1366	1.1101	NaN	1	0	Median	1.229	1.2631	NaN	1	0	Median	135370000	71111000	64262000	0	0	0	0	0	0	54571000	31266000	23305000	80803000	39845000	40958000	14754	3295	13996	89030;89031	120234	120234			0	
EYERENVDTFEASVK	1	Unmodified	1814.8323	0.83227255	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	1	By matching		By MS/MS		2	0		2								1		1		43.409	42.642	3	0.0038461	36734	160511_QHF_FH_JSI11i_2	48.423	42.006			0.98635	0.90397	36.612	2	0	Median	1.3872	1.1711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70132	0.69778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94761000	48736000	46025000	40729000	15254000	25475000	0	0	0	54032000	33482000	20550000	0	0	0	14755	2432	13997	89032;89033	120235	120235			1	
EYFDQHFGPFFR	0	Unmodified	1588.7099	0.709913	248	O15118	NPC1	Niemann-Pick C1 protein	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	78.221	77.674	3	0.0043926	67339	160511_QHF_FH_JSI12i_3	42.425	40.063			1.0215	0.93546	13.03	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76764	0.93546	NaN	1	0	Median	1.1956	1.1376	NaN	1	0	Median	0.87271	0.88868	NaN	1	0	Median	76320000	39657000	36664000	0	0	0	6556700	3697500	2859300	36269000	17103000	19165000	33495000	18856000	14639000	14756	248	13998	89034;89035;89036	120236	120236			1	
EYFESWGESGEK	1	Unmodified	1446.5939	0.59393976	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	49.916	49.415	2	8.7202E-05	44483	160511_QHF_FH_JSI10i_1	104.82	89.252			1.0441	1.1297	45.899	6	6	Median	NaN	NaN	NaN	0	0	Median	0.75922	0.87056	71.694	2	2	Median	1.2709	1.2236	55.95	2	2	Median	1.0685	1.1297	31.554	2	2	Median	253460000	120260000	133200000	0	0	0	75877000	45042000	30835000	82084000	29910000	52174000	95499000	45310000	50190000	14757	2771	13999	89037;89038;89039;89040;89041;89042	120237;120238;120239;120240;120241;120242	120241			6	
EYFGAFGEIENIELPMDTK	1	Unmodified	2202.0191	0.019087047	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		27.847	27.205	4	0.059657	23756	160511_QHF_FH_JSI10i_2	13.427	8.8097			0.995	1.0982	6.1092	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87738	1.0518	NaN	1	0	Median	1.1284	1.1467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	333530000	163320000	170210000	0	0	0	152410000	81077000	71330000	181120000	82244000	98875000	0	0	0	14758	230	14000	89043;89044	120243;120244	120244			2	
EYFQKVNQ	1	Acetyl (K)	1096.5189	0.51892433	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	1	2	51.974	42.642	2	0.0023819	17468	160513_QHF_FH_JSI10Kac_1	97.798	87.811			0.74127	0.786	38.597	5	0	Median	NaN	NaN	NaN	0	0	Median	0.91914	1.0734	0.10943	2	0	Median	0.43598	0.42054	NaN	1	0	Median	0.70326	0.74197	8.1512	2	0	Median	81778000	48628000	33150000	0	0	0	29177000	15255000	13922000	28106000	18441000	9664700	24496000	14932000	9563500	14759	1338	14001	89045;89046;89047;89048;89049	120245;120246;120247;120248;120249	120248	1265		5	
EYFSKHN	1	Acetyl (K)	965.4243	0.42429566	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.687						2	3	1			2	3	1	31.384	22.3	2	3.3735E-05	13455	160513_QHF_FH_JSI10Kac_4	130.04	110.56			0.36788	0.38141	195.18	6	1	Median	NaN	NaN	NaN	0	0	Median	1.2221	1.4603	11.22	2	0	Median	0.0081986	0.0081065	218.25	3	1	Plateau	0.4169	0.45258	NaN	1	0	Median	506210000	419860000	86346000	0	0	0	106890000	49205000	57684000	341380000	328250000	13129000	57946000	42413000	15533000	14760	1390	14002	89050;89051;89052;89053;89054;89055	120250;120251;120252;120253	120250	1346		4	
EYFSKQK	2	Acetyl (K)	970.476	0.47599688	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.7						1	3	3			2	3	2	32.618	23.382	2	5.1513E-07	14451	160513_QHF_FH_JSI12Kac_4	134.66	108.55			0.43285	0.46879	59.963	7	0	Median	NaN	NaN	NaN	0	0	Median	1.1267	1.3349	11.233	2	0	Median	0.37978	0.37482	7.8765	3	0	Median	0.43671	0.48263	4.1139	2	0	Median	897940000	624300000	273640000	0	0	0	164760000	82439000	82322000	624240000	466040000	158200000	108940000	75821000	33120000	14761	2249	14003	89056;89057;89058;89059;89060;89061;89062	120254;120255;120256;120257;120258;120259;120260	120260	2346		7	
EYFSWEGAFQHVGK	1	Unmodified	1683.7682	0.76815616	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.87		14	13						9	11	9	9	7	76.503	73.928	2;3	1.3216E-153	37561	160513_QHF_FH_JSI9Kac_6	298.58	288.53			0.98702	1.0049	27.998	32	7	Median	1.2655	1.0603	23.723	11	5	Median	0.88314	1.0344	40.751	7	2	Median	0.97611	0.93736	29.395	9	0	Median	0.82759	1.0648	13.838	5	0	Linear	9090400000	4780200000	4310200000	1328500000	615140000	713400000	2856100000	1570500000	1285600000	3485700000	1941200000	1544500000	1420100000	653360000	766700000	14762	1284	14004	89063;89064;89065;89066;89067;89068;89069;89070;89071;89072;89073;89074;89075;89076;89077;89078;89079;89080;89081;89082;89083;89084;89085;89086;89087;89088;89089;89090;89091;89092;89093;89094;89095;89096;89097;89098	120261;120262;120263;120264;120265;120266;120267;120268;120269;120270;120271;120272;120273;120274;120275;120276;120277;120278;120279;120280;120281;120282;120283;120284;120285;120286;120287;120288;120289;120290;120291;120292;120293;120294;120295;120296;120297;120298;120299;120300;120301;120302;120303;120304;120305;120306;120307;120308;120309;120310;120311;120312;120313;120314;120315;120316;120317;120318;120319;120320;120321;120322;120323;120324;120325;120326;120327;120328;120329;120330;120331;120332;120333;120334;120335;120336;120337	120325			75	
EYFSWEGAFQHVGKAFNQGK	2	Acetyl (K)	2371.1022	0.10218025	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			85.828	80.127	3	1.1138E-16	44955	160513_QHF_FH_JSI10Kac_6	181.64	158.99			0.45721	0.53657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45721	0.53657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62030000	53428000	8601700	0	0	0	62030000	53428000	8601700	0	0	0	0	0	0	14763	1284	14005	89099	120338	120338	1206;1207		1	
EYGAGSSR	0	Unmodified	825.3617	0.3616954	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.0815	4.8529	2	0.0226	2792	160511_QHF_FH_JSI10i_1	43.808	28.369			0.92633	0.95981	10.674	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73234	0.86033	NaN	1	0	Median	1.1023	1.065	NaN	1	0	Median	0.92633	0.95981	NaN	1	0	Median	279840000	152070000	127770000	0	0	0	96674000	60336000	36338000	80339000	41120000	39219000	102820000	50613000	52210000	14764	1194	14006	89100;89101;89102	120339	120339			1	
EYGEQIDPSTHR	0	Unmodified	1430.6426	0.64262129	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	21.018	20.819	2;3	0.0017299	18261	160511_QHF_FH_JSI12i_1	62.466	50.419			0.76527	0.80515	9.7508	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64732	0.7515	NaN	1	0	Median	0.90472	0.86262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143260000	74579000	68677000	0	0	0	70697000	38173000	32524000	72558000	36406000	36153000	0	0	0	14765	5508	14007	89103;89104;89105;89106	120340;120341;120342;120343	120341			4	
EYGEQIDPSTHRK	1	Unmodified	1558.7376	0.73758431	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	2	4	3	15.916	15.686	2;3;4	3.8822E-06	12620	160511_QHF_FH_JSI11i_3	122.66	112.18			0.95823	0.97575	20.604	10	0	Median	1.2606	1.0962	NaN	1	0	Median	1.0112	1.284	41.315	2	0	Median	0.9341	0.87464	13.311	4	0	Median	0.97931	0.99305	6.7785	3	0	Median	1195600000	654160000	541460000	58041000	26167000	31874000	118210000	72216000	45998000	665570000	358820000	306760000	353790000	196960000	156830000	14766	5508	14008	89107;89108;89109;89110;89111;89112;89113;89114;89115;89116	120344;120345;120346;120347;120348;120349;120350;120351;120352;120353;120354;120355;120356;120357;120358	120345			14	
EYGGLDVLVNNAGIAFK	1	Unmodified	1778.9203	0.9202997	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.611	7	7	1							3	4	4	4	100.78	100.66	2;3	6.9734E-237	88406	160511_QHF_FH_JSI9i_2	347.25	321.24			0.85211	0.91941	15.353	15	0	Median	0.99582	0.84326	13.766	3	0	Median	0.73928	0.87844	11.423	4	0	Median	0.8954	0.88733	18.614	4	0	Median	0.96582	1.0554	16.5	4	0	Median	2198400000	1171900000	1026400000	267160000	140850000	126310000	424430000	253120000	171320000	722500000	359970000	362540000	784290000	418020000	366280000	14767	1092	14009	89117;89118;89119;89120;89121;89122;89123;89124;89125;89126;89127;89128;89129;89130;89131	120359;120360;120361;120362;120363;120364;120365;120366;120367;120368;120369;120370;120371;120372;120373;120374;120375;120376;120377;120378;120379;120380;120381	120375			21	
EYGGLNVLVNNAAVAFK	1	Unmodified	1777.9363	0.93628412	572	O75828	CBR3	Carbonyl reductase [NADPH] 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		97.897	97.68	2	0.0046677	85830	160511_QHF_FH_JSI11i_2	63.727	16.847			0.66872	0.66679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66872	0.66679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25719000	14983000	10736000	0	0	0	0	0	0	25719000	14983000	10736000	0	0	0	14768	572	14010	89132	120382	120382			1	
EYGMIYLGK	1	Unmodified	1072.5263	0.52631789	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.69	4	4					3	5	2	4	5	4	5	65.778	59.421	2	5.9562E-05	31917	160513_QHF_FH_JSI11Kac_5	119.17	93.279			1.078	0.99906	29.345	17	6	Median	1.329	1.1282	17.216	4	2	Median	0.85107	0.99281	25.492	5	2	Median	1.3639	1.3455	36.741	3	1	Median	0.91958	0.96578	39.424	5	1	Median	1807900000	930070000	877810000	420810000	167790000	253020000	610200000	338140000	272060000	247400000	130990000	116410000	529460000	293140000	236320000	14769	3213	14011	89133;89134;89135;89136;89137;89138;89139;89140;89141;89142;89143;89144;89145;89146;89147;89148;89149;89150	120383;120384;120385;120386;120387;120388;120389;120390;120391;120392;120393;120394;120395;120396;120397;120398;120399;120400;120401;120402;120403	120397			21	
EYGMIYLGK	1	Oxidation (M)	1088.5212	0.52123251	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	2	1	55.151	44.427	2	0.0020551	24401	160513_QHF_FH_JSI11Kac_5	77.282	65.514			0.93343	0.99708	13.805	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81243	0.94712	NaN	1	0	Median	1.0749	1.0564	0.91044	2	0	Median	0.70674	0.78863	NaN	1	0	Median	53346000	25070000	28276000	0	0	0	10232000	4778700	5453400	36114000	16746000	19368000	6999600	3544600	3455000	14770	3213	14011	89151;89152;89153;89154	120404;120405;120406;120407	120407		2217	4	
EYHTDTTVK	1	Unmodified	1092.5088	0.50875357	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	9.1725	8.7592	2	0.00023439	6369	160511_QHF_FH_JSI11i_2	99.442	66.971			0.77082	0.85612	54.574	5	4	Median	1.2676	1.1115	NaN	1	1	Median	0.56789	0.67005	NaN	1	1	Median	1.0668	1.0609	100.54	2	2	Median	0.77082	0.85612	NaN	1	0	Median	154220000	75523000	78698000	17639000	10287000	7352300	17404000	12118000	5285600	82484000	34733000	47751000	36694000	18385000	18309000	14771	999;2197	14012	89155;89156;89157;89158;89159	120408;120409;120410;120411;120412;120413	120411			6	
EYIEIITSSIKK	2	Unmodified	1422.797	0.79699667	3768	Q8WUW1	BRK1	Protein BRICK1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.742	65.448	3	0.0026184	56550	160511_QHF_FH_JSI12i_3	55.196	49.703			1.9072	1.8713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9072	1.8713	NaN	1	1	Median	45516000	21214000	24302000	0	0	0	0	0	0	0	0	0	45516000	21214000	24302000	14772	3768	14013	89160	120414	120414			1	
EYIIEGFENMPAAFMGMLK	1	Unmodified	2190.02	0.019955445	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		4									1	2	1	102.8	102.69	2;3	8.3978E-184	90490	160511_QHF_FH_JSI11i_2	310.29	246.89			1.1155	1.1256	37.857	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70006	0.86558	NaN	1	0	Median	1.1155	1.1256	0.51391	2	0	Median	1.9252	2.1091	NaN	1	0	Median	275840000	145060000	130780000	0	0	0	24660000	15819000	8841300	228780000	119150000	109630000	22396000	10091000	12305000	14773	2581	14014	89161;89162;89163;89164	120415;120416;120417;120418;120419;120420	120419			6	
EYIPGQPPLSQSSDSSPTR	0	Unmodified	2044.9702	0.97016302	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	50.165	49.49	2	1.2716E-32	44949	160511_QHF_FH_JSI11i_1	192.65	179.88			1.0939	1.1168	3.9464	4	0	Median	1.4372	1.1858	NaN	1	0	Median	0.96019	1.1285	NaN	1	0	Median	1.1284	1.0813	NaN	1	0	Median	1.0606	1.1052	NaN	1	0	Median	608730000	291930000	316790000	155890000	66396000	89491000	141700000	74040000	67663000	156220000	78893000	77325000	154920000	72606000	82313000	14774	878	14015	89165;89166;89167;89168;89169	120421;120422;120423;120424;120425;120426;120427;120428;120429;120430;120431;120432;120433;120434;120435	120424			15	
EYIPTVFDNYSAQSAVDGR	0	Unmodified	2130.9858	0.98581308	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	79.108	78.637	2;3	7.1085E-11	71693	160511_QHF_FH_JSI12i_1	166.09	151.83			1.1022	1.0432	11.639	8	0	Median	1.2378	1.0183	5.1178	2	0	Median	0.88728	1.0179	1.9087	2	0	Median	1.2571	1.1932	3.2779	2	0	Median	0.91641	0.93548	16.969	2	0	Median	396410000	180240000	216170000	81012000	33190000	47821000	91502000	43398000	48104000	103030000	43300000	59726000	120870000	60356000	60517000	14775	2128	14016	89170;89171;89172;89173;89174;89175;89176;89177;89178	120436;120437;120438;120439;120440;120441;120442;120443;120444;120445;120446;120447;120448;120449;120450;120451;120452	120441			17	
EYIQILER	0	Unmodified	1062.571	0.5709599	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.711	55.768	2	0.0020108	48841	160511_QHF_FH_JSI9i_2	83.313	31.978			0.79981	0.89944	13.689	4	0	Median	1.1461	0.97247	NaN	1	0	Median	0.67426	0.84627	NaN	1	0	Median	0.94874	0.95595	NaN	1	0	Median	0.65171	0.72314	NaN	1	0	Median	383950000	200760000	183190000	70849000	31241000	39609000	105920000	64363000	41555000	128980000	59390000	69593000	78203000	45770000	32433000	14776	1790	14017	89179;89180;89181;89182	120453;120454;120455;120456	120453			4	
EYITPAQISK	1	Unmodified	1148.6077	0.60773933	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.286	41.637	2	0.017066	37622	160511_QHF_FH_JSI11i_1	66.568	45.666			0.70031	0.69366	10.143	4	0	Median	0.79579	0.65052	NaN	1	0	Median	0.63892	0.73966	NaN	1	0	Median	0.76759	0.75696	NaN	1	0	Median	0.6074	0.61289	NaN	1	0	Median	381650000	239690000	141960000	61577000	37377000	24200000	86475000	58679000	27796000	103550000	63008000	40537000	130060000	80628000	49428000	14777	615	14018	89183;89184;89185;89186	120457;120458	120457			0	
EYITPFIRPVMQALLHIIR	0	Unmodified	2309.3082	0.30821404	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.819	93.098	4	4.7449E-71	54476	160513_QHF_FH_JSI10Kac_6	209.73	197.77			0.80098	0.95709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80098	0.95709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	648110000	366530000	281580000	0	0	0	648110000	366530000	281580000	0	0	0	0	0	0	14778	686	14019	89187	120459	120459			1	
EYIVGLSVETERK	1	Unmodified	1521.8039	0.80387296	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.29	0.452		5	2								1	1	5	52.759	51.976	2;3	0.0023862	44632	160511_QHF_FH_JSI12i_2	60.434	45.168			1.1268	1.1303	37.219	6	2	Median	NaN	NaN	NaN	0	0	Median	0.71943	0.87585	NaN	1	0	Median	0.96968	0.96969	NaN	1	0	Median	1.3505	1.4443	40.481	4	2	Median	717950000	314010000	403940000	0	0	0	42012000	25052000	16959000	52863000	21190000	31673000	623080000	267770000	355310000	14779	1805	14020	89188;89189;89190;89191;89192;89193;89194	120460;120461;120462;120463;120464	120461			4	
EYLDNVQLGHILER	0	Unmodified	1697.8737	0.87368386	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	73.173	72.635	2;3	3.8801E-17	63696	160511_QHF_FH_JSI11i_2	133.71	110.79			1.0176	1.051	6.9638	9	0	Median	1.2287	1.0519	NaN	1	0	Median	0.87184	1.0824	4.7334	2	0	Median	1.0176	0.96441	9.5212	3	0	Plateau	1.0236	1.051	8.5135	3	0	Median	1112600000	576060000	536570000	111420000	53176000	58241000	201180000	102490000	98685000	399940000	205750000	194190000	400100000	214650000	185460000	14780	1304	14021	89195;89196;89197;89198;89199;89200;89201;89202;89203;89204	120465;120466;120467;120468;120469;120470;120471;120472;120473;120474;120475;120476;120477;120478;120479;120480	120474			16	
EYLEAEENGDLER	0	Unmodified	1565.6845	0.68454569	4026	Q96DF8	DGCR14	Protein DGCR14	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.702	39.399	2	4.3806E-05	35517	160511_QHF_FH_JSI11i_1	78.908	70.683			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14781	4026	14022	89205	120481	120481			1	
EYLELEK	1	Unmodified	922.46476	0.46476349	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	40.364	39.648	2	0.023841	34971	160511_QHF_FH_JSI9i_1	58.815	11.072			1.0498	1.0014	21.742	3	0	Plateau	1.8047	1.4871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0498	1.0014	NaN	1	0	Median	1.0039	1.0433	NaN	1	0	Median	261050000	121200000	139850000	58131000	22340000	35792000	0	0	0	108110000	46733000	61382000	94801000	52124000	42677000	14782	637	14023	89206;89207;89208	120482;120483;120484;120485;120486	120485			5	
EYLLGSTAEEK	1	Unmodified	1238.603	0.60304789	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.21	5					3	2			1	2	3	4	44.08	38.971	2	2.1575E-09	35465	160511_QHF_FH_JSI12i_1	130.98	116.31			0.9257	0.95286	18.339	10	5	Median	1.2331	0.98683	NaN	1	0	Median	0.79245	0.93319	0.6811	2	1	Median	0.99397	0.96828	18.256	3	2	Median	0.89119	0.95717	26.625	4	2	Median	1728100000	777770000	950290000	252190000	113180000	139010000	356910000	191720000	165190000	782740000	320920000	461820000	336220000	151950000	184270000	14783	323	14024	89209;89210;89211;89212;89213;89214;89215;89216;89217;89218	120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501;120502	120491			16	
EYLPFLNTLK	1	Unmodified	1236.6754	0.67542497	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		91.121	90.696	2	7.8464E-05	80441	160511_QHF_FH_JSI10i_2	102.07	85.527			0.91777	1.0216	52.946	4	4	Median	0.77237	0.66073	79.192	2	2	Median	0.9198	1.1396	NaN	1	1	Median	0.91575	0.91585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	243980000	136570000	107420000	95937000	53073000	42864000	59758000	34705000	25052000	88290000	48788000	39502000	0	0	0	14784	648	14025	89219;89220;89221;89222	120503;120504;120505;120506	120506			4	
EYLPIGGLAEFCK	1	Unmodified	1495.7381	0.73810158	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	89.179	88.755	2	2.3707E-06	78020	160511_QHF_FH_JSI11i_2	121.08	95.033			1.0998	1.1886	22.548	8	7	Median	1.599	1.3362	NaN	1	1	Median	1.0835	1.2582	28.655	3	3	Median	1.0016	0.96242	5.5538	2	1	Median	1.2565	1.3342	24.389	2	2	Median	738610000	345140000	393470000	67940000	22642000	45298000	256490000	124600000	131890000	272160000	135990000	136170000	142020000	61907000	80109000	14785	773	14026	89223;89224;89225;89226;89227;89228;89229;89230;89231;89232;89233	120507;120508;120509;120510;120511;120512;120513;120514;120515;120516;120517;120518;120519;120520;120521	120518			15	
EYLSADAFK	1	Unmodified	1042.4971	0.49712625	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	49.432	48.889	2	0.00057148	44082	160511_QHF_FH_JSI10i_1	78.192	56.892			0.75224	0.8294	23.404	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6023	0.70289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93951	0.97866	NaN	1	0	Median	111390000	68140000	43247000	0	0	0	47921000	28020000	19901000	0	0	0	63466000	40120000	23346000	14786	5142	14027	89234;89235	120522;120523	120523			2	
EYLSEEVQAVHK	1	Unmodified	1430.7042	0.70415892	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	39.779	38.414	2;3	7.1982E-12	32769	160511_QHF_FH_JSI12i_2	129.84	123.56			1.0392	1.1395	19.832	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0392	1.1395	19.832	2	0	Median	148000000	69132000	78869000	0	0	0	0	0	0	0	0	0	148000000	69132000	78869000	14787	2856	14028	89236;89237	120524;120525;120526	120524			3	
EYLTSHLEIR	0	Unmodified	1259.651	0.65100113	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		55.958	46.496	3	0.00035852	24628	160513_QHF_FH_JSI9Kac_6	68.069	58.636			1.1105	1.0083	5.3914	2	0	Median	1.1275	0.97061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0938	1.0475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27504000	14157000	13347000	8969000	4482900	4486200	0	0	0	18535000	9673900	8861200	0	0	0	14788	5507	14029	89238;89239	120527;120528	120528			2	
EYLTTLGQR	0	Unmodified	1079.5611	0.56112349	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	39.57	38.661	2	0.0023906	32997	160511_QHF_FH_JSI12i_2	74.301	59.634			0.98831	1.0163	30.984	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2828	1.2653	NaN	1	1	Median	0.7614	0.81636	NaN	1	1	Median	94832000	47779000	47053000	0	0	0	0	0	0	50178000	22390000	27788000	44654000	25389000	19265000	14789	3221	14030	89240;89241;89242	120529;120530;120531	120529			3	
EYNALHQR	0	Unmodified	1029.4992	0.49919194	404	O60271;Q9UPT6	SPAG9;MAPK8IP3	C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		10.148	9.7428	2	0.019171	7235	160511_QHF_FH_JSI11i_2	46.994	34.006			2.0069	1.7162	19.993	3	1	Plateau	2.0326	1.7548	NaN	1	0	Median	0.96991	1.1779	NaN	1	1	Median	1.4397	1.3997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64452000	29868000	34584000	23802000	10524000	13278000	23010000	11712000	11298000	17640000	7631900	10008000	0	0	0	14790	404	14031	89243;89244;89245	120532;120533	120532			2	
EYNEDEDPAAR	0	Unmodified	1307.5266	0.52658848	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.264	14.699	2	2.1079E-05	12357	160511_QHF_FH_JSI12i_1	102.52	98.823			1.3121	1.5411	36.852	3	0	Plateau	0.99979	0.82486	NaN	1	0	Median	1.3121	1.5548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76897	0.81772	NaN	1	0	Median	147120000	81606000	65510000	46495000	26484000	20011000	55721000	31174000	24548000	0	0	0	44900000	23948000	20952000	14791	2353	14032	89246;89247;89248;89249	120534;120535;120536;120537;120538;120539	120536			6	
EYNEFAEVFLK	1	Unmodified	1387.666	0.66598249	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							4	3	2	2	88.042	87.339	2	4.7992E-23	79489	160511_QHF_FH_JSI10i_1	172.27	156.39			0.88787	0.96451	17.176	11	4	Median	0.94048	0.80123	26.736	4	3	Median	0.88265	1.0278	2.6688	3	1	Median	0.9235	0.91888	6.8534	2	0	Median	0.90628	0.96733	2.2018	2	0	Median	786400000	413770000	372630000	150550000	71179000	79368000	208390000	112080000	96313000	215060000	108000000	107070000	212390000	122510000	89878000	14792	686	14033	89250;89251;89252;89253;89254;89255;89256;89257;89258;89259;89260	120540;120541;120542;120543;120544;120545;120546;120547;120548;120549;120550;120551;120552;120553;120554;120555;120556;120557;120558;120559;120560;120561;120562;120563;120564;120565;120566	120553			27	
EYNLNFSGSSTIQEVK	1	Unmodified	1814.8687	0.86865806	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.094	65.494	2	4.7271E-15	59517	160511_QHF_FH_JSI11i_1	159.52	129.31			0.78804	1.0273	20.59	4	1	Linear	0.87879	0.71411	NaN	1	0	Median	0.70342	0.83638	NaN	1	0	Median	1.1738	1.1174	NaN	1	0	Median	0.70666	0.73054	NaN	1	1	Median	167360000	98612000	68745000	26762000	12440000	14322000	44989000	28688000	16302000	48964000	29163000	19801000	46642000	28320000	18321000	14793	5442	14034	89261;89262;89263;89264	120567;120568;120569;120570;120571;120572;120573;120574	120569			8	
EYPFILDAFQR	0	Unmodified	1397.698	0.69795133	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	98.619	98.436	2	5.9698E-06	86305	160511_QHF_FH_JSI11i_2	110.47	95.323			0.97177	0.89812	23.511	5	2	Median	1.0443	0.89812	NaN	1	0	Median	0.72746	0.88415	NaN	1	0	Median	0.97177	0.97737	NaN	1	0	Median	0.7557	0.83026	45.048	2	2	Median	227750000	128550000	99202000	37314000	17567000	19748000	42050000	23329000	18722000	74536000	42975000	31560000	73854000	44682000	29172000	14794	1532	14035	89265;89266;89267;89268;89269	120575;120576;120577;120578;120579;120580;120581	120580			7	
EYPSEQIIVTEK	1	Unmodified	1434.7242	0.72422566	4489	Q9BW61	DDA1	DET1- and DDB1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.832	51.16	2	0.00075118	46222	160511_QHF_FH_JSI11i_1	78.653	63.387			0.46595	0.42418	17.334	4	4	Median	0.54879	0.45385	NaN	1	1	Median	0.31825	0.3731	NaN	1	1	Median	0.40159	0.39644	NaN	1	1	Median	0.54062	0.55166	NaN	1	1	Median	370180000	263030000	107150000	85169000	57780000	27389000	107470000	80654000	26820000	93692000	71175000	22517000	83844000	53425000	30419000	14795	4489	14036	89270;89271;89272;89273	120582;120583;120584;120585	120582			4	
EYQAAYGK	1	Unmodified	928.42905	0.42904669	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	18.007	10.999	2	0.02786	7684	160513_QHF_FH_JSI12Kac_3	50.966	32.235			1.0689	1.1732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0689	1.1732	NaN	1	0	Median	2305900	1049100	1256900	0	0	0	0	0	0	0	0	0	2305900	1049100	1256900	14796	1018	14037	89274	120586	120586			1	
EYQDAFLFNELK	1	Unmodified	1515.7246	0.72456001	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	85.25	84.711	2;3	3.2439E-53	73199	160511_QHF_FH_JSI12i_2	218.18	165.7			1.0222	1.0147	20.526	12	0	Median	1.0117	0.85677	41.152	3	0	Plateau	0.85353	0.99554	18.418	3	0	Median	1.0268	1.0185	1.6631	3	0	Plateau	0.97059	1.0735	7.5584	3	0	Plateau	1385500000	672110000	713430000	220740000	95184000	125560000	355580000	173330000	182250000	395760000	198650000	197110000	413460000	204940000	208520000	14797	5487	14038	89275;89276;89277;89278;89279;89280;89281;89282;89283;89284;89285;89286	120587;120588;120589;120590;120591;120592;120593;120594;120595;120596;120597;120598;120599;120600;120601;120602;120603;120604;120605;120606;120607;120608;120609;120610;120611;120612;120613;120614;120615;120616	120593			30	
EYQDLLNVK	1	Unmodified	1120.5764	0.57643921	913	P08670;P17661;P12036	VIM;DES;NEFH	Vimentin;Desmin;Neurofilament heavy polypeptide	no	no	0	0	0	0	By MS/MS			By MS/MS	7.5	6.5	1						1			1			1	58.068	52.123	2	2.8574E-06	46619	160511_QHF_FH_JSI9i_1	124.98	92.143			0.7528	0.70353	6.8192	2	0	Median	0.90716	0.73828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6247	0.67041	NaN	1	0	Median	290870000	192290000	98581000	286070000	189540000	96526000	0	0	0	0	0	0	4800600	2745400	2055200	14798	913	14039	89287;89288	120617;120618	120617			2	
EYQELMNVK	1	Unmodified	1152.5485	0.5485099	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.97	5	3				2	3			3	3	3	4	46.958	42.518	2	4.0386E-15	38272	160511_QHF_FH_JSI11i_1	190.51	139.55		+	3.341	3.3918	114.44	13	12	Median	4.0879	3.3918	143.04	3	2	Median	1.0474	1.245	101.04	3	3	Plateau	1.8784	1.7989	97.245	3	3	Median	3.7084	4.0589	138.9	4	4	Median	20496000000	8432300000	12063000000	4488000000	1916100000	2571900000	6036800000	2233800000	3803000000	4924900000	2538200000	2386700000	5045900000	1744200000	3301700000	14799	51	14040	89289;89290;89291;89292;89293;89294;89295;89296;89297;89298;89299;89300;89301	120619;120620;120621;120622;120623;120624;120625;120626;120627;120628;120629;120630;120631	120619			13	
EYQELMNVK	1	Oxidation (M)	1168.5434	0.54342452	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	41.189	37.592	2	6.0314E-06	37738	160511_QHF_FH_JSI9i_1	120.87	104.72		+	0.98935	0.98476	29.903	3	1	Median	0.74667	0.61803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98935	0.98476	NaN	1	1	Median	1.0299	1.0795	NaN	1	0	Median	994980000	519810000	475170000	533850000	284730000	249120000	0	0	0	6429500	3877300	2552200	454700000	231200000	223500000	14800	51	14040	89302;89303;89304	120632;120633;120634	120634		17	3	
EYQELMSVK	1	Unmodified	1125.5376	0.53761086	71;53;60	CON__P08729;CON__Q3KNV1;P08729;CON__P19013;P19013	KRT7;KRT4	Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								3	2	1	1	43.693	42.969	2	0.00072092	38122	160511_QHF_FH_JSI9i_1	75.378	25.96		+	1.1489	1.1678	18.271	5	1	Linear	1.0312	0.85342	NaN	1	0	Median	0.90697	1.1033	24.473	2	1	Median	1.2326	1.2004	NaN	1	0	Median	1.1024	1.1678	NaN	1	0	Median	3011100000	1536100000	1475000000	539180000	274790000	264390000	835980000	391230000	444740000	842390000	420480000	421910000	793600000	449610000	343990000	14801	53;71;60	14041	89305;89306;89307;89308;89309;89310;89311	120635;120636;120637;120638;120639	120635			5	
EYQELMSVK	1	Oxidation (M)	1141.5325	0.53252548	71;53;60	CON__P08729;CON__Q3KNV1;P08729;CON__P19013;P19013	KRT7;KRT4	Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4	no	no	0	0	1	0	By MS/MS				1	0	1									1				44.331	43.109	2	0.00043963	38220	160511_QHF_FH_JSI9i_1	83.456	33.623		+	0.28063	0.22871	NaN	1	0	Median	0.28063	0.22871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55006000	41175000	13831000	55006000	41175000	13831000	0	0	0	0	0	0	0	0	0	14802	53;71;60	14041	89312	120640	120640		28	1	
EYQEPEVPESNQK	1	Unmodified	1575.7053	0.70528113	1408	P33981	TTK	Dual specificity protein kinase TTK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.911	29.314	2	0.00030362	26247	160511_QHF_FH_JSI12i_1	73.666	50.98			1.0926	1.0951	21.324	4	1	Median	1.0112	0.82352	NaN	1	0	Median	0.85718	0.9941	NaN	1	0	Median	1.3725	1.3323	NaN	1	1	Median	1.1806	1.2063	NaN	1	0	Median	84515000	40408000	44106000	13879000	6414900	7464200	29164000	14917000	14246000	15632000	6417500	9214900	25839000	12658000	13181000	14803	1408	14042	89313;89314;89315;89316	120641;120642;120643	120642			3	
EYQISAGDFPEVK	1	Unmodified	1481.7038	0.70382456	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				65.994	64.964	2	3.008E-09	57750	160511_QHF_FH_JSI9i_1	103.91	80.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14804	4664	14043	89317	120644	120644			1	
EYQLNDSAAYYLNDLDR	0	Unmodified	2061.928	0.92796385	2049	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			83.139	82.987	2	6.2672E-07	75367	160511_QHF_FH_JSI10i_1	89.013	74.137			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14805	2049	14044	89318	120645	120645			1	
EYQLNDSASYYLNDLDR	0	Unmodified	2077.9229	0.92287848	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	79.502	79.02	2	1.3737E-10	71882	160511_QHF_FH_JSI11i_1	173.44	150.56			0.93702	0.75342	23.863	5	3	Median	0.93702	0.75342	NaN	1	1	Median	0.58686	0.66639	NaN	1	0	Median	0.74975	0.71923	NaN	1	0	Median	1.0763	1.0872	7.2712	2	2	Median	101880000	54176000	47702000	11089000	4057100	7031400	23877000	14934000	8943400	31316000	18133000	13183000	35597000	17053000	18544000	14806	915	14045	89319;89320;89321;89322;89323	120646;120647;120648;120649;120650;120651;120652	120647			7	
EYQLSDSAK	1	Unmodified	1039.4822	0.48220447	1330	P29992;O95837	GNA11;GNA14	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	19.961	19.584	2	0.0032057	17020	160511_QHF_FH_JSI12i_1	71.451	56.675			0.66553	0.74007	40.766	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81581	0.98733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54294	0.55474	NaN	1	1	Median	166170000	104610000	61561000	0	0	0	80381000	45962000	34419000	0	0	0	85793000	58651000	27142000	14807	1330	14046	89324;89325;89326	120653;120654;120655	120654			3	
EYQNEEDSLGGSR	0	Unmodified	1482.6223	0.62227978	2890	Q5HYK3	COQ5	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.97	19.593	2	0.0015211	17071	160511_QHF_FH_JSI12i_1	62.408	42.621			0.94343	1.0009	64.316	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4153	1.5772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62886	0.63513	NaN	1	0	Median	43448000	24194000	19254000	0	0	0	18710000	8090000	10620000	0	0	0	24739000	16104000	8634600	14808	2890	14047	89327;89328	120656;120657	120656			1	
EYQTQLIQR	0	Unmodified	1177.6091	0.60913632	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	33.378	31.596	2	4.8855E-08	27648	160511_QHF_FH_JSI10i_2	144.5	88.596			1.085	1.1482	20.342	9	0	Median	1.4004	1.1755	3.3231	2	0	Median	0.93497	1.1372	11.249	2	0	Median	1.3519	1.3429	29.147	3	0	Plateau	1.2246	1.323	34.914	2	0	Median	1182700000	517470000	665250000	179610000	74956000	104660000	365610000	180040000	185560000	341260000	148010000	193250000	296240000	114460000	181770000	14809	2517	14048	89329;89330;89331;89332;89333;89334;89335;89336;89337	120658;120659;120660;120661;120662;120663;120664;120665;120666;120667;120668	120668			11	
EYRDLTTAGAVTQCYR	0	Unmodified	1902.8894	0.88941028	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	1	2	3	3	44.426	43.879	2;3	4.4295E-11	37597	160511_QHF_FH_JSI12i_2	132.84	126.99			1.2544	1.3454	21.837	8	0	Median	1.5836	1.3383	NaN	1	0	Median	1.1728	1.4487	NaN	1	0	Median	0.96479	1.0524	16.633	3	0	Plateau	1.3464	1.3575	11.139	3	0	Median	879160000	424590000	454570000	90426000	37440000	52986000	208720000	106750000	101970000	312250000	164120000	148130000	267760000	116280000	151480000	14810	2190	14049	89338;89339;89340;89341;89342;89343;89344;89345;89346	120669;120670;120671;120672;120673;120674;120675;120676;120677;120678;120679;120680;120681;120682;120683	120672			15	
EYRPETGSWVFK	1	Unmodified	1497.7252	0.72522871	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	54.087	53.681	2;3	1.1245E-05	45983	160511_QHF_FH_JSI12i_3	91.62	76.233			0.9548	1.0628	7.9864	5	0	Median	NaN	NaN	NaN	0	0	Median	0.9548	1.0886	NaN	1	0	Median	1.1254	1.0785	2.0737	2	0	Median	0.92031	0.93641	0.19579	2	0	Median	1143900000	586430000	557450000	0	0	0	48173000	20827000	27346000	524890000	242500000	282390000	570820000	323110000	247710000	14811	1790	14050	89347;89348;89349;89350;89351	120684;120685;120686;120687;120688	120688			5	
EYSLDTR	0	Unmodified	882.40831	0.40831125	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.862	21.335	2	0.013376	18449	160511_QHF_FH_JSI10i_1	67.903	21.067			0.78891	0.81042	6.7271	4	0	Median	1.1063	0.91655	NaN	1	0	Median	0.68058	0.8038	NaN	1	0	Median	0.82506	0.8171	NaN	1	0	Median	0.75434	0.78981	NaN	1	0	Median	701030000	368860000	332170000	160170000	72616000	87552000	143800000	84173000	59628000	199530000	110810000	88723000	197520000	101260000	96269000	14812	4605	14051	89352;89353;89354;89355	120689;120690;120691	120690			3	
EYSLFPGQVVIMEGINTTGRK	1	Unmodified	2338.1991	0.1991171	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		97.233	97.102	3	3.0837E-06	86200	160511_QHF_FH_JSI11i_3	89.859	73.916			0.80032	0.84338	13.417	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76184	0.92731	NaN	1	1	Median	0.84073	0.76704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45578000	25921000	19657000	0	0	0	6327700	3394100	2933600	39250000	22527000	16723000	0	0	0	14813	2510	14052	89356;89357;89358	120692;120693;120694	120692			3	
EYSLQVLK	1	Unmodified	978.5386	0.53859714	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.66	4	4	2				3	1		2	4	4	4	56.463	52.769	2	0.00024549	46446	160511_QHF_FH_JSI9i_2	116.73	61.049			0.99154	1.0172	13.041	14	2	Median	1.3476	1.1279	17.923	2	0	Median	0.88513	1.0669	17.971	4	1	Median	0.92974	0.9308	11.063	4	0	Median	1.0039	1.0585	4.8014	4	1	Median	4556700000	2141200000	2415500000	887540000	381350000	506200000	1141900000	583210000	558640000	1352400000	611020000	741380000	1174900000	565640000	609280000	14814	1415	14053	89359;89360;89361;89362;89363;89364;89365;89366;89367;89368;89369;89370;89371;89372	120695;120696;120697;120698;120699;120700;120701;120702;120703;120704;120705;120706;120707;120708;120709;120710;120711;120712;120713;120714;120715;120716	120710			22	
EYSLQVLKNAR	1	Acetyl (K)	1361.7303	0.73031409	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5		1	2	1	2	74.348	63.763	2	3.9131E-15	33980	160513_QHF_FH_JSI11Kac_5	159.4	129.15			0.63779	1.1138	40.858	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1007	1.3073	22.531	2	0	Median	0.58721	0.57966	NaN	1	0	Median	1.0171	1.1128	NaN	1	0	Median	92937000	50477000	42460000	4377100	0	4377100	22306000	11546000	10760000	53800000	33344000	20456000	12453000	5586600	6866900	14815	1415	14054	89373;89374;89375;89376;89377;89378	120717;120718;120719;120720;120721;120722;120723	120720	1371		6	
EYSNENAVVK	1	Unmodified	1151.5459	0.54586736	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.329	16.847	2	2.5419E-09	14466	160511_QHF_FH_JSI12i_1	128.38	111			1.1278	1.1082	11.787	4	2	Median	1.3335	1.1092	NaN	1	0	Median	0.91756	1.1073	NaN	1	1	Median	1.3852	1.3104	NaN	1	1	Median	0.95375	0.98376	NaN	1	0	Median	317940000	164970000	152980000	95188000	50289000	44898000	79552000	43505000	36046000	62815000	27920000	34895000	80391000	43252000	37138000	14816	2437	14055	89379;89380;89381;89382	120724;120725;120726;120727	120725			4	
EYSQMQQQNTQK	1	Unmodified	1511.6675	0.66745583	3758	Q8WUB8	PHF10	PHD finger protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.055	10.872	2	3.108E-53	8690	160511_QHF_FH_JSI10i_1	218.49	197.03			0.96302	1.0202	2.4654	2	1	Median	NaN	NaN	NaN	0	0	Median	0.87222	1.0382	NaN	1	0	Median	1.0633	1.0026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60086000	30903000	29183000	0	0	0	36676000	19226000	17450000	23410000	11677000	11734000	0	0	0	14817	3758	14056	89383;89384;89385	120728;120729;120730;120731	120731			4	
EYSSELNAPSQESDSHPR	0	Unmodified	2031.877	0.87699092	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	25.498	24.775	3	4.2347E-12	22080	160511_QHF_FH_JSI12i_1	147.53	139.22			1.0818	1.0516	14.201	8	1	Median	1.2013	0.99922	10.996	2	0	Median	0.80338	0.9589	0.41048	2	0	Median	1.3253	1.3268	2.9284	2	0	Median	0.99529	1.0605	4.9535	2	1	Median	532750000	262500000	270260000	122310000	59913000	62399000	152310000	75663000	76644000	144830000	70012000	74821000	113300000	56909000	56391000	14818	1679	14057	89386;89387;89388;89389;89390;89391;89392;89393;89394	120732;120733;120734;120735;120736;120737;120738;120739;120740;120741;120742;120743;120744;120745;120746;120747;120748	120737			17	
EYTAAVEAK	1	Unmodified	980.48148	0.48147619	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				2	3	2	2	21.011	18.127	2	6.6655E-05	15312	160511_QHF_FH_JSI11i_1	96.668	79.892			0.84144	0.90004	37.105	9	2	Median	0.69512	0.57368	68.701	2	1	Median	0.73525	0.86839	22.244	3	1	Median	0.95846	0.94497	23.783	2	0	Median	0.95309	1.0303	19.114	2	0	Median	6201900000	3093500000	3108400000	1182700000	514570000	668150000	1741800000	964960000	776840000	1740100000	924040000	816020000	1537300000	689940000	847410000	14819	4296	14058	89395;89396;89397;89398;89399;89400;89401;89402;89403	120749;120750;120751;120752;120753;120754;120755;120756;120757;120758;120759	120749			11	
EYTAGREADDIVNWLK	1	Unmodified	1878.9112	0.91119158	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	80.803	79.874	3	0.013079	69107	160511_QHF_FH_JSI12i_2	45.723	37.174			0.56296	0.65613	43.967	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72329	0.89539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43817	0.48081	NaN	1	1	Median	43140000	26644000	16497000	0	0	0	28365000	16411000	11954000	0	0	0	14775000	10232000	4543000	14820	867	14059	89404;89405	120760;120761	120760			2	
EYTGFPDPYDELNTGK	1	Unmodified	1844.8105	0.81047448	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.276	73.781	2	2.5622E-40	65799	160511_QHF_FH_JSI9i_1	206.69	194.13			1.0989	1.0616	6.0769	4	0	Median	1.1889	0.9679	NaN	1	0	Median	0.92554	1.0763	NaN	1	0	Median	1.1183	1.0472	NaN	1	0	Median	1.0799	1.117	NaN	1	0	Median	312110000	148580000	163540000	69494000	29732000	39762000	69327000	33812000	35515000	70637000	37389000	33248000	102650000	47644000	55010000	14821	5161	14060	89406;89407;89408;89409	120762;120763;120764;120765;120766;120767;120768;120769;120770;120771;120772;120773;120774;120775	120775			14	
EYTINIHK	1	Unmodified	1016.5291	0.52909508	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.49	5	8	9				1	4	8	7	11	9	8	33.956	29.998	2;3	7.1835E-17	17339	160513_QHF_FH_JSI11Kac_5	150.4	123.14			0.93891	0.98077	40.176	35	6	Median	1.1893	1.024	9.7712	7	0	Median	0.93891	1.1202	52.254	11	3	Median	0.91392	0.89274	47.359	9	2	Median	0.9035	0.94742	14.173	8	1	Median	12617000000	6498500000	6118700000	2288600000	1069700000	1218900000	2615400000	1374200000	1241200000	4480400000	2378700000	2101700000	3232900000	1676000000	1556900000	14822	2035	14061	89410;89411;89412;89413;89414;89415;89416;89417;89418;89419;89420;89421;89422;89423;89424;89425;89426;89427;89428;89429;89430;89431;89432;89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444	120776;120777;120778;120779;120780;120781;120782;120783;120784;120785;120786;120787;120788;120789;120790;120791;120792;120793;120794;120795;120796;120797;120798;120799;120800;120801;120802;120803;120804;120805;120806;120807;120808;120809;120810;120811;120812;120813;120814;120815;120816;120817;120818;120819;120820;120821;120822;120823;120824;120825;120826;120827;120828;120829;120830;120831;120832;120833;120834;120835;120836;120837;120838;120839;120840;120841;120842	120819			67	
EYTINIHKR	1	Acetyl (K)	1214.6408	0.6407708	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								2	6	1	3	3	1	46.057	36.565	2;3	1.8104E-15	19885	160513_QHF_FH_JSI11Kac_6	164.57	148.36			0.42228	0.39475	94.138	8	0	Median	0.5083	0.41565	NaN	1	0	Median	1.4419	1.7177	1.0537	3	0	Median	0.24377	0.2389	6.4411	3	0	Median	0.35082	0.3749	NaN	1	0	Median	765100000	531050000	234050000	15278000	8052700	7225300	194510000	80487000	114020000	511530000	408700000	102840000	43780000	33812000	9968400	14823	2035	14062	89445;89446;89447;89448;89449;89450;89451;89452	120843;120844;120845;120846;120847;120848;120849;120850;120851	120844	2077		9	
EYTINIHKR	1	Unmodified	1172.6302	0.63020611	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	1	By MS/MS				3	0			3							3				22.404	21.125	2;3	0.0083061	17143	160511_QHF_FH_JSI9i_3	31.634	21.111			1.5181	1.2533	43.46	3	2	Plateau	1.5181	1.2533	43.46	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103530000	39421000	64108000	103530000	39421000	64108000	0	0	0	0	0	0	0	0	0	14824	2035	14062	89453;89454;89455	120852;120853;120854	120852			3	
EYTLDVYR	0	Unmodified	1057.508	0.50802529	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	49.664	47.346	2	7.6752E-05	42947	160511_QHF_FH_JSI11i_1	132.57	77.126			1.0196	1.1471	10.053	6	0	Median	1.3926	1.139	NaN	1	0	Median	0.99036	1.1654	1.2452	2	0	Median	1.1867	1.1745	19.58	2	0	Median	0.97725	1.0353	NaN	1	0	Median	1064000000	508980000	555050000	128640000	56073000	72564000	238040000	120030000	118010000	369280000	163320000	205960000	328070000	169560000	158510000	14825	1823	14063	89456;89457;89458;89459;89460;89461	120855;120856;120857;120858;120859;120860	120855			6	
EYTLQSFGEMADSFK	1	Unmodified	1751.7713	0.7712522	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				93.132	92.872	2	0.01044	81662	160511_QHF_FH_JSI9i_2	45.915	39.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14826	1515	14064	89462	120861	120861			1	
EYTNPEQIK	1	Unmodified	1120.5401	0.5400537	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	43.383	42.456	2	0.045956	37680	160511_QHF_FH_JSI9i_1	36.701	14.93			0.86655	0.80295	23.841	2	0	Median	0.82979	0.67839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90493	0.95039	NaN	1	0	Median	168730000	90117000	78615000	91093000	47020000	44073000	0	0	0	0	0	0	77638000	43096000	34542000	14827	183	14065	89463;89464	120862	120862			1	
EYTPFPPPQPESQIDK	1	Unmodified	1871.8941	0.89414453	2449	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	61.75	61.044	2	4.5557E-07	55506	160511_QHF_FH_JSI11i_1	89.403	72.036			0.93679	0.91122	15.764	3	1	Median	0.93679	0.77557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92678	0.91122	NaN	1	1	Median	1.0382	1.063	NaN	1	0	Median	110500000	50650000	59854000	38293000	19292000	19001000	0	0	0	27380000	11396000	15983000	44831000	19961000	24870000	14828	2449	14066	89465;89466;89467;89468;89469;89470	120863;120864;120865;120866;120867;120868;120869	120864			7	
EYTQATIYVHK	1	Unmodified	1351.6772	0.67721588	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		42.082	31.868	3	0.014271	18272	160513_QHF_FH_JSI11Kac_5	42.809	36.967			0.58703	0.57075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58703	0.57075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6232100	3750400	2481700	0	0	0	0	0	0	6232100	3750400	2481700	0	0	0	14829	3331	14067	89471	120870	120870			1	
EYTSDDMNVAPEDR	0	Unmodified	1640.6624	0.66243003	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			34.409	34.064	2	2.8129E-07	30447	160511_QHF_FH_JSI10i_1	91.937	82.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14830	5719	14068	89472	120871	120871			1	
EYVAAQLR	0	Unmodified	948.50288	0.50288033	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	29.45	28.612	2	0.014012	23901	160511_QHF_FH_JSI11i_2	51.787	16.682			0.77573	0.8038	19.776	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94297	0.92444	NaN	1	0	Median	0.63816	0.6989	NaN	1	0	Median	127120000	64525000	62597000	0	0	0	0	0	0	64689000	32002000	32687000	62433000	32523000	29910000	14831	2501	14069	89473;89474	120872	120872			1	
EYVAYSHTGR	0	Unmodified	1181.5465	0.54653606	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	5	5.51		3	1						1		1	3	1	14.081	13.831	2;3	0.0088444	10936	160511_QHF_FH_JSI11i_2	74.162	69.003			1.0419	1.0627	8.8438	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80491	0.99726	NaN	1	0	Median	1.0583	1.0561	12.388	2	0	Median	1.0994	1.1324	NaN	1	0	Median	372320000	187290000	185030000	0	0	0	78170000	39610000	38560000	229520000	115810000	113710000	64635000	31869000	32766000	14832	3953	14070	89475;89476;89477;89478;89479	120873;120874;120875	120874			2	
EYVDLER	0	Unmodified	922.43961	0.43961137	2482	Q13951	CBFB	Core-binding factor subunit beta	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		30.843	30.564	2	0.025501	27200	160511_QHF_FH_JSI11i_1	54.549	36.514			0.91594	0.98533	4.6822	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81036	0.95324	NaN	1	0	Median	1.0353	1.0185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	224340000	118630000	105710000	0	0	0	108260000	63418000	44846000	116070000	55212000	60860000	0	0	0	14833	2482	14071	89480;89481	120876	120876			1	
EYVDPNNIFGNR	0	Unmodified	1436.6684	0.66844211	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	64.295	63.52	2	6.6355E-16	56545	160511_QHF_FH_JSI9i_1	160.59	151.15			0.91857	0.98517	25.601	6	2	Median	1.2169	1.0155	NaN	1	0	Median	0.62933	0.75216	44.825	2	1	Median	0.9813	0.95572	NaN	1	0	Median	0.89658	0.9554	19.397	2	1	Median	366990000	191370000	175610000	78029000	37700000	40329000	97309000	57472000	39837000	99382000	49719000	49664000	92266000	46483000	45783000	14834	93	14072	89482;89483;89484;89485;89486;89487	120877;120878;120879;120880;120881;120882;120883;120884;120885	120884			9	
EYVEHTVK	1	Unmodified	1003.4975	0.4974606	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	2	0		3								1		1	1	10.781	10.296	3	0.0031288	8062	160511_QHF_FH_JSI9i_2	47.187	30.984			0.80436	0.85485	3.2465	3	0	Plateau	1.0011	0.85485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88402	0.88902	NaN	1	0	Median	0.75344	0.83355	NaN	1	0	Median	993560000	525460000	468090000	255000000	122180000	132830000	0	0	0	362290000	190260000	172030000	376270000	213030000	163240000	14835	587	14073	89488;89489;89490	120886	120886			1	
EYVESQLQR	0	Unmodified	1150.5619	0.56185177	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.25	5.63	3						1			1	1	2		25.988	25.409	2	2.3698E-06	22387	160511_QHF_FH_JSI10i_1	140.35	84.677			0.6639	0.64539	17.878	3	2	Median	0.85298	0.70891	NaN	1	0	Median	0.42767	0.5017	NaN	1	1	Median	0.6639	0.64539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	478730000	283100000	195630000	118890000	52216000	66675000	213310000	143800000	69505000	146530000	87079000	59453000	0	0	0	14836	3603	14074	89491;89492;89493;89494	120887;120888;120889;120890	120888			4	
EYVGIVR	0	Unmodified	834.45995	0.45995289	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		32.929	32.134	2	0.049013	27278	160511_QHF_FH_JSI11i_2	43.066	15.946			0.22888	0.20197	8.0257	3	0	Median	0.23931	0.20197	NaN	1	0	Median	0.1657	0.20154	NaN	1	0	Median	0.22888	0.23184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157840000	125980000	31859000	39819000	31592000	8226400	54993000	44260000	10734000	63031000	50132000	12899000	0	0	0	14837	453	14075	89495;89496;89497	120891	120891			1	
EYVHLVCQMR	0	Unmodified	1333.6271	0.62711134	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	50.383	41.039	2;3	3.1483E-08	22611	160513_QHF_FH_JSI10Kac_6	134.91	120.45			1.0367	1.0919	22.18	7	0	Median	1.2859	1.1053	NaN	1	0	Median	0.92275	1.076	2.0699	2	0	Median	0.91563	0.89167	16.495	2	0	Median	1.3383	1.4489	16.661	2	0	Median	170790000	82766000	88021000	12290000	6085500	6204400	103770000	50478000	53289000	29580000	15625000	13955000	25150000	10578000	14572000	14838	3290	14076	89498;89499;89500;89501;89502;89503;89504	120892;120893;120894;120895;120896;120897	120897			6	
EYWMDPEGEMK	1	Oxidation (M)	1429.553	0.55300293	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	1	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	49.801	49.301	2	0.00042212	44724	160511_QHF_FH_JSI12i_1	77.379	73.333			0.93096	0.95545	36.784	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.2599	NaN	1	0	Median	0.6415	0.60796	NaN	1	0	Median	0.93096	0.95545	NaN	1	0	Median	238020000	126930000	111090000	0	0	0	75526000	40095000	35431000	65518000	38358000	27160000	96979000	48476000	48502000	14839	1815	14077	89505;89506;89507	120898;120899	120899		1502	2	
EYWMDPEGEMK	1	Unmodified	1413.5581	0.5580883	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	3	1	1	61.903	61.155	2	2.8258E-09	55447	160511_QHF_FH_JSI11i_1	127.76	121.23			0.86258	0.9013	15.076	6	2	Median	0.93806	0.77284	10.201	2	1	Median	0.85384	1.0392	2.6552	2	1	Median	1.0033	0.97797	NaN	1	0	Median	0.77376	0.8231	NaN	1	0	Median	3078300000	1706000000	1372400000	618830000	318610000	300220000	722990000	394600000	328390000	833530000	464030000	369500000	902990000	528720000	374270000	14840	1815	14077	89508;89509;89510;89511;89512;89513;89514	120900;120901;120902;120903;120904;120905;120906;120907;120908;120909;120910;120911;120912;120913;120914;120915;120916;120917;120918	120902			19	
EYWMDPEGEMKPGR	1	Unmodified	1723.7334	0.73342691	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	56.015	55.347	2;3	2.9213E-09	48040	160511_QHF_FH_JSI11i_2	112.15	96.946			0.98051	0.98109	13.281	4	0	Median	1.1325	0.96181	NaN	1	0	Median	0.81321	1.0008	NaN	1	0	Median	0.84893	0.85331	NaN	1	0	Median	1.1435	1.1769	NaN	1	0	Median	464240000	222500000	241740000	66882000	28812000	38070000	134160000	83384000	50778000	116240000	55410000	60834000	146950000	54894000	92055000	14841	1815	14078	89515;89516;89517;89518;89519	120919;120920;120921;120922	120919			3	
EYWMDPEGEMKPGRK	2	Unmodified	1851.8284	0.82838993	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.94	0.229		1	17							4	9	5		49.347	48.263	2;3;4	4.8108E-05	40202	160511_QHF_FH_JSI10i_3	94.688	85.157			1.0134	0.98112	30.681	16	3	Median	1.9477	1.6105	43.697	3	1	Median	0.82459	0.9721	16.402	8	2	Median	1.0548	0.97879	22.657	5	0	Median	NaN	NaN	NaN	0	0	Median	1953700000	929690000	1024000000	71657000	24173000	47484000	680300000	351860000	328440000	1201700000	553650000	648090000	0	0	0	14842	1815	14079	89520;89521;89522;89523;89524;89525;89526;89527;89528;89529;89530;89531;89532;89533;89534;89535;89536;89537	120923;120924;120925;120926;120927;120928;120929;120930;120931;120932;120933;120934;120935;120936;120937;120938;120939;120940;120941;120942;120943;120944;120945;120946	120935			23	
EYWNDPELDEGER	0	Unmodified	1650.6798	0.67979466	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.587	50.921	2	0.0025469	46253	160511_QHF_FH_JSI12i_1	66.56	57.606			0.70385	0.74007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70385	0.74007	NaN	1	1	Median	21528000	9856200	11672000	0	0	0	0	0	0	0	0	0	21528000	9856200	11672000	14843	3580	14080	89538	120947	120947			1	
EYYEALPELK	1	Unmodified	1253.618	0.61796967	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	62.542	61.685	2	0.0035313	54849	160511_QHF_FH_JSI9i_1	69.276	51.411			0.74739	0.70022	76.524	2	2	Median	0.50005	0.4076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1171	1.2029	NaN	1	1	Median	95675000	53560000	42115000	58735000	36787000	21947000	0	0	0	0	0	0	36940000	16772000	20168000	14844	855	14081	89539;89540	120948;120949;120950	120950			3	
EYYLLHLQR	0	Unmodified	1233.6506	0.6506072	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.46		1	2						5	1	2	2	3	61.62	56.218	3	1.7693E-08	29470	160513_QHF_FH_JSI12Kac_6	122.19	88.001			0.90643	1.0028	22.993	7	2	Median	1.1581	1.0028	NaN	1	0	Median	0.74855	0.90599	24.842	2	1	Median	1.2052	1.1446	0.3854	2	0	Median	0.70232	0.74197	24.53	2	1	Median	975510000	426550000	548960000	243350000	93839000	149510000	244900000	132600000	112300000	300520000	120790000	179730000	186750000	79316000	107440000	14845	2082	14082	89541;89542;89543;89544;89545;89546;89547;89548	120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961	120959			11	
EYYLTHGLYLTAK	1	Unmodified	1570.8031	0.80314468	4712	Q9H490	PIGU	Phosphatidylinositol glycan anchor biosynthesis class U protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	72.602	63.84	3	6.8211E-13	33957	160513_QHF_FH_JSI9Kac_6	124.51	111.89			0.8118	0.87974	20.238	4	1	Median	1.2433	1.0649	NaN	1	0	Median	0.78844	0.9433	NaN	1	1	Median	0.83584	0.82046	NaN	1	0	Median	0.63633	0.66461	NaN	1	0	Median	169720000	92037000	77680000	50329000	20608000	29721000	42976000	26344000	16632000	42871000	23646000	19225000	33542000	21439000	12103000	14846	4712	14083	89549;89550;89551;89552	120962;120963;120964;120965	120963			4	
EYYSVHNK	1	Unmodified	1038.4771	0.47705951	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	10.331	10.13	2	0.0064747	7689	160511_QHF_FH_JSI11i_2	71.342	39.407			0.96323	0.97517	54.886	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96323	0.97517	54.886	2	2	Median	NaN	NaN	NaN	0	0	Median	38971000	20246000	18726000	0	0	0	0	0	0	38971000	20246000	18726000	0	0	0	14847	907	14084	89553;89554;89555	120966;120967;120968	120968			3	
EYYTLDSILFLLNNVHLSHPVYVR	0	Unmodified	2904.5174	0.51741477	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.755	89.335	3;4	1.0579E-93	53434	160513_QHF_FH_JSI10Kac_6	226.51	218.21			1.26	1.0119	13.124	4	0	Linear	1.2653	1.0793	NaN	1	0	Median	0.82395	0.97884	NaN	1	0	Median	1.2548	1.179	NaN	1	0	Median	1.2697	1.3327	NaN	1	0	Median	5508500000	2467300000	3041200000	1656900000	690030000	966840000	2558100000	1229800000	1328300000	1076900000	443670000	633250000	216590000	103790000	112800000	14848	3090	14085	89556;89557;89558;89559	120969;120970;120971;120972	120972			4	
FAAATGATPIAGR	0	Unmodified	1202.6408	0.6407708	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.38	4	4	4			3	3	4	4	5	7	7	7	41.811	36.222	2	1.0378E-50	20128	160513_QHF_FH_JSI11Kac_5	210.27	190.49			1.0065	1.0464	12.534	26	0	Median	1.2227	1.061	9.1204	5	0	Median	0.88492	1.0475	14.964	7	0	Median	1.1123	1.0904	13.884	7	0	Median	0.89924	0.98905	10.64	7	0	Median	21949000000	10929000000	11021000000	3546900000	1535700000	2011200000	5362200000	2825300000	2536900000	7637900000	3846800000	3791100000	5402300000	2720900000	2681500000	14849	917	14086	89560;89561;89562;89563;89564;89565;89566;89567;89568;89569;89570;89571;89572;89573;89574;89575;89576;89577;89578;89579;89580;89581;89582;89583;89584;89585	120973;120974;120975;120976;120977;120978;120979;120980;120981;120982;120983;120984;120985;120986;120987;120988;120989;120990;120991;120992;120993;120994;120995;120996;120997;120998;120999;121000;121001;121002;121003;121004;121005;121006;121007;121008;121009;121010;121011;121012;121013;121014;121015;121016;121017;121018;121019;121020;121021;121022;121023;121024	121008			52	
FAADAVK	1	Unmodified	720.38064	0.38063993	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.57	4						4	1		1	2	3	3	22.335	17.456	2	0.031087	15466	160511_QHF_FH_JSI12i_1	51.787	30.241			0.852	0.97913	18.249	9	0	Median	1.2649	1.0373	NaN	1	0	Median	0.90743	1.0793	13.776	2	0	Median	1.128	1.1002	14.26	3	0	Plateau	0.70405	0.74838	16.608	3	0	Median	2976000000	1374400000	1601700000	455120000	166710000	288410000	948410000	423420000	524990000	843090000	391840000	451260000	729400000	392400000	337000000	14850	1471	14087	89586;89587;89588;89589;89590;89591;89592;89593;89594	121025;121026;121027;121028;121029	121025			5	
FAADAVKLER	1	Acetyl (K)	1160.619	0.61897272	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	59.067	48.31	2	0.0041976	26689	160513_QHF_FH_JSI10Kac_4	72.275	41.588			0.7646	0.87284	35.199	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79243	0.95046	8.4268	2	0	Median	0.47037	0.46631	5.3748	2	0	Median	0.79439	0.87628	4.1758	2	0	Median	84699000	49225000	35473000	0	0	0	32073000	16733000	15341000	24177000	16150000	8027000	28448000	16342000	12106000	14851	1471	14088	89595;89596;89597;89598;89599;89600	121030;121031;121032	121031	1457		3	
FAADIISVLAMTMSGER	0	Unmodified	1810.8957	0.89574121	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		102.98	102.89	3	0.048527	90686	160511_QHF_FH_JSI11i_2	35.304	24.517			1.1254	1.0507	42.54	2	0	Median	1.6148	1.4194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78433	0.77771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46766000	26572000	20193000	17014000	7040600	9973100	0	0	0	29752000	19532000	10220000	0	0	0	14852	2370	14089	89601;89602	121033	121033			0	
FAAEHTIFASNTSSLQITSIANATTR	0	Unmodified	2751.3828	0.38277178	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	2	2	2	1	83.188	80.576	3	3.7899E-65	39469	160513_QHF_FH_JSI9Kac_6	196.02	177.72			1.2217	1.0204	26.169	3	1	Plateau	1.1268	0.95736	11.122	2	0	Median	0.55508	0.62134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	189560000	76773000	112790000	157570000	63014000	94555000	21294000	13759000	7535300	10697000	0	10697000	0	0	0	14853	2770	14090	89603;89604;89605;89606;89607;89608;89609	121034;121035;121036;121037;121038;121039;121040;121041;121042	121041			9	
FAAFFGNVPIFHIPGR	0	Unmodified	1788.9464	0.94639529	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	92.652	84.827	2;3	4.8301E-24	47268	160513_QHF_FH_JSI11Kac_6	151.44	141.52			1.0845	1.1592	6.0099	5	0	Median	1.3485	1.1519	NaN	1	0	Median	1.0463	1.2164	6.8146	2	0	Median	1.2865	1.2286	NaN	1	0	Median	1.0381	1.0939	NaN	1	0	Median	2882600000	1328300000	1554300000	512660000	191930000	320730000	1220600000	605890000	614680000	692200000	298760000	393430000	457220000	231770000	225460000	14854	3861	14091	89610;89611;89612;89613;89614	121043;121044;121045;121046;121047;121048;121049;121050;121051	121044			9	
FAAHLIAGAPSEGSGALKPELSR	1	Unmodified	2278.207	0.20697967	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				61.424	59.909	3	0.00029969	49200	160511_QHF_FH_JSI9i_3	47.392	40.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14855	3748	14092	89615	121052	121052			1	
FAAIGPTTAR	0	Unmodified	1003.5451	0.5450795	978	P10746	UROS	Uroporphyrinogen-III synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	34.059	33.165	2	0.015736	28117	160511_QHF_FH_JSI12i_2	51.066	29.766			0.50412	0.78649	32.588	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68668	0.84505	NaN	1	1	Median	0.46688	0.46521	NaN	1	1	Median	0.72734	0.78649	NaN	1	1	Median	87716000	45725000	41990000	0	0	0	31248000	15305000	15943000	31758000	15905000	15853000	24710000	14516000	10194000	14856	978	14093	89616;89617;89618	121053;121054;121055	121053			3	
FAAKGEGQLGPAER	1	Unmodified	1429.7314	0.73137672	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			24.592	23.318	3	0.042972	19257	160511_QHF_FH_JSI10i_3	22.475	8.7958			0.33077	0.36754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33077	0.36754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20337000	15152000	5184900	0	0	0	20337000	15152000	5184900	0	0	0	0	0	0	14857	1033	14094	89619	121056	121056			1	
FAAKGEGQLGPAER	1	Acetyl (K)	1471.7419	0.74194141	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	48.623	38.248	2	0.0012847	21601	160513_QHF_FH_JSI10Kac_4	79.82	68.227			0.75203	0.84225	158.47	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1115	1.3015	NaN	1	0	Median	0.061801	0.059206	NaN	1	1	Median	0.47973	0.51079	NaN	1	0	Median	12709000	7890700	4818600	0	0	0	5460800	2420300	3040500	1907400	1867000	40356	5341100	3603300	1737800	14858	1033	14094	89620;89621;89622	121057;121058;121059;121060	121058	851		4	
FAALDNEEEDKEEEIIK	2	Unmodified	2020.9477	0.94769624	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	6	10	2							3	5	3	7	58.016	57.221	2;3	5.8799E-15	50123	160511_QHF_FH_JSI9i_2	200	170.46			0.88048	0.89465	25.581	15	5	Median	1.028	0.88137	26.529	3	1	Median	0.59631	0.73142	28.047	3	1	Median	0.90078	0.9218	30.684	3	1	Median	0.87309	0.89703	19.916	6	2	Median	2245600000	1131400000	1114200000	419160000	210380000	208780000	534340000	285870000	248470000	576920000	319000000	257920000	715170000	316130000	399040000	14859	3634	14095	89623;89624;89625;89626;89627;89628;89629;89630;89631;89632;89633;89634;89635;89636;89637;89638;89639;89640	121061;121062;121063;121064;121065;121066;121067;121068;121069;121070;121071;121072;121073;121074;121075;121076;121077;121078;121079;121080;121081;121082;121083;121084;121085	121077			25	
FAALMQHQAK	1	Unmodified	1143.5859	0.58589846	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	24.321	23.663	2;3	9.906E-07	19952	160511_QHF_FH_JSI11i_3	125.25	108.01			0.31614	0.31352	169.09	8	8	Median	0.9964	0.8398	267.56	2	2	Median	1.6873	2.0142	275.27	2	2	Median	0.36191	0.34083	27.04	2	2	Median	0.25834	0.26779	34.504	2	2	Median	741070000	394800000	346280000	82537000	18241000	64296000	99045000	22028000	77018000	246660000	154400000	92253000	312840000	200130000	112710000	14860	5360	14096	89641;89642;89643;89644;89645;89646;89647;89648	121086;121087;121088;121089;121090;121091;121092;121093	121087			8	
FAANPNQNK	1	Unmodified	1002.4883	0.4882929	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	12.149	9.3374	2	1.3021E-10	8248	160511_QHF_FH_JSI10i_2	135.35	115.87			0.84972	0.8796	26.615	10	4	Median	1.051	0.87955	27.295	2	2	Median	0.73504	0.86795	17.357	2	0	Median	0.91595	0.89202	40.285	3	1	Median	0.78143	0.86735	25.445	3	1	Median	3139200000	1867200000	1272100000	776170000	436230000	339940000	566460000	356170000	210290000	1009800000	628370000	381420000	786810000	446400000	340410000	14861	2700	14097	89649;89650;89651;89652;89653;89654;89655;89656;89657;89658;89659;89660	121094;121095;121096;121097;121098;121099;121100;121101;121102;121103;121104;121105;121106;121107	121107			14	
FAAQAAHQGTASQYFMLLLLTDGAVTDVEATR	0	Unmodified	3395.682	0.68199027	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		96.75	87.514	3	3.9256E-44	49929	160513_QHF_FH_JSI9Kac_6	205.07	189.39			0.99446	0.89963	14.149	2	2	Median	0.95622	0.81398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0342	0.9943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	240360000	83740000	156620000	122460000	43642000	78819000	0	0	0	117900000	40098000	77803000	0	0	0	14862	4320	14098	89661;89662	121108;121109	121109			2	
FAAQNLHQNLIR	0	Unmodified	1423.7684	0.76843093	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			4							2	1		1	43.591	42.474	2;3	1.0704E-05	35402	160511_QHF_FH_JSI10i_3	100.55	91.121			0.47271	0.41511	13.424	3	0	Median	0.51768	0.41511	NaN	1	0	Median	0.33001	0.37064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47271	0.48428	NaN	1	0	Median	416390000	296250000	120140000	218150000	144310000	73848000	140770000	116220000	24557000	0	0	0	57467000	35733000	21734000	14863	4627	14099	89663;89664;89665;89666	121110;121111;121112;121113	121111			4	
FAASGGFLHHMAGLSSSK	1	Unmodified	1803.8726	0.872638	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	5	5	4	1	60.941	55.426	3;4	2.6534E-17	29741	160513_QHF_FH_JSI10Kac_6	138.07	120.58			0.93436	0.93749	26.94	15	10	Median	0.95271	0.81386	26.795	5	4	Median	0.94431	1.088	23.932	5	3	Linear	1.1523	1.0935	21.202	4	3	Median	0.80185	0.86159	NaN	1	0	Median	412910000	200880000	212030000	96571000	48756000	47816000	176820000	91980000	84839000	131990000	56350000	75637000	7535400	3794200	3741200	14864	4538	14100	89667;89668;89669;89670;89671;89672;89673;89674;89675;89676;89677;89678;89679;89680;89681	121114;121115;121116;121117;121118;121119;121120;121121;121122;121123;121124;121125;121126;121127;121128;121129;121130	121128			17	
FAASGGFLHHMAGLSSSK	1	Oxidation (M)	1819.8676	0.86755262	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				48.428	39.204	3	0.021202	20898	160513_QHF_FH_JSI9Kac_6	31.883	27.781			0.88023	0.76114	NaN	1	0	Median	0.88023	0.76114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9116900	4271100	4845800	9116900	4271100	4845800	0	0	0	0	0	0	0	0	0	14865	4538	14100	89682	121131;121132	121132			2	
FAAVGFHK	1	Unmodified	875.46537	0.46537261	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	29.54	28.753	2;3	0.00060559	24574	160511_QHF_FH_JSI11i_3	79.116	39.013			1.1958	0.99444	38.87	7	4	Median	1.1958	0.95824	NaN	1	0	Median	0.87103	0.99444	52.772	3	3	Median	0.95789	0.87962	NaN	1	0	Median	1.5064	1.5225	28.997	2	1	Median	925660000	418490000	507170000	126130000	56838000	69289000	263290000	129880000	133410000	139040000	68775000	70269000	397190000	162990000	234200000	14866	3602	14101	89683;89684;89685;89686;89687;89688;89689	121133;121134;121135;121136;121137;121138;121139;121140;121141;121142	121134			10	
FAAYFQQGDMESNGK	1	Unmodified	1691.725	0.72497071	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.53	8	7	6				3	4	6	9	9	8	8	54.814	50.983	2;3	7.1089E-184	45338	160511_QHF_FH_JSI10i_2	319.63	303.49		+	0.94072	1.0105	28.751	30	9	Median	1.1901	0.99643	42.263	9	4	Median	0.89629	1.0719	17.851	8	3	Median	0.95404	0.96198	27.267	7	1	Median	0.85803	0.95402	23.741	6	1	Median	9615400000	4645000000	4970400000	2043800000	852570000	1191200000	2439300000	1155400000	1283900000	2982700000	1520900000	1461900000	2149600000	1116100000	1033400000	14867	856;75	14102	89690;89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704;89705;89706;89707;89708;89709;89710;89711;89712;89713;89714;89715;89716;89717;89718;89719;89720;89721;89722;89723	121143;121144;121145;121146;121147;121148;121149;121150;121151;121152;121153;121154;121155;121156;121157;121158;121159;121160;121161;121162;121163;121164;121165;121166;121167;121168;121169;121170;121171;121172;121173;121174;121175;121176;121177;121178;121179;121180;121181;121182;121183;121184;121185;121186;121187;121188;121189;121190;121191;121192;121193;121194;121195;121196;121197;121198;121199;121200	121193			58	
FAAYFQQGDMESNGK	1	Oxidation (M)	1707.7199	0.71988533	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.29	5	6	4				3	7		5	7	6	7	46.538	41.704	2;3	2.0529E-29	37776	160511_QHF_FH_JSI11i_1	184.55	177.19		+	0.92888	0.96103	34.525	23	6	Median	1.0916	0.92391	28.546	5	3	Median	0.83241	0.97872	52.523	6	2	Median	0.94314	0.94104	35.636	6	1	Median	0.95569	1.0363	15.558	6	0	Median	962340000	465270000	497060000	160660000	68983000	91682000	211810000	111840000	99965000	265360000	129200000	136160000	324500000	155240000	169260000	14868	856;75	14102	89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734;89735;89736;89737;89738;89739;89740;89741;89742;89743;89744;89745;89746;89747;89748	121201;121202;121203;121204;121205;121206;121207;121208;121209;121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220;121221;121222;121223;121224;121225;121226;121227;121228;121229;121230;121231;121232;121233;121234	121203		35	34	
FACHSASLTVR	0	Unmodified	1247.6081	0.60809046	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		4	8						8	5	6	5	4	29.408	24.557	2;3	3.597E-15	13991	160513_QHF_FH_JSI10Kac_6	126.19	111.32			1.1973	1.1841	25.801	16	2	Median	1.7042	1.4147	32.631	4	0	Median	1.2163	1.4111	27.987	5	2	Median	1.0548	1.0142	9.3685	3	0	Median	1.143	1.1552	5.7464	4	0	Median	1622200000	687320000	934910000	349850000	129730000	220120000	674560000	273110000	401450000	318470000	152690000	165780000	279350000	131780000	147560000	14869	2644	14103	89749;89750;89751;89752;89753;89754;89755;89756;89757;89758;89759;89760;89761;89762;89763;89764;89765;89766;89767;89768	121235;121236;121237;121238;121239;121240;121241;121242;121243;121244;121245;121246;121247;121248;121249;121250;121251;121252;121253;121254;121255;121256;121257;121258;121259;121260;121261	121260			27	
FACNGTVIEHPEYGEVIQLQGDQR	0	Unmodified	2759.2973	0.29732759	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	69.259	68.659	3	7.4469E-17	61226	160511_QHF_FH_JSI11i_3	124.81	120.45			1.0593	1.0929	16.385	5	0	Median	NaN	NaN	NaN	0	0	Median	0.88346	1.0929	NaN	1	0	Median	1.01	0.95164	16.527	2	0	Median	1.1974	1.2427	9.4165	2	0	Median	197580000	95952000	101630000	0	0	0	28453000	17497000	10956000	94666000	48300000	46366000	74459000	30155000	44304000	14870	1522	14104	89769;89770;89771;89772;89773	121262;121263;121264;121265;121266;121267;121268;121269;121270;121271	121263			10	
FACNGTVIEHPEYGEVIQLQGDQRK	1	Unmodified	2887.3923	0.39229061	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	8.29	6.69		2	2						3		2	4	1	66.636	62.633	4	9.5347E-32	55755	160511_QHF_FH_JSI11i_3	162.71	160.2			0.72316	0.79847	38.625	7	3	Median	NaN	NaN	NaN	0	0	Median	0.71402	0.84752	3.2719	2	0	Median	0.72158	0.7101	11.831	4	3	Median	1.8363	1.9772	NaN	1	0	Median	600600000	345980000	254620000	0	0	0	164140000	94674000	69470000	407290000	239990000	167300000	29166000	11313000	17853000	14871	1522	14105	89774;89775;89776;89777;89778;89779;89780	121272;121273;121274;121275;121276;121277;121278	121273			7	
FADAASLLLSLMTSR	0	Unmodified	1594.8389	0.83887826	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.03	103.04	2	1.8173E-07	89787	160511_QHF_FH_JSI12i_3	140.31	106.45			1.3216	1.3367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3216	1.3367	NaN	1	0	Median	29122000	11402000	17720000	0	0	0	0	0	0	0	0	0	29122000	11402000	17720000	14872	4487	14106	89781	121279	121279			1	
FADDQLIIDFDNFVR	0	Unmodified	1826.8839	0.88391419	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		3										2	1	102.08	101.94	2;3	1.268E-14	89755	160511_QHF_FH_JSI11i_2	159.08	140.95			0.99394	1.0912	12.221	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0979	1.0946	17.281	2	0	Median	0.99394	1.0912	NaN	1	0	Median	277900000	125910000	152000000	0	0	0	0	0	0	217480000	96108000	121370000	60425000	29800000	30626000	14873	1122	14107	89782;89783;89784	121280;121281;121282	121280			2	
FADDTYTESYISTIGVDFK	1	Unmodified	2170.9946	0.99464644	2020;4642	Q9H0U4;P62820	RAB1B;RAB1A	Ras-related protein Rab-1B;Ras-related protein Rab-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	16	6								5	7	6	4	96.329	96.056	2;3	7.1168E-68	87342	160511_QHF_FH_JSI10i_1	196.33	184.72			1.084	0.95288	56.149	16	5	Median	1.3837	1.1094	10.203	4	2	Linear	0.74077	0.86011	100.1	5	2	Median	1.3924	1.3265	18.508	3	1	Plateau	0.83577	0.88491	27.026	4	0	Median	833940000	444600000	389350000	89921000	40476000	49444000	379700000	213330000	166370000	154600000	77681000	76919000	209720000	113100000	96615000	14874	4642;2020	14108	89785;89786;89787;89788;89789;89790;89791;89792;89793;89794;89795;89796;89797;89798;89799;89800;89801;89802;89803;89804;89805;89806	121283;121284;121285;121286;121287;121288;121289;121290;121291;121292;121293;121294;121295;121296;121297;121298;121299;121300;121301;121302;121303;121304;121305;121306;121307;121308;121309;121310;121311;121312;121313;121314;121315;121316;121317;121318;121319;121320;121321;121322;121323;121324;121325;121326;121327;121328;121329;121330	121313			47	
FADEHVPGSPFTVK	1	Unmodified	1529.7514	0.75144346	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.41		11	2						3	5	3	4	4	56.428	53.784	2;3	8.5424E-05	47489	160511_QHF_FH_JSI10i_2	77.776	74.198			0.99051	1.0168	21.66	16	7	Median	1.2171	0.99031	28.276	5	3	Median	0.73769	0.91563	13.011	3	0	Median	0.94886	0.96894	21.734	4	2	Median	1.0591	1.3668	12.757	4	2	Linear	2344700000	1290900000	1053800000	308800000	180070000	128720000	493420000	256030000	237390000	961600000	578050000	383560000	580840000	276720000	304120000	14875	512	14109	89807;89808;89809;89810;89811;89812;89813;89814;89815;89816;89817;89818;89819;89820;89821;89822	121331;121332;121333;121334;121335;121336;121337;121338;121339;121340;121341;121342;121343;121344;121345;121346;121347;121348;121349;121350;121351;121352;121353;121354	121351			24	
FADFMVK	1	Unmodified	856.41531	0.41531088	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.3	53.339	2	0.010183	46755	160511_QHF_FH_JSI9i_2	81.297	63.735			1.6064	1.9047	10.767	4	4	Median	2.3727	2.0213	NaN	1	1	Median	1.524	1.9158	NaN	1	1	Median	1.5425	1.5784	NaN	1	1	Median	1.6729	1.8936	NaN	1	1	Median	1231900000	580610000	651290000	208180000	86829000	121350000	301760000	137430000	164340000	431670000	206360000	225310000	290280000	149990000	140300000	14876	1519	14110	89823;89824;89825;89826	121355;121356;121357;121358	121356			4	
FADFMVKDVK	2	Acetyl (K);Oxidation (M)	1256.6111	0.61111015	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	1	0	1	1			By MS/MS	By matching	14.5	0.5							1	1				1	1	70.366	59.619	2	0.0049889	31955	160513_QHF_FH_JSI11Kac_5	59.931	49.666			0.77903	0.8009	78.736	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46032	0.45897	NaN	1	0	Median	1.3184	1.3976	NaN	1	0	Median	10948000	7299200	3648800	0	0	0	0	0	0	8711200	6183300	2528000	2236800	1115900	1120900	14877	1519	14111	89827;89828	121359	121359	1541	1192	1	
FADFMVKDVK	2	Acetyl (K)	1240.6162	0.61619553	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	14.7	0.471							1	2			1	1	1	77.493	66.95	2	0.0004456	35575	160513_QHF_FH_JSI11Kac_5	90.827	79.997			0.60501	0.63614	38.924	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8514	1.0041	NaN	1	0	Median	0.47364	0.46287	NaN	1	0	Median	0.60501	0.63614	NaN	1	0	Median	17690000	11418000	6271800	0	0	0	4299500	2654200	1645300	11739000	7731000	4007500	1651400	1032400	619010	14878	1519	14111	89829;89830;89831	121360	121360	1541		1	
FADGEVVR	0	Unmodified	891.44503	0.4450311	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	1	1	2	23.677	22.891	2	0.0076348	18976	160511_QHF_FH_JSI12i_2	58.917	35.898			0.97593	0.95457	29.712	6	0	Median	0.92736	0.77906	41.577	2	0	Median	0.65786	0.81067	NaN	1	0	Median	1.2598	1.28	NaN	1	0	Median	0.97593	1.0382	24.717	2	0	Median	878790000	425230000	453560000	196210000	79831000	116380000	164000000	88683000	75314000	272830000	126770000	146060000	245750000	129940000	115810000	14879	2571	14112	89832;89833;89834;89835;89836;89837	121361;121362;121363;121364	121361			4	
FADGSIR	0	Unmodified	764.3817	0.38170256	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		2	1	2	1	17.982	15.928	2	0.0068249	13255	160511_QHF_FH_JSI11i_2	89.703	58.125			0.89072	0.98339	8.8771	6	0	Median	1.2603	1.0655	9.1315	2	0	Median	0.80347	0.99153	NaN	1	0	Median	0.89072	0.89671	3.344	2	0	Median	0.86826	0.97531	NaN	1	0	Median	2655300000	1329000000	1326300000	577370000	249220000	328150000	553710000	305000000	248710000	1034200000	532220000	501970000	489980000	242550000	247430000	14880	1367	14113	89838;89839;89840;89841;89842;89843	121365;121366;121367;121368;121369;121370	121369			6	
FADIGNTVK	1	Unmodified	963.50255	0.50254598	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		34.182	33.456	2	0.0031367	28445	160511_QHF_FH_JSI11i_2	71.692	51.137			1.6798	1.5911	55.231	2	2	Median	2.674	2.3512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0553	1.0767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	282660000	131650000	151010000	99852000	39796000	60056000	0	0	0	182810000	91858000	90950000	0	0	0	14881	989	14114	89844;89845	121371;121372	121372			2	
FADIGNTVKK	2	Unmodified	1091.5975	0.597509	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	25.421	25.4	2;3	0.016994	21858	160511_QHF_FH_JSI11i_3	37.18	26.422			0.48995	0.50733	57.065	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50071	0.46813	NaN	1	1	Median	0.80386	0.81406	66.874	2	2	Median	272990000	160700000	112290000	0	0	0	0	0	0	46556000	29788000	16768000	226430000	130910000	95523000	14882	989	14115	89846;89847;89848	121373;121374;121375	121373			3	
FADILSMADHLK	1	Unmodified	1359.6857	0.68567208	3690	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		82.287	81.648	3	8.3409E-05	72696	160511_QHF_FH_JSI10i_2	75.479	62.863			0.26391	0.2572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26391	0.2572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17493000	6016000	11477000	0	0	0	9592400	0	9592400	7901000	6016000	1885000	0	0	0	14883	3690	14116	89849;89850;89851	121376;121377;121378	121378			3	
FADLSEAANR	0	Unmodified	1092.52	0.51998696	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.12	3	4					3	1		2	3	3	3	35.211	31.174	2	3.7123E-11	26479	160511_QHF_FH_JSI12i_2	149.65	93.977			0.96378	0.98792	22.246	11	1	Median	1.0295	0.85645	15.175	2	0	Median	0.80275	0.98792	28.052	3	1	Median	0.8353	0.83863	22.268	3	0	Plateau	1.022	1.1067	13.124	3	0	Median	2154900000	1145100000	1009800000	286420000	139800000	146620000	768230000	459210000	309020000	683750000	340920000	342830000	416500000	205130000	211370000	14884	913	14117	89852;89853;89854;89855;89856;89857;89858;89859;89860;89861;89862	121379;121380;121381;121382;121383;121384;121385;121386;121387;121388;121389;121390;121391;121392;121393	121380			15	
FADLSEAANRNNDALR	0	Unmodified	1775.8551	0.85507368	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	41.398	40.72	2;3	9.6591E-08	35792	160511_QHF_FH_JSI10i_2	105.14	96.34			1.0592	1.1173	22.164	6	1	Median	0.99734	0.85617	NaN	1	0	Median	0.9878	1.2198	NaN	1	0	Median	1.0448	1.0251	6.0569	2	0	Median	1.2968	1.3836	24.108	2	1	Median	1534000000	646930000	887090000	179310000	69479000	109830000	433770000	160760000	273010000	425410000	186450000	238960000	495520000	230240000	265280000	14885	913	14118	89863;89864;89865;89866;89867;89868;89869;89870	121394;121395;121396;121397;121398;121399;121400;121401;121402;121403;121404;121405	121402			12	
FADQDDIGNVSFDR	0	Unmodified	1597.7009	0.70086445	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.8	57.309	2	0.00010139	51980	160511_QHF_FH_JSI11i_1	109.24	96.659			0.80827	0.91803	13.106	3	2	Median	NaN	NaN	NaN	0	0	Median	0.78934	0.91803	NaN	1	1	Median	0.80827	0.77596	NaN	1	0	Median	0.98516	1.0046	NaN	1	1	Median	141220000	72437000	68783000	0	0	0	49829000	24786000	25044000	36126000	18816000	17310000	55265000	28835000	26430000	14886	2887	14119	89871;89872;89873;89874	121406;121407;121408;121409	121406			4	
FADQHVPGSPFSVK	1	Unmodified	1514.7518	0.75177781	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.49	2	8	9					1	4	6	6	7	5	52.605	50.152	2;3	1.4284E-09	43513	160511_QHF_FH_JSI11i_2	142.1	126.21			1.0165	1.1062	28.304	23	5	Median	0.98446	0.84872	17.849	6	1	Median	1.0872	1.2903	41.438	6	4	Median	1.1067	1.0682	24.066	6	0	Median	1.019	1.1414	12.281	5	0	Median	9116700000	4322400000	4794200000	1447300000	654570000	792690000	1945700000	969990000	975740000	3276000000	1579800000	1696100000	2447700000	1118000000	1329700000	14887	1192	14120	89875;89876;89877;89878;89879;89880;89881;89882;89883;89884;89885;89886;89887;89888;89889;89890;89891;89892;89893;89894;89895;89896;89897;89898	121410;121411;121412;121413;121414;121415;121416;121417;121418;121419;121420;121421;121422;121423;121424;121425;121426;121427;121428;121429;121430;121431;121432;121433;121434;121435;121436;121437;121438;121439;121440;121441;121442;121443;121444;121445;121446;121447;121448;121449;121450;121451;121452;121453;121454;121455;121456;121457	121441			48	
FADQHVPGSPFSVKVTGEGR	1	Acetyl (K)	2156.0651	0.065066458	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	71.712	62.128	3	3.5256E-13	33913	160513_QHF_FH_JSI11Kac_6	120.64	110.5			0.47592	0.47792	31.657	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40669	0.38207	NaN	1	0	Median	0.55695	0.59782	NaN	1	0	Median	184210000	142490000	41723000	0	0	0	0	0	0	144770000	111880000	32884000	39447000	30609000	8838800	14888	1192	14121	89899;89900;89901;89902	121458;121459;121460;121461	121458	1052		4	
FAEAFEAIPR	0	Unmodified	1149.5819	0.58185893	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.37	4.04	4	9	4					2		3	2	8	6	62.637	60.647	2;3	2.4703E-07	32440	160513_QHF_FH_JSI11Kac_5	113.62	97.419			0.53575	0.48109	156.68	16	15	Median	7.5886	6.5294	124.66	3	3	Plateau	1.2027	1.455	193.16	2	2	Median	0.42196	0.41795	187.8	7	6	Median	0.28082	0.29655	136.95	4	4	Median	7944900000	3862300000	4082600000	1107900000	390490000	717410000	1165500000	488360000	677160000	3139700000	1651900000	1487900000	2531800000	1331600000	1200200000	14889	1721	14122	89903;89904;89905;89906;89907;89908;89909;89910;89911;89912;89913;89914;89915;89916;89917;89918;89919;89920;89921	121462;121463;121464;121465;121466;121467;121468;121469;121470;121471;121472;121473;121474;121475;121476;121477;121478;121479;121480;121481;121482	121479			21	
FAEALGSTEAK	1	Unmodified	1122.5557	0.55570376	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.91	1	4					3			2	2	2	2	32.863	28.629	2	0.00010462	17444	160513_QHF_FH_JSI11Kac_4	95.523	74.898			0.48458	0.47338	41.831	8	7	Median	0.84487	0.72108	71.739	2	1	Median	0.43236	0.51347	26.529	2	2	Median	0.49678	0.49908	53.355	2	2	Median	0.39764	0.42938	26.022	2	2	Median	312860000	182720000	130140000	174470000	92199000	82274000	48380000	35317000	13063000	46818000	29880000	16939000	43189000	25321000	17868000	14890	2087	14123	89922;89923;89924;89925;89926;89927;89928;89929	121483;121484;121485;121486;121487;121488;121489;121490	121485			8	
FAEASEEAVSVQR	0	Unmodified	1421.6787	0.67867245	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.532	33.945	2	3.6433E-07	30702	160511_QHF_FH_JSI12i_1	96.604	80.975			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14891	1360	14124	89930	121491	121491			1	
FAEEDKK	2	Unmodified	865.41815	0.41814765	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								3	2	4	3	5.8313	5.4286	2;3	0.003486	3406	160511_QHF_FH_JSI12i_2	63.565	17.847			0.95819	0.81821	14.303	7	6	Median	0.98229	0.83288	2.5122	2	2	Median	0.65735	0.81141	NaN	1	1	Median	1.0668	1.0924	0.10693	2	2	Median	0.71631	0.8042	1.7092	2	1	Median	4332100000	2131400000	2200700000	996360000	452810000	543550000	353610000	175260000	178350000	1504300000	685440000	818830000	1477900000	817900000	660010000	14892	982	14125	89931;89932;89933;89934;89935;89936;89937;89938;89939;89940;89941;89942	121492;121493;121494;121495;121496;121497;121498;121499;121500;121501;121502;121503;121504	121494			13	
FAEFLLPLLIEK	1	Unmodified	1431.8377	0.83773927	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		4	4							2	2	2	2	102.62	102.54	2	1.3218E-10	91125	160511_QHF_FH_JSI10i_2	141.88	132.17			0.89831	0.87304	28.283	7	0	Median	0.95678	0.80861	NaN	1	0	Median	0.77266	0.9301	24.465	2	0	Median	1.1578	1.139	49.457	2	0	Median	1.0131	1.0642	27.995	2	0	Median	626210000	328500000	297700000	99624000	40430000	59194000	150530000	79497000	71035000	186150000	104200000	81953000	189900000	104380000	85523000	14893	4258	14126	89943;89944;89945;89946;89947;89948;89949;89950	121505;121506;121507;121508;121509;121510	121510			5	
FAEFQYLQPGPPR	0	Unmodified	1548.7725	0.77251325	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	70.4	69.564	2;3	4.1996E-17	61782	160511_QHF_FH_JSI10i_2	140.45	114.79			1.0775	1.1285	22.248	5	2	Median	1.7638	1.4558	NaN	1	0	Median	1.0775	1.3226	NaN	1	0	Median	0.94611	0.95768	23.211	2	2	Median	1.0029	1.0962	NaN	1	0	Median	292090000	149080000	143010000	25750000	10248000	15503000	23599000	16157000	7442400	181750000	96005000	85741000	60994000	26674000	34320000	14894	3499	14127	89951;89952;89953;89954;89955;89956;89957	121511;121512;121513;121514;121515;121516;121517	121517			7	
FAEHGETLAMK	1	Unmodified	1232.586	0.58595803	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	5	3	3	2	30.356	27.863	2;3	1.9062E-06	24178	160511_QHF_FH_JSI9i_2	103.91	84.778			0.73444	0.79134	36.107	11	2	Median	0.87224	0.41458	38.44	3	1	Plateau	0.65488	0.79134	18.216	3	1	Median	0.73444	0.75344	15.199	3	0	Median	1.0972	1.2008	13.519	2	0	Median	879900000	477490000	402400000	101500000	47850000	53646000	290810000	181200000	109610000	238310000	119940000	118370000	249280000	128510000	120780000	14895	4518;3068	14128	89958;89959;89960;89961;89962;89963;89964;89965;89966;89967;89968;89969;89970	121518;121519;121520;121521;121522;121523;121524;121525;121526;121527;121528;121529;121530;121531	121524			14	
FAEHVFR	0	Unmodified	904.45554	0.45553621	1468	P37235;P84074	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	25.494	25.041	2;3	0.0073331	21002	160511_QHF_FH_JSI11i_3	51.787	37.118			0.85923	0.94281	18.102	8	2	Median	1.1821	1.0052	NaN	1	0	Median	0.78436	0.96648	NaN	1	0	Median	1.2395	1.1457	26.806	3	1	Median	0.80257	0.89233	7.498	3	1	Median	1186900000	595000000	591860000	60521000	24107000	36414000	71320000	33003000	38317000	552900000	257350000	295560000	502120000	280550000	221580000	14896	1468	14129	89971;89972;89973;89974;89975;89976;89977;89978	121532;121533;121534;121535;121536;121537;121538;121539	121533			8	
FAEKHNFAK	2	Acetyl (K)	1132.5665	0.56654322	5079	Q9NWX6	THG1L	Probable tRNA(His) guanylyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		30.235	21.037	3	0.01761	12153	160513_QHF_FH_JSI11Kac_6	47.187	35.824			0.11987	0.12057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11987	0.12057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7215900	6535400	680490	0	0	0	0	0	0	7215900	6535400	680490	0	0	0	14897	5079	14130	89979	121540;121541	121541	3305		2	
FAELAQIYAQR	0	Unmodified	1308.6826	0.68263561	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	1	1	3	66.118	61.14	2	9.811E-06	31892	160513_QHF_FH_JSI12Kac_6	106.2	86.209			1.2269	1.3452	62.829	6	6	Median	0.43655	0.38343	NaN	1	1	Median	1.1356	1.3546	NaN	1	1	Median	1.3255	1.3359	NaN	1	1	Median	1.3914	1.4994	56.702	3	3	Median	724110000	417240000	306870000	131380000	70520000	60862000	75186000	33694000	41491000	369520000	248830000	120700000	148020000	64197000	83823000	14898	4924	14131	89980;89981;89982;89983;89984;89985	121542;121543;121544;121545;121546;121547	121545			6	
FAELVYTGFWHSPECEFVR	0	Unmodified	2373.0888	0.088838367	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.84	6.8		6	4						9	2	4	7	6	91.165	87.048	2;3	2.0669E-165	44851	160513_QHF_FH_JSI10Kac_6	367.86	331.01			1.1224	1.1178	64.379	17	12	Median	1.3572	1.1441	3.2901	2	0	Median	0.69703	0.82712	74.02	4	4	Median	0.97686	0.97519	67.017	6	4	Median	1.1901	1.333	71.344	5	4	Median	10799000000	4623800000	6175000000	1023000000	369640000	653400000	4972100000	2574100000	2398100000	2065800000	967070000	1098700000	2737900000	713030000	2024800000	14899	779	14132	89986;89987;89988;89989;89990;89991;89992;89993;89994;89995;89996;89997;89998;89999;90000;90001;90002;90003;90004	121548;121549;121550;121551;121552;121553;121554;121555;121556;121557;121558;121559;121560;121561;121562;121563;121564;121565;121566;121567;121568;121569;121570;121571;121572;121573	121571			26	
FAEMEER	0	Unmodified	910.38547	0.38546731	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	18.135	17.413	2	0.016292	14224	160511_QHF_FH_JSI12i_2	63.301	51.933			1.4299	1.4088	20.069	3	0	Plateau	1.2046	1.0154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4299	1.4088	NaN	1	0	Median	0.86917	0.97829	NaN	1	0	Median	282460000	135430000	147030000	64766000	36172000	28594000	0	0	0	153220000	69670000	83551000	64476000	29591000	34885000	14900	2578	14133	90005;90006;90007	121574	121574			1	
FAEMYQPLLEK	1	Oxidation (M)	1383.6744	0.67443869	5413	Q9ULW6	NAP1L2	Nucleosome assembly protein 1-like 2	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			104.57	104.53	2	0.021584	92959	160511_QHF_FH_JSI10i_2	49.813	21.415			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14901	5413	14134	90008	121575	121575			1	
FAETQPK	1	Unmodified	819.41267	0.41266834	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.66	4	4	1			3	2			3	3	4	4	11.931	8.9881	2	0.0035003	7940	160511_QHF_FH_JSI9i_2	104.11	81.489			0.93303	0.97909	16.428	14	0	Median	1.2232	1.0238	15.991	3	0	Median	0.81045	0.97474	11.655	3	0	Median	0.98206	0.97892	23.809	4	0	Median	0.67964	0.73444	16.808	4	0	Linear	11413000000	6422200000	4990800000	2830800000	1520500000	1310400000	2866200000	1745900000	1120400000	2956800000	1511900000	1444800000	2759100000	1643900000	1115200000	14902	1284	14135	90009;90010;90011;90012;90013;90014;90015;90016;90017;90018;90019;90020;90021;90022	121576;121577;121578;121579;121580;121581;121582;121583;121584;121585;121586;121587	121584			12	
FAETQPKK	2	Unmodified	947.50763	0.50763136	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	7.9228	7.5643	2;3	0.013664	5551	160511_QHF_FH_JSI10i_2	35.295	24.422			0.83569	0.78397	63.569	6	4	Median	1.8061	1.5493	101.22	2	2	Median	0.86792	1.0725	NaN	1	0	Median	0.80466	0.81155	NaN	1	0	Median	0.54083	0.58384	6.4975	2	2	Median	558140000	301790000	256350000	173540000	63868000	109680000	165310000	95284000	70030000	79922000	51281000	28641000	139360000	91355000	48002000	14903	1284	14136	90023;90024;90025;90026;90027;90028	121588;121589;121590;121591;121592;121593;121594	121593			7	
FAEVEHVVNAILFLLSDR	0	Unmodified	2071.1102	0.11022574	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	100.89	93.374	3	1.1234E-24	52993	160513_QHF_FH_JSI9Kac_6	155.28	138.6			0.80318	0.74973	119	4	3	Median	1.3387	1.1195	NaN	1	0	Median	0.79621	0.95092	196.72	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48189	0.5021	NaN	1	1	Median	893110000	496490000	396620000	133920000	58962000	74961000	637060000	360870000	276190000	0	0	0	122130000	76657000	45469000	14904	3278	14137	90029;90030;90031;90032	121595;121596;121597;121598;121599	121595			5	
FAEVYFAQSQQK	1	Unmodified	1444.6987	0.69867961	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.34		7						8	6	6	6	3	6	57.027	49.924	2;3	1.7844E-07	27389	160513_QHF_FH_JSI10Kac_6	138.22	119.91			1.0288	1.042	47.563	21	18	Median	0.94146	0.79416	58.819	6	6	Median	0.96129	1.1624	42.954	6	5	Median	1.0303	1.0356	19.885	3	1	Median	0.98742	1.099	47.309	6	6	Median	608000000	338480000	269520000	142240000	83345000	58899000	138560000	74398000	64159000	127270000	66418000	60855000	199930000	114320000	85610000	14905	2508	14138	90033;90034;90035;90036;90037;90038;90039;90040;90041;90042;90043;90044;90045;90046;90047;90048;90049;90050;90051;90052;90053	121600;121601;121602;121603;121604;121605;121606;121607;121608;121609;121610;121611;121612;121613;121614;121615;121616;121617;121618;121619;121620;121621;121622	121622			23	
FAEYGEIK	1	Unmodified	955.4651	0.46509784	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14	0							2				1		1	42.418	32.454	2	0.0017561	19069	160513_QHF_FH_JSI12Kac_4	96.253	78.217			1.0663	1.1961	2.1087	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0093	1.1784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1266	1.214	NaN	1	0	Median	26335000	14484000	11851000	0	0	0	11344000	5530300	5813300	0	0	0	14991000	8954000	6037300	14906	5678	14139	90054;90055	121623;121624;121625	121624			3	
FAFDYATK	1	Unmodified	961.45453	0.45453316	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.891	51.506	2	0.0037119	44048	160511_QHF_FH_JSI12i_2	70.919	50.637			1.4454	1.6031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4454	1.6031	NaN	1	0	Median	140810000	57378000	83430000	0	0	0	0	0	0	0	0	0	140810000	57378000	83430000	14907	386	14140	90056	121626;121627	121626			2	
FAFQAEVNR	0	Unmodified	1080.5352	0.53524309	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.61	3	4	4					3	4	4	5	4	5	50.153	45.82	2	1.2638E-16	40096	160511_QHF_FH_JSI9i_2	178.83	158.31			1.0519	1.0736	16.323	18	0	Median	1.1635	0.95885	12.614	4	0	Median	0.79294	0.93152	15.266	5	0	Median	1.1246	1.1057	11.886	4	0	Median	1.1147	1.1632	20.352	5	0	Median	10928000000	5030700000	5897200000	1518300000	692300000	826010000	2342900000	1214000000	1128900000	3678600000	1657500000	2021100000	3387900000	1466800000	1921100000	14908	1057	14141	90057;90058;90059;90060;90061;90062;90063;90064;90065;90066;90067;90068;90069;90070;90071;90072;90073;90074	121628;121629;121630;121631;121632;121633;121634;121635;121636;121637;121638;121639;121640;121641;121642;121643;121644;121645;121646;121647;121648;121649;121650;121651;121652;121653;121654;121655;121656;121657;121658;121659;121660;121661;121662	121645			35	
FAFSPLSEEEEEDEQKEPMLK	2	Unmodified	2511.1363	0.13630165	3598	Q8NBN3	TMEM87A	Transmembrane protein 87A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		74.927	74.927	3	0.0069913	66820	160511_QHF_FH_JSI11i_3	38.577	35.524			0.86086	0.78641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86086	0.78641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51690000	30501000	21189000	0	0	0	0	0	0	51690000	30501000	21189000	0	0	0	14909	3598	14142	90075	121663;121664	121664			2	
FAFVEFADQNSVPR	0	Unmodified	1625.7838	0.78380622	3806	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	82.493	81.755	2	1.5495E-06	71956	160511_QHF_FH_JSI11i_2	160.18	136.09			1.0857	1.2311	28.957	5	2	Median	1.1621	1.0161	53.439	2	2	Median	1.0606	1.2964	NaN	1	0	Median	1.2514	1.2311	NaN	1	0	Median	1.0857	1.1744	NaN	1	0	Median	205580000	95307000	110270000	52279000	22082000	30197000	54518000	26584000	27934000	55768000	26531000	29237000	43015000	20110000	22906000	14910	3806	14143	90076;90077;90078;90079;90080	121665;121666;121667;121668;121669;121670;121671;121672;121673	121671			9	
FAGASIK	1	Unmodified	692.38573	0.38572531	132;5737	O00425;Q9Y6M1	IGF2BP3;IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2	no	no	0	0	0	0	By matching		By MS/MS		15.5	0.5								1	1	1		1		25.051	15.789	2	0.049671	9840	160513_QHF_FH_JSI11Kac_6	52.231	9.4579			1.2346	1.1198	22.405	2	0	Median	1.5418	1.312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98855	0.95569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14007000	6831500	7175300	4977200	1987400	2989800	0	0	0	9029600	4844000	4185500	0	0	0	14911	132;5737	14144	90081;90082	121674	121674			1	
FAGDKGYLTK	2	Acetyl (K)	1140.5815	0.58152458	1923	P60903	S100A10	Protein S100-A10	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	50.942	40.433	2	0.0081707	23670	160513_QHF_FH_JSI11Kac_4	61.765	33.94			0.52428	0.58179	75.03	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97579	1.1588	NaN	1	0	Median	0.269	0.25884	NaN	1	0	Median	0.52428	0.58179	NaN	1	0	Median	69184000	47685000	21499000	0	0	0	14578000	6695600	7882100	43038000	33350000	9687800	11568000	7639400	3928900	14912	1923	14145	90083;90084;90085	121675;121676	121675	1930;1931		2	
FAGGDYTTTIEAFISASGR	0	Unmodified	1962.9323	0.93232095	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.83		9	2						8	5	4	4	6	97.87	94.626	2;3	9.2662E-143	45045	160513_QHF_FH_JSI12Kac_6	308.83	283.12			0.92591	1.0249	19.54	18	5	Median	1.3873	1.1915	6.7906	4	1	Median	0.79325	0.96103	16.247	4	1	Median	0.95232	0.95166	28.355	4	2	Median	0.92591	1.0157	18.134	6	1	Median	2867500000	1406300000	1461100000	542920000	200300000	342620000	810670000	466120000	344560000	757130000	371450000	385680000	756770000	368480000	388290000	14913	878	14146	90086;90087;90088;90089;90090;90091;90092;90093;90094;90095;90096;90097;90098;90099;90100;90101;90102;90103;90104	121677;121678;121679;121680;121681;121682;121683;121684;121685;121686;121687;121688;121689;121690;121691;121692;121693	121691			17	
FAGGLHFSGPK	1	Unmodified	1116.5716	0.5716286	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	3.56		3	9						1	2	4	2	5	40.644	39.881	2;3	9.065E-06	33311	160511_QHF_FH_JSI10i_3	111.46	94.915			0.70336	0.75778	146.6	10	6	Median	0.80912	0.66249	43.163	2	1	Median	0.74646	0.8502	58.619	3	2	Median	0.5701	0.55488	90.497	2	1	Median	0.66276	0.6754	271.66	3	2	Median	5205200000	2985000000	2220300000	1210000000	547770000	662250000	1071400000	552890000	518490000	952930000	494980000	457950000	1970900000	1389300000	581580000	14914	2286	14147	90105;90106;90107;90108;90109;90110;90111;90112;90113;90114;90115;90116;90117	121694;121695;121696;121697;121698;121699;121700;121701;121702;121703;121704;121705;121706;121707;121708;121709;121710	121698			17	
FAGHSEAGGGSGDR	0	Unmodified	1303.5541	0.55414063	756	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.468	5.5158	2	0.0027065	3202	160511_QHF_FH_JSI11i_3	68.786	61.306			0.87127	0.85904	35.506	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71352	0.66831	NaN	1	1	Median	1.0639	1.1042	NaN	1	0	Median	75680000	38725000	36956000	0	0	0	0	0	0	35680000	19599000	16081000	40001000	19126000	20875000	14915	756	14148	90118;90119	121711;121712	121711			2	
FAGLHFFNPVPVMK	1	Oxidation (M)	1618.833	0.83300502	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	3	1	3	3	81.226	78.052	2;3	2.9168E-05	39048	160513_QHF_FH_JSI9Kac_6	91.914	80.97			0.9524	0.90873	9.2711	10	0	Median	0.96991	0.80208	10.147	3	0	Plateau	0.72268	0.84885	NaN	1	0	Median	0.89232	0.84596	11.652	3	0	Median	0.9352	0.98351	1.8274	3	0	Median	1635800000	766570000	869210000	452690000	221350000	231330000	197500000	103940000	93554000	436300000	182580000	253720000	549300000	258700000	290600000	14916	2770	14149	90120;90121;90122;90123;90124;90125;90126;90127;90128;90129	121713;121714;121715;121716;121717;121718;121719;121720;121721;121722;121723;121724;121725;121726;121727;121728;121729;121730;121731;121732;121733;121734;121735	121726		2133	23	
FAGLHFFNPVPVMK	1	Unmodified	1602.8381	0.8380904	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	5	2	4	4	89.567	86.416	2;3	8.1078E-15	78735	160511_QHF_FH_JSI12i_3	192.32	174.88			0.97596	0.91061	19.708	15	0	Median	0.97886	0.81458	14.267	5	0	Median	0.7801	0.914	13.409	2	0	Median	1.0575	0.99579	28.971	4	0	Median	0.85934	0.90281	23.491	4	0	Median	7085300000	3253300000	3831900000	1275200000	589150000	686060000	1127900000	642900000	484960000	2114700000	928430000	1186300000	2567500000	1092900000	1474600000	14917	2770	14149	90130;90131;90132;90133;90134;90135;90136;90137;90138;90139;90140;90141;90142;90143;90144	121736;121737;121738;121739;121740;121741;121742;121743;121744;121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756;121757;121758;121759;121760;121761;121762;121763;121764;121765;121766;121767;121768;121769;121770;121771;121772;121773;121774;121775;121776;121777	121773			42	
FAGLHFFNPVPVMKLVEVIK	2	Acetyl (K)	2326.2912	0.29116699	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	98.764	89.433	3	7.2999E-08	51410	160513_QHF_FH_JSI9Kac_6	95.814	87.32			0.72935	0.77528	83.271	3	1	Plateau	0.89558	0.76546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.3995	3.2588	NaN	1	1	Median	0.72935	0.77528	NaN	1	0	Median	434680000	187010000	247670000	150400000	73072000	77329000	0	0	0	111290000	13760000	97528000	172990000	100180000	72810000	14918	2770	14150	90145;90146;90147	121778;121779;121780	121779	2671;2672		3	
FAGNPWYYGK	1	Unmodified	1201.5556	0.55564418	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.73	2	6							4	2	2	4	4	57.418	53.772	2	2.3112E-05	46696	160511_QHF_FH_JSI11i_2	107.66	87.878			1.2722	1.2352	26.039	12	5	Median	1.5701	1.3109	10.351	2	1	Median	0.85792	1.0268	60.827	2	1	Median	1.1318	1.1188	23.785	4	1	Median	1.2785	1.3562	12.929	4	2	Median	762630000	348000000	414620000	46262000	17913000	28349000	84336000	44061000	40276000	362800000	155580000	207230000	269230000	130450000	138770000	14919	1095	14151	90148;90149;90150;90151;90152;90153;90154;90155;90156;90157;90158;90159	121781;121782;121783;121784;121785;121786;121787;121788;121789;121790;121791;121792	121786			11	
FAGQMGIQLFETSAK	1	Unmodified	1626.8076	0.80757813	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	82.099	81.796	2	2.4614E-16	71042	160511_QHF_FH_JSI12i_3	169.23	152.56			1.4345	1.3394	51.731	5	4	Median	4.1422	3.4745	NaN	1	1	Median	1.6369	1.9926	NaN	1	1	Median	1.209	1.1324	23.741	2	2	Median	1.1284	1.1215	NaN	1	0	Median	422100000	182290000	239810000	62021000	16590000	45431000	72850000	30474000	42376000	156940000	77322000	79615000	130290000	57904000	72385000	14920	2649	14152	90160;90161;90162;90163;90164	121793;121794;121795;121796;121797;121798	121798			6	
FAGSAGWEGTESLK	1	Unmodified	1438.6729	0.67285879	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	2	2		51.054	50.254	2	8.5785E-12	43363	160511_QHF_FH_JSI11i_2	199.7	183.81			1.1954	1.2568	17.259	5	5	Median	1.2846	1.0706	NaN	1	1	Median	1.1021	1.366	11.784	2	2	Median	1.1106	1.12	22.169	2	2	Median	NaN	NaN	NaN	0	0	Median	481120000	235050000	246070000	69063000	30110000	38953000	138880000	71135000	67746000	273180000	133800000	139370000	0	0	0	14921	2353	14153	90165;90166;90167;90168;90169	121799;121800;121801;121802;121803	121801			5	
FAGVDIR	0	Unmodified	776.41809	0.41808807	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	7.14	2	2						1	3	2	1	3	2	42.83	37.763	2	0.0063181	32533	160511_QHF_FH_JSI12i_2	91.584	13.836			0.91036	0.98484	19.366	8	0	Median	1.4022	1.191	6.5867	2	0	Median	0.84336	1.013	NaN	1	0	Median	0.65838	0.68669	14.847	3	0	Plateau	0.95836	1.0204	9.0029	2	0	Median	3046500000	1516800000	1529700000	76281000	33011000	43270000	42270000	23570000	18700000	1351000000	706980000	643980000	1577000000	753230000	823790000	14922	1987	14154	90170;90171;90172;90173;90174;90175;90176;90177	121804;121805;121806;121807;121808	121805			5	
FAGVFHVEK	1	Unmodified	1032.5393	0.53926584	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.34	6.06		10	13						9	9	9	7	7	42.719	39.443	2;3	0.00013074	33277	160511_QHF_FH_JSI12i_3	70.1	61.237			0.84426	0.83489	81.556	32	25	Median	0.91317	0.79653	94.902	9	8	Median	0.75239	0.8751	88.27	9	8	Median	1.0338	1.0127	79.141	7	4	Median	0.78054	0.78836	74.819	7	5	Median	18473000000	8241600000	10231000000	2484800000	1082400000	1402400000	3215900000	1685500000	1530400000	7222700000	3147400000	4075300000	5549300000	2326300000	3223100000	14923	1089	14155	90178;90179;90180;90181;90182;90183;90184;90185;90186;90187;90188;90189;90190;90191;90192;90193;90194;90195;90196;90197;90198;90199;90200;90201;90202;90203;90204;90205;90206;90207;90208;90209	121809;121810;121811;121812;121813;121814;121815;121816;121817;121818;121819;121820;121821;121822;121823;121824;121825;121826;121827;121828;121829;121830;121831;121832;121833;121834;121835;121836;121837;121838;121839;121840;121841;121842;121843;121844;121845;121846;121847;121848;121849	121841			41	
FAGVFHVEKNGR	1	Acetyl (K)	1401.7153	0.71533272	1089	P16070	CD44	CD44 antigen	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		55.826	46.099	2	0.033338	24871	160513_QHF_FH_JSI11Kac_6	51.436	35.774			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4409300	4409300	0	0	0	0	0	0	0	4409300	4409300	0	0	0	0	14924	1089	14156	90210	121850	121850			1	
FAHCTVLTIAHR	0	Unmodified	1424.7347	0.73468796	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0		By MS/MS		By matching	16	0									3		2		1	43.178	34.265	3;4	0.00022085	18941	160513_QHF_FH_JSI10Kac_6	76.522	61.135			1.0444	1.261	22.711	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0119	1.2033	6.6247	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6393	1.7682	NaN	1	0	Median	41998000	15735000	26263000	0	0	0	38322000	14651000	23670000	0	0	0	3676700	1083700	2593000	14925	292	14157	90211;90212;90213	121851;121852;121853;121854	121851			4	
FAHIDGDHLTLLNVYHAFK	1	Unmodified	2210.1273	0.12727278	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.77			19						7	3	4	1	18	90.37	88.445	3;4;5	2.2426E-19	40881	160513_QHF_FH_JSI10Kac_6	145.55	136.84			1.1657	1.1939	39.609	26	11	Median	1.4278	1.2182	26.986	3	1	Plateau	0.57494	0.68397	78.411	4	2	Median	0.87317	0.8109	NaN	1	1	Median	1.1928	1.2445	29.117	18	7	Median	2153500000	1095700000	1057800000	469910000	204760000	265150000	1096800000	620460000	476380000	13039000	8622600	4416100	573680000	261810000	311870000	14926	300	14158	90214;90215;90216;90217;90218;90219;90220;90221;90222;90223;90224;90225;90226;90227;90228;90229;90230;90231;90232;90233;90234;90235;90236;90237;90238;90239	121855;121856;121857;121858;121859;121860;121861;121862;121863;121864;121865;121866;121867;121868;121869;121870;121871;121872;121873;121874;121875;121876;121877;121878;121879;121880;121881;121882;121883;121884;121885;121886;121887	121883			31	
FAHTNVESLVNEYDDNGEGIILFR	0	Unmodified	2751.314	0.31402351	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	100.26	100.23	3	0.0064742	88806	160511_QHF_FH_JSI10i_2	33.187	24.693			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14927	1344	14159	90240;90241	121888;121889	121888			2	
FAHTNVESLVNEYDDNGEGIILFRPSHLTNK	1	Unmodified	3528.7274	0.72736056	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			82.439	76.846	5	1.3653E-14	42541	160513_QHF_FH_JSI10Kac_6	97.771	92.715			0.6196	0.71603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6196	0.71603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81973000	54079000	27894000	0	0	0	81973000	54079000	27894000	0	0	0	0	0	0	14928	1344	14160	90242	121890	121890			1	
FAIGSQVSEHSIIK	1	Unmodified	1514.8093	0.80929269	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.44		9	7						4	3	5	6	6	58.587	55.931	2;3	1.3603E-65	48076	160511_QHF_FH_JSI12i_3	231.66	206.78			0.98366	0.90656	28.835	18	3	Median	1.0791	0.89495	15.538	3	0	Median	0.8938	1.0367	27.181	5	0	Median	0.93637	0.91833	19.335	5	1	Median	0.7814	0.84592	45.212	5	2	Median	4145400000	2098400000	2047100000	290690000	129470000	161220000	653440000	327800000	325640000	1295400000	708750000	586640000	1905900000	932360000	973560000	14929	1410	14161	90243;90244;90245;90246;90247;90248;90249;90250;90251;90252;90253;90254;90255;90256;90257;90258;90259;90260;90261;90262	121891;121892;121893;121894;121895;121896;121897;121898;121899;121900;121901;121902;121903;121904;121905;121906;121907;121908;121909;121910;121911;121912;121913;121914;121915;121916;121917;121918;121919;121920;121921;121922;121923;121924;121925;121926;121927	121923			37	
FAIQDISVEETSAK	1	Unmodified	1536.7672	0.7671531	361;1021	O43707;Q08043;P12814;P35609	ACTN4;ACTN3;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.46	4	6	1				2			3	4	3	3	69.318	66.945	2	2.2088E-10	59764	160511_QHF_FH_JSI9i_1	169.65	139.09			0.92915	0.9979	62.87	12	9	Median	0.39567	0.32749	17.174	2	1	Median	0.51668	0.6013	30.904	4	3	Median	1.6662	1.6431	27.06	3	2	Plateau	1.2728	1.3951	20.821	3	3	Median	926300000	480500000	445810000	175300000	122270000	53034000	260100000	174320000	85778000	282150000	104330000	177820000	208750000	79579000	129170000	14930	361;1021	14162	90263;90264;90265;90266;90267;90268;90269;90270;90271;90272;90273;90274;90275	121928;121929;121930;121931;121932;121933;121934;121935;121936;121937;121938;121939;121940;121941;121942;121943;121944	121938			17	
FAIRPDKK	2	Unmodified	973.5709	0.57090032	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	16.011	15.495	3	0.027379	12374	160511_QHF_FH_JSI11i_3	44.349	30.77			0.6601	0.64875	12.855	4	0	Median	0.81126	0.64771	NaN	1	0	Median	0.63012	0.72537	NaN	1	0	Median	0.69151	0.6498	NaN	1	0	Median	0.52813	0.53257	NaN	1	0	Median	2237000000	1059600000	1177400000	587590000	213320000	374270000	556070000	278650000	277420000	1012900000	521690000	491260000	80421000	45981000	34439000	14931	764	14163	90276;90277;90278;90279	121945	121945			1	
FAIVMMGR	0	Unmodified	923.47211	0.47211425	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	68.201	64.716	2	2.0544E-11	34241	160513_QHF_FH_JSI9Kac_6	159.75	139.2			0.94437	0.95679	17.865	12	0	Median	1.1705	0.99088	21.582	3	0	Plateau	1.0772	1.2916	16.308	3	0	Plateau	1.1541	1.1019	19.016	3	0	Plateau	0.91283	0.93198	10.85	3	0	Plateau	1607300000	790180000	817080000	323840000	146680000	177150000	606580000	319210000	287370000	424310000	191780000	232530000	252540000	132510000	120030000	14932	3922	14164	90280;90281;90282;90283;90284;90285;90286;90287;90288;90289;90290;90291	121946;121947;121948;121949;121950;121951;121952;121953;121954;121955;121956;121957;121958;121959	121953			14	
FAIVMMGR	0	2 Oxidation (M)	955.46194	0.4619435	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	44.072	34.553	2	0.0033131	18076	160513_QHF_FH_JSI12Kac_6	64.776	60.42			1.0691	1.0485	10.062	6	0	Median	1.229	1.0459	6.8387	2	0	Median	0.90998	1.0683	9.1256	2	0	Median	1.2343	1.2139	NaN	1	0	Median	0.87211	0.9242	NaN	1	0	Median	185200000	84304000	100890000	66678000	28947000	37731000	61723000	29685000	32038000	25674000	11172000	14503000	31124000	14500000	16623000	14933	3922	14164	90292;90293;90294;90295;90296;90297	121960;121961;121962;121963;121964;121965	121964		2352;2353	6	
FAIVMMGR	0	Oxidation (M)	939.46703	0.46702887	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.331								1	7	2	3	1	2	60.286	50.877	2	0.018147	26429	160513_QHF_FH_JSI11Kac_6	54.787	44.708			0.9936	1.1227	11.2	8	0	Median	1.4499	1.25	6.6656	2	0	Median	0.99738	1.1877	12.71	3	0	Plateau	1.1055	1.0819	NaN	1	0	Median	0.92231	1.0027	3.5313	2	0	Median	188610000	92557000	96056000	52251000	22883000	29368000	90087000	47211000	42876000	13968000	6190700	7777400	32307000	16273000	16035000	14934	3922	14164	90298;90299;90300;90301;90302;90303;90304;90305	121966;121967;121968;121969;121970;121971;121972;121973	121966		2352;2353	8	
FAIYIPLFLPMAVPILLSLVK	1	Unmodified	2357.4201	0.4200559	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	106.49	98.961	2;3	5.793E-59	59716	160513_QHF_FH_JSI10Kac_6	193.96	186.67			1.2472	1.3622	8.5725	4	0	Median	1.556	1.3215	NaN	1	0	Median	1.2382	1.4728	6.7567	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1872	1.2683	NaN	1	0	Median	905620000	398780000	506830000	32863000	13288000	19576000	842880000	371590000	471300000	0	0	0	29870000	13908000	15962000	14935	4234	14165	90306;90307;90308;90309;90310	121974;121975;121976;121977;121978;121979;121980;121981;121982	121981			9	
FAIYIPLFLPMAVPILLSLVK	1	Oxidation (M)	2373.415	0.41497052	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	105.68	98.094	3	0.0002872	52855	160513_QHF_FH_JSI12Kac_6	83.253	74.863			0.9986	1.1178	14.541	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.2388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94314	1.0086	NaN	1	1	Median	293320000	109420000	183900000	0	0	0	197410000	75019000	122390000	0	0	0	95911000	34399000	61512000	14936	4234	14165	90311;90312	121983;121984	121983		2418	2	
FAKPVYPGQTLQTEMWK	2	Acetyl (K);Oxidation (M)	2081.0292	0.029198223	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15.7	0.471								1	2			2	1	79.167	69.386	3	4.0968E-05	38079	160513_QHF_FH_JSI11Kac_6	88.992	73.902			0.78091	0.76635	12.63	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86184	0.8377	17.636	2	0	Median	0.76026	0.80915	NaN	1	0	Median	106630000	65970000	40661000	0	0	0	0	0	0	60844000	36168000	24676000	45787000	29802000	15985000	14937	1747	14166	90313;90314;90315	121985;121986;121987;121988;121989	121985	1763	1431	5	
FAKPVYPGQTLQTEMWK	2	Acetyl (K)	2065.0343	0.034283601	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	83.218	74.842	2;3	4.8081E-112	42457	160513_QHF_FH_JSI10Kac_6	257.8	216.4			0.93807	0.8785	166.6	9	4	Median	3.5207	3.0234	182.45	2	1	Median	0.67398	0.80133	13.003	2	0	Median	0.38653	0.36698	126.79	2	1	Median	1.193	1.2585	250.09	3	2	Median	963450000	572570000	390880000	125080000	25323000	99757000	347870000	215460000	132410000	282590000	209720000	72867000	207910000	122070000	85840000	14938	1747	14166	90316;90317;90318;90319;90320;90321;90322;90323;90324	121990;121991;121992;121993;121994;121995;121996;121997;121998;121999;122000;122001;122002;122003	122002	1763		14	
FAKQYINAIK	2	Acetyl (K)	1236.6867	0.68665836	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		67.808	56.921	2	0.039498	30709	160513_QHF_FH_JSI11Kac_5	52.255	40.029			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1407200	1407200	0	0	0	0	0	0	0	1407200	1407200	0	0	0	0	14939	2636	14167	90325	122004	122004			1	
FAKSNQVSR	1	Acetyl (K)	1077.5567	0.55670682	3450	Q8IXW5	RPAP2	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	24.71	15.372	2	0.024777	10302	160513_QHF_FH_JSI11Kac_5	50.127	25.232			0.89129	1.0048	13.526	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81937	0.9699	19.742	2	0	Median	1.1005	1.0946	NaN	1	0	Median	0.84884	0.9223	NaN	1	0	Median	29293000	16164000	13129000	0	0	0	6950800	3956600	2994300	16782000	9214900	7567200	5559700	2992200	2567500	14940	3450	14168	90326;90327;90328;90329	122005;122006	122006	2861		2	
FAKVENQYQLLK	2	Acetyl (K)	1521.8191	0.81912909	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.379	62.648	2	0.015225	33445	160513_QHF_FH_JSI11Kac_5	60.434	42.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2261500	2261500	0	0	0	0	0	0	0	2261500	2261500	0	0	0	0	14941	3203	14169	90330	122007	122007	2795		1	
FALACNASDK	1	Unmodified	1095.5019	0.50189405	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	31.85	30.995	2	0.0069734	26238	160511_QHF_FH_JSI11i_2	61.691	36.816			3.8763	4.118	2.0292	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1388	4.1775	NaN	1	1	Median	3.6304	4.0593	NaN	1	1	Median	204210000	49249000	154960000	0	0	0	0	0	0	133370000	33979000	99393000	70837000	15270000	55567000	14942	1429	14170	90331;90332	122008;122009	122009			2	
FALDMAR	0	Unmodified	822.40581	0.40580882	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.638	47.655	2	0.0085662	40994	160511_QHF_FH_JSI11i_2	82.913	39.913			1.0277	1.0573	2.323	4	0	Median	1.2351	1.0357	NaN	1	0	Median	0.85845	1.0659	NaN	1	0	Median	1.0784	1.0487	NaN	1	0	Median	0.97928	1.0929	NaN	1	0	Median	446310000	233280000	213030000	74730000	39217000	35513000	102440000	54145000	48292000	148080000	71952000	76128000	121060000	67965000	53096000	14943	2403	14171	90333;90334;90335;90336	122010;122011;122012;122013;122014;122015;122016	122014			7	
FALEVAAK	1	Unmodified	847.48035	0.48035398	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0		By matching		By MS/MS	10.7	6.13		1						2			1		2	55.983	48.404	2	0.017517	24780	160513_QHF_FH_JSI12Kac_5	58.917	21.272			0.70621	0.79461	67.903	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56713	0.67186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2199	1.3657	76.594	2	0	Median	97227000	37902000	59324000	0	0	0	5124300	3200700	1923500	0	0	0	92102000	34702000	57401000	14944	1862	14172	90337;90338;90339	122017;122018	122018			2	
FALEVPGLR	0	Unmodified	1000.5706	0.57056597	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.301	79.505	2	1.6761E-05	69825	160511_QHF_FH_JSI11i_2	108.46	91.497			0.87609	0.97055	18.925	4	1	Median	0.81232	0.71808	NaN	1	0	Median	0.73941	0.89026	NaN	1	1	Median	1.0569	1.0581	NaN	1	0	Median	0.94487	1.0793	NaN	1	0	Median	211640000	102970000	108670000	30900000	18626000	12274000	53262000	31149000	22113000	74028000	28549000	45480000	53449000	24650000	28799000	14945	5108	14173	90340;90341;90342;90343	122019;122020;122021;122022	122020			4	
FALGIFAINEAVESGDVGK	1	Unmodified	1935.9942	0.99419293	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.72		3	4						7	3	1	5	5	98.227	93.568	2;3	6.8658E-223	46373	160513_QHF_FH_JSI12Kac_6	324.81	278.21			0.76257	0.74092	44.342	14	8	Median	1.1473	0.98605	69.894	3	3	Plateau	0.57638	0.71202	NaN	1	0	Median	0.91714	0.88414	29.097	5	2	Median	0.59965	0.62988	39.804	5	3	Median	2383600000	1364100000	1019500000	426810000	274170000	152630000	100940000	68136000	32804000	824050000	375840000	448210000	1031800000	645960000	385860000	14946	1600	14174	90344;90345;90346;90347;90348;90349;90350;90351;90352;90353;90354;90355;90356;90357	122023;122024;122025;122026;122027;122028;122029;122030;122031;122032;122033;122034;122035;122036;122037;122038;122039	122037			17	
FALGLSGGSLVSMLAR	0	Unmodified	1577.8599	0.85994805	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			93.471	87.751	2	6.5726E-07	50311	160513_QHF_FH_JSI10Kac_6	162.31	121.72			0.73649	0.87862	39.178	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73649	0.87862	39.178	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132260000	70141000	62124000	0	0	0	132260000	70141000	62124000	0	0	0	0	0	0	14947	677	14175	90358;90359	122040;122041	122040			2	
FALGSVVAVTK	1	Unmodified	1090.6386	0.63864553	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	70.23	69.637	2	0.00028957	60205	160511_QHF_FH_JSI12i_3	76.943	68.723			1.2685	1.2916	38.238	4	1	Median	NaN	NaN	NaN	0	0	Median	1.297	1.453	NaN	1	0	Median	0.95079	0.91816	52.926	2	1	Median	1.2407	1.2497	NaN	1	0	Median	205710000	100520000	105190000	0	0	0	22339000	9225700	13113000	99981000	54115000	45866000	83391000	37177000	46214000	14948	2175	14176	90360;90361;90362;90363	122042;122043;122044	122044			3	
FALITWIGENVSGLQR	0	Unmodified	1802.9679	0.9679186	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	96.063	87.955	2;3	1.9689E-88	47409	160513_QHF_FH_JSI12Kac_6	284.42	248.9			1.1449	1.1021	86.025	9	1	Median	1.4603	1.2452	16.943	2	0	Median	0.93169	1.1021	147.04	3	1	Median	1.2775	1.2064	15.216	2	0	Median	0.70887	0.74229	8.5053	2	0	Median	6719200000	3300100000	3419100000	1308900000	575880000	733030000	2499300000	1360500000	1138900000	1820200000	708190000	1112000000	1090800000	655570000	435240000	14949	2487	14177	90364;90365;90366;90367;90368;90369;90370;90371;90372	122045;122046;122047;122048;122049;122050;122051;122052;122053;122054;122055;122056;122057;122058;122059;122060	122054			16	
FALNYLQLLVHPNPPSVLFGADK	1	Unmodified	2552.3791	0.37913037	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	1	1	2	4	99.618	95.413	3	7.9368E-90	50191	160513_QHF_FH_JSI9Kac_6	222.93	195.61			0.80999	0.81328	17.08	8	2	Median	1.141	0.98162	NaN	1	0	Median	0.84592	1.0107	NaN	1	0	Median	0.75776	0.7106	10.618	2	0	Median	0.77876	0.8017	15.25	4	2	Median	2790500000	1467100000	1323400000	565190000	254250000	310930000	644050000	346220000	297820000	742280000	383810000	358470000	839020000	482840000	356180000	14950	3888	14178	90373;90374;90375;90376;90377;90378;90379;90380	122061;122062;122063;122064;122065;122066;122067;122068;122069;122070;122071	122064			11	
FALPSPQHILGLPVGQHIYLSAR	0	Unmodified	2513.3907	0.39069811	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	2	4	2	3	91.618	86.202	3;4	9.7019E-23	44159	160513_QHF_FH_JSI11Kac_6	140.87	126.86			1.0717	1.1526	21.601	10	2	Median	1.3766	1.1681	NaN	1	0	Median	0.8178	0.96303	19.205	4	2	Linear	1.0348	0.96111	31.416	2	0	Median	1.0715	1.1374	26.944	3	0	Median	2436200000	1210000000	1226300000	467320000	191040000	276280000	1065000000	556410000	508610000	379830000	188010000	191820000	524080000	274500000	249580000	14951	764	14179	90381;90382;90383;90384;90385;90386;90387;90388;90389;90390;90391	122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084	122075			12	
FALPTAHHTLGLPVGK	1	Unmodified	1657.9304	0.93041088	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							3	4	3	3	64.766	63.947	2;3;4	7.4734E-07	56263	160511_QHF_FH_JSI11i_3	125.73	114.67			1.002	0.99794	16.142	13	3	Median	1.1711	0.95237	14.153	3	0	Median	0.84592	0.95919	15.157	4	2	Median	1.1232	1.0379	14.779	3	0	Median	1.002	0.99794	22.017	3	1	Median	3407600000	1627300000	1780300000	519610000	202770000	316840000	674610000	375590000	299010000	986530000	473670000	512870000	1226800000	575250000	651600000	14952	5309	14180	90392;90393;90394;90395;90396;90397;90398;90399;90400;90401;90402;90403;90404	122085;122086;122087;122088;122089;122090;122091;122092;122093;122094;122095;122096;122097;122098;122099;122100;122101;122102;122103	122088			18	
FALPYIR	0	Unmodified	878.50142	0.50142377	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	71.721	70.875	2	1.3668E-06	61322	160511_QHF_FH_JSI12i_2	154.34	44.166			1.1551	1.1253	20.129	8	0	Median	1.4628	1.2459	20.333	2	0	Median	0.92244	1.104	18.066	2	0	Median	1.028	1.01	21.213	2	0	Median	1.057	1.1368	34.602	2	0	Median	1030500000	489200000	541320000	173500000	75546000	97957000	234160000	115550000	118600000	385770000	175370000	210400000	237080000	122730000	114350000	14953	843	14181	90405;90406;90407;90408;90409;90410;90411;90412	122104;122105;122106;122107;122108;122109;122110;122111;122112;122113;122114;122115;122116;122117;122118;122119;122120;122121	122108			18	
FALTFGLDQLK	1	Unmodified	1251.6863	0.68632401	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	96.864	96.586	2	4.8585E-07	85475	160511_QHF_FH_JSI11i_2	115.71	0			0.93976	1.019	13.835	6	1	Median	0.8584	0.75938	NaN	1	0	Median	0.91182	1.0738	NaN	1	0	Median	0.93976	0.94753	3.9611	2	0	Median	1.0008	1.0787	1.7348	2	1	Median	114490000	65574000	48911000	16298000	9304100	6993800	16310000	9884400	6425900	44209000	27332000	16877000	37668000	19054000	18614000	14954	3521	14182	90413;90414;90415;90416;90417;90418	122122;122123;122124;122125;122126;122127;122128;122129;122130;122131	122128			10	
FALTVVR	0	Unmodified	804.48577	0.48577371	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	2	3	54.857	52.859	2	0.005328	46743	160511_QHF_FH_JSI10i_2	101.72	66.83			1.0081	1.0491	21.274	7	3	Median	1.5198	1.2838	NaN	1	0	Median	0.86723	1.0491	NaN	1	1	Median	0.95262	0.93479	2.254	2	2	Median	1.3168	1.4391	28.113	3	0	Plateau	853040000	382690000	470350000	94259000	43521000	50738000	143170000	70564000	72602000	336690000	172500000	164190000	278930000	96111000	182820000	14955	4915	14183	90419;90420;90421;90422;90423;90424;90425	122132;122133;122134;122135;122136;122137	122136			6	
FALVEVIAMIK	1	Unmodified	1232.7203	0.72026667	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.46		1	2						5	3	2	2	1	98.472	91.782	2	6.2279E-15	48351	160513_QHF_FH_JSI12Kac_6	156.92	112.71			0.96143	1.0253	27.662	5	2	Median	1.4224	1.2362	33.794	3	2	Median	0.72419	0.82984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96143	1.0253	NaN	1	0	Median	232000000	104070000	127930000	107820000	41167000	66656000	58992000	34359000	24633000	0	0	0	65188000	28542000	36646000	14956	3229	14184	90426;90427;90428;90429;90430;90431;90432;90433	122138;122139;122140;122141;122142;122143;122144;122145;122146	122145			9	
FALVFPLMYHTWNGIR	0	Oxidation (M)	1980.008	0.0080092714	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	3	2	4	91.132	82.774	2;3	9.563E-75	47601	160513_QHF_FH_JSI10Kac_6	221.6	198.68			0.90978	0.97653	13.274	13	5	Median	1.2321	1.0406	20.983	4	3	Median	0.77626	0.92215	6.0475	3	0	Plateau	1.1238	1.0575	11.272	2	1	Median	0.88935	0.93717	12.175	4	1	Median	8345400000	4086800000	4258600000	2320600000	1089900000	1230700000	2824200000	1532500000	1291700000	2177800000	926430000	1251400000	1022900000	537990000	484870000	14957	4298	14185	90434;90435;90436;90437;90438;90439;90440;90441;90442;90443;90444;90445;90446	122147;122148;122149;122150;122151;122152;122153;122154;122155;122156;122157;122158;122159;122160;122161;122162;122163;122164;122165	122164		2434	19	
FALVFPLMYHTWNGIR	0	Unmodified	1964.0131	0.013094649	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	94.732	86.34	2;3	4.6576E-104	48537	160513_QHF_FH_JSI11Kac_6	257.09	235.22			0.79986	0.84051	21.421	8	3	Median	1.1764	1.0636	6.8632	2	1	Median	0.88769	1.0579	30.614	2	0	Median	0.78152	0.74978	3.1564	2	1	Median	0.74779	0.78132	8.4119	2	1	Median	15917000000	8934400000	6982200000	6950300000	3696100000	3254200000	870920000	447530000	423390000	5500900000	3168300000	2332700000	2594500000	1622500000	971970000	14958	4298	14185	90447;90448;90449;90450;90451;90452;90453;90454	122166;122167;122168;122169;122170;122171;122172;122173;122174;122175;122176;122177	122166			12	
FALWVGR	0	Unmodified	847.47046	0.47045799	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.436	66.064	2	0.02157	36363	160513_QHF_FH_JSI10Kac_6	61.123	33.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14959	591	14186	90455	122178	122178			1	
FAMEPEEFDSDTLR	0	Unmodified	1685.7243	0.72430201	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	72.962	72.267	2	1.0982E-14	65446	160511_QHF_FH_JSI10i_1	160.18	154.87			0.94671	0.89269	11.031	8	1	Median	1.054	0.87701	0.27939	2	1	Median	0.70018	0.85277	1.0368	2	0	Median	0.9282	0.91025	0.52777	2	0	Median	1.0287	1.098	8.3888	2	0	Median	837790000	424320000	413470000	177570000	86451000	91117000	235730000	133260000	102460000	276490000	130750000	145740000	148000000	73854000	74147000	14960	1034	14187	90456;90457;90458;90459;90460;90461;90462;90463	122179;122180;122181;122182;122183;122184;122185;122186;122187;122188;122189;122190;122191;122192	122185			14	
FAMEPEEFDSDTLREFVTAFK	1	Unmodified	2508.1519	0.15189213	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	101.85	101.86	3	5.2428E-15	88594	160511_QHF_FH_JSI12i_3	128.14	120.86			1.0746	1.0704	12.034	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2123	1.1655	NaN	1	0	Median	0.95254	0.98309	NaN	1	0	Median	768510000	366550000	401960000	0	0	0	0	0	0	454470000	198160000	256310000	314040000	168390000	145640000	14961	1034	14188	90464;90465	122193;122194;122195;122196	122196			4	
FAMEQSFSADTGGGGR	0	Unmodified	1616.6889	0.68891956	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	3	1	51.248	50.561	2	7.7097E-22	44163	160511_QHF_FH_JSI9i_2	137.59	126.05			0.99929	0.99941	14.857	4	0	Median	NaN	NaN	NaN	0	0	Median	0.74738	0.84613	NaN	1	0	Median	0.99929	0.99941	6.7925	2	0	Median	1.1013	1.2016	NaN	1	0	Median	112830000	58811000	54023000	0	0	0	23061000	11434000	11628000	58709000	33145000	25564000	31064000	14233000	16831000	14962	2947	14189	90466;90467;90468;90469;90470;90471	122197;122198;122199;122200;122201;122202;122203;122204	122202			8	
FAMKEMGTPDVR	1	Acetyl (K)	1422.6636	0.66355643	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		70.19	59.356	2	0.0013121	31899	160513_QHF_FH_JSI11Kac_5	82.171	64.307			0.62238	0.61766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62238	0.61766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4478700	2321300	2157400	0	0	0	0	0	0	4478700	2321300	2157400	0	0	0	14963	2035	14190	90472	122205	122205	2078		1	
FAMVAPDVQIEDGK	1	Unmodified	1518.7388	0.73882986	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.707	5	2	1							1	3	2	2	71.519	70.914	2	2.9666E-21	64618	160511_QHF_FH_JSI11i_1	171.62	155.39			0.90264	0.96986	10.853	6	2	Median	1.1718	0.95466	NaN	1	0	Median	0.85436	1.0025	20.094	2	2	Median	0.86544	0.85589	NaN	1	0	Median	0.90264	0.98777	0.35405	2	0	Median	1885300000	997320000	887970000	278850000	122780000	156070000	779090000	463060000	316030000	419810000	195020000	224790000	407540000	216460000	191080000	14964	5254	14191	90473;90474;90475;90476;90477;90478;90479;90480	122206;122207;122208;122209;122210;122211;122212;122213;122214;122215;122216;122217	122207			12	
FANDGSFLQQFLK	1	Unmodified	1513.7565	0.75652884	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.338	98.348	2	0.00060169	85303	160511_QHF_FH_JSI12i_3	86.624	67.844			0.65395	0.6511	20.758	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60046	0.56221	NaN	1	1	Median	0.7122	0.75404	NaN	1	1	Median	78496000	54681000	23815000	0	0	0	0	0	0	31284000	22529000	8754600	47212000	32152000	15060000	14965	3435	14192	90481;90482	122218;122219	122219			2	
FANHVSGTLETALGK	1	Unmodified	1543.7995	0.79945628	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.496		7	9							3	4	4	5	52.323	51.762	2;3	2.6331E-07	45613	160511_QHF_FH_JSI11i_3	144.29	136.37			0.81343	0.89533	48.387	15	13	Median	1.0246	0.89533	38.379	3	2	Median	0.7108	0.87856	44.268	4	3	Median	1.0746	1.0016	54.589	4	4	Median	0.94026	0.96185	67.732	4	4	Median	1584000000	866800000	717190000	86711000	40178000	46532000	123620000	67487000	56133000	519950000	246600000	273340000	853710000	512530000	341180000	14966	417	14193	90483;90484;90485;90486;90487;90488;90489;90490;90491;90492;90493;90494;90495;90496;90497;90498	122220;122221;122222;122223;122224;122225;122226;122227;122228;122229;122230;122231;122232;122233;122234	122223			14	
FANSLVGVQQQLQAFNTYR	0	Unmodified	2183.1124	0.112351	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.923	91.879	3	0.0057327	79714	160511_QHF_FH_JSI12i_3	43.164	28.469			1.7189	1.7301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7189	1.7301	NaN	1	1	Median	28403000	6610300	21792000	0	0	0	0	0	0	0	0	0	28403000	6610300	21792000	14967	2162	14194	90499	122235;122236	122236			2	
FANYIDK	1	Unmodified	869.42832	0.42831841	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	29.801	28.995	2	0.013862	24476	160511_QHF_FH_JSI11i_2	68.787	45.858			0.84867	0.9278	108.42	5	4	Median	0.35997	0.30084	NaN	1	1	Median	1.8301	2.2535	NaN	1	1	Median	0.91451	0.92524	163.04	2	2	Median	0.84867	0.9278	NaN	1	0	Median	1231700000	563280000	668460000	223920000	85582000	138340000	221850000	98391000	123460000	597920000	256910000	341010000	188040000	122390000	65650000	14968	913	14195	90500;90501;90502;90503;90504	122237;122238;122239;122240;122241	122240			5	
FAPAIMQALK	1	Unmodified	1088.6052	0.60523691	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		73.608	73.608	2	0.014375	65630	160511_QHF_FH_JSI11i_3	52.716	30.585			0.15404	0.14563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15404	0.14563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25574000	20628000	4946100	0	0	0	0	0	0	25574000	20628000	4946100	0	0	0	14969	3470	14196	90505	122242	122242			1	
FAPFEIK	1	Unmodified	850.45889	0.45889025	2351	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	62.22	61.311	2	0.010619	54372	160511_QHF_FH_JSI10i_2	64.757	38.931			0.62123	0.67271	17.862	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73409	0.76327	NaN	1	0	Median	0.52572	0.59289	NaN	1	0	Median	66010000	36418000	29592000	0	0	0	0	0	0	36342000	17026000	19316000	29668000	19392000	10276000	14970	2351	14197	90506;90507;90508	122243;122244;122245	122245			3	
FAPFNSVMTPPPVHYLQFK	1	Unmodified	2219.1238	0.12376731	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.49	100.42	3	1.1435E-09	81404	160511_QHF_FH_JSI9i_3	114.96	105.78			0.84869	0.84683	15.178	3	0	Plateau	1.2926	1.0316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99689	0.93617	NaN	1	0	Median	0.76609	0.76602	NaN	1	0	Median	201310000	103460000	97851000	48999000	22152000	26847000	0	0	0	74262000	40415000	33847000	78051000	40894000	37157000	14971	3001	14198	90509;90510;90511;90512	122246;122247;122248;122249;122250	122248			5	
FAPMLVPYIWQNQPFNLK	1	Unmodified	2205.1445	0.14450275	743	O95905	ECD	Protein SGT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	2	1		98.538	92.443	3	2.0611E-17	53112	160513_QHF_FH_JSI10Kac_6	140.1	126.68			0.9689	1.0086	24.073	4	2	Median	1.7115	1.4439	NaN	1	1	Median	0.80849	0.93132	18.714	2	1	Median	1.0098	0.95686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	335300000	156350000	178950000	59992000	20230000	39762000	143020000	75570000	67451000	132280000	60550000	71734000	0	0	0	14972	743	14199	90513;90514;90515;90516	122251;122252;122253;122254;122255;122256	122255			6	
FAPNQTR	0	Unmodified	832.41915	0.4191507	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	10.283	10.104	2	0.019269	7469	160511_QHF_FH_JSI12i_3	58.604	49.364			1.32	1.3183	10.188	3	0	Median	NaN	NaN	NaN	0	0	Median	1.32	1.5407	NaN	1	0	Median	1.4398	1.3183	NaN	1	0	Median	1.1444	1.2721	NaN	1	0	Median	183080000	80738000	102350000	0	0	0	18042000	7461400	10580000	91293000	35958000	55335000	73750000	37318000	36432000	14973	4719	14200	90517;90518;90519	122257	122257			1	
FAPPLVIK	1	Unmodified	883.55312	0.55312499	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	65.861	65.051	2	0.0019461	56019	160511_QHF_FH_JSI12i_2	83.801	72.432			0.96385	0.98785	9.7233	5	0	Median	1.1129	0.93951	NaN	1	0	Median	0.81522	1.0107	NaN	1	0	Median	1.102	1.0903	13.956	2	0	Median	0.89032	0.96899	NaN	1	0	Median	311230000	162710000	148520000	53653000	24954000	28699000	69584000	38489000	31096000	107360000	56387000	50976000	80627000	42881000	37746000	14974	808	14201	90520;90521;90522;90523;90524	122258;122259;122260;122261;122262;122263;122264;122265	122259			8	
FAPVVAPK	1	Unmodified	827.49052	0.49052473	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0.577	1	4	1							2	1	1	2	37.719	36.77	2	0.0033731	31362	160511_QHF_FH_JSI12i_2	73.039	51.268			0.90797	0.94051	10.962	4	0	Median	0.92804	0.79233	NaN	1	0	Median	0.7867	0.96816	NaN	1	0	Median	0.90317	0.91365	NaN	1	0	Median	0.91279	1.0221	NaN	1	0	Median	459410000	247710000	211700000	96129000	52412000	43718000	89375000	50446000	38929000	156040000	77591000	78450000	117860000	67258000	50607000	14975	3927	14202	90525;90526;90527;90528;90529;90530	122266;122267;122268;122269;122270;122271	122267			6	
FAPVVAPKPK	2	Acetyl (K)	1094.6488	0.64881629	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		59.484	48.47	2	0.006692	27727	160513_QHF_FH_JSI11Kac_4	73.26	41.971			10.672	9.9729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.672	9.9729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1263900	150420	1113400	0	0	0	0	0	0	1263900	150420	1113400	0	0	0	14976	3927	14203	90531	122272	122272	3006		1	
FAQALGLTEAVK	1	Unmodified	1246.6921	0.69213767	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.8	5	6	1					4		3	4	5	4	63.217	59.966	2	7.1176E-06	51523	160511_QHF_FH_JSI12i_2	123.79	38.117			2.3043	2.3791	179.77	15	14	Median	3.5311	3.0215	205.49	3	3	Median	3.3377	4.065	180.89	4	3	Median	2.3043	2.3692	204.52	5	5	Median	0.27	0.3044	176.7	3	3	Median	1126800000	584210000	542610000	219220000	111530000	107680000	196020000	64590000	131430000	398800000	214080000	184720000	312780000	194010000	118770000	14977	2087	14204	90532;90533;90534;90535;90536;90537;90538;90539;90540;90541;90542;90543;90544;90545;90546;90547	122273;122274;122275;122276;122277;122278;122279;122280;122281;122282;122283;122284;122285;122286;122287;122288	122276			16	
FAQDVSQDDLIR	0	Unmodified	1405.6838	0.68375782	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		49.957	49.542	2	0.00029741	44912	160511_QHF_FH_JSI11i_1	75.229	51.199			0.95454	0.94246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95454	0.94246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136270000	69129000	67145000	0	0	0	0	0	0	136270000	69129000	67145000	0	0	0	14978	4102	14205	90548;90549;90550	122289;122290;122291	122290			3	
FAQEQIAPLVSTMDENSK	1	Unmodified	2006.9619	0.96190652	1571	P45954	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.548	74.222	2	0.0054091	67510	160511_QHF_FH_JSI11i_1	49.298	34.096			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14979	1571	14206	90551	122292	122292			1	
FAQHGTFEYEYSQR	0	Unmodified	1761.7747	0.7746981	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.51		8	5						7	4	4	5	7	40.559	36.62	2;3	1.884E-56	20019	160513_QHF_FH_JSI10Kac_6	179.56	163.42			1.4063	1.3698	26.557	18	5	Median	1.6635	1.4352	14.803	4	1	Median	0.81906	0.98978	32.687	4	2	Median	1.5946	1.4978	15.229	5	1	Median	1.1855	1.1829	29.23	5	1	Median	3025700000	1288100000	1737600000	236580000	88570000	148010000	406610000	187320000	219290000	1216700000	447780000	768950000	1165800000	564440000	601320000	14980	1222	14207	90552;90553;90554;90555;90556;90557;90558;90559;90560;90561;90562;90563;90564;90565;90566;90567;90568;90569;90570;90571	122293;122294;122295;122296;122297;122298;122299;122300;122301;122302;122303;122304;122305;122306;122307;122308;122309;122310;122311;122312;122313;122314;122315;122316;122317;122318;122319;122320;122321;122322;122323;122324;122325	122324			33	
FAQIVQK	1	Unmodified	832.48069	0.48068833	5662	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		24.138	23.521	2	0.012239	19465	160511_QHF_FH_JSI11i_2	74.717	9.4543			0.707	0.78747	97.749	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2942	1.5719	NaN	1	1	Median	0.38622	0.3945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	335650000	243470000	92179000	0	0	0	57835000	30770000	27066000	277820000	212700000	65113000	0	0	0	14981	5662	14208	90572;90573	122326;122327	122326			2	
FAQKIGGSER	1	Acetyl (K)	1133.5829	0.58292157	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	31.537	22.203	2	1.3869E-05	13862	160513_QHF_FH_JSI12Kac_4	107.15	81.595			0.76368	0.82697	12.588	6	0	Median	NaN	NaN	NaN	0	0	Median	0.7816	0.92242	9.0607	2	0	Median	0.75026	0.744	11.823	2	0	Median	0.72774	0.79282	9.0924	2	0	Median	95418000	52993000	42425000	0	0	0	32405000	17061000	15344000	33913000	19262000	14651000	29100000	16670000	12430000	14982	1191	14209	90574;90575;90576;90577;90578;90579	122328;122329;122330;122331;122332;122333;122334;122335;122336	122332	1043		9	
FAQKYGGAEK	2	Acetyl (K)	1139.5611	0.56112349	2733	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	1	2	28.865	20.177	2	7.2563E-05	12155	160513_QHF_FH_JSI10Kac_4	102.07	68.517			0.95469	1.0315	116.67	4	1	Median	NaN	NaN	NaN	0	0	Median	2.6661	3.1412	148.89	2	1	Median	0.98474	0.97067	NaN	1	0	Median	0.62848	0.69036	NaN	1	0	Median	65616000	21014000	44603000	0	0	0	26161000	8210300	17950000	16959000	6997800	9961500	22497000	5805400	16691000	14983	2733	14210	90580;90581;90582;90583;90584	122337;122338;122339;122340;122341	122338	2653		5	
FAQLALER	0	Unmodified	946.52362	0.52361577	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	45.15	44.208	2	0.040839	37951	160511_QHF_FH_JSI11i_2	54.712	17.182			1.4381	1.5412	38.353	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9814	2.0213	NaN	1	1	Median	1.0437	1.1751	NaN	1	1	Median	112730000	54552000	58179000	0	0	0	0	0	0	62611000	28999000	33611000	50120000	25553000	24567000	14984	641	14211	90585;90586	122342;122343	122343			2	
FAQPGSFEYEYAMR	0	Unmodified	1694.7399	0.73989249	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.71	3	8	4						4	4	5	5	5	66.763	64.291	2;3	7.9917E-11	35215	160513_QHF_FH_JSI10Kac_6	124.12	118.15			1.2587	1.2316	15.453	19	1	Median	1.4811	1.2752	22.025	4	0	Median	1.0013	1.1883	14.026	5	1	Median	1.4218	1.3209	6.1025	5	0	Median	1.0508	1.1678	14.957	5	0	Median	7883500000	3500900000	4382600000	1398900000	498150000	900770000	1645600000	846860000	798780000	2602900000	1025900000	1576900000	2236100000	1130000000	1106100000	14985	2644	14212	90587;90588;90589;90590;90591;90592;90593;90594;90595;90596;90597;90598;90599;90600;90601;90602;90603;90604;90605	122344;122345;122346;122347;122348;122349;122350;122351;122352;122353;122354;122355;122356;122357;122358;122359;122360;122361;122362;122363;122364;122365;122366;122367;122368;122369;122370;122371;122372;122373;122374;122375;122376;122377;122378	122378			35	
FAQPGSFEYEYAMR	0	Oxidation (M)	1710.7348	0.73480712	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.041	55.092	2	0.00038289	47746	160511_QHF_FH_JSI11i_2	84.479	78.637			1.1613	1.2415	2.5884	4	0	Median	1.4526	1.2278	NaN	1	0	Median	1.0563	1.2603	NaN	1	0	Median	1.2504	1.2553	NaN	1	0	Median	1.0787	1.1912	NaN	1	0	Median	298920000	136150000	162770000	52724000	20922000	31803000	64395000	29171000	35223000	104860000	47839000	57017000	76943000	38217000	38726000	14986	2644	14212	90606;90607;90608;90609	122379;122380;122381;122382;122383;122384;122385	122383		2062	7	
FAQPGTFEFEYASR	0	Unmodified	1648.7522	0.75217174	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.91	67.013	2	1.2268E-09	57660	160511_QHF_FH_JSI12i_2	143.97	133.6			0.94663	0.96011	3.4642	4	0	Linear	1.145	0.99689	NaN	1	0	Median	0.87424	1.055	NaN	1	0	Median	0.96779	0.97299	NaN	1	0	Median	0.92594	0.99344	NaN	1	0	Median	307840000	159130000	148710000	56803000	23563000	33240000	52339000	32678000	19661000	116170000	62251000	53918000	82527000	40633000	41894000	14987	3809	14213	90610;90611;90612;90613	122386;122387;122388;122389;122390;122391;122392	122387			7	
FAQQHQAR	0	Unmodified	984.48896	0.4889616	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2.25	0.433		3	1								2	1	1	4.7546	4.3638	2;3	0.0048434	2264	160511_QHF_FH_JSI10i_3	65.803	46.326			0.56917	0.66893	28.733	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.52302	0.64984	NaN	1	0	Median	0.89651	0.90459	NaN	1	0	Median	1.0579	1.1518	NaN	1	0	Median	276870000	169690000	107180000	0	0	0	176750000	112140000	64614000	74887000	45492000	29395000	25234000	12060000	13173000	14988	1687	14214	90614;90615;90616;90617	122393;122394	122393			1	
FAQSTNLK	1	Unmodified	907.47633	0.47633123	1261	P25490	YY1	Transcriptional repressor protein YY1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								2		2	1	16.848	16.134	2	0.00080697	13055	160511_QHF_FH_JSI11i_2	91.626	60.958			1.5713	1.5246	45.773	4	3	Median	1.2864	1.0833	58.3	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1014	2.0869	NaN	1	1	Median	1.2646	1.4208	NaN	1	0	Median	322190000	149850000	172330000	134810000	62668000	72145000	0	0	0	100620000	50362000	50260000	86750000	36824000	49926000	14989	1261	14215	90618;90619;90620;90621;90622	122395;122396;122397;122398;122399;122400	122400			6	
FAQTMEFVEEYLR	0	Unmodified	1661.7759	0.77594365	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.099	97.882	2	0.00070053	85883	160511_QHF_FH_JSI11i_2	94.801	71.884			0.6527	0.63612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6527	0.63612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7010900	5534100	1476900	0	0	0	0	0	0	7010900	5534100	1476900	0	0	0	14990	2549	14216	90623	122401	122401			1	
FAQVVLQDLDKK	2	Unmodified	1402.782	0.78201531	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	59.713	58.38	3	0.00013995	50106	160511_QHF_FH_JSI12i_2	81.494	69.88			0.049876	0.054674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.049876	0.054674	NaN	1	1	Median	22483000	21118000	1365400	0	0	0	0	0	0	0	0	0	22483000	21118000	1365400	14991	2291	14217	90624	122402	122402			1	
FAREEIIPVAAEYDK	1	Unmodified	1749.8938	0.8937506	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	61.057	60.535	2;3	0.0001365	52040	160511_QHF_FH_JSI12i_3	79.022	72.585			0.99791	1.0564	14.653	9	1	Median	1.45	1.2288	21.38	2	1	Median	0.877	1.0716	11.023	2	0	Median	1.0001	1.0675	8.4932	3	0	Plateau	0.88498	0.9101	8.5251	2	0	Median	2545900000	1292300000	1253700000	346700000	164650000	182050000	564990000	330640000	234350000	1149800000	536810000	613040000	484410000	260160000	224250000	14992	997	14218	90625;90626;90627;90628;90629;90630;90631;90632;90633	122403;122404;122405;122406;122407;122408;122409;122410;122411;122412;122413;122414;122415	122412			13	
FASEAEDK	1	Unmodified	895.39233	0.39232683	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			13	0						1					1			11.585	4.1785	2	0.0090523	4555	160513_QHF_FH_JSI10Kac_3	77.282	52.36			2.2163	2.5967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2163	2.5967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5333100	2146300	3186800	0	0	0	5333100	2146300	3186800	0	0	0	0	0	0	14993	5215	14219	90634	122416	122416			1	
FASEIAGVDDLGTTGR	0	Unmodified	1607.7791	0.77911477	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	3	2	61.879	61.094	2	1.0335E-80	55680	160511_QHF_FH_JSI12i_1	246.51	230.25			0.98539	1.0379	15.528	9	4	Median	1.2685	1.0632	23.273	2	0	Median	0.8274	0.95947	20.861	3	2	Plateau	1.0044	1.0091	4.8135	2	1	Median	0.89516	0.96115	10.866	2	1	Median	865770000	421900000	443870000	171710000	70340000	101370000	241220000	125620000	115600000	227030000	101770000	125250000	225810000	124170000	101640000	14994	1306	14220	90635;90636;90637;90638;90639;90640;90641;90642;90643;90644	122417;122418;122419;122420;122421;122422;122423;122424;122425	122419			9	
FASENDLPEWK	1	Unmodified	1334.6143	0.61428128	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.05	4	5	3				2	4		4	5	5	4	61.663	57.327	2	7.0616E-13	51942	160511_QHF_FH_JSI11i_1	143.4	134.88			1.025	1.0459	11.769	17	1	Median	1.2206	1.0149	8.0556	4	0	Median	0.94947	1.1204	9.8509	5	0	Median	1.116	1.0739	12.16	4	1	Median	1.0638	1.1487	16.616	4	0	Median	8149500000	4038600000	4110900000	1583600000	739690000	843870000	1899800000	987650000	912110000	2495600000	1188200000	1307400000	2170500000	1123100000	1047500000	14995	1565	14221	90645;90646;90647;90648;90649;90650;90651;90652;90653;90654;90655;90656;90657;90658;90659;90660;90661;90662	122426;122427;122428;122429;122430;122431;122432;122433;122434;122435;122436;122437;122438;122439;122440;122441;122442;122443;122444;122445;122446;122447;122448;122449;122450;122451;122452;122453;122454;122455;122456;122457;122458;122459;122460;122461;122462;122463;122464;122465;122466;122467;122468;122469	122428			44	
FASFIDK	1	Unmodified	826.4225	0.42250475	51;71;53;83;79;57;45;54;78;63;52;80;82;60	CON__P05787;P05787;CON__Q9H552;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q3SY84;Q7RTS7;Q86Y46;CON__P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3KNV1;P08729;CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7;CON__P19013;P19013;CON__Q6NXH9;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT71;KRT74;KRT73;KRT72;KRT7;KRT75;KRT3;KRT76;KRT5;KRT79;KRT84;KRT4;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.97	4	10	5					4	3	8	6	7	5	47.592	44.231	1;2	0.0027156	24328	160513_QHF_FH_JSI11Kac_5	94.662	44.543		+	0.48161	0.48342	110.03	26	26	Median	0.46821	0.3862	112.53	8	8	Median	0.38014	0.45175	90.815	6	6	Median	2.8575	2.7005	121.59	7	7	Median	0.3386	0.36395	119.23	5	5	Median	32000000000	14609000000	17391000000	6369700000	2860800000	3508900000	7284200000	3872500000	3411700000	10242000000	4143500000	6098400000	8104100000	3731800000	4372300000	14996	51;53;71;45;52;54;57;78;79;80;83;60;82;63	14222	90663;90664;90665;90666;90667;90668;90669;90670;90671;90672;90673;90674;90675;90676;90677;90678;90679;90680;90681;90682;90683;90684;90685;90686;90687;90688	122470;122471;122472;122473;122474;122475;122476;122477;122478;122479;122480;122481;122482;122483;122484;122485;122486;122487;122488;122489;122490;122491;122492;122493;122494;122495;122496;122497;122498;122499	122490			30	
FASFIDKVR	1	Unmodified	1081.592	0.59202969	51;71;53;83;79;57;45;54;78;63;52;80;82	CON__P05787;P05787;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q3SY84;Q7RTS7;Q86Y46;CON__P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3KNV1;P08729;CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7;CON__Q6NXH9;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT71;KRT74;KRT73;KRT72;KRT7;KRT75;KRT3;KRT76;KRT5;KRT79;KRT84;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		48.673	47.889	3	0.02919	42182	160511_QHF_FH_JSI11i_3	36.585	9.2561		+	0.14881	0.17617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14881	0.17617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30061000	28071000	1990300	0	0	0	19233000	17243000	1990300	10828000	10828000	0	0	0	0	14997	51;53;71;45;52;54;57;78;79;80;83;82;63	14223	90689;90690	122500;122501	122500			2	
FASFIDKVR	1	Acetyl (K)	1123.6026	0.60259438	51;71;53;83;79;57;45;54;78;63;52;80;82	CON__P05787;P05787;CON__Q3SY84;CON__Q7RTS7;CON__Q32MB2;Q3SY84;Q7RTS7;Q86Y46;CON__P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3KNV1;P08729;CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7;CON__Q6NXH9;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT71;KRT74;KRT73;KRT72;KRT7;KRT75;KRT3;KRT76;KRT5;KRT79;KRT84;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 epidermal	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.49								3	2	1	1	2	1	75.594	65.509	2	7.0417E-05	34364	160513_QHF_FH_JSI12Kac_6	122.13	60.173		+	0.56143	0.56418	37.266	5	0	Median	0.66502	0.56418	NaN	1	0	Median	0.91954	1.0974	NaN	1	0	Median	0.45947	0.44724	12.281	2	0	Median	0.56143	0.59234	NaN	1	0	Median	604680000	432310000	172370000	6946000	4142600	2803400	17742000	10172000	7570500	474950000	350670000	124290000	105040000	67331000	37711000	14998	51;53;71;45;52;54;57;78;79;80;83;82;63	14223	90691;90692;90693;90694;90695	122502;122503;122504;122505;122506;122507;122508;122509	122509	14;55		8	
FASFNAYENHLK	1	Unmodified	1439.6834	0.68336389	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								2	2	3	47.755	47.201	2;3	3.466E-10	40348	160511_QHF_FH_JSI12i_3	126.71	108.84			1.0197	1.0499	12.382	5	1	Median	NaN	NaN	NaN	0	0	Median	0.86383	1.0444	9.717	2	0	Median	1.2162	1.1374	20.853	2	1	Median	1.0197	1.0499	NaN	1	0	Median	772970000	333380000	439590000	0	0	0	195120000	90616000	104510000	392340000	180320000	212030000	185510000	62451000	123060000	14999	3947	14224	90696;90697;90698;90699;90700;90701;90702	122510;122511;122512;122513;122514;122515;122516;122517	122516			7	
FASFPDYLVIQIK	1	Unmodified	1539.8337	0.83371653	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		2							6	1	1	2	4	94.458	87.895	2;3	9.3137E-27	44808	160513_QHF_FH_JSI12Kac_6	195.27	78.75			0.76643	0.73872	21.45	8	5	Median	0.72684	0.61287	NaN	1	1	Median	0.59835	0.7144	NaN	1	1	Median	0.73205	0.71809	8.7398	2	1	Median	0.87696	0.96859	20.623	4	2	Median	1857600000	1098300000	759300000	215680000	123920000	91763000	419870000	280930000	138940000	455480000	254310000	201180000	766610000	439180000	327420000	15000	1573	14225	90703;90704;90705;90706;90707;90708;90709;90710	122518;122519;122520;122521;122522;122523;122524;122525	122522			6	
FASHCLMNHPDLAK	1	Unmodified	1639.7599	0.75991643	2789;4988	Q9NTI5;Q29RF7	PDS5B;PDS5A	Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	35.355	35.27	3;4	0.011891	30967	160511_QHF_FH_JSI11i_3	36.77	32.668			0.88541	0.92009	7.6923	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1158	1.0362	NaN	1	0	Median	0.88302	0.90855	1.7849	2	0	Median	233520000	117870000	115650000	0	0	0	0	0	0	85820000	34399000	51421000	147700000	83467000	64233000	15001	4988;2789	14226	90711;90712;90713	122526;122527;122528	122526			2	
FASLEFSPGSK	1	Unmodified	1168.5764	0.57643921	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	58.085	55.191	2	1.7506E-06	48454	160511_QHF_FH_JSI9i_2	118.71	101.33			1.2443	1.1491	35.19	5	3	Median	1.2324	1.0431	13.692	2	2	Median	0.90153	1.1288	NaN	1	1	Median	1.2443	1.2804	NaN	1	0	Median	2.1401	2.3677	NaN	1	0	Median	509690000	245910000	263780000	113860000	48313000	65543000	107230000	53792000	53441000	186490000	98688000	87799000	102120000	45119000	56999000	15002	3562	14227	90714;90715;90716;90717;90718	122529;122530;122531;122532;122533;122534;122535;122536	122534			8	
FASSPLR	0	Unmodified	776.41809	0.41808807	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.18	1	5	2					2		1	4	3	2	31.04	28.369	2	0.0099713	18348	160511_QHF_FH_JSI11i_2	76.847	35.994			0.87039	0.95586	15.254	10	0	Median	1.1374	0.96838	NaN	1	0	Median	0.82383	0.99321	14.254	4	0	Median	0.89636	0.88432	13.853	3	0	Median	0.85443	0.94434	18.69	2	0	Median	3224900000	1601400000	1623500000	203890000	107210000	96683000	2256200000	1053900000	1202300000	562240000	323250000	238990000	202570000	117030000	85539000	15003	636	14228	90719;90720;90721;90722;90723;90724;90725;90726;90727;90728	122537;122538;122539;122540;122541;122542;122543;122544;122545;122546	122543			10	
FASTMVHALNTILLTSTELFQLR	0	Unmodified	2605.3938	0.39379416	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.21	94.491	3	2.084E-74	55630	160513_QHF_FH_JSI10Kac_6	210.74	184.93			0.48528	0.57675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48528	0.57675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215150000	120870000	94281000	0	0	0	215150000	120870000	94281000	0	0	0	0	0	0	15004	2280	14229	90729;90730	122547;122548;122549	122549			3	
FASTVFPSDHIPSR	0	Unmodified	1559.7732	0.77324153	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	1	3	3	54.445	52.958	2;3	8.8903E-15	45455	160511_QHF_FH_JSI12i_3	161.94	134.61			1.0318	1.0098	31.942	9	1	Median	1.1137	0.94763	10.674	2	1	Median	0.92163	1.1466	NaN	1	0	Median	1.0966	1.0098	53.699	3	0	Median	0.94374	0.98332	19.252	3	0	Median	1532100000	807280000	724850000	150380000	70510000	79871000	214550000	130930000	83626000	528580000	276140000	252440000	638610000	329710000	308910000	15005	2997	14230	90731;90732;90733;90734;90735;90736;90737;90738;90739	122550;122551;122552;122553;122554;122555;122556;122557;122558;122559;122560	122560			10	
FASVLPEYLK	1	Unmodified	1165.6383	0.63831118	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.252	73.307	2	0.00016174	63282	160511_QHF_FH_JSI12i_2	95.358	79.977			0.45531	0.48601	21.043	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42155	0.41881	NaN	1	1	Median	0.49176	0.56398	NaN	1	1	Median	135210000	101010000	34199000	0	0	0	0	0	0	87779000	65782000	21997000	47432000	35230000	12202000	15006	3375	14231	90740;90741	122561;122562	122561			2	
FASWALESDNNTALLLSK	1	Unmodified	1979	6.5851004E-06	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.582	2	11	4							2	5	4	6	92.531	92.08	2;3	2.1376E-31	81478	160511_QHF_FH_JSI10i_2	194.48	173.17			0.93117	0.9282	33.263	10	6	Median	1.1907	1.0027	NaN	1	0	Median	0.69876	0.85988	28.306	3	2	Median	0.95422	0.96549	30.687	3	1	Median	0.54161	0.60313	39.116	3	3	Median	724440000	370310000	354140000	93199000	42109000	51090000	151210000	85827000	65384000	245420000	121480000	123940000	234610000	120890000	113720000	15007	2380	14232	90742;90743;90744;90745;90746;90747;90748;90749;90750;90751;90752;90753;90754;90755;90756;90757;90758	122563;122564;122565;122566;122567;122568;122569;122570;122571;122572;122573;122574;122575;122576;122577;122578;122579;122580;122581;122582;122583;122584;122585;122586;122587;122588;122589;122590;122591;122592;122593	122586			31	
FASYLTFSPSEVK	1	Unmodified	1474.7344	0.73439641	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.64		5	3					3	5	4	6	3	3	77.077	71.558	2	4.4569E-63	37399	160513_QHF_FH_JSI9Kac_6	227.94	196.52			1.0166	0.98661	28.531	14	4	Median	1.0412	0.87603	12.358	4	0	Median	0.76252	0.92959	45.836	5	3	Median	1.0714	1.0761	13.519	3	1	Plateau	0.91347	0.98953	10.709	2	0	Median	1307100000	646470000	660630000	306400000	129950000	176450000	301640000	176240000	125390000	419060000	200490000	218570000	280010000	139790000	140220000	15008	1837	14233	90759;90760;90761;90762;90763;90764;90765;90766;90767;90768;90769;90770;90771;90772;90773;90774	122594;122595;122596;122597;122598;122599;122600;122601;122602;122603;122604;122605;122606;122607;122608;122609;122610;122611;122612;122613;122614;122615	122610			22	
FATASADGQIYIYDGK	1	Unmodified	1718.8152	0.81516593	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	62.233	61.691	2	7.703E-07	56212	160511_QHF_FH_JSI12i_1	123.28	115.66			0.56658	0.56153	15.608	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65209	0.62705	NaN	1	0	Median	0.49228	0.50285	NaN	1	1	Median	67951000	47373000	20578000	0	0	0	0	0	0	36289000	22919000	13370000	31662000	24453000	7208400	15009	472	14234	90775;90776;90777	122616;122617;122618;122619	122618			4	
FATEAAITILR	0	Unmodified	1204.6816	0.68157298	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	3	2	3	74.206	70.538	2	1.9543E-14	37333	160513_QHF_FH_JSI11Kac_6	147.75	103.4			1.018	1.0403	20.998	11	0	Median	1.176	0.93533	27.219	3	0	Median	0.85697	1.2085	18.281	3	0	Plateau	1.0537	1.0449	0.25082	2	0	Median	0.88188	0.96488	21.185	3	0	Median	2833000000	1441600000	1391300000	760710000	418660000	342050000	852710000	452570000	400140000	649520000	313610000	335910000	570030000	256800000	313230000	15010	1132	14235	90778;90779;90780;90781;90782;90783;90784;90785;90786;90787;90788	122620;122621;122622;122623;122624;122625;122626;122627;122628;122629;122630;122631;122632;122633;122634;122635	122624			15	
FATEYCNTIEGTAK	1	Unmodified	1603.7188	0.7188227	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	45.685	45.191	2	0.00016714	40688	160511_QHF_FH_JSI11i_1	94.767	85.335			1.111	1.3182	26.366	3	0	Median	NaN	NaN	NaN	0	0	Median	1.111	1.3182	NaN	1	0	Median	0.98884	0.96078	NaN	1	0	Median	1.5403	1.6218	NaN	1	0	Median	140450000	67283000	73162000	0	0	0	37439000	21459000	15980000	40709000	20731000	19978000	62297000	25093000	37204000	15011	133	14236	90789;90790;90791;90792	122636;122637;122638;122639;122640	122637			5	
FATFVFNVFDENK	1	Unmodified	1576.7562	0.75619449	1982	P62166	NCS1	Neuronal calcium sensor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1		2	1	1	83.643	81.598	2;3	1.1367E-13	48586	160513_QHF_FH_JSI10Kac_6	172.17	143.22			0.87381	0.96003	57.523	4	1	Median	NaN	NaN	NaN	0	0	Median	0.5529	0.67052	80.294	2	1	Median	0.7921	0.77909	NaN	1	0	Median	1.2759	1.3725	NaN	1	0	Median	150570000	82310000	68257000	0	0	0	62800000	38695000	24106000	55739000	30577000	25163000	32027000	13038000	18989000	15012	1982	14237	90793;90794;90795;90796	122641;122642;122643;122644;122645	122645			5	
FATHAAALSVR	0	Unmodified	1142.6196	0.61964142	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		6	8						8	5	6	6	5	33.274	29.489	2;3	3.5154E-11	16614	160513_QHF_FH_JSI10Kac_6	139.43	120.7			1.1682	1.1898	34.266	22	2	Median	1.4461	1.2105	10.689	5	1	Median	0.99043	1.1525	25.884	6	1	Median	1.3571	1.3063	31.903	6	0	Median	0.61026	0.62508	37.318	5	0	Median	6452300000	3171100000	3281200000	2051200000	808570000	1242600000	1955000000	998250000	956750000	1278200000	624650000	653530000	1168000000	739630000	428380000	15013	1222	14238	90797;90798;90799;90800;90801;90802;90803;90804;90805;90806;90807;90808;90809;90810;90811;90812;90813;90814;90815;90816;90817;90818	122646;122647;122648;122649;122650;122651;122652;122653;122654;122655;122656;122657;122658;122659;122660;122661;122662;122663;122664;122665;122666;122667;122668;122669;122670;122671;122672;122673;122674;122675	122675			29	
FATHGAALTVK	1	Unmodified	1114.6135	0.61349341	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	27.87	27.464	2;3	1.4161E-05	22929	160511_QHF_FH_JSI12i_3	106.4	85.775			1.3395	1.2466	22.203	7	3	Median	1.5351	1.2466	NaN	1	0	Median	1.5441	1.7912	NaN	1	0	Median	1.0774	1.0005	10.102	2	1	Median	1.3395	1.3917	15.263	3	2	Median	1383900000	673270000	710670000	90888000	33675000	57214000	123600000	56194000	67408000	459550000	236180000	223370000	709900000	347230000	362680000	15014	3809	14239	90819;90820;90821;90822;90823;90824;90825	122676;122677;122678;122679;122680;122681;122682;122683;122684;122685	122685			10	
FATLAELVQYYMEHHGQLK	1	Oxidation (M)	2293.1201	0.1201385	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	87.628	79.574	3;4	1.4979E-14	44101	160513_QHF_FH_JSI11Kac_6	132.79	119.06			1.0567	0.95851	34.602	9	4	Median	1.0567	0.92378	40.629	3	2	Median	0.90968	1.0632	70.514	2	2	Median	0.98777	0.94852	1.4816	2	0	Median	1.1555	1.2158	1.389	2	0	Median	2216300000	1109800000	1106500000	446070000	224420000	221660000	440150000	262830000	177320000	425480000	212260000	213220000	904560000	410270000	494290000	15015	2239	14240	90826;90827;90828;90829;90830;90831;90832;90833;90834;90835	122686;122687;122688;122689;122690;122691;122692;122693;122694;122695;122696;122697	122687		1852	12	
FATLAELVQYYMEHHGQLK	1	Unmodified	2277.1252	0.12522387	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.33			3						11	3	3	4	4	95.73	89.104	3;4	4.6565E-71	47975	160513_QHF_FH_JSI11Kac_6	208.34	194.51			0.9426	1.001	83.315	13	4	Median	1.1487	1.001	13.036	3	0	Median	0.72346	0.85602	18.334	3	0	Median	1.2849	1.2248	128.86	4	1	Median	0.26579	0.28177	111.74	3	3	Median	14606000000	8049000000	6557400000	3282100000	1878800000	1403300000	3602300000	1834100000	1768300000	4164800000	2159100000	2005700000	3557200000	2177200000	1380000000	15016	2239	14240	90836;90837;90838;90839;90840;90841;90842;90843;90844;90845;90846;90847;90848;90849	122698;122699;122700;122701;122702;122703;122704;122705;122706;122707;122708;122709;122710;122711;122712;122713;122714;122715	122700			18	
FATNEAIQR	0	Unmodified	1048.5302	0.53015772	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.389	24.036	2	0.00085366	20072	160511_QHF_FH_JSI11i_2	72.879	44.773			1.0058	1.0101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0058	1.0101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99293000	52615000	46679000	0	0	0	0	0	0	99293000	52615000	46679000	0	0	0	15017	235	14241	90850	122716;122717	122716			2	
FATVEVTDKPVDEALR	1	Unmodified	1788.9258	0.92577901	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.276	1	11								3	3	4	2	59.677	58.846	2;3	3.9846E-21	52067	160511_QHF_FH_JSI10i_2	140.31	118.68			0.90026	0.98523	29.623	10	4	Median	1.0847	0.93055	14.422	2	1	Median	0.72041	0.89615	25.861	2	1	Median	0.9518	0.95398	46.892	4	2	Median	0.88982	0.99265	7.4087	2	0	Median	701740000	340410000	361330000	107300000	47907000	59396000	147140000	77148000	69994000	287930000	139420000	148500000	159370000	75935000	83436000	15018	4965	14242	90851;90852;90853;90854;90855;90856;90857;90858;90859;90860;90861;90862	122718;122719;122720;122721;122722;122723;122724;122725;122726;122727;122728;122729;122730;122731	122731			14	
FATVEVTDKPVDEALREAMPK	2	Unmodified	2345.1937	0.19369737	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	2		By matching	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	77.336	77.083	3;4	1.3183E-07	66855	160511_QHF_FH_JSI12i_3	87.49	79.778			1.2354	1.1607	12.198	5	2	Median	NaN	NaN	NaN	0	0	Median	0.90734	1.1142	NaN	1	0	Median	1.3822	1.3036	16.419	2	2	Median	1.1746	1.219	12.598	2	0	Median	292130000	133800000	158320000	0	0	0	27376000	14813000	12562000	110440000	44851000	65591000	154310000	74139000	80171000	15019	4965	14243	90863;90864;90865;90866;90867	122732;122733;122734;122735;122736;122737	122735			6	
FAVALDSEQNNIHVK	1	Unmodified	1683.858	0.8580338	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		4								1		2	1	56.013	54.82	2;3	4.49E-12	47476	160511_QHF_FH_JSI11i_2	113.63	94.884			0.79184	0.7654	16.726	2	0	Median	0.8176	0.68003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76689	0.8615	NaN	1	0	Median	164000000	78132000	85872000	68644000	29349000	39294000	0	0	0	0	0	0	95360000	48783000	46578000	15020	116	14244	90868;90869;90870;90871	122738;122739;122740	122739			2	
FAVALLDDSVR	0	Unmodified	1204.6452	0.64518747	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.37		6						4		2	3	3	2	79.053	74.4	2	9.0133E-05	67327	160511_QHF_FH_JSI11i_2	113.22	72.232			0.8167	0.85924	45.067	10	6	Median	1.0449	0.8867	25.707	2	1	Median	0.26901	0.33034	79.492	3	2	Plateau	0.96462	0.95954	25.706	3	2	Median	0.60868	0.66265	36.062	2	1	Median	486300000	299450000	186860000	80908000	48702000	32206000	164490000	123030000	41460000	157470000	79861000	77607000	83440000	47856000	35584000	15021	4956	14245	90872;90873;90874;90875;90876;90877;90878;90879;90880;90881	122741;122742;122743;122744;122745;122746;122747;122748;122749;122750;122751;122752	122744			12	
FAVATLPPA	0	Unmodified	885.496	0.49600404	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	8				4	2				2	4	4	4	72.998	70.323	1;2	0.00019607	64051	160511_QHF_FH_JSI11i_1	85.306	76.966			0.91264	0.92396	11.382	11	2	Median	1.189	0.98039	8.3841	2	0	Median	0.79389	0.94316	21.147	3	1	Median	0.95105	0.91996	4.454	3	0	Median	0.91264	0.92539	4.8218	3	1	Plateau	843440000	434840000	408590000	186660000	85116000	101550000	215910000	118460000	97457000	226970000	118430000	108540000	213890000	112840000	101060000	15022	1302	14246	90882;90883;90884;90885;90886;90887;90888;90889;90890;90891;90892;90893;90894;90895	122753;122754;122755;122756;122757;122758;122759;122760;122761;122762;122763;122764;122765;122766;122767;122768;122769;122770;122771;122772;122773;122774;122775;122776;122777;122778;122779;122780;122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791;122792;122793;122794	122755			38	
FAVAWYSLR	0	Unmodified	1111.5815	0.581465	469	O75054	IGSF3	Immunoglobulin superfamily member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	81.009	72.751	2	0.00019278	40759	160513_QHF_FH_JSI10Kac_6	93.429	80.392			1.0016	0.9972	6.2913	4	1	Median	1.1806	0.99091	NaN	1	0	Median	0.93945	1.1143	NaN	1	1	Median	1.0678	1.0035	NaN	1	0	Median	0.90516	0.96582	NaN	1	0	Median	769880000	390580000	379300000	188540000	80461000	108070000	336100000	178620000	157480000	147430000	71576000	75857000	97815000	59921000	37894000	15023	469	14247	90896;90897;90898;90899;90900	122795;122796;122797;122798;122799;122800;122801;122802	122801			8	
FAVEEIIQK	1	Unmodified	1075.5914	0.59136099	4391	Q9BS40	LXN	Latexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								5		1	1	2	1	75.52	64.956	2	0.0018764	34589	160513_QHF_FH_JSI11Kac_5	69.598	46.817			1.0752	1.2139	15.527	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.88507	1.0619	NaN	1	0	Median	1.0752	1.059	NaN	1	1	Median	1.2606	1.3877	NaN	1	0	Median	24509000	12030000	12479000	0	0	0	7637100	3976700	3660400	5948100	2409500	3538600	10924000	5643600	5280000	15024	4391	14248	90901;90902;90903;90904;90905	122803;122804;122805;122806;122807;122808;122809	122805			7	
FAVFGLGNK	1	Unmodified	951.5178	0.51780212	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	5	4	4	72.126	66.893	2	1.7448E-08	59855	160511_QHF_FH_JSI11i_3	151.51	132.03			0.94463	0.99185	14.564	16	0	Median	1.2454	1.0683	14.483	4	0	Median	0.90815	1.0756	8.5291	5	0	Median	0.96643	0.93702	10.916	4	0	Median	0.75206	0.95615	10.265	3	0	Plateau	8595400000	4252800000	4342600000	1427200000	616470000	810780000	1388900000	658190000	730720000	2639000000	1316000000	1323000000	3140200000	1662100000	1478100000	15025	1100	14249	90906;90907;90908;90909;90910;90911;90912;90913;90914;90915;90916;90917;90918;90919;90920;90921;90922	122810;122811;122812;122813;122814;122815;122816;122817;122818;122819;122820;122821;122822;122823;122824;122825;122826;122827;122828;122829;122830;122831;122832;122833;122834;122835;122836;122837;122838;122839;122840;122841;122842;122843;122844;122845;122846;122847;122848	122810			39	
FAVGIVIGR	0	Unmodified	930.56509	0.56508666	3966;4118	Q96AE4;Q96I24	FUBP1;FUBP3	Far upstream element-binding protein 1;Far upstream element-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	75.351	66.881	2	0.00029463	36908	160513_QHF_FH_JSI10Kac_6	100.74	66.945			1.1196	0.98366	8.816	4	0	Linear	1.2306	1.0611	NaN	1	0	Median	0.86613	1.0293	NaN	1	0	Median	1.3131	1.2569	NaN	1	0	Median	1.0187	1.0957	NaN	1	0	Median	2041700000	1022300000	1019400000	235250000	66233000	169010000	1609800000	877040000	732810000	47237000	15189000	32048000	149370000	63807000	85568000	15026	3966;4118	14250	90923;90924;90925;90926	122849;122850;122851	122850			3	
FAVGSGSR	0	Unmodified	779.3926	0.3926016	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	15.053	14.763	2	0.0031875	11619	160511_QHF_FH_JSI12i_3	74.439	23.402			0.87673	0.86764	31.912	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2373	1.3862	NaN	1	0	Median	0.79668	0.75348	NaN	1	0	Median	0.87673	0.86764	NaN	1	0	Median	513570000	282830000	230740000	0	0	0	133310000	57363000	75949000	163950000	99279000	64674000	216310000	126190000	90118000	15027	255	14251	90927;90928;90929	122852;122853;122854;122855	122855			4	
FAVLHGEAPR	0	Unmodified	1095.5825	0.58252764	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	6.02		9	5						5	6	5	4	4	32.53	29.995	2;3	2.6397E-06	25530	160511_QHF_FH_JSI11i_3	103.01	70.373			1.0085	1.0149	49.032	16	4	Median	1.5968	1.3457	61.274	4	2	Median	1.1611	1.3787	54.352	4	1	Median	0.93886	0.922	54.577	4	1	Median	0.9598	1.0149	19.514	4	0	Median	4860700000	2325900000	2534800000	598770000	278740000	320030000	958320000	510350000	447980000	1827300000	858620000	968720000	1476200000	678190000	798050000	15028	1867	14252	90930;90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948	122856;122857;122858;122859;122860;122861;122862;122863;122864;122865;122866;122867;122868;122869;122870;122871;122872;122873;122874;122875;122876;122877;122878;122879;122880	122857			25	
FAVLQTYGDTTHTLVEK	1	Unmodified	1921.9785	0.97854286	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.49	1	11	9					4	9	9	7	13	5	69.71	65.919	2;3	2.5403E-83	34549	160513_QHF_FH_JSI9Kac_6	254.77	213.49			1.0333	1.0054	39.297	31	14	Median	1.1943	1.0238	47.01	8	4	Median	0.83364	0.99629	39.749	7	3	Median	1.0689	1.0511	44.141	11	7	Median	0.84332	0.9007	16.061	5	0	Median	11224000000	5982900000	5241500000	1548000000	673070000	874950000	2277100000	1283000000	994110000	4514900000	2447400000	2067500000	2884400000	1579400000	1305000000	15029	1395	14253	90949;90950;90951;90952;90953;90954;90955;90956;90957;90958;90959;90960;90961;90962;90963;90964;90965;90966;90967;90968;90969;90970;90971;90972;90973;90974;90975;90976;90977;90978;90979;90980;90981;90982	122881;122882;122883;122884;122885;122886;122887;122888;122889;122890;122891;122892;122893;122894;122895;122896;122897;122898;122899;122900;122901;122902;122903;122904;122905;122906;122907;122908;122909;122910;122911;122912;122913;122914;122915;122916;122917;122918;122919;122920;122921;122922;122923;122924;122925;122926;122927;122928;122929;122930;122931;122932;122933;122934;122935;122936;122937;122938;122939	122928			59	
FAVPESDHLTYLNVYLQWK	1	Unmodified	2322.1685	0.1684689	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				90.528	81.813	3	1.3398E-35	45671	160513_QHF_FH_JSI9Kac_6	174.78	151.61			1.0744	0.92481	NaN	1	0	Median	1.0744	0.92481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52717000	24899000	27818000	52717000	24899000	27818000	0	0	0	0	0	0	0	0	0	15030	3861	14254	90983	122940	122940			1	
FAVPTYAAK	1	Unmodified	966.51747	0.51746776	2416	Q13443	ADAM9	Disintegrin and metalloproteinase domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.49	47.506	2	0.00068313	41909	160511_QHF_FH_JSI10i_2	86.833	59.871			6.855	6.3958	29.439	4	4	Median	6.8743	5.8428	NaN	1	1	Median	4.0141	4.86	NaN	1	1	Median	6.8358	7.0012	NaN	1	1	Median	8.7746	9.6975	NaN	1	1	Median	1036200000	70404000	965820000	249100000	17572000	231530000	120940000	14299000	106650000	280630000	21627000	259000000	385560000	16906000	368650000	15031	2416	14255	90984;90985;90986;90987	122941;122942;122943;122944	122944			4	
FAVSAESLPETLVIFVADMSRPWTVMESLQK	1	Unmodified	3480.7673	0.7672998	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.33	97.613	3	4.3316E-142	57797	160513_QHF_FH_JSI10Kac_6	254.85	224.99			0.73434	0.88317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73434	0.88317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146260000	64503000	81756000	0	0	0	146260000	64503000	81756000	0	0	0	0	0	0	15032	312	14256	90988	122945;122946	122946			2	
FAVSDGLELRPK	1	Unmodified	1330.7245	0.72450043	4671	Q9H2D1	SLC25A32	Mitochondrial folate transporter/carrier	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	57.182	57.055	2;3	0.00012183	49168	160511_QHF_FH_JSI12i_3	62.891	58.718			1.2158	1.2013	0.62472	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2718	1.196	NaN	1	0	Median	1.1622	1.2066	NaN	1	0	Median	191290000	57547000	133740000	0	0	0	0	0	0	74681000	22618000	52063000	116610000	34929000	81682000	15033	4671	14257	90989;90990;90991	122947;122948	122947			2	
FAVSIGYWHDPYIQHFVR	0	Unmodified	2234.1061	0.10614341	5328	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			83.038	75.933	4	4.1489E-06	42673	160513_QHF_FH_JSI10Kac_6	93.342	86.906			0.99943	1.0153	6.4521	2	0	Median	1.1107	0.97004	NaN	1	0	Median	0.89933	1.0627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	305320000	158350000	146970000	81568000	36808000	44760000	223750000	121540000	102210000	0	0	0	0	0	0	15034	5328	14258	90992;90993	122949;122950	122950			2	
FAVSQMSALLDSAHLLASSTQR	0	Unmodified	2332.1845	0.18452967	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			101.41	101.24	3	1.4131E-10	83886	160511_QHF_FH_JSI10i_3	116.24	103.94			0.8904	0.8634	3.186	2	1	Median	1.0135	0.84416	NaN	1	0	Median	0.78222	0.88307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203660000	122920000	80744000	73536000	37190000	36345000	130130000	85728000	44399000	0	0	0	0	0	0	15035	179	14259	90994;90995	122951;122952	122951			2	
FAVYLPPK	1	Unmodified	933.53239	0.53238955	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	61.482	60.49	2	0.0021731	52529	160511_QHF_FH_JSI11i_2	79.939	51.427			0.48045	0.53846	19.684	5	2	Median	0.53919	0.47562	NaN	1	0	Median	0.47608	0.5898	NaN	1	0	Median	0.42287	0.41802	NaN	1	1	Median	0.55118	0.61305	18.348	2	1	Median	511730000	380050000	131680000	101080000	78680000	22397000	101910000	79684000	22228000	145480000	107820000	37662000	163260000	113870000	49389000	15036	979	14260	90996;90997;90998;90999;91000;91001;91002	122953;122954;122955;122956;122957;122958	122956			6	
FAYGYIEDLK	1	Unmodified	1217.5968	0.5968403	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.47		7	1					3	2	3	5	3	2	71.886	67.804	2	2.2811E-07	59848	160511_QHF_FH_JSI11i_2	115.71	100.05			1.1411	1.2394	45.831	12	7	Median	1.1049	0.94221	66.836	3	2	Median	1.1443	1.3482	46.782	4	3	Median	1.1786	1.2115	16.228	3	0	Median	1.0156	1.099	80.176	2	2	Median	1794600000	919140000	875510000	429840000	207610000	222230000	441090000	225750000	215340000	443710000	204410000	239300000	480000000	281360000	198640000	15037	1363	14261	91003;91004;91005;91006;91007;91008;91009;91010;91011;91012;91013;91014;91015	122959;122960;122961;122962;122963;122964;122965;122966;122967;122968;122969;122970;122971;122972;122973	122966			15	
FAYTGTEMR	0	Unmodified	1074.4804	0.48043033	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.368	33.433	2	0.0022967	29159	160511_QHF_FH_JSI9i_2	74.127	67.956			1.1575	1.1425	27.555	4	0	Median	1.1223	0.9582	NaN	1	0	Median	0.68597	0.82634	NaN	1	0	Median	1.4757	1.4665	NaN	1	0	Median	1.1938	1.3622	NaN	1	0	Median	266560000	115520000	151040000	59939000	21956000	37982000	56120000	33273000	22846000	102190000	44380000	57809000	48316000	15914000	32403000	15038	1588	14262	91016;91017;91018;91019	122974;122975;122976;122977	122975			3	
FAYVPFGAGR	0	Unmodified	1083.5502	0.55016488	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	63.392	62.527	2	0.00011159	52380	160511_QHF_FH_JSI10i_3	104.21	82.507			1.1021	1.1784	7.8301	8	0	Median	1.5067	1.2525	9.191	2	0	Median	0.94636	1.1309	8.8006	2	0	Median	1.1567	1.1283	8.2989	2	0	Median	1.078	1.1314	6.3192	2	0	Median	689460000	322760000	366700000	117460000	55508000	61951000	146660000	77603000	69056000	204310000	88956000	115350000	221030000	100700000	120330000	15039	2771	14263	91020;91021;91022;91023;91024;91025;91026;91027	122978;122979;122980;122981;122982;122983;122984;122985	122981			8	
FAYWSGYVK	1	Unmodified	1119.5389	0.53893149	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			69.255	61.579	2	0.013584	33805	160513_QHF_FH_JSI10Kac_6	53.754	20.492			1.0428	1.2046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0428	1.2046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15958000	7914500	8043700	0	0	0	15958000	7914500	8043700	0	0	0	0	0	0	15040	2925	14264	91028	122986;122987	122986			2	
FCADHPFLFFIQHSK	1	Unmodified	1892.9032	0.90320985	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	5.93			31						13	8	17	10	9	84.207	80.955	2;3;4	4.045E-75	40066	160513_QHF_FH_JSI11Kac_6	238.87	223.48			0.87245	0.91232	27.14	39	6	Median	1.1471	0.95312	18.768	8	1	Median	0.75606	0.87774	16.887	14	3	Median	0.71059	0.679	21.32	8	1	Median	1.1459	1.186	33.383	9	1	Median	15663000000	8038300000	7624700000	2406600000	1227300000	1179300000	4434400000	2338300000	2096000000	4470600000	2548400000	1922200000	4351500000	1924400000	2427100000	15041	1425	14265	91029;91030;91031;91032;91033;91034;91035;91036;91037;91038;91039;91040;91041;91042;91043;91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055;91056;91057;91058;91059;91060;91061;91062;91063;91064;91065;91066;91067;91068;91069;91070;91071;91072	122988;122989;122990;122991;122992;122993;122994;122995;122996;122997;122998;122999;123000;123001;123002;123003;123004;123005;123006;123007;123008;123009;123010;123011;123012;123013;123014;123015;123016;123017;123018;123019;123020;123021;123022;123023;123024;123025;123026;123027;123028;123029;123030;123031;123032;123033;123034;123035;123036;123037;123038;123039;123040;123041;123042;123043;123044;123045;123046;123047;123048;123049;123050;123051;123052;123053;123054;123055;123056;123057;123058;123059;123060	123025			72	
FCADLVEHLK	1	Unmodified	1230.6067	0.60669348	4954	Q9NRG1	PRTFDC1	Phosphoribosyltransferase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.589	53.641	3	0.029391	45940	160511_QHF_FH_JSI12i_2	32.254	27.918			1.2058	1.301	68.55	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78514	0.80126	NaN	1	0	Median	1.8518	2.1125	NaN	1	1	Median	30614000	16463000	14151000	0	0	0	0	0	0	20456000	11802000	8653700	10158000	4660400	5497200	15042	4954	14266	91073;91074	123061;123062	123061			1	
FCAFGGNPPVTGPR	0	Unmodified	1475.698	0.6979681	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	53.818	53.399	2	0.00010083	47293	160511_QHF_FH_JSI11i_3	109.42	102.76			1.2702	0.8399	28.458	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.71781	0.86925	NaN	1	1	Median	0.79192	0.77934	5.7262	2	1	Median	1.4074	1.4091	NaN	1	0	Median	90544000	46144000	44400000	0	0	0	20764000	12496000	8268400	43271000	24382000	18889000	26509000	9266200	17243000	15043	293	14267	91075;91076;91077;91078	123063;123064;123065;123066;123067;123068	123063			6	
FCAGNPGNQALLHK	1	Unmodified	1525.746	0.74598093	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.03	35.957	3	0.00053526	30467	160511_QHF_FH_JSI12i_3	70.54	56.531			1.3253	1.3055	85.786	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73152	0.71175	NaN	1	0	Median	2.4009	2.3945	NaN	1	1	Median	138790000	51893000	86900000	0	0	0	0	0	0	62683000	33935000	28747000	76110000	17957000	58152000	15044	2547	14268	91079;91080	123069;123070	123070			1	
FCDNSSAIQGK	1	Unmodified	1225.5397	0.53973612	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.108	18.919	2	8.8727E-05	16071	160511_QHF_FH_JSI11i_1	89.08	68.454			0.37185	0.3935	12.065	2	1	Median	NaN	NaN	NaN	0	0	Median	0.30971	0.36132	NaN	1	1	Median	0.44647	0.42854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	253920000	182350000	71576000	0	0	0	148300000	112050000	36252000	105620000	70299000	35324000	0	0	0	15045	241	14269	91081;91082	123071;123072	123071			2	
FCENTQAGEGR	0	Unmodified	1267.5251	0.52514869	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	10.899	10.516	2	0.00081024	8186	160511_QHF_FH_JSI11i_1	72.928	59.891			1.6238	1.7516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6238	1.7516	NaN	1	1	Median	36659000	14329000	22330000	0	0	0	0	0	0	0	0	0	36659000	14329000	22330000	15046	3903	14270	91083;91084	123073;123074	123073			2	
FCFAGLLIGQTEVDIMSHATQAIFEILEK	1	Unmodified	3280.6512	0.65120741	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.74	99.016	3;4	1.6995E-202	58618	160513_QHF_FH_JSI10Kac_6	296.29	264.65			0.90709	1.0692	2.7181	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90709	1.0692	2.7181	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	335700000	163470000	172240000	0	0	0	335700000	163470000	172240000	0	0	0	0	0	0	15047	1206	14271	91085;91086	123075;123076;123077;123078	123075			4	
FCFSNEFSTFTHK	1	Unmodified	1650.7137	0.71367774	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	73.549	72.852	2;3	3.9778E-31	64802	160511_QHF_FH_JSI11i_3	184.34	179.62			0.9556	1.0413	23.371	10	0	Median	1.1781	0.99863	33.286	2	0	Median	0.95235	1.1224	8.9429	2	0	Median	0.83085	0.80939	8.9063	3	0	Median	1.3616	1.3801	19.789	3	0	Median	1479100000	694910000	784230000	65449000	27705000	37744000	213550000	99251000	114300000	515770000	276150000	239620000	684370000	291810000	392560000	15048	5573	14272	91087;91088;91089;91090;91091;91092;91093;91094;91095;91096	123079;123080;123081;123082;123083;123084;123085;123086;123087;123088;123089;123090;123091;123092;123093	123082			15	
FCFTPHTEEGCLSER	0	Unmodified	1868.7822	0.78216801	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	48.893	48.431	2;3	2.8285E-07	42814	160511_QHF_FH_JSI11i_3	134.37	126.2			1.0819	1.023	28.318	6	1	Median	1.2153	1.0677	NaN	1	0	Median	1.1421	1.418	NaN	1	0	Median	1.025	0.957	33.244	3	1	Median	0.95857	0.98007	NaN	1	0	Median	356690000	192780000	163910000	30449000	13965000	16484000	68766000	36772000	31995000	187980000	100800000	87178000	69489000	41239000	28250000	15049	1650	14273	91097;91098;91099;91100;91101;91102	123094;123095;123096;123097	123094			4	
FCGGLCGKCRNRK	2	Unmodified	1611.7545	0.7544539	5792				yes	yes	0	0	0	3		By MS/MS			16	0									1		1			79.9	74.259	2	0.061119	40648	160513_QHF_FH_JSI10Kac_6	47.823	7.9064	+		0.71006	0.83966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71006	0.83966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	249980000	154220000	95759000	0	0	0	249980000	154220000	95759000	0	0	0	0	0	0	15050	5792	14274	91103	123098	123098			1	
FCGLMVQLLHK	1	Unmodified	1344.7046	0.70463338	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0			By MS/MS		9.5	6.5			1						1			2		77.189	72.532	3	2.2903E-08	38464	160513_QHF_FH_JSI11Kac_6	115.78	107.27			0.39349	0.3756	45.601	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39349	0.3756	45.601	2	2	Median	NaN	NaN	NaN	0	0	Median	86726000	52523000	34203000	0	0	0	0	0	0	86726000	52523000	34203000	0	0	0	15051	3916	14275	91104;91105	123099;123100	123100			2	
FCGLMVQLLHK	1	Oxidation (M)	1360.6995	0.699548	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	72.231	62.606	3	0.00097985	32776	160513_QHF_FH_JSI12Kac_6	68.893	60.38			1.1698	1.2667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1698	1.2667	NaN	1	1	Median	15113000	7985900	7127200	0	0	0	0	0	0	0	0	0	15113000	7985900	7127200	15052	3916	14275	91106	123101	123101		2350	1	
FCIWTESAFR	0	Unmodified	1315.6019	0.60194245	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.29	6.69		2	2						3		2	2	3	80.478	76.505	2	0.00011482	69661	160511_QHF_FH_JSI11i_2	99.139	93.177			1.2954	1.397	31.794	7	2	Median	NaN	NaN	NaN	0	0	Median	1.1816	1.395	31.448	2	0	Median	1.0793	1.0677	19.018	2	1	Median	2.1818	2.2416	24.351	3	1	Plateau	1183900000	471380000	712550000	0	0	0	248380000	112280000	136100000	379770000	157590000	222190000	555780000	201510000	354270000	15053	1457	14276	91107;91108;91109;91110;91111;91112;91113	123102;123103;123104;123105;123106;123107;123108;123109	123106			8	
FCKNAEEFTK	2	Acetyl (K)	1314.5914	0.59143734	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		50.566	40.039	2	0.00058262	23516	160513_QHF_FH_JSI11Kac_4	90.05	77.013			0.67319	0.73919	89.201	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1333	1.389	NaN	1	0	Median	0.39988	0.39339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25264000	15542000	9721900	0	0	0	8592200	3563600	5028600	16672000	11979000	4693300	0	0	0	15054	2071	14277	91114;91115	123110	123110	2142		1	
FCLDNGAK	1	Unmodified	923.4171	0.41710179	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.97	3	4	4				3	3		2	5	5	5	29.556	25.928	2	2.0121E-05	22358	160511_QHF_FH_JSI9i_2	139.31	101.08			1.0052	1.0955	26.924	15	0	Median	0.95799	0.7883	11.098	2	0	Median	0.98547	1.1826	20.637	5	0	Median	1.0092	0.98703	13.44	4	0	Median	1.3033	1.3934	38.79	4	0	Median	5215800000	2531300000	2684400000	371810000	161920000	209900000	1517700000	781890000	735820000	2160200000	1083800000	1076400000	1166000000	503720000	662330000	15055	775	14278	91116;91117;91118;91119;91120;91121;91122;91123;91124;91125;91126;91127;91128;91129;91130;91131;91132	123111;123112;123113;123114;123115;123116;123117;123118;123119;123120;123121;123122;123123;123124;123125;123126;123127;123128;123129;123130;123131;123132	123123			22	
FCLESERK	1	Unmodified	1067.507	0.50697943	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		19.593	19.593	3	0.042609	16445	160511_QHF_FH_JSI11i_3	28.209	20.026			0.49435	0.46429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49435	0.46429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45819000	29511000	16308000	0	0	0	0	0	0	45819000	29511000	16308000	0	0	0	15056	4619	14279	91133	123133	123133			1	
FCLFHSFFVTK	1	Unmodified	1431.7009	0.70092821	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	5	5	3	3	87.278	82.295	2;3	9.4665E-28	42034	160513_QHF_FH_JSI11Kac_6	183.33	165.2			0.91939	0.99844	39.326	13	3	Median	1.0819	0.92794	48.646	4	1	Median	0.86044	1.0246	52.216	3	1	Median	0.8236	0.77743	36.793	3	1	Median	0.96354	0.99844	9.8534	3	0	Median	2227300000	1143200000	1084100000	460230000	240750000	219470000	751880000	395050000	356830000	540310000	263550000	276760000	474890000	243840000	231040000	15057	4361	14280	91134;91135;91136;91137;91138;91139;91140;91141;91142;91143;91144;91145;91146;91147;91148;91149	123134;123135;123136;123137;123138;123139;123140;123141;123142;123143;123144;123145;123146;123147;123148;123149;123150;123151;123152;123153;123154;123155	123139			22	
FCLICNYLSK	1	Unmodified	1316.6257	0.62571436	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		76.381	76.381	2	0.010134	68248	160511_QHF_FH_JSI11i_3	57.859	48.371			1.1785	1.1155	67.636	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1785	1.1155	67.636	2	2	Median	NaN	NaN	NaN	0	0	Median	64328000	29572000	34756000	0	0	0	0	0	0	64328000	29572000	34756000	0	0	0	15058	1505	14281	91150;91151	123156;123157	123156			2	
FCLQYGAALIYTSVK	1	Unmodified	1732.8858	0.88582845	312;5725	Q9Y6G9;O43237	DYNC1LI1;DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 1;Cytoplasmic dynein 1 light intermediate chain 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		88.518	81.324	2	1.3919E-22	44703	160513_QHF_FH_JSI11Kac_6	143.17	120.64			0.9495	0.96655	5.454	2	1	Median	1.0722	0.92999	NaN	1	1	Median	0.84081	1.0046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131870000	72555000	59316000	34690000	19414000	15276000	97181000	53141000	44040000	0	0	0	0	0	0	15059	5725;312	14282	91152;91153;91154;91155	123158;123159;123160;123161;123162	123158			5	
FCNIMGSSNGVDQEHFSNVVK	1	Unmodified	2368.0576	0.057614594	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.4	0.49		3	2								1	1	3	61.441	60.716	3	2.7084E-15	52331	160511_QHF_FH_JSI12i_3	129.12	120.3			1.0105	0.96357	29.703	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0105	0.96357	NaN	1	0	Median	0.89959	0.97235	42	2	1	Median	181450000	81400000	100050000	0	0	0	0	0	0	82009000	43261000	38749000	99440000	38140000	61300000	15060	5130	14283	91156;91157;91158;91159;91160	123163;123164;123165;123166;123167;123168	123168			6	
FCNRYPNIELSYEVVDK	1	Unmodified	2145.0201	0.0200901	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			70.595	69.131	3	0.0043481	57927	160511_QHF_FH_JSI10i_3	45.33	35.408			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15061	552	14284	91161	123169	123169			1	
FCNTVHDIVNR	0	Unmodified	1373.651	0.65101791	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.692	30.627	3	0.00043793	25740	160511_QHF_FH_JSI12i_3	51.013	47.692			0.66608	0.67045	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66608	0.67045	NaN	1	0	Median	51967000	32326000	19640000	0	0	0	0	0	0	0	0	0	51967000	32326000	19640000	15062	5366	14285	91162	123170	123170			1	
FCPFAER	0	Unmodified	925.41162	0.41162248	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	39.587	38.919	2	0.013007	34284	160511_QHF_FH_JSI10i_2	68.485	63.63			1.0422	1.0923	16.722	6	0	Median	1.4106	1.2031	NaN	1	0	Median	0.8593	1.0705	NaN	1	0	Median	0.90029	0.87408	16.923	2	0	Median	1.1056	1.164	6.1494	2	0	Median	2619700000	1282200000	1337500000	156390000	60598000	95787000	385150000	198040000	187110000	1154900000	615690000	539220000	923260000	407830000	515430000	15063	2093	14286	91163;91164;91165;91166;91167;91168	123171;123172;123173	123172			3	
FCSVLWTYGSSLSNPLNCSVK	1	Unmodified	2418.1348	0.13480228	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								2	1			39.645	38.625	4	0.062161	34002	160511_QHF_FH_JSI9i_2	7.712	4.0494			0.68212	0.83759	5.6481	3	0	Plateau	0.89637	0.75953	0	2	0	Median	0.68212	0.83759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1366300000	692650000	673680000	885770000	403010000	482750000	480570000	289640000	190930000	0	0	0	0	0	0	15064	4733	14287	91169;91170;91171	123174	123174			1	
FCTGLTQIETLFK	1	Unmodified	1556.7909	0.79086543	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.08	1	4	1						2	1	3	2	2	98.509	96.554	2	3.9026E-22	86798	160511_QHF_FH_JSI12i_2	201.6	173.2			1.5177	1.665	58.873	8	1	Median	1.9447	1.6513	NaN	1	0	Median	0.8114	0.99294	68.375	3	1	Median	0.98722	0.97044	79.871	2	0	Median	1.7399	1.8829	3.9004	2	0	Median	2574800000	1210500000	1364300000	320570000	104350000	216220000	676200000	367600000	308610000	851210000	402110000	449100000	726810000	336440000	390380000	15065	1017	14288	91172;91173;91174;91175;91176;91177;91178;91179	123175;123176;123177;123178;123179;123180;123181;123182	123176			8	
FDADYAEK	1	Unmodified	957.40798	0.40797689	953;1699	P0DMN0;P0DMM9;P50225	SULT1A4;SULT1A3;SULT1A1	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1	no	no	0	0	0	0	By MS/MS				1	0	1									1				24.988	23.744	2	0.032995	20367	160511_QHF_FH_JSI9i_1	49.418	38.05			1.0656	0.86405	NaN	1	1	Median	1.0656	0.86405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82717000	28441000	54276000	82717000	28441000	54276000	0	0	0	0	0	0	0	0	0	15066	953;1699	14289	91180	123183	123183			1	
FDAGELITQR	0	Unmodified	1148.5826	0.58258722	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.47	4	4	1				4	5		4	5	4	5	63.479	57.674	2	2.1128E-09	51158	160511_QHF_FH_JSI10i_2	130.66	115.79			1.2853	1.2381	28.649	18	5	Median	1.3404	1.0969	31.799	4	2	Median	1.1064	1.3252	35.758	5	1	Median	1.3216	1.3015	12.851	4	1	Median	1.0941	1.2113	33.859	5	1	Median	11554000000	5000300000	6554000000	1692000000	660820000	1031200000	2488600000	1103500000	1385100000	4205400000	1855800000	2349500000	3168400000	1380100000	1788300000	15067	1424	14290	91181;91182;91183;91184;91185;91186;91187;91188;91189;91190;91191;91192;91193;91194;91195;91196;91197;91198	123184;123185;123186;123187;123188;123189;123190;123191;123192;123193;123194;123195;123196;123197;123198;123199;123200;123201;123202	123201			19	
FDAGTLLLSTHR	0	Unmodified	1329.7041	0.70409934	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	65.763	65.113	3	8.5978E-06	56211	160511_QHF_FH_JSI12i_3	80.871	71.183			0.87687	0.87424	11.561	6	0	Median	0.98983	0.85448	NaN	1	0	Median	0.86532	1.0566	NaN	1	0	Median	0.80871	0.7921	9.8808	2	0	Median	0.83934	0.89606	0.25319	2	0	Median	375700000	198870000	176840000	28574000	17344000	11231000	39189000	21170000	18019000	138090000	80241000	57850000	169850000	80113000	89736000	15068	3342	14291	91199;91200;91201;91202;91203;91204	123203;123204;123205;123206;123207;123208;123209;123210;123211;123212	123212			9	
FDAMPFTLR	0	Unmodified	1096.5376	0.53755128	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.305	75.698	2	2.0592E-06	65460	160511_QHF_FH_JSI12i_2	144.12	132.26			1.1163	1.0599	20.509	6	0	Median	1.1544	1.0013	NaN	1	0	Median	0.77574	0.95483	NaN	1	0	Median	1.2943	1.283	18.967	2	0	Median	1.1165	1.1963	30.596	2	0	Median	1979800000	982060000	997730000	270540000	111710000	158830000	342920000	179830000	163090000	881920000	445760000	436160000	484410000	244770000	239650000	15069	5475	14292	91205;91206;91207;91208;91209;91210	123213;123214;123215;123216;123217;123218;123219;123220;123221;123222;123223	123216			11	
FDASFFGVHPK	1	Unmodified	1250.6084	0.60840804	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.45		11	8					1	4	8	6	4	6	66.835	63.979	2;3	5.104E-23	55072	160511_QHF_FH_JSI12i_2	171.56	155.36			1.0306	1.0776	25.214	22	4	Median	1.3042	1.0771	23.324	7	2	Median	0.93264	1.1155	36.997	6	1	Median	0.97599	0.95639	12.405	4	0	Median	0.86864	0.95386	16.591	5	1	Median	8989600000	4857000000	4132600000	1742000000	881970000	860040000	1950800000	1106900000	843930000	3336700000	1789700000	1547000000	1960000000	1078400000	881590000	15070	1650	14293	91211;91212;91213;91214;91215;91216;91217;91218;91219;91220;91221;91222;91223;91224;91225;91226;91227;91228;91229;91230;91231;91232;91233;91234	123224;123225;123226;123227;123228;123229;123230;123231;123232;123233;123234;123235;123236;123237;123238;123239;123240;123241;123242;123243;123244;123245;123246;123247;123248;123249;123250;123251;123252;123253;123254;123255;123256;123257;123258;123259;123260;123261;123262;123263;123264;123265;123266;123267;123268;123269;123270;123271;123272;123273;123274	123231			50	
FDASFFGVHPKQAHTMDPQLR	1	Acetyl (K);Oxidation (M)	2486.1801	0.18011299	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	74.46	65.583	3;4	1.9188E-37	34952	160513_QHF_FH_JSI9Kac_6	172.3	163.7			1.1016	1.0638	90.297	6	1	Median	1.3289	1.1396	5.4923	2	0	Median	0.83968	0.96005	NaN	1	0	Median	0.37485	0.35159	152.33	2	1	Median	1.0962	1.1657	NaN	1	0	Median	1057100000	455990000	601150000	386510000	177960000	208550000	84266000	49272000	34994000	197500000	156930000	40568000	388860000	71825000	317040000	15071	1650	14294	91235;91236;91237;91238;91239;91240;91241	123275;123276;123277;123278;123279;123280;123281;123282;123283;123284	123279	1664	1314	10	
FDASFFGVHPKQAHTMDPQLR	1	Acetyl (K)	2470.1852	0.18519837	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	77.825	69.11	3;4	9.8379E-89	38657	160513_QHF_FH_JSI10Kac_6	217.82	198.79			1.289	1.1147	225.57	7	3	Median	8.5524	7.3446	266.64	2	1	Median	0.89872	1.075	NaN	1	0	Median	9.7641	9.278	321.16	2	1	Median	8.8816	9.3725	305.27	2	1	Median	2965200000	666380000	2298800000	881100000	100860000	780240000	540200000	273040000	267160000	989260000	169200000	820060000	554640000	123280000	431360000	15072	1650	14294	91242;91243;91244;91245;91246;91247;91248	123285;123286;123287;123288;123289;123290;123291;123292;123293	123293	1664		9	
FDDAVVQSDMK	1	Unmodified	1253.5598	0.55980286	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	45.068	41.498	2	1.5709E-09	37526	160511_QHF_FH_JSI12i_1	133.81	105.98			1.2645	1.3535	22.309	6	2	Median	2.4509	2.0062	NaN	1	1	Median	1.0948	1.3092	19.366	2	1	Median	1.208	1.1693	7.1394	2	0	Median	1.4091	1.4896	NaN	1	0	Median	2531000000	1066200000	1464800000	449860000	113530000	336330000	661070000	328710000	332360000	798550000	337330000	461220000	621480000	286600000	334890000	15073	985	14295	91249;91250;91251;91252;91253;91254;91255;91256	123294;123295;123296;123297;123298;123299;123300;123301;123302;123303;123304;123305	123297			12	
FDDAVVQSDMK	1	Oxidation (M)	1269.5547	0.55471749	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS		7	6	2					2				2	1	1		39.033	32.716	2	0.0011605	36585	160511_QHF_FH_JSI9i_1	79.201	61.382			0.6995	0.28872	63.624	3	1	Plateau	0.31156	0.26129	NaN	1	1	Median	0.6995	0.81557	NaN	1	0	Median	0.77202	0.75547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73972000	49611000	24361000	63843000	44357000	19486000	2409900	1474500	935440	7719000	3778900	3940100	0	0	0	15074	985	14295	91257;91258;91259;91260	123306;123307;123308	123308		562	2	
FDDAVVQSDMKHWPFMVVNDAGRPK	2	Acetyl (K)	2930.3844	0.38436846	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		87.337	78.014	4	7.9079E-10	43416	160513_QHF_FH_JSI11Kac_6	134	119.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62333000	62333000	0	0	0	0	0	0	0	62333000	62333000	0	0	0	0	15075	985	14296	91261	123309;123310	123309	777		2	
FDDDVVSR	0	Unmodified	951.42977	0.42977497	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.544	25.996	2	0.010742	23124	160511_QHF_FH_JSI12i_1	63.419	44.636			1.3345	1.4016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3345	1.4016	NaN	1	1	Median	159330000	70825000	88501000	0	0	0	0	0	0	0	0	0	159330000	70825000	88501000	15076	3922	14297	91262	123311	123311			1	
FDDENFILK	1	Unmodified	1139.5499	0.5498901	5444	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			61.509	59.985	2	0.0033578	50227	160511_QHF_FH_JSI10i_3	70.919	58.872			0.58802	0.67984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58802	0.67984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24249000	18761000	5488200	0	0	0	24249000	18761000	5488200	0	0	0	0	0	0	15077	5444	14298	91263	123312	123312			1	
FDDGAGGDNEVQR	0	Unmodified	1378.5749	0.57493566	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	20.65	17.208	2	1.5397E-82	14761	160511_QHF_FH_JSI9i_1	251.34	236.67			0.97674	1.1033	6.0733	7	0	Median	1.3845	1.1448	NaN	1	0	Median	0.95352	1.1255	1.0533	2	0	Median	1.0635	1.0485	7.2146	2	0	Median	0.96722	1.0153	2.975	2	0	Median	1928800000	990080000	938740000	488630000	230140000	258490000	461280000	257550000	203730000	461410000	223980000	237430000	517510000	278420000	239090000	15078	1449	14299	91264;91265;91266;91267;91268;91269;91270	123313;123314;123315;123316;123317;123318;123319;123320;123321;123322;123323;123324;123325	123323			13	
FDDLSGEYNPEVFDK	1	Unmodified	1773.7734	0.77336069	4058	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	70.498	70.014	2	5.4921E-10	63644	160511_QHF_FH_JSI11i_1	150.21	143.56			0.81003	0.89902	31.437	5	4	Median	1.5816	1.2908	NaN	1	1	Median	0.7289	0.81899	13.185	2	2	Median	1.1844	1.1327	NaN	1	0	Median	0.56337	0.59075	NaN	1	1	Median	99154000	47786000	51368000	16733000	3810900	12922000	40877000	22866000	18011000	21083000	10294000	10789000	20461000	10815000	9646400	15079	4058	14300	91271;91272;91273;91274;91275	123326;123327;123328;123329;123330	123326			5	
FDDPGLMLMGFK	1	Unmodified	1369.641	0.64103007	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	98.796	98.629	2	3.6819E-05	86500	160511_QHF_FH_JSI11i_2	112.75	101.6			0.7039	0.68894	7.3308	5	3	Median	0.7814	0.66024	NaN	1	0	Median	0.53991	0.66449	NaN	1	1	Median	0.75119	0.73843	9.8119	2	2	Median	0.63496	0.69518	NaN	1	0	Median	175620000	95186000	80439000	26801000	12265000	14536000	23696000	13850000	9845800	97869000	56675000	41194000	27258000	12396000	14863000	15080	1023	14301	91276;91277;91278;91279;91280	123331;123332;123333;123334;123335;123336;123337;123338	123335			8	
FDDPLLGPR	0	Unmodified	1028.5291	0.52909508	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	58.962	58.246	2	0.00012134	52824	160511_QHF_FH_JSI11i_1	103.74	93.271			1.0011	0.98266	19.049	5	1	Median	1.4097	1.1698	24.649	2	1	Median	0.77721	0.92742	NaN	1	0	Median	1.0011	0.98337	NaN	1	0	Median	0.81972	0.8416	NaN	1	0	Median	551680000	268770000	282920000	218710000	81473000	137240000	131470000	76738000	54732000	120590000	63116000	57470000	80918000	47441000	33477000	15081	5215	14302	91281;91282;91283;91284;91285	123339;123340;123341;123342;123343;123344;123345	123340			7	
FDDTNPEK	1	Unmodified	964.41379	0.41379055	878;1609	P07814;P47897	EPRS;QARS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase;Glutamine--tRNA ligase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	13.83	12.091	2	0.00056507	10010	160511_QHF_FH_JSI11i_1	104.06	80.085			0.87626	0.9568	17.799	5	0	Median	1.2915	1.0234	NaN	1	0	Median	1.1548	1.3409	NaN	1	0	Median	0.87626	0.84072	NaN	1	0	Median	0.86412	0.93506	3.2517	2	0	Median	4009800000	1985000000	2024800000	996540000	478380000	518160000	1062200000	535300000	526920000	972230000	455690000	516540000	978810000	515610000	463200000	15082	878;1609	14303	91286;91287;91288;91289;91290	123346;123347;123348;123349;123350;123351;123352;123353;123354	123346			9	
FDDTNPEKEK	2	Acetyl (K)	1263.5619	0.56191135	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			28.671	20.556	2	0.041612	12016	160513_QHF_FH_JSI10Kac_3	51.268	17.307			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2857700	0	2857700	0	0	0	2857700	0	2857700	0	0	0	0	0	0	15083	878	14304	91291	123355	123355			1	
FDEHDGPVR	0	Unmodified	1070.4781	0.47812215	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	15.292	14.644	2;3	3.6813E-05	12259	160511_QHF_FH_JSI10i_2	77.192	74.848			0.7955	0.8843	11.771	8	0	Median	1.1127	0.95951	12.882	2	0	Median	0.79256	0.97941	7.1902	2	0	Median	0.76948	0.76706	1.6356	2	0	Median	0.7955	0.87642	2.6029	2	0	Median	726540000	384610000	341930000	153460000	65174000	88283000	152990000	82104000	70887000	260660000	147820000	112840000	159430000	89516000	69916000	15084	1805	14305	91292;91293;91294;91295;91296;91297;91298;91299	123356;123357;123358;123359;123360;123361;123362;123363	123363			7	
FDEIFSATR	0	Unmodified	1084.5189	0.51892433	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.633	50.241	2	0.017264	42980	160511_QHF_FH_JSI12i_2	52.255	25.001			0.36768	0.4054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36768	0.4054	NaN	1	1	Median	76052000	53543000	22509000	0	0	0	0	0	0	0	0	0	76052000	53543000	22509000	15085	3896	14306	91300	123364	123364			1	
FDEILEASDGIMVAR	0	Unmodified	1664.808	0.80797206	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	81.728	80.575	2	1.6048E-07	70898	160511_QHF_FH_JSI11i_2	93.011	81.145			1.8058	1.9504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8058	1.9504	NaN	1	1	Median	25734000	8476400	17257000	0	0	0	0	0	0	0	0	0	25734000	8476400	17257000	15086	1055	14307	91301;91302;91303	123365;123366;123367	123366			3	
FDEISFVNFAR	0	Unmodified	1343.651	0.65100113	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	2	2	1	86.038	85.254	2	6.2666E-18	75805	160511_QHF_FH_JSI10i_2	191.17	173.93			1.1118	1.0461	32.44	7	2	Median	1.4383	1.2085	20.407	2	1	Median	0.75863	0.88101	8.6478	2	0	Median	1.586	1.568	47.65	2	1	Median	0.91479	1.0113	NaN	1	0	Median	1012700000	500280000	512380000	178970000	66606000	112370000	257780000	158090000	99692000	356710000	171180000	185530000	219210000	104410000	114800000	15087	2277	14308	91304;91305;91306;91307;91308;91309;91310	123368;123369;123370;123371;123372;123373;123374;123375;123376;123377;123378;123379	123379			12	
FDENGLPTHDMEGK	1	Unmodified	1588.6828	0.68277155	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	40.798	40.165	3	0.00186	36462	160511_QHF_FH_JSI12i_1	40.237	35.769			1.1243	1.2264	8.3664	5	0	Median	NaN	NaN	NaN	0	0	Median	0.95765	1.1128	NaN	1	0	Median	1.1554	1.1371	10.696	2	0	Median	1.1705	1.2674	1.3448	2	0	Median	249060000	113520000	135540000	0	0	0	49252000	27808000	21444000	111650000	47078000	64576000	88155000	38636000	49519000	15088	1665	14309	91311;91312;91313;91314;91315	123380;123381;123382	123382			2	
FDETEQALANER	0	Unmodified	1421.6423	0.64228694	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.557	34.952	2	2.3486E-23	31446	160511_QHF_FH_JSI11i_1	181.31	159.86			1.025	1.0419	6.4901	4	1	Median	1.2341	1.0138	NaN	1	1	Median	0.95298	1.1379	NaN	1	0	Median	0.99599	0.98143	NaN	1	0	Median	1.0549	1.0708	NaN	1	0	Median	506700000	264040000	242660000	108690000	40446000	68246000	130940000	82849000	48095000	179660000	93394000	86264000	87406000	47355000	40051000	15089	3216	14310	91316;91317;91318;91319;91320	123383;123384;123385;123386;123387;123388	123383			6	
FDETEQALANERK	1	Unmodified	1549.7372	0.73724996	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	28.443	27.768	2;3	6.9781E-05	23282	160511_QHF_FH_JSI11i_2	74.733	69.555			1.0537	1.1762	33.879	6	1	Median	1.4798	1.2595	NaN	1	0	Median	0.90114	1.0983	NaN	1	0	Median	1.4758	1.4679	64.016	2	1	Median	1.0321	1.1137	26.301	2	0	Median	559520000	289000000	270510000	145650000	70332000	75314000	126410000	72762000	53644000	126420000	58110000	68306000	161050000	87802000	73246000	15090	3216	14311	91321;91322;91323;91324;91325;91326	123389;123390;123391;123392;123393	123391			5	
FDFLLAWHK	1	Unmodified	1175.6128	0.61276513	569	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	1	2	3	3	87.032	83.22	3	8.7021E-06	42198	160513_QHF_FH_JSI11Kac_6	108.98	102.32			0.94523	0.93908	56.651	9	5	Median	1.1211	0.93908	NaN	1	0	Median	0.76887	0.92304	27.896	2	1	Median	0.98826	0.92885	84.019	3	2	Median	0.89168	0.96099	68.658	3	2	Median	717560000	379790000	337770000	130580000	75953000	54624000	218120000	122650000	95470000	191330000	99276000	92052000	177540000	81911000	95624000	15091	569	14312	91327;91328;91329;91330;91331;91332;91333;91334;91335	123394;123395;123396;123397;123398;123399;123400;123401;123402;123403;123404;123405;123406;123407;123408	123398			15	
FDFPVSYLPGPVK	1	Unmodified	1464.7653	0.76530261	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		97.532	97.331	2	0.00069328	86161	160511_QHF_FH_JSI10i_2	83.31	67.419			2.3875	2.6903	17.62	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9385	2.3752	NaN	1	1	Median	2.9404	3.0473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57066000	18758000	38307000	0	0	0	21288000	7127300	14161000	35778000	11631000	24147000	0	0	0	15092	5104	14313	91336;91337	123409;123410	123410			2	
FDFPYPNVEEAQK	1	Unmodified	1582.7304	0.73037367	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.107	74.616	2	0.00022935	66297	160511_QHF_FH_JSI9i_1	78.653	63.68			0.58777	0.6353	7.5686	4	2	Median	0.79331	0.64177	NaN	1	0	Median	0.5885	0.68006	NaN	1	1	Median	0.58704	0.56719	NaN	1	1	Median	0.5851	0.6289	NaN	1	0	Median	122570000	81795000	40775000	20633000	12818000	7814700	29287000	18269000	11018000	29057000	17235000	11822000	43594000	33472000	10121000	15093	3094	14314	91338;91339;91340;91341	123411;123412;123413;123414;123415	123413			5	
FDFQAQSPK	1	Unmodified	1066.5084	0.50835964	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		39.801	39.048	2	0.0031321	33612	160511_QHF_FH_JSI11i_2	71.708	63.289			1.0372	0.99179	78.631	2	2	Median	2.0156	1.7294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53372	0.56879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58711000	33777000	24934000	20226000	8923600	11302000	0	0	0	38485000	24854000	13631000	0	0	0	15094	422	14315	91342;91343	123416;123417	123417			2	
FDFVHDLVLYLYR	0	Unmodified	1698.877	0.87697832	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			97.356	89.379	3	4.4639E-11	50539	160513_QHF_FH_JSI9Kac_6	138.42	121.35			0.99146	1.1076	21.239	3	3	Plateau	0.93852	0.80614	0.92458	2	2	Median	0.99146	1.1644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1687500000	847990000	839500000	750450000	396270000	354180000	937040000	451720000	485320000	0	0	0	0	0	0	15095	2155	14316	91344;91345;91346	123418;123419;123420	123419			3	
FDGAEGSWFQK	1	Unmodified	1270.5619	0.56185177	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		57.629	56.934	2	0.006411	49401	160511_QHF_FH_JSI11i_2	62.005	43.78			0.73675	0.81693	1.5399	2	2	Median	NaN	NaN	NaN	0	0	Median	0.67764	0.82587	NaN	1	1	Median	0.80101	0.80808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	121510000	70588000	50923000	0	0	0	51844000	30929000	20915000	69666000	39658000	30008000	0	0	0	15096	3900	14317	91347;91348	123421;123422	123421			2	
FDGAKGPAK	2	Acetyl (K)	931.47633	0.47633123	278	O15347	HMGB3	High mobility group protein B3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	22.624	14.307	2	0.0029642	9303	160513_QHF_FH_JSI10Kac_4	81.548	61.266			0.97631	0.9874	7.8845	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.89064	1.0385	NaN	1	0	Median	1.0061	0.9874	NaN	1	0	Median	0.824	0.88973	NaN	1	1	Median	29387000	17524000	11862000	0	0	0	10187000	4921900	5265500	13282000	7472900	5808600	5917800	5129500	788220	15097	278	14318	91349;91350;91351	123423;123424;123425	123423	148		3	
FDGALNVDLTEFQTNLVPYPR	0	Unmodified	2408.2012	0.20122559	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.92	8	7	3						5	6	5	4	8	99.99	98.046	2;3	0	92161	160511_QHF_FH_JSI11i_1	511.4	465.24			1.1122	1.0731	10.089	23	3	Median	1.3008	1.0675	7.4727	6	2	Median	0.84651	0.98257	6.7892	5	0	Median	1.1598	1.1531	6.4067	4	0	Median	1.0463	1.1071	11.375	8	1	Median	22939000000	11560000000	11380000000	3542400000	1703800000	1838600000	6141100000	3274000000	2867100000	4715700000	2257800000	2457900000	8540200000	4324200000	4216000000	15098	2073;2074;4359	14319	91352;91353;91354;91355;91356;91357;91358;91359;91360;91361;91362;91363;91364;91365;91366;91367;91368;91369;91370;91371;91372;91373;91374	123426;123427;123428;123429;123430;123431;123432;123433;123434;123435;123436;123437;123438;123439;123440;123441;123442;123443;123444;123445;123446;123447;123448;123449;123450;123451	123427			26	
FDGGEEVLISGEFNDLRK	1	Unmodified	2023.9851	0.9850848	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	78.352	77.647	3	4.908E-06	68202	160511_QHF_FH_JSI11i_2	90.422	84.3			0.97369	0.99068	5.1309	4	1	Median	NaN	NaN	NaN	0	0	Median	0.79429	0.98916	NaN	1	0	Median	0.96859	0.99221	NaN	1	0	Median	0.97886	1.0354	7.7108	2	1	Median	479430000	257320000	222110000	0	0	0	98451000	50921000	47531000	137810000	61728000	76086000	243160000	144670000	98490000	15099	2754	14320	91375;91376;91377;91378	123452;123453;123454;123455	123453			4	
FDGILGMAYPR	0	Unmodified	1238.6118	0.61177885	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	77.842	77.179	2	6.1798E-10	68637	160511_QHF_FH_JSI10i_2	138.4	133.43			0.84926	0.83878	6.0299	5	1	Median	0.95702	0.81112	NaN	1	0	Median	0.66931	0.83878	NaN	1	0	Median	0.88363	0.85367	3.0528	2	1	Median	0.83726	0.94782	NaN	1	0	Median	536120000	295760000	240360000	95016000	48720000	46296000	104530000	67876000	36658000	199120000	97166000	101950000	137460000	81999000	55456000	15100	869	14321	91379;91380;91381;91382;91383	123456;123457;123458;123459;123460;123461;123462	123462			7	
FDGILTEGEGPR	0	Unmodified	1289.6252	0.62518031	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		51.399	50.559	2	1.5261E-05	43631	160511_QHF_FH_JSI11i_2	113.93	96.541			0.55532	0.6334	23.785	3	1	Plateau	0.74974	0.6334	NaN	1	1	Median	0.69849	0.86918	NaN	1	0	Median	0.54319	0.54551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	272070000	160700000	111370000	71881000	39878000	32003000	68261000	40641000	27620000	131930000	80183000	51746000	0	0	0	15101	4109	14322	91384;91385;91386	123463;123464;123465;123466;123467	123465			5	
FDGSENRPFSPSPLNNISSTVTVK	1	Unmodified	2592.282	0.2819951	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			73.519	72.51	3	0.0057614	63936	160511_QHF_FH_JSI9i_2	33.665	16.296			0.71328	0.80053	10.249	3	1	Median	0.95417	0.81715	NaN	1	0	Median	0.63739	0.73664	11.763	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58825000	37908000	20917000	20666000	11475000	9190600	38160000	26433000	11727000	0	0	0	0	0	0	15102	2977	14323	91387;91388;91389	123468;123469;123470	123469			3	
FDHALVPEENINGVISALK	1	Unmodified	2065.0844	0.084404917	29	A6NHX0	GATSL2	GATS-like protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.331	91.844	3	0.039814	80723	160511_QHF_FH_JSI11i_2	27.324	14.476			1.0395	0.98991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0395	0.98991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15337000	6148900	9188400	0	0	0	0	0	0	15337000	6148900	9188400	0	0	0	15103	29	14324	91390	123471	123471			1	
FDHAMVAFLDCVQQFK	1	Unmodified	1954.907	0.9069746	2537	Q14457	BECN1	Beclin-1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.15	102.07	3	0.05296	89946	160511_QHF_FH_JSI9i_2	25.866	9.5597			1.3415	1.1584	NaN	1	1	Median	1.3415	1.1584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79412000	31207000	48206000	79412000	31207000	48206000	0	0	0	0	0	0	0	0	0	15104	2537	14325	91391	123472	123472			1	
FDHVPLATPNGDVLIR	0	Unmodified	1762.9366	0.93661847	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	3	2	71.437	70.607	2;3	5.806E-05	61091	160511_QHF_FH_JSI12i_2	68.978	58.921			0.83825	0.83311	38.632	5	5	Median	0.96773	0.83311	NaN	1	1	Median	0.41547	0.50553	NaN	1	1	Median	1.0451	1.0647	46.439	2	2	Median	0.83825	0.93686	NaN	1	1	Median	578860000	324960000	253910000	11820000	4922000	6898200	20354000	16828000	3525900	380140000	216990000	163150000	166550000	86214000	80337000	15105	1304	14326	91392;91393;91394;91395;91396;91397;91398;91399	123473;123474;123475;123476;123477;123478;123479;123480	123474			8	
FDILFNR	0	Unmodified	923.4865	0.48650199	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.156	70.271	2	0.017885	62047	160511_QHF_FH_JSI9i_2	64.776	35.203			0.53145	0.59821	20.656	4	0	Median	0.97183	0.84918	NaN	1	0	Median	0.49702	0.6099	NaN	1	0	Median	0.56826	0.58676	NaN	1	0	Median	0.48343	0.52562	NaN	1	0	Median	102120000	60826000	41293000	18865000	9705800	9159100	21333000	13992000	7341400	34880000	18454000	16426000	27041000	18675000	8366100	15106	3032	14327	91400;91401;91402;91403	123481;123482	123482			2	
FDINDATGDLDANRPVPFR	0	Unmodified	2132.0287	0.028680952	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	80.045	79.692	3	1.0549E-05	69147	160511_QHF_FH_JSI12i_3	82.707	70.043			1.3904	1.4941	2.978	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2498	1.5259	NaN	1	1	Median	1.5469	1.463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44795000	18851000	25944000	0	0	0	21183000	9813200	11370000	23612000	9037600	14574000	0	0	0	15107	5618	14328	91404;91405;91406;91407	123483;123484;123485;123486;123487	123487			5	
FDISLKK	2	Unmodified	849.496	0.49600404	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.358	40.163	3	0.016041	34281	160511_QHF_FH_JSI12i_3	43.246	9.6959			0.5714	0.58549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5714	0.58549	NaN	1	1	Median	16647000	8111400	8535700	0	0	0	0	0	0	0	0	0	16647000	8111400	8535700	15108	3712	14329	91408	123488	123488			1	
FDITIGPK	1	Unmodified	889.49092	0.49091866	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		59.217	58.714	2	0.012376	50969	160511_QHF_FH_JSI11i_2	52.716	26.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15109	5535	14330	91409	123489	123489			1	
FDLIWNR	0	Unmodified	962.4974	0.49740102	2965	Q5TC12	ATPAF1	ATP synthase mitochondrial F1 complex assembly factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	72.95	72.314	2	0.012699	64295	160511_QHF_FH_JSI11i_3	73.039	44.527			1.4198	1.2018	23.147	5	5	Median	1.4198	1.2018	NaN	1	1	Median	0.8264	0.99227	NaN	1	1	Median	1.561	1.4724	NaN	1	1	Median	1.1156	1.1847	36.882	2	2	Median	216860000	93033000	123830000	26825000	10809000	16017000	50652000	26717000	23935000	59933000	21201000	38732000	79449000	34306000	45143000	15110	2965	14331	91410;91411;91412;91413;91414	123490;123491;123492;123493;123494	123490			5	
FDLLFIMLDQMDPEQDREISDHVLR	0	Unmodified	3074.4841	0.48414209	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			97.518	91.798	3;4	2.5311E-13	53456	160513_QHF_FH_JSI10Kac_6	146.39	134.47			0.52345	0.61732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52345	0.61732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	405510000	308220000	97290000	0	0	0	405510000	308220000	97290000	0	0	0	0	0	0	15111	1254	14332	91415;91416	123495;123496	123495			2	
FDLLWLIQDRPDR	0	Unmodified	1685.8889	0.88893999	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			93.1	87.379	3	2.0621E-09	50095	160513_QHF_FH_JSI10Kac_6	118.37	100.86			0.55134	0.65901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55134	0.65901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139350000	104720000	34638000	0	0	0	139350000	104720000	34638000	0	0	0	0	0	0	15112	1411	14333	91417;91418	123497;123498	123497			2	
FDLMYAK	1	Unmodified	886.42588	0.42587556	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.44	5	7	5				3	4	4	6	9	7	6	59.548	55.032	1;2	0.0014769	29731	160513_QHF_FH_JSI11Kac_6	107.66	70.638			0.9572	0.99806	30.204	28	3	Median	1.2379	1.0626	6.8181	6	0	Median	0.8081	0.96851	49.359	9	2	Median	0.98567	0.92785	26.795	7	1	Median	0.91221	0.98843	8.1208	6	0	Median	40605000000	17997000000	22608000000	7250500000	2912600000	4337800000	9951300000	4810800000	5140500000	14947000000	6330600000	8616100000	8456100000	3942500000	4513600000	15113	27;2073;2074;4359	14334	91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438;91439;91440;91441;91442;91443;91444;91445;91446	123499;123500;123501;123502;123503;123504;123505;123506;123507;123508;123509;123510;123511;123512;123513;123514;123515;123516;123517;123518;123519;123520;123521;123522;123523;123524;123525;123526;123527;123528;123529;123530;123531;123532;123533;123534;123535;123536;123537;123538;123539;123540;123541;123542;123543;123544;123545;123546;123547;123548;123549;123550;123551;123552;123553	123519			55	
FDLMYAK	1	Oxidation (M)	902.42079	0.42079019	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.71	4	4					2	2	2	3	3	4	4	48.905	44.016	2	0.0070903	24307	160513_QHF_FH_JSI11Kac_5	86.086	44.584			0.9002	0.96264	17.446	14	1	Median	1.0044	0.84099	10.505	3	0	Median	0.83874	1.0144	1.8734	3	0	Plateau	0.95206	0.96264	11.139	4	0	Median	0.75857	0.84383	25.808	4	1	Median	3485600000	1820600000	1665100000	542070000	255240000	286830000	917160000	494280000	422880000	1159100000	576070000	583000000	867320000	494970000	372360000	15114	27;2073;2074;4359	14334	91447;91448;91449;91450;91451;91452;91453;91454;91455;91456;91457;91458;91459;91460	123554;123555;123556;123557;123558;123559;123560;123561;123562;123563;123564;123565;123566;123567;123568;123569;123570;123571	123566		8	18	
FDLMYAKR	1	Unmodified	1042.527	0.52698659	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By matching		By MS/MS	By MS/MS	3	0			4							1		1	2	43.639	43.123	2;3	0.00047797	36596	160511_QHF_FH_JSI12i_3	75.109	55.323			1.027	0.71555	25.316	4	1	Linear	0.77131	0.62854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78211	0.73008	NaN	1	0	Median	0.88723	0.88582	33.031	2	1	Median	381860000	205620000	176240000	55593000	29828000	25766000	0	0	0	95063000	48605000	46458000	231200000	127180000	104010000	15115	27;2073;2074;4359	14335	91461;91462;91463;91464	123572;123573;123574;123575	123573			4	
FDLMYAKR	1	Acetyl (K);Oxidation (M)	1100.5325	0.5324659	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	15.1	0.781							2	3	3		3	3	2	60.921	50.659	2	0.00029664	27631	160513_QHF_FH_JSI11Kac_5	116.88	81.39			0.39885	0.43156	85.8	8	0	Median	NaN	NaN	NaN	0	0	Median	1.2699	1.5019	20.082	3	0	Median	0.27508	0.26923	9.3212	3	0	Plateau	0.39885	0.43156	1.1134	2	0	Median	307450000	219200000	88242000	0	0	0	47401000	22498000	24902000	207120000	159770000	47353000	52923000	36937000	15986000	15116	27;2073;2074;4359	14335	91465;91466;91467;91468;91469;91470;91471;91472	123576;123577;123578;123579;123580;123581	123578	3	8	6	
FDLMYAKR	1	Acetyl (K)	1084.5376	0.53755128	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.786							2	3	4	1	3	3	2	71.271	61.383	2	2.1158E-22	33692	160513_QHF_FH_JSI10Kac_6	178.08	139.29			0.44389	0.48146	70.414	9	0	Median	0.59285	0.52191	NaN	1	0	Median	1.1041	1.3131	9.1764	3	0	Plateau	0.28077	0.26311	18.004	3	0	Plateau	0.41755	0.45068	9.341	2	0	Median	1850600000	1395600000	455070000	28533000	20238000	8295500	235020000	110490000	124530000	1407800000	1138300000	269450000	179340000	126540000	52794000	15117	27;2073;2074;4359	14335	91473;91474;91475;91476;91477;91478;91479;91480;91481	123582;123583;123584;123585;123586;123587;123588;123589;123590;123591;123592;123593	123593	3		12	
FDLNEPLHLSFLQNAAK	1	Unmodified	1956.0105	0.010511692	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	98.811	98.713	3	3.0503E-08	85427	160511_QHF_FH_JSI12i_3	126.07	119.95			1.0024	1.0519	31.802	6	1	Median	0.99647	0.83814	NaN	1	0	Median	0.83337	0.99971	NaN	1	0	Median	1.2334	1.1848	25.899	2	0	Median	1.413	1.496	42.606	2	1	Median	311220000	132340000	178890000	22528000	9726100	12802000	26478000	16632000	9845700	121150000	52295000	68855000	141070000	53683000	87386000	15118	5	14336	91482;91483;91484;91485;91486;91487	123594;123595;123596;123597;123598;123599;123600;123601;123602;123603;123604	123604			11	
FDLNKPVR	1	Unmodified	987.55016	0.55016488	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		31.163	30.473	3	0.013939	25498	160511_QHF_FH_JSI10i_3	41.029	31.815			1.0059	1.0375	6.5668	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86494	0.99047	NaN	1	0	Median	1.1697	1.0869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125180000	47722000	77459000	0	0	0	46600000	23232000	23368000	78580000	24490000	54090000	0	0	0	15119	5222	14337	91488;91489	123605	123605			1	
FDLPDMK	1	Unmodified	864.40514	0.40514012	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.497	58.852	2	0.020108	53596	160511_QHF_FH_JSI12i_1	57.281	41.127			1.1701	1.2165	10.67	4	0	Median	1.4779	1.2495	NaN	1	0	Median	1.0119	1.1844	NaN	1	0	Median	1.3531	1.2777	NaN	1	0	Median	0.97873	1.0087	NaN	1	0	Median	206430000	94719000	111710000	30075000	14474000	15601000	57844000	25866000	31979000	66284000	27503000	38781000	52230000	26876000	25354000	15120	1162	14338	91490;91491;91492;91493	123606;123607	123607			2	
FDLQIQSSNLFDK	1	Unmodified	1553.7726	0.77257283	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.108	86.118	2	9.8426E-05	74396	160511_QHF_FH_JSI12i_2	112.15	94.711			1.6138	1.8091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6138	1.8091	NaN	1	1	Median	9114600	3416400	5698200	0	0	0	0	0	0	0	0	0	9114600	3416400	5698200	15121	859	14339	91494	123608	123608			1	
FDLRPFLYNTSWPWQFR	0	Unmodified	2272.1218	0.12179348	3049	Q6IA69	NADSYN1	Glutamine-dependent NAD(+) synthetase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.101	91.38	3	2.1067E-16	53098	160513_QHF_FH_JSI10Kac_6	133.86	117.91			0.79987	0.95466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79987	0.95466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125790000	70111000	55682000	0	0	0	125790000	70111000	55682000	0	0	0	0	0	0	15122	3049	14340	91495	123609;123610	123609			2	
FDLSQNHPLGMAIFLK	1	Oxidation (M)	1845.9447	0.94474031	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	2	3	5	5	82.068	77.431	2;3	1.3729E-23	40075	160513_QHF_FH_JSI11Kac_6	155.02	131.17			0.99712	1.0275	23.697	12	2	Median	1.3197	1.1121	13.036	2	0	Median	1.0308	1.1968	5.4633	2	0	Median	0.8354	0.77168	7.4676	4	0	Median	1.0406	1.0833	28.819	4	2	Median	2573800000	1293500000	1280300000	683120000	326100000	357010000	528960000	256560000	272400000	699050000	377260000	321790000	662660000	333610000	329060000	15123	1650	14341	91496;91497;91498;91499;91500;91501;91502;91503;91504;91505;91506;91507;91508;91509;91510	123611;123612;123613;123614;123615;123616;123617;123618;123619;123620;123621;123622;123623;123624;123625;123626;123627;123628;123629;123630;123631;123632;123633	123619		1315	23	
FDLSQNHPLGMAIFLK	1	Unmodified	1829.9498	0.94982569	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.52		8	9						10	7	8	6	6	94.196	91.31	2;3	3.8943E-85	45692	160513_QHF_FH_JSI10Kac_6	265.22	219.25			0.8514	0.89669	18.786	26	5	Median	1.3734	1.147	15.636	6	1	Median	0.7265	0.86893	12.714	8	2	Median	0.77344	0.75762	15.406	6	1	Median	0.77368	0.825	17.683	6	1	Median	10026000000	4847800000	5178200000	1635400000	674120000	961300000	2562000000	1420900000	1141100000	2525800000	1288300000	1237500000	3302800000	1464600000	1838300000	15124	1650	14341	91511;91512;91513;91514;91515;91516;91517;91518;91519;91520;91521;91522;91523;91524;91525;91526;91527;91528;91529;91530;91531;91532;91533;91534;91535;91536;91537	123634;123635;123636;123637;123638;123639;123640;123641;123642;123643;123644;123645;123646;123647;123648;123649;123650;123651;123652;123653;123654;123655;123656;123657;123658;123659;123660;123661;123662;123663;123664;123665;123666;123667;123668;123669;123670;123671;123672;123673;123674;123675;123676;123677;123678;123679;123680;123681;123682;123683;123684;123685;123686;123687;123688;123689;123690;123691;123692;123693;123694;123695;123696;123697;123698;123699;123700;123701;123702	123701			69	
FDLVSFIPLLR	0	Unmodified	1318.7649	0.76490868	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	103	102.94	2	0.0013463	85450	160511_QHF_FH_JSI10i_3	64.297	59.685			0.81865	0.88276	6.7436	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70969	0.84165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94434	0.92587	NaN	1	0	Median	41363000	20832000	20532000	0	0	0	8566500	4279500	4287100	0	0	0	32797000	16552000	16244000	15125	2280	14342	91538;91539	123703	123703			1	
FDMAENVVIVASQK	1	Unmodified	1549.781	0.78102903	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		77.595	76.856	2	9.8885E-10	67662	160511_QHF_FH_JSI11i_2	104.17	77.502			1.0366	1.0788	12.722	2	2	Median	1.1169	0.98596	NaN	1	1	Median	0.96208	1.1803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36659000	18475000	18184000	16522000	8167700	8354800	20136000	10308000	9828700	0	0	0	0	0	0	15126	3290	14343	91540;91541;91542	123704;123705;123706	123705			3	
FDMELDDLPK	1	Unmodified	1221.5587	0.55874023	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.778	75.605	2	0.011472	68664	160511_QHF_FH_JSI10i_1	46.406	39.186			0.14774	0.17219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.14774	0.17219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51247000	38376000	12871000	0	0	0	51247000	38376000	12871000	0	0	0	0	0	0	15127	1309	14344	91543	123707	123707			1	
FDMIFIVK	1	Unmodified	1011.5463	0.54632505	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	89.423	85.032	2	0.0022198	45018	160513_QHF_FH_JSI10Kac_6	91.9	91.9			0.99901	1.0333	8.43	8	0	Median	1.2705	1.0705	9.4471	2	0	Median	0.81918	0.98741	10.869	2	0	Median	0.98469	0.95606	6.241	2	0	Median	0.99901	1.0938	2.0203	2	0	Median	1005200000	487990000	517200000	215300000	81835000	133470000	379170000	212740000	166440000	226860000	104920000	121940000	183850000	88501000	95348000	15128	1410	14345	91544;91545;91546;91547;91548;91549;91550;91551	123708;123709;123710;123711;123712;123713;123714	123714			7	
FDMIFIVK	1	Oxidation (M)	1027.5412	0.54123967	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.737							3	4	2	1	2	2	4	77.024	66.712	2	0.00030311	32946	160513_QHF_FH_JSI12Kac_5	114.6	109.75			1.2294	1.2965	50.296	9	2	Median	1.2294	1.0424	NaN	1	0	Median	1.1685	1.3804	8.87	2	0	Median	0.72811	0.70016	48.448	2	0	Median	1.8089	1.951	41.576	4	2	Median	155520000	58265000	97252000	14041000	6226500	7814800	21439000	10755000	10684000	13350000	6215800	7134400	106690000	35067000	71619000	15129	1410	14345	91552;91553;91554;91555;91556;91557;91558;91559;91560	123715;123716;123717;123718;123719;123720;123721;123722;123723	123719		1057	9	
FDMIVPILEK	1	Unmodified	1203.6573	0.65733206	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	2	3	1	98.632	98.497	2	7.7047E-06	86396	160511_QHF_FH_JSI9i_2	108.67	88.147			1.1312	1.2651	56.353	6	6	Median	0.83085	0.70248	NaN	1	1	Median	0.91549	1.1166	NaN	1	1	Median	1.3977	1.4333	61.091	3	3	Median	2.1774	2.4513	NaN	1	1	Median	515960000	160280000	355680000	49648000	25655000	23993000	93597000	43449000	50148000	216010000	51618000	164390000	156710000	39562000	117140000	15130	2403	14346	91561;91562;91563;91564;91565;91566;91567;91568	123724;123725;123726;123727;123728;123729;123730;123731;123732;123733	123730			10	
FDMQVTVPRPDVK	1	Unmodified	1530.7864	0.78644876	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.992	63.706	3	0.027148	54922	160511_QHF_FH_JSI12i_3	34.432	22.517			0.50446	0.51888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50446	0.51888	NaN	1	0	Median	64438000	42389000	22049000	0	0	0	0	0	0	0	0	0	64438000	42389000	22049000	15131	4261	14347	91569	123734	123734			1	
FDNIGMNAMANK	1	Unmodified	1324.5904	0.59039149	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	48.704	47.813	2	1.3842E-05	42233	160511_QHF_FH_JSI10i_2	127.4	115.35			1.1835	1.2109	22.162	5	3	Median	1.2679	1.0995	NaN	1	0	Median	0.73771	0.91005	NaN	1	1	Median	1.3931	1.4214	22.669	2	2	Median	1.1835	1.2773	NaN	1	0	Median	276820000	127780000	149050000	42637000	22277000	20360000	47293000	25560000	21733000	129800000	51594000	78203000	57097000	28348000	28749000	15132	2213	14348	91570;91571;91572;91573;91574	123735;123736;123737;123738	123738			4	
FDNLYGCR	0	Unmodified	1043.4495	0.44946455	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.029	29.713	2	0.022268	25021	160511_QHF_FH_JSI12i_2	44.117	36.887			1.1939	1.3161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1939	1.3161	NaN	1	0	Median	127470000	56107000	71364000	0	0	0	0	0	0	0	0	0	127470000	56107000	71364000	15133	1234	14349	91575	123739	123739			1	
FDNSYSLWR	0	Unmodified	1186.5407	0.5407224	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.92	59.001	2	0.010811	50569	160511_QHF_FH_JSI12i_2	49.527	36.49			0.89511	1.0635	11.373	4	0	Linear	0.96194	0.80845	NaN	1	0	Median	0.80099	1.0053	NaN	1	0	Median	1.0413	1.047	NaN	1	0	Median	0.83292	0.93433	NaN	1	0	Median	362790000	189460000	173330000	61679000	31593000	30086000	97090000	49705000	47385000	117110000	56096000	61010000	86912000	52061000	34851000	15134	4700	14350	91576;91577;91578;91579	123740;123741;123742	123740			3	
FDNVLPVSLAFDK	1	Unmodified	1463.766	0.76603089	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	96.14	95.774	2	0.0011177	84036	160511_QHF_FH_JSI11i_2	76.326	62.168			0.95215	0.99437	27.867	4	4	Median	NaN	NaN	NaN	0	0	Median	0.77207	0.90866	NaN	1	1	Median	1.0002	1.0155	NaN	1	1	Median	1.1671	1.276	38.236	2	2	Median	77790000	35240000	42550000	0	0	0	16391000	9806600	6584600	23501000	9280400	14221000	37898000	16153000	21745000	15135	680	14351	91580;91581;91582;91583	123743;123744;123745;123746	123745			4	
FDPETNSDDACTYHPGVPVFHDALK	1	Unmodified	2831.2497	0.2497087	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.762	66.466	4	3.3519E-09	57434	160511_QHF_FH_JSI12i_3	89.946	86.981			1.6051	1.5975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6051	1.5975	NaN	1	1	Median	60609000	20126000	40483000	0	0	0	0	0	0	0	0	0	60609000	20126000	40483000	15136	5296	14352	91584	123747	123747			1	
FDPVGPLPGPNPILPGR	0	Unmodified	1741.9515	0.95154025	5597	Q9Y3I1	FBXO7	F-box only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.774	89.185	2	0.00013005	79237	160511_QHF_FH_JSI10i_2	88.441	72.551			2.237	2.704	54.972	4	3	Median	5.574	4.9287	NaN	1	1	Median	2.1187	2.7244	NaN	1	1	Median	1.271	1.2871	NaN	1	0	Median	2.3618	2.6837	NaN	1	1	Median	63246000	22831000	40414000	16348000	4791100	11557000	12865000	3507800	9357400	23627000	10510000	13116000	10406000	4022300	6383700	15137	5597	14353	91585;91586;91587;91588	123748;123749;123750;123751	123751			4	
FDPYEHEALFHTPVEGKEPGTVALVSK	2	Unmodified	2996.492	0.49198788	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.545	73.251	4	1.7068E-05	63682	160511_QHF_FH_JSI12i_3	50.055	44.172			1.0007	1.0044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0007	1.0044	NaN	1	1	Median	102700000	53761000	48938000	0	0	0	0	0	0	0	0	0	102700000	53761000	48938000	15138	4832	14354	91589	123752	123752			1	
FDQIYDVGYQYGK	1	Unmodified	1594.7304	0.73037367	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.693	62.048	2	3.9569E-05	56479	160511_QHF_FH_JSI12i_1	79.82	55.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15139	3452	14355	91590	123753	123753			1	
FDQLFDDESDPFEVLK	1	Unmodified	1942.8836	0.88363942	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.32	101.21	2	2.6023E-116	91903	160511_QHF_FH_JSI11i_1	269.7	219.51			0.98968	0.98819	12.035	4	0	Median	1.1358	0.94401	NaN	1	0	Median	1.0117	1.1878	NaN	1	0	Median	0.91935	0.905	NaN	1	0	Median	0.96812	1.0344	NaN	1	0	Median	818350000	407100000	411240000	66962000	29433000	37529000	252620000	116920000	135710000	238810000	118100000	120710000	259950000	142650000	117300000	15140	3609	14356	91591;91592;91593;91594	123754;123755;123756;123757;123758;123759;123760	123755			7	
FDQLLAEEK	1	Unmodified	1091.5499	0.5498901	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	0	0	0	0			By MS/MS		1	0	1											1		41.121	40.777	2	0.0095668	36801	160511_QHF_FH_JSI11i_1	51.445	26.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15141	1436;1437;3263;1445	14357	91595	123761	123761			1	
FDQSVDPEIIAR	0	Unmodified	1388.6936	0.69359423	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	57.433	56.535	2	0.00015432	50179	160511_QHF_FH_JSI9i_1	83.397	75.176			1.2856	1.1849	44.755	2	0	Median	1.9557	1.6261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84511	0.86349	NaN	1	0	Median	112300000	48837000	63467000	44577000	13830000	30747000	0	0	0	0	0	0	67727000	35007000	32720000	15142	4261	14358	91596;91597	123762	123762			1	
FDREVDIGIPDATGR	0	Unmodified	1659.8216	0.82164829	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	56.291	56.209	2;3	0.00018878	49872	160511_QHF_FH_JSI11i_3	50.416	41.011			0.92719	0.86165	11.214	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8949	0.84373	2.9716	2	0	Median	1.0193	1.0211	NaN	1	0	Median	316510000	164440000	152060000	0	0	0	0	0	0	227460000	119160000	108300000	89052000	45287000	43765000	15143	1846	14359	91598;91599;91600	123763;123764;123765;123766;123767	123764			5	
FDRGYISPYFINTSK	1	Unmodified	1806.8941	0.89408495	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	5	5	3	2	68.838	65.498	2;3	1.1326E-13	55318	160511_QHF_FH_JSI10i_3	169.62	138.43			1.099	1.1841	44.276	13	5	Median	1.2424	1.0191	60.584	4	2	Median	1.1864	1.3249	2.8945	4	2	Linear	0.91434	0.88754	24.036	3	0	Plateau	0.7216	0.73981	66.518	2	1	Median	2425600000	1265600000	1160000000	857010000	425500000	431510000	796970000	445330000	351640000	587120000	285460000	301660000	184520000	109360000	75167000	15144	980	14360	91601;91602;91603;91604;91605;91606;91607;91608;91609;91610;91611;91612;91613;91614;91615	123768;123769;123770;123771;123772;123773;123774;123775;123776;123777;123778;123779;123780;123781;123782;123783;123784;123785;123786;123787;123788;123789;123790;123791;123792;123793;123794;123795	123780			28	
FDSASSSYYLDMHSLPHVINPVESR	0	Unmodified	2850.3283	0.32829337	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	84.442	84.327	3;4	7.2189E-10	73187	160511_QHF_FH_JSI12i_3	98.019	91.221			1.1963	1.3666	52.49	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57885	0.55451	NaN	1	1	Median	1.2335	1.3763	1.0037	2	2	Median	134010000	72024000	61989000	0	0	0	0	0	0	42168000	22950000	19218000	91845000	49074000	42771000	15145	4234	14361	91616;91617;91618	123796;123797;123798	123798			3	
FDSDAASPR	0	Unmodified	964.42502	0.42502394	1354;2788;1353	P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P03989;P30508;Q29960;P30510;Q07000;P30504;P30501;Q95604;Q29963;P10321;Q29865;P30499	HLA-B;HLA-C	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	13.978	12.115	2	5.8402E-06	10372	160511_QHF_FH_JSI12i_1	114.28	74.178			1.0307	0.92469	10.198	5	0	Linear	1.0307	0.84709	NaN	1	0	Median	0.78651	0.93568	NaN	1	0	Median	1.0975	1.0718	4.6348	2	0	Median	0.91062	0.9684	NaN	1	0	Median	1718500000	891120000	827380000	461340000	209740000	251600000	430570000	260470000	170100000	402300000	210930000	191370000	424280000	209980000	214300000	15146	1353;1354;2788	14362	91619;91620;91621;91622;91623	123799;123800;123801;123802;123803	123800			5	
FDSDAASQR	0	Unmodified	995.43084	0.4308376	788;967;1352	P10316;P01892;P01891;P30453;P30457;P30459;P16190;P10314;P18462	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	6.06	5	1				2	2			1	3	3	3	10.988	7.8081	2	9.1281E-07	7408	160511_QHF_FH_JSI12i_1	135.79	107.28			0.98256	1.0224	24.086	10	3	Median	1.4648	1.1892	NaN	1	1	Median	0.83225	0.99635	37.768	3	2	Plateau	1.287	1.2394	19.218	3	0	Plateau	1.0704	1.1281	13.769	3	0	Plateau	3347900000	1615500000	1732400000	635450000	276370000	359090000	1451100000	747690000	703430000	635420000	275590000	359830000	625890000	315830000	310060000	15147	967;788;1352	14363	91624;91625;91626;91627;91628;91629;91630;91631;91632;91633	123804;123805;123806;123807;123808;123809;123810;123811;123812;123813	123806			10	
FDSEPSAVALELPTR	0	Unmodified	1630.8203	0.82025131	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	72.264	71.646	2	2.3317E-06	65158	160511_QHF_FH_JSI12i_1	124.12	114.23			0.82562	0.80888	5.2186	3	2	Plateau	0.97476	0.80888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82562	0.77738	NaN	1	0	Median	0.84185	0.8621	NaN	1	1	Median	193580000	104730000	88848000	57741000	29546000	28194000	0	0	0	66652000	34285000	32367000	69187000	40900000	28287000	15148	1141	14364	91634;91635;91636	123814;123815;123816	123815			3	
FDSEYER	0	Unmodified	944.38758	0.3875758	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	15.72	15.219	2	0.011877	12604	160511_QHF_FH_JSI11i_1	70.268	60.083			0.93124	0.98894	6.8833	7	0	Median	1.0781	0.91194	11.463	2	0	Median	0.83233	1.0075	2.0504	2	0	Median	0.97053	0.95128	6.9499	2	0	Median	0.88474	0.95057	NaN	1	0	Median	1838800000	964370000	874410000	408970000	181980000	226990000	557620000	311380000	246240000	491170000	272260000	218910000	381020000	198750000	182270000	15149	1556	14365	91637;91638;91639;91640;91641;91642;91643	123817;123818;123819;123820;123821;123822	123817			6	
FDSKDEILLTLEK	2	Unmodified	1549.8239	0.8239397	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	75.345	74.712	3	0.0001969	65656	160511_QHF_FH_JSI11i_2	70.281	62.91			0.97353	0.96179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97353	0.96179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44288000	21507000	22781000	0	0	0	0	0	0	44288000	21507000	22781000	0	0	0	15150	2299	14366	91644;91645	123823;123824	123824			2	
FDSLTDLVEHYKK	2	Unmodified	1593.8039	0.80387296	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	68.543	68.246	3;4	6.4679E-05	58998	160511_QHF_FH_JSI12i_3	55.899	47.103			0.27271	0.27831	17.922	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27271	0.27831	17.922	2	1	Median	51927000	38426000	13501000	0	0	0	0	0	0	0	0	0	51927000	38426000	13501000	15151	2239	14367	91646;91647;91648	123825;123826;123827	123826			3	
FDSNNVVLIEDNGNPVGTR	0	Unmodified	2058.997	0.99704647	3091	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	67.989	67.261	2	4.1106E-67	61297	160511_QHF_FH_JSI12i_1	230.16	176.59			0.95058	0.99371	14.348	4	2	Median	1.0908	0.89717	22.376	2	2	Median	0.86124	1.0189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94287	0.96918	NaN	1	0	Median	141120000	72990000	68131000	53900000	26466000	27434000	52859000	26811000	26048000	0	0	0	34362000	19713000	14649000	15152	3091	14368	91649;91650;91651;91652	123828;123829;123830;123831;123832;123833	123828			6	
FDSPESHVGVAWR	0	Unmodified	1485.7001	0.70007659	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	49.112	48.354	2;3	8.6749E-16	41216	160511_QHF_FH_JSI12i_3	164.11	162.19			0.89424	0.93733	12.754	11	3	Median	1.1129	0.96503	15.878	2	1	Median	0.85683	1.0657	5.6998	2	1	Median	0.93058	0.92635	18.551	3	0	Median	0.84214	0.90823	10.344	4	1	Median	1692800000	873930000	818910000	138820000	55474000	83342000	203050000	118220000	84829000	710510000	370170000	340340000	640470000	330070000	310400000	15153	957	14369	91653;91654;91655;91656;91657;91658;91659;91660;91661;91662;91663	123834;123835;123836;123837;123838;123839;123840;123841;123842;123843;123844;123845;123846;123847;123848	123847			15	
FDSSLDRK	1	Unmodified	966.47706	0.47705951	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	5.1	1	12	7					5		7	7	5	6	15.361	13.067	2;3	7.7608E-05	10916	160511_QHF_FH_JSI11i_3	103.56	69.767			1.1382	1.0344	53.522	25	13	Median	1.1745	0.99369	65.388	7	4	Median	0.81215	0.96688	49.943	7	4	Median	1.2047	1.124	55.159	5	2	Median	1.307	1.3734	48.329	6	3	Median	12468000000	6176300000	6291900000	1956300000	1097200000	859100000	2545400000	1381900000	1163500000	4044100000	1868400000	2175700000	3922300000	1828800000	2093500000	15154	2193	14370	91664;91665;91666;91667;91668;91669;91670;91671;91672;91673;91674;91675;91676;91677;91678;91679;91680;91681;91682;91683;91684;91685;91686;91687;91688	123849;123850;123851;123852;123853;123854;123855;123856;123857;123858;123859;123860;123861;123862;123863;123864;123865;123866;123867;123868;123869;123870;123871;123872;123873;123874;123875;123876	123852			28	
FDSSYDRDSTFNVFVGK	1	Unmodified	1982.901	0.90102082	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.047	68.748	3	0.023853	59662	160511_QHF_FH_JSI12i_3	35.089	24.604			1.0726	1.0701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0726	1.0701	NaN	1	0	Median	157100000	69588000	87514000	0	0	0	0	0	0	0	0	0	157100000	69588000	87514000	15155	676	14371	91689	123877	123877			1	
FDTGNLCMVTGGANLGR	0	Unmodified	1781.8189	0.81888787	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.34	4	8	2					1		3	3	5	4	73.099	71.766	2;3	6.8417E-137	64033	160511_QHF_FH_JSI10i_2	282.62	274.11			0.95395	0.9594	18.843	15	1	Median	1.0571	0.90336	11.986	3	0	Median	0.73029	0.89356	9.6173	3	0	Plateau	0.78401	0.81227	17.648	5	1	Median	1.0946	1.1586	11.507	4	0	Median	2092900000	1086400000	1006500000	254390000	112770000	141620000	525420000	290420000	235000000	842500000	473360000	369140000	470600000	209890000	260710000	15156	2013	14372	91690;91691;91692;91693;91694;91695;91696;91697;91698;91699;91700;91701;91702;91703;91704	123878;123879;123880;123881;123882;123883;123884;123885;123886;123887;123888;123889;123890;123891;123892;123893;123894;123895;123896;123897;123898;123899;123900;123901	123899			22	
FDTGNLCMVTGGANLGR	0	Oxidation (M)	1797.8138	0.81380249	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	1	0		By MS/MS	By MS/MS		1.5	0.5	2	2									2	2		63.839	63.232	2	0.00077755	55177	160511_QHF_FH_JSI11i_2	62.924	56.82			0.53625	0.51603	19.166	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.53625	0.66153	NaN	1	1	Median	0.52602	0.51603	17.981	2	0	Median	NaN	NaN	NaN	0	0	Median	74717000	46592000	28125000	0	0	0	14443000	8751200	5692000	60274000	37841000	22433000	0	0	0	15157	2013	14372	91705;91706;91707;91708	123902;123903;123904;123905	123904		1668	4	
FDTGSGPAVLTSAVPVEPGQWHR	0	Unmodified	2407.1921	0.19205789	139	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	81.256	81.181	3	1.0015E-05	72590	160511_QHF_FH_JSI11i_3	61.616	53.303			1.2013	1.2487	10.669	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2944	1.1995	14.728	2	2	Median	1.2013	1.2487	NaN	1	0	Median	103730000	41963000	61768000	0	0	0	0	0	0	63104000	26708000	36396000	40628000	15255000	25372000	15158	139	14373	91709;91710;91711	123906;123907;123908;123909	123907			4	
FDTIYQILLK	1	Unmodified	1252.7067	0.7067251	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	94.889	90.674	2	4.9103E-14	87240	160511_QHF_FH_JSI11i_2	159.37	135.94			0.8539	0.86888	19.966	8	0	Median	0.8456	0.72658	4.551	2	0	Median	0.70467	0.84647	1.4487	2	0	Median	1.1222	1.1066	0.48452	2	0	Median	0.95615	1.0396	23.125	2	0	Median	696140000	352750000	343400000	117120000	62229000	54890000	202930000	115480000	87451000	226290000	95551000	130740000	149800000	79485000	70314000	15159	2525	14374	91712;91713;91714;91715;91716;91717;91718;91719	123910;123911;123912;123913;123914;123915;123916;123917;123918;123919;123920;123921	123914			12	
FDTPFLPK	1	Unmodified	963.50657	0.50656873	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	68.203	67.483	2	0.0014643	58074	160511_QHF_FH_JSI12i_2	89.142	78.269			1.0492	1.1358	11.706	6	0	Median	1.142	0.96399	NaN	1	0	Median	0.94773	1.1358	6.1218	2	0	Median	1.2751	1.2717	6.5166	2	0	Median	0.92461	1.0375	NaN	1	0	Median	361210000	176000000	185210000	53130000	29416000	23713000	99786000	49105000	50681000	117620000	51647000	65978000	90671000	45830000	44841000	15160	2561	14375	91720;91721;91722;91723;91724;91725	123922;123923;123924;123925;123926;123927;123928;123929	123923			8	
FDTPLETK	1	Unmodified	949.47566	0.47566253	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		39.661	39.314	2	0.0070881	35292	160511_QHF_FH_JSI11i_1	60.59	32.078			0.65756	0.70089	19.413	2	0	Median	NaN	NaN	NaN	0	0	Median	0.52522	0.61099	NaN	1	0	Median	0.82323	0.80402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95788000	55509000	40279000	0	0	0	41268000	23107000	18162000	54520000	32402000	22117000	0	0	0	15161	163	14376	91726;91727	123930	123930			1	
FDTPVDK	1	Unmodified	820.39668	0.39668393	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.728	24.566	2	0.031087	21513	160511_QHF_FH_JSI11i_1	51.787	30.241			0.81595	0.80057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81595	0.80057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41937000	24320000	17617000	0	0	0	0	0	0	41937000	24320000	17617000	0	0	0	15162	2148	14377	91728	123931	123931			1	
FDTQLFHTIGVEFLNK	1	Unmodified	1907.9781	0.97814893	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6.38		1	1						1		1	2		98.179	95.035	3	7.5296E-08	90270	160511_QHF_FH_JSI11i_3	149.97	139.5			0.83355	0.82703	31.133	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.1195	1.3517	NaN	1	1	Median	1.1066	1.0549	39.1	2	1	Median	NaN	NaN	NaN	0	0	Median	746710000	387590000	359120000	0	0	0	230260000	110960000	119300000	516460000	276630000	239820000	0	0	0	15163	1729	14378	91729;91730;91731	123932;123933;123934	123932			2	
FDTQYPYGEK	1	Unmodified	1246.5506	0.55061839	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.1	4	2				1	3			1	4	2	3	40.918	36.453	2	1.1068E-26	33199	160511_QHF_FH_JSI11i_1	196.88	133.31			0.87273	0.87822	22.96	10	3	Median	1.0926	0.87736	NaN	1	0	Median	0.68758	0.78598	9.4191	4	1	Median	1.0528	1.0206	5.9585	2	1	Median	1.0547	1.1217	41.875	3	1	Median	4544500000	2301500000	2243100000	929680000	433770000	495910000	1269900000	686730000	583210000	1100300000	575120000	525160000	1244600000	605850000	638790000	15164	1332	14379	91732;91733;91734;91735;91736;91737;91738;91739;91740;91741	123935;123936;123937;123938;123939;123940;123941;123942;123943;123944;123945;123946;123947;123948;123949;123950;123951;123952;123953;123954;123955;123956	123938			22	
FDTTPNELVQLNK	1	Unmodified	1517.7726	0.77257283	3538	Q8N573	OXR1	Oxidation resistance protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.371	64.74	2	0.0087121	58946	160511_QHF_FH_JSI12i_1	58.63	33.775			1.5311	1.5911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5311	1.5911	NaN	1	1	Median	19372000	6009700	13362000	0	0	0	0	0	0	0	0	0	19372000	6009700	13362000	15165	3538	14380	91742	123957	123957			1	
FDVNTSAVQVLIEHIGNLDR	0	Unmodified	2239.1597	0.15969512	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	3	2	99.92	96.507	3	1.6644E-122	49903	160513_QHF_FH_JSI9Kac_6	249.2	230.66			1.0578	1.0025	11.521	10	1	Median	1.1399	0.94381	6.5085	2	0	Median	1.0703	1.2677	12.914	3	0	Plateau	1.0591	1.0056	5.3849	3	1	Median	0.92585	0.95329	7.6047	2	0	Median	8624300000	4291300000	4333000000	936380000	471210000	465180000	2897500000	1413700000	1483800000	3529900000	1672500000	1857400000	1260500000	733830000	526620000	15166	2155	14381	91743;91744;91745;91746;91747;91748;91749;91750;91751;91752	123958;123959;123960;123961;123962;123963;123964;123965;123966;123967;123968	123965			11	
FDVPGDENAEMDAR	0	Unmodified	1564.6464	0.64638604	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				3	1	1	2	52.561	50.379	2	1.068E-21	44648	160511_QHF_FH_JSI9i_1	179.19	177.6			1.0374	1.032	6.6714	5	0	Median	1.2462	1.032	NaN	1	0	Median	0.94512	1.1019	NaN	1	0	Median	1.0374	1.0086	NaN	1	0	Median	0.97895	1.0473	11.657	2	0	Median	3079500000	1549200000	1530300000	518600000	243220000	275390000	1029600000	582270000	447350000	855370000	384370000	471000000	675910000	339340000	336570000	15167	1600	14382	91753;91754;91755;91756;91757;91758;91759	123969;123970;123971;123972;123973;123974;123975;123976;123977;123978;123979	123976			11	
FDVPGDENAEMDAR	0	Oxidation (M)	1580.6413	0.64130066	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					1	1	2	45.74	40.852	2	0.00065	36790	160511_QHF_FH_JSI10i_1	73.466	70.354			1.1133	1.1556	17.768	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2751	1.5366	NaN	1	0	Median	1.0957	1.0441	NaN	1	0	Median	1.0787	1.1556	10.779	2	1	Median	193590000	100660000	92930000	0	0	0	79291000	46192000	33099000	1848700	687490	1161200	112450000	53783000	58669000	15168	1600	14382	91760;91761;91762;91763	123980;123981;123982	123982		1270	3	
FDVQFPENNWINPDK	1	Unmodified	1861.8635	0.8635131	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	91.814	91.326	2;3	1.2758E-06	80229	160511_QHF_FH_JSI9i_2	156.36	141.68			0.88392	0.93266	22.769	6	4	Median	1.1238	0.97894	NaN	1	1	Median	0.72949	0.86582	8.9672	2	2	Median	0.91589	0.92027	NaN	1	0	Median	1.1249	1.2136	35.687	2	1	Median	443870000	262180000	181690000	57903000	25859000	32044000	213380000	147850000	65527000	80085000	37326000	42759000	92498000	51138000	41360000	15169	456	14383	91764;91765;91766;91767;91768;91769	123983;123984;123985;123986;123987;123988;123989;123990;123991	123988			9	
FDVQWIFVK	1	Unmodified	1180.6281	0.62808085	4548	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	91.438	83.113	2	7.7472E-05	48330	160513_QHF_FH_JSI10Kac_6	116.37	92.848			0.99129	0.941	17.845	4	0	Median	0.95809	0.81844	NaN	1	0	Median	0.68198	0.78189	NaN	1	0	Median	1.1475	1.0936	NaN	1	0	Median	1.0256	1.0819	NaN	1	0	Median	285490000	160500000	124980000	61796000	38005000	23790000	82993000	43236000	39757000	73384000	41095000	32289000	67317000	38168000	29149000	15170	4548	14384	91770;91771;91772;91773	123992;123993;123994	123994			3	
FDVSGYPTIKILK	2	Acetyl (K)	1521.8443	0.84428121	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		87.451	76.951	2	0.0016998	40370	160513_QHF_FH_JSI11Kac_5	79.741	54.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	941760	941760	0	0	0	0	0	0	0	941760	941760	0	0	0	0	15171	1034	14385	91774	123995	123995	861		1	
FDVSGYPTLK	1	Unmodified	1125.5706	0.57062555	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.764	57.839	2	7.9958E-08	51245	160511_QHF_FH_JSI10i_2	123.35	0			0.40314	0.42546	11.225	4	3	Median	0.44294	0.36968	NaN	1	1	Median	0.37993	0.4587	NaN	1	0	Median	0.3846	0.39462	NaN	1	1	Median	0.42257	0.46384	NaN	1	1	Median	3369200000	2365400000	1003900000	587030000	401810000	185220000	238390000	123820000	114570000	1301800000	951470000	350300000	1242100000	888270000	353790000	15172	1034	14386	91775;91776;91777;91778	123996;123997;123998;123999	123999			4	
FDVSSTSVFK	1	Unmodified	1115.5499	0.5498901	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.32	4	4	1				1	4		4	3	3	4	62.282	58.019	2;3	2.4172E-06	54289	160511_QHF_FH_JSI10i_1	111.46	88.384			0.82321	0.82988	92.22	14	3	Median	0.86498	0.71236	53.68	4	1	Median	0.63954	0.75751	19.567	3	1	Median	0.9197	0.94073	5.2695	3	0	Median	0.7961	0.82988	169.4	4	1	Median	1381600000	797580000	584040000	262340000	149610000	112730000	272360000	160550000	111810000	439930000	214580000	225350000	406990000	272840000	134150000	15173	4260	14387	91779;91780;91781;91782;91783;91784;91785;91786;91787;91788;91789;91790;91791;91792	124000;124001;124002;124003;124004;124005;124006;124007;124008;124009;124010;124011;124012;124013;124014;124015;124016;124017	124007			18	
FDVSSTSVFKQR	1	Acetyl (K)	1441.7201	0.72014333	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.436	62.706	2	0.0039998	33488	160513_QHF_FH_JSI11Kac_5	70.977	44.379			3.0457	2.9936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0457	2.9936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7395700	2289800	5106000	0	0	0	0	0	0	7395700	2289800	5106000	0	0	0	15174	4260	14388	91793	124018	124018	3091		1	
FDYAFDDSAPNEMVYR	0	Unmodified	1938.8094	0.80942862	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	74.917	74.564	2	6.7498E-07	67862	160511_QHF_FH_JSI11i_1	128.31	110.5			1.0607	1.0347	7.3551	3	1	Median	NaN	NaN	NaN	0	0	Median	0.87176	0.9688	NaN	1	1	Median	1.0607	1.0347	NaN	1	0	Median	1.1187	1.122	NaN	1	0	Median	74601000	41545000	33056000	0	0	0	18989000	12773000	6215700	28339000	12975000	15363000	27273000	15796000	11477000	15175	95	14389	91794;91795;91796;91797	124019;124020;124021;124022;124023;124024	124021			6	
FDYIFFTGSPR	0	Unmodified	1348.6452	0.64518747	1561	P43353	ALDH3B1	Aldehyde dehydrogenase family 3 member B1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		83.761	74.793	2	0.00027602	40932	160513_QHF_FH_JSI9Kac_6	91.855	73.075			1.4436	1.2844	87.011	2	2	Median	2.773	2.3764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75156	0.69424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115190000	49554000	65640000	54260000	15977000	38283000	0	0	0	60935000	33577000	27358000	0	0	0	15176	1561	14390	91798;91799	124025;124026	124026			2	
FDYKAHQR	1	Acetyl (K)	1105.5305	0.53049207	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		23.987	15.922	3	0.0011348	9605	160513_QHF_FH_JSI11Kac_6	82.426	77.886			0.62556	0.67477	153.25	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6828	1.9942	NaN	1	0	Median	0.23255	0.22831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27513000	18606000	8906400	0	0	0	7760100	3575900	4184200	19753000	15030000	4722200	0	0	0	15177	40	14391	91800;91801	124027;124028	124027	9		2	
FDYSGVGSSDGNSEESTLGK	1	Unmodified	2034.8654	0.86542318	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.97	49.293	2	2.0644E-184	44728	160511_QHF_FH_JSI12i_1	314.17	295.04			1.0496	1.0307	4.1609	4	0	Median	1.2012	0.99258	NaN	1	0	Median	0.86761	1.0098	NaN	1	0	Median	1.1114	1.0888	NaN	1	0	Median	0.99115	1.052	NaN	1	0	Median	685000000	343080000	341920000	168060000	76647000	91418000	137030000	80943000	56089000	172770000	88591000	84182000	207130000	96895000	110240000	15178	5002	14392	91802;91803;91804;91805	124029;124030;124031;124032;124033;124034;124035;124036;124037	124033			9	
FDYVAQQEQELDIK	1	Unmodified	1724.8257	0.82573061	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	65.631	65.021	2	1.145E-12	57712	160511_QHF_FH_JSI9i_1	117.79	102.42			0.95285	0.98399	13.138	4	3	Median	0.93658	0.77965	NaN	1	1	Median	0.84705	0.96615	NaN	1	0	Median	1.0934	1.0488	NaN	1	1	Median	0.9694	1.0022	NaN	1	1	Median	124590000	62306000	62283000	22802000	11768000	11034000	35288000	19770000	15518000	31434000	15065000	16369000	35066000	15704000	19362000	15179	1095	14393	91806;91807;91808;91809;91810	124038;124039;124040;124041;124042;124043	124043			6	
FEAAETLEEAAMR	0	Unmodified	1466.6711	0.67114423	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				66.692	65.782	2	0.0010099	57841	160511_QHF_FH_JSI9i_2	77.062	46.808			1.5249	1.3154	NaN	1	1	Median	1.5249	1.3154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58883000	22676000	36208000	58883000	22676000	36208000	0	0	0	0	0	0	0	0	0	15180	2258	14394	91811	124044	124044			1	
FEAFEHENK	1	Unmodified	1149.5091	0.50908792	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	2	4	4	3	21.462	19.265	2;3	6.1351E-05	15710	160511_QHF_FH_JSI11i_2	84.054	69.847			1.0193	1.0539	65.869	11	7	Median	0.83284	0.71441	54.987	2	2	Median	0.70217	0.85853	106.86	4	4	Median	1.0041	1.0406	18.927	3	1	Plateau	1.1665	1.2959	10.503	2	0	Median	1904000000	998600000	905400000	249120000	143040000	106090000	748730000	415100000	333630000	548040000	281940000	266090000	358110000	158520000	199590000	15181	5246	14395	91812;91813;91814;91815;91816;91817;91818;91819;91820;91821;91822;91823;91824	124045;124046;124047;124048;124049;124050;124051;124052;124053;124054;124055;124056;124057;124058	124051			14	
FEAGQFEPSETTAK	1	Unmodified	1540.7046	0.70455285	2905	Q5JTJ3	COA6	Cytochrome c oxidase assembly factor 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	4.52	5	6					2			3	4	3	3	46.813	44.04	2	8.7542E-10	40253	160511_QHF_FH_JSI12i_1	190.46	173.43			0.99488	1.0229	15.93	10	5	Median	1.0195	0.86441	8.227	2	0	Median	0.92209	1.086	6.953	3	2	Median	1.1606	1.1539	21.214	2	2	Median	0.89845	0.96074	17.649	3	1	Median	1599200000	789310000	809940000	312340000	136880000	175460000	420590000	237500000	183100000	480050000	240760000	239290000	386270000	174170000	212090000	15182	2905	14396	91825;91826;91827;91828;91829;91830;91831;91832;91833;91834;91835;91836;91837	124059;124060;124061;124062;124063;124064;124065;124066;124067;124068;124069;124070;124071;124072;124073;124074;124075;124076;124077;124078;124079;124080	124065			22	
FEAHPNDLYVEGLPENIPFR	0	Unmodified	2356.1488	0.14879609	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	89.493	89.033	3	9.571E-12	78518	160511_QHF_FH_JSI11i_2	107.45	99.063			0.90967	0.91691	45.826	6	3	Median	1.0748	0.93098	21.273	2	1	Median	0.73743	0.89369	NaN	1	1	Median	1.61	1.5728	78.971	2	1	Median	0.82641	0.93432	NaN	1	0	Median	616290000	305340000	310950000	116850000	51062000	65784000	121270000	72116000	49151000	225140000	114610000	110530000	153030000	67554000	85480000	15183	2087	14397	91838;91839;91840;91841;91842;91843	124081;124082;124083;124084;124085;124086;124087;124088;124089;124090	124088			10	
FEALAAHDALVELSGAMNTTACSLMK	1	Unmodified	2750.3078	0.30775762	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	101.6	101.48	3	1.1677E-35	89226	160511_QHF_FH_JSI11i_2	156.88	150.08			0.71072	0.74931	36.619	3	0	Median	NaN	NaN	NaN	0	0	Median	0.61467	0.74931	NaN	1	0	Median	0.71072	0.72929	NaN	1	0	Median	1.232	1.3933	NaN	1	0	Median	1007100000	568670000	438470000	0	0	0	193520000	121370000	72153000	485980000	287250000	198730000	327630000	160050000	167580000	15184	887	14398	91844;91845;91846	124091;124092	124091			2	
FEAPLFNAR	0	Unmodified	1063.5451	0.5450795	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	60.95	60.297	2	0.00078736	51951	160511_QHF_FH_JSI12i_3	74.127	67.303			1.0578	0.98604	21.677	6	0	Median	1.0451	0.89559	NaN	1	0	Median	0.73877	0.89869	NaN	1	0	Median	1.2137	1.1829	12.628	2	0	Median	1.0347	1.0909	37.169	2	0	Median	756090000	378100000	377990000	121020000	49004000	72014000	139580000	73257000	66327000	277260000	144300000	132960000	218230000	111540000	106690000	15185	1306	14399	91847;91848;91849;91850;91851;91852	124093;124094;124095;124096;124097;124098;124099;124100;124101;124102	124101			10	
FEDEDSDDVPRK	1	Unmodified	1450.6212	0.62121715	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		18.237	18.117	2	0.00035116	15432	160511_QHF_FH_JSI11i_1	79.974	68.823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15186	1679	14400	91853	124103	124103			1	
FEDEEAQAVYWHSSAHIMGEAMER	0	Unmodified	2822.2065	0.20646368	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	1	3	74.946	69.133	3;4	4.2373E-78	37382	160513_QHF_FH_JSI10Kac_6	211.3	203.4			1.0759	1.1021	11.096	7	0	Median	1.2502	1.0829	NaN	1	0	Median	1.0005	1.188	10.613	2	0	Median	1.1648	1.154	NaN	1	0	Median	0.84638	0.89484	12.642	3	0	Plateau	440980000	216220000	224750000	46794000	18970000	27824000	209110000	105120000	103990000	34016000	18503000	15514000	151060000	73628000	77430000	15187	1282	14401	91854;91855;91856;91857;91858;91859;91860	124104;124105;124106;124107;124108;124109;124110	124110			4	
FEDENFHYK	1	Unmodified	1227.5197	0.51965261	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.912	29.994	3	0.019938	26322	160511_QHF_FH_JSI10i_2	28.797	24.624			1.1487	1.1482	17.039	4	0	Median	1.2747	1.1444	NaN	1	0	Median	0.71568	0.88107	NaN	1	0	Median	1.1403	1.152	NaN	1	0	Median	1.1573	1.3255	NaN	1	0	Median	303490000	147670000	155820000	46774000	20640000	26134000	77354000	40162000	37192000	112080000	56490000	55589000	67286000	30382000	36904000	15188	2276	14402	91861;91862;91863;91864	124111;124112;124113;124114;124115;124116	124116			6	
FEDENFILK	1	Unmodified	1153.5655	0.56554017	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.38	5	5	3			1	4	3	2	6	6	5	6	63.204	58.438	2	5.7893E-12	55936	160511_QHF_FH_JSI12i_1	167.33	157.34			1.0617	1.0503	57.169	22	4	Median	1.3114	1.1378	103.91	6	2	Median	0.91175	1.0139	23.222	6	0	Median	0.95552	0.96504	17.034	5	0	Median	1.1202	1.2395	49.107	5	2	Median	104980000000	43000000000	61981000000	23142000000	8531600000	14610000000	23954000000	10215000000	13739000000	29792000000	11203000000	18589000000	28093000000	13051000000	15042000000	15189	2040	14403	91865;91866;91867;91868;91869;91870;91871;91872;91873;91874;91875;91876;91877;91878;91879;91880;91881;91882;91883;91884;91885;91886;91887	124117;124118;124119;124120;124121;124122;124123;124124;124125;124126;124127;124128;124129;124130;124131;124132;124133;124134;124135;124136;124137;124138;124139;124140;124141;124142;124143;124144;124145;124146;124147;124148;124149;124150;124151;124152;124153;124154;124155;124156;124157;124158;124159;124160;124161;124162;124163;124164;124165;124166;124167;124168;124169;124170;124171;124172	124132			56	
FEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK	2	Acetyl (K)	3967.8873	0.88730837	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		93.48	84.097	3;4	4.2091E-186	47414	160513_QHF_FH_JSI11Kac_6	321.17	282.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233330000	233330000	0	0	0	0	0	0	0	233330000	233330000	0	0	0	0	15190	2040	14404	91888;91889	124173;124174	124174	2096		2	
FEDHEGLPTVVK	1	Unmodified	1369.6878	0.68778057	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	44.419	43.56	2;3	0.00014471	37466	160511_QHF_FH_JSI11i_2	100.48	85.81			1.3791	1.5442	59.877	4	4	Median	NaN	NaN	NaN	0	0	Median	1.5505	1.8632	22.924	2	2	Median	0.8847	0.90914	71.283	2	2	Median	NaN	NaN	NaN	0	0	Median	157360000	65617000	91740000	0	0	0	101760000	42032000	59730000	44318000	23585000	20733000	11278000	0	11278000	15191	1665	14405	91890;91891;91892;91893;91894;91895	124175;124176;124177;124178;124179;124180	124178			6	
FEDKTVAYTEQK	2	Acetyl (K)	1499.7144	0.71438925	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		48.716	39.293	2	0.047803	21751	160513_QHF_FH_JSI11Kac_3	49.5	40.496			0.79375	0.77689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79375	0.77689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5034000	3798100	1235900	0	0	0	0	0	0	5034000	3798100	1235900	0	0	0	15192	1344	14406	91896	124181	124181	1271		1	
FEDPKFEVIEK	2	Unmodified	1379.6973	0.69728262	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	53.533	52.586	2;3	0.01994	45046	160511_QHF_FH_JSI12i_2	41.401	41.401			1.0036	1.017	64.038	3	3	Median	NaN	NaN	NaN	0	0	Median	0.45425	0.55049	NaN	1	1	Median	1.0036	1.017	NaN	1	1	Median	1.8403	1.9807	NaN	1	1	Median	613440000	332060000	281390000	0	0	0	197790000	125820000	71963000	177470000	89489000	87981000	238190000	116740000	121440000	15193	1149	14407	91897;91898;91899	124182;124183;124184	124182			3	
FEDPKFEVIEKPQA	2	Unmodified	1675.8457	0.84573777	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	3	1	58.289	57.483	2;3	0.0005382	49289	160511_QHF_FH_JSI12i_2	73.386	68.585			0.77948	0.92948	57.81	4	2	Median	NaN	NaN	NaN	0	0	Median	0.67151	0.8337	NaN	1	0	Median	0.91912	0.92955	98.942	2	2	Median	0.9048	1.0363	NaN	1	0	Median	1120500000	632700000	487820000	0	0	0	211790000	118630000	93164000	607630000	336930000	270700000	301100000	177140000	123960000	15194	1149	14408	91900;91901;91902;91903;91904	124185;124186;124187;124188;124189;124190	124185			6	
FEDPRDAEDAIYGR	0	Unmodified	1652.7431	0.74306362	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	1	4	2	51.107	50.133	2;3	0.00020733	43948	160511_QHF_FH_JSI9i_2	53.377	49.061			0.96836	1.0306	7.0461	6	0	Median	1.174	0.99918	NaN	1	0	Median	0.87189	1.0616	NaN	1	0	Median	1.0444	1.0498	13.065	2	0	Median	0.94071	1.0534	7.298	2	0	Median	472560000	249810000	222750000	82430000	35557000	46873000	84997000	46831000	38166000	176410000	94560000	81845000	128720000	72859000	55866000	15195	2376	14409	91905;91906;91907;91908;91909;91910;91911;91912	124191;124192;124193;124194;124195;124196;124197;124198;124199;124200	124193			10	
FEDRFDK	1	Unmodified	955.43995	0.43994572	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	18.025	17.547	3	0.0053566	14295	160511_QHF_FH_JSI11i_2	63.48	26.459			0.80036	0.91841	60.935	6	5	Median	1.1818	1.0157	NaN	1	1	Median	0.85434	1.0363	NaN	1	1	Median	0.53945	0.54495	NaN	1	1	Median	0.74979	0.83041	86.005	3	2	Median	825210000	402140000	423070000	86154000	30684000	55470000	141300000	75818000	65485000	170600000	87614000	82981000	427160000	208030000	219130000	15196	4874	14410	91913;91914;91915;91916;91917;91918;91919;91920	124201;124202;124203;124204;124205;124206;124207;124208	124203			8	
FEDRSPAAECLSEK	1	Unmodified	1637.7355	0.7355354	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.283	28.632	3	0.00079954	24036	160511_QHF_FH_JSI12i_2	58.831	45.851			0.49325	0.55011	72.671	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7397	0.91964	NaN	1	1	Median	0.32891	0.32906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73406000	58484000	14922000	0	0	0	27857000	20602000	7255400	45549000	37882000	7666400	0	0	0	15197	2328	14411	91921;91922;91923;91924	124209;124210;124211;124212	124209			4	
FEDSPSYVK	1	Unmodified	1070.492	0.49204087	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	27.185	26.636	2	0.00019079	23363	160511_QHF_FH_JSI11i_1	91.318	51.215			1.3477	1.3663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3477	1.3663	NaN	1	0	Median	178150000	106180000	71971000	0	0	0	0	0	0	0	0	0	178150000	106180000	71971000	15198	403	14412	91925;91926	124213;124214;124215	124213			3	
FEDVGGNDMTLK	1	Unmodified	1324.5969	0.59691665	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.574	45.898	2	6.616E-05	41341	160511_QHF_FH_JSI11i_1	96.015	84.864			0.91706	0.69318	27.555	4	1	Linear	1.3133	1.0849	NaN	1	1	Median	0.48388	0.57703	NaN	1	0	Median	0.93197	0.92025	NaN	1	0	Median	0.90238	0.95049	NaN	1	0	Median	654970000	346250000	308720000	154060000	76331000	77729000	183750000	122080000	61661000	176820000	82743000	94074000	140350000	65093000	75259000	15199	285	14413	91927;91928;91929;91930;91931	124216;124217;124218;124219;124220;124221;124222	124216			7	
FEDVVNQSSPK	1	Unmodified	1248.5986	0.59863121	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1					1	3	2	28.734	26.952	2	4.9135E-06	24209	160511_QHF_FH_JSI12i_1	115.57	100.9			1.5169	1.6069	83.436	6	6	Median	NaN	NaN	NaN	0	0	Median	1.3851	1.6015	NaN	1	1	Median	1.6654	1.6123	78.718	3	3	Median	0.66203	0.68541	128.29	2	2	Median	502320000	290130000	212180000	0	0	0	86320000	45205000	41114000	199600000	103510000	96094000	216390000	141420000	74977000	15200	2163	14414	91932;91933;91934;91935;91936;91937	124223;124224;124225;124226;124227;124228	124226			6	
FEDYLNAESR	0	Unmodified	1242.5517	0.55168102	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	41.304	40.663	2	0.00026217	37027	160511_QHF_FH_JSI12i_1	79.986	67.749			1.0677	1.0091	14.912	6	1	Median	1.029	0.86607	NaN	1	0	Median	0.72693	0.86094	12.158	2	1	Median	1.1227	1.1046	2.4818	2	0	Median	1.1079	1.122	NaN	1	0	Median	584000000	318650000	265350000	40460000	22564000	17896000	201310000	117180000	84125000	228390000	116950000	111440000	113840000	61953000	51885000	15201	2725	14415	91938;91939;91940;91941;91942;91943	124229;124230;124231;124232;124233;124234	124231			6	
FEEAENSLLHLK	1	Unmodified	1428.7249	0.72489436	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.581	55.225	3	0.0011851	47268	160511_QHF_FH_JSI12i_2	62.528	58.059			2.0383	2.27	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0383	2.27	NaN	1	1	Median	87802000	44778000	43023000	0	0	0	0	0	0	0	0	0	87802000	44778000	43023000	15202	2639	14416	91944	124235	124235			1	
FEEAENSLLHLKTVK	2	Acetyl (K)	1798.9465	0.94651445	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		75.848	65.852	3	0.00040957	35805	160513_QHF_FH_JSI11Kac_6	84.94	52.207			1.4571	1.4281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4571	1.4281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27927000	22254000	5673200	0	0	0	0	0	0	27927000	22254000	5673200	0	0	0	15203	2639	14417	91945;91946	124236;124237	124236	2601		2	
FEEAPDYMYLR	0	Unmodified	1432.6333	0.63330216	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	63.193	62.451	2	0.00029981	56766	160511_QHF_FH_JSI11i_1	76.465	73.526			0.95275	0.94941	19.404	9	2	Median	1.107	0.93337	25.863	2	0	Median	0.80664	0.96704	34.732	2	0	Median	0.77614	0.75874	15.892	3	2	Median	0.92225	0.99262	6.2949	2	0	Median	368880000	201280000	167610000	53444000	27529000	25915000	85437000	52172000	33265000	160340000	86649000	73690000	69663000	34928000	34735000	15204	1633	14418	91947;91948;91949;91950;91951;91952;91953;91954;91955	124238;124239;124240;124241;124242;124243;124244;124245;124246;124247;124248	124238			11	
FEEAQSILK	1	Unmodified	1063.555	0.55497548	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				43.095	42.044	2	0.017274	36754	160511_QHF_FH_JSI9i_2	52.716	28.744			0.79505	0.67297	NaN	1	1	Median	0.79505	0.67297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29451000	15719000	13733000	29451000	15719000	13733000	0	0	0	0	0	0	0	0	0	15205	1685	14419	91956	124249	124249			1	
FEEAVEK	1	Unmodified	850.40725	0.40724861	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		15.514	15.052	2	0.012767	12461	160511_QHF_FH_JSI11i_1	72.789	23.199			0.62881	0.51189	29.829	3	2	Median	0.62881	0.51189	NaN	1	1	Median	0.71861	0.85504	NaN	1	0	Median	0.52041	0.50825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1041400000	554580000	486800000	272450000	138020000	134430000	425390000	231820000	193570000	343540000	184740000	158800000	0	0	0	15206	1805	14420	91957;91958;91959	124250;124251;124252	124250			3	
FEEDVEEETER	0	Unmodified	1410.5787	0.57868363	820	P04920;P48751	SLC4A2;SLC4A3	Anion exchange protein 2;Anion exchange protein 3	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.409	28.491	2	5.4889E-05	25493	160511_QHF_FH_JSI12i_1	94.692	92.294			1.0208	0.93595	15.537	2	0	Median	1.2565	1.0446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82933	0.83857	NaN	1	0	Median	51029000	24972000	26056000	22512000	10391000	12122000	0	0	0	0	0	0	28516000	14582000	13935000	15207	820	14421	91960;91961	124253;124254	124253			2	
FEEFLQR	0	Unmodified	967.47633	0.47633123	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	43.552	42.171	2	0.006401	36183	160511_QHF_FH_JSI11i_2	79.307	50.735			0.79502	0.88497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79502	0.88497	NaN	1	1	Median	73377000	43316000	30062000	0	0	0	0	0	0	0	0	0	73377000	43316000	30062000	15208	2185	14422	91962;91963;91964;91965	124255;124256;124257;124258	124258			4	
FEEFQNTLSK	1	Unmodified	1241.5928	0.59281755	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	44.905	44	2	0.00014788	37585	160511_QHF_FH_JSI12i_2	83.499	71.651			0.66097	0.77299	18.709	2	1	Median	NaN	NaN	NaN	0	0	Median	0.56811	0.67721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.769	0.88232	NaN	1	0	Median	191590000	117280000	74311000	0	0	0	124460000	69308000	55149000	0	0	0	67131000	47969000	19162000	15209	1493	14423	91966;91967	124259;124260	124259			2	
FEEFQTTMAK	1	Unmodified	1230.5591	0.55907458	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	44.19	42.971	2	0.035239	37562	160511_QHF_FH_JSI9i_2	55.549	47.329			1.5738	1.5628	16.283	2	0	Median	1.6003	1.3928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5476	1.7535	NaN	1	0	Median	83959000	35036000	48923000	31796000	14476000	17320000	0	0	0	0	0	0	52163000	20560000	31603000	15210	5011	14424	91968;91969	124261	124261			0	
FEEHVQSVDIAAFNK	1	Unmodified	1732.842	0.84204938	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.426	1	9	1							4	2	3	2	60.167	59.234	2;3	2.8615E-21	51968	160511_QHF_FH_JSI9i_2	176.29	151.94			0.90257	0.92789	22.225	11	3	Median	1.2471	1.0693	35.689	4	3	Median	0.7313	0.89886	6.3358	2	0	Median	0.9082	0.91096	3.8569	3	0	Plateau	0.8909	0.9827	2.1022	2	0	Median	1183400000	644900000	538480000	342120000	160200000	181920000	257880000	147030000	110840000	367560000	218010000	149550000	215830000	119650000	96173000	15211	1327	14425	91970;91971;91972;91973;91974;91975;91976;91977;91978;91979;91980	124262;124263;124264;124265;124266;124267;124268;124269;124270;124271;124272;124273;124274;124275;124276;124277	124266			16	
FEEHVQSVDIAAFNKI	1	Unmodified	1845.9261	0.92611336	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	75.035	74.232	2;3	1.253E-05	65308	160511_QHF_FH_JSI11i_2	94.461	82.175			0.68607	0.67214	28.755	6	4	Median	0.46459	0.40532	NaN	1	1	Median	0.58878	0.72865	32.859	2	2	Median	0.68607	0.67214	7.4207	2	1	Median	0.72718	0.81081	NaN	1	0	Median	534090000	319190000	214900000	104860000	68292000	36566000	112120000	70417000	41701000	193280000	107720000	85558000	123830000	72764000	51070000	15212	1327	14426	91981;91982;91983;91984;91985;91986	124278;124279;124280;124281;124282;124283;124284;124285	124282			8	
FEELCSDLFR	0	Unmodified	1314.5914	0.59143734	954;1108	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.83	6.49	3	1						2			1	3	2	72.713	68.748	2	0.00047468	60013	160511_QHF_FH_JSI12i_2	94.85	87.63			1.0047	1.0677	30.135	6	2	Median	NaN	NaN	NaN	0	0	Median	0.92635	1.0538	NaN	1	0	Median	0.83861	0.81084	36.257	3	2	Median	1.1669	1.2209	17.097	2	0	Median	168410000	81897000	86516000	0	0	0	24292000	13216000	11076000	53760000	29466000	24294000	90361000	39215000	51146000	15213	954;1108	14427	91987;91988;91989;91990;91991;91992	124286;124287;124288;124289;124290;124291;124292	124288			6	
FEELLLQASK	1	Unmodified	1176.639	0.63903946	5069	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.005	60.493	2	0.013649	52415	160511_QHF_FH_JSI11i_2	53.597	34.326			4.5465	4.4717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5465	4.4717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42177000	10996000	31182000	0	0	0	0	0	0	42177000	10996000	31182000	0	0	0	15214	5069	14428	91993	124293	124293			1	
FEELNADLFR	0	Unmodified	1252.6088	0.60880197	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.759	4	5	3							3	3	4	2	71.967	71.188	2	2.6215E-19	62823	160511_QHF_FH_JSI9i_2	179.8	152.55			0.88385	0.90668	12.323	11	0	Median	1.3158	1.117	14.414	3	0	Plateau	0.70764	0.87375	12.461	3	0	Median	0.94452	0.96836	14.236	3	0	Median	0.8702	0.93556	9.0045	2	0	Median	3369800000	1782500000	1587300000	615740000	272040000	343700000	805260000	498970000	306290000	1091300000	574020000	517230000	857560000	437490000	420070000	15215	985;1827	14429	91994;91995;91996;91997;91998;91999;92000;92001;92002;92003;92004;92005	124294;124295;124296;124297;124298;124299;124300;124301;124302;124303;124304;124305;124306;124307;124308;124309;124310;124311;124312;124313	124308			20	
FEELNMDLFR	0	Unmodified	1312.6122	0.61217279	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	3	3	3	84.908	84.389	2	8.7029E-44	72923	160511_QHF_FH_JSI12i_2	214.93	201.89			1.0786	1.0476	10.695	10	0	Median	1.1277	0.93312	NaN	1	0	Median	0.83519	1.0127	4.233	3	0	Median	1.0992	1.1199	7.1817	3	0	Median	1.0633	1.1899	11.343	3	0	Median	3609200000	1648400000	1960800000	648760000	231010000	417750000	774120000	395850000	378280000	1133900000	510460000	623430000	1052400000	511110000	541330000	15216	982	14430	92006;92007;92008;92009;92010;92011;92012;92013;92014;92015	124314;124315;124316;124317;124318;124319;124320;124321;124322;124323;124324;124325;124326;124327;124328;124329;124330;124331;124332;124333;124334;124335;124336	124319			21	
FEELNMDLFR	0	Oxidation (M)	1328.6071	0.60708741	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.42	1	3	1				1	4		2	3	3	2	71.397	65.697	2	9.406E-05	58053	160511_QHF_FH_JSI11i_2	90.629	84.848			0.90737	1.0514	25.256	10	0	Median	0.85819	0.73166	12.041	2	0	Median	0.89749	1.0882	8.2781	3	0	Median	0.729	0.73122	36.527	3	0	Plateau	1.023	1.1216	18.088	2	0	Median	481670000	245040000	236630000	83121000	40365000	42756000	145770000	72333000	73439000	239600000	124890000	114710000	13180000	7451900	5728600	15217	982	14430	92016;92017;92018;92019;92020;92021;92022;92023;92024;92025	124337;124338;124339;124340;124341;124342;124343;124344;124345;124346;124347;124348;124349;124350;124351	124344		556	15	
FEEMIQQIK	1	Oxidation (M)	1180.5798	0.57981002	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		37.199	36.932	2	0.060962	33186	160511_QHF_FH_JSI11i_1	55.531	38.991			1.0583	0.98567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0583	0.98567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67697000	35683000	32013000	0	0	0	0	0	0	67697000	35683000	32013000	0	0	0	15218	1630	14431	92026	124352	124352		1302	1	
FEEMIQQIK	1	Unmodified	1164.5849	0.5848954	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.22	5	8					1			3	4	4	3	50.532	49.003	2	2.2144E-09	41868	160511_QHF_FH_JSI12i_2	167.33	151.13			4.0824	3.8292	205.57	14	14	Median	4.3485	3.6067	241.25	3	3	Median	0.93153	1.102	219.92	4	4	Median	1.55	1.5016	232.2	4	4	Median	3.8325	4.0654	246.74	3	3	Median	3206200000	1509900000	1696300000	595440000	239420000	356020000	859910000	443400000	416500000	1278200000	557850000	720360000	472660000	269230000	203430000	15219	1630	14431	92027;92028;92029;92030;92031;92032;92033;92034;92035;92036;92037;92038;92039;92040	124353;124354;124355;124356;124357;124358;124359;124360;124361;124362;124363;124364;124365;124366	124355			14	
FEEPAPLSYDSRPR	0	Unmodified	1662.8002	0.80018457	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1			By MS/MS	By matching	2.5	0.5		1	1									1	1	45.648	45.275	3	0.046634	39017	160511_QHF_FH_JSI11i_2	55.782	43.637			1.0527	1.0392	20.354	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2009	1.2001	NaN	1	0	Median	0.92271	0.89989	NaN	1	0	Median	112490000	52913000	59575000	0	0	0	0	0	0	67268000	30687000	36580000	45220000	22226000	22994000	15220	2253	14432	92041;92042	124367	124367			0	
FEEPDSASVK	1	Unmodified	1107.5084	0.50841922	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		24.256	24.028	2	0.041969	21094	160511_QHF_FH_JSI10i_1	44.863	31.216			1.2992	1.3628	66.142	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75038	0.85369	NaN	1	1	Median	2.2494	2.1754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87509000	29584000	57925000	0	0	0	26233000	13770000	12464000	61276000	15814000	45461000	0	0	0	15221	3580	14433	92043;92044	124368;124369	124369			2	
FEEQGASDLAK	1	Unmodified	1193.5564	0.55643205	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	26.953	26.247	2	3.7377E-05	23364	160511_QHF_FH_JSI12i_1	97.597	70.904			1.3467	1.0981	69.358	3	1	Median	1.3467	1.0981	NaN	1	0	Median	2.771	3.2272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86478	0.88393	NaN	1	0	Median	175720000	72926000	102800000	67960000	21452000	46508000	41193000	20487000	20707000	0	0	0	66571000	30987000	35584000	15222	3252	14434	92045;92046;92047	124370;124371;124372	124370			3	
FEEQGDFESEK	1	Unmodified	1343.5517	0.5517406	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	28.577	27.994	2	0.00019404	25043	160511_QHF_FH_JSI12i_1	91.855	72.584			0.55094	0.64051	62.376	5	5	Median	0.36145	0.28833	NaN	1	1	Median	0.55018	0.64051	NaN	1	1	Median	0.55094	0.52852	NaN	1	1	Median	1.1934	1.2099	29.849	2	2	Median	149260000	91967000	57290000	25287000	16720000	8566600	39594000	26338000	13257000	31303000	21235000	10067000	53074000	27674000	25400000	15223	4560	14435	92048;92049;92050;92051;92052	124373;124374;124375;124376;124377	124375			5	
FEESMSEK	1	Unmodified	985.40626	0.40626233	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	16.49	15.905	2	0.015282	13540	160511_QHF_FH_JSI12i_1	50.607	15.799			0.99589	1.0255	22.867	3	0	Median	1.5372	1.2569	NaN	1	0	Median	0.66711	0.79626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99589	1.0255	NaN	1	0	Median	367840000	173860000	193980000	137640000	53128000	84514000	131240000	75653000	55582000	0	0	0	98963000	45083000	53880000	15224	3903	14436	92053;92054;92055	124378	124378			1	
FEEVEEEPEVIPGPPSESPGMLTK	1	Unmodified	2626.236	0.23601569	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.215	80.057	3	0.0023619	72592	160511_QHF_FH_JSI10i_1	36.079	32.202			0.85886	0.9996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85886	0.9996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39796000	14241000	25555000	0	0	0	39796000	14241000	25555000	0	0	0	0	0	0	15225	327	14437	92056	124379	124379			1	
FEEYGPVIECDIVK	1	Unmodified	1696.8018	0.80182405	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS				1	0	1									1				73.165	72.234	2	0.015473	64287	160511_QHF_FH_JSI9i_1	53.08	38.069			0.71492	0.59619	NaN	1	1	Median	0.71492	0.59619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23336000	9707400	13629000	23336000	9707400	13629000	0	0	0	0	0	0	0	0	0	15226	4498;4343	14438	92057	124380	124380			1	
FEFLGINR	0	Unmodified	994.52362	0.52361577	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	69.75	69.385	2	0.0031906	61787	160511_QHF_FH_JSI11i_3	74.415	43.126			1.1918	1.156	25.371	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.61835	0.74374	NaN	1	1	Median	1.2265	1.1398	NaN	1	0	Median	1.1918	1.1675	NaN	1	0	Median	108650000	55639000	53008000	0	0	0	18350000	10609000	7740700	44858000	22391000	22467000	45439000	22639000	22800000	15227	3523	14439	92058;92059;92060	124381;124382;124383;124384	124382			4	
FEFNQSLGQPEK	1	Unmodified	1422.6779	0.67794416	4229	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.132	53.614	2	0.03549	46346	160511_QHF_FH_JSI11i_2	46.73	31.464			0.92892	0.87641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92892	0.87641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16146000	10073000	6072900	0	0	0	0	0	0	16146000	10073000	6072900	0	0	0	15228	4229	14440	92061	124385	124385			1	
FEFVPSPGNHFIWYR	0	Unmodified	1894.9155	0.91548909	5498	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	84.668	76.219	3	0.00012851	43219	160513_QHF_FH_JSI10Kac_6	81.632	63.493			1.1932	1.3368	16.558	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1834	1.3938	NaN	1	0	Median	1.6264	1.5301	NaN	1	1	Median	1.0821	1.1536	14.943	2	2	Median	446310000	218420000	227890000	0	0	0	169990000	80356000	89634000	78694000	32246000	46448000	197620000	105820000	91808000	15229	5498	14441	92062;92063;92064;92065	124386;124387;124388;124389	124389			4	
FEGAIYR	0	Unmodified	854.42865	0.42865276	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	27.88	27.053	2	0.013007	22818	160511_QHF_FH_JSI11i_2	68.485	41.689			0.96472	1.0316	10.341	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93956	0.95882	NaN	1	0	Median	0.99055	1.1098	NaN	1	0	Median	319660000	167040000	152620000	0	0	0	0	0	0	229210000	125020000	104200000	90443000	42024000	48419000	15230	1205	14442	92066;92067	124390	124390			1	
FEGAIYRK	1	Unmodified	982.52362	0.52361577	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							4	2	1		20.103	19.199	2;3	0.0020731	15309	160511_QHF_FH_JSI9i_3	64.265	45.17			0.46446	0.57437	91.02	7	6	Median	1.4226	1.2003	96.573	4	3	Median	0.3458	0.41607	45.596	2	2	Median	0.2356	0.21892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1169800000	675050000	494760000	584840000	263010000	321840000	361810000	250040000	111770000	223160000	162000000	61159000	0	0	0	15231	1205	14443	92068;92069;92070;92071;92072;92073;92074	124391;124392;124393;124394;124395;124396;124397;124398	124394			8	
FEGEPATHTQPGVQLQSNTYDLQESNVR	0	Unmodified	3144.4748	0.47483427	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.894	2	1	2							1	1	2	1	57.054	56.64	3	3.3494E-83	49643	160511_QHF_FH_JSI9i_2	235.68	229.38			0.93932	0.79893	36.163	5	2	Median	0.93932	0.79893	NaN	1	0	Median	0.50397	0.57584	NaN	1	1	Median	0.80251	0.76655	55.553	2	1	Median	1.0988	1.1052	NaN	1	0	Median	588480000	288200000	300280000	142440000	62774000	79665000	118420000	69780000	48643000	206540000	101680000	104860000	121080000	53965000	67116000	15232	2498	14444	92075;92076;92077;92078;92079	124399;124400;124401;124402;124403;124404;124405;124406	124404			8	
FEGGDRDLEHLSK	1	Unmodified	1501.7161	0.71612058	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							2	2	6	5	29.396	28.982	2;3;4	0.00013017	24647	160511_QHF_FH_JSI11i_3	73.386	64.336			0.90149	0.93467	40.12	15	5	Median	1.1506	0.97998	3.416	2	0	Median	0.71999	0.87801	15.355	2	0	Median	1.026	0.958	59.341	6	3	Median	0.71275	0.77573	28.818	5	2	Median	3054100000	1567300000	1486800000	314010000	162500000	151510000	415770000	257810000	157950000	1128500000	535190000	593290000	1195800000	611770000	584040000	15233	1034	14445	92080;92081;92082;92083;92084;92085;92086;92087;92088;92089;92090;92091;92092;92093;92094	124407;124408;124409;124410;124411;124412;124413;124414;124415;124416;124417;124418;124419;124420;124421;124422;124423;124424;124425;124426;124427;124428;124429	124408			23	
FEGGVVIAADMLGSYGSLAR	0	Unmodified	2012.0037	0.0037117545	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	101.46	101.35	2	1.0848E-82	89183	160511_QHF_FH_JSI9i_2	244.57	222.37			0.91609	0.9795	17.75	4	0	Median	1.2719	1.0818	NaN	1	0	Median	0.59009	0.72944	NaN	1	0	Median	1.0205	1.0405	NaN	1	0	Median	0.82238	0.92208	NaN	1	0	Median	1043900000	568670000	475240000	142600000	73459000	69143000	181290000	117610000	63685000	437790000	223540000	214260000	282220000	154070000	128150000	15234	1301	14446	92095;92096;92097;92098	124430	124430			1	
FEGQFSINK	1	Unmodified	1068.524	0.52400971	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	42.741	41.922	2	3.951E-08	35828	160511_QHF_FH_JSI12i_2	146.58	95.618			1.2065	1.2309	26.654	5	1	Median	2.1372	1.813	NaN	1	1	Median	0.71376	0.86773	NaN	1	0	Median	1.1518	1.1507	NaN	1	0	Median	1.2092	1.2878	6.393	2	0	Median	671390000	306890000	364500000	95226000	35223000	60004000	139940000	73376000	66568000	238740000	99235000	139510000	197470000	99058000	98415000	15235	3953	14447	92099;92100;92101;92102;92103	124431;124432	124431			2	
FEGVELNTDEPPMVFK	1	Unmodified	1850.8761	0.87605162	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	10	5								5	2	4	4	86.772	86.236	2;3	9.8477E-22	76675	160511_QHF_FH_JSI9i_1	119.25	97.495			1.1754	1.1324	15.365	12	11	Median	1.1126	0.89076	16.825	3	3	Plateau	0.87583	1.0602	6.0022	2	1	Median	1.1556	1.1287	19.67	4	4	Median	1.2347	1.2689	5.5268	3	3	Median	768210000	354430000	413780000	107650000	51146000	56507000	153050000	75236000	77818000	273660000	126790000	146870000	233850000	101260000	132590000	15236	1824	14448	92104;92105;92106;92107;92108;92109;92110;92111;92112;92113;92114;92115;92116;92117;92118	124433;124434;124435;124436;124437;124438;124439;124440;124441;124442;124443;124444;124445;124446;124447;124448;124449;124450;124451;124452;124453;124454;124455;124456	124450			24	
FEHCNFNDVTTR	0	Unmodified	1538.6572	0.6572255	1046	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.36		9	4						3	3	3	5	5	31.461	29.145	2;3	4.8434E-17	25005	160511_QHF_FH_JSI11i_3	137.95	132.44			0.83394	0.89651	25.755	15	1	Median	1.0696	0.91618	3.0696	2	1	Median	0.95245	1.1775	33.955	3	0	Plateau	0.64193	0.61943	7.8867	5	0	Median	0.93029	0.96081	6.0073	5	0	Median	1319300000	727190000	592120000	66943000	34826000	32118000	229310000	130110000	99202000	648360000	359740000	288620000	374690000	202510000	172180000	15237	1046	14449	92119;92120;92121;92122;92123;92124;92125;92126;92127;92128;92129;92130;92131;92132;92133;92134	124457;124458;124459;124460;124461;124462;124463;124464;124465;124466;124467;124468;124469;124470;124471;124472;124473;124474;124475;124476;124477;124478;124479;124480;124481;124482	124459			26	
FEIGEGENLDLPYGLER	0	Unmodified	1949.9371	0.93707198	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							2	5	2	3	92.909	92.547	2;3	9.0049E-266	81380	160511_QHF_FH_JSI11i_2	354.94	300.16			1.0352	0.97886	19.125	8	1	Median	1.1204	0.97886	0.71703	2	0	Median	0.70412	0.87089	NaN	1	0	Median	0.94178	0.92992	5.8882	2	1	Median	0.95743	1.0684	16.524	3	0	Plateau	668700000	330770000	337930000	141640000	63995000	77643000	99783000	58194000	41589000	207810000	106110000	101700000	219470000	102470000	117000000	15238	2193	14450	92135;92136;92137;92138;92139;92140;92141;92142;92143;92144;92145;92146	124483;124484;124485;124486;124487;124488;124489;124490;124491;124492;124493;124494;124495;124496;124497;124498;124499;124500;124501;124502;124503;124504;124505	124496			23	
FEIPYFTTSGIQVR	0	Unmodified	1656.8512	0.8511575	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	99.64	99.496	2;3	0.00026628	85716	160511_QHF_FH_JSI12i_2	92.866	75.953			0.83373	0.86304	18.743	8	2	Median	0.89227	0.77132	12.007	2	1	Median	0.76019	0.93687	18.575	2	0	Median	0.95639	0.96998	23.957	2	1	Median	0.96451	1.0311	21.274	2	0	Median	271240000	134680000	136560000	35328000	18971000	16357000	63223000	31223000	32000000	93450000	49439000	44010000	79237000	35046000	44192000	15239	4524	14451	92147;92148;92149;92150;92151;92152;92153;92154	124506;124507;124508;124509;124510;124511;124512;124513;124514;124515;124516;124517;124518;124519	124509			14	
FEISAIR	0	Unmodified	834.45995	0.45995289	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		49.983	49.242	2	0.027514	42523	160511_QHF_FH_JSI11i_2	53.554	15.909			0.64757	0.72049	1.3704	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59073	0.71354	NaN	1	0	Median	0.70988	0.7275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145520000	96975000	48541000	0	0	0	50797000	35887000	14910000	94719000	61088000	33631000	0	0	0	15240	4080	14452	92155;92156	124520	124520			1	
FEISETSVNRGPEK	1	Unmodified	1591.7842	0.78420015	1229	P23443	RPS6KB1	Ribosomal protein S6 kinase beta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	37.277	37.222	3	0.012189	32558	160511_QHF_FH_JSI11i_3	47.037	36.393			0.78491	0.84327	16.304	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87028	0.81679	22.91	2	2	Median	0.78491	0.84327	NaN	1	1	Median	122280000	65624000	56659000	0	0	0	0	0	0	102940000	54112000	48829000	19342000	11512000	7830500	15241	1229	14453	92157;92158;92159	124521;124522;124523	124521			3	
FEITVGMPFSSGADGSR	0	Unmodified	1756.809	0.80903469	597	O76024	WFS1	Wolframin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				77.24	76.359	2	0.048372	67935	160511_QHF_FH_JSI9i_1	42.556	17.119			0.27288	0.22026	NaN	1	1	Median	0.27288	0.22026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18921000	15388000	3533000	18921000	15388000	3533000	0	0	0	0	0	0	0	0	0	15242	597	14454	92160	124524	124524			1	
FEIWDTAGQER	0	Unmodified	1350.6204	0.62042929	1727;1174;1931	P20339;P51148;P61020	RAB5A;RAB5C;RAB5B	Ras-related protein Rab-5A;Ras-related protein Rab-5C;Ras-related protein Rab-5B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	62.649	61.763	2	3.4288E-07	54720	160511_QHF_FH_JSI10i_2	119.16	105.56			0.943	1.137	17.497	4	1	Linear	1.2467	1.0707	NaN	1	0	Median	0.96871	1.2075	NaN	1	0	Median	1.5071	1.4267	NaN	1	1	Median	0.85664	0.94663	NaN	1	0	Median	1033100000	512550000	520600000	260330000	110220000	150100000	320930000	176680000	144250000	65313000	32944000	32369000	386580000	192700000	193880000	15243	1174;1727;1931	14455	92161;92162;92163;92164	124525;124526;124527;124528;124529;124530;124531	124531			7	
FEKEAAEMGK	2	Acetyl (K);Oxidation (M)	1196.5383	0.53833914	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.5	1.22					3	4	3	2	1		5	5	3	27.621	19.446	2	4.4599E-09	11568	160513_QHF_FH_JSI10Kac_3	126.71	111.33			0.65517	0.73273	164.48	12	1	Median	NaN	NaN	NaN	0	0	Median	1.072	1.2749	225.92	5	1	Median	0.33711	0.33181	14.399	4	0	Linear	0.69453	0.72665	25.442	3	0	Median	629230000	375880000	253340000	0	0	0	190910000	79131000	111780000	269750000	197700000	72051000	168570000	99050000	69516000	15244	2072;2231	14456	92165;92166;92167;92168;92169;92170;92171;92172;92173;92174;92175;92176;92177	124532;124533;124534;124535;124536;124537;124538;124539;124540;124541;124542;124543;124544;124545;124546	124544	2144;2148	1730	15	
FEKEAAEMGK	2	Acetyl (K)	1180.5434	0.54342452	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.996						4	3	3	1	1	3	4	3	37.996	27.713	2	1.6869E-06	6045	160513_QHF_FH_JSI9Kac_3	128.01	67.579			0.63341	0.69002	108.46	11	2	Median	1.2547	1.0177	NaN	1	0	Median	1.0036	1.1647	124.64	3	1	Median	0.38373	0.37463	9.7926	4	0	Median	0.69145	0.75289	98.25	3	1	Plateau	920130000	540200000	379930000	113160000	51314000	61842000	282860000	124480000	158370000	318460000	238440000	80026000	205660000	125960000	79691000	15245	2072;2231	14456	92178;92179;92180;92181;92182;92183;92184;92185;92186;92187;92188	124547;124548;124549;124550;124551;124552;124553;124554;124555;124556;124557;124558;124559;124560;124561;124562;124563	124554	2144;2148		16	
FEKLIVALMK	2	Acetyl (K)	1232.7203	0.72026667	916	P08758	ANXA5	Annexin A5	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	90.453	81.194	2	2.8193E-09	45357	160513_QHF_FH_JSI11Kac_6	131.28	80.218			6.561	6.5067	4.461	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.1707	6.7152	NaN	1	1	Median	6.0031	6.3046	NaN	1	1	Median	192980000	114110000	78864000	21984000	21984000	0	0	0	0	100620000	56118000	44499000	70375000	36010000	34365000	15246	916	14457	92189;92190;92191;92192;92193	124564;124565;124566;124567;124568	124564	669		5	
FEKNFYQEHPDLAR	1	Acetyl (K)	1834.8638	0.86384745	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.7	0.471								1	2		1	2		63.112	53.451	3	0.00092006	28853	160513_QHF_FH_JSI11Kac_6	61.641	57.16			0.30669	0.29141	0.13913	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30669	0.29141	0.13913	2	0	Median	NaN	NaN	NaN	0	0	Median	78068000	53968000	24101000	0	0	0	4982700	0	4982700	73085000	53968000	19118000	0	0	0	15247	1128	14458	92194;92195;92196	124569;124570;124571	124569	974		3	
FELALQLGELK	1	Unmodified	1259.7125	0.71253876	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	94.785	94.389	2	0.000285	82933	160511_QHF_FH_JSI11i_2	90.108	72.596			0.65428	0.63766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65428	0.63766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7226800	4750900	2476000	0	0	0	0	0	0	7226800	4750900	2476000	0	0	0	15248	1438	14459	92197;92198	124572;124573	124573			2	
FELAVDAVHRK	1	Unmodified	1283.6986	0.69862003	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	39.392	38.831	4	4.6173E-05	33924	160511_QHF_FH_JSI11i_3	62.166	49.158			0.90547	0.98834	35.53	3	1	Median	NaN	NaN	NaN	0	0	Median	0.90547	1.0309	NaN	1	0	Median	1.0791	0.98834	NaN	1	0	Median	0.53289	0.5461	NaN	1	1	Median	184490000	103360000	81133000	0	0	0	35761000	17062000	18699000	91251000	47161000	44090000	57477000	39133000	18344000	15249	3801	14460	92199;92200;92201	124574;124575;124576;124577	124574			3	
FELDEDVK	1	Unmodified	993.46549	0.46549177	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1	0	3									1		1	1	45.142	44.388	2	8.9383E-05	39520	160511_QHF_FH_JSI9i_1	131.06	83.995			0.96098	0.93681	15.701	3	0	Plateau	0.87476	0.73015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96635	0.93681	NaN	1	0	Median	0.9165	0.97584	NaN	1	0	Median	750370000	373960000	376410000	210010000	106610000	103400000	0	0	0	286620000	141630000	145000000	253740000	125720000	128020000	15250	1573	14461	92202;92203;92204	124578;124579	124579			2	
FELDTSER	0	Unmodified	995.45599	0.45598972	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	34.855	34.084	2	0.0016392	30612	160511_QHF_FH_JSI11i_1	86.794	69.408			1.01	1.0176	18.573	8	0	Median	1.2923	1.0879	5.6566	2	0	Median	0.77682	0.91476	0.092663	2	0	Median	1.2703	1.2766	22.29	2	0	Median	0.8145	0.89296	14.692	2	0	Median	1695400000	831930000	863480000	313890000	132620000	181270000	440980000	248960000	192020000	574050000	256450000	317610000	366490000	193910000	172580000	15251	817	14462	92205;92206;92207;92208;92209;92210;92211;92212	124580;124581;124582;124583;124584;124585;124586;124587;124588	124580			9	
FELFVMK	1	Unmodified	912.47791	0.47791114	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	79.296	78.443	2	0.0025366	69902	160511_QHF_FH_JSI10i_2	110.36	90.081			0.94735	0.94255	10.512	7	0	Median	1.0455	0.87886	11.087	2	0	Median	0.72429	0.8554	13.72	2	0	Median	1.003	0.96451	12.564	2	0	Median	0.8656	0.95796	NaN	1	0	Median	545310000	276040000	269270000	101930000	49165000	52761000	130680000	72036000	58646000	210250000	104350000	105900000	102460000	50495000	51967000	15252	2614	14463	92213;92214;92215;92216;92217;92218;92219	124589;124590;124591;124592;124593;124594;124595;124596;124597;124598;124599;124600;124601;124602;124603;124604;124605	124605			17	
FELFVMKK	2	Unmodified	1040.5729	0.57287415	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	63.848	62.753	3	0.0027573	53873	160511_QHF_FH_JSI12i_3	61.962	51.205			2.4147	2.2264	24.704	3	2	Plateau	2.1313	1.7961	NaN	1	0	Median	1.8381	2.2264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7357	2.9398	NaN	1	1	Median	35943000	13645000	22298000	10837000	4149100	6687700	5677300	2102400	3574800	0	0	0	19429000	7393700	12035000	15253	2614	14464	92220;92221;92222	124606;124607;124608	124608			3	
FELLTNFPR	0	Unmodified	1135.6026	0.60259438	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.117	78.939	2	0.0066733	68225	160511_QHF_FH_JSI12i_2	55.37	37.384			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15254	618	14465	92223	124609	124609			1	
FELQHGTEEQQEEVRK	1	Unmodified	1985.9443	0.94428262	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		25.701	25.701	3;4	5.2204E-05	21958	160511_QHF_FH_JSI11i_3	74.428	57.935			0.67351	0.6347	15.972	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67351	0.6347	15.972	2	1	Median	NaN	NaN	NaN	0	0	Median	82503000	46224000	36280000	0	0	0	0	0	0	82503000	46224000	36280000	0	0	0	15255	623	14466	92224;92225	124610;124611;124612	124611			3	
FELSCYSLAPQIK	1	Unmodified	1554.7752	0.77521537	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.21		8	5					1	2	3	3	7	3	81.194	78.798	2;3	2.8602E-36	39736	160513_QHF_FH_JSI11Kac_6	212.72	187.88			0.86177	0.88679	29.378	16	9	Median	1.294	1.1183	12.399	3	2	Plateau	0.66182	0.7719	10.74	3	2	Median	0.73786	0.74358	20.871	7	4	Median	1.2319	1.3846	24.668	3	1	Median	2629900000	1406100000	1223800000	256130000	116490000	139640000	587890000	345570000	242320000	1168500000	698870000	469620000	617350000	245160000	372200000	15256	779	14467	92226;92227;92228;92229;92230;92231;92232;92233;92234;92235;92236;92237;92238;92239;92240;92241	124613;124614;124615;124616;124617;124618;124619;124620;124621;124622;124623;124624;124625;124626;124627;124628;124629;124630;124631;124632;124633;124634	124620			22	
FELTGIPPAPR	0	Unmodified	1196.6554	0.65535823	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								4	4	2	1	68.075	67.407	2	0.0010405	59156	160511_QHF_FH_JSI9i_2	71.223	15.212			0.91255	0.91655	48.568	9	5	Median	1.5167	1.268	22.95	3	2	Plateau	0.63648	0.7567	64.419	4	2	Median	0.92831	0.91736	0.12502	2	1	Median	NaN	NaN	NaN	0	0	Median	1611200000	836690000	774500000	750430000	297810000	452620000	532020000	376330000	155690000	328750000	162560000	166190000	0	0	0	15257	985	14468	92242;92243;92244;92245;92246;92247;92248;92249;92250;92251;92252	124635;124636;124637;124638;124639;124640;124641;124642;124643;124644;124645;124646;124647;124648;124649;124650;124651;124652;124653	124646			19	
FELYFQGPSSNKPR	1	Unmodified	1668.826	0.82600539	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			58.652	57.111	3	0.002972	46817	160511_QHF_FH_JSI9i_3	51.939	40.883			0.96342	0.92088	17.735	2	0	Median	1.2799	1.0439	NaN	1	0	Median	0.72518	0.81235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96449000	48472000	47977000	56236000	24758000	31478000	40213000	23714000	16499000	0	0	0	0	0	0	15258	1411	14469	92253;92254	124654;124655	124654			2	
FEMGHVR	0	Unmodified	874.41196	0.41195684	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	19.022	18.702	2;3	0.01522	15012	160511_QHF_FH_JSI12i_3	40.103	31.331			1.5293	1.482	29.725	6	0	Plateau	0.99239	0.8499	NaN	1	0	Median	1.0035	1.2316	NaN	1	0	Median	1.1006	1.0696	45.117	2	0	Median	1.4671	1.4872	4.8898	2	0	Median	525430000	233280000	292140000	41259000	22779000	18480000	45599000	23432000	22166000	156470000	63527000	92940000	282100000	123540000	158560000	15259	2194	14470	92255;92256;92257;92258;92259;92260	124656;124657;124658;124659	124659			4	
FENAAAGNKPEAVEVTFADFDGVLYHISNPNGDK	2	Unmodified	3635.7169	0.71685545	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.22	101.22	4	1.2386E-39	90211	160511_QHF_FH_JSI11i_3	127.78	112.26			1.3075	1.2447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3075	1.2447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	291710000	117480000	174230000	0	0	0	0	0	0	291710000	117480000	174230000	0	0	0	15260	256	14471	92261	124660	124660			1	
FENAFLSHVVSQHQALLGTIR	0	Unmodified	2366.2495	0.24951318	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.44		4	28						9	16	13	6	6	88.743	86.275	3;4	1.6239E-73	39512	160513_QHF_FH_JSI12Kac_6	207.44	164.14			0.92226	0.85632	29.591	41	10	Median	1.0819	0.88412	27.358	16	4	Median	0.69595	0.77143	25.674	13	3	Median	0.85136	0.81252	23.02	6	1	Median	0.8179	0.84981	45.598	6	2	Median	24043000000	11999000000	12044000000	6863000000	2903100000	3959900000	12199000000	5953800000	6245200000	3375100000	2036100000	1339100000	1605700000	1106200000	499450000	15261	1263	14472	92262;92263;92264;92265;92266;92267;92268;92269;92270;92271;92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286;92287;92288;92289;92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302	124661;124662;124663;124664;124665;124666;124667;124668;124669;124670;124671;124672;124673;124674;124675;124676;124677;124678;124679;124680;124681;124682;124683;124684;124685;124686;124687;124688;124689;124690;124691;124692;124693;124694;124695;124696;124697;124698;124699;124700;124701;124702;124703;124704;124705;124706;124707;124708;124709;124710;124711;124712;124713;124714;124715;124716;124717;124718;124719	124716			57	
FENLGIQPPK	1	Unmodified	1141.6132	0.61315906	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	4.52	5	6					2			2	3	4	4	52.582	50.75	2;3	5.2951E-11	46009	160511_QHF_FH_JSI11i_1	147.2	125.07			1.0342	1.0314	20.233	10	4	Median	1.2573	1.0481	7.093	2	0	Median	0.93613	1.1074	19.464	2	1	Median	1.0469	1.0368	1.226	3	1	Median	0.88839	0.93454	33.178	3	2	Median	930000000	488980000	441020000	178420000	79430000	98989000	219820000	121060000	98757000	285420000	155870000	129550000	246330000	132610000	113720000	15262	1131	14473	92303;92304;92305;92306;92307;92308;92309;92310;92311;92312;92313;92314;92315	124720;124721;124722;124723;124724;124725;124726;124727;124728;124729;124730;124731;124732;124733;124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745;124746;124747;124748;124749;124750;124751;124752;124753	124723			34	
FENSIESLR	0	Unmodified	1093.5404	0.54038805	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		40.124	39.665	2	0.0013868	33944	160511_QHF_FH_JSI11i_2	69.276	50.873			1.2013	1.2194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2013	1.2194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57250000	31859000	25392000	0	0	0	0	0	0	57250000	31859000	25392000	0	0	0	15263	2118	14474	92316;92317	124754;124755	124755			2	
FEPEYSQIK	1	Unmodified	1139.5499	0.5498901	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.8	5.11	3	1					1			1	1		3	43.119	39.732	2	0.0023906	36146	160511_QHF_FH_JSI12i_1	74.301	32.322			0.91028	0.85537	27.87	4	3	Median	0.91106	0.75467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9095	0.96951	33.229	3	2	Median	355710000	198670000	157040000	98898000	57894000	41004000	0	0	0	0	0	0	256820000	140780000	116040000	15264	3132	14475	92318;92319;92320;92321;92322	124756;124757;124758;124759;124760	124757			5	
FEPIHGNFLLTGAYDNTAK	1	Unmodified	2107.0375	0.037454724	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	78.075	77.389	3	8.5897E-10	68769	160511_QHF_FH_JSI10i_2	118.46	109.66			0.76171	0.87996	21.56	8	6	Median	0.70988	0.60236	NaN	1	1	Median	0.67279	0.81575	10.211	2	2	Median	0.96472	0.94823	6.4863	2	1	Median	0.80243	0.8831	27.048	3	2	Median	663210000	371730000	291480000	51400000	32041000	19358000	146420000	90061000	56356000	212230000	115250000	96987000	253160000	134380000	118780000	15265	308	14476	92323;92324;92325;92326;92327;92328;92329;92330	124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771	124769			11	
FEPPQSDSDGQRR	0	Unmodified	1517.6859	0.68588309	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	14.573	14.256	2;3	8.1635E-05	11490	160511_QHF_FH_JSI11i_3	64.121	55.071			0.97181	0.98791	7.513	6	1	Median	1.3284	1.1336	NaN	1	0	Median	0.81793	1.0019	5.071	2	0	Median	1.0445	0.98346	3.7218	2	0	Median	0.91301	0.91454	NaN	1	1	Median	240000000	114130000	125870000	66431000	25190000	41241000	68421000	29521000	38900000	75481000	39863000	35618000	29667000	19553000	10114000	15266	238	14477	92331;92332;92333;92334;92335;92336	124772;124773;124774;124775;124776;124777;124778	124772			5	
FEPQINAEESEIR	0	Unmodified	1560.742	0.74200098	1391	Q14409;P32189	GK3P;GK	Putative glycerol kinase 3;Glycerol kinase	yes	no	0	0	0	0				By MS/MS	2	0		1											1	53.789	52.403	2	0.010059	44889	160511_QHF_FH_JSI12i_2	45.973	34.808			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15267	1391	14478	92337	124779	124779			1	
FEPQVDTEAEDMISAVK	1	Unmodified	1907.8823	0.88225921	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	3	2	3	84.6	84.211	2;3	3.6609E-22	76693	160511_QHF_FH_JSI11i_1	176.89	163.08			0.91297	0.90728	27.86	9	5	Median	0.93105	0.77846	NaN	1	0	Median	0.78218	0.90728	16.813	3	3	Median	1.3803	1.3399	5.5449	2	0	Median	0.88775	0.90561	39.039	3	2	Median	537880000	276280000	261600000	63528000	34930000	28598000	198990000	120600000	78397000	141440000	54574000	86865000	133920000	66179000	67740000	15268	5330	14479	92338;92339;92340;92341;92342;92343;92344;92345;92346	124780;124781;124782;124783;124784;124785;124786;124787;124788;124789;124790;124791;124792;124793	124780			14	
FEPSSQMIEVQEGQNLK	1	Unmodified	1962.9357	0.93569177	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	62.348	61.967	2	1.2866E-32	56586	160511_QHF_FH_JSI12i_1	151.74	112.11			1.1087	1.2605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1087	1.2605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24574000	9905400	14668000	0	0	0	24574000	9905400	14668000	0	0	0	0	0	0	15269	2638;2895	14480	92347;92348	124794;124795	124794			2	
FEPTVFR	0	Unmodified	894.45995	0.45995289	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	1	2	2	47.875	46.991	2	0.0084038	40434	160511_QHF_FH_JSI11i_2	83.614	10.575			1.1411	1.0042	21.281	7	0	Median	1.2357	1.035	14.068	2	0	Median	0.81101	1.0042	NaN	1	0	Median	1.1583	1.1411	36.341	2	0	Median	1.0367	1.1435	31.466	2	0	Median	1025300000	525800000	499490000	187910000	69337000	118570000	179780000	109090000	70688000	367360000	199330000	168020000	290250000	148040000	142210000	15270	5722	14481	92349;92350;92351;92352;92353;92354;92355	124796;124797;124798;124799;124800;124801;124802;124803	124801			8	
FEPVHFVASSSK	1	Unmodified	1333.6667	0.6666512	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								3	2	1	44.139	43.421	2	4.5071E-05	36954	160511_QHF_FH_JSI12i_3	100.69	59.257			1.0725	1.0284	32.309	6	5	Median	NaN	NaN	NaN	0	0	Median	1.4104	1.6365	37.421	3	3	Median	0.95842	0.89242	12.534	2	2	Median	1.1057	1.0846	NaN	1	0	Median	414330000	187780000	226540000	0	0	0	53564000	27332000	26232000	233640000	102060000	131580000	127120000	58391000	68728000	15271	264	14482	92356;92357;92358;92359;92360;92361	124804;124805;124806;124807;124808;124809;124810	124810			7	
FEPYANPTK	1	Unmodified	1065.5131	0.51311067	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		29.539	28.886	2	0.001145	25228	160511_QHF_FH_JSI10i_2	79.906	69.492			1.4865	1.6346	8.8403	2	2	Median	NaN	NaN	NaN	0	0	Median	1.415	1.74	NaN	1	1	Median	1.5615	1.5355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90069000	39729000	50340000	0	0	0	24892000	12421000	12471000	65177000	27308000	37869000	0	0	0	15272	1765	14483	92362;92363;92364	124811;124812;124813	124813			3	
FEQAQMLDPYLIK	1	Unmodified	1594.8065	0.8065155	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	81.746	81.471	2	4.6878E-05	74288	160511_QHF_FH_JSI12i_1	116.54	92.688			0.9903	1.1587	30.236	3	3	Median	NaN	NaN	NaN	0	0	Median	0.81415	0.95878	26.788	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3386	1.4421	NaN	1	1	Median	139990000	66867000	73122000	0	0	0	103370000	55892000	47479000	0	0	0	36618000	10975000	25643000	15273	5351	14484	92365;92366;92367	124814;124815;124816;124817	124815			4	
FESFPAGSTLIFYK	1	Unmodified	1605.8079	0.80789571	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.958	76.834	2	8.2316E-13	42643	160513_QHF_FH_JSI11Kac_6	133.05	89.538			0.75686	0.80317	15.235	3	0	Median	0.75387	0.65735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92987	0.88644	NaN	1	0	Median	0.75686	0.80317	NaN	1	0	Median	181140000	110020000	71124000	76267000	44162000	32105000	0	0	0	65335000	38481000	26854000	39537000	27372000	12165000	15274	2906	14485	92368;92369;92370;92371	124818;124819;124820;124821;124822;124823	124819			6	
FESGDVK	1	Unmodified	780.36538	0.3653838	4624	Q9H0A8	COMMD4	COMM domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.869	10.633	2	0.02833	8425	160511_QHF_FH_JSI10i_1	55.441	33.894			1.5827	1.8759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5827	1.8759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191170000	49180000	141990000	0	0	0	191170000	49180000	141990000	0	0	0	0	0	0	15275	4624	14486	92372	124824	124824			1	
FESIMTNLEYPSPSEVFTK	1	Unmodified	2218.0504	0.050387176	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		99.45	99.275	3	0.01815	87110	160511_QHF_FH_JSI11i_2	31.818	22.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15276	316	14487	92373	124825	124825			1	
FESLEPEMNNQASR	0	Unmodified	1650.7308	0.73078437	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.099	41.737	2	0.007589	37638	160511_QHF_FH_JSI11i_1	89.731	74.192			1.4843	1.4557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4843	1.4557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44106000	18825000	25281000	0	0	0	0	0	0	44106000	18825000	25281000	0	0	0	15277	2162	14488	92374	124826	124826			0	
FESPESQASAEQPEM	0	Unmodified	1665.6828	0.68283113	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.348	47.667	2	8.1811E-30	42947	160511_QHF_FH_JSI10i_1	189.72	187.3			1.058	1.0177	10.989	4	0	Median	1.315	1.0746	NaN	1	0	Median	0.80307	0.92899	NaN	1	0	Median	0.9838	0.9638	NaN	1	0	Median	1.1379	1.1839	NaN	1	0	Median	717130000	360140000	356990000	90832000	50676000	40155000	204410000	101900000	102510000	254630000	131160000	123470000	167250000	76408000	90846000	15278	525	14489	92375;92376;92377;92378	124827;124828;124829;124830;124831;124832;124833;124834	124832			8	
FESPEVAER	0	Unmodified	1062.4982	0.49818889	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	4.53	6	4	1				2			4	3	3	3	28.016	25.743	2	8.7542E-06	22487	160511_QHF_FH_JSI9i_1	129.42	112.18			1.0893	1.1016	9.1571	12	8	Median	1.2608	1.0243	4.5204	4	4	Median	0.90327	1.0805	8.8762	3	1	Plateau	1.0339	1.0357	12.3	2	2	Median	1.091	1.1863	3.1547	3	1	Plateau	6458100000	3369500000	3088600000	1791600000	810830000	980770000	1622500000	925230000	697250000	1827600000	1012300000	815370000	1216400000	621190000	595210000	15279	1765	14490	92379;92380;92381;92382;92383;92384;92385;92386;92387;92388;92389;92390;92391	124835;124836;124837;124838;124839;124840;124841;124842;124843;124844;124845;124846;124847;124848	124844			14	
FESSSHAISMSAYLR	0	Unmodified	1684.7879	0.78790532	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			62.383	53.696	3	0.0094836	28643	160513_QHF_FH_JSI9Kac_6	37.657	27.318			0.9707	0.97703	13.416	2	1	Median	1.036	0.8886	NaN	1	0	Median	0.90949	1.0743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54973000	25358000	29615000	20269000	8595500	11674000	34704000	16762000	17941000	0	0	0	0	0	0	15280	3962	14491	92392;92393	124849;124850	124849			2	
FESTDLDMLIK	1	Unmodified	1310.6428	0.64280421	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	81.682	81.247	2	0.049261	74044	160511_QHF_FH_JSI12i_1	43.635	26.917			0.88429	0.89361	13.159	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0096	0.98074	NaN	1	1	Median	0.77456	0.81421	NaN	1	1	Median	76359000	47256000	29103000	0	0	0	0	0	0	33984000	22502000	11482000	42375000	24754000	17620000	15281	2100	14492	92394;92395	124851;124852	124852			2	
FETEQALR	0	Unmodified	992.49271	0.49270958	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	26.851	25.983	2	0.005887	22393	160511_QHF_FH_JSI9i_2	64.265	24.161		+	0.48146	0.40977	58.829	3	1	Plateau	0.48146	0.40977	NaN	1	0	Median	0.46662	0.56081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1668	1.2799	NaN	1	0	Median	267700000	150730000	116970000	83856000	47393000	36463000	125620000	74317000	51306000	0	0	0	58220000	29017000	29203000	15282	65	14493	92396;92397;92398;92399;92400	124853;124854;124855;124856;124857	124855			5	
FETFCLDPSLVTK	1	Unmodified	1555.7592	0.75923095	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	86.586	86.162	2	0.0020915	78531	160511_QHF_FH_JSI11i_1	69.672	53.001			1.4764	1.4571	42.193	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.113	1.0812	NaN	1	1	Median	1.9583	1.9637	NaN	1	1	Median	27719000	13905000	13814000	0	0	0	0	0	0	17886000	9470600	8415900	9833000	4434700	5398300	15283	5295	14494	92401;92402	124858;124859;124860	124859			3	
FETLQAQAGK	1	Unmodified	1091.5611	0.56112349	71;53;83	CON__P08729;CON__Q3KNV1;P08729;CON__Q9DCV7	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.9	7	5	1				3			3	4	4	5	27.93	25.618	2	1.4898E-15	21491	160511_QHF_FH_JSI11i_2	169.12	149.34		+	0.87788	0.9696	81.387	16	8	Median	1.4648	1.2004	67.897	3	2	Median	0.72855	0.88805	57.228	4	2	Median	1.1995	1.2002	68.572	4	2	Median	0.72005	0.74376	124.25	5	2	Median	5879300000	3131500000	2747800000	1198100000	491070000	707080000	1789600000	1141900000	647720000	1604000000	870640000	733310000	1287600000	627840000	659730000	15284	53;71;83	14495	92403;92404;92405;92406;92407;92408;92409;92410;92411;92412;92413;92414;92415;92416;92417;92418	124861;124862;124863;124864;124865;124866;124867;124868;124869;124870;124871;124872;124873;124874;124875;124876;124877;124878;124879;124880;124881	124876			21	
FETLQAQAGKHGDDLR	1	Acetyl (K)	1826.8911	0.89112484	71;53;83	CON__P08729;CON__Q3KNV1;P08729;CON__Q9DCV7	KRT7	Keratin, type II cytoskeletal 7	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.373								5	1		2	3	1	49.702	39.387	2;3	0.0011783	20293	160513_QHF_FH_JSI10Kac_5	59.502	49.714		+	0.58506	0.66371	78.759	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0804	1.2691	41.251	2	0	Median	0.28751	0.28323	NaN	1	0	Median	0.42041	0.46467	NaN	1	0	Median	50374000	37207000	13167000	0	0	0	8961600	4585300	4376400	37390000	29781000	7609100	4022500	2840700	1181700	15285	53;71;83	14496	92419;92420;92421;92422;92423;92424	124882;124883;124884;124885;124886;124887;124888	124888	32		7	
FETPGIMQFTNEEK	1	Unmodified	1669.7658	0.76577289	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	3	2	74.33	73.688	2;3	2.7313E-10	64098	160511_QHF_FH_JSI12i_3	152.85	126.81			1.0904	1.2121	19.189	7	2	Median	1.2323	1.0723	NaN	1	0	Median	1.0267	1.2832	8.0619	2	2	Median	1.3583	1.3334	37.352	2	0	Median	1.0756	1.1493	17.428	2	0	Median	673960000	320600000	353360000	123530000	63371000	60162000	200560000	102170000	98391000	212780000	86682000	126100000	137080000	68380000	68702000	15286	2185	14497	92425;92426;92427;92428;92429;92430;92431;92432	124889;124890;124891;124892;124893;124894;124895;124896;124897;124898;124899;124900;124901;124902;124903	124902			15	
FETPLDLAALYGR	0	Unmodified	1464.7613	0.76127986	3864	Q92625	ANKS1A	Ankyrin repeat and SAM domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				99.476	99.386	2	0.0055786	87327	160511_QHF_FH_JSI9i_2	61.65	25.316			1.8244	1.5353	NaN	1	1	Median	1.8244	1.5353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8666800	2430100	6236700	8666800	2430100	6236700	0	0	0	0	0	0	0	0	0	15287	3864	14498	92433	124904	124904			1	
FEVAQVESLR	0	Unmodified	1176.6139	0.61388734	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.335	58.908	2	0.030915	53467	160511_QHF_FH_JSI11i_1	39.622	10.704			0.75215	0.72915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75215	0.72915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26128000	13366000	12762000	0	0	0	0	0	0	26128000	13366000	12762000	0	0	0	15288	1016	14499	92434	124905	124905			1	
FEVGDIMLIR	0	Unmodified	1191.6322	0.63217995	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	94.478	94.16	2	5.2838E-06	81212	160511_QHF_FH_JSI12i_2	108.98	90.942			0.87544	0.94881	8.7082	5	0	Median	1.1519	0.97261	NaN	1	0	Median	0.67159	0.83934	NaN	1	0	Median	0.83325	0.84723	NaN	1	0	Median	0.92957	0.98493	5.2842	2	0	Median	481660000	263330000	218330000	90519000	44118000	46401000	103930000	58240000	45695000	181780000	106030000	75744000	105430000	54944000	50486000	15289	771	14500	92435;92436;92437;92438;92439	124906;124907;124908;124909;124910;124911;124912;124913	124907			8	
FEVIEKPQA	1	Acetyl (K)	1101.5706	0.57062555	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	74.508	65.991	2	0.034778	28562	160513_QHF_FH_JSI12Kac_2	47.082	37.095			0.61541	0.61281	56.264	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43061	0.41166	NaN	1	0	Median	0.87952	0.91223	NaN	1	0	Median	7379700	4473800	2905900	0	0	0	0	0	0	1726100	1143200	582860	5653600	3330600	2323100	15290	1149	14501	92440;92441	124914;124915	124915			2	
FEVIEKPQA	1	Unmodified	1059.5601	0.56006086	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		1.67	0.471	1	2								1	1	1		42.963	42.317	2	0.0069097	38061	160511_QHF_FH_JSI10i_1	70.919	52.594			0.67916	0.92633	28.972	3	0	Plateau	0.67916	0.59113	NaN	1	0	Median	0.52353	0.62068	NaN	1	0	Median	0.99475	0.99871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	191870000	111250000	80623000	48814000	29926000	18888000	62935000	41906000	21029000	80120000	39414000	40706000	0	0	0	15291	1149	14501	92442;92443;92444	124916	124916			1	
FEVIPQSIR	0	Unmodified	1087.6026	0.60259438	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	5.71		2						5	1	1	1	2	4	68.26	59.032	2	0.0015616	51288	160511_QHF_FH_JSI11i_2	70.919	51.442			1.0106	1.0144	24.159	7	1	Median	1.2132	1.0144	NaN	1	0	Median	0.83031	0.98892	NaN	1	0	Median	1.0106	0.99251	NaN	1	0	Median	1.0747	1.1896	32.771	4	1	Median	132240000	61004000	71235000	4383200	1709600	2673600	3840100	1953000	1887100	5203100	2143500	3059500	118810000	55198000	63615000	15292	3841	14502	92445;92446;92447;92448;92449;92450;92451;92452	124917;124918;124919;124920;124921;124922;124923;124924;124925;124926	124920			10	
FEVIPQSIRLEDLK	1	Unmodified	1685.9352	0.93522148	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	83.795	82.7	3	0.005278	71448	160511_QHF_FH_JSI12i_2	52.576	40.193			2.1403	2.3305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1403	2.3305	NaN	1	1	Median	37853000	11431000	26422000	0	0	0	0	0	0	0	0	0	37853000	11431000	26422000	15293	3841	14503	92453	124927	124927			1	
FEVQGLQPNGEEMTLK	1	Unmodified	1818.8822	0.88219964	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	3	1	72.368	71.871	2	9.4092E-17	63034	160511_QHF_FH_JSI11i_2	122.42	92.616			0.57302	0.64773	28.131	3	2	Median	0.98993	0.8377	NaN	1	0	Median	0.57302	0.64773	NaN	1	1	Median	0.49849	0.47757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108820000	67184000	41634000	36675000	23198000	13477000	34496000	17905000	16591000	37646000	26081000	11566000	0	0	0	15294	1208	14504	92454;92455;92456;92457;92458;92459	124928;124929;124930;124931;124932;124933	124933			6	
FEYKYSFK	2	Acetyl (K)	1152.5492	0.54916182	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.69	56.024	2	0.042847	30348	160513_QHF_FH_JSI11Kac_6	57.859	35.119			0.43145	0.4252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43145	0.4252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15540000	11277000	4262500	0	0	0	0	0	0	15540000	11277000	4262500	0	0	0	15295	1648	14505	92460	124934	124934			1	
FFADDTQAALTK	1	Unmodified	1326.6456	0.6455814	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	1	1	2	47.959	47.135	2	0.00011763	42424	160511_QHF_FH_JSI10i_1	102.52	89.146			0.62522	0.70258	27.84	5	3	Median	0.54485	0.44753	NaN	1	1	Median	0.46766	0.55092	NaN	1	1	Median	0.87987	0.86053	NaN	1	0	Median	0.70376	0.76335	11.732	2	1	Median	560400000	334310000	226080000	108550000	72366000	36187000	108870000	65508000	43362000	171930000	91445000	80490000	171040000	104990000	66045000	15296	615	14506	92461;92462;92463;92464;92465	124935;124936;124937;124938	124937			4	
FFADDTQAALTKHLLK	2	Acetyl (K)	1859.9781	0.97814893	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.932	69.618	3	1.5307E-16	38149	160513_QHF_FH_JSI11Kac_6	134.85	122.3			0.43138	0.40822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43138	0.40822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52256000	36351000	15905000	0	0	0	0	0	0	52256000	36351000	15905000	0	0	0	15297	615	14507	92466	124939;124940	124940	316		2	
FFADLLDYIK	1	Unmodified	1243.6489	0.64887587	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	1	2	98.928	95.805	2	6.6028E-11	90065	160511_QHF_FH_JSI10i_2	145.17	126.08			1.1019	1.0511	26.227	6	0	Median	1.5438	1.3214	47.421	2	0	Median	0.80057	0.97447	NaN	1	0	Median	1.0925	1.1337	NaN	1	0	Median	1.0128	1.1057	22.317	2	0	Median	3396700000	1678500000	1718300000	557130000	258010000	299120000	713510000	416490000	297030000	993700000	482930000	510770000	1132400000	521030000	611370000	15298	772	14508	92467;92468;92469;92470;92471;92472	124941;124942;124943;124944;124945;124946;124947;124948;124949;124950	124948			10	
FFAGIVWQHVYEK	1	Unmodified	1622.8245	0.82454882	1377	P31749	AKT1	RAC-alpha serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	79.691	70.563	2;3	2.2803E-06	38182	160513_QHF_FH_JSI9Kac_6	128.01	112.01			1.2344	1.2625	65.883	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80874	0.79234	NaN	1	1	Median	1.8842	2.0117	NaN	1	1	Median	128460000	63289000	65169000	10472000	10472000	0	0	0	0	20844000	11945000	8898900	97142000	40872000	56270000	15299	1377	14509	92473;92474;92475	124951;124952;124953	124952			3	
FFALVNALDEHLFPVR	0	Unmodified	1887.0043	0.004304102	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.91	86.518	3	2.9462E-05	50819	160513_QHF_FH_JSI10Kac_6	146.78	134.68			2.2808	2.2914	36.187	4	4	Median	1.5602	1.3416	NaN	1	1	Median	2.6136	3.0546	NaN	1	1	Median	2.1015	1.9928	NaN	1	1	Median	2.4755	2.6348	NaN	1	1	Median	290590000	86871000	203710000	69651000	27711000	41939000	105410000	28126000	77289000	74391000	16611000	57779000	41130000	14423000	26707000	15300	4181	14510	92476;92477;92478;92479	124954;124955;124956;124957	124957			4	
FFCFQVLEHQVK	1	Unmodified	1580.781	0.78096945	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.7	6.13			1						2	1	1	1		75.526	70.57	3	1.9737E-06	38289	160513_QHF_FH_JSI10Kac_6	101.89	82.148			0.81673	0.80473	8.4956	3	1	Plateau	0.94127	0.80473	NaN	1	1	Median	0.79657	0.91965	NaN	1	0	Median	0.85095	0.78541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180110000	110200000	69911000	21929000	13047000	8882400	85996000	51878000	34118000	72183000	45272000	26910000	0	0	0	15301	344	14511	92480;92481;92482	124958;124959;124960	124960			2	
FFDANYDGK	1	Unmodified	1075.4611	0.4610751	2698	Q15691;Q9UPY8	MAPRE1;MAPRE3	Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.16	7	7					1			4	4	4	3	34.863	33.434	2	0.00013022	30381	160511_QHF_FH_JSI12i_1	91.087	77.084			0.84732	0.91121	85.649	15	14	Median	0.99449	0.80532	112	4	4	Median	0.76596	0.9416	85.734	4	4	Median	0.88789	0.87228	98.696	4	4	Median	0.84732	0.91121	75.932	3	2	Median	3915700000	1990500000	1925200000	967760000	438340000	529430000	1195900000	721490000	474450000	1062700000	557940000	504780000	689240000	272720000	416520000	15302	2698	14512	92483;92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497	124961;124962;124963;124964;124965;124966;124967;124968;124969;124970;124971;124972;124973;124974;124975;124976	124966			16	
FFDDPMLLELAK	1	Unmodified	1437.7214	0.72138888	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		2	1	99.942	99.832	2	1.5797E-05	87878	160511_QHF_FH_JSI11i_2	113.44	106.17			0.90531	0.89607	17.356	4	2	Median	0.88428	0.75215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94034	0.91492	20.741	2	1	Median	0.92683	1.0163	NaN	1	0	Median	568210000	309650000	258570000	142840000	88373000	54466000	0	0	0	242450000	127490000	114960000	182930000	93783000	89143000	15303	2609	14513	92498;92499;92500;92501	124977;124978;124979;124980;124981;124982;124983	124983			7	
FFDEESYSLLR	0	Unmodified	1404.6561	0.65614609	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.76	1	5	2					3		2	2	5	2	73.22	69.807	2	2.5174E-11	62034	160511_QHF_FH_JSI11i_2	195.79	186.43			0.88482	0.84673	43.869	11	3	Median	0.97032	0.80299	7.3795	2	0	Median	0.66469	0.79018	9.7759	2	0	Median	1.0912	1.0594	63.728	5	3	Median	0.78919	0.87201	11.996	2	0	Median	2565900000	1318400000	1247500000	410690000	216420000	194270000	459320000	305040000	154280000	1356100000	649230000	706870000	339800000	147700000	192100000	15304	1740	14514	92502;92503;92504;92505;92506;92507;92508;92509;92510;92511;92512	124984;124985;124986;124987;124988;124989;124990;124991;124992;124993;124994;124995	124992			12	
FFDEESYSLLRK	1	Unmodified	1532.7511	0.75110911	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.05		10	10						4	5	6	6	7	62.186	60.081	2;3	4.0221E-06	51519	160511_QHF_FH_JSI12i_3	174.42	159.03			1.0267	1.2085	74.461	24	23	Median	1.7578	1.4644	57.54	5	5	Median	1.0267	1.2085	68.102	6	5	Median	0.9354	0.91025	99.176	6	6	Median	0.66558	0.71555	83.409	7	7	Median	11649000000	5466000000	6182800000	897490000	439340000	458150000	2034900000	994720000	1040200000	3601700000	1510300000	2091500000	5114600000	2521700000	2592900000	15305	1740	14515	92513;92514;92515;92516;92517;92518;92519;92520;92521;92522;92523;92524;92525;92526;92527;92528;92529;92530;92531;92532;92533;92534;92535;92536	124996;124997;124998;124999;125000;125001;125002;125003;125004;125005;125006;125007;125008;125009;125010;125011;125012;125013;125014;125015;125016;125017;125018;125019;125020;125021	125017			26	
FFDGELTK	1	Unmodified	955.4651	0.46509784	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	40.889	39.68	2	0.010658	34636	160511_QHF_FH_JSI9i_2	63.48	49.322			2.5405	2.4891	9.8698	2	2	Median	2.7119	2.3213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3798	2.6691	NaN	1	1	Median	280470000	125200000	155280000	118790000	52102000	66688000	0	0	0	0	0	0	161680000	73094000	88587000	15306	1596	14516	92537;92538;92539	125022;125023;125024	125023			3	
FFDHSGTLVMDAYEPEISR	0	Unmodified	2213.0099	0.0099193444	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.58		11	2						1	4	1	4	5	74.938	73.473	2;3	1.3939E-20	64870	160511_QHF_FH_JSI11i_2	230.97	190.4			1.0073	0.95463	30.244	10	7	Median	1.3849	1.1797	15.934	2	2	Median	0.70384	0.8585	NaN	1	1	Median	0.85236	0.86461	32.384	3	1	Median	1.0424	1.092	35.648	4	3	Median	1183300000	551620000	631700000	183790000	73290000	110500000	201620000	117780000	83838000	410000000	182080000	227920000	387910000	178470000	209440000	15307	2596	14517	92540;92541;92542;92543;92544;92545;92546;92547;92548;92549;92550;92551;92552;92553	125025;125026;125027;125028;125029;125030;125031;125032;125033;125034;125035;125036;125037;125038;125039;125040;125041;125042;125043;125044	125038			20	
FFDHSGTLVMDAYEPEISR	0	Oxidation (M)	2229.0048	0.0048339665	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS		2	0		2									1	1		65.371	64.824	3	0.014553	57232	160511_QHF_FH_JSI10i_2	32.156	27.063			0.95363	0.95092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95363	0.95092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31434000	15655000	15779000	0	0	0	0	0	0	31434000	15655000	15779000	0	0	0	15308	2596	14517	92554;92555	125045;125046	125046		2041	2	
FFDLFEK	1	Unmodified	944.46437	0.46436956	321	O43314	PPIP5K2	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.695	75.062	2	0.045207	65921	160511_QHF_FH_JSI11i_2	48.561	36.656			0.29347	0.27701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29347	0.27701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16087000	13287000	2800400	0	0	0	0	0	0	16087000	13287000	2800400	0	0	0	15309	321	14518	92556	125047	125047			1	
FFDTNTSVLMK	1	Unmodified	1301.6326	0.63257388	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.498	61.976	2	0.0055617	53936	160511_QHF_FH_JSI11i_2	55.084	41.731			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15310	2485	14519	92557	125048	125048			1	
FFEDLEQR	0	Unmodified	1082.5033	0.50327426	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.389	40.923	2	0.044706	35069	160511_QHF_FH_JSI11i_2	47.082	29.046			2.2812	2.2763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2812	2.2763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45274000	16122000	29151000	0	0	0	0	0	0	45274000	16122000	29151000	0	0	0	15311	2989	14520	92558	125049	125049			1	
FFEDLILK	1	Unmodified	1023.5641	0.56408361	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.085	76.452	2	0.024917	67082	160511_QHF_FH_JSI11i_2	53.166	34.436			3.1311	3.0617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1311	3.0617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13569000	3732500	9836800	0	0	0	0	0	0	13569000	3732500	9836800	0	0	0	15312	3133	14521	92559	125050	125050			1	
FFEDYGLFMR	0	Unmodified	1323.5958	0.59579444	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	84.26	80.879	2	9.0107E-34	72916	160511_QHF_FH_JSI12i_2	201.97	176.41			1.0973	1.0512	21.795	11	1	Median	1.4519	1.2398	19.257	2	0	Median	0.83744	0.98449	22.056	3	1	Median	0.97953	1.0091	24.419	3	0	Plateau	1.0973	1.2052	14.994	3	0	Median	2471100000	1186000000	1285100000	445400000	218270000	227130000	582800000	291930000	290870000	773820000	344220000	429600000	669070000	331550000	337520000	15313	2328	14522	92560;92561;92562;92563;92564;92565;92566;92567;92568;92569;92570	125051;125052;125053;125054;125055;125056;125057;125058;125059;125060;125061;125062;125063;125064;125065;125066;125067;125068	125053			17	
FFEDYGLFMR	0	Oxidation (M)	1339.5907	0.59070906	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS		2	0		2									1	1		74.474	73.778	2	0.020193	65486	160511_QHF_FH_JSI10i_2	43.979	39.68			0.78119	0.874	9.833	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76085	0.93693	NaN	1	0	Median	0.80207	0.8153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	209110000	132600000	76508000	0	0	0	82329000	49902000	32427000	126780000	82698000	44081000	0	0	0	15314	2328	14522	92571;92572	125069;125070	125070		1920	2	
FFEEVNDPAK	1	Unmodified	1194.5557	0.55570376	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.28	5	5					3			2	3	3	5	40.48	37.579	2	8.6371E-07	33073	160511_QHF_FH_JSI9i_2	123.86	113.87			0.60414	0.69178	76.244	13	10	Median	0.97271	0.82926	80.462	2	2	Median	0.45082	0.53499	21.925	3	2	Median	0.44647	0.43778	118.68	3	3	Median	0.64715	0.72863	81.321	5	3	Median	2761300000	1320900000	1440400000	201050000	105940000	95113000	570260000	334500000	235760000	1167600000	558190000	609430000	822380000	322280000	500100000	15315	1675	14523	92573;92574;92575;92576;92577;92578;92579;92580;92581;92582;92583;92584;92585	125071;125072;125073;125074;125075;125076;125077;125078;125079;125080;125081;125082;125083	125079			12	
FFEFGSLDQK	1	Unmodified	1216.5764	0.57643921	3692	Q8TB72	PUM2	Pumilio homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		67.159	66.458	2	0.0042173	58939	160511_QHF_FH_JSI10i_2	66.692	45.185			4.3705	4.822	8.8176	2	2	Median	NaN	NaN	NaN	0	0	Median	4.2626	5.1322	NaN	1	1	Median	4.4811	4.5305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204620000	33267000	171350000	0	0	0	92748000	16038000	76711000	111870000	17229000	94638000	0	0	0	15316	3692	14524	92586;92587	125084;125085	125085			2	
FFEGPVTGIFSGYVNSMLQEYAK	1	Unmodified	2583.2356	0.23556218	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.17	6.84		2	1						3	2	1	3		100.61	96.532	3	1.7004E-60	51107	160513_QHF_FH_JSI11Kac_6	195.25	184.1			0.98243	0.93497	18.752	6	3	Median	1.3376	1.1308	15.188	2	1	Median	0.71953	0.86066	NaN	1	0	Median	0.83255	0.79995	19.757	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1848100000	971770000	876300000	511850000	234180000	277670000	548360000	335140000	213220000	787860000	402450000	385410000	0	0	0	15317	1844	14525	92588;92589;92590;92591;92592;92593	125086;125087;125088;125089;125090;125091;125092;125093;125094	125088			9	
FFEGPVTGIFSGYVNSMLQEYAK	1	Oxidation (M)	2599.2305	0.23047681	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	95.34	85.897	3	1.143E-09	46608	160513_QHF_FH_JSI12Kac_6	144.57	132.14			0.19008	0.19809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19008	0.19809	NaN	1	1	Median	111890000	84235000	27656000	0	0	0	0	0	0	0	0	0	111890000	84235000	27656000	15318	1844	14525	92594	125095	125095		1519	1	
FFEHFIEGGR	0	Unmodified	1237.588	0.58800695	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	48.006	47.426	2;3	1.3412E-06	40306	160511_QHF_FH_JSI12i_3	129.1	98.529			2.7857	0.83349	78.782	7	6	Linear	0.70632	0.60261	NaN	1	0	Median	0.63099	0.73402	3.6791	2	2	Median	2.0302	1.9034	116.79	2	2	Median	1.5636	1.6046	90.03	2	2	Median	559210000	231040000	328180000	39139000	23595000	15545000	42815000	25575000	17240000	262010000	98816000	163200000	215250000	83052000	132200000	15319	4077	14526	92595;92596;92597;92598;92599;92600;92601	125096;125097;125098;125099;125100;125101;125102;125103	125102			7	
FFEILSPVYR	0	Unmodified	1269.6758	0.67575932	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.283	83.69	2	0.0045855	73562	160511_QHF_FH_JSI11i_2	65.305	49.011			0.51494	0.50906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51494	0.50906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26559000	13112000	13446000	0	0	0	0	0	0	26559000	13112000	13446000	0	0	0	15320	2229	14527	92602;92603;92604;92605	125104;125105;125106;125107	125106			4	
FFEMIENHPLSTK	1	Unmodified	1591.7705	0.77046434	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.297	58.297	3	0.00060375	51727	160511_QHF_FH_JSI11i_3	65.219	52.018			0.23006	0.21841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23006	0.21841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56647000	41697000	14951000	0	0	0	0	0	0	56647000	41697000	14951000	0	0	0	15321	647	14528	92606	125108	125108			1	
FFENYNQSLEK	1	Unmodified	1417.6514	0.65139506	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	45.262	44.126	2	3.7785E-05	38544	160511_QHF_FH_JSI9i_2	104.22	86.357			1.0548	0.87672	63.486	3	3	Median	1.0548	0.87672	NaN	1	1	Median	0.60008	0.72706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0736	2.3689	NaN	1	1	Median	270610000	94991000	175620000	68787000	24875000	43912000	65397000	31009000	34389000	0	0	0	136430000	39108000	97318000	15322	3117	14529	92607;92608;92609	125109;125110;125111	125110			3	
FFESFGDLSSADAILGNPK	1	Unmodified	2013.9684	0.96837211	72	CON__Q3SX09			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	8	9								3	4	6	4	99.492	99.362	2;3	1.9803E-138	87129	160511_QHF_FH_JSI9i_2	292.22	276.63		+	0.94277	0.98159	48.693	16	8	Median	1.3489	1.1513	71.55	2	1	Median	0.76488	0.89059	63.516	4	1	Median	1.0991	1.085	45.339	6	4	Median	0.81913	0.86291	28.447	4	2	Median	1482100000	541660000	940460000	183510000	67132000	116380000	547760000	163990000	383760000	493970000	191880000	302080000	256880000	118650000	138230000	15323	72	14530	92610;92611;92612;92613;92614;92615;92616;92617;92618;92619;92620;92621;92622;92623;92624;92625;92626	125112;125113;125114;125115;125116;125117;125118;125119;125120;125121;125122;125123;125124;125125;125126;125127;125128;125129;125130;125131;125132;125133;125134;125135;125136;125137;125138;125139;125140;125141;125142;125143;125144;125145	125134			34	
FFETSAK	1	Unmodified	828.40177	0.4017693	1933;1730	P61026;P51153	RAB10;RAB13	Ras-related protein Rab-10;Ras-related protein Rab-13	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		17.108	16.514	2	0.014679	13205	160511_QHF_FH_JSI11i_2	65.803	48.876			2.9275	3.0284	111.01	3	3	Median	4.2677	3.6576	NaN	1	1	Median	0.39239	0.48997	NaN	1	1	Median	2.9275	3.0284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1238000000	580270000	657750000	297760000	63493000	234260000	293460000	189850000	103620000	646800000	326930000	319870000	0	0	0	15324	1933;1730	14531	92627;92628;92629	125146;125147;125148	125147			3	
FFEVILIDPFHK	1	Unmodified	1503.8126	0.81258715	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.76		8	7						13	7	8	5	8	97.046	93.216	2;3	2.9862E-27	44872	160513_QHF_FH_JSI12Kac_6	194.54	147.34			0.86312	0.86044	75.486	28	13	Median	0.9924	0.84419	66.975	7	4	Median	0.78668	0.92727	90.359	8	5	Median	0.78268	0.76092	20.296	5	0	Median	1.0329	1.1267	95.474	8	4	Median	32608000000	16204000000	16404000000	5483200000	2677600000	2805600000	13002000000	6617800000	6384500000	6299600000	3286300000	3013400000	7822400000	3622100000	4200300000	15325	1951	14532	92630;92631;92632;92633;92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644;92645;92646;92647;92648;92649;92650;92651;92652;92653;92654;92655;92656;92657	125149;125150;125151;125152;125153;125154;125155;125156;125157;125158;125159;125160;125161;125162;125163;125164;125165;125166;125167;125168;125169;125170;125171;125172;125173;125174;125175;125176;125177;125178;125179;125180;125181;125182;125183;125184;125185;125186;125187;125188;125189;125190	125184			41	
FFFDPVRK	1	Unmodified	1054.56	0.56000128	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	53.363	52.521	3	0.00068879	46342	160511_QHF_FH_JSI11i_3	81.296	74.401			0.90249	0.78693	15.349	4	0	Median	0.92661	0.74417	NaN	1	0	Median	0.62365	0.71257	NaN	1	0	Median	0.87899	0.83215	NaN	1	0	Median	0.98362	1.0051	NaN	1	0	Median	640720000	308580000	332130000	226560000	86838000	139720000	152210000	88803000	63407000	164480000	77739000	86739000	97470000	55205000	42265000	15326	4976	14533	92658;92659;92660;92661	125191;125192;125193;125194;125195	125192			5	
FFFGDAPASLDAFVFSYLALLLQAK	1	Unmodified	2750.436	0.43597655	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.81	100.09	3	1.805E-53	59311	160513_QHF_FH_JSI10Kac_6	188.19	180.57			0.81126	0.95489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81126	0.95489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170380000	77171000	93206000	0	0	0	170380000	77171000	93206000	0	0	0	0	0	0	15327	2429	14534	92662	125196	125196			1	
FFGDSAASMAIK	1	Unmodified	1243.5907	0.59070906	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	2	1	2	56.615	55.437	2	0.00013275	47535	160511_QHF_FH_JSI12i_2	101.38	88.003			0.53002	0.63977	66.907	7	5	Median	0.67751	0.56774	53.788	2	1	Median	0.57608	0.68098	8.8301	2	1	Median	0.41116	0.41845	NaN	1	1	Median	0.87624	0.96357	135.94	2	2	Median	1189300000	676620000	512710000	219360000	115540000	103820000	262530000	158490000	104040000	317750000	196790000	120950000	389700000	205800000	183900000	15328	5633	14535	92663;92664;92665;92666;92667;92668;92669	125197;125198;125199;125200;125201;125202;125203;125204;125205;125206	125198			10	
FFGGYVPEMVLTPDDQR	0	Unmodified	1969.9244	0.9243988	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	91.95	91.439	2;3	4.0912E-11	80433	160511_QHF_FH_JSI11i_2	183.79	170.81			0.86155	0.89027	43.144	8	1	Median	0.97558	0.82596	11.008	2	1	Median	0.42085	0.52268	91.373	2	0	Median	0.89542	0.90101	8.0982	2	0	Median	0.86002	0.94438	8.7495	2	0	Median	478100000	264830000	213260000	69683000	35581000	34102000	127690000	84535000	43158000	158390000	81769000	76624000	122330000	62949000	59381000	15329	1872	14536	92670;92671;92672;92673;92674;92675;92676;92677;92678	125207;125208;125209;125210;125211;125212;125213;125214;125215;125216;125217;125218;125219;125220	125217			14	
FFGNLMDASK	1	Unmodified	1128.5274	0.52738052	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							3	3	3	2	56.829	55.928	2	0.00014552	47911	160511_QHF_FH_JSI12i_2	96.665	81.033			0.48485	0.47591	111.28	11	11	Median	0.48485	0.39431	125.99	3	3	Median	0.24863	0.30581	141.47	3	3	Median	1.841	1.8215	127.21	3	3	Median	1.0111	1.1237	121.5	2	2	Median	7317800000	3774500000	3543300000	1220800000	551010000	669820000	1729600000	904130000	825460000	2451100000	1347900000	1103100000	1916300000	971400000	944850000	15330	1460	14537	92679;92680;92681;92682;92683;92684;92685;92686;92687;92688;92689	125221;125222;125223;125224;125225;125226;125227;125228;125229;125230;125231;125232	125224			12	
FFGNSWAETYR	0	Unmodified	1376.6149	0.61494998	338	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	60.044	56.644	2	1.3555E-09	50293	160511_QHF_FH_JSI11i_3	134.84	104.59			1.0171	1.0446	25.606	6	1	Median	1.2445	1.0222	28	2	1	Median	1.1261	1.3443	28.047	2	0	Median	1.0472	0.98977	NaN	1	0	Median	0.84602	0.84323	NaN	1	0	Median	566570000	311250000	255320000	59725000	22729000	36995000	90159000	46081000	44078000	190940000	93949000	96993000	225740000	148490000	77252000	15331	338	14538	92690;92691;92692;92693;92694;92695	125233;125234;125235;125236;125237;125238;125239;125240;125241;125242	125233			10	
FFGPLSSNTLHQVASYLCLLPTLPK	1	Unmodified	2802.4779	0.47785814	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.657	91.937	3	1.712E-18	53582	160513_QHF_FH_JSI10Kac_6	174.4	153.51			0.43449	0.49563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43449	0.49563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83849000	60458000	23391000	0	0	0	83849000	60458000	23391000	0	0	0	0	0	0	15332	408	14539	92696	125243	125243			1	
FFGTEDHAWIK	1	Unmodified	1349.6404	0.64043645	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	52.907	51.951	3	0.052594	44543	160511_QHF_FH_JSI11i_2	37.144	29.233			0.79361	0.84791	18.191	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74605	0.74557	NaN	1	0	Median	0.84419	0.9643	NaN	1	0	Median	120630000	70053000	50578000	0	0	0	0	0	0	67181000	36250000	30931000	53450000	33803000	19647000	15333	2827	14540	92697;92698	125244	125244			0	
FFHDILHTK	1	Unmodified	1156.6029	0.60292873	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.371	38.281	4	0.00045885	32530	160511_QHF_FH_JSI12i_3	74.376	55.105			0.47181	0.46743	13.738	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45683	0.42416	NaN	1	1	Median	0.48728	0.51512	NaN	1	1	Median	37622000	26162000	11460000	0	0	0	0	0	0	16183000	12606000	3577700	21438000	13556000	7882400	15334	3832	14541	92699;92700	125245;125246	125246			2	
FFHETEAPRPK	1	Unmodified	1357.6779	0.67788459	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			6								3	3		19.114	18.539	2;3;4	0.00018364	15056	160511_QHF_FH_JSI10i_3	78.653	69.22			0.412	0.44118	17.138	4	4	Median	NaN	NaN	NaN	0	0	Median	0.40078	0.474	17.698	2	2	Median	0.43371	0.40816	18.553	2	2	Median	NaN	NaN	NaN	0	0	Median	545610000	380320000	165280000	0	0	0	71066000	45496000	25570000	474540000	334830000	139710000	0	0	0	15335	1883	14542	92701;92702;92703;92704;92705;92706	125247;125248;125249;125250;125251;125252	125252			6	
FFHLADLFLSSSHLPAYLVAAFAK	1	Unmodified	2664.4104	0.4104305	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									9	2	4	1	2	99.42	91.699	3;4	6.9047E-150	52009	160513_QHF_FH_JSI9Kac_6	260.34	246.61			0.94766	0.91291	63.316	9	4	Median	0.88114	0.76243	10.014	2	0	Median	0.89134	1.0715	100.78	4	4	Median	1.1021	1.0798	NaN	1	0	Median	0.93718	0.99049	11.535	2	0	Median	2409900000	1210600000	1199300000	611260000	279590000	331670000	1538800000	799410000	739420000	41814000	18839000	22975000	217990000	112720000	105280000	15336	4471	14543	92707;92708;92709;92710;92711;92712;92713;92714;92715	125253;125254;125255;125256;125257;125258;125259;125260;125261	125255			9	
FFHLAFEEEFGR	0	Unmodified	1527.7147	0.71466402	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	79.702	79.621	2;3	1.905E-05	69299	160511_QHF_FH_JSI12i_3	93.345	91.802			1.5208	1.4156	21.759	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5934	1.4826	6.5423	2	2	Median	1.0298	1.0258	NaN	1	0	Median	192020000	77992000	114030000	0	0	0	0	0	0	87926000	31201000	56725000	104100000	46791000	57305000	15337	2391	14544	92716;92717;92718	125262;125263;125264;125265;125266;125267	125267			6	
FFHLIQLGDGSYNLNFYK	1	Unmodified	2175.0789	0.078925608	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				88.578	79.941	3	9.0456E-08	44357	160513_QHF_FH_JSI9Kac_6	161.24	146.67			0.31776	0.27118	NaN	1	1	Median	0.31776	0.27118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99383000	69751000	29631000	99383000	69751000	29631000	0	0	0	0	0	0	0	0	0	15338	4555	14545	92719	125268	125268			1	
FFHPKPVPGFQVAYVVFQK	2	Unmodified	2234.2041	0.20406654	5568	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	82.825	74.808	3;4	2.3233E-44	42002	160513_QHF_FH_JSI10Kac_6	178.03	153.75			0.84586	0.79129	64.593	10	6	Median	0.87967	0.7383	24.373	3	2	Median	0.2458	0.28915	124.01	3	2	Plateau	1.4387	1.371	29.261	2	1	Median	0.72868	0.76715	14.183	2	1	Median	1265100000	699200000	565880000	287090000	134080000	153020000	581540000	352810000	228730000	228630000	98994000	129630000	167810000	113310000	54494000	15339	5568	14546	92720;92721;92722;92723;92724;92725;92726;92727;92728;92729	125269;125270;125271;125272;125273;125274;125275;125276;125277;125278;125279	125277			11	
FFHSLLGTNAK	1	Unmodified	1233.6506	0.6506072	1696	P50135	HNMT	Histamine N-methyltransferase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			4							2			2	44.619	43.698	2;3	0.00014327	36076	160511_QHF_FH_JSI9i_3	83.081	65.861			0.17068	0.13864	NaN	1	1	Median	0.17068	0.13864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51117000	42027000	9090200	38387000	29297000	9090200	0	0	0	0	0	0	12730000	12730000	0	15340	1696	14547	92730;92731;92732;92733	125280;125281;125282;125283;125284	125281			5	
FFHSNQK	1	Unmodified	906.4348	0.43480077	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	4	1	1	6.173	5.8284	2;3	0.002307	3791	160511_QHF_FH_JSI9i_3	80.462	72.531			1.4163	1.6075	68.592	7	6	Median	5.7318	4.6671	NaN	1	1	Median	1.5254	1.7454	43.47	4	4	Median	0.94431	0.87789	NaN	1	1	Median	0.65251	0.65752	NaN	1	0	Median	1235600000	610310000	625250000	122310000	33013000	89299000	593810000	272310000	321500000	157150000	63289000	93863000	362290000	241700000	120590000	15341	2592	14548	92734;92735;92736;92737;92738;92739;92740	125285;125286;125287;125288;125289;125290;125291	125290			7	
FFIDQSK	1	Unmodified	883.44397	0.44396847	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	3	2	2	36.768	35.945	2	0.0060804	32147	160511_QHF_FH_JSI11i_1	92.467	66.64			1.3945	1.3688	109.46	10	6	Median	1.1723	0.95884	69.787	3	2	Median	1.6587	1.9539	198.32	3	2	Median	1.4088	1.4183	55.617	2	1	Median	1.3649	1.4754	86.808	2	1	Median	3589700000	1834600000	1755100000	914050000	447360000	466690000	993440000	580230000	413210000	1007800000	491220000	516610000	674370000	315810000	358560000	15342	2328	14549	92741;92742;92743;92744;92745;92746;92747;92748;92749;92750	125292;125293;125294;125295;125296;125297;125298;125299;125300;125301;125302;125303	125292			12	
FFIDQSKK	2	Acetyl (K)	1053.5495	0.54949617	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	1	2	52.998	42.417	2	0.020693	24207	160513_QHF_FH_JSI12Kac_4	90.657	79.588			0.92658	0.96342	66.491	4	1	Median	NaN	NaN	NaN	0	0	Median	2.7432	3.2814	NaN	1	1	Median	0.94452	0.93868	NaN	1	0	Median	0.79336	0.86201	19.407	2	0	Median	55355000	27560000	27795000	0	0	0	4902700	1478800	3423900	16191000	9170600	7020500	34261000	16911000	17350000	15343	2328	14550	92751;92752;92753;92754	125304;125305	125305	2422		2	
FFIEEMIR	0	Unmodified	1083.5423	0.54230231	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	82.098	81.262	2	0.0030879	71418	160511_QHF_FH_JSI11i_2	75.189	32.725			0.89657	1.0959	43.353	5	4	Median	0.69202	0.58719	NaN	1	1	Median	0.89657	1.0959	NaN	1	1	Median	1.3168	1.3391	NaN	1	0	Median	1.1444	1.2746	52.875	2	2	Median	195220000	96864000	98359000	23379000	11411000	11968000	45008000	21442000	23566000	62794000	33674000	29120000	64042000	30337000	33705000	15344	2533	14551	92755;92756;92757;92758;92759	125306;125307;125308;125309;125310;125311	125310			6	
FFIFALTPQQVR	0	Unmodified	1465.8082	0.80817048	584	O75928	PIAS2	E3 SUMO-protein ligase PIAS2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.822	82.513	2	2.0096E-16	44169	160513_QHF_FH_JSI12Kac_6	145.92	118.18			1.0067	1.0276	37.04	4	0	Median	0.63187	0.53943	NaN	1	0	Median	1.0954	1.2642	NaN	1	0	Median	1.0784	1.0522	NaN	1	0	Median	0.93973	1.0036	NaN	1	0	Median	303700000	166950000	136750000	50817000	22640000	28177000	115310000	70203000	45103000	93640000	43628000	50012000	43938000	30481000	13457000	15345	584	14552	92760;92761;92762;92763	125312;125313;125314;125315;125316;125317;125318	125316			7	
FFIGQFSDDR	0	Unmodified	1230.5669	0.56693715	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		65.754	64.757	2	5.5871E-05	54162	160511_QHF_FH_JSI10i_3	91.867	80.019			0.87716	0.81898	25.05	3	0	Plateau	1.6883	1.3515	NaN	1	0	Median	0.8864	1.044	NaN	1	0	Median	0.87716	0.81898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	195740000	107560000	88181000	24376000	8847300	15528000	54169000	29549000	24620000	117190000	69160000	48033000	0	0	0	15346	1778	14553	92764;92765;92766	125319;125320;125321	125320			3	
FFIGTSVSTFSFR	0	Unmodified	1494.7507	0.75071518	5517	Q9Y2G5	POFUT2	GDP-fucose protein O-fucosyltransferase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.907	80.206	2	0.00084147	44992	160513_QHF_FH_JSI10Kac_6	79.659	54			1.2666	1.456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2666	1.456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114640000	66476000	48162000	0	0	0	114640000	66476000	48162000	0	0	0	0	0	0	15347	5517	14554	92767	125322;125323	125323			2	
FFIHYPYCYGYWK	1	Unmodified	1842.8228	0.82283426	3320	Q86UA1	PRPF39	Pre-mRNA-processing factor 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.75	72.493	3	1.0964E-12	38090	160513_QHF_FH_JSI12Kac_6	119.27	114.88			0.64232	0.90934	20.292	4	0	Linear	1.2113	1.0354	NaN	1	0	Median	0.66167	0.79859	NaN	1	0	Median	0.79437	0.7471	NaN	1	0	Median	1.0849	1.1408	NaN	1	0	Median	564250000	279170000	285080000	61892000	23226000	38666000	284210000	150600000	133610000	148620000	74147000	74469000	69528000	31191000	38337000	15348	3320	14555	92768;92769;92770;92771	125324;125325;125326;125327;125328;125329;125330;125331	125328			8	
FFILYEHGLLR	0	Unmodified	1406.7711	0.77105669	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	82.022	74.535	3	1.198E-11	40498	160513_QHF_FH_JSI11Kac_6	111.86	77.965			0.80426	0.94668	298.43	2	2	Median	NaN	NaN	NaN	0	0	Median	0.80426	0.94668	298.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	313760000	144510000	169250000	0	0	0	252840000	144510000	108330000	41573000	0	41573000	19347000	0	19347000	15349	3165	14556	92772;92773;92774;92775	125332;125333;125334;125335	125332			4	
FFKGYGK	2	Acetyl (K)	887.45414	0.45413923	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.977	31.405	2	0.04806	17301	160513_QHF_FH_JSI11Kac_6	73.039	36.452			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15350	2263	14557	92776	125336	125336			1	
FFLGDLCSR	0	Unmodified	1113.5277	0.52771487	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	68.558	67.66	2	0.0070362	60087	160511_QHF_FH_JSI10i_2	62.546	54.128			1.1627	1.2613	30.297	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.97124	1.1861	NaN	1	1	Median	0.69634	0.72566	NaN	1	1	Median	1.1627	1.2613	NaN	1	0	Median	198880000	99908000	98974000	0	0	0	76439000	40206000	36233000	77186000	38575000	38610000	45257000	21127000	24131000	15351	2701	14558	92777;92778;92779	125337;125338;125339;125340;125341	125341			5	
FFLGNQFGDSQQLR	0	Unmodified	1655.8056	0.80560429	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	4	4	2	71.028	70.378	2	0.00010303	62060	160511_QHF_FH_JSI9i_2	108.7	96.081			0.75245	0.83379	38.683	11	10	Median	0.96371	0.83379	NaN	1	0	Median	0.67866	0.78054	35.657	4	4	Median	0.92239	0.83552	53.054	4	4	Median	0.78428	0.80905	50.787	2	2	Median	266060000	142440000	123630000	23851000	10216000	13635000	76148000	46854000	29293000	105010000	50258000	54751000	61055000	35107000	25948000	15352	2199	14559	92780;92781;92782;92783;92784;92785;92786;92787;92788;92789;92790	125342;125343;125344;125345;125346;125347;125348;125349;125350;125351;125352;125353	125346			12	
FFLLCGQYSR	0	Unmodified	1289.6227	0.62267789	3646	Q8NEZ3	WDR19	WD repeat-containing protein 19	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				10.796	10.234	3	0.060266	7963	160511_QHF_FH_JSI9i_2	9.6551	4.7609			1.2415	1.0815	NaN	1	0	Median	1.2415	1.0815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	275730000	120710000	155020000	275730000	120710000	155020000	0	0	0	0	0	0	0	0	0	15353	3646	14560	92791	125354	125354			1	
FFLLENVR	0	Unmodified	1036.5706	0.57056597	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	74.622	74.101	2	0.0027441	64375	160511_QHF_FH_JSI12i_3	85.265	74.392			0.37525	0.42938	31.713	2	2	Median	NaN	NaN	NaN	0	0	Median	0.27643	0.34312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5094	0.53731	NaN	1	1	Median	79154000	55316000	23838000	0	0	0	30522000	21198000	9324400	0	0	0	48632000	34118000	14514000	15354	1273	14561	92792;92793	125355;125356	125356			2	
FFLNQYSASVHSLDGFR	0	Unmodified	1986.9588	0.95881047	333	O43427	FIBP	Acidic fibroblast growth factor intracellular-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			81.269	79.939	3	4.1018E-05	66963	160511_QHF_FH_JSI10i_3	73.208	66.317			1.1499	1.1094	12.647	2	0	Median	1.5288	1.2131	NaN	1	0	Median	0.86494	1.0145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57036000	22896000	34140000	30018000	9259300	20758000	27019000	13637000	13382000	0	0	0	0	0	0	15355	333	14562	92794;92795	125357;125358;125359	125358			3	
FFLQDPQSQELDVQVK	1	Unmodified	1919.9629	0.9628928	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	2	2	4	77.137	76.557	2;3	1.206E-30	69303	160511_QHF_FH_JSI10i_1	220.23	195.37			0.75604	0.78849	23.245	9	6	Median	0.69306	0.59988	44.824	2	2	Median	0.61313	0.72009	12.832	2	0	Median	0.80786	0.77471	23.003	2	1	Median	0.78772	0.83075	10.013	3	3	Median	368410000	220040000	148370000	46094000	30586000	15507000	141480000	99003000	42478000	79196000	37592000	41603000	101640000	52855000	48785000	15356	4399	14563	92796;92797;92798;92799;92800;92801;92802;92803;92804;92805	125360;125361;125362;125363;125364;125365;125366;125367;125368;125369;125370;125371;125372	125365			13	
FFLQGIQLNTILPDAR	0	Unmodified	1845.0149	0.014868788	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	3	2	3	96.459	90.34	2;3	1.7289E-74	48264	160513_QHF_FH_JSI9Kac_6	255.23	212.68			0.96295	0.9335	21.948	11	0	Median	1.4248	1.2034	17.436	3	0	Median	0.9905	1.1578	18.32	3	0	Plateau	1.0094	0.96189	5.374	2	0	Median	0.83656	0.86334	28.473	3	0	Median	1731400000	926630000	804780000	320470000	138510000	181960000	617100000	347990000	269120000	484480000	279360000	205120000	309360000	160780000	148580000	15357	996	14564	92806;92807;92808;92809;92810;92811;92812;92813;92814;92815;92816	125373;125374;125375;125376;125377;125378;125379;125380;125381;125382;125383;125384	125377			10	
FFLQGIQLNTILPDARDPAFK	1	Unmodified	2403.2951	0.29506639	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.63		3	4						5	3	4	3	2	97.933	94.624	3;4	1.882E-59	49612	160513_QHF_FH_JSI10Kac_6	195.39	180.47			1.0205	1.0675	16.357	12	0	Median	1.1705	0.98471	26.191	3	0	Median	0.90787	1.0679	12.438	4	0	Median	1.287	1.1623	10.031	3	0	Plateau	1.0694	1.1023	10.235	2	0	Median	10585000000	5273800000	5311000000	2077600000	1053900000	1023800000	3805400000	2205300000	1600100000	3443800000	1435600000	2008200000	1257900000	579010000	678920000	15358	996	14565	92817;92818;92819;92820;92821;92822;92823;92824;92825;92826;92827;92828	125385;125386;125387;125388;125389;125390;125391;125392;125393;125394;125395;125396;125397;125398;125399;125400;125401;125402;125403;125404;125405	125403			21	
FFLSHPAYR	0	Unmodified	1136.5767	0.57671398	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	48.699	39.393	3	2.0808E-05	21545	160513_QHF_FH_JSI11Kac_6	84.615	76.965			0.93733	1.0366	17.316	4	2	Median	1.4361	1.2411	NaN	1	0	Median	0.91048	1.0503	NaN	1	1	Median	0.81837	0.81453	NaN	1	1	Median	0.96497	1.023	NaN	1	0	Median	229190000	113720000	115470000	48442000	16946000	31496000	115230000	63491000	51740000	34535000	17191000	17344000	30978000	16091000	14887000	15359	1711	14566	92829;92830;92831;92832;92833	125406;125407;125408;125409;125410	125406			4	
FFLSLYGHK	1	Unmodified	1110.5862	0.58621603	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.03			5						11	5	4	3	4	67.37	60.988	2;3	5.2971E-08	32344	160513_QHF_FH_JSI9Kac_6	121.05	105.79			0.95998	0.96609	43.909	16	10	Median	0.9281	0.78669	72.619	5	4	Median	0.96729	1.131	16.96	4	2	Median	1.3524	1.295	24.366	3	2	Median	0.83721	0.86407	27.113	4	2	Median	1247300000	643520000	603790000	265710000	123830000	141870000	321180000	165080000	156110000	282480000	148620000	133860000	377940000	205990000	171950000	15360	5451	14567	92834;92835;92836;92837;92838;92839;92840;92841;92842;92843;92844;92845;92846;92847;92848;92849	125411;125412;125413;125414;125415;125416;125417;125418;125419;125420;125421;125422;125423;125424;125425;125426;125427;125428;125429;125430;125431;125432;125433	125421			23	
FFLSQLMLAPPR	0	Unmodified	1418.7744	0.77442751	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				92.078	83.3	2	0.0013326	46745	160513_QHF_FH_JSI9Kac_6	82.831	64.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15361	5384	14568	92850	125434	125434			1	
FFLSSGLIDK	1	Unmodified	1125.607	0.60701105	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	3.75		5	6						1	3	3	3	3	75.223	73.687	2	0.0006401	64863	160511_QHF_FH_JSI11i_2	85.744	64.797			1.3125	1.2986	67.07	12	12	Median	2.1669	1.8435	87.144	3	3	Median	0.71656	0.81985	83.734	3	3	Median	1.0741	1.0463	56.732	3	3	Median	1.7196	1.8874	74.588	3	3	Median	987410000	468900000	518510000	132770000	60044000	72729000	178570000	91777000	86788000	241440000	117660000	123780000	434630000	199420000	235220000	15362	4423	14569	92851;92852;92853;92854;92855;92856;92857;92858;92859;92860;92861;92862	125435;125436;125437;125438;125439;125440;125441;125442;125443;125444;125445;125446	125443			12	
FFLTDNLVFDSLYDLITHYQQVPLR	0	Unmodified	3056.5648	0.56475889	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.33	96.613	3;4	1.503E-172	57125	160513_QHF_FH_JSI10Kac_6	276.85	267.27			0.93681	1.1137	13.971	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93681	1.1137	13.971	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	556310000	273790000	282520000	0	0	0	556310000	273790000	282520000	0	0	0	0	0	0	15363	1152	14570	92863;92864	125447;125448;125449	125448			3	
FFLVFSK	1	Unmodified	886.49528	0.49527576	1724	P51003;Q9BWT3	PAPOLA;PAPOLG	Poly(A) polymerase alpha;Poly(A) polymerase gamma	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	1	3	80.196	74.606	2	0.0035032	39685	160513_QHF_FH_JSI11Kac_6	92.467	78.464			2.5643	2.8893	110.29	6	6	Median	1.9253	1.6217	NaN	1	1	Median	2.4221	2.8979	NaN	1	1	Median	3.5355	3.3978	NaN	1	1	Median	2.7149	2.8807	159.91	3	3	Median	473200000	165640000	307570000	140050000	55108000	84939000	96707000	40223000	56484000	122390000	29829000	92564000	114060000	40476000	73582000	15364	1724	14571	92865;92866;92867;92868;92869;92870	125450;125451;125452;125453;125454;125455	125450			6	
FFMGNQVLK	1	Unmodified	1082.5583	0.55828672	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		6	8						2	5	3	5	3	58.362	56.458	2	1.0916E-06	48654	160511_QHF_FH_JSI12i_3	144.83	126.1			0.76569	0.74935	122.13	16	14	Median	0.77189	0.65705	138.33	5	5	Median	0.37228	0.42626	165.24	3	3	Median	1.065	1.0149	115.22	5	4	Median	0.75954	0.85463	129.73	3	2	Median	8519400000	4226400000	4292900000	1490300000	654820000	835490000	1448100000	827440000	620670000	3338100000	1707900000	1630200000	2242900000	1036300000	1206600000	15365	1024	14572	92871;92872;92873;92874;92875;92876;92877;92878;92879;92880;92881;92882;92883;92884;92885;92886	125456;125457;125458;125459;125460;125461;125462;125463;125464;125465;125466;125467;125468;125469;125470;125471;125472;125473;125474;125475;125476;125477;125478;125479;125480;125481;125482;125483;125484	125484			29	
FFMGNQVLK	1	Oxidation (M)	1098.5532	0.55320134	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	40.644	40.433	2	0.012789	34550	160511_QHF_FH_JSI12i_3	72.138	57.981			0.47275	0.46153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47275	0.46153	NaN	1	1	Median	45269000	35097000	10172000	0	0	0	0	0	0	0	0	0	45269000	35097000	10172000	15366	1024	14572	92887	125485	125485		621	1	
FFMGTVVK	1	Unmodified	927.48881	0.48881017	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.63		7	7						4	6	5	3	4	56.35	53.574	2	0.0025445	45995	160511_QHF_FH_JSI12i_2	87.323	66.169			1.4956	1.5548	100.65	18	17	Median	1.3475	1.1301	98.719	6	6	Median	2.093	2.4313	111.21	5	5	Median	1.2354	1.1863	120.97	3	2	Median	1.0201	1.0824	121.3	4	4	Median	4148500000	1900500000	2248100000	948470000	384180000	564290000	1092000000	558910000	533060000	968610000	438290000	530320000	1139500000	519090000	620390000	15367	1604	14573	92888;92889;92890;92891;92892;92893;92894;92895;92896;92897;92898;92899;92900;92901;92902;92903;92904;92905	125486;125487;125488;125489;125490;125491;125492;125493;125494;125495;125496;125497;125498;125499;125500;125501;125502;125503	125487			18	
FFMMMTFPASYPVSK	1	Unmodified	1782.8183	0.81834251	4786	Q9H8M5	CNNM2	Metal transporter CNNM2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				91.945	83.166	2	8.3608E-10	46657	160513_QHF_FH_JSI9Kac_6	115.83	92.23			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15368	4786	14574	92906	125504	125504			1	
FFMSLLNFLNNFQTAK	1	Oxidation (M)	1949.971	0.97095506	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		97.74	88.328	2	4.1774E-63	50490	160513_QHF_FH_JSI11Kac_6	210.41	187.83			0.81748	0.75997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81748	0.75997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54094000	30653000	23441000	0	0	0	0	0	0	54094000	30653000	23441000	0	0	0	15369	3196	14575	92907	125505	125505		2213	1	
FFMSLLNFLNNFQTAK	1	Unmodified	1933.976	0.97604044	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	1	2	99.473	90.751	2;3	3.0142E-246	49620	160513_QHF_FH_JSI12Kac_6	362.96	326.54			0.73573	0.62711	165.02	5	4	Median	0.47307	0.40526	61.742	2	1	Median	0.013993	0.016606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76281	0.81006	2.4036	2	2	Median	970370000	753190000	217170000	379300000	263130000	116170000	217880000	214560000	3318200	147520000	147520000	0	225670000	127980000	97682000	15370	3196	14575	92908;92909;92910;92911;92912;92913	125506;125507;125508;125509;125510;125511	125510			6	
FFNANQWADIFQASGAK	1	Unmodified	1913.906	0.90604662	4427	Q9BTY2	FUCA2	Plasma alpha-L-fucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	98.787	98.754	2;3	2.0898E-10	87737	160511_QHF_FH_JSI11i_3	164.81	138.69			0.68724	0.83244	51.113	5	5	Median	NaN	NaN	NaN	0	0	Median	0.68724	0.83244	NaN	1	1	Median	1.0162	0.95886	66.45	2	2	Median	0.96937	0.95771	76.653	2	2	Median	108790000	56035000	52757000	0	0	0	5637000	3633200	2003800	37967000	19300000	18667000	65189000	33103000	32086000	15371	4427	14576	92914;92915;92916;92917;92918;92919	125512;125513;125514;125515;125516;125517;125518;125519	125512			8	
FFNEVFK	1	Unmodified	929.4647	0.46470391	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.711	53.193	2	0.024235	45886	160511_QHF_FH_JSI11i_2	58.167	37.885			2.351	2.3603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.351	2.3603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74340000	28302000	46039000	0	0	0	0	0	0	74340000	28302000	46039000	0	0	0	15372	1240	14577	92920	125520	125520			1	
FFNQNIMSYITAK	1	Unmodified	1575.7755	0.77554972	2980	Q5VSL9	STRIP1	Striatin-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	90.394	89.814	2	2.3707E-06	77902	160511_QHF_FH_JSI12i_3	121.08	96.221			0.65365	0.59033	67.085	6	6	Median	0.9927	0.84546	100.13	2	2	Median	0.2792	0.32387	NaN	1	1	Median	0.87865	0.83674	NaN	1	1	Median	0.62874	0.6432	74.882	2	2	Median	124670000	67497000	57173000	20978000	9172500	11806000	12988000	9533600	3454800	36311000	15606000	20705000	54392000	33185000	21207000	15373	2980	14578	92921;92922;92923;92924;92925;92926	125521;125522;125523;125524;125525;125526	125525			6	
FFNSSSFAK	1	Unmodified	1033.4869	0.48689592	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	37.858	37.749	2	0.00044726	32028	160511_QHF_FH_JSI12i_3	90.37	72.334			0.32601	0.31098	153.53	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32601	0.31098	NaN	1	1	Median	1.0716	1.1241	190.08	2	2	Median	123670000	60209000	63457000	0	0	0	0	0	0	36577000	26491000	10086000	87089000	33718000	53370000	15374	1305	14579	92927;92928;92929	125527;125528;125529	125528			3	
FFNTHQLK	1	Unmodified	1033.5345	0.53451481	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				23.71	22.405	3	0.036698	18004	160511_QHF_FH_JSI9i_3	30.687	20.456			7.4624	5.9925	NaN	1	1	Median	7.4624	5.9925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24709000	5460700	19248000	24709000	5460700	19248000	0	0	0	0	0	0	0	0	0	15375	2554	14580	92930	125530	125530			1	
FFNVLTTNTDGK	1	Unmodified	1355.6721	0.67213051	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.74	6.37		5	5				1	7	5	7	5	6	5	64.269	57.66	2	2.5084E-07	50297	160511_QHF_FH_JSI11i_2	112.15	81.074			1.9675	2.052	85.759	16	16	Median	2.2511	1.9632	53.212	3	3	Plateau	1.6352	1.9427	16.869	4	4	Median	1.9701	1.9817	111.83	4	4	Median	1.856	2.0279	107.97	5	5	Median	749120000	249470000	499650000	166920000	40930000	125990000	192170000	76660000	115510000	321420000	103940000	217480000	68617000	27936000	40681000	15376	3891	14581	92931;92932;92933;92934;92935;92936;92937;92938;92939;92940;92941;92942;92943;92944;92945;92946;92947;92948;92949;92950;92951;92952;92953	125531;125532;125533;125534;125535;125536;125537;125538;125539;125540;125541;125542;125543;125544;125545;125546;125547;125548;125549;125550;125551;125552;125553	125541			23	
FFNVLTTNTDGKIEFISTMEGYK	2	Unmodified	2654.2938	0.29380534	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	100.64	100.66	3	1.2467E-19	87227	160511_QHF_FH_JSI12i_3	140.64	132.93			0.50604	0.50874	97.836	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50604	0.50874	97.836	2	2	Median	156240000	111920000	44320000	0	0	0	0	0	0	0	0	0	156240000	111920000	44320000	15377	3891	14582	92954;92955	125554;125555	125554			2	
FFNYVPSGIR	0	Unmodified	1198.6135	0.61349341	3954	Q969X6	CIRH1A	Cirhin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.023	61.023	2	0.054145	54211	160511_QHF_FH_JSI11i_3	42.311	28.193			2.0397	1.8907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0397	1.8907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38578000	12698000	25880000	0	0	0	0	0	0	38578000	12698000	25880000	0	0	0	15378	3954	14583	92956	125556	125556			1	
FFPASADR	0	Unmodified	909.43447	0.43446642	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	6	6	4	29.952	25.44	2	2.0121E-05	22561	160511_QHF_FH_JSI10i_2	139.31	87.082			0.97632	1.0433	14.478	20	3	Median	1.2436	1.047	2.6128	4	0	Median	0.84517	0.99913	18.902	6	2	Median	0.98032	0.96425	12.912	6	1	Median	1.0036	1.0723	14.841	4	0	Median	14650000000	7286900000	7363200000	2076100000	857900000	1218200000	3011600000	1656300000	1355300000	5560700000	2871700000	2689000000	4001600000	1900900000	2100700000	15379	867	14584	92957;92958;92959;92960;92961;92962;92963;92964;92965;92966;92967;92968;92969;92970;92971;92972;92973;92974;92975;92976	125557;125558;125559;125560;125561;125562;125563;125564;125565;125566;125567;125568;125569;125570;125571;125572;125573;125574;125575;125576;125577;125578;125579;125580;125581;125582;125583;125584;125585;125586;125587;125588;125589;125590;125591;125592	125583			36	
FFPASFPNR	0	Unmodified	1081.5345	0.53451481	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	55.646	54.794	2	8.6075E-06	45848	160511_QHF_FH_JSI10i_3	112.17	91.616			0.81766	0.82215	8.5121	5	2	Median	1.0264	0.82032	NaN	1	0	Median	0.6598	0.79209	5.2674	2	0	Median	1.0195	0.96273	NaN	1	1	Median	0.81766	0.82729	NaN	1	1	Median	965180000	500090000	465090000	260100000	122860000	137230000	342250000	197580000	144680000	192130000	92808000	99317000	170700000	86842000	83862000	15380	3712	14585	92977;92978;92979;92980;92981;92982;92983	125593;125594;125595;125596;125597;125598;125599;125600;125601	125596			9	
FFPEDVSEELIQEITQR	0	Unmodified	2079.0161	0.01605058	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	102.1	102.01	2;3	1.005E-97	87896	160511_QHF_FH_JSI12i_2	257.2	230.57			0.9708	1.0699	7.7022	9	1	Median	1.1435	0.97862	9.0888	2	0	Median	0.91051	1.1222	5.0343	2	0	Median	1.0457	1.0539	10.638	2	1	Median	0.96617	1.0699	3.9927	3	0	Plateau	2468100000	1225200000	1242800000	410540000	175790000	234750000	460580000	254690000	205890000	686220000	336070000	350160000	910730000	458690000	452040000	15381	1426	14586	92984;92985;92986;92987;92988;92989;92990;92991;92992	125602;125603;125604;125605;125606;125607;125608	125603			6	
FFPFGLVQLSSDLSK	1	Unmodified	1683.8872	0.88720866	4827	Q9HAT2	SIAE	Sialate O-acetylesterase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	102.1	102.04	2	6.4558E-07	88835	160511_QHF_FH_JSI12i_3	167.2	148.93			0.97481	0.8945	17.739	5	3	Median	1.1315	0.8945	NaN	1	0	Median	0.59731	0.68446	NaN	1	0	Median	0.91922	0.84843	NaN	1	1	Median	1.0122	1.0452	5.4629	2	2	Median	419040000	218630000	200410000	30204000	13090000	17114000	47215000	30758000	16457000	51271000	25063000	26207000	290350000	149720000	140630000	15382	4827	14587	92993;92994;92995;92996;92997	125609;125610;125611;125612	125612			3	
FFPHVLEK	1	Unmodified	1015.5491	0.54910224	4386	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	47.101	46.246	2;3	0.00041956	39524	160511_QHF_FH_JSI12i_3	78.334	54.906			1.0101	0.94096	42.598	8	4	Median	1.1806	0.97423	19.49	2	1	Median	0.65317	0.76827	18.358	2	0	Median	0.97707	0.91157	93.786	2	2	Median	1.2226	1.2403	28.748	2	1	Median	828580000	437130000	391460000	140050000	73623000	66429000	119930000	71133000	48799000	234760000	120640000	114110000	333840000	171730000	162110000	15383	4386	14588	92998;92999;93000;93001;93002;93003;93004;93005	125613;125614;125615;125616;125617;125618;125619;125620;125621;125622;125623;125624	125623			12	
FFPLESWQIGK	1	Unmodified	1350.6972	0.69722304	1336	P30046	DDT	D-dopachrome decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.663	1	4	5							2	4	2	2	91.409	90.869	2	2.2889E-07	81097	160511_QHF_FH_JSI11i_3	144.09	126.85			0.93615	0.90395	33.976	10	1	Median	1.0634	0.87966	7.3724	2	0	Median	0.5872	0.68672	45.755	4	1	Median	1.0617	1.0396	23.293	2	0	Median	1.0679	1.1212	20.169	2	0	Median	8591400000	4102900000	4488600000	1162700000	525060000	637660000	2127500000	1194500000	933090000	3206200000	1520600000	1685600000	2095000000	862780000	1232200000	15384	1336	14589	93006;93007;93008;93009;93010;93011;93012;93013;93014;93015	125625;125626;125627;125628;125629;125630;125631;125632;125633;125634;125635;125636;125637;125638;125639;125640;125641;125642;125643;125644;125645;125646;125647;125648;125649;125650;125651;125652;125653;125654;125655	125628			31	
FFPLIEVNK	1	Unmodified	1105.6172	0.61718181	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	4	2	3	79.179	78.401	2	9.5741E-05	69915	160511_QHF_FH_JSI11i_3	94.114	82.346			0.92716	1.001	49.757	11	8	Median	1.1001	0.9264	80.967	2	2	Median	0.93993	1.1036	63.341	4	4	Median	1.1477	1.1284	25.844	2	0	Median	0.89483	1.001	47.685	3	2	Median	998210000	481970000	516240000	136120000	63236000	72883000	337640000	160700000	176940000	314760000	163780000	150980000	209690000	94254000	115440000	15385	1293	14590	93016;93017;93018;93019;93020;93021;93022;93023;93024;93025;93026	125656;125657;125658;125659;125660;125661;125662;125663;125664;125665;125666;125667;125668;125669;125670;125671;125672;125673	125657			18	
FFPPDHTQLQEELTR	0	Unmodified	1856.9057	0.90571227	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	61.914	61.001	3	0.0026769	52259	160511_QHF_FH_JSI12i_2	45.723	40.514			0.67874	0.69669	51.24	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48921	0.48494	NaN	1	1	Median	0.94171	1.0009	NaN	1	0	Median	55846000	37112000	18733000	0	0	0	0	0	0	29524000	22594000	6930600	26321000	14519000	11803000	15386	5627	14591	93027;93028;93029;93030	125674;125675;125676;125677;125678	125676			5	
FFPYYVYNIIGGLDEEGK	1	Unmodified	2123.0252	0.025158703	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4		1	5	2	99.288	94.443	2;3	1.0659E-31	50013	160513_QHF_FH_JSI11Kac_6	212.95	183.26			1.1869	1.2525	42.867	6	2	Median	NaN	NaN	NaN	0	0	Median	1.1536	1.359	NaN	1	0	Median	1.221	1.1543	59.168	3	2	Median	1.2227	1.2612	13.233	2	0	Median	834080000	372170000	461910000	0	0	0	227900000	122020000	105890000	347360000	112470000	234880000	258820000	137680000	121140000	15387	1177	14592	93031;93032;93033;93034;93035;93036;93037;93038	125679;125680;125681;125682;125683;125684;125685	125682			7	
FFQEENTEK	1	Unmodified	1170.5193	0.51931826	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	4.9	6	3					2			2	3	1	5	19.165	17.019	2	7.2097E-06	14737	160511_QHF_FH_JSI12i_1	131.06	119.47			1.5954	1.9397	112.53	11	10	Median	1.0756	0.88328	230.56	2	1	Median	4.3802	5.0319	118.34	3	3	Plateau	2.7097	2.6292	NaN	1	1	Median	1.4155	1.6126	95.305	5	5	Median	2075100000	941550000	1133500000	502530000	213270000	289260000	384580000	156980000	227600000	363140000	167110000	196030000	824810000	404190000	420620000	15388	110	14593	93039;93040;93041;93042;93043;93044;93045;93046;93047;93048;93049	125686;125687;125688;125689;125690;125691;125692;125693;125694;125695;125696	125689			11	
FFQEENTEKLK	2	Acetyl (K)	1453.7089	0.70890994	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	51.594	41.108	2	0.0037347	23510	160513_QHF_FH_JSI12Kac_4	74.684	48.17			0.012253	0.014303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.012253	0.014303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4586000	4574000	11997	0	0	0	2091900	2079900	11997	0	0	0	2494100	2494100	0	15389	110	14594	93050;93051	125697;125698	125698	70		2	
FFQELPGSDPVFK	1	Unmodified	1509.7504	0.75038083	3111	Q6P996;Q6P474	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	74.096	73.271	2;3	0.00032998	66391	160511_QHF_FH_JSI10i_1	71.896	61.892			1.8921	2.058	80.332	5	4	Median	NaN	NaN	NaN	0	0	Median	0.60111	0.72224	48	2	1	Median	3.4568	3.4978	NaN	1	1	Median	2.2622	2.5012	27.58	2	2	Median	361220000	150230000	210990000	0	0	0	138410000	75491000	62916000	123700000	38054000	85650000	99113000	36687000	62426000	15390	3111	14595	93052;93053;93054;93055;93056;93057	125699;125700;125701;125702;125703;125704;125705	125702			7	
FFQGMPEKPTTTVR	1	Unmodified	1637.8236	0.82356254	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.89	0.314		1	8							3	5	1		43.961	42.639	2;3	0.0012037	34809	160511_QHF_FH_JSI9i_3	116.23	103.1			0.72846	0.73079	97.756	8	8	Median	0.68087	0.56997	90.559	3	3	Median	1.2854	1.4925	106.03	4	4	Median	0.29654	0.2773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	739260000	427980000	311280000	239220000	118820000	120400000	403480000	235520000	167950000	96558000	73634000	22924000	0	0	0	15391	1557	14596	93058;93059;93060;93061;93062;93063;93064;93065;93066	125706;125707;125708;125709;125710;125711;125712;125713;125714	125713			9	
FFQGSQEFLASASASAER	0	Unmodified	1931.9014	0.90135517	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	66.655	66.359	3	0.0011984	57334	160511_QHF_FH_JSI12i_3	53.554	44.139			0.61754	0.60588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61754	0.60588	NaN	1	1	Median	32807000	26368000	6438600	0	0	0	0	0	0	0	0	0	32807000	26368000	6438600	15392	3250	14597	93067;93068	125715;125716	125716			2	
FFQKADGVPVYLK	2	Acetyl (K)	1552.829	0.8289655	173	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		79.793	69.206	2	0.00039649	36723	160513_QHF_FH_JSI11Kac_5	93.058	83.371			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3310200	3310200	0	0	0	0	0	0	0	3310200	3310200	0	0	0	0	15393	173	14598	93069	125717	125717	94		1	
FFQLAAQWPTHVK	1	Unmodified	1571.8249	0.82488317	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	3	3	3	4	73.785	70.026	2;3	4.5962E-06	36979	160513_QHF_FH_JSI11Kac_6	97.69	92.03			1.178	1.1845	90.297	12	10	Median	2.7723	2.2899	66.987	3	3	Plateau	1.9659	2.2388	109.81	3	3	Median	1.2846	1.2066	115.03	3	2	Median	1.0801	1.1629	116.11	3	2	Median	777680000	375350000	402340000	120620000	43337000	77278000	162800000	76998000	85804000	245290000	130400000	114890000	248970000	124610000	124360000	15394	3163	14599	93070;93071;93072;93073;93074;93075;93076;93077;93078;93079;93080;93081;93082	125718;125719;125720;125721;125722;125723;125724;125725;125726;125727;125728;125729;125730;125731	125721			14	
FFQPTEMAAQDFFQR	0	Unmodified	1861.8458	0.84575455	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	88.525	88.054	2;3	8.5985E-30	77478	160511_QHF_FH_JSI11i_2	189.33	170.7			1.0504	1.0718	36.716	10	2	Median	1.13	0.96963	7.8561	2	0	Median	1.0119	1.2514	4.3396	2	0	Median	1.0586	1.0608	21.77	3	1	Plateau	1.0062	1.1076	59.413	3	1	Plateau	707700000	335780000	371920000	144000000	56375000	87626000	161350000	76865000	84486000	220720000	102760000	117960000	181620000	99779000	81844000	15395	726	14600	93083;93084;93085;93086;93087;93088;93089;93090;93091;93092;93093;93094	125732;125733;125734;125735;125736;125737;125738;125739;125740;125741;125742;125743;125744;125745;125746;125747;125748;125749;125750;125751	125743			20	
FFQPTEMAAQDFFQR	0	Oxidation (M)	1877.8407	0.84066917	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	78.571	77.369	2	0.055748	66843	160511_QHF_FH_JSI12i_2	54.471	7.6271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5930500	5930500	0	0	0	0	0	0	0	0	0	0	5930500	5930500	0	15396	726	14600	93095	125752	125752			1	
FFQPTEMASQDFFQR	0	Unmodified	1877.8407	0.84066917	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	2	2	81.922	81.132	2;3	1.235E-10	71926	160511_QHF_FH_JSI11i_2	118.51	52.292			1.0117	1.3098	13.398	6	1	Linear	NaN	NaN	NaN	0	0	Median	0.89297	1.0817	22.009	2	1	Median	1.2224	1.212	2.1003	2	0	Median	0.91642	1.025	10.766	2	0	Median	285790000	134460000	151330000	0	0	0	120190000	64884000	55306000	95365000	37332000	58033000	70236000	32244000	37992000	15397	635	14601	93096;93097;93098;93099;93100;93101;93102	125753;125754;125755;125756;125757;125758;125759;125760;125761;125762;125763;125764	125758			12	
FFQSPAHINLLK	1	Unmodified	1413.7769	0.77687035	4855	Q9HCE0	EPG5	Ectopic P granules protein 5 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.335	62.054	3	0.015189	53539	160511_QHF_FH_JSI12i_3	40.516	32.605			3.2989	3.5706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2989	3.5706	NaN	1	1	Median	11212000	3254500	7957300	0	0	0	0	0	0	0	0	0	11212000	3254500	7957300	15398	4855	14602	93103	125765	125765			1	
FFQTACDVPELQDK	1	Unmodified	1696.7767	0.77667193	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	59.915	59.384	2	6.3968E-40	53792	160511_QHF_FH_JSI11i_1	201	183.19			0.86988	0.94949	50.203	4	2	Median	NaN	NaN	NaN	0	0	Median	1.096	1.2837	NaN	1	0	Median	0.62307	0.59339	NaN	1	0	Median	1.0764	1.1011	63.592	2	2	Median	485690000	284150000	201540000	0	0	0	122330000	67621000	54704000	154180000	103110000	51064000	209190000	113410000	95775000	15399	1600	14603	93104;93105;93106;93107	125766;125767;125768;125769;125770	125766			5	
FFSEQQQSK	1	Unmodified	1127.5247	0.52473799	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	13.821	13.341	2	0.0017105	10937	160511_QHF_FH_JSI10i_1	76.679	59.439			1.2179	1.0278	52.605	7	5	Median	1.683	1.3985	43.55	2	1	Median	0.73093	0.86432	87.687	2	2	Median	1.2119	1.1836	64.182	2	2	Median	0.77659	0.88287	NaN	1	0	Median	302230000	145820000	156410000	66164000	25807000	40357000	91813000	48254000	43559000	91624000	38636000	52988000	52633000	33127000	19506000	15400	5646	14604	93108;93109;93110;93111;93112;93113;93114	125771;125772;125773;125774;125775;125776;125777;125778;125779	125774			9	
FFSGYGR	0	Unmodified	832.38679	0.38678794	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	3	3	2	25.252	24.579	2	0.0091124	20394	160511_QHF_FH_JSI12i_3	80.555	61.89			1.0527	1.053	70.58	9	4	Median	1.7591	1.4006	NaN	1	0	Median	1.0574	1.1942	75.407	3	2	Median	1.0527	1.053	108.07	3	2	Median	0.59027	0.633	0.93953	2	0	Median	3150400000	1618200000	1532200000	435110000	158650000	276470000	830210000	436820000	393380000	1096600000	553020000	543580000	788480000	469750000	318720000	15401	2378	14605	93115;93116;93117;93118;93119;93120;93121;93122;93123	125780;125781;125782;125783;125784;125785;125786;125787;125788	125787			9	
FFSLNDGQSWSQK	1	Unmodified	1542.7103	0.71030693	5747	Q9Y6Q9	NCOA3	Nuclear receptor coactivator 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.434	61.159	2	0.00050949	52740	160511_QHF_FH_JSI12i_3	69.346	60.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15402	5747	14606	93124	125789	125789			1	
FFSPLQK	1	Unmodified	865.46979	0.46978929	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	44.158	43.381	2	0.0098209	38082	160511_QHF_FH_JSI10i_2	77.496	24.31			1.2639	1.1377	54.229	5	4	Median	1.2639	1.0768	NaN	1	1	Median	2.0614	2.5002	NaN	1	0	Median	1.2567	1.2215	10.043	2	2	Median	0.48975	0.54666	NaN	1	1	Median	1454300000	957350000	496960000	252880000	180090000	72793000	141420000	53688000	87728000	542350000	311460000	230890000	517670000	412130000	105540000	15403	2754	14607	93125;93126;93127;93128;93129	125790;125791;125792;125793;125794	125794			5	
FFSSQIPSSVNK	1	Unmodified	1339.6772	0.67721588	2794	Q2NKX8	ERCC6L	DNA excision repair protein ERCC-6-like	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.777	47.379	2	0.00075108	40538	160511_QHF_FH_JSI12i_2	78.655	55.227			0.55882	0.60884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55882	0.60884	NaN	1	1	Median	15976000	10384000	5591400	0	0	0	0	0	0	0	0	0	15976000	10384000	5591400	15404	2794	14608	93130	125795	125795			1	
FFSSYLVTLTR	0	Unmodified	1332.7078	0.70778773	2966	Q5TC63	GRTP1	Growth hormone-regulated TBC protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	82.225	74.109	2	3.2403E-07	41709	160513_QHF_FH_JSI10Kac_6	108.43	92.802			0.55089	0.63274	36.629	3	1	Median	NaN	NaN	NaN	0	0	Median	0.53599	0.63274	NaN	1	1	Median	1.127	1.1137	NaN	1	0	Median	0.55089	0.5608	NaN	1	0	Median	120730000	67979000	52754000	0	0	0	67389000	39114000	28275000	33705000	18501000	15205000	19638000	10364000	9273900	15405	2966	14609	93131;93132;93133	125796;125797	125797			1	
FFSTLYENCFHILGK	1	Unmodified	1874.9025	0.90254115	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			88.562	87.431	3	0.013591	73198	160511_QHF_FH_JSI10i_3	42.568	36.909			0.50984	0.60463	73.435	3	3	Plateau	2.7492	2.3631	NaN	1	1	Median	0.91137	1.0635	80.844	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36223000	18175000	18048000	6733900	1152900	5581000	29489000	17022000	12467000	0	0	0	0	0	0	15406	4831	14610	93134;93135;93136	125798;125799;125800	125799			3	
FFTAICDMVAWLGYTPYK	1	Unmodified	2182.0268	0.026755383	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	3	2	1	99.013	91.05	2;3	6.0981E-103	54605	160513_QHF_FH_JSI10Kac_6	287.04	269.37			5.0294	5.1737	174.2	6	6	Median	10.641	9.3107	NaN	1	1	Median	1.1475	1.3706	254.47	2	2	Median	1.3185	1.2651	226.14	2	2	Median	3.9318	4.2758	NaN	1	1	Median	734980000	400440000	334540000	154950000	81036000	73916000	288500000	183820000	104690000	231070000	124570000	106500000	60456000	11013000	49442000	15407	1609	14611	93137;93138;93139;93140;93141;93142;93143;93144;93145	125801;125802;125803;125804;125805;125806;125807;125808;125809	125809			9	
FFTDDLFQYAGEK	1	Unmodified	1579.7195	0.71947463	3082	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	1	3	2	87.209	86.547	2	6.7146E-10	78579	160511_QHF_FH_JSI10i_1	113.47	98.5			1.1484	1.2123	22.689	6	5	Median	1.5786	1.3441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0435	1.0557	25.895	3	2	Plateau	0.89247	0.98063	22.342	2	2	Median	387400000	204780000	182620000	55206000	24435000	30771000	0	0	0	203220000	104020000	99196000	128970000	76318000	52652000	15408	3082	14612	93146;93147;93148;93149;93150;93151;93152	125810;125811;125812;125813;125814;125815;125816	125813			7	
FFTDNVPALVQGFHAAPQDVKPNYLK	2	Unmodified	2915.497	0.49701368	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	3	1	1	89.127	87.867	4	5.5534E-10	80100	160511_QHF_FH_JSI11i_3	78.098	75.418			0.7927	0.86485	24.899	6	3	Median	1.602	1.3458	NaN	1	1	Median	0.71833	0.80402	18.493	3	2	Median	0.99333	0.91984	NaN	1	0	Median	0.83426	0.8327	NaN	1	0	Median	498180000	273900000	224290000	22865000	4984200	17881000	199320000	126930000	72386000	221960000	109810000	112150000	54037000	32169000	21869000	15409	4258	14613	93153;93154;93155;93156;93157;93158	125817;125818;125819;125820;125821;125822;125823;125824	125817			7	
FFTEEVDSR	0	Unmodified	1128.5088	0.50875357	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		35.328	34.595	2	4.2086E-05	29488	160511_QHF_FH_JSI11i_2	117.81	102.66			0.67341	0.61475	18.893	2	2	Median	0.83434	0.70262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54353	0.53788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	168760000	75864000	92895000	67405000	24918000	42488000	0	0	0	101350000	50946000	50407000	0	0	0	15410	4777	14614	93159;93160	125825;125826	125826			2	
FFTEEVDSRK	1	Unmodified	1256.6037	0.60371659	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		27.427	27.063	3	0.015734	22736	160511_QHF_FH_JSI11i_2	38.402	33.098			12.694	13.231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.694	13.231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	755430000	60137000	695290000	0	0	0	0	0	0	755430000	60137000	695290000	0	0	0	15411	4777	14615	93161	125827	125827			1	
FFTGDVFGYHGYTFANLGEHEFVEEK	1	Unmodified	3039.3715	0.37153839	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	2	2	2	3	90.219	84.958	3;4	4.2789E-130	44704	160513_QHF_FH_JSI10Kac_6	247.39	220.3			0.95098	0.98883	17.558	9	2	Median	1.3704	1.1737	8.9013	2	1	Median	0.80977	0.95382	24.763	2	1	Median	1.1222	1.0547	11.584	2	0	Median	0.89519	0.93959	16.232	3	0	Plateau	1649700000	861190000	788550000	407780000	166130000	241650000	702410000	441790000	260620000	224360000	101420000	122940000	315190000	151850000	163340000	15412	5233	14616	93162;93163;93164;93165;93166;93167;93168;93169;93170	125828;125829;125830;125831;125832;125833;125834;125835;125836;125837;125838;125839;125840	125838			13	
FFTGQITAAGK	1	Unmodified	1139.5975	0.597509	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	43.422	42.919	2	0.0018789	36740	160511_QHF_FH_JSI12i_3	74.533	66.07			1.5021	1.4977	43.105	4	4	Median	NaN	NaN	NaN	0	0	Median	1.7121	2.0263	NaN	1	1	Median	1.3179	1.2238	NaN	1	1	Median	1.1964	1.2012	59.748	2	2	Median	271260000	93344000	177910000	0	0	0	15338000	4204300	11134000	98915000	31833000	67082000	157000000	57307000	99698000	15413	2405	14617	93171;93172;93173;93174;93175	125841;125842;125843;125844;125845	125845			5	
FFTGQLLNHIASLYNWNGITDVNPENVK	1	Unmodified	3203.604	0.60399795	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			95.758	90.037	3	2.1039E-65	51971	160513_QHF_FH_JSI10Kac_6	233.87	218.71			1.1679	1.3761	14.096	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1679	1.3761	14.096	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	238710000	115070000	123640000	0	0	0	238710000	115070000	123640000	0	0	0	0	0	0	15414	405	14618	93176;93177	125846;125847	125846			2	
FFTQPEK	1	Unmodified	895.44397	0.44396847	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	22.684	21.644	2	0.010606	17932	160511_QHF_FH_JSI12i_2	64.803	42.181			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15415	2789	14619	93178;93179	125848;125849	125848			2	
FFTSSTSLTLK	1	Unmodified	1230.6496	0.64960415	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.7	6.13			1						2			1	2	64.247	57.677	2	0.0016802	49811	160511_QHF_FH_JSI12i_3	75.294	63.446			2.2943	2.2285	62.949	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4906	1.4279	NaN	1	1	Median	3.5314	3.4779	NaN	1	1	Median	64432000	23719000	40713000	0	0	0	0	0	0	29774000	15165000	14610000	34658000	8554800	26103000	15416	4284	14620	93180;93181;93182	125850;125851;125852	125851			3	
FFTTPSK	1	Unmodified	826.4225	0.42250475	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	25.063	23.99	2	0.036665	20806	160511_QHF_FH_JSI10i_2	50.127	33.2			1.6339	1.9003	10.692	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6502	2.0496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6178	1.762	NaN	1	1	Median	395390000	209040000	186350000	0	0	0	167810000	90880000	76932000	0	0	0	227580000	118160000	109420000	15417	596	14621	93183;93184	125853;125854	125854			2	
FFTYGNFPLEQHLK	1	Unmodified	1739.8671	0.86714192	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	76.271	75.644	3	3.718E-05	66631	160511_QHF_FH_JSI9i_2	95.981	90.439			1.1036	1.0695	25.414	7	4	Median	1.2864	1.0976	NaN	1	0	Median	0.87787	1.0643	41.176	2	2	Median	0.84456	0.82183	32.46	2	1	Median	1.0635	1.0988	3.8167	2	1	Median	568710000	281690000	287020000	60000000	24911000	35089000	135520000	70727000	64789000	251670000	123010000	128660000	121520000	63043000	58477000	15418	2900	14622	93185;93186;93187;93188;93189;93190;93191	125855;125856;125857;125858;125859;125860;125861	125857			7	
FFVADTANEALEAAK	1	Unmodified	1595.7831	0.78313752	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	73.546	72.851	2	8.3431E-05	65975	160511_QHF_FH_JSI10i_1	140.14	126.79			0.84111	0.87671	19.819	9	3	Median	0.98288	0.82579	27.129	2	1	Median	0.74663	0.87671	30.357	3	2	Median	0.8923	0.87488	14.023	2	0	Median	0.85105	0.90679	12.822	2	0	Median	492770000	261220000	231550000	75257000	32509000	42748000	172050000	98178000	73869000	122090000	62504000	59585000	123380000	68030000	55348000	15419	4122	14623	93192;93193;93194;93195;93196;93197;93198;93199;93200	125862;125863;125864;125865;125866;125867;125868;125869;125870;125871;125872	125866			11	
FFVAVPGQVISPQSSSSGTDLTGDK	1	Unmodified	2523.2493	0.24929799	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	3	3								1	2	1	2	86.19	85.669	3	4.4686E-09	77755	160511_QHF_FH_JSI10i_1	74.222	67.662			1.1076	1.1399	10.739	5	1	Linear	1.1076	0.94469	NaN	1	0	Median	0.81343	0.9685	NaN	1	0	Median	1.1097	1.0696	NaN	1	0	Median	0.99299	1.0676	17.653	2	1	Median	176290000	85127000	91167000	10588000	4335800	6252300	41578000	14690000	26888000	48230000	28857000	19373000	75899000	37244000	38654000	15420	404	14624	93201;93202;93203;93204;93205;93206	125873;125874;125875;125876;125877;125878	125875			6	
FFVENLNHDAIVVR	0	Unmodified	1671.8733	0.87328993	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		68.014	68.014	3	0.0062583	60585	160511_QHF_FH_JSI11i_3	49.188	39.905			2.2266	2.0601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2266	2.0601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14239000	3881700	10357000	0	0	0	0	0	0	14239000	3881700	10357000	0	0	0	15421	2588	14625	93207	125879	125879			1	
FFVENLNHDAIVVRK	1	Unmodified	1799.9683	0.96825295	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				60.881	59.357	3	0.019394	48744	160511_QHF_FH_JSI9i_3	35.118	25.836			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15422	2588	14626	93208	125880	125880			1	
FFVGGNWK	1	Unmodified	953.47594	0.4759373	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	58.273	54.644	2	0.00028736	45122	160511_QHF_FH_JSI9i_3	125.86	87.619			0.94897	0.96419	86.831	12	6	Median	1.2243	1.0281	115.42	3	2	Median	0.94554	0.94357	36.931	3	0	Median	1.0162	0.9573	87.388	3	2	Median	0.93052	0.97112	120.03	3	2	Median	80580000000	38518000000	42062000000	16374000000	5711200000	10663000000	11659000000	5141900000	6517300000	21307000000	11130000000	10177000000	31240000000	16535000000	14705000000	15423	1908	14627	93209;93210;93211;93212;93213;93214;93215;93216;93217;93218;93219;93220	125881;125882;125883;125884;125885;125886;125887;125888;125889;125890;125891;125892;125893;125894;125895;125896;125897;125898;125899;125900;125901;125902;125903;125904;125905;125906;125907;125908;125909;125910;125911;125912;125913;125914;125915;125916;125917;125918;125919;125920;125921;125922	125902			42	
FFVGGNWKMNGR	1	Acetyl (K)	1453.6925	0.69248879	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			74.713	68.203	2	2.6454E-05	37154	160513_QHF_FH_JSI10Kac_6	105.52	97.875			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9760300	9760300	0	0	0	0	9760300	9760300	0	0	0	0	0	0	0	15424	1908	14628	93221	125923	125923	1907		1	
FFVGPEDTEINPGNYR	0	Unmodified	1853.8584	0.85842773	321	O43314	PPIP5K2	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	72.575	71.751	2	1.6349E-11	62897	160511_QHF_FH_JSI11i_2	112.15	102.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15425	321	14629	93222;93223;93224;93225	125924;125925;125926;125927	125925			4	
FFVLCGDLIHAMPGK	1	Unmodified	1703.8528	0.85275418	4369	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.443	90.377	3	0.060587	78453	160511_QHF_FH_JSI12i_3	23.456	12.822			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2943800	0	2943800	0	0	0	0	0	0	0	0	0	2943800	0	2943800	15426	4369	14630	93226	125928	125928			1	
FFVMTSLR	0	Unmodified	999.52117	0.52117293	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	3	2	1	1	70.915	65.297	2	4.011E-07	35877	160513_QHF_FH_JSI10Kac_6	143	78.201			0.88382	0.97879	39.622	7	2	Median	1.2589	1.0784	64.375	3	2	Median	0.85071	0.99986	3.0128	2	0	Median	0.98222	0.93833	NaN	1	0	Median	0.69101	0.71977	NaN	1	0	Median	1702400000	862380000	840040000	478400000	204630000	273770000	799920000	419490000	380430000	302100000	167120000	134980000	121990000	71136000	50856000	15427	1792	14631	93227;93228;93229;93230;93231;93232;93233	125929;125930;125931;125932;125933;125934;125935;125936;125937	125937			9	
FFVMTSLR	0	Oxidation (M)	1015.5161	0.51608756	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	15.8	0.433								1	3	2	1		1	61.224	50.94	2	0.0082114	28006	160513_QHF_FH_JSI10Kac_6	70.69	29.463			1.104	1.0518	1.541	2	0	Median	1.2505	1.0634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97467	1.0404	NaN	1	0	Median	73681000	39992000	33689000	8677000	4474500	4202500	0	0	0	0	0	0	65004000	35517000	29487000	15428	1792	14631	93234;93235;93236;93237	125938;125939;125940	125940		1469	3	
FFVSCNVQSVDEK	1	Unmodified	1557.7133	0.71334339	2937	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	51.839	51.312	2	6.2691E-05	43771	160511_QHF_FH_JSI12i_2	74.841	67.195			0.99432	0.98044	75.67	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99432	0.98044	75.67	2	2	Median	NaN	NaN	NaN	0	0	Median	37474000	16782000	20692000	0	0	0	0	0	0	37474000	16782000	20692000	0	0	0	15429	2937	14632	93238;93239;93240	125941;125942;125943;125944	125941			4	
FFVSSSQGR	0	Unmodified	1013.493	0.49304393	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.39	3	4	4					1	4	4	4	4	4	27.182	23.942	2	2.0464E-08	20045	160511_QHF_FH_JSI12i_3	150.84	140.53			0.94642	0.97099	18.116	16	1	Median	1.2071	1.0137	23.116	4	0	Median	0.91919	1.071	18.02	4	0	Median	0.91028	0.89737	17.437	4	1	Median	0.84594	0.89365	12.101	4	0	Median	16593000000	8198200000	8394400000	3244200000	1396500000	1847700000	4206500000	2213400000	1993100000	4787500000	2423000000	2364500000	4354300000	2165300000	2189100000	15430	1441	14633	93241;93242;93243;93244;93245;93246;93247;93248;93249;93250;93251;93252;93253;93254;93255;93256	125945;125946;125947;125948;125949;125950;125951;125952;125953;125954;125955;125956;125957;125958;125959;125960;125961;125962;125963;125964;125965;125966;125967;125968;125969;125970	125967			26	
FFVTTLPAFFHAK	1	Unmodified	1524.8129	0.8129215	4658	Q9H1E5	TMX4	Thioredoxin-related transmembrane protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.67		2	4						6	3	5	2	2	91.098	86.958	3	2.382E-20	43571	160513_QHF_FH_JSI11Kac_6	119.39	99.28			1.0473	0.95645	42.608	12	7	Median	0.63499	0.52638	44.655	3	2	Plateau	0.77991	0.8944	59.674	5	4	Median	1.0947	1.0466	6.8626	2	0	Median	0.96791	1.0034	12.656	2	1	Median	1835200000	917460000	917690000	525920000	273720000	252190000	511850000	236940000	274920000	395450000	217050000	178400000	401930000	189760000	212170000	15431	4658	14634	93257;93258;93259;93260;93261;93262;93263;93264;93265;93266;93267;93268	125971;125972;125973;125974;125975;125976;125977;125978;125979;125980;125981;125982;125983;125984;125985;125986;125987;125988;125989;125990;125991;125992;125993;125994;125995;125996	125979			26	
FFWGNAETLK	1	Unmodified	1211.5975	0.597509	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	66.164	65.264	2	5.6906E-05	56854	160511_QHF_FH_JSI11i_2	103.8	84.027			0.66079	0.70967	8.096	4	4	Median	0.80613	0.67547	NaN	1	1	Median	0.65755	0.80268	NaN	1	1	Median	0.66406	0.68093	NaN	1	1	Median	0.65538	0.73962	NaN	1	1	Median	544500000	310920000	233570000	74513000	33292000	41222000	127860000	82294000	45566000	187640000	115960000	71683000	154490000	79381000	75104000	15432	387	14635	93269;93270;93271;93272;93273	125997;125998;125999;126000;126001	126000			5	
FFWGNAETLKHEPR	1	Acetyl (K)	1772.8635	0.86345352	387	O43847	NRD1	Nardilysin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.713	63.33	3	0.0017716	34344	160513_QHF_FH_JSI11Kac_6	68.173	56.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15433	387	14636	93274	126002	126002	202		1	
FFWHLTLPER	0	Unmodified	1344.6979	0.69789175	1855	P55212	CASP6	Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									3	2			1	80.543	71.505	3	2.4725E-08	38707	160513_QHF_FH_JSI9Kac_6	105.52	94.31			1.0935	1.056	45.653	2	2	Median	1.6574	1.4584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72146	0.76469	NaN	1	1	Median	49688000	21489000	28199000	28849000	11748000	17101000	0	0	0	0	0	0	20839000	9740900	11098000	15434	1855	14637	93275;93276;93277	126003;126004;126005	126003			3	
FFYISQLAYWLHAFPELYFQK	1	Unmodified	2710.3624	0.36241768	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	3	1	1	100.21	92.269	2;3;4	6.8397E-210	55455	160513_QHF_FH_JSI10Kac_6	348.96	331.47			0.75277	0.88878	26.667	8	2	Median	1.1036	0.94572	36.588	3	2	Median	0.71786	0.85343	6.9086	3	0	Median	1.4108	1.325	NaN	1	0	Median	0.67082	0.7114	NaN	1	0	Median	3271200000	1814500000	1456700000	649340000	311400000	337940000	2498000000	1427000000	1071000000	77377000	49944000	27433000	46539000	26182000	20357000	15435	2687	14638	93278;93279;93280;93281;93282;93283;93284;93285	126006;126007;126008;126009;126010;126011;126012;126013;126014;126015;126016;126017	126015			12	
FFYQFLLGNER	0	Unmodified	1432.7139	0.71393574	3502	Q8N1B4	VPS52	Vacuolar protein sorting-associated protein 52 homolog	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	86.256	76.814	2	6.9029E-05	41056	160513_QHF_FH_JSI12Kac_6	99.53	70.733			0.56995	0.61741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56995	0.61741	NaN	1	1	Median	22488000	15620000	6867800	0	0	0	0	0	0	0	0	0	22488000	15620000	6867800	15436	3502	14639	93286	126018	126018			1	
FFYQNIWR	0	Unmodified	1172.5767	0.57671398	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	76.252	67.873	2	0.0012855	35449	160513_QHF_FH_JSI12Kac_6	100.67	88.044			1.1974	1.294	20.21	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93172	1.0914	NaN	1	0	Median	1.7146	1.6324	NaN	1	0	Median	1.1974	1.294	NaN	1	0	Median	250290000	93820000	156470000	0	0	0	197260000	72208000	125050000	27798000	10253000	17544000	25239000	11359000	13880000	15437	3639	14640	93287;93288;93289	126019;126020;126021	126020			3	
FFYSDQNVDSR	0	Unmodified	1376.5997	0.59969384	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0			By MS/MS		2	0		1										1		37.193	36.75	2	0.035022	31411	160511_QHF_FH_JSI11i_2	46.462	37.14			1.2375	1.2569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2375	1.2569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19383000	7998800	11384000	0	0	0	0	0	0	19383000	7998800	11384000	0	0	0	15438	5616;5628	14641	93290	126022	126022			1	
FFYSDQNVDSRDPVQLNLLYVQAR	0	Unmodified	2886.4301	0.43005633	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.78		5	1						4	2	2	3	3	90.222	86.687	3;4	4.6664E-129	42624	160513_QHF_FH_JSI11Kac_6	252.02	235.08			1.3471	1.2393	31.953	10	2	Median	1.3822	1.1759	4.4121	2	0	Median	1.1968	1.4458	59.469	2	0	Median	1.4064	1.3214	41.087	3	1	Plateau	1.1549	1.266	22.984	3	1	Median	1801300000	856950000	944370000	278170000	132130000	146040000	641190000	328140000	313050000	497000000	194160000	302850000	384960000	202530000	182430000	15439	5616;5628	14642	93291;93292;93293;93294;93295;93296;93297;93298;93299;93300	126023;126024;126025;126026;126027;126028;126029;126030;126031;126032;126033;126034;126035	126024			13	
FGANAILGVSLAVCK	1	Unmodified	1518.8228	0.82283426	854;1044;922	P06733;P09104;P13929	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	4.8		14	27		1				7	6	12	14	17	90.772	89.147	2;3	7.5251E-17	44146	160513_QHF_FH_JSI10Kac_6	145.29	135.61			0.87129	0.88996	29.529	35	14	Median	1.1898	1.0113	51.43	4	2	Median	0.88658	1.0502	21.817	10	6	Median	0.75466	0.73522	30.136	9	2	Median	0.88343	0.91559	22.674	12	4	Median	1824800000	949220000	875560000	220480000	108520000	111960000	410190000	224120000	186070000	303090000	174720000	128380000	891020000	441860000	449160000	15440	854;922;1044	14643	93301;93302;93303;93304;93305;93306;93307;93308;93309;93310;93311;93312;93313;93314;93315;93316;93317;93318;93319;93320;93321;93322;93323;93324;93325;93326;93327;93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338;93339;93340;93341;93342;93343;93344;93345;93346;93347;93348;93349	126036;126037;126038;126039;126040;126041;126042;126043;126044;126045;126046;126047;126048;126049;126050;126051;126052;126053;126054;126055;126056;126057;126058;126059;126060;126061;126062;126063;126064;126065;126066;126067;126068;126069;126070;126071;126072;126073;126074;126075;126076;126077;126078;126079;126080;126081;126082;126083;126084;126085;126086;126087;126088;126089;126090;126091;126092;126093;126094;126095;126096;126097;126098;126099;126100;126101;126102;126103;126104;126105;126106;126107	126105			70	
FGAPPHAGGGIGLER	0	Unmodified	1434.7368	0.73679645	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							4	3	3	1	41.15	40.313	2;3	0.00010155	33778	160511_QHF_FH_JSI10i_3	72.175	66.333			0.95111	0.96614	26.292	10	3	Median	1.6681	1.4013	25.118	3	1	Plateau	0.87991	1.0252	8.7592	3	0	Median	0.95043	0.9193	9.2153	3	2	Median	0.57618	0.5955	NaN	1	0	Median	2882600000	1482600000	1400000000	580520000	199210000	381310000	1103800000	558340000	545430000	726260000	411660000	314600000	472040000	313370000	158670000	15441	1064	14644	93350;93351;93352;93353;93354;93355;93356;93357;93358;93359;93360	126108;126109;126110;126111;126112;126113;126114;126115;126116;126117;126118;126119;126120;126121;126122;126123;126124;126125	126113			18	
FGAQNEEMLPSILVLLK	1	Unmodified	1901.0332	0.033220969	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		8	4						4	2	4	4	6	101.21	99.261	2;3	1.4311E-213	50467	160513_QHF_FH_JSI11Kac_6	323.66	284.78			0.8631	0.92295	15.67	16	3	Median	1.1353	0.9815	1.4012	2	0	Median	0.83312	1.0151	14.361	4	0	Median	0.9927	0.94237	12.793	4	0	Median	0.73223	0.79084	13.881	6	3	Median	2070800000	1151700000	919070000	253720000	118830000	134890000	577830000	333320000	244510000	520290000	266230000	254060000	718910000	433300000	285610000	15442	5708	14645	93361;93362;93363;93364;93365;93366;93367;93368;93369;93370;93371;93372;93373;93374;93375;93376	126126;126127;126128;126129;126130;126131;126132;126133;126134;126135;126136;126137;126138;126139;126140;126141	126131			15	
FGAQNESLLPSILVLLQR	0	Unmodified	1997.131	0.13096118	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.365	89.231	2	2.2102E-15	51286	160513_QHF_FH_JSI9Kac_6	180.11	157.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39420000	0	39420000	39420000	0	39420000	0	0	0	0	0	0	0	0	0	15443	5234	14646	93377	126142	126142			1	
FGAQQDTIEVPEK	1	Unmodified	1460.7147	0.7147236	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	4	1				1				1	2	1	2	49.34	47.197	2	3.31E-07	42282	160511_QHF_FH_JSI10i_1	182.71	138.29			0.77308	1.0176	33.22	6	6	Linear	1.3077	1.0819	NaN	1	1	Median	0.508	0.611	50.256	2	2	Median	1.0095	0.98244	NaN	1	1	Median	0.7219	0.76364	13.757	2	2	Median	2299400000	1264200000	1035200000	558420000	228400000	330020000	517030000	303480000	213540000	699250000	409950000	289300000	524690000	322330000	202360000	15444	1674	14647	93378;93379;93380;93381;93382;93383	126143;126144;126145;126146;126147;126148	126145			6	
FGATLEIVTDK	1	Unmodified	1192.634	0.63395408	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.035	64.134	2	6.9001E-08	55804	160511_QHF_FH_JSI11i_2	125.75	101.59			1.1525	1.2517	16.395	4	1	Median	1.7576	1.5497	NaN	1	1	Median	0.94174	1.149	NaN	1	0	Median	1.3648	1.3636	NaN	1	0	Median	0.97315	1.081	NaN	1	0	Median	257950000	113380000	144570000	46051000	18830000	27221000	51362000	23296000	28066000	86715000	35496000	51219000	73820000	35757000	38063000	15445	2010	14648	93384;93385;93386;93387	126149;126150;126151;126152;126153;126154	126152			6	
FGAVEGAVAK	1	Unmodified	947.50763	0.50763136	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.2	0.4		4	1							3		1	1	30.684	29.649	2	0.00043371	25198	160511_QHF_FH_JSI11i_2	88.819	47.317			0.62273	0.54103	144.63	5	5	Median	4.1265	3.5118	117.1	3	3	Median	NaN	NaN	NaN	0	0	Median	0.16478	0.16616	NaN	1	1	Median	0.35328	0.39263	NaN	1	1	Median	364840000	191560000	173280000	154100000	54370000	99727000	0	0	0	85952000	62078000	23874000	124790000	75116000	49679000	15446	4773	14649	93388;93389;93390;93391;93392	126155;126156;126157;126158;126159	126159			5	
FGAVFLWDSGSSVGEITGHNK	1	Unmodified	2207.0647	0.064732107	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.33		4	6						5	6	3	4	2	88.402	85.315	2;3	1.205E-167	43340	160513_QHF_FH_JSI10Kac_6	341.18	323.08			1.0197	0.96077	29.169	14	7	Median	1.5802	1.2885	36.724	5	4	Median	0.73575	0.85046	6.4486	3	0	Median	1.299	1.2151	27.121	4	3	Median	0.86389	0.89974	6.4504	2	0	Median	3840100000	1814200000	2025900000	544370000	216300000	328070000	1557100000	907640000	649420000	1069800000	376380000	693460000	668790000	313880000	354910000	15447	472	14650	93393;93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407	126160;126161;126162;126163;126164;126165;126166;126167;126168;126169;126170;126171;126172;126173;126174;126175;126176;126177;126178;126179	126179			20	
FGAVWTGDNTAEWDHLK	1	Unmodified	1945.8959	0.89587586	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.18		9	8						2	4	3	6	6	75.168	73.6	2;3	3.8336E-66	64345	160511_QHF_FH_JSI12i_2	197.88	191.98			0.96915	0.97057	31.272	19	8	Median	1.235	1.0402	15.811	4	0	Median	0.73465	0.9029	20.353	3	1	Median	0.97439	0.99258	26.319	6	3	Median	0.86019	0.91944	47.863	6	4	Median	3221600000	1661900000	1559700000	517640000	257360000	260290000	565680000	308530000	257150000	1243100000	573440000	669610000	895200000	522580000	372620000	15448	2569	14651	93408;93409;93410;93411;93412;93413;93414;93415;93416;93417;93418;93419;93420;93421;93422;93423;93424;93425;93426	126180;126181;126182;126183;126184;126185;126186;126187;126188;126189;126190;126191;126192;126193;126194;126195;126196;126197;126198;126199;126200;126201;126202;126203;126204;126205;126206;126207;126208;126209;126210;126211;126212;126213;126214;126215;126216;126217;126218	126187			39	
FGDFVLK	1	Unmodified	824.44324	0.44324019	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.151	60.24	2	0.019031	52256	160511_QHF_FH_JSI11i_2	58.981	35.009			0.90115	0.92193	23.79	4	1	Median	1.0439	0.8885	NaN	1	1	Median	0.77791	0.95662	NaN	1	0	Median	1.0716	1.0884	NaN	1	0	Median	0.55847	0.62424	NaN	1	0	Median	807840000	397250000	410600000	145620000	57800000	87816000	222360000	120390000	101970000	293490000	127420000	166070000	146380000	91646000	54732000	15449	989	14652	93427;93428;93429;93430	126219;126220;126221;126222	126221			4	
FGDLILK	1	Unmodified	804.47454	0.47454032	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		59.536	58.747	2	0.012945	50818	160511_QHF_FH_JSI11i_2	72.138	19.455			0.82145	0.83358	12.183	3	3	Plateau	1.234	1.0509	NaN	1	1	Median	0.78473	0.95002	NaN	1	1	Median	0.82145	0.8246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	695650000	388640000	307010000	117850000	61583000	56264000	228250000	131340000	96908000	349550000	195720000	153840000	0	0	0	15450	3101	14653	93431;93432;93433	126223;126224;126225	126224			3	
FGDPECQVILPLLK	1	Unmodified	1627.8644	0.86436473	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	98.75	98.666	2	3.4531E-06	86782	160511_QHF_FH_JSI11i_2	130.56	105.09			0.74746	0.80712	21.553	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8258	0.94	NaN	1	1	Median	0.67655	0.69303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61485000	31476000	30009000	0	0	0	21217000	8896000	12321000	40268000	22580000	17688000	0	0	0	15451	1205	14654	93434;93435;93436;93437	126226;126227;126228;126229	126228			4	
FGDPVVQSDMK	1	Unmodified	1221.57	0.56997362	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.43	5	4	4			3	3			4	5	6	4	45.455	41.325	2	1.5746E-18	37712	160511_QHF_FH_JSI12i_1	166.55	149.77			0.93579	1.0285	52.096	17	1	Median	1.1138	0.91898	111.13	4	1	Median	0.8888	1.0639	4.3072	5	0	Median	1.1785	1.1382	6.4218	4	0	Median	0.7002	0.74701	5.6915	4	0	Median	16450000000	7480000000	8969800000	3358000000	1252000000	2106100000	4604400000	2262700000	2341700000	5652900000	2303400000	3349600000	2834300000	1661900000	1172400000	15452	954	14655	93438;93439;93440;93441;93442;93443;93444;93445;93446;93447;93448;93449;93450;93451;93452;93453;93454;93455;93456	126230;126231;126232;126233;126234;126235;126236;126237;126238;126239;126240;126241;126242;126243;126244;126245;126246;126247;126248;126249;126250;126251;126252;126253;126254;126255;126256;126257;126258;126259;126260;126261;126262;126263;126264;126265;126266;126267;126268	126241			39	
FGDPVVQSDMK	1	Oxidation (M)	1237.5649	0.56488824	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	5.99	4					4	3			2	3	3	3	34.216	27.3	2	2.3165E-05	26932	160511_QHF_FH_JSI10i_1	105.52	78.269			0.98642	1.0478	22.59	11	0	Median	0.9645	0.79157	39.664	2	0	Median	0.98642	1.157	9.0696	3	0	Median	1.1072	1.0708	8.2741	3	0	Median	0.88977	0.93186	11.781	3	0	Plateau	1170100000	552030000	618020000	233000000	97162000	135840000	333730000	158510000	175220000	267470000	114300000	153170000	335850000	182050000	153800000	15453	954	14655	93457;93458;93459;93460;93461;93462;93463;93464;93465;93466;93467	126269;126270;126271;126272;126273;126274;126275;126276;126277;126278;126279;126280;126281;126282;126283;126284;126285;126286;126287;126288;126289;126290;126291;126292;126293;126294	126282		528	26	
FGDPVVQSDMKHWPFQVINDGDKPK	3	Acetyl (K)	2925.412	0.41196342	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	2	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	1	2	1	84.75	76.287	3;4	3.5626E-52	41994	160513_QHF_FH_JSI11Kac_6	182.33	172.21			0.69935	0.67805	64.438	4	0	Median	1.0164	0.89335	NaN	1	0	Median	1.3836	1.6352	NaN	1	0	Median	0.3982	0.37826	NaN	1	0	Median	0.48121	0.51463	NaN	1	0	Median	797350000	497610000	299750000	29019000	14181000	14839000	223530000	86935000	136590000	459350000	337690000	121670000	85454000	58805000	26650000	15454	954	14656	93468;93469;93470;93471;93472	126295;126296;126297;126298	126295	717		4	
FGDQVLQINGENCAGWSSDK	1	Unmodified	2223.9855	0.98549551	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.627	69.369	2	4.026E-11	62848	160511_QHF_FH_JSI10i_1	103.21	94.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15455	151	14657	93473	126299	126299			1	
FGDRFPAMSDAYDR	0	Unmodified	1646.7147	0.71474038	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				54.475	52.9	3	0.0003096	43479	160511_QHF_FH_JSI9i_3	68.944	64.229			1.3288	1.0613	NaN	1	0	Median	1.3288	1.0613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156540000	55240000	101300000	156540000	55240000	101300000	0	0	0	0	0	0	0	0	0	15456	771	14658	93474	126300;126301;126302	126301			3	
FGDSNTVMR	0	Unmodified	1025.46	0.46002924	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	24.867	23.988	2	0.00013531	19978	160511_QHF_FH_JSI12i_2	90.64	73.275			0.96227	0.98459	12.069	4	0	Median	1.097	0.93323	NaN	1	0	Median	0.85489	1.0388	NaN	1	0	Median	1.0831	1.0971	NaN	1	0	Median	0.74922	0.83529	NaN	1	0	Median	843240000	441780000	401460000	144560000	63908000	80655000	199880000	119470000	80409000	328410000	161360000	167050000	170380000	97043000	73339000	15457	1085	14659	93475;93476;93477;93478	126303;126304;126305	126303			3	
FGDYQCNSAMGISQMLK	1	Unmodified	1948.8481	0.84813909	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	79.009	78.158	2;3	7.5021E-08	69499	160511_QHF_FH_JSI10i_2	135.14	117.4			1.02	1.1893	15.905	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0207	1.2596	6.2719	2	0	Median	0.91181	0.93247	4.8884	2	0	Median	1.1368	1.239	7.6359	2	0	Median	193960000	96516000	97447000	0	0	0	63675000	28480000	35194000	85777000	43013000	42764000	44512000	25023000	19489000	15458	1818	14660	93479;93480;93481;93482;93483;93484;93485	126306;126307;126308;126309;126310;126311;126312;126313;126314;126315	126314			9	
FGEAIGMGFPVK	1	Unmodified	1251.6322	0.63217995	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							3	2	3	1	76.454	75.625	2	0.00015346	67342	160511_QHF_FH_JSI10i_2	99.815	91.58			1.7847	5.1087	76.921	6	6	Linear	8.766	7.2934	98.773	2	2	Median	5.9947	7.1234	85.17	2	2	Median	3.7835	3.7343	82.477	2	2	Median	NaN	NaN	NaN	0	0	Median	1489800000	277620000	1212200000	486550000	54489000	432060000	455570000	69884000	385680000	547730000	153240000	394480000	0	0	0	15459	2087	14661	93486;93487;93488;93489;93490;93491;93492;93493;93494	126316;126317;126318;126319;126320;126321;126322;126323;126324	126323			9	
FGEENIEVYHSYFWPLEWTIPSR	0	Unmodified	2898.3653	0.3653308	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.447	88.576	2;3	9.0906E-126	52399	160513_QHF_FH_JSI10Kac_6	322.43	286.68			0.93864	1.1047	27.085	5	0	Median	1.6649	1.406	NaN	1	0	Median	1.088	1.2908	22.023	2	0	Median	0.92302	0.8843	NaN	1	0	Median	0.78093	0.81978	NaN	1	0	Median	3627500000	1661000000	1966500000	788420000	263480000	524940000	1227100000	582340000	644780000	606010000	289040000	316970000	1005900000	526170000	479770000	15460	2778	14662	93495;93496;93497;93498;93499	126325;126326;126327;126328;126329;126330	126330			6	
FGEENIEVYHSYFWPLEWTIPSRDNNK	1	Unmodified	3369.5731	0.57309175	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	16	0									4	1		1	2	93.433	84.152	3;4	3.1517E-135	45526	160513_QHF_FH_JSI12Kac_6	255.68	248.11			1.0206	1.0332	16.021	4	0	Median	1.5316	1.2807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0461	0.99743	NaN	1	0	Median	0.9084	0.96585	14.511	2	0	Median	554960000	267780000	287180000	134120000	60586000	73534000	0	0	0	128740000	61195000	67550000	292100000	145990000	146100000	15461	2778	14663	93500;93501;93502;93503	126331;126332;126333;126334	126333			3	
FGEINDQDRTDR	0	Unmodified	1464.6593	0.65933399	5037	Q9NVM4	PRMT7	Protein arginine N-methyltransferase 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		18.197	18.197	3	0.031045	15154	160511_QHF_FH_JSI11i_3	31.728	23.318			1.409	1.3449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.409	1.3449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42005000	20089000	21915000	0	0	0	0	0	0	42005000	20089000	21915000	0	0	0	15462	5037	14664	93504	126335	126335			1	
FGELLNHVQQK	1	Unmodified	1311.6935	0.69353465	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	40.332	39.755	2;3	1.3087E-05	34864	160511_QHF_FH_JSI11i_3	107.47	91.926			1.9294	1.762	26.066	2	2	Median	1.7611	1.4654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1138	2.1186	NaN	1	1	Median	129160000	49017000	80139000	12917000	4862900	8054100	0	0	0	10773000	0	10773000	105470000	44154000	61312000	15463	2791	14665	93505;93506;93507;93508	126336;126337;126338;126339	126336			4	
FGELVAEEARR	0	Unmodified	1275.6571	0.65714914	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				36.643	35.599	3	0.051075	30955	160511_QHF_FH_JSI9i_2	15.652	1.6885			1.787	1.5106	NaN	1	0	Median	1.787	1.5106	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24972000	7333100	17639000	24972000	7333100	17639000	0	0	0	0	0	0	0	0	0	15464	1406	14666	93509	126340	126340			1	
FGELVMTK	1	Unmodified	923.47864	0.47863942	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.109	47.711	2	0.036037	40838	160511_QHF_FH_JSI12i_2	40.352	7.511			0.64346	0.73848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64346	0.73848	NaN	1	0	Median	310120000	192570000	117560000	0	0	0	0	0	0	0	0	0	310120000	192570000	117560000	15465	1507	14667	93510	126341	126341			1	
FGEPVLAGFAR	0	Unmodified	1162.6135	0.61349341	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	71.391	70.69	2	6.2998E-18	61917	160511_QHF_FH_JSI11i_2	157.91	114.66			0.91459	0.96517	18.163	6	1	Median	1.63	1.3835	NaN	1	0	Median	0.81018	1.006	NaN	1	0	Median	0.98594	0.979	16.317	2	0	Median	0.82426	0.8871	6.0649	2	1	Median	1539100000	780390000	758660000	212640000	88273000	124360000	325540000	198910000	126630000	612720000	293830000	318900000	388150000	199380000	188770000	15466	241	14668	93511;93512;93513;93514;93515;93516	126342;126343;126344;126345;126346;126347	126345			6	
FGESTTGFNFSFK	1	Unmodified	1467.667	0.66704513	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	79.156	78.658	2	1.7332E-07	68277	160511_QHF_FH_JSI12i_3	138.99	123.11			0.93547	0.89351	20.238	7	6	Median	1.0558	0.89351	NaN	1	1	Median	0.76517	0.94223	NaN	1	1	Median	0.77755	0.78852	25.622	3	3	Plateau	0.8489	0.8793	32.252	2	1	Median	364440000	186190000	178250000	29227000	15087000	14140000	46233000	28544000	17689000	160290000	78923000	81366000	128690000	63637000	65055000	15467	1685	14669	93517;93518;93519;93520;93521;93522;93523	126348;126349;126350;126351;126352;126353;126354;126355	126355			8	
FGEVLEISGK	1	Unmodified	1077.5706	0.57062555	4676	Q9H2J4	PDCL3	Phosducin-like protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.933	56.426	2	0.016374	48938	160511_QHF_FH_JSI11i_2	50.292	36.135			0.82253	0.82015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82253	0.82015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31403000	18419000	12984000	0	0	0	0	0	0	31403000	18419000	12984000	0	0	0	15468	4676	14670	93524	126356	126356			1	
FGEVVDCTLK	1	Unmodified	1166.5642	0.56415996	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	4	1	46.844	46.429	2	1.1389E-05	42967	160511_QHF_FH_JSI11i_1	103.7	0			1.8985	1.8234	26.289	3	2	Plateau	NaN	NaN	NaN	0	0	Median	2.518	2.9772	NaN	1	1	Median	1.963	1.8984	5.6976	2	1	Median	NaN	NaN	NaN	0	0	Median	2080300000	500850000	1579500000	0	0	0	906640000	161460000	745180000	1173700000	339390000	834280000	0	0	0	15469	2488	14671	93525;93526;93527;93528;93529;93530;93531;93532	126357;126358;126359;126360;126361;126362;126363;126364;126365	126357			9	
FGEYHKDDPSSFR	1	Acetyl (K)	1625.711	0.71103521	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.215	41.495	3	0.014209	22480	160513_QHF_FH_JSI11Kac_6	34.92	29.842			0.3661	0.34643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3661	0.34643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9966800	7244100	2722600	0	0	0	0	0	0	9966800	7244100	2722600	0	0	0	15470	2674	14672	93533	126366	126366	2621		1	
FGFAESIANQR	0	Unmodified	1238.6044	0.60438529	2243	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.935	53.371	2	6.3688E-05	44594	160511_QHF_FH_JSI10i_3	101.9	89.66			2.9293	2.7944	14.131	2	2	Median	3.7958	3.088	NaN	1	1	Median	2.2606	2.5287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194330000	49413000	144920000	60084000	12007000	48076000	134250000	37406000	96844000	0	0	0	0	0	0	15471	2243	14673	93534;93535	126367;126368	126367			2	
FGFAIGSQTTK	1	Unmodified	1155.5924	0.59242362	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.39		4	4					2	3	4	4	4	1	58.919	54.409	2	4.3185E-07	46674	160511_QHF_FH_JSI12i_3	117.01	107.23			0.95947	0.95014	23.554	12	3	Median	1.8635	1.5445	32.298	4	1	Linear	0.85724	1.0154	12.61	4	0	Median	0.95206	0.94048	19.338	3	2	Median	0.81684	0.823	NaN	1	0	Median	3117200000	1488300000	1628900000	520050000	193660000	326390000	758960000	372140000	386820000	1050000000	535210000	514760000	788230000	387320000	400910000	15472	3793	14674	93536;93537;93538;93539;93540;93541;93542;93543;93544;93545;93546;93547;93548	126369;126370;126371;126372;126373;126374;126375;126376;126377;126378;126379;126380;126381;126382;126383;126384;126385;126386;126387;126388;126389;126390;126391	126390			23	
FGFAIGSQTTKK	2	Unmodified	1283.6874	0.68738664	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			44.712	43.139	3	0.020822	35996	160511_QHF_FH_JSI10i_3	29.115	20.715			1.4592	1.3978	2.2724	2	0	Median	1.7333	1.4205	NaN	1	0	Median	1.2284	1.3756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202730000	95918000	106810000	98244000	45453000	52790000	104490000	50465000	54022000	0	0	0	0	0	0	15473	3793	14675	93549;93550	126392;126393	126392			2	
FGFEIIETKK	2	Unmodified	1210.6598	0.6597749	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	62.5	61.699	3	0.00012143	52803	160511_QHF_FH_JSI12i_3	72.652	63.698			0.81972	0.91392	31.172	7	1	Median	1.0041	0.85168	33.083	2	1	Median	0.75048	0.89039	3.6886	2	0	Median	1.4174	1.3923	37.156	2	0	Median	0.80087	0.82364	NaN	1	0	Median	769150000	397670000	371480000	53400000	24064000	29336000	119550000	60457000	59091000	213660000	75564000	138100000	382540000	237590000	144950000	15474	4614	14676	93551;93552;93553;93554;93555;93556;93557	126394;126395;126396;126397;126398;126399;126400;126401;126402;126403	126402			10	
FGFELPQGPLGTSFK	1	Unmodified	1623.8297	0.82969378	4697	Q9H3M7	TXNIP	Thioredoxin-interacting protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	100.18	100.16	2	0.00022032	86740	160511_QHF_FH_JSI12i_3	85.813	68.004			1.133	1.068	24.361	3	2	Median	1.5417	1.3474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.133	1.068	NaN	1	1	Median	0.80289	0.82791	NaN	1	0	Median	54249000	22479000	31770000	18838000	7344000	11494000	0	0	0	11999000	5428300	6570600	23412000	9706500	13705000	15475	4697	14677	93558;93559;93560	126404;126405;126406;126407	126407			4	
FGFELVK	1	Unmodified	838.45889	0.45889025	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	67.442	66.545	2	0.032748	57280	160511_QHF_FH_JSI12i_2	50.966	25.967			0.79411	0.83781	17.245	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68442	0.83781	NaN	1	0	Median	0.79411	0.77956	NaN	1	0	Median	0.99381	1.0823	NaN	1	0	Median	126060000	64683000	61374000	0	0	0	32981000	15547000	17434000	55167000	28523000	26644000	37909000	20612000	17296000	15476	2904	14678	93561;93562;93563	126408;126409	126408			2	
FGFGFGGTGK	1	Unmodified	973.46577	0.46576654	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	2	2	3	59.107	58.229	2	8.8468E-05	51514	160511_QHF_FH_JSI11i_3	85.731	36.313			1.0932	1.0981	33.221	8	3	Median	1.6083	1.3315	35.909	2	1	Median	1.1045	1.3047	15.726	2	1	Median	1.0521	1.0517	16.504	2	0	Median	0.6838	0.71363	29.776	2	1	Median	2386200000	1114700000	1271500000	524670000	204230000	320450000	435160000	203490000	231660000	654300000	279520000	374780000	772030000	427450000	344580000	15477	3828	14679	93564;93565;93566;93567;93568;93569;93570;93571;93572;93573	126410;126411;126412;126413;126414;126415;126416;126417;126418	126411			9	
FGFGFGGTGKK	2	Unmodified	1101.5607	0.56072956	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		45.854	44.585	2;3	5.8778E-05	36657	160511_QHF_FH_JSI9i_3	89.08	62.477			0.99325	0.98447	14.385	5	1	Median	1.2009	0.95905	3.6998	2	0	Median	0.9679	1.119	4.7045	2	1	Median	0.86472	0.79626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1736700000	915700000	821000000	727770000	345890000	381880000	646040000	378500000	267550000	362890000	191320000	171570000	0	0	0	15478	3828	14680	93574;93575;93576;93577;93578	126419;126420;126421;126422;126423;126424;126425;126426	126426			8	
FGFGFGNGMK	1	Unmodified	1060.48	0.4800364	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.463	64.967	2	0.00041743	54440	160511_QHF_FH_JSI10i_3	75.213	61.055			1.3848	1.3711	6.9158	2	0	Median	1.746	1.4398	NaN	1	0	Median	1.0983	1.3056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123590000	43086000	80504000	68098000	19597000	48501000	55491000	23488000	32002000	0	0	0	0	0	0	15479	5415	14681	93579;93580	126427;126428;126429;126430	126428			4	
FGFIFNCDIK	1	Unmodified	1259.6009	0.60087982	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.781	84.609	2	0.0017273	75464	160511_QHF_FH_JSI11i_3	68.224	43.448			1.3725	1.3896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3725	1.3896	NaN	1	1	Median	29058000	13685000	15373000	0	0	0	0	0	0	0	0	0	29058000	13685000	15373000	15480	134	14682	93581;93582	126431;126432	126431			2	
FGFIGFK	1	Unmodified	814.43776	0.43776088	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	72.169	71.588	2	0.045601	60198	160511_QHF_FH_JSI10i_3	44.611	27.684			0.83695	0.98549	37.009	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83695	0.98549	NaN	1	0	Median	1.2248	1.1578	NaN	1	0	Median	0.60746	0.57139	NaN	1	0	Median	72080000	32320000	39760000	0	0	0	17036000	8028200	9007700	22806000	7663500	15142000	32238000	16629000	15610000	15481	5621	14683	93583;93584;93585	126433;126434	126434			2	
FGFIVIDGSGALFGTLQGNTR	0	Unmodified	2169.1219	0.12185306	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		14.3	2.36				2					4	1	2	3		96.724	88.188	2;3	7.0125E-29	49683	160513_QHF_FH_JSI11Kac_6	203.04	191.6			0.9882	0.96117	58.384	5	0	Median	0.98627	0.8543	NaN	1	0	Median	0.32923	0.39522	NaN	1	0	Median	1.7725	1.689	30.835	3	0	Plateau	NaN	NaN	NaN	0	0	Median	451200000	196940000	254260000	84701000	34926000	49775000	95007000	70855000	24152000	271490000	91156000	180340000	0	0	0	15482	2010	14684	93586;93587;93588;93589;93590;93591	126435;126436;126437;126438;126439;126440;126441;126442;126443	126435			9	
FGFPAFSGISR	0	Unmodified	1184.5978	0.59784335	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	82.044	81.339	2	0.00032226	68313	160511_QHF_FH_JSI10i_3	82.645	77.68			0.83643	0.85763	25.956	4	0	Median	1.2711	1.0512	NaN	1	0	Median	0.8186	0.9382	NaN	1	0	Median	0.85464	0.78398	NaN	1	0	Median	0.55394	0.57967	NaN	1	0	Median	261960000	148810000	113150000	71302000	30166000	41137000	74113000	46818000	27295000	69634000	43064000	26570000	46912000	28762000	18151000	15483	1791	14685	93592;93593;93594;93595	126444;126445;126446;126447	126445			4	
FGFPEGSVELYAEK	1	Unmodified	1571.7508	0.75077476	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.606	78.802	2	0.0003305	67924	160511_QHF_FH_JSI12i_2	79.741	54.524			0.89399	0.99463	34.839	4	0	Median	1.843	1.5731	NaN	1	0	Median	0.80878	0.98964	NaN	1	0	Median	0.98817	0.99965	NaN	1	0	Median	0.59577	0.67098	NaN	1	0	Median	443160000	225660000	217500000	113250000	40196000	73051000	76649000	42783000	33867000	167280000	86393000	80883000	85986000	56285000	29701000	15484	1227	14686	93596;93597;93598;93599	126448;126449;126450;126451;126452;126453;126454	126448			7	
FGFSLPYVQYFGGVSALSK	1	Unmodified	2066.0513	0.051313874	1072	P15291	B4GALT1	Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.15	102.15	2	0.038876	91270	160511_QHF_FH_JSI11i_3	39.016	17.466			1.1382	1.0687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1382	1.0687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45735000	13528000	32207000	0	0	0	0	0	0	45735000	13528000	32207000	0	0	0	15485	1072	14687	93600	126455	126455			1	
FGFSTLALVEK	1	Unmodified	1210.6598	0.6597749	4342	Q9BPZ7	MAPKAP1	Target of rapamycin complex 2 subunit MAPKAP1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.26	86.108	2	0.0090958	74853	160511_QHF_FH_JSI12i_3	58.743	42.862			0.46477	0.46732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46477	0.46732	NaN	1	1	Median	28362000	19080000	9282200	0	0	0	0	0	0	0	0	0	28362000	19080000	9282200	15486	4342	14688	93601	126456	126456			1	
FGFVDAQK	1	Unmodified	910.45487	0.45486751	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	33.117	32.439	2;3	0.00033075	35423	160511_QHF_FH_JSI12i_2	111.82	97.403			0.83809	0.80048	13.8	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.69898	0.86395	NaN	1	0	Median	0.7307	0.74168	NaN	1	0	Median	0.71413	0.76326	20.79	2	0	Median	918310000	468800000	449510000	0	0	0	182360000	103370000	78994000	271890000	149070000	122820000	464060000	216370000	247700000	15487	3101	14689	93602;93603;93604;93605	126457;126458;126459;126460;126461;126462;126463	126457			7	
FGFVHDLVLYLYR	0	Unmodified	1640.8715	0.87149902	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									4	1	2	1		92.41	84.989	2;3	3.8422E-17	49221	160513_QHF_FH_JSI10Kac_6	137.59	119.48			0.6787	0.8008	39.505	4	0	Median	0.67465	0.58408	NaN	1	0	Median	0.67774	0.8008	2.5995	2	0	Median	1.5141	1.4978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	312800000	185970000	126830000	47839000	26379000	21460000	226690000	143840000	82849000	38269000	15748000	22521000	0	0	0	15488	1807	14690	93606;93607;93608;93609	126464;126465;126466;126467;126468	126467			5	
FGFYEVFK	1	Unmodified	1035.5066	0.50656873	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	82.365	79.128	2	0.00032001	72813	160511_QHF_FH_JSI10i_2	112.17	95.395			1.0626	1.1064	28.256	12	1	Median	1.3376	1.1363	12.249	3	1	Plateau	0.93595	1.065	6.9937	3	0	Median	1.204	1.2075	7.6315	3	0	Median	0.64631	0.64886	8.9692	3	0	Median	4253800000	2026700000	2227100000	662510000	262940000	399570000	1329500000	636670000	692840000	1273300000	500180000	773140000	988450000	626940000	361500000	15489	2146	14691	93610;93611;93612;93613;93614;93615;93616;93617;93618;93619;93620;93621	126469;126470;126471;126472;126473;126474;126475;126476;126477;126478;126479;126480;126481;126482;126483;126484;126485;126486;126487;126488;126489;126490;126491;126492;126493;126494;126495;126496;126497;126498	126491			30	
FGGAAVFPNQEQAR	0	Unmodified	1490.7266	0.72662569	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.64	3	7	2							2	4	4	2	47.215	46.503	2	6.3024E-05	41227	160511_QHF_FH_JSI11i_3	117.52	100.85			0.66435	0.71849	19.686	10	9	Median	0.73242	0.63193	21.29	2	2	Median	0.49074	0.59676	23.121	2	2	Median	0.7077	0.81217	12.989	4	3	Linear	0.59517	0.64789	26.972	2	2	Median	579320000	321710000	257610000	86379000	45156000	41222000	142340000	94855000	47480000	242040000	118620000	123420000	108570000	63076000	45491000	15490	1167	14692	93622;93623;93624;93625;93626;93627;93628;93629;93630;93631;93632;93633	126499;126500;126501;126502;126503;126504;126505;126506;126507;126508;126509;126510;126511	126500			13	
FGGALDAAAK	1	Unmodified	919.47633	0.47633123	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.41	3	5	4				1	1		4	5	3	2	31.737	29.626	2	3.7324E-05	26468	160511_QHF_FH_JSI11i_1	95.358	50.277			1.1141	1.0164	60.556	14	5	Median	1.1141	0.92254	83.157	4	2	Median	0.93589	1.0944	73.644	5	3	Median	1.1779	1.1242	39.957	3	0	Median	0.92216	0.99654	31.172	2	0	Median	4237800000	2203200000	2034600000	662480000	314800000	347680000	1459700000	799020000	660720000	1133600000	550720000	582830000	982020000	538700000	443320000	15491	1798	14693	93634;93635;93636;93637;93638;93639;93640;93641;93642;93643;93644;93645;93646;93647	126512;126513;126514;126515;126516;126517;126518;126519;126520;126521;126522;126523;126524;126525;126526;126527;126528	126514			17	
FGGEHVPNSPFQVTALAGDQPSVQPPLR	0	Unmodified	2944.4832	0.48315453	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	4	3	3	87.44	86.878	3;4	7.7094E-43	75289	160511_QHF_FH_JSI12i_3	181.92	176.25			1.0673	1.0149	26.548	12	4	Median	1.3576	1.1438	18.755	2	0	Median	1.0673	1.2168	16.447	4	2	Median	1.0944	1.0282	16.679	3	1	Median	0.74655	0.75659	18.074	3	1	Median	2894000000	1416700000	1477300000	635880000	273430000	362450000	693650000	312250000	381400000	1102700000	553600000	549100000	461760000	277440000	184320000	15492	1192	14694	93648;93649;93650;93651;93652;93653;93654;93655;93656;93657;93658;93659	126529;126530;126531;126532;126533;126534;126535;126536;126537;126538;126539;126540;126541;126542;126543;126544;126545;126546;126547;126548	126545			20	
FGGGNPELLTQMVSK	1	Unmodified	1576.7919	0.79192806	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	4	3	75.93	75.178	2;3	2.843E-21	66166	160511_QHF_FH_JSI11i_2	190.1	179.58			0.87847	0.94838	23.222	7	1	Median	1.2214	1.0396	NaN	1	0	Median	0.79358	0.97913	NaN	1	0	Median	0.87847	0.89511	27.126	3	1	Plateau	0.6651	0.7433	0.21007	2	0	Median	813610000	436880000	376730000	145650000	67354000	78296000	164580000	97715000	66862000	319680000	161360000	158310000	183710000	110450000	73260000	15493	1507	14695	93660;93661;93662;93663;93664;93665;93666;93667;93668;93669	126549;126550;126551;126552;126553;126554;126555;126556;126557;126558;126559;126560;126561;126562;126563;126564;126565;126566;126567;126568;126569;126570	126563			22	
FGGLAAGEDNGQR	0	Unmodified	1290.5953	0.59527717	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										3	1	26.594	25.984	2	2.5306E-09	21926	160511_QHF_FH_JSI11i_2	105.86	91.19			0.79283	0.87033	48.46	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61433	0.60221	61.584	2	1	Median	0.79283	0.87033	NaN	1	0	Median	196860000	105440000	91417000	0	0	0	0	0	0	138590000	77572000	61015000	58271000	27869000	30402000	15494	93	14696	93670;93671;93672;93673	126571;126572;126573;126574	126574			4	
FGGNPGGFGNQGGFGNSR	0	Unmodified	1725.7608	0.76077937	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							2	2	3	1	46.901	45.952	2	4.5141E-82	38190	160511_QHF_FH_JSI10i_3	251.84	234.72			0.97891	0.95975	6.4627	6	0	Median	1.1548	0.95975	1.7963	2	0	Median	0.78824	0.93815	5.8084	2	0	Median	0.97891	0.95251	12.903	2	0	Median	NaN	NaN	NaN	0	0	Median	489510000	248980000	240530000	220250000	91802000	128440000	190220000	114970000	75247000	79043000	42206000	36838000	0	0	0	15495	2360	14697	93674;93675;93676;93677;93678;93679;93680;93681	126575;126576;126577;126578;126579;126580;126581;126582;126583;126584;126585;126586;126587;126588;126589	126579			15	
FGGPGAR	0	Unmodified	660.33436	0.33435844	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	8.7289	8.3942	2	0.0097258	6000	160511_QHF_FH_JSI10i_3	77.906	67.6			0.96942	0.9361	31.63	7	0	Median	1.5968	1.33	13.14	2	0	Median	0.98648	1.1442	NaN	1	0	Median	0.93093	0.92814	1.2089	2	0	Median	0.60572	0.63772	5.5756	2	0	Median	6556600000	3213900000	3342700000	1701500000	621030000	1080400000	1081800000	504500000	577260000	1976000000	1002100000	973900000	1797400000	1086300000	711110000	15496	1987	14698	93682;93683;93684;93685;93686;93687;93688;93689	126590;126591;126592;126593;126594;126595;126596;126597;126598;126599;126600	126592			11	
FGGSGGMNHVSGMQATTPQGSNYALK	1	Unmodified	2596.1799	0.17985499	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			51.872	50.294	3	0.00046395	42025	160511_QHF_FH_JSI10i_3	43.888	40.294			0.93033	1.0951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93033	1.0951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20470000	8020600	12450000	4392200	0	4392200	16078000	8020600	8057600	0	0	0	0	0	0	15497	2686	14699	93690;93691	126601;126602;126603	126601			3	
FGGSGSQVDSAR	0	Unmodified	1166.5316	0.53161428	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.18	4	4	2				3	3		2	4	5	5	15.55	11.998	2	4.1557E-11	10315	160511_QHF_FH_JSI12i_2	151.15	129.68			0.99981	1.0576	15.052	16	0	Median	1.5154	1.2741	11.287	2	0	Median	0.883	1.0638	8.0578	4	0	Median	1.1095	1.1066	10.494	5	0	Median	0.83806	0.88391	8.4535	5	0	Median	2347800000	1170000000	1177700000	405610000	172980000	232630000	571440000	307770000	263670000	805240000	387270000	417970000	565470000	302010000	263460000	15498	2370	14700	93692;93693;93694;93695;93696;93697;93698;93699;93700;93701;93702;93703;93704;93705;93706;93707	126604;126605;126606;126607;126608;126609;126610;126611;126612;126613;126614;126615;126616;126617;126618;126619;126620;126621	126608			18	
FGGSYIVQGLK	1	Unmodified	1167.6288	0.62880913	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.721	59.453	2	0.033015	51153	160511_QHF_FH_JSI12i_3	39.222	28.991			0.97978	1	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97978	1	NaN	1	0	Median	50759000	26066000	24694000	0	0	0	0	0	0	0	0	0	50759000	26066000	24694000	15499	5447	14701	93708	126622	126622			1	
FGGVQELLNQQK	1	Unmodified	1359.7147	0.71466402	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			63.212	62.314	2	0.00086172	55224	160511_QHF_FH_JSI10i_2	67.207	30.692			1.7425	1.8208	0.1268	2	1	Median	2.0936	1.8191	NaN	1	1	Median	1.4503	1.8224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82522000	36579000	45943000	41822000	18348000	23474000	40700000	18231000	22469000	0	0	0	0	0	0	15500	5647	14702	93709;93710	126623;126624	126624			2	
FGHEFLEFEFRPDGK	1	Unmodified	1853.8737	0.87368386	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	76.207	76.069	4	0.00020033	68158	160511_QHF_FH_JSI11i_3	67.358	62.89			0.83721	0.83071	47.063	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3026	1.2264	4.3106	2	0	Median	0.52564	0.54585	8.6107	2	0	Median	83804000	44928000	38876000	0	0	0	0	0	0	46641000	21838000	24803000	37163000	23090000	14073000	15501	1952;3963	14703	93711;93712;93713;93714	126625;126626;126627;126628;126629	126628			5	
FGHLGLAINLITYDDRFNLK	1	Unmodified	2319.2376	0.23755152	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	1	3			87.113	80.665	2;3;4	2.1074E-22	45757	160513_QHF_FH_JSI10Kac_6	192.65	153.65			1.3443	1.5875	78.367	3	1	Plateau	0.75688	0.65187	NaN	1	0	Median	0.61212	0.72689	110.47	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	485620000	289030000	196600000	109510000	54622000	54888000	376110000	234410000	141710000	0	0	0	0	0	0	15502	1271	14704	93715;93716;93717;93718	126630;126631;126632;126633;126634	126634			5	
FGHTFCK	1	Unmodified	895.40106	0.4010578	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	14.125	14.198	3	0.048677	10972	160511_QHF_FH_JSI12i_3	26.962	18.622			0.49065	0.4901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49065	0.4901	NaN	1	1	Median	75965000	41058000	34907000	0	0	0	0	0	0	0	0	0	75965000	41058000	34907000	15503	2152	14705	93719	126635	126635			1	
FGHVDQENSPSFMFQGSSNTEFK	1	Unmodified	2619.1336	0.13361631	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	1	1	3	68.391	67.934	3	3.8385E-17	60369	160511_QHF_FH_JSI10i_2	134.29	131.37			1.1334	0.99082	17.122	5	2	Median	1.1571	0.99082	NaN	1	0	Median	0.77038	0.9395	NaN	1	0	Median	1.2436	1.1633	NaN	1	0	Median	0.9339	0.94197	28.908	2	2	Median	334190000	172570000	161620000	37868000	17440000	20428000	51812000	28630000	23182000	141490000	70009000	71476000	103020000	56490000	46533000	15504	1685	14706	93720;93721;93722;93723;93724;93725;93726	126636;126637;126638;126639;126640;126641;126642;126643;126644;126645;126646;126647	126642			12	
FGIAAKYQIDPDACFSAK	2	Acetyl (K)	2042.9772	0.97716265	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.853	74.538	2	7.9646E-15	41186	160513_QHF_FH_JSI11Kac_6	136.99	122.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15505	1195	14707	93727	126648	126648	1065		1	
FGIDDQDYQNSVTR	0	Unmodified	1656.738	0.73797824	2088	P78356	PIP4K2B	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.038	51.366	2	0.00029238	46300	160511_QHF_FH_JSI10i_1	103.08	89.492			1.0548	1.1615	51.402	4	4	Median	2.1007	1.7257	NaN	1	1	Median	0.72923	0.85484	NaN	1	1	Median	0.60637	0.58572	NaN	1	1	Median	1.5258	1.5783	NaN	1	1	Median	142130000	73030000	69102000	35934000	14490000	21443000	42529000	23714000	18815000	28577000	19685000	8891200	35092000	15140000	19952000	15506	2088	14708	93728;93729;93730;93731	126649;126650;126651;126652	126651			4	
FGIGDGNLQYYLYNWK	1	Unmodified	1949.9312	0.93119874	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.82		2							7	3	1	2	3	94.765	87.952	2;3	1.408E-159	45273	160513_QHF_FH_JSI12Kac_6	332.96	301.36			0.94528	1	40.607	9	1	Median	1.4876	1.2943	50.103	3	1	Median	0.76147	0.91289	NaN	1	0	Median	0.87555	0.83404	2.4163	2	0	Median	0.94528	1	26.614	3	0	Median	2038600000	1000900000	1037700000	606200000	255890000	350310000	261570000	131440000	130130000	483020000	270290000	212730000	687820000	343300000	344520000	15507	1351	14709	93732;93733;93734;93735;93736;93737;93738;93739;93740	126653;126654;126655;126656;126657;126658;126659;126660;126661;126662;126663;126664;126665;126666;126667;126668;126669;126670	126666			18	
FGIIMRDPQTEEFK	1	Unmodified	1709.8447	0.84469192	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		64.532	63.956	2;3	0.00036583	56583	160511_QHF_FH_JSI11i_3	50.102	43.486			0.75328	0.77827	34.798	4	1	Median	0.93349	0.80384	NaN	1	0	Median	0.60786	0.75351	NaN	1	0	Median	0.69963	0.66986	58.196	2	1	Median	NaN	NaN	NaN	0	0	Median	529780000	253530000	276250000	59141000	27865000	31276000	69754000	42098000	27655000	400890000	183560000	217320000	0	0	0	15508	366	14710	93741;93742;93743;93744;93745	126671;126672;126673;126674	126671			4	
FGIQAQMVTTDFQK	1	Unmodified	1612.7919	0.79192806	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.95	0.74	6	9	5							5	5	5	5	74.136	73.49	2;3	7.3497E-40	63434	160511_QHF_FH_JSI12i_2	199.43	184.76			1.0073	1.1237	32.89	18	6	Median	2.052	1.7453	16.218	3	2	Plateau	1.0267	1.1967	30.506	5	2	Median	1.1685	1.1135	15.285	5	1	Median	0.7143	0.78326	17.255	5	1	Median	2059800000	943000000	1116800000	400060000	152550000	247510000	580850000	277080000	303770000	641340000	285650000	355690000	437510000	227710000	209800000	15509	1672	14711	93746;93747;93748;93749;93750;93751;93752;93753;93754;93755;93756;93757;93758;93759;93760;93761;93762;93763;93764;93765	126675;126676;126677;126678;126679;126680;126681;126682;126683;126684;126685;126686;126687;126688;126689;126690;126691;126692;126693;126694;126695;126696;126697;126698;126699;126700;126701;126702;126703;126704;126705	126679			31	
FGIQAQMVTTDFQK	1	Oxidation (M)	1628.7868	0.78684269	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.4		5					1	5		2	4	3	2	71.071	62.78	2;3	0.0020812	33440	160513_QHF_FH_JSI11Kac_5	63.073	48.838			0.82334	0.92248	24.827	8	3	Median	1.6998	1.3631	NaN	1	1	Median	0.63213	0.73076	20.898	3	0	Median	1.0101	0.98157	6.2444	2	0	Median	0.78629	0.83309	15.89	2	2	Median	42439000	21318000	21121000	2519700	613410	1906300	4690300	2675100	2015200	5585200	2254000	3331300	29644000	15776000	13868000	15510	1672	14711	93766;93767;93768;93769;93770;93771;93772;93773;93774;93775;93776	126706;126707;126708;126709;126710;126711;126712;126713;126714	126711		1357	8	
FGISEPGNQEK	1	Unmodified	1204.5724	0.57241646	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	1	3		32.387	32.049	2	1.3966E-05	27088	160511_QHF_FH_JSI11i_2	128.86	95.965			1.3686	1.4835	50.503	4	4	Median	NaN	NaN	NaN	0	0	Median	1.4019	1.625	NaN	1	1	Median	1.3361	1.3544	57.971	3	3	Median	NaN	NaN	NaN	0	0	Median	350560000	178670000	171890000	0	0	0	115540000	60192000	55350000	235010000	118480000	116540000	0	0	0	15511	1685;31;191	14712	93777;93778;93779;93780;93781	126715;126716;126717;126718;126719	126718			5	
FGISSVPTK	1	Unmodified	934.51238	0.51238239	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.06	4	4	4					4	1	5	4	4	4	47.078	43.458	2	0.00055425	37343	160511_QHF_FH_JSI11i_2	78.516	59.734			1.091	1.0839	15.475	17	0	Median	1.3919	1.1722	5.2807	5	0	Median	0.84473	1.0225	17.931	4	0	Median	1.1107	1.124	13.59	4	0	Median	0.93475	0.99441	16.663	4	0	Median	3122500000	1511800000	1610800000	526980000	208970000	318010000	742440000	410960000	331480000	1122500000	509110000	613380000	730640000	382720000	347920000	15512	2117	14713	93782;93783;93784;93785;93786;93787;93788;93789;93790;93791;93792;93793;93794;93795;93796;93797;93798	126720;126721;126722;126723;126724;126725;126726;126727;126728;126729;126730;126731;126732;126733;126734;126735;126736;126737;126738;126739;126740	126736			21	
FGIVTSSAGTGTTEDTEAK	1	Unmodified	1870.8796	0.87961668	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								4	3	2	1	45.922	45.134	2	2.2265E-82	40700	160511_QHF_FH_JSI11i_1	247.32	232.29			0.94368	0.95648	23.506	6	2	Median	1.2917	1.0996	10.263	2	1	Median	0.59174	0.70926	23.858	2	1	Median	1.0527	1.0191	NaN	1	0	Median	0.84598	0.89774	NaN	1	0	Median	784800000	382820000	401980000	170650000	62154000	108500000	190370000	106360000	84008000	217000000	101490000	115510000	206780000	112820000	93960000	15513	2117	14714	93799;93800;93801;93802;93803;93804;93805;93806;93807;93808	126741;126742;126743;126744;126745;126746;126747;126748;126749;126750;126751;126752;126753;126754;126755;126756;126757	126741			17	
FGIVTSSAGTGTTEDTEAKK	2	Unmodified	1998.9746	0.9745797	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	37.892	37.499	3	6.6521E-09	31801	160511_QHF_FH_JSI12i_3	108.45	98.866			0.99693	0.81169	25.187	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.52342	0.64977	NaN	1	1	Median	1.0648	1.008	NaN	1	0	Median	0.66421	0.65359	NaN	1	0	Median	169440000	101710000	67732000	0	0	0	29694000	18751000	10943000	96321000	55453000	40868000	43427000	27506000	15921000	15514	2117	14715	93809;93810;93811;93812	126758;126759;126760;126761;126762;126763	126763			6	
FGKEVAVK	2	Acetyl (K)	918.51747	0.51746776	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		44.276	34.119	2	0.015943	20412	160513_QHF_FH_JSI11Kac_4	66.299	40.194			0.61602	0.66133	113	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2478	1.4704	NaN	1	0	Median	0.30411	0.29745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41587000	30901000	10686000	0	0	0	7039100	2849000	4190100	34548000	28052000	6495700	0	0	0	15515	2094	14716	93813;93814	126764	126764	2190		1	
FGKEWAHATIIPK	2	Acetyl (K)	1538.8245	0.82454882	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.315	63.932	3	0.0051732	34690	160513_QHF_FH_JSI11Kac_6	46.318	34.704			0.55725	0.54122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55725	0.54122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99706000	59063000	40643000	0	0	0	0	0	0	99706000	59063000	40643000	0	0	0	15516	1345	14717	93815	126765	126765	1280		1	
FGKGGQAHR	1	Acetyl (K)	998.50461	0.50461167	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1	By matching	By MS/MS		By matching	16	0									3	1	1		1	10.517	3.508	3	0.0011335	3946	160513_QHF_FH_JSI10Kac_6	70.056	52.499			0.79897	0.9643	34.925	3	0	Median	1.573	1.3685	NaN	1	0	Median	0.79897	0.9643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63051	0.68058	NaN	1	0	Median	29035000	15952000	13083000	2820800	1112000	1708900	20430000	11177000	9253800	0	0	0	5783500	3663600	2119900	15517	1367	14718	93816;93817;93818	126766	126766	1299		1	
FGKHGGTIPIVPTAEFQDR	1	Acetyl (K)	2111.08	0.079988241	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.774	68.34	3	1.7328E-09	35707	160513_QHF_FH_JSI12Kac_6	111.65	106.07			0.88293	0.88836	26.063	4	0	Median	1.191	1.0261	NaN	1	0	Median	1.0452	1.239	NaN	1	0	Median	0.74584	0.70405	NaN	1	0	Median	0.74148	0.76912	NaN	1	0	Median	611940000	317350000	294590000	108990000	51173000	57820000	164810000	78546000	86267000	219920000	117160000	102760000	118210000	70473000	47740000	15518	762	14719	93819;93820;93821;93822	126767;126768;126769;126770;126771	126770	372		5	
FGKPDPIVSVIFK	2	Unmodified	1445.8282	0.82823722	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	1	5	82.335	81.613	2;3	1.2626E-08	70751	160511_QHF_FH_JSI12i_3	110.31	99.548			0.74804	0.77036	16.255	6	6	Median	1.1125	0.90818	9.9721	2	2	Median	0.64167	0.75237	NaN	1	1	Median	0.85338	0.78878	NaN	1	1	Median	0.62854	0.64349	4.7645	2	2	Median	1457900000	704920000	752990000	284690000	123000000	161690000	215560000	115220000	100340000	372910000	152030000	220880000	584760000	314680000	270080000	15519	5161	14720	93823;93824;93825;93826;93827;93828;93829;93830;93831;93832;93833	126772;126773;126774;126775;126776;126777;126778;126779;126780;126781;126782;126783;126784;126785;126786	126784			15	
FGKPELPR	1	Unmodified	942.5287	0.52870115	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			29.631	28.269	3	0.022251	23480	160511_QHF_FH_JSI10i_3	31.76	17.091			0.93784	0.91287	21.706	2	0	Median	1.3149	1.0643	NaN	1	0	Median	0.66891	0.78298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62326000	27861000	34465000	36824000	14294000	22531000	25502000	13567000	11934000	0	0	0	0	0	0	15520	229	14721	93834;93835	126787	126787			1	
FGLALAVAGGVVNSALYNVDAGHR	0	Unmodified	2370.2444	0.24442781	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.692	85.32	3	4.8273E-74	50017	160513_QHF_FH_JSI10Kac_6	252.4	234.72			0.87211	0.98199	106.14	8	8	Median	0.92017	0.79967	116.93	2	2	Median	0.55817	0.66751	133.58	2	2	Median	1.6936	1.6123	170.62	2	2	Median	1.04	1.1073	95.969	2	2	Median	2140800000	1197500000	943370000	522660000	260330000	262340000	1130600000	791940000	338630000	335670000	86017000	249660000	151930000	59188000	92745000	15521	1424	14722	93836;93837;93838;93839;93840;93841;93842;93843	126788;126789;126790;126791;126792;126793;126794;126795	126795			8	
FGLCAYMSQGR	0	Unmodified	1288.5693	0.56926211	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.667	58.135	2	0.0054863	48665	160511_QHF_FH_JSI10i_3	53.327	49.028			1.2384	1.197	6.7332	2	0	Median	1.54	1.2553	NaN	1	0	Median	0.99584	1.1413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52233000	26049000	26184000	18560000	7897800	10662000	33673000	18151000	15522000	0	0	0	0	0	0	15522	1283	14723	93844;93845	126796;126797;126798	126796			3	
FGLESHAHTIQICK	1	Unmodified	1639.8141	0.81406049	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4		4	3	1	48.288	43.624	3;4	2.458E-05	37104	160511_QHF_FH_JSI12i_3	96.371	84.679			0.96411	0.94679	47.445	8	5	Median	NaN	NaN	NaN	0	0	Median	0.89074	1.0426	69.365	4	3	Median	0.95583	0.93845	20.893	3	2	Median	0.97246	0.99079	NaN	1	0	Median	979140000	518050000	461100000	0	0	0	83222000	38969000	44253000	489340000	274620000	214720000	406580000	204460000	202120000	15523	3634	14724	93846;93847;93848;93849;93850;93851;93852;93853	126799;126800;126801;126802;126803;126804;126805;126806;126807	126803			9	
FGLFAPIHK	1	Unmodified	1028.5807	0.58073672	5265	Q9UDT6	CLIP2	CAP-Gly domain-containing linker protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	62.227	61.336	3	0.00044587	50524	160511_QHF_FH_JSI9i_3	70.919	49.455			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15524	5265	14725	93854;93855	126808;126809	126808			2	
FGLFTPGSR	0	Unmodified	980.50797	0.50796571	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.797	58.265	2	0.002638	47771	160511_QHF_FH_JSI9i_3	73.26	43.884			0.69771	0.66512	31.391	2	0	Median	1.0246	0.83042	NaN	1	0	Median	0.47512	0.53272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61505000	33560000	27946000	38821000	20469000	18352000	22685000	13091000	9593900	0	0	0	0	0	0	15525	1456	14726	93856;93857	126810;126811	126811			2	
FGLIQSMK	1	Unmodified	922.49462	0.49462383	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	54.862	54.006	2	0.00028113	46229	160511_QHF_FH_JSI12i_3	113.7	84.547			1.0838	1.0406	19.856	5	0	Median	1.7522	1.4118	NaN	1	0	Median	0.98298	1.1653	28.13	2	0	Median	1.0838	1.0406	NaN	1	0	Median	0.95597	0.97761	NaN	1	0	Median	936160000	429950000	506200000	176740000	68404000	108330000	217050000	98229000	118820000	242990000	108370000	134620000	299380000	154950000	144430000	15526	1813	14727	93858;93859;93860;93861;93862	126812;126813;126814;126815;126816;126817;126818;126819	126819			8	
FGLLNIVMEPFFK	1	Unmodified	1553.8316	0.83160804	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	3	2	1	101.23	96.37	2	5.9672E-20	54986	160513_QHF_FH_JSI10Kac_6	155	119.78			0.8495	0.98539	27.168	7	5	Median	0.79156	0.68911	NaN	1	1	Median	0.8495	0.98539	7.2613	3	2	Median	1.3724	1.3023	35.72	2	2	Median	0.80645	0.8504	NaN	1	0	Median	391640000	186730000	204920000	82808000	46863000	35945000	100070000	50503000	49564000	169980000	69251000	100730000	38790000	20110000	18680000	15527	265	14728	93863;93864;93865;93866;93867;93868;93869	126820;126821;126822;126823;126824;126825;126826;126827	126827			8	
FGLLNIVMEPFFKR	1	Unmodified	1709.9327	0.93271906	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.744	91.024	3	0.0003208	52818	160513_QHF_FH_JSI10Kac_6	81.703	63.107			0.60406	0.71799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60406	0.71799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33521000	19826000	13695000	0	0	0	33521000	19826000	13695000	0	0	0	0	0	0	15528	265	14729	93870	126828	126828			1	
FGLSVGHHLGK	1	Unmodified	1150.6247	0.6247268	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			24						9	10	8	8	7	38.539	35.385	2;3;4	1.6194E-09	30321	160511_QHF_FH_JSI11i_3	133.57	120.95			0.82013	0.85975	46.764	33	7	Median	1.185	0.97721	47.946	10	4	Median	0.77394	0.89081	31.602	8	2	Median	1.0508	1.035	50.767	8	0	Median	0.65852	0.65897	31.471	7	1	Median	6882500000	3225200000	3657200000	1820500000	664260000	1156200000	1379300000	613180000	766160000	1942900000	1005300000	937580000	1739700000	942500000	797240000	15529	1080	14730	93871;93872;93873;93874;93875;93876;93877;93878;93879;93880;93881;93882;93883;93884;93885;93886;93887;93888;93889;93890;93891;93892;93893;93894;93895;93896;93897;93898;93899;93900;93901;93902;93903	126829;126830;126831;126832;126833;126834;126835;126836;126837;126838;126839;126840;126841;126842;126843;126844;126845;126846;126847;126848;126849;126850;126851;126852;126853;126854;126855;126856;126857;126858;126859;126860;126861;126862;126863;126864;126865;126866;126867;126868;126869;126870;126871;126872;126873;126874;126875;126876;126877;126878;126879;126880;126881;126882;126883;126884;126885;126886	126840			57	
FGLTPEQFGENLR	0	Unmodified	1506.7467	0.74669243	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		77.333	76.651	2	0.0020186	67319	160511_QHF_FH_JSI11i_2	70.17	59.647			0.8969	0.97056	6.9021	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8309	1.0191	NaN	1	1	Median	0.96814	0.92433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24131000	11760000	12370000	0	0	0	8979700	4978700	4001000	15151000	6781500	8369400	0	0	0	15530	3212	14731	93904;93905	126887;126888	126887			2	
FGLTTSR	0	Unmodified	780.413	0.41300269	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				27.008	25.98	2	0.013007	22450	160511_QHF_FH_JSI9i_2	68.485	31.456			1.0391	0.88431	NaN	1	0	Median	1.0391	0.88431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82159000	38794000	43365000	82159000	38794000	43365000	0	0	0	0	0	0	0	0	0	15531	1410	14732	93906	126889;126890	126890			2	
FGLYLPLFK	1	Unmodified	1096.6321	0.63210359	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	2	3	98.155	93.953	2	9.4063E-05	84344	160511_QHF_FH_JSI10i_3	94.262	71.77			0.85857	0.94955	19.848	8	3	Median	1.3203	1.1072	NaN	1	0	Median	0.85857	0.99628	7.4629	2	0	Median	1.1262	1.0639	15.413	2	1	Median	0.67185	0.70911	8.2971	3	2	Plateau	1714200000	924780000	789410000	180510000	74649000	105860000	456700000	242840000	213870000	437340000	194030000	243310000	639640000	413270000	226370000	15532	5345	14733	93907;93908;93909;93910;93911;93912;93913;93914;93915	126891;126892;126893;126894;126895;126896;126897;126898;126899;126900;126901;126902	126893			12	
FGLYLPLFKPSVSTSK	2	Unmodified	1782.992	0.99200808	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	2	1	2	95.805	93.213	3	1.4524E-05	82618	160511_QHF_FH_JSI10i_3	107.82	102.77			0.65977	0.73319	26.157	6	6	Median	1.3294	1.0771	NaN	1	1	Median	0.65977	0.76354	21.532	2	2	Median	0.86748	0.81982	NaN	1	1	Median	0.54401	0.5667	0.33382	2	2	Median	1173600000	585650000	587970000	181650000	69164000	112490000	408350000	219980000	188360000	257120000	108270000	148850000	326510000	188230000	138270000	15533	5345	14734	93916;93917;93918;93919;93920;93921	126903;126904;126905;126906;126907;126908;126909;126910;126911	126905			9	
FGLYYSLFEWFHPLFLEDESSSFHK	1	Unmodified	3124.4647	0.4647105	4427	Q9BTY2	FUCA2	Plasma alpha-L-fucosidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.873	93.153	4	2.0062E-130	54589	160513_QHF_FH_JSI10Kac_6	257.86	233.76			0.90293	1.0671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90293	1.0671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202320000	127180000	75147000	0	0	0	202320000	127180000	75147000	0	0	0	0	0	0	15534	4427	14735	93922	126912	126912			1	
FGMFEFLSNHMR	0	Unmodified	1514.6799	0.6798752	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4		3	2	1	87.485	82.32	2;3	7.4493E-11	43884	160513_QHF_FH_JSI10Kac_6	157.68	145.41			0.90285	0.95188	14.403	6	1	Median	NaN	NaN	NaN	0	0	Median	0.74778	0.87793	10.37	3	1	Median	1.0852	1.0058	22.065	2	0	Median	1.0561	1.1244	NaN	1	0	Median	1408500000	842930000	565570000	0	0	0	1268200000	764740000	503480000	98925000	54002000	44923000	41360000	24187000	17173000	15535	1792	14736	93923;93924;93925;93926;93927;93928	126913;126914;126915;126916;126917;126918;126919;126920	126919			6	
FGMFEFLSNHMR	0	Oxidation (M)	1530.6748	0.67478982	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	81.553	72.423	3	0.00010553	38411	160513_QHF_FH_JSI12Kac_6	84.605	78.948			1.0152	0.96699	25.959	3	0	Median	1.541	1.3437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0152	0.96699	NaN	1	0	Median	0.74795	0.80503	NaN	1	0	Median	277670000	136390000	141280000	82179000	33817000	48362000	0	0	0	47916000	20253000	27663000	147570000	82317000	65258000	15536	1792	14736	93929;93930;93931	126921;126922;126923;126924	126924		1470;1471	4	
FGMFEFLSNHMR	0	2 Oxidation (M)	1546.6697	0.66970444	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	2	0		By MS/MS		By matching	16	0									2		1		1	69.959	61.269	3	0.0034448	33561	160513_QHF_FH_JSI10Kac_6	45.507	37.202			0.93622	1.037	19.925	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0244	1.194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8556	0.90076	NaN	1	0	Median	68714000	33144000	35569000	0	0	0	50262000	22657000	27605000	0	0	0	18452000	10487000	7964800	15537	1792	14736	93932;93933	126925	126925		1470;1471	1	
FGMTPSK	1	Unmodified	766.36836	0.36836069	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	2	2	22.004	21.375	2	0.011412	17213	160511_QHF_FH_JSI9i_3	77.741	52.742			1.0287	0.99593	30.498	8	1	Median	0.91696	0.74462	34.014	2	1	Median	0.98308	1.1834	28.994	2	0	Median	1.3823	1.4009	9.3445	2	0	Median	0.92725	0.986	6.014	2	0	Median	3894900000	1999300000	1895700000	773170000	311090000	462080000	967150000	523670000	443480000	1298100000	649860000	648220000	856540000	514640000	341900000	15538	1846	14737	93934;93935;93936;93937;93938;93939;93940;93941	126926;126927;126928;126929;126930	126927			5	
FGMTPSK	1	Oxidation (M)	782.36328	0.36327531	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By matching	2.4	0.49		3	2							1	2	1	1	17.773	17.028	2	0.046826	7964	160511_QHF_FH_JSI9i_3	51.787	35.633			0.74397	0.75651	62.87	5	0	Median	2.0464	1.6735	NaN	1	0	Median	0.67668	0.80397	86.465	2	0	Median	0.74397	0.75651	NaN	1	0	Median	0.42088	0.46681	NaN	1	0	Median	642020000	330480000	311540000	66613000	23845000	42768000	160990000	99513000	61479000	273550000	108170000	165380000	140860000	98948000	41917000	15539	1846	14737	93942;93943;93944;93945;93946	126931;126932	126931			2	
FGNADVVNVLSSHHLIVK	1	Unmodified	1948.053	0.053045209	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	79.25	78.507	3;4	2.9544E-07	66030	160511_QHF_FH_JSI10i_3	99.569	93.909			1.0732	1.1065	37.466	8	3	Median	2.2245	1.8941	35.734	2	1	Median	0.96592	1.158	15.177	2	1	Median	0.99108	0.91673	12.301	2	1	Median	0.88458	0.92167	34.577	2	0	Median	318840000	154230000	164610000	23785000	9974700	13810000	32682000	13413000	19269000	106390000	59288000	47105000	155980000	71553000	84424000	15540	3376	14738	93947;93948;93949;93950;93951;93952;93953;93954	126933;126934;126935;126936;126937;126938;126939;126940;126941;126942	126936			8	
FGNAMLYGYQVGLFK	1	Unmodified	1706.849	0.84904901	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	97.19	96.994	2	7.4425E-07	86215	160511_QHF_FH_JSI11i_3	131.28	96.397			1.148	1.2637	36.618	7	6	Median	1.1258	0.97184	54.81	2	2	Median	0.97096	1.2129	29.339	2	2	Median	0.72808	0.67364	NaN	1	1	Median	1.3022	1.391	13.567	2	1	Median	83711000	42725000	40987000	11549000	5353500	6195900	18610000	9259700	9349800	20228000	11248000	8980400	33325000	16864000	16461000	15541	2118	14739	93955;93956;93957;93958;93959;93960;93961	126943;126944;126945;126946;126947;126948;126949	126943			7	
FGNDGLHEPLDWAQEEGK	1	Unmodified	2040.9177	0.91773352	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			66.469	65.642	3	7.1505E-05	58236	160511_QHF_FH_JSI10i_2	83.776	74.493			0.85692	1.0541	29.005	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85692	1.0541	29.005	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61306000	28240000	33066000	0	0	0	61306000	28240000	33066000	0	0	0	0	0	0	15542	5694	14740	93962;93963	126950;126951	126950			2	
FGNDVQHFK	1	Unmodified	1090.5196	0.51959303	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							1	2	6	3	23.585	22.951	2;3	0.00034418	19296	160511_QHF_FH_JSI11i_3	77.192	60.474			1.0509	1.0438	48.326	8	5	Median	1.0278	0.87028	NaN	1	0	Median	1.2858	1.5632	NaN	1	1	Median	1.0744	1.0958	27.914	3	2	Median	0.98374	0.99418	78.118	3	2	Median	719370000	306070000	413290000	54508000	23377000	31131000	25174000	13741000	11433000	407640000	154980000	252660000	232050000	113970000	118070000	15543	2043	14741	93964;93965;93966;93967;93968;93969;93970;93971;93972;93973;93974;93975	126952;126953;126954;126955;126956;126957;126958;126959;126960;126961;126962;126963;126964	126952			13	
FGNEVIPVTVTVK	1	Unmodified	1401.7868	0.78676633	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	3.32	4	6	4					1		4	3	4	4	72.751	71.314	2;3	8.2698E-07	63024	160511_QHF_FH_JSI9i_2	130.01	107.92			0.92194	0.9601	20.296	14	2	Median	1.379	1.1569	9.4067	3	1	Plateau	0.93222	1.1456	17.805	3	0	Plateau	1.0091	1.0128	10.354	4	0	Median	0.75513	0.72118	12.702	4	1	Linear	1932100000	997510000	934600000	335060000	146250000	188810000	505410000	271680000	233730000	517140000	249350000	267800000	574500000	330230000	244270000	15544	1249	14742	93976;93977;93978;93979;93980;93981;93982;93983;93984;93985;93986;93987;93988;93989;93990	126965;126966;126967;126968;126969;126970;126971;126972;126973;126974;126975;126976;126977;126978;126979;126980;126981;126982;126983;126984;126985;126986;126987;126988	126978			24	
FGNPGER	0	Unmodified	775.3613	0.36130147	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	9.2688	8.9148	2	0.025021	6563	160511_QHF_FH_JSI12i_2	54.787	30.814			1.0753	1.1398	11.31	5	0	Median	1.3362	1.1398	NaN	1	0	Median	0.93479	1.1522	NaN	1	0	Median	1.2696	1.2748	NaN	1	0	Median	0.95436	1.0071	10.482	2	0	Median	906350000	428720000	477630000	156170000	68542000	87627000	221480000	107210000	114270000	245560000	97284000	148280000	283140000	155680000	127460000	15545	3893	14743	93991;93992;93993;93994;93995	126989	126989			1	
FGNPLLVQDVESYDPVLNPVLNR	0	Unmodified	2597.349	0.34895246	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			101.76	101.71	3	3.8563E-08	90250	160511_QHF_FH_JSI10i_2	76.417	73.494			0.71175	0.86538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71175	0.86538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251720000	134450000	117280000	0	0	0	251720000	134450000	117280000	0	0	0	0	0	0	15546	2517	14744	93996	126990	126990			1	
FGNQADHFLGSLAFAK	1	Unmodified	1721.8526	0.85255449	4711	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							4	3	2	2	78.818	78.071	2;3	1.7188E-10	67577	160511_QHF_FH_JSI12i_3	174.65	156.39			1.0108	1.1342	31.82	10	1	Median	1.6382	1.3696	17.609	3	1	Plateau	1.0019	1.1531	24.982	3	0	Median	1.0325	0.97098	19.634	2	0	Median	0.76172	0.77374	2.4495	2	0	Median	1191500000	616080000	575450000	144070000	63953000	80116000	194110000	105600000	88512000	365940000	163510000	202430000	487400000	283010000	204390000	15547	4711	14745	93997;93998;93999;94000;94001;94002;94003;94004;94005;94006;94007	126991;126992;126993;126994;126995;126996;126997;126998;126999;127000;127001;127002;127003;127004;127005;127006;127007;127008;127009	127008			19	
FGNTEQGFK	1	Unmodified	1026.4771	0.47705951	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	23.727	22.859	2	2.2076E-05	19485	160511_QHF_FH_JSI9i_2	106.04	77.53			0.93088	0.94842	17.53	4	0	Median	1.3088	1.0915	NaN	1	0	Median	0.66808	0.82411	NaN	1	0	Median	1.1381	1.1356	NaN	1	0	Median	0.76138	0.82159	NaN	1	0	Median	372520000	166910000	205610000	63677000	22514000	41163000	81889000	41426000	40463000	144090000	56480000	87606000	82868000	46488000	36379000	15548	1685	14746	94008;94009;94010;94011	127010;127011;127012;127013;127014;127015	127011			6	
FGNTIVHGVLINGLISALLGTK	1	Unmodified	2236.2943	0.29433811	2135	P86397	RPP14	Hydroxyacyl-thioester dehydratase type 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.093	90.666	3	4.2576E-17	53843	160513_QHF_FH_JSI10Kac_6	128.17	120.18			0.95729	0.95791	3.5655	2	1	Median	1.1631	0.98237	NaN	1	1	Median	0.78788	0.93406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	346010000	155000000	191010000	126520000	60600000	65916000	219490000	94398000	125100000	0	0	0	0	0	0	15549	2135	14747	94012;94013	127016;127017	127017			2	
FGPALSVK	1	Unmodified	817.46979	0.46978929	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	46.09	45.23	2	0.0052958	39672	160511_QHF_FH_JSI11i_3	66.073	7.1558			1.752	1.762	16.331	9	7	Median	1.9371	1.6064	13.075	2	2	Median	1.4203	1.6954	5.642	2	2	Median	1.7962	1.6611	22.48	3	2	Plateau	1.5228	1.6083	14.209	2	1	Median	5959700000	2101600000	3858000000	1011000000	330280000	680710000	1206300000	451310000	755010000	2053200000	681590000	1371600000	1689200000	638460000	1050700000	15550	1009;4688	14748	94014;94015;94016;94017;94018;94019;94020;94021;94022	127018;127019;127020;127021;127022;127023;127024;127025;127026;127027	127019			10	
FGPIPLGSLGWK	1	Unmodified	1270.7074	0.7073938	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	3	3	96.749	94.762	2	3.7316E-05	87243	160511_QHF_FH_JSI11i_3	104.05	84.261			0.93019	0.94823	17.435	10	0	Median	1.198	0.97822	10.049	2	0	Median	0.7959	0.92285	11.813	2	0	Median	0.99511	0.95226	6.5473	3	0	Plateau	0.64003	0.72353	21.392	3	0	Median	1148000000	590620000	557420000	257970000	100690000	157280000	158570000	84109000	74459000	299610000	155480000	144130000	431900000	250350000	181550000	15551	2767	14749	94023;94024;94025;94026;94027;94028;94029;94030;94031;94032	127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039;127040;127041;127042;127043;127044	127028			17	
FGPLASVK	1	Unmodified	817.46979	0.46978929	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	45.14	44.289	2	0.020585	37237	160511_QHF_FH_JSI10i_3	45.68	6.7176			1.1719	1.0395	16.389	4	0	Median	1.2965	1.0274	NaN	1	0	Median	0.80584	0.95056	NaN	1	0	Median	1.4621	1.3842	NaN	1	0	Median	1.0593	1.0518	NaN	1	0	Median	319420000	160720000	158700000	30592000	13117000	17476000	54277000	26275000	28002000	108970000	55792000	53176000	125580000	65534000	60044000	15552	238	14750	94033;94034;94035;94036	127045	127045			1	
FGPLIVDWPHK	1	Unmodified	1307.7026	0.70264277	2782	Q17RY0	CPEB4	Cytoplasmic polyadenylation element-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.623	79.897	3	0.00053889	69094	160511_QHF_FH_JSI12i_3	57.348	51.315			0.34615	0.60879	28.117	4	1	Linear	1.1955	1.0128	NaN	1	0	Median	0.56046	0.64986	NaN	1	0	Median	0.6043	0.57032	NaN	1	1	Median	0.53904	0.54899	NaN	1	0	Median	83567000	51750000	31817000	10279000	4875400	5404100	12621000	7434800	5185900	27212000	16533000	10679000	33454000	22907000	10548000	15553	2782	14751	94037;94038;94039;94040	127046;127047;127048;127049	127049			4	
FGPLTPELMVPR	0	Unmodified	1355.7271	0.72714296	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	87.961	87.464	2	4.2815E-05	75573	160511_QHF_FH_JSI12i_2	101.66	90.301			0.8708	0.9735	14.791	5	0	Median	1.4033	1.2164	NaN	1	0	Median	0.77966	0.9735	NaN	1	0	Median	0.94342	0.91886	15.921	2	0	Median	0.8047	0.90067	NaN	1	0	Median	496030000	257170000	238860000	106290000	43919000	62373000	108060000	62550000	45512000	196820000	100660000	96165000	84858000	50047000	34811000	15554	1505	14752	94041;94042;94043;94044;94045	127050;127051;127052;127053;127054;127055;127056;127057;127058	127051			9	
FGPYESYDSR	0	Unmodified	1219.5146	0.51456723	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	38.159	37.377	2	0.0013717	31792	160511_QHF_FH_JSI12i_2	66.27	59.602			1.0388	0.9548	11.892	4	0	Median	0.99852	0.87776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0862	1.072	4.4798	2	0	Median	0.79657	0.87584	NaN	1	0	Median	198260000	103810000	94454000	32398000	16944000	15453000	0	0	0	120150000	59926000	60221000	45714000	26935000	18780000	15555	2880	14753	94046;94047;94048;94049	127059;127060	127059			2	
FGPYYTEPVIAGLDPK	1	Unmodified	1765.8927	0.89268797	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.555	87.998	2	0.0062927	77370	160511_QHF_FH_JSI11i_2	59.542	43.288			0.15749	0.15316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15749	0.15316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8840800	7865500	975350	0	0	0	0	0	0	8840800	7865500	975350	0	0	0	15556	1672	14754	94050	127061	127061			1	
FGQAATMEGIGAIGGTPPAFNR	0	Oxidation (M)	2178.0528	0.052787212	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	71.035	70.47	2;3	2.1732E-09	61275	160511_QHF_FH_JSI12i_3	92.034	83.242			1.3031	1.3017	14.761	6	1	Median	1.6101	1.3974	NaN	1	0	Median	1.1249	1.3175	18.403	2	0	Median	1.4996	1.4249	22.82	2	1	Median	1.1652	1.1948	NaN	1	0	Median	275890000	120570000	155320000	42560000	15030000	27530000	63318000	26566000	36752000	94877000	41549000	53328000	75134000	37424000	37710000	15557	2644	14755	94051;94052;94053;94054;94055;94056;94057	127062;127063;127064;127065;127066	127066		2063	4	
FGQAATMEGIGAIGGTPPAFNR	0	Unmodified	2162.0579	0.05787259	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.666	2	8	7							3	4	5	5	81.294	80.614	2;3	7.4511E-74	70005	160511_QHF_FH_JSI12i_3	300	286.86			1.2793	1.3184	29.297	17	1	Median	1.6691	1.4207	13.469	3	1	Median	0.96809	1.2189	17.078	4	0	Linear	1.4729	1.447	11.776	5	0	Median	0.78449	0.82008	3.7707	5	0	Median	3404100000	1416900000	1987200000	664530000	233570000	430960000	565290000	264530000	300760000	1512400000	556810000	955580000	661870000	361970000	299910000	15558	2644	14755	94058;94059;94060;94061;94062;94063;94064;94065;94066;94067;94068;94069;94070;94071;94072;94073;94074	127067;127068;127069;127070;127071;127072;127073;127074;127075;127076;127077;127078;127079;127080;127081;127082;127083;127084;127085;127086;127087;127088;127089;127090;127091;127092;127093;127094;127095;127096;127097;127098	127098			32	
FGQDLFSK	1	Unmodified	940.46543	0.46543219	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.234	13.316	3	0.060801	10293	160511_QHF_FH_JSI12i_3	21.448	10.575			6.6574	6.7794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.6574	6.7794	NaN	1	1	Median	100910000	15526000	85382000	0	0	0	0	0	0	0	0	0	100910000	15526000	85382000	15559	1631	14756	94075	127099	127099			1	
FGQGDLPKPINSDFR	1	Unmodified	1689.8475	0.84746911	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	59.852	59.188	2;3	0.00075599	49407	160511_QHF_FH_JSI10i_3	51.695	44.465			0.48544	1.1949	56.915	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.66302	0.81594	67.22	2	0	Median	2.0877	1.9733	NaN	1	0	Median	1.0859	1.0879	NaN	1	1	Median	259060000	131840000	127220000	0	0	0	189720000	101610000	88118000	23220000	7549900	15670000	46116000	22685000	23431000	15560	1685	14757	94076;94077;94078;94079	127100;127101;127102;127103;127104;127105;127106	127102			7	
FGQGGAGPVGGQGPR	0	Unmodified	1340.6585	0.65854613	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.4	3	4	5					2	4	4	5	5	4	27.44	23.95	2;3	5.3808E-30	20714	160511_QHF_FH_JSI11i_3	192.38	174.56			1.1578	1.1469	25.261	18	0	Median	1.5229	1.287	19.811	4	0	Median	0.89841	1.0966	19.351	5	0	Median	1.3709	1.3372	19.446	5	0	Median	0.89947	0.95029	18.264	4	0	Median	2916400000	1302500000	1614000000	628850000	220020000	408830000	930110000	463510000	466610000	827630000	345340000	482290000	529840000	273620000	256230000	15561	1222	14758	94080;94081;94082;94083;94084;94085;94086;94087;94088;94089;94090;94091;94092;94093;94094;94095;94096;94097	127107;127108;127109;127110;127111;127112;127113;127114;127115;127116;127117;127118;127119;127120;127121;127122;127123;127124;127125;127126;127127;127128;127129	127108			23	
FGQLGLNDENDRYVPNLLK	1	Unmodified	2204.1226	0.12258134	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				82.787	81.474	3	0.0036778	67059	160511_QHF_FH_JSI9i_3	43.208	34.151			0.36573	0.29756	NaN	1	0	Median	0.36573	0.29756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80468000	59456000	21012000	80468000	59456000	21012000	0	0	0	0	0	0	0	0	0	15562	2884	14759	94098	127130	127130			0	
FGQLTYVR	0	Unmodified	982.52362	0.52361577	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		43.601	42.834	2	0.011461	36826	160511_QHF_FH_JSI11i_2	54.157	28.42			1.4114	1.3055	22.269	2	0	Median	1.8014	1.5281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1058	1.1153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203960000	89808000	114160000	70752000	28115000	42637000	0	0	0	133210000	61693000	71520000	0	0	0	15563	4221	14760	94099;94100	127131;127132;127133	127133			3	
FGQMLGSNMTEFHSQISK	1	Oxidation (M)	2056.9346	0.93464591	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		55.337	54.561	3	5.9537E-09	46093	160511_QHF_FH_JSI10i_3	133.16	116.86			1.0665	0.99043	20.604	4	1	Median	1.8356	1.4934	NaN	1	0	Median	0.873	0.9866	NaN	1	0	Median	1.0665	0.99033	0.56365	2	1	Median	NaN	NaN	NaN	0	0	Median	288010000	145190000	142830000	56785000	23256000	33529000	101100000	64053000	37043000	130130000	57877000	72254000	0	0	0	15564	2517	14761	94101;94102;94103;94104;94105	127134;127135;127136;127137;127138	127136		1986;1987	5	
FGQMLGSNMTEFHSQISK	1	2 Oxidation (M)	2072.9296	0.92956053	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	0	By MS/MS				3	0			1							1				45.01	43.41	3	0.00047306	35433	160511_QHF_FH_JSI9i_3	54.368	39.446			1.635	1.3297	NaN	1	0	Median	1.635	1.3297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26927000	13722000	13205000	26927000	13722000	13205000	0	0	0	0	0	0	0	0	0	15565	2517	14761	94106	127139	127139		1986;1987	1	
FGQMLGSNMTEFHSQISK	1	Unmodified	2040.9397	0.93973129	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		64.85	63.898	2;3	7.6616E-08	56639	160511_QHF_FH_JSI10i_2	122.49	116.85			0.92726	1.0476	22.022	3	1	Plateau	1.0765	0.94574	NaN	1	0	Median	0.92726	1.1163	NaN	1	0	Median	0.67745	0.72161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	268000000	124720000	143280000	109570000	46106000	63463000	119730000	56934000	62792000	38706000	21684000	17023000	0	0	0	15566	2517	14761	94107;94108;94109;94110	127140;127141;127142;127143;127144;127145	127145			6	
FGQQNPR	0	Unmodified	845.4144	0.41439968	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		7.3108	7.3108	2	0.0097704	5059	160511_QHF_FH_JSI11i_3	67.741	39.634			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15567	3754	14762	94111	127146	127146			1	
FGQVPDQPAGLR	0	Unmodified	1283.6622	0.66223452	4865	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		46.96	46.116	2	0.057954	39772	160511_QHF_FH_JSI11i_2	34.721	18.518			1.2118	1.4817	19.547	3	0	Median	1.8127	1.5818	NaN	1	0	Median	1.2118	1.4817	NaN	1	0	Median	1.1183	1.0965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136410000	62288000	74122000	42164000	13917000	28246000	38978000	18568000	20410000	55269000	29803000	25465000	0	0	0	15568	4865	14763	94112;94113;94114	127147	127147			1	
FGQVYTEAK	1	Unmodified	1041.5131	0.51311067	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.57	4.69	2	4						1		2		3	2	29.023	25.899	2	0.00012068	21958	160511_QHF_FH_JSI12i_2	109.71	87.583			0.59571	0.54671	60.189	4	4	Median	0.49752	0.42253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53961	0.54183	37.703	2	2	Median	1.3288	1.4946	NaN	1	1	Median	988930000	586600000	402330000	246890000	184420000	62472000	0	0	0	457020000	306550000	150470000	285020000	95636000	189380000	15569	1602	14764	94115;94116;94117;94118;94119;94120;94121	127148;127149;127150;127151;127152;127153;127154	127149			7	
FGQYAGHVVPTILEK	1	Unmodified	1657.8828	0.88279198	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	64.875	64.73	2;3	1.2175E-06	57506	160511_QHF_FH_JSI11i_3	144.47	129.79			0.89383	0.84992	30.49	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89383	0.84992	NaN	1	0	Median	0.95242	0.974	41.659	2	1	Median	426730000	232640000	194090000	0	0	0	0	0	0	251660000	138140000	113520000	175070000	94498000	80574000	15570	2485	14765	94122;94123;94124;94125	127155;127156;127157;127158;127159;127160	127157			6	
FGRVDVAVNCAGIAVASK	1	Unmodified	1832.9567	0.95670198	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			62.604	61.087	3	0.0014958	51127	160511_QHF_FH_JSI10i_3	55.763	44.947			0.85942	1.0084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85942	1.0084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15058000	9906800	5151000	0	0	0	15058000	9906800	5151000	0	0	0	0	0	0	15571	4304	14766	94126	127161	127161			1	
FGSAIPIPSLPDK	1	Unmodified	1340.734	0.73400248	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		83.393	72.866	2	0.032663	38535	160513_QHF_FH_JSI11Kac_5	42.001	31.477			0.84842	0.81576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84842	0.81576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1572400	781870	790540	0	0	0	0	0	0	1572400	781870	790540	0	0	0	15572	5685	14767	94127	127162	127162			1	
FGSALVPTGNLQLR	0	Unmodified	1471.8147	0.81471242	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	74.743	73.957	2	0.00010303	64213	160511_QHF_FH_JSI12i_3	108.7	83.842			0.88511	1.0251	27.976	5	2	Median	1.7669	1.464	NaN	1	1	Median	0.71214	0.84799	26.823	2	1	Median	1.2454	1.1973	NaN	1	0	Median	0.87487	0.89632	NaN	1	0	Median	238490000	121730000	116760000	22563000	7932700	14630000	87544000	47012000	40531000	61988000	28916000	33072000	66400000	37873000	28527000	15573	4522	14768	94128;94129;94130;94131;94132	127163;127164;127165;127166;127167;127168;127169;127170	127170			8	
FGSEFSPELQASFQK	1	Unmodified	1700.8046	0.80460124	72	CON__Q3SX09			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	72.751	71.978	2	5.9646E-40	63999	160511_QHF_FH_JSI10i_2	203.51	173.98		+	0.73074	0.71467	21.462	5	1	Median	0.83838	0.71467	NaN	1	0	Median	0.49096	0.59258	NaN	1	0	Median	0.81864	0.80606	33.493	2	0	Median	0.73074	0.80398	NaN	1	1	Median	306310000	175630000	130680000	55315000	29189000	26126000	63013000	36866000	26147000	127950000	71894000	56057000	60036000	37683000	22352000	15574	72	14769	94133;94134;94135;94136;94137	127171;127172;127173;127174;127175;127176;127177;127178	127178			8	
FGSFTYATTEK	1	Unmodified	1250.5819	0.58191851	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		47.844	47.107	2	0.0116	40548	160511_QHF_FH_JSI11i_2	45.908	32.871			0.81893	0.90786	9.4731	2	1	Median	NaN	NaN	NaN	0	0	Median	0.68368	0.84904	NaN	1	1	Median	0.98094	0.97076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68212000	39783000	28428000	0	0	0	24189000	16692000	7497200	44023000	23092000	20931000	0	0	0	15575	5353	14770	94138;94139	127179;127180	127179			2	
FGSGMNMGR	0	Unmodified	955.40041	0.40040587	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	3	2	26.22	25.424	2	1.2698E-05	21130	160511_QHF_FH_JSI12i_3	110.31	100.17			0.93757	0.99776	57.824	9	2	Median	1.4224	1.1542	55.141	2	0	Median	0.87402	0.99776	83.05	3	1	Median	1.1285	1.1017	37.328	2	1	Median	0.62162	0.66721	62.861	2	0	Median	3551700000	1955600000	1596100000	1065700000	463430000	602260000	1161400000	690950000	470470000	775310000	441460000	333840000	549290000	359760000	189540000	15576	1765	14771	94140;94141;94142;94143;94144;94145;94146;94147;94148;94149	127181;127182;127183;127184;127185;127186;127187;127188;127189	127189			9	
FGSLLPIHPVTSG	0	Unmodified	1323.7187	0.71868677	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	78.396	77.576	2	5.9071E-07	68425	160511_QHF_FH_JSI9i_2	93.111	64.937			0.64595	0.69846	18.653	4	1	Median	1.133	0.9439	NaN	1	1	Median	0.52126	0.6288	NaN	1	0	Median	0.72272	0.75534	NaN	1	0	Median	0.57734	0.64586	NaN	1	0	Median	220850000	144870000	75985000	25312000	15551000	9761400	53386000	35410000	17976000	77968000	49847000	28121000	64185000	44058000	20127000	15577	2645	14772	94150;94151;94152;94153;94154	127190;127191;127192;127193;127194;127195;127196	127192			7	
FGSTADALVSDDETTR	0	Unmodified	1683.7588	0.75877326	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	47.336	46.656	2	2.0374E-07	41562	160511_QHF_FH_JSI9i_1	96.464	82.045			0.96654	1.0381	16.09	4	1	Median	1.5069	1.222	NaN	1	1	Median	0.89678	1.0852	NaN	1	0	Median	1.0417	0.99302	NaN	1	0	Median	0.81484	0.83405	NaN	1	0	Median	259710000	138730000	120990000	48809000	20295000	28514000	80334000	52759000	27575000	72540000	32789000	39751000	58031000	32883000	25148000	15578	2899	14773	94155;94156;94157;94158;94159	127197;127198;127199;127200;127201;127202;127203	127203			7	
FGSVFPSLNMAVK	1	Unmodified	1395.7221	0.72205759	4933	Q9NQY0	BIN3	Bridging integrator 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.523	86.371	2	0.00069656	75012	160511_QHF_FH_JSI12i_3	67.334	49.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15579	4933	14774	94160	127204	127204			1	
FGSVPHGGFGMGFER	0	Unmodified	1580.7194	0.71943182	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			61.803	60.286	3	0.0073625	49421	160511_QHF_FH_JSI9i_3	40.242	38.924			1.0252	0.98775	4.7683	2	0	Median	1.2612	1.0216	NaN	1	0	Median	0.83334	0.955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91673000	50229000	41444000	44398000	20450000	23948000	47275000	29779000	17496000	0	0	0	0	0	0	15580	4121	14775	94161;94162	127205;127206	127206			1	
FGTAIAAVK	1	Unmodified	876.5069	0.50690308	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		38.413	38.413	2	0.021719	33728	160511_QHF_FH_JSI11i_3	49.85	34.218			0.55151	0.5203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55151	0.5203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75728000	48043000	27685000	0	0	0	0	0	0	75728000	48043000	27685000	0	0	0	15581	1873	14776	94163	127207	127207			1	
FGTEELFK	1	Unmodified	969.48075	0.48074791	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.208	57.275	2	0.0076682	49017	160511_QHF_FH_JSI12i_2	58.815	30.303			0.97467	1.0846	15.344	4	0	Median	1.4744	1.2452	NaN	1	0	Median	0.87815	1.0479	NaN	1	0	Median	1.0818	1.1225	NaN	1	0	Median	0.76427	0.86507	NaN	1	0	Median	309410000	158750000	150660000	61252000	25167000	36085000	64238000	31866000	32372000	91853000	48756000	43097000	92063000	52958000	39106000	15582	2578;2318	14777	94164;94165;94166;94167	127208;127209;127210	127208			3	
FGTEWAQNTIVPK	1	Unmodified	1489.7565	0.75652884	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	67.643	66.678	2	6.9115E-06	58135	160511_QHF_FH_JSI11i_2	128.57	117.82			0.86933	0.77891	35.117	6	5	Median	0.86933	0.75443	15.165	2	2	Median	0.38683	0.47234	NaN	1	0	Median	1.2236	1.2478	NaN	1	1	Median	0.78574	0.89125	29.702	2	2	Median	271160000	148000000	123160000	58011000	29402000	28609000	51423000	32858000	18565000	58937000	27544000	31393000	102790000	58198000	44594000	15583	1346	14778	94168;94169;94170;94171;94172;94173	127211;127212;127213;127214;127215;127216;127217;127218	127215			8	
FGTFGGLGSK	1	Unmodified	969.49198	0.4919813	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	49.457	48.608	2	0.00017227	39620	160511_QHF_FH_JSI9i_3	82.749	65.364			0.86817	0.88984	21.537	7	0	Median	1.4539	1.2119	23.294	2	0	Median	0.74774	0.87452	2.4561	2	0	Median	1.0747	1.0645	28.054	2	0	Median	0.84761	0.84614	NaN	1	0	Median	2558100000	1273200000	1284900000	495530000	184070000	311460000	551470000	292310000	259160000	650830000	314710000	336120000	860300000	482160000	378140000	15584	2286	14779	94174;94175;94176;94177;94178;94179;94180	127219;127220;127221;127222;127223;127224;127225;127226;127227;127228;127229;127230;127231;127232	127224			14	
FGTINIVHPK	1	Unmodified	1124.6342	0.63422886	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							3	2	2	1	45.086	44.082	2;3	1.8904E-05	38509	160511_QHF_FH_JSI11i_3	87.298	79.078			0.93418	0.89176	16.293	7	1	Median	1.4578	1.2064	22.587	3	1	Plateau	0.70223	0.84545	7.322	2	0	Median	1.1012	1.0706	NaN	1	0	Median	0.8801	0.89176	NaN	1	0	Median	2124300000	978710000	1145600000	449100000	175230000	273870000	349680000	203120000	146560000	582030000	232500000	349530000	743450000	367850000	375610000	15585	5697	14780	94181;94182;94183;94184;94185;94186;94187;94188	127233;127234;127235;127236;127237;127238;127239;127240;127241;127242;127243;127244	127233			12	
FGTINIVHPKLGSYTK	2	Acetyl (K)	1815.9883	0.98831969	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	76.22	66.837	3	0.033226	36442	160513_QHF_FH_JSI11Kac_6	30.684	20.049			0.58672	0.59408	40.344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47187	0.44663	NaN	1	0	Median	0.72953	0.7902	NaN	1	0	Median	91745000	55213000	36531000	0	0	0	0	0	0	64400000	41174000	23226000	27345000	14039000	13306000	15586	5697	14781	94189;94190	127245	127245			1	
FGTKLGSDIK	2	Acetyl (K)	1106.5972	0.59717465	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	56.275	45.581	2	5.6274E-06	23183	160513_QHF_FH_JSI10Kac_5	117.7	74.452			0.82574	0.90731	13.577	7	0	Median	1.3234	1.1287	NaN	1	0	Median	0.73509	0.88121	6.1551	2	0	Median	0.96488	0.94539	12.743	2	0	Median	0.75385	0.82292	13.806	2	0	Median	268800000	152600000	116190000	23061000	10072000	12989000	94426000	52441000	41986000	84661000	48330000	36330000	66648000	41761000	24888000	15587	1545	14782	94191;94192;94193;94194;94195;94196;94197	127246;127247;127248;127249;127250;127251;127252;127253;127254;127255;127256;127257	127257	1561		12	
FGTLLSGSWDTTAK	1	Unmodified	1482.7355	0.73545904	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	73.731	73.152	2	1.3319E-09	65159	160511_QHF_FH_JSI11i_3	143	107.04			0.67334	0.71454	50.487	4	3	Median	NaN	NaN	NaN	0	0	Median	0.52498	0.62979	NaN	1	1	Median	0.86363	0.8107	NaN	1	0	Median	0.62467	0.66066	85.244	2	2	Median	541180000	314690000	226490000	0	0	0	149880000	96810000	53068000	142290000	72379000	69910000	249010000	145500000	103510000	15588	5495	14783	94198;94199;94200;94201	127258;127259;127260;127261;127262;127263;127264	127259			7	
FGTSETSK	1	Unmodified	855.39741	0.39741221	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	9.1345	8.6806	2	0.015892	6398	160511_QHF_FH_JSI11i_2	50.04	26.068			0.88825	0.98683	44.626	6	1	Median	1.213	0.99961	85.93	2	1	Median	0.79053	0.96458	NaN	1	0	Median	1.1121	1.1019	12.374	2	0	Median	0.55197	0.61246	NaN	1	0	Median	908730000	426780000	481950000	272560000	102410000	170150000	90012000	44042000	45970000	446370000	217240000	229130000	99789000	63094000	36694000	15589	1685	14784	94202;94203;94204;94205;94206;94207	127265;127266;127267;127268;127269	127268			5	
FGTTAVPTYQVGR	0	Unmodified	1395.7147	0.71466402	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	51.547	50.857	2	6.7557E-05	43628	160511_QHF_FH_JSI12i_3	104.22	93.07			1.1955	1.2668	36.518	6	2	Median	1.5167	1.3011	NaN	1	0	Median	1.0684	1.3179	NaN	1	0	Median	0.96534	0.94283	37.992	2	1	Median	0.88226	0.93521	61.225	2	1	Median	410970000	206500000	204470000	80188000	30801000	49387000	89192000	45577000	43614000	143820000	70925000	72895000	97771000	59196000	38574000	15590	4202	14785	94208;94209;94210;94211;94212;94213	127270;127271;127272;127273;127274;127275;127276	127275			5	
FGTTVPFTSR	0	Unmodified	1111.5662	0.56620887	5168	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.382	51.147	2	0.005827	43769	160511_QHF_FH_JSI12i_3	53.493	43.079			0.86267	0.83024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86267	0.83024	NaN	1	0	Median	44560000	23078000	21483000	0	0	0	0	0	0	0	0	0	44560000	23078000	21483000	15591	5168	14786	94214	127277	127277			1	
FGTVLTEHVAAAELGAR	0	Unmodified	1740.9159	0.91588303	345	O43598	DNPH1	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.94	4.29		9	7						2	4	5	5	4	66.263	64.653	2;3	4.0546E-183	55840	160511_QHF_FH_JSI12i_3	309.93	277.43			0.89131	0.92392	21.18	17	3	Median	1.2301	1.0447	7.2954	3	0	Plateau	0.89131	1.0948	10.572	5	0	Median	0.92993	0.87477	16.263	5	2	Median	0.68581	0.71052	7.597	4	1	Median	4719600000	2597700000	2121900000	439220000	135010000	304200000	1179800000	675350000	504410000	1637500000	898420000	739060000	1463100000	888880000	574270000	15592	345	14787	94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230;94231;94232	127278;127279;127280;127281;127282;127283;127284;127285;127286;127287;127288;127289;127290;127291;127292;127293;127294;127295;127296;127297;127298;127299;127300;127301;127302;127303;127304;127305;127306;127307;127308;127309;127310;127311	127309			34	
FGVAPDHPEVK	1	Unmodified	1194.6033	0.60332266	1211	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.496	31.107	3	0.039166	26319	160511_QHF_FH_JSI11i_2	29.245	20.94			0.82456	0.84043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82456	0.84043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62053000	33757000	28296000	0	0	0	0	0	0	62053000	33757000	28296000	0	0	0	15593	1211	14788	94233	127312	127312			1	
FGVEQDRMDK	1	Unmodified	1223.5605	0.56047157	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.184	23.166	3	0.034555	19012	160511_QHF_FH_JSI12i_3	34.501	25.988			1.5284	1.5695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5284	1.5695	NaN	1	1	Median	269990000	73145000	196840000	0	0	0	0	0	0	0	0	0	269990000	73145000	196840000	15594	2522	14789	94234	127313	127313			1	
FGVEQDVDMVFASFIR	0	Unmodified	1858.8924	0.89237039	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.34		12	7	4	1				13	6	8	15	8	101.08	97.167	2;3	3.7572E-182	50749	160513_QHF_FH_JSI11Kac_6	372.73	339.73			0.79252	0.96557	32.775	33	10	Median	1.4302	1.2155	9.0947	6	3	Median	0.77907	0.92623	22.074	7	0	Median	1.0368	1.0174	40.242	14	5	Median	0.67654	0.72631	13.444	6	2	Median	18417000000	9004700000	9412300000	3470800000	1362900000	2107900000	3644100000	2039300000	1604800000	8705400000	4182900000	4522400000	2596800000	1419600000	1177200000	15595	1055	14790	94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245;94246;94247;94248;94249;94250;94251;94252;94253;94254;94255;94256;94257;94258;94259;94260;94261;94262;94263;94264;94265;94266;94267;94268;94269;94270;94271	127314;127315;127316;127317;127318;127319;127320;127321;127322;127323;127324;127325;127326;127327;127328;127329;127330;127331;127332;127333;127334;127335;127336;127337;127338;127339;127340;127341;127342;127343;127344;127345;127346;127347;127348;127349;127350;127351;127352;127353;127354;127355;127356;127357;127358;127359;127360;127361;127362	127323			49	
FGVEQDVDMVFASFIR	0	Oxidation (M)	1874.8873	0.88728501	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	10.7	5.6		1	1	2					3		3	3	1	98.469	92.339	2;3	3.6147E-23	47843	160513_QHF_FH_JSI12Kac_6	203.85	190.65			2.0274	1.9043	72.963	7	7	Median	NaN	NaN	NaN	0	0	Median	3.0017	3.5672	35	3	3	Median	1.3121	1.2341	56.952	3	3	Plateau	1.4691	1.5421	NaN	1	1	Median	1866500000	741820000	1124700000	0	0	0	422420000	118480000	303950000	440640000	165330000	275310000	1003500000	458020000	545440000	15596	1055	14790	94272;94273;94274;94275;94276;94277;94278	127363;127364;127365;127366;127367;127368;127369	127368		678	7	
FGVEQDVDMVFASFIRK	1	Oxidation (M)	2002.9822	0.98224803	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	3	3	3	5	95.978	89.823	2;3	2.0362E-31	45991	160513_QHF_FH_JSI12Kac_6	168.5	151.58			0.99635	1.0795	29.314	14	4	Median	1.4576	1.2358	20.539	3	0	Plateau	0.93982	1.1075	11.671	3	1	Median	1.1045	1.0589	19.77	3	1	Plateau	0.80428	0.86114	24.529	5	2	Median	8148900000	3883800000	4265100000	2004700000	803990000	1200700000	1386300000	630130000	756210000	1481100000	649810000	831310000	3276700000	1799900000	1476900000	15597	1055	14791	94279;94280;94281;94282;94283;94284;94285;94286;94287;94288;94289;94290;94291;94292	127370;127371;127372;127373;127374;127375;127376;127377;127378;127379;127380;127381;127382;127383	127379		678	14	
FGVEQDVDMVFASFIRK	1	Unmodified	1986.9873	0.98733341	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.72		5	7						12	5	8	5	6	99.362	95.248	2;3	1.0125E-127	47201	160513_QHF_FH_JSI12Kac_6	295.01	270.72			1.0086	1.1193	27.729	24	6	Median	1.6545	1.4211	25.901	5	0	Median	0.94782	1.1038	19.776	8	2	Median	1.2607	1.2612	8.8996	5	1	Median	0.70881	0.73138	20.003	6	3	Median	43754000000	21284000000	22470000000	5854000000	2048500000	3805500000	10945000000	5857700000	5087600000	10063000000	4047300000	6015900000	16892000000	9330300000	7561300000	15598	1055	14791	94293;94294;94295;94296;94297;94298;94299;94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316	127384;127385;127386;127387;127388;127389;127390;127391;127392;127393;127394;127395;127396;127397;127398;127399;127400;127401;127402;127403;127404;127405;127406;127407;127408;127409;127410;127411;127412;127413;127414;127415;127416;127417;127418;127419	127409			36	
FGVEQPEGDEDLTK	1	Unmodified	1562.71	0.71003215	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			48.604	47.781	2	1.5928E-05	42924	160511_QHF_FH_JSI10i_1	84.507	64.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15599	1251	14792	94317;94318	127420;127421	127420			2	
FGVGMAILSLLLK	1	Unmodified	1360.8152	0.81522969	3138	Q6RW13	AGTRAP	Type-1 angiotensin II receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			101.05	93.607	2	6.6392E-15	53189	160513_QHF_FH_JSI9Kac_6	137.46	122.79			0.71166	0.85482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71166	0.85482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48674000	26256000	22418000	7157600	0	7157600	41516000	26256000	15260000	0	0	0	0	0	0	15600	3138	14793	94319;94320;94321	127422;127423;127424	127423			3	
FGVIFAGAQK	1	Unmodified	1036.5706	0.57056597	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.4		8	4					3	4	5	5	5	4	63.554	59.416	2	4.1237E-12	31608	160513_QHF_FH_JSI9Kac_6	154.35	129.53			0.98703	1.0146	32.283	19	8	Median	1.5451	1.2761	25.913	5	2	Median	0.90198	1.0226	24.24	5	2	Median	1.0171	1.001	28.161	5	2	Median	0.65545	0.67924	31.612	4	2	Median	6185500000	3459300000	2726200000	1229900000	578260000	651600000	1479900000	887090000	592770000	1699300000	864920000	834400000	1776500000	1129100000	647420000	15601	5697	14794	94322;94323;94324;94325;94326;94327;94328;94329;94330;94331;94332;94333;94334;94335;94336;94337;94338;94339;94340	127425;127426;127427;127428;127429;127430;127431;127432;127433;127434;127435;127436;127437;127438;127439;127440;127441;127442;127443;127444;127445;127446;127447;127448;127449;127450;127451;127452;127453	127448			29	
FGVPAEGR	0	Unmodified	831.4239	0.42390173	5354	Q9UJY1	HSPB8	Heat shock protein beta-8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.389	26.03	2	0.056686	21761	160511_QHF_FH_JSI11i_2	44.692	22.921			4.3646	4.5206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3646	4.5206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	619950000	62318000	557630000	0	0	0	0	0	0	619950000	62318000	557630000	0	0	0	15602	5354	14795	94341	127454	127454			1	
FGVPIIADGGIQTVGHVVK	1	Unmodified	1906.0676	0.06763264	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	87.301	86.747	3	8.6614E-11	77005	160511_QHF_FH_JSI10i_2	127.22	121.9			0.91696	1.0096	20.325	7	0	Median	1.3361	1.1445	NaN	1	0	Median	0.82982	1.0109	7.5843	2	0	Median	1.0766	1.0536	15.684	2	0	Median	0.75395	0.80442	32.127	2	0	Median	355740000	183000000	172740000	38910000	14131000	24779000	68625000	39239000	29386000	159720000	84730000	74987000	88485000	44899000	43586000	15603	1182	14796	94342;94343;94344;94345;94346;94347;94348	127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465;127466;127467;127468	127466			14	
FGVPVIADGGIQNVGHIAK	1	Unmodified	1891.0316	0.031581485	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.62	0.484		3	5							2	1	2	3	79.956	79.177	2;3	5.3892E-14	70576	160511_QHF_FH_JSI11i_3	147.64	137.15			0.98063	0.99507	14.284	7	2	Median	1.2921	1.0784	5.417	2	1	Median	0.86605	0.98639	NaN	1	0	Median	1.0737	1.0516	7.8138	2	0	Median	0.78216	0.82955	17.18	2	1	Median	1937200000	984930000	952250000	232790000	114900000	117890000	34633000	17738000	16895000	1051800000	480210000	571590000	617960000	372080000	245880000	15604	1015	14797	94349;94350;94351;94352;94353;94354;94355;94356	127469;127470;127471;127472;127473;127474;127475;127476;127477	127469			9	
FGVQMDRVDQSAVGFEYQGK	1	Unmodified	2260.0583	0.058266521	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	70.114	69.428	3	4.0094E-11	62014	160511_QHF_FH_JSI11i_3	129.2	119.94			0.73439	0.72366	14.619	4	2	Median	0.81008	0.72921	NaN	1	1	Median	0.58915	0.71815	NaN	1	1	Median	0.98978	0.93479	NaN	1	0	Median	0.66578	0.66854	NaN	1	0	Median	277370000	149420000	127950000	36284000	20905000	15379000	46252000	22452000	23800000	106260000	56546000	49712000	88578000	49516000	39062000	15605	2522	14798	94357;94358;94359;94360;94361	127478;127479;127480;127481;127482;127483;127484	127478			7	
FGVQTDRQDK	1	Unmodified	1192.5836	0.58364985	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							2	3	2		13.601	13.057	2;3	0.0017704	10653	160511_QHF_FH_JSI9i_2	57.149	40.517			1.078	1.1869	32.626	6	0	Median	2.7416	2.2181	NaN	1	0	Median	0.9789	1.1491	19.855	3	0	Median	1.1998	1.122	15.071	2	0	Median	NaN	NaN	NaN	0	0	Median	909470000	486440000	423040000	18008000	6774100	11234000	327230000	191240000	136000000	564230000	288430000	275810000	0	0	0	15606	2522	14799	94362;94363;94364;94365;94366;94367;94368	127485;127486;127487;127488;127489	127488			5	
FGVSSESKPEEVKK	3	Unmodified	1549.7988	0.79878758	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	20.195	19.96	3	0.012098	16213	160511_QHF_FH_JSI12i_3	52.265	38.236			1.4325	1.3423	79.248	5	5	Median	NaN	NaN	NaN	0	0	Median	1.449	1.6909	NaN	1	1	Median	0.76327	0.71441	89.192	2	2	Median	0.80584	0.81245	109.16	2	2	Median	350260000	194480000	155780000	0	0	0	18091000	5453400	12638000	236050000	125530000	110530000	96120000	63502000	32618000	15607	1684	14800	94369;94370;94371;94372;94373	127490;127491;127492;127493;127494	127494			5	
FGVSSSSSGPSQTLTSTGNFK	1	Unmodified	2074.9807	0.98072771	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	57.568	57.033	2;3	8.0045E-187	50592	160511_QHF_FH_JSI11i_3	322.35	308.93			1.1796	0.92405	22.15	4	1	Linear	1.3021	1.1064	NaN	1	0	Median	0.81834	1.0012	NaN	1	0	Median	1.0685	0.99927	NaN	1	0	Median	1.5073	1.5945	NaN	1	1	Median	133300000	67512000	65787000	29739000	14719000	15020000	32007000	20435000	11572000	50194000	22808000	27386000	21359000	9550300	11808000	15608	1684	14801	94374;94375;94376;94377;94378;94379	127495;127496;127497;127498;127499;127500;127501;127502	127495			8	
FGVSSVAEAMALGR	0	Unmodified	1393.7024	0.70238478	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				84.084	82.802	2	0.0086167	68063	160511_QHF_FH_JSI9i_3	48.188	37.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15609	1307	14802	94380	127503	127503			1	
FGVSTGR	0	Unmodified	722.37114	0.37113788	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	17.35	16.724	2	0.020338	14058	160511_QHF_FH_JSI9i_2	57.102	24.989			0.8349	0.93532	23.766	5	0	Median	1.2143	1.0343	NaN	1	0	Median	1.3316	1.4942	NaN	1	0	Median	0.82031	0.82812	NaN	1	0	Median	0.8324	0.89559	6.1377	2	0	Median	558910000	286360000	272560000	89632000	36041000	53591000	102440000	41808000	60636000	112270000	60283000	51991000	254560000	148230000	106340000	15610	2286	14803	94381;94382;94383;94384;94385	127504;127505;127506;127507	127506			4	
FGVTSGSSELEK	1	Unmodified	1239.5983	0.59829686	3348	Q86VX2	COMMD7	COMM domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		38.927	38.105	2	0.00050654	32603	160511_QHF_FH_JSI11i_2	85.355	65.025			1.6785	1.4223	22.639	3	3	Plateau	2.1035	1.8014	NaN	1	1	Median	1.6785	2.0309	NaN	1	1	Median	1.3181	1.3105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73075000	30062000	43013000	24723000	9626000	15097000	14870000	5804400	9065500	33482000	14631000	18850000	0	0	0	15611	3348	14804	94386;94387;94388;94389	127508;127509;127510;127511	127509			4	
FGVVGFHESLSHELK	1	Unmodified	1684.8573	0.85730551	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	61.604	58.966	4	7.4137E-05	50574	160511_QHF_FH_JSI12i_3	70.281	59.796			1.0496	1.0917	35.21	4	0	Median	1.9191	1.6601	NaN	1	0	Median	1.0523	1.2109	NaN	1	0	Median	1.047	0.98423	NaN	1	0	Median	0.70989	0.71871	NaN	1	0	Median	328580000	182900000	145680000	10722000	3900700	6820800	32340000	17048000	15293000	145170000	72108000	73059000	140350000	89843000	50507000	15612	3489	14805	94390;94391;94392;94393	127512;127513;127514;127515;127516	127516			5	
FGVVLDEIKPSSAPELQAVR	1	Unmodified	2154.1685	0.1684689	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	3	4	3	83.792	83.234	2;3	7.707E-23	72344	160511_QHF_FH_JSI12i_3	133.77	105.44			0.85604	0.87937	36.46	10	4	Median	1.1161	0.94475	NaN	1	0	Median	0.8152	0.94688	54.289	3	2	Median	1.0268	0.94977	23.495	4	2	Median	0.59562	0.63596	7.9592	2	0	Median	2929400000	1583800000	1345600000	442060000	152170000	289890000	585980000	300120000	285860000	1299100000	713470000	585600000	602300000	418020000	184280000	15613	178	14806	94394;94395;94396;94397;94398;94399;94400;94401;94402;94403;94404;94405	127517;127518;127519;127520;127521;127522;127523;127524;127525;127526;127527;127528;127529;127530;127531;127532;127533;127534;127535;127536	127536			20	
FGVVVVGVGR	0	Unmodified	987.58655	0.58655038	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.24			2					3	4	3	3	2	1	68.483	60.623	2	3.4259E-12	32812	160513_QHF_FH_JSI11Kac_6	155.51	99.388			1.1531	1.108	33.432	9	1	Median	1.5786	1.3378	8.3972	3	0	Median	0.84302	1.0079	50.338	3	1	Plateau	1.1067	1.0761	4.1308	2	0	Median	0.66227	0.69902	NaN	1	0	Median	2280300000	1063100000	1217200000	632290000	225010000	407280000	853440000	456330000	397110000	533890000	231530000	302370000	260670000	150210000	110460000	15614	1791	14807	94406;94407;94408;94409;94410;94411;94412;94413;94414	127537;127538;127539;127540;127541;127542;127543;127544;127545;127546;127547;127548;127549;127550;127551	127542			15	
FGVYDIDNK	1	Unmodified	1069.508	0.50802529	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	6	4					2			2	3	3	4	51.726	50.902	2	4.9308E-07	45838	160511_QHF_FH_JSI10i_1	138.54	114.57			0.86106	0.94028	23.07	8	2	Median	1.4675	1.227	13.995	2	0	Median	0.75467	0.9039	0.37737	2	0	Median	1.0968	1.0968	16.575	2	1	Median	0.67509	0.72175	0.96683	2	1	Median	1627300000	863820000	763460000	341730000	158180000	183560000	450720000	285490000	165230000	483620000	215530000	268090000	351200000	204620000	146580000	15615	479	14808	94415;94416;94417;94418;94419;94420;94421;94422;94423;94424;94425;94426	127552;127553;127554;127555;127556;127557;127558;127559;127560;127561;127562;127563;127564;127565;127566;127567;127568	127560			17	
FGYDEIDNGYLK	1	Unmodified	1432.6511	0.65106071	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		67	66.417	2	2.8459E-06	60161	160511_QHF_FH_JSI10i_1	121.5	99.416			0.80529	0.94156	16.173	3	3	Median	1.2085	0.97189	NaN	1	1	Median	0.80529	0.94156	NaN	1	1	Median	0.74623	0.72387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	201150000	109410000	91745000	40829000	17908000	22920000	83733000	49406000	34327000	76590000	42092000	34498000	0	0	0	15616	2624	14809	94427;94428;94429	127569;127570;127571	127570			3	
FGYHIIMVEGR	0	Unmodified	1320.6649	0.66487706	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	64.004	58.376	2;3	5.4796E-20	31695	160513_QHF_FH_JSI11Kac_6	168.8	140.4			0.93126	0.99736	23.778	14	1	Median	1.4723	1.2228	12.231	4	1	Median	0.84726	0.98701	4.7335	4	0	Median	0.98105	0.92778	5.512	3	0	Plateau	0.61663	0.65745	12.35	3	0	Median	2453300000	1229300000	1224000000	558130000	232770000	325360000	1040400000	544300000	496130000	575810000	264590000	311220000	278960000	187650000	91307000	15617	5489	14810	94430;94431;94432;94433;94434;94435;94436;94437;94438;94439;94440;94441;94442;94443	127572;127573;127574;127575;127576;127577;127578;127579;127580;127581;127582;127583;127584;127585;127586;127587;127588;127589;127590;127591;127592	127580			21	
FGYHIIMVEGR	0	Oxidation (M)	1336.6598	0.65979168	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	1	2	59.683	50.268	3	0.00046252	26357	160513_QHF_FH_JSI12Kac_6	70.488	54.351			0.67439	0.80531	40.318	5	0	Median	1.5797	1.3739	NaN	1	0	Median	0.67439	0.80531	NaN	1	0	Median	1.407	1.3848	NaN	1	0	Median	0.59344	0.62191	0.72247	2	0	Median	282700000	175910000	106790000	66952000	29670000	37282000	90664000	60433000	30231000	25511000	13858000	11653000	99570000	71947000	27623000	15618	5489	14810	94444;94445;94446;94447;94448;94449	127593;127594;127595;127596;127597;127598;127599;127600;127601	127598		2678	9	
FGYHIIMVEGRK	1	Unmodified	1448.7598	0.75984008	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	57.289	48.276	3;4	0.00035931	26470	160513_QHF_FH_JSI10Kac_6	67.749	60.731			1.1216	1.2714	26.337	4	2	Median	2.0469	1.7587	NaN	1	1	Median	0.95818	1.1272	26.373	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0869	1.1901	NaN	1	0	Median	96459000	44740000	51719000	12398000	4958400	7439800	74783000	34774000	40009000	0	0	0	9277600	5007800	4269800	15619	5489	14811	94450;94451;94452;94453	127602;127603;127604;127605;127606;127607	127606			6	
FGYPFVIIAGK	1	Unmodified	1210.675	0.67503104	3225	Q7L3T8	PARS2	Probable proline--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	2	1		87.822	81.667	2	0.0010844	42880	160513_QHF_FH_JSI9Kac_6	84.476	72.25			0.69898	0.8214	84.906	4	3	Median	1.5692	1.3539	NaN	1	1	Median	0.69898	0.8214	44.176	2	1	Median	0.21423	0.20601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	337030000	260880000	76148000	38453000	13243000	25211000	36256000	19654000	16602000	262320000	227980000	34336000	0	0	0	15620	3225	14812	94454;94455;94456;94457	127608;127609;127610;127611	127610			4	
FGYQFTQQGPR	0	Unmodified	1327.6309	0.63093439	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	47.521	46.918	2	4.1049E-06	38993	160511_QHF_FH_JSI10i_3	111.46	99.965			0.99038	1.1512	34.17	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.99038	1.1512	NaN	1	0	Median	1.1967	1.1092	NaN	1	1	Median	0.6028	0.6258	NaN	1	1	Median	350100000	208760000	141340000	0	0	0	122660000	74076000	48583000	112130000	57835000	54297000	115310000	76851000	38464000	15621	5130	14813	94458;94459;94460;94461;94462	127612;127613;127614;127615;127616;127617	127614			6	
FGYTVSEENYMCR	0	Unmodified	1654.6756	0.67557768	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.639	55.283	2	3.5455E-05	47851	160511_QHF_FH_JSI11i_2	80.706	74.734			0.66489	0.73553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66489	0.73553	NaN	1	1	Median	20947000	14498000	6448600	0	0	0	0	0	0	0	0	0	20947000	14498000	6448600	15622	4048	14814	94463;94464	127618;127619	127619			2	
FGYVDFESAEDLEK	1	Unmodified	1647.7304	0.73043325	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	3.2	7	5	4					1		4	4	5	4	80.064	78.758	2;3	7.3497E-40	72205	160511_QHF_FH_JSI11i_1	199.43	180.69			0.94556	0.94946	34.52	15	4	Median	1.2474	1.0319	9.3462	4	1	Median	0.78937	0.93645	4.0871	4	0	Median	0.94696	0.94069	4.6948	4	1	Median	0.64088	0.68224	88.769	3	2	Median	6317300000	3221800000	3095500000	1085300000	431700000	653650000	2068000000	1176500000	891510000	1855200000	796740000	1058400000	1308700000	816810000	491920000	15623	1154	14815	94465;94466;94467;94468;94469;94470;94471;94472;94473;94474;94475;94476;94477;94478;94479;94480;94481	127620;127621;127622;127623;127624;127625;127626;127627;127628;127629;127630;127631;127632;127633;127634;127635;127636;127637;127638;127639;127640;127641;127642;127643;127644;127645;127646;127647;127648;127649;127650;127651;127652;127653;127654;127655;127656;127657;127658;127659;127660;127661;127662;127663;127664;127665;127666;127667	127623			48	
FHAFILGLLNTK	1	Unmodified	1372.7867	0.78670675	4480	Q9BVN2	RUSC1	RUN and SH3 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	85.702	77.451	3	6.0601E-13	43954	160513_QHF_FH_JSI10Kac_6	125.74	95.805			1.3411	1.5465	46.054	4	2	Median	0.84841	0.72477	NaN	1	0	Median	1.103	1.3242	NaN	1	0	Median	2.0365	2.0266	NaN	1	1	Median	1.6306	1.8062	NaN	1	1	Median	245680000	112250000	133430000	101390000	48651000	52737000	95509000	50092000	45417000	34520000	9188500	25332000	14264000	4323200	9940700	15624	4480	14816	94482;94483;94484;94485;94486;94487	127668;127669;127670;127671;127672;127673;127674;127675	127674			8	
FHAIYWPAFLLGAGMSPPQR	0	Unmodified	2258.1459	0.14589974	4098	Q96GW9	MARS2	Methionine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.31	85.918	3	8.6998E-05	48570	160513_QHF_FH_JSI11Kac_6	67.449	52.195			0.73039	0.71523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73039	0.71523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88630000	53910000	34720000	0	0	0	0	0	0	88630000	53910000	34720000	0	0	0	15625	4098	14817	94488	127676	127676			1	
FHAIYWPAFLLGAGMSPPQR	0	Oxidation (M)	2274.1408	0.14081436	4098	Q96GW9	MARS2	Methionine--tRNA ligase, mitochondrial	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				91.43	82.652	3	0.0013307	46319	160513_QHF_FH_JSI9Kac_6	71.263	56.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25348000	0	25348000	25348000	0	25348000	0	0	0	0	0	0	0	0	0	15626	4098	14817	94489	127677	127677		2390	1	
FHALAQPGLPGLVLPYK	1	Unmodified	1820.0349	0.034875949	4663	Q9H211	CDT1	DNA replication factor Cdt1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		87.625	87.625	3	0.00022148	78198	160511_QHF_FH_JSI11i_3	62.357	56.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15627	4663	14818	94490	127678	127678			1	
FHALGPIYYR	0	Unmodified	1235.6451	0.64512789	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.42	6.41			7						5	2	6	2	2	54.948	49.882	2;3	1.3481E-05	42059	160511_QHF_FH_JSI10i_3	74.92	60.802			0.96024	1.0371	21.746	10	0	Median	1.2463	1.0371	1.7558	2	0	Median	0.97357	1.1338	11.468	4	0	Median	0.78312	0.73551	24.865	2	0	Median	0.8689	0.89899	26.843	2	0	Median	435400000	223040000	212360000	106260000	45800000	60456000	200480000	102440000	98039000	73720000	44153000	29567000	54943000	30644000	24300000	15628	5388	14819	94491;94492;94493;94494;94495;94496;94497;94498;94499;94500;94501;94502	127679;127680;127681;127682;127683;127684;127685;127686;127687;127688;127689;127690;127691	127679			11	
FHALIQK	1	Unmodified	855.49667	0.49667274	4787	Q9H8M7	FAM188A	Protein FAM188A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			23.35	22.118	3	0.021652	18160	160511_QHF_FH_JSI10i_3	38.818	7.5152			0.71237	0.8385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71237	0.8385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16193000	8104800	8088600	0	0	0	16193000	8104800	8088600	0	0	0	0	0	0	15629	4787	14820	94503	127692	127692			1	
FHDFLGDSWGILFSHPR	0	Unmodified	2029.9799	0.97988027	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.18	44	16	124	2					38	18	60	74	72	105.36	103.74	2;3;4	4.6514E-83	45237	160513_QHF_FH_JSI11Kac_6	281.38	259.82			1.041	1.046	21.358	222	46	Median	1.18	1.0223	14.312	18	3	Median	0.84808	0.9843	22.675	59	14	Median	1.1661	1.0985	23.433	74	16	Plateau	0.93791	0.98166	17.767	71	13	Plateau	71895000000	35157000000	36738000000	10392000000	4675700000	5716300000	38978000000	20303000000	18674000000	14681000000	6389800000	8291400000	7843900000	3787900000	4055900000	15630	1333	14821	94504;94505;94506;94507;94508;94509;94510;94511;94512;94513;94514;94515;94516;94517;94518;94519;94520;94521;94522;94523;94524;94525;94526;94527;94528;94529;94530;94531;94532;94533;94534;94535;94536;94537;94538;94539;94540;94541;94542;94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553;94554;94555;94556;94557;94558;94559;94560;94561;94562;94563;94564;94565;94566;94567;94568;94569;94570;94571;94572;94573;94574;94575;94576;94577;94578;94579;94580;94581;94582;94583;94584;94585;94586;94587;94588;94589;94590;94591;94592;94593;94594;94595;94596;94597;94598;94599;94600;94601;94602;94603;94604;94605;94606;94607;94608;94609;94610;94611;94612;94613;94614;94615;94616;94617;94618;94619;94620;94621;94622;94623;94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638;94639;94640;94641;94642;94643;94644;94645;94646;94647;94648;94649;94650;94651;94652;94653;94654;94655;94656;94657;94658;94659;94660;94661;94662;94663;94664;94665;94666;94667;94668;94669;94670;94671;94672;94673;94674;94675;94676;94677;94678;94679;94680;94681;94682;94683;94684;94685;94686;94687;94688;94689;94690;94691;94692;94693;94694;94695;94696;94697;94698;94699;94700;94701;94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715;94716;94717;94718;94719;94720;94721;94722;94723;94724;94725;94726;94727	127693;127694;127695;127696;127697;127698;127699;127700;127701;127702;127703;127704;127705;127706;127707;127708;127709;127710;127711;127712;127713;127714;127715;127716;127717;127718;127719;127720;127721;127722;127723;127724;127725;127726;127727;127728;127729;127730;127731;127732;127733;127734;127735;127736;127737;127738;127739;127740;127741;127742;127743;127744;127745;127746;127747;127748;127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759;127760;127761;127762;127763;127764;127765;127766;127767;127768;127769;127770;127771;127772;127773;127774;127775;127776;127777;127778;127779;127780;127781;127782;127783;127784;127785;127786;127787;127788;127789;127790;127791;127792;127793;127794;127795;127796;127797;127798;127799;127800;127801;127802;127803;127804;127805;127806;127807;127808;127809;127810;127811;127812;127813;127814;127815;127816;127817;127818;127819;127820;127821;127822;127823;127824;127825;127826;127827;127828;127829;127830;127831;127832;127833;127834;127835;127836;127837;127838;127839;127840;127841;127842;127843;127844;127845;127846;127847;127848;127849;127850;127851;127852;127853;127854;127855;127856;127857;127858;127859;127860;127861;127862;127863;127864;127865;127866;127867;127868;127869;127870;127871;127872;127873;127874;127875;127876;127877;127878;127879;127880;127881;127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898;127899;127900;127901;127902;127903;127904;127905;127906;127907;127908;127909;127910;127911;127912;127913;127914;127915;127916;127917;127918;127919;127920	127824			210	
FHDIDDVK	1	Unmodified	987.46616	0.46616048	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	21.514	20.765	2	0.029875	17036	160511_QHF_FH_JSI11i_2	50.04	31.31			1.7641	1.8226	12.63	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0172	1.9928	NaN	1	1	Median	1.5428	1.6669	NaN	1	1	Median	80525000	28727000	51798000	0	0	0	0	0	0	48084000	15321000	32763000	32441000	13406000	19035000	15631	4682	14822	94728;94729	127921;127922	127922			2	
FHDKRDAEDAMDAMDGAVLDGR	1	Acetyl (K)	2476.0747	0.074721221	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		75.885	66.548	3	0.00014806	36301	160513_QHF_FH_JSI11Kac_6	109.75	101.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14351000	14351000	0	0	0	0	0	0	0	14351000	14351000	0	0	0	0	15632	2165	14823	94730	127923	127923	2284		1	
FHDLLSQLDDQYSR	0	Unmodified	1735.8166	0.81656291	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		69.604	68.866	2;3	0.00125	61150	160511_QHF_FH_JSI10i_2	78.096	69.142			0.83979	0.89553	7.6414	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.68593	0.84563	9.74	2	1	Median	0.90574	0.89553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91521000	49752000	41770000	0	0	0	47367000	28669000	18698000	44154000	21083000	23072000	0	0	0	15633	1528	14824	94731;94732;94733	127924;127925	127925			2	
FHDPDSAVVAQHLTNTVFVDR	0	Unmodified	2367.1608	0.16075776	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1		3	2	1	70.705	70.208	3;4	1.5937E-09	60359	160511_QHF_FH_JSI12i_3	99.999	90.952			1.2281	1.2253	22.048	5	1	Median	NaN	NaN	NaN	0	0	Median	0.97277	1.1946	32.612	2	1	Median	1.0933	1.0673	19.527	2	0	Median	1.3981	1.4011	NaN	1	0	Median	288720000	122920000	165800000	0	0	0	54747000	24366000	30381000	112180000	51700000	60477000	121790000	46852000	74942000	15634	2230	14825	94734;94735;94736;94737;94738;94739	127926;127927;127928;127929;127930;127931;127932	127931			5	
FHDTSSPLLISGTSAAELPWAVKPEDK	2	Unmodified	2895.4654	0.46543878	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.461	88.35	4	2.0866E-12	76676	160511_QHF_FH_JSI12i_3	79.445	73.785			1.2568	1.2973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2568	1.2973	NaN	1	1	Median	25414000	7075200	18338000	0	0	0	0	0	0	0	0	0	25414000	7075200	18338000	15635	1537	14826	94740	127933;127934	127934			2	
FHEAQLSEK	1	Unmodified	1087.5298	0.52982336	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								3	1	1	2	15.252	14.55	2;3	0.0018676	12065	160511_QHF_FH_JSI9i_2	55.549	39.347			1.607	1.714	46.215	6	3	Median	1.7954	1.537	31.072	2	1	Median	1.2381	1.5343	NaN	1	0	Median	1.0065	1.0088	NaN	1	0	Median	2.4599	2.7687	44.286	2	2	Median	638370000	270320000	368050000	220330000	85352000	134980000	79988000	37923000	42064000	130560000	66742000	63819000	207490000	80298000	127190000	15636	558	14827	94741;94742;94743;94744;94745;94746;94747	127935;127936;127937;127938;127939;127940;127941;127942;127943	127939			9	
FHEICSNLVK	1	Unmodified	1245.6176	0.61759251	2611	Q15041	ARL6IP1	ADP-ribosylation factor-like protein 6-interacting protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		10.6	6.62		1	1						3	1		4		39.158	33.401	2;3	0.0031888	28788	160511_QHF_FH_JSI11i_3	52.579	40.002			0.71739	0.70034	46.405	5	5	Median	0.4747	0.42298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74465	0.71809	45.995	4	4	Median	NaN	NaN	NaN	0	0	Median	145410000	86165000	59244000	3144000	2129200	1014800	0	0	0	142260000	84035000	58230000	0	0	0	15637	2611	14828	94748;94749;94750;94751;94752	127944;127945;127946;127947;127948	127944			5	
FHEVFKTLAESDEGK	2	Acetyl (K)	1777.8523	0.85227972	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		64.35	55.133	2;3	0.00046102	29882	160513_QHF_FH_JSI11Kac_6	85.734	67.933			1.5161	1.6121	26.956	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6624	1.9506	NaN	1	1	Median	1.3828	1.3323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33027000	14308000	18719000	0	0	0	16550000	5000300	11550000	16476000	9307400	7169000	0	0	0	15638	2284	14829	94753;94754;94755	127949;127950;127951;127952;127953	127949	2382		5	
FHFAIDR	0	Unmodified	904.45554	0.45553621	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	40.386	40.386	3	0.001961	34582	160511_QHF_FH_JSI12i_3	73.039	15.758			1.163	1.066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.163	1.066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28237000	13463000	14774000	0	0	0	0	0	0	28237000	13463000	14774000	0	0	0	15639	211	14830	94756;94757;94758;94759;94760;94761;94762	127954;127955;127956;127957;127958;127959;127960;127961	127961			8	
FHFSQSLTVIHDFLFSLK	1	Unmodified	2165.131	0.13096118	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.255	90.535	4	0.0021204	52421	160513_QHF_FH_JSI10Kac_6	61.684	52.637			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47051000	47051000	0	0	0	0	47051000	47051000	0	0	0	0	0	0	0	15640	4013	14831	94763	127962	127962			1	
FHGTVKAENGK	2	Acetyl (K)	1228.62	0.62003536	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								3	9	2	3	4	3	17.243	9.1584	2;3	1.583E-08	6540	160513_QHF_FH_JSI10Kac_6	117.99	100.15			0.6232	0.66779	180.05	10	1	Median	0.93186	0.80892	5.1918	2	0	Median	1.0515	1.2291	7.8111	2	0	Median	0.028386	0.026715	268.08	3	1	Plateau	0.62434	0.66974	9.9408	3	0	Plateau	1465600000	872280000	593370000	101140000	56331000	44811000	456540000	189640000	266900000	682520000	498870000	183650000	225440000	127430000	98005000	15641	812	14832	94764;94765;94766;94767;94768;94769;94770;94771;94772;94773;94774;94775	127963;127964;127965;127966;127967;127968;127969;127970;127971;127972;127973;127974;127975;127976;127977;127978;127979;127980	127978	448		18	
FHHTFSTEIAK	1	Unmodified	1316.6513	0.65133548	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	1	2	2	5	28.832	27.513	2;3	6.4185E-10	22191	160511_QHF_FH_JSI12i_3	108.35	98.296			1.3922	1.3329	79.818	8	2	Median	0.5917	0.49987	NaN	1	1	Median	0.79899	0.90975	NaN	1	0	Median	1.2484	1.152	11.446	2	0	Median	1.587	1.651	82.27	4	1	Median	919730000	333340000	586390000	4978800	2943700	2035100	36140000	19870000	16271000	169610000	64101000	105510000	709000000	246430000	462570000	15642	1034	14833	94776;94777;94778;94779;94780;94781;94782;94783;94784;94785	127981;127982;127983;127984;127985;127986;127987;127988;127989;127990;127991;127992;127993;127994	127988			13	
FHINQPALK	1	Unmodified	1066.5924	0.59236404	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	37.518	37.109	2;3	2.3507E-05	31589	160511_QHF_FH_JSI12i_3	105.39	82.899			0.81712	0.78896	50.425	4	1	Median	NaN	NaN	NaN	0	0	Median	1.123	1.2987	NaN	1	0	Median	0.57292	0.5274	43.942	2	1	Median	0.85371	0.86503	NaN	1	0	Median	663860000	404080000	259780000	0	0	0	37073000	18843000	18230000	457030000	285780000	171250000	169750000	99456000	70298000	15643	3605	14834	94786;94787;94788;94789;94790	127995;127996;127997;127998;127999;128000;128001	128000			7	
FHINWEDNTEK	1	Unmodified	1431.6419	0.64189301	5504	Q9Y294	ASF1A	Histone chaperone ASF1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	45.947	45.826	2;3	1.7487E-06	39281	160511_QHF_FH_JSI12i_3	91.549	83.036			0.812	0.80118	12.538	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95133	0.87527	17.148	2	1	Median	0.77664	0.78456	7.6061	2	0	Median	271450000	140930000	130520000	0	0	0	0	0	0	111490000	56466000	55025000	159960000	84466000	75492000	15644	5504	14835	94791;94792;94793;94794	128002;128003;128004;128005;128006;128007	128007			5	
FHISEFPTLK	1	Unmodified	1217.6445	0.64445919	2542	Q14554	PDIA5	Protein disulfide-isomerase A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	65.303	64.778	2;3	0.00018384	55792	160511_QHF_FH_JSI12i_3	61.56	53.635			1.0061	0.9429	38.035	8	4	Median	0.9417	0.82754	NaN	1	0	Median	1.0794	1.2741	NaN	1	0	Median	0.58718	0.53684	46.524	3	3	Median	1.2916	1.272	27.774	3	1	Plateau	266230000	142020000	124210000	12810000	8503800	4305900	17014000	8875000	8139200	108700000	60866000	47830000	127710000	63775000	63936000	15645	2542	14836	94795;94796;94797;94798;94799;94800;94801;94802	128008;128009;128010;128011;128012;128013;128014;128015;128016	128015			9	
FHISPEGFLTINDVGPADAGR	0	Unmodified	2212.0913	0.091281208	3865	Q92626	PXDN	Peroxidasin homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.004	89.916	3	0.044624	78110	160511_QHF_FH_JSI12i_3	14.326	5.1617			0.77915	0.84768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77915	0.84768	NaN	1	1	Median	9376500	5447300	3929200	0	0	0	0	0	0	0	0	0	9376500	5447300	3929200	15646	3865	14837	94803	128017	128017			1	
FHKPGENYK	2	Acetyl (K)	1160.5615	0.56145784	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		30.708	21.469	3	0.00019174	12366	160513_QHF_FH_JSI11Kac_6	79.16	54.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15647	1609	14838	94804	128018	128018	1633		1	
FHLESVMIANPNVPAYR	0	Unmodified	1956.988	0.98800211	4563	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.52	76.382	3	0.0017455	66275	160511_QHF_FH_JSI12i_3	33.547	21.629			2.1209	2.058	34.2	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7992	2.6211	NaN	1	1	Median	1.6069	1.616	NaN	1	1	Median	66347000	21379000	44969000	0	0	0	0	0	0	37980000	12147000	25833000	28368000	9231800	19136000	15648	4563	14839	94805;94806	128019;128020	128020			2	
FHLGLFTDR	0	Unmodified	1104.5716	0.5716286	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	3	2	2	69.454	65.063	3	7.6736E-06	57537	160511_QHF_FH_JSI11i_3	86.67	75.506			1.0394	0.93577	24.928	7	0	Median	1.2472	0.98276	NaN	1	0	Median	0.78047	0.8915	39.596	3	0	Median	0.93972	0.87717	9.1457	2	0	Median	1.0536	1.1333	NaN	1	0	Median	159130000	78432000	80695000	30370000	12449000	17921000	61859000	34869000	26990000	60927000	28576000	32351000	5970400	2537700	3432600	15649	3736	14840	94807;94808;94809;94810;94811;94812;94813;94814;94815;94816	128021;128022;128023;128024;128025;128026;128027;128028;128029;128030	128021			9	
FHLISPLIQK	1	Unmodified	1194.7125	0.71247918	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.48			10						3	3	4	4	2	67.584	65.011	2;3	1.0946E-05	54709	160511_QHF_FH_JSI10i_3	93.649	82.116			0.97928	0.90667	41.535	13	4	Median	1.0468	0.84801	6.5364	3	0	Plateau	0.92813	1.0841	72.953	4	2	Median	1.1335	1.0724	28.431	4	2	Median	0.8605	0.86966	5.8941	2	0	Median	2067200000	992190000	1075000000	330030000	163900000	166130000	285180000	167860000	117310000	560060000	242830000	317230000	891910000	417600000	474310000	15650	387	14841	94817;94818;94819;94820;94821;94822;94823;94824;94825;94826;94827;94828;94829	128031;128032;128033;128034;128035;128036;128037;128038;128039;128040;128041;128042;128043;128044;128045;128046;128047;128048	128035			18	
FHLLELEK	1	Unmodified	1027.5702	0.57023162	200	O14770;A6NDR6;A8K0S8;Q99687;O00470	MEIS2;MEIS3P1;MEIS3P2;MEIS3;MEIS1	Homeobox protein Meis2;Putative homeobox protein Meis3-like 1;Putative homeobox protein Meis3-like 2;Homeobox protein Meis3;Homeobox protein Meis1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	58.145	57.616	3	0.0013664	50862	160511_QHF_FH_JSI11i_3	66.073	43.432			1.2296	1.2265	43.853	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7663	1.6725	NaN	1	1	Median	0.85594	0.89953	NaN	1	1	Median	35834000	11323000	24511000	0	0	0	0	0	0	17446000	5976800	11469000	18388000	5346500	13041000	15651	200	14842	94830;94831;94832;94833;94834	128049;128050;128051;128052;128053;128054	128050			6	
FHMAAEEMEWFNNYKR	1	2 Oxidation (M)	2133.9037	0.90368013	2565	Q14691	GINS1	DNA replication complex GINS protein PSF1	yes	yes	0	0	2	1		By MS/MS			1	0	1										1			29.204	28.879	2	0.0098693	25666	160511_QHF_FH_JSI10i_1	40.496	24.147			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15652	2565	14843	94835	128055	128055		2008;2009	1	
FHMDSETHDPIDLQTK	1	Unmodified	1912.8625	0.86252683	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	48.605	48.485	3;4	6.7292E-05	42869	160511_QHF_FH_JSI11i_3	71.354	59.586			1.4105	1.415	10.997	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5517	1.4213	16.698	2	0	Median	1.3832	1.415	9.1541	2	0	Median	228980000	101130000	127850000	0	0	0	0	0	0	89451000	35025000	54426000	139530000	66105000	73427000	15653	5523	14844	94836;94837;94838;94839	128056;128057;128058;128059	128056			4	
FHMMNGSK	1	Unmodified	950.41024	0.41024228	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By matching		By MS/MS	3	0			2								1		1	14.268	13.839	2	0.03296	10576	160511_QHF_FH_JSI12i_3	41.029	26.616			1.3767	1.5059	35.25	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0013	1.1737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8929	1.9322	NaN	1	0	Median	145360000	52289000	93075000	0	0	0	27109000	14747000	12362000	0	0	0	118250000	37542000	80713000	15654	4983	14845	94840;94841	128060	128060			1	
FHMVDGNVSGEFTDLVPEK	1	Unmodified	2119.9885	0.98845562	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							3	3	4	4	81.052	80.444	2;3	3.1543E-55	71588	160511_QHF_FH_JSI10i_2	174.65	161.25			0.90657	0.94416	27.194	10	5	Median	0.96226	0.81616	NaN	1	0	Median	0.736	0.89948	5.2404	2	1	Median	0.88081	0.89197	35.782	3	1	Median	1.1594	1.187	26.388	4	3	Median	1486900000	717780000	769160000	161530000	81392000	80136000	241130000	133330000	107800000	585060000	278200000	306860000	499220000	224850000	274370000	15655	694	14846	94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852;94853;94854;94855	128061;128062;128063;128064;128065;128066;128067;128068;128069;128070;128071;128072;128073;128074;128075;128076;128077;128078;128079;128080;128081;128082;128083	128080			23	
FHMYEGYPLWK	1	Unmodified	1469.6802	0.68019277	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.44		14	3						4	4	3	9	5	74.149	71.666	3	1.1755E-05	63491	160511_QHF_FH_JSI11i_3	77.662	72.584			1.1562	1.2075	21.411	17	2	Median	1.4755	1.2778	21.099	3	0	Median	0.88641	1.0259	4.164	3	1	Plateau	1.2572	1.1907	30.42	7	1	Median	1.1611	1.256	1.7979	4	0	Median	692500000	345000000	347500000	88207000	39616000	48592000	205900000	107120000	98774000	280890000	140710000	140180000	117510000	57559000	59947000	15656	771	14847	94856;94857;94858;94859;94860;94861;94862;94863;94864;94865;94866;94867;94868;94869;94870;94871;94872;94873;94874;94875;94876	128084;128085;128086;128087;128088;128089;128090;128091;128092;128093;128094;128095;128096;128097;128098;128099;128100;128101;128102;128103;128104;128105;128106;128107;128108;128109;128110;128111	128085			25	
FHMYEGYPLWKVTFPVR	1	Acetyl (K)	2211.0976	0.09755256	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	91.522	82.349	3	2.5148E-05	44424	160513_QHF_FH_JSI12Kac_6	90.754	86.101			0.83745	0.8517	39.182	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66015	0.6456	NaN	1	0	Median	1.0624	1.1236	NaN	1	0	Median	154570000	76337000	78232000	19724000	0	19724000	0	0	0	87997000	53853000	34143000	46849000	22484000	24365000	15657	771	14848	94877;94878;94879	128112;128113;128114	128114	378		3	
FHNELNAHIK	1	Unmodified	1221.6255	0.62545508	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									1	3	24.095	23.457	4	0.0096053	17509	160511_QHF_FH_JSI12i_3	27.864	20.486			1.7082	1.7096	75.767	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9638	1.8166	NaN	1	0	Median	1.63	1.609	87.352	3	0	Median	379510000	151400000	228110000	0	0	0	0	0	0	94130000	33361000	60768000	285380000	118040000	167340000	15658	1016	14849	94880;94881;94882;94883	128115;128116;128117;128118	128118			4	
FHNWFDDR	0	Unmodified	1135.4835	0.48354187	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		44.798	44.798	3	0.020026	39541	160511_QHF_FH_JSI11i_3	28.209	21.549			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15659	1602	14850	94884	128119	128119			1	
FHPASVLSQPQYK	1	Unmodified	1500.7725	0.77251325	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	43.674	43.26	2;3	3.6728E-07	36799	160511_QHF_FH_JSI12i_3	136.33	119.69			0.91202	0.91087	15.07	6	0	Median	0.74568	0.64403	NaN	1	0	Median	0.78378	0.95938	NaN	1	0	Median	0.93772	0.87904	1.9145	2	0	Median	0.93801	0.94234	1.6891	2	0	Median	470860000	265750000	205110000	19624000	10811000	8812400	32963000	18511000	14452000	172020000	92712000	79305000	246260000	143720000	102540000	15660	4750	14851	94885;94886;94887;94888;94889;94890	128120;128121;128122;128123;128124;128125	128124			6	
FHPGLGYEQR	0	Unmodified	1202.5833	0.58325592	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.788	26.788	3	0.013905	23030	160511_QHF_FH_JSI11i_3	33.744	29.446			0.82144	0.75946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82144	0.75946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44169000	22933000	21235000	0	0	0	0	0	0	44169000	22933000	21235000	0	0	0	15661	5207	14852	94891	128126	128126			1	
FHPIQGHRVEVK	1	Unmodified	1445.7892	0.78916637	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	39.593	39.397	3	0.047531	33572	160511_QHF_FH_JSI12i_3	29.807	11.076			0.73636	0.75821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73636	0.75821	NaN	1	0	Median	64744000	32618000	32127000	0	0	0	0	0	0	0	0	0	64744000	32618000	32127000	15662	2361	14853	94892	128127	128127			1	
FHPNGSTLASAGFDR	0	Unmodified	1575.743	0.74300404	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			43.437	41.903	3	0.017421	34873	160511_QHF_FH_JSI10i_3	50.158	45.444			1.0478	1.2366	57.55	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0478	1.2366	57.55	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136980000	63832000	73147000	0	0	0	136980000	63832000	73147000	0	0	0	0	0	0	15663	4029	14854	94893;94894	128128;128129	128129			0	
FHPTPLLLSLLDFVAPSRPFVVYCQYK	1	Unmodified	3206.6991	0.6990843	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.234	92.513	4	4.3708E-13	54052	160513_QHF_FH_JSI10Kac_6	92.147	82.561			0.73026	0.86865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73026	0.86865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159760000	107570000	52195000	0	0	0	159760000	107570000	52195000	0	0	0	0	0	0	15664	5340	14855	94895	128130;128131	128130			2	
FHQFLVSETESGNISR	0	Unmodified	1849.8959	0.89587586	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.26		9	5						6	3	5	7	5	51.554	48.837	2;3	1.6939E-22	41542	160511_QHF_FH_JSI12i_3	148.7	145.08			0.97432	0.95028	25.274	15	2	Median	1.0253	0.87609	41.177	2	1	Median	0.71542	0.8499	25.219	4	0	Median	1.0384	1.0437	29.377	5	1	Median	0.93246	0.94612	16.343	4	0	Median	2144700000	1006700000	1138000000	182970000	68994000	113970000	437420000	270080000	167350000	820870000	345030000	475850000	703430000	322580000	380850000	15665	2282	14856	94896;94897;94898;94899;94900;94901;94902;94903;94904;94905;94906;94907;94908;94909;94910;94911;94912;94913;94914;94915	128132;128133;128134;128135;128136;128137;128138;128139;128140;128141;128142;128143;128144;128145;128146;128147;128148;128149;128150;128151;128152;128153;128154;128155;128156;128157;128158;128159;128160;128161;128162	128157			31	
FHQLDIDDLQSIR	0	Unmodified	1598.8053	0.80526994	1092;572	O75828;P16152	CBR3;CBR1	Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.3	3.62		18	7						2	5	6	8	8	69.71	68.302	2;3	6.9288E-16	58456	160511_QHF_FH_JSI12i_3	129.54	125.32			0.94195	1.0566	25.593	21	11	Median	1.326	1.1468	25.359	4	3	Median	0.94162	1.1469	16.184	3	1	Plateau	0.78541	0.80557	23.307	8	5	Median	1.2389	1.2391	29.86	6	2	Median	851440000	404980000	446460000	78030000	33308000	44721000	166160000	88199000	77962000	394040000	190840000	203190000	213210000	92632000	120580000	15666	572;1092	14857	94916;94917;94918;94919;94920;94921;94922;94923;94924;94925;94926;94927;94928;94929;94930;94931;94932;94933;94934;94935;94936;94937;94938;94939;94940;94941;94942	128163;128164;128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177;128178;128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190	128187			26	
FHSAYYSSNLMAVCVLGR	0	Oxidation (M)	2089.9714	0.97136577	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	73.605	64.073	3	0.00014786	33578	160513_QHF_FH_JSI12Kac_6	116.78	89.254			7.0189	7.3297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.0189	7.3297	NaN	1	1	Median	7168600	627900	6540700	0	0	0	0	0	0	0	0	0	7168600	627900	6540700	15667	1060	14858	94943	128191	128191		695	1	
FHSFSFYELK	1	Unmodified	1303.6237	0.62372375	5081	Q9NWZ3	IRAK4	Interleukin-1 receptor-associated kinase 4	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			71.79	63.722	3	0.0022452	35052	160513_QHF_FH_JSI10Kac_6	42.21	29.714			0.98246	0.98922	25.158	2	0	Median	1.3941	1.1818	NaN	1	0	Median	0.69238	0.82801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49836000	28059000	21777000	17123000	7018700	10104000	32714000	21040000	11673000	0	0	0	0	0	0	15668	5081	14859	94944;94945	128192	128192			1	
FHSLAPMYYR	0	Unmodified	1283.6121	0.61211321	2461	Q13636	RAB31	Ras-related protein Rab-31	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				46.445	44.835	2	0.018357	36643	160511_QHF_FH_JSI9i_3	49.813	37.186			2.0166	1.6993	NaN	1	1	Median	2.0166	1.6993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12057000	3315900	8741100	12057000	3315900	8741100	0	0	0	0	0	0	0	0	0	15669	2461	14860	94946	128193	128193			1	
FHSLKPK	2	Unmodified	855.49667	0.49667274	5163;4664	Q9NZN4;Q9H223	EHD2;EHD4	EH domain-containing protein 2;EH domain-containing protein 4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	8.126	7.8648	3	0.0090534	4986	160511_QHF_FH_JSI12i_3	56.011	20.131			1.1464	1.0296	41.979	4	2	Median	0.98556	0.79743	NaN	1	0	Median	0.49273	0.5768	NaN	1	0	Median	1.3883	1.3293	NaN	1	1	Median	1.3335	1.3745	NaN	1	1	Median	1388500000	689000000	699510000	404080000	186860000	217220000	253180000	150780000	102400000	244700000	130090000	114610000	486550000	221260000	265290000	15670	5163;4664	14861	94947;94948;94949;94950	128194;128195;128196;128197;128198	128198			5	
FHSLKPK	2	Acetyl (K)	897.50724	0.50723743	5163;4664	Q9NZN4;Q9H223	EHD2;EHD4	EH domain-containing protein 2;EH domain-containing protein 4	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	25.043	17.144	3	0.0098673	10123	160513_QHF_FH_JSI11Kac_6	68.915	23.197			0.0275	0.027291	336.5	3	3	Plateau	NaN	NaN	NaN	0	0	Median	4.7947	5.7394	NaN	1	1	Median	0.026003	0.025375	NaN	1	1	Median	11.191	12.062	NaN	1	1	Median	47646000	32893000	14753000	0	0	0	9475100	1229400	8245600	31664000	30924000	739750	6507000	739830	5767200	15671	5163;4664	14861	94951;94952;94953	128199;128200;128201	128199	3213		3	
FHSQLMR	0	Oxidation (M)	933.44907	0.44907062	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	10.09	9.6965	3	0.010835	7405	160511_QHF_FH_JSI10i_3	47.849	29.118			1.2568	1.0252	12.679	3	0	Plateau	1.2895	1.0252	NaN	1	0	Median	0.86866	1.0055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80432	0.81563	NaN	1	0	Median	275230000	129220000	146010000	163360000	66052000	97311000	70159000	36887000	33272000	0	0	0	41708000	26281000	15427000	15672	1661	14862	94954;94955;94956	128202;128203	128202		1345	2	
FHSQLMR	0	Unmodified	917.45416	0.454156	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	1	2		1	18.859	16.524	2;3	0.012876	9767	160513_QHF_FH_JSI10Kac_6	45.882	36.641			1.0608	1.1039	38.124	4	0	Median	0.88286	0.72351	NaN	1	0	Median	1.0981	1.2745	43.532	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2745	1.3008	NaN	1	0	Median	793490000	370670000	422820000	341470000	144460000	197010000	242880000	123320000	119560000	0	0	0	209140000	102890000	106250000	15673	1661	14862	94957;94958;94959;94960	128204;128205;128206	128206			3	
FHTEALTALLSDDSK	1	Unmodified	1646.8152	0.81516593	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.45		10	4						1	3	2	7	3	75.442	74.227	2;3	3.7459E-21	66315	160511_QHF_FH_JSI11i_3	136.7	120.03			1.2759	1.2036	52.903	14	7	Median	1.3016	1.1204	48.852	3	1	Median	1.1995	1.4719	33.408	2	1	Median	1.1397	1.0683	67.26	6	5	Median	1.5676	1.6135	52.834	3	0	Plateau	1739500000	789440000	950070000	254980000	65699000	189280000	321530000	160400000	161130000	752830000	369380000	383460000	410170000	193970000	216200000	15674	2010	14863	94961;94962;94963;94964;94965;94966;94967;94968;94969;94970;94971;94972;94973;94974;94975	128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222;128223;128224;128225;128226;128227	128210			20	
FHTITTSYYR	0	Unmodified	1287.6248	0.62478638	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.51		1	9						8	4	5	5	4	37.76	33.038	2;3	1.2269E-06	18188	160513_QHF_FH_JSI11Kac_6	111.61	103.01			0.91191	0.9498	14.076	17	0	Median	1.3544	1.1173	15.323	4	0	Median	0.80892	0.95528	5.6009	5	0	Median	0.96879	0.9406	3.3352	4	0	Median	0.77194	0.85482	7.4833	4	0	Linear	2015300000	984510000	1030800000	410920000	169130000	241790000	778380000	403930000	374450000	391410000	206410000	185010000	434560000	205040000	229520000	15675	1933	14864	94976;94977;94978;94979;94980;94981;94982;94983;94984;94985;94986;94987;94988;94989;94990;94991;94992;94993	128228;128229;128230;128231;128232;128233;128234;128235;128236;128237;128238;128239;128240;128241;128242;128243;128244;128245;128246;128247;128248;128249;128250;128251;128252;128253;128254;128255;128256;128257	128237			28	
FHTVSGSK	1	Unmodified	861.43447	0.43446642	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.83		5	7						4	4	3	5	4	6.3743	4.1672	2;3	0.00104	3422	160511_QHF_FH_JSI12i_3	62.546	54.321			0.85572	0.84016	39.222	15	3	Median	1.1199	0.92888	21.821	4	1	Median	0.73256	0.84911	34.957	3	1	Median	0.77931	0.7667	53.471	4	1	Median	0.88782	0.92522	49.051	4	0	Median	8597700000	3297500000	5300300000	876350000	331940000	544410000	620660000	313490000	307160000	2880500000	1254300000	1626200000	4220300000	1397700000	2822500000	15676	4308	14865	94994;94995;94996;94997;94998;94999;95000;95001;95002;95003;95004;95005;95006;95007;95008;95009	128258;128259;128260;128261;128262;128263;128264;128265;128266;128267;128268;128269;128270;128271;128272;128273;128274;128275	128270			18	
FHVDISLTDFIQK	1	Unmodified	1561.814	0.81404372	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	96.999	97.009	2;3	3.6428E-07	84065	160511_QHF_FH_JSI12i_3	127.17	114.3			1.0674	1.0692	7.8464	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1441	1.0462	NaN	1	0	Median	1.1421	1.1375	8.7497	2	1	Median	204200000	86841000	117360000	0	0	0	0	0	0	35056000	18459000	16597000	169150000	68382000	100760000	15677	2614	14866	95010;95011;95012	128276;128277;128278;128279;128280;128281;128282	128280			7	
FHVEEEGK	1	Unmodified	973.45051	0.45051041	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.34	6.02	3	13	10					10	2	7	9	12	10	15.142	11.986	2;3	1.1976E-05	7894	160513_QHF_FH_JSI11Kac_5	116.73	109.83			0.81899	0.85107	83.814	38	18	Median	0.99605	0.82022	105.09	7	3	Median	0.73523	0.86108	92.53	9	5	Median	0.84079	0.81588	59.001	12	5	Median	0.81492	0.89327	97.15	10	5	Median	33258000000	16607000000	16651000000	4802900000	2266900000	2536000000	8178200000	4142800000	4035300000	12501000000	6491700000	6009000000	7776100000	3705600000	4070500000	15678	775;866	14867	95013;95014;95015;95016;95017;95018;95019;95020;95021;95022;95023;95024;95025;95026;95027;95028;95029;95030;95031;95032;95033;95034;95035;95036;95037;95038;95039;95040;95041;95042;95043;95044;95045;95046;95047;95048;95049;95050	128283;128284;128285;128286;128287;128288;128289;128290;128291;128292;128293;128294;128295;128296;128297;128298;128299;128300;128301;128302;128303;128304;128305;128306;128307;128308;128309;128310;128311;128312;128313;128314;128315;128316;128317;128318;128319;128320;128321;128322;128323;128324;128325;128326;128327;128328;128329;128330;128331;128332;128333;128334;128335;128336;128337;128338;128339;128340;128341	128322			57	
FHVEEEGKGK	2	Acetyl (K)	1200.5775	0.57750184	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	28.36	19.135	3	0.0020482	11162	160513_QHF_FH_JSI12Kac_5	58.699	46.536			0.94261	1.0615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94261	1.0615	NaN	1	0	Median	4834200	2755100	2079100	0	0	0	0	0	0	0	0	0	4834200	2755100	2079100	15679	775	14868	95051	128342	128342	394		1	
FHYGTAFGGSK	1	Unmodified	1170.5458	0.54580778	5057	Q9NW08	POLR3B	DNA-directed RNA polymerase III subunit RPC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	29.822	28.895	3	0.00041582	23925	160511_QHF_FH_JSI12i_3	61.213	55.251			0.97112	0.99565	26.059	3	1	Plateau	0.72349	0.60328	NaN	1	1	Median	0.78275	0.87764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99088	0.99565	NaN	1	0	Median	124070000	63231000	60843000	13554000	7160700	6393300	22682000	9796400	12885000	0	0	0	87837000	46273000	41564000	15680	5057	14869	95052;95053;95054	128343;128344;128345	128345			3	
FIADQLDHLNVTK	1	Unmodified	1512.7936	0.79364262	4358	Q9BQC6	MRPL57	Ribosomal protein 63, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	2	2	61.251	60.351	2;3	5.0167E-06	51741	160511_QHF_FH_JSI12i_2	101.3	86.142			1.0535	1.1501	23.62	8	4	Median	0.98498	0.86884	NaN	1	0	Median	0.67908	0.8148	18.415	3	2	Plateau	1.2898	1.308	17.972	2	1	Median	1.2193	1.3489	8.7294	2	1	Median	742720000	382070000	360650000	102470000	49225000	53241000	222840000	142000000	80840000	269200000	114940000	154260000	148220000	75912000	72303000	15681	4358	14870	95055;95056;95057;95058;95059;95060;95061;95062	128346;128347;128348;128349;128350;128351;128352;128353;128354;128355;128356;128357	128346			12	
FIAEEAAASGAK	1	Unmodified	1163.5823	0.58225287	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.5	6	5					1			4	3	3	2	28.568	27.075	2	2.0681E-08	24335	160511_QHF_FH_JSI12i_1	140.49	113.36			1.0786	1.113	77.969	12	10	Median	1.2606	1.0614	102.29	4	4	Median	0.52291	0.63535	105.63	3	3	Median	2.1598	2.1115	45.259	3	2	Median	0.91511	0.95538	37.132	2	1	Median	1372100000	705900000	666160000	358450000	191910000	166540000	484740000	240830000	243920000	304260000	152750000	151500000	224620000	120420000	104210000	15682	193	14871	95063;95064;95065;95066;95067;95068;95069;95070;95071;95072;95073;95074	128358;128359;128360;128361;128362;128363;128364;128365;128366;128367;128368;128369;128370;128371	128362			14	
FIAENSR	0	Unmodified	835.41882	0.41881635	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	10.515	10.02	2	0.046038	7571	160511_QHF_FH_JSI11i_2	44.395	21.375			0.95765	0.93276	16.214	4	0	Linear	1.6651	1.4223	NaN	1	0	Median	0.93186	1.1545	NaN	1	0	Median	0.9477	0.97088	NaN	1	0	Median	0.9677	1.0702	NaN	1	0	Median	384200000	189710000	194490000	65640000	27746000	37894000	79793000	45277000	34517000	137780000	62455000	75327000	100990000	54236000	46751000	15683	2952	14872	95075;95076;95077;95078	128372	128372			1	
FIAGTGCLVR	0	Unmodified	1092.575	0.57499942	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	44.765	44.167	2	0.0023185	38859	160511_QHF_FH_JSI11i_3	60.589	25.781			1.5848	1.8498	48.358	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5848	1.8498	NaN	1	0	Median	0.86632	0.82297	NaN	1	0	Median	1.8823	1.9502	NaN	1	0	Median	477220000	230650000	246570000	0	0	0	63134000	24988000	38146000	230160000	131520000	98648000	183920000	74146000	109770000	15684	23	14873	95079;95080;95081	128373;128374;128375;128376	128373			4	
FIAHVPVPSQQEIEEALVR	0	Unmodified	2161.1532	0.15315318	5408	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	2	3	91.413	90.986	3	1.2844E-09	80993	160511_QHF_FH_JSI11i_3	113.33	103.91			1.3442	1.4635	45.018	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0017	1.8905	NaN	1	0	Median	1.2147	1.299	45.466	3	3	Median	191160000	82596000	108560000	0	0	0	0	0	0	60234000	24168000	36066000	130920000	58428000	72495000	15685	5408	14874	95082;95083;95084;95085;95086;95087	128377;128378;128379;128380;128381;128382;128383	128377			7	
FIALANVGNPEK	1	Unmodified	1271.6874	0.68738664	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	55.753	54.824	2	6.1422E-06	46985	160511_QHF_FH_JSI12i_2	119.22	93.285			0.50415	0.61675	27.373	3	3	Median	NaN	NaN	NaN	0	0	Median	0.50415	0.61675	NaN	1	1	Median	0.4066	0.41645	NaN	1	1	Median	0.61727	0.70518	NaN	1	1	Median	208240000	137300000	70940000	0	0	0	44519000	30052000	14466000	96207000	61210000	34997000	67517000	46041000	21477000	15686	3032	14875	95088;95089;95090	128384;128385;128386	128384			3	
FIAMALFHGK	1	Unmodified	1133.6056	0.60557126	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	4	2	2	71.497	64.198	3	2.6116E-05	34805	160513_QHF_FH_JSI11Kac_6	93.649	86.521			0.80487	0.81713	102.74	10	10	Median	0.91561	0.79873	124.27	3	3	Plateau	0.34551	0.39732	95.511	3	3	Median	1.0443	0.97571	96.297	2	2	Median	2.2272	2.398	81.041	2	2	Median	324440000	164440000	160000000	76971000	36982000	39989000	93486000	55065000	38421000	110610000	58767000	51840000	43378000	13623000	29755000	15687	4133	14876	95091;95092;95093;95094;95095;95096;95097;95098;95099;95100;95101	128387;128388;128389;128390;128391;128392;128393;128394;128395;128396;128397;128398	128389			12	
FIAMALYHGK	1	Unmodified	1149.6005	0.60048589	121	O00308	WWP2	NEDD4-like E3 ubiquitin-protein ligase WWP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	58.868	49.44	3	0.00064178	26838	160513_QHF_FH_JSI11Kac_6	76.465	41.773			0.76795	0.62748	71.43	7	7	Median	1.2516	1.0344	70.697	2	2	Median	0.46589	0.53985	NaN	1	1	Median	0.92052	0.90013	66.335	2	2	Median	0.77101	0.82703	135.28	2	2	Median	101570000	53418000	48149000	32819000	13499000	19320000	16065000	11600000	4465100	40086000	21618000	18468000	12596000	6701000	5895300	15688	121	14877	95102;95103;95104;95105;95106;95107;95108	128399;128400;128401;128402;128403;128404;128405	128399			7	
FIASTGMDR	0	Unmodified	996.46987	0.46986564	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.4	2	4	1				1	4		3	3	4	2	29.642	25.235	2	2.7824E-06	21506	160511_QHF_FH_JSI11i_2	125.25	55.82			0.966	0.97032	25.436	12	1	Median	1.5472	0.8994	25.143	3	0	Plateau	0.86945	1.0741	25.525	3	0	Median	0.90424	0.88655	34.33	4	1	Median	0.93172	1.041	13.339	2	0	Median	2807400000	1461400000	1346000000	511890000	219570000	292320000	785910000	471470000	314440000	1008900000	521220000	487710000	500650000	249140000	251510000	15689	5426	14878	95109;95110;95111;95112;95113;95114;95115;95116;95117;95118;95119;95120	128406;128407;128408;128409;128410;128411;128412;128413;128414;128415;128416;128417;128418;128419	128415			14	
FIATLQYIVGR	0	Unmodified	1279.7289	0.72885752	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.2	6.46			4						5	2		3	4	82.672	77.575	2	5.5299E-18	39148	160513_QHF_FH_JSI12Kac_6	168.8	131.61			0.85727	0.85353	97.665	8	8	Median	1.0631	0.90599	143.97	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85756	0.80492	129.31	3	3	Median	0.31886	0.34474	75.752	3	3	Plateau	910850000	472310000	438540000	479390000	204840000	274550000	0	0	0	207720000	131500000	76219000	223730000	135960000	87774000	15690	1615	14879	95121;95122;95123;95124;95125;95126;95127;95128;95129	128420;128421;128422;128423;128424;128425;128426;128427;128428	128428			9	
FIAVGYVDDTQFVR	0	Unmodified	1628.8199	0.81985737	788;967;1352;1354	P10316;P01892;P01891;P30453;P30457;P30459;P16190;P10314;P18462;P30508;Q29960;P30510;P30504;Q95604	HLA-A;HLA-C	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-17 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.6	5	4	5					3	5	5	8	5	4	79.47	76.026	2	1.1371E-45	40418	160513_QHF_FH_JSI10Kac_6	199.08	164.54			0.96383	0.92811	24.526	21	8	Median	1.0598	0.90385	23.205	5	3	Median	0.89394	1.0485	37.279	7	5	Median	0.98501	0.91474	12.735	5	0	Median	0.89562	0.97155	9.3879	4	0	Median	3844800000	2002200000	1842500000	786710000	382920000	403780000	1314600000	758980000	555650000	1067200000	506900000	560350000	676190000	353440000	322760000	15691	967;788;1352;1354	14880	95130;95131;95132;95133;95134;95135;95136;95137;95138;95139;95140;95141;95142;95143;95144;95145;95146;95147;95148;95149;95150;95151	128429;128430;128431;128432;128433;128434;128435;128436;128437;128438;128439;128440;128441;128442;128443;128444;128445;128446;128447;128448;128449;128450;128451;128452;128453;128454;128455;128456;128457;128458;128459;128460;128461;128462;128463;128464;128465;128466;128467	128467			38	
FIAYQETVEK	1	Unmodified	1226.6183	0.61830402	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.75	0.433	1	3								2			2	40.111	38.958	2	0.0026029	35622	160511_QHF_FH_JSI12i_1	61.78	33.897			0.52551	0.43445	94.836	3	3	Plateau	0.8996	0.7627	87.925	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3855	2.6366	NaN	1	1	Median	74963000	36856000	38107000	54241000	28816000	25425000	0	0	0	0	0	0	20722000	8039400	12683000	15692	3274	14881	95152;95153;95154;95155	128468;128469;128470;128471	128469			4	
FIAYQFTDTPLQIK	1	Unmodified	1683.8872	0.88720866	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							2			1	89.154	88.473	2	6.274E-05	76393	160511_QHF_FH_JSI12i_2	152.07	86.722			0.10222	0.09958	96.419	2	2	Median	0.059199	0.050359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17649	0.19691	NaN	1	1	Median	273540000	240540000	33000000	143940000	127190000	16752000	0	0	0	0	0	0	129600000	113360000	16249000	15693	116	14882	95156;95157;95158	128472;128473;128474	128472			3	
FICEQDHQNFLR	0	Unmodified	1605.7358	0.73581017	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			41.784	40.818	3	2.2592E-06	35983	160511_QHF_FH_JSI10i_2	117.98	102.59			0.5672	0.69263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5672	0.69263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58289000	28928000	29361000	0	0	0	58289000	28928000	29361000	0	0	0	0	0	0	15694	3852	14883	95159	128475	128475			1	
FICHVVGITYQHIDR	0	Unmodified	1856.9356	0.93557261	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	3	5	1	4	59.609	50.459	2;3;4	1.3363E-53	27511	160513_QHF_FH_JSI11Kac_6	200.44	187.61			0.86793	0.78064	75.062	11	9	Median	1.1214	0.95277	35.828	2	1	Median	0.65499	0.77596	104.7	4	4	Median	0.8003	0.78064	NaN	1	0	Median	0.95181	1.0156	78.711	4	4	Median	1697100000	1073800000	623340000	216990000	68915000	148080000	1135200000	825840000	309350000	94437000	58959000	35478000	250470000	120040000	130430000	15695	5247	14884	95160;95161;95162;95163;95164;95165;95166;95167;95168;95169;95170;95171;95172	128476;128477;128478;128479;128480;128481;128482;128483;128484;128485;128486;128487;128488;128489;128490	128477			15	
FICTTSAIQNR	0	Unmodified	1309.6449	0.6448699	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.44	2	5	3					4	2	2	4	6	4	37.171	33.122	2	1.1637E-05	28233	160511_QHF_FH_JSI12i_2	131.5	97.415			1.1008	1.0666	52.528	16	11	Median	1.0616	0.87813	6.6348	2	1	Median	1.2733	1.5021	68.564	4	3	Median	0.74833	0.73769	31.92	6	4	Median	1.2391	1.3511	51.255	4	3	Median	2085800000	1045200000	1040600000	147850000	73586000	74259000	610410000	341680000	268730000	765740000	436470000	329270000	561850000	193490000	368360000	15696	1798	14885	95173;95174;95175;95176;95177;95178;95179;95180;95181;95182;95183;95184;95185;95186;95187;95188	128491;128492;128493;128494;128495;128496;128497;128498;128499;128500;128501;128502;128503;128504;128505	128493			15	
FIDFFKR	1	Acetyl (K)	1013.5335	0.53345218	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	79.113	69.734	2	2.9648E-06	38234	160513_QHF_FH_JSI11Kac_6	134.66	108.84			0.42389	0.43187	76.607	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26285	0.25124	NaN	1	0	Median	0.68359	0.74234	NaN	1	0	Median	98244000	78720000	19524000	0	0	0	0	0	0	82144000	68540000	13604000	16100000	10180000	5920200	15697	1664	14886	95189;95190	128506	128506	1690		1	
FIDGEMIEGK	1	Unmodified	1137.5376	0.53761086	3747	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.2	0.4	4	1								3	1		1	48.792	47.875	2	0.00045126	43181	160511_QHF_FH_JSI10i_1	74.173	49.354			1.6868	1.3641	68.085	5	4	Median	1.7988	1.5363	62.511	3	3	Plateau	1.15	1.3461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.269	3.3419	NaN	1	1	Median	323350000	135010000	188340000	160990000	68723000	92267000	92446000	44165000	48281000	0	0	0	69919000	22122000	47797000	15698	3747	14887	95191;95192;95193;95194;95195	128507;128508;128509;128510;128511;128512	128509			6	
FIDPLAK	1	Unmodified	802.45889	0.45889025	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				49.781	48.727	2	0.020299	42587	160511_QHF_FH_JSI9i_2	60.788	19.286			2.2686	1.9052	NaN	1	1	Median	2.2686	1.9052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219020000	86190000	132830000	219020000	86190000	132830000	0	0	0	0	0	0	0	0	0	15699	1409	14888	95196	128513	128513			1	
FIDTGFTLPFYK	1	Unmodified	1447.7388	0.73875351	121	O00308	WWP2	NEDD4-like E3 ubiquitin-protein ligase WWP2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			100.21	100.14	2	0.012654	88616	160511_QHF_FH_JSI10i_2	54.608	25.881			0.10067	0.12942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10067	0.12942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12881000	12159000	722510	0	0	0	12881000	12159000	722510	0	0	0	0	0	0	15700	121	14889	95197	128514	128514			1	
FIDTSQFILNR	0	Unmodified	1352.7089	0.70885036	397	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.3	6.6		1							2	1		1	1	76.608	70.205	2	4.5465E-08	62897	160511_QHF_FH_JSI12i_2	126.31	115.16			1.0801	1.2462	59.441	3	1	Median	2.8352	2.3777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74057	0.72531	NaN	1	0	Median	1.0801	1.2462	NaN	1	0	Median	175050000	74622000	100430000	16831000	4629100	12202000	0	0	0	23852000	13685000	10167000	134370000	56308000	78061000	15701	397	14890	95198;95199;95200	128515;128516;128517;128518	128516			4	
FIDTSQFILNRLEQTQK	1	Unmodified	2080.0953	0.095303954	397	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			86.901	85.732	3	0.01393	71719	160511_QHF_FH_JSI10i_3	43.791	34.211			0.73098	0.7094	74.662	2	2	Median	0.51578	0.41841	NaN	1	1	Median	1.036	1.2027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106090000	72672000	33417000	63252000	43267000	19985000	42836000	29405000	13431000	0	0	0	0	0	0	15702	397	14891	95201;95202	128519;128520	128519			2	
FIDTTLAITSR	0	Unmodified	1236.6714	0.67140222	5662	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.343	59.838	2	0.0094029	52039	160511_QHF_FH_JSI11i_2	58.37	29.643			0.80436	0.81602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80436	0.81602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89469000	46069000	43399000	0	0	0	0	0	0	89469000	46069000	43399000	0	0	0	15703	5662	14892	95203	128521	128521			1	
FIDTTSK	1	Unmodified	810.41233	0.41233399	1484	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.58	4	3	2			1	1			4	4	2	1	13.702	10.776	2	0.0068313	5473	160513_QHF_FH_JSI9Kac_3	90.777	64.95			2.6916	2.7934	106.09	11	10	Median	2.4807	2.0523	52.016	4	3	Median	3.2345	3.8701	109.94	4	4	Median	1.7574	1.7112	145.8	2	2	Median	0.23039	0.2444	NaN	1	1	Median	14040000000	6856100000	7183600000	1678500000	514980000	1163500000	3526600000	2056700000	1469900000	6304700000	2449000000	3855700000	2529900000	1835400000	694550000	15704	1484	14893	95204;95205;95206;95207;95208;95209;95210;95211;95212;95213;95214	128522;128523;128524;128525;128526;128527;128528;128529;128530;128531;128532	128528			11	
FIDTTSKFGHGR	1	Acetyl (K)	1406.6943	0.69426293	1484	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.9	0.35								1	6		2	3	2	47.51	38.02	2;3	4.653E-40	20694	160513_QHF_FH_JSI11Kac_6	194.96	176.34			0.29211	0.28224	91.999	6	0	Median	NaN	NaN	NaN	0	0	Median	1.3895	1.6495	2.8327	2	0	Median	0.28583	0.28014	2.1974	3	0	Median	0.25852	0.27472	NaN	1	0	Median	758800000	521980000	236830000	0	0	0	186580000	86455000	100120000	501410000	384630000	116770000	70818000	50888000	19930000	15705	1484	14894	95215;95216;95217;95218;95219;95220;95221	128533;128534;128535;128536;128537;128538;128539;128540;128541;128542;128543	128535	1488		11	
FIEAAQR	0	Unmodified	833.43955	0.43955179	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			13.816	13.225	2	0.057163	10804	160511_QHF_FH_JSI10i_2	46.37	26.449			0.85776	1.0423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85776	1.0423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254970000	159790000	95179000	0	0	0	254970000	159790000	95179000	0	0	0	0	0	0	15706	4411	14895	95222	128544	128544			1	
FIEAEQVPELEAVLHLVIASSDTR	0	Unmodified	2665.3963	0.39629658	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.325	92.605	3	1.0442E-33	54131	160513_QHF_FH_JSI10Kac_6	152.99	123.86			0.70541	0.83146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70541	0.83146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	200790000	119820000	80970000	0	0	0	200790000	119820000	80970000	0	0	0	0	0	0	15707	2997	14896	95223	128545	128545			1	
FIEAGQYNNHLYGTSVQSVR	0	Unmodified	2282.108	0.10799391	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	52.581	51.826	3	1.3604E-14	45747	160511_QHF_FH_JSI10i_2	141.08	122.05			1.0792	1.0067	34.836	6	5	Median	1.1819	1.0028	NaN	1	1	Median	0.95754	1.1725	75.573	2	2	Median	1.0354	0.97404	NaN	1	1	Median	1.0181	1.0672	7.6994	2	1	Median	383010000	196970000	186040000	66942000	24162000	42780000	124100000	64442000	59660000	76562000	36273000	40289000	115400000	72097000	43307000	15708	2330	14897	95224;95225;95226;95227;95228;95229	128546;128547;128548;128549;128550;128551;128552	128551			7	
FIEDELQIPVK	1	Unmodified	1329.718	0.71801807	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.602	73.1	2	4.0343E-07	66496	160511_QHF_FH_JSI12i_1	117.7	96.828			1.0561	1.1147	10.788	4	0	Linear	1.0726	0.87552	NaN	1	0	Median	0.92684	1.0909	NaN	1	0	Median	1.1177	1.098	NaN	1	0	Median	1.0399	1.0654	NaN	1	0	Median	714920000	366080000	348830000	102800000	48124000	54675000	214630000	115560000	99076000	223660000	107120000	116550000	173820000	95288000	78535000	15709	1356	14898	95230;95231;95232;95233	128553;128554;128555;128556;128557;128558	128554			6	
FIEDLNMYEASK	1	Unmodified	1458.6701	0.67008159	5284	Q9UGP4	LIMD1	LIM domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.299	61.648	2	0.010322	56119	160511_QHF_FH_JSI12i_1	57.149	42.458			1.0382	1.0451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0382	1.0451	NaN	1	1	Median	17510000	6243500	11266000	0	0	0	0	0	0	0	0	0	17510000	6243500	11266000	15710	5284	14899	95234	128559	128559			1	
FIEEHATK	1	Unmodified	973.4869	0.48689592	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.13		14	8					3		6	6	7	6	10.167	8.6535	2;3	0.00038871	6783	160511_QHF_FH_JSI11i_2	98.033	68.56			1.2012	1.008	105.73	25	22	Median	1.0187	0.86185	112.48	6	4	Median	0.73821	0.87687	103.16	6	6	Median	0.98775	0.93496	112.88	7	6	Median	1.9448	2.0657	110.42	6	6	Median	9345800000	5095100000	4250600000	1338900000	733740000	605200000	2823200000	1769900000	1053300000	3218400000	1686400000	1532000000	1965200000	905060000	1060200000	15711	1034	14900	95235;95236;95237;95238;95239;95240;95241;95242;95243;95244;95245;95246;95247;95248;95249;95250;95251;95252;95253;95254;95255;95256;95257;95258;95259	128560;128561;128562;128563;128564;128565;128566;128567;128568;128569;128570;128571;128572;128573;128574;128575;128576;128577;128578;128579;128580;128581;128582;128583;128584;128585;128586	128577			27	
FIEFEDSQEQEK	1	Unmodified	1527.6729	0.67291837	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	42.957	42.302	2	3.5851E-06	38461	160511_QHF_FH_JSI12i_1	121.9	99.813			1.2592	1.1355	64.51	8	8	Median	1.0628	0.8606	85.517	2	2	Median	1.1114	1.312	96.241	2	2	Median	1.2592	1.2319	57.835	2	2	Median	1.1134	1.1633	84.354	2	2	Median	626410000	296670000	329740000	100420000	47548000	52868000	147630000	72963000	74668000	174360000	82257000	92100000	204010000	93905000	110100000	15712	404	14901	95260;95261;95262;95263;95264;95265;95266;95267	128587;128588;128589;128590;128591;128592;128593;128594	128590			8	
FIEIAAR	0	Unmodified	818.46504	0.46503826	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.64	3	6	7					3	2	6	7	5	3	37.96	35.021	2	6.4031E-17	18309	160513_QHF_FH_JSI12Kac_5	164.1	89.27			0.91921	0.86681	127.93	21	14	Median	1.0527	0.88933	96.759	6	4	Median	0.91921	1.0993	189.85	7	5	Median	0.54086	0.52355	106.39	5	4	Median	0.37836	0.41691	85.235	3	1	Median	9132300000	5122700000	4009600000	2495800000	1271500000	1224300000	2308700000	1516500000	792180000	2594900000	1391900000	1203000000	1732900000	942820000	790080000	15713	2161	14902	95268;95269;95270;95271;95272;95273;95274;95275;95276;95277;95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288	128595;128596;128597;128598;128599;128600;128601;128602;128603;128604;128605;128606;128607;128608;128609;128610;128611;128612;128613;128614;128615;128616;128617;128618;128619;128620;128621;128622;128623	128615			29	
FIEIAARK	1	Unmodified	946.56	0.56000128	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	25.367	24.699	2;3	0.0061508	20448	160511_QHF_FH_JSI12i_3	50.607	17.766			0.77558	0.80473	182.68	4	4	Median	9.9301	7.886	NaN	1	1	Median	2.5502	2.936	NaN	1	1	Median	0.23588	0.22056	NaN	1	1	Median	0.21279	0.21906	NaN	1	1	Median	258080000	151760000	106320000	29977000	5193000	24784000	113330000	51875000	61451000	49972000	41252000	8719600	64804000	53444000	11360000	15714	2161	14903	95289;95290;95291;95292;95293	128624;128625;128626;128627;128628	128628			5	
FIESAHTELAK	1	Unmodified	1244.6401	0.6401021	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	26.769	25.493	3	0.043166	21310	160511_QHF_FH_JSI12i_2	27.862	20.66			0.66651	0.76529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66651	0.76529	NaN	1	1	Median	54015000	34146000	19869000	0	0	0	0	0	0	0	0	0	54015000	34146000	19869000	15715	3869	14904	95294	128629	128629			1	
FIFDCVSQEYGINPER	0	Unmodified	1972.8989	0.89891233	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	83.461	82.646	2	6.9993E-30	72777	160511_QHF_FH_JSI11i_2	186.17	170.41			0.79414	0.84876	23.234	5	4	Median	NaN	NaN	NaN	0	0	Median	0.73772	0.90788	28.611	2	2	Median	0.79414	0.78442	NaN	1	0	Median	0.95507	1.037	28.324	2	2	Median	119510000	66693000	52814000	0	0	0	39016000	20200000	18816000	33098000	19527000	13571000	47392000	26966000	20426000	15716	23	14905	95295;95296;95297;95298;95299	128630;128631;128632;128633;128634;128635;128636	128634			7	
FIFLTTAVTNSAR	0	Unmodified	1439.7773	0.77726428	4666	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		80.228	72.921	2	0.00031718	40536	160513_QHF_FH_JSI10Kac_6	93.258	66.143			1.2988	1.3904	44.986	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87432	1.0116	NaN	1	1	Median	1.9293	1.9111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131670000	71202000	60466000	8980500	0	8980500	106830000	66334000	40497000	15856000	4868000	10988000	0	0	0	15717	4666	14906	95300;95301;95302;95303;95304	128637;128638;128639;128640;128641	128640			5	
FIFNGEFK	1	Unmodified	1000.5018	0.5018177	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS				2	0		2								2				62.912	61.966	2	0.0096523	54552	160511_QHF_FH_JSI9i_2	64.207	48.575			2.0675	1.7735	110.59	2	2	Median	2.0675	1.7735	110.59	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97033000	29831000	67202000	97033000	29831000	67202000	0	0	0	0	0	0	0	0	0	15718	2456	14907	95305;95306	128642;128643	128643			2	
FIFNYVYHPK	1	Unmodified	1326.6761	0.67609367	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	3	2	3	2	68.699	62.429	2;3	2.7501E-13	34177	160513_QHF_FH_JSI10Kac_6	160.75	146.08			1.1813	1.0809	23.799	10	0	Median	1.2636	1.0788	37.19	3	0	Median	0.92951	1.1158	7.6717	2	0	Median	1.1517	1.0831	18.13	3	0	Median	1.1944	1.2399	28.239	2	0	Median	1809400000	841030000	968370000	348780000	134600000	214180000	628190000	353430000	274770000	447790000	175330000	272460000	384650000	177680000	206970000	15719	2606	14908	95307;95308;95309;95310;95311;95312;95313;95314;95315;95316	128644;128645;128646;128647;128648;128649;128650;128651;128652;128653;128654;128655;128656;128657;128658;128659	128659			15	
FIFTLVGGHISPLLVACEK	1	Unmodified	2100.1442	0.1441684	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	92.108	82.91	3	1.8976E-16	46607	160513_QHF_FH_JSI11Kac_6	180.05	150.71			4.8945	4.7651	39.427	3	3	Plateau	2.5376	2.1659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.9878	4.7651	NaN	1	1	Median	2.9957	3.1886	NaN	1	1	Median	136610000	30724000	105890000	25285000	6670100	18615000	0	0	0	65615000	6645300	58970000	45709000	17409000	28300000	15720	10	14909	95317;95318;95319	128660;128661;128662	128660			3	
FIFVGTLK	1	Unmodified	923.54804	0.54803961	3046	Q6GQQ9	OTUD7B	OTU domain-containing protein 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	75.853	67.214	2	0.0053074	35872	160513_QHF_FH_JSI9Kac_6	83.753	48.647			3.0055	2.971	88.798	5	5	Median	2.5679	2.1887	NaN	1	1	Median	3.2674	3.9438	NaN	1	1	Median	1.1811	1.1655	132.33	2	2	Median	3.3128	3.6682	NaN	1	1	Median	130170000	54637000	75531000	26882000	9043800	17838000	20441000	6251500	14189000	72474000	36055000	36420000	10371000	3287000	7083700	15721	3046	14910	95320;95321;95322;95323;95324	128663;128664;128665;128666;128667	128665			5	
FIGEGAR	0	Unmodified	748.38679	0.38678794	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	12.279	11.875	2	0.017438	9251	160511_QHF_FH_JSI12i_2	61.494	61.494			0.93903	0.95191	19.487	5	0	Median	1.0301	0.87512	NaN	1	0	Median	0.93903	1.1561	NaN	1	0	Median	0.8789	0.90112	NaN	1	0	Median	1.0763	1.1487	26.573	2	0	Median	1590100000	783150000	806930000	247770000	106920000	140850000	334890000	162350000	172540000	525950000	261620000	264330000	481470000	252260000	229210000	15722	1984	14911	95325;95326;95327;95328;95329	128668;128669;128670;128671;128672;128673;128674	128669			7	
FIGELFK	1	Unmodified	852.47454	0.47454032	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							2	2		1	63.846	62.514	2	0.014353	51224	160511_QHF_FH_JSI9i_3	66.993	17.403			0.19666	0.22951	177.08	5	5	Median	1.062	0.86179	251.95	2	2	Median	0.75416	0.9137	195.38	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14115	0.15845	NaN	1	1	Median	889230000	518020000	371210000	176400000	89497000	86901000	365430000	154890000	210550000	0	0	0	347400000	273640000	73761000	15723	334;2217	14912	95330;95331;95332;95333;95334	128675;128676;128677;128678;128679	128677			5	
FIGELFKLK	2	Acetyl (K)	1135.6641	0.664132	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	1	0	0	1			By MS/MS		16	0									1			1		85.239	75.919	2	0.035415	42081	160513_QHF_FH_JSI11Kac_6	56.434	34.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14865000	14865000	0	0	0	0	0	0	0	14865000	14865000	0	0	0	0	15724	334;2217	14913	95335	128680	128680			1	
FIGMKSR	1	Acetyl (K)	879.46366	0.46365805	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		37.328	28.31	2	0.033873	15944	160513_QHF_FH_JSI10Kac_6	67.903	27.7			0.54705	0.57317	140.91	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3146	1.5525	NaN	1	0	Median	0.22765	0.21162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84366000	57099000	27267000	0	0	0	30265000	13597000	16668000	54101000	43502000	10599000	0	0	0	15725	779	14914	95336;95337	128681	128681			1	
FIGPSPEVVRK	1	Unmodified	1227.6976	0.69755739	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							4	3	2	1	36.558	35.668	2;3	0.00012172	31212	160511_QHF_FH_JSI11i_3	55.98	50.26			0.90945	0.91728	19.734	9	0	Median	1.4121	1.1296	23.378	3	0	Median	0.90255	1.0569	9.1656	3	0	Median	0.84861	0.78696	8.6631	2	0	Median	0.90945	0.91728	NaN	1	0	Median	1301600000	678070000	623540000	335860000	143370000	192480000	411270000	207900000	203370000	390640000	229240000	161400000	163840000	97562000	66281000	15726	1002	14915	95338;95339;95340;95341;95342;95343;95344;95345;95346;95347	128682;128683;128684;128685;128686;128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700	128684			19	
FIGSPPGYVGHEEGGQLTK	1	Unmodified	1971.969	0.96904081	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	47.626	46.931	3	6.1218E-11	41435	160511_QHF_FH_JSI11i_3	130.11	108.27			1.0156	1.0323	24.996	6	0	Median	1.2318	1.0504	NaN	1	0	Median	0.83743	1.0145	NaN	1	0	Median	1.0317	1.0184	36.895	2	0	Median	1.0517	1.1104	40.869	2	0	Median	1234500000	635080000	599450000	173490000	85758000	87736000	227970000	133380000	94595000	462590000	233920000	228670000	370460000	182020000	188440000	15727	4620	14916	95348;95349;95350;95351;95352;95353	128701;128702;128703;128704;128705;128706;128707;128708;128709	128701			9	
FIHDQTSPNPK	1	Unmodified	1282.6306	0.63060004	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.51		12	4						4	4	5	6	5	14.059	12.064	2;3	3.9621E-06	9577	160511_QHF_FH_JSI12i_3	116.52	86.351			1.6993	1.9194	106.45	18	18	Median	2.211	1.8881	106.59	4	4	Median	1.6553	2.0015	118.12	5	5	Median	1.7513	1.7432	113.27	6	6	Median	1.6785	1.8407	137.78	3	3	Median	2404400000	1110200000	1294300000	561510000	296150000	265360000	502200000	220170000	282040000	724340000	255360000	468970000	616350000	338470000	277880000	15728	1792	14917	95354;95355;95356;95357;95358;95359;95360;95361;95362;95363;95364;95365;95366;95367;95368;95369;95370;95371;95372;95373	128710;128711;128712;128713;128714;128715;128716;128717;128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729	128728			20	
FIHDQTSPNPKYR	1	Acetyl (K)	1643.8056	0.80560429	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		34.789	26.007	2;3	0.00021865	14733	160513_QHF_FH_JSI10Kac_6	79.795	68.525			0.60161	0.63833	91.954	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0389	1.223	NaN	1	0	Median	0.3484	0.33317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71903000	45277000	26627000	0	0	0	24540000	10053000	14487000	47363000	35224000	12139000	0	0	0	15729	1792	14918	95374;95375;95376	128730;128731;128732;128733;128734	128732	1806		5	
FIHGKDVFEAFYK	2	Acetyl (K)	1641.8191	0.81912909	2456	Q13619	CUL4A	Cullin-4A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.653	72.339	3	0.0058713	39816	160513_QHF_FH_JSI11Kac_6	45.434	35.377			0.43172	0.42625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43172	0.42625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33599000	25624000	7974800	0	0	0	0	0	0	33599000	25624000	7974800	0	0	0	15730	2456	14919	95377	128735	128735	2485;2486		1	
FIHLMYHFAR	0	Unmodified	1333.6754	0.67538216	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	65.266	56.172	3;4	2.1851E-08	29968	160513_QHF_FH_JSI9Kac_6	102.61	92.557			0.96931	1.0544	71.147	8	3	Median	0.80426	0.68869	NaN	1	1	Median	0.5441	0.62257	38.018	3	1	Median	1.605	1.5784	60.306	2	0	Median	2.1161	2.2492	89.769	2	1	Median	268010000	137700000	130310000	27113000	14882000	12231000	176050000	101460000	74592000	33149000	10836000	22313000	31694000	10520000	21174000	15731	3271	14920	95378;95379;95380;95381;95382;95383;95384;95385	128736;128737;128738;128739;128740;128741;128742;128743;128744;128745;128746;128747	128738			12	
FIHLMYHFAR	0	Oxidation (M)	1349.6703	0.67029679	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	58.619	48.741	4	0.019852	25478	160513_QHF_FH_JSI12Kac_6	36.424	32.745			1.6031	1.7377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6031	1.7377	NaN	1	1	Median	8874400	3808400	5066000	0	0	0	0	0	0	0	0	0	8874400	3808400	5066000	15732	3271	14920	95386	128748	128748		2237	1	
FIHNSHDLTYFAYLIK	1	Unmodified	1981.0098	0.0097834104	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	82.109	74.159	3;4	0.00028189	41481	160513_QHF_FH_JSI10Kac_6	99.055	88.571			1.1947	1.1754	62.613	9	9	Median	1.6085	1.3794	63.212	2	2	Median	0.92226	1.0922	60.435	3	3	Median	2.2301	2.1742	86.986	2	2	Median	0.8938	0.96328	57.251	2	2	Median	635270000	322780000	312490000	207810000	80144000	127670000	328440000	199580000	128860000	44552000	18432000	26120000	54454000	24621000	29833000	15733	413	14921	95387;95388;95389;95390;95391;95392;95393;95394;95395	128749;128750;128751;128752;128753;128754;128755;128756;128757	128756			9	
FIHQQPQSSSPVYGSSAK	1	Unmodified	1946.9486	0.94863972	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							2	3	3	3	25.921	25.359	2;3	2.8076E-07	20945	160511_QHF_FH_JSI12i_3	97.214	75.341			0.91826	0.90439	182.62	8	8	Median	0.33655	0.29267	NaN	1	1	Median	3.9825	4.946	225.44	3	3	Median	1.2792	1.1983	298.18	2	2	Median	0.87245	0.90439	149.4	2	2	Median	694940000	338880000	356060000	73962000	31415000	42546000	100960000	40547000	60416000	268030000	120410000	147620000	251980000	146500000	105480000	15734	1640	14922	95396;95397;95398;95399;95400;95401;95402;95403;95404;95405;95406	128758;128759;128760;128761;128762;128763;128764;128765;128766;128767;128768;128769	128769			12	
FIHSCAK	1	Unmodified	861.41671	0.41670786	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	6.3139	6.2076	2;3	0.005627	4038	160511_QHF_FH_JSI11i_3	57.281	41.842			0.32603	0.30752	40.341	4	4	Median	NaN	NaN	NaN	0	0	Median	0.23109	0.27284	NaN	1	1	Median	0.32603	0.30752	5.806	2	2	Median	0.65348	0.65507	NaN	1	1	Median	596030000	389340000	206690000	0	0	0	26557000	17999000	8557900	418690000	274920000	143770000	150780000	96426000	54355000	15735	4048	14923	95407;95408;95409;95410	128770;128771;128772;128773	128771			4	
FIHVSHLNANIK	1	Unmodified	1391.7674	0.76736829	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.35			17						11	11	6	5	6	41.505	37.468	2;3;4	5.5754E-08	32235	160511_QHF_FH_JSI11i_3	99.439	93.597			1.4204	1.4907	104.6	25	17	Median	0.82557	0.67365	131.95	9	4	Median	1.5301	1.7714	90.784	5	4	Median	2.374	2.2978	108.68	5	4	Median	1.3886	1.4752	75.733	6	5	Median	2693900000	952180000	1741700000	580350000	219600000	360750000	302460000	142060000	160400000	200700000	50880000	149820000	1610400000	539640000	1070700000	15736	2767	14924	95411;95412;95413;95414;95415;95416;95417;95418;95419;95420;95421;95422;95423;95424;95425;95426;95427;95428;95429;95430;95431;95432;95433;95434;95435;95436;95437;95438	128774;128775;128776;128777;128778;128779;128780;128781;128782;128783;128784;128785;128786;128787;128788;128789;128790;128791;128792;128793;128794;128795;128796;128797;128798;128799;128800;128801	128774			27	
FIIDNTK	1	Unmodified	849.45962	0.45961853	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	39.286	38.484	2	0.0041464	36940	160511_QHF_FH_JSI10i_2	99.919	5.5122			0.67041	0.78848	90.299	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1624	1.4321	NaN	1	0	Median	0.5603	0.56881	128.14	2	1	Median	0.38666	0.44168	NaN	1	1	Median	882060000	411660000	470400000	0	0	0	278530000	139150000	139380000	538150000	240280000	297870000	65381000	32232000	33149000	15737	5495	14925	95439;95440;95441;95442	128802;128803;128804;128805;128806	128806			5	
FIIENTDLAVANSIR	0	Unmodified	1674.8941	0.89408495	1156	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	83.604	82.836	2	5.7252E-05	73022	160511_QHF_FH_JSI9i_2	116.01	81.479			1.4628	1.6689	23.51	3	3	Median	2.527	2.1921	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4231	1.3727	NaN	1	1	Median	1.4628	1.6689	NaN	1	1	Median	42067000	12107000	29960000	14664000	1886300	12778000	0	0	0	17348000	6595500	10753000	10054000	3625300	6429000	15738	1156	14926	95443;95444;95445;95446	128807;128808;128809;128810	128808			4	
FIIHAPPGEFNEVFNDVR	0	Unmodified	2100.0429	0.042874453	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.521	89.521	3	6.7383E-12	79945	160511_QHF_FH_JSI11i_3	108.49	96.846			1.0148	0.97365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0148	0.97365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	178460000	63630000	114830000	0	0	0	0	0	0	178460000	63630000	114830000	0	0	0	15739	1606	14927	95447	128811	128811			1	
FIIHNALSHCCLAGKVNEPQK	2	Unmodified	2435.2202	0.22020367	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		49.265	49.265	4	0.05268	43567	160511_QHF_FH_JSI11i_3	21.599	1.8771			2.1032	1.9657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1032	1.9657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49741000	8570200	41171000	0	0	0	0	0	0	49741000	8570200	41171000	0	0	0	15740	5195	14928	95448	128812	128812			1	
FIIIFEQIR	0	Unmodified	1177.6859	0.68593008	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.251	80.671	2	0.001293	44187	160513_QHF_FH_JSI9Kac_6	70.919	37.122			0.45524	0.49674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45524	0.49674	NaN	1	1	Median	52305000	50718000	1586600	0	0	0	37452000	37452000	0	0	0	0	14853000	13266000	1586600	15741	1439	14929	95449;95450;95451	128813;128814;128815	128813			3	
FIINSYPK	1	Unmodified	980.53312	0.53311783	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.237	49.256	2	0.00821	42180	160511_QHF_FH_JSI12i_2	57.177	39.792			1.0748	1.1547	6.1548	4	0	Median	1.2577	1.0778	NaN	1	0	Median	1.0267	1.2517	NaN	1	0	Median	1.1149	1.1453	NaN	1	0	Median	1.0361	1.1641	NaN	1	0	Median	419550000	217450000	202100000	55678000	29306000	26372000	90066000	52053000	38013000	157950000	82680000	75273000	115850000	53409000	62445000	15742	4064	14930	95452;95453;95454;95455	128816;128817;128818	128816			3	
FIIPNVVK	1	Unmodified	928.57459	0.57458871	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.63	5	4	4				2	4	4	5	6	7	5	73.739	69.114	2	0.00011188	60809	160511_QHF_FH_JSI11i_3	128.38	51.791			0.98168	0.9936	17.791	23	2	Median	1.2616	1.1287	12.433	5	1	Median	0.83495	0.98153	7.2612	6	0	Median	0.98168	0.98183	20.154	7	0	Median	1.1644	1.206	17.003	5	1	Median	42835000000	18572000000	24263000000	7751300000	2818300000	4933000000	9338700000	4644300000	4694400000	15485000000	6658800000	8825900000	10261000000	4450900000	5809700000	15743	761	14931	95456;95457;95458;95459;95460;95461;95462;95463;95464;95465;95466;95467;95468;95469;95470;95471;95472;95473;95474;95475;95476;95477;95478	128819;128820;128821;128822;128823;128824;128825;128826;128827;128828;128829;128830;128831;128832;128833;128834;128835;128836;128837;128838;128839;128840;128841;128842;128843;128844;128845;128846;128847;128848;128849;128850;128851;128852;128853;128854;128855;128856;128857;128858;128859;128860;128861;128862;128863;128864;128865;128866;128867;128868;128869;128870;128871;128872;128873;128874;128875;128876;128877;128878	128821			60	
FIIPNVVKYSPNCK	2	Unmodified	1677.8912	0.89124818	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			70.798	69.335	3	0.022536	58028	160511_QHF_FH_JSI10i_3	41.621	21.24			1.2308	1.4526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2308	1.4526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19300000	10705000	8595300	0	0	0	19300000	10705000	8595300	0	0	0	0	0	0	15744	761	14932	95479	128879	128879			1	
FIIPNVVKYSPNCK	2	Acetyl (K)	1719.9018	0.90181287	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4		1	3	1	83.41	74.573	2;3	1.2581E-23	40852	160513_QHF_FH_JSI11Kac_6	152.85	117.97			0.48516	0.49189	92.9	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9872	1.1782	NaN	1	0	Median	0.22542	0.2161	25.522	2	0	Median	0.87872	0.93475	NaN	1	0	Median	408790000	304260000	104530000	0	0	0	38978000	17181000	21797000	339620000	271930000	67688000	30192000	15144000	15048000	15745	761	14932	95480;95481;95482;95483;95484	128880;128881;128882;128883;128884;128885;128886	128881	367		7	
FIIPQIVK	1	Unmodified	956.60589	0.60588884	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.64	5	4	4				1	4	4	6	5	6	5	78.765	74.291	2	0.00017431	66588	160511_QHF_FH_JSI12i_3	122.78	122.78			1.0266	0.98782	11.089	21	0	Median	1.0715	0.90748	6.8868	5	0	Median	0.86347	0.97848	12.01	5	0	Median	1.0671	1.0554	5.3583	6	0	Median	1.008	1.0685	14.365	5	0	Median	45854000000	19201000000	26652000000	7696100000	3087200000	4608900000	10406000000	4638300000	5767700000	15728000000	6245100000	9483000000	12023000000	5230700000	6792600000	15746	864	14933	95485;95486;95487;95488;95489;95490;95491;95492;95493;95494;95495;95496;95497;95498;95499;95500;95501;95502;95503;95504;95505;95506	128887;128888;128889;128890;128891;128892;128893;128894;128895;128896;128897;128898;128899;128900;128901;128902;128903;128904;128905;128906;128907;128908;128909;128910;128911;128912;128913;128914;128915;128916;128917;128918;128919;128920;128921;128922;128923;128924;128925;128926;128927;128928;128929;128930;128931;128932;128933;128934;128935;128936;128937;128938;128939;128940;128941;128942;128943;128944;128945;128946;128947;128948;128949	128946			63	
FIIQSEKPPHYLESR	1	Unmodified	1842.9628	0.96283322	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			9							4	2	2	1	49.39	48.302	3;4	2.6707E-05	39802	160511_QHF_FH_JSI9i_3	101.42	91.082			0.94535	0.89839	24.492	9	1	Median	1.2882	1.052	33.973	4	1	Median	0.77225	0.90704	12.768	2	0	Median	0.8324	0.77909	20.149	2	0	Median	0.94535	0.97184	NaN	1	0	Median	947940000	499460000	448490000	348880000	166550000	182330000	255090000	146960000	108120000	302780000	170390000	132390000	41192000	15551000	25641000	15747	1060	14934	95507;95508;95509;95510;95511;95512;95513;95514;95515	128950;128951;128952;128953;128954;128955;128956;128957;128958;128959;128960;128961;128962;128963;128964;128965	128964			16	
FIITALPTIYHCK	1	Unmodified	1575.8483	0.84832073	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	3	2	5	81.464	79.188	2;3	1.0463E-10	67725	160511_QHF_FH_JSI10i_3	114.72	101.31			0.98317	0.94621	39.315	10	6	Median	1.0414	0.87398	4.9572	2	2	Median	0.70629	0.83713	26.906	2	2	Median	0.88217	0.8818	11.009	2	0	Median	1.47	1.5414	41.798	4	2	Median	578390000	245190000	333210000	38649000	18266000	20383000	68738000	36768000	31970000	214370000	103750000	110610000	256640000	86402000	170240000	15748	4698	14935	95516;95517;95518;95519;95520;95521;95522;95523;95524;95525;95526;95527;95528	128966;128967;128968;128969;128970;128971;128972;128973;128974;128975;128976;128977;128978;128979;128980;128981;128982;128983;128984	128972			19	
FIIVSAFDHFASVHSVSAEGTVVSNLSS	0	Unmodified	2906.445	0.44503769	5649	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				91.26	82.481	3	2.1561E-99	46154	160513_QHF_FH_JSI9Kac_6	221.83	206.15			1.3234	1.1067	NaN	1	0	Median	1.3234	1.1067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133860000	50728000	83128000	133860000	50728000	83128000	0	0	0	0	0	0	0	0	0	15749	5649	14936	95529	128985;128986	128985			2	
FIKAVTHQVK	2	Acetyl (K)	1211.7026	0.70264277	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		37.506	28.025	2	0.010321	15558	160513_QHF_FH_JSI11Kac_6	67.563	39.164			0.089301	0.093496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.089301	0.093496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1947600	1849800	97889	0	0	0	0	0	0	1947600	1849800	97889	0	0	0	15750	3754	14937	95530	128987	128987	2929;2930		1	
FIKDNWEELYNR	1	Acetyl (K)	1667.7944	0.79437091	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.837	69.522	2	3.4392E-25	38053	160513_QHF_FH_JSI11Kac_6	174.84	139.33			0.71301	0.71411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71301	0.71411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35187000	20207000	14980000	0	0	0	0	0	0	35187000	20207000	14980000	0	0	0	15751	1862	14938	95531	128988;128989	128988	1874		2	
FIKGTDYQLSK	2	Acetyl (K)	1340.6976	0.69761697	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			58.266	47.607	2	0.031002	26275	160513_QHF_FH_JSI10Kac_4	53.751	24.278			1.2505	1.4779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2505	1.4779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6438600	3209100	3229400	0	0	0	6438600	3209100	3229400	0	0	0	0	0	0	15752	1823	14939	95532	128990	128990			1	
FIKIIEVK	2	Acetyl (K)	1030.6427	0.64266828	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.747	66.112	2	0.045788	35116	160513_QHF_FH_JSI11Kac_5	56.81	35.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9931500	9931500	0	0	0	0	0	0	0	9931500	9931500	0	0	0	0	15753	1459	14940	95533	128991	128991			1	
FILAPAK	1	Unmodified	758.46906	0.46906101	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		42.483	41.654	2	0.014353	36658	160511_QHF_FH_JSI10i_2	66.994	22.383			1.355	1.3554	4.8393	3	3	Median	1.4633	1.2514	NaN	1	1	Median	1.1375	1.3655	NaN	1	1	Median	1.355	1.3554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	509770000	261040000	248730000	118590000	55246000	63348000	148210000	78131000	70081000	242960000	127660000	115300000	0	0	0	15754	1035	14941	95534;95535;95536	128992;128993;128994	128994			3	
FILIQAPK	1	Unmodified	928.57459	0.57458871	5829				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	6.4	5	2	1				2	3		4	3	3	3	75.826	70.693	2	0.002902	62055	160511_QHF_FH_JSI11i_1	76.592	17.386	+		0.93204	0.95028	10.908	11	1	Median	1.145	0.9247	14.814	3	1	Plateau	0.91021	1.0003	6.0267	3	0	Plateau	0.98082	0.98183	2.3078	3	0	Plateau	0.83705	0.90791	15.179	2	0	Median	20548000000	9564600000	10984000000	2212000000	842070000	1369900000	7263600000	3687700000	3575900000	11043000000	5019300000	6023600000	29739000	15546000	14194000	15755	5829	14942	95537;95538;95539;95540;95541;95542;95543;95544;95545;95546;95547;95548;95549	128995;128996;128997;128998;128999;129000;129001;129002;129003;129004;129005;129006;129007;129008;129009	128995			15	
FILIQNR	0	Unmodified	902.53379	0.53378653	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	3	3	1	2	50.734	45.416	2	4.2531E-09	38188	160511_QHF_FH_JSI10i_3	161.52	139.38			1.1355	1.0725	18.983	8	3	Median	1.2245	1.0702	8.1978	3	1	Median	0.98258	1.1489	15.583	3	1	Median	1.6269	1.6249	NaN	1	1	Median	0.89604	0.95966	NaN	1	0	Median	1046500000	540210000	506280000	425550000	192050000	233500000	565780000	321840000	243930000	37204000	16978000	20226000	17957000	9336700	8620000	15756	1809	14943	95550;95551;95552;95553;95554;95555;95556;95557;95558	129010;129011;129012;129013;129014;129015;129016;129017;129018;129019	129012			10	
FILLGYLDQLRK	1	Unmodified	1477.8657	0.86568536	5518	Q9Y2G8	DNAJC16	DnaJ homolog subfamily C member 16	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		88.436	79.106	3	1.678E-06	44167	160513_QHF_FH_JSI11Kac_6	107.09	70.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15757	5518	14944	95559	129020	129020			1	
FILLVSGFCPR	0	Unmodified	1307.706	0.70601359	3822	Q8WZ82	OVCA2	Ovarian cancer-associated gene 2 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.265	79.382	2	8.8794E-05	42171	160513_QHF_FH_JSI12Kac_6	98.009	66.075			1.041	1.1589	85.302	3	3	Plateau	0.32244	0.27216	NaN	1	1	Median	1.2549	1.4852	NaN	1	1	Median	0.57662	0.54573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	978050000	708280000	269770000	217610000	180170000	37441000	341840000	205570000	136270000	418600000	322540000	96060000	0	0	0	15758	3822	14945	95560;95561;95562;95563	129021;129022;129023;129024	129023			4	
FILLYQAR	0	Unmodified	1022.5913	0.59130141	2864	Q562E7	WDR81	WD repeat-containing protein 81	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			72.463	64.997	2	0.0017779	35727	160513_QHF_FH_JSI10Kac_6	96.048	50.33			0.76287	0.91452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76287	0.91452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65565000	34801000	30764000	0	0	0	65565000	34801000	30764000	0	0	0	0	0	0	15759	2864	14946	95564	129025	129025			1	
FILPEGASQGMTPFR	0	Unmodified	1649.8236	0.82356254	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.431	81.669	2	0.0013463	71882	160511_QHF_FH_JSI11i_2	64.55	39.696			0.81204	0.94075	20.089	4	1	Linear	0.9723	0.83942	NaN	1	0	Median	0.4763	0.58253	NaN	1	1	Median	0.93241	0.92965	NaN	1	0	Median	0.70721	0.78385	NaN	1	0	Median	124000000	71882000	52120000	30104000	11418000	18686000	32111000	21801000	10310000	33619000	20903000	12716000	28167000	17760000	10408000	15760	5458	14947	95565;95566;95567;95568	129026;129027;129028;129029	129028			4	
FILPNVSTPVSDAFK	1	Unmodified	1633.8716	0.87155859	5210	Q9P2D1	CHD7	Chromodomain-helicase-DNA-binding protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	95.851	95.377	2	0.00075066	82129	160511_QHF_FH_JSI12i_2	85.288	47.813			1.0252	1.0047	33.415	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0252	1.0047	NaN	1	1	Median	1.175	1.2206	44.505	2	2	Median	16560000	7741700	8818400	0	0	0	0	0	0	4410300	2816100	1594200	12150000	4925600	7224100	15761	5210	14948	95569;95570;95571	129030;129031;129032	129030			3	
FILPVNEGK	1	Unmodified	1015.5702	0.57023162	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	57.535	56.792	2	5.2624E-05	48625	160511_QHF_FH_JSI12i_2	116.73	88.213			1.0948	1.2058	46.758	6	1	Median	1.5464	1.2652	NaN	1	0	Median	1.0367	1.2311	NaN	1	0	Median	1.92	1.8709	77.388	2	0	Median	0.90638	0.98139	26.186	2	1	Median	674470000	329410000	345060000	15654000	6476300	9177900	55440000	27483000	27957000	265870000	87597000	178280000	337500000	207850000	129650000	15762	5569	14949	95572;95573;95574;95575;95576;95577	129033;129034	129033			1	
FILPVNEGKK	2	Unmodified	1143.6652	0.66519463	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	4	2	44.647	44.087	2;3	1.3473E-06	36977	160511_QHF_FH_JSI10i_3	92.538	49.821			0.95184	0.99834	28.289	9	3	Median	1.3754	1.1701	NaN	1	0	Median	0.88309	1.061	8.6116	2	0	Median	0.95509	0.92895	43.13	4	3	Median	0.95157	0.96995	4.6471	2	0	Median	1324900000	717510000	607430000	60446000	24424000	36022000	185130000	90082000	95044000	412310000	211280000	201040000	667060000	391730000	275330000	15763	5569	14950	95578;95579;95580;95581;95582;95583;95584;95585;95586	129035;129036;129037;129038;129039;129040;129041;129042;129043;129044;129045;129046;129047;129048	129037			14	
FILSCADDK	1	Unmodified	1067.4957	0.49574604	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.75	40.38	2	5.8284E-05	34514	160511_QHF_FH_JSI12i_2	99.442	80.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15764	1553	14951	95587	129049	129049			1	
FILSIAYSPDGK	1	Unmodified	1309.6918	0.69180331	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2		2	1	2	79.889	76.366	2	8.9397E-19	38027	160513_QHF_FH_JSI12Kac_6	148.32	96.975			1.2304	1.2772	24.969	5	0	Median	NaN	NaN	NaN	0	0	Median	0.92011	1.1084	47.532	2	0	Median	1.2304	1.2772	NaN	1	0	Median	1.1482	1.2588	4.8679	2	0	Median	471520000	246470000	225050000	0	0	0	260030000	157560000	102470000	91777000	36348000	55429000	119710000	52562000	67148000	15765	4605	14952	95588;95589;95590;95591;95592	129050;129051;129052	129051			3	
FILSLASCK	1	Unmodified	1037.558	0.55795237	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		73.101	63.718	2	0.024193	34592	160513_QHF_FH_JSI11Kac_6	59.35	20.558			1.2421	1.2019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2421	1.2019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8698900	4402900	4296100	0	0	0	0	0	0	8698900	4402900	4296100	0	0	0	15766	4623	14953	95593	129053	129053			1	
FIMESGAK	1	Unmodified	881.43169	0.43168922	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.7	5	8	5			1	2	3	1	7	7	6	5	27.435	24.466	2	0.00029814	21611	160511_QHF_FH_JSI10i_1	132.29	43.695			1.0581	1.0719	109.09	23	16	Median	1.2955	1.0719	90.156	5	4	Median	0.97117	1.1616	165.29	7	6	Median	0.91152	0.89282	71.192	6	3	Median	1.0873	1.182	67.643	5	3	Median	20271000000	10006000000	10265000000	3862300000	1925500000	1936800000	4314900000	1879000000	2435900000	7035000000	3343700000	3691300000	5058400000	2857400000	2201000000	15767	1227	14954	95594;95595;95596;95597;95598;95599;95600;95601;95602;95603;95604;95605;95606;95607;95608;95609;95610;95611;95612;95613;95614;95615;95616;95617;95618	129054;129055;129056;129057;129058;129059;129060;129061;129062;129063;129064;129065;129066;129067;129068;129069;129070;129071;129072;129073;129074;129075;129076;129077;129078;129079;129080;129081;129082;129083;129084;129085;129086;129087	129065			34	
FIMESGAK	1	Oxidation (M)	897.4266	0.42660385	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.81	1	6	1					3		1	4	4	2	21.141	17.724	2	0.00074403	20425	160511_QHF_FH_JSI11i_2	107.32	42.541			2.3308	2.2973	48.763	9	5	Median	3.1672	2.7182	NaN	1	0	Median	0.77415	0.94837	81.338	3	2	Plateau	3.2035	3.1339	37.158	3	2	Median	1.9696	2.1966	0.33653	2	1	Median	1278200000	517170000	760990000	366400000	145580000	220830000	366810000	161330000	205480000	204690000	54327000	150360000	340250000	155930000	184320000	15768	1227	14954	95619;95620;95621;95622;95623;95624;95625;95626;95627;95628;95629	129088;129089;129090;129091;129092;129093;129094;129095	129090		860	8	
FIMGDSSVQDQWK	1	Unmodified	1539.7028	0.70277871	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	3	2	63.15	62.364	2	1.3103E-11	54346	160511_QHF_FH_JSI11i_2	155	143.29			0.75864	0.76952	25.171	6	2	Median	0.84033	0.71296	NaN	1	0	Median	0.68488	0.83057	NaN	1	0	Median	0.75311	0.7377	34.989	2	1	Median	0.79857	0.88566	38.218	2	1	Median	333400000	160330000	173070000	66945000	30009000	36936000	55338000	33658000	21680000	121310000	49799000	71512000	89804000	46864000	42940000	15769	1133	14955	95630;95631;95632;95633;95634;95635;95636	129096;129097;129098;129099;129100;129101;129102;129103;129104;129105;129106;129107	129104			12	
FIMILTEHLVR	0	Unmodified	1370.7744	0.77442751	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	3	3	2	3	81.595	77.241	3	5.478E-19	39166	160513_QHF_FH_JSI9Kac_6	157.38	144.75			3.1198	3.5737	198.38	10	10	Median	1.8142	1.5265	213.45	2	2	Median	11.093	13.279	228.1	3	3	Plateau	2.5193	2.4288	359.88	2	2	Median	1.7917	1.9316	189.07	3	3	Median	337810000	78827000	258980000	84911000	11836000	73075000	153660000	13718000	139940000	45503000	18070000	27432000	53733000	35202000	18531000	15770	2284	14956	95637;95638;95639;95640;95641;95642;95643;95644;95645;95646;95647	129108;129109;129110;129111;129112;129113;129114;129115;129116;129117;129118	129114			11	
FIMILTEHLVR	0	Oxidation (M)	1386.7693	0.76934213	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			75.287	68.916	3	0.00087855	37504	160513_QHF_FH_JSI10Kac_6	70.488	56.525			0.17518	0.20824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17518	0.20824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28330000	24887000	3442700	0	0	0	28330000	24887000	3442700	0	0	0	0	0	0	15771	2284	14956	95648	129119	129119		1880	1	
FIMLHDIR	0	Unmodified	1043.5586	0.55862107	951	P0DI82;P0DI81	TRAPPC2B;TRAPPC2	Trafficking protein particle complex subunit 2B;Trafficking protein particle complex subunit 2	yes	no	0	0	0	0		By MS/MS	By MS/MS		6.67	6.6		2							1		1	2		49.967	49.226	3	0.0036343	42381	160511_QHF_FH_JSI11i_2	59.245	43.583			2.1919	2.1362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1919	2.1362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11559000	6785000	4774200	0	0	0	5476000	5476000	0	6083200	1309000	4774200	0	0	0	15772	951	14957	95649;95650;95651	129120;129121;129122	129121			3	
FINDQYEK	1	Unmodified	1055.4924	0.49237523	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3									2	2	3	22.481	21.93	2	0.0011163	18063	160511_QHF_FH_JSI12i_2	112.17	68.925			1.1713	1.1703	82.108	7	7	Median	NaN	NaN	NaN	0	0	Median	0.56268	0.6864	123.15	2	2	Median	0.62071	0.62572	88.546	2	2	Median	1.1713	1.2568	86.434	3	3	Median	1264800000	590480000	674300000	0	0	0	297760000	148490000	149270000	322740000	140340000	182400000	644270000	301650000	342620000	15773	5298	14958	95652;95653;95654;95655;95656;95657;95658	129123;129124;129125;129126;129127;129128;129129	129124			7	
FINEDRLPHLLLYGPPGTGK	1	Unmodified	2236.2004	0.20043773	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							1	3	2		81.396	80.626	3;4	9.2245E-05	68111	160511_QHF_FH_JSI10i_3	61.648	48.222			0.74395	0.88408	39.691	5	4	Median	0.7312	0.6	NaN	1	1	Median	0.76932	0.89417	1.6056	2	1	Median	1.0486	0.97273	68.35	2	2	Median	NaN	NaN	NaN	0	0	Median	213370000	100940000	112430000	20687000	10398000	10290000	37712000	18471000	19242000	154970000	72072000	82896000	0	0	0	15774	1505	14959	95659;95660;95661;95662;95663;95664	129130;129131;129132;129133;129134;129135	129134			6	
FINGSALNVQIIAALIK	1	Unmodified	1784.056	0.056005322	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0			By MS/MS		16	0									2			2		97.508	88.102	3	1.5795E-06	50282	160513_QHF_FH_JSI11Kac_6	108.34	89.741			0.8319	0.82686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8319	0.82686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37753000	14758000	22995000	0	0	0	0	0	0	37753000	14758000	22995000	0	0	0	15775	3921	14960	95665;95666	129136;129137	129137			2	
FINLQPSTLTDK	1	Unmodified	1375.7347	0.73473076	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.5	3	5	1				2	6		4	3	4	6	67.458	62.684	2	3.5851E-06	53876	160511_QHF_FH_JSI12i_2	121.9	93.5			1.1597	1.1191	54.017	15	13	Median	1.2456	1.032	54.767	4	3	Median	0.72436	0.85109	35.97	3	3	Median	1.1597	1.1342	48.645	3	3	Median	1.5442	1.7363	69.062	5	4	Median	1044200000	479270000	564900000	123800000	42716000	81082000	216570000	122800000	93772000	344040000	135260000	208780000	359760000	178490000	181270000	15776	3605	14961	95667;95668;95669;95670;95671;95672;95673;95674;95675;95676;95677;95678;95679;95680;95681;95682;95683	129138;129139;129140;129141;129142;129143;129144;129145;129146;129147;129148;129149;129150;129151;129152;129153;129154	129139			17	
FINMFAVLDELK	1	Unmodified	1438.753	0.75302336	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	102.57	102.49	2	1.4902E-16	90287	160511_QHF_FH_JSI11i_2	192.1	169.36			0.96804	1.0361	16.932	5	0	Median	1.1972	1.0269	NaN	1	0	Median	0.96804	1.1882	NaN	1	0	Median	0.89616	0.88296	22.619	2	0	Median	0.94772	1.0468	NaN	1	0	Median	752280000	376540000	375740000	85921000	38657000	47264000	131810000	66689000	65124000	314830000	160300000	154530000	219720000	110900000	108820000	15777	3229;4066	14962	95684;95685;95686;95687;95688;95689	129155;129156;129157;129158;129159;129160;129161;129162	129160			8	
FINNNAVTK	1	Unmodified	1019.54	0.53999412	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	1	2	2	18.678	17.898	2	0.00054208	14463	160511_QHF_FH_JSI12i_2	88.948	27.987			1.8205	1.5559	126.4	7	7	Median	0.61976	0.52147	154.6	2	2	Median	2.4135	2.9536	NaN	1	1	Median	0.80796	0.81704	174.51	2	2	Median	0.99649	1.1293	142.82	2	2	Median	426980000	218490000	208490000	72926000	28530000	44397000	31932000	7035200	24897000	219320000	128250000	91068000	102800000	54671000	48127000	15778	2453	14963	95690;95691;95692;95693;95694;95695;95696	129163;129164;129165;129166;129167;129168;129169	129163			7	
FINPAIVSPYEAGILDK	1	Unmodified	1845.9877	0.98765098	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		94.174	93.779	2	0.0051877	82377	160511_QHF_FH_JSI9i_2	51.774	29.241			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3608300	3608300	0	0	0	0	0	0	0	3608300	3608300	0	0	0	0	15779	1193	14964	95697;95698	129170;129171	129170			2	
FINPDWIALHTSR	0	Unmodified	1568.81	0.80996139	5705	Q9Y672	ALG6	Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	69.751	69.042	2;3	1.5628E-06	59582	160511_QHF_FH_JSI12i_3	125.84	107.7			1.1507	0.93406	68.039	5	3	Median	1.1507	0.93406	NaN	1	0	Median	0.73246	0.83428	NaN	1	0	Median	2.7592	2.6177	NaN	1	1	Median	0.88926	0.89652	95.566	2	2	Median	850070000	414540000	435530000	110900000	34475000	76425000	128190000	52185000	76010000	208980000	88748000	120240000	401990000	239130000	162860000	15780	5705	14965	95699;95700;95701;95702;95703;95704	129172;129173;129174;129175;129176;129177	129176			5	
FINQLLGVVPLSTPTEDK	1	Unmodified	1970.0724	0.072443247	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6									5	3	3	98.863	98.724	2;3	0.0001639	86537	160511_QHF_FH_JSI11i_2	72.446	67.444			0.30431	0.31904	114.19	10	10	Median	NaN	NaN	NaN	0	0	Median	0.60603	0.68748	110.1	4	4	Median	0.2781	0.26833	137.44	3	3	Median	0.13204	0.14479	130.16	3	3	Plateau	131810000	87291000	44518000	0	0	0	52642000	32436000	20206000	35177000	22857000	12320000	43990000	31999000	11991000	15781	2592	14966	95705;95706;95707;95708;95709;95710;95711;95712;95713;95714;95715	129178;129179;129180;129181;129182;129183;129184;129185;129186;129187;129188;129189	129186			12	
FINVPPQIALPMYQQLQK	1	Unmodified	2127.1551	0.15506744	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		101.05	100.98	3	4.1535E-06	88745	160511_QHF_FH_JSI9i_2	91.657	83.056			0.97663	1.0629	11.261	4	0	Median	1.3658	1.1572	NaN	1	0	Median	0.8017	0.96741	1.2848	2	0	Median	1.1651	1.191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	507050000	248920000	258140000	116920000	44510000	72409000	168430000	97705000	70724000	221700000	106700000	115000000	0	0	0	15782	5205	14967	95716;95717;95718;95719	129190;129191;129192	129190			3	
FINWFSHHLSNFQFR	0	Unmodified	1978.9591	0.95908524	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									20	7	4	5	4	82.157	73.801	2;3;4	5.8751E-72	41138	160513_QHF_FH_JSI10Kac_6	261.35	241.22			0.58244	0.5488	123.74	19	13	Median	0.50719	0.42889	89.031	7	5	Median	0.19369	0.2258	204.33	4	4	Median	1.6211	1.5375	140.13	4	2	Median	1.221	1.3061	72.644	4	2	Median	21148000000	10538000000	10610000000	5750500000	2903700000	2846800000	13097000000	6653400000	6443200000	1355800000	506270000	849530000	945190000	474700000	470500000	15783	2284	14968	95720;95721;95722;95723;95724;95725;95726;95727;95728;95729;95730;95731;95732;95733;95734;95735;95736;95737;95738;95739	129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204;129205;129206;129207;129208;129209;129210;129211;129212;129213;129214;129215;129216;129217	129212			25	
FINYVKNCFR	1	Acetyl (K)	1401.6863	0.68634078	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	72.306	62.961	2	1.1814E-13	34094	160513_QHF_FH_JSI11Kac_6	149.65	133.02			1.6137	1.8142	450.52	2	2	Median	NaN	NaN	NaN	0	0	Median	37.311	43.872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.069788	0.075016	NaN	1	1	Median	311820000	243390000	68422000	0	0	0	67849000	600330	67249000	216170000	216170000	0	27801000	26628000	1173200	15784	857	14969	95740;95741;95742;95743	129218;129219;129220;129221	129218	543		4	
FIPDPQGSNMMFAFFAQHFTHQFFK	1	Unmodified	3019.3938	0.39381094	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.174	88.755	4	6.1704E-95	48128	160513_QHF_FH_JSI12Kac_6	230.86	220.15			1.0522	0.97947	7.658	4	0	Median	1.1003	0.9341	NaN	1	0	Median	0.77277	0.91695	NaN	1	0	Median	1.0874	1.0271	NaN	1	0	Median	1.0181	1.0767	NaN	1	0	Median	2794800000	1378200000	1416700000	704060000	335870000	368190000	767550000	422270000	345280000	902260000	420720000	481540000	420970000	199310000	221660000	15785	1434	14970	95744;95745;95746;95747	129222;129223;129224;129225;129226;129227;129228;129229	129227			8	
FIPDPQGSNMMFAFFAQHFTHQFFK	1	Oxidation (M)	3035.3887	0.38872556	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	96.605	87.351	4	3.4165E-09	49806	160513_QHF_FH_JSI9Kac_6	128.52	115.12			1.0126	0.96072	7.1913	2	2	Median	1.0736	0.91309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95511	1.0108	NaN	1	1	Median	203850000	74008000	129840000	122920000	44454000	78468000	0	0	0	0	0	0	80925000	29554000	51371000	15786	1434	14970	95748;95749	129230;129231	129230		1090	2	
FIPEFIR	0	Unmodified	920.51199	0.51198846	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	68.898	68.182	2	0.0061201	59495	160511_QHF_FH_JSI11i_2	92.319	61.03			0.78134	0.87867	38.543	5	1	Median	1.0895	0.96016	NaN	1	0	Median	0.64818	0.78369	NaN	1	0	Median	1.2326	1.1965	67.282	2	1	Median	0.78134	0.87867	NaN	1	0	Median	225650000	132690000	92964000	33072000	17939000	15132000	42232000	28875000	13358000	120250000	66645000	53600000	30100000	19226000	10874000	15787	445	14971	95750;95751;95752;95753;95754	129232;129233;129234;129235;129236;129237;129238;129239;129240	129237			9	
FIPEFIRK	1	Unmodified	1048.607	0.60695147	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		54.361	54.361	3	0.00037703	48093	160511_QHF_FH_JSI11i_3	98.458	77.086			0.73408	0.6874	88.658	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73408	0.6874	88.658	2	2	Median	NaN	NaN	NaN	0	0	Median	641380000	369420000	271960000	0	0	0	0	0	0	641380000	369420000	271960000	0	0	0	15788	445	14972	95755;95756	129241;129242	129241			2	
FIPEGSQR	0	Unmodified	932.47158	0.4715802	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	17.49	16.548	2	0.003294	13514	160511_QHF_FH_JSI12i_2	79.597	27.909			1.7444	1.951	61.564	3	3	Median	0.84405	0.72483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8688	2.0912	9.8098	2	2	Median	548790000	142830000	405960000	86060000	40910000	45150000	0	0	0	0	0	0	462730000	101920000	360810000	15789	802	14973	95757;95758;95759	129243;129244;129245	129244			3	
FIPFIGVVK	1	Unmodified	1018.6215	0.62153891	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	90.74	90.184	2	0.0014694	78258	160511_QHF_FH_JSI12i_3	68.915	58.928			1.1922	1.1526	11.879	8	0	Median	1.3466	1.1441	7.643	2	0	Median	0.8898	1.0747	7.4318	2	0	Median	1.0687	1.0421	16.708	2	0	Median	1.2053	1.2778	10.407	2	0	Median	162740000	81257000	81479000	27807000	13114000	14692000	42866000	25098000	17768000	57496000	26955000	30542000	34567000	16090000	18477000	15790	3163	14974	95760;95761;95762;95763;95764;95765;95766;95767	129246;129247;129248;129249;129250;129251	129251			6	
FIPGKPVLETR	1	Unmodified	1255.7289	0.72885752	5425	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.537	42.937	3	0.019199	35180	160511_QHF_FH_JSI9i_3	36.679	27.246			0.96193	0.80059	NaN	1	0	Median	0.96193	0.80059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74145000	30978000	43166000	74145000	30978000	43166000	0	0	0	0	0	0	0	0	0	15791	5425	14975	95768	129252	129252			1	
FIPGSALNGMVEMMDR	0	Unmodified	1766.8154	0.8153824	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							2	3	2		99.086	98.966	2;3	3.0188E-05	87957	160511_QHF_FH_JSI11i_3	129.34	121.78			0.91604	0.94028	20.409	7	1	Median	0.91018	0.75432	33.123	2	1	Median	0.75063	0.86003	19.285	3	0	Median	1.0134	0.95572	2.3028	2	0	Median	NaN	NaN	NaN	0	0	Median	278930000	161890000	117040000	49195000	26299000	22896000	96285000	59005000	37279000	133450000	76585000	56866000	0	0	0	15792	4983	14976	95769;95770;95771;95772;95773;95774;95775	129253;129254;129255;129256;129257;129258;129259;129260;129261;129262	129254			10	
FIPHENGVHTIDVK	1	Unmodified	1604.8311	0.83109076	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	38.461	38.371	3;4	0.00070743	33639	160511_QHF_FH_JSI11i_3	55.98	44.003			1.0483	1.0419	24.029	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88005	0.83377	10.103	2	0	Median	1.2163	1.2462	3.8969	2	0	Median	701860000	286950000	414910000	0	0	0	0	0	0	339860000	167190000	172670000	362000000	119760000	242240000	15793	512	14977	95776;95777;95778;95779	129263;129264;129265	129263			1	
FIPHKDYTANR	1	Acetyl (K)	1402.6993	0.69934831	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.443	31.872	3	0.0014289	17482	160513_QHF_FH_JSI11Kac_6	60.49	45.346			0.33334	0.31786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33334	0.31786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17252000	13478000	3774400	0	0	0	0	0	0	17252000	13478000	3774400	0	0	0	15794	4416	14978	95780	129266	129266	3156		1	
FIPLAELK	1	Unmodified	929.5586	0.5586043	5174	Q9P016	THYN1	Thymocyte nuclear protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.783	73.925	2	0.021912	64818	160511_QHF_FH_JSI11i_2	44.447	4.9046			1.0695	1.1529	6.588	4	0	Median	1.286	1.1232	NaN	1	0	Median	1.052	1.2742	NaN	1	0	Median	1.0873	1.0986	NaN	1	0	Median	1.0497	1.1835	NaN	1	0	Median	332990000	159210000	173780000	57404000	24359000	33045000	73309000	34322000	38986000	133600000	63928000	69668000	68679000	36598000	32081000	15795	5174	14979	95781;95782;95783;95784	129267;129268;129269	129268			3	
FIPLARPEVK	1	Unmodified	1168.6968	0.69682911	5606	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				46.409	44.8	3	0.0039066	36689	160511_QHF_FH_JSI9i_3	48.284	19.326			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15796	5606	14980	95785	129270	129270			1	
FIPLSEPAPVPPIPNEQQLAR	0	Unmodified	2312.2529	0.25286723	4297	Q99627	COPS8	COP9 signalosome complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	10	6								4	4	4	4	92.898	92.467	2;3	3.4733E-15	82075	160511_QHF_FH_JSI9i_1	137.68	125.52			0.99627	1.0027	18.759	16	4	Median	1.1545	0.97553	11.468	4	2	Median	0.80463	0.94267	18.677	4	2	Median	0.92716	0.9216	27.377	4	0	Median	1.006	1.1058	13.791	4	0	Median	855260000	460100000	395170000	167080000	76412000	90671000	231840000	133010000	98832000	270150000	159370000	110780000	186190000	91307000	94884000	15797	4297	14981	95786;95787;95788;95789;95790;95791;95792;95793;95794;95795;95796;95797;95798;95799;95800;95801	129271;129272;129273;129274;129275;129276;129277;129278;129279;129280;129281;129282;129283;129284;129285;129286;129287;129288;129289;129290;129291;129292;129293;129294;129295;129296;129297;129298;129299;129300;129301;129302	129292			31	
FIPLYSK	1	Unmodified	866.49019	0.49019038	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	52.088	51.1	2	0.012945	44144	160511_QHF_FH_JSI11i_2	72.138	35.582			1.5063	1.2727	94.524	3	3	Median	1.5063	1.2727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49957	0.50047	NaN	1	1	Median	2.9099	3.3142	NaN	1	1	Median	224610000	100550000	124060000	53894000	21761000	32133000	0	0	0	105560000	52874000	52685000	65160000	25917000	39243000	15798	2567	14982	95802;95803;95804	129303;129304;129305	129305			3	
FIPPWLK	1	Unmodified	899.52691	0.52691024	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.569	75.795	2	0.013952	67647	160511_QHF_FH_JSI11i_3	66.994	10.483			0.90063	0.82413	9.4137	4	0	Median	0.94902	0.7577	NaN	1	0	Median	0.7473	0.84076	NaN	1	0	Median	0.86351	0.80783	NaN	1	0	Median	0.93934	0.94763	NaN	1	0	Median	230670000	114680000	115990000	48844000	20174000	28670000	31157000	19106000	12050000	66722000	29910000	36812000	83946000	45490000	38456000	15799	339	14983	95805;95806;95807;95808	129306;129307;129308;129309;129310;129311;129312;129313;129314;129315;129316;129317	129308			12	
FIPYTEEFSEK	1	Unmodified	1388.65	0.64999808	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	62.736	61.84	2	0.00059428	53027	160511_QHF_FH_JSI12i_2	84.17	57.055			1.0809	1.1645	59.972	5	5	Median	0.69753	0.59676	NaN	1	1	Median	0.57273	0.70348	90.638	2	2	Median	1.1744	1.1645	NaN	1	1	Median	1.346	1.5045	NaN	1	1	Median	637700000	372290000	265410000	89187000	54088000	35099000	214210000	147530000	66678000	211750000	95597000	116160000	122550000	75077000	47473000	15800	5755	14984	95809;95810;95811;95812;95813	129318;129319;129320;129321;129322;129323	129318			6	
FIQAWQSLPEFGITHFIAR	0	Unmodified	2260.1793	0.17930835	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	93.129	84.657	2;3	3.2535E-157	47415	160513_QHF_FH_JSI11Kac_6	284.67	255.86			0.95002	0.91561	30.614	9	2	Median	1.2496	1.082	31.103	2	0	Median	1.127	1.2992	49.487	2	0	Median	0.8034	0.76914	3.2369	2	0	Median	0.95002	1.003	23.978	3	2	Median	12616000000	6194300000	6421600000	2161300000	953930000	1207400000	4786600000	2155200000	2631400000	2982600000	1666200000	1316400000	2685400000	1418900000	1266500000	15801	3965	14985	95814;95815;95816;95817;95818;95819;95820;95821;95822	129324;129325;129326;129327;129328;129329;129330;129331;129332;129333;129334;129335;129336	129325			13	
FIQAWQSLPEFGLTYYLVR	0	Unmodified	2330.2099	0.20993978	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	97.618	89.738	3	7.8377E-08	48407	160513_QHF_FH_JSI12Kac_6	98.165	89.774			0.92639	0.83428	39.332	5	3	Median	0.92639	0.78804	NaN	1	1	Median	1.1146	1.3237	11.295	2	2	Median	0.88585	0.83428	NaN	1	0	Median	0.49975	0.52765	NaN	1	0	Median	916480000	447560000	468920000	145290000	59473000	85814000	505910000	233660000	272260000	136990000	65150000	71840000	128290000	89283000	39006000	15802	4363	14986	95823;95824;95825;95826;95827	129337;129338;129339;129340	129338			4	
FIQDHLKPSPQFQEQVK	2	Unmodified	2068.0742	0.074174581	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		44.587	44.587	3	1.5327E-06	39397	160511_QHF_FH_JSI11i_3	113.29	78.985			0.74099	0.69373	77.003	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74099	0.69373	77.003	2	2	Median	NaN	NaN	NaN	0	0	Median	87311000	47295000	40016000	0	0	0	0	0	0	87311000	47295000	40016000	0	0	0	15803	5734	14987	95828;95829	129341;129342;129343	129343			3	
FIQEIEHALGLGPAK	1	Unmodified	1621.8828	0.88279198	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	81.903	81.096	3	0.00022365	71797	160511_QHF_FH_JSI11i_2	79.652	72.281			3.0942	3.488	165.54	5	5	Median	NaN	NaN	NaN	0	0	Median	7.3493	9.0929	NaN	1	1	Median	0.80224	0.8184	236.11	2	2	Median	1.3212	1.4806	121.18	2	2	Median	152370000	66609000	85757000	15499000	15499000	0	22300000	1614800	20685000	56419000	23144000	33274000	58149000	26351000	31797000	15804	3962	14988	95830;95831;95832;95833;95834;95835	129344;129345;129346;129347;129348;129349	129348			6	
FIQENIFGICPHMTEDNK	1	Unmodified	2192.0031	0.0030598275	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.514	1	8	2							2	2	4	3	76.036	75.318	2;3	7.1513E-32	65267	160511_QHF_FH_JSI12i_2	193.22	184.61			0.87408	0.83003	78.199	9	7	Median	0.94441	0.8123	36.763	2	2	Median	0.85994	1.0666	70.224	2	2	Median	0.79034	0.82535	110.99	3	2	Median	1.2273	1.3385	5.9134	2	1	Median	2499200000	1277100000	1222100000	364360000	165610000	198750000	825960000	389970000	435990000	863700000	525560000	338140000	445160000	195970000	249180000	15805	1344	14989	95836;95837;95838;95839;95840;95841;95842;95843;95844;95845;95846	129350;129351;129352;129353;129354;129355;129356;129357;129358;129359;129360;129361;129362;129363;129364;129365;129366;129367;129368;129369;129370;129371;129372;129373;129374	129358			25	
FIQENVFVAANHNGSPLSIK	1	Unmodified	2184.1328	0.13275209	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.445	72.445	3	9.4086E-07	64617	160511_QHF_FH_JSI11i_3	99.092	83.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15136000	0	15136000	0	0	0	0	0	0	15136000	0	15136000	0	0	0	15806	989	14990	95847	129375	129375			1	
FIQFEPEEDIK	1	Unmodified	1393.6765	0.67654718	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			64.245	63.876	2	0.00043344	57756	160511_QHF_FH_JSI10i_1	87.258	76.094			0.67062	0.78512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67062	0.78512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27931000	18989000	8941300	0	0	0	27931000	18989000	8941300	0	0	0	0	0	0	15807	5013	14991	95848	129376	129376			1	
FIQGNQK	1	Unmodified	833.43955	0.43955179	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		7.1155	6.9193	2	0.037222	4607	160511_QHF_FH_JSI11i_2	50.025	39.84			5.0995	5.0929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0995	5.0929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45982000	11860000	34122000	0	0	0	0	0	0	45982000	11860000	34122000	0	0	0	15808	376	14992	95849	129377	129377			1	
FIQKYHMER	1	Acetyl (K)	1292.6336	0.63357693	5482	Q9UQR1;Q9Y2X9	ZNF148;ZNF281	Zinc finger protein 148;Zinc finger protein 281	yes	no	1	0	0	1			By MS/MS		16	0									1			1		40.172	30.628	3	0.024168	16916	160513_QHF_FH_JSI11Kac_6	43.282	32.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1736400	0	1736400	0	0	0	0	0	0	1736400	0	1736400	0	0	0	15809	5482	14993	95850	129378	129378	3446		1	
FIQLLSDQSDQSVLIQK	1	Unmodified	1961.047	0.046956778	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	83.241	82.77	2;3	5.2702E-17	75118	160511_QHF_FH_JSI10i_1	203.82	178.96			1.6641	1.4469	62.565	3	3	Median	1.21	1.0463	45.84	2	2	Median	2.3498	2.6437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148260000	51968000	96292000	50351000	21137000	29214000	63757000	30831000	32927000	16431000	0	16431000	17720000	0	17720000	15810	686	14994	95851;95852;95853;95854;95855;95856;95857;95858;95859	129379;129380;129381;129382;129383;129384;129385;129386;129387	129382			9	
FIQPNIGELPTALK	1	Unmodified	1539.8661	0.86607929	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								1	3	3	4	82.941	82.396	2	2.5379E-06	72415	160511_QHF_FH_JSI11i_2	127.42	115.22			1.1304	1.0699	17.441	8	4	Median	1.1703	1.0083	NaN	1	0	Median	0.94456	1.1449	26.597	2	1	Median	1.1014	1.0723	22.634	3	2	Median	1.0756	1.1474	10.204	2	1	Median	326330000	157890000	168450000	43331000	20187000	23145000	83977000	44132000	39845000	129390000	61598000	67789000	69636000	31969000	37666000	15811	2485	14995	95860;95861;95862;95863;95864;95865;95866;95867;95868;95869;95870	129388;129389;129390;129391;129392;129393;129394;129395;129396;129397;129398;129399;129400;129401;129402	129400			15	
FIQQTYPSGGEEQAQYCR	0	Unmodified	2160.9535	0.9534671	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	40.108	39.678	2	4.0252E-54	36065	160511_QHF_FH_JSI12i_1	225.23	210.54			0.8551	0.93405	30.328	4	2	Median	NaN	NaN	NaN	0	0	Median	0.8078	0.93405	7.3095	2	2	Median	0.84358	0.81527	NaN	1	0	Median	1.5552	1.6052	NaN	1	0	Median	156680000	73433000	83248000	0	0	0	69389000	35493000	33896000	40546000	21933000	18613000	46746000	16007000	30739000	15812	3766	14996	95871;95872;95873;95874	129403;129404;129405;129406;129407;129408;129409;129410	129408			8	
FIQSIPDNQLVR	0	Unmodified	1428.7725	0.77251325	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	1	3	2	59.483	58.7	2	0.00015561	50962	160511_QHF_FH_JSI11i_2	99.653	51.83			0.84077	0.74568	93.6	7	7	Median	0.84077	0.74568	NaN	1	1	Median	0.48418	0.54584	NaN	1	1	Median	1.2521	1.3343	98.166	3	3	Median	1.2823	1.3896	147.58	2	2	Median	154290000	80406000	73885000	15853000	11223000	4630000	13373000	8281100	5092300	88850000	40404000	48446000	36215000	20499000	15716000	15813	4765	14997	95875;95876;95877;95878;95879;95880;95881	129411;129412;129413;129414;129415;129416;129417	129417			7	
FIQTFGK	1	Unmodified	839.45414	0.45413923	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.77	3	9	5					1	4	5	6	7	4	35.454	32.476	2	0.001693	17805	160513_QHF_FH_JSI11Kac_6	100.07	66.516			3.9807	3.9458	155.56	16	16	Median	4.959	4.2091	182.1	4	4	Median	4.3351	5.0916	252.23	3	3	Median	3.6553	3.6081	142.9	5	5	Median	1.7236	1.8457	130.2	4	4	Median	3470100000	1416800000	2053300000	479250000	167370000	311880000	641420000	221740000	419670000	1422300000	605140000	817160000	927100000	422510000	504590000	15814	2094	14998	95882;95883;95884;95885;95886;95887;95888;95889;95890;95891;95892;95893;95894;95895;95896;95897;95898;95899;95900;95901;95902;95903	129418;129419;129420;129421;129422;129423;129424;129425;129426;129427;129428;129429;129430;129431;129432;129433;129434;129435;129436;129437;129438;129439	129426			22	
FIQTFGKEFDK	2	Acetyl (K)	1400.6976	0.69761697	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								4			1	2	1	74.218	63.583	2	2.9006E-07	31510	160513_QHF_FH_JSI12Kac_5	111.65	79.717			7.267	7.2203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.267	7.2203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27962000	19558000	8404400	0	0	0	4610600	4610600	0	20536000	12132000	8404400	2815600	2815600	0	15815	2094	14999	95904;95905;95906;95907	129440;129441;129442;129443	129442	2187;2191		4	
FIQVHPITK	1	Unmodified	1081.6284	0.6284152	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	3	1	4	1	36.315	33.072	2;3	0.00049206	28857	160511_QHF_FH_JSI11i_3	89.698	43.328			1.0772	1.0963	106.4	9	8	Median	3.266	2.6575	87.796	3	2	Plateau	0.27684	0.32822	NaN	1	1	Median	0.67422	0.64475	116.73	4	4	Median	3.4965	3.5393	NaN	1	1	Median	849950000	360260000	489690000	48791000	11912000	36879000	3565900	3063000	502910	620360000	291650000	328710000	177230000	53633000	123590000	15816	4996	15000	95908;95909;95910;95911;95912;95913;95914;95915;95916	129444;129445;129446;129447;129448;129449;129450;129451;129452	129445			9	
FIQWNIHK	1	Unmodified	1084.5818	0.58179936	18	A4D1P6	WDR91	WD repeat-containing protein 91	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	45.052	44.155	3	0.025587	37077	160511_QHF_FH_JSI10i_3	22.781	13.423			0.90797	0.98114	25.124	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0412	1.1719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79176	0.82144	NaN	1	0	Median	80413000	46960000	33452000	0	0	0	40484000	21703000	18781000	0	0	0	39929000	25257000	14671000	15817	18	15001	95917;95918	129453;129454	129453			2	
FIQYLASR	0	Unmodified	996.53927	0.53926584	2425	Q13492;O60641	PICALM;SNAP91	Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180	yes	no	0	0	0	0	By MS/MS				2	0		1								1				43.406	42.355	2	0.0029113	37091	160511_QHF_FH_JSI9i_2	75.109	24.143			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15818	2425	15002	95919	129455	129455			1	
FIREPSLK	1	Unmodified	988.57057	0.57056597	4730	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				28.613	27.233	3	0.011019	22352	160511_QHF_FH_JSI9i_3	43.083	15.829			2.7642	2.2735	NaN	1	1	Median	2.7642	2.2735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28800000	10475000	18325000	28800000	10475000	18325000	0	0	0	0	0	0	0	0	0	15819	4730	15003	95920;95921	129456;129457	129457			2	
FISADVHGIWSR	0	Unmodified	1386.7044	0.70443369	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	60.065	59.653	2;3	0.00023173	51232	160511_QHF_FH_JSI12i_3	63.185	58.291			0.9009	0.87192	23.205	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1578	1.0567	16.42	2	0	Median	0.73658	0.74557	11.376	2	0	Median	354160000	169390000	184770000	0	0	0	7173800	7173800	0	173050000	84869000	88180000	173930000	77347000	96588000	15820	5	15004	95922;95923;95924;95925;95926;95927	129458;129459;129460;129461;129462	129461			4	
FISANLPCNK	1	Unmodified	1162.5805	0.58047873	971;2390	Q13332;P10586	PTPRS;PTPRF	Receptor-type tyrosine-protein phosphatase S;Receptor-type tyrosine-protein phosphatase F	no	no	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	40.633	39.718	2	0.00061383	34092	160511_QHF_FH_JSI11i_2	86.136	61.981			1.2853	1.3347	18.925	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1813	1.1676	NaN	1	1	Median	1.3984	1.5259	NaN	1	1	Median	104250000	50158000	54089000	0	0	0	0	0	0	65624000	32178000	33446000	38623000	17980000	20643000	15821	2390;971	15005	95928;95929;95930	129463;129464;129465	129465			3	
FISAPTK	1	Unmodified	762.42759	0.42759012	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.25	0.433		3	1							2			2	20.973	20.21	2	0.034141	19471	160511_QHF_FH_JSI9i_2	51.572	3.6567			0.83608	0.71563	140.89	4	1	Median	0.83608	0.71563	9.2951	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69205	0.73549	243.84	2	0	Median	385570000	179630000	205940000	187930000	93349000	94584000	0	0	0	0	0	0	197640000	86283000	111350000	15822	3593	15006	95931;95932;95933;95934	129466;129467;129468	129468			3	
FISATDTIRK	1	Unmodified	1150.6346	0.63462279	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	65.361	64.061	2	0.014087	54838	160511_QHF_FH_JSI12i_2	60.91	45.029			0.44858	0.49032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44858	0.49032	NaN	1	1	Median	189940000	127760000	62179000	0	0	0	0	0	0	0	0	0	189940000	127760000	62179000	15823	5329	15007	95935	129469	129469			1	
FISEFLQPNR	0	Unmodified	1249.6455	0.64552182	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.29	0.452		5	2							2		2	3	63.465	62.801	2	1.0267E-05	54719	160511_QHF_FH_JSI11i_2	114.89	99.744			0.47164	0.42476	88.953	6	6	Median	1.3764	1.1736	154.79	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43859	0.42476	7.8784	2	2	Median	0.38553	0.40068	30.542	2	2	Median	350330000	207270000	143070000	85407000	38157000	47251000	0	0	0	143720000	92901000	50817000	121210000	76208000	45001000	15824	5734	15008	95936;95937;95938;95939;95940;95941;95942	129470;129471;129472;129473;129474;129475;129476	129475			7	
FISELAR	0	Unmodified	834.45995	0.45995289	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0			By MS/MS		3	0			1									1		41.533	41.533	2	0.0572	36430	160511_QHF_FH_JSI11i_3	41.502	7.7638			1.0371	0.95345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0371	0.95345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153860000	63572000	90286000	0	0	0	0	0	0	153860000	63572000	90286000	0	0	0	15825	3229;4066	15009	95943	129477	129477			1	
FISLASLEYSDYSK	1	Unmodified	1621.7876	0.78755419	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.64	6.97		5							6	3	4	2	2	81.638	76.655	2	2.9535E-52	70225	160511_QHF_FH_JSI12i_2	190.53	163.64			0.88864	0.92574	42.686	10	9	Median	1.1679	0.99418	38.861	3	3	Plateau	1.0119	1.2526	48.71	4	4	Median	0.76211	0.76319	39.782	2	1	Median	0.73086	0.78914	NaN	1	1	Median	773170000	360040000	413130000	219140000	95989000	123160000	339900000	146480000	193420000	192750000	101560000	91186000	21376000	16004000	5371900	15826	2518	15010	95944;95945;95946;95947;95948;95949;95950;95951;95952;95953;95954	129478;129479;129480;129481;129482;129483;129484;129485;129486;129487;129488;129489	129478			12	
FISMTSAAPHFR	0	Unmodified	1363.6707	0.67069072	960	P0DPD7			yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			52.757	51.178	3	0.00054487	42002	160511_QHF_FH_JSI9i_3	51.569	45.537			1.3703	1.13	63.649	3	3	Median	0.94887	0.77677	53.012	2	2	Median	1.6078	1.8933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71874000	32970000	38904000	54636000	27619000	27017000	17238000	5351300	11887000	0	0	0	0	0	0	15827	960	15011	95955;95956;95957	129490;129491;129492	129492			3	
FISVGYVDDTQFVR	0	Unmodified	1644.8148	0.814772	2788;1353	P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P13747;Q29963;P10321;Q29865;P30499;P01893	HLA-B;HLA-E;HLA-C;HLA-H	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, alpha chain E;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	77.7	76.922	2	3.4328E-06	67922	160511_QHF_FH_JSI9i_2	132.76	106.64			0.78567	0.97306	27.424	7	6	Median	0.94942	0.8184	30.802	2	2	Median	0.97679	1.1806	27.344	2	2	Median	0.9467	0.94374	35.406	2	2	Median	0.75616	0.83315	NaN	1	0	Median	169560000	85583000	83972000	44033000	21028000	23005000	35847000	18533000	17314000	62227000	31513000	30714000	27449000	14509000	12939000	15828	1353;2788	15012	95958;95959;95960;95961;95962;95963;95964	129493;129494;129495;129496;129497;129498;129499;129500	129496			8	
FITATGGTLHMYQLEGLNWLR	0	Unmodified	2420.2311	0.23108593	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		90.122	82.587	3	3.3241E-89	47507	160513_QHF_FH_JSI10Kac_6	224.56	199.35			1.0385	1.1121	13.831	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0263	1.2263	NaN	1	0	Median	1.0509	1.0085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	371830000	197540000	174290000	0	0	0	258170000	139240000	118930000	113660000	58307000	55352000	0	0	0	15829	2318	15013	95965;95966	129501;129502;129503;129504	129504			4	
FITDNTVEER	0	Unmodified	1222.583	0.58298115	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.55	6	5					2			4	4	2	3	32.063	29.903	2	1.6999E-07	25549	160511_QHF_FH_JSI11i_2	118.71	98.925			0.91487	0.95888	64.094	13	6	Median	1.2827	1.078	78.725	4	4	Median	0.54596	0.64361	88.766	4	2	Median	1.2694	1.2643	3.9886	2	0	Median	0.91487	0.95888	15.977	3	0	Median	1639700000	805920000	833740000	416110000	194170000	221940000	490970000	260630000	230340000	345880000	152090000	193790000	386700000	199040000	187670000	15830	403	15014	95967;95968;95969;95970;95971;95972;95973;95974;95975;95976;95977;95978;95979	129505;129506;129507;129508;129509;129510;129511;129512;129513;129514;129515;129516;129517;129518;129519;129520;129521	129519			17	
FITEIWHPNVDK	1	Unmodified	1497.7616	0.76161421	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	65.145	64.659	2;3	7.0357E-06	57363	160511_QHF_FH_JSI11i_3	123.75	105.88			2.4625	2.2472	96.962	8	8	Median	2.4718	2.0815	NaN	1	1	Median	3.4331	4.1183	NaN	1	1	Median	2.2541	2.1726	126.01	4	4	Median	3.0039	3.2396	68.329	2	2	Median	1080900000	431520000	649330000	61497000	21662000	39835000	91653000	30665000	60988000	582960000	278020000	304940000	344740000	101170000	243570000	15831	1988	15015	95980;95981;95982;95983;95984;95985;95986;95987;95988	129522;129523;129524;129525;129526;129527;129528;129529;129530	129523			9	
FITHAPPGEFNEVFNDVR	0	Unmodified	2088.0065	0.0064889465	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	3	2	75.066	74.582	2;3	5.2305E-12	64614	160511_QHF_FH_JSI12i_2	145.69	139.7			1.0904	1.1653	37.557	6	4	Median	NaN	NaN	NaN	0	0	Median	1.2322	1.4897	NaN	1	1	Median	0.96499	0.91159	40.887	3	2	Median	1.2281	1.2933	52.452	2	1	Median	437510000	197630000	239880000	0	0	0	20631000	8146600	12484000	243130000	104530000	138610000	173750000	84960000	88789000	15832	1788	15016	95989;95990;95991;95992;95993;95994;95995	129531;129532;129533;129534;129535;129536;129537;129538;129539	129535			8	
FITHLFK	1	Unmodified	904.51707	0.51707383	2978	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	46.307	45.365	3	0.0025156	37312	160511_QHF_FH_JSI9i_3	77.674	77.674			0.14793	0.12829	275.37	6	6	Median	1.8507	1.515	353.3	2	2	Median	1.5857	1.8081	404.41	2	2	Median	0.14489	0.1321	NaN	1	1	Median	0.11044	0.11371	NaN	1	1	Median	294500000	154400000	140090000	97669000	35849000	61820000	63772000	31074000	32698000	68291000	34027000	34265000	64764000	53454000	11310000	15833	2978	15017	95996;95997;95998;95999;96000;96001;96002;96003;96004	129540;129541;129542;129543;129544;129545;129546;129547;129548;129549;129550	129546			11	
FITIFGTR	0	Unmodified	953.53345	0.53345218	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.53		7	4				1	3	5	5	6	5	4	71.587	66.813	2	5.7308E-15	57935	160511_QHF_FH_JSI12i_3	176.66	113.68			0.94782	0.93707	79.515	20	10	Median	1.2048	1.0546	67.658	5	2	Median	0.71537	0.80935	75.035	6	3	Median	1.0394	1.0187	74.739	5	2	Median	0.54046	0.55909	126.35	4	3	Median	25836000000	13099000000	12736000000	6919600000	3171200000	3748400000	8557800000	4868100000	3689700000	5333200000	2715400000	2617800000	5025000000	2344700000	2680300000	15834	916	15018	96005;96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021;96022;96023;96024	129551;129552;129553;129554;129555;129556;129557;129558;129559;129560;129561;129562;129563;129564;129565;129566;129567;129568;129569;129570;129571;129572;129573;129574;129575;129576;129577;129578;129579;129580	129575			30	
FITPAHYSDVVDER	0	Unmodified	1647.7893	0.78928553	3450	Q8IXW5	RPAP2	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	50.021	49.626	3	0.00010503	43880	160511_QHF_FH_JSI11i_3	72.615	57.515			1.1393	1.0751	7.5291	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95336	1.1728	NaN	1	0	Median	1.1393	1.0751	NaN	1	0	Median	1.2376	1.249	NaN	1	0	Median	146870000	67773000	79095000	0	0	0	33713000	14724000	18989000	79917000	39680000	40237000	33238000	13370000	19868000	15835	3450	15019	96025;96026;96027;96028	129581;129582;129583;129584;129585;129586	129581			5	
FITPEDLSK	1	Unmodified	1048.5441	0.54407645	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	1	2	50.038	49.056	2	0.0037355	42843	160511_QHF_FH_JSI9i_2	69.598	50.084			3.2653	3.1396	33.296	6	6	Median	3.0111	2.515	33.002	2	2	Median	3.9001	4.5366	NaN	1	1	Median	3.1974	3.1035	NaN	1	1	Median	2.4085	2.7004	43.718	2	2	Median	1050500000	235870000	814650000	173570000	47865000	125710000	335260000	67985000	267270000	290360000	64535000	225820000	251340000	55488000	195850000	15836	723	15020	96029;96030;96031;96032;96033;96034	129587;129588;129589;129590;129591;129592	129592			6	
FITRPDVK	1	Unmodified	974.55492	0.5549159	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		22.235	22.235	3	0.026427	18839	160511_QHF_FH_JSI11i_3	40.002	23.799			3.2161	3.0981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2161	3.0981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	238790000	83492000	155300000	0	0	0	0	0	0	238790000	83492000	155300000	0	0	0	15837	4424	15021	96035	129593	129593			1	
FITSGGSNIIYVASNHFVWR	0	Unmodified	2267.1487	0.14873651	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	86.369	76.988	3	3.3505E-35	41213	160513_QHF_FH_JSI12Kac_6	172.84	144.99			1.2946	1.3277	40.137	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8008	1.7634	NaN	1	1	Median	0.9307	0.9996	NaN	1	0	Median	179200000	60989000	118210000	0	0	0	0	0	0	88648000	23928000	64721000	90551000	37061000	53489000	15838	4137	15022	96036;96037	129594;129595;129596	129596			3	
FITTVGIDFR	0	Unmodified	1167.6288	0.62880913	106;1731	P51159;O00194	RAB27A;RAB27B	Ras-related protein Rab-27A;Ras-related protein Rab-27B	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	75.199	74.252	2	0.0011751	65156	160511_QHF_FH_JSI11i_2	78.149	36.04			1.2641	1.3295	28.016	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1041	1.0905	NaN	1	1	Median	1.4472	1.6207	NaN	1	1	Median	76681000	31481000	45200000	0	0	0	0	0	0	42370000	17947000	24423000	34311000	13534000	20777000	15839	1731;106	15023	96038;96039	129597;129598	129598			2	
FITYPFDQNR	0	Unmodified	1299.6248	0.62478638	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.994	61.083	2	2.0198E-05	53182	160511_QHF_FH_JSI11i_2	98.582	85.128			1.0128	1.0381	6.1863	4	0	Median	1.2518	1.0552	NaN	1	0	Median	0.79454	0.987	NaN	1	0	Median	1.1277	1.1407	NaN	1	0	Median	0.90967	1.0213	NaN	1	0	Median	423530000	198590000	224940000	93541000	41081000	52460000	102540000	51266000	51278000	142020000	64115000	77907000	85421000	42124000	43297000	15840	3563	15024	96040;96041;96042;96043	129599;129600;129601;129602;129603;129604;129605;129606	129604			8	
FIVCLNK	1	Unmodified	892.48406	0.48405915	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	53.424	52.546	2	0.012977	46481	160511_QHF_FH_JSI10i_2	72.021	50.867			1.2842	1.4436	62.47	5	4	Median	2.3749	2.1464	NaN	1	1	Median	0.60846	0.73275	NaN	1	1	Median	0.99762	0.99654	93.719	2	2	Median	1.2842	1.4436	NaN	1	0	Median	704900000	347850000	357050000	47755000	19388000	28368000	117060000	57379000	59685000	401670000	210410000	191260000	138410000	60680000	77733000	15841	2094	15025	96044;96045;96046;96047;96048	129607;129608;129609;129610;129611	129611			5	
FIVDGWHEMDAENPLHQPSPSLNK	1	Unmodified	2760.2966	0.29659931	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.361		11	2							3	4	3	3	80.181	79.513	3;4	1.4431E-28	70360	160511_QHF_FH_JSI11i_3	161.66	156.3			0.87815	0.87332	23.898	13	6	Median	1.0615	0.89188	8.8132	3	3	Plateau	0.75744	0.93129	26.957	4	2	Median	0.87515	0.85589	25.135	3	0	Plateau	1.0108	1.0683	15.603	3	1	Plateau	1979600000	1106400000	873130000	152080000	69131000	82951000	549960000	395160000	154800000	735220000	303680000	431540000	542290000	338460000	203840000	15842	2770	15026	96049;96050;96051;96052;96053;96054;96055;96056;96057;96058;96059;96060;96061	129612;129613;129614;129615;129616;129617;129618;129619;129620;129621;129622;129623;129624;129625;129626;129627;129628;129629;129630;129631;129632;129633	129613			22	
FIVDGWHEMDAENPLHQPSPSLNK	1	Oxidation (M)	2776.2915	0.29151393	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									2	3	69.744	69.565	3;4	1.0103E-10	60177	160511_QHF_FH_JSI12i_3	86.617	74.063			0.93372	0.86748	24.841	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80561	0.74231	22.037	2	2	Median	0.96859	1.0408	23.742	3	2	Median	313150000	152910000	160240000	0	0	0	0	0	0	138740000	71665000	67076000	174410000	81243000	93168000	15843	2770	15026	96062;96063;96064;96065;96066	129634;129635;129636;129637;129638;129639;129640;129641	129636		2134	8	
FIVDLTVQEK	1	Unmodified	1190.6547	0.65468953	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.776	69.479	2	0.012507	60027	160511_QHF_FH_JSI12i_2	54.982	37.162			0.75823	0.87384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75823	0.87384	NaN	1	1	Median	66734000	39449000	27284000	0	0	0	0	0	0	0	0	0	66734000	39449000	27284000	15844	323	15027	96067	129642	129642			1	
FIVDQTQTPNLK	1	Unmodified	1402.7456	0.7456298	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	55.22	54.307	2	0.00022123	48178	160511_QHF_FH_JSI9i_1	94.692	66.679			0.68418	0.62718	30.299	2	1	Median	0.63246	0.50622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74012	0.77703	NaN	1	0	Median	60497000	34840000	25658000	24777000	16934000	7843100	0	0	0	0	0	0	35720000	17906000	17814000	15845	3266	15028	96068;96069	129643;129644	129644			2	
FIVGSDR	0	Unmodified	792.413	0.41300269	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	25.44	24.733	2	0.010449	20585	160511_QHF_FH_JSI12i_2	80.555	57.626			0.84111	0.92292	30.78	5	2	Median	0.93224	0.80108	NaN	1	0	Median	0.78647	0.9732	NaN	1	0	Median	1.101	1.0616	56.942	2	1	Median	0.84111	0.92292	NaN	1	1	Median	986990000	551820000	435170000	191620000	99570000	92055000	219990000	142130000	77864000	393330000	200550000	192780000	182030000	109560000	72471000	15846	2568	15029	96070;96071;96072;96073;96074	129645;129646;129647	129646			3	
FIVIADFRK	1	Unmodified	1107.6441	0.64406526	1647	P49247	RPIA	Ribose-5-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	2	2		69.289	60.653	3	2.2556E-06	33214	160513_QHF_FH_JSI10Kac_6	116.05	94.587			1.1961	1.2476	103.31	6	6	Median	0.89049	0.7748	162.32	2	2	Median	0.94892	1.1292	121.83	2	2	Median	1.2808	1.2702	97.494	2	2	Median	NaN	NaN	NaN	0	0	Median	294820000	141170000	153650000	64270000	29272000	34998000	149430000	76248000	73180000	81123000	35655000	45469000	0	0	0	15847	1647	15030	96075;96076;96077;96078;96079;96080	129648;129649;129650;129651;129652;129653	129653			6	
FIVKNSK	2	Acetyl (K)	876.5069	0.50690308	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		33.333	23.625	2	0.044067	14111	160513_QHF_FH_JSI11Kac_5	67.981	19.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4802000	4802000	0	0	0	0	0	0	0	4802000	4802000	0	0	0	0	15848	5206	15031	96081	129654	129654			1	
FIVLATALHEK	1	Unmodified	1240.718	0.71795849	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		69.596	60.485	3	1.4413E-05	32030	160513_QHF_FH_JSI9Kac_6	97.452	85.238			1.6129	1.4634	127.55	2	2	Median	4.1391	3.6063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6285	0.59385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38074000	20885000	17188000	9593300	2872400	6720800	0	0	0	28480000	18013000	10467000	0	0	0	15849	233	15032	96082;96083	129655;129656	129656			2	
FIVYSYK	1	Unmodified	918.48511	0.485105	1926	P60983	GMFB	Glia maturation factor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	1	1	2	53.458	46.828	2	0.005105	25368	160513_QHF_FH_JSI11Kac_6	95.62	75.338			1.0656	1.0119	28.617	6	1	Median	1.0656	0.92351	18.019	2	0	Median	0.84507	0.97604	NaN	1	0	Median	1.3433	1.2995	NaN	1	0	Median	0.84759	0.92405	53.259	2	1	Median	537100000	262740000	274360000	180680000	91495000	89182000	109220000	53039000	56178000	70191000	33319000	36872000	177020000	84889000	92128000	15850	1926	15033	96084;96085;96086;96087;96088;96089	129657;129658;129659;129660;129661;129662;129663;129664;129665;129666	129659			10	
FIVYSYKYQHDDGR	1	Acetyl (K)	1831.8529	0.85294842	1926	P60983	GMFB	Glia maturation factor beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.714	53.015	3	0.021302	28697	160513_QHF_FH_JSI11Kac_6	44.925	39.021			2.6159	2.6202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6159	2.6202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7124000	3919500	3204600	0	0	0	0	0	0	7124000	3919500	3204600	0	0	0	15851	1926	15034	96090	129667	129667	1936		1	
FIWNHGITLPLK	1	Unmodified	1437.8133	0.81325585	2681	Q15545	TAF7	Transcription initiation factor TFIID subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	81.566	81.058	3	1.9481E-05	66815	160511_QHF_FH_JSI9i_3	93.011	70.779			1.3422	1.3248	49.991	6	4	Median	1.7007	1.3988	NaN	1	0	Median	1.0593	1.2547	NaN	1	0	Median	0.99613	0.94395	84.561	2	2	Median	1.1237	1.1554	64.208	2	2	Median	188700000	89193000	99506000	20942000	7040500	13902000	19203000	9504100	9698500	48158000	26905000	21253000	100400000	45743000	54652000	15852	2681	15035	96091;96092;96093;96094;96095;96096	129668;129669;129670;129671;129672;129673;129674	129671			7	
FIWNSEK	1	Unmodified	922.45487	0.45486751	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	39.31	38.29	2	0.01811	33389	160511_QHF_FH_JSI11i_3	54.571	7.9073			0.78439	0.76715	69.727	4	3	Median	0.68871	0.5894	NaN	1	1	Median	0.39852	0.45757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4008	1.488	56.421	2	1	Median	405430000	228810000	176620000	119880000	67470000	52406000	23877000	17049000	6827700	0	0	0	261680000	144290000	117390000	15853	822	15036	96097;96098;96099;96100;96101	129675;129676;129677;129678;129679	129675			5	
FIWTNHK	1	Unmodified	944.48684	0.48683634	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	26.798	25.982	2;3	0.0016993	21146	160511_QHF_FH_JSI12i_3	117.7	85.228			0.98344	1.1024	50.711	5	2	Median	1.6258	1.3251	77.601	2	1	Median	0.98344	1.1024	NaN	1	0	Median	1.7404	1.6354	NaN	1	1	Median	0.6801	0.68939	NaN	1	0	Median	543290000	267090000	276190000	164230000	71184000	93047000	138260000	74639000	63617000	74439000	33431000	41008000	166360000	87841000	78521000	15854	5319	15037	96102;96103;96104;96105;96106	129680;129681;129682;129683;129684;129685;129686	129686			7	
FIWTNHKFNVTGTPEQYVPYSTTR	1	Acetyl (K)	2927.4242	0.42424267	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.168	73.852	3	2.5066E-14	40764	160513_QHF_FH_JSI11Kac_6	155.8	136.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13622000	13622000	0	0	0	0	0	0	0	13622000	13622000	0	0	0	0	15855	5319	15038	96107	129687	129687	3365		1	
FIWYMEYSHR	0	Unmodified	1430.6441	0.64414162	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	73.038	64.282	3	6.5773E-08	35340	160513_QHF_FH_JSI10Kac_6	92.538	78.575			0.94042	0.95995	80.368	4	4	Median	1.5523	1.3401	NaN	1	1	Median	0.2247	0.26524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94042	1.0301	57.156	2	2	Median	67529000	43785000	23744000	13665000	5197700	8467600	34860000	28489000	6371200	0	0	0	19004000	10098000	8905500	15856	3215	15039	96108;96109;96110;96111	129688;129689;129690;129691	129691			4	
FIYFNHMNLAEK	1	Unmodified	1525.7388	0.73877028	2136	P86791;P86790	CCZ1;CCZ1B	Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		1	3	1	65.494	63.252	3	0.00037815	54606	160511_QHF_FH_JSI12i_3	73.881	61.521			0.4481	0.43615	103.46	5	4	Median	NaN	NaN	NaN	0	0	Median	0.35279	0.40552	NaN	1	1	Median	0.4481	0.43615	109.8	3	2	Median	2.5269	2.5329	NaN	1	1	Median	260580000	124090000	136490000	0	0	0	50575000	31643000	18932000	118750000	61161000	57585000	91263000	31286000	59977000	15857	2136	15040	96112;96113;96114;96115;96116	129692;129693;129694;129695;129696	129696			5	
FIYGNQDLFATSQSK	1	Unmodified	1717.8312	0.83115034	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.101	66.526	2	0.00075086	58103	160511_QHF_FH_JSI11i_2	66.262	51.843			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15858	4133	15041	96117	129697	129697			1	
FIYITPEELAAVANFIR	0	Unmodified	1966.0564	0.056399252	4116	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	103.04	102.92	3	4.2952E-07	90692	160511_QHF_FH_JSI11i_2	121.31	98.174			1.1572	1.1431	27.043	3	1	Median	0.88388	0.76897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1572	1.1431	NaN	1	0	Median	1.1877	1.2894	NaN	1	1	Median	210810000	100950000	109860000	24416000	13860000	10557000	0	0	0	153520000	71971000	81552000	32875000	15122000	17753000	15859	4116	15042	96118;96119;96120	129698;129699	129699			2	
FIYMAVQHYIETLQR	0	Unmodified	1910.9713	0.97128941	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	1	3	85.554	77.572	2;3	3.5836E-70	44096	160513_QHF_FH_JSI10Kac_6	259.23	200.55			0.097416	0.11033	241.63	5	5	Median	1.5775	1.3585	408.81	2	2	Median	0.093954	0.11033	NaN	1	1	Median	0.25067	0.24111	NaN	1	1	Median	0.097416	0.1032	NaN	1	1	Median	2820100000	1820700000	999320000	749180000	324210000	424960000	1133900000	974690000	159170000	268510000	220010000	48496000	668530000	301830000	366700000	15860	2239	15043	96121;96122;96123;96124;96125;96126;96127;96128;96129	129700;129701;129702;129703;129704;129705;129706;129707;129708	129708			9	
FIYMAVQHYIETLQR	0	Oxidation (M)	1926.9662	0.96620404	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	2	1	1	1	82.097	73.776	3	2.4678E-24	41683	160513_QHF_FH_JSI10Kac_6	154.6	138.96			1.095	1.166	66.244	5	2	Median	0.93247	0.80411	70.958	2	2	Median	0.88948	1.0632	NaN	1	0	Median	3.2103	3.1245	NaN	1	0	Median	1.095	1.166	NaN	1	0	Median	965590000	458490000	507100000	479720000	211390000	268330000	316420000	164820000	151600000	86508000	39344000	47164000	82947000	42943000	40004000	15861	2239	15043	96130;96131;96132;96133;96134	129709;129710;129711;129712;129713	129713		1853	5	
FKDDSNHTIGVEFGSK	2	Unmodified	1779.8428	0.84277766	1173	P20338	RAB4A	Ras-related protein Rab-4A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.766	38.586	3	0.0059637	32912	160511_QHF_FH_JSI12i_3	49.537	24.215			1.1708	1.1147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1708	1.1147	NaN	1	1	Median	31202000	10993000	20209000	0	0	0	0	0	0	0	0	0	31202000	10993000	20209000	15862	1173	15044	96135	129714	129714			1	
FKDLGEEHFK	2	Acetyl (K)	1290.6245	0.62445203	50	CON__P02769			yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.291	41.576	3	0.00033486	23048	160513_QHF_FH_JSI11Kac_5	82.543	72.217		+	0.17845	0.17744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17845	0.17744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17300000	14356000	2943400	0	0	0	0	0	0	17300000	14356000	2943400	0	0	0	15863	50	15045	96136	129715	129715	20		1	
FKDPNAPK	2	Unmodified	915.48142	0.48141661	928;1231	P09429;B2RPK0;P23497	HMGB1;HMGB1P1;SP100	High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.76	5	6	4				1	3	7	4	7	7	8	10.846	7.3184	2;3	0.00021363	6467	160511_QHF_FH_JSI12i_3	97.431	78.7			0.81471	0.81222	31.993	26	2	Median	0.83316	0.70675	25.738	4	0	Median	0.69608	0.83185	48.762	7	2	Median	0.9426	0.92924	24.405	7	0	Median	0.8609	0.94385	24.138	8	0	Median	22789000000	10818000000	11971000000	908420000	521280000	387140000	2026200000	1263500000	762670000	8416000000	3974800000	4441200000	11439000000	5058400000	6380400000	15864	928;1231	15046	96137;96138;96139;96140;96141;96142;96143;96144;96145;96146;96147;96148;96149;96150;96151;96152;96153;96154;96155;96156;96157;96158;96159;96160;96161;96162	129716;129717;129718;129719;129720;129721;129722;129723;129724;129725;129726;129727;129728;129729;129730;129731;129732;129733;129734;129735;129736;129737;129738;129739;129740	129737			25	
FKEEGVRDVLK	2	Unmodified	1318.7245	0.72450043	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			34.095	32.675	3;4	0.00026035	26557	160511_QHF_FH_JSI9i_3	80.69	71.99			1.0612	1.1889	26.135	3	1	Plateau	1.1285	0.9146	30.125	2	1	Median	1.0612	1.1889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	262530000	122720000	139810000	125080000	55400000	69685000	137450000	67324000	70125000	0	0	0	0	0	0	15865	1520	15047	96163;96164;96165	129741;129742;129743	129742			3	
FKEPLPEYVR	1	Unmodified	1276.6816	0.68157298	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	44.589	44.47	3	0.00016183	37935	160511_QHF_FH_JSI12i_3	63.864	56.135			1.0013	0.96443	2.1318	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0511	0.97908	NaN	1	0	Median	0.95394	0.95	NaN	1	0	Median	272580000	143050000	129530000	0	0	0	0	0	0	116730000	57749000	58985000	155850000	85301000	70548000	15866	5414	15048	96166;96167	129744;129745;129746	129745			3	
FKIPEMHLK	2	Unmodified	1141.6318	0.63178602	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	54.974	54.136	3;4	0.00087795	45838	160511_QHF_FH_JSI12i_3	52.79	43.468			1.3457	1.1608	20.426	4	1	Linear	1.0731	0.88541	NaN	1	0	Median	0.58626	0.69037	NaN	1	1	Median	0.91557	0.87658	NaN	1	0	Median	1.1319	1.1384	NaN	1	0	Median	110510000	55854000	54660000	22473000	8868200	13605000	17093000	11263000	5830100	18636000	8477100	10159000	52313000	27246000	25067000	15867	2286	15049	96168;96169;96170;96171;96172	129747;129748;129749;129750;129751;129752;129753;129754	129753			8	
FKKEDEIPETVSLEMLDAAK	3	Unmodified	2292.1559	0.15591488	3958	Q96A26	FAM162A	Protein FAM162A	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		78.266	78.266	3	7.6851E-08	69987	160511_QHF_FH_JSI11i_3	100.67	86.362			0.57832	0.54363	20.553	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57832	0.54363	20.553	2	1	Median	NaN	NaN	NaN	0	0	Median	70573000	36355000	34218000	0	0	0	0	0	0	70573000	36355000	34218000	0	0	0	15868	3958	15050	96173;96174	129755;129756	129756			1	
FKLDILK	2	Unmodified	875.54804	0.54803961	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	60.89	59.997	3	0.0053566	51432	160511_QHF_FH_JSI12i_3	63.48	19.033			0.61798	0.70566	47.228	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81217	0.98544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47022	0.50531	NaN	1	1	Median	26674000	17763000	8911500	0	0	0	7292500	5121300	2171200	0	0	0	19382000	12641000	6740300	15869	413	15051	96175;96176	129757;129758	129758			2	
FKLDLDFPNLPYLLDGK	2	Unmodified	2007.0717	0.071714965	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	102.15	102.16	3	0.0040515	88892	160511_QHF_FH_JSI12i_3	49.865	40.207			0.70816	0.70804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70816	0.70804	NaN	1	1	Median	53282000	26783000	26499000	0	0	0	0	0	0	0	0	0	53282000	26783000	26499000	15870	1188	15052	96177	129759	129759			1	
FKLEESYDMESVLR	1	Unmodified	1744.8342	0.83418681	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								1	3	4	75.2	74.566	2;3	4.4516E-05	64603	160511_QHF_FH_JSI12i_3	93.237	66.03			1.1891	1.2612	47.593	7	3	Median	NaN	NaN	NaN	0	0	Median	0.46046	0.54999	NaN	1	0	Median	1.5837	1.5502	33.981	2	0	Median	1.3683	1.4515	39.716	4	3	Median	542380000	247060000	295320000	0	0	0	64512000	43235000	21277000	145000000	70078000	74923000	332870000	133750000	199120000	15871	1425	15053	96178;96179;96180;96181;96182;96183;96184;96185	129760;129761;129762;129763;129764;129765;129766;129767;129768;129769;129770	129768			11	
FKLEESYTLNSDLAR	1	Unmodified	1784.8945	0.89447888	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	64.582	63.984	2;3	2.4534E-05	55072	160511_QHF_FH_JSI12i_3	117.2	107.15			1.0505	1.068	15.907	7	1	Median	0.90121	0.76975	NaN	1	0	Median	0.84279	1.0435	NaN	1	0	Median	1.1631	1.1065	1.9717	2	1	Median	1.0505	1.068	16.31	3	0	Median	623610000	319120000	304480000	59902000	34000000	25902000	101710000	67380000	34331000	171990000	83546000	88441000	290010000	134200000	155810000	15872	1363	15054	96186;96187;96188;96189;96190;96191;96192	129771;129772;129773;129774;129775;129776;129777	129775			7	
FKLPPGEYILVPSTFEPNK	2	Unmodified	2175.1616	0.1615926	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	4	2	1	94.382	93.848	3	2.4047E-06	83469	160511_QHF_FH_JSI11i_3	95.094	91.546			0.97156	0.98421	24.664	7	2	Median	1.2914	1.072	NaN	1	0	Median	0.49856	0.55986	30.315	3	2	Plateau	1.1383	1.0615	10.688	2	0	Median	0.97156	0.97631	NaN	1	0	Median	322000000	163000000	159000000	17150000	6720100	10430000	87773000	50114000	37660000	129140000	62089000	67055000	87930000	44076000	43854000	15873	1122	15055	96193;96194;96195;96196;96197;96198;96199;96200	129778;129779;129780;129781;129782;129783;129784;129785;129786;129787;129788;129789;129790;129791;129792	129780			15	
FKMPEMHFK	2	Acetyl (K)	1235.5831	0.58312126	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	1	0	0	1			By MS/MS		16	0									1			1		72.204	62.785	3	0.014248	34056	160513_QHF_FH_JSI11Kac_6	49.189	40.745			0.23908	0.24123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23908	0.24123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7285300	5661600	1623700	0	0	0	0	0	0	7285300	5661600	1623700	0	0	0	15874	2286	15056	96201	129793	129793	2401;2402		1	
FKMPEMNIK	2	Unmodified	1136.5722	0.57222223	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1				By MS/MS	3	0			2										2	54.301	54.063	3	0.00010994	46381	160511_QHF_FH_JSI12i_3	87.298	61.255			1.0489	1.077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0489	1.077	NaN	1	1	Median	50315000	21368000	28947000	0	0	0	0	0	0	0	0	0	50315000	21368000	28947000	15875	2286	15057	96202;96203	129794;129795	129795			2	
FKNEEEVFAWNNEVK	2	Unmodified	1881.8897	0.88972785	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	3	2	59.751	59.471	2;3	9.0308E-16	52752	160511_QHF_FH_JSI11i_3	124.3	94.495			1.1016	0.99916	28.736	5	4	Median	NaN	NaN	NaN	0	0	Median	0.65998	0.79946	NaN	1	1	Median	1.0445	0.97214	3.8771	2	2	Median	1.4214	1.4654	17.853	2	1	Median	892270000	443890000	448380000	0	0	0	142240000	92670000	49569000	279460000	135230000	144230000	470570000	215990000	254580000	15876	1659	15058	96204;96205;96206;96207;96208;96209	129796;129797;129798;129799;129800;129801;129802	129798			7	
FKPAYNPYTEPSMEVFSYHQGLK	2	Unmodified	2732.2945	0.29447405	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	75.065	74.203	3;4	1.075E-20	63961	160511_QHF_FH_JSI12i_3	154.84	147.96			0.90026	0.8521	24.646	9	0	Median	1.2523	1.001	38.266	3	0	Median	0.92509	1.0787	33.353	2	0	Median	0.92077	0.85947	1.4161	2	0	Median	0.8317	0.82893	0.52681	2	0	Median	2678300000	1473600000	1204700000	265330000	121700000	143630000	406760000	218160000	188600000	880020000	464980000	415040000	1126200000	668780000	457420000	15877	5502	15059	96210;96211;96212;96213;96214;96215;96216;96217;96218	129803;129804;129805;129806;129807;129808;129809;129810;129811;129812;129813;129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831	129828			29	
FKPAYNPYTEPSMEVFSYHQGLK	2	Oxidation (M)	2748.2894	0.28938867	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			67.147	65.658	4	3.3643E-05	54994	160511_QHF_FH_JSI10i_3	56.247	50.086			0.88221	1.0151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88221	1.0151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51414000	30566000	20848000	0	0	0	51414000	30566000	20848000	0	0	0	0	0	0	15878	5502	15059	96219	129832;129833	129833		2683	2	
FKPFTVEIVDSVEAYATMLR	1	Unmodified	2315.1872	0.18715543	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	6.37		1	1						4	3	1	1	1	98.879	92.128	3	1.632E-18	53481	160513_QHF_FH_JSI10Kac_6	139.02	125.14			0.95808	0.90579	10.412	5	2	Median	1.0471	0.91327	11.114	2	1	Median	0.7538	0.90579	NaN	1	0	Median	1.0621	1.0001	NaN	1	1	Median	0.73415	0.78292	NaN	1	0	Median	814160000	409710000	404450000	267870000	121460000	146410000	302170000	162540000	139630000	75999000	28648000	47350000	168130000	97073000	71054000	15879	1460	15060	96220;96221;96222;96223;96224;96225	129834;129835;129836;129837;129838;129839;129840;129841;129842	129841			9	
FKPGYLEATLNWFR	1	Unmodified	1740.8988	0.8987764	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	3	2	88.536	81.182	2;3	8.9047E-56	43837	160513_QHF_FH_JSI11Kac_6	204.13	181.41			1.1575	1.0532	28.388	9	3	Median	1.2063	1.0167	4.9784	2	0	Median	0.76507	0.90915	0.21738	2	0	Median	1.2892	1.2321	38.612	3	2	Median	1.3698	1.4481	32.735	2	1	Median	3596400000	1760200000	1836200000	664940000	283100000	381840000	1851700000	1061200000	790450000	452050000	200560000	251490000	627750000	215310000	412440000	15880	4682	15061	96226;96227;96228;96229;96230;96231;96232;96233;96234	129843;129844;129845;129846;129847;129848;129849;129850;129851;129852;129853;129854;129855	129844			13	
FKPGYLEATLNWFRLYK	2	Unmodified	2145.1411	0.14113193	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			89.659	83.938	4	0.00048863	47613	160513_QHF_FH_JSI10Kac_6	83.418	51.599			0.28571	0.3366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28571	0.3366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35537000	29796000	5740900	0	0	0	35537000	29796000	5740900	0	0	0	0	0	0	15881	4682	15062	96235	129856	129856			1	
FKPIEQLLGFTPSSG	1	Unmodified	1619.8559	0.85590853	4025	Q96DE5	ANAPC16	Anaphase-promoting complex subunit 16	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	95.132	95.136	2	0.0098624	82325	160511_QHF_FH_JSI12i_3	89.548	76.568			6.4542	6.3321	23.921	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7577	5.3467	NaN	1	1	Median	7.2349	7.499	NaN	1	1	Median	37849000	6360800	31488000	0	0	0	0	0	0	13043000	2700300	10343000	24806000	3660500	21145000	15882	4025	15063	96236;96237	129857;129858	129858			2	
FKPLSDK	2	Unmodified	833.4647	0.46470391	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	15.603	15.007	3	0.017557	12175	160511_QHF_FH_JSI11i_3	47.082	24.951			0.76441	0.77762	57.724	5	3	Median	1.3778	1.1252	82.279	2	2	Median	0.69244	0.77762	NaN	1	0	Median	0.45184	0.42649	NaN	1	1	Median	0.94204	0.96679	NaN	1	0	Median	947560000	476450000	471110000	241700000	101470000	140230000	140630000	80865000	59764000	193260000	106590000	86667000	371970000	187520000	184450000	15883	1428	15064	96238;96239;96240;96241;96242	129859;129860;129861;129862;129863;129864	129859			6	
FKPLWIEEPTSPDDILGHATISK	2	Unmodified	2593.3428	0.34280445	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	91.685	91.664	4	8.3E-05	81672	160511_QHF_FH_JSI11i_3	52.79	50.35			0.89611	0.88221	5.5763	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91096	0.8481	NaN	1	0	Median	0.8815	0.91769	NaN	1	0	Median	126900000	67739000	59161000	0	0	0	0	0	0	77658000	42967000	34691000	49242000	24773000	24469000	15884	3234	15065	96243;96244	129865;129866;129867;129868;129869	129865			5	
FKPNTPIGMLEVEK	2	Unmodified	1601.8487	0.84871466	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		66.095	65.101	3	0.0041933	54535	160511_QHF_FH_JSI10i_3	48.823	36.537			0.90907	0.85424	12.266	3	0	Median	1.148	0.95018	NaN	1	0	Median	0.65047	0.74398	NaN	1	0	Median	0.90907	0.85424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110000000	55449000	54554000	19666000	8301100	11365000	32092000	18273000	13819000	58245000	28874000	29370000	0	0	0	15885	2862	15066	96245;96246;96247	129870;129871	129870			2	
FKPPPPNSDIGWR	1	Unmodified	1509.7728	0.7728476	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			48.677	47.089	3	0.016381	38688	160511_QHF_FH_JSI9i_3	44.511	37.782			1.2197	1.178	45.89	2	2	Median	1.0546	0.8516	NaN	1	1	Median	1.4107	1.6296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67961000	33672000	34289000	29613000	17668000	11945000	38348000	16004000	22344000	0	0	0	0	0	0	15886	1622	15067	96248;96249	129872;129873	129873			2	
FKQWNGK	2	Acetyl (K)	948.48175	0.48175096	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		34.777	25.41	2	0.050234	14231	160513_QHF_FH_JSI11Kac_6	64.757	40.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5541900	5541900	0	0	0	0	0	0	0	5541900	5541900	0	0	0	0	15887	736	15068	96250	129874	129874			1	
FKVDLTPYPTISSINK	2	Unmodified	1821.9877	0.98765098	362	O43708	GSTZ1	Maleylacetoacetate isomerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	79.007	78.879	3	0.00024754	70337	160511_QHF_FH_JSI11i_3	66.022	58.89			0.93287	0.89174	9.3711	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92313	0.83457	NaN	1	0	Median	0.94271	0.95283	NaN	1	0	Median	125310000	64563000	60747000	0	0	0	0	0	0	39773000	20899000	18873000	85537000	43663000	41874000	15888	362	15069	96251;96252;96253	129875;129876;129877;129878	129875			4	
FKVESEQQYFEIEK	2	Unmodified	1802.8727	0.87268081	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	60.685	60.16	2;3	9.6128E-07	51767	160511_QHF_FH_JSI12i_3	108.66	95.49			0.90693	0.92469	27.748	7	4	Median	0.90693	0.7982	NaN	1	1	Median	0.68356	0.83371	NaN	1	1	Median	0.94407	0.88224	60.652	2	1	Median	0.95921	1.0545	10.171	3	1	Median	548380000	252890000	295490000	27503000	13489000	14015000	72687000	49737000	22950000	166900000	63498000	103400000	281290000	126170000	155120000	15889	1016	15070	96254;96255;96256;96257;96258;96259;96260	129879;129880;129881;129882;129883;129884;129885;129886;129887;129888	129887			10	
FKWWGLQSK	2	Acetyl (K)	1220.6342	0.63422886	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.375	72.062	2	0.0031942	39645	160513_QHF_FH_JSI11Kac_6	82.749	63.969			0.10671	0.10326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10671	0.10326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22036000	20483000	1553600	0	0	0	0	0	0	22036000	20483000	1553600	0	0	0	15890	1636	15071	96261	129889	129889	1651		1	
FKYDDAER	1	Unmodified	1042.472	0.47197413	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	15.141	14.823	2;3	0.0074571	11987	160511_QHF_FH_JSI11i_3	45.598	31.789			0.99505	1.0356	13.762	7	0	Median	1.4559	1.2341	NaN	1	0	Median	0.79875	0.97774	NaN	1	0	Median	0.98558	0.92909	0.45332	2	0	Median	1.0305	1.0384	13.953	3	0	Median	978630000	465090000	513540000	65140000	16701000	48439000	72395000	37830000	34564000	398620000	222480000	176140000	442480000	188080000	254400000	15891	1327	15072	96262;96263;96264;96265;96266;96267;96268	129890;129891;129892	129890			3	
FKYDDAER	1	Acetyl (K)	1084.4825	0.48253882	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	33.498	24.329	2	0.0084839	14427	160513_QHF_FH_JSI10Kac_4	76.827	65.058			0.77866	0.89392	4.0618	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7751	0.91997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78224	0.86861	NaN	1	0	Median	26141000	13687000	12453000	0	0	0	14507000	7419800	7086900	0	0	0	11634000	6267600	5366500	15892	1327	15072	96269;96270	129893;129894;129895	129894	1258		3	
FKYDDAERR	1	Acetyl (K)	1240.5836	0.58364985	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								2	2		1	1	2	27.779	19.041	3	0.0053825	12151	160513_QHF_FH_JSI11Kac_5	68.626	56.358			1.013	1.1458	50.927	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0482	1.2161	NaN	1	0	Median	0.43889	0.43211	NaN	1	0	Median	1.0855	1.1705	11.446	2	0	Median	69100000	42184000	26916000	0	0	0	16109000	8778900	7330400	37937000	26178000	11759000	15054000	7227400	7827000	15893	1327	15073	96271;96272;96273;96274	129896;129897	129897	1258		2	
FLAAGNNYGQIAIFSLSSALSSEAK	1	Unmodified	2558.3017	0.30166791	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		96.387	88.823	3	3.0718E-22	49588	160513_QHF_FH_JSI11Kac_6	125.11	112.68			0.91454	0.97223	21.086	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6984	0.83756	NaN	1	1	Median	1.1976	1.1285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288890000	142150000	146740000	0	0	0	124500000	60109000	64387000	164390000	82043000	82350000	0	0	0	15894	3350	15074	96275;96276	129898;129899	129898			2	
FLAAGTHLGGTNLDFQMEQYIYK	1	Oxidation (M)	2632.2632	0.26317392	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	2	1	3	4	79.8	75.706	3	2.6667E-23	38785	160513_QHF_FH_JSI11Kac_6	145.9	121.8			0.87819	0.79755	49.219	10	6	Median	0.64366	0.55253	35.882	2	2	Median	0.96726	1.1488	NaN	1	0	Median	0.93631	0.89325	52.747	3	1	Median	0.81976	0.8424	58.736	4	3	Median	1048900000	555800000	493060000	89713000	52986000	36727000	19057000	7846500	11210000	421280000	226830000	194450000	518810000	268140000	250670000	15895	917	15075	96277;96278;96279;96280;96281;96282;96283;96284;96285;96286	129900;129901;129902;129903;129904;129905;129906;129907;129908;129909;129910;129911;129912;129913;129914;129915	129904		496	16	
FLAAGTHLGGTNLDFQMEQYIYK	1	Unmodified	2616.2683	0.2682593	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	6.32		12	6						8	4	7	7	8	91.241	88.337	2;3	2.0571E-246	40943	160513_QHF_FH_JSI12Kac_6	370.02	332.46			0.95941	0.94094	29.29	22	14	Median	1.317	1.1203	41.226	4	3	Median	0.70852	0.84438	18.77	4	2	Median	0.94274	0.9315	18.263	6	4	Median	1.0245	1.0459	32.33	8	5	Median	4771100000	2199200000	2571800000	791530000	313920000	477610000	904820000	551600000	353220000	1304200000	546110000	758120000	1770500000	787610000	982890000	15896	917	15075	96287;96288;96289;96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302;96303;96304;96305;96306;96307;96308;96309;96310;96311;96312	129916;129917;129918;129919;129920;129921;129922;129923;129924;129925;129926;129927;129928;129929;129930;129931;129932;129933;129934;129935;129936;129937;129938;129939;129940;129941;129942;129943;129944;129945;129946;129947;129948;129949;129950;129951;129952;129953;129954;129955;129956;129957;129958;129959;129960;129961;129962;129963;129964;129965;129966;129967;129968;129969;129970;129971;129972;129973;129974;129975;129976;129977;129978;129979;129980;129981;129982	129978			67	
FLAAVAHSPLAAQLK	1	Unmodified	1535.8824	0.88239805	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							2	2	3	3	66.479	65.66	2;3	1.93E-11	57817	160511_QHF_FH_JSI11i_3	105.13	69.72			0.15994	0.1782	108.81	7	7	Median	0.33475	0.26976	9.2083	2	2	Median	0.21542	0.24239	43.503	2	2	Median	0.029432	0.027795	37.281	2	2	Median	0.076514	0.076287	NaN	1	1	Median	641140000	483480000	157660000	176040000	106550000	69483000	168060000	101180000	66886000	116660000	110040000	6628600	180370000	165710000	14664000	15897	4856	15076	96313;96314;96315;96316;96317;96318;96319;96320;96321;96322	129983;129984;129985;129986;129987;129988;129989;129990;129991;129992;129993;129994	129985			12	
FLADQQSEIDGLK	1	Unmodified	1462.7304	0.73037367	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	3	1	1	56.232	55.475	2	9.7576E-42	50338	160511_QHF_FH_JSI12i_1	210.35	185.58			1.023	1.0394	33.209	6	2	Median	0.82218	0.68577	45.807	2	1	Median	0.89756	1.0581	12.29	2	1	Median	1.2404	1.2273	NaN	1	0	Median	1.0406	1.1138	NaN	1	0	Median	1486400000	782490000	703960000	321870000	157350000	164520000	362420000	202350000	160070000	431800000	219630000	212180000	370350000	203160000	167190000	15898	1016	15077	96323;96324;96325;96326;96327;96328;96329	129995;129996;129997;129998;129999;130000;130001;130002;130003	129997			9	
FLAEEGFYK	1	Unmodified	1102.5335	0.53351176	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.33	6.13		2						1				2	1	57.756	53.484	2	0.0031913	45943	160511_QHF_FH_JSI12i_2	71.501	37.248			1.278	1.2479	34.536	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5573	1.5546	31.082	2	2	Median	0.86907	0.97999	NaN	1	1	Median	558750000	259340000	299420000	0	0	0	0	0	0	293320000	126700000	166620000	265430000	132640000	132790000	15899	1602	15078	96330;96331;96332	130004;130005;130006	130004			3	
FLAENSASVYIK	1	Unmodified	1340.6976	0.69761697	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.03	56.087	2	0.00016296	48627	160511_QHF_FH_JSI11i_2	101.38	77.952			0.63808	0.65165	29.93	4	3	Median	0.74504	0.62568	NaN	1	1	Median	0.54648	0.6787	NaN	1	1	Median	1.1327	1.1072	NaN	1	0	Median	0.51864	0.56309	NaN	1	1	Median	115300000	69519000	45780000	22694000	13331000	9362700	27980000	19841000	8139100	41893000	20561000	21332000	22731000	15785000	6946300	15900	2455	15079	96333;96334;96335;96336	130007;130008;130009;130010	130009			4	
FLAFYQYAK	1	Unmodified	1149.5859	0.58588168	3412	Q8IVV7	GID4	Glucose-induced degradation protein 4 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	76.054	66.935	2	0.00026843	35903	160513_QHF_FH_JSI9Kac_6	92.925	61.552			0.58376	0.49369	12.97	3	3	Plateau	0.58376	0.49369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49298	0.47787	NaN	1	1	Median	0.36161	0.38868	NaN	1	1	Median	134990000	78384000	56605000	60335000	31982000	28353000	0	0	0	45670000	25934000	19735000	28984000	20468000	8516300	15901	3412	15080	96337;96338;96339	130011;130012;130013	130012			3	
FLALGDSGVGK	1	Unmodified	1062.571	0.5709599	1731	P51159	RAB27A	Ras-related protein Rab-27A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	53.496	52.542	2	0.00085583	45398	160511_QHF_FH_JSI11i_2	79.148	37.7			1.2476	1.3308	11.939	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2128	1.2231	NaN	1	1	Median	1.2834	1.4481	NaN	1	0	Median	118580000	58331000	60249000	0	0	0	0	0	0	69587000	37629000	31958000	48993000	20702000	28291000	15902	1731	15081	96340;96341	130014;130015	130015			2	
FLALQSK	1	Unmodified	805.46979	0.46978929	4174	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	39.883	30.435	2	0.055508	16390	160513_QHF_FH_JSI9Kac_6	49.358	15.62			0.99287	0.8861	6.3379	4	0	Median	1.0059	0.85377	1.7095	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99664	0.97362	NaN	1	0	Median	0.82721	0.9086	NaN	1	0	Median	52087000	26812000	25275000	17964000	8719300	9244300	0	0	0	19503000	10395000	9107800	14620000	7697200	6923100	15903	4174	15082	96342;96343;96344;96345	130016	130016			1	
FLALYLHGAA	0	Unmodified	1074.5862	0.58621603	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1		1	1	2	73.409	71.049	2	2.1442E-07	38088	160513_QHF_FH_JSI10Kac_6	114.67	103.8			0.19945	0.22316	226.78	4	4	Median	NaN	NaN	NaN	0	0	Median	0.11897	0.14005	NaN	1	1	Median	0.12581	0.12237	NaN	1	1	Median	2.0732	2.341	266.52	2	2	Median	116120000	96296000	19821000	0	0	0	88484000	80209000	8275100	8728900	8070800	658150	18904000	8016000	10888000	15904	4558	15083	96346;96347;96348;96349	130017;130018;130019;130020	130020			4	
FLAMVFQDLLTNK	1	Unmodified	1538.8167	0.81668625	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.06	101.87	2	0.030135	82797	160511_QHF_FH_JSI9i_3	47.971	35.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5085200	5085200	0	5085200	5085200	0	0	0	0	0	0	0	0	0	0	15905	3508	15084	96350	130021	130021			1	
FLANVNDR	0	Unmodified	947.48248	0.48247924	1364	P30825	SLC7A1	High affinity cationic amino acid transporter 1	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	26.748	25.899	2	0.03924	22583	160511_QHF_FH_JSI10i_2	39.646	22.406			0.68331	0.76852	16.814	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52813	0.63805	NaN	1	0	Median	0.87837	0.8925	NaN	1	0	Median	0.68331	0.76852	NaN	1	0	Median	212870000	121430000	91439000	0	0	0	65223000	39078000	26145000	98220000	54731000	43489000	49428000	27623000	21805000	15906	1364	15085	96351;96352;96353	130022	130022			1	
FLANVSTVLTSK	1	Unmodified	1278.7184	0.71835242	49	CON__P01966			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.76	4.52	3	7	5						2	5	3	4	5	70.818	69.034	2	2.5798E-05	59666	160511_QHF_FH_JSI12i_2	133.81	117.14		+	0.82693	0.70583	102.24	17	15	Median	0.82693	0.70583	76.484	5	4	Median	0.42686	0.50551	109.33	3	3	Median	1.3929	1.3874	127.29	4	4	Median	1.3467	1.4061	115.54	5	4	Median	3605700000	1771600000	1834100000	706160000	398910000	307250000	436310000	239300000	197000000	1211800000	532760000	679000000	1251500000	600680000	650840000	15907	49	15086	96354;96355;96356;96357;96358;96359;96360;96361;96362;96363;96364;96365;96366;96367;96368;96369;96370	130023;130024;130025;130026;130027;130028;130029;130030;130031;130032;130033;130034;130035;130036;130037;130038;130039;130040;130041	130025			18	
FLAPYTTFSR	0	Unmodified	1201.6132	0.61315906	4377	Q9BRP4	PAAF1	Proteasomal ATPase-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	62.762	61.735	2	0.0036249	53784	160511_QHF_FH_JSI11i_2	56.258	40.596			1.1613	1.3361	22.529	5	3	Median	1.6888	1.4715	NaN	1	1	Median	1.1717	1.378	4.3684	2	2	Median	1.0404	1.0383	NaN	1	0	Median	0.77112	0.87418	NaN	1	0	Median	192990000	96848000	96144000	33668000	17287000	16380000	70740000	35512000	35228000	53779000	24669000	29110000	34806000	19380000	15426000	15908	4377	15087	96371;96372;96373;96374;96375	130042;130043;130044;130045;130046	130045			5	
FLAQILTAFPALR	0	Unmodified	1459.8551	0.85512067	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.607	87.213	2	3.0374E-20	49009	160513_QHF_FH_JSI9Kac_6	158.05	114.24			3.4435	3.5449	118.57	6	5	Median	4.4871	3.9092	NaN	1	0	Median	1.1167	1.3137	160.81	2	2	Median	1.5309	1.4816	109.54	2	2	Median	8.8268	9.2882	NaN	1	1	Median	713690000	382090000	331600000	151150000	86154000	65000000	231350000	136920000	94429000	201800000	89775000	112020000	129390000	69237000	60153000	15909	1892	15088	96376;96377;96378;96379;96380;96381;96382;96383	130047;130048;130049;130050;130051;130052;130053;130054	130049			8	
FLASSGHDQR	0	Unmodified	1116.5312	0.53122035	4758	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			8.9818	8.5071	2	0.028793	6513	160511_QHF_FH_JSI10i_2	40.067	25.398			0.72992	0.88476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72992	0.88476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18556000	10523000	8033100	0	0	0	18556000	10523000	8033100	0	0	0	0	0	0	15910	4758	15089	96384	130055	130055			1	
FLASVSTVLTSK	1	Unmodified	1251.7075	0.70745338	2079	P69905	HBA1	Hemoglobin subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.13		5	7						5	4	4	4	5	71.818	68.677	2	1.2016E-07	36374	160513_QHF_FH_JSI11Kac_6	141.88	87.721			1.0189	1.1686	106.06	16	15	Median	0.76058	0.64594	136.43	4	3	Median	0.68509	0.82412	87.925	4	4	Median	2.9622	2.8885	85.33	3	3	Median	1.1521	1.2813	116.1	5	5	Median	814570000	365050000	449510000	106460000	57231000	49233000	125050000	69525000	55522000	179620000	55498000	124120000	403440000	182800000	220640000	15911	2079	15090	96385;96386;96387;96388;96389;96390;96391;96392;96393;96394;96395;96396;96397;96398;96399;96400;96401	130056;130057;130058;130059;130060;130061;130062;130063;130064;130065;130066;130067;130068;130069;130070;130071;130072	130061			17	
FLATPPNGNFADAVFR	0	Unmodified	1735.8682	0.86820455	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		4									1	1	2	87.313	86.536	2	1.2693E-05	76138	160511_QHF_FH_JSI11i_2	119.45	95.598			1.0853	1.2412	5.7597	4	2	Median	NaN	NaN	NaN	0	0	Median	1.026	1.2549	NaN	1	0	Median	1.2358	1.2277	NaN	1	0	Median	1.0744	1.2011	9.2927	2	2	Median	143030000	72854000	70173000	0	0	0	38653000	19529000	19124000	41034000	24317000	16717000	63340000	29008000	34332000	15912	486	15091	96402;96403;96404;96405	130073;130074;130075	130075			3	
FLAVGLVDNTVR	0	Unmodified	1302.7296	0.7295858	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	3	2	2	1	75.3	71.658	2	1.2682E-10	63097	160511_QHF_FH_JSI12i_2	142.43	101.4			0.88589	0.98299	44.793	8	2	Median	1.1069	0.95329	71.573	3	1	Median	0.83696	1.0144	4.7534	2	0	Median	1.2412	1.213	54.197	2	1	Median	0.89624	0.98516	NaN	1	0	Median	1291500000	620150000	671350000	237130000	90966000	146160000	489840000	271070000	218770000	370140000	160320000	209820000	194380000	97792000	96592000	15913	2665	15092	96406;96407;96408;96409;96410;96411;96412;96413	130076;130077;130078;130079;130080;130081;130082;130083;130084;130085;130086;130087	130077			11	
FLAVLGR	0	Unmodified	774.47521	0.47520902	2731	Q16512	PKN1	Serine/threonine-protein kinase N1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.355	52.789	2	0.010434	44109	160511_QHF_FH_JSI10i_3	74.849	0			0.767	0.72963	4.6069	2	0	Median	0.89786	0.70625	NaN	1	0	Median	0.65521	0.75379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	860980000	445890000	415090000	495220000	225260000	269960000	365760000	220630000	145130000	0	0	0	0	0	0	15914	2731	15093	96414;96415	130088;130089	130088			2	
FLAVSTDYKK	2	Unmodified	1170.6285	0.62847478	4970	Q9NRX3	NDUFA4L2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	35.553	35.425	2;3	0.0015924	30104	160511_QHF_FH_JSI12i_3	82.452	65.913			1.8727	1.8927	39.463	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8727	1.8927	39.463	2	2	Median	131270000	42055000	89220000	0	0	0	0	0	0	0	0	0	131270000	42055000	89220000	15915	4970	15094	96416;96417;96418	130090;130091;130092	130091			3	
FLCFGSEGGTYYIK	1	Unmodified	1640.7545	0.75447993	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	80.271	79.369	2	0.0028644	68534	160511_QHF_FH_JSI12i_2	67.776	50.751			0.48001	0.50524	2.9174	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50939	0.51577	NaN	1	1	Median	0.45232	0.49492	NaN	1	1	Median	47553000	34040000	13512000	0	0	0	0	0	0	28307000	21379000	6928400	19245000	12662000	6583700	15916	962	15095	96419;96420	130093;130094	130093			2	
FLCIFLEK	1	Unmodified	1068.5678	0.56778878	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.075	83.472	2	0.023809	73431	160511_QHF_FH_JSI11i_2	53.968	34.181			0.090814	0.08831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.090814	0.08831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8855100	8156700	698330	0	0	0	0	0	0	8855100	8156700	698330	0	0	0	15917	2094	15096	96421	130095	130095			1	
FLCLPPGITVCDSGR	0	Unmodified	1690.8171	0.81709696	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	73.731	65.019	3	0.052106	34570	160513_QHF_FH_JSI9Kac_6	18.138	6.1618			1.0466	1.0442	28.013	4	0	Median	1.0575	0.8939	NaN	1	0	Median	1.0358	1.2198	NaN	1	0	Median	1.5753	1.5541	NaN	1	0	Median	0.79588	0.85705	NaN	1	0	Median	155940000	78520000	77419000	32305000	20832000	11473000	70926000	31888000	39038000	25005000	10023000	14981000	27702000	15776000	11926000	15918	4668	15097	96422;96423;96424;96425	130096	130096			1	
FLCSGGHNALFETFNWALSMGGK	1	Unmodified	2543.1726	0.17258477	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.981	89.261	3	6.2468E-11	51404	160513_QHF_FH_JSI10Kac_6	150.09	138.79			0.68249	0.78606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68249	0.78606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85601000	58999000	26602000	0	0	0	85601000	58999000	26602000	0	0	0	0	0	0	15919	3290	15098	96426	130097	130097			1	
FLDAGHK	1	Unmodified	786.40244	0.40243801	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.45		7	5						3	4	5	3	3	11.017	9.1988	2	0.0054882	7496	160511_QHF_FH_JSI10i_3	100.07	66.328			0.83454	0.82296	90.689	15	11	Median	1.0085	0.84393	69.932	4	2	Median	0.6658	0.78612	103.52	5	4	Median	0.45225	0.73392	130.66	3	3	Plateau	0.77951	0.82296	102.45	3	2	Median	10084000000	5590000000	4493900000	1625600000	730850000	894720000	2619000000	1567300000	1051700000	3692400000	2391800000	1300600000	2146900000	900010000	1246900000	15920	1344	15099	96427;96428;96429;96430;96431;96432;96433;96434;96435;96436;96437;96438;96439;96440;96441	130098;130099;130100;130101;130102;130103;130104;130105;130106;130107;130108;130109;130110;130111	130101			14	
FLDAGHKLNFAVASR	1	Acetyl (K)	1686.8842	0.88418897	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		76.291	66.966	2;3	0.00050067	36488	160513_QHF_FH_JSI11Kac_6	82.121	69.975			0.055513	0.053541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.055513	0.053541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74042000	71200000	2842600	0	0	0	0	0	0	74042000	71200000	2842600	0	0	0	15921	1344	15100	96442;96443	130112;130113	130112	1272		2	
FLDALISLLS	0	Unmodified	1090.6274	0.62741214	523	O75419	CDC45	Cell division control protein 45 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.63		7							1	1	2	2	3	103.24	101.98	2	0.0013012	89411	160511_QHF_FH_JSI12i_2	77.674	60.898			0.10176	0.1072	24.522	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.091528	0.090132	NaN	1	1	Median	0.11314	0.12749	NaN	1	1	Median	55212000	22971000	32241000	3734700	0	3734700	6725400	2887500	3837900	18772000	11582000	7189900	25979000	8501000	17478000	15922	523	15101	96444;96445;96446;96447;96448;96449;96450;96451	130114;130115;130116;130117;130118;130119;130120;130121	130114			8	
FLDASGAK	1	Unmodified	807.41267	0.41266834	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	19.864	17.912	2	0.0015998	15532	160511_QHF_FH_JSI12i_1	87.323	20.291			0.84433	0.93893	24.307	5	0	Linear	1.229	1.0006	NaN	1	0	Median	0.74581	0.90169	NaN	1	0	Median	1.1916	1.1669	42.202	2	0	Median	0.9049	0.93893	NaN	1	0	Median	2019400000	872590000	1146800000	306600000	107530000	199070000	644290000	325370000	318920000	579630000	214970000	364660000	488870000	224730000	264140000	15923	3218	15102	96452;96453;96454;96455;96456	130122;130123;130124;130125;130126;130127	130124			6	
FLDDLFK	1	Unmodified	896.46437	0.46436956	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	74.957	74.077	2	0.060724	63954	160511_QHF_FH_JSI12i_2	45.718	17.206			1.6214	1.5938	41.637	3	3	Median	NaN	NaN	NaN	0	0	Median	0.79181	0.96668	NaN	1	1	Median	1.6214	1.5938	NaN	1	1	Median	2.0907	2.2096	NaN	1	1	Median	28803000	12326000	16477000	0	0	0	8558700	5479700	3079000	12813000	4380800	8432300	7431300	2466000	4965300	15924	5622	15103	96457;96458;96459	130128;130129;130130	130128			3	
FLDDLGNAK	1	Unmodified	991.49746	0.4974606	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								4	2	1	3	41.349	40.42	2	0.00024593	35258	160511_QHF_FH_JSI9i_2	98.458	41.911			1.2704	1.4134	33.416	9	6	Median	1.809	1.5405	38.456	3	3	Median	1.4726	1.7808	50.532	2	1	Median	1.2704	1.211	NaN	1	0	Median	1.226	1.4134	26.977	3	2	Median	1780000000	932960000	847010000	439290000	202230000	237060000	443970000	263170000	180800000	325100000	175490000	149610000	571610000	292070000	279540000	15925	731	15104	96460;96461;96462;96463;96464;96465;96466;96467;96468;96469	130131;130132;130133;130134;130135;130136;130137;130138;130139;130140;130141;130142	130141			12	
FLDELDAVQMD	0	Unmodified	1294.5751	0.57511858	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	84.225	83.729	2	6.2507E-05	74397	160511_QHF_FH_JSI9i_1	93.429	90.577			1.0747	0.89342	27.435	3	1	Plateau	1.0933	0.89342	NaN	1	0	Median	0.52511	0.62522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0357	1.0722	NaN	1	0	Median	107540000	56028000	51510000	35640000	18483000	17157000	36773000	20740000	16033000	0	0	0	35126000	16805000	18320000	15926	260	15105	96470;96471;96472	130143;130144;130145;130146	130145			4	
FLDFFSK	1	Unmodified	902.4538	0.45380487	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.642	77.009	2	0.056861	67554	160511_QHF_FH_JSI11i_2	46.426	22.454			2.0536	2.0172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0536	2.0172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11732000	4652600	7079600	0	0	0	0	0	0	11732000	4652600	7079600	0	0	0	15927	2386	15106	96473	130147	130147			1	
FLDFWRK	1	Unmodified	1010.5338	0.53378653	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		64.221	63.221	3	0.012775	55929	160511_QHF_FH_JSI11i_3	46.016	42.444			2.0379	2.2452	38.459	3	3	Median	2.9186	2.4089	NaN	1	1	Median	2.0379	2.2452	NaN	1	1	Median	1.2555	1.198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81664000	29206000	52458000	21907000	4294100	17613000	30058000	10946000	19112000	29699000	13966000	15733000	0	0	0	15928	3686	15107	96474;96475;96476	130148;130149;130150;130151	130149			4	
FLDGDELTLADCNLLPK	1	Unmodified	1932.9503	0.9502792	4187	Q9NZA1;Q96NY7	CLIC5;CLIC6	Chloride intracellular channel protein 5;Chloride intracellular channel protein 6	yes	no	0	0	0	0				By MS/MS	1	0	1												1	95.828	95.533	2	0.0063994	86737	160511_QHF_FH_JSI12i_1	49.423	27.377			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15929	4187	15108	96477	130152	130152			1	
FLDGIYVSEK	1	Unmodified	1169.5968	0.5968403	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.91	4	7	4				1	4	1	4	6	5	6	62.974	59.379	1;2	1.9108E-10	52117	160511_QHF_FH_JSI9i_2	140.83	114.94			0.99039	0.89598	57.657	21	9	Median	1.0282	0.83489	23.343	4	0	Median	0.97124	1.1592	57.217	6	2	Median	0.99039	0.97247	76.788	5	3	Median	0.66251	0.68964	65.266	6	4	Median	14133000000	7078500000	7054400000	1628500000	742260000	886220000	2817200000	1425400000	1391800000	5418900000	2539600000	2879300000	4268300000	2371200000	1897100000	15930	1398	15109	96478;96479;96480;96481;96482;96483;96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494;96495;96496;96497;96498	130153;130154;130155;130156;130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167;130168;130169;130170;130171;130172;130173;130174;130175;130176;130177;130178;130179;130180;130181;130182;130183;130184;130185;130186;130187;130188;130189;130190	130175			38	
FLDGNELTLADCNLLPK	1	Unmodified	1931.9663	0.96626362	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	10	9								6	5	4	4	95.403	95.101	2;3	5.3532E-11	83530	160511_QHF_FH_JSI11i_2	169.62	151.81			0.84598	0.9125	32.403	19	10	Median	1.123	0.97491	33.683	6	6	Median	0.71404	0.8474	37.453	5	3	Median	0.73638	0.72994	17.6	4	0	Median	1.1188	1.1891	18.905	4	1	Median	917110000	505270000	411830000	104040000	47621000	56415000	324530000	207010000	117520000	274580000	156360000	118220000	213960000	94287000	119680000	15931	119	15110	96499;96500;96501;96502;96503;96504;96505;96506;96507;96508;96509;96510;96511;96512;96513;96514;96515;96516;96517	130191;130192;130193;130194;130195;130196;130197;130198;130199;130200;130201;130202;130203;130204;130205;130206;130207;130208;130209;130210;130211;130212;130213;130214;130215;130216	130211			26	
FLDINLYK	1	Unmodified	1024.5593	0.55933258	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		72.89	72.264	2	0.012062	63274	160511_QHF_FH_JSI11i_2	62.464	7.8528			0.81515	0.80738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81515	0.80738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43896000	18795000	25101000	0	0	0	0	0	0	43896000	18795000	25101000	0	0	0	15932	4951	15111	96518	130217	130217			1	
FLDLWNK	1	Unmodified	934.49125	0.49125301	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.941	70.156	2	0.049097	62408	160511_QHF_FH_JSI10i_2	47.849	23.876			2.1314	2.6421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1314	2.6421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80179000	31923000	48256000	0	0	0	80179000	31923000	48256000	0	0	0	0	0	0	15933	4091	15112	96519	130218	130218			1	
FLDPITGTFR	0	Unmodified	1165.6132	0.61315906	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.408	73.463	2	0.016286	64507	160511_QHF_FH_JSI11i_2	55.898	7.3364			1.0851	1.1456	10.986	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2246	1.2381	NaN	1	0	Median	0.96152	1.0599	NaN	1	0	Median	187350000	92750000	94595000	0	0	0	0	0	0	128180000	62048000	66133000	59164000	30702000	28463000	15934	1501	15113	96520;96521	130219;130220	130220			2	
FLDPNNIPK	1	Unmodified	1056.5604	0.56039521	4474	Q9BVK2	ALG8	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	48.073	47.3	2	3.5787E-05	42660	160511_QHF_FH_JSI10i_1	99.802	76.374			1.0817	1.056	47.554	6	2	Median	1.3046	1.0797	NaN	1	0	Median	0.88156	1.0328	NaN	1	0	Median	1.6863	1.6805	45.231	2	1	Median	0.66665	0.71624	44.249	2	1	Median	801220000	372360000	428850000	113840000	41578000	72263000	194890000	87755000	107140000	263450000	117280000	146160000	229030000	125740000	103290000	15935	4474	15114	96522;96523;96524;96525;96526;96527	130221;130222;130223;130224;130225;130226;130227;130228;130229	130227			9	
FLDQFAE	0	Unmodified	868.39668	0.39668393	3822	Q8WZ82	OVCA2	Ovarian cancer-associated gene 2 protein	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			59.265	58.508	2	0.030052	52930	160511_QHF_FH_JSI10i_1	52.299	52.299			0.83536	0.81026	4.758	2	0	Median	0.94761	0.78346	NaN	1	0	Median	0.73641	0.83799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57964000	33296000	24668000	33604000	18399000	15206000	24359000	14897000	9462400	0	0	0	0	0	0	15936	3822	15115	96528;96529	130230	130230			1	
FLDQNLQK	1	Unmodified	1004.5291	0.52909508	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	31.586	31.002	2	3.8035E-05	26162	160511_QHF_FH_JSI11i_2	137.18	82.974			0.54119	0.5531	73.519	6	5	Median	0.59806	0.50984	NaN	1	1	Median	0.86996	1.0382	77.538	2	2	Median	0.48902	0.48086	111.98	2	1	Median	0.41665	0.42152	NaN	1	1	Median	1306500000	764350000	542180000	205860000	119890000	85967000	387930000	234270000	153660000	530360000	306990000	223370000	182390000	103200000	79188000	15937	1085	15116	96530;96531;96532;96533;96534;96535	130231;130232;130233;130234;130235;130236	130235			6	
FLDQSGPPSGDVNSLDK	1	Unmodified	1774.8374	0.83735793	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		52.306	51.896	2	2.3585E-05	47024	160511_QHF_FH_JSI11i_1	97.551	80.609			1.2938	1.3765	45.745	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84213	0.99606	NaN	1	0	Median	1.9879	1.9021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69414000	27354000	42060000	0	0	0	36425000	18457000	17968000	32989000	8896900	24092000	0	0	0	15938	2309	15117	96536;96537	130237;130238	130237			1	
FLDSTGSR	0	Unmodified	881.4243	0.42429566	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		14.36	14.137	2	0.0030932	11216	160511_QHF_FH_JSI11i_2	73.975	37.789			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15939	5722	15118	96538	130239	130239			1	
FLDTSHYSTAGSSSVR	0	Unmodified	1713.7958	0.79582747	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	2	1	2	2	35.334	33.483	3	1.3886E-05	28614	160511_QHF_FH_JSI11i_2	92.8	81.53			1.2395	1.2619	29.15	7	2	Median	1.4028	1.1959	18.279	2	0	Median	1.0553	1.3282	NaN	1	0	Median	1.0623	1.0254	29.355	2	1	Median	1.0596	1.0942	58.032	2	1	Median	401330000	182470000	218860000	72766000	28644000	44122000	95702000	46498000	49204000	142650000	56427000	86222000	90217000	50906000	39311000	15940	3962	15119	96539;96540;96541;96542;96543;96544;96545	130240;130241;130242;130243;130244;130245;130246;130247;130248	130243			9	
FLEEATR	0	Unmodified	864.43413	0.43413207	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	20.243	19.536	2	0.0075894	16070	160511_QHF_FH_JSI11i_2	86.866	36.747			1.0437	1.0189	63.782	9	2	Median	1.1924	0.99291	17.267	2	0	Median	0.82189	0.98495	21.026	2	0	Median	1.0483	1.0413	3.0757	2	0	Median	0.63008	0.6502	124.51	3	2	Median	5916600000	3031600000	2885000000	848770000	411610000	437150000	1226700000	653640000	573070000	1990100000	968260000	1021800000	1851000000	998120000	852910000	15941	1372	15120	96546;96547;96548;96549;96550;96551;96552;96553;96554	130249;130250;130251;130252;130253;130254;130255	130254			7	
FLEEATRVSQEHPVVLTK	1	Unmodified	2082.111	0.11095402	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.11	52.874	3	0.057374	45411	160511_QHF_FH_JSI12i_3	28.869	15.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21659000	21659000	0	0	0	0	0	0	0	0	0	0	21659000	21659000	0	15942	1372	15121	96555	130256	130256			1	
FLEEEVYPLLK	1	Unmodified	1378.7384	0.73841916	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.589	5	8	1							3	3	5	3	84.538	83.975	2	3.183E-07	76281	160511_QHF_FH_JSI10i_1	119.75	69.706			0.76977	0.75688	77.128	14	12	Median	0.91182	0.73429	115.53	3	3	Median	0.59503	0.71066	70.756	3	2	Plateau	0.63922	0.6473	82.377	5	5	Median	0.76382	0.78016	61.057	3	2	Median	1126700000	532970000	593690000	209080000	62363000	146720000	265010000	131320000	133690000	425090000	207310000	217780000	227480000	131980000	95497000	15943	1359	15122	96556;96557;96558;96559;96560;96561;96562;96563;96564;96565;96566;96567;96568;96569	130257;130258;130259;130260;130261;130262;130263;130264;130265;130266;130267;130268;130269;130270;130271;130272;130273	130265			17	
FLEEFITPIVK	1	Unmodified	1334.7486	0.74858991	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							3	2	2	2	93.904	93.418	2	1.7506E-06	82241	160511_QHF_FH_JSI9i_2	118.71	103.45			1.3665	1.4503	191.92	8	8	Median	1.587	1.3932	248.76	2	2	Median	1.1914	1.4574	251.28	2	2	Median	1.7352	1.7231	282.24	2	2	Median	1.3451	1.4503	229.41	2	2	Median	335780000	142260000	193520000	58392000	24384000	34008000	70422000	37399000	33022000	122900000	41766000	81129000	84076000	38714000	45361000	15944	999	15123	96570;96571;96572;96573;96574;96575;96576;96577;96578	130274;130275;130276;130277;130278;130279;130280;130281;130282	130278			9	
FLEENSSDPTYTSSLGGK	1	Unmodified	1930.8796	0.87961668	1833	P54760	EPHB4	Ephrin type-B receptor 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.639	51.973	2	1.9704E-08	47187	160511_QHF_FH_JSI12i_1	128.96	105.74			1.7938	1.8818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7938	1.8818	NaN	1	1	Median	20786000	4536100	16250000	0	0	0	0	0	0	0	0	0	20786000	4536100	16250000	15945	1833	15124	96579	130283;130284	130283			2	
FLEESVSMSPEER	0	Unmodified	1538.6923	0.6922736	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								3	4	4	3	51.534	50.743	2	1.7142E-30	43268	160511_QHF_FH_JSI12i_2	185.77	148.43			1.1714	1.2017	47.606	10	9	Median	1.4097	1.2319	79.556	2	2	Median	1.1904	1.3915	50.134	3	3	Median	1.1526	1.1317	61.95	3	3	Median	0.97978	1.0256	30.886	2	1	Median	992990000	486930000	506060000	97769000	39453000	58315000	326220000	170380000	155830000	311590000	150520000	161070000	257410000	126570000	130840000	15946	1076	15125	96580;96581;96582;96583;96584;96585;96586;96587;96588;96589;96590;96591;96592;96593	130285;130286;130287;130288;130289;130290;130291;130292;130293;130294;130295;130296;130297;130298;130299;130300;130301	130288			17	
FLEETNR	0	Unmodified	907.43995	0.43994572	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	16.205	15.529	2	0.016411	13228	160511_QHF_FH_JSI10i_2	56.091	32.119			0.7654	0.85498	6.4759	3	0	Plateau	1.0026	0.85498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92391	0.92636	NaN	1	0	Median	0.73915	0.81492	NaN	1	0	Median	314510000	163210000	151300000	80883000	42882000	38001000	0	0	0	105280000	51161000	54119000	128350000	69167000	59181000	15947	2457	15126	96594;96595;96596;96597	130302;130303;130304	130304			3	
FLEEYLSSTPQR	0	Unmodified	1468.7198	0.71980898	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.45	3	7						6		4	2	4	6	62.359	57.566	2	2.7922E-11	50335	160511_QHF_FH_JSI11i_2	198.87	150.07			0.9539	0.79428	95.576	15	15	Median	1.252	1.0473	95.758	4	4	Median	0.63592	0.76063	128.04	2	2	Median	0.84369	0.82743	76.229	4	4	Median	0.50587	0.55669	127.92	5	5	Median	1370500000	751160000	619300000	221670000	97796000	123870000	161260000	116810000	44452000	576690000	327210000	249470000	410850000	209340000	201510000	15948	1964	15127	96598;96599;96600;96601;96602;96603;96604;96605;96606;96607;96608;96609;96610;96611;96612;96613	130305;130306;130307;130308;130309;130310;130311;130312;130313;130314;130315;130316;130317;130318;130319;130320	130315			16	
FLEFQYLTGGLVDPEVHGR	0	Unmodified	2176.0953	0.095303954	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.56		7	1						2	2	2	4	2	97.245	95.365	3	6.0677E-25	86126	160511_QHF_FH_JSI12i_2	149.95	144.24			1.2369	1.1525	19.514	8	1	Median	1.2888	1.1162	10.503	2	0	Median	0.80852	0.9855	0.055017	2	0	Median	1.2775	1.3034	19.094	3	1	Median	0.98408	1.1047	NaN	1	0	Median	1036600000	487690000	548880000	282330000	119660000	162670000	510280000	253910000	256370000	174580000	77267000	97308000	69386000	36855000	32530000	15949	1085	15128	96614;96615;96616;96617;96618;96619;96620;96621;96622;96623	130321;130322;130323;130324;130325;130326;130327;130328;130329;130330;130331;130332;130333;130334;130335;130336;130337;130338	130323			18	
FLEGELIHDLLTIFVSAK	1	Unmodified	2044.1245	0.12447882	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	101.99	93.872	2;3	7.0243E-215	56711	160513_QHF_FH_JSI10Kac_6	325.3	277.29			0.67163	0.56444	35.51	6	0	Median	0.67163	0.56444	1.4142	2	0	Median	0.70282	0.83448	4.9125	2	0	Median	0.33789	0.32047	NaN	1	0	Median	0.49429	0.52519	NaN	1	0	Median	3915100000	2378400000	1536800000	1226700000	790680000	436020000	2541800000	1482900000	1058900000	80746000	58501000	22245000	65901000	46269000	19632000	15950	3222	15129	96624;96625;96626;96627;96628;96629;96630	130339;130340;130341;130342;130343;130344;130345;130346;130347;130348;130349;130350;130351	130349			13	
FLEHLSGAGK	1	Unmodified	1057.5556	0.55564418	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	3.01		12	7						1	5	4	6	5	26.68	25.47	2;3	0.00015336	20697	160511_QHF_FH_JSI12i_3	96.034	67.815			0.44226	0.40468	154.63	20	20	Median	0.48817	0.42317	137.17	5	5	Median	0.25354	0.30558	158.71	4	4	Median	0.44514	0.43118	164.49	6	6	Median	2.3904	2.7027	180.71	5	5	Median	2721600000	1558000000	1163700000	642090000	289500000	352590000	434410000	292400000	142000000	960160000	644530000	315630000	684990000	331530000	353460000	15951	2176	15130	96631;96632;96633;96634;96635;96636;96637;96638;96639;96640;96641;96642;96643;96644;96645;96646;96647;96648;96649;96650	130352;130353;130354;130355;130356;130357;130358;130359;130360;130361;130362;130363;130364;130365;130366;130367;130368;130369;130370;130371;130372	130371			21	
FLEIGKFDLSQNHPLGMAIFLK	2	Acetyl (K)	2559.356	0.35595209	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.489	88.081	3	5.1797E-89	49753	160513_QHF_FH_JSI9Kac_6	219.22	198.33			1.104	1.1489	24.081	4	0	Median	1.3439	1.138	NaN	1	0	Median	0.96646	1.1598	NaN	1	0	Median	0.80011	0.75589	NaN	1	0	Median	1.2612	1.3163	NaN	1	0	Median	2898500000	1372700000	1525900000	742600000	321700000	420900000	483100000	239650000	243460000	895100000	474710000	420390000	777730000	336610000	441110000	15952	1650	15131	96651;96652;96653;96654	130373;130374;130375;130376;130377;130378;130379	130375	1665		7	
FLEIGKFDLSQNHPLGMAIFLK	2	Acetyl (K);Oxidation (M)	2575.3509	0.35086671	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	93.293	84.84	3	8.8819E-10	49813	160513_QHF_FH_JSI10Kac_6	148.89	119.45			5.1164	4.9401	49.157	2	2	Median	8.0699	6.9935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2438	3.4896	NaN	1	1	Median	487630000	289610000	198030000	168730000	90872000	77853000	80663000	80663000	0	89330000	89330000	0	148910000	28741000	120170000	15953	1650	15131	96655;96656;96657;96658;96659	130380;130381;130382;130383;130384	130384	1665	1315	5	
FLEIGKFDLSQNHPLGMAIFLK	2	Unmodified	2517.3454	0.34538741	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			92.14	84.85	4	0.00055789	49157	160513_QHF_FH_JSI10Kac_6	57.068	38.531			0.74293	0.7498	48.027	2	0	Median	1.2231	1.053	NaN	1	0	Median	0.45125	0.5339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	313430000	158580000	154850000	110290000	51908000	58382000	203140000	106670000	96470000	0	0	0	0	0	0	15954	1650	15131	96660;96661	130385;130386	130386			2	
FLELLPK	1	Unmodified	858.52149	0.52149051	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	3	2	67.614	66.902	2	0.0050577	59666	160511_QHF_FH_JSI10i_2	108.24	51.728			0.1614	0.15067	172.51	7	7	Median	0.1614	0.14129	NaN	1	1	Median	0.51377	0.63572	264.66	2	2	Median	0.16546	0.15202	207.51	3	3	Median	0.1366	0.15067	NaN	1	1	Median	1119000000	684470000	434550000	104140000	76395000	27742000	359810000	212160000	147650000	476290000	261380000	214910000	178780000	134530000	44251000	15955	2046	15132	96662;96663;96664;96665;96666;96667;96668;96669	130387;130388;130389;130390;130391;130392;130393;130394;130395;130396;130397	130396			11	
FLEMCNDLLAR	0	Unmodified	1380.653	0.65299174	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	73.747	72.797	2	0.00043344	63840	160511_QHF_FH_JSI11i_2	87.258	63.83			0.85736	1.0444	70.038	5	5	Median	0.82424	0.68636	NaN	1	1	Median	0.85736	1.0444	NaN	1	1	Median	0.53935	0.53729	NaN	1	1	Median	1.8083	2.0091	70.58	2	2	Median	416230000	182880000	233350000	34754000	15500000	19253000	85145000	42987000	42158000	102550000	51561000	50989000	193780000	72835000	120950000	15956	1417	15133	96670;96671;96672;96673;96674	130398;130399;130400;130401;130402	130401			5	
FLEMHQL	0	Unmodified	916.44767	0.44767364	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	54.149	52.984	2	0.0013855	45438	160511_QHF_FH_JSI12i_2	121.29	108.74			0.89508	0.84364	23.063	6	3	Median	0.83081	0.69588	15.097	2	2	Median	0.73082	0.86652	33.375	2	1	Median	0.8975	0.91923	NaN	1	0	Median	0.93621	1.0525	NaN	1	0	Median	1507700000	707840000	799840000	243130000	122770000	120360000	376370000	208400000	167970000	545230000	237750000	307480000	342960000	138920000	204040000	15957	5697	15134	96675;96676;96677;96678;96679;96680	130403;130404;130405;130406;130407;130408;130409;130410	130403			8	
FLENALAVSTK	1	Unmodified	1191.6499	0.6499385	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.179	54.222	2	0.00082922	47636	160511_QHF_FH_JSI9i_2	79.659	65.452			0.33017	0.32612	19.66	4	4	Median	0.33583	0.28507	NaN	1	1	Median	0.36634	0.45226	NaN	1	1	Median	0.32461	0.32293	NaN	1	1	Median	0.29271	0.32934	NaN	1	1	Median	318700000	253390000	65311000	54926000	44361000	10565000	77709000	64475000	13234000	100260000	79979000	20277000	85811000	64575000	21236000	15958	485	15135	96681;96682;96683;96684	130411;130412;130413;130414	130412			4	
FLENGSQEDLLHGNPGSTYLASNSTSAPNWK	1	Unmodified	3333.5538	0.55381287	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	77.931	77.395	3;4	4.2718E-51	69126	160511_QHF_FH_JSI11i_3	176.9	161.85			0.95103	1.008	12.863	8	0	Median	0.94897	0.8245	NaN	1	0	Median	0.84993	1.0443	15.115	2	0	Median	1.0481	1.0451	13.772	3	0	Median	0.97988	1.0419	9.7908	2	0	Median	529430000	261200000	268230000	45492000	24534000	20957000	117330000	66000000	51334000	231320000	113820000	117500000	135280000	56853000	78429000	15959	3250	15136	96685;96686;96687;96688;96689;96690;96691;96692	130415;130416;130417;130418;130419;130420;130421;130422;130423;130424;130425;130426;130427;130428;130429;130430;130431;130432;130433;130434	130418			20	
FLENHEK	1	Unmodified	915.44503	0.4450311	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.054	7.8569	2	0.020023	5473	160511_QHF_FH_JSI11i_2	60.972	41.495			1.0739	1.0576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0739	1.0576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82492000	39876000	42616000	0	0	0	0	0	0	82492000	39876000	42616000	0	0	0	15960	521	15137	96693	130435	130435			1	
FLENHEKMTSTTR	1	Acetyl (K)	1634.7723	0.77225526	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		35.474	26.067	3	0.00017261	14572	160513_QHF_FH_JSI11Kac_6	89.507	79.728			3.5449	3.4643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5449	3.4643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26413000	7625900	18787000	0	0	0	0	0	0	26413000	7625900	18787000	0	0	0	15961	521	15138	96694	130436	130436	269		1	
FLENVAAAETEK	1	Unmodified	1320.6561	0.65614609	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	44.88	44.142	2	6.6198E-07	38070	160511_QHF_FH_JSI11i_2	105.46	85.131			0.74611	0.78862	94.169	4	4	Median	NaN	NaN	NaN	0	0	Median	0.18455	0.21715	NaN	1	1	Median	2.0744	2.1582	NaN	1	1	Median	0.74611	0.78862	5.8753	2	2	Median	134570000	76790000	57778000	0	0	0	42701000	37395000	5306100	36486000	8965400	27521000	55381000	30429000	24951000	15962	5696	15139	96695;96696;96697;96698;96699;96700	130437;130438;130439;130440;130441;130442	130442			6	
FLEPTLR	0	Unmodified	874.49125	0.49125301	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		43.684	42.96	2	0.0082634	37865	160511_QHF_FH_JSI10i_2	73.039	18.514			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15963	1064	15140	96701;96702	130443;130444	130444			2	
FLEQQNK	1	Unmodified	905.46068	0.46068117	51;71;53;913;83;79;57;45;54;78;52;80;44	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q61726;CON__P08729;CON__Q3KNV1;P08729;P08670;CON__O43790;CON__Q14533;CON__P78386;O43790;P78386;CON__Q6NT21;CON__P78385;P78385;Q14533;CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7	KRT8;KRT7;VIM;KRT86;KRT85;KRT83;KRT81;KRT75;KRT3;KRT76;KRT5;KRT79;KRT84	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Vimentin;Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb5;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cuticular Hb4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.26	5	4	5				2	2		4	4	6	4	12.546	10.188	2	0.00077277	8359	160511_QHF_FH_JSI11i_2	128.75	18.219		+	0.70392	0.76534	57.65	17	10	Median	0.73977	0.62307	71.115	4	3	Median	0.97707	1.1586	71.622	4	3	Median	0.78807	0.77706	58.804	6	3	Median	0.70392	0.73961	20.021	3	1	Median	30842000000	15823000000	15020000000	7464500000	3556100000	3908400000	7528900000	4146600000	3382200000	8430100000	4300700000	4129400000	7418700000	3819200000	3599600000	15964	51;53;71;913;44;45;52;54;57;78;79;80;83	15141	96703;96704;96705;96706;96707;96708;96709;96710;96711;96712;96713;96714;96715;96716;96717;96718;96719;96720	130445;130446;130447;130448;130449;130450;130451;130452;130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466;130467	130463			23	
FLEQQNKMLETK	2	Acetyl (K)	1549.781	0.78102903	51;83	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9DCV7	KRT8	Keratin, type II cytoskeletal 8	no	no	1	0	0	1			By MS/MS		14	0							1					1		60.654	49.619	2	0.023427	28279	160513_QHF_FH_JSI11Kac_4	56.359	31.977		+	0.18907	0.17336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18907	0.17336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1483500	1343700	139800	0	0	0	0	0	0	1483500	1343700	139800	0	0	0	15965	51;83	15142	96721	130468	130468	23;24		1	
FLEQQNQVLQTK	1	Unmodified	1474.778	0.77799256	810;63;82	P04264;CON__P04264;CON__Q6NXH9;CON__P35908v2;CON__P35908;P35908	KRT1;KRT2	Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	42.589	41.837	2	1.9486E-06	37084	160511_QHF_FH_JSI9i_1	121.02	92.063		+	0.36338	0.34419	86.24	2	2	Median	0.23313	0.18705	NaN	1	1	Median	0.5664	0.63334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98517000	54310000	44207000	38981000	31978000	7002900	33040000	22332000	10708000	0	0	0	26496000	0	26496000	15966	810;82;63	15143	96722;96723;96724	130469;130470;130471	130471			3	
FLEQVHQLYDDSFPMEIR	0	Unmodified	2266.0729	0.072853952	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			91.346	90.934	3	0.00043422	80022	160511_QHF_FH_JSI9i_2	58.159	48.895			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15967	1528	15144	96725;96726	130472;130473	130472			2	
FLESHLDDAEPYLLTMAK	1	Unmodified	2092.0187	0.018693117	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		89.309	88.77	3	0.058325	78166	160511_QHF_FH_JSI11i_2	22.874	14.484			0.36664	0.3661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36664	0.3661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18424000	13121000	5302500	0	0	0	0	0	0	18424000	13121000	5302500	0	0	0	15968	2682	15145	96727	130474	130474			1	
FLESLPEEEQQR	0	Unmodified	1503.7205	0.72053726	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	2	2	48.223	47.403	2	1.2292E-38	42753	160511_QHF_FH_JSI10i_1	180.67	144.25			1.0991	1.2141	27.069	6	3	Median	0.99435	0.83183	NaN	1	0	Median	1.1238	1.3453	21.885	2	1	Median	1.8169	1.7901	NaN	1	1	Median	1.0991	1.1962	9.4679	2	1	Median	747590000	358490000	389100000	62494000	28240000	34254000	210410000	101510000	108900000	137030000	55866000	81165000	337650000	172870000	164780000	15969	1117	15146	96728;96729;96730;96731;96732;96733;96734;96735	130475;130476;130477;130478;130479;130480;130481;130482;130483	130480			9	
FLESLPEEEQQRVLGEEK	1	Unmodified	2159.0746	0.074628091	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	62.977	62.183	3	0.0017106	55197	160511_QHF_FH_JSI10i_2	51.235	26.442			1.0466	1.0789	18.434	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0466	1.0789	18.434	2	1	Median	84621000	33057000	51565000	0	0	0	0	0	0	0	0	0	84621000	33057000	51565000	15970	1117	15147	96736;96737;96738	130484;130485;130486	130485			3	
FLESPDFQPNIAK	1	Unmodified	1504.7562	0.75619449	2570;2394	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	67.431	66.69	2	1.0596E-15	57239	160511_QHF_FH_JSI12i_2	194.54	140.38			0.94388	0.89951	16.768	8	0	Median	1.107	0.92647	12.224	2	0	Median	0.89395	1.0788	26.536	2	0	Median	1.0072	1.0094	24.309	2	0	Median	0.81295	0.87683	4.4473	2	0	Median	1164000000	604710000	559320000	205920000	95911000	110010000	267680000	156580000	111100000	355360000	165230000	190120000	335080000	186980000	148090000	15971	2570;2394	15148	96739;96740;96741;96742;96743;96744;96745;96746	130487;130488;130489;130490;130491;130492;130493;130494;130495;130496;130497;130498;130499;130500;130501	130489			15	
FLESPDFQPSIAK	1	Unmodified	1477.7453	0.74529545	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	67.966	67.278	2	0.00046142	61231	160511_QHF_FH_JSI11i_1	91.701	65.187			1.0194	1.0116	24.448	4	4	Median	1.1494	1.0343	NaN	1	1	Median	0.50871	0.62544	NaN	1	1	Median	1.0713	1.022	NaN	1	1	Median	0.97004	1.0013	NaN	1	1	Median	153640000	80757000	72882000	47941000	25557000	22384000	41784000	26722000	15061000	39901000	17900000	22002000	24013000	10578000	13435000	15972	2640	15149	96747;96748;96749;96750	130502;130503;130504;130505	130502			4	
FLESQEFQPSIAK	1	Unmodified	1522.7668	0.76675917	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	61.46	60.661	2	0.00014316	52775	160511_QHF_FH_JSI11i_2	143	119.64			0.49425	0.56202	50.663	4	4	Median	NaN	NaN	NaN	0	0	Median	0.47894	0.58512	NaN	1	1	Median	0.86749	0.89807	71.984	2	2	Median	0.47047	0.51386	NaN	1	1	Median	129940000	80478000	49464000	0	0	0	39106000	29085000	10021000	72330000	39011000	33320000	18507000	12383000	6123600	15973	2735	15150	96751;96752;96753;96754;96755	130506;130507;130508;130509;130510;130511;130512	130510			7	
FLESTDSFNNELK	1	Unmodified	1542.7202	0.72020291	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	2	1	3	59.22	58.247	2	8.6722E-06	51955	160511_QHF_FH_JSI9i_1	175.15	154.85			0.76336	0.44136	51.193	6	6	Plateau	0.99822	0.83335	89.887	2	2	Median	0.38094	0.46304	NaN	1	1	Median	0.93001	0.92311	NaN	1	1	Median	0.82292	0.88965	39.881	2	2	Median	551980000	333990000	217990000	137770000	84275000	53495000	37113000	31249000	5864000	43581000	20556000	23025000	333510000	197910000	135600000	15974	3936	15151	96756;96757;96758;96759;96760;96761;96762;96763	130513;130514;130515;130516;130517;130518;130519;130520;130521	130517			9	
FLESVEGNQNYPLLLLTLLEK	1	Unmodified	2432.3203	0.32027809	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		8	4						8	5	5	6	4	101.78	98.2	2;3	0	51999	160513_QHF_FH_JSI11Kac_6	395.71	386.89			0.99991	1.0243	12.331	18	2	Median	1.0808	0.93267	9.7509	5	2	Median	0.82253	0.99113	14.05	4	0	Median	1.1525	1.1007	13.372	5	0	Median	0.97802	1.057	3.6274	4	0	Median	3828900000	1808900000	2020000000	1168100000	499210000	668900000	884170000	467550000	416620000	1069500000	492170000	577350000	707070000	349960000	357110000	15975	1844	15152	96764;96765;96766;96767;96768;96769;96770;96771;96772;96773;96774;96775;96776;96777;96778;96779;96780;96781;96782;96783	130522;130523;130524;130525;130526;130527;130528;130529;130530;130531;130532;130533;130534;130535;130536;130537;130538;130539;130540;130541;130542;130543;130544;130545;130546;130547;130548;130549;130550;130551;130552;130553;130554;130555;130556	130532			35	
FLESYATDNEK	1	Unmodified	1315.5932	0.59321148	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.948	33.655	2	0.00085306	30057	160511_QHF_FH_JSI10i_1	79.201	43.757			1.0969	1.178	3.1765	2	1	Median	NaN	NaN	NaN	0	0	Median	1.026	1.2048	NaN	1	1	Median	1.1726	1.1518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	208740000	90128000	118620000	0	0	0	88299000	36885000	51414000	120450000	53243000	67203000	0	0	0	15976	4565	15153	96784;96785	130557;130558	130558			2	
FLETPLLSNVISLLHTLWVTNLGDK	1	Unmodified	2822.5582	0.55821695	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.14	98.416	3	1.967E-129	58248	160513_QHF_FH_JSI10Kac_6	247.54	214.52			0.38914	0.46394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.38914	0.46394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121970000	73713000	48253000	0	0	0	121970000	73713000	48253000	0	0	0	0	0	0	15977	405	15154	96786	130559;130560	130560			2	
FLETVELQISLK	1	Unmodified	1418.8021	0.80208205	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	90.025	89.487	2	0.00068024	78577	160511_QHF_FH_JSI11i_2	80.596	54.937			0.77215	0.75048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77215	0.75048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14150000	8323000	5826800	0	0	0	0	0	0	14150000	8323000	5826800	0	0	0	15978	2036	15155	96787;96788;96789	130561;130562;130563	130562			3	
FLEVDEYPEHIK	1	Unmodified	1517.7402	0.74021007	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	56.303	54.936	3	7.5783E-06	48417	160511_QHF_FH_JSI10i_2	88.021	76.915			0.87897	0.99356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87897	0.99356	NaN	1	0	Median	50551000	25596000	24955000	0	0	0	0	0	0	0	0	0	50551000	25596000	24955000	15979	4152	15156	96790;96791	130564;130565;130566	130566			3	
FLFDSVSSQNVGLR	0	Unmodified	1567.7995	0.79945628	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.62		8	4					3	6	4	5	5	7	79.609	75.133	2;3	1.6581E-16	38656	160513_QHF_FH_JSI9Kac_6	181.68	147.3			0.81381	0.89358	43.844	20	10	Median	0.84659	0.72658	25.143	4	3	Median	0.67109	0.81732	63.858	4	2	Median	0.83734	0.83415	28.543	5	1	Median	0.89012	0.99963	45.221	7	4	Median	2170000000	1147400000	1022600000	415040000	189460000	225570000	550120000	352220000	197900000	560710000	302770000	257940000	644140000	302980000	341160000	15980	127	15157	96792;96793;96794;96795;96796;96797;96798;96799;96800;96801;96802;96803;96804;96805;96806;96807;96808;96809;96810;96811;96812	130567;130568;130569;130570;130571;130572;130573;130574;130575;130576;130577;130578;130579;130580;130581;130582;130583;130584;130585	130579			19	
FLFEGQR	0	Unmodified	895.4552	0.45520186	2053	P63165;G2XKQ0	SUMO1	Small ubiquitin-related modifier 1;Small ubiquitin-related modifier	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.983	42.301	2	0.0062019	36242	160511_QHF_FH_JSI11i_2	92.692	66.584			1.2177	1.1257	21.29	6	1	Median	1.1675	1.0057	NaN	1	0	Median	0.83957	1.0405	NaN	1	0	Median	1.328	1.3182	11.193	2	1	Median	1.1217	1.1966	38.478	2	0	Median	2289500000	965790000	1323700000	353380000	132980000	220400000	417480000	215490000	201990000	868510000	349670000	518840000	650140000	267650000	382490000	15981	2053	15158	96813;96814;96815;96816;96817;96818	130586;130587;130588;130589;130590;130591;130592;130593;130594;130595	130592			10	
FLFENQTPAHVYYR	0	Unmodified	1783.8682	0.86820455	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	1	4	4	63.008	62.503	2;3	6.5129E-08	53699	160511_QHF_FH_JSI12i_3	139.86	127.37			1.3728	1.3711	21.844	10	7	Median	1.2395	1.0688	17.825	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3714	1.3711	19.017	4	3	Median	1.4178	1.4612	23.282	4	3	Median	737280000	306160000	431130000	50773000	23027000	27746000	0	0	0	402960000	153090000	249880000	283550000	130050000	153500000	15982	238	15159	96819;96820;96821;96822;96823;96824;96825;96826;96827;96828;96829	130596;130597;130598;130599;130600;130601;130602;130603;130604;130605;130606;130607;130608	130605			12	
FLFGGLAGMGATVFVQPLDLVK	1	Unmodified	2279.2388	0.23879707	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	99.639	91.205	3	1.1636E-12	55059	160513_QHF_FH_JSI10Kac_6	104.89	81.241			1.0095	1.0232	29.995	4	1	Median	1.3392	1.1476	NaN	1	1	Median	0.76103	0.91225	NaN	1	0	Median	1.4639	1.3811	NaN	1	0	Median	0.64431	0.68947	NaN	1	0	Median	430030000	233950000	196070000	88359000	35210000	53148000	141360000	91203000	50160000	158000000	81756000	76248000	42302000	25786000	16516000	15983	2198	15160	96830;96831;96832;96833	130609;130610;130611;130612	130612			4	
FLFGIYQQAEK	1	Unmodified	1342.6921	0.69213767	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.62		3	6						7	4	3	5	4	77.126	73.103	2	3.4211E-14	38034	160513_QHF_FH_JSI9Kac_6	160.16	113.74			0.8085	0.69808	73.947	15	14	Median	0.90041	0.7433	52.586	4	3	Median	0.89469	1.0431	115.36	2	2	Median	0.68914	0.69808	93.624	5	5	Median	0.91254	0.95158	77.944	4	4	Median	1388900000	714830000	674020000	313230000	164360000	148870000	97976000	53127000	44849000	548010000	283470000	264550000	429630000	213870000	215760000	15984	984	15161	96834;96835;96836;96837;96838;96839;96840;96841;96842;96843;96844;96845;96846;96847;96848;96849	130613;130614;130615;130616;130617;130618;130619;130620;130621;130622;130623;130624;130625;130626;130627;130628	130622			15	
FLFHGFR	0	Unmodified	922.48136	0.48135703	968	P10398	ARAF	Serine/threonine-protein kinase A-Raf	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	16	0									3		1	1	1	61.79	52.46	3	0.060454	28564	160513_QHF_FH_JSI11Kac_6	14.776	11.52			1.0245	1.1365	3.8889	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96188	1.1365	NaN	1	0	Median	1.2199	1.2138	NaN	1	0	Median	1.0245	1.1331	NaN	1	0	Median	27639000	12808000	14831000	0	0	0	18632000	8731300	9900400	4892200	1891500	3000800	4115300	2185700	1929600	15985	968	15162	96850;96851;96852	130629	130629			1	
FLFLLLGPAGK	1	Unmodified	1174.7114	0.71141655	5740	Q9Y6M7	SLC4A7	Sodium bicarbonate cotransporter 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.601	87.207	2	5.0954E-12	46979	160513_QHF_FH_JSI12Kac_6	147.52	127			19.847	21.105	88.177	4	4	Median	10.85	9.2286	NaN	1	1	Median	10.639	12.794	NaN	1	1	Median	36.303	34.812	NaN	1	1	Median	59.337	62.052	NaN	1	1	Median	1298100000	634300000	663780000	316090000	172410000	143690000	288820000	160280000	128540000	484180000	201170000	283000000	208980000	100440000	108540000	15986	5740	15163	96853;96854;96855;96856;96857;96858;96859;96860	130630;130631;130632;130633;130634;130635;130636;130637	130634			8	
FLFLLLGPSSANMDYHEIGR	0	Unmodified	2279.1409	0.14087394	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	94.445	86.26	3	2.0833E-32	50617	160513_QHF_FH_JSI10Kac_6	156.73	141.8			0.88248	0.92144	100.26	3	3	Median	NaN	NaN	NaN	0	0	Median	0.89892	1.0778	NaN	1	1	Median	0.18505	0.17644	NaN	1	1	Median	0.88248	0.92144	NaN	1	1	Median	560100000	281550000	278550000	0	0	0	308340000	102450000	205890000	128710000	117790000	10923000	123040000	61311000	61732000	15987	820	15164	96861;96862;96863;96864	130638;130639;130640;130641	130641			4	
FLFLLLGPSSANMDYHEIGR	0	Oxidation (M)	2295.1358	0.13578856	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			91.327	85.607	3	0.00031587	48843	160513_QHF_FH_JSI10Kac_6	84.499	62.064			0.29258	0.34762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29258	0.34762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44018000	31990000	12028000	0	0	0	44018000	31990000	12028000	0	0	0	0	0	0	15988	820	15164	96865	130642	130642		345	1	
FLFLVSTFDWK	1	Unmodified	1401.7333	0.7332742	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	97.365	88.025	2	1.9422E-10	50266	160513_QHF_FH_JSI11Kac_6	125.48	81.171			0.9645	0.92073	97.531	4	3	Median	2.0108	1.7401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0682	1.0252	142.54	2	2	Median	0.46263	0.48718	NaN	1	0	Median	381690000	177520000	204170000	84982000	20796000	64185000	0	0	0	222660000	106160000	116500000	74051000	50565000	23486000	15989	4749	15165	96866;96867;96868;96869;96870	130643;130644;130645;130646;130647	130644			5	
FLFNLPLNIER	0	Unmodified	1374.766	0.76597131	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		101.56	101.48	2	0.0052469	84073	160511_QHF_FH_JSI10i_3	76.465	36.113			1.0232	1.0684	1.4332	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91632	1.0577	NaN	1	0	Median	1.1426	1.0793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121090000	68142000	52952000	0	0	0	67061000	40333000	26728000	54033000	27809000	26224000	0	0	0	15990	4159	15166	96871;96872	130648	130648			0	
FLFPFFDSAYQGFASGNLER	0	Unmodified	2312.0902	0.090218576	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	1	2	3	3	99.989	95.614	2;3	4.264E-43	89350	160511_QHF_FH_JSI12i_3	142.58	134.68			0.76972	0.84781	25.889	8	2	Median	1.5988	1.3603	NaN	1	0	Median	0.7439	0.88969	3.5109	2	1	Median	0.88516	0.83805	10.053	2	1	Median	0.56256	0.57308	21.125	3	0	Plateau	901820000	491320000	410500000	122720000	47383000	75334000	229550000	144210000	85339000	291950000	128330000	163620000	257600000	171390000	86206000	15991	1111	15167	96873;96874;96875;96876;96877;96878;96879;96880;96881	130649;130650;130651;130652;130653;130654;130655;130656;130657;130658	130653			10	
FLFSLFGQK	1	Unmodified	1085.591	0.59096706	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.44		4	8						7	6	6	4	3	93.778	90.623	2	1.0924E-32	42984	160513_QHF_FH_JSI12Kac_6	194.27	167.67			0.83955	0.87706	91.511	19	17	Median	1.2	1.0219	87.044	6	5	Median	0.7232	0.85193	90.957	6	6	Median	1.2151	1.142	112.87	4	4	Median	0.83955	0.87706	125.57	3	2	Median	13904000000	6776200000	7127400000	3291200000	1630600000	1660600000	4004000000	2182500000	1821500000	3844900000	1583600000	2261200000	2763500000	1379400000	1384100000	15992	2362	15168	96882;96883;96884;96885;96886;96887;96888;96889;96890;96891;96892;96893;96894;96895;96896;96897;96898;96899;96900	130659;130660;130661;130662;130663;130664;130665;130666;130667;130668;130669;130670;130671;130672;130673;130674;130675;130676;130677;130678;130679;130680;130681;130682;130683;130684;130685;130686;130687;130688;130689;130690;130691	130689			33	
FLFTTGFHTK	1	Unmodified	1197.6182	0.61824444	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.51		1	9						8	4	5	4	5	63.573	59.404	2;3	4.8713E-07	32372	160513_QHF_FH_JSI11Kac_6	120.36	102.5			0.90598	0.90966	36.332	15	7	Median	1.0488	0.88444	44.327	4	2	Median	0.71978	0.81468	14.555	5	2	Median	0.98659	0.92819	2.6566	2	0	Median	0.76204	0.79572	61.732	4	3	Median	1142600000	601580000	540980000	237240000	105420000	131820000	266780000	157740000	109040000	229620000	130840000	98775000	408930000	207590000	201340000	15993	3921	15169	96901;96902;96903;96904;96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915;96916;96917;96918	130692;130693;130694;130695;130696;130697;130698;130699;130700;130701;130702;130703;130704;130705;130706;130707;130708;130709;130710;130711;130712;130713;130714;130715;130716;130717	130700			26	
FLFVDADQIVR	0	Unmodified	1321.703	0.7030367	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.008	88.401	2	0.00016529	77649	160511_QHF_FH_JSI11i_2	82.749	41.301			1.0174	1.0894	7.9242	4	0	Median	1.3999	1.2592	NaN	1	0	Median	0.89896	1.0985	NaN	1	0	Median	1.1097	1.0803	NaN	1	0	Median	0.93276	1.0562	NaN	1	0	Median	224170000	111490000	112680000	47957000	19240000	28717000	39605000	22095000	17511000	81714000	42168000	39546000	54897000	27986000	26911000	15994	5135	15170	96919;96920;96921;96922	130718;130719;130720;130721;130722;130723;130724;130725	130722			8	
FLGATTDTTVLEANAVLLGIQESK	1	Unmodified	2490.3217	0.32173465	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	101.73	101.61	3	4.696E-15	87494	160511_QHF_FH_JSI12i_2	113.24	105.99			0.80379	0.99376	34.04	3	1	Median	NaN	NaN	NaN	0	0	Median	0.80379	0.99681	NaN	1	0	Median	0.54705	0.55195	NaN	1	1	Median	0.89631	0.99376	NaN	1	0	Median	304400000	186770000	117640000	0	0	0	67032000	31243000	35789000	133280000	102700000	30587000	104090000	52829000	51259000	15995	5528	15171	96923;96924;96925	130726;130727	130726			2	
FLGDEQDQITFVTR	0	Unmodified	1667.8155	0.81550028	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	71.063	70.354	2	2.3586E-15	63770	160511_QHF_FH_JSI10i_1	198.55	172.5			0.98934	1.0147	9.5693	8	0	Median	1.1586	0.95747	10.813	2	0	Median	0.83077	0.99794	20.931	2	0	Median	1.0374	1.0263	4.2181	2	0	Median	0.937	1.0164	3.4186	2	0	Median	473820000	235960000	237870000	83414000	32972000	50442000	138960000	79031000	59929000	130830000	57886000	72943000	120620000	66069000	54552000	15996	3290	15172	96926;96927;96928;96929;96930;96931;96932;96933	130728;130729;130730;130731;130732;130733;130734;130735;130736;130737;130738;130739;130740;130741;130742	130734			15	
FLGDIEVWDQAEK	1	Unmodified	1548.746	0.74602373	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	2	1	3	81.061	80.273	2;3	3.4445E-10	73167	160511_QHF_FH_JSI12i_1	174.4	142.91			1.1572	1.173	22.648	8	3	Median	1.1572	0.96466	0.40469	2	0	Median	0.84574	1.0162	22.34	2	1	Median	1.5559	1.5914	NaN	1	1	Median	1.2482	1.4058	13.973	3	1	Median	2016600000	975980000	1040600000	367210000	153410000	213810000	504340000	290910000	213430000	432400000	180190000	252210000	712630000	351470000	361160000	15997	1282	15173	96934;96935;96936;96937;96938;96939;96940;96941	130743;130744;130745;130746;130747;130748;130749;130750;130751;130752;130753	130746			11	
FLGETDFAK	1	Unmodified	1026.5022	0.50221163	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	48.326	47.099	2	0.00093808	41242	160511_QHF_FH_JSI9i_2	76.478	44.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15998	1360	15174	96942;96943	130754;130755	130755			2	
FLGFFMVPAQSSWNYNFMGVR	0	2 Oxidation (M)	2529.161	0.16095745	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	95.407	86.803	3	9.4373E-17	48854	160513_QHF_FH_JSI11Kac_6	125.45	119.36			1.3284	1.4841	46.779	5	4	Median	2.6843	2.3137	NaN	1	1	Median	1.2793	1.4841	NaN	1	1	Median	1.3284	1.261	NaN	1	0	Median	1.3536	1.4317	81.102	2	2	Median	463140000	184490000	278640000	108000000	26854000	81149000	116170000	55461000	60708000	80890000	36356000	44533000	158070000	65821000	92253000	15999	3101	15175	96944;96945;96946;96947;96948	130756;130757;130758;130759;130760;130761	130757		2192;2193	6	
FLGFFMVPAQSSWNYNFMGVR	0	Oxidation (M)	2513.166	0.16604283	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	2	1	97.007	88.633	2;3	2.537E-59	50253	160513_QHF_FH_JSI9Kac_6	198.14	186.45			1.0153	1.0201	22.944	8	2	Median	1.1293	0.96682	17.341	3	1	Plateau	0.74957	0.88381	28.34	2	1	Median	1.1044	1.0506	39.16	2	0	Median	0.90212	0.95299	NaN	1	0	Median	1743700000	848640000	895070000	680520000	308080000	372440000	489830000	261810000	228020000	306300000	157210000	149090000	267050000	121540000	145520000	16000	3101	15175	96949;96950;96951;96952;96953;96954;96955;96956	130762;130763;130764;130765;130766;130767;130768	130763		2192;2193	7	
FLGFFMVPAQSSWNYNFMGVR	0	Unmodified	2497.1711	0.17112821	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	98.193	90.066	2;3	3.5532E-89	50929	160513_QHF_FH_JSI11Kac_6	294.81	280.37			1.1116	0.97327	47.351	9	4	Median	1.1214	0.9613	1.7491	2	0	Median	0.98011	1.1498	73.501	3	2	Median	0.95089	0.90232	27.394	2	1	Median	0.94999	1.0051	73.791	2	1	Median	7172000000	3803500000	3368600000	1241700000	651000000	590680000	4432700000	2419100000	2013600000	997210000	459140000	538070000	500390000	274180000	226210000	16001	3101	15175	96957;96958;96959;96960;96961;96962;96963;96964;96965	130769;130770;130771;130772;130773;130774;130775;130776;130777;130778;130779;130780;130781;130782	130770			14	
FLGHAQMFGNIK	1	Unmodified	1361.6914	0.69142616	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	52.662	51.753	2	5.1192E-05	42587	160511_QHF_FH_JSI9i_3	109.71	88.844			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15965000	8509400	7455700	7455700	0	7455700	0	0	0	0	0	0	8509400	8509400	0	16002	162	15176	96966;96967	130783;130784	130783			2	
FLGHAQMFGSFK	1	Unmodified	1368.6649	0.66487706	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.589	57.462	3	0.00081041	49386	160511_QHF_FH_JSI12i_3	64.827	57.102			0.42269	0.4162	30.865	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55331	0.51771	NaN	1	1	Median	0.3229	0.33459	NaN	1	1	Median	67956000	52941000	15015000	0	0	0	0	0	0	28977000	27347000	1630200	38979000	25594000	13385000	16003	135	15177	96968;96969	130785;130786	130786			2	
FLGMHPCER	0	Unmodified	1145.511	0.51101895	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			27.812	26.503	3	0.0026231	21902	160511_QHF_FH_JSI10i_3	60.102	58.691			0.59541	0.68461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59541	0.68461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71961000	46118000	25843000	0	0	0	71961000	46118000	25843000	0	0	0	0	0	0	16004	5708	15178	96970	130787	130787			1	
FLGNAPCGHYTFK	1	Unmodified	1510.7027	0.70271913	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	44.407	44.029	2;3	5.8836E-05	36929	160511_QHF_FH_JSI10i_3	67.93	63.382			1.075	1.0584	53.579	6	4	Median	NaN	NaN	NaN	0	0	Median	1.657	1.8638	NaN	1	0	Median	0.72429	0.6777	67.216	2	2	Median	0.98637	1.0277	33.823	3	2	Median	1041700000	452440000	589250000	0	0	0	130960000	46107000	84857000	319440000	180460000	138980000	591290000	225880000	365410000	16005	4684	15179	96971;96972;96973;96974;96975;96976;96977	130788;130789;130790;130791;130792;130793;130794	130790			7	
FLGSDEEDK	1	Unmodified	1038.4506	0.45056999	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				18.947	17.817	2	0.02921	14940	160511_QHF_FH_JSI9i_1	40.352	29.66			1.6414	1.3489	NaN	1	0	Median	1.6414	1.3489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62270000	25844000	36426000	62270000	25844000	36426000	0	0	0	0	0	0	0	0	0	16006	4284	15180	96978	130795	130795			1	
FLGSDEEDKDSLQELSTEQK	2	Unmodified	2297.0547	0.05468051	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.913	55.257	3	5.1285E-05	50065	160511_QHF_FH_JSI11i_1	80.752	57.423			1.0297	0.89659	40.877	4	4	Median	1.0076	0.8128	NaN	1	1	Median	0.62134	0.74556	NaN	1	1	Median	1.0524	0.98901	NaN	1	1	Median	1.7675	1.844	NaN	1	1	Median	176870000	76002000	100860000	20384000	8439000	11945000	64563000	41523000	23040000	50777000	14447000	36330000	41142000	11593000	29549000	16007	4284	15181	96979;96980;96981;96982	130796;130797;130798;130799	130796			4	
FLGSGGFIGYAPNLSK	1	Unmodified	1626.8406	0.84059282	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	81.825	81.004	2	1.4508E-21	70511	160511_QHF_FH_JSI12i_3	172.09	146.15			0.8288	0.82247	55.172	5	3	Median	2.9449	2.518	NaN	1	1	Median	1.0433	1.2068	55.186	2	2	Median	0.8288	0.74845	NaN	1	0	Median	0.82613	0.82247	NaN	1	0	Median	142920000	73011000	69913000	7482300	2117900	5364400	22438000	12673000	9765300	52255000	28003000	24251000	60749000	30217000	30532000	16008	2194	15182	96983;96984;96985;96986;96987	130800;130801;130802;130803;130804;130805;130806;130807	130807			8	
FLGSGPR	0	Unmodified	732.39187	0.39187332	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	15.622	15.058	2	9.1411E-06	12621	160511_QHF_FH_JSI10i_2	148.28	96.05			0.83974	0.90632	36.216	8	0	Median	1.9127	1.5978	30.79	2	0	Median	0.89783	1.0616	22.053	2	0	Median	0.79224	0.78852	19.375	2	0	Median	0.70429	0.74213	0.068787	2	0	Median	7166500000	3548900000	3617600000	1222200000	377160000	845050000	1522400000	792720000	729650000	2217300000	1081400000	1135800000	2204600000	1297600000	907030000	16009	887	15183	96988;96989;96990;96991;96992;96993;96994;96995	130808;130809;130810;130811;130812;130813;130814;130815;130816;130817	130815			10	
FLGSNDEEMSYDNNPYIR	0	Unmodified	2162.9215	0.92149827	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	66.664	66.041	2;3	5.5835E-07	60149	160511_QHF_FH_JSI12i_1	117.07	103.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16010	1183	15184	96996;96997	130818;130819	130818			2	
FLGTEPEPDAVGLDSGHIR	0	Unmodified	2008.9854	0.98541915	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	2	3	61.787	60.966	2;3	6.5275E-33	53645	160511_QHF_FH_JSI9i_2	186.96	181.38			1.1512	1.1821	50.135	7	3	Median	1.2696	1.0897	NaN	1	0	Median	0.78327	0.97264	NaN	1	0	Median	1.0626	1.0634	14.96	2	1	Median	2.4756	2.818	50.647	3	2	Median	1555900000	719930000	836000000	296250000	121450000	174790000	406100000	242470000	163620000	510560000	211100000	299460000	343030000	144910000	198120000	16011	2760	15185	96998;96999;97000;97001;97002;97003;97004	130820;130821;130822;130823;130824;130825;130826;130827;130828;130829;130830	130824			11	
FLGTSGQNVSDIFR	0	Unmodified	1539.7682	0.76815616	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.433	71.798	2	6.24E-22	62934	160511_QHF_FH_JSI11i_2	210.91	144.29			1.0591	1.0294	20.755	6	0	Median	1.1446	1.0029	NaN	1	0	Median	0.86564	1.0567	NaN	1	0	Median	1.2035	1.1733	22.214	2	0	Median	0.9993	1.0647	38.24	2	0	Median	757450000	357470000	399980000	103950000	43194000	60752000	161370000	83854000	77515000	248070000	107280000	140790000	244070000	123140000	120920000	16012	1638	15186	97005;97006;97007;97008;97009;97010	130831;130832;130833;130834;130835;130836;130837;130838;130839;130840;130841	130837			11	
FLGVAEQLHNEGFK	1	Unmodified	1587.8045	0.80454166	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.67		17	11						8	8	7	10	11	62.857	60.561	2;3	1.3547E-25	53499	160511_QHF_FH_JSI10i_2	231.83	201.58			0.4211	0.4124	214.35	29	29	Median	0.36425	0.30926	175.58	6	6	Median	0.4211	0.49326	206.38	5	5	Median	0.56904	0.5546	281.68	8	8	Median	0.6582	0.68951	208.39	10	10	Median	11682000000	6576100000	5106400000	1578800000	995860000	582980000	2556100000	1351000000	1205100000	4663700000	2353500000	2310200000	2883800000	1875700000	1008100000	16013	1372	15187	97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023;97024;97025;97026;97027;97028;97029;97030;97031;97032;97033;97034;97035;97036;97037;97038;97039;97040;97041;97042;97043;97044;97045;97046	130842;130843;130844;130845;130846;130847;130848;130849;130850;130851;130852;130853;130854;130855;130856;130857;130858;130859;130860;130861;130862;130863;130864;130865;130866;130867;130868;130869;130870;130871;130872;130873;130874;130875;130876;130877;130878;130879;130880;130881;130882;130883;130884;130885;130886;130887;130888;130889;130890	130876			49	
FLHDNMVEIPNR	0	Unmodified	1483.7242	0.72418285	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.776	50.658	3	0.030886	44644	160511_QHF_FH_JSI11i_3	43.544	29.881			0.82904	0.80048	2.1027	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8477	0.78867	NaN	1	0	Median	0.81079	0.81247	NaN	1	0	Median	191290000	107060000	84225000	0	0	0	0	0	0	98132000	54618000	43514000	93153000	52443000	40710000	16014	1694	15188	97047;97048	130891;130892	130891			0	
FLHFHSVTFWVGNAK	1	Unmodified	1788.91	0.91000979	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									21	4	8	4	5	79.207	71.361	2;3;4	1.4866E-144	39199	160513_QHF_FH_JSI10Kac_6	313.96	287.17			0.80663	0.95208	87.383	19	13	Median	0.7453	0.64066	58.262	4	3	Median	0.67454	0.80287	110.15	8	6	Median	1.9474	1.8474	49.55	3	2	Plateau	1.1765	1.2447	85.917	4	2	Median	5491000000	3206100000	2285000000	1181000000	660410000	520630000	3444700000	2143500000	1301200000	406490000	178910000	227580000	458830000	223280000	235550000	16015	1395	15189	97049;97050;97051;97052;97053;97054;97055;97056;97057;97058;97059;97060;97061;97062;97063;97064;97065;97066;97067;97068;97069	130893;130894;130895;130896;130897;130898;130899;130900;130901;130902;130903;130904;130905;130906;130907;130908;130909;130910;130911;130912;130913;130914;130915;130916;130917;130918;130919;130920;130921;130922;130923	130918			30	
FLHFPYLLTLQLK	1	Unmodified	1631.9439	0.94393568	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.146	84.795	2;3	3.3415E-41	47341	160513_QHF_FH_JSI9Kac_6	161.99	157.07			0.88501	0.91183	22.735	8	0	Median	1.0545	0.89438	8.3179	2	0	Median	0.83032	0.98285	2.1681	2	0	Median	0.7646	0.72643	26.562	2	0	Median	1.0312	1.0888	32.502	2	0	Median	3734300000	2059900000	1674400000	818100000	450730000	367370000	1329100000	803830000	525230000	967220000	529440000	437790000	619910000	275940000	343970000	16016	4152	15190	97070;97071;97072;97073;97074;97075;97076;97077	130924;130925;130926;130927;130928;130929;130930;130931;130932;130933;130934;130935;130936;130937;130938	130928			15	
FLHLLLDK	1	Unmodified	997.59605	0.59605244	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	65.313	64.492	3	0.0013143	57233	160511_QHF_FH_JSI11i_3	72.485	63.622			0.1327	0.12658	41.41	4	4	Median	0.14432	0.11709	NaN	1	1	Median	0.12201	0.14362	NaN	1	1	Median	0.14892	0.13685	NaN	1	1	Median	0.058453	0.058752	NaN	1	1	Median	101180000	92288000	8887600	17948000	15904000	2043300	16131000	14436000	1694600	20925000	19448000	1476900	46172000	42499000	3672800	16017	4181	15191	97078;97079;97080;97081	130939;130940;130941;130942;130943;130944;130945;130946	130940			8	
FLHLNTVQLSK	1	Unmodified	1298.7347	0.73467118	2885	Q5H8A4	PIGG	GPI ethanolamine phosphate transferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			56.705	55.154	3	0.00076384	45148	160511_QHF_FH_JSI9i_3	68.44	55.864			0.45417	0.44502	52.415	2	2	Median	0.38071	0.3072	NaN	1	1	Median	0.54179	0.64468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102860000	61298000	41561000	47958000	30400000	17559000	54900000	30898000	24002000	0	0	0	0	0	0	16018	2885	15192	97082;97083	130947;130948	130948			2	
FLHMLSNPVDLSNPAIISSTPK	1	Unmodified	2380.2461	0.24606729	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			91.659	91.233	3	9.4538E-05	80914	160511_QHF_FH_JSI10i_2	54.117	46.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16177000	16177000	0	0	0	0	16177000	16177000	0	0	0	0	0	0	0	16019	3367	15193	97084	130949	130949			1	
FLHNPDAAQGFVGCALSSTIQR	0	Unmodified	2388.1645	0.16446293	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	4.93		1	4						1	1	4	1		78.911	76.437	3	2.6463E-10	65244	160511_QHF_FH_JSI10i_3	112.64	103.48			0.97867	1.191	47.62	4	4	Median	2.2377	1.8162	NaN	1	1	Median	0.80442	0.97927	43.019	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241490000	125280000	116220000	59887000	15554000	44333000	181600000	109720000	71883000	0	0	0	0	0	0	16020	2374	15194	97085;97086;97087;97088;97089;97090	130950;130951;130952;130953;130954;130955;130956	130952			7	
FLHPEVTETMEK	1	Unmodified	1459.7017	0.70171607	1001	P11441	UBL4A	Ubiquitin-like protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	43.286	42.401	2;3	5.1803E-05	36387	160511_QHF_FH_JSI11i_2	93.623	81.83			0.43798	0.45789	56.181	6	6	Median	0.47237	0.41641	NaN	1	1	Median	0.40873	0.49758	6.6909	2	2	Median	0.4811	0.47913	11.476	2	2	Median	0.1153	0.12153	NaN	1	1	Median	272060000	186790000	85269000	32545000	21079000	11466000	89857000	65881000	23975000	132500000	88463000	44041000	17156000	11369000	5786700	16021	1001	15195	97091;97092;97093;97094;97095;97096	130957;130958;130959;130960;130961;130962	130960			6	
FLHPLLSSK	1	Unmodified	1040.6019	0.6018661	3072	Q6NUK4	REEP3	Receptor expression-enhancing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	42.411	41.869	2;3	0.0028392	35523	160511_QHF_FH_JSI12i_3	56.916	48.695			0.38027	0.36515	153.15	6	6	Median	0.092992	0.076169	NaN	1	1	Median	0.19191	0.21389	NaN	1	1	Median	1.2987	1.2152	150.72	2	2	Median	1.0059	1.0099	163.18	2	2	Median	356150000	175690000	180460000	27386000	23840000	3546100	39938000	29085000	10852000	108150000	46209000	61938000	180680000	76556000	104120000	16022	3072	15196	97097;97098;97099;97100;97101;97102;97103	130963;130964;130965;130966;130967;130968;130969	130969			7	
FLHQDIDSGQGIR	0	Unmodified	1484.7372	0.73719038	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5								1	3	4	34.419	34.205	2;3	9.0601E-07	29830	160511_QHF_FH_JSI11i_3	124.38	114.84			1.0585	1.301	92.726	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0585	1.301	NaN	1	1	Median	1.1334	1.0683	113.38	2	2	Median	1.141	1.1631	145.85	2	2	Median	556380000	262840000	293550000	0	0	0	134620000	62400000	72223000	251750000	129090000	122670000	170010000	71348000	98660000	16023	1005	15197	97104;97105;97106;97107;97108;97109;97110;97111	130970;130971;130972;130973;130974;130975;130976;130977;130978;130979	130972			10	
FLHTKNK	2	Acetyl (K)	928.51305	0.51305109	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		16.275	7.0273	2	0.054999	6046	160513_QHF_FH_JSI11Kac_6	63.48	34.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6578700	6578700	0	0	0	0	0	0	0	6578700	6578700	0	0	0	0	16024	133	15198	97112	130980	130980			1	
FLHTYSAATQDLQAK	1	Unmodified	1692.8471	0.84713476	3737	Q8TEQ8	PIGO	GPI ethanolamine phosphate transferase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	42.607	42.458	3	7.8207E-08	36292	160511_QHF_FH_JSI12i_3	133.04	121.4			0.30167	0.31369	84.102	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64578	0.61076	NaN	1	1	Median	0.70352	0.72325	118.14	2	2	Median	98290000	64336000	33954000	0	0	0	0	0	0	30973000	26050000	4922900	67317000	38286000	29031000	16025	3737	15199	97113;97114;97115	130981;130982;130983	130983			3	
FLIATGERPR	0	Unmodified	1158.6509	0.65094155	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		5.88	5.86		3	3						2	4	3	1		38.952	35.873	2;3	2.9273E-05	29020	160511_QHF_FH_JSI9i_3	76.228	69.787			1.0152	0.9927	29.945	8	1	Median	1.0915	0.91087	44.698	4	1	Median	0.80068	0.97082	3.727	3	0	Plateau	1.2034	1.1907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	562300000	251560000	310740000	289400000	112080000	177320000	246570000	124890000	121680000	26331000	14588000	11743000	0	0	0	16026	2778	15200	97116;97117;97118;97119;97120;97121;97122;97123	130984;130985;130986;130987;130988;130989;130990;130991	130986			8	
FLIDGFPR	0	Unmodified	963.5178	0.51780212	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	76.643	75.757	2	0.00023128	65504	160511_QHF_FH_JSI12i_2	119.89	98.733			1.1852	1.1335	15.571	7	0	Median	1.2888	1.0701	8.1478	2	0	Median	1.1269	1.3479	26.326	2	0	Median	1.2066	1.176	11.906	2	0	Median	0.9969	1.1437	NaN	1	0	Median	1579200000	762920000	816230000	270480000	120500000	149980000	349380000	171460000	177920000	654680000	323850000	330820000	304620000	147100000	157520000	16027	1342	15201	97124;97125;97126;97127;97128;97129;97130	130992;130993;130994;130995;130996;130997;130998;130999;131000;131001;131002;131003;131004;131005;131006;131007;131008;131009;131010;131011;131012;131013	130997			22	
FLIDNPSEK	1	Unmodified	1061.5393	0.53932542	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.366	45.97	2	0.012251	39348	160511_QHF_FH_JSI12i_2	47.869	37.061			0.86796	0.99115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86796	0.99115	NaN	1	0	Median	53395000	30376000	23019000	0	0	0	0	0	0	0	0	0	53395000	30376000	23019000	16028	5214	15202	97131	131014	131014			1	
FLIDTHNR	0	Unmodified	1014.5247	0.52467841	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	2	4	32.236	31.442	2;3	0.0012721	27734	160511_QHF_FH_JSI10i_2	64.734	42.774			0.96054	1.0243	19.159	10	1	Median	1.1392	0.99168	NaN	1	0	Median	0.99182	1.1698	12.796	3	0	Plateau	1.0723	1.0366	13.812	2	1	Median	0.93482	0.95257	24.623	4	0	Median	841430000	419000000	422430000	56793000	22927000	33866000	198860000	94576000	104290000	169130000	85858000	83273000	416650000	215640000	201010000	16029	3173	15203	97132;97133;97134;97135;97136;97137;97138;97139;97140;97141	131015;131016;131017;131018;131019;131020;131021;131022	131021			8	
FLIGLGK	1	Unmodified	746.46906	0.46906101	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	63.418	62.824	2	0.026724	55606	160511_QHF_FH_JSI10i_2	56.51	29.194			0.82433	0.8594	51.202	5	4	Median	NaN	NaN	NaN	0	0	Median	1.4559	1.8037	NaN	1	1	Median	1.2022	1.1838	57.906	2	2	Median	0.65954	0.70616	27.775	2	1	Median	96012000	49240000	46772000	0	0	0	14346000	6074900	8270600	49969000	25876000	24093000	31697000	17289000	14408000	16030	3505	15204	97142;97143;97144;97145;97146	131023;131024;131025;131026;131027	131026			5	
FLIHLSK	1	Unmodified	856.51707	0.51707383	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23			9						5	5	2	4	3	51.884	48.11	3	0.0025528	41755	160511_QHF_FH_JSI11i_3	77.058	68.717			1.0285	0.96407	76.341	12	12	Median	1.3431	1.0916	103.18	3	3	Plateau	0.93828	1.0791	104.67	2	2	Median	1.0285	0.96295	67.847	4	4	Median	2.0664	2.1684	79.903	3	3	Median	736790000	331510000	405290000	144230000	65659000	78571000	102190000	50667000	51525000	210610000	92528000	118080000	279760000	122650000	157110000	16031	5034	15205	97147;97148;97149;97150;97151;97152;97153;97154;97155;97156;97157;97158;97159;97160	131028;131029;131030;131031;131032;131033;131034;131035;131036;131037;131038;131039;131040;131041;131042;131043;131044	131028			17	
FLIIPLGSHPVAK	1	Unmodified	1390.8337	0.83365695	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	4	3	3	3	76.177	73.511	3	5.5256E-05	65998	160511_QHF_FH_JSI11i_3	78.324	75.761			0.77984	0.86692	54.471	12	5	Median	0.48867	0.41705	51.394	3	1	Median	0.79222	0.9469	25.556	3	1	Plateau	0.89656	0.88977	9.1245	3	0	Median	1.5852	1.676	84.114	3	3	Median	518980000	267150000	251820000	105020000	57830000	47194000	151000000	91514000	59486000	160600000	73088000	87517000	102350000	44719000	57628000	16032	3163	15206	97161;97162;97163;97164;97165;97166;97167;97168;97169;97170;97171;97172;97173	131045;131046;131047;131048;131049;131050;131051;131052;131053;131054;131055;131056;131057;131058;131059;131060;131061	131045			17	
FLIIPLHSLMPTVNQTQVFK	1	Unmodified	2325.2919	0.29189527	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	2	2	3	97.829	93.485	3	6.4049E-84	90604	160511_QHF_FH_JSI11i_3	251.35	232.81			0.75539	0.85308	49.739	10	5	Median	1.0387	0.87245	31.69	3	1	Median	0.79523	0.93741	14.486	2	1	Median	0.90179	0.85689	57.087	2	1	Median	0.67651	0.69636	73.041	3	2	Median	2326200000	1324600000	1001600000	294500000	150110000	144390000	788310000	458040000	330270000	505470000	256910000	248560000	737900000	459500000	278400000	16033	4681	15207	97174;97175;97176;97177;97178;97179;97180;97181;97182;97183	131062;131063;131064;131065;131066;131067;131068;131069;131070;131071;131072;131073	131062			11	
FLIIPLHSLMPTVNQTQVFK	1	Oxidation (M)	2341.2868	0.28680989	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	1	2	93.146	87.591	3	2.618E-14	83385	160511_QHF_FH_JSI10i_3	145.91	122.82			0.81174	0.88827	53.008	6	2	Median	0.69445	0.59803	NaN	1	0	Median	1.3616	1.584	75.605	2	1	Median	1.0041	0.95571	NaN	1	0	Median	0.76732	0.7747	13.153	2	1	Median	293230000	154810000	138420000	63022000	32858000	30164000	85157000	40344000	44813000	49601000	24573000	25028000	95450000	57034000	38416000	16034	4681	15207	97184;97185;97186;97187;97188;97189	131074;131075;131076;131077;131078;131079	131075		2512	6	
FLIIPLHSLMPTVNQTQVFKR	1	Unmodified	2481.393	0.3930063	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	89.17	81.783	4	1.644E-08	44915	160513_QHF_FH_JSI9Kac_6	139.17	111.85			0.27713	0.32979	100.47	3	3	Plateau	2.8161	2.4144	NaN	1	1	Median	0.40753	0.48182	53.615	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	323440000	192120000	131320000	50187000	13892000	36295000	262400000	178230000	84175000	0	0	0	10848000	0	10848000	16035	4681	15208	97190;97191;97192;97193	131080;131081;131082;131083	131080			4	
FLILLGSPK	1	Unmodified	986.61645	0.61645353	5493	Q9Y251	HPSE	Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		83.053	74.083	2	4.651E-06	40412	160513_QHF_FH_JSI9Kac_6	130.27	69.484			0.76358	0.70119	145.35	2	2	Median	2.2874	1.9597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2549	0.25089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50100000	24224000	25876000	24601000	5366400	19235000	0	0	0	25499000	18858000	6640700	0	0	0	16036	5493	15209	97194;97195	131084;131085	131085			2	
FLILPDMLK	1	Unmodified	1088.6304	0.63038903	2003	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.71	2	4	4						6	3	4	5	4	97.398	94.086	2	5.5022E-08	88561	160511_QHF_FH_JSI11i_2	143.12	131.35			0.92458	0.92984	38.285	16	4	Median	0.95163	0.81073	24.567	3	0	Median	0.73991	0.87515	26.974	4	0	Median	1.0013	0.98055	40.909	5	2	Median	0.91159	0.9658	60.16	4	2	Median	7203600000	3481900000	3721600000	1266000000	664560000	601410000	1735800000	920100000	815660000	2456600000	959480000	1497200000	1745200000	937810000	807390000	16037	2003	15210	97196;97197;97198;97199;97200;97201;97202;97203;97204;97205;97206;97207;97208;97209;97210;97211	131086;131087;131088;131089;131090;131091;131092;131093;131094;131095;131096;131097;131098;131099;131100;131101;131102;131103;131104;131105;131106;131107;131108;131109;131110	131101			25	
FLILQGEVEQIAMMK	1	Unmodified	1748.9205	0.9204994	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		6.67	6.6		2							1	2		1		99.017	95.97	2	6.5662E-30	89278	160511_QHF_FH_JSI11i_2	191.26	144.36			1.6679	1.4273	60.994	3	1	Median	1.0414	0.89623	65.812	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7535	1.7743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	266250000	119530000	146720000	154600000	62562000	92034000	0	0	0	111660000	56970000	54686000	0	0	0	16038	4989	15211	97212;97213;97214	131111;131112;131113	131112			3	
FLINLEGGDIREESSYK	1	Unmodified	1968.9793	0.97927114	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6								1	4	5	73.855	73.376	2;3	3.011E-09	65399	160511_QHF_FH_JSI11i_3	167.14	123.52			1.1615	1.174	32.066	10	7	Median	NaN	NaN	NaN	0	0	Median	0.66739	0.83939	NaN	1	0	Median	1.5094	1.4631	15.205	4	3	Median	1.0078	1.1158	29.614	5	4	Median	1071200000	500830000	570410000	0	0	0	96515000	45096000	51419000	464400000	217880000	246530000	510320000	237850000	272460000	16039	4983	15212	97215;97216;97217;97218;97219;97220;97221;97222;97223;97224	131114;131115;131116;131117;131118;131119;131120;131121;131122;131123;131124;131125;131126;131127	131117			14	
FLINPELIISR	0	Unmodified	1313.7707	0.77072234	3352	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			100.25	100.17	2	0.011523	88649	160511_QHF_FH_JSI10i_2	46.001	18.747			1.0446	1.0712	0.36635	2	0	Median	1.2461	1.074	NaN	1	0	Median	0.87572	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25810000	12475000	13335000	11125000	5938400	5186500	14685000	6537000	8148300	0	0	0	0	0	0	16040	3352	15213	97225;97226	131128;131129	131129			2	
FLIPNASQAESK	1	Unmodified	1303.6772	0.67721588	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.36	6	7	4			2	3	4	3	5	5	10	9	55.832	50.981	2;3	1.9001E-31	44996	160511_QHF_FH_JSI10i_2	190.88	128.92			1.0201	0.99824	29.96	28	6	Median	1.0517	0.82874	15.05	5	0	Median	0.80491	0.92897	4.646	5	0	Median	1.1811	1.1537	39.335	10	4	Median	1.0347	1.1158	22.693	8	2	Median	51163000000	23971000000	27192000000	6429500000	2722900000	3706600000	9765200000	5117100000	4648100000	19706000000	8977000000	10729000000	15262000000	7154500000	8107900000	16041	2051	15214	97227;97228;97229;97230;97231;97232;97233;97234;97235;97236;97237;97238;97239;97240;97241;97242;97243;97244;97245;97246;97247;97248;97249;97250;97251;97252;97253;97254;97255	131130;131131;131132;131133;131134;131135;131136;131137;131138;131139;131140;131141;131142;131143;131144;131145;131146;131147;131148;131149;131150;131151;131152;131153;131154;131155;131156;131157;131158;131159;131160;131161;131162;131163;131164;131165;131166;131167;131168;131169;131170;131171;131172;131173;131174;131175;131176;131177;131178;131179;131180;131181;131182;131183;131184;131185;131186;131187;131188;131189;131190;131191	131183			62	
FLIPNASQAESKVFYLK	2	Unmodified	1954.0564	0.056399252	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		86.238	86.238	3	6.3358E-05	76974	160511_QHF_FH_JSI11i_3	73.022	44.442			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16042	2051	15215	97256	131192	131192			1	
FLIPNASQAESKVFYLK	2	Acetyl (K)	1996.067	0.066963938	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		91.624	82.263	2;3	1.4138E-54	46171	160513_QHF_FH_JSI11Kac_6	239.61	188.33			0.139	0.13336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.139	0.13336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166960000	155810000	11153000	0	0	0	0	0	0	166960000	155810000	11153000	0	0	0	16043	2051	15215	97257;97258	131193;131194	131194	2114		2	
FLIPVLNGLEK	1	Unmodified	1241.7384	0.73835958	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	101.14	100.99	2	5.3647E-07	89461	160511_QHF_FH_JSI10i_2	114.5	75.474			0.7639	0.75897	18.142	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80959	0.99224	NaN	1	0	Median	0.7639	0.75897	NaN	1	0	Median	0.95879	1.0725	NaN	1	0	Median	254470000	129930000	124540000	4480800	0	4480800	76824000	41532000	35292000	102150000	51203000	50952000	71012000	37196000	33816000	16044	3888	15216	97259;97260;97261;97262	131195;131196;131197;131198	131197			4	
FLIQILQLMANSTQMK	1	Oxidation (M)	1894.0056	0.0056260099	3334	Q86UY6	NAA40	N-alpha-acetyltransferase 40	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		97.934	88.523	3	0.00057088	50601	160513_QHF_FH_JSI11Kac_6	74.89	65.232			1.6652	1.6374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6652	1.6374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43920000	10024000	33896000	0	0	0	0	0	0	43920000	10024000	33896000	0	0	0	16045	3334	15217	97263	131199	131199		2247	1	
FLIQILQLMANSTQMK	1	Unmodified	1878.0107	0.010711388	3334	Q86UY6	NAA40	N-alpha-acetyltransferase 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	98.908	90.338	3	0.000249	54503	160513_QHF_FH_JSI10Kac_6	87.647	77.013			0.046463	0.054945	320.44	3	3	Plateau	0.10509	0.092168	NaN	1	1	Median	0.046463	0.054945	NaN	1	1	Median	18.596	17.981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	328370000	189800000	138560000	143890000	74825000	69060000	89128000	85735000	3393000	67244000	1135400	66108000	28109000	28109000	0	16046	3334	15217	97264;97265;97266;97267;97268	131200;131201;131202;131203;131204	131204			5	
FLIQNVLR	0	Unmodified	1001.6022	0.60220045	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	3	3	73.501	70.951	2	1.5058E-05	61954	160511_QHF_FH_JSI12i_3	139.92	100.7			0.69973	0.7613	24.598	10	1	Median	1.228	1.0293	11.275	2	0	Median	0.66201	0.79616	5.1589	2	0	Median	0.77786	0.75049	16.177	3	1	Plateau	0.70901	0.73039	34.712	3	0	Median	2100900000	1125600000	975280000	442840000	207410000	235440000	461110000	271360000	189740000	574130000	307080000	267040000	622780000	339720000	283060000	16047	1520	15218	97269;97270;97271;97272;97273;97274;97275;97276;97277;97278	131205;131206;131207;131208;131209;131210;131211;131212;131213;131214;131215;131216;131217;131218;131219;131220;131221;131222	131221			18	
FLITGADQNR	0	Unmodified	1133.5829	0.58292157	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	41.276	40.56	2	0.001361	34718	160511_QHF_FH_JSI12i_2	70.919	44.317			0.70191	0.78373	7.0711	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60785	0.7455	NaN	1	0	Median	0.81053	0.82391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	228880000	130500000	98376000	0	0	0	93957000	59436000	34521000	134920000	71067000	63855000	0	0	0	16048	3100	15219	97279;97280;97281;97282;97283	131223;131224;131225;131226;131227	131224			5	
FLITHNPTNATLNK	1	Unmodified	1582.8467	0.84674083	3931;2334	Q12974;Q93096	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.63		3	13						5	4	5	5	7	47.974	45.356	2;3	1.4523E-17	40197	160511_QHF_FH_JSI10i_2	140.31	68.309			0.6549	0.72061	61.198	19	18	Median	2.4901	2.0545	57.548	4	4	Median	0.5767	0.65511	45.874	4	4	Median	0.59439	0.56102	50.001	5	4	Median	0.63591	0.6662	57.753	6	6	Median	3973400000	1882200000	2091200000	313970000	92650000	221320000	456530000	250550000	205980000	1013800000	485220000	528540000	2189100000	1053700000	1135300000	16049	2334;3931	15220	97284;97285;97286;97287;97288;97289;97290;97291;97292;97293;97294;97295;97296;97297;97298;97299;97300;97301;97302;97303;97304	131228;131229;131230;131231;131232;131233;131234;131235;131236;131237;131238;131239;131240;131241;131242;131243;131244;131245;131246;131247;131248;131249;131250	131242			23	
FLITQILVALR	0	Unmodified	1285.8122	0.81219322	4570	Q9BZL6;Q15139	PRKD2;PRKD1	Serine/threonine-protein kinase D2;Serine/threonine-protein kinase D1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.103	90.014	2	2.3116E-09	53764	160513_QHF_FH_JSI10Kac_6	125.57	89.625			0.72968	0.71821	20.323	3	1	Median	0.72968	0.63176	NaN	1	1	Median	0.61184	0.71821	NaN	1	0	Median	0.95918	0.94072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128390000	80323000	48063000	34534000	21987000	12547000	49479000	31870000	17608000	44373000	26466000	17908000	0	0	0	16050	4570	15221	97305;97306;97307	131251;131252;131253	131253			3	
FLIVAHDDGR	0	Unmodified	1141.588	0.58800695	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.47		12	9				1	7	8	11	9	8	9	42.213	37.278	2;3	2.9906E-17	19670	160513_QHF_FH_JSI9Kac_6	162.97	144.93			0.93937	0.90312	39.95	35	7	Median	1.1053	0.95639	39.456	9	3	Median	0.75113	0.92422	24.584	9	3	Median	0.9033	0.89768	64.946	8	1	Median	0.7414	0.81906	29.181	9	0	Median	9439000000	4715800000	4723300000	1657000000	718580000	938410000	2432900000	1258800000	1174200000	3507900000	1880500000	1627400000	1841200000	857940000	983300000	16051	2751	15222	97308;97309;97310;97311;97312;97313;97314;97315;97316;97317;97318;97319;97320;97321;97322;97323;97324;97325;97326;97327;97328;97329;97330;97331;97332;97333;97334;97335;97336;97337;97338;97339;97340;97341;97342;97343;97344	131254;131255;131256;131257;131258;131259;131260;131261;131262;131263;131264;131265;131266;131267;131268;131269;131270;131271;131272;131273;131274;131275;131276;131277;131278;131279;131280;131281;131282;131283;131284;131285;131286;131287;131288;131289;131290;131291;131292;131293;131294;131295;131296;131297;131298;131299;131300;131301;131302;131303;131304;131305;131306;131307;131308;131309;131310;131311;131312;131313;131314;131315;131316;131317;131318;131319;131320;131321;131322	131307			66	
FLIWDTAGQER	0	Unmodified	1334.6619	0.66190017	2461;5389	Q13636;Q9UL26	RAB31;RAB22A	Ras-related protein Rab-31;Ras-related protein Rab-22A	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	76.833	75.967	2	0.00045373	65766	160511_QHF_FH_JSI12i_2	70.908	59.418			0.81833	0.83777	12.062	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68002	0.82616	NaN	1	0	Median	0.81833	0.83777	NaN	1	0	Median	0.91232	1.0249	NaN	1	0	Median	224430000	130940000	93486000	0	0	0	75887000	45408000	30479000	79277000	49299000	29978000	69265000	36236000	33030000	16052	2461;5389	15223	97345;97346;97347	131323;131324;131325	131324			3	
FLKEAGHGTQK	2	Acetyl (K)	1256.6513	0.65133548	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		23.209	14.095	2;3	9.6252E-05	9042	160513_QHF_FH_JSI11Kac_6	91.202	69.738			0.11125	0.10648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11125	0.10648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12129000	11826000	302960	0	0	0	0	0	0	12129000	11826000	302960	0	0	0	16053	1168	15224	97348;97349	131326;131327	131327	1027		2	
FLKEAGHGTTK	2	Acetyl (K)	1229.6404	0.64043645	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		24.486	15.383	3	0.00364	9645	160513_QHF_FH_JSI11Kac_6	61.167	28.913			0.12194	0.11895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12194	0.11895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5764700	5091500	673130	0	0	0	0	0	0	5764700	5091500	673130	0	0	0	16054	1239	15225	97350	131328	131328	1136		1	
FLKFGMTPSK	2	Acetyl (K)	1196.6264	0.62636629	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	74.064	65.34	2	1.3798E-05	36062	160513_QHF_FH_JSI10Kac_6	107.24	49.646			0.67311	0.71852	118.03	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3939	1.6554	NaN	1	0	Median	0.32504	0.31187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157380000	104830000	52542000	0	0	0	38123000	11847000	26276000	109490000	83223000	26265000	9764100	9764100	0	16055	1846	15226	97351;97352;97353	131329;131330;131331	131331	1854		3	
FLKGLASR	1	Acetyl (K)	932.54435	0.54435122	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.727	42.007	2	0.024437	22728	160513_QHF_FH_JSI11Kac_6	64.42	15.859			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25070000	25070000	0	0	0	0	0	0	0	25070000	25070000	0	0	0	0	16056	1294	15227	97354	131332	131332	1222		1	
FLKHWDHLTQVK	2	Acetyl (K)	1592.8463	0.8463469	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	1	4	4	3	62.712	53.471	2;3;4	1.0589E-12	28098	160513_QHF_FH_JSI12Kac_6	120.87	106.52			0.68063	0.7213	218.1	10	6	Median	0.87527	0.74128	NaN	1	0	Median	1.4724	1.7153	329.53	4	4	Median	0.57651	0.55337	197.66	3	2	Median	0.68063	0.72891	5.3467	2	0	Median	574120000	332730000	241390000	56937000	27631000	29305000	243570000	132880000	110690000	167740000	116410000	51327000	105870000	55803000	50071000	16057	1341	15228	97355;97356;97357;97358;97359;97360;97361;97362;97363;97364;97365;97366	131333;131334;131335;131336;131337;131338;131339;131340;131341;131342;131343;131344;131345;131346;131347;131348;131349	131343	1267		16	
FLKPDVR	1	Unmodified	873.50724	0.50723743	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			22.405	21.173	3	0.048474	17416	160511_QHF_FH_JSI10i_3	33.263	20.226			0.19248	0.216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19248	0.216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102420000	80970000	21451000	0	0	0	102420000	80970000	21451000	0	0	0	0	0	0	16058	2229	15229	97367	131350	131350			1	
FLKPVELR	1	Unmodified	1000.607	0.60695147	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.697	38.697	3	0.032486	33955	160511_QHF_FH_JSI11i_3	36.334	13.594			0.21771	0.2001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21771	0.2001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93522000	69300000	24221000	0	0	0	0	0	0	93522000	69300000	24221000	0	0	0	16059	2253	15230	97368	131351	131351			1	
FLKPYTLEEQK	2	Acetyl (K)	1436.7551	0.75513185	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		71.319	60.519	2	0.0010136	32425	160513_QHF_FH_JSI11Kac_5	86.624	42.315			1.4041	1.3447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4041	1.3447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6431800	3260400	3171300	0	0	0	0	0	0	6431800	3260400	3171300	0	0	0	16060	1829	15231	97369	131352	131352	1843		1	
FLKSGDAAIVDMVPGK	2	Acetyl (K);Oxidation (M)	1704.8757	0.87565769	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.629						1	5	3			3	4	2	75.702	65.317	2;3	9.4742E-05	34595	160513_QHF_FH_JSI10Kac_4	94.09	69.747			0.59586	0.6518	57.036	8	2	Median	NaN	NaN	NaN	0	0	Median	0.60301	0.72236	11.519	3	0	Plateau	0.48367	0.47732	11.433	3	0	Plateau	0.9836	1.0668	125.45	2	2	Median	57264000	34423000	22840000	0	0	0	25660000	14644000	11016000	25977000	17238000	8739000	5626400	2541200	3085300	16061	2072	15232	97370;97371;97372;97373;97374;97375;97376;97377;97378	131353;131354;131355;131356;131357;131358;131359;131360	131354	2149	1731	8	
FLKSGDAAIVDMVPGK	2	Acetyl (K)	1688.8807	0.88074307	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.4							4	1			1	3	1	83.46	72.895	2;3	0.0020649	38162	160513_QHF_FH_JSI10Kac_4	97.551	80.184			0.67718	0.66244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67718	0.66244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16291000	10016000	6275200	0	0	0	1065800	1065800	0	14633000	8358200	6275200	592040	592040	0	16062	2072	15232	97379;97380;97381;97382;97383	131361;131362;131363;131364;131365	131361	2149		5	
FLKSIAEGIGPEER	1	Acetyl (K)	1586.8304	0.83042206	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.855	65.191	2	0.0019294	34723	160513_QHF_FH_JSI11Kac_5	83.617	57.679			0.26978	0.26407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26978	0.26407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1669500	1386700	282780	0	0	0	0	0	0	1669500	1386700	282780	0	0	0	16063	1892	15233	97384	131366	131366	1896		1	
FLKTVVNK	2	Acetyl (K)	989.59097	0.59096706	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.629							3	5	1		3	4	2	50.018	39.645	2	0.0008279	23439	160513_QHF_FH_JSI11Kac_4	93.374	22.461			6.6623	7.4296	52.533	5	5	Median	NaN	NaN	NaN	0	0	Median	7.2473	8.6544	21.581	2	2	Median	11.941	11.862	80.743	2	2	Median	5.0057	5.4591	NaN	1	1	Median	90784000	62577000	28207000	0	0	0	19764000	8160800	11603000	62446000	48585000	13861000	8573400	5831400	2742100	16064	231	15234	97385;97386;97387;97388;97389;97390;97391;97392;97393	131367;131368;131369;131370;131371;131372;131373;131374;131375	131370	125		9	
FLKYTHTK	2	Acetyl (K)	1078.5811	0.58113065	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.97	22.688	3	0.010309	12951	160513_QHF_FH_JSI11Kac_6	46.819	31.954			1.4972	1.5102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4972	1.5102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7538100	3749300	3788800	0	0	0	0	0	0	7538100	3749300	3788800	0	0	0	16065	486	15235	97394	131376	131376	249		1	
FLLADNLYCK	1	Unmodified	1255.6271	0.62709457	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	72.21	71.313	2	1.7414E-05	62500	160511_QHF_FH_JSI11i_2	110.87	69.885			0.80741	0.82442	49.611	3	2	Median	NaN	NaN	NaN	0	0	Median	0.301	0.36504	NaN	1	0	Median	0.80741	0.82442	NaN	1	1	Median	0.83125	0.89592	NaN	1	1	Median	274530000	145870000	128660000	0	0	0	53740000	42713000	11028000	139270000	67545000	71722000	81523000	35616000	45906000	16066	1961	15236	97395;97396;97397;97398;97399	131377;131378;131379;131380;131381;131382	131379			6	
FLLAVSR	0	Unmodified	804.48577	0.48577371	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			57.769	52.79	2	0.019669	29094	160513_QHF_FH_JSI10Kac_6	70.716	5.0435			0.79284	0.92953	15.371	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79284	0.92953	15.371	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	274090000	142750000	131340000	0	0	0	274090000	142750000	131340000	0	0	0	0	0	0	16067	3050	15237	97400;97401	131383;131384;131385	131385			3	
FLLDAVFAK	1	Unmodified	1022.5801	0.58006802	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		92.072	91.615	2	0.00291	81303	160511_QHF_FH_JSI10i_2	72.485	47.562			0.62438	0.70761	2.6259	2	2	Median	NaN	NaN	NaN	0	0	Median	0.54084	0.69459	NaN	1	1	Median	0.72083	0.72087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38453000	18964000	19488000	0	0	0	12976000	7173900	5801900	25477000	11791000	13686000	0	0	0	16068	4152	15238	97402;97403	131386;131387	131387			2	
FLLDHQGELFPSPDPSGL	0	Unmodified	1967.9629	0.9628928	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.89	100.77	2	8.9458E-41	86592	160511_QHF_FH_JSI12i_2	198.57	188.52			0.90354	0.94222	14.596	4	2	Median	0.90836	0.77863	NaN	1	1	Median	0.73513	0.8837	NaN	1	0	Median	1.06	1.0851	NaN	1	1	Median	0.89875	1.0046	NaN	1	0	Median	570150000	291060000	279090000	114400000	55758000	58642000	147350000	80397000	66951000	162020000	76747000	85276000	146380000	78161000	68221000	16069	2261	15239	97404;97405;97406;97407	131388;131389;131390;131391;131392;131393	131388			6	
FLLDTNK	1	Unmodified	849.45962	0.45961853	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	42.844	41.876	2	0.002495	36659	160511_QHF_FH_JSI9i_2	110.63	6.5222			1.3793	1.4076	9.7417	3	0	Median	1.4619	1.2289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3793	1.4076	NaN	1	0	Median	1.3094	1.4844	NaN	1	0	Median	1026700000	440490000	586220000	235100000	98711000	136390000	0	0	0	467730000	186680000	281050000	323880000	155100000	168780000	16070	2545	15240	97408;97409;97410	131394;131395;131396	131395			3	
FLLEAGADQEHK	1	Unmodified	1356.6674	0.66737948	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.535	38.627	2;3	7.0678E-05	33156	160511_QHF_FH_JSI12i_2	90.434	73.661			1.3517	1.4388	62.966	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1401	2.2458	NaN	1	1	Median	0.85375	0.92181	NaN	1	1	Median	77455000	23646000	53809000	0	0	0	0	0	0	37605000	5903400	31701000	39850000	17742000	22108000	16071	3434;489	15241	97411;97412	131397;131398	131397			2	
FLLEHHK	1	Unmodified	922.50249	0.5024864	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.134	15.197	2	0.0059185	11978	160511_QHF_FH_JSI12i_3	95.62	77.585			1.2507	1.2867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2507	1.2867	NaN	1	1	Median	50159000	23384000	26775000	0	0	0	0	0	0	0	0	0	50159000	23384000	26775000	16072	4091	15242	97413	131399	131399			1	
FLLENSVLK	1	Unmodified	1061.6121	0.61209643	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.24	69.349	2	0.00018602	60708	160511_QHF_FH_JSI11i_2	103.56	19.762			0.56947	0.44725	22.372	4	4	Linear	0.70547	0.59684	NaN	1	1	Median	0.64799	0.79502	NaN	1	1	Median	0.46885	0.46385	NaN	1	1	Median	0.50047	0.55735	NaN	1	1	Median	115340000	67845000	47495000	22043000	12869000	9174800	21328000	12546000	8782800	44064000	24025000	20039000	27903000	18405000	9498100	16073	3873	15243	97414;97415;97416;97417	131400;131401;131402;131403	131402			4	
FLLESFNNDR	0	Unmodified	1253.6041	0.60405094	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.807	64.877	2	0.019679	55755	160511_QHF_FH_JSI12i_2	49.536	38.707			1.6539	1.7551	11.552	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6236	1.6174	NaN	1	1	Median	1.6847	1.9045	NaN	1	1	Median	141950000	70332000	71618000	0	0	0	0	0	0	87009000	43960000	43049000	54941000	26372000	28569000	16074	2455	15244	97418;97419	131404;131405	131404			2	
FLLEYIAPMTEK	1	Unmodified	1453.7527	0.75268901	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	3.99		8	2						1	3	2	3	3	97.94	96.944	2	6.2156E-05	86286	160511_QHF_FH_JSI11i_2	107.4	79.001			2.04	2.2931	133.25	11	11	Median	3.5792	3.1786	163.84	3	3	Median	0.62904	0.76957	228.53	2	2	Median	1.715	1.6474	107.75	3	3	Median	0.83912	0.93342	138.36	3	3	Plateau	551610000	268160000	283450000	98370000	42729000	55640000	124950000	71555000	53399000	174690000	74468000	100230000	153590000	79410000	74183000	16075	2194	15245	97420;97421;97422;97423;97424;97425;97426;97427;97428;97429;97430	131406;131407;131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420;131421;131422	131416			17	
FLLFSSLVTK	1	Unmodified	1153.6747	0.67469669	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.72		3	4						7	3	4	4	3	95.137	91.006	2	2.5959E-07	47355	160513_QHF_FH_JSI10Kac_6	113.22	94.994			0.42701	0.44677	107.71	14	14	Median	0.40069	0.3204	195.05	3	3	Median	1.2566	1.5273	100.14	4	4	Linear	0.45148	0.43576	82.837	4	4	Median	0.49692	0.53378	104.4	3	3	Median	4243300000	2111500000	2131900000	970970000	450770000	520200000	1374200000	679540000	694640000	1357100000	713320000	643790000	541090000	267860000	273240000	16076	2638;2895	15246	97431;97432;97433;97434;97435;97436;97437;97438;97439;97440;97441;97442;97443;97444	131423;131424;131425;131426;131427;131428;131429;131430;131431;131432;131433;131434;131435;131436;131437;131438	131437			16	
FLLFTDTFLRK	1	Unmodified	1399.7864	0.7863724	5471	Q9UPY3	DICER1	Endoribonuclease Dicer	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		97.412	97.3	3	0.01676	86536	160511_QHF_FH_JSI11i_3	38.021	29.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15917000	8990600	6926000	2409200	0	2409200	0	0	0	13507000	8990600	4516800	0	0	0	16077	5471	15247	97445;97446;97447	131439;131440;131441	131440			3	
FLLGYFPWDSTK	1	Unmodified	1472.734	0.73400248	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.293	84.942	2	1.2486E-19	49701	160513_QHF_FH_JSI10Kac_6	159.4	105.72			0.99553	0.99967	18.237	4	1	Median	1.3999	1.2193	NaN	1	1	Median	0.67938	0.80163	NaN	1	0	Median	0.96555	0.92607	NaN	1	0	Median	1.0264	1.0791	NaN	1	0	Median	1335400000	696740000	638670000	294880000	151960000	142920000	351780000	204850000	146920000	493450000	262500000	230950000	195300000	77425000	117880000	16078	3699	15248	97448;97449;97450;97451	131442;131443;131444;131445;131446;131447	131446			6	
FLLGYLSWEGTAEEHK	1	Unmodified	1878.9152	0.91521432	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	85.232	75.79	3	0.00021901	40433	160513_QHF_FH_JSI12Kac_6	131.96	115.78			0.50085	0.53943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50085	0.53943	NaN	1	1	Median	23046000	13082000	9964300	0	0	0	0	0	0	0	0	0	23046000	13082000	9964300	16079	4818	15249	97452	131448	131448			1	
FLLHQETLPEQLLAEK	1	Unmodified	1908.0357	0.03566381	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	3	5	4	82.473	82.045	2;3	5.9793E-12	72529	160511_QHF_FH_JSI9i_2	114.72	83.29			0.84973	0.93281	61.702	9	8	Median	1.3476	1.1557	NaN	1	1	Median	0.80061	0.96942	80.014	2	2	Median	0.57641	0.52911	84.345	3	3	Median	0.84973	0.93281	61.884	3	2	Median	901420000	468230000	433190000	65903000	33214000	32689000	181130000	106510000	74614000	373050000	200190000	172860000	281340000	128320000	153020000	16080	3765	15250	97453;97454;97455;97456;97457;97458;97459;97460;97461;97462;97463;97464;97465;97466	131449;131450;131451;131452;131453;131454;131455;131456;131457;131458;131459;131460;131461;131462	131455			14	
FLLHSLPK	1	Unmodified	953.56984	0.56983769	4840	Q9HBG6	IFT122	Intraflagellar transport protein 122 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	47.533	45.967	3	0.0049107	40100	160511_QHF_FH_JSI11i_3	47.082	27.295			0.11165	0.12523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11165	0.12523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39398000	35332000	4066800	0	0	0	39398000	35332000	4066800	0	0	0	0	0	0	16081	4840	15251	97467;97468;97469	131463;131464;131465	131463			3	
FLLKNLR	1	Unmodified	902.57017	0.57017204	1160	P19474	TRIM21	E3 ubiquitin-protein ligase TRIM21	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			45.736	37.125	3	0.033901	20609	160513_QHF_FH_JSI10Kac_6	43	1.498			1.0356	1.2305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0356	1.2305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10360000	4359300	6000600	0	0	0	10360000	4359300	6000600	0	0	0	0	0	0	16082	1160	15252	97470	131466	131466			1	
FLLLFTFLK	1	Unmodified	1140.6947	0.69470385	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		99.345	89.929	2	0.00016041	51578	160513_QHF_FH_JSI11Kac_6	95.909	95.909			0.10316	0.094852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10316	0.094852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59494000	53194000	6299700	0	0	0	0	0	0	59494000	53194000	6299700	0	0	0	16083	5042	15253	97471	131467	131467			1	
FLLLNPAVHFAQVVK	1	Unmodified	1694.9872	0.98719747	4070;36	A8MPP1;Q96FC9	DDX11L8;DDX11	Putative ATP-dependent RNA helicase DDX11-like protein 8;Probable ATP-dependent RNA helicase DDX11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	96.137	95.826	3	1.9454E-07	78392	160511_QHF_FH_JSI9i_3	141.58	131.66			0.62189	0.61697	12.75	4	4	Median	0.63141	0.52217	NaN	1	1	Median	0.59661	0.70521	NaN	1	1	Median	0.6951	0.6427	NaN	1	1	Median	0.61251	0.59228	NaN	1	1	Median	120370000	69501000	50865000	21850000	13597000	8252600	26487000	13079000	13408000	27725000	15141000	12584000	44304000	27684000	16620000	16084	36;4070	15254	97472;97473;97474;97475	131468;131469;131470;131471;131472;131473	131471			6	
FLLLQQK	1	Unmodified	888.54329	0.54328858	4766	Q9H7D7	WDR26	WD repeat-containing protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		57.069	56.265	2	0.019796	49794	160511_QHF_FH_JSI10i_2	61.123	8.4395			0.26312	0.30047	19.625	3	3	Plateau	0.40852	0.35937	NaN	1	1	Median	0.29157	0.35502	NaN	1	1	Median	0.25814	0.2543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100020000	66899000	33119000	16911000	10011000	6900300	35863000	25546000	10317000	47244000	31342000	15902000	0	0	0	16085	4766	15255	97476;97477;97478	131474;131475;131476	131476			3	
FLLLSAHSHFISLR	0	Unmodified	1639.9198	0.91984619	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			78.225	71.305	3;4	3.6917E-25	37932	160513_QHF_FH_JSI9Kac_6	201.48	192.66			0.79678	0.68396	44.165	3	3	Median	0.79678	0.68396	NaN	1	1	Median	0.69776	0.81637	60.765	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	253000000	153920000	99079000	70096000	39523000	30573000	182900000	114400000	68506000	0	0	0	0	0	0	16086	3021	15256	97479;97480;97481;97482	131477;131478;131479;131480	131477			4	
FLLLTFADLK	1	Unmodified	1179.6903	0.69034675	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	94.958	86.357	2	4.5754E-08	50807	160513_QHF_FH_JSI10Kac_6	120.07	88.139			0.44213	0.37316	56.941	5	5	Median	0.44213	0.37316	NaN	1	1	Median	0.61906	0.7253	NaN	1	1	Median	0.38405	0.36599	NaN	1	1	Median	0.59926	0.63582	93.402	2	2	Median	257250000	167000000	90245000	57317000	36444000	20873000	68922000	48087000	20835000	47843000	32818000	15025000	83168000	49655000	33512000	16087	680	15257	97483;97484;97485;97486;97487	131481;131482;131483;131484;131485	131485			5	
FLLLTFADLKK	2	Unmodified	1307.7853	0.78530977	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	3	1	2	89.047	82.266	3	4.0793E-12	43336	160513_QHF_FH_JSI9Kac_6	141.08	129.35			0.51552	0.44634	45.298	5	5	Median	0.51552	0.44634	NaN	1	1	Median	0.30735	0.36354	4.7824	2	2	Median	0.88279	0.8661	NaN	1	1	Median	0.84922	0.88665	NaN	1	1	Median	194850000	125170000	69678000	46418000	26771000	19648000	69307000	53797000	15510000	42573000	25001000	17572000	36551000	19602000	16949000	16088	680	15258	97488;97489;97490;97491;97492;97493;97494	131486;131487;131488;131489;131490;131491;131492	131488			7	
FLLLVLQR	0	Unmodified	1000.6433	0.64333698	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		86.208	79.299	2	0.0007958	44726	160513_QHF_FH_JSI10Kac_6	111.69	93.652			0.2815	0.32354	101.84	3	3	Median	NaN	NaN	NaN	0	0	Median	0.63018	0.72779	114.65	2	2	Median	0.2499	0.25027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	255460000	149460000	106010000	0	0	0	218560000	119200000	99357000	36903000	30255000	6648400	0	0	0	16089	3429	15259	97495;97496;97497	131493;131494;131495	131494			3	
FLLLYALLK	1	Unmodified	1092.6947	0.69470385	5121	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	3	1	4	3	100	94.89	2	1.2465E-05	50574	160513_QHF_FH_JSI11Kac_6	119.89	97.147			0.52103	0.55278	145.51	8	6	Median	0.23464	0.20124	172.13	2	2	Median	0.54701	0.63204	NaN	1	0	Median	0.71255	0.67659	152.53	2	2	Median	0.49628	0.48345	195.39	3	2	Median	1646000000	865250000	780700000	510250000	259420000	250820000	19657000	12893000	6763900	664540000	315570000	348970000	451510000	277370000	174140000	16090	5121	15260	97498;97499;97500;97501;97502;97503;97504;97505;97506;97507;97508	131496;131497;131498;131499;131500;131501;131502;131503;131504;131505;131506;131507	131501			12	
FLLLYATQQGQAK	1	Unmodified	1479.8086	0.80856441	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.42			11						15	7	7	5	7	75.569	70.175	2;3	1.3276E-128	36057	160513_QHF_FH_JSI12Kac_6	298.86	232.42			0.55024	0.61355	80.641	23	23	Median	0.95285	0.81685	73.9	6	6	Median	0.82239	0.95914	73.259	6	6	Median	1.0856	1.0414	105.97	4	4	Median	0.5345	0.53578	95.082	7	7	Median	2870300000	1432400000	1437900000	579130000	252600000	326520000	1239700000	631750000	607970000	581690000	305970000	275720000	469770000	242100000	227680000	16091	5239	15261	97509;97510;97511;97512;97513;97514;97515;97516;97517;97518;97519;97520;97521;97522;97523;97524;97525;97526;97527;97528;97529;97530;97531;97532;97533;97534	131508;131509;131510;131511;131512;131513;131514;131515;131516;131517;131518;131519;131520;131521;131522;131523;131524;131525;131526;131527;131528;131529;131530;131531;131532;131533;131534	131527			27	
FLLMLQSVK	1	Unmodified	1077.6256	0.62563801	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			7						7	2	4	4	4	82.848	78.779	2	1.365E-07	40829	160513_QHF_FH_JSI11Kac_6	141.39	82.184			4.4415	5.3217	232.34	13	13	Median	22.772	18.089	NaN	1	1	Median	0.73673	0.88195	268.9	4	4	Median	1.522	1.4222	273.06	4	4	Median	18.586	18.919	203.62	4	4	Linear	2188600000	1098400000	1090200000	50574000	2605700	47968000	1129300000	651550000	477800000	506470000	229090000	277380000	502180000	215120000	287060000	16092	4518;3068	15262	97535;97536;97537;97538;97539;97540;97541;97542;97543;97544;97545;97546;97547;97548	131535;131536;131537;131538;131539;131540;131541;131542;131543;131544;131545;131546;131547;131548;131549;131550	131542			16	
FLLMLQSVK	1	Oxidation (M)	1093.6206	0.62055263	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	78.084	68.621	2	0.00015913	37563	160513_QHF_FH_JSI11Kac_6	103.56	69.31			1.1766	1.0926	11.197	4	0	Median	1.1856	0.99909	11.049	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2442	1.2096	NaN	1	0	Median	1.0414	1.1051	NaN	1	0	Median	358930000	184370000	174560000	157490000	86868000	70625000	0	0	0	99047000	52283000	46764000	102390000	45216000	57171000	16093	4518;3068	15262	97549;97550;97551;97552	131551;131552;131553;131554;131555	131552		2186	5	
FLLNNDK	1	Unmodified	862.45487	0.45486751	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	33.763	32.433	2	0.031469	27483	160511_QHF_FH_JSI12i_2	53.351	16.323			0.58707	0.66054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58707	0.66054	NaN	1	1	Median	91094000	42932000	48162000	0	0	0	0	0	0	0	0	0	91094000	42932000	48162000	16094	369	15263	97553	131556	131556			1	
FLLNNDKNIR	1	Acetyl (K)	1287.6935	0.69353465	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.422	53.732	2	0.052802	29153	160513_QHF_FH_JSI11Kac_6	49.715	27.629			0.021238	0.021193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.021238	0.021193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4231400	4195400	35926	0	0	0	0	0	0	4231400	4195400	35926	0	0	0	16095	369	15264	97554	131557	131557			1	
FLLPIVVR	0	Unmodified	955.62187	0.62187326	3743	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	90.781	90.141	2	0.002902	73803	160511_QHF_FH_JSI9i_3	76.592	76.592			0.95913	1.0125	11.112	7	0	Median	1.2282	1.0328	9.2733	2	0	Median	0.7758	0.95132	8.8079	2	0	Median	0.94178	0.92416	NaN	1	0	Median	1.086	1.1421	11.147	2	0	Median	103050000	51154000	51894000	27825000	10935000	16890000	28783000	16679000	12104000	11534000	4930700	6602900	34906000	18609000	16297000	16096	3743	15265	97555;97556;97557;97558;97559;97560;97561	131558;131559;131560;131561;131562;131563;131564;131565;131566;131567;131568;131569;131570	131563			13	
FLLPYVHNK	1	Unmodified	1129.6284	0.6284152	3287	Q7Z6K3	PTAR1	Protein prenyltransferase alpha subunit repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	55.204	54.606	3	0.00083314	46708	160511_QHF_FH_JSI12i_3	69.423	50.181			0.66693	0.67495	13.403	3	3	Median	0.81778	0.67495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58287	0.53924	NaN	1	1	Median	0.66693	0.68492	NaN	1	1	Median	214070000	128770000	85298000	32869000	18400000	14469000	0	0	0	68814000	45996000	22818000	112390000	64377000	48010000	16097	3287	15266	97562;97563;97564;97565	131571;131572;131573;131574	131573			4	
FLLQDTVELR	0	Unmodified	1232.6765	0.6764876	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.44	74.179	2	0.00032192	64065	160511_QHF_FH_JSI12i_2	78.149	46.389			0.73391	0.81497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73391	0.81497	NaN	1	0	Median	55441000	33620000	21821000	0	0	0	0	0	0	0	0	0	55441000	33620000	21821000	16098	2084	15267	97566	131575	131575			1	
FLLQEEISK	1	Unmodified	1105.6019	0.60192568	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		59.613	58.923	2	0.0042219	51127	160511_QHF_FH_JSI11i_2	67.897	52.746			0.34429	0.37711	3.1705	2	2	Median	NaN	NaN	NaN	0	0	Median	0.30681	0.36875	NaN	1	1	Median	0.38636	0.38566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71593000	51203000	20390000	0	0	0	25496000	20026000	5469700	46097000	31177000	14920000	0	0	0	16099	2575	15268	97567;97568	131576;131577	131576			2	
FLLQVFTK	1	Unmodified	994.58515	0.5851534	4125	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	1	3	1	2	82.131	79.396	2	0.0038596	70461	160511_QHF_FH_JSI12i_3	77.282	51.388			2.3871	2.4553	74.154	7	6	Median	3.8359	3.0807	NaN	1	1	Median	1.214	1.405	102.21	3	2	Median	2.6983	2.4553	NaN	1	1	Median	2.3008	2.3587	19.37	2	2	Median	361940000	160630000	201300000	59052000	18616000	40436000	143040000	66848000	76188000	40647000	18946000	21701000	119200000	56222000	62978000	16100	4125	15269	97569;97570;97571;97572;97573;97574;97575	131578;131579;131580;131581;131582;131583;131584	131582			7	
FLLSDQSLLLLPEYHQR	0	Unmodified	2071.1102	0.11022574	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.67	100.54	3	3.4566E-11	86444	160511_QHF_FH_JSI12i_2	124.43	115.64			1.0622	1.1769	5.8464	4	0	Median	1.44	1.2273	NaN	1	0	Median	0.98356	1.2028	NaN	1	0	Median	1.0791	1.0754	NaN	1	0	Median	1.0456	1.1516	NaN	1	0	Median	215030000	114300000	100730000	39187000	17951000	21237000	43901000	25487000	18414000	56538000	27692000	28846000	75405000	43173000	32233000	16101	2677	15270	97576;97577;97578;97579	131585;131586;131587;131588;131589;131590;131591;131592;131593	131585			9	
FLLSESGSGK	1	Unmodified	1023.5237	0.52367535	1155	P19367	HK1	Hexokinase-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.06	37.616	2	0.035792	32128	160511_QHF_FH_JSI11i_2	46.158	19.556			1.0648	1.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0648	1.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52931000	25108000	27823000	0	0	0	0	0	0	52931000	25108000	27823000	0	0	0	16102	1155	15271	97580	131594	131594			1	
FLLSLPEHR	0	Unmodified	1110.6186	0.61857879	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.76		7	6						4	4	3	4	6	62.97	60.264	2;3	4.1888E-09	52115	160511_QHF_FH_JSI11i_2	151.44	127.67			0.88325	0.89249	22.147	13	2	Median	1.0858	0.94333	26.741	3	0	Median	0.78158	0.93967	23.829	2	0	Median	0.84952	0.8373	15.977	4	1	Median	0.88015	0.9187	25.955	4	1	Median	3181200000	1657300000	1523900000	481720000	192830000	288880000	596100000	289010000	307080000	1090100000	577430000	512650000	1013300000	598030000	415300000	16103	2598	15272	97581;97582;97583;97584;97585;97586;97587;97588;97589;97590;97591;97592;97593;97594;97595;97596;97597	131595;131596;131597;131598;131599;131600;131601;131602;131603;131604;131605;131606;131607;131608;131609;131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622;131623	131613			29	
FLLTGLLSGLPAPQFAIR	0	Unmodified	1913.1139	0.11385455	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	98.591	90.265	2;3	9.362E-97	51176	160513_QHF_FH_JSI11Kac_6	235.21	159.43			1.1314	0.97741	54.055	7	2	Median	1.1314	0.97741	NaN	1	0	Median	0.90462	1.0545	73.523	2	1	Median	1.1131	1.036	24.433	2	0	Median	1.3398	1.4482	99.213	2	1	Median	487810000	246190000	241620000	74516000	36492000	38024000	205600000	117910000	87692000	119160000	49235000	69926000	88536000	42559000	45976000	16104	4564	15273	97598;97599;97600;97601;97602;97603;97604	131624;131625;131626;131627;131628;131629;131630	131626			7	
FLLVLADGLR	0	Unmodified	1115.6703	0.67028001	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	89.182	82.373	2	3.3762E-05	44047	160513_QHF_FH_JSI11Kac_6	129.72	109.02			2.9508	3.1094	10.404	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8782	2.8889	NaN	1	1	Median	3.0252	3.3468	NaN	1	1	Median	132360000	10295000	122060000	26121000	0	26121000	56452000	0	56452000	35465000	7379800	28085000	14318000	2915500	11402000	16105	4794	15274	97605;97606;97607;97608;97609	131631;131632;131633;131634;131635	131632			5	
FLLYAMDSYWHSR	0	Unmodified	1687.7817	0.78169773	1973	P61968	LMO4	LIM domain transcription factor LMO4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	84.37	75.749	3	1.0942E-21	43006	160513_QHF_FH_JSI10Kac_6	160.56	150.49			0.86205	0.86841	95.828	6	2	Median	1.1942	1.0165	NaN	1	0	Median	0.62228	0.74191	NaN	1	0	Median	1.2901	1.2479	140.22	2	1	Median	1.3389	1.4246	152.08	2	1	Median	910280000	456210000	454070000	145600000	69508000	76097000	414850000	237190000	177650000	177150000	79094000	98059000	172680000	70416000	102260000	16106	1973	15275	97610;97611;97612;97613;97614;97615	131636;131637;131638;131639;131640;131641;131642;131643	131643			8	
FLLYAMDSYWHSR	0	Oxidation (M)	1703.7766	0.77661235	1973	P61968	LMO4	LIM domain transcription factor LMO4	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	76.748	67.306	3	0.0008208	35428	160513_QHF_FH_JSI12Kac_6	60.937	49.666			1.0237	1.0961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0237	1.0961	NaN	1	0	Median	21066000	10654000	10412000	0	0	0	0	0	0	0	0	0	21066000	10654000	10412000	16107	1973	15275	97616	131644	131644		1635	1	
FLLYDQTK	1	Unmodified	1026.5386	0.53859714	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		53.164	52.333	2	0.0032734	45909	160511_QHF_FH_JSI9i_2	79.809	61.774			1.0595	0.94842	22.842	3	1	Median	1.0595	0.90703	NaN	1	1	Median	1.0962	1.375	NaN	1	0	Median	0.97829	0.94842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	344360000	199810000	144550000	88551000	41689000	46862000	104740000	57983000	46755000	151070000	100140000	50930000	0	0	0	16108	5534	15276	97617;97618;97619	131645;131646	131645			2	
FLMANGQLVK	1	Unmodified	1119.6111	0.61105057	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.93	4.77	2	8	3						2	5	4	3	3	58.08	55.963	2	7.0585E-07	47984	160511_QHF_FH_JSI12i_2	122.13	112.14			0.5791	0.52725	97.089	15	15	Median	0.76401	0.65385	96.199	5	5	Median	0.40394	0.48062	98.193	4	4	Median	0.3581	0.33614	149.67	3	3	Median	0.66251	0.70103	99.739	3	3	Median	5324500000	2572600000	2751900000	1274800000	495370000	779440000	1257600000	606760000	650840000	1612600000	770330000	842230000	1179600000	700150000	479420000	16109	1702;1368	15277	97620;97621;97622;97623;97624;97625;97626;97627;97628;97629;97630;97631;97632;97633;97634	131647;131648;131649;131650;131651;131652;131653;131654;131655;131656;131657;131658;131659;131660;131661;131662;131663;131664;131665;131666	131650			20	
FLMFIYK	1	Unmodified	960.5143	0.51429664	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	84.891	76.264	2	0.0035654	41585	160513_QHF_FH_JSI9Kac_6	99.511	88.142			1.8888	2.1142	147.59	6	6	Median	6.3297	5.4713	NaN	1	1	Median	1.07	1.249	NaN	1	1	Median	0.97907	0.93224	212.82	2	2	Median	0.84534	0.90098	195.05	2	2	Median	724770000	340010000	384760000	74617000	12154000	62463000	195340000	93560000	101780000	284100000	146060000	138040000	170720000	88241000	82479000	16110	3000	15278	97635;97636;97637;97638;97639;97640	131667;131668;131669;131670;131671;131672	131669			6	
FLMGTNSPDSR	0	Unmodified	1223.5605	0.56047157	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.5	4.72		3	2					1		2		2	2	37.908	35.717	2	0.0005019	31284	160511_QHF_FH_JSI11i_3	70.552	65.939			1.7574	1.5849	46.012	6	0	Median	1.3531	1.1553	40.705	2	0	Median	NaN	NaN	NaN	0	0	Median	2.8507	2.7848	27.765	2	0	Median	1.5062	1.5304	8.9618	2	0	Median	403540000	129820000	273720000	91972000	26353000	65618000	0	0	0	184470000	52441000	132030000	127100000	51027000	76077000	16111	3594	15279	97641;97642;97643;97644;97645;97646	131673;131674;131675	131673			3	
FLMKSYDQVHSGK	2	Acetyl (K)	1580.7657	0.76571331	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.287								1	10	2	4	3	2	54.139	44.748	2;3	1.83E-21	24581	160513_QHF_FH_JSI10Kac_6	160.48	145.09			0.97127	0.93885	21.646	4	0	Median	0.91351	0.79742	NaN	1	0	Median	0.64162	0.75717	NaN	1	0	Median	1.2216	1.1497	NaN	1	0	Median	1.0327	1.1054	NaN	1	0	Median	371610000	194250000	177360000	79191000	46209000	32982000	142230000	74811000	67420000	81924000	37422000	44501000	68266000	35806000	32460000	16112	2624	15280	97647;97648;97649;97650;97651;97652;97653;97654;97655;97656;97657	131676;131677;131678;131679;131680;131681;131682;131683;131684;131685;131686;131687;131688;131689	131687	2590		14	
FLMKSYDQVHSGK	2	Acetyl (K);Oxidation (M)	1596.7606	0.76062794	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By matching	By MS/MS	15.7	0.471								2	4	1	2	1	2	42.709	33.255	3	0.00030907	17297	160513_QHF_FH_JSI12Kac_6	79.652	79.652			1.0544	1.0895	41.075	6	0	Median	1.134	0.97873	NaN	1	0	Median	0.70682	0.83694	41.8	2	0	Median	1.1104	1.0775	NaN	1	0	Median	1.4502	1.5707	50.173	2	0	Median	47361000	23319000	24042000	10970000	5169700	5800400	11055000	6606700	4448600	8358900	3802100	4556800	16977000	7740900	9236200	16113	2624	15280	97658;97659;97660;97661;97662;97663	131690;131691;131692;131693;131694;131695;131696	131693	2590	2054	7	
FLMSLLNFLNNFQTAK	1	Unmodified	1899.9917	0.99169051	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	99.416	91.577	2;3	3.415E-246	52044	160513_QHF_FH_JSI9Kac_6	361.51	266.11			8.7794	8.4551	218.62	4	4	Median	9.8254	8.4551	6.083	2	2	Median	8.0875	9.588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10383	0.11153	NaN	1	1	Median	428010000	53645000	374370000	164510000	15496000	149010000	234040000	10276000	223770000	0	0	0	29460000	27873000	1587500	16114	3196	15281	97664;97665;97666;97667;97668	131697;131698;131699;131700;131701	131697			5	
FLMSLVNQVPK	1	Unmodified	1274.7057	0.70567924	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	3	3	4	78.015	76.453	2	1.6221E-07	64465	160511_QHF_FH_JSI10i_3	123.5	100.43			5.5035	5.2405	174.48	12	11	Median	8.3313	7.1697	191.48	3	3	Plateau	6.1515	7.3671	198.19	3	2	Plateau	8.6612	8.4024	42.766	3	3	Plateau	8.9871	10.098	268.57	3	3	Median	895130000	281240000	613890000	143030000	33804000	109230000	193310000	74069000	119240000	207890000	35630000	172260000	350890000	137740000	213150000	16115	120	15282	97669;97670;97671;97672;97673;97674;97675;97676;97677;97678;97679;97680;97681	131702;131703;131704;131705;131706;131707;131708;131709;131710;131711;131712;131713;131714	131704			13	
FLMYDLGFRK	1	Unmodified	1288.6638	0.66381443	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	74.979	74.289	3	0.00012653	66050	160511_QHF_FH_JSI11i_3	72.006	72.006			1.215	1.4023	44.919	5	4	Median	2.5848	2.1972	NaN	1	1	Median	1.215	1.4023	NaN	1	1	Median	0.997	0.93112	NaN	1	0	Median	1.0338	1.0165	55.1	2	2	Median	133460000	58732000	74730000	9917800	3141200	6776600	14550000	6106200	8444200	38147000	20714000	17433000	70847000	28770000	42076000	16116	413	15283	97682;97683;97684;97685;97686;97687;97688	131715;131716;131717;131718;131719;131720;131721;131722	131716			8	
FLNAENAQK	1	Unmodified	1033.5193	0.51925868	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.58	6	7	4				3	3		7	5	6	5	19.022	16.272	2	1.6118E-06	14821	160511_QHF_FH_JSI9i_2	143.01	87.48			1.3268	1.2636	118.24	23	22	Median	0.64842	0.50147	104.73	7	6	Median	2.4158	2.8524	141.91	5	5	Median	1.459	1.4429	136.23	6	6	Median	1.4135	1.5036	105.49	5	5	Median	12712000000	5626900000	7084800000	1951000000	884740000	1066200000	3423800000	1529800000	1894000000	4811800000	2186700000	2625100000	2525100000	1025600000	1499500000	16117	1565	15284	97689;97690;97691;97692;97693;97694;97695;97696;97697;97698;97699;97700;97701;97702;97703;97704;97705;97706;97707;97708;97709;97710;97711	131723;131724;131725;131726;131727;131728;131729;131730;131731;131732;131733;131734;131735;131736;131737;131738;131739;131740;131741;131742;131743;131744;131745;131746;131747;131748;131749;131750;131751	131737			29	
FLNAENAQKFK	2	Acetyl (K)	1350.6932	0.6932003	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.687							4	6	2	1	5	5	1	57.883	47.392	2	3.6336E-11	26140	160513_QHF_FH_JSI10Kac_4	138.11	117.78			2.0716	2.2437	276.55	10	10	Median	5.2564	4.403	NaN	1	1	Median	3.1573	3.7424	298.7	3	3	Median	1.3592	1.3452	310.88	5	5	Median	0.049862	0.056073	NaN	1	1	Median	116850000	70265000	46587000	4463000	413780	4049200	26699000	11329000	15370000	79494000	52496000	26998000	6195900	6026200	169730	16118	1565	15285	97712;97713;97714;97715;97716;97717;97718;97719;97720;97721;97722;97723	131752;131753;131754;131755;131756;131757;131758;131759;131760;131761;131762;131763	131754	1579		12	
FLNALTLNMIR	0	Unmodified	1304.7275	0.72747731	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	6.25	5.63			3						1	2			2	88.93	86.451	2	0.00046273	42188	160513_QHF_FH_JSI9Kac_6	90.15	57.152			5.9179	5.8797	262.18	3	3	Median	8.4595	6.9101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63007	0.6328	315.24	2	2	Median	112250000	33598000	78649000	50360000	2424500	47936000	0	0	0	0	0	0	61887000	31174000	30713000	16119	3075	15286	97724;97725;97726;97727	131764;131765;131766;131767	131765			4	
FLNDSEQVAR	0	Unmodified	1177.5728	0.57275081	4484	Q9BVT8	TMUB1	Transmembrane and ubiquitin-like domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		27.464	26.793	2	0.010349	22370	160511_QHF_FH_JSI11i_2	57.598	26.226			0.81645	0.84222	42.975	4	4	Median	0.86314	0.73968	NaN	1	1	Median	0.77228	0.95898	NaN	1	1	Median	1.1332	1.1524	64.962	2	2	Median	NaN	NaN	NaN	0	0	Median	107140000	56562000	50581000	20843000	9880000	10963000	19624000	11653000	7971200	66676000	35029000	31647000	0	0	0	16120	4484	15287	97728;97729;97730;97731	131768;131769;131770;131771	131769			4	
FLNDTTKPVGLLLSER	1	Unmodified	1801.9938	0.993799	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	1	4	1	74.842	74.313	2;3	9.6381E-16	66394	160511_QHF_FH_JSI11i_3	121.08	95.033			1.054	0.84131	57.238	5	3	Median	1.054	0.84131	NaN	1	0	Median	0.68411	0.79852	NaN	1	0	Median	0.86496	0.82269	112.11	2	2	Median	1.065	1.0603	NaN	1	1	Median	1033500000	511080000	522420000	161730000	75667000	86067000	240640000	136420000	104220000	570360000	265540000	304810000	60769000	33449000	27320000	16121	5205	15288	97732;97733;97734;97735;97736;97737;97738;97739	131772;131773;131774;131775;131776;131777;131778;131779;131780;131781;131782;131783;131784	131776			13	
FLNEFFLNVK	1	Unmodified	1269.6758	0.67575932	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	91.566	90.958	2	0.00010658	78570	160511_QHF_FH_JSI12i_2	99.802	80.015			0.40844	0.44616	132.04	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1829	1.1735	169.21	2	2	Median	0.40844	0.44616	NaN	1	1	Median	97613000	45918000	51695000	0	0	0	0	0	0	76187000	32393000	43793000	21427000	13525000	7902000	16122	1665	15289	97740;97741;97742	131785;131786;131787	131785			3	
FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR	0	Unmodified	3626.6397	0.63972734	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	90.787	90.765	4	4.4747E-40	78662	160511_QHF_FH_JSI12i_3	135.75	133.77			1.1759	1.1006	6.7402	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1981	1.116	1.9565	2	1	Median	0.97986	0.99548	NaN	1	0	Median	255010000	124850000	130160000	0	0	0	0	0	0	158560000	80118000	78441000	96452000	44735000	51717000	16123	307	15290	97743;97744;97745	131788;131789;131790;131791	131791			4	
FLNEMIAPVMR	0	Unmodified	1319.673	0.6729989	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		76.47	76.47	2	0.0024558	68216	160511_QHF_FH_JSI11i_3	72.325	52.548			0.92894	0.86875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92894	0.86875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50026000	23413000	26612000	0	0	0	0	0	0	50026000	23413000	26612000	0	0	0	16124	5300	15291	97746	131792	131792			1	
FLNIFSSYLNLHWK	1	Unmodified	1780.9301	0.93007653	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	3		1	93.838	86.085	2;3	8.9923E-25	50155	160513_QHF_FH_JSI10Kac_6	196.33	165.8			1.6393	1.7103	216.74	5	5	Median	0.61977	0.52626	226.24	2	2	Median	0.72337	0.86651	356.83	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6393	1.7103	NaN	1	1	Median	406590000	201800000	204790000	121880000	68914000	52964000	249610000	121640000	127970000	0	0	0	35102000	11252000	23850000	16125	3238	15292	97747;97748;97749;97750;97751;97752	131793;131794;131795;131796;131797;131798	131796			6	
FLNLSSSPSMAVR	0	Unmodified	1407.718	0.71803484	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	3	1	65.141	64.479	2	1.6696E-05	55798	160511_QHF_FH_JSI12i_3	141.93	104.46			1.1693	1.4472	36.83	7	4	Median	1.6979	1.5283	NaN	1	1	Median	1.1456	1.3607	8.7156	2	1	Median	1.6491	1.659	59.333	3	2	Median	1.1377	1.1419	NaN	1	0	Median	528700000	220660000	308040000	47933000	18296000	29637000	129140000	60764000	68379000	245510000	91037000	154470000	106120000	50565000	55551000	16126	4258	15293	97753;97754;97755;97756;97757;97758;97759;97760	131799;131800;131801;131802;131803;131804;131805;131806;131807;131808	131808			10	
FLNSFASMHR	0	Unmodified	1208.5761	0.57606205	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			50.568	41.956	3	0.00049826	23129	160513_QHF_FH_JSI10Kac_6	65.241	42.015			0.26105	0.31077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26105	0.31077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8176100	5793400	2382700	0	0	0	8176100	5793400	2382700	0	0	0	0	0	0	16127	2767	15294	97761	131809	131809			1	
FLNSGGFIGFATTIHQIVR	0	Unmodified	2077.1109	0.11089444	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.683	83.963	3	0.037741	47630	160513_QHF_FH_JSI10Kac_6	37.4	32.595			0.46781	0.55636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46781	0.55636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213900000	165450000	48451000	0	0	0	213900000	165450000	48451000	0	0	0	0	0	0	16128	430	15295	97762	131810	131810			0	
FLNSLGTIFSFISK	1	Unmodified	1572.8552	0.85518025	2960	Q5TA50	CPTP	Ceramide-1-phosphate transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	100.18	96.438	2	7.6867E-46	50862	160513_QHF_FH_JSI9Kac_6	200.44	170.51			0.93595	0.92284	73.211	4	3	Median	1.448	1.2639	NaN	1	0	Median	0.39218	0.44454	58.822	2	2	Median	1.5614	1.4644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204760000	128520000	76239000	81811000	38495000	43316000	106130000	85588000	20538000	16819000	4432900	12386000	0	0	0	16129	2960	15296	97763;97764;97765;97766;97767;97768	131811;131812;131813;131814;131815;131816	131813			6	
FLNVPMFR	0	Unmodified	1022.5372	0.53715735	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	78.279	77.49	2	2.2792E-06	69111	160511_QHF_FH_JSI11i_3	144.29	126.26			0.91696	0.95679	18.846	8	0	Plateau	1.0202	0.85466	8.8903	2	0	Median	0.79993	0.95004	32.031	2	0	Median	0.91884	0.90491	5.7745	2	0	Median	0.70839	0.75908	28.057	2	0	Median	1647900000	850450000	797400000	291130000	123100000	168030000	362230000	197660000	164570000	475510000	248280000	227230000	518990000	281410000	237580000	16130	231	15297	97769;97770;97771;97772;97773;97774;97775;97776	131817;131818;131819;131820;131821;131822;131823;131824;131825;131826;131827;131828;131829;131830;131831;131832	131818			16	
FLNWATPNL	0	Unmodified	1074.5498	0.54983053	374	O43772	SLC25A20	Mitochondrial carnitine/acylcarnitine carrier protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.14	96.854	2	0.0041358	85803	160511_QHF_FH_JSI10i_2	57.281	52.741			0.86148	0.94218	9.6939	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86148	1.0443	NaN	1	0	Median	0.88286	0.8604	NaN	1	0	Median	0.90843	0.94218	NaN	1	0	Median	20966000	11236000	9730500	0	0	0	8087600	4632300	3455200	6520000	3180300	3339800	6358700	3423100	2935600	16131	374	15298	97777;97778;97779	131833;131834;131835;131836;131837	131837			5	
FLNWIPLGYIFETK	1	Unmodified	1739.9287	0.92867954	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	5	3	1	99.832	94.016	2;3	6.5906E-24	51217	160513_QHF_FH_JSI11Kac_6	154.66	119.24			1.311	1.0965	44.219	11	8	Median	1.6364	1.3833	32.861	2	1	Median	0.80514	0.93274	44.291	5	5	Median	1.3981	1.3213	44.525	3	1	Median	0.66835	0.6973	NaN	1	1	Median	5378100000	2366000000	3012100000	758310000	253780000	504530000	2426900000	1043700000	1383200000	1552700000	665980000	886730000	640140000	402510000	237620000	16132	231	15299	97780;97781;97782;97783;97784;97785;97786;97787;97788;97789;97790;97791	131838;131839;131840;131841;131842;131843;131844;131845;131846;131847;131848;131849;131850;131851	131841			14	
FLPASPYVSDLGQHPVLLALR	0	Unmodified	2292.263	0.26303798	3184	Q6ZRQ5	MMS22L	Protein MMS22-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.73	100.73	3	4.9805E-07	87340	160511_QHF_FH_JSI12i_3	82.037	58.709			0.71882	0.71443	3.4881	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72036	0.69702	NaN	1	0	Median	0.71729	0.73227	NaN	1	0	Median	139520000	82501000	57019000	0	0	0	0	0	0	64281000	39366000	24915000	75238000	43135000	32103000	16133	3184	15300	97792;97793	131852;131853	131853			2	
FLPAVSDENSK	1	Unmodified	1205.5928	0.59281755	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	40.168	39.467	2	8.8291E-05	33765	160511_QHF_FH_JSI11i_2	99.688	79.167			1.4803	1.5441	56.21	8	7	Median	1.4977	1.2548	NaN	1	1	Median	1.637	1.9655	14.879	2	2	Median	1.332	1.3476	83.486	3	3	Median	1.1756	1.2403	52.395	2	1	Median	814860000	419120000	395740000	73577000	30774000	42803000	187360000	95498000	91863000	336540000	184650000	151890000	217380000	108200000	109190000	16134	1580	15301	97794;97795;97796;97797;97798;97799;97800;97801	131854;131855;131856;131857;131858;131859;131860;131861	131859			8	
FLPDEAR	0	Unmodified	846.42357	0.42356738	674	O95298;E9PQ53	NDUFC2;NDUFC2-KCTD14	NADH dehydrogenase [ubiquinone] 1 subunit C2;NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	27.49	26.588	2	0.014353	23198	160511_QHF_FH_JSI10i_2	66.993	50.839			1.0632	1.1913	13.953	4	2	Median	1.6313	1.4135	NaN	1	1	Median	1.026	1.2498	NaN	1	1	Median	1.1018	1.1357	NaN	1	0	Median	0.91758	1.0183	NaN	1	0	Median	555520000	255270000	300260000	106380000	40651000	65726000	123070000	59070000	63999000	185910000	87915000	97993000	140170000	67631000	72538000	16135	674	15302	97802;97803;97804;97805	131862;131863;131864;131865	131865			4	
FLPEALFLHR	0	Unmodified	1241.6921	0.69207809	3870	Q92685	ALG3	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	81.389	80.422	3	0.00023832	69535	160511_QHF_FH_JSI12i_3	79.148	67.101			0.53954	0.64953	77	3	3	Median	2.4144	2.1072	NaN	1	1	Median	0.53954	0.64953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45493	0.49496	NaN	1	1	Median	18014000	9985100	8028600	4235000	939860	3295200	4288700	2535300	1753400	0	0	0	9489900	6509900	2980000	16136	3870	15303	97806;97807;97808;97809;97810;97811	131866;131867;131868;131869;131870;131871	131870			6	
FLPEEEK	1	Unmodified	890.43855	0.43854874	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		26.044	25.379	2	0.013827	21809	160511_QHF_FH_JSI9i_2	68.915	24.304			2.2322	2.2616	17.011	2	2	Median	2.3666	2.0053	NaN	1	1	Median	2.1054	2.5507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120130000	52810000	67319000	54731000	22089000	32643000	65397000	30721000	34676000	0	0	0	0	0	0	16137	4047	15304	97812;97813;97814	131872;131873;131874	131873			3	
FLPEFPSCSLLK	1	Unmodified	1436.7374	0.7373733	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	92.234	91.656	2	0.00011545	80513	160511_QHF_FH_JSI11i_2	87.806	59.08			0.78181	0.78488	24.961	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92048	1.1431	NaN	1	0	Median	0.78181	0.78166	NaN	1	0	Median	1.1258	1.2511	NaN	1	0	Median	85252000	40277000	44975000	0	0	0	24139000	12182000	11957000	40839000	19679000	21161000	20274000	8416800	11857000	16138	4803	15305	97815;97816;97817	131875;131876;131877;131878;131879	131877			5	
FLPEILALQR	0	Unmodified	1198.7074	0.7073938	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		90.302	89.855	2	0.0080084	78939	160511_QHF_FH_JSI11i_2	60.436	44.774			0.2445	0.28657	34.23	3	3	Plateau	0.18124	0.15739	NaN	1	1	Median	0.19412	0.22919	NaN	1	1	Median	0.30795	0.31175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47191000	35318000	11873000	12168000	10658000	1510500	15987000	12139000	3848000	19036000	12521000	6514400	0	0	0	16139	3009	15306	97818;97819;97820	131880;131881;131882	131881			3	
FLPFKVVEK	2	Acetyl (K)	1147.6641	0.664132	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	81.793	72.415	2	0.01288	38437	160513_QHF_FH_JSI12Kac_6	68.735	35.614			0.90095	0.9207	12.654	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86995	0.84189	NaN	1	1	Median	0.93306	1.0069	NaN	1	1	Median	126180000	102830000	23350000	0	0	0	0	0	0	102310000	84010000	18303000	23865000	18818000	5047100	16140	982	15307	97821;97822	131883;131884	131884	766		2	
FLPFSFEHIR	0	Unmodified	1291.6713	0.67134264	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7.45	6.47		3	4						4	3	3	3	2	79.045	74.948	3	1.4592E-14	65445	160511_QHF_FH_JSI10i_3	142.98	118.89			0.8331	0.83396	13.631	9	0	Median	1.2687	1.0244	4.7388	3	0	Median	0.65747	0.76852	1.8287	2	0	Median	0.82265	0.77254	8.1051	2	0	Median	0.8208	0.85446	3.4339	2	0	Median	490180000	250930000	239250000	68076000	28995000	39081000	73120000	40802000	32318000	146020000	76097000	69923000	202960000	105030000	97930000	16141	3926	15308	97823;97824;97825;97826;97827;97828;97829;97830;97831;97832;97833	131885;131886;131887;131888;131889;131890;131891;131892;131893;131894;131895;131896;131897;131898	131888			12	
FLPGMAIGYSSSK	1	Unmodified	1356.6748	0.67477304	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.41		8	6						7	6	5	5	5	69.972	66.529	2	3.5608E-06	34934	160513_QHF_FH_JSI9Kac_6	121.9	82.594			1.091	1.1776	85.406	21	19	Median	1.1458	0.9507	79.418	6	6	Median	1.091	1.3485	123.53	5	5	Median	1.2064	1.1776	84.436	5	4	Median	0.84329	0.90051	76.38	5	4	Median	3878200000	1765100000	2113100000	767770000	332850000	434910000	629080000	326360000	302710000	1024000000	481650000	542370000	1457400000	624280000	833090000	16142	1163	15309	97834;97835;97836;97837;97838;97839;97840;97841;97842;97843;97844;97845;97846;97847;97848;97849;97850;97851;97852;97853;97854	131899;131900;131901;131902;131903;131904;131905;131906;131907;131908;131909;131910;131911;131912;131913;131914;131915;131916;131917;131918;131919;131920;131921;131922;131923;131924;131925;131926	131918			28	
FLPGMAIGYSSSK	1	Oxidation (M)	1372.6697	0.66968766	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	62.818	52.925	2	0.030964	27722	160513_QHF_FH_JSI12Kac_6	52.79	24.391			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16143	1163	15309	97855	131927	131927			1	
FLPGYVGGIQEGAVTPAGVVNK	1	Unmodified	2172.1579	0.15790421	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	83.818	83.247	3	1.0442E-07	71760	160511_QHF_FH_JSI12i_2	84.499	76.505			0.96162	0.9432	31.083	8	3	Median	0.92974	0.80732	NaN	1	0	Median	1.0379	1.2419	33.543	3	2	Median	0.96162	0.9432	5.0913	2	0	Median	1.1036	1.1629	59.05	2	1	Median	407510000	230170000	177340000	56547000	31511000	25036000	152790000	93227000	59565000	113180000	60516000	52662000	84990000	44913000	40077000	16144	5242	15310	97856;97857;97858;97859;97860;97861;97862;97863	131928;131929;131930;131931;131932;131933;131934;131935;131936;131937;131938	131929			10	
FLPHKYDVK	2	Acetyl (K)	1187.6339	0.63389451	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		49.69	39.983	2;3	0.013363	21763	160513_QHF_FH_JSI11Kac_6	38.021	22.877			0.4212	0.41662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4212	0.41662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8882700	6568000	2314800	0	0	0	0	0	0	8882700	6568000	2314800	0	0	0	16145	5330	15311	97864;97865	131939;131940	131939	3367		2	
FLPHYFK	1	Unmodified	950.50142	0.50142377	5510	Q9Y2C2	UST	Uronyl 2-sulfotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			45.807	44.215	3	0.023811	36789	160511_QHF_FH_JSI10i_3	37.021	23.442			0.66551	0.55464	38.382	3	3	Median	0.90696	0.75389	43.406	2	2	Median	0.42944	0.50576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52036000	26576000	25460000	36280000	18225000	18055000	15756000	8350600	7405400	0	0	0	0	0	0	16146	5510	15312	97866;97867;97868	131941;131942;131943	131941			3	
FLPLFDR	0	Unmodified	906.49634	0.49633839	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.93		9	10					1	6	7	5	7	7	77.439	74.514	2	7.4391E-05	37381	160513_QHF_FH_JSI12Kac_6	122.78	92.058			0.90366	0.87826	86.331	26	22	Median	1.0634	0.9033	89.658	7	6	Median	0.65144	0.74143	94.804	5	4	Median	0.90324	0.8539	95.376	7	7	Median	0.90408	0.96824	88.761	7	5	Median	47227000000	21282000000	25945000000	7029200000	2854600000	4174600000	9999100000	4821400000	5177700000	17507000000	8138200000	9368700000	12691000000	5467600000	7223800000	16147	1959	15313	97869;97870;97871;97872;97873;97874;97875;97876;97877;97878;97879;97880;97881;97882;97883;97884;97885;97886;97887;97888;97889;97890;97891;97892;97893;97894	131944;131945;131946;131947;131948;131949;131950;131951;131952;131953;131954;131955;131956;131957;131958;131959;131960;131961;131962;131963;131964;131965;131966;131967;131968;131969;131970;131971;131972;131973;131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984;131985;131986;131987;131988;131989;131990;131991;131992;131993;131994;131995;131996;131997	131995			54	
FLPLLMTNHPAPNLFGTPR	0	Unmodified	2135.135	0.1350007	1876	P56282	POLE2	DNA polymerase epsilon subunit 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.081	83.36	3	0.0014389	47197	160513_QHF_FH_JSI10Kac_6	67.168	43.688			0.36358	0.42829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36358	0.42829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48073000	36662000	11411000	0	0	0	48073000	36662000	11411000	0	0	0	0	0	0	16148	1876	15314	97895	131998	131998			1	
FLPLNIR	0	Unmodified	871.52797	0.52797287	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.02	63.875	2	0.011356	55204	160511_QHF_FH_JSI12i_3	77.944	32.999			0.88919	0.85946	30.876	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73779	0.69089	NaN	1	1	Median	1.0717	1.0692	NaN	1	1	Median	99327000	45807000	53520000	0	0	0	0	0	0	45364000	19783000	25580000	53963000	26024000	27939000	16149	3285	15315	97896;97897	131999;132000	132000			2	
FLPLPVVQLLDR	0	Unmodified	1408.8442	0.84422163	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			102.34	102.18	2	0.00031457	83063	160511_QHF_FH_JSI9i_3	102.06	67.809			1.1303	1.0995	6.3974	2	2	Median	1.4054	1.1503	NaN	1	1	Median	0.90903	1.0508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241400000	114090000	127310000	61017000	24715000	36302000	180390000	89377000	91010000	0	0	0	0	0	0	16150	3073	15316	97898;97899	132001;132002	132002			2	
FLPMFLSDNPNPK	1	Unmodified	1518.7541	0.754086	248	O15118	NPC1	Niemann-Pick C1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.476	85.804	3	0.0036566	75362	160511_QHF_FH_JSI11i_2	51.013	44.576			0.12395	0.13297	34.348	4	4	Median	0.22843	0.20435	NaN	1	1	Median	0.12952	0.15293	NaN	1	1	Median	0.11862	0.11561	NaN	1	1	Median	0.089022	0.092551	NaN	1	1	Median	24373000	19453000	4919500	4696500	4339500	356940	6533000	4578600	1954400	7797800	6188700	1609200	5345600	4346600	998980	16151	248	15317	97900;97901;97902;97903	132003;132004;132005;132006	132005			4	
FLPNAPK	1	Unmodified	785.44357	0.44357454	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.15		4	2					2	1	1	2	4	2	33.535	29.246	2	0.005487	24698	160511_QHF_FH_JSI12i_2	94.669	36.008			0.85484	0.90856	16.149	8	0	Median	1.1428	0.98831	NaN	1	0	Median	0.81745	0.9855	25.915	2	0	Median	0.8117	0.83525	18.488	3	0	Median	0.81265	0.89748	15.431	2	0	Median	1656400000	907680000	748690000	267350000	159160000	108190000	440350000	261080000	179280000	579530000	286280000	293240000	369150000	201160000	167980000	16152	3828	15318	97904;97905;97906;97907;97908;97909;97910;97911;97912	132007;132008;132009;132010;132011;132012;132013;132014;132015;132016	132008			10	
FLPPVLLK	1	Unmodified	925.60008	0.60007518	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	80.47	79.71	2	0.0033731	71128	160511_QHF_FH_JSI10i_2	73.039	73.039			0.96157	0.91762	10.001	8	0	Median	1.056	0.87679	6.7159	2	0	Median	0.76587	0.91619	12.965	2	0	Median	1.0305	1.0084	13.614	2	0	Median	0.91177	0.96207	9.0679	2	0	Median	459550000	214040000	245510000	91375000	42047000	49327000	113390000	58911000	54476000	149900000	67297000	82602000	104890000	45784000	59108000	16153	2997	15319	97913;97914;97915;97916;97917;97918;97919;97920	132017;132018;132019;132020;132021;132022;132023;132024;132025;132026;132027;132028;132029;132030;132031;132032	132030			16	
FLPREEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK	2	Unmodified	3998.0353	0.035336044	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	2		By MS/MS	By matching		3	0			2								1	1		100.8	100.71	4	4.591E-32	83319	160511_QHF_FH_JSI10i_3	109.09	102.84			0.83029	0.86412	6.706	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77498	0.90609	NaN	1	0	Median	0.88954	0.8241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157210000	94664000	62542000	0	0	0	44951000	22875000	22076000	112250000	71789000	40466000	0	0	0	16154	1192	15320	97921;97922	132033	132033			1	
FLPSELRDEH	0	Unmodified	1241.6041	0.60405094	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	41.198	40.4	3	3.0787E-05	35443	160511_QHF_FH_JSI11i_3	88.681	69.549			0.9342	0.95878	18.556	7	0	Median	1.1316	0.97217	NaN	1	0	Median	0.91224	1.0742	28.405	2	0	Median	0.95522	0.9485	15.905	2	0	Median	0.79002	0.83626	19.335	2	0	Median	1889800000	904270000	985570000	179950000	77982000	101970000	311930000	165930000	146000000	739760000	328900000	410860000	658210000	331460000	326740000	16155	5616	15321	97923;97924;97925;97926;97927;97928;97929	132034;132035;132036;132037;132038;132039;132040;132041	132035			6	
FLPSPVVIK	1	Unmodified	998.61645	0.61645353	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.524	66.626	2	0.00064398	58223	160511_QHF_FH_JSI11i_2	86.953	38.45			0.94562	0.83878	14.25	4	1	Linear	1.0857	0.97817	NaN	1	0	Median	0.77434	0.92964	NaN	1	0	Median	0.844	0.84535	NaN	1	0	Median	1.0595	1.1858	NaN	1	1	Median	298130000	164160000	133970000	47899000	25514000	22385000	74424000	44782000	29642000	103620000	50296000	53325000	72190000	43572000	28618000	16156	2455	15322	97930;97931;97932;97933	132042;132043;132044;132045	132044			4	
FLPSPVVIKK	2	Unmodified	1126.7114	0.71141655	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	54.215	53.311	3	0.0033641	43838	160511_QHF_FH_JSI9i_3	47.559	32.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16157	2455	15323	97934;97935	132046;132047	132046			2	
FLPSVFMDAMR	0	Unmodified	1312.6308	0.63079974	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				97.915	97.577	2	0.041995	79209	160511_QHF_FH_JSI9i_3	54.416	48.935			3.8818	3.3373	NaN	1	1	Median	3.8818	3.3373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6706300	1274600	5431700	6706300	1274600	5431700	0	0	0	0	0	0	0	0	0	16158	486	15324	97936	132048	132048			1	
FLQDMHTLLLTR	0	Unmodified	1486.7966	0.79661951	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			74.044	73.283	3	0.011075	65164	160511_QHF_FH_JSI10i_2	41.644	34.915			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16159	2910	15325	97937	132049	132049			1	
FLQDPYSTTFSSFSR	0	Unmodified	1781.8261	0.82606496	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	77.723	76.889	2	5.0988E-05	67560	160511_QHF_FH_JSI11i_2	118.48	88.716			0.91948	0.98335	14.89	4	1	Linear	1.5517	1.3659	NaN	1	1	Median	0.87934	1.0881	NaN	1	0	Median	0.93447	0.98135	NaN	1	0	Median	0.90473	1.0146	NaN	1	0	Median	111730000	52002000	59729000	15446000	5485000	9960900	28415000	14402000	14013000	37646000	19098000	18547000	30224000	13017000	17208000	16160	4818	15326	97938;97939;97940;97941;97942	132050;132051;132052;132053;132054;132055;132056	132053			7	
FLQDTIEEMALK	1	Unmodified	1436.7221	0.72211717	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	79.878	79.095	2	6.2895E-05	69685	160511_QHF_FH_JSI11i_2	107.24	82.901			2.3298	2.682	75.771	5	2	Median	3.1207	2.682	NaN	1	0	Median	1.2889	1.5728	85.511	2	1	Median	0.634	0.64938	NaN	1	1	Median	2.8847	3.2482	NaN	1	0	Median	366530000	128600000	237930000	43709000	7576600	36132000	141900000	51977000	89925000	94976000	46084000	48892000	85946000	22966000	62980000	16161	655	15327	97943;97944;97945;97946;97947	132057;132058;132059;132060;132061;132062	132060			6	
FLQDYFDGNLK	1	Unmodified	1358.6507	0.65066678	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.09	4	7	6					4	3	5	5	7	7	72.84	69.68	2	3.1668E-18	61993	160511_QHF_FH_JSI9i_2	163.64	70.088			1.0261	1.0112	61.515	23	12	Median	1.2903	1.0851	44.758	4	1	Median	0.81764	0.95532	54.02	5	2	Median	1.0261	1.0112	73.026	7	5	Median	0.90644	0.99177	72.296	7	4	Median	14655000000	7030000000	7624700000	1579700000	754490000	825250000	3720600000	2126400000	1594200000	6079900000	2668200000	3411600000	3274400000	1480900000	1793600000	16162	1344	15328	97948;97949;97950;97951;97952;97953;97954;97955;97956;97957;97958;97959;97960;97961;97962;97963;97964;97965;97966;97967;97968;97969;97970;97971	132063;132064;132065;132066;132067;132068;132069;132070;132071;132072;132073;132074;132075;132076;132077;132078;132079;132080;132081;132082;132083;132084;132085;132086;132087;132088;132089;132090;132091;132092;132093;132094;132095;132096;132097;132098;132099;132100;132101	132083			39	
FLQDYFDGNLKR	1	Acetyl (K)	1556.7623	0.7623425	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		79.07	68.483	2	4.5597E-15	37638	160513_QHF_FH_JSI11Kac_6	141.88	96.718			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3856500	3856500	0	0	0	0	0	0	0	3856500	3856500	0	0	0	0	16163	1344	15329	97972;97973	132102;132103	132102	1273		2	
FLQEEAEK	1	Unmodified	992.48148	0.48147619	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				19.225	18.33	2	0.020002	15465	160511_QHF_FH_JSI9i_2	56.721	28.467			0.27942	0.24739	NaN	1	1	Median	0.27942	0.24739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16212000	11998000	4214800	16212000	11998000	4214800	0	0	0	0	0	0	0	0	0	16164	2636	15330	97974	132104	132104			1	
FLQEFYQDDELGK	1	Unmodified	1630.7515	0.75150304	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								2	4	4	4	68.733	68.045	2	5.4039E-08	60494	160511_QHF_FH_JSI9i_1	101.39	82.648			0.55389	0.52069	134.57	11	9	Median	0.36848	0.31155	NaN	1	1	Median	0.96271	1.1536	121.6	4	4	Median	0.55389	0.52069	193.21	3	1	Median	5.4847	5.651	139.25	3	3	Plateau	610130000	291530000	318600000	34506000	28130000	6375400	243990000	111490000	132500000	220670000	108610000	112060000	110960000	43302000	67660000	16165	1411	15331	97975;97976;97977;97978;97979;97980;97981;97982;97983;97984;97985;97986;97987;97988	132105;132106;132107;132108;132109;132110;132111;132112;132113;132114;132115;132116;132117;132118;132119	132114			14	
FLQEFYQDDELGKK	2	Unmodified	1758.8465	0.84646606	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	59.648	58.81	2;3	7.607E-07	51845	160511_QHF_FH_JSI10i_2	123.38	104.55			7.1777	7.1165	19.884	4	4	Median	7.0134	5.9689	NaN	1	1	Median	5.5226	6.7987	NaN	1	1	Median	7.3459	7.449	NaN	1	1	Median	8.5105	9.5589	NaN	1	1	Median	502260000	118940000	383320000	82736000	18195000	64541000	133250000	29202000	104050000	175840000	52784000	123060000	110430000	18760000	91674000	16166	1411	15332	97989;97990;97991;97992;97993	132120;132121;132122;132123;132124	132124			5	
FLQEHGSDSFLAEHK	1	Unmodified	1743.8216	0.82164829	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		8	10						6	3	5	8	8	41.621	38.9	2;3;4	3.8332E-08	33638	160511_QHF_FH_JSI11i_2	133.86	122.06			0.83077	0.85486	54.9	23	14	Median	1.1091	0.94498	19.471	3	1	Median	0.85268	1.0334	30.074	4	2	Median	0.81705	0.79198	63.358	8	6	Median	0.7486	0.81864	68.909	8	5	Median	7063700000	3820400000	3243300000	194440000	89653000	104790000	505370000	294680000	210680000	2506200000	1331000000	1175200000	3857700000	2105000000	1752700000	16167	2158	15333	97994;97995;97996;97997;97998;97999;98000;98001;98002;98003;98004;98005;98006;98007;98008;98009;98010;98011;98012;98013;98014;98015;98016;98017	132125;132126;132127;132128;132129;132130;132131;132132;132133;132134;132135;132136;132137;132138;132139;132140;132141;132142;132143;132144;132145;132146;132147;132148;132149;132150;132151;132152;132153;132154;132155;132156;132157;132158	132142			34	
FLQEHGSDSFLAEHKLLGNIK	2	Acetyl (K)	2424.2438	0.24375911	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.071	69.757	4	2.1109E-17	38171	160513_QHF_FH_JSI11Kac_6	131.77	117.76			0.39458	0.37092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39458	0.37092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78083000	61222000	16861000	0	0	0	0	0	0	78083000	61222000	16861000	0	0	0	16168	2158	15334	98018	132159	132159	2263		1	
FLQEHLAPK	1	Unmodified	1081.592	0.59202969	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	29.035	28.079	2;3	0.00012595	23714	160511_QHF_FH_JSI12i_2	88.496	75.968			1.3778	1.3919	126.69	8	8	Median	1.4794	1.2579	109.93	2	2	Median	2.7947	3.4627	NaN	1	1	Median	1.3098	1.301	264.18	2	2	Median	0.63888	0.70793	99.872	3	3	Median	511050000	215240000	295800000	161180000	67792000	93383000	79864000	24010000	55854000	93318000	44849000	48469000	176690000	78592000	98097000	16169	1277	15335	98019;98020;98021;98022;98023;98024;98025;98026	132160;132161;132162;132163;132164;132165;132166;132167	132160			8	
FLQESNVLYQHNLR	0	Unmodified	1759.9006	0.90056731	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	52.962	52.347	3	7.5672E-07	44789	160511_QHF_FH_JSI12i_3	113.53	102.74			0.50025	0.49728	33.258	5	5	Median	NaN	NaN	NaN	0	0	Median	0.22187	0.27213	NaN	1	1	Median	0.49855	0.48067	4.8031	2	2	Median	0.54782	0.58454	21.502	2	2	Median	401120000	265640000	135490000	0	0	0	131450000	109240000	22204000	161160000	91458000	69699000	108520000	64938000	43583000	16170	1500	15336	98027;98028;98029;98030;98031	132168;132169;132170;132171;132172	132172			5	
FLQFAYFK	1	Unmodified	1062.5539	0.55385327	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.17		3	6						4	4	4	3	2	80.416	77.386	2	0.00018689	70644	160511_QHF_FH_JSI10i_2	135.87	113.73			0.85002	0.96701	78.074	13	10	Median	0.87396	0.7223	88.988	4	3	Median	1.0019	1.2081	52.995	4	3	Median	0.85002	0.80456	73.962	3	2	Median	1.4848	1.5322	156.28	2	2	Median	3248100000	1627500000	1620600000	951520000	443660000	507860000	999390000	562920000	436470000	978870000	540350000	438520000	318310000	80583000	237730000	16171	561	15337	98032;98033;98034;98035;98036;98037;98038;98039;98040;98041;98042;98043;98044	132173;132174;132175;132176;132177;132178;132179;132180;132181;132182;132183;132184;132185;132186	132182			14	
FLQFFKHSSPK	2	Acetyl (K)	1406.7347	0.73467118	3914	Q92973	TNPO1	Transportin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	68.68	59.629	3	0.0079681	31336	160513_QHF_FH_JSI12Kac_6	52.132	39.986			0.338	0.36457	77.726	3	3	Median	NaN	NaN	NaN	0	0	Median	0.64949	0.76668	NaN	1	1	Median	0.17093	0.16207	NaN	1	1	Median	0.338	0.36457	NaN	1	1	Median	136910000	115500000	21415000	0	0	0	47014000	33074000	13941000	74428000	70595000	3832300	15469000	11827000	3641700	16172	3914	15338	98045;98046;98047	132187;132188;132189	132188	2999		3	
FLQFVTGTSK	1	Unmodified	1126.6023	0.60226003	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.56		7	1						2	2	4	2	2	59.043	56.533	2	1.7431E-05	48782	160511_QHF_FH_JSI11i_2	149.72	143.27			0.89862	0.89007	205.85	10	9	Median	7.4859	6.4736	104.07	2	2	Median	0.21525	0.24948	217.85	4	4	Median	1.2062	1.218	284.92	2	1	Median	1.1141	1.2344	287.2	2	2	Median	896250000	484660000	411590000	117360000	13487000	103880000	258280000	159540000	98744000	294330000	178350000	115990000	226280000	133290000	92986000	16173	3290	15339	98048;98049;98050;98051;98052;98053;98054;98055;98056;98057	132190;132191;132192;132193;132194;132195;132196;132197;132198;132199	132195			10	
FLQGFMAPK	1	Unmodified	1037.5368	0.536823	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.386	58.462	2	1.3681E-05	50075	160511_QHF_FH_JSI12i_2	109.86	58.008			1.2395	1.3212	22.685	4	0	Median	1.1517	0.98024	NaN	1	0	Median	1.0514	1.2709	NaN	1	0	Median	1.3339	1.3735	NaN	1	0	Median	1.5397	1.6976	NaN	1	0	Median	513270000	238470000	274800000	83815000	35288000	48527000	116460000	58920000	57540000	185590000	80181000	105410000	127410000	64078000	63331000	16174	5330	15340	98058;98059;98060;98061	132200;132201;132202	132200			3	
FLQGLVYLIGNLMGLALAVYK	1	Unmodified	2295.3065	0.3064827	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		107.17	97.844	3	1.6468E-07	56435	160513_QHF_FH_JSI9Kac_6	123.41	115.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16477000	6399800	10077000	10077000	0	10077000	0	0	0	6399800	6399800	0	0	0	0	16175	2892	15341	98062;98063	132203;132204	132204			2	
FLQLFGTK	1	Unmodified	952.5382	0.53820321	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	69.132	68.157	2	0.0042139	58757	160511_QHF_FH_JSI12i_2	76.478	31.756			0.084339	0.088958	121.49	5	5	Median	0.10269	0.088958	NaN	1	1	Median	0.055315	0.068711	NaN	1	1	Median	0.07479	0.074188	NaN	1	1	Median	0.30662	0.33282	181.37	2	2	Median	132940000	104410000	28536000	14279000	12328000	1950500	24413000	22799000	1613700	29377000	27858000	1519600	64874000	41421000	23452000	16176	4165	15342	98064;98065;98066;98067;98068	132205;132206;132207;132208;132209	132206			5	
FLQLGAK	1	Unmodified	775.45922	0.4592246	5477	Q9UQ90	SPG7	Paraplegin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			38.335	37.369	2	0.029706	32885	160511_QHF_FH_JSI10i_2	54.525	28.416			0.15049	0.18691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15049	0.18691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10596000	9579900	1016500	0	0	0	10596000	9579900	1016500	0	0	0	0	0	0	16177	5477	15343	98069	132210	132210			1	
FLQLLCENHNR	0	Unmodified	1442.7089	0.70886714	2549;2547;2546	Q14571;Q14573;Q14643	ITPR2;ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0		By MS/MS			3	0			1								1			50.433	48.865	3	0.0032003	40831	160511_QHF_FH_JSI10i_3	36.32	23.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16178	2546;2547;2549	15344	98070	132211	132211			1	
FLQLTPER	0	Unmodified	1002.5498	0.54983053	180	O14618	CCS	Copper chaperone for superoxide dismutase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	47.33	46.341	2	0.0019525	39827	160511_QHF_FH_JSI12i_2	83.753	31.116			0.40228	0.4283	91.244	3	2	Plateau	1.8203	1.5759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71906	0.71792	NaN	1	1	Median	0.22505	0.25551	NaN	1	0	Median	288020000	145000000	143020000	79108000	32244000	46864000	0	0	0	143990000	64110000	79883000	64922000	48649000	16273000	16179	180	15345	98071;98072;98073	132212;132213;132214	132212			3	
FLQNLVPHR	0	Unmodified	1122.6298	0.62981218	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			46.408	44.83	3	0.003581	37400	160511_QHF_FH_JSI10i_3	42.075	32.717			0.37315	0.43934	117.69	3	3	Median	0.30411	0.25237	NaN	1	1	Median	0.87685	1.0299	120.48	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52585000	28786000	23799000	17197000	12567000	4629000	35388000	16218000	19170000	0	0	0	0	0	0	16180	5034	15346	98074;98075;98076	132215;132216;132217	132216			3	
FLQNSLGAVPSPIDCYLCNR	0	Unmodified	2323.1089	0.10892188	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.307	94.973	3	0.00074913	83321	160511_QHF_FH_JSI11i_2	44.382	40.72			0.89531	0.93618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89531	0.93618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21973000	11865000	10108000	0	0	0	0	0	0	21973000	11865000	10108000	0	0	0	16181	1397	15347	98077	132218	132218			1	
FLQPVHK	1	Unmodified	867.49667	0.49667274	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	16.605	16.63	3	0.044898	13243	160511_QHF_FH_JSI12i_3	28.423	16.067			2.3382	2.2764	23.674	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.019	1.9255	NaN	1	1	Median	2.7078	2.6913	NaN	1	1	Median	462350000	246780000	215570000	0	0	0	0	0	0	247220000	156880000	90338000	215130000	89898000	125230000	16182	2675	15348	98078;98079	132219;132220	132220			2	
FLQPVQK	1	Unmodified	858.49634	0.49633839	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	25.522	24.573	2	0.0075188	21027	160511_QHF_FH_JSI9i_2	88.734	72.58			1.6032	1.5036	86.764	6	5	Median	2.1245	1.8334	NaN	1	1	Median	0.8495	1.0366	137.69	2	2	Median	1.2098	1.2332	NaN	1	0	Median	1.0349	1.1553	128.19	2	2	Median	1011100000	524580000	486540000	122010000	57079000	64926000	263420000	143380000	120040000	290270000	161500000	128770000	335430000	162620000	172810000	16183	2674	15349	98080;98081;98082;98083;98084;98085;98086	132221;132222;132223;132224;132225;132226;132227;132228	132223			8	
FLQQMQQEQIIQVK	1	Unmodified	1759.9291	0.92909025	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	66.469	65.452	2	8.5236E-41	57951	160511_QHF_FH_JSI10i_2	175.91	140.49			0.33827	0.19363	56.029	4	4	Linear	0.22563	0.19151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50714	0.5181	NaN	1	1	Median	0.33692	0.37843	64.252	2	2	Median	162360000	126060000	36306000	65226000	58732000	6493600	0	0	0	28029000	14082000	13947000	69106000	53241000	15865000	16184	1512	15350	98087;98088;98089;98090;98091	132229;132230;132231;132232;132233	132233			5	
FLQTIVK	1	Unmodified	847.51674	0.51673948	2549;2546	Q14571;Q14643	ITPR2;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0	By MS/MS				2	0		1								1				42.701	41.651	2	0.043975	36451	160511_QHF_FH_JSI9i_2	48.787	22.96			0.077376	0.0636	NaN	1	1	Median	0.077376	0.0636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	401850000	370780000	31068000	401850000	370780000	31068000	0	0	0	0	0	0	0	0	0	16185	2546;2549	15351	98092	132234	132234			1	
FLQVHASSGHK	1	Unmodified	1209.6255	0.62545508	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	11.018	11.107	3	0.00098234	8400	160511_QHF_FH_JSI12i_3	64.64	51.684			0.54379	0.5434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54379	0.5434	NaN	1	1	Median	124710000	71476000	53231000	0	0	0	0	0	0	0	0	0	124710000	71476000	53231000	16186	4387	15352	98093	132235	132235			1	
FLRENPYYDSR	0	Unmodified	1458.6892	0.68917755	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			33.871	32.545	3	0.00015364	26446	160511_QHF_FH_JSI9i_3	71.176	56.3			1.3116	0.67783	74.917	4	1	Linear	0.85036	0.69858	91.68	3	1	Plateau	1.142	1.3114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	275910000	124340000	151560000	216610000	98125000	118480000	59297000	26218000	33079000	0	0	0	0	0	0	16187	2155	15353	98094;98095;98096;98097	132236;132237;132238;132239;132240;132241	132238			6	
FLREPVVTPQDLEGPGR	0	Unmodified	1909.0058	0.005760665	3017	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			63.843	62.337	3	7.8322E-05	51188	160511_QHF_FH_JSI9i_3	72.433	66.529			1.0205	0.83743	NaN	1	0	Median	1.0205	0.83743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32096000	13047000	19049000	27486000	13047000	14439000	4610200	0	4610200	0	0	0	0	0	0	16188	3017	15354	98098;98099	132242;132243;132244;132245	132244			4	
FLREWVESMGGK	1	Unmodified	1437.7075	0.70747015	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							2	3	3		61.99	61.045	2;3	0.00079914	53588	160511_QHF_FH_JSI11i_3	70.622	49.064			1.3472	1.1885	137.87	8	7	Median	3.3472	2.737	146.54	2	1	Median	1.8729	2.1671	148.95	3	3	Plateau	1.5386	1.4546	167.58	3	3	Median	NaN	NaN	NaN	0	0	Median	380380000	185400000	194980000	50030000	13292000	36738000	87054000	40903000	46151000	243290000	131200000	112090000	0	0	0	16189	1707	15355	98100;98101;98102;98103;98104;98105;98106;98107	132246;132247;132248;132249;132250;132251;132252;132253	132246			8	
FLSAEEYQQK	1	Unmodified	1241.5928	0.59281755	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	33.076	32.217	2	2.3114E-05	27926	160511_QHF_FH_JSI9i_2	98.033	67.779			1.3593	1.6735	70.527	7	6	Median	1.2521	1.0635	100.94	2	1	Median	1.4847	1.7959	9.981	2	2	Median	1.5044	1.4946	63.254	2	2	Median	0.38673	0.4194	NaN	1	1	Median	385220000	185350000	199870000	111240000	49990000	61255000	101540000	44209000	57327000	118600000	59633000	58967000	53838000	31522000	22316000	16190	4157	15356	98108;98109;98110;98111;98112;98113;98114;98115	132254;132255;132256;132257;132258;132259;132260;132261;132262	132260			9	
FLSAIVSSVDK	1	Unmodified	1164.639	0.63903946	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.24		7	6				1	4	3	4	6	6	5	67.946	63.656	2	2.9336E-12	32752	160513_QHF_FH_JSI9Kac_5	148.32	123.55			15.8	15.729	328.38	21	21	Median	21.124	18.209	321.4	4	4	Median	12.829	15.383	289.94	6	6	Median	13.428	13.502	394.68	6	6	Median	12.821	14.525	382.7	5	5	Median	4782200000	2061600000	2720600000	661560000	290900000	370670000	958270000	463470000	494790000	1739500000	705660000	1033800000	1422800000	601570000	821270000	16191	1600	15357	98116;98117;98118;98119;98120;98121;98122;98123;98124;98125;98126;98127;98128;98129;98130;98131;98132;98133;98134;98135;98136	132263;132264;132265;132266;132267;132268;132269;132270;132271;132272;132273;132274;132275;132276;132277;132278;132279;132280;132281;132282;132283;132284;132285;132286;132287;132288;132289	132271			27	
FLSAVLAAQK	1	Unmodified	1046.6124	0.61243078	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	57.649	54.39	2	0.00028314	48158	160511_QHF_FH_JSI11i_3	88.948	55.151			0.051557	0.050101	19.636	2	2	Median	0.071328	0.057564	NaN	1	1	Median	0.037266	0.043606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130050000	128260000	1797100	25183000	23856000	1326800	27350000	26879000	470300	5982600	5982600	0	71538000	71538000	0	16192	2179	15358	98137;98138;98139;98140;98141	132290;132291;132292;132293;132294	132290			5	
FLSDFRDLMSWINGIR	0	Unmodified	1968.988	0.98800211	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.67	91.949	3	0.0028586	53598	160513_QHF_FH_JSI10Kac_6	54.953	41.835			1.0154	1.1738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0154	1.1738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	190630000	88633000	102000000	0	0	0	190630000	88633000	102000000	0	0	0	0	0	0	16193	2470	15359	98142	132295	132295			1	
FLSDPQVHTVLVER	0	Unmodified	1638.873	0.87295558	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							3	2	3	3	57.156	56.358	2;3	1.5182E-30	48309	160511_QHF_FH_JSI12i_2	170.74	151.91			0.89512	1.0031	21.901	11	5	Median	0.99552	0.86501	30.067	3	3	Median	0.89099	1.0876	3.2598	2	0	Median	0.75882	0.7625	30.706	3	1	Plateau	0.83003	0.93265	13.26	3	1	Plateau	1617700000	755510000	862190000	345500000	162050000	183440000	477030000	222310000	254720000	451770000	194860000	256910000	343400000	176280000	167120000	16194	2517	15360	98143;98144;98145;98146;98147;98148;98149;98150;98151;98152;98153	132296;132297;132298;132299;132300;132301;132302;132303;132304;132305;132306;132307;132308;132309	132299			14	
FLSEMLK	1	Unmodified	866.45718	0.45717569	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	53.717	52.668	2	0.013281	45244	160511_QHF_FH_JSI12i_2	70.912	37.174			2.5702	2.1861	217.38	5	4	Median	2.5702	2.1861	NaN	1	0	Median	0.072631	0.089455	NaN	1	1	Median	6.3909	6.4814	NaN	1	1	Median	0.89779	0.9873	299.64	2	2	Median	1065800000	502570000	563180000	142820000	33484000	109330000	206960000	161600000	45368000	312360000	75931000	236430000	403610000	231560000	172050000	16195	1085	15361	98154;98155;98156;98157;98158	132310;132311;132312;132313;132314	132311			5	
FLSESLMWHISSQVAELK	1	Unmodified	2104.0663	0.066312011	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	90.045	82.464	3	5.5735E-05	47366	160513_QHF_FH_JSI10Kac_6	135.09	123.3			0.29823	0.3574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29823	0.3574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75916000	66485000	9430200	0	0	0	65604000	56174000	9430200	0	0	0	10311000	10311000	0	16196	5507	15362	98159;98160	132315;132316	132316			2	
FLSESVLAVAGDEEVIR	0	Unmodified	1832.952	0.95199376	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.737	89.01	3	0.00025119	76874	160511_QHF_FH_JSI12i_2	54.813	42.789			2.2157	2.2764	42.027	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0344	3.0641	NaN	1	1	Median	1.6179	1.6912	NaN	1	1	Median	40610000	12760000	27850000	0	0	0	0	0	0	23765000	6708300	17056000	16845000	6052100	10793000	16197	5070	15363	98161;98162	132317;132318	132317			2	
FLSFMNLTCAVGTTGQK	1	Unmodified	1873.9066	0.90664025	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		94.884	94.884	3	0.010481	84573	160511_QHF_FH_JSI11i_3	42.708	33.544			1.1457	1.0968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1457	1.0968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10505000	4799500	5705000	0	0	0	0	0	0	10505000	4799500	5705000	0	0	0	16198	3282	15364	98163	132319	132319			1	
FLSGIINFIHFR	0	Unmodified	1462.8085	0.80850483	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	3	1	1	91.081	83.444	2;3	2.159E-20	46177	160513_QHF_FH_JSI9Kac_6	178.67	148.66			0.96427	0.97594	224.22	6	6	Median	1.1083	0.96533	326.96	2	2	Median	1.048	1.226	368.29	2	2	Median	1.9217	1.8452	NaN	1	1	Median	0.48385	0.51618	NaN	1	1	Median	1908400000	602300000	1306100000	556420000	241670000	314750000	961420000	178580000	782840000	255770000	109610000	146170000	134750000	72440000	62309000	16199	4557	15365	98164;98165;98166;98167;98168;98169;98170	132320;132321;132322;132323;132324;132325;132326	132322			7	
FLSGSWSEFSTQPENFLK	1	Unmodified	2102.9949	0.99492121	4450	Q9BUR4	WRAP53	Telomerase Cajal body protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	100.33	100.19	2	3.9511E-11	88608	160511_QHF_FH_JSI10i_2	139.46	119.72			0.65223	0.66618	15.799	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.52444	0.67252	NaN	1	1	Median	0.65223	0.66618	NaN	1	1	Median	0.78185	0.87991	NaN	1	1	Median	42899000	28285000	14614000	0	0	0	13117000	9840200	3276900	20508000	13910000	6597700	9273700	4534300	4739400	16200	4450	15366	98171;98172;98173;98174	132327;132328;132329;132330	132330			4	
FLSHLIEK	1	Unmodified	985.55967	0.55966693	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		38.806	38.806	3	0.013015	34096	160511_QHF_FH_JSI11i_3	44.203	33.789			8.7003	8.2797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.7003	8.2797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41872000	4144700	37727000	0	0	0	0	0	0	41872000	4144700	37727000	0	0	0	16201	3516	15367	98175;98176	132331;132332	132331			2	
FLSHLVDGVK	1	Unmodified	1113.6182	0.61824444	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	48.063	47.197	3	0.00025936	39802	160511_QHF_FH_JSI12i_3	78.136	33.383			1.82	2.2242	97.043	3	3	Median	NaN	NaN	NaN	0	0	Median	1.82	2.2242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.6707	3.7737	130.27	2	2	Median	216140000	97470000	118670000	0	0	0	38234000	18367000	19868000	0	0	0	177910000	79104000	98806000	16202	5327	15368	98177;98178;98179	132333;132334;132335	132335			3	
FLSHSLVELLNQISPTFK	1	Unmodified	2072.1306	0.13062683	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.2	6.37			3						2	1	2	1	1	99.053	95.22	3	2.5509E-05	83549	160511_QHF_FH_JSI9i_3	75.143	60.671			0.39417	0.47733	37.229	4	1	Linear	1.4725	1.2135	NaN	1	0	Median	0.41845	0.49562	NaN	1	0	Median	0.8163	0.76117	NaN	1	0	Median	0.82681	0.88639	NaN	1	1	Median	557300000	317870000	239430000	67927000	26845000	41083000	220740000	155390000	65350000	110920000	56361000	54562000	157710000	79281000	78431000	16203	485	15369	98180;98181;98182;98183;98184	132336;132337;132338;132339	132337			4	
FLSHSLVELLNQISPTFKK	2	Unmodified	2200.2256	0.22558985	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	91.796	84.108	3;4	5.3331E-26	45124	160513_QHF_FH_JSI12Kac_6	157.51	144.34			0.63953	0.73662	132.51	5	3	Median	1.2527	1.0676	103.97	2	2	Median	0.88051	1.0134	45.112	2	1	Median	NaN	NaN	NaN	0	0	Median	0.067876	0.071475	NaN	1	0	Median	446840000	277020000	169810000	80357000	37580000	42777000	292470000	170150000	122330000	0	0	0	74009000	69298000	4710400	16204	485	15370	98185;98186;98187;98188;98189	132340;132341;132342;132343;132344	132342			4	
FLSLDYIPQR	0	Unmodified	1250.6659	0.66592292	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	73.956	73.107	2	0.00015996	65028	160511_QHF_FH_JSI10i_2	95.502	68.248			0.81839	0.93293	21.134	5	4	Median	1.1426	1.0081	NaN	1	1	Median	0.73578	0.89895	14.889	2	2	Median	0.93306	0.93293	NaN	1	0	Median	0.53088	0.60753	NaN	1	1	Median	197970000	107980000	89992000	27673000	13700000	13973000	76537000	42020000	34517000	45743000	23736000	22007000	48020000	28525000	19494000	16205	2575	15371	98190;98191;98192;98193;98194	132345;132346;132347;132348;132349	132349			5	
FLSLPDTWMK	1	Unmodified	1236.6213	0.62128091	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.731	90.037	2	0.00021599	79200	160511_QHF_FH_JSI11i_2	92.062	64.32			0.46118	0.4774	7.4767	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45405	0.45281	NaN	1	1	Median	0.46843	0.50331	NaN	1	1	Median	45856000	26739000	19116000	0	0	0	0	0	0	31522000	17822000	13699000	14334000	8916700	5417200	16206	5350	15372	98195;98196	132350;132351	132351			2	
FLSLYGDQIDMHRK	1	Unmodified	1721.8559	0.85592531	4008	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.635	55.635	4	4.4676E-05	49172	160511_QHF_FH_JSI11i_3	89.629	81.453			1.0949	1.0326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0949	1.0326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75616000	27805000	47811000	0	0	0	0	0	0	75616000	27805000	47811000	0	0	0	16207	4008	15373	98197	132352	132352			1	
FLSNGHVTIPGQQDK	1	Unmodified	1639.8318	0.83181904	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.29		14	16						7	6	11	8	12	45.213	42.834	2;3	1.2669E-18	37790	160511_QHF_FH_JSI11i_3	214.88	183.04			1.3285	1.4173	83.31	30	28	Median	2.1034	1.8119	64.782	6	6	Median	1.2622	1.456	73.78	9	9	Median	1.3285	1.3244	79.722	6	5	Median	1.2586	1.3797	112.92	9	8	Median	7915800000	3655800000	4260000000	846500000	386490000	460010000	1618700000	753590000	865100000	2931000000	1444600000	1486400000	2519600000	1071100000	1448500000	16208	1436	15374	98198;98199;98200;98201;98202;98203;98204;98205;98206;98207;98208;98209;98210;98211;98212;98213;98214;98215;98216;98217;98218;98219;98220;98221;98222;98223;98224;98225;98226;98227;98228;98229;98230;98231;98232;98233;98234	132353;132354;132355;132356;132357;132358;132359;132360;132361;132362;132363;132364;132365;132366;132367;132368;132369;132370;132371;132372;132373;132374;132375;132376;132377;132378;132379;132380;132381;132382;132383;132384;132385;132386;132387;132388;132389;132390;132391;132392;132393;132394;132395;132396;132397;132398;132399	132356			47	
FLSPEFIPR	0	Unmodified	1104.5968	0.59678072	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.245	69.952	2	7.425E-05	60363	160511_QHF_FH_JSI12i_2	114.5	77.477			1.3795	1.5299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3795	1.5299	NaN	1	1	Median	205390000	77276000	128110000	0	0	0	0	0	0	0	0	0	205390000	77276000	128110000	16209	1656	15375	98235	132400	132400			1	
FLSPLLALFVEGVAAVLSTTK	1	Unmodified	2175.2555	0.25549299	5133	Q9NYQ6	CELSR1	Cadherin EGF LAG seven-pass G-type receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	106.82	98.911	2;3	1.5429E-28	59881	160513_QHF_FH_JSI10Kac_6	149.94	140.54			1.2924	1.1002	32.629	3	0	Median	1.2924	1.1002	NaN	1	0	Median	1.1241	1.3332	43.398	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	373770000	183490000	190280000	25767000	10576000	15191000	334500000	167970000	166530000	8555000	0	8555000	4946400	4946400	0	16210	5133	15376	98236;98237;98238;98239;98240;98241	132401;132402;132403;132404;132405;132406;132407;132408;132409	132407			9	
FLSPLLGLFIQAVAATLATPPDHVVVFNVQR	0	Unmodified	3332.8649	0.86490408	4864	Q9HCU4	CELSR2	Cadherin EGF LAG seven-pass G-type receptor 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.17	99.449	4	8.337E-10	58864	160513_QHF_FH_JSI10Kac_6	81.532	76.046			0.9862	1.1851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9862	1.1851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150920000	81048000	69873000	0	0	0	150920000	81048000	69873000	0	0	0	0	0	0	16211	4864	15377	98242	132410	132410			1	
FLSPPALQGYVAWLR	0	Unmodified	1716.9352	0.9351619	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	94.557	86.183	2;3	1.0589E-87	48348	160513_QHF_FH_JSI9Kac_6	234.92	205.45			1.0153	0.99937	4.0619	8	0	Median	1.1212	0.96779	5.0168	2	0	Median	0.83029	0.9839	1.7296	2	0	Median	1.0634	1.0083	4.925	2	0	Median	0.97998	1.0424	0.72086	2	0	Median	2841900000	1486100000	1355700000	858460000	418200000	440260000	863380000	442700000	420680000	701050000	378160000	322900000	418960000	247090000	171880000	16212	4361	15378	98243;98244;98245;98246;98247;98248;98249;98250	132411;132412;132413;132414;132415;132416;132417;132418;132419;132420;132421;132422;132423;132424;132425;132426;132427	132417			17	
FLSPQDTFEALK	1	Unmodified	1394.7082	0.70818166	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.3	2	4						3		2	2	3	2	79.45	75.537	2	4.0887E-11	67206	160511_QHF_FH_JSI12i_2	151.22	140.05			1.081	1.1641	77.921	9	2	Median	0.35302	0.29739	110.11	2	0	Median	1.2317	1.4704	33.025	2	2	Median	1.2087	1.2213	14.226	3	0	Plateau	1.2743	1.4073	24.358	2	0	Median	686970000	350010000	336950000	62003000	51331000	10672000	202160000	91778000	110380000	277510000	138270000	139240000	145300000	68631000	76666000	16213	4996	15379	98251;98252;98253;98254;98255;98256;98257;98258;98259	132428;132429;132430;132431;132432;132433;132434;132435;132436;132437;132438;132439	132431			12	
FLSPVVPNYDNVHPNYHK	1	Unmodified	2139.0538	0.05377349	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							4	4	3	2	59.315	58.358	3;4	1.0752E-07	51248	160511_QHF_FH_JSI11i_3	119.56	115.9			0.96846	0.94945	25.98	13	2	Median	1.3784	1.1258	19.251	4	2	Median	0.95633	1.1431	28.593	4	0	Median	0.90246	0.89981	12.512	3	0	Median	0.78146	0.83232	18.32	2	0	Median	4476200000	2027700000	2448500000	374100000	144360000	229730000	660270000	340060000	320210000	1690900000	745990000	944890000	1750900000	797270000	953650000	16214	5494	15380	98260;98261;98262;98263;98264;98265;98266;98267;98268;98269;98270;98271;98272	132440;132441;132442;132443;132444;132445;132446;132447;132448;132449;132450;132451;132452;132453;132454;132455;132456;132457;132458;132459;132460;132461;132462;132463;132464;132465;132466;132467;132468;132469	132441			30	
FLSPVVPNYDNVHPNYHKEPFLQQLK	2	Acetyl (K)	3164.6084	0.60835504	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.709	74.464	4	7.9849E-43	39266	160513_QHF_FH_JSI12Kac_6	163.62	145.83			0.86842	0.93708	23.851	4	0	Median	1.186	0.99908	NaN	1	0	Median	0.7339	0.87892	NaN	1	0	Median	0.66063	0.63528	NaN	1	0	Median	1.0276	1.0967	NaN	1	0	Median	837170000	478460000	358710000	127730000	56173000	71561000	311490000	194400000	117100000	262940000	160570000	102370000	135010000	67323000	67683000	16215	5494	15381	98273;98274;98275;98276	132470;132471;132472;132473;132474;132475;132476	132473	3450		7	
FLSQESGVAQTLK	1	Unmodified	1406.7405	0.74054442	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	48.95	47.552	2	0.00069087	40574	160511_QHF_FH_JSI12i_2	83.397	60.657			0.65427	0.71554	155.47	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65427	0.71554	155.47	2	2	Median	35052000	17031000	18021000	0	0	0	0	0	0	0	0	0	35052000	17031000	18021000	16216	3515	15382	98277;98278	132477;132478	132477			2	
FLSQLEITFR	0	Unmodified	1252.6816	0.68157298	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.607	82.513	2	0.0051791	71344	160511_QHF_FH_JSI12i_2	56.432	25.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16217	1945	15383	98279	132479	132479			1	
FLSQLLER	0	Unmodified	1004.5655	0.56548059	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.35	60.35	2	0.020633	53599	160511_QHF_FH_JSI11i_3	45.382	27.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16218	3915	15384	98280	132480	132480			1	
FLSQPFQVAEVFTGHMGK	1	Oxidation (M)	2037.9982	0.99823245	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.77	6.7		3	4						6	4	2	3	4	87.537	83.296	3	2.9903E-12	73314	160511_QHF_FH_JSI9i_3	150.68	141.86			0.81743	0.81125	40.699	13	9	Median	1.2453	1.0199	42.088	4	3	Median	0.96236	1.104	6.6043	2	0	Median	0.81743	0.76866	28.36	3	2	Plateau	0.63432	0.675	48.015	4	4	Median	3615900000	1973600000	1642300000	850910000	370050000	480850000	667010000	295230000	371780000	1100400000	602820000	497630000	997530000	705470000	292050000	16219	851	15385	98281;98282;98283;98284;98285;98286;98287;98288;98289;98290;98291;98292;98293	132481;132482;132483;132484;132485;132486;132487;132488;132489;132490;132491;132492;132493;132494;132495;132496;132497;132498;132499;132500;132501;132502;132503;132504;132505	132492		369	25	
FLSQPFQVAEVFTGHMGK	1	Unmodified	2022.0033	0.003317824	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	4.7		9	15						4	7	7	6	8	98.018	96.428	2;3	1.1792E-44	44590	160513_QHF_FH_JSI11Kac_6	186.97	161.1			0.90955	0.91467	30.792	22	9	Median	1.2078	0.95517	29.134	5	2	Median	0.73748	0.87974	24.196	6	3	Median	0.89254	0.82879	34.621	5	2	Median	0.89612	0.90209	35.545	6	2	Median	19258000000	8557800000	10700000000	4801100000	1972300000	2828800000	6283400000	3359800000	2923600000	1275100000	631910000	643220000	6898500000	2593700000	4304800000	16220	851	15385	98294;98295;98296;98297;98298;98299;98300;98301;98302;98303;98304;98305;98306;98307;98308;98309;98310;98311;98312;98313;98314;98315;98316;98317;98318;98319;98320;98321	132506;132507;132508;132509;132510;132511;132512;132513;132514;132515;132516;132517;132518;132519;132520;132521;132522;132523;132524;132525;132526;132527;132528;132529;132530;132531;132532;132533;132534;132535;132536;132537;132538;132539;132540;132541;132542;132543;132544;132545;132546;132547;132548;132549;132550;132551;132552;132553;132554;132555;132556;132557;132558;132559;132560;132561;132562;132563;132564;132565;132566	132521			60	
FLSSAAAVSK	1	Unmodified	979.53385	0.53384611	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	29.489	28.584	2	0.00063586	24051	160511_QHF_FH_JSI11i_2	85.807	57.589			9.8573	8.9703	169.72	3	3	Plateau	5.3093	4.4385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.51	10.52	NaN	1	1	Median	0.36334	0.398	NaN	1	1	Median	185170000	59580000	125590000	62617000	10930000	51687000	0	0	0	60034000	6294100	53740000	62522000	42356000	20166000	16221	1296	15386	98322;98323;98324	132567;132568;132569	132569			3	
FLSSIGGTLYEVGKPEMQQK	2	Unmodified	2211.1246	0.12455517	3541	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	74.369	74.079	3	0.0011215	64297	160511_QHF_FH_JSI12i_3	49.655	33.426			1.7737	1.7464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7737	1.7464	NaN	1	1	Median	27560000	10123000	17437000	0	0	0	0	0	0	0	0	0	27560000	10123000	17437000	16222	3541	15387	98325	132570	132570			1	
FLSSSLYTALTEAR	0	Unmodified	1557.8039	0.80387296	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			85.811	84.639	2	0.00025678	70814	160511_QHF_FH_JSI10i_3	72.006	48.019			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16223	2755	15388	98326	132571	132571			1	
FLSTEAISIMR	0	Unmodified	1266.6642	0.66420836	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.53		5	1						3	2	2	3	2	74.574	71.358	2	6.6271E-05	62482	160511_QHF_FH_JSI12i_2	101.66	60.677			0.97758	1.0655	48.63	9	5	Median	0.99386	0.84837	31.3	2	1	Median	0.85938	1.015	6.8687	2	1	Median	1.1375	1.0899	32.078	3	1	Median	1.7579	1.967	83.471	2	2	Median	666530000	299550000	366980000	88746000	40676000	48070000	184260000	85338000	98927000	184590000	88728000	95858000	208930000	84807000	124130000	16224	2732	15389	98327;98328;98329;98330;98331;98332;98333;98334;98335	132572;132573;132574;132575;132576;132577;132578;132579;132580	132574			9	
FLSTLLDSFSSSR	0	Unmodified	1458.7355	0.73545904	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	89.993	89.905	2	0.0076416	78808	160511_QHF_FH_JSI9i_2	49.5	19.246			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8343500	8343500	0	0	0	0	0	0	0	0	0	0	8343500	8343500	0	16225	610	15390	98336;98337	132581;132582	132581			2	
FLSVLER	0	Unmodified	862.49125	0.49125301	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	52.586	51.903	2	0.010844	45862	160511_QHF_FH_JSI10i_2	79.451	44.559			5.2264	4.8267	45.71	4	4	Median	5.2261	4.47	NaN	1	1	Median	3.6436	4.5017	NaN	1	1	Median	11.396	11.62	NaN	1	1	Median	5.2267	5.1751	NaN	1	1	Median	360270000	94061000	266210000	88276000	23398000	64878000	70376000	26077000	44298000	75647000	10260000	65387000	125970000	34325000	91643000	16226	862	15391	98338;98339;98340;98341	132583;132584;132585;132586	132585			4	
FLSVLERQ	0	Unmodified	990.54983	0.54983053	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	52.709	51.858	2	0.0010228	43283	160511_QHF_FH_JSI10i_3	126.28	45.816			0.72	0.74191	108.87	8	8	Median	0.67699	0.56326	53.956	2	2	Median	0.54225	0.66726	67.028	3	3	Median	4.97	4.8501	80.933	2	2	Median	0.46942	0.47958	NaN	1	1	Median	1499400000	808480000	690900000	341150000	227870000	113280000	665300000	403690000	261610000	240060000	70622000	169440000	252870000	106300000	146570000	16227	862	15392	98342;98343;98344;98345;98346;98347;98348;98349	132587;132588;132589;132590;132591;132592;132593;132594	132588			8	
FLSVSFMSQLLSSNNFLK	1	Unmodified	2061.0605	0.060498352	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.084	92.363	3	4.0604E-05	53926	160513_QHF_FH_JSI10Kac_6	138.91	114.31			0.28194	0.33325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28194	0.33325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	223410000	183250000	40156000	0	0	0	223410000	183250000	40156000	0	0	0	0	0	0	16228	4733	15393	98350	132595	132595			1	
FLSYALIDPTHEGTAEGMENMADAVTHAR	0	Unmodified	3146.4437	0.44373383	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	95.708	95.713	4	4.4967E-06	82868	160511_QHF_FH_JSI12i_3	46.003	44.145			0.72117	0.74499	61.731	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53545	0.49641	NaN	1	1	Median	1.0937	1.1152	57.048	2	1	Median	140340000	65856000	74484000	0	0	0	0	0	0	13385000	9677600	3706900	126960000	56178000	70778000	16229	3838	15394	98351;98352;98353	132596;132597;132598;132599	132597			4	
FLTAFLVQISAHSDQNK	1	Unmodified	1917.9949	0.99486163	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	4	1	2	83.935	76.536	2;3	1.4211E-54	43088	160513_QHF_FH_JSI10Kac_6	238.03	232.05			2.2719	2.72	151.59	5	5	Median	4.7413	4.0515	NaN	1	1	Median	0.77431	0.92359	152.75	2	2	Median	6.6545	6.0969	NaN	1	1	Median	0.21698	0.23272	NaN	1	1	Median	640390000	285760000	354630000	99798000	11909000	87889000	390560000	229990000	160570000	56957000	6269700	50687000	93083000	37592000	55491000	16230	2261	15395	98354;98355;98356;98357;98358;98359;98360;98361	132600;132601;132602;132603;132604;132605;132606;132607;132608	132608			9	
FLTAVNLEHPEMLEK	1	Unmodified	1769.9022	0.9022068	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.287		10	1							1	2	4	4	74.253	73.411	2;3	2.4625E-10	64238	160511_QHF_FH_JSI11i_2	145.55	139.07			0.83144	0.86125	91.335	11	9	Median	0.68224	0.59033	NaN	1	0	Median	0.59853	0.74486	134.59	2	2	Median	0.95556	0.98501	66.198	4	3	Median	1.1073	1.2463	119.96	4	4	Median	2624600000	1529800000	1094800000	286310000	159160000	127150000	730800000	446940000	283860000	941790000	549940000	391850000	665680000	373710000	291970000	16231	5526	15396	98362;98363;98364;98365;98366;98367;98368;98369;98370;98371;98372	132609;132610;132611;132612;132613;132614;132615;132616;132617;132618;132619;132620;132621;132622	132617			14	
FLTDYLNDLQGR	0	Unmodified	1453.7201	0.72014333	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	82.967	81.843	2	0.054702	70778	160511_QHF_FH_JSI12i_2	43.168	29.01			1.1029	1.2019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1029	1.2019	NaN	1	1	Median	15972000	6997500	8974400	0	0	0	0	0	0	0	0	0	15972000	6997500	8974400	16232	3164	15397	98373	132623	132623			1	
FLTEQMMER	0	Unmodified	1183.5366	0.536565	3784	Q8WVM7	STAG1	Cohesin subunit SA-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		49.982	49.241	2	0.010365	43414	160511_QHF_FH_JSI10i_2	59.35	50.391			0.56423	0.62135	13.202	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55736	0.68214	NaN	1	1	Median	0.57119	0.56597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87307000	58642000	28665000	0	0	0	32926000	23540000	9386000	54381000	35102000	19279000	0	0	0	16233	3784	15398	98374;98375	132624;132625	132625			2	
FLTFDSPEGK	1	Unmodified	1139.5499	0.5498901	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.254	55.898	2	0.00031818	47829	160511_QHF_FH_JSI12i_2	78.264	44.713			0.97144	1.1126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97144	1.1126	NaN	1	0	Median	53769000	25585000	28184000	0	0	0	0	0	0	0	0	0	53769000	25585000	28184000	16234	4495	15399	98376	132626	132626			1	
FLTIFNLTHISAEK	1	Unmodified	1632.8875	0.88754301	2563	Q14687	GSE1	Genetic suppressor element 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		85.933	77.702	3	5.754E-05	43018	160513_QHF_FH_JSI11Kac_6	110.38	91.927			1.1995	1.075	129.07	4	4	Median	3.3745	2.874	NaN	1	1	Median	0.33703	0.39798	NaN	1	1	Median	1.4182	1.364	172.74	2	2	Median	NaN	NaN	NaN	0	0	Median	290950000	134940000	156010000	92488000	12046000	80442000	101450000	87259000	14187000	97019000	35634000	61385000	0	0	0	16235	2563	15400	98377;98378;98379;98380	132627;132628;132629;132630	132628			4	
FLTINIMNK	1	Unmodified	1092.6002	0.60015154	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		74.856	73.947	2	0.00024593	65871	160511_QHF_FH_JSI11i_3	98.458	60.298			1.0559	1.0808	43.366	4	4	Median	1.8337	1.5035	NaN	1	1	Median	0.87449	1.0434	58.745	2	2	Median	0.82184	0.77702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126560000	63601000	62960000	21578000	9150300	12427000	47671000	24149000	23522000	57311000	30302000	27010000	0	0	0	16236	2835	15401	98381;98382;98383;98384	132631;132632;132633;132634	132631			4	
FLTLGSK	1	Unmodified	764.44324	0.44324019	339	O43491	EPB41L2	Band 4.1-like protein 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	41.376	40.44	2	0.023579	34586	160511_QHF_FH_JSI12i_2	58.604	10.855			0.4559	0.45372	22.28	3	3	Median	NaN	NaN	NaN	0	0	Median	0.35108	0.4324	NaN	1	1	Median	0.4559	0.45372	NaN	1	1	Median	0.59577	0.65006	NaN	1	1	Median	139730000	83550000	56176000	0	0	0	39996000	26482000	13514000	60671000	32359000	28313000	39058000	24709000	14349000	16237	339	15402	98385;98386;98387	132635;132636;132637	132635			3	
FLTLPPVLHLQLMR	0	Oxidation (M)	1692.9749	0.97491823	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	94.34	89.548	3	1.6327E-11	44878	160513_QHF_FH_JSI9Kac_6	123.28	110.86			1.2472	1.0153	69.84	7	2	Median	1.2727	1.0397	6.2871	2	0	Median	1.7809	2.0744	135.52	2	1	Median	1.8194	1.7143	NaN	1	0	Median	0.8018	0.83274	28.026	2	1	Median	627020000	251840000	375180000	249550000	105750000	143810000	92486000	37408000	55078000	151680000	45311000	106370000	133300000	63376000	69925000	16238	3922	15403	98388;98389;98390;98391;98392;98393;98394	132638;132639;132640;132641;132642;132643;132644;132645;132646;132647	132643		2354	10	
FLTLPPVLHLQLMR	0	Unmodified	1676.98	0.98000361	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	2	3	2	2	94.621	88.232	2;3	3.4374E-32	49183	160513_QHF_FH_JSI10Kac_6	174.73	133.35			0.83419	0.93067	46.495	9	1	Median	0.50036	0.42665	16.438	2	1	Median	1.0325	1.2274	22.382	3	0	Median	0.65792	0.63113	31.183	2	0	Median	0.99862	1.0383	8.4191	2	0	Median	4935900000	2491700000	2444200000	572160000	299390000	272780000	2301300000	1131600000	1169700000	1038900000	555460000	483480000	1023500000	505320000	518230000	16239	3922	15403	98395;98396;98397;98398;98399;98400;98401;98402;98403	132648;132649;132650;132651;132652;132653;132654;132655;132656;132657;132658;132659;132660	132658			13	
FLTNAYDIGHAVIWITAMMGGPSK	1	Unmodified	2592.2869	0.28688625	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.985	90.895	3	5.3662E-42	54537	160513_QHF_FH_JSI10Kac_6	162.27	140.9			1.5877	1.3377	54.927	3	2	Median	1.5877	1.3377	NaN	1	1	Median	0.8909	1.0245	NaN	1	0	Median	3.1184	2.9461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	460150000	179700000	280450000	140180000	52455000	87729000	185870000	102600000	83276000	134090000	24643000	109450000	0	0	0	16240	2588	15404	98404;98405;98406	132661;132662;132663	132663			3	
FLTPIYHPNIDSAGR	0	Unmodified	1699.8682	0.86820455	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	2	3	61.113	60.492	2;3	9.6533E-14	53489	160511_QHF_FH_JSI11i_3	97.836	86.566			1.1564	1.1557	23.419	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1564	1.1557	23.419	3	2	Median	1100100000	578890000	521240000	0	0	0	0	0	0	0	0	0	1100100000	578890000	521240000	16241	4896	15405	98407;98408;98409;98410;98411;98412	132664;132665;132666;132667;132668;132669;132670	132665			7	
FLTVLCSR	0	Unmodified	994.52699	0.52698659	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9	7		3							3	2	3	1		58.724	54.024	2	0.0029335	46821	160511_QHF_FH_JSI11i_2	83.313	36.943			0.63254	0.6608	92.359	6	6	Median	0.81829	0.70557	3.2921	2	2	Median	0.31249	0.37333	135.69	3	3	Plateau	0.43752	0.45035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	512950000	233930000	279020000	80075000	29524000	50551000	247390000	133850000	113530000	185480000	70551000	114930000	0	0	0	16242	932	15406	98413;98414;98415;98416;98417;98418	132671;132672;132673;132674;132675;132676	132672			6	
FLTVMMK	1	Unmodified	868.45507	0.4550672	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.44		8	8					1	8	7	6	6	6	61.189	57.287	2	0.0048454	29763	160513_QHF_FH_JSI12Kac_6	108.24	91.311			4.6462	4.0637	252.97	25	25	Median	4.6462	4.0637	294.66	7	7	Median	0.93561	1.0952	267.04	6	6	Median	0.6995	0.67102	261.53	6	6	Median	0.83951	0.88628	241.96	6	6	Median	14354000000	7517500000	6836800000	2833900000	1325400000	1508500000	3467700000	1841600000	1626100000	4490800000	2504100000	1986700000	3561900000	1846300000	1715600000	16243	1986	15407	98419;98420;98421;98422;98423;98424;98425;98426;98427;98428;98429;98430;98431;98432;98433;98434;98435;98436;98437;98438;98439;98440;98441;98442;98443	132677;132678;132679;132680;132681;132682;132683;132684;132685;132686;132687;132688;132689;132690;132691;132692;132693;132694;132695;132696;132697;132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711	132708			35	
FLTVMMK	1	Oxidation (M)	884.44998	0.44998183	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	3.88			1					1	8	4	2	2	2	53.645	44.892	2	0.0068119	22491	160513_QHF_FH_JSI12Kac_6	86.866	72.453			0.77503	0.8202	49.564	10	4	Median	0.94194	0.79733	76.42	4	2	Median	0.64521	0.7538	28.846	2	1	Median	0.65089	0.61907	47.534	2	1	Median	0.81363	0.86281	14.908	2	0	Median	1064300000	550900000	513410000	398720000	186160000	212560000	200510000	105470000	95044000	287110000	165100000	122010000	177970000	94178000	83795000	16244	1986	15407	98444;98445;98446;98447;98448;98449;98450;98451;98452;98453	132712;132713;132714;132715;132716;132717;132718;132719;132720;132721	132719		1649;1650	10	
FLTVMMK	1	2 Oxidation (M)	900.4449	0.44489645	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.64							1	5	4	2	3	3	2	37.895	28.398	2	0.0043201	15919	160513_QHF_FH_JSI9Kac_5	75.311	68.4			0.95836	0.97231	10.847	10	0	Median	1.0833	0.92923	1.0206	2	0	Median	0.876	1.0453	5.4951	3	0	Median	1.0167	0.98099	15.627	3	0	Median	0.90531	0.9846	19.812	2	0	Median	211460000	104250000	107210000	68343000	34225000	34119000	48882000	26850000	22032000	53050000	23414000	29636000	41185000	19759000	21426000	16245	1986	15407	98454;98455;98456;98457;98458;98459;98460;98461;98462;98463	132722;132723;132724;132725;132726;132727;132728;132729;132730	132723		1649;1650	9	
FLTWILNR	0	Unmodified	1061.6022	0.60220045	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	84.429	76.183	2	2.6074E-31	43301	160513_QHF_FH_JSI10Kac_6	200.96	143.15			1.0296	1.0319	391.18	8	8	Median	1.5749	1.3419	554.26	2	2	Median	2.4608	2.9084	671.61	2	2	Median	1.7025	1.6171	380.71	2	2	Median	0.61951	0.65614	381.22	2	2	Median	4149800000	1986100000	2163700000	993300000	437440000	555860000	2578100000	1259100000	1318900000	291450000	116720000	174720000	286980000	172810000	114170000	16246	375	15408	98464;98465;98466;98467;98468;98469;98470;98471	132731;132732;132733;132734;132735;132736;132737;132738	132738			8	
FLTYFPGR	0	Unmodified	999.5178	0.51780212	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0				By MS/MS	3	0			2										2	61.695	61.42	2	0.016542	52851	160511_QHF_FH_JSI12i_3	47.849	17.663			0.65541	0.64739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65541	0.64739	NaN	1	1	Median	27722000	15673000	12049000	0	0	0	0	0	0	0	0	0	27722000	15673000	12049000	16247	1187	15409	98472;98473	132739;132740	132740			2	
FLTYHMWPLTFLSPSELAR	0	Unmodified	2308.1714	0.17144578	2424	Q13490	BIRC2	Baculoviral IAP repeat-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.848	90.127	3	0.00012423	52057	160513_QHF_FH_JSI10Kac_6	103.17	86.486			1.0548	1.2554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0548	1.2554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	255020000	140070000	114960000	0	0	0	255020000	140070000	114960000	0	0	0	0	0	0	16248	2424	15410	98474	132741	132741			1	
FLVECFR	0	Unmodified	969.47422	0.47422274	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.996	62.475	2	0.019683	54378	160511_QHF_FH_JSI11i_2	53.163	24.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16249	2531	15411	98475	132742	132742			1	
FLVEYKSAVEK	2	Acetyl (K)	1353.718	0.71801807	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.662	63.966	2	0.0064933	34109	160513_QHF_FH_JSI11Kac_5	67.563	40.448			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1456300	1456300	0	0	0	0	0	0	0	1456300	1456300	0	0	0	0	16250	220	15412	98476	132743	132743	119		1	
FLVFDWNWR	0	Unmodified	1281.6295	0.62947783	4353	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.775	86.383	2	6.2462E-11	46582	160513_QHF_FH_JSI12Kac_6	151.27	131.48			1.1947	1.2063	16.036	4	1	Median	1.721	1.4873	NaN	1	1	Median	0.86065	1.0083	NaN	1	0	Median	1.2329	1.1751	NaN	1	0	Median	1.1577	1.2383	NaN	1	0	Median	501520000	261670000	239850000	116040000	53991000	62046000	238920000	127990000	110930000	50818000	32351000	18466000	95743000	47341000	48402000	16251	4353	15413	98477;98478;98479;98480	132744;132745;132746;132747;132748;132749	132747			6	
FLVFLTGTDR	0	Unmodified	1167.6288	0.62880913	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	83.229	77.299	2	0.0091474	40765	160513_QHF_FH_JSI9Kac_6	68.735	40.336			1.6998	1.8832	59.77	4	3	Median	3.6821	3.1468	NaN	1	1	Median	1.2705	1.4584	NaN	1	0	Median	0.83374	0.81379	NaN	1	1	Median	2.2741	2.4317	NaN	1	1	Median	180730000	82102000	98631000	19028000	6465700	12562000	111120000	56014000	55108000	31489000	16334000	15155000	19096000	3288600	15807000	16252	5332	15414	98481;98482;98483;98484;98485	132750;132751;132752;132753;132754;132755	132751			6	
FLVFVANFDENDPK	1	Unmodified	1653.8039	0.80387296	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	7		3							3	1		2	3	91.269	85.451	2	2.4274E-37	44134	160513_QHF_FH_JSI11Kac_6	186.02	160.55			0.55337	0.61532	33.804	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62275	0.62371	35.154	2	1	Median	0.55337	0.61532	39.402	3	3	Median	150520000	91943000	58582000	0	0	0	0	0	0	60549000	38865000	21685000	89975000	53078000	36897000	16253	1368	15415	98486;98487;98488;98489;98490;98491	132756;132757;132758;132759;132760;132761;132762	132758			7	
FLVGFTNK	1	Unmodified	924.5069	0.50690308	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.21	2	4	7					2	4	5	5	5	4	60.473	56.92	2	2.7946E-06	47684	160511_QHF_FH_JSI10i_3	141.78	72.343			0.91727	0.98143	45.82	19	8	Median	1.0481	0.89641	59.781	5	2	Median	0.85327	1.0241	12.077	5	1	Median	1.0975	1.0608	49.054	5	3	Median	0.85107	0.91855	64.978	4	2	Median	13569000000	7089000000	6480300000	2176100000	1097500000	1078600000	2064500000	1126300000	938230000	4879600000	2323400000	2556200000	4449100000	2541700000	1907300000	16254	1559	15416	98492;98493;98494;98495;98496;98497;98498;98499;98500;98501;98502;98503;98504;98505;98506;98507;98508;98509;98510	132763;132764;132765;132766;132767;132768;132769;132770;132771;132772;132773;132774;132775;132776;132777;132778;132779;132780;132781;132782;132783;132784;132785;132786;132787;132788;132789;132790;132791;132792;132793;132794;132795;132796;132797;132798;132799	132772			37	
FLVHNVK	1	Unmodified	855.49667	0.49667274	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.44		13	18						8	10	9	9	11	25.052	22.727	2;3	0.0016548	17856	160511_QHF_FH_JSI10i_3	88.734	44.123			0.94779	0.9384	111.9	38	29	Median	1.1712	0.94989	113.08	10	8	Median	0.93526	1.11	145.37	9	8	Median	0.7789	0.73804	109.86	8	7	Median	0.55769	0.6168	88.706	11	6	Median	49979000000	20647000000	29332000000	8614900000	2978000000	5636900000	8727100000	3555200000	5171900000	13773000000	5594300000	8179000000	18864000000	8519300000	10344000000	16255	2037	15417	98511;98512;98513;98514;98515;98516;98517;98518;98519;98520;98521;98522;98523;98524;98525;98526;98527;98528;98529;98530;98531;98532;98533;98534;98535;98536;98537;98538;98539;98540;98541;98542;98543;98544;98545;98546;98547;98548;98549	132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812;132813;132814;132815;132816;132817;132818;132819;132820;132821;132822;132823;132824;132825;132826;132827;132828;132829;132830;132831;132832;132833;132834;132835;132836;132837;132838;132839;132840;132841;132842;132843;132844;132845;132846;132847	132813			48	
FLVIALK	1	Unmodified	802.53166	0.53166127	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			77.66	70.318	2	0.031348	38841	160513_QHF_FH_JSI10Kac_6	72.021	49.398			0.29746	0.35781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29746	0.35781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83867000	65500000	18366000	19899000	19899000	0	63968000	45602000	18366000	0	0	0	0	0	0	16256	733;3526	15418	98550;98551	132848;132849	132849			2	
FLVIGNAGTGK	1	Unmodified	1075.6026	0.60259438	1173	P20338	RAB4A	Ras-related protein Rab-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	54.412	49.952	2	0.00010037	42910	160511_QHF_FH_JSI12i_2	87.149	56.537			1.1281	1.2785	51.411	7	4	Median	1.618	1.3676	9.5365	2	1	Median	0.60807	0.72743	91.858	2	2	Median	1.4305	1.4192	39.13	2	1	Median	0.87381	0.9807	NaN	1	0	Median	415330000	210520000	204800000	72757000	29327000	43430000	97747000	60549000	37198000	134880000	58862000	76021000	109940000	61784000	48156000	16257	1173	15419	98552;98553;98554;98555;98556;98557;98558;98559	132850;132851;132852;132853;132854;132855;132856;132857;132858;132859	132851			10	
FLVLDEADGLLSQGYSDFINR	0	Unmodified	2371.1696	0.16959111	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	102.28	102.15	3	5.3366E-29	89954	160511_QHF_FH_JSI11i_2	178.22	169.4			0.72258	0.83211	10.518	3	0	Plateau	0.95289	0.83211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72258	0.7369	NaN	1	0	Median	0.81254	0.90861	NaN	1	0	Median	682970000	399620000	283350000	133230000	66086000	67144000	0	0	0	385480000	234210000	151270000	164260000	99317000	64941000	16258	3828	15420	98560;98561;98562	132860;132861	132861			2	
FLVLNYK	1	Unmodified	895.51674	0.51673948	3567	Q8N8N7	PTGR2	Prostaglandin reductase 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	61.445	60.55	2	0.035694	51958	160511_QHF_FH_JSI12i_2	50.539	29.84			0.8594	0.85128	59.312	3	1	Median	NaN	NaN	NaN	0	0	Median	0.69585	0.85095	NaN	1	0	Median	0.8594	0.85128	NaN	1	0	Median	2.0901	2.3776	NaN	1	1	Median	124370000	65858000	58514000	0	0	0	38948000	23185000	15763000	50420000	27987000	22433000	35003000	14685000	20318000	16259	3567	15421	98563;98564;98565	132862;132863	132862			2	
FLVPDHVNMSELIK	1	Unmodified	1640.8596	0.8596137	22	Q9GZQ8;A6NCE7	MAP1LC3B;MAP1LC3B2	Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	85.614	84.926	3	2.7788E-05	74718	160511_QHF_FH_JSI11i_2	103.85	91.02			0.80715	0.87501	7.6551	4	0	Median	0.99913	0.85878	NaN	1	0	Median	0.7591	0.92932	NaN	1	0	Median	0.85824	0.89155	NaN	1	0	Median	0.72569	0.77701	NaN	1	0	Median	135690000	72790000	62903000	24653000	10380000	14273000	33018000	20255000	12762000	36199000	16014000	20186000	41823000	26141000	15683000	16260	22	15422	98566;98567;98568;98569	132864;132865;132866;132867	132865			2	
FLVPLEQSPVLEQSTLQHNNQTR	0	Unmodified	2677.3824	0.38237785	5264	Q9UBZ4	APEX2	DNA-(apurinic or apyrimidinic site) lyase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	81.205	81.092	3	0.00014033	72478	160511_QHF_FH_JSI11i_3	49.106	41.83			0.979	0.93291	0.32698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97979	0.93076	NaN	1	0	Median	0.97821	0.93507	NaN	1	0	Median	57051000	28543000	28508000	0	0	0	0	0	0	25931000	12164000	13767000	31120000	16380000	14741000	16261	5264	15423	98570;98571	132868;132869;132870	132868			2	
FLVQNIHTLAELK	1	Unmodified	1524.8664	0.86641364	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.68		9	14						7	7	8	8	7	74.431	72.024	2;3	1.2266E-11	64883	160511_QHF_FH_JSI11i_3	202.16	174.42			0.95552	0.94486	67.868	29	22	Median	1.1006	0.93345	95.544	7	4	Median	0.9825	1.1655	46.177	7	6	Median	0.74518	0.76185	63.071	8	6	Median	0.86154	0.92394	68.602	7	6	Median	4241600000	2188600000	2053000000	438420000	176090000	262330000	632440000	291690000	340740000	1265500000	689500000	576040000	1905200000	1031300000	873910000	16262	3723	15424	98572;98573;98574;98575;98576;98577;98578;98579;98580;98581;98582;98583;98584;98585;98586;98587;98588;98589;98590;98591;98592;98593;98594;98595;98596;98597;98598;98599;98600;98601	132871;132872;132873;132874;132875;132876;132877;132878;132879;132880;132881;132882;132883;132884;132885;132886;132887;132888;132889;132890;132891;132892;132893;132894;132895;132896;132897;132898;132899;132900;132901;132902;132903;132904;132905;132906;132907;132908;132909;132910;132911;132912;132913;132914	132874			44	
FLVTLAQK	1	Unmodified	918.55385	0.55385327	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.77	56.425	2	0.0054736	48354	160511_QHF_FH_JSI12i_2	73.616	35.971			0.61852	0.67587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61852	0.67587	NaN	1	1	Median	19061000	12175000	6885400	0	0	0	0	0	0	0	0	0	19061000	12175000	6885400	16263	5468	15425	98602;98603	132915;132916	132915			2	
FLVTVIK	1	Unmodified	818.52658	0.52657589	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.75	6.76		2						1	1	1	2	1		67.308	62.171	2	0.020299	53991	160511_QHF_FH_JSI11i_2	60.788	8.1047			0.75301	0.69819	122.94	4	2	Median	1.762	1.5061	NaN	1	0	Median	0.84495	0.9893	179.74	2	1	Median	0.3218	0.32367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84851000	55814000	29037000	19220000	8048600	11172000	24975000	19066000	5909500	40656000	28700000	11956000	0	0	0	16264	231	15426	98604;98605;98606;98607	132917;132918;132919	132917			3	
FLVVTQK	1	Unmodified	833.50109	0.50108942	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	2	2	1	40.088	37.679	2	0.012322	32165	160511_QHF_FH_JSI11i_2	74.415	14.121			0.90008	1.0045	72.882	6	6	Median	0.75308	0.63986	NaN	1	1	Median	0.63372	0.77716	50.174	2	2	Median	1.4151	1.4091	61.751	2	2	Median	3.2313	3.5878	NaN	1	1	Median	911530000	544620000	366900000	159200000	106470000	52734000	339930000	224010000	115920000	287320000	176580000	110740000	125080000	37574000	87505000	16265	3290	15427	98608;98609;98610;98611;98612;98613	132920;132921;132922;132923;132924;132925	132923			6	
FLVYVANFDEK	1	Unmodified	1343.6762	0.67615325	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.71	2	6	4					6	7	8	5	6	6	81.721	76.394	2	1.9288E-41	39620	160513_QHF_FH_JSI9Kac_6	216.12	167.56			1.0336	1.0103	102.07	23	18	Median	1.1173	0.92323	91.087	8	7	Median	0.48932	0.58148	63.267	5	4	Median	1.2418	1.1856	118.3	6	5	Median	1.9881	2.1575	110.91	4	2	Median	8240500000	4306800000	3933700000	2412300000	1188700000	1223600000	2060900000	1238800000	822150000	2759000000	1521700000	1237300000	1008200000	357610000	650630000	16266	1702	15428	98614;98615;98616;98617;98618;98619;98620;98621;98622;98623;98624;98625;98626;98627;98628;98629;98630;98631;98632;98633;98634;98635;98636;98637;98638	132926;132927;132928;132929;132930;132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944;132945;132946;132947;132948;132949;132950;132951;132952;132953;132954;132955;132956;132957;132958;132959;132960;132961	132957			36	
FLWESYR	0	Unmodified	999.48142	0.48141661	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	60.258	59.325	2	0.014353	50797	160511_QHF_FH_JSI12i_2	66.993	42.07			0.60291	0.61616	10.31	3	3	Plateau	0.72342	0.61616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60291	0.61064	NaN	1	1	Median	0.63839	0.7332	NaN	1	1	Median	844030000	565810000	278230000	208710000	125960000	82752000	0	0	0	328460000	225440000	103020000	306860000	214410000	92451000	16267	2502	15429	98639;98640;98641	132962;132963;132964	132962			3	
FLWGIVTPLATAFGTSSSSATLPLMMK	1	Unmodified	2826.47	0.46999557	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	100.13	91.551	3	5.0538E-116	52182	160513_QHF_FH_JSI11Kac_6	231.37	219.8			1.134	1.1277	29.195	4	1	Median	1.68	1.4301	NaN	1	1	Median	0.64094	0.75547	NaN	1	0	Median	1.3948	1.3112	NaN	1	0	Median	0.92195	0.96996	NaN	1	0	Median	821920000	363830000	458090000	193080000	39297000	153780000	200790000	129350000	71438000	355470000	154640000	200830000	72583000	40544000	32039000	16268	2705	15430	98642;98643;98644;98645;98646	132965;132966;132967;132968;132969;132970;132971	132966			7	
FLWNLILDLIK	1	Unmodified	1386.8275	0.82750894	4556	Q9BZC7	ABCA2	ATP-binding cassette sub-family A member 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101.6	92.408	2	0.024814	53492	160513_QHF_FH_JSI9Kac_6	54.419	28.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26818000	0	26818000	26818000	0	26818000	0	0	0	0	0	0	0	0	0	16269	4556	15431	98647	132972	132972			1	
FLYFSNWLHGDLR	0	Unmodified	1666.8256	0.82561145	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	87.966	79.555	2;3	2.6829E-28	42457	160513_QHF_FH_JSI12Kac_6	175.21	163.07			0.97403	1.0164	35.5	9	2	Median	0.98968	0.84597	33.009	2	1	Median	0.89571	1.0731	14.265	2	0	Median	1.4071	1.3298	3.7618	2	1	Median	0.97403	1.0164	48.016	3	0	Plateau	4211500000	2130500000	2081000000	705230000	391430000	313810000	1822600000	1030300000	792330000	911920000	340330000	571590000	771800000	368520000	403280000	16270	2374	15432	98648;98649;98650;98651;98652;98653;98654;98655;98656	132973;132974;132975;132976;132977;132978;132979;132980;132981;132982;132983;132984;132985;132986	132980			13	
FLYIITK	1	Unmodified	896.53714	0.53714057	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				66.467	65.557	2	0.056861	57626	160511_QHF_FH_JSI9i_2	46.426	29.499			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8357000	8357000	0	8357000	8357000	0	0	0	0	0	0	0	0	0	0	16271	4424	15433	98657	132987	132987			1	
FLYIWPNAR	0	Unmodified	1178.6237	0.62366417	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	4	3	4	3	80.685	77.849	2	7.3449E-06	67039	160511_QHF_FH_JSI10i_3	112.75	90.598			1.0568	1.108	26.499	14	4	Median	1.46	1.2445	22.249	4	2	Median	0.9417	1.1298	26.606	3	1	Plateau	1.0857	1.0573	33.748	4	1	Median	0.89684	0.94816	13.63	3	0	Plateau	1341300000	619650000	721610000	275760000	120820000	154940000	419610000	201320000	218290000	358930000	166220000	192700000	286960000	131280000	155670000	16272	4852	15434	98658;98659;98660;98661;98662;98663;98664;98665;98666;98667;98668;98669;98670;98671	132988;132989;132990;132991;132992;132993;132994;132995;132996;132997;132998;132999;133000;133001;133002;133003;133004;133005;133006;133007	132993			18	
FLYLGDDRNIEEVYVGGK	1	Unmodified	2086.0371	0.037120373	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		4	2							2		2	2	80.571	80.068	3	4.9903E-06	70714	160511_QHF_FH_JSI11i_2	94.384	78.078			1.3066	1.2723	20.624	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3066	1.2723	2.3478	2	0	Median	1.1103	1.174	34.725	2	0	Median	505420000	205180000	300240000	0	0	0	0	0	0	238200000	80540000	157660000	267220000	124640000	142580000	16273	5536	15435	98672;98673;98674;98675;98676;98677	133008;133009;133010;133011;133012;133013;133014;133015;133016;133017;133018	133014			11	
FLYQLHETEK	1	Unmodified	1306.6558	0.65575216	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.04	4.54		14	7						3	5	4	7	8	41.052	39.178	2;3	3.8143E-06	33797	160511_QHF_FH_JSI11i_2	99.568	85.759			1.2872	1.2779	56.038	23	20	Median	1.4709	1.3025	60.482	5	5	Median	0.81717	0.99456	49.59	3	2	Median	0.90509	0.85076	60.298	7	6	Median	1.5123	1.5937	60.596	8	7	Median	2142500000	1085400000	1057100000	346020000	160590000	185420000	272850000	157660000	115200000	872170000	459620000	412550000	651490000	307560000	343920000	16274	552	15436	98678;98679;98680;98681;98682;98683;98684;98685;98686;98687;98688;98689;98690;98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701	133019;133020;133021;133022;133023;133024;133025;133026;133027;133028;133029;133030;133031;133032;133033;133034;133035;133036;133037;133038;133039;133040;133041;133042;133043;133044	133033			26	
FLYSELMK	1	Unmodified	1029.5205	0.52050423	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	66.272	65.374	2	0.0022922	56970	160511_QHF_FH_JSI11i_2	81.191	64.094			0.42835	0.45092	136.84	7	6	Median	0.42835	0.3736	NaN	1	1	Median	0.89935	1.1062	126.91	2	2	Median	0.46377	0.46836	257.75	2	1	Median	0.94304	1.0559	123.32	2	2	Median	1244300000	710450000	533820000	98381000	59446000	38935000	347660000	196210000	151450000	472130000	280120000	192010000	326100000	174670000	151430000	16275	1857	15437	98702;98703;98704;98705;98706;98707;98708	133045;133046;133047;133048;133049;133050;133051	133048			7	
FLYYEMGYK	1	Unmodified	1212.5525	0.55253264	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	2	3	1	69.694	63.448	2	4.2006E-07	33017	160513_QHF_FH_JSI12Kac_6	136.16	105.08			0.98561	0.97836	74.924	7	4	Median	1.1148	0.97836	NaN	1	0	Median	0.93098	1.0979	139.31	2	2	Median	0.98561	0.92499	83.502	3	2	Median	0.98232	1.0326	NaN	1	0	Median	458190000	223900000	234290000	79638000	37969000	41669000	84692000	37068000	47624000	242030000	122380000	119650000	51826000	26483000	25343000	16276	1558	15438	98709;98710;98711;98712;98713;98714;98715	133052;133053;133054;133055;133056;133057;133058;133059;133060;133061	133058			10	
FMADCPHTIGVEFGTR	0	Unmodified	1836.8287	0.82872428	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									1	3	61.127	60.598	3	7.4875E-06	53705	160511_QHF_FH_JSI11i_3	99.055	93.846			1.2521	0.97571	26.32	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0197	0.9731	NaN	1	0	Median	1.1547	1.2247	32.14	2	1	Median	203080000	96055000	107020000	0	0	0	0	0	0	81666000	41201000	40464000	121410000	54853000	66558000	16277	1938	15439	98716;98717;98718;98719	133062;133063;133064;133065;133066;133067	133063			6	
FMADIDLDPGCTLNK	1	Unmodified	1708.78	0.78004275	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.834	78.656	2	1.151E-05	67984	160511_QHF_FH_JSI12i_2	85.958	69.016			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16278	1282	15440	98720	133068	133068			1	
FMAEVGTNR	0	Unmodified	1023.4808	0.48076468	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	27.567	26.732	2	9.7142E-05	23323	160511_QHF_FH_JSI10i_2	93.992	85.651			1.0203	1.2157	54.078	6	4	Median	1.5869	1.3836	83.817	2	2	Median	0.88244	1.093	NaN	1	0	Median	1.1406	1.1418	83.586	2	2	Median	1.1797	1.3523	NaN	1	0	Median	413890000	197410000	216470000	93154000	41135000	52018000	78656000	41104000	37552000	187510000	89437000	98071000	54570000	25737000	28834000	16279	1529	15441	98721;98722;98723;98724;98725;98726	133069;133070;133071;133072;133073;133074;133075;133076	133075			8	
FMATLGPEEEAEK	1	Unmodified	1450.665	0.66499622	5276	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		49.82	49.347	2	4.1009E-05	44407	160511_QHF_FH_JSI10i_1	114.86	100.17			1.8528	2.0049	71.586	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0155	1.2086	NaN	1	0	Median	3.3802	3.3261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55689000	25301000	30387000	0	0	0	43600000	23628000	19973000	12088000	1673600	10415000	0	0	0	16280	5276	15442	98727;98728	133077;133078	133077			2	
FMATNDLMTELQK	1	Unmodified	1540.7266	0.72655062	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	4	4	3	76.533	75.878	2;3	5.2017E-16	66696	160511_QHF_FH_JSI11i_2	180.88	169.73			0.86375	0.91208	42.344	14	5	Median	1.037	0.88474	48.023	3	1	Median	0.77107	0.92584	55.194	4	1	Median	0.7272	0.72652	40.951	4	2	Median	0.90138	1.0253	41.847	3	1	Median	2067400000	1226100000	841280000	359670000	176300000	183360000	605680000	390470000	215210000	604920000	369080000	235840000	497160000	290290000	206870000	16281	3343	15443	98729;98730;98731;98732;98733;98734;98735;98736;98737;98738;98739;98740;98741;98742	133079;133080;133081;133082;133083;133084;133085;133086;133087;133088;133089;133090;133091;133092;133093;133094;133095;133096;133097;133098;133099;133100;133101;133102;133103	133097			25	
FMAVSDVPSLSVGK	1	Unmodified	1435.7381	0.73810158	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	2	1	1	74.711	73.988	2	0.00012124	65261	160511_QHF_FH_JSI9i_2	124.1	88.16			1.3288	1.334	64.15	5	2	Median	2.6222	2.2061	NaN	1	0	Median	0.92987	1.1018	114.54	2	2	Median	1.3288	1.334	NaN	1	0	Median	1.0873	1.2188	NaN	1	0	Median	235080000	111660000	123420000	49891000	15404000	34487000	87486000	48938000	38548000	61270000	28545000	32725000	36430000	18774000	17655000	16282	2993	15444	98743;98744;98745;98746;98747	133104;133105;133106;133107	133105			4	
FMCEVQVEGYNYTGMGNSTNKK	2	Unmodified	2556.1083	0.10832954	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	3	1	59.942	59.414	3	9.0918E-87	51203	160511_QHF_FH_JSI12i_3	251.69	239.61			1.1887	1.231	33.967	6	4	Median	NaN	NaN	NaN	0	0	Median	0.89192	1.0669	18.443	2	1	Median	1.339	1.2468	44.807	3	3	Median	1.5233	1.5475	NaN	1	0	Median	313570000	137660000	175900000	0	0	0	57871000	33578000	24293000	154260000	62742000	91517000	101440000	41344000	60095000	16283	2265	15445	98748;98749;98750;98751;98752;98753	133108;133109;133110;133111;133112;133113;133114;133115	133114			8	
FMCSQLPNQVLK	1	Unmodified	1463.7265	0.72649104	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.407	61.885	2	0.0077684	53856	160511_QHF_FH_JSI11i_2	59.931	44.04			1.0737	1.013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0737	1.013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16151000	10855000	5296000	0	0	0	0	0	0	16151000	10855000	5296000	0	0	0	16284	4664	15446	98754	133116	133116			1	
FMDASALTGIPLPLIK	1	Unmodified	1685.9426	0.94261505	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	102.01	101.91	2;3	1.9496E-15	87794	160511_QHF_FH_JSI12i_2	206.36	196.26			1.1423	1.3249	31.835	9	2	Median	1.2303	1.058	31.809	2	1	Median	1.1109	1.3444	1.4393	2	1	Median	1.3316	1.3582	39.3	3	0	Plateau	1.0587	1.1788	12.759	2	0	Median	1296000000	567870000	728110000	265380000	117460000	147920000	341500000	151900000	189600000	341930000	136500000	205420000	347160000	162000000	185160000	16285	1252	15447	98755;98756;98757;98758;98759;98760;98761;98762;98763	133117;133118;133119;133120;133121;133122;133123;133124;133125;133126;133127	133119			11	
FMDLYPCSASELK	1	Unmodified	1559.7	0.70000151	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.515	70.897	2	5.4469E-07	62125	160511_QHF_FH_JSI11i_2	93.821	75.509			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16286	2338	15448	98764	133128	133128			1	
FMDMFPDASLIR	0	Unmodified	1441.6734	0.67339283	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	96.366	96.06	2	0.016282	82830	160511_QHF_FH_JSI12i_2	61.56	54.707			1.0691	1.0916	3.7396	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91193	1.1086	NaN	1	0	Median	1.0691	1.0916	NaN	1	0	Median	1.0821	1.172	NaN	1	0	Median	128400000	58084000	70318000	0	0	0	36898000	17899000	18999000	58849000	28105000	30743000	32655000	12079000	20576000	16287	3466	15449	98765;98766;98767	133129;133130	133129			0	
FMDQHPEMDFSK	1	Unmodified	1510.6221	0.62208554	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	2	3	3	47.788	46.894	2;3	1.2965E-22	40267	160511_QHF_FH_JSI11i_2	171.62	167.32			0.83344	0.87507	13.577	10	0	Median	1.0253	0.87032	14.593	2	0	Median	0.66903	0.83174	16.849	2	0	Median	1.134	1.146	15.204	3	0	Plateau	0.7896	0.88258	4.6924	3	0	Plateau	5138100000	2534900000	2603200000	852480000	333130000	519350000	1001100000	630560000	370510000	2240900000	1107200000	1133700000	1043700000	464040000	579680000	16288	5497	15450	98768;98769;98770;98771;98772;98773;98774;98775;98776;98777	133131;133132;133133;133134;133135;133136;133137;133138;133139;133140;133141;133142;133143;133144;133145;133146	133140			16	
FMDSVIFTLYNYASNQR	0	Unmodified	2067.9724	0.97241163	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.856	87.449	2;3	1.1109E-96	49269	160513_QHF_FH_JSI9Kac_6	289.89	254.15			1.3958	1.4098	24.669	8	3	Median	1.607	1.3958	6.8181	2	0	Median	0.87264	1.0317	50.202	2	2	Median	1.3657	1.3045	12.381	2	1	Median	1.3958	1.474	7.6943	2	0	Median	1729100000	828510000	900610000	431320000	156940000	274380000	330930000	177380000	153550000	598270000	307820000	290450000	368610000	186380000	182240000	16289	1600	15451	98778;98779;98780;98781;98782;98783;98784;98785	133147;133148;133149;133150;133151;133152;133153;133154;133155;133156;133157;133158	133153			12	
FMDSVIFTLYNYASNQR	0	Oxidation (M)	2083.9673	0.96732625	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				91.157	82.378	3	0.0023415	46099	160513_QHF_FH_JSI9Kac_6	62.709	53.303			1.2138	1.061	NaN	1	1	Median	1.2138	1.061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36768000	12103000	24666000	36768000	12103000	24666000	0	0	0	0	0	0	0	0	0	16290	1600	15451	98786	133159	133159		1271	1	
FMDSVIFTLYNYASNQREEYLLLR	0	Unmodified	2984.4742	0.47422933	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									6	3	1	2		97.429	88.788	3;4	1.72E-64	53192	160513_QHF_FH_JSI10Kac_6	198.98	185.57			1.146	1.0351	69.667	6	4	Median	1.0805	0.91693	101.29	3	2	Median	1.2155	1.453	NaN	1	0	Median	0.92241	0.8771	40.556	2	2	Median	NaN	NaN	NaN	0	0	Median	2936000000	1231400000	1704600000	1636200000	724100000	912080000	675530000	295060000	380470000	624280000	212280000	412000000	0	0	0	16291	1600	15452	98787;98788;98789;98790;98791;98792	133160;133161;133162;133163;133164;133165;133166;133167	133166			8	
FMDSVIFTLYNYASNQREEYLLLR	0	Oxidation (M)	3000.4691	0.46914395	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			95.847	90.126	3	1.8396E-21	52040	160513_QHF_FH_JSI10Kac_6	119.73	103.19			1.0876	1.2844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0876	1.2844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224630000	118680000	105950000	0	0	0	224630000	118680000	105950000	0	0	0	0	0	0	16292	1600	15452	98793	133168;133169	133168		1271	2	
FMEAFFSHVLR	0	Unmodified	1382.6805	0.68052712	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			4						4	2	4		2	84.579	80.463	3	2.2211E-32	42214	160513_QHF_FH_JSI10Kac_6	167.6	158.16			2.8204	2.7751	102.32	8	8	Median	3.7804	3.2218	59.614	2	2	Median	1.2903	1.4823	122.34	4	4	Median	NaN	NaN	NaN	0	0	Median	1.4688	1.5569	127.85	2	2	Median	334890000	142040000	192850000	65436000	12704000	52732000	234760000	111080000	123680000	0	0	0	34695000	18255000	16439000	16293	2654	15453	98794;98795;98796;98797;98798;98799;98800;98801	133170;133171;133172;133173;133174;133175;133176;133177	133176			8	
FMEDMMPK	1	Unmodified	1027.4177	0.41769542	2797	Q96AT9;Q2QD12	RPE;RPEL1	Ribulose-phosphate 3-epimerase;Ribulose-phosphate 3-epimerase-like protein 1	yes	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		51.275	50.49	2	0.01054	43572	160511_QHF_FH_JSI11i_2	63.565	59.209			2.0689	1.913	6.4995	2	2	Median	2.0777	1.827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0602	2.0029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118590000	42241000	76352000	36801000	9271100	27530000	0	0	0	81792000	32970000	48823000	0	0	0	16294	2797	15454	98802;98803	133178;133179	133179			2	
FMEELGEDRFGK	1	Unmodified	1456.6657	0.66566492	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	50.203	49.967	3	0.047015	42736	160511_QHF_FH_JSI12i_3	32.439	20.381			0.47732	0.49226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47732	0.49226	NaN	1	1	Median	146540000	102880000	43659000	0	0	0	0	0	0	0	0	0	146540000	102880000	43659000	16295	2181	15455	98804	133180	133180			1	
FMELLEPLNERK	1	Unmodified	1517.7912	0.79119978	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.56	69.262	3	0.019285	59969	160511_QHF_FH_JSI12i_3	36.77	28.987			0.22582	0.22169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22582	0.22169	NaN	1	1	Median	43539000	34942000	8597200	0	0	0	0	0	0	0	0	0	43539000	34942000	8597200	16296	2162	15456	98805	133181	133181			1	
FMELNLAQK	1	Unmodified	1092.5638	0.56376603	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	59.049	58.221	2	3.2436E-05	49896	160511_QHF_FH_JSI12i_2	101.33	88.739			1.1446	1.1984	63.018	6	4	Median	2.0157	1.7255	NaN	1	1	Median	1.6315	2.0192	81.935	3	3	Median	0.80299	0.83234	NaN	1	0	Median	0.6133	0.68766	NaN	1	0	Median	1293700000	638040000	655660000	120870000	48348000	72523000	475410000	222460000	252950000	415190000	210450000	204730000	282230000	156780000	125450000	16297	1961	15457	98806;98807;98808;98809;98810;98811	133182;133183;133184;133185;133186;133187;133188	133182			7	
FMEPYIFGSR	0	Unmodified	1245.5852	0.58522975	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.971	72.094	2	4.8383E-08	63995	160511_QHF_FH_JSI10i_2	124.98	120.04			0.98188	1.0712	46.961	4	3	Median	2.8776	2.4528	NaN	1	1	Median	0.82992	1.0075	NaN	1	0	Median	1.1616	1.1388	NaN	1	1	Median	0.74858	0.84626	NaN	1	1	Median	447260000	222010000	225250000	80931000	30630000	50301000	121850000	65184000	56662000	152660000	77307000	75350000	91829000	48892000	42937000	16298	5566	15458	98812;98813;98814;98815	133189;133190;133191;133192;133193	133192			5	
FMEQVIFK	1	Unmodified	1040.5365	0.53648865	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							3	1	3	1	64.163	63.341	2	0.00024966	55266	160511_QHF_FH_JSI11i_2	116.37	64.584			1.8799	1.7883	166.34	8	6	Median	2.6342	2.1344	82.215	3	2	Median	0.39466	0.48665	NaN	1	1	Median	4.0486	3.7885	263.07	3	2	Median	1.3417	1.4983	NaN	1	1	Median	2067900000	547770000	1520100000	527610000	159080000	368540000	279580000	145250000	134330000	837030000	139180000	697840000	423640000	104260000	319380000	16299	1939	15459	98816;98817;98818;98819;98820;98821;98822;98823	133194;133195;133196;133197;133198;133199;133200;133201	133199			8	
FMERDPDELR	0	Unmodified	1306.5976	0.59758535	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		28.984	28.519	3	0.020336	24595	160511_QHF_FH_JSI11i_3	33.057	29.835			0.89495	0.95298	53.04	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1306	1.3867	NaN	1	0	Median	0.70844	0.65494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	195830000	101380000	94446000	0	0	0	83035000	39623000	43411000	112790000	61756000	51035000	0	0	0	16300	1076	15460	98824;98825	133202;133203	133202			2	
FMETSAK	1	Unmodified	812.37384	0.37383999	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	12.429	11.857	2	0.0055575	9219	160511_QHF_FH_JSI11i_2	94.407	77.48			0.87231	0.81274	91.497	4	3	Median	0.90142	0.77477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84413	0.85257	NaN	1	0	Median	1.332	1.484	146.44	2	2	Median	772250000	363630000	408620000	96770000	36052000	60718000	0	0	0	301690000	165120000	136570000	373800000	162460000	211340000	16301	1927	15461	98826;98827;98828;98829	133204;133205;133206;133207;133208	133208			5	
FMETVAEK	1	Unmodified	953.45282	0.4528186	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		26.724	26.03	2	0.013264	22472	160511_QHF_FH_JSI9i_2	52.482	35.096			3.9489	3.743	21.232	2	1	Median	4.958	4.3493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.1452	3.2212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126320000	34161000	92156000	31304000	8528900	22775000	0	0	0	95013000	25632000	69381000	0	0	0	16302	981	15462	98830;98831	133209;133210	133209			2	
FMGTELNGK	1	Unmodified	995.47462	0.47461667	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.24	2	4	2					2		2	3	3	2	32.466	30.595	2	5.0895E-05	26803	160511_QHF_FH_JSI10i_2	116.9	88.391			2.0709	2.1927	72.442	9	8	Median	2.0639	1.7127	34.94	2	2	Median	2.1499	2.677	75.322	3	3	Plateau	4.415	4.3979	105.09	2	2	Median	1.464	1.6301	58.051	2	1	Median	2980100000	1257400000	1722800000	640860000	267150000	373710000	713440000	315150000	398280000	997790000	388660000	609130000	628060000	286400000	341660000	16303	309	15463	98832;98833;98834;98835;98836;98837;98838;98839;98840;98841	133211;133212;133213;133214;133215;133216;133217;133218;133219;133220;133221;133222;133223	133223			13	
FMHVLYPR	0	Unmodified	1061.5481	0.54805639	4041	Q96EC8	YIPF6	Protein YIPF6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	52.049	42.433	3	0.0001561	22593	160513_QHF_FH_JSI9Kac_6	104.45	72.033			1.1301	1.0917	40.696	4	2	Median	1.2453	1.0729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3533	1.2787	68.649	2	2	Median	1.0256	1.1109	NaN	1	0	Median	41494000	16800000	24694000	12753000	4996400	7757100	0	0	0	19926000	7349800	12576000	8815000	4453700	4361300	16304	4041	15464	98842;98843;98844;98845	133224;133225;133226;133227;133228	133227			5	
FMINLLK	1	Unmodified	877.50955	0.50954561	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	79.501	78.781	2	0.020039	68400	160511_QHF_FH_JSI12i_3	60.961	40.679			1.0112	1.1881	57.108	5	4	Median	2.6181	2.1903	NaN	1	1	Median	1.0112	1.1881	NaN	1	0	Median	1.0265	0.98994	74.332	2	2	Median	0.62103	0.6671	NaN	1	1	Median	88601000	44147000	44455000	14474000	4252400	10221000	17618000	9537400	8080600	36365000	20655000	15711000	20144000	9702000	10442000	16305	2280	15465	98846;98847;98848;98849;98850	133229;133230;133231;133232;133233	133233			5	
FMIQGGDFSNQNGTGGESIYGEK	1	Unmodified	2435.07	0.069953419	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	69.824	69.059	2;3	4.6468E-21	62667	160511_QHF_FH_JSI10i_1	148.33	124.91			1.2708	1.2084	36.076	4	2	Median	1.2617	1.0806	NaN	1	0	Median	0.53575	0.65351	NaN	1	1	Median	1.28	1.3512	NaN	1	1	Median	1.306	1.4529	NaN	1	0	Median	126980000	73101000	53876000	21052000	8701400	12351000	33902000	29753000	4148600	37927000	17943000	19984000	34096000	16703000	17392000	16306	2276	15466	98851;98852;98853;98854;98855;98856	133234;133235;133236;133237;133238;133239	133235			5	
FMITGGNLQDSK	1	Unmodified	1309.6336	0.63363651	3095	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	52.191	51.203	2	0.0020828	44191	160511_QHF_FH_JSI11i_2	72.2	62.42			0.7374	0.78861	48.81	3	2	Median	1.7606	1.4709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56879	0.56193	NaN	1	1	Median	0.7374	0.78861	NaN	1	0	Median	151040000	70041000	80997000	62727000	17418000	45309000	0	0	0	46851000	26946000	19906000	41459000	25676000	15782000	16307	3095	15467	98857;98858;98859	133240;133241;133242	133242			3	
FMKEATTNAPFR	1	Acetyl (K)	1453.7024	0.70238478	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								2	2		1	2	1	61.023	50.727	2	1.6302E-06	27473	160513_QHF_FH_JSI11Kac_6	104.79	77.053			0.47492	0.45822	57.506	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1491	1.3686	NaN	1	0	Median	0.53169	0.51672	16.99	2	0	Median	NaN	NaN	NaN	0	0	Median	39490000	27814000	11676000	0	0	0	3839100	1720400	2118700	33883000	26093000	7789600	1767800	0	1767800	16308	1363	15468	98860;98861;98862;98863	133243;133244;133245;133246;133247;133248	133243	1296		6	
FMKEATTNAPFR	1	Acetyl (K);Oxidation (M)	1469.6973	0.6972994	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	1	0	1	1			By MS/MS	By MS/MS	14.5	0.5							1	1				1	1	53.617	42.958	2	0.021552	23724	160513_QHF_FH_JSI11Kac_5	43.512	32.022			0.72665	0.73584	67.233	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47113	0.45742	NaN	1	0	Median	1.1207	1.1837	NaN	1	0	Median	7816500	4632700	3183800	0	0	0	0	0	0	6255800	3875500	2380300	1560700	757180	803530	16309	1363	15468	98864;98865	133249	133249	1296		1	
FMKVGYER	1	Acetyl (K)	1070.5219	0.52190122	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.948	38.259	2	0.040958	20859	160513_QHF_FH_JSI11Kac_6	51.346	42.105			0.50509	0.49235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50509	0.49235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14841000	10504000	4336500	0	0	0	0	0	0	14841000	10504000	4336500	0	0	0	16310	660	15469	98866	133250	133250			1	
FMLLFSR	0	Unmodified	912.48914	0.48914452	1972	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									4			2	2	82.751	73.373	2	0.0028305	39018	160513_QHF_FH_JSI12Kac_6	124.89	93.584			0.34561	0.3379	104.39	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96985	0.92238	96.529	2	2	Median	1.4538	1.5491	143.82	2	2	Median	805790000	443280000	362510000	0	0	0	0	0	0	471620000	271700000	199930000	334170000	171590000	162580000	16311	1972	15470	98867;98868;98869;98870	133251;133252;133253;133254	133254			4	
FMLLFSR	0	Oxidation (M)	928.48406	0.48405915	1972	P61966	AP1S1	AP-1 complex subunit sigma-1A	yes	yes	0	0	1	0	By MS/MS			By matching	15.7	0.471								1	2	2			1	77.044	67.532	2	0.0087705	36238	160513_QHF_FH_JSI9Kac_6	81.381	61.535			1.2117	1.0032	6.7611	3	0	Median	1.2501	1.0604	7.8402	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92593	0.99164	NaN	1	0	Median	128070000	70146000	57924000	85614000	50726000	34888000	0	0	0	0	0	0	42455000	19420000	23035000	16312	1972	15470	98871;98872;98873	133255;133256	133255		1634	2	
FMLQDVLDLR	0	Unmodified	1248.6536	0.65364367	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.17	100.99	2	7.5255E-09	86861	160511_QHF_FH_JSI12i_2	182.65	0			0.83694	0.89941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83694	0.89941	NaN	1	1	Median	237600000	133090000	104510000	0	0	0	0	0	0	0	0	0	237600000	133090000	104510000	16313	2217	15471	98874	133257	133257			1	
FMNAVFFLLPK	1	Unmodified	1325.7206	0.72060102	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.63		4	8						15	7	6	7	7	98.671	93.861	2;3	3.4183E-38	87864	160511_QHF_FH_JSI12i_2	207.95	178.79			0.88381	0.98257	105.07	27	15	Median	1.2164	0.98257	135.12	7	4	Median	0.79413	0.93838	123.11	6	3	Median	1.4625	1.3765	91.087	7	4	Median	0.84548	0.86229	76.793	7	4	Median	44883000000	23373000000	21510000000	9561800000	4757200000	4804500000	6574900000	4808200000	1766700000	18547000000	8878500000	9668400000	10200000000	4928800000	5270800000	16314	2094	15472	98875;98876;98877;98878;98879;98880;98881;98882;98883;98884;98885;98886;98887;98888;98889;98890;98891;98892;98893;98894;98895;98896;98897;98898;98899;98900;98901	133258;133259;133260;133261;133262;133263;133264;133265;133266;133267;133268;133269;133270;133271;133272;133273;133274;133275;133276;133277;133278;133279;133280;133281;133282;133283;133284;133285;133286;133287;133288	133261			31	
FMNAVFFLLPK	1	Oxidation (M)	1341.7155	0.71551564	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.38		2	3					1	8	5	3	2	4	94.254	88.283	2;3	2.6079E-21	44078	160513_QHF_FH_JSI12Kac_6	174.85	157.82			1.0064	0.94836	26.126	12	2	Median	1.0934	0.94714	35.443	5	1	Median	0.90753	1.0538	10.067	2	0	Median	1.1291	1.0709	8.6592	2	0	Median	0.72494	0.7435	8.8189	3	1	Median	5136700000	2793000000	2343600000	1179300000	625250000	554020000	1214500000	668410000	546060000	1675800000	876340000	799450000	1067100000	623020000	444110000	16315	2094	15472	98902;98903;98904;98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915	133289;133290;133291;133292;133293;133294;133295;133296;133297;133298;133299;133300;133301;133302;133303;133304;133305;133306;133307;133308	133303		1764	20	
FMNPFNMPNLYQK	1	Oxidation (M)	1658.7585	0.75851945	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.486		8	13							3	4	6	8	79.194	78.521	2;3	1.1768E-05	64310	160511_QHF_FH_JSI12i_3	121.73	113			1.347	1.4069	41.964	19	10	Median	1.602	1.3415	24.008	2	1	Median	1.0936	1.3108	71.44	4	3	Median	1.6462	1.5534	30.18	5	2	Median	1.2695	1.3553	33.007	8	4	Median	665830000	273950000	391880000	29397000	10060000	19338000	78934000	38710000	40224000	196930000	62494000	134440000	360570000	162690000	197880000	16316	1386	15473	98916;98917;98918;98919;98920;98921;98922;98923;98924;98925;98926;98927;98928;98929;98930;98931;98932;98933;98934;98935;98936	133309;133310;133311;133312;133313;133314;133315;133316;133317;133318;133319;133320;133321;133322;133323;133324;133325;133326;133327;133328;133329;133330	133329		1034;1035	21	
FMNPFNMPNLYQK	1	Unmodified	1642.7636	0.76360482	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.63	4.94		8	8						3	5	4	5	5	91.191	89.68	2;3	2.3027E-66	76220	160511_QHF_FH_JSI10i_3	227.25	217.02			1.1408	1.0493	18.78	18	1	Median	1.3371	1.1054	18.193	4	0	Median	0.97775	1.1852	24.545	4	0	Median	0.98406	0.94203	16.828	5	1	Median	1.2048	1.2118	15.348	5	0	Median	5036900000	2380100000	2656900000	712900000	289990000	422910000	906160000	489030000	417130000	1786000000	820790000	965240000	1631800000	780250000	851600000	16317	1386	15473	98937;98938;98939;98940;98941;98942;98943;98944;98945;98946;98947;98948;98949;98950;98951;98952;98953;98954;98955	133331;133332;133333;133334;133335;133336;133337;133338;133339;133340;133341;133342;133343;133344;133345;133346;133347;133348;133349;133350;133351;133352;133353;133354;133355;133356;133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368;133369;133370;133371;133372;133373;133374;133375;133376;133377;133378;133379;133380;133381;133382;133383;133384;133385;133386;133387	133345			57	
FMNPTDQAR	0	Unmodified	1078.4866	0.48657834	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	23.917	23.05	2	2.2076E-05	19156	160511_QHF_FH_JSI12i_2	106.04	92.046			1.0286	0.96463	26.227	4	0	Median	1.04	0.90517	NaN	1	0	Median	0.63896	0.79258	NaN	1	0	Median	1.0172	1.028	NaN	1	0	Median	1.3055	1.4596	NaN	1	0	Median	319290000	162000000	157290000	57980000	26326000	31654000	67065000	30452000	36613000	123450000	61788000	61663000	70797000	43436000	27361000	16318	5543	15474	98956;98957;98958;98959;98960	133388;133389;133390;133391;133392;133393;133394;133395;133396	133388			9	
FMNSHLQK	1	Oxidation (M)	1019.4859	0.48585006	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	0			By MS/MS	By matching	3	0			3									2	1	14.368	14.393	2;3	0.0020885	11648	160511_QHF_FH_JSI11i_3	59.245	33.508			1.6053	1.5352	54.24	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7512	1.6635	11.357	2	1	Median	0.65186	0.65694	NaN	1	0	Median	248400000	97272000	151130000	0	0	0	0	0	0	165990000	64414000	101580000	82414000	32858000	49556000	16319	1271	15475	98961;98962;98963	133397;133398	133397		906	2	
FMNSHLQK	1	Unmodified	1003.4909	0.49093544	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	0.34		2	13							3	4	4	4	14.794	14.497	2;3	0.00021669	11724	160511_QHF_FH_JSI11i_3	119.17	58.386			2.0968	2.1866	87.832	12	10	Median	1.117	0.91663	NaN	1	1	Median	0.70152	0.82125	75.282	3	3	Median	3.1566	3.0247	44.846	4	2	Median	1.1693	1.1925	109.81	4	4	Median	4938200000	2017800000	2920500000	120260000	38202000	82054000	643000000	349320000	293670000	1852600000	683680000	1168900000	2322400000	946550000	1375800000	16320	1271	15475	98964;98965;98966;98967;98968;98969;98970;98971;98972;98973;98974;98975;98976;98977;98978	133399;133400;133401;133402;133403;133404;133405;133406;133407;133408;133409;133410;133411;133412;133413	133400			15	
FMPAGLIAGASLLMVAK	1	Unmodified	1688.9358	0.93575553	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.51		1	9						8	5	4	5	4	100.37	96.575	2;3	4.7638E-33	50519	160513_QHF_FH_JSI11Kac_6	166.03	147.61			1.0102	0.94454	18.839	17	0	Median	1.0494	0.87123	17.022	4	0	Median	0.7765	0.8843	17.265	4	0	Median	1.0102	1.0165	19.496	5	0	Median	1.1079	1.1269	7.9952	4	0	Median	6527600000	3146200000	3381400000	1179800000	514590000	665250000	806560000	403770000	402790000	1885200000	965510000	919650000	2656000000	1262300000	1393700000	16321	5187	15476	98979;98980;98981;98982;98983;98984;98985;98986;98987;98988;98989;98990;98991;98992;98993;98994;98995;98996	133414;133415;133416;133417;133418;133419;133420;133421;133422;133423;133424;133425;133426;133427;133428;133429;133430;133431;133432;133433;133434;133435;133436;133437;133438;133439;133440;133441;133442;133443;133444	133423			30	
FMPAGLIAGASLLMVAK	1	Oxidation (M)	1704.9307	0.93067015	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	94.862	86.881	2;3	4.0715E-08	48581	160513_QHF_FH_JSI11Kac_6	115.83	100.01			0.79925	0.85523	33.937	8	1	Median	1.0486	0.88081	NaN	1	0	Median	0.56521	0.66791	49.67	3	1	Plateau	0.65917	0.6351	0.79263	2	0	Median	0.82571	0.88053	8.2912	2	0	Median	688400000	352800000	335610000	185330000	79426000	105900000	257600000	140590000	117000000	149570000	82013000	67555000	95909000	50766000	45143000	16322	5187	15476	98997;98998;98999;99000;99001;99002;99003;99004	133445;133446;133447;133448;133449;133450;133451;133452;133453;133454;133455	133445		2599;2600	11	
FMPAGLIAGASLLMVAK	1	2 Oxidation (M)	1720.9256	0.92558477	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	2	0	By MS/MS	By matching		By MS/MS	7.33	6.13			2						1	1	1		1	97.75	94.477	3	9.238E-06	81791	160511_QHF_FH_JSI9i_3	89.624	79.702			0.74401	0.74858	47.02	3	1	Median	0.74401	0.58746	NaN	1	0	Median	0.63878	0.74858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3964	1.4566	NaN	1	1	Median	84054000	39378000	44676000	30453000	16382000	14070000	18430000	8946800	9483000	0	0	0	35172000	14049000	21123000	16323	5187	15476	99005;99006;99007	133456;133457	133456		2599;2600	2	
FMPAGLIAGASLLMVAKVGVSMFNRPH	1	Unmodified	2813.4907	0.49068821	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	0	2	By MS/MS				16	0									1	1				100.17	91.012	4	3.8023E-06	52603	160513_QHF_FH_JSI9Kac_6	64.256	52.945			1.5976	1.3872	NaN	1	0	Median	1.5976	1.3872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75470000	30430000	45040000	75470000	30430000	45040000	0	0	0	0	0	0	0	0	0	16324	5187	15477	99008	133458	133458			0	
FMPIPMYDASQALK	1	Unmodified	1610.7837	0.78367156	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		90.953	90.436	2	0.001925	79429	160511_QHF_FH_JSI11i_2	73.781	63.258			2.2067	2.2095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2067	2.2095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73347000	24043000	49303000	0	0	0	0	0	0	73347000	24043000	49303000	0	0	0	16325	3003	15478	99009	133459	133459			1	
FMPYTTYLVEK	1	Unmodified	1390.6843	0.6842751	2885	Q5H8A4	PIGG	GPI ethanolamine phosphate transferase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.478	73.532	2	0.00039526	64494	160511_QHF_FH_JSI11i_2	72.006	62.052			1.0523	1.0874	6.6981	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0457	1.0371	NaN	1	0	Median	1.0589	1.1401	NaN	1	0	Median	76315000	36651000	39663000	0	0	0	0	0	0	44656000	18037000	26619000	31658000	18614000	13044000	16326	2885	15479	99010;99011	133460;133461	133461			2	
FMQASEDLLK	1	Unmodified	1180.5798	0.57981002	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.35	5	8	4				2	3		5	6	7	4	57.138	54.423	2	3.4797E-12	29580	160513_QHF_FH_JSI10Kac_4	155.42	121.62			1.9965	1.9709	124.17	21	20	Linear	0.32504	0.26107	94.839	5	5	Median	0.90515	1.0817	145.8	6	5	Linear	0.369	0.36446	126.05	6	6	Median	0.3588	0.38233	136.81	4	4	Median	26584000000	12570000000	14014000000	4992300000	2450800000	2541500000	5276700000	2819200000	2457500000	10642000000	4768100000	5874400000	5672400000	2532100000	3140300000	16327	1079	15480	99012;99013;99014;99015;99016;99017;99018;99019;99020;99021;99022;99023;99024;99025;99026;99027;99028;99029;99030;99031;99032;99033	133462;133463;133464;133465;133466;133467;133468;133469;133470;133471;133472;133473;133474;133475;133476;133477;133478;133479;133480;133481;133482;133483;133484;133485;133486;133487	133472			26	
FMQASEDLLK	1	Oxidation (M)	1196.5747	0.57472465	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.35	4	4				2	3	3		2	4	5	5	47.207	41.683	2	7.7413E-06	23793	160513_QHF_FH_JSI12Kac_4	106.2	85.574			0.93361	0.96663	15.021	16	2	Median	1.3208	1.1043	4.8758	2	1	Median	0.86623	1.0104	9.3698	4	0	Median	0.98886	0.95918	16.486	5	0	Median	0.86532	0.94537	17.529	5	1	Median	1382600000	678850000	703750000	216970000	83523000	133450000	387000000	204410000	182590000	391200000	201540000	189660000	387430000	189380000	198050000	16328	1079	15480	99034;99035;99036;99037;99038;99039;99040;99041;99042;99043;99044;99045;99046;99047;99048;99049	133488;133489;133490;133491;133492;133493;133494;133495;133496;133497;133498;133499;133500;133501;133502;133503;133504;133505;133506	133503		721	18	
FMQASEDLLKEHYVDLK	2	Acetyl (K);Oxidation (M)	2123.0245	0.024506776	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		76.762	67.437	3	0.00045863	36825	160513_QHF_FH_JSI11Kac_6	75.682	66.024			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15724000	15724000	0	0	0	0	0	0	0	15724000	15724000	0	0	0	0	16329	1079	15481	99050	133507	133507	919;920	721	1	
FMQDASDVMQLLLK	1	Unmodified	1637.8157	0.81569997	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			101.81	101.75	2	2.7318E-14	90288	160511_QHF_FH_JSI10i_2	147.71	123.62			0.99261	1.0109	34.705	2	1	Median	1.5392	1.292	NaN	1	1	Median	0.64012	0.79088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	916630000	513630000	403000000	381090000	146730000	234360000	535540000	366900000	168640000	0	0	0	0	0	0	16330	127	15482	99051;99052	133508;133509	133509			1	
FMQDPMEIFVDDETK	1	Unmodified	1843.8008	0.80083777	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	96.739	96.496	2;3	9.5197E-40	87785	160511_QHF_FH_JSI12i_1	198.74	190.88			1.0382	1.0309	10.679	16	1	Median	1.1135	0.95834	18.805	4	1	Median	0.83366	1.0158	7.5864	4	0	Median	1.066	1.0375	10.421	4	0	Median	1.0237	1.049	4.1413	4	0	Median	1006000000	488430000	517550000	136270000	55479000	80789000	379010000	187020000	191990000	263030000	126310000	136720000	227670000	119620000	108050000	16331	2474	15483	99053;99054;99055;99056;99057;99058;99059;99060;99061;99062;99063;99064;99065;99066;99067;99068	133510;133511;133512;133513;133514;133515;133516;133517;133518;133519;133520;133521;133522;133523;133524;133525;133526;133527;133528;133529;133530;133531;133532;133533;133534;133535;133536;133537;133538;133539;133540;133541;133542;133543;133544;133545;133546;133547;133548;133549;133550;133551	133524			41	
FMQDPMEIFVDDETK	1	Oxidation (M)	1859.7958	0.79575239	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			83.67	83.523	2	0.013367	75836	160511_QHF_FH_JSI10i_1	64.55	48.661			1.1914	1.2676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1914	1.2676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7504400	1920000	5584400	0	0	0	7504400	1920000	5584400	0	0	0	0	0	0	16332	2474	15483	99069	133552	133552		1965	1	
FMQDPMEVFVDDETK	1	Unmodified	1829.7852	0.78518771	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.52	0.499	10	11								5	7	5	4	91.587	91.126	2;3	2.1375E-10	79257	160511_QHF_FH_JSI11i_2	153.38	137.24			1.0473	1.0914	50.382	19	8	Median	1.2849	1.0914	67.938	5	1	Median	0.90785	1.1252	44.676	6	5	Median	1.2294	1.2168	49.849	4	1	Median	1.0665	1.1195	44.375	4	1	Median	596980000	302370000	294610000	97695000	40047000	57648000	252720000	140070000	112650000	149490000	69968000	79522000	97076000	52294000	44782000	16333	97	15484	99070;99071;99072;99073;99074;99075;99076;99077;99078;99079;99080;99081;99082;99083;99084;99085;99086;99087;99088;99089;99090	133553;133554;133555;133556;133557;133558;133559;133560;133561;133562;133563;133564;133565;133566;133567;133568;133569;133570;133571;133572;133573;133574;133575;133576;133577;133578;133579;133580;133581;133582;133583;133584;133585	133579			33	
FMQFSSLEHEGEYYMTPR	0	Unmodified	2250.9714	0.97142535	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.8	5.6		4							1	2	2		1	80.119	77.739	3	1.0277E-11	38528	160513_QHF_FH_JSI9Kac_6	120.92	104.61			1.0833	1.0128	50.069	5	2	Median	1.2058	1.0173	17.303	2	0	Median	1.1877	1.459	90.305	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9112	1.0128	NaN	1	1	Median	140540000	63522000	77020000	47767000	15955000	31812000	72491000	39426000	33065000	0	0	0	20284000	8141300	12142000	16334	3473	15485	99091;99092;99093;99094;99095	133586;133587;133588;133589;133590	133590			5	
FMQTFVLAPEGSVANK	1	Unmodified	1737.876	0.87599205	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.81	8	3	2					6	3	7	6	6	3	77.424	73.05	2;3	9.7362E-23	38309	160513_QHF_FH_JSI11Kac_6	199.96	175.11			1.0712	1.0547	33.855	22	8	Median	1.225	1.0211	35.831	7	3	Median	0.7738	0.92226	16.005	6	2	Median	1.2972	1.2641	35.276	6	2	Median	1.1783	1.2239	30.408	3	1	Median	1876800000	822930000	1053900000	352020000	122110000	229910000	421450000	222560000	198890000	707560000	305840000	401720000	395810000	172410000	223390000	16335	2381	15486	99096;99097;99098;99099;99100;99101;99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115;99116;99117	133591;133592;133593;133594;133595;133596;133597;133598;133599;133600;133601;133602;133603;133604;133605;133606;133607;133608;133609;133610;133611;133612;133613;133614;133615;133616;133617;133618;133619;133620	133602			29	
FMQTFVLAPEGSVANK	1	Oxidation (M)	1753.8709	0.87090667	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	4.09		1						8		2	2	2	3	73.991	64.457	2;3	1.3169E-10	34265	160513_QHF_FH_JSI11Kac_5	122.42	110.56			1.0435	1.1357	14.929	9	1	Median	1.0398	0.87373	0.23894	2	0	Median	0.93569	1.108	12.375	2	0	Median	1.1988	1.1628	6.9454	2	0	Median	1.1094	1.2199	7.6458	3	1	Median	56837000	27130000	29708000	10717000	4100100	6617100	8759800	4388800	4371000	12636000	5920200	6716100	24724000	12721000	12003000	16336	2381	15486	99118;99119;99120;99121;99122;99123;99124;99125;99126	133621;133622;133623;133624;133625;133626;133627;133628;133629;133630;133631;133632	133627		1936	12	
FMQTFVLAPEGSVPNK	1	Unmodified	1763.8916	0.89164211	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	77.117	76.231	2;3	3.4084E-07	67730	160511_QHF_FH_JSI10i_2	147.71	133.8			0.112	0.11944	128.12	6	4	Median	0.21415	0.18204	216.13	2	1	Median	0.05411	0.066106	NaN	1	1	Median	0.083987	0.086233	NaN	1	1	Median	0.31353	0.35049	106.17	2	1	Median	2507700000	2261000000	246660000	813820000	717140000	96674000	688080000	656750000	31328000	492130000	447850000	44281000	513650000	439260000	74382000	16337	5433	15487	99127;99128;99129;99130;99131;99132	133633;133634;133635;133636;133637;133638	133638			6	
FMQVVVSR	0	Unmodified	964.51642	0.51642191	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7.6	6.86		3							2	1	2		2	43.822	40.038	2	0.001364	21920	160513_QHF_FH_JSI10Kac_6	91.853	36.412			0.67497	0.79459	59.68	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67497	0.79459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0345	1.1367	79.176	2	2	Median	182290000	101360000	80930000	0	0	0	88493000	54738000	33755000	0	0	0	93793000	46618000	47175000	16338	907	15488	99133;99134;99135;99136;99137	133639;133640;133641;133642;133643	133642			5	
FMSAYEQR	0	Unmodified	1030.4542	0.45421558	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	24.222	23.179	2	0.00028113	19335	160511_QHF_FH_JSI12i_2	113.7	90.677			1.0137	1.2474	12.537	3	0	Median	1.5869	1.3459	NaN	1	0	Median	1.0137	1.2474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9619	1.0535	NaN	1	0	Median	533940000	253040000	280900000	161600000	52600000	109000000	187980000	114890000	73094000	0	0	0	184370000	85559000	98810000	16339	2672	15489	99138;99139;99140	133644;133645	133644			2	
FMSKVIGANK	2	Acetyl (K)	1135.606	0.6059652	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		53.89	44.162	2	0.012831	23938	160513_QHF_FH_JSI11Kac_6	64.711	36.493			9.9232	9.7824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.9232	9.7824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3833300	484350	3349000	0	0	0	0	0	0	3833300	484350	3349000	0	0	0	16340	5542	15490	99141	133646	133646	3477		1	
FMTDPIR	0	Unmodified	878.43202	0.43202358	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	39.619	38.788	2	0.0071824	34177	160511_QHF_FH_JSI10i_2	89.673	53.086			0.92861	1.1113	18.259	7	1	Median	1.4738	1.2551	NaN	1	0	Median	0.90968	1.1076	0.47605	2	1	Median	1.023	1.0314	18.772	2	0	Median	1.1355	1.3018	31.644	2	0	Median	2109600000	951860000	1157800000	327160000	138210000	188950000	568960000	265000000	303960000	697980000	335900000	362080000	515520000	212750000	302770000	16341	1481	15491	99142;99143;99144;99145;99146;99147;99148	133647;133648;133649;133650;133651;133652;133653;133654;133655;133656	133655			10	
FMTHLILFFR	0	Unmodified	1323.7162	0.71618435	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	1	2	86.945	78.823	2;3	1.3443E-15	43258	160513_QHF_FH_JSI9Kac_6	135.43	122.47			1.1156	1.0737	81.791	7	6	Median	0.66087	0.56131	123.5	2	2	Median	0.5917	0.70457	125.74	2	2	Median	1.1156	1.0737	NaN	1	0	Median	0.73929	0.7818	78.069	2	2	Median	641810000	369030000	272780000	193550000	114070000	79472000	281250000	168090000	113170000	105870000	53823000	52045000	61140000	33047000	28093000	16342	1895	15492	99149;99150;99151;99152;99153;99154;99155;99156	133657;133658;133659;133660;133661;133662;133663;133664;133665	133660			9	
FMTHLILFFR	0	Oxidation (M)	1339.7111	0.71109897	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				82.813	74.187	3	0.0022208	40550	160513_QHF_FH_JSI9Kac_6	53.317	45.592			0.75532	0.64041	NaN	1	0	Median	0.75532	0.64041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40567000	27480000	13086000	40567000	27480000	13086000	0	0	0	0	0	0	0	0	0	16343	1895	15492	99157	133666	133666		1564	1	
FMTILCTR	0	Unmodified	1040.5147	0.51470735	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.17	6.84		2	1						3		2	3	1	62.646	57.832	2	0.0007172	31826	160513_QHF_FH_JSI10Kac_6	95.909	63.439			0.41674	0.40622	68.883	6	6	Median	NaN	NaN	NaN	0	0	Median	0.34274	0.41126	68.592	2	2	Median	0.4959	0.46894	93.404	3	3	Median	0.35022	0.35189	NaN	1	1	Median	650580000	396710000	253860000	0	0	0	208390000	140270000	68122000	280120000	160940000	119180000	162070000	95505000	66566000	16344	891	15493	99158;99159;99160;99161;99162;99163	133667;133668;133669;133670;133671;133672	133672			6	
FMTKIYHPNVDK	2	Acetyl (K)	1533.765	0.76498503	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	58.496	48.696	2;3	0.0005677	26355	160513_QHF_FH_JSI11Kac_6	89.548	75.129			0.63402	0.68097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63402	0.68097	NaN	1	1	Median	22466000	17267000	5198500	0	0	0	0	0	0	4627500	4627500	0	17838000	12640000	5198500	16345	1937	15494	99164;99165	133673;133674	133673	1947		2	
FMTPVIQDNPSGWGPCAVPEQFR	0	Unmodified	2632.2203	0.22026325	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.585	97.389	3	4.3518E-08	86274	160511_QHF_FH_JSI10i_2	75.184	71.843			1.3209	1.4832	29.658	4	1	Linear	2.7532	2.3271	NaN	1	1	Median	1.0024	1.246	NaN	1	0	Median	1.7913	1.761	NaN	1	0	Median	2.0343	2.327	NaN	1	0	Median	135700000	50800000	84900000	10098000	1538500	8559700	48407000	24938000	23469000	41454000	12719000	28735000	35742000	11604000	24137000	16346	282	15495	99166;99167;99168;99169	133675;133676;133677;133678	133678			4	
FMTTAMYDAR	0	Unmodified	1205.5209	0.52091494	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		8							2	2	3	3	2	46.747	44.798	2	6.2644E-05	38352	160511_QHF_FH_JSI12i_2	116.3	104.46			1.2488	1.5036	73.742	9	9	Median	0.88265	0.73739	100.76	2	2	Median	0.8424	1.0431	55.522	2	2	Median	1.6558	1.6588	89.186	3	3	Median	0.96246	1.0667	110.18	2	2	Median	733340000	403160000	330180000	130750000	77792000	52953000	183320000	107610000	75708000	242210000	125610000	116600000	177060000	92141000	84918000	16347	3904	15496	99170;99171;99172;99173;99174;99175;99176;99177;99178;99179	133679;133680;133681;133682;133683;133684;133685;133686;133687;133688	133680			10	
FMVQTIFAPPNTSDMEAVWK	1	Unmodified	2311.1017	0.10171124	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	7.6	6.86		3							2	1	1	1	2	98.917	95.153	3	1.2172E-14	87413	160511_QHF_FH_JSI12i_2	141.86	133.26			0.69019	0.82668	23.244	4	1	Linear	0.76934	0.65888	NaN	1	0	Median	0.70078	0.84376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89172	0.96785	25.187	2	1	Median	675550000	367420000	308130000	55379000	33158000	22221000	156130000	87797000	68337000	209440000	90130000	119310000	254600000	156340000	98259000	16348	5185	15497	99180;99181;99182;99183;99184	133689;133690;133691	133689			3	
FMVWNSIGIIR	0	Oxidation (M)	1350.7118	0.71182725	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	85.178	75.735	2	0.038116	40356	160513_QHF_FH_JSI12Kac_6	38.303	19.523			2.9011	3.0497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9011	3.0497	NaN	1	0	Median	38236000	11472000	26764000	0	0	0	0	0	0	0	0	0	38236000	11472000	26764000	16349	560	15498	99185	133692	133692			1	
FMVWNSIGIIR	0	Unmodified	1334.7169	0.71691263	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.777	82.059	2	8.852E-05	46284	160513_QHF_FH_JSI10Kac_6	94.087	83.258			0.9142	1.0997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9142	1.0997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299220000	175680000	123540000	0	0	0	299220000	175680000	123540000	0	0	0	0	0	0	16350	560	15498	99186	133693;133694	133693			2	
FMYCTPFTLDGR	0	Unmodified	1506.6636	0.66355643	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.218	79.592	2	0.01991	69964	160511_QHF_FH_JSI11i_2	43.77	35.883			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16351	4181	15499	99187	133695	133695			1	
FMYDPQTDQNIK	1	Unmodified	1498.6762	0.67622961	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1				2	3	4	48.518	47.77	2;3	5.5688E-06	43414	160511_QHF_FH_JSI12i_1	122.96	101.99			0.84107	0.8959	45.723	7	7	Median	NaN	NaN	NaN	0	0	Median	0.61213	0.71229	NaN	1	1	Median	1.5325	1.527	55.932	3	3	Median	0.71618	0.75541	22.626	3	3	Plateau	891020000	506990000	384030000	0	0	0	336350000	220980000	115360000	300770000	142180000	158590000	253910000	143830000	110080000	16352	3922	15500	99188;99189;99190;99191;99192;99193;99194;99195;99196	133696;133697;133698;133699;133700;133701;133702;133703;133704	133700			9	
FMYDPQTDQNIK	1	Oxidation (M)	1514.6711	0.67114423	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				49.068	47.846	2	0.001956	42565	160511_QHF_FH_JSI9i_1	86.624	70.734			1.6123	1.2974	NaN	1	1	Median	1.6123	1.2974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20174000	6179500	13994000	20174000	6179500	13994000	0	0	0	0	0	0	0	0	0	16353	3922	15500	99197	133705	133705		2355	1	
FMYGSHYSSPGYVLFYLVR	0	Unmodified	2285.0979	0.097946491	3866	Q92636	NSMAF	Protein FAN	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	16	0									3	1		1	1	91.943	82.745	3	5.5139E-13	46404	160513_QHF_FH_JSI9Kac_6	119.46	110.81			2.2351	1.9413	89.701	3	1	Median	2.2351	1.9413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6813	1.6086	NaN	1	0	Median	7.8385	8.2852	NaN	1	1	Median	799810000	221970000	577830000	278620000	72389000	206230000	0	0	0	248090000	77931000	170160000	273100000	71654000	201450000	16354	3866	15501	99198;99199;99200	133706;133707;133708	133707			3	
FNADEFEDMVAEK	1	Oxidation (M)	1559.645	0.64498906	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									2	1	1	60.15	59.397	2	3.4387E-07	53958	160511_QHF_FH_JSI11i_1	138.24	130.59			1.7918	1.9136	21.876	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.4026	1.6929	10.844	2	1	Median	1.9458	1.8548	NaN	1	0	Median	1.0584	1.1579	NaN	1	0	Median	209120000	78336000	130780000	0	0	0	117360000	34223000	83132000	72539000	33353000	39186000	19222000	10760000	8462200	16355	1292	15502	99201;99202;99203;99204	133709;133710;133711	133709		931	3	
FNADEFEDMVAEK	1	Unmodified	1543.6501	0.65007443	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.68	0.729	9	7	3							6	4	4	5	79.144	78.356	2	6.4035E-22	71134	160511_QHF_FH_JSI12i_1	170.04	153.1			1.022	1.0168	36.702	17	4	Median	1.3358	1.1151	34.952	6	2	Median	0.83758	0.99101	57.964	4	1	Median	0.83406	0.83894	10.896	3	0	Plateau	0.96249	1.0461	18.141	4	1	Median	6010400000	2981000000	3029300000	1243000000	507540000	735420000	908590000	506200000	402390000	2081600000	1025800000	1055800000	1777200000	941450000	835730000	16356	1292	15502	99205;99206;99207;99208;99209;99210;99211;99212;99213;99214;99215;99216;99217;99218;99219;99220;99221;99222;99223	133712;133713;133714;133715;133716;133717;133718;133719;133720;133721;133722;133723;133724;133725;133726;133727;133728;133729;133730;133731;133732;133733;133734;133735;133736;133737;133738;133739;133740;133741;133742;133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754	133726			43	
FNAHGDANTIVCNSK	1	Unmodified	1646.7471	0.74710314	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.45		10	6					4	6	5	7	8	6	29.706	25.558	2;3	7.9697E-15	22044	160511_QHF_FH_JSI9i_2	162.93	147.95			1.0717	1.1018	30.148	25	6	Median	1.1995	1.0415	29.364	5	1	Median	0.98519	1.1833	35.237	6	3	Median	0.93504	0.90415	31.876	8	2	Median	1.1746	1.2995	17.125	6	0	Median	5875100000	2631800000	3243200000	439930000	172290000	267640000	597370000	302450000	294920000	2265800000	1093200000	1172600000	2571900000	1063800000	1508100000	16357	926	15503	99224;99225;99226;99227;99228;99229;99230;99231;99232;99233;99234;99235;99236;99237;99238;99239;99240;99241;99242;99243;99244;99245;99246;99247;99248;99249	133755;133756;133757;133758;133759;133760;133761;133762;133763;133764;133765;133766;133767;133768;133769;133770;133771;133772;133773;133774;133775;133776;133777;133778;133779;133780;133781;133782;133783;133784;133785;133786;133787;133788;133789;133790;133791	133770			37	
FNAIALSAA	0	Unmodified	876.47052	0.47051757	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	66.467	65.899	1;2	0.0041358	58509	160511_QHF_FH_JSI9i_1	57.281	47.531			0.94534	1.0255	25.258	5	0	Median	1.3585	1.0868	NaN	1	0	Median	0.88351	1.0281	NaN	1	0	Median	0.80231	0.77651	39.332	2	0	Median	0.94534	0.9708	NaN	1	0	Median	207830000	104490000	103350000	39918000	16902000	23016000	39949000	20051000	19897000	93731000	52668000	41063000	34235000	14864000	19370000	16358	1076	15504	99250;99251;99252;99253;99254	133792;133793;133794;133795	133795			3	
FNALFAQGNYSEAAK	1	Unmodified	1629.7787	0.77872084	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.6	4	4	5				1	5	4	6	6	5	6	64.279	59.504	2	1.235E-65	51835	160511_QHF_FH_JSI11i_2	234.65	178.29			1.0328	1.1203	24.117	23	4	Median	1.3085	1.124	43.258	6	2	Median	1.0117	1.2141	10.977	6	0	Median	1.0328	1.0239	16.327	5	0	Median	0.94619	1.0176	9.9096	6	2	Median	6427800000	3002500000	3425300000	1172300000	490410000	681930000	1658800000	808330000	850460000	1995100000	889480000	1105700000	1601500000	814260000	787270000	16359	2155	15505	99255;99256;99257;99258;99259;99260;99261;99262;99263;99264;99265;99266;99267;99268;99269;99270;99271;99272;99273;99274;99275;99276;99277	133796;133797;133798;133799;133800;133801;133802;133803;133804;133805;133806;133807;133808;133809;133810;133811;133812;133813;133814;133815;133816;133817;133818;133819;133820;133821;133822;133823;133824;133825;133826;133827;133828;133829;133830;133831;133832;133833;133834;133835;133836;133837;133838;133839;133840;133841;133842;133843;133844;133845;133846	133828			51	
FNALKVPVPEDK	2	Acetyl (K)	1397.7555	0.7554662	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			75.975	65.409	2	0.010533	34750	160513_QHF_FH_JSI10Kac_4	57.019	36.813			0.69029	0.81323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69029	0.81323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3871300	2212100	1659200	0	0	0	3871300	2212100	1659200	0	0	0	0	0	0	16360	589	15506	99278	133847;133848	133848	305		2	
FNASQLITQR	0	Unmodified	1176.6251	0.62512073	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	3	3	2	57.656	53.912	2	1.9983E-19	45014	160511_QHF_FH_JSI10i_3	180.67	151.51			0.92607	0.94041	15.73	12	0	Median	1.2707	1.0798	8.7428	4	0	Median	0.80417	0.92479	16.805	3	0	Median	0.89065	0.83945	13.555	3	0	Plateau	0.73754	0.78297	14.483	2	0	Median	7701600000	4080900000	3620700000	1665600000	752130000	913520000	2632200000	1466000000	1166200000	1889500000	1050300000	839180000	1514200000	812420000	701750000	16361	4296	15507	99279;99280;99281;99282;99283;99284;99285;99286;99287;99288;99289;99290	133849;133850;133851;133852;133853;133854;133855;133856;133857;133858;133859;133860;133861;133862;133863;133864;133865;133866;133867;133868	133854			20	
FNAVCLSR	0	Unmodified	965.47529	0.47528537	139	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		31.078	31.078	2	0.011665	26952	160511_QHF_FH_JSI11i_3	53.968	0			1.1755	1.1096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1755	1.1096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	124060000	69404000	54656000	0	0	0	0	0	0	124060000	69404000	54656000	0	0	0	16362	139	15508	99291	133869	133869			1	
FNAVLCSR	0	Unmodified	965.47529	0.47528537	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	31.774	31.208	2	0.005836	26514	160511_QHF_FH_JSI11i_2	64.42	9.0505			1.1755	1.1096	35.831	5	1	Median	0.79323	0.67122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98101	0.96252	20.113	2	0	Median	1.4063	1.4931	10.602	2	1	Median	575760000	297010000	278750000	50657000	23650000	27008000	0	0	0	306740000	174970000	131760000	218360000	98388000	119980000	16363	1723	15509	99292;99293;99294;99295;99296	133870;133871;133872	133872			3	
FNDEHIPESPYLVPVIAPSDDAR	0	Unmodified	2580.2496	0.24963234	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	85.647	84.989	3	4.3518E-08	75169	160511_QHF_FH_JSI10i_2	75.184	72.261			1.1192	1.208	9.4085	5	1	Median	1.2513	1.0952	14.558	2	1	Median	0.97952	1.208	NaN	1	0	Median	1.1181	1.1377	NaN	1	0	Median	1.1594	1.2505	NaN	1	0	Median	191660000	94170000	97494000	28655000	13045000	15610000	46880000	26124000	20756000	59075000	27144000	31931000	57055000	27858000	29198000	16364	512	15510	99297;99298;99299;99300;99301	133873;133874;133875;133876;133877;133878;133879	133879			7	
FNDEHIPESPYLVPVIAPSDDARR	0	Unmodified	2736.3507	0.35074337	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		77.052	77.052	4	7.3261E-09	68707	160511_QHF_FH_JSI11i_3	75.106	72.224			1.1356	1.0619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1356	1.0619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50196000	21764000	28431000	0	0	0	0	0	0	50196000	21764000	28431000	0	0	0	16365	512	15511	99302	133880;133881	133880			2	
FNDGSDEK	1	Unmodified	910.36684	0.36684036	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.2571	6.1459	2	0.061119	3942	160511_QHF_FH_JSI11i_1	43.808	19.836			0.76132	0.74061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76132	0.74061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74648000	38129000	36518000	0	0	0	0	0	0	74648000	38129000	36518000	0	0	0	16366	1263	15512	99303	133882	133882			1	
FNDIHVPVRLESVK	1	Unmodified	1651.9046	0.90459006	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		56.48	56.48	3;4	0.00082158	50045	160511_QHF_FH_JSI11i_3	64.136	52.522			1.2616	1.1719	4.8849	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2616	1.1719	4.8849	2	1	Median	NaN	NaN	NaN	0	0	Median	263730000	127710000	136010000	0	0	0	0	0	0	263730000	127710000	136010000	0	0	0	16367	2789	15513	99304;99305	133883;133884	133884			2	
FNDILGR	0	Unmodified	833.43955	0.43955179	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		38.556	37.849	2	0.035999	33245	160511_QHF_FH_JSI10i_2	49.358	23.25			0.91881	1.0762	11.018	4	0	Linear	1.0949	0.96586	NaN	1	0	Median	0.75869	0.90867	13.866	2	0	Median	1.0374	1.0667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	441690000	221490000	220200000	101370000	45521000	55853000	155140000	84191000	70945000	185180000	91780000	93404000	0	0	0	16368	2076	15514	99306;99307;99308;99309	133885;133886;133887;133888;133889	133888			5	
FNDPHVK	1	Unmodified	855.4239	0.42390173	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	11.095	10.617	2;3	0.023311	8017	160511_QHF_FH_JSI11i_2	33.55	24.778			1.0746	1.1746	8.6639	6	1	Median	1.3928	1.1824	NaN	1	0	Median	1.1025	1.3231	NaN	1	1	Median	1.0774	1.1081	12.305	2	0	Median	1.0374	1.1479	2.3172	2	0	Median	918720000	419850000	498870000	139300000	56193000	83107000	154660000	79366000	75296000	373790000	157530000	216250000	250970000	126750000	124220000	16369	552	15515	99310;99311;99312;99313;99314;99315	133890;133891;133892;133893;133894;133895	133894			6	
FNDQDIEEIVK	1	Unmodified	1348.6511	0.65106071	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	68.645	68.17	2	2.3679E-06	60572	160511_QHF_FH_JSI9i_1	111.86	95.315			1.0365	1.0591	20.039	4	2	Median	NaN	NaN	NaN	0	0	Median	0.66863	0.78816	NaN	1	0	Median	1.1116	1.0919	NaN	1	0	Median	1.0754	1.1443	15.259	2	2	Median	428080000	233020000	195060000	0	0	0	93638000	61873000	31765000	120430000	58133000	62298000	214010000	113010000	101000000	16370	3839	15516	99316;99317;99318;99319;99320	133896;133897;133898;133899;133900;133901	133901			6	
FNDSEGDDTEETEDYR	0	Unmodified	1920.7133	0.71333921	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.334	27.746	2	3.1851E-65	24636	160511_QHF_FH_JSI10i_1	227.42	227.42			0.91844	0.90689	11.674	4	0	Median	1.3814	1.1044	NaN	1	0	Median	0.71496	0.84132	NaN	1	0	Median	0.98057	0.91482	NaN	1	0	Median	0.86025	0.89903	NaN	1	0	Median	215930000	114520000	101420000	41405000	17265000	24140000	58425000	31650000	26775000	67519000	34144000	33375000	48584000	31458000	17127000	16371	5124	15517	99321;99322;99323;99324	133902;133903;133904;133905;133906;133907;133908;133909	133907			8	
FNDSEGDDTEETEDYRQFR	0	Unmodified	2351.9414	0.94144167	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	41.134	40.653	3	0.02277	36643	160511_QHF_FH_JSI11i_1	32.926	17.836			0.92955	0.94142	5.6371	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99656	0.9797	NaN	1	0	Median	0.86704	0.90463	NaN	1	0	Median	90563000	45054000	45509000	0	0	0	0	0	0	44531000	22769000	21763000	46032000	22286000	23746000	16372	5124	15518	99325;99326	133910	133910			1	
FNDYFEFPR	0	Unmodified	1233.5455	0.54547343	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	72.621	71.728	2	0.011918	62831	160511_QHF_FH_JSI11i_2	57.859	46.369			1.0378	1.1026	10.04	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.73128	0.91108	NaN	1	1	Median	1.0264	1.012	NaN	1	1	Median	1.0378	1.1136	NaN	1	0	Median	103510000	47782000	55727000	0	0	0	30178000	16421000	13757000	47393000	22025000	25368000	25938000	9335800	16602000	16373	3921	15519	99327;99328;99329	133911;133912;133913	133912			3	
FNECGHVLYADIK	1	Unmodified	1564.7344	0.73441319	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	48.546	47.572	2;3	5.4256E-05	41083	160511_QHF_FH_JSI11i_2	124.86	106.55			0.94247	0.99579	30.149	7	1	Median	0.89423	0.77093	NaN	1	0	Median	1.0222	1.2686	34.241	2	1	Median	0.89928	0.90312	3.8543	2	0	Median	1.3694	1.4901	2.1524	2	0	Median	832410000	397240000	435180000	58968000	35927000	23042000	191260000	95325000	95932000	336310000	158740000	177560000	245880000	107240000	138640000	16374	1765	15520	99330;99331;99332;99333;99334;99335;99336	133914;133915;133916;133917;133918;133919;133920;133921;133922;133923;133924;133925	133919			12	
FNEEHIPDSPFVVPVASPSGDAR	0	Unmodified	2466.1816	0.18155278	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	2.98	1	12	4					1		4	4	6	4	79.233	77.785	2;3	5.5698E-10	67510	160511_QHF_FH_JSI12i_2	96.903	92.832			1.0331	1.0871	14.576	16	6	Median	1.3493	1.1135	13.509	4	2	Median	0.8611	1.0545	9.4573	3	0	Median	1.0481	1.0412	18.697	6	3	Median	0.98228	1.1001	9.1164	3	1	Plateau	2472800000	1204900000	1267900000	479210000	219140000	260070000	649830000	337430000	312400000	846850000	409730000	437120000	496880000	238610000	258270000	16375	1192	15521	99337;99338;99339;99340;99341;99342;99343;99344;99345;99346;99347;99348;99349;99350;99351;99352;99353;99354	133926;133927;133928;133929;133930;133931;133932;133933;133934;133935;133936;133937;133938;133939;133940;133941;133942;133943;133944;133945;133946;133947;133948;133949;133950;133951;133952;133953	133930			28	
FNEEHIPDSPFVVPVASPSGDARR	0	Unmodified	2622.2827	0.28266381	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	71.526	70.887	4	3.3507E-06	63299	160511_QHF_FH_JSI10i_2	59.356	56.474			1.1279	1.3326	15.997	3	0	Plateau	1.1279	0.9864	NaN	1	0	Median	1.0911	1.3326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3128	1.26	NaN	1	0	Median	149860000	71297000	78567000	31410000	14403000	17007000	85939000	43104000	42835000	0	0	0	32515000	13790000	18724000	16376	1192	15522	99355;99356;99357	133954;133955;133956;133957;133958	133957			4	
FNEENYGVK	1	Unmodified	1098.4982	0.49818889	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.236	26.68	2	0.00098682	23844	160511_QHF_FH_JSI12i_1	82.279	52.903			1.0398	1.0928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0398	1.0928	NaN	1	1	Median	138530000	74681000	63852000	0	0	0	0	0	0	0	0	0	138530000	74681000	63852000	16377	3801	15523	99358	133959	133959			1	
FNENNRR	0	Unmodified	948.45258	0.4525761	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			4.695	4.2382	2;3	0.0034637	2184	160511_QHF_FH_JSI9i_3	58.167	36.639			0.89249	0.76626	16.243	3	1	Median	1.0109	0.84384	13.638	2	1	Median	0.58063	0.67288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	622620000	298590000	324030000	498570000	222520000	276040000	124060000	76069000	47989000	0	0	0	0	0	0	16378	1130	15524	99359;99360;99361;99362	133960;133961;133962;133963	133962			4	
FNEPGSQYFIFLLSTR	0	Unmodified	1917.9625	0.96249887	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.566	86.166	2	0.0047002	48808	160513_QHF_FH_JSI11Kac_6	78.69	62.934			1.255	1.1815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.255	1.1815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76041000	30495000	45546000	0	0	0	0	0	0	76041000	30495000	45546000	0	0	0	16379	1736	15525	99363	133964	133964			0	
FNEQIEPIYALLR	0	Unmodified	1604.8562	0.85624288	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	99.237	99.093	2	0.00011116	87701	160511_QHF_FH_JSI10i_2	90.653	67.427			0.59932	0.65936	9.0693	3	0	Plateau	0.7463	0.63133	NaN	1	0	Median	0.61717	0.7515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59932	0.65936	NaN	1	0	Median	110860000	64707000	46149000	29248000	14787000	14462000	35850000	21361000	14489000	0	0	0	45757000	28560000	17198000	16380	1314	15526	99364;99365;99366	133965;133966;133967	133967			3	
FNEVAAQYSEDK	1	Unmodified	1399.6256	0.62557424	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	31.657	31.018	2	1.8393E-05	27725	160511_QHF_FH_JSI12i_1	129.84	121.62			0.52279	0.62024	87.376	9	9	Median	0.97127	0.79539	108.91	2	2	Median	0.52279	0.62024	80.397	3	3	Median	0.62446	0.61135	127.93	2	2	Median	1.033	1.0831	125.32	2	2	Median	1668400000	960950000	707430000	265260000	133370000	131890000	475980000	324030000	151950000	484130000	277990000	206130000	443010000	225560000	217450000	16381	5489	15527	99367;99368;99369;99370;99371;99372;99373;99374;99375	133968;133969;133970;133971;133972;133973;133974;133975;133976;133977;133978	133970			11	
FNEWFVSAFVTAGHMR	0	Unmodified	1897.8934	0.89337344	951	P0DI82;P0DI81	TRAPPC2B;TRAPPC2	Trafficking protein particle complex subunit 2B;Trafficking protein particle complex subunit 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		89.322	81.561	3	9.9781E-17	44936	160513_QHF_FH_JSI9Kac_6	135.23	116.3			0.99777	0.86449	95.665	5	3	Median	0.99777	0.86449	NaN	1	0	Median	0.73046	0.86721	157.07	2	1	Median	1.3218	1.2431	101.84	2	2	Median	NaN	NaN	NaN	0	0	Median	503310000	245440000	257870000	84620000	46161000	38459000	291550000	141710000	149830000	127150000	57568000	69578000	0	0	0	16382	951	15528	99376;99377;99378;99379;99380	133979;133980;133981;133982;133983	133981			5	
FNFFALLPHQR	0	Unmodified	1388.7353	0.73533988	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	89.627	81.102	3	1.0592E-11	46644	160513_QHF_FH_JSI10Kac_6	103.87	98.213			1.0617	0.87917	12.843	5	2	Linear	1.1716	0.98578	NaN	1	0	Median	0.77292	0.90683	NaN	1	0	Median	1.0617	1.0036	NaN	1	0	Median	1.0606	1.1523	14.873	2	2	Median	576920000	315850000	261080000	139430000	68255000	71180000	235620000	143250000	92373000	80146000	39407000	40739000	121720000	64936000	56786000	16383	3230	15529	99381;99382;99383;99384;99385	133984;133985;133986;133987;133988;133989;133990;133991	133991			8	
FNFFIHNLAQLR	0	Unmodified	1518.8096	0.80956746	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			83.091	76.742	2;3	1.8698E-09	41221	160513_QHF_FH_JSI9Kac_6	91.123	71.017			0.83295	0.86471	15.304	4	2	Median	0.9737	0.83467	NaN	1	0	Median	0.74616	0.89583	18.085	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	329010000	166190000	162820000	70473000	30430000	40043000	258540000	135760000	122780000	0	0	0	0	0	0	16384	135	15530	99386;99387;99388;99389	133992;133993;133994;133995	133992			4	
FNFFVNK	1	Unmodified	914.46504	0.46503826	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	63.88	63.115	2	0.016664	52937	160511_QHF_FH_JSI10i_3	62.714	53.474			0.95739	0.89465	45.14	5	2	Median	1.4217	1.1303	NaN	1	0	Median	0.78104	0.89465	NaN	1	0	Median	0.5945	0.56871	62.42	2	2	Median	0.99314	1.0234	NaN	1	0	Median	294240000	152470000	141780000	50243000	21277000	28966000	46893000	21394000	25498000	98519000	55221000	43298000	98589000	54575000	44015000	16385	3022	15531	99390;99391;99392;99393;99394	133996;133997;133998;133999;134000;134001;134002	133997			7	
FNFGEEEFK	1	Unmodified	1145.5029	0.50293991	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.92	1	4	2					3		2	3	3	2	63.661	59.467	2	0.00018662	51505	160511_QHF_FH_JSI11i_2	86.136	72.14			0.92388	1.0321	14.239	9	1	Median	1.2137	1.0321	NaN	1	0	Median	0.73765	0.89633	23.859	3	1	Median	1.0684	0.95441	10.849	3	0	Plateau	0.91459	1.0202	1.6443	2	0	Median	1321200000	647700000	673490000	202620000	75782000	126830000	272580000	157080000	115490000	547680000	243960000	303730000	298310000	170880000	127430000	16386	3828	15532	99395;99396;99397;99398;99399;99400;99401;99402;99403;99404	134003;134004;134005;134006;134007;134008;134009;134010;134011	134006			9	
FNFLAPELPAVSEFSTSETMGHSADR	0	Unmodified	2839.3123	0.31230896	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	101.22	101.19	3	4.7028E-14	88954	160511_QHF_FH_JSI9i_2	90.299	83.424			1.4812	1.3863	27.383	2	0	Median	1.3456	1.1422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6305	1.6824	NaN	1	0	Median	479400000	251480000	227910000	165730000	80111000	85615000	0	0	0	0	0	0	313670000	171370000	142300000	16387	1848	15533	99405;99406	134012;134013	134012			1	
FNFLAPELPAVSEFSTSETMGHSADR	0	Oxidation (M)	2855.3072	0.30722358	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	100.84	100.85	3	0.017806	87416	160511_QHF_FH_JSI12i_3	30.702	24.198			0.58236	0.61212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58236	0.61212	NaN	1	0	Median	70337000	37448000	32890000	0	0	0	0	0	0	0	0	0	70337000	37448000	32890000	16388	1848	15533	99407	134014	134014		1531	0	
FNFLNPNDPYHAYYR	0	Unmodified	1929.8798	0.87983187	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.04		7	4						4	3	2	5	5	75.38	71.984	2;3	2.0947E-24	36085	160513_QHF_FH_JSI12Kac_6	155.28	137.36			1.2583	1.182	27.55	11	2	Median	1.526	1.2995	8.6663	2	0	Median	0.80101	0.93743	11.399	2	1	Median	1.4301	1.3484	34.097	4	1	Median	1.0175	1.0834	23.643	3	0	Median	864060000	391540000	472520000	127760000	52492000	75272000	120500000	62404000	58093000	449110000	188370000	260740000	166680000	88271000	78412000	16389	2676	15534	99408;99409;99410;99411;99412;99413;99414;99415;99416;99417;99418;99419;99420;99421;99422	134015;134016;134017;134018;134019;134020;134021;134022;134023;134024;134025;134026;134027;134028;134029;134030;134031;134032;134033	134031			18	
FNFQQTNEDELSFSK	1	Unmodified	1832.8217	0.82170787	2503	Q14155	ARHGEF7	Rho guanine nucleotide exchange factor 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	70.193	69.361	2	1.1516E-11	61101	160511_QHF_FH_JSI9i_2	109.6	87.726			0.88401	0.83315	46.658	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1448	1.099	39.161	2	2	Median	0.5211	0.57347	NaN	1	1	Median	42003000	22010000	19993000	0	0	0	0	0	0	29846000	13660000	16186000	12157000	8349300	3807700	16390	2503	15535	99423;99424;99425;99426	134034;134035;134036;134037	134035			4	
FNFSGSK	1	Unmodified	785.3708	0.37080353	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	25.662	24.904	2	0.0070751	20695	160511_QHF_FH_JSI12i_3	77.058	46.873			1.3456	1.4375	14.336	3	0	Plateau	1.3456	1.1451	NaN	1	0	Median	0.93872	1.1461	NaN	1	0	Median	1.4358	1.4685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	500560000	263460000	237090000	145390000	75328000	70065000	161410000	86209000	75202000	193750000	101930000	91826000	0	0	0	16391	2286	15536	99427;99428;99429;99430	134038;134039	134039			2	
FNGGGHINHSIFWTNLSPNGGGEPK	1	Unmodified	2636.252	0.25203238	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	71.594	63.05	3;4	1.6468E-52	34360	160513_QHF_FH_JSI10Kac_6	179.5	159.3			0.93374	1.1097	12.815	5	0	Median	1.3268	1.1427	NaN	1	0	Median	0.85325	1.01	13.314	2	0	Median	1.2842	1.2367	NaN	1	0	Median	0.88437	0.94202	NaN	1	0	Median	257430000	131570000	125860000	38918000	17763000	21155000	151380000	78862000	72521000	27135000	11641000	15495000	39991000	23307000	16685000	16392	807	15537	99431;99432;99433;99434;99435	134040;134041;134042;134043;134044;134045;134046;134047;134048;134049;134050	134050			11	
FNGSHVVGSPFK	1	Unmodified	1274.6408	0.6407708	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	37.525	36.814	2;3	1.9486E-06	31300	160511_QHF_FH_JSI12i_3	121.02	101.75			1.2365	0.99933	46.455	9	4	Median	1.2958	1.0439	6.1721	2	0	Median	0.79038	0.91551	3.5861	2	0	Median	2.1935	2.0821	11.988	2	2	Median	0.91754	0.9273	51.577	3	2	Median	2007700000	947020000	1060700000	299950000	118560000	181390000	340760000	185530000	155230000	489960000	199170000	290790000	877010000	443750000	433260000	16393	512	15538	99436;99437;99438;99439;99440;99441;99442;99443;99444	134051;134052;134053;134054;134055;134056;134057;134058;134059;134060;134061;134062	134062			12	
FNGTHIPGSPFK	1	Unmodified	1300.6564	0.65642086	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.44		5	9						2	4	4	4	4	48.883	46.822	2;3	2.9283E-05	39734	160511_QHF_FH_JSI12i_3	130.01	116.41			0.86867	0.91339	30.957	16	2	Median	1.2727	1.0323	9.9628	4	0	Median	0.77422	0.93001	47.123	4	1	Median	0.88459	0.83053	37.157	4	0	Median	0.8417	0.86913	12.863	4	1	Median	9211800000	4384300000	4827600000	1608600000	644440000	964140000	1708700000	959730000	748940000	2750900000	1233400000	1517600000	3143700000	1546700000	1596900000	16394	1192	15539	99445;99446;99447;99448;99449;99450;99451;99452;99453;99454;99455;99456;99457;99458;99459;99460	134063;134064;134065;134066;134067;134068;134069;134070;134071;134072;134073;134074;134075;134076;134077;134078;134079;134080;134081;134082;134083;134084;134085;134086;134087;134088;134089;134090;134091;134092;134093;134094	134093			32	
FNHLVPR	0	Unmodified	881.48717	0.48717069	1653	P49356	FNTB	Protein farnesyltransferase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	18.6	17.837	3	0.01684	14753	160511_QHF_FH_JSI10i_3	38.792	21.828			1.052	0.77395	25.255	3	0	Plateau	1.1337	0.91936	NaN	1	0	Median	1.052	1.2452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80998	0.75418	NaN	1	0	Median	73325000	33878000	39447000	26007000	8278100	17729000	15499000	8696000	6803200	0	0	0	31819000	16904000	14915000	16395	1653	15540	99461;99462;99463	134095;134096	134095			2	
FNHVSFWVVR	0	Unmodified	1289.6669	0.66692597	3368	Q86X27	RALGPS2	Ras-specific guanine nucleotide-releasing factor RalGPS2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	72.07	63.23	3	1.7504E-06	34424	160513_QHF_FH_JSI10Kac_6	87.568	77.725			1.2222	1.3431	16.524	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87464	1.0222	NaN	1	0	Median	1.4063	1.3768	NaN	1	0	Median	1.2222	1.3431	NaN	1	0	Median	104890000	53592000	51294000	0	0	0	80294000	45928000	34366000	13940000	3232200	10707000	10653000	4432000	6220800	16396	3368	15541	99464;99465;99466	134097;134098;134099	134098			2	
FNHWELK	1	Unmodified	972.48175	0.48175096	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		9	8							3	1	5	8	33.349	32.779	3	0.0012338	29491	160511_QHF_FH_JSI12i_2	91.041	74.838			0.79009	0.79672	60.896	11	0	Median	1.3524	1.1515	57.474	2	0	Median	0.77526	0.92948	NaN	1	0	Median	2.1439	2.0878	84.045	4	0	Linear	0.72613	0.80459	58.889	4	0	Median	1020000000	468250000	551720000	136510000	61698000	74815000	151720000	70620000	81105000	440420000	213290000	227120000	291310000	122640000	168670000	16397	878	15542	99467;99468;99469;99470;99471;99472;99473;99474;99475;99476;99477;99478;99479;99480;99481;99482;99483	134100;134101;134102;134103;134104;134105;134106;134107;134108;134109;134110;134111;134112;134113;134114;134115;134116;134117;134118;134119;134120;134121;134122;134123;134124;134125	134106			26	
FNIALGQYMGALQSIVPLFIYMNK	1	Unmodified	2730.4277	0.42773683	3380	Q86Y37	CACUL1	CDK2-associated and cullin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	2	1		1	102.62	94.232	2;3	1.4544E-149	54070	160513_QHF_FH_JSI9Kac_6	268.56	243.25			1.0212	1.0016	15.762	4	0	Median	1.0475	0.8899	5.7872	2	0	Median	1.0064	1.2157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.0822	NaN	1	0	Median	556960000	271260000	285690000	248150000	104680000	143470000	275260000	148010000	127250000	0	0	0	33545000	18573000	14972000	16398	3380	15543	99484;99485;99486;99487	134126;134127;134128;134129	134128			4	
FNIDEVLQEWEAEHGK	1	Unmodified	1942.9061	0.9061062	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.06	101.06	3	8.1672E-11	90052	160511_QHF_FH_JSI11i_3	121.27	111.98			1.1653	1.1064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1653	1.1064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107360000	57228000	50135000	0	0	0	0	0	0	107360000	57228000	50135000	0	0	0	16399	5371	15544	99488	134130	134130			1	
FNIDGNNERPSPPPNVDYPLDGEK	1	Unmodified	2683.2514	0.25142326	5143	Q9NZ32	ACTR10	Actin-related protein 10	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0.816	1	1	1								2		1	66.125	65.812	3	0.0048205	58324	160511_QHF_FH_JSI10i_2	38.933	27.944			0.44817	0.50509	178.91	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5083	1.7897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13317	0.14255	NaN	1	1	Median	62277000	41520000	20758000	0	0	0	43127000	24411000	18716000	0	0	0	19150000	17108000	2042000	16400	5143	15545	99489;99490;99491	134131;134132;134133	134132			3	
FNIDLVSK	1	Unmodified	934.51238	0.51238239	1276;1243	P24386;P26374	CHM;CHML	Rab proteins geranylgeranyltransferase component A 1;Rab proteins geranylgeranyltransferase component A 2	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	62.611	61.718	2	0.027247	53596	160511_QHF_FH_JSI11i_2	42.287	16.55			0.92256	1.0607	8.3512	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.92511	1.1293	NaN	1	0	Median	0.92256	0.95715	NaN	1	0	Median	0.98882	1.0607	NaN	1	1	Median	99687000	50547000	49140000	0	0	0	23381000	11556000	11825000	36000000	19304000	16696000	40306000	19687000	20618000	16401	1243;1276	15546	99492;99493;99494	134134;134135;134136	134135			3	
FNIIASLYDYNPNLATYMKPEMWGK	2	Unmodified	2978.4347	0.4346727	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.717	88.653	3;4	1.0717E-37	52653	160513_QHF_FH_JSI10Kac_6	209.3	190.6			0.68553	0.82829	35.537	3	3	Plateau	1.8718	1.605	NaN	1	1	Median	0.68553	0.82829	NaN	1	1	Median	0.95946	0.92066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	450380000	286580000	163800000	53878000	12838000	41040000	272800000	194460000	78343000	123700000	79283000	44421000	0	0	0	16402	40	15547	99495;99496;99497	134137;134138;134139	134139			3	
FNIKLWK	2	Acetyl (K)	989.56984	0.56983769	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	81.242	71.864	2	0.035245	39564	160513_QHF_FH_JSI11Kac_6	67.032	45.732			0.5582	0.58226	42.943	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42784	0.42978	NaN	1	0	Median	0.7283	0.78885	NaN	1	0	Median	60048000	41309000	18739000	0	0	0	0	0	0	35817000	25177000	10640000	24231000	16132000	8098900	16403	1981	15548	99498;99499	134140	134140			1	
FNILGTHTK	1	Unmodified	1029.5607	0.56072956	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	37.925	36.913	2;3	0.0014273	31173	160511_QHF_FH_JSI12i_3	63.076	39.756			4.9166	4.791	15.106	6	6	Median	5.6039	4.4651	0.25392	2	2	Median	4.483	5.1966	1.7809	2	2	Median	3.7129	3.6057	NaN	1	1	Median	5.3629	5.3801	NaN	1	1	Median	2939800000	502300000	2437500000	651950000	109810000	542140000	792290000	135230000	657060000	503920000	83147000	420770000	991660000	174110000	817550000	16404	1528	15549	99500;99501;99502;99503;99504;99505	134141;134142;134143;134144;134145;134146	134146			6	
FNILGTNTK	1	Unmodified	1006.5447	0.54474515	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.4	50.004	2	0.0010581	42814	160511_QHF_FH_JSI12i_2	74.464	39.169			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16405	1500	15550	99506	134147	134147			1	
FNILILYSTTR	0	Unmodified	1339.75	0.7499869	5379	Q9UKT5	FBXO4	F-box only protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	88.988	79.597	2	0.0036885	44476	160513_QHF_FH_JSI11Kac_6	83	57.061			1.2207	1.2477	9.7424	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1644	1.1646	NaN	1	1	Median	1.2798	1.3367	NaN	1	1	Median	69579000	26905000	42674000	0	0	0	0	0	0	35042000	14882000	20160000	34537000	12023000	22514000	16406	5379	15551	99507;99508	134148;134149	134148			2	
FNILLTTYEILLK	1	Unmodified	1579.9225	0.92253153	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.661	91.227	2	3.3118E-14	52171	160513_QHF_FH_JSI9Kac_6	133.07	116.84			0.96393	1.4971	58.247	4	1	Linear	1.7103	1.4597	NaN	1	0	Median	0.50316	0.59231	NaN	1	1	Median	1.7559	1.7134	NaN	1	0	Median	0.54327	0.56909	NaN	1	0	Median	334950000	171210000	163730000	90190000	33027000	57163000	102680000	75541000	27139000	93397000	31939000	61458000	48678000	30704000	17974000	16407	183	15552	99509;99510;99511;99512	134150;134151;134152;134153	134151			4	
FNIPDLK	1	Unmodified	845.4647	0.46470391	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	64.516	63.705	2	0.010374	55460	160511_QHF_FH_JSI11i_2	79.116	37.614			1.0316	1.0214	11.007	5	0	Median	1.0966	0.92698	NaN	1	0	Median	0.70315	0.87172	NaN	1	0	Median	1.0799	1.0588	5.0966	2	0	Median	1.0141	1.1295	NaN	1	0	Median	317380000	161850000	155530000	49657000	23097000	26560000	59852000	34538000	25314000	118320000	57513000	60806000	89555000	46701000	42854000	16408	1190	15553	99513;99514;99515;99516;99517	134154;134155;134156;134157;134158;134159;134160	134160			7	
FNISNGGPAPEAITDK	1	Unmodified	1629.7999	0.79985021	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	5.26	5	4	1				3			3	3	3	4	58.698	56.951	2;3	2.7968E-30	49447	160511_QHF_FH_JSI11i_2	231.06	213.63			0.87947	0.98565	19.361	10	2	Median	1.2243	1.0247	5.0607	2	0	Median	0.75561	0.90919	13.749	2	0	Median	0.88634	0.86026	26.542	3	1	Median	1.0058	1.0775	22.014	3	1	Plateau	3036500000	1546400000	1490100000	637580000	325880000	311690000	765780000	448410000	317370000	884860000	426280000	458580000	748250000	345820000	402430000	16409	1460	15554	99518;99519;99520;99521;99522;99523;99524;99525;99526;99527;99528;99529;99530	134161;134162;134163;134164;134165;134166;134167;134168;134169;134170;134171;134172;134173;134174;134175;134176;134177;134178;134179;134180;134181;134182;134183	134179			23	
FNISSHNQSPK	1	Unmodified	1257.6102	0.61019895	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	17.418	16.872	2;3	8.0473E-05	13465	160511_QHF_FH_JSI12i_3	68.515	53.082			1.0538	1.15	33.654	4	1	Median	1.5035	1.2339	NaN	1	0	Median	0.98294	1.15	NaN	1	0	Median	0.63682	0.60258	NaN	1	1	Median	1.1298	1.1501	NaN	1	0	Median	259860000	140970000	118880000	27493000	10666000	16826000	43467000	24177000	19290000	80109000	42949000	37160000	108790000	63180000	45607000	16410	4653	15555	99531;99532;99533;99534;99535;99536;99537	134184;134185;134186;134187;134188;134189;134190	134188			7	
FNKIVHSSMTR	1	Acetyl (K)	1360.6922	0.69215444	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	40.05	30.875	2;3	0.00055252	16992	160513_QHF_FH_JSI11Kac_6	72.846	63.414			0.85431	0.99631	183	7	4	Median	0.34441	0.28965	257	2	2	Median	0.88508	1.0569	8.3541	2	0	Median	0.85431	0.80463	NaN	1	0	Median	0.36053	0.39802	338.52	2	2	Median	110910000	55758000	55152000	15296000	7445000	7851400	50917000	25115000	25802000	33867000	19818000	14049000	10830000	3380400	7449400	16411	4114	15556	99538;99539;99540;99541;99542;99543;99544;99545;99546	134191;134192;134193;134194;134195;134196;134197;134198;134199;134200;134201	134191	3044		11	
FNKIVHSSMTR	1	Acetyl (K);Oxidation (M)	1376.6871	0.68706906	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	1	0	1	1				By MS/MS	16	0									1				1	29.404	20.876	3	0.019904	11261	160513_QHF_FH_JSI12Kac_6	39.424	16.198			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3593800	3593800	0	0	0	0	0	0	0	0	0	0	3593800	3593800	0	16412	4114	15556	99547	134202	134202	3044	2393	1	
FNLLREENEGYAK	1	Unmodified	1581.7787	0.77872084	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.17	47.17	3	0.014822	41689	160511_QHF_FH_JSI11i_3	45.347	26.934			0.97642	0.91043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97642	0.91043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94942000	51069000	43872000	0	0	0	0	0	0	94942000	51069000	43872000	0	0	0	16413	3675	15557	99548	134203	134203			1	
FNLMAIVSDRK	1	Unmodified	1292.6911	0.69109181	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	1	By MS/MS		By MS/MS		8.2	6.37			3						2	3		2		77.817	72.977	3	0.00070477	38060	160513_QHF_FH_JSI9Kac_6	63.091	50.135			0.95126	0.87495	41.712	4	2	Linear	1.6138	1.3856	60.193	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5747	1.4791	39.419	2	1	Median	NaN	NaN	NaN	0	0	Median	121850000	52757000	69089000	61872000	28281000	33591000	0	0	0	59975000	24476000	35498000	0	0	0	16414	5663	15558	99549;99550;99551;99552;99553	134204;134205;134206;134207;134208	134208			5	
FNLMQVGR	0	Unmodified	963.49602	0.49602082	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	58.02	57.189	2	0.0022782	47964	160511_QHF_FH_JSI10i_3	81.297	60.143			0.83557	0.85225	14.208	4	2	Median	1.3584	1.0805	NaN	1	0	Median	0.72816	0.83877	NaN	1	0	Median	0.92208	0.86594	NaN	1	1	Median	0.75718	0.77569	NaN	1	1	Median	196520000	102800000	93720000	51898000	26673000	25225000	52325000	28101000	24224000	45795000	25089000	20706000	46504000	22939000	23565000	16415	2591	15559	99554;99555;99556;99557	134209;134210;134211;134212	134210			4	
FNLTGLNEQVPHYR	0	Unmodified	1686.8478	0.84780346	2068	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							3	4	3	3	65.047	64.244	2;3	4.0786E-41	55378	160511_QHF_FH_JSI12i_3	208.68	167.45			0.8894	0.90922	16.839	13	0	Median	1.0709	0.90922	38.205	3	0	Median	0.72217	0.97385	9.5428	4	0	Linear	0.95939	0.92722	2.7906	3	0	Median	0.86292	0.90684	4.5167	3	0	Median	3037200000	1495000000	1542200000	449130000	205210000	243910000	816980000	403350000	413630000	863190000	378530000	484660000	907940000	507920000	400020000	16416	2068	15560	99558;99559;99560;99561;99562;99563;99564;99565;99566;99567;99568;99569;99570	134213;134214;134215;134216;134217;134218;134219;134220;134221;134222;134223;134224;134225;134226;134227;134228;134229;134230	134228			18	
FNLTYVSHDGDDK	1	Unmodified	1509.6736	0.67358707	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.57	4	16	4					6	8	11	8	10	9	47.81	44.116	2;3	1.3327E-31	38429	160511_QHF_FH_JSI9i_2	171.05	152.27			0.99563	1.0329	25.864	31	7	Median	1.1625	1.0002	27.121	7	1	Median	0.85026	1.026	11.421	6	2	Median	1.2047	1.1092	36.184	9	3	Median	0.97884	1.0329	21.271	9	1	Median	4340100000	2095100000	2245100000	680820000	304030000	376800000	799390000	455680000	343720000	1752400000	821310000	931050000	1107600000	514050000	593500000	16417	1282	15561	99571;99572;99573;99574;99575;99576;99577;99578;99579;99580;99581;99582;99583;99584;99585;99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596;99597;99598;99599;99600;99601;99602;99603;99604;99605;99606;99607;99608	134231;134232;134233;134234;134235;134236;134237;134238;134239;134240;134241;134242;134243;134244;134245;134246;134247;134248;134249;134250;134251;134252;134253;134254;134255;134256;134257;134258;134259;134260;134261;134262;134263;134264;134265;134266;134267;134268;134269;134270;134271;134272;134273;134274;134275;134276;134277;134278;134279;134280;134281;134282;134283;134284;134285;134286;134287;134288;134289;134290	134259			60	
FNLTYVSHDGDDKK	2	Unmodified	1637.7686	0.76855009	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	36.382	36.309	3	0.00025279	30802	160511_QHF_FH_JSI12i_3	79.346	69.275			1.597	1.5598	61.741	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0713	1.008	NaN	1	1	Median	2.3809	2.4136	NaN	1	1	Median	198670000	71041000	127630000	0	0	0	0	0	0	58047000	26847000	31200000	140620000	44194000	96427000	16418	1282	15562	99609;99610	134291;134292	134292			2	
FNLTYVSHDGDDKK	2	Acetyl (K)	1679.7791	0.77911477	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.896	47.17	3	0.000759	25519	160513_QHF_FH_JSI11Kac_6	75.316	56.143			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8924700	8924700	0	0	0	0	0	0	0	8924700	8924700	0	0	0	0	16419	1282	15562	99611	134293	134293	1198		1	
FNNPFYFSFSR	0	Unmodified	1424.6513	0.65133548	4172	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	86.596	77.154	2	0.026235	41227	160513_QHF_FH_JSI12Kac_6	53.597	40.981			0.83821	0.87545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83821	0.87545	NaN	1	1	Median	33981000	18246000	15734000	0	0	0	0	0	0	0	0	0	33981000	18246000	15734000	16420	4172	15563	99612	134294	134294			1	
FNNYVDCMK	1	Unmodified	1189.4896	0.48961481	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									2	1	1	38.376	37.779	2	0.00018053	32421	160511_QHF_FH_JSI11i_2	86.67	75.96			0.84803	0.93597	28.01	4	2	Median	NaN	NaN	NaN	0	0	Median	0.66417	0.79585	44.177	2	1	Median	1.0042	1.0174	NaN	1	0	Median	0.80767	0.8611	NaN	1	1	Median	250330000	146100000	104240000	0	0	0	117920000	75352000	42570000	89348000	46854000	42493000	43063000	23891000	19172000	16421	2094	15564	99613;99614;99615;99616	134295;134296;134297;134298	134297			4	
FNNYVDCMKK	2	Unmodified	1317.5846	0.58457783	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	30.599	30.556	3	0.0042903	25694	160511_QHF_FH_JSI12i_3	49.5	24.027			0.66608	0.67045	138.5	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14255	0.13458	NaN	1	1	Median	1.1796	1.1926	81.446	2	1	Median	111820000	66644000	45179000	0	0	0	0	0	0	25662000	22197000	3464900	86162000	44447000	41714000	16422	2094	15565	99617;99618;99619	134299;134300;134301	134301			3	
FNPDFAEAHYLSYLNNLR	0	Unmodified	2183.0436	0.043602734	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	96.694	96.638	3	2.6695E-07	83609	160511_QHF_FH_JSI12i_3	100.53	86.053			1.0109	1.0495	15.895	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68063	0.84119	NaN	1	0	Median	1.2571	1.145	NaN	1	0	Median	1.0109	1.0495	NaN	1	0	Median	101910000	53642000	48263000	0	0	0	9747900	5282200	4465700	32726000	14672000	18054000	59432000	33688000	25744000	16423	5352	15566	99620;99621;99622;99623	134302;134303;134304;134305;134306	134306			5	
FNPDIFSPGVR	0	Unmodified	1247.6299	0.62987176	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.874	68.983	2	1.7897E-05	60394	160511_QHF_FH_JSI11i_2	104.2	87.421			0.82082	0.87877	6.1611	4	0	Median	1.0533	0.90475	NaN	1	0	Median	0.65023	0.78973	NaN	1	0	Median	0.84168	0.86325	NaN	1	0	Median	0.80048	0.89456	NaN	1	0	Median	492820000	263650000	229160000	96711000	49448000	47263000	115730000	64152000	51577000	160890000	87841000	73046000	119490000	62213000	57277000	16424	485	15567	99624;99625;99626;99627	134307;134308;134309;134310;134311;134312;134313;134314	134312			8	
FNPETDYLTGTDGK	1	Unmodified	1556.6995	0.69946747	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.773	54.113	2	8.9179E-05	48245	160511_QHF_FH_JSI9i_1	113.24	103.81			0.97615	0.99855	5.5287	4	0	Median	1.2203	0.99684	NaN	1	0	Median	0.93362	1.096	NaN	1	0	Median	1.0206	1.0003	NaN	1	0	Median	0.9158	0.96318	NaN	1	0	Median	597750000	279900000	317850000	130120000	52600000	77523000	135110000	77760000	57347000	187350000	77173000	110180000	145160000	72370000	72794000	16425	4315	15568	99628;99629;99630;99631	134315;134316;134317;134318;134319;134320;134321;134322;134323;134324	134324			10	
FNPETDYLTGTDGKK	2	Unmodified	1684.7944	0.79443049	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								1	3	5	4	46.524	45.751	2;3	3.5504E-10	39081	160511_QHF_FH_JSI12i_2	134.14	115.31			0.98834	1.1618	20.493	7	2	Median	0.83993	0.73175	NaN	1	1	Median	0.86558	1.0412	15.5	2	1	Median	1.0959	1.0931	20.823	2	0	Median	1.1469	1.2291	3.5424	2	0	Median	1169400000	565030000	604390000	105150000	52865000	52287000	327880000	168550000	159320000	424130000	193610000	230520000	312270000	150000000	162260000	16426	4315	15569	99632;99633;99634;99635;99636;99637;99638;99639;99640;99641;99642;99643;99644	134325;134326;134327;134328;134329;134330;134331;134332;134333;134334;134335;134336;134337;134338;134339	134328			15	
FNPFVTSDR	0	Unmodified	1081.5193	0.51925868	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.55	4	6	4				1	4	4	6	6	7	4	56.057	51.01	2	9.374E-08	45110	160511_QHF_FH_JSI10i_2	125.82	65.029			0.99268	1.0629	14.026	20	3	Median	1.4339	1.1884	9.4436	5	1	Median	0.95651	1.1035	9.9022	5	1	Median	1.0062	0.99975	21.84	6	1	Median	0.92895	1.0097	4.7083	4	0	Median	12914000000	6187400000	6726900000	2352000000	982670000	1369400000	2744800000	1515800000	1229000000	5209400000	2321200000	2888200000	2608000000	1367700000	1240200000	16427	1949;5450	15570	99645;99646;99647;99648;99649;99650;99651;99652;99653;99654;99655;99656;99657;99658;99659;99660;99661;99662;99663;99664;99665;99666;99667	134340;134341;134342;134343;134344;134345;134346;134347;134348;134349;134350;134351;134352;134353;134354;134355;134356;134357;134358;134359;134360;134361;134362;134363;134364;134365;134366;134367;134368;134369;134370;134371;134372;134373;134374;134375	134371			36	
FNPFVTSDRSK	1	Unmodified	1296.6463	0.64625011	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		41.097	39.577	3	9.9122E-05	32283	160511_QHF_FH_JSI9i_3	89.805	74.265			1.1221	1.069	203.4	2	2	Median	5.6587	4.504	NaN	1	1	Median	0.22252	0.25371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100390000	46522000	53868000	52213000	8416000	43797000	48177000	38106000	10071000	0	0	0	0	0	0	16428	1949;5450	15571	99668;99669;99670	134376;134377;134378	134378			3	
FNPILDMLAALK	1	Unmodified	1344.7475	0.74754405	3932	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	103.23	103.17	2	7.3471E-08	89957	160511_QHF_FH_JSI12i_3	138.22	109.13			1.0425	0.97104	9.2555	5	2	Median	1.3007	1.0886	NaN	1	0	Median	0.76842	0.86204	NaN	1	0	Median	1.0771	0.99889	3.9988	2	2	Median	0.90147	0.91268	NaN	1	0	Median	297350000	134560000	162790000	14627000	6124700	8502300	22778000	11974000	10804000	94196000	40974000	53222000	165750000	75491000	90260000	16429	3932	15572	99671;99672;99673;99674;99675;99676	134379;134380;134381;134382;134383;134384;134385;134386	134385			8	
FNPLNTNQFYASSMEGTTR	0	Unmodified	2176.9848	0.98476723	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.25	0.433		3	1							2		2		76.301	75.833	2	2.9926E-13	67727	160511_QHF_FH_JSI11i_3	145.23	135.18			1.346	1.1802	16.549	3	1	Median	1.346	1.1802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1982	1.1368	23.203	2	0	Median	NaN	NaN	NaN	0	0	Median	52228000	22802000	29426000	17639000	6566100	11073000	0	0	0	34588000	16235000	18353000	0	0	0	16430	3826	15573	99677;99678;99679;99680	134387;134388;134389;134390;134391;134392	134388			6	
FNPNFYR	0	Unmodified	956.45045	0.45045083	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	42.062	41.432	2	0.009769	35443	160511_QHF_FH_JSI12i_3	77.72	55.589			0.9879	0.92192	8.8092	2	0	Median	0.99801	0.86624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97791	0.98117	NaN	1	0	Median	229030000	93286000	135750000	78372000	31375000	46997000	0	0	0	0	0	0	150660000	61911000	88750000	16431	4775	15574	99681;99682	134393;134394	134394			2	
FNPNLYNDGK	1	Unmodified	1180.5513	0.55128709	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	38.857	37.498	2	0.0102	31910	160511_QHF_FH_JSI12i_2	54.608	35.337			0.74611	0.80103	92.785	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74611	0.80103	92.785	2	1	Median	31870000	13904000	17966000	0	0	0	0	0	0	0	0	0	31870000	13904000	17966000	16432	4936	15575	99683;99684	134395;134396	134395			2	
FNPPTGTDTMVK	1	Unmodified	1306.6227	0.62273747	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	1	3	2	45.114	44.644	2	0.0013476	40677	160511_QHF_FH_JSI12i_1	65.627	22.544			0.61213	0.6985	50.747	5	4	Median	NaN	NaN	NaN	0	0	Median	0.61213	0.6985	NaN	1	0	Median	0.96029	0.95433	71.073	3	3	Median	0.56221	0.59141	NaN	1	1	Median	498910000	297170000	201740000	0	0	0	119520000	81106000	38419000	240140000	132920000	107210000	139250000	83138000	56109000	16433	1790	15576	99685;99686;99687;99688;99689;99690;99691	134397;134398;134399;134400;134401;134402;134403;134404	134400			8	
FNPSGYLLLASEK	1	Unmodified	1437.7504	0.75038083	4015	Q96CU9	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.544	82.44	2	0.00011934	71543	160511_QHF_FH_JSI12i_3	89.403	66.486			0.9728	0.96079	13.792	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91404	0.87151	NaN	1	0	Median	1.0353	1.0592	NaN	1	0	Median	123480000	54915000	68567000	0	0	0	0	0	0	56025000	23733000	32292000	67458000	31183000	36275000	16434	4015	15577	99692;99693	134405;134406;134407;134408	134407			4	
FNPSISMIK	1	Unmodified	1035.5423	0.54230231	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	59.603	58.666	2	0.00315	50908	160511_QHF_FH_JSI11i_2	61.582	46.212			0.7052	0.71459	9.4428	3	1	Median	0.97019	0.8096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7052	0.71459	NaN	1	0	Median	0.59958	0.67276	NaN	1	1	Median	270790000	158940000	111850000	63795000	36770000	27025000	0	0	0	111250000	60882000	50370000	95742000	61289000	34452000	16435	2454	15578	99694;99695;99696	134409;134410	134410			2	
FNPSVFFLDFLVVPPSR	0	Unmodified	1980.0509	0.050919944	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	100.58	92.472	2;3	5.7139E-32	52820	160513_QHF_FH_JSI9Kac_6	216.39	177.76			1.1738	1.1434	16.312	6	2	Median	1.2631	1.0787	15.655	2	1	Median	1.107	1.2922	20.893	2	1	Median	1.208	1.1727	NaN	1	0	Median	0.92307	0.96862	NaN	1	0	Median	347750000	140530000	207220000	94025000	36655000	57370000	121470000	43770000	77696000	100040000	42757000	57286000	32212000	17344000	14867000	16436	708	15579	99697;99698;99699;99700;99701;99702	134411;134412;134413;134414;134415;134416	134413			6	
FNQAQSGNIQSTVMLDK	1	Unmodified	1879.9098	0.90981137	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	54.531	53.768	2	3.1993E-50	48839	160511_QHF_FH_JSI12i_1	183.96	151.44			1.0221	1.1225	22.816	5	4	Median	1.1114	0.91542	28.846	2	2	Median	0.84226	0.97523	23.395	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1946	1.26	NaN	1	0	Median	164780000	80701000	84075000	57479000	25795000	31684000	71397000	34671000	36727000	0	0	0	35901000	20236000	15665000	16437	1528	15580	99703;99704;99705;99706;99707;99708;99709	134417;134418;134419;134420;134421;134422;134423	134419			7	
FNQCGTCNEFK	1	Unmodified	1403.5598	0.55981964	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.621	24.459	2	0.012657	21457	160511_QHF_FH_JSI11i_1	54.416	21.226			0.93914	0.90703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93914	0.90703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28960000	15200000	13760000	0	0	0	0	0	0	28960000	15200000	13760000	0	0	0	16438	5250	15581	99710	134424	134424			1	
FNQGMVDTAK	1	Unmodified	1109.5175	0.51754412	3158	Q6UXH1	CRELD2	Cysteine-rich with EGF-like domain protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	25.104	24.876	2	0.0012666	22289	160511_QHF_FH_JSI12i_1	71.614	46.719			1.5082	1.603	6.6559	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3136	1.5293	NaN	1	1	Median	1.7315	1.6803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125720000	57160000	68563000	0	0	0	50266000	22418000	27847000	75457000	34741000	40716000	0	0	0	16439	3158	15582	99711;99712;99713;99714;99715	134425;134426;134427;134428;134429	134426			5	
FNQGMVDTAKK	2	Unmodified	1237.6125	0.61250714	3158	Q6UXH1	CRELD2	Cysteine-rich with EGF-like domain protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	19.533	19.547	2;3	0.00024804	15874	160511_QHF_FH_JSI12i_3	95.573	74.672			1.7488	1.7953	76.144	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7488	1.7953	76.144	2	2	Median	163050000	66860000	96186000	0	0	0	0	0	0	0	0	0	163050000	66860000	96186000	16440	3158	15583	99716;99717	134430;134431	134431			2	
FNQLPVELKK	2	Unmodified	1214.7023	0.70230842	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	46.232	45.99	2;3	0.0013395	39226	160511_QHF_FH_JSI12i_3	62.633	52.978			1.209	1.2053	10.201	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.209	1.2053	10.201	2	2	Median	191310000	84542000	106770000	0	0	0	0	0	0	0	0	0	191310000	84542000	106770000	16441	5002	15584	99718;99719	134432;134433	134432			2	
FNQLVEQYK	1	Unmodified	1167.5924	0.59242362	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.879	38.427	2	0.0060076	32930	160511_QHF_FH_JSI11i_2	63.534	45.272			1.122	1.1115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.122	1.1115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43878000	18079000	25798000	0	0	0	0	0	0	43878000	18079000	25798000	0	0	0	16442	5058	15585	99720	134434	134434			1	
FNQLVHFLR	0	Unmodified	1172.6455	0.64546224	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	68.809	58.998	3	0.00070817	49960	160511_QHF_FH_JSI10i_3	57.598	41.345			0.71181	0.78206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71181	0.78206	NaN	1	1	Median	4016600	2408900	1607700	0	0	0	0	0	0	0	0	0	4016600	2408900	1607700	16443	3670	15586	99721;99722	134435;134436	134435			2	
FNQTYQLAHGTAEEK	1	Unmodified	1735.8166	0.81656291	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.51		9	4					1	1	2	2	6	5	30.117	28.243	2;3	5.5253E-30	24243	160511_QHF_FH_JSI11i_3	222.1	204.63			1.0403	0.99239	42.089	15	5	Median	1.0876	0.92857	9.08	2	0	Median	0.81597	1.0138	3.0172	2	0	Median	1.066	1.0104	28.73	6	2	Median	1.4015	1.3984	70.665	5	3	Median	2141400000	1043600000	1097800000	272590000	118600000	153990000	395460000	231370000	164090000	753490000	331600000	421890000	719880000	362060000	357810000	16444	2509	15587	99723;99724;99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735;99736;99737	134437;134438;134439;134440;134441;134442;134443;134444;134445;134446;134447;134448;134449;134450;134451;134452;134453;134454;134455;134456;134457;134458;134459;134460;134461	134440			25	
FNQVESDK	1	Unmodified	965.44543	0.44542503	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	1	3	2	10.547	9.2787	2	0.0013022	7545	160511_QHF_FH_JSI12i_1	107.29	87.448			0.64836	0.63786	94.626	8	8	Median	1.0485	0.85401	128.58	2	2	Median	0.34957	0.41584	NaN	1	1	Median	0.99587	0.97842	82.768	3	3	Median	0.88985	0.94965	165.81	2	2	Median	2513200000	1449200000	1063900000	613070000	308850000	304220000	432540000	292840000	139700000	769270000	499710000	269560000	698270000	347800000	350470000	16445	2294	15588	99738;99739;99740;99741;99742;99743;99744;99745	134462;134463;134464;134465;134466;134467;134468;134469	134464			8	
FNQVLDQFGEK	1	Unmodified	1323.6459	0.64591575	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	3	2	56.43	55.73	2	4.2488E-06	50329	160511_QHF_FH_JSI11i_1	116.23	104.6			1.2171	1.0699	92.455	9	8	Median	1.1459	0.96556	14.127	2	1	Median	2.514	2.9445	143.17	2	2	Median	1.346	1.364	109.09	3	3	Median	0.84655	0.92831	45.745	2	2	Median	1955200000	902970000	1052300000	267900000	148050000	119860000	467270000	213450000	253820000	681550000	266600000	414950000	538520000	274870000	263650000	16446	313	15589	99746;99747;99748;99749;99750;99751;99752;99753;99754;99755	134470;134471;134472;134473;134474;134475;134476;134477;134478;134479;134480;134481	134470			12	
FNSDQLNHLFVLIQK	1	Unmodified	1814.9679	0.9679186	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	1	2	2	2	93.231	88.486	3	9.7054E-05	85715	160511_QHF_FH_JSI12i_3	73.386	69.165			0.7777	0.73017	37.742	7	1	Median	0.9818	0.82357	NaN	1	0	Median	0.51513	0.61722	23.767	2	1	Median	0.59907	0.56229	33.835	2	0	Median	1.1266	1.1408	28.529	2	0	Median	649430000	367810000	281620000	173440000	86295000	87140000	202250000	118900000	83350000	148110000	95766000	52349000	125630000	66848000	58782000	16447	5468	15590	99756;99757;99758;99759;99760;99761;99762	134482;134483;134484;134485;134486;134487	134484			5	
FNSLNELVDYHR	0	Unmodified	1505.7263	0.72629134	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	2	3	59.845	59.245	2;3	1.259E-05	52332	160511_QHF_FH_JSI10i_2	86.291	75.806			0.90456	0.89416	14.828	7	1	Median	1.0531	0.92605	NaN	1	0	Median	0.90456	1.1208	NaN	1	0	Median	0.85934	0.83932	8.9513	2	0	Median	0.80072	1.0406	17.956	3	1	Plateau	1041200000	515010000	526180000	99874000	46735000	53139000	179170000	98328000	80845000	426650000	218130000	208520000	335490000	151820000	183670000	16448	2043	15591	99763;99764;99765;99766;99767;99768;99769;99770;99771	134488;134489;134490;134491;134492;134493;134494	134491			4	
FNSSSSSLEEK	1	Unmodified	1213.5463	0.54626129	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		26.089	16.977	3	0.057756	10357	160513_QHF_FH_JSI11Kac_6	11.213	6.8723			0.84087	0.7719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84087	0.7719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58260000	32448000	25812000	0	0	0	0	0	0	58260000	32448000	25812000	0	0	0	16449	4651	15592	99772	134495	134495			1	
FNSVAGHFFFPLLQR	0	Unmodified	1778.9257	0.92565985	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.687	80.403	3	2.9551E-33	42907	160513_QHF_FH_JSI12Kac_6	139.6	121.69			0.96756	0.97972	11.012	4	0	Median	1.3494	1.1593	NaN	1	0	Median	0.75642	0.89153	NaN	1	0	Median	1.0062	0.9641	NaN	1	0	Median	0.93038	0.99558	NaN	1	0	Median	707980000	339430000	368550000	118250000	42641000	75614000	369290000	201880000	167410000	124960000	57153000	67808000	95475000	37758000	57717000	16450	5637	15593	99773;99774;99775;99776	134496;134497;134498;134499;134500;134501;134502;134503;134504	134501			9	
FNTANDDNVTQVR	0	Unmodified	1492.6906	0.69063412	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.62	5	5					1			3	3	2	3	31.472	29.895	2	9.1532E-82	26952	160511_QHF_FH_JSI12i_1	240.12	209.56			0.92108	0.93957	15.078	10	6	Median	1.2232	1.0005	7.8453	3	2	Plateau	0.77094	0.91793	26.492	3	3	Median	0.8519	0.85086	17.318	2	1	Median	0.87804	0.94094	4.8641	2	0	Median	944290000	509700000	434590000	135750000	78284000	57467000	385280000	211640000	173640000	210350000	113510000	96839000	212900000	106260000	106640000	16451	800	15594	99777;99778;99779;99780;99781;99782;99783;99784;99785;99786;99787	134505;134506;134507;134508;134509;134510;134511;134512;134513;134514;134515;134516;134517;134518	134508			14	
FNTGPVGK	1	Unmodified	818.42865	0.42865276	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				19.79	18.895	2	0.054003	16031	160511_QHF_FH_JSI9i_2	36.395	25.567			1.3802	1.1688	NaN	1	0	Median	1.3802	1.1688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116840000	29410000	87434000	116840000	29410000	87434000	0	0	0	0	0	0	0	0	0	16452	3101	15595	99788	134519	134519			1	
FNTPALK	1	Unmodified	789.43849	0.43848916	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1		1	1	1	1	35.162	34.26	2	0.012734	28933	160511_QHF_FH_JSI11i_2	68.915	42.806			1.0121	1.0369	37.09	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2679	1.5708	NaN	1	1	Median	1.0121	1.0369	NaN	1	0	Median	0.67339	0.74947	NaN	1	0	Median	397740000	200250000	197490000	0	0	0	111860000	61228000	50628000	161520000	82126000	79391000	124370000	56894000	67475000	16453	1823	15596	99789;99790;99791;99792	134520;134521;134522;134523;134524	134522			5	
FNTPQQPK	1	Unmodified	958.48723	0.48723027	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	18.413	17.802	2	0.0025205	14502	160511_QHF_FH_JSI11i_2	79.469	55.496			1.0032	0.98886	10.548	8	0	Median	1.1694	0.99546	0.59406	2	0	Median	0.75711	0.90469	9.9353	2	0	Median	1.0175	1.005	2.6349	2	0	Median	0.88385	0.93649	22.845	2	0	Median	1017500000	506310000	511180000	223150000	109800000	113350000	226130000	115320000	110800000	313060000	146330000	166730000	255150000	134850000	120290000	16454	4992	15597	99793;99794;99795;99796;99797;99798;99799;99800	134525;134526;134527;134528;134529;134530;134531;134532;134533;134534;134535	134533			11	
FNTTSVIK	1	Unmodified	908.49673	0.49673232	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		44.912	34.588	2	0.023199	19619	160513_QHF_FH_JSI11Kac_5	54.549	33.994			1.0272	1.0291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.0291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7973900	4307000	3666900	0	0	0	0	0	0	7973900	4307000	3666900	0	0	0	16455	2609	15598	99801	134536;134537	134537			2	
FNVDEYSDLVTLTK	1	Unmodified	1642.809	0.80901792	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.589	5	8	1							2	3	5	4	91.085	90.548	2	2.6768E-22	79765	160511_QHF_FH_JSI9i_2	198.49	162.15			0.65336	0.66468	51.518	11	9	Median	0.61281	0.51672	17.339	2	1	Median	0.70894	0.88542	96.472	3	2	Plateau	0.81052	0.80525	23.444	3	3	Median	0.56749	0.6056	8.2217	3	3	Median	927200000	536910000	390290000	108160000	63203000	44958000	257190000	152120000	105070000	317240000	161950000	155290000	244620000	159640000	84979000	16456	1600	15599	99802;99803;99804;99805;99806;99807;99808;99809;99810;99811;99812;99813;99814;99815	134538;134539;134540;134541;134542;134543;134544;134545;134546;134547;134548;134549;134550;134551;134552;134553;134554;134555	134548			17	
FNVEDGEIVQQVR	0	Unmodified	1531.7631	0.76307078	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								1	1	2		61.211	60.606	2	2.1465E-05	54802	160511_QHF_FH_JSI10i_1	120.96	95.743			0.78503	0.85395	45.155	4	1	Median	0.6942	0.56717	NaN	1	0	Median	0.82342	0.98732	NaN	1	0	Median	1.1105	1.0964	55.87	2	1	Median	NaN	NaN	NaN	0	0	Median	413790000	226290000	187500000	103950000	62296000	41650000	125290000	66104000	59184000	184550000	97891000	86663000	0	0	0	16457	3562	15600	99816;99817;99818;99819	134556;134557;134558;134559;134560;134561;134562	134559			7	
FNVIQPGPIK	1	Unmodified	1111.639	0.63897988	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	58.623	57.868	2	9.3827E-05	52102	160511_QHF_FH_JSI10i_1	85.161	78.99			1.0299	1.0017	18.856	6	0	Median	1.0966	0.9306	NaN	1	0	Median	0.92863	1.1161	23.587	2	0	Median	1.1988	1.1956	27.242	2	0	Median	0.91327	1.0176	NaN	1	0	Median	1058900000	579790000	479120000	165380000	75858000	89523000	234870000	134000000	100870000	406590000	217400000	189190000	252070000	152530000	99537000	16458	2754	15601	99820;99821;99822;99823;99824;99825	134563;134564;134565;134566	134564			3	
FNVLHWHIVDDQSFPYQSITFPELSNK	1	Unmodified	3260.5931	0.59309891	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.11	84.759	3;4	2.7083E-155	49546	160513_QHF_FH_JSI10Kac_6	261.46	246.41			0.97075	0.96375	12.102	8	0	Median	1.1959	1.0219	21.833	2	0	Median	0.79637	0.94227	1.7829	2	0	Median	1.1999	1.1342	10.668	2	0	Median	0.91043	0.9571	2.385	2	0	Median	3337800000	1590100000	1747700000	614060000	311420000	302630000	1019400000	511780000	507650000	985500000	418100000	567400000	718780000	348780000	369990000	16459	874	15602	99826;99827;99828;99829;99830;99831;99832;99833	134567;134568;134569;134570;134571;134572;134573;134574;134575;134576;134577;134578;134579;134580;134581;134582	134582			16	
FNVLKVTK	2	Acetyl (K)	989.59097	0.59096706	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.834	58.229	2	0.031057	31496	160513_QHF_FH_JSI11Kac_6	56.432	47.569			0.32294	0.31717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32294	0.31717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39154000	31888000	7265800	0	0	0	0	0	0	39154000	31888000	7265800	0	0	0	16460	1996	15603	99834	134583	134583			1	
FNVLLTTYEYIIK	1	Unmodified	1615.8861	0.88614603	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	1	2	1	98.292	92.656	2	7.9233E-14	49648	160513_QHF_FH_JSI9Kac_6	159.94	145.78			1.0049	1.0187	35.831	6	1	Median	1.0378	0.87203	15.234	2	1	Median	0.89894	1.0685	NaN	1	0	Median	1.415	1.3957	33.574	2	0	Median	0.57679	0.61148	NaN	1	0	Median	1319400000	711160000	608210000	250130000	112420000	137710000	330900000	196970000	133920000	424110000	199040000	225060000	314240000	202720000	111510000	16461	1736;1737	15604	99835;99836;99837;99838;99839;99840	134584;134585;134586;134587;134588;134589;134590;134591;134592	134588			9	
FNVLQYVVPEVK	1	Unmodified	1433.7919	0.79185171	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.27	3	4	3						2	2	3	3	4	100.36	99.419	2	6.2376E-23	88863	160511_QHF_FH_JSI9i_2	177.76	140.57			0.94544	0.96919	28.63	11	1	Median	1.1517	0.95131	15.611	2	0	Median	0.74599	0.90327	9.9616	2	0	Median	0.94544	0.9795	15.237	3	0	Median	0.94785	1.0088	47.648	4	1	Median	2469600000	1279900000	1189700000	440460000	225050000	215410000	549280000	315660000	233610000	766570000	380220000	386350000	713310000	358960000	354340000	16462	2502	15605	99841;99842;99843;99844;99845;99846;99847;99848;99849;99850;99851;99852	134593;134594;134595;134596;134597;134598;134599;134600;134601	134597			9	
FNVPVSLESK	1	Unmodified	1118.5972	0.59717465	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	63.664	62.362	2	0.00056139	53500	160511_QHF_FH_JSI12i_2	82.287	57.364			0.77131	0.8632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77131	0.8632	NaN	1	1	Median	163480000	84291000	79191000	0	0	0	0	0	0	0	0	0	163480000	84291000	79191000	16463	2117	15606	99853;99854;99855;99856	134602;134603;134604;134605	134603			4	
FNVPVSLESKK	2	Unmodified	1246.6921	0.69213767	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	51.816	50.952	2;3	6.6831E-05	44953	160511_QHF_FH_JSI11i_3	77.597	64.197			1.1742	1.1435	17.37	6	2	Median	1.3862	1.1446	NaN	1	0	Median	1.3139	1.5162	19.18	2	1	Median	1.2097	1.1231	NaN	1	0	Median	1.1236	1.1307	1.4476	2	1	Median	1476400000	820660000	655760000	69553000	33409000	36144000	244070000	111920000	132150000	384220000	209240000	174980000	778580000	466080000	312500000	16464	2117	15607	99857;99858;99859;99860;99861;99862	134606;134607;134608;134609	134606			4	
FNVSNFYHVK	1	Unmodified	1253.6193	0.61930707	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	56.536	56.027	2;3	9.1659E-05	49560	160511_QHF_FH_JSI11i_3	72.2	61.875			1.3288	1.3546	33.161	4	2	Median	NaN	NaN	NaN	0	0	Median	1.705	1.9661	NaN	1	1	Median	0.99893	0.95186	NaN	1	0	Median	1.3288	1.3546	25.829	2	1	Median	415260000	195430000	219840000	0	0	0	71296000	21114000	50182000	127250000	77965000	49282000	216720000	96347000	120370000	16465	2392	15608	99863;99864;99865;99866;99867	134610;134611;134612;134613	134610			4	
FNVTGTPEQYVPYSTTR	0	Unmodified	1958.9374	0.93740633	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	68.816	68.119	2	1.7335E-65	58598	160511_QHF_FH_JSI12i_2	229.32	197.89			1.0076	1.0049	12.384	7	1	Median	1.1197	0.94556	NaN	1	0	Median	0.92497	1.0928	11.848	2	0	Median	0.89282	0.88964	4.3352	2	0	Median	1.0679	1.1343	3.0117	2	1	Median	365990000	175050000	190940000	39710000	17018000	22692000	91879000	43844000	48035000	142310000	73280000	69033000	92087000	40911000	51177000	16466	5319	15609	99868;99869;99870;99871;99872;99873;99874;99875	134614;134615;134616;134617;134618;134619;134620;134621;134622;134623;134624;134625;134626;134627;134628;134629;134630;134631;134632	134618			19	
FNVTGTPEQYVPYSTTRK	1	Unmodified	2087.0324	0.032369346	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			61.386	59.862	3	0.00014813	50096	160511_QHF_FH_JSI10i_3	73.983	63.819			1.0691	1.2587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0691	1.2587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16953000	7813400	9140100	0	0	0	16953000	7813400	9140100	0	0	0	0	0	0	16467	5319	15610	99876	134633	134633			1	
FNVWDTAGQEK	1	Unmodified	1293.599	0.59896556	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.5	4	4	4				3	7	2	6	6	5	7	58.996	53.734	2	1.5746E-18	49095	160511_QHF_FH_JSI12i_1	166.55	147.45			1.016	1.0203	27.637	22	1	Median	1.1397	0.95716	16.439	5	0	Median	0.82141	0.95245	38.377	6	1	Median	1.0414	1.021	6.6473	5	0	Median	1.0393	1.1101	32.93	6	0	Median	20674000000	10581000000	10094000000	4056500000	1994200000	2062200000	5676100000	3105000000	2571100000	6702300000	3448400000	3253900000	4239600000	2033000000	2206600000	16468	2021	15611	99877;99878;99879;99880;99881;99882;99883;99884;99885;99886;99887;99888;99889;99890;99891;99892;99893;99894;99895;99896;99897;99898;99899;99900	134634;134635;134636;134637;134638;134639;134640;134641;134642;134643;134644;134645;134646;134647;134648;134649;134650;134651;134652;134653;134654;134655;134656;134657;134658;134659;134660;134661;134662;134663;134664;134665;134666;134667;134668;134669;134670;134671;134672;134673;134674;134675;134676;134677;134678;134679;134680;134681;134682;134683;134684;134685;134686;134687;134688	134647			55	
FNVWDTAGQEKFGGLR	1	Acetyl (K)	1865.906	0.90604662	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.095	75.778	2	9.2642E-23	41993	160513_QHF_FH_JSI11Kac_6	201.08	153.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	211790000	211790000	0	0	0	0	0	0	0	211790000	211790000	0	0	0	0	16469	2021	15612	99901	134689	134689	2058		1	
FNVWDVGGQDK	1	Unmodified	1263.5884	0.58840088	2005	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	1	2	65.568	64.766	2	0.00010755	55549	160511_QHF_FH_JSI12i_2	85.958	58.704			0.84787	1.0049	28.269	4	2	Median	NaN	NaN	NaN	0	0	Median	0.75711	0.94691	NaN	1	1	Median	0.61094	0.59321	NaN	1	1	Median	0.99258	1.0752	1.1626	2	0	Median	329670000	184050000	145620000	0	0	0	104100000	54543000	49552000	88709000	53144000	35565000	136860000	76359000	60503000	16470	2005	15613	99902;99903;99904;99905;99906;99907;99908	134690;134691;134692;134693;134694;134695;134696;134697	134691			8	
FNYGFEYLGVQDK	1	Unmodified	1578.7355	0.73545904	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	80.376	70.934	2	2.3159E-10	37534	160513_QHF_FH_JSI12Kac_6	127.56	103.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16471	2517	15614	99909	134698	134698			1	
FPAPGKPGNYQYTVFLR	1	Unmodified	1954.0101	0.010117761	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			75.501	69.129	3	0.0040989	37538	160513_QHF_FH_JSI10Kac_6	50.392	39.925			0.75536	0.9063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75536	0.9063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	306340000	162440000	143910000	0	0	0	306340000	162440000	143910000	0	0	0	0	0	0	16472	5285	15615	99910	134699;134700	134699			2	
FPAVGEPNIQQYAQNMGLPQNR	0	Unmodified	2471.2016	0.20157671	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			88.993	88.465	3	6.2473E-05	78614	160511_QHF_FH_JSI10i_2	55.337	46.514			0.55625	0.67752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55625	0.67752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26937000	18245000	8692800	0	0	0	26937000	18245000	8692800	0	0	0	0	0	0	16473	274	15616	99911	134701	134701			1	
FPCTLVAQK	1	Unmodified	1062.5532	0.55320134	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.669	41.741	2	0.014318	35872	160511_QHF_FH_JSI11i_2	45.489	31.91			0.88975	0.94586	35.496	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73163	0.73591	NaN	1	0	Median	1.0821	1.2157	NaN	1	1	Median	240030000	141980000	98054000	0	0	0	0	0	0	129410000	75446000	53959000	110630000	66532000	44095000	16474	4532	15617	99912;99913	134702;134703	134703			2	
FPDAGEDELLK	1	Unmodified	1232.5925	0.5924832	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	60.332	59.688	2	6.301E-05	52783	160511_QHF_FH_JSI9i_1	109.66	92.888			1.0026	1.0132	3.4447	4	1	Median	1.1472	0.9516	NaN	1	0	Median	0.87082	1.0142	NaN	1	0	Median	1.0514	1.0123	NaN	1	1	Median	0.95605	1.0279	NaN	1	0	Median	1386800000	692070000	694780000	325150000	139370000	185780000	338700000	163820000	174880000	332050000	141580000	190460000	390950000	247300000	143650000	16475	1600	15618	99914;99915;99916;99917;99918	134704;134705;134706;134707;134708;134709;134710;134711;134712;134713;134714;134715;134716;134717;134718;134719;134720;134721;134722;134723	134720			20	
FPDEDEILEK	1	Unmodified	1233.5765	0.57649879	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.396	57.738	2	0.0026869	52510	160511_QHF_FH_JSI12i_1	61.161	37.733			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16476	1169	15619	99919	134724	134724			1	
FPDENFK	1	Unmodified	895.40758	0.40758296	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	4	2								3	1	2		36.377	35.62	2	0.019546	32099	160511_QHF_FH_JSI10i_1	58.167	18.949			0.98636	0.85278	59.445	6	0	Median	1.0096	0.84234	7.3402	3	0	Median	0.73944	0.84867	NaN	1	0	Median	1.8824	1.8763	92.152	2	0	Median	NaN	NaN	NaN	0	0	Median	543280000	255010000	288270000	236500000	120640000	115870000	117010000	70393000	46619000	189760000	63983000	125780000	0	0	0	16477	1224	15620	99920;99921;99922;99923;99924;99925	134725;134726;134727;134728;134729	134727			5	
FPDREENAVHSTEPVVQENGDEAGEGR	0	Unmodified	2967.3231	0.32308465	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		4								3	1			39.015	37.989	3;4	2.3787E-13	33432	160511_QHF_FH_JSI10i_2	92.833	86.803			1.2152	1.2361	25.827	4	4	Median	1.4257	1.206	31.338	3	3	Median	1.0357	1.267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57393000	21078000	36314000	24617000	9507800	15109000	32776000	11571000	21205000	0	0	0	0	0	0	16478	2147	15621	99926;99927;99928;99929	134730;134731;134732;134733	134733			4	
FPDYLTVSPPIGDLQVFYK	1	Unmodified	2198.13	0.12995813	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	102	101.85	2	5.0011E-54	87766	160511_QHF_FH_JSI12i_2	220.4	199.1			1.1027	1.1645	3.9676	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1945	1.1976	NaN	1	0	Median	1.0179	1.1323	NaN	1	0	Median	232330000	110440000	121890000	0	0	0	0	0	0	107790000	46925000	60868000	124540000	63520000	61019000	16479	1818	15622	99930;99931	134734;134735	134734			2	
FPEEEAPSTVLSQNLFTPK	1	Unmodified	2133.063	0.063000772	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	91.277	90.792	3	3.457E-11	82207	160511_QHF_FH_JSI10i_1	105.06	96.46			0.70992	0.6649	59.799	5	2	Median	1.6078	1.3155	75.791	2	1	Median	0.42838	0.49426	NaN	1	0	Median	0.70992	0.6649	NaN	1	1	Median	0.5701	0.58762	NaN	1	0	Median	349000000	210010000	138990000	86435000	36035000	50400000	120700000	89908000	30794000	70737000	40178000	30560000	71127000	43892000	27235000	16480	817	15623	99932;99933;99934;99935;99936;99937	134736;134737;134738;134739;134740;134741;134742;134743	134739			8	
FPEHELTFDPQR	0	Unmodified	1514.7154	0.7153923	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	51.592	50.604	3	0.026941	43396	160511_QHF_FH_JSI12i_2	23.828	22.681			1.427	1.5206	38.846	3	0	Median	1.1674	0.98959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.427	1.5206	NaN	1	0	Median	1.9084	2.1489	NaN	1	0	Median	218660000	72743000	145920000	65143000	28355000	36787000	0	0	0	38512000	15718000	22794000	115010000	28670000	86336000	16481	5633	15624	99938;99939;99940	134744	134744			1	
FPEILQK	1	Unmodified	873.496	0.49600404	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.523	51.131	2	0.028086	43909	160511_QHF_FH_JSI12i_2	55.604	45.419			1.5155	1.6582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5155	1.6582	NaN	1	1	Median	224950000	50403000	174540000	0	0	0	0	0	0	0	0	0	224950000	50403000	174540000	16482	1818	15625	99941	134745;134746	134746			2	
FPELNYQLK	1	Unmodified	1150.6023	0.60226003	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	66.353	65.054	2	0.0023102	56025	160511_QHF_FH_JSI12i_2	65.246	39.141			0.94124	1.0432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94124	1.0432	NaN	1	0	Median	103890000	51453000	52440000	0	0	0	0	0	0	0	0	0	103890000	51453000	52440000	16483	1500	15626	99942	134747	134747			1	
FPEVEDVVMVNVR	0	Unmodified	1531.7705	0.77046434	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	85.111	84.542	2	0.0029339	74279	160511_QHF_FH_JSI11i_2	56.404	46.096			0.79192	0.88757	5.8271	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71685	0.88757	NaN	1	0	Median	0.90074	0.89531	NaN	1	0	Median	0.79192	0.80608	NaN	1	0	Median	138050000	84507000	53540000	0	0	0	28344000	17611000	10734000	54115000	27758000	26357000	55588000	39138000	16450000	16484	832	15627	99943;99944;99945	134748	134748			1	
FPEVIINFPDPAQK	1	Unmodified	1613.8453	0.84534384	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	95.883	95.618	2;3	5.5731E-05	86885	160511_QHF_FH_JSI11i_1	78.486	75.159			0.83779	0.87589	17.981	10	3	Median	0.78868	0.68052	11.481	2	1	Median	0.75924	0.87589	5.2836	2	1	Median	0.8359	0.81581	23.356	3	1	Median	0.87809	0.93621	4.6405	3	0	Plateau	183740000	96599000	87138000	22501000	13273000	9227900	46706000	26887000	19819000	61739000	33363000	28376000	52791000	23076000	29716000	16485	2147	15628	99946;99947;99948;99949;99950;99951;99952;99953;99954;99955	134749;134750;134751;134752;134753;134754;134755;134756;134757;134758;134759	134749			11	
FPFELVK	1	Unmodified	878.49019	0.49019038	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.372	69.481	2	0.019932	60055	160511_QHF_FH_JSI12i_2	57.559	0			0.93983	0.9429	5.8362	4	0	Median	1.0524	0.88992	NaN	1	0	Median	0.7455	0.92025	NaN	1	0	Median	0.96359	0.9661	NaN	1	0	Median	0.91666	1.0173	NaN	1	0	Median	340860000	181580000	159280000	54139000	26449000	27690000	77695000	50476000	27220000	130770000	68147000	62623000	78251000	36508000	41743000	16486	1711	15629	99956;99957;99958;99959	134760;134761;134762;134763;134764;134765;134766;134767	134761			8	
FPFIPMPLDYILPELLK	1	Unmodified	2045.1311	0.1311441	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		104.63	104.54	2	0.00028302	92254	160511_QHF_FH_JSI11i_2	69.01	49.935			2.432	2.3701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.432	2.3701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9949600	4074200	5875400	0	0	0	0	0	0	9949600	4074200	5875400	0	0	0	16487	212	15630	99960	134768	134768			1	
FPFLGVHFTPR	0	Unmodified	1316.703	0.70297712	4813	Q9H9P8	L2HGDH	L-2-hydroxyglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	79.905	70.463	3	0.0294	39075	160513_QHF_FH_JSI10Kac_6	27.005	20.972			3.1673	3.3728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1673	3.3728	NaN	1	1	Median	6732100	1564700	5167400	0	0	0	0	0	0	0	0	0	6732100	1564700	5167400	16488	4813	15631	99961;99962	134769;134770	134770			2	
FPGAYLK	1	Unmodified	794.43268	0.4326755	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	40.168	39.601	2	0.049359	33767	160511_QHF_FH_JSI12i_3	43	43			0.89003	1.0229	16.095	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87244	1.0229	NaN	1	0	Median	0.89003	0.85087	NaN	1	0	Median	1.1717	1.1726	NaN	1	0	Median	430190000	217790000	212400000	0	0	0	96981000	56579000	40401000	182210000	87887000	94321000	151000000	73322000	77678000	16489	1520	15632	99963;99964;99965	134771	134771			1	
FPGFEPLTPWILDLLGHYAVMNNPTR	0	Oxidation (M)	3013.516	0.51603456	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			100.05	92.617	3	2.7158E-13	55429	160513_QHF_FH_JSI10Kac_6	97.068	89.55			1.2162	1.2209	29.155	2	0	Median	1.1806	0.99349	NaN	1	0	Median	1.2529	1.5005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	609300000	294780000	314520000	167950000	73934000	94015000	441350000	220850000	220500000	0	0	0	0	0	0	16490	2324	15633	99966;99967	134772;134773	134773		1915	2	
FPGFEPLTPWILDLLGHYAVMNNPTR	0	Unmodified	2997.5211	0.52111994	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.84	93.967	3;4	4.7297E-65	56019	160513_QHF_FH_JSI10Kac_6	194.21	181.43			1.1007	1.1473	10.736	3	0	Median	1.2131	1.06	NaN	1	0	Median	1.0341	1.2264	9.4259	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1726400000	877330000	849120000	310100000	137810000	172300000	1416300000	739530000	676820000	0	0	0	0	0	0	16491	2324	15633	99968;99969;99970	134774;134775;134776	134775			3	
FPGLHSFAPDK	1	Unmodified	1214.6084	0.60840804	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	3	0			3							1		1	1	51.128	50.519	3	0.01895	44597	160511_QHF_FH_JSI11i_3	36.32	25.797			1.1147	1.1191	28.559	3	1	Plateau	1.4412	1.1949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9921	1.8902	NaN	1	1	Median	1.1147	1.1191	NaN	1	0	Median	61149000	25021000	36128000	16615000	7194100	9420700	0	0	0	11376000	3932700	7443300	33158000	13895000	19264000	16492	2639	15634	99971;99972;99973	134777;134778	134777			1	
FPGLHSFAPDKPGGILMMDLK	2	Unmodified	2270.1592	0.15916654	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			16							2	6	5	3	96.914	96.803	3;4	4.7353E-06	84119	160511_QHF_FH_JSI11i_3	68.42	59.373			0.80349	0.80978	22.083	16	3	Median	1.0382	0.84871	12.79	2	0	Median	0.68494	0.80273	8.9303	6	1	Median	1.0086	0.93812	27.664	5	2	Median	0.82413	0.85606	16.935	3	0	Plateau	611870000	321270000	290600000	63946000	40880000	23066000	104560000	64151000	40410000	346970000	161840000	185140000	96390000	54407000	41983000	16493	2639	15635	99974;99975;99976;99977;99978;99979;99980;99981;99982;99983;99984;99985;99986;99987;99988;99989	134779;134780;134781;134782;134783;134784;134785;134786;134787;134788;134789;134790;134791;134792;134793;134794;134795;134796;134797;134798	134780			19	
FPGQLNADLR	0	Unmodified	1129.588	0.58800695	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	50.923	50.372	2	0.00078152	43943	160511_QHF_FH_JSI11i_2	69.812	46.288			1.0256	0.82155	21.056	5	0	Plateau	1.146	0.9653	NaN	1	0	Median	0.70472	0.85622	NaN	1	0	Median	0.9093	0.89507	12.12	2	0	Median	1.3526	1.4013	NaN	1	0	Median	1245600000	635560000	610070000	237180000	103270000	133910000	255880000	153850000	102030000	550230000	274650000	275580000	202350000	103790000	98557000	16494	872;2075;2477;2824;811;4440;2430	15636	99990;99991;99992;99993;99994	134799;134800;134801;134802;134803	134802			4	
FPGQLNADLRK	1	Unmodified	1257.683	0.68296996	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.1		9	18					1	5	12	10	5	6	43.659	40.663	2;3	1.3826E-07	35699	160511_QHF_FH_JSI11i_3	113.69	104.88			0.80871	0.83221	24.944	22	4	Median	1.0523	0.859	18.853	7	1	Median	0.69571	0.83251	9.916	8	1	Median	0.86188	0.81914	7.1537	3	0	Plateau	0.72568	0.75036	48.518	4	2	Median	19058000000	10561000000	8496600000	6136600000	2956400000	3180200000	8755100000	5215000000	3540100000	3288300000	1752100000	1536100000	877540000	637310000	240230000	16495	872;2075;2477;2824;811;4440;2430	15637	99995;99996;99997;99998;99999;100000;100001;100002;100003;100004;100005;100006;100007;100008;100009;100010;100011;100012;100013;100014;100015;100016;100017;100018;100019;100020;100021;100022;100023;100024;100025;100026;100027	134804;134805;134806;134807;134808;134809;134810;134811;134812;134813;134814;134815;134816;134817;134818;134819;134820;134821;134822;134823;134824;134825;134826;134827;134828;134829;134830;134831;134832;134833;134834;134835;134836;134837;134838;134839;134840;134841;134842;134843;134844;134845;134846;134847;134848;134849;134850;134851;134852;134853;134854;134855;134856;134857;134858;134859;134860;134861;134862;134863;134864;134865;134866;134867;134868;134869;134870;134871;134872;134873;134874;134875;134876;134877;134878;134879;134880;134881;134882;134883;134884;134885;134886;134887;134888;134889;134890;134891;134892;134893;134894;134895;134896;134897;134898;134899;134900;134901;134902;134903;134904;134905;134906;134907;134908;134909;134910;134911;134912;134913;134914	134811			111	
FPHLFTGK	1	Unmodified	945.50724	0.50723743	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	2	3	4	4	49.181	45.454	2;3	2.4381E-05	39630	160511_QHF_FH_JSI11i_3	119.27	91.1			1.1134	1.0879	19.017	10	0	Median	1.3914	1.1512	17.961	2	0	Median	0.92055	1.0833	1.7864	2	0	Median	1.1597	1.0787	34.718	3	0	Median	1.0447	1.0065	10.374	3	0	Plateau	1247500000	613920000	633560000	305180000	141420000	163760000	227610000	101900000	125710000	296510000	159840000	136670000	418190000	210750000	207440000	16496	507;5432	15638	100028;100029;100030;100031;100032;100033;100034;100035;100036;100037;100038;100039;100040	134915;134916;134917;134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928;134929;134930;134931;134932;134933;134934;134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946	134917			32	
FPHLFTGKR	1	Acetyl (K)	1143.6189	0.61891314	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	1	0	0	1			By MS/MS		16	0									1			1		60.062	50.347	3	0.015843	27254	160513_QHF_FH_JSI11Kac_6	46.819	39.173			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3968400	3968400	0	0	0	0	0	0	0	3968400	3968400	0	0	0	0	16497	507;5432	15639	100041	134947	134947	255		1	
FPHLLWSGTVLK	1	Unmodified	1396.7867	0.78670675	1536	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	0				By MS/MS	9.5	6.5			1						1				2	82.315	77.49	3	0.00035066	71370	160511_QHF_FH_JSI12i_3	62.338	59.972			0.7388	0.75887	16.593	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7388	0.75887	16.593	2	1	Median	49573000	24426000	25146000	0	0	0	0	0	0	0	0	0	49573000	24426000	25146000	16498	1536	15640	100042;100043	134948;134949	134948			2	
FPHSAHQK	1	Unmodified	950.47225	0.47224891	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.93	3.35			13						1	4	4	3	3	5.0577	4.2956	2;3	0.00014286	2256	160511_QHF_FH_JSI11i_3	93.374	93.374			0.96742	0.84195	53.242	14	4	Median	1.4038	1.108	38.906	4	0	Median	0.95061	1.1003	60.742	4	3	Median	0.93753	0.89988	60.966	3	0	Plateau	0.82848	0.81923	53.991	3	1	Median	28388000000	13212000000	15176000000	4329400000	1839200000	2490200000	2057100000	1164500000	892590000	7224600000	3044200000	4180400000	14777000000	7163700000	7613000000	16499	1720	15641	100044;100045;100046;100047;100048;100049;100050;100051;100052;100053;100054;100055;100056;100057	134950;134951;134952;134953;134954;134955;134956;134957;134958;134959;134960;134961;134962;134963;134964;134965;134966;134967;134968;134969;134970;134971;134972;134973;134974;134975;134976;134977	134950			28	
FPIDYPYSPPTFR	0	Unmodified	1598.7769	0.77692993	3204	Q712K3	UBE2R2	Ubiquitin-conjugating enzyme E2 R2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.486	83.776	2	0.0006201	73768	160511_QHF_FH_JSI11i_2	85.958	71.8			0.82745	0.92135	9.4445	4	3	Median	1.2385	1.0509	NaN	1	1	Median	0.75728	0.93334	NaN	1	0	Median	0.83572	0.83615	NaN	1	1	Median	0.81926	0.90952	NaN	1	1	Median	173310000	94883000	78427000	51398000	22973000	28425000	31151000	20066000	11085000	56733000	33962000	22771000	34028000	17882000	16145000	16500	3204	15642	100058;100059;100060;100061	134978;134979;134980;134981;134982	134980			5	
FPLDYYSIPFPTPTTPLTGR	0	Unmodified	2282.1623	0.16232089	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	101.84	101.71	2	2.8529E-25	89637	160511_QHF_FH_JSI9i_2	180.78	158.2			1.3895	1.3404	18.242	2	0	Median	1.778	1.525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0859	1.1782	NaN	1	0	Median	362420000	148480000	213940000	121140000	40134000	81010000	0	0	0	0	0	0	241280000	108350000	132930000	16501	2505	15643	100062;100063	134983	134983			1	
FPLELKK	2	Unmodified	873.53239	0.53238955	1613	P48059;Q7Z4I7	LIMS1;LIMS2	LIM and senescent cell antigen-like-containing domain protein 1;LIM and senescent cell antigen-like-containing domain protein 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	40.743	40.045	3	0.0036842	33850	160511_QHF_FH_JSI12i_3	65.038	45.401			1.1033	1.1408	26.336	6	1	Median	2.4067	2.1112	NaN	1	1	Median	0.94366	1.1197	7.1363	2	0	Median	1.1033	1.0817	3.0285	2	0	Median	1.2605	1.2637	NaN	1	0	Median	361730000	157210000	204510000	18074000	6419100	11655000	91612000	44088000	47524000	91165000	40084000	51081000	160880000	66621000	94254000	16502	1613	15644	100064;100065;100066;100067;100068;100069	134984;134985;134986;134987;134988;134989;134990;134991;134992;134993;134994;134995;134996;134997;134998	134997			15	
FPLFGGWK	1	Unmodified	950.50142	0.50142377	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	3	2	2	83.09	82.418	2	0.0039248	71108	160511_QHF_FH_JSI12i_3	70.268	49.986			0.88976	0.85596	25.108	9	2	Median	0.82891	0.68968	14.289	2	0	Median	0.64635	0.79799	16.514	3	1	Median	1.2064	1.1941	15.102	2	0	Median	1.0136	1.0201	24.807	2	1	Median	3983100000	2066300000	1916800000	561420000	283530000	277890000	930840000	536620000	394220000	577270000	295110000	282170000	1913600000	951060000	962490000	16503	816	15645	100070;100071;100072;100073;100074;100075;100076;100077;100078;100079	134999;135000;135001;135002;135003;135004;135005;135006;135007;135008;135009;135010;135011;135012;135013;135014;135015;135016;135017;135018;135019;135020;135021;135022;135023;135024;135025;135026;135027;135028;135029;135030;135031	135026			33	
FPLGSYTIQNIVAGSTYLFSTK	1	Unmodified	2406.2471	0.24711315	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			66.685	65.858	3	0.057066	58513	160511_QHF_FH_JSI10i_2	17.148	8.7578			0.77183	0.93877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77183	0.93877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36206000	22161000	14045000	0	0	0	36206000	22161000	14045000	0	0	0	0	0	0	16504	5334	15646	100080	135032	135032			1	
FPLLKPSPK	2	Unmodified	1025.6274	0.62735256	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	3	1	1	41.495	40.669	3	0.0036362	34284	160511_QHF_FH_JSI10i_3	51.276	35.395			1.061	0.95531	13.23	4	1	Linear	1.099	0.89738	NaN	1	0	Median	0.96694	1.135	NaN	1	0	Median	1.2869	1.2193	NaN	1	1	Median	1.0242	1.0346	NaN	1	0	Median	1077700000	578650000	499000000	350120000	233890000	116230000	207970000	118830000	89139000	190140000	79832000	110310000	329420000	146100000	183330000	16505	4983	15647	100081;100082;100083;100084;100085;100086	135033;135034;135035;135036;135037;135038;135039;135040;135041;135042;135043;135044;135045;135046;135047;135048;135049;135050;135051;135052	135041			20	
FPLTTESAMK	1	Unmodified	1123.5583	0.5583463	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.44	4	4	4				1	1		4	3	3	4	48.505	46.269	2	0.00041204	39687	160511_QHF_FH_JSI12i_2	75.378	57.993			0.98362	0.98717	9.8846	14	0	Median	1.1688	0.95393	12.259	4	0	Median	0.8479	0.98851	5.8889	3	0	Median	1.0208	1.0242	12.347	3	0	Plateau	1.003	1.0677	5.8783	4	0	Median	12091000000	6114000000	5976700000	2268700000	1006500000	1262300000	3045700000	1527800000	1517800000	4063000000	2190600000	1872400000	2713300000	1389000000	1324200000	16506	2017	15648	100087;100088;100089;100090;100091;100092;100093;100094;100095;100096;100097;100098;100099;100100	135053;135054;135055;135056;135057;135058;135059;135060;135061;135062;135063;135064;135065;135066;135067;135068;135069;135070;135071;135072;135073;135074;135075;135076;135077;135078;135079;135080;135081;135082;135083;135084;135085;135086;135087;135088;135089	135059			37	
FPLTTESAMK	1	Oxidation (M)	1139.5533	0.55326092	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	1	0			By MS/MS	By MS/MS	8	6		1					1					1	1	40.282	34.501	2	0.016344	29486	160511_QHF_FH_JSI12i_2	47.187	21.45			1.0193	1.07	2.6394	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1054	1.0902	NaN	1	0	Median	0.93993	1.0502	NaN	1	0	Median	132370000	71237000	61132000	0	0	0	0	0	0	24228000	11858000	12371000	108140000	59379000	48762000	16507	2017	15648	100101;100102	135090;135091;135092	135091		1676	3	
FPNLVDPWTPHLYAR	0	Unmodified	1824.9311	0.93113916	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	89.961	89.676	3	0.0099312	80219	160511_QHF_FH_JSI11i_3	45.438	40.12			0.76616	0.76637	14.475	4	4	Median	NaN	NaN	NaN	0	0	Median	0.71207	0.8298	NaN	1	1	Median	0.76616	0.69798	1.9721	2	2	Median	0.90454	0.9382	NaN	1	1	Median	119500000	64970000	54531000	0	0	0	10147000	6256700	3890500	71901000	40091000	31809000	37453000	18622000	18831000	16508	2605	15649	100103;100104;100105;100106	135093;135094;135095;135096	135094			4	
FPNRLNLEAINYMAADGDFK	1	Unmodified	2298.1103	0.11030209	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			93.018	92.041	3	0.0092101	76776	160511_QHF_FH_JSI10i_3	38.453	29.048			1.3411	1.6342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3411	1.6342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6569100	2571700	3997400	0	0	0	6569100	2571700	3997400	0	0	0	0	0	0	16509	926	15650	100107	135097	135097			1	
FPPEASGYLHIGHAK	1	Unmodified	1622.8205	0.82052608	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			42							11	9	11	11	53.609	52.821	3;4	9.3536E-06	43939	160511_QHF_FH_JSI9i_3	119.87	114.15			0.96682	0.97155	17.305	39	8	Median	1.1656	0.97073	16.813	9	3	Median	0.9	1.0402	22.328	9	1	Median	1.0441	0.97799	7.8426	10	1	Median	0.94002	0.95522	19.199	11	3	Median	3717600000	1837000000	1880700000	513960000	246850000	267110000	495280000	269610000	225660000	1034800000	478330000	556460000	1673600000	842160000	831430000	16510	878	15651	100108;100109;100110;100111;100112;100113;100114;100115;100116;100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128;100129;100130;100131;100132;100133;100134;100135;100136;100137;100138;100139;100140;100141;100142;100143;100144;100145;100146;100147;100148;100149	135098;135099;135100;135101;135102;135103;135104;135105;135106;135107;135108;135109;135110;135111;135112;135113;135114;135115;135116;135117;135118;135119;135120;135121;135122;135123;135124;135125;135126;135127;135128;135129;135130;135131;135132;135133;135134;135135;135136	135117			33	
FPPLGGGGGIGYEANPGVPPATMSGSMMGSDMR	0	Unmodified	3194.4293	0.4293461	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.632	1	3	1								2	1	2	97.46	97.295	3	0.00034853	85950	160511_QHF_FH_JSI10i_2	35.028	32.918			1.0071	1.0709	13.038	5	3	Median	NaN	NaN	NaN	0	0	Median	0.77619	0.9534	16.435	2	1	Median	1.256	1.2	NaN	1	1	Median	1.019	1.0947	3.4105	2	1	Median	88186000	48377000	39809000	0	0	0	49325000	29403000	19922000	9679300	2535400	7144000	29181000	16438000	12743000	16511	1222	15652	100150;100151;100152;100153;100154	135137;135138;135139;135140;135141	135139			5	
FPQALTSNTPLKPSNK	2	Unmodified	1741.9363	0.93628412	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				49.518	47.914	3	0.0121	39333	160511_QHF_FH_JSI9i_3	46.249	40.344			1.4858	1.1832	NaN	1	1	Median	1.4858	1.1832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49720000	18806000	30914000	49720000	18806000	30914000	0	0	0	0	0	0	0	0	0	16512	5538	15653	100155	135142	135142			1	
FPQLDSTSFANSR	0	Unmodified	1468.6947	0.69465686	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.9	4	8	2					4	1	5	5	4	5	62.605	59.274	2;3	3.0441E-05	50843	160511_QHF_FH_JSI12i_2	69.92	64.743			1.0163	1.139	12.657	19	0	Median	1.3728	1.1547	5.0242	5	0	Median	1.001	1.1978	5.1538	5	0	Median	0.95252	0.94917	20.671	4	0	Median	0.92365	1.0083	11.769	5	0	Median	6358400000	3152100000	3206300000	1212200000	503640000	708550000	1668400000	889230000	779170000	1874000000	993980000	880050000	1603800000	765250000	838520000	16513	1650	15654	100156;100157;100158;100159;100160;100161;100162;100163;100164;100165;100166;100167;100168;100169;100170;100171;100172;100173;100174	135143;135144;135145;135146;135147;135148;135149;135150;135151;135152;135153;135154;135155;135156;135157;135158;135159;135160;135161	135146			18	
FPQNYNLVTENLALTEYTLYLGFHR	0	Unmodified	3015.5131	0.51305767	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.162	91.441	3	3.7548E-13	53152	160513_QHF_FH_JSI10Kac_6	91.114	79.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83463000	40822000	42641000	0	0	0	83463000	40822000	42641000	0	0	0	0	0	0	16514	2497	15655	100175	135162	135162			1	
FPSGSVLTGTLSVLK	1	Unmodified	1504.8501	0.85009487	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	94.601	94.125	2;3	0.00010335	76949	160511_QHF_FH_JSI9i_3	103.44	95.514			0.94797	0.97023	12.817	8	0	Median	1.3085	1.0939	23.6	2	0	Median	0.8129	0.94343	3.1131	2	0	Median	1.039	0.97387	18.201	2	0	Median	0.93415	0.97744	0.20011	2	0	Median	475160000	252640000	222520000	84144000	38409000	45735000	82787000	48936000	33851000	99989000	49933000	50056000	208240000	115360000	92879000	16515	2712	15656	100176;100177;100178;100179;100180;100181;100182;100183	135163;135164;135165;135166;135167;135168;135169;135170;135171;135172;135173;135174	135167			12	
FPSHFSSDLK	1	Unmodified	1163.5611	0.56112349	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	38.061	37.137	3	0.001339	31386	160511_QHF_FH_JSI12i_3	47.288	29.852			0.78546	0.80771	49.649	5	1	Median	1.4054	1.1621	86.223	2	1	Median	0.93883	1.0663	NaN	1	0	Median	0.70235	0.67021	NaN	1	0	Median	0.78546	0.80771	NaN	1	0	Median	244020000	125220000	118800000	39813000	15528000	24285000	41011000	21988000	19022000	64867000	34774000	30093000	98333000	52931000	45402000	16516	1215;1121	15657	100184;100185;100186;100187;100188	135175;135176;135177;135178;135179;135180;135181;135182;135183	135181			9	
FPSINHD	0	Unmodified	828.37662	0.37661719	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	28.534	27.818	2	0.034446	24605	160511_QHF_FH_JSI10i_1	50.127	45.728			0.89548	1.0609	13.51	3	0	Plateau	1.5817	1.3512	NaN	1	0	Median	0.89548	1.0609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0028	1.0787	NaN	1	0	Median	137250000	63372000	73873000	32318000	14143000	18175000	61483000	27391000	34092000	0	0	0	43445000	21839000	21606000	16517	1126	15658	100189;100190;100191	135184	135184			1	
FPSLLTHNENMVAK	1	Oxidation (M)	1615.8028	0.8028271	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	3	3	2	2	47.973	47.119	2;3	0.00010578	41475	160511_QHF_FH_JSI11i_3	76.588	67.538			0.84817	0.89918	22.297	8	1	Median	1.5524	1.2504	14.48	2	0	Median	0.93922	1.0845	17.254	2	0	Median	0.84817	0.81371	1.6592	2	0	Median	0.77377	0.79849	7.5501	2	1	Median	1819300000	930280000	889020000	334980000	144590000	190390000	458130000	225460000	232660000	492140000	251930000	240210000	534050000	308290000	225750000	16518	2036	15659	100192;100193;100194;100195;100196;100197;100198;100199;100200;100201	135185;135186;135187;135188;135189;135190;135191;135192;135193;135194;135195;135196;135197;135198;135199;135200;135201;135202;135203;135204;135205;135206;135207;135208;135209	135186		1694	25	
FPSLLTHNENMVAK	1	Unmodified	1599.8079	0.80791248	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.26		11	15						6	10	6	6	10	59.047	56.923	2;3	7.6494E-30	50452	160511_QHF_FH_JSI11i_3	189.13	173.87			1.0217	1.111	17.803	22	6	Median	1.4597	1.2047	11.648	7	2	Median	0.96029	1.1145	8.6555	5	1	Median	1.0467	1.0372	7.1792	4	1	Median	0.94285	0.99676	21.664	6	2	Median	11145000000	5467900000	5676600000	2170800000	853040000	1317800000	1961000000	1000600000	960480000	3084600000	1494900000	1589700000	3928100000	2119400000	1808700000	16519	2036	15659	100202;100203;100204;100205;100206;100207;100208;100209;100210;100211;100212;100213;100214;100215;100216;100217;100218;100219;100220;100221;100222;100223;100224;100225;100226;100227;100228;100229;100230;100231;100232;100233	135210;135211;135212;135213;135214;135215;135216;135217;135218;135219;135220;135221;135222;135223;135224;135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236;135237;135238;135239;135240;135241;135242;135243;135244;135245;135246;135247;135248;135249;135250;135251;135252;135253;135254;135255;135256;135257;135258;135259;135260;135261;135262;135263;135264;135265;135266;135267;135268;135269;135270;135271;135272;135273;135274;135275;135276;135277;135278;135279;135280;135281;135282;135283;135284;135285;135286;135287;135288;135289;135290;135291;135292;135293;135294;135295;135296;135297;135298;135299;135300;135301;135302;135303;135304;135305;135306;135307	135225			97	
FPSLPILSPALMDVPYR	0	Unmodified	1915.0277	0.027741661	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	102.31	102.13	2;3	0.011472	88087	160511_QHF_FH_JSI12i_2	39.338	28.853			0.89775	0.98412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89775	0.98412	NaN	1	0	Median	62838000	30888000	31950000	0	0	0	0	0	0	0	0	0	62838000	30888000	31950000	16520	1435	15660	100234;100235	135308;135309	135309			2	
FPSNSPVTHVAANTQPGLATPAVITVTANR	0	Unmodified	3030.5887	0.58868223	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				77.781	76.363	3	0.010905	62773	160511_QHF_FH_JSI9i_3	29.346	23.051			1.7632	1.5114	NaN	1	1	Median	1.7632	1.5114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9324500	2523700	6800800	9324500	2523700	6800800	0	0	0	0	0	0	0	0	0	16521	1718	15661	100236	135310	135310			1	
FPSSGPVTPQPTALTFAK	1	Unmodified	1844.9672	0.96724989	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	1	2	1	76.215	75.49	2	1.2581E-06	66127	160511_QHF_FH_JSI11i_2	102.66	83.529			0.85296	0.83471	8.7458	3	1	Plateau	0.88897	0.76417	8.0627	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85296	0.85719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69330000	38978000	30352000	42211000	24867000	17343000	0	0	0	27119000	14111000	13009000	0	0	0	16522	5709	15662	100237;100238;100239;100240;100241;100242	135311;135312;135313;135314;135315;135316;135317	135315			7	
FPVIQHFK	1	Unmodified	1014.5651	0.56508666	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							2	3	2	3	43.752	42.976	3	0.0013125	37678	160511_QHF_FH_JSI11i_3	65.252	56.038			1.0022	0.92784	57.148	9	2	Median	2.4114	2.009	109.26	2	0	Median	0.81515	0.93664	29.677	2	1	Median	1.1043	1.0224	38.418	2	1	Median	0.65874	0.66348	33.033	3	0	Plateau	666010000	342450000	323560000	90526000	38402000	52124000	144740000	82902000	61841000	120460000	55815000	64647000	310280000	165330000	144950000	16523	2645	15663	100243;100244;100245;100246;100247;100248;100249;100250;100251;100252	135318;135319;135320;135321;135322;135323;135324;135325;135326;135327;135328;135329;135330;135331;135332;135333;135334;135335;135336	135318			18	
FPVKPGDLKK	3	Unmodified	1127.6703	0.67028001	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				29.012	27.632	4	0.052018	22461	160511_QHF_FH_JSI9i_3	28.708	21.446			0.78253	0.64614	NaN	1	1	Median	0.78253	0.64614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69577000	35107000	34470000	69577000	35107000	34470000	0	0	0	0	0	0	0	0	0	16524	2456	15664	100253	135337	135337			1	
FPYDSWGTPFQQLK	1	Unmodified	1712.8199	0.81985737	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.935	89.356	2	6.9021E-05	78502	160511_QHF_FH_JSI11i_2	116.55	90.032			0.97497	0.94359	25.089	4	1	Median	0.85136	0.73914	NaN	1	1	Median	0.66836	0.79788	NaN	1	0	Median	1.1165	1.1159	NaN	1	0	Median	1.1189	1.2366	NaN	1	0	Median	213920000	116430000	97488000	37064000	21913000	15151000	63724000	40527000	23197000	67055000	31680000	35375000	46072000	22307000	23765000	16525	1772	15665	100254;100255;100256;100257	135338;135339;135340;135341	135339			4	
FPYESWGTPFQQLK	1	Unmodified	1726.8355	0.83550744	1587	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	89.413	88.794	2	0.00027163	78115	160511_QHF_FH_JSI11i_2	83.397	66.864			0.74185	0.74442	11.295	3	1	Median	0.7743	0.64829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74185	0.74442	NaN	1	0	Median	0.712	0.81093	NaN	1	0	Median	117060000	72167000	44895000	25153000	15513000	9640200	0	0	0	56837000	34281000	22556000	35072000	22373000	12699000	16526	1587	15666	100258;100259;100260	135342;135343	135343			2	
FPYGILNVHPSCLPR	0	Unmodified	1768.9083	0.90829523	4030	Q96DP5	MTFMT	Methionyl-tRNA formyltransferase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		36.091	27.155	3	0.050081	15952	160513_QHF_FH_JSI11Kac_3	30.905	10.122			0.32001	0.3165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32001	0.3165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14470000	8836300	5634000	0	0	0	0	0	0	14470000	8836300	5634000	0	0	0	16527	4030	15667	100261	135344	135344			1	
FQAFDWGSSAK	1	Unmodified	1242.5669	0.56693715	1478	P38571	LIPA	Lysosomal acid lipase/cholesteryl ester hydrolase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			61.486	60.627	2	0.011643	53697	160511_QHF_FH_JSI10i_2	55.649	41.442			0.48458	0.59846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48458	0.59846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29249000	19673000	9575300	0	0	0	29249000	19673000	9575300	0	0	0	0	0	0	16528	1478	15668	100262	135345	135345			1	
FQAHKPAK	2	Unmodified	925.51339	0.51338544	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	5.5825	5.3516	2;3	0.0058953	3208	160511_QHF_FH_JSI11i_3	51.854	32.377			0.83609	0.83428	30.565	8	0	Median	1.8983	1.5272	0.87893	2	0	Median	0.71855	0.81915	1.8494	2	0	Median	0.91727	0.87213	5.5359	2	0	Median	0.73277	0.73294	8.1956	2	0	Median	2753500000	1326400000	1427000000	624180000	177940000	446240000	517390000	280530000	236860000	605410000	299640000	305770000	1006500000	568330000	438160000	16529	5454	15669	100263;100264;100265;100266;100267;100268;100269;100270	135346;135347;135348;135349;135350;135351;135352;135353;135354;135355;135356;135357;135358	135346			13	
FQAHKPAK	2	Acetyl (K)	967.52395	0.52395013	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	19.551	12.422	3	0.0076382	7240	160513_QHF_FH_JSI12Kac_6	50.04	34.378			1.0858	1.175	393.3	3	2	Median	25.725	22.037	NaN	1	1	Median	0.0078084	0.0091455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0858	1.175	NaN	1	0	Median	49090000	24780000	24310000	12049000	282410	11766000	11694000	11614000	80142	0	0	0	25348000	12884000	12463000	16530	5454	15669	100271;100272;100273	135359;135360;135361;135362	135361	3429		4	
FQAKLEHEYIQNFK	2	Acetyl (K)	1835.9206	0.92063405	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	70.722	61.017	2;3	9.4493E-09	33064	160513_QHF_FH_JSI11Kac_6	115.14	86.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9654200	9654200	0	0	0	0	0	0	0	0	0	0	9654200	9654200	0	16531	2698	15670	100274;100275	135363;135364	135363	2639		2	
FQALCNLYGAITIAQAMIFCHTR	0	Unmodified	2698.3182	0.31820315	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	99.305	91.112	3	3.3922E-48	51677	160513_QHF_FH_JSI11Kac_6	176.48	169.63			0.95714	1.1439	19.473	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95714	1.1439	NaN	1	0	Median	1.5556	1.4959	NaN	1	0	Median	0.9524	1.0243	NaN	1	0	Median	1019300000	453600000	565740000	0	0	0	607870000	294710000	313160000	261930000	93117000	168810000	149530000	65767000	83764000	16532	5017;5423	15671	100276;100277;100278	135365;135366	135365			2	
FQALKPK	2	Unmodified	830.50142	0.50142377	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	15.215	14.799	3	0.0075831	11972	160511_QHF_FH_JSI11i_3	58.981	35.009			0.54947	0.50399	144.22	7	7	Median	0.89637	0.71938	180.4	2	2	Median	0.18813	0.221	NaN	1	1	Median	1.8484	1.7221	173.77	2	2	Median	0.96571	0.99255	181.4	2	2	Median	1621000000	790720000	830260000	353910000	180660000	173250000	196870000	121730000	75140000	315270000	113120000	202150000	754930000	375210000	379720000	16533	4727	15672	100279;100280;100281;100282;100283;100284;100285	135367;135368;135369;135370;135371;135372;135373	135368			7	
FQAMYTSHLFNLDPSDPNFKK	2	Unmodified	2499.1893	0.18928069	4729	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	79.066	78.811	4	0.058226	68447	160511_QHF_FH_JSI12i_3	13.872	6.4259			0.51663	0.53878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51663	0.53878	NaN	1	1	Median	14274000	8197300	6076800	0	0	0	0	0	0	0	0	0	14274000	8197300	6076800	16534	4729	15673	100286	135374	135374			1	
FQAPGAR	0	Unmodified	745.38712	0.38712229	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.623	13.66	2	0.033152	10592	160511_QHF_FH_JSI12i_3	52.231	20.118			1.3712	1.3169	21.087	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2396	1.1345	NaN	1	0	Median	1.5168	1.5286	NaN	1	1	Median	175230000	65129000	110100000	0	0	0	0	0	0	93051000	33761000	59290000	82178000	31368000	50810000	16535	3479	15674	100287;100288	135375;135376	135376			2	
FQASQGENLEGK	1	Unmodified	1306.6153	0.61534391	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	24.576	23.974	2	0.00023203	20995	160511_QHF_FH_JSI10i_1	92.611	63.138			0.99089	0.87075	45.529	6	5	Median	1.0431	0.87075	44.748	2	2	Median	0.45157	0.52863	NaN	1	0	Median	0.84383	0.80309	63.357	2	2	Median	1.2597	1.3337	NaN	1	1	Median	246030000	134520000	111520000	67624000	32139000	35484000	42352000	30773000	11579000	93306000	49313000	43993000	42752000	22294000	20459000	16536	3260	15675	100289;100290;100291;100292;100293;100294	135377;135378;135379;135380;135381;135382;135383	135381			7	
FQDDDQTR	0	Unmodified	1023.4258	0.42575222	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			7.734	7.2942	2	0.021583	4721	160511_QHF_FH_JSI9i_1	44.753	33.88			1.0289	1.0089	1.5928	2	0	Median	1.227	0.99761	NaN	1	0	Median	0.86274	1.0203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	849680000	434210000	415480000	296440000	130110000	166320000	553250000	304090000	249150000	0	0	0	0	0	0	16537	5032	15676	100295;100296	135384	135384			1	
FQDDNVEGDK	1	Unmodified	1165.4887	0.48874641	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	15.612	15.221	2	0.00013329	12647	160511_QHF_FH_JSI10i_1	83.948	59.025			1.5855	1.5005	15.568	5	3	Median	1.6499	1.3457	NaN	1	1	Median	1.2504	1.5005	NaN	1	0	Median	1.3553	1.3206	23.306	2	2	Median	1.588	1.6696	NaN	1	0	Median	567570000	264540000	303040000	101680000	39157000	62523000	127450000	72203000	55251000	180040000	79001000	101040000	158400000	74176000	84221000	16538	3862	15677	100297;100298;100299;100300;100301	135385;135386;135387;135388;135389	135387			5	
FQDELESGK	1	Unmodified	1051.4822	0.48220447	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	23.29	23.015	2	0.00065147	19872	160511_QHF_FH_JSI11i_1	87.308	63.153			1.3041	1.4605	53.812	4	4	Median	NaN	NaN	NaN	0	0	Median	0.87256	1.0282	NaN	1	1	Median	1.3981	1.3741	78.651	2	2	Median	1.9492	2.0746	NaN	1	1	Median	877580000	292180000	585400000	0	0	0	256010000	90178000	165830000	286910000	118970000	167940000	334660000	83030000	251630000	16539	238	15678	100302;100303;100304;100305	135390;135391;135392;135393	135390			4	
FQDLGAAYEVLSDSEK	1	Unmodified	1770.8312	0.83120992	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								3	4	6	3	80.086	79.464	2;3	1.5646E-27	72086	160511_QHF_FH_JSI10i_1	144.68	120.83			1.0016	1.0374	67.989	14	13	Median	0.49438	0.41705	69.016	3	3	Plateau	0.61255	0.76681	64.69	3	2	Median	0.96898	0.97401	78.704	5	5	Median	1.4793	1.6395	86.118	3	3	Median	1830300000	1096400000	733920000	207200000	109590000	97604000	380520000	232540000	147980000	866800000	552770000	314020000	375820000	201520000	174310000	16540	5251	15679	100306;100307;100308;100309;100310;100311;100312;100313;100314;100315;100316;100317;100318;100319;100320;100321	135394;135395;135396;135397;135398;135399;135400;135401;135402;135403;135404;135405;135406;135407;135408;135409;135410	135402			17	
FQDLGVK	1	Unmodified	805.4334	0.43340378	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			28.12	27.445	2	0.025293	23724	160511_QHF_FH_JSI9i_2	57.463	31.355			0.51949	0.52123	3.9767	2	2	Median	0.60093	0.50678	NaN	1	1	Median	0.4491	0.5361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195940000	107020000	88926000	64797000	38765000	26032000	131150000	68252000	62894000	0	0	0	0	0	0	16541	5298	15680	100322;100323	135411;135412	135412			2	
FQDNFEFVQWFK	1	Unmodified	1633.7565	0.75652884	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	2	3	1	2	99.613	97.754	2	8.0884E-40	46867	160513_QHF_FH_JSI9Kac_6	199.49	183.95			0.88878	0.97056	5.4724	5	1	Median	1.1003	0.94724	3.4402	2	0	Median	0.8698	1.0492	NaN	1	1	Median	0.88878	0.91826	NaN	1	0	Median	0.8842	0.99216	NaN	1	0	Median	1348000000	675050000	672970000	342660000	164800000	177860000	237520000	121140000	116390000	419480000	219650000	199830000	348360000	169460000	178890000	16542	2698	15681	100324;100325;100326;100327;100328;100329;100330;100331	135413;135414;135415;135416;135417;135418;135419;135420;135421;135422;135423;135424	135421			12	
FQDQVLDLLK	1	Unmodified	1217.6656	0.66558856	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		2	1	77.055	76.479	2	0.0011887	73026	160511_QHF_FH_JSI11i_2	78.098	55.861			0.94555	0.84906	36.657	4	3	Linear	0.5703	0.48608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56307	0.54584	59.145	2	1	Median	0.37828	0.41179	NaN	1	1	Median	177210000	115900000	61315000	34377000	20950000	13427000	0	0	0	105050000	66921000	38131000	37783000	28026000	9757700	16543	5034	15682	100332;100333;100334;100335	135425;135426;135427;135428	135428			4	
FQDTAEALAAFTALMEGK	1	Unmodified	1912.9241	0.92406445	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	102.37	102.27	2;3	2.163E-07	88201	160511_QHF_FH_JSI12i_2	90.581	80.66			1.4153	1.5845	54.079	5	1	Median	1.2666	1.0563	NaN	1	0	Median	2.1409	2.6015	70.123	2	1	Median	1.4153	1.435	NaN	1	0	Median	2.1366	2.413	NaN	1	0	Median	547800000	194510000	353300000	68240000	27492000	40749000	214350000	44194000	170150000	127440000	53638000	73804000	137780000	69184000	68591000	16544	5544	15683	100336;100337;100338;100339;100340	135429;135430;135431;135432	135430			4	
FQDTDGK	1	Unmodified	809.35555	0.35554739	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.6715	3.3728	2	0.0068663	4068	160511_QHF_FH_JSI10i_1	89.55	58.26			0.90881	1.0064	10.278	7	0	Median	1.2537	1.0381	NaN	1	0	Median	0.90576	1.0755	9.3946	2	0	Median	0.89142	0.87681	3.9553	2	0	Median	0.90625	0.98018	8.7654	2	0	Median	3183400000	1595100000	1588300000	518530000	192270000	326260000	866190000	477750000	388450000	843430000	453080000	390350000	955220000	472000000	483230000	16545	1764	15684	100341;100342;100343;100344;100345;100346;100347	135433;135434;135435;135436;135437;135438;135439;135440;135441;135442;135443	135438			11	
FQDTDGKHLLPK	2	Acetyl (K)	1439.7409	0.74087877	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.5	0.5							1	1				1	1	54.836	44.145	2;3	0.0036275	24324	160513_QHF_FH_JSI11Kac_5	68.893	49.65			0.49456	0.49881	109.62	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24066	0.22977	NaN	1	0	Median	1.0163	1.0829	NaN	1	0	Median	11746000	8056800	3688800	0	0	0	0	0	0	6477600	4939000	1538600	5268000	3117900	2150200	16546	1764	15685	100348;100349	135444;135445	135445	1776		2	
FQDVGPQAPVGSVYQK	1	Unmodified	1718.8628	0.86278482	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		52.491	52.08	2	0.00018704	47138	160511_QHF_FH_JSI11i_1	78.401	57.363			1.0036	0.97485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0036	0.97485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59283000	33870000	25413000	0	0	0	0	0	0	59283000	33870000	25413000	0	0	0	16547	5346	15686	100350	135446	135446			1	
FQEAEERPK	1	Unmodified	1132.5513	0.55128709	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.85		7	2					1		2	1	3	4	9.6632	9.3253	2;3	6.736E-05	6827	160511_QHF_FH_JSI11i_2	111.61	92.876			1.0062	0.90853	13.081	9	0	Median	1.0141	0.85659	0.23011	2	0	Median	0.78324	0.9682	NaN	1	0	Median	0.88509	0.90646	0.32263	2	0	Median	1.0721	1.1247	13.504	4	0	Median	1354400000	724540000	629830000	273660000	138140000	135520000	77875000	47324000	30551000	495530000	291320000	204210000	507300000	247750000	259550000	16548	3852	15687	100351;100352;100353;100354;100355;100356;100357;100358;100359;100360	135447;135448;135449;135450;135451;135452;135453;135454;135455;135456;135457;135458;135459;135460	135453			14	
FQEDIISIWNK	1	Unmodified	1391.7085	0.70851601	431	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		84.413	83.832	2	0.0014585	73830	160511_QHF_FH_JSI9i_2	76.143	56.112			0.87692	0.82865	44.18	2	2	Median	0.71626	0.60631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0736	1.1325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90377000	52992000	37385000	52495000	33215000	19280000	0	0	0	37883000	19777000	18105000	0	0	0	16549	431	15688	100361;100362	135461;135462	135461			2	
FQEDQEMAR	0	Unmodified	1152.487	0.48697227	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		18.237	17.736	2	0.016097	15078	160511_QHF_FH_JSI10i_1	43.442	29.285			0.83155	0.8464	20.48	3	0	Median	1.4496	1.1736	NaN	1	0	Median	0.72667	0.8464	NaN	1	0	Median	0.83155	0.8048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176880000	92979000	83900000	50178000	25793000	24385000	48225000	28816000	19409000	78475000	38369000	40106000	0	0	0	16550	4352	15689	100363;100364;100365	135463	135463			1	
FQEHIIQAPK	1	Unmodified	1209.6506	0.6506072	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	34.871	33.935	2;3	8.1844E-05	29681	160511_QHF_FH_JSI10i_2	77.379	71.598			0.84637	0.94615	33.274	4	2	Median	1.4572	1.213	NaN	1	1	Median	0.99568	1.2307	NaN	1	0	Median	0.71946	0.738	NaN	1	0	Median	0.57944	0.64836	NaN	1	1	Median	490090000	215920000	274170000	68520000	29436000	39083000	182260000	80961000	101300000	224090000	95378000	128720000	15212000	10146000	5065900	16551	5296	15690	100366;100367;100368;100369;100370	135464;135465;135466;135467;135468;135469	135469			6	
FQEHIIQAPKPVEAIK	2	Unmodified	1847.0305	0.030518853	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	1	2	2	51.974	51.463	2;3;4	2.7872E-12	43823	160511_QHF_FH_JSI12i_3	198.46	157.87			0.90907	0.97191	12.919	6	6	Median	1.253	1.0723	NaN	1	1	Median	0.83756	0.99999	NaN	1	1	Median	0.89094	0.84757	15.332	2	2	Median	0.9038	0.93501	13.183	2	2	Median	3569500000	1849400000	1720100000	299320000	142860000	156470000	92161000	47375000	44786000	1275000000	663700000	611290000	1903100000	995460000	907590000	16552	5296	15691	100371;100372;100373;100374;100375;100376;100377	135470;135471;135472;135473;135474;135475;135476	135476			7	
FQEHLQLQNLGINPANIGFSTLTMESDK	1	Oxidation (M)	3160.5499	0.54991346	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		100.9	100.9	3	4.2217E-42	89883	160511_QHF_FH_JSI11i_3	176.28	169.7			1.721	1.6209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.721	1.6209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	198720000	83955000	114760000	0	0	0	0	0	0	198720000	83955000	114760000	0	0	0	16553	2155	15692	100378	135477;135478	135477		1796	2	
FQEHLQLQNLGINPANIGFSTLTMESDK	1	Unmodified	3144.555	0.55499884	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			101.16	101.09	3;4	1.7785E-43	89585	160511_QHF_FH_JSI10i_2	185.02	173.17			0.9671	1.1874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9671	1.1874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	573440000	332470000	240970000	0	0	0	573440000	332470000	240970000	0	0	0	0	0	0	16554	2155	15692	100379;100380	135479;135480	135480			2	
FQELIFEDFAR	0	Unmodified	1413.6929	0.69286595	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.897	89.417	2	1.9076E-13	77216	160511_QHF_FH_JSI12i_2	131.28	96.752			2.6384	3.2023	51.437	3	3	Plateau	6.5067	5.5626	NaN	1	1	Median	3.9034	4.7947	NaN	1	1	Median	2.0784	2.1387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1367200000	223640000	1143600000	451500000	46983000	404510000	491400000	84565000	406840000	424330000	92094000	332240000	0	0	0	16555	4260	15693	100381;100382;100383;100384	135481;135482;135483;135484	135481			4	
FQELLASPAYR	0	Unmodified	1293.6717	0.67173657	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.376	55.02	2	0.00043136	47096	160511_QHF_FH_JSI12i_2	87.298	32.69			0.70021	0.8036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70021	0.8036	NaN	1	1	Median	47544000	28170000	19373000	0	0	0	0	0	0	0	0	0	47544000	28170000	19373000	16556	4984	15694	100385	135485	135485			1	
FQELLQDLEK	1	Unmodified	1261.6554	0.65541781	3681	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	69.922	69.236	2	9.8207E-05	60530	160511_QHF_FH_JSI11i_2	100.48	63.001			0.065897	0.068883	16.535	5	5	Median	0.087331	0.074707	NaN	1	1	Median	0.060205	0.072017	15.306	2	2	Median	0.065897	0.068883	NaN	1	1	Median	0.045821	0.052121	NaN	1	1	Median	305770000	296440000	9326900	37504000	35102000	2401600	100440000	97021000	3416200	102050000	99768000	2279100	65784000	64554000	1229900	16557	3681	15695	100386;100387;100388;100389;100390;100391;100392	135486;135487;135488;135489;135490;135491;135492	135491			7	
FQELSQPR	0	Unmodified	1003.5087	0.50869399	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	22.376	21.604	2	0.0038407	17909	160511_QHF_FH_JSI12i_2	70.525	2.3013			1.274	1.3525	35.767	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6908	1.7418	NaN	1	0	Median	0.95996	1.0503	NaN	1	0	Median	119110000	54611000	64503000	0	0	0	0	0	0	58250000	23386000	34864000	60864000	31225000	29639000	16558	404	15696	100393;100394	135493;135494	135493			2	
FQESEERPK	1	Unmodified	1148.5462	0.54620171	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.2		7	4					3		2	3	5	4	9.6101	7.4037	2;3	3.2582E-07	6097	160511_QHF_FH_JSI12i_3	144.77	127.38			1.1295	1.0555	22.979	14	1	Median	1.3473	1.1299	9.8532	2	0	Median	0.72828	0.9074	47.055	3	0	Plateau	1.1208	1.0572	9.5735	5	1	Median	0.9927	1.0459	21.842	4	0	Median	2732700000	1399000000	1333600000	499790000	211330000	288470000	510370000	275250000	235120000	1205900000	638870000	567020000	516610000	273580000	243030000	16559	1417	15697	100395;100396;100397;100398;100399;100400;100401;100402;100403;100404;100405;100406;100407;100408	135495;135496;135497;135498;135499;135500;135501;135502;135503;135504;135505	135503			11	
FQETSDEFEAARK	1	Unmodified	1556.7107	0.71070086	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	28.904	28.236	2;3	7.6178E-11	23801	160511_QHF_FH_JSI12i_2	122.64	114.91			0.94546	0.94089	22.715	9	1	Median	1.1389	0.99579	27.667	2	0	Median	0.74855	0.91901	3.3264	2	1	Median	1.3452	1.3799	30.112	3	0	Median	0.95724	1.0329	13.869	2	0	Median	997820000	503630000	494180000	213430000	110290000	103150000	216290000	123860000	92423000	302210000	141450000	160760000	265890000	128030000	137860000	16560	2560	15698	100409;100410;100411;100412;100413;100414;100415;100416;100417;100418;100419	135506;135507;135508;135509;135510;135511;135512;135513;135514;135515;135516;135517;135518;135519	135507			14	
FQEYHIQQNEALAAK	1	Unmodified	1788.8795	0.87949752	5661	Q9Y5J7	TIMM9	Mitochondrial import inner membrane translocase subunit Tim9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.78		9						1	5	5	3	4	3	44.984	40.818	2;3	6.9683E-30	34987	160511_QHF_FH_JSI11i_2	209.64	167.25			0.83064	0.81378	26.457	9	3	Median	1.1742	1.0098	37.944	2	1	Median	0.67662	0.81378	NaN	1	0	Median	0.73973	0.7664	29.004	3	1	Median	0.84851	0.97354	17.07	3	1	Plateau	1222900000	662250000	560640000	149910000	83556000	66353000	262730000	152020000	110710000	458690000	231050000	227650000	351560000	195630000	155930000	16561	5661	15699	100420;100421;100422;100423;100424;100425;100426;100427;100428;100429;100430;100431;100432;100433;100434	135520;135521;135522;135523;135524;135525;135526;135527;135528;135529;135530;135531;135532;135533;135534;135535;135536;135537;135538;135539	135531			20	
FQFDGDKK	2	Unmodified	983.47125	0.47124585	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.494		11	8							2	4	7	6	20.839	20.391	2;3	0.0015637	16586	160511_QHF_FH_JSI12i_3	119.27	60.069			1.1245	1.2679	74.947	19	18	Median	1.4805	1.2601	68.208	2	2	Median	0.96895	1.1812	105.4	4	4	Median	1.3365	1.338	77.824	7	7	Median	1.1209	1.2503	71.413	6	5	Median	5216200000	2556100000	2660100000	394940000	190880000	204050000	587880000	307790000	280090000	1979100000	928070000	1051100000	2254200000	1129300000	1124900000	16562	1764	15700	100435;100436;100437;100438;100439;100440;100441;100442;100443;100444;100445;100446;100447;100448;100449;100450;100451;100452;100453	135540;135541;135542;135543;135544;135545;135546;135547;135548;135549;135550;135551;135552;135553;135554;135555;135556;135557;135558	135558			19	
FQFLPHAYYQQEK	1	Unmodified	1697.8202	0.82019173	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	59.568	59.434	2;3	2.3226E-05	51188	160511_QHF_FH_JSI12i_3	94.09	83.714			2.1511	2.1161	8.809	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0788	1.9883	NaN	1	0	Median	2.2259	2.2521	NaN	1	0	Median	351600000	104600000	247000000	0	0	0	0	0	0	180890000	38818000	142070000	170710000	65781000	104930000	16563	708	15701	100454;100455;100456	135559;135560;135561;135562;135563	135561			5	
FQFNLQDFR	0	Unmodified	1213.588	0.58800695	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	82.621	81.983	2	0.0043924	72905	160511_QHF_FH_JSI10i_2	56.916	46.086			1.0867	1.0508	20.465	7	0	Median	1.2033	1.0508	NaN	1	0	Median	0.87661	1.0059	25.878	2	0	Median	0.95713	0.9524	14.28	2	0	Median	1.0297	1.1093	37.324	2	0	Median	392560000	191620000	200940000	33556000	17538000	16018000	70388000	37334000	33054000	141380000	64961000	76415000	147240000	71789000	75452000	16564	2732	15702	100457;100458;100459;100460;100461;100462;100463	135564;135565;135566;135567;135568;135569;135570;135571;135572;135573	135573			9	
FQFPSHVTDVSEEAK	1	Unmodified	1719.8104	0.8104149	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.573	57.319	2	2.0109E-05	50890	160511_QHF_FH_JSI11i_3	84.289	63.512			1.0297	1.0654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0297	1.0654	NaN	1	0	Median	24133000	10482000	13651000	0	0	0	0	0	0	0	0	0	24133000	10482000	13651000	16565	5677	15703	100464;100465	135574;135575;135576	135574			3	
FQFVGIENIHVMR	0	Unmodified	1588.8184	0.81841759	5483	Q9Y217	MTMR6	Myotubularin-related protein 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.693	80.58	3	0.00051882	71918	160511_QHF_FH_JSI11i_3	45.79	40.989			0.89633	0.89942	19.504	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0934	1.0324	NaN	1	0	Median	0.73476	0.78355	NaN	1	1	Median	43172000	25993000	17179000	0	0	0	0	0	0	22498000	15032000	7466400	20674000	10961000	9712400	16566	5483	15704	100466;100467	135577;135578;135579	135577			3	
FQGAGSNK	1	Unmodified	807.38752	0.38751622	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	5.3738	4.9874	2	0.0093738	2896	160511_QHF_FH_JSI12i_2	64.757	20.147			1.238	1.1289	3.4984	3	1	Plateau	1.3009	1.0971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1716	1.1617	NaN	1	0	Median	1.0405	1.1689	NaN	1	1	Median	588280000	252850000	335440000	216640000	88535000	128110000	0	0	0	211390000	85592000	125800000	160250000	78722000	81526000	16567	2325	15705	100468;100469;100470	135580;135581;135582	135580			3	
FQGAGSNKK	2	Unmodified	935.48248	0.48247924	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	2	1	4.5754	4.292	2;3	2.1201E-05	2196	160511_QHF_FH_JSI10i_3	106.6	78.087			1.056	1.218	184	8	4	Median	1.9208	1.5281	24.509	2	0	Median	1.031	1.1992	23.51	3	1	Median	1.3808	1.2887	153.12	2	2	Median	0.0092041	0.0092645	NaN	1	1	Median	8291900000	4074500000	4217400000	3080400000	1152600000	1927800000	3332300000	1857100000	1475200000	1843200000	1029600000	813680000	35937000	35238000	698940	16568	2325	15706	100471;100472;100473;100474;100475;100476;100477;100478	135583;135584;135585;135586;135587;135588;135589;135590;135591;135592	135585			10	
FQGASNLTLSETQNGDVSEETMGSRK	1	Unmodified	2785.2825	0.28246539	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			53.564	52.32	3	8.9341E-10	43685	160511_QHF_FH_JSI10i_3	73.546	60.358			0.88703	1.072	3.6423	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88703	1.072	3.6423	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86122000	52918000	33205000	0	0	0	86122000	52918000	33205000	0	0	0	0	0	0	16569	5042	15707	100479;100480	135593;135594;135595;135596;135597	135594			5	
FQGEDTVVIASK	1	Unmodified	1292.6612	0.66123147	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.759	42.095	2	0.00018235	38028	160511_QHF_FH_JSI11i_1	81.625	36.543			0.60391	0.65094	10.046	3	1	Plateau	0.68199	0.55562	NaN	1	1	Median	0.59063	0.67907	NaN	1	0	Median	0.62842	0.60868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	874260000	570260000	304000000	278550000	179850000	98706000	318230000	217100000	101130000	277480000	173320000	104170000	0	0	0	16570	1400	15708	100481;100482;100483;100484	135598;135599;135600	135598			3	
FQGIKHECQANGPEDLNR	1	Acetyl (K)	2153.9912	0.99124959	1925	P60981	DSTN	Destrin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.425	36.75	3	0.033395	20005	160513_QHF_FH_JSI11Kac_6	39.657	23.892			0.15897	0.15376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15897	0.15376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8615300	8250800	364490	0	0	0	0	0	0	8615300	8250800	364490	0	0	0	16571	1925	15709	100485	135601	135601			1	
FQGPDNGQGPK	1	Unmodified	1143.5309	0.530886	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	15.344	13.479	2	4.8585E-07	11471	160511_QHF_FH_JSI12i_1	115.71	103.09			0.99092	1.0191	13.843	5	0	Linear	1.1162	0.90145	NaN	1	0	Median	0.96579	1.1353	NaN	1	0	Median	1.0098	0.98432	NaN	1	0	Median	1.0627	1.1468	16.687	2	0	Median	912770000	432480000	480290000	175840000	76456000	99385000	253820000	127120000	126700000	220280000	100350000	119930000	262820000	128550000	134270000	16572	328	15710	100486;100487;100488;100489;100490	135602;135603;135604;135605;135606;135607;135608;135609;135610	135605			9	
FQGQDTILDYTLR	0	Unmodified	1568.7835	0.78347187	1458	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	1	2	76.207	75.406	2	0.00071795	65104	160511_QHF_FH_JSI12i_2	82.417	60.424			0.94776	0.97624	8.4268	6	2	Median	1.1307	0.97024	NaN	1	0	Median	0.87105	1.0418	10.403	2	0	Median	0.93099	0.94603	NaN	1	0	Median	0.99316	1.0624	11.091	2	2	Median	235690000	121380000	114310000	38810000	18130000	20680000	50871000	25293000	25578000	62842000	36169000	26672000	83171000	41791000	41380000	16573	1458	15711	100491;100492;100493;100494;100495;100496;100497	135611;135612;135613;135614;135615;135616;135617	135612			7	
FQGQHVAK	1	Unmodified	913.477	0.47699993	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.9339	6.0295	3	0.0047868	3598	160511_QHF_FH_JSI12i_3	47.657	36.436			1.1503	1.1317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1503	1.1317	NaN	1	0	Median	217920000	96081000	121840000	0	0	0	0	0	0	0	0	0	217920000	96081000	121840000	16574	3147	15712	100498	135618	135618			1	
FQGQPDIYK	1	Unmodified	1094.5397	0.53965977	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.079	32.837	2	0.033191	29316	160511_QHF_FH_JSI11i_1	47.574	27.788			1.0088	0.97988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0088	0.97988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75132000	38178000	36953000	0	0	0	0	0	0	75132000	38178000	36953000	0	0	0	16575	4247	15713	100499	135619	135619			1	
FQGVSLPVHLR	0	Unmodified	1251.7088	0.70879078	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	64.936	64.287	3	1.7714E-06	56940	160511_QHF_FH_JSI10i_2	93.345	80.555			0.63658	1.236	46.697	6	2	Linear	0.89843	0.75457	NaN	1	0	Median	0.65654	0.79827	NaN	1	0	Median	0.43992	0.41798	49.613	2	1	Median	0.63806	0.68997	64.073	2	1	Median	174320000	104020000	70301000	22684000	10164000	12520000	36469000	20245000	16224000	39227000	25461000	13766000	75943000	48153000	27790000	16576	5128	15714	100500;100501;100502;100503;100504;100505;100506	135620;135621;135622;135623;135624;135625;135626	135626			7	
FQHQGFGMLLMEEAER	0	Unmodified	1921.8815	0.88148813	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0		By MS/MS			3	0			3								3			79.18	77.803	3	0.0064739	65306	160511_QHF_FH_JSI10i_3	43.297	32.242			1.1268	1.3577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1268	1.3577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7649800	3124100	4525700	0	0	0	7649800	3124100	4525700	0	0	0	0	0	0	16577	4815	15715	100507;100508;100509	135627;135628;135629	135628			3	
FQHVGTSVFLSVTGEQYGSPIR	0	Unmodified	2408.2125	0.21245898	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			80.413	79.063	3	1.0608E-06	66293	160511_QHF_FH_JSI10i_3	70.99	55.399			0.74639	0.87303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74639	0.87303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17842000	9094100	8747500	0	0	0	17842000	9094100	8747500	0	0	0	0	0	0	16578	4862	15716	100510;100511	135630;135631;135632	135631			3	
FQHVMSITVR	0	Unmodified	1216.6387	0.63866231	4869	Q9HD23	MRS2	Magnesium transporter MRS2 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	1	4		1	48.673	39.717	2;3	0.00032782	21902	160513_QHF_FH_JSI10Kac_6	69.786	59.793			1.4012	1.686	27.857	5	4	Median	1.2607	1.0734	NaN	1	0	Median	1.4012	1.686	21.125	3	3	Median	NaN	NaN	NaN	0	0	Median	1.9012	2.0812	NaN	1	1	Median	77932000	35353000	42579000	8137400	3061400	5076000	64491000	30401000	34089000	0	0	0	5303800	1890200	3413600	16579	4869	15717	100512;100513;100514;100515;100516;100517	135633;135634;135635;135636;135637;135638	135636			6	
FQIATVTEK	1	Unmodified	1035.5601	0.56006086	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.52	4	4	1				2	1		3	4	3	2	48.983	45.456	2	9.3524E-05	38839	160511_QHF_FH_JSI12i_2	106.42	61.731			0.99315	1.0978	11.704	11	0	Median	1.3244	1.0949	2.2285	2	0	Median	0.84122	1.013	13.865	4	0	Median	0.97562	0.97014	11.106	3	0	Median	1.1229	1.2132	3.0022	2	0	Median	3833300000	1822700000	2010600000	669450000	309670000	359780000	988950000	464790000	524160000	1250700000	600090000	650630000	924130000	448120000	476010000	16580	1301	15718	100518;100519;100520;100521;100522;100523;100524;100525;100526;100527;100528;100529	135639;135640;135641;135642;135643;135644;135645;135646;135647;135648;135649;135650;135651;135652;135653;135654;135655	135643			17	
FQIEANFPR	0	Unmodified	1120.5665	0.56654322	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		63.316	62.576	2	0.0087808	54386	160511_QHF_FH_JSI11i_2	51.864	15.163			1.0183	0.94349	9.9344	2	0	Median	1.1725	1.0122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88449	0.87949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159130000	70300000	88827000	58770000	28228000	30542000	0	0	0	100360000	42072000	58285000	0	0	0	16581	4013	15719	100530;100531	135656	135656			1	
FQIGELANTLTSK	1	Unmodified	1420.7562	0.75619449	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	83.837	83.37	2	5.6898E-05	72459	160511_QHF_FH_JSI12i_3	128.85	113.7			0.86494	0.86338	7.2557	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.73882	0.86338	NaN	1	0	Median	0.807	0.76284	NaN	1	1	Median	0.86494	0.86654	NaN	1	0	Median	176960000	90639000	86319000	0	0	0	18311000	9886700	8424400	65558000	36064000	29494000	93089000	44688000	48401000	16582	3523	15720	100532;100533;100534;100535	135657;135658;135659;135660;135661;135662;135663	135663			7	
FQIINNTEGDWWEAR	0	Unmodified	1877.8697	0.86966111	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	86.733	86.667	2	5.1412E-07	77246	160511_QHF_FH_JSI11i_3	132.32	118.66			1.5042	1.4863	8.2876	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4869	1.4017	NaN	1	1	Median	1.5216	1.576	NaN	1	1	Median	42151000	17210000	24941000	0	0	0	0	0	0	17090000	5918600	11172000	25061000	11291000	13769000	16583	884	15721	100536;100537;100538	135664;135665;135666	135664			3	
FQILNDEIITILDK	1	Unmodified	1673.924	0.9239881	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.33	0.471	2	1									1	1	1	102.24	102.15	2	0.00013957	89638	160511_QHF_FH_JSI11i_2	117.93	102.3			0.95899	1.0128	49.279	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52533	0.61879	NaN	1	0	Median	1.6487	1.658	NaN	1	0	Median	0.95899	1.0128	NaN	1	0	Median	199900000	87355000	112550000	0	0	0	46518000	27884000	18633000	117430000	42942000	74488000	35954000	16528000	19426000	16584	3229	15722	100539;100540;100541	135667	135667			1	
FQILNSSEGDWWEAR	0	Unmodified	1836.8431	0.84311201	845	P06241	FYN	Tyrosine-protein kinase Fyn	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	89.477	89.22	2	0.00011643	77397	160511_QHF_FH_JSI12i_3	98.902	85.239			1.2624	1.2418	15.27	4	1	Median	1.5566	1.3642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1278	1.0971	19.278	2	1	Median	1.1916	1.2265	NaN	1	0	Median	118280000	53885000	64392000	18387000	8514000	9873200	0	0	0	62739000	27463000	35276000	37150000	17907000	19243000	16585	845	15723	100542;100543;100544;100545	135668;135669;135670;135671;135672	135672			5	
FQIPPNAELK	1	Unmodified	1155.6288	0.62880913	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.61	0.488	9	14								3	6	5	9	58.349	57.534	2	0.0003122	49969	160511_QHF_FH_JSI12i_2	90.629	58.408			1.0032	1.0412	40.782	19	10	Median	1.4462	1.2431	25.063	2	0	Median	0.54425	0.63051	29.759	5	3	Median	1.0675	1.0365	50.306	5	3	Median	1.0032	1.1241	22.333	7	4	Median	2866000000	1502900000	1363200000	325640000	120950000	204690000	750210000	465020000	285190000	972570000	498860000	473720000	817610000	418050000	399560000	16586	2193	15724	100546;100547;100548;100549;100550;100551;100552;100553;100554;100555;100556;100557;100558;100559;100560;100561;100562;100563;100564;100565;100566;100567;100568	135673;135674;135675;135676;135677;135678;135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692;135693;135694;135695;135696;135697;135698;135699;135700	135680			27	
FQISNNGQVPCHFSFIPK	1	Unmodified	2119.0309	0.030929558	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		77.497	76.798	3	6.9856E-05	68468	160511_QHF_FH_JSI11i_3	65.265	59.143			0.96715	1.0052	71.919	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4817	1.6714	NaN	1	0	Median	0.63127	0.60447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65240000	35875000	29364000	0	0	0	23091000	8614400	14477000	42148000	27261000	14887000	0	0	0	16587	2179	15725	100569;100570	135701;135702;135703	135701			3	
FQKQALEASNR	1	Acetyl (K)	1332.6786	0.67861287	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		42.865	32.729	2	0.047776	19650	160513_QHF_FH_JSI11Kac_4	43.297	29.705			0.3343	0.32852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3343	0.32852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9151900	7103800	2048100	0	0	0	0	0	0	9151900	7103800	2048100	0	0	0	16588	1085	15726	100571	135704	135704			1	
FQLLVQQVALGTMMHCQTLK	1	Unmodified	2345.2058	0.20579916	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	3	3	4	3	96.852	94.236	3	2.8496E-105	46467	160513_QHF_FH_JSI10Kac_6	242.98	220.97			0.97719	1.0395	47.386	13	10	Median	1.22	0.97777	40.242	3	3	Median	0.88885	1.0395	28.434	3	2	Median	0.94725	0.93088	57.054	4	3	Median	1.9953	2.1157	45.933	3	2	Median	1222900000	600150000	622750000	129310000	74310000	54996000	406790000	224640000	182150000	336030000	174220000	161810000	350760000	126970000	223790000	16589	1568	15727	100572;100573;100574;100575;100576;100577;100578;100579;100580;100581;100582;100583;100584	135705;135706;135707;135708;135709;135710;135711;135712;135713;135714;135715;135716;135717;135718;135719;135720	135720			16	
FQLQATTK	1	Unmodified	935.50763	0.50763136	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	30.937	30.058	2	0.0013898	25452	160511_QHF_FH_JSI12i_2	85.064	52.172			1.3966	1.5281	16.188	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2707	1.5281	NaN	1	1	Median	1.3966	1.4227	NaN	1	1	Median	1.72	1.9382	NaN	1	1	Median	505050000	286450000	218590000	0	0	0	119500000	72436000	47067000	229860000	139540000	90319000	155680000	74477000	81207000	16590	1388	15728	100585;100586;100587;100588;100589	135721;135722;135723;135724;135725	135722			5	
FQLQLLR	0	Unmodified	916.54944	0.54943659	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	71.025	70.285	2	0.013061	60979	160511_QHF_FH_JSI12i_3	68.398	8.7892			0.83325	0.87402	17.266	6	0	Median	NaN	NaN	NaN	0	0	Median	0.64099	0.75268	25.566	2	0	Median	0.94394	0.88182	5.6842	2	0	Median	0.87809	0.93286	17.586	2	0	Median	151700000	85604000	66096000	0	0	0	44429000	27391000	17038000	48019000	26511000	21508000	59252000	31702000	27549000	16591	5222	15729	100590;100591;100592;100593;100594;100595	135726;135727;135728;135729	135729			4	
FQLQYMGHYLIR	0	Unmodified	1567.797	0.79695386	3454	Q8IY21;Q5H9U9	DDX60;DDX60L	Probable ATP-dependent RNA helicase DDX60;Probable ATP-dependent RNA helicase DDX60-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	79.668	71.385	3	0.0001752	39856	160513_QHF_FH_JSI10Kac_6	79.286	66.454			0.8806	0.84565	7.2477	4	1	Median	0.92308	0.79862	NaN	1	0	Median	0.69158	0.82914	NaN	1	0	Median	0.89721	0.86249	NaN	1	0	Median	0.8643	0.94545	NaN	1	1	Median	215220000	131080000	84140000	48073000	24063000	24010000	141500000	92211000	49291000	10877000	6096500	4780900	14769000	8711100	6058200	16592	3454	15730	100596;100597;100598;100599	135730;135731;135732;135733	135733			4	
FQLSNSGPNSTIK	1	Unmodified	1391.7045	0.70449327	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	42.889	42.085	2	9.0761E-53	37126	160511_QHF_FH_JSI11i_3	215.5	215.5			0.8499	0.96036	20.822	7	1	Median	1.0763	0.93358	NaN	1	0	Median	0.75947	0.90846	18.769	2	1	Median	0.97324	0.94463	35.748	2	0	Median	1.0346	1.1177	21.453	2	0	Median	791240000	388400000	402840000	106130000	50362000	55764000	119350000	66998000	52348000	268110000	135130000	132980000	297660000	135910000	161740000	16593	6	15731	100600;100601;100602;100603;100604;100605;100606	135734;135735;135736;135737;135738;135739;135740;135741;135742;135743;135744;135745;135746;135747;135748	135736			15	
FQLTFPLR	0	Unmodified	1020.5757	0.57565135	2714	Q15818	NPTX1	Neuronal pentraxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	85.192	84.521	2	0.00032001	75302	160511_QHF_FH_JSI11i_3	112.17	81.453			0.94914	0.90799	11.474	8	1	Median	1.2252	1.0384	19.664	2	0	Median	0.74593	0.89542	2.6522	2	1	Median	1.0253	1.0081	4.1381	2	0	Median	0.81983	0.86403	5.6571	2	0	Median	251880000	125610000	126270000	59327000	26089000	33238000	48598000	27836000	20763000	66212000	33203000	33008000	77744000	38483000	39260000	16594	2714	15732	100607;100608;100609;100610;100611;100612;100613;100614	135749;135750;135751;135752;135753;135754;135755;135756;135757;135758	135750			10	
FQLTSDEMSLLR	0	Unmodified	1438.7126	0.71261511	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.502	82.899	2	0.048547	72876	160511_QHF_FH_JSI11i_2	44.309	19.092			0.6716	0.6583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6716	0.6583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13343000	9726300	3616300	0	0	0	0	0	0	13343000	9726300	3616300	0	0	0	16595	5541	15733	100615	135759	135759			1	
FQMAYSNLLR	0	Unmodified	1241.6227	0.62267789	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	3	4	3	3	74.289	70.384	2	8.9844E-11	62165	160511_QHF_FH_JSI12i_3	141.48	114.88			1.0364	0.99917	17.486	13	0	Median	1.1643	0.99917	22.977	3	0	Median	0.78194	0.9355	22.091	4	0	Linear	1.0364	0.99359	11.825	3	0	Median	0.93578	0.98147	13.155	3	0	Median	4550600000	2250800000	2299800000	766550000	338390000	428170000	1346400000	727970000	618400000	1289800000	646940000	642860000	1147800000	537510000	610330000	16596	1466	15734	100616;100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627;100628	135760;135761;135762;135763;135764;135765;135766;135767;135768;135769;135770;135771;135772;135773;135774;135775;135776;135777;135778;135779;135780;135781	135779			22	
FQMAYSNLLR	0	Oxidation (M)	1257.6176	0.61759251	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.2	5.65		1	1					3	3	1	2	4	1	60.925	52.431	2	0.002216	28930	160513_QHF_FH_JSI10Kac_6	72.325	54.461			0.85461	0.99795	32.617	6	1	Median	NaN	NaN	NaN	0	0	Median	0.84548	0.99795	4.6239	2	0	Median	1.2461	1.2307	50.327	3	1	Plateau	1.095	1.2007	NaN	1	0	Median	106920000	33096000	73826000	0	0	0	19692000	9862500	9829400	85873000	22395000	63478000	1356400	838330	518110	16597	1466	15734	100629;100630;100631;100632;100633;100634;100635;100636	135782;135783;135784;135785;135786;135787	135787		1135	6	
FQMHVLLNEMK	1	Unmodified	1388.6945	0.69446263	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	70.873	65.015	3	0.00036544	35196	160513_QHF_FH_JSI11Kac_6	63.727	55.422			0.99006	1.0318	7.776	6	1	Median	1.2244	1.0083	NaN	1	0	Median	0.9547	1.124	NaN	1	0	Median	1.071	1.0402	15.215	2	0	Median	0.98511	1.0318	1.1405	2	1	Median	287910000	134100000	153820000	16306000	5600000	10706000	48425000	23963000	24462000	84792000	35303000	49489000	138390000	69230000	69159000	16598	2168	15735	100637;100638;100639;100640;100641;100642	135788;135789;135790	135788			2	
FQMPDQGMTSADDFFQGTK	1	Unmodified	2149.9085	0.90849074	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	86.408	85.845	2;3	1.5922E-43	78191	160511_QHF_FH_JSI11i_1	211.13	197.54			1.0688	1.0516	12.944	16	5	Median	1.221	1.0341	11.269	4	0	Median	0.93136	1.1388	16.042	4	3	Median	1.127	0.92995	10.576	4	1	Linear	1.0736	1.1817	10.63	4	1	Median	699590000	359510000	340080000	109580000	58405000	51180000	188490000	102810000	85684000	211030000	113410000	97612000	190490000	84880000	105610000	16599	2739	15736	100643;100644;100645;100646;100647;100648;100649;100650;100651;100652;100653;100654;100655;100656;100657;100658	135791;135792;135793;135794;135795;135796;135797;135798;135799;135800;135801;135802;135803;135804;135805;135806;135807;135808;135809;135810;135811;135812;135813;135814;135815;135816;135817	135792			27	
FQMQVLPQCGHAVHEDAPDK	1	Unmodified	2306.0572	0.057220663	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			3									2	1	48.507	48.427	3;4	2.9819E-06	42787	160511_QHF_FH_JSI11i_3	81.665	73.861			0.95788	0.89504	10.163	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91928	0.84335	8.4115	2	0	Median	0.97673	0.97274	NaN	1	0	Median	264430000	154620000	109810000	0	0	0	0	0	0	187010000	110730000	76288000	77420000	43895000	33525000	16600	5650	15737	100659;100660;100661	135818;135819;135820;135821	135821			4	
FQNDRTEDEQFNDEK	1	Unmodified	1913.8028	0.80276334	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1								3	3	1	21.917	21.419	3	0.00033821	18351	160511_QHF_FH_JSI10i_2	64.52	49.365			0.94698	0.96434	48.762	3	3	Median	NaN	NaN	NaN	0	0	Median	0.66553	0.79942	NaN	1	1	Median	1.377	1.3927	51.975	2	2	Median	NaN	NaN	NaN	0	0	Median	74901000	34446000	40455000	0	0	0	26022000	16662000	9359600	48879000	17784000	31095000	0	0	0	16601	5561	15738	100662;100663;100664;100665;100666;100667;100668	135822;135823;135824;135825;135826;135827;135828	135828			7	
FQNIDFAEEVYTR	0	Unmodified	1630.7627	0.76273643	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								2	1	1	1	71.927	71.161	2	7.5959E-05	62765	160511_QHF_FH_JSI9i_2	164.04	136.3			1.0512	1.0374	9.8742	5	4	Median	1.1328	0.96806	0.76841	2	2	Median	1.0512	1.2216	NaN	1	0	Median	1.0102	1.0374	NaN	1	1	Median	1.0099	1.1076	NaN	1	1	Median	784480000	382590000	401880000	260810000	128330000	132480000	104250000	53597000	50653000	226790000	107550000	119240000	192630000	93123000	99508000	16602	5536	15739	100669;100670;100671;100672;100673	135829;135830;135831;135832;135833	135832			4	
FQNMLEFQTPELLR	0	Unmodified	1764.8869	0.88689108	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	96.517	96.21	2	0.00024211	82805	160511_QHF_FH_JSI12i_2	105.32	89.694			1.231	1.2263	17.02	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.75755	0.91676	NaN	1	1	Median	1.3543	1.2869	NaN	1	1	Median	0.9443	1.0592	NaN	1	1	Median	32616000	16622000	15994000	0	0	0	7980000	4847600	3132300	15499000	6060400	9438200	9137400	5714100	3423400	16603	4750	15740	100674;100675;100676	135834;135835;135836	135834			3	
FQNNSEDNVK	1	Unmodified	1193.5313	0.53127993	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.701	9.9123	2	0.014068	7395	160511_QHF_FH_JSI9i_1	53.089	43.402			1.3507	1.1041	NaN	1	1	Median	1.3507	1.1041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21943000	9651100	12291000	21943000	9651100	12291000	0	0	0	0	0	0	0	0	0	16604	3423	15741	100677	135837	135837			1	
FQNPQTEGVNAVEDEIK	1	Unmodified	1916.9116	0.91158551	2792	Q2M2I8	AAK1	AP2-associated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	63.132	62.498	2	1.4627E-07	56566	160511_QHF_FH_JSI10i_1	125.61	103.85			0.91384	0.84212	42.062	4	2	Median	0.87724	0.69966	NaN	1	0	Median	1.2735	1.4591	NaN	1	1	Median	0.58727	0.56092	NaN	1	1	Median	0.95196	1.0136	NaN	1	0	Median	96923000	49127000	47796000	25312000	12357000	12955000	26637000	10586000	16051000	21523000	14389000	7134000	23451000	11795000	11657000	16605	2792	15742	100678;100679;100680;100681;100682	135838;135839;135840;135841;135842;135843	135842			6	
FQNVADLHLYLYSAK	1	Unmodified	1780.9148	0.91482039	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		3	1	1	79.354	71.186	2;3	1.4965E-80	39717	160513_QHF_FH_JSI10Kac_6	220.19	183.34			0.74164	0.7724	24.507	3	2	Median	NaN	NaN	NaN	0	0	Median	0.63604	0.74957	NaN	1	0	Median	1.1952	1.1623	NaN	1	1	Median	0.74164	0.7724	NaN	1	1	Median	250760000	139100000	111660000	0	0	0	169620000	97571000	72044000	45290000	19516000	25774000	35857000	22010000	13847000	16606	1519	15743	100683;100684;100685;100686;100687	135844;135845;135846;135847;135848	135848			5	
FQNVNSVTIFVQSNQGEEETTR	0	Unmodified	2526.1987	0.19865941	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.33	69.429	3	1.1581E-08	59826	160511_QHF_FH_JSI12i_2	96.718	92.69			1.7065	1.0211	42.319	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.80377	1.0211	NaN	1	1	Median	0.86483	0.82744	NaN	1	1	Median	1.7065	1.8696	NaN	1	0	Median	48338000	27317000	21021000	0	0	0	11966000	8689700	3275900	15020000	9202100	5818000	21352000	9425600	11927000	16607	328	15744	100688;100689;100690	135849;135850;135851	135849			3	
FQPGETLTEILETPATSEQEAEHQR	0	Unmodified	2840.3464	0.34644586	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							3	4	4	1	91.342	90.977	3;4	2.5934E-76	80707	160511_QHF_FH_JSI11i_3	232.59	219.66			0.97599	0.98963	24.589	11	4	Median	1.2315	1.0824	18.252	3	2	Median	0.9955	1.2029	11.612	3	0	Plateau	0.94796	0.93942	38.818	4	2	Median	0.842	0.84342	NaN	1	0	Median	998420000	467730000	530690000	137830000	53301000	84533000	270690000	132230000	138470000	499380000	225440000	273930000	90510000	56759000	33752000	16608	1600	15745	100691;100692;100693;100694;100695;100696;100697;100698;100699;100700;100701;100702	135852;135853;135854;135855;135856;135857;135858;135859;135860;135861;135862;135863;135864;135865;135866;135867;135868;135869;135870;135871;135872	135853			21	
FQPGVLEAP	0	Unmodified	956.49673	0.49673232	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.887	65.284	2	0.0051786	59397	160511_QHF_FH_JSI12i_1	56.011	45.145			1.0458	1.0711	7.817	4	0	Median	1.3508	1.1294	NaN	1	0	Median	0.87506	1.0257	NaN	1	0	Median	1.1744	1.1184	NaN	1	0	Median	0.93129	0.95709	NaN	1	0	Median	163150000	82774000	80375000	38076000	16788000	21288000	37944000	22564000	15381000	39556000	17373000	22183000	47574000	26050000	21524000	16609	1289	15746	100703;100704;100705;100706	135873	135873			1	
FQPGYRS	0	Unmodified	853.40825	0.40825167	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			17.431	16.355	2	0.027666	13318	160511_QHF_FH_JSI10i_3	64.776	39.778			1.0595	1.2221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0595	1.2221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52656000	25168000	27488000	0	0	0	52656000	25168000	27488000	0	0	0	0	0	0	16610	1309	15747	100707	135874	135874			1	
FQPLFGDFAAEK	1	Unmodified	1368.6714	0.67140222	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	81.438	80.62	2	0.00010841	70889	160511_QHF_FH_JSI11i_2	103.22	75.917			0.8423	0.87312	25.057	6	6	Median	1.1774	1.0209	NaN	1	1	Median	0.57453	0.71126	NaN	1	1	Median	0.83677	0.8501	33.859	2	2	Median	0.84985	0.95145	34.265	2	2	Median	704500000	381370000	323130000	78850000	36380000	42471000	78068000	46141000	31927000	329800000	179960000	149850000	217780000	118890000	98888000	16611	2617	15748	100708;100709;100710;100711;100712;100713;100714	135875;135876;135877;135878;135879;135880;135881;135882	135880			8	
FQPLLDGLK	1	Unmodified	1029.5859	0.58588168	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	69.684	68.814	2	0.0002824	59179	160511_QHF_FH_JSI12i_2	87.476	60.222			0.19215	0.16741	NaN	1	1	Median	0.19215	0.16741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45595000	34878000	10717000	45595000	34878000	10717000	0	0	0	0	0	0	0	0	0	16612	432	15749	100715;100716;100717	135883;135884;135885	135883			3	
FQPPQVPDQAPAEAPTEK	1	Unmodified	1948.9531	0.95305639	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.881	55.73	3	0.035171	49431	160511_QHF_FH_JSI9i_1	24.422	21.034			1.3693	1.1366	NaN	1	0	Median	1.3693	1.1366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45630000	22523000	23107000	45630000	22523000	23107000	0	0	0	0	0	0	0	0	0	16613	305	15750	100718	135886	135886			1	
FQPQSPDFLDITNPK	1	Unmodified	1745.8625	0.86245047	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	4	5	2	80.665	80.084	2;3	0.00012078	71175	160511_QHF_FH_JSI10i_2	98.353	88.921			0.83371	0.83522	35.123	14	6	Median	0.73869	0.64234	22.104	3	1	Plateau	0.74872	0.88299	46.715	4	2	Median	0.93176	0.89317	41.04	5	3	Median	0.69561	0.7543	21.178	2	0	Median	501330000	272940000	228390000	71210000	40948000	30262000	151660000	84573000	67088000	211580000	111990000	99592000	66872000	35427000	31445000	16614	3902	15751	100719;100720;100721;100722;100723;100724;100725;100726;100727;100728;100729;100730;100731;100732	135887;135888;135889;135890;135891;135892;135893;135894;135895;135896;135897;135898;135899;135900;135901;135902;135903;135904	135903			18	
FQQGLLVDFLAFPQK	1	Unmodified	1749.9454	0.94539224	3145	Q6UVJ0	SASS6	Spindle assembly abnormal protein 6 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				65.631	64.71	3	0.036092	57031	160511_QHF_FH_JSI9i_2	24.935	17.344			0.51064	0.43987	NaN	1	0	Median	0.51064	0.43987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	354060000	187760000	166300000	354060000	187760000	166300000	0	0	0	0	0	0	0	0	0	16615	3145	15752	100733	135905	135905			1	
FQQGQQGR	0	Unmodified	947.45733	0.45732712	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.2617	4.92	2	0.016627	2921	160511_QHF_FH_JSI10i_1	47.75	2.7766			0.56091	0.57399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56091	0.57399	NaN	1	0	Median	26500000	15376000	11125000	0	0	0	0	0	0	0	0	0	26500000	15376000	11125000	16616	3720	15753	100734;100735	135906;135907	135907			2	
FQQILSWQQMDQNK	1	Unmodified	1792.8567	0.85665359	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.35	69.74	2	1.503E-05	61052	160511_QHF_FH_JSI11i_2	84.718	53.287			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16617	3150	15754	100736	135908	135908			1	
FQQQQGLR	0	Unmodified	1003.5199	0.51992738	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	12.791	12.389	2	0.0012167	9783	160511_QHF_FH_JSI12i_2	92.467	61.177			0.88602	1.0474	12.469	6	0	Median	1.2803	1.0879	NaN	1	0	Median	0.78936	0.95375	16.249	2	0	Median	0.84766	0.86648	NaN	1	0	Median	1.0077	1.0841	7.863	2	0	Median	1124900000	531060000	593830000	248250000	94414000	153830000	268160000	152190000	115970000	278530000	120560000	157970000	329960000	163900000	166060000	16618	241	15755	100737;100738;100739;100740;100741;100742	135909;135910;135911;135912;135913	135909			5	
FQQVPTDALANK	1	Unmodified	1330.6881	0.68811492	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	44.848	42.176	2	3.1354E-07	38062	160511_QHF_FH_JSI11i_1	183.72	155.98			0.70453	0.68307	23.444	5	3	Median	0.75662	0.62965	NaN	1	1	Median	0.60854	0.7129	NaN	1	1	Median	0.88355	0.85967	32.519	2	1	Median	0.56853	0.59988	NaN	1	0	Median	1283700000	703700000	579970000	328740000	190210000	138520000	360000000	212760000	147240000	377430000	197590000	179840000	217500000	103130000	114370000	16619	3132	15756	100743;100744;100745;100746;100747	135914;135915;135916;135917;135918;135919;135920;135921	135914			8	
FQRPGDPQSAQDK	1	Unmodified	1472.7008	0.70080487	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.91	5.02		4	5					1	1	5	3	3		15.078	12.848	2;3	0.0003673	10455	160511_QHF_FH_JSI10i_3	67.275	59.551			1.0496	0.9781	13.453	11	0	Median	1.1849	1.0078	19.464	5	0	Median	0.72469	0.9556	7.7561	3	0	Plateau	1.0924	1.0436	4.4331	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1194900000	575280000	619640000	725310000	337140000	388170000	379890000	195050000	184840000	89717000	43093000	46624000	0	0	0	16620	2689	15757	100748;100749;100750;100751;100752;100753;100754;100755;100756;100757;100758	135922;135923;135924;135925;135926;135927;135928;135929;135930	135924			9	
FQSDSSSYPTVDSNSLLGQSR	0	Unmodified	2274.04	0.040033499	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	62.825	62.236	2;3	3.0848E-70	56587	160511_QHF_FH_JSI12i_1	229.54	214.75			0.98087	0.98817	17.635	10	5	Median	1.0631	0.86924	35.12	2	1	Median	0.79112	0.9246	15.668	3	2	Median	1.1029	1.0736	10.919	3	2	Median	0.90266	0.93251	4.1207	2	0	Median	627330000	305050000	322280000	130720000	69117000	61605000	141660000	64627000	77032000	216590000	92636000	123960000	138360000	78672000	59687000	16621	5474	15758	100759;100760;100761;100762;100763;100764;100765;100766;100767;100768	135931;135932;135933;135934;135935;135936;135937;135938;135939;135940;135941;135942;135943;135944;135945;135946;135947;135948	135935			18	
FQSGDFHVINGVLR	0	Unmodified	1587.8158	0.81577505	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.33		9	8						4	6	5	6	4	68.513	66.072	2;3	5.5059E-22	59020	160511_QHF_FH_JSI11i_3	200.82	184.56			0.98489	0.97208	16.573	20	7	Median	1.3099	1.1308	17.331	6	2	Median	0.81444	0.94603	8.5487	5	0	Median	0.99324	0.9298	20.861	5	3	Median	1.0403	1.0948	15.308	4	2	Median	4009300000	1921000000	2088400000	790070000	345170000	444890000	1015600000	529510000	486090000	1200700000	528900000	671790000	1003000000	517390000	485600000	16622	1844	15759	100769;100770;100771;100772;100773;100774;100775;100776;100777;100778;100779;100780;100781;100782;100783;100784;100785;100786;100787;100788;100789	135949;135950;135951;135952;135953;135954;135955;135956;135957;135958;135959;135960;135961;135962;135963;135964;135965;135966;135967;135968;135969;135970;135971;135972;135973;135974;135975;135976;135977;135978;135979;135980;135981;135982	135950			34	
FQSISTEFLALMK	1	Unmodified	1513.7851	0.78505177	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	2	1	1	92.185	83.857	2	3.5276E-09	46859	160513_QHF_FH_JSI11Kac_6	150.06	109.47			0.83828	1.1482	24.908	4	1	Linear	1.2319	1.0514	NaN	1	0	Median	0.94543	1.0872	NaN	1	0	Median	0.66872	0.64274	NaN	1	1	Median	0.74327	0.7913	NaN	1	0	Median	549990000	304900000	245080000	147380000	71633000	75746000	185850000	103390000	82460000	116310000	76632000	39679000	100450000	53245000	47200000	16623	2517	15760	100790;100791;100792;100793;100794	135983;135984;135985;135986;135987;135988	135983			6	
FQSIVIGCALEDQK	1	Unmodified	1606.8025	0.80249275	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.055	68.759	3	0.050144	59169	160511_QHF_FH_JSI12i_2	26.825	17.025			1.2111	1.3614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2111	1.3614	NaN	1	1	Median	30118000	11099000	19019000	0	0	0	0	0	0	0	0	0	30118000	11099000	19019000	16624	731	15761	100795	135989	135989			1	
FQSIVIGCALEDQKK	2	Unmodified	1734.8975	0.89745577	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	59.839	59.391	2;3	5.0398E-05	52603	160511_QHF_FH_JSI11i_3	87.388	76.118			0.8318	0.78489	21.187	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99455	1.1694	NaN	1	0	Median	0.8318	0.78489	NaN	1	0	Median	0.82049	0.84605	NaN	1	0	Median	520950000	289740000	231200000	0	0	0	54051000	26109000	27942000	284800000	154900000	129890000	182100000	108730000	73369000	16625	731	15762	100796;100797;100798;100799	135990;135991;135992;135993;135994;135995	135990			6	
FQSKYEPR	1	Acetyl (K)	1095.5349	0.53490874	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		35.355	25.757	2	0.035854	15013	160513_QHF_FH_JSI11Kac_5	53.968	39.433			0.26334	0.26161	91.78	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0668	1.2612	18.773	2	0	Median	0.26334	0.26161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31177000	22249000	8928000	0	0	0	6404300	3173600	3230700	24772000	19075000	5697300	0	0	0	16626	1034	15763	100800;100801;100802	135996;135997	135997			2	
FQSLGVAFYR	0	Unmodified	1186.6135	0.61349341	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	68.412	64.933	2	1.6437E-24	34366	160513_QHF_FH_JSI9Kac_6	179.8	132.74			0.96925	1.0173	14.652	12	1	Median	1.2672	1.0728	16.604	3	1	Median	0.83654	0.99423	3.8775	3	0	Plateau	0.97349	0.91208	10.768	3	0	Median	1.0988	1.1011	21.18	3	0	Plateau	6803300000	3402000000	3401200000	1187600000	562050000	625510000	2358700000	1296400000	1062300000	1663300000	785090000	878230000	1593700000	758510000	835210000	16627	1728	15764	100803;100804;100805;100806;100807;100808;100809;100810;100811;100812;100813;100814	135998;135999;136000;136001;136002;136003;136004;136005;136006;136007;136008;136009;136010;136011;136012;136013;136014;136015	136010			18	
FQSLNADINK	1	Unmodified	1148.5826	0.58258722	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.42	4	4	3				2			3	4	3	3	39.089	36.613	2	7.1129E-10	31286	160511_QHF_FH_JSI12i_2	138.08	109.16			0.98325	0.98332	31.017	12	3	Median	1.1001	0.92311	20.183	3	1	Plateau	0.89935	1.0729	33.092	3	1	Plateau	1.0815	1.0922	8.9241	3	0	Median	0.81277	0.85694	38.123	3	1	Median	1856000000	954120000	901840000	301270000	165720000	135550000	510600000	256610000	253990000	606150000	290470000	315680000	437940000	241320000	196620000	16628	1363	15765	100815;100816;100817;100818;100819;100820;100821;100822;100823;100824;100825;100826;100827	136016;136017;136018;136019;136020;136021;136022;136023;136024;136025;136026;136027;136028;136029;136030;136031;136032;136033;136034;136035	136019			20	
FQSLNADINKR	1	Unmodified	1304.6837	0.68369824	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			30.401	29.058	3	0.042394	24103	160511_QHF_FH_JSI10i_3	27.862	11.608			0.1719	0.19104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1719	0.19104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39786000	31809000	7977300	0	0	0	39786000	31809000	7977300	0	0	0	0	0	0	16629	1363	15766	100828	136036	136036			1	
FQSLSFPHTK	1	Unmodified	1190.6084	0.60840804	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	41.601	41.391	3	0.017541	35321	160511_QHF_FH_JSI12i_3	36.954	27.999			7.264	7.3254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.264	7.3254	NaN	1	1	Median	163770000	27603000	136160000	0	0	0	0	0	0	0	0	0	163770000	27603000	136160000	16630	1817	15767	100829	136037	136037			1	
FQSPYEEQLEQQR	0	Unmodified	1680.7744	0.77436375	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.564	47.166	2	0.0046154	40344	160511_QHF_FH_JSI12i_2	54.608	38.978			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16631	138	15768	100830	136038	136038			1	
FQSQPYR	0	Unmodified	924.44537	0.44536545	730	O95801	TTC4	Tetratricopeptide repeat protein 4	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	13.171	12.64	2	0.015357	10030	160511_QHF_FH_JSI12i_2	64.776	38.668			0.90191	0.94317	9.1844	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90191	1.1045	NaN	1	0	Median	0.94633	0.94092	NaN	1	0	Median	0.85445	0.94317	NaN	1	0	Median	95924000	53435000	42489000	0	0	0	33105000	17442000	15662000	32078000	17069000	15009000	30740000	18924000	11817000	16632	730	15769	100831;100832;100833	136039	136039			1	
FQSSHHPTDITSLDQYVER	0	Unmodified	2259.0556	0.055623984	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.69		14	13						8	8	10	8	9	59.012	56.24	2;3;4	3.9673E-71	29338	160513_QHF_FH_JSI9Kac_6	209.67	167.04			1.0868	1.1072	22.058	34	7	Median	1.2823	1.0916	34.654	7	2	Median	0.95649	1.1331	22.313	10	2	Median	1.0023	0.94357	8.9829	8	0	Median	1.102	1.1763	12.558	9	3	Median	9288000000	4416500000	4871600000	997980000	483950000	514030000	2158700000	1116200000	1042500000	2762600000	1250600000	1512000000	3368800000	1565700000	1803100000	16633	1057	15770	100834;100835;100836;100837;100838;100839;100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858;100859;100860;100861;100862;100863;100864;100865;100866;100867;100868	136040;136041;136042;136043;136044;136045;136046;136047;136048;136049;136050;136051;136052;136053;136054;136055;136056;136057;136058;136059;136060;136061;136062;136063;136064;136065;136066;136067;136068;136069;136070;136071;136072;136073;136074;136075;136076;136077;136078;136079;136080;136081;136082;136083;136084;136085;136086;136087;136088;136089;136090;136091;136092;136093;136094;136095;136096;136097;136098;136099;136100	136081			59	
FQSVESGANNVVFIR	0	Unmodified	1665.8475	0.84746911	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.23	63.327	2	4.4875E-30	55129	160511_QHF_FH_JSI11i_2	193.23	164.27			0.78591	0.80255	9.3216	4	1	Median	0.82746	0.73023	NaN	1	0	Median	0.64907	0.76957	NaN	1	0	Median	0.87329	0.90243	NaN	1	0	Median	0.74645	0.83695	NaN	1	1	Median	256610000	150580000	106020000	46086000	27011000	19075000	49808000	31636000	18173000	91090000	53698000	37392000	69620000	38238000	31382000	16634	5107	15771	100869;100870;100871;100872	136101;136102;136103;136104;136105;136106;136107	136105			7	
FQSVPAQPGQTSPLLQYFGILLDQGQLNK	1	Unmodified	3186.6713	0.67134923	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.49		6	5						6	2	3	7	5	101.56	98.428	3;4	6.8188E-85	51487	160513_QHF_FH_JSI11Kac_6	213.05	196.25			0.93363	1.0354	12.404	16	2	Median	1.2934	1.1083	10.689	2	0	Median	0.90634	1.083	4.4021	3	0	Median	1.1243	1.0625	17.043	6	2	Median	0.93217	0.94698	8.9345	5	0	Median	6091100000	3095200000	2996000000	806310000	354530000	451780000	1081900000	579540000	502360000	2916300000	1475500000	1440700000	1286600000	685560000	601080000	16635	2155	15772	100873;100874;100875;100876;100877;100878;100879;100880;100881;100882;100883;100884;100885;100886;100887;100888;100889	136108;136109;136110;136111;136112;136113;136114;136115;136116;136117;136118;136119;136120;136121;136122;136123;136124;136125;136126;136127;136128;136129;136130;136131;136132;136133	136115			26	
FQTEIQTVNK	1	Unmodified	1206.6245	0.62445203	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.21	4	5	1				3			4	3	3	3	36.675	33.687	2	1.3538E-09	28857	160511_QHF_FH_JSI11i_2	134.68	105.53			1.3606	1.4945	37.56	13	4	Median	1.6279	1.4064	43.037	4	3	Median	1.3867	1.5977	27.886	3	0	Plateau	1.172	1.1579	47.261	3	0	Median	1.8813	2.0012	44.169	3	1	Plateau	1550200000	605660000	944590000	417400000	161410000	255990000	431290000	175870000	255420000	405850000	152060000	253790000	295710000	116320000	179390000	16636	1064	15773	100890;100891;100892;100893;100894;100895;100896;100897;100898;100899;100900;100901;100902	136134;136135;136136;136137;136138;136139;136140;136141;136142;136143;136144;136145;136146;136147;136148;136149	136146			16	
FQTMEEK	1	Unmodified	911.40587	0.4058684	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	4	2	2	16.318	14.842	2	0.0023127	12164	160511_QHF_FH_JSI12i_2	111.82	78.077			0.67378	0.72822	70.218	11	0	Median	1.0942	1.131	28.116	3	0	Plateau	0.67303	0.8161	114.76	4	0	Median	0.65561	0.66196	0.24548	2	0	Median	0.60273	0.65837	14.26	2	0	Median	10134000000	5040200000	5093400000	2107100000	789290000	1317800000	2875700000	1398400000	1477300000	2554400000	1448100000	1106200000	2596400000	1404400000	1192000000	16637	1484	15774	100903;100904;100905;100906;100907;100908;100909;100910;100911;100912;100913	136150;136151;136152;136153;136154;136155;136156;136157;136158;136159;136160;136161;136162;136163;136164;136165	136152			16	
FQTMEEK	1	Oxidation (M)	927.40078	0.40078303	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	3	1	1	9.4481	7.6718	2	0.02694	6595	160511_QHF_FH_JSI12i_1	60.788	43.861			0.98705	1.1561	8.3455	7	0	Median	1.4732	1.2521	7.0834	2	0	Median	0.9739	1.1561	5.6251	3	0	Plateau	1.1078	1.0564	NaN	1	0	Median	0.98705	1.0532	NaN	1	0	Median	1623800000	785700000	838120000	424180000	183040000	241130000	537000000	270990000	266010000	313300000	141110000	172190000	349360000	190560000	158790000	16638	1484	15774	100914;100915;100916;100917;100918;100919;100920	136166;136167;136168;136169	136166			4	
FQTMEEKK	2	Unmodified	1039.5008	0.50083142	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	3.1		10	5					1		2	3	6	5	10.641	10.371	2;3	0.0020171	7983	160511_QHF_FH_JSI12i_2	112.84	47.804			1.0407	1.0355	93.165	14	14	Median	5.725	5.0762	NaN	1	1	Median	0.53792	0.66007	72.199	3	3	Plateau	0.94568	0.92705	107.38	5	5	Median	2.0769	2.1215	90.043	5	5	Median	1386100000	674170000	711900000	48412000	8706400	39706000	301880000	176360000	125510000	630740000	313630000	317110000	405050000	175470000	229570000	16639	1484	15775	100921;100922;100923;100924;100925;100926;100927;100928;100929;100930;100931;100932;100933;100934;100935;100936	136170;136171;136172;136173;136174;136175;136176;136177;136178;136179;136180;136181;136182;136183;136184;136185	136173			16	
FQTMEEKK	2	Acetyl (K)	1081.5114	0.51139611	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		31.618	22.496	2	0.026291	14236	160513_QHF_FH_JSI11Kac_4	67.981	43.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4368800	4368800	0	0	0	0	0	0	0	4368800	4368800	0	0	0	0	16640	1484	15775	100937	136186	136186	1489		1	
FQTMSDQIIGR	0	Unmodified	1294.634	0.63397086	537	O75506	HSBP1	Heat shock factor-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.251	50.272	2	3.6071E-05	43422	160511_QHF_FH_JSI11i_2	97.813	57.769			0.97305	0.98138	11.317	4	1	Median	1.038	0.88354	NaN	1	1	Median	0.92453	1.1387	NaN	1	0	Median	1.0241	1.0355	NaN	1	0	Median	0.82608	0.93011	NaN	1	0	Median	550440000	287100000	263340000	112520000	55332000	57184000	113940000	66563000	47378000	173710000	85739000	87974000	150270000	79463000	70808000	16641	537	15776	100938;100939;100940;100941	136187;136188;136189;136190;136191;136192	136190			6	
FQVATDALK	1	Unmodified	991.53385	0.53384611	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	46.832	46.04	2	0.00072962	39479	160511_QHF_FH_JSI11i_2	86.136	55.523			0.87758	0.96081	27.765	9	2	Median	1.4597	1.2562	0.87046	2	0	Median	0.72355	0.86939	9.4065	2	0	Median	1.0551	1.0299	46.305	3	2	Median	0.84579	0.9004	9.1836	2	0	Median	629460000	330700000	298760000	101600000	43255000	58349000	153690000	90176000	63513000	240410000	122080000	118330000	133760000	75190000	58566000	16642	2587	15777	100942;100943;100944;100945;100946;100947;100948;100949;100950	136193;136194;136195;136196;136197;136198;136199;136200;136201;136202;136203;136204;136205;136206	136203			14	
FQVDPSGEIVELAK	1	Unmodified	1530.793	0.79297392	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	81.233	80.763	2	3.0553E-10	73300	160511_QHF_FH_JSI10i_1	112.5	82.755			0.9957	0.9227	9.7719	4	0	Median	1.1291	0.92179	NaN	1	0	Median	0.7921	0.9236	NaN	1	0	Median	0.9229	0.90928	NaN	1	0	Median	1.0742	1.1158	NaN	1	0	Median	620890000	324160000	296730000	126610000	64020000	62588000	139670000	58570000	81103000	203370000	133680000	69692000	151230000	67888000	83345000	16643	4834	15778	100951;100952;100953;100954;100955	136207;136208;136209;136210;136211;136212	136210			6	
FQVLLAELK	1	Unmodified	1059.6328	0.63283187	4624	Q9H0A8	COMMD4	COMM domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.745	80.969	2	0.0018761	71125	160511_QHF_FH_JSI11i_2	76.1	56.396			0.32836	0.33067	41.003	3	3	Median	NaN	NaN	NaN	0	0	Median	0.34384	0.40584	NaN	1	1	Median	0.32836	0.33067	NaN	1	1	Median	0.16814	0.18417	NaN	1	1	Median	69706000	59301000	10405000	8384700	8384700	0	17259000	14796000	2463900	24636000	18868000	5768900	19425000	17253000	2171900	16644	4624	15779	100956;100957;100958;100959	136213;136214;136215;136216	136215			4	
FQVVINGR	0	Unmodified	931.52395	0.52395013	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	41.538	41.538	2	0.0080787	36515	160511_QHF_FH_JSI11i_3	57.559	52.704			1.1808	1.1022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1808	1.1022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67038000	31329000	35709000	0	0	0	0	0	0	67038000	31329000	35709000	0	0	0	16645	1857	15780	100960;100961;100962	136217;136218;136219	136217			3	
FQVWDLGGQTSIRPYWR	0	Unmodified	2108.0592	0.059193219	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.239	78.613	3	0.0044516	43872	160513_QHF_FH_JSI10Kac_6	49.049	24.511			1.0256	1.1961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0256	1.1961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61491000	29778000	31713000	0	0	0	61491000	29778000	31713000	0	0	0	0	0	0	16646	1498	15781	100963	136220	136220			1	
FQVYQLR	0	Unmodified	952.51305	0.51305109	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		49.119	49.119	2	0.026832	43470	160511_QHF_FH_JSI11i_3	46.766	23.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16647	708	15782	100964	136221	136221			1	
FQWDLNAWTK	1	Unmodified	1307.6299	0.62987176	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		5	2						2	1	3	3	2	87.223	86.12	2	6.3718E-05	76637	160511_QHF_FH_JSI11i_2	103.26	97.773			0.94788	1.0154	23.137	8	4	Median	1.1451	1.0078	NaN	1	0	Median	0.87131	1.0474	3.313	2	1	Median	0.98863	0.93383	42.904	3	2	Median	0.96597	1.0146	4.6447	2	1	Median	915650000	451740000	463900000	128640000	59768000	68870000	200930000	113280000	87648000	341690000	150520000	191170000	244380000	128170000	116210000	16648	2380	15783	100965;100966;100967;100968;100969;100970;100971;100972;100973	136222;136223;136224;136225;136226;136227;136228;136229;136230;136231;136232;136233;136234;136235;136236	136231			15	
FQWDMAK	1	Unmodified	924.41637	0.41637351	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	51.976	51	2	0.010327	43684	160511_QHF_FH_JSI12i_2	75.311	44.592			0.78416	0.87977	31.424	4	1	Median	0.58452	0.50193	NaN	1	1	Median	0.69432	0.8418	NaN	1	0	Median	0.91832	0.91946	NaN	1	0	Median	0.88564	1.0164	NaN	1	0	Median	213680000	121910000	91770000	34259000	23224000	11034000	57640000	35275000	22364000	67818000	34269000	33548000	53968000	29146000	24823000	16649	1190	15784	100974;100975;100976;100977	136237;136238	136237			2	
FQYECGNYSGAAEYLYFFR	0	Unmodified	2384.0208	0.020818382	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	91.653	82.211	2	7.3153E-86	44318	160513_QHF_FH_JSI12Kac_6	217.37	209.46			1.1004	1.2107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1004	1.2107	NaN	1	0	Median	14549000	5067100	9482100	0	0	0	0	0	0	0	0	0	14549000	5067100	9482100	16650	1909	15785	100978	136239	136239			1	
FRADNLNK	1	Unmodified	976.50903	0.50902834	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			14.488	13.575	2;3	4.3712E-05	10845	160511_QHF_FH_JSI10i_3	119.27	86.434			1.1128	1.0668	5.9181	4	0	Median	1.3016	1.0554	6.6114	2	0	Median	0.9395	1.0841	7.3574	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1605100000	792480000	812570000	925260000	458140000	467120000	679800000	334340000	345450000	0	0	0	0	0	0	16651	1667	15786	100979;100980;100981;100982	136240;136241;136242;136243;136244;136245;136246;136247	136241			8	
FRDASLVFK	1	Unmodified	1081.592	0.59202969	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	2	2	1	44.386	43.369	2;3	0.00015932	37783	160511_QHF_FH_JSI11i_3	89.827	79.54			0.7465	0.71307	90.473	8	8	Median	2.1616	1.731	80.059	3	3	Plateau	1.2068	1.3803	96.369	2	2	Median	1.0949	1.0462	111.91	2	2	Median	0.24322	0.23127	NaN	1	1	Median	1218200000	552350000	665810000	404980000	161080000	243900000	289580000	154140000	135440000	492380000	216330000	276050000	31228000	20803000	10425000	16652	1945	15787	100983;100984;100985;100986;100987;100988;100989;100990	136248;136249;136250;136251;136252;136253;136254;136255	136249			8	
FREALGDAQQSVR	0	Unmodified	1475.7481	0.74808942	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			27.88	26.531	2;3	0.00062365	21462	160511_QHF_FH_JSI9i_3	71.031	49.473			1.52	1.2306	180.36	2	2	Median	1.52	1.2306	180.36	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111240000	33624000	77616000	96718000	33624000	63094000	14522000	0	14522000	0	0	0	0	0	0	16653	4294	15788	100991;100992;100993	136256;136257;136258	136257			3	
FREDHPDLIQNAK	1	Unmodified	1581.79	0.78995423	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	29.551	29.197	3;4	4.9236E-05	25143	160511_QHF_FH_JSI11i_3	89.231	84.053			0.78572	0.73416	63.326	4	2	Median	NaN	NaN	NaN	0	0	Median	1.6154	1.9164	NaN	1	1	Median	0.78572	0.73416	10.266	2	0	Median	0.3979	0.41992	NaN	1	1	Median	234640000	123350000	111290000	0	0	0	18804000	5768800	13036000	194180000	100540000	93640000	21653000	17036000	4616600	16654	1117	15789	100994;100995;100996;100997;100998	136259;136260;136261;136262;136263;136264	136261			6	
FRENLIYTYIGPVLVSVNPYR	0	Unmodified	2512.3478	0.34783025	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			93.745	88.025	3	8.9277E-15	50510	160513_QHF_FH_JSI10Kac_6	119.01	98.384			1.1088	1.2986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1088	1.2986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70066000	31109000	38957000	0	0	0	70066000	31109000	38957000	0	0	0	0	0	0	16655	100	15790	100999;101000	136265;136266;136267	136265			3	
FRGDAGLGK	1	Unmodified	919.48756	0.48756462	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			4							2	1	1		13.884	13.182	2;3	0.00019735	10429	160511_QHF_FH_JSI9i_3	69.276	39.09			0.96781	0.83935	19.036	4	0	Median	1.1232	0.91737	14.665	2	0	Median	0.56397	0.64102	NaN	1	0	Median	0.9041	0.85187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	717730000	416420000	301310000	360090000	209500000	150590000	160010000	102340000	57678000	197630000	104580000	93044000	0	0	0	16656	2752	15791	101001;101002;101003;101004	136268;136269;136270	136270			3	
FRGPFTDVVTTNLK	1	Unmodified	1593.8515	0.85149185	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.952	67.464	3	0.0048288	55308	160511_QHF_FH_JSI9i_3	47.201	42.106			0.87126	0.71314	NaN	1	0	Median	0.87126	0.71314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27349000	13127000	14222000	27349000	13127000	14222000	0	0	0	0	0	0	0	0	0	16657	671	15792	101005;101006	136271;136272;136273	136272			3	
FRGTEPEPR	0	Unmodified	1087.5411	0.54105675	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			10.558	9.8468	2;3	0.0067368	7456	160511_QHF_FH_JSI9i_3	36.671	30.89			1.2909	1.042	6.262	2	0	Median	1.2909	1.042	6.262	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186510000	74356000	112150000	186510000	74356000	112150000	0	0	0	0	0	0	0	0	0	16658	1256	15793	101007;101008;101009	136274;136275;136276;136277	136276			4	
FRIDELEPR	0	Unmodified	1173.6142	0.6142217	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							3	4	4	4	57.16	56.401	2;3	1.8078E-07	49723	160511_QHF_FH_JSI9i_2	137.98	97.387			0.88417	0.85175	21.267	14	1	Median	1.0721	0.89637	21.637	3	0	Median	0.79529	0.93637	32.57	4	1	Median	0.88417	0.98199	11.958	4	0	Linear	0.82528	0.84703	11.728	3	0	Plateau	2794700000	1456700000	1337900000	328880000	166270000	162620000	765010000	439990000	325020000	1134500000	554170000	580320000	566270000	296300000	269980000	16659	2569	15794	101010;101011;101012;101013;101014;101015;101016;101017;101018;101019;101020;101021;101022;101023;101024	136278;136279;136280;136281;136282;136283;136284;136285;136286;136287;136288;136289;136290;136291;136292;136293;136294;136295;136296;136297;136298;136299;136300;136301;136302;136303;136304;136305;136306;136307;136308;136309;136310	136292			33	
FRLDIFK	1	Unmodified	937.53854	0.53853756	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	3	3	1	2	69.317	68.279	3	0.0023864	36401	160513_QHF_FH_JSI10Kac_6	75.109	25.07			0.9218	0.82942	5.2243	6	2	Median	1.089	0.87428	6.2233	3	2	Plateau	0.7527	0.84725	NaN	1	0	Median	0.92918	0.86364	NaN	1	0	Median	0.77626	0.78162	NaN	1	0	Median	784450000	433410000	351040000	250220000	131900000	118320000	142120000	82163000	59961000	219170000	105490000	113680000	172940000	113860000	59079000	16660	3132	15795	101025;101026;101027;101028;101029;101030;101031;101032;101033	136311;136312;136313;136314;136315;136316;136317;136318;136319;136320;136321;136322;136323;136324;136325;136326;136327;136328;136329;136330;136331	136330			21	
FRLDYLPNPQFSTAK	1	Unmodified	1795.9257	0.92571943	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		77.921	76.873	3	0.00031067	68614	160511_QHF_FH_JSI11i_3	68.173	56.15			0.90643	0.87552	21.878	4	3	Median	0.87291	0.7087	NaN	1	1	Median	0.91346	1.0376	20.864	2	2	Median	0.94123	0.85621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113900000	54746000	59158000	26459000	14395000	12064000	46806000	23723000	23082000	40639000	16628000	24012000	0	0	0	16661	5622	15796	101034;101035;101036;101037	136332;136333;136334;136335;136336	136333			5	
FRLEAPDADELPK	1	Unmodified	1499.762	0.76200815	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	2.75	0.433		1	3									3	1	61.043	60.952	2;3	0.00012133	54352	160511_QHF_FH_JSI11i_3	74.789	68.312			0.89459	0.87225	11.631	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0063	0.96407	16.099	2	1	Median	0.98965	1.0047	NaN	1	0	Median	629110000	292450000	336670000	0	0	0	0	0	0	510040000	222530000	287510000	119070000	69916000	49156000	16662	4315	15797	101038;101039;101040;101041	136337;136338;136339	136337			3	
FRLNLYELK	1	Unmodified	1194.6761	0.67609367	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		69.96	68.977	3	1.1101E-06	61037	160511_QHF_FH_JSI11i_3	112.36	98.588			0.86547	0.72206	9.9476	3	0	Median	0.90114	0.72206	NaN	1	0	Median	0.58777	0.67116	NaN	1	0	Median	0.86547	0.81713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	561710000	337100000	224610000	130350000	66228000	64117000	151090000	93914000	57180000	280270000	176950000	103320000	0	0	0	16663	1672	15798	101042;101043;101044;101045	136340;136341;136342;136343;136344;136345;136346;136347;136348;136349;136350;136351;136352	136342			13	
FRLPPGEYVVVPSTFEPNK	1	Unmodified	2175.1364	0.13644049	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							4	2			86.519	85.31	3	3.3264E-05	69818	160511_QHF_FH_JSI9i_3	72.421	61.653			1.0345	0.92964	5.4361	5	2	Median	1.0816	0.89529	6.061	4	2	Median	0.83878	0.92964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133280000	67110000	66174000	112710000	55031000	57681000	20572000	12079000	8493000	0	0	0	0	0	0	16664	871	15799	101046;101047;101048;101049;101050;101051	136353;136354;136355;136356;136357;136358;136359;136360	136356			7	
FRNEDIVPTNYK	1	Unmodified	1494.7467	0.74669243	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								3	2	2	40.393	39.913	2;3	0.00089963	34988	160511_QHF_FH_JSI11i_3	45.28	35.492			0.78308	0.85261	24.514	6	1	Median	NaN	NaN	NaN	0	0	Median	0.90038	1.0551	23.582	2	0	Median	0.8085	0.75831	34.546	2	1	Median	0.78029	0.8017	2.158	2	0	Median	559850000	270130000	289720000	0	0	0	97147000	42561000	54586000	292710000	135720000	156990000	169990000	91850000	78141000	16665	378	15800	101052;101053;101054;101055;101056;101057;101058	136361;136362;136363;136364;136365;136366;136367;136368	136362			8	
FRPDMEEEEAK	1	Unmodified	1379.6027	0.60273031	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.27		9	5					4		2	4	5	7	28.535	25.856	2;3	1.4074E-18	22166	160511_QHF_FH_JSI11i_3	160.22	152.31			0.86008	0.89863	32.034	18	3	Median	0.94037	0.80831	0.12031	2	0	Median	0.82903	1.0197	17.081	4	0	Median	0.89219	0.87492	16.788	5	0	Median	0.73994	0.81057	47.515	7	3	Median	4790700000	2229800000	2560900000	669700000	251330000	418370000	892200000	495320000	396880000	2312200000	1076600000	1235600000	916590000	406560000	510030000	16666	4267	15801	101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073;101074;101075;101076	136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380;136381;136382;136383;136384;136385;136386;136387;136388;136389;136390;136391;136392;136393;136394;136395;136396	136372			28	
FRPDMEEEEAK	1	Oxidation (M)	1395.5976	0.59764493	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							2	1	4	4	24.246	23.879	2;3	2.3389E-05	22720	160511_QHF_FH_JSI10i_2	100.93	90.743			1.5429	1.4108	67.463	9	3	Median	1.7083	1.4772	13.083	2	0	Median	0.35388	0.43163	NaN	1	0	Median	2.2408	2.2011	80.817	4	1	Median	1.1513	1.1427	29.81	2	2	Median	878590000	359500000	519090000	163130000	68839000	94292000	127540000	88209000	39329000	421470000	131610000	289860000	166450000	70845000	95604000	16667	4267	15801	101077;101078;101079;101080;101081;101082;101083;101084;101085;101086;101087	136397;136398;136399;136400;136401;136402;136403;136404;136405;136406;136407;136408	136404		2422	12	
FRPEETK	1	Unmodified	905.46068	0.46068117	2949	Q5T653	MRPL2	39S ribosomal protein L2, mitochondrial	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	8.792	8.582	3	0.010785	6266	160511_QHF_FH_JSI11i_3	51.854	32.218			1.0338	1.0658	16.627	5	0	Plateau	1.0346	0.88871	NaN	1	0	Median	0.84391	1.0598	NaN	1	0	Median	0.9168	0.88581	26.902	2	0	Median	1.0338	1.0602	NaN	1	0	Median	622600000	318350000	304250000	77129000	35625000	41504000	104990000	56462000	48528000	259940000	123680000	136260000	180550000	102590000	77960000	16668	2949	15802	101088;101089;101090;101091;101092	136409;136410;136411	136410			3	
FRPLQLETINVTMAGK	1	Unmodified	1816.9869	0.98693948	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			78.515	77.129	3	8.5452E-05	64745	160511_QHF_FH_JSI10i_3	77.324	68.527			0.62343	0.60546	16.295	2	0	Median	0.66325	0.53956	NaN	1	0	Median	0.586	0.6794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55319000	33804000	21515000	27003000	17624000	9378100	28316000	16180000	12136000	0	0	0	0	0	0	16669	1579	15803	101093;101094	136412;136413;136414	136412			3	
FRPLSFEVPK	1	Unmodified	1218.6761	0.67609367	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			61.747	60.229	3	0.045986	50454	160511_QHF_FH_JSI10i_3	54.486	50.188			0.52976	0.6211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52976	0.6211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28027000	15118000	12909000	0	0	0	28027000	15118000	12909000	0	0	0	0	0	0	16670	4124	15804	101095	136415	136415			0	
FRPPETTER	0	Unmodified	1131.5673	0.5672715	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			17.124	16.062	2;3	0.0031681	12801	160511_QHF_FH_JSI9i_3	80.438	55.515			1.4697	1.8638	26.349	4	0	Linear	1.8367	1.4929	29.52	2	0	Median	1.1428	1.3187	32.518	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	512970000	242930000	270050000	335230000	145700000	189520000	177750000	97223000	80524000	0	0	0	0	0	0	16671	4193	15805	101096;101097;101098;101099	136416;136417;136418;136419;136420;136421;136422	136422			7	
FRQDLMNIAGTTLSSK	1	Oxidation (M)	1796.9091	0.90908309	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	3	1	1	53.684	52.478	3	0.0010009	46814	160511_QHF_FH_JSI11i_3	58.246	44.673			0.91692	0.8875	73.471	8	7	Median	2.3299	1.8758	97.379	3	3	Median	0.4388	0.49108	84.967	3	3	Median	0.77312	0.72026	NaN	1	0	Median	1.0875	1.0936	NaN	1	1	Median	1177100000	577500000	599600000	499230000	204400000	294830000	443810000	241460000	202350000	158460000	90046000	68419000	75598000	41593000	34005000	16672	2090	15806	101100;101101;101102;101103;101104;101105;101106;101107	136423;136424;136425;136426;136427;136428;136429;136430;136431;136432	136424		1749	10	
FRQDLMNIAGTTLSSK	1	Unmodified	1780.9142	0.91416847	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.11		1	12						3	5	4	3	4	68.536	66.278	2;3	1.347E-17	59278	160511_QHF_FH_JSI11i_3	208.39	192.13			1.2454	1.2538	80.024	16	13	Median	1.5112	1.3008	81.051	5	4	Median	1.0581	1.2511	71.192	4	3	Median	0.82766	0.7793	122.74	3	3	Plateau	0.70593	0.73918	75.121	4	3	Median	10654000000	5720900000	4933200000	3308100000	1567600000	1740600000	2138000000	1184400000	953590000	4071900000	2277600000	1794300000	1136100000	691340000	444780000	16673	2090	15806	101108;101109;101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122;101123	136433;136434;136435;136436;136437;136438;136439;136440;136441;136442;136443;136444;136445;136446;136447;136448;136449;136450;136451;136452;136453;136454	136437			22	
FRSETITEEELVGLMNK	1	Oxidation (M)	2010.9932	0.99320665	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		63.021	63.021	3	0.00012624	56011	160511_QHF_FH_JSI11i_3	77.468	72.039			0.83445	0.77108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83445	0.77108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94031000	47712000	46319000	0	0	0	0	0	0	94031000	47712000	46319000	0	0	0	16674	1092	15807	101124	136455;136456;136457	136456		739	3	
FRSETITEEELVGLMNK	1	Unmodified	1994.9983	0.99829203	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	3	3	80.887	80.481	2;3	1.2661E-21	71675	160511_QHF_FH_JSI11i_3	188.25	164.4			0.91352	0.90298	15.5	10	2	Median	1.0018	0.84946	9.789	2	0	Median	0.77376	0.94879	10.762	2	0	Median	1.142	1.0819	10.988	3	0	Median	0.83586	0.8609	24.606	3	2	Median	2827400000	1306100000	1521300000	492580000	196050000	296530000	382800000	208200000	174600000	1458700000	622610000	836060000	493330000	279270000	214060000	16675	1092	15807	101125;101126;101127;101128;101129;101130;101131;101132;101133;101134	136458;136459;136460;136461;136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473;136474;136475;136476;136477;136478;136479	136463			22	
FRTEAAAAAPQR	0	Unmodified	1287.6684	0.66838253	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				16.134	15.079	2	0.0082265	11973	160511_QHF_FH_JSI9i_3	76.465	57.194			1.1132	0.90866	NaN	1	0	Median	1.1132	0.90866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35774000	15202000	20572000	35774000	15202000	20572000	0	0	0	0	0	0	0	0	0	16676	732	15808	101135	136480	136480			1	
FSADEFFIPR	0	Unmodified	1227.5924	0.59242362	3427	Q8IWT0	ZBTB8OS	Protein archease	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	83.655	83.048	2	0.0096603	73253	160511_QHF_FH_JSI9i_2	58.433	47.723			2.1438	1.846	NaN	1	1	Median	2.1438	1.846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27063000	8535500	18528000	27063000	8535500	18528000	0	0	0	0	0	0	0	0	0	16677	3427	15809	101136;101137	136481;136482	136482			2	
FSADEQFFSVGQAASSSAHSSK	1	Unmodified	2274.0189	0.018904126	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.675	62.394	3	1.041E-12	53813	160511_QHF_FH_JSI12i_3	102.45	94.646			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16678	1577	15810	101138	136483	136483			1	
FSADGMR	0	Unmodified	782.33812	0.33812319	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		18.711	18.153	2	0.049013	15457	160511_QHF_FH_JSI10i_2	43.066	19.271			1.2801	1.2929	15.259	4	0	Median	1.3985	1.2267	NaN	1	0	Median	0.98334	1.1807	20.289	2	0	Median	1.4616	1.4492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	479360000	224560000	254810000	103720000	41466000	62252000	168570000	76155000	92420000	207070000	106940000	100130000	0	0	0	16679	5215	15811	101139;101140;101141;101142	136484	136484			1	
FSAEFVDFTSQCLK	1	Unmodified	1677.7709	0.77085827	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	85.486	84.459	2	0.0053382	72983	160511_QHF_FH_JSI12i_2	62.466	44.602			1.6489	1.8609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6489	1.8609	NaN	1	1	Median	9388000	5003600	4384300	0	0	0	0	0	0	0	0	0	9388000	5003600	4384300	16680	1772	15812	101143	136485	136485			1	
FSAELIQHIPLSLR	0	Unmodified	1622.9144	0.91442646	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	2	1	89.07	88.508	3	4.0102E-05	76733	160511_QHF_FH_JSI12i_3	77.562	64.581			0.87301	0.97484	60.04	7	4	Median	0.79172	0.65545	NaN	1	1	Median	0.84287	0.97484	85.077	3	2	Median	1.6154	1.5471	38.116	2	1	Median	0.87301	0.87448	NaN	1	0	Median	250420000	136750000	113670000	23221000	14950000	8270400	65444000	38530000	26914000	68716000	34103000	34613000	93039000	49170000	43869000	16681	3466	15813	101144;101145;101146;101147;101148;101149;101150	136486;136487;136488;136489;136490;136491;136492;136493;136494;136495	136495			10	
FSAHYDAVEAELK	1	Unmodified	1478.7042	0.70415892	2529	Q14320;Q9Y247	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	yes	no	0	0	0	0		By MS/MS			2	0		1									1			51.772	50.832	2	0.00077796	44847	160511_QHF_FH_JSI10i_2	80.245	63.574			4.9237	6.0791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.9237	6.0791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61541000	15553000	45988000	0	0	0	61541000	15553000	45988000	0	0	0	0	0	0	16682	2529	15814	101151	136496	136496			1	
FSAIASQLVHAPPMQLGFPSLHSFIK	1	Unmodified	2822.4942	0.49417691	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.431	85.71	4	0.00024826	48935	160513_QHF_FH_JSI10Kac_6	71.297	51.222			0.85084	0.99703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85084	0.99703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68820000	51208000	17612000	0	0	0	68820000	51208000	17612000	0	0	0	0	0	0	16683	661	15815	101152	136497	136497			1	
FSALQQAVPTESTDNR	0	Unmodified	1762.8486	0.84859132	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.008	49.33	2	7.2617E-05	44423	160511_QHF_FH_JSI10i_1	89.629	74.257			1.035	0.98795	10.222	4	0	Median	1.0457	0.89264	NaN	1	0	Median	0.80502	0.93226	NaN	1	0	Median	1.1464	1.114	NaN	1	0	Median	1.0245	1.047	NaN	1	0	Median	273620000	146250000	127370000	31726000	14966000	16759000	84398000	51283000	33115000	87788000	42090000	45698000	69707000	37907000	31800000	16684	2217	15816	101153;101154;101155;101156	136498;136499;136500;136501;136502;136503;136504;136505	136503			8	
FSALQQAVPTESTDNRR	0	Unmodified	1918.9497	0.94970235	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.88		7	7					1	4	6	5	3	5	44.616	41.367	2;3	9.5292E-17	36397	160511_QHF_FH_JSI10i_2	141	119.77			0.96062	0.99765	32.141	19	4	Median	1.4142	1.2039	25.906	6	0	Median	0.83709	0.97225	24.418	5	0	Median	0.83851	0.86016	18.274	3	0	Median	0.82444	0.89461	31.825	5	4	Median	1928900000	1014900000	914020000	592610000	246780000	345830000	939470000	546900000	392570000	267970000	146800000	121170000	128890000	74437000	54451000	16685	2217	15817	101157;101158;101159;101160;101161;101162;101163;101164;101165;101166;101167;101168;101169;101170;101171;101172;101173;101174;101175	136506;136507;136508;136509;136510;136511;136512;136513;136514;136515;136516;136517;136518;136519;136520;136521;136522;136523;136524;136525;136526;136527;136528;136529;136530;136531;136532;136533;136534	136525			29	
FSAMHEFQNLHAQSK	1	Unmodified	1773.8257	0.82568781	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.821	43.972	3	3.3363E-05	37220	160511_QHF_FH_JSI12i_3	95.751	89.314			1.4256	1.2431	27.934	4	1	Median	1.5154	1.2449	NaN	1	1	Median	1.7014	1.9842	NaN	1	0	Median	1.3411	1.2412	NaN	1	0	Median	1.0255	1.0308	NaN	1	0	Median	241450000	104530000	136920000	28861000	11980000	16881000	37498000	12119000	25379000	86795000	39663000	47132000	88294000	40769000	47525000	16686	1042	15818	101176;101177;101178;101179	136535;136536;136537;136538;136539;136540	136539			6	
FSAPVVPSSFNFGGPAPGMN	0	Unmodified	1978.9247	0.92473315	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									2		2	2	101.2	101.07	2;3	1.2555E-11	89231	160511_QHF_FH_JSI9i_1	139.77	128.85			1.0838	0.8653	14.916	6	1	Linear	1.4164	1.1706	14.928	2	1	Median	NaN	NaN	NaN	0	0	Median	0.97932	0.94023	13.586	2	0	Median	0.977	1.0303	14.847	2	0	Median	1048700000	531080000	517590000	282640000	117660000	164980000	0	0	0	458770000	253870000	204900000	307260000	159550000	147710000	16687	686	15819	101180;101181;101182;101183;101184;101185	136541;136542;136543;136544;136545;136546;136547;136548	136547			8	
FSARPSSIEAIPFVIEK	1	Unmodified	1890.0251	0.025099124	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			84.736	83.528	3	0.0031296	69894	160511_QHF_FH_JSI10i_3	51.888	42.1			0.34435	0.40339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34435	0.40339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9638000	7832500	1805400	0	0	0	9638000	7832500	1805400	0	0	0	0	0	0	16688	5339	15820	101186;101187	136549;136550	136549			2	
FSASGELGNGNIK	1	Unmodified	1292.6361	0.63607935	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.01	5	4	4				4	3		3	7	5	5	42.928	38.807	2;3	1.1503E-52	33412	160511_QHF_FH_JSI12i_2	212.82	193.03			1.0171	1.0337	54.973	20	4	Median	1.0636	0.90885	20.108	3	0	Median	0.87208	1.0144	60.695	7	2	Median	0.94257	0.95325	57.7	5	0	Median	1.1326	1.2725	34.816	5	2	Median	7296700000	3834700000	3462000000	1229900000	662330000	567600000	1885600000	1080300000	805290000	2548200000	1289900000	1258300000	1633000000	802180000	830840000	16689	1010	15821	101188;101189;101190;101191;101192;101193;101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204;101205;101206;101207	136551;136552;136553;136554;136555;136556;136557;136558;136559;136560;136561;136562;136563;136564;136565;136566;136567;136568;136569;136570;136571;136572;136573;136574;136575;136576;136577;136578;136579;136580;136581;136582;136583;136584;136585;136586;136587;136588;136589;136590;136591;136592	136559			42	
FSASSGGGGSR	0	Unmodified	968.43117	0.43117195	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.25		4	1				1	3		2	2	3	2	7.5391	3.0767	2	0.0020409	2944	160513_QHF_FH_JSI9Kac_5	73.233	70.105			1.0202	1.046	13.484	9	0	Median	1.1993	1.0273	21.249	2	0	Median	0.78826	0.93825	13.809	2	0	Median	1.1262	1.1205	10.257	3	0	Median	0.96282	1.0499	10.735	2	0	Median	620380000	319950000	300430000	148170000	68667000	79507000	147880000	75997000	71879000	221760000	125690000	96062000	102570000	49591000	52979000	16690	2084	15822	101208;101209;101210;101211;101212;101213;101214;101215;101216	136593;136594;136595;136596;136597;136598;136599;136600;136601;136602	136596			9	
FSATEVTNK	1	Unmodified	995.49238	0.49237523	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	1	3	2	27.099	25.22	2	0.0092309	21020	160511_QHF_FH_JSI11i_2	51.346	36.57			0.72496	0.72093	24.538	7	3	Median	0.97839	0.81038	NaN	1	0	Median	0.37922	0.44467	NaN	1	1	Median	0.72496	0.72093	14.111	3	1	Median	0.63701	0.68535	32.667	2	1	Median	439980000	231560000	208410000	62940000	24809000	38131000	88126000	50801000	37325000	139950000	73870000	66082000	148960000	82085000	66873000	16691	3499	15823	101217;101218;101219;101220;101221;101222;101223	136603;136604;136605;136606;136607;136608	136608			6	
FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP	0	Unmodified	2949.443	0.44298878	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		101.94	101.89	3	8.6698E-05	92618	160511_QHF_FH_JSI11i_1	42.039	37.514			1.1081	1.0716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1081	1.0716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	186970000	85713000	101260000	0	0	0	106510000	45026000	61482000	80463000	40687000	39776000	0	0	0	16692	2380	15824	101224;101225	136609;136610	136609			1	
FSAYIKNSNPALNDNLEK	2	Acetyl (K)	2079.0273	0.027283968	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.978	64.282	3	0.00072285	34250	160513_QHF_FH_JSI11Kac_5	61.648	51.726			0.59935	0.58794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59935	0.58794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7353500	4477900	2875600	0	0	0	0	0	0	7353500	4477900	2875600	0	0	0	16693	119	15825	101226	136611	136611	76;77		1	
FSDAGQPMSFVLEFHFEPNEYFTNEVLTK	1	Unmodified	3422.5805	0.58054489	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.729	88.858	3;4	1.1333E-228	52664	160513_QHF_FH_JSI10Kac_6	313.05	296.65			0.90149	0.94927	14.48	5	1	Median	1.0411	0.8959	NaN	1	0	Median	0.71886	0.85366	16.537	2	1	Median	1.2093	1.1361	NaN	1	0	Median	0.90149	0.94927	NaN	1	0	Median	1249700000	681990000	567730000	232610000	109890000	122720000	628240000	357680000	270560000	145160000	73893000	71266000	243710000	140520000	103180000	16694	1852	15826	101227;101228;101229;101230;101231	136612;136613;136614;136615;136616;136617;136618;136619;136620	136618			9	
FSDAGQPMSFVLEFHFEPNEYFTNEVLTK	1	Oxidation (M)	3438.5755	0.57545951	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	95.164	85.722	3	1.3593E-14	46577	160513_QHF_FH_JSI12Kac_6	103.68	102			0.79985	0.84093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79985	0.84093	NaN	1	0	Median	71519000	39966000	31553000	0	0	0	0	0	0	0	0	0	71519000	39966000	31553000	16695	1852	15826	101232	136621	136621		1534	1	
FSDFLGLHSK	1	Unmodified	1149.5819	0.58185893	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	53.927	52.962	2;3	0.00017301	46521	160511_QHF_FH_JSI9i_2	61.435	51.203			0.97713	0.79723	19.656	4	1	Linear	1.3205	1.1192	NaN	1	0	Median	1.0287	1.2818	NaN	1	1	Median	0.81041	0.80346	NaN	1	0	Median	0.92818	1.0234	NaN	1	0	Median	599700000	294040000	305650000	91969000	42046000	49923000	174240000	88339000	85897000	206080000	98312000	107770000	127410000	65344000	62069000	16696	444	15827	101233;101234;101235;101236;101237	136622;136623;136624;136625;136626	136624			5	
FSDFLGLYEK	1	Unmodified	1217.5968	0.5968403	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.298	78.485	2	0.00012606	68882	160511_QHF_FH_JSI11i_2	84.17	69.501			1.0799	1.039	12.994	4	0	Median	1.1448	0.97018	NaN	1	0	Median	0.88443	1.0775	NaN	1	0	Median	1.0187	1.0018	NaN	1	0	Median	1.148	1.2969	NaN	1	0	Median	169320000	82269000	87052000	29151000	13397000	15754000	37762000	21507000	16255000	55721000	24364000	31357000	46687000	23001000	23686000	16697	2448	15828	101238;101239;101240;101241	136627;136628;136629;136630;136631;136632;136633	136631			7	
FSDFLLDPYK	1	Unmodified	1243.6125	0.61249036	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	82.324	81.586	2	1.5884E-05	72526	160511_QHF_FH_JSI10i_2	99.815	87.86			0.89099	0.97289	32.92	5	2	Median	1.0436	0.91978	60.525	2	2	Median	0.64705	0.80508	NaN	1	0	Median	1.1413	1.152	NaN	1	0	Median	0.89099	0.97289	NaN	1	0	Median	264950000	137330000	127620000	65065000	33568000	31497000	67692000	36759000	30933000	70961000	33242000	37719000	61231000	33761000	27470000	16698	5330	15829	101242;101243;101244;101245;101246	136634;136635;136636;136637;136638;136639;136640;136641	136640			8	
FSDFLLTK	1	Unmodified	969.51713	0.51713341	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			65.924	65.089	2	0.0078866	57736	160511_QHF_FH_JSI10i_2	57.96	40.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16699	4750	15830	101247	136642	136642			1	
FSDHVALLSVFQAWDDAR	0	Unmodified	2076.0065	0.0064889465	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	94.46	88.205	2;3	1.0033E-31	49353	160513_QHF_FH_JSI10Kac_6	213.34	191.28			0.78543	0.81087	14.907	10	4	Median	0.91551	0.79496	12.466	3	1	Median	0.64428	0.76135	9.5057	3	2	Plateau	0.95778	0.90906	24.862	2	1	Median	0.87727	0.90889	15.805	2	0	Median	1751100000	898490000	852640000	421450000	213870000	207580000	475650000	259490000	216160000	379050000	181390000	197650000	474990000	243740000	231250000	16700	2265	15831	101248;101249;101250;101251;101252;101253;101254;101255;101256;101257	136643;136644;136645;136646;136647;136648;136649;136650;136651	136651			9	
FSDIQIR	0	Unmodified	877.46577	0.46576654	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	39.016	36.21	2	0.019772	30974	160511_QHF_FH_JSI11i_2	57.811	17.239			0.90565	0.97036	6.0031	5	0	Median	1.2112	1.0072	5.2753	2	0	Median	0.82291	1.0032	NaN	1	0	Median	0.90565	0.91002	NaN	1	0	Median	0.80775	0.91328	NaN	1	0	Median	1119600000	523120000	596510000	234430000	92049000	142380000	265100000	141400000	123700000	359910000	176190000	183710000	260190000	113480000	146720000	16701	1004	15832	101258;101259;101260;101261;101262	136652;136653;136654;136655	136654			4	
FSDPGQPMSFVLEFHFEPNDYFTNSVLTK	1	Unmodified	3392.57	0.5699802	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	96.894	89.396	3	3.9633E-44	52840	160513_QHF_FH_JSI10Kac_6	209.65	198.54			0.78914	0.83752	6.6774	4	4	Median	0.95629	0.81857	NaN	1	1	Median	0.69309	0.83326	3.9569	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87489	0.93803	NaN	1	1	Median	912300000	502930000	409370000	153680000	49538000	104140000	601160000	353710000	247440000	0	0	0	157460000	99677000	57786000	16702	4309	15833	101263;101264;101265;101266	136656;136657;136658;136659	136659			4	
FSDQFPLPLK	1	Unmodified	1190.6336	0.63356015	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.69	2	4						1		2	1	2	2	79.728	77.65	2	1.7597E-07	69123	160511_QHF_FH_JSI11i_2	133.57	116.19			0.93432	0.94831	8.8346	7	0	Median	1.1187	0.95144	7.6916	2	0	Median	0.76164	0.94831	NaN	1	0	Median	0.99951	0.99475	12.453	2	0	Median	0.84583	0.90855	13.108	2	0	Median	875300000	438740000	436560000	136900000	69060000	67840000	169150000	90855000	78291000	359260000	172920000	186340000	210000000	105910000	104090000	16703	3914	15834	101267;101268;101269;101270;101271;101272;101273	136660;136661;136662;136663;136664;136665;136666;136667;136668;136669;136670;136671;136672;136673;136674;136675	136672			16	
FSDSEIGGITIAHVIR	0	Unmodified	1713.905	0.90498399	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	2	1		75.756	73.696	3	7.324E-06	66182	160511_QHF_FH_JSI10i_2	78.069	59.24			0.63847	0.71331	19.64	4	2	Median	0.60864	0.51243	NaN	1	1	Median	0.63719	0.76527	8.106	2	0	Median	0.69438	0.7041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	321300000	208610000	112680000	61518000	42303000	19215000	149250000	92727000	56524000	110530000	73582000	36946000	0	0	0	16704	1529	15835	101274;101275;101276;101277	136676;136677;136678;136679;136680	136678			4	
FSDSYASVIK	1	Unmodified	1115.5499	0.5498901	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.03	1	6					1			2	2	3	1	49.875	47.318	2	6.4393E-05	42631	160511_QHF_FH_JSI10i_1	90.263	66.108			1.3903	1.4053	29.464	6	4	Median	1.9013	1.6695	NaN	1	1	Median	0.8362	1.0101	22.322	2	0	Median	1.4224	1.416	27.926	2	2	Median	1.628	1.8175	NaN	1	1	Median	913530000	429480000	484040000	131720000	56908000	74810000	342990000	183090000	159900000	269800000	111370000	158430000	169020000	78117000	90905000	16705	1126	15836	101278;101279;101280;101281;101282;101283;101284;101285	136681;136682;136683;136684;136685;136686;136687;136688;136689	136682			9	
FSDVLHTIK	1	Unmodified	1058.576	0.57604528	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.699	41.731	3	0.00052933	36768	160511_QHF_FH_JSI10i_2	65.535	54.316			2.0207	2.2324	67.219	4	2	Median	4.6077	3.831	NaN	1	1	Median	1.0632	1.3009	NaN	1	0	Median	1.1321	1.1425	NaN	1	0	Median	3.6069	3.9511	NaN	1	1	Median	168260000	60080000	108180000	25404000	6006500	19397000	44472000	18375000	26097000	71112000	27935000	43177000	27275000	7764500	19511000	16706	1152	15837	101286;101287;101288;101289	136690;136691;136692;136693	136693			4	
FSEAEQR	0	Unmodified	865.393	0.39299553	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	8.0696	7.7153	2	0.017903	5432	160511_QHF_FH_JSI11i_2	60.76	38.138			1.1072	1.1706	9.4482	6	0	Median	1.3717	1.2078	NaN	1	0	Median	1.0642	1.2697	13.563	2	0	Median	1.1149	1.1098	8.5826	2	0	Median	1.0286	1.162	NaN	1	0	Median	1117000000	523560000	593460000	128110000	68581000	59525000	425170000	196510000	228660000	411440000	178700000	232750000	152310000	79776000	72530000	16707	1411	15838	101290;101291;101292;101293;101294;101295	136694;136695;136696;136697	136696			4	
FSEEQRFNNFLK	1	Unmodified	1557.7576	0.75759147	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	54.749	54.155	3	0.0034855	47785	160511_QHF_FH_JSI11i_3	50.207	34.07			1.5847	1.6729	10.304	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6006	1.8457	NaN	1	0	Median	1.572	1.5021	NaN	1	0	Median	1.5847	1.6729	NaN	1	0	Median	210770000	83717000	127050000	0	0	0	71283000	27232000	44050000	81280000	35329000	45951000	58207000	21156000	37051000	16708	1024	15839	101296;101297;101298	136698;136699;136700	136698			3	
FSEFKSHSGEFR	1	Acetyl (K)	1498.6841	0.68409218	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.931	37.257	3	0.0035256	20306	160513_QHF_FH_JSI11Kac_6	60.448	55.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3438500	3438500	0	0	0	0	0	0	0	3438500	3438500	0	0	0	0	16709	3325	15840	101299	136701	136701	2833		1	
FSEFYSK	1	Unmodified	906.41233	0.41233399	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	33.047	31.944	2	0.025501	27074	160511_QHF_FH_JSI12i_2	54.549	35.819			0.60353	1.6878	65.854	3	2	Plateau	1.9166	1.6878	NaN	1	1	Median	1.3602	1.688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50406	0.53948	NaN	1	0	Median	377720000	149390000	228320000	127980000	38733000	89248000	167350000	60786000	106570000	0	0	0	82382000	49872000	32510000	16710	3791	15841	101300;101301;101302	136702;136703;136704	136702			3	
FSEGNILELLHR	0	Unmodified	1426.7569	0.75686319	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							4	3	3	4	85.771	84.994	3	6.9761E-08	75584	160511_QHF_FH_JSI11i_3	128.68	119.95			0.96389	0.87353	40.922	11	6	Median	1.0378	0.88629	2.0501	2	1	Median	0.6972	0.8537	38.129	3	1	Median	1.0721	1.0574	22.229	2	1	Median	0.62463	0.63621	55.113	4	3	Median	473440000	235170000	238270000	45794000	20762000	25032000	131490000	72669000	58825000	167750000	72119000	95629000	128410000	69619000	58786000	16711	4337	15842	101303;101304;101305;101306;101307;101308;101309;101310;101311;101312;101313;101314;101315;101316	136705;136706;136707;136708;136709;136710;136711;136712;136713;136714;136715;136716;136717;136718;136719;136720;136721;136722;136723;136724	136706			20	
FSEGTSADREIQR	0	Unmodified	1494.7063	0.70628418	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	19.62	19.16	2;3	8.8675E-05	15684	160511_QHF_FH_JSI12i_3	64.65	54.599			1.0036	0.98786	12.21	11	0	Median	1.3538	1.1517	5.626	2	0	Median	0.81941	1.0033	3.7486	2	0	Median	1.0163	0.99074	5.6273	4	0	Median	0.79914	0.80446	12.143	3	0	Median	1539600000	791340000	748260000	273420000	117650000	155760000	415730000	225450000	190270000	551950000	293970000	257990000	298490000	154260000	144230000	16712	2006	15843	101317;101318;101319;101320;101321;101322;101323;101324;101325;101326;101327	136725;136726;136727;136728;136729;136730;136731;136732;136733;136734;136735;136736;136737;136738;136739;136740;136741;136742	136741			18	
FSEGVLQSPSQDQEK	1	Unmodified	1677.7846	0.78459408	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.221	39.586	2	8.5619E-07	35397	160511_QHF_FH_JSI10i_1	136.38	124.46			1.0749	1.0342	9.2945	4	0	Median	1.2084	1.0053	NaN	1	0	Median	0.89512	1.064	NaN	1	0	Median	0.99522	0.95744	NaN	1	0	Median	1.161	1.1884	NaN	1	0	Median	248840000	129820000	119020000	44951000	25038000	19914000	63472000	32459000	31013000	73271000	37930000	35341000	67144000	34395000	32749000	16713	4581	15844	101328;101329;101330;101331	136743;136744;136745;136746;136747;136748;136749;136750	136748			8	
FSELPTQMFPEGATPAEITK	1	Unmodified	2193.0664	0.066371591	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	89.394	88.929	2	3.7304E-11	80902	160511_QHF_FH_JSI11i_1	104.17	90.74			0.57997	0.60463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57997	0.60463	NaN	1	0	Median	20028000	12789000	7238300	0	0	0	0	0	0	0	0	0	20028000	12789000	7238300	16714	5553	15845	101332;101333	136751;136752	136751			2	
FSELTAEK	1	Unmodified	923.46001	0.46001246	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	3.14	6	7	1				1			4	5	4	2	24.907	23.631	2	0.0079495	19751	160511_QHF_FH_JSI11i_2	67.993	49.957			0.6758	0.79583	82.588	15	15	Median	0.66562	0.54792	97.197	4	4	Linear	1.6489	2.0548	67.005	5	5	Median	1.1066	1.0713	108.26	4	4	Median	0.4834	0.52655	33.819	2	2	Median	7900800000	4101100000	3799700000	1279300000	621560000	657740000	2561000000	1325300000	1235700000	2830400000	1447300000	1383100000	1230100000	706890000	523160000	16715	1630	15846	101334;101335;101336;101337;101338;101339;101340;101341;101342;101343;101344;101345;101346;101347;101348	136753;136754;136755;136756;136757;136758;136759;136760;136761;136762;136763;136764;136765;136766;136767;136768	136765			16	
FSEPDPSHTLEER	0	Unmodified	1542.6951	0.69505079	4718	Q9H4F8	SMOC1	SPARC-related modular calcium-binding protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.841	38.476	3	0.018856	32854	160511_QHF_FH_JSI12i_2	31.389	26.406			0.91894	1.0121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91894	1.0121	NaN	1	0	Median	33594000	20649000	12945000	0	0	0	0	0	0	0	0	0	33594000	20649000	12945000	16716	4718	15847	101349	136769	136769			1	
FSEPVYAAFWLSK	1	Unmodified	1543.7711	0.77111627	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	2	2	2	92.661	86.541	2	4.8378E-12	43484	160513_QHF_FH_JSI12Kac_6	122.33	103.65			0.53096	0.58468	41.443	7	5	Median	1.43	1.2247	NaN	1	0	Median	0.35977	0.42985	8.703	2	2	Median	0.68642	0.65587	38.481	2	2	Median	0.66458	0.73345	32.059	2	1	Median	257390000	160310000	97082000	33592000	16091000	17500000	52138000	37041000	15098000	132230000	80886000	51346000	39429000	26291000	13138000	16717	682	15848	101350;101351;101352;101353;101354;101355;101356	136770;136771;136772;136773;136774;136775	136774			6	
FSEQGGTPQNVATSSSLTAHLR	0	Unmodified	2287.1193	0.11928687	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	51.842	51.391	3	6.1271E-28	44017	160511_QHF_FH_JSI12i_3	151.21	136.95			1.0936	1.0461	7.7039	4	2	Median	1.2156	1.0992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99936	0.99365	0.26419	2	1	Median	1.1349	1.16	NaN	1	1	Median	259220000	123850000	135370000	47236000	21439000	25797000	0	0	0	143750000	66623000	77128000	68238000	35790000	32448000	16718	4653	15849	101357;101358;101359;101360;101361;101362;101363	136776;136777;136778;136779;136780;136781;136782;136783	136782			7	
FSETFSLYPQFMFHLR	0	Unmodified	2048.9819	0.9818541	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	93.774	85.344	2;3	3.6373E-43	46709	160513_QHF_FH_JSI11Kac_6	220.23	210.44			0.96283	1.0163	14.326	7	2	Median	1.3024	1.0911	NaN	1	0	Median	0.8837	1.0439	11.258	2	1	Median	1.153	1.0919	12.705	2	0	Median	0.83143	0.8842	19.696	2	1	Median	1469900000	774500000	695360000	215540000	94294000	121240000	622190000	352660000	269530000	314870000	144940000	169940000	317250000	182600000	134650000	16719	2674	15850	101364;101365;101366;101367;101368;101369;101370;101371;101372	136784;136785;136786;136787;136788;136789;136790;136791;136792;136793;136794	136786			11	
FSETHADPHNSR	0	Unmodified	1396.612	0.61198986	166	O00767	SCD	Acyl-CoA desaturase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.2132	6.3109	2	0.0003433	3928	160511_QHF_FH_JSI12i_3	89.827	77.211			0.91791	0.93995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91791	0.93995	NaN	1	1	Median	15644000	9206100	6437500	0	0	0	0	0	0	0	0	0	15644000	9206100	6437500	16720	166	15851	101373	136795	136795			1	
FSEWGNNAFFYYFEHR	0	Unmodified	2112.9119	0.91186028	846	P06276	BCHE	Cholinesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.347	80.414	3	0.00023425	44198	160513_QHF_FH_JSI9Kac_6	78.441	73.637			0.88219	0.93305	35.619	3	2	Median	1.8765	1.64	NaN	1	1	Median	0.72112	0.84855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88219	0.93305	NaN	1	1	Median	178930000	89747000	89182000	36949000	11715000	25234000	102840000	56098000	46740000	0	0	0	39142000	21934000	17207000	16721	846	15852	101374;101375;101376	136796;136797;136798	136796			3	
FSFDLGK	1	Unmodified	812.40685	0.40685468	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.23	5.07	3	4	4						2	2	3	4	4	62.599	60.468	2	0.0089406	51756	160511_QHF_FH_JSI12i_2	81.297	28.614			1.1403	1.0971	13.997	13	0	Median	1.3716	1.1277	3.8883	2	0	Median	0.73344	0.89829	11.559	3	0	Median	1.1036	1.0891	10.341	4	0	Median	1.21	1.2898	10.151	4	0	Median	5480100000	2487500000	2992600000	884850000	370960000	513890000	1409700000	736660000	673010000	1942700000	779580000	1163100000	1242900000	600280000	642580000	16722	2193	15853	101377;101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389	136799;136800;136801;136802;136803;136804;136805;136806;136807;136808;136809;136810;136811;136812;136813;136814;136815;136816;136817	136800			19	
FSFGLLDLPFR	0	Unmodified	1310.7023	0.70230842	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	2	1	1	1	101.03	98.668	2	1.4932E-36	89104	160511_QHF_FH_JSI12i_3	179.8	146.54			0.80462	1.0126	11.874	4	1	Linear	1.2017	1.0137	1.404	2	1	Median	0.70435	0.80203	NaN	1	0	Median	1.1077	1.0216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	429250000	209490000	219760000	144780000	62470000	82315000	148220000	84968000	63249000	136250000	62048000	74199000	0	0	0	16723	28	15854	101390;101391;101392;101393;101394	136818;136819;136820;136821;136822;136823	136823			6	
FSFITHLQDK	1	Unmodified	1234.6346	0.63462279	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			58.484	56.944	2;3	0.0011887	47723	160511_QHF_FH_JSI10i_3	78.098	64.72			1.2357	1.1965	108.18	4	4	Median	1.6843	1.3714	3.6576	2	2	Median	0.34744	0.39688	140.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145670000	82904000	62768000	108050000	57651000	50399000	37621000	25252000	12369000	0	0	0	0	0	0	16724	3021	15855	101395;101396;101397;101398	136824;136825;136826;136827;136828	136826			5	
FSFLLHFYTVPIPK	1	Unmodified	1707.9389	0.9388503	1127	P17813	ENG	Endoglin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	4	3	2	92.435	84.612	2;3	3.66E-33	49119	160513_QHF_FH_JSI10Kac_6	208.72	169.94			0.96737	0.83053	75.32	10	8	Median	0.96737	0.83053	23.233	2	0	Median	0.75528	0.90146	95.799	4	4	Median	0.91717	0.87998	92.883	2	2	Median	1.3418	1.425	102.17	2	2	Median	2141900000	1023600000	1118300000	368800000	164940000	203860000	941680000	431600000	510080000	551100000	282560000	268540000	280300000	144530000	135770000	16725	1127	15856	101399;101400;101401;101402;101403;101404;101405;101406;101407;101408;101409	136829;136830;136831;136832;136833;136834;136835;136836;136837;136838;136839;136840	136840			12	
FSFPTIHAIWSRPESTQVQNILR	0	Unmodified	2726.4293	0.42926846	722	O95749	GGPS1	Geranylgeranyl pyrophosphate synthase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			85.962	80.261	4	0.014078	45057	160513_QHF_FH_JSI10Kac_6	49.106	35.651			0.89068	1.0189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89068	1.0189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113850000	61910000	51939000	0	0	0	113850000	61910000	51939000	0	0	0	0	0	0	16726	722	15857	101410	136841	136841			1	
FSFPTVALHSMMK	1	Unmodified	1494.7363	0.73632744	5748	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	3	0			4							1	1	1	1	83.967	83.304	3	0.0013461	74091	160511_QHF_FH_JSI11i_3	53.363	48.562			1.0074	1.1008	42.606	4	0	Median	0.76602	0.60561	NaN	1	0	Median	0.83379	0.97411	NaN	1	0	Median	1.7511	1.6556	NaN	1	0	Median	1.2172	1.2441	NaN	1	0	Median	183910000	84813000	99101000	30203000	14010000	16192000	24932000	13005000	11927000	60486000	24569000	35918000	68293000	33229000	35064000	16727	5748	15858	101411;101412;101413;101414	136842	136842			1	
FSFQCPGR	0	Unmodified	997.44399	0.44398525	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	41.998	41.126	2	0.0069632	35151	160511_QHF_FH_JSI12i_3	60.972	42.936			1.106	1.1674	9.8743	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9895	1.0887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2362	1.2518	NaN	1	0	Median	64656000	31651000	33005000	0	0	0	29691000	14695000	14996000	0	0	0	34965000	16956000	18009000	16728	2403	15859	101415;101416	136843;136844	136844			2	
FSFSGNTLVSSSADPEGHFETPIWIER	0	Unmodified	3009.4145	0.41446584	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		100.78	100.7	3	9.3698E-51	89742	160511_QHF_FH_JSI11i_3	214	198.32			1.1129	1.1679	11.126	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0975	1.2634	NaN	1	1	Median	1.1285	1.0795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	232290000	143350000	88946000	0	0	0	51787000	28984000	22803000	180510000	114360000	66143000	0	0	0	16729	2569	15860	101417;101418	136845;136846	136845			2	
FSFSPEPTLEDIRR	0	Unmodified	1692.8471	0.84713476	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	71.435	70.65	3	2.3646E-05	59237	160511_QHF_FH_JSI10i_3	110.51	96.48			1.1302	1.1147	16.446	7	1	Median	1.4907	1.2381	34.422	2	1	Median	0.89651	1.061	6.9713	2	0	Median	1.0894	1.0713	8.344	2	0	Median	1.1593	1.1771	NaN	1	0	Median	1044200000	527860000	516380000	207240000	96312000	110930000	378190000	201360000	176820000	357230000	178100000	179130000	101590000	52080000	49505000	16730	4760	15861	101419;101420;101421;101422;101423;101424;101425	136847;136848;136849;136850;136851;136852;136853;136854;136855;136856;136857	136849			11	
FSFTLPYPVK	1	Unmodified	1197.6434	0.64339656	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.34	90.8	2	1.4221E-05	79681	160511_QHF_FH_JSI11i_2	101.25	95.943			0.84208	0.82328	9.2659	4	0	Median	0.95729	0.82136	NaN	1	0	Median	0.66889	0.82521	NaN	1	0	Median	0.9472	0.98378	NaN	1	0	Median	0.74863	0.80783	NaN	1	0	Median	216830000	115620000	101210000	37399000	18574000	18825000	59177000	31510000	27667000	76923000	38405000	38518000	43328000	27131000	16197000	16731	5177	15862	101426;101427;101428;101429	136858;136859;136860;136861;136862;136863	136861			6	
FSGAVLNVPDTSDNSK	1	Unmodified	1649.7897	0.78967946	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		55.159	54.747	2	9.6741E-05	49344	160511_QHF_FH_JSI10i_1	74.987	53.615			0.46206	0.45014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46206	0.45014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52854000	26856000	25997000	0	0	0	0	0	0	52854000	26856000	25997000	0	0	0	16732	5677	15863	101430;101431	136864;136865	136865			2	
FSGEEGEIEDDESGTENREEK	1	Unmodified	2384.9728	0.97280137	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	29.266	28.673	3	1.6076E-07	25158	160511_QHF_FH_JSI9i_1	88.755	72.448			0.78508	0.84042	10.047	4	0	Median	1.0325	0.84718	NaN	1	0	Median	0.71402	0.83371	NaN	1	0	Median	0.72065	0.71046	NaN	1	0	Median	0.85527	0.89864	NaN	1	0	Median	421720000	218350000	203370000	70470000	33210000	37260000	114720000	74019000	40698000	114190000	50132000	64063000	122340000	60984000	61353000	16733	5542	15864	101432;101433;101434;101435	136866;136867;136868;136869	136869			4	
FSGFGSGAGGK	1	Unmodified	970.45084	0.45084476	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	25.394	25.373	2	0.005654	21526	160511_QHF_FH_JSI11i_3	53.124	35.562			1.7882	1.6777	61.975	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7882	1.6777	NaN	1	0	Median	1.1491	1.161	82.329	2	2	Median	408880000	192290000	216600000	0	0	0	0	0	0	96119000	38416000	57703000	312760000	153870000	158890000	16734	5382	15865	101436;101437;101438	136870;136871;136872;136873	136870			4	
FSGGFGAR	0	Unmodified	797.38204	0.38203692	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	22.707	21.976	2	0.0045076	18811	160511_QHF_FH_JSI9i_2	68.485	58.178			0.95151	0.89941	8.1626	6	1	Median	1.1246	0.94424	8.6285	2	0	Median	0.71537	0.85747	5.3511	2	1	Median	1.0721	1.0246	NaN	1	0	Median	0.88795	0.90839	NaN	1	0	Median	2052000000	1041500000	1010500000	679320000	298990000	380330000	680590000	386710000	293880000	296190000	143580000	152610000	395900000	212190000	183700000	16735	154	15866	101439;101440;101441;101442;101443;101444	136874;136875;136876;136877	136876			4	
FSGGYPALMDCMNK	1	Unmodified	1589.6677	0.66765553	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	67.323	66.422	2	0.00012433	57977	160511_QHF_FH_JSI11i_2	101.71	94.583			1.2024	1.47	35.696	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2024	1.47	NaN	1	0	Median	0.97294	0.98006	NaN	1	0	Median	1.7633	1.9967	NaN	1	0	Median	151210000	77146000	74060000	0	0	0	38995000	23486000	15509000	61440000	32444000	28997000	50771000	21216000	29555000	16736	4336	15867	101445;101446;101447	136878;136879;136880;136881	136881			4	
FSGHVSWVGK	1	Unmodified	1102.556	0.55597854	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	3	3	4	5	37.687	35.246	2;3	4.9487E-07	19548	160513_QHF_FH_JSI10Kac_6	104.22	87.445			1.0977	1.0195	72.045	14	5	Median	1.1189	0.92148	3.2626	2	0	Median	0.73049	0.85097	19.239	3	0	Plateau	1.0469	1.012	98.994	4	2	Median	1.3099	1.2987	83.072	5	3	Median	2180800000	1190100000	990710000	414190000	213070000	201120000	430500000	214800000	215700000	410030000	233610000	176410000	926080000	528600000	397480000	16737	5552	15868	101448;101449;101450;101451;101452;101453;101454;101455;101456;101457;101458;101459;101460;101461;101462	136882;136883;136884;136885;136886;136887;136888;136889;136890;136891;136892;136893;136894;136895;136896;136897;136898;136899;136900	136900			19	
FSGKDPNSK	2	Unmodified	978.47706	0.47705951	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.7201	5.8156	2	0.0037912	3374	160511_QHF_FH_JSI12i_3	78.516	55.894			1.0019	1.0297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0019	1.0297	NaN	1	0	Median	181130000	91942000	89188000	0	0	0	0	0	0	0	0	0	181130000	91942000	89188000	16738	2094	15869	101463	136901;136902	136901			2	
FSGKHVVFIAQR	1	Acetyl (K)	1429.783	0.78301836	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1		By MS/MS			16	0									2		2			58.162	49.678	2;3	0.0023107	27419	160513_QHF_FH_JSI10Kac_6	60.157	45.711			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5360700	0	5360700	0	0	0	5360700	0	5360700	0	0	0	0	0	0	16739	1979	15870	101464;101465	136903;136904	136904	1999		2	
FSGLPSNDEPILSFSPK	1	Unmodified	1833.9149	0.91487997	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	88.623	87.67	2	0.00019487	75711	160511_QHF_FH_JSI12i_2	71.548	49.502			0.86758	0.96735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86758	0.96735	NaN	1	0	Median	8900100	6013000	2887100	0	0	0	0	0	0	0	0	0	8900100	6013000	2887100	16740	135	15871	101466;101467;101468	136905;136906;136907	136905			3	
FSGNLLVSLLGTWSDTSSGGPAR	0	Unmodified	2321.1652	0.16517443	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.818	92.097	3	1.99E-08	53705	160513_QHF_FH_JSI10Kac_6	84.602	77.156			0.74921	0.86579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74921	0.86579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	190490000	106810000	83681000	0	0	0	190490000	106810000	83681000	0	0	0	0	0	0	16741	1960	15872	101469	136908	136908			1	
FSGVAGEAPSNPSVPVAVSSGPGRGDADSHASMK	1	Unmodified	3224.5157	0.51565322	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.83	53.277	4	0.0097116	44509	160511_QHF_FH_JSI10i_3	27.99	22.024			0.636	0.73331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.636	0.73331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24076000	17257000	6818700	0	0	0	24076000	17257000	6818700	0	0	0	0	0	0	16742	5696	15873	101470	136909	136909			1	
FSGVNEQPPVVLAVK	1	Unmodified	1582.8719	0.87189295	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	70.897	70.135	2	0.00021792	61397	160511_QHF_FH_JSI11i_2	86.114	53.508			0.94172	0.98223	24.557	5	0	Median	1.1243	0.98223	NaN	1	0	Median	0.62701	0.73744	24.548	2	0	Median	1.1858	1.1895	NaN	1	0	Median	0.94172	1.0304	NaN	1	0	Median	114140000	59229000	54913000	18888000	8540400	10348000	42131000	25579000	16552000	33884000	15028000	18856000	19239000	10081000	9157600	16743	3819	15874	101471;101472;101473;101474;101475	136910;136911;136912;136913;136914	136913			3	
FSGWYDADLSPAGHEEAK	1	Unmodified	1978.8697	0.86972069	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	4.68	4	23	7						5	10	8	12	9	61.957	59.947	2;3	1.1044E-159	51993	160511_QHF_FH_JSI11i_2	300.4	287.26			0.98454	1.0105	20.046	32	5	Median	1.0494	0.88768	8.8366	6	2	Median	0.8397	1.0041	8.5779	7	2	Median	1.0602	1.0377	25.726	11	1	Median	1.169	1.26	15.758	8	0	Median	15674000000	7858900000	7815300000	1387500000	602790000	784690000	3101200000	1748200000	1353000000	7807400000	3947600000	3859800000	3378100000	1560300000	1817800000	16744	1144	15875	101476;101477;101478;101479;101480;101481;101482;101483;101484;101485;101486;101487;101488;101489;101490;101491;101492;101493;101494;101495;101496;101497;101498;101499;101500;101501;101502;101503;101504;101505;101506;101507;101508;101509;101510;101511;101512;101513;101514	136915;136916;136917;136918;136919;136920;136921;136922;136923;136924;136925;136926;136927;136928;136929;136930;136931;136932;136933;136934;136935;136936;136937;136938;136939;136940;136941;136942;136943;136944;136945;136946;136947;136948;136949;136950;136951;136952;136953;136954;136955;136956;136957;136958;136959;136960;136961;136962;136963;136964;136965;136966;136967;136968;136969;136970;136971;136972;136973;136974;136975;136976;136977;136978;136979;136980;136981;136982;136983;136984;136985;136986;136987;136988;136989;136990;136991;136992;136993;136994;136995;136996;136997;136998;136999;137000;137001;137002;137003	136969			88	
FSGWYDADLSPAGHEEAKR	1	Acetyl (K)	2176.9814	0.98139641	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		70	61.43	3	5.11E-06	33726	160513_QHF_FH_JSI10Kac_6	146.1	134.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37800000	25733000	12067000	0	0	0	12067000	0	12067000	25733000	25733000	0	0	0	0	16745	1144	15876	101515;101516	137004;137005	137005	1004		2	
FSHDADPEVSYNSIFAMGMVGSGTNNAR	0	Unmodified	2973.3022	0.30215497	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.17	6.84		2	1						3	2	1	2	1	84.903	80.165	3	4.6007E-59	40866	160513_QHF_FH_JSI11Kac_6	183.24	183.03			1.0477	1.1313	27.277	6	1	Median	1.2024	1.0279	54.342	2	1	Median	0.89011	1.0823	NaN	1	0	Median	1.2936	1.2557	8.4812	2	0	Median	0.88626	0.93806	NaN	1	0	Median	164650000	77420000	87233000	60788000	25905000	34883000	20373000	11292000	9081100	62684000	28581000	34103000	20808000	11642000	9165600	16746	2370	15877	101517;101518;101519;101520;101521;101522	137006;137007;137008;137009;137010;137011;137012;137013;137014	137010			9	
FSHDAYFYLGYQEQMR	0	Unmodified	2053.8992	0.89924668	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	74.503	65.489	3	0.0017116	34932	160513_QHF_FH_JSI9Kac_6	66.387	62.483			1.1602	1.1247	21.737	2	0	Median	1.5091	1.3115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89196	0.96443	NaN	1	0	Median	54441000	22463000	31978000	29929000	11054000	18875000	0	0	0	0	0	0	24512000	11409000	13103000	16747	2918	15878	101523;101524	137015	137015			0	
FSHEEIAMATVTALR	0	Unmodified	1674.8399	0.83994089	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		10	8						8	9	6	5	6	69.181	65.527	2;3	3.8456E-56	56870	160511_QHF_FH_JSI12i_2	198.57	161.99			0.91602	0.90276	29.738	23	7	Median	1.0949	0.90276	22.643	7	2	Median	0.70663	0.85733	52.508	6	4	Median	0.88004	0.91181	11.328	5	0	Median	0.94709	1.0025	18.527	5	1	Median	7431500000	3776500000	3655100000	1773700000	857590000	916140000	1583900000	866900000	717050000	2668300000	1435300000	1233000000	1405500000	616680000	788850000	16748	803	15879	101525;101526;101527;101528;101529;101530;101531;101532;101533;101534;101535;101536;101537;101538;101539;101540;101541;101542;101543;101544;101545;101546;101547;101548;101549;101550	137016;137017;137018;137019;137020;137021;137022;137023;137024;137025;137026;137027;137028;137029;137030;137031;137032;137033;137034;137035;137036;137037;137038;137039;137040;137041;137042;137043;137044;137045;137046;137047;137048;137049;137050;137051;137052	137020			36	
FSHEEIAMATVTALR	0	Oxidation (M)	1690.8349	0.83485551	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.9		2							12	3	4	2	5	63.311	54.818	2;3	3.8327E-06	30063	160513_QHF_FH_JSI10Kac_6	112.43	76.47			0.87728	0.91227	20.167	10	2	Median	1.0898	0.92729	18.762	2	0	Median	0.7336	0.9009	23.966	3	1	Median	0.90144	0.87047	34.043	2	1	Median	1.0397	1.1084	21.187	3	0	Plateau	306080000	166490000	139590000	58076000	25098000	32978000	132720000	73936000	58782000	37042000	21010000	16032000	78245000	46450000	31795000	16749	803	15879	101551;101552;101553;101554;101555;101556;101557;101558;101559;101560;101561;101562;101563;101564	137053;137054;137055;137056;137057;137058;137059;137060;137061;137062;137063;137064;137065;137066;137067;137068;137069;137070	137070		316	18	
FSHEEIAMATVTALRR	0	Unmodified	1830.9411	0.94105192	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.12		10	12						9	13	8	6	4	64.173	60.645	2;3;4	2.1594E-19	51083	160511_QHF_FH_JSI10i_3	178.22	166.01			1.0099	0.93807	28.394	29	8	Median	1.2429	0.75802	21.935	11	2	Linear	0.88392	1.0446	33.814	8	2	Median	1.1756	1.1476	19.966	6	3	Median	0.99402	1.0629	17.263	4	1	Median	7382700000	3701400000	3681300000	2792100000	1229400000	1562700000	3451700000	1948600000	1503000000	724100000	308960000	415130000	414810000	214330000	200480000	16750	803	15880	101565;101566;101567;101568;101569;101570;101571;101572;101573;101574;101575;101576;101577;101578;101579;101580;101581;101582;101583;101584;101585;101586;101587;101588;101589;101590;101591;101592;101593;101594;101595	137071;137072;137073;137074;137075;137076;137077;137078;137079;137080;137081;137082;137083;137084;137085;137086;137087;137088;137089;137090;137091;137092;137093;137094;137095;137096;137097;137098;137099;137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116;137117;137118;137119	137079			48	
FSHEEIAMATVTALRR	0	Oxidation (M)	1846.936	0.93596654	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	14.4	4.3			1						7	2	4		2	59.262	51.156	3;4	4.3305E-05	27064	160513_QHF_FH_JSI9Kac_6	83.37	73.031			1.1897	1.0782	24.046	8	1	Median	1.2126	1.0464	2.5784	2	0	Median	1.2353	1.4569	27.794	4	1	Median	NaN	NaN	NaN	0	0	Median	0.92303	1.0149	10.205	2	0	Median	279930000	127730000	152210000	80825000	37020000	43806000	172190000	75758000	96434000	0	0	0	26917000	14948000	11968000	16751	803	15880	101596;101597;101598;101599;101600;101601;101602;101603	137120;137121;137122;137123;137124;137125;137126;137127;137128	137122		316	9	
FSHGTMPLR	0	Unmodified	1044.5175	0.51748454	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			9						2	3	3	3	2	24.861	22.681	2;3	6.9593E-05	18249	160511_QHF_FH_JSI9i_3	83.168	67.538			0.69161	0.7761	60.897	11	2	Median	1.2918	1.0509	121	3	2	Plateau	0.69161	0.82859	32.511	3	0	Median	0.92638	0.9348	16.283	3	0	Median	0.49878	0.51047	24.126	2	0	Median	1715700000	923230000	792490000	620710000	270110000	350590000	385380000	229810000	155560000	402250000	233710000	168540000	307390000	189590000	117800000	16752	5141	15881	101604;101605;101606;101607;101608;101609;101610;101611;101612;101613;101614	137129;137130;137131;137132;137133;137134;137135;137136;137137;137138	137135			10	
FSHLTSLPQQLPSQQLMSK	1	Oxidation (M)	2185.1201	0.1201385	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	61.803	61.205	3	2.3076E-06	54460	160511_QHF_FH_JSI11i_3	86.213	77.03			1.3104	1.2454	13.763	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3104	1.5399	NaN	1	1	Median	1.4991	1.3801	NaN	1	1	Median	1.212	1.1714	NaN	1	0	Median	123550000	46390000	77156000	0	0	0	25872000	10749000	15122000	53347000	15258000	38089000	44328000	20383000	23945000	16753	3132	15882	101615;101616;101617;101618;101619	137139;137140;137141;137142;137143;137144	137140		2201	6	
FSHLTSLPQQLPSQQLMSK	1	Unmodified	2169.1252	0.12522387	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	70.166	69.547	3	3.2817E-10	58089	160511_QHF_FH_JSI10i_3	105.99	102.84			1.0671	1.2112	59.581	7	5	Median	1.7332	1.431	NaN	1	0	Median	0.65959	0.77527	63.097	2	1	Median	0.88294	0.84432	93.263	2	2	Median	0.84971	0.86422	76.894	2	2	Median	1400100000	728700000	671380000	69408000	30817000	38591000	277560000	163270000	114290000	620220000	322620000	297610000	432890000	212000000	220890000	16754	3132	15882	101620;101621;101622;101623;101624;101625;101626	137145;137146;137147;137148;137149;137150;137151;137152;137153	137147			9	
FSHMLLYLK	1	Unmodified	1150.6209	0.62088698	2845	Q52LW3	ARHGAP29	Rho GTPase-activating protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	69.936	61.039	3	8.6769E-06	33272	160513_QHF_FH_JSI10Kac_6	104.17	86.303			0.85314	0.82906	37.166	4	3	Median	0.922	0.79796	NaN	1	1	Median	1.0333	1.2286	NaN	1	1	Median	0.50561	0.49782	NaN	1	0	Median	0.78942	0.86137	NaN	1	1	Median	66611000	29457000	37154000	10676000	3332200	7344100	17882000	6751100	11131000	25428000	12552000	12876000	12624000	6821600	5802900	16755	2845	15883	101627;101628;101629;101630	137154;137155;137156;137157;137158	137158			5	
FSHQGVQLIDFSPCER	0	Unmodified	1918.8996	0.89958103	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.18		2	6						1	2	4	1	2	66.526	64.518	2;3	9.3712E-06	57211	160511_QHF_FH_JSI11i_3	97.214	93.979			1.0177	1.1303	45.426	8	4	Median	2.6496	2.2341	31.232	2	2	Median	1.0494	1.2093	31.394	3	1	Plateau	0.83719	0.76726	NaN	1	0	Median	0.93257	0.98038	10.566	2	1	Median	592230000	278150000	314090000	72410000	24264000	48146000	249300000	115290000	134010000	151790000	83896000	67893000	118740000	54698000	64039000	16756	1867	15884	101631;101632;101633;101634;101635;101636;101637;101638;101639	137159;137160;137161;137162;137163;137164;137165;137166;137167;137168;137169;137170	137160			12	
FSHVAMILGK	1	Unmodified	1101.6005	0.60048589	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	1	2	4	2	53.044	47.919	2;3	0.00023832	40722	160511_QHF_FH_JSI12i_3	79.148	69.096			1.6451	1.6471	80.208	9	9	Median	1.5468	1.313	NaN	1	1	Median	0.84347	1.0083	111.39	2	2	Median	2.3725	2.2222	110.69	4	4	Median	1.5334	1.5418	9.3432	2	2	Median	503690000	229490000	274200000	40480000	20310000	20170000	75556000	45209000	30346000	147900000	52769000	95129000	239760000	111200000	128550000	16757	3854	15885	101640;101641;101642;101643;101644;101645;101646;101647;101648	137171;137172;137173;137174;137175;137176;137177;137178;137179	137176			9	
FSHVAMILGK	1	Oxidation (M)	1117.5954	0.59540051	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				48.194	38.982	3	0.0054814	20766	160513_QHF_FH_JSI9Kac_6	55.084	26.357			0.58907	0.50309	NaN	1	1	Median	0.58907	0.50309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17639000	10480000	7158500	17639000	10480000	7158500	0	0	0	0	0	0	0	0	0	16758	3854	15885	101649	137180	137180		2307	1	
FSHVLQK	1	Unmodified	857.47594	0.4759373	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.566	13.639	3	0.0077146	10586	160511_QHF_FH_JSI12i_3	50.966	26.994			0.25102	0.25344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25102	0.25344	NaN	1	1	Median	51486000	43817000	7669600	0	0	0	0	0	0	0	0	0	51486000	43817000	7669600	16759	5718	15886	101650	137181	137181			1	
FSINGGYLGILEWILGK	1	Unmodified	1879.0244	0.024370842	2431	Q13510	ASAH1	Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.21	96.489	2	6.0632E-06	57033	160513_QHF_FH_JSI10Kac_6	107.73	53.768			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16760	2431	15887	101651	137182	137182			1	
FSIQTMCPIEGEGNIAR	0	Unmodified	1921.9026	0.9026175	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	75.339	74.752	2	9.8462E-16	65677	160511_QHF_FH_JSI11i_2	198.49	167.94			1.0034	1.0588	24.114	4	2	Median	NaN	NaN	NaN	0	0	Median	0.97512	1.105	NaN	1	1	Median	0.93037	0.90018	16.902	2	1	Median	1.3313	1.4328	NaN	1	0	Median	175320000	95581000	79735000	0	0	0	22655000	13365000	9289600	104420000	63195000	41223000	48243000	19021000	29223000	16761	2362	15888	101652;101653;101654;101655;101656	137183;137184;137185;137186;137187;137188;137189	137189			7	
FSISAHGK	1	Unmodified	845.43955	0.43955179	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.49		2	7						6	5	5	2	3	20.269	16.817	2;3	0.00092418	9623	160513_QHF_FH_JSI9Kac_6	78.516	58.73			0.96896	0.95857	25.763	15	1	Median	1.1141	0.95857	8.2943	5	0	Median	0.92167	1.0678	41.244	5	1	Median	1.129	1.087	20.041	2	0	Median	0.74421	0.75302	19.934	3	0	Plateau	5225700000	2659600000	2566100000	1288500000	578050000	710410000	733640000	385510000	348130000	977520000	442170000	535350000	2226100000	1253900000	972220000	16762	3634	15889	101657;101658;101659;101660;101661;101662;101663;101664;101665;101666;101667;101668;101669;101670;101671	137190;137191;137192;137193;137194;137195;137196;137197;137198;137199;137200;137201;137202;137203;137204;137205;137206;137207;137208;137209;137210;137211;137212;137213;137214	137205			25	
FSISPDEDSSSYSSNSDFNYSYPTK	1	Unmodified	2823.1671	0.16714409	4207	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	3	2	2	73.83	73.319	2;3	2.7198E-51	66771	160511_QHF_FH_JSI12i_1	199.49	193.95			1.1414	1.0343	23.146	10	5	Median	1.4724	1.1967	21.947	3	2	Plateau	0.6792	0.82147	0.30671	3	2	Plateau	1.2658	1.2226	19.799	2	1	Median	1.2754	1.3115	8.2614	2	0	Median	394610000	192670000	201950000	89350000	41394000	47957000	143690000	85289000	58397000	76361000	28305000	48056000	85216000	37679000	47537000	16763	4207	15890	101672;101673;101674;101675;101676;101677;101678;101679;101680;101681	137215;137216;137217;137218;137219;137220;137221;137222;137223;137224;137225;137226;137227;137228;137229;137230	137219			16	
FSIYPPIPGEESSLR	0	Unmodified	1690.8566	0.85663681	2110	P82912	MRPS11	28S ribosomal protein S11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	84.98	84.271	2	0.00021938	72989	160511_QHF_FH_JSI12i_2	103.91	80.534			0.98009	1.0553	6.4236	4	1	Median	1.2387	1.0619	NaN	1	0	Median	0.76613	0.9374	NaN	1	0	Median	0.99158	1.0488	NaN	1	0	Median	0.96873	1.08	NaN	1	1	Median	111500000	55774000	55726000	20954000	8740800	12213000	23472000	12939000	10533000	39230000	20480000	18750000	27844000	13613000	14230000	16764	2110	15891	101682;101683;101684;101685;101686;101687	137231;137232;137233;137234;137235;137236;137237;137238;137239;137240;137241;137242	137231			12	
FSKLVLLTASK	2	Acetyl (K)	1247.7489	0.74892426	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.184	72.869	2	0.0056021	40139	160513_QHF_FH_JSI11Kac_6	69.864	60.276			1.1984	1.1692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1984	1.1692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31754000	16947000	14806000	0	0	0	0	0	0	31754000	16947000	14806000	0	0	0	16765	4010	15892	101688	137243	137243	3029		1	
FSKPIGDFK	2	Acetyl (K)	1079.5651	0.56514624	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.745							3	2	1		2	2	2	66.069	55.481	2	0.00057515	30549	160513_QHF_FH_JSI12Kac_4	98.048	77.423			0.84056	0.92997	22.727	6	0	Median	NaN	NaN	NaN	0	0	Median	0.71161	0.85196	5.0183	2	0	Median	0.77907	0.7792	32.389	2	0	Median	1.0193	1.1192	9.2057	2	0	Median	204210000	109850000	94356000	0	0	0	82891000	44790000	38100000	26014000	14639000	11375000	95304000	50424000	44880000	16766	1684	15893	101689;101690;101691;101692;101693;101694	137244;137245;137246;137247;137248	137247	1703		5	
FSKSATSPEGK	2	Acetyl (K)	1179.5772	0.57716749	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	1.08					3	4	4	4		3	4	4	4	26.983	17.619	2	2.4455E-14	1260	160513_QHF_FH_JSI9Kac_4	149.96	93.229			0.84552	0.85966	29.801	15	0	Median	1.0821	0.93177	6.4687	3	0	Plateau	0.92162	1.0967	5.8877	4	0	Median	0.52798	0.52125	5.6136	4	0	Median	0.80897	0.86121	15.693	4	0	Median	2493800000	1478700000	1015100000	631650000	326550000	305110000	487760000	268490000	219270000	925820000	639360000	286460000	448530000	244280000	204250000	16767	1033	15894	101695;101696;101697;101698;101699;101700;101701;101702;101703;101704;101705;101706;101707;101708;101709	137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263	137251	852;853		15	
FSKYMPNVK	2	Acetyl (K);Oxidation (M)	1170.5743	0.57433072	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		46.587	36.157	2	0.013934	20437	160513_QHF_FH_JSI11Kac_5	48.423	34.217			0.2744	0.26898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2744	0.26898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12751000	11708000	1042600	0	0	0	0	0	0	12751000	11708000	1042600	0	0	0	16768	2474	15895	101710	137264	137264	2493	1966	1	
FSKYMPNVK	2	Acetyl (K)	1154.5794	0.57941609	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		59.851	48.955	2	0.0149	26886	160513_QHF_FH_JSI11Kac_5	66.299	54.53			0.013387	0.013113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.013387	0.013113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13009000	12914000	95101	0	0	0	0	0	0	13009000	12914000	95101	0	0	0	16769	2474	15895	101711	137265;137266	137266	2493		2	
FSLAEMHFQK	1	Unmodified	1236.5961	0.59612879	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							2	1	1	1	62.149	61.434	3	0.00053035	52732	160511_QHF_FH_JSI12i_3	73.499	63.844			2.781	2.347	34.804	5	5	Median	2.9952	2.484	8.0226	2	2	Median	3.0549	3.7341	NaN	1	1	Median	1.6361	1.547	NaN	1	1	Median	1.7188	1.7512	NaN	1	1	Median	978540000	284050000	694490000	159410000	32918000	126490000	136990000	25530000	111460000	266640000	105090000	161540000	415510000	120510000	295000000	16770	1347	15896	101712;101713;101714;101715;101716	137267;137268;137269;137270;137271	137271			5	
FSLDAVSLK	1	Unmodified	978.5386	0.53859714	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	69.894	69.003	2	0.0015942	61364	160511_QHF_FH_JSI10i_2	68.371	42.262			0.93737	0.9239	9.9116	4	0	Median	1.0343	0.89874	NaN	1	0	Median	0.69445	0.8345	NaN	1	0	Median	0.95527	0.94977	NaN	1	0	Median	0.9198	1.0559	NaN	1	0	Median	276590000	153810000	122780000	58106000	34204000	23902000	64888000	42993000	21895000	87836000	43903000	43933000	65758000	32707000	33050000	16771	5725	15897	101717;101718;101719;101720	137272;137273	137273			2	
FSLDDLLTNVMLYWTTGTIISSQR	0	Unmodified	2773.3997	0.3996674	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.47	99.753	3	2.8693E-29	59097	160513_QHF_FH_JSI10Kac_6	192.19	176.07			0.93173	1.0891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93173	1.0891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196100000	119310000	76798000	0	0	0	196100000	119310000	76798000	0	0	0	0	0	0	16772	862	15898	101721	137274	137274			1	
FSLFAGGMLR	0	Unmodified	1097.5692	0.56918576	4475	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	2	2	2	1	85.399	80.553	2	3.7939E-50	43026	160513_QHF_FH_JSI10Kac_6	205.7	151.17			1.3878	0.96406	33.894	6	0	Linear	0.94279	0.80247	57.185	2	0	Median	0.5607	0.66309	NaN	1	0	Median	1.0188	0.96406	17.599	2	0	Median	1.1361	1.2128	NaN	1	0	Median	969730000	454070000	515670000	447270000	201500000	245760000	15804000	11139000	4664900	340020000	163080000	176930000	166640000	78338000	88306000	16773	4475	15899	101722;101723;101724;101725;101726;101727;101728	137275;137276;137277;137278;137279;137280	137280			6	
FSLFAGGMLR	0	Oxidation (M)	1113.5641	0.56410038	4475	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	77.27	69.167	2	0.001606	38352	160513_QHF_FH_JSI10Kac_6	76.478	65.313			0.97515	1.0543	6.5056	3	0	Median	1.1005	0.96604	NaN	1	0	Median	0.91219	1.097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97515	1.0543	NaN	1	0	Median	248190000	137940000	110250000	79549000	46011000	33538000	145940000	79572000	66372000	0	0	0	22694000	12357000	10336000	16774	4475	15899	101729;101730;101731	137281;137282;137283;137284	137284		2481	4	
FSLFSAAVR	0	Unmodified	996.53927	0.53926584	4055	Q96ER9	CCDC51	Coiled-coil domain-containing protein 51	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.769	71.292	2	0.0038069	58687	160511_QHF_FH_JSI9i_3	58.716	18.618			1.5505	1.2695	NaN	1	0	Median	1.5505	1.2695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35688000	15211000	20477000	35688000	15211000	20477000	0	0	0	0	0	0	0	0	0	16775	4055	15900	101732	137285	137285			1	
FSLFTAVHK	1	Unmodified	1048.5706	0.57056597	5224	Q9P2T1	GMPR2	GMP reductase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	4	3	3	3	63.936	59.267	2;3	4.8165E-07	50369	160511_QHF_FH_JSI12i_3	128.38	101.13			0.90173	0.97021	86.927	13	5	Median	1.2205	1.0276	39.548	4	2	Median	0.85056	0.97021	11.919	3	1	Median	1.1388	1.0583	178.04	3	1	Plateau	0.8876	0.94061	23.613	3	1	Median	2078900000	1152500000	926360000	520560000	230270000	290300000	454630000	278380000	176260000	477690000	299710000	177980000	625970000	344150000	281820000	16776	5224	15901	101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744;101745	137286;137287;137288;137289;137290;137291;137292;137293;137294;137295;137296;137297;137298;137299;137300	137298			15	
FSLIDLAGNER	0	Unmodified	1233.6354	0.63535107	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	81.18	80.62	2	6.6129E-06	71672	160511_QHF_FH_JSI10i_2	110.14	79.062			0.92093	0.94221	17.576	6	0	Median	1.08	0.94178	NaN	1	0	Median	0.77538	0.94263	NaN	1	0	Median	0.95017	0.91718	18.833	2	0	Median	0.98678	1.0346	32.093	2	0	Median	305090000	157770000	147320000	36973000	15905000	21068000	36796000	20001000	16795000	128940000	70314000	58629000	102380000	51552000	50828000	16777	95	15902	101746;101747;101748;101749;101750;101751	137301;137302;137303;137304;137305;137306;137307;137308;137309	137306			8	
FSLQDPPNK	1	Unmodified	1044.524	0.52400971	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.67	4.64	2	3					1			1	2	3		39.747	37.06	2	0.0031367	31701	160511_QHF_FH_JSI11i_2	71.692	50.164			0.92104	0.91963	37.461	5	4	Median	0.73341	0.61512	NaN	1	1	Median	1.0408	1.2403	47.972	2	2	Median	0.94699	0.94738	4.2045	2	1	Median	NaN	NaN	NaN	0	0	Median	286010000	142600000	143400000	38004000	21156000	16848000	156040000	80018000	76019000	91964000	41427000	50537000	0	0	0	16778	440	15903	101752;101753;101754;101755;101756;101757	137310;137311;137312;137313;137314;137315	137313			6	
FSLSGGYWNSVSDTAK	1	Unmodified	1717.7948	0.79476484	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	3	3	2	75.718	72.936	2	3.4033E-65	66038	160511_QHF_FH_JSI11i_3	226.59	219.46			0.90564	0.92905	25.16	11	0	Median	0.90564	0.76315	40.955	3	0	Median	0.62206	0.719	27.868	3	0	Plateau	1.1337	1.0541	15.847	3	0	Plateau	0.88679	0.94096	1.8021	2	0	Median	837630000	430050000	407570000	84593000	42530000	42064000	138580000	76511000	62071000	285040000	132190000	152850000	329420000	178830000	150590000	16779	1755	15904	101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768	137316;137317;137318;137319;137320;137321;137322;137323;137324;137325;137326;137327;137328;137329;137330;137331;137332;137333;137334	137317			19	
FSLVDLAGNER	0	Unmodified	1219.6197	0.619701	4300	Q99661;Q8N4N8	KIF2C;KIF2B	Kinesin-like protein KIF2C;Kinesin-like protein KIF2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	74.821	74.202	2	1.6001E-05	66102	160511_QHF_FH_JSI11i_3	105.2	66.233			1.1554	1.0803	16.941	5	0	Median	1.1554	0.97688	NaN	1	0	Median	0.82098	1.0045	NaN	1	0	Median	1.1493	1.0803	NaN	1	0	Median	1.3011	1.379	0.21817	2	0	Median	305880000	158080000	147790000	52638000	26383000	26255000	83420000	58300000	25119000	59014000	28394000	30620000	110800000	45006000	65798000	16780	4300	15905	101769;101770;101771;101772;101773;101774	137335;137336;137337;137338;137339	137335			5	
FSLVGIGGQDLNDGNQTLTLALVWQLMR	0	Unmodified	3058.591	0.59099042	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.85	95.126	3	6.0308E-59	56063	160513_QHF_FH_JSI10Kac_6	181.37	169.17			0.71957	0.86327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71957	0.86327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	471710000	241540000	230180000	0	0	0	471710000	241540000	230180000	0	0	0	0	0	0	16781	1039	15906	101775	137340	137340			1	
FSLVPHNYGLVLYENK	1	Unmodified	1891.9832	0.98323431	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	3	6	4	3	83.976	81.867	2;3	2.5874E-52	72908	160511_QHF_FH_JSI12i_3	192.24	182.32			0.99757	0.98972	18.832	15	4	Median	1.2269	1.0401	19.193	3	0	Median	0.82322	0.98972	26.172	5	3	Median	1.0103	1.2009	17.484	4	0	Linear	1.1005	1.115	12.404	3	1	Plateau	2169300000	1095300000	1074000000	325170000	145120000	180050000	392900000	219230000	173670000	618680000	325110000	293570000	832540000	405790000	426750000	16782	4260	15907	101776;101777;101778;101779;101780;101781;101782;101783;101784;101785;101786;101787;101788;101789;101790;101791	137341;137342;137343;137344;137345;137346;137347;137348;137349;137350;137351;137352;137353;137354;137355;137356;137357;137358;137359;137360;137361;137362;137363;137364;137365;137366;137367;137368;137369;137370;137371;137372;137373;137374	137370			34	
FSLYFLAYEDK	1	Unmodified	1394.6758	0.6758189	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.92		5	1						6	3	3	3	3	93.949	89.857	2	4.988E-20	44952	160513_QHF_FH_JSI11Kac_6	169.37	146.05			0.99213	0.99046	37.649	12	4	Median	1.1452	0.96003	12.606	3	2	Plateau	1.0038	1.1815	10.4	3	1	Plateau	0.75929	0.71989	25.101	3	0	Plateau	0.9806	1.0226	61.454	3	1	Plateau	4094200000	2098100000	1996100000	1058500000	439410000	619050000	1266800000	713480000	553310000	952830000	539680000	413150000	816090000	405510000	410570000	16783	2221	15908	101792;101793;101794;101795;101796;101797;101798;101799;101800;101801;101802;101803	137375;137376;137377;137378;137379;137380;137381;137382;137383;137384;137385;137386;137387;137388;137389;137390;137391;137392;137393;137394;137395;137396;137397;137398;137399;137400;137401;137402;137403;137404	137380			30	
FSMALCDQEK	1	Unmodified	1227.5264	0.52639425	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		46.977	45.922	2	1.0222E-05	39580	160511_QHF_FH_JSI11i_2	106.2	81.977			0.56903	0.48774	NaN	1	1	Median	0.56903	0.48774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20906000	13406000	7500100	20906000	13406000	7500100	0	0	0	0	0	0	0	0	0	16784	1604	15909	101804;101805	137405;137406	137406			2	
FSMGFIDSIIAK	1	Unmodified	1327.6846	0.68460945	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.57	101.59	2	0.0045543	88258	160511_QHF_FH_JSI12i_3	55.806	43.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16785	1304	15910	101806	137407	137407			1	
FSMGSVVAGLLK	1	Unmodified	1207.6635	0.66348007	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	96.235	92.04	2	9.8636E-32	83671	160511_QHF_FH_JSI10i_3	194.06	178.8			0.97028	0.97235	12.373	8	2	Median	1.1645	0.97235	0.25951	2	1	Median	0.75057	0.86544	12.165	2	1	Median	0.95205	0.88514	24.841	2	0	Median	0.97028	1	3.0059	2	0	Median	2493300000	1165000000	1328300000	825870000	327290000	498570000	468950000	265680000	203280000	532680000	239220000	293460000	665810000	332830000	332980000	16786	4777	15911	101807;101808;101809;101810;101811;101812;101813;101814	137408;137409;137410;137411;137412;137413;137414;137415;137416;137417;137418;137419	137410			12	
FSMNPFYEPNSPIR	0	Unmodified	1697.7872	0.78717704	951	P0DI82;P0DI81	TRAPPC2B;TRAPPC2	Trafficking protein particle complex subunit 2B;Trafficking protein particle complex subunit 2	yes	no	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		81.141	80.831	2	0.00033129	71175	160511_QHF_FH_JSI11i_2	101.35	86.205			1.0486	1.0081	48.893	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0486	1.0081	48.893	2	2	Median	NaN	NaN	NaN	0	0	Median	73435000	31957000	41478000	0	0	0	0	0	0	73435000	31957000	41478000	0	0	0	16787	951	15912	101815;101816	137420;137421	137421			2	
FSMPGFK	1	Unmodified	812.3891	0.38909613	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.52	3	4	4					2	4	4	5	4	4	61.732	57.846	2	0.0019752	51124	160511_QHF_FH_JSI11i_3	114.54	104.79			1.0549	1.037	13.412	17	0	Median	1.1213	0.95515	8.1148	4	0	Median	0.81386	0.96682	5.5848	5	0	Median	1.1266	1.0655	14.359	4	0	Median	1.0747	1.1199	21.136	4	0	Median	22057000000	10442000000	11615000000	3369500000	1564900000	1804500000	4867000000	2567700000	2299300000	7365900000	3248700000	4117200000	6454600000	3061100000	3393500000	16788	2286	15913	101817;101818;101819;101820;101821;101822;101823;101824;101825;101826;101827;101828;101829;101830;101831;101832;101833	137422;137423;137424;137425;137426;137427;137428;137429;137430;137431;137432;137433;137434;137435;137436;137437;137438;137439;137440;137441;137442;137443;137444;137445;137446;137447;137448;137449;137450;137451;137452;137453;137454;137455;137456;137457;137458;137459;137460;137461;137462;137463	137424			42	
FSMPGFK	1	Oxidation (M)	828.38401	0.38401075	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	36.65	27.588	2	0.055667	14552	160513_QHF_FH_JSI12Kac_6	46.37	38.699			1.1748	1.1287	9.9441	2	0	Median	1.217	1.052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1341	1.2109	NaN	1	0	Median	103620000	42022000	61597000	48350000	20060000	28290000	0	0	0	0	0	0	55269000	21962000	33307000	16789	2286	15913	101834;101835	137464	137464			1	
FSMPGFKGEGPDVDVNLPK	2	Unmodified	2032.9928	0.99281272	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	81.573	81.005	3	2.5651E-11	70271	160511_QHF_FH_JSI12i_3	138.75	127.63			0.8795	0.92211	5.2877	5	0	Median	0.98433	0.82992	NaN	1	0	Median	0.75657	0.89607	5.1045	2	0	Median	0.95895	0.93579	NaN	1	0	Median	0.8795	0.92211	NaN	1	0	Median	1463000000	721640000	741350000	92641000	43818000	48822000	262250000	138860000	123390000	556650000	246300000	310350000	551450000	292670000	258790000	16790	2286	15914	101836;101837;101838;101839;101840	137465;137466;137467;137468;137469;137470;137471;137472	137472			8	
FSMPGFKGEGPDVDVNLPK	2	Oxidation (M)	2048.9877	0.98772734	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	1				By MS/MS	3	0			2										2	64.725	64.435	3	0.00020342	55838	160511_QHF_FH_JSI12i_3	63.918	54.337			0.91155	0.92134	32.983	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91155	0.92134	32.983	2	0	Median	86894000	48993000	37901000	0	0	0	0	0	0	0	0	0	86894000	48993000	37901000	16791	2286	15914	101841;101842	137473;137474	137474		1885	2	
FSMPGFKGEGPDVDVSLPK	2	Unmodified	2005.9819	0.98191368	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	83.479	82.752	3	1.7782E-05	71780	160511_QHF_FH_JSI12i_3	80.238	64.419			1.0669	1.1286	4.9126	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95163	1.0901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1961	1.1685	NaN	1	0	Median	177750000	89745000	88003000	0	0	0	49382000	24761000	24622000	0	0	0	128370000	64985000	63382000	16792	2286	15915	101843;101844	137475;137476;137477	137476			3	
FSMPGFKGEGPDVDVTLPK	2	Unmodified	2019.9976	0.99756374	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	83.821	83.726	3	2.7619E-06	72676	160511_QHF_FH_JSI12i_3	94.45	85.849			1.2233	1.1945	0.67472	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2985	1.2003	NaN	1	0	Median	1.1525	1.1889	NaN	1	0	Median	295770000	121020000	174750000	0	0	0	0	0	0	113560000	42689000	70868000	182220000	78331000	103880000	16793	2286	15916	101845;101846	137478;137479	137479			2	
FSMPGFKGEGPEVDMNLPK	2	Unmodified	2078.9805	0.98053347	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	82.253	81.756	3	6.9936E-05	70973	160511_QHF_FH_JSI12i_3	85.087	69.321			1.5042	1.4413	14.952	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0006	1.1383	NaN	1	0	Median	1.3172	1.2149	NaN	1	1	Median	1.5042	1.5141	NaN	1	1	Median	349760000	164410000	185350000	0	0	0	35823000	20489000	15335000	140080000	61292000	78793000	173850000	82627000	91223000	16794	2286	15917	101847;101848;101849	137480;137481;137482;137483	137483			4	
FSMPGFKGEGPEVDVK	2	Unmodified	1722.8287	0.8287075	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	66.887	66.591	3	0.0020816	57440	160511_QHF_FH_JSI12i_3	59.513	46.1			1.9508	1.9852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9508	1.9852	NaN	1	1	Median	178570000	70096000	108470000	0	0	0	0	0	0	0	0	0	178570000	70096000	108470000	16795	2286	15918	101850	137484	137484			1	
FSMPGFKGEGPEVDVNLPK	2	Unmodified	2047.0085	0.0084627814	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	82.04	81.537	3	6.1408E-11	70690	160511_QHF_FH_JSI12i_3	135.08	121.62			1.0678	1.07	15.721	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1701	1.3506	NaN	1	1	Median	1.0422	1.0012	NaN	1	0	Median	1.0678	1.07	NaN	1	0	Median	520530000	258070000	262460000	0	0	0	115040000	54720000	60324000	177600000	83116000	94485000	227890000	120230000	107660000	16796	2286	15919	101851;101852;101853	137485;137486;137487;137488;137489;137490	137489			6	
FSMPGFKGEGPEVDVTLPK	2	Unmodified	2034.0132	0.013213808	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	84.406	84.32	3	3.61E-18	73310	160511_QHF_FH_JSI12i_3	157.51	144.8			1.0773	1.0527	16.231	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0165	0.93852	NaN	1	0	Median	1.1418	1.1807	NaN	1	0	Median	341050000	160350000	180700000	0	0	0	0	0	0	135630000	71786000	63844000	205420000	88568000	116860000	16797	2286	15920	101854;101855	137491;137492;137493;137494	137494			4	
FSMPSLK	1	Unmodified	808.41531	0.41531088	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	56.333	55.579	2	0.010719	48176	160511_QHF_FH_JSI11i_2	73.616	56.689			0.82958	0.84237	11.472	5	1	Median	1.0226	0.86621	NaN	1	0	Median	0.67321	0.83514	NaN	1	0	Median	0.82407	0.81279	5.0549	2	1	Median	0.9455	1.0605	NaN	1	0	Median	1929900000	1056400000	873450000	242850000	104230000	138620000	326660000	202480000	124170000	1088200000	602660000	485570000	272120000	147030000	125090000	16798	2286	15921	101856;101857;101858;101859;101860	137495;137496;137497;137498;137499;137500;137501;137502;137503;137504	137501			10	
FSMVVQDGIVK	1	Unmodified	1221.6427	0.64274463	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	64.662	64.211	2	2.0614E-06	55845	160511_QHF_FH_JSI11i_2	118.4	93.884			0.73936	0.76329	3.2811	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73137	0.78121	NaN	1	1	Median	0.74744	0.74579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91885000	54104000	37781000	0	0	0	8751100	6001300	2749800	83134000	48103000	35031000	0	0	0	16799	1335	15922	101861;101862;101863	137505;137506;137507	137507			3	
FSNDDSSSYDKPITFLSLK	2	Unmodified	2163.0372	0.037179952	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	79.688	79.447	3	0.0011947	68984	160511_QHF_FH_JSI12i_3	52.612	36.846			1.6287	1.649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6287	1.649	NaN	1	1	Median	35048000	16341000	18707000	0	0	0	0	0	0	0	0	0	35048000	16341000	18707000	16800	3367	15923	101864	137508	137508			1	
FSNISAAK	1	Unmodified	836.43922	0.43921744	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.4	3	2	2				3	5		3	3	3	6	21.001	15.938	2	0.0060248	10774	160513_QHF_FH_JSI11Kac_4	82.279	37.587			1.7721	1.9441	103.28	15	15	Median	0.51822	0.43807	133.57	3	3	Median	1.8662	2.2178	139	3	3	Median	1.7721	1.7456	107.2	3	3	Median	1.8334	1.9713	96.226	6	6	Median	3347300000	1909000000	1438300000	229780000	129440000	100350000	380120000	285630000	94489000	238550000	127900000	110650000	2498900000	1366000000	1132900000	16801	1722	15924	101865;101866;101867;101868;101869;101870;101871;101872;101873;101874;101875;101876;101877;101878;101879	137509;137510;137511;137512;137513;137514;137515;137516;137517;137518;137519;137520;137521;137522;137523	137518			15	
FSNLVLQALLVLLK	1	Unmodified	1569.9858	0.98580049	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			5						10	3	5	5	2	104.1	98.811	2;3	2.4456E-143	54120	160513_QHF_FH_JSI11Kac_6	268.98	248.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16802	1586	15925	101880;101881;101882;101883;101884;101885;101886;101887;101888;101889;101890;101891;101892;101893;101894	137524;137525;137526;137527;137528;137529;137530;137531;137532;137533;137534;137535;137536;137537;137538	137528			15	
FSNSIPQSQTGNSETATPTNVDLPQVIPK	1	Unmodified	3069.5255	0.52547285	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	79.898	79.488	3	2.1457E-06	72282	160511_QHF_FH_JSI11i_1	52.329	46.235			0.93761	0.79438	21.735	5	1	Median	0.93761	0.75445	NaN	1	0	Median	0.77231	0.89089	39.748	2	1	Median	0.96196	0.92831	NaN	1	0	Median	0.77625	0.79438	NaN	1	0	Median	299950000	156650000	143300000	60397000	30409000	29988000	91217000	49581000	41636000	79684000	42444000	37239000	68656000	34220000	34436000	16803	1580	15926	101895;101896;101897;101898;101899;101900	137539;137540;137541;137542;137543;137544;137545	137539			6	
FSNTGEDWYVLVGVAK	1	Unmodified	1783.8781	0.87810054	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.71	3	9							3	3	5	4	3	92.023	90.228	2;3	8.7848E-44	45066	160513_QHF_FH_JSI10Kac_6	233.24	200.71			0.96993	0.93601	29.911	10	6	Median	1.0642	0.96075	24.431	3	2	Median	0.76564	0.91192	33.059	3	1	Plateau	1.0345	1.05	NaN	1	0	Median	0.91983	1.0048	28.905	3	3	Plateau	602930000	319080000	283860000	146590000	72965000	73629000	174110000	99415000	74695000	83987000	39304000	44683000	198240000	107390000	90849000	16804	2665	15927	101901;101902;101903;101904;101905;101906;101907;101908;101909;101910;101911;101912;101913;101914;101915	137546;137547;137548;137549;137550;137551;137552;137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563;137564;137565;137566;137567	137567			22	
FSNTLELK	1	Unmodified	950.5073	0.50729701	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	41.369	40.407	2	0.014788	34504	160511_QHF_FH_JSI12i_2	51.066	23.929			0.89623	0.90967	12.271	4	0	Median	1.1036	0.97342	NaN	1	0	Median	0.67631	0.81662	NaN	1	0	Median	0.84605	0.85009	NaN	1	0	Median	0.9494	1.0654	NaN	1	0	Median	553700000	276730000	276970000	100800000	47257000	53542000	92946000	50220000	42726000	198800000	90233000	108570000	161150000	89022000	72127000	16805	2332	15928	101916;101917;101918;101919	137568;137569;137570;137571	137568			4	
FSNVYHLSIHISK	1	Unmodified	1543.8147	0.81471242	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									3	1			2	64.38	54.807	4	0.00024024	29037	160513_QHF_FH_JSI9Kac_6	72.209	66.716			0.47286	0.40387	107.15	3	1	Plateau	0.47286	0.40387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0347	2.2458	57.776	2	1	Median	49708000	22170000	27538000	25152000	16668000	8484300	0	0	0	0	0	0	24555000	5502000	19053000	16806	4598	15929	101920;101921;101922	137572;137573;137574	137572			2	
FSPAGPILSIR	0	Unmodified	1156.6604	0.66044361	1009;4688	P11940;Q4VXU2;Q9H361	PABPC1;PABPC1L;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	71.662	70.87	2	2.667E-07	62604	160511_QHF_FH_JSI9i_2	120.99	51.556			0.83868	0.84978	11.328	9	0	Median	1.1587	0.95063	18.612	2	0	Median	0.76384	0.90101	8.2775	2	0	Median	0.99103	0.93098	11.765	3	0	Median	0.75198	0.79989	3.848	2	0	Median	6482600000	3385100000	3097500000	1342000000	623620000	718370000	1603700000	919540000	684140000	1881000000	964370000	916600000	1656000000	877600000	778410000	16807	1009;4688	15930	101923;101924;101925;101926;101927;101928;101929;101930;101931	137575;137576;137577;137578;137579;137580;137581;137582;137583;137584;137585;137586;137587;137588;137589;137590;137591	137585			17	
FSPAGPVLSIR	0	Unmodified	1142.6448	0.64479354	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	64.601	63.738	2	2.2746E-05	56576	160511_QHF_FH_JSI10i_2	101.65	80.346			0.91894	0.94997	12.338	8	0	Median	1.2322	1.0205	26.315	2	0	Median	0.8785	1.0367	8.0218	2	0	Median	0.91894	0.90964	3.8465	2	0	Median	0.86419	0.92762	5.6543	2	0	Median	3120400000	1584700000	1535700000	517220000	242550000	274670000	851590000	467080000	384510000	951340000	439680000	511660000	800250000	435420000	364820000	16808	2385	15931	101932;101933;101934;101935;101936;101937;101938;101939	137592;137593;137594;137595;137596;137597;137598;137599;137600;137601;137602;137603;137604;137605;137606	137604			15	
FSPDGELYASGSEDGTLR	0	Unmodified	1899.8487	0.8486509	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	12	4								4	4	5	3	59.195	58.481	2;3	6.3217E-31	53016	160511_QHF_FH_JSI11i_1	237.32	229.95			0.98322	1.0219	24.149	13	5	Median	1.1177	0.91431	17.604	3	1	Median	0.78643	0.92804	39.136	4	2	Median	1.047	1.0219	18.155	3	2	Median	0.97003	1.0319	6.7473	3	0	Plateau	1768900000	876580000	892340000	424330000	178100000	246230000	452150000	228120000	224030000	478130000	246480000	231650000	414310000	223880000	190430000	16809	5595	15932	101940;101941;101942;101943;101944;101945;101946;101947;101948;101949;101950;101951;101952;101953;101954;101955	137607;137608;137609;137610;137611;137612;137613;137614;137615;137616;137617;137618;137619;137620;137621;137622;137623;137624;137625;137626;137627;137628;137629;137630;137631;137632	137608			26	
FSPDGNR	0	Unmodified	791.35622	0.3562161	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	9.8724	9.5068	2	0.0019712	7404	160511_QHF_FH_JSI10i_2	114.59	91.549			1.0264	1.0085	11.811	6	2	Median	1.1883	1.0172	NaN	1	0	Median	0.74204	0.8932	NaN	1	0	Median	1.072	1.0439	12.388	3	2	Median	0.87896	0.94469	NaN	1	0	Median	1327200000	636660000	690550000	177140000	82589000	94549000	146530000	90940000	55589000	765900000	333010000	432880000	237650000	130120000	107530000	16810	472	15933	101956;101957;101958;101959;101960;101961	137633;137634;137635;137636;137637;137638	137638			6	
FSPFPVQDRPESSLVFK	1	Unmodified	1979.0153	0.015262719	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	3	2	80.151	79.449	2;3	1.2611E-05	70037	160511_QHF_FH_JSI11i_2	67.646	62.351			0.85665	0.84021	28.338	9	0	Median	0.86589	0.7204	34.883	2	0	Median	0.85665	0.99029	44.725	3	0	Median	0.88512	0.84021	6.0249	3	0	Median	0.82034	0.83682	NaN	1	0	Median	2468800000	1300900000	1167900000	356420000	171870000	184550000	579450000	295950000	283500000	926310000	463020000	463300000	606610000	370040000	236570000	16811	5474	15934	101962;101963;101964;101965;101966;101967;101968;101969;101970;101971	137639;137640;137641;137642;137643;137644;137645;137646;137647;137648;137649;137650	137645			12	
FSPGAHYLLTGSYDMK	1	Unmodified	1785.8396	0.83960654	634	O94967	WDR47	WD repeat-containing protein 47	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	63.745	63.602	3	0.033077	54990	160511_QHF_FH_JSI12i_3	40.856	35.965			0.98775	0.9861	9.0707	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98095	0.92484	NaN	1	0	Median	0.99461	1.0514	NaN	1	0	Median	118220000	60097000	58122000	0	0	0	0	0	0	59811000	26413000	33398000	58408000	33684000	24724000	16812	634	15935	101972;101973	137651	137651			0	
FSPGAPGGSGSQPNQK	1	Unmodified	1514.7114	0.71136956	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			2	3	2	5	21.923	19.854	2	1.2788E-05	17025	160511_QHF_FH_JSI11i_1	119.39	105.79			1.0847	1.014	32.554	11	2	Median	1.119	0.93296	7.158	2	0	Median	0.66885	0.79193	60.356	3	1	Plateau	1.021	1.0247	29.082	2	0	Median	1.0619	1.1134	20.912	4	1	Median	767110000	380740000	386370000	156590000	68513000	88075000	179030000	101770000	77261000	205410000	96381000	109030000	226090000	114080000	112010000	16813	2723	15936	101974;101975;101976;101977;101978;101979;101980;101981;101982;101983;101984;101985	137652;137653;137654;137655;137656;137657;137658;137659;137660;137661;137662;137663;137664;137665;137666;137667;137668;137669;137670	137652			19	
FSPHFLDWAAFGVMTLPSIGIPLLLWYSSK	1	Unmodified	3392.7672	0.76716387	1560	P43308	SSR2	Translocon-associated protein subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		10.8	6.37			2						3		4	1		105.37	102.48	3;4	2.8848E-30	58297	160513_QHF_FH_JSI10Kac_6	132.78	126.29			0.75205	0.90555	15.156	4	2	Median	NaN	NaN	NaN	0	0	Median	0.77805	0.93097	4.6649	3	1	Median	0.71085	0.69009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	448980000	270300000	178680000	0	0	0	445490000	267700000	177790000	3496800	2599000	897830	0	0	0	16814	1560	15937	101986;101987;101988;101989;101990	137671;137672;137673;137674;137675;137676	137673			6	
FSPIPFPPLSYK	1	Unmodified	1391.7489	0.74892426	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	99.071	98.919	2	0.011147	85155	160511_QHF_FH_JSI12i_2	49.35	37.304			0.99228	1.149	25.099	4	1	Median	0.85658	0.74162	NaN	1	0	Median	0.85438	1.0548	NaN	1	0	Median	1.2756	1.274	NaN	1	1	Median	1.1495	1.2515	NaN	1	0	Median	135520000	59104000	76411000	30163000	12725000	17438000	28934000	14609000	14325000	51151000	21841000	29310000	25267000	9929300	15338000	16815	3101	15938	101991;101992;101993;101994	137677;137678;137679;137680;137681;137682;137683	137677			7	
FSPLTTNLINLLAENGR	0	Unmodified	1872.0105	0.010511692	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			101.91	101.76	3	0.00078729	84414	160511_QHF_FH_JSI10i_3	61.167	46.592			0.46564	0.51436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46564	0.51436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30270000	22886000	7384700	0	0	0	30270000	22886000	7384700	0	0	0	0	0	0	16816	1612	15939	101995	137684	137684			1	
FSPNGEWLASSSADK	1	Unmodified	1594.7264	0.72635092	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	57.66	57.281	2	0.00082578	49364	160511_QHF_FH_JSI12i_3	65.395	46.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16817	1971	15940	101996;101997	137685;137686	137686			2	
FSPNSSNPIIVSCGWDK	1	Unmodified	1906.8883	0.88834765	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.09	3.74	6	10	5					2		3	6	7	7	72.667	71.024	2;3	1.9262E-65	62852	160511_QHF_FH_JSI11i_2	228.19	197			1.028	1.0713	33.512	20	5	Median	1.2724	1.0839	2.1064	2	1	Median	0.87024	1.0442	16.939	6	1	Median	0.88775	0.8518	51.467	7	1	Median	1.2606	1.3587	11.323	5	2	Median	2659400000	1269800000	1389600000	159330000	65205000	94126000	538750000	284830000	253910000	1051700000	514580000	537110000	909590000	405170000	504420000	16818	2061	15941	101998;101999;102000;102001;102002;102003;102004;102005;102006;102007;102008;102009;102010;102011;102012;102013;102014;102015;102016;102017;102018;102019;102020	137687;137688;137689;137690;137691;137692;137693;137694;137695;137696;137697;137698;137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719;137720;137721;137722;137723;137724;137725	137714			39	
FSPNSSNPIIVSCGWDKLVK	2	Acetyl (K)	2289.1464	0.14635325	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		88.597	79.258	2;3	2.536E-23	44263	160513_QHF_FH_JSI11Kac_6	199.58	184.89			0.34637	0.33355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34637	0.33355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	119620000	110270000	9354200	0	0	0	0	0	0	119620000	110270000	9354200	0	0	0	16819	2061	15942	102021;102022	137726;137727	137727	2128;2129		2	
FSPNTSQFLLVSSWDTSVR	0	Unmodified	2170.0695	0.069483134	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.62		3	2						8	3	3	2	5	94.293	89.157	2;3	6.2842E-86	45338	160513_QHF_FH_JSI9Kac_6	245.76	216.21			1.1558	1.1251	28.337	13	3	Median	1.2447	1.1251	8.3081	3	1	Median	0.81153	0.94768	16.929	3	0	Plateau	1.1172	1.0501	9.9899	2	0	Median	1.2152	1.2183	39.804	5	2	Median	1480100000	738230000	741890000	298860000	126100000	172770000	479990000	268270000	211720000	295450000	141300000	154160000	405810000	202570000	203250000	16820	359	15943	102023;102024;102025;102026;102027;102028;102029;102030;102031;102032;102033;102034;102035	137728;137729;137730;137731;137732;137733;137734;137735;137736;137737;137738;137739;137740;137741;137742;137743	137734			16	
FSPSPLSMK	1	Unmodified	992.5001	0.50010314	2630	Q15118	PDK1	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial	no	no	0	0	0	0				By MS/MS	2	0		1											1	49.343	47.945	2	0.032902	41091	160511_QHF_FH_JSI12i_2	39.547	19.265			0.73186	0.77415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73186	0.77415	NaN	1	0	Median	23508000	14462000	9046200	0	0	0	0	0	0	0	0	0	23508000	14462000	9046200	16821	2630	15944	102036	137744	137744			1	
FSPTDFLAK	1	Unmodified	1024.5229	0.52294707	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.67	4	4	4					4		4	4	4	4	77.09	73.946	2	8.9167E-05	64790	160511_QHF_FH_JSI12i_2	105.57	88.182			1.0302	1.0425	10.852	16	0	Median	1.1478	0.96416	12.587	4	0	Median	0.82792	0.99811	6.9685	4	0	Median	1.1434	1.0945	12.498	4	0	Median	0.92521	1.0507	10.329	4	0	Linear	2937900000	1482000000	1455900000	577270000	254320000	322940000	686470000	370010000	316460000	996840000	506620000	490220000	677320000	351050000	326270000	16822	1544	15945	102037;102038;102039;102040;102041;102042;102043;102044;102045;102046;102047;102048;102049;102050;102051;102052	137745;137746;137747;137748;137749;137750;137751;137752;137753;137754;137755;137756;137757;137758;137759;137760;137761;137762;137763;137764;137765;137766;137767;137768;137769;137770;137771;137772;137773;137774;137775;137776;137777;137778	137750			34	
FSPTMGR	0	Unmodified	794.37451	0.3745087	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	23.578	22.548	2	0.053397	19318	160511_QHF_FH_JSI9i_2	42.229	13.7			0.99149	0.86085	20.478	3	0	Median	0.99149	0.86085	NaN	1	0	Median	0.67294	0.82917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0826	1.2028	NaN	1	0	Median	256470000	128190000	128290000	78228000	34722000	43506000	89279000	43505000	45773000	0	0	0	88967000	49958000	39009000	16823	2084	15946	102053;102054;102055	137779	137779			1	
FSPVATASYR	0	Unmodified	1097.5506	0.55055881	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	38.198	37.535	2	0.00043859	33007	160511_QHF_FH_JSI11i_3	84.083	56.596			0.93142	0.8999	16.197	6	0	Median	1.038	0.87501	NaN	1	0	Median	0.69711	0.86668	NaN	1	0	Median	0.91986	0.88951	29.446	2	0	Median	0.95619	1.0148	13.022	2	0	Median	629790000	309340000	320450000	93572000	43300000	50272000	109730000	58490000	51237000	210640000	102570000	108070000	215850000	104970000	110870000	16824	260	15947	102056;102057;102058;102059;102060;102061	137780;137781;137782;137783;137784	137780			5	
FSPVLGR	0	Unmodified	774.43882	0.43882351	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		36.396	35.699	2	0.034652	30486	160511_QHF_FH_JSI11i_2	50.025	30.178			0.84835	0.94134	6.9428	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73577	0.89624	NaN	1	0	Median	0.97816	0.98871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117200000	64312000	52890000	0	0	0	54060000	29180000	24880000	63142000	35132000	28011000	0	0	0	16825	4956	15948	102062;102063	137785	137785			1	
FSPVTPKFTPVASK	2	Acetyl (K)	1546.8395	0.83953018	2723	Q15942	ZYX	Zyxin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.283	66.647	2	0.015173	35442	160513_QHF_FH_JSI11Kac_5	61.435	29.838			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2233600	2233600	0	0	0	0	0	0	0	2233600	2233600	0	0	0	0	16826	2723	15949	102064	137786	137786	2647;2648		1	
FSQELLSNGELNHLPLK	1	Unmodified	1938.0211	0.021076378	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	76.979	76.108	2;3	4.3719E-11	66766	160511_QHF_FH_JSI11i_2	109.84	81.039			1.2197	1.2573	66.272	6	4	Median	1.2887	1.1319	NaN	1	0	Median	1.1543	1.3967	NaN	1	0	Median	0.96813	0.96826	98.808	2	2	Median	1.1586	1.296	104.63	2	2	Median	1106800000	530300000	576500000	131470000	56863000	74608000	240490000	103000000	137490000	456650000	252170000	204480000	278180000	118260000	159920000	16827	1117	15950	102065;102066;102067;102068;102069;102070;102071	137787;137788;137789;137790;137791;137792;137793;137794;137795	137793			9	
FSQEYESIDPGQQFTWENSNLEVNKPK	2	Unmodified	3213.4891	0.48908735	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	78.048	77.262	3	1.0088E-09	68729	160511_QHF_FH_JSI10i_2	73.805	69.137			0.8551	0.83095	21.707	4	2	Median	NaN	NaN	NaN	0	0	Median	0.50727	0.59875	NaN	1	0	Median	0.86795	0.83095	9.5485	2	2	Median	0.8928	0.98998	NaN	1	0	Median	75012000	37171000	37841000	0	0	0	24308000	11215000	13093000	30144000	15778000	14367000	20560000	10178000	10382000	16828	971	15951	102072;102073;102074;102075;102076	137796;137797;137798;137799;137800;137801	137800			6	
FSQGPTPAAAVPEGTAAEGAPR	0	Unmodified	2081.0178	0.017781914	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		47.878	47.463	2	1.0079E-09	42974	160511_QHF_FH_JSI11i_1	127.75	99.891			1.1363	1.0861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1363	1.0861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40063000	20253000	19809000	0	0	0	0	0	0	40063000	20253000	19809000	0	0	0	16829	4083	15952	102077;102078;102079	137802;137803;137804;137805	137803			4	
FSQIVNLK	1	Unmodified	947.54402	0.54401687	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		100.61	100.5	2	0.051162	91169	160511_QHF_FH_JSI11i_1	37.021	0			1.0326	1.1249	2.1816	3	0	Plateau	1.3588	1.0937	NaN	1	0	Median	0.99338	1.1249	NaN	1	0	Median	1.1831	1.1416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55277000	28388000	26888000	12660000	6731300	5928900	23131000	12844000	10287000	19485000	8813300	10672000	0	0	0	16830	5214	15953	102080;102081;102082	137806	137806			1	
FSQLAEAYEVLSDEVK	1	Unmodified	1826.8938	0.89381018	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	100.77	100.66	2;3	1.4443E-09	89225	160511_QHF_FH_JSI10i_2	180.97	140.38			0.65828	0.70248	20.049	5	1	Median	0.64986	0.55628	NaN	1	0	Median	0.61669	0.75747	10.658	2	1	Median	0.65828	0.67319	NaN	1	0	Median	0.84122	0.94449	NaN	1	0	Median	462910000	260990000	201920000	65777000	33406000	32372000	98420000	62057000	36363000	188520000	105230000	83295000	110190000	60300000	49887000	16831	4062	15954	102083;102084;102085;102086;102087	137807;137808;137809;137810;137811	137811			5	
FSQMLQDKPLR	1	Acetyl (K)	1403.7231	0.72312022	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	65.759	55.033	2	0.050456	27750	160513_QHF_FH_JSI12Kac_5	42.743	38.131			3.1959	3.5215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1959	3.5215	NaN	1	0	Median	1638500	495560	1142900	0	0	0	0	0	0	0	0	0	1638500	495560	1142900	16832	4744	15955	102088	137812	137812			1	
FSQQYSTIVK	1	Unmodified	1199.6186	0.61863837	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.492	38.04	2	0.040549	32488	160511_QHF_FH_JSI11i_2	45.161	32.534			0.87317	0.88713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87317	0.88713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20178000	9009800	11168000	0	0	0	0	0	0	20178000	9009800	11168000	0	0	0	16833	5458	15956	102089	137813	137813			1	
FSREEFPTLQAAGDQDK	1	Unmodified	1937.9119	0.91191986	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								2	1			52.247	51.237	3	0.00010788	45236	160511_QHF_FH_JSI10i_2	80.638	58.163			0.63943	0.78474	19.271	3	3	Plateau	0.92654	0.79576	27.23	2	2	Median	0.63943	0.78474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96285000	57601000	38684000	61444000	32316000	29128000	34841000	25285000	9556400	0	0	0	0	0	0	16834	1628	15957	102090;102091;102092	137814;137815;137816	137816			3	
FSSAGWVSVTPNFK	1	Unmodified	1525.7565	0.75652884	3612	Q8NC60	NOA1	Nitric oxide-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.787	76.511	2	0.00031773	66456	160511_QHF_FH_JSI12i_3	96.64	87.208			1.0742	1.0635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.0635	NaN	1	0	Median	32945000	17734000	15210000	0	0	0	0	0	0	0	0	0	32945000	17734000	15210000	16835	3612	15958	102093	137817	137817			1	
FSSETWQNLGTLHR	0	Unmodified	1674.8114	0.81141795	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.17	4.84			5						1	3	2	1		60.663	58.169	2;3	2.8433E-07	47833	160511_QHF_FH_JSI9i_3	112.15	106.98			1.0341	1.0035	50.42	6	2	Median	1.2947	1.0373	31.423	3	1	Plateau	0.80442	0.93881	4.7331	2	0	Median	0.41992	0.37706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	563480000	284480000	279000000	275290000	126710000	148580000	239820000	125840000	113980000	48374000	31934000	16440000	0	0	0	16836	4126	15959	102094;102095;102096;102097;102098;102099	137818;137819;137820;137821;137822;137823;137824	137823			7	
FSSLPLGR	0	Unmodified	875.4865	0.48650199	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	45.6	44.725	2	0.0033353	39279	160511_QHF_FH_JSI11i_3	73.324	22.426			1.1618	1.1307	8.8893	5	0	Median	1.5512	1.254	NaN	1	0	Median	0.96537	1.1292	0.18083	2	0	Median	1.1618	1.102	NaN	1	0	Median	1.3191	1.3581	NaN	1	0	Median	934220000	422650000	511570000	54921000	20540000	34381000	351440000	182200000	169240000	252300000	113780000	138520000	275570000	106130000	169440000	16837	1495	15960	102100;102101;102102;102103;102104	137825;137826;137827;137828;137829	137825			5	
FSSNQPPAAGSSR	0	Unmodified	1304.6109	0.61092723	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		13.617	13.216	2	0.034017	10841	160511_QHF_FH_JSI10i_2	39.785	32.139			2.0791	2.3081	63.684	2	0	Median	NaN	NaN	NaN	0	0	Median	3.0154	3.621	NaN	1	0	Median	1.4335	1.4713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60671000	23541000	37130000	0	0	0	26036000	8478400	17557000	34635000	15062000	19572000	0	0	0	16838	2787	15961	102105;102106	137830;137831	137831			2	
FSSQQAATK	1	Unmodified	966.47706	0.47705951	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	8.7952	8.359	2	0.00083486	6065	160511_QHF_FH_JSI11i_1	73.233	46.096			0.74542	0.75394	32.015	8	3	Median	0.94329	0.80353	50.108	2	1	Median	0.56802	0.67293	9.9345	2	1	Median	0.88311	0.87322	14.63	2	0	Median	0.58192	0.64449	55.731	2	1	Median	1784500000	986670000	797800000	493490000	276730000	216760000	120700000	74433000	46270000	657310000	328510000	328800000	512960000	307000000	205960000	16839	532	15962	102107;102108;102109;102110;102111;102112;102113;102114	137832;137833;137834;137835;137836;137837;137838	137832			7	
FSSSTEQSSASR	0	Unmodified	1272.5582	0.55822296	182	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	8.5276	8.1782	2	0.0057918	6058	160511_QHF_FH_JSI10i_1	53.013	41.849			1.098	1.041	5.6429	4	1	Linear	1.4636	1.211	NaN	1	1	Median	0.91825	1.0646	NaN	1	0	Median	1.1369	1.0911	NaN	1	0	Median	1.0604	1.1386	NaN	1	0	Median	250520000	124250000	126270000	53623000	21815000	31808000	101750000	54985000	46765000	51790000	28129000	23661000	43354000	19320000	24034000	16840	182	15963	102115;102116;102117;102118	137839;137840	137839			2	
FSSVQLLGDLLFHISGVTGK	1	Unmodified	2117.1521	0.15209055	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.885	90.457	3	1.079E-45	51557	160513_QHF_FH_JSI9Kac_6	186.86	176.35			0.82819	0.81658	6.5784	4	0	Median	0.97193	0.82178	NaN	1	0	Median	0.62247	0.73139	NaN	1	0	Median	0.89413	0.85276	NaN	1	0	Median	0.76712	0.81141	NaN	1	0	Median	3043300000	1647600000	1395700000	1136800000	622800000	514010000	911790000	566560000	345230000	713750000	292220000	421530000	280920000	166010000	114910000	16841	3860	15964	102119;102120;102121;102122	137841;137842;137843;137844;137845;137846;137847	137843			7	
FSSWIGGSILASLGTFQQMWISK	1	Unmodified	2543.2883	0.28826646	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			101.38	93.357	3	2.2141E-29	56446	160513_QHF_FH_JSI10Kac_6	152.81	139.88			1.2955	1.0772	33.283	3	2	Plateau	1.1507	0.97851	16.881	2	2	Median	0.4853	0.5713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	378680000	203630000	175050000	290190000	141330000	148870000	88491000	62305000	26186000	0	0	0	0	0	0	16842	758	15965	102123;102124;102125	137848;137849;137850	137850			3	
FSSWIGGSILASLGTFQQMWISK	1	Oxidation (M)	2559.2832	0.28318108	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				99.59	90.435	3	0.0027387	52178	160513_QHF_FH_JSI9Kac_6	54.626	40.895			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16843	758	15965	102126	137851	137851		260	1	
FSTETTFLVDK	1	Unmodified	1286.6394	0.63943339	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	62.519	61.939	2	0.0021115	56186	160511_QHF_FH_JSI11i_1	58.63	53.641			0.7583	0.81298	32.336	4	1	Median	NaN	NaN	NaN	0	0	Median	0.92226	1.1019	35.233	2	1	Median	0.78685	0.76954	NaN	1	0	Median	0.65523	0.67409	NaN	1	0	Median	288800000	170730000	118070000	0	0	0	173720000	105500000	68224000	56728000	33151000	23577000	58350000	32081000	26269000	16844	1620	15966	102127;102128;102129;102130;102131	137852;137853;137854;137855;137856	137852			5	
FSTETTFLVDKYEIL	1	Unmodified	1804.9135	0.91348299	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.54	100.42	2	7.2414E-29	86372	160511_QHF_FH_JSI12i_2	187.44	162.59			0.87881	0.94615	19.121	4	1	Median	1.1219	0.94562	NaN	1	0	Median	0.9085	1.114	NaN	1	0	Median	0.69911	0.70401	NaN	1	1	Median	0.8501	0.94668	NaN	1	0	Median	307490000	167450000	140040000	40048000	21909000	18139000	45394000	23044000	22351000	115600000	72684000	42917000	106450000	49811000	56634000	16845	1620	15967	102132;102133;102134;102135	137857;137858;137859;137860	137857			4	
FSTFFDDAPVFR	0	Unmodified	1447.6772	0.67721588	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.887	92.427	2	1.3333E-05	81973	160511_QHF_FH_JSI10i_2	117.71	107.75			0.86923	0.95913	11.973	4	4	Median	1.197	0.99918	NaN	1	1	Median	0.7533	0.92068	NaN	1	1	Median	0.8012	0.78482	NaN	1	1	Median	0.94302	1.0225	NaN	1	1	Median	225190000	114660000	110530000	34715000	17235000	17480000	51703000	28001000	23703000	81361000	43127000	38234000	57412000	26297000	31115000	16846	398	15968	102136;102137;102138;102139	137861;137862;137863;137864	137864			4	
FSTLSLLLGYLK	1	Unmodified	1353.7908	0.79078908	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	2	2	100.06	95.814	2	5.8185E-92	50484	160513_QHF_FH_JSI11Kac_6	258.25	196.29			0.92209	0.90649	19.114	8	1	Median	1.1398	0.95591	0.48235	2	1	Median	0.74302	0.87558	35.826	2	0	Median	0.97088	0.9095	14.07	2	0	Median	0.72794	0.74827	20.1	2	0	Median	2365300000	1049900000	1315400000	600450000	261310000	339140000	624730000	305730000	319010000	576870000	164430000	412440000	563230000	318440000	244790000	16847	303	15969	102140;102141;102142;102143;102144;102145;102146;102147;102148	137865;137866;137867;137868;137869;137870;137871;137872;137873;137874;137875;137876;137877;137878;137879;137880	137870			16	
FSTLTDDPSPR	0	Unmodified	1234.583	0.58298115	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	35.075	34.469	2	1.0392E-05	31172	160511_QHF_FH_JSI12i_1	108.15	86.64			0.95131	0.91267	18.059	4	3	Median	0.96509	0.78869	NaN	1	1	Median	1.0022	1.2135	NaN	1	1	Median	0.93772	0.90408	NaN	1	1	Median	0.88865	0.92133	NaN	1	0	Median	276410000	157580000	118840000	47829000	27705000	20124000	80549000	47624000	32925000	73481000	39648000	33833000	74555000	42600000	31955000	16848	2591	15970	102149;102150;102151;102152;102153	137881;137882;137883;137884;137885;137886	137883			6	
FSTMEELVEHYK	1	Unmodified	1511.6966	0.6966307	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	66.957	66.066	3	3.6794E-08	57696	160511_QHF_FH_JSI11i_2	115.14	92.661			1.1535	1.1249	83.55	6	5	Median	1.0455	0.91695	86.86	2	2	Median	0.78048	0.9503	148.12	2	2	Median	0.74061	0.74669	NaN	1	0	Median	1.7964	1.9381	NaN	1	1	Median	237340000	122660000	114680000	57610000	19490000	38120000	78667000	49609000	29059000	69528000	41612000	27916000	31530000	11945000	19585000	16849	1095	15971	102154;102155;102156;102157;102158;102159	137887;137888;137889;137890;137891;137892;137893;137894	137891			8	
FSTMEELVEHYKK	2	Unmodified	1639.7916	0.79159371	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	58.481	58.35	4	0.0017003	50233	160511_QHF_FH_JSI12i_3	58.487	51.078			2.3308	2.2843	49.284	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4905	3.2366	NaN	1	1	Median	1.5564	1.6121	NaN	1	1	Median	40476000	5650600	34825000	0	0	0	0	0	0	15429000	1674800	13754000	25047000	3975800	21071000	16850	1095	15972	102160;102161	137895;137896	137896			2	
FSTPEQAAK	1	Unmodified	977.48181	0.48181054	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	18.614	17.985	2	2.693E-05	15593	160511_QHF_FH_JSI12i_1	103.83	75.321			0.96856	1.0542	12.221	8	0	Median	1.3795	1.1499	2.7745	2	0	Median	0.84939	1.0311	8.4677	2	0	Median	1.1003	1.0869	9.6568	2	0	Median	0.80293	0.87086	3.0381	2	0	Median	2759000000	1371500000	1387500000	571220000	230160000	341070000	725160000	372110000	353060000	787040000	409840000	377200000	675620000	359410000	316210000	16851	1063	15973	102162;102163;102164;102165;102166;102167;102168;102169	137897;137898;137899;137900;137901;137902;137903;137904	137902			8	
FSTVAGESGSADTVRDPR	0	Unmodified	1850.8759	0.8758687	800	P04040	CAT	Catalase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							1	2	3	2	31.298	30.73	3	0.00011675	26878	160511_QHF_FH_JSI10i_2	66.022	59.99			0.96582	1.0467	28.057	7	0	Median	1.4029	1.2112	NaN	1	0	Median	0.89672	1.1212	NaN	1	0	Median	0.96582	0.91799	44.565	3	0	Plateau	0.91879	0.98151	2.3682	2	0	Median	1238300000	647040000	591220000	265630000	118900000	146730000	294700000	170910000	123790000	453400000	225980000	227420000	224530000	131250000	93279000	16852	800	15974	102170;102171;102172;102173;102174;102175;102176;102177	137905;137906;137907;137908;137909;137910;137911;137912;137913;137914	137912			10	
FSTWTNTEFR	0	Unmodified	1287.5884	0.58840088	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	59.227	54.132	2	6.7694E-06	47686	160511_QHF_FH_JSI9i_2	107.69	99.889			0.91969	1.0256	14.133	8	0	Median	1.4352	1.2351	8.7293	2	0	Median	0.88194	1.0731	5.3205	2	0	Median	0.96297	0.96181	8.0018	2	0	Median	0.83118	0.88806	1.7752	2	0	Median	923650000	491060000	432590000	148290000	62227000	86067000	227060000	116660000	110400000	296830000	174480000	122350000	251470000	137690000	113780000	16853	862	15975	102178;102179;102180;102181;102182;102183;102184;102185	137915;137916;137917;137918;137919;137920;137921;137922;137923;137924	137916			10	
FSTYTSDKDENK	2	Unmodified	1433.6311	0.63105355	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	13.851	13.224	2;3	0.001911	10414	160511_QHF_FH_JSI11i_2	45.115	36.602			0.67924	0.60033	52.101	5	3	Median	0.67924	0.60033	NaN	1	1	Median	0.36596	0.44454	NaN	1	1	Median	0.98584	1.0222	NaN	1	0	Median	0.76653	0.85812	79.755	2	1	Median	224060000	120540000	103520000	30982000	17581000	13401000	58839000	35034000	23805000	76795000	37948000	38847000	57442000	29974000	27468000	16854	3754	15976	102186;102187;102188;102189;102190;102191	137925;137926;137927;137928;137929;137930;137931	137929			7	
FSVCVLGDQQHCDEAK	1	Unmodified	1891.8193	0.8192818	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0			By matching	By MS/MS	2.33	0.471		2	1									1	2	50.024	49.304	3	0.0010443	42417	160511_QHF_FH_JSI12i_2	52.019	50.987			0.93952	1.3902	27.29	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86363	0.87143	NaN	1	0	Median	1.3468	1.3979	0.78256	2	0	Median	249310000	120030000	129280000	0	0	0	0	0	0	114910000	60473000	54437000	134400000	59555000	74847000	16855	2036	15977	102192;102193;102194	137932;137933	137932			2	
FSVGGMTDVAEIK	1	Unmodified	1352.6646	0.66460229	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1							1	2	2	2	71.54	70.773	2	1.2856E-15	62926	160511_QHF_FH_JSI10i_2	164.9	152.37			0.81512	0.83913	25.294	7	1	Median	1.7172	1.4391	NaN	1	1	Median	0.61543	0.74337	17.137	2	0	Median	0.84307	0.84039	2.3429	2	0	Median	0.84639	0.88936	22.725	2	0	Median	1360100000	796020000	564110000	33827000	11606000	22222000	489520000	320900000	168620000	499980000	282980000	217000000	336800000	180540000	156260000	16856	1459	15978	102195;102196;102197;102198;102199;102200;102201	137934;137935;137936;137937;137938;137939	137939			6	
FSVHQQSEMDTSVK	1	Unmodified	1621.7406	0.74062078	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.33	0.471		6	3								2	1	6	31.798	30.991	2;3	8.6719E-24	26026	160511_QHF_FH_JSI12i_3	155.15	130.3			1.1614	1.2893	32.809	4	1	Median	NaN	NaN	NaN	0	0	Median	0.93868	1.1602	NaN	1	0	Median	1.437	1.4327	NaN	1	0	Median	1.2891	1.4191	53.988	2	1	Median	227420000	93861000	133560000	0	0	0	59405000	29342000	30063000	52317000	17189000	35129000	115700000	47331000	68369000	16857	859	15979	102202;102203;102204;102205;102206;102207;102208;102209;102210	137940;137941;137942;137943;137944;137945;137946;137947	137946			8	
FSVLLLHGIR	0	Unmodified	1153.6972	0.69716346	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	75.819	71.218	2;3	9.2932E-08	36327	160513_QHF_FH_JSI12Kac_6	156.51	102.35			0.95254	1.0563	44.346	15	6	Median	0.95254	0.83388	2.6963	3	0	Plateau	0.93756	1.0725	74.504	4	2	Median	1.4216	1.3252	44.906	4	2	Median	0.95626	1.02	29.738	4	2	Median	12975000000	6866600000	6108000000	2786400000	1720500000	1065900000	6399700000	3653600000	2746100000	2147800000	737880000	1409900000	1640600000	754580000	886000000	16858	4126	15980	102211;102212;102213;102214;102215;102216;102217;102218;102219;102220;102221;102222;102223;102224;102225;102226	137948;137949;137950;137951;137952;137953;137954;137955;137956;137957;137958;137959;137960;137961;137962;137963;137964;137965;137966;137967;137968;137969;137970	137967			23	
FSVLNSQHMFEVLAAMNHR	0	Unmodified	2230.0776	0.077562175	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	87.107	79.535	4	2.1576E-13	45083	160513_QHF_FH_JSI10Kac_6	126.25	117.76			0.95607	1.0785	10.007	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83821	1.0048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0905	1.1575	NaN	1	0	Median	171890000	95975000	75912000	0	0	0	141380000	82078000	59304000	0	0	0	30505000	13896000	16608000	16859	5138	15981	102227;102228	137971;137972;137973	137973			3	
FSVPGFK	1	Unmodified	780.41703	0.41702544	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.758	58.098	2	0.0041464	50224	160511_QHF_FH_JSI11i_2	99.919	99.919			1.0357	1.079	9.7127	6	0	Median	1.0467	0.89239	NaN	1	0	Median	0.93821	1.1629	NaN	1	0	Median	1.0638	1.0341	4.0648	2	0	Median	1.0479	1.1164	2.8629	2	0	Median	1150100000	516160000	633950000	148350000	65415000	82930000	210770000	124750000	86022000	483430000	199450000	283980000	307560000	126550000	181020000	16860	2286	15982	102229;102230;102231;102232;102233;102234	137974;137975;137976;137977;137978;137979;137980;137981;137982;137983;137984;137985;137986	137981			13	
FSVPHVCAR	0	Unmodified	1071.5284	0.52838358	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			38.027	36.553	3	0.044653	30575	160511_QHF_FH_JSI10i_3	16.138	13.405			1.199	1.151	0.3186	2	0	Median	1.3973	1.1484	NaN	1	0	Median	1.0288	1.1536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44370000	19159000	25211000	21652000	6591300	15061000	22718000	12568000	10150000	0	0	0	0	0	0	16861	235	15983	102235;102236	137987	137987			1	
FSVSGAK	1	Unmodified	694.36499	0.36498987	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	17.967	16.932	2	0.019031	13833	160511_QHF_FH_JSI12i_2	58.981	42.054			0.64001	0.71733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64001	0.71733	NaN	1	0	Median	162220000	91595000	70629000	0	0	0	0	0	0	0	0	0	162220000	91595000	70629000	16862	2286	15984	102237	137988	137988			1	
FSVSGLK	1	Unmodified	736.41194	0.41194006	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			40.375	39.409	2	0.039053	34807	160511_QHF_FH_JSI10i_2	47.849	22.85			0.76023	0.93218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76023	0.93218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131320000	74298000	57023000	0	0	0	131320000	74298000	57023000	0	0	0	0	0	0	16863	2286	15985	102238	137989	137989			1	
FSVSPVVR	0	Unmodified	889.50215	0.50215205	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.64	4	4	4				1	4	4	5	5	6	5	48.522	43.731	2	6.0974E-06	37552	160511_QHF_FH_JSI11i_2	140.98	104.8			0.95076	1.0175	14.299	21	0	Median	1.3854	1.1648	8.5483	5	0	Median	0.85478	0.9924	15.686	5	0	Median	0.98615	0.95959	14.777	6	0	Median	0.86688	0.94971	16.67	5	0	Median	29875000000	13183000000	16692000000	4424200000	1620500000	2803800000	6490500000	3268400000	3222100000	11345000000	4859400000	6486000000	7614800000	3434700000	4180100000	16864	1033	15986	102239;102240;102241;102242;102243;102244;102245;102246;102247;102248;102249;102250;102251;102252;102253;102254;102255;102256;102257;102258;102259	137990;137991;137992;137993;137994;137995;137996;137997;137998;137999;138000;138001;138002;138003;138004;138005;138006;138007;138008;138009;138010;138011;138012;138013;138014;138015;138016;138017;138018;138019;138020;138021	138009			32	
FSVTHHYLVQESTDK	1	Unmodified	1789.8635	0.8635131	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	2	1	1	1	45.801	36.504	3	0.00017243	31009	160511_QHF_FH_JSI9i_3	67.964	55.337			0.38722	0.46627	42.171	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.38549	0.46627	NaN	1	1	Median	0.88375	0.8527	NaN	1	0	Median	0.9671	1.0502	NaN	1	0	Median	32307000	18025000	14283000	0	0	0	21589000	13380000	8209000	5548900	2223000	3325900	5169800	2421900	2747900	16865	2612	15987	102260;102261;102262;102263;102264	138022;138023;138024;138025;138026;138027;138028	138025			7	
FSWAQGTDTILADEMGLGK	1	Unmodified	2038.967	0.9669919	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		101.3	101.18	2	7.4164E-57	89025	160511_QHF_FH_JSI9i_2	186.08	165.65			1.4411	1.4421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4411	1.4421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61109000	18348000	42761000	0	0	0	0	0	0	61109000	18348000	42761000	0	0	0	16866	2578;2318	15988	102265;102266	138029;138030	138029			2	
FSWFAGEK	1	Unmodified	970.45487	0.45486751	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	60.166	59.293	2	0.0022449	51209	160511_QHF_FH_JSI11i_2	81.548	25.537			0.90188	0.87578	18.294	8	0	Median	1.1078	0.90786	19.885	2	0	Median	0.75839	0.89333	14.094	2	0	Median	0.85351	0.84065	17.079	2	0	Median	0.75706	0.7971	35.269	2	0	Median	5453300000	2918400000	2535000000	651340000	301680000	349660000	1119700000	675370000	444310000	1688700000	912490000	776240000	1993600000	1028800000	964760000	16867	1188	15989	102267;102268;102269;102270;102271;102272;102273;102274	138031;138032;138033;138034;138035;138036;138037;138038;138039;138040;138041;138042;138043;138044;138045;138046;138047;138048;138049	138040			19	
FSWNVWPSSR	0	Unmodified	1264.5989	0.59890598	2674;2675	Q15437;Q15436	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	no	no	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			80.409	76.918	2	2.6967E-09	40898	160513_QHF_FH_JSI10Kac_6	130.66	111.38			1.1115	1.0911	13.4	2	1	Median	1.2008	0.99245	NaN	1	0	Median	1.0288	1.1995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181760000	73848000	107910000	75471000	33774000	41697000	106290000	40074000	66217000	0	0	0	0	0	0	16868	2675;2674	15990	102275;102276	138050;138051;138052	138052			3	
FSYEQLETDLQASR	0	Unmodified	1685.7897	0.78967946	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	78.951	78.035	2	0.00092718	68661	160511_QHF_FH_JSI11i_2	84.289	58.947			0.7145	0.75007	19.324	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64768	0.65428	NaN	1	1	Median	0.78821	0.85989	NaN	1	1	Median	45268000	20975000	24293000	0	0	0	0	0	0	27296000	12275000	15021000	17973000	8700200	9272400	16869	2574	15991	102277;102278	138053;138054	138054			2	
FSYIGLSQNNLR	0	Unmodified	1410.7256	0.72556306	4236	Q96S59	RANBP9	Ran-binding protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	62.99	61.89	2	1.3565E-07	50721	160511_QHF_FH_JSI9i_3	135.55	118.88			0.59451	0.60598	46.725	3	0	Median	1.5646	1.2865	NaN	1	0	Median	0.48097	0.54662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59451	0.60598	NaN	1	0	Median	115090000	66831000	48261000	27645000	12868000	14777000	41034000	28042000	12991000	0	0	0	46413000	25921000	20492000	16870	4236	15992	102279;102280;102281	138055;138056;138057	138056			3	
FSYLAVIEGAK	1	Unmodified	1196.6441	0.64412484	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		4	1						4	2	2	3	2	82.682	78.683	2	3.1835E-11	41906	160513_QHF_FH_JSI10Kac_6	140.16	123.83			0.94861	0.81491	26.29	9	1	Median	0.93578	0.78064	1.4195	2	1	Median	0.53019	0.63761	18.901	2	0	Median	1.1795	1.18	22.471	3	0	Plateau	1.0594	1.1461	9.1854	2	0	Median	841370000	454340000	387030000	200310000	109490000	90822000	244960000	150080000	94880000	238320000	124170000	114150000	157780000	70603000	87173000	16871	1133	15993	102282;102283;102284;102285;102286;102287;102288;102289;102290	138058;138059;138060;138061;138062;138063;138064;138065;138066;138067;138068;138069;138070;138071;138072;138073;138074;138075	138075			18	
FSYMAIIEGAK	1	Unmodified	1228.6162	0.61619553	1125	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.5	6.06		3							1	1		2	1	83.459	80.554	2	0.00059171	40724	160513_QHF_FH_JSI11Kac_6	85.958	64.683			0.68609	0.7176	44.188	4	2	Median	0.55032	0.47362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98676	0.9942	46.336	2	1	Median	0.67881	0.71877	NaN	1	1	Median	98322000	45439000	52883000	19933000	9931300	10002000	0	0	0	54943000	22573000	32370000	23446000	12935000	10512000	16872	1125	15994	102291;102292;102293;102294	138076;138077;138078;138079	138077			4	
FTADEAR	0	Unmodified	808.37153	0.37153181	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.037	10.653	2	0.034446	8480	160511_QHF_FH_JSI10i_1	50.127	27.107			1.3977	1.3166	18.441	4	0	Median	1.516	1.2596	NaN	1	0	Median	0.91772	1.0807	NaN	1	0	Median	1.7647	1.6809	NaN	1	0	Median	1.2886	1.3761	NaN	1	0	Median	462690000	200950000	261740000	115390000	37524000	77864000	134420000	60507000	73912000	106720000	48103000	58620000	106160000	54817000	51342000	16873	3101	15995	102295;102296;102297;102298	138080;138081	138081			2	
FTAFKEEYEGK	2	Unmodified	1347.6347	0.63468237	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.321	33.321	3	0.055354	29028	160511_QHF_FH_JSI11i_3	30.004	21.9			1.0555	0.98526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0555	0.98526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38180000	16397000	21783000	0	0	0	0	0	0	38180000	16397000	21783000	0	0	0	16874	2338	15996	102299	138082	138082			1	
FTAFYASR	0	Unmodified	961.46577	0.46576654	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.57	6.43			4						3	2	2	2	1	43.173	39.479	2	0.019171	34711	160511_QHF_FH_JSI11i_3	53.878	44.29			1.0595	1.0444	13.128	6	1	Median	1.5487	1.3067	0.19989	2	1	Median	0.90158	1.0478	NaN	1	0	Median	1.0589	0.99886	5.7035	2	0	Median	1.0252	1.0409	NaN	1	0	Median	427870000	202200000	225670000	93117000	42249000	50868000	62070000	27741000	34329000	153630000	70323000	83304000	119060000	61885000	57171000	16875	2453	15997	102300;102301;102302;102303;102304;102305;102306	138083;138084;138085;138086;138087	138083			5	
FTAIIGPNGSGK	1	Unmodified	1160.619	0.61897272	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	42.52	41.989	2	0.00024954	37033	160511_QHF_FH_JSI11i_3	77.379	63.66			1.3691	1.3127	26.09	6	2	Median	1.4648	1.29	NaN	1	0	Median	0.89962	1.0861	NaN	1	0	Median	1.752	2.1063	34.499	3	2	Plateau	1.4021	1.3819	NaN	1	0	Median	370280000	160100000	210180000	46004000	23168000	22836000	75339000	47797000	27541000	221700000	77399000	144300000	27235000	11740000	15495000	16876	2560	15998	102307;102308;102309;102310;102311;102312	138088;138089;138090;138091;138092	138088			5	
FTAILYR	0	Unmodified	882.49634	0.49633839	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	57.556	47.964	2	0.015764	26057	160513_QHF_FH_JSI11Kac_6	74.423	63.308			1.0185	0.96085	2.579	3	0	Median	1.0937	0.93794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0185	0.98755	NaN	1	0	Median	0.88734	0.96085	NaN	1	0	Median	60269000	27049000	33220000	20555000	7441300	13114000	0	0	0	31044000	15772000	15272000	8669900	3835600	4834300	16877	3419	15999	102313;102314;102315	138093	138093			1	
FTALSSESIENLPSVFGSNPK	1	Unmodified	2223.1059	0.10592822	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			96.841	96.711	2;3	5.7959E-12	85731	160511_QHF_FH_JSI10i_2	105	91.598			1.3478	1.1237	NaN	1	1	Median	1.3478	1.1237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35320000	15470000	19850000	35320000	15470000	19850000	0	0	0	0	0	0	0	0	0	16878	3838	16000	102316;102317	138094;138095	138095			2	
FTALYSLSQYHR	0	Unmodified	1484.7412	0.74121312	2341	Q13017	ARHGAP5	Rho GTPase-activating protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	65.918	56.675	3	2.8383E-07	31144	160513_QHF_FH_JSI10Kac_6	111.94	97.906			0.59564	0.68977	58.613	5	4	Median	0.50394	0.4331	NaN	1	1	Median	0.59564	0.68977	NaN	1	1	Median	0.9182	0.90435	97.511	2	2	Median	0.85623	0.92772	NaN	1	0	Median	103250000	57159000	46096000	23835000	17004000	6830400	55094000	28454000	26639000	15469000	6956500	8513000	8856700	4743200	4113500	16879	2341	16001	102318;102319;102320;102321;102322	138096;138097;138098;138099;138100;138101	138101			6	
FTAPSMASVLEQLNVINGILFIPLSQK	1	Unmodified	2929.5987	0.59870156	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	2	1	1	102.98	94.711	2;3;4	8.9932E-201	54282	160513_QHF_FH_JSI9Kac_6	290.16	270.6			1.0541	0.90258	20.305	5	2	Median	1.0572	0.8942	1.3182	2	0	Median	1.0364	1.2078	12.244	2	1	Median	0.82591	0.79143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	980260000	495370000	484890000	665050000	342100000	322960000	295120000	143160000	151950000	10679000	3982100	6697100	9409500	6128700	3280800	16880	485	16002	102323;102324;102325;102326;102327;102328;102329	138102;138103;138104;138105;138106;138107;138108;138109;138110;138111	138105			10	
FTAQGLPDLNHSQVYAVK	1	Unmodified	1987.0163	0.016325351	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	66.167	65.268	3	0.0010383	57854	160511_QHF_FH_JSI10i_2	47.732	37.886			0.70001	0.74853	5.251	3	0	Median	NaN	NaN	NaN	0	0	Median	0.57962	0.69676	NaN	1	0	Median	0.77367	0.77182	NaN	1	0	Median	0.70001	0.74853	NaN	1	0	Median	146720000	85759000	60964000	0	0	0	42503000	24503000	18000000	63635000	36452000	27182000	40586000	24804000	15782000	16881	3904	16003	102330;102331;102332	138112	138112			1	
FTASAGIQVVGDDLTVTNPK	1	Unmodified	2032.0477	0.047685059	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.823	10	9	9							8	7	6	7	78.773	78.082	2;3	7.6099E-267	71363	160511_QHF_FH_JSI12i_1	447.1	410.78			0.86366	0.89842	11.797	26	5	Median	1.1777	1.0156	13.513	7	2	Median	0.65443	0.79637	6.6816	7	1	Median	0.97917	0.95737	8.6405	6	1	Median	0.8346	0.87905	3.8457	6	1	Median	8621700000	4388100000	4233600000	1204300000	544080000	660200000	3087700000	1794600000	1293100000	1698100000	754510000	943560000	2631600000	1294800000	1336700000	16882	854	16004	102333;102334;102335;102336;102337;102338;102339;102340;102341;102342;102343;102344;102345;102346;102347;102348;102349;102350;102351;102352;102353;102354;102355;102356;102357;102358;102359;102360	138113;138114;138115;138116;138117;138118;138119;138120;138121;138122;138123;138124;138125;138126;138127;138128;138129;138130;138131;138132;138133;138134;138135;138136;138137;138138;138139;138140;138141;138142;138143;138144;138145;138146;138147;138148;138149;138150;138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161;138162;138163;138164;138165;138166;138167;138168;138169;138170;138171;138172;138173;138174;138175;138176;138177;138178;138179;138180;138181;138182;138183;138184;138185;138186;138187;138188;138189;138190;138191;138192;138193;138194;138195;138196;138197;138198;138199;138200;138201;138202;138203;138204;138205;138206;138207;138208;138209;138210;138211	138144			99	
FTASAGIQVVGDDLTVTNPKR	1	Unmodified	2188.1488	0.14879609	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			71.874	70.418	3	0.01968	58941	160511_QHF_FH_JSI10i_3	31.358	16.203			0.56927	0.63067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56927	0.63067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20613000	13813000	6800500	0	0	0	20613000	13813000	6800500	0	0	0	0	0	0	16883	854	16005	102361	138212	138212			1	
FTATASLGVIHK	1	Unmodified	1243.6925	0.69247202	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	3	3	5	4	53.239	48.018	2;3	1.1785E-24	26038	160513_QHF_FH_JSI11Kac_6	163.78	145.64			1.1155	1.0687	29.812	15	7	Median	1.0123	0.86083	27.024	3	0	Plateau	0.8419	1.0181	8.6812	3	0	Median	1.1326	1.122	35.159	5	4	Median	1.1826	1.2186	42.141	4	3	Median	2198900000	1080600000	1118300000	351710000	157160000	194550000	388810000	188860000	199950000	600560000	288310000	312250000	857840000	446250000	411590000	16884	4272	16006	102362;102363;102364;102365;102366;102367;102368;102369;102370;102371;102372;102373;102374;102375;102376	138213;138214;138215;138216;138217;138218;138219;138220;138221;138222;138223;138224;138225;138226;138227;138228;138229;138230;138231;138232;138233	138216			21	
FTATVETTIAR	0	Unmodified	1208.6401	0.6401021	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.553	44.162	2	0.00038161	37801	160511_QHF_FH_JSI12i_2	72.643	57.492			1.0345	1.1173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0345	1.1173	NaN	1	0	Median	43887000	23289000	20598000	0	0	0	0	0	0	0	0	0	43887000	23289000	20598000	16885	5463	16007	102377	138234;138235	138235			2	
FTCEMFHPNIYPDGR	0	Unmodified	1882.8131	0.81307421	1914	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			64.911	64.075	3	0.014979	56771	160511_QHF_FH_JSI10i_2	32.997	22.363			0.63587	0.79072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63587	0.79072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30352000	19117000	11235000	0	0	0	30352000	19117000	11235000	0	0	0	0	0	0	16886	1914	16008	102378	138236	138236			1	
FTDDYQLFEELGK	1	Unmodified	1603.7406	0.740604	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	87.287	86.636	2	0.0001045	76217	160511_QHF_FH_JSI11i_2	111.63	99.899			1.3774	1.1222	21.908	4	2	Linear	1.3814	1.202	NaN	1	0	Median	1.3156	1.6227	NaN	1	0	Median	1.066	1.0477	NaN	1	1	Median	0.9188	0.99633	NaN	1	1	Median	137570000	62779000	74793000	33758000	15507000	18251000	31102000	12928000	18174000	41477000	19580000	21897000	31235000	14764000	16471000	16887	2439	16009	102379;102380;102381;102382	138237;138238;138239;138240	138240			4	
FTDEEVDELYR	0	Unmodified	1414.6252	0.62523989	223;1151	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			56.979	56.206	2	0.00076374	50622	160511_QHF_FH_JSI10i_1	80.916	60.216			0.36964	0.36447	13.301	2	2	Median	0.40426	0.33176	NaN	1	1	Median	0.33798	0.40041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1309800000	1002000000	307840000	457070000	335110000	121960000	852770000	666890000	185880000	0	0	0	0	0	0	16888	223;1151	16010	102383;102384	138241;138242	138241			2	
FTDELMEQGLTYK	1	Unmodified	1573.7334	0.73341013	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	68.903	68.172	2	1.0844E-07	59989	160511_QHF_FH_JSI9i_2	100.55	83.98			0.9959	1.0508	41.839	8	4	Median	1.2615	1.0601	0.84418	2	1	Median	0.83555	1.004	6.043	2	1	Median	0.73023	0.734	55.423	2	1	Median	0.89721	0.97314	86.745	2	1	Median	576200000	267360000	308850000	131680000	57558000	74118000	176950000	84921000	92025000	157490000	69377000	88111000	110090000	55499000	54595000	16889	3862	16011	102385;102386;102387;102388;102389;102390;102391;102392;102393	138243;138244;138245;138246;138247;138248;138249;138250;138251;138252;138253;138254;138255	138253			13	
FTDSAIAMNSK	1	Unmodified	1183.5543	0.55432356	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	1	3	2	36.233	34.09	2	0.0040936	30408	160511_QHF_FH_JSI11i_1	66.056	33.701			1.8357	1.6942	94.131	6	5	Median	1.7905	1.5801	NaN	1	1	Median	6.0866	6.8119	NaN	1	1	Median	1.0244	1.0203	76.886	3	2	Median	2.3256	2.4075	NaN	1	1	Median	300100000	125420000	174680000	27799000	9965300	17834000	33221000	4940400	28281000	136340000	74511000	61832000	102740000	36004000	66732000	16890	3801	16012	102394;102395;102396;102397;102398;102399;102400	138256;138257;138258;138259;138260;138261;138262	138256			7	
FTDTRKDEQER	1	Unmodified	1423.6692	0.66917039	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	3	2	1	5.7726	5.5239	2;3	4.5084E-05	3351	160511_QHF_FH_JSI11i_3	121.83	84.354			0.77374	0.80493	29.858	7	0	Median	1.4407	1.2241	NaN	1	0	Median	0.68579	0.80493	3.1579	3	0	Median	0.79097	0.74123	1.3627	2	0	Median	1.5513	1.5922	NaN	1	0	Median	799410000	418450000	380960000	141340000	59787000	81548000	420840000	243940000	176900000	177530000	91117000	86411000	59710000	23604000	36106000	16891	1033	16013	102401;102402;102403;102404;102405;102406;102407	138263;138264;138265;138266;138267;138268;138269;138270;138271;138272	138263			8	
FTDTRKDEQER	1	Acetyl (K)	1465.6797	0.67973508	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	16.376	8.8216	3	0.055561	6707	160513_QHF_FH_JSI12Kac_4	38.3	29.995			0.64491	0.6947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64491	0.6947	NaN	1	0	Median	15144000	9771800	5371800	0	0	0	0	0	0	0	0	0	15144000	9771800	5371800	16892	1033	16013	102408	138273	138273			1	
FTEDLVGSVVHVLSHR	0	Unmodified	1793.9424	0.94243213	3112	Q6P9B6	TLDC1	TLD domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.781	88.726	4	0.02051	76970	160511_QHF_FH_JSI12i_3	35.329	24.05			2.2115	2.3904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2115	2.3904	NaN	1	1	Median	15121000	2191900	12929000	0	0	0	0	0	0	9380300	0	9380300	5740900	2191900	3549000	16893	3112	16014	102409;102410	138274;138275	138275			2	
FTEEIPLK	1	Unmodified	975.5277	0.5276981	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	50.252	49.605	2	0.0026724	44794	160511_QHF_FH_JSI11i_1	78.324	65.335			0.83271	0.87198	8.0647	5	0	Median	1.1298	0.90308	NaN	1	0	Median	0.74811	0.9178	NaN	1	0	Median	0.82285	0.80827	10.73	2	0	Median	0.83271	0.87188	NaN	1	0	Median	1317200000	668850000	648330000	246010000	109030000	136970000	280340000	156760000	123570000	549430000	287250000	262190000	241400000	115810000	125600000	16894	132	16015	102411;102412;102413;102414;102415	138276;138277;138278;138279;138280;138281;138282	138276			7	
FTEEVVK	1	Unmodified	850.44363	0.44363412	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	24.707	24.03	2	0.0167	20992	160511_QHF_FH_JSI10i_1	62.659	27.553			1.1889	1.1114	52.858	7	4	Median	1.3379	1.1114	NaN	1	0	Median	0.88028	1.0586	44.028	2	1	Median	1.3294	1.3291	57.801	2	1	Median	0.78175	0.84171	96.836	2	2	Median	2152800000	1221000000	931820000	359750000	164260000	195490000	545960000	342450000	203510000	624910000	366780000	258130000	622200000	347510000	274690000	16895	1645	16016	102416;102417;102418;102419;102420;102421;102422	138283;138284;138285;138286;138287;138288;138289	138286			7	
FTEHNSSPNVSGSLSSGLQK	1	Unmodified	2074.992	0.99196109	5342	Q9UJF2	RASAL2	Ras GTPase-activating protein nGAP	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		39.438	39.438	3	0.024745	34720	160511_QHF_FH_JSI11i_3	30.779	24.816			0.59475	0.56759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59475	0.56759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18974000	14160000	4814100	0	0	0	0	0	0	18974000	14160000	4814100	0	0	0	16896	5342	16017	102423	138290	138290			1	
FTELKGTGCK	2	Acetyl (K)	1181.5751	0.575059	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		37.104	27.656	2	0.00042423	16954	160513_QHF_FH_JSI11Kac_4	93.111	61.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16897	1691	16018	102424	138291	138291	1709		1	
FTENDSEK	1	Unmodified	968.40871	0.40870518	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.694	7.3463	2	0.00046728	5237	160511_QHF_FH_JSI10i_1	107.29	96.881			1.1549	1.1994	7.9504	4	0	Median	1.6821	1.353	NaN	1	0	Median	1.0283	1.204	NaN	1	0	Median	1.1492	1.1173	NaN	1	0	Median	1.1607	1.1948	NaN	1	0	Median	727420000	331330000	396090000	178420000	58603000	119820000	212540000	112750000	99793000	145610000	61491000	84121000	190840000	98492000	92352000	16898	3817	16019	102425;102426;102427;102428	138292;138293;138294;138295	138294			4	
FTEWLHEVLK	1	Unmodified	1300.6816	0.68157298	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	3	2	1	72.642	71.827	3	0.0010238	62692	160511_QHF_FH_JSI11i_2	65.056	56.543			0.12329	0.12117	252.59	5	5	Median	6.8351	5.9365	NaN	1	1	Median	0.076246	0.09256	296.57	3	3	Median	0.12329	0.12117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81349000	37692000	43657000	10524000	4674000	5850300	33512000	21435000	12076000	30676000	11583000	19093000	6637000	0	6637000	16899	2800	16020	102429;102430;102431;102432;102433;102434;102435;102436	138296;138297;138298;138299;138300;138301;138302;138303	138299			8	
FTEYETQVK	1	Unmodified	1143.5448	0.54480473	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.5	0.5	3	3								2	2		2	26.963	26.074	2	0.00023795	22647	160511_QHF_FH_JSI9i_1	99.139	81.153			0.71852	0.74078	22.555	6	6	Median	0.85752	0.71718	1.501	2	2	Median	0.64051	0.77738	3.7442	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5888	0.6408	46.374	2	2	Median	1691600000	855260000	836330000	428700000	174140000	254560000	697670000	382360000	315310000	0	0	0	565230000	298770000	266470000	16900	2360	16021	102437;102438;102439;102440;102441;102442	138304;138305;138306;138307;138308;138309	138307			6	
FTFGLDWVPK	1	Unmodified	1208.623	0.62299547	1573;3920	P45974;Q92995	USP5;USP13	Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	98.918	98.767	2	0.00050782	85009	160511_QHF_FH_JSI12i_2	85.67	76.082			0.95109	1.0007	2.2177	4	0	Median	1.1522	0.99415	NaN	1	0	Median	0.78151	0.96563	NaN	1	0	Median	1.0196	1.0073	NaN	1	0	Median	0.88717	1.0158	NaN	1	0	Median	113190000	59349000	53838000	19711000	7998300	11713000	24689000	16385000	8304200	33084000	18210000	14874000	35703000	16756000	18947000	16901	1573;3920	16022	102443;102444;102445;102446	138310;138311;138312;138313;138314;138315	138310			6	
FTFHLEPQAQATQVSDVPATSR	0	Unmodified	2429.1975	0.19753719	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	68.144	67.468	3	1.2326E-15	59427	160511_QHF_FH_JSI9i_2	130.25	109.43			1.0021	1.0538	13.859	5	0	Median	1.2426	1.0538	NaN	1	0	Median	1.0304	1.2346	0.076464	2	0	Median	1.0021	0.93449	NaN	1	0	Median	0.90502	0.93805	NaN	1	0	Median	325270000	171110000	154160000	52276000	28073000	24203000	102930000	50304000	52628000	120500000	67764000	52734000	49559000	24968000	24592000	16902	450	16023	102447;102448;102449;102450;102451;102452	138316;138317;138318;138319;138320;138321;138322;138323;138324;138325;138326;138327	138320			12	
FTFIEKCNNPR	1	Acetyl (K)	1466.6976	0.69763375	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3		1	2	2	66.17	55.879	2	4.3643E-11	29171	160513_QHF_FH_JSI12Kac_6	140.75	117.33			0.68937	0.71338	29.575	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58536	0.57876	NaN	1	0	Median	0.81186	0.87931	NaN	1	0	Median	22647000	14043000	8603800	0	0	0	0	0	0	14325000	9251300	5073400	8322400	4792000	3530400	16903	1494	16024	102453;102454;102455;102456;102457	138328;138329;138330;138331;138332;138333;138334	138333	1505		7	
FTFLYVGDQLHLNPQVAK	1	Unmodified	2089.0997	0.09966105	759	O96028	WHSC1	Histone-lysine N-methyltransferase NSD2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		12.5	6.06		1							3	2		2		88.613	81.893	3	3.748E-07	42821	160513_QHF_FH_JSI9Kac_6	154.49	133.84			0.49945	0.44912	28.488	4	4	Median	0.50359	0.43462	32.88	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4859	0.47369	35.77	2	2	Median	NaN	NaN	NaN	0	0	Median	248270000	142220000	106050000	142430000	77314000	65120000	0	0	0	105840000	64907000	40929000	0	0	0	16904	759	16025	102458;102459;102460;102461	138335;138336;138337;138338	138337			4	
FTFPDPPPLSPPVLGLHGVTFGYQGQK	1	Unmodified	2895.496	0.49595105	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.54		2	5						2	1	4	3	1	100.03	97.944	3	2.1285E-48	90540	160511_QHF_FH_JSI11i_3	204.53	194.54			0.87368	0.88326	19.43	9	6	Median	0.9559	0.81113	NaN	1	1	Median	0.8098	0.96992	20.889	4	3	Median	0.87368	0.84945	19.417	3	2	Median	1.0645	1.082	NaN	1	0	Median	2316100000	1236700000	1079400000	60814000	26071000	34742000	601200000	341730000	259470000	1041900000	566820000	475050000	612220000	302090000	310140000	16905	3634	16026	102462;102463;102464;102465;102466;102467;102468;102469;102470	138339;138340;138341;138342;138343;138344;138345;138346;138347	138339			9	
FTFSHSASAANGTNSK	1	Unmodified	1625.7434	0.74339797	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		23.932	22.974	3	4.7039E-05	19004	160511_QHF_FH_JSI10i_3	88.427	79.828			1.2334	1.3819	43.642	4	4	Median	2.2509	1.8681	NaN	1	1	Median	1.2334	1.3819	18.466	2	2	Median	0.73633	0.68846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77262000	37480000	39782000	17180000	5820200	11360000	40276000	18230000	22047000	19806000	13431000	6375500	0	0	0	16906	2912	16027	102471;102472;102473;102474	138348;138349;138350;138351	138350			4	
FTFYDGPPFATGLPHYGHILAGTIK	1	Unmodified	2719.3799	0.37985866	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	5	4	4	4	94.79	90.291	3;4	1.546E-78	42955	160513_QHF_FH_JSI12Kac_6	213.47	200.79			0.93733	0.96446	12.997	17	2	Median	1.1212	0.91598	10.705	5	2	Median	0.87041	1.01	10.505	4	0	Median	1.0219	0.97516	16.326	4	0	Median	0.91296	0.9343	16.758	4	0	Median	10295000000	5358500000	4936900000	1200100000	590380000	609730000	2153200000	1204600000	948660000	2580800000	1263500000	1317300000	4361300000	2300100000	2061200000	16907	1520	16028	102475;102476;102477;102478;102479;102480;102481;102482;102483;102484;102485;102486;102487;102488;102489;102490;102491	138352;138353;138354;138355;138356;138357;138358;138359;138360;138361;138362;138363;138364;138365;138366;138367;138368;138369;138370;138371;138372;138373;138374;138375;138376;138377;138378;138379;138380;138381;138382;138383;138384	138378			33	
FTGLSKEELLK	2	Acetyl (K)	1305.718	0.71801807	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15	0								3			1	1	1	78.667	68.17	2	3.009E-14	36205	160513_QHF_FH_JSI11Kac_5	147.37	96.761			0.33838	0.36997	77.767	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84679	0.99496	NaN	1	0	Median	0.21863	0.21458	NaN	1	0	Median	0.33838	0.36997	NaN	1	0	Median	128270000	102760000	25518000	0	0	0	13583000	6644500	6938900	109280000	91973000	17306000	5410800	4137800	1273000	16908	895	16029	102492;102493;102494	138385;138386	138385	635		2	
FTGNIMQVPPLYSALK	1	Unmodified	1777.9437	0.94367768	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.859	97.669	2	0.00087132	85514	160511_QHF_FH_JSI11i_2	61.038	46.78			0.68343	0.76101	10.498	4	0	Median	0.988	0.86199	NaN	1	0	Median	0.62275	0.76591	NaN	1	0	Median	0.66872	0.66679	NaN	1	0	Median	0.69846	0.75614	NaN	1	0	Median	88526000	49507000	39020000	19082000	8868000	10214000	18971000	11518000	7453100	25719000	14983000	10736000	24755000	14138000	10617000	16909	3798	16030	102495;102496;102497;102498	138387;138388;138389	138388			3	
FTGSEIR	0	Unmodified	808.40792	0.40791731	1379;527	P31930;O75439	UQCRC1;PMPCB	Cytochrome b-c1 complex subunit 1, mitochondrial;Mitochondrial-processing peptidase subunit beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.47	2	3	1					4		2	3	2	3	19.624	15.525	2	0.010164	9745	160513_QHF_FH_JSI11Kac_5	83.377	54.848			1.1497	1.0622	27.114	10	1	Median	1.2262	1.0341	0.22615	2	1	Median	1.3162	1.5427	39.638	3	0	Plateau	1.1497	1.1646	6.7427	2	0	Median	0.86174	0.95301	40.025	3	0	Median	2043100000	1014800000	1028300000	448250000	159580000	288670000	185960000	88423000	97538000	808730000	434900000	373830000	600210000	331930000	268280000	16910	1379;527	16031	102499;102500;102501;102502;102503;102504;102505;102506;102507;102508	138390;138391;138392;138393;138394;138395;138396;138397;138398;138399	138397			10	
FTHAFSSDLMR	0	Unmodified	1310.6078	0.60775611	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6								4	2	3	45.202	44.506	2;3	5.4354E-06	38903	160511_QHF_FH_JSI11i_3	90.653	84.42			0.88951	1.082	67.143	9	8	Median	NaN	NaN	NaN	0	0	Median	0.74676	0.8783	35.002	4	3	Median	1.9775	1.9185	40.627	2	2	Median	0.72328	0.74418	107.94	3	3	Median	983130000	425980000	557150000	0	0	0	243600000	152970000	90630000	351310000	123580000	227730000	388220000	149430000	238790000	16911	4915	16032	102509;102510;102511;102512;102513;102514;102515;102516;102517	138400;138401;138402;138403;138404;138405;138406;138407;138408;138409	138400			10	
FTHIPSGK	1	Unmodified	885.47085	0.47085192	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	13.308	13.336	2	0.0054523	10711	160511_QHF_FH_JSI11i_3	73.665	53.383			3.3134	3.0636	120.79	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1571	1.0732	148.34	2	2	Median	3.0148	3.0288	NaN	1	1	Median	256550000	108740000	147810000	0	0	0	0	0	0	168880000	80065000	88814000	87672000	28673000	58999000	16912	3301	16033	102518;102519;102520	138410;138411;138412	138410			3	
FTHLFWFGDLNYR	0	Unmodified	1714.8256	0.82561145	280	O15357;Q92835	INPPL1;INPP5D	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2;Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	87.145	79.387	2;3	1.5017E-09	43821	160513_QHF_FH_JSI11Kac_6	117.93	106.32			0.97805	0.8751	22.654	5	0	Median	1.0163	0.85163	NaN	1	0	Median	0.85175	1.0019	19.143	2	0	Median	1.1722	1.1136	NaN	1	0	Median	0.62575	0.65819	NaN	1	0	Median	803920000	439990000	363920000	178260000	103710000	74549000	422600000	237120000	185480000	130810000	57174000	73638000	72246000	41988000	30258000	16913	280	16034	102521;102522;102523;102524;102525	138413;138414;138415;138416;138417;138418;138419;138420;138421	138413			9	
FTIGDHSR	0	Unmodified	931.45118	0.45117911	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	17.187	16.846	2;3	0.0085898	13816	160511_QHF_FH_JSI10i_3	44.349	34.568			0.82668	0.76151	22.442	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0231	1.1778	NaN	1	0	Median	0.82668	0.76151	NaN	1	0	Median	0.84076	0.86389	NaN	1	0	Median	825900000	411330000	414570000	0	0	0	178220000	96461000	81757000	363810000	166020000	197790000	283870000	148850000	135030000	16914	472	16035	102526;102527;102528;102529	138422;138423;138424;138425;138426;138427;138428	138425			7	
FTILDSQGK	1	Unmodified	1007.5288	0.52876073	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			47.202	46.193	2	0.00030804	40680	160511_QHF_FH_JSI10i_2	93.166	66.036			1.9173	1.978	20.053	2	2	Median	1.9668	1.7165	NaN	1	1	Median	1.8689	2.2794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	260820000	90449000	170370000	133320000	47505000	85819000	127500000	42944000	84554000	0	0	0	0	0	0	16915	5135	16036	102530;102531	138429;138430	138430			2	
FTILGGK	1	Unmodified	734.43268	0.4326755	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	47.013	46.169	2	0.011748	39351	160511_QHF_FH_JSI12i_3	60.788	19.286			0.85596	0.84912	7.4678	3	0	Plateau	1.0273	0.88594	NaN	1	0	Median	0.80764	0.98185	NaN	1	0	Median	0.85596	0.84912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116650000	62287000	54359000	37218000	16316000	20902000	36796000	21610000	15187000	42632000	24361000	18270000	0	0	0	16916	4261	16037	102532;102533;102534;102535;102536	138431;138432;138433	138433			3	
FTISDHPQPIDPLLK	1	Unmodified	1719.9196	0.91957142	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.514	1	8	2							2	2	4	3	75.531	74.866	2;3	4.6925E-05	66828	160511_QHF_FH_JSI11i_3	88.507	72.983			0.95053	0.96797	17.431	10	2	Median	0.98323	0.8089	NaN	1	0	Median	0.75958	0.92662	2.1467	2	0	Median	0.85508	0.86662	17.908	4	1	Linear	0.89322	0.98773	18.624	3	1	Median	3058200000	1558000000	1500200000	399680000	166310000	233370000	723810000	410820000	313000000	1264800000	627510000	637290000	669900000	353400000	316500000	16917	3343	16038	102537;102538;102539;102540;102541;102542;102543;102544;102545;102546;102547	138434;138435;138436;138437;138438;138439;138440;138441;138442;138443;138444;138445;138446;138447;138448;138449;138450;138451;138452;138453	138434			19	
FTITPPTAQVVGVLK	1	Unmodified	1569.913	0.91302948	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.576	4	8	1							2	3	5	3	91.933	91.526	2;3	1.5748E-14	80583	160511_QHF_FH_JSI11i_2	156.58	149.98			0.94772	1.0104	12.959	13	1	Median	1.1881	1.029	4.3301	2	0	Median	0.88445	1.103	5.5431	3	0	Median	0.94869	0.93214	18.839	5	1	Median	0.94295	1.1229	7.3505	3	0	Plateau	848230000	412720000	435510000	136530000	59098000	77435000	225250000	111730000	113520000	302830000	147270000	155560000	183620000	94625000	88990000	16918	1788	16039	102548;102549;102550;102551;102552;102553;102554;102555;102556;102557;102558;102559;102560	138454;138455;138456;138457;138458;138459;138460;138461;138462;138463;138464;138465;138466;138467;138468;138469;138470;138471;138472;138473;138474;138475;138476	138469			23	
FTITPSTTQVVGILK	1	Unmodified	1603.9185	0.91850879	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	2	8	4							3	4	4	3	90.026	89.503	2;3	1.3017E-21	77326	160511_QHF_FH_JSI12i_2	178.67	173.57			0.96953	0.9863	14.087	14	0	Median	1.0424	0.8837	5.7748	3	0	Plateau	0.82456	1.0059	5.5985	4	0	Median	0.96095	0.93858	22.771	4	0	Median	1.0412	1.1336	9.1749	3	0	Median	674030000	335690000	338340000	99921000	45603000	54317000	177260000	101770000	75489000	219570000	100280000	119290000	177290000	88043000	89243000	16919	1606	16040	102561;102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574	138477;138478;138479;138480;138481;138482;138483;138484;138485;138486;138487;138488;138489;138490;138491;138492;138493;138494;138495;138496;138497;138498	138481			22	
FTIVWHLK	1	Unmodified	1042.5964	0.59638679	4150	Q96K49	TMEM87B	Transmembrane protein 87B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	73.203	68.565	3	0.00039754	35337	160513_QHF_FH_JSI12Kac_6	82.452	69.416			0.9131	0.89838	19.607	8	2	Median	0.9868	0.84671	7.3776	2	0	Median	0.8242	0.98164	11.536	2	0	Median	0.89761	0.84552	17.447	2	1	Median	0.92019	0.96167	42.573	2	1	Median	399250000	225300000	173950000	93860000	52946000	40913000	133000000	85813000	47183000	74181000	43871000	30310000	98218000	42672000	55546000	16920	4150	16041	102575;102576;102577;102578;102579;102580;102581;102582	138499;138500;138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511	138508			13	
FTKDHLIR	1	Acetyl (K)	1070.5873	0.58727866	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	43.848	34.344	3	0.057038	17954	160513_QHF_FH_JSI12Kac_6	32.999	21.285			0.88977	0.97755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88977	0.97755	NaN	1	0	Median	3444400	1984300	1460100	0	0	0	0	0	0	0	0	0	3444400	1984300	1460100	16921	5461	16042	102583	138512	138512			0	
FTKSVINSK	2	Acetyl (K)	1064.5866	0.58660996	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.699	33.482	2	0.027846	20034	160513_QHF_FH_JSI11Kac_4	48.602	25.549			0.34036	0.3397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34036	0.3397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19934000	14883000	5050600	0	0	0	0	0	0	19934000	14883000	5050600	0	0	0	16922	5523	16043	102584	138513	138513			1	
FTLAGHTK	1	Unmodified	873.47085	0.47085192	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									3	3	17.125	17.135	2;3	0.0032641	13685	160511_QHF_FH_JSI12i_3	51.949	41.481			1.3472	1.2721	69.058	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6946	1.6012	52.2	3	2	Median	0.54367	0.56239	NaN	1	0	Median	1215900000	592600000	623280000	0	0	0	0	0	0	748460000	345280000	403180000	467420000	247320000	220100000	16923	1971	16044	102585;102586;102587;102588;102589;102590	138514;138515;138516;138517;138518;138519;138520;138521	138518			8	
FTLLPPTSPGDTAPK	1	Unmodified	1540.8137	0.81370936	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		70.247	69.6	2	0.00037754	63409	160511_QHF_FH_JSI11i_1	94.767	74.561			0.56664	0.59274	29.267	6	6	Median	0.60779	0.52149	21.745	2	2	Median	0.38931	0.45645	50.645	2	2	Median	0.63803	0.63279	12.878	2	2	Median	NaN	NaN	NaN	0	0	Median	152500000	84847000	67653000	43105000	23045000	20060000	56010000	33328000	22682000	53385000	28473000	24911000	0	0	0	16924	2466	16045	102591;102592;102593;102594;102595;102596	138522;138523;138524;138525;138526;138527;138528	138522			7	
FTLLQSVHIYK	1	Unmodified	1347.7551	0.75507227	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	3	3	3	4	76.104	69.96	2;3	1.3796E-20	38229	160513_QHF_FH_JSI10Kac_6	152.7	137.32			2.6172	0.93789	59.216	13	6	Linear	1.2688	1.0722	114.2	3	1	Median	1.3087	1.5416	28.292	3	1	Median	0.82913	0.79677	36.083	3	1	Median	0.8041	0.84655	32.408	4	3	Median	3748900000	1809700000	1939100000	1173800000	413910000	759910000	1433200000	645350000	787800000	572200000	382380000	189820000	569680000	368080000	201600000	16925	2106	16046	102597;102598;102599;102600;102601;102602;102603;102604;102605;102606;102607;102608;102609	138529;138530;138531;138532;138533;138534;138535;138536;138537;138538;138539;138540;138541;138542;138543;138544;138545;138546	138545			18	
FTLLQSVHIYKK	2	Unmodified	1475.85	0.85003529	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	69.335	60.413	4	2.5882E-07	32852	160513_QHF_FH_JSI11Kac_6	110.31	89.353			0.87498	0.92914	44.257	4	4	Median	2.1109	1.8245	NaN	1	1	Median	0.71937	0.85187	NaN	1	1	Median	1.0642	1.0134	NaN	1	1	Median	0.59772	0.63927	NaN	1	1	Median	192960000	90932000	102030000	38157000	12107000	26050000	62815000	34763000	28052000	49789000	23237000	26552000	42202000	20824000	21378000	16926	2106	16047	102610;102611;102612;102613	138547;138548;138549;138550	138547			4	
FTLNLQQ	0	Unmodified	862.45487	0.45486751	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.45	65.849	1;2	0.0002349	59933	160511_QHF_FH_JSI12i_1	143.02	74.621			0.89133	0.91197	16.798	8	0	Median	1.1089	0.92284	7.8702	2	0	Median	0.70274	0.8257	29.338	2	0	Median	0.9126	0.8861	15.967	2	0	Median	0.79183	0.80573	23.71	2	0	Median	578210000	306960000	271250000	131010000	63759000	67254000	163480000	97281000	66200000	158640000	74774000	83868000	125080000	71148000	53931000	16927	2294	16048	102614;102615;102616;102617;102618;102619;102620;102621	138551;138552;138553;138554;138555;138556;138557	138556			7	
FTLNPNPTGVQNPHIER	0	Unmodified	1932.9806	0.98060855	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		54.984	54.208	3	2.8576E-05	45181	160511_QHF_FH_JSI10i_3	65.905	55.77			1.2023	1.2407	6.1035	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1258	1.2954	NaN	1	0	Median	1.284	1.1882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	158950000	78290000	80657000	0	0	0	71792000	34278000	37514000	87155000	44012000	43143000	0	0	0	16928	1575	16049	102622;102623	138558	138558			1	
FTLPPLVFAAYQLAFR	0	Unmodified	1853.024	0.023976912	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	14.9	2.08				2					7	1		4	4	101.28	91.9	2;3	4.0062E-32	50613	160513_QHF_FH_JSI12Kac_6	161.62	121.7			1.1335	1.1598	7.8789	5	3	Median	1.2623	1.0887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0158	0.99131	NaN	1	1	Median	1.1437	1.1991	1.6977	3	2	Plateau	9883000000	4823200000	5059800000	1936900000	814730000	1122200000	0	0	0	5000800000	2643300000	2357500000	2945200000	1365100000	1580100000	16929	4212	16050	102624;102625;102626;102627;102628;102629;102630;102631;102632	138559;138560;138561;138562;138563;138564;138565;138566;138567;138568;138569	138566			11	
FTLRDEGK	1	Unmodified	964.49779	0.49779495	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							4	3	3	1	20.357	19.621	2;3	0.0023828	15994	160511_QHF_FH_JSI10i_3	59.245	9.8271			0.86874	0.96783	52.944	11	2	Median	1.7683	1.4761	81.29	4	2	Median	0.86874	0.98846	10.489	3	0	Median	0.57686	0.56202	24.831	3	0	Plateau	0.93935	0.96783	NaN	1	0	Median	3456500000	1712300000	1744200000	1367700000	613230000	754430000	1074000000	539020000	534930000	878700000	493300000	385390000	136180000	66740000	69441000	16930	1069;3467	16051	102633;102634;102635;102636;102637;102638;102639;102640;102641;102642;102643	138570;138571;138572;138573;138574;138575;138576;138577;138578;138579;138580;138581;138582;138583;138584	138575			15	
FTLSGGNWNTVSETAK	1	Unmodified	1710.8213	0.82131394	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	3	2	2	66.456	65.598	2	7.0214E-30	58111	160511_QHF_FH_JSI10i_2	186.13	165.35			1.0337	1.0062	13.976	8	2	Median	1.2186	1.024	NaN	1	0	Median	0.82018	0.96512	23.746	3	2	Median	1.0337	0.99835	4.3676	2	0	Median	1.0092	1.0586	9.6728	2	0	Median	591920000	268680000	323230000	69912000	22176000	47737000	114520000	51796000	62727000	184570000	91239000	93330000	222910000	103470000	119440000	16931	2669	16052	102644;102645;102646;102647;102648;102649;102650;102651	138585;138586;138587;138588;138589;138590;138591;138592;138593;138594;138595;138596;138597;138598;138599;138600	138597			16	
FTLTGLKPDTTYDIK	2	Unmodified	1711.9033	0.90325265	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	71.396	71.099	2	0.01299	61671	160511_QHF_FH_JSI12i_3	85.845	66.602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8468600	8468600	0	0	0	0	0	0	0	0	0	0	8468600	8468600	0	16932	971	16053	102652	138601	138601			1	
FTLTQSEADADILFNFSHFK	1	Unmodified	2330.1219	0.12191263	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	101.45	101.39	3	9.2188E-211	88111	160511_QHF_FH_JSI12i_3	329.64	308.63			1.4515	1.3511	17.302	4	1	Median	1.6455	1.4065	NaN	1	0	Median	0.93526	1.1341	NaN	1	1	Median	1.2803	1.2978	NaN	1	0	Median	1.6665	1.7151	NaN	1	0	Median	1098400000	516770000	581650000	175680000	71645000	104030000	227650000	132810000	94834000	257340000	115790000	141550000	437760000	196530000	241230000	16933	2509	16054	102653;102654;102655;102656	138602;138603;138604;138605;138606;138607	138606			6	
FTLWWSPTINR	0	Unmodified	1419.7299	0.72992016	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	88.83	80.546	2	1.0278E-19	44628	160513_QHF_FH_JSI11Kac_6	163.16	113.74			1.2552	1.1752	55.603	4	1	Median	1.1931	1.0133	NaN	1	1	Median	0.93202	1.1085	NaN	1	0	Median	1.3204	1.2459	NaN	1	0	Median	3.1731	3.3573	NaN	1	0	Median	742060000	320690000	421370000	97814000	41099000	56715000	329140000	164810000	164330000	134980000	56460000	78524000	180120000	58322000	121800000	16934	3101	16055	102657;102658;102659;102660;102661	138608;138609;138610;138611;138612;138613	138609			6	
FTLYENK	1	Unmodified	913.45453	0.45453316	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	37.026	36.592	2	0.013958	31300	160511_QHF_FH_JSI12i_2	58.286	34.314			0.52992	0.53529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52992	0.53529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114130000	83645000	30484000	0	0	0	0	0	0	114130000	83645000	30484000	0	0	0	16935	4604	16056	102662;102663	138614;138615	138614			2	
FTMELAK	1	Unmodified	838.42588	0.42587556	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	46.688	45.773	2	0.010183	39158	160511_QHF_FH_JSI12i_2	81.297	64.37			1.1831	1.234	43.768	5	1	Median	1.4511	1.2343	NaN	1	0	Median	0.79477	0.97909	NaN	1	0	Median	0.90402	0.91916	NaN	1	0	Median	1.7107	1.8415	56.615	2	1	Median	820620000	368970000	451650000	142960000	56166000	86792000	187340000	93415000	93927000	292500000	141690000	150800000	197820000	77694000	120130000	16936	762	16057	102664;102665;102666;102667;102668	138616;138617;138618	138616			3	
FTMVQVWPVR	0	Unmodified	1261.6641	0.66414878	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	85.062	81.873	2	2.4015E-24	40983	160513_QHF_FH_JSI9Kac_6	175.44	140.15			1.013	1.0133	17.938	12	1	Median	1.5692	1.3592	14.709	3	0	Median	0.99546	1.1155	19.969	3	0	Median	1.0123	0.96965	9.4075	3	0	Median	0.83788	0.88797	7.4018	3	1	Median	3273200000	1548400000	1724700000	549910000	213150000	336770000	1149600000	578370000	571200000	946540000	452990000	493540000	627150000	303910000	323240000	16937	1479	16058	102669;102670;102671;102672;102673;102674;102675;102676;102677;102678;102679;102680	138619;138620;138621;138622;138623;138624;138625;138626;138627;138628;138629;138630;138631	138628			13	
FTMVQVWPVR	0	Oxidation (M)	1277.6591	0.6590634	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	16	0									6	2	1	1	2	73.572	64.868	2	4.6532E-07	33820	160513_QHF_FH_JSI12Kac_6	109.71	90.934			1.4301	1.2336	21.971	5	2	Median	1.4509	1.2636	3.4029	2	1	Median	1.0143	1.197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1638	1.2462	43.583	2	1	Median	164130000	71684000	92446000	67444000	27228000	40216000	47139000	22020000	25119000	0	0	0	49547000	22435000	27112000	16938	1479	16058	102681;102682;102683;102684;102685;102686	138632;138633;138634;138635;138636	138636		1147	4	
FTNLLTSILDSAETK	1	Unmodified	1651.8669	0.86686715	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	4	3	5	101.96	101.88	2;3	9.8374E-40	84468	160511_QHF_FH_JSI10i_3	198.32	176.95			0.9609	0.86436	30.432	13	1	Median	1.1143	0.94862	21.141	2	0	Median	0.88531	1.0723	42.27	4	0	Median	1.3639	1.2827	38.102	3	1	Plateau	0.71995	0.80516	15.355	4	0	Median	3204000000	1649800000	1554200000	279240000	129900000	149330000	510920000	299160000	211760000	697910000	298570000	399340000	1715900000	922170000	793720000	16939	2757	16059	102687;102688;102689;102690;102691;102692;102693;102694;102695;102696;102697;102698;102699;102700	138637;138638;138639;138640;138641;138642;138643;138644;138645;138646;138647;138648;138649;138650;138651;138652;138653	138643			15	
FTNLLTSILDSAETKN	1	Unmodified	1765.9098	0.90979459	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							4	4	4	3	101.87	101.78	2;3	0	84370	160511_QHF_FH_JSI10i_3	381.8	340.4			0.91836	0.95119	25.676	15	2	Median	1.1861	1.0141	36.369	4	2	Median	0.8397	1.014	11.073	4	0	Median	1.1342	1.0676	27.414	4	0	Linear	0.75896	0.82994	7.1207	3	0	Median	4500100000	2342900000	2157200000	596810000	257900000	338910000	1179400000	650330000	529060000	1474900000	699290000	775580000	1249100000	735420000	513650000	16940	2757	16060	102701;102702;102703;102704;102705;102706;102707;102708;102709;102710;102711;102712;102713;102714;102715	138654;138655;138656;138657;138658;138659;138660;138661;138662;138663;138664;138665;138666;138667;138668;138669;138670	138659			17	
FTNMLGQPGSTALDLFK	1	Unmodified	1838.9237	0.92367052	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	100.36	100.23	2;3	1.3558E-16	88737	160511_QHF_FH_JSI10i_2	208.68	199.67			1.1726	1.1712	38.832	7	1	Median	0.89924	0.78431	NaN	1	0	Median	1.4958	1.7852	59.975	2	1	Median	1.3737	1.368	21.966	2	0	Median	1.0741	1.197	14.848	2	0	Median	404410000	218450000	185970000	57114000	31789000	25325000	90354000	44513000	45841000	149400000	82227000	67174000	107550000	59917000	47628000	16941	521	16061	102716;102717;102718;102719;102720;102721;102722	138671;138672;138673;138674;138675;138676;138677;138678;138679;138680	138679			10	
FTNMMMIGGNK	1	Unmodified	1242.5559	0.55592023	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	6.6		1							2		1	1	1	60.03	54.504	2	0.00074566	46736	160511_QHF_FH_JSI12i_2	81.263	57.308			6.4567	6.4659	89.074	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.088	12.139	NaN	1	1	Median	3.1854	3.4442	NaN	1	1	Median	294250000	55237000	239020000	0	0	0	0	0	0	54319000	3935500	50383000	239930000	51302000	188630000	16942	5532	16062	102723;102724;102725	138681;138682;138683	138681			3	
FTNSDTPTSFNHMDSDK	1	Unmodified	1942.8003	0.8003205	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	3	4	1	36.919	36.206	3	3.5331E-06	31393	160511_QHF_FH_JSI9i_2	102.08	97.084			1.0594	1.1164	42.419	10	7	Median	0.83937	0.7208	16.61	2	2	Median	1.0772	1.2549	52.847	3	2	Median	1.2548	1.2408	49.052	4	3	Median	1.0418	1.1333	NaN	1	0	Median	668430000	350640000	317790000	111100000	63264000	47836000	192120000	107960000	84162000	281870000	132170000	149700000	83345000	47249000	36096000	16943	3660	16063	102726;102727;102728;102729;102730;102731;102732;102733;102734;102735	138684;138685;138686;138687;138688;138689;138690;138691;138692;138693	138688			10	
FTNSLTTVGSNKK	2	Unmodified	1395.7358	0.73579339	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.493	24.154	3	0.017729	19505	160511_QHF_FH_JSI9i_3	38.799	31.075			2.0175	1.6636	NaN	1	1	Median	2.0175	1.6636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32117000	11548000	20569000	32117000	11548000	20569000	0	0	0	0	0	0	0	0	0	16944	3420	16064	102736	138694	138694			1	
FTNSNTPNSYNHMDPDK	1	Unmodified	1980.8272	0.82720395	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	27.152	26.226	3	6.4714E-06	21885	160511_QHF_FH_JSI12i_2	91.457	80.669			0.65396	0.71094	28.665	5	2	Median	0.75803	0.64196	51.976	2	2	Median	0.54957	0.67992	NaN	1	0	Median	0.852	0.86034	NaN	1	0	Median	0.65396	0.71094	NaN	1	0	Median	398410000	207160000	191250000	105450000	56327000	49127000	88956000	37866000	51090000	123280000	70007000	53268000	80723000	42958000	37765000	16945	2906	16065	102737;102738;102739;102740;102741	138695;138696;138697;138698;138699;138700	138695			6	
FTNTQITEHYSTCIK	1	Unmodified	1841.8618	0.86179854	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9	7		2							2		2	2		47.627	42.284	3	0.0049661	37357	160511_QHF_FH_JSI10i_2	41.912	31.058			0.43777	0.48575	58.981	2	1	Median	NaN	NaN	NaN	0	0	Median	0.26261	0.3201	NaN	1	0	Median	0.72977	0.73712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44233000	36178000	8054800	0	0	0	39485000	33122000	6363100	4747800	3056100	1691700	0	0	0	16946	2594	16066	102742;102743;102744;102745	138701;138702;138703;138704	138703			4	
FTPGTFTNQIQAAFR	0	Unmodified	1697.8526	0.85255449	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	87.263	86.629	2	5.7632E-10	77231	160511_QHF_FH_JSI11i_3	149.96	118.54			0.76824	0.803	11.457	8	1	Median	0.89512	0.74435	12.932	2	0	Median	0.76598	0.90652	1.35	2	0	Median	0.76329	0.7461	8.1891	2	0	Median	0.73132	0.75384	11.284	2	1	Median	411050000	232290000	178760000	131890000	71216000	60679000	128440000	79281000	49160000	107700000	57729000	49973000	43011000	24063000	18948000	16947	917	16067	102746;102747;102748;102749;102750;102751;102752;102753	138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715;138716;138717;138718	138705			14	
FTPLPEGK	1	Unmodified	887.47527	0.4752686	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	1	3	2	36.167	33.176	2	0.0055642	29231	160511_QHF_FH_JSI9i_1	65.252	49.813			0.77529	0.82683	27.024	8	1	Median	0.7294	0.6071	49.152	2	1	Median	0.74726	0.89155	NaN	1	0	Median	0.79918	0.78675	25.054	3	0	Median	0.78807	0.82683	4.622	2	0	Median	972400000	594030000	378380000	323100000	220330000	102770000	184340000	111590000	72754000	364650000	205730000	158920000	100310000	56374000	43933000	16948	575	16068	102754;102755;102756;102757;102758;102759;102760;102761	138719;138720;138721;138722;138723	138720			5	
FTPPLEDSCFHYGFNSNYLK	1	Unmodified	2435.0892	0.089232298	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			85.384	84.772	3	0.0069468	75363	160511_QHF_FH_JSI10i_2	36.805	23.177			1.1171	1.4071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1171	1.4071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40794000	20977000	19817000	0	0	0	40794000	20977000	19817000	0	0	0	0	0	0	16949	862	16069	102762	138724	138724			1	
FTPVASK	1	Unmodified	748.41194	0.41194006	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	16.686	16.073	2	0.027977	13097	160511_QHF_FH_JSI12i_2	55.676	28.714			0.69936	0.79124	4.1625	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65868	0.76829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74255	0.81487	NaN	1	1	Median	427460000	240170000	187290000	0	0	0	245570000	148650000	96919000	0	0	0	181890000	91514000	90371000	16950	2723	16070	102763;102764	138725;138726	138725			2	
FTPVASKFSPGAPGGSGSQPNQK	2	Acetyl (K)	2287.1233	0.12330962	2723	Q15942	ZYX	Zyxin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.988						2	3	4	2	1	4	2	4	69.149	58.784	3	1.516E-05	31916	160513_QHF_FH_JSI12Kac_4	72.145	61.002			0.70123	0.68364	52.858	9	0	Median	1.5768	1.3408	NaN	1	0	Median	1.17	1.3915	28.7	3	0	Plateau	0.65432	0.64391	8.1247	2	0	Median	0.61832	0.68364	13.283	3	0	Plateau	82655000	46645000	36010000	8671300	2922900	5748400	20311000	8930800	11380000	32258000	19780000	12478000	21415000	15012000	6403000	16951	2723	16071	102765;102766;102767;102768;102769;102770;102771;102772;102773;102774;102775	138727;138728;138729;138730;138731;138732;138733;138734;138735;138736;138737;138738;138739;138740	138731	2648		13	
FTPVDESVTFIGR	0	Unmodified	1466.7405	0.74054442	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	74.258	73.313	2	0.0010966	63257	160511_QHF_FH_JSI12i_2	65.574	50.602			0.99003	1.0461	12.078	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97221	0.9605	NaN	1	1	Median	1.0082	1.1394	NaN	1	0	Median	93546000	40290000	53256000	0	0	0	0	0	0	46851000	24158000	22693000	46695000	16132000	30563000	16952	2302	16072	102776;102777;102778	138741;138742;138743;138744	138741			4	
FTQADVDSGR	0	Unmodified	1094.4993	0.49925152	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	17.852	17.362	2	1.1027E-05	15109	160511_QHF_FH_JSI10i_1	104.01	90.018			1.1128	1.1742	32.197	5	0	Median	0.75534	0.65299	NaN	1	0	Median	1.0625	1.2603	13.975	2	0	Median	1.4954	1.4701	NaN	1	0	Median	1.1128	1.1742	NaN	1	0	Median	352160000	183400000	168760000	19560000	9808600	9751400	123510000	73335000	50180000	118160000	58514000	59643000	90930000	41747000	49183000	16953	3146	16073	102779;102780;102781;102782;102783	138745	138745			1	
FTQAGSEVSALLGR	0	Unmodified	1434.7467	0.74669243	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.87	6.41		12	3					3	5	6	5	7	5	70.443	66.67	2;3	3.4469E-22	58030	160511_QHF_FH_JSI12i_2	182.08	167.88			1.0368	1.0625	76.305	23	13	Median	1.1022	0.90353	39.048	6	3	Median	1.3146	1.5476	106.22	5	5	Median	1.0851	1.0625	102.56	7	4	Median	0.90918	1.0043	35.035	5	1	Median	18074000000	8782000000	9292000000	2822100000	1277900000	1544200000	4734300000	2673000000	2061300000	6971600000	2849600000	4122000000	3546100000	1981600000	1564500000	16954	851	16074	102784;102785;102786;102787;102788;102789;102790;102791;102792;102793;102794;102795;102796;102797;102798;102799;102800;102801;102802;102803;102804;102805;102806	138746;138747;138748;138749;138750;138751;138752;138753;138754;138755;138756;138757;138758;138759;138760;138761;138762;138763;138764;138765;138766;138767;138768;138769;138770;138771;138772;138773;138774;138775;138776	138748			31	
FTQDTQPHYIYSPR	0	Unmodified	1751.8267	0.82673367	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0			By MS/MS		3	0			3									3		37.763	37.763	2;3	7.6859E-07	33125	160511_QHF_FH_JSI11i_3	117.48	110.43			0.99065	0.91249	3.8707	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99065	0.91249	3.8707	2	2	Median	NaN	NaN	NaN	0	0	Median	380280000	237240000	143030000	0	0	0	0	0	0	380280000	237240000	143030000	0	0	0	16955	2517	16075	102807;102808;102809	138777;138778;138779	138777			3	
FTQHQNTVK	1	Unmodified	1101.5567	0.55670682	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.7203	5.8159	2	0.0014448	3385	160511_QHF_FH_JSI12i_3	71.692	30.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16956	2414	16076	102810	138780	138780			1	
FTQISPVWLQLK	1	Unmodified	1458.8235	0.82348619	4504	Q9BWS9	CHID1	Chitinase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.466	91.97	2	7.8157E-05	79401	160511_QHF_FH_JSI12i_2	93.821	78.249			0.68705	0.95389	34.947	4	1	Linear	2.0063	1.76	NaN	1	1	Median	0.74424	0.91507	NaN	1	0	Median	0.79689	0.79382	NaN	1	0	Median	0.89164	0.99437	NaN	1	0	Median	117310000	61852000	55457000	18071000	6594100	11477000	39911000	22152000	17759000	30551000	17766000	12785000	28777000	15340000	13437000	16957	4504	16077	102811;102812;102813;102814	138781;138782;138783;138784;138785;138786;138787	138781			7	
FTQLDLEDVQVR	0	Unmodified	1461.7464	0.74635808	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.2	0.4	4	1								1	3	1		69.337	68.753	2	1.1259E-20	62553	160511_QHF_FH_JSI11i_1	150.46	113.27			0.87393	0.98953	13.711	4	2	Median	1.2363	1.0074	NaN	1	0	Median	0.81956	0.97194	16.339	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	402360000	218650000	183710000	58753000	35526000	23226000	343610000	183130000	160480000	0	0	0	0	0	0	16958	4989	16078	102815;102816;102817;102818;102819	138788;138789;138790;138791;138792	138788			3	
FTQNMMMPIIHYPNEVIVK	1	Unmodified	2304.1469	0.14688729	3802	Q8WWV3	RTN4IP1	Reticulon-4-interacting protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	90.167	89.576	3	4.0158E-06	79491	160511_QHF_FH_JSI10i_2	86.44	70.318			1.5989	1.3612	29.174	3	1	Median	1.5989	1.3612	NaN	1	0	Median	0.84555	1.0532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6954	1.8851	NaN	1	1	Median	96061000	40166000	55895000	21596000	5805700	15790000	40386000	21973000	18412000	0	0	0	34080000	12387000	21693000	16959	3802	16079	102820;102821;102822	138793;138794;138795;138796;138797	138796			5	
FTQQDIDEAK	1	Unmodified	1193.5564	0.55643205	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.605	27.049	2	0.028836	24140	160511_QHF_FH_JSI12i_1	40.058	25.921			0.32985	0.34141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32985	0.34141	NaN	1	0	Median	52664000	37115000	15549000	0	0	0	0	0	0	0	0	0	52664000	37115000	15549000	16960	2900	16080	102823	138798	138798			1	
FTQQNYHDR	0	Unmodified	1207.537	0.53703401	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.7407	7.7895	3	0.00020987	5475	160511_QHF_FH_JSI11i_3	72.2	64.555			0.84827	0.84299	7.4869	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84087	0.79952	NaN	1	0	Median	0.85573	0.88882	NaN	1	0	Median	261350000	153540000	107800000	0	0	0	0	0	0	126420000	75329000	51095000	134920000	78214000	56709000	16961	4559	16081	102824;102825	138799;138800;138801	138799			3	
FTQSGTMK	1	Unmodified	898.42185	0.42185282	1671	P49711;Q8NI51	CTCF;CTCFL	Transcriptional repressor CTCF;Transcriptional repressor CTCFL	yes	no	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		10.319	9.955	2	0.009826	7439	160511_QHF_FH_JSI11i_2	55.676	43.187			0.66498	0.73146	26.726	2	0	Median	NaN	NaN	NaN	0	0	Median	0.49716	0.60551	NaN	1	0	Median	0.88944	0.88362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70381000	37507000	32875000	0	0	0	26931000	17003000	9928500	43450000	20504000	22946000	0	0	0	16962	1671	16082	102826;102827	138802	138802			1	
FTQTSGETTDADKEPAGEDK	2	Unmodified	2125.9288	0.92875171	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	17.741	17.214	3	1.9862E-06	14714	160511_QHF_FH_JSI12i_1	89.483	74.797			0.85607	0.79858	39.518	6	5	Median	0.77148	0.62936	44.922	2	2	Median	0.48287	0.56653	NaN	1	1	Median	1.0341	1.0051	43.771	2	2	Median	0.97037	1.0056	NaN	1	0	Median	355580000	189000000	166580000	97105000	55531000	41575000	47187000	31985000	15202000	131430000	60577000	70858000	79855000	40911000	38944000	16963	1576	16083	102828;102829;102830;102831;102832;102833	138803;138804;138805;138806;138807;138808;138809	138805			7	
FTQVFGVHQMLK	1	Unmodified	1433.7489	0.74894104	3981	Q96B77	TMEM186	Transmembrane protein 186	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	1	2	3	2	61.231	57.363	2;3	0.00017418	50844	160511_QHF_FH_JSI11i_3	98.249	71.735			0.98404	0.96806	99.076	8	8	Median	1.3835	1.1213	NaN	1	1	Median	1.0194	1.1961	50.695	2	2	Median	1.7377	1.611	143.25	3	3	Median	0.32743	0.34383	14.09	2	2	Median	393920000	215740000	178180000	47741000	18744000	28997000	80720000	38250000	42470000	147970000	76960000	71012000	117490000	81782000	35706000	16964	3981	16084	102834;102835;102836;102837;102838;102839;102840;102841	138810;138811;138812;138813;138814;138815;138816;138817	138811			8	
FTREDPTFK	1	Unmodified	1139.5611	0.56112349	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	24.563	23.925	2;3	0.022218	20255	160511_QHF_FH_JSI11i_3	64.42	35.503			2.2907	2.4078	35.813	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6134	1.8691	NaN	1	1	Median	3.2524	3.1017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117810000	41120000	76693000	0	0	0	37164000	15973000	21190000	80649000	25147000	55503000	0	0	0	16965	4221	16085	102842;102843;102844;102845	138818;138819;138820;138821	138819			4	
FTRNEFNLESK	1	Unmodified	1383.6783	0.67827852	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		35.611	34.645	3	1.0764E-05	28229	160511_QHF_FH_JSI9i_3	100.22	85.347			0.90963	0.74952	36.155	3	0	Plateau	0.90963	0.74952	NaN	1	0	Median	0.88456	1.0381	NaN	1	0	Median	1.6378	1.5428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	705930000	339280000	366650000	295420000	112620000	182810000	212390000	126910000	85475000	198120000	99752000	98365000	0	0	0	16966	2009;2722	16086	102846;102847;102848	138822;138823;138824;138825;138826	138826			5	
FTSAGQASK	1	Unmodified	895.43995	0.43994572	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.67	0.471	1	2								1			2	6.8876	6.4106	2	0.0124	4315	160511_QHF_FH_JSI9i_2	47.603	35.698			2.2428	2.3525	30.049	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2428	2.3525	30.049	2	1	Median	76982000	21751000	55231000	0	0	0	0	0	0	0	0	0	76982000	21751000	55231000	16967	3788	16087	102849;102850;102851	138827;138828;138829	138829			3	
FTSDTKPIINK	2	Unmodified	1262.6871	0.68705229	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	1	2	1	26.617	26.142	2;3	0.00014409	21740	160511_QHF_FH_JSI12i_3	87.184	75.972			2.6252	3.0464	119.54	5	4	Median	1.688	1.4652	NaN	1	0	Median	2.6252	3.0464	NaN	1	1	Median	1.3836	1.2949	199.8	2	2	Median	5.6925	5.6754	NaN	1	1	Median	799480000	330220000	469260000	122820000	64244000	58581000	65229000	24808000	40421000	276190000	179480000	96708000	335240000	61688000	273550000	16968	3503	16088	102852;102853;102854;102855;102856;102857	138830;138831;138832;138833;138834;138835	138835			6	
FTSGAFLSPSVSVQECR	0	Unmodified	1870.8883	0.88834765	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.11	66.535	2	0.00017253	58111	160511_QHF_FH_JSI11i_2	72.958	59.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16969	1790	16089	102858	138836	138836			1	
FTSQAEKHLPR	1	Acetyl (K)	1354.6993	0.69934831	4833	Q9HAW4	CLSPN	Claspin	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			36.211	27.655	3	0.00071611	15606	160513_QHF_FH_JSI10Kac_6	76.357	66.824			5.5851	6.6321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.5851	6.6321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18017000	1433100	16583000	0	0	0	18017000	1433100	16583000	0	0	0	0	0	0	16970	4833	16090	102859	138837	138837	3244		1	
FTTEEEVDYTVEK	1	Unmodified	1588.7144	0.71444883	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.409	48.73	2	1.9987E-07	44131	160511_QHF_FH_JSI11i_1	138.63	119.85			0.92108	0.85996	14.023	4	0	Median	0.92719	0.76346	NaN	1	0	Median	0.7191	0.82873	NaN	1	0	Median	0.91501	0.89237	NaN	1	0	Median	1.0508	1.0611	NaN	1	0	Median	388570000	213070000	175500000	71186000	41635000	29552000	116360000	58498000	57861000	86455000	46451000	40004000	114570000	66483000	48086000	16971	5712	16091	102860;102861;102862;102863	138838;138839;138840;138841;138842;138843	138838			6	
FTTGDAMSK	1	Unmodified	956.42733	0.42733213	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	21.595	20.919	2	0.00023016	18048	160511_QHF_FH_JSI11i_1	99.802	81.071			0.71884	0.7843	73.348	8	6	Median	0.49769	0.42488	NaN	1	1	Median	0.39949	0.62919	95.729	3	2	Plateau	0.94012	0.93112	111.32	2	2	Median	0.71884	0.7843	40.804	2	1	Median	2844200000	1377800000	1466400000	87719000	53804000	33915000	795020000	382990000	412040000	839110000	355390000	483720000	1122400000	585660000	536710000	16972	2487	16092	102864;102865;102866;102867;102868;102869;102870;102871;102872	138844;138845;138846;138847;138848;138849;138850;138851;138852;138853;138854	138844			11	
FTTGDAMSK	1	Oxidation (M)	972.42225	0.42224675	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	21.506	21.003	2	0.044056	18408	160511_QHF_FH_JSI12i_1	59.35	48.936			0.17719	0.18338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17719	0.18338	NaN	1	1	Median	110760000	95326000	15433000	0	0	0	0	0	0	0	0	0	110760000	95326000	15433000	16973	2487	16092	102873	138855	138855			1	
FTTNANHVVFNGDGTK	1	Unmodified	1720.8169	0.81689726	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	36.323	36.177	2;3	6.9622E-06	30698	160511_QHF_FH_JSI12i_3	91.475	78.92			0.75999	0.77915	10.661	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75999	0.77915	10.661	2	1	Median	136750000	73022000	63731000	0	0	0	0	0	0	0	0	0	136750000	73022000	63731000	16974	560	16093	102874;102875;102876	138856;138857;138858;138859	138857			4	
FTTYEIR	0	Unmodified	928.46543	0.46543219	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	2	1	38.712	34.95	2	0.0075894	29856	160511_QHF_FH_JSI12i_2	86.866	44.093			0.90393	0.94968	15.552	6	0	Median	1.1224	0.96651	12.381	2	0	Median	0.89655	1.1111	NaN	1	0	Median	0.80707	0.78875	9.2097	2	0	Median	0.91138	1.0185	NaN	1	0	Median	816220000	399350000	416880000	156730000	60440000	96291000	210700000	114510000	96193000	281960000	134590000	147370000	166830000	89802000	77025000	16975	419	16094	102877;102878;102879;102880;102881;102882	138860;138861;138862;138863;138864	138860			5	
FTTYEVR	0	Unmodified	914.44978	0.44978213	5430	Q9UMY4	SNX12	Sorting nexin-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	27.66	26.9	2	0.0065547	23214	160511_QHF_FH_JSI9i_2	90.706	57.349			0.9552	0.93122	19.042	5	0	Median	1.1741	1.0328	NaN	1	0	Median	1.0288	1.2356	NaN	1	0	Median	0.84131	0.83481	15.457	2	0	Median	0.7756	0.85248	NaN	1	0	Median	750530000	408650000	341880000	129290000	61382000	67911000	147880000	71125000	76752000	292840000	171250000	121600000	180520000	104900000	75620000	16976	5430	16095	102883;102884;102885;102886;102887	138865;138866;138867;138868	138865			4	
FTVAELK	1	Unmodified	806.4538	0.45380487	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.386	46.404	2	0.017817	39726	160511_QHF_FH_JSI12i_2	60.895	20.792			1.0561	1.15	5.9776	4	0	Median	1.3351	1.1369	NaN	1	0	Median	0.96081	1.1633	NaN	1	0	Median	1.1608	1.203	NaN	1	0	Median	0.93711	1.0457	NaN	1	0	Median	1075500000	532010000	543510000	170380000	70594000	99788000	241060000	126590000	114460000	411390000	203550000	207830000	252690000	131270000	121420000	16977	2412	16096	102888;102889;102890;102891	138869;138870;138871;138872;138873	138869			5	
FTVAMSPELIQQFLQATVSGLHETQPPSVR	0	Unmodified	3310.702	0.70199743	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.27	103.27	4	3.3859E-11	90014	160511_QHF_FH_JSI12i_3	77.065	71.098			0.92681	0.96803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92681	0.96803	NaN	1	1	Median	17807000	11668000	6139800	0	0	0	0	0	0	0	0	0	17807000	11668000	6139800	16978	4193	16097	102892	138874	138874			1	
FTVDLPK	1	Unmodified	818.4538	0.45380487	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	2	4	3	59.132	55.58	2	0.019269	48734	160511_QHF_FH_JSI9i_2	58.604	23.499			0.95855	0.9374	8.095	11	0	Median	1.1548	0.9568	4.7374	2	0	Median	0.7697	0.92855	1.3428	2	0	Median	1.0001	0.97647	11.12	4	0	Median	0.84758	0.9632	10.674	3	0	Median	1835900000	904380000	931550000	297070000	145680000	151390000	474370000	240590000	233770000	588160000	297470000	290690000	476330000	220640000	255690000	16979	2010	16098	102893;102894;102895;102896;102897;102898;102899;102900;102901;102902;102903	138875;138876;138877;138878;138879;138880;138881;138882;138883;138884	138882			10	
FTVDLPKK	2	Unmodified	946.54877	0.54876789	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	2	3	2	42.802	42.09	2;3	0.0013499	35743	160511_QHF_FH_JSI12i_3	65.246	40.352			1.354	1.2405	34.692	10	2	Median	2.3282	2.0225	64.235	3	2	Plateau	1.1501	1.3745	26.171	2	0	Median	1.2629	1.1857	5.3363	3	0	Median	1.5068	1.5389	2.4516	2	0	Median	1250900000	524240000	726680000	137900000	64409000	73487000	146480000	75531000	70945000	355090000	146940000	208150000	611450000	237350000	374100000	16980	2010	16099	102904;102905;102906;102907;102908;102909;102910;102911;102912;102913	138885;138886;138887;138888;138889;138890;138891;138892;138893;138894;138895;138896;138897;138898;138899	138898			15	
FTVETASR	0	Unmodified	909.4556	0.45559579	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	23.064	22.215	2	0.042344	19048	160511_QHF_FH_JSI9i_2	38.962	8.7774			1.4956	1.2363	12.505	4	0	Linear	1.3146	1.1346	NaN	1	0	Median	0.8816	1.0523	NaN	1	0	Median	1.3315	1.3471	NaN	1	0	Median	1.2093	1.3487	NaN	1	0	Median	414010000	197800000	216210000	97168000	46953000	50215000	63899000	38646000	25253000	156050000	67691000	88359000	96894000	44508000	52386000	16981	999	16100	102914;102915;102916;102917	138900;138901;138902;138903	138902			4	
FTVISVPHLPEK	1	Unmodified	1365.7656	0.76563696	3775	Q8WV41	SNX33	Sorting nexin-33	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	69.777	69.124	3	0.00094865	61408	160511_QHF_FH_JSI10i_2	55.04	35.909			1.0376	0.92101	19.499	5	0	Median	1.0694	0.92101	NaN	1	0	Median	0.5317	0.627	NaN	1	0	Median	1.0376	0.95208	NaN	1	0	Median	0.86341	0.88908	19.033	2	0	Median	97342000	51457000	45885000	11543000	7205500	4337700	16137000	9663200	6474200	28421000	12811000	15611000	41240000	21778000	19462000	16982	3775	16101	102918;102919;102920;102921;102922	138904;138905;138906	138906			3	
FTVLFPSGTPLPAR	0	Unmodified	1501.8293	0.82929985	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	89.288	88.88	2	1.4744E-21	78951	160511_QHF_FH_JSI10i_2	177.57	159.26			1.0052	0.9852	23.913	6	0	Median	1.0979	0.97903	NaN	1	0	Median	0.80059	0.96673	NaN	1	0	Median	1.1463	1.1319	23.134	2	0	Median	1.2161	1.3011	38.44	2	0	Median	301470000	136410000	165060000	48277000	25197000	23080000	49268000	23538000	25730000	115680000	47192000	68486000	88243000	40482000	47760000	16983	2291	16102	102923;102924;102925;102926;102927;102928;102929	138907;138908;138909;138910;138911;138912;138913;138914;138915;138916;138917	138915			11	
FTVLLMPNGPMR	0	Unmodified	1374.7152	0.71519807	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.75		8	4					2	9	7	7	5	4	85.375	80.754	2;3	2.2393E-31	70164	160511_QHF_FH_JSI9i_3	189.7	173.82			0.97206	1.0173	26.117	23	9	Median	1.2639	1.0703	30.487	7	2	Median	0.84037	1.0173	28.444	7	3	Median	1.1918	1.119	23.391	5	3	Median	0.75593	0.82377	13.039	4	1	Median	9955300000	4787000000	5168300000	1376300000	515100000	861150000	3290900000	1713500000	1577400000	4314200000	2061300000	2252900000	973950000	497170000	476780000	16984	5475	16103	102930;102931;102932;102933;102934;102935;102936;102937;102938;102939;102940;102941;102942;102943;102944;102945;102946;102947;102948;102949;102950;102951;102952	138918;138919;138920;138921;138922;138923;138924;138925;138926;138927;138928;138929;138930;138931;138932;138933;138934;138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945;138946;138947;138948;138949;138950	138930			33	
FTVLLMPNGPMR	0	Oxidation (M)	1390.7101	0.71011269	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.9		3	7				1	10	12	9	9	5	10	78.367	70.645	2;3	1.0094E-19	39657	160513_QHF_FH_JSI10Kac_6	159.37	141.93			1.112	1.0823	28.465	28	5	Median	1.3053	1.0886	22.526	8	1	Median	0.93101	1.085	39.721	7	1	Median	1.0337	1.0153	29.187	5	1	Median	1.0539	1.1457	23.094	8	2	Median	2644300000	1286000000	1358300000	676650000	311430000	365220000	885520000	460470000	425050000	526360000	241800000	284560000	555790000	272330000	283460000	16985	5475	16103	102953;102954;102955;102956;102957;102958;102959;102960;102961;102962;102963;102964;102965;102966;102967;102968;102969;102970;102971;102972;102973;102974;102975;102976;102977;102978;102979;102980;102981;102982;102983;102984;102985	138951;138952;138953;138954;138955;138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966;138967;138968;138969;138970;138971;138972;138973;138974;138975;138976;138977;138978;138979;138980;138981;138982;138983;138984;138985;138986;138987;138988;138989	138987		2670;2671	39	
FTVLLMPNGPMR	0	2 Oxidation (M)	1406.705	0.70502731	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	3.02			1				3	7	5	4	4	2	6	71.594	62.058	2;3	1.7917E-19	32259	160513_QHF_FH_JSI9Kac_5	152.34	135.8			1.2582	1.1286	27.002	16	2	Median	1.2868	1.0842	22.582	4	1	Median	0.91979	1.1121	8.8854	4	0	Median	1.4941	1.4164	25.109	2	0	Median	1.2807	1.3535	37.689	6	1	Median	525960000	252380000	273580000	150930000	63841000	87090000	179350000	97103000	82246000	70715000	32868000	37847000	124960000	58564000	66400000	16986	5475	16103	102986;102987;102988;102989;102990;102991;102992;102993;102994;102995;102996;102997;102998;102999;103000;103001	138990;138991;138992;138993;138994;138995;138996;138997;138998;138999;139000;139001;139002;139003;139004;139005;139006;139007;139008;139009;139010;139011;139012;139013	138991		2670;2671	24	
FTVLNQTWVLK	1	Unmodified	1347.7551	0.75507227	3178	Q6ZMK1	CYHR1	Cysteine and histidine-rich protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	16	0									3	1		1	1	84.662	75.539	2	0.0027303	41846	160513_QHF_FH_JSI11Kac_6	68.893	50.581			1.1507	1.2264	42.185	3	0	Median	1.1507	1.0093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3479	2.265	NaN	1	0	Median	1.1326	1.2264	NaN	1	0	Median	59548000	23157000	36391000	28339000	12843000	15496000	0	0	0	22592000	7120400	15471000	8616800	3193800	5423000	16987	3178	16104	103002;103003;103004	139014	139014			1	
FTVNLSGCPR	0	Unmodified	1149.5601	0.56007764	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.711	49.315	2	0.0022972	42226	160511_QHF_FH_JSI12i_2	60.717	35.794			1.5417	1.7522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5417	1.7522	NaN	1	0	Median	48571000	18759000	29813000	0	0	0	0	0	0	0	0	0	48571000	18759000	29813000	16988	4416	16105	103005	139015	139015			1	
FTVPMLK	1	Unmodified	834.46735	0.46734645	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	2	3	2	66.587	65.903	2	0.0036275	56902	160511_QHF_FH_JSI12i_2	103.29	78.287			1.0424	1.0508	7.9675	9	1	Median	1.2492	1.0347	9.3951	2	1	Median	0.84128	1.0072	8.7088	2	0	Median	1.0424	1.0729	9.5501	3	0	Plateau	1.0323	1.1013	6.632	2	0	Median	3949500000	1933400000	2016100000	731960000	292350000	439610000	855080000	461090000	394000000	1522600000	759380000	763200000	839840000	420560000	419280000	16989	1023	16106	103006;103007;103008;103009;103010;103011;103012;103013;103014	139016;139017;139018;139019;139020;139021;139022;139023;139024;139025;139026;139027;139028	139019			13	
FTVPMLK	1	Oxidation (M)	850.46226	0.46226107	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.836	55.893	2	0.019592	48307	160511_QHF_FH_JSI11i_2	68.485	50.637			0.94715	0.9271	13.685	4	0	Median	1.1478	0.97509	NaN	1	0	Median	0.68001	0.85901	NaN	1	0	Median	0.88436	0.88146	NaN	1	0	Median	1.0144	1.1615	NaN	1	0	Median	162000000	85824000	76178000	21744000	9568600	12176000	40901000	22758000	18144000	52176000	28519000	23656000	47181000	24978000	22202000	16990	1023	16106	103015;103016;103017;103018	139029	139029		614	1	
FTVSWYYR	0	Unmodified	1120.5342	0.53418046	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	75.153	66.683	2	5.4718E-16	36047	160513_QHF_FH_JSI11Kac_6	161.6	128.71			1.1576	1.0938	7.5575	4	0	Median	1.2572	1.0587	NaN	1	0	Median	0.87421	1.0439	NaN	1	0	Median	1.2958	1.2319	NaN	1	0	Median	1.0659	1.13	NaN	1	0	Median	1328200000	659710000	668490000	213190000	92337000	120850000	703240000	370240000	333000000	234780000	108600000	126190000	176990000	88533000	88454000	16991	5207	16107	103019;103020;103021;103022	139030;139031;139032;139033;139034;139035;139036;139037;139038	139030			9	
FTVVVATQLPESTSLR	0	Unmodified	1746.9516	0.95159983	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.14	80.253	2	9.2268E-07	69275	160511_QHF_FH_JSI12i_2	121.04	106.88			0.97695	1.0326	8.9311	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95104	0.96936	NaN	1	0	Median	1.0036	1.0999	NaN	1	1	Median	45776000	24095000	21681000	0	0	0	0	0	0	23323000	12619000	10704000	22453000	11476000	10977000	16992	2442	16108	103023;103024	139039;139040;139041	139039			3	
FTVVVLR	0	Unmodified	832.51707	0.51707383	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.87		2	3				2	5	4	4	4	4	4	66.351	59.158	2	1.6331E-17	31374	160513_QHF_FH_JSI9Kac_6	172.39	90.132			1.0109	1.0223	28.733	16	1	Median	1.0759	0.91507	36.223	4	0	Median	0.84449	0.99733	12.944	4	0	Median	1.2924	1.2323	31.272	4	0	Median	0.91968	0.98923	31.663	4	1	Median	7684100000	3741100000	3943000000	1595000000	746280000	848710000	2111300000	1205200000	906120000	2778500000	1243400000	1535100000	1199300000	546240000	653030000	16993	1604	16109	103025;103026;103027;103028;103029;103030;103031;103032;103033;103034;103035;103036;103037;103038;103039;103040	139042;139043;139044;139045;139046;139047;139048;139049;139050;139051;139052;139053;139054;139055;139056;139057;139058	139054			17	
FTVWLHGVLDK	1	Unmodified	1313.7132	0.71320746	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			79.689	76.14	3	0.0021814	40103	160513_QHF_FH_JSI10Kac_6	61.11	35.068			0.48146	0.57181	18.856	2	1	Median	NaN	NaN	NaN	0	0	Median	0.48146	0.57181	18.856	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58372000	30151000	28220000	0	0	0	58372000	30151000	28220000	0	0	0	0	0	0	16994	3128	16110	103041;103042	139059;139060	139060			2	
FTYLGSQDR	0	Unmodified	1085.5142	0.5141733	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	30.974	30.436	2	5.7799E-06	26732	160511_QHF_FH_JSI10i_2	114.5	70.051			0.88523	0.96936	16.666	8	1	Median	0.84117	0.73791	NaN	1	0	Median	0.95234	1.1381	6.6828	2	0	Median	0.84972	0.85675	14.374	3	1	Plateau	0.83543	0.88102	1.7834	2	0	Median	748370000	388580000	359790000	126230000	69869000	56364000	165570000	85018000	80553000	272110000	127270000	144840000	184450000	106410000	78033000	16995	3250	16111	103043;103044;103045;103046;103047;103048;103049;103050	139061;139062;139063;139064;139065;139066;139067;139068;139069	139069			9	
FVAASHQVAELVK	1	Unmodified	1397.7667	0.76669959	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		44.748	44.748	2	5.4725E-06	39470	160511_QHF_FH_JSI11i_3	126.19	99.079			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10589000	10589000	0	0	0	0	0	0	0	10589000	10589000	0	0	0	0	16996	3087	16112	103051	139070	139070			1	
FVADGIFK	1	Unmodified	895.48035	0.48035398	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.54	4	4	4				1	4	3	4	5	5	6	59.652	55.431	2	0.00063796	47938	160511_QHF_FH_JSI11i_2	101.64	74.681			1.0935	0.99223	25.541	19	2	Median	1.1504	0.95645	3.6665	4	0	Median	0.83061	0.96975	10.17	5	0	Median	1.1597	1.1531	23.225	5	0	Median	0.7416	0.77647	38.452	5	2	Linear	15097000000	7322900000	7774000000	2756800000	1329400000	1427400000	3683300000	1849000000	1834300000	4570100000	2272700000	2297400000	4086800000	1871900000	2214900000	16997	1227	16113	103052;103053;103054;103055;103056;103057;103058;103059;103060;103061;103062;103063;103064;103065;103066;103067;103068;103069;103070;103071	139071;139072;139073;139074;139075;139076;139077;139078;139079;139080;139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095;139096;139097;139098;139099;139100;139101;139102;139103;139104;139105;139106	139091			36	
FVADLRK	1	Unmodified	847.49159	0.49158736	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			6							2	2		2	21.497	20.749	2;3	0.0031745	17090	160511_QHF_FH_JSI10i_3	65.777	42.253			1.7069	1.7189	69.06	5	4	Median	4.3111	3.4415	16.586	2	2	Median	0.89038	1.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1379	1.158	55.864	2	1	Median	1939300000	893160000	1046100000	343460000	87462000	256000000	429170000	265400000	163770000	0	0	0	1166700000	540300000	626360000	16998	275	16114	103072;103073;103074;103075;103076;103077	139107;139108;139109;139110;139111;139112	139107			6	
FVAFSGEGQSLR	0	Unmodified	1296.6463	0.64625011	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	1	3	4	2	51.147	48.599	2	1.2139E-10	43083	160511_QHF_FH_JSI11i_3	142.98	123.22			0.81086	0.96447	29.265	9	6	Median	1.1578	0.98713	NaN	1	1	Median	0.60052	0.72589	40.189	2	1	Median	0.79166	0.78234	29.097	4	3	Median	1.0762	1.1436	1.2797	2	1	Median	1240800000	673850000	566940000	195630000	87085000	108540000	200220000	128030000	72193000	597060000	337620000	259440000	247890000	121130000	126760000	16999	3902	16115	103078;103079;103080;103081;103082;103083;103084;103085;103086;103087	139113;139114;139115;139116;139117;139118;139119;139120;139121;139122;139123;139124	139114			11	
FVAHGLMILAR	0	Unmodified	1226.6958	0.69578326	2422	Q13472	TOP3A	DNA topoisomerase 3-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	70.04	61.404	2;3	9.2215E-06	32611	160513_QHF_FH_JSI9Kac_6	84.17	76.283			1.1232	1.2207	17.871	5	0	Median	1.4656	1.2555	NaN	1	0	Median	1.084	1.2901	12.08	2	0	Median	0.90495	0.87069	NaN	1	0	Median	1.1232	1.2207	NaN	1	0	Median	300190000	141020000	159170000	50302000	22217000	28085000	188340000	85090000	103250000	46560000	25561000	20999000	14989000	8155900	6833200	17000	2422	16116	103088;103089;103090;103091;103092	139125;139126;139127;139128;139129	139126			5	
FVALASNEK	1	Unmodified	977.5182	0.51819605	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	26.264	25.415	2	0.00058569	22063	160511_QHF_FH_JSI10i_2	88.294	62.844			2.509	2.7681	50.409	3	3	Median	NaN	NaN	NaN	0	0	Median	2.509	3.0613	NaN	1	1	Median	2.7621	2.7681	NaN	1	1	Median	1.1402	1.2211	NaN	1	1	Median	259880000	98597000	161280000	0	0	0	58230000	16697000	41532000	119230000	44982000	74248000	82421000	36919000	45502000	17001	117	16117	103093;103094;103095	139130;139131;139132	139132			3	
FVAPEEVLPFTEGDILEK	1	Unmodified	2032.0405	0.040474416	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.33	0.471	4	2								1	2	2	1	101.35	101.24	3	3.2333E-07	91982	160511_QHF_FH_JSI10i_1	99.569	90.777			0.93375	0.93032	29.726	6	0	Median	1.2947	1.0597	NaN	1	0	Median	0.84752	1.0199	31.406	2	0	Median	0.67171	0.66811	23.921	2	0	Median	1.0952	1.1275	NaN	1	0	Median	466810000	234670000	232140000	52961000	22499000	30462000	152300000	74409000	77894000	162630000	95419000	67212000	98921000	42345000	56575000	17002	1682	16118	103096;103097;103098;103099;103100;103101	139133;139134;139135	139134			3	
FVASKPLEEEEMEVPVLPK	2	Unmodified	2170.1232	0.12315819	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	76.802	76.46	3	1.7898E-09	68263	160511_QHF_FH_JSI11i_3	116.65	104.69			1.0006	0.99827	38.4	3	1	Median	0.69619	0.59493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3457	1.2597	NaN	1	0	Median	1.0006	0.99827	NaN	1	0	Median	237880000	120110000	117760000	39052000	21342000	17710000	0	0	0	73892000	27620000	46272000	124930000	71152000	53782000	17003	1684	16119	103102;103103;103104	139136;139137;139138;139139;139140	139137			5	
FVASYLEYAFR	0	Unmodified	1364.6765	0.6764876	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.721	75.479	2	9.1014E-12	39919	160513_QHF_FH_JSI12Kac_6	145.17	110.92			0.87614	0.93129	16.515	4	2	Median	0.84484	0.7129	NaN	1	1	Median	0.88394	1.0544	NaN	1	0	Median	0.96661	0.93807	NaN	1	1	Median	0.8684	0.92455	NaN	1	0	Median	358620000	185790000	172830000	126940000	61081000	65862000	122090000	71195000	50894000	68711000	32520000	36191000	40881000	20998000	19883000	17004	4094	16120	103105;103106;103107;103108	139141;139142;139143;139144	139143			4	
FVASYLEYAFRK	1	Unmodified	1492.7715	0.77145062	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			77.289	71.222	3	7.228E-08	38920	160513_QHF_FH_JSI10Kac_6	132.56	115.95			0.33786	0.39936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33786	0.39936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89064000	65094000	23970000	0	0	0	89064000	65094000	23970000	0	0	0	0	0	0	17005	4094	16121	103109	139145	139145			1	
FVATMYHYLQFAYYK	1	Unmodified	1943.928	0.92802762	561;3885	O75718;Q92791	CRTAP;LEPREL4	Cartilage-associated protein;Synaptonemal complex protein SC65	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.45			5						17	5	5	7	5	85.247	78.809	2;3	5.293E-144	42772	160513_QHF_FH_JSI10Kac_6	304.34	283.39			0.54583	0.46697	158.86	21	21	Median	0.54583	0.46697	182.75	5	5	Median	2.2221	2.6404	211.01	5	5	Median	0.95955	0.92278	116.7	7	7	Median	0.036493	0.039143	171.75	4	4	Linear	11837000000	6605300000	5232100000	3428600000	1561500000	1867100000	4422200000	2837400000	1584800000	3133200000	1606800000	1526400000	853510000	599680000	253820000	17006	561;3885	16122	103110;103111;103112;103113;103114;103115;103116;103117;103118;103119;103120;103121;103122;103123;103124;103125;103126;103127;103128;103129;103130;103131	139146;139147;139148;139149;139150;139151;139152;139153;139154;139155;139156;139157;139158;139159;139160;139161;139162;139163;139164;139165;139166;139167;139168	139165			23	
FVATMYHYLQFAYYK	1	Oxidation (M)	1959.9229	0.92294224	561;3885	O75718;Q92791	CRTAP;LEPREL4	Cartilage-associated protein;Synaptonemal complex protein SC65	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	2	3	4	78.082	69.41	2;3	5.8105E-120	38646	160513_QHF_FH_JSI10Kac_6	259.55	236.43			1.0512	1.0112	24.263	12	0	Median	1.1413	0.9678	14.993	3	0	Median	0.77003	0.90878	6.9453	2	0	Median	1.0582	1.0063	43.515	3	0	Median	1.0439	1.108	4.5877	4	0	Median	3056100000	1415000000	1641100000	1460200000	625290000	834960000	528960000	326680000	202270000	273410000	125830000	147580000	793480000	337150000	456330000	17007	561;3885	16122	103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143	139169;139170;139171;139172;139173;139174;139175;139176;139177;139178;139179;139180;139181;139182;139183	139182		211	15	
FVAWMNGLSVYQIK	1	Unmodified	1654.8541	0.85413439	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.69		3	3						8	3	4	4	3	92.133	87.592	2;3	9.658E-57	44317	160513_QHF_FH_JSI11Kac_6	237.36	218.61			1.1442	0.98989	55.343	13	11	Median	1.3409	1.1337	37.161	3	1	Median	0.94433	1.114	49.905	4	4	Median	1.2004	1.1407	79.432	4	4	Median	0.59771	0.65013	40.424	2	2	Median	3020200000	1545500000	1474700000	601630000	295260000	306370000	1084600000	584140000	500450000	974620000	468490000	506130000	359330000	197630000	161700000	17008	2517	16123	103144;103145;103146;103147;103148;103149;103150;103151;103152;103153;103154;103155;103156;103157	139184;139185;139186;139187;139188;139189;139190;139191;139192;139193;139194;139195;139196;139197;139198;139199;139200;139201;139202;139203	139187			20	
FVAWMNGLSVYQIK	1	Oxidation (M)	1670.849	0.84904901	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	82.723	74.265	2	1.0149E-30	40260	160513_QHF_FH_JSI9Kac_6	171.92	138.7			1.1168	1.0529	13.29	5	2	Median	1.2215	1.0529	NaN	1	0	Median	0.85946	0.99397	NaN	1	0	Median	1.0368	0.99773	12.315	2	2	Median	1.2282	1.3075	NaN	1	0	Median	215980000	99102000	116880000	45088000	21452000	23636000	56087000	29391000	26696000	60117000	26098000	34019000	54687000	22160000	32527000	17009	2517	16123	103158;103159;103160;103161;103162	139204;139205;139206;139207;139208;139209;139210;139211	139206		1988	8	
FVCIYHVR	0	Unmodified	1092.5539	0.55387005	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	45.218	36.134	3	0.00086562	19965	160513_QHF_FH_JSI10Kac_6	68.787	64.096			1.7865	2.0082	23.456	2	0	Median	NaN	NaN	NaN	0	0	Median	2.056	2.3705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5524	1.7013	NaN	1	0	Median	70865000	35625000	35240000	0	0	0	57763000	29882000	27881000	0	0	0	13102000	5743400	7358600	17010	2647	16124	103163;103164	139212;139213	139213			2	
FVCSPDEVMDTIDEGK	1	Unmodified	1840.7859	0.78591599	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	74.646	74.091	2	0.014631	67598	160511_QHF_FH_JSI12i_1	50.149	36.949			1.2053	1.1965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.1965	NaN	1	1	Median	15817000	5358300	10458000	0	0	0	0	0	0	0	0	0	15817000	5358300	10458000	17011	1400	16125	103165	139214	139214			1	
FVDFQKVR	1	Acetyl (K)	1079.5764	0.57637963	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		58.922	49.203	2	0.06023	26640	160513_QHF_FH_JSI11Kac_6	51.662	38.674			0.21251	0.20496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21251	0.20496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9239300	7720000	1519400	0	0	0	0	0	0	9239300	7720000	1519400	0	0	0	17012	2545	16126	103166	139215	139215			1	
FVDGEWYR	0	Unmodified	1070.4821	0.48214489	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	46.437	45.458	2	0.0007734	39393	160511_QHF_FH_JSI11i_2	98.418	88.004			0.80203	0.80952	18.624	4	1	Median	0.81673	0.7076	NaN	1	0	Median	0.88067	1.098	NaN	1	0	Median	0.7876	0.79972	NaN	1	0	Median	0.7282	0.81943	NaN	1	1	Median	1376200000	648710000	727480000	269190000	149820000	119370000	320650000	136880000	183770000	446760000	226900000	219860000	339580000	135110000	204470000	17013	3213	16127	103167;103168;103169;103170	139216;139217;139218;139219;139220;139221;139222;139223	139222			8	
FVDGLMIHSGDPVNYYVDTAVR	0	Unmodified	2467.1842	0.18419532	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.87	3	10	4						5	5	5	6	6	86.695	84.224	2;3;4	6.3519E-74	40998	160513_QHF_FH_JSI11Kac_6	210.74	199.12			0.96564	1.0336	39.47	21	9	Median	1.1659	0.95244	56.379	5	2	Median	0.89754	1.0757	17.157	5	2	Median	1.021	1.0336	29.63	5	1	Median	0.95067	1.0198	49.887	6	4	Median	8298900000	3810000000	4488900000	1722700000	629180000	1093500000	2069400000	1002000000	1067400000	2642800000	1244100000	1398700000	1864000000	934640000	929320000	17014	1227	16128	103171;103172;103173;103174;103175;103176;103177;103178;103179;103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190;103191;103192	139224;139225;139226;139227;139228;139229;139230;139231;139232;139233;139234;139235;139236;139237;139238;139239;139240;139241;139242;139243;139244;139245;139246;139247;139248;139249;139250;139251;139252;139253;139254;139255;139256;139257;139258;139259;139260;139261;139262;139263;139264;139265	139236			42	
FVDGLMIHSGDPVNYYVDTAVR	0	Oxidation (M)	2483.1791	0.17910994	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		3										1	2	82.006	81.05	3	3.5023E-25	70064	160511_QHF_FH_JSI12i_2	187.57	172.96			1.035	1.1654	35.127	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96518	0.97602	NaN	1	1	Median	1.3242	1.4964	35.359	2	2	Median	844990000	389820000	455170000	0	0	0	0	0	0	267270000	164240000	103040000	577720000	225580000	352140000	17015	1227	16128	103193;103194;103195	139266;139267;139268	139267		861	3	
FVDGVSTVAR	0	Unmodified	1049.5506	0.55055881	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	4.97	3	5					2			2	3	3	2	34.3	31.727	2	0.00077176	27698	160511_QHF_FH_JSI9i_2	83.783	68.121			0.74858	0.87129	50.644	10	5	Median	0.8807	0.74845	81.574	2	2	Median	0.6643	0.77656	29.364	3	0	Median	1.1906	1.1715	23.511	3	1	Median	0.41643	0.45234	33.464	2	2	Median	1392500000	813150000	579350000	310870000	197440000	113430000	366830000	222460000	144370000	487180000	242380000	244800000	227610000	150860000	76750000	17016	679	16129	103196;103197;103198;103199;103200;103201;103202;103203;103204;103205	139269;139270;139271;139272;139273;139274;139275;139276;139277;139278;139279	139277			11	
FVDHVFDEQVIDSLTVK	1	Unmodified	1990.0048	0.004757612	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.72		11	2						2	2	4	5	4	88.72	86.913	2;3	5.0134E-17	79087	160511_QHF_FH_JSI10i_2	203.85	175.05			0.94913	0.96364	54.454	13	8	Median	1.0087	0.86362	15.579	2	1	Median	0.69545	0.85058	79.106	3	2	Median	1.2889	1.2925	66.038	4	3	Median	0.92445	1.0212	49.38	4	2	Median	1123700000	555590000	568150000	229780000	121090000	108690000	187320000	114060000	73258000	393350000	183790000	209560000	313300000	136660000	176640000	17017	816	16130	103206;103207;103208;103209;103210;103211;103212;103213;103214;103215;103216;103217;103218;103219;103220	139280;139281;139282;139283;139284;139285;139286;139287;139288;139289;139290;139291;139292;139293;139294;139295;139296;139297;139298;139299;139300;139301;139302;139303;139304;139305;139306;139307;139308;139309;139310;139311	139307			32	
FVDIFQQTPLGR	0	Unmodified	1419.751	0.75104953	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	84.328	83.56	2	0.0016102	73337	160511_QHF_FH_JSI11i_2	72.006	63.051			0.9873	0.95865	63.662	3	2	Median	NaN	NaN	NaN	0	0	Median	1.4767	1.8819	NaN	1	1	Median	0.9873	0.95865	NaN	1	0	Median	0.47981	0.52719	NaN	1	1	Median	51690000	28226000	23464000	0	0	0	12129000	6203100	5926400	17591000	9079500	8511700	21969000	12943000	9025600	17018	3009	16131	103221;103222;103223	139312;139313;139314;139315	139313			4	
FVDILGLR	0	Unmodified	931.5491	0.54910224	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	2	1		76.578	75.846	2	7.0443E-06	67508	160511_QHF_FH_JSI10i_2	148.07	92.627			1.5649	1.6758	93.16	5	5	Median	0.90759	0.77706	108.69	2	2	Median	0.71132	0.87862	111.11	2	2	Median	2.6629	2.5846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	438880000	227550000	211320000	122990000	66465000	56530000	164630000	109000000	55631000	151250000	52091000	99163000	0	0	0	17019	3817	16132	103224;103225;103226;103227;103228	139316;139317;139318;139319;139320	139320			5	
FVDILTNWYVR	0	Unmodified	1424.7452	0.74523587	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.9		7							5	3	4	3	2	94.113	90.773	2	1.621E-11	42921	160513_QHF_FH_JSI12Kac_6	143.39	127.76			1.512	1.504	76.372	12	11	Median	3.0635	2.5844	98.124	3	3	Plateau	0.8026	0.98358	102.27	4	4	Median	1.4666	1.3837	66.784	3	3	Median	1.0484	1.1217	53.27	2	1	Median	1535400000	776790000	758650000	251660000	88509000	163150000	680240000	414520000	265720000	398220000	186450000	211760000	205330000	87313000	118020000	17020	1520	16133	103229;103230;103231;103232;103233;103234;103235;103236;103237;103238;103239;103240	139321;139322;139323;139324;139325;139326;139327;139328;139329;139330;139331;139332;139333	139331			13	
FVDLYGAQK	1	Unmodified	1039.5338	0.53384611	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.57	5	7	3				3			4	5	6	3	43.09	40.534	2	5.3471E-08	34619	160511_QHF_FH_JSI12i_2	151.27	111.73			1.39	1.1476	83.094	18	16	Median	1.39	1.1476	41.294	4	2	Median	0.83073	0.93156	75.328	5	5	Median	0.98604	0.98958	112.35	6	6	Median	2.4456	2.7178	106.04	3	3	Median	2471400000	1118500000	1352900000	349040000	131300000	217740000	595760000	310220000	285540000	938660000	402410000	536240000	587920000	274580000	313330000	17021	1507	16134	103241;103242;103243;103244;103245;103246;103247;103248;103249;103250;103251;103252;103253;103254;103255;103256;103257;103258	139334;139335;139336;139337;139338;139339;139340;139341;139342;139343;139344;139345;139346;139347;139348;139349;139350;139351	139336			17	
FVDNMYK	1	Unmodified	915.41604	0.41603916	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	27.324	26.428	2	0.0057274	22135	160511_QHF_FH_JSI11i_2	115.46	93.757			3.3278	3.4103	10.647	3	3	Median	3.4391	2.9121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.294	3.4103	NaN	1	1	Median	3.3278	3.5663	NaN	1	1	Median	171820000	52984000	118840000	50837000	16258000	34578000	0	0	0	78803000	26248000	52555000	42179000	10477000	31702000	17022	3906	16135	103259;103260;103261	139352;139353;139354	139354			3	
FVDSGEMAESFPYR	0	Unmodified	1633.7083	0.70825802	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.446	63.143	2	0.0014118	54239	160511_QHF_FH_JSI12i_2	77.062	69.413			0.74736	0.78569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74736	0.78569	NaN	1	1	Median	13444000	9131300	4312800	0	0	0	0	0	0	0	0	0	13444000	9131300	4312800	17023	2285	16136	103262	139355	139355			1	
FVDSKSG	1	Acetyl (K)	780.36538	0.3653838	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				2	2						1	1	2	23.221	15.945	2	0.02313	7334	160513_QHF_FH_JSI12Kacf_1	74.717	74.717			0.93891	0.96211	9.5757	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.81377	0.97497	NaN	1	0	Median	0.8252	0.80601	NaN	1	0	Median	0.91508	0.97133	3.2276	2	0	Median	27603000	13284000	14319000	0	0	0	5002700	2934800	2067900	5958400	3233200	2725200	16642000	7115800	9525900	17024	517	16137	103263;103264;103265;103266	139356;139357;139358;139359	139357	266		4	
FVDSTFYLLLDLITFFDEYHSGHIDR	0	Unmodified	3162.5339	0.53385269	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.07	96.352	4	1.0099E-34	56912	160513_QHF_FH_JSI10Kac_6	154.71	138.31			0.86703	1.0396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86703	1.0396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	454530000	233440000	221090000	0	0	0	454530000	233440000	221090000	0	0	0	0	0	0	17025	3503	16138	103267	139360	139360			1	
FVEDTKK	2	Unmodified	865.45453	0.45453316	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.33		11						3		2	2	6	4	6.8581	4.5242	2;3	0.0069858	4454	160511_QHF_FH_JSI10i_2	52.786	35.4			0.85679	0.84776	138.32	14	14	Median	1.1238	0.97071	140.75	2	2	Median	0.63556	0.78969	204.84	2	2	Median	0.85679	0.84776	135.18	6	6	Median	1.041	1.1633	177.59	4	4	Median	2029800000	994440000	1035300000	248500000	99510000	148990000	287690000	165820000	121870000	977430000	451160000	526280000	516140000	277950000	238190000	17026	1092	16139	103268;103269;103270;103271;103272;103273;103274;103275;103276;103277;103278;103279;103280;103281	139361;139362;139363;139364;139365;139366;139367;139368;139369;139370;139371;139372;139373;139374	139374			14	
FVEECFQAGIISK	1	Unmodified	1526.7439	0.74391524	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65	64.453	2	0.00082086	56277	160511_QHF_FH_JSI11i_2	78.692	67.787			0.49943	0.52426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49943	0.52426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37623000	26353000	11271000	0	0	0	0	0	0	37623000	26353000	11271000	0	0	0	17027	2846	16140	103282	139375	139375			1	
FVEEQHTK	1	Unmodified	1016.4927	0.49270958	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	6.2538	5.8479	2;3	9.602E-05	3779	160511_QHF_FH_JSI9i_2	130.27	101.76			1.2133	1.0965	40.165	8	2	Median	1.2698	1.0965	0.96699	2	0	Median	0.74574	0.90833	8.17	2	0	Median	1.1432	1.1538	17.074	2	0	Median	1.7768	2.0022	63.26	2	2	Median	975450000	421140000	554310000	177080000	74583000	102500000	194440000	111370000	83067000	394510000	148950000	245570000	209420000	86242000	123180000	17028	3961	16141	103283;103284;103285;103286;103287;103288;103289;103290	139376;139377;139378;139379;139380;139381;139382;139383	139378			8	
FVEFFGPGVAQLSIADR	0	Unmodified	1851.9519	0.95193418	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							3	3	6	4	100.54	100.45	2;3	2.1658E-11	89396	160511_QHF_FH_JSI11i_3	82.259	71.792			0.72802	0.65825	75.425	11	10	Median	2.5249	2.1884	70.869	3	2	Median	0.46899	0.58228	66.332	3	3	Median	2.2804	2.2948	114.6	3	3	Median	0.57234	0.62782	4.1322	2	2	Median	460990000	224770000	236220000	110390000	48056000	62331000	82808000	50351000	32456000	116050000	46795000	69252000	151750000	79572000	72178000	17029	1194	16142	103291;103292;103293;103294;103295;103296;103297;103298;103299;103300;103301;103302;103303;103304;103305;103306	139384;139385;139386;139387;139388;139389;139390;139391;139392;139393;139394;139395;139396;139397;139398;139399	139386			16	
FVEGLIVTLSPR	0	Unmodified	1329.7656	0.76563696	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	83.473	82.605	2	0.0022674	71450	160511_QHF_FH_JSI12i_2	71.349	55.687			0.66815	0.79877	9.5194	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66941	0.85439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66689	0.74678	NaN	1	1	Median	29012000	20178000	8833900	0	0	0	13566000	9564800	4000700	0	0	0	15446000	10613000	4833200	17030	3888	16143	103307;103308;103309	139400;139401;139402	139400			3	
FVEGLPINDFSR	0	Unmodified	1392.7038	0.70376498	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.73	4	6	5				2	4		4	5	6	6	76.273	72.615	2	3.0485E-23	67133	160511_QHF_FH_JSI10i_1	180.67	163.24			1.0095	1.0392	23.573	20	6	Median	1.3528	1.1228	7.0643	4	0	Median	1.0127	1.1836	16.289	5	0	Median	0.95273	0.92384	35.673	6	4	Median	0.96504	1.0071	23.953	5	2	Median	15448000000	7176800000	8271000000	1967300000	770530000	1196700000	2885000000	1470900000	1414100000	6434100000	2955700000	3478300000	4161400000	1979700000	2181800000	17031	1503	16144	103310;103311;103312;103313;103314;103315;103316;103317;103318;103319;103320;103321;103322;103323;103324;103325;103326;103327;103328;103329;103330	139403;139404;139405;139406;139407;139408;139409;139410;139411;139412;139413;139414;139415;139416;139417;139418;139419;139420;139421;139422;139423;139424;139425;139426;139427;139428;139429;139430;139431;139432;139433;139434;139435;139436	139418			34	
FVEGLPINDFSREK	1	Unmodified	1649.8413	0.8413211	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.702	64.412	3	0.00023504	55636	160511_QHF_FH_JSI12i_3	56.599	43.973			0.4416	0.45223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4416	0.45223	NaN	1	0	Median	57453000	41558000	15895000	0	0	0	0	0	0	0	0	0	57453000	41558000	15895000	17032	1503	16145	103331	139437;139438	139438			2	
FVEKPQVFVSNK	2	Unmodified	1420.7715	0.77145062	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.041	39.845	3	0.053799	33956	160511_QHF_FH_JSI12i_3	30.905	23.181			0.64743	0.66187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64743	0.66187	NaN	1	1	Median	69432000	40873000	28559000	0	0	0	0	0	0	0	0	0	69432000	40873000	28559000	17033	5672	16146	103332	139439	139439			1	
FVEKYTELQK	2	Acetyl (K)	1325.6867	0.68671794	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							4				2	2		57.484	46.667	2	0.0053965	25758	160513_QHF_FH_JSI10Kac_4	75.294	55.507			0.59725	0.63835	119.45	2	2	Median	NaN	NaN	NaN	0	0	Median	0.23117	0.2743	NaN	1	1	Median	1.543	1.4856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14254000	10961000	3293300	0	0	0	5614900	3907700	1707200	8639300	7053300	1586100	0	0	0	17034	5591	16147	103333;103334;103335;103336	139440;139441;139442;139443	139440	3492		4	
FVELPGAEMGK	1	Unmodified	1176.5849	0.5848954	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.09	3.53	3	4	3				1			4	4	2	1	57.373	55.456	2	1.283E-10	47965	160511_QHF_FH_JSI11i_2	140.75	132.53			1.1371	1.1728	41.507	11	8	Median	2.6744	2.2759	51.686	4	4	Median	0.92712	1.1242	33.993	4	3	Median	1.4593	1.455	30.493	2	1	Median	1.0308	1.1463	NaN	1	0	Median	2994200000	1392400000	1601800000	579400000	210460000	368930000	803710000	377880000	425830000	1077200000	538750000	538470000	533870000	265270000	268590000	17035	878	16148	103337;103338;103339;103340;103341;103342;103343;103344;103345;103346;103347	139444;139445;139446;139447;139448;139449;139450;139451;139452;139453;139454;139455;139456	139455			13	
FVELPGAEMGK	1	Oxidation (M)	1192.5798	0.57981002	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0				By MS/MS	14	0							1						1	53.006	42.486	2	0.0030021	24321	160513_QHF_FH_JSI12Kac_4	62.823	57.664			0.93312	1.004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93312	1.004	NaN	1	0	Median	5491700	2775300	2716300	0	0	0	0	0	0	0	0	0	5491700	2775300	2716300	17036	878	16148	103348	139457;139458	139458		428	2	
FVELVHQQK	1	Unmodified	1126.6135	0.61349341	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	24.802	23.565	2	0.018999	19559	160511_QHF_FH_JSI12i_2	51.059	42.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9744100	0	9744100	0	0	0	0	0	0	0	0	0	9744100	0	9744100	17037	3675	16149	103349	139459	139459			1	
FVEQLGSYDPLPNSHGEK	1	Unmodified	2015.9589	0.95887005	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	59.373	58.532	3	2.1954E-07	51448	160511_QHF_FH_JSI9i_2	111.65	106.07			1.1011	1.1425	49.53	5	2	Median	1.3116	1.1425	NaN	1	0	Median	1.1011	1.3637	NaN	1	0	Median	1.0773	1.0938	97.209	2	2	Median	0.97644	1.0965	NaN	1	0	Median	867770000	443410000	424360000	133640000	65440000	68202000	166340000	89836000	76506000	407200000	206510000	200690000	160590000	81628000	78961000	17038	5586	16150	103350;103351;103352;103353;103354	139460;139461;139462;139463;139464;139465;139466;139467	139463			8	
FVEQLITFLSLEDRK	1	Unmodified	1836.9986	0.99855002	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.664	84.943	3	0.00064979	48341	160513_QHF_FH_JSI10Kac_6	74.141	56.038			0.23109	0.27897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23109	0.27897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64701000	62706000	1994800	0	0	0	64701000	62706000	1994800	0	0	0	0	0	0	17039	2588	16151	103355	139468	139468			1	
FVESILSNNTTDDHCQEFVNQK	1	Unmodified	2624.1813	0.18129478	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	59.756	58.851	3	1.1609E-19	51016	160511_QHF_FH_JSI11i_2	147.9	140.36			1.0124	1.0484	23.161	5	5	Median	NaN	NaN	NaN	0	0	Median	0.79792	0.95353	NaN	1	1	Median	1.1781	1.2101	20.292	2	2	Median	0.96324	1.0456	36.083	2	2	Median	142830000	66645000	76182000	0	0	0	18145000	12702000	5443100	80389000	36686000	43703000	44293000	17257000	27036000	17040	3290	16152	103356;103357;103358;103359;103360	139469;139470;139471;139472;139473;139474	139472			6	
FVESVDEYQFVER	0	Unmodified	1645.7624	0.76240208	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	2	1	4	64.417	63.662	2	2.4807E-10	58085	160511_QHF_FH_JSI12i_1	147.91	123.92			1.0884	1.0163	22.369	8	6	Median	0.80124	0.7235	25.065	3	3	Plateau	0.92589	1.0764	24.724	2	2	Median	1.0686	1.0555	NaN	1	0	Median	1.0938	1.1703	25.312	2	1	Median	537890000	259300000	278600000	139970000	66801000	73168000	190320000	87143000	103180000	101670000	45262000	56405000	105930000	60092000	45843000	17041	2399	16153	103361;103362;103363;103364;103365;103366;103367;103368;103369;103370	139475;139476;139477;139478;139479;139480;139481;139482;139483;139484;139485	139479			11	
FVETPGQK	1	Unmodified	904.46543	0.46543219	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			2	2	2	3	15.833	14.411	2	0.00024028	11923	160511_QHF_FH_JSI9i_2	117.17	54.327			1.3945	1.3182	23.29	9	3	Median	1.5389	1.2919	2.8507	2	0	Median	1.2117	1.4547	24.199	2	1	Median	1.5273	1.5151	3.2991	2	0	Median	1.1788	1.2413	35.259	3	2	Median	1328200000	626670000	701510000	287570000	135160000	152410000	397940000	200190000	197750000	118450000	55829000	62616000	524220000	235490000	288730000	17042	840	16154	103371;103372;103373;103374;103375;103376;103377;103378;103379	139486;139487;139488;139489;139490;139491;139492	139489			7	
FVETPGQKYK	2	Acetyl (K)	1237.6343	0.63428844	840	P05455	SSB	Lupus La protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.454	31.41	2	0.010923	18998	160513_QHF_FH_JSI11Kac_4	59.35	28.121			0.33428	0.32776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33428	0.32776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13487000	10329000	3158000	0	0	0	0	0	0	13487000	10329000	3158000	0	0	0	17043	840	16155	103380	139493;139494	139494	490		2	
FVFAAVK	1	Unmodified	780.45341	0.45341094	1330;1697	P29992;O95837;P50148	GNA11;GNA14;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0				By MS/MS	2	0		1											1	51.895	50.503	2	0.045762	43169	160511_QHF_FH_JSI12i_2	44.531	26.764			0.94092	1.0098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94092	1.0098	NaN	1	0	Median	81975000	45836000	36139000	0	0	0	0	0	0	0	0	0	81975000	45836000	36139000	17044	1330;1697	16156	103381	139495	139495			1	
FVFDIFQFAK	1	Unmodified	1260.6543	0.6542956	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	100.23	97.365	2	6.6728E-19	87937	160511_QHF_FH_JSI12i_2	174.16	149.24			0.99472	0.96007	34.06	12	4	Median	1.1638	0.97758	2.3258	3	0	Median	0.78324	0.90712	13.619	3	0	Median	0.99756	1.0162	22.251	3	3	Median	0.69599	0.73729	68.436	3	1	Median	1833000000	966420000	866610000	306590000	136740000	169850000	394410000	228620000	165790000	573250000	298440000	274810000	558780000	302620000	256160000	17045	2728	16157	103382;103383;103384;103385;103386;103387;103388;103389;103390;103391;103392;103393	139496;139497;139498;139499;139500;139501;139502;139503;139504;139505;139506;139507;139508;139509;139510	139497			15	
FVFFNIPQIQYK	1	Unmodified	1542.8235	0.82348619	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	2	3	97.382	93.625	2	1.2736E-39	46828	160513_QHF_FH_JSI11Kac_6	197.3	175.21			1.0609	0.97514	62.662	9	0	Median	1.0587	0.86677	8.8769	2	0	Median	1.0523	1.2272	32.52	2	0	Median	0.87927	0.83652	25.539	2	0	Median	1.2228	1.2119	101.96	3	0	Median	1832700000	848220000	984510000	329620000	146850000	182770000	479770000	231760000	248010000	532420000	252060000	280360000	490910000	217540000	273360000	17046	2105	16158	103394;103395;103396;103397;103398;103399;103400;103401;103402	139511;139512;139513;139514;139515;139516;139517;139518;139519;139520	139513			10	
FVFGQNMSER	0	Unmodified	1213.555	0.55499226	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	47.539	46.633	2	6.9071E-06	38265	160511_QHF_FH_JSI9i_3	107.57	104.57			0.9372	0.92509	13.35	6	0	Median	1.2853	1.0737	22.263	2	0	Median	0.76356	0.91232	8.007	2	0	Median	0.96582	0.91422	NaN	1	0	Median	0.90943	0.93292	NaN	1	0	Median	675890000	353600000	322280000	258550000	114440000	144110000	257970000	165390000	92583000	108980000	50712000	58270000	50382000	23066000	27316000	17047	4759	16159	103403;103404;103405;103406;103407;103408	139521;139522;139523;139524;139525;139526;139527;139528	139525			8	
FVFGQNMSER	0	Oxidation (M)	1229.5499	0.54990688	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			34.639	33.207	2	0.033449	27657	160511_QHF_FH_JSI10i_3	41.448	34.553			1.0567	1.0025	13.235	2	0	Median	1.36	1.1009	NaN	1	0	Median	0.82095	0.91297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50441000	21729000	28712000	29566000	11885000	17681000	20875000	9844100	11031000	0	0	0	0	0	0	17048	4759	16159	103409;103410	139529	139529			1	
FVFGSESVK	1	Unmodified	998.5073	0.50729701	1685;31	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	46.677	45.72	2	0.0004804	39151	160511_QHF_FH_JSI12i_2	79.906	54.17			0.78912	0.84083	66.438	4	2	Median	NaN	NaN	NaN	0	0	Median	0.49668	0.60597	108.8	2	2	Median	0.72514	0.73921	NaN	1	0	Median	0.85873	0.95642	NaN	1	0	Median	518650000	305170000	213470000	0	0	0	199590000	131510000	68087000	189630000	103450000	86186000	129420000	70221000	59199000	17049	1685;31	16160	103411;103412;103413;103414	139530;139531;139532;139533;139534	139530			5	
FVFLLDR	0	Unmodified	908.51199	0.51198846	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.64		2	5						8	4	2	5	4	79.381	74.758	2	0.0045627	40466	160513_QHF_FH_JSI10Kac_6	105.2	59.185			1.091	0.95951	122.29	15	15	Median	1.7901	1.5482	123.44	4	4	Median	0.9535	1.1343	114.43	2	2	Median	0.67586	0.67032	120.45	5	5	Median	1.0078	1.0419	174.56	4	4	Median	673570000	311420000	362150000	97790000	43142000	54648000	161300000	77883000	83419000	244680000	119770000	124910000	169790000	70625000	99165000	17050	2344	16161	103415;103416;103417;103418;103419;103420;103421;103422;103423;103424;103425;103426;103427;103428;103429	139535;139536;139537;139538;139539;139540;139541;139542;139543;139544;139545;139546;139547;139548;139549	139548			15	
FVFMLSTR	0	Unmodified	999.52117	0.52117293	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	3	1	2	2	76.056	70.157	2	0.00023078	36240	160513_QHF_FH_JSI12Kac_6	117.93	65.666			0.97385	0.98252	34.151	6	2	Median	0.84999	0.70348	27.592	2	1	Median	0.94385	1.129	NaN	1	0	Median	1.2596	1.1856	NaN	1	0	Median	0.90598	0.95482	50.399	2	1	Median	998940000	546680000	452260000	170410000	97997000	72408000	539670000	315960000	223700000	149830000	63830000	85999000	139040000	68895000	70149000	17051	403	16162	103430;103431;103432;103433;103434;103435;103436;103437	139550;139551;139552;139553;139554;139555;139556;139557;139558;139559	139557			10	
FVFMLSTR	0	Oxidation (M)	1015.5161	0.51608756	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	71.58	62.762	2	0.012429	32819	160513_QHF_FH_JSI12Kac_6	68.214	45.172			1.1202	1.0756	10.245	4	1	Median	1.2472	1.0644	NaN	1	0	Median	0.83837	1.0075	NaN	1	0	Median	1.2989	1.2785	NaN	1	0	Median	1.0062	1.0868	NaN	1	1	Median	186030000	92419000	93612000	30825000	12949000	17877000	63898000	35561000	28337000	33280000	14801000	18479000	58028000	29108000	28920000	17052	403	16162	103438;103439;103440;103441;103442	139560;139561;139562	139562		163	3	
FVFSLVDAMNGK	1	Unmodified	1326.6642	0.66420836	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.17	1	4	5						4	3	4	4	3	90.606	87.844	2	2.6453E-93	81188	160511_QHF_FH_JSI10i_2	261.98	210.13			1.1769	1.1759	49.47	14	2	Median	1.3134	1.0784	13.794	3	0	Median	1.0747	1.2854	87.748	4	1	Median	1.0631	1.0107	15.818	4	1	Median	1.2757	1.339	9.4128	3	0	Median	4593200000	2359300000	2233900000	863710000	425560000	438150000	1014900000	533550000	481380000	1574100000	820480000	753600000	1140400000	579700000	560730000	17053	1504	16163	103443;103444;103445;103446;103447;103448;103449;103450;103451;103452;103453;103454;103455;103456	139563;139564;139565;139566;139567;139568;139569;139570;139571;139572;139573;139574;139575;139576;139577;139578;139579;139580;139581;139582;139583;139584;139585;139586;139587;139588;139589;139590;139591;139592;139593;139594;139595;139596;139597;139598;139599;139600;139601;139602;139603;139604	139594			42	
FVFSLVDAMNGK	1	Oxidation (M)	1342.6591	0.65912298	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	4.92			1					3	1	1	1	1	2	79.017	70.87	2	7.6083E-09	36961	160513_QHF_FH_JSI12Kac_6	117.67	106.92			1.0108	1.0619	11.48	5	1	Median	1.1399	0.95928	NaN	1	0	Median	1.0108	1.1663	NaN	1	0	Median	0.92057	0.8742	NaN	1	1	Median	1.0172	1.0812	2.5501	2	0	Median	78228000	46137000	32092000	4589500	1952100	2637400	3186500	1552600	1633900	37091000	21265000	15827000	33361000	21367000	11994000	17054	1504	16163	103457;103458;103459;103460;103461	139605;139606;139607;139608;139609	139609		1182	5	
FVGDPALVLNDIHK	1	Unmodified	1536.83	0.83002813	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	74.778	73.919	3	3.4698E-13	64862	160511_QHF_FH_JSI11i_2	117.03	107.5			1.0267	0.9999	36.699	4	1	Median	1.0096	0.87571	NaN	1	0	Median	0.69645	0.85273	NaN	1	0	Median	1.8646	1.8811	NaN	1	1	Median	1.0441	1.1417	NaN	1	0	Median	306100000	151240000	154870000	48897000	25061000	23835000	62174000	39500000	22674000	133260000	54504000	78761000	61768000	32172000	29596000	17055	2491	16164	103462;103463;103464;103465;103466	139610;139611;139612;139613	139612			4	
FVGDPALVLNDIHKK	2	Acetyl (K)	1706.9356	0.93555583	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.578	70.264	3	0.00039456	38516	160513_QHF_FH_JSI11Kac_6	86.378	74.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9318300	9318300	0	0	0	0	0	0	0	9318300	9318300	0	0	0	0	17056	2491	16165	103467	139614	139614	2500		1	
FVGDPALVLNDIHKK	2	Unmodified	1664.925	0.92499115	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.979	63.694	4	0.0028958	54969	160511_QHF_FH_JSI12i_3	52.527	36.587			4.7087	4.9855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.7087	4.9855	NaN	1	1	Median	70450000	14294000	56156000	0	0	0	0	0	0	0	0	0	70450000	14294000	56156000	17057	2491	16165	103468	139615	139615			1	
FVGFIVVSCPLK	1	Unmodified	1364.7526	0.75262943	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									4	1		3		85.389	76.306	2;3	8.3761E-10	42284	160513_QHF_FH_JSI11Kac_6	152.81	127.96			1.7903	1.6162	43.67	3	2	Plateau	1.3862	1.191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3043	1.2583	61.595	2	2	Median	NaN	NaN	NaN	0	0	Median	221340000	93799000	127540000	51753000	20735000	31018000	0	0	0	169580000	73064000	96519000	0	0	0	17058	4868	16166	103469;103470;103471;103472	139616;139617;139618;139619	139616			4	
FVGGGVTSAGLVQEEIR	0	Unmodified	1717.8999	0.89989861	3352	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	65.999	65	2	0.00055175	55907	160511_QHF_FH_JSI12i_2	99.215	75.979			0.98388	1.0283	12.079	4	4	Median	NaN	NaN	NaN	0	0	Median	0.74304	0.91859	NaN	1	1	Median	1.0355	1.0461	NaN	1	1	Median	1.0076	1.1141	13.761	2	2	Median	68846000	43415000	25431000	0	0	0	21555000	13073000	8482500	23743000	16601000	7141700	23548000	13741000	9807200	17059	3352	16167	103473;103474;103475;103476	139620;139621;139622;139623	139621			4	
FVGGVYGGNIK	1	Unmodified	1109.5869	0.58694431	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.872	39.957	2	0.0045615	34115	160511_QHF_FH_JSI12i_2	64.265	56.033			2.1455	2.2491	23.572	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6356	2.657	NaN	1	1	Median	1.7466	1.9038	NaN	1	1	Median	107690000	52648000	55042000	0	0	0	0	0	0	69511000	33599000	35913000	38179000	19049000	19129000	17060	3582	16168	103477;103478	139624;139625	139624			2	
FVGIKDEDQLEAFLK	2	Unmodified	1750.9142	0.91415169	4313	Q99757	TXN2	Thioredoxin, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	2	3	85.532	85.109	2;3	1.3954E-05	73742	160511_QHF_FH_JSI12i_3	131.13	106.28			0.78591	0.80683	40.565	6	3	Median	NaN	NaN	NaN	0	0	Median	0.49745	0.61803	NaN	1	1	Median	1.1585	1.1317	71.091	2	1	Median	0.90487	0.92496	18.268	3	1	Median	344950000	161390000	183560000	0	0	0	60442000	40365000	20077000	116930000	56641000	60293000	167580000	64390000	103190000	17061	4313	16169	103479;103480;103481;103482;103483;103484;103485	139626;139627;139628;139629;139630;139631;139632;139633	139633			8	
FVGPGGYNLK	1	Unmodified	1050.5498	0.54983053	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	44.396	43.513	2	0.00012524	37069	160511_QHF_FH_JSI12i_2	98.299	82.86			0.67867	0.68171	33.98	8	6	Median	0.73042	0.64275	NaN	1	1	Median	0.76517	0.89502	42.704	2	2	Median	0.71467	0.69614	38.748	2	1	Median	0.92034	0.98913	41.811	3	2	Plateau	950140000	572210000	377920000	128830000	78845000	49988000	183620000	117110000	66516000	365480000	219240000	146240000	272200000	157020000	115180000	17062	3709	16170	103486;103487;103488;103489;103490;103491;103492;103493	139634;139635;139636;139637;139638;139639;139640	139635			6	
FVGQSGQEDK	1	Unmodified	1093.504	0.50400254	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	8.8832	8.199	2	0.0083524	5812	160511_QHF_FH_JSI9i_1	60.019	48.95			3.9594	3.2372	NaN	1	1	Median	3.9594	3.2372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21948000	4212800	17735000	21948000	4212800	17735000	0	0	0	0	0	0	0	0	0	17063	3720	16171	103494;103495	139641;139642	139642			2	
FVGTDPASDEVVLMK	1	Unmodified	1606.7913	0.79125936	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				68.758	67.782	2	1.5696E-06	60221	160511_QHF_FH_JSI9i_1	127.56	114.21			1.1318	0.94228	NaN	1	1	Median	1.1318	0.94228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116850000	57238000	59608000	116850000	57238000	59608000	0	0	0	0	0	0	0	0	0	17064	3838	16172	103496	139643	139643			1	
FVHDNYVIR	0	Unmodified	1161.5931	0.59309232	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.73		9	1						6	2	2	7	5	33.329	29.424	2;3	6.189E-06	16333	160513_QHF_FH_JSI10Kac_6	111.61	84.303			0.85853	0.94721	102.86	16	9	Median	1.8388	1.5665	51.45	2	1	Median	0.46561	0.55237	75.102	2	1	Median	0.85199	0.83287	144.55	7	5	Median	0.86512	0.95504	48.396	5	2	Median	3264600000	1774100000	1490600000	166400000	56325000	110070000	177060000	112290000	64763000	2155100000	1212800000	942300000	766090000	392670000	373420000	17065	1372	16173	103497;103498;103499;103500;103501;103502;103503;103504;103505;103506;103507;103508;103509;103510;103511;103512	139644;139645;139646;139647;139648;139649;139650;139651;139652;139653;139654;139655;139656;139657;139658	139658			15	
FVHFIDAPSLALIMPIVQR	0	Unmodified	2166.2024	0.20235198	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	98.774	94.368	3;4	6.5577E-35	49450	160513_QHF_FH_JSI9Kac_6	173.03	155.45			0.92176	0.95901	35.07	9	1	Median	1.9242	1.6502	63.596	2	1	Median	0.83321	0.97744	9.967	3	0	Plateau	0.94755	0.89529	3.9827	2	0	Median	0.82889	0.84245	1.6335	2	0	Median	4026100000	1985700000	2040400000	801570000	381690000	419880000	1216600000	614310000	602260000	1165200000	601430000	563800000	842760000	388300000	454460000	17066	3860	16174	103513;103514;103515;103516;103517;103518;103519;103520;103521	139659;139660;139661;139662;139663;139664;139665;139666;139667;139668;139669;139670;139671	139664			13	
FVHFIDAPSLALIMPIVQR	0	Oxidation (M)	2182.1973	0.1972666	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	91.715	83.164	3	2.0722E-25	46443	160513_QHF_FH_JSI11Kac_6	150.59	128.21			1.5397	1.295	32.696	5	2	Median	1.5397	1.295	NaN	1	0	Median	1.5935	1.8973	NaN	1	0	Median	1.208	1.1324	NaN	1	0	Median	1.1117	1.1787	49.673	2	2	Median	705770000	281580000	424190000	168520000	71881000	96638000	157910000	56412000	101500000	176850000	52011000	124840000	202500000	101280000	101220000	17067	3860	16174	103522;103523;103524;103525;103526	139672;139673;139674;139675;139676;139677;139678	139672		2310	7	
FVHGEGLR	0	Unmodified	913.477	0.47699993	1358	P30536	TSPO	Translocator protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		10	14							5	6	7	6	13.061	12.637	2;3	0.00052542	9414	160511_QHF_FH_JSI12i_3	81.548	44.527			0.50663	0.58286	160.13	23	21	Median	0.591	0.50628	177.77	5	5	Median	0.50221	0.5983	151.3	6	6	Median	0.4664	0.45812	150.83	6	6	Median	0.59509	0.68459	203.7	6	4	Median	6442600000	2570900000	3871600000	584860000	253410000	331450000	1131500000	536380000	595100000	2512300000	943520000	1568800000	2213900000	837620000	1376300000	17068	1358	16175	103527;103528;103529;103530;103531;103532;103533;103534;103535;103536;103537;103538;103539;103540;103541;103542;103543;103544;103545;103546;103547;103548;103549;103550	139679;139680;139681;139682;139683;139684;139685;139686;139687;139688;139689;139690;139691;139692;139693;139694;139695;139696;139697;139698;139699;139700;139701;139702;139703;139704;139705	139703			27	
FVHLLDQSDQDFQEELDLMK	1	Unmodified	2449.1471	0.14714111	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.464		11	5							3	3	6	4	99.896	99.822	3	2.4611E-14	88363	160511_QHF_FH_JSI11i_3	135.09	121.5			0.87759	0.80827	45.668	15	13	Median	0.87759	0.73751	52.89	3	3	Median	0.57896	0.70261	46.345	3	3	Median	0.88363	0.8633	53.199	6	5	Median	0.98169	1.1061	40.239	3	2	Median	799090000	381680000	417410000	97395000	47639000	49756000	158680000	93261000	65417000	333360000	144860000	188490000	209660000	95916000	113750000	17069	1600	16176	103551;103552;103553;103554;103555;103556;103557;103558;103559;103560;103561;103562;103563;103564;103565;103566	139706;139707;139708;139709;139710;139711;139712;139713;139714;139715;139716;139717;139718;139719;139720;139721;139722;139723;139724;139725;139726;139727;139728;139729;139730;139731	139707			26	
FVHLLDQSDQDFQEELDLMK	1	Oxidation (M)	2465.1421	0.14205573	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	85.85	85.698	3	3.9452E-05	74414	160511_QHF_FH_JSI12i_3	66.12	50.354			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17070	1600	16176	103567	139732	139732		1272	1	
FVHSENQHLVSPEALDFLDK	1	Unmodified	2324.1437	0.14371071	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.75	0.433		2	6							1	1	4	2	77.295	77.015	3;4	2.0023E-11	66168	160511_QHF_FH_JSI12i_3	127.01	115.05			1.0862	1.0289	13.855	7	2	Median	1.2534	1.0881	NaN	1	0	Median	1.0862	1.3168	NaN	1	0	Median	1.1222	1.0289	2.7187	3	1	Median	0.88798	0.89905	11.65	2	1	Median	617400000	288520000	328880000	24463000	11269000	13194000	23077000	14109000	8967900	298030000	136080000	161950000	271830000	127060000	144770000	17071	2076	16177	103568;103569;103570;103571;103572;103573;103574;103575	139733;139734;139735;139736;139737;139738;139739;139740;139741;139742	139742			9	
FVIATSTK	1	Unmodified	865.49092	0.49091866	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.52	4	4	4				3	4	3	5	5	7	5	37.55	32.198	2	0.00035515	27440	160511_QHF_FH_JSI12i_2	111.01	77.269			0.99281	1.0281	14.452	20	0	Median	1.157	0.9995	18.965	5	0	Median	0.92444	1.0687	8.4607	5	0	Median	0.98106	1.0088	19.133	5	0	Median	1.0106	1.0488	9.0035	5	0	Median	15612000000	7721800000	7889900000	3180800000	1334300000	1846500000	4267400000	2158600000	2108900000	5321800000	2731200000	2590600000	2841700000	1497800000	1343900000	17072	2196	16178	103576;103577;103578;103579;103580;103581;103582;103583;103584;103585;103586;103587;103588;103589;103590;103591;103592;103593;103594;103595;103596;103597	139743;139744;139745;139746;139747;139748;139749;139750;139751;139752;139753;139754;139755;139756;139757;139758;139759;139760;139761;139762;139763;139764;139765;139766;139767;139768;139769;139770;139771;139772;139773	139747			31	
FVIEENLHCIIK	1	Unmodified	1513.7963	0.79628516	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		71.529	70.777	3	0.00026145	62086	160511_QHF_FH_JSI11i_2	76.326	55.945			0.81993	0.81357	61.956	3	3	Plateau	0.31036	0.26197	NaN	1	1	Median	0.60472	0.71264	NaN	1	1	Median	0.81993	0.81357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55525000	30501000	25024000	8864800	6799800	2065000	16790000	9682000	7108300	29870000	14020000	15850000	0	0	0	17073	2284	16179	103598;103599;103600	139774;139775;139776	139775			3	
FVIFPIEYHDIWQMYK	1	Unmodified	2128.0492	0.049205384	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.173	86.779	3	1.6198E-104	51025	160513_QHF_FH_JSI10Kac_6	254.84	245.56			0.87218	0.93533	48.284	4	0	Median	1.5809	1.3501	NaN	1	0	Median	1.0952	1.3146	NaN	1	0	Median	0.69455	0.66546	NaN	1	0	Median	0.49	0.51983	NaN	1	0	Median	1518700000	819380000	699340000	391690000	136160000	255530000	494900000	263070000	231840000	292840000	195680000	97156000	339290000	224470000	114820000	17074	1373	16180	103601;103602;103603;103604	139777;139778;139779;139780;139781;139782;139783;139784	139783			8	
FVIFPIEYHDIWQMYK	1	Oxidation (M)	2144.0441	0.044120006	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	92.183	84.376	3	6.6018E-24	45077	160513_QHF_FH_JSI12Kac_6	148.57	122.71			0.65048	0.59578	31.66	5	4	Median	0.65048	0.55996	NaN	1	1	Median	0.67214	0.79156	40.183	2	2	Median	0.4599	0.45181	NaN	1	1	Median	0.66505	0.70885	NaN	1	0	Median	321660000	189320000	132340000	49590000	27988000	21603000	94549000	46104000	48446000	43358000	32240000	11119000	134170000	82992000	51174000	17075	1373	16180	103605;103606;103607;103608;103609	139785;139786;139787;139788;139789	139787		1015	5	
FVIGGPQGDAGLTGR	0	Unmodified	1443.747	0.74702678	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.03		4	5				1	5		4	4	3	4	61.593	56.925	2	1.3633E-14	48936	160511_QHF_FH_JSI12i_2	158.31	147.78			1.0087	0.91891	28.165	13	3	Median	1.0811	0.91891	30.256	3	1	Median	0.72979	0.88835	40.077	4	1	Median	0.84974	0.84657	17.821	3	1	Median	1.1313	1.2077	13.083	3	0	Median	2155700000	1080800000	1074900000	476600000	212030000	264580000	416680000	242970000	173710000	668550000	317120000	351430000	593850000	308640000	285210000	17076	1370	16181	103610;103611;103612;103613;103614;103615;103616;103617;103618;103619;103620;103621;103622;103623;103624	139790;139791;139792;139793;139794;139795;139796;139797;139798;139799;139800;139801;139802;139803;139804;139805;139806;139807;139808;139809;139810;139811;139812	139792			23	
FVIGGPQGDAGLTGRK	1	Unmodified	1571.842	0.8419898	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							5	4	2	1	48.276	47.236	2;3	3.8017E-07	41562	160511_QHF_FH_JSI11i_3	131.69	117.48			1.1094	1.0243	35.521	10	4	Median	1.1347	0.90269	46.258	5	3	Median	0.87275	0.99895	36.869	3	1	Median	1.1294	1.0812	4.0906	2	0	Median	NaN	NaN	NaN	0	0	Median	3746900000	1946100000	1800900000	1272000000	592020000	679940000	1235300000	702800000	532510000	1239700000	651240000	588410000	0	0	0	17077	1370	16182	103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636	139813;139814;139815;139816;139817;139818;139819;139820;139821;139822;139823;139824;139825;139826;139827;139828;139829;139830;139831;139832	139815			20	
FVIHASLPK	1	Unmodified	1010.5913	0.59130141	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.569	47.967	3	0.0020732	40845	160511_QHF_FH_JSI12i_3	46.462	34.869			1.3931	1.4436	14.969	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0905	1.272	NaN	1	0	Median	1.8661	1.714	NaN	1	1	Median	1.3931	1.4436	NaN	1	0	Median	85715000	37259000	48456000	0	0	0	14840000	7006300	7833800	31880000	14555000	17325000	38995000	15697000	23297000	17078	1817	16183	103637;103638;103639;103640	139833;139834;139835;139836;139837	139837			5	
FVIHHSMSK	1	Unmodified	1084.5488	0.54878467	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			12						4	5	6	2	3	19.162	16.612	2;3	1.3776E-06	13030	160511_QHF_FH_JSI9i_3	101.65	92.783			0.84184	0.87467	84.17	12	4	Median	1.0851	0.91452	47.365	4	1	Median	0.74247	0.83172	52.339	5	2	Median	9.3831	8.5455	NaN	1	1	Median	0.75852	0.8021	57.446	2	0	Median	854860000	446430000	408430000	449490000	220390000	229110000	249460000	138190000	111280000	32674000	3327100	29347000	123230000	84529000	38701000	17079	1579	16184	103641;103642;103643;103644;103645;103646;103647;103648;103649;103650;103651;103652;103653;103654;103655;103656	139838;139839;139840;139841;139842;139843;139844;139845;139846;139847;139848;139849;139850;139851;139852;139853;139854;139855;139856;139857	139848			20	
FVIHHSMSK	1	Oxidation (M)	1100.5437	0.54369929	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	8.5745	8.6721	2	0.0059952	6105	160511_QHF_FH_JSI12i_3	57.96	44.693			1.111	1.1169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.111	1.1169	NaN	1	0	Median	56826000	31622000	25204000	0	0	0	0	0	0	0	0	0	56826000	31622000	25204000	17080	1579	16184	103657	139858	139858		1239	1	
FVIHPESNNLIIIETDHNAYTEATK	1	Unmodified	2868.4294	0.42938762	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		5	4						2	2	2	3	4	76.91	75.11	3;4	1.8291E-42	65823	160511_QHF_FH_JSI12i_3	185.45	173.6			0.89721	0.97342	34.714	11	1	Median	1.579	1.337	80.652	2	1	Median	0.76993	0.93043	13.957	2	0	Median	1.0834	1.0337	21.209	3	0	Median	1.164	1.1732	23.989	4	0	Linear	1896000000	861830000	1034200000	119830000	48180000	71649000	208180000	111330000	96847000	563130000	262220000	300910000	1004900000	440100000	564770000	17081	2665	16185	103658;103659;103660;103661;103662;103663;103664;103665;103666;103667;103668	139859;139860;139861;139862;139863;139864;139865;139866;139867;139868;139869;139870;139871;139872;139873;139874;139875;139876;139877;139878;139879;139880;139881;139882;139883;139884;139885	139882			26	
FVIKPIDK	2	Unmodified	958.58515	0.5851534	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.18		7	11						4	5	5	7	5	41.787	39.472	2;3	0.0018501	32067	160511_QHF_FH_JSI9i_3	114.6	53.641			0.87352	0.88229	58.25	22	6	Median	1.5383	1.2059	93.682	5	2	Median	0.88993	1.0148	21.266	5	0	Median	0.68779	0.70073	72.163	7	4	Median	0.82856	0.87055	19.488	5	0	Median	17636000000	8209300000	9426600000	2704200000	1081700000	1622400000	2984400000	1619600000	1364900000	6792600000	3054800000	3737700000	5154700000	2453200000	2701500000	17082	1073;1426;1270	16186	103669;103670;103671;103672;103673;103674;103675;103676;103677;103678;103679;103680;103681;103682;103683;103684;103685;103686;103687;103688;103689;103690	139886;139887;139888;139889;139890;139891;139892;139893;139894;139895;139896;139897;139898;139899;139900;139901;139902;139903;139904;139905;139906;139907;139908;139909;139910;139911;139912;139913;139914;139915;139916;139917;139918	139901			33	
FVIKPIDK	2	Acetyl (K)	1000.5957	0.59571809	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	1	0	0	1		By matching	By MS/MS	By MS/MS	14.8	0.433							1	3			1	2	1	68.387	57.57	2	0.012669	30972	160513_QHF_FH_JSI11Kac_5	70.919	25.201			0.57768	0.63156	40.729	4	0	Median	NaN	NaN	NaN	0	0	Median	0.64677	0.7658	NaN	1	0	Median	0.46593	0.45832	56.405	2	0	Median	0.51597	0.58404	NaN	1	0	Median	41165000	28129000	13036000	0	0	0	4850600	3022400	1828100	29835000	21564000	8271100	6479200	3542900	2936300	17083	1073;1426;1270	16186	103691;103692;103693;103694	139919;139920	139919	914		2	
FVILSAHK	1	Unmodified	913.53854	0.53853756	1885	P56945;Q14511	BCAR1;NEDD9	Breast cancer anti-estrogen resistance protein 1;Enhancer of filamentation 1;Enhancer of filamentation 1 p55	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			36.807	35.35	2	0.0064747	29475	160511_QHF_FH_JSI10i_3	71.342	58.354			0.38599	0.38112	11.121	2	2	Median	0.49371	0.4123	NaN	1	1	Median	0.30177	0.3523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31917000	24098000	7818500	13925000	10353000	3572800	17991000	13746000	4245700	0	0	0	0	0	0	17084	1885	16187	103695;103696	139921;139922;139923	139922			3	
FVINYDYPNSSEDYIHR	0	Unmodified	2130.9647	0.96468371	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.3		7	6						3	3	5	3	5	69.297	66.946	2;3	4.6927E-53	59126	160511_QHF_FH_JSI11i_2	201.3	193.21			1.0415	1.0704	27.76	15	5	Median	1.2898	1.0862	2.7344	3	2	Median	0.85045	1.0341	47.734	4	1	Median	0.92918	0.92447	28.016	3	0	Median	1.0415	1.0945	13.527	5	2	Median	4854400000	2392200000	2462200000	918540000	387650000	530890000	1204000000	678960000	525060000	1254900000	608380000	646520000	1476900000	717190000	759740000	17085	1128	16188	103697;103698;103699;103700;103701;103702;103703;103704;103705;103706;103707;103708;103709;103710;103711;103712	139924;139925;139926;139927;139928;139929;139930;139931;139932;139933;139934;139935;139936;139937;139938;139939;139940;139941;139942;139943;139944;139945;139946;139947;139948;139949;139950	139936			27	
FVINYDYPNSSEDYVHR	0	Unmodified	2116.949	0.94903365	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.68		9	2						3	3	4	4	3	65.974	63.424	2;3	1.9289E-30	56278	160511_QHF_FH_JSI10i_2	233.37	193.45			1.0152	1.0685	21.317	13	2	Median	1.0152	0.87893	9.5264	3	0	Median	0.89273	1.0926	9.7256	3	0	Median	1.1675	1.1648	20.317	4	1	Median	0.91703	1.0242	26.516	3	1	Median	2933000000	1533300000	1399700000	483620000	246520000	237100000	907360000	492170000	415190000	961490000	472350000	489140000	580560000	322240000	258320000	17086	3893	16189	103713;103714;103715;103716;103717;103718;103719;103720;103721;103722;103723;103724;103725;103726	139951;139952;139953;139954;139955;139956;139957;139958;139959;139960;139961;139962;139963;139964;139965;139966;139967;139968;139969;139970;139971;139972;139973	139966			23	
FVIPLHSA	0	Unmodified	882.49634	0.49633839	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.608	60.294	2	3.5848E-05	51731	160511_QHF_FH_JSI12i_2	137.44	102.73			0.89399	0.98133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89399	0.98133	NaN	1	0	Median	60438000	30523000	29916000	0	0	0	0	0	0	0	0	0	60438000	30523000	29916000	17087	4069	16190	103727	139974	139974			1	
FVIQGAGAK	1	Unmodified	889.50215	0.50215205	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		39.152	29.639	2	0.044198	16394	160513_QHF_FH_JSI11Kac_6	43.124	16.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17088	3860	16191	103728	139975	139975			1	
FVKQDQVCIAR	1	Acetyl (K)	1404.7184	0.71836919	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	52.575	41.969	2	4.7978E-07	24471	160513_QHF_FH_JSI11Kac_4	112.75	92.962			0.74998	0.78703	79.317	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0974	1.2977	NaN	1	0	Median	0.28079	0.27439	NaN	1	0	Median	0.74998	0.78703	NaN	1	0	Median	14209000	9755600	4453800	0	0	0	3693700	2162100	1531600	7547700	5743700	1804000	2968000	1849800	1118200	17089	1069;3467	16192	103729;103730;103731	139976;139977;139978	139977	906		3	
FVLAALLK	1	Unmodified	873.56878	0.56877505	2704	Q15751	HERC1	Probable E3 ubiquitin-protein ligase HERC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		2	1	2	87.902	87.282	2	0.0021077	42336	160513_QHF_FH_JSI11Kac_6	76.847	50.953			0.85948	0.96102	63.412	4	4	Median	NaN	NaN	NaN	0	0	Median	0.72512	0.85859	82.821	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95795	0.98776	70.763	2	2	Median	51195000	29194000	22001000	0	0	0	17858000	10470000	7387700	0	0	0	33337000	18724000	14613000	17090	2704	16193	103732;103733;103734;103735;103736	139979;139980;139981;139982;139983	139981			5	
FVLEWTWNK	1	Unmodified	1221.6182	0.61824444	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0				By MS/MS	16	0									2				2	86.608	77.166	2	0.00080498	41221	160513_QHF_FH_JSI12Kac_6	90.657	59.583			1.0087	1.0928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0087	1.0928	NaN	1	1	Median	22472000	11492000	10979000	0	0	0	0	0	0	0	0	0	22472000	11492000	10979000	17091	3819	16194	103737;103738	139984;139985	139984			2	
FVLHAVQLVK	1	Unmodified	1152.7019	0.70191449	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.51		5	8						8	5	6	5	5	63.327	59.448	2;3	5.1654E-09	32394	160513_QHF_FH_JSI11Kac_6	135.79	113.7			0.86172	0.8676	43.49	21	8	Median	1.0597	0.8676	18.498	5	0	Median	0.75199	0.88094	44.339	6	2	Median	0.82342	0.8053	32.748	5	3	Median	1.1081	1.1662	68.018	5	3	Median	3020900000	1486600000	1534300000	587980000	267900000	320080000	933400000	496080000	437320000	767370000	360440000	406930000	732150000	362200000	369960000	17092	1316	16195	103739;103740;103741;103742;103743;103744;103745;103746;103747;103748;103749;103750;103751;103752;103753;103754;103755;103756;103757;103758;103759	139986;139987;139988;139989;139990;139991;139992;139993;139994;139995;139996;139997;139998;139999;140000;140001;140002;140003;140004;140005;140006;140007;140008;140009;140010;140011;140012;140013;140014;140015;140016;140017;140018;140019;140020	139997			35	
FVLINWTGEGVNDVRK	1	Unmodified	1845.9737	0.97373226	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4	2	3	3	2	79.083	74.984	2;3	1.6782E-16	69349	160511_QHF_FH_JSI11i_3	122.42	98.57			0.83098	0.77135	22.478	9	1	Median	1.1643	0.96966	40.971	2	1	Median	0.83098	0.98013	18.131	3	0	Median	0.82091	0.76912	0.41074	2	0	Median	0.74341	0.77577	30.423	2	0	Median	1148900000	532530000	616390000	233490000	86451000	147040000	523590000	261550000	262050000	286090000	124730000	161360000	105750000	59804000	45945000	17093	5346	16196	103760;103761;103762;103763;103764;103765;103766;103767;103768;103769	140021;140022;140023;140024;140025;140026;140027;140028;140029;140030;140031;140032;140033;140034;140035;140036;140037;140038;140039	140024			19	
FVLLSAQGSLMFHK	1	Oxidation (M)	1592.8385	0.83848433	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		78.185	68.868	3	0.002667	37667	160513_QHF_FH_JSI11Kac_6	60.901	49.956			1.5712	1.5334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5712	1.5334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26475000	10230000	16245000	0	0	0	0	0	0	26475000	10230000	16245000	0	0	0	17094	558	16197	103770	140040	140040		208	1	
FVLLSAQGSLMFHK	1	Unmodified	1576.8436	0.8435697	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0		By MS/MS		By MS/MS	11.7	6.13			1						2		2		1	81.215	77.415	2;3	3.3535E-17	41354	160513_QHF_FH_JSI10Kac_6	179.46	158.21			1.8884	2.2553	36.758	3	2	Median	NaN	NaN	NaN	0	0	Median	2.0545	2.4598	12.278	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3255	1.325	NaN	1	1	Median	626370000	274610000	351760000	0	0	0	412790000	162350000	250440000	0	0	0	213570000	112260000	101320000	17095	558	16197	103771;103772;103773	140041;140042;140043	140042			2	
FVLNLIK	1	Unmodified	845.53747	0.53747492	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.47		5	5					1	5	4	4	3	5	75.743	71.927	2	0.0013513	64850	160511_QHF_FH_JSI9i_2	121.68	87.946			0.97047	0.93464	63.471	16	7	Median	1.0355	0.88072	48.209	4	1	Median	0.82963	0.95018	60.49	4	2	Median	1.1042	1.0863	26.068	3	0	Plateau	0.96688	1.0464	100.42	5	4	Median	2279300000	1131500000	1147800000	380300000	188240000	192060000	619740000	344470000	275270000	638260000	297350000	340920000	641050000	301440000	339600000	17096	3723	16198	103774;103775;103776;103777;103778;103779;103780;103781;103782;103783;103784;103785;103786;103787;103788;103789	140044;140045;140046;140047;140048;140049;140050;140051;140052;140053;140054;140055;140056;140057;140058;140059;140060;140061;140062;140063;140064;140065;140066;140067;140068;140069;140070;140071;140072	140058			29	
FVLPLQDHTIK	1	Unmodified	1309.7394	0.73942221	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	62.954	62.303	3	7.6004E-07	53794	160511_QHF_FH_JSI12i_2	117.02	105.81			0.92671	0.94201	20.029	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1436	1.0853	NaN	1	0	Median	0.75099	0.81762	NaN	1	1	Median	137290000	67045000	70250000	0	0	0	0	0	0	56695000	28746000	27949000	80600000	38299000	42301000	17097	1804	16199	103790;103791	140073;140074	140074			1	
FVLPLQDHTIKK	2	Unmodified	1437.8344	0.83438523	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							2	1		1	52.863	51.916	4	2.6616E-05	44075	160511_QHF_FH_JSI12i_3	100.93	94.983			0.65212	0.54507	38.779	4	4	Median	0.65212	0.54507	5.5907	2	2	Median	0.36328	0.43869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0376	1.0683	NaN	1	1	Median	398300000	202110000	196190000	107860000	57965000	49896000	14913000	10403000	4509800	0	0	0	275530000	133740000	141780000	17098	1804	16200	103792;103793;103794;103795	140075;140076;140077;140078	140078			4	
FVLQDGAHHMVDSNEISFIR	0	Unmodified	2314.1165	0.1164501	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	74.026	73.852	3;4	9.1291E-11	63993	160511_QHF_FH_JSI12i_3	125.09	116.04			0.89062	0.90839	34.139	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1664	1.0833	54.062	2	1	Median	0.89062	0.90839	26.278	3	2	Median	600040000	305080000	294960000	0	0	0	0	0	0	223760000	103220000	120540000	376280000	201860000	174410000	17099	4221	16201	103796;103797;103798;103799;103800	140079;140080;140081;140082;140083;140084	140081			6	
FVLSGANIMCPGLTSPGAK	1	Unmodified	1918.9645	0.96448948	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.49	84.404	2;3	2.1936E-16	73292	160511_QHF_FH_JSI12i_3	175.15	162.59			1.3258	1.3175	33.294	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0899	1.0411	NaN	1	0	Median	1.6128	1.6672	NaN	1	1	Median	47865000	20175000	27690000	0	0	0	0	0	0	30664000	14666000	15998000	17201000	5509200	11692000	17100	5395	16202	103801;103802	140085;140086	140086			2	
FVLSGNLHGGSVVASYPFDDSPEHK	1	Unmodified	2658.2714	0.27143042	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		73.346	73.346	4	1.9594E-06	65512	160511_QHF_FH_JSI11i_3	57.922	55.081			1.371	1.2882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.371	1.2882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145360000	67722000	77634000	0	0	0	0	0	0	145360000	67722000	77634000	0	0	0	17101	594	16203	103803	140087	140087			1	
FVLSQAK	1	Unmodified	791.45414	0.45413923	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		28.399	27.763	2	0.01534	24373	160511_QHF_FH_JSI10i_2	64.803	31.065			0.70766	0.73762	34.218	4	0	Median	0.55897	0.46401	NaN	1	0	Median	0.49852	0.61922	NaN	1	0	Median	0.93155	0.92969	7.9853	2	0	Median	NaN	NaN	NaN	0	0	Median	1142400000	538950000	603420000	389340000	151290000	238060000	370340000	211460000	158880000	382690000	176200000	206490000	0	0	0	17102	3603	16204	103804;103805;103806;103807	140088;140089;140090	140090			3	
FVLSSGK	1	Unmodified	736.41194	0.41194006	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.41	4	5	5			2	3	4	4	7	7	7	6	30.027	25.2	2	0.0048398	22625	160511_QHF_FH_JSI12i_1	97.071	32.295			1.0005	1.0621	45.61	27	5	Median	1.1289	0.97799	78.023	7	4	Median	0.8852	1.0342	16.04	7	0	Median	1.1277	1.1097	42.058	7	1	Median	1.0229	1.1086	30.963	6	0	Median	26917000000	12992000000	13925000000	8856000000	4058100000	4797900000	5254200000	2863200000	2391000000	7277000000	3416000000	3861100000	5529400000	2654200000	2875100000	17103	1297	16205	103808;103809;103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822;103823;103824;103825;103826;103827;103828;103829;103830;103831;103832;103833;103834	140091;140092;140093;140094;140095;140096;140097;140098;140099;140100;140101;140102;140103;140104;140105;140106;140107;140108;140109;140110;140111;140112;140113;140114;140115;140116;140117;140118;140119;140120;140121;140122;140123;140124;140125;140126;140127;140128;140129;140130;140131	140099			41	
FVLSSGKFYGDEEK	2	Acetyl (K)	1646.7828	0.78280317	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								4			1	2	1	75.975	65.399	2;3	2.6819E-07	34769	160513_QHF_FH_JSI11Kac_5	116.54	101.27			0.26173	0.2609	77.418	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95174	1.0772	NaN	1	0	Median	0.2873	0.28411	12.051	2	0	Median	NaN	NaN	NaN	0	0	Median	36943000	28222000	8720300	0	0	0	2148800	1179100	969790	33434000	25683000	7750500	1360000	1360000	0	17104	1297	16206	103835;103836;103837;103838	140132;140133;140134;140135;140136;140137	140133	1224;1225		6	
FVMKPPQVVR	1	Unmodified	1199.6849	0.68488422	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	2	1	1	47.308	46.303	3	0.0052982	38885	160511_QHF_FH_JSI10i_3	45.368	40.474			0.72949	0.72606	41.375	5	2	Median	0.5659	0.45144	55.123	2	2	Median	0.64519	0.72606	NaN	1	0	Median	0.94728	0.88477	NaN	1	0	Median	0.72949	0.73434	NaN	1	0	Median	586350000	379660000	206690000	335760000	226040000	109720000	142010000	91027000	50980000	79163000	45254000	33909000	29417000	17340000	12077000	17105	1169	16207	103839;103840;103841;103842;103843;103844	140138;140139;140140;140141;140142;140143	140139			6	
FVMLLPSSTHTIPFYPNPLHPRPFPSSR	0	Unmodified	3234.6801	0.6800802	5597	Q9Y3I1	FBXO7	F-box only protein 7	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	16	0									3	1		1	1	86.503	77.378	5	0.018749	42566	160513_QHF_FH_JSI9Kac_6	31.76	21.963			1.0057	1.0648	50.355	3	0	Median	2.7643	2.3811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96981	0.94253	NaN	1	0	Median	1.0057	1.0648	NaN	1	0	Median	136710000	55019000	81688000	52076000	10270000	41806000	0	0	0	45364000	21947000	23417000	39266000	22801000	16465000	17106	5597	16208	103845;103846;103847	140144	140144			1	
FVMQEEFSR	0	Unmodified	1171.5332	0.53319418	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.84	4	4	2					4	4	4	4	5	5	52.763	47.931	2	2.2074E-16	42007	160511_QHF_FH_JSI9i_2	175.38	150.45			1.0556	1.0656	17.385	18	1	Median	1.0639	0.90303	21.356	4	1	Median	0.7728	0.91639	18.611	4	0	Median	1.1336	1.1108	12.43	5	0	Median	1.0259	1.0686	14.084	5	0	Median	13516000000	6681600000	6834300000	2236900000	963720000	1273200000	3557800000	1955600000	1602200000	4674300000	2195700000	2478600000	3046900000	1566600000	1480300000	17107	1344	16209	103848;103849;103850;103851;103852;103853;103854;103855;103856;103857;103858;103859;103860;103861;103862;103863;103864;103865	140145;140146;140147;140148;140149;140150;140151;140152;140153;140154;140155;140156;140157;140158;140159;140160;140161;140162;140163;140164;140165;140166;140167;140168;140169;140170;140171;140172;140173;140174;140175	140161			31	
FVMQEEFSR	0	Oxidation (M)	1187.5281	0.52810881	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	28.826	27.96	2	0.00023507	23479	160511_QHF_FH_JSI12i_2	88.819	78.908			0.78522	0.77027	64.288	3	1	Median	NaN	NaN	NaN	0	0	Median	0.25282	0.30173	NaN	1	1	Median	0.78522	0.77027	NaN	1	0	Median	0.93551	1.0332	NaN	1	0	Median	222360000	133850000	88506000	0	0	0	64059000	45358000	18701000	81278000	52580000	28698000	77020000	35913000	41106000	17108	1344	16209	103866;103867;103868	140176;140177;140178;140179;140180	140177		984	5	
FVMQEEFSRDGK	1	Unmodified	1471.6766	0.67656396	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.898	40.687	2	0.00027931	34722	160511_QHF_FH_JSI12i_3	102.52	86.952			1.1437	1.1429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1437	1.1429	NaN	1	0	Median	42604000	17840000	24764000	0	0	0	0	0	0	0	0	0	42604000	17840000	24764000	17109	1344	16210	103869	140181;140182	140181			2	
FVMQITLYAPR	0	Unmodified	1337.7166	0.71657828	5778				yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.356	57.824	3	0.001933	48735	160511_QHF_FH_JSI10i_3	39.917	31.188	+		0.97965	0.93047	7.9851	2	0	Median	1.1852	0.98452	NaN	1	0	Median	0.80972	0.87939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6731300000	3311900000	3419400000	2813800000	1209300000	1604500000	3917500000	2102600000	1814900000	0	0	0	0	0	0	17110	5778	16211	103870;103871	140183;140184;140185;140186;140187	140184			5	
FVMVVDSSNTALRDNEIR	0	Unmodified	2065.0262	0.026238111	5390	Q9UL33	TRAPPC2L	Trafficking protein particle complex subunit 2-like protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.091	62.805	3	0.0014333	54170	160511_QHF_FH_JSI12i_3	50.608	41.028			0.84581	0.95135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84581	0.95135	NaN	1	1	Median	71479000	38509000	32971000	0	0	0	0	0	0	0	0	0	71479000	38509000	32971000	17111	5390	16212	103872	140188	140188			1	
FVNLFPEVKPTIQDVLR	1	Unmodified	2014.1251	0.12514752	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	100.92	100.84	3	2.2665E-07	83422	160511_QHF_FH_JSI10i_3	126	116.42			0.8457	0.80613	31.883	6	2	Median	1.0025	0.82975	24.299	2	0	Median	0.5602	0.65946	58.039	2	1	Median	0.97038	0.93	NaN	1	0	Median	0.65086	0.6694	NaN	1	1	Median	715490000	408750000	306750000	131810000	61548000	70267000	169890000	102350000	67547000	301180000	175760000	125420000	112600000	69093000	43512000	17112	635	16213	103873;103874;103875;103876;103877;103878	140189;140190;140191;140192;140193;140194;140195;140196;140197;140198	140192			10	
FVNLGIEPPK	1	Unmodified	1112.623	0.62299547	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.99	2	7						1		2	2	4	2	62.774	60.593	2;3	3.3703E-08	52743	160511_QHF_FH_JSI11i_2	140.75	117.33			0.90587	1.0156	41.985	7	1	Median	0.93481	0.79454	NaN	1	0	Median	0.86813	1.0329	2.3803	2	0	Median	0.90024	0.91108	62.932	3	1	Median	0.91289	1.0242	NaN	1	0	Median	755420000	398000000	357420000	116140000	57811000	58330000	227800000	130530000	97268000	250080000	127390000	122690000	161400000	82267000	79135000	17113	1449	16214	103879;103880;103881;103882;103883;103884;103885;103886;103887;103888	140199;140200;140201;140202;140203;140204;140205;140206;140207;140208;140209;140210	140206			10	
FVNPEDVAR	0	Unmodified	1045.5193	0.51925868	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	35.083	34.283	2	0.0018695	30729	160511_QHF_FH_JSI10i_1	67.169	57.183			1.1001	1.0731	40.971	6	2	Median	1.7334	1.4738	53.97	2	1	Median	0.71147	0.85234	NaN	1	0	Median	1.948	1.9303	NaN	1	1	Median	0.91601	0.98408	21.33	2	0	Median	489060000	233950000	255100000	126240000	52072000	74169000	125160000	72694000	52471000	111900000	50242000	61659000	125750000	58946000	66806000	17114	2291	16215	103889;103890;103891;103892;103893;103894	140211;140212;140213;140214;140215	140213			5	
FVNVVPTFGK	1	Unmodified	1106.6124	0.61243078	2029	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.2	3	12	5				5	4	3	5	7	11	9	69.729	65.162	2;3	3.2213E-08	53790	160511_QHF_FH_JSI9i_3	125.82	100.92			0.98968	1.0087	64.081	29	18	Median	0.98968	0.84476	55.575	5	2	Median	0.84448	1.0087	44.446	5	2	Median	1.1633	1.0961	84.13	11	9	Median	0.98053	1.0461	56.813	8	5	Median	25002000000	10997000000	14004000000	5323100000	2199000000	3124100000	4033100000	1699000000	2334100000	9799900000	4082100000	5717900000	5845500000	3017200000	2828200000	17115	2029	16216	103895;103896;103897;103898;103899;103900;103901;103902;103903;103904;103905;103906;103907;103908;103909;103910;103911;103912;103913;103914;103915;103916;103917;103918;103919;103920;103921;103922;103923;103924;103925;103926	140216;140217;140218;140219;140220;140221;140222;140223;140224;140225;140226;140227;140228;140229;140230;140231;140232;140233;140234;140235;140236;140237;140238;140239;140240;140241;140242;140243;140244;140245;140246;140247;140248;140249;140250;140251;140252;140253;140254;140255;140256;140257;140258;140259;140260;140261;140262;140263;140264	140239			48	
FVNVVPTFGKK	2	Unmodified	1234.7074	0.7073938	2029	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							4	2	2	3	53.827	52.957	2;3	2.3379E-05	44410	160511_QHF_FH_JSI10i_3	79.23	74.685			3.337	2.6802	95.276	11	7	Median	2.0202	1.6739	110.21	4	2	Median	0.6445	0.73457	16.908	2	0	Median	3.4606	3.2289	7.7188	2	2	Median	3.3629	3.4749	120.53	3	3	Median	2399300000	1028500000	1370800000	700390000	317490000	382910000	414050000	223430000	190620000	278740000	82474000	196270000	1006100000	405130000	600960000	17116	2029	16217	103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937	140265;140266;140267;140268;140269;140270;140271;140272;140273;140274;140275;140276	140267			11	
FVNVVPTFGKK	2	Acetyl (K)	1276.718	0.71795849	2029	P62861	FAU	40S ribosomal protein S30	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.75							3	6	7	3	4	5	4	76.37	66.603	2;3	4.9211E-10	32785	160513_QHF_FH_JSI12Kac_5	134.59	113.69			0.88554	0.91067	76.541	16	2	Median	0.89796	0.75687	156.56	3	1	Plateau	0.73564	0.87892	7.116	4	0	Median	0.9546	0.91369	77.53	5	1	Median	0.86813	0.92934	2.7746	4	0	Median	1397900000	772100000	625770000	236960000	116370000	120590000	402860000	255570000	147290000	347140000	178600000	168530000	410910000	221560000	189350000	17117	2029	16217	103938;103939;103940;103941;103942;103943;103944;103945;103946;103947;103948;103949;103950;103951;103952;103953	140277;140278;140279;140280;140281;140282;140283;140284;140285;140286;140287;140288;140289;140290;140291;140292;140293;140294;140295;140296;140297	140287	2072		21	
FVNWQVDGEYR	0	Unmodified	1411.6521	0.65206377	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.25		5	6						5	3	4	4	5	58.451	54.807	2	1.7999E-29	47044	160511_QHF_FH_JSI12i_2	185.6	165.29			0.87489	0.89965	37.231	14	7	Median	0.99422	0.83316	40.465	3	1	Median	0.68039	0.84139	65.391	3	2	Median	0.8642	0.84918	19.389	4	2	Median	0.87489	0.94102	22.152	4	2	Median	1507200000	729050000	778110000	253740000	123220000	130510000	314990000	178700000	136290000	561540000	258960000	302580000	376880000	168160000	208720000	17118	754	16218	103954;103955;103956;103957;103958;103959;103960;103961;103962;103963;103964;103965;103966;103967;103968;103969	140298;140299;140300;140301;140302;140303;140304;140305;140306;140307;140308;140309;140310;140311;140312;140313;140314;140315;140316;140317;140318;140319;140320;140321;140322	140301			25	
FVPAEMGTHTVSVK	1	Unmodified	1501.7599	0.75989966	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.97		6	10						6	4	6	6	6	47.29	44.34	2;3	1.0231E-07	38209	160511_QHF_FH_JSI12i_2	111.83	108.75			1.1111	1.0846	32.392	17	6	Median	1.0299	0.88696	28.455	2	0	Median	0.68502	0.82042	61.714	4	3	Median	1.1572	1.0948	8.0127	5	1	Median	0.95732	1.0368	24.004	6	2	Median	5972500000	2751200000	3221300000	248880000	110950000	137930000	448360000	246900000	201460000	2515200000	1049300000	1465800000	2760100000	1344100000	1416100000	17119	1192	16219	103970;103971;103972;103973;103974;103975;103976;103977;103978;103979;103980;103981;103982;103983;103984;103985;103986;103987;103988;103989;103990;103991	140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333;140334;140335;140336;140337;140338;140339;140340;140341;140342;140343;140344;140345;140346;140347;140348;140349;140350;140351;140352	140328			30	
FVPAEMGTHTVSVK	1	Oxidation (M)	1517.7548	0.75481428	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	11.7	6.13			1						2	1		1	1	36.771	30.548	3	0.00010353	16429	160513_QHF_FH_JSI9Kac_6	84.753	77.388			1.8759	1.0621	38.359	3	0	Plateau	1.0891	0.92357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0814	1.0621	NaN	1	0	Median	1.8764	1.9034	NaN	1	0	Median	199530000	78110000	121420000	17131000	8898500	8232700	0	0	0	15332000	8074500	7257500	167070000	61137000	105930000	17120	1192	16219	103992;103993;103994	140353;140354;140355;140356	140355		815	4	
FVPAEMGTHTVSVKYK	2	Acetyl (K)	1834.9288	0.9287559	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		64.563	55.366	2;3	2.7323E-07	29983	160513_QHF_FH_JSI11Kac_6	108.34	83.402			0.38066	0.40479	85.281	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62991	0.73982	NaN	1	1	Median	0.23004	0.22149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138020000	106150000	31870000	0	0	0	29643000	19162000	10482000	108380000	86989000	21388000	0	0	0	17121	1192	16220	103995;103996;103997	140357;140358;140359;140360	140358	1053		4	
FVPAEMGTHTVSVKYK	2	Acetyl (K);Oxidation (M)	1850.9237	0.92367052	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	1	1			By MS/MS	By MS/MS	16	0									2			1	1	52.876	43.122	3	0.0010217	23355	160513_QHF_FH_JSI11Kac_6	68.481	43.545			1.2309	1.2505	16.475	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4261	1.405	NaN	1	1	Median	1.0623	1.113	NaN	1	1	Median	45755000	15338000	30417000	0	0	0	0	0	0	38725000	12018000	26706000	7030700	3319400	3711200	17122	1192	16220	103998;103999	140361;140362	140361	1053	815	2	
FVPLLPGNR	0	Unmodified	1011.5866	0.58655038	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	60.586	59.714	2	2.5062E-06	52876	160511_QHF_FH_JSI11i_3	126.24	103.62			0.78308	0.83891	31.482	8	1	Median	0.91611	0.7527	53.211	2	1	Median	0.75793	0.89259	29.66	2	0	Median	0.80005	0.80413	27.835	2	0	Median	0.6657	0.71452	43.583	2	0	Median	4754700000	2657600000	2097100000	1185700000	617030000	568710000	1414200000	853900000	560320000	1148400000	664070000	484350000	1006300000	522610000	483730000	17123	2094	16221	104000;104001;104002;104003;104004;104005;104006;104007	140363;140364;140365;140366;140367;140368;140369;140370;140371;140372;140373;140374;140375;140376;140377;140378;140379;140380;140381;140382	140364			20	
FVPLPASAK	1	Unmodified	928.5382	0.53820321	299	O15533	TAPBP	Tapasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		3	2					1		1	1	2	2	44.266	41.877	2	0.00092107	36929	160511_QHF_FH_JSI10i_2	83.265	71.058			1.2406	1.3038	14.298	6	1	Median	1.9655	1.7282	NaN	1	0	Median	1.1727	1.406	NaN	1	1	Median	1.3023	1.223	6.4251	2	0	Median	1.1817	1.2567	7.8342	2	0	Median	545600000	243180000	302410000	103190000	29521000	73665000	154210000	82948000	71263000	50463000	19109000	31353000	237740000	111610000	126130000	17124	299	16222	104008;104009;104010;104011;104012;104013	140383;140384;140385;140386;140387;140388	140387			6	
FVPPALEK	1	Unmodified	899.51165	0.5116541	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	1	3	2	46.781	46.069	2	0.0047708	40179	160511_QHF_FH_JSI9i_2	75.213	62.224			1.3397	1.4908	45.444	7	5	Median	2.123	1.8333	NaN	1	1	Median	1.456	1.7984	NaN	1	1	Median	2.0416	2.0942	66.299	3	2	Plateau	1.1652	1.2695	22.731	2	1	Median	1972500000	844370000	1128100000	265850000	92611000	173240000	356170000	159600000	196570000	843470000	352720000	490750000	507020000	239440000	267580000	17125	3623	16223	104014;104015;104016;104017;104018;104019;104020	140389;140390;140391;140392;140393;140394;140395;140396	140394			8	
FVPQEMGVHTVSVK	1	Unmodified	1556.8021	0.80209882	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.56		10	4						2	3	5	5	3	51.423	49.394	2;3	2.1408E-05	43602	160511_QHF_FH_JSI11i_3	112.72	84.099			0.95073	0.96265	38.179	15	10	Median	1.1307	0.96265	44.501	3	3	Median	0.60223	0.74893	46.385	5	5	Median	1.0084	1.0016	29.214	4	1	Median	0.7526	0.81503	40.593	3	1	Median	2563300000	1178300000	1385100000	57162000	31289000	25873000	890850000	415700000	475140000	886210000	382960000	503250000	729130000	348330000	380800000	17126	512	16224	104021;104022;104023;104024;104025;104026;104027;104028;104029;104030;104031;104032;104033;104034;104035;104036	140397;140398;140399;140400;140401;140402;140403;140404;140405;140406;140407;140408;140409;140410;140411;140412;140413;140414;140415;140416	140398			20	
FVPQEMGVHTVSVKYR	1	Acetyl (K)	1917.9771	0.97710307	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	68.278	59.195	3	0.00010739	32500	160513_QHF_FH_JSI10Kac_6	81.428	65.792			0.56138	0.60537	126.32	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2473	1.4789	NaN	1	0	Median	0.25267	0.24781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51502000	39169000	12333000	0	0	0	19133000	9086400	10046000	23963000	21676000	2286500	8406700	8406700	0	17127	512	16225	104037;104038;104039	140417;140418;140419	140419	259		3	
FVPQEMGVHTVSVKYR	1	Acetyl (K);Oxidation (M)	1933.972	0.9720177	512	O75369	FLNB	Filamin-B	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		57.366	47.64	3	0.0061411	25792	160513_QHF_FH_JSI11Kac_6	51.695	35.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17128	512	16225	104040	140420	140420	259	186	1	
FVPSSLSWYGAYLVNAYPLDMSQYFR	0	Unmodified	3073.4684	0.46841567	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.991	90.901	3	3.0445E-43	51706	160513_QHF_FH_JSI9Kac_6	170.56	161.46			1.0744	1.0136	12.14	3	0	Median	1.4357	1.2206	NaN	1	0	Median	0.82288	0.97153	NaN	1	0	Median	1.0744	1.0136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1639000000	727920000	911030000	406460000	141660000	264790000	827890000	403450000	424440000	404610000	182800000	221810000	0	0	0	17129	1240	16226	104041;104042;104043	140421;140422;140423;140424	140422			4	
FVPTALR	0	Unmodified	802.47012	0.47012364	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	38.824	37.982	2	0.0016681	31002	160511_QHF_FH_JSI9i_3	118.06	37.679			1.0051	1.0706	27.79	5	1	Median	0.96633	0.8104	39.374	2	1	Median	1.0051	1.1728	NaN	1	0	Median	0.94272	0.90589	NaN	1	0	Median	1.1734	1.2092	NaN	1	0	Median	1142700000	564580000	578110000	342910000	153850000	189060000	239110000	139050000	100060000	242490000	121530000	120960000	318180000	150140000	168040000	17130	5543	16227	104044;104045;104046;104047;104048	140425;140426;140427;140428;140429;140430	140427			6	
FVPYLIAGIQHSCQDIGAK	1	Unmodified	2116.0775	0.0775454	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.49		6	5						6	2	5	5	5	82.02	78.842	3	2.5284E-11	70635	160511_QHF_FH_JSI12i_3	131.25	122.54			5.527	5.467	215.63	14	14	Median	6.161	5.401	NaN	1	1	Median	8.4888	10.218	183.6	4	4	Median	3.9155	3.7635	233.22	5	5	Median	4.3119	4.6548	282.23	4	4	Median	2112000000	902000000	1210000000	90256000	66466000	23790000	444380000	166140000	278250000	834440000	360990000	473450000	742890000	308400000	434490000	17131	1015	16228	104049;104050;104051;104052;104053;104054;104055;104056;104057;104058;104059;104060;104061;104062;104063;104064;104065	140431;140432;140433;140434;140435;140436;140437;140438;140439;140440;140441;140442;140443;140444;140445;140446;140447;140448;140449;140450	140444			20	
FVPYSYFSR	0	Unmodified	1164.5604	0.56039521	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1	1	2	1	1	64.431	62.145	2	4.4315E-05	50991	160511_QHF_FH_JSI9i_3	98.629	85.252			0.76916	0.87933	38.424	5	1	Median	1.1143	0.88967	NaN	1	0	Median	0.5592	0.6535	41.977	2	1	Median	1.4161	1.4149	NaN	1	0	Median	0.73441	0.7481	NaN	1	0	Median	538160000	245340000	292820000	158720000	65205000	93515000	184240000	90104000	94133000	53556000	23996000	29560000	141640000	66032000	75613000	17132	1201	16229	104066;104067;104068;104069;104070	140451;140452;140453;140454;140455;140456;140457	140452			7	
FVPYYDLFMPSLK	1	Unmodified	1618.8105	0.81053824	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.84		9	2						1	4	4	2	2	101.01	100.01	2;3	5.601E-23	90209	160511_QHF_FH_JSI10i_2	182.28	0			0.96631	0.88174	16.516	10	2	Median	1.0258	0.836	5.1163	4	1	Median	0.71724	0.87907	19.918	2	1	Median	1.0049	1.0162	21.889	2	0	Median	0.97599	1.0942	17.988	2	0	Median	4250500000	2276100000	1974300000	883920000	440320000	443600000	1036900000	658450000	378470000	1443100000	733250000	709900000	886470000	444100000	442370000	17133	127	16230	104071;104072;104073;104074;104075;104076;104077;104078;104079;104080;104081;104082	140458;140459;140460;140461;140462;140463;140464;140465;140466;140467;140468;140469;140470	140467			13	
FVPYYDLFMPSLKHIVENAVQK	2	Acetyl (K)	2679.3771	0.37708146	127	O00410	IPO5	Importin-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		98.737	89.325	3	8.871E-06	51159	160513_QHF_FH_JSI11Kac_6	119.27	109.15			0.19406	0.185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19406	0.185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51046000	40618000	10428000	0	0	0	0	0	0	51046000	40618000	10428000	0	0	0	17134	127	16231	104083	140471	140471	82		1	
FVQAVIPTIEYDYTR	0	Unmodified	1813.9251	0.92505073	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	84.113	83.372	2;3	1.9472E-06	72000	160511_QHF_FH_JSI12i_2	130.01	121.9			1.2465	1.4293	34.012	7	5	Median	1.8662	1.6096	NaN	1	1	Median	1.2364	1.5383	NaN	1	1	Median	0.79031	0.80167	34.452	3	2	Median	1.43	1.5863	14.732	2	1	Median	273020000	117490000	155530000	19740000	3168200	16572000	27773000	13149000	14624000	137830000	60941000	76886000	87678000	40232000	47446000	17135	4987	16232	104084;104085;104086;104087;104088;104089;104090	140472;140473;140474;140475;140476;140477;140478;140479;140480;140481;140482	140474			11	
FVQCPDGELQK	1	Unmodified	1319.618	0.61798644	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	2	1	39.276	29.503	2	1.6953E-06	27015	160511_QHF_FH_JSI12i_1	113.1	94.117			1.7593	1.7873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7593	1.7873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2091600	784770	1306900	0	0	0	0	0	0	2091600	784770	1306900	0	0	0	17136	5487	16233	104091;104092;104093;104094	140483;140484;140485;140486	140484			4	
FVQDHFDHNISPTIGASFMTK	1	Unmodified	2391.1318	0.13176581	2461	Q13636	RAB31	Ras-related protein Rab-31	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.293	69.995	3	1.5113E-06	60651	160511_QHF_FH_JSI12i_3	73.459	65.099			1.1911	1.2179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1911	1.2179	NaN	1	0	Median	69542000	32247000	37294000	0	0	0	0	0	0	0	0	0	69542000	32247000	37294000	17137	2461	16234	104095	140487;140488;140489;140490	140490			4	
FVQETELSQR	0	Unmodified	1235.6146	0.61461563	3054	Q6IBW4	NCAPH2	Condensin-2 complex subunit H2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	27.487	26.381	2	0.010349	21995	160511_QHF_FH_JSI12i_2	57.598	38.818			0.50318	0.56333	6.3645	2	2	Median	NaN	NaN	NaN	0	0	Median	0.45611	0.53854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55511	0.58927	NaN	1	1	Median	30096000	21587000	8508800	0	0	0	17070000	13586000	3483400	0	0	0	13026000	8000300	5025400	17138	3054	16235	104096;104097	140491;140492	140491			2	
FVQEVVQSQQVAVGR	0	Unmodified	1672.8897	0.88966827	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	47.924	47.117	2	6.3526E-21	40005	160511_QHF_FH_JSI12i_2	131.43	104.1			0.20794	0.22482	102.92	3	3	Plateau	1.5227	1.2401	NaN	1	1	Median	0.14592	0.16688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29847	0.30472	NaN	1	1	Median	112480000	95243000	17235000	25514000	16518000	8995400	42955000	39978000	2977100	12183000	12183000	0	31826000	26564000	5262500	17139	3900	16236	104098;104099;104100;104101;104102;104103;104104	140493;140494;140495;140496;140497;140498;140499	140493			7	
FVQIVDEANAR	0	Unmodified	1260.6463	0.64625011	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.2		3					1			1	2	1		45.792	41.784	2	5.652E-06	36000	160511_QHF_FH_JSI11i_2	114.84	73.393			1.3758	1.2679	83.041	3	3	Plateau	0.73978	0.62886	NaN	1	1	Median	0.50193	0.58678	NaN	1	1	Median	2.5585	2.5564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98103000	43199000	54904000	49442000	27323000	22119000	2773400	1661600	1111800	45888000	14215000	31673000	0	0	0	17140	4473	16237	104105;104106;104107;104108	140500;140501;140502;140503	140502			4	
FVQLEGAHPLEK	1	Unmodified	1366.7245	0.72450043	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	41.712	40.872	3	0.0030994	35141	160511_QHF_FH_JSI11i_2	53.051	43.768			10.276	9.8223	209.86	4	4	Median	10.92	9.4392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2809	1.2657	295.4	2	2	Median	10.136	11.616	NaN	1	1	Median	154390000	53119000	101270000	23831000	2221900	21609000	0	0	0	94895000	44109000	50786000	35662000	6788100	28874000	17141	4471	16238	104109;104110;104111;104112	140504;140505;140506;140507;140508	140508			5	
FVQLINTVLNGDQHFMSALDK	1	Unmodified	2389.21	0.21001614	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.39	101.28	3	1.077E-27	83859	160511_QHF_FH_JSI10i_3	194.18	179.25			5.1721	5.4003	23.515	2	2	Median	NaN	NaN	NaN	0	0	Median	3.9549	4.573	NaN	1	1	Median	6.7638	6.3772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	162890000	11537000	151350000	25901000	0	25901000	61466000	4208600	57257000	75524000	7328600	68195000	0	0	0	17142	2454	16239	104113;104114;104115	140509;140510;140511	140510			3	
FVQLKNNSDK	2	Acetyl (K)	1233.6354	0.63535107	2207	Q03252	LMNB2	Lamin-B2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		36.924	27.475	2	0.032445	16810	160513_QHF_FH_JSI11Kac_4	55.549	31.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3725100	3725100	0	0	0	0	0	0	0	3725100	3725100	0	0	0	0	17143	2207	16240	104116	140512	140512			1	
FVQLKPGEKPVPVDQTK	3	Unmodified	1909.0673	0.067298289	544	O75586	MED6	Mediator of RNA polymerase II transcription subunit 6	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			39.377	37.886	3	0.041606	31643	160511_QHF_FH_JSI10i_3	40.962	30.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7293000	7293000	0	0	0	0	7293000	7293000	0	0	0	0	0	0	0	17144	544	16241	104117	140513	140513			1	
FVQSCAR	0	Unmodified	866.40687	0.40687146	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		7.5308	7.3345	2	0.014342	5047	160511_QHF_FH_JSI11i_2	67.035	52.622			1.2707	1.2696	100.98	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2707	1.2696	100.98	2	2	Median	NaN	NaN	NaN	0	0	Median	60640000	28389000	32251000	0	0	0	0	0	0	60640000	28389000	32251000	0	0	0	17145	1456	16242	104118;104119	140514;140515	140515			2	
FVSAIEGMHPNQEDHETFVDINPLTGIILK	1	Unmodified	3363.6809	0.68092764	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.26	101.27	4	2.1847E-10	87897	160511_QHF_FH_JSI12i_3	70.461	64.917			2.1241	2.1852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1241	2.1852	NaN	1	1	Median	968870000	115730000	853140000	0	0	0	0	0	0	471360000	0	471360000	497500000	115730000	381770000	17146	2489	16243	104120;104121	140516;140517	140517			2	
FVSEDDRNSFTLK	1	Unmodified	1556.7471	0.74708636	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	2.93		11	6					1		3	3	7	5	42.044	40.701	2;3	8.842E-05	34849	160511_QHF_FH_JSI12i_2	62.68	42.253			0.95699	0.95696	63.89	18	13	Median	1.6277	1.3007	91.728	3	3	Median	0.70318	0.85265	47.951	3	2	Median	0.57451	0.5458	81.419	7	6	Median	1.0355	1.1137	33.175	5	2	Median	9305200000	4542500000	4762600000	792590000	344510000	448080000	1323600000	631430000	692180000	4020700000	1743100000	2277600000	3168300000	1823500000	1344800000	17147	1417	16244	104122;104123;104124;104125;104126;104127;104128;104129;104130;104131;104132;104133;104134;104135;104136;104137;104138;104139	140518;140519;140520;140521;140522;140523;140524;140525;140526;140527;140528;140529;140530;140531;140532;140533;140534;140535;140536;140537;140538;140539	140520			22	
FVSELWK	1	Unmodified	907.48035	0.48035398	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.51		8	2						5	4	4	4	3	58.175	54.354	2	0.0026708	28343	160513_QHF_FH_JSI12Kac_6	94.407	42.719			1.1513	1.101	133.5	15	15	Median	2.1287	1.7741	133.98	4	4	Median	1.0634	1.2344	145.93	4	4	Median	1.1677	1.1665	147.44	4	4	Median	0.36819	0.40814	176.67	3	3	Median	5137700000	2860000000	2277700000	894100000	414130000	479970000	1209400000	742500000	466870000	1998500000	1098100000	900430000	1035800000	605330000	430450000	17148	1436	16245	104140;104141;104142;104143;104144;104145;104146;104147;104148;104149;104150;104151;104152;104153;104154	140540;140541;140542;140543;140544;140545;140546;140547;140548;140549;140550;140551;140552;140553;140554;140555;140556	140555			17	
FVSELWKDVDR	1	Acetyl (K)	1434.7143	0.71432967	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		78.82	69.506	2	0.00014891	38084	160513_QHF_FH_JSI11Kac_6	93.258	63.785			5.5771	5.4095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.5771	5.4095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20183000	12794000	7389200	0	0	0	0	0	0	20183000	12794000	7389200	0	0	0	17149	1436	16246	104155;104156	140557;140558	140558	1404		2	
FVSEMLQK	1	Unmodified	980.5001	0.50010314	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		2	2	40.416	39.457	2	0.0017165	33727	160511_QHF_FH_JSI11i_2	98.997	57.494			1.9064	1.9536	233.22	6	6	Median	1.971	1.6721	289.71	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6146	1.6255	329.8	2	2	Median	1.9064	2.1302	279.94	2	2	Median	1424100000	678440000	745640000	362850000	177840000	185010000	0	0	0	686310000	317760000	368550000	374920000	182850000	192070000	17150	5536	16247	104157;104158;104159;104160;104161;104162	140559;140560;140561;140562;140563;140564	140563			6	
FVSEMLQKNYSR	1	Acetyl (K)	1542.7501	0.75006325	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.65	54.984	2	2.0364E-07	29799	160513_QHF_FH_JSI11Kac_6	138.71	112.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11080000	11080000	0	0	0	0	0	0	0	11080000	11080000	0	0	0	0	17151	5536	16248	104163	140565	140565	3473		1	
FVSFLGR	0	Unmodified	824.45447	0.45447358	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		5	4						2	3	4	3	1	56.581	54.354	2	0.010373	29860	160513_QHF_FH_JSI10Kac_6	82.913	57.355			1.0216	0.93638	56.809	11	7	Median	1.8177	1.4705	30.915	3	2	Plateau	1.0318	1.2096	74.551	4	3	Median	0.63985	0.59313	73.875	3	2	Median	0.74068	0.76601	NaN	1	0	Median	2314700000	1305900000	1008800000	526570000	254640000	271930000	601710000	338730000	262980000	734370000	414150000	320220000	452010000	298330000	153680000	17152	1766	16249	104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174	140566;140567;140568;140569;140570;140571;140572;140573;140574	140574			9	
FVSFPTQVLAK	1	Unmodified	1235.6914	0.69140938	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	74.653	73.707	2	0.00081024	65550	160511_QHF_FH_JSI11i_3	72.928	58.933			0.92604	0.97482	31.371	7	5	Median	1.0427	0.87531	15.227	2	1	Median	0.98488	1.1703	8.785	2	1	Median	0.80062	0.81591	NaN	1	1	Median	1.061	1.1224	63.827	2	2	Median	943230000	532400000	410830000	237450000	133660000	103800000	197480000	114760000	82713000	275620000	159900000	115720000	232670000	124080000	108600000	17153	3691	16250	104175;104176;104177;104178;104179;104180;104181;104182	140575;140576;140577;140578;140579;140580;140581	140575			7	
FVSISDLLVPK	1	Unmodified	1216.7067	0.7067251	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	6.26	4	10	4					4	4	5	6	8	7	91.552	88.246	2;3	3.2849E-19	75797	160511_QHF_FH_JSI9i_3	168.83	127.8			0.93031	0.94089	52.02	25	7	Median	1.1457	0.93949	17.979	4	0	Median	0.76005	0.90903	81.025	6	1	Median	0.98691	0.9641	42.737	8	4	Median	0.90788	0.96507	49.498	7	2	Median	6409000000	3318600000	3090400000	1098700000	516100000	582630000	1381100000	847900000	533210000	2450200000	1263500000	1186800000	1478900000	691110000	787770000	17154	1702	16251	104183;104184;104185;104186;104187;104188;104189;104190;104191;104192;104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208	140582;140583;140584;140585;140586;140587;140588;140589;140590;140591;140592;140593;140594;140595;140596;140597;140598;140599;140600;140601;140602;140603;140604;140605;140606;140607;140608;140609;140610;140611;140612;140613;140614;140615;140616;140617;140618;140619;140620;140621;140622;140623;140624;140625;140626;140627;140628;140629;140630;140631;140632;140633;140634;140635;140636	140605			54	
FVSSHQGFSGILK	1	Unmodified	1405.7354	0.73539946	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	48.158	47.181	2;3	2.5701E-15	38677	160511_QHF_FH_JSI9i_3	164.64	153.88			0.93862	0.83267	48.238	7	4	Median	0.92192	0.74469	10.798	2	0	Median	0.82472	0.93704	16.701	2	2	Median	1.138	1.1055	NaN	1	0	Median	0.74327	0.77064	110.2	2	2	Median	3125100000	1888600000	1236500000	833290000	483210000	350080000	643630000	422050000	221580000	505420000	296150000	209270000	1142800000	687150000	455600000	17155	4202	16252	104209;104210;104211;104212;104213;104214;104215	140637;140638;140639;140640;140641;140642;140643;140644;140645;140646	140643			10	
FVSSLLTALFR	0	Unmodified	1252.718	0.71795849	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			94.607	87.24	2	1.3842E-13	50937	160513_QHF_FH_JSI10Kac_6	150.35	119.66			1.0359	1.2375	214.49	4	3	Median	2.5018	2.1353	323.66	2	1	Median	1.0359	1.2375	174.02	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1169500000	504340000	665160000	295540000	115230000	180310000	873960000	389110000	484850000	0	0	0	0	0	0	17156	5034	16253	104216;104217;104218;104219	140647;140648;140649;140650	140650			4	
FVSSPQTIVELFFQEVAR	0	Unmodified	2096.0942	0.094241321	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	2	2	4	102.06	96.693	2;3	5.3063E-56	50401	160513_QHF_FH_JSI12Kac_6	198.74	163.53			1.105	1.0553	21.349	7	2	Median	1.689	1.4757	NaN	1	1	Median	0.87016	1.0553	NaN	1	0	Median	1.2705	1.1923	25.042	2	1	Median	0.97917	1.0376	24.232	3	0	Median	227690000	95518000	132170000	76828000	27621000	49208000	4880500	2649200	2231300	65807000	28506000	37300000	80175000	36742000	43433000	17157	2303	16254	104220;104221;104222;104223;104224;104225;104226;104227;104228;104229	140651;140652;140653;140654;140655;140656;140657;140658;140659	140659			9	
FVSSPQTIVELFFQEVARK	1	Unmodified	2224.1892	0.18920434	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2	1	1	1	1	100.83	96.157	3	4.1856E-34	49126	160513_QHF_FH_JSI12Kac_6	162.33	137.85			0.87652	0.94797	22.704	4	1	Linear	0.91641	0.78407	NaN	1	0	Median	1.1409	1.3371	NaN	1	1	Median	1.1032	1.0026	NaN	1	0	Median	0.83815	0.89637	NaN	1	0	Median	214810000	108840000	105970000	62035000	34051000	27984000	9581900	2554700	7027200	47344000	17156000	30188000	95851000	55078000	40773000	17158	2303	16255	104230;104231;104232;104233	140660;140661;140662	140662			3	
FVSTPFHEIMSLK	1	Unmodified	1534.7854	0.78538612	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.098	75.96	3	0.0024079	67740	160511_QHF_FH_JSI11i_3	56.482	45.694			0.36971	0.36449	21.025	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32942	0.31414	NaN	1	1	Median	0.41493	0.42292	NaN	1	1	Median	44969000	23942000	21027000	0	0	0	0	0	0	19006000	10291000	8715000	25964000	13651000	12312000	17159	429	16256	104234;104235	140663;140664	140663			2	
FVTAIWNLLVTTGQEVK	1	Unmodified	1918.0564	0.056399252	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	6.22		2	3						11	3	3	7	3	98.976	92.589	2;3	3.2376E-143	48449	160513_QHF_FH_JSI12Kac_6	311.2	265.94			3.5831	3.7693	239.1	10	10	Median	2.5714	2.2349	420.29	2	2	Median	3.3781	3.9793	NaN	1	1	Median	3.8005	3.5704	227.37	5	5	Median	0.47041	0.49826	306.22	2	2	Median	3580200000	1816500000	1763700000	690930000	280420000	410520000	525590000	334770000	190830000	1738100000	745570000	992500000	625590000	455760000	169830000	17160	1844	16257	104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251	140665;140666;140667;140668;140669;140670;140671;140672;140673;140674;140675;140676;140677;140678;140679;140680	140677			16	
FVTDSNAVVQLK	1	Unmodified	1319.7085	0.70851601	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		53.696	53.284	2	0.010271	48287	160511_QHF_FH_JSI11i_1	57.204	44.99			2.0267	2.0058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0267	2.0058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26653000	8980500	17672000	0	0	0	0	0	0	26653000	8980500	17672000	0	0	0	17161	2485	16258	104252	140681	140681			1	
FVTETLEDGSR	0	Unmodified	1252.5935	0.59354583	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	36.716	36.263	2	0.015417	32545	160511_QHF_FH_JSI11i_1	51.064	39.017			1.3372	1.4111	69.846	4	4	Median	NaN	NaN	NaN	0	0	Median	1.367	1.6236	NaN	1	1	Median	1.308	1.2265	NaN	1	1	Median	0.88936	0.93041	111.83	2	2	Median	208390000	116450000	91937000	0	0	0	59529000	31232000	28296000	64044000	34957000	29087000	84818000	50264000	34554000	17162	5106	16259	104253;104254;104255;104256	140682;140683;140684;140685	140682			4	
FVTHVSDWGALATISTLEAVR	0	Unmodified	2272.1852	0.18518159	550	O75629	CREG1	Protein CREG1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				90.798	82.083	3	1.3047E-16	45854	160513_QHF_FH_JSI9Kac_6	124.2	103			1.0579	0.90077	NaN	1	0	Median	1.0579	0.90077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92848000	41493000	51355000	92848000	41493000	51355000	0	0	0	0	0	0	0	0	0	17163	550	16260	104257	140686;140687	140686			2	
FVTLLYR	0	Unmodified	910.52764	0.52763852	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4		1	3	1	66.797	59.334	2	0.0046751	32782	160513_QHF_FH_JSI10Kac_6	110.34	58.038			1.8611	2.2315	82.371	5	5	Median	NaN	NaN	NaN	0	0	Median	1.8611	2.2315	NaN	1	1	Median	3.435	3.3516	105.88	3	3	Plateau	2.3584	2.5026	NaN	1	1	Median	925750000	228050000	697700000	0	0	0	505750000	86950000	418800000	380460000	124230000	256230000	39536000	16869000	22667000	17164	984	16261	104258;104259;104260;104261;104262	140688;140689;140690;140691;140692	140692			5	
FVTLSATNAK	1	Unmodified	1050.571	0.5709599	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	34.2	33.346	2	0.00012854	29296	160511_QHF_FH_JSI10i_2	98.033	82.371			1.0091	0.85546	94.166	7	7	Median	0.7835	0.67564	33.373	2	2	Median	0.98493	1.2033	78.828	2	2	Median	0.96751	0.94996	198.28	2	2	Median	1.5695	1.6893	NaN	1	1	Median	228870000	125640000	103230000	71746000	42418000	29328000	54121000	29167000	24955000	58498000	36575000	21922000	44505000	17479000	27026000	17165	4235	16262	104263;104264;104265;104266;104267;104268;104269	140693;140694;140695;140696;140697;140698;140699	140698			7	
FVTNTTK	1	Unmodified	809.42832	0.42831841	4638	Q9H0R4	HDHD2	Haloacid dehalogenase-like hydrolase domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.365	9.6748	2	0.016874	7274	160511_QHF_FH_JSI12i_2	55.676	37.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17166	4638	16263	104270	140700	140700			1	
FVTSNTQELGK	1	Unmodified	1222.6194	0.61936665	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	2	3	28.906	28.083	2	5.9997E-06	24537	160511_QHF_FH_JSI10i_2	114.5	98.293			1.0502	0.98213	49.362	10	7	Median	1.2384	1.0514	28.616	2	0	Median	0.44457	0.51366	55.897	3	3	Plateau	0.81004	0.79946	61.01	2	2	Median	1.0527	1.1232	68.652	3	2	Median	1672000000	924100000	747930000	285880000	136960000	148920000	485000000	307910000	177100000	391010000	213020000	177990000	510140000	266220000	243930000	17167	4521	16264	104271;104272;104273;104274;104275;104276;104277;104278;104279;104280	140701;140702;140703;140704;140705;140706;140707;140708;140709;140710;140711	140711			11	
FVTSTSDHFVEGQTVAAK	1	Unmodified	1922.9374	0.93740633	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								1	2			44.062	43.068	3	4.5543E-06	37944	160511_QHF_FH_JSI10i_2	94.01	81.725			1.1898	1.5161	90.014	3	3	Plateau	0.34085	0.30129	NaN	1	1	Median	0.76856	0.93344	87.637	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112560000	58461000	54104000	30932000	19850000	11082000	81632000	38611000	43021000	0	0	0	0	0	0	17168	2564	16265	104281;104282;104283	140712;140713;140714;140715;140716	140715			5	
FVTVQTISGTGALR	0	Unmodified	1448.7987	0.798728	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.77	5	7	6					7	9	7	10	9	8	65.356	60.323	2;3	3.2045E-56	33059	160513_QHF_FH_JSI10Kac_6	215.5	176.2			1.2427	1.1611	35.871	31	14	Median	1.3433	1.1418	29.14	6	3	Median	0.80887	0.96713	47.116	10	6	Median	1.2496	1.1965	27.305	8	3	Median	1.4071	1.552	27.043	7	2	Median	8366900000	3966900000	4400000000	1169500000	437960000	731500000	2169600000	1133100000	1036500000	3019600000	1448600000	1571000000	2008200000	947190000	1061000000	17169	773	16266	104284;104285;104286;104287;104288;104289;104290;104291;104292;104293;104294;104295;104296;104297;104298;104299;104300;104301;104302;104303;104304;104305;104306;104307;104308;104309;104310;104311;104312;104313;104314;104315;104316;104317	140717;140718;140719;140720;140721;140722;140723;140724;140725;140726;140727;140728;140729;140730;140731;140732;140733;140734;140735;140736;140737;140738;140739;140740;140741;140742;140743;140744;140745;140746;140747;140748;140749;140750;140751;140752;140753;140754;140755;140756;140757;140758;140759;140760;140761;140762;140763;140764	140762			48	
FVVDLSDQVAPTDIEEGMR	0	Unmodified	2120.0096	0.0095849934	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	3	1	90.573	90.172	2;3	1.3926E-138	82094	160511_QHF_FH_JSI12i_1	293.25	270.72			1.0368	1.0314	10.802	6	3	Median	1.485	1.2112	NaN	1	1	Median	0.80705	0.96992	NaN	1	0	Median	1.0924	1.0535	12.02	3	2	Median	0.98402	1.0098	NaN	1	0	Median	481370000	237840000	243520000	21540000	9004100	12536000	126710000	71040000	55672000	221320000	100850000	120470000	111790000	56955000	54838000	17170	1449	16267	104318;104319;104320;104321;104322;104323;104324	140765;140766;140767;140768;140769;140770;140771;140772;140773;140774;140775	140770			11	
FVVDVDK	1	Unmodified	820.43307	0.43306943	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	40.799	40.016	2	0.014343	35828	160511_QHF_FH_JSI10i_1	67.032	50.105			1.2294	1.4909	35.404	5	4	Median	1.2065	0.98465	NaN	1	0	Median	1.2294	1.4909	NaN	1	1	Median	2.3947	2.3185	NaN	1	1	Median	1.3712	1.4834	36.651	2	2	Median	1040000000	495320000	544700000	131180000	47719000	83460000	287280000	170370000	116910000	281150000	114070000	167090000	340420000	163170000	177250000	17171	1984	16268	104325;104326;104327;104328;104329	140776;140777;140778;140779;140780;140781	140779			6	
FVVEKAEQQK	2	Acetyl (K)	1246.6558	0.65575216	1424	P35232	PHB	Prohibitin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.4						1	4				2	1	2	45.622	35.695	2	0.0012232	20623	160513_QHF_FH_JSI12Kac_4	87.913	67.584			26.154	27.955	236.11	5	5	Median	NaN	NaN	NaN	0	0	Median	3.2661	3.8744	318.21	2	2	Median	0.67653	0.66166	NaN	1	1	Median	35.884	38.013	43.462	2	2	Median	18097000	6994400	11103000	0	0	0	7699200	2903500	4795700	6099700	4025800	2073900	4298100	65112	4233000	17172	1424	16269	104330;104331;104332;104333;104334	140782;140783;140784;140785;140786	140786	1385		5	
FVVGSHVR	0	Unmodified	899.49774	0.49773538	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	17.869	17.132	2;3	9.1874E-05	14091	160511_QHF_FH_JSI10i_3	130.77	104.66			0.80258	0.85306	10.303	6	1	Median	1.1481	0.94258	0.18055	2	0	Median	0.7371	0.84519	3.9072	2	0	Median	0.75816	0.71504	NaN	1	1	Median	0.83698	0.83754	NaN	1	0	Median	1189300000	608390000	580940000	426870000	182130000	244740000	469750000	279330000	190410000	199980000	98085000	101890000	92735000	48842000	43892000	17173	1674	16270	104335;104336;104337;104338;104339;104340	140787;140788;140789;140790;140791;140792;140793;140794;140795;140796	140789			10	
FVVGYALDYNEYFR	0	Unmodified	1754.8304	0.83042206	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	3	2	1	2	93.061	89.932	2	4.9093E-52	84367	160511_QHF_FH_JSI11i_2	219.03	209.38			0.98529	1.0063	30.955	8	5	Median	1.1562	1.0455	25.317	3	3	Median	0.78736	0.95323	0.67378	2	1	Median	0.95966	0.96851	NaN	1	0	Median	1.4356	1.5764	46.073	2	1	Median	833750000	392030000	441720000	279360000	117170000	162180000	303610000	169660000	133950000	113330000	62768000	50562000	137450000	42424000	95021000	17174	772	16271	104341;104342;104343;104344;104345;104346;104347;104348	140797;140798;140799;140800;140801;140802;140803;140804;140805;140806;140807;140808;140809	140802			13	
FVVIHDR	0	Unmodified	884.48684	0.48683634	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.407	20.411	3	0.005627	17177	160511_QHF_FH_JSI11i_3	54.157	33.637			1.8673	1.8807	11.27	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8395	1.7367	NaN	1	1	Median	1.8956	2.0367	NaN	1	1	Median	57236000	24510000	32726000	0	0	0	0	0	0	37541000	15531000	22009000	19695000	8978400	10717000	17175	4900	16272	104349;104350	140810;140811	140810			2	
FVVLETGGEAGITR	0	Unmodified	1447.7671	0.76709352	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.461	60.95	2	0.0025325	53001	160511_QHF_FH_JSI11i_2	58.172	44.035			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17176	3250	16273	104351	140812	140812			1	
FVVMVTPEDLK	1	Unmodified	1276.6737	0.67371041	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	78.028	77.305	2	1.3401E-05	66887	160511_QHF_FH_JSI12i_2	107.15	87.883			1.0467	1.0293	30.856	4	4	Median	NaN	NaN	NaN	0	0	Median	1.4467	1.7387	NaN	1	1	Median	1.0467	1.0293	7.8313	2	2	Median	0.74885	0.85669	NaN	1	1	Median	132570000	73328000	59244000	0	0	0	26520000	12043000	14477000	70646000	41186000	29460000	35406000	20099000	15306000	17177	2348	16274	104352;104353;104354;104355	140813;140814;140815;140816	140814			4	
FVVPKPR	1	Acetyl (K)	883.52797	0.52797287	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.351	46.624	2	0.019178	25197	160513_QHF_FH_JSI11Kac_6	77.496	67.746			0.26048	0.26163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26048	0.26163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35765000	28255000	7509600	0	0	0	0	0	0	35765000	28255000	7509600	0	0	0	17178	2146	16275	104356	140817	140817	2245		1	
FVVQNVSAQK	1	Unmodified	1118.6084	0.60840804	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		2	4	5	4	36.688	31.978	2	4.3752E-19	26998	160511_QHF_FH_JSI12i_2	177.36	140.34			1.0541	1.1353	24.098	14	2	Median	1.1865	0.99855	18.267	2	0	Median	1.0014	1.1926	28.074	4	1	Median	0.98863	0.95769	22.128	4	1	Median	1.1884	1.2796	9.9142	4	0	Median	2441500000	1271600000	1169900000	526910000	297110000	229790000	628370000	350860000	277510000	732140000	371670000	360470000	554090000	251960000	302120000	17179	3852	16276	104357;104358;104359;104360;104361;104362;104363;104364;104365;104366;104367;104368;104369;104370;104371	140818;140819;140820;140821;140822;140823;140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834;140835;140836	140821			17	
FVVTGSKDETIHIYDMK	2	Unmodified	1981.9819	0.98191368	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	59.747	59.478	3	0.0049004	51223	160511_QHF_FH_JSI12i_3	49.343	36.305			1.8624	1.8464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8624	1.8464	NaN	1	1	Median	27847000	6748500	21098000	0	0	0	0	0	0	0	0	0	27847000	6748500	21098000	17180	5070	16277	104372	140837	140837			1	
FVVVCGDGEYIIYTAMALR	0	Unmodified	2176.0697	0.06968283	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		87.026	87.026	3	0.034911	77595	160511_QHF_FH_JSI11i_3	19.553	1.0155			0.10225	0.096064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10225	0.096064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45928000	40280000	5648400	0	0	0	0	0	0	45928000	40280000	5648400	0	0	0	17181	1438	16278	104373	140838	140838			1	
FVVYNVYMAGR	0	Unmodified	1317.654	0.65397802	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.78			1					1	4	2	2	1	1	73.868	66.799	2	1.6783E-14	34685	160513_QHF_FH_JSI12Kac_6	149.65	119.09			1.184	1.1385	15.104	5	0	Median	1.4981	1.2585	NaN	1	0	Median	1.0396	1.2285	22.226	2	0	Median	1.184	1.1385	NaN	1	0	Median	0.91407	0.9804	NaN	1	0	Median	1227100000	603470000	623630000	208790000	79920000	128870000	618760000	343800000	274950000	260490000	115740000	144750000	139070000	64003000	75062000	17182	4164	16279	104374;104375;104376;104377;104378;104379	140839;140840;140841;140842;140843;140844;140845;140846;140847	140845			9	
FVVYNVYMAGR	0	Oxidation (M)	1333.6489	0.64889264	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3	1	2	1	1	68.345	58.876	2	1.6956E-07	32368	160513_QHF_FH_JSI10Kac_6	114.89	101.54			1.0372	1.1575	7.4797	4	2	Linear	1.3765	1.1507	NaN	1	1	Median	0.95187	1.1261	NaN	1	0	Median	1.1856	1.1643	NaN	1	0	Median	1.2607	1.3286	NaN	1	1	Median	200020000	96070000	103950000	10457000	3172100	7284500	78605000	42964000	35641000	43166000	17099000	26068000	67794000	32835000	34959000	17183	4164	16279	104380;104381;104382;104383;104384	140848;140849;140850;140851;140852;140853	140852		2404	6	
FVWGPQDK	1	Unmodified	975.48142	0.48141661	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	43.023	42.095	2	0.0051081	36156	160511_QHF_FH_JSI12i_2	64.567	47.64			0.76193	0.79687	34.899	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62081	0.62261	NaN	1	0	Median	0.93515	1.0199	NaN	1	1	Median	211430000	118000000	93427000	0	0	0	0	0	0	130980000	75890000	55086000	80453000	42112000	38341000	17184	5166	16280	104385;104386;104387	140854;140855;140856	140855			3	
FVWNGHLLR	0	Unmodified	1140.6192	0.61924749	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3		2	1	1	65.828	58.595	3	0.00047318	32013	160513_QHF_FH_JSI10Kac_6	76.827	67.964			0.61136	0.66217	27.728	4	2	Median	NaN	NaN	NaN	0	0	Median	0.68385	0.81152	11.787	2	0	Median	0.59888	0.58728	NaN	1	1	Median	0.44468	0.46794	NaN	1	1	Median	61202000	36985000	24216000	0	0	0	49201000	29136000	20066000	5058000	2870800	2187200	6942500	4979000	1963500	17185	4991	16281	104388;104389;104390;104391	140857;140858;140859;140860	140860			4	
FVYTCNECKHHVETR	1	Acetyl (K)	2020.8884	0.88836442	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	34.457	25.602	4	7.9696E-05	14464	160513_QHF_FH_JSI10Kac_6	87.566	80.838			1.2058	1.2859	121.37	5	1	Median	NaN	NaN	NaN	0	0	Median	3.2193	3.8093	208.49	2	1	Median	1.054	1.0497	NaN	1	0	Median	1.2605	1.3607	7.9978	2	0	Median	49093000	22964000	26129000	0	0	0	31255000	14026000	17229000	4884800	2819200	2065600	12954000	6119700	6833900	17186	2285;3886	16282	104392;104393;104394;104395;104396	140861;140862;140863;140864	140863	2389		3	
FVYTPAMESVCGYFHR	0	Unmodified	1962.8757	0.87567447	781	P01033	TIMP1	Metalloproteinase inhibitor 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.218	78.218	3	6.6518E-06	69853	160511_QHF_FH_JSI11i_3	83.633	78.205			1.8925	1.7196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8925	1.7196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33015000	9176500	23838000	0	0	0	0	0	0	33015000	9176500	23838000	0	0	0	17187	781	16283	104397	140865	140865			1	
FVYVWDTTSR	0	Unmodified	1272.6139	0.61388734	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	1	1	2	1	67.923	62.106	2	9.0467E-06	32916	160513_QHF_FH_JSI9Kac_6	107.57	99.354			0.72857	0.88078	41.025	5	3	Median	1.3647	1.1849	NaN	1	0	Median	0.72857	0.88078	NaN	1	1	Median	0.4947	0.48331	2.9585	2	2	Median	0.87629	0.94085	NaN	1	0	Median	200430000	110710000	89722000	34783000	15446000	19336000	55709000	30191000	25518000	92081000	55168000	36913000	17862000	9907200	7955000	17188	4029	16284	104398;104399;104400;104401;104402	140866;140867;140868;140869;140870;140871;140872	140870			7	
FVYVWDTTSRR	0	Unmodified	1428.715	0.71499837	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			59.249	50.809	3	0.052611	27984	160513_QHF_FH_JSI10Kac_6	14.687	9.5914			1.0147	1.2094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0147	1.2094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17402000	7189800	10213000	0	0	0	17402000	7189800	10213000	0	0	0	0	0	0	17189	4029	16285	104403	140873	140873			1	
FWAIQTSALILR	0	Unmodified	1417.8082	0.80817048	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		88.044	80.516	2	0.0026034	44349	160513_QHF_FH_JSI11Kac_6	67.726	57.772			0.68901	0.7346	27.23	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50909	0.60594	NaN	1	1	Median	0.93252	0.89058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	336300000	227440000	108870000	0	0	0	208560000	148510000	60053000	127740000	78931000	48814000	0	0	0	17190	3103	16286	104404;104405	140874;140875	140874			2	
FWAYAFVLSK	1	Unmodified	1230.6437	0.64373091	4734	Q9H5J4	ELOVL6	Elongation of very long chain fatty acids protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	87.63	79.467	2	7.1736E-05	43928	160513_QHF_FH_JSI11Kac_6	96.331	39.284			1.5322	1.4097	47.858	3	2	Median	NaN	NaN	NaN	0	0	Median	0.73072	0.85823	NaN	1	1	Median	1.5322	1.4097	NaN	1	1	Median	2.0967	2.2346	NaN	1	0	Median	223120000	97402000	125710000	0	0	0	118670000	56706000	61964000	59976000	25748000	34228000	44470000	14949000	29521000	17191	4734	16287	104406;104407;104408;104409;104410	140876;140877;140878;140879;140880	140877			5	
FWAYEQYK	1	Unmodified	1133.5182	0.51819605	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	4	1	1	53.507	47.635	2	0.015719	25135	160513_QHF_FH_JSI9Kac_6	68.915	55.336			1.3197	1.1247	80.874	5	4	Median	1.3197	1.1247	NaN	1	1	Median	2.9115	3.5731	107.61	3	3	Plateau	1.1322	1.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	347910000	102430000	245480000	8031500	3902400	4129000	330140000	93967000	236170000	9735000	4557100	5177900	0	0	0	17192	3071	16288	104411;104412;104413;104414;104415;104416;104417	140881;140882;140883;140884;140885;140886;140887;140888;140889	140886			9	
FWAYEQYKK	2	Acetyl (K)	1303.6237	0.62372375	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.826	55.16	2	0.017796	29881	160513_QHF_FH_JSI11Kac_6	68.224	37.15			1.2106	1.1799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2106	1.1799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14152000	7236400	6915600	0	0	0	0	0	0	14152000	7236400	6915600	0	0	0	17193	3071	16289	104418	140890	140890	2760		1	
FWAYEQYKK	2	Unmodified	1261.6132	0.61315906	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	6.25	5.63			3						1		1	1	2	40.239	38.005	2;3	0.000863	32128	160511_QHF_FH_JSI12i_3	53.683	38.311			0.32774	0.34545	192.65	4	2	Median	NaN	NaN	NaN	0	0	Median	0.46392	0.55655	NaN	1	1	Median	0.23154	0.21441	NaN	1	0	Median	0.14821	0.14913	315.82	2	1	Median	827550000	703030000	124530000	0	0	0	7346500	4341800	3004700	14705000	11241000	3464200	805500000	687440000	118060000	17194	3071	16289	104419;104420;104421;104422	140891;140892;140893	140891			3	
FWDASGVALRPLYK	1	Unmodified	1621.8617	0.86166261	2653	Q15334	LLGL1	Lethal(2) giant larvae protein homolog 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	73.71	73.127	3	0.0025137	65084	160511_QHF_FH_JSI11i_3	60.345	51.295			0.17008	0.16697	61.452	3	3	Plateau	0.61212	0.49277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1669	0.1577	NaN	1	1	Median	0.18453	0.18702	NaN	1	1	Median	665720000	575340000	90380000	31029000	17795000	13234000	0	0	0	269390000	230070000	39322000	365300000	327480000	37823000	17195	2653	16290	104423;104424;104425	140894;140895;140896	140894			3	
FWDFAGMDASFK	1	Unmodified	1420.6122	0.61217279	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.104	90.587	2	0.0083443	79606	160511_QHF_FH_JSI11i_2	50.09	41.508			0.82415	0.81461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82415	0.81461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44201000	20196000	24005000	0	0	0	0	0	0	44201000	20196000	24005000	0	0	0	17196	5063	16291	104426	140897	140897			1	
FWDLSTETPHFTCK	1	Unmodified	1767.7927	0.79265635	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.689	69.09	3	0.00080098	60456	160511_QHF_FH_JSI11i_2	64.04	57			1.1019	1.0796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1019	1.0796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64854000	32309000	32545000	0	0	0	0	0	0	64854000	32309000	32545000	0	0	0	17197	5054	16292	104427	140898	140898			1	
FWENYILIMETLEGNQIHVIKPVLPK	2	Unmodified	3123.6831	0.68309989	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	16	0									2	1			1	96.378	87.124	4	4.0489E-19	49600	160513_QHF_FH_JSI9Kac_6	109.68	103.78			1.2871	1.2298	14.526	2	1	Median	1.2754	1.1098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2989	1.3629	NaN	1	1	Median	123730000	69117000	54613000	75869000	36524000	39345000	0	0	0	0	0	0	47861000	32593000	15268000	17198	2397	16293	104428;104429	140899;140900;140901	140899			3	
FWEQSVR	0	Unmodified	950.46102	0.46101552	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	27.653	26.751	2	0.061473	22408	160511_QHF_FH_JSI12i_2	40.686	23.124			0.85387	0.83307	13.754	4	0	Median	0.98921	0.84079	NaN	1	0	Median	0.64222	0.79573	NaN	1	0	Median	1.0364	1.0761	NaN	1	0	Median	0.73705	0.82542	NaN	1	0	Median	291770000	157000000	134770000	51885000	30705000	21180000	78272000	45500000	32772000	91509000	44608000	46901000	70103000	36190000	33913000	17199	802	16294	104430;104431;104432;104433	140902	140902			1	
FWESNSAAHK	1	Unmodified	1175.536	0.53597137	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	13.004	13.059	2;3	0.00027881	10071	160511_QHF_FH_JSI12i_3	79.474	58.174			0.65406	0.61811	34.877	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59508	0.55393	NaN	1	0	Median	0.83045	0.81042	38.309	2	0	Median	215790000	115480000	100310000	0	0	0	0	0	0	101900000	58479000	43418000	113890000	56998000	56896000	17200	2904	16295	104434;104435;104436	140903;140904	140904			2	
FWESPETVSQLDSVR	0	Unmodified	1778.8475	0.84752869	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	70.791	69.958	2	1.0647E-06	61208	160511_QHF_FH_JSI11i_2	129.84	115.68			1.2781	1.2568	34.685	9	9	Median	1.3894	1.1862	39.599	2	2	Median	0.91346	1.1002	47.455	2	2	Median	1.3101	1.2568	30.19	3	3	Median	1.1027	1.1947	61.655	2	2	Median	461230000	238970000	222260000	96983000	43171000	53811000	103210000	51118000	52093000	178800000	105910000	72891000	82236000	38771000	43465000	17201	3907	16296	104437;104438;104439;104440;104441;104442;104443;104444;104445	140905;140906;140907;140908;140909;140910;140911;140912;140913;140914;140915	140911			11	
FWEVISDEHGIDPAGGYVGDSALQLER	0	Unmodified	2959.3988	0.39881578	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	94.755	94.415	3	1.8969E-34	83031	160511_QHF_FH_JSI11i_2	155.95	150.17			1.0804	1.1155	44.919	9	4	Median	1.4339	1.2191	9.6619	2	0	Median	1.727	2.0827	94.053	2	1	Median	1.0037	1.0262	11.79	2	2	Median	1.0257	1.1138	23.434	3	1	Median	407660000	201420000	206240000	46861000	19190000	27671000	82353000	34899000	47454000	154140000	79078000	75062000	124310000	68256000	56049000	17202	4440	16297	104446;104447;104448;104449;104450;104451;104452;104453;104454	140916;140917;140918;140919;140920;140921;140922;140923;140924;140925;140926;140927;140928;140929;140930;140931;140932	140925			17	
FWEVISDEHGIDPTGTYHGDSDLQLDR	0	Unmodified	3101.4003	0.40027234	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.48	2.04		112	25						3	20	25	51	44	89.271	88.545	3;4	3.2324E-51	69136	160511_QHF_FH_JSI12i_3	197.36	59.475			1.0655	1.1345	19.608	129	37	Plateau	1.3028	1.1253	27.764	18	4	Median	0.83798	1.0146	24.286	23	9	Median	1.1826	1.1688	14.037	46	15	Median	1.7517	1.8351	14.212	42	9	Linear	7575400000	3658000000	3917400000	581660000	254780000	326880000	1553100000	881710000	671440000	2662400000	1209500000	1452900000	2778200000	1312000000	1466200000	17203	872	16298	104455;104456;104457;104458;104459;104460;104461;104462;104463;104464;104465;104466;104467;104468;104469;104470;104471;104472;104473;104474;104475;104476;104477;104478;104479;104480;104481;104482;104483;104484;104485;104486;104487;104488;104489;104490;104491;104492;104493;104494;104495;104496;104497;104498;104499;104500;104501;104502;104503;104504;104505;104506;104507;104508;104509;104510;104511;104512;104513;104514;104515;104516;104517;104518;104519;104520;104521;104522;104523;104524;104525;104526;104527;104528;104529;104530;104531;104532;104533;104534;104535;104536;104537;104538;104539;104540;104541;104542;104543;104544;104545;104546;104547;104548;104549;104550;104551;104552;104553;104554;104555;104556;104557;104558;104559;104560;104561;104562;104563;104564;104565;104566;104567;104568;104569;104570;104571;104572;104573;104574;104575;104576;104577;104578;104579;104580;104581;104582;104583;104584;104585;104586;104587;104588;104589;104590;104591;104592;104593;104594	140933;140934;140935;140936;140937;140938;140939;140940;140941;140942;140943;140944;140945;140946;140947;140948;140949;140950;140951;140952;140953;140954;140955;140956;140957;140958;140959;140960;140961;140962;140963;140964;140965;140966;140967;140968;140969;140970;140971;140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985;140986;140987;140988;140989;140990;140991;140992;140993;140994;140995;140996;140997;140998;140999;141000;141001;141002;141003;141004;141005;141006;141007;141008;141009;141010;141011;141012;141013;141014;141015;141016;141017;141018;141019;141020;141021;141022;141023;141024;141025;141026;141027;141028;141029;141030;141031;141032;141033;141034;141035;141036;141037;141038;141039;141040;141041;141042;141043;141044;141045;141046;141047;141048;141049;141050;141051;141052;141053;141054;141055;141056;141057;141058;141059;141060;141061;141062;141063;141064;141065;141066;141067;141068;141069;141070;141071;141072;141073;141074;141075;141076;141077;141078;141079	141064			132	
FWEVISDEHGIDPTGTYHGDSDLQLER	0	Unmodified	3115.4159	0.4159224	2075;811	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.28	0.447		21	8							1	5	12	11	84.923	84.377	3;4	3.0325E-49	69027	160511_QHF_FH_JSI12i_3	184.4	183.02			1.0692	1.1109	20.941	29	15	Median	1.3972	1.1809	NaN	1	0	Median	0.8159	1.0101	9.4056	5	3	Median	1.2007	1.1682	26.467	12	9	Median	1.0226	1.0536	19.03	11	3	Median	1772100000	826720000	945400000	29295000	12292000	17003000	238640000	134580000	104060000	522820000	227450000	295370000	981360000	452400000	528960000	17204	2075;811	16299	104595;104596;104597;104598;104599;104600;104601;104602;104603;104604;104605;104606;104607;104608;104609;104610;104611;104612;104613;104614;104615;104616;104617;104618;104619;104620;104621;104622;104623	141080;141081;141082;141083;141084;141085;141086;141087;141088;141089;141090;141091;141092;141093;141094;141095;141096;141097;141098;141099;141100;141101;141102;141103;141104;141105;141106;141107;141108;141109;141110;141111;141112;141113;141114	141106			35	
FWFAHNVLFNVSNR	0	Unmodified	1749.874	0.87395863	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	4	1	2	83.143	75.609	2;3	5.6279E-44	42402	160513_QHF_FH_JSI10Kac_6	220.5	194.56			0.67083	0.67587	92.927	9	7	Median	1.6309	1.4188	104.87	2	2	Median	0.69063	0.82004	118.59	4	4	Median	0.6468	0.61384	NaN	1	0	Median	0.4488	0.47943	54.923	2	1	Median	2782300000	1443900000	1338500000	530660000	194990000	335670000	1981700000	1091500000	890210000	131410000	75431000	55976000	138570000	81961000	56608000	17205	3921	16300	104624;104625;104626;104627;104628;104629;104630;104631;104632;104633	141115;141116;141117;141118;141119;141120;141121;141122;141123;141124;141125	141123			10	
FWGTSGVESVIGSVHTWLAEAINALQDNRDTLTAK	1	Unmodified	3785.9013	0.90130218	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.34	95.624	4	6.1989E-193	56453	160513_QHF_FH_JSI10Kac_6	280.94	270.01			0.90964	1.0872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90964	1.0872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	316620000	152350000	164270000	0	0	0	316620000	152350000	164270000	0	0	0	0	0	0	17206	1419	16301	104634	141126;141127	141126			2	
FWIHMQDAVYSLQQFGFSEK	1	Oxidation (M)	2476.1522	0.15216691	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				85.927	77.315	3	0.015719	42635	160513_QHF_FH_JSI9Kac_6	38.942	32.342			1.2921	1.1192	NaN	1	0	Median	1.2921	1.1192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46649000	22142000	24507000	46649000	22142000	24507000	0	0	0	0	0	0	0	0	0	17207	4153	16302	104635	141128	141128		2400	0	
FWLMALTSLLFLTTCM	0	Oxidation (M)	1962.9657	0.96573503	5781				yes	yes	0	0	1	0		By MS/MS	By MS/MS		16	0									2		1	1		69.944	61.374	3	0.015	33685	160513_QHF_FH_JSI10Kac_6	45.115	19.249	+		0.062548	0.066005	28.6	2	2	Median	NaN	NaN	NaN	0	0	Median	0.045715	0.05392	NaN	1	1	Median	0.085579	0.080798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3014300000	2896000000	118290000	0	0	0	2793900000	2684900000	108980000	220390000	211070000	9315000	0	0	0	17208	5781	16303	104636;104637	141129;141130	141130		2746	2	
FWPAIDDGLRR	0	Unmodified	1344.6939	0.693869	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.751	62.25	3	0.042173	51224	160511_QHF_FH_JSI9i_3	31.431	14.405			1.5339	1.2613	NaN	1	0	Median	1.5339	1.2613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22400000	11050000	11350000	22400000	11050000	11350000	0	0	0	0	0	0	0	0	0	17209	3401	16304	104638	141131	141131			0	
FWPKTHSPK	2	Acetyl (K)	1168.6029	0.60292873	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.261	29.747	3	0.029819	16416	160513_QHF_FH_JSI11Kac_6	39.917	22.481			0.02385	0.024074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.02385	0.024074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4718400	4614100	104290	0	0	0	0	0	0	4718400	4614100	104290	0	0	0	17210	2570	16305	104639	141132	141132			1	
FWQTYSSAEEVLQK	1	Unmodified	1714.8203	0.82025131	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	68.99	68.074	2	3.4451E-06	60423	160511_QHF_FH_JSI10i_2	131.43	84.542			2.5217	2.6664	51.877	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8255	1.8476	NaN	1	1	Median	3.4836	3.848	NaN	1	1	Median	88749000	65280000	23468000	0	0	0	19955000	19955000	0	44308000	30081000	14227000	24486000	15244000	9241300	17211	5	16306	104640;104641;104642;104643;104644	141133;141134;141135;141136;141137	141137			5	
FWSFFLR	0	Unmodified	1001.5123	0.51232281	3132	Q6PKG0	LARP1	La-related protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	87.492	78.985	2	1.4809E-14	42146	160513_QHF_FH_JSI12Kac_6	172.39	143.88			1.0989	0.94463	94.281	5	2	Median	1.0989	0.94463	NaN	1	0	Median	0.70291	0.78586	NaN	1	0	Median	1.2329	1.161	NaN	1	0	Median	1.0079	1.0528	186.2	2	2	Median	9251600000	4822800000	4428800000	1870200000	865960000	1004300000	4764400000	2583100000	2181300000	1000000000	563020000	436990000	1617000000	810740000	806270000	17212	3132	16307	104645;104646;104647;104648;104649	141138;141139;141140;141141;141142;141143;141144;141145	141143			8	
FWSVDDTQVHTEYSSLR	0	Unmodified	2068.949	0.94903365	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	6.02		9	5						5	4	5	7	3	64.422	61.792	2;3	7.6006E-71	33756	160513_QHF_FH_JSI10Kac_6	214.63	208.15			0.98804	1.1023	17.618	16	2	Median	1.4618	1.2348	12.841	2	0	Median	0.90209	1.0823	13.361	5	0	Median	1.0804	1.0333	18.561	6	2	Median	0.88008	0.96829	26.146	3	0	Median	4465800000	2120000000	2345900000	195190000	84626000	110570000	1431200000	777610000	653560000	1850500000	838780000	1011700000	989020000	418960000	570060000	17213	1395	16308	104650;104651;104652;104653;104654;104655;104656;104657;104658;104659;104660;104661;104662;104663;104664;104665;104666;104667;104668	141146;141147;141148;141149;141150;141151;141152;141153;141154;141155;141156;141157;141158;141159;141160;141161;141162;141163;141164;141165;141166;141167	141164			22	
FWVLAAHPNLNLFAAGHDGGMIVFK	1	Oxidation (M)	2740.3948	0.39479721	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	91.095	81.923	4	3.3564E-10	45682	160513_QHF_FH_JSI9Kac_6	134.66	124.11			0.59975	0.57601	32.851	3	3	Median	1.0795	0.92339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59975	0.57601	NaN	1	1	Median	0.47345	0.49088	NaN	1	1	Median	378700000	235100000	143600000	152080000	60427000	91652000	0	0	0	107530000	79710000	27817000	119100000	94965000	24131000	17214	1805	16309	104669;104670;104671	141168;141169;141170	141169		1493	3	
FWVLAAHPNLNLFAAGHDGGMIVFK	1	Unmodified	2724.3999	0.39988259	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	3	1		92.981	85.9	3;4	1.6699E-93	47479	160513_QHF_FH_JSI9Kac_6	217.94	182.93			0.66173	0.78149	63.533	5	3	Median	1.2498	1.0815	NaN	1	0	Median	0.66173	0.78149	81.557	3	2	Median	0.55005	0.52771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2620400000	1662100000	958290000	360700000	169690000	191010000	1693200000	1175800000	517430000	566440000	316590000	249850000	0	0	0	17215	1805	16309	104672;104673;104674;104675;104676	141171;141172;141173;141174;141175;141176	141172			6	
FWVNILK	1	Unmodified	918.53272	0.5327239	236;5622	O15031;O60486;Q9Y4D7	PLXNB2;PLXNC1;PLXND1	Plexin-B2;Plexin-C1;Plexin-D1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	80.275	75.316	2	0.0025238	39649	160513_QHF_FH_JSI11Kac_6	102.98	63.437			1.0112	1.1066	48.784	9	3	Median	1.3716	1.1377	82.218	3	2	Median	0.85994	1.0076	20.414	2	0	Median	1.0252	0.98518	16.441	2	0	Median	0.82565	0.84805	60.312	2	1	Median	728940000	357440000	371500000	178130000	94008000	84127000	173790000	106610000	67187000	176950000	71298000	105650000	200070000	85532000	114540000	17216	236;5622	16310	104677;104678;104679;104680;104681;104682;104683;104684;104685	141177;141178;141179;141180;141181;141182;141183;141184;141185;141186;141187;141188;141189	141180			13	
FWVVDQTHFYLGSANMDWR	0	Unmodified	2371.0844	0.084421692	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.067	83.346	3	0.0010404	47224	160513_QHF_FH_JSI10Kac_6	57.009	52.142			0.82193	0.96199	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82193	0.96199	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69541000	38897000	30645000	0	0	0	69541000	38897000	30645000	0	0	0	0	0	0	17217	3401	16311	104686	141190	141190			1	
FWYFVSQLK	1	Unmodified	1216.6281	0.62808085	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.15	6.86		7	3						10	6	5	5	4	87.515	83.323	1;2;3	2.2797E-16	41960	160513_QHF_FH_JSI9Kac_6	163.77	126.58			0.31952	0.28303	283.46	18	17	Median	0.13854	0.11086	307.35	5	5	Median	0.16431	0.18384	295.61	4	3	Median	0.96789	0.9811	267.22	5	5	Median	1.0453	1.1075	358.14	4	4	Median	79441000000	45644000000	33797000000	19561000000	10575000000	8986600000	22507000000	13171000000	9335800000	22570000000	13581000000	8989000000	14803000000	8316600000	6486000000	17218	2190	16312	104687;104688;104689;104690;104691;104692;104693;104694;104695;104696;104697;104698;104699;104700;104701;104702;104703;104704;104705;104706	141191;141192;141193;141194;141195;141196;141197;141198;141199;141200;141201;141202;141203;141204;141205;141206;141207;141208;141209;141210;141211;141212;141213;141214;141215;141216;141217;141218;141219	141210			29	
FWYFVSQLKK	2	Unmodified	1344.723	0.72304386	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			77.663	71.597	3	0.017394	39106	160513_QHF_FH_JSI10Kac_6	41.689	30.454			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46444000	46444000	0	0	0	0	46444000	46444000	0	0	0	0	0	0	0	17219	2190	16313	104707	141220	141220			1	
FYAAEIASALGYLHSLNIVYR	0	Unmodified	2370.2372	0.23721716	96	O00141	SGK1	Serine/threonine-protein kinase Sgk1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	96.94	88.521	3	8.6656E-60	50108	160513_QHF_FH_JSI9Kac_6	195.39	152.27			1.012	1.0478	19.775	4	1	Median	1.4171	1.2136	NaN	1	0	Median	1.0866	1.2908	NaN	1	0	Median	0.94253	0.90454	NaN	1	1	Median	0.83738	0.87894	NaN	1	0	Median	612940000	347360000	265580000	104640000	56699000	47945000	162750000	82728000	80019000	123590000	69189000	54406000	221950000	138740000	83213000	17220	96	16314	104708;104709;104710;104711	141221;141222;141223;141224	141222			4	
FYAGGSER	0	Unmodified	885.39808	0.39808091	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	9.9404	9.4735	2	0.0033731	7077	160511_QHF_FH_JSI12i_2	73.039	55.477			0.78559	0.86827	14.095	4	0	Median	1.1985	1.0218	NaN	1	0	Median	0.65524	0.80811	NaN	1	0	Median	0.7328	0.74653	NaN	1	0	Median	0.84217	0.93291	NaN	1	0	Median	387880000	214160000	173710000	80912000	34903000	46010000	77583000	43218000	34364000	125970000	76866000	49106000	103410000	59176000	44231000	17221	5453	16315	104712;104713;104714;104715	141225;141226;141227;141228;141229	141226			5	
FYALDPSFPR	0	Unmodified	1211.5975	0.597509	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.432	69.635	2	0.00039751	61989	160511_QHF_FH_JSI10i_2	75.825	63.237			1.2773	1.5918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2773	1.5918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	388550000	134530000	254020000	0	0	0	388550000	134530000	254020000	0	0	0	0	0	0	17222	2282	16316	104716	141230	141230			1	
FYALSASFEPFSNK	1	Unmodified	1606.7668	0.76675917	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	6.06	8	8	8	2					8	6	10	10	8	85.284	82.815	2;3	1.5829E-155	75850	160511_QHF_FH_JSI11i_3	300.35	283.32			1.067	1.1095	19.261	32	6	Median	1.22	0.9931	11.497	6	0	Median	0.89469	1.0397	15.886	9	2	Median	1.1155	1.0851	24.41	9	3	Median	1.1261	1.2277	14.904	8	1	Median	19736000000	9200400000	10535000000	3607500000	1669000000	1938500000	5243100000	2721900000	2521200000	6359800000	2884000000	3475700000	4525200000	1925500000	2599700000	17223	1297	16317	104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730;104731;104732;104733;104734;104735;104736;104737;104738;104739;104740;104741;104742;104743;104744;104745;104746;104747;104748;104749;104750	141231;141232;141233;141234;141235;141236;141237;141238;141239;141240;141241;141242;141243;141244;141245;141246;141247;141248;141249;141250;141251;141252;141253;141254;141255;141256;141257;141258;141259;141260;141261;141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282;141283;141284;141285;141286;141287;141288;141289;141290;141291;141292;141293;141294;141295;141296;141297;141298;141299;141300;141301;141302;141303;141304;141305;141306;141307;141308;141309;141310;141311;141312;141313	141231			83	
FYASSGEHEK	1	Unmodified	1153.504	0.50400254	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.9411	7.5064	2	8.8759E-05	5196	160511_QHF_FH_JSI11i_2	85.676	71.519			1.1807	1.2488	28.871	4	0	Median	1.1039	0.93715	NaN	1	0	Median	1.0077	1.2335	NaN	1	0	Median	1.2628	1.2642	NaN	1	0	Median	1.6634	1.8892	NaN	1	0	Median	236340000	120230000	116120000	52147000	20614000	31533000	45182000	21994000	23189000	86520000	51851000	34669000	52495000	25767000	26728000	17224	5161	16318	104751;104752;104753;104754	141314;141315;141316	141315			3	
FYCDYCDTYLTHDSPSVR	0	Unmodified	2297.9358	0.93576812	925	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		56.596	56.089	3	0.0016009	48530	160511_QHF_FH_JSI11i_2	48.848	40.66			0.95827	0.96447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95827	0.96447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27170000	10666000	16504000	0	0	0	0	0	0	27170000	10666000	16504000	0	0	0	17225	925	16319	104755;104756	141317;141318	141318			2	
FYDDAIVSQK	1	Unmodified	1184.5714	0.57135383	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	1	2	41.29	38.997	2	5.2951E-11	35176	160511_QHF_FH_JSI11i_1	147.2	139.98			1.0903	1.0647	32.618	6	1	Median	1.1776	0.96357	NaN	1	0	Median	1.3129	1.5746	41.22	2	1	Median	0.95634	0.94431	NaN	1	0	Median	0.97659	1.0467	27.825	2	0	Median	1270800000	721610000	549170000	222080000	115280000	106800000	371640000	220070000	151570000	407830000	233270000	174550000	269220000	152980000	116240000	17226	552	16320	104757;104758;104759;104760;104761;104762	141319;141320;141321;141322;141323;141324;141325;141326;141327;141328	141319			10	
FYDLSSK	1	Unmodified	858.41233	0.41233399	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	27.523	26.529	2	0.030187	22360	160511_QHF_FH_JSI12i_2	54.205	38.766			0.69302	0.72678	67.234	4	1	Median	1.5994	1.4058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0157	1.007	NaN	1	0	Median	0.3679	0.40432	36.815	2	1	Median	502380000	247680000	254690000	130370000	54778000	75590000	0	0	0	205570000	92722000	112840000	166450000	100180000	66260000	17227	5441	16321	104763;104764;104765;104766	141329;141330	141329			2	
FYDLSSKYYQTIGNHASYYK	2	Acetyl (K)	2489.1539	0.15394104	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.202	69.888	3	1.1186E-85	38317	160513_QHF_FH_JSI11Kac_6	268.3	253.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27273000	27273000	0	0	0	0	0	0	0	27273000	27273000	0	0	0	0	17228	5441	16322	104767	141331	141331	3424;3425		1	
FYDSNTVK	1	Unmodified	972.45526	0.45526144	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	15.503	15.045	2	0.026752	12593	160511_QHF_FH_JSI10i_1	42.396	5.237			0.71567	0.83038	12.549	4	0	Linear	1.0023	0.81898	NaN	1	0	Median	0.60979	0.71222	NaN	1	0	Median	0.86628	0.84195	NaN	1	0	Median	0.9215	0.9673	NaN	1	0	Median	623230000	336680000	286540000	124750000	62062000	62686000	170000000	102800000	67205000	168570000	92339000	76228000	159910000	79485000	80422000	17229	2366	16323	104768;104769;104770;104771	141332	141332			1	
FYDSWESTVK	1	Unmodified	1260.5663	0.56626845	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	50.407	49.451	2	0.00012467	42537	160511_QHF_FH_JSI11i_2	84.213	68.331			1.0981	1.1551	32.229	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1052	1.3397	53.351	2	2	Median	1.0973	1.0987	NaN	1	0	Median	1.099	1.2143	NaN	1	0	Median	228560000	103060000	125500000	0	0	0	77979000	33278000	44701000	73318000	29913000	43405000	77264000	39867000	37397000	17230	4714	16324	104772;104773;104774;104775	141333;141334;141335;141336;141337	141334			5	
FYEAFSK	1	Unmodified	890.41742	0.41741937	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.35	4	9	7				1	1	3	5	7	9	4	35.252	32.75	1;2	0.0049729	28503	160511_QHF_FH_JSI11i_3	105.39	68.804			0.91253	0.97935	131.66	25	20	Median	1.1194	0.99108	148.08	5	4	Median	0.85398	1.0188	161.6	7	5	Median	0.63811	0.62984	116.33	9	8	Median	1.3489	1.4112	118.73	4	3	Median	65519000000	31626000000	33893000000	11329000000	5308500000	6020300000	18822000000	8014700000	10807000000	23317000000	11572000000	11745000000	12051000000	6730900000	5320200000	17231	898	16325	104776;104777;104778;104779;104780;104781;104782;104783;104784;104785;104786;104787;104788;104789;104790;104791;104792;104793;104794;104795;104796;104797;104798;104799;104800	141338;141339;141340;141341;141342;141343;141344;141345;141346;141347;141348;141349;141350;141351;141352;141353;141354;141355;141356;141357;141358;141359;141360;141361;141362;141363;141364;141365;141366;141367;141368;141369;141370;141371	141339			34	
FYEAFSKNLK	2	Acetyl (K)	1287.6499	0.6499385	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.699							2	6	7	3	5	5	2	67.594	57.668	2;3	5.9629E-07	28999	160513_QHF_FH_JSI10Kac_5	131.44	100.21			0.38961	0.41816	152.75	12	4	Median	0.96594	0.80021	NaN	1	0	Median	2.3064	2.7007	177.54	5	4	Median	0.28076	0.27239	10.805	4	0	Median	0.38961	0.41816	3.1198	2	0	Median	1202700000	864780000	337920000	36013000	18576000	17437000	166700000	72946000	93759000	891910000	697550000	194360000	108070000	75705000	32366000	17232	898	16326	104801;104802;104803;104804;104805;104806;104807;104808;104809;104810;104811;104812;104813;104814;104815	141372;141373;141374;141375;141376;141377;141378;141379;141380;141381;141382;141383;141384;141385;141386;141387;141388;141389;141390;141391;141392	141385	650;651		21	
FYEDNGQLDDAR	0	Unmodified	1441.611	0.61098681	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	29.725	29.183	2	0.00020646	26086	160511_QHF_FH_JSI12i_1	80.102	77.25			1.2053	1.1492	13.326	5	2	Median	1.3173	1.0606	NaN	1	0	Median	0.93868	1.1084	20.934	2	2	Median	1.2053	1.1492	NaN	1	0	Median	1.2777	1.3153	NaN	1	0	Median	219450000	103250000	116210000	40616000	18019000	22597000	85600000	41656000	43943000	38987000	17716000	21271000	54252000	25854000	28398000	17233	4863	16327	104816;104817;104818;104819;104820	141393;141394;141395;141396;141397;141398	141395			6	
FYEEVHDLER	0	Unmodified	1335.6095	0.60953025	4309;1852	P55209;Q99733	NAP1L1;NAP1L4	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.04		10	2					3	2	5	2	6	4	38.517	34.934	2;3	1.7083E-06	30782	160511_QHF_FH_JSI10i_2	103.34	92.241			0.77493	0.74513	67.866	17	12	Median	0.88112	0.74513	42.491	5	3	Median	0.5082	0.62156	8.8635	2	2	Median	0.66468	0.65673	101.03	6	5	Median	0.9255	1.0148	63.107	4	2	Median	3865000000	1971200000	1893700000	499930000	213690000	286240000	704510000	424390000	280120000	2044400000	1019600000	1024800000	616170000	313550000	302610000	17234	1852;4309	16328	104821;104822;104823;104824;104825;104826;104827;104828;104829;104830;104831;104832;104833;104834;104835;104836;104837	141399;141400;141401;141402;141403;141404;141405;141406;141407;141408;141409;141410;141411;141412;141413;141414;141415;141416;141417;141418;141419	141417			20	
FYEEVHDLERK	1	Unmodified	1463.7045	0.70449327	4309;1852	P55209;Q99733	NAP1L1;NAP1L4	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.35		17	9						6	3	7	8	14	32.642	30.328	2;3;4	1.5316E-06	25142	160511_QHF_FH_JSI12i_3	113.42	95.283			1.0462	1.16	76.78	32	19	Median	1.6174	1.3943	66.41	3	2	Median	1.0758	1.3019	36.589	7	3	Median	1.693	1.6866	73.696	8	6	Median	0.74918	0.84062	96.078	14	8	Median	3754900000	1750100000	2004800000	318210000	110020000	208190000	646190000	277430000	368760000	1259100000	556570000	702510000	1531400000	806030000	725370000	17235	1852;4309	16329	104838;104839;104840;104841;104842;104843;104844;104845;104846;104847;104848;104849;104850;104851;104852;104853;104854;104855;104856;104857;104858;104859;104860;104861;104862;104863;104864;104865;104866;104867;104868;104869	141420;141421;141422;141423;141424;141425;141426;141427;141428;141429;141430;141431;141432;141433;141434;141435;141436;141437;141438;141439;141440;141441;141442;141443;141444;141445;141446;141447;141448;141449;141450;141451;141452;141453;141454;141455;141456;141457;141458;141459;141460;141461;141462;141463	141455			42	
FYEFSQR	0	Unmodified	975.44503	0.4450311	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.109	29.194	2	0.0085662	25676	160511_QHF_FH_JSI10i_2	82.913	51.61			0.98049	0.9651	12.828	4	0	Median	1.0565	0.90761	NaN	1	0	Median	0.99115	1.2135	NaN	1	0	Median	0.96996	0.97373	NaN	1	0	Median	0.84808	0.95655	NaN	1	0	Median	975020000	475930000	499090000	136460000	58003000	78461000	224010000	103060000	120950000	349400000	169600000	179800000	265150000	145270000	119880000	17236	5015	16330	104870;104871;104872;104873	141464;141465;141466;141467;141468;141469;141470	141470			7	
FYEGTADEMCK	1	Unmodified	1349.5268	0.52678818	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.007	29.439	2	0.00036899	26401	160511_QHF_FH_JSI12i_1	88.496	82.232			1.2085	1.2342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2085	1.2342	NaN	1	1	Median	31722000	16907000	14815000	0	0	0	0	0	0	0	0	0	31722000	16907000	14815000	17237	2764	16331	104874	141471	141471			1	
FYEGTFNWESVK	1	Unmodified	1505.6827	0.68269519	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	71.074	70.061	2	0.0014912	61756	160511_QHF_FH_JSI9i_2	62.303	52.298			0.66407	0.64907	57.016	4	2	Median	0.54687	0.46814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80638	0.83721	NaN	1	0	Median	0.81933	0.89956	82.151	2	2	Median	95697000	60057000	35640000	20550000	13162000	7388400	0	0	0	36112000	25123000	10989000	39035000	21772000	17262000	17238	3515	16332	104875;104876;104877;104878	141472;141473;141474;141475;141476	141474			5	
FYEQFSK	1	Unmodified	947.43888	0.43888309	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.03	6	7	6			1	2	4	2	7	7	8	6	31.62	27.772	1;2	0.0033324	24261	160511_QHF_FH_JSI12i_3	105.2	58.537			0.86979	0.9226	60.856	28	11	Median	1.4658	1.2712	43.911	7	2	Median	0.74857	0.89999	54.395	7	3	Median	0.88838	0.86463	87.356	8	4	Median	0.86139	0.90595	49.678	6	2	Median	38241000000	18645000000	19596000000	5682800000	2410800000	3272000000	8898600000	4533400000	4365200000	13025000000	5435700000	7589800000	10634000000	6264700000	4369100000	17239	880	16333	104879;104880;104881;104882;104883;104884;104885;104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896;104897;104898;104899;104900;104901;104902;104903;104904;104905;104906	141477;141478;141479;141480;141481;141482;141483;141484;141485;141486;141487;141488;141489;141490;141491;141492;141493;141494;141495;141496;141497;141498;141499;141500;141501;141502;141503;141504;141505;141506;141507;141508;141509;141510;141511	141510			35	
FYEQFSKNIK	2	Acetyl (K)	1344.6714	0.67140222	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.599							1	5	2	1	1	3	3	62.724	52.195	2;3	4.9667E-08	28223	160513_QHF_FH_JSI11Kac_6	134.25	113.35			0.36881	0.40641	66.501	5	0	Median	0.89725	0.7642	NaN	1	0	Median	1.1707	1.4021	NaN	1	0	Median	0.31637	0.30481	7.8926	2	0	Median	0.36881	0.40641	NaN	1	0	Median	233910000	184720000	49188000	4748200	2275800	2472300	24442000	14245000	10197000	187420000	153450000	33971000	17291000	14745000	2546600	17240	880	16334	104907;104908;104909;104910;104911;104912;104913;104914	141512;141513;141514;141515;141516;141517;141518;141519;141520;141521;141522;141523	141513	606;607		12	
FYEQMNGPVAGASR	0	Unmodified	1525.6984	0.69836203	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.95	5	8	4				3	5		5	7	6	7	41.555	37.971	2;3	5.2777E-52	33586	160511_QHF_FH_JSI10i_2	218.54	199.27			1.0592	1.072	21.892	24	2	Median	1.3536	1.1269	20.216	5	0	Median	0.85687	1.0486	32.364	6	0	Median	1.0889	1.0644	3.3295	6	0	Median	0.97556	1.067	23.908	7	2	Median	5737500000	2940000000	2797600000	1016800000	441670000	575170000	1322400000	701780000	620610000	1802800000	930640000	872150000	1595500000	865870000	729630000	17241	1327	16335	104915;104916;104917;104918;104919;104920;104921;104922;104923;104924;104925;104926;104927;104928;104929;104930;104931;104932;104933;104934;104935;104936;104937;104938;104939	141524;141525;141526;141527;141528;141529;141530;141531;141532;141533;141534;141535;141536;141537;141538;141539;141540;141541;141542;141543;141544;141545;141546;141547;141548;141549;141550;141551;141552;141553;141554;141555;141556;141557;141558	141554			35	
FYEQMNGPVAGASR	0	Oxidation (M)	1541.6933	0.69327665	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.45	4	4					3	3		3	3	4	4	29.315	24.883	2	7.5517E-11	14951	160513_QHF_FH_JSI12Kac_4	122.39	114.47			1.0226	1.0712	14.594	14	0	Median	1.448	1.2067	16.196	3	0	Median	0.85829	1.0258	19.81	3	0	Plateau	0.99757	0.98956	8.9756	4	0	Median	0.92961	1.0123	14.267	4	0	Median	629190000	294880000	334310000	100820000	31497000	69326000	150280000	79586000	70690000	158810000	67399000	91410000	219280000	116400000	102880000	17242	1327	16335	104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952;104953	141559;141560;141561;141562;141563;141564;141565;141566;141567;141568;141569;141570;141571;141572;141573;141574;141575;141576;141577;141578	141575		973	20	
FYEQVVQAIQR	0	Unmodified	1379.7197	0.7197494	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	56.666	55.776	2	8.9122E-06	47697	160511_QHF_FH_JSI12i_2	111.61	86.752			6.1814	7.0934	91.762	3	3	Median	NaN	NaN	NaN	0	0	Median	10.143	12.458	NaN	1	1	Median	2.1342	2.0711	NaN	1	1	Median	6.1814	7.0934	NaN	1	1	Median	117920000	26539000	91379000	0	0	0	45782000	8582500	37199000	18179000	4998800	13180000	53958000	12958000	41000000	17243	4387	16336	104954;104955;104956;104957	141579;141580;141581;141582	141580			4	
FYESKYASCLK	2	Acetyl (K)	1436.6646	0.66460229	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		59.027	48.145	2	0.015306	26335	160513_QHF_FH_JSI11Kac_5	61.353	53.133			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3235600	3235600	0	0	0	0	0	0	0	3235600	3235600	0	0	0	0	17244	2349	16337	104958	141583	141583	2431		1	
FYFEELGK	1	Unmodified	1031.4964	0.49639797	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	64.858	64.067	2	0.0014792	56198	160511_QHF_FH_JSI9i_2	88.942	70.212			0.83711	0.86719	33.7	5	1	Median	0.95876	0.83005	NaN	1	0	Median	0.5429	0.64115	48.992	2	1	Median	0.83711	0.86719	NaN	1	0	Median	1.0143	1.1119	NaN	1	0	Median	1124100000	594870000	529200000	186880000	88928000	97951000	309890000	194740000	115160000	403390000	205410000	197980000	223900000	105790000	118110000	17245	2294	16338	104959;104960;104961;104962;104963	141584;141585;141586;141587;141588;141589;141590;141591	141587			8	
FYFENLLSK	1	Unmodified	1159.5914	0.59136099	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	2	0		3								1	1		1	85.887	85.173	2	0.057105	75710	160511_QHF_FH_JSI10i_2	53.089	35.849			0.87656	0.88439	17.826	3	0	Median	1.0461	0.88439	NaN	1	0	Median	0.56168	0.68114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87656	0.95772	NaN	1	0	Median	142340000	80251000	62088000	35512000	16299000	19213000	50893000	36276000	14617000	0	0	0	55934000	27675000	28259000	17246	2439	16339	104964;104965;104966	141592	141592			0	
FYFHDGVR	0	Unmodified	1039.4876	0.48756462	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	36.222	31.811	2;3	0.00052749	26996	160511_QHF_FH_JSI11i_3	69.105	61.18			1.2743	1.2342	20.605	9	1	Median	1.2607	1.0562	4.4484	2	1	Median	1.2057	1.3945	41.263	2	0	Median	1.1481	1.115	15.098	2	0	Median	1.3385	1.3554	9.6103	3	0	Median	1709400000	706850000	1002500000	40282000	19278000	21004000	119510000	48637000	70874000	613700000	294880000	318820000	935860000	344060000	591800000	17247	127	16340	104967;104968;104969;104970;104971;104972;104973;104974;104975	141593;141594;141595;141596;141597;141598;141599;141600;141601;141602	141593			10	
FYFLEAYNAK	1	Unmodified	1264.6128	0.61282471	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3		1	2	1	78.06	71.597	2	3.5157E-09	39227	160513_QHF_FH_JSI10Kac_6	135.83	94.843			0.56603	0.53642	29.148	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47453	0.45701	22.657	2	2	Median	0.65433	0.69677	NaN	1	1	Median	221380000	136200000	85179000	0	0	0	0	0	0	180650000	110090000	70556000	40728000	26106000	14623000	17248	1273	16341	104976;104977;104978;104979	141603;141604;141605;141606	141606			4	
FYFLLDK	1	Unmodified	944.50076	0.50075507	9	A0PJW6	TMEM223	Transmembrane protein 223	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	81.396	80.476	2	0.036665	69455	160511_QHF_FH_JSI12i_2	50.127	20.788			0.38106	0.42417	6.2706	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37479	0.4434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38743	0.40577	NaN	1	1	Median	32768000	18161000	14607000	0	0	0	15776000	9173700	6602700	0	0	0	16991000	8987100	8004100	17249	9	16342	104980;104981	141607;141608	141607			2	
FYFNGEYAGFDETQPTAESGGK	1	Unmodified	2414.0339	0.033885488	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			72.919	72.724	3	0.0021236	65922	160511_QHF_FH_JSI10i_1	43.523	34.923			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17250	2083	16343	104982	141609	141609			1	
FYFVGDEDLLEIIGNSK	1	Unmodified	1957.9673	0.96730947	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	101.92	101.79	3	1.2776E-05	89850	160511_QHF_FH_JSI11i_2	84.41	68.644			0.86344	0.86552	39.099	3	0	Median	0.67157	0.5675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86344	0.86552	NaN	1	0	Median	1.1359	1.2394	NaN	1	0	Median	214420000	116430000	97994000	71820000	39291000	32529000	0	0	0	103830000	56846000	46987000	38768000	20291000	18478000	17251	2517	16344	104983;104984;104985	141610;141611	141611			2	
FYGAEIVSALDYLHSEK	1	Unmodified	1940.952	0.95199376	1377	P31749	AKT1	RAC-alpha serine/threonine-protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		98.065	97.889	3	4.3522E-05	85909	160511_QHF_FH_JSI11i_2	55.589	44.319			0.92001	1.054	20.909	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95213	1.2219	NaN	1	0	Median	0.88897	0.90911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33730000	16999000	16731000	0	0	0	13044000	6523600	6520500	20686000	10476000	10210000	0	0	0	17252	1377	16345	104986;104987	141612;141613	141612			1	
FYGAEIVSALEYLHSR	0	Unmodified	1853.9312	0.93119874	1378	P31751	AKT2	RAC-beta serine/threonine-protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		101.02	100.93	3	3.3214E-22	89969	160511_QHF_FH_JSI11i_3	172.43	162.9			0.83074	0.86809	8.1269	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70194	0.81961	NaN	1	0	Median	0.98317	0.91944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168040000	80243000	87795000	0	0	0	57472000	33806000	23666000	110570000	46437000	64129000	0	0	0	17253	1378	16346	104988;104989	141614;141615	141614			2	
FYGDDPQSSPNLGR	0	Unmodified	1551.6954	0.69538514	1561	P43353	ALDH3B1	Aldehyde dehydrogenase family 3 member B1	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	36.074	35.162	2	0.014682	30927	160511_QHF_FH_JSI9i_1	43.68	35.455			1.0699	0.99863	28.114	2	0	Median	1.4636	1.2183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78217	0.81859	NaN	1	0	Median	79147000	42585000	36562000	33311000	12700000	20611000	0	0	0	0	0	0	45836000	29885000	15951000	17254	1561	16347	104990;104991	141616	141616			1	
FYGDEEK	1	Unmodified	886.37086	0.37086311	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.14	4	4	1			3	3	2		3	5	4	5	13.271	8.555	2	0.0041238	6036	160513_QHF_FH_JSI10Kac_4	98.418	32.746			0.90911	0.87839	18.828	17	1	Median	1.0789	0.87559	4.814	3	0	Median	0.75024	0.86581	24.98	5	1	Median	0.88564	0.87137	13.581	4	0	Median	0.93682	1.0133	15.617	5	0	Median	20405000000	10047000000	10358000000	4659800000	2283500000	2376300000	5905200000	3222300000	2682900000	4886000000	2439400000	2446600000	4953600000	2101500000	2852000000	17255	1297	16348	104992;104993;104994;104995;104996;104997;104998;104999;105000;105001;105002;105003;105004;105005;105006;105007;105008	141617;141618;141619;141620;141621;141622;141623;141624;141625;141626;141627;141628;141629;141630;141631;141632;141633;141634;141635;141636	141622			20	
FYGDEEKDK	2	Acetyl (K)	1171.5033	0.50333384	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		26.605	18.962	2	0.015177	11082	160513_QHF_FH_JSI10Kac_3	57.96	53.661			0.6398	0.68747	99.574	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1834	1.3901	NaN	1	0	Median	0.34591	0.33999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21663000	14670000	6992500	0	0	0	5003400	2045000	2958400	16659000	12625000	4034000	0	0	0	17256	1297	16349	105009;105010	141637;141638	141638	1225		2	
FYGELALK	1	Unmodified	939.50657	0.50656873	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	4.07	2	6	2						1	2	3	3	3	53.191	51.264	2	0.0052486	44252	160511_QHF_FH_JSI11i_2	74.127	35.889			0.585	0.5756	63.838	10	9	Median	0.83204	0.69039	50.241	2	1	Median	0.38574	0.46237	19.828	2	2	Median	1.1414	1.1788	81.477	3	3	Plateau	1.4408	1.5353	78.833	3	3	Median	2286300000	1274600000	1011700000	274720000	133760000	140960000	324870000	199420000	125450000	855480000	425090000	430390000	831240000	516340000	314900000	17257	2094	16350	105011;105012;105013;105014;105015;105016;105017;105018;105019;105020;105021	141639;141640;141641;141642;141643;141644;141645;141646;141647;141648;141649;141650	141648			12	
FYGELALKK	2	Unmodified	1067.6015	0.60153174	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			40.633	39.667	3	0.036714	34888	160511_QHF_FH_JSI10i_2	29.755	23.492			0.5196	0.64214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5196	0.64214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19849000	12152000	7696800	0	0	0	19849000	12152000	7696800	0	0	0	0	0	0	17258	2094	16351	105022	141651	141651			1	
FYGIPVTGVLDEETK	1	Unmodified	1666.8454	0.84540342	1735	P51511	MMP15	Matrix metalloproteinase-15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		86.305	86.175	2	0.0030442	78564	160511_QHF_FH_JSI11i_1	57.175	43.017			0.29554	0.33988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29554	0.33988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26838000	19232000	7606200	0	0	0	26838000	19232000	7606200	0	0	0	0	0	0	17259	1735	16352	105023;105024	141652;141653	141652			2	
FYGKNSSYVHGGLDSNGK	2	Acetyl (K)	1970.9123	0.91225421	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.379	38.689	3	0.023762	21060	160513_QHF_FH_JSI11Kac_6	33.405	23.066			0.6195	0.61987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6195	0.61987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4300800	2506700	1794100	0	0	0	0	0	0	4300800	2506700	1794100	0	0	0	17260	2381	16353	105025	141654	141654	2454		1	
FYGNSLSAILEGEAR	0	Unmodified	1625.8049	0.80493559	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		82.299	82.299	2	0.011475	73531	160511_QHF_FH_JSI11i_3	56.087	43.88			0.46534	0.43195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46534	0.43195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21470000	11924000	9545500	0	0	0	0	0	0	21470000	11924000	9545500	0	0	0	17261	4560	16354	105026	141655	141655			1	
FYGPAGPYGIFAGR	0	Unmodified	1471.7248	0.72483478	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.65		2	4						5	4	3	2	2	79.042	74.847	2	1.0981E-09	67225	160511_QHF_FH_JSI12i_3	145.17	136.66			1.1671	1.0723	12.754	11	3	Median	1.2837	1.0751	4.9671	4	2	Median	0.88518	1.0482	7.0844	3	1	Plateau	1.3323	1.3052	20.531	2	0	Median	1.0412	1.0916	8.3781	2	0	Median	1375000000	690590000	684370000	326820000	149190000	177640000	474440000	243680000	230760000	275010000	143680000	131330000	298680000	154040000	144640000	17262	262	16355	105027;105028;105029;105030;105031;105032;105033;105034;105035;105036;105037	141656;141657;141658;141659;141660;141661;141662;141663;141664;141665;141666;141667;141668;141669;141670	141667			14	
FYGPEGPYGVFAGR	0	Unmodified	1515.7147	0.71466402	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	2	3	3	72.677	69.126	2	7.5996E-10	61369	160511_QHF_FH_JSI11i_2	148.32	137.1			1.2951	1.2458	21.557	11	3	Median	1.1663	0.96547	25.742	3	1	Median	1.1373	1.357	39.078	2	0	Median	1.1064	1.1161	11.835	3	1	Plateau	1.3264	1.0895	16.449	3	1	Plateau	2635200000	1318600000	1316600000	445350000	208550000	236800000	498540000	271590000	226950000	1063400000	536570000	526850000	627850000	301870000	325980000	17263	115	16356	105038;105039;105040;105041;105042;105043;105044;105045;105046;105047;105048	141671;141672;141673;141674;141675;141676;141677;141678;141679;141680;141681;141682;141683;141684	141678			14	
FYGPQGTPYEGGVWK	1	Unmodified	1684.7886	0.78855725	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.406	62.499	2	2.8939E-21	53714	160511_QHF_FH_JSI12i_2	172.8	159			1.038	1.1601	5.9264	4	0	Median	1.365	1.1964	NaN	1	0	Median	0.95961	1.1827	NaN	1	0	Median	1.0502	1.0494	NaN	1	0	Median	1.026	1.1379	NaN	1	0	Median	236690000	118920000	117770000	32272000	15985000	16287000	59057000	35397000	23660000	67259000	35792000	31467000	78102000	31745000	46357000	17264	1989	16357	105049;105050;105051;105052	141685;141686;141687;141688;141689;141690;141691;141692	141685			8	
FYGPQVNNISHTK	1	Unmodified	1503.747	0.74702678	126	O00401	WASL	Neural Wiskott-Aldrich syndrome protein	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	33.986	33.476	3	7.7901E-05	28120	160511_QHF_FH_JSI12i_3	71.879	67.164			1.1266	1.136	22.287	3	0	Median	NaN	NaN	NaN	0	0	Median	1.253	1.4644	NaN	1	0	Median	0.99314	0.93916	NaN	1	0	Median	1.1266	1.136	NaN	1	0	Median	323100000	135650000	187450000	0	0	0	27513000	11358000	16155000	131860000	48825000	83034000	163730000	75463000	88263000	17265	126	16358	105053;105054;105055	141693	141693			1	
FYGVTVFK	1	Unmodified	959.51165	0.5116541	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	69.442	60.113	2	0.029995	32551	160513_QHF_FH_JSI11Kac_6	49.325	29.689			1.2958	1.2469	28.959	3	0	Median	0.95512	0.81885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2958	1.2469	NaN	1	0	Median	1.3332	1.4266	NaN	1	0	Median	148220000	66224000	81993000	50190000	24057000	26132000	0	0	0	71442000	31129000	40313000	26586000	11038000	15548000	17266	2806	16359	105056;105057;105058	141694	141694			1	
FYIAQWFR	0	Unmodified	1129.5709	0.57090032	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.529	78.268	2	3.6617E-07	44591	160513_QHF_FH_JSI10Kac_6	143.37	131.16			1.0622	1.0024	21.324	4	0	Median	1.0478	0.88586	NaN	1	0	Median	0.75055	0.88776	NaN	1	0	Median	1.4337	1.3776	NaN	1	0	Median	1.0769	1.1319	NaN	1	0	Median	692040000	396710000	295340000	126030000	57354000	68679000	343360000	235320000	108040000	115790000	45027000	70765000	106860000	59004000	47854000	17267	3063	16360	105059;105060;105061;105062	141695;141696;141697;141698;141699;141700;141701;141702	141701			8	
FYIDPYK	1	Unmodified	944.46437	0.46436956	5116	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.308	51.782	2	0.017885	44744	160511_QHF_FH_JSI11i_2	60.788	49.419			1.9295	1.9733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9295	1.9733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157110000	41396000	115710000	0	0	0	0	0	0	157110000	41396000	115710000	0	0	0	17268	5116	16361	105063	141703	141703			1	
FYIEGSEPGK	1	Unmodified	1125.5342	0.53424004	4485	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	38.181	37.762	2	0.00038461	34322	160511_QHF_FH_JSI12i_1	76.221	72.287			1.1176	1.0792	33.779	3	1	Median	NaN	NaN	NaN	0	0	Median	0.60585	0.71667	NaN	1	1	Median	1.1176	1.0792	NaN	1	0	Median	1.3399	1.4007	NaN	1	0	Median	201410000	115580000	85835000	0	0	0	58801000	31649000	27151000	79564000	42935000	36630000	63047000	40993000	22054000	17269	4485	16362	105064;105065;105066;105067	141704;141705;141706;141707;141708;141709	141707			6	
FYIFSQFMYDEHIK	1	Unmodified	1866.8651	0.86509301	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	87.22	78.947	3	2.8706E-17	43377	160513_QHF_FH_JSI9Kac_6	139.3	134.09			0.83317	0.98074	17.625	4	0	Linear	1.5284	1.3153	NaN	1	0	Median	0.86858	1.0182	NaN	1	0	Median	1.5806	1.544	NaN	1	0	Median	1.0951	1.174	NaN	1	0	Median	573590000	273010000	300580000	106310000	41034000	65280000	237370000	129630000	107730000	91238000	29008000	62230000	138670000	73332000	65337000	17270	2793	16363	105068;105069;105070;105071	141710;141711;141712;141713	141710			4	
FYIYLGFAVSISLWICVQIVIK	1	Unmodified	2631.4539	0.45387522	5023	Q9NV66	TYW1	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		96.962	96.962	4	0.054015	86434	160511_QHF_FH_JSI11i_3	14.015	14.015			0.95331	0.88575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95331	0.88575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78574000	41892000	36683000	0	0	0	0	0	0	78574000	41892000	36683000	0	0	0	17271	5023	16364	105072	141714	141714			1	
FYKDVLEVGELAK	2	Acetyl (K)	1551.8185	0.81846039	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	1.03					1		2	7	4	4	3	3	4	84.22	74.438	2	1.1521E-24	40555	160513_QHF_FH_JSI9Kac_6	165.7	147.43			0.94624	0.93988	18.899	12	0	Median	0.95805	0.81164	13.872	3	0	Median	1.2147	1.4401	31.675	3	0	Plateau	1.0227	0.9921	10.79	3	0	Plateau	1.2178	1.2882	16.861	3	0	Plateau	1143400000	562540000	580820000	163380000	93020000	70361000	253360000	130840000	122520000	521540000	249140000	272400000	205080000	89540000	115540000	17272	4614	16365	105073;105074;105075;105076;105077;105078;105079;105080;105081;105082;105083;105084;105085;105086	141715;141716;141717;141718;141719;141720;141721;141722;141723;141724;141725;141726;141727;141728;141729;141730;141731;141732;141733;141734;141735;141736;141737	141731	3197		22	
FYKHNAAFCYK	2	Acetyl (K)	1489.6813	0.6812554	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		47.075	37.4	2;3	0.00036022	20391	160513_QHF_FH_JSI11Kac_6	77.744	69.833			0.21813	0.21197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21813	0.21197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17673000	15036000	2637000	0	0	0	0	0	0	17673000	15036000	2637000	0	0	0	17273	2160	16366	105087;105088	141738;141739	141738	2266		2	
FYKNEGGTWSVEK	2	Acetyl (K)	1585.7413	0.7412727	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		59.689	48.807	2	0.0013505	26710	160513_QHF_FH_JSI11Kac_5	83.31	58.093			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1878900	1878900	0	0	0	0	0	0	0	1878900	1878900	0	0	0	0	17274	2374	16367	105089	141740;141741	141741	2443		2	
FYKNWHK	2	Acetyl (K)	1063.524	0.52395013	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									7		2	5		37.366	28.15	2;3	0.00045973	15862	160513_QHF_FH_JSI11Kac_6	105.39	81.962			0.31164	0.28657	116.85	7	1	Median	NaN	NaN	NaN	0	0	Median	1.1582	1.3573	21.61	2	0	Median	0.25075	0.24634	120.5	5	1	Median	NaN	NaN	NaN	0	0	Median	184120000	131120000	52999000	0	0	0	25117000	9792700	15325000	159000000	121330000	37674000	0	0	0	17275	1484	16368	105090;105091;105092;105093;105094;105095;105096	141742;141743;141744;141745;141746;141747;141748	141744	1490		7	
FYLAELALALDHLHSLGIIYR	0	Unmodified	2427.3315	0.3314519	1755	P51812;Q15349	RPS6KA3;RPS6KA2	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	97.942	89.668	3;4	8.7736E-107	48670	160513_QHF_FH_JSI12Kac_6	240.07	226.2			1.1343	1.0329	28.116	7	1	Median	1.2143	1.0401	0.98088	2	0	Median	0.82919	0.98431	6.2202	2	0	Median	1.4304	1.3735	32.977	2	1	Median	0.62751	0.66441	NaN	1	0	Median	5587200000	2868600000	2718600000	1382500000	722810000	659690000	3216300000	1754200000	1462100000	696090000	232040000	464050000	292290000	159560000	132730000	17276	1755	16369	105097;105098;105099;105100;105101;105102;105103	141749;141750;141751;141752;141753;141754;141755;141756;141757;141758	141755			10	
FYLAELALGLDHLHSLGIIYR	0	Unmodified	2413.3158	0.31580184	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	96.674	88.598	4	1.1136E-59	52513	160513_QHF_FH_JSI10Kac_6	190.23	176.8			0.79951	0.91056	18.233	3	0	Plateau	1.043	0.90677	NaN	1	0	Median	0.75983	0.91056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.172	1.2461	NaN	1	0	Median	932210000	495880000	436330000	288230000	136810000	151420000	511370000	302360000	209010000	0	0	0	132600000	56710000	75895000	17277	2669	16370	105104;105105;105106	141759;141760;141761	141761			2	
FYLAFQSVHK	1	Unmodified	1238.6448	0.64479354	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	3.74			1						10	2	2	4	3	66.681	58.344	2;3	1.2227E-09	31937	160513_QHF_FH_JSI10Kac_6	121.8	116.02			0.7649	0.7987	57.294	11	8	Median	0.66889	0.57596	46.237	2	1	Median	0.30744	0.36728	40.465	2	2	Median	1.1281	1.067	46.216	4	3	Median	0.7649	0.8172	66.441	3	2	Median	558780000	285630000	273160000	92894000	50528000	42366000	181130000	100750000	80375000	184940000	85573000	99365000	99825000	48776000	51049000	17278	2302	16371	105107;105108;105109;105110;105111;105112;105113;105114;105115;105116;105117	141762;141763;141764;141765;141766;141767;141768;141769;141770;141771;141772;141773;141774;141775	141774			14	
FYLDLYPR	0	Unmodified	1085.5546	0.55458155	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	76.678	75.766	2	0.019171	66765	160511_QHF_FH_JSI9i_2	46.994	32.991			0.96851	1.1448	5.2982	3	0	Median	1.2765	1.1448	NaN	1	0	Median	0.96851	1.1984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9567	1.0782	NaN	1	0	Median	171900000	66974000	104920000	46734000	17303000	29431000	70141000	30978000	39163000	0	0	0	55022000	18693000	36329000	17279	1787	16372	105118;105119;105120	141776	141776			1	
FYLENLEQMVK	1	Unmodified	1412.701	0.70098779	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.91	92.45	2	6.6129E-06	79819	160511_QHF_FH_JSI12i_2	110.14	83.021			0.89084	0.91742	11.431	4	0	Median	1.2764	1.0851	NaN	1	0	Median	0.68618	0.82409	NaN	1	0	Median	0.94048	0.93118	NaN	1	0	Median	0.84382	0.90387	NaN	1	0	Median	114860000	60864000	53995000	21700000	9694200	12005000	26029000	15777000	10253000	41138000	21811000	19327000	25993000	13582000	12410000	17280	3748	16373	105121;105122;105123;105124	141777;141778;141779;141780	141777			4	
FYLGGPTSIR	0	Unmodified	1109.5869	0.58694431	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		56.681	55.911	2	0.036733	49499	160511_QHF_FH_JSI11i_3	45.161	21.732			0.95187	0.98253	3.2781	2	0	Median	NaN	NaN	NaN	0	0	Median	0.868	1.0056	NaN	1	0	Median	1.0438	0.96001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102010000	49638000	52372000	0	0	0	32619000	16063000	16556000	69391000	33575000	35816000	0	0	0	17281	5645	16374	105125;105126	141781;141782	141781			2	
FYLLNIR	0	Unmodified	937.53854	0.53853756	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	76.547	73.211	2	3.0578E-12	38490	160513_QHF_FH_JSI11Kac_6	160.1	129.39			0.98011	0.97475	17.037	12	0	Median	1.0997	0.94896	16.846	3	0	Median	0.73977	0.88801	10.024	3	0	Median	1.1057	1.0589	19.141	3	0	Median	1.0418	1.0575	26.871	3	0	Plateau	2024100000	1034900000	989200000	574000000	277690000	296320000	660480000	379290000	281190000	443250000	208310000	234930000	346380000	169630000	176760000	17282	2958	16375	105127;105128;105129;105130;105131;105132;105133;105134;105135;105136;105137;105138	141783;141784;141785;141786;141787;141788;141789;141790;141791;141792;141793;141794;141795;141796;141797;141798;141799;141800;141801;141802	141788			20	
FYLLYIRPEGQDSAFSWTDLLLK	1	Unmodified	2774.432	0.43195381	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	98.077	89.983	2;3	2.1566E-103	51046	160513_QHF_FH_JSI9Kac_6	278.18	221.53			1.0438	1.052	17.935	6	1	Median	1.1325	0.97359	2.6254	2	1	Median	0.95767	1.1332	2.1991	2	0	Median	1.394	1.3148	NaN	1	0	Median	0.74931	0.78206	NaN	1	0	Median	6721000000	3225700000	3495300000	2221100000	944300000	1276800000	2968400000	1492100000	1476400000	944630000	406250000	538380000	586930000	383110000	203810000	17283	1872	16376	105139;105140;105141;105142;105143;105144	141803;141804;141805;141806;141807;141808;141809;141810;141811	141805			9	
FYLPLLIHQHEK	1	Unmodified	1536.8453	0.84528426	4655	Q9H1C3	GLT8D2	Glycosyltransferase 8 domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.906	68.396	4	0.00072301	37280	160513_QHF_FH_JSI10Kac_6	65.563	51.883			0.71109	0.84289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71109	0.84289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18223000	12151000	6072600	0	0	0	18223000	12151000	6072600	0	0	0	0	0	0	17284	4655	16377	105145	141812	141812			1	
FYLTLPGTK	1	Unmodified	1038.575	0.57498264	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		72.579	71.88	2	0.038612	62955	160511_QHF_FH_JSI11i_2	38.302	27.474			0.81916	0.90845	10.433	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69056	0.84384	NaN	1	0	Median	0.9717	0.978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39633000	20427000	19206000	0	0	0	14650000	7229200	7421100	24983000	13198000	11785000	0	0	0	17285	4765	16378	105146;105147	141813	141813			1	
FYLVYTIQTNR	0	Unmodified	1416.7402	0.74015049	18	A4D1P6	WDR91	WD repeat-containing protein 91	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	78.735	69.293	2	0.0041776	36586	160513_QHF_FH_JSI12Kac_6	71.451	62.262			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3932700	0	3932700	0	0	0	0	0	0	0	0	0	3932700	0	3932700	17286	18	16379	105148	141814	141814			1	
FYMFHSFK	1	Unmodified	1105.5055	0.50552287	581	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	3	3	3	3	61.384	55.834	2;3	0.00059439	48908	160511_QHF_FH_JSI11i_3	79.474	76.174			0.83751	0.81399	26.89	11	1	Median	0.80416	0.67706	26.931	3	1	Median	0.66529	0.77912	6.1935	2	0	Median	1.1082	1.0506	17.766	3	0	Plateau	0.98211	1.0084	16.31	3	0	Plateau	558660000	300630000	258030000	117560000	73188000	44372000	128920000	78784000	50140000	171480000	86552000	84929000	140700000	62109000	78586000	17287	581	16380	105149;105150;105151;105152;105153;105154;105155;105156;105157;105158;105159;105160	141815;141816;141817;141818;141819;141820;141821;141822;141823;141824;141825;141826	141816			12	
FYMIQSFTQFPGNSVAPAALFLAAK	1	Unmodified	2718.388	0.3879805	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		98.526	89.115	3	0.0059398	51069	160513_QHF_FH_JSI11Kac_6	45.579	38.547			1.6742	1.6097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6742	1.6097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118940000	47173000	71771000	0	0	0	0	0	0	118940000	47173000	71771000	0	0	0	17288	428	16381	105161	141827	141827			0	
FYMLCLMTRK	1	2 Oxidation (M)	1393.6556	0.65563428	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	2	1	By MS/MS				1	0	1									1				42.489	41.275	2	0.037763	36544	160511_QHF_FH_JSI9i_1	31.304	16.153			4.5991	3.8241	NaN	1	0	Median	4.5991	3.8241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203180000	49399000	153780000	203180000	49399000	153780000	0	0	0	0	0	0	0	0	0	17289	4816	16382	105162	141828	141828			1	
FYMVSYYER	0	Unmodified	1256.5536	0.55359527	5625	Q9Y4E6	WDR7	WD repeat-containing protein 7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			65.901	57.875	2	0.033086	31881	160513_QHF_FH_JSI10Kac_6	54.611	45.699			0.39901	0.48608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39901	0.48608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26810000	16978000	9832700	0	0	0	26810000	16978000	9832700	0	0	0	0	0	0	17290	5625	16383	105163	141829	141829			1	
FYMYELLK	1	Unmodified	1105.5518	0.55180436	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	1	2	2	84.204	79.268	2	0.0016552	76046	160511_QHF_FH_JSI11i_2	100.19	0			1.0036	1.013	33.429	6	4	Median	1.726	1.4726	NaN	1	1	Median	0.44493	0.54332	NaN	1	1	Median	1.011	1.013	6.0208	2	1	Median	0.91412	0.97344	20.478	2	1	Median	428620000	238260000	190360000	103250000	34269000	68985000	128000000	96275000	31721000	103050000	53875000	49172000	94328000	53844000	40485000	17291	1165	16384	105164;105165;105166;105167;105168;105169	141830;141831;141832;141833;141834;141835	141831			6	
FYNAGLAYCHSK	1	Unmodified	1429.6449	0.6448699	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.75	5.93		2	1						1		2	1	1	33.324	30.823	3	0.012204	27147	160511_QHF_FH_JSI10i_2	43.03	34.517			1.0963	1.3308	113.68	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0963	1.3308	96.162	2	2	Median	0.54188	0.55422	NaN	1	1	Median	6.1241	6.0357	NaN	1	1	Median	75598000	38681000	36917000	0	0	0	24439000	13592000	10847000	20733000	14158000	6574700	30426000	10931000	19495000	17292	3700	16385	105170;105171;105172;105173	141836;141837;141838;141839	141837			4	
FYNELTEILVR	0	Unmodified	1395.7398	0.73981614	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	2	1	1	88.319	86.723	2	7.2703E-06	76587	160511_QHF_FH_JSI12i_2	109.79	102.22			0.78108	0.92728	24.544	5	2	Median	1.7948	1.5247	NaN	1	1	Median	0.74174	0.88669	11.217	2	1	Median	0.90601	0.92728	NaN	1	0	Median	0.78108	0.88135	NaN	1	0	Median	551560000	278670000	272900000	95529000	36371000	59159000	158220000	94115000	64102000	183750000	86695000	97059000	114060000	61484000	52577000	17293	3766	16386	105174;105175;105176;105177;105178	141840;141841;141842;141843;141844	141840			5	
FYNFVILHAR	0	Unmodified	1278.6873	0.68732706	3394	Q8IUC6	TICAM1	TIR domain-containing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	72.908	63.993	2;3	1.1435E-07	33495	160513_QHF_FH_JSI12Kac_6	123.86	110.46			0.93325	0.89113	36.263	5	2	Median	1.4088	1.179	NaN	1	0	Median	0.39915	0.47926	NaN	1	1	Median	0.93325	0.87956	NaN	1	0	Median	0.9439	1.012	17.987	2	1	Median	724280000	439040000	285230000	132270000	50488000	81781000	304310000	227900000	76413000	164180000	98878000	65306000	123510000	61773000	61735000	17294	3394	16387	105179;105180;105181;105182;105183;105184	141845;141846;141847;141848;141849;141850;141851;141852;141853	141850			9	
FYNLVLLPR	0	Unmodified	1133.6597	0.65971533	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	82.104	77.602	2	4.3354E-11	40349	160513_QHF_FH_JSI11Kac_6	154.31	128.57			0.92732	0.92064	13.659	8	0	Median	1.2886	1.0941	23.576	2	0	Median	0.7368	0.88882	12.423	2	0	Median	0.92732	0.90914	0.94996	2	0	Median	0.88738	0.96996	8.572	2	0	Median	802230000	418710000	383520000	163980000	61218000	102760000	318030000	203590000	114440000	200660000	89573000	111090000	119560000	64329000	55233000	17295	2479	16388	105185;105186;105187;105188;105189;105190;105191;105192	141854;141855;141856;141857;141858;141859;141860;141861;141862;141863;141864;141865;141866;141867	141857			14	
FYNNVQGLVPK	1	Unmodified	1277.6768	0.67682195	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.837	54.325	2	0.00050321	47002	160511_QHF_FH_JSI11i_2	78.264	64.057			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17296	2564	16389	105193	141868	141868			1	
FYPEDVAEELIQDITQK	1	Unmodified	2036.9943	0.99425251	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.593	2	9	3							2	5	3	4	102.97	102.89	2;3	3.7899E-40	88769	160511_QHF_FH_JSI12i_2	244.58	195.23			0.94325	0.99891	10.638	13	2	Median	1.0499	0.88997	20.402	2	0	Median	0.77629	0.95612	11.221	5	2	Median	1.0139	0.98469	4.1815	3	0	Median	0.94325	1.0636	5.0835	3	0	Median	2552900000	1341500000	1211400000	367040000	175280000	191760000	691560000	402860000	288700000	933590000	472960000	460620000	560730000	290390000	270340000	17297	1073	16390	105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204;105205;105206;105207	141869;141870;141871;141872;141873;141874;141875;141876;141877;141878;141879;141880;141881;141882;141883;141884;141885;141886;141887	141874			19	
FYPEDVSEELIQDITQR	0	Unmodified	2080.9953	0.99531514	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		3	1	101.74	101.62	2;3	2.6602E-23	89377	160511_QHF_FH_JSI11i_2	218.5	197.19			1.0493	1.0459	10.648	5	2	Median	1.0493	0.86946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0683	1.0459	7.9073	3	2	Median	0.99392	1.1177	NaN	1	0	Median	2771900000	1363700000	1408200000	423380000	188520000	234860000	0	0	0	1499300000	758880000	740440000	849170000	416250000	432920000	17298	1270	16391	105208;105209;105210;105211;105212	141888;141889;141890;141891;141892	141892			5	
FYPHTHNMDGFFIAK	1	Unmodified	1823.8454	0.84536062	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.763	62.482	3	0.0090261	53891	160511_QHF_FH_JSI12i_3	41.542	32.976			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17299	1580	16392	105213	141893	141893			1	
FYPIPSLHSTGS	0	Unmodified	1304.6401	0.6401021	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	64.449	63.902	2	0.00014813	54977	160511_QHF_FH_JSI12i_2	82.279	45.884			0.95662	0.97679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95662	0.97679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136070000	80824000	55245000	0	0	0	0	0	0	136070000	80824000	55245000	0	0	0	17300	4673	16393	105214;105215	141894;141895	141894			2	
FYPLEIDYGQDEEAVK	1	Unmodified	1914.8887	0.8887248	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	80.553	80.083	2;3	2.9495E-07	71217	160511_QHF_FH_JSI9i_1	154.36	140.93			1.1384	1.1441	30.268	8	7	Median	2.0736	1.7319	50.369	2	2	Median	1.0741	1.2507	13.343	2	2	Median	1.1404	1.0908	7.4779	2	1	Median	0.96836	0.99333	9.7811	2	2	Median	811350000	429490000	381860000	120650000	49975000	70673000	225350000	119800000	105550000	226980000	119910000	107070000	238370000	139800000	98571000	17301	939	16394	105216;105217;105218;105219;105220;105221;105222;105223	141896;141897;141898;141899;141900;141901;141902;141903;141904;141905;141906;141907;141908	141907			13	
FYPLEIDYGQDEEAVKK	2	Unmodified	2042.9837	0.98368782	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.83	0.687	2	3	1							1	2	3		70.75	70.18	3	1.0712E-06	61416	160511_QHF_FH_JSI11i_2	108.96	104.99			0.9223	0.87542	8.3875	5	0	Median	0.99539	0.87518	NaN	1	0	Median	0.71675	0.85537	14.688	2	0	Median	0.92882	0.90896	5.3173	2	0	Median	NaN	NaN	NaN	0	0	Median	733890000	388360000	345540000	129850000	64258000	65596000	253310000	155400000	97918000	350730000	168700000	182020000	0	0	0	17302	939	16395	105224;105225;105226;105227;105228;105229	141909;141910;141911;141912;141913;141914	141912			6	
FYPPDPAQLTEDITR	0	Unmodified	1761.8574	0.85736509	4719;988	Q9H4G0;P11171	EPB41L1;EPB41	Band 4.1-like protein 1;Protein 4.1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	88.964	88.551	2	0.00015566	80644	160511_QHF_FH_JSI12i_1	93.959	69.105			0.8611	0.87127	13.558	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80592	0.79162	NaN	1	0	Median	0.92007	0.95893	NaN	1	0	Median	80313000	41201000	39112000	0	0	0	0	0	0	41628000	23306000	18322000	38685000	17895000	20790000	17303	4719;988	16396	105230;105231;105232	141915;141916;141917;141918	141917			4	
FYPPDPSQLTEDITR	0	Unmodified	1777.8523	0.85227972	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	85.138	84.637	2	0.0060247	77131	160511_QHF_FH_JSI12i_1	52.247	42.015			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17304	339	16397	105233	141919	141919			1	
FYQAEMEELDFISAVEK	1	Unmodified	2047.9449	0.94485947	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.6	5	11							7	5	7	7	4	97.86	95.197	2;3	3.4739E-127	88666	160511_QHF_FH_JSI11i_2	319.39	296.81			0.89765	0.99616	30.802	22	11	Median	1.4372	1.2145	28.863	5	3	Median	0.77898	0.89541	29.938	6	2	Median	0.89698	0.91412	35.038	7	5	Median	0.91137	1.0024	26.283	4	1	Median	4211800000	2299400000	1912400000	844690000	410370000	434330000	1015400000	613490000	401900000	1647200000	906740000	740420000	704530000	368800000	335730000	17305	1425	16398	105234;105235;105236;105237;105238;105239;105240;105241;105242;105243;105244;105245;105246;105247;105248;105249;105250;105251;105252;105253;105254;105255;105256	141920;141921;141922;141923;141924;141925;141926;141927;141928;141929;141930;141931;141932;141933;141934;141935;141936;141937;141938;141939;141940;141941;141942;141943;141944;141945	141934			26	
FYQASTSELYGK	1	Unmodified	1392.6561	0.65614609	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	41.983	41.286	2	9.9004E-23	37295	160511_QHF_FH_JSI11i_1	174.41	145.04			1.5312	1.6761	34.067	6	3	Median	NaN	NaN	NaN	0	0	Median	1.4107	1.6759	21.049	2	1	Median	2.3873	2.38	41.522	2	1	Median	1.2757	1.3621	21.277	2	1	Median	810810000	328540000	482270000	0	0	0	257960000	121970000	135990000	339630000	110370000	229260000	213220000	96202000	117010000	17306	427	16399	105257;105258;105259;105260;105261;105262	141946;141947;141948;141949;141950;141951;141952	141947			7	
FYQEPNGETPSSLYR	0	Unmodified	1786.8162	0.81622856	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	47.591	46.636	2	1.5616E-07	41083	160511_QHF_FH_JSI10i_2	93.258	83.57			0.94565	1.0231	16.225	5	3	Median	1.1652	1.0231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0798	1.0634	21.489	2	1	Median	0.85213	0.91683	19.005	2	2	Median	114610000	54381000	60231000	13284000	6389100	6895300	0	0	0	68865000	31037000	37827000	32463000	16955000	15508000	17307	3675	16400	105263;105264;105265;105266;105267;105268	141953;141954;141955;141956;141957;141958	141958			6	
FYQGFLFSEKPEK	2	Unmodified	1618.8031	0.80314468	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.36		4	9						7	3	4	6	7	65.418	62.103	2;3	3.9719E-06	34084	160513_QHF_FH_JSI10Kac_6	134.75	110.9			0.97173	1.0165	96.722	18	10	Median	0.89113	0.7665	49.528	3	2	Plateau	0.85939	1.0165	81.592	4	2	Median	1.6438	1.5766	119.59	5	3	Median	0.90104	0.96311	117.26	6	3	Median	5588000000	2152200000	3435800000	579800000	241380000	338420000	793200000	488320000	304880000	1763600000	403650000	1359900000	2451400000	1018800000	1432600000	17308	2094	16401	105269;105270;105271;105272;105273;105274;105275;105276;105277;105278;105279;105280;105281;105282;105283;105284;105285;105286;105287;105288	141959;141960;141961;141962;141963;141964;141965;141966;141967;141968;141969;141970;141971;141972;141973;141974;141975;141976;141977;141978;141979;141980;141981;141982;141983	141983			25	
FYQGFLFSEKPEK	2	Acetyl (K)	1660.8137	0.81370936	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									6	1		3	2	80.317	71.074	2;3	5.7953E-40	39263	160513_QHF_FH_JSI11Kac_6	190.15	167.92			0.64304	0.61814	77.711	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64304	0.61814	52.98	3	1	Median	0.29519	0.30993	129.17	2	1	Median	764110000	547920000	216190000	23069000	8487900	14581000	0	0	0	464010000	318930000	145080000	277040000	220500000	56532000	17309	2094	16401	105289;105290;105291;105292;105293;105294	141984;141985;141986;141987;141988;141989	141984	2192		6	
FYQPYSEDTQQQIIR	0	Unmodified	1914.9112	0.91119158	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								3	4	2	3	54.904	54.16	2	2.2424E-11	47755	160511_QHF_FH_JSI10i_2	103.34	90.361			1.0122	0.99682	30.553	8	7	Median	1.5561	1.2762	21.995	2	2	Median	0.95567	1.1152	29.096	2	2	Median	1.0122	0.99682	7.5735	2	1	Median	0.63672	0.67091	23.343	2	2	Median	316520000	152080000	164440000	60345000	20851000	39494000	96061000	47979000	48082000	86547000	43673000	42874000	73564000	39577000	33987000	17310	3846	16402	105295;105296;105297;105298;105299;105300;105301;105302;105303;105304;105305;105306	141990;141991;141992;141993;141994;141995;141996;141997;141998;141999;142000;142001;142002;142003	142003			14	
FYQVPVPLPDRR	0	Unmodified	1485.8092	0.80923311	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							3	2	1		62.163	61.111	3	9.127E-06	51053	160511_QHF_FH_JSI10i_3	103.91	98.416			0.9122	0.98323	30.862	6	3	Median	1.5995	1.3557	43.652	3	1	Median	0.82456	0.97883	17.8	2	1	Median	0.86546	0.87084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	336410000	150180000	186230000	154950000	63219000	91727000	124530000	62089000	62439000	56935000	24870000	32065000	0	0	0	17311	5532	16403	105307;105308;105309;105310;105311;105312	142004;142005;142006;142007;142008;142009	142005			6	
FYRAPEIIIGK	1	Unmodified	1305.7445	0.74450759	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			56.463	54.907	3	0.018895	44987	160511_QHF_FH_JSI9i_3	42.031	32.598			1.1452	1.099	4.0952	2	1	Median	1.3693	1.1312	NaN	1	1	Median	0.95785	1.0676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59144000	25328000	33815000	28443000	10887000	17556000	30701000	14441000	16259000	0	0	0	0	0	0	17312	2432	16404	105313;105314	142010;142011	142011			2	
FYSAEISLALNYLHER	0	Unmodified	1924.9683	0.96831253	1523	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	97.653	97.673	3	0.0022365	84436	160511_QHF_FH_JSI12i_3	55.011	49.906			3.2211	3.4032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2211	3.4032	NaN	1	1	Median	21509000	8989900	12519000	0	0	0	0	0	0	0	0	0	21509000	8989900	12519000	17313	1523	16405	105315	142012	142012			1	
FYSFLVLK	1	Unmodified	1015.5743	0.57425436	396	O60216;Q9H4I0	RAD21;RAD21L1	Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.55		2	2					1	5	3	3	2	2	83.379	78.084	2	0.0010672	40850	160513_QHF_FH_JSI11Kac_6	102.72	60.61			0.97027	1.1258	33.809	9	4	Median	0.89728	0.76017	53.496	3	1	Median	0.87087	1.0311	13.953	2	1	Median	1.0817	1.0694	19.338	2	1	Median	1.3083	1.3966	30.479	2	1	Median	2649500000	1239200000	1410300000	776060000	380460000	395600000	775110000	314450000	460660000	577700000	312000000	265700000	520650000	232300000	288350000	17314	396	16406	105316;105317;105318;105319;105320;105321;105322;105323;105324;105325	142013;142014;142015;142016;142017;142018;142019;142020;142021;142022;142023;142024	142016			12	
FYSFLVLKK	2	Unmodified	1143.6692	0.66921738	396	O60216;Q9H4I0	RAD21;RAD21L1	Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1	yes	no	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			73.359	65.333	3	0.0067099	34849	160513_QHF_FH_JSI9Kac_6	52.579	35.908			0.58515	0.58535	120.68	2	2	Median	0.29328	0.24936	NaN	1	1	Median	1.1675	1.3741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41940000	24888000	17052000	18296000	12003000	6293000	23644000	12885000	10759000	0	0	0	0	0	0	17315	396	16407	105326;105327	142025;142026	142025			2	
FYSGTGFK	1	Unmodified	905.42832	0.42831841	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				27.323	26.288	2	0.0085564	22708	160511_QHF_FH_JSI9i_2	57.177	29.653			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17316	3926	16408	105328	142027	142027			1	
FYSLGHLSIQR	0	Unmodified	1319.6986	0.69862003	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	3	1		62.107	53.248	2;3	1.2049E-07	29286	160513_QHF_FH_JSI10Kac_6	116.52	87.356			1.0817	1.1351	12.071	4	1	Median	1.1112	0.93816	NaN	1	0	Median	1.009	1.186	7.5171	2	1	Median	1.1744	1.1457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160900000	70650000	90254000	32125000	10039000	22085000	97323000	46045000	51278000	31456000	14566000	16891000	0	0	0	17317	3679	16409	105329;105330;105331;105332;105333	142028;142029;142030;142031;142032;142033;142034	142033			7	
FYSLLDPSYAK	1	Unmodified	1302.6496	0.64960415	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	3	2	1	70.468	69.755	2	0.00040488	62026	160511_QHF_FH_JSI10i_2	87.806	78.01			0.98645	1.0174	36.175	7	7	Median	0.69603	0.58352	NaN	1	1	Median	0.5855	0.72713	29.734	3	3	Plateau	1.0258	1.0195	0.29013	2	2	Median	1.616	1.7479	NaN	1	1	Median	408540000	235240000	173290000	73464000	48442000	25021000	159060000	99470000	59590000	118770000	60504000	58269000	57243000	26828000	30415000	17318	1602	16410	105334;105335;105336;105337;105338;105339;105340	142035;142036;142037;142038;142039;142040;142041	142041			7	
FYSLPQSPQQFK	1	Unmodified	1468.7351	0.73506511	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	60.127	59.213	2	1.5468E-05	50808	160511_QHF_FH_JSI12i_2	128.27	112.7			0.50354	0.53645	1.1908	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53343	0.54099	NaN	1	1	Median	0.47534	0.53195	NaN	1	1	Median	223600000	143250000	80352000	0	0	0	0	0	0	127360000	81951000	45414000	96240000	61302000	34938000	17319	3119	16411	105341;105342;105343	142042;142043;142044	142042			3	
FYSLWDTGYAK	1	Unmodified	1349.6292	0.62920306	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	0		By MS/MS	By matching		2	0		2									1	1		72.017	71.317	2	0.00039017	63457	160511_QHF_FH_JSI10i_2	72.243	64.023			0.38569	0.42652	60.357	2	0	Median	NaN	NaN	NaN	0	0	Median	0.23095	0.27835	NaN	1	0	Median	0.6441	0.65357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	175770000	110120000	65647000	0	0	0	65073000	50644000	14429000	110700000	59477000	51218000	0	0	0	17320	3708	16412	105344;105345	142045	142045			1	
FYSQAIELNPSNAIYYGNR	0	Unmodified	2219.0647	0.064732107	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	2	3	78.72	77.996	2;3	1.5766E-43	68640	160511_QHF_FH_JSI11i_2	255.78	243.42			1.3438	1.3442	18.723	10	3	Median	1.3751	1.1852	5.1552	2	0	Median	1.2726	1.5344	19.763	3	1	Median	1.3017	1.3134	15.922	2	1	Median	1.3446	1.5102	27.576	3	1	Median	624990000	259140000	365850000	112460000	42526000	69936000	180590000	72909000	107680000	147000000	64354000	82642000	184940000	79348000	105590000	17321	1793	16413	105346;105347;105348;105349;105350;105351;105352;105353;105354;105355	142046;142047;142048;142049;142050;142051;142052;142053;142054;142055;142056;142057;142058;142059;142060;142061;142062	142057			17	
FYSSQWHVVNYK	1	Unmodified	1556.7412	0.74121312	3996	Q96BY6	DOCK10	Dedicator of cytokinesis protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			57.018	48.507	3	0.014422	26715	160513_QHF_FH_JSI10Kac_6	42.789	30.812			0.62471	0.71225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62471	0.71225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12801000	8143900	4657100	0	0	0	12801000	8143900	4657100	0	0	0	0	0	0	17322	3996	16414	105356	142063	142063			1	
FYSVNVDYSK	1	Unmodified	1220.5714	0.57135383	143	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.37	4	6	1				1	4	1	5	5	4	3	49.336	45.096	2	2.5914E-09	38710	160511_QHF_FH_JSI12i_2	128.12	111.92			1.0401	1.0258	37.01	17	6	Median	1.1052	0.94027	37.65	5	1	Median	0.75285	0.89946	29.858	5	2	Median	0.99855	0.99725	49.76	4	3	Median	1.2255	1.3285	29.017	3	0	Median	2860400000	1495500000	1364900000	416470000	173710000	242770000	582180000	266490000	315700000	1214600000	788320000	426250000	647190000	267020000	380170000	17323	143	16415	105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373	142064;142065;142066;142067;142068;142069;142070;142071;142072;142073;142074;142075;142076;142077;142078;142079;142080;142081;142082;142083;142084	142066			21	
FYSVYGSGQR	0	Unmodified	1162.5407	0.5407224	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	2	1	2	30.588	28.545	2	1.2817E-07	25060	160511_QHF_FH_JSI10i_2	120.87	103.48			1.0615	1	15.645	6	2	Median	1.146	0.9835	NaN	1	0	Median	0.82522	0.99598	0.71004	2	1	Median	1.0223	0.9991	NaN	1	0	Median	1.2537	1.3233	11.286	2	1	Median	580530000	295860000	284670000	109260000	57510000	51754000	146050000	85851000	60197000	147210000	73773000	73435000	178010000	78723000	99285000	17324	5591	16416	105374;105375;105376;105377;105378;105379	142085;142086;142087;142088;142089;142090;142091	142090			7	
FYTAEIVSALEYLHGK	1	Unmodified	1839.9407	0.94070079	298	O15530;Q6A1A2	PDPK1;PDPK2P	3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2	yes	no	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	91.284	82.205	3	0.017251	45911	160513_QHF_FH_JSI9Kac_6	32.746	21.702			0.74864	0.70765	4.2515	2	0	Median	0.86714	0.72924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64634	0.68669	NaN	1	0	Median	98525000	58095000	40429000	58845000	30143000	28702000	0	0	0	0	0	0	39680000	27952000	11728000	17325	298	16417	105380;105381	142092	142092			1	
FYTAEVVLALDAIHSMGLIHR	0	Unmodified	2355.2409	0.24092233	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.739	88.33	4	4.5639E-17	49930	160513_QHF_FH_JSI9Kac_6	129.12	112.63			1.0675	1.0366	10.943	4	0	Median	1.2444	1.0424	NaN	1	0	Median	0.85519	1.0309	NaN	1	0	Median	0.99219	0.93194	NaN	1	0	Median	1.1484	1.215	NaN	1	0	Median	697860000	366970000	330890000	136960000	56204000	80754000	290110000	167700000	122420000	141260000	70740000	70521000	129530000	72331000	57195000	17326	475	16418	105382;105383;105384;105385	142093;142094;142095	142093			3	
FYTAPTAIR	0	Unmodified	1038.5498	0.54983053	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	39.989	39.033	2	0.012703	33486	160511_QHF_FH_JSI11i_2	47.349	38.135			1.0236	1.0263	2.7447	3	0	Median	1.2224	1.0161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.0263	NaN	1	0	Median	0.99114	1.07	NaN	1	0	Median	271640000	129080000	142560000	68790000	24999000	43792000	0	0	0	121500000	61973000	59528000	81348000	42110000	39238000	17327	4938	16419	105386;105387;105388	142096	142096			1	
FYTDPVEAVK	1	Unmodified	1167.5812	0.58119023	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	4	3					3			2	3	2	3	53.048	49.2	2	2.6315E-05	44509	160511_QHF_FH_JSI10i_1	97.431	90.21			0.93186	0.94722	8.2591	10	1	Median	1.0788	0.89125	4.1685	2	0	Median	0.82134	0.95701	2.0706	3	0	Median	1.0487	1.035	5.3183	2	0	Median	0.86721	0.93752	12.779	3	1	Median	5363200000	2715500000	2647700000	1369000000	652610000	716390000	1194600000	688010000	506540000	1387800000	695670000	692150000	1411800000	679180000	732640000	17328	1865	16420	105389;105390;105391;105392;105393;105394;105395;105396;105397;105398	142097;142098;142099;142100;142101;142102;142103;142104;142105;142106;142107;142108;142109;142110;142111;142112	142104			16	
FYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQK	1	Unmodified	4026.9945	0.99447428	800	P04040	CAT	Catalase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.21	91.49	4	5.8466E-66	53189	160513_QHF_FH_JSI10Kac_6	173.04	165.04			0.56233	0.66557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56233	0.66557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	221630000	134750000	86887000	0	0	0	221630000	134750000	86887000	0	0	0	0	0	0	17329	800	16421	105399	142113	142113			1	
FYTEDSPGLK	1	Unmodified	1155.5448	0.54480473	1910	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							2	4	3	2	34.497	33.644	2	6.9071E-06	30039	160511_QHF_FH_JSI11i_1	107.57	93.995			1.3093	1.1934	26.003	10	4	Median	1.4221	1.1934	7.5778	2	0	Median	1.1366	1.322	32.959	4	3	Median	1.1241	1.1147	22.223	2	1	Median	1.0324	1.1283	37.092	2	0	Median	3827100000	1774300000	2052700000	718450000	301550000	416900000	1201100000	585000000	616090000	1048700000	463030000	585690000	858790000	424750000	434040000	17330	1910	16422	105400;105401;105402;105403;105404;105405;105406;105407;105408;105409;105410	142114;142115;142116;142117;142118;142119;142120;142121;142122;142123;142124;142125;142126;142127;142128	142114			15	
FYTGFEINDQTGNALTENEMTTIHYDR	0	Unmodified	3179.4142	0.41420784	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.631	85.049	3	0.0037708	74819	160511_QHF_FH_JSI11i_2	34.04	31.845			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17331	408	16423	105411	142129	142129			1	
FYTLIPHDFGMK	1	Unmodified	1467.7221	0.72205759	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.73		6	7						4	4	4	4	5	78.149	75.46	2;3	6.7328E-06	39556	160513_QHF_FH_JSI10Kac_6	94.122	86.751			0.91997	1.0296	20.882	15	3	Median	1.2316	1.0296	16.544	3	0	Median	0.69581	0.85259	11.486	3	0	Plateau	0.99966	0.99802	15.701	4	0	Median	0.91997	1.032	31.458	5	3	Median	2954400000	1419600000	1534800000	456360000	186650000	269710000	664820000	356240000	308580000	1091400000	524580000	566820000	741850000	352150000	389700000	17332	939	16424	105412;105413;105414;105415;105416;105417;105418;105419;105420;105421;105422;105423;105424;105425;105426;105427;105428	142130;142131;142132;142133;142134;142135;142136;142137;142138;142139;142140;142141;142142;142143;142144;142145;142146;142147;142148;142149;142150;142151;142152;142153;142154;142155;142156;142157;142158;142159;142160;142161;142162;142163;142164;142165;142166	142165			37	
FYTQQWEDYR	0	Unmodified	1434.6204	0.62042929	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.217	52.248	2	0.0070076	44749	160511_QHF_FH_JSI12i_2	61.65	50.499			0.96729	0.70098	20.504	4	4	Linear	1.0047	0.90861	NaN	1	1	Median	0.54929	0.67207	NaN	1	1	Median	0.93278	0.92017	NaN	1	1	Median	1.0031	1.1022	NaN	1	1	Median	182820000	107200000	75625000	47098000	26533000	20565000	51649000	37982000	13668000	47054000	26138000	20916000	37023000	16546000	20476000	17333	2453	16425	105429;105430;105431;105432	142167;142168;142169;142170	142167			4	
FYVEDLK	1	Unmodified	912.45928	0.45928418	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		50.353	49.681	2	0.012734	42930	160511_QHF_FH_JSI11i_2	68.915	48.433			0.94263	0.79606	23.143	5	3	Median	0.94263	0.79606	NaN	1	1	Median	0.59236	0.71995	12.25	2	2	Median	1.1235	1.11	3.261	2	0	Median	NaN	NaN	NaN	0	0	Median	465160000	205780000	259380000	94205000	33385000	60821000	124880000	69256000	55629000	246070000	103140000	142930000	0	0	0	17334	521	16426	105433;105434;105435;105436;105437	142171;142172;142173;142174;142175;142176;142177	142176			7	
FYVHNDIFR	0	Unmodified	1209.5931	0.59309232	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		12	12						8	8	7	9	8	54.393	51.195	2;3	1.0427E-08	44675	160511_QHF_FH_JSI12i_2	136.57	128.34			0.96742	1.0971	23.906	25	6	Median	1.2411	1.0662	13.022	4	2	Linear	0.92168	1.0971	20.458	5	1	Median	0.9913	0.9835	29.904	8	1	Median	0.91938	0.99545	23.6	8	2	Median	3584300000	1642500000	1941900000	355950000	138540000	217410000	700020000	363940000	336080000	1398400000	591530000	806910000	1129900000	548440000	581490000	17335	2381	16427	105438;105439;105440;105441;105442;105443;105444;105445;105446;105447;105448;105449;105450;105451;105452;105453;105454;105455;105456;105457;105458;105459;105460;105461;105462;105463;105464;105465;105466;105467;105468;105469	142178;142179;142180;142181;142182;142183;142184;142185;142186;142187;142188;142189;142190;142191;142192;142193;142194;142195;142196;142197;142198;142199;142200;142201;142202;142203;142204;142205;142206;142207;142208;142209;142210;142211;142212;142213;142214;142215;142216;142217;142218;142219;142220;142221;142222;142223;142224;142225;142226;142227	142191			49	
FYVHNDMFR	0	Unmodified	1227.5495	0.54951295	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.74		7	4						8	3	3	8	5	49.827	46.045	2;3	7.54E-06	40702	160511_QHF_FH_JSI10i_2	90.15	82.225			1.0948	1.1474	15.517	14	2	Median	1.3655	1.173	18.754	3	0	Median	0.99652	1.1933	8.7234	2	0	Median	1.153	1.1131	11.026	5	1	Median	1.0782	1.1517	23.867	4	1	Median	734550000	312120000	422420000	103700000	42422000	61274000	111320000	51394000	59926000	339340000	137470000	201870000	180190000	80844000	99350000	17336	5433	16428	105470;105471;105472;105473;105474;105475;105476;105477;105478;105479;105480;105481;105482;105483;105484;105485;105486;105487;105488	142228;142229;142230;142231;142232;142233;142234;142235;142236;142237;142238;142239;142240;142241;142242;142243;142244;142245;142246	142238			16	
FYVLSMFPYPSGK	1	Unmodified	1534.753	0.75302336	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	16	0									5	2		2	1	91.751	82.607	2;3	2.3054E-05	46470	160513_QHF_FH_JSI11Kac_6	116.77	100.63			1.1871	0.99625	16.126	5	0	Median	1.2961	1.1042	14.866	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1136	1.0541	7.9848	2	0	Median	0.76884	0.79694	NaN	1	0	Median	651070000	301150000	349920000	234670000	111970000	122700000	0	0	0	296800000	122500000	174300000	119600000	66680000	52921000	17337	2610	16429	105489;105490;105491;105492;105493	142247;142248	142248			2	
FYVLSMFPYPSGK	1	Oxidation (M)	1550.7479	0.74793799	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									4			2	2	84.148	74.768	2	1.1538E-12	39766	160513_QHF_FH_JSI12Kac_6	129.89	117.31			0.24946	0.2695	8.4993	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30084	0.27959	9.9013	2	2	Median	0.24484	0.26194	8.7284	2	1	Median	274210000	216440000	57767000	0	0	0	0	0	0	136650000	101340000	35308000	137560000	115100000	22459000	17338	2610	16429	105494;105495;105496;105497	142249;142250;142251;142252	142251		2051	4	
FYVPPTQEDGVDPVEAFAQNVLSK	1	Unmodified	2649.2962	0.29624819	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.83	101.81	3	4.1989E-12	92561	160511_QHF_FH_JSI10i_1	108.55	101.52			1.0004	1.1722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0004	1.1722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159710000	86691000	73017000	0	0	0	159710000	86691000	73017000	0	0	0	0	0	0	17339	2277	16430	105498	142253	142253			1	
FYVQVLHLMNK	1	Unmodified	1390.7431	0.74312738	4169	Q96LT9	RNPC3	RNA-binding protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	78.755	70.392	3	7.7228E-08	38380	160513_QHF_FH_JSI11Kac_6	98.04	76.811			1.2877	1.2492	47.068	4	2	Median	2.0441	1.7448	NaN	1	1	Median	1.8577	2.1876	NaN	1	1	Median	0.89256	0.86334	NaN	1	0	Median	0.84023	0.89437	NaN	1	0	Median	264830000	113090000	151740000	103480000	26614000	76869000	48290000	17002000	31288000	67392000	38978000	28414000	45667000	30496000	15171000	17340	4169	16431	105499;105500;105501;105502	142254;142255;142256	142254			3	
FYVQVLHLMNK	1	Oxidation (M)	1406.738	0.738042	4169	Q96LT9	RNPC3	RNA-binding protein 40	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	71.627	62.002	3	0.0039231	32468	160513_QHF_FH_JSI12Kac_6	57.174	35.181			0.74855	0.80667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74855	0.80667	NaN	1	1	Median	6517500	4150900	2366600	0	0	0	0	0	0	0	0	0	6517500	4150900	2366600	17341	4169	16431	105503	142257	142257		2405	1	
FYVVMWK	1	Unmodified	971.4939	0.49389555	68	CON__Q28194;P07996;P49746;P35442	THBS1;THBS3;THBS2	Thrombospondin-1;Thrombospondin-3;Thrombospondin-2	yes	no	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		77.821	71.755	2	0.018991	39221	160513_QHF_FH_JSI10Kac_6	71.359	57.78		+	0.81872	0.97606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81872	0.97606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97905000	48564000	49341000	0	0	0	97905000	48564000	49341000	0	0	0	0	0	0	17342	68	16432	105504;105505	142258;142259	142259			2	
FYWGHKEILIPVFK	2	Acetyl (K)	1817.9869	0.98686312	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1	By matching		By MS/MS	By matching	16	0									3	1		1	1	91.309	82.137	3	2.5449E-12	46075	160513_QHF_FH_JSI11Kac_6	132.05	117.35			0.3524	0.35175	65.144	3	0	Plateau	1.4441	1.2219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.3524	0.33255	NaN	1	0	Median	0.56334	0.604	NaN	1	0	Median	275270000	205340000	69935000	32462000	14344000	18118000	0	0	0	154220000	119650000	34571000	88589000	71343000	17246000	17343	1798	16433	105506;105507;105508	142260	142260	1812;1813		1	
FYYDGKVMK	2	Acetyl (K)	1191.5634	0.56343168	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	58.952	48.305	2	0.029299	27154	160513_QHF_FH_JSI12Kac_4	48.283	36.435			0.74376	0.79968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74376	0.79968	NaN	1	0	Median	5792500	3445000	2347500	0	0	0	0	0	0	0	0	0	5792500	3445000	2347500	17344	998	16434	105509	142261	142261			1	
FYYLGPFK	1	Unmodified	1033.5273	0.52730417	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	1	3	1	72.627	71.923	2	0.0022609	37546	160513_QHF_FH_JSI11Kac_6	72.234	57.083			0.41227	0.41048	65.893	5	5	Median	0.28318	0.24393	NaN	1	1	Median	0.41227	0.50061	NaN	1	1	Median	0.2342	0.22745	83.492	2	2	Median	0.59295	0.66874	NaN	1	1	Median	809330000	635280000	174050000	182030000	143850000	38187000	199570000	163360000	36209000	341380000	271620000	69760000	86344000	56452000	29891000	17345	5745	16435	105510;105511;105512;105513;105514;105515	142262;142263;142264;142265;142266;142267	142264			6	
GAAAAAAASGAAGGGGGGAGAGAPGGGR	0	Unmodified	1951.9209	0.92086184	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	3	1	19.316	18.917	2;3	6.0815E-42	16238	160511_QHF_FH_JSI11i_1	116.74	110.01			1.2844	1.33	13.09	6	5	Median	1.8132	1.4559	NaN	1	1	Median	0.99077	1.174	14.959	2	2	Median	1.4125	1.3792	14.743	2	2	Median	1.2965	1.3555	NaN	1	0	Median	312970000	139320000	173650000	39172000	16629000	22544000	106310000	54648000	51664000	108280000	42242000	66038000	59205000	25799000	33406000	17346	3028	16436	105516;105517;105518;105519;105520;105521;105522	142268;142269;142270;142271;142272;142273;142274;142275	142269			8	
GAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAK	1	Unmodified	2993.5279	0.52787289	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		98.01	97.793	4	0.064589	85585	160511_QHF_FH_JSI11i_2	3.9588	1.583			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124990000	47387000	77600000	0	0	0	0	0	0	124990000	47387000	77600000	0	0	0	17347	3028	16437	105523	142276	142276			1	
GAAAAATGQPGTAPAGTPGAPPLAGMAIVK	1	Unmodified	2571.3479	0.3479066	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	13									3	3	4	3	76.023	75.54	2;3;4	9.7022E-38	68958	160511_QHF_FH_JSI12i_1	186.85	182.54			0.96049	0.97073	10.066	12	0	Median	1.176	0.96695	3.1454	3	0	Median	0.87101	1.0287	8.7519	3	0	Median	1.0497	1.0098	13.504	3	0	Median	0.92028	0.87114	6.0797	3	0	Plateau	2721900000	1415900000	1306000000	608220000	315040000	293180000	681770000	392260000	289510000	737870000	343330000	394540000	694020000	365230000	328800000	17348	2380	16438	105524;105525;105526;105527;105528;105529;105530;105531;105532;105533;105534;105535;105536	142277;142278;142279;142280;142281;142282;142283;142284;142285;142286;142287;142288;142289;142290;142291;142292;142293;142294;142295;142296;142297;142298;142299;142300;142301;142302;142303;142304;142305;142306;142307;142308	142289			32	
GAAAAATGQPGTAPAGTPGAPPLAGMAIVK	1	Oxidation (M)	2587.3428	0.34282122	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	62.468	61.751	3	8.4432E-07	56033	160511_QHF_FH_JSI11i_1	60.814	52.917			0.67929	0.69168	39.349	3	2	Median	1.5741	1.3239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6694	0.65102	NaN	1	1	Median	0.67929	0.69168	NaN	1	1	Median	94014000	65300000	28714000	32889000	19909000	12979000	0	0	0	34212000	25442000	8770100	26914000	19949000	6964400	17349	2380	16438	105537;105538;105539;105540	142309;142310;142311;142312	142309		1932	4	
GAAAHPDSEEQQQR	0	Unmodified	1522.676	0.67604668	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.28	2.9	8	8	1				1			4	4	4	6	5.1979	4.4693	2;3	5.879E-136	2728	160511_QHF_FH_JSI11i_1	259.7	249.65			1.0127	1.0711	11.01	18	2	Median	1.2541	1.0481	4.6127	4	2	Median	0.92049	1.1101	3.0895	4	0	Median	1.0638	1.0567	9.4411	4	0	Median	0.96291	1.0399	15.104	6	0	Median	3222300000	1608400000	1613900000	585340000	258880000	326460000	888210000	453670000	434540000	961730000	488720000	473010000	787050000	407170000	379870000	17350	5616	16439	105541;105542;105543;105544;105545;105546;105547;105548;105549;105550;105551;105552;105553;105554;105555;105556;105557;105558	142313;142314;142315;142316;142317;142318;142319;142320;142321;142322;142323;142324;142325;142326;142327;142328;142329;142330;142331	142313			19	
GAAAIEAEDREEEEGEEEK	1	Unmodified	2089.8924	0.89236621	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	22.957	22.292	3	6.1891E-06	19311	160511_QHF_FH_JSI11i_1	88.264	78.606			0.88795	0.9554	18.953	5	2	Median	0.88795	0.73398	NaN	1	1	Median	0.83547	1.0019	6.7199	2	1	Median	0.69832	0.67885	NaN	1	0	Median	0.93141	0.95751	NaN	1	0	Median	149370000	71435000	77931000	25677000	10808000	14870000	45788000	19810000	25978000	34125000	15855000	18270000	43776000	24962000	18814000	17351	3832	16440	105559;105560;105561;105562;105563;105564	142332;142333;142334;142335;142336	142332			5	
GAAAIILTYDVNHR	0	Unmodified	1512.8049	0.80487601	5094	Q9NX57	RAB20	Ras-related protein Rab-20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	3	1	66.133	57.09	2;3	3.1288E-37	30989	160513_QHF_FH_JSI11Kac_6	185.08	164.21			1.099	1.0426	4.9807	5	1	Median	1.1694	1.0114	NaN	1	0	Median	0.84359	1.0092	4.6933	2	0	Median	1.1222	1.0794	4.9106	2	1	Median	NaN	NaN	NaN	0	0	Median	156420000	83981000	72441000	9126600	4369800	4756700	103000000	55929000	47075000	41799000	21190000	20609000	2492700	2492700	0	17352	5094	16441	105565;105566;105567;105568;105569;105570;105571	142337;142338;142339;142340;142341;142342;142343;142344;142345	142337			9	
GAAANPENEDQQQR	0	Unmodified	1526.671	0.67096131	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		7.7977	7.6806	2	2.4516E-07	5564	160511_QHF_FH_JSI10i_1	93.258	85.861			1.6552	1.5866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6552	1.5866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31024000	10896000	20128000	0	0	0	0	0	0	31024000	10896000	20128000	0	0	0	17353	5628	16442	105572;105573	142346;142347	142347			2	
GAAAQGQTQTVAAQAQALAAQAAAAAHAAQAHR	0	Unmodified	3080.5612	0.5612387	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				85.944	84.72	4	8.6398E-17	69518	160511_QHF_FH_JSI9i_3	89.186	77.979			1.208	0.95988	NaN	1	1	Median	1.208	0.95988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29947000	17619000	12327000	29947000	17619000	12327000	0	0	0	0	0	0	0	0	0	17354	4422	16443	105574	142348	142348			1	
GAAATTTTTEHR	0	Unmodified	1215.5844	0.58437813	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.01	4	8	4				5	4		3	7	8	7	5.0763	1.2836	2;3	7.7102E-24	1772	160513_QHF_FH_JSI11Kac_4	177.06	140.51			1.0712	1.0793	19.223	22	2	Median	1.0625	0.89819	8.1873	2	0	Median	0.88699	1.0651	30.902	6	1	Median	1.0813	1.0621	6.7393	7	1	Median	1.1013	1.1266	15.67	7	0	Median	1475200000	717390000	757840000	115960000	59548000	56412000	295710000	151790000	143910000	458690000	226890000	231800000	604880000	279160000	325710000	17355	4714	16444	105575;105576;105577;105578;105579;105580;105581;105582;105583;105584;105585;105586;105587;105588;105589;105590;105591;105592;105593;105594;105595;105596;105597;105598;105599	142349;142350;142351;142352;142353;142354;142355;142356;142357;142358;142359;142360;142361;142362;142363;142364;142365;142366;142367;142368;142369;142370;142371;142372;142373	142360			25	
GAAFGFNVIATR	0	Unmodified	1222.6459	0.64585618	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	2	1	1		72.612	69.176	2	4.2003E-19	36742	160513_QHF_FH_JSI11Kac_6	155.15	126.75			1.0935	1.0079	4.3507	4	3	Median	1.1864	0.98271	7.0682	2	2	Median	0.88951	1.0126	NaN	1	1	Median	1.0636	1.0032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	190750000	85713000	105040000	92727000	37490000	55237000	34084000	18414000	15670000	63941000	29808000	34133000	0	0	0	17356	2997	16445	105600;105601;105602;105603	142374;142375;142376;142377	142375			4	
GAAGALLVYDITR	0	Unmodified	1318.7245	0.72450043	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.59		5	6					3	7	6	6	6	3	77.268	72.696	2;3	2.5628E-40	39126	160513_QHF_FH_JSI10Kac_6	194.6	149.46			0.95029	0.95297	35.722	21	8	Median	1.211	1.0254	29.594	6	3	Median	0.77104	0.93593	47.237	6	3	Median	0.95552	0.90602	35.177	6	2	Median	0.95029	0.96988	15.322	3	0	Median	3184100000	1650100000	1533900000	658420000	298180000	360240000	635040000	366090000	268950000	972900000	500090000	472810000	917720000	485780000	431940000	17357	1930	16446	105604;105605;105606;105607;105608;105609;105610;105611;105612;105613;105614;105615;105616;105617;105618;105619;105620;105621;105622;105623;105624	142378;142379;142380;142381;142382;142383;142384;142385;142386;142387;142388;142389;142390;142391;142392;142393;142394;142395;142396;142397;142398;142399;142400;142401;142402;142403;142404;142405;142406;142407	142406			30	
GAAGALLVYDITRR	0	Unmodified	1474.8256	0.82561145	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	73.763	65.3	2;3	7.7939E-72	35899	160513_QHF_FH_JSI10Kac_6	214.88	180.49			0.9273	1.031	20.633	10	4	Median	1.164	1.0075	13.075	2	0	Median	0.9273	1.0936	6.488	4	4	Median	1.0305	0.97377	21.919	2	0	Median	0.63855	0.69256	14.953	2	0	Median	3195200000	1666100000	1529100000	429590000	229160000	200430000	2298200000	1185300000	1112900000	366640000	192670000	173980000	100750000	59010000	41738000	17358	1930	16447	105625;105626;105627;105628;105629;105630;105631;105632;105633;105634	142408;142409;142410;142411;142412;142413;142414;142415;142416	142416			8	
GAAGALLVYDITSR	0	Unmodified	1405.7565	0.75652884	1173	P20338	RAB4A	Ras-related protein Rab-4A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.84		2	9						4	5	4	2	4	78.195	75.181	2;3	6.5906E-24	38894	160513_QHF_FH_JSI11Kac_6	154.66	137.63			0.96842	0.949	34.144	14	3	Median	1.3858	1.1571	41.817	5	2	Median	0.8158	0.96696	31.493	4	0	Median	0.9952	0.949	2.8268	2	0	Median	0.82707	0.83511	41.562	3	1	Median	611210000	317580000	293630000	113700000	51349000	62347000	187630000	104510000	83118000	140000000	76725000	63273000	169880000	84991000	84893000	17359	1173	16448	105635;105636;105637;105638;105639;105640;105641;105642;105643;105644;105645;105646;105647;105648;105649	142417;142418;142419;142420;142421;142422;142423;142424;142425;142426;142427;142428;142429;142430;142431;142432;142433;142434;142435;142436;142437;142438;142439	142422			22	
GAAGALMVYDITR	0	Oxidation (M)	1352.6758	0.67583567	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		15.2	0.786							2	3	4	3	4	2		66.502	56.256	2	1.2913E-13	29396	160513_QHF_FH_JSI9Kac_5	132.78	114.91			0.63017	0.66395	19.448	6	4	Median	0.8019	0.68182	37.951	2	1	Median	0.61453	0.72339	6.5862	2	2	Median	0.62212	0.60324	8.0197	2	1	Median	NaN	NaN	NaN	0	0	Median	46740000	30651000	16089000	14943000	9049100	5894200	14887000	9529100	5358300	16910000	12073000	4836500	0	0	0	17360	1938	16449	105650;105651;105652;105653;105654;105655;105656;105657;105658	142440;142441;142442;142443;142444;142445;142446;142447;142448;142449;142450	142440		1601	11	
GAAGALMVYDITR	0	Unmodified	1336.6809	0.68092105	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	74.485	65.82	2	2.5628E-40	35708	160513_QHF_FH_JSI11Kac_6	194.6	165.9			1.0829	0.97024	21.152	5	2	Median	1.1119	0.9666	4.7417	2	2	Median	0.588	0.70894	NaN	1	0	Median	0.9978	0.97024	NaN	1	0	Median	1.2293	1.2841	NaN	1	0	Median	351440000	177470000	173970000	151790000	68652000	83137000	64136000	37938000	26199000	98858000	54733000	44126000	36656000	16144000	20512000	17361	1938	16449	105659;105660;105661;105662;105663	142451;142452;142453;142454;142455;142456	142452			6	
GAAGALMVYDITRR	0	Unmodified	1492.782	0.78203208	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	3	1		67.466	59.314	2;3	3.428E-10	32609	160513_QHF_FH_JSI10Kac_6	163.38	127.44			0.70032	0.87517	20.132	3	1	Plateau	0.70032	0.58981	NaN	1	1	Median	0.70106	0.82087	9.0594	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163510000	89992000	73517000	31574000	18196000	13377000	131930000	71796000	60139000	0	0	0	0	0	0	17362	1938	16450	105664;105665;105666;105667;105668	142457;142458;142459;142460;142461;142462	142462			6	
GAAGEQLSFAAGLVYSLSLLQATLHR	0	Unmodified	2672.4286	0.42859976	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	100.53	92.956	3	4.1985E-173	55659	160513_QHF_FH_JSI10Kac_6	276.73	253.83			0.9591	1.0265	1.19	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85043	1.0179	NaN	1	0	Median	1.0816	1.0351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1164600000	628350000	536290000	0	0	0	524650000	290670000	233980000	639980000	337680000	302300000	0	0	0	17363	2516	16451	105669;105670;105671	142463;142464;142465	142465			3	
GAAGFSIGK	1	Unmodified	806.42865	0.42865276	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.71	2	1						2		1	1	2	1	33.286	29.059	2	0.0021298	24471	160511_QHF_FH_JSI11i_2	75.213	60.437			0.67296	0.66106	10.18	5	1	Median	0.76033	0.63568	NaN	1	0	Median	0.62984	0.72233	NaN	1	0	Median	0.62852	0.61957	9.1678	2	1	Median	0.71224	0.74918	NaN	1	0	Median	138430000	77713000	60721000	4349500	2181800	2167700	26691000	15522000	11169000	85831000	48433000	37397000	21563000	11576000	9987000	17364	2108	16452	105672;105673;105674;105675;105676	142466;142467;142468;142469;142470	142469			4	
GAAGFSIGKATDR	1	Acetyl (K)	1291.6521	0.65206377	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		54.335	43.652	2	0.0011504	25467	160513_QHF_FH_JSI11Kac_4	80.706	64.166			0.84236	0.88993	60.805	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1491	1.368	NaN	1	0	Median	0.61752	0.57893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17871000	8031900	9839300	0	0	0	16632000	7295600	9336900	1238800	736360	502450	0	0	0	17365	2108	16453	105677;105678	142471	142471	2214		1	
GAAGGAEQPGPGGR	0	Unmodified	1180.5585	0.55849773	4270	Q99447	PCYT2	Ethanolamine-phosphate cytidylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			7.6304	7.1906	2	8.0426E-10	4727	160511_QHF_FH_JSI9i_1	147.91	135.86			0.98011	0.96738	10.02	2	0	Median	1.1017	0.90121	NaN	1	0	Median	0.87196	1.0384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111360000	63593000	47772000	74297000	42126000	32171000	37067000	21466000	15601000	0	0	0	0	0	0	17366	4270	16454	105679;105680	142472;142473	142473			1	
GAAGRPLELSDFR	0	Unmodified	1387.7208	0.72081203	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		47.248	46.189	3	1.3349E-06	37988	160511_QHF_FH_JSI9i_3	121.28	88.674			1.184	1.1073	12.884	3	1	Median	1.2954	1.04	NaN	1	0	Median	1.1598	1.3324	NaN	1	1	Median	1.184	1.1073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1268500000	661270000	607200000	636400000	355380000	281020000	535520000	251140000	284380000	96548000	54755000	41793000	0	0	0	17367	1527	16455	105681;105682;105683	142474;142475;142476	142476			3	
GAAGSSALAR	0	Unmodified	859.45118	0.45117911	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2	0		3								1	1	1		8.5239	8.1412	2	0.052879	5974	160511_QHF_FH_JSI9i_2	47.96	36.004			0.92425	0.92078	15.228	3	0	Median	1.37	1.1324	NaN	1	0	Median	0.68643	0.84144	NaN	1	0	Median	0.92425	0.92078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116080000	57860000	58223000	34875000	13211000	21664000	34920000	20444000	14476000	46289000	24206000	22083000	0	0	0	17368	2985	16456	105684;105685;105686	142477	142477			0	
GAAHSASEEVR	0	Unmodified	1112.521	0.52104959	3992	Q96BS2	TESC	Calcineurin B homologous protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.137	11.739	2	0.017354	9616	160511_QHF_FH_JSI12i_1	44.377	8.5052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17369	3992	16457	105687	142478	142478			1	
GAAIPAK	1	Unmodified	626.37516	0.37516062	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.43	4	4	3		1	3	2			3	4	5	5	11.488	8.6436	2	0.0080097	7448	160511_QHF_FH_JSI10i_1	85.306	44.386			0.94377	1.0177	10.3	17	2	Median	1.3901	1.1649	19.661	3	1	Median	0.84007	1.0012	8.0989	4	0	Median	1.0566	1.0199	6.7145	5	1	Median	0.90119	1.0035	8.9589	5	0	Median	18446000000	9059400000	9386200000	3705600000	1712000000	1993500000	4899600000	2574100000	2325500000	4824100000	2297000000	2527200000	5016300000	2476300000	2540000000	17370	1154	16458	105688;105689;105690;105691;105692;105693;105694;105695;105696;105697;105698;105699;105700;105701;105702;105703;105704	142479;142480;142481;142482;142483;142484;142485;142486;142487;142488;142489;142490;142491;142492;142493;142494;142495;142496;142497;142498;142499;142500;142501;142502	142486			24	
GAAIPAKGAK	2	Acetyl (K)	924.53927	0.53926584	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					1	1	2	27.948	20.276	2	0.00031546	11999	160513_QHF_FH_JSI12Kac_3	94.302	78.153			1.0359	1.1491	17.016	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94488	1.1225	NaN	1	0	Median	1.4689	1.4585	NaN	1	0	Median	0.99911	1.0663	13.902	2	0	Median	41164000	19555000	21609000	0	0	0	14026000	6420400	7605700	6457200	2607900	3849300	20680000	10527000	10154000	17371	1154	16459	105705;105706;105707;105708	142503;142504;142505;142506;142507;142508;142509	142506	1012;1013		7	
GAAKEAAGK	2	Acetyl (K)	843.44503	0.4450311	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					2	1	1	6.3525	-0.89751	2	0.00011905	2298	160513_QHF_FH_JSI10Kac_3	116.05	49.978			0.74796	0.84182	47.165	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78772	0.92426	7.1066	2	0	Median	0.37687	0.34814	NaN	1	0	Median	0.73847	0.80624	NaN	1	0	Median	18187000	9718600	8468700	0	0	0	12075000	6170100	5905300	3467200	2265600	1201600	2644700	1282900	1361900	17372	2161	16460	105709;105710;105711;105712	142510;142511;142512	142511	2272		3	
GAALDVHESEPFSFAQGPLK	1	Unmodified	2099.0324	0.032369346	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	4	3	76.125	75.422	3	2.1792E-25	65426	160511_QHF_FH_JSI12i_3	174.78	167.39			1.0364	1.0797	9.02	9	7	Median	1.1897	1.0096	9.5004	2	2	Median	1.0253	1.2307	NaN	1	0	Median	1.0364	1.0426	8.8183	3	3	Median	0.96003	1.0915	8.1796	3	2	Median	895150000	434560000	460590000	153250000	64533000	88717000	91842000	45247000	46595000	299510000	142170000	157340000	350550000	182620000	167940000	17373	1882	16461	105713;105714;105715;105716;105717;105718;105719;105720;105721;105722	142513;142514;142515;142516;142517;142518;142519;142520;142521;142522;142523;142524	142524			12	
GAALDVHESEPFSFSQGPLK	1	Unmodified	2115.0273	0.027283968	2395	Q13363	CTBP1	C-terminal-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	72.905	72.312	3	2.1155E-33	62807	160511_QHF_FH_JSI12i_3	187.39	177.65			0.99028	0.84376	22.007	5	0	Plateau	NaN	NaN	NaN	0	0	Median	0.52781	0.63428	NaN	1	0	Median	0.7486	0.718	22.826	2	0	Median	0.91963	0.95682	4.3541	2	0	Median	403670000	240800000	162860000	0	0	0	52815000	38016000	14799000	142480000	82221000	60258000	208370000	120560000	87808000	17374	2395	16462	105723;105724;105725;105726;105727	142525;142526;142527;142528;142529;142530;142531	142531			5	
GAALITAVACR	0	Unmodified	1101.5965	0.59646314	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		56.239	46.511	2	0.001947	25543	160513_QHF_FH_JSI10Kac_6	72.928	55.08			0.83551	0.80831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83551	0.80831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8664100	4747300	3916800	0	0	0	0	0	0	8664100	4747300	3916800	0	0	0	17375	1785	16463	105728;105729	142532;142533	142533			2	
GAAMVTAVAYR	0	Unmodified	1108.5699	0.56991404	1785;1155	P52789;P19367	HK2;HK1	Hexokinase-2;Hexokinase-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.06	6.46		3	5					4	4	4	4	5	3	44.226	38.948	2	2.1036E-59	33086	160511_QHF_FH_JSI12i_3	231.2	219.48			0.99248	1.0809	13.933	16	2	Plateau	1.2413	1.058	12.129	4	0	Median	0.837	1.0254	6.8755	4	0	Median	0.99438	0.97545	13.004	5	2	Median	0.75428	0.82919	17.03	3	0	Median	1111500000	550320000	561150000	212810000	99579000	113230000	256480000	155190000	101300000	492410000	224790000	267620000	149760000	70764000	78997000	17376	1785;1155	16464	105730;105731;105732;105733;105734;105735;105736;105737;105738;105739;105740;105741;105742;105743;105744;105745	142534;142535;142536;142537;142538;142539;142540;142541;142542;142543;142544;142545;142546;142547;142548;142549;142550;142551;142552;142553;142554;142555	142552			21	
GAAMVTAVAYR	0	Oxidation (M)	1124.5648	0.56482866	1785;1155	P52789;P19367	HK2;HK1	Hexokinase-2;Hexokinase-1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.487							5	8		2	4	4	3	36.932	27.301	2	1.3725E-07	15772	160513_QHF_FH_JSI11Kac_5	115.71	103.19			0.97024	1.0401	10.847	13	0	Median	1.2025	1.0174	4.3615	2	0	Median	0.86268	1.0228	15.241	4	0	Median	1.0148	1.0672	6.6714	4	0	Linear	1.0342	1.1257	9.9951	3	0	Median	77510000	37551000	39959000	15579000	6744800	8834600	20177000	10349000	9827700	34725000	17019000	17706000	7028800	3437800	3591000	17377	1785;1155	16464	105746;105747;105748;105749;105750;105751;105752;105753;105754;105755;105756;105757;105758	142556;142557;142558;142559;142560;142561;142562;142563;142564;142565;142566;142567;142568;142569;142570;142571	142564		788	16	
GAAPAPPGK	1	Unmodified	764.41809	0.41808807	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	4	1	2	10.932	8.2411	2	6.2105E-05	7171	160511_QHF_FH_JSI11i_1	97.068	70.106			1.1026	1.0273	24.644	6	2	Median	1.1724	0.95357	NaN	1	0	Median	0.74482	0.81595	37.391	3	2	Median	1.1742	1.15	NaN	1	0	Median	1.037	1.1068	NaN	1	0	Median	1355900000	677850000	678070000	290550000	123660000	166890000	323640000	185540000	138110000	391360000	190410000	200950000	350370000	178240000	172130000	17378	2409	16465	105759;105760;105761;105762;105763;105764;105765;105766	142572;142573;142574;142575;142576;142577;142578;142579;142580	142572			9	
GAAPAPPRK	1	Unmodified	863.49774	0.49773538	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.5	0.5		4	4							4	3	1		6.8378	6.3779	2;3	0.0016895	4240	160511_QHF_FH_JSI9i_3	83.377	46.283			0.96442	0.8847	10.334	8	2	Median	1.1198	0.91961	11.858	4	1	Median	0.74329	0.84882	8.5066	3	1	Median	0.86505	0.85882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	703060000	374060000	329000000	409810000	209010000	200800000	263280000	149980000	113310000	29967000	15074000	14893000	0	0	0	17379	2409	16466	105767;105768;105769;105770;105771;105772;105773;105774	142581;142582;142583;142584;142585;142586	142584			6	
GAAPNVVYTYTGK	1	Unmodified	1339.6772	0.67721588	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			2	4	3	4	50.094	44.686	2	6.2557E-12	25666	160513_QHF_FH_JSI11Kac_4	119.16	108.33			1.0459	1.0883	16.743	12	3	Median	1.3708	1.165	25.408	2	1	Median	0.94261	1.1115	12.462	4	1	Median	1.1778	1.1457	13.598	3	1	Median	0.98347	1.053	17.884	3	0	Median	1539000000	729750000	809210000	344160000	171050000	173110000	430950000	216970000	213980000	488660000	228540000	260120000	275180000	113180000	162000000	17380	2746	16467	105775;105776;105777;105778;105779;105780;105781;105782;105783;105784;105785;105786;105787	142587;142588;142589;142590;142591;142592;142593;142594;142595;142596;142597;142598;142599;142600;142601;142602;142603;142604;142605;142606;142607;142608;142609	142599			23	
GAAPNVVYTYTGKR	1	Acetyl (K)	1537.7889	0.7888916	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	60.421	49.621	2	0.0017077	27251	160513_QHF_FH_JSI10Kac_4	90.685	74.795			0.47474	0.45755	51.009	3	1	Median	NaN	NaN	NaN	0	0	Median	0.25169	0.29455	NaN	1	1	Median	0.47474	0.45755	NaN	1	0	Median	0.75412	0.81451	NaN	1	0	Median	5994200	4408400	1585700	0	0	0	1754000	1491600	262410	2761500	2029200	732340	1478600	887620	590990	17381	2746	16468	105788;105789;105790	142610;142611;142612	142610	2662		3	
GAAPPPPPVPR	0	Unmodified	1054.5924	0.59236404	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	30.625	30.025	2	0.03399	26709	160511_QHF_FH_JSI11i_1	39.022	16.282			0.82917	0.92574	19.412	4	0	Median	0.80987	0.68621	NaN	1	0	Median	0.83256	0.97397	NaN	1	0	Median	1.1312	1.0793	NaN	1	0	Median	0.82581	0.8799	NaN	1	0	Median	171760000	92580000	79183000	31112000	17200000	13913000	41809000	24979000	16830000	38591000	20932000	17658000	60251000	29469000	30781000	17382	2255	16469	105791;105792;105793;105794	142613;142614	142613			1	
GAAPTPPGK	1	Unmodified	794.42865	0.42865276	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.89	5.61	3				2	3	1			1	1	3	4	12.719	7.6998	2	0.0002328	7786	160511_QHF_FH_JSI12i_1	84.568	9.3551			0.94047	1.0129	17.298	9	1	Median	1.1529	0.95385	NaN	1	0	Median	0.69268	0.81854	NaN	1	1	Median	1.1108	1.0684	11.516	3	0	Median	0.93591	1.0169	22.971	4	0	Median	1644600000	818500000	826060000	555280000	252550000	302740000	3274900	1905800	1369200	614400000	320890000	293510000	471600000	243160000	228450000	17383	2409	16470	105795;105796;105797;105798;105799;105800;105801;105802;105803	142615;142616;142617;142618;142619;142620;142621;142622;142623;142624	142618			10	
GAAVDEYFRQPVVDTFDIR	0	Unmodified	2197.0804	0.080382171	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.037	85.356	3	3.5367E-06	75231	160511_QHF_FH_JSI9i_2	76.768	60.469			1.2393	1.1774	12.741	4	3	Median	1.2847	1.0628	NaN	1	1	Median	0.86934	1.0545	NaN	1	0	Median	1.33	1.3342	NaN	1	1	Median	1.1955	1.3044	NaN	1	1	Median	197450000	108890000	88559000	25639000	11904000	13735000	75751000	50044000	25707000	56827000	27381000	29447000	39233000	19562000	19671000	17384	3371	16471	105804;105805;105806;105807	142625;142626;142627;142628	142626			4	
GAAVIKAR	1	Acetyl (K)	826.50249	0.5024864	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		22.991	14.286	2	0.0011501	10157	160513_QHF_FH_JSI11Kac_4	92.677	43.618			0.19582	0.21072	50.382	2	2	Median	NaN	NaN	NaN	0	0	Median	0.25497	0.3009	NaN	1	1	Median	0.15039	0.14756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16477000	13950000	2526800	0	0	0	3782000	3337700	444250	12695000	10613000	2082500	0	0	0	17385	1503	16472	105808;105809	142629;142630	142630	1523		2	
GAAVNGPVSHSSLTK	1	Unmodified	1423.7419	0.7419414	4732	Q9H582	ZNF644	Zinc finger protein 644	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		19.732	19.732	3	6.8546E-05	16547	160511_QHF_FH_JSI11i_3	72.175	61.231			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17386	4732	16473	105810;105811	142631;142632	142632			2	
GAAVNLTLVTPEK	1	Unmodified	1311.7398	0.73981614	4796	Q9H936;Q9H1K4	SLC25A22;SLC25A18	Mitochondrial glutamate carrier 1;Mitochondrial glutamate carrier 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	60.684	60.191	2	0.001358	54562	160511_QHF_FH_JSI11i_1	63.624	39.594			0.86	0.90499	11.356	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.7692	0.90499	NaN	1	1	Median	0.78147	0.77491	NaN	1	0	Median	0.94643	0.96677	NaN	1	0	Median	96368000	45468000	50900000	0	0	0	37791000	19221000	18571000	26922000	9840800	17081000	31654000	16406000	15248000	17387	4796	16474	105812;105813;105814	142633;142634;142635	142633			3	
GAAWGVLLVGGPGSGK	1	Unmodified	1424.7776	0.77759863	5400	Q9ULJ7	ANKRD50	Ankyrin repeat domain-containing protein 50	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		81.599	72.285	2	0.023257	40892	160513_QHF_FH_JSI10Kac_6	50.786	36.096			1.0552	1.0366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0552	1.0366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15346000	7837100	7509300	0	0	0	0	0	0	15346000	7837100	7509300	0	0	0	17388	5400	16475	105815;105816	142636;142637	142637			1	
GAAYGLAGLVK	1	Unmodified	1018.5811	0.58113065	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.54	3	4	4				2	2		3	5	2	5	58.325	57.569	2	6.2537E-13	49791	160511_QHF_FH_JSI11i_2	174.27	163.4			0.92491	0.99642	8.9051	6	1	Median	1.3909	1.185	NaN	1	1	Median	0.81784	0.96902	5.5391	2	0	Median	1.0268	1.0088	3.3367	2	0	Median	0.8295	0.93168	NaN	1	0	Median	811060000	414630000	396430000	172020000	82734000	89282000	197040000	97622000	99419000	293090000	157050000	136030000	148920000	77221000	71698000	17389	3860	16476	105817;105818;105819;105820;105821;105822;105823;105824;105825;105826;105827;105828;105829;105830;105831	142638;142639;142640;142641;142642;142643;142644;142645;142646;142647;142648;142649;142650;142651;142652;142653	142648			16	
GACASHVSTMASFLK	1	Unmodified	1565.733	0.73303298	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	2	2	3	2	51.084	49.248	2;3	1.9482E-21	43337	160511_QHF_FH_JSI11i_3	176.29	158.42			1.0032	1.0486	23.725	9	2	Median	1.5593	1.3075	5.1949	2	1	Median	0.88332	1.0246	3.2737	2	0	Median	0.77039	0.73137	28.331	3	1	Median	1.0384	1.0624	6.7482	2	0	Median	710990000	364540000	346450000	57912000	23795000	34118000	100380000	53358000	47020000	313620000	177030000	136590000	239080000	110360000	128720000	17390	5346	16477	105832;105833;105834;105835;105836;105837;105838;105839;105840	142654;142655;142656;142657;142658;142659;142660;142661;142662;142663;142664;142665;142666;142667;142668	142655			15	
GACPKSYGFNAAR	1	Acetyl (K)	1439.6616	0.66158259	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		46.734	36.369	2	0.0010298	21597	160513_QHF_FH_JSI11Kac_4	81.865	75.481			0.15474	0.15457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15474	0.15457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4282300	3436000	846310	0	0	0	0	0	0	4282300	3436000	846310	0	0	0	17391	1778	16478	105841	142669	142669	1792		1	
GADDAMESSK	1	Unmodified	1009.4022	0.40223959	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.4572	7.3401	2	0.0083154	5030	160511_QHF_FH_JSI11i_1	60.064	47.027			0.56225	0.54607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56225	0.54607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33943000	21478000	12465000	0	0	0	0	0	0	33943000	21478000	12465000	0	0	0	17392	3036	16479	105842	142670	142670			1	
GADDAMESSKPGPVQVVLVQK	2	Unmodified	2154.0991	0.099068703	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.707	5	2	1							2	1	2	3	59.193	58.638	3	1.8503E-22	53428	160511_QHF_FH_JSI12i_1	155.87	140.28			0.83259	0.86524	50.876	7	5	Median	1.0318	0.87058	NaN	1	1	Median	0.36186	0.41925	NaN	1	0	Median	0.93163	0.93914	21.039	2	1	Median	0.82883	0.86524	70.516	3	3	Median	636880000	374820000	262050000	39870000	19035000	20835000	100990000	70968000	30020000	182360000	93948000	88410000	313660000	190870000	122790000	17393	3036	16480	105843;105844;105845;105846;105847;105848;105849;105850	142671;142672;142673;142674;142675;142676;142677;142678;142679	142674			9	
GADELPYLR	0	Unmodified	1032.524	0.52400971	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	50.093	49.592	2	0.0014046	44692	160511_QHF_FH_JSI10i_1	69.198	52.658			1.4338	1.7242	24.582	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4338	1.7242	NaN	1	0	Median	1.2022	1.1677	NaN	1	1	Median	1.7439	1.8395	NaN	1	0	Median	225780000	92207000	133570000	0	0	0	78911000	32482000	46429000	96567000	36877000	59691000	50300000	22848000	27452000	17394	449	16481	105851;105852;105853	142680;142681;142682	142682			3	
GADFLVTEVENGGSLGSK	1	Unmodified	1778.8687	0.86865806	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.17	10	8	8				4	3		6	8	10	9	76.953	74.202	2;3	3.2554E-209	66692	160511_QHF_FH_JSI9i_2	326.06	303.14			0.99218	0.95117	56.829	33	8	Median	1.1726	0.96173	23.495	6	0	Median	0.82664	0.96101	19.307	8	1	Median	0.97052	0.92492	11.88	10	5	Median	1.006	1.0295	105.02	9	2	Median	21805000000	10651000000	11154000000	3565900000	1641000000	1924900000	5387200000	3077700000	2309500000	7855200000	3884200000	3971000000	4996600000	2048200000	2948400000	17395	1055	16482	105854;105855;105856;105857;105858;105859;105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882;105883;105884;105885;105886	142683;142684;142685;142686;142687;142688;142689;142690;142691;142692;142693;142694;142695;142696;142697;142698;142699;142700;142701;142702;142703;142704;142705;142706;142707;142708;142709;142710;142711;142712;142713;142714;142715;142716;142717;142718;142719;142720;142721;142722;142723;142724;142725;142726;142727;142728;142729;142730;142731;142732;142733;142734;142735;142736;142737;142738;142739;142740;142741;142742;142743;142744;142745;142746;142747;142748;142749;142750;142751;142752;142753	142728			71	
GADFLVTEVENGGSLGSKK	2	Unmodified	1906.9636	0.96362108	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.07	2	8	6					1		4	4	6	3	68.111	66.817	2;3	6.4648E-54	59558	160511_QHF_FH_JSI11i_3	232.5	209.58			0.86083	0.82255	14.252	16	1	Median	1.0271	0.84907	9.391	4	0	Median	0.72288	0.77734	5.7089	4	0	Linear	0.83821	0.81957	17.144	5	1	Median	0.96837	1.0464	3.2896	3	0	Plateau	7449600000	3661400000	3788200000	646260000	354070000	292190000	866600000	485180000	381420000	2700200000	1334700000	1365500000	3236500000	1487400000	1749100000	17396	1055	16483	105887;105888;105889;105890;105891;105892;105893;105894;105895;105896;105897;105898;105899;105900;105901;105902;105903	142754;142755;142756;142757;142758;142759;142760;142761;142762;142763;142764;142765;142766;142767;142768;142769;142770;142771;142772;142773;142774;142775;142776;142777;142778;142779;142780;142781;142782;142783;142784;142785;142786;142787	142761			34	
GADGMILGGPQSDSDTDAQR	0	Unmodified	1989.8698	0.86979705	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		43.678	43.279	2	9.6546E-17	38849	160511_QHF_FH_JSI10i_1	121.76	111.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17397	3586	16484	105904;105905	142788;142789	142789			2	
GADILAYPPVVAGGNR	0	Unmodified	1568.8311	0.83109076	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.026	69.476	2	0.00034396	63207	160511_QHF_FH_JSI11i_1	83	48.468			1.9635	3.0765	53.493	4	4	Linear	1.3852	1.1195	NaN	1	1	Median	0.96642	1.1488	NaN	1	1	Median	2.7831	2.718	NaN	1	1	Median	2.8369	3.0014	NaN	1	1	Median	317240000	102050000	215190000	51326000	20081000	31245000	74796000	38172000	36624000	86162000	22953000	63210000	104960000	20844000	84114000	17398	4922	16485	105906;105907;105908;105909	142790;142791;142792;142793	142790			4	
GADIMYTGTVDCWR	0	Unmodified	1643.7072	0.70721216	1014;1013	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	66.042	65.285	2	1.5987E-14	59462	160511_QHF_FH_JSI12i_1	155.97	146.96			1.2579	1.3811	54.808	6	5	Median	0.82907	0.69959	NaN	1	1	Median	1.4245	1.7162	7.2594	2	2	Median	0.96643	0.93519	NaN	1	1	Median	1.8489	1.9663	73.414	2	1	Median	728240000	287950000	440300000	30603000	15372000	15231000	277110000	89109000	188000000	160850000	84357000	76495000	259680000	99109000	160570000	17399	1014;1013	16486	105910;105911;105912;105913;105914;105915;105916	142794;142795;142796;142797;142798;142799;142800;142801	142797			8	
GADIMYTGTVDCWRK	1	Unmodified	1771.8022	0.80217518	1014;1013	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	3	4	56.526	55.793	2;3	2.098E-15	47861	160511_QHF_FH_JSI12i_3	162.37	138.08			1.0941	1.1764	33.954	11	2	Median	1.407	1.1764	NaN	1	0	Median	1.0533	1.3268	66.611	3	2	Median	1.0451	1.0088	9.527	3	0	Median	1.2483	1.2577	18.52	4	0	Median	2264500000	1081900000	1182600000	64187000	29202000	34986000	381200000	206330000	174860000	744790000	383950000	360840000	1074400000	462430000	611940000	17400	1014;1013	16487	105917;105918;105919;105920;105921;105922;105923;105924;105925;105926;105927;105928	142802;142803;142804;142805;142806;142807;142808;142809;142810;142811;142812;142813;142814;142815	142815			14	
GADINAPDK	1	Unmodified	899.43486	0.43486035	1900	P58546	MTPN	Myotrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				2	3	3	3	16.082	10.386	2	2.6129E-05	10120	160511_QHF_FH_JSI10i_1	104.2	65.176			0.95711	0.9727	13.021	11	0	Median	1.0532	0.8566	11.482	2	0	Median	0.90813	1.0893	16.105	3	0	Median	1.0042	0.9727	5.8604	3	0	Median	0.94269	0.98619	6.5657	3	0	Median	5142800000	2602200000	2540600000	1369000000	707240000	661750000	1228800000	653950000	574900000	1192700000	612650000	580070000	1352300000	628390000	723890000	17401	1900	16488	105929;105930;105931;105932;105933;105934;105935;105936;105937;105938;105939	142816;142817;142818;142819;142820;142821;142822;142823;142824;142825;142826;142827;142828;142829;142830;142831;142832;142833	142822			17	
GADNDGSGSESGYTTPK	1	Unmodified	1641.6754	0.67543756	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.731	13.293	2	1.3738E-80	10986	160511_QHF_FH_JSI12i_1	239.75	232.62			1.1116	1.1855	15.655	4	0	Linear	1.0976	0.89384	NaN	1	0	Median	0.80019	0.93258	NaN	1	0	Median	1.1258	1.0913	NaN	1	0	Median	1.1938	1.2589	NaN	1	0	Median	216040000	119030000	97012000	42948000	19880000	23068000	51243000	33124000	18119000	60039000	33938000	26101000	61810000	32086000	29724000	17402	3264	16489	105940;105941;105942;105943	142834;142835;142836;142837;142838;142839;142840;142841	142837			8	
GADNLVAINLIVQHIQDILNGGPSK	1	Unmodified	2598.4129	0.4129497	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	2	2	2	2	100.66	93.716	3;4	8.1793E-130	52535	160513_QHF_FH_JSI9Kac_6	254.48	222.09			0.98174	0.91959	26.702	7	1	Median	1.0164	0.87867	6.4371	2	0	Median	0.79287	0.94582	4.7217	2	0	Median	0.52557	0.49729	NaN	1	1	Median	1.0203	1.0817	1.1128	2	0	Median	1644700000	862090000	782570000	400110000	203970000	196140000	879790000	467360000	412430000	60636000	32137000	28498000	304130000	158620000	145510000	17403	4574	16490	105944;105945;105946;105947;105948;105949;105950;105951	142842;142843;142844;142845;142846;142847;142848;142849;142850;142851;142852;142853	142844			12	
GADSELSTVPSVTK	1	Unmodified	1389.6987	0.69873919	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	5.51	4				4	3				1	2	5	3	48.295	42.256	2	6.2941E-24	37153	160511_QHF_FH_JSI9i_1	156.01	133.99			0.76645	0.79856	42.545	8	4	Median	NaN	NaN	NaN	0	0	Median	0.63563	0.74166	9.8098	2	2	Median	0.81517	0.80221	58.336	3	1	Median	0.88719	0.92786	46.006	3	1	Median	694730000	395360000	299370000	0	0	0	212050000	135380000	76669000	241370000	131700000	109670000	241310000	128270000	113030000	17404	1580	16491	105952;105953;105954;105955;105956;105957;105958;105959;105960;105961;105962	142854;142855;142856;142857;142858;142859;142860;142861;142862;142863;142864	142860			11	
GADVFLEALAR	0	Unmodified	1160.619	0.61897272	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		81.385	80.738	2	0.003663	70977	160511_QHF_FH_JSI11i_2	67.704	53.497			0.89998	0.85158	22.25	2	2	Median	0.82398	0.72761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98298	0.99667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39107000	19941000	19166000	15539000	7589700	7949400	0	0	0	23567000	12351000	11216000	0	0	0	17405	1042	16492	105963;105964	142865;142866	142866			2	
GADVNAPPVPSSR	0	Unmodified	1265.6364	0.6364137	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.104	28.511	2	7.7891E-06	25548	160511_QHF_FH_JSI12i_1	125.23	118.92			0.97607	0.93999	10.931	4	0	Median	1.2239	0.99699	NaN	1	0	Median	0.75141	0.88624	NaN	1	0	Median	0.90403	0.87868	NaN	1	0	Median	1.0538	1.1067	NaN	1	0	Median	292210000	157630000	134580000	58774000	29032000	29742000	73344000	43608000	29737000	82396000	45298000	37098000	77697000	39691000	38006000	17406	3434;489	16493	105965;105966;105967;105968	142867;142868;142869;142870;142871	142868			4	
GAEAANVTGPDGVPVEGSR	0	Unmodified	1781.8544	0.85440498	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.65	8				2	3				2	4	3	4	43.259	39.103	2;3	2.668E-118	35529	160511_QHF_FH_JSI12i_1	344.38	304.75			1.0235	1.0525	16.188	12	1	Median	1.201	0.97702	NaN	1	0	Median	0.85086	1.0136	27.92	4	1	Median	1.0519	1.04	12.537	3	0	Median	1.003	1.0848	5.9819	4	0	Median	1856200000	948160000	908080000	289150000	150980000	138170000	511780000	275750000	236030000	547520000	264550000	282970000	507790000	256880000	250910000	17407	1106	16494	105969;105970;105971;105972;105973;105974;105975;105976;105977;105978;105979;105980;105981	142872;142873;142874;142875;142876;142877;142878;142879;142880;142881;142882;142883;142884;142885;142886;142887;142888;142889;142890;142891;142892;142893	142875			22	
GAEAANVTGPGGVPVQGSK	1	Unmodified	1694.8588	0.85876208	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	5.4	8	1	5		6	6				4	8	8	6	39.371	34.613	2;3	9.7603E-54	30990	160511_QHF_FH_JSI10i_1	278.93	265.73			0.92621	0.95447	20.483	24	2	Median	1.0547	0.85274	51.043	4	2	Median	0.71687	0.84475	8.0364	8	0	Median	0.98694	0.95791	8.6444	6	0	Median	0.9549	1.0133	5.954	6	0	Median	8565700000	4136500000	4429200000	1769100000	769390000	999720000	2440500000	1236300000	1204200000	2427500000	1194700000	1232800000	1928500000	936100000	992440000	17408	2066	16495	105982;105983;105984;105985;105986;105987;105988;105989;105990;105991;105992;105993;105994;105995;105996;105997;105998;105999;106000;106001;106002;106003;106004;106005;106006;106007	142894;142895;142896;142897;142898;142899;142900;142901;142902;142903;142904;142905;142906;142907;142908;142909;142910;142911;142912;142913;142914;142915;142916;142917;142918;142919;142920;142921;142922;142923;142924;142925;142926;142927;142928;142929;142930;142931;142932;142933;142934;142935;142936;142937;142938;142939;142940;142941;142942;142943	142921			50	
GAEAANVTGPGGVPVQGSKYAADR	1	Acetyl (K)	2313.1349	0.13493694	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		60.629	51.101	3	1.1067E-05	26933	160513_QHF_FH_JSI11Kac_3	73.574	64.755			0.57318	0.61374	87.665	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95679	1.1408	NaN	1	0	Median	0.34338	0.3302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6765800	4029200	2736700	0	0	0	1940000	960420	979530	4825900	3068800	1757100	0	0	0	17409	2066	16496	106008;106009	142944;142945;142946;142947	142945	2139		4	
GAEAANVTGPGGVPVQGSKYAADRNHYR	1	Acetyl (K)	2883.4012	0.40121581	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		52.79	43.065	4	4.3535E-05	23295	160513_QHF_FH_JSI11Kac_6	68.657	62.224			0.33835	0.32261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33835	0.32261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17255000	9366300	7889100	0	0	0	0	0	0	17255000	9366300	7889100	0	0	0	17410	2066	16497	106010	142948;142949	142948	2139		2	
GAEADQIIEYLK	1	Unmodified	1348.6874	0.68744622	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.64	4	6					2			3	4	2	3	77.441	75.121	2	4.7239E-53	69264	160511_QHF_FH_JSI12i_1	214.82	171.02			0.89588	0.91524	11.709	12	7	Median	1.0095	0.82808	14.297	3	2	Plateau	0.81396	0.97851	14.225	4	3	Median	0.91525	0.91524	1.4721	2	1	Median	0.78508	0.81468	9.0348	3	1	Plateau	2162900000	1126600000	1036200000	456500000	229210000	227290000	619490000	329220000	290260000	514750000	250410000	264340000	572130000	317780000	254350000	17411	2323	16498	106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022	142950;142951;142952;142953;142954;142955;142956;142957;142958;142959;142960;142961;142962;142963;142964;142965;142966;142967;142968	142954			19	
GAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE	0	Unmodified	3624.5459	0.54594612	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	48.458	47.961	3;4	4.5855E-32	43520	160511_QHF_FH_JSI11i_1	105.66	104.28			1.3829	1.3653	21.075	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4472	1.4202	5.576	2	0	Median	0.97067	0.99226	NaN	1	0	Median	246360000	115800000	130550000	0	0	0	0	0	0	179760000	76256000	103500000	66598000	39546000	27052000	17412	1639	16499	106023;106024;106025;106026	142969;142970;142971;142972;142973;142974;142975	142970			7	
GAEDDLNTVAAGTMTGMLYK	1	Unmodified	2056.9445	0.9445419	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	86.247	85.799	2;3	1.5619E-42	78162	160511_QHF_FH_JSI11i_1	200.16	177.27			1.0193	1.0938	14.343	7	0	Median	1.1905	0.9836	16.669	2	0	Median	0.96059	1.135	2.455	2	0	Median	0.91301	0.87494	13.769	2	0	Median	1.0631	1.0938	NaN	1	0	Median	310630000	144150000	166480000	56295000	24000000	32295000	81705000	40878000	40827000	100940000	48099000	52843000	71684000	31169000	40516000	17413	219	16500	106027;106028;106029;106030;106031;106032;106033	142976;142977;142978;142979;142980;142981;142982	142976			7	
GAEEEKPK	2	Acetyl (K)	928.45018	0.45017606	4070;36	A8MPP1;Q96FC9	DDX11L8;DDX11	Putative ATP-dependent RNA helicase DDX11-like protein 8;Probable ATP-dependent RNA helicase DDX11	no	no	1	0	0	1		By MS/MS	By matching	By MS/MS	12.2	0.433					3	1					2	1	1	10.942	3.6453	2	0.0067688	3706	160513_QHF_FH_JSI12Kac_2	81.548	46.74			0.83556	0.92624	27.811	4	0	Median	NaN	NaN	NaN	0	0	Median	0.73312	0.86707	13.748	2	0	Median	1.5127	1.4934	NaN	1	0	Median	0.85692	0.8978	NaN	1	0	Median	13480000	7654200	5825400	0	0	0	6460200	3738200	2722000	989920	411120	578800	6029500	3504900	2524600	17414	36;4070	16501	106034;106035;106036;106037	142983;142984;142985	142985	7		3	
GAEEMETVIPVDVMR	0	Unmodified	1674.7957	0.79569281	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.958	9		5							4	4	3	3	81.775	81.094	2;3	3.6041E-98	73910	160511_QHF_FH_JSI12i_1	314.79	283.9			0.98056	0.97026	8.0152	12	4	Median	1.1763	0.96698	11.581	4	2	Median	0.7818	0.9035	2.6448	3	1	Median	1.0135	0.97984	1.0073	2	0	Median	0.97865	1.0427	2.9887	3	1	Plateau	6220700000	3229200000	2991600000	1295600000	614320000	681330000	1617500000	897090000	720400000	1705000000	873070000	831920000	1602600000	844670000	757940000	17415	4276	16502	106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051	142986;142987;142988;142989;142990;142991;142992;142993;142994;142995;142996;142997;142998;142999;143000;143001;143002;143003;143004;143005;143006;143007;143008;143009;143010;143011;143012;143013;143014;143015	142995			30	
GAEEMETVIPVDVMR	0	Oxidation (M)	1690.7906	0.79060744	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	1	3	4	68.209	67.616	2;3	5.96E-30	61893	160511_QHF_FH_JSI12i_1	193.73	167.06			0.94996	0.99131	5.827	10	4	Median	1.2726	1.0454	7.5326	2	0	Median	0.86145	1.0062	NaN	1	0	Median	0.94844	0.92412	0.92619	3	2	Median	0.94844	0.99413	4.4645	4	2	Median	1003600000	513820000	489740000	160260000	73095000	87166000	161160000	89981000	71179000	336500000	166530000	169970000	345640000	184210000	161430000	17416	4276	16502	106052;106053;106054;106055;106056;106057;106058;106059;106060;106061	143016;143017;143018;143019;143020;143021;143022;143023;143024;143025;143026;143027;143028;143029;143030	143023		2426;2427	15	
GAEEMETVIPVDVMR	0	2 Oxidation (M)	1706.7855	0.78552206	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	2	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	64.261	54.828	2	6.179E-11	28516	160513_QHF_FH_JSI12Kac_3	120.06	114.22			1.0434	1.1178	15.209	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73081	0.85564	NaN	1	0	Median	1.1366	1.1053	NaN	1	0	Median	1.0434	1.1211	NaN	1	0	Median	10328000	4661000	5667200	0	0	0	1843700	1053600	790090	4187600	1634200	2553300	4296900	1973100	2323800	17417	4276	16502	106062;106063;106064	143031;143032;143033;143034;143035	143034		2426;2427	5	
GAEEMETVIPVDVMRR	0	Unmodified	1830.8968	0.89680384	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	3	2	3	71.617	70.975	2;3	1.07E-07	61546	160511_QHF_FH_JSI12i_3	132.84	122.5			1.2104	1.2955	11.194	9	2	Median	1.4315	1.231	13.218	2	1	Median	1.1792	1.4572	4.0626	2	1	Median	1.3518	1.311	1.6791	2	0	Median	1.1153	1.1302	3.1436	3	0	Median	910930000	418770000	492160000	172080000	78261000	93814000	192340000	84592000	107750000	240580000	95271000	145300000	305930000	160640000	145290000	17418	4276	16503	106065;106066;106067;106068;106069;106070;106071;106072;106073;106074	143036;143037;143038;143039;143040;143041;143042;143043;143044;143045;143046;143047;143048;143049;143050;143051	143050			16	
GAEEWILTGSYDK	1	Unmodified	1467.6882	0.6881745	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	67.901	67.262	2	3.6433E-07	58684	160511_QHF_FH_JSI11i_2	96.604	61.85			0.89902	1.0527	14.384	3	3	Median	1.2592	1.0666	NaN	1	1	Median	0.89902	1.0527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76734	0.82614	NaN	1	1	Median	109850000	52163000	57686000	31077000	13638000	17439000	42174000	19549000	22624000	0	0	0	36599000	18976000	17623000	17419	4592	16504	106075;106076;106077;106078	143052;143053;143054;143055	143055			4	
GAEGILAPQPPPPQQHQERPGAAAIGSAR	0	Unmodified	2900.5005	0.50053593	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				46.112	44.502	4	4.8295E-06	36282	160511_QHF_FH_JSI9i_3	46.695	40.4			1.1339	0.94465	NaN	1	0	Median	1.1339	0.94465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104080000	53374000	50705000	104080000	53374000	50705000	0	0	0	0	0	0	0	0	0	17420	3801	16505	106079	143056;143057;143058	143056			3	
GAEHITTYTFNTHK	1	Unmodified	1618.774	0.77396981	3299	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	27.546	27.523	3	4.9288E-07	23068	160511_QHF_FH_JSI12i_3	105.03	100.71			1.1018	1.0609	11.83	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2428	1.1535	NaN	1	0	Median	0.97677	0.97577	NaN	1	0	Median	136940000	63318000	73625000	0	0	0	0	0	0	44714000	20495000	24219000	92229000	42823000	49405000	17421	3299	16506	106080;106081	143059	143059			1	
GAEIEYAMAYSK	1	Unmodified	1331.6068	0.60675306	3940	Q969H8	MYDGF	Myeloid-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	4	2	2	52.343	51.436	2	8.6977E-11	46440	160511_QHF_FH_JSI11i_1	165.11	138			1.2011	1.188	18.842	8	0	Median	1.2349	1.0252	16.718	2	0	Median	0.97258	1.188	1.1585	2	0	Median	1.1972	1.182	6.4145	2	0	Median	1.4318	1.5637	17.123	2	0	Median	2306900000	1131100000	1175800000	499800000	216680000	283120000	685960000	366710000	319250000	623580000	313300000	310280000	497600000	234420000	263180000	17422	3940	16507	106082;106083;106084;106085;106086;106087;106088;106089;106090;106091;106092	143060;143061;143062;143063;143064;143065;143066;143067;143068;143069;143070;143071;143072;143073;143074;143075;143076;143077	143060			18	
GAEIEYAMAYSK	1	Oxidation (M)	1347.6017	0.60166768	3940	Q969H8	MYDGF	Myeloid-derived growth factor	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	47.692	38.495	2	0.0078686	21450	160513_QHF_FH_JSI11Kac_3	64.297	45.054			1.2727	1.3834	35.091	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0206	1.2071	NaN	1	0	Median	2.3888	2.3457	NaN	1	1	Median	1.2727	1.3834	NaN	1	0	Median	7705400	3340300	4365100	0	0	0	3196700	1448600	1748100	1263200	602110	661050	3245500	1289500	1956000	17423	3940	16507	106093;106094;106095	143078;143079;143080	143078		2362	3	
GAEILADTFK	1	Unmodified	1063.555	0.55497548	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3.5	4.72	3	2					1			3	3			59.393	56.853	2	0.00023605	51332	160511_QHF_FH_JSI10i_1	91.265	49.836			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17424	603	16508	106096;106097;106098;106099;106100;106101	143081;143082;143083;143084;143085;143086	143082			6	
GAEILEVLHSLPAVR	0	Unmodified	1602.9093	0.90934108	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.75		13	10						1	6	5	8	5	96.329	95.681	2;3	1.4082E-22	85648	160511_QHF_FH_JSI11i_3	181.26	166.83			0.73553	0.76299	22.524	23	16	Median	0.95772	0.83248	21.575	6	6	Median	0.68974	0.81276	14.153	5	3	Median	0.94094	0.92654	32.441	7	4	Median	0.61642	0.70093	8.0793	5	3	Median	1503000000	803090000	699900000	150900000	76926000	73973000	215520000	126570000	88952000	599970000	296780000	303200000	536600000	302820000	233780000	17425	2598	16509	106102;106103;106104;106105;106106;106107;106108;106109;106110;106111;106112;106113;106114;106115;106116;106117;106118;106119;106120;106121;106122;106123;106124;106125	143087;143088;143089;143090;143091;143092;143093;143094;143095;143096;143097;143098;143099;143100;143101;143102;143103;143104;143105;143106;143107;143108;143109;143110;143111;143112;143113;143114;143115;143116;143117;143118;143119;143120	143088			34	
GAENFDKFFTR	1	Acetyl (K)	1372.6412	0.64116473	1112	P17252	PRKCA	Protein kinase C alpha type	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.387	67.778	2	1.5269E-05	36013	160513_QHF_FH_JSI11Kac_5	105.86	87.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1512500	1512500	0	0	0	0	0	0	0	1512500	1512500	0	0	0	0	17426	1112	16510	106126	143121	143121	967		1	
GAEPSGGAAR	0	Unmodified	871.41479	0.41479361	164	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	1	3	4.9103	1.1414	2	0.0012858	2441	160511_QHF_FH_JSI12i_1	77.732	33.121			0.85372	1.0341	8.1276	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.90098	1.0505	NaN	1	1	Median	1.137	1.1019	NaN	1	0	Median	0.90039	0.9625	7.9208	2	1	Median	297550000	151950000	145590000	0	0	0	136640000	71438000	65204000	3059800	1485200	1574500	157840000	79030000	78815000	17427	164	16511	106127;106128;106129;106130;106131	143122;143123;143124;143125	143122			4	
GAEQLAEGGR	0	Unmodified	986.47812	0.47812215	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.79	4	2	1			2				2	4	1	2	13.071	9.5531	2	1.6385E-14	9278	160511_QHF_FH_JSI12i_1	166.07	137.54			1.0914	1.0802	16.424	8	2	Median	1.3236	1.0575	5.3769	2	0	Median	0.89705	1.0622	9.3664	3	1	Median	1.1961	1.1458	NaN	1	0	Median	0.87043	0.95129	37.444	2	1	Median	4589600000	2204500000	2385100000	1226100000	527160000	698950000	1277700000	639280000	638460000	989420000	475050000	514370000	1096300000	562960000	533360000	17428	2282	16512	106132;106133;106134;106135;106136;106137;106138;106139;106140	143126;143127;143128;143129;143130;143131;143132;143133	143129			7	
GAESVTEEK	1	Unmodified	948.44001	0.4400053	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		7.7886	7.6121	2	5.797E-05	5422	160511_QHF_FH_JSI10i_1	97.431	48.013			1.7258	1.8207	9.6264	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4222	1.7009	NaN	1	0	Median	2.0942	1.949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133610000	49019000	84588000	0	0	0	64200000	26573000	37627000	69407000	22446000	46961000	0	0	0	17429	1530;1750	16513	106141;106142	143134;143135	143135			2	
GAETELVR	0	Unmodified	873.4556	0.45559579	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	16.706	16.417	2	0.0045598	14081	160511_QHF_FH_JSI12i_1	75.692	45.272			0.3179	0.32204	71.286	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19995	0.19454	NaN	1	1	Median	0.50544	0.53312	NaN	1	1	Median	601780000	476930000	124850000	0	0	0	0	0	0	382670000	327240000	55435000	219110000	149690000	69418000	17430	1580	16514	106143;106144	143136;143137	143137			2	
GAEVNAVTSNR	0	Unmodified	1116.5523	0.55234972	2210	Q03468	ERCC6	DNA excision repair protein ERCC-6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.494	13.081	2	0.0013912	10844	160511_QHF_FH_JSI12i_1	68.626	46.389			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17431	2210	16515	106145	143138	143138			1	
GAEYVSAR	0	Unmodified	851.41373	0.41373097	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			2	1	3	2	11.946	9.0906	2	0.005635	7786	160511_QHF_FH_JSI9i_1	62.107	32.731			0.86441	0.85534	20.949	3	1	Median	1.4256	1.2238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86441	0.8476	NaN	1	0	Median	0.82062	0.85534	NaN	1	0	Median	257080000	139750000	117330000	49176000	20851000	28325000	0	0	0	12587000	6784100	5803000	195320000	112120000	83204000	17432	542	16516	106146;106147;106148;106149;106150;106151;106152;106153	143139;143140;143141;143142;143143;143144;143145;143146;143147	143146			9	
GAFASLSELHCDK	1	Unmodified	1433.6609	0.66091389	72	CON__Q3SX09			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							2	3	4	3	45.899	45.125	2;3	1.6366E-10	39548	160511_QHF_FH_JSI11i_3	150.46	127.31		+	1.1626	1.0817	33.582	10	2	Median	1.0881	0.92369	23.914	2	0	Median	0.76924	0.91942	3.9981	3	0	Plateau	1.1876	1.1699	26.874	3	1	Median	1.8055	1.8283	20.588	2	1	Median	1261800000	550470000	711370000	70937000	31858000	39079000	249100000	136750000	112350000	453360000	210070000	243290000	488440000	171800000	316650000	17433	72	16517	106154;106155;106156;106157;106158;106159;106160;106161;106162;106163;106164;106165	143148;143149;143150;143151;143152;143153;143154;143155;143156;143157;143158;143159;143160;143161;143162;143163;143164;143165	143148			18	
GAFFMDEDEEVYKR	1	Unmodified	1734.7559	0.75593649	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	58.023	57.896	3	0.0025106	51250	160511_QHF_FH_JSI11i_3	48.351	38.012			0.93431	0.90274	1.1773	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97978	0.91028	NaN	1	0	Median	0.89094	0.89525	NaN	1	0	Median	124810000	64798000	60012000	0	0	0	0	0	0	68234000	35215000	33018000	56575000	29582000	26993000	17434	1847	16518	106166;106167	143166	143166			1	
GAFGEATLYR	0	Unmodified	1083.5349	0.53490874	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.673	42.199	2	0.0022354	36285	160511_QHF_FH_JSI11i_2	64.485	44.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17435	3716	16519	106168	143167	143167			1	
GAFGEVAVVK	1	Unmodified	975.53893	0.53893149	5677;2983	Q9Y5S2;Q5VT25	CDC42BPB;CDC42BPA	Serine/threonine-protein kinase MRCK beta;Serine/threonine-protein kinase MRCK alpha	no	no	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	45.548	44.326	2	0.0007075	38798	160511_QHF_FH_JSI9i_2	70.256	36.459			0.88631	0.86278	24.129	2	0	Median	0.83602	0.72745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93963	1.0233	NaN	1	0	Median	87720000	54073000	33647000	42365000	29421000	12944000	0	0	0	0	0	0	45355000	24652000	20703000	17436	5677;2983	16520	106169;106170	143168	143168			1	
GAFGEVQLVR	0	Unmodified	1074.5822	0.58219329	475;2421	Q13464;O75116	ROCK1;ROCK2	Rho-associated protein kinase 1;Rho-associated protein kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.828	52.861	2	5.2838E-06	45641	160511_QHF_FH_JSI11i_2	108.98	93.827			2.5441	3.2951	21.147	4	1	Linear	2.7805	2.3595	NaN	1	0	Median	2.3279	2.8745	NaN	1	0	Median	3.417	3.4373	NaN	1	0	Median	1.9156	2.1364	NaN	1	1	Median	417500000	122830000	294670000	91461000	23419000	68042000	100800000	34968000	65828000	117950000	23501000	94453000	107280000	40942000	66343000	17437	2421;475	16521	106171;106172;106173;106174	143169;143170;143171;143172;143173;143174	143173			6	
GAFGKPQGTVAR	1	Unmodified	1187.6411	0.64110515	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.3		1	7					1	4	5	3	3	2	18.05	14.6	2;3	4.6682E-05	11931	160511_QHF_FH_JSI10i_3	121.5	92.341			0.92709	0.91084	11.389	13	0	Median	1.1502	0.91534	12.977	5	0	Median	0.89298	1.0184	10.704	3	0	Median	0.93712	0.89519	7.4255	3	0	Plateau	0.90083	0.95786	9.3701	2	0	Median	2012900000	1071300000	941640000	694950000	346460000	348480000	1012100000	558920000	453190000	222950000	113770000	109180000	82891000	52103000	30788000	17438	1292	16522	106175;106176;106177;106178;106179;106180;106181;106182;106183;106184;106185;106186;106187	143175;143176;143177;143178;143179;143180;143181;143182;143183;143184;143185;143186;143187;143188	143180			14	
GAFGKPQGTVAR	1	Acetyl (K)	1229.6517	0.65166983	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.831						3	3	4		1	3	3	3	41.71	32.047	2	2.9825E-15	18293	160513_QHF_FH_JSI10Kac_4	134.68	105.59			0.70975	0.78099	41.05	9	0	Median	1.1557	0.97793	NaN	1	0	Median	1.0089	1.2039	2.7379	3	0	Median	0.43732	0.43477	1.367	2	0	Median	0.70975	0.78099	8.7	3	0	Plateau	206660000	129610000	77045000	7363900	3590700	3773300	48796000	23535000	25261000	99213000	71755000	27458000	51284000	30731000	20553000	17439	1292	16522	106188;106189;106190;106191;106192;106193;106194;106195;106196;106197	143189;143190;143191;143192;143193;143194;143195;143196;143197;143198;143199;143200;143201;143202;143203;143204;143205;143206;143207	143192	1218		19	
GAFGVGQEQIDAFLK	1	Unmodified	1578.8042	0.80420731	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	89.302	88.388	2	0.00040214	76314	160511_QHF_FH_JSI12i_2	93.345	78.373			0.31579	0.35129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31579	0.35129	NaN	1	1	Median	34095000	24416000	9678900	0	0	0	0	0	0	0	0	0	34095000	24416000	9678900	17440	21	16523	106198;106199	143208;143209	143208			2	
GAFHTKGYYAAVEAK	2	Acetyl (K)	1653.8151	0.81510635	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.732	43.007	3	0.0076663	23317	160513_QHF_FH_JSI11Kac_6	53.169	42.82			0.34291	0.34048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34291	0.34048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3502200	3047400	454810	0	0	0	0	0	0	3502200	3047400	454810	0	0	0	17441	2677	16524	106200	143210;143211	143211	2625		2	
GAFIDQSQSLNIHIAEPNYGK	1	Unmodified	2301.139	0.13895968	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	3.73	2	5	5						1	3	3	3	4	73.354	72.013	2;3	2.5447E-47	62403	160511_QHF_FH_JSI12i_2	210.61	189.25			1.1565	1.0151	20.994	13	4	Median	1.1795	0.9854	21.903	3	2	Median	0.81456	1.0151	20.719	3	1	Plateau	1.079	1.0639	32.603	3	0	Plateau	1.0363	1.0883	15.175	4	1	Median	2281700000	1056100000	1225600000	282000000	125760000	156240000	394320000	213150000	181170000	652490000	289810000	362670000	952940000	427380000	525560000	17442	1242	16525	106201;106202;106203;106204;106205;106206;106207;106208;106209;106210;106211;106212;106213	143212;143213;143214;143215;143216;143217;143218;143219;143220;143221;143222;143223;143224;143225;143226;143227;143228;143229;143230;143231;143232;143233;143234;143235;143236;143237	143215			26	
GAFLSNDAAYTYFYK	1	Unmodified	1729.7988	0.79878758	1735	P51511	MMP15	Matrix metalloproteinase-15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	82.281	81.513	2	9.1197E-15	71900	160511_QHF_FH_JSI9i_2	110.66	96.504			1.1856	1.2304	14.194	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1072	1.354	21.921	2	2	Median	1.1951	1.1821	NaN	1	0	Median	1.1762	1.2807	NaN	1	1	Median	122780000	60279000	62504000	0	0	0	64252000	35802000	28450000	33231000	14754000	18478000	25301000	9723900	15577000	17443	1735	16526	106214;106215;106216;106217;106218	143238;143239;143240;143241;143242;143243;143244;143245	143240			8	
GAFMLEPEGMSPMEPAGVSPMPGTQK	1	Unmodified	2675.2104	0.21035177	3054	Q6IBW4	NCAPH2	Condensin-2 complex subunit H2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				94.15	93.448	3	0.0086516	82933	160511_QHF_FH_JSI9i_1	36.576	29.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4036000	1644100	2391900	4036000	1644100	2391900	0	0	0	0	0	0	0	0	0	17444	3054	16527	106219	143246	143246			0	
GAFSEEYK	1	Unmodified	929.41306	0.41306227	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	20.489	19.907	2	0.00041541	16283	160511_QHF_FH_JSI11i_2	109.01	67.36			0.87083	1.0451	16.675	7	2	Median	1.2523	1.0614	NaN	1	0	Median	0.70961	0.8509	29.489	2	0	Median	0.9769	0.96213	11.703	2	1	Median	0.93645	1.008	14.975	2	1	Median	437920000	214670000	223250000	52340000	21648000	30692000	112300000	63777000	48522000	147030000	63325000	83702000	126250000	65920000	60333000	17445	933	16528	106220;106221;106222;106223;106224;106225;106226;106227	143247;143248;143249;143250;143251;143252;143253;143254;143255;143256;143257;143258;143259	143257			13	
GAFTFWSYAIGLPLPSSSILSWK	1	Unmodified	2527.3151	0.31513313	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.859	94.138	3	5.4652E-06	55359	160513_QHF_FH_JSI10Kac_6	115.39	104.85			0.74296	0.88864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74296	0.88864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155210000	97850000	57363000	0	0	0	155210000	97850000	57363000	0	0	0	0	0	0	17446	481	16529	106228	143260	143260			1	
GAGAESSHPVR	0	Unmodified	1066.5156	0.51557028	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	10.7	6.13		1						2				1	2	5.0966	0.044891	2;3	8.1809E-06	2289	160511_QHF_FH_JSI12i_2	81.625	61.321			1.2589	1.3015	48.307	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9298	1.8314	NaN	1	1	Median	0.82126	0.92488	NaN	1	0	Median	95432000	56219000	39213000	0	0	0	0	0	0	2264300	913550	1350800	93168000	55305000	37863000	17447	1005	16530	106229;106230;106231	143261;143262;143263	143261			3	
GAGAFGYFEVTHDITK	1	Unmodified	1711.8206	0.82058566	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	3	3	2	74.289	67.778	2;3	4.0422E-55	37283	160513_QHF_FH_JSI10Kac_6	196.57	168.89			1.1954	1.0882	24.474	9	4	Median	1.2719	1.0932	7.2658	2	0	Median	0.5762	0.68833	22.1	2	1	Median	1.1547	1.0882	4.6887	3	2	Median	1.2076	1.2667	4.4489	2	1	Median	858820000	453700000	405120000	166360000	77291000	89065000	293920000	176660000	117260000	273610000	146790000	126820000	124930000	52953000	71975000	17448	800	16531	106232;106233;106234;106235;106236;106237;106238;106239;106240;106241	143264;143265;143266;143267;143268;143269;143270;143271;143272	143272			9	
GAGAFGYFEVTHDITKYSK	2	Acetyl (K)	2132.0215	0.021470309	800	P04040	CAT	Catalase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	81.214	73.097	3	0.00023425	39766	160513_QHF_FH_JSI11Kac_6	102.39	89.598			0.87414	0.95914	32.936	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.87469	1.0417	NaN	1	0	Median	0.77711	0.76488	NaN	1	1	Median	0.49456	0.53933	NaN	1	1	Median	88598000	61656000	26942000	0	0	0	33251000	18498000	14753000	38824000	28220000	10604000	16522000	14937000	1585500	17449	800	16532	106242;106243;106244	143273;143274;143275	143273	423		3	
GAGALLQHGLVNFTFNK	1	Unmodified	1785.9526	0.95260288	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		81.223	80.564	3	1.5716E-07	71875	160511_QHF_FH_JSI11i_3	125.52	116.49			0.7692	0.80134	8.7693	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73495	0.85261	NaN	1	0	Median	0.80504	0.75316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105430000	60160000	45269000	0	0	0	28301000	15669000	12632000	77129000	44491000	32637000	0	0	0	17450	4889	16533	106245;106246	143276;143277	143276			2	
GAGATLEHQQEISK	1	Unmodified	1467.7318	0.73177065	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	16.895	16.248	3	0.00094993	13660	160511_QHF_FH_JSI10i_2	55.176	49.094			1.0838	1.0834	26.753	3	0	Median	NaN	NaN	NaN	0	0	Median	0.60967	0.75499	NaN	1	0	Median	1.0838	1.0834	NaN	1	0	Median	1.1776	1.2731	NaN	1	0	Median	119570000	69590000	49977000	0	0	0	41617000	27403000	14214000	45460000	23464000	21996000	32490000	18722000	13768000	17451	5677	16534	106247;106248;106249	143278	143278			1	
GAGAVIHTHSK	1	Unmodified	1076.5727	0.57269123	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	5.6792	5.4739	2;3	1.5373E-59	3083	160511_QHF_FH_JSI12i_3	233.46	182.11			0.86664	0.87597	14.231	9	3	Median	1.174	0.95535	8.6173	2	0	Median	0.6716	0.77878	11.247	2	1	Median	0.78649	0.74979	18.06	3	2	Median	0.88389	0.89665	3.2997	2	0	Median	2106900000	1075800000	1031200000	484040000	192110000	291930000	278790000	166230000	112560000	443860000	246550000	197300000	900250000	470870000	429390000	17452	4101	16535	106250;106251;106252;106253;106254;106255;106256;106257;106258	143279;143280;143281;143282;143283;143284;143285;143286;143287;143288;143289;143290	143288			11	
GAGDGSDEEVDGKADGAEAKPAE	2	Unmodified	2173.9247	0.92472897	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2				By MS/MS	1	0	1												1	20.051	19.56	3	0.011166	17036	160511_QHF_FH_JSI12i_1	39.935	30.889			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17453	1436	16536	106259	143291	143291			1	
GAGEMLEDGSER	0	Unmodified	1249.5245	0.52447999	4025	Q96DE5	ANAPC16	Anaphase-promoting complex subunit 16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	21.634	21.248	2	0.00018022	18334	160511_QHF_FH_JSI11i_1	80.763	68.479			0.70019	0.74655	0.94085	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66358	0.75153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73881	0.7416	NaN	1	1	Median	58571000	33492000	25079000	0	0	0	30976000	18973000	12004000	0	0	0	27595000	14519000	13076000	17454	4025	16537	106260;106261;106262;106263;106264	143292;143293;143294;143295;143296	143292			5	
GAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEK	1	Unmodified	3650.7965	0.79650276	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	89.829	89.63	3;4	5.9394E-18	80079	160511_QHF_FH_JSI11i_3	72.878	71.088			0.86997	0.89295	5.8144	5	0	Median	1.0428	0.91482	NaN	1	0	Median	0.78741	0.95558	NaN	1	0	Median	0.90645	0.85324	6.4324	2	0	Median	0.85978	0.88504	NaN	1	0	Median	168690000	90490000	78202000	18088000	9862200	8226000	20941000	13407000	7534300	105900000	56713000	49184000	23766000	10508000	13258000	17455	3291	16538	106265;106266;106267;106268;106269	143297;143298;143299;143300;143301;143302;143303;143304;143305;143306;143307;143308;143309;143310;143311;143312	143299			16	
GAGGALLTPK	1	Unmodified	883.51272	0.51271674	3504	Q8N1G0	ZNF687	Zinc finger protein 687	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		17.844	17.658	2	0.046306	14908	160511_QHF_FH_JSI11i_1	36.395	18.41			0.79211	0.85845	5.4873	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69324	0.82578	NaN	1	0	Median	0.90507	0.89242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	408370000	231430000	176940000	0	0	0	182460000	99124000	83335000	225910000	132310000	93607000	0	0	0	17456	3504	16539	106270;106271	143313	143313			1	
GAGGFGGGGGTR	0	Unmodified	949.43659	0.43659168	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.67	5.91		1	1					1		1	1	1		8.4679	7.9545	2	0.015565	5873	160511_QHF_FH_JSI9i_2	51.436	41.022			1.1495	1.1428	18.547	2	1	Median	1.1359	1.0023	NaN	1	1	Median	1.1633	1.3029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49411000	21616000	27795000	27759000	12394000	15365000	21652000	9221700	12430000	0	0	0	0	0	0	17457	3337	16540	106272;106273;106274	143314;143315;143316	143315			3	
GAGGKAFCAGGDIR	1	Acetyl (K)	1377.6459	0.64593253	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			45.613	35.462	2	0.00082059	20121	160513_QHF_FH_JSI10Kac_4	97.911	71.397			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1422700	1422700	0	0	0	0	1422700	1422700	0	0	0	0	0	0	0	17458	3075	16541	106275	143317	143317	2763		1	
GAGHMVPTDK	1	Unmodified	1011.4808	0.48076468	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	4	2	9.5903	9.4447	2;3	0.00013329	6787	160511_QHF_FH_JSI12i_3	83.948	65.508			1.1829	1.0409	16.855	7	0	Median	1.1829	1.0409	NaN	1	0	Median	0.78933	0.95329	NaN	1	0	Median	1.2674	1.1978	8.1083	3	0	Median	0.85756	0.86809	5.9317	2	0	Median	1311400000	595280000	716110000	128810000	66776000	62033000	157520000	80162000	77359000	495120000	183480000	311630000	529950000	264860000	265090000	17459	975	16542	106276;106277;106278;106279;106280;106281;106282;106283;106284	143318;143319;143320;143321;143322;143323;143324;143325;143326;143327	143326			10	
GAGIGGLGITVEGPSESK	1	Unmodified	1627.8417	0.84171503	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							2	2	1	3	65.516	64.791	2	4.5573E-12	57555	160511_QHF_FH_JSI9i_1	175.48	160.28			0.084539	0.089397	96	8	8	Median	0.038312	0.031867	95.429	2	2	Median	0.045929	0.055367	94.66	2	2	Median	0.078165	0.076239	NaN	1	1	Median	0.11794	0.13061	67.947	3	3	Median	4255700000	3874100000	381570000	1101300000	1028600000	72742000	1404200000	1290400000	113750000	774340000	699370000	74971000	975840000	855740000	120100000	17460	512	16543	106285;106286;106287;106288;106289;106290;106291;106292	143328;143329;143330;143331;143332;143333;143334;143335	143332			8	
GAGLGAK	1	Unmodified	572.32821	0.32821043	1782	P52756	RBM5	RNA-binding protein 5	yes	no	0	0	0	0				By MS/MS	1	0	1												1	4.682	4.3403	2	0.043641	2226	160511_QHF_FH_JSI12i_1	48.848	48.848			1.5566	1.6558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5566	1.6558	NaN	1	1	Median	925810000	444400000	481400000	0	0	0	0	0	0	0	0	0	925810000	444400000	481400000	17461	1782	16544	106293	143336	143336			1	
GAGLGFSTAPNK	1	Unmodified	1118.572	0.57202253	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	33.905	33.795	2	0.011508	28613	160511_QHF_FH_JSI12i_3	81.338	57.909			0.84632	0.87479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84632	0.87479	NaN	1	0	Median	25269000	16398000	8871400	0	0	0	0	0	0	0	0	0	25269000	16398000	8871400	17462	2784	16545	106294	143337	143337			0	
GAGLSGR	0	Unmodified	616.32927	0.32927306	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	3.5345	3.2258	2	0.009769	1656	160511_QHF_FH_JSI12i_2	77.72	0			0.90458	0.89942	7.6888	6	0	Median	1.0482	0.89246	NaN	1	0	Median	0.71798	0.87021	5.767	2	0	Median	0.9506	0.95331	10.052	2	0	Median	0.89208	0.99725	NaN	1	0	Median	3241000000	1714600000	1526400000	326800000	156230000	170570000	1260600000	721660000	538920000	1226100000	621040000	605010000	427550000	215700000	211850000	17463	3647	16546	106295;106296;106297;106298;106299;106300	143338;143339;143340;143341;143342;143343;143344;143345;143346	143338			9	
GAGLSKAFVGQK	2	Acetyl (K)	1203.6612	0.66117189	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.5	0.5							1	1				1	1	56.379	45.594	2	0.023651	26344	160513_QHF_FH_JSI11Kac_4	70.1	34.589			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17464	512	16547	106301;106302	143347;143348	143347	260		2	
GAGMPGQHGQITQQELDTVVK	1	Oxidation (M)	2209.0797	0.079730244	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	2	4	49.585	48.79	3	1.1653E-09	41578	160511_QHF_FH_JSI12i_3	107.45	94.026			0.89472	0.95782	60.795	7	4	Median	2.0451	1.7656	NaN	1	1	Median	0.29188	0.36245	NaN	1	0	Median	0.73594	0.70426	6.8769	2	1	Median	1.3799	1.5165	35.864	3	2	Median	259820000	130410000	129420000	43129000	12425000	30704000	48270000	38899000	9371400	70059000	42148000	27911000	98366000	36934000	61433000	17465	1648	16548	106303;106304;106305;106306;106307;106308;106309;106310	143349;143350;143351;143352;143353;143354;143355;143356;143357	143356		1308	9	
GAGNQYNYIGYLDYKK	2	Unmodified	1865.8948	0.89481323	3023	Q68CQ7	GLT8D1	Glycosyltransferase 8 domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	60.406	60.138	3	0.0010161	51780	160511_QHF_FH_JSI12i_3	56.339	50.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17466	3023	16549	106311	143358	143358			1	
GAGPAPAWGPEAFTPDWESR	0	Unmodified	2097.9545	0.95445338	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.434	86.443	2	0.0017667	74738	160511_QHF_FH_JSI12i_2	53.252	46.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1891100	0	1891100	0	0	0	0	0	0	0	0	0	1891100	0	1891100	17467	1302	16550	106312	143359	143359			1	
GAGPGCYLAGSLTLSK	1	Unmodified	1550.7763	0.776278	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.59	67.294	2	0.00026441	58212	160511_QHF_FH_JSI12i_3	71.888	47.545			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17468	1316	16551	106313	143360	143360			1	
GAGPVPPGK	1	Unmodified	778.43374	0.43373813	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.092	10.783	2	0.018613	8583	160511_QHF_FH_JSI10i_1	51.43	35.991			0.93914	1.0239	0.84125	2	1	Median	NaN	NaN	NaN	0	0	Median	0.87972	1.0179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0026	1.0301	NaN	1	0	Median	86207000	44318000	41889000	0	0	0	38669000	21690000	16979000	0	0	0	47537000	22627000	24910000	17469	2409	16552	106314;106315	143361;143362	143362			2	
GAGQEQGMPAGK	1	Unmodified	1129.5186	0.51860675	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.619	9.8305	2	0.00029148	7322	160511_QHF_FH_JSI9i_1	75.509	64.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17470	5621	16553	106316	143363	143363			1	
GAGQQQSQEMMEVDR	0	Unmodified	1692.7196	0.71956776	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		27.692	26.902	2	1.2753E-35	23876	160511_QHF_FH_JSI10i_1	170.95	145.01			0.9369	0.89213	2.7928	2	1	Median	1.0972	0.87468	NaN	1	0	Median	0.80003	0.90992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50601000	26797000	23804000	25383000	13513000	11870000	25218000	13284000	11934000	0	0	0	0	0	0	17471	2673	16554	106317;106318;106319;106320	143364;143365;143366;143367	143366			4	
GAGSAMSTDAYPK	1	Unmodified	1254.5551	0.55505184	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	4	1				1				1	1	3	1	22.88	22.386	2	2.0019E-15	19318	160511_QHF_FH_JSI11i_1	162.38	156.08			0.81384	0.95219	21.054	5	2	Median	0.76954	0.62784	NaN	1	1	Median	0.81384	0.96734	NaN	1	1	Median	0.82225	0.82077	23.844	2	0	Median	0.90884	0.95219	NaN	1	0	Median	464030000	265230000	198800000	102150000	52187000	49961000	74764000	41558000	33206000	163250000	103930000	59316000	123870000	67553000	56319000	17472	720	16555	106321;106322;106323;106324;106325;106326	143368;143369;143370;143371;143372;143373;143374	143369			7	
GAGSAMSTDAYPK	1	Oxidation (M)	1270.55	0.54996646	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	1	0			By MS/MS		1	0	2											2		22.481	22.343	2	3.9014E-10	19313	160511_QHF_FH_JSI11i_1	115.57	99.944			0.73774	0.70231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73774	0.70231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21797000	12499000	9298100	0	0	0	0	0	0	21797000	12499000	9298100	0	0	0	17473	720	16555	106327;106328	143375;143376	143376		249	2	
GAGSAMSTDAYPKNPHLR	1	Acetyl (K)	1913.9054	0.90539469	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.707	37.222	3	0.041696	20916	160513_QHF_FH_JSI11Kac_5	36.593	32.689			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1432200	1432200	0	0	0	0	0	0	0	1432200	1432200	0	0	0	0	17474	720	16556	106329	143377	143377			1	
GAGSAQPEPQHFQPK	1	Unmodified	1577.7587	0.7586541	390	O43896	KIF1C	Kinesin-like protein KIF1C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.883	17.921	3	0.0064371	14468	160511_QHF_FH_JSI12i_3	48.177	36.201			0.80638	0.86037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80638	0.86037	NaN	1	1	Median	48167000	31866000	16301000	0	0	0	0	0	0	0	0	0	48167000	31866000	16301000	17475	390	16557	106330	143378	143378			1	
GAGSGELK	1	Unmodified	717.36572	0.36571815	1192;2527	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.48	4	3				2	1			2	3	3	2	5.6705	3.2283	2	0.00035515	3185	160511_QHF_FH_JSI10i_1	111.01	53.727			0.93566	1.029	8.5843	10	1	Median	1.3824	1.1419	10.47	2	1	Median	0.92457	1.1014	4.3208	3	0	Plateau	0.98895	0.97809	9.0989	3	0	Median	0.8907	0.96683	3.5976	2	0	Median	7081200000	3683200000	3397900000	1339100000	568200000	770910000	1947100000	1076100000	870920000	1932600000	1084900000	847700000	1862400000	953990000	908410000	17476	1192;2527	16558	106331;106332;106333;106334;106335;106336;106337;106338;106339;106340	143379;143380;143381;143382;143383;143384;143385;143386;143387;143388;143389;143390;143391	143382			13	
GAGSIAGASASPK	1	Unmodified	1072.5513	0.55128709	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	5.89	4	3	2			3	4			2	5	4	5	16.809	13.183	2	5.5954E-25	8304	160513_QHF_FH_JSI10Kac_3	168.3	135.46			0.96721	0.98707	12.899	14	1	Median	1.0154	0.84679	11.997	2	0	Median	0.76768	0.91183	13.854	4	1	Median	1.0275	1.0163	1.2191	3	0	Median	1.0279	1.1027	9.6696	5	0	Median	1993600000	994570000	999000000	408890000	192240000	216650000	570790000	310220000	260570000	448210000	214760000	233450000	565680000	277340000	288340000	17477	1085	16559	106341;106342;106343;106344;106345;106346;106347;106348;106349;106350;106351;106352;106353;106354;106355;106356	143392;143393;143394;143395;143396;143397;143398;143399;143400;143401;143402;143403;143404;143405;143406;143407;143408;143409;143410;143411;143412;143413;143414;143415;143416	143414			23	
GAGSVFR	0	Unmodified	692.36057	0.36057319	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.68	2	2	4					3	4	4	5	3	3	15.139	11.02	2	8.4597E-30	9953	160511_QHF_FH_JSI10i_3	207.2	85.326			1.0082	1.052	11.821	15	5	Median	1.2733	1.0734	8.9949	4	1	Median	0.92381	1.0994	13.307	5	2	Median	1.0327	0.97849	11.81	3	2	Median	0.84893	0.85772	10.914	3	0	Plateau	10445000000	4666100000	5779400000	4289400000	1706100000	2583300000	3583900000	1661400000	1922500000	1213900000	654000000	559930000	1358200000	644580000	713580000	17478	2039	16560	106357;106358;106359;106360;106361;106362;106363;106364;106365;106366;106367;106368;106369;106370;106371	143417;143418;143419;143420;143421;143422;143423;143424;143425;143426;143427;143428;143429;143430;143431	143419			15	
GAGSYTIMVLFADQATPTSPIR	0	Unmodified	2295.1569	0.15691793	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	92.759	84.41	2;3	0	47094	160513_QHF_FH_JSI9Kac_6	388.69	351.45			1.0965	1.0594	5.0766	8	0	Median	1.3051	1.1291	0.28837	2	0	Median	0.84462	1.0053	0.050987	2	0	Median	1.1267	1.0594	1.2319	2	0	Median	1.0215	1.0857	6.0983	2	0	Median	2318100000	1109200000	1208900000	643720000	284590000	359130000	698550000	371850000	326700000	524000000	233580000	290410000	451830000	219160000	232670000	17479	1192	16561	106372;106373;106374;106375;106376;106377;106378;106379	143432;143433;143434;143435;143436;143437;143438;143439;143440;143441	143434			10	
GAGSYTIMVLFADQATPTSPIR	0	Oxidation (M)	2311.1518	0.15183255	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	87.114	77.672	3	4.0157E-07	41508	160513_QHF_FH_JSI12Kac_6	121.21	99.607			0.93214	1.0032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93214	1.0032	NaN	1	1	Median	57110000	31897000	25213000	0	0	0	0	0	0	0	0	0	57110000	31897000	25213000	17480	1192	16561	106380	143442	143442		816	1	
GAGTDDHTLIR	0	Unmodified	1154.568	0.56799978	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.04	5.36	5	8	6				3	3		6	7	5	7	17.283	14.705	2;3	7.5115E-144	11945	160511_QHF_FH_JSI11i_2	301.78	271.09			0.97363	1.0333	11.16	25	1	Median	1.2219	1.0365	11.2	6	0	Median	0.86854	1.045	4.4707	7	0	Median	0.99416	0.98568	4.8452	5	0	Median	0.96394	1.0131	17.512	7	1	Median	9057000000	4629500000	4427600000	1398400000	612930000	785460000	2248100000	1174700000	1073400000	2321700000	1182400000	1139400000	3088800000	1659400000	1429400000	17481	916	16562	106381;106382;106383;106384;106385;106386;106387;106388;106389;106390;106391;106392;106393;106394;106395;106396;106397;106398;106399;106400;106401;106402;106403;106404;106405	143443;143444;143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460;143461;143462;143463;143464;143465;143466;143467;143468;143469;143470;143471;143472;143473;143474	143466			30	
GAGTDDSTLVR	0	Unmodified	1090.5255	0.52546627	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	22.8	15.453	2	5.6712E-07	10008	160513_QHF_FH_JSI11Kac_3	107.79	93.119			0.94674	0.94507	4.6831	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87484	1.0249	NaN	1	0	Median	0.94689	0.93348	NaN	1	0	Median	0.92661	0.98341	NaN	1	0	Median	32859000	17154000	15704000	0	0	0	5342400	2773900	2568500	15743000	8435700	7307400	11773000	5944900	5828200	17482	1170	16563	106406;106407;106408	143475;143476;143477;143478	143476			4	
GAGTDEK	1	Unmodified	676.30278	0.30278354	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			13.353	12.526	2	0.040929	9945	160511_QHF_FH_JSI10i_3	46.921	2.3898			1.038	1.2437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.038	1.2437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177650000	86488000	91161000	86369000	30483000	55886000	91280000	56005000	35275000	0	0	0	0	0	0	17483	891	16564	106409;106410	143479	143479			1	
GAGTGGLGLAVEGPSEAK	1	Unmodified	1569.7999	0.79985021	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.66	8	3	6			5	5			5	8	8	6	54.349	50.215	2;3	8.2099E-53	44133	160511_QHF_FH_JSI10i_2	265.95	249.57			1.054	1.0231	20.906	24	7	Median	1.1733	0.95666	19.196	5	2	Median	0.80201	0.93911	22.585	8	2	Median	1.0774	1.0403	22.89	6	2	Median	1.045	1.1098	21.511	5	1	Median	6463800000	3380600000	3083200000	1449800000	692980000	756800000	1756600000	967900000	788710000	1852600000	973670000	878940000	1404800000	746090000	658740000	17484	1192	16565	106411;106412;106413;106414;106415;106416;106417;106418;106419;106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430;106431;106432;106433;106434;106435;106436;106437	143480;143481;143482;143483;143484;143485;143486;143487;143488;143489;143490;143491;143492;143493;143494;143495;143496;143497;143498;143499;143500;143501;143502;143503;143504;143505;143506;143507;143508;143509;143510;143511;143512;143513;143514;143515	143512			35	
GAGTGLSEVR	0	Unmodified	945.48796	0.48795855	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.67	0.471	1	2									1	1	1	16.462	15.992	2	0.00018279	12892	160511_QHF_FH_JSI11i_2	82.426	52.259			0.82469	1.0051	19.063	3	1	Median	NaN	NaN	NaN	0	0	Median	0.82469	1.0051	NaN	1	1	Median	1.1263	1.1116	NaN	1	0	Median	0.76071	0.76872	NaN	1	0	Median	95087000	47948000	47138000	0	0	0	22872000	13217000	9654800	47497000	22350000	25147000	24718000	12381000	12337000	17485	3248	16566	106438;106439;106440	143516;143517;143518	143516			3	
GAGTNEDALIEILTTR	0	Unmodified	1672.8632	0.86317875	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	95.033	94.685	2;3	9.6454E-52	83232	160511_QHF_FH_JSI11i_2	214.47	190.87			1.014	1.039	7.6949	9	1	Median	1.1642	1.0378	11.219	2	0	Median	0.76916	0.94273	9.1986	2	0	Median	1.0576	1.0822	3.7375	3	1	Plateau	1.0124	1.0939	0.2979	2	0	Median	369450000	185330000	184130000	64365000	33643000	30722000	62732000	33586000	29146000	159530000	73461000	86065000	82830000	44636000	38194000	17486	1018	16567	106441;106442;106443;106444;106445;106446;106447;106448;106449	143519;143520;143521;143522;143523;143524;143525;143526;143527;143528;143529;143530;143531;143532;143533;143534	143531			16	
GAGTNEKVLTEIIASR	1	Acetyl (K)	1699.9105	0.9104633	916	P08758	ANXA5	Annexin A5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.627	71.076	2	0.021445	37632	160513_QHF_FH_JSI11Kac_5	59.185	44.765			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1745900	1745900	0	0	0	0	0	0	0	1745900	1745900	0	0	0	0	17487	916	16568	106450	143535	143535	670		1	
GAGWLFGAK	1	Unmodified	905.47594	0.4759373	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	3	1	1	1	62.063	59.66	2	1.9027E-05	49945	160511_QHF_FH_JSI10i_3	107.43	89.444			1.0089	1.0384	22.246	5	1	Linear	0.91686	0.77021	31.681	2	1	Median	0.78539	0.91712	NaN	1	0	Median	1.0089	0.95242	NaN	1	0	Median	1.0623	1.1143	NaN	1	0	Median	1526800000	760620000	766220000	359560000	168880000	190670000	306920000	165970000	140950000	325790000	153390000	172390000	534570000	272380000	262200000	17488	160	16569	106451;106452;106453;106454;106455;106456	143536;143537;143538;143539;143540;143541;143542;143543;143544	143538			9	
GAGYTFGQDISETFNHANGLTLVSR	0	Unmodified	2654.2725	0.27249305	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	2	2	3	2	89.51	87.148	3	7.2982E-91	78338	160511_QHF_FH_JSI12i_3	243.87	233.03			1.0646	1.0712	4.0978	9	0	Median	1.294	1.1018	3.9848	2	0	Median	0.90326	1.0746	4.3908	2	0	Median	1.1291	1.0423	3.0416	3	0	Plateau	1.0557	1.0956	8.2554	2	0	Median	1886600000	917890000	968670000	307760000	137630000	170120000	341310000	186190000	155120000	859050000	408610000	450440000	378440000	185450000	192990000	17489	2014;2065	16570	106457;106458;106459;106460;106461;106462;106463;106464;106465	143545;143546;143547;143548;143549;143550;143551;143552;143553;143554;143555;143556;143557;143558;143559;143560;143561;143562;143563	143563			19	
GAHGIIVVYDVTDQESFNNVK	1	Unmodified	2304.1386	0.13862533	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	1	1	3	4	74.863	69.959	2;3	3.9456E-89	37925	160513_QHF_FH_JSI10Kac_6	223.29	193.47			0.93378	0.91709	19.196	7	0	Median	1.0168	0.85196	NaN	1	0	Median	0.61496	0.72797	NaN	1	0	Median	1.1598	1.0991	30.035	2	0	Median	0.93378	0.96559	5.049	3	0	Median	1207100000	655040000	552110000	201850000	101470000	100370000	166080000	98794000	67288000	266020000	139270000	126750000	573190000	315500000	257690000	17490	2020	16571	106466;106467;106468;106469;106470;106471;106472;106473;106474	143564;143565;143566;143567;143568;143569;143570;143571;143572;143573;143574;143575;143576;143577;143578;143579	143578			16	
GAHGIIVVYDVTDQESYANVK	1	Unmodified	2277.1277	0.12772629	4642	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6.38		3	3						3	2		3	4	72.073	67.413	3	1.6978E-47	35360	160513_QHF_FH_JSI9Kac_6	176.94	164.45			0.85048	0.85985	27.042	6	2	Median	0.8736	0.7563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.12	1.0674	51.008	2	1	Median	0.82797	1.0337	10.989	3	1	Plateau	384840000	189390000	195450000	63766000	35892000	27874000	0	0	0	70389000	29549000	40840000	250690000	123950000	126740000	17491	4642	16572	106475;106476;106477;106478;106479;106480;106481;106482;106483	143580;143581;143582;143583;143584;143585;143586;143587;143588;143589	143586			10	
GAHLTALEMLTAFASHIR	0	Unmodified	1938.0146	0.014551212	4051	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	93.166	85.169	3;4	2.4065E-19	49500	160513_QHF_FH_JSI10Kac_6	147.07	136.12			1.127	1.0471	32.305	6	4	Median	1.4645	1.2408	39.639	2	1	Median	0.99189	1.1668	19.02	2	1	Median	1.1415	1.075	NaN	1	1	Median	0.59749	0.63641	NaN	1	1	Median	812740000	388220000	424520000	219720000	79249000	140470000	484240000	244020000	240220000	63735000	32879000	30855000	45042000	32067000	12975000	17492	4051	16573	106484;106485;106486;106487;106488;106489	143590;143591;143592;143593;143594;143595;143596	143594			7	
GAHPSGGADDVAK	1	Unmodified	1180.5473	0.54726434	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.84	8	8	2				6	2		4	6	8	8	6.4878	3.8688	2;3	2.007E-15	3576	160511_QHF_FH_JSI11i_2	162.36	86.982			0.93569	0.9795	11.889	25	5	Median	1.0671	0.88986	18.045	4	1	Median	0.79301	0.94924	7.924	6	0	Median	1.0354	1.0171	11.093	8	3	Median	0.91905	0.9795	10.038	7	1	Median	5391700000	2673600000	2718100000	808760000	376560000	432200000	1132100000	604060000	528040000	2056500000	984920000	1071600000	1394300000	708020000	686310000	17493	2252	16574	106490;106491;106492;106493;106494;106495;106496;106497;106498;106499;106500;106501;106502;106503;106504;106505;106506;106507;106508;106509;106510;106511;106512;106513;106514;106515	143597;143598;143599;143600;143601;143602;143603;143604;143605;143606;143607;143608;143609;143610;143611;143612;143613;143614;143615;143616;143617;143618;143619;143620;143621;143622;143623;143624;143625;143626;143627;143628;143629;143630	143619			34	
GAHSVGLMWWMLAR	0	2 Oxidation (M)	1645.7857	0.78573725	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									35	9	12	4	10	78.518	70.417	2;3	2.2021E-31	36071	160513_QHF_FH_JSI12Kac_6	173.28	147.84			0.93319	1.0055	18.375	34	14	Median	1.1484	0.9859	28.71	9	3	Median	0.86127	1.0106	8.2588	11	6	Median	1.0489	1.0117	5.4328	4	0	Median	0.95026	1.005	18.259	10	5	Median	10507000000	5421400000	5086000000	1918300000	876480000	1041800000	6443100000	3479200000	2963900000	509230000	241540000	267690000	1636800000	824120000	812650000	17494	917	16575	106516;106517;106518;106519;106520;106521;106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533;106534;106535;106536;106537;106538;106539;106540;106541;106542;106543;106544;106545;106546;106547;106548;106549;106550	143631;143632;143633;143634;143635;143636;143637;143638;143639;143640;143641;143642;143643;143644;143645;143646;143647;143648;143649;143650;143651;143652;143653;143654;143655;143656;143657;143658;143659;143660;143661;143662;143663;143664;143665;143666;143667	143645		497;498	35	
GAHSVGLMWWMLAR	0	Oxidation (M)	1629.7908	0.79082263	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	1.19				2					31	9	6	9	9	82.651	74.289	2;3	1.4014E-96	40865	160513_QHF_FH_JSI10Kac_6	249.23	223.11			1.0001	1.0079	23.785	30	11	Median	1.194	1.0268	24.431	8	3	Median	0.90019	1.0575	32.759	6	4	Median	1.0533	0.98915	20.342	9	2	Median	0.91579	0.95835	11.316	7	2	Median	15728000000	7786600000	7941600000	4919600000	2161600000	2758100000	6582400000	3495300000	3087100000	1987100000	972700000	1014400000	2239000000	1157000000	1082000000	17495	917	16575	106551;106552;106553;106554;106555;106556;106557;106558;106559;106560;106561;106562;106563;106564;106565;106566;106567;106568;106569;106570;106571;106572;106573;106574;106575;106576;106577;106578;106579;106580;106581;106582;106583	143668;143669;143670;143671;143672;143673;143674;143675;143676;143677;143678;143679;143680;143681;143682;143683;143684;143685;143686;143687;143688;143689;143690;143691;143692;143693;143694;143695;143696;143697;143698;143699;143700;143701;143702;143703;143704;143705	143697		497;498	37	
GAHSVGLMWWMLAR	0	Unmodified	1613.7959	0.79590801	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	1.96				7					30	7	12	12	6	87.839	79.783	2;3	2.2585E-67	44400	160513_QHF_FH_JSI10Kac_6	265.01	232.68			0.97222	0.99693	13.128	31	12	Median	1.2342	1.1323	11.922	7	4	Median	0.8152	0.94154	10.511	10	3	Median	1.2224	0.96387	11.581	8	2	Linear	0.99942	1.0567	17.558	6	3	Median	31954000000	14426000000	17527000000	15079000000	6056500000	9022900000	13074000000	6629100000	6445400000	2071100000	919260000	1151800000	1728600000	821220000	907420000	17496	917	16575	106584;106585;106586;106587;106588;106589;106590;106591;106592;106593;106594;106595;106596;106597;106598;106599;106600;106601;106602;106603;106604;106605;106606;106607;106608;106609;106610;106611;106612;106613;106614;106615;106616;106617;106618;106619;106620	143706;143707;143708;143709;143710;143711;143712;143713;143714;143715;143716;143717;143718;143719;143720;143721;143722;143723;143724;143725;143726;143727;143728;143729;143730;143731;143732;143733;143734;143735;143736;143737;143738;143739;143740;143741;143742;143743;143744;143745;143746;143747	143737			41	
GAHVTINAR	0	Unmodified	937.50936	0.50936269	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.6	5.2			4						1	2	3			10.464	8.6037	2;3	1.8438E-06	6859	160511_QHF_FH_JSI9i_3	129.68	96.325			0.95687	0.97626	7.6828	5	0	Median	1.2143	0.98805	4.5896	2	0	Median	0.83181	0.97626	10.2	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	770620000	381160000	389460000	488760000	237310000	251450000	281860000	143850000	138010000	0	0	0	0	0	0	17497	5346	16576	106621;106622;106623;106624;106625	143748;143749;143750;143751;143752;143753;143754;143755;143756	143753			9	
GAHVYAPGIVSASQFMK	1	Unmodified	1761.8872	0.88722543	3730	Q8TEA1	NSUN6	Putative methyltransferase NSUN6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.749	65.258	3	2.0773E-05	53614	160511_QHF_FH_JSI9i_3	81.311	70.456			0.7743	0.74166	22.437	2	0	Median	0.77934	0.63285	NaN	1	0	Median	0.76929	0.86918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55401000	30924000	24477000	26546000	13663000	12883000	28855000	17261000	11594000	0	0	0	0	0	0	17498	3730	16577	106626;106627	143757;143758	143758			2	
GAIDDLQQGELEAFIQNLNLAK	1	Unmodified	2399.2333	0.233254	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.22	102.04	3	3.4138E-07	88008	160511_QHF_FH_JSI12i_2	94.707	86.715			0.97748	1.0977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97748	1.0977	NaN	1	1	Median	94341000	45831000	48510000	0	0	0	0	0	0	0	0	0	94341000	45831000	48510000	17499	2213	16578	106628	143759	143759			1	
GAIENLLAK	1	Unmodified	927.53893	0.53893149	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	52.463	51.743	2	0.00030831	45390	160511_QHF_FH_JSI9i_2	93.143	38.367			0.87416	0.84597	43.075	5	3	Median	0.45356	0.38522	NaN	1	1	Median	0.40426	0.49005	NaN	1	1	Median	0.91743	0.84597	NaN	1	0	Median	0.93106	0.96685	12.894	2	1	Median	264050000	147590000	116450000	52094000	33640000	18454000	52113000	33587000	18525000	38777000	18452000	20324000	121070000	61915000	59151000	17500	5461	16579	106629;106630;106631;106632;106633;106634;106635	143760;143761;143762;143763;143764;143765;143766	143762			6	
GAIETYQEVASLPDVPADLLK	1	Unmodified	2228.1576	0.15762944	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	101.25	101.14	2;3	3.1483E-46	91847	160511_QHF_FH_JSI11i_1	256.81	227.47			1.0367	1.0489	15.857	7	2	Median	1.0833	0.89124	6.7321	2	2	Median	0.88673	1.0421	2.2859	2	0	Median	1.266	1.2371	19.554	2	0	Median	0.99991	1.0489	NaN	1	0	Median	1738300000	853100000	885250000	279060000	139040000	140020000	586070000	319950000	266120000	571160000	264050000	307120000	302060000	130060000	172000000	17501	2307	16580	106636;106637;106638;106639;106640;106641;106642	143767;143768;143769;143770;143771;143772;143773;143774;143775;143776	143769			10	
GAIEVLIR	0	Unmodified	869.53345	0.53345218	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.25	6.26			2					1	1		2	1	1	55.987	52.35	2	0.00026835	44816	160511_QHF_FH_JSI12i_3	114.78	65.424			1.1661	1.1937	7.0419	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86816	1.0393	NaN	1	0	Median	1.214	1.1391	NaN	1	0	Median	1.1661	1.1937	NaN	1	0	Median	193370000	93035000	100330000	0	0	0	23085000	10807000	12278000	58519000	27869000	30650000	111760000	54359000	57402000	17502	1679	16581	106643;106644;106645;106646	143777;143778;143779;143780;143781	143780			5	
GAIILAK	1	Unmodified	684.45341	0.45341094	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.19	6.34	4	5	5			2	5	7	4	5	9	11	7	34.955	29.29	1;2	0.0012098	16995	160513_QHF_FH_JSI11Kac_5	109.88	63.529			0.99982	1.0206	44.4	32	3	Median	1.0966	0.91265	7.748	5	0	Median	0.94215	1.0934	42.664	9	0	Median	1.0328	1.0156	61.267	11	3	Median	1.0241	1.1119	30.745	7	0	Median	11723000000	5673400000	6049200000	1781800000	833600000	948170000	2318200000	1195000000	1123100000	5006800000	2408400000	2598400000	2615900000	1236400000	1379500000	17503	1084	16582	106647;106648;106649;106650;106651;106652;106653;106654;106655;106656;106657;106658;106659;106660;106661;106662;106663;106664;106665;106666;106667;106668;106669;106670;106671;106672;106673;106674;106675;106676;106677;106678	143782;143783;143784;143785;143786;143787;143788;143789;143790;143791;143792;143793;143794;143795;143796;143797;143798;143799;143800;143801;143802;143803;143804;143805;143806;143807;143808;143809;143810;143811;143812;143813;143814;143815;143816;143817;143818;143819;143820;143821;143822;143823;143824;143825;143826;143827;143828;143829;143830;143831;143832;143833;143834;143835;143836;143837;143838;143839;143840;143841	143826			60	
GAILLSVAR	0	Unmodified	898.56	0.56000128	1134	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.8	0.433								1	3	2	1	1		60.28	50.795	2	0.015556	27541	160513_QHF_FH_JSI11Kac_6	51.346	24.344			1.1128	0.95425	12.952	4	0	Median	1.1128	0.95425	5.2323	2	0	Median	0.71697	0.85766	NaN	1	0	Median	1.1781	1.1601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78319000	41356000	36962000	14595000	6411600	8183800	39363000	22821000	16543000	24360000	12124000	12236000	0	0	0	17504	1134	16583	106679;106680;106681;106682	143842;143843;143844	143842			2	
GAILSEEELAAMSPTAAAVAK	1	Unmodified	2029.0402	0.04015684	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	85.948	85.492	2;3	3.2024E-24	77563	160511_QHF_FH_JSI10i_1	186.56	164.03			0.93695	0.90038	11.702	8	3	Median	1.087	0.91429	2.9542	2	1	Median	0.70681	0.82226	8.8298	2	1	Median	0.9157	0.89971	19.667	2	1	Median	0.93695	0.98687	12.186	2	0	Median	835840000	417690000	418150000	147360000	58847000	88516000	233980000	146210000	87770000	225070000	106510000	118560000	229440000	106130000	123300000	17505	1016	16584	106683;106684;106685;106686;106687;106688;106689;106690	143845;143846;143847;143848;143849;143850;143851;143852;143853;143854;143855;143856;143857;143858;143859;143860;143861;143862;143863	143857			19	
GAILTGPPGTGK	1	Unmodified	1067.5975	0.597509	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	34.432	33.771	2	4.3469E-05	28809	160511_QHF_FH_JSI11i_2	101.38	96.179			1.1676	1.0769	24.632	6	2	Median	1.1761	0.9994	NaN	1	0	Median	1.1617	1.4204	NaN	1	0	Median	1.1734	1.1604	NaN	1	0	Median	0.89216	0.9583	32.42	3	2	Median	224120000	104660000	119460000	51817000	21956000	29861000	45039000	21844000	23195000	44126000	15401000	28725000	83142000	45457000	37684000	17506	5640	16585	106691;106692;106693;106694;106695;106696	143864;143865;143866;143867;143868;143869	143865			5	
GAILTTMLVSR	0	Oxidation (M)	1176.6536	0.65364367	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	1	0	By MS/MS	By matching			15.5	0.5								1	1	1	1			61.586	52.046	2	0.001501	27517	160513_QHF_FH_JSI9Kac_5	74.162	45.763			1.2584	1.2502	41.754	2	0	Median	1.1244	0.9306	NaN	1	0	Median	1.4083	1.6796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19996000	8917200	11079000	10046000	4490000	5556000	9950100	4427200	5522900	0	0	0	0	0	0	17507	2439	16586	106697;106698	143870	143870		1957	1	
GAILTTMLVSR	0	Unmodified	1160.6587	0.65872905	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.32	67.81	2	1.332E-07	36934	160513_QHF_FH_JSI10Kac_6	116.52	65.172			0.85594	1.0287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85594	1.0287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123870000	64826000	59043000	0	0	0	123870000	64826000	59043000	0	0	0	0	0	0	17508	2439	16586	106699	143871	143871			1	
GAIQFVTHYQHSSTQR	0	Unmodified	1858.9074	0.9074436	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	4	2	3	41.787	32.721	3;4	1.4845E-24	17767	160513_QHF_FH_JSI9Kac_6	146.16	116.43			0.92347	0.97905	15.477	10	3	Median	1.1487	0.97905	1.6987	2	0	Median	0.81102	0.9563	9.8075	4	3	Median	0.86782	0.83025	10.291	2	0	Median	1.1288	1.2441	9.9008	2	0	Median	243510000	112540000	130970000	44279000	20937000	23341000	162930000	73131000	89803000	18367000	9411300	8955600	17930000	9063000	8866600	17509	2675	16587	106700;106701;106702;106703;106704;106705;106706;106707;106708;106709;106710;106711;106712	143872;143873;143874;143875;143876;143877;143878;143879;143880;143881;143882;143883;143884;143885;143886;143887;143888;143889	143877			14	
GAIQFVTQYQHSSGQR	0	Unmodified	1805.8809	0.8808945	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	52.422	43.225	2;3	8.6424E-64	23784	160513_QHF_FH_JSI10Kac_6	210.9	184.78			0.99281	1.0711	7.1997	5	0	Median	1.2427	1.0761	NaN	1	0	Median	0.81034	0.96971	5.5561	2	0	Median	1.1326	1.1225	NaN	1	0	Median	0.99281	1.0711	NaN	1	0	Median	259960000	138390000	121570000	47368000	24224000	23144000	161010000	86556000	74456000	34049000	18123000	15926000	17536000	9488600	8047800	17510	2674	16588	106713;106714;106715;106716;106717;106718	143890;143891;143892;143893;143894;143895;143896;143897;143898;143899;143900	143898			11	
GAIQLGITHTVGSLSTKPER	1	Unmodified	2064.1328	0.13275209	4312	Q99755	PIP5K1A	Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			63.712	55.451	4	0.0015904	30613	160513_QHF_FH_JSI10Kac_6	51.348	36.875			0.78331	0.93432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78331	0.93432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28153000	15497000	12656000	0	0	0	28153000	15497000	12656000	0	0	0	0	0	0	17511	4312	16589	106719	143901	143901			1	
GAISAEVYTEEDAASYVRK	1	Unmodified	2057.9906	0.99056411	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	57.594	57.059	3	9.6653E-14	50569	160511_QHF_FH_JSI11i_3	141.86	110.91			1.2728	0.96758	16.791	4	0	Linear	0.89646	0.7562	NaN	1	0	Median	0.75255	0.92029	NaN	1	0	Median	1.2089	1.1197	NaN	1	0	Median	0.9934	1.0173	NaN	1	0	Median	282240000	157700000	124540000	64813000	39529000	25284000	62244000	39579000	22665000	88474000	40537000	47937000	66704000	38054000	28650000	17512	977	16590	106720;106721;106722;106723	143902;143903;143904;143905;143906	143902			5	
GAIVHYTILNNHVYR	0	Unmodified	1768.9373	0.93728717	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	3	2	1	56.128	46.862	2;3;4	4.2327E-63	25609	160513_QHF_FH_JSI10Kac_6	205.87	185.22			1.0069	1.0006	37.887	6	1	Median	1.0313	0.88347	NaN	1	0	Median	0.81785	0.94484	25.706	2	0	Median	0.95075	0.93424	70.063	2	1	Median	1.316	1.4336	NaN	1	0	Median	368940000	201470000	167480000	51382000	22761000	28620000	260760000	151070000	109690000	40515000	20138000	20377000	16280000	7495400	8784900	17513	3272	16591	106724;106725;106726;106727;106728;106729;106730	143907;143908;143909;143910;143911;143912;143913;143914;143915	143913			9	
GAKEEHGGLIR	1	Acetyl (K)	1207.6309	0.63093439	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15	0								2			1		1	23.609	14.467	3	0.0014007	8943	160513_QHF_FH_JSI10Kac_5	60.641	45.63			0.77654	0.88774	34.845	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95347	1.1358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63244	0.69387	NaN	1	0	Median	6943800	3919000	3024800	0	0	0	3834300	2213900	1620400	0	0	0	3109600	1705200	1404400	17514	1274	16592	106731;106732	143916;143917	143917	1183		2	
GAKEGIILFK	2	Acetyl (K)	1116.6543	0.6542956	840	P05455	SSB	Lupus La protein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.747	66.112	2	0.0053428	35195	160513_QHF_FH_JSI11Kac_5	75.378	44.305			0.041657	0.039972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.041657	0.039972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2161600	2095500	66071	0	0	0	0	0	0	2161600	2095500	66071	0	0	0	17515	840	16593	106733	143918	143918	491		1	
GAKLCVVK	2	Acetyl (K)	915.52117	0.52117293	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						2	2				1	1	2	40.629	31.453	2	0.0049275	18769	160513_QHF_FH_JSI11Kac_4	86.833	59.871			0.81519	0.86849	28.964	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78146	0.86849	NaN	1	0	Median	0.81519	0.80318	NaN	1	0	Median	1.2751	1.373	NaN	1	0	Median	9159200	5109500	4049800	0	0	0	1057400	556100	501270	6428100	3846600	2581600	1673700	706790	966910	17516	5063	16594	106734;106735;106736;106737	143919;143920;143921;143922	143919	3303		4	
GAKLTPEEEEILNK	2	Acetyl (K)	1611.8356	0.83556702	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						5					2	1	2	70.467	61.095	2;3	0.0020036	30512	160513_QHF_FH_JSI10Kac_3	55.213	35.635			0.88603	0.91733	58.552	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5597	1.8336	NaN	1	0	Median	0.88603	0.91733	NaN	1	0	Median	0.53443	0.57246	NaN	1	0	Median	20266000	11553000	8713200	0	0	0	7198600	4195600	3003000	1004700	618320	386390	12063000	6738900	5323800	17517	1985	16595	106738;106739;106740;106741;106742	143923;143924;143925;143926	143925	2006		4	
GAKNGKNAK	3	2 Acetyl (K)	970.51959	0.51959303	1154	P19338	NCL	Nucleolin	yes	yes	2	0	0	2				By MS/MS	13	0						1							1	6.1038	-1.0481	2	0.0027525	2174	160513_QHF_FH_JSI12Kac_3	95.741	58.981			0.65883	0.71907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65883	0.71907	NaN	1	0	Median	5742100	3445800	2296400	0	0	0	0	0	0	0	0	0	5742100	3445800	2296400	17518	1154	16596	106743	143927	143927	1013;1014		1	
GAKPVVVLQK	2	Acetyl (K)	1079.6703	0.67028001	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.943					2	3	3	1			3	2	4	55.232	45.294	2	1.2052E-05	25764	160513_QHF_FH_JSI11Kac_4	109.48	58.286			1.1192	1.1	20.742	9	0	Median	NaN	NaN	NaN	0	0	Median	0.70634	0.84821	6.4271	3	0	Median	1.148	1.12	5.4633	2	0	Median	1.1597	1.2469	9.8172	4	0	Median	229150000	113020000	116120000	0	0	0	72197000	43563000	28633000	66179000	28177000	38002000	90770000	41284000	49486000	17519	3063	16597	106744;106745;106746;106747;106748;106749;106750;106751;106752	143928;143929;143930;143931;143932;143933;143934;143935;143936;143937;143938;143939	143932	2752		12	
GAKPVVVLQK	2	Unmodified	1037.6597	0.65971533	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				24.229	22.909	3	0.018048	18518	160511_QHF_FH_JSI9i_3	35.908	21.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17520	3063	16597	106753	143940	143940			1	
GALAEAR	0	Unmodified	686.37114	0.37113788	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	6.7899	6.1969	2	0.025458	3842	160511_QHF_FH_JSI12i_2	54.571	12.342			0.83191	0.91578	9.5011	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83191	0.91578	9.5011	2	0	Median	467330000	250130000	217200000	0	0	0	0	0	0	0	0	0	467330000	250130000	217200000	17521	1139	16598	106754;106755	143941;143942	143941			2	
GALAEARK	1	Unmodified	814.4661	0.4661009	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			5.8535	5.3439	2	0.00055336	3404	160511_QHF_FH_JSI10i_3	104.75	53.411			0.99284	0.94571	11.57	2	0	Median	1.2784	1.0263	NaN	1	0	Median	0.77107	0.87142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	366340000	179470000	186870000	222150000	94699000	127460000	144180000	84772000	59411000	0	0	0	0	0	0	17522	1139	16599	106756;106757	143943	143943			1	
GALAETGAGAKK	2	Unmodified	1072.5877	0.58767259	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	7.8529	7.9506	2	0.0042941	5421	160511_QHF_FH_JSI12i_3	59.426	40.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17523	2108	16600	106758	143944	143944			1	
GALAKLVEAIR	1	Acetyl (K)	1181.7132	0.71320746	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.783	74.467	2	0.00019453	41139	160513_QHF_FH_JSI11Kac_6	90.827	64.889			0.36279	0.34718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36279	0.34718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65838000	48069000	17769000	0	0	0	0	0	0	65838000	48069000	17769000	0	0	0	17524	2007	16601	106759	143945	143945	2036		1	
GALALAQAVQR	0	Unmodified	1096.6353	0.63529149	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.62	1	3	3					3	3	4	2	4	3	50.266	45.238	2	2.0564E-29	39562	160511_QHF_FH_JSI9i_2	183.9	154.73			0.97444	0.90235	25.225	13	1	Median	1.1376	0.95144	17.49	4	1	Median	0.98213	1.2108	47.604	2	0	Median	0.86073	0.84914	16.473	4	0	Median	0.88178	0.8884	18.766	3	0	Plateau	978960000	473780000	505180000	504940000	225500000	279440000	112780000	58703000	54082000	271450000	145350000	126100000	89791000	44236000	45555000	17525	1004	16602	106760;106761;106762;106763;106764;106765;106766;106767;106768;106769;106770;106771;106772	143946;143947;143948;143949;143950;143951;143952;143953;143954;143955;143956;143957	143950			10	
GALALEEK	1	Unmodified	829.45453	0.45453316	1436	P35579	MYH9	Myosin-9	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	1	2	2	24.915	24.14	2	0.00018193	20093	160511_QHF_FH_JSI11i_2	122.13	59.411			1.0193	0.95442	15.163	8	0	Median	1.1437	0.92219	13.324	3	0	Median	1.012	1.1958	NaN	1	0	Median	0.94488	0.94903	5.5102	2	0	Median	1.0086	1.1049	25.412	2	0	Median	3348000000	1636300000	1711700000	799900000	364480000	435410000	506910000	228420000	278480000	1165500000	590580000	574890000	875710000	452780000	422930000	17526	1436	16603	106773;106774;106775;106776;106777;106778;106779;106780	143958;143959;143960;143961;143962;143963;143964;143965;143966;143967;143968	143968			11	
GALAYYKK	2	Unmodified	912.5069	0.50690308	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			16.836	15.774	2;3	0.020203	12544	160511_QHF_FH_JSI9i_3	63.287	41.156			4.329	4.2878	213.96	2	1	Median	22.65	19.467	NaN	1	1	Median	0.82739	0.94447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30363000	13582000	16781000	6747800	90843	6657000	23615000	13491000	10124000	0	0	0	0	0	0	17527	3115	16604	106781;106782;106783	143969;143970;143971	143971			3	
GALDTTDGYMGVNQAPEK	1	Unmodified	1865.8465	0.84654241	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.881	48.664	2	2.4779E-11	43287	160511_QHF_FH_JSI9i_1	113.69	97.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17528	5458	16605	106784	143972	143972			1	
GALEAYVQSVR	0	Unmodified	1191.6248	0.62478638	5455	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			51.623	50.682	2	0.0050779	44752	160511_QHF_FH_JSI10i_2	63.624	36.509			1.1076	1.3363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1076	1.3363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43055000	19858000	23197000	0	0	0	43055000	19858000	23197000	0	0	0	0	0	0	17529	5455	16606	106785	143973	143973			1	
GALEGSSCPFR	0	Unmodified	1179.5343	0.53425682	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	31.87	31.014	2	2.0626E-09	26255	160511_QHF_FH_JSI12i_2	131.44	105.7			0.9832	1.0245	28.867	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84991	0.83534	NaN	1	0	Median	1.1374	1.2565	NaN	1	0	Median	86359000	40621000	45738000	0	0	0	0	0	0	55643000	28399000	27244000	30716000	12222000	18494000	17530	1355	16607	106786;106787	143974;143975	143974			1	
GALEMVQMAVEAK	1	Unmodified	1375.684	0.68395752	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	77.394	77.056	2	4.5225E-41	66964	160511_QHF_FH_JSI12i_3	206.11	178.1			1.0426	1.1299	5.1843	3	1	Plateau	1.2887	1.1299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1897	1.1308	NaN	1	0	Median	1.0022	1.0333	NaN	1	0	Median	487250000	217610000	269650000	45831000	19860000	25971000	0	0	0	129280000	62092000	67185000	312140000	135650000	176490000	17531	347	16608	106788;106789;106790	143976;143977;143978	143978			2	
GALFQAHAR	0	Unmodified	969.51445	0.51444807	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			17.016	15.954	3	0.0007854	12701	160511_QHF_FH_JSI9i_3	50.04	40.826			1.1087	1.0791	0.35978	2	0	Median	1.3089	1.0819	NaN	1	0	Median	0.93902	1.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68548000	33897000	34651000	31907000	14997000	16910000	36641000	18900000	17741000	0	0	0	0	0	0	17532	3313	16609	106791;106792	143979;143980;143981	143981			3	
GALFQEISSNDISSK	1	Unmodified	1594.7839	0.7838658	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	64.261	63.343	2	5.4779E-05	55139	160511_QHF_FH_JSI11i_2	117.79	90.678			0.40405	0.41625	13.451	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46137	0.45778	NaN	1	0	Median	0.35385	0.37848	NaN	1	0	Median	52157000	35765000	16392000	0	0	0	0	0	0	26119000	16448000	9671100	26037000	19317000	6720400	17533	3901	16610	106793;106794	143982;143983	143983			2	
GALGLGSCHFTGK	1	Unmodified	1303.6343	0.63430521	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	38.053	37.275	2;3	2.4426E-12	31678	160511_QHF_FH_JSI12i_3	121.36	92.274			1.116	1.5	19.155	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.9573	1.106	20.582	2	2	Median	1.1194	1.0579	NaN	1	0	Median	1.4304	1.4673	NaN	1	0	Median	247910000	107710000	140200000	0	0	0	89560000	40543000	49017000	25601000	11412000	14189000	132750000	55757000	76995000	17534	3620	16611	106795;106796;106797;106798;106799	143984;143985;143986;143987;143988	143988			5	
GALGSIALLGLVGTTVCSAFQHLGWVK	1	Unmodified	2754.4891	0.48909153	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	4	3	2	1	101.88	93.662	2;3;4	4.2892E-284	53201	160513_QHF_FH_JSI11Kac_6	336	313.75			0.93012	0.98575	17.496	10	4	Median	1.2723	1.1393	5.4338	4	3	Median	0.81218	0.89411	2.7743	3	1	Plateau	0.77502	0.7367	0.7716	2	0	Median	1.0632	1.117	NaN	1	0	Median	19667000000	10576000000	9090600000	8654600000	3733400000	4921200000	7479500000	4927200000	2552300000	2492000000	1396500000	1095400000	1040500000	518820000	521700000	17535	214	16612	106800;106801;106802;106803;106804;106805;106806;106807;106808;106809	143989;143990;143991;143992;143993;143994;143995;143996;143997;143998;143999;144000;144001;144002;144003;144004	143989			16	
GALILSNVQPSDTMVTQCEAR	0	Unmodified	2289.1093	0.10931581	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	72.163	71.588	2	3.7366E-70	65179	160511_QHF_FH_JSI12i_1	227.42	206.58			1.6996	1.702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6996	1.702	NaN	1	0	Median	25068000	14822000	10246000	0	0	0	0	0	0	0	0	0	25068000	14822000	10246000	17536	1388	16613	106810;106811	144005;144006	144005			2	
GALINVPPPFLGLPR	0	Unmodified	1559.9188	0.91878356	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	101.26	101.15	2;3	2.1465E-05	87848	160511_QHF_FH_JSI12i_3	123.86	88.976			0.99558	1.0325	8.2608	9	0	Median	1.3117	1.0787	5.3287	2	0	Median	0.8913	1.0325	6.7331	3	0	Median	0.95614	0.93647	11.385	2	0	Median	0.99075	1.0573	4.7148	2	0	Median	2806600000	1360800000	1445800000	482810000	205830000	276980000	700600000	362160000	338440000	817540000	405500000	412040000	805620000	387260000	418360000	17537	1283	16614	106812;106813;106814;106815;106816;106817;106818;106819;106820	144007;144008;144009;144010;144011;144012;144013;144014;144015;144016;144017;144018	144018			12	
GALIVLEGVDR	0	Unmodified	1140.6503	0.65027285	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.34			2				1	4		1	2	2	2	72.923	65.34	2	6.8023E-05	34621	160513_QHF_FH_JSI11Kac_5	96.331	27.91			0.97712	1.0132	33.068	7	1	Median	0.84105	0.71178	NaN	1	0	Median	0.8238	0.97059	27.214	2	0	Median	1.4424	1.3773	43.417	2	1	Median	0.97206	1.0291	28.679	2	0	Median	133480000	59012000	74470000	7298500	3846300	3452200	10167000	5633200	4533900	65218000	23767000	41451000	50798000	25765000	25033000	17538	1241	16615	106821;106822;106823;106824;106825;106826;106827	144019;144020;144021;144022;144023;144024;144025;144026;144027;144028	144023			10	
GALLELLK	1	Unmodified	855.54295	0.54295423	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	75.003	74.172	2	0.0014643	64325	160511_QHF_FH_JSI12i_3	89.142	57.853			1.0767	1.1197	14.409	7	1	Median	1.4583	1.2521	NaN	1	0	Median	0.77058	0.93827	22.191	2	1	Median	1.1975	1.1533	4.1747	2	0	Median	1.0443	1.0805	5.9337	2	0	Median	146060000	75461000	70599000	6879700	3461700	3418000	25170000	14441000	10729000	39329000	19016000	20313000	74681000	38542000	36139000	17539	3266	16616	106828;106829;106830;106831;106832;106833;106834	144029;144030;144031;144032	144032			4	
GALLLALLLAR	0	Unmodified	1122.7489	0.74886468	5736	Q9Y6M0;Q7RTY9	PRSS21;PRSS41	Testisin;Putative serine protease 41	yes	no	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			97.416	90.002	2	1.2837E-31	50652	160513_QHF_FH_JSI9Kac_6	196.25	166.87			1.0872	1.1106	11.012	2	2	Median	1.1764	1.0274	NaN	1	1	Median	1.0047	1.2005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	621590000	217640000	403950000	304320000	94572000	209750000	317270000	123070000	194200000	0	0	0	0	0	0	17540	5736	16617	106835;106836;106837	144033;144034;144035	144033			3	
GALLLSSIELEELK	1	Unmodified	1513.8603	0.86032521	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	97.964	97.705	2	0.0018791	84001	160511_QHF_FH_JSI12i_2	59.542	44.57			0.89099	0.88869	36.394	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72713	0.68705	NaN	1	0	Median	1.0918	1.1495	NaN	1	0	Median	23295000	11245000	12050000	0	0	0	0	0	0	15963000	7846200	8116500	7332600	3398700	3933900	17541	2574	16618	106838;106839	144036;144037	144036			1	
GALLPLSIR	0	Unmodified	938.5913	0.59130141	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		3	0			3							1	1	1		70.707	69.725	2	0.046963	61991	160511_QHF_FH_JSI11i_3	56.378	27.229			1.1294	0.92022	11.628	3	0	Plateau	1.1294	0.92022	NaN	1	0	Median	0.64769	0.7696	NaN	1	0	Median	1.0098	0.95727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70226000	34971000	35255000	27114000	11505000	15609000	18848000	11752000	7096600	24264000	11715000	12549000	0	0	0	17542	4159	16619	106840;106841;106842	144038	144038			0	
GALLVFAEHR	0	Unmodified	1111.6138	0.61382777	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	3	1	2	1	56.579	49.731	2;3	5.2301E-07	27241	160513_QHF_FH_JSI11Kac_6	99.815	85.608			1.1935	1.1364	7.9545	7	0	Median	1.3564	1.1516	10.802	3	0	Median	1.0032	1.1893	NaN	1	0	Median	1.1589	1.0987	4.7681	2	0	Median	0.96929	1.0163	NaN	1	0	Median	272060000	133230000	138830000	114710000	49809000	64905000	37779000	19718000	18061000	87281000	44740000	42541000	32286000	18964000	13322000	17543	5305	16620	106843;106844;106845;106846;106847;106848;106849	144039;144040;144041;144042;144043;144044;144045;144046;144047;144048	144040			9	
GALLYMYCHSLTK	1	Unmodified	1555.7527	0.75270579	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	3	3	4	4	66.92	60.712	2;3	1.3236E-62	33175	160513_QHF_FH_JSI10Kac_6	221.23	166.62			1.1462	1.0719	28.152	12	4	Median	1.1671	0.994	11.56	3	1	Median	0.86988	1.0286	15.55	3	1	Median	1.1835	1.0939	11.292	3	1	Median	1.7428	1.8507	39.98	3	1	Median	907770000	439440000	468330000	193290000	94258000	99028000	267270000	140130000	127150000	322660000	161580000	161080000	124550000	43473000	81080000	17544	24	16621	106850;106851;106852;106853;106854;106855;106856;106857;106858;106859;106860;106861;106862;106863	144049;144050;144051;144052;144053;144054;144055;144056;144057;144058;144059;144060;144061;144062;144063;144064;144065;144066;144067;144068	144067			20	
GALLYMYCHSLTK	1	Oxidation (M)	1571.7476	0.74762041	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	1	0	By MS/MS			By matching	16	0									2	1			1	59.464	49.957	3	0.00095429	26521	160513_QHF_FH_JSI9Kac_6	59.77	47.978			1.6318	1.54	27.016	2	0	Median	1.5617	1.2722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.705	1.8641	NaN	1	0	Median	23608000	9621000	13987000	15341000	7037000	8303900	0	0	0	0	0	0	8266800	2583900	5682900	17545	24	16621	106864;106865	144069	144069		6	1	
GALNPADITVLFK	1	Unmodified	1357.7606	0.76055158	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	100.05	99.911	2	5.8187E-05	86030	160511_QHF_FH_JSI12i_2	112.15	76.204			1.0199	1.0269	6.9558	4	2	Median	1.145	0.99972	NaN	1	1	Median	0.77566	0.95246	NaN	1	1	Median	1.0344	1.0549	NaN	1	0	Median	1.0056	1.1194	NaN	1	0	Median	98361000	47637000	50724000	18981000	8224500	10757000	23612000	12806000	10806000	27842000	12810000	15032000	27926000	13796000	14130000	17546	3440	16622	106866;106867;106868;106869;106870;106871	144070;144071;144072;144073;144074;144075;144076;144077	144070			8	
GALPDDTEALQSLIDTHK	1	Unmodified	1922.9585	0.9585357	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.877	82.514	3	0.060798	75201	160511_QHF_FH_JSI11i_1	22.108	12.008			0.5607	0.53872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5607	0.53872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33234000	20745000	12489000	0	0	0	0	0	0	33234000	20745000	12489000	0	0	0	17547	5458	16623	106872	144078	144078			1	
GALPLDTVTFYK	1	Unmodified	1323.7075	0.70745338	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	80.39	76.097	2	8.0925E-11	71193	160511_QHF_FH_JSI10i_1	147.12	118.03			0.99741	0.9826	10.782	19	0	Median	1.0808	0.90057	8.8521	4	0	Median	0.81465	0.96726	4.1471	5	0	Median	1.0104	1.006	4.2127	5	0	Median	1.0179	1.0659	8.7859	5	0	Median	5776000000	2957200000	2818800000	1162900000	574950000	587960000	1275900000	681790000	594090000	1987700000	999220000	988460000	1349600000	701290000	648290000	17548	1332	16624	106873;106874;106875;106876;106877;106878;106879;106880;106881;106882;106883;106884;106885;106886;106887;106888;106889;106890;106891	144079;144080;144081;144082;144083;144084;144085;144086;144087;144088;144089;144090;144091;144092;144093;144094;144095;144096;144097;144098;144099;144100;144101;144102;144103;144104;144105;144106;144107;144108;144109;144110;144111;144112;144113;144114;144115;144116;144117;144118;144119;144120;144121;144122;144123	144097			45	
GALQAVDQLSLFRPLCK	1	Unmodified	1915.035	0.034952303	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		90.354	89.791	3	1.9638E-08	79963	160511_QHF_FH_JSI11i_3	137.52	106.13			0.80704	0.70232	8.3305	2	1	Median	0.92505	0.74493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70409	0.66214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83373000	48992000	34381000	24205000	12839000	11365000	0	0	0	59169000	36153000	23016000	0	0	0	17549	10	16625	106892;106893	144124;144125;144126	144125			3	
GALQDALR	0	Unmodified	842.46102	0.46101552	709	O95613	PCNT	Pericentrin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		66.022	65.586	2	0.033293	59680	160511_QHF_FH_JSI11i_1	49.358	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7769700	7769700	0	0	0	0	0	0	0	7769700	7769700	0	0	0	0	17550	709	16626	106894	144127	144127			1	
GALQNIIPASTGAAK	1	Unmodified	1410.7831	0.78307794	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.06	19	10	12	1	7	11	17	13	4	18	24	24	28	61.32	54.91	2;3	4.6963E-63	6843	160513_QHF_FH_JSI9Kac_3	215.08	134.39			0.97185	0.9923	49.153	86	30	Median	1.2099	1.0052	93.692	16	4	Median	0.85135	0.92981	31.181	22	7	Median	0.97114	0.9423	28.084	23	10	Median	1.0433	1.0824	29.923	25	9	Median	205290000000	97023000000	108270000000	23729000000	10258000000	13471000000	34773000000	18346000000	16427000000	70143000000	31641000000	38502000000	76648000000	36778000000	39870000000	17551	812	16627	106895;106896;106897;106898;106899;106900;106901;106902;106903;106904;106905;106906;106907;106908;106909;106910;106911;106912;106913;106914;106915;106916;106917;106918;106919;106920;106921;106922;106923;106924;106925;106926;106927;106928;106929;106930;106931;106932;106933;106934;106935;106936;106937;106938;106939;106940;106941;106942;106943;106944;106945;106946;106947;106948;106949;106950;106951;106952;106953;106954;106955;106956;106957;106958;106959;106960;106961;106962;106963;106964;106965;106966;106967;106968;106969;106970;106971;106972;106973;106974;106975;106976;106977;106978;106979;106980;106981;106982;106983;106984;106985;106986;106987;106988	144128;144129;144130;144131;144132;144133;144134;144135;144136;144137;144138;144139;144140;144141;144142;144143;144144;144145;144146;144147;144148;144149;144150;144151;144152;144153;144154;144155;144156;144157;144158;144159;144160;144161;144162;144163;144164;144165;144166;144167;144168;144169;144170;144171;144172;144173;144174;144175;144176;144177;144178;144179;144180;144181;144182;144183;144184;144185;144186;144187;144188;144189;144190;144191;144192;144193;144194;144195;144196;144197;144198;144199;144200;144201;144202;144203;144204;144205;144206;144207;144208;144209;144210;144211;144212;144213;144214;144215;144216;144217;144218;144219;144220;144221;144222;144223;144224;144225;144226;144227;144228;144229;144230;144231;144232;144233;144234;144235;144236;144237;144238;144239;144240;144241;144242;144243;144244;144245;144246;144247;144248;144249;144250;144251;144252;144253;144254;144255;144256;144257;144258;144259;144260;144261;144262;144263;144264;144265;144266;144267;144268;144269;144270;144271;144272;144273;144274;144275;144276;144277;144278;144279;144280;144281;144282;144283;144284;144285;144286;144287;144288;144289;144290;144291;144292;144293;144294;144295;144296;144297;144298;144299;144300;144301;144302;144303;144304;144305;144306;144307;144308;144309;144310;144311;144312;144313;144314;144315	144215			186	
GALQNIIPASTGAAKAVGK	2	Unmodified	1766.005	0.0050323835	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		59.437	57.908	3	5.3284E-12	48440	160511_QHF_FH_JSI10i_3	114.34	79.723			0.28818	0.32753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28818	0.32753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165880000	123800000	42088000	0	0	0	165880000	123800000	42088000	0	0	0	0	0	0	17552	812	16628	106989;106990;106991	144316;144317;144318	144318			3	
GALQNIIPASTGAAKAVGK	2	Acetyl (K)	1808.0156	0.01559707	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	77.779	67.161	3	0.0069915	35863	160513_QHF_FH_JSI12Kac_4	53.779	42.992			0.61131	0.61436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61131	0.61436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6340800	4823300	1517500	0	0	0	1513100	1513100	0	3612800	2095300	1517500	1214900	1214900	0	17553	812	16628	106992;106993;106994	144319;144320;144321	144321	446;449		3	
GALQQGEAFQR	0	Unmodified	1203.5996	0.59963426	3969	Q96AQ6	PBXIP1	Pre-B-cell leukemia transcription factor-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.47		5					1			1	2	1	2	27.447	24.291	2	3.6781E-06	20470	160511_QHF_FH_JSI11i_2	109.44	41.458			1.141	0.96174	47.699	3	1	Median	1.141	0.96174	NaN	1	0	Median	0.46741	0.57138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.33	1.4813	NaN	1	1	Median	128150000	69390000	58760000	67350000	32286000	35064000	45204000	31760000	13444000	0	0	0	15596000	5343300	10252000	17554	3969	16629	106995;106996;106997;106998;106999;107000	144322;144323;144324;144325;144326;144327;144328;144329	144328			8	
GALQYLVPILTQTLTK	1	Unmodified	1758.0291	0.029121869	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.81	6.49			10						11	6	6	4	5	100.07	95.818	2;3	4.9332E-69	84899	160511_QHF_FH_JSI10i_3	203.11	183.87			0.91933	1.0545	9.2785	16	16	Linear	1.1631	0.89015	1.7967	4	4	Linear	0.80824	0.9342	9.075	4	4	Median	0.96724	0.91096	14.958	4	4	Median	0.90007	0.92657	8.9443	4	4	Median	21231000000	11577000000	9654100000	3064600000	1526800000	1537800000	5790700000	3310400000	2480300000	3368600000	1823400000	1545200000	9007200000	4916400000	4090800000	17555	2585	16630	107001;107002;107003;107004;107005;107006;107007;107008;107009;107010;107011;107012;107013;107014;107015;107016;107017;107018;107019;107020;107021	144330;144331;144332;144333;144334;144335;144336;144337;144338;144339;144340;144341;144342;144343;144344;144345;144346;144347;144348;144349;144350	144334			21	
GALTGGYYDTR	0	Unmodified	1172.5462	0.54620171	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	29.879	28.571	2	0.0012018	23999	160511_QHF_FH_JSI12i_2	70.028	50.757			0.90779	0.98341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90779	0.98341	NaN	1	1	Median	32673000	17445000	15229000	0	0	0	0	0	0	0	0	0	32673000	17445000	15229000	17556	5479	16631	107022;107023	144351;144352	144352			2	
GALTGGYYDTRK	1	Unmodified	1300.6412	0.64116473	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	22.054	21.211	2;3	8.112E-17	17363	160511_QHF_FH_JSI10i_3	138.24	115.35			1.0667	0.96115	9.7233	6	0	Median	1.227	0.98567	13.118	2	0	Median	0.79425	0.92516	3.6473	2	0	Median	1.1226	1.0521	11.041	2	0	Median	NaN	NaN	NaN	0	0	Median	722420000	332010000	390410000	204860000	104150000	100710000	233430000	126670000	106760000	284140000	101190000	182940000	0	0	0	17557	5479	16632	107024;107025;107026;107027;107028;107029;107030	144353;144354;144355;144356;144357;144358;144359;144360	144356			8	
GALTLSSPEVR	0	Unmodified	1128.6139	0.61388734	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8	6		3					3			1		2	3	48.265	42.474	2	9.658E-09	36480	160511_QHF_FH_JSI12i_2	116.3	80.424			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17558	5523	16633	107031;107032;107033;107034;107035;107036	144361;144362;144363;144364;144365;144366	144361			6	
GALTTQDENGQTK	1	Unmodified	1361.6423	0.64228694	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	10.451	10.068	2	3.1411E-10	7567	160511_QHF_FH_JSI9i_1	145.91	77.258			1.1702	1.1338	33.696	4	3	Median	1.0159	0.82057	NaN	1	0	Median	1.3602	1.618	NaN	1	1	Median	0.96174	0.89686	NaN	1	1	Median	1.348	1.4333	NaN	1	1	Median	193110000	86982000	106130000	49467000	26447000	23020000	43527000	18167000	25359000	50395000	22874000	27521000	49724000	19494000	30230000	17559	5415	16634	107037;107038;107039;107040;107041	144367;144368;144369;144370;144371	144371			5	
GALTTVEGLITR	0	Unmodified	1229.698	0.69795133	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	72.112	71.348	2	4.499E-05	63506	160511_QHF_FH_JSI11i_3	96.171	58.696			1.0741	1.0214	29.923	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84845	1.0244	36.013	2	0	Median	1.0741	1.0214	NaN	1	0	Median	0.79305	0.8196	41.144	2	1	Median	241460000	122120000	119340000	0	0	0	49766000	30529000	19238000	83421000	36555000	46865000	108270000	55035000	53234000	17560	498	16635	107042;107043;107044;107045;107046;107047	144372;144373;144374;144375;144376;144377;144378;144379	144373			7	
GALTVGITNTVGSSISR	0	Unmodified	1631.8842	0.88424855	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			65.178	63.678	2	6.904E-17	53402	160511_QHF_FH_JSI10i_3	126.76	111.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17561	2242	16636	107048;107049	144380;144381	144380			2	
GALVAINPGDRK	1	Unmodified	1209.683	0.68296996	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			31.451	30.063	2;3	1.663E-05	24966	160511_QHF_FH_JSI10i_3	82.362	66.472			1.2689	1.1449	11.791	5	2	Median	1.3812	1.1449	13.701	3	2	Median	1.0182	1.1502	13.427	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	463760000	223840000	239920000	275950000	128250000	147700000	187810000	95587000	92224000	0	0	0	0	0	0	17562	1742	16637	107050;107051;107052;107053;107054	144382;144383;144384;144385;144386;144387;144388;144389	144382			8	
GALVLGSSLK	1	Unmodified	943.57023	0.57023162	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.19		3	4					2		1	2	3	3	50.223	47.286	2	8.2391E-06	41471	160511_QHF_FH_JSI11i_3	106.42	66.155			0.98566	1.0668	83.775	9	6	Median	0.1865	0.15917	NaN	1	1	Median	1.0516	1.2901	7.5816	2	1	Median	1.1677	1.1001	93.833	3	2	Plateau	1.2864	1.3038	16.449	3	2	Plateau	1107200000	553340000	553860000	25296000	21554000	3741400	181970000	90134000	91837000	296320000	166010000	130310000	603610000	275640000	327970000	17563	1601	16638	107055;107056;107057;107058;107059;107060;107061;107062;107063	144390;144391;144392;144393;144394;144395;144396;144397	144390			8	
GALVLGYEGWLAGYQMNFETAK	1	Unmodified	2417.1726	0.172568	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.5	6.06		1							3	1	2		1	96.641	91.402	2;3	1.9084E-47	51143	160513_QHF_FH_JSI10Kac_6	244.44	208.79			1.0194	1.0156	43.989	4	2	Median	1.4936	1.2686	NaN	1	1	Median	0.69375	0.81281	0.051285	2	0	Median	NaN	NaN	NaN	0	0	Median	1.9333	2.0428	NaN	1	1	Median	323110000	149090000	174020000	76311000	22948000	53363000	193590000	112290000	81301000	0	0	0	53208000	13852000	39357000	17564	1195	16639	107064;107065;107066;107067	144398;144399;144400;144401	144401			4	
GALVLGYEGWLAGYQMNFETAK	1	Oxidation (M)	2433.1675	0.16748262	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	92.903	83.461	3	8.6215E-08	45157	160513_QHF_FH_JSI12Kac_6	79.635	73.075			0.99094	1.0514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99094	1.0514	NaN	1	0	Median	46486000	20184000	26302000	0	0	0	0	0	0	0	0	0	46486000	20184000	26302000	17565	1195	16639	107068	144402	144402		821	1	
GALVLIHGEVVHK	1	Unmodified	1370.8034	0.80341945	2926	Q5SRE7	PHYHD1	Phytanoyl-CoA dioxygenase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	50.713	41.22	3	0.00053647	21888	160513_QHF_FH_JSI9Kac_6	63.662	53.61			1.0646	1.0329	25.989	2	0	Median	1.0053	0.85948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1273	1.2412	NaN	1	0	Median	23406000	9753700	13653000	19066000	7706200	11360000	0	0	0	0	0	0	4339800	2047500	2292300	17566	2926	16640	107069;107070;107071	144403;144404;144405	144404			3	
GALVTVGQLSCYDQAK	1	Unmodified	1708.8454	0.8454202	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	64.101	63.055	2	3.4115E-07	54982	160511_QHF_FH_JSI11i_2	150.06	128.68			0.61966	0.60745	52.121	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61966	0.60745	NaN	1	1	Median	1.168	1.3169	37.971	2	2	Median	30014000	17689000	12325000	0	0	0	0	0	0	11315000	7564500	3750300	18699000	10125000	8574800	17567	5262	16641	107072;107073;107074	144406;144407;144408	144408			3	
GALVVVNDLGGDFK	1	Unmodified	1402.7456	0.7456298	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.56	4	5	3					1		3	3	4	3	77.459	75.921	2	2.7345E-30	69228	160511_QHF_FH_JSI10i_1	194.5	169.65			0.76136	0.71041	28.549	12	3	Median	0.66641	0.58682	13.573	3	0	Plateau	0.58639	0.70634	30.893	2	0	Median	0.69126	0.67733	42.714	4	2	Median	0.79221	0.87959	18.774	3	1	Median	951510000	569280000	382230000	179910000	106760000	73155000	217760000	136080000	81683000	241370000	148680000	92694000	312460000	177760000	134700000	17568	1747	16642	107075;107076;107077;107078;107079;107080;107081;107082;107083;107084;107085;107086;107087	144409;144410;144411;144412;144413;144414;144415;144416;144417;144418;144419;144420;144421;144422;144423;144424;144425;144426;144427;144428;144429;144430	144418			22	
GALWILGEYCSTK	1	Unmodified	1496.7334	0.73335055	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	1	2	84.723	80.553	2	1.659E-16	41117	160513_QHF_FH_JSI9Kac_6	139.86	124.89			1.4737	1.5062	92.182	6	3	Median	1.2423	1.0865	NaN	1	0	Median	3.1433	3.7769	156.49	2	1	Median	1.0036	0.92105	NaN	1	1	Median	1.9212	2.0075	14.147	2	1	Median	242660000	97722000	144940000	36002000	15071000	20931000	72575000	27233000	45342000	58097000	27128000	30969000	75986000	28290000	47696000	17569	1804	16643	107088;107089;107090;107091;107092;107093	144431;144432;144433;144434;144435;144436;144437;144438	144434			8	
GAMAATYSALNR	0	Unmodified	1224.5921	0.59210605	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.18		2	4					3	1	5	1	3	1	39.738	34.723	2	3.927E-08	18819	160513_QHF_FH_JSI11Kac_6	113.22	106.63			0.78585	0.79927	28.979	9	5	Median	0.73807	0.54912	16.242	5	4	Linear	0.74553	0.8458	NaN	1	0	Median	1.0487	1.03	15.461	3	1	Median	NaN	NaN	NaN	0	0	Median	198050000	111620000	86429000	165410000	98112000	67294000	1251400	832310	419060	31393000	12677000	18716000	0	0	0	17570	1755	16644	107094;107095;107096;107097;107098;107099;107100;107101;107102;107103	144439;144440;144441;144442;144443;144444;144445;144446;144447;144448;144449;144450;144451	144443			13	
GAMAATYSALNR	0	Oxidation (M)	1240.587	0.58702067	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				31.538	22.103	2	0.062499	12867	160513_QHF_FH_JSI9Kac_5	46.462	40.149			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17571	1755	16644	107104	144452	144452			1	
GAMAATYSALNSSK	1	Unmodified	1370.65	0.65001485	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	36.272	36.2	2	1.6467E-06	30763	160511_QHF_FH_JSI12i_3	132.32	120.73			0.79607	0.7673	7.7762	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85649	0.81067	NaN	1	1	Median	0.73992	0.72625	NaN	1	0	Median	56413000	29868000	26545000	0	0	0	0	0	0	25810000	10982000	14828000	30603000	18886000	11717000	17572	2669	16645	107105;107106;107107	144453;144454;144455;144456	144456			4	
GAMAATYSALNSSKPTPQLK	2	Unmodified	2035.0408	0.040825542	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			51.649	50.075	3	2.5035E-09	41025	160511_QHF_FH_JSI9i_3	111.66	103.16			0.578	0.52868	43.242	3	3	Plateau	0.57114	0.47242	NaN	1	1	Median	0.81194	0.95192	21.622	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58933000	35027000	23907000	21176000	13777000	7398700	37758000	21250000	16508000	0	0	0	0	0	0	17573	2669	16646	107108;107109;107110	144457;144458;144459	144459			3	
GAMAVIDGNVMAINPSEETK	1	Unmodified	2045.9762	0.97617638	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	75.412	74.818	2	6.2E-16	67990	160511_QHF_FH_JSI11i_1	157.75	144.07			0.65061	0.61397	15.912	3	3	Median	0.63328	0.54066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65061	0.61397	NaN	1	1	Median	0.72547	0.74175	NaN	1	1	Median	108990000	63790000	45203000	28299000	16477000	11822000	0	0	0	49318000	29715000	19603000	31377000	17598000	13778000	17574	485	16647	107111;107112;107113	144460;144461;144462	144460			3	
GAMGIMLVYDITNEK	1	Unmodified	1653.8106	0.8106146	1927;3909	P61006;Q92930	RAB8A;RAB8B	Ras-related protein Rab-8A;Ras-related protein Rab-8B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.18		1	9						5	4	3	5	3	96.102	92.784	2;3	3.0192E-32	43579	160513_QHF_FH_JSI12Kac_6	213.16	171.62			0.98062	0.96642	28.413	13	3	Median	1.6263	1.4439	47.61	3	1	Median	0.58977	0.69684	26.072	3	0	Median	1.0429	1.0068	9.0151	4	1	Median	0.92322	0.95586	5.3306	3	1	Median	498450000	264130000	234320000	28707000	14646000	14062000	87955000	50593000	37362000	172850000	86708000	86146000	208930000	112190000	96748000	17575	1927;3909	16648	107114;107115;107116;107117;107118;107119;107120;107121;107122;107123;107124;107125;107126;107127;107128	144463;144464;144465;144466;144467;144468;144469;144470;144471;144472;144473;144474;144475;144476;144477;144478;144479;144480;144481;144482;144483;144484;144485;144486	144485			24	
GAMGIMLVYDITNGK	1	Unmodified	1581.7895	0.78948522	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23			9						5	5	3	3	3	97.493	94.865	2;3	3.1054E-55	45739	160513_QHF_FH_JSI11Kac_6	234.72	208.78			0.78418	0.79879	27.821	13	9	Median	0.89311	0.75463	31.185	4	3	Median	0.38611	0.4537	34.453	3	3	Plateau	0.78418	0.75748	27.31	3	2	Plateau	0.82112	0.88426	16.206	3	1	Median	705640000	426130000	279500000	90074000	52083000	37991000	216780000	152930000	63853000	164410000	90506000	73907000	234370000	130620000	103750000	17576	1933	16649	107129;107130;107131;107132;107133;107134;107135;107136;107137;107138;107139;107140;107141;107142	144487;144488;144489;144490;144491;144492;144493;144494;144495;144496;144497;144498;144499;144500;144501	144491			15	
GAMIIYTSGTTGRPK	1	Oxidation (M)	1567.8028	0.8028271	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	34.775	25.531	3	0.00016589	14442	160513_QHF_FH_JSI10Kac_6	86.944	73.744			1.0853	1.1041	8.239	7	0	Median	1.2611	1.0806	3.4467	2	0	Median	0.8683	1.0399	8.4773	2	0	Median	1.0521	1.0218	12.192	2	0	Median	1.0853	1.191	NaN	1	0	Median	68594000	34244000	34350000	25611000	10128000	15482000	27109000	16292000	10817000	11489000	5729500	5759500	4385500	2093700	2291800	17577	2834	16650	107143;107144;107145;107146;107147;107148;107149	144502;144503;144504;144505;144506;144507;144508;144509;144510;144511;144512;144513	144512		2155	12	
GAMIIYTSGTTGRPK	1	Unmodified	1551.8079	0.80791248	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15.9	0.314								1	8	3	2	3	1	44.088	34.774	2;3	6.1156E-31	19199	160513_QHF_FH_JSI10Kac_6	166.93	132.04			1.0679	1.0072	22.529	8	1	Median	1.1897	1.0153	4.6593	3	0	Median	0.80956	0.94825	7.3979	2	0	Median	1.2969	1.3003	47.035	2	1	Median	1.0021	1.1119	NaN	1	0	Median	285540000	143910000	141640000	65935000	29899000	36036000	170570000	85215000	85360000	39055000	23246000	15809000	9979800	5549700	4430100	17578	2834	16650	107150;107151;107152;107153;107154;107155;107156;107157;107158	144514;144515;144516;144517;144518;144519;144520;144521;144522	144522			9	
GAMMSIAFK	1	Unmodified	954.46669	0.46669452	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			58.198	56.658	2	0.00072971	47333	160511_QHF_FH_JSI10i_3	75.213	47.688			1.0608	1.0527	10.464	2	0	Median	1.1632	0.97767	NaN	1	0	Median	0.96735	1.1336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61782000	25933000	35849000	34640000	12691000	21948000	27142000	13241000	13901000	0	0	0	0	0	0	17579	1430	16651	107159;107160	144523;144524	144523			2	
GAMSTQQIK	1	Oxidation (M)	978.48043	0.48043033	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	1	2	3	9.7455	9.3449	2	9.0907E-08	4027	160511_QHF_FH_JSI10i_1	141.93	104.37			1.0563	1.0208	41.879	8	0	Median	1.605	1.3167	61.133	2	0	Median	1.0808	1.2771	NaN	1	0	Median	1.0394	1.0208	3.5425	2	0	Median	0.92794	0.9666	61.983	3	0	Median	976410000	461920000	514490000	195100000	79132000	115970000	112790000	57769000	55018000	312100000	149090000	163020000	356410000	175930000	180480000	17580	1664	16652	107161;107162;107163;107164;107165;107166;107167;107168;107169	144525;144526;144527;144528;144529;144530;144531;144532;144533	144530		1347	9	
GAMSTQQIK	1	Unmodified	962.48552	0.48551571	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.7	4	4	2			3	3			3	5	4	4	15.232	11.953	2	1.3002E-23	8212	160513_QHF_FH_JSI11Kac_4	178.08	145.61			0.89686	0.87785	14.782	16	2	Median	0.96241	0.79603	1.3047	3	1	Median	0.84173	0.98443	19.21	5	1	Median	1.0053	0.9892	14.543	4	0	Median	0.80871	0.87774	8.4834	4	0	Median	3358200000	1837400000	1520900000	669430000	320570000	348860000	977790000	550990000	426800000	752730000	476020000	276710000	958300000	489770000	468530000	17581	1664	16652	107170;107171;107172;107173;107174;107175;107176;107177;107178;107179;107180;107181;107182;107183;107184;107185	144534;144535;144536;144537;144538;144539;144540;144541;144542;144543;144544;144545;144546;144547;144548;144549;144550;144551;144552;144553;144554	144545			21	
GANAVGYTNYPDNVVFK	1	Unmodified	1827.8792	0.87916317	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	64.261	63.636	2	6.7997E-22	57741	160511_QHF_FH_JSI11i_1	215.53	191.19			0.92475	0.97527	3.9828	4	0	Linear	1.0611	0.88496	NaN	1	0	Median	0.8097	0.94392	NaN	1	0	Median	0.99774	0.96673	NaN	1	0	Median	0.85709	0.9057	NaN	1	0	Median	940560000	510560000	430000000	205020000	99866000	105150000	239900000	132820000	107090000	284370000	156440000	127930000	211260000	121440000	89823000	17582	1002	16653	107186;107187;107188;107189;107190	144555;144556;144557;144558;144559;144560;144561	144556			7	
GANDFMCDEMER	0	Unmodified	1473.5323	0.53228426	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.202	44.531	2	6.5693E-16	40094	160511_QHF_FH_JSI10i_1	160.67	160.67			1.1683	1.2215	17.791	4	0	Median	1.5082	1.2572	NaN	1	0	Median	0.98238	1.1868	NaN	1	0	Median	0.98551	0.95526	NaN	1	0	Median	1.385	1.4681	NaN	1	0	Median	897410000	412510000	484910000	143590000	55228000	88359000	270810000	145860000	124950000	274670000	137350000	137330000	208340000	74075000	134270000	17583	1132	16654	107191;107192;107193;107194	144562;144563	144563			2	
GANFLTQILLRPGASDLTGSFR	0	Unmodified	2333.2492	0.24917883	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			91.451	84.202	3	1.5417E-16	48666	160513_QHF_FH_JSI10Kac_6	124.86	99.538			0.8112	0.81422	29.383	2	0	Median	0.78583	0.66146	NaN	1	0	Median	0.83739	1.0022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198040000	85644000	112400000	58062000	22179000	35883000	139980000	63465000	76514000	0	0	0	0	0	0	17584	445	16655	107195;107196	144564;144565	144565			2	
GANIQLLDLPGIIEGAAQGK	1	Unmodified	1977.0895	0.089490294	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	101.92	101.87	2;3	1.203E-10	88653	160511_QHF_FH_JSI12i_3	124.62	112.06			0.8758	0.86261	13.569	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86934	0.84174	3.4633	2	1	Median	0.90593	0.89139	19.027	3	2	Median	793080000	443160000	349920000	0	0	0	0	0	0	213710000	117630000	96072000	579370000	325530000	253850000	17585	1843	16656	107197;107198;107199;107200;107201	144566;144567;144568;144569	144569			4	
GANLEEVNDEGYTPLMEAAR	0	Unmodified	2177.9899	0.98991218	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	71.218	70.685	2	1.6158E-99	63998	160511_QHF_FH_JSI10i_1	234.67	220.41			1.0839	1.1674	20.942	4	1	Median	1.8944	1.5586	NaN	1	0	Median	1.0564	1.1981	NaN	1	1	Median	0.97702	0.93786	NaN	1	0	Median	1.1122	1.1375	NaN	1	0	Median	110720000	57179000	53544000	22159000	7384900	14774000	23577000	11753000	11825000	32044000	18957000	13086000	32943000	19084000	13858000	17586	3434	16657	107202;107203;107204;107205;107206	144570;144571;144572;144573;144574;144575;144576;144577;144578	144576			9	
GANLKDYYSR	1	Acetyl (K)	1227.5884	0.58840088	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	49.232	38.809	2	8.2077E-05	22865	160513_QHF_FH_JSI11Kac_4	101.38	86.712			0.9112	0.95929	46.724	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0145	1.2094	NaN	1	1	Median	0.4971	0.49178	NaN	1	1	Median	0.9112	0.95929	NaN	1	1	Median	15937000	9085400	6851500	0	0	0	4222500	2005000	2217400	8867200	5659900	3207300	2847200	1420500	1426700	17587	2265	16658	107207;107208;107209	144579;144580;144581	144580	2361		3	
GANNQIK	1	Unmodified	743.3926	0.3926016	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	1.776	1.4756	2	0.020338	799	160511_QHF_FH_JSI12i_1	57.102	39.541			1.0154	0.97797	8.6755	4	0	Linear	1.4043	1.1316	NaN	1	0	Median	0.91303	1.0411	NaN	1	0	Median	0.98199	0.93852	NaN	1	0	Median	1.0499	1.1221	NaN	1	0	Median	90549000	43328000	47221000	12506000	5572900	6933400	25626000	13299000	12327000	29723000	13442000	16281000	22694000	11015000	11679000	17588	1347	16659	107210;107211;107212;107213	144582	144582			1	
GANPVEIR	0	Unmodified	854.46102	0.46101552	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.83	4	4	3				3	2		3	5	4	4	22.245	19.027	2	0.00013168	12295	160513_QHF_FH_JSI11Kac_4	122.74	79.828			1.02	1.0301	13.976	16	5	Median	1.1383	0.96647	13.39	3	1	Median	0.7892	0.96543	19.242	5	1	Median	1.045	1.0381	4.6715	4	1	Median	1.0431	1.0846	8.6909	4	2	Median	11527000000	5567700000	5958900000	2518500000	1159700000	1358800000	3035000000	1486100000	1548900000	2956700000	1503300000	1453500000	3016400000	1418600000	1597800000	17589	980	16660	107214;107215;107216;107217;107218;107219;107220;107221;107222;107223;107224;107225;107226;107227;107228;107229	144583;144584;144585;144586;144587;144588;144589;144590;144591;144592;144593;144594;144595;144596;144597;144598;144599;144600;144601	144590			19	
GANPVEIRR	0	Unmodified	1010.5621	0.56212655	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.62	1	6	6					5	7	7	8	6	4	16.742	12.735	2;3	1.9034E-16	10556	160511_QHF_FH_JSI9i_3	176.6	132.16			1.0511	0.96257	13.678	24	0	Plateau	1.2909	1.0429	9.7445	7	0	Median	0.83378	0.97811	14.226	8	0	Median	0.96247	0.9237	13.71	5	0	Median	1.1301	1.218	15.341	4	0	Median	9609100000	4610600000	4998500000	4865500000	2059700000	2805800000	3947100000	2146100000	1801000000	547820000	263570000	284250000	248630000	141270000	107360000	17590	980	16661	107230;107231;107232;107233;107234;107235;107236;107237;107238;107239;107240;107241;107242;107243;107244;107245;107246;107247;107248;107249;107250;107251;107252;107253;107254	144602;144603;144604;144605;144606;144607;144608;144609;144610;144611;144612;144613;144614;144615;144616;144617;144618;144619;144620;144621;144622;144623;144624;144625;144626;144627;144628;144629;144630;144631;144632;144633;144634;144635	144612			34	
GANQWIK	1	Unmodified	815.42899	0.42898711	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.31		3	4				1	3	2	2	5	3	3	27.642	21.985	2	1.7337E-06	18069	160511_QHF_FH_JSI12i_3	129.96	75.436			0.9733	1.0048	13.882	10	1	Median	1.1762	1.0325	NaN	1	0	Median	0.76805	0.95754	9.5616	4	0	Linear	0.98116	0.97112	24.085	3	1	Median	0.87746	0.96654	1.6586	2	0	Median	597060000	297120000	299940000	126450000	53890000	72560000	126810000	76201000	50611000	329500000	159040000	170460000	14295000	7982600	6312200	17591	903	16662	107255;107256;107257;107258;107259;107260;107261;107262;107263;107264;107265;107266;107267	144636;144637;144638;144639;144640;144641;144642;144643;144644;144645;144646;144647;144648;144649;144650	144648			15	
GANRTETVTSFR	0	Unmodified	1337.6688	0.66877646	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.17	6.52		1	2					1	2	3	3			21.432	16.922	3	4.7514E-05	14360	160511_QHF_FH_JSI10i_2	71.558	62.514			0.96064	0.94285	37.013	6	0	Median	1.2447	1.4255	19.332	3	0	Plateau	0.53801	0.64385	18.84	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165990000	87902000	78088000	94399000	47463000	46936000	71591000	40439000	31152000	0	0	0	0	0	0	17592	2094	16663	107268;107269;107270;107271;107272;107273	144651;144652;144653;144654;144655;144656	144654			5	
GANTHLSTFSFTK	1	Unmodified	1409.6939	0.69392858	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	4	3	5	4	46.633	43.219	2;3	8.9638E-08	35453	160511_QHF_FH_JSI9i_3	140.14	122.71			0.98489	1.0995	9.5155	13	2	Median	1.3601	1.0995	3.2495	3	0	Median	0.98489	1.108	6.6478	3	0	Plateau	1.2099	1.1731	13.057	3	0	Plateau	0.91499	0.9702	12.619	4	2	Median	2593100000	1177500000	1415600000	574240000	250690000	323550000	543880000	255370000	288510000	618500000	256010000	362490000	856510000	415430000	441080000	17593	6	16664	107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286;107287;107288;107289	144657;144658;144659;144660;144661;144662;144663;144664;144665;144666;144667;144668;144669;144670;144671;144672;144673;144674;144675;144676;144677;144678;144679;144680;144681	144670			25	
GAPAAATAPAPTAHK	1	Unmodified	1330.6993	0.69934831	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.08	8	8	5				3			4	5	8	7	15.31	13.976	2;3	3.8253E-10	11423	160511_QHF_FH_JSI10i_1	151.79	140.96			0.96822	0.98766	15.649	24	1	Median	1.1472	0.96738	9.5311	4	0	Median	0.86915	1.0296	9.4261	5	0	Median	0.96822	0.9647	15.045	8	0	Median	0.98486	0.99289	22.409	7	1	Median	3979100000	1936900000	2042100000	676310000	276590000	399720000	935930000	465230000	470690000	1178300000	586990000	591330000	1188500000	608120000	580400000	17594	3834	16665	107290;107291;107292;107293;107294;107295;107296;107297;107298;107299;107300;107301;107302;107303;107304;107305;107306;107307;107308;107309;107310;107311;107312;107313	144682;144683;144684;144685;144686;144687;144688;144689;144690;144691;144692;144693;144694;144695;144696;144697;144698;144699;144700;144701;144702;144703;144704;144705;144706;144707;144708;144709;144710;144711;144712;144713;144714;144715;144716;144717;144718;144719;144720;144721;144722	144699			41	
GAPAAATAPAPTAHKAK	2	Acetyl (K)	1571.842	0.8419898	3834	Q92522	H1FX	Histone H1x	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		28.047	20.039	2	0.0086922	12623	160513_QHF_FH_JSI11Kac_4	66.262	57.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1823000	0	1823000	0	0	0	0	0	0	1823000	0	1823000	0	0	0	17595	3834	16666	107314	144723	144723	2955		1	
GAPAAEPGK	1	Unmodified	796.40792	0.40791731	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.2201	6.8843	2	0.00040657	4519	160511_QHF_FH_JSI9i_1	81.296	67.139			0.9243	1.0246	16.295	4	0	Median	0.91306	0.76357	NaN	1	0	Median	0.8848	1.0486	NaN	1	0	Median	1.1238	1.0979	NaN	1	0	Median	0.93568	1.0012	NaN	1	0	Median	1504600000	797640000	706930000	339960000	168490000	171470000	409640000	243370000	166280000	388470000	190790000	197670000	366510000	194990000	171520000	17596	3203	16667	107315;107316;107317;107318	144724;144725;144726;144727;144728;144729;144730	144729			7	
GAPAAEPGKR	1	Unmodified	952.50903	0.50902834	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			5.5967	5.1678	2	0.014087	3254	160511_QHF_FH_JSI10i_2	60.91	37.482			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6296500	6296500	0	0	0	0	6296500	6296500	0	0	0	0	0	0	0	17597	3203	16668	107319	144731	144731			1	
GAPALQLPK	1	Unmodified	893.53345	0.53345218	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		45.089	44.696	2	0.0064476	40412	160511_QHF_FH_JSI11i_1	55.676	32.657			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17598	2134	16669	107320	144732	144732			1	
GAPAPHCEMSR	0	Unmodified	1211.5176	0.51756089	299	O15533	TAPBP	Tapasin	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	9.0448	9.0935	3	0.0092603	6516	160511_QHF_FH_JSI12i_3	37.94	32.22			1.1986	1.1578	40.35	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9318	0.87044	NaN	1	0	Median	1.5417	1.5402	NaN	1	0	Median	107920000	54516000	53405000	0	0	0	0	0	0	53742000	30817000	22924000	54180000	23699000	30481000	17599	299	16670	107321;107322	144733	144733			1	
GAPEGVIDR	0	Unmodified	912.46649	0.46649483	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.68	4	2				2	1			1	3	4	1	22.591	19.631	2	0.0011621	17100	160511_QHF_FH_JSI12i_1	70.256	46.827			0.89864	0.94391	13.37	9	0	Median	1.161	0.93988	NaN	1	0	Median	0.8008	0.94391	15.687	3	0	Median	0.96214	0.93124	16.773	4	0	Median	0.89864	0.96542	NaN	1	0	Median	2200800000	1108900000	1091900000	406020000	179850000	226170000	517200000	276050000	241150000	896820000	458280000	438540000	380770000	194700000	186070000	17600	1103	16671	107323;107324;107325;107326;107327;107328;107329;107330;107331	144734;144735;144736;144737;144738;144739	144734			5	
GAPEPGTQDASIPVEK	1	Unmodified	1594.7839	0.7838658	5102	Q9NXA8	SIRT5	NAD-dependent protein deacylase sirtuin-5, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	40.1	39.657	2	1.4918E-27	35449	160511_QHF_FH_JSI10i_1	145.31	112.09			0.97948	1.007	3.8922	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78308	0.94429	NaN	1	1	Median	1.0378	0.98825	NaN	1	0	Median	0.97948	1.0203	NaN	1	0	Median	214640000	117790000	96854000	0	0	0	67008000	45289000	21719000	72458000	37505000	34953000	75174000	34992000	40182000	17601	5102	16672	107332;107333;107334;107335	144740;144741;144742	144742			3	
GAPGQPGTILR	0	Unmodified	1065.5931	0.59309232	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	30.57	29.964	2	0.0002094	25232	160511_QHF_FH_JSI12i_3	80.688	61.594			0.91444	0.92256	8.7925	4	1	Median	1.084	0.92467	NaN	1	0	Median	0.74096	0.92045	NaN	1	1	Median	0.84406	0.84713	NaN	1	0	Median	0.99069	1.0484	NaN	1	0	Median	328110000	173990000	154120000	89481000	43145000	46336000	60172000	35301000	24871000	129940000	70880000	59058000	48516000	24660000	23856000	17602	1743	16673	107336;107337;107338;107339;107340	144743;144744;144745;144746	144746			3	
GAPGVSVDMNITYMSPAK	1	Unmodified	1836.875	0.87500577	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	74.054	73.554	2	6.2826E-09	66587	160511_QHF_FH_JSI10i_1	176.87	168.14			0.66202	0.87131	16.632	4	2	Linear	1.1481	0.95832	NaN	1	1	Median	0.62007	0.72406	NaN	1	0	Median	1.0577	1.0379	NaN	1	1	Median	0.74879	0.7922	NaN	1	0	Median	170900000	93432000	77466000	23594000	11234000	12361000	56963000	32758000	24205000	41242000	20527000	20715000	49098000	28913000	20185000	17603	4905	16674	107341;107342;107343;107344;107345	144747;144748;144749;144750;144751;144752;144753;144754;144755	144752			9	
GAPHSSPAR	0	Unmodified	878.43586	0.4358634	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		3.3709	3.1324	2;3	0.003304	1951	160511_QHF_FH_JSI10i_3	60.91	36.938			0.82022	0.83614	22.254	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63762	0.7144	NaN	1	0	Median	1.0551	0.97863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49150000	28517000	20633000	0	0	0	21489000	14003000	7485500	27662000	14514000	13148000	0	0	0	17604	3411	16675	107346;107347	144756;144757;144758	144757			3	
GAPLVKPLPVNPTDPAVTGPDIFAK	2	Unmodified	2513.3894	0.38936071	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	90.05	89.962	3	0.027199	78054	160511_QHF_FH_JSI12i_3	29.198	21.301			0.088371	0.087711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.088371	0.087711	NaN	1	1	Median	153490000	143120000	10373000	0	0	0	0	0	0	0	0	0	153490000	143120000	10373000	17605	4703	16676	107348	144759	144759			1	
GAPMPPAATPPSPK	1	Oxidation (M)	1333.67	0.67002202	87	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	98.165	97.983	2	0.022634	88793	160511_QHF_FH_JSI12i_1	43.308	26.835			0.90195	0.9472	7.5478	4	0	Median	1.2807	1.0697	NaN	1	0	Median	0.78076	0.93767	NaN	1	0	Median	0.91109	0.89537	NaN	1	0	Median	0.89289	0.95682	NaN	1	0	Median	431840000	228000000	203850000	78200000	33460000	44740000	127060000	76694000	50364000	119200000	59458000	59738000	107380000	58382000	49003000	17606	87	16677	107349;107350;107351;107352	144760	144760			1	
GAPNADLIFK	1	Unmodified	1044.5604	0.56039521	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		55.479	55.075	2	0.0015262	49664	160511_QHF_FH_JSI10i_1	76.827	67.613			0.10177	0.10962	17.074	2	2	Median	NaN	NaN	NaN	0	0	Median	0.10392	0.12369	NaN	1	1	Median	0.099654	0.097153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	388540000	352550000	35996000	0	0	0	181210000	167060000	14148000	207340000	185490000	21848000	0	0	0	17607	4829	16678	107353;107354	144761;144762	144762			2	
GAPNNSCSEIK	1	Unmodified	1175.5241	0.52408606	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		10.038	9.9106	2	0.00077214	7572	160511_QHF_FH_JSI11i_1	80.755	68.128			0.18474	0.17936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18474	0.17936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15547000	10789000	4758100	0	0	0	0	0	0	15547000	10789000	4758100	0	0	0	17608	2227	16679	107355	144763	144763			1	
GAPPLQVQWFR	0	Unmodified	1297.6931	0.69314072	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	77.306	76.639	2	4.1099E-06	68356	160511_QHF_FH_JSI11i_3	116.37	106.34			0.76271	0.81703	10.342	5	1	Median	0.97515	0.81703	NaN	1	0	Median	0.73465	0.87981	NaN	1	0	Median	0.75998	0.73492	13.263	2	1	Median	0.76271	0.83006	NaN	1	0	Median	366980000	200750000	166220000	64360000	29704000	34656000	64676000	35174000	29502000	200230000	116890000	83346000	37709000	18988000	18721000	17609	3805	16680	107356;107357;107358;107359;107360	144764;144765;144766;144767;144768	144764			5	
GAPPSSNIEDFHGLLPK	1	Unmodified	1777.8999	0.89989861	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	4.21	3	4	1					1		1	2	3	3	68.219	66.451	3	6.8255E-07	57539	160511_QHF_FH_JSI12i_2	117.4	105.71			0.8265	0.82807	17.302	9	3	Median	0.90156	0.78355	NaN	1	0	Median	0.58349	0.69788	24.191	2	0	Median	0.86225	0.84345	18.657	3	1	Median	0.8265	0.93071	13.01	3	2	Median	2430800000	1236200000	1194600000	280790000	141610000	139170000	527730000	322360000	205370000	837480000	393600000	443880000	784820000	378640000	406180000	17610	1556	16681	107361;107362;107363;107364;107365;107366;107367;107368;107369	144769;144770;144771;144772;144773;144774;144775;144776;144777;144778;144779;144780;144781;144782;144783	144772			15	
GAPQHYPK	1	Unmodified	896.45045	0.45045083	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.33	6.49		1	6						5	4	1	4	3	6.7246	3.6307	2;3	0.00052682	3582	160511_QHF_FH_JSI12i_3	75.109	56.67			1.1337	1.1338	32.86	11	3	Median	1.5273	1.2467	18.222	3	1	Plateau	1.2236	1.4182	NaN	1	0	Median	1.0393	1.0107	51.463	4	1	Median	1.1337	1.1338	26.878	3	1	Median	2313600000	1028200000	1285400000	108130000	33193000	74932000	61705000	26986000	34720000	1044200000	469170000	575050000	1099600000	498820000	600730000	17611	2084	16682	107370;107371;107372;107373;107374;107375;107376;107377;107378;107379;107380;107381	144784;144785;144786;144787;144788;144789;144790;144791;144792;144793;144794	144791			11	
GAPTTSLISVAVTK	1	Unmodified	1343.766	0.76603089	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6.19	5	6			1	1	3	3		3	7	5	4	68.309	63.825	2;3	8.7813E-07	33879	160513_QHF_FH_JSI10Kac_4	106.49	85.622			1.0026	1.0451	27.157	18	4	Median	1.3022	1.1404	43.243	3	1	Median	0.8416	0.99452	7.4145	6	1	Median	1.0906	1.0651	12.632	5	1	Median	1.0237	1.0943	40.235	4	1	Median	958970000	466330000	492640000	143650000	52598000	91049000	255350000	143140000	112200000	307330000	145960000	161370000	252650000	124630000	128020000	17612	1659	16683	107382;107383;107384;107385;107386;107387;107388;107389;107390;107391;107392;107393;107394;107395;107396;107397;107398;107399;107400	144795;144796;144797;144798;144799;144800;144801;144802;144803;144804;144805;144806;144807;144808;144809;144810;144811;144812;144813;144814;144815;144816;144817;144818;144819;144820;144821	144803			27	
GAPVGGHILSYLLEK	1	Unmodified	1552.8613	0.86132826	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			13							3	6	3	1	84.224	83.386	2;3	6.7834E-21	73642	160511_QHF_FH_JSI11i_3	130.56	106.27			0.93493	0.89665	33.659	9	1	Median	1.1462	0.92929	1.9272	2	0	Median	0.90857	1.0849	50.288	4	1	Median	0.91547	0.86379	5.2808	2	0	Median	0.68695	0.71221	NaN	1	0	Median	594960000	306020000	288940000	108710000	45310000	63399000	119170000	64268000	54906000	328210000	170140000	158070000	38867000	26302000	12565000	17613	100	16684	107401;107402;107403;107404;107405;107406;107407;107408;107409;107410;107411;107412;107413	144822;144823;144824;144825;144826;144827;144828;144829;144830;144831;144832;144833;144834;144835;144836;144837;144838;144839	144826			18	
GAPVIVPELGKPR	1	Acetyl (K)	1373.8031	0.8030851	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						2	6				3	2	3	76.938	66.867	2;3	2.4301E-05	35183	160513_QHF_FH_JSI10Kac_4	100.48	88.987			0.92707	1.049	14.351	7	1	Median	NaN	NaN	NaN	0	0	Median	0.80491	0.98055	7.3353	3	0	Plateau	1.3096	1.2959	16.309	2	1	Median	0.98594	1.0774	7.7631	2	0	Median	48531000	25360000	23171000	0	0	0	18625000	10492000	8133400	10982000	4740400	6241600	18924000	10127000	8796400	17614	5698	16685	107414;107415;107416;107417;107418;107419;107420;107421	144840;144841;144842;144843;144844;144845;144846;144847;144848	144841	3529		9	
GAPYNALTGK	1	Unmodified	990.51345	0.51344502	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	29.573	28.819	2	2.6798E-07	25878	160511_QHF_FH_JSI12i_1	113.66	82.99			0.84383	0.89218	19.985	8	1	Median	0.84911	0.73742	33.569	2	0	Median	0.67787	0.82068	30.403	2	0	Median	0.82239	0.82158	5.0338	2	0	Median	0.92339	0.96177	1.0034	2	1	Median	771680000	427590000	344090000	144530000	75602000	68930000	234250000	135230000	99020000	193320000	102220000	91095000	199580000	114540000	85044000	17615	5428	16686	107422;107423;107424;107425;107426;107427;107428;107429	144849;144850;144851;144852;144853;144854;144855;144856;144857;144858	144851			10	
GAQAAIVVYDITNEESFAR	0	Unmodified	2053.0116	0.011633904	1174	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	87.247	86.595	3	4.0185E-09	74746	160511_QHF_FH_JSI12i_2	110.37	101.18			0.8406	0.77985	26.806	4	2	Median	0.89856	0.78054	NaN	1	1	Median	1.0733	1.2913	NaN	1	0	Median	0.78639	0.77916	NaN	1	0	Median	0.67932	0.72016	NaN	1	1	Median	98028000	59038000	38989000	13709000	8726700	4982100	25947000	12526000	13421000	41116000	27723000	13393000	17256000	10062000	7193700	17616	1174	16687	107430;107431;107432;107433	144859;144860;144861;144862;144863;144864	144859			6	
GAQAAIVVYDITNTDTFAR	0	Unmodified	2025.0167	0.016719282	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	3	1	3	87.942	87.376	2;3	3.4024E-18	75419	160511_QHF_FH_JSI12i_2	196.93	184.16			0.93713	1.0366	13.94	8	3	Median	1.2769	1.0967	11.213	2	1	Median	0.71103	0.93713	14.811	3	2	Plateau	1.1179	1.1093	NaN	1	0	Median	0.93713	1.0439	10.361	2	0	Median	380530000	194400000	186130000	99859000	40868000	58991000	102650000	59541000	43107000	32773000	16094000	16678000	145250000	77897000	67353000	17617	1727	16688	107434;107435;107436;107437;107438;107439;107440;107441;107442	144865;144866;144867;144868;144869;144870;144871;144872;144873;144874;144875	144866			11	
GAQAASPAK	1	Unmodified	799.41882	0.41881635	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	1	2	5.0333	0.48605	2	7.6351E-05	2460	160511_QHF_FH_JSI12i_1	114.28	49.029			0.94317	1.0086	28.127	5	3	Median	0.69658	0.58192	NaN	1	1	Median	0.78189	0.92758	NaN	1	0	Median	1.2327	1.2159	NaN	1	0	Median	0.96781	1.0361	3.8101	2	2	Median	580620000	369970000	210650000	206090000	125770000	80322000	2807300	1484000	1323300	8053900	4283300	3770600	363670000	238430000	125240000	17618	1133	16689	107443;107444;107445;107446;107447	144876;144877;144878;144879	144876			4	
GAQAIIIVFNLNDVASLEHTK	1	Unmodified	2252.2165	0.21648172	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.664	85.944	3	0.0011485	49094	160513_QHF_FH_JSI10Kac_6	70.959	56.65			0.68937	0.82283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68937	0.82283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73409000	44315000	29094000	0	0	0	73409000	44315000	29094000	0	0	0	0	0	0	17619	4562	16690	107448	144880	144880			1	
GAQATLSSTTK	1	Unmodified	1063.551	0.55095274	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	12.272	9.5505	2	2.537E-10	6419	160513_QHF_FH_JSI11Kac_3	121.73	106.96			1.0903	1.178	11.747	6	2	Median	1.2505	1.0138	NaN	1	0	Median	1.0582	1.2382	3.0709	2	1	Median	1.0878	1.0539	17.003	2	1	Median	1.1122	1.1676	NaN	1	0	Median	639940000	281960000	357980000	181440000	83329000	98108000	167420000	83516000	83909000	167890000	64587000	103310000	123190000	50532000	72656000	17620	2344	16691	107449;107450;107451;107452;107453;107454	144881;144882;144883;144884;144885	144883			5	
GAQEIISK	1	Unmodified	844.46543	0.46543219	5308	Q9UHP6	RSPH14	Radial spoke head 14 homolog	yes	yes	0	0	0	0		By MS/MS	By matching		8.33	5.19	1				2						2	1		73.305	64.725	2	0.0070671	58152	160511_QHF_FH_JSI10i_1	58.917	7.9513			0.80392	0.87016	14.972	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82102	0.96734	NaN	1	0	Median	0.78718	0.78275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3139300	1783900	1355400	0	0	0	2506900	1427500	1079500	632350	356470	275870	0	0	0	17621	5308	16692	107455;107456;107457	144886;144887	144886			2	
GAQEVGER	0	Unmodified	844.40389	0.40389457	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.1725	4.9334	2	0.0028151	2876	160511_QHF_FH_JSI12i_1	75.738	15.056			0.79674	0.92869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79674	0.92869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196510000	115060000	81442000	0	0	0	196510000	115060000	81442000	0	0	0	0	0	0	17622	2636	16693	107458;107459	144888;144889	144888			2	
GAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTR	0	Unmodified	3268.5821	0.5820933	756	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.405	42.805	4	3.1956E-16	34989	160511_QHF_FH_JSI9i_3	78.909	73.904			1.7226	1.4217	NaN	1	1	Median	1.7226	1.4217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32904000	10093000	22811000	32904000	10093000	22811000	0	0	0	0	0	0	0	0	0	17623	756	16694	107460	144890	144890			1	
GAQGVILVYDVTR	0	Unmodified	1389.7616	0.76161421	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	76.817	66.288	2	5.3967E-12	35275	160513_QHF_FH_JSI11Kac_5	121.08	101.83			0.70328	0.9061	13.44	4	0	Linear	1.0716	0.8914	NaN	1	0	Median	0.85909	1.021	NaN	1	0	Median	0.75432	0.73974	NaN	1	0	Median	0.85224	0.92105	NaN	1	0	Median	20137000	10941000	9196000	3074400	1491400	1583000	3647000	1730600	1916400	9613000	5565000	4048000	3802600	2154000	1648500	17624	4884	16695	107461;107462;107463;107464	144891;144892;144893;144894;144895;144896;144897;144898	144894			8	
GAQGVILVYDVTRR	0	Unmodified	1545.8627	0.86272524	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	5.16			2					1	7	2	4	1	3	78.586	70.62	2;3	7.5012E-08	32930	160513_QHF_FH_JSI10Kac_6	113.53	94.796			1.2403	1.2603	140.5	6	2	Median	1.5773	1.3421	NaN	1	0	Median	0.81771	0.95292	1.3871	2	0	Median	1.3781	1.3533	NaN	1	0	Median	6.1094	6.4311	239.39	2	2	Median	383910000	158650000	225260000	44023000	19982000	24041000	187910000	105300000	82614000	43143000	19274000	23869000	108830000	14101000	94734000	17625	4884	16696	107465;107466;107467;107468;107469;107470;107471;107472;107473;107474	144899;144900;144901;144902;144903;144904;144905;144906;144907;144908;144909	144908			11	
GAQQIHSIR	0	Unmodified	1008.5465	0.54647648	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		16.493	16.082	3	0.0034732	6843	160511_QHF_FH_JSI10i_3	45.022	3.574			0.94437	0.91668	15.922	2	0	Median	1.2452	1.0259	NaN	1	0	Median	0.71622	0.81907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79547000	38378000	41169000	41955000	16509000	25446000	35433000	21869000	13564000	2159300	0	2159300	0	0	0	17626	3386	16697	107475;107476;107477	144910;144911	144911			2	
GAQVEEIWSLEPENFEK	1	Unmodified	2003.9476	0.94763666	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	89.097	88.663	2;3	1.6204E-15	80426	160511_QHF_FH_JSI10i_1	154.47	142.49			1.0398	1.1024	31.712	4	3	Median	1.9694	1.6132	NaN	1	1	Median	0.83231	0.96279	NaN	1	0	Median	1.2991	1.2622	NaN	1	1	Median	0.77999	0.77924	NaN	1	1	Median	82690000	42571000	40120000	9923900	2745100	7178800	38947000	23294000	15652000	17183000	7003100	10179000	16637000	9528200	7109200	17627	5663	16698	107478;107479;107480;107481;107482;107483;107484	144912;144913;144914;144915;144916;144917;144918	144917			6	
GAQVNAVNQNGCTPLHYAASK	1	Unmodified	2199.0491	0.049098818	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	39.032	38.484	3	6.072E-18	33797	160511_QHF_FH_JSI10i_2	141.6	132.19			0.69768	0.69543	41.377	4	1	Linear	1.7032	1.5091	NaN	1	1	Median	0.99537	1.2187	NaN	1	0	Median	0.63475	0.58024	NaN	1	0	Median	0.88938	0.90899	NaN	1	0	Median	222180000	117160000	105020000	16056000	3983700	12072000	45207000	21773000	23435000	92616000	58798000	33818000	68297000	32604000	35693000	17628	573	16699	107485;107486;107487;107488	144919;144920;144921;144922;144923;144924;144925;144926	144925			8	
GAQWYLIDSR	0	Unmodified	1207.5986	0.59857163	2350	Q13107	USP4	Ubiquitin carboxyl-terminal hydrolase 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			68.45	60.689	2	0.0011242	33329	160513_QHF_FH_JSI10Kac_6	87.298	54.883			0.88926	1.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88926	1.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12626000	8128600	4497300	0	0	0	12626000	8128600	4497300	0	0	0	0	0	0	17629	2350	16700	107489	144927	144927			1	
GAQYQPILR	0	Unmodified	1044.5716	0.5716286	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.75	0.433	1	3								1	2	1		33.146	32.463	2	0.013688	27487	160511_QHF_FH_JSI11i_2	92.187	79.15			1.0102	1.131	31.939	4	0	Median	1.4095	1.2151	NaN	1	0	Median	0.69829	0.82012	40.651	2	0	Median	1.1368	1.17	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	179030000	92921000	86110000	43274000	19101000	24173000	77642000	46680000	30962000	58115000	27140000	30975000	0	0	0	17630	1273	16701	107490;107491;107492;107493	144928;144929	144929			0	
GASAYFLFLR	0	Unmodified	1143.6077	0.60767975	304	O43157	PLXNB1	Plexin-B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	84.584	76.456	2	4.6203E-06	43270	160513_QHF_FH_JSI10Kac_6	116.05	84.013			1.0135	1.1393	63.447	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83781	0.99563	NaN	1	0	Median	2.5264	2.4926	NaN	1	0	Median	3.0858	3.3651	NaN	1	0	Median	81506000	35938000	45568000	0	0	0	43987000	25845000	18142000	24987000	6940300	18047000	12531000	3152800	9378600	17631	304	16702	107494;107495;107496	144930;144931;144932;144933	144932			4	
GASDEDLKK	2	Unmodified	961.47164	0.47163978	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	1	0	5									2	1	1	1	5.9411	5.6172	2	0.00021853	3396	160511_QHF_FH_JSI9i_1	95.502	0			0.87594	0.86694	31.441	4	1	Median	1.8875	1.5182	NaN	1	1	Median	0.64064	0.75687	NaN	1	0	Median	0.8347	0.80999	NaN	1	0	Median	0.91921	0.92789	NaN	1	0	Median	361060000	184830000	176230000	60241000	25351000	34890000	110070000	66056000	44016000	76325000	35508000	40817000	114420000	57918000	56506000	17632	5114	16703	107497;107498;107499;107500;107501	144934;144935;144936	144936			3	
GASDEEIK	1	Unmodified	847.39233	0.39232683	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	4.67	5.19	2				1					1			2	8.7345	1.5187	2	2.0508E-08	4842	160511_QHF_FH_JSI9i_1	130.22	56.605			0.92738	0.96609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92738	0.96609	NaN	1	0	Median	3461800	1734500	1727300	0	0	0	0	0	0	0	0	0	3461800	1734500	1727300	17633	1262	16704	107502;107503;107504	144937;144938;144939	144938			3	
GASDTYVTYLIR	0	Unmodified	1357.6878	0.68778057	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			76.561	66.106	2	8.621E-05	33013	160513_QHF_FH_JSI10Kac_5	99.973	65.441			0.54833	0.63619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54833	0.63619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1544000	973540	570430	0	0	0	1544000	973540	570430	0	0	0	0	0	0	17634	2327	16705	107505	144940	144940			1	
GASEIILRK	1	Unmodified	985.59203	0.59202969	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		25.277	23.938	2	0.00056747	19335	160511_QHF_FH_JSI9i_3	93.267	39.11			1.9866	1.5801	NaN	1	1	Median	1.9866	1.5801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51848000	18976000	32872000	51848000	18976000	32872000	0	0	0	0	0	0	0	0	0	17635	1239	16706	107506;107507	144941;144942	144942			2	
GASEILLK	1	Unmodified	829.49092	0.49091866	2758	Q16720	ATP2B3	Plasma membrane calcium-transporting ATPase 3	yes	yes	0	0	0	0		By matching	By MS/MS		14	0							2				1	1		42.735	32.645	2	0.0089452	19690	160513_QHF_FH_JSI11Kac_4	69.905	0			0.79292	0.85386	4.343	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70621	0.82804	NaN	1	0	Median	0.89027	0.88049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10745000	5562400	5182300	0	0	0	2791000	1379300	1411800	7953800	4183200	3770600	0	0	0	17636	2758	16707	107508;107509	144943	144943			1	
GASFVTSTNPR	0	Unmodified	1135.5622	0.56218613	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.25	5.63		3						1		2	1	1		23.364	22.635	2	5.7198E-05	19322	160511_QHF_FH_JSI9i_2	94.309	72.223			1.0593	0.94706	2.0125	3	1	Plateau	1.0964	0.96178	NaN	1	0	Median	0.79886	0.94706	NaN	1	1	Median	0.90359	0.92415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69921000	34649000	35272000	31303000	14982000	16322000	17889000	9757000	8131800	20729000	9910300	10819000	0	0	0	17637	1694	16708	107510;107511;107512;107513	144944;144945;144946;144947;144948	144945			5	
GASGAGGPGGAAR	0	Unmodified	984.47371	0.47370547	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	2	1	5.1446	3.0733	2	1.6717E-10	2743	160511_QHF_FH_JSI12i_1	150.35	129.83			1.1269	1.2556	9.4427	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1221	1.3231	NaN	1	0	Median	1.1135	1.0956	1.2137	2	0	Median	1.1949	1.2411	NaN	1	0	Median	189970000	89605000	100370000	0	0	0	68272000	27881000	40392000	57470000	31391000	26078000	64233000	30333000	33900000	17638	4165	16709	107514;107515;107516;107517	144949;144950;144951;144952;144953	144950			5	
GASGSFVVVQK	1	Unmodified	1077.5819	0.58185894	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.17	1	1				3	1	2	3	2	4	3	2	40.738	33.569	2	1.8677E-88	20079	160513_QHF_FH_JSI11Kac_4	258	167.34			0.84322	0.79003	25.828	8	2	Median	0.79163	0.67107	24.063	2	0	Median	0.76149	0.88048	28.003	2	1	Median	0.95203	0.9246	30.634	3	0	Median	0.76834	0.78455	NaN	1	1	Median	205130000	100550000	104580000	8718800	4639400	4079400	8817500	5099300	3718100	70849000	35516000	35334000	116750000	55299000	61449000	17639	2927	16710	107518;107519;107520;107521;107522;107523;107524;107525;107526;107527;107528	144954;144955;144956;144957;144958;144959;144960;144961;144962;144963;144964;144965	144957			12	
GASGTFQLK	1	Unmodified	907.47633	0.47633123	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	26.669	25.945	2	0.00018322	22873	160511_QHF_FH_JSI10i_1	91.783	53.461			0.80414	0.96375	50.359	5	0	Median	0.80414	0.67096	NaN	1	0	Median	0.77382	0.96375	NaN	1	0	Median	0.78775	0.79871	NaN	1	0	Median	1.4642	1.58	63.069	2	0	Median	395190000	198290000	196900000	63771000	30402000	33369000	67893000	38521000	29372000	134350000	72402000	61945000	129180000	56962000	72213000	17640	2927	16711	107529;107530;107531;107532;107533;107534	144966;144967;144968	144967			3	
GASGTREDPNLVPSISNK	1	Unmodified	1840.9279	0.92790427	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.28	4	6	6				3	2		4	6	6	5	41.587	38.586	2;3	1.8526E-08	33996	160511_QHF_FH_JSI10i_2	127.22	116.4			0.93811	0.93827	12.628	21	3	Median	0.92071	0.78074	6.7866	4	0	Linear	0.8096	0.94213	13.772	6	2	Median	1.0379	0.97598	14.542	6	0	Median	0.9233	0.94602	8.6846	5	1	Median	2875500000	1502100000	1373500000	464620000	230810000	233800000	916740000	517290000	399450000	983470000	497650000	485810000	510700000	256320000	254390000	17641	974	16712	107535;107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546;107547;107548;107549;107550;107551;107552;107553;107554;107555	144969;144970;144971;144972;144973;144974;144975;144976;144977;144978;144979;144980;144981;144982;144983;144984;144985;144986;144987;144988;144989;144990;144991;144992;144993;144994;144995;144996;144997;144998;144999;145000;145001;145002;145003;145004;145005;145006;145007;145008;145009;145010	145005			40	
GASIAHCPNSNLSLSSGFLNVLEVLK	1	Unmodified	2726.4061	0.40614976	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.931	89.211	3	0.012867	51410	160513_QHF_FH_JSI10Kac_6	46.63	39.353			0.46161	0.53667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46161	0.53667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81085000	62072000	19013000	0	0	0	81085000	62072000	19013000	0	0	0	0	0	0	17642	5536	16713	107556	145011	145011			1	
GASIVEDK	1	Unmodified	817.41815	0.41814765	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	14.837	9.6744	2	8.4312E-05	7093	160513_QHF_FH_JSI12Kac_3	126.52	60.449			1.0145	1.0249	14.891	8	0	Median	1.0535	0.8384	12.468	2	0	Median	0.91048	1.0692	15.436	2	0	Median	1.0639	1.0496	5.4247	2	0	Median	1.0482	1.1228	10.862	2	0	Median	1749200000	822470000	926710000	467460000	204580000	262880000	435890000	223750000	212140000	446320000	230410000	215910000	399510000	163720000	235780000	17643	762	16714	107557;107558;107559;107560;107561;107562;107563;107564	145012;145013;145014;145015;145016;145017	145016			5	
GASKEILSEVER	1	Acetyl (K)	1358.7042	0.70415892	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			64.857	54.153	2	0.0036005	29458	160513_QHF_FH_JSI10Kac_4	69.01	35.144			0.96858	1.0952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96858	1.0952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2530300	1665800	864490	0	0	0	2530300	1665800	864490	0	0	0	0	0	0	17644	1655	16715	107565	145018	145018	1674		1	
GASLEEVNDEGYTPLMEAAR	0	Unmodified	2150.979	0.97901315	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			72.037	71.825	2	1.1797E-82	65136	160511_QHF_FH_JSI10i_1	243.78	226.56			0.91265	1.0618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91265	1.0618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40076000	17393000	22683000	0	0	0	40076000	17393000	22683000	0	0	0	0	0	0	17645	489	16716	107566	145019;145020;145021;145022	145022			4	
GASLLLYHR	0	Unmodified	1028.5767	0.57671398	3284	Q7Z6B7;O43295	SRGAP1;SRGAP3	SLIT-ROBO Rho GTPase-activating protein 1;SLIT-ROBO Rho GTPase-activating protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		46.034	37.01	2;3	9.0585E-33	20458	160513_QHF_FH_JSI10Kac_6	195.81	82.558			0.94192	1.0146	15.998	4	1	Median	1.5856	1.3322	NaN	1	1	Median	0.79766	0.95864	5.9173	2	0	Median	1.0565	1.0298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112660000	54044000	58618000	7078600	2393100	4685400	93967000	45594000	48373000	11616000	6056700	5559200	0	0	0	17646	3284	16717	107567;107568;107569;107570;107571	145023;145024;145025;145026;145027;145028;145029;145030	145029			8	
GASLLLYQR	0	Unmodified	1019.5764	0.57637963	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.7	4.4			1					3	3	3	2	2		56.479	47.736	2	1.6757E-05	39125	160511_QHF_FH_JSI9i_3	120.92	95.999			1.3004	1.213	18.962	7	1	Median	1.4878	1.213	24.452	3	1	Median	0.98645	1.166	12.133	2	0	Median	1.2764	1.2661	26.004	2	0	Median	NaN	NaN	NaN	0	0	Median	131890000	63816000	68077000	49287000	20840000	28448000	42206000	22945000	19260000	40400000	20031000	20369000	0	0	0	17647	467	16718	107572;107573;107574;107575;107576;107577;107578	145031;145032;145033;145034;145035;145036;145037;145038	145033			8	
GASNYVAK	1	Unmodified	808.40792	0.40791731	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				1	2		8.3765	8.2	2	0.01805	6056	160511_QHF_FH_JSI10i_1	48.036	28.473			0.70995	0.76063	11.636	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69756	0.82586	NaN	1	0	Median	0.72256	0.70055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	222000000	125300000	96696000	0	0	0	123570000	70213000	53353000	98433000	55091000	43342000	0	0	0	17648	129	16719	107579;107580;107581	145039;145040	145039			2	
GASQAGMTGYGMPR	0	Oxidation (M)	1398.602	0.6020188	1470	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.25	11	11	4			1	6	1		8	6	7	13	26.386	23.622	2	9.178E-44	28058	160511_QHF_FH_JSI12i_2	248.5	231.03			0.97044	1.026	18.267	27	7	Median	1.1112	0.9483	19.607	5	2	Median	0.91041	1.0582	14.654	6	2	Median	1.0516	1.044	19.003	6	1	Median	0.95868	1.0123	21.146	10	2	Median	1967800000	1021800000	945990000	334500000	165000000	169490000	219880000	97451000	122430000	221930000	101240000	120690000	1191400000	658080000	533370000	17649	1470	16720	107582;107583;107584;107585;107586;107587;107588;107589;107590;107591;107592;107593;107594;107595;107596;107597;107598;107599;107600;107601;107602;107603;107604;107605;107606;107607;107608;107609;107610;107611;107612;107613;107614;107615	145041;145042;145043;145044;145045;145046;145047;145048;145049;145050;145051;145052;145053;145054;145055;145056;145057;145058;145059;145060;145061;145062;145063;145064;145065;145066;145067;145068;145069;145070;145071;145072;145073;145074;145075;145076;145077;145078;145079;145080;145081;145082;145083	145048		1137;1138	41	
GASQAGMTGYGMPR	0	2 Oxidation (M)	1414.5969	0.59693343	1470	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	0	2	0		By MS/MS	By MS/MS	By MS/MS	5.08	5.78	8					3	1				2	3	7	15.586	12.218	2	8.8924E-07	8843	160511_QHF_FH_JSI12i_1	97.911	93.446			0.97784	1.0096	15.755	9	5	Median	NaN	NaN	NaN	0	0	Median	0.80891	0.92886	NaN	1	1	Median	1.021	0.99119	23.532	3	1	Median	0.97784	1.0114	12.01	5	3	Median	166800000	89397000	77404000	0	0	0	29493000	19543000	9949900	75474000	38126000	37348000	61834000	31728000	30106000	17650	1470	16720	107616;107617;107618;107619;107620;107621;107622;107623;107624;107625;107626;107627	145084;145085;145086;145087;145088;145089;145090;145091;145092;145093;145094;145095;145096	145088		1137;1138	13	
GASQAGMTGYGMPR	0	Unmodified	1382.6071	0.60710418	1470	P37802;Q9UI15	TAGLN2;TAGLN3	Transgelin-2;Transgelin-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.18	7	7	3				5	5		5	8	7	7	37.047	32.863	2;3	1.583E-177	29178	160511_QHF_FH_JSI9i_1	318.57	289.41			1.0029	1.0142	8.9058	27	8	Median	1.2041	1.0137	5.8523	5	2	Median	0.84364	1.0106	6.9184	8	2	Median	1.0098	0.99466	9.9991	7	2	Median	0.97959	1.0618	11.612	7	2	Median	11302000000	5618400000	5683400000	2256100000	1010100000	1246000000	2941100000	1571100000	1370000000	3316500000	1653800000	1662700000	2788100000	1383400000	1404700000	17651	1470	16720	107628;107629;107630;107631;107632;107633;107634;107635;107636;107637;107638;107639;107640;107641;107642;107643;107644;107645;107646;107647;107648;107649;107650;107651;107652;107653;107654	145097;145098;145099;145100;145101;145102;145103;145104;145105;145106;145107;145108;145109;145110;145111;145112;145113;145114;145115;145116;145117;145118;145119;145120;145121;145122;145123;145124;145125;145126;145127;145128;145129;145130;145131;145132;145133;145134	145119			34	
GASSPGILVLTTGLSK	1	Unmodified	1499.8559	0.85590853	2503	Q14155	ARHGEF7	Rho guanine nucleotide exchange factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.66			8					4		4	3	3	2	82.255	78.891	2;3	4.7635E-06	72403	160511_QHF_FH_JSI11i_3	145	129.46			1.0117	1.0289	24.591	11	2	Median	1.4127	1.178	44.784	3	2	Median	0.8741	1.0289	22.292	3	0	Median	0.97394	0.89842	14.586	3	0	Median	1.0728	1.0715	7.8054	2	0	Median	299010000	154590000	144420000	19350000	8001400	11348000	27953000	15177000	12776000	85581000	43630000	41950000	166130000	87781000	78350000	17652	2503	16721	107655;107656;107657;107658;107659;107660;107661;107662;107663;107664;107665;107666	145135;145136;145137;145138;145139;145140;145141;145142;145143;145144;145145;145146;145147	145136			13	
GASSPLITVFTDDK	1	Unmodified	1449.7351	0.73512469	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.748	2	2	1							2		2	1	77.045	76.36	2	5.2719E-06	67384	160511_QHF_FH_JSI9i_2	87.001	73.338			0.89468	0.89606	40.815	3	3	Median	0.83888	0.69149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89468	0.89606	NaN	1	1	Median	1.4629	1.5389	NaN	1	1	Median	275550000	125810000	149740000	121310000	56289000	65024000	0	0	0	63486000	28232000	35254000	90748000	41289000	49459000	17653	2638;2895	16722	107667;107668;107669;107670;107671	145148;145149;145150;145151;145152	145151			5	
GASSSTNDASDPTTK	1	Unmodified	1437.6219	0.62194543	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	6.9002	4.2653	2	4.9612E-81	4245	160511_QHF_FH_JSI12i_1	249.2	210.17			0.9371	1.0109	12.998	6	0	Median	1.3435	1.1303	NaN	1	0	Median	0.90118	1.0503	NaN	1	0	Median	0.96242	0.93711	5.3209	2	0	Median	0.86226	0.92457	21.379	2	0	Median	217180000	115070000	102110000	64243000	30538000	33705000	51254000	24036000	27218000	45699000	25284000	20416000	55988000	35213000	20775000	17654	594	16723	107672;107673;107674;107675;107676;107677	145153;145154;145155;145156;145157;145158;145159;145160	145156			8	
GASVFQVK	1	Unmodified	834.45995	0.45995289	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	30.458	29.875	2	0.0033353	25358	160511_QHF_FH_JSI11i_2	73.324	46.362			1.2004	1.2851	18.001	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2029	1.201	NaN	1	0	Median	1.0527	1.1402	25.101	2	0	Median	127650000	67484000	60163000	0	0	0	0	0	0	51227000	25297000	25930000	76419000	42187000	34233000	17655	3797	16724	107678;107679;107680	145161;145162;145163	145163			3	
GASWIDTADGSANHR	0	Unmodified	1556.6968	0.69678213	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	4	2	31.522	31.087	2;3	8.3817E-100	26794	160511_QHF_FH_JSI11i_3	256.19	219			1.0323	1.0088	18.107	8	2	Median	1.2273	1.0244	NaN	1	0	Median	0.74491	0.89943	3.1319	2	1	Median	1.0503	0.99623	13.34	3	1	Plateau	1.1568	1.1636	34.542	2	0	Median	669060000	332480000	336580000	63843000	25660000	38183000	109550000	61564000	47981000	316770000	144840000	171920000	178910000	100410000	78497000	17656	3594	16725	107681;107682;107683;107684;107685;107686;107687;107688;107689;107690	145164;145165;145166;145167;145168;145169;145170;145171;145172;145173;145174;145175	145167			10	
GASYILK	1	Unmodified	750.42759	0.42759012	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	26.764	25.612	2	0.014679	21363	160511_QHF_FH_JSI12i_2	65.803	39.977			1.4075	1.3377	72.004	2	2	Median	0.95952	0.80397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0648	2.2258	NaN	1	1	Median	118010000	58936000	59071000	73562000	43654000	29908000	0	0	0	0	0	0	44445000	15281000	29164000	17657	1363	16726	107691;107692	145176;145177	145176			2	
GATAAPQRK	1	Unmodified	898.49846	0.49846366	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				1.6482	1.1964	2	1.2984E-10	705	160511_QHF_FH_JSI9i_3	139.28	108.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17658	5543	16727	107693	145178	145178			1	
GATALEMGMPLLLQK	1	Unmodified	1571.8415	0.84152079	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	96.669	96.383	2	1.151E-05	85259	160511_QHF_FH_JSI10i_2	85.958	69.287			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17659	2977	16728	107694;107695;107696	145179;145180;145181	145181			3	
GATEGLSK	1	Unmodified	761.39193	0.3919329	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	5									1	2	1	1	29.602	29.07	1;2	0.043366	5317	160511_QHF_FH_JSI10i_1	47.349	5.1205			1.024	1.0212	47.704	5	1	Median	1.1675	0.96434	NaN	1	0	Median	0.5136	0.60433	74.195	2	1	Median	1.1206	1.0934	NaN	1	0	Median	1.024	1.0608	NaN	1	0	Median	558170000	355750000	202420000	53881000	27495000	26385000	346850000	254260000	92591000	82987000	41665000	41322000	74453000	32332000	42121000	17660	2297	16729	107697;107698;107699;107700;107701	145182;145183	145182			1	
GATELTHEDYMEGILEVQAK	1	Unmodified	2233.0573	0.057263467	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	76.343	75.099	3	0.000153	64818	160511_QHF_FH_JSI12i_2	58.848	34.561			0.69217	0.78039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69217	0.78039	NaN	1	1	Median	29561000	18749000	10812000	0	0	0	0	0	0	0	0	0	29561000	18749000	10812000	17661	1131	16730	107702;107703	145184;145185	145185			2	
GATGATTTIYAVEADGDPNAGFEK	1	Unmodified	2355.0866	0.086649341	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			65.515	65.161	3	0.0059844	59017	160511_QHF_FH_JSI10i_1	34.19	19.421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17662	183	16731	107704	145186	145186			1	
GATGEPEVMEPALEGTGK	1	Unmodified	1771.8298	0.82982971	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.739	52.071	2	1.4039E-22	46223	160511_QHF_FH_JSI9i_1	172.1	155.47			1.142	1.1666	20.323	4	1	Median	1.134	0.91793	NaN	1	0	Median	1.0686	1.2442	NaN	1	0	Median	1.1501	1.0939	NaN	1	1	Median	1.4067	1.4848	NaN	1	0	Median	211910000	96836000	115070000	50779000	24283000	26496000	50582000	24319000	26263000	48997000	28667000	20330000	61553000	19568000	41985000	17663	4749	16732	107705;107706;107707;107708	145187;145188;145189;145190;145191;145192	145192			6	
GATLALTQVTPQDER	0	Unmodified	1598.8264	0.82639932	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	5.13	5	1				2				1	3	1	3	52.325	51.656	2;3	3.0735E-65	46490	160511_QHF_FH_JSI10i_1	227.31	201.27			1.1345	1.1021	8.8261	5	2	Median	1.3048	1.0658	NaN	1	0	Median	0.80434	0.93173	NaN	1	0	Median	1.1345	1.1021	NaN	1	0	Median	1.1151	1.1522	2.0437	2	2	Median	495920000	228920000	267000000	103760000	45044000	58718000	100800000	54888000	45916000	87996000	40845000	47152000	203360000	88147000	115210000	17664	1554	16733	107709;107710;107711;107712;107713;107714;107715;107716	145193;145194;145195;145196;145197;145198;145199;145200;145201;145202;145203	145198			11	
GATLSHYNIVNNSNILGER	0	Unmodified	2071.0447	0.044665367	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			60.842	59.62	3	2.1717E-43	49883	160511_QHF_FH_JSI10i_3	209.25	199.72			1.0165	0.96756	10.601	4	0	Median	1.1801	0.96756	2.9957	2	0	Median	0.83476	0.99636	17.877	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225210000	101700000	123510000	122570000	52456000	70117000	102640000	49246000	53391000	0	0	0	0	0	0	17665	4007	16734	107717;107718;107719;107720	145204;145205;145206;145207	145204			3	
GATPAPPGK	1	Unmodified	794.42865	0.42865276	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4	5.2	3					1				1	1	2		11.253	9.1275	2	0.0001731	7401	160511_QHF_FH_JSI9i_1	87.323	0.52869			1.1317	1.0095	12.595	4	0	Median	1.1529	0.95385	NaN	1	0	Median	0.72651	0.86233	NaN	1	0	Median	1.1367	1.1075	5.0801	2	0	Median	NaN	NaN	NaN	0	0	Median	1733400000	915200000	818200000	555280000	252550000	302740000	566290000	343180000	223120000	611820000	319480000	292340000	0	0	0	17666	2409	16735	107721;107722;107723;107724	145208;145209;145210;145211;145212	145212			5	
GATPEGIFLR	0	Unmodified	1059.5713	0.57129425	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.957	54.445	2	0.028901	47121	160511_QHF_FH_JSI11i_2	47.603	32.164			1.9744	1.9736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9744	1.9736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	237760000	105910000	131850000	0	0	0	0	0	0	237760000	105910000	131850000	0	0	0	17667	3838	16736	107725	145213	145213			1	
GATPGKALVATPGK	2	Acetyl (K)	1308.7402	0.74015049	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	1	2	50.52	41.282	2;3	9.6517E-07	22439	160513_QHF_FH_JSI12Kac_3	109.84	88.214			0.8356	0.92266	6.2118	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88992	1.0444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85918	0.94814	3.8525	2	0	Median	28782000	16041000	12741000	0	0	0	5122200	3116900	2005300	1844200	0	1844200	21816000	12924000	8891400	17668	1154	16737	107726;107727;107728;107729	145214;145215;145216;145217	145216	1015		4	
GATPGKALVATPGKK	3	Acetyl (K)	1436.8351	0.83511351	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.5							1	6	1	2	1	1	4	42.261	32.355	3	2.025E-06	17758	160513_QHF_FH_JSI9Kac_5	110.25	101.43			0.061018	0.067768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.061018	0.067768	NaN	1	1	Median	18653000	18463000	189360	2996900	2996900	0	0	0	0	3528300	3528300	0	12128000	11938000	189360	17669	1154	16738	107730;107731;107732;107733;107734;107735;107736;107737	145218;145219;145220;145221;145222;145223;145224;145225	145219	1015		8	
GATQQILDEAER	0	Unmodified	1329.6525	0.6524577	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.39	4	5	7			5	2	1		4	5	7	8	42.27	38.1	2	3.8005E-195	33873	160511_QHF_FH_JSI10i_1	335.25	293.37			1.028	1.0785	30.271	18	4	Median	1.2642	1.025	9.4917	3	0	Median	0.94016	1.1077	8.6526	5	1	Median	1.1732	1.15	47.636	6	1	Median	0.9973	1.0663	31.813	4	2	Median	12092000000	5963300000	6129200000	1422600000	642000000	780580000	4059900000	2114800000	1945100000	3994800000	1957600000	2037200000	2615200000	1248900000	1366300000	17670	2090	16739	107738;107739;107740;107741;107742;107743;107744;107745;107746;107747;107748;107749;107750;107751;107752;107753;107754;107755;107756;107757;107758;107759;107760;107761	145226;145227;145228;145229;145230;145231;145232;145233;145234;145235;145236;145237;145238;145239;145240;145241;145242;145243;145244;145245;145246;145247;145248;145249;145250;145251;145252;145253;145254;145255;145256	145241			30	
GATVLPANTPGNVGSGK	1	Unmodified	1538.8053	0.80526994	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	41.64	39.254	2	6.6138E-16	35570	160511_QHF_FH_JSI12i_1	165.58	122.84			1.031	1.0114	24.755	5	0	Median	0.98881	0.81558	NaN	1	0	Median	0.7302	0.8691	NaN	1	0	Median	1.283	1.24	28.81	2	0	Median	1.0909	1.1439	NaN	1	0	Median	683140000	348440000	334700000	112440000	55735000	56709000	181300000	110270000	71026000	187920000	91489000	96434000	201480000	90943000	110530000	17671	1201	16740	107762;107763;107764;107765;107766	145257;145258;145259;145260;145261;145262;145263;145264;145265	145260			9	
GATVVTGGK	1	Unmodified	788.43922	0.43921744	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	9.8183	5.9763	2	0.00057058	4288	160513_QHF_FH_JSI10Kac_3	74.301	42.365			0.54379	0.55278	38.432	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74755	0.72539	NaN	1	1	Median	0.39557	0.42124	NaN	1	1	Median	343090000	257530000	85559000	0	0	0	0	0	0	4925900	2954700	1971200	338160000	254570000	83588000	17672	1746	16741	107767;107768;107769	145266;145267;145268	145268			3	
GATYGKPVHHGVNQLK	2	Acetyl (K)	1746.9166	0.91655173	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	32.458	23.593	2;3;4	8.0435E-08	13230	160513_QHF_FH_JSI11Kac_6	114.64	95.812			0.47293	0.44646	128.67	7	1	Median	1.0672	0.90652	NaN	1	0	Median	1.6513	1.9477	19.37	2	0	Median	0.34079	0.3262	44.383	2	0	Median	0.12883	0.13842	140.88	2	1	Median	343410000	224150000	119250000	8372400	3289800	5082600	99189000	38339000	60850000	206400000	156490000	49917000	29443000	26041000	3402100	17673	1951	16742	107770;107771;107772;107773;107774;107775;107776;107777;107778	145269;145270;145271;145272;145273;145274;145275;145276;145277;145278;145279;145280;145281;145282;145283	145270	1966		15	
GATYGKPVHHGVNQLK	2	Unmodified	1704.906	0.90598704	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.447	22.15	3	0.004124	17840	160511_QHF_FH_JSI9i_3	52.254	42.089			0.43841	0.36776	NaN	1	1	Median	0.43841	0.36776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12335000	9580100	2754400	12335000	9580100	2754400	0	0	0	0	0	0	0	0	0	17674	1951	16742	107779	145284	145284			1	
GATYPSEIPK	1	Unmodified	1061.5393	0.53932542	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	35.362	31.984	2	2.546E-09	28424	160511_QHF_FH_JSI11i_1	128.36	104.59			1.0415	1.0466	20.889	6	0	Median	1.037	0.85835	NaN	1	0	Median	0.69288	0.83387	NaN	1	0	Median	1.1204	1.1007	13.951	2	0	Median	1.1758	1.2564	19.023	2	0	Median	945050000	499200000	445860000	195350000	95106000	100250000	268340000	165840000	102500000	232200000	119640000	112560000	249160000	118610000	130550000	17675	3799	16743	107780;107781;107782;107783;107784;107785	145285;145286;145287;145288;145289;145290;145291;145292;145293;145294;145295	145286			11	
GAVAEDGDELRTEPEAK	1	Unmodified	1785.8381	0.83808621	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	5.02	9	1				3				2	4	4	3	29.163	26.713	2;3	5.0714E-21	23650	160511_QHF_FH_JSI11i_1	166.03	116.53			0.89849	0.93675	9.7943	13	2	Median	1.1109	0.91384	3.5013	2	0	Median	0.77337	0.92365	4.6666	4	0	Median	0.93834	0.91737	15.208	4	2	Median	0.88578	0.93842	10.51	3	0	Plateau	4198000000	2128900000	2069000000	740390000	365910000	374480000	1109500000	615640000	493870000	1424700000	716790000	707880000	923380000	430570000	492820000	17676	1294	16744	107786;107787;107788;107789;107790;107791;107792;107793;107794;107795;107796;107797;107798	145296;145297;145298;145299;145300;145301;145302;145303;145304;145305;145306;145307;145308;145309;145310;145311;145312;145313;145314;145315;145316;145317;145318;145319;145320	145297			24	
GAVAEDGDELRTEPEAKK	2	Unmodified	1913.933	0.93304923	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	2	6	4							2	3	3	4	22.276	21.771	3;4	4.215E-07	18282	160511_QHF_FH_JSI11i_3	101.15	87.724			0.88675	0.92087	25.064	12	0	Median	1.1456	0.9819	6.0872	2	0	Median	0.82864	0.97184	8.1985	3	0	Median	0.94401	0.90161	25.768	3	0	Plateau	0.78985	0.7964	36.001	4	0	Median	1049800000	522280000	527510000	169340000	71252000	98089000	307540000	168830000	138710000	333710000	168550000	165160000	239200000	113640000	125560000	17677	1294	16745	107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810	145321;145322;145323;145324;145325;145326;145327;145328;145329;145330;145331	145322			11	
GAVAIADAIR	0	Unmodified	955.54508	0.5450795	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.99	1	4	4				3	3		2	4	4	5	48.476	43.691	2	7.2871E-08	38354	160511_QHF_FH_JSI10i_2	123.72	77.35			0.97091	1.0046	54.27	15	2	Median	1.0922	0.89582	20.379	2	0	Median	0.78428	0.94837	27.071	4	1	Median	1.0292	0.99685	4.2345	4	0	Median	0.93684	1.0443	93.02	5	1	Median	1810600000	966990000	843600000	285570000	130210000	155360000	356010000	194730000	161270000	575590000	283540000	292050000	593420000	358500000	234910000	17678	1578	16746	107811;107812;107813;107814;107815;107816;107817;107818;107819;107820;107821;107822;107823;107824;107825	145332;145333;145334;145335;145336;145337;145338;145339;145340;145341;145342;145343;145344;145345;145346;145347;145348;145349;145350;145351;145352;145353;145354	145350			22	
GAVAMAETLK	1	Unmodified	989.52157	0.52156686	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.43	6.43	3						4				3	3	1	41.02	35.01	2	0.00076069	31221	160511_QHF_FH_JSI11i_1	83.948	52.658			0.81981	0.97884	36.127	7	4	Median	NaN	NaN	NaN	0	0	Median	0.64449	0.7546	21.447	3	1	Plateau	0.7142	0.69485	56.849	3	2	Plateau	0.79389	0.84757	NaN	1	1	Median	429780000	275890000	153880000	0	0	0	180400000	125340000	55068000	204840000	128090000	76749000	44535000	22468000	22067000	17679	1578	16747	107826;107827;107828;107829;107830;107831;107832	145355;145356;145357;145358;145359;145360	145355			5	
GAVASVTFDDFHK	1	Unmodified	1392.6674	0.66737948	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.14	4.45		4	2					1		1	1	3	2	53.278	51.128	3	3.1569E-05	43798	160511_QHF_FH_JSI12i_2	85.066	81.879			0.96619	0.88636	23.666	7	2	Median	0.96619	0.80707	NaN	1	0	Median	1.0302	1.2296	NaN	1	0	Median	0.88476	0.88636	20.356	3	2	Median	0.93408	1.0807	31.649	2	0	Median	449530000	227890000	221650000	62768000	30747000	32021000	63988000	38719000	25269000	182390000	89130000	93256000	140390000	69291000	71101000	17680	2573	16748	107833;107834;107835;107836;107837;107838;107839	145361;145362;145363;145364;145365;145366	145362			5	
GAVDAAVPTNIIAAK	1	Unmodified	1409.7878	0.78782897	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	5.66	1					2				1		1	1	63.829	62.78	2	0.0003155	55669	160511_QHF_FH_JSI9i_1	98.353	87.83			1.7969	1.4885	NaN	1	1	Median	1.7969	1.4885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88540000	35764000	52776000	88540000	35764000	52776000	0	0	0	0	0	0	0	0	0	17681	5321	16749	107840;107841;107842	145367;145368;145369	145368			3	
GAVDALAAALAHISGASSFEPR	0	Unmodified	2110.0807	0.080716522	4346	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			101.8	101.65	3	5.6817E-08	84317	160511_QHF_FH_JSI10i_3	90.464	69.231			1.095	1.2851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.095	1.2851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204880000	109880000	95008000	0	0	0	204880000	109880000	95008000	0	0	0	0	0	0	17682	4346	16750	107843	145370	145370			1	
GAVDDDVAEADIISTVEFNHSGELLATGDK	1	Unmodified	3087.452	0.45203314	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	99.924	99.776	3	1.0664E-06	90399	160511_QHF_FH_JSI12i_1	58.477	52.182			0.92607	0.91944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92607	0.91944	NaN	1	1	Median	14373000	8584700	5788200	0	0	0	0	0	0	0	0	0	14373000	8584700	5788200	17683	2052	16751	107844;107845;107846	145371;145372;145373	145371			3	
GAVDGGLSIPHSTK	1	Unmodified	1337.6939	0.69392858	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.42	7	9	9				6	8	5	8	12	11	13	39.115	34.416	2;3	9.1909E-99	29419	160511_QHF_FH_JSI12i_2	265.61	221.29			0.96927	1.0042	10.623	42	3	Median	1.1479	0.96991	12.439	8	0	Median	0.88901	1.0676	13.805	11	0	Median	0.96299	0.95123	6.7513	11	1	Median	0.95746	1.0305	8.3172	12	2	Median	20387000000	9977400000	10410000000	3261800000	1484000000	1777800000	4446300000	2275100000	2171200000	6667600000	3173100000	3494400000	6011300000	3045100000	2966100000	17684	1590	16752	107847;107848;107849;107850;107851;107852;107853;107854;107855;107856;107857;107858;107859;107860;107861;107862;107863;107864;107865;107866;107867;107868;107869;107870;107871;107872;107873;107874;107875;107876;107877;107878;107879;107880;107881;107882;107883;107884;107885;107886;107887;107888;107889;107890	145374;145375;145376;145377;145378;145379;145380;145381;145382;145383;145384;145385;145386;145387;145388;145389;145390;145391;145392;145393;145394;145395;145396;145397;145398;145399;145400;145401;145402;145403;145404;145405;145406;145407;145408;145409;145410;145411;145412;145413;145414;145415;145416;145417;145418;145419;145420;145421;145422;145423;145424;145425;145426;145427;145428;145429;145430;145431;145432;145433;145434;145435;145436;145437;145438;145439;145440;145441;145442;145443;145444;145445;145446;145447;145448;145449;145450;145451;145452;145453;145454;145455;145456;145457;145458;145459;145460;145461;145462;145463;145464;145465;145466;145467;145468;145469;145470;145471;145472;145473	145386			100	
GAVEAAHQAFPGWAGQSPGAR	0	Unmodified	2063.9926	0.99257022	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	3	1	1	51.153	50.082	2;3	7.3605E-23	41011	160511_QHF_FH_JSI9i_3	130.25	121.6			0.86594	0.9728	13.356	7	1	Median	1.3504	1.1302	8.5748	2	1	Median	0.80632	0.96534	6.3184	3	0	Plateau	0.86594	0.80271	NaN	1	0	Median	0.92735	0.98179	NaN	1	0	Median	471980000	236180000	235800000	90197000	36499000	53699000	256390000	137010000	119380000	78185000	38157000	40028000	47211000	24517000	22694000	17685	3479	16753	107891;107892;107893;107894;107895;107896;107897	145474;145475;145476;145477;145478;145479;145480;145481;145482;145483	145480			9	
GAVEAELDPVEYTLRK	1	Unmodified	1788.9258	0.92577901	568	O75817	POP7	Ribonuclease P protein subunit p20	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	66.949	66.653	2;3	2.5239E-16	57717	160511_QHF_FH_JSI12i_3	118.48	100.67			0.4797	0.48616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4797	0.48616	NaN	1	1	Median	169270000	120060000	49219000	0	0	0	0	0	0	0	0	0	169270000	120060000	49219000	17686	568	16754	107898;107899;107900;107901	145484;145485;145486;145487	145487			4	
GAVEALAAALAHISGATSVDQR	0	Unmodified	2107.1022	0.10218025	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	2	2	2	1	95.944	91.138	3	6.6186E-37	83755	160511_QHF_FH_JSI10i_3	186.92	143.13			0.99253	0.9167	15.124	7	0	Median	1.0074	0.84543	1.1643	2	0	Median	0.76152	0.88995	8.4235	2	0	Median	1.0371	0.97673	8.9702	2	0	Median	1.2039	1.271	NaN	1	0	Median	2846600000	1475700000	1370900000	445570000	212600000	232970000	1195300000	715010000	480290000	1174100000	533730000	640330000	31639000	14330000	17310000	17687	4940	16755	107902;107903;107904;107905;107906;107907;107908	145488;145489;145490;145491;145492;145493;145494	145489			6	
GAVEDVISR	0	Unmodified	944.49271	0.49270958	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	29.708	29.335	2	8.1577E-05	24782	160511_QHF_FH_JSI11i_2	95.358	42.572			0.88733	0.87112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88733	0.87112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42092000	27494000	14598000	0	0	0	0	0	0	42092000	27494000	14598000	0	0	0	17688	264	16756	107909;107910	145495;145496	145496			2	
GAVELENLPLK	1	Unmodified	1181.6656	0.66558856	2973	Q5THJ4	VPS13D	Vacuolar protein sorting-associated protein 13D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.545	74.301	3	0.036398	40712	160513_QHF_FH_JSI11Kac_6	30.872	12.56			0.75198	0.83664	223.55	4	4	Median	48.524	40.627	NaN	1	1	Median	1.4578	1.719	NaN	1	1	Median	0.32803	0.31167	NaN	1	1	Median	0.3879	0.40718	NaN	1	1	Median	533220000	176170000	357050000	199650000	47511000	152140000	246980000	104530000	142440000	48771000	15318000	33453000	37827000	8809400	29017000	17689	2973	16757	107911;107912;107913;107914	145497;145498;145499;145500	145497			4	
GAVFEGLGNVASVELK	1	Unmodified	1588.8461	0.84607213	4826	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.665	84.072	2	2.9581E-05	73958	160511_QHF_FH_JSI11i_2	84.169	68.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17690	4826	16758	107915	145501	145501			1	
GAVGALLVYDIAK	1	Unmodified	1288.7391	0.73908786	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.48		4	5					3	4	3	4	5	4	84.687	80.396	2;3	4.1039E-32	42466	160513_QHF_FH_JSI10Kac_6	185.71	150.49			0.96564	0.97332	16.784	16	1	Median	1.136	0.95989	18.954	3	1	Plateau	0.8061	0.92723	5.7792	4	0	Median	1.032	0.98893	21.853	5	0	Median	1.0392	1.0652	16.933	4	0	Median	4770100000	2294000000	2476100000	1001100000	493040000	508010000	977380000	543010000	434370000	1402800000	653790000	749050000	1388800000	604130000	784710000	17691	2009;2722	16759	107916;107917;107918;107919;107920;107921;107922;107923;107924;107925;107926;107927;107928;107929;107930;107931	145502;145503;145504;145505;145506;145507;145508;145509;145510;145511;145512;145513;145514;145515;145516;145517;145518;145519;145520;145521;145522;145523;145524;145525;145526;145527;145528;145529;145530;145531;145532;145533;145534;145535;145536	145536			35	
GAVGASVTSSTHEK	1	Unmodified	1329.6525	0.6524577	5057	Q9NW08	POLR3B	DNA-directed RNA polymerase III subunit RPC2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	10.145	10.193	2;3	3.0917E-23	7809	160511_QHF_FH_JSI11i_3	183.33	141.89			0.95967	0.92607	12.146	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.036	0.97356	4.2219	2	0	Median	0.81952	0.82872	12.857	2	0	Median	286130000	138880000	147240000	0	0	0	0	0	0	118740000	50939000	67804000	167380000	87943000	79440000	17692	5057	16760	107932;107933;107934;107935;107936	145537;145538;145539;145540;145541;145542;145543	145538			7	
GAVGATIGGVAWIGGK	1	Unmodified	1412.7776	0.77759863	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		2	10								3	3	6	73.139	72.844	2;3	3.3995E-57	62825	160511_QHF_FH_JSI12i_3	199.7	152.09			0.68471	0.7222	29.328	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68471	0.7222	29.328	2	0	Median	72081000	41119000	30962000	0	0	0	0	0	0	0	0	0	72081000	41119000	30962000	17693	3763	16761	107937;107938;107939;107940;107941;107942;107943;107944;107945;107946;107947;107948	145544;145545;145546;145547;145548;145549;145550;145551;145552;145553;145554;145555	145553			12	
GAVGGTFDR	0	Unmodified	878.42463	0.42463001	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.59	2	4	1				3			3	3	2	2	18.21	15.203	2	0.00014996	12564	160511_QHF_FH_JSI11i_2	89.355	60.206			0.97852	1.0543	15.485	10	3	Median	1.2893	1.1091	20.199	3	2	Median	0.88612	1.0891	4.4053	3	1	Plateau	1.0259	1.0199	5.6025	2	0	Median	0.75792	0.82555	8.3882	2	0	Median	770380000	372220000	398160000	189780000	80460000	109320000	253940000	127200000	126740000	145610000	72132000	73477000	181060000	92436000	88624000	17694	2346	16762	107949;107950;107951;107952;107953;107954;107955;107956;107957;107958	145556;145557;145558;145559;145560;145561;145562;145563;145564;145565;145566;145567;145568;145569;145570;145571	145566			16	
GAVHQLCQSLAGK	1	Unmodified	1367.698	0.6979681	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			4								3	1		27.04	26.059	2;3	9.8637E-05	22041	160511_QHF_FH_JSI11i_3	112.13	94.31			0.5422	0.62664	46.1	4	4	Median	NaN	NaN	NaN	0	0	Median	0.53589	0.65043	27.997	3	3	Plateau	0.35857	0.33027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204830000	129200000	75622000	0	0	0	135570000	83766000	51807000	69253000	45438000	23815000	0	0	0	17695	927	16763	107959;107960;107961;107962	145572;145573;145574;145575	145572			4	
GAVIATELK	1	Unmodified	900.52803	0.52803245	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.04	2	5	1			2	2	2		4	4	1	5	38.75	34.009	2	5.2577E-06	28646	160511_QHF_FH_JSI11i_2	116.37	62.817			0.83849	1.0883	25.35	14	5	Linear	1.1532	0.94986	11.806	4	1	Median	1.0788	1.2742	25.942	4	1	Median	1.0056	1.0408	NaN	1	0	Median	0.97972	1.0683	31.368	5	3	Plateau	3527400000	1819400000	1708000000	783970000	346320000	437650000	390510000	208480000	182040000	782410000	443430000	338980000	1570500000	821190000	749290000	17696	282	16764	107963;107964;107965;107966;107967;107968;107969;107970;107971;107972;107973;107974;107975;107976	145576;145577;145578;145579;145580;145581;145582;145583;145584;145585;145586;145587;145588;145589;145590;145591;145592;145593	145585			16	
GAVIVVSHDAR	0	Unmodified	1122.6146	0.61455605	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.39	6.55		8	5				1	6	8	6	8	8	6	23.005	18.026	2;3	1.2448E-35	10669	160513_QHF_FH_JSI10Kac_6	195.7	129.08			1.0713	1.0472	15.505	28	0	Median	1.2445	1.0454	8.9834	6	0	Median	0.96406	1.1488	20.545	8	0	Median	1.0694	1.0339	12.032	8	0	Median	1.008	1.0581	13.536	6	0	Median	4536700000	2254700000	2282000000	665360000	313540000	351830000	1016400000	520660000	495760000	1748500000	858790000	889670000	1106500000	561720000	544790000	17697	3634	16765	107977;107978;107979;107980;107981;107982;107983;107984;107985;107986;107987;107988;107989;107990;107991;107992;107993;107994;107995;107996;107997;107998;107999;108000;108001;108002;108003;108004	145594;145595;145596;145597;145598;145599;145600;145601;145602;145603;145604;145605;145606;145607;145608;145609;145610;145611;145612;145613;145614;145615;145616;145617;145618;145619;145620;145621;145622;145623;145624;145625;145626;145627;145628;145629;145630;145631;145632;145633;145634;145635;145636;145637;145638;145639;145640;145641;145642	145640			48	
GAVLAAVSSHK	1	Unmodified	1038.5822	0.58219329	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23			9						5	5	3	4	2	21.122	20.434	2;3	2.4898E-09	16812	160511_QHF_FH_JSI10i_3	129.38	96.542			0.71795	0.72025	43.704	9	1	Median	0.68454	0.55634	81.19	3	1	Median	0.7786	0.90014	4.6517	2	0	Median	0.71035	0.67563	28.046	2	0	Median	0.69919	0.71735	0.56972	2	0	Median	500670000	261120000	239550000	165820000	77622000	88199000	129160000	68029000	61135000	114480000	61430000	53051000	91206000	54039000	37167000	17698	221	16766	108005;108006;108007;108008;108009;108010;108011;108012;108013;108014;108015;108016;108017;108018	145643;145644;145645;145646;145647;145648;145649;145650;145651;145652;145653;145654;145655;145656	145646			11	
GAVLAQGQGDGTVSK	1	Unmodified	1386.7103	0.71030693	1618	P48382	RFX5	DNA-binding protein RFX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	21.429	20.703	2	1.2162E-07	17559	160511_QHF_FH_JSI9i_1	134.98	111.13			1.8784	1.2016	45.455	3	3	Plateau	2.1766	1.7543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2079	1.2369	57.605	2	2	Median	56213000	26361000	29852000	19171000	5921400	13249000	0	0	0	0	0	0	37043000	20440000	16603000	17699	1618	16767	108019;108020;108021;108022	145657;145658;145659;145660	145660			4	
GAVLHHLVNK	1	Unmodified	1086.6298	0.62981218	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS				3	0			3							3				17.724	16.563	2;3	0.0021311	13461	160511_QHF_FH_JSI9i_3	65.252	53.659			1.6362	1.3348	90.017	2	1	Median	1.6362	1.3348	90.017	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66673000	27520000	39153000	66673000	27520000	39153000	0	0	0	0	0	0	0	0	0	17700	4143	16768	108023;108024;108025	145661;145662;145663	145663			3	
GAVLPHFNVLFDGLSK	1	Unmodified	1712.925	0.92499115	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	96.365	96.054	3	1.035E-06	82905	160511_QHF_FH_JSI12i_3	124.92	113.31			0.86171	0.93171	13.862	4	0	Median	1.3039	1.0291	NaN	1	0	Median	0.88719	1.0217	NaN	1	0	Median	0.83221	0.77825	NaN	1	0	Median	0.83697	0.84966	NaN	1	0	Median	230680000	113670000	117010000	30436000	13997000	16439000	52094000	27039000	25055000	46537000	22803000	23734000	101610000	49830000	51784000	17701	2280	16769	108026;108027;108028;108029	145664;145665;145666;145667;145668	145668			5	
GAVLPIR	0	Unmodified	724.45956	0.45955895	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							1	3	3	4	34.613	34.015	2	0.00065914	28764	160511_QHF_FH_JSI11i_2	130.65	130.65			0.98349	0.97495	15.101	11	1	Median	1.1335	0.97495	NaN	1	0	Median	0.79281	0.94387	11.749	3	0	Median	0.99706	0.95395	8.9752	3	0	Median	1.0678	1.1436	21.416	4	1	Median	4473400000	2185900000	2287600000	476010000	222630000	253380000	903490000	471790000	431700000	1261400000	616180000	645210000	1832500000	875270000	957270000	17702	1370	16770	108030;108031;108032;108033;108034;108035;108036;108037;108038;108039;108040	145669;145670;145671;145672;145673;145674;145675;145676;145677;145678;145679;145680;145681;145682;145683;145684;145685;145686;145687;145688	145681			20	
GAVLPQEISQVNQHHK	1	Unmodified	1783.9329	0.93293007	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.705	35.577	3	5.8695E-06	30154	160511_QHF_FH_JSI12i_3	108.71	97.925			1.0123	1.0156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0123	1.0156	NaN	1	0	Median	54658000	28700000	25959000	0	0	0	0	0	0	0	0	0	54658000	28700000	25959000	17703	3482	16771	108041	145689	145689			1	
GAVLVCDMSSNFLSK	1	Unmodified	1626.7746	0.77456344	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	78.4	77.483	2	0.00038015	68144	160511_QHF_FH_JSI11i_2	94.616	59.075			3.8464	4.0384	68.667	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.6869	6.5627	NaN	1	1	Median	2.2125	2.4851	NaN	1	1	Median	20755000	6031100	14724000	0	0	0	0	0	0	11561000	3540400	8021000	9193700	2490700	6703000	17704	5697	16772	108042;108043	145690;145691	145691			2	
GAVLVCDMSSNFLSKPVDVSK	2	Unmodified	2252.1181	0.11808959	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			80.47	79.764	3	0.00020286	71024	160511_QHF_FH_JSI10i_2	55.588	36.296			1.3136	1.6047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3136	1.6047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20250000	9299700	10950000	0	0	0	20250000	9299700	10950000	0	0	0	0	0	0	17705	5697	16773	108044	145692	145692			1	
GAVNALFTVPHTHVFYLTQSFR	0	Unmodified	2504.2965	0.29646338	3664	Q8NFZ0	FBXO18	F-box only protein 18	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		85.055	75.738	4	3.1799E-05	41960	160513_QHF_FH_JSI11Kac_6	108.08	97.396			1.7216	1.7179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7216	1.7179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34802000	11879000	22924000	0	0	0	0	0	0	34802000	11879000	22924000	0	0	0	17706	3664	16774	108045	145693	145693			1	
GAVNMPFMDFLTEDGFEK	1	Unmodified	2046.9067	0.90669983	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.15	102.09	3	0.00019691	90664	160511_QHF_FH_JSI10i_2	68.567	59.403			0.51963	0.635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51963	0.635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51710000	37787000	13923000	0	0	0	51710000	37787000	13923000	0	0	0	0	0	0	17707	2760	16775	108046	145694	145694			1	
GAVPPSIQDLTDHDLFAIK	1	Unmodified	2036.0579	0.057855815	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.976	95.432	3	0.050562	82162	160511_QHF_FH_JSI12i_2	19.057	9.4773			1.3584	1.5066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3584	1.5066	NaN	1	0	Median	20549000	9685900	10863000	0	0	0	0	0	0	0	0	0	20549000	9685900	10863000	17708	4771	16776	108047	145695;145696	145696			2	
GAVQSGVDK	1	Unmodified	859.43995	0.43994572	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.87	5		2			1				2	2	1	3	7.2317	5.6842	2	2.693E-05	4329	160511_QHF_FH_JSI9i_1	103.83	34.401			1.0183	1.0122	12.144	6	1	Median	1.1224	0.90339	16.326	2	0	Median	0.91037	1.0104	NaN	1	0	Median	1.123	1.0767	NaN	1	0	Median	0.93626	1.013	14.823	2	1	Median	3210900000	1653600000	1557300000	1108400000	588560000	519870000	20445000	12131000	8314400	979540000	490750000	488780000	1102500000	562200000	540290000	17709	434	16777	108048;108049;108050;108051;108052;108053;108054;108055	145697;145698;145699;145700;145701;145702;145703;145704	145703			8	
GAVQSGVDKTK	2	Acetyl (K)	1130.5932	0.5931519	434	O60664	PLIN3	Perilipin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	20.02	12.828	2	3.4974E-07	8326	160513_QHF_FH_JSI10Kac_3	114.5	72.387			0.67289	0.71729	36.269	6	0	Median	NaN	NaN	NaN	0	0	Median	1.005	1.1541	5.5863	2	0	Median	0.55064	0.52408	6.6199	2	0	Median	0.67289	0.71729	13.522	2	0	Median	19179000	10752000	8427100	0	0	0	6077400	2892200	3185200	5878800	3477800	2401100	7222800	4382000	2840800	17710	434	16778	108056;108057;108058;108059;108060;108061	145705;145706;145707;145708;145709	145708	219		5	
GAVSAEQVIAGFNR	0	Unmodified	1417.7314	0.73137672	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.26	7	8	5				2	8	1	6	9	8	8	69.697	65.55	2;3	4.122E-201	57025	160511_QHF_FH_JSI12i_3	330.41	293.06			0.93339	0.96675	16.649	31	3	Median	1.1646	0.99962	28.094	6	0	Median	0.78984	0.92377	8.1524	9	1	Median	1.0153	1.0154	14.778	8	1	Median	0.87784	0.97159	15.02	8	1	Median	3511800000	1785600000	1726200000	407090000	196640000	210450000	826040000	458880000	367160000	1358800000	663430000	695350000	919850000	466630000	453210000	17711	5313	16779	108062;108063;108064;108065;108066;108067;108068;108069;108070;108071;108072;108073;108074;108075;108076;108077;108078;108079;108080;108081;108082;108083;108084;108085;108086;108087;108088;108089;108090;108091;108092	145710;145711;145712;145713;145714;145715;145716;145717;145718;145719;145720;145721;145722;145723;145724;145725;145726;145727;145728;145729;145730;145731;145732;145733;145734;145735;145736;145737;145738;145739;145740;145741;145742;145743;145744;145745;145746;145747;145748;145749;145750;145751;145752;145753;145754;145755;145756;145757	145756			45	
GAVTDDEVIRK	1	Acetyl (Protein N-term)	1243.6408	0.64083038	3048	Q6I9Y2	THOC7	THO complex subunit 7 homolog	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.78	34.387	2	7.0878E-10	30684	160511_QHF_FH_JSI10i_1	94.692	79.827			0.81128	0.919	8.4631	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72682	0.86225	NaN	1	0	Median	0.99235	0.97949	NaN	1	0	Median	0.81128	0.83453	NaN	1	0	Median	634980000	340540000	294440000	0	0	0	217950000	126660000	91284000	227050000	112950000	114100000	189990000	100930000	89055000	17712	3048	16780	108093;108094;108095;108096	145758;145759;145760;145761;145762;145763;145764	145763			7	
GAVTLPLAAYQHYILAK	1	Unmodified	1828.0247	0.024705193	3568	Q8N8Q8	COX18	Mitochondrial inner membrane protein COX18	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.993	90.438	3	6.9717E-06	78343	160511_QHF_FH_JSI12i_3	90.707	81.177			1.3382	1.3421	35.075	4	1	Median	1.7941	1.4832	NaN	1	0	Median	1.4121	1.6544	NaN	1	0	Median	1.2682	1.2143	NaN	1	1	Median	0.76194	0.7489	NaN	1	0	Median	115210000	55858000	59354000	21204000	6853600	14351000	18417000	8693400	9724100	29987000	15275000	14712000	45603000	25036000	20567000	17713	3568	16781	108097;108098;108099;108100	145765;145766;145767;145768;145769	145769			5	
GAVTSEALK	1	Unmodified	874.476	0.47599688	3088	Q6P161	MRPL54	39S ribosomal protein L54, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	16.444	16.091	2	0.0078489	13541	160511_QHF_FH_JSI10i_1	52.937	15.378			0.9012	0.99692	0.16592	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83732	0.99809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96994	0.99575	NaN	1	0	Median	356340000	201290000	155040000	0	0	0	183250000	105160000	78093000	0	0	0	173080000	96135000	76949000	17714	3088	16782	108101;108102	145770;145771	145771			2	
GAVVAGSR	0	Unmodified	715.39769	0.39768698	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	3	2	5.8274	4.6583	2	0.0011596	3503	160511_QHF_FH_JSI10i_2	111.04	37.061			0.7489	0.83213	20.984	9	2	Median	0.87233	0.73626	39.288	2	1	Median	0.72511	0.87299	9.7701	2	1	Median	0.69894	0.84303	23.801	3	0	Plateau	0.68391	0.73445	17.659	2	0	Median	3492000000	1908300000	1583700000	729980000	336200000	393790000	910920000	526210000	384710000	922380000	477730000	444640000	928700000	568160000	360540000	17715	1667	16783	108103;108104;108105;108106;108107;108108;108109;108110;108111;108112	145772;145773;145774;145775;145776;145777;145778	145777			7	
GAVVATYR	0	Unmodified	835.4552	0.45520186	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.628	15.691	2	0.024383	12449	160511_QHF_FH_JSI12i_3	44.395	28.101			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17716	3372	16784	108113	145779	145779			1	
GAVVGIDLGTTNSCVAVMEGK	1	Unmodified	2077.0184	0.018375541	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	79.871	79.484	2;3	4.0321E-44	72375	160511_QHF_FH_JSI11i_1	169.19	156.42			0.67786	0.71133	31.148	4	2	Median	NaN	NaN	NaN	0	0	Median	0.67562	0.78249	NaN	1	0	Median	0.6801	0.64665	NaN	1	1	Median	0.85175	0.87864	47.777	2	1	Median	117480000	62583000	54897000	0	0	0	39094000	22695000	16399000	21899000	15104000	6794900	56487000	24784000	31703000	17717	1480	16785	108114;108115;108116;108117;108118	145780;145781;145782;145783;145784;145785;145786;145787	145782			8	
GAVVVLNMVEASR	0	Unmodified	1343.7231	0.72312022	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	73.081	69.147	2	1.2952E-19	37648	160513_QHF_FH_JSI10Kac_6	147.74	117.56			0.89706	0.87965	22.83	7	0	Median	1.417	1.1904	16.491	2	0	Median	0.86944	0.98512	17.215	2	0	Median	0.80908	0.7714	18.572	2	0	Median	0.77215	0.7968	NaN	1	0	Median	255750000	136850000	118900000	54565000	25478000	29087000	83946000	43473000	40473000	67326000	40049000	27277000	49911000	27853000	22059000	17718	4704	16786	108119;108120;108121;108122;108123;108124;108125	145788;145789;145790;145791;145792;145793;145794;145795;145796;145797	145797			7	
GAVVVLNMVEASR	0	Oxidation (M)	1359.718	0.71803484	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		15	0								3		1	1	1		60.629	49.965	2	0.00024598	25315	160513_QHF_FH_JSI10Kac_5	87.298	72.147			0.87081	0.86765	0.024386	2	1	Median	1.0359	0.8675	NaN	1	1	Median	0.73206	0.8678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8396600	4426200	3970400	4455400	2196100	2259400	3941200	2230200	1711000	0	0	0	0	0	0	17719	4704	16786	108126;108127;108128	145798;145799;145800;145801	145801		2520	4	
GAVWGATLNK	1	Unmodified	1015.5451	0.5450795	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22		4	4					1	1	4	2	2	2	42.902	41.081	2	6.8373E-14	34992	160511_QHF_FH_JSI12i_3	178.83	128.79			1.0545	0.99063	9.71	9	0	Median	1.3088	1.1235	12.327	3	0	Median	0.82001	0.98897	9.8976	2	0	Median	1.0072	0.98246	1.1722	2	0	Median	0.95637	1.0118	11.485	2	0	Median	4634200000	2107300000	2527000000	600650000	235690000	364950000	696920000	373920000	323000000	1338100000	595030000	743050000	1998600000	902620000	1096000000	17720	5595	16787	108129;108130;108131;108132;108133;108134;108135;108136;108137;108138	145802;145803;145804;145805;145806;145807;145808;145809;145810;145811;145812;145813;145814;145815;145816	145815			14	
GAVWGATLNKDATK	2	Acetyl (K)	1472.7623	0.7623425	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		64.89	53.826	2	0.00038019	30201	160513_QHF_FH_JSI11Kac_4	107.24	83.868			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1467000	1467000	0	0	0	0	0	0	0	1467000	1467000	0	0	0	0	17721	5595	16788	108139	145817	145817	3493		1	
GAVYSFDPVGSYQR	0	Unmodified	1544.726	0.72595699	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.46	4	4	2				4	4	1	5	4	5	5	65.331	59.929	2	1.2619E-30	53143	160511_QHF_FH_JSI10i_2	241.4	231.03			1.0463	1.1081	8.7726	19	6	Median	1.3541	1.1499	5.8073	5	2	Median	0.8623	1.0445	10.475	4	0	Linear	1.012	1.0494	7.208	5	2	Median	0.99929	1.114	9.9956	5	2	Median	4594000000	2264000000	2330000000	859530000	357250000	502280000	1054800000	558260000	496540000	1488400000	731520000	756900000	1191200000	616970000	574270000	17722	1177	16789	108140;108141;108142;108143;108144;108145;108146;108147;108148;108149;108150;108151;108152;108153;108154;108155;108156;108157;108158	145818;145819;145820;145821;145822;145823;145824;145825;145826;145827;145828;145829;145830;145831;145832;145833;145834;145835;145836;145837;145838;145839;145840;145841;145842;145843;145844;145845;145846	145844			29	
GAVYSMVEFNGK	1	Unmodified	1300.6122	0.61217279	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.34		2	1					3		3	1	1	1	63.466	56.509	2	1.8434E-14	48492	160511_QHF_FH_JSI12i_2	137.95	104.58			1.1524	0.97088	5.8039	5	5	Median	1.1938	1.0336	5.1956	3	3	Median	0.81869	0.96427	NaN	1	1	Median	0.98122	0.93208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	151030000	70200000	80832000	145490000	67256000	78231000	2864900	1405100	1459900	2680300	1539300	1141000	0	0	0	17723	2734	16790	108159;108160;108161;108162;108163;108164	145847;145848;145849;145850;145851;145852	145847			6	
GAVYSMVEFNGK	1	Oxidation (M)	1316.6071	0.60708741	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	0		By matching	By MS/MS	By MS/MS	15	0								3			1	1	1	51.264	40.725	2	0.0084078	22642	160513_QHF_FH_JSI11Kac_5	51.268	32.956			0.82753	0.87806	23.264	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65056	0.74488	NaN	1	0	Median	1.0526	1.0351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5151300	2754500	2396700	0	0	0	1939900	917360	1022500	3211400	1837200	1374200	0	0	0	17724	2734	16790	108165;108166;108167	145853;145854	145853		2112	2	
GAWDWSMLWK	1	Unmodified	1278.5856	0.5855641	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	92.382	84.8	2	1.8175E-07	45143	160513_QHF_FH_JSI12Kac_6	115.71	78.37			1.7241	1.9364	67.695	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0213	1.1998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.9105	3.1253	NaN	1	1	Median	196760000	77209000	119550000	0	0	0	103510000	53950000	49557000	0	0	0	93250000	23259000	69991000	17725	3301	16791	108168;108169	145855;145856	145855			2	
GAWSIPWK	1	Unmodified	943.49159	0.49158736	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	3	1	1	69.204	68.556	2	0.00039407	56288	160511_QHF_FH_JSI9i_3	104.45	74.875			1.2706	1.2197	48.376	4	2	Median	1.0059	0.84161	NaN	1	1	Median	2.2122	2.6559	NaN	1	0	Median	1.3237	1.2336	NaN	1	0	Median	1.2197	1.2059	NaN	1	1	Median	537180000	232490000	304680000	103060000	47712000	55351000	52940000	9516800	43423000	158640000	71085000	87551000	222540000	104180000	118360000	17726	2528	16792	108170;108171;108172;108173;108174;108175;108176	145857;145858;145859;145860;145861;145862;145863	145861			7	
GAWSNVLR	0	Unmodified	901.477	0.47699993	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.54		3	4					1	4	4	3	3	2	46.041	41.571	2	7.6358E-22	33861	160511_QHF_FH_JSI9i_3	192.11	143.6			0.97101	0.97826	16.86	12	0	Median	1.1806	0.99224	27.566	4	0	Median	0.83611	1.001	3.0994	3	0	Median	1.0485	1.0519	7.8652	3	0	Plateau	0.8585	0.87624	5.19	2	0	Median	9516400000	4990600000	4525800000	2965700000	1443100000	1522700000	3404900000	1947900000	1457100000	2179500000	1116800000	1062700000	966230000	482800000	483440000	17727	1014;826;1013	16793	108177;108178;108179;108180;108181;108182;108183;108184;108185;108186;108187;108188	145864;145865;145866;145867;145868;145869;145870;145871;145872;145873;145874;145875;145876;145877;145878;145879;145880;145881;145882;145883;145884;145885;145886	145873			23	
GAYDIFLNAK	1	Unmodified	1110.571	0.5709599	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.31	2	4	1				2	3		2	4	2	4	70.078	65.11	2	6.1239E-09	32229	160513_QHF_FH_JSI10Kac_5	124.23	97.268			0.91618	0.92883	28.266	12	3	Median	1.1326	0.97069	13.131	2	1	Median	0.57689	0.69069	42.93	4	1	Median	0.96372	0.97477	7.8443	2	1	Median	0.91618	0.98143	16.784	4	0	Median	1785300000	960400000	824950000	377320000	188260000	189060000	380520000	196410000	184110000	529380000	292580000	236800000	498120000	283150000	214980000	17728	1544	16794	108189;108190;108191;108192;108193;108194;108195;108196;108197;108198;108199;108200	145887;145888;145889;145890;145891;145892;145893;145894;145895;145896;145897;145898;145899	145899			12	
GAYGGGYGGYDDYNGYNDGYGFGSDR	0	Unmodified	2716.0375	0.037467316	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		64.033	63.59	2	0.00024242	57795	160511_QHF_FH_JSI11i_1	70.98	68.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17729	1383	16795	108201	145900	145900			1	
GAYGVVEK	1	Unmodified	821.42832	0.42831841	1772;1587	P46734;P52564	MAP2K3;MAP2K6	Dual specificity mitogen-activated protein kinase kinase 3;Dual specificity mitogen-activated protein kinase kinase 6	no	no	0	0	0	0	By MS/MS		By MS/MS		1.33	0.471	2	1								2		1		16.536	15.87	2	0.0049375	13179	160511_QHF_FH_JSI9i_1	67.169	33.619			1.1967	1.0702	30.265	3	0	Plateau	0.97639	0.82252	37.992	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0651	1.0471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	302620000	151390000	151230000	174530000	83561000	90973000	0	0	0	128090000	67832000	60255000	0	0	0	17730	1587;1772	16796	108202;108203;108204	145901;145902	145902			2	
GAYGVVEKMR	1	Acetyl (K);Oxidation (M)	1166.5754	0.57539335	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		35.409	25.589	2	0.0084945	15067	160513_QHF_FH_JSI11Kac_5	66.621	57.407			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1005800	1005800	0	0	0	0	0	0	0	1005800	1005800	0	0	0	0	17731	1772	16797	108205	145903	145903	1786	1461	1	
GAYILFYQK	1	Unmodified	1101.5859	0.58588168	3201	Q70EL4	USP43	Ubiquitin carboxyl-terminal hydrolase 43	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	70.89	63.352	2	6.594E-05	33198	160513_QHF_FH_JSI12Kac_6	114.72	90.953			0.87825	1.0456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87825	1.0456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38573000	23915000	14657000	0	0	0	38573000	23915000	14657000	0	0	0	0	0	0	17732	3201	16798	108206;108207	145904;145905	145904			1	
GAYIYNALIEFIR	0	Unmodified	1541.8242	0.82421447	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	6.01		1	3	1					8	3	3	4	3	97.569	91.193	2;3	7.0409E-63	49307	160513_QHF_FH_JSI11Kac_6	259.08	220.78			0.98593	1.0012	10.626	12	0	Median	1.2263	1.0443	4.7162	3	0	Median	0.89233	1.0459	0.443	2	0	Median	1.0544	1.0005	15.19	4	0	Median	0.9285	0.96187	10.002	3	0	Median	13933000000	6831400000	7102000000	3189200000	1340900000	1848400000	3576400000	1990900000	1585500000	3948500000	1801000000	2147400000	3219300000	1698700000	1520700000	17733	1282	16799	108208;108209;108210;108211;108212;108213;108214;108215;108216;108217;108218;108219;108220	145906;145907;145908;145909;145910;145911;145912;145913;145914;145915;145916;145917;145918;145919;145920;145921;145922;145923	145909			18	
GAYPIIFTAWK	1	Unmodified	1265.6808	0.6808447	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.17		3	6						4	2	4	4	3	89.874	86.709	2	9.1014E-12	42694	160513_QHF_FH_JSI9Kac_6	145.17	133.32			0.93644	0.95255	19.548	12	1	Median	1.2152	1.0087	12.551	2	0	Median	0.88259	1.017	29.87	4	1	Median	0.97647	0.93485	8.6934	3	0	Median	1.0112	1.0212	11.469	3	0	Plateau	750150000	367800000	382350000	185700000	84351000	101350000	184540000	94726000	89814000	220630000	112530000	108110000	159270000	76201000	83070000	17734	3079	16800	108221;108222;108223;108224;108225;108226;108227;108228;108229;108230;108231;108232;108233	145924;145925;145926;145927;145928;145929;145930;145931;145932;145933;145934;145935;145936;145937;145938;145939;145940;145941;145942;145943	145939			19	
GAYQDRDK	1	Unmodified	951.44101	0.44100836	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			1.3642	1.0102	2	0.012458	572	160511_QHF_FH_JSI10i_2	84.743	53.44			0.96648	0.98316	26.288	2	0	Median	0.94455	0.81639	NaN	1	0	Median	0.98892	1.184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45747000	22337000	23410000	19571000	9520900	10050000	26176000	12816000	13360000	0	0	0	0	0	0	17735	1722	16801	108234;108235	145944	145944			1	
GAYQDRDKPAQIR	1	Unmodified	1516.7746	0.77463852	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				12.441	11.644	4	0.0043191	8939	160511_QHF_FH_JSI9i_3	32.624	26.729			1.1971	0.96886	NaN	1	0	Median	1.1971	0.96886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64501000	24784000	39718000	64501000	24784000	39718000	0	0	0	0	0	0	0	0	0	17736	1722	16802	108236	145945	145945			1	
GAYSLSIR	0	Unmodified	865.46577	0.46576654	884;845	P06241;P09769;P07947	FYN;FGR;YES1	Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Fgr;Tyrosine-protein kinase Yes	no	no	0	0	0	0		By MS/MS			3	0			1								1			37.097	35.639	2	0.022919	29711	160511_QHF_FH_JSI10i_3	54.611	27.649			0.86319	0.98643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86319	0.98643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36491000	20932000	15558000	0	0	0	36491000	20932000	15558000	0	0	0	0	0	0	17737	845;884	16803	108237	145946	145946			1	
GAYSVGPLHSDLEYTVTSQK	1	Unmodified	2151.0484	0.048413341	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	63.001	62.59	2;3	6.8699E-43	55495	160511_QHF_FH_JSI11i_3	241.8	234.18			1.137	1.1131	13.773	7	2	Median	1.1321	0.96698	NaN	1	0	Median	0.81818	0.98507	NaN	1	0	Median	1.2673	1.2114	18.376	3	2	Plateau	1.1667	1.204	0.12193	2	0	Median	1145300000	542590000	602690000	80693000	40945000	39749000	117160000	63967000	53193000	564350000	279220000	285130000	383070000	158460000	224620000	17738	2638;2895	16804	108238;108239;108240;108241;108242;108243;108244	145947;145948;145949;145950;145951;145952;145953;145954;145955	145948			7	
GAYTQVIFLAR	0	Unmodified	1237.6819	0.68190733	965	P10253	GAA	Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.288	68.917	2	1.3772E-31	37571	160513_QHF_FH_JSI10Kac_6	195.58	159.63			1.4119	1.6646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4119	1.6646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	372440000	136760000	235670000	0	0	0	372440000	136760000	235670000	0	0	0	0	0	0	17739	965	16805	108245	145956	145956			1	
GCAFAQFMTQEAAQK	1	Unmodified	1686.7494	0.74941132	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		65.529	65.529	2	1.2956E-06	58317	160511_QHF_FH_JSI11i_3	155.97	143.41			0.98878	0.91504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98878	0.91504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14145000	9597500	4547200	0	0	0	0	0	0	14145000	9597500	4547200	0	0	0	17740	5058	16806	108246	145957	145957			1	
GCAFVTFTTR	0	Unmodified	1158.5492	0.5491786	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	2	2	4	2	55.685	50.656	2	3.6893E-07	27509	160513_QHF_FH_JSI11Kac_6	109.71	82.46			0.95864	1.002	23.297	10	6	Median	1.3741	1.139	4.0634	2	1	Median	0.86718	1.0025	4.6131	2	1	Median	0.83143	0.77735	21.012	4	4	Median	1.1078	1.142	13.964	2	0	Median	608040000	309970000	298060000	51767000	21220000	30547000	152860000	78630000	74231000	282870000	153380000	129490000	120540000	56742000	63798000	17741	3897	16807	108247;108248;108249;108250;108251;108252;108253;108254;108255;108256	145958;145959;145960;145961;145962;145963;145964;145965;145966;145967;145968;145969	145962			12	
GCALQCAILSPAFK	1	Unmodified	1534.7636	0.76360482	1417;3852;723	P34932;O95757;Q92598	HSPA4;HSPA4L;HSPH1	Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							1		2	3	74.718	74.066	2	3.0135E-23	66087	160511_QHF_FH_JSI11i_3	147.37	125.9			1.2597	1.2837	15.592	5	4	Median	1.4362	1.2109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0364	1.0375	NaN	1	0	Median	1.2597	1.2986	12.417	3	3	Median	238960000	105240000	133720000	40000000	18939000	21061000	0	0	0	88364000	36811000	51553000	110600000	49486000	61111000	17742	1417;723;3852	16808	108257;108258;108259;108260;108261;108262	145970;145971;145972;145973;145974;145975	145970			6	
GCAQALR	0	Unmodified	774.38066	0.38065671	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.8	5.88		3					2					2	3	7.2326	3.1283	2	2.3709E-08	4077	160511_QHF_FH_JSI12i_2	132.8	102.73			0.99067	1.0321	12.108	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9694	0.94739	NaN	1	1	Median	1.0124	1.1243	NaN	1	1	Median	228360000	100400000	127960000	0	0	0	0	0	0	11675000	6483200	5191700	216690000	93918000	122770000	17743	1234	16809	108263;108264;108265;108266;108267	145976;145977;145978;145979;145980	145977			5	
GCAVVEFK	1	Unmodified	908.44259	0.44258826	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.062	30.827	2	0.0058946	27552	160511_QHF_FH_JSI11i_1	60.895	48.702			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17744	1765	16810	108268	145981	145981			1	
GCAYIVMVHR	0	Unmodified	1204.5845	0.58451825	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	46.109	36.911	2;3	1.7061E-19	20374	160513_QHF_FH_JSI10Kac_6	173.88	141.94			0.91553	0.96097	26.126	8	4	Median	1.0682	0.90854	NaN	1	1	Median	0.84887	1.0132	11.222	3	2	Median	0.83581	0.81713	7.6776	2	0	Median	1.4215	1.5343	9.6568	2	1	Median	300650000	165900000	134750000	26055000	12170000	13885000	166000000	102430000	63568000	80896000	40815000	40080000	27693000	10476000	17217000	17745	644	16811	108269;108270;108271;108272;108273;108274;108275;108276;108277	145982;145983;145984;145985;145986;145987;145988;145989;145990;145991;145992;145993;145994	145994			13	
GCAYIVMVHR	0	Oxidation (M)	1220.5794	0.57943287	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		36.615	27.716	2;3	0.00013306	15603	160513_QHF_FH_JSI10Kac_6	87.308	65.844			0.84001	0.90803	21.742	4	1	Median	1.2321	1.0528	NaN	1	0	Median	0.69899	0.834	30.662	2	1	Median	0.81048	0.79591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43715000	23666000	20048000	11489000	4283600	7205600	20877000	13710000	7166700	11348000	5672600	5675800	0	0	0	17746	644	16811	108278;108279;108280;108281	145995;145996;145997;145998;145999	145998		232	4	
GCCAALK	1	Unmodified	778.34658	0.34657939	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	0		By MS/MS			1	0	1										1			7.934	7.698	2	0.014653	5515	160511_QHF_FH_JSI10i_1	65.897	51.485			0.36726	0.42967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36726	0.42967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147470000	111190000	36274000	0	0	0	147470000	111190000	36274000	0	0	0	0	0	0	17747	389	16812	108282	146000	146000			1	
GCCFVTFYTR	0	Unmodified	1309.5584	0.55836308	3897	Q92879;O95319	CELF1;CELF2	CUGBP Elav-like family member 1;CUGBP Elav-like family member 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	2	3	2	1	68.528	58.679	2	2.2536E-08	31141	160513_QHF_FH_JSI9Kac_6	138.4	94.261			0.83293	0.86755	13.325	8	5	Median	0.83769	0.70543	13.533	2	1	Median	0.7754	0.88929	5.415	3	2	Median	0.91588	0.86659	11.131	2	1	Median	0.88764	0.9455	NaN	1	1	Median	227620000	121620000	105990000	36668000	18441000	18226000	92583000	50969000	41614000	57902000	30694000	27208000	40464000	21520000	18944000	17748	3897	16813	108283;108284;108285;108286;108287;108288;108289;108290	146001;146002;146003;146004;146005;146006;146007;146008;146009;146010;146011	146008			11	
GCDVVVIPAGVPR	0	Unmodified	1337.7126	0.71255553	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	62.69	62.054	2	9.8999E-07	55990	160511_QHF_FH_JSI10i_1	127.76	115.92			1.2365	1.0301	21.595	5	3	Median	1.255	1.0301	NaN	1	1	Median	0.80435	0.95146	NaN	1	0	Median	0.8471	0.80948	NaN	1	0	Median	1.2603	1.3262	3.5647	2	2	Median	1297800000	661750000	636010000	107490000	47555000	59930000	259270000	153540000	105730000	327430000	171580000	155850000	603580000	289080000	314500000	17749	1504	16814	108291;108292;108293;108294;108295	146012;146013;146014;146015;146016;146017	146015			6	
GCESAVDELK	1	Unmodified	1106.4914	0.49138895	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	25.491	24.952	2	7.2524E-05	22122	160511_QHF_FH_JSI12i_1	102.55	87.395			0.59507	0.60487	109.67	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59507	0.60487	109.67	2	2	Median	62380000	37541000	24839000	0	0	0	0	0	0	0	0	0	62380000	37541000	24839000	17750	8	16815	108296;108297	146018;146019;146020	146019			3	
GCEVTPDVNISGQK	1	Unmodified	1502.7035	0.70350699	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.503	39.071	2	1.3519E-14	34975	160511_QHF_FH_JSI10i_1	158.05	140.24			0.65827	0.80128	33.416	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65827	0.80128	NaN	1	0	Median	0.61563	0.58236	NaN	1	0	Median	1.1134	1.1359	NaN	1	0	Median	187530000	105650000	81879000	0	0	0	66290000	43033000	23257000	66050000	42949000	23102000	55185000	19665000	35520000	17751	3965	16816	108298;108299;108300	146021;146022;146023;146024;146025	146025			5	
GCEVVVSGK	1	Unmodified	933.45897	0.45896661	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	2	2	17.413	13.549	2	3.0672E-06	11942	160511_QHF_FH_JSI12i_1	124.23	75.727			1.0032	1.0359	24.239	8	0	Median	1.0262	0.83651	NaN	1	0	Median	0.77476	0.93503	13.481	3	0	Plateau	0.76416	0.74722	0.66353	2	0	Median	1.2283	1.3113	7.333	2	0	Median	2200000000	1083800000	1116200000	274570000	154670000	119900000	613320000	305590000	307730000	676560000	339090000	337460000	635610000	284460000	351150000	17752	1227	16817	108301;108302;108303;108304;108305;108306;108307;108308	146026;146027;146028;146029;146030;146031;146032;146033;146034	146029			9	
GCGTVLLSGPR	0	Unmodified	1115.5757	0.5757277	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.35	1	4	2				3	4	4	2	4	6	6	41.366	35.43	2	6.2537E-13	30265	160511_QHF_FH_JSI11i_2	144.77	128.3			1.125	1.2055	27.747	16	6	Median	1.1538	0.97635	NaN	1	0	Median	0.94096	1.1156	12.565	3	1	Median	0.92583	0.9149	23.162	6	2	Median	1.2965	1.4128	22.327	6	3	Median	1743400000	734620000	1008700000	5080300	2495000	2585300	230080000	112610000	117470000	826670000	371860000	454810000	681530000	247660000	433870000	17753	2250	16818	108309;108310;108311;108312;108313;108314;108315;108316;108317;108318;108319;108320;108321;108322;108323;108324;108325;108326	146035;146036;146037;146038;146039;146040;146041;146042;146043;146044;146045;146046;146047;146048;146049;146050;146051;146052;146053;146054;146055;146056;146057;146058	146044			23	
GCGVVKFESPEVAER	1	Acetyl (K)	1704.8141	0.81412007	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						3					1		2	65.319	56.013	2	0.00099834	28995	160513_QHF_FH_JSI12Kac_3	107.85	91.593			1.787	2.0332	50.146	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2126	1.4262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6335	2.8985	NaN	1	1	Median	6965500	4183100	2782400	0	0	0	1443700	674130	769600	0	0	0	5521800	3509000	2012800	17754	1765	16819	108327;108328;108329	146059;146060;146061	146060	1781		3	
GCHLLVATPGR	0	Unmodified	1179.6183	0.61826122	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.49		1	6						5	3	4	4	1	31.756	27.889	2;3	8.678E-09	22626	160511_QHF_FH_JSI9i_3	103.26	94.297			0.99719	0.98678	17.7	11	0	Median	1.256	1.007	11.47	3	0	Median	0.82237	0.95666	9.5228	4	0	Median	0.99719	0.94538	8.6271	3	0	Median	1.4473	1.5806	NaN	1	0	Median	620590000	329790000	290800000	186100000	83946000	102160000	275840000	160410000	115440000	153090000	83551000	69543000	5548400	1882900	3665600	17755	154	16820	108330;108331;108332;108333;108334;108335;108336;108337;108338;108339;108340;108341	146062;146063;146064;146065;146066;146067;146068;146069;146070;146071;146072;146073;146074	146068			10	
GCILTLVER	0	Unmodified	1059.5747	0.57466507	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11	5.66			2					4			2	1	3	68.905	62.164	2	0.00016756	53334	160511_QHF_FH_JSI12i_3	105.14	83.005			0.93298	1.0985	13.432	5	5	Median	NaN	NaN	NaN	0	0	Median	0.93462	1.1046	0.78147	2	2	Median	0.87112	0.86267	NaN	1	1	Median	0.98411	1.0284	17.669	2	2	Median	150210000	68615000	81597000	0	0	0	31343000	14319000	17025000	3085300	1831400	1253900	115780000	52465000	63318000	17756	40	16821	108342;108343;108344;108345;108346;108347	146075;146076;146077;146078;146079;146080	146080			6	
GCITIIGGGDTATCCAK	1	Unmodified	1753.7797	0.77972517	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	50.538	47.481	2;3	9.8462E-16	42599	160511_QHF_FH_JSI11i_1	198.49	172.44			0.93684	1.0573	27.455	11	1	Median	0.75741	0.62406	6.128	2	0	Median	0.91161	1.0833	2.1384	3	0	Median	1.0379	1.0028	6.4325	3	0	Plateau	1.2822	1.3424	9.8916	3	1	Median	1070000000	542640000	527330000	205950000	129170000	76779000	255650000	124430000	131220000	295640000	135390000	160250000	312730000	153650000	159080000	17757	775	16822	108348;108349;108350;108351;108352;108353;108354;108355;108356;108357;108358	146081;146082;146083;146084;146085;146086;146087;146088;146089;146090;146091;146092;146093;146094;146095;146096;146097;146098;146099	146082			19	
GCITVIGGGDTATCCAK	1	Unmodified	1739.7641	0.76407511	866	P07205	PGK2	Phosphoglycerate kinase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			47.392	46.966	2	0.0055393	42261	160511_QHF_FH_JSI10i_1	51.092	42.363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17758	866	16823	108359	146100	146100			1	
GCLDFLR	0	Unmodified	879.42727	0.42727255	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	55.638	55.032	2	0.0010716	47583	160511_QHF_FH_JSI11i_2	124.89	86.516			1.0879	1.2239	27	8	1	Median	1.4951	1.2611	NaN	1	0	Median	1.0306	1.2391	5.9787	2	0	Median	0.89433	0.89807	10.771	3	1	Median	1.6067	1.6932	20.198	2	0	Median	935940000	463610000	472330000	92587000	37755000	54832000	203440000	104470000	98972000	436570000	228410000	208160000	203340000	92972000	110370000	17759	1282	16824	108360;108361;108362;108363;108364;108365;108366;108367	146101;146102;146103;146104;146105;146106;146107;146108;146109;146110	146108			10	
GCLELIK	1	Unmodified	831.45242	0.45242467	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.618	40.998	2	0.010482	37224	160511_QHF_FH_JSI12i_1	80.462	33.799			1.675	1.7859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.675	1.7859	NaN	1	1	Median	23257000	12341000	10916000	0	0	0	0	0	0	0	0	0	23257000	12341000	10916000	17760	1004	16825	108368	146111	146111			1	
GCLLYGPPGTGK	1	Unmodified	1218.6067	0.60669348	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.02	2	2					1				1	3	1	46.728	44.016	2	7.0357E-06	39796	160511_QHF_FH_JSI11i_1	123.75	112.92			0.65657	0.79029	40.895	5	2	Median	NaN	NaN	NaN	0	0	Median	0.65657	0.79029	NaN	1	0	Median	0.646	0.64615	45.532	3	2	Median	1.1666	1.2741	NaN	1	0	Median	345680000	167080000	178600000	0	0	0	79074000	47680000	31394000	239420000	106910000	132510000	27182000	12488000	14693000	17761	2006	16826	108369;108370;108371;108372;108373	146112;146113;146114;146115;146116	146112			3	
GCPKVTEISNVK	2	Acetyl (K)	1372.7021	0.70205043	3740	Q8TEW6	DOK4	Docking protein 4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	66.975	57.897	3	0.013435	30583	160513_QHF_FH_JSI9Kac_6	36.847	9.4376			0.92521	0.9262	4.6701	4	0	Median	1.1862	0.99635	NaN	1	0	Median	0.75241	0.89161	NaN	1	0	Median	0.98031	0.93167	NaN	1	0	Median	0.8732	0.92077	NaN	1	0	Median	581780000	291710000	290070000	170520000	76257000	94259000	204560000	110670000	93890000	130590000	63595000	66993000	76113000	41185000	34929000	17762	3740	16827	108374;108375;108376;108377	146117	146117	2925		1	
GCPPDDIENPR	0	Unmodified	1268.5455	0.54554978	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.96	21.457	2	0.012735	18822	160511_QHF_FH_JSI12i_1	45.598	30.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17763	841	16828	108378	146118	146118			1	
GCPVNTEPSGPTCEK	1	Unmodified	1631.692	0.69195602	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		20.246	20.122	2	8.3719E-05	17278	160511_QHF_FH_JSI11i_1	111.52	107.23			0.87511	0.83942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87511	0.83942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31432000	21044000	10388000	0	0	0	0	0	0	31432000	21044000	10388000	0	0	0	17764	1810	16829	108379	146119;146120	146120			2	
GCQLLVYPGAFNLTTGPAHWELLQR	0	Unmodified	2840.4432	0.44320397	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			92	86.28	3	4.5723E-53	49281	160513_QHF_FH_JSI10Kac_6	186.55	174.35			0.87243	1.0416	22.08	2	1	Median	NaN	NaN	NaN	0	0	Median	0.87243	1.0416	22.08	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	633950000	364730000	269220000	0	0	0	633950000	364730000	269220000	0	0	0	0	0	0	17765	4924	16830	108380;108381	146121;146122	146121			2	
GCQLTITFSVPNK	1	Unmodified	1463.7442	0.74424959	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.039	69.44	2	4.0318E-05	60770	160511_QHF_FH_JSI11i_2	79.659	64.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17766	2757	16831	108382	146123	146123			1	
GCSFLPDPYQK	1	Unmodified	1310.5965	0.59652272	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.278	56.788	2	6.7618E-05	51414	160511_QHF_FH_JSI11i_1	101.54	32.12			0.88337	1.0263	7.4919	3	3	Median	NaN	NaN	NaN	0	0	Median	0.8769	1.0327	NaN	1	1	Median	1.0396	1.0263	NaN	1	1	Median	0.88337	0.90428	NaN	1	1	Median	285570000	127970000	157600000	0	0	0	89693000	44627000	45066000	128900000	49670000	79228000	66980000	33676000	33304000	17767	873	16832	108383;108384;108385	146124;146125;146126	146124			3	
GCTATLGNFAK	1	Unmodified	1138.5441	0.54409322	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.82	5	4	4			2	3	2		4	5	6	5	39.758	35.604	2	1.2469E-72	30090	160511_QHF_FH_JSI12i_3	241.94	236.58			1.0223	1.0952	24.607	19	6	Median	1.1976	1.0208	23.819	3	1	Median	1.0006	1.1627	8.4649	5	2	Median	0.87992	0.85594	21.857	6	2	Median	1.4191	1.2714	16.896	5	1	Linear	5156300000	2304200000	2852100000	648470000	273330000	375150000	1311400000	634880000	676490000	1794100000	825920000	968140000	1402400000	570110000	832280000	17768	1084	16833	108386;108387;108388;108389;108390;108391;108392;108393;108394;108395;108396;108397;108398;108399;108400;108401;108402;108403;108404;108405	146127;146128;146129;146130;146131;146132;146133;146134;146135;146136;146137;146138;146139;146140;146141;146142;146143;146144;146145;146146;146147;146148;146149;146150;146151;146152;146153;146154;146155	146155			28	
GCTDNLTLTVAR	0	Unmodified	1319.6503	0.65034921	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		44.327	43.526	2	0.0002849	39200	160511_QHF_FH_JSI10i_1	75.819	65.296			0.85083	0.76729	20.373	2	2	Median	0.79741	0.66435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90783	0.88618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106120000	56050000	50072000	23070000	10589000	12481000	0	0	0	83052000	45461000	37591000	0	0	0	17769	98	16834	108406;108407;108408	146156;146157;146158	146157			3	
GCTVWLTGLSGAGK	1	Unmodified	1405.7024	0.70238478	678;315	O95340;O43252	PAPSS2;PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase;Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.02		2	1				2	1		1	1	3	1	71.899	66.271	2	5.4637E-15	34985	160513_QHF_FH_JSI11Kac_5	132.32	112.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17770	678;315	16835	108409;108410;108411;108412;108413;108414	146159;146160;146161;146162;146163;146164	146163			6	
GCVITISGR	0	Unmodified	961.5015	0.50150012	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	15	0								2				1	1	41.075	30.921	2	0.0058559	16495	160513_QHF_FH_JSI12Kac_5	60.59	44.387			0.94867	0.93048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94867	0.93048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9603600	5311600	4291900	0	0	0	0	0	0	9603600	5311600	4291900	0	0	0	17771	99	16836	108415;108416	146165;146166	146166			2	
GCVLEWVR	0	Unmodified	1017.5066	0.5065855	3669	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.705	58.574	2	0.0025229	50470	160511_QHF_FH_JSI12i_3	79.451	63.248			1.302	1.2863	38.873	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0309	0.97719	NaN	1	0	Median	1.6442	1.6933	NaN	1	0	Median	48415000	25974000	22441000	0	0	0	0	0	0	24617000	13787000	10830000	23798000	12187000	11611000	17772	3669	16837	108417;108418	146167;146168;146169	146169			3	
GCVTIAIHAK	1	Unmodified	1068.575	0.57499942	3767	Q8WUR7	C15orf40	UPF0235 protein C15orf40	yes	yes	0	0	0	0		By matching	By MS/MS		16	0									2		1	1		36.822	27.804	3	0.00023154	15480	160513_QHF_FH_JSI11Kac_6	65.157	49.528			0.9516	1.0312	0.50943	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87694	1.0349	NaN	1	0	Median	1.0326	1.0275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10174000	5169100	5005200	0	0	0	6016100	3149000	2867100	4158200	2020100	2138100	0	0	0	17773	3767	16838	108419;108420	146170	146170			1	
GCVVGTK	1	Unmodified	719.36361	0.36360966	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	8.1561	1.0505	2	0.025688	3209	160513_QHF_FH_JSI12Kac_3	58.167	5.8681			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17774	1484	16839	108421	146171	146171			1	
GCVVGTKK	2	Unmodified	847.45857	0.45857268	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		5.3797	5.1316	2	0.016421	3013	160511_QHF_FH_JSI11i_3	65.88	40.986			1.0441	1.0803	12.762	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85754	0.98712	NaN	1	1	Median	1.2712	1.1824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	174070000	90126000	83944000	0	0	0	71698000	41211000	30487000	102370000	48915000	53457000	0	0	0	17775	1484	16840	108422;108423	146172;146173	146172			2	
GCWDSIHVVEVQEK	1	Unmodified	1684.7879	0.78790532	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	57.46	56.104	2;3	1.1244E-09	48057	160511_QHF_FH_JSI12i_2	102.52	86.633			1.1965	1.2807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1965	1.2807	NaN	1	0	Median	82247000	34701000	47546000	0	0	0	0	0	0	0	0	0	82247000	34701000	47546000	17776	1607	16841	108424;108425	146174;146175;146176	146176			3	
GCYFVLDWLQK	1	Unmodified	1427.6908	0.69075746	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	92.388	82.946	2	7.8713E-08	44800	160513_QHF_FH_JSI12Kac_6	118.18	97.307			1.115	1.2271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.115	1.2271	NaN	1	1	Median	14537000	7958200	6579100	0	0	0	0	0	0	0	0	0	14537000	7958200	6579100	17777	5639	16842	108426	146177	146177			1	
GDAASSPAPAASVGSSQGGAR	0	Unmodified	1799.8398	0.83981755	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	20.137	19.76	2	3.3438E-17	16737	160511_QHF_FH_JSI9i_1	117.2	103.54			0.66252	0.70646	40.815	2	0	Median	NaN	NaN	NaN	0	0	Median	0.46581	0.52935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94231	0.94281	NaN	1	0	Median	49230000	31208000	18023000	0	0	0	24057000	16591000	7466200	0	0	0	25173000	14617000	10556000	17778	3777	16843	108427;108428;108429;108430;108431	146178;146179;146180;146181;146182;146183	146182			6	
GDAAVRDELMAAVR	0	Unmodified	1472.7406	0.7405612	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		54.443	53.826	2	8.3837E-16	47717	160511_QHF_FH_JSI11i_3	207.34	144.52			0.96259	0.95104	13.364	4	1	Median	1.2638	1.0697	NaN	1	0	Median	0.65501	0.7944	NaN	1	0	Median	0.96259	0.95104	9.1246	2	1	Median	NaN	NaN	NaN	0	0	Median	589210000	298940000	290270000	92133000	40263000	51871000	141430000	76656000	64777000	355640000	182020000	173620000	0	0	0	17779	2598	16844	108432;108433;108434;108435	146184;146185;146186	146184			1	
GDADQASNILASFGLSAR	0	Unmodified	1791.8751	0.87514042	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								3	2	1	2	96.692	96.429	2;3	4.789E-66	87413	160511_QHF_FH_JSI11i_1	228.03	195.71			0.73071	0.80432	26.48	7	1	Linear	1.0107	0.84228	23.044	2	0	Median	0.92282	1.1066	45.118	2	1	Median	0.82882	0.8037	NaN	1	0	Median	0.8858	0.9285	25.033	2	0	Median	303720000	160130000	143600000	46278000	24441000	21838000	91779000	51210000	40569000	59870000	31765000	28105000	105790000	52710000	53084000	17780	1556	16845	108436;108437;108438;108439;108440;108441;108442;108443	146187;146188;146189;146190;146191;146192;146193;146194;146195;146196;146197;146198;146199;146200;146201;146202;146203;146204	146188			18	
GDADVSVPK	1	Unmodified	886.43961	0.43961137	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.5	5.32	2				3	1					2	3	1	23.932	18.953	2	0.00018053	16240	160511_QHF_FH_JSI11i_1	86.67	43.424			0.90704	0.949	17.564	6	1	Median	NaN	NaN	NaN	0	0	Median	0.7205	0.84159	7.9196	2	1	Median	1.0942	1.0695	19.54	3	0	Plateau	1.081	1.1677	NaN	1	0	Median	237280000	137560000	99725000	0	0	0	126240000	76381000	49855000	107970000	59473000	48501000	3073900	1704300	1369500	17781	2286	16846	108444;108445;108446;108447;108448;108449	146205;146206;146207;146208;146209;146210;146211;146212;146213;146214	146206			9	
GDAEKPEEELEEDDDEELDETLSER	1	Unmodified	2920.2105	0.21052504	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			63.6	63.231	3	8.5508E-05	57231	160511_QHF_FH_JSI10i_1	53.705	47.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17782	4978	16847	108450	146215	146215			1	
GDAGEVTSLLK	1	Unmodified	1088.5714	0.57135383	2702	Q15742	NAB2	NGFI-A-binding protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				53.945	52.756	2	0.0011356	46882	160511_QHF_FH_JSI9i_1	77.379	61.717			0.50437	0.40565	NaN	1	1	Median	0.50437	0.40565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12761000	9007500	3753000	12761000	9007500	3753000	0	0	0	0	0	0	0	0	0	17783	2702	16848	108451	146216	146216			1	
GDAMIMEETGK	1	Unmodified	1180.5104	0.51040983	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.87	5	3				3	2			3	5	2	3	36.988	33.089	2	2.7443E-23	29854	160511_QHF_FH_JSI12i_1	177.06	144.22			1.0546	1.1361	38.425	11	2	Median	1.6293	1.3158	86.909	2	0	Median	0.89952	1.0856	26.369	4	1	Median	1.0905	1.0646	9.1876	2	0	Median	1.2291	1.2915	40.869	3	1	Median	6870900000	3278400000	3592400000	2096000000	935300000	1160700000	1780100000	1035500000	744590000	1524200000	754180000	770060000	1470500000	553450000	917090000	17784	5475	16849	108452;108453;108454;108455;108456;108457;108458;108459;108460;108461;108462;108463;108464	146217;146218;146219;146220;146221;146222;146223;146224;146225;146226;146227;146228;146229;146230;146231;146232;146233;146234;146235;146236;146237;146238;146239;146240	146223			24	
GDAMIMEETGK	1	Oxidation (M)	1196.5053	0.50532445	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	2	3	5	25.923	22.833	2	3.967E-06	12924	160513_QHF_FH_JSI11Kac_3	104.52	98.488			1.1259	1.122	28.526	12	8	Median	1.6888	1.4	25.296	2	2	Median	1.0484	1.2212	23.814	2	1	Median	1.908	1.8429	36.856	3	2	Median	0.90438	0.98342	11.869	5	3	Median	1103200000	524800000	578420000	254650000	122190000	132460000	136520000	53345000	83177000	228220000	89277000	138940000	483830000	259980000	223850000	17785	5475	16849	108465;108466;108467;108468;108469;108470;108471;108472;108473;108474;108475;108476	146241;146242;146243;146244;146245;146246;146247;146248;146249;146250;146251;146252;146253;146254;146255	146247		2672;2673	15	
GDAMIMEETGK	1	2 Oxidation (M)	1212.5002	0.50023907	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	2	0	By MS/MS		By MS/MS	By MS/MS	9.88	5.13	2				1	5				1		2	5	22.638	17.249	2	1.0275E-10	28989	160511_QHF_FH_JSI9i_1	144.77	139.86			1.0011	1.0852	28.104	7	1	Median	2.5875	2.0891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97016	0.93657	4.1637	2	0	Median	0.86735	0.95124	11.027	4	1	Linear	507910000	208820000	299080000	234120000	75383000	158730000	0	0	0	7769400	4127500	3641900	266020000	129310000	136710000	17786	5475	16849	108477;108478;108479;108480;108481;108482;108483;108484	146256;146257;146258;146259;146260;146261;146262;146263;146264;146265;146266;146267	146261		2672;2673	12	
GDANSEVTVYYQSGTR	0	Unmodified	1745.7857	0.78565671	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.225	37.607	2	6.0458E-40	33922	160511_QHF_FH_JSI11i_1	200.13	179.92			1.0118	0.9745	6.5253	4	0	Median	1.2335	1.0119	NaN	1	0	Median	0.7682	0.90459	NaN	1	0	Median	1.1143	1.0414	NaN	1	0	Median	0.91868	0.93844	NaN	1	0	Median	279510000	145750000	133760000	54560000	20706000	33853000	89010000	54640000	34370000	70089000	35590000	34500000	65851000	34817000	31034000	17787	387	16850	108485;108486;108487;108488	146268;146269;146270;146271;146272;146273;146274;146275	146269			8	
GDAPSPEEK	1	Acetyl (Protein N-term)	970.42436	0.42435524	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.13	4			3	1					1	2	2	3	15.834	11.948	2	0.00018763	10895	160511_QHF_FH_JSI11i_1	61.679	52.438			0.91743	1.0182	16.181	8	0	Median	1.2666	1.0215	NaN	1	0	Median	1.0219	1.1944	20.027	2	0	Median	1.0353	1.0109	16.396	2	0	Median	0.78885	0.82562	10.577	3	0	Plateau	772470000	386840000	385630000	179430000	83000000	96434000	188130000	90231000	97895000	242130000	123760000	118370000	162780000	89844000	72933000	17788	1823	16851	108489;108490;108491;108492;108493;108494;108495;108496	146276;146277;146278;146279;146280;146281;146282;146283;146284;146285;146286	146277			11	
GDARPAEIDSLWEISK	1	Unmodified	1785.8897	0.88972785	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		72.29	71.548	3	1.0336E-05	63587	160511_QHF_FH_JSI10i_2	109.42	83.863			0.76085	0.86965	9.2937	3	0	Plateau	1.1522	0.99105	NaN	1	0	Median	0.69741	0.86965	NaN	1	0	Median	0.83301	0.82794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214300000	121230000	93072000	38169000	20259000	17909000	88324000	55994000	32331000	87811000	44979000	42832000	0	0	0	17789	1687	16852	108497;108498;108499	146287;146288;146289	146289			3	
GDASKEDIDTAMK	2	Acetyl (K);Oxidation (M)	1437.6293	0.62933899	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	1	1			By MS/MS	By MS/MS	12	0					3							1	2	30.877	22.813	2	0.004705	11217	160513_QHF_FH_JSI12Kac_2	68.551	55.595			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1631200	0	1631200	0	0	0	0	0	0	0	0	0	1631200	0	1631200	17790	2770	16853	108500;108501;108502	146290;146291;146292	146291	2673	2132	3	
GDATPEGEK	1	Unmodified	902.39814	0.39814049	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	5.3799	1.6597	2	4.6657E-06	2920	160511_QHF_FH_JSI10i_1	118.5	97.195			1.4121	1.5228	16.387	6	0	Median	NaN	NaN	NaN	0	0	Median	1.4739	1.7374	7.8039	2	0	Median	1.6055	1.5718	15.335	2	0	Median	1.2182	1.2785	8.2603	2	0	Median	648710000	264040000	384670000	0	0	0	188950000	74201000	114750000	230020000	83054000	146970000	229740000	106790000	122950000	17791	5633	16854	108503;108504;108505;108506;108507;108508;108509	146293;146294;146295;146296;146297;146298;146299;146300	146296			7	
GDATVSYEDPPTAK	1	Unmodified	1449.6624	0.66235368	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	5.23	5			3	4					1	3	3	5	33.659	29.45	2;3	5.5243E-53	25783	160511_QHF_FH_JSI9i_1	224.82	201.5			1.0024	0.98348	18.803	9	2	Median	1.1138	0.91756	NaN	1	0	Median	0.78746	0.9377	6.7422	2	0	Median	0.97836	0.94146	14.66	2	0	Median	1.0648	1.1174	22.952	4	2	Median	2773100000	1424300000	1348800000	576830000	289920000	286910000	567850000	319360000	248490000	705960000	345850000	360110000	922440000	469180000	453260000	17792	2178	16855	108510;108511;108512;108513;108514;108515;108516;108517;108518;108519;108520;108521	146301;146302;146303;146304;146305;146306;146307;146308;146309;146310;146311;146312;146313;146314;146315;146316;146317;146318;146319;146320;146321;146322;146323;146324;146325	146319			25	
GDCTVLKPTLMAAVPEIMDR	1	Unmodified	2216.1003	0.10033103	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	91.828	91.807	3	1.1513E-10	81929	160511_QHF_FH_JSI11i_3	126.02	110.77			1.1772	1.1727	34.354	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9639	0.91978	NaN	1	0	Median	1.4378	1.4951	NaN	1	0	Median	122440000	49029000	73412000	0	0	0	0	0	0	82237000	30014000	52223000	40205000	19015000	21190000	17793	418	16856	108522;108523	146326;146327	146326			2	
GDDALEK	1	Unmodified	746.34465	0.34464836	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.7681	7.4205	2	0.0097221	5115	160511_QHF_FH_JSI11i_1	77.923	39.789			0.78914	0.82629	12.736	4	0	Median	1.1423	0.95213	NaN	1	0	Median	0.65182	0.77414	NaN	1	0	Median	0.73959	0.71714	NaN	1	0	Median	0.842	0.88194	NaN	1	0	Median	1491900000	756980000	734940000	212210000	102310000	109900000	450690000	242370000	208320000	372160000	181750000	190410000	456860000	230560000	226300000	17794	5697	16857	108524;108525;108526;108527	146328;146329;146330;146331;146332;146333;146334	146328			7	
GDDALEKR	1	Acetyl (K)	944.45632	0.45632407	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	21.022	13.723	2	0.0041525	9188	160513_QHF_FH_JSI11Kac_3	112.41	79.053			0.8642	1.0294	16.921	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8642	1.0294	NaN	1	0	Median	0.78277	0.77237	NaN	1	0	Median	0.94893	1.041	NaN	1	0	Median	65999000	33854000	32145000	0	0	0	22794000	11954000	10840000	21308000	11275000	10033000	21897000	10625000	11273000	17795	5697	16858	108528;108529;108530	146335;146336;146337	146335	3526		3	
GDDLLPAGTEDYIHIR	0	Unmodified	1783.8741	0.87407779	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								1	3	3	3	74.401	73.684	2;3	2.1572E-06	64597	160511_QHF_FH_JSI11i_2	121.79	111.59			1.0428	1.0697	31.512	10	5	Median	0.91102	0.77864	NaN	1	0	Median	0.58154	0.72016	35.015	3	1	Plateau	0.99709	0.99718	17.586	3	2	Plateau	0.9768	1.0859	29.474	3	2	Plateau	1071000000	576260000	494740000	153400000	100640000	52760000	280930000	161480000	119450000	331900000	170550000	161350000	304780000	143600000	161180000	17796	1522	16859	108531;108532;108533;108534;108535;108536;108537;108538;108539;108540	146338;146339;146340;146341;146342;146343;146344;146345;146346;146347;146348;146349	146346			12	
GDDLQAIKK	2	Acetyl (K)	1028.5502	0.55022446	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	43.259	34.263	2	0.00026466	19060	160513_QHF_FH_JSI12Kac_3	95.502	57.774			0.34104	0.33324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34104	0.33324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4855300	3922500	932770	0	0	0	0	0	0	3707700	2775000	932770	1147600	1147600	0	17797	882	16860	108541;108542;108543	146350;146351;146352;146353	146352	620		4	
GDDLQAIKK	2	Unmodified	986.53966	0.53965977	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		16.709	16.455	2	1.388E-05	13222	160511_QHF_FH_JSI11i_2	130.75	86.94			1.8896	1.9126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8896	1.9126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57146000	25838000	31308000	0	0	0	0	0	0	57146000	25838000	31308000	0	0	0	17798	882	16860	108544	146354	146354			1	
GDDLSTAILK	1	Unmodified	1031.5499	0.5498901	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	56.12	51.697	2	4.4415E-11	46423	160511_QHF_FH_JSI11i_1	148.52	91.242			0.94978	0.9768	5.7035	7	0	Median	1.0442	0.86081	NaN	1	0	Median	0.80986	0.95904	2.5949	2	0	Median	1.0078	0.98563	3.5455	2	0	Median	0.94101	1.0066	0.068188	2	0	Median	3018900000	1607400000	1411500000	764020000	377240000	386780000	769530000	478560000	290970000	737460000	368130000	369330000	747890000	383510000	364370000	17799	1846	16861	108545;108546;108547;108548;108549;108550;108551	146355;146356;146357;146358;146359;146360;146361;146362;146363;146364;146365;146366;146367;146368;146369;146370;146371;146372	146356			18	
GDDLSTAILKQK	2	Acetyl (K)	1329.714	0.71399532	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	68.566	59.18	2	0.0042544	30177	160513_QHF_FH_JSI11Kac_3	70.1	58.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1171700	1171700	0	0	0	0	0	0	0	747490	747490	0	424200	424200	0	17800	1846	16862	108552;108553	146373;146374	146373	1855		2	
GDDQLSGAQQWMTK	1	Unmodified	1563.6988	0.69875596	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	54.42	53.5	2	8.1785E-10	48309	160511_QHF_FH_JSI10i_1	106.26	83.571			1.3117	1.2319	35.118	2	2	Median	1.1614	0.96099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4815	1.5791	NaN	1	1	Median	73049000	39750000	33299000	33563000	18589000	14974000	0	0	0	0	0	0	39486000	21161000	18325000	17801	3875	16863	108554;108555;108556	146375;146376;146377	146376			3	
GDECGLALGR	0	Unmodified	1046.4815	0.48149296	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.989	28.426	2	0.046174	25491	160511_QHF_FH_JSI12i_1	43.982	30.076			1.8599	1.9103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8599	1.9103	NaN	1	1	Median	80871000	19439000	61432000	0	0	0	0	0	0	0	0	0	80871000	19439000	61432000	17802	1837	16864	108557	146378	146378			1	
GDEELDSLIK	1	Unmodified	1117.5503	0.55028404	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.351	56.613	2	2.5005E-09	51183	160511_QHF_FH_JSI11i_1	128.6	86.493			0.65766	0.67771	12.95	3	2	Median	0.84189	0.69278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55848	0.54797	NaN	1	0	Median	0.65766	0.67771	NaN	1	1	Median	331320000	200630000	130690000	93271000	48903000	44368000	0	0	0	138710000	85497000	53213000	99336000	66231000	33105000	17803	945	16865	108558;108559;108560;108561	146379;146380;146381;146382;146383	146380			5	
GDERPHYYGK	1	Acetyl (Protein N-term)	1262.568	0.56799978	3417	Q8IWA5	SLC44A2	Choline transporter-like protein 2	yes	yes	0	1	0	1			By MS/MS		3	0			1									1		14.376	14.376	3	0.002762	11673	160511_QHF_FH_JSI11i_3	34.087	32.971			0.87201	0.83612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87201	0.83612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55336000	25845000	29492000	0	0	0	0	0	0	55336000	25845000	29492000	0	0	0	17804	3417	16866	108562	146384	146384			1	
GDESQSQSVR	0	Unmodified	1091.4843	0.48432973	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		5.2897	-2.0311	2	0.0013044	1745	160513_QHF_FH_JSI11Kac_3	82.287	75.067			1.106	1.0519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.106	1.0519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2166000	1051700	1114200	0	0	0	0	0	0	2166000	1051700	1114200	0	0	0	17805	4094	16867	108563	146385	146385			1	
GDEVDGVDEVAK	1	Unmodified	1231.5568	0.55682598	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	30.206	29.926	2	0.0031935	26679	160511_QHF_FH_JSI11i_1	67.08	42.225			0.82054	0.87128	21.705	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6415	0.74732	NaN	1	1	Median	1.0495	1.0158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	150580000	70023000	80560000	0	0	0	72101000	31508000	40593000	78482000	38515000	39967000	0	0	0	17806	939	16868	108564;108565;108566	146386;146387;146388	146386			3	
GDEVIFGEFSWPK	1	Unmodified	1509.714	0.71399532	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.384	96.4	2	0.013366	87433	160511_QHF_FH_JSI10i_1	54.143	43.62			1.3118	1.4626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3118	1.4626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18654000	8441100	10213000	0	0	0	18654000	8441100	10213000	0	0	0	0	0	0	17807	3090	16869	108567	146389	146389			1	
GDFCIQVGR	0	Unmodified	1050.4917	0.49166372	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.79	4	4	4				2	3		3	4	5	5	47.755	44.466	2	4.2746E-07	39992	160511_QHF_FH_JSI10i_1	155.75	138.37			1.0542	1.101	19.365	16	1	Median	1.3507	1.1641	2.2847	3	1	Plateau	0.87338	1.0452	4.1922	4	0	Median	0.87199	0.85458	2.1816	4	0	Median	1.2586	1.3935	6.425	5	0	Median	3072800000	1481900000	1590900000	272250000	102020000	170230000	851510000	445820000	405690000	1006800000	533820000	472990000	942270000	400290000	541980000	17808	1209;1079	16870	108568;108569;108570;108571;108572;108573;108574;108575;108576;108577;108578;108579;108580;108581;108582;108583;108584	146390;146391;146392;146393;146394;146395;146396;146397;146398;146399;146400;146401;146402;146403;146404;146405;146406;146407;146408;146409;146410;146411;146412;146413	146400			22	
GDFDENLNYPEQK	1	Unmodified	1567.6791	0.67906638	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	49.969	45.566	2	5.1229E-177	41056	160511_QHF_FH_JSI10i_1	318.35	314.46			0.99493	0.98471	8.7829	7	0	Median	1.1104	0.90124	NaN	1	0	Median	0.86405	1.0275	6.0138	2	0	Median	0.97621	0.94842	1.5317	2	0	Median	1.053	1.1188	0.37627	2	0	Median	2011200000	978600000	1032600000	392990000	187190000	205800000	491430000	281200000	210230000	571790000	264470000	307320000	554940000	245740000	309200000	17809	5246	16871	108585;108586;108587;108588;108589;108590;108591	146414;146415;146416;146417;146418;146419;146420;146421;146422;146423;146424;146425;146426;146427;146428;146429;146430;146431;146432;146433;146434	146426			21	
GDFDVSVPK	1	Unmodified	962.47091	0.4709115	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	49.59	45.188	2	0.00026574	40820	160511_QHF_FH_JSI12i_1	83.948	73.074			1.05	1.0987	21.648	7	1	Median	0.87254	0.72507	NaN	1	0	Median	1.0074	1.1878	21.027	2	1	Median	1.1031	1.0717	12.212	2	0	Median	1.1314	1.2109	13.751	2	0	Median	979080000	501180000	477900000	162430000	81850000	80584000	308600000	158830000	149780000	269030000	129920000	139120000	239010000	130580000	108420000	17810	2286	16872	108592;108593;108594;108595;108596;108597;108598	146435;146436;146437;146438;146439;146440;146441;146442;146443;146444	146437			10	
GDFETFIK	1	Unmodified	955.4651	0.46509784	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		57.096	56.69	2	0.0045395	51184	160511_QHF_FH_JSI10i_1	75.738	63.833			0.8221	0.87704	17.697	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84794	0.99395	NaN	1	1	Median	0.79705	0.77388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	103900000	44996000	58908000	0	0	0	58150000	16128000	42021000	45754000	28868000	16886000	0	0	0	17811	5014	16873	108599;108600	146445;146446	146446			2	
GDFETIK	1	Unmodified	808.39668	0.39668393	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	25.807	23.533	2	0.0034484	20733	160511_QHF_FH_JSI10i_1	104.45	87.521			1.1244	1.1104	10.362	5	0	Median	1.4566	1.2073	NaN	1	0	Median	0.80325	0.95288	NaN	1	0	Median	1.1982	1.1752	8.0207	2	0	Median	1.048	1.1069	NaN	1	0	Median	857190000	408360000	448830000	191300000	65381000	125920000	217930000	125490000	92439000	235010000	118460000	116560000	212950000	99030000	113920000	17812	4154	16874	108601;108602;108603;108604;108605	146447;146448;146449;146450;146451;146452;146453;146454	146451			8	
GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK	1	Unmodified	3817.9111	0.91109578	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			10							7	3			90.681	89.568	4;5	5.1856E-13	73963	160511_QHF_FH_JSI9i_3	66.461	54.945			1.0982	0.9511	13.276	10	4	Median	1.1829	0.97096	10.461	7	2	Median	0.82151	0.95609	17.847	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243860000	102680000	141180000	167640000	64639000	103000000	76213000	38038000	38175000	0	0	0	0	0	0	17813	1765	16875	108606;108607;108608;108609;108610;108611;108612;108613;108614;108615	146455;146456;146457;146458;146459;146460;146461;146462;146463;146464;146465;146466	146465			11	
GDFGTQK	1	Unmodified	751.35007	0.35006808	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	7	6	4					4				1	1	4	2	8.2871	4.9856	2	0.013927	5394	160511_QHF_FH_JSI12i_1	67.032	53.824			1.2223	1.1285	13.604	7	1	Median	1.3235	1.0812	NaN	1	0	Median	0.88091	1.0326	NaN	1	0	Median	1.3113	1.2717	19.429	3	1	Median	1.1211	1.2103	9.9005	2	0	Median	1278400000	609540000	668850000	309720000	135720000	174000000	359310000	186690000	172610000	314520000	141600000	172920000	294840000	145520000	149320000	17814	147;158	16876	108616;108617;108618;108619;108620;108621;108622;108623	146467;146468;146469;146470;146471;146472;146473;146474	146469			8	
GDFILVGDLMR	0	Unmodified	1234.638	0.63799361	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	93.384	92.899	2	1.5525E-07	81588	160511_QHF_FH_JSI11i_2	147.4	135.18			1.0005	1.0118	9.0547	6	1	Median	1.1311	0.94822	18.495	2	0	Median	0.85589	1.0288	NaN	1	0	Median	1.0297	1.0118	1.4391	2	1	Median	0.86695	0.96673	NaN	1	0	Median	418730000	204770000	213960000	80848000	36827000	44021000	91084000	49394000	41690000	149880000	64518000	85358000	96922000	54029000	42893000	17815	2734	16877	108624;108625;108626;108627;108628;108629;108630	146475;146476;146477;146478;146479;146480;146481;146482;146483;146484;146485;146486;146487;146488;146489;146490;146491;146492	146485			18	
GDFLALDLGGTNFR	0	Unmodified	1494.7467	0.74669243	1785	P52789;P52790	HK2;HK3	Hexokinase-2;Hexokinase-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	2	1	1	92.258	91.746	2	3.5062E-07	81381	160511_QHF_FH_JSI10i_2	89.403	79.172			1.0451	1.1542	13.237	4	0	Median	1.5393	1.3526	NaN	1	0	Median	0.98056	1.2104	NaN	1	0	Median	1.1139	1.1007	NaN	1	0	Median	0.91136	0.99207	NaN	1	0	Median	107890000	50006000	57887000	32375000	12078000	20297000	23804000	12346000	11458000	26545000	12650000	13895000	25168000	12931000	12237000	17816	1785	16878	108631;108632;108633;108634;108635;108636	146493;146494;146495;146496;146497;146498;146499;146500	146499			7	
GDFLASLENDIK	1	Unmodified	1320.6561	0.65614609	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	91.076	90.382	2	3.3091E-06	79506	160511_QHF_FH_JSI11i_2	100.69	61.382			0.85553	0.8651	34.253	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69767	0.67901	NaN	1	1	Median	1.0491	1.1022	NaN	1	1	Median	31544000	16327000	15217000	0	0	0	0	0	0	17678000	10210000	7467900	13866000	6116800	7749400	17817	1586	16879	108637;108638;108639;108640;108641	146501;146502;146503;146504;146505	146504			5	
GDFLFSSDHLIEMATK	1	Unmodified	1809.8607	0.86073591	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	92.215	91.561	3	0.00023339	80459	160511_QHF_FH_JSI11i_2	58.98	54.589			1.0449	1.0578	7.4887	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1694	1.1153	NaN	1	0	Median	0.9337	1.0033	NaN	1	0	Median	31388000	14856000	16533000	0	0	0	0	0	0	15221000	6299700	8921600	16167000	8555800	7611200	17818	376	16880	108642;108643	146506	146506			1	
GDFPTGK	1	Unmodified	720.34425	0.34425443	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			2	1	3	1	16.362	13.837	2	0.012047	11510	160511_QHF_FH_JSI9i_1	69.998	59.182			0.97975	0.9759	41.514	7	0	Median	1.0399	0.87305	15.75	2	0	Median	0.92676	1.0832	NaN	1	0	Median	1.1378	1.1049	57.777	3	0	Median	0.88293	0.9238	NaN	1	0	Median	1533700000	793700000	740010000	466160000	236890000	229270000	386250000	194670000	191590000	368720000	181380000	187340000	312570000	180760000	131810000	17819	5542	16881	108644;108645;108646;108647;108648;108649;108650	146507;146508;146509;146510;146511;146512	146512			6	
GDFSYIGNLMTK	1	Unmodified	1344.6384	0.63838754	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								2	1	3	2	78.201	77.362	2	7.6975E-06	68066	160511_QHF_FH_JSI11i_2	124.1	111.53			0.85973	0.90447	27.516	7	7	Median	0.99124	0.85854	39.403	2	2	Median	0.49272	0.59867	NaN	1	1	Median	0.95905	0.96453	12.964	2	2	Median	0.93693	1.0586	22.249	2	2	Median	363820000	199230000	164600000	78829000	46231000	32598000	49116000	32398000	16719000	135380000	70081000	65301000	100500000	50516000	49979000	17820	4337	16882	108651;108652;108653;108654;108655;108656;108657;108658	146513;146514;146515;146516;146517;146518;146519;146520;146521;146522	146521			10	
GDFYTAHGEDALLAAR	0	Unmodified	1705.806	0.80599822	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.493	55.551	3	0.0038257	49100	160511_QHF_FH_JSI10i_2	65.225	53.433			0.76764	0.81921	16.975	4	1	Median	1.3412	1.1347	NaN	1	1	Median	0.67211	0.81016	NaN	1	0	Median	0.8122	0.82836	NaN	1	0	Median	0.72551	0.79116	NaN	1	0	Median	255990000	123550000	132440000	49613000	22019000	27594000	50747000	33144000	17603000	97831000	43919000	53911000	57803000	24469000	33334000	17821	1557	16883	108659;108660;108661;108662	146523;146524;146525;146526	146526			1	
GDGAELIWDK	1	Unmodified	1102.5295	0.52948901	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		55.102	53.925	2	3.5427E-06	48684	160511_QHF_FH_JSI11i_1	112.75	85.262			1.7527	1.4558	NaN	1	1	Median	1.7527	1.4558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150940000	65890000	85054000	150940000	65890000	85054000	0	0	0	0	0	0	0	0	0	17822	5254	16884	108663;108664	146527;146528	146527			2	
GDGEVLEEIVTK	1	Unmodified	1287.6558	0.65581174	3019	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	65.753	65.007	2	2.6911E-07	59088	160511_QHF_FH_JSI11i_1	129.82	105.6			0.84031	0.92792	28.582	7	0	Plateau	1.5644	1.3064	42.25	2	0	Median	0.75999	0.89439	NaN	1	0	Median	0.91269	0.89792	4.6485	2	0	Median	1.0868	1.1484	35.522	2	0	Median	389770000	207350000	182410000	62961000	21519000	41442000	90065000	60049000	30016000	129130000	66491000	62635000	107620000	59294000	48321000	17823	3019	16885	108665;108666;108667;108668;108669;108670;108671	146529;146530;146531;146532;146533;146534;146535;146536;146537	146529			9	
GDGPDVQELGLPNPEEVK	1	Unmodified	1891.9163	0.91633654	531	O75459	PAGE1	P antigen family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.345	72.843	2	4.419E-16	66038	160511_QHF_FH_JSI10i_1	157.75	143.49			0.96159	1.0163	34.786	4	3	Median	0.69396	0.56199	NaN	1	1	Median	0.9916	1.1729	NaN	1	0	Median	0.93249	0.88064	NaN	1	1	Median	1.0958	1.1749	NaN	1	1	Median	203780000	108700000	95076000	42312000	24727000	17585000	68143000	38198000	29945000	49287000	24637000	24649000	44037000	21140000	22897000	17824	531	16886	108672;108673;108674;108675	146538;146539;146540;146541;146542	146541			5	
GDGPICLVLAPTR	0	Unmodified	1367.7231	0.72312022	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.31	3	6	2				3	5		3	5	5	6	76.608	71.374	2	3.682E-22	63353	160511_QHF_FH_JSI12i_2	175.74	168.03			0.8898	0.93726	24.57	15	5	Median	0.99748	0.84591	14.503	2	2	Median	0.78245	0.93512	10.277	4	1	Median	0.85655	0.85557	14.435	4	0	Median	1.1428	1.2346	30.954	5	2	Median	639220000	329770000	309450000	53618000	27908000	25710000	150060000	79637000	70419000	278770000	147620000	131140000	156780000	74603000	82177000	17825	1128;3893	16887	108676;108677;108678;108679;108680;108681;108682;108683;108684;108685;108686;108687;108688;108689;108690;108691;108692;108693;108694	146543;146544;146545;146546;146547;146548;146549;146550;146551;146552;146553;146554;146555;146556;146557;146558;146559;146560;146561;146562;146563	146546			21	
GDGPVQGIINFEQK	1	Unmodified	1500.7573	0.75725712	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.75	8	3	3				2	3		5	5	3	6	70.314	66.96	2;3	4.5311E-118	61641	160511_QHF_FH_JSI12i_1	320.07	295.61			0.95553	0.96255	12.843	19	1	Median	1.1195	0.93662	7.7881	5	0	Median	0.81343	0.97603	13.124	5	0	Median	0.94633	0.92841	9.0092	3	1	Median	0.93527	0.99498	18.667	6	0	Median	10298000000	5356900000	4941500000	1954500000	909580000	1045000000	2981200000	1703600000	1277600000	2389700000	1272600000	1117100000	2973000000	1471100000	1501900000	17826	769	16888	108695;108696;108697;108698;108699;108700;108701;108702;108703;108704;108705;108706;108707;108708;108709;108710;108711;108712;108713	146564;146565;146566;146567;146568;146569;146570;146571;146572;146573;146574;146575;146576;146577;146578;146579;146580;146581;146582;146583;146584;146585;146586;146587;146588;146589;146590;146591;146592;146593;146594;146595;146596;146597;146598;146599;146600;146601;146602;146603;146604;146605;146606;146607;146608	146578			44	
GDGPWYYYETIDK	1	Unmodified	1605.6987	0.69873919	354	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	2	3	2	74.071	73.422	2	6.6517E-07	66662	160511_QHF_FH_JSI11i_1	91.961	73.825			0.75286	0.8253	18.368	6	5	Plateau	1.0234	0.81708	NaN	1	0	Median	0.68802	0.81547	NaN	1	1	Median	0.99891	1.0016	25.687	2	2	Median	0.98203	1.0396	18.679	2	2	Median	405670000	223050000	182610000	41337000	17034000	24303000	94560000	59852000	34709000	148830000	77794000	71032000	120950000	68375000	52571000	17827	354	16889	108714;108715;108716;108717;108718;108719;108720;108721	146609;146610;146611;146612;146613;146614;146615;146616;146617;146618	146610			10	
GDGVTEIR	0	Unmodified	845.4243	0.42429566	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		20.56	13.097	2	0.017984	8913	160513_QHF_FH_JSI11Kac_3	66.073	15.946			12.83	12.671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.83	12.671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88161000	1483000	86678000	0	0	0	0	0	0	88161000	1483000	86678000	0	0	0	17828	347	16890	108722	146619	146619			1	
GDGVVLVAPPLR	0	Unmodified	1191.6976	0.69755739	1999	P62310	LSM3	U6 snRNA-associated Sm-like protein LSm3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	66.828	66.06	2	1.0195E-15	60270	160511_QHF_FH_JSI12i_1	155.84	129.05			0.79634	0.85786	27.981	6	2	Median	0.80123	0.68152	38.684	2	1	Median	0.70497	0.8338	NaN	1	0	Median	0.89954	0.88261	NaN	1	0	Median	0.64938	0.69117	41.67	2	1	Median	1049600000	579310000	470250000	291490000	152580000	138910000	191850000	106650000	85204000	251540000	131480000	120060000	314680000	188600000	126080000	17829	1999	16891	108723;108724;108725;108726;108727;108728;108729	146620;146621;146622;146623;146624;146625;146626;146627;146628;146629;146630	146624			11	
GDGVVLVAPPLRVG	0	Unmodified	1347.7874	0.78743503	1999	P62310	LSM3	U6 snRNA-associated Sm-like protein LSm3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	79.821	79.192	2	0.00035769	69975	160511_QHF_FH_JSI9i_2	78.655	68.702			1.2674	1.3208	9.384	7	0	Median	1.6201	1.3407	NaN	1	0	Median	1.1428	1.3236	10.266	2	0	Median	1.4859	1.406	8.8445	2	0	Median	1.1586	1.2153	11.239	2	0	Median	172960000	73806000	99157000	23912000	9619900	14292000	51455000	21704000	29751000	38947000	18301000	20646000	58649000	24182000	34467000	17830	1999	16892	108730;108731;108732;108733;108734;108735;108736;108737	146631;146632;146633;146634;146635;146636;146637;146638;146639	146637			9	
GDHAGVLK	1	Unmodified	795.4239	0.42390173	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.45		4	4					3	3	3	3	4	4	7.4873	3.6091	2	6.6476E-05	4225	160511_QHF_FH_JSI11i_3	133.79	98.542			0.88132	0.92161	14.114	14	0	Median	1.159	0.94555	12.959	3	0	Plateau	0.78257	0.95134	20.178	3	0	Median	0.87268	1.0028	12.635	4	0	Linear	0.87965	0.97668	11.43	4	0	Median	3874100000	2033200000	1841000000	764500000	368950000	395550000	842770000	488410000	354360000	1091700000	575420000	516250000	1175200000	600390000	574810000	17831	2751	16893	108738;108739;108740;108741;108742;108743;108744;108745;108746;108747;108748;108749;108750;108751	146640;146641;146642;146643;146644;146645;146646;146647;146648;146649;146650;146651;146652;146653;146654;146655	146640			16	
GDHAWSFLK	1	Acetyl (Protein N-term)	1101.5243	0.52434406	1013	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	5.2	5.42		2	2						1	1		1	3	67.155	64.522	2	4.6168E-06	56471	160511_QHF_FH_JSI11i_2	51.193	51.193			1.0412	1.0879	55.867	5	2	Median	1.0412	0.87056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0638	1.0879	NaN	1	0	Median	1.0272	1.1347	69.664	3	1	Median	524740000	246280000	278470000	15949000	7350900	8597900	0	0	0	278930000	124000000	154930000	229870000	114930000	114940000	17832	1013	16894	108752;108753;108754;108755;108756	146656;146657;146658;146659;146660;146661	146659			6	
GDHLFALLSSETHQEDPITYK	1	Unmodified	2400.1598	0.1597547	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	79.016	78.889	3;4	5.0132E-18	70470	160511_QHF_FH_JSI11i_3	144.01	124.46			1.0796	1.059	10.342	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2272	1.1361	7.7458	2	0	Median	0.96779	0.98648	7.8411	2	1	Median	190910000	94039000	96866000	0	0	0	0	0	0	82512000	43033000	39478000	108390000	51006000	57388000	17833	4856	16895	108757;108758;108759;108760	146662;146663;146664;146665;146666;146667	146663			6	
GDHPIMMGFEPLVNQR	0	Unmodified	1839.876	0.87600882	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.706	72.559	3	0.0002563	64670	160511_QHF_FH_JSI11i_3	57.288	51.832			1.1308	1.1096	4.4495	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1235	1.0752	NaN	1	0	Median	1.1382	1.1451	NaN	1	1	Median	78410000	35493000	42917000	0	0	0	0	0	0	42384000	19368000	23016000	36026000	16125000	19901000	17834	3001	16896	108761;108762	146668;146669	146668			2	
GDHVIGIVTAK	1	Unmodified	1108.6241	0.6240581	4928	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	1	3	1	32.572	32.102	2	0.0010908	27034	160511_QHF_FH_JSI12i_3	66.19	59.13			0.72134	1.2334	29.161	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.63681	0.7732	NaN	1	1	Median	0.72134	0.72633	NaN	1	1	Median	1.2298	1.2382	NaN	1	0	Median	77581000	44593000	32988000	0	0	0	23017000	14819000	8197900	18671000	12137000	6534200	35893000	17637000	18256000	17835	4928	16897	108763;108764;108765;108766;108767;108768	146670;146671;146672;146673;146674;146675;146676;146677	146677			8	
GDHWTTR	0	Unmodified	871.39366	0.39366423	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	6.4264	6.4753	2;3	0.0083718	4058	160511_QHF_FH_JSI12i_3	83.753	68.971			1.0091	0.99727	8.4267	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1266	1.054	4.4841	2	0	Median	0.91968	0.93139	6.3248	2	0	Median	805090000	394950000	410140000	0	0	0	0	0	0	370000000	179170000	190830000	435090000	215770000	219310000	17836	570	16898	108769;108770;108771;108772	146678;146679;146680;146681	146681			4	
GDIDHVK	1	Unmodified	782.39227	0.39226725	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.55		3	1				2			1	1	2	2	7.6619	4.834	2	0.0034852	4410	160511_QHF_FH_JSI11i_2	104.21	85.403			1.0183	0.99385	14.17	6	1	Median	1.2288	0.99482	NaN	1	0	Median	0.81687	0.99288	NaN	1	0	Median	1.2641	1.2627	9.0769	2	1	Median	0.86155	0.95368	1.6313	2	0	Median	945300000	468070000	477230000	64782000	31538000	33244000	253680000	128690000	124990000	327910000	162310000	165600000	298930000	145530000	153400000	17837	1544	16899	108773;108774;108775;108776;108777;108778	146682;146683;146684;146685;146686;146687;146688;146689	146687			8	
GDIFLVR	0	Unmodified	818.46504	0.46503826	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.58	2	4	2				2	4	3	3	6	4	4	58.382	52.779	2	1.8676E-33	27830	160513_QHF_FH_JSI9Kac_5	193.7	40.027			0.94817	1.0104	14.673	16	0	Median	1.0375	0.85909	14.431	3	0	Median	0.907	1.0849	12.985	5	0	Median	0.97469	0.9677	11.874	4	0	Median	0.92762	0.99604	11.403	4	0	Median	2837900000	1387200000	1450700000	482480000	224930000	257550000	717250000	375940000	341320000	972420000	471120000	501300000	665720000	315200000	350520000	17838	1846	16900	108779;108780;108781;108782;108783;108784;108785;108786;108787;108788;108789;108790;108791;108792;108793;108794;108795	146690;146691;146692;146693;146694;146695;146696;146697;146698;146699;146700;146701;146702;146703;146704;146705;146706;146707;146708;146709;146710;146711;146712;146713;146714;146715;146716	146696			27	
GDIIGVQGNPGK	1	Unmodified	1153.6091	0.60913632	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	35.857	31.695	2	1.3369E-05	28448	160511_QHF_FH_JSI12i_1	117.7	104.32			1.0566	1.1054	24.829	7	5	Median	1.4186	1.1733	NaN	1	1	Median	0.68501	0.8085	46.13	2	2	Median	0.99022	0.96192	9.7462	2	1	Median	1.059	1.1286	2.9362	2	1	Median	885630000	470300000	415340000	190220000	87301000	102920000	236290000	127330000	108960000	218560000	112740000	105820000	240560000	142920000	97636000	17839	2614	16901	108796;108797;108798;108799;108800;108801;108802	146717;146718;146719;146720;146721;146722	146718			6	
GDIIQLQR	0	Unmodified	941.52943	0.52942943	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	39.112	38.288	2	0.0019818	34321	160511_QHF_FH_JSI10i_1	81.191	41.544			0.52094	0.53699	2.0248	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54489	0.52936	NaN	1	1	Median	0.49805	0.54474	NaN	1	1	Median	114230000	74060000	40171000	0	0	0	0	0	0	52352000	31410000	20942000	61878000	42649000	19229000	17840	878	16902	108803;108804;108805	146723;146724;146725	146725			3	
GDILVVATGQPEMVK	1	Unmodified	1555.828	0.82797922	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	69.518	69.001	2;3	1.8518E-06	62877	160511_QHF_FH_JSI12i_1	130.56	118.4			1.0355	0.95799	15.899	5	2	Median	1.0491	0.85349	NaN	1	0	Median	0.7963	0.95799	NaN	1	0	Median	1.0425	1.0047	27.317	2	2	Median	1.0355	1.058	NaN	1	0	Median	250410000	130660000	119750000	38607000	17057000	21549000	64852000	38796000	26056000	80494000	41043000	39451000	66455000	33766000	32689000	17841	1004	16903	108806;108807;108808;108809;108810	146726;146727;146728;146729;146730;146731;146732;146733	146729			8	
GDINILLIGDPSVAK	1	Unmodified	1523.8559	0.85590853	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	89.974	89.548	2;3	9.8184E-05	81559	160511_QHF_FH_JSI12i_1	120.14	105.98			0.91958	0.8731	19.511	8	0	Median	1.3358	1.0829	30.393	2	0	Median	0.64672	0.75834	2.8938	2	0	Median	0.91084	0.8837	11.761	2	0	Median	0.94884	0.97088	15.07	2	0	Median	316970000	164400000	152570000	47124000	21992000	25133000	110940000	63309000	47635000	69262000	36055000	33207000	89642000	43042000	46600000	17842	1254	16904	108811;108812;108813;108814;108815;108816;108817;108818	146734;146735;146736;146737;146738;146739;146740;146741;146742;146743;146744;146745;146746;146747;146748;146749;146750	146739			17	
GDINPNIPYPTR	0	Unmodified	1355.6834	0.68336389	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.318	50.646	2	6.9248E-78	45772	160511_QHF_FH_JSI11i_1	240.1	182.24			1.0044	0.98999	11.645	5	2	Median	1.0133	0.83992	NaN	1	0	Median	0.76561	0.9005	NaN	1	0	Median	1.0044	0.98999	NaN	1	0	Median	1.0289	1.0801	6.7033	2	2	Median	837390000	441310000	396080000	160520000	84747000	75770000	214350000	123430000	90922000	175870000	87097000	88769000	286660000	146040000	140620000	17843	1704	16905	108819;108820;108821;108822;108823	146751;146752;146753;146754;146755	146752			5	
GDIQPWLHSGSNSLLSK	1	Unmodified	1837.9323	0.93226137	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		2	2								1		3	66.165	65.536	2;3	3.5922E-06	56517	160511_QHF_FH_JSI12i_3	101.92	85.239			0.52711	0.54962	53.631	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52711	0.54962	53.631	2	2	Median	200830000	109510000	91320000	0	0	0	0	0	0	0	0	0	200830000	109510000	91320000	17844	4794	16906	108824;108825;108826;108827	146756;146757;146758;146759	146758			4	
GDISISGPK	1	Unmodified	872.46035	0.46034682	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	30.066	26.027	2	3.6579E-05	22885	160511_QHF_FH_JSI10i_1	99.442	82.515			0.99124	0.96367	11.904	7	0	Median	0.9693	0.78385	NaN	1	0	Median	0.76392	0.9155	7.2517	2	0	Median	0.99616	0.9637	1.6069	2	0	Median	1.0069	1.0914	3.3158	2	0	Median	1050600000	555900000	494650000	231360000	127250000	104110000	276310000	158190000	118120000	267700000	133410000	134290000	275180000	137040000	138130000	17845	2286	16907	108828;108829;108830;108831;108832;108833;108834	146760;146761;146762;146763;146764;146765;146766;146767;146768;146769;146770;146771	146766			11	
GDITPLMAASSGGYLDIVK	1	Unmodified	1906.971	0.97101464	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	98.456	98.342	2;3	7.0704E-05	89394	160511_QHF_FH_JSI11i_1	58.672	48.615			1.275	1.4806	58.011	3	2	Median	NaN	NaN	NaN	0	0	Median	1.275	1.4806	NaN	1	1	Median	0.69981	0.67992	NaN	1	0	Median	2.1363	2.1139	NaN	1	1	Median	40552000	18790000	21762000	0	0	0	14466000	8079600	6386800	13433000	7992400	5440400	12653000	2717600	9935000	17846	3434	16908	108835;108836;108837;108838;108839	146772;146773;146774;146775;146776;146777	146772			6	
GDIVDIK	1	Unmodified	758.41742	0.41741937	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	6					3	3			1	3	4	4	35.331	30.374	2	0.004105	28278	160511_QHF_FH_JSI11i_1	100.19	27.149			1.094	1.1691	60.494	12	1	Median	1.5317	1.2495	NaN	1	1	Median	0.83566	0.99336	10.214	3	0	Plateau	1.2045	1.1713	107.33	4	0	Median	1.1476	1.2306	27.108	4	0	Median	1629400000	751320000	878070000	381690000	173910000	207780000	422540000	206400000	216130000	404690000	174140000	230560000	420470000	196870000	223600000	17847	1591	16909	108840;108841;108842;108843;108844;108845;108846;108847;108848;108849;108850;108851	146778;146779;146780;146781;146782;146783;146784;146785;146786;146787;146788;146789;146790;146791;146792;146793;146794;146795;146796;146797;146798	146781			21	
GDIVFNIYHSK	1	Unmodified	1291.6561	0.65608651	3829	Q92503	SEC14L1	SEC14-like protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			62.314	53.949	3	0.0036408	29727	160513_QHF_FH_JSI10Kac_6	36.938	27.984			0.58463	0.69357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58463	0.69357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25211000	16478000	8733200	0	0	0	25211000	16478000	8733200	0	0	0	0	0	0	17848	3829	16910	108852	146799	146799			1	
GDIVYIHK	1	Unmodified	943.51272	0.51271674	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.5	6.5		1						1				1	1	31.479	25.925	3	0.019041	21890	160511_QHF_FH_JSI12i_2	33.263	17.381			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17849	422	16911	108853;108854	146800;146801	146800			2	
GDIVYIYK	1	Unmodified	969.51713	0.51713341	4509	Q9BX66	SORBS1	Sorbin and SH3 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							3				1	2		59.072	48.171	2	0.0058496	26551	160513_QHF_FH_JSI10Kac_4	67.032	54.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17850	4509	16912	108855;108856;108857	146802;146803;146804	146802			3	
GDIYFCTGYDPPMK	1	Unmodified	1662.7058	0.70581517	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.326	67.017	2	0.014943	60743	160511_QHF_FH_JSI10i_1	70.977	61.655			0.48096	0.53842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48096	0.53842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20279000	13104000	7175700	0	0	0	20279000	13104000	7175700	0	0	0	0	0	0	17851	4965	16913	108858	146805	146805			0	
GDKAQIEK	2	Acetyl (K)	929.48181	0.48181054	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3				1	2	2	1	18.352	9.3669	2	0.00014573	8017	160513_QHF_FH_JSI11Kac_3	125.48	57.487			0.83379	0.84545	24.468	6	0	Median	0.93541	0.76291	NaN	1	0	Median	0.83379	0.99355	2.0569	2	0	Median	0.60454	0.59362	1.507	2	0	Median	0.90779	0.93692	NaN	1	0	Median	192520000	103880000	88642000	84098000	40714000	43385000	49529000	27545000	21984000	46072000	28689000	17383000	12823000	6932300	5890700	17852	980	16914	108859;108860;108861;108862;108863;108864	146806;146807;146808;146809;146810;146811;146812;146813;146814;146815;146816	146809	756		11	
GDKEEVAYEER	1	Unmodified	1323.5943	0.59427411	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									2	2	1	12.322	11.949	2	0.00016489	9176	160511_QHF_FH_JSI11i_2	100.93	74.417			0.96559	0.99665	9.1839	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84432	1.0205	3.351	2	1	Median	0.96911	0.9452	4.7967	2	0	Median	1.0226	1.1697	NaN	1	0	Median	242940000	120190000	122750000	0	0	0	65604000	30788000	34816000	123690000	63634000	60061000	53641000	25771000	27870000	17853	4965	16915	108865;108866;108867;108868;108869	146817;146818;146819;146820;146821;146822;146823	146821			7	
GDKPIWEQIGSSFIQHYYQLFDNDR	1	Acetyl (Protein N-term)	3097.457	0.45699936	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	1	0	1				By MS/MS	16	0									1				1	99.273	89.831	3	6.3094E-15	49410	160513_QHF_FH_JSI12Kac_6	155.73	143.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22094000	0	22094000	0	0	0	0	0	0	0	0	0	22094000	0	22094000	17854	1974	16916	108870	146824	146824			1	
GDKVDILYNNIK	2	Unmodified	1390.7456	0.7456298	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	49.204	48.966	2;3	0.00010881	41861	160511_QHF_FH_JSI12i_3	129.84	107.2			1.1388	1.1475	11.5	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1388	1.1475	11.5	2	0	Median	135970000	60517000	75455000	0	0	0	0	0	0	0	0	0	135970000	60517000	75455000	17855	5658	16917	108871;108872;108873	146825;146826;146827;146828	146826			4	
GDLAPLWK	1	Unmodified	898.49125	0.49125301	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	58.606	57.676	2	0.0022989	52291	160511_QHF_FH_JSI11i_1	79.116	55.144			1.0704	1.2137	8.8818	4	1	Linear	1.1039	0.94121	NaN	1	0	Median	0.94319	1.1254	NaN	1	0	Median	1.0722	1.0591	NaN	1	1	Median	1.0685	1.1456	NaN	1	0	Median	144870000	74798000	70072000	21489000	9302000	12187000	26354000	14636000	11718000	54643000	29131000	25512000	42385000	21730000	20655000	17856	3904	16918	108874;108875;108876;108877;108878;108879	146829;146830;146831;146832	146829			4	
GDLDASVPSMK	1	Unmodified	1118.5278	0.52777445	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	42.63	41.976	2	1.452E-05	38188	160511_QHF_FH_JSI12i_1	105.98	89.502			1.044	0.98356	9.6432	4	0	Median	1.1776	0.98046	NaN	1	0	Median	0.77227	0.90322	NaN	1	0	Median	1.0153	0.98667	NaN	1	0	Median	1.0734	1.1391	NaN	1	0	Median	895130000	426160000	468970000	163960000	76210000	87746000	212120000	122110000	90012000	268230000	120370000	147860000	250820000	107470000	143350000	17857	2286	16919	108880;108881;108882;108883;108884	146833;146834;146835;146836;146837;146838;146839	146836			6	
GDLDIAGPNLEGDFK	1	Unmodified	1559.7468	0.74675201	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	74.386	73.788	2	1.4113E-09	67113	160511_QHF_FH_JSI12i_1	142.08	114.75			0.99613	1.0121	3.0496	3	0	Plateau	1.1888	0.98368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.0455	NaN	1	0	Median	0.99613	1.0121	NaN	1	0	Median	394260000	189010000	205240000	99121000	39433000	59688000	0	0	0	118010000	63278000	54733000	177130000	86304000	90823000	17858	2286	16920	108885;108886;108887	146840;146841;146842;146843;146844;146845	146842			6	
GDLENAFLNLVQCIQNK	1	Unmodified	1974.9833	0.98331066	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	4.97		9	7						3	2	4	7	6	101.79	100.68	2;3	5.1901E-280	90007	160511_QHF_FH_JSI11i_2	404.64	369.89			0.93959	0.92677	20.534	18	4	Median	0.9562	0.81405	2.6486	2	0	Median	0.74103	0.91706	15.916	4	0	Median	0.77661	0.79758	15.454	6	2	Median	1.1085	1.1437	5.7798	6	2	Median	21192000000	10541000000	10651000000	524800000	269950000	254850000	1515400000	844770000	670630000	5111100000	2658600000	2452500000	14040000000	6767600000	7272800000	17859	870	16921	108888;108889;108890;108891;108892;108893;108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906	146846;146847;146848;146849;146850;146851;146852;146853;146854;146855;146856;146857;146858;146859;146860;146861;146862;146863;146864;146865;146866;146867;146868;146869;146870;146871	146864			26	
GDLENAFLNLVQCIQNKPLYFADR	1	Unmodified	2837.417	0.4170488	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	98.101	89.909	3	3.1799E-93	48714	160513_QHF_FH_JSI12Kac_6	226.14	210.04			1.4668	1.4105	33.551	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78489	0.92081	NaN	1	1	Median	1.4668	1.4105	NaN	1	0	Median	1.6596	1.785	NaN	1	0	Median	502020000	231960000	270060000	0	0	0	240610000	104130000	136480000	119970000	62576000	57395000	141430000	65257000	76178000	17860	870	16922	108907;108908;108909	146872;146873	146872			2	
GDLETLQPGDDVEFTIK	1	Unmodified	1875.9102	0.91018852	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	79.623	79.164	2;3	3.8977E-40	71728	160511_QHF_FH_JSI10i_1	198.49	175.57			0.82838	0.87756	31.79	6	1	Plateau	0.86454	0.71358	NaN	1	0	Median	0.77618	0.90311	NaN	1	0	Median	0.90852	0.86327	15.087	2	0	Median	1.1837	1.2191	50.546	2	1	Median	394310000	210060000	184250000	43939000	25340000	18599000	121590000	65902000	55685000	83918000	42964000	40954000	144860000	75854000	69009000	17861	543	16923	108910;108911;108912;108913;108914;108915	146874;146875;146876;146877;146878;146879;146880;146881;146882;146883	146880			10	
GDLFAATFLIK	1	Unmodified	1194.6649	0.66486028	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	94.918	91.322	2	0.00075207	45051	160513_QHF_FH_JSI9Kac_6	83.862	61.625			0.97717	1.0036	43.25	7	1	Median	0.97717	0.84831	NaN	1	0	Median	0.88484	1.0478	41.026	2	1	Median	1.2261	1.2087	36.114	2	0	Median	1.4744	1.6343	68.964	2	0	Median	130310000	69533000	60778000	6219300	2984100	3235200	45048000	23355000	21694000	51228000	30272000	20956000	27815000	12922000	14893000	17862	5222	16924	108916;108917;108918;108919;108920;108921;108922;108923	146884;146885;146886;146887;146888;146889	146887			4	
GDLGIEIPAEK	1	Unmodified	1140.6027	0.60265396	1055	P14618	PKM	Pyruvate kinase PKM	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	5.94	9	2	4		3	8	3	4		5	10	8	10	62.655	56.663	2;3	1.0211E-35	30427	160513_QHF_FH_JSI12Kac_3	197.06	127.25			1.0405	0.99359	29.063	29	5	Median	1.1835	1.1031	16.399	4	0	Linear	0.82998	0.97597	27.282	8	4	Median	1.0401	0.97152	31.678	7	1	Median	1.1196	1.1906	29.195	10	0	Median	33802000000	16177000000	17626000000	8045500000	3298700000	4746800000	8725500000	4652700000	4072700000	8665600000	3877700000	4787900000	8366000000	4347600000	4018300000	17863	1055	16925	108924;108925;108926;108927;108928;108929;108930;108931;108932;108933;108934;108935;108936;108937;108938;108939;108940;108941;108942;108943;108944;108945;108946;108947;108948;108949;108950;108951;108952;108953;108954;108955;108956	146890;146891;146892;146893;146894;146895;146896;146897;146898;146899;146900;146901;146902;146903;146904;146905;146906;146907;146908;146909;146910;146911;146912;146913;146914;146915;146916;146917;146918;146919;146920;146921;146922;146923;146924;146925;146926;146927;146928;146929;146930;146931;146932;146933;146934;146935;146936;146937;146938;146939;146940;146941;146942;146943;146944;146945;146946;146947;146948;146949	146935			58	
GDLITEPFLPK	1	Unmodified	1228.6703	0.67033959	2091	P78381	SLC35A2	UDP-galactose translocator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		77.134	76.649	2	0.00018322	69389	160511_QHF_FH_JSI10i_1	92.062	74.198			1.0693	1.0456	11.032	5	5	Median	1.4045	1.1213	0.37913	2	2	Median	0.76132	0.90382	3.2353	2	2	Median	1.0693	1.0456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	190280000	100010000	90265000	44594000	19772000	24823000	89571000	48522000	41048000	56111000	31718000	24393000	0	0	0	17864	2091	16926	108957;108958;108959;108960;108961	146950;146951;146952;146953;146954	146951			5	
GDLLEVK	1	Unmodified	772.43307	0.43306943	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	35.561	35.138	2	0.010478	31003	160511_QHF_FH_JSI9i_1	65.252	43.121			1.201	1.1876	5.0267	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1723	1.1461	NaN	1	0	Median	1.2304	1.2306	NaN	1	0	Median	68907000	30141000	38765000	0	0	0	0	0	0	43744000	18058000	25686000	25163000	12084000	13079000	17865	2592	16927	108962;108963;108964	146955;146956	146956			2	
GDLLFLTNR	0	Unmodified	1047.5713	0.57129425	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		5.25	5.63		3						1		1	2	1		70.906	67.722	2	0.00072092	60069	160511_QHF_FH_JSI9i_2	75.378	48.124			0.84834	0.95642	10.488	4	2	Median	1.1763	1.0021	NaN	1	0	Median	0.71486	0.86591	12.654	2	2	Median	0.94034	0.96597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	304190000	159230000	144960000	60230000	27246000	32984000	86097000	51060000	35037000	157860000	80920000	76942000	0	0	0	17866	2067	16928	108965;108966;108967;108968	146957;146958;146959	146957			3	
GDLLMNLFENDR	0	Oxidation (M)	1451.6715	0.67147858	5813				yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	5									1	2	1	1	68.814	68.303	2	0.02016	61982	160511_QHF_FH_JSI10i_1	44.318	37.785	+		0.93181	1.0139	5.8958	5	0	Median	1.1259	0.92008	NaN	1	0	Median	0.86865	1.0139	0	2	0	Median	1.1154	1.0845	NaN	1	0	Median	0.93181	0.99171	NaN	1	0	Median	621920000	326670000	295250000	137460000	67450000	70009000	279860000	154140000	125720000	99027000	52224000	46802000	105570000	52855000	52720000	17867	5813	16929	108969;108970;108971;108972;108973	146960	146960		2757	1	
GDLNDCFIPCTPK	1	Unmodified	1535.6748	0.6748494	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		59.93	59.538	2	0.0005976	53812	160511_QHF_FH_JSI10i_1	86.772	80.239			1.7077	1.9825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7077	1.9825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27588000	11100000	16488000	0	0	0	27588000	11100000	16488000	0	0	0	0	0	0	17868	1004	16930	108974;108975	146961;146962	146962			2	
GDLNYRK	1	Unmodified	864.44537	0.44536545	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	7.7646	7.8623	3	0.021296	5351	160511_QHF_FH_JSI12i_3	38.792	24.016			0.78147	0.78415	54.226	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78147	0.78415	54.226	2	2	Median	457110000	217910000	239200000	0	0	0	0	0	0	0	0	0	457110000	217910000	239200000	17869	4800	16931	108976;108977	146963;146964	146963			2	
GDLPFVVPR	0	Unmodified	998.55492	0.5549159	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.18	4	4	2				3	3		2	5	4	5	70.619	66.166	2	2.8744E-06	58143	160511_QHF_FH_JSI11i_2	130.22	116.06			0.9886	1.0464	10.293	16	0	Median	1.274	1.0648	4.0338	2	0	Median	0.86286	1.0012	16.312	5	0	Median	1.0202	1.0363	2.7065	4	0	Linear	0.96393	1.0207	10.955	5	0	Median	1611400000	816660000	794780000	264760000	112160000	152600000	374370000	207130000	167250000	559390000	272770000	286610000	412910000	224600000	188320000	17870	1436	16932	108978;108979;108980;108981;108982;108983;108984;108985;108986;108987;108988;108989;108990;108991;108992;108993	146965;146966;146967;146968;146969;146970;146971;146972;146973;146974;146975;146976;146977;146978;146979;146980;146981;146982;146983;146984;146985;146986;146987;146988;146989;146990;146991;146992	146985			27	
GDLPQVEITK	1	Unmodified	1098.5921	0.59208927	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.691	48.474	2	0.0234	43099	160511_QHF_FH_JSI9i_1	60.717	50.936			0.65704	0.55882	NaN	1	0	Median	0.65704	0.55882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28968000	18594000	10373000	28968000	18594000	10373000	0	0	0	0	0	0	0	0	0	17871	2989	16933	108994	146993	146993			0	
GDLPREPLVATNLPGR	0	Unmodified	1703.9319	0.93186744	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		58.603	57.511	3	6.4168E-22	50577	160511_QHF_FH_JSI9i_2	146.16	120.29			0.90067	1.0054	14.584	5	0	Median	1.4597	1.2132	3.8695	2	0	Median	0.82715	0.97457	4.4075	2	0	Median	0.90067	0.88564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	623370000	296630000	326740000	290070000	125940000	164130000	283290000	143610000	139680000	50015000	27077000	22938000	0	0	0	17872	1526	16934	108995;108996;108997;108998;108999	146994;146995;146996;146997;146998;146999;147000;147001	146998			8	
GDLSGHFEHLMVALVTPPAVFDAK	1	Unmodified	2550.2941	0.29408012	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	94.502	86.128	4	1.3219E-05	48285	160513_QHF_FH_JSI9Kac_6	69.133	61.511			0.89914	0.92062	8.3368	4	0	Median	1.0866	0.93625	NaN	1	0	Median	0.66275	0.78548	NaN	1	0	Median	0.92697	0.90767	NaN	1	0	Median	0.87214	0.93375	NaN	1	0	Median	333790000	175130000	158660000	108660000	50930000	57733000	71993000	36928000	35064000	88705000	54588000	34117000	64424000	32681000	31743000	17873	1018	16935	109000;109001;109002;109003	147002;147003;147004;147005	147003			4	
GDLSLRPEDGVWALR	0	Unmodified	1682.874	0.87401821	2322	Q12899	TRIM26	Tripartite motif-containing protein 26	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	73.602	73.457	3	0.0024863	63773	160511_QHF_FH_JSI12i_3	48.351	43.96			1.026	0.97944	14.81	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1727	1.0876	NaN	1	0	Median	0.8976	0.88206	NaN	1	0	Median	71719000	33944000	37775000	0	0	0	0	0	0	41167000	19414000	21753000	30552000	14530000	16022000	17874	2322	16936	109004;109005;109006	147006;147007;147008	147008			3	
GDLSSIR	0	Unmodified	746.39227	0.39226725	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.14	4	1				3	3			2	2	3	4	20.699	15.204	2	0.0015363	14847	160511_QHF_FH_JSI12i_1	119.57	65.041			0.88174	0.95549	17.32	11	1	Median	1.483	1.1758	4.4141	2	1	Median	0.95639	1.1462	3.758	2	0	Median	0.88174	0.85316	10.677	3	0	Plateau	0.83692	0.91403	7.7147	4	0	Median	2974900000	1463400000	1511400000	666020000	249710000	416310000	700360000	350130000	350230000	602920000	349400000	253510000	1005600000	514190000	491390000	17875	1650	16937	109007;109008;109009;109010;109011;109012;109013;109014;109015;109016;109017	147009;147010;147011;147012;147013;147014;147015;147016;147017;147018;147019;147020;147021	147013			13	
GDLTIANLGTSEGR	0	Unmodified	1402.7052	0.70522155	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	53.914	53.337	2	5.226E-05	48062	160511_QHF_FH_JSI10i_1	117.2	96.896			0.84116	0.88525	22.603	3	3	Median	NaN	NaN	NaN	0	0	Median	0.71768	0.82114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0085	1.0537	24.639	2	2	Median	337390000	161280000	176110000	0	0	0	117510000	65055000	52452000	0	0	0	219890000	96226000	123660000	17876	907	16938	109018;109019;109020	147022;147023;147024	147024			3	
GDMANNSVAYSGVK	1	Acetyl (Protein N-term)	1453.6507	0.65074314	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	45.779	45.019	2	4.3555E-10	40003	160511_QHF_FH_JSI9i_1	94.363	92.554			1.3979	1.3312	10.837	3	0	Median	1.7928	1.4528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3979	1.3312	NaN	1	0	Median	1.1135	1.1712	NaN	1	0	Median	148960000	66272000	82692000	51583000	20740000	30843000	0	0	0	46931000	19971000	26960000	50449000	25561000	24889000	17877	1168	16939	109021;109022;109023	147025;147026	147026			2	
GDMDISLPK	1	Unmodified	974.47428	0.47428232	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.582	50.908	2	1.6091E-06	46200	160511_QHF_FH_JSI12i_1	131.22	109.69			0.93578	0.94666	11.826	4	0	Median	0.9732	0.81043	NaN	1	0	Median	0.79861	0.95183	NaN	1	0	Median	1.116	1.0821	NaN	1	0	Median	0.8998	0.94153	NaN	1	0	Median	623410000	296400000	327010000	165160000	72926000	92235000	132420000	65495000	66930000	162790000	77954000	84838000	163030000	80022000	83009000	17878	2286	16940	109024;109025;109026;109027	147027;147028;147029;147030;147031;147032;147033;147034	147030			8	
GDMDISVPK	1	Unmodified	960.45863	0.45863226	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		51.879	42.532	2	0.0085953	22735	160513_QHF_FH_JSI11Kac_3	57.59	7.5493			0.66156	0.78137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66156	0.78137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1493800	812150	681610	0	0	0	1493800	812150	681610	0	0	0	0	0	0	17879	2286	16941	109028;109029	147035;147036	147035			2	
GDMDVSLPK	1	Unmodified	960.45863	0.45863226	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	2	2	45.355	42.148	2	1.6336E-06	38098	160511_QHF_FH_JSI12i_1	131.06	48.609			0.91739	0.98267	20.791	7	1	Median	1.1918	0.9732	47.702	2	0	Median	0.81481	0.98267	NaN	1	0	Median	1.026	0.98921	12.225	2	1	Median	0.92394	1.002	12.643	2	0	Median	1318800000	691010000	627780000	346210000	160030000	186180000	269700000	143200000	126490000	423220000	237360000	185870000	279660000	150420000	129240000	17880	2286	16942	109030;109031;109032;109033;109034;109035;109036	147037;147038;147039;147040;147041;147042;147043;147044;147045;147046;147047;147048;147049	147040			11	
GDMDVSVPK	1	Unmodified	946.44298	0.44298219	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	36.419	32.246	2	1.3024E-06	28942	160511_QHF_FH_JSI12i_1	133.23	119.24			0.96409	0.95665	7.7102	7	1	Median	1.0786	0.89006	NaN	1	1	Median	0.80535	0.96403	11.677	2	0	Median	1.0385	1.008	7.4363	2	0	Median	0.94166	1.0018	6.5247	2	0	Median	2628000000	1321100000	1306900000	741460000	341660000	399800000	620730000	366690000	254030000	702010000	343290000	358730000	563810000	269470000	294340000	17881	2286	16943	109037;109038;109039;109040;109041;109042;109043	147050;147051;147052;147053;147054;147055;147056;147057;147058;147059	147052			10	
GDMDVSVPK	1	Oxidation (M)	962.4379	0.43789681	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					3	1	1	3	27.003	23.065	2	7.0278E-06	28978	160511_QHF_FH_JSI12i_1	118.5	109.1			1.0266	1.0621	124.04	6	1	Median	2.8896	2.3864	NaN	1	0	Median	18.789	21.919	NaN	1	1	Median	1.0945	1.0738	NaN	1	0	Median	0.89786	0.97918	7.3348	3	0	Median	583790000	102110000	481680000	56682000	12177000	44505000	382470000	17358000	365110000	1191900	451610	740270	143450000	72122000	71325000	17882	2286	16943	109044;109045;109046;109047;109048;109049;109050;109051	147060;147061;147062;147063;147064;147065	147061		1886	6	
GDMEQNDSDNRR	0	Unmodified	1435.5746	0.57461808	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	4.9541	4.7273	3	0.0080714	2686	160511_QHF_FH_JSI10i_1	49.632	40.811			0.92305	0.94378	26.882	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56156	0.64575	NaN	1	0	Median	1.1113	1.0857	NaN	1	0	Median	0.92305	0.94378	NaN	1	0	Median	367730000	200590000	167140000	0	0	0	116710000	82184000	34525000	122740000	50749000	71992000	128280000	67659000	60621000	17883	5433	16944	109052;109053;109054	147066;147067	147067			0	
GDMQLFQTFWFLYHK	1	Unmodified	1959.9342	0.93417563	1116	P17405	SMPD1	Sphingomyelin phosphodiesterase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.224	86.922	3	2.0947E-24	49334	160513_QHF_FH_JSI11Kac_6	155.28	137.36			0.90482	0.89573	6.4318	3	1	Plateau	1.1013	0.93702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89697	0.85626	NaN	1	0	Median	0.90482	0.96984	NaN	1	1	Median	256050000	133380000	122660000	98392000	53527000	44865000	0	0	0	128030000	65397000	62637000	29618000	14457000	15161000	17884	1116	16945	109055;109056;109057	147068;147069;147070;147071	147069			4	
GDMVTLPAGIYHR	0	Unmodified	1428.7184	0.71836919	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							3	2	3	3	59.097	58.409	2;3	1.7544E-05	50174	160511_QHF_FH_JSI12i_3	101.35	93.438			0.89391	0.91109	17.962	11	5	Median	0.95756	0.82968	18.532	3	2	Median	0.74125	0.91025	0.13034	2	1	Median	1.0259	0.9974	23.979	3	2	Plateau	1.02	1.0194	7.0282	3	0	Median	1701800000	855650000	846170000	273100000	128200000	144900000	276210000	149980000	126230000	590740000	299210000	291520000	561770000	278260000	283510000	17885	4461	16946	109058;109059;109060;109061;109062;109063;109064;109065;109066;109067;109068	147072;147073;147074;147075;147076;147077;147078;147079;147080;147081;147082;147083;147084;147085;147086;147087	147085			16	
GDNITLLQSVSN	0	Unmodified	1259.6357	0.635745	1997	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	5.14	4			3	4	1	1			1	6	3	3	72.702	66.668	2	1.6532E-13	26306	160513_QHF_FH_JSI10Kac_1	145.46	127.94			0.93679	1.0411	22.573	12	1	Median	1.0298	0.86185	NaN	1	0	Median	0.74062	0.84569	30.403	5	1	Median	1.0847	1.0731	5.957	3	0	Plateau	0.95712	1.0128	7.9268	3	0	Median	1634800000	855180000	779630000	348290000	175140000	173150000	341450000	183370000	158080000	448500000	237960000	210540000	496560000	258700000	237860000	17886	1997	16947	109069;109070;109071;109072;109073;109074;109075;109076;109077;109078;109079;109080;109081	147088;147089;147090;147091;147092;147093;147094;147095;147096;147097;147098;147099;147100;147101;147102;147103;147104;147105;147106;147107;147108;147109	147107			22	
GDNIYEWR	0	Unmodified	1051.4723	0.47230849	1761	P51965;Q96LR5;Q969T4	UBE2E1;UBE2E2;UBE2E3	Ubiquitin-conjugating enzyme E2 E1;Ubiquitin-conjugating enzyme E2 E2;Ubiquitin-conjugating enzyme E2 E3	yes	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1.5	0.5	3	3									3	2	1	41.977	41.414	2	0.00028101	35389	160511_QHF_FH_JSI11i_2	113.71	98.267			0.88199	0.90289	12.77	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84145	1.0057	20.28	2	1	Median	0.90757	0.88925	8.5136	2	0	Median	0.87435	0.90289	NaN	1	0	Median	246090000	123140000	122960000	0	0	0	79985000	43009000	36976000	137010000	65684000	71329000	29096000	14444000	14652000	17887	1761	16948	109082;109083;109084;109085;109086;109087	147110;147111;147112;147113	147110			4	
GDNNAVDDR	0	Unmodified	974.40535	0.40535113	2067	P67812;P0C7V7	SEC11A;SEC11B	Signal peptidase complex catalytic subunit SEC11A;Putative signal peptidase complex catalytic subunit SEC11B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	4.8158	1.7808	2	2.5464E-08	2479	160511_QHF_FH_JSI10i_1	149.72	121.21			1.1667	1.2295	20.457	5	0	Median	NaN	NaN	NaN	0	0	Median	1.635	1.9074	NaN	1	0	Median	1.2091	1.2097	3.752	2	0	Median	1.1353	1.2109	2.1569	2	0	Median	374180000	150380000	223800000	0	0	0	106240000	38492000	67750000	124510000	54067000	70448000	143420000	57820000	85605000	17888	2067	16949	109088;109089;109090;109091;109092	147114;147115;147116;147117;147118;147119	147118			6	
GDNPFPK	1	Unmodified	773.3708	0.37080353	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	22.07	18.564	2	0.013927	15735	160511_QHF_FH_JSI11i_1	67.032	49.739			0.95849	0.96817	11.15	7	0	Median	1.1893	0.96817	NaN	1	0	Median	0.91573	1.1173	NaN	1	0	Median	0.97917	0.94622	3.3262	2	0	Median	0.80885	0.85668	15.89	3	0	Plateau	1149400000	548420000	600980000	283840000	125800000	158030000	277000000	143010000	133990000	286670000	127500000	159170000	301900000	152100000	149790000	17889	1054	16950	109093;109094;109095;109096;109097;109098;109099	147120;147121;147122;147123;147124;147125;147126;147127;147128;147129	147120			10	
GDNQPLHIFDK	1	Unmodified	1282.6306	0.63060004	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.461	47.341	3	0.010403	40467	160511_QHF_FH_JSI12i_3	36.944	31.442			1.3634	1.3384	27.499	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1806	1.1019	NaN	1	0	Median	1.5745	1.6257	NaN	1	0	Median	75557000	33494000	42063000	0	0	0	0	0	0	28903000	16786000	12117000	46653000	16707000	29946000	17890	3989	16951	109100;109101	147130;147131	147131			2	
GDNRLDLLK	1	Unmodified	1042.5771	0.57710791	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.33		6	4					3		2	2	5	4	38.945	35.786	2;3	0.00031696	30928	160511_QHF_FH_JSI11i_3	74.841	43.419			1.0936	1.1076	12.111	11	1	Median	1.1956	1.0027	NaN	1	0	Median	0.92499	1.1098	8.226	2	0	Median	1.2415	1.1942	6.7723	4	0	Median	0.94265	0.99909	15.492	4	1	Median	2830400000	1278900000	1551500000	232760000	86881000	145870000	275230000	85324000	189900000	1093500000	506210000	587280000	1229000000	600470000	628490000	17891	1520	16952	109102;109103;109104;109105;109106;109107;109108;109109;109110;109111;109112;109113;109114	147132;147133;147134;147135;147136;147137;147138;147139;147140;147141;147142;147143;147144;147145	147132			14	
GDNVYEFHLEFLDLVKPEPVYK	2	Unmodified	2650.3319	0.33190541	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	13.4	5.2			1						4	1	2		2	93.254	87.325	3;4	4.7418E-22	44628	160513_QHF_FH_JSI12Kac_6	140.66	132.85			0.99184	1.0645	22.31	5	2	Median	1.269	1.0645	NaN	1	1	Median	0.75005	0.88118	38.559	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0294	1.0732	7.071	2	0	Median	936270000	513240000	423030000	137740000	67525000	70219000	338440000	197370000	141070000	0	0	0	460090000	248340000	211750000	17892	5177	16953	109115;109116;109117;109118;109119	147146;147147;147148;147149;147150	147148			5	
GDPEAALIQYLTNEEARK	1	Unmodified	2017.0116	0.011633904	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		93.217	92.77	3	9.932E-05	81551	160511_QHF_FH_JSI11i_2	79.97	71.369			0.58407	0.57754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58407	0.57754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33220000	23176000	10044000	0	0	0	0	0	0	33220000	23176000	10044000	0	0	0	17893	5220	16954	109120	147151	147151			1	
GDPEMEQK	1	Unmodified	932.39095	0.39094662	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.856	7.5087	2	0.00028448	5394	160511_QHF_FH_JSI10i_1	113.41	99.74			0.79999	0.89063	94.489	4	1	Median	1.6312	1.3338	NaN	1	0	Median	0.82042	0.97473	NaN	1	0	Median	0.16587	0.161	NaN	1	0	Median	0.78007	0.81378	NaN	1	1	Median	563250000	328660000	234590000	137660000	46164000	91498000	175640000	113640000	62003000	124710000	105210000	19497000	125240000	63645000	61592000	17894	241	16955	109121;109122;109123;109124	147152;147153;147154;147155	147154			4	
GDPEMEQK	1	Oxidation (M)	948.38586	0.38586124	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		4.8829	-2.4379	2	0.027761	1545	160513_QHF_FH_JSI11Kac_3	47.849	44.277			0.90296	0.85452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90296	0.85452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2485200	1255600	1229500	0	0	0	0	0	0	2485200	1255600	1229500	0	0	0	17895	241	16955	109125	147156	147156			1	
GDPERPEAAGLDQDER	0	Acetyl (Protein N-term)	1795.7973	0.79728403	3241	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.08	31.478	2	0.00094865	28180	160511_QHF_FH_JSI12i_1	62.924	47.352			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17896	3241	16956	109126;109127;109128;109129	147157;147158;147159;147160	147158			4	
GDPEWSSETDALVGSR	0	Unmodified	1704.7591	0.75910761	3300	Q7Z7N9	TMEM179B	Transmembrane protein 179B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		60.033	59.267	2	0.00059259	53760	160511_QHF_FH_JSI11i_1	67.358	43.372			1.2916	1.1393	26.044	2	2	Median	1.6786	1.3697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99386	0.94769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60588000	29649000	30939000	21636000	9505100	12131000	0	0	0	38952000	20144000	18808000	0	0	0	17897	3300	16957	109130;109131;109132	147161;147162;147163	147162			3	
GDPIVQHRPMLEER	0	Unmodified	1675.8464	0.84642325	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.201	29.796	3	0.00049155	24354	160511_QHF_FH_JSI9i_3	65.472	53.998			0.94499	0.75763	NaN	1	0	Median	0.94499	0.75763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54252000	26665000	27587000	54252000	26665000	27587000	0	0	0	0	0	0	0	0	0	17898	1500	16958	109133	147164;147165	147165			2	
GDPLGGVISNYLLEK	1	Unmodified	1573.8352	0.83517309	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	98.7	98.515	2	2.5704E-05	86219	160511_QHF_FH_JSI9i_2	83.204	75.941			0.68553	0.82968	14.245	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.68553	0.82968	NaN	1	0	Median	1.058	1.0679	NaN	1	1	Median	0.75662	0.83944	NaN	1	0	Median	60205000	33807000	26398000	0	0	0	20716000	12684000	8032500	23787000	11080000	12707000	15702000	10043000	5659400	17899	376	16959	109134;109135;109136;109137	147166;147167;147168;147169	147167			4	
GDPLGTEGGLDASNTER	0	Unmodified	1687.7649	0.76492127	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.783	39.348	2	0.0059586	35222	160511_QHF_FH_JSI10i_1	57.434	39.625			1.8859	1.99	8.0529	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.8987	2.1433	NaN	1	1	Median	1.8859	1.8248	NaN	1	1	Median	1.9536	1.99	NaN	1	1	Median	55423000	13264000	42159000	0	0	0	17965000	4750000	13215000	18894000	3161600	15733000	18564000	5352800	13212000	17900	2327	16960	109138;109139;109140	147170;147171;147172	147172			3	
GDPLLDQR	0	Unmodified	912.46649	0.46649483	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	2	3	1	27.742	25.438	2	0.0015275	22120	160511_QHF_FH_JSI9i_1	88.294	65.802			1.6232	1.427	23.634	5	2	Median	1.7124	1.3873	NaN	1	0	Median	1.6232	1.9143	NaN	1	1	Median	1.5402	1.5205	8.9708	2	1	Median	0.97357	1.0083	NaN	1	0	Median	751030000	319700000	431320000	181200000	74717000	106480000	172550000	73804000	98749000	203880000	81785000	122100000	193390000	89397000	103990000	17901	552	16961	109141;109142;109143;109144;109145;109146;109147	147173;147174;147175;147176;147177;147178;147179;147180	147179			8	
GDPNKPR	1	Acetyl (K)	824.41407	0.41406533	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			8.7062	1.3506	2	0.019773	3326	160513_QHF_FH_JSI10Kac_3	76.847	39.201			0.92799	1.1048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92799	1.1048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16369000	8544300	7825100	0	0	0	16369000	8544300	7825100	0	0	0	0	0	0	17902	1280	16962	109148	147181;147182	147182	1191		2	
GDPNKPSGFR	1	Unmodified	1073.5254	0.52540669	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		6	8					2		2	4	5	5	10.852	9.41	2;3	7.9124E-05	7675	160511_QHF_FH_JSI11i_3	103.55	55.698			1.0071	0.97079	16.008	16	1	Median	1.0645	0.90352	8.1937	2	0	Median	0.78859	0.96587	2.3246	4	0	Median	1.0332	0.97544	11.078	5	1	Median	1.0047	1.0051	27.298	5	0	Median	3117400000	1556900000	1560500000	297490000	129720000	167770000	825850000	476420000	349430000	1363300000	617240000	746100000	630720000	333520000	297200000	17903	98	16963	109149;109150;109151;109152;109153;109154;109155;109156;109157;109158;109159;109160;109161;109162;109163;109164	147183;147184;147185;147186;147187;147188;147189;147190;147191;147192;147193;147194;147195;147196	147185			14	
GDPNTEEIR	0	Unmodified	1029.4727	0.47270242	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	13.436	11.395	2	0.00065147	9655	160511_QHF_FH_JSI10i_1	87.308	49.07			0.5824	0.61913	22.805	4	3	Median	NaN	NaN	NaN	0	0	Median	0.50413	0.5833	NaN	1	1	Median	0.75025	0.72309	13.521	2	1	Median	0.43963	0.4614	NaN	1	1	Median	136230000	90269000	45960000	0	0	0	38661000	26122000	12539000	59628000	38001000	21627000	37940000	26146000	11793000	17904	1493	16964	109165;109166;109167;109168;109169;109170	147197;147198;147199;147200;147201;147202	147200			6	
GDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVK	1	Unmodified	3497.7903	0.79029517	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	84.635	84.148	4	1.0226E-20	75185	160511_QHF_FH_JSI11i_3	85.395	83.465			0.97231	0.91996	16.572	5	2	Median	NaN	NaN	NaN	0	0	Median	0.74619	0.89783	NaN	1	1	Median	0.90176	0.89224	4.3262	2	1	Median	1.1092	1.1634	15.743	2	0	Median	388120000	203820000	184300000	0	0	0	56669000	22950000	33719000	160430000	89735000	70698000	171020000	91135000	79884000	17905	2800	16965	109171;109172;109173;109174;109175	147203;147204;147205;147206;147207;147208;147209;147210;147211	147204			9	
GDPQVYEELFSYSCPK	1	Unmodified	1917.8455	0.84547978	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	2	2	83.745	83.433	2;3	1.4683E-07	75597	160511_QHF_FH_JSI10i_1	139.86	119			0.86477	0.8767	18.936	7	3	Median	NaN	NaN	NaN	0	0	Median	0.86477	1.0169	10.307	3	3	Median	0.81174	0.78361	11.298	2	0	Median	1.0271	1.0681	27.922	2	0	Median	254340000	138170000	116170000	0	0	0	77898000	43657000	34241000	94951000	54133000	40819000	81490000	40377000	41113000	17906	5494	16966	109176;109177;109178;109179;109180;109181;109182;109183	147212;147213;147214;147215;147216;147217;147218;147219;147220;147221;147222;147223;147224	147221			13	
GDPVAILK	1	Unmodified	811.48035	0.48035398	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								4	2	1	1	43.54	42.724	2	0.0026135	38417	160511_QHF_FH_JSI10i_1	77.058	61.618			0.91185	0.91105	39.505	6	2	Median	1.0736	0.95164	57.72	3	1	Median	0.75625	0.87218	NaN	1	1	Median	1.0064	0.9984	NaN	1	0	Median	0.7726	0.78241	NaN	1	0	Median	511130000	263120000	248010000	146500000	64118000	82384000	116240000	69367000	46876000	134550000	72591000	61957000	113840000	57047000	56792000	17907	5213	16967	109184;109185;109186;109187;109188;109189;109190;109191	147225;147226;147227;147228;147229;147230;147231	147229			7	
GDPVNYILQVLVGR	0	Unmodified	1541.8566	0.85657723	2847	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.04	103.05	2	0.047464	89744	160511_QHF_FH_JSI12i_3	53.211	32.908			1.7247	1.6216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7247	1.6216	NaN	1	0	Median	31462000	11651000	19811000	0	0	0	0	0	0	0	0	0	31462000	11651000	19811000	17908	2847	16968	109192	147232	147232			1	
GDQENVHPDVMLVQPR	0	Unmodified	1832.8839	0.88393097	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	4.07	8	7					2			5	4	4	4	50.49	48.427	2;3	7.5685E-30	42353	160511_QHF_FH_JSI9i_2	208.15	163.53			1.0281	1.0553	7.0952	16	0	Median	1.2652	1.0456	10.025	4	0	Median	0.87725	1.0362	6.5546	4	0	Median	1.081	1.0883	7.0847	4	0	Median	0.9742	1.0561	7.0095	4	0	Median	5452900000	2705400000	2747400000	1071100000	459590000	611510000	1475200000	832560000	642640000	1676400000	816330000	860110000	1230100000	596960000	633180000	17909	2585	16969	109193;109194;109195;109196;109197;109198;109199;109200;109201;109202;109203;109204;109205;109206;109207;109208;109209	147233;147234;147235;147236;147237;147238;147239;147240;147241;147242;147243;147244;147245;147246;147247;147248;147249;147250;147251;147252;147253;147254;147255;147256;147257;147258;147259;147260;147261;147262;147263	147258			31	
GDQENVHPDVMLVQPR	0	Oxidation (M)	1848.8788	0.87884559	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			42.359	41.393	3	0.050535	36467	160511_QHF_FH_JSI10i_2	30.647	24.803			1.0845	1.3476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0845	1.3476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22140000	10084000	12056000	0	0	0	22140000	10084000	12056000	0	0	0	0	0	0	17910	2585	16969	109210	147264	147264			1	
GDQESAEANK	1	Unmodified	1047.4469	0.4468816	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.602	4.3753	2	1.3496E-26	2237	160511_QHF_FH_JSI10i_1	223.36	189.57			0.46246	0.55225	15.491	3	3	Median	NaN	NaN	NaN	0	0	Median	0.46246	0.55225	NaN	1	1	Median	0.66559	0.6546	NaN	1	1	Median	0.45382	0.48045	NaN	1	1	Median	609510000	446270000	163240000	0	0	0	225220000	161720000	63510000	174760000	123960000	50797000	209520000	160590000	48932000	17911	5603	16970	109211;109212;109213;109214	147265;147266;147267;147268	147267			4	
GDQPAASGDSDDDEPPPLPR	0	Unmodified	2034.8767	0.87665657	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	40.561	39.924	2	4.1591E-19	36103	160511_QHF_FH_JSI12i_1	167.71	164.18			0.88578	0.92951	23.335	4	0	Median	0.80086	0.63289	NaN	1	0	Median	0.78481	0.91221	NaN	1	0	Median	0.97972	0.94713	NaN	1	0	Median	1.0469	1.0956	NaN	1	0	Median	166640000	90718000	75920000	26087000	18228000	7858800	49609000	28168000	21440000	52126000	24879000	27246000	38817000	19442000	19374000	17912	115	16971	109215;109216;109217;109218;109219	147269;147270;147271;147272;147273;147274;147275;147276;147277;147278;147279;147280;147281	147273			13	
GDQYIVDMANTK	1	Unmodified	1353.6235	0.62346575	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.419	47.738	2	6.1827E-16	43356	160511_QHF_FH_JSI12i_1	161.19	126.8			1.0484	1.0564	7.6192	4	0	Median	1.3205	1.0813	NaN	1	0	Median	0.76672	0.91689	NaN	1	0	Median	1.0754	1.0696	NaN	1	0	Median	1.0221	1.0434	NaN	1	0	Median	463210000	237890000	225320000	90438000	35074000	55364000	129780000	76663000	53113000	130510000	71049000	59461000	112490000	55107000	57382000	17913	5063	16972	109220;109221;109222;109223	147282;147283;147284;147285;147286;147287;147288	147285			7	
GDREQLLQR	0	Acetyl (Protein N-term)	1155.5996	0.59963426	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.1	3	4	3				3			2	4	4	3	27.387	24.715	2	7.1104E-17	20960	160511_QHF_FH_JSI11i_2	195.88	130.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17914	2224	16973	109224;109225;109226;109227;109228;109229;109230;109231;109232;109233;109234;109235;109236	147289;147290;147291;147292;147293;147294;147295;147296;147297;147298;147299;147300;147301;147302;147303;147304	147302			16	
GDRSEDFGVNEDLADSDAR	0	Unmodified	2066.8777	0.8777192	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.456	12	5								7	3	4	3	45.277	44.469	2;3	4.4244E-32	39667	160511_QHF_FH_JSI11i_1	227	216.81			1.1259	1.0886	7.583	13	3	Median	1.3488	1.093	4.3018	5	3	Plateau	0.86571	1.0045	2.3453	3	0	Plateau	1.1259	1.1023	13.259	3	0	Median	1.0478	1.1112	2.9025	2	0	Median	4555900000	2238800000	2317100000	296470000	133630000	162830000	1373100000	756010000	617080000	1620400000	762800000	857640000	1265900000	586350000	679520000	17915	805	16974	109237;109238;109239;109240;109241;109242;109243;109244;109245;109246;109247;109248;109249;109250;109251;109252;109253	147305;147306;147307;147308;147309;147310;147311;147312;147313;147314;147315;147316;147317;147318;147319;147320;147321;147322;147323;147324;147325;147326;147327;147328;147329;147330;147331;147332;147333;147334;147335	147309			30	
GDSAPATAK	1	Unmodified	816.39775	0.39774656	563	O75781	PALM	Paralemmin-1	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		5.0788	4.9067	2	0.0024848	2806	160511_QHF_FH_JSI10i_1	64.485	14.358			0.8341	0.89921	2.687	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74512	0.88229	NaN	1	0	Median	0.93371	0.91646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	475200000	251320000	223890000	0	0	0	230000000	121240000	108760000	245210000	130080000	115130000	0	0	0	17916	563	16975	109254;109255	147336	147336			1	
GDSDDEYDRR	0	Acetyl (Protein N-term)	1268.4905	0.49053732	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.255	9.8743	2	3.4408E-10	7673	160511_QHF_FH_JSI12i_1	189.38	189.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17917	4521	16976	109256;109257;109258;109259	147337;147338;147339;147340	147338			4	
GDSFTHTPPLDPQELDILK	1	Unmodified	2122.0582	0.058249746	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	88.255	87.706	3	3.013E-05	77177	160511_QHF_FH_JSI11i_2	87.85	71.908			0.80965	0.80386	18.598	8	6	Median	0.78482	0.65741	NaN	1	1	Median	0.61164	0.73345	5.9486	2	1	Median	0.85891	0.84384	8.8735	2	1	Median	0.97688	1.1132	16.723	3	3	Plateau	293210000	157940000	135270000	34657000	20480000	14177000	73923000	45211000	28712000	88810000	49533000	39277000	95816000	42711000	53105000	17918	774	16977	109260;109261;109262;109263;109264;109265;109266;109267	147341;147342;147343;147344;147345;147346;147347;147348	147347			8	
GDSGAAPDVDDK	1	Unmodified	1145.4837	0.48366103	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	6.5	5.5	1				1					1			1	14.149	10.158	2	0.00034652	8947	160511_QHF_FH_JSI9i_1	145.46	123.87			1.0169	0.9874	43.716	2	1	Median	1.6139	1.3451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64078	0.72484	NaN	1	0	Median	87902000	36689000	51213000	86852000	36044000	50808000	0	0	0	0	0	0	1050000	645240	404800	17919	2320	16978	109268;109269	147349;147350	147349			2	
GDSGNELLK	1	Unmodified	931.46108	0.4610751	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	0					5						1	2	2	7.1962	-0.033229	2	0.0059023	2456	160513_QHF_FH_JSI10Kac_2	63.48	8.9303			0.86083	0.89275	9.2375	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84028	1.0033	NaN	1	0	Median	1.0266	0.95792	12.996	2	0	Median	0.84004	0.87117	3.4611	2	0	Median	26002000	14043000	11959000	0	0	0	6164800	3669600	2495300	8563600	4025400	4538100	11273000	6347600	4925700	17920	3647	16979	109270;109271;109272;109273;109274	147351;147352;147353;147354;147355	147352			5	
GDSHLNVQVSNFK	1	Unmodified	1443.7106	0.71064128	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.96	1	7	3					5		3	4	7	2	41.853	39.111	2;3	2.2829E-07	34270	160511_QHF_FH_JSI9i_2	145.91	136.13			0.94959	0.99717	13.414	14	2	Median	1.1122	0.97885	4.1491	2	0	Median	0.68286	0.81508	12.207	4	0	Median	1.0972	1.0742	12.803	6	1	Median	0.93029	0.99717	0.93529	2	1	Median	1135600000	562230000	573350000	157520000	74560000	82963000	220280000	124010000	96269000	522200000	251810000	270380000	235580000	111850000	123730000	17921	3323	16980	109275;109276;109277;109278;109279;109280;109281;109282;109283;109284;109285;109286;109287;109288;109289;109290	147356;147357;147358;147359;147360;147361;147362;147363;147364;147365;147366;147367;147368;147369;147370;147371;147372;147373;147374	147363			18	
GDSKKDDEENYLDLFSHK	3	Unmodified	2138.9756	0.97564233	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		56.186	56.186	4	0.00083051	49831	160511_QHF_FH_JSI11i_3	59.872	54.87			1.7266	1.5816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7266	1.5816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39030000	17123000	21907000	0	0	0	0	0	0	39030000	17123000	21907000	0	0	0	17922	2255	16981	109291	147375	147375			1	
GDSKNAKK	3	2 Acetyl (K)	930.47706	0.47705951	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	6.2926	-0.95152	2	6.4202E-06	2174	160513_QHF_FH_JSI10Kac_3	135.79	87.942			0.7753	0.83516	5.6616	6	0	Median	NaN	NaN	NaN	0	0	Median	0.72902	0.83867	4.0357	2	0	Median	0.83931	0.82347	5.277	2	0	Median	0.80566	0.87061	9.1615	2	0	Median	568430000	304840000	263590000	0	0	0	193950000	106500000	87445000	136190000	70697000	65496000	238290000	127640000	110650000	17923	2285	16982	109292;109293;109294;109295;109296;109297	147376;147377;147378;147379;147380;147381;147382;147383	147381	2385;2386;2387		8	
GDSKNAKKK	4	3 Acetyl (K)	1100.5826	0.58258722	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	1.57				4	10	5	3	4	3	3	7	9	10	12.607	4.5609	2;3	5.0488E-56	4039	160513_QHF_FH_JSI11Kac_2	212.03	122.28			1.0043	1.0125	18.69	29	0	Median	1.0495	0.92464	13.716	3	0	Median	0.68487	0.79735	11.292	7	0	Median	1.1211	1.0864	12.476	9	0	Median	0.99841	1.0548	10.944	10	0	Median	4916400000	2369000000	2547400000	457790000	205370000	252420000	1021200000	598200000	423040000	1729200000	732250000	996960000	1708100000	833200000	874930000	17924	2285	16983	109298;109299;109300;109301;109302;109303;109304;109305;109306;109307;109308;109309;109310;109311;109312;109313;109314;109315;109316;109317;109318;109319;109320;109321;109322;109323;109324;109325;109326	147384;147385;147386;147387;147388;147389;147390;147391;147392;147393;147394;147395;147396;147397;147398;147399;147400;147401;147402;147403;147404;147405;147406;147407;147408;147409;147410;147411;147412;147413;147414;147415;147416;147417;147418;147419;147420;147421;147422;147423;147424	147385	2385;2386;2387;2388		41	
GDSKNAKKK	4	2 Acetyl (K)	1058.572	0.57202253	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	3		By MS/MS	By MS/MS	By MS/MS	13.6	0.484						3	5				2	3	3	5.5643	-2.183	2;3	0.0011217	1860	160513_QHF_FH_JSI11Kac_4	116.52	72.168			0.96814	0.98158	5.3786	8	0	Median	NaN	NaN	NaN	0	0	Median	0.84265	0.99986	9.1045	2	0	Median	0.99527	0.97586	1.0304	3	0	Median	0.9157	1.0049	6.1598	3	0	Plateau	204560000	112800000	91764000	0	0	0	50171000	28797000	21374000	85011000	46046000	38965000	69378000	37954000	31425000	17925	2285	16983	109327;109328;109329;109330;109331;109332;109333;109334	147425;147426;147427;147428;147429;147430;147431;147432	147426	2385;2386;2387;2388		7	
GDSKNAKKKNNK	5	4 Acetyl (K)	1498.774	0.77396981	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	18.749	11.656	2	0.00086361	6068	160513_QHF_FH_JSI11Kac_2	71.555	52.284			0.89682	0.99653	21.16	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89682	0.99653	NaN	1	0	Median	1.3766	1.2906	NaN	1	0	Median	0.78177	0.84847	NaN	1	0	Median	4422000	2468900	1953200	0	0	0	1193900	722850	471020	1627800	913220	714610	1600300	832790	767550	17926	2285	16984	109335;109336;109337	147433;147434;147435;147436;147437	147434	2385;2386;2387;2388;2390		5	
GDSLDSVEALIK	1	Unmodified	1245.6452	0.64524705	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		78.086	77.754	2	0.0019973	70757	160511_QHF_FH_JSI11i_1	60.255	45.589			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17927	2470	16985	109338	147438	147438			1	
GDSPLHSIR	0	Unmodified	980.50394	0.50394297	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	16.845	16.86	2	0.00072965	13985	160511_QHF_FH_JSI11i_3	88.948	65.929			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17928	2540	16986	109339;109340;109341	147439;147440;147441	147439			3	
GDSPVTSPFQNYSSIHSQSR	0	Unmodified	2193.0087	0.008673791	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	50.505	49.633	3	2.9458E-07	43576	160511_QHF_FH_JSI9i_2	96.79	90.654			0.83808	0.82279	12.058	3	0	Median	1.1479	0.97437	NaN	1	0	Median	0.73167	0.82279	NaN	1	0	Median	0.83808	0.77149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93542000	43477000	50065000	29662000	11404000	18257000	22917000	14950000	7967100	40963000	17123000	23841000	0	0	0	17929	4653	16987	109342;109343;109344;109345	147442;147443;147444;147445;147446;147447	147446			6	
GDSSAEELK	1	Unmodified	934.42436	0.42435524	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.9907	8.868	2	0.0016754	6561	160511_QHF_FH_JSI11i_1	68.016	18.575			1.1568	1.1371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1568	1.1371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128060000	60975000	67089000	0	0	0	0	0	0	128060000	60975000	67089000	0	0	0	17930	1275	16988	109346	147448	147448			1	
GDSSHVVSEGVPR	0	Unmodified	1324.6371	0.63714198	5008	Q9NUP1	BLOC1S4	Biogenesis of lysosome-related organelles complex 1 subunit 4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				18.312	17.455	2	0.0085936	14710	160511_QHF_FH_JSI9i_2	47.894	32.633			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17931	5008	16989	109347	147449	147449			1	
GDSVIVVLR	0	Unmodified	956.56548	0.56548059	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	4.28	2					4	5	5	2	3	6	5	4	61.093	52.298	2	2.2286E-63	29515	160513_QHF_FH_JSI11Kac_4	215.1	152.44			0.9545	0.91863	15.112	14	0	Median	1.154	0.99305	21.294	2	0	Median	0.704	0.85378	9.4108	5	0	Median	0.9928	0.98767	8.4491	3	0	Median	1.0111	1.1024	16.218	4	0	Median	486170000	260360000	225820000	38950000	18060000	20890000	213690000	124160000	89535000	135770000	65760000	70012000	97760000	52382000	45378000	17932	2002	16990	109348;109349;109350;109351;109352;109353;109354;109355;109356;109357;109358;109359;109360;109361;109362;109363;109364;109365	147450;147451;147452;147453;147454;147455;147456;147457;147458;147459;147460;147461;147462;147463;147464;147465;147466;147467;147468;147469;147470;147471;147472;147473;147474;147475;147476	147460			25	
GDSVIVVLRNPLIAGK	1	Unmodified	1649.9828	0.98284038	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	3	1		82.7	81.402	2;3	8.0259E-09	68325	160511_QHF_FH_JSI10i_3	134.9	123.21			1.0897	1.0406	0.024687	2	2	Median	1.3095	1.0408	NaN	1	1	Median	0.90687	1.0404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101170000	42163000	59004000	51382000	19513000	31870000	49785000	22651000	27134000	0	0	0	0	0	0	17933	2002	16991	109366;109367;109368;109369;109370	147477;147478;147479;147480;147481	147478			5	
GDSVSDSGSDALR	0	Unmodified	1264.5531	0.55313758	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	1	0	3									1	1		1	17.687	17.083	2	3.2928E-10	14524	160511_QHF_FH_JSI10i_1	145.46	114.89			1.5147	1.4851	19.184	3	0	Plateau	1.5571	1.2531	NaN	1	0	Median	0.96865	1.0988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5147	1.6034	NaN	1	0	Median	118190000	56082000	62113000	40781000	20495000	20286000	34667000	18033000	16634000	0	0	0	42747000	17554000	25193000	17934	2846	16992	109371;109372;109373	147482	147482			1	
GDTAKPYFVK	2	Acetyl (K);Acetyl (Protein N-term)	1208.6077	0.60773933	2999	Q5VYS8	ZCCHC6	Terminal uridylyltransferase 7	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			70.498	60.997	2	0.045149	24378	160513_QHF_FH_JSI10Kac_1	32.841	21.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17935	2999	16993	109374	147483	147483			1	
GDTALDMR	0	Unmodified	877.39637	0.39636635	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.755	19.251	2	0.00036521	16549	160511_QHF_FH_JSI10i_1	110.67	86.488			0.97886	0.99871	13.937	4	0	Median	1.1666	0.95915	NaN	1	0	Median	0.88676	1.0399	NaN	1	0	Median	1.0805	1.0496	NaN	1	0	Median	0.76178	0.77765	NaN	1	0	Median	309860000	152860000	157000000	70879000	28996000	41884000	90659000	45038000	45621000	82303000	42387000	39917000	66016000	36439000	29576000	17936	3896	16994	109375;109376;109377;109378	147484;147485;147486;147487	147486			4	
GDTANEIGQVLHFENVK	1	Unmodified	1869.9221	0.92209062	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.722	5	10	6							4	5	7	5	74.276	73.628	2;3	2.3477E-65	64496	160511_QHF_FH_JSI11i_2	251.63	241.02			1.0208	1.094	30.546	19	10	Median	1.2279	1.0396	8.2068	3	1	Plateau	0.9308	1.1284	12.175	5	3	Median	0.95951	1.0628	7.4204	6	4	Linear	0.96828	1.0729	59.687	5	2	Median	8264400000	4142500000	4121900000	1159000000	535930000	623030000	1623300000	837790000	785510000	4007300000	2020200000	1987100000	1474800000	748500000	726270000	17937	1464	16995	109379;109380;109381;109382;109383;109384;109385;109386;109387;109388;109389;109390;109391;109392;109393;109394;109395;109396;109397;109398;109399	147488;147489;147490;147491;147492;147493;147494;147495;147496;147497;147498;147499;147500;147501;147502;147503;147504;147505;147506;147507;147508;147509;147510;147511;147512;147513;147514;147515;147516	147508			28	
GDTEQEIQR	0	Unmodified	1074.4942	0.49416614	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.2304	9.1077	2	0.00092755	6762	160511_QHF_FH_JSI11i_1	83.168	64.629			2.6469	2.5972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6469	2.5972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	251750000	40273000	211480000	0	0	0	0	0	0	251750000	40273000	211480000	0	0	0	17938	416	16996	109400	147517	147517			1	
GDTGGEDTAAPGR	0	Unmodified	1202.5164	0.51635814	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.43	5.58	3				3	1					2	3	2	8.2398	3.9879	2	8.4615E-136	5279	160511_QHF_FH_JSI10i_1	294.61	283.75			0.88162	0.92651	5.8246	7	0	Median	NaN	NaN	NaN	0	0	Median	0.74143	0.84818	2.0815	2	0	Median	0.97464	0.92661	3.7952	3	0	Median	0.87856	0.93262	3.5559	2	0	Median	416560000	225800000	190760000	0	0	0	152640000	88827000	63817000	135500000	62760000	72740000	128420000	74216000	54204000	17939	4760	16997	109401;109402;109403;109404;109405;109406;109407	147518;147519;147520;147521;147522;147523;147524;147525;147526;147527;147528;147529;147530	147526			13	
GDTLLQALDLLPLLIQTVEK	1	Unmodified	2192.2668	0.26678596	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		105.01	104.92	2;3	9.7038E-07	92592	160511_QHF_FH_JSI11i_2	90.718	81.895			1.0393	1.0274	1.0347	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0393	1.0274	1.0347	2	1	Median	NaN	NaN	NaN	0	0	Median	22976000	11371000	11604000	0	0	0	0	0	0	22976000	11371000	11604000	0	0	0	17940	3860	16998	109408;109409	147531;147532	147531			2	
GDTPGHATPGHGGATSSAR	0	Unmodified	1732.7877	0.7877224	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			5.7601	5.2638	3	0.00095472	3334	160511_QHF_FH_JSI10i_3	64.83	56.855			0.54785	0.6238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54785	0.6238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31895000	20940000	10955000	0	0	0	31895000	20940000	10955000	0	0	0	0	0	0	17941	542	16999	109410	147533	147533			0	
GDTSGDYK	1	Unmodified	841.34538	0.34537664	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	4.7125	-2.5349	2	0.0015142	1484	160513_QHF_FH_JSI11Kac_3	98.523	94.67			1.0566	1.082	0.05556	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1199	1.0816	NaN	1	0	Median	0.99688	1.0825	NaN	1	0	Median	10194000	4987700	5206000	0	0	0	0	0	0	6847400	3308500	3538900	3346300	1679200	1667100	17942	916	17000	109411;109412	147534;147535;147536;147537	147535			4	
GDTSGDYKK	2	Unmodified	969.44034	0.44033966	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.08	11	2	2			1	3			4	5	5	5	4.6679	1.4126	2;3	4.7609E-40	2287	160511_QHF_FH_JSI10i_1	186.76	161.21			1.1391	1.0387	60.899	15	6	Median	1.1789	0.8671	50.834	4	1	Median	0.8153	0.97772	44.006	4	1	Median	1.2746	1.2927	53.674	4	2	Median	1.1501	1.2152	97.06	3	2	Median	14677000000	6917100000	7759800000	1870300000	814530000	1055800000	3812300000	2182100000	1630200000	4026500000	1734200000	2292300000	4967800000	2186300000	2781500000	17943	916	17001	109413;109414;109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429;109430;109431	147538;147539;147540;147541;147542;147543;147544;147545;147546;147547;147548;147549;147550;147551;147552;147553;147554;147555;147556;147557;147558;147559;147560	147550			23	
GDTSGDYKK	2	Acetyl (K)	1011.4509	0.45090434	916	P08758	ANXA5	Annexin A5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.49					3	2					2	2	1	11.043	3.7441	2	8.4717E-32	4538	160513_QHF_FH_JSI11Kac_3	195.17	171.2			0.68802	0.74495	53.448	5	0	Median	NaN	NaN	NaN	0	0	Median	0.9214	1.0941	0.20784	2	0	Median	0.39081	0.3812	12.153	2	0	Median	0.68802	0.74495	NaN	1	0	Median	127090000	86202000	40891000	0	0	0	33235000	17926000	15309000	66582000	50480000	16101000	27277000	17796000	9480900	17944	916	17001	109432;109433;109434;109435;109436	147561;147562;147563;147564	147562	671		4	
GDTSGDYRK	1	Unmodified	997.44649	0.44648767	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	4.6835	4.2379	2;3	1.0623E-24	2133	160511_QHF_FH_JSI12i_2	197.3	142.51			1.0656	1.2046	19.633	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3628	1.3788	NaN	1	0	Median	0.94359	1.0621	17.802	2	0	Median	552900000	271380000	281520000	0	0	0	0	0	0	175620000	76412000	99203000	377280000	194970000	182320000	17945	932	17002	109437;109438;109439;109440	147565;147566;147567;147568	147566			4	
GDTSMLKPTLMAAVPEIMDR	1	Oxidation (M)	2191.0687	0.068696552	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	86.618	86.618	3	2.433E-05	77274	160511_QHF_FH_JSI11i_3	76.027	66.743			0.89987	0.85971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89987	0.85971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18324000	10128000	8196200	0	0	0	0	0	0	18324000	10128000	8196200	0	0	0	17946	707	17003	109441;109442	147569;147570	147569		247	2	
GDTSMLKPTLMAAVPEIMDR	1	Unmodified	2175.0738	0.07378193	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	95.133	94.866	3	5.8993E-26	82064	160511_QHF_FH_JSI12i_3	182.15	172.86			1.0085	0.99997	58.73	6	1	Median	1.2268	1.0401	NaN	1	0	Median	0.75062	0.89239	3.1318	2	0	Median	2.0172	1.9655	101.14	2	1	Median	1.0036	1.042	NaN	1	0	Median	588810000	282590000	306220000	71043000	34512000	36531000	123660000	76603000	47053000	277540000	116180000	161360000	116570000	55296000	61275000	17947	707	17003	109443;109444;109445;109446;109447;109448	147571;147572;147573;147574;147575;147576;147577	147577			7	
GDTVLLK	1	Unmodified	744.43815	0.43815481	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.14	5					4	3			2	3	3	4	29.42	23.248	2	0.0015044	15535	160513_QHF_FH_JSI11Kac_4	107.43	61.059			1.0169	0.96905	38.142	12	1	Median	1.1518	0.91904	1.8486	2	0	Median	1.039	1.2206	14.663	3	0	Plateau	1.2221	1.1891	13.425	3	0	Plateau	0.96457	1.0496	66.308	4	1	Median	4890400000	1993700000	2896700000	1177300000	484500000	692810000	995250000	470130000	525120000	1349700000	457190000	892500000	1368200000	581900000	786250000	17948	1846	17004	109449;109450;109451;109452;109453;109454;109455;109456;109457;109458;109459;109460	147578;147579;147580;147581;147582;147583;147584;147585;147586;147587;147588;147589;147590;147591;147592;147593;147594;147595;147596;147597;147598;147599	147589			22	
GDTVLLKGK	2	Acetyl (K)	971.56515	0.56514624	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	45.314	36.212	2	0.00013019	20315	160513_QHF_FH_JSI11Kac_3	114.89	63.04			0.40276	0.43579	61.93	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89141	1.0512	NaN	1	0	Median	0.32252	0.31832	NaN	1	0	Median	0.40276	0.43579	NaN	1	0	Median	16513000	10974000	5538400	0	0	0	4173200	1748900	2424300	8628700	6569500	2059200	3710700	2655800	1054900	17949	1846	17005	109461;109462;109463	147600;147601;147602	147600	1856		3	
GDTWYLVDSR	0	Unmodified	1210.5619	0.56185177	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	67.057	56.349	2	0.0054946	30911	160513_QHF_FH_JSI12Kac_4	64.04	48.889			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17950	5626	17006	109464	147603	147603			1	
GDVAEGDLIEHFSQFGTVEK	1	Unmodified	2177.0277	0.027677899	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.68	3	8	4							3	4	4	4	84.868	84.247	2;3	1.9054E-68	72700	160511_QHF_FH_JSI12i_2	234.11	225.89			0.73847	0.73661	32.293	15	0	Median	0.79627	0.67461	48.754	3	0	Median	0.6651	0.8092	41.091	4	0	Median	0.73658	0.72582	15.996	4	0	Median	0.77719	0.84999	12.464	4	0	Median	3386700000	1800000000	1586700000	497500000	275420000	222080000	792290000	454870000	337420000	1204300000	626730000	577590000	892620000	442990000	449640000	17951	2361	17007	109465;109466;109467;109468;109469;109470;109471;109472;109473;109474;109475;109476;109477;109478;109479	147604;147605;147606;147607;147608;147609;147610;147611;147612;147613;147614;147615;147616;147617;147618;147619;147620;147621;147622;147623;147624;147625;147626;147627;147628;147629;147630;147631;147632;147633;147634	147612			31	
GDVAFVK	1	Unmodified	734.39629	0.39629	66	CON__Q29443;CON__Q0IIK2;CON__Q2HJF0;P02787	TF	Serotransferrin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1			1	1	1	2	28.481	25.717	2	0.0084038	22486	160511_QHF_FH_JSI11i_1	83.614	39.003		+	0.93127	0.94359	16.62	4	0	Median	1.0947	0.90857	NaN	1	0	Median	0.83566	0.97995	NaN	1	0	Median	0.779	0.75898	NaN	1	0	Median	1.0378	1.1314	NaN	1	0	Median	364810000	209440000	155370000	79699000	42218000	37481000	157570000	86420000	71150000	123590000	78860000	44735000	3948000	1944300	2003700	17952	66	17008	109480;109481;109482;109483;109484	147635;147636;147637;147638;147639;147640;147641	147635			7	
GDVAVVR	0	Unmodified	714.40244	0.40243801	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.332	12.811	2	0.0040306	10072	160511_QHF_FH_JSI9i_1	100.67	55.697			0.94954	1.0366	3.1584	3	1	Median	1.343	1.0774	NaN	1	0	Median	0.88706	1.0366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94954	1.012	NaN	1	0	Median	746240000	369890000	376350000	242790000	96616000	146180000	248060000	142670000	105390000	0	0	0	255380000	130610000	124780000	17953	1507	17009	109485;109486;109487;109488	147642;147643;147644;147645;147646	147645			5	
GDVDILMEFLLNVTTAPEFR	0	Unmodified	2279.1508	0.15076992	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		103.89	94.703	3	4.1292E-08	34458	160513_QHF_FH_JSI11Kac_1	97.32	84.829			0.56271	0.53999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56271	0.53999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4107000	2390200	1716800	0	0	0	0	0	0	4107000	2390200	1716800	0	0	0	17954	1216	17010	109489	147647	147647			1	
GDVDISLPK	1	Unmodified	942.50221	0.50221163	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	51.961	48.016	2	5.1108E-05	44061	160511_QHF_FH_JSI12i_1	98.033	7.3765			1.029	1.0329	10.009	8	0	Median	1.0722	0.85693	NaN	1	0	Median	0.85096	1.024	12.195	2	0	Median	1.0608	1.0329	0.67934	2	0	Median	1.0154	1.0628	11.503	3	0	Median	1276400000	625220000	651160000	246120000	115040000	131080000	283090000	153600000	129480000	319430000	142320000	177100000	427740000	214250000	213490000	17955	2286	17011	109490;109491;109492;109493;109494;109495;109496;109497	147648;147649;147650;147651;147652;147653;147654;147655;147656;147657;147658;147659;147660;147661;147662;147663	147651			16	
GDVDVSGPK	1	Unmodified	872.42396	0.42396131	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	1	3	2	15.818	12.506	2	0.0018318	11141	160511_QHF_FH_JSI12i_1	76.679	54.548			1.0372	1.0614	28.729	7	3	Median	1.0985	0.89561	NaN	1	0	Median	1.0372	1.2022	NaN	1	1	Median	1.1044	1.0614	45.47	3	2	Median	0.9235	0.97199	14.221	2	0	Median	597150000	315990000	281160000	172600000	88174000	84429000	153110000	86801000	66308000	156740000	76004000	80736000	114690000	65011000	49684000	17956	2286	17012	109498;109499;109500;109501;109502;109503;109504	147664;147665;147666;147667;147668;147669;147670;147671	147667			8	
GDVDVSLPEVEGEMK	1	Unmodified	1602.7447	0.7447031	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.155	69.788	2	8.8314E-07	63444	160511_QHF_FH_JSI11i_1	88.021	73.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17957	2286	17013	109505	147672	147672			1	
GDVDVSLPK	1	Unmodified	928.48656	0.48656157	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	5.44	4				4	4				1	3	5	3	46.393	40.246	2	1.317E-08	35917	160511_QHF_FH_JSI10i_1	152.47	129.45			0.9513	1.0366	16.789	11	1	Median	1.4662	1.1612	NaN	1	0	Median	0.76533	0.896	10.021	3	0	Plateau	1.084	1.0548	27.016	4	1	Median	0.9513	1.1748	9.2532	3	0	Plateau	5582100000	2859700000	2722400000	1007100000	445270000	561880000	1563800000	860080000	703740000	1673300000	855220000	818120000	1337800000	699100000	638660000	17958	2286	17014	109506;109507;109508;109509;109510;109511;109512;109513;109514;109515;109516;109517	147673;147674;147675;147676;147677;147678;147679;147680;147681;147682;147683;147684;147685;147686;147687;147688;147689;147690;147691;147692;147693;147694;147695;147696;147697;147698	147686			25	
GDVDVSVPK	1	Unmodified	914.47091	0.4709115	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	5.78	6				3	4				1	4	3	5	36.543	31.855	2	8.7366E-05	27138	160511_QHF_FH_JSI12i_1	94.85	62.915			1.0241	1.0441	72.019	12	2	Median	1.3901	1.1578	NaN	1	0	Median	0.76297	0.90122	93.24	4	1	Median	2.2556	2.2129	47.984	3	0	Plateau	1.0273	1.0866	82.473	4	1	Median	1896500000	774900000	1121600000	355690000	146920000	208780000	476190000	205260000	270930000	475420000	155710000	319710000	589150000	267020000	322140000	17959	2286	17015	109518;109519;109520;109521;109522;109523;109524;109525;109526;109527;109528;109529;109530	147699;147700;147701;147702;147703;147704;147705;147706;147707;147708;147709;147710;147711;147712;147713;147714;147715;147716;147717;147718;147719	147703			20	
GDVDVTGPK	1	Unmodified	886.43961	0.43961137	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	5.44	4				5	2				1	3	3	4	19.836	15.346	2	0.00017136	12664	160511_QHF_FH_JSI12i_1	87.476	9.744			0.53789	0.53053	32.946	10	3	Linear	0.75698	0.62426	NaN	1	1	Median	0.75571	0.86982	18.801	2	1	Median	0.49163	0.48502	36.509	3	0	Plateau	0.54674	0.57335	37.549	4	1	Linear	562350000	357960000	204390000	140290000	91585000	48706000	138930000	92039000	46888000	135910000	78236000	57676000	147220000	96099000	51120000	17960	2286	17016	109531;109532;109533;109534;109535;109536;109537;109538;109539;109540;109541	147720;147721;147722;147723;147724;147725;147726;147727;147728;147729;147730;147731;147732;147733	147723			14	
GDVDVTLPK	1	Unmodified	942.50221	0.50221163	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	5.94	3					4				1	2	3	1	46.264	41.263	2	1.1463E-05	36339	160511_QHF_FH_JSI9i_1	110.87	7.3084			0.93757	0.94063	18.32	6	1	Median	1.1749	0.96052	NaN	1	0	Median	0.68011	0.80739	NaN	1	0	Median	1.041	1.0247	27.147	3	1	Median	0.84443	0.92116	NaN	1	0	Median	490960000	262490000	228460000	127950000	64030000	63916000	174330000	110790000	63548000	185930000	86170000	99764000	2742100	1506500	1235600	17961	2286	17017	109542;109543;109544;109545;109546;109547;109548	147734;147735;147736;147737;147738;147739;147740;147741;147742;147743	147741			10	
GDVEAFAK	1	Unmodified	835.40758	0.40758296	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	26.599	23.368	2	0.0030152	20681	160511_QHF_FH_JSI12i_1	75.738	62.067			1.1402	1.0642	23.221	6	1	Median	1.335	1.1075	NaN	1	0	Median	1.1671	1.3592	40.241	2	1	Median	1.0298	1.0123	0.46871	2	0	Median	1.262	1.3442	NaN	1	0	Median	875830000	470120000	405710000	201240000	103100000	98143000	187380000	107890000	79493000	199700000	99973000	99730000	287500000	159160000	128350000	17962	2726	17018	109549;109550;109551;109552;109553;109554	147744;147745;147746;147747	147745			4	
GDVEEDEAVPDSEQDIKPR	1	Unmodified	2126.9604	0.96038619	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			38.772	38.391	2	0.00014614	34417	160511_QHF_FH_JSI10i_1	98.942	91.572			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7271000	7271000	0	0	0	0	7271000	7271000	0	0	0	0	0	0	0	17963	205	17019	109555	147748	147748			1	
GDVEEDETIPDSEQDIRPR	0	Unmodified	2198.9927	0.99274896	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	4.63	7							1		1	2	3	2	45.596	43.734	2;3	5.1006E-53	39652	160511_QHF_FH_JSI11i_1	220.69	206.73			1.0375	1.0561	5.3779	8	0	Median	1.24	1.0246	NaN	1	0	Median	0.87665	1.0174	6.5449	2	0	Median	1.0914	1.0498	7.1681	3	0	Median	1.0375	1.0857	3.0675	2	0	Median	3731500000	1898900000	1832600000	217070000	92906000	124170000	1135900000	623470000	512460000	1240200000	623310000	616900000	1138300000	559220000	579070000	17964	3914	17020	109556;109557;109558;109559;109560;109561;109562;109563	147749;147750;147751;147752;147753;147754;147755;147756;147757;147758;147759;147760;147761;147762	147750			14	
GDVEHTIR	0	Unmodified	925.46174	0.4617438	5224	Q9P2T1	GMPR2	GMP reductase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	9.4507	9.0246	2	6.3462E-05	6666	160511_QHF_FH_JSI11i_2	134.15	103.97			1.1437	1.1903	25.927	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.001	0.99088	NaN	1	0	Median	1.3068	1.4298	NaN	1	0	Median	75040000	34840000	40200000	0	0	0	0	0	0	47803000	23560000	24243000	27237000	11280000	15957000	17965	5224	17021	109564;109565	147763;147764;147765	147764			3	
GDVEKGK	2	Acetyl (K);Acetyl (Protein N-term)	815.4025	0.40249759	2143	P99999;CON__P62894	CYCS	Cytochrome c	yes	no	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	17.366	9.9152	2	0.0044483	5312	160513_QHF_FH_JSI12Kacf_1	49.358	33.205			0.70093	0.97049	32.069	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85314	0.97655	NaN	1	0	Median	0.57587	0.55863	NaN	1	0	Median	0.92119	0.97049	NaN	1	0	Median	11862000	6402600	5459500	0	0	0	4289400	2029500	2259800	4469800	2726500	1743400	3102900	1646600	1456300	17966	2143	17022	109566;109567;109568	147766;147767;147768;147769;147770;147771	147767	2238		6	
GDVEKGKK	3	Acetyl (K);Acetyl (Protein N-term)	943.49746	0.4974606	2143	P99999;CON__P62894	CYCS	Cytochrome c	yes	no	1	1	0	2		By MS/MS	By MS/MS		13	0						2					1	1		12.65	5.2702	2	0.0056417	5271	160513_QHF_FH_JSI11Kac_3	43.246	23.543			0.52266	0.55605	60.327	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72827	0.85187	NaN	1	0	Median	0.37509	0.36295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16290000	9616900	6673300	0	0	0	5691100	2818600	2872500	10599000	6798300	3800800	0	0	0	17967	2143	17023	109569;109570	147772;147773	147772	2238		2	
GDVEKLSK	2	Acetyl (K)	916.48656	0.48656157	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		26.634	18.991	2	0.0095101	11681	160513_QHF_FH_JSI11Kac_3	75.378	32.132			1.7899	1.8722	184.42	2	1	Median	NaN	NaN	NaN	0	0	Median	6.2436	6.8977	NaN	1	1	Median	0.51313	0.50818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6375500	3159200	3216300	0	0	0	1156400	109950	1046400	5219200	3049300	2169900	0	0	0	17968	1940	17024	109571;109572	147774;147775;147776	147775	1950		3	
GDVENIEVVQK	1	Unmodified	1228.6299	0.62993134	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	43.32	37.565	2	6.3016E-46	20728	160513_QHF_FH_JSI12Kac_3	206.48	168.18			0.85983	0.90866	13.697	10	0	Median	0.89315	0.72731	NaN	1	0	Median	0.80409	0.95126	9.5918	3	0	Median	0.87925	0.84885	16.772	3	0	Median	0.84084	0.89375	10.234	3	0	Median	3376800000	1668400000	1708400000	667720000	324490000	343230000	909190000	478550000	430640000	929320000	446390000	482930000	870630000	418980000	451640000	17969	1544	17025	109573;109574;109575;109576;109577;109578;109579;109580;109581;109582	147777;147778;147779;147780;147781;147782;147783;147784;147785;147786;147787;147788;147789;147790;147791;147792;147793;147794;147795;147796	147793			20	
GDVGLGLVK	1	Unmodified	856.50182	0.5018177	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.01	4	4	3				3			3	4	3	4	48.681	46.249	2	5.1589E-06	42207	160511_QHF_FH_JSI12i_1	116.73	84.255			0.96262	0.97359	6.1125	13	0	Median	1.2821	1.058	10.641	3	0	Plateau	0.86541	1.0274	4.57	3	0	Median	0.98988	0.97359	3.3672	3	0	Plateau	0.95216	0.98105	5.2889	4	0	Median	2847500000	1353100000	1494400000	576000000	228370000	347630000	701410000	330530000	370890000	874750000	433510000	441230000	695350000	360740000	334610000	17970	3213	17026	109583;109584;109585;109586;109587;109588;109589;109590;109591;109592;109593;109594;109595;109596	147797;147798;147799;147800;147801;147802;147803;147804;147805;147806;147807;147808;147809;147810;147811;147812;147813;147814;147815;147816;147817;147818	147803			22	
GDVGLVAENSR	0	Unmodified	1115.5571	0.55710075	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	1	3	27.148	23.902	2	9.9467E-05	21134	160511_QHF_FH_JSI10i_1	87.298	50.713			1.1775	1.2328	35.668	6	2	Median	1.1672	0.95247	NaN	1	0	Median	1.1878	1.4139	NaN	1	0	Median	1.1023	1.0748	NaN	1	0	Median	1.4609	1.5197	49.721	3	2	Median	350210000	173530000	176680000	102430000	51569000	50863000	75182000	34024000	41158000	86502000	40874000	45628000	86094000	47067000	39027000	17971	1148	17027	109597;109598;109599;109600;109601;109602	147819;147820;147821;147822;147823;147824;147825;147826;147827	147825			9	
GDVGSADIQDLEK	1	Unmodified	1345.6361	0.63613893	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	5.57	4				4	1				1	4	2	2	49.828	45.687	2	7.8449E-23	41072	160511_QHF_FH_JSI11i_1	148.78	113.34			1.0451	0.98168	35.945	5	5	Median	1.1217	0.93441	NaN	1	1	Median	0.84485	0.98168	17.487	3	3	Median	NaN	NaN	NaN	0	0	Median	1.8716	2.1032	NaN	1	1	Median	442360000	213920000	228440000	149560000	70001000	79558000	291620000	143500000	148120000	0	0	0	1181500	414900	766610	17972	5669	17028	109603;109604;109605;109606;109607;109608;109609;109610;109611	147828;147829;147830;147831;147832;147833;147834;147835;147836	147828			9	
GDVISVEK	1	Unmodified	845.44945	0.44944778	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.946	23.419	2	0.016878	20698	160511_QHF_FH_JSI12i_1	58.981	34.349			1.1477	1.1932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1477	1.1932	NaN	1	1	Median	150360000	74521000	75838000	0	0	0	0	0	0	0	0	0	150360000	74521000	75838000	17973	4627	17029	109612	147837	147837			1	
GDVLHMHYTGK	1	Unmodified	1256.5972	0.59719142	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2		1	1	4	28.151	26.005	2;3;4	4.6598E-06	22124	160511_QHF_FH_JSI11i_3	91.914	82.071			1.3761	1.489	25.758	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4654	1.7532	NaN	1	0	Median	1.2923	1.2061	NaN	1	0	Median	1.62	1.6128	34.404	2	0	Median	329170000	133890000	195270000	0	0	0	9551100	4067700	5483400	95043000	31988000	63055000	224570000	97838000	126740000	17974	1285	17030	109613;109614;109615;109616;109617;109618	147838;147839;147840;147841;147842;147843;147844	147838			6	
GDVLTIVAVTK	1	Unmodified	1114.6598	0.6597749	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0		By MS/MS			9.33	5.91	1					1	1				3			72.839	68.48	2	0.0023402	33416	160513_QHF_FH_JSI10Kac_3	71.349	57.142			1.009	1.1428	8.2825	2	1	Median	NaN	NaN	NaN	0	0	Median	1.009	1.1428	8.2825	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12999000	6526200	6473000	0	0	0	12999000	6526200	6473000	0	0	0	0	0	0	17975	1517	17031	109619;109620;109621	147845;147846;147847;147848;147849	147849			5	
GDVPSVGLEGPDVDLQGPEAK	1	Unmodified	2078.0168	0.016778861	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	73.487	72.943	2;3	5.0542E-33	66092	160511_QHF_FH_JSI10i_1	145.69	116.36			0.85033	0.80992	19.908	6	0	Median	0.79296	0.65611	2.1653	2	0	Median	0.64707	0.75497	NaN	1	0	Median	1.0048	0.96718	15.159	2	0	Median	0.90786	0.92652	NaN	1	0	Median	233330000	119300000	114030000	77347000	40949000	36398000	41614000	23444000	18170000	81637000	40888000	40749000	32730000	14021000	18709000	17976	2286	17032	109622;109623;109624;109625;109626;109627;109628	147850;147851;147852;147853;147854;147855;147856;147857;147858;147859;147860;147861	147857			12	
GDVREPFHSILSVLK	1	Unmodified	1695.9308	0.93080481	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			32							12	12	5	3	85.396	84.478	3;4	3.0305E-07	73476	160511_QHF_FH_JSI11i_3	137.19	117.87			0.91499	0.89535	38.608	32	8	Median	1.089	0.89535	26.604	12	3	Median	0.73077	0.8557	12.655	12	4	Median	1.103	1.0431	66.758	5	1	Median	0.7916	0.81575	70.164	3	0	Median	1619300000	747200000	872120000	310070000	150190000	159880000	321630000	171720000	149910000	755180000	306230000	448950000	232440000	119060000	113380000	17977	3623	17033	109629;109630;109631;109632;109633;109634;109635;109636;109637;109638;109639;109640;109641;109642;109643;109644;109645;109646;109647;109648;109649;109650;109651;109652;109653;109654;109655;109656;109657;109658;109659;109660	147862;147863;147864;147865;147866;147867;147868;147869;147870;147871;147872;147873;147874;147875;147876;147877;147878;147879;147880;147881;147882;147883;147884;147885;147886;147887;147888;147889;147890;147891;147892;147893;147894;147895;147896;147897;147898;147899;147900;147901;147902;147903;147904;147905;147906;147907;147908;147909;147910;147911;147912;147913;147914;147915	147867			53	
GDVSNLDPNFSFEGTK	1	Unmodified	1725.7846	0.78459408	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.968	67.383	2	8.5274E-30	60981	160511_QHF_FH_JSI10i_1	220.69	212.39			0.91196	0.92289	10.9	4	0	Median	1.1159	0.92475	NaN	1	0	Median	0.8885	1.0442	NaN	1	0	Median	0.93603	0.92103	NaN	1	0	Median	0.79095	0.79984	NaN	1	0	Median	763070000	381370000	381700000	151990000	71734000	80260000	193880000	93712000	100170000	235350000	114740000	120610000	181840000	101180000	80663000	17978	2172	17034	109661;109662;109663;109664	147916;147917;147918;147919;147920;147921;147922;147923;147924	147922			9	
GDVTAEEAAGASPAK	1	Unmodified	1372.647	0.64703797	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.22	8	1			5					2	3	5	4	24.461	21.395	2;3	5.2307E-66	18491	160511_QHF_FH_JSI12i_1	237.49	220.06			0.96763	1.0003	10.675	14	0	Median	1.2169	1.0154	3.6697	2	0	Median	0.82819	0.95873	4.5155	3	0	Median	1.0126	1.0142	13.606	5	0	Median	0.82119	0.84583	14.084	4	0	Linear	1870600000	972080000	898530000	454830000	206700000	248130000	425110000	258120000	166990000	548770000	278790000	269980000	441900000	228480000	213430000	17979	1639	17035	109665;109666;109667;109668;109669;109670;109671;109672;109673;109674;109675;109676;109677;109678	147925;147926;147927;147928;147929;147930;147931;147932;147933;147934;147935;147936;147937;147938;147939;147940;147941;147942	147929			17	
GDVTAQIALQPALK	1	Unmodified	1423.8035	0.80347903	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	64.428	63.823	2;3	1.9961E-21	58208	160511_QHF_FH_JSI12i_1	175.49	170.18			0.96341	0.926	13.74	9	2	Median	1.0017	0.82806	10.954	2	0	Median	0.81144	0.95457	8.547	2	0	Median	0.9695	0.926	16.024	3	2	Median	1.0427	1.0836	8.3268	2	0	Median	499620000	257620000	242000000	69021000	34194000	34827000	146360000	79592000	66773000	157060000	80432000	76625000	127180000	63404000	63772000	17980	807	17036	109679;109680;109681;109682;109683;109684;109685;109686;109687	147943;147944;147945;147946;147947;147948;147949;147950;147951;147952;147953;147954	147949			11	
GDVTITNDGATILK	1	Unmodified	1416.746	0.74602373	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.86	4.36			2		2	3				1	3	1	2	62.899	55.729	2	1.3981E-16	28978	160513_QHF_FH_JSI11Kac_3	140.39	94.233			0.81089	0.91971	25.122	7	2	Median	1.2287	1.0012	NaN	1	0	Median	0.73318	0.84748	7.8753	3	1	Median	0.94822	0.91971	NaN	1	0	Median	1.1136	1.2072	48.954	2	1	Median	79650000	39424000	40226000	20215000	7642200	12572000	40054000	21937000	18117000	7464700	4282300	3182400	11917000	5563000	6354000	17981	1722	17037	109688;109689;109690;109691;109692;109693;109694	147955;147956;147957;147958;147959;147960;147961;147962	147957			8	
GDVTLTFLPLSFWGK	1	Unmodified	1679.8923	0.89229404	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	2	2	1	3	99.685	94.26	2	3.502E-88	50693	160513_QHF_FH_JSI11Kac_6	241.92	199.92			0.78613	0.7733	28.426	8	4	Median	0.86251	0.72833	33.404	2	1	Median	0.69491	0.83341	35.683	2	1	Median	1.0676	1.0269	NaN	1	0	Median	0.80298	0.8769	34.98	3	2	Plateau	1158800000	634030000	524760000	231620000	114680000	116940000	257710000	134480000	123230000	269640000	130320000	139310000	399820000	254550000	145270000	17982	3173	17038	109695;109696;109697;109698;109699;109700;109701;109702	147963;147964;147965;147966;147967;147968;147969;147970;147971	147965			9	
GDVVHFLLVK	1	Unmodified	1125.6546	0.65462995	3520	Q8N3P4	VPS8	Vacuolar protein sorting-associated protein 8 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		76.461	67.497	3	1.6965E-05	36844	160513_QHF_FH_JSI11Kac_6	100.48	87.9			2.076	1.8958	24.237	2	1	Median	2.6125	2.2502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6497	1.5972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21235000	8350500	12885000	12749000	5332000	7416600	0	0	0	8486700	3018500	5468200	0	0	0	17983	3520	17039	109703;109704	147972;147973	147972			2	
GDVVIVLTGWRPGSGFTNTMR	0	Oxidation (M)	2278.1528	0.15283561	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			82.597	77.004	3	1.3474E-05	42648	160513_QHF_FH_JSI10Kac_6	74.662	60.202			0.80201	0.96535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80201	0.96535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64015000	37097000	26919000	0	0	0	64015000	37097000	26919000	0	0	0	0	0	0	17984	1055	17040	109705	147974	147974		679	1	
GDVVIVLTGWRPGSGFTNTMR	0	Unmodified	2262.1579	0.15792099	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			84.819	79.152	2;3	1.0614E-08	44255	160513_QHF_FH_JSI10Kac_6	121.18	84.737			1.047	1.254	37.923	2	1	Median	NaN	NaN	NaN	0	0	Median	1.047	1.254	37.923	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	378960000	193670000	185280000	0	0	0	378960000	193670000	185280000	0	0	0	0	0	0	17985	1055	17040	109706;109707	147975;147976;147977	147976			3	
GDVVLQSDHVIETLTK	1	Unmodified	1752.9258	0.92577901	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	70.572	69.508	2;3	8.8083E-06	59968	160511_QHF_FH_JSI12i_2	138.21	114.36			0.71	0.76983	38.94	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1003	1.104	NaN	1	0	Median	0.56812	0.62477	29.527	2	0	Median	256420000	134980000	121440000	0	0	0	0	0	0	131300000	59498000	71807000	125120000	75478000	49637000	17986	100	17041	109708;109709;109710;109711	147978;147979;147980;147981;147982	147980			5	
GDVVNQDDLYQALASGK	1	Unmodified	1791.8639	0.86390703	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	73.414	72.92	2;3	1.2695E-97	66443	160511_QHF_FH_JSI12i_1	254.45	221.92			0.96095	0.95277	20.303	7	0	Median	1.3135	1.0606	23.553	2	0	Median	0.6925	0.79188	30.348	2	0	Median	0.9597	0.93901	2.0576	2	0	Median	0.99804	1.0458	NaN	1	0	Median	1248800000	620520000	628310000	272580000	130800000	141780000	340280000	188620000	151650000	330560000	160230000	170330000	305410000	140860000	164550000	17987	5249	17042	109712;109713;109714;109715;109716;109717;109718;109719;109720	147983;147984;147985;147986;147987;147988;147989;147990;147991;147992;147993;147994;147995;147996;147997;147998;147999	147988			16	
GDVVVSLPK	1	Unmodified	912.52803	0.52803245	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	50.78	46.37	2	8.1577E-05	40701	160511_QHF_FH_JSI9i_1	95.358	45.232			0.67593	0.69981	40.602	7	3	Median	0.6596	0.54067	NaN	1	0	Median	0.61462	0.72874	35.972	2	1	Median	0.81476	0.78471	45.561	2	1	Median	0.99419	1.0516	57.59	2	1	Median	700200000	432610000	267590000	138430000	75115000	63317000	184110000	121860000	62252000	205290000	138900000	66388000	172370000	96732000	75633000	17988	2286	17043	109721;109722;109723;109724;109725;109726;109727;109728	148000;148001;148002;148003;148004;148005;148006;148007;148008;148009;148010	148006			11	
GDWPGVVLSMER	0	Unmodified	1344.6496	0.64962092	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	79.536	78.959	2	9.5302E-05	68682	160511_QHF_FH_JSI12i_3	90.685	85.204			1.2227	1.1702	9.3135	6	1	Median	1.2258	1.0504	NaN	1	0	Median	0.888	1.0861	NaN	1	0	Median	1.329	1.2605	5.1953	2	1	Median	1.1447	1.2108	10.132	2	0	Median	255020000	113180000	141840000	20844000	7726200	13118000	38850000	21559000	17291000	90430000	37091000	53339000	104890000	46806000	58088000	17989	2806	17044	109729;109730;109731;109732;109733;109734	148011;148012;148013;148014;148015;148016;148017;148018;148019;148020;148021	148021			11	
GDWSQFTLWQQGR	0	Unmodified	1607.7481	0.74808942	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.65		2	4						5	3	3	3	2	82.745	78.538	2	7.7048E-172	38931	160513_QHF_FH_JSI12Kac_6	311.02	284.13			1.0156	1.0486	9.5454	11	3	Median	1.3495	1.1646	4.8829	3	1	Median	0.89088	1.0486	10.167	3	0	Median	1.0213	0.96715	7.1289	3	2	Median	0.94796	0.96015	6.245	2	0	Median	1302300000	647730000	654610000	173240000	75697000	97541000	366620000	192380000	174240000	424130000	201550000	222580000	338350000	178110000	160250000	17990	2307	17045	109735;109736;109737;109738;109739;109740;109741;109742;109743;109744;109745	148022;148023;148024;148025;148026;148027;148028;148029;148030;148031;148032;148033;148034;148035;148036;148037	148035			14	
GDWSVGAPGGVQEITYTVPADK	1	Unmodified	2246.0855	0.085527129	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	78.93	78.444	2;3	1.5031E-13	71466	160511_QHF_FH_JSI12i_1	125.67	95.983			1.0968	0.98952	29.008	5	3	Median	1.2282	0.98952	NaN	1	1	Median	0.6487	0.73741	NaN	1	0	Median	0.82592	0.80976	NaN	1	1	Median	1.2826	1.3152	22.156	2	1	Median	128770000	65281000	63488000	12530000	4261900	8268000	24600000	14318000	10282000	26420000	15089000	11331000	65221000	31613000	33608000	17991	4118	17046	109746;109747;109748;109749;109750	148038;148039;148040;148041;148042;148043;148044;148045	148041			8	
GDYAPILQK	1	Unmodified	1003.5338	0.53384611	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	40.876	40.405	2	0.00083343	36595	160511_QHF_FH_JSI12i_1	73.26	57.821			0.94824	0.95118	7.0226	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0334	0.99961	NaN	1	1	Median	0.8701	0.9051	NaN	1	0	Median	363530000	190870000	172660000	0	0	0	0	0	0	211130000	99231000	111900000	152400000	91641000	60757000	17992	5119	17047	109751;109752	148046;148047	148047			2	
GDYDVTVPK	1	Unmodified	992.48148	0.48147619	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	42.846	33.806	2	0.00080498	19202	160513_QHF_FH_JSI11Kac_3	90.657	64.92			0.74921	0.76591	44.304	4	3	Median	NaN	NaN	NaN	0	0	Median	0.34517	0.39559	NaN	1	1	Median	0.932	0.89762	33.642	2	2	Median	0.76764	0.82903	NaN	1	0	Median	11104000	6069500	5034100	0	0	0	1636500	1153500	483000	6829800	3546200	3283500	2637300	1369700	1267500	17993	2286	17048	109753;109754;109755;109756	148048;148049;148050;148051	148049			4	
GDYDVVINDYEK	1	Unmodified	1428.6409	0.64088996	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		54.252	53.847	2	7.6975E-06	48847	160511_QHF_FH_JSI11i_1	124.1	116.72			0.74634	0.79359	21.68	2	2	Median	NaN	NaN	NaN	0	0	Median	0.79502	0.92507	NaN	1	1	Median	0.70064	0.6808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80230000	43784000	36446000	0	0	0	39519000	21890000	17628000	40711000	21894000	18817000	0	0	0	17994	4159	17049	109757;109758	148052;148053	148052			2	
GDYFRYLSEVASGDNK	1	Unmodified	1819.8377	0.83769228	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			77.079	75.663	3	0.0001448	63467	160511_QHF_FH_JSI10i_3	79.022	62.337			0.17055	0.20493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17055	0.20493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7791300	6735400	1055900	0	0	0	7791300	6735400	1055900	0	0	0	0	0	0	17995	1384	17050	109759	148054	148054			1	
GDYLAVVLATQGHTQVLIHQLSR	0	Unmodified	2518.3656	0.36560558	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.408	80.707	4	3.2124E-06	45321	160513_QHF_FH_JSI10Kac_6	117.62	102.49			0.61659	0.74013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61659	0.74013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	493100000	340210000	152890000	0	0	0	493100000	340210000	152890000	0	0	0	0	0	0	17996	2496	17051	109760	148055	148055			1	
GDYPLEAVR	0	Unmodified	1018.5084	0.50835964	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.15	6	4	2			3	3	3		4	6	6	5	44.9	40.121	2	1.0171E-32	21783	160513_QHF_FH_JSI10Kac_4	194.9	177.05			0.95939	0.99886	6.847	21	3	Median	1.2584	1.0421	7.7843	4	1	Median	0.84249	1.0041	2.0908	6	1	Median	0.991	1.0973	7.9789	6	0	Linear	0.95798	0.99588	7.9551	5	1	Median	27085000000	13167000000	13918000000	5147800000	2175600000	2972200000	7497900000	3915200000	3582700000	7662600000	3689800000	3972800000	6776400000	3386300000	3390100000	17997	1055	17052	109761;109762;109763;109764;109765;109766;109767;109768;109769;109770;109771;109772;109773;109774;109775;109776;109777;109778;109779;109780;109781	148056;148057;148058;148059;148060;148061;148062;148063;148064;148065;148066;148067;148068;148069;148070;148071;148072;148073;148074;148075;148076;148077;148078;148079;148080;148081;148082;148083;148084;148085;148086;148087;148088;148089	148066			34	
GDYPQAMK	1	Unmodified	908.4062	0.40620276	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	19.372	15.954	2	0.0012584	13432	160511_QHF_FH_JSI11i_1	91.906	80.001			1.0395	1.04	8.1192	7	0	Median	1.4765	1.1679	NaN	1	0	Median	0.87074	1.0067	4.6055	2	0	Median	1.1435	1.102	12.588	2	0	Median	1.014	1.0906	6.7592	2	0	Median	4529500000	2097000000	2432500000	1027800000	330830000	697010000	1223400000	649900000	573490000	1081900000	507470000	574450000	1196400000	608820000	587570000	17998	1386	17053	109782;109783;109784;109785;109786;109787;109788	148090;148091;148092;148093;148094;148095	148090			6	
GDYPQAMK	1	Oxidation (M)	924.40112	0.40111738	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	12.903	12.508	2	0.010593	13477	160511_QHF_FH_JSI11i_1	60.76	47.772			1.2765	1.2688	37.108	6	0	Median	1.3288	1.0808	NaN	1	0	Median	1.0512	1.2581	NaN	1	0	Median	1.9604	1.887	65.278	2	0	Median	1.2765	1.3272	5.1682	2	0	Median	1091900000	439600000	652250000	271710000	119180000	152530000	129230000	64645000	64587000	325680000	81809000	243870000	365230000	173970000	191260000	17999	1386	17053	109789;109790;109791;109792;109793;109794	148096;148097;148098;148099;148100;148101;148102;148103	148096		1036	8	
GDYPQAMKHYTEAIK	2	Acetyl (K)	1792.8454	0.8454202	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								4			1	3		65.943	55.104	2;3	0.0072976	27798	160513_QHF_FH_JSI10Kac_5	53.924	45.564			0.81102	0.79629	328.71	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81102	0.79629	328.71	2	2	Median	NaN	NaN	NaN	0	0	Median	21980000	14392000	7588900	0	0	0	2942000	0	2942000	19038000	14392000	4646900	0	0	0	18000	1386	17054	109795;109796;109797;109798	148104;148105;148106;148107	148107	1335		4	
GDYYEAHQMYRTLFFR	0	Unmodified	2095.9574	0.95743026	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		97.775	97.563	3	0.0025535	88562	160511_QHF_FH_JSI11i_1	53.995	45.394			0.15243	0.14629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15243	0.14629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31926000	28113000	3813200	0	0	0	0	0	0	31926000	28113000	3813200	0	0	0	18001	3231	17055	109799	148108	148108			1	
GEAAAERPGEAAVASSPSK	1	Unmodified	1783.8701	0.87005504	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.34	4.91	9	8	6			2	3	1		6	6	9	8	19.294	17.343	2;3	2.4471E-43	14882	160511_QHF_FH_JSI12i_1	175.32	151.64			1.0186	0.99113	31.019	28	3	Median	1.0588	0.87874	27.549	6	2	Median	0.68611	0.82342	9.4001	6	0	Median	1.0841	1.0792	46.69	8	1	Median	1.1132	1.1443	11.921	8	0	Median	8322900000	4240000000	4082900000	1393500000	667510000	725950000	1754200000	920180000	834000000	2971600000	1669600000	1302000000	2203600000	982670000	1220900000	18002	1329	17056	109800;109801;109802;109803;109804;109805;109806;109807;109808;109809;109810;109811;109812;109813;109814;109815;109816;109817;109818;109819;109820;109821;109822;109823;109824;109825;109826;109827;109828	148109;148110;148111;148112;148113;148114;148115;148116;148117;148118;148119;148120;148121;148122;148123;148124;148125;148126;148127;148128;148129;148130;148131;148132;148133;148134;148135;148136;148137;148138;148139;148140;148141;148142;148143;148144;148145;148146;148147;148148;148149;148150;148151;148152;148153;148154;148155;148156;148157	148124			49	
GEAAASQLILYHYPELK	1	Unmodified	1901.9887	0.98871362	2965	Q5TC12	ATPAF1	ATP synthase mitochondrial F1 complex assembly factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.624	71.746	3	1.0738E-11	62862	160511_QHF_FH_JSI11i_2	151.04	144.09			1.1328	1.0757	10.963	4	0	Median	1.1887	0.99615	NaN	1	0	Median	0.82057	1.024	NaN	1	0	Median	1.1189	1.1299	NaN	1	0	Median	1.1469	1.2688	NaN	1	0	Median	392950000	185690000	207250000	73542000	32656000	40886000	103620000	54135000	49481000	113800000	52084000	61717000	101990000	46817000	55169000	18003	2965	17057	109829;109830;109831;109832	148158;148159;148160;148161;148162;148163;148164	148162			7	
GEAAPGPAPPAPEATPPPASAAGK	1	Unmodified	2108.0538	0.05383307	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.93	42.302	2;3	9.9418E-05	38210	160511_QHF_FH_JSI11i_1	58.079	44.399			0.98381	1.0358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98381	1.0358	NaN	1	1	Median	42457000	21200000	21257000	0	0	0	0	0	0	0	0	0	42457000	21200000	21257000	18004	4984	17058	109833;109834	148165;148166	148165			2	
GEADAMSLDGGYLYIAGK	1	Unmodified	1829.8506	0.85056516	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	81.478	81.071	2	5.8819E-38	73827	160511_QHF_FH_JSI12i_1	239.19	213.07		+	0.80884	0.83935	19.293	5	4	Median	0.80884	0.68187	NaN	1	0	Median	0.85709	1.0083	8.125	2	2	Median	0.72797	0.70202	NaN	1	1	Median	0.80176	0.83935	NaN	1	1	Median	301030000	177990000	123030000	36591000	25977000	10614000	139510000	77474000	62040000	48157000	26676000	21481000	76768000	47868000	28901000	18005	66	17059	109835;109836;109837;109838;109839	148167;148168;148169;148170;148171	148168			5	
GEADILAALK	1	Unmodified	999.56006	0.56006086	2322	Q12899	TRIM26	Tripartite motif-containing protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	3	1	1	70.141	69.599	2	4.0024E-05	63294	160511_QHF_FH_JSI11i_1	94.85	33.94			1.1281	1.1316	35.721	6	2	Median	0.96397	0.78495	NaN	1	0	Median	1.358	1.6005	48.545	3	2	Median	1.094	1.0496	NaN	1	0	Median	1.1632	1.2199	NaN	1	0	Median	155270000	75632000	79634000	18380000	8593300	9786800	74121000	39476000	34645000	33148000	15747000	17400000	29617000	11816000	17802000	18006	2322	17060	109840;109841;109842;109843;109844;109845	148172;148173;148174;148175;148176;148177	148172			6	
GEADRDTYR	0	Unmodified	1081.4789	0.47885043	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	5.4271	5.1113	2	0.00063971	3082	160511_QHF_FH_JSI11i_3	94.309	60.221			0.90385	0.87195	18.648	5	0	Median	1.3781	1.1846	NaN	1	0	Median	0.62178	0.74196	NaN	1	0	Median	0.85576	0.82941	7.0734	2	0	Median	0.90385	0.98411	NaN	1	0	Median	309000000	167030000	141970000	43785000	22387000	21398000	64286000	36559000	27727000	163090000	89287000	73803000	37840000	18797000	19043000	18007	1595	17061	109846;109847;109848;109849;109850	148178;148179	148178			2	
GEADRDTYRR	0	Unmodified	1237.58	0.57996145	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.4501	4.9508	3	0.046427	2884	160511_QHF_FH_JSI9i_3	30.55	21.017			0.88743	0.7376	NaN	1	0	Median	0.88743	0.7376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100230000	45587000	54643000	100230000	45587000	54643000	0	0	0	0	0	0	0	0	0	18008	1595	17062	109851	148180	148180			1	
GEAEALSR	0	Unmodified	831.40865	0.4086456	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	6									1	2	2	1	9.2357	8.9315	2	0.0061684	6556	160511_QHF_FH_JSI10i_1	72.038	29.038			1.1691	1.1327	21.728	6	2	Median	1.491	1.2365	NaN	1	0	Median	0.80141	0.9522	12.149	2	1	Median	1.2732	1.2455	30.903	2	1	Median	1.3458	1.3936	NaN	1	0	Median	791760000	340080000	451690000	141790000	50861000	90932000	248730000	129400000	119320000	231580000	91737000	139840000	169670000	68074000	101590000	18009	4378	17063	109852;109853;109854;109855;109856;109857	148181;148182;148183	148182			3	
GEAEDILETEK	1	Unmodified	1232.5772	0.57722707	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	38.976	38.37	2	1.9754E-05	34768	160511_QHF_FH_JSI12i_1	103.22	89.843			0.79195	0.85105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79195	0.85105	NaN	1	0	Median	43632000	20797000	22836000	0	0	0	0	0	0	0	0	0	43632000	20797000	22836000	18010	4843	17064	109858;109859	148184;148185;148186	148185			3	
GEAEVGGGGAAGDK	1	Unmodified	1173.5262	0.52619455	5022	Q9NV56	MRGBP	MRG/MORF4L-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	8.2731	7.9129	2	5.9823E-05	5827	160511_QHF_FH_JSI10i_1	74.237	50.714			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9975400	9975400	0	0	0	0	0	0	0	0	0	0	9975400	9975400	0	18011	5022	17065	109860;109861;109862	148187;148188;148189	148188			3	
GEAGQNLLEMMACDR	0	Unmodified	1693.7222	0.72221029	1685;31	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	0				By MS/MS	3	0			1										1	77.395	77.128	2	8.869E-05	66972	160511_QHF_FH_JSI12i_3	73.927	60.158			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18012	1685;31	17066	109863	148190	148190			1	
GEAGVPAEFSIWTR	0	Unmodified	1518.7467	0.74669243	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.58	1	4	1					1		1	1	3	2	80.501	78.466	2	5.3764E-15	68685	160511_QHF_FH_JSI12i_2	164.9	164.9			0.9631	0.98992	13.87	7	1	Median	1.1694	0.98992	NaN	1	0	Median	0.76005	0.91177	NaN	1	0	Median	0.9631	0.92434	18.549	3	1	Median	0.96598	1.0576	2.7138	2	0	Median	565230000	306300000	258930000	91045000	42423000	48622000	118670000	70693000	47976000	165430000	95486000	69943000	190080000	97695000	92389000	18013	512	17067	109864;109865;109866;109867;109868;109869;109870	148191;148192;148193;148194;148195;148196;148197;148198;148199;148200;148201	148193			11	
GEAHLAVNDFELAR	0	Unmodified	1540.7634	0.76340513	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.083	55.727	3	0.0039131	47754	160511_QHF_FH_JSI12i_2	36.638	30.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18014	2193	17068	109871	148202	148202			1	
GEAIEAILAALEVVSEPFR	0	Unmodified	2013.0783	0.078256906	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	103.33	95.473	2;3	1.0025E-156	57673	160513_QHF_FH_JSI10Kac_6	278.82	248.39			0.89832	1.0776	7.4497	5	0	Median	1.3107	1.1278	3.468	2	0	Median	0.89641	1.0744	0.42425	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88249	0.94501	NaN	1	0	Median	1234900000	644160000	590750000	366370000	167990000	198380000	781470000	428710000	352770000	0	0	0	87058000	47463000	39595000	18015	2370	17069	109872;109873;109874;109875;109876	148203;148204;148205;148206;148207;148208	148208			6	
GEALSALDSK	1	Unmodified	989.50294	0.50293991	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	33.949	29.815	2	7.4614E-10	25840	160511_QHF_FH_JSI9i_1	155.42	100.87			1.0186	0.98564	20.566	7	2	Median	1.5471	1.268	NaN	1	0	Median	0.92297	1.1066	36.223	2	2	Median	1.0006	0.9755	1.4624	2	0	Median	1.1055	1.16	26.01	2	0	Median	2350900000	1075000000	1275900000	593810000	216780000	377030000	678770000	292730000	386040000	500560000	256830000	243730000	577760000	308630000	269130000	18016	520	17070	109877;109878;109879;109880;109881;109882;109883;109884	148209;148210;148211;148212;148213;148214;148215;148216;148217;148218;148219;148220;148221	148218			13	
GEASSSNPATPIK	1	Unmodified	1257.6201	0.62009493	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.092	15.624	2	3.3224E-07	13177	160511_QHF_FH_JSI10i_1	136.81	116.11			1.0929	1.0303	11.912	4	0	Median	1.3232	1.0691	NaN	1	0	Median	0.83841	0.99289	NaN	1	0	Median	1.0078	0.9595	NaN	1	0	Median	1.1852	1.2543	NaN	1	0	Median	192940000	103310000	89634000	49820000	22431000	27389000	62311000	37733000	24578000	38082000	21245000	16837000	42731000	21901000	20830000	18017	2269	17071	109885;109886;109887;109888	148222;148223;148224;148225;148226;148227;148228	148226			7	
GEATVSFDDPPSAK	1	Unmodified	1419.6518	0.65178899	1442;3889	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	5.48	8	1	3		4	5				4	5	6	6	42.816	38.6	2;3	3.3564E-52	21505	160513_QHF_FH_JSI11Kac_3	184.03	130.34			1.0378	0.99403	21.862	20	4	Median	0.92597	0.75128	15.416	4	2	Median	0.79694	0.92726	7.9334	5	0	Median	1.0318	1.0345	7.5489	5	1	Plateau	1.1576	1.254	18.487	6	1	Median	6117300000	3220000000	2897300000	1327300000	702490000	624780000	1543400000	888460000	654900000	1565900000	713160000	852740000	1680700000	915880000	764850000	18018	1442;3889	17072	109889;109890;109891;109892;109893;109894;109895;109896;109897;109898;109899;109900;109901;109902;109903;109904;109905;109906;109907;109908;109909	148229;148230;148231;148232;148233;148234;148235;148236;148237;148238;148239;148240;148241;148242;148243;148244;148245;148246;148247;148248;148249;148250;148251;148252;148253;148254;148255;148256;148257;148258;148259;148260;148261;148262;148263;148264	148245			36	
GEAVGSITQPLPSSYLIIR	0	Unmodified	2000.0942	0.094241321	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	90.838	90.361	2	4.2645E-05	81991	160511_QHF_FH_JSI10i_1	100.55	90.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18019	4560	17073	109910;109911	148265;148266	148266			2	
GEAVGVHCALGFGR	0	Unmodified	1428.6932	0.69321707	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.483	42.483	3	0.02066	37510	160511_QHF_FH_JSI11i_3	48.229	40.318			0.80557	0.7699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80557	0.7699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42063000	26720000	15343000	0	0	0	0	0	0	42063000	26720000	15343000	0	0	0	18020	4473	17074	109912	148267	148267			0	
GEAVLGTHK	1	Unmodified	910.48723	0.48723027	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	9.2226	8.8736	2	5.2404E-05	6642	160511_QHF_FH_JSI12i_2	99.802	52.735			1.0758	1.1905	8.4976	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0113	1.2643	NaN	1	0	Median	1.1443	1.1211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83103000	41055000	42048000	0	0	0	41388000	20622000	20766000	41715000	20433000	21282000	0	0	0	18021	4525	17075	109913;109914;109915	148268;148269	148268			1	
GEAVLRPGLDAEPELSPEEQR	0	Unmodified	2291.1394	0.13935361	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	58.163	57.628	3	6.4617E-18	51259	160511_QHF_FH_JSI11i_3	147.21	137.8			0.98513	0.96637	7.781	4	0	Median	1.2513	1.0616	NaN	1	0	Median	0.73288	0.87884	NaN	1	0	Median	0.99961	0.95438	NaN	1	0	Median	0.97087	0.97851	NaN	1	0	Median	619130000	327340000	291790000	139440000	61227000	78212000	150880000	91536000	59340000	246520000	133680000	112840000	82296000	40902000	41394000	18022	4372	17076	109916;109917;109918;109919	148270;148271;148272;148273;148274;148275;148276	148272			6	
GEAVQEELLK	1	Unmodified	1114.587	0.58700389	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	6	1					1				1		1		41.396	40.184	2	0.00076504	35604	160511_QHF_FH_JSI9i_1	83.883	60.563			0.51458	0.41422	NaN	1	1	Median	0.51458	0.41422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60563000	36029000	24535000	60563000	36029000	24535000	0	0	0	0	0	0	0	0	0	18023	2485	17077	109920;109921	148277;148278	148278			2	
GEDEEENNLEVR	0	Unmodified	1431.6114	0.61138074	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	26.484	21.477	2	2.6604E-247	18831	160511_QHF_FH_JSI10i_1	359.74	338.77			1.0241	1.0814	4.5732	10	1	Median	1.2324	1.0099	NaN	1	0	Median	0.92357	1.0838	4.4107	3	0	Median	1.1527	1.141	4.8778	3	1	Median	1.0019	1.079	1.1405	3	0	Plateau	1974200000	954350000	1019800000	452880000	228320000	224560000	405130000	201940000	203180000	463350000	208580000	254770000	652820000	315510000	337310000	18024	816	17078	109922;109923;109924;109925;109926;109927;109928;109929;109930;109931	148279;148280;148281;148282;148283;148284;148285;148286;148287;148288;148289;148290;148291;148292;148293;148294;148295;148296;148297;148298	148289			20	
GEDEELLTVNPESNSLALVYR	0	Unmodified	2347.1543	0.15433498	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	91.731	91.304	3	0.00041447	83083	160511_QHF_FH_JSI12i_1	40.689	35.822			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18025	3536	17079	109932	148299	148299			1	
GEDFPANNIVK	1	Unmodified	1202.5932	0.5931519	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	49.719	44.516	2	4.8244E-13	39756	160511_QHF_FH_JSI11i_1	147.2	127.41			1.0579	1.1024	14.03	8	0	Plateau	1.1476	0.95357	NaN	1	0	Median	0.81278	0.96373	15.6	2	0	Median	1.1951	1.1716	18.181	3	0	Plateau	1.0593	1.1458	9.8513	2	0	Median	7381300000	3586300000	3795000000	1633300000	676410000	956850000	1809000000	1033500000	775560000	1918300000	961310000	957010000	2020700000	915140000	1105500000	18026	1559	17080	109933;109934;109935;109936;109937;109938;109939;109940	148300;148301;148302;148303;148304;148305;148306;148307;148308;148309;148310;148311;148312;148313;148314	148300			15	
GEDFPANNIVKFLVGFTNK	2	Acetyl (K)	2151.1001	0.10005498	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		99.57	90.153	3	0.00046004	51728	160513_QHF_FH_JSI11Kac_6	90.22	73.914			1.8935	1.7379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8935	1.7379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58151000	30701000	27451000	0	0	0	0	0	0	58151000	30701000	27451000	0	0	0	18027	1559	17081	109941	148315	148315	1577		1	
GEDKDEGPVAEQVK	2	Unmodified	1499.7104	0.71036651	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	16.172	15.826	2	2.4766E-06	13338	160511_QHF_FH_JSI10i_1	91.858	74.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18028	3801	17082	109942;109943	148316;148317	148317			2	
GEDLTEEEDGGIIR	0	Unmodified	1531.7002	0.70019575	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	47.057	46.374	2	4.0595E-34	41987	160511_QHF_FH_JSI11i_1	243.13	205.05			1.1079	1.0693	8.5893	7	7	Median	1.1925	0.98743	7.6737	2	2	Median	0.87649	1.0322	5.0002	2	2	Median	1.1746	1.1519	8.3615	2	2	Median	1.0554	1.1267	NaN	1	1	Median	717020000	349020000	367990000	166450000	77537000	88912000	179230000	96124000	83104000	278410000	134020000	144390000	92934000	41344000	51590000	18029	2193	17083	109944;109945;109946;109947;109948;109949;109950	148318;148319;148320;148321;148322;148323;148324;148325;148326	148320			9	
GEDLTEEEDGGIIRR	0	Unmodified	1687.8013	0.80130678	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.615	3	8	2							2	3	4	4	39.149	38.446	2;3	1.0166E-11	34598	160511_QHF_FH_JSI11i_1	131.53	98.8			1.0324	1.0309	12.244	13	2	Median	1.172	1.0141	3.3126	2	0	Median	0.85732	1.0181	10.341	3	1	Plateau	1.1427	1.1204	11.451	4	0	Median	1.0065	1.0526	14.796	4	1	Median	1028300000	501670000	526600000	147210000	70496000	76718000	292760000	155480000	137270000	359300000	163180000	196120000	228990000	112510000	116480000	18030	2193	17084	109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963	148327;148328;148329;148330;148331;148332;148333;148334;148335;148336;148337;148338;148339;148340;148341;148342;148343	148328			17	
GEDNIDFMPTILSR	0	Unmodified	1606.7661	0.76610725	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	88.672	88.13	2	2.4021E-44	79999	160511_QHF_FH_JSI10i_1	247.13	211.72			0.87629	0.90033	8.9993	7	7	Median	0.93281	0.76786	NaN	1	1	Median	0.72348	0.87702	10.963	2	2	Median	0.92019	0.90944	6.5805	2	2	Median	0.86945	0.93878	5.9148	2	2	Median	563130000	308170000	254950000	62501000	30099000	32402000	170840000	96612000	74225000	177800000	94715000	83083000	151990000	86748000	65244000	18031	1410	17085	109964;109965;109966;109967;109968;109969;109970	148344;148345;148346;148347;148348;148349;148350	148347			7	
GEDQSELVTTVDK	1	Unmodified	1419.6729	0.67291837	3611	Q8NC56	LEMD2	LEM domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.67	5.19	2				1					1		1	1	37.364	36.453	2	0.00016796	32924	160511_QHF_FH_JSI12i_1	154.28	125.19			0.85045	0.77988	6.2177	2	2	Median	0.99888	0.81493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72407	0.74633	NaN	1	1	Median	204410000	122610000	81796000	102110000	56424000	45689000	0	0	0	0	0	0	102300000	66191000	36107000	18032	3611	17086	109971;109972;109973	148351;148352;148353;148354	148352			4	
GEDSEPVTSK	1	Unmodified	1047.472	0.47203371	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	8.2974	6.561	2	1.3856E-07	5440	160511_QHF_FH_JSI11i_1	120.33	108.92			1.0474	0.93635	10.989	5	1	Median	1.0653	0.87629	NaN	1	0	Median	0.71743	0.85931	NaN	1	0	Median	1.1207	1.0676	6.7361	2	1	Median	0.89782	0.93635	NaN	1	0	Median	318020000	184360000	133660000	75348000	43266000	32082000	77848000	49559000	28289000	89151000	48766000	40385000	75670000	42767000	32903000	18033	3570	17087	109974;109975;109976;109977;109978;109979;109980	148355;148356;148357;148358;148359;148360;148361;148362	148355			8	
GEDSVPDTVHHVVVPVNPK	1	Unmodified	2024.0327	0.032703697	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	48.466	47.835	3;4	5.1515E-34	40788	160511_QHF_FH_JSI12i_3	196.66	187.73			0.90046	0.91232	6.5852	7	0	Median	0.98641	0.8389	NaN	1	0	Median	0.66165	0.83347	NaN	1	0	Median	0.97495	0.95567	6.5649	2	0	Median	0.83074	0.91462	4.2924	3	0	Median	1972400000	1031000000	941380000	197940000	93747000	104190000	307410000	181560000	125850000	486620000	232860000	253760000	980440000	522870000	457580000	18034	3828	17088	109981;109982;109983;109984;109985;109986;109987	148363;148364;148365;148366;148367;148368;148369;148370;148371;148372;148373;148374;148375	148374			13	
GEDVPLTEQTVSQVLQSAK	1	Unmodified	2028.0375	0.037514303	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	1	3	87.665	87.271	2;3	1.9195E-08	79143	160511_QHF_FH_JSI10i_1	109.84	95.874			0.88564	0.84946	16.481	6	3	Median	1.0432	0.83263	NaN	1	0	Median	0.72059	0.82584	31.379	2	1	Median	0.90385	0.86663	NaN	1	1	Median	0.84921	0.89225	17.443	2	1	Median	155900000	88771000	67129000	25196000	13064000	12132000	56154000	39199000	16955000	37591000	18550000	19042000	36960000	17959000	19001000	18035	1966	17089	109988;109989;109990;109991;109992;109993;109994;109995	148376;148377;148378;148379;148380;148381;148382;148383;148384	148381			8	
GEEAFQMSEVDEESGLK	1	Unmodified	1883.8095	0.8094882	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	60.519	59.975	2	1.3412E-23	53271	160511_QHF_FH_JSI9i_1	132.47	118.22			1.0931	1.0832	7.316	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0602	1.0286	NaN	1	1	Median	1.1271	1.1407	NaN	1	0	Median	44662000	18743000	25919000	0	0	0	0	0	0	16100000	9176500	6923600	28562000	9566100	18996000	18036	2584	17090	109996;109997;109998;109999	148385;148386;148387;148388	148388			4	
GEEENMMMR	0	Unmodified	1125.4253	0.42529999	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.08	22.565	2	0.049663	19865	160511_QHF_FH_JSI12i_1	55.503	48.309			0.86847	0.90492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86847	0.90492	NaN	1	0	Median	38625000	19637000	18987000	0	0	0	0	0	0	0	0	0	38625000	19637000	18987000	18037	5301	17091	110000	148389	148389			0	
GEEGSDDDETENGPKPK	2	Unmodified	1802.7442	0.74424541	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	3.6	9					1				3	1	3	3	8.6997	7.5616	2;3	8.0257E-60	5675	160511_QHF_FH_JSI9i_1	192.86	175.05			0.93566	0.89089	21.311	9	5	Median	0.94378	0.77559	33.519	2	1	Median	0.70699	0.82831	NaN	1	0	Median	0.93566	0.89089	10.66	3	2	Median	0.95292	1.0134	26.35	3	2	Median	558690000	283230000	275460000	136350000	63919000	72433000	159800000	98575000	61224000	121160000	47172000	73986000	141390000	73567000	67819000	18038	3115	17092	110001;110002;110003;110004;110005;110006;110007;110008;110009;110010	148390;148391;148392;148393;148394;148395;148396;148397;148398;148399;148400;148401;148402;148403	148403			14	
GEEIIPR	0	Unmodified	812.43922	0.43921744	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	25.229	24.581	2	0.0040196	21925	160511_QHF_FH_JSI12i_1	100.74	38.027			0.98621	1.006	49.189	3	1	Median	0.54867	0.45138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1403	1.1044	NaN	1	0	Median	0.98621	1.006	NaN	1	0	Median	247260000	138640000	108620000	89773000	61743000	28030000	0	0	0	73934000	34428000	39506000	83553000	42467000	41086000	18039	4890	17093	110011;110012;110013	148404;148405;148406	148405			3	
GEEILSGAQR	0	Unmodified	1058.5356	0.53563702	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	2	2	2	22.948	22.409	2	2.6596E-09	19727	160511_QHF_FH_JSI12i_1	128.12	51.643			0.97413	1.0786	11.102	4	2	Median	1.4574	1.203	NaN	1	0	Median	0.96777	1.1441	NaN	1	1	Median	0.98053	0.94222	NaN	1	0	Median	0.96644	1.0168	NaN	1	1	Median	593400000	269460000	323940000	168470000	74466000	94001000	110360000	56612000	53752000	156850000	63423000	93427000	157720000	74955000	82763000	18040	1064	17094	110014;110015;110016;110017;110018;110019;110020	148407;148408;148409;148410;148411;148412;148413;148414;148415	148409			9	
GEEIPTQKPDQ	1	Unmodified	1240.5935	0.59354583	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	20.826	20.315	2	0.00023936	17698	160511_QHF_FH_JSI12i_1	107.21	98.247			0.91593	0.90164	16.248	5	5	Median	1.4596	1.19	NaN	1	1	Median	0.68705	0.8079	NaN	1	1	Median	0.91593	0.89549	NaN	1	1	Median	0.96963	1.0013	14.823	2	2	Median	371960000	187380000	184580000	83822000	36408000	47414000	73064000	41600000	31464000	85739000	41552000	44187000	129330000	67819000	61514000	18041	2535	17095	110021;110022;110023;110024;110025	148416;148417;148418;148419;148420	148418			5	
GEEIYSMDEGIR	0	Unmodified	1397.6133	0.613295	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.389	48.71	2	5.1789E-17	44222	160511_QHF_FH_JSI12i_1	168.74	160.81			0.9608	0.97514	6.2272	4	0	Median	1.1324	0.93847	NaN	1	0	Median	0.89695	1.0461	NaN	1	0	Median	1.0292	1.0132	NaN	1	0	Median	0.89275	0.91704	NaN	1	0	Median	643900000	336370000	307530000	160360000	78705000	81655000	155760000	80841000	74916000	193720000	99343000	94375000	134070000	77482000	56588000	18042	4193	17096	110026;110027;110028;110029	148421;148422;148423;148424;148425;148426;148427	148424			7	
GEELEQK	1	Unmodified	831.39741	0.39741221	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	7.219	6.9855	2	0.034837	4694	160511_QHF_FH_JSI11i_1	49.933	3.0976			1.1792	1.2012	19.781	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1056	1.2975	NaN	1	0	Median	1.2373	1.2012	NaN	1	0	Median	0.87314	0.89211	NaN	1	0	Median	244160000	118490000	125660000	0	0	0	88233000	41700000	46533000	89461000	41332000	48129000	66460000	35460000	31001000	18043	2320	17097	110030;110031;110032	148428	148428			1	
GEELGGGQDPVQLLSGFPR	0	Unmodified	1954.9749	0.97485447	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	92.167	92.133	2	3.1173E-16	81900	160511_QHF_FH_JSI9i_1	147.35	124.63			0.50086	0.56358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50086	0.56358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20530000	15264000	5266500	0	0	0	20530000	15264000	5266500	0	0	0	0	0	0	18044	2215	17098	110033;110034;110035	148429;148430;148431;148432	148432			4	
GEELLSPLNLEQAAYAR	0	Unmodified	1872.9581	0.95814177	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.589	88.149	2	4.1988E-06	80282	160511_QHF_FH_JSI12i_1	138.02	114.17			0.86769	0.90804	15.976	4	1	Median	0.90022	0.72252	NaN	1	0	Median	0.81619	0.95024	NaN	1	1	Median	1.0765	1.0526	NaN	1	0	Median	0.83634	0.8677	NaN	1	0	Median	281770000	147080000	134690000	39665000	19585000	20080000	97722000	50864000	46858000	85564000	41257000	44307000	58823000	35376000	23446000	18045	100	17099	110036;110037;110038;110039	148433;148434;148435;148436;148437;148438	148434			6	
GEELSCEER	0	Unmodified	1107.4503	0.45025241	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.462	9.1271	2	4.1087E-09	8310	160511_QHF_FH_JSI10i_1	154.49	129.59			1.0154	1.2139	15.601	7	0	Median	1.6068	1.3275	NaN	1	0	Median	0.95385	1.1325	9.8162	2	0	Median	0.93868	0.92393	7.7086	2	0	Median	1.1771	1.2572	2.7731	2	0	Median	949520000	450490000	499030000	153830000	50699000	103130000	303620000	167650000	135970000	233440000	114050000	119380000	258630000	118090000	140540000	18046	1385	17100	110040;110041;110042;110043;110044;110045;110046	148439;148440;148441;148442;148443;148444;148445;148446;148447;148448;148449	148444			11	
GEENLMDAQVK	1	Oxidation (M)	1248.5656	0.56561652	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	5.82	10				4	7				4	6	5	6	25.606	21.323	2	5.466E-13	17039	160511_QHF_FH_JSI9i_1	149.23	109.23			0.95924	0.95219	18.616	21	5	Median	1.3425	1.084	32.04	4	1	Median	0.78547	0.91613	12.388	6	3	Median	0.95924	0.92895	9.9646	5	0	Median	1.0015	1.0483	12.323	6	1	Median	1496000000	634120000	861870000	954420000	366000000	588420000	151910000	80570000	71343000	167780000	78647000	89133000	221870000	108900000	112970000	18047	1721	17101	110047;110048;110049;110050;110051;110052;110053;110054;110055;110056;110057;110058;110059;110060;110061;110062;110063;110064;110065;110066;110067	148450;148451;148452;148453;148454;148455;148456;148457;148458;148459;148460;148461;148462;148463;148464;148465;148466;148467;148468;148469;148470;148471;148472;148473;148474;148475;148476;148477;148478;148479;148480;148481	148470		1396	32	
GEENLMDAQVK	1	Unmodified	1232.5707	0.5707019	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.38	4	3	1		2	3				1	6	3	3	37.227	34.048	2	3.0521E-38	30237	160511_QHF_FH_JSI10i_1	208.33	173.11			1.0139	1.0862	21.581	9	2	Median	1.2948	1.0862	NaN	1	0	Median	1.0599	1.2528	27.1	4	2	Median	1.0043	0.9837	1.7769	2	0	Median	0.9897	1.0726	10.481	2	0	Median	8674000000	4112000000	4562100000	1941300000	768600000	1172700000	2578800000	1407600000	1171200000	2185900000	935980000	1250000000	1968000000	999770000	968230000	18048	1721	17101	110068;110069;110070;110071;110072;110073;110074;110075;110076;110077;110078;110079;110080	148482;148483;148484;148485;148486;148487;148488;148489;148490;148491;148492;148493;148494;148495;148496;148497;148498;148499;148500;148501;148502;148503;148504;148505;148506;148507	148492			26	
GEETPVIVGSALCALEGRDPELGLK	1	Unmodified	2609.3371	0.33706714	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	101.13	101.03	3	3.1495E-42	89508	160511_QHF_FH_JSI10i_2	186.92	171.03			0.85537	0.92476	19.738	4	0	Median	NaN	NaN	NaN	0	0	Median	0.71725	0.89719	NaN	1	0	Median	0.78268	0.78661	NaN	1	0	Median	1.0286	1.0945	19.553	2	0	Median	1217900000	661650000	556250000	0	0	0	295150000	175930000	119220000	346260000	200720000	145550000	576480000	284990000	291490000	18049	1658	17102	110081;110082;110083;110084	148508;148509;148510;148511;148512	148511			5	
GEEVEAGAAK	1	Unmodified	959.45599	0.45598972	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	8.5427	8.1555	2	0.00048182	6023	160511_QHF_FH_JSI12i_1	73.233	39.437			0.91413	0.89095	15.959	3	0	Median	1.322	1.0947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91413	0.89095	NaN	1	0	Median	0.76971	0.79957	NaN	1	0	Median	1536600000	815960000	720660000	517800000	249520000	268280000	0	0	0	470480000	246840000	223640000	548350000	319600000	228750000	18050	2547	17103	110085;110086;110087	148513;148514	148513			2	
GEEVTILAQK	1	Unmodified	1086.5921	0.59208927	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		39.848	39.216	2	0.0028251	35188	160511_QHF_FH_JSI10i_1	57.55	24.51			0.68173	0.7611	19.242	3	0	Median	0.68173	0.55757	NaN	1	0	Median	0.6331	0.7611	NaN	1	0	Median	0.80527	0.79255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	289400000	181690000	107710000	47740000	29395000	18345000	126550000	87818000	38737000	115100000	64482000	50623000	0	0	0	18051	2253	17104	110088;110089;110090	148515;148516	148515			2	
GEEVTLSNPK	1	Unmodified	1072.5401	0.5400537	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	22.626	22.3	2	0.0033123	19657	160511_QHF_FH_JSI12i_1	70.1	47.36			1.1431	1.1307	5.4263	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2101	1.1749	NaN	1	1	Median	1.0797	1.0881	NaN	1	1	Median	30919000	14797000	16122000	0	0	0	0	0	0	13306000	7083500	6222700	17613000	7713800	9898900	18052	2554	17105	110091;110092;110093	148517;148518;148519	148518			3	
GEFDALQAR	0	Unmodified	1005.488	0.48795855	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.792	36.2	2	0.010108	32834	160511_QHF_FH_JSI12i_1	59.597	39.076			1.2806	1.3164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2806	1.3164	NaN	1	1	Median	96405000	48498000	47908000	0	0	0	0	0	0	0	0	0	96405000	48498000	47908000	18053	3248	17106	110094	148520	148520			1	
GEFDPGQDTYQHPPK	1	Unmodified	1714.7587	0.75871368	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	32.167	31.527	3	2.9454E-06	28208	160511_QHF_FH_JSI11i_1	125.5	122.94			1.0355	1.0516	4.4688	6	1	Median	1.2732	1.0931	1.4328	2	0	Median	0.87656	1.0373	NaN	1	1	Median	1.0232	1.0035	4.5523	2	0	Median	1.0176	1.0661	NaN	1	0	Median	835970000	408980000	426990000	195940000	88035000	107910000	216880000	118990000	97890000	224250000	113760000	110490000	198890000	88193000	110700000	18054	4315	17107	110095;110096;110097;110098;110099;110100	148521;148522;148523;148524;148525;148526;148527	148523			7	
GEFETGFEK	1	Unmodified	1042.4607	0.46074075	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	35.274	34.673	2	7.0493E-05	31392	160511_QHF_FH_JSI12i_1	96.331	26.507			1.0844	1.0379	35.481	5	2	Median	1.2631	1.0379	NaN	1	1	Median	1.0844	1.2496	NaN	1	0	Median	0.88092	0.86362	NaN	1	0	Median	1.1883	1.2157	63.681	2	1	Median	402950000	179850000	223100000	84662000	33821000	50840000	85722000	40701000	45021000	110270000	53253000	57013000	122300000	52080000	70221000	18055	1069;3467	17108	110101;110102;110103;110104;110105;110106	148528;148529;148530;148531;148532;148533;148534	148530			7	
GEFGDVMLGDYR	0	Unmodified	1357.5973	0.597251	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.414	66.84	2	0.00038822	58377	160511_QHF_FH_JSI11i_2	88.596	70.284			1.7511	1.7868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7511	1.7868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27901000	10106000	17795000	0	0	0	0	0	0	27901000	10106000	17795000	0	0	0	18056	1517	17109	110107	148535	148535			1	
GEFGDVMLGDYRGNK	1	Unmodified	1656.7566	0.75660519	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.397	55.397	3	0.038103	49118	160511_QHF_FH_JSI11i_3	34.967	19.149			2.925	2.7458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.925	2.7458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46229000	11953000	34276000	0	0	0	0	0	0	46229000	11953000	34276000	0	0	0	18057	1517	17110	110108	148536	148536			1	
GEFGGFGSVSGK	1	Unmodified	1127.5247	0.52473799	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.12		4	3				2	4		2	4	4	3	48.741	42.917	2	2.5219E-07	37029	160511_QHF_FH_JSI11i_2	112.13	77.318			0.94685	1.0174	13.818	12	0	Median	1.0789	0.91538	25.04	2	0	Median	0.84658	1.0086	1.181	4	0	Median	1.1725	1.1457	21.28	3	0	Median	1.024	1.1291	7.2689	3	0	Median	1629400000	772250000	857130000	47504000	23125000	24378000	356730000	189290000	167440000	579760000	250980000	328780000	645390000	308850000	336530000	18058	2283	17111	110109;110110;110111;110112;110113;110114;110115;110116;110117;110118;110119;110120;110121	148537;148538;148539;148540;148541;148542;148543;148544;148545;148546;148547;148548;148549	148544			13	
GEFGGFGSVTGK	1	Unmodified	1141.5404	0.54038805	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.93	4	5	4				2	4		4	5	5	5	52.176	47.863	2	6.9783E-19	24198	160513_QHF_FH_JSI10Kac_5	151.15	116.34			0.9749	1.0158	71.419	17	6	Median	1.1072	0.93312	70.895	3	2	Median	0.88274	1.0279	145.52	4	1	Median	0.9749	1.0032	28.312	5	1	Median	0.95405	1.0415	4.9178	5	2	Median	4425600000	2163600000	2262100000	784580000	303940000	480640000	915360000	601420000	313940000	1635300000	760870000	874390000	1090400000	497350000	593090000	18059	2741	17112	110122;110123;110124;110125;110126;110127;110128;110129;110130;110131;110132;110133;110134;110135;110136;110137;110138;110139;110140	148550;148551;148552;148553;148554;148555;148556;148557;148558;148559;148560;148561;148562;148563;148564;148565;148566;148567;148568;148569;148570;148571;148572;148573	148571			24	
GEFGVYLVSDGSSRPYR	0	Unmodified	1887.9115	0.91152593	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	68.287	59.466	3	0.0007613	32660	160513_QHF_FH_JSI10Kac_6	113.47	91.319			1.4797	1.6128	39.806	2	1	Median	NaN	NaN	NaN	0	0	Median	1.047	1.2172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0912	2.1371	NaN	1	0	Median	126760000	64542000	62220000	0	0	0	107320000	58609000	48714000	0	0	0	19438000	5932600	13506000	18060	497	17113	110141;110142	148574;148575	148575			2	
GEFKDEEETVTTK	2	Acetyl (K)	1553.7097	0.7096978	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		45.802	36.499	2	0.02523	20482	160513_QHF_FH_JSI11Kac_3	56.359	40.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1348000	1348000	0	0	0	0	0	0	0	1348000	1348000	0	0	0	0	18061	2558	17114	110143	148576	148576	2537		1	
GEFKDEEETVTTK	2	Unmodified	1511.6991	0.69913312	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		23.054	22.744	2	0.0061098	19812	160511_QHF_FH_JSI10i_1	97.551	74.175			0.38691	0.43685	57.359	2	2	Median	NaN	NaN	NaN	0	0	Median	0.23929	0.29119	NaN	1	1	Median	0.62559	0.65535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105890000	78494000	27392000	0	0	0	66312000	50279000	16033000	39574000	28215000	11359000	0	0	0	18062	2558	17114	110144;110145	148577;148578	148577			2	
GEFSASPMLK	1	Unmodified	1065.5165	0.51648149	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			2	2	3	1	44.889	44.041	2	8.9746E-07	39456	160511_QHF_FH_JSI10i_1	124.23	106.84			1.156	1.0528	11.53	7	3	Median	1.2823	1.0647	15.54	2	1	Median	0.80346	0.96479	12.351	2	1	Median	1.1687	1.1668	3.928	2	1	Median	0.90569	1.0047	NaN	1	0	Median	699310000	345350000	353960000	126950000	60627000	66320000	187300000	103200000	84099000	280690000	128700000	151990000	104370000	52820000	51550000	18063	5474	17115	110146;110147;110148;110149;110150;110151;110152;110153	148579;148580;148581;148582;148583;148584;148585	148581			7	
GEFTIETEGK	1	Unmodified	1109.5241	0.52406928	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	39.312	34.599	2	1.9788E-11	31023	160511_QHF_FH_JSI12i_1	152.34	109.09			1.1803	1.2236	12.752	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.2433	14.054	2	0	Median	1.254	1.2236	6.898	2	1	Median	1.2016	1.2762	23.449	2	0	Median	1125500000	535400000	590100000	0	0	0	315390000	165000000	150400000	344930000	144430000	200510000	465170000	225970000	239190000	18064	1519	17116	110154;110155;110156;110157;110158;110159	148586;148587;148588;148589;148590;148591;148592	148587			7	
GEFTNLQGVSAASSGR	0	Unmodified	1579.759	0.75904803	516	O75382	TRIM3	Tripartite motif-containing protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.908	44.517	2	1.4585E-27	38093	160511_QHF_FH_JSI12i_2	145.6	119.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18065	516	17117	110160	148593	148593			1	
GEFTYYEIQDNTGK	1	Unmodified	1663.7366	0.73658126	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	54.144	53.481	2	2.0047E-24	48648	160511_QHF_FH_JSI12i_1	221.09	199.84			1.0574	0.99437	12.34	4	4	Median	1.1711	0.97768	NaN	1	1	Median	0.70171	0.817	NaN	1	1	Median	1.1305	1.0937	NaN	1	1	Median	0.98891	1.0114	NaN	1	1	Median	293340000	152620000	140720000	79219000	38473000	40746000	69046000	43296000	25750000	78358000	35716000	42642000	66717000	35137000	31580000	18066	2752	17118	110161;110162;110163;110164;110165	148594;148595;148596;148597;148598;148599	148596			6	
GEFVTTVQQR	0	Unmodified	1163.5935	0.59348625	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.33	4	4	4			1	3	3	2	5	7	5	4	31.762	27.603	2	5.5807E-86	16922	160513_QHF_FH_JSI11Kac_4	251.3	227.35			0.98665	1.011	8.6137	20	2	Median	1.2692	1.0681	10.898	5	1	Median	0.83414	1.011	7.8799	6	1	Median	0.9834	0.97267	6.2521	5	0	Median	0.99608	1.0915	7.8665	4	0	Median	8130000000	4015900000	4114100000	1725400000	770800000	954570000	2150600000	1130900000	1019700000	2249600000	1111400000	1138300000	2004400000	1002800000	1001600000	18067	1503	17119	110166;110167;110168;110169;110170;110171;110172;110173;110174;110175;110176;110177;110178;110179;110180;110181;110182;110183;110184;110185;110186	148600;148601;148602;148603;148604;148605;148606;148607;148608;148609;148610;148611;148612;148613;148614;148615;148616;148617;148618;148619;148620;148621;148622;148623;148624;148625;148626;148627;148628;148629;148630;148631;148632;148633;148634;148635;148636;148637;148638;148639	148616			38	
GEFVTTVQQRGAAVIK	1	Unmodified	1702.9366	0.93661847	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.662	49.065	3	0.018826	40223	160511_QHF_FH_JSI9i_3	37.657	27.558			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18068	1503	17120	110187	148640	148640			1	
GEFYNEASNLQVAIR	0	Unmodified	1709.8373	0.83729835	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	68.626	67.731	2	4.5116E-40	59335	160511_QHF_FH_JSI11i_2	205.46	182.82			1.1364	1.0613	26.239	4	2	Median	1.1486	1.007	NaN	1	1	Median	1.312	1.5751	NaN	1	1	Median	1.1242	1.1186	NaN	1	0	Median	0.77922	0.84472	NaN	1	0	Median	129630000	62539000	67091000	33358000	15734000	17624000	26495000	9556100	16939000	44970000	22339000	22630000	24808000	14910000	9898000	18069	1687	17121	110188;110189;110190;110191;110192	148641;148642;148643;148644;148645;148646;148647	148646			7	
GEGAGPPPPLPPAQPGAEGGGDR	0	Unmodified	2079.9974	0.99738082	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	1	3	44.034	43.556	2	2.6515E-07	39221	160511_QHF_FH_JSI10i_1	91.032	68.499			0.87499	0.90613	30.758	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66114	0.72901	NaN	1	1	Median	1.158	1.1263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35623000	13959000	21663000	0	0	0	12376000	8144000	4232100	14789000	5815400	8973700	8457300	0	8457300	18070	2957;5035	17122	110193;110194;110195;110196;110197;110198;110199	148648;148649;148650;148651;148652;148653;148654	148652			7	
GEGALPTGK	1	Unmodified	828.43413	0.43413207	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		14.005	13.558	2	0.00023031	11046	160511_QHF_FH_JSI11i_1	84.615	47.056			0.80913	0.89687	15.703	3	0	Plateau	0.82764	0.67281	NaN	1	0	Median	0.79557	0.92098	NaN	1	0	Median	0.82291	0.79221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	913010000	420600000	492410000	295050000	130750000	164310000	311400000	150400000	161000000	306560000	139460000	167100000	0	0	0	18071	3323	17123	110200;110201;110202	148655;148656;148657;148658	148656			4	
GEGDAPFSEPGTTSTQRPSSPETATK	1	Unmodified	2634.2045	0.20453264	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.088	36.476	3	7.7637E-18	32776	160511_QHF_FH_JSI11i_1	110.9	104.81			1.0192	1.0884	12.457	4	0	Median	1.3914	1.1872	NaN	1	0	Median	0.98248	1.1525	NaN	1	0	Median	1.0574	1.0279	NaN	1	0	Median	0.88752	0.90284	NaN	1	0	Median	323500000	159040000	164460000	65622000	27172000	38450000	83506000	38500000	45006000	87352000	45064000	42287000	87021000	48308000	38712000	18072	5474	17124	110203;110204;110205;110206	148659;148660;148661;148662;148663;148664;148665;148666;148667;148668	148660			10	
GEGERPAQNEK	1	Unmodified	1213.5687	0.56872807	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.63	4.38	9	9	5				4			5	6	8	8	4.6907	3.0419	2;3	7.7075E-47	2280	160511_QHF_FH_JSI10i_1	215.06	186.89			0.94115	0.99294	7.9301	23	2	Median	1.2745	1.0531	6.8286	4	0	Median	0.83975	1.0104	1.7589	4	1	Median	0.93253	0.92779	4.9229	8	0	Median	0.97857	1.0343	7.8325	7	1	Median	22145000000	11319000000	10826000000	2217900000	968200000	1249700000	3386800000	1841700000	1545000000	9808800000	5198900000	4609900000	6731200000	3309900000	3421200000	18073	1765	17125	110207;110208;110209;110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220;110221;110222;110223;110224;110225;110226;110227;110228;110229;110230;110231;110232;110233	148669;148670;148671;148672;148673;148674;148675;148676;148677;148678;148679;148680;148681;148682;148683;148684;148685;148686;148687;148688;148689;148690;148691;148692;148693;148694;148695;148696;148697;148698;148699;148700;148701;148702;148703;148704;148705;148706;148707;148708;148709;148710;148711;148712;148713	148686			45	
GEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK	1	Unmodified	3176.4382	0.43817399	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	51.789	51.071	3;4	4.9304E-46	46045	160511_QHF_FH_JSI12i_1	143.77	141.52			1.0511	1.032	10.31	5	0	Median	1.407	1.1572	16.201	2	0	Median	0.87069	1.0088	NaN	1	0	Median	1.0511	1.031	NaN	1	0	Median	1.0359	1.0959	NaN	1	0	Median	922400000	460130000	462260000	253250000	107240000	146010000	199790000	110970000	88820000	263910000	137310000	126600000	205450000	104610000	100840000	18074	1639	17126	110234;110235;110236;110237;110238;110239	148714;148715;148716;148717;148718;148719;148720;148721;148722;148723;148724;148725;148726;148727	148719			14	
GEGESPQAR	0	Unmodified	929.42027	0.42027292	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				2	2	2	3	4.9653	-0.36728	2	3.1964E-05	2372	160511_QHF_FH_JSI12i_1	101.54	81.022			1.7705	1.721	30.948	9	2	Median	2.3049	1.8834	37.86	2	0	Median	1.9211	2.2533	38.115	2	1	Median	1.9714	1.932	36.759	2	0	Median	2.3033	2.4494	34.623	3	1	Plateau	4242400000	1270800000	2971600000	384910000	110380000	274530000	1416200000	409630000	1006600000	1221900000	368930000	852990000	1219400000	381870000	837520000	18075	1139	17127	110240;110241;110242;110243;110244;110245;110246;110247;110248	148728;148729;148730;148731;148732;148733;148734;148735;148736;148737	148729			10	
GEGFDVMK	1	Unmodified	881.3953	0.39530372	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.608	35.004	2	0.00051944	31371	160511_QHF_FH_JSI11i_1	105.57	38.886			0.84811	0.92029	12.723	4	0	Median	1.2098	1.0257	NaN	1	0	Median	0.77582	0.94095	NaN	1	0	Median	0.92714	0.90009	NaN	1	0	Median	0.73672	0.75796	NaN	1	0	Median	300560000	180010000	120540000	64923000	34539000	30383000	65470000	44102000	21369000	89484000	57342000	32142000	80683000	44032000	36650000	18076	1843	17128	110249;110250;110251;110252	148738;148739;148740;148741	148738			4	
GEGGILINSQGER	0	Unmodified	1328.6684	0.66844211	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.43	5	4	3				3	1		3	4	4	5	34.859	31.76	2	7.975E-117	26973	160511_QHF_FH_JSI11i_2	277.1	238.81			0.8586	0.92914	12.501	15	4	Median	1.1187	0.94004	20.924	3	1	Plateau	0.79009	0.94425	6.3611	4	2	Linear	0.98986	1.0042	1.3466	3	0	Plateau	0.83899	0.9263	14.678	5	1	Median	2747300000	1388500000	1358800000	410450000	179290000	231160000	963570000	506970000	456600000	739650000	371530000	368120000	633630000	330760000	302870000	18077	1367	17129	110253;110254;110255;110256;110257;110258;110259;110260;110261;110262;110263;110264;110265;110266;110267;110268	148742;148743;148744;148745;148746;148747;148748;148749;148750;148751;148752;148753;148754;148755;148756;148757;148758;148759;148760;148761;148762;148763;148764	148758			23	
GEGGTTNPHIFPEGSEPK	1	Unmodified	1852.8592	0.85915601	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		4								1	2	1		36.579	35.767	3	0.008267	31353	160511_QHF_FH_JSI10i_2	41.257	30.79			0.78969	0.81212	10.66	3	0	Median	0.87801	0.75648	NaN	1	0	Median	0.77749	0.93287	NaN	1	0	Median	0.78969	0.81212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	166760000	94188000	72576000	44907000	23891000	21016000	42771000	27038000	15733000	79085000	43259000	35826000	0	0	0	18078	4077	17130	110269;110270;110271;110272	148765;148766;148767	148767			3	
GEGLPNFDNNNIK	1	Unmodified	1430.679	0.6790068	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	51.452	50.519	2	0.00062233	45432	160511_QHF_FH_JSI10i_1	68.132	49.352			1.0263	0.95841	19.223	2	1	Median	1.3008	1.0979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80976	0.8366	NaN	1	1	Median	140330000	71883000	68446000	66205000	28189000	38016000	0	0	0	0	0	0	74123000	43694000	30429000	18079	5251	17131	110273;110274;110275;110276;110277;110278	148768;148769;148770;148771;148772;148773;148774	148772			7	
GEGLQLMNLMLR	0	Unmodified	1373.7159	0.71592635	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	2	3	2	96.879	96.601	2	1.395E-22	85767	160511_QHF_FH_JSI11i_3	170.72	123.52			0.92619	0.96914	8.9688	8	1	Median	1.2796	1.1103	2.0593	2	0	Median	0.84047	0.96914	0.38952	2	0	Median	0.98207	0.92832	10.026	2	1	Median	0.89575	0.92885	5.2771	2	0	Median	192540000	96812000	95728000	19509000	8846300	10663000	36788000	18041000	18747000	65559000	32564000	32995000	70684000	37361000	33323000	18080	3817	17132	110279;110280;110281;110282;110283;110284;110285;110286;110287;110288	148775;148776;148777;148778;148779;148780;148781;148782;148783;148784;148785;148786;148787;148788;148789;148790	148776			16	
GEGLVGDGPVDMR	0	Unmodified	1300.6082	0.60815004	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.635	46.811	2	1.9362E-08	42459	160511_QHF_FH_JSI12i_1	101.93	81.058			0.76193	0.75651	19.234	2	2	Median	1.0215	0.86672	NaN	1	1	Median	0.5683	0.66031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80312000	49097000	31216000	31217000	18796000	12421000	49095000	30300000	18795000	0	0	0	0	0	0	18081	3386	17133	110289;110290;110291;110292	148791;148792;148793;148794	148792			4	
GEGMPQYR	0	Unmodified	936.41235	0.41235077	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	2	2	1	17.597	17.064	2	0.0042817	14710	160511_QHF_FH_JSI12i_1	69.176	35.818			0.91067	0.99861	15.588	6	1	Median	1.4105	1.188	2.4346	2	0	Median	0.80432	0.94265	11.924	2	1	Median	0.83529	0.81965	NaN	1	0	Median	0.9602	0.97236	NaN	1	0	Median	414510000	216740000	197780000	115870000	52361000	63513000	141820000	80968000	60854000	41595000	25085000	16510000	115220000	58324000	56900000	18082	456	17134	110293;110294;110295;110296;110297;110298;110299	148795;148796;148797;148798	148796			4	
GEGMSQAATICK	1	Unmodified	1251.5588	0.55875701	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.883	22.745	2	9.2988E-10	19783	160511_QHF_FH_JSI11i_1	120.77	99.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18083	1104	17135	110300	148799	148799			1	
GEGPDGDVK	1	Unmodified	872.38758	0.3875758	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	1	3	2	7.4997	4.2067	2	5.5641E-05	4459	160511_QHF_FH_JSI9i_1	97.635	46.289			0.96048	1.0145	10.498	7	0	Median	1.2502	1.0145	NaN	1	0	Median	0.96048	1.1233	NaN	1	0	Median	1.0986	1.0531	11.853	3	0	Median	0.85904	0.91093	4.7327	2	0	Median	1394800000	730490000	664300000	393490000	185160000	208330000	348430000	193460000	154980000	341840000	177290000	164550000	311020000	174570000	136450000	18084	2286	17136	110301;110302;110303;110304;110305;110306;110307	148800;148801;148802;148803;148804	148803			5	
GEGPDVDVNLPK	1	Unmodified	1238.6143	0.61428128	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	12				3	3				2	3	5	8	52.489	48.951	2;3	3.0959E-53	43619	160511_QHF_FH_JSI10i_1	218.52	194.75			1.0363	1.0546	60.534	15	12	Median	3.6544	3.0474	NaN	1	1	Median	0.90182	1.068	84.03	3	2	Median	1.0759	1.0543	58.729	5	4	Median	0.96802	1.0355	55.071	6	5	Median	9703500000	4773100000	4930400000	148880000	46337000	102550000	1822400000	964800000	857590000	4189600000	2001900000	2187600000	3542700000	1760000000	1782700000	18085	2286	17137	110308;110309;110310;110311;110312;110313;110314;110315;110316;110317;110318;110319;110320;110321;110322;110323;110324;110325	148805;148806;148807;148808;148809;148810;148811;148812;148813;148814;148815;148816;148817;148818;148819;148820;148821;148822;148823	148816			19	
GEGPDVDVSLPK	1	Unmodified	1211.6034	0.60338224	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	1	4	2	54.455	50.87	2	1.0709E-09	45671	160511_QHF_FH_JSI11i_1	119.34	93.761			1.2741	1.171	17.792	6	5	Median	1.4997	1.2197	NaN	1	1	Median	0.87918	1.0338	NaN	1	0	Median	1.2741	1.2448	19.505	2	2	Median	1.2585	1.3568	26.581	2	2	Median	1197700000	539960000	657760000	298640000	120900000	177740000	254090000	162600000	91488000	356220000	135960000	220270000	288770000	120490000	168270000	18086	2286	17138	110326;110327;110328;110329;110330;110331;110332;110333;110334	148824;148825;148826;148827;148828;148829;148830;148831;148832;148833	148825			10	
GEGPDVDVTLPK	1	Unmodified	1225.619	0.6190323	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	1	3	53.977	51.597	2	6.4435E-23	46285	160511_QHF_FH_JSI10i_1	177.57	156.7			0.816	0.86267	30.243	5	1	Median	0.64918	0.52782	NaN	1	0	Median	0.75149	0.86267	NaN	1	0	Median	0.816	0.79282	NaN	1	0	Median	0.97479	1.0508	21.477	2	1	Median	1225700000	678770000	546980000	293650000	170740000	122900000	319900000	190610000	129290000	292770000	149700000	143070000	319430000	167720000	151710000	18087	2286	17139	110335;110336;110337;110338;110339;110340	148834;148835;148836;148837;148838;148839;148840;148841	148837			8	
GEGPDVHMTLPK	1	Unmodified	1279.6231	0.62307182	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	3	3	2	41.91	41.139	2;3	1.1261E-05	36143	160511_QHF_FH_JSI10i_2	96.067	85.457			0.97105	1.0324	32.493	10	2	Median	0.77528	0.66009	53.8	2	1	Median	0.83713	1.0257	40.633	3	1	Median	1.0188	1.0543	7.3056	3	0	Plateau	1.013	1.0991	2.8558	2	0	Median	1479300000	713460000	765840000	314420000	135480000	178940000	293610000	159380000	134230000	544310000	251210000	293100000	326950000	167390000	159560000	18088	2286	17140	110341;110342;110343;110344;110345;110346;110347;110348;110349;110350	148842;148843;148844;148845;148846;148847;148848;148849	148848			7	
GEGPEFDVNLSK	1	Unmodified	1290.6092	0.6091959	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	53.019	52.351	2	7.6998E-23	47659	160511_QHF_FH_JSI12i_1	176.42	154.96			0.75936	0.75961	26.416	4	3	Median	1.1804	0.97053	NaN	1	1	Median	0.47509	0.55006	NaN	1	1	Median	0.68259	0.65206	NaN	1	1	Median	0.84476	0.88491	NaN	1	0	Median	1024200000	644850000	379330000	219590000	109410000	110180000	330590000	221510000	109080000	312060000	228290000	83771000	161960000	85651000	76304000	18089	2286	17141	110351;110352;110353;110354;110355;110356	148850;148851;148852;148853;148854;148855;148856;148857;148858	148853			9	
GEGPEVDMNLPK	1	Unmodified	1284.602	0.60200203	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.008	49.33	2	7.4835E-11	44527	160511_QHF_FH_JSI11i_1	147.74	136.59			1.0588	0.9674	10.802	4	2	Median	1.1157	0.90848	NaN	1	0	Median	0.79369	0.92572	NaN	1	1	Median	1.0363	1.011	NaN	1	0	Median	1.0817	1.1512	NaN	1	1	Median	1620400000	856410000	763960000	385600000	198410000	187200000	342890000	183460000	159440000	468920000	245870000	223050000	422950000	228680000	194270000	18090	2286	17142	110357;110358;110359;110360	148859;148860;148861;148862;148863;148864	148859			6	
GEGPEVDVK	1	Unmodified	928.45018	0.45017606	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.39	17.897	2	3.9057E-08	15434	160511_QHF_FH_JSI12i_1	154.49	93.579			1.4327	1.4683	17.316	4	2	Median	1.9181	1.5411	NaN	1	0	Median	0.92369	1.0685	NaN	1	1	Median	1.4131	1.3989	NaN	1	0	Median	1.4526	1.5415	NaN	1	1	Median	935350000	453500000	481840000	241410000	92021000	149390000	204390000	124220000	80169000	199120000	96891000	102230000	290420000	140370000	150050000	18091	2286	17143	110361;110362;110363;110364	148865;148866;148867;148868;148869	148867			5	
GEGPEVDVNLPK	1	Unmodified	1252.6299	0.62993134	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.66	8		1		3	4				3	4	4	5	54.428	49.887	2;3	5.8129E-42	44510	160511_QHF_FH_JSI10i_1	207.34	187.01			1.056	1.1093	16.466	16	3	Median	1.1491	0.95074	25.109	3	1	Plateau	0.84291	1.0005	10.463	4	0	Median	1.1831	1.1383	5.943	4	0	Median	1.0559	1.1332	1.4043	5	2	Median	7397000000	3857700000	3539300000	1657900000	823400000	834500000	1929700000	1073600000	856120000	1957500000	997090000	960400000	1851900000	963630000	888270000	18092	2286	17144	110365;110366;110367;110368;110369;110370;110371;110372;110373;110374;110375;110376;110377;110378;110379;110380	148870;148871;148872;148873;148874;148875;148876;148877;148878;148879;148880;148881;148882;148883;148884;148885;148886;148887;148888;148889;148890;148891;148892;148893;148894;148895	148881			26	
GEGPEVDVTLPK	1	Unmodified	1239.6347	0.63468237	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	56.584	53.001	2	3.255E-11	47477	160511_QHF_FH_JSI10i_1	152.07	133.76			1.0502	1.0599	9.652	6	0	Median	1.0946	0.89114	NaN	1	0	Median	0.91373	1.1024	NaN	1	0	Median	1.1497	1.1086	9.1119	2	0	Median	0.96523	1.0396	5.4931	2	0	Median	1209900000	618160000	591720000	283530000	142350000	141180000	290100000	162580000	127520000	336860000	170060000	166800000	299390000	143180000	156220000	18093	2286	17145	110381;110382;110383;110384;110385;110386	148896;148897;148898;148899;148900;148901;148902;148903;148904;148905;148906;148907	148902			12	
GEGQLGPAER	0	Unmodified	1012.4938	0.49377221	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.56	4	4	4			4	3			4	5	5	5	14.416	10.724	2	7.0307E-34	9937	160511_QHF_FH_JSI12i_1	204.07	145.15			0.96474	0.98082	16.116	19	0	Median	1.2841	1.0998	6.2073	4	0	Median	0.83625	0.98005	5.3639	5	0	Median	0.98131	0.96807	14.638	5	0	Median	0.85176	0.93071	29.426	5	0	Median	20402000000	10323000000	10079000000	4694600000	2142900000	2551700000	5302400000	2855800000	2446500000	5021800000	2501200000	2520700000	5383300000	2823000000	2560300000	18094	1033	17146	110387;110388;110389;110390;110391;110392;110393;110394;110395;110396;110397;110398;110399;110400;110401;110402;110403;110404;110405	148908;148909;148910;148911;148912;148913;148914;148915;148916;148917;148918;148919;148920;148921;148922;148923;148924;148925;148926;148927;148928;148929;148930;148931;148932;148933;148934;148935;148936;148937	148916			30	
GEGQLGPAERAK	1	Unmodified	1211.6258	0.62584901	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		10.501	10.238	3	0.0187	8057	160511_QHF_FH_JSI10i_2	42.789	31.097			0.16997	0.18188	12.988	2	2	Median	NaN	NaN	NaN	0	0	Median	0.16103	0.19938	NaN	1	1	Median	0.1794	0.16592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147960000	126240000	21721000	0	0	0	79103000	66211000	12892000	68856000	60027000	8829000	0	0	0	18095	1033	17147	110406;110407	148938;148939	148939			2	
GEGTEQEPSTTPEADDDGRR	0	Unmodified	2145.9047	0.90466223	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	13.891	13.556	3	1.115E-09	11181	160511_QHF_FH_JSI10i_1	114.52	104.94			1.0704	1.1542	17.731	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1528	1.3083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99384	1.0182	NaN	1	0	Median	64855000	31638000	33216000	0	0	0	31176000	13162000	18013000	0	0	0	33679000	18476000	15203000	18096	2297	17148	110408;110409	148940;148941;148942	148942			3	
GEGTPREEGK	1	Unmodified	1058.4993	0.49925152	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	4.7217	4.1505	3	0.025095	2148	160511_QHF_FH_JSI12i_2	37.696	8.9696			0.95954	1.0657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95954	1.0657	NaN	1	1	Median	78406000	40546000	37860000	0	0	0	0	0	0	0	0	0	78406000	40546000	37860000	18097	3341	17149	110410	148943	148943			1	
GEGYAKPNEGAIVEVALEGYYK	2	Unmodified	2356.1587	0.15869207	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	83.666	82.572	3	1.8887E-05	71312	160511_QHF_FH_JSI12i_2	57.826	54.428			0.86482	0.90169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86482	0.90169	NaN	1	0	Median	16661000	10022000	6638700	0	0	0	0	0	0	0	0	0	16661000	10022000	6638700	18098	2193	17150	110411	148944	148944			1	
GEHGFIGCR	0	Unmodified	1031.4607	0.46069794	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	13.437	13.001	2;3	4.1189E-06	10346	160511_QHF_FH_JSI11i_3	120.46	108.31			0.9127	0.99004	19.913	8	1	Median	1.3255	1.074	0.77595	2	0	Median	0.78393	0.92486	2.164	2	0	Median	0.72642	0.68249	4.1554	2	0	Median	1.0612	1.0734	3.9658	2	1	Median	901400000	458850000	442550000	184280000	89705000	94577000	278670000	146560000	132120000	321010000	171370000	149640000	117440000	51224000	66217000	18099	2751	17151	110412;110413;110414;110415;110416;110417;110418;110419	148945;148946;148947;148948;148949;148950;148951;148952;148953;148954;148955;148956;148957;148958	148947			14	
GEHLLLFLVQTVAR	0	Unmodified	1594.9195	0.91951184	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									7	2	2	2	1	91.709	83.54	2;3	4.8091E-17	46735	160513_QHF_FH_JSI11Kac_6	133.98	118.03			1.1614	1.1059	27.493	7	1	Median	1.5151	1.2824	9.997	2	0	Median	0.63645	0.73556	11.483	2	0	Median	1.2891	1.2371	15.86	2	1	Median	0.87371	0.91028	NaN	1	0	Median	723480000	374580000	348910000	202740000	73912000	128830000	288120000	200140000	87977000	196920000	78991000	117930000	35701000	21534000	14167000	18100	641	17152	110420;110421;110422;110423;110424;110425;110426	148959;148960;148961;148962;148963;148964;148965	148959			6	
GEHLNTEQSHEVQPGVPPPPLPK	1	Unmodified	2486.2554	0.25538642	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	46.714	46.594	4	3.6084E-08	39747	160511_QHF_FH_JSI12i_3	76.186	72.235			0.94007	0.8995	0.56992	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98628	0.90314	NaN	1	1	Median	0.89604	0.89589	NaN	1	0	Median	159380000	101410000	57972000	0	0	0	0	0	0	69940000	47129000	22811000	89442000	54281000	35161000	18101	681	17153	110427;110428	148966;148967;148968;148969	148969			4	
GEHPGLSIGDVAK	1	Unmodified	1278.6568	0.65681479	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	4.84	2	9	8					4		4	6	8	5	39.518	37.053	2;3	5.3854E-22	32228	160511_QHF_FH_JSI9i_2	172.17	127.82			0.95363	0.96808	24.682	22	2	Median	1.0715	0.92207	9.6085	4	0	Median	0.77081	0.93812	32.452	6	1	Median	1.0544	1.0703	24.813	7	1	Median	0.96482	1.0504	19.904	5	0	Median	9591500000	5025800000	4565700000	1273400000	570930000	702430000	2226300000	1328800000	897480000	3826500000	2000900000	1825600000	2265400000	1125200000	1140200000	18102	928	17154	110429;110430;110431;110432;110433;110434;110435;110436;110437;110438;110439;110440;110441;110442;110443;110444;110445;110446;110447;110448;110449;110450;110451	148970;148971;148972;148973;148974;148975;148976;148977;148978;148979;148980;148981;148982;148983;148984;148985;148986;148987;148988;148989;148990;148991;148992;148993;148994;148995;148996;148997;148998;148999;149000;149001;149002;149003;149004;149005;149006;149007	148983			38	
GEHPGLSIGDVAKK	2	Unmodified	1406.7518	0.75177781	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	1			By MS/MS		3	0			1									1		30.304	30.304	3	0.05313	26231	160511_QHF_FH_JSI11i_3	25.511	16.69			0.8434	0.7844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8434	0.7844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20018000	10651000	9367400	0	0	0	0	0	0	20018000	10651000	9367400	0	0	0	18103	928	17155	110452	149008	149008			1	
GEHSIVYLK	1	Unmodified	1044.5604	0.56039521	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.52		9	7					2	8	6	7	6	7	30.645	26.644	2;3	2.2159E-31	23186	160511_QHF_FH_JSI10i_2	201.97	183.2			1.0956	1.0157	21.257	26	1	Median	1.1491	0.98622	19.548	6	0	Median	0.76007	0.9154	12.87	7	0	Median	1.1261	1.1554	13.047	6	0	Median	1.1239	1.1928	24.805	7	1	Median	6729200000	3118200000	3611000000	1027300000	496830000	530480000	1299600000	695750000	603850000	2355800000	1062900000	1292900000	2046600000	862780000	1183800000	18104	2193	17156	110453;110454;110455;110456;110457;110458;110459;110460;110461;110462;110463;110464;110465;110466;110467;110468;110469;110470;110471;110472;110473;110474;110475;110476;110477;110478	149009;149010;149011;149012;149013;149014;149015;149016;149017;149018;149019;149020;149021;149022;149023;149024;149025;149026;149027;149028;149029;149030;149031;149032;149033;149034;149035;149036;149037;149038;149039;149040;149041;149042;149043;149044;149045;149046;149047;149048;149049;149050;149051;149052	149037			41	
GEHSIVYLKPSYAFGSVGK	2	Unmodified	2038.0524	0.052376507	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	62.965	61.765	3;4	4.4601E-06	51825	160511_QHF_FH_JSI10i_3	85.636	75.64			0.84877	0.77477	57.624	4	0	Median	0.5976	0.4884	8.7149	2	0	Median	1.265	1.4653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1447	1.1556	NaN	1	0	Median	246860000	115750000	131110000	105420000	58440000	46979000	61632000	26553000	35079000	0	0	0	79812000	30755000	49057000	18105	2193	17157	110479;110480;110481;110482;110483	149053;149054;149055;149056;149057	149053			4	
GEHSIVYLKPSYAFGSVGK	2	Acetyl (K)	2080.0629	0.062941193	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	79.365	69.987	3	2.0174E-06	38406	160513_QHF_FH_JSI11Kac_6	87.49	73.863			0.27509	0.26881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27509	0.26881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105480000	87015000	18468000	0	0	0	0	0	0	90853000	72385000	18468000	14630000	14630000	0	18106	2193	17157	110484;110485	149058;149059;149060	149059	2306		3	
GEHVPGFCLPK	1	Unmodified	1239.607	0.60702783	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		47.565	47.305	3	0.002014	41707	160511_QHF_FH_JSI11i_3	58.676	49.244			1.7746	1.7108	1.4934	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7746	1.7108	1.4934	2	2	Median	NaN	NaN	NaN	0	0	Median	156390000	59914000	96474000	0	0	0	0	0	0	156390000	59914000	96474000	0	0	0	18107	3860	17158	110486;110487	149061;149062	149061			2	
GEIAGPPDTPYEGGR	0	Unmodified	1514.7001	0.70013617	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.257	38.632	2	9.9147E-05	34794	160511_QHF_FH_JSI11i_1	105.17	92.594			0.90263	1.6371	50.801	4	2	Linear	0.87431	0.70127	NaN	1	1	Median	0.71824	0.85715	NaN	1	1	Median	0.93186	0.9032	NaN	1	0	Median	2.143	2.2006	NaN	1	0	Median	219480000	101670000	117810000	40409000	15283000	25126000	53905000	31539000	22366000	60133000	31750000	28383000	65029000	23100000	41930000	18108	1936	17159	110488;110489;110490;110491	149063;149064;149065;149066	149063			4	
GEIAQNLLSLVK	1	Unmodified	1283.7449	0.74490152	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	89.943	89.779	2	6.91E-05	79948	160511_QHF_FH_JSI11i_3	95.477	62.248			1.2343	1.2804	17.971	3	1	Median	1.7301	1.5062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1149	1.052	NaN	1	0	Median	1.2343	1.2804	NaN	1	0	Median	68239000	28110000	40129000	6047800	1943200	4104700	0	0	0	22329000	11595000	10735000	39862000	14572000	25290000	18109	2499	17160	110492;110493;110494	149067;149068;149069	149067			2	
GEIAVNALWPK	1	Unmodified	1196.6554	0.65535823	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	72.979	72.018	2	4.6133E-07	62063	160511_QHF_FH_JSI12i_2	116.3	100.64			0.85937	0.91039	16.397	3	1	Median	1.1799	1.0373	NaN	1	0	Median	0.61692	0.7489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85937	0.91039	NaN	1	0	Median	56762000	30673000	26089000	12929000	5507200	7421500	20416000	11962000	8453400	0	0	0	23418000	13204000	10214000	18110	3175	17161	110495;110496;110497	149070;149071;149072;149073	149070			3	
GEIDAHEDSFK	1	Unmodified	1246.5466	0.54659564	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	2	4								2		1	3	22.813	22.041	2;3	0.00047003	19519	160511_QHF_FH_JSI12i_1	79.201	69.987			0.33353	0.34737	28.236	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28518	0.2845	NaN	1	1	Median	0.39008	0.42414	NaN	1	1	Median	108660000	87616000	21039000	0	0	0	0	0	0	51055000	36218000	14837000	57600000	51399000	6201400	18111	2470	17162	110498;110499;110500;110501;110502;110503	149074;149075;149076;149077;149078;149079	149076			6	
GEIDASVPELEGDLRGPQVDVK	1	Unmodified	2322.1703	0.17031939	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	77.065	76.575	3	3.9305E-10	69582	160511_QHF_FH_JSI11i_1	109.66	100.33			0.56672	0.59452	63.542	5	1	Median	0.78593	0.64081	NaN	1	0	Median	0.49199	0.59452	NaN	1	0	Median	0.53895	0.50659	NaN	1	0	Median	1.1165	1.1697	99.479	2	1	Median	274880000	165710000	109170000	18306000	11988000	6317700	79855000	53842000	26013000	63517000	40913000	22603000	113200000	58966000	54238000	18112	2286	17163	110504;110505;110506;110507;110508;110509	149080;149081;149082;149083;149084;149085;149086;149087;149088	149081			9	
GEIEDYR	0	Unmodified	880.39266	0.39266118	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	15.936	15.467	2	0.019071	13059	160511_QHF_FH_JSI10i_1	58.917	31.955			0.9482	0.96769	5.5324	4	0	Median	1.2299	1.0063	NaN	1	0	Median	0.88934	1.0358	NaN	1	0	Median	0.99198	0.93054	NaN	1	0	Median	0.90635	0.92892	NaN	1	0	Median	304760000	161540000	143220000	72795000	31614000	41181000	72071000	42285000	29786000	71413000	36015000	35398000	88481000	51624000	36858000	18113	3709	17164	110510;110511;110512;110513	149089;149090	149090			2	
GEIEQERLDK	1	Unmodified	1215.6095	0.60953025	2758	Q16720	ATP2B3	Plasma membrane calcium-transporting ATPase 3	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	15.56	14.646	2	0.013313	11751	160511_QHF_FH_JSI12i_2	62.823	0			0.99631	1.0908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99631	1.0908	NaN	1	0	Median	22138000	11756000	10382000	0	0	0	0	0	0	0	0	0	22138000	11756000	10382000	18114	2758	17165	110514	149091	149091			1	
GEIEQRPTPGSR	0	Acetyl (Protein N-term)	1367.6793	0.67934115	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	2										1	1		20.463	20.27	2	0.017463	17342	160511_QHF_FH_JSI11i_1	41.689	25.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18115	5627	17166	110515;110516	149092;149093	149092			2	
GEIETVK	1	Unmodified	774.41233	0.41233399	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0						4				1	1	1	1	16.848	6.9384	2	3.8212E-05	7178	160513_QHF_FH_JSI11Kac_3	127.84	56.931			0.97213	1.0552	14.963	4	1	Median	1.7283	1.3437	NaN	1	1	Median	0.90353	1.0763	NaN	1	0	Median	1.0459	1.0345	NaN	1	0	Median	0.88368	0.94462	NaN	1	0	Median	68303000	33648000	34655000	25169000	9127200	16042000	8132400	4553200	3579200	23004000	13639000	9365300	11998000	6329100	5668600	18116	1544	17167	110517;110518;110519;110520	149094;149095;149096;149097;149098;149099;149100	149095			7	
GEIGDATPFNDAVNVQK	1	Unmodified	1773.8533	0.85334235	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.355	59.476	2	2.364E-10	52787	160511_QHF_FH_JSI9i_1	143.55	127.22			1.3273	1.2125	9.765	2	2	Median	1.5875	1.2992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1098	1.1316	NaN	1	1	Median	151760000	68370000	83391000	69946000	28622000	41324000	0	0	0	0	0	0	81816000	39748000	42068000	18117	1366	17168	110521;110522	149101;149102	149102			2	
GEIGDPQTENPSTR	0	Unmodified	1499.6852	0.68521439	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	20.6	20.293	2	1.3689E-07	17712	160511_QHF_FH_JSI12i_1	97.214	78.469			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18118	2948	17169	110523;110524	149103;149104	149104			2	
GEIIGVK	1	Unmodified	714.42759	0.42759012	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			2	2	3	3	25.696	24.193	2	0.0026708	15054	160513_QHF_FH_JSI11Kac_4	94.407	21.368			0.85157	0.78582	20.936	10	1	Median	0.93614	0.76726	3.9549	2	0	Median	0.64339	0.77779	0.87833	2	0	Median	0.846	0.86423	24.412	3	1	Plateau	0.73573	0.80334	25.274	3	0	Plateau	4391100000	2300700000	2090400000	863330000	412440000	450890000	910790000	533280000	377510000	1482100000	725670000	756430000	1134900000	629350000	505540000	18119	2641	17170	110525;110526;110527;110528;110529;110530;110531;110532;110533;110534	149105;149106;149107;149108;149109;149110;149111;149112;149113;149114;149115;149116;149117;149118;149119;149120;149121;149122	149114			18	
GEILIGGQSVTMGYYK	1	Unmodified	1714.86	0.86000763	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	2	1	1	73.618	73.037	2	9.0707E-08	66606	160511_QHF_FH_JSI12i_1	137.59	113.74			0.8066	0.80679	10.762	6	3	Median	0.89192	0.75368	13.878	2	2	Median	0.67718	0.81593	17.526	2	0	Median	0.82326	0.79333	NaN	1	0	Median	0.76266	0.82048	NaN	1	1	Median	226740000	122960000	103780000	53316000	28574000	24741000	81893000	47007000	34886000	48093000	22031000	26062000	43434000	25347000	18087000	18120	707	17171	110535;110536;110537;110538;110539;110540	149123;149124;149125;149126;149127;149128	149123			6	
GEILLEEEK	1	Unmodified	1058.5496	0.54955575	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		1	0	3									1	1	1		39.382	38.75	2	0.00061465	34861	160511_QHF_FH_JSI11i_1	85.731	49.174			0.8902	0.87928	12.001	3	0	Median	1.2683	1.0553	NaN	1	0	Median	0.73833	0.84164	NaN	1	0	Median	0.8902	0.87928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76386000	36077000	40308000	22664000	10532000	12132000	25713000	15000000	10713000	28009000	10545000	17464000	0	0	0	18121	2977	17172	110541;110542;110543	149129	149129			1	
GEIPEVAFMK	1	Unmodified	1119.5634	0.56343168	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	67.903	67.099	2	0.043607	61184	160511_QHF_FH_JSI12i_1	51.949	28.181			0.87771	0.82776	13.528	2	0	Median	1.0702	0.91086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71983	0.75225	NaN	1	0	Median	67990000	35663000	32327000	32452000	15978000	16474000	0	0	0	0	0	0	35538000	19685000	15853000	18122	5257	17173	110544;110545	149130	149130			0	
GEIQEYGAPSDLLQQR	0	Unmodified	1802.8799	0.87989145	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	63.073	62.545	2	2.6337E-07	56896	160511_QHF_FH_JSI12i_1	144.57	100.94			0.68522	0.68193	21.887	4	3	Median	NaN	NaN	NaN	0	0	Median	0.48903	0.56901	NaN	1	0	Median	0.6163	0.59843	NaN	1	1	Median	0.81327	0.83805	10.682	2	2	Median	101830000	62811000	39019000	0	0	0	39517000	26666000	12851000	18008000	12033000	5975400	44305000	24112000	20193000	18123	1403	17174	110546;110547;110548;110549;110550	149131;149132;149133;149134;149135	149133			5	
GEISATQDVMMEEIFR	0	Unmodified	1854.8492	0.84918495	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.67	0.471	1	2								1		2		92.197	91.798	2	1.2857E-05	83545	160511_QHF_FH_JSI11i_1	106.17	92.747			0.59443	0.54539	45.827	2	2	Median	0.45795	0.39443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7716	0.75411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29351000	17854000	11497000	11516000	9195800	2320200	0	0	0	17834000	8657900	9176500	0	0	0	18124	2475	17175	110551;110552;110553	149136;149137;149138	149136			3	
GEITGEVHMPSGK	1	Unmodified	1340.6395	0.63945017	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	33.937	33.073	3	0.059605	28186	160511_QHF_FH_JSI11i_2	26.711	18.198			0.9475	0.9931	19.124	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87589	0.86749	NaN	1	0	Median	1.025	1.1369	NaN	1	0	Median	84388000	48016000	36372000	0	0	0	0	0	0	50408000	27140000	23268000	33980000	20876000	13104000	18125	512	17176	110554;110555	149139	149139			0	
GEITPAAIQK	1	Unmodified	1026.571	0.5709599	2680	Q15532	SS18	Protein SSXT	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.25	30.65	2	0.00041204	27479	160511_QHF_FH_JSI12i_1	75.378	62.851			0.91393	1.0225	47.497	4	0	Median	0.59103	0.48334	NaN	1	0	Median	1.0932	1.2884	NaN	1	0	Median	1.3504	1.3274	NaN	1	0	Median	0.76407	0.8115	NaN	1	0	Median	189070000	106460000	82610000	47751000	28986000	18765000	46381000	26027000	20354000	44989000	21690000	23300000	49944000	29752000	20192000	18126	2680	17177	110556;110557;110558;110559	149140;149141;149142;149143	149141			4	
GEIVIGGQNISMGYFK	1	Unmodified	1711.8603	0.86034198	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.281	83.553	2	4.1621E-07	74249	160511_QHF_FH_JSI10i_2	133.32	119.42			0.77299	0.74098	25.367	4	1	Median	0.71457	0.62657	NaN	1	1	Median	0.43855	0.53755	NaN	1	0	Median	0.88407	0.87627	NaN	1	0	Median	0.8362	0.89997	NaN	1	0	Median	116880000	55952000	60925000	17393000	8829200	8563600	23544000	13899000	9644700	43791000	20924000	22867000	32150000	12300000	19850000	18127	418	17178	110560;110561;110562;110563	149144;149145;149146;149147;149148;149149;149150	149149			7	
GEIVVIGATNR	0	Unmodified	1127.6299	0.62987176	3133	Q6PL18;Q9ULI0	ATAD2;ATAD2B	ATPase family AAA domain-containing protein 2;ATPase family AAA domain-containing protein 2B	yes	no	0	0	0	0		By MS/MS	By MS/MS		14	0							3				2	1		51.789	41.211	2	0.0014296	24138	160513_QHF_FH_JSI11Kac_4	77.662	52.887			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18128	3133	17179	110564;110565;110566	149151;149152;149153	149153			3	
GEKAGSDQK	2	Acetyl (K)	960.45124	0.45123869	5823				yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.9	0.639				2	4	1					3	3	1	32.625	24.126	2	0.0072058	11072	160513_QHF_FH_JSI11Kac_2	67.981	14.427	+		0.88897	0.90031	7.1822	7	0	Median	NaN	NaN	NaN	0	0	Median	0.84619	0.98794	3.8732	3	0	Plateau	0.88897	0.89041	0.63798	3	0	Plateau	0.86955	0.87169	NaN	1	0	Median	588800000	306190000	282610000	0	0	0	123370000	65538000	57834000	234650000	111200000	123450000	230790000	129450000	101330000	18129	5823	17180	110567;110568;110569;110570;110571;110572;110573	149154;149155;149156;149157	149154	3571		4	
GEKGVSSQSK	2	Acetyl (K)	1047.5197	0.51965261	5514	Q9Y2D9	ZNF652	Zinc finger protein 652	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.7				1	3	3					2	3	2	7.9827	0.69857	2	1.2353E-08	2996	160513_QHF_FH_JSI10Kac_3	143.96	106.4			1.05	1.0408	34.549	7	0	Median	NaN	NaN	NaN	0	0	Median	0.74242	0.8889	5.1886	2	0	Median	1.05	1.0408	46.2	3	0	Plateau	1.0205	1.1184	10.961	2	0	Median	187260000	95319000	91940000	0	0	0	56837000	30563000	26275000	52576000	24280000	28296000	77846000	40476000	37369000	18130	5514	17181	110574;110575;110576;110577;110578;110579;110580	149158;149159;149160;149161;149162;149163;149164;149165;149166;149167;149168;149169	149167	3466		12	
GEKPNPLR	1	Unmodified	909.50321	0.50321468	2077	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		8.6869	8.3482	2;3	0.0023828	6150	160511_QHF_FH_JSI10i_3	59.245	38.941			0.8951	0.92465	6.1796	5	0	Median	1.1241	0.90747	NaN	1	0	Median	0.87634	0.99991	1.7778	2	0	Median	0.92916	0.89742	4.2281	2	0	Median	NaN	NaN	NaN	0	0	Median	1489400000	759560000	729880000	83915000	31645000	52270000	587740000	282010000	305730000	817790000	445910000	371880000	0	0	0	18131	2077	17182	110581;110582;110583;110584;110585	149170;149171;149172;149173;149174;149175	149174			6	
GELANEVK	1	Unmodified	858.4447	0.44469675	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		16.988	13.191	2	0.041019	8726	160513_QHF_FH_JSI11Kac_3	55.676	16.884			0.64514	0.62269	44.827	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64514	0.62269	44.827	2	2	Median	NaN	NaN	NaN	0	0	Median	31496000	20512000	10983000	0	0	0	0	0	0	31496000	20512000	10983000	0	0	0	18132	1436	17183	110586;110587	149176;149177	149177			2	
GELANFR	0	Unmodified	805.40825	0.40825167	5718;5719	Q9Y6D5;Q9Y6D6	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	no	no	0	0	0	0			By MS/MS		3	0			1									1		27.457	27.457	2	0.053947	23840	160511_QHF_FH_JSI11i_3	42.124	14.956			1.4304	1.3671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4304	1.3671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4677400000	2009000000	2668400000	0	0	0	0	0	0	4677400000	2009000000	2668400000	0	0	0	18133	5718;5719	17184	110588	149178	149178			1	
GELDLTGAK	1	Unmodified	902.47091	0.4709115	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.507	30.235	2	0.0014744	26457	160511_QHF_FH_JSI9i_1	76.827	24.972			1.0053	0.81775	NaN	1	0	Median	1.0053	0.81775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21125000	10052000	11073000	21125000	10052000	11073000	0	0	0	0	0	0	0	0	0	18134	1045	17185	110589	149179;149180	149179			2	
GELEASQQQVEVYK	1	Unmodified	1606.7839	0.7838658	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.384	39.882	2	3.1861E-17	35906	160511_QHF_FH_JSI11i_1	135.6	110.76			0.65309	0.71152	4.1186	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64799	0.73254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65824	0.69109	NaN	1	1	Median	39282000	24685000	14597000	0	0	0	17888000	10391000	7497200	0	0	0	21394000	14295000	7099600	18135	3423	17186	110590;110591;110592	149181;149182;149183	149181			3	
GELESSDQVR	0	Unmodified	1118.5204	0.52038089	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	14.653	12.194	2	0.00031588	10355	160511_QHF_FH_JSI11i_1	78.334	49.233			0.74327	0.80391	6.0853	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64061	0.75232	NaN	1	0	Median	0.87531	0.84955	NaN	1	0	Median	0.74327	0.80391	NaN	1	1	Median	156330000	94038000	62294000	0	0	0	72945000	40560000	32385000	81609000	52330000	29279000	1778600	1147700	630940	18136	5213	17187	110593;110594;110595	149184;149185;149186	149184			3	
GELFLFWNLYK	1	Unmodified	1428.7442	0.74417324	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.969	87.562	2	1.3012E-38	51743	160513_QHF_FH_JSI10Kac_6	203.29	141.02			0.88481	0.90765	23.872	4	0	Median	0.95433	0.80202	NaN	1	0	Median	0.82035	0.95725	NaN	1	0	Median	1.427	1.3725	NaN	1	0	Median	0.80213	0.86062	NaN	1	0	Median	560270000	290970000	269300000	169440000	91096000	78347000	195130000	94259000	100880000	106330000	50980000	55349000	89364000	54633000	34731000	18137	412	17188	110596;110597;110598;110599	149187;149188;149189;149190;149191	149191			5	
GELFQAFIDTAQHMLK	1	Unmodified	1847.924	0.92400487	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.03	102.03	3	0.0091585	91174	160511_QHF_FH_JSI11i_3	45.384	27.896			1.1806	1.1067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1806	1.1067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85258000	32094000	53163000	0	0	0	0	0	0	85258000	32094000	53163000	0	0	0	18138	5281	17189	110600	149192	149192			1	
GELGCFLSHYNIWK	1	Unmodified	1722.8188	0.81881152	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	87.195	87.129	2;3	1.7256E-15	75634	160511_QHF_FH_JSI12i_3	163.27	145.41			1.3146	1.263	12.06	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2552	1.1598	NaN	1	0	Median	1.3769	1.3755	NaN	1	0	Median	136280000	61542000	74734000	0	0	0	0	0	0	44055000	20395000	23660000	92221000	41147000	51074000	18139	3593	17190	110601;110602;110603	149193;149194	149193			2	
GELGMMLSLQNVIQK	1	Unmodified	1659.8688	0.86879818	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	99.022	98.976	2;3	9.1197E-15	85625	160511_QHF_FH_JSI12i_3	161.99	144.62			1.2372	1.2535	22.178	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9017	1.7955	NaN	1	0	Median	1.211	1.2253	3.2234	2	0	Median	79305000	32531000	46774000	0	0	0	0	0	0	16060000	5502700	10558000	63245000	27028000	36216000	18140	5049	17191	110604;110605;110606;110607	149195;149196;149197;149198	149196			4	
GELIHVFNK	1	Unmodified	1055.5764	0.57637963	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	44.577	43.741	2;3	7.3345E-07	37050	160511_QHF_FH_JSI12i_3	110.87	99.707			1.0493	1.0386	15.332	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90507	1.0382	23.341	2	1	Median	1.0233	0.94963	NaN	1	0	Median	1.1223	1.1359	NaN	1	0	Median	319790000	165990000	153800000	0	0	0	64603000	35141000	29462000	89620000	39904000	49716000	165560000	90941000	74624000	18141	4637	17192	110608;110609;110610;110611	149199;149200;149201;149202	149202			4	
GELLEAIK	1	Unmodified	871.50148	0.50148335	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	48.909	46.898	2	0.0017787	40048	160511_QHF_FH_JSI12i_2	85.064	0			1.0268	1.0498	28.87	8	1	Median	1.0868	0.92563	NaN	1	0	Median	0.97006	1.2069	38.705	3	1	Median	1.1062	1.0599	1.1209	2	0	Median	0.8646	0.91853	11.112	2	0	Median	516740000	263810000	252930000	76509000	35441000	41068000	118110000	63949000	54159000	197070000	97614000	99459000	125050000	66810000	58243000	18142	807	17193	110612;110613;110614;110615;110616;110617;110618;110619;110620;110621	149203;149204;149205;149206;149207;149208;149209;149210;149211;149212;149213	149204			8	
GELLEAIKR	1	Unmodified	1027.6026	0.60259438	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							2	3	3	2	38.274	37.584	2;3	1.1958E-07	32757	160511_QHF_FH_JSI11i_3	123.86	67.602			0.89589	0.82133	19.318	9	2	Median	1.1301	0.91663	4.2838	2	0	Median	0.65239	0.766	7.7855	2	1	Median	0.89589	0.82133	17.561	3	1	Plateau	1.013	1.0548	14.8	2	0	Median	531720000	274430000	257290000	102260000	44594000	57668000	135870000	83120000	52750000	236590000	112300000	124280000	57002000	34409000	22593000	18143	807	17194	110622;110623;110624;110625;110626;110627;110628;110629;110630;110631	149214;149215;149216;149217;149218;149219;149220;149221;149222	149216			8	
GELLGTEK	1	Unmodified	845.44945	0.44944778	5848				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.718	21.215	2	0.024604	18465	160511_QHF_FH_JSI12i_1	42.869	4.7359	+		0.53098	0.55078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53098	0.55078	NaN	1	0	Median	531950000	303330000	228610000	0	0	0	0	0	0	0	0	0	531950000	303330000	228610000	18144	5848	17195	110632	149223	149223			1	
GELPDFQDGTK	1	Unmodified	1205.5564	0.55643205	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	43.176	42.677	2	0.011318	38694	160511_QHF_FH_JSI12i_1	56.043	42.665			5.7926	5.9174	36.842	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.8713	7.6784	NaN	1	1	Median	4.2628	4.5603	NaN	1	1	Median	614710000	67243000	547460000	0	0	0	0	0	0	351960000	37282000	314680000	262740000	29961000	232780000	18145	102	17196	110633;110634	149224;149225	149225			2	
GELQNWPDLLPK	1	Unmodified	1408.7351	0.73506511	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	84.728	84.143	2	1.1284E-10	76728	160511_QHF_FH_JSI11i_1	161.62	148.03			0.84873	0.87592	17.668	8	2	Median	0.9423	0.79239	26.107	2	1	Median	0.79922	0.94463	23.394	2	0	Median	0.8357	0.83442	22.902	2	0	Median	0.82246	0.87592	9.8271	2	1	Median	636470000	346710000	289750000	94608000	43856000	50752000	156750000	81216000	75530000	211000000	111020000	99976000	174110000	110620000	63494000	18146	3914	17197	110635;110636;110637;110638;110639;110640;110641;110642	149226;149227;149228;149229;149230;149231;149232;149233;149234;149235	149227			9	
GELQSSDLFHHSK	1	Unmodified	1483.7056	0.7055559	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.186	28.141	3	0.0059761	23642	160511_QHF_FH_JSI12i_3	64.394	51.257			1.0568	1.0686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0568	1.0686	NaN	1	0	Median	84779000	41052000	43727000	0	0	0	0	0	0	0	0	0	84779000	41052000	43727000	18147	2194	17198	110643	149236	149236			0	
GELSGDFEK	1	Unmodified	980.44509	0.44509068	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	26.454	26.092	2	6.2592E-05	23246	160511_QHF_FH_JSI12i_1	115.7	98.313			1.2075	1.232	9.9656	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1846	1.1482	NaN	1	1	Median	1.2308	1.322	NaN	1	1	Median	748860000	318790000	430070000	0	0	0	0	0	0	368870000	156220000	212650000	380000000	162570000	217420000	18148	891	17199	110644;110645	149237;149238	149238			2	
GELSTLLYNTHPYR	0	Unmodified	1662.8366	0.83657007	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	2	4	4	4	62.404	60.06	2;3	2.7399E-15	53182	160511_QHF_FH_JSI11i_3	159.65	149.87			0.93247	0.82734	20.991	9	1	Median	1.0765	0.92112	19.453	2	0	Median	0.47616	0.58659	NaN	1	0	Median	1.0192	0.98699	16.397	4	0	Median	0.79361	0.81381	2.332	2	1	Median	875750000	461380000	414360000	96988000	53342000	43647000	71139000	51959000	19181000	366820000	178760000	188070000	340790000	177330000	163470000	18149	3943	17200	110646;110647;110648;110649;110650;110651;110652;110653;110654;110655;110656;110657;110658;110659	149239;149240;149241;149242;149243;149244;149245;149246;149247;149248;149249;149250;149251	149239			13	
GELTDNLVAMAPAAGYHVWLWAVEAFAK	1	Unmodified	3029.5109	0.51094918	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101.01	91.834	3	2.8239E-99	53103	160513_QHF_FH_JSI9Kac_6	184.66	161.44			0.97716	0.83694	NaN	1	0	Median	0.97716	0.83694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119420000	69945000	49478000	119420000	69945000	49478000	0	0	0	0	0	0	0	0	0	18150	3736	17201	110660	149252	149252			1	
GELTTLIHQLQEK	1	Unmodified	1508.8199	0.81985737	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	72.109	71.379	2;3	2.2161E-22	59958	160511_QHF_FH_JSI10i_3	178.81	158.51			0.91904	0.92933	10.857	9	0	Median	1.3406	1.116	14.12	2	0	Median	0.79824	0.91392	6.6487	3	0	Plateau	1.0145	0.95927	8.7023	2	0	Median	0.90746	0.92911	0.033224	2	0	Median	1879600000	899660000	979900000	116840000	47221000	69616000	277570000	146270000	131300000	652780000	304460000	348320000	832380000	401710000	430670000	18151	3328	17202	110661;110662;110663;110664;110665;110666;110667;110668;110669;110670	149253;149254;149255;149256;149257;149258;149259;149260;149261;149262;149263;149264;149265;149266;149267;149268;149269;149270;149271	149260			19	
GELVGGLDIVK	1	Unmodified	1098.6285	0.62847478	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.17	4	2	1				1			3	2	2	1	67.197	65.204	2	7.051E-10	59146	160511_QHF_FH_JSI10i_1	137.98	71.355			0.70283	0.76004	21.39	8	3	Median	0.70532	0.56153	18.958	3	2	Median	0.68947	0.81739	0.77445	2	0	Median	0.77296	0.76654	10.715	2	1	Median	0.8024	0.85836	NaN	1	0	Median	2033600000	1201000000	832550000	595280000	426290000	168990000	446600000	241800000	204790000	628100000	345310000	282790000	363610000	187640000	175970000	18152	595	17203	110671;110672;110673;110674;110675;110676;110677;110678	149272;149273;149274;149275;149276;149277;149278;149279	149275			8	
GEMLSYGDRQEVEIR	0	Unmodified	1780.8414	0.84139745	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.78	45.659	3	4.994E-05	38980	160511_QHF_FH_JSI12i_3	98.694	83.771			1.1037	1.1069	18.277	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3546	1.2596	NaN	1	1	Median	0.89923	0.97271	NaN	1	0	Median	112020000	57782000	54233000	0	0	0	0	0	0	41232000	16762000	24470000	70783000	41021000	29763000	18153	2952	17204	110679;110680	149280;149281;149282	149282			3	
GEMMDLQHGSLFLQTPK	1	2 Oxidation (M)	1962.9179	0.91793321	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.69	1	4	5				3	2		3	5	4	3	59.05	54.689	3	3.3879E-07	47304	160511_QHF_FH_JSI11i_2	123.59	114.18			1.0161	1.062	14.065	14	4	Median	1.181	1.0071	14.786	3	1	Median	0.86426	1.0657	19.627	5	3	Median	1.0158	1.0359	5.1209	3	0	Plateau	1.0376	1.148	6.7339	3	0	Median	1271800000	613530000	658320000	250360000	108000000	142360000	267040000	146020000	121020000	431470000	210100000	221370000	322970000	149400000	173570000	18154	864	17205	110681;110682;110683;110684;110685;110686;110687;110688;110689;110690;110691;110692;110693;110694;110695	149283;149284;149285;149286;149287;149288;149289;149290;149291;149292;149293;149294;149295;149296;149297;149298	149292		401;402	15	
GEMMDLQHGSLFLQTPK	1	Oxidation (M)	1946.923	0.92301859	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.45		16	7					4	9	10	9	8	9	68.283	64.014	2;3	1.7759E-22	55080	160511_QHF_FH_JSI12i_2	171.98	162.57			1.0014	1.0053	21.463	33	7	Median	1.1531	0.97863	17.165	8	1	Median	0.82199	0.9971	26.857	9	3	Median	0.9928	1.0053	26.881	7	0	Median	0.94241	1.052	16.339	9	3	Median	2775200000	1396300000	1378900000	382710000	174610000	208110000	734690000	406260000	328430000	900830000	432240000	468590000	756950000	383180000	373770000	18155	864	17205	110696;110697;110698;110699;110700;110701;110702;110703;110704;110705;110706;110707;110708;110709;110710;110711;110712;110713;110714;110715;110716;110717;110718;110719;110720;110721;110722;110723;110724;110725;110726;110727;110728;110729;110730;110731	149299;149300;149301;149302;149303;149304;149305;149306;149307;149308;149309;149310;149311;149312;149313;149314;149315;149316;149317;149318;149319;149320;149321;149322;149323;149324;149325;149326;149327;149328;149329;149330;149331;149332;149333;149334;149335;149336;149337;149338;149339;149340;149341;149342;149343;149344	149304		401;402	43	
GEMMDLQHGSLFLQTPK	1	Unmodified	1930.9281	0.92810397	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.59	5	11	8						6	5	7	9	9	76.094	73.917	2;3;4	3.7507E-237	66043	160511_QHF_FH_JSI9i_2	349.36	332.42			0.93382	0.9432	18.227	30	9	Median	1.0914	0.90202	4.2799	5	0	Median	0.78588	0.94359	8.1131	7	0	Median	0.95709	0.91014	21.379	9	4	Median	0.94245	1.0022	22.195	9	5	Median	32444000000	16954000000	15490000000	4674800000	2226200000	2448600000	4999900000	2810900000	2189000000	11975000000	6138700000	5835900000	10795000000	5778200000	5016600000	18156	864	17205	110732;110733;110734;110735;110736;110737;110738;110739;110740;110741;110742;110743;110744;110745;110746;110747;110748;110749;110750;110751;110752;110753;110754;110755;110756;110757;110758;110759;110760;110761	149345;149346;149347;149348;149349;149350;149351;149352;149353;149354;149355;149356;149357;149358;149359;149360;149361;149362;149363;149364;149365;149366;149367;149368;149369;149370;149371;149372;149373;149374;149375;149376;149377;149378;149379;149380;149381;149382;149383;149384;149385;149386;149387;149388;149389;149390;149391;149392;149393;149394;149395;149396;149397;149398;149399;149400;149401;149402;149403;149404;149405;149406;149407;149408;149409;149410;149411;149412;149413;149414;149415;149416;149417;149418;149419	149389			75	
GEMMDLQHGSLFLR	0	2 Oxidation (M)	1664.7651	0.76506139	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.75	6.36		3	4				1	4	4	3	5	3	5	54.936	48.776	2;3	2.6193E-05	43065	160511_QHF_FH_JSI11i_3	112.15	104.95			0.96277	1.0619	18.569	12	1	Median	NaN	NaN	NaN	0	0	Median	0.80026	0.93791	28.636	4	1	Median	1.1872	1.0804	2.0188	3	0	Plateau	0.98726	1.0125	8.0451	5	0	Median	1273900000	568910000	704950000	0	0	0	114480000	59146000	55330000	1003500000	434510000	569020000	155850000	75253000	80601000	18157	761	17206	110762;110763;110764;110765;110766;110767;110768;110769;110770;110771;110772;110773;110774;110775;110776;110777	149420;149421;149422;149423;149424;149425;149426;149427;149428;149429;149430;149431;149432;149433;149434;149435	149422		262;263	14	
GEMMDLQHGSLFLR	0	Oxidation (M)	1648.7701	0.77014677	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.5		17	11					4	13	8	10	12	15	64.421	60.334	2;3	3.1066E-65	50971	160511_QHF_FH_JSI12i_3	227.57	209.76			1.0006	1.0331	15.203	43	4	Median	1.2256	1.0516	11.95	8	0	Median	0.86783	1.0435	20.639	10	1	Median	1.066	1.0328	10.44	11	1	Median	0.95823	0.99811	15.741	14	2	Median	6929100000	3564900000	3364200000	587290000	275460000	311830000	1208400000	672420000	535960000	2273500000	1110600000	1162900000	2860000000	1506400000	1353600000	18158	761	17206	110778;110779;110780;110781;110782;110783;110784;110785;110786;110787;110788;110789;110790;110791;110792;110793;110794;110795;110796;110797;110798;110799;110800;110801;110802;110803;110804;110805;110806;110807;110808;110809;110810;110811;110812;110813;110814;110815;110816;110817;110818;110819;110820;110821;110822	149436;149437;149438;149439;149440;149441;149442;149443;149444;149445;149446;149447;149448;149449;149450;149451;149452;149453;149454;149455;149456;149457;149458;149459;149460;149461;149462;149463;149464;149465;149466;149467;149468;149469;149470;149471;149472;149473;149474;149475;149476;149477;149478;149479;149480;149481;149482;149483;149484;149485;149486;149487;149488;149489;149490;149491;149492;149493;149494;149495;149496;149497;149498;149499	149481		262;263	61	
GEMMDLQHGSLFLR	0	Unmodified	1632.7752	0.77523214	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.31		11	8					1	8	7	8	7	6	74.156	70.593	2;3	3.1163E-253	62083	160511_QHF_FH_JSI12i_3	354.75	324.19			1.0189	0.98007	18.693	26	8	Median	1.1838	0.9721	8.8441	7	2	Median	0.83242	0.97405	33.143	8	3	Median	1.0283	1.0031	3.292	6	2	Median	0.95152	0.99908	9.9201	5	1	Median	28027000000	14278000000	13749000000	4009900000	1881200000	2128800000	7255300000	3885200000	3370200000	12962000000	6541000000	6420800000	3799400000	1970400000	1829000000	18159	761	17206	110823;110824;110825;110826;110827;110828;110829;110830;110831;110832;110833;110834;110835;110836;110837;110838;110839;110840;110841;110842;110843;110844;110845;110846;110847;110848;110849;110850	149500;149501;149502;149503;149504;149505;149506;149507;149508;149509;149510;149511;149512;149513;149514;149515;149516;149517;149518;149519;149520;149521;149522;149523;149524;149525;149526;149527;149528;149529;149530;149531;149532;149533;149534;149535;149536;149537;149538;149539;149540;149541;149542;149543;149544;149545;149546;149547;149548;149549;149550;149551;149552;149553;149554;149555;149556;149557;149558;149559;149560;149561;149562	149552			63	
GEMMDLQHGSLFLRTPK	1	Unmodified	1958.9706	0.97063749	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.186	66.7	3;4	0.00011482	55875	160511_QHF_FH_JSI10i_3	79.805	63.499			1.0801	1.033	84.551	2	2	Median	2.2925	1.8782	NaN	1	1	Median	0.50892	0.56812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55857000	19772000	36086000	35671000	5625300	30045000	20187000	14146000	6040100	0	0	0	0	0	0	18160	761	17207	110851;110852	149563;149564	149563			2	
GEMPIAVLYQLLFGNR	0	Oxidation (M)	1835.9604	0.96039038	5858				yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									3	2		1		96.261	87.084	2;3	0.015965	49472	160513_QHF_FH_JSI11Kac_6	44.44	18.474	+		2.1321	2.0229	28.056	3	3	Median	2.1851	1.8746	39.187	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1321	2.0229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3599000000	948600000	2650400000	1200600000	262120000	938460000	0	0	0	2398400000	686480000	1711900000	0	0	0	18161	5858	17208	110853;110854;110855	149565;149566;149567	149565		2767	3	
GEMQVVPVLVHLLSAISSVR	0	Unmodified	2133.198	0.19799489	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.27	92.825	3	1.9615E-19	55548	160513_QHF_FH_JSI10Kac_6	145.04	129.62			0.98034	0.97925	3.0918	2	0	Median	1.1938	1.0009	NaN	1	0	Median	0.80506	0.95807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	458880000	237710000	221170000	203940000	94977000	108960000	254950000	142730000	112210000	0	0	0	0	0	0	18162	1532	17209	110856;110857	149568;149569	149569			2	
GEMVTILAQSR	0	Unmodified	1203.6282	0.6281572	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		1	2						1	1	1	1	1	53.838	51.411	2	0.00071433	45519	160511_QHF_FH_JSI11i_3	81.865	52.056			1.1111	1.0016	13.727	3	2	Median	1.1749	1.0016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1111	1.0373	NaN	1	1	Median	0.79461	0.80513	NaN	1	1	Median	270810000	146160000	124650000	205870000	112080000	93782000	1388700	1388700	0	28910000	14580000	14330000	34647000	18109000	16539000	18163	5268	17210	110858;110859;110860;110861	149570;149571;149572;149573	149570			3	
GENIEDIPK	1	Unmodified	1013.5029	0.50293991	3363	Q86WR0	CCDC25	Coiled-coil domain-containing protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.104	30.504	2	0.00017384	26775	160511_QHF_FH_JSI9i_1	87.258	74.221			0.4274	0.42288	51.044	4	0	Median	0.3634	0.30147	NaN	1	0	Median	0.50268	0.59317	NaN	1	0	Median	0.2521	0.24168	NaN	1	0	Median	0.66799	0.69078	NaN	1	0	Median	392980000	288000000	104990000	119400000	90666000	28734000	58624000	32766000	25858000	156320000	127120000	29200000	58639000	37443000	21197000	18164	3363	17211	110862;110863;110864;110865	149574;149575;149576;149577;149578	149578			2	
GENLVSMTVEGPPPK	1	Unmodified	1553.7759	0.77594365	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	3	2	4	57.655	57.026	2;3	1.1823E-51	51810	160511_QHF_FH_JSI11i_1	213.73	188.08			0.96854	0.93803	22.425	11	5	Median	1.0543	0.87428	0.40752	2	1	Median	0.70091	0.82072	8.1948	3	2	Plateau	1.0198	0.99504	3.1612	2	0	Median	0.79011	0.81999	37.632	4	2	Median	2086200000	1128800000	957410000	324880000	177100000	147780000	601180000	360550000	240630000	459040000	225090000	233950000	701140000	366080000	335060000	18165	1059	17212	110866;110867;110868;110869;110870;110871;110872;110873;110874;110875;110876;110877	149579;149580;149581;149582;149583;149584;149585;149586;149587;149588;149589;149590;149591;149592;149593;149594;149595;149596;149597;149598;149599;149600;149601;149602;149603;149604;149605;149606;149607;149608;149609;149610	149582			32	
GENLVSMTVEGPPPK	1	Oxidation (M)	1569.7709	0.77085827	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		7	6	3					3				1	2	3		48.627	43.699	2;3	0.0015097	38891	160511_QHF_FH_JSI10i_1	96.059	82.123			0.46253	0.49115	45.739	4	2	Median	NaN	NaN	NaN	0	0	Median	0.42249	0.49115	42.504	2	1	Median	0.58492	0.57085	65.141	2	1	Median	NaN	NaN	NaN	0	0	Median	47832000	35882000	11950000	0	0	0	21758000	17516000	4241500	26074000	18366000	7708200	0	0	0	18166	1059	17212	110878;110879;110880;110881;110882;110883	149611;149612;149613;149614;149615;149616	149615		694	5	
GENMSKILK	2	Acetyl (K)	1060.5587	0.55868065	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		50.9	40.235	2	0.0037763	23532	160513_QHF_FH_JSI11Kac_4	80.688	45.881			0.024766	0.024999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.024766	0.024999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3986700	3896700	89998	0	0	0	0	0	0	3986700	3896700	89998	0	0	0	18167	375	17213	110884;110885	149617;149618	149618	192		2	
GENPFEIQDHSQDQQIEGDEEDEEK	1	Unmodified	2944.2119	0.21186245	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			50.847	50.432	3	8.2049E-06	45423	160511_QHF_FH_JSI10i_1	58.284	55.605			1.4498	1.6425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4498	1.6425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20840000	12911000	7928900	0	0	0	20840000	12911000	7928900	0	0	0	0	0	0	18168	2880	17214	110886	149619	149619			1	
GENPFTDSPEEEK	1	Unmodified	1477.6209	0.6208828	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.175	33.931	2	8.3756E-07	29830	160511_QHF_FH_JSI9i_1	89.301	74.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18169	5415	17215	110887	149620	149620			1	
GENSWFSTQVDTVATK	1	Unmodified	1768.8268	0.82679325	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.02	5	7	3				1			4	5	2	5	66.84	65.978	2;3	2.731E-65	60268	160511_QHF_FH_JSI12i_1	270.8	261.37			0.89895	0.92084	18.659	15	0	Median	1.198	0.98735	20.33	4	0	Median	0.6788	0.81822	22.507	4	0	Linear	0.88673	0.86336	0.65675	2	0	Median	0.83239	0.88385	17.038	5	0	Median	5268500000	2709400000	2559100000	1185100000	552810000	632300000	1345100000	744100000	601050000	1244900000	667720000	577220000	1493300000	744750000	748530000	18170	895	17216	110888;110889;110890;110891;110892;110893;110894;110895;110896;110897;110898;110899;110900;110901;110902;110903	149621;149622;149623;149624;149625;149626;149627;149628;149629;149630;149631;149632;149633;149634;149635;149636;149637;149638;149639;149640;149641;149642;149643;149644;149645;149646;149647;149648;149649;149650;149651;149652;149653;149654	149634			33	
GENVTVENQPR	0	Unmodified	1241.6	0.60002819	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.687	13.988	2	0.00041677	11714	160511_QHF_FH_JSI12i_1	80.706	62.394			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18171	3962	17217	110904;110905	149655;149656	149655			2	
GEPAAAAAPEAGASPVEK	1	Unmodified	1621.7948	0.79476484	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	5.22	8			5	6					2	5	6	6	36.427	31.068	2;3	2.4491E-41	27236	160511_QHF_FH_JSI9i_1	207.97	186.4			1.117	1.0773	19.869	19	0	Median	0.91686	0.75412	4.8199	2	0	Median	0.70909	0.8441	2.8641	5	0	Median	1.183	1.134	9.6953	6	0	Median	1.176	1.2472	6.2522	6	0	Median	5633400000	2713700000	2919700000	1206000000	584770000	621270000	1406300000	746790000	659480000	1448100000	598980000	849100000	1573100000	783160000	789900000	18172	1329	17218	110906;110907;110908;110909;110910;110911;110912;110913;110914;110915;110916;110917;110918;110919;110920;110921;110922;110923;110924	149657;149658;149659;149660;149661;149662;149663;149664;149665;149666;149667;149668;149669;149670;149671;149672;149673;149674;149675;149676;149677;149678;149679;149680;149681;149682;149683;149684;149685;149686;149687;149688;149689;149690;149691;149692;149693	149682			37	
GEPAPPPGK	1	Unmodified	848.43922	0.43921744	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0			By MS/MS		12	0					1							1		12.291	5.0245	2	0.0054739	4124	160513_QHF_FH_JSI11Kac_2	65.252	49.871			1.3686	1.2793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3686	1.2793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1600900	691780	909160	0	0	0	0	0	0	1600900	691780	909160	0	0	0	18173	3341	17219	110925	149694	149694			1	
GEPETFLPLDYLEVKPTDEK	2	Unmodified	2319.1522	0.15220971	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	97.477	97.345	3	0.024047	88351	160511_QHF_FH_JSI12i_1	29.444	25.916			1.2088	1.4219	8.0257	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2088	1.4219	NaN	1	0	Median	1.3408	1.3145	NaN	1	0	Median	1.5082	1.5434	NaN	1	0	Median	101580000	48631000	52950000	0	0	0	46853000	25547000	21306000	28217000	13339000	14878000	26511000	9744700	16766000	18174	2560	17220	110926;110927;110928	149695;149696;149697;149698	149697			3	
GEPGAAPLSAPAFSLVFPFLK	1	Unmodified	2115.1405	0.14046323	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.15		7	2						1	2	1	3	4	102.58	101.57	2;3	2.4462E-24	88761	160511_QHF_FH_JSI12i_2	211.13	199.15			0.884	0.95292	10.76	10	1	Median	1.1868	1.0168	8.1006	2	0	Median	0.83171	1.0135	NaN	1	0	Median	0.98978	0.93736	5.1631	3	1	Median	0.81896	0.88078	13.08	4	0	Median	931740000	479170000	452570000	172300000	80136000	92164000	160940000	86420000	74517000	290290000	152580000	137710000	308220000	160030000	148190000	18175	3860	17221	110929;110930;110931;110932;110933;110934;110935;110936;110937;110938	149699;149700;149701;149702;149703;149704;149705;149706;149707;149708;149709;149710;149711;149712	149702			14	
GEPGPNDVRGGEPDGSAR	0	Unmodified	1765.798	0.79795273	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									1	1	2	1	17.595	17.112	3	0.00013376	14532	160511_QHF_FH_JSI10i_1	64.507	54.168			0.94477	1.0391	32.711	4	1	Median	2.0665	1.7002	NaN	1	1	Median	0.83815	0.9848	NaN	1	0	Median	0.81444	0.77873	NaN	1	0	Median	1.065	1.0964	NaN	1	0	Median	151120000	64529000	86587000	43545000	15214000	28331000	28187000	14256000	13932000	32469000	16176000	16293000	46914000	18883000	28031000	18176	3132	17222	110939;110940;110941;110942;110943	149713;149714;149715	149714			3	
GEPMPSELKL	1	Unmodified	1099.5583	0.5583463	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.444	58.802	2	0.00041895	52196	160511_QHF_FH_JSI9i_1	75.378	59.497			0.83124	0.77077	11.712	3	0	Plateau	0.97022	0.77772	NaN	1	0	Median	0.83124	0.94822	NaN	1	0	Median	0.82113	0.77077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125880000	69731000	56147000	39764000	22114000	17650000	35396000	19686000	15710000	50718000	27931000	22788000	0	0	0	18177	5249	17223	110944;110945;110946;110947	149716;149717;149718;149719;149720;149721;149722	149722			7	
GEPPLPEEDLSK	1	Unmodified	1309.6402	0.64016167	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	1	3	46.464	45.678	2	3.8674E-12	41214	160511_QHF_FH_JSI11i_1	155	130.23			0.86973	0.89298	7.5921	5	2	Median	0.98705	0.82278	11.578	2	1	Median	0.78364	0.91247	NaN	1	0	Median	0.86973	0.86019	NaN	1	0	Median	0.85565	0.90226	NaN	1	1	Median	1506200000	809790000	696390000	449670000	217150000	232520000	338190000	200960000	137230000	421690000	221950000	199740000	296640000	169730000	126910000	18178	283	17224	110948;110949;110950;110951;110952;110953;110954	149723;149724;149725;149726;149727;149728;149729;149730;149731;149732;149733;149734;149735;149736;149737;149738;149739;149740	149725			18	
GEPPNSDMHPMR	0	Unmodified	1366.5758	0.57580405	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	3	3	16.397	15.768	3	0.00053237	12713	160511_QHF_FH_JSI12i_2	51.875	48.343			0.9434	1.0417	24.498	9	1	Median	1.3071	1.1282	40.867	2	0	Median	0.76989	0.94791	29.038	2	1	Median	1.0392	1.0603	24.562	3	0	Median	0.83905	0.91493	18.352	2	0	Median	324780000	158520000	166260000	42608000	15044000	27563000	73476000	42316000	31160000	150310000	69554000	80754000	58386000	31602000	26784000	18179	5206	17225	110955;110956;110957;110958;110959;110960;110961;110962;110963;110964	149741;149742;149743;149744;149745;149746	149742			5	
GEPVTNLVPSMVSLEETK	1	Unmodified	1928.9765	0.97649395	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	88.752	88.275	2	8.4473E-11	80389	160511_QHF_FH_JSI12i_1	107.65	95.285			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18180	2588	17226	110965	149747	149747			1	
GEQAEEVPVNR	0	Unmodified	1226.5891	0.58912916	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	21.606	17.684	2	3.262E-14	15132	160511_QHF_FH_JSI11i_1	154.84	107.19			1.0928	1.1732	17.842	8	1	Median	1.3706	1.1412	NaN	1	0	Median	0.95173	1.1089	11.874	2	0	Median	1.1032	1.0675	18.387	2	0	Median	1.1836	1.246	26.916	3	1	Median	540320000	239360000	300960000	116970000	54575000	62397000	126540000	61200000	65341000	148230000	59338000	88894000	148580000	64244000	84331000	18181	950	17227	110966;110967;110968;110969;110970;110971;110972;110973	149748;149749;149750;149751;149752;149753;149754;149755;149756;149757;149758;149759	149749			12	
GEQQIQK	1	Unmodified	829.42938	0.42938104	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	5.629	3.9063	2	1.5915E-05	3095	160511_QHF_FH_JSI11i_1	143	89.45			0.84897	0.8686	6.5577	5	0	Median	1.1811	0.95985	NaN	1	0	Median	0.73734	0.8686	NaN	1	0	Median	0.92129	0.90189	10.247	2	0	Median	0.81812	0.86828	NaN	1	0	Median	3323600000	1761600000	1562100000	647250000	313250000	334010000	948020000	554800000	393220000	895900000	436520000	459380000	832440000	456990000	375450000	18182	5658	17228	110974;110975;110976;110977;110978	149760;149761;149762;149763;149764;149765;149766;149767	149761			8	
GEQYVVIIQNK	1	Unmodified	1289.698	0.69795133	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.6	0.8						3	1	1			2	2	1	59.078	49.363	2;3	1.7137E-07	26399	160513_QHF_FH_JSI11Kac_3	114.5	95.225			1.1897	1.3483	26.634	4	3	Median	NaN	NaN	NaN	0	0	Median	0.85802	1.0195	21.79	2	1	Median	1.5739	1.5334	NaN	1	1	Median	1.4171	1.5286	NaN	1	1	Median	22891000	9357600	13533000	0	0	0	6355100	3448900	2906100	4141000	1829600	2311500	12395000	4079100	8315500	18183	5070	17229	110979;110980;110981;110982;110983	149768;149769;149770;149771;149772	149768			5	
GERDSQTQAILTK	1	Unmodified	1445.7474	0.74742071	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		19.06	18.666	3	0.0086039	15904	160511_QHF_FH_JSI9i_2	43.184	29.154			0.89978	0.95658	25.579	2	1	Median	NaN	NaN	NaN	0	0	Median	0.66014	0.79831	NaN	1	0	Median	1.2264	1.1462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92927000	48791000	44136000	0	0	0	43170000	24764000	18406000	49756000	24027000	25729000	0	0	0	18184	2349	17230	110984;110985;110986	149773;149774;149775	149774			3	
GERELEPITTSQALQIAGR	0	Unmodified	2068.0913	0.091281208	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				63.844	62.911	3	0.00013173	55346	160511_QHF_FH_JSI9i_2	57.989	47.932			2.4629	2.1497	NaN	1	0	Median	2.4629	2.1497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45663000	15756000	29907000	45663000	15756000	29907000	0	0	0	0	0	0	0	0	0	18185	3466	17231	110987	149776	149776			1	
GERLNQDQLDAVSK	1	Unmodified	1571.7903	0.79034816	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	28.113	28.068	3	0.0027131	23428	160511_QHF_FH_JSI12i_3	52.599	46.694			0.86515	0.86719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86515	0.86719	NaN	1	0	Median	52876000	29575000	23301000	0	0	0	0	0	0	0	0	0	52876000	29575000	23301000	18186	2536	17232	110988	149777	149777			1	
GESDDFHMDFDSAVAPR	0	Unmodified	1894.7792	0.77919113	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		63.285	62.842	3	0.055677	57094	160511_QHF_FH_JSI11i_1	19.934	15.385			1.5146	1.4724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5146	1.4724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17590000	5066300	12523000	0	0	0	0	0	0	17590000	5066300	12523000	0	0	0	18187	999	17233	110989	149778	149778			1	
GESDPAYQQYQDAANNLR	0	Unmodified	2038.8981	0.89806071	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.335	51.664	2	2.8475E-81	46698	160511_QHF_FH_JSI11i_1	242.43	232.1			1.0306	0.99068	13.824	3	0	Plateau	0.99636	0.8406	NaN	1	0	Median	0.66374	0.75269	NaN	1	0	Median	1.0306	0.99068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126260000	61590000	64668000	32770000	15068000	17702000	31784000	17554000	14230000	61703000	28967000	32736000	0	0	0	18188	1034	17234	110990;110991;110992	149779;149780;149781;149782;149783;149784	149779			6	
GESDPAYQQYQDAANNLREDYK	1	Unmodified	2574.1259	0.12588839	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								4	2	3	3	60.184	59.418	2;3	3.697E-29	53967	160511_QHF_FH_JSI10i_1	179.42	164.8			1.1472	1.1019	15.533	11	3	Median	1.0805	0.88993	6.3913	3	0	Plateau	0.85805	1.0197	18.816	2	0	Median	1.1505	1.1019	7.1412	3	2	Plateau	1.0768	1.1407	25.19	3	1	Median	3957300000	2004700000	1952600000	862200000	388690000	473500000	1115300000	649930000	465370000	1142000000	558450000	583510000	837840000	407580000	430260000	18189	1034	17235	110993;110994;110995;110996;110997;110998;110999;111000;111001;111002;111003;111004	149785;149786;149787;149788;149789;149790;149791;149792;149793;149794;149795;149796;149797;149798;149799;149800;149801;149802;149803;149804;149805;149806;149807;149808;149809;149810;149811	149800			27	
GESDPAYQQYQDAANNLREDYKFHHTFSTEIAK	2	Acetyl (K)	3914.7772	0.77722388	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		78.945	69.63	5	2.7563E-15	38164	160513_QHF_FH_JSI11Kac_6	91.398	86.342			0.2887	0.26992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2887	0.26992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	183170000	147510000	35658000	0	0	0	0	0	0	183170000	147510000	35658000	0	0	0	18190	1034	17236	111005	149812	149812	862		1	
GESENAGTNQETR	0	Unmodified	1391.5913	0.591314	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.2645	4.9491	2	8.6622E-82	2937	160511_QHF_FH_JSI12i_1	240.85	223.03			0.80303	0.8769	36.64	4	0	Median	1.6311	1.3756	NaN	1	0	Median	0.94643	1.1006	NaN	1	0	Median	0.66386	0.63801	NaN	1	0	Median	0.68135	0.69866	NaN	1	0	Median	168760000	84221000	84536000	36599000	11152000	25446000	49784000	25342000	24442000	48415000	28544000	19871000	33959000	19182000	14777000	18191	2263	17237	111006;111007;111008;111009	149813;149814;149815;149816	149814			4	
GESFYQDR	0	Unmodified	1000.425	0.42502394	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	19.659	16.948	2	8.9383E-05	14694	160511_QHF_FH_JSI10i_1	131.06	113.03			0.97568	1.0104	7.7295	11	0	Median	1.229	1.0429	4.4724	2	0	Median	0.82009	0.97655	11.48	3	0	Median	0.98772	0.97211	7.971	3	0	Median	0.97568	1.0292	6.5515	3	0	Median	932600000	468320000	464280000	238980000	102430000	136550000	216730000	122070000	94664000	224340000	116620000	107720000	252550000	127200000	125350000	18192	1818	17238	111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020	149817;149818;149819;149820;149821;149822;149823;149824;149825;149826;149827;149828;149829;149830	149824			14	
GESGILGK	1	Unmodified	759.41267	0.41266834	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	17.827	17.236	2	0.0007303	15099	160511_QHF_FH_JSI12i_1	98.997	57.494			0.81902	0.90352	7.278	6	0	Median	1.118	0.9383	0.30565	2	0	Median	0.76935	0.91805	7.2926	2	0	Median	0.82802	0.80762	NaN	1	0	Median	0.81013	0.83405	NaN	1	0	Median	4080200000	2157200000	1923000000	1636400000	781020000	855420000	1594000000	877380000	716630000	779030000	459010000	320020000	70688000	39800000	30888000	18193	308	17239	111021;111022;111023;111024;111025;111026	149831	149831			1	
GESGILGKDGLK	2	Acetyl (K)	1214.6507	0.65066678	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	59.287	48.625	2	0.0021412	27311	160513_QHF_FH_JSI12Kac_4	77.379	42.847			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1584900	0	1584900	0	0	0	0	0	0	0	0	0	1584900	0	1584900	18194	308	17240	111027	149832	149832	162		1	
GESGQSWPR	0	Unmodified	1002.4519	0.45190739	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	6.15	5	5	2				4	3		5	3	5	6	16.094	12.731	2	8.8998E-24	12208	160511_QHF_FH_JSI12i_1	195.88	166.51			1.0414	1.1111	21.751	18	3	Median	0.99808	0.83466	17.96	5	0	Median	1.073	1.2709	8.9224	3	0	Median	1.1813	1.1668	1.8853	4	2	Median	0.91593	0.97414	23.899	6	1	Median	4676000000	2197700000	2478400000	514080000	247720000	266360000	1246400000	593580000	652850000	1854900000	811590000	1043300000	1060700000	544760000	515910000	18195	2642	17241	111028;111029;111030;111031;111032;111033;111034;111035;111036;111037;111038;111039;111040;111041;111042;111043;111044;111045;111046	149833;149834;149835;149836;149837;149838;149839;149840;149841;149842;149843;149844;149845;149846;149847;149848;149849;149850;149851;149852;149853;149854	149839			22	
GESIPIR	0	Unmodified	770.42865	0.42865276	525;2829	O75436;Q4G0F5	VPS26A;VPS26B	Vacuolar protein sorting-associated protein 26A;Vacuolar protein sorting-associated protein 26B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	23.271	22.6	2	0.0035003	19267	160511_QHF_FH_JSI9i_1	104.11	48.085			1.2681	1.3404	8.8656	6	1	Median	1.6268	1.3623	15.406	2	0	Median	1.1705	1.4039	3.7267	2	1	Median	1.3583	1.3139	NaN	1	0	Median	1.1656	1.2192	NaN	1	0	Median	1117700000	507510000	610160000	298360000	109530000	188830000	370360000	179560000	190800000	211110000	100440000	110670000	237840000	117980000	119860000	18196	525;2829	17242	111047;111048;111049;111050;111051;111052	149855;149856;149857;149858;149859;149860	149858			6	
GESLGIK	1	Unmodified	702.3912	0.39120462	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.85	4		2			2	2			2	3	2	3	20.682	16.797	2	0.0015044	10250	160513_QHF_FH_JSI10Kac_4	107.43	47.789			0.91207	1.0018	40.817	9	1	Median	0.69345	0.56347	89.138	2	1	Median	0.86989	1.0419	4.2892	3	0	Median	0.98965	0.95674	NaN	1	0	Median	0.91207	1.0018	7.6061	3	0	Median	2204800000	1279500000	925240000	465150000	250490000	214670000	605810000	330440000	275380000	550960000	355300000	195670000	582820000	343290000	239530000	18197	1191	17243	111053;111054;111055;111056;111057;111058;111059;111060;111061;111062	149861;149862;149863;149864;149865;149866;149867;149868;149869;149870;149871	149865			11	
GESLGIKHEEAPGHRPTTNPNASK	2	Acetyl (K)	2568.2681	0.26807638	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		34.407	25.039	4	0.0053226	14010	160513_QHF_FH_JSI11Kac_6	51.645	37.914			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6418700	6418700	0	0	0	0	0	0	0	6418700	6418700	0	0	0	0	18198	1191	17244	111063	149872	149872	1044		1	
GESNQMNLDTASEK	1	Unmodified	1522.657	0.65695073	4275	Q99496	RNF2	E3 ubiquitin-protein ligase RING2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.143	22.748	2	4.855E-17	19759	160511_QHF_FH_JSI11i_1	131.06	102.1			0.84538	0.90653	29.819	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64717	0.7342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1043	1.1193	NaN	1	1	Median	51026000	27104000	23922000	0	0	0	22395000	14816000	7579300	0	0	0	28631000	12288000	16343000	18199	4275	17245	111064;111065;111066	149873;149874;149875	149873			3	
GESPVDYDGGR	0	Unmodified	1150.4891	0.48908076	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				2	3	2	3	23.236	17.527	2	9.9985E-30	17099	160511_QHF_FH_JSI12i_1	190.88	181.49			0.99221	1.0055	13.161	10	0	Median	1.0604	0.86666	12.595	2	0	Median	0.77201	0.87706	10.134	3	0	Median	1.1073	1.0778	2.5373	2	0	Median	1.0197	1.0842	8.4473	3	0	Median	4172200000	2096100000	2076100000	940680000	424020000	516660000	973730000	531160000	442570000	1069400000	538900000	530470000	1188400000	601970000	586400000	18200	2628	17246	111067;111068;111069;111070;111071;111072;111073;111074;111075;111076	149876;149877;149878;149879;149880;149881;149882;149883;149884;149885;149886;149887;149888;149889;149890	149879			14	
GESQTDIEITR	0	Unmodified	1247.5994	0.59935949	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.911	26.363	2	4.632E-05	23589	160511_QHF_FH_JSI12i_1	96.113	75.375			0.73939	0.75568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73939	0.75568	NaN	1	0	Median	54884000	31055000	23829000	0	0	0	0	0	0	0	0	0	54884000	31055000	23829000	18201	1655	17247	111077	149891	149891			1	
GESQTDIEITREEDFTR	0	Unmodified	2024.9287	0.92869214	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	3	3	4	47.813	46.99	2;3	9.1116E-11	41320	160511_QHF_FH_JSI10i_2	122.29	113.98			0.97268	0.9937	19.855	13	2	Median	1.0859	0.91616	17.681	3	1	Plateau	0.8549	1.0056	7.0278	3	1	Median	0.97432	0.98512	1.0677	3	0	Median	0.99368	1.0707	17.926	4	0	Median	2146300000	1155500000	990780000	395970000	201370000	194590000	634450000	369010000	265440000	539800000	290300000	249500000	576070000	294830000	281240000	18202	1655	17248	111078;111079;111080;111081;111082;111083;111084;111085;111086;111087;111088;111089;111090	149892;149893;149894;149895;149896;149897;149898;149899;149900;149901;149902;149903;149904;149905;149906;149907;149908;149909;149910;149911	149910			19	
GESRPETPK	1	Unmodified	999.49852	0.49852324	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	no	0	0	0	1	By matching		By MS/MS	By matching	2.25	0.433		3	1							1		1	2	5.5426	5.2677	3	0.024315	3071	160511_QHF_FH_JSI11i_2	27.864	13.657			1.0602	1.0683	27.261	4	0	Median	0.87737	0.74696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1505	1.1599	NaN	1	0	Median	1.1382	1.1838	26.138	2	0	Median	366130000	180820000	185310000	60331000	31668000	28663000	0	0	0	88927000	41860000	47067000	216870000	107300000	109580000	18203	3063	17249	111091;111092;111093;111094	149912	149912			1	
GETASEGTEAK	1	Unmodified	1078.4778	0.47784737	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	12	0					2							1	1	5.5358	-1.6728	2	0.00075296	1630	160513_QHF_FH_JSI11Kac_2	91.867	72.08			1.2986	1.3305	15.626	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5792	1.4859	NaN	1	0	Median	1.0678	1.1913	NaN	1	0	Median	2904600	1363300	1541400	0	0	0	0	0	0	1645500	665560	979930	1259200	697720	561440	18204	560	17250	111095;111096	149913	149913			0	
GETAVPGAPEALR	0	Unmodified	1266.6568	0.65681479	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	1	3	44.24	40.744	2	9.064E-17	36815	160511_QHF_FH_JSI12i_1	136.02	92.253			1.0515	1.165	21.915	6	3	Median	1.4043	1.1631	NaN	1	0	Median	0.98094	1.1636	0.38995	2	1	Median	0.74157	0.71765	NaN	1	1	Median	1.1937	1.282	4.2305	2	1	Median	2150200000	1128300000	1022000000	499030000	156540000	342490000	421050000	197150000	223900000	644530000	407580000	236950000	585610000	366990000	218620000	18205	23	17251	111097;111098;111099;111100;111101;111102;111103	149914;149915;149916;149917;149918;149919;149920;149921	149916			8	
GETDLIQK	1	Unmodified	902.47091	0.4709115	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	2	2	26.389	21.977	2	1.1799E-06	19302	160511_QHF_FH_JSI11i_1	162.5	95.472			0.92342	0.93357	33.005	8	1	Median	1.4999	1.241	NaN	1	0	Median	0.94357	1.1208	48.483	3	1	Median	0.94973	0.92936	5.2875	2	0	Median	0.77014	0.83275	11.515	2	0	Median	2282900000	1160000000	1123000000	554470000	257790000	296690000	459720000	272250000	187470000	579960000	258310000	321650000	688770000	371620000	317150000	18206	1544	17252	111104;111105;111106;111107;111108;111109;111110;111111	149922;149923;149924;149925;149926;149927;149928;149929;149930;149931;149932;149933;149934	149923			13	
GETESEEFEK	1	Unmodified	1183.4881	0.48807771	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.917	15.473	2	0.0057423	13163	160511_QHF_FH_JSI12i_1	63.184	49.466			0.50126	0.53218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50126	0.53218	NaN	1	1	Median	22103000	15872000	6230400	0	0	0	0	0	0	0	0	0	22103000	15872000	6230400	18207	2233	17253	111112	149935	149935			1	
GETHQGIGLFPSNFVTADLTAEPEMIK	1	Unmodified	2901.4219	0.4218594	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	101.12	101.02	3	3.5286E-49	87737	160511_QHF_FH_JSI12i_3	183.58	173.86			0.90006	0.96518	22.609	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1662	1.3998	NaN	1	0	Median	0.99239	1.0174	NaN	1	0	Median	0.80495	0.87283	6.7771	2	0	Median	657190000	334820000	322370000	0	0	0	118400000	49095000	69308000	161150000	82690000	78461000	377640000	203040000	174600000	18208	3883	17254	111113;111114;111115;111116	149936;149937;149938	149938			3	
GETHQGIGLFPSNFVTADLTAEPEMIK	1	Oxidation (M)	2917.4168	0.41677403	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	98.569	98.588	3	4.1936E-06	85432	160511_QHF_FH_JSI12i_3	56.914	50.338			1.0015	1.0684	23.335	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0015	1.0684	23.335	2	2	Median	38917000	20111000	18807000	0	0	0	0	0	0	0	0	0	38917000	20111000	18807000	18209	3883	17254	111117;111118	149939;149940	149940		2322	2	
GETIQGLR	0	Unmodified	872.47158	0.4715802	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	21.619	20.739	2	0.0021269	17163	160511_QHF_FH_JSI12i_2	91.626	35.95			0.88053	1.0306	8.617	4	4	Median	NaN	NaN	NaN	0	0	Median	0.83683	1.0319	NaN	1	1	Median	1.0322	1.0388	NaN	1	1	Median	0.85271	0.94627	11.899	2	2	Median	356640000	185110000	171530000	0	0	0	77566000	43421000	34146000	122560000	60505000	62060000	156510000	81186000	75326000	18210	2518	17255	111119;111120;111121;111122	149941;149942;149943;149944	149942			4	
GETLPTEAR	0	Unmodified	972.48762	0.4876242	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		18.057	17.871	2	0.0024183	15314	160511_QHF_FH_JSI10i_1	65.246	28.405			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18211	3482	17256	111123;111124	149945;149946	149946			2	
GETPRVEEVGPYTYR	0	Unmodified	1751.8479	0.84786304	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	41.226	40.412	3	5.8284E-05	35548	160511_QHF_FH_JSI10i_2	96.208	78.989			0.82033	0.83234	20.388	5	0	Median	0.80514	0.67272	NaN	1	0	Median	0.66257	0.80477	NaN	1	0	Median	0.83652	0.83234	NaN	1	0	Median	0.9652	1.0226	20.127	2	0	Median	411360000	193170000	218190000	64044000	32621000	31423000	90338000	41696000	48642000	100220000	45680000	54538000	156760000	73171000	83585000	18212	2489	17257	111125;111126;111127;111128;111129	149947;149948;149949;149950;149951;149952	149950			6	
GETVPLDVLQIK	1	Unmodified	1310.7446	0.74456717	2857	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.484	81.014	2	2.4922E-05	73712	160511_QHF_FH_JSI11i_1	109.42	99.187			1.0206	1.094	9.1034	4	0	Median	1.5286	1.2464	NaN	1	0	Median	0.97453	1.1482	NaN	1	0	Median	1.0614	1.0424	NaN	1	0	Median	0.9814	1.025	NaN	1	0	Median	157230000	79664000	77571000	34674000	15490000	19184000	42763000	23713000	19051000	41673000	20109000	21564000	38125000	20353000	17772000	18213	2857	17258	111130;111131;111132;111133	149953;149954;149955;149956;149957;149958	149953			6	
GEVAPDAK	1	Unmodified	785.39193	0.3919329	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	5.56	4				4	2				1	4	3	2	8.1393	4.3386	2	0.0013022	5157	160511_QHF_FH_JSI12i_1	91.318	51.215			0.65762	0.34971	46.872	8	2	Linear	0.7411	0.6078	NaN	1	1	Median	0.60015	0.70072	74.126	2	1	Median	0.32529	0.31095	43.403	3	0	Plateau	0.51936	0.55233	69.009	2	0	Median	3527700000	2675600000	852070000	707910000	462840000	245070000	968300000	771100000	197200000	1028200000	815650000	212520000	823270000	626000000	197270000	18214	926	17259	111134;111135;111136;111137;111138;111139;111140;111141;111142;111143	149959;149960;149961;149962;149963;149964;149965;149966;149967;149968;149969	149962			11	
GEVAQMAAYYEHR	0	Unmodified	1523.6827	0.68271197	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	41.685	40.892	3	7.0846E-05	35164	160511_QHF_FH_JSI12i_2	73.887	71.816			1.0236	1.0703	9.7192	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.0703	9.7192	2	1	Median	189780000	96950000	92828000	0	0	0	0	0	0	0	0	0	189780000	96950000	92828000	18215	1506	17260	111144;111145	149970;149971	149970			2	
GEVDAVTGKPK	2	Acetyl (K)	1141.5979	0.59790293	2971	Q5TGY3	AHDC1	AT-hook DNA-binding motif-containing protein 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	34.546	25.986	2	5.4077E-05	12602	160513_QHF_FH_JSI12Kac_2	100.48	70.222			0.87529	0.96263	8.5914	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8204	0.90589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93386	1.0229	NaN	1	0	Median	2992500	1604900	1387600	0	0	0	1156400	635300	521100	0	0	0	1836100	969560	866500	18216	2971	17261	111146;111147	149972;149973;149974;149975	149975	2730		4	
GEVDEEDAALYR	0	Unmodified	1365.6048	0.6048388	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.047	35.74	2	1.5797E-05	32117	160511_QHF_FH_JSI11i_1	123.11	112.88			0.78086	0.82382	7.032	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74829	0.86582	NaN	1	0	Median	0.81484	0.78386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90550000	42841000	47709000	0	0	0	38650000	19779000	18872000	51900000	23062000	28837000	0	0	0	18217	4908	17262	111148;111149;111150	149976;149977;149978;149979	149976			4	
GEVDVDVPK	1	Unmodified	956.48148	0.48147619	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	32.682	32.081	2	3.0672E-06	28632	160511_QHF_FH_JSI11i_1	124.23	42.683			0.7772	0.7451	16.531	4	1	Median	1.0147	0.8403	NaN	1	1	Median	0.55736	0.65889	NaN	1	0	Median	0.67753	0.66068	NaN	1	0	Median	0.89154	0.90862	NaN	1	0	Median	737180000	428740000	308440000	152310000	78237000	74070000	192000000	132980000	59023000	207240000	118380000	88866000	185620000	99139000	86484000	18218	2286	17263	111151;111152;111153;111154;111155	149980;149981;149982;149983;149984;149985	149980			6	
GEVDVSLANVEGDLK	1	Unmodified	1543.773	0.77296676	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			74.087	73.531	2	5.058E-07	66602	160511_QHF_FH_JSI10i_1	138.42	106.1			0.89287	0.86412	12.921	2	0	Median	1.1722	0.94679	NaN	1	0	Median	0.6801	0.78867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152260000	84308000	67954000	49478000	21018000	28459000	102780000	63290000	39495000	0	0	0	0	0	0	18219	2286	17264	111156;111157	149986;149987	149987			2	
GEVDVTHDSEPK	1	Unmodified	1311.5943	0.59427411	5021	Q9NV35	NUDT15	Probable 8-oxo-dGTP diphosphatase NUDT15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	14.362	13.92	3	6.9487E-05	11269	160511_QHF_FH_JSI9i_1	57.567	43.978			0.94522	0.94023	11.9	4	1	Median	1.0475	0.84614	NaN	1	0	Median	0.87838	1.0414	NaN	1	1	Median	0.88478	0.84886	NaN	1	0	Median	1.0098	1.0415	NaN	1	0	Median	198530000	96104000	102430000	49459000	23411000	26048000	53188000	25075000	28112000	31140000	17013000	14127000	64743000	30605000	34139000	18220	5021	17265	111158;111159;111160;111161	149988;149989;149990	149990			3	
GEVFNELVGK	1	Unmodified	1090.5659	0.56587452	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	55.141	54.335	2	2.1128E-09	49110	160511_QHF_FH_JSI11i_1	130.66	101.49			0.95002	0.94186	21.693	8	0	Median	0.8666	0.7209	24.668	2	0	Median	0.83961	1.0018	18.064	2	0	Median	1.0058	1.0055	19.577	2	0	Median	0.99761	1.0678	8.4166	2	0	Median	2706000000	1367500000	1338500000	445270000	226060000	219210000	582910000	320650000	262250000	1136800000	560920000	575930000	541020000	259900000	281120000	18221	841	17266	111162;111163;111164;111165;111166;111167;111168;111169;111170	149991;149992;149993;149994;149995;149996;149997;149998;149999;150000;150001;150002;150003	149992			13	
GEVFSVLEFAPSNHSFK	1	Unmodified	1893.9261	0.92611336	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	85.425	85.349	3	5.398E-23	74165	160511_QHF_FH_JSI12i_3	151.8	146.51			1.0323	1.0135	0.66666	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0836	1.0087	NaN	1	0	Median	0.98345	1.0182	NaN	1	0	Median	288020000	143580000	144440000	0	0	0	0	0	0	103930000	52984000	50946000	184090000	90594000	93492000	18222	4582	17267	111171;111172	150004;150005;150006;150007;150008	150008			5	
GEVGLLFTNR	0	Unmodified	1104.5928	0.59275797	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			69.465	58.825	2	0.0018605	29602	160513_QHF_FH_JSI10Kac_5	82.749	51.676			1.4027	1.6623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4027	1.6623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5217900	2056500	3161400	0	0	0	5217900	2056500	3161400	0	0	0	0	0	0	18223	5365	17268	111173	150009	150009			1	
GEVITTYCPANNEPIAR	0	Unmodified	1903.9098	0.90981137	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.71	51.037	2	2.109E-11	46142	160511_QHF_FH_JSI11i_1	153.38	135.71			0.89729	0.83624	22.342	4	0	Median	0.99217	0.81003	NaN	1	0	Median	0.72492	0.8633	NaN	1	0	Median	0.81148	0.79055	NaN	1	0	Median	1.2395	1.2751	NaN	1	0	Median	182070000	96288000	85780000	34470000	17137000	17333000	37074000	22782000	14292000	58458000	32514000	25944000	52065000	23854000	28211000	18224	1659	17269	111174;111175;111176;111177	150010;150011;150012;150013;150014;150015;150016;150017	150010			8	
GEVLDPTAANR	0	Unmodified	1141.5728	0.57275081	4095	Q96GQ5	C16orf58	RUS1 family protein C16orf58	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	26.697	26.328	2	0.00056876	23451	160511_QHF_FH_JSI12i_1	70.056	61.836			1.509	1.5069	15.353	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3976	1.3518	NaN	1	0	Median	1.6293	1.6797	NaN	1	0	Median	92327000	34529000	57799000	0	0	0	0	0	0	40571000	16207000	24364000	51757000	18322000	33435000	18225	4095	17270	111178;111179	150018;150019	150019			1	
GEVLGDVLQLETLK	1	Unmodified	1512.8399	0.83992412	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	3	3	5	93.774	93.435	2;3	2.1989E-21	80600	160511_QHF_FH_JSI12i_2	174.68	160.52			1.166	0.93422	38.72	11	6	Plateau	1.1345	1.0002	12.539	2	2	Median	1.0662	1.3167	20.054	3	2	Median	1.2125	1.1954	64.754	3	1	Plateau	1.1768	1.2949	28.164	3	1	Plateau	256580000	118250000	138340000	64111000	29199000	34912000	71207000	34929000	36278000	63764000	29168000	34596000	57501000	24949000	32552000	18226	2587	17271	111180;111181;111182;111183;111184;111185;111186;111187;111188;111189;111190;111191;111192	150020;150021;150022;150023;150024;150025;150026;150027;150028;150029;150030;150031;150032;150033;150034;150035	150022			16	
GEVLISR	0	Unmodified	772.4443	0.44430282	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.1	1	5					3	1		1	2	4	3	24.83	20.797	2	0.010719	17824	160511_QHF_FH_JSI9i_2	73.616	15.449			0.94115	1.0077	12.787	10	3	Median	1.2859	1.129	NaN	1	0	Median	0.77978	0.95779	5.4792	2	0	Median	1.0297	1.0052	20.222	4	1	Median	0.92999	1.035	3.7628	3	2	Median	823910000	410530000	413380000	131960000	60662000	71297000	114160000	58837000	55325000	289380000	137990000	151400000	288410000	153050000	135360000	18227	4017	17272	111193;111194;111195;111196;111197;111198;111199;111200;111201;111202	150036;150037;150038;150039;150040;150041;150042;150043;150044;150045	150041			10	
GEVPAMLPLK	1	Unmodified	1053.5893	0.5892525	9	A0PJW6	TMEM223	Transmembrane protein 223	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		63.958	63.337	2	4.2933E-05	57325	160511_QHF_FH_JSI10i_1	94.302	76.917			1.1008	1.0553	3.1501	3	0	Plateau	1.3487	1.1199	NaN	1	0	Median	0.92263	1.0674	NaN	1	0	Median	1.1008	1.0553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88429000	41394000	47034000	23818000	10150000	13668000	27372000	13111000	14261000	37239000	18133000	19106000	0	0	0	18228	9	17273	111203;111204;111205	150046;150047;150048;150049;150050	150048			5	
GEVPCTVTSASPLEEATLSELK	1	Unmodified	2317.1359	0.13590772	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	86.759	86.309	2;3	1.0122E-17	78719	160511_QHF_FH_JSI11i_1	174.62	169.52			1.0837	1.0124	21.362	8	1	Median	1.3236	1.0708	3.0506	2	1	Median	0.82028	0.97548	0.37778	2	0	Median	0.8361	0.8257	13.68	2	0	Median	1.3718	1.4064	4.3416	2	0	Median	473330000	238180000	235150000	56913000	27789000	29123000	107420000	57753000	49671000	179110000	99759000	79350000	129880000	52881000	77004000	18229	1612	17274	111206;111207;111208;111209;111210;111211;111212;111213	150051;150052;150053;150054;150055;150056;150057;150058;150059;150060;150061;150062;150063;150064;150065;150066	150055			16	
GEVQVSDK	1	Unmodified	860.42396	0.42396131	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3					3	2	4	10.136	5.5085	2	7.8104E-06	6423	160511_QHF_FH_JSI12i_1	122.52	49.256			0.88081	0.93878	12.317	8	2	Median	NaN	NaN	NaN	0	0	Median	0.63657	0.75587	19.01	3	0	Plateau	0.87071	0.84267	6.5105	2	0	Median	0.89331	0.94552	5.2827	3	2	Median	1551200000	884120000	667110000	0	0	0	460060000	325890000	134170000	536530000	262920000	273610000	554640000	295310000	259330000	18230	5569	17275	111214;111215;111216;111217;111218;111219;111220;111221;111222	150067;150068;150069;150070;150071;150072;150073;150074	150068			8	
GEVSARQELK	1	Unmodified	1115.5935	0.59348625	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	10.307	10.355	3	0.00099131	7999	160511_QHF_FH_JSI11i_3	50.353	22.149			0.66369	0.64893	68.866	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41757	0.39877	NaN	1	0	Median	1.0549	1.056	NaN	1	0	Median	171770000	113840000	57931000	0	0	0	0	0	0	81452000	65568000	15884000	90318000	48271000	42048000	18231	1033	17276	111223;111224	150075;150076	150075			2	
GEVTEMFSYEESNPK	1	Unmodified	1745.7454	0.74543138	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								2	3	4	3	57.815	57.105	2;3	3.034E-65	51985	160511_QHF_FH_JSI12i_1	280.56	257.53			0.92747	0.94299	23.254	11	2	Median	1.3978	1.193	28.776	2	1	Median	0.71729	0.83474	14.274	3	0	Median	0.95284	0.94299	13.141	3	1	Median	0.8456	0.88735	31.043	3	0	Median	804370000	431440000	372930000	149780000	60502000	89282000	244450000	146160000	98294000	207850000	107140000	100710000	202280000	117640000	84637000	18232	3712	17277	111225;111226;111227;111228;111229;111230;111231;111232;111233;111234;111235;111236	150077;150078;150079;150080;150081;150082;150083;150084;150085;150086;150087;150088;150089;150090;150091;150092;150093;150094;150095;150096	150085			18	
GEVTEMFSYEESNPKDPAAVTESK	2	Unmodified	2644.185	0.18504276	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	63.354	62.527	3	2.0404E-17	53600	160511_QHF_FH_JSI12i_2	133.26	124.17			0.87956	0.95508	38.483	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87956	0.95508	38.483	2	1	Median	68994000	26635000	42358000	0	0	0	0	0	0	17119000	0	17119000	51874000	26635000	25239000	18233	3712	17278	111237;111238;111239;111240	150097;150098;150099;150100;150101	150097			5	
GEVTFEDVK	1	Unmodified	1022.492	0.49204087	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.086	35.479	2	5.8068E-06	31129	160511_QHF_FH_JSI9i_1	129.42	89.153			1.1269	1.1734	6.7443	4	0	Median	1.4255	1.1862	NaN	1	0	Median	0.97633	1.1609	NaN	1	0	Median	1.0794	1.0606	NaN	1	0	Median	1.1765	1.2461	NaN	1	0	Median	819880000	394010000	425870000	142690000	76324000	66366000	227620000	120070000	107560000	243630000	108180000	135460000	205930000	89442000	116490000	18234	5345	17279	111241;111242;111243;111244	150102;150103;150104;150105;150106	150105			5	
GEVVDAVVTQVNK	1	Unmodified	1356.7249	0.72489436	2008	P62487	POLR2G	DNA-directed RNA polymerase II subunit RPB7	yes	yes	0	0	0	0		By MS/MS			13	0						1					1			60.81	51.367	2	0.0017712	26403	160513_QHF_FH_JSI10Kac_3	80.763	68.187			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18235	2008	17280	111245	150107	150107			1	
GEVVEGDPDK	1	Unmodified	1043.4771	0.47711909	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	3	2	2	14.42	10.63	2	7.0163E-08	9706	160511_QHF_FH_JSI12i_1	123.86	108.2			0.94403	0.90941	24.116	8	2	Median	0.99338	0.82701	NaN	1	0	Median	0.76142	0.88178	40.696	3	2	Median	0.96416	0.91988	17.512	2	0	Median	0.95162	1.0126	10.842	2	0	Median	689430000	352380000	337050000	163880000	74338000	89540000	166060000	91719000	74343000	192820000	103750000	89076000	166670000	82580000	84091000	18236	346	17281	111246;111247;111248;111249;111250;111251;111252;111253	150108;150109;150110;150111;150112;150113;150114;150115;150116;150117;150118;150119	150112			12	
GEVVTVR	0	Unmodified	758.42865	0.42865276	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				14.623	13.906	2	0.033424	11288	160511_QHF_FH_JSI9i_2	50.632	3.9683			1.5571	1.2805	NaN	1	0	Median	1.5571	1.2805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1165500000	546660000	618840000	1165500000	546660000	618840000	0	0	0	0	0	0	0	0	0	18237	4700	17282	111254	150120	150120			1	
GEVYKAQIMNVSWSADHR	1	Acetyl (K)	2132.0109	0.010922397	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	75.677	67.037	3	3.4632E-56	35048	160513_QHF_FH_JSI12Kac_6	191.97	178.55			0.62855	0.97632	21.902	3	0	Plateau	1.1341	0.97632	NaN	1	0	Median	0.61552	0.71113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0377	1.0827	NaN	1	0	Median	142330000	80075000	62259000	30371000	15165000	15206000	53974000	33411000	20563000	21574000	10916000	10658000	36416000	20583000	15832000	18238	991	17283	111255;111256;111257;111258;111259	150121;150122;150123;150124;150125;150126;150127	150126	786		7	
GEVYPFGIVGMANK	1	Unmodified	1480.7384	0.73843593	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.624	5	6	1							3	3	4	2	80.765	80.252	2;3	1.2159E-12	70876	160511_QHF_FH_JSI9i_2	117.02	91.401			0.81535	0.88297	10.368	9	6	Median	NaN	NaN	NaN	0	0	Median	0.69472	0.88297	10.498	3	2	Plateau	0.86432	0.84572	10.236	4	3	Median	0.87002	0.92792	15.052	2	1	Median	411080000	225970000	185110000	0	0	0	181620000	107470000	74151000	143090000	72811000	70276000	86374000	45691000	40683000	18239	543	17284	111260;111261;111262;111263;111264;111265;111266;111267;111268;111269;111270;111271	150128;150129;150130;150131;150132;150133;150134;150135;150136;150137;150138;150139;150140;150141;150142	150138			15	
GEWFLLGSPGS	0	Unmodified	1148.5502	0.55022446	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		96.82	96.697	2	0.045988	87826	160511_QHF_FH_JSI11i_1	36.557	27.612			1.0316	1.0506	5.4641	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94007	1.0107	NaN	1	0	Median	1.1321	1.0919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16336000	7211700	9124400	0	0	0	10129000	4175300	5953900	6206900	3036400	3170500	0	0	0	18240	4258	17285	111272;111273	150143	150143			1	
GEWIKPGAIVIDCGINYVPDDK	2	Unmodified	2458.2202	0.22024647	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	86.767	86.701	3	4.7357E-10	77388	160511_QHF_FH_JSI11i_3	111.13	97.118			1.0919	1.0712	26.046	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94178	0.89105	NaN	1	1	Median	1.266	1.2879	NaN	1	0	Median	76802000	33945000	42857000	0	0	0	0	0	0	25797000	13425000	12372000	51005000	20521000	30485000	18241	1004	17286	111274;111275	150144;150145	150144			2	
GEYDASK	1	Unmodified	768.329	0.32899829	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5	5.66	2					1					1	2		5.2344	2.6794	2	0.015056	2900	160511_QHF_FH_JSI10i_1	65.252	32.782			0.86484	0.9475	24.69	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77875	0.93826	NaN	1	0	Median	1.2159	1.1991	28.602	2	0	Median	NaN	NaN	NaN	0	0	Median	502520000	261400000	241120000	0	0	0	269070000	146870000	122190000	233450000	114520000	118930000	0	0	0	18242	366	17287	111276;111277;111278	150146;150147;150148	150148			3	
GEYDMTVPK	1	Unmodified	1038.4692	0.46919694	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	38.407	33.92	2	0.00023016	30197	160511_QHF_FH_JSI11i_1	99.802	18.254			1.3031	1.3257	11.316	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2773	1.2237	NaN	1	1	Median	1.3294	1.4361	NaN	1	1	Median	311700000	143200000	168490000	0	0	0	0	0	0	309950000	142540000	167410000	1749300	664210	1085100	18243	2286	17288	111279;111280;111281	150149;150150;150151	150149			3	
GEYDVTMPK	1	Unmodified	1038.4692	0.46919694	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				1	2	4	2	39.731	35.382	2	4.2032E-06	31716	160511_QHF_FH_JSI10i_1	120.15	40.681			1.0852	1.0154	23.254	9	1	Median	1.1777	0.95432	NaN	1	0	Median	0.83967	0.9645	3.1144	2	0	Median	1.0654	1.0238	9.3778	4	1	Median	1.4451	1.5458	29.183	2	0	Median	1455000000	714200000	740840000	229020000	102680000	126330000	339570000	181470000	158100000	641930000	329060000	312860000	244530000	100990000	143540000	18244	2286	17289	111282;111283;111284;111285;111286;111287;111288;111289;111290	150152;150153;150154;150155;150156;150157;150158;150159;150160;150161;150162;150163;150164	150158			12	
GEYDVTMPK	1	Oxidation (M)	1054.4641	0.46411156	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	26.205	18.971	2	0.024232	11376	160513_QHF_FH_JSI12Kac_3	69.423	8.8337			0.98962	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98962	1.0863	NaN	1	0	Median	2442300	1115000	1327300	0	0	0	0	0	0	0	0	0	2442300	1115000	1327300	18245	2286	17289	111291	150165	150165			0	
GEYDVTVPK	1	Unmodified	1006.4971	0.49712625	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	34.568	33.963	2	1.4006E-05	30756	160511_QHF_FH_JSI12i_1	109.71	88.414			0.90372	0.99807	26.246	4	1	Median	0.76949	0.6374	NaN	1	1	Median	0.89824	1.0503	NaN	1	0	Median	1.1791	1.1599	NaN	1	0	Median	0.90923	0.94843	NaN	1	0	Median	532310000	270120000	262180000	88557000	47752000	40804000	140390000	68919000	71469000	137600000	70263000	67334000	165760000	83187000	82578000	18246	2286	17290	111292;111293;111294;111295;111296	150166;150167;150168;150169;150170;150171;150172	150168			7	
GEYNVYSTFQSHEPEFDYLK	1	Unmodified	2452.0859	0.085921059	2052;3018	P63151;Q00005;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.665	80.889	3	3.4579E-11	69830	160511_QHF_FH_JSI12i_2	121.63	114.01			1.2948	1.4222	108.11	4	3	Median	0.21225	0.17756	NaN	1	0	Median	1.3759	1.7117	NaN	1	1	Median	1.2185	1.233	NaN	1	1	Median	1.499	1.6403	NaN	1	1	Median	734180000	376580000	357600000	62495000	52186000	10309000	214510000	107580000	106930000	266350000	146330000	120020000	190830000	70480000	120350000	18247	2052;3018	17291	111297;111298;111299;111300	150173;150174;150175;150176	150173			4	
GEYPSGINTWQFNFK	1	Unmodified	1786.8315	0.83148469	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	83.946	82.852	2	1.5616E-07	73178	160511_QHF_FH_JSI9i_2	93.258	79.449			0.54249	0.58968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54249	0.58968	NaN	1	1	Median	12504000	5494700	7009400	0	0	0	0	0	0	0	0	0	12504000	5494700	7009400	18248	5277	17292	111301;111302;111303	150177;150178;150179	150178			3	
GEYQGVFHCAVETAK	1	Unmodified	1694.7723	0.77225526	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	43.287	43.194	2;3	2.6568E-21	36903	160511_QHF_FH_JSI12i_3	173.68	158.7			1.1785	1.1561	26.736	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95085	0.90969	3.5546	2	0	Median	1.4609	1.4433	1.0327	2	0	Median	475020000	213710000	261300000	0	0	0	0	0	0	214160000	107210000	106960000	260850000	106510000	154350000	18249	5262	17293	111304;111305;111306;111307;111308	150180;150181;150182;150183;150184;150185;150186;150187	150186			8	
GEYTLVVK	1	Unmodified	907.50148	0.50148335	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.12	5		1			1	3			3	2	2	3	42.057	37.189	2	1.2317E-06	33204	160511_QHF_FH_JSI10i_1	149.4	116.04			1.0193	0.90598	12.657	9	2	Linear	1.3189	1.085	2.6102	2	2	Median	0.84294	0.99491	11.622	2	0	Median	0.98496	0.97766	5.4628	2	0	Median	0.90087	0.91171	19.928	3	0	Plateau	855270000	435420000	419860000	148740000	76275000	72468000	259200000	142910000	116290000	250800000	128810000	121990000	196530000	87419000	109110000	18250	1192	17294	111309;111310;111311;111312;111313;111314;111315;111316;111317;111318	150188;150189;150190;150191;150192;150193;150194;150195;150196;150197;150198;150199	150193			12	
GEYTMEYSR	0	Unmodified	1134.4652	0.4651742	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		24.858	24.059	2	0.002	20710	160511_QHF_FH_JSI9i_1	68.016	64.157			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18251	4221	17295	111319;111320	150200;150201	150200			2	
GEYWAEHPTIK	1	Unmodified	1329.6354	0.63535107	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		46.893	37.728	3	0.00027908	20831	160513_QHF_FH_JSI10Kac_6	65.563	51.001			0.72438	0.86368	22.672	3	0	Plateau	1.0504	0.91567	NaN	1	0	Median	0.72438	0.86368	NaN	1	0	Median	1.3262	1.3127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34956000	18089000	16866000	9403600	3210600	6193000	17605000	11425000	6180200	7947400	3454300	4493100	0	0	0	18252	2884	17296	111321;111322;111323	150202;150203;150204	150204			3	
GFAAFLTELAER	0	Unmodified	1323.6823	0.68230126	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	1	2		94.477	90.647	2	9.1415E-05	46974	160513_QHF_FH_JSI10Kac_6	99.522	73.008			0.66555	0.65683	29.67	4	4	Median	0.86717	0.73277	NaN	1	1	Median	0.50854	0.58876	NaN	1	1	Median	0.73943	0.70044	48.583	2	2	Median	NaN	NaN	NaN	0	0	Median	131030000	81645000	49386000	11166000	6187800	4978500	60847000	41353000	19494000	59017000	34104000	24913000	0	0	0	18253	2605	17297	111324;111325;111326;111327	150205;150206;150207;150208	150208			4	
GFAAQFIK	1	Unmodified	880.48069	0.48068833	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.092	50.244	2	2.5976E-05	42078	160511_QHF_FH_JSI10i_3	138.62	119.14			0.99267	0.96541	10.703	4	0	Median	1.128	0.90734	NaN	1	0	Median	0.95514	1.1048	NaN	1	0	Median	0.95089	0.87849	NaN	1	0	Median	1.0317	1.0272	NaN	1	0	Median	366140000	188390000	177750000	54519000	22757000	31762000	65757000	34388000	31369000	90167000	46061000	44106000	155690000	85182000	70511000	18254	21	17298	111328;111329;111330;111331	150209;150210;150211;150212;150213;150214	150210			6	
GFAAQFIKQK	2	Acetyl (K)	1178.6448	0.64479354	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.86	55.194	2	0.026713	29915	160513_QHF_FH_JSI11Kac_6	66.692	48.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18255	21	17299	111332	150215	150215	2		1	
GFAFIQLSTIVEAAQLLQILQALHPPLTIDGK	1	Unmodified	3444.9385	0.93846295	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.48	98.757	4	4.0482E-11	58468	160513_QHF_FH_JSI10Kac_6	100.86	93.856			0.60006	0.71409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60006	0.71409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72806000	50794000	22012000	0	0	0	72806000	50794000	22012000	0	0	0	0	0	0	18256	2140	17300	111333	150216	150216			1	
GFAFISFHR	0	Unmodified	1080.5505	0.55049923	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	2	7	2	2	72.079	63.793	2;3	2.1491E-85	34695	160513_QHF_FH_JSI11Kac_6	249.38	222.78			1.0724	1.0619	38.384	13	5	Median	1.1807	1.0398	4.9387	2	0	Median	0.75714	0.89987	51.649	7	5	Median	1.1301	1.0813	2.564	2	0	Median	1.0586	1.101	1.3298	2	0	Median	30357000000	14149000000	16208000000	4372900000	1942200000	2430800000	18437000000	8730300000	9706400000	4666600000	2010500000	2656000000	2881000000	1466200000	1414700000	18257	570	17301	111334;111335;111336;111337;111338;111339;111340;111341;111342;111343;111344;111345;111346	150217;150218;150219;150220;150221;150222;150223;150224;150225;150226;150227;150228;150229;150230;150231;150232;150233;150234;150235;150236;150237	150220			21	
GFAFITFMFPEHAVK	1	Unmodified	1740.8698	0.86978446	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.538	84.19	3	3.1455E-25	47085	160513_QHF_FH_JSI11Kac_6	160.31	147.69			0.98769	0.93863	16.534	4	1	Median	1.1328	0.97985	NaN	1	0	Median	1.0364	1.2294	NaN	1	1	Median	0.94126	0.89915	NaN	1	0	Median	0.79096	0.84152	NaN	1	0	Median	711510000	364970000	346540000	115120000	46305000	68814000	218670000	113240000	105430000	244710000	125620000	119090000	133020000	79809000	53207000	18258	5621	17302	111347;111348;111349;111350	150238;150239;150240	150238			3	
GFAFITFMFPEHAVK	1	Oxidation (M)	1756.8647	0.86469908	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	87.982	78.54	3	0.00037531	42106	160513_QHF_FH_JSI12Kac_6	79.337	70.054			1.1928	1.2761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1928	1.2761	NaN	1	1	Median	95592000	36130000	59462000	0	0	0	0	0	0	0	0	0	95592000	36130000	59462000	18259	5621	17302	111351	150241	150241		2716	1	
GFAFVEFETK	1	Unmodified	1173.5706	0.57062555	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.712	75.079	2	0.00047528	65915	160511_QHF_FH_JSI11i_2	84.213	54.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18260	2831	17303	111352	150242	150242			1	
GFAFVEFSHLQDATR	0	Unmodified	1723.8318	0.83181904	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23			9						5	4	4	3	3	79.468	76.032	2;3	7.8284E-66	69999	160511_QHF_FH_JSI11i_3	178.68	168.62			0.96982	0.9562	20.874	13	1	Median	1.3933	1.1578	11.204	3	1	Plateau	0.81078	0.93386	13.584	4	0	Median	0.99627	0.93678	17.269	3	0	Median	0.84315	0.85524	30.255	3	0	Median	1296500000	668830000	627630000	225020000	95606000	129420000	419780000	235290000	184480000	391900000	190600000	201290000	259770000	147320000	112440000	18261	2140	17304	111353;111354;111355;111356;111357;111358;111359;111360;111361;111362;111363;111364;111365;111366	150243;150244;150245;150246;150247;150248;150249;150250;150251;150252;150253;150254;150255;150256;150257;150258;150259;150260;150261;150262;150263;150264	150244			21	
GFAFVEYESHR	0	Unmodified	1340.6149	0.61494998	4	A0AV96;Q8TBY0;Q9NQ94	RBM47;RBM46;A1CF	RNA-binding protein 47;Probable RNA-binding protein 46;APOBEC1 complementation factor	yes	no	0	0	0	0		By MS/MS			16	0									1		1			58.134	49.65	3	0.0086038	27352	160513_QHF_FH_JSI10Kac_6	45.661	36.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18262	4	17305	111367	150265	150265			1	
GFAFVQLSSAMDASQLLQILQSLHPPLK	1	Unmodified	3038.6263	0.62631329	1782	P52756	RBM5	RNA-binding protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			100.55	93.107	3;4	4.5469E-84	52859	160513_QHF_FH_JSI9Kac_6	203.33	184.93			0.62386	0.8776	16.295	4	0	Linear	1.0186	0.8776	9.4274	2	0	Median	0.73389	0.85652	26.491	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	450520000	279120000	171400000	117200000	60697000	56501000	333320000	218420000	114900000	0	0	0	0	0	0	18263	1782	17306	111368;111369;111370;111371	150266;150267;150268;150269;150270	150266			5	
GFAFVQYVNER	0	Unmodified	1328.6513	0.65133548	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.6	6.59		3	4					2	6	5	4	4	2	73.311	68.289	2;3	3.3304E-58	36432	160513_QHF_FH_JSI11Kac_6	223.08	204.3			1.1254	1.0809	15.18	15	4	Median	1.2706	1.0883	16.348	5	1	Median	0.90954	1.0389	22.28	4	3	Median	1.1548	1.1116	5.6507	4	0	Median	0.94952	0.98471	14.914	2	0	Median	14814000000	7452500000	7361100000	2899000000	1387800000	1511200000	8181700000	4262500000	3919200000	2157900000	1008700000	1149200000	1575100000	793550000	781510000	18264	882	17307	111372;111373;111374;111375;111376;111377;111378;111379;111380;111381;111382;111383;111384;111385;111386	150271;150272;150273;150274;150275;150276;150277;150278;150279;150280;150281;150282;150283;150284;150285;150286;150287;150288;150289;150290;150291	150275			20	
GFAFVTFDDHDSVDK	1	Unmodified	1698.7526	0.75256567	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.52	4	10	10					8	8	8	10	12	10	73.069	68.694	2;3	1.0007E-80	35201	160513_QHF_FH_JSI12Kac_6	253.79	219.91			0.89672	0.89058	15.276	36	6	Median	1.103	0.9494	10.431	7	1	Median	0.64858	0.77458	15.207	10	3	Median	0.9708	0.93532	10.136	10	2	Median	0.80367	0.85741	14.794	9	0	Median	11183000000	5736200000	5446300000	1043800000	474160000	569640000	1759000000	984080000	774950000	3779300000	1908700000	1870600000	4600400000	2369300000	2231100000	18265	936	17308	111387;111388;111389;111390;111391;111392;111393;111394;111395;111396;111397;111398;111399;111400;111401;111402;111403;111404;111405;111406;111407;111408;111409;111410;111411;111412;111413;111414;111415;111416;111417;111418;111419;111420;111421;111422;111423;111424;111425;111426	150292;150293;150294;150295;150296;150297;150298;150299;150300;150301;150302;150303;150304;150305;150306;150307;150308;150309;150310;150311;150312;150313;150314;150315;150316;150317;150318;150319;150320;150321;150322;150323;150324;150325;150326;150327;150328;150329;150330;150331;150332;150333;150334;150335;150336;150337;150338;150339;150340;150341;150342;150343;150344;150345;150346;150347;150348;150349;150350;150351;150352;150353;150354;150355;150356;150357;150358;150359;150360;150361;150362;150363;150364;150365;150366;150367;150368;150369;150370;150371;150372;150373;150374;150375;150376;150377;150378;150379;150380;150381;150382	150378			88	
GFAFVTFDDHDTVDK	1	Unmodified	1712.7682	0.76821573	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.72	6.35	1	7	4					2	4	2	4	7	5	73.143	69.699	2;3	2.5033E-21	60966	160511_QHF_FH_JSI12i_3	174.24	154.04			0.96986	1.0232	13.819	18	3	Median	1.3042	1.0965	1.7363	2	0	Median	0.84557	1.021	12.448	4	0	Median	0.99513	0.98895	17.519	7	2	Median	0.96524	1.0588	13.151	5	1	Median	1814200000	841220000	972950000	81438000	35760000	45677000	262090000	150400000	111690000	735800000	316920000	418880000	734850000	338150000	396700000	18266	1763	17309	111427;111428;111429;111430;111431;111432;111433;111434;111435;111436;111437;111438;111439;111440;111441;111442;111443;111444	150383;150384;150385;150386;150387;150388;150389;150390;150391;150392;150393;150394;150395;150396;150397;150398;150399;150400;150401	150397			18	
GFAFVTFESPADAK	1	Unmodified	1485.714	0.71399532	1474	P38159;Q96E39;O75526;Q8N7X1	RBMX;RBMXL1;RBMXL2;RBMXL3	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.72	4	5	5					5	6	6	5	6	8	81.812	77.285	2;3	6.1038E-40	69848	160511_QHF_FH_JSI12i_2	201.48	183.17			0.85481	0.8965	19.104	25	8	Median	1.0901	0.92144	6.789	6	1	Median	0.85188	1.002	6.4158	5	1	Median	0.85626	0.83683	19.881	6	2	Median	0.75699	0.8319	28.953	8	4	Median	3321700000	1720900000	1600700000	543130000	252920000	290200000	553980000	299980000	254000000	1425500000	729080000	696430000	799050000	438940000	360110000	18267	1474	17310	111445;111446;111447;111448;111449;111450;111451;111452;111453;111454;111455;111456;111457;111458;111459;111460;111461;111462;111463;111464;111465;111466;111467;111468;111469	150402;150403;150404;150405;150406;150407;150408;150409;150410;150411;150412;150413;150414;150415;150416;150417;150418;150419;150420;150421;150422;150423;150424;150425;150426;150427;150428;150429;150430;150431;150432;150433;150434;150435;150436;150437;150438;150439;150440;150441;150442;150443;150444;150445;150446;150447;150448;150449;150450	150407			48	
GFAFVYFENVDDAK	1	Unmodified	1620.746	0.74602373	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.35		4	6	1					6	4	4	5	4	88.589	84.767	2;3	1.6828E-132	44054	160513_QHF_FH_JSI10Kac_6	274.03	252.8			1.0522	1.0701	24.352	15	2	Median	1.0711	0.91516	10.476	3	1	Median	0.9953	1.1724	30.165	4	1	Median	1.1681	1.1055	17.685	4	0	Median	0.79217	0.85169	18.588	4	0	Median	3822500000	1871100000	1951400000	750160000	373450000	376720000	572430000	253570000	318860000	1365200000	664910000	700260000	1134700000	579140000	555590000	18268	2044	17311	111470;111471;111472;111473;111474;111475;111476;111477;111478;111479;111480;111481;111482;111483;111484;111485;111486	150451;150452;150453;150454;150455;150456;150457;150458;150459;150460;150461;150462;150463;150464;150465;150466;150467;150468;150469;150470;150471;150472;150473;150474;150475;150476;150477;150478;150479;150480;150481;150482;150483;150484;150485	150484			35	
GFAFVYFER	0	Unmodified	1134.5498	0.54983053	2447	Q13595	TRA2A	Transformer-2 protein homolog alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.68			2	1					4	2	1	3	1	81.3	75.579	2	3.4261E-11	38529	160513_QHF_FH_JSI12Kac_6	155.75	124.45			0.96943	0.93318	37.463	6	2	Median	1.6417	1.3594	68.73	2	1	Median	0.81158	0.95411	NaN	1	0	Median	1.0783	1.0251	16.431	2	1	Median	0.77883	0.81979	NaN	1	0	Median	3345700000	1594000000	1751700000	867770000	364140000	503630000	1099700000	530190000	569520000	909080000	444770000	464300000	469110000	254880000	214230000	18269	2447	17312	111487;111488;111489;111490;111491;111492;111493	150486;150487;150488;150489;150490;150491;150492;150493;150494;150495	150493			10	
GFAHGSVYK	1	Unmodified	964.47667	0.47666558	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			14.387	13.542	2	0.0031913	10792	160511_QHF_FH_JSI10i_3	71.501	46.607			0.89771	1.0485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89771	1.0485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25304000	13414000	11889000	0	0	0	25304000	13414000	11889000	0	0	0	0	0	0	18270	4816	17313	111494	150496	150496			1	
GFALLFYLEQLLGGPEIFLGFLK	1	Unmodified	2584.4345	0.43451999	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.64	6.21			5	1					5	3	2	3	3	106.56	101.33	3	2.8452E-18	59731	160513_QHF_FH_JSI10Kac_6	132.13	118.81			0.99759	1.0206	32.504	10	2	Median	0.80357	0.66421	30.494	3	2	Plateau	1.1115	1.2674	34.125	2	0	Median	0.83392	0.79435	38.929	2	0	Median	0.8183	0.85005	34.205	3	0	Plateau	1274500000	541020000	733510000	42484000	23326000	19158000	1087400000	434840000	652580000	105430000	63677000	41756000	39194000	19178000	20016000	18271	943	17314	111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505	150497;150498;150499;150500;150501;150502;150503;150504;150505;150506;150507;150508;150509;150510;150511;150512;150513;150514;150515;150516;150517;150518;150519	150518			23	
GFALLNFVVK	1	Unmodified	1106.6488	0.64881629	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	96.438	92.234	2	5.8306E-26	82020	160511_QHF_FH_JSI9i_3	194.27	173.75			1.0098	0.94887	21.2	8	3	Median	0.98575	0.81198	1.8341	2	0	Median	0.70379	0.81527	6.2711	2	1	Median	1.303	1.2397	22.278	2	1	Median	1.0291	1.0629	0.85566	2	1	Median	3831400000	1864500000	1966900000	1101100000	503430000	597670000	1069400000	599640000	469760000	769180000	315670000	453500000	891750000	445790000	445960000	18272	140	17315	111506;111507;111508;111509;111510;111511;111512;111513	150520;150521;150522;150523;150524;150525;150526;150527;150528	150524			9	
GFALLQK	1	Unmodified	775.45922	0.4592246	3572	Q8N954	GPATCH11	G patch domain-containing protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	48.235	48.115	2	0.014353	41181	160511_QHF_FH_JSI12i_3	66.994	50.067			0.47797	0.46303	47.682	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6998	0.64869	NaN	1	1	Median	0.32646	0.33051	NaN	1	1	Median	224650000	164400000	60254000	0	0	0	0	0	0	85927000	60624000	25303000	138720000	103770000	34951000	18273	3572	17316	111514;111515	150529;150530	150530			2	
GFALVGVGSEASSK	1	Unmodified	1307.6721	0.67213051	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.2	3	2	4				2	4		3	3	4	5	60.196	55.15	2	1.1282E-12	47255	160511_QHF_FH_JSI12i_3	117.98	70.778			0.79639	0.79634	33.103	14	8	Median	0.97642	0.82941	11.53	3	1	Median	0.77813	0.90403	28.345	3	2	Median	0.83464	0.83565	37.766	4	2	Median	0.61198	0.65448	51.053	4	3	Median	1628100000	1097800000	530320000	150200000	91250000	58945000	188810000	105230000	83570000	622360000	432980000	189380000	666790000	468360000	198430000	18274	2746	17317	111516;111517;111518;111519;111520;111521;111522;111523;111524;111525;111526;111527;111528;111529;111530	150531;150532;150533;150534;150535;150536;150537;150538;150539;150540;150541;150542;150543;150544;150545	150545			15	
GFALVGVGSEASSKK	2	Unmodified	1435.7671	0.76709352	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			46.561	44.975	3	0.00040847	37483	160511_QHF_FH_JSI10i_3	72.898	61.954			0.75097	0.71853	4.7146	2	2	Median	0.85759	0.69498	NaN	1	1	Median	0.6576	0.74289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79465000	40542000	38923000	38753000	19301000	19452000	40711000	21241000	19471000	0	0	0	0	0	0	18275	2746	17318	111531;111532	150546;150547	150546			2	
GFALYNAANLK	1	Unmodified	1180.6241	0.6240581	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	62.061	61.466	2	1.7443E-05	51594	160511_QHF_FH_JSI10i_3	104.44	77.322			1.1122	0.94325	14.549	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79932	0.94325	NaN	1	0	Median	0.97679	0.91306	NaN	1	0	Median	1.1235	1.1921	NaN	1	0	Median	147150000	70458000	76694000	0	0	0	26309000	15400000	10908000	50361000	24231000	26129000	70483000	30827000	39657000	18276	3832	17319	111533;111534;111535	150548;150549;150550	150549			3	
GFASQVEQLISMGANVHSK	1	Unmodified	2001.9942	0.9942097	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	91.507	91.146	3	3.2683E-08	79094	160511_QHF_FH_JSI12i_3	104.03	93.687			0.86556	0.75238	26.951	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86556	1.0016	NaN	1	0	Median	1.0073	0.93095	NaN	1	0	Median	0.60228	0.60806	NaN	1	0	Median	320340000	175380000	144960000	0	0	0	75499000	36263000	39236000	113440000	62247000	51193000	131400000	76868000	54534000	18277	4750	17320	111536;111537;111538	150551;150552	150552			2	
GFAVMALAYYNYEDLPK	1	Unmodified	1963.939	0.93898623	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	92.348	82.941	3	0.0031092	46648	160513_QHF_FH_JSI11Kac_6	63.128	52.312			0.22658	0.22591	51.519	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16718	0.15694	NaN	1	0	Median	0.30708	0.3252	NaN	1	0	Median	123720000	103610000	20109000	0	0	0	0	0	0	77023000	67327000	9695700	46701000	36288000	10413000	18278	3313	17321	111539;111540	150553	150553			0	
GFAYIEFSDK	1	Unmodified	1175.5499	0.5498901	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.37		2	1					7	4	4	4	2	4	71.237	64.479	2	8.9641E-07	34272	160513_QHF_FH_JSI9Kac_6	129.1	110.32			1.2936	1.287	16.636	9	4	Median	1.4876	1.288	16.351	3	2	Median	1.0845	1.287	13.913	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4717	1.6272	24.254	3	1	Plateau	326470000	136570000	189900000	62696000	19087000	43608000	132550000	60244000	72311000	0	0	0	131220000	57242000	73976000	18279	3315	17322	111541;111542;111543;111544;111545;111546;111547;111548;111549;111550;111551;111552;111553;111554	150554;150555;150556;150557;150558;150559;150560;150561;150562;150563;150564;150565;150566;150567;150568;150569	150566			14	
GFAYVQFEDVR	0	Unmodified	1329.6354	0.63535107	535	O75494;Q8WXF0	SRSF10;SRSF12	Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	77.794	68.621	2	0.0046645	37707	160513_QHF_FH_JSI11Kac_6	61.582	41.795			1.4474	1.3112	31.415	4	2	Median	1.5197	1.2978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4474	1.377	5.4829	2	1	Median	0.67237	0.7244	NaN	1	1	Median	248690000	97423000	151270000	101810000	33717000	68095000	0	0	0	123860000	51572000	72291000	23015000	12134000	10881000	18280	535	17323	111555;111556;111557;111558	150570;150571;150572;150573;150574;150575	150571			6	
GFAYVQFEDVRDAEDALHNLDRK	1	Unmodified	2707.299	0.29904215	535	O75494	SRSF10	Serine/arginine-rich splicing factor 10	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			82.257	76.664	5	0.04309	42357	160513_QHF_FH_JSI10Kac_6	22.123	14.93			1.1192	1.3299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.3299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99109000	35810000	63298000	0	0	0	99109000	35810000	63298000	0	0	0	0	0	0	18281	535	17324	111559	150576	150576			0	
GFCFITFK	1	Unmodified	1018.4946	0.49462383	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.06			4					3	4	3	3	3	2	80.878	74.752	2	2.6925E-07	39651	160513_QHF_FH_JSI11Kac_6	158.08	135.95			0.98785	1.0485	23.389	11	1	Median	0.96889	0.77853	6.0626	3	0	Median	0.94845	1.0596	7.0064	3	0	Plateau	0.95436	0.90322	31.342	3	1	Plateau	1.2341	1.2789	13.827	2	0	Median	4784300000	2517600000	2266800000	681370000	379540000	301830000	1167900000	653990000	513920000	1806100000	939410000	866720000	1128900000	544620000	584300000	18282	2488	17325	111560;111561;111562;111563;111564;111565;111566;111567;111568;111569;111570	150577;150578;150579;150580;150581;150582;150583;150584;150585;150586;150587;150588;150589;150590;150591;150592;150593	150583			17	
GFCFITFKEEEPVK	2	Unmodified	1729.8385	0.83854391	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1			By MS/MS	By MS/MS	7.33	6.13			2						1			2	1	75.453	70.794	2;3	7.0035E-17	63401	160511_QHF_FH_JSI12i_3	142.08	124.28			0.55147	0.53217	19.299	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55147	0.53217	19.299	2	1	Median	NaN	NaN	NaN	0	0	Median	60888000	38307000	22581000	0	0	0	0	0	0	60888000	38307000	22581000	0	0	0	18283	2488	17326	111571;111572;111573	150594;150595;150596	150596			2	
GFCFITFKEEEPVKK	3	Unmodified	1857.9335	0.93350692	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		64.688	63.562	3;4	0.0012643	53324	160511_QHF_FH_JSI10i_3	54.598	45.183			0.79753	0.81617	52.607	4	2	Median	1.7883	1.4476	NaN	1	1	Median	0.55667	0.62863	58.697	2	1	Median	0.76621	0.69969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160050000	88785000	71265000	36376000	10299000	26077000	70561000	45213000	25349000	53113000	33273000	19840000	0	0	0	18284	2488	17327	111574;111575;111576;111577	150597;150598;150599;150600	150597			4	
GFCFITYTDEEPVKK	2	Unmodified	1832.8655	0.86548694	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			66.672	65.845	3	0.0001788	58433	160511_QHF_FH_JSI10i_2	68.262	57.627			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18285	230	17328	111578	150601	150601			1	
GFCFLEYEDHK	1	Unmodified	1443.6129	0.61290107	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.61		7	4						3	1	3	5	5	63.194	60.694	2;3	1.1738E-10	53705	160511_QHF_FH_JSI10i_2	118.28	117.29			1.0209	1.1242	31.831	13	2	Median	1.0013	0.84582	NaN	1	0	Median	0.92102	1.1254	45.78	3	1	Median	1.0341	0.97812	30.231	5	1	Median	1.2565	1.3387	24.155	4	0	Median	1186100000	579640000	606490000	52930000	26802000	26128000	183430000	94692000	88740000	506860000	296540000	210320000	442920000	161610000	281310000	18286	423;326	17329	111579;111580;111581;111582;111583;111584;111585;111586;111587;111588;111589;111590;111591;111592	150602;150603;150604;150605;150606;150607;150608;150609;150610;150611;150612;150613;150614;150615;150616;150617;150618;150619	150612			17	
GFCFVSYLAHLVGDQDQFDSFLK	1	Unmodified	2692.2632	0.26317392	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	1	2	2	2	95.732	90.662	3	3.4413E-126	51336	160513_QHF_FH_JSI11Kac_6	249.28	241.44			0.83095	0.98237	35.803	7	2	Median	1.4092	1.1828	NaN	1	1	Median	0.77782	0.95489	4.0134	2	0	Median	0.90911	0.90008	20.886	2	0	Median	1.3084	1.4113	68.974	2	1	Median	1627600000	832580000	795070000	172090000	70631000	101460000	849070000	500830000	348250000	227190000	105530000	121660000	379290000	155590000	223700000	18287	4715	17330	111593;111594;111595;111596;111597;111598;111599	150620;150621;150622;150623;150624;150625;150626	150620			7	
GFCYVEFDEVDSLK	1	Unmodified	1706.7498	0.74978848	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	84.835	84.254	2	3.7262E-17	73999	160511_QHF_FH_JSI11i_2	134.13	109.75			1.4194	1.2377	17.569	5	0	Median	1.4961	1.2206	NaN	1	0	Median	1.0391	1.2377	NaN	1	0	Median	1.0998	1.0448	NaN	1	0	Median	1.4594	1.566	1.855	2	0	Median	226290000	108250000	118040000	16697000	8563900	8133200	60449000	30998000	29451000	62508000	36228000	26280000	86633000	32456000	54177000	18288	2619	17331	111600;111601;111602;111603;111604;111605;111606	150627;150628;150629;150630;150631;150632;150633;150634;150635;150636;150637;150638	150638			12	
GFDILGIK	1	Unmodified	861.496	0.49600404	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.881	75.031	2	0.0007303	65746	160511_QHF_FH_JSI11i_2	98.997	55.996			0.86352	0.9229	6.6171	4	0	Median	1.1271	0.95921	NaN	1	0	Median	0.68208	0.82377	NaN	1	0	Median	0.90587	0.93074	NaN	1	0	Median	0.82315	0.91514	NaN	1	0	Median	483090000	253430000	229670000	82159000	41526000	40633000	116600000	73709000	42887000	184930000	84444000	100490000	99408000	53747000	45661000	18289	1818	17332	111607;111608;111609;111610	150639;150640;150641;150642;150643;150644	150643			6	
GFDILGIKPVQR	1	Unmodified	1341.7769	0.77687035	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	70.064	69.252	2;3	9.4705E-07	56992	160511_QHF_FH_JSI9i_3	135.43	115.82			0.86177	0.89078	4.8654	8	0	Linear	1.0591	0.85167	1.8574	2	0	Median	0.72555	0.82552	3.8845	2	0	Median	0.92198	0.87889	5.73	2	0	Median	0.82586	0.79991	3.9941	2	0	Median	2142400000	1131000000	1011400000	721830000	343580000	378260000	478380000	275800000	202580000	747800000	406120000	341680000	194420000	105550000	88867000	18290	1818	17333	111611;111612;111613;111614;111615;111616;111617;111618	150645;150646;150647;150648;150649;150650;150651;150652;150653;150654;150655;150656;150657;150658;150659;150660	150657			16	
GFDLASFNPHGISTFIDNDDTVYLFVVNHPEFK	1	Unmodified	3754.7944	0.79437749	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	96.939	88.667	3;4;5	0	50146	160513_QHF_FH_JSI9Kac_6	368.39	350.95			0.74804	0.96901	31.462	4	0	Linear	0.9083	0.76139	NaN	1	0	Median	0.65976	0.77584	NaN	1	0	Median	1.2826	1.2103	NaN	1	0	Median	1.3219	1.4177	NaN	1	0	Median	2791200000	1497000000	1294200000	1023200000	511550000	511610000	1240300000	742530000	497730000	388780000	193170000	195610000	138990000	49790000	89202000	18291	2639	17334	111619;111620;111621;111622;111623;111624;111625	150661;150662;150663;150664;150665;150666;150667;150668	150664			5	
GFDPNQLSVATLLFEGDREK	1	Unmodified	2235.1172	0.11716161	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.18	101.11	3	1.0951E-26	90168	160511_QHF_FH_JSI11i_3	183.21	169.76			1.072	1.2054	14.235	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83227	1.0028	NaN	1	0	Median	1.1404	1.1331	23.292	2	0	Median	1.1538	1.2229	2.0375	2	0	Median	1819000000	806250000	1012700000	0	0	0	156460000	84434000	72021000	743050000	330540000	412500000	919500000	391280000	528220000	18292	93	17335	111626;111627;111628;111629;111630;111631	150669;150670;150671;150672;150673;150674;150675;150676	150669			8	
GFDPSSPVLHELTFQAMSYDLLPIENDVYK	1	Unmodified	3424.6537	0.65370983	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.258	91.537	3	0.0013791	53233	160513_QHF_FH_JSI10Kac_6	52.675	36.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62611000	62611000	0	0	0	0	62611000	62611000	0	0	0	0	0	0	0	18293	1962	17336	111632	150677	150677			1	
GFDQAPVVDEAGVILGMVTLGNMLSSLLAGK	1	Unmodified	3101.6141	0.61409363	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	106.42	98.834	3	1.4473E-92	59672	160513_QHF_FH_JSI10Kac_6	216.21	199.93			1.5456	1.758	84.066	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80718	0.9702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.9594	3.1855	NaN	1	1	Median	177400000	93305000	84093000	0	0	0	150450000	89237000	61209000	0	0	0	26951000	4068000	22883000	18294	957	17337	111633;111634	150678;150679;150680	150679			3	
GFDQDMANK	1	Unmodified	1024.4284	0.42839476	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	3	2	24.164	19.466	2	5.8217E-23	16667	160511_QHF_FH_JSI9i_1	187	172.22			1.0259	1.1291	30.136	9	2	Median	1.3845	1.1291	NaN	1	0	Median	0.90632	1.0545	11.905	3	1	Plateau	0.50636	0.49632	51.834	3	1	Plateau	1.0961	1.1888	7.0418	2	0	Median	2135600000	1086800000	1048900000	614000000	244750000	369250000	373150000	196920000	176230000	471080000	295780000	175300000	677410000	349310000	328100000	18295	2778	17338	111635;111636;111637;111638;111639;111640;111641;111642;111643	150681;150682;150683;150684;150685;150686;150687;150688;150689;150690;150691;150692;150693	150688			12	
GFDQDMANK	1	Oxidation (M)	1040.4233	0.42330938	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.84	8					5				2	3	4	4	11.437	8.4199	2	0.00013826	5307	160513_QHF_FH_JSI12Kac_3	99.802	86.765			0.96359	0.98119	47.131	13	4	Median	1.3947	1.1718	50.274	2	0	Median	0.81462	0.9494	61.998	3	2	Median	0.90539	0.86257	55.022	4	1	Median	1.0402	1.0916	46.918	4	1	Median	641460000	262900000	378560000	112740000	44597000	68146000	180450000	79113000	101340000	172330000	69340000	102990000	175930000	69850000	106090000	18296	2778	17338	111644;111645;111646;111647;111648;111649;111650;111651;111652;111653;111654;111655;111656	150694;150695;150696;150697;150698;150699;150700;150701;150702;150703	150702		2136	9	
GFDQQMSSMVIEHMASHGTR	0	Unmodified	2247.9823	0.98234116	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			4						1	1	3	1		67.525	65.138	3;4	1.5985E-08	53564	160511_QHF_FH_JSI9i_3	79.568	71.671			0.83611	0.96217	15.28	5	1	Median	1.3407	1.1064	NaN	1	0	Median	0.74563	0.83686	9.8921	3	1	Plateau	0.7951	0.75461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	331150000	183610000	147540000	68601000	28852000	39749000	136600000	77684000	58917000	125950000	77077000	48870000	0	0	0	18297	4879	17339	111657;111658;111659;111660;111661	150704;150705;150706;150707;150708;150709	150708			5	
GFDQTINLILDESHER	0	Unmodified	1885.917	0.91700524	725	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							2	3	3	4	86.177	85.667	2;3	1.0024E-21	76101	160511_QHF_FH_JSI10i_2	135.58	113.54			1.0012	0.97509	14.495	10	1	Median	1.0686	0.89834	3.8606	2	0	Median	0.71878	0.90525	NaN	1	0	Median	0.97408	0.96411	3.246	3	1	Plateau	1.0531	1.1127	16.449	4	0	Median	693880000	339570000	354310000	74016000	33582000	40434000	96151000	58242000	37909000	239240000	117140000	122110000	284470000	130610000	153860000	18298	725	17340	111662;111663;111664;111665;111666;111667;111668;111669;111670;111671;111672;111673	150710;150711;150712;150713;150714;150715;150716;150717;150718;150719;150720;150721;150722;150723;150724;150725;150726;150727	150721			17	
GFDTSSSSSNSAASSSFK	1	Unmodified	1752.7439	0.74385148	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	2	3	1	33.829	29.562	2	1.5521E-137	26618	160511_QHF_FH_JSI12i_1	287.04	278.24			0.87234	0.87397	26.881	7	1	Median	1.0692	0.87397	NaN	1	0	Median	0.76696	0.90124	18.738	2	0	Median	1.4339	1.3923	30.913	3	1	Median	0.73733	0.76965	NaN	1	0	Median	521020000	266820000	254200000	127800000	63222000	64582000	124720000	70618000	54103000	120680000	65542000	55140000	147810000	67439000	80372000	18299	1684	17341	111674;111675;111676;111677;111678;111679;111680	150728;150729;150730;150731;150732;150733;150734;150735;150736;150737;150738;150739;150740	150731			13	
GFDVFNALDLMENK	1	Unmodified	1611.7603	0.76029359	1351	P30419;O60551	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	101.89	101.77	2;3	1.2296E-116	89677	160511_QHF_FH_JSI9i_2	270.56	254.69			0.99715	1.1132	8.6939	7	0	Median	1.4401	1.2242	NaN	1	0	Median	0.82922	1.0184	1.24	2	0	Median	1.0754	1.0817	10.54	2	0	Median	1.0407	1.1639	6.3054	2	0	Median	1386400000	705160000	681230000	202270000	89189000	113080000	338660000	192860000	145810000	474590000	236030000	238560000	370870000	187090000	183780000	18300	1351	17342	111681;111682;111683;111684;111685;111686;111687	150741;150742;150743;150744;150745;150746;150747	150743			7	
GFDWPLLVK	1	Unmodified	1073.591	0.59096706	896	P08236	GUSB	Beta-glucuronidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.483	94.086	2	0.00083343	82542	160511_QHF_FH_JSI11i_2	73.26	58.591			0.84139	0.77856	27.174	4	0	Median	1.0689	0.8997	NaN	1	0	Median	0.57099	0.67286	NaN	1	0	Median	0.66228	0.67373	NaN	1	0	Median	1.1194	1.1863	NaN	1	0	Median	58260000	32193000	26068000	8679300	4384400	4295000	16225000	9354100	6871200	20257000	11830000	8427400	13098000	6624300	6474000	18301	896	17343	111688;111689;111690;111691	150748;150749;150750;150751;150752	150750			5	
GFDYLLK	1	Unmodified	854.4538	0.45380487	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.109	59.786	2	0.013281	51255	160511_QHF_FH_JSI12i_2	70.912	27.912			1.4829	1.6846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4829	1.6846	NaN	1	1	Median	34927000	15601000	19326000	0	0	0	0	0	0	0	0	0	34927000	15601000	19326000	18302	129	17344	111692	150753	150753			1	
GFEDDRIEALLHK	1	Unmodified	1541.7838	0.78380622	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	64.135	63.99	3;4	5.0282E-05	56804	160511_QHF_FH_JSI11i_3	88.561	73.017			1.2304	1.1867	26.846	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5186	1.4001	34.661	2	1	Median	1.1116	1.1109	20.617	2	0	Median	264160000	120490000	143670000	0	0	0	0	0	0	154840000	62327000	92515000	109320000	58167000	51156000	18303	2900	17345	111693;111694;111695;111696	150754;150755;150756;150757;150758	150755			5	
GFEDEVK	1	Unmodified	822.37595	0.37594848	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.762	20.578	2	0.011599	17331	160511_QHF_FH_JSI9i_1	77.058	67.308			2.2711	1.879	NaN	1	1	Median	2.2711	1.879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	553600000	166540000	387060000	553600000	166540000	387060000	0	0	0	0	0	0	0	0	0	18304	3218	17346	111697	150759	150759			1	
GFEDEVKK	2	Unmodified	950.47091	0.4709115	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	17.033	16.413	2	0.00064734	13879	160511_QHF_FH_JSI10i_2	131.06	108.93			1.3293	1.5659	55.091	6	5	Median	2.6122	2.2247	NaN	1	1	Median	1.0844	1.3391	73.103	2	2	Median	1.2253	1.2469	82.592	2	2	Median	0.96536	1.1022	NaN	1	0	Median	419700000	176660000	243040000	55229000	14675000	40555000	140710000	64289000	76418000	158420000	67073000	91348000	65344000	30627000	34717000	18305	3218	17347	111698;111699;111700;111701;111702;111703	150760;150761;150762;150763;150764;150765	150765			6	
GFEDEVKK	2	Acetyl (K)	992.48148	0.48147619	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		37.717	28.733	2	0.0094861	16707	160513_QHF_FH_JSI11Kac_3	82.452	55.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1377900	1377900	0	0	0	0	0	0	0	1377900	1377900	0	0	0	0	18306	3218	17347	111704	150766	150766	2801		1	
GFEEEHK	1	Unmodified	874.3821	0.38209649	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	6.1681	5.7622	2	0.0043209	3619	160511_QHF_FH_JSI11i_2	104.45	65.629			1.2166	1.4333	15.425	4	1	Linear	1.4364	1.2112	NaN	1	0	Median	0.76384	0.93427	NaN	1	1	Median	1.3406	1.3427	NaN	1	0	Median	1.104	1.2027	NaN	1	0	Median	222240000	96563000	125680000	39982000	15327000	24655000	38641000	21020000	17622000	105630000	43024000	62606000	37991000	17192000	20799000	18307	2412	17348	111705;111706;111707;111708	150767;150768;150769;150770;150771;150772	150770			6	
GFEEVIK	1	Unmodified	820.43307	0.43306943	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			2	3	3	1	40.232	37.3	2	0.0029888	31952	160511_QHF_FH_JSI11i_2	107.43	73.691			1.0882	1.173	19.099	9	1	Median	1.1543	0.9849	28.715	2	1	Median	1.0588	1.3062	16.369	3	0	Plateau	1.3286	1.3287	22.51	3	0	Plateau	1.0882	1.2075	NaN	1	0	Median	1166600000	486190000	680460000	219170000	82040000	137130000	382770000	155670000	227100000	423070000	172520000	250550000	141630000	75951000	65676000	18308	611	17349	111709;111710;111711;111712;111713;111714;111715;111716;111717	150773;150774;150775;150776;150777;150778;150779;150780;150781;150782	150780			10	
GFEKPTENSSAVLLQWHEK	2	Unmodified	2199.096	0.096032235	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		60.075	59.059	3;4	4.2089E-08	52204	160511_QHF_FH_JSI11i_3	106.75	84.738			0.90185	0.8801	17.112	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.76885	0.86997	21.728	2	1	Median	0.80481	0.76354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	258220000	142260000	115960000	0	0	0	177930000	99107000	78821000	80290000	43154000	37136000	0	0	0	18309	4338	17350	111718;111719;111720	150783;150784;150785;150786;150787	150784			5	
GFESPSDNSSAMLLQWHEK	1	Oxidation (M)	2177.9688	0.96878281	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	62.229	62.089	3	1.0713E-06	55112	160511_QHF_FH_JSI11i_3	96.487	92.049			0.88295	0.84325	18.446	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80985	0.74014	NaN	1	0	Median	0.96265	0.96074	NaN	1	0	Median	114690000	60903000	53792000	0	0	0	0	0	0	53144000	23711000	29434000	61550000	37192000	24358000	18310	296	17351	111721;111722	150788;150789;150790;150791	150788		116	4	
GFESPSDNSSAMLLQWHEK	1	Unmodified	2161.9739	0.97386819	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	2	3	4	72.169	68.711	2;3	7.6458E-35	36358	160513_QHF_FH_JSI11Kac_6	172.66	165.47			0.99763	0.97468	16.651	11	2	Median	1.2911	1.1019	13.707	2	0	Median	0.73002	0.87733	10.337	2	0	Median	0.99763	0.97254	3.4739	3	0	Median	1.0419	1.1185	20.626	4	2	Median	1521200000	787650000	733600000	175570000	77457000	98114000	279060000	155320000	123750000	488680000	259910000	228770000	577920000	294960000	282960000	18311	296	17351	111723;111724;111725;111726;111727;111728;111729;111730;111731;111732;111733	150792;150793;150794;150795;150796;150797;150798;150799;150800;150801;150802;150803;150804;150805;150806;150807;150808;150809;150810;150811;150812	150797			21	
GFETVSYLLEGGSMAHEDFCGHTGK	1	Unmodified	2728.1898	0.18975098	157	O00625	PIR	Pirin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.546	84.46	4	1.8988E-11	75377	160511_QHF_FH_JSI11i_3	93.767	92.998			1.0405	1.0144	26.529	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90605	0.84087	NaN	1	0	Median	1.195	1.2237	NaN	1	0	Median	139820000	65458000	74358000	0	0	0	0	0	0	73070000	40526000	32544000	66746000	24932000	41814000	18312	157	17352	111734;111735	150813;150814;150815;150816;150817	150813			5	
GFEVVYMTEPIDEYCVQQLK	1	Unmodified	2447.1389	0.13888461	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								1	4	3	3	98.668	98.548	2;3	3.232E-26	89160	160511_QHF_FH_JSI10i_1	206.18	62.757			0.82833	0.87072	28.035	10	4	Median	1.6322	1.3156	NaN	1	0	Median	0.72054	0.87072	11.683	4	4	Median	0.826	0.8071	10.623	3	0	Median	1.4573	1.4879	1.5778	2	0	Median	544440000	281020000	263420000	20317000	7237500	13079000	265550000	146550000	119000000	143880000	78568000	65313000	114690000	48661000	66034000	18313	898	17353	111736;111737;111738;111739;111740;111741;111742;111743;111744;111745;111746	150818;150819;150820;150821;150822;150823;150824;150825;150826;150827;150828;150829;150830;150831;150832;150833;150834;150835	150832			18	
GFFATLVDVVVQSLGDAFPELK	1	Unmodified	2351.2413	0.24129949	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	105.79	98.268	2;3	2.4201E-210	59263	160513_QHF_FH_JSI10Kac_6	386.99	354.06			0.90607	1.0682	14.881	4	0	Median	1.2288	1.0552	NaN	1	0	Median	0.90607	1.0817	0.039268	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75408	0.79737	NaN	1	0	Median	1717400000	920240000	797130000	24163000	13183000	10981000	1512100000	804330000	707780000	0	0	0	181090000	102720000	78371000	18314	1664	17354	111747;111748;111749;111750	150836;150837;150838;150839;150840;150841;150842;150843	150843			8	
GFFATLVDVVVQSLGDAFPELKK	2	Unmodified	2479.3363	0.33626251	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									8	3	4		1	104.14	97.254	2;3;4	6.4343E-212	58142	160513_QHF_FH_JSI10Kac_6	313.38	293.79			1.033	1.0081	14.109	6	2	Median	1.0895	0.9444	8.0027	2	0	Median	0.94564	1.1132	13.827	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1949800000	1065500000	884300000	367840000	182080000	185760000	1582000000	883430000	698540000	0	0	0	0	0	0	18315	1664	17355	111751;111752;111753;111754;111755;111756;111757;111758	150844;150845;150846;150847;150848;150849;150850;150851;150852;150853;150854	150850			11	
GFFDPNTEENLTYLQLK	1	Unmodified	2027.984	0.98402217	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.699	7	6	2							4	3	5	3	95.348	95.135	2;3	1.7313E-10	84274	160511_QHF_FH_JSI9i_1	138.75	125.33			1.1951	1.1859	15.612	14	11	Median	1.2729	1.055	14.263	4	4	Median	0.89497	1.035	10.372	3	1	Median	1.2455	1.2303	4.4773	4	4	Median	1.1081	1.1878	18.196	3	2	Plateau	847240000	426110000	421120000	194120000	92776000	101340000	327710000	186570000	141130000	222020000	103690000	118330000	103390000	43076000	60318000	18316	1085	17356	111759;111760;111761;111762;111763;111764;111765;111766;111767;111768;111769;111770;111771;111772;111773	150855;150856;150857;150858;150859;150860;150861;150862;150863;150864;150865;150866;150867;150868;150869;150870;150871;150872;150873;150874;150875	150867			21	
GFFDPNTHENLTYLQLLER	0	Unmodified	2306.1331	0.13314602	2636;1898	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	1	2	96.047	93.641	3	3.6596E-16	87395	160511_QHF_FH_JSI11i_3	150.45	138.48			1.3837	1.2665	8.9164	4	3	Linear	NaN	NaN	NaN	0	0	Median	1.1521	1.3315	NaN	1	1	Median	1.3471	1.2662	NaN	1	1	Median	1.1375	1.1721	10.999	2	1	Median	551670000	214290000	337380000	0	0	0	70742000	24046000	46696000	214080000	83310000	130770000	266850000	106930000	159910000	18317	2636;1898	17357	111774;111775;111776;111777	150876;150877;150878;150879	150876			4	
GFFDPNTHENLTYLQLLQR	0	Unmodified	2305.1491	0.14913044	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		95.899	95.495	3	3.9686E-08	79557	160511_QHF_FH_JSI10i_3	101.96	94.244			1.1048	1.1255	37.454	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3192	1.4668	NaN	1	0	Median	0.9253	0.86366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71026000	41196000	29830000	0	0	0	20278000	8453900	11824000	50749000	32742000	18006000	0	0	0	18318	1898	17358	111778;111779	150880;150881;150882	150882			3	
GFFDPNTHENLTYR	0	Unmodified	1709.7798	0.77978347	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	3	2	53.742	53.097	2;3	2.9408E-10	46834	160511_QHF_FH_JSI10i_2	120.53	116.42			1.2148	1.2407	11.373	10	3	Median	1.3819	1.208	18.06	2	1	Median	0.84503	1.0541	16.424	3	1	Median	1.3639	1.2555	2.2926	3	1	Plateau	1.1577	1.1724	9.9352	2	0	Median	1732900000	785000000	947930000	115580000	49742000	65838000	313250000	178010000	135250000	539860000	204730000	335130000	764230000	352520000	411710000	18319	2636	17359	111780;111781;111782;111783;111784;111785;111786;111787;111788;111789	150883;150884;150885;150886;150887;150888;150889;150890;150891;150892;150893;150894;150895	150891			13	
GFFDPNTHENLTYVQLLR	0	Unmodified	2163.0749	0.074902863	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	7						3	1	2	5	6	88.39	85.84	2;3	7.74E-25	41381	160513_QHF_FH_JSI9Kac_6	157.12	137.57			0.91587	0.91643	21.042	12	4	Median	1.0673	0.93171	NaN	1	0	Median	1.0633	1.293	7.0761	2	0	Median	1.0175	1.026	27.308	4	2	Median	0.83013	0.87979	10.369	5	2	Median	1072800000	559690000	513140000	76574000	39723000	36852000	137920000	66662000	71261000	374530000	179160000	195370000	483800000	274150000	209660000	18320	1898	17360	111790;111791;111792;111793;111794;111795;111796;111797;111798;111799;111800;111801;111802;111803	150896;150897;150898;150899;150900;150901;150902;150903;150904;150905;150906;150907;150908;150909;150910;150911;150912	150906			14	
GFFEGTIASK	1	Unmodified	1055.5288	0.52876073	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	50.224	49.355	2	2.9818E-14	43472	160511_QHF_FH_JSI10i_2	163.32	96.637			0.87206	0.99358	12.018	5	2	Median	1.141	0.99358	NaN	1	0	Median	0.86975	1.0486	4.1371	2	1	Median	0.88033	0.88599	NaN	1	0	Median	0.70785	0.79969	NaN	1	1	Median	1369400000	713790000	655610000	278310000	133440000	144870000	466920000	256030000	210890000	364440000	177230000	187210000	259730000	147100000	112640000	18321	1805	17361	111804;111805;111806;111807;111808	150913;150914;150915;150916;150917;150918	150918			6	
GFFELFPSLSHNLLVD	0	Unmodified	1833.9301	0.93013611	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.54	102.55	2	2.8691E-05	89333	160511_QHF_FH_JSI12i_3	102.62	78.634			1.0923	1.0881	12.592	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0414	0.99545	NaN	1	0	Median	1.1457	1.1895	NaN	1	0	Median	283670000	129240000	154430000	0	0	0	0	0	0	80808000	39499000	41310000	202860000	89740000	113120000	18322	5393	17362	111809;111810	150919;150920	150920			2	
GFFFSHVGWLLVR	0	Unmodified	1563.8351	0.83505393	166	O00767	SCD	Acyl-CoA desaturase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	2	3	2	91.214	82.751	2;3	2.847E-92	47818	160513_QHF_FH_JSI10Kac_6	280.37	261.62			0.98318	1.0191	38.083	10	2	Median	1.2955	1.1114	4.92	3	0	Median	0.85234	1.0163	0.71489	2	0	Median	0.89123	0.84624	64.735	3	1	Plateau	0.72501	0.76085	25.944	2	1	Median	6032300000	2988900000	3043400000	1863200000	787600000	1075600000	2438000000	1249000000	1189000000	1013900000	539790000	474150000	717210000	412470000	304730000	18323	166	17363	111811;111812;111813;111814;111815;111816;111817;111818;111819;111820	150921;150922;150923;150924;150925;150926;150927;150928;150929;150930;150931;150932;150933;150934;150935;150936;150937	150934			17	
GFFICDQPYEPVSPYSCK	1	Unmodified	2192.9547	0.95471265	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		81.333	80.713	2	0.00049219	70997	160511_QHF_FH_JSI11i_2	64.55	51.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18324	878	17364	111821	150938	150938			1	
GFFLFVEGGR	0	Unmodified	1127.5764	0.57637963	831	P05187;P10696	ALPP;ALPPL2	Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	yes	no	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	84.328	76.794	2	0.00085711	43314	160513_QHF_FH_JSI10Kac_6	88.948	59.475			1.1241	1.2704	34.539	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3721	1.6218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92089	0.9951	NaN	1	1	Median	96112000	45260000	50853000	0	0	0	71502000	30752000	40750000	0	0	0	24611000	14507000	10103000	18325	831	17365	111822;111823	150939;150940	150940			2	
GFFLITSCNWTK	1	Unmodified	1472.7122	0.71222118	2898	Q5JPI9	METTL10	Protein-lysine N-methyltransferase METTL10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	85.904	76.462	2	4.2647E-19	40812	160513_QHF_FH_JSI12Kac_6	155.06	139.79			0.83384	0.87088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83384	0.87088	NaN	1	0	Median	34104000	20520000	13584000	0	0	0	0	0	0	0	0	0	34104000	20520000	13584000	18326	2898	17366	111824;111825	150941;150942;150943	150942			3	
GFFLSAAGK	1	Unmodified	896.4756	0.47560295	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			53.314	51.744	2	7.9612E-05	43225	160511_QHF_FH_JSI10i_3	95.531	72.511			1.0894	1.0492	7.7904	2	0	Median	1.3697	1.1086	NaN	1	0	Median	0.86645	0.99296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170970000	86717000	84250000	96924000	43671000	53252000	74043000	43045000	30998000	0	0	0	0	0	0	18327	4404	17367	111826;111827	150944;150945;150946	150944			3	
GFFLVQTK	1	Unmodified	938.52255	0.52255314	559	O75695	RP2	Protein XRP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.82	6.42		1	4					2	4	3	3	2	3	63.81	59.301	2	1.0898E-06	32738	160513_QHF_FH_JSI10Kac_6	135.84	56.246			1.1053	1.0417	10.809	9	0	Median	1.3213	1.0944	6.9848	2	0	Median	0.85126	0.98274	2.3931	2	0	Median	1.1288	1.0574	9.9139	2	0	Median	1.1053	1.1274	18.16	3	0	Median	702280000	348510000	353770000	121700000	61511000	60187000	149830000	88858000	60969000	205920000	91458000	114460000	224840000	106680000	118160000	18328	559	17368	111828;111829;111830;111831;111832;111833;111834;111835;111836;111837;111838	150947;150948;150949;150950;150951;150952;150953;150954;150955;150956;150957;150958;150959	150959			13	
GFFNIYHPLDPVAYR	0	Unmodified	1807.9046	0.90459006	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	4	2	4	3	86.182	83.027	2;3	2.0182E-11	39504	160513_QHF_FH_JSI12Kac_6	109.08	99.549			1.1252	1.018	16.914	12	1	Median	1.2009	1.0076	10.862	4	0	Linear	0.8365	1.0003	4.637	2	1	Median	1.1457	1.0972	15.474	3	0	Plateau	1.0776	1.173	11.065	3	0	Plateau	1343600000	628290000	715260000	213320000	93844000	119480000	247790000	133660000	114130000	359160000	172730000	186430000	523280000	228050000	295230000	18329	5755	17369	111839;111840;111841;111842;111843;111844;111845;111846;111847;111848;111849;111850;111851	150960;150961;150962;150963;150964;150965;150966;150967;150968;150969;150970;150971;150972;150973;150974;150975;150976	150974			16	
GFFSFFQR	0	Unmodified	1034.4974	0.49740102	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			82.993	75.888	2	4.5453E-11	42659	160513_QHF_FH_JSI10Kac_6	157.99	129.88			1.2688	1.2783	26.281	2	0	Median	1.8055	1.5393	NaN	1	0	Median	0.89163	1.0615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87719000	43695000	44023000	21299000	9075300	12224000	66420000	34620000	31799000	0	0	0	0	0	0	18330	2862	17370	111852;111853	150977;150978	150978			1	
GFFSSLK	1	Unmodified	784.41194	0.41194006	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			47.846	46.259	2	0.0084038	37901	160511_QHF_FH_JSI9i_3	83.614	30.931			0.96983	0.92173	5.5107	2	1	Median	1.1016	0.8865	NaN	1	0	Median	0.85383	0.95835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	308300000	151860000	156440000	176090000	80527000	95559000	132210000	71332000	60879000	0	0	0	0	0	0	18331	5142	17371	111854;111855;111856	150979;150980;150981	150981			3	
GFFTQHAVQVFNSYIQCHLAAPDGTR	0	Unmodified	2963.4137	0.41369475	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.485	80.784	4	9.6916E-09	45401	160513_QHF_FH_JSI10Kac_6	85.595	76.214			0.88951	1.0687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88951	1.0687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	264170000	129030000	135150000	0	0	0	264170000	129030000	135150000	0	0	0	0	0	0	18332	4586	17372	111857	150982	150982			1	
GFGDGGGAPSWAPEDAWMGTHPK	1	Unmodified	2327.0066	0.006565301	3792	Q8WW01	TSEN15	tRNA-splicing endonuclease subunit Sen15	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.127	74.985	3	3.8563E-08	65028	160511_QHF_FH_JSI12i_3	76.417	74.846			1.6862	1.6178	14.745	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9409	1.7956	NaN	1	1	Median	1.4649	1.4576	NaN	1	0	Median	217700000	78780000	138920000	0	0	0	0	0	0	114330000	43759000	70569000	103370000	35021000	68348000	18333	3792	17373	111858;111859	150983;150984;150985	150984			3	
GFGDGYNGYGGGPGGGNFGGSPGYGGGR	0	Unmodified	2494.0323	0.03226278	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.852	6	5	8							4	5	5	5	57.816	57.104	2;3	0	50752	160511_QHF_FH_JSI11i_3	408.33	405.1			1.0647	1.0861	13.839	19	4	Median	1.397	1.1682	12.457	4	2	Median	0.98779	1.1594	8.6473	5	0	Median	1.1398	1.0861	12.663	5	0	Median	0.90372	0.92315	6.6006	5	2	Median	1316800000	636540000	680260000	243200000	115560000	127650000	359770000	179050000	180710000	477930000	230040000	247890000	235900000	111890000	124010000	18334	1212	17374	111860;111861;111862;111863;111864;111865;111866;111867;111868;111869;111870;111871;111872;111873;111874;111875;111876;111877;111878	150986;150987;150988;150989;150990;150991;150992;150993;150994;150995;150996;150997;150998;150999;151000;151001;151002;151003;151004;151005;151006;151007;151008;151009;151010;151011;151012;151013;151014;151015;151016;151017	150987			32	
GFGDVGEAK	1	Unmodified	878.4134	0.41339662	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	1	3	23.782	20.785	2	0.00046664	17800	160511_QHF_FH_JSI9i_1	80.165	44.285			0.85003	0.93096	42.48	7	0	Median	1.3165	1.0902	NaN	1	0	Median	0.7604	0.90309	4.2982	2	0	Median	1.152	1.1174	NaN	1	0	Median	0.85003	0.88829	67.546	3	0	Median	1465400000	687880000	777500000	323350000	128820000	194530000	255920000	132040000	123890000	373190000	185890000	187310000	512920000	241140000	271780000	18335	2505	17375	111879;111880;111881;111882;111883;111884;111885	151018;151019;151020;151021;151022;151023;151024	151023			6	
GFGFGGFAISAGK	1	Unmodified	1214.6084	0.60840804	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				80.985	79.643	2	1.8455E-05	65587	160511_QHF_FH_JSI9i_3	121.9	111.38			2.3105	1.914	NaN	1	0	Median	2.3105	1.914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23342000	9813200	13528000	23342000	9813200	13528000	0	0	0	0	0	0	0	0	0	18336	3377	17376	111886	151025;151026	151026			2	
GFGFGLVK	1	Unmodified	823.45922	0.4592246	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.81		5	9					1	4	5	5	5	4	66.588	63.545	1;2	0.00023404	52197	160511_QHF_FH_JSI9i_3	117.7	107.95			1.0262	0.99469	20.101	19	1	Median	1.2586	1.0831	14.954	5	0	Median	0.9187	1.0978	32.857	5	1	Median	1.0426	0.99983	8.1143	5	0	Median	0.85368	0.91096	11.731	4	0	Median	29120000000	13008000000	16112000000	6319100000	2619700000	3699400000	8671100000	4326600000	4344500000	5956300000	2535600000	3420700000	8173200000	3525600000	4647600000	18337	1570	17377	111887;111888;111889;111890;111891;111892;111893;111894;111895;111896;111897;111898;111899;111900;111901;111902;111903;111904;111905	151027;151028;151029;151030;151031;151032;151033;151034;151035;151036;151037;151038;151039;151040;151041;151042;151043;151044;151045;151046;151047;151048;151049;151050;151051;151052;151053;151054;151055;151056;151057;151058;151059;151060;151061	151042			33	
GFGFGQGAGALVHSE	0	Unmodified	1432.6735	0.67352749	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.97	4	6	7					2	4	5	6	7	5	66.829	63.815	2;3	2.7139E-208	53339	160511_QHF_FH_JSI10i_3	325.64	310.27			1.0315	1.0167	13.584	22	5	Median	1.2881	1.0921	17.359	5	0	Median	0.80947	0.96102	16.761	6	1	Median	1.0853	1.0293	12.271	7	4	Median	1.008	1.0341	7.8143	4	0	Median	9782500000	4841300000	4941200000	1085600000	454250000	631320000	1532200000	835440000	696780000	3557600000	1657500000	1900100000	3607100000	1894000000	1713000000	18338	1191	17378	111906;111907;111908;111909;111910;111911;111912;111913;111914;111915;111916;111917;111918;111919;111920;111921;111922;111923;111924;111925;111926;111927;111928	151062;151063;151064;151065;151066;151067;151068;151069;151070;151071;151072;151073;151074;151075;151076;151077;151078;151079;151080;151081;151082;151083;151084;151085;151086;151087;151088;151089;151090;151091;151092;151093;151094;151095;151096;151097;151098;151099;151100;151101;151102	151072			40	
GFGFILFK	1	Unmodified	927.52182	0.52182486	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.06		4	8	3	1		1	3	12	7	7	12	6	91.684	86.152	1;2	1.255E-07	43756	160513_QHF_FH_JSI11Kac_6	145.87	127.14			0.92297	0.92333	27.712	30	3	Median	1.1626	0.92667	20.494	7	1	Median	0.88987	0.98951	33.83	7	0	Median	0.87339	0.8584	28.573	10	2	Median	0.93769	0.96362	26.118	6	0	Median	48131000000	21280000000	26850000000	11944000000	4473000000	7471300000	12112000000	5882600000	6229200000	14527000000	6024500000	8502200000	9547800000	4900100000	4647800000	18339	4308	17379	111929;111930;111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960	151103;151104;151105;151106;151107;151108;151109;151110;151111;151112;151113;151114;151115;151116;151117;151118;151119;151120;151121;151122;151123;151124;151125;151126;151127;151128;151129;151130;151131;151132;151133;151134;151135;151136;151137;151138;151139;151140;151141;151142;151143;151144;151145;151146;151147;151148;151149;151150;151151;151152;151153;151154;151155;151156;151157;151158;151159;151160;151161;151162;151163;151164;151165;151166;151167;151168;151169;151170;151171;151172;151173	151123			71	
GFGFITFEDEQSVDQAVNMHFHDIMGK	1	Unmodified	3098.3902	0.3902417	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				92.538	83.68	4	0.011761	47013	160513_QHF_FH_JSI9Kac_6	45.511	42.469			0.94675	0.81991	NaN	1	1	Median	0.94675	0.81991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47064000	30623000	16441000	47064000	30623000	16441000	0	0	0	0	0	0	0	0	0	18340	4053	17380	111961	151174	151174			1	
GFGFITFTNPEHASVAMR	0	Unmodified	1980.9516	0.9516166	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.48		3	8						7	6	5	5	2	81.932	78.179	2;3	6.9645E-240	39376	160513_QHF_FH_JSI9Kac_6	397.25	358.1			0.94124	0.91534	16.189	17	1	Median	0.94761	0.7938	14.096	5	0	Median	0.83591	0.99318	10.317	5	0	Median	1.0031	0.94091	16.228	5	0	Median	0.8507	0.87852	15.73	2	1	Median	6754500000	3546300000	3208300000	1373000000	720130000	652910000	3011600000	1607200000	1404400000	1600500000	820130000	780380000	769380000	398840000	370540000	18341	2141	17381	111962;111963;111964;111965;111966;111967;111968;111969;111970;111971;111972;111973;111974;111975;111976;111977;111978;111979	151175;151176;151177;151178;151179;151180;151181;151182;151183;151184;151185;151186;151187;151188;151189;151190;151191;151192;151193;151194;151195;151196;151197;151198	151192			23	
GFGFITFTNPEHASVAMR	0	Oxidation (M)	1996.9465	0.94653123	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	3	3	2	1	77.704	71.005	2;3	7.7496E-129	38829	160513_QHF_FH_JSI10Kac_6	263.9	243.52			1.0605	1.0161	19.738	9	0	Median	1.1683	1.0049	17.735	3	0	Median	0.86103	1.0299	29.814	3	0	Median	1.1011	1.0651	6.6613	2	0	Median	0.71833	0.79458	NaN	1	0	Median	1616100000	832900000	783150000	657460000	308620000	348840000	641250000	366130000	275120000	306930000	152450000	154490000	10407000	5697700	4709700	18342	2141	17381	111980;111981;111982;111983;111984;111985;111986;111987;111988	151199;151200;151201;151202;151203;151204;151205;151206;151207;151208	151208		1788	10	
GFGFVCFSSPEEATK	1	Unmodified	1661.7396	0.73955814	1009;2385;4688	Q13310;P11940;Q4VXU2;Q9H361	PABPC4;PABPC1;PABPC1L;PABPC3	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.59	1	5	4					5	4	3	5	5	6	78.535	73.485	2	1.5068E-70	39783	160513_QHF_FH_JSI10Kac_6	260.6	194.01			1.1303	1.1759	78.825	18	8	Median	1.3141	1.1207	104.45	3	1	Median	0.95989	1.1395	72.886	5	1	Median	1.0022	0.9743	68.202	4	2	Median	1.3739	1.415	91.986	6	4	Median	3663700000	1232500000	2431100000	405100000	66736000	338360000	760510000	195250000	565250000	1098800000	451760000	647080000	1399200000	518790000	880430000	18343	2385;1009;4688	17382	111989;111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005;112006;112007	151209;151210;151211;151212;151213;151214;151215;151216;151217;151218;151219;151220;151221;151222;151223;151224;151225;151226;151227;151228;151229;151230;151231;151232;151233;151234;151235;151236;151237;151238;151239;151240;151241;151242	151242			34	
GFGFVDFLTK	1	Unmodified	1129.5808	0.5807963	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	99.205	99.097	2	3.2155E-05	85492	160511_QHF_FH_JSI12i_3	96.331	78.946			1.0143	0.9155	7.5267	4	1	Median	1.017	0.85765	NaN	1	0	Median	0.75768	0.89022	NaN	1	1	Median	1.0154	0.94151	NaN	1	0	Median	1.0132	1.0197	NaN	1	0	Median	87301000	42985000	44316000	10769000	5630900	5138300	9112400	5415000	3697400	15405000	6977500	8427400	52014000	24961000	27053000	18344	5621	17383	112008;112009;112010;112011	151243;151244;151245;151246	151246			4	
GFGFVDFNSEEDAK	1	Unmodified	1560.6733	0.67325272	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.23	5	6	6					3	1	7	5	5	4	73.89	71.127	2	1.5841E-136	63175	160511_QHF_FH_JSI11i_2	295.07	290.77			0.96231	0.99759	24.101	18	4	Plateau	1.0909	0.9539	9.5729	5	1	Median	0.85143	1.019	27.94	4	0	Median	1.0061	0.97246	22.818	5	2	Median	0.95483	1.0282	33.687	4	1	Linear	10806000000	5568600000	5237200000	1825800000	935290000	890520000	2833500000	1523800000	1309800000	3681600000	1876800000	1804800000	2464800000	1232700000	1232000000	18345	1154	17384	112012;112013;112014;112015;112016;112017;112018;112019;112020;112021;112022;112023;112024;112025;112026;112027;112028;112029;112030;112031;112032	151247;151248;151249;151250;151251;151252;151253;151254;151255;151256;151257;151258;151259;151260;151261;151262;151263;151264;151265;151266;151267;151268;151269;151270;151271;151272;151273;151274;151275;151276;151277;151278;151279;151280;151281;151282;151283;151284;151285;151286;151287;151288;151289;151290;151291;151292;151293;151294;151295;151296;151297;151298;151299;151300;151301;151302;151303;151304;151305;151306;151307;151308	151291			62	
GFGFVLFK	1	Unmodified	913.50617	0.5061748	2488;230	Q14103;O14979	HNRNPD;HNRNPDL	Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	5.68		4	12	1	3	3	2	5	28	11	9	26	12	87.692	81.534	1;2	1.255E-07	42506	160513_QHF_FH_JSI11Kac_6	145.87	125.59			0.89216	0.91332	77.222	40	10	Median	1.1109	0.97691	64.362	7	1	Median	0.8378	0.95644	20.436	8	1	Median	0.93429	0.89167	78.155	14	5	Median	0.78798	0.80131	102.26	11	3	Median	69610000000	31815000000	37795000000	18291000000	7585700000	10705000000	17349000000	7914900000	9434400000	20291000000	9524900000	10766000000	13680000000	6789500000	6890100000	18346	2488;230	17385	112033;112034;112035;112036;112037;112038;112039;112040;112041;112042;112043;112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063;112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075;112076;112077;112078;112079;112080;112081;112082;112083;112084;112085;112086;112087;112088;112089;112090	151309;151310;151311;151312;151313;151314;151315;151316;151317;151318;151319;151320;151321;151322;151323;151324;151325;151326;151327;151328;151329;151330;151331;151332;151333;151334;151335;151336;151337;151338;151339;151340;151341;151342;151343;151344;151345;151346;151347;151348;151349;151350;151351;151352;151353;151354;151355;151356;151357;151358;151359;151360;151361;151362;151363;151364;151365;151366;151367;151368;151369;151370;151371;151372;151373;151374;151375;151376;151377;151378;151379;151380;151381;151382;151383;151384;151385;151386;151387;151388;151389;151390;151391;151392;151393;151394;151395;151396;151397;151398;151399;151400;151401;151402;151403;151404;151405;151406;151407;151408;151409;151410;151411;151412	151334			104	
GFGFVQFK	1	Unmodified	928.48069	0.48068833	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	70.401	66.026	2	8.7805E-05	35631	160513_QHF_FH_JSI11Kac_6	126.24	79.58			1.0341	0.99337	31.126	7	2	Median	0.8827	0.73463	42.672	2	1	Median	0.47119	0.52726	NaN	1	1	Median	1.0378	0.98238	2.7549	2	0	Median	1.0053	1.045	3.4844	2	0	Median	896430000	461040000	435390000	245590000	132180000	113410000	135520000	90253000	45271000	268890000	123470000	145420000	246430000	115140000	131290000	18347	5058	17386	112091;112092;112093;112094;112095;112096;112097	151413;151414;151415;151416;151417;151418;151419	151415			7	
GFGFVSFER	0	Unmodified	1044.5029	0.50288033	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	71.918	67.98	2	9.0585E-33	37042	160513_QHF_FH_JSI10Kac_6	195.81	170.96			0.94865	0.91886	10.571	13	0	Median	1.271	1.0343	12.809	4	0	Median	0.74294	0.894	13.494	3	0	Median	0.97676	0.91886	3.7477	3	0	Median	0.85595	0.89607	9.5951	3	0	Median	6759000000	3445200000	3313800000	1742700000	720730000	1022000000	1936600000	1139800000	796830000	2315600000	1163200000	1152500000	763990000	421480000	342510000	18348	1009;4688	17387	112098;112099;112100;112101;112102;112103;112104;112105;112106;112107;112108;112109;112110	151420;151421;151422;151423;151424;151425;151426;151427;151428;151429;151430;151431;151432;151433;151434;151435;151436;151437;151438;151439;151440;151441;151442;151443;151444;151445;151446;151447;151448	151448			29	
GFGFVSFERHEDAQK	1	Unmodified	1752.822	0.82198264	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			58.154	49.35	3;4	0.00024306	27093	160513_QHF_FH_JSI10Kac_6	113.4	107.85			0.78049	0.77558	11.641	2	2	Median	0.83772	0.7143	NaN	1	1	Median	0.72716	0.84212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76111000	44246000	31864000	21051000	12915000	8136000	55060000	31331000	23728000	0	0	0	0	0	0	18349	1009;4688	17388	112111;112112	151449;151450	151450			2	
GFGFVSYEK	1	Unmodified	1032.4916	0.49164694	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.56	1	5	4					3	4	4	5	4	4	57.967	53.365	2	2.3495E-05	46865	160511_QHF_FH_JSI9i_2	117.04	97.4			1.0327	1.0038	14.623	17	5	Median	1.2377	1.0193	12.753	4	1	Median	0.87094	1.0266	14.196	5	1	Median	1.1559	1.1079	14.505	4	1	Median	0.90094	0.98184	20.599	4	2	Median	3841700000	1834800000	2006900000	411650000	190400000	221250000	686010000	376440000	309570000	1185600000	546250000	639300000	1558500000	721710000	836800000	18350	2385	17389	112113;112114;112115;112116;112117;112118;112119;112120;112121;112122;112123;112124;112125;112126;112127;112128;112129	151451;151452;151453;151454;151455;151456;151457;151458;151459;151460;151461;151462;151463;151464;151465;151466;151467;151468;151469;151470;151471;151472;151473	151464			23	
GFGFVSYEKHEDANK	2	Acetyl (K)	1768.8057	0.80566387	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.29	51.582	2	5.3898E-10	27981	160513_QHF_FH_JSI11Kac_6	165.7	147.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3710600	3710600	0	0	0	0	0	0	0	3710600	3710600	0	0	0	0	18351	2385	17390	112130	151474	151474	2456		1	
GFGFVTFADPASVDK	1	Unmodified	1556.7511	0.75110911	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.58		4	4					3		4	3	2	2	87.466	83.561	2	1.1374E-07	76019	160511_QHF_FH_JSI12i_3	134.13	123.61			0.48605	0.66734	31.311	9	5	Linear	0.65511	0.55756	38.421	3	3	Plateau	0.6459	0.76517	38.074	2	0	Median	0.83469	0.83609	50.946	2	1	Median	0.62321	0.65743	15.881	2	1	Median	522750000	322590000	200160000	100420000	58615000	41810000	129760000	90351000	39413000	132940000	77955000	54985000	159620000	95669000	63953000	18352	4028	17391	112131;112132;112133;112134;112135;112136;112137;112138;112139;112140;112141	151475;151476;151477;151478;151479;151480;151481;151482;151483;151484;151485;151486;151487;151488;151489;151490;151491	151491			17	
GFGFVTFDDHDPVDK	1	Unmodified	1694.7577	0.75765105	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.33	2	10	11					4	8	8	10	9	8	74.316	70.735	2;3	1.7538E-74	37136	160513_QHF_FH_JSI11Kac_6	257.13	239.92			0.9332	0.94451	17.717	33	6	Median	1.1245	0.92503	18.825	8	2	Median	0.81959	0.97416	17.406	9	1	Median	1.0424	1.0005	11.906	9	2	Median	0.78936	0.83433	21.205	7	1	Median	13320000000	6828300000	6492200000	1095800000	446360000	649440000	1665800000	873790000	792030000	4585700000	2260700000	2325100000	5973100000	3247500000	2725600000	18353	1212	17392	112142;112143;112144;112145;112146;112147;112148;112149;112150;112151;112152;112153;112154;112155;112156;112157;112158;112159;112160;112161;112162;112163;112164;112165;112166;112167;112168;112169;112170;112171;112172;112173;112174;112175;112176	151492;151493;151494;151495;151496;151497;151498;151499;151500;151501;151502;151503;151504;151505;151506;151507;151508;151509;151510;151511;151512;151513;151514;151515;151516;151517;151518;151519;151520;151521;151522;151523;151524;151525;151526;151527;151528;151529;151530;151531;151532;151533;151534;151535;151536;151537;151538;151539;151540;151541;151542;151543;151544;151545;151546;151547;151548;151549;151550;151551;151552;151553;151554;151555;151556;151557;151558;151559;151560;151561;151562;151563;151564;151565;151566;151567;151568;151569;151570;151571;151572;151573;151574;151575;151576;151577;151578;151579;151580;151581;151582;151583;151584	151522			93	
GFGFVTFDDHDPVDKIVLQK	2	Acetyl (K)	2318.1583	0.15829814	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		90.831	81.482	3	2.7937E-26	45658	160513_QHF_FH_JSI11Kac_6	159.04	146.92			0.3203	0.31241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3203	0.31241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94641000	67693000	26948000	0	0	0	0	0	0	94641000	67693000	26948000	0	0	0	18354	1212	17393	112177	151585;151586	151585	1089;1090		2	
GFGFVTFENEDVVEK	1	Unmodified	1715.8043	0.80426689	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	83.345	82.819	2	1.3961E-66	73909	160511_QHF_FH_JSI11i_3	239.02	204.33			0.20623	0.23683	87.971	6	4	Median	0.19177	0.16307	NaN	1	1	Median	0.18552	0.22655	NaN	1	1	Median	0.45729	0.44521	113.72	2	1	Median	0.50594	0.55125	113.2	2	1	Median	790190000	607350000	182840000	158590000	136030000	22564000	137440000	121930000	15508000	245360000	185890000	59472000	248790000	163500000	85294000	18355	4028	17394	112178;112179;112180;112181;112182;112183	151587;151588;151589;151590;151591;151592;151593;151594	151587			8	
GFGFVTFENIDDAK	1	Unmodified	1558.7304	0.73037367	2486	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	1	2	86.19	81.182	2	5.1296E-81	41765	160513_QHF_FH_JSI11Kac_6	234.65	215.9			0.93278	0.82543	14.996	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.62683	0.69468	NaN	1	1	Median	0.83083	0.80634	NaN	1	0	Median	0.88027	0.91912	11.895	2	1	Median	330110000	164020000	166090000	0	0	0	20579000	13092000	7487500	68729000	33624000	35104000	240810000	117300000	123500000	18356	2486	17395	112184;112185;112186;112187;112188	151595;151596;151597;151598;151599;151600;151601	151597			7	
GFGFVTFENSADADR	0	Unmodified	1631.7216	0.72159989	314	O43251;Q9NWB1	RBFOX2;RBFOX1	RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	7.33	6.13			2						1			2	1	75.124	71.922	2	3.4862E-117	65391	160511_QHF_FH_JSI11i_3	278.93	261.07			1.0524	0.99231	10.448	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0439	0.97358	2.6942	2	0	Median	1.152	1.1632	NaN	1	0	Median	156050000	76999000	79056000	0	0	0	0	0	0	100700000	51632000	49072000	55351000	25367000	29984000	18357	314	17396	112189;112190;112191	151602;151603;151604;151605;151606	151603			5	
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	Oxidation (M)	2842.3167	0.31668283	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	1.86				1					5	1	2	2	1	83.903	76.075	4	3.9906E-40	41013	160513_QHF_FH_JSI9Kac_6	150.06	143.26			0.9766	1.0437	15.42	6	0	Median	1.1796	1.0242	NaN	1	0	Median	0.9252	1.1015	4.9541	2	0	Median	1.1985	1.1631	22.998	2	0	Median	0.8111	0.86298	NaN	1	0	Median	912540000	436770000	475770000	283610000	132050000	151560000	451040000	219260000	231780000	76721000	35171000	41550000	101160000	50294000	50871000	18358	1212	17397	112192;112193;112194;112195;112196;112197	151607;151608;151609;151610;151611;151612;151613	151609		842;843	6	
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	Unmodified	2826.3218	0.3217682	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	1.75				1					6	2	1	3	1	88.305	79.797	3;4	1.27E-70	42430	160513_QHF_FH_JSI12Kac_6	198.55	184.87			1.1555	1.0327	20.224	7	0	Median	1.3018	1.1071	17.258	2	0	Median	0.86911	1.0327	NaN	1	0	Median	1.3993	1.3144	24.306	3	0	Median	0.81063	0.84822	NaN	1	0	Median	3365600000	1596800000	1768800000	811970000	350110000	461870000	1554800000	798730000	756070000	457820000	192920000	264900000	541010000	255080000	285930000	18359	1212	17397	112198;112199;112200;112201;112202;112203;112204	151614;151615;151616;151617;151618;151619;151620;151621	151620			8	
GFGFVTFSSMAEVDAAMAARPHSIDGR	0	2 Oxidation (M)	2858.3116	0.31159745	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	2	1	By MS/MS				16	0									1	1				79.758	71.125	4	6.7127E-05	38517	160513_QHF_FH_JSI9Kac_6	56.989	49.713			1.078	0.92568	NaN	1	0	Median	1.078	0.92568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87416000	28025000	59391000	87416000	28025000	59391000	0	0	0	0	0	0	0	0	0	18360	1212	17397	112205	151622	151622		842;843	0	
GFGFVTMTNYEEAAMAIASLNGYR	0	Unmodified	2612.2039	0.20394448	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		98.129	88.995	3	0.00013599	32566	160513_QHF_FH_JSI11Kac_1	64.295	56.762			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18361	2700	17398	112206	151623	151623			1	
GFGFVTYATVEEVDAAMNAR	0	Oxidation (M)	2162.9943	0.99426928	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	91.295	91.229	3	0.00014761	79110	160511_QHF_FH_JSI12i_3	58.427	55.092			2.2632	2.3373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2632	2.3373	NaN	1	1	Median	25358000	7361300	17997000	0	0	0	0	0	0	0	0	0	25358000	7361300	17997000	18362	936	17399	112207;112208;112209	151624;151625;151626	151626		510	3	
GFGFVTYATVEEVDAAMNAR	0	Unmodified	2146.9994	0.99935466	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2.33	0.471		2	1							1	1		1	101.53	101.49	3	9.242E-12	88220	160511_QHF_FH_JSI12i_3	136.35	117.59			0.88044	1.0789	21.52	3	0	Plateau	1.2413	1.0789	NaN	1	0	Median	1.1488	1.3892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88044	0.9054	NaN	1	0	Median	613410000	304680000	308730000	134000000	60266000	73733000	158040000	79206000	78835000	0	0	0	321370000	165210000	156160000	18363	936	17399	112210;112211;112212	151627	151627			1	
GFGFVTYATVEEVDAAMNARPHK	1	Oxidation (M)	2525.2009	0.20090801	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			10						8	5	5	5	3	79.948	75.279	3;4	1.809E-17	38169	160513_QHF_FH_JSI9Kac_6	128.05	125.25			1.013	0.98085	19.434	17	2	Median	1.013	0.87983	12.726	5	0	Median	0.81954	0.97318	19.024	5	1	Median	1.2991	1.231	8.6249	4	0	Median	0.95275	1.0224	15.734	3	1	Plateau	2051600000	1069000000	982590000	706750000	380280000	326470000	673430000	375170000	298260000	334620000	147410000	187210000	336800000	166160000	170640000	18364	936	17400	112213;112214;112215;112216;112217;112218;112219;112220;112221;112222;112223;112224;112225;112226;112227;112228;112229;112230	151628;151629;151630;151631;151632;151633;151634;151635;151636;151637;151638;151639;151640;151641;151642;151643;151644;151645;151646;151647;151648	151641		510	20	
GFGFVTYATVEEVDAAMNARPHK	1	Unmodified	2509.206	0.20599339	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.71		4	46						9	25	18	10	6	96.103	94.618	3;4	9.9804E-126	41470	160513_QHF_FH_JSI12Kac_6	245.88	220.67			0.88237	2.538	25.252	58	8	Linear	0.9203	0.73403	19.703	24	3	Median	0.67851	0.79066	14.595	18	1	Median	1.1974	1.1208	31.512	10	1	Median	0.86893	0.90771	29.982	6	3	Median	22376000000	11573000000	10803000000	6133700000	3101100000	3032500000	7874400000	4527200000	3347200000	6205700000	2766100000	3439600000	2162600000	1178500000	984090000	18365	936	17400	112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241;112242;112243;112244;112245;112246;112247;112248;112249;112250;112251;112252;112253;112254;112255;112256;112257;112258;112259;112260;112261;112262;112263;112264;112265;112266;112267;112268;112269;112270;112271;112272;112273;112274;112275;112276;112277;112278;112279;112280;112281;112282;112283;112284;112285;112286;112287;112288;112289	151649;151650;151651;151652;151653;151654;151655;151656;151657;151658;151659;151660;151661;151662;151663;151664;151665;151666;151667;151668;151669;151670;151671;151672;151673;151674;151675;151676;151677;151678;151679;151680;151681;151682;151683;151684;151685;151686;151687;151688;151689;151690;151691;151692;151693;151694;151695;151696;151697;151698;151699;151700;151701;151702;151703;151704;151705;151706;151707;151708;151709;151710;151711;151712;151713;151714;151715;151716;151717;151718;151719;151720;151721;151722;151723;151724;151725;151726;151727;151728;151729;151730;151731;151732;151733;151734;151735;151736;151737;151738;151739;151740;151741;151742;151743;151744	151736			93	
GFGFVTYATVEEVDAAMNARPHKVDGR	1	Acetyl (K)	2978.4345	0.43448978	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	87.681	79.523	4	3.1702E-48	45392	160513_QHF_FH_JSI10Kac_6	167.72	159.1			1.1824	1.3968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1824	1.3968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	364050000	268050000	96002000	0	0	0	167970000	71970000	96002000	167730000	167730000	0	28352000	28352000	0	18366	936	17401	112290;112291;112292	151745;151746;151747	151747	694		3	
GFGFVYFQNHDAADK	1	Unmodified	1714.774	0.77396981	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			8						10	5	5	5	3	68.686	63.75	2;3	3.3138E-74	34939	160513_QHF_FH_JSI10Kac_6	241.15	218.46			0.77298	0.80266	7.8779	17	6	Median	0.97159	0.81184	7.7877	4	0	Median	0.68776	0.80532	10.719	5	2	Median	0.81546	0.76763	8.4896	5	3	Median	0.77298	0.7984	2.3155	3	1	Plateau	12823000000	7321600000	5501700000	1839600000	781020000	1058600000	6534000000	4162600000	2371400000	3263200000	1693700000	1569500000	1186500000	684260000	502200000	18367	2361	17402	112293;112294;112295;112296;112297;112298;112299;112300;112301;112302;112303;112304;112305;112306;112307;112308;112309;112310	151748;151749;151750;151751;151752;151753;151754;151755;151756;151757;151758;151759;151760;151761;151762;151763;151764;151765;151766;151767;151768;151769;151770;151771;151772;151773;151774;151775;151776;151777;151778;151779;151780;151781	151778			34	
GFGGIGGILR	0	Unmodified	945.5396	0.53960019	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	3	1	1	67.128	65.199	2	5.4039E-14	53553	160511_QHF_FH_JSI9i_3	158.36	129.93			0.82832	0.84994	8.6375	6	1	Median	1.0436	0.8488	NaN	1	0	Median	0.75474	0.87712	13.181	3	1	Median	0.91733	0.85109	NaN	1	0	Median	0.80498	0.83414	NaN	1	0	Median	393720000	216390000	177330000	79770000	43083000	36688000	196280000	112670000	83613000	78332000	41670000	36662000	39331000	18964000	20368000	18368	2010	17403	112311;112312;112313;112314;112315;112316	151782;151783;151784;151785;151786;151787;151788	151785			7	
GFGGITHGPPEK	1	Unmodified	1195.5986	0.59857163	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	4	2	2	25.737	24.993	2;3	1.551E-31	20255	160511_QHF_FH_JSI9i_3	192.1	172.31			1.0058	1.0275	8.7974	11	0	Median	1.3419	1.0714	3.6003	3	0	Median	0.88465	1.0541	13.852	4	0	Median	1.0438	0.98868	5.568	2	0	Median	1.0001	0.99274	0.89594	2	0	Median	5648300000	2798800000	2849500000	771660000	320040000	451620000	1495000000	773940000	721040000	1484200000	640810000	843370000	1897500000	1064000000	833470000	18369	1675	17404	112317;112318;112319;112320;112321;112322;112323;112324;112325;112326;112327	151789;151790;151791;151792;151793;151794;151795;151796;151797;151798;151799;151800;151801;151802;151803;151804;151805;151806;151807;151808;151809;151810;151811	151800			23	
GFGGITHGPPEKK	2	Unmodified	1323.6935	0.69353465	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.188	18.951	3	0.016797	15282	160511_QHF_FH_JSI9i_3	39.561	22.536			0.19692	0.16676	NaN	1	1	Median	0.19692	0.16676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11470000	9972800	1497100	11470000	9972800	1497100	0	0	0	0	0	0	0	0	0	18370	1675	17405	112328	151812	151812			1	
GFGGKFGVQMDR	1	Acetyl (K);Oxidation (M)	1355.6292	0.62921983	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.49								3	2	1	1	1	2	57.367	46.929	2	0.0023921	23888	160513_QHF_FH_JSI10Kac_5	63.283	59.129			0.81526	0.90673	66.768	2	0	Median	NaN	NaN	NaN	0	0	Median	1.284	1.4538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.51766	0.56551	NaN	1	0	Median	9044500	5665300	3379100	1112900	0	1112900	2063200	874100	1189100	0	0	0	5868400	4791200	1077100	18371	2522	17406	112329;112330;112331;112332;112333	151813;151814;151815;151816;151817;151818;151819	151817	2519	1996	7	
GFGGKFGVQTDRQDK	2	Acetyl (K)	1680.822	0.82198264	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	50.068	40.749	3	0.0093968	22164	160513_QHF_FH_JSI11Kac_6	54.09	34.767			0.91205	0.98114	58.361	4	0	Median	2.2471	1.9038	NaN	1	0	Median	1.3067	1.5103	NaN	1	0	Median	0.63657	0.61404	NaN	1	0	Median	0.57656	0.63736	NaN	1	0	Median	101250000	51633000	49616000	11703000	3470200	8232900	52672000	25852000	26820000	22524000	14034000	8489800	14349000	8276000	6073400	18372	2522	17407	112334;112335;112336;112337	151820;151821;151822	151820	2520		3	
GFGGKYGIDK	2	Acetyl (K)	1082.5397	0.53965977	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.575							3	7	1	1	3	3	4	49.331	38.998	2	4.3411E-06	22650	160513_QHF_FH_JSI11Kac_5	119.68	99.16			0.90197	0.88772	59.289	10	0	Median	2.2784	1.9448	NaN	1	0	Median	1.6691	1.8852	10.802	3	0	Median	0.513	0.50487	39.658	3	0	Plateau	0.56896	0.61222	16.477	3	0	Median	201600000	110780000	90823000	22037000	6769400	15268000	51688000	21360000	30328000	65359000	37557000	27802000	62516000	45091000	17425000	18373	2522	17408	112338;112339;112340;112341;112342;112343;112344;112345;112346;112347;112348	151823;151824;151825;151826;151827;151828;151829;151830;151831;151832;151833;151834;151835;151836;151837;151838;151839	151832	2518		17	
GFGGKYGVQK	2	Acetyl (K)	1081.5556	0.55564418	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.793							3	4	4	2	3	3	3	41.162	31.492	2	1.2772E-17	16829	160513_QHF_FH_JSI9Kac_6	171.73	141.55			0.57457	0.63762	55.051	11	0	Median	1.6006	1.3592	6.3545	2	0	Median	1.4077	1.6832	12.2	3	0	Median	0.53573	0.52868	11.37	3	0	Median	0.49542	0.54194	9.4535	3	0	Plateau	273720000	143840000	129880000	38178000	13280000	24898000	77251000	29438000	47813000	87920000	58029000	29891000	70370000	43088000	27282000	18374	2522	17409	112349;112350;112351;112352;112353;112354;112355;112356;112357;112358;112359	151840;151841;151842;151843;151844;151845;151846;151847;151848;151849;151850;151851;151852;151853;151854;151855;151856;151857;151858;151859	151854	2521		20	
GFGHIGIAVPDVYSACK	1	Unmodified	1789.8821	0.88214006	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.48		5	8						1	2	5	3	4	74.063	73.301	2;3	3.8847E-17	63792	160511_QHF_FH_JSI12i_3	128.28	103.49			1.2098	1.1493	44.029	11	1	Median	1.47	1.213	24.499	2	0	Median	0.94641	1.1082	14.266	3	1	Plateau	0.87267	0.78111	55.121	3	0	Median	1.3638	1.3593	5.0862	3	0	Plateau	2118300000	1025100000	1093200000	104610000	41280000	63334000	345520000	164410000	181110000	673050000	376660000	296400000	995150000	442760000	552390000	18375	2221	17410	112360;112361;112362;112363;112364;112365;112366;112367;112368;112369;112370;112371;112372;112373	151860;151861;151862;151863;151864;151865;151866;151867;151868;151869;151870;151871;151872;151873;151874;151875;151876;151877;151878;151879;151880;151881;151882;151883;151884;151885;151886;151887	151886			28	
GFGHPSLVK	1	Unmodified	940.51305	0.51305109	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	2	2	2	26.319	24.739	2;3	0.00013818	20554	160511_QHF_FH_JSI10i_3	66.299	53.34			1.2507	1.148	9.9645	9	0	Median	1.3253	1.055	2.7855	3	0	Median	1.1416	1.3175	14.605	2	0	Median	1.2687	1.1734	3.0857	2	0	Median	1.1549	1.168	5.4313	2	0	Median	1979600000	1025400000	954170000	675990000	315070000	360910000	427170000	213860000	213310000	417150000	221330000	195820000	459270000	275140000	184130000	18376	3176	17411	112374;112375;112376;112377;112378;112379;112380;112381;112382	151888;151889;151890;151891;151892;151893;151894;151895;151896;151897;151898;151899	151892			11	
GFGIFVEGVEPGSK	1	Unmodified	1421.7191	0.7190807	3738	Q8TEU7	RAPGEF6	Rap guanine nucleotide exchange factor 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.998	76.722	2	0.00034615	66608	160511_QHF_FH_JSI12i_3	100.69	91.683			1.187	1.2799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.187	1.2799	NaN	1	1	Median	11530000	4884800	6645400	0	0	0	0	0	0	0	0	0	11530000	4884800	6645400	18377	3738	17412	112383;112384	151900;151901	151901			2	
GFGKDGFR	1	Acetyl (K)	924.44537	0.44536545	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.078	36.649	2	0.010724	20613	160513_QHF_FH_JSI11Kac_5	73.665	52.137			0.92154	0.87907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92154	0.87907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6882500	3150500	3732000	0	0	0	0	0	0	6882500	3150500	3732000	0	0	0	18378	5048	17413	112385	151902	151902	3301		1	
GFGLLGSIFGK	1	Unmodified	1094.6124	0.61243078	3492	Q8N0U8	VKORC1L1	Vitamin K epoxide reductase complex subunit 1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.4	101.32	2	1.942E-14	83905	160511_QHF_FH_JSI10i_3	155.07	116.28			0.76632	0.72501	17.385	4	2	Median	0.88079	0.70408	NaN	1	0	Median	0.63921	0.74655	NaN	1	0	Median	0.66673	0.62896	NaN	1	1	Median	0.92412	0.94962	NaN	1	1	Median	1030600000	588560000	442040000	242400000	129090000	113310000	304710000	182820000	121900000	212140000	133500000	78643000	271350000	143150000	128190000	18379	3492	17414	112386;112387;112388;112389	151903;151904;151905;151906;151907	151904			5	
GFGMIGPK	1	Unmodified	805.41565	0.41564523	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	41.824	40.885	2	0.00069002	34136	160511_QHF_FH_JSI10i_3	99.919	82.993			0.90002	0.92095	24.552	6	2	Median	1.1934	0.98495	NaN	1	0	Median	0.64804	0.76538	31.129	2	1	Median	0.96429	0.88921	NaN	1	0	Median	0.74762	0.80108	39.344	2	1	Median	609120000	319100000	290020000	70940000	31607000	39332000	135130000	82391000	52739000	136370000	66787000	69585000	266680000	138320000	128360000	18380	3074	17415	112390;112391;112392;112393;112394;112395;112396;112397	151908;151909;151910;151911;151912;151913;151914;151915	151910			8	
GFGMIGPK	1	Oxidation (M)	821.41056	0.41055985	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	28.042	27.997	2	0.026384	23443	160511_QHF_FH_JSI12i_3	71.949	54.101			1.0527	1.0261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0527	1.0261	NaN	1	1	Median	43882000	22782000	21101000	0	0	0	0	0	0	0	0	0	43882000	22782000	21101000	18381	3074	17415	112398	151916	151916			1	
GFGSEEGSR	0	Unmodified	924.39372	0.39372381	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	9.3709	6.7947	2	0.00013453	6265	160511_QHF_FH_JSI10i_1	90.709	75.077			0.96948	0.98863	12.165	11	0	Median	1.2793	1.0642	10.413	2	0	Median	0.72358	0.90583	16.908	3	0	Plateau	0.96948	0.98235	13.728	3	0	Median	0.92244	0.95714	9.8759	3	0	Median	1066800000	548140000	518670000	201870000	93538000	108330000	279040000	160670000	118360000	363530000	186500000	177030000	222370000	107420000	114950000	18382	5678	17416	112399;112400;112401;112402;112403;112404;112405;112406;112407;112408;112409	151917;151918;151919;151920;151921;151922;151923;151924;151925;151926;151927	151922			9	
GFGTDEQAIIDCLGSR	0	Unmodified	1737.7992	0.79919829	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										3	1	78.269	77.547	2	1.6447E-35	68146	160511_QHF_FH_JSI11i_2	164.68	140.22			1.8574	2.025	62.213	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85461	0.84643	51.141	2	2	Median	1.8574	2.0342	NaN	1	0	Median	60683000	26032000	34651000	0	0	0	0	0	0	39066000	18110000	20957000	21617000	7922700	13694000	18383	1723	17417	112410;112411;112412;112413	151928;151929;151930;151931;151932	151932			5	
GFGTDEQAIVDVVANR	0	Unmodified	1689.8322	0.83221298	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	79.337	78.635	2;3	1.0769E-51	69382	160511_QHF_FH_JSI9i_2	213.18	177.24			1.208	1.2437	5.2378	10	2	Median	1.4512	1.2255	5.3785	2	0	Median	1.0262	1.2587	5.2492	2	1	Median	1.208	1.2187	1.0081	2	0	Median	1.1685	1.2619	7.415	4	1	Median	849250000	369290000	479950000	178150000	68072000	110080000	183610000	91494000	92116000	285380000	118470000	166920000	202110000	91262000	110850000	18384	1170	17418	112414;112415;112416;112417;112418;112419;112420;112421;112422;112423	151933;151934;151935;151936;151937;151938;151939;151940;151941;151942;151943;151944;151945;151946;151947;151948;151949	151937			17	
GFGTDFK	1	Unmodified	770.3599	0.35990449	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	30.959	30.025	2	0.0093675	25346	160511_QHF_FH_JSI12i_2	79.454	12.419			1.2657	1.4159	90.892	6	3	Median	1.9828	1.6868	NaN	1	0	Median	1.0898	1.286	30.623	2	2	Median	1.2482	1.2554	NaN	1	0	Median	3.2452	3.5058	167.25	2	1	Median	1257300000	318380000	938900000	144350000	57595000	86754000	196760000	74095000	122660000	200400000	84116000	116290000	715770000	102580000	613190000	18385	874	17419	112424;112425;112426;112427;112428;112429	151950;151951;151952;151953;151954;151955	151950			6	
GFGTDFKK	2	Acetyl (K)	940.46543	0.46543219	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.922	38.408	2	0.006081	22662	160513_QHF_FH_JSI11Kac_4	86.833	17.635			0.11699	0.11519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11699	0.11519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2449100	2164000	285120	0	0	0	0	0	0	2449100	2164000	285120	0	0	0	18386	874	17420	112430	151956	151956	582		1	
GFGVDHGQVAEQSAGVLHLR	0	Unmodified	2076.0501	0.050085096	734	O95822	MLYCD	Malonyl-CoA decarboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			58.471	56.936	4	0.012106	47644	160511_QHF_FH_JSI10i_3	34.174	24.516			1.1183	1.3168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1183	1.3168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17060000	9137400	7923100	0	0	0	17060000	9137400	7923100	0	0	0	0	0	0	18387	734	17421	112431	151957	151957			1	
GFGYAEFEDLDSLLSALSLNEESLGNRR	0	Unmodified	3101.4942	0.49417272	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.366	92.645	3	2.08E-40	54137	160513_QHF_FH_JSI10Kac_6	150.18	138.43			0.76835	0.91901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76835	0.91901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	560200000	299230000	260970000	0	0	0	560200000	299230000	260970000	0	0	0	0	0	0	18388	1237	17422	112432	151958	151958			1	
GFGYGQGAGALVHAQ	0	Unmodified	1431.6895	0.6895119	2733	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	51.923	51.805	2	3.0763E-22	45813	160511_QHF_FH_JSI11i_3	212.82	203.81			1.2953	1.279	27.508	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1167	1.0529	NaN	1	0	Median	1.5025	1.5536	NaN	1	1	Median	254510000	102810000	151700000	0	0	0	0	0	0	109550000	50632000	58913000	144970000	52181000	92784000	18389	2733	17423	112433;112434	151959;151960;151961	151959			3	
GFGYKGSCFHR	1	Acetyl (K)	1356.6033	0.60333943	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									9		4	2	3	44.329	35.124	2;3	3.5913E-32	19397	160513_QHF_FH_JSI10Kac_6	196.16	184.01			0.5393	0.58474	164.2	7	2	Median	NaN	NaN	NaN	0	0	Median	1.4648	1.7764	143	3	1	Median	0.18986	0.1804	4.1809	2	0	Median	0.51151	0.5458	9.7471	2	1	Median	550200000	274550000	275650000	0	0	0	299370000	78374000	221000000	205080000	167160000	37914000	45753000	29014000	16738000	18390	2040	17424	112435;112436;112437;112438;112439;112440;112441;112442;112443	151962;151963;151964;151965;151966;151967;151968;151969;151970;151971;151972	151970	2095		10	
GFGYKGSTFHR	1	Acetyl (K)	1297.6204	0.62036971	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	44.071	34.817	3	2.3718E-05	19295	160513_QHF_FH_JSI10Kac_6	93.442	83.554			0.89295	0.96735	79.842	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1544	1.3327	NaN	1	0	Median	0.29966	0.29295	NaN	1	1	Median	0.89295	0.96735	NaN	1	1	Median	24112000	15209000	8903000	0	0	0	12112000	7115400	4996800	8164900	6364400	1800600	3834500	1728900	2105600	18391	1348	17425	112444;112445;112446	151973;151974;151975	151975	1284		3	
GFGYKNSK	2	Acetyl (K)	941.46068	0.46068117	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.687							1	3	2		3	2	1	27.587	18.521	2	0.0026981	10555	160513_QHF_FH_JSI10Kac_5	95.815	71.612			0.58415	0.63319	93.77	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2149	1.4293	6.7055	3	0	Median	0.29347	0.2877	9.5201	2	0	Median	0.18927	0.20706	NaN	1	0	Median	245650000	171000000	74654000	0	0	0	47234000	19659000	27575000	185520000	140230000	45292000	12894000	11108000	1786700	18392	1224	17426	112447;112448;112449;112450;112451;112452	151976;151977;151978;151979	151979	1096		4	
GFGYVTFMHLEALR	0	Unmodified	1639.8181	0.81808324	5632	Q9Y4K3	TRAF6	TNF receptor-associated factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.755	76.506	3	1.8646E-11	40603	160513_QHF_FH_JSI12Kac_6	121.24	102.41			1.0446	1.0504	4.127	4	0	Median	1.1651	1.0195	NaN	1	0	Median	0.90484	1.0881	NaN	1	0	Median	1.152	1.0823	NaN	1	0	Median	0.94726	1.0033	NaN	1	0	Median	407980000	206600000	201380000	77254000	36021000	41233000	144850000	81354000	63492000	146570000	70250000	76323000	39310000	18974000	20335000	18393	5632	17427	112453;112454;112455;112456	151980;151981;151982;151983	151982			2	
GFHCESSAHWPIFK	1	Unmodified	1701.7722	0.77219568	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	54.036	53.799	4	0.015746	46233	160511_QHF_FH_JSI12i_3	39.394	29.055			1.2619	1.289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2619	1.289	NaN	1	1	Median	68907000	34566000	34341000	0	0	0	0	0	0	0	0	0	68907000	34566000	34341000	18394	1867	17428	112457	151984	151984			1	
GFHIVGYFSK	1	Unmodified	1153.592	0.59202969	3919	Q92993	KAT5	Histone acetyltransferase KAT5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.265	58.735	3	0.013724	49085	160511_QHF_FH_JSI10i_3	40.589	35.695			0.41627	0.5062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41627	0.5062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7070000	4815200	2254900	0	0	0	7070000	4815200	2254900	0	0	0	0	0	0	18395	3919	17429	112458	151985	151985			1	
GFHLDVEDYLSGVLILASELSR	0	Unmodified	2432.2587	0.25874047	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.03	96.307	3	4.6679E-22	56891	160513_QHF_FH_JSI10Kac_6	139.44	125.57			0.70623	0.81609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70623	0.81609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52787000	26549000	26238000	0	0	0	52787000	26549000	26238000	0	0	0	0	0	0	18396	2688	17430	112459	151986	151986			1	
GFHMVTNESPLK	1	Unmodified	1358.6653	0.66527099	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	43.488	42.895	3	0.0011493	37603	160511_QHF_FH_JSI11i_3	40.767	32.697			1.2084	1.2456	5.3308	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98924	1.1275	NaN	1	0	Median	1.2873	1.1736	NaN	1	0	Median	1.2084	1.2531	NaN	1	0	Median	226910000	96467000	130440000	0	0	0	41139000	20025000	21114000	71241000	26228000	45013000	114530000	50213000	64317000	18397	2227	17431	112460;112461;112462	151987;151988	151987			2	
GFHQEVFLGK	1	Unmodified	1160.5978	0.59784335	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	2	2	4	44.172	40.657	2;3	1.387E-05	34647	160511_QHF_FH_JSI12i_3	102.62	86.082			1.0388	1.1315	15.933	9	0	Median	1.5123	1.2904	7.0084	2	0	Median	1.0763	1.2908	18.624	2	0	Median	1.0121	0.98559	0.1037	2	0	Median	1.0388	1.122	13.771	3	0	Median	1124900000	533370000	591520000	63568000	22796000	40771000	81357000	46051000	35306000	341160000	191890000	149270000	638810000	272630000	366170000	18398	4374	17432	112463;112464;112465;112466;112467;112468;112469;112470;112471;112472	151989;151990;151991;151992	151991			2	
GFHQVPFAPIVFIER	0	Unmodified	1755.9461	0.94606094	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.98	1		9						4	6	1	2	5	94.027	91.036	2;3	5.1116E-06	79298	160511_QHF_FH_JSI9i_3	87.519	72.824			0.96982	0.96106	20.07	13	2	Median	1.3958	1.139	24.597	5	1	Linear	0.80091	0.92631	NaN	1	0	Median	1.0065	0.95857	9.2837	2	0	Median	0.96982	0.9975	18.264	5	1	Median	1094800000	540280000	554500000	344470000	145390000	199080000	70471000	38593000	31879000	333510000	169310000	164200000	346320000	186990000	159340000	18399	1609	17433	112473;112474;112475;112476;112477;112478;112479;112480;112481;112482;112483;112484;112485;112486	151993;151994;151995;151996;151997;151998;151999;152000;152001;152002;152003;152004;152005;152006;152007;152008;152009;152010;152011;152012;152013;152014	152007			22	
GFIAGIDLK	1	Unmodified	932.53312	0.53311783	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		1	2	2	2	69.133	66.283	2	1.3681E-05	57243	160511_QHF_FH_JSI12i_2	109.86	83.26			0.92124	1.0073	28.217	5	2	Median	0.81181	0.6958	NaN	1	1	Median	0.82407	1.0073	NaN	1	0	Median	1.1528	1.1349	26.831	2	1	Median	1.1858	1.3516	NaN	1	0	Median	176340000	89349000	86991000	38877000	26319000	12558000	22761000	7440500	15320000	61648000	32321000	29327000	53053000	23268000	29786000	18400	4449	17434	112487;112488;112489;112490;112491;112492;112493	152015;152016;152017;152018;152019;152020;152021;152022;152023	152016			8	
GFIDALTR	0	Unmodified	891.48142	0.48141661	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	57.331	55.79	2	0.0028057	46687	160511_QHF_FH_JSI10i_3	77.318	26.352			0.76132	0.8741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76132	0.8741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50001000	30317000	19684000	0	0	0	50001000	30317000	19684000	0	0	0	0	0	0	18401	5541	17435	112494;112495	152024;152025	152024			2	
GFIDDDK	1	Unmodified	808.3603	0.36029842	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.379	19.87	2	0.013326	17238	160511_QHF_FH_JSI12i_1	67.981	38.832			0.90415	0.97069	9.8528	4	0	Median	1.2896	1.0584	NaN	1	0	Median	0.84666	0.99177	NaN	1	0	Median	0.96555	0.95006	NaN	1	0	Median	0.81281	0.8379	NaN	1	0	Median	394290000	210620000	183670000	92767000	43531000	49236000	83605000	48404000	35201000	115610000	65201000	50409000	102310000	53486000	48823000	18402	3922	17436	112496;112497;112498;112499	152026;152027;152028	152027			3	
GFIDLHSYSQLLMYPYGYSVK	1	Unmodified	2480.2086	0.20861915	5326	Q9UI42	CPA4	Carboxypeptidase A4	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	94.141	84.699	3	0.0041507	45915	160513_QHF_FH_JSI12Kac_6	56.29	43.102			0.89952	0.96138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89952	0.96138	NaN	1	1	Median	42071000	30728000	11343000	0	0	0	0	0	0	0	0	0	42071000	30728000	11343000	18403	5326	17437	112500	152029;152030	152030			2	
GFIGPGIDVPAPDMSTGER	0	Unmodified	1914.9146	0.9145624	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	2	1	1	82.459	81.819	2;3	2.0609E-16	72172	160511_QHF_FH_JSI9i_2	122.45	100.25			0.91869	1.0368	23.953	5	3	Median	1.5475	1.2861	NaN	1	1	Median	0.68355	0.81928	4.9815	2	2	Median	1.3058	1.3501	NaN	1	0	Median	0.91869	1.0368	NaN	1	0	Median	173860000	93361000	80495000	35216000	14511000	20705000	73574000	47660000	25914000	35126000	17215000	17911000	29939000	13975000	15964000	18404	762	17438	112501;112502;112503;112504;112505;112506	152031;152032;152033;152034;152035;152036;152037;152038;152039;152040;152041	152037			11	
GFIGPGIDVPAPDMSTGER	0	Oxidation (M)	1930.9095	0.90947702	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	72.121	71.909	2	0.0011254	65362	160511_QHF_FH_JSI12i_1	60.49	47.509			0.41907	0.47261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41907	0.47261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30132000	24661000	5470600	0	0	0	30132000	24661000	5470600	0	0	0	0	0	0	18405	762	17438	112507;112508	152042;152043	152042		268	2	
GFIMAEVMK	1	Unmodified	1024.5086	0.50855934	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	69.912	66.047	2	1.9632E-05	59008	160511_QHF_FH_JSI10i_2	119.27	101.24			0.85422	0.86791	14.815	10	3	Median	1.0272	0.87985	14.501	2	1	Median	0.7403	0.86945	6.6207	2	0	Median	0.98142	0.80715	15.461	3	1	Plateau	0.73394	0.78924	23.821	3	1	Median	1405400000	809090000	596260000	152760000	70739000	82026000	235290000	115190000	120090000	562750000	353080000	209670000	454550000	270070000	184480000	18406	4992	17439	112509;112510;112511;112512;112513;112514;112515;112516;112517;112518	152044;152045;152046;152047;152048;152049;152050;152051;152052;152053;152054;152055;152056	152051			12	
GFINMPSVAK	1	Unmodified	1062.5532	0.55320134	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	59.694	58.865	2	0.018433	52212	160511_QHF_FH_JSI11i_3	65.305	51.726			0.81357	0.72696	22.584	4	0	Median	0.91641	0.76322	NaN	1	0	Median	0.95562	1.0707	NaN	1	0	Median	0.72228	0.69242	NaN	1	0	Median	0.64091	0.6417	NaN	1	0	Median	188850000	117740000	71106000	12842000	5776800	7065100	21355000	9850700	11505000	61747000	37600000	24147000	92903000	64514000	28389000	18407	3849	17440	112519;112520;112521;112522	152057;152058;152059;152060	152057			1	
GFISQLLPTVFK	1	Unmodified	1348.7755	0.77547336	5402	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			101.52	101.36	2	0.01497	83987	160511_QHF_FH_JSI10i_3	78.136	49.928			0.79863	0.77216	16.831	2	0	Median	0.85082	0.68552	NaN	1	0	Median	0.74964	0.86976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72397000	43401000	28996000	29658000	18352000	11306000	42739000	25049000	17690000	0	0	0	0	0	0	18408	5402	17441	112523;112524	152061;152062	152061			0	
GFITIVDVQR	0	Unmodified	1146.6397	0.63970816	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.61		5	2					4	4	4	3	3	5	72.306	66.547	2	5.5538E-12	34511	160513_QHF_FH_JSI12Kac_6	151.97	112.67			0.9755	1.0075	13.519	14	2	Median	1.1812	0.99494	12.808	4	2	Median	0.83386	0.97942	11.916	3	0	Median	0.95771	0.94657	13.917	3	0	Median	0.98076	1.0436	20.02	4	0	Median	798990000	398380000	400600000	137480000	64617000	72863000	170620000	95863000	74753000	274530000	141070000	133460000	216360000	96832000	119530000	18409	1558	17442	112525;112526;112527;112528;112529;112530;112531;112532;112533;112534;112535;112536;112537;112538;112539	152063;152064;152065;152066;152067;152068;152069;152070;152071;152072;152073;152074;152075;152076;152077;152078;152079;152080;152081;152082;152083	152081			19	
GFIYVHKPPVHIR	1	Unmodified	1561.8882	0.88815213	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									8	2	1	2	3	54.57	45.072	4	0.013607	23913	160513_QHF_FH_JSI10Kac_6	54.267	49.189			1.0017	1.059	57.508	8	0	Median	0.6105	0.51884	41.653	2	0	Median	1.0545	1.2177	NaN	1	0	Median	0.83542	0.82255	15.999	2	0	Median	1.7518	1.9354	8.4192	3	0	Median	115350000	56666000	58685000	30424000	18529000	11894000	53146000	25985000	27161000	12015000	4816800	7197900	19766000	7334300	12432000	18410	2277	17443	112540;112541;112542;112543;112544;112545;112546;112547	152084;152085;152086;152087;152088	152088			0	
GFKFFQK	2	Acetyl (K)	942.49634	0.49633839	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	16	0									4	1	1	1	1	70.064	61.188	2	3.5238E-07	33143	160513_QHF_FH_JSI11Kac_6	138.62	113.69			0.77659	0.76482	56.482	4	0	Median	0.98441	0.84735	NaN	1	0	Median	0.91244	1.097	NaN	1	0	Median	0.31581	0.29758	NaN	1	0	Median	0.66096	0.69033	NaN	1	0	Median	255120000	180230000	74886000	14238000	8031000	6206700	42121000	21331000	20790000	164640000	131760000	32878000	34121000	19109000	15011000	18411	1281	17444	112548;112549;112550;112551	152089;152090	152089	1193		2	
GFKPGLDMR	1	Unmodified	1019.5222	0.52223557	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			34.249	32.829	3	0.033944	27454	160511_QHF_FH_JSI10i_3	35.178	17.793			1.2736	1.5477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2736	1.5477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82707000	34902000	47804000	0	0	0	82707000	34902000	47804000	0	0	0	0	0	0	18412	3353	17445	112552	152091	152091			1	
GFLAEEK	1	Unmodified	792.40177	0.4017693	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	23.792	22.555	2	0.036665	18773	160511_QHF_FH_JSI12i_2	50.127	35.714			0.65524	0.72183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65524	0.72183	NaN	1	1	Median	74952000	35965000	38987000	0	0	0	0	0	0	0	0	0	74952000	35965000	38987000	18413	3700	17446	112553	152092	152092			1	
GFLAEMK	1	Unmodified	794.39966	0.39966081	34	A6ZKI3;Q17RB0;Q9BWD3	FAM127A;FAM127C;FAM127B	Protein FAM127A;Protein FAM127C;Protein FAM127B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		39.562	39.103	2	0.031469	33602	160511_QHF_FH_JSI11i_2	53.351	32.87			1.6075	1.6807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6075	1.6807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78246000	30903000	47342000	0	0	0	0	0	0	78246000	30903000	47342000	0	0	0	18414	34	17447	112554	152093	152093			1	
GFLAGYVVAK	1	Unmodified	1023.5753	0.57531699	89	L0R6Q1	SLC35A4		yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.21			5					3	4	3	4	3	2	65.209	59.13	2	1.3844E-08	31314	160513_QHF_FH_JSI9Kac_6	141.78	117.63			1.0511	1.0085	16.803	12	2	Median	1.0648	0.89285	18.296	3	0	Plateau	0.94924	1.1193	15.238	4	2	Median	0.96482	0.92145	12.802	3	0	Plateau	1.1074	1.1212	8.2395	2	0	Median	1639400000	840110000	799300000	304900000	154380000	150530000	485070000	260650000	224420000	468070000	249610000	218450000	381370000	175470000	205900000	18415	89	17448	112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566	152094;152095;152096;152097;152098;152099;152100;152101;152102;152103;152104;152105;152106;152107;152108;152109;152110;152111;152112;152113;152114	152108			21	
GFLALLGLQHTK	1	Unmodified	1296.7554	0.75540662	3881	Q92766	RREB1	Ras-responsive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	81.34	71.962	3	5.8808E-25	38126	160513_QHF_FH_JSI12Kac_6	169.52	152.89			1.2769	1.2715	0.29807	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3509	1.2741	NaN	1	0	Median	1.207	1.2688	NaN	1	0	Median	185390000	69910000	115480000	0	0	0	0	0	0	153350000	55851000	97498000	32044000	14060000	17984000	18416	3881	17449	112567;112568;112569;112570	152115;152116;152117;152118;152119;152120	152120			6	
GFLEDLAPPER	0	Unmodified	1242.6245	0.62445203	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.15	1	4	1					3		2	2	2	3	69.665	65.664	2	1.9112E-23	57797	160511_QHF_FH_JSI11i_2	179	163.42			1.0106	0.95292	43.102	9	3	Median	2.0637	1.7685	87.448	2	0	Median	0.89489	1.071	28.095	2	1	Median	0.90331	0.88301	19.786	2	1	Median	0.87901	0.95105	12.231	3	1	Median	502550000	261360000	241190000	80234000	38806000	41428000	156880000	93054000	63823000	134640000	60081000	74556000	130810000	69419000	61388000	18417	1790	17450	112571;112572;112573;112574;112575;112576;112577;112578;112579	152121;152122;152123;152124;152125;152126;152127;152128;152129;152130;152131;152132;152133;152134	152127			14	
GFLEFVEDFIQVPR	0	Unmodified	1694.8668	0.86680757	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.02	103.03	2	4.3029E-05	92116	160511_QHF_FH_JSI11i_3	158.05	133.66			0.97695	0.97334	2.263	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.034	0.98905	NaN	1	1	Median	0.92303	0.95789	NaN	1	0	Median	64909000	35050000	29859000	0	0	0	0	0	0	26162000	12079000	14083000	38747000	22971000	15776000	18418	1725	17451	112580;112581	152135;152136	152135			2	
GFLFGPSLAQELGLGCVLIR	0	Unmodified	2146.1609	0.1608811	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	98.617	91.035	2;3	3.7577E-32	49109	160513_QHF_FH_JSI12Kac_6	211.51	176.31			1.8059	2.0542	64.181	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0871	1.3048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3	3.234	NaN	1	1	Median	174430000	79752000	94682000	0	0	0	153150000	74127000	79021000	0	0	0	21285000	5625000	15661000	18419	877	17452	112582;112583	152137;152138	152137			2	
GFLFGPSLAQELGLGCVLIRK	1	Unmodified	2274.2558	0.25584412	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.294	90.573	3	5.2287E-13	52422	160513_QHF_FH_JSI10Kac_6	106.49	96.913			1.0086	1.1996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0086	1.1996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160040000	76166000	83875000	0	0	0	160040000	76166000	83875000	0	0	0	0	0	0	18420	877	17453	112584	152139	152139			1	
GFLFLHTLFIQR	0	Unmodified	1490.8398	0.83980496	3442	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	88.482	80.363	2;3	3.8869E-76	42950	160513_QHF_FH_JSI12Kac_6	232.14	203.86			1.0377	0.95799	15.504	7	1	Median	1.0691	0.92629	4.7589	2	1	Median	0.66447	0.77869	10.206	2	0	Median	1.1732	1.0923	5.2049	2	0	Median	0.97999	1.0508	NaN	1	0	Median	1112200000	567220000	545000000	315430000	152440000	162990000	478850000	284110000	194740000	223750000	96413000	127330000	94189000	34250000	59938000	18421	3442	17454	112585;112586;112587;112588;112589;112590;112591	152140;152141;152142;152143;152144;152145;152146;152147;152148;152149;152150	152146			9	
GFLGCFPDIIGTHK	1	Unmodified	1560.7759	0.77588407	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	85.422	84.78	3	2.914E-05	71020	160511_QHF_FH_JSI10i_3	84.892	74.407			1.1126	0.98109	16.484	4	0	Median	1.2058	0.98605	NaN	1	0	Median	0.81613	0.96073	NaN	1	0	Median	1.0266	0.97614	NaN	1	0	Median	1.3338	1.3538	NaN	1	0	Median	102280000	49777000	52498000	20354000	11375000	8978100	16837000	9319000	7517800	30805000	15447000	15358000	34280000	13636000	20644000	18422	5685	17455	112592;112593;112594;112595	152151;152152;152153;152154;152155;152156	152153			6	
GFLHQLQLLLWK	1	Unmodified	1494.8711	0.87110508	4556	Q9BZC7	ABCA2	ATP-binding cassette sub-family A member 2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			90.365	84.644	2;3	1.1205E-19	48081	160513_QHF_FH_JSI10Kac_6	152.07	140.86			0.78297	0.92966	5.0734	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78297	0.92966	5.0734	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176050000	96934000	79114000	0	0	0	176050000	96934000	79114000	0	0	0	0	0	0	18423	4556	17456	112596;112597	152157;152158;152159	152158			2	
GFLIDGYPR	0	Unmodified	1036.5342	0.53418046	776	P00568;Q9Y6K8	AK1;AK5	Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		2	2	2	3	61.072	60.202	2	0.0025725	51495	160511_QHF_FH_JSI12i_2	73.665	48.742			0.75762	0.76534	27.802	8	6	Median	0.75164	0.62231	30.971	2	1	Median	0.63208	0.75209	34.591	2	1	Median	0.7919	0.78164	20.965	2	2	Median	0.88879	0.94831	32.03	2	2	Median	2164700000	1343200000	821550000	412650000	268730000	143920000	487410000	321090000	166320000	695740000	418590000	277160000	568910000	334760000	234150000	18424	776	17457	112598;112599;112600;112601;112602;112603;112604;112605;112606	152160;152161;152162;152163;152164;152165;152166;152167	152161			8	
GFLKEEDLTEK	2	Acetyl (K)	1349.6715	0.6714618	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	1	0	0	1		By MS/MS			14	0							1				1			65.41	54.713	2	0.012064	29718	160513_QHF_FH_JSI10Kac_4	73.985	35.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18425	957	17458	112607	152168	152168	724		1	
GFLLLASLR	0	Unmodified	988.60695	0.60695147	68	CON__Q28194;P07996	THBS1	Thrombospondin-1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			84.656	78.988	2	4.4393E-05	44145	160513_QHF_FH_JSI10Kac_6	119.27	69.235		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18426	68	17459	112608	152169	152169			1	
GFLMHFLK	1	Unmodified	991.53134	0.53134369	555	O75665	OFD1	Oral-facial-digital syndrome 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	12.8	5.63			1						3	1	1	1	1	71.544	65.119	3	0.00045816	35659	160513_QHF_FH_JSI10Kac_6	88.942	72.74			1.0639	0.9971	11.569	4	1	Median	1.0619	0.91231	NaN	1	0	Median	0.77791	0.90772	NaN	1	1	Median	1.0985	1.0898	NaN	1	0	Median	1.0659	1.1306	NaN	1	0	Median	45061000	21035000	24026000	12417000	4697500	7719100	11803000	6959700	4843300	7907600	3518700	4389000	12934000	5859100	7075100	18427	555	17460	112609;112610;112611;112612	152170;152171;152172	152172			3	
GFLNQFTEDKPTLNFFYQQVK	2	Unmodified	2563.2747	0.27472488	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	100.68	100.63	3	2.9479E-46	89646	160511_QHF_FH_JSI11i_3	205.62	176.18			0.93423	0.86054	8.2231	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74764	0.87971	NaN	1	1	Median	0.93423	0.86054	NaN	1	0	Median	1.0164	1.002	NaN	1	0	Median	241170000	138040000	103120000	0	0	0	76951000	48737000	28214000	137050000	76490000	60560000	27168000	12817000	14351000	18428	2229	17461	112613;112614;112615	152173;152174	152173			2	
GFLNSSELSGLPAGPDR	0	Unmodified	1715.8479	0.84786304	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	3.9	1	6	2					1		1	3	3	3	73.358	71.647	2	1.6081E-116	64395	160511_QHF_FH_JSI11i_3	271.56	228.25			0.94993	0.96875	9.8047	9	3	Median	1.2398	1.0333	NaN	1	0	Median	0.75611	0.94065	14.908	3	2	Plateau	0.94993	0.93625	6.0585	3	0	Median	0.90927	0.95593	8.6509	2	1	Median	507190000	251750000	255450000	63551000	27530000	36021000	162600000	87730000	74872000	146470000	69900000	76568000	134570000	66586000	67984000	18429	1568	17462	112616;112617;112618;112619;112620;112621;112622;112623;112624;112625	152175;152176;152177;152178;152179;152180;152181;152182;152183;152184;152185;152186;152187;152188	152176			14	
GFLNSSELSGLPAGPDREGSLK	1	Unmodified	2230.123	0.12297527	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	2	1	70.779	70.081	2;3	3.5077E-37	62475	160511_QHF_FH_JSI11i_3	194.37	171.04			0.88867	0.85944	16.083	7	1	Median	1.1234	0.93498	30.173	2	0	Median	0.76925	0.90056	21.43	2	0	Median	0.96523	0.90668	11.571	2	0	Median	0.86199	0.85944	NaN	1	1	Median	2421200000	1229100000	1192100000	591000000	263640000	327360000	885590000	493380000	392210000	793130000	393600000	399530000	151490000	78517000	72972000	18430	1568	17463	112626;112627;112628;112629;112630;112631;112632	152189;152190;152191;152192;152193;152194;152195;152196;152197;152198;152199;152200;152201;152202;152203;152204	152190			16	
GFLPETK	1	Unmodified	790.4225	0.42250475	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	1	2	33.492	32.719	2	0.012699	29745	160511_QHF_FH_JSI12i_1	73.039	39.3			1.0617	1.1325	11.04	6	1	Median	1.4288	1.2043	NaN	1	0	Median	0.83034	0.99247	5.76	2	0	Median	1.1285	1.1488	NaN	1	0	Median	1.1154	1.2053	10.825	2	1	Median	601930000	317100000	284830000	93531000	43732000	49799000	197030000	113150000	83880000	164280000	83738000	80547000	147080000	76478000	70604000	18431	4361	17464	112633;112634;112635;112636;112637;112638;112639	152205;152206;152207;152208;152209;152210;152211	152207			7	
GFLQQHILK	1	Unmodified	1082.6237	0.62366417	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	1	2	2	43.124	42.382	2;3	1.1884E-06	37028	160511_QHF_FH_JSI11i_3	101.64	39.965			0.95728	0.91714	29.429	7	0	Median	0.75566	0.63038	53.74	2	0	Median	0.76229	0.91714	NaN	1	0	Median	0.98259	0.93521	3.0939	2	0	Median	0.91693	0.92452	12.967	2	0	Median	514810000	300000000	214800000	108770000	60462000	48303000	78557000	47431000	31126000	107350000	55567000	51785000	220130000	136540000	83587000	18432	3009	17465	112640;112641;112642;112643;112644;112645;112646;112647	152212;152213;152214;152215;152216;152217;152218;152219;152220;152221	152212			8	
GFLSGLLDNVK	1	Unmodified	1161.6394	0.63937381	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	85.794	85.151	2	1.1411E-47	73849	160511_QHF_FH_JSI12i_3	214.93	194.41			0.98593	1.0024	9.1001	4	0	Median	1.2569	1.0056	NaN	1	0	Median	0.99176	1.1602	NaN	1	0	Median	0.97079	0.93466	NaN	1	0	Median	0.98013	0.9992	NaN	1	0	Median	1196600000	577160000	619450000	261800000	110390000	151410000	282540000	138540000	144000000	235260000	112600000	122660000	417010000	215640000	201370000	18433	346	17466	112648;112649;112650;112651	152222;152223;152224;152225;152226;152227;152228	152228			7	
GFLSLQYMIR	0	Unmodified	1226.6482	0.64816436	435	O60671	RAD1	Cell cycle checkpoint protein RAD1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	84.463	76.99	2	2.2E-24	43433	160513_QHF_FH_JSI10Kac_6	176.6	143.34			0.98129	1.0538	2.3505	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87087	1.0364	NaN	1	0	Median	1.1057	1.0714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	280780000	151200000	129580000	0	0	0	212670000	120050000	92616000	68108000	31145000	36963000	0	0	0	18434	435	17467	112652;112653;112654	152229;152230;152231	152231			3	
GFLSMQSLASHK	1	Unmodified	1304.6547	0.6547063	240	O15049	N4BP3	NEDD4-binding protein 3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.43	52.872	3	0.00090314	44181	160511_QHF_FH_JSI10i_3	55.261	49.419			0.78304	0.9144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78304	0.9144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9941400	5326600	4614800	0	0	0	9941400	5326600	4614800	0	0	0	0	0	0	18435	240	17468	112655	152232	152232			1	
GFLVIGYSLEK	1	Unmodified	1224.6754	0.67542497	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	81.793	76.2	2	1.6937E-05	42062	160513_QHF_FH_JSI10Kac_6	105.4	86.616			1.1	1.2738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1	1.2738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55140000	23590000	31550000	0	0	0	55140000	23590000	31550000	0	0	0	0	0	0	18436	1718	17469	112656;112657	152233;152234	152234			2	
GFLVMGSK	1	Unmodified	837.44186	0.44185998	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	2	2	1	48.915	45.294	2	0.0030848	37296	160511_QHF_FH_JSI9i_3	75.213	61.541			0.96803	1.0285	16.23	6	2	Median	1.2497	1.0126	NaN	1	0	Median	0.82766	0.97713	9.4364	2	1	Median	0.91809	0.87089	30.067	2	1	Median	1.0298	1.0607	NaN	1	0	Median	477750000	231120000	246630000	57144000	26984000	30160000	98389000	51663000	46726000	136810000	68053000	68756000	185410000	84422000	100990000	18437	4719	17470	112658;112659;112660;112661;112662;112663	152235;152236;152237;152238;152239;152240;152241	152239			7	
GFLWDEGFHQLVVQR	0	Unmodified	1829.9213	0.92130275	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	3	1	1	90.314	89.651	2;3	1.7977E-10	79680	160511_QHF_FH_JSI11i_3	176.42	153.55			0.93244	0.98353	20.456	5	1	Median	1.7649	1.4912	NaN	1	0	Median	0.87466	1.0236	6.9085	2	1	Median	0.93244	0.87208	NaN	1	0	Median	1.0089	0.98353	NaN	1	0	Median	214180000	110200000	103980000	10576000	4626000	5950400	55697000	28742000	26955000	19794000	9324200	10470000	128110000	67504000	60606000	18438	2466	17471	112664;112665;112666;112667;112668;112669	152242;152243;152244;152245;152246;152247	152242			6	
GFLYFNR	0	Unmodified	915.46029	0.46028724	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		66.229	57.36	2	1.8248E-05	31635	160513_QHF_FH_JSI10Kac_6	124.94	106.8			0.96997	0.97019	8.4371	3	2	Median	1.1608	0.98497	NaN	1	1	Median	0.70987	0.84514	NaN	1	1	Median	0.96997	0.97019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151590000	82569000	69024000	43649000	21468000	22181000	72896000	43043000	29853000	35048000	18059000	16989000	0	0	0	18439	2297	17472	112670;112671;112672;112673;112674	152248;152249;152250;152251;152252;152253	152253			6	
GFMEMNGR	0	Unmodified	940.38951	0.38950683	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	29.194	28.865	2	0.00035431	24240	160511_QHF_FH_JSI12i_3	111.04	95.403			0.9567	0.97909	34.178	3	0	Median	NaN	NaN	NaN	0	0	Median	0.5109	0.63557	NaN	1	0	Median	1.2888	1.248	NaN	1	0	Median	0.9567	0.97909	NaN	1	0	Median	159090000	87275000	71811000	0	0	0	27785000	17827000	9957400	64133000	34305000	29828000	67168000	35142000	32026000	18440	5709	17473	112675;112676;112677	152254;152255;152256;152257	152257			4	
GFMTAHGQPDQPR	0	Unmodified	1440.6568	0.65683157	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.8	0.4		1	4								3	2		20.461	19.671	2;3	5.8955E-23	16465	160511_QHF_FH_JSI11i_3	151.15	129.06			0.90826	0.96583	23.893	4	2	Median	NaN	NaN	NaN	0	0	Median	0.87244	1.0551	25.448	3	2	Median	0.94554	0.87555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	193910000	97060000	96850000	0	0	0	125220000	65707000	59512000	68690000	31353000	37337000	0	0	0	18441	4621	17474	112678;112679;112680;112681;112682	152258;152259;152260;152261;152262	152260			5	
GFMVQTGDPTGTGR	0	Unmodified	1422.6562	0.65616287	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	3	3					3			1	3	3	2	44.98	40.601	2	1.2906E-14	35748	160511_QHF_FH_JSI9i_2	158.56	129.87			0.81667	1.0887	30.478	8	2	Linear	1.2103	1.0203	NaN	1	0	Median	0.80177	0.93309	36.527	3	1	Plateau	1.2776	1.2686	20.937	2	0	Median	1.1017	1.1742	55.09	2	1	Median	391940000	203110000	188840000	40678000	17333000	23344000	181760000	104870000	76890000	59558000	28303000	31254000	109950000	52604000	57349000	18442	4674	17475	112683;112684;112685;112686;112687;112688;112689;112690;112691	152263;152264;152265;152266;152267;152268;152269;152270;152271;152272	152268			10	
GFMVQTGDPTGTGR	0	Oxidation (M)	1438.6511	0.65107749	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	1	0			By MS/MS		14	0							1					1		42.605	32.468	2	0.0010471	19596	160513_QHF_FH_JSI11Kac_4	94.297	84.609			1.2215	1.136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2215	1.136	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1301800	569920	731920	0	0	0	0	0	0	1301800	569920	731920	0	0	0	18443	4674	17475	112692	152273	152273		2510	1	
GFNAVMIR	0	Unmodified	906.47456	0.47455709	374	O43772	SLC25A20	Mitochondrial carnitine/acylcarnitine carrier protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			54.726	46.163	2	0.012427	25446	160513_QHF_FH_JSI10Kac_6	58.194	19.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18444	374	17476	112693	152274	152274			1	
GFNDDVLLQIVHFLLNRPK	1	Unmodified	2237.2321	0.23207221	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	99.586	91.453	3;4	1.2221E-138	54830	160513_QHF_FH_JSI10Kac_6	265.87	247.33			0.82752	0.86573	6.1512	9	4	Median	1.0392	0.90933	7.7091	2	0	Median	0.78906	0.81679	7.8774	3	2	Plateau	0.86665	0.82988	5.0849	2	1	Median	0.83566	0.88125	2.3263	2	1	Median	23140000000	12626000000	10514000000	3336100000	1569400000	1766700000	17606000000	9944900000	7660800000	1105900000	557740000	548180000	1091800000	553930000	537870000	18445	4890	17477	112694;112695;112696;112697;112698;112699;112700;112701;112702	152275;152276;152277;152278;152279;152280;152281;152282;152283;152284;152285	152282			11	
GFNKVVLK	2	Acetyl (K)	945.56475	0.56475231	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.737							3	4	2	1	2	3	3	58.475	47.946	2	0.00012346	25856	160513_QHF_FH_JSI11Kac_6	126.67	72.118			0.82328	0.85753	28.22	9	0	Median	1.0117	0.85753	NaN	1	0	Median	0.87761	1.0496	8.9313	2	0	Median	0.54025	0.53145	8.2435	3	0	Plateau	0.92502	1.0092	25.452	3	0	Median	213100000	125750000	87353000	14079000	6614800	7464300	39654000	20976000	18677000	112160000	73615000	38544000	47211000	24544000	22667000	18446	2094	17478	112703;112704;112705;112706;112707;112708;112709;112710;112711	152286;152287;152288;152289;152290;152291;152292;152293;152294;152295;152296;152297	152289	2181;2193		12	
GFNLFCK	1	Unmodified	884.42146	0.42145889	3448	Q8IXQ6	PARP9	Poly [ADP-ribose] polymerase 9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.481	57.227	2	0.014715	49218	160511_QHF_FH_JSI12i_3	65.672	39.733			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8330300	0	8330300	0	0	0	0	0	0	0	0	0	8330300	0	8330300	18447	3448	17479	112712	152298	152298			1	
GFNLNPLNQDELK	1	Unmodified	1500.7573	0.75725712	5000	Q9NUG6	PDRG1	p53 and DNA damage-regulated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		73.905	73.275	2	8.631E-05	64258	160511_QHF_FH_JSI11i_2	162.38	142.08			0.50125	0.49828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50125	0.49828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66080000	39799000	26281000	0	0	0	0	0	0	66080000	39799000	26281000	0	0	0	18448	5000	17480	112713;112714	152299;152300	152300			2	
GFNLPYQDAR	0	Unmodified	1179.5673	0.5672715	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.62	2	3					1	4		1	4	3	2	58.183	51.856	2	3.2213E-08	44900	160511_QHF_FH_JSI11i_2	125.82	115.53			0.77914	0.89677	42.07	9	2	Median	0.92553	0.76938	NaN	1	1	Median	0.85522	1.0392	55.154	4	1	Linear	0.94184	0.94518	6.5149	2	0	Median	0.81762	0.92372	4.186	2	0	Median	588030000	327820000	260210000	3374800	1688400	1686300	253620000	149890000	103740000	191900000	98465000	93439000	139130000	77782000	61346000	18449	3634	17481	112715;112716;112717;112718;112719;112720;112721;112722;112723;112724	152301;152302;152303;152304;152305;152306;152307;152308;152309;152310;152311;152312	152305			12	
GFNLPYQDARK	1	Unmodified	1307.6622	0.66223452	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	43.152	42.314	3	2.3379E-05	36950	160511_QHF_FH_JSI11i_3	71.159	62.646			1.0169	0.93724	17.443	4	1	Median	1.0437	0.8333	NaN	1	1	Median	0.99073	1.1327	NaN	1	0	Median	1.1106	1.0542	NaN	1	0	Median	0.7902	0.79307	NaN	1	0	Median	423520000	250450000	173070000	129530000	60440000	69094000	111010000	67933000	43072000	130310000	84489000	45822000	52670000	37587000	15083000	18450	3634	17482	112725;112726;112727;112728	152313;152314;152315	152313			3	
GFNMSIPMPGHPVNFSSVTLEQAR	0	Unmodified	2615.2625	0.26246241	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			96.054	95.169	3	5.8253E-05	79241	160511_QHF_FH_JSI10i_3	52.483	49.517			0.93805	0.9505	2.9836	2	1	Median	1.1131	0.97077	NaN	1	1	Median	0.79052	0.93066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20528000	10089000	10439000	4596900	1650900	2946100	15931000	8438200	7493000	0	0	0	0	0	0	18451	680	17483	112729;112730	152316;152317;152318;152319	152318			4	
GFNPAQPLNIR	0	Unmodified	1225.6568	0.65675521	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	4	2	58.905	58.113	2	5.5732E-23	50175	160511_QHF_FH_JSI12i_3	190.26	169.36			0.94615	0.94977	7.4781	5	0	Median	1.0915	0.94676	NaN	1	0	Median	0.77243	0.96108	NaN	1	0	Median	0.94615	0.94978	NaN	1	0	Median	0.84041	0.87476	11.636	2	0	Median	457950000	243060000	214880000	97717000	47306000	50412000	68285000	39269000	29017000	104210000	54717000	49491000	187730000	101770000	85963000	18452	2303	17484	112731;112732;112733;112734;112735;112736;112737;112738;112739	152320;152321;152322;152323;152324;152325;152326;152327;152328;152329;152330;152331	152331			12	
GFNPPVLVFVQSIER	0	Unmodified	1700.925	0.92499115	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	0	By MS/MS		By MS/MS		9.5	6.5			1						1	1		1		102.04	101.85	2	0.00049799	49349	160513_QHF_FH_JSI11Kac_6	113.65	88.794			1.247	1.0364	NaN	1	0	Median	1.247	1.0364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16405000	6043400	10362000	16405000	6043400	10362000	0	0	0	0	0	0	0	0	0	18453	5530	17485	112740;112741	152332;152333	152332			2	
GFNSVATAR	0	Unmodified	921.46683	0.46682918	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	2	1	18.282	17.701	2	5.6436E-05	14393	160511_QHF_FH_JSI10i_3	111.74	86.795			0.91675	1.0989	22.018	7	2	Median	1.6119	1.2892	NaN	1	0	Median	0.88778	1.0989	9.0937	3	1	Plateau	1.3076	1.2755	45.771	2	1	Median	0.91276	0.97432	NaN	1	0	Median	972360000	482870000	489480000	155210000	59753000	95456000	625920000	332680000	293250000	120650000	59487000	61162000	70576000	30958000	39619000	18454	862	17486	112742;112743;112744;112745;112746;112747;112748	152334;152335;152336;152337;152338;152339;152340;152341;152342	152335			9	
GFNYHQGPEWLWPIGYFLR	0	Unmodified	2379.1589	0.15890726	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	97.303	89.424	2;3	9.673E-69	53068	160513_QHF_FH_JSI10Kac_6	245.4	220.07			1.0979	1.2514	25.536	5	0	Median	2.3255	1.9902	NaN	1	0	Median	0.95222	1.1288	15.819	2	0	Median	1.3261	1.2514	NaN	1	0	Median	1.0979	1.1592	NaN	1	0	Median	1430100000	663810000	766280000	153810000	44634000	109170000	856500000	437590000	418910000	156670000	53699000	102970000	263120000	127890000	135220000	18455	1435	17487	112749;112750;112751;112752;112753;112754	152343;152344;152345;152346;152347;152348;152349	152349			7	
GFNYTVFDCK	1	Unmodified	1249.5438	0.54375887	4178	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.627	60.122	2	0.0083282	52188	160511_QHF_FH_JSI11i_2	50.353	16.123			1.1053	1.1453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1053	1.1453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39987000	20121000	19866000	0	0	0	0	0	0	39987000	20121000	19866000	0	0	0	18456	4178	17488	112755	152350	152350			1	
GFPFLFQHIR	0	Unmodified	1260.6768	0.67676237	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			80.181	73.044	3	2.8107E-20	40499	160513_QHF_FH_JSI10Kac_6	154.49	131.57			0.41316	0.41373	56.576	2	2	Median	0.33079	0.27732	NaN	1	1	Median	0.51603	0.61724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	489420000	368910000	120510000	174810000	141900000	32907000	314610000	227010000	87607000	0	0	0	0	0	0	18457	3198	17489	112756;112757	152351;152352	152352			2	
GFPFLLGAGLLLIPAVLIGMLEK	1	Unmodified	2381.416	0.41603315	4184	Q96NT5	SLC46A1	Proton-coupled folate transporter	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.25	101.53	3	4.6909E-13	60165	160513_QHF_FH_JSI10Kac_6	104.84	97.033			0.8602	1.0118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8602	1.0118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62230000	27924000	34306000	0	0	0	62230000	27924000	34306000	0	0	0	0	0	0	18458	4184	17490	112758	152353;152354;152355	152353			3	
GFPFWPAK	1	Unmodified	948.48577	0.48577371	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	79.363	78.577	2	0.0028402	68169	160511_QHF_FH_JSI12i_3	86.086	79.782			0.93173	0.83953	18.337	7	1	Median	1.2968	1.0838	NaN	1	0	Median	0.79649	0.9504	20.363	2	1	Median	0.82621	0.77314	11.652	2	0	Median	0.80562	0.82532	22.321	2	0	Median	158500000	76647000	81855000	15977000	7080700	8896100	33806000	16212000	17594000	49115000	26309000	22806000	59603000	27045000	32559000	18459	5410	17491	112759;112760;112761;112762;112763;112764;112765	152356;152357;152358;152359;152360;152361;152362;152363;152364;152365;152366	152365			11	
GFPGYMYTDLATIYER	0	Unmodified	1895.8764	0.87638598	1189	P21281;P15313	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									2	2	3	97.939	97.72	2;3	9.1449E-06	85768	160511_QHF_FH_JSI11i_2	149.38	133.63			0.92449	0.97535	13.706	6	3	Median	NaN	NaN	NaN	0	0	Median	0.80075	0.97373	5.5836	2	1	Median	1.1038	1.1164	24.45	2	0	Median	0.94317	1.0114	10.533	2	2	Median	100210000	54570000	45638000	0	0	0	28687000	16678000	12009000	34864000	17869000	16995000	36658000	20023000	16634000	18460	1189	17492	112766;112767;112768;112769;112770;112771;112772	152367;152368;152369;152370;152371;152372;152373;152374	152371			8	
GFPHVIYAR	0	Unmodified	1058.5661	0.56614929	2423	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	8.78	6.46			5						4	2	4	1	2	45.04	40.627	2;3	0.0046789	22354	160513_QHF_FH_JSI10Kac_6	37.191	31.894			0.9375	0.95203	16.416	7	0	Median	1.2227	1.0309	11.258	2	0	Median	0.81586	0.96046	15.906	2	0	Median	0.98871	0.89805	NaN	1	0	Median	0.82845	0.83275	27.356	2	0	Median	198520000	98437000	100090000	56434000	26743000	29691000	63241000	33211000	30030000	40578000	20522000	20055000	38271000	17961000	20310000	18461	2423	17493	112773;112774;112775;112776;112777;112778;112779;112780;112781	152375;152376;152377;152378;152379	152378			4	
GFPPSASLCLLDLVK	1	Unmodified	1615.8644	0.86436473	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	99.564	97.662	2;3	1.0647E-05	88364	160511_QHF_FH_JSI12i_3	119.76	101.96			0.97784	1.1655	29.555	3	1	Median	NaN	NaN	NaN	0	0	Median	0.97784	1.1655	NaN	1	0	Median	0.85689	0.80835	NaN	1	0	Median	1.4045	1.451	NaN	1	1	Median	423410000	199280000	224140000	0	0	0	76173000	41002000	35171000	162590000	92007000	70583000	184650000	66268000	118380000	18462	2094	17494	112782;112783;112784	152380;152381;152382;152383	152382			4	
GFPQPILSEDGSR	0	Unmodified	1401.6888	0.6888432	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	1	2	2	56.945	56.232	2	6.2881E-05	50841	160511_QHF_FH_JSI11i_1	115.18	94.305			1.0723	0.99987	34.475	6	5	Median	1.1781	0.96165	7.5501	2	2	Median	0.74256	0.87592	NaN	1	0	Median	1.5064	1.4759	57.111	2	2	Median	1.0243	1.053	NaN	1	1	Median	680310000	311690000	368630000	205550000	96845000	108700000	134130000	76402000	57732000	240550000	92788000	147760000	100080000	45650000	54429000	18463	5161	17495	112785;112786;112787;112788;112789;112790;112791	152384;152385;152386;152387;152388;152389;152390	152384			7	
GFPTDATLDDIK	1	Unmodified	1291.6296	0.62959699	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	65.499	62.877	2	4.4191E-23	56030	160511_QHF_FH_JSI9i_1	179.42	163.76			0.91855	0.95972	5.1854	5	0	Median	1.14	0.92817	NaN	1	0	Median	0.85734	1.0182	5.3525	2	0	Median	0.96356	0.93774	NaN	1	0	Median	0.91855	0.95972	NaN	1	0	Median	2498300000	1318600000	1179700000	621900000	305340000	316560000	597140000	353460000	243680000	698670000	344910000	353760000	580600000	314930000	265670000	18464	840	17496	112792;112793;112794;112795;112796	152391;152392;152393;152394;152395;152396;152397;152398;152399;152400;152401;152402;152403;152404;152405;152406;152407;152408;152409	152407			19	
GFPTIYFSPANK	1	Unmodified	1340.6765	0.6764876	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.55	8	8	7				3	5	7	10	9	10	9	76.961	72.311	2;3	6.9083E-78	64646	160511_QHF_FH_JSI12i_3	240.13	222.9			1.0005	0.97303	15.348	34	3	Median	1.0281	0.86342	11.252	9	3	Median	0.77686	0.95255	5.4267	7	0	Median	1.0408	0.98362	8.4356	9	0	Median	1.024	1.0815	12.371	9	0	Median	21101000000	10343000000	10758000000	3085100000	1478600000	1606500000	4510000000	2532000000	1978000000	7347500000	3470300000	3877300000	6158200000	2862400000	3295800000	18465	1344	17497	112797;112798;112799;112800;112801;112802;112803;112804;112805;112806;112807;112808;112809;112810;112811;112812;112813;112814;112815;112816;112817;112818;112819;112820;112821;112822;112823;112824;112825;112826;112827;112828;112829;112830;112831;112832;112833;112834	152410;152411;152412;152413;152414;152415;152416;152417;152418;152419;152420;152421;152422;152423;152424;152425;152426;152427;152428;152429;152430;152431;152432;152433;152434;152435;152436;152437;152438;152439;152440;152441;152442;152443;152444;152445;152446;152447;152448;152449;152450;152451;152452;152453;152454;152455;152456;152457;152458;152459;152460;152461;152462;152463;152464;152465;152466;152467;152468;152469;152470;152471;152472;152473;152474;152475;152476;152477;152478;152479;152480;152481;152482;152483;152484	152476			75	
GFPTIYFSPANKK	2	Unmodified	1468.7715	0.77145062	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	65.706	62.218	2;3	1.5651E-22	53432	160511_QHF_FH_JSI12i_3	147.33	140.29			0.84772	0.79432	14.494	12	0	Median	1.0807	0.85149	8.757	3	0	Median	0.60371	0.68626	0.66545	3	0	Median	0.78789	0.74072	19.029	3	0	Median	0.84851	1.0022	8.9582	3	0	Plateau	2416200000	1258900000	1157300000	630880000	311130000	319750000	502550000	294020000	208530000	693040000	367100000	325940000	589720000	286690000	303040000	18466	1344	17498	112835;112836;112837;112838;112839;112840;112841;112842;112843;112844;112845;112846	152485;152486;152487;152488;152489;152490;152491;152492;152493;152494;152495;152496;152497;152498;152499;152500;152501;152502;152503;152504;152505	152501			20	
GFPTWLK	1	Unmodified	847.45922	0.4592246	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	66.444	62.94	2	0.0035971	34568	160513_QHF_FH_JSI10Kac_6	99.919	74.921			0.96251	1.0068	14.41	12	0	Median	1.294	1.0321	11.287	3	0	Plateau	0.8495	0.98407	17.304	3	0	Plateau	1.1876	1.1213	18.392	3	0	Plateau	1.1712	1.22	14.614	3	0	Plateau	8882400000	4156500000	4725900000	1386100000	579520000	806540000	1862200000	986600000	875570000	2403200000	1170500000	1232700000	3231000000	1419900000	1811100000	18467	1073	17499	112847;112848;112849;112850;112851;112852;112853;112854;112855;112856;112857;112858	152506;152507;152508;152509;152510;152511;152512;152513;152514;152515;152516;152517;152518;152519;152520;152521;152522;152523;152524;152525;152526;152527;152528;152529;152530;152531;152532;152533	152533			28	
GFPTWLKLDK	2	Acetyl (K)	1245.6758	0.67575932	1073	P15311	EZR	Ezrin	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	84.574	75.369	2	3.7287E-06	41685	160513_QHF_FH_JSI11Kac_6	121.6	89.283			0.55431	0.52403	115.86	3	2	Median	0.55431	0.47027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54553	0.52403	NaN	1	0	Median	3.5044	3.685	NaN	1	1	Median	217790000	133130000	84662000	40520000	24670000	15850000	0	0	0	107170000	69506000	37666000	70096000	38949000	31146000	18468	1073	17500	112859;112860;112861;112862	152534;152535;152536;152537;152538	152535	915		5	
GFPVAHSIYGIPSVINSANYVYFLGLEK	1	Unmodified	3054.5855	0.58549434	722	O95749	GGPS1	Geranylgeranyl pyrophosphate synthase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.264	90.543	3	5.4433E-84	52414	160513_QHF_FH_JSI10Kac_6	204.31	179.1			0.93955	1.1098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93955	1.1098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129770000	63792000	65974000	0	0	0	129770000	63792000	65974000	0	0	0	0	0	0	18469	722	17501	112863	152539;152540	152539			2	
GFPVLLHYQTVSEPAVIK	1	Unmodified	1997.0986	0.098598418	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	2	2	82.466	77.659	3	6.524E-12	71857	160511_QHF_FH_JSI12i_3	143.28	139.18			0.88327	0.92741	19.172	6	0	Median	0.78778	0.66754	NaN	1	0	Median	0.72879	0.84388	NaN	1	0	Median	1.1417	1.0853	7.9215	2	0	Median	0.88327	0.92741	11.419	2	0	Median	669350000	342750000	326600000	97028000	46913000	50115000	70039000	39847000	30191000	236350000	115650000	120700000	265930000	140340000	125590000	18470	5610	17502	112864;112865;112866;112867;112868;112869	152541;152542;152543;152544;152545;152546;152547;152548;152549;152550	152548			10	
GFPVLSK	1	Unmodified	746.43268	0.4326755	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0.894	2	1	2								2	2	1	44.496	43.879	2	0.012734	37723	160511_QHF_FH_JSI11i_2	68.915	68.915			1.0662	1.0781	24.221	5	0	Median	NaN	NaN	NaN	0	0	Median	0.93821	1.0486	18.155	2	0	Median	1.0442	1.0286	6.6429	2	0	Median	1.6968	1.7057	NaN	1	0	Median	270160000	127330000	142830000	0	0	0	53553000	28810000	24743000	160080000	75244000	84837000	56529000	23279000	33251000	18471	197	17503	112870;112871;112872;112873;112874	152551;152552;152553;152554	152554			4	
GFPVLSKMHQR	1	Acetyl (K);Oxidation (M)	1356.6972	0.69723982	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		78.64	69.325	2	0.054905	37958	160513_QHF_FH_JSI11Kac_6	46.891	24.805			1.9548	1.9338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9548	1.9338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38268000	17291000	20978000	0	0	0	0	0	0	38268000	17291000	20978000	0	0	0	18472	197	17504	112875	152555	152555			1	
GFPWDEYK	1	Unmodified	1040.4603	0.46034682	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.938	64.037	2	0.0066274	55111	160511_QHF_FH_JSI12i_2	61.999	57.862			0.92675	1.0182	13.628	4	1	Median	1.1829	1.0177	NaN	1	1	Median	0.85916	1.0188	NaN	1	0	Median	0.83349	0.82503	NaN	1	0	Median	0.99965	1.1444	NaN	1	0	Median	242400000	125370000	117030000	44349000	22690000	21659000	49769000	28583000	21186000	82741000	39326000	43415000	65545000	34774000	30771000	18473	5442	17505	112876;112877;112878;112879	152556;152557;152558;152559;152560;152561	152557			6	
GFQALGDAADIR	0	Unmodified	1232.6149	0.61494998	781	P01033	TIMP1	Metalloproteinase inhibitor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	55.352	54.84	2	0.00022646	47456	160511_QHF_FH_JSI11i_2	94.297	78.635			1.3542	1.3242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3542	1.3242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49362000	23208000	26153000	0	0	0	0	0	0	49362000	23208000	26153000	0	0	0	18474	781	17506	112880;112881	152562;152563	152563			2	
GFQEDSEIR	0	Unmodified	1079.4884	0.48835248	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.304	22.904	2	0.0018561	19983	160511_QHF_FH_JSI10i_1	76.17	52.647			0.90844	0.99951	16.752	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94771	1.1252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8708	0.88785	NaN	1	1	Median	109650000	62960000	46693000	0	0	0	53397000	28274000	25124000	0	0	0	56257000	34687000	21570000	18475	4868	17507	112882;112883;112884	152564;152565;152566	152566			3	
GFQEVVTPNIFNSR	0	Unmodified	1606.8104	0.81035532	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			4								2	1	1	77.776	77.228	3	0.0019688	64628	160511_QHF_FH_JSI10i_3	40.237	35.523			0.97609	0.93318	26.72	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.57316	0.67122	NaN	1	1	Median	0.82691	0.77352	NaN	1	0	Median	1.0862	1.1258	NaN	1	0	Median	56164000	32234000	23930000	0	0	0	9666200	6217500	3448700	21823000	12621000	9202400	24674000	13396000	11279000	18476	1282	17508	112885;112886;112887;112888	152567;152568;152569	152569			2	
GFQGTTQTSHGSLMTNK	1	Unmodified	1793.8366	0.83664643	3629	Q8NDF8	PAPD5	Non-canonical poly(A) RNA polymerase PAPD5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				26.548	25.193	3	0.00010172	20424	160511_QHF_FH_JSI9i_3	69.729	51.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18477	3629	17509	112889	152570	152570			1	
GFQGVMK	1	Unmodified	765.38435	0.3843451	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	24.845	24.253	2	0.0098491	20050	160511_QHF_FH_JSI12i_3	77.374	71.335			0.81549	0.81939	11.244	6	0	Median	1.1626	1.0062	NaN	1	0	Median	0.66978	0.82042	NaN	1	0	Median	0.77107	0.75215	1.5073	2	0	Median	0.82088	0.85835	6.7472	2	0	Median	529170000	286650000	242520000	58431000	26682000	31749000	83243000	51232000	32011000	186870000	101400000	85464000	200630000	107330000	93301000	18478	919	17510	112890;112891;112892;112893;112894;112895	152571;152572;152573;152574;152575;152576	152575			6	
GFQKAMVK	2	Acetyl (K)	949.50552	0.50552287	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							2	2			2	2		43.419	33.346	2	0.0033223	17363	160513_QHF_FH_JSI10Kac_5	91.9	63.682			0.83446	0.98797	93.916	3	1	Median	NaN	NaN	NaN	0	0	Median	0.77569	0.91891	10.248	2	0	Median	4.7363	4.6518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25081000	11021000	14061000	0	0	0	19913000	10004000	9908800	5168400	1016400	4152000	0	0	0	18479	991	17511	112896;112897;112898;112899	152577;152578;152579;152580	152580	787		4	
GFQKAMVK	2	Acetyl (K);Oxidation (M)	965.50044	0.50043749	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15	0								3				2	1	31.79	22.284	2	0.015393	13463	160513_QHF_FH_JSI11Kac_5	56.122	26.973			0.98202	0.98994	1.4784	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0544	1.0003	NaN	1	0	Median	0.91464	0.97965	NaN	1	0	Median	4122900	1712800	2410100	0	0	0	0	0	0	2268200	848490	1419700	1854700	864320	990360	18480	991	17511	112900;112901;112902	152581;152582;152583	152581	787	573	3	
GFQQILAGEYDHLPEQAFYMVGPIEEAVAK	1	Unmodified	3349.6329	0.63291481	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							3	2	4	4	102.1	102.03	3;4	3.6024E-121	91071	160511_QHF_FH_JSI11i_3	255.36	240.54			0.91195	0.90224	12.354	13	2	Median	1.1064	0.94185	10.165	3	0	Plateau	0.7591	0.93513	1.5545	2	0	Median	0.90353	0.84927	6.6225	4	2	Median	0.92608	0.93284	18.939	4	0	Median	5132100000	2688900000	2443200000	556650000	265450000	291210000	546230000	307150000	239070000	1699600000	900610000	799030000	2329600000	1215700000	1113800000	18481	851	17512	112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915	152584;152585;152586;152587;152588;152589;152590;152591;152592;152593;152594;152595;152596;152597;152598;152599;152600;152601	152584			18	
GFQQISFVNSIATSK	1	Unmodified	1625.8413	0.8413211	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.64		2	5						8	4	5	3	3	78.467	75.024	2;3	2.3003E-88	39967	160513_QHF_FH_JSI10Kac_6	243.11	162.42			0.6696	0.70102	20.005	10	3	Median	0.849	0.72309	7.3122	4	2	Median	0.55119	0.67898	14.982	5	1	Median	1.126	1.0829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	643650000	387460000	256180000	153930000	79654000	74273000	312790000	217710000	95076000	176930000	90098000	86833000	0	0	0	18482	999	17513	112916;112917;112918;112919;112920;112921;112922;112923;112924;112925;112926;112927;112928;112929;112930	152602;152603;152604;152605;152606;152607;152608;152609;152610;152611;152612;152613;152614;152615;152616;152617;152618;152619;152620;152621;152622	152620			21	
GFQQISFVNSIATTK	1	Unmodified	1639.857	0.85697116	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							3	1	1	2	78.838	77.994	2	1.6303E-44	67900	160511_QHF_FH_JSI12i_3	182.08	157.23			1.1889	0.9972	29.807	5	2	Median	1.1889	0.9972	34.253	3	2	Median	0.69883	0.78216	NaN	1	0	Median	1.3116	1.2445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118560000	55836000	62722000	41688000	19203000	22485000	20127000	13652000	6475700	56742000	22981000	33761000	0	0	0	18483	2197	17514	112931;112932;112933;112934;112935;112936;112937	152623;152624;152625;152626;152627;152628;152629;152630;152631	152631			9	
GFQSQVK	1	Unmodified	792.413	0.41300269	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			11.278	10.752	2	0.011748	8653	160511_QHF_FH_JSI10i_2	60.788	20.685			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18484	305	17515	112938	152632	152632			1	
GFQTYVLR	0	Unmodified	982.52362	0.52361577	3197	Q709F0	ACAD11	Acyl-CoA dehydrogenase family member 11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.471	20.162	3	0.055367	16578	160511_QHF_FH_JSI11i_2	13.037	0			0.96394	0.94381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96394	0.94381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41763000	15716000	26047000	0	0	0	0	0	0	41763000	15716000	26047000	0	0	0	18485	3197	17516	112939	152633	152633			1	
GFSAEQIAR	0	Unmodified	977.49304	0.49304393	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	31.587	30.786	2	3.1741E-05	26016	160511_QHF_FH_JSI11i_2	101.64	79.512			0.74176	0.76238	17.596	5	0	Median	1.0931	0.96409	NaN	1	0	Median	0.58959	0.71516	9.0417	2	0	Median	0.74176	0.75302	NaN	1	0	Median	0.89906	1.0133	NaN	1	0	Median	564090000	313160000	250930000	102490000	49259000	53226000	188860000	111550000	77306000	179760000	104100000	75663000	92986000	48254000	44732000	18486	4641	17517	112940;112941;112942;112943;112944	152634;152635;152636;152637;152638;152639;152640;152641;152642	152639			9	
GFSAHLMK	1	Unmodified	889.44801	0.44800799	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	35.783	26.71	2;3	0.00056181	15032	160513_QHF_FH_JSI10Kac_6	79.474	70.611			1.0563	1.0912	14.834	6	2	Median	1.2339	1.0912	0.20625	2	1	Median	0.9371	1.1232	NaN	1	0	Median	0.99863	0.97899	25.14	2	1	Median	0.80623	0.87062	NaN	1	0	Median	112340000	53950000	58393000	23293000	10816000	12476000	42659000	21285000	21374000	31091000	14344000	16746000	15301000	7504600	7796400	18487	4997	17518	112945;112946;112947;112948;112949;112950;112951	152643;152644;152645;152646;152647;152648;152649;152650;152651	152650			9	
GFSAHLMK	1	Oxidation (M)	905.44292	0.44292261	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		25.362	16.66	3	0.02232	9824	160513_QHF_FH_JSI9Kac_6	31.952	22.171			0.89601	0.82147	19.379	2	0	Median	1.1213	0.94211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71599	0.71628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11374000	5609400	5764800	7078700	3174600	3904100	0	0	0	4295600	2434800	1860800	0	0	0	18488	4997	17518	112952;112953	152652	152652			1	
GFSAHWWNFR	0	Unmodified	1306.5996	0.59957468	5673	Q9Y5Q0	FADS3	Fatty acid desaturase 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.709	66.337	3	1.7296E-06	36434	160513_QHF_FH_JSI10Kac_6	106.16	92.727			0.7607	0.88695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7607	0.88695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80650000	47585000	33065000	0	0	0	80650000	47585000	33065000	0	0	0	0	0	0	18489	5673	17519	112954	152653	152653			1	
GFSDKLDFLEGDQK	2	Unmodified	1597.7624	0.76240208	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	67.344	66.752	2;3	1.1469E-06	59354	160511_QHF_FH_JSI11i_3	127.57	108.18			0.92924	0.95663	23.868	6	5	Median	NaN	NaN	NaN	0	0	Median	0.63426	0.74183	37.17	2	2	Median	1.0512	1.0058	16.784	2	1	Median	0.96554	0.98501	5.3407	2	2	Median	797220000	356380000	440850000	0	0	0	74995000	42960000	32035000	396450000	160220000	236230000	325780000	153190000	172580000	18490	4322	17520	112955;112956;112957;112958;112959;112960	152654;152655;152656;152657;152658;152659;152660;152661;152662;152663	152656			10	
GFSDSGGGPPAK	1	Unmodified	1075.4934	0.49343786	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	3	1	17.417	14.584	2	3.3761E-06	12236	160511_QHF_FH_JSI11i_1	154.85	136.12			0.90182	0.90465	58.985	6	1	Median	1.1104	0.91734	NaN	1	0	Median	0.73619	0.8574	NaN	1	0	Median	0.91953	0.89214	84.668	3	1	Median	0.88445	0.92867	NaN	1	0	Median	628550000	356550000	272000000	153850000	81661000	72185000	169270000	105890000	63384000	167710000	96384000	71328000	137720000	72617000	65105000	18491	4686	17521	112961;112962;112963;112964;112965;112966	152664;152665;152666;152667;152668;152669;152670;152671;152672	152665			9	
GFSEEHNTWEPEK	1	Unmodified	1588.6794	0.67940073	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.496		9	7							2	3	5	6	32.419	31.826	2;3	2.8088E-40	27828	160511_QHF_FH_JSI10i_2	174.84	130.53			1.2151	1.2665	45.991	12	3	Median	0.80049	0.6728	12.841	2	0	Median	0.5988	0.73694	11.726	2	1	Median	1.5286	1.5108	1.6669	3	0	Median	1.5385	1.5608	51.579	5	2	Median	1233500000	630420000	603090000	138300000	84933000	53372000	213730000	141770000	71960000	382490000	161990000	220500000	498980000	241720000	257260000	18492	1572	17522	112967;112968;112969;112970;112971;112972;112973;112974;112975;112976;112977;112978;112979;112980;112981;112982	152673;152674;152675;152676;152677;152678;152679;152680;152681;152682;152683;152684;152685;152686;152687;152688;152689;152690;152691;152692;152693;152694;152695;152696;152697;152698;152699;152700	152694			28	
GFSEGLWEIENNPTVK	1	Unmodified	1818.8788	0.87882882	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.26		9	6					3	1	4	6	5	4	79.494	76.959	2;3	1.6337E-290	67552	160511_QHF_FH_JSI12i_2	402.81	378.55			1.0148	1.0461	10.345	17	3	Median	1.0994	0.92126	8.5517	4	2	Median	0.85789	1.0539	8.3436	5	0	Median	1.0196	1.1408	11.145	5	1	Linear	0.94043	1.0622	6.9836	3	0	Median	6623200000	3123500000	3499700000	1847000000	881970000	965000000	1361000000	692980000	668020000	2063600000	894290000	1169300000	1351600000	654270000	697360000	18493	1758	17523	112983;112984;112985;112986;112987;112988;112989;112990;112991;112992;112993;112994;112995;112996;112997;112998;112999;113000;113001	152701;152702;152703;152704;152705;152706;152707;152708;152709;152710;152711;152712;152713;152714;152715;152716;152717;152718;152719;152720;152721;152722;152723;152724;152725;152726;152727;152728;152729;152730;152731	152706			31	
GFSESER	0	Unmodified	810.3508	0.35079637	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	8.55	8.1721	2	0.0010716	5883	160511_QHF_FH_JSI11i_2	124.89	89.782			1.1284	1.1429	12.168	5	0	Median	1.335	1.1429	NaN	1	0	Median	0.70782	0.88524	NaN	1	0	Median	1.1509	1.1477	1.2362	2	0	Median	1.0633	1.195	NaN	1	0	Median	1944100000	994840000	949230000	337580000	147860000	189710000	294980000	183040000	111940000	853090000	427160000	425930000	458430000	236780000	221650000	18494	3218	17524	113002;113003;113004;113005;113006;113007	152732;152733;152734;152735;152736;152737;152738;152739;152740	152737			9	
GFSFLFSHFK	1	Unmodified	1215.6077	0.60767975	3047	Q6GYQ0	RALGAPA1	Ral GTPase-activating protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	2	2	2	3	82.246	74.543	2;3	3.0405E-34	39664	160513_QHF_FH_JSI9Kac_6	171.85	142.9			1.0076	1.0148	19.848	8	1	Median	0.90426	0.78143	18.99	2	0	Median	0.87553	1.0426	17.48	2	1	Median	1.1746	1.1303	3.3234	2	0	Median	1.0007	1.0776	20.426	2	0	Median	1086000000	605630000	480360000	402120000	230520000	171590000	325510000	195120000	130390000	240970000	125610000	115360000	117400000	54380000	63019000	18495	3047	17525	113008;113009;113010;113011;113012;113013;113014;113015;113016	152741;152742;152743;152744;152745;152746;152747;152748;152749;152750;152751;152752;152753;152754;152755	152746			15	
GFSFLFSHFKK	2	Unmodified	1343.7026	0.70264277	3047	Q6GYQ0	RALGAPA1	Ral GTPase-activating protein subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	75.986	67.519	3;4	1.4173E-05	37051	160513_QHF_FH_JSI10Kac_6	96.015	79.761			0.76067	0.78883	47.178	4	1	Median	0.74691	0.64059	NaN	1	0	Median	1.5735	1.8487	NaN	1	1	Median	0.77469	0.76115	NaN	1	0	Median	0.74312	0.81753	NaN	1	0	Median	78237000	40145000	38093000	22643000	14371000	8272100	29419000	12518000	16902000	12654000	6705900	5948200	13521000	6550700	6970800	18496	3047	17526	113017;113018;113019;113020;113021	152756;152757;152758;152759;152760	152760			5	
GFSFVATGLMEDDGKPR	1	Unmodified	1825.8669	0.86688392	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.714	72.913	3	3.8069E-11	64884	160511_QHF_FH_JSI11i_3	114.52	94.915			0.98506	0.94544	13.292	4	1	Median	1.3155	1.0867	NaN	1	0	Median	0.69938	0.81523	NaN	1	1	Median	1.1033	1.0205	NaN	1	0	Median	0.87948	0.8759	NaN	1	0	Median	217890000	116810000	101080000	19719000	8546500	11172000	32887000	17078000	15809000	135320000	73558000	61766000	29961000	17631000	12329000	18497	2669	17527	113022;113023;113024;113025	152761;152762;152763;152764;152765;152766	152763			5	
GFSGAGEK	1	Unmodified	751.35007	0.35006808	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS				2	0		1								1				8.0253	7.5491	2	0.016382	5414	160511_QHF_FH_JSI9i_2	48.036	32.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18498	1685;31;191	17528	113026	152767	152767			1	
GFSGGMK	1	Unmodified	682.31085	0.31084581	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	0				By MS/MS	3	0			1										1	10.199	10.294	2	0.023084	7618	160511_QHF_FH_JSI12i_3	50.12	30.273			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18499	2348	17529	113027	152768	152768			1	
GFSIGIGDVTPGQGLLK	1	Unmodified	1657.9039	0.90392136	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	93.434	93.423	2	4.7904E-11	83336	160511_QHF_FH_JSI11i_3	109.24	99.803			1.1415	1.1351	11.717	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2765	1.2331	NaN	1	1	Median	1.0207	1.0448	NaN	1	0	Median	34543000	13377000	21166000	0	0	0	0	0	0	8715900	3434500	5281400	25827000	9942900	15884000	18500	207	17530	113028;113029;113030	152769;152770;152771;152772	152770			4	
GFSIPECQK	1	Unmodified	1064.4961	0.4960804	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.3	5.19			1				2				1	1	1	48.605	38.206	2	0.00013355	22037	160513_QHF_FH_JSI12Kac_4	107.66	77.41			0.85833	0.88013	27.349	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0983	1.0679	NaN	1	1	Median	0.6708	0.72537	NaN	1	0	Median	14723000	7344900	7377800	0	0	0	0	0	0	10035000	4100100	5935300	4687300	3244800	1442600	18501	517	17531	113031;113032;113033	152773;152774;152775	152775			3	
GFSLEELR	0	Unmodified	949.4869	0.48689592	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.3	4	8	5				1	5	3	6	7	6	7	62.518	58.364	1;2	3.9037E-30	51233	160511_QHF_FH_JSI9i_2	203.57	153.98			1.1066	0.84633	13.769	25	6	Linear	1.4153	1.1883	9.7115	6	1	Median	0.9913	1.1848	20.975	6	3	Median	1.0745	1.097	8.9366	6	1	Plateau	1.0501	1.0988	6.0357	7	1	Median	12775000000	5883000000	6892200000	2337800000	963900000	1373900000	3221300000	1533900000	1687400000	4503800000	2146000000	2357800000	2712300000	1239200000	1473100000	18502	1275	17532	113034;113035;113036;113037;113038;113039;113040;113041;113042;113043;113044;113045;113046;113047;113048;113049;113050;113051;113052;113053;113054;113055;113056;113057;113058;113059	152776;152777;152778;152779;152780;152781;152782;152783;152784;152785;152786;152787;152788;152789;152790;152791;152792;152793;152794;152795;152796;152797;152798;152799;152800;152801;152802;152803;152804;152805;152806;152807;152808;152809;152810;152811	152795			35	
GFSLEELRVAGIHK	1	Unmodified	1554.8518	0.85182621	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			67.829	66.349	4	0.020519	55522	160511_QHF_FH_JSI10i_3	38.189	28.401			0.11794	0.1435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11794	0.1435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6936700	5874000	1062700	0	0	0	6936700	5874000	1062700	0	0	0	0	0	0	18503	1275	17533	113060	152812	152812			1	
GFSLLATEDK	1	Unmodified	1079.5499	0.5498901	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.668	2	6	3							4	3	3	1	56.194	55.231	2	6.6102E-25	48611	160511_QHF_FH_JSI9i_2	169.09	149.99			1.5509	1.8453	86.468	8	7	Median	0.99462	0.8043	42.11	2	2	Median	1.5868	1.8726	58.839	3	3	Median	4.7805	4.7871	70.933	2	2	Median	0.89077	1.003	NaN	1	0	Median	3916900000	989970000	2926900000	468130000	150630000	317500000	1340000000	278020000	1062000000	1634900000	317960000	1317000000	473830000	243360000	230470000	18504	939	17534	113061;113062;113063;113064;113065;113066;113067;113068;113069;113070;113071	152813;152814;152815;152816;152817;152818;152819;152820;152821;152822;152823;152824;152825	152822			13	
GFSLSDVPQAEISGEHLR	0	Unmodified	1940.9592	0.9592044	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	70.542	70.158	2;3	7.6892E-12	60788	160511_QHF_FH_JSI12i_3	106.93	97.172			1.0124	1.0203	22.172	3	2	Median	0.97464	0.84001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3954	1.3074	NaN	1	1	Median	1.0124	1.0203	NaN	1	1	Median	349590000	169390000	180200000	43301000	24917000	18384000	0	0	0	133770000	54348000	79418000	172530000	90124000	82401000	18505	1419	17535	113072;113073;113074;113075	152826;152827;152828;152829	152829			3	
GFSMPGFLFK	1	Unmodified	1129.563	0.56303775	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	96.103	95.791	2	4.7574E-05	85027	160511_QHF_FH_JSI11i_3	93.429	68.506			1.0445	0.96038	6.5032	4	1	Median	1.2103	0.9867	NaN	1	1	Median	0.7581	0.89169	NaN	1	0	Median	0.98883	0.93476	NaN	1	0	Median	1.1033	1.0358	NaN	1	0	Median	94627000	51079000	43548000	20237000	9074900	11162000	19362000	11971000	7390900	23535000	13583000	9952700	31493000	16451000	15042000	18506	591	17536	113076;113077;113078;113079	152830;152831;152832	152830			3	
GFSNLKK	2	Unmodified	792.44939	0.4493882	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			11.244	10.558	2	0.010341	8110	160511_QHF_FH_JSI9i_3	98.997	43.556			5.354	0.89123	96.942	3	3	Plateau	2.1963	1.7601	125.33	2	2	Median	0.73576	0.89123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	353930000	124500000	229430000	274620000	73932000	200680000	79317000	50572000	28745000	0	0	0	0	0	0	18507	1004	17537	113080;113081;113082	152833;152834;152835	152835			3	
GFSPQHK	1	Unmodified	799.39769	0.39768698	2264	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.7614	5.7614	2	0.020299	3532	160511_QHF_FH_JSI11i_3	60.788	48.404			4.9167	4.6973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9167	4.6973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	425890000	56497000	369400000	0	0	0	0	0	0	425890000	56497000	369400000	0	0	0	18508	2264	17538	113083	152836	152836			1	
GFSSGSAVVSGGSR	0	Unmodified	1253.6	0.60002819	63	CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT2	Keratin, type II cytoskeletal 2 epidermal	yes	no	0	0	0	0	By MS/MS				15	0								1		1				32.011	22.543	2	0.021816	13062	160513_QHF_FH_JSI9Kac_5	45.879	23.139		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18509	63	17539	113084	152837	152837			1	
GFSSTFTGER	0	Unmodified	1087.4934	0.49343786	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.3		2	3					3	1	1	2	4	2	35.838	31.134	2	5.0961E-11	26381	160511_QHF_FH_JSI12i_3	147.51	127.72			1.3144	1.2652	51.351	9	2	Median	1.4491	1.215	NaN	1	0	Median	2.0331	2.4326	75.514	2	1	Median	1.1104	1.0828	35.304	4	1	Median	1.1381	1.2166	54.537	2	0	Median	620220000	258120000	362100000	3572700	1251400	2321300	233700000	52545000	181160000	246920000	130170000	116750000	136030000	74157000	61871000	18510	4065	17540	113085;113086;113087;113088;113089;113090;113091;113092;113093	152838;152839;152840;152841;152842;152843;152844;152845;152846;152847;152848;152849	152849			12	
GFSTWLK	1	Unmodified	837.43849	0.43848916	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	2	3	3	57.486	53.613	2	0.00021507	47261	160511_QHF_FH_JSI11i_3	138.07	111.97			0.97006	0.89563	10.037	12	0	Median	1.0406	0.87083	5.8739	4	0	Median	0.84106	0.99665	9.3631	2	0	Median	1.1113	1.0684	14.32	3	0	Plateau	0.8815	0.9429	10.209	3	0	Median	14308000000	6912700000	7394800000	2853500000	1230200000	1623300000	3225300000	1424200000	1801100000	3360300000	1780200000	1580200000	4868400000	2478100000	2390200000	18511	1270	17541	113094;113095;113096;113097;113098;113099;113100;113101;113102;113103;113104;113105	152850;152851;152852;152853;152854;152855;152856;152857;152858;152859;152860;152861;152862;152863;152864;152865;152866;152867;152868;152869;152870;152871;152872;152873;152874	152853			25	
GFSTWLKLNK	2	Acetyl (K)	1234.671	0.67100829	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	79.981	70.603	2	1.2514E-06	38743	160513_QHF_FH_JSI11Kac_6	129.38	108.48			0.51507	0.53381	43.803	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4	0.39163	NaN	1	0	Median	0.66325	0.72762	NaN	1	0	Median	57766000	39694000	18072000	0	0	0	0	0	0	44560000	31775000	12785000	13206000	7919100	5286600	18512	1270	17542	113106;113107	152875;152876	152876	1175		2	
GFSVIGWYHSHPAFDPNPSLR	0	Unmodified	2383.1498	0.14979914	2991	Q5VVJ2	MYSM1	Histone H2A deubiquitinase MYSM1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.176	73.428	4	4.8295E-29	40126	160513_QHF_FH_JSI10Kac_6	156.67	141.74			0.83148	0.99848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83148	0.99848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	263600000	144260000	119340000	0	0	0	263600000	144260000	119340000	0	0	0	0	0	0	18513	2991	17543	113108	152877	152877			1	
GFSVVADTPELQR	0	Unmodified	1417.7201	0.72014333	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	3.43	4	5	4					1		4	4	3	3	60.326	59.524	2	6.9015E-99	51013	160511_QHF_FH_JSI12i_2	298.77	264.05			1.0284	1.1379	27.775	13	7	Median	1.3812	1.1379	21.694	3	2	Plateau	0.96473	1.1507	11.51	4	3	Median	1.1302	1.1603	55.364	3	1	Median	1.0296	1.1438	7.1078	3	1	Median	3389600000	1659100000	1730500000	588230000	253730000	334510000	1126500000	572440000	554090000	833220000	425060000	408160000	841610000	407830000	433780000	18514	2579	17544	113109;113110;113111;113112;113113;113114;113115;113116;113117;113118;113119;113120;113121;113122	152878;152879;152880;152881;152882;152883;152884;152885;152886;152887;152888;152889;152890;152891;152892;152893;152894;152895;152896	152881			19	
GFSYLVTGVTTVGVAYAAK	1	Unmodified	1903.0091	0.0091147084	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	2.16				1	1				1		1	1	1	88.326	79.576	3	8.4825E-08	34532	160513_QHF_FH_JSI12Kac_2	97.579	86.317			0.83063	0.85643	26.062	3	1	Median	NaN	NaN	NaN	0	0	Median	0.75193	0.85643	NaN	1	1	Median	0.83063	0.81471	NaN	1	0	Median	1.2533	1.3091	NaN	1	0	Median	51616000	27668000	23948000	0	0	0	1477500	1028500	448970	42420000	23354000	19065000	7719200	3285400	4433800	18515	1611	17545	113123;113124;113125	152897;152898;152899	152899			2	
GFTAAGILSAHK	1	Unmodified	1171.635	0.63495714	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.51		1	8						7	4	5	4	3	53.233	48.71	2;3	3.5683E-31	41354	160511_QHF_FH_JSI12i_3	185.08	160.16			0.91726	0.9186	18.001	16	1	Median	1.2104	0.99696	19.711	4	0	Median	0.761	0.89827	13.138	5	1	Median	1.144	1.0771	21.881	4	0	Linear	0.98666	1.0116	9.6557	3	0	Median	4745800000	2405700000	2340100000	1270000000	598350000	671620000	1118000000	593830000	524130000	1163100000	543290000	619840000	1194700000	670240000	524460000	18516	4000	17546	113126;113127;113128;113129;113130;113131;113132;113133;113134;113135;113136;113137;113138;113139;113140;113141	152900;152901;152902;152903;152904;152905;152906;152907;152908;152909;152910;152911;152912;152913;152914;152915;152916;152917;152918;152919;152920;152921;152922;152923;152924;152925;152926;152927;152928;152929;152930;152931;152932;152933;152934	152930			35	
GFTAAGVLAAHK	1	Unmodified	1141.6244	0.62439245	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	46.328	41.25	2;3	5.8683E-65	34773	160511_QHF_FH_JSI12i_3	233.46	158.08			0.87219	0.91666	14.178	16	0	Median	1.2758	1.0421	9.2978	4	0	Median	0.79021	0.91569	7.3098	4	0	Median	0.87234	0.80785	2.9579	4	0	Linear	1.0056	1.0531	16.995	4	0	Median	8040500000	3706200000	4334400000	1344000000	525270000	818690000	2118100000	933630000	1184500000	1800600000	843530000	957120000	2777800000	1403700000	1374100000	18517	1394	17547	113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152;113153;113154;113155;113156;113157	152935;152936;152937;152938;152939;152940;152941;152942;152943;152944;152945;152946;152947;152948;152949;152950;152951;152952;152953;152954;152955;152956;152957;152958;152959;152960;152961;152962;152963;152964;152965;152966;152967	152962			33	
GFTESFGAANISQAAR	0	Unmodified	1625.7798	0.77978347	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.199	58.199	2	1.5947E-16	50070	160511_QHF_FH_JSI12i_3	146.36	129.33			1.2654	1.209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2654	1.209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10758000	6471600	4286800	0	0	0	0	0	0	10758000	6471600	4286800	0	0	0	18518	2305	17548	113158;113159	152968;152969	152969			2	
GFTFWQWFDGVLDLTK	1	Unmodified	1958.9567	0.95668521	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.63	95.912	2	0.001547	56649	160513_QHF_FH_JSI10Kac_6	130.1	112.89			1.5249	1.8076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5249	1.8076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136610000	61216000	75390000	0	0	0	136610000	61216000	75390000	0	0	0	0	0	0	18519	1529	17549	113160	152970	152970			1	
GFTGIDSDYEKPETPER	1	Unmodified	1939.88	0.87995103	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	45.124	44.459	2;3	7.971E-23	39113	160511_QHF_FH_JSI10i_2	136.24	114.05			1.1257	1.0119	13.155	11	1	Median	1.3795	1.1652	20.258	2	1	Median	0.83534	1.0389	NaN	1	0	Median	1.0602	1.0107	7.2997	4	0	Median	1.034	1.0937	17.879	4	0	Median	1648000000	822870000	825120000	269890000	125760000	144130000	217420000	130250000	87166000	633030000	304440000	328590000	527660000	262420000	265240000	18520	678	17550	113161;113162;113163;113164;113165;113166;113167;113168;113169;113170;113171;113172	152971;152972;152973;152974;152975;152976;152977;152978;152979;152980;152981;152982;152983;152984;152985;152986;152987;152988;152989;152990;152991	152987			21	
GFTGIDSEYEKPEAPELVLK	2	Unmodified	2221.1154	0.11543027	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	76.353	75.618	3	1.305E-06	66409	160511_QHF_FH_JSI11i_2	92.897	70.584			0.92927	0.95696	12.813	4	0	Median	NaN	NaN	NaN	0	0	Median	0.656	0.78942	NaN	1	0	Median	1.0446	1.0127	8.5007	2	0	Median	0.89261	0.96034	NaN	1	0	Median	331620000	192770000	138850000	0	0	0	74029000	46994000	27035000	175880000	94114000	81768000	81710000	51663000	30046000	18521	315	17551	113173;113174;113175;113176	152992;152993;152994	152994			3	
GFTIPEAFR	0	Unmodified	1036.5342	0.53418046	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.91	3	7	4					3	2	4	6	4	5	72.301	68.662	2	2.6542E-15	61280	160511_QHF_FH_JSI9i_2	145.63	67.959			0.98418	0.99857	14.909	16	2	Median	1.1954	1.0111	7.6426	3	1	Median	0.72385	0.84764	7.6789	4	1	Median	1.0273	1.0065	10.068	4	0	Median	0.94494	1.0639	18.766	5	0	Median	9329400000	4509500000	4819900000	1165600000	524530000	641120000	1745000000	963620000	781420000	3608700000	1727700000	1881000000	2810000000	1293700000	1516400000	18522	119	17552	113177;113178;113179;113180;113181;113182;113183;113184;113185;113186;113187;113188;113189;113190;113191;113192;113193;113194;113195	152995;152996;152997;152998;152999;153000;153001;153002;153003;153004;153005;153006;153007;153008;153009;153010;153011;153012;153013;153014;153015;153016;153017;153018;153019;153020;153021;153022	153009			28	
GFTLNDAANSR	0	Unmodified	1164.5523	0.55234972	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.18	4	4	2				3	3		3	4	4	5	37.815	33.659	2	3.4436E-59	29461	160511_QHF_FH_JSI9i_2	225.87	202.8			0.99712	1.0166	8.472	16	1	Median	1.212	0.9922	4.3472	3	0	Median	0.85786	1.0676	6.811	4	0	Linear	1.0591	1.0449	4.3104	4	0	Median	0.94402	1.0229	13.186	5	1	Median	3542200000	1756600000	1785600000	609380000	247060000	362320000	986090000	542450000	443640000	1304100000	638580000	665560000	642570000	328520000	314050000	18523	1544	17553	113196;113197;113198;113199;113200;113201;113202;113203;113204;113205;113206;113207;113208;113209;113210;113211	153023;153024;153025;153026;153027;153028;153029;153030;153031;153032;153033;153034;153035;153036;153037;153038;153039;153040;153041;153042;153043;153044;153045;153046;153047;153048;153049	153038			27	
GFTLVGMK	1	Unmodified	851.45751	0.45751004	161	O00746	NME4	Nucleoside diphosphate kinase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				67.331	65.841	2	0.012404	54036	160511_QHF_FH_JSI9i_3	52.683	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18524	161	17554	113212	153050	153050			1	
GFTLWAAEPGAAR	0	Unmodified	1345.6779	0.67788459	2406	Q13424	SNTA1	Alpha-1-syntrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			70.918	69.454	2	3.4013E-05	58244	160511_QHF_FH_JSI10i_3	81.017	36.707			1.4843	1.7354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4843	1.7354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9824500	3892700	5931900	0	0	0	9824500	3892700	5931900	0	0	0	0	0	0	18525	2406	17555	113213;113214;113215	153051;153052;153053;153054	153053			4	
GFTPIPGTIEMLHPWNNEGAPPEDK	1	Unmodified	2746.3061	0.30610137	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	93.953	93.799	3;4	1.1843E-10	83558	160511_QHF_FH_JSI11i_3	105.16	98.044			0.85007	0.84883	39.985	6	4	Median	0.4644	0.40001	NaN	1	1	Median	0.53012	0.64843	NaN	1	1	Median	1.185	1.0964	19.009	3	1	Median	0.83756	0.86172	NaN	1	1	Median	297080000	119210000	177870000	19859000	11809000	8050700	44557000	19686000	24870000	157610000	57199000	100410000	75053000	30520000	44532000	18526	2493	17556	113216;113217;113218;113219;113220;113221	153055;153056;153057;153058;153059;153060;153061;153062;153063;153064;153065;153066	153059			12	
GFTPMTVPDLLR	0	Unmodified	1345.7064	0.70640752	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.779	91.292	2	0.021621	80304	160511_QHF_FH_JSI11i_2	49.3	31.076			0.2833	0.2805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2833	0.2805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44497000	33336000	11162000	0	0	0	0	0	0	44497000	33336000	11162000	0	0	0	18527	4889	17557	113222	153067	153067			1	
GFTPVAFAMLGVTTVR	0	Unmodified	1665.8912	0.89124818	3070	Q6NTF9	RHBDD2	Rhomboid domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		94.484	85.092	3	0.031089	48062	160513_QHF_FH_JSI11Kac_6	44.005	33.061			0.81636	0.78607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81636	0.78607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66656000	38005000	28650000	0	0	0	0	0	0	66656000	38005000	28650000	0	0	0	18528	3070	17558	113223	153068	153068			0	
GFTPYYAR	0	Unmodified	973.46577	0.46576654	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	4	4	3	2	38.375	34.965	2	5.3388E-05	30531	160511_QHF_FH_JSI11i_3	135.35	108.75			0.91909	0.92266	29.961	13	5	Median	1.1385	0.95386	19.429	4	2	Median	0.97907	1.1634	43.109	4	2	Median	0.93715	0.89297	12.916	3	1	Plateau	0.78246	0.82971	15.017	2	0	Median	1294300000	633340000	660970000	252290000	105520000	146770000	421110000	219230000	201880000	322360000	151610000	170750000	298550000	156990000	141560000	18529	2198	17559	113224;113225;113226;113227;113228;113229;113230;113231;113232;113233;113234;113235;113236	153069;153070;153071;153072;153073;153074;153075;153076;153077;153078;153079;153080;153081;153082;153083;153084;153085	153070			17	
GFTSASTQEMTVHLLSK	1	Unmodified	1835.9087	0.90874874	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.108	64.818	3	4.841E-06	55879	160511_QHF_FH_JSI12i_3	98.508	87.229			0.97114	0.96673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97114	0.96673	NaN	1	1	Median	60692000	35423000	25268000	0	0	0	0	0	0	0	0	0	60692000	35423000	25268000	18530	625	17560	113237	153086	153086			1	
GFVAGATNILFR	0	Unmodified	1264.6928	0.69280637	3589	Q8NBF6	AVL9	Late secretory pathway protein AVL9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		7.33	6.13			4						2	3	2	1		79.8	75.382	2	4.5937E-05	38756	160513_QHF_FH_JSI9Kac_6	110.31	72.834			1.1169	0.96081	26.229	3	0	Median	1.3139	1.1266	22.517	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80773	0.78522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57049000	23004000	34046000	33601000	10546000	23055000	1905900	0	1905900	21543000	12458000	9084500	0	0	0	18531	3589	17561	113238;113239;113240;113241;113242;113243	153087;153088;153089;153090;153091	153091			5	
GFVANSFYSGLTPTEFFFHTMAGR	0	Oxidation (M)	2699.2479	0.2478582	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	93.18	83.738	3	1.4301E-08	45275	160513_QHF_FH_JSI12Kac_6	124.31	114.93			1.7029	1.8141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7029	1.8141	NaN	1	1	Median	40385000	12067000	28318000	0	0	0	0	0	0	0	0	0	40385000	12067000	28318000	18532	207	17562	113244	153092	153092		85	1	
GFVANSFYSGLTPTEFFFHTMAGR	0	Unmodified	2683.2529	0.25294358	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.845	90.124	3	2.9541E-05	52061	160513_QHF_FH_JSI10Kac_6	91.813	81.37			0.71964	0.8574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71964	0.8574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	210630000	132620000	78003000	0	0	0	210630000	132620000	78003000	0	0	0	0	0	0	18533	207	17562	113245	153093	153093			1	
GFVDDIIQPSSTR	0	Unmodified	1433.7151	0.71505795	830	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.838	62.316	2	0.00058479	54241	160511_QHF_FH_JSI11i_2	68.536	54.727			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18534	830	17563	113246	153094	153094			1	
GFVDLVIK	1	Unmodified	889.5273	0.52730417	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.55		6	5					2		2	3	3	5	72.836	70.539	1;2	0.00012853	61156	160511_QHF_FH_JSI12i_2	126.67	78.164			1.0858	1.1804	61.944	13	2	Median	1.244	1.0442	19.84	2	0	Median	0.8332	0.97422	114.73	3	1	Plateau	0.97589	0.98289	15.962	3	0	Median	1.1812	1.2105	47.397	5	1	Median	1653700000	808390000	845270000	191310000	95302000	96003000	272640000	136510000	136130000	458730000	226580000	232150000	730980000	350000000	380980000	18535	764	17564	113247;113248;113249;113250;113251;113252;113253;113254;113255;113256;113257;113258;113259	153095;153096;153097;153098;153099;153100;153101;153102;153103;153104;153105;153106;153107;153108;153109;153110;153111;153112;153113;153114;153115;153116;153117;153118;153119;153120;153121;153122;153123	153098			27	
GFVEFAAKPPAR	1	Unmodified	1288.6928	0.69280637	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			46.413	44.827	3	8.1441E-05	36649	160511_QHF_FH_JSI9i_3	80.979	71.547			0.62867	0.60308	2.6991	2	0	Median	0.76172	0.6147	NaN	1	0	Median	0.51887	0.59167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139960000	78950000	61006000	91752000	50004000	41748000	48204000	28946000	19258000	0	0	0	0	0	0	18536	3809	17565	113260;113261	153124;153125	153124			2	
GFVEIQTPK	1	Unmodified	1017.5495	0.54949617	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	5.11	6	2					2			3	2	2	3	49.102	46.085	2	5.2763E-06	42043	160511_QHF_FH_JSI12i_1	128.69	102.95			1.0325	1.1854	10.038	9	4	Median	1.4957	1.2518	1.223	2	1	Median	1.0229	1.2191	3.9596	2	2	Median	1.0993	1.0767	19.241	2	0	Median	1.0325	1.067	4.3393	3	1	Plateau	1333600000	600420000	733150000	220480000	72924000	147550000	525020000	251990000	273030000	254010000	117650000	136360000	334060000	157850000	176210000	18537	1064	17566	113262;113263;113264;113265;113266;113267;113268;113269;113270;113271	153126;153127;153128;153129;153130;153131;153132;153133;153134;153135;153136;153137	153130			12	
GFVEPDHYVVVGAQR	0	Unmodified	1671.8369	0.83690442	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.57		8	5					4	6	3	6	7	7	57.827	53.268	2;3	1.7826E-53	27683	160513_QHF_FH_JSI12Kac_6	170.52	150.14			1.0249	1.0324	8.0469	22	3	Median	1.1472	0.94911	11.903	3	0	Plateau	0.83066	1.0231	6.5207	5	2	Median	1.0676	1.0109	2.4786	7	0	Median	1.0275	1.065	11.478	7	1	Median	8709200000	4156700000	4552500000	805120000	378500000	426620000	1596000000	804930000	791110000	3417400000	1603900000	1813500000	2890600000	1369400000	1521200000	18538	793	17567	113272;113273;113274;113275;113276;113277;113278;113279;113280;113281;113282;113283;113284;113285;113286;113287;113288;113289;113290;113291;113292;113293;113294	153138;153139;153140;153141;153142;153143;153144;153145;153146;153147;153148;153149;153150;153151;153152;153153;153154;153155;153156;153157;153158;153159;153160;153161;153162;153163;153164;153165;153166;153167;153168;153169;153170;153171;153172;153173;153174;153175;153176;153177;153178;153179;153180;153181;153182;153183;153184;153185;153186	153183			49	
GFVFITFK	1	Unmodified	957.53239	0.53238955	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.15	5.6		4	7	3	2	4		3	4	5	6	8	8	85.528	80.567	1;2	2.2519E-07	41091	160513_QHF_FH_JSI9Kac_6	144.83	124.28			0.95072	0.94461	26.145	24	3	Median	1.143	0.91916	6.5618	5	0	Median	0.89277	0.94414	13.295	4	0	Linear	0.87826	0.88333	18.584	7	1	Median	0.90159	0.93544	39.016	8	2	Median	18214000000	8241700000	9972300000	4698700000	1964600000	2734100000	5321800000	2342600000	2979200000	5516700000	2672200000	2844500000	2676700000	1262300000	1414500000	18539	4308	17568	113295;113296;113297;113298;113299;113300;113301;113302;113303;113304;113305;113306;113307;113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321	153187;153188;153189;153190;153191;153192;153193;153194;153195;153196;153197;153198;153199;153200;153201;153202;153203;153204;153205;153206;153207;153208;153209;153210;153211;153212;153213;153214;153215;153216;153217;153218;153219;153220;153221;153222;153223;153224;153225;153226;153227;153228;153229;153230;153231;153232;153233;153234;153235;153236	153226			49	
GFVFITFKEEEPVK	2	Unmodified	1668.8763	0.87630962	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.4			7						10	4	5	4	4	79.266	74.132	2;3	1.6662E-35	37561	160513_QHF_FH_JSI12Kac_6	192.05	167.2			0.92835	0.91432	29.524	17	5	Median	1.1792	0.98861	8.9168	4	1	Median	0.80072	0.90597	47.085	5	1	Median	0.97893	0.92483	34.772	4	1	Median	0.83725	0.86453	12.373	4	2	Median	2143800000	1227100000	916770000	326000000	151760000	174240000	949240000	592930000	356310000	458260000	244520000	213740000	410340000	237850000	172480000	18540	4308	17569	113322;113323;113324;113325;113326;113327;113328;113329;113330;113331;113332;113333;113334;113335;113336;113337;113338	153237;153238;153239;153240;153241;153242;153243;153244;153245;153246;153247;153248;153249;153250;153251;153252;153253;153254;153255;153256;153257;153258	153252			22	
GFVFITFKEEEPVKK	3	Unmodified	1796.9713	0.97127264	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	2	2		1	71.748	66.804	3;4	0.00074625	55698	160511_QHF_FH_JSI9i_3	79.81	70.249			0.47303	0.6521	15.39	4	4	Linear	0.80849	0.67425	NaN	1	1	Median	0.60729	0.71321	24.658	2	2	Median	NaN	NaN	NaN	0	0	Median	0.58771	0.63067	NaN	1	1	Median	449640000	276690000	172940000	35050000	18924000	16126000	358180000	219830000	138350000	0	0	0	56407000	37942000	18465000	18541	4308	17570	113339;113340;113341;113342;113343	153259;153260;153261;153262;153263	153260			5	
GFVFSLIK	1	Unmodified	909.53239	0.53238955	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	3	1	2	83.178	78.558	2	0.00051675	40843	160513_QHF_FH_JSI11Kac_6	111.65	91.366			0.8987	0.88869	10.681	8	4	Median	1.0416	0.87506	2.6617	2	0	Median	0.87469	1.0011	8.8921	3	2	Median	0.93369	0.90247	NaN	1	0	Median	0.74847	0.77842	1.9864	2	2	Median	681620000	357510000	324110000	174890000	82745000	92141000	235030000	128050000	106970000	103130000	50620000	52511000	168580000	96096000	72483000	18542	4181	17571	113344;113345;113346;113347;113348;113349;113350;113351	153264;153265;153266;153267;153268;153269;153270;153271;153272;153273;153274;153275	153266			12	
GFVGYMEESGFLPHSHK	1	Unmodified	1920.8829	0.88286834	276	O15321	TM9SF1	Transmembrane 9 superfamily member 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.138	66.138	4	0.048051	58879	160511_QHF_FH_JSI11i_3	25.558	21.077			1.0481	0.9939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0481	0.9939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42863000	21074000	21790000	0	0	0	0	0	0	42863000	21074000	21790000	0	0	0	18543	276	17572	113352	153276	153276			0	
GFVHPDPLWIPFK	1	Unmodified	1551.8238	0.82382054	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	3	2	2	92.248	91.915	2;3	2.1002E-05	81569	160511_QHF_FH_JSI11i_3	96.64	85.535			0.8563	0.92968	82.101	8	2	Median	0.85211	0.73981	NaN	1	0	Median	0.8605	1.0636	14.444	3	1	Median	0.96109	0.92681	14.258	2	0	Median	0.32758	0.33598	174.7	2	1	Median	840830000	536050000	304790000	14920000	8670800	6248700	101280000	55209000	46074000	179710000	79384000	100320000	544920000	392780000	152140000	18544	2605	17573	113353;113354;113355;113356;113357;113358;113359;113360	153277;153278;153279;153280;153281;153282;153283;153284;153285	153278			8	
GFVKVVK	2	Acetyl (K)	817.50617	0.5061748	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	1.11						3	3	4	4	1	5	3	5	47.389	37.429	2	0.0015594	19491	160513_QHF_FH_JSI12Kac_5	111.28	78.808			0.7943	0.87474	11.84	10	0	Median	1.077	0.9358	NaN	1	0	Median	0.78788	0.91753	3.6821	3	0	Median	0.79205	0.76579	9.1393	3	0	Median	0.82667	0.88678	10.92	3	0	Median	976990000	539650000	437340000	131450000	71957000	59497000	287630000	159610000	128020000	328830000	183700000	145130000	229080000	124380000	104700000	18545	1590	17574	113361;113362;113363;113364;113365;113366;113367;113368;113369;113370;113371;113372;113373;113374	153286;153287;153288;153289;153290;153291;153292;153293;153294;153295;153296;153297;153298;153299;153300;153301;153302;153303;153304;153305;153306;153307;153308	153302	1604		23	
GFVLHKSK	2	Acetyl (K)	956.54435	0.54435122	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	34.65	25.693	2;3	0.0001738	14417	160513_QHF_FH_JSI11Kac_6	123.98	123.98			0.40658	0.43703	92.772	5	0	Median	NaN	NaN	NaN	0	0	Median	1.3255	1.5522	9.826	2	0	Median	0.25844	0.25022	3.7222	2	0	Median	0.40658	0.43703	NaN	1	0	Median	226820000	157140000	69679000	0	0	0	63812000	29387000	34425000	156990000	123790000	33198000	6013500	3958100	2055500	18546	3609	17575	113375;113376;113377;113378;113379;113380	153309;153310;153311;153312;153313;153314;153315;153316;153317	153310	2891		9	
GFVLYPVK	1	Unmodified	921.53239	0.53238955	2008	P62487	POLR2G	DNA-directed RNA polymerase II subunit RPB7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		61.475	60.79	2	0.054554	52878	160511_QHF_FH_JSI11i_2	83.801	75.46			0.72524	0.78668	6.0281	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68479	0.82094	NaN	1	0	Median	0.76808	0.75386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68042000	39107000	28934000	0	0	0	26463000	16856000	9606800	41579000	22251000	19328000	0	0	0	18547	2008	17576	113381;113382	153318;153319	153318			0	
GFVNILMTSFLQYISSEVNPPSDETDSSSAPSK	1	Unmodified	3546.6712	0.67121039	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.01	94.556	4	4.4069E-22	56904	160513_QHF_FH_JSI10Kac_6	113.37	108			0.99454	0.98203	1.1489	2	1	Median	1.1501	0.97409	NaN	1	1	Median	0.86005	0.99004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215990000	122510000	93486000	32616000	9090400	23526000	183380000	113420000	69960000	0	0	0	0	0	0	18548	2084	17577	113383;113384	153320;153321;153322	153321			3	
GFVPEKNFR	1	Acetyl (K)	1134.5822	0.58219329	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.661							1	4	3	2	2	2	2	60.587	50.122	2	0.0016441	25542	160513_QHF_FH_JSI12Kac_5	87.696	73.694			0.95173	1.0367	112.18	7	1	Median	1.3437	1.145	NaN	1	0	Median	0.8417	0.99445	17.899	2	0	Median	3.9103	3.7591	226.77	2	1	Median	0.95452	1.0339	0.37969	2	0	Median	114250000	55680000	58569000	13555000	5280000	8275300	22795000	12623000	10172000	39760000	18088000	21672000	38139000	19689000	18450000	18549	5542	17578	113385;113386;113387;113388;113389;113390;113391;113392	153323;153324;153325;153326;153327;153328;153329;153330	153327	3478		8	
GFVPGLFGTSHGALQFMAYELLK	1	Unmodified	2482.2719	0.27188811	4671	Q9H2D1	SLC25A32	Mitochondrial folate transporter/carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.296	89.733	3	4.0774E-14	50301	160513_QHF_FH_JSI11Kac_6	113.54	96.389			1.3266	1.3815	29.4	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97647	1.1222	NaN	1	0	Median	1.8022	1.7008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	406590000	189190000	217410000	0	0	0	187470000	92784000	94682000	219130000	96405000	122720000	0	0	0	18550	4671	17579	113393;113394;113395	153331;153332;153333;153334	153331			4	
GFVPSPTSQPGGHESLVDR	0	Unmodified	1965.9545	0.95445338	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.611	1	7	7							3	4	5	3	48.004	47.198	2;3	4.505E-42	41635	160511_QHF_FH_JSI11i_3	200.44	184.3			0.97123	0.99831	17.032	14	0	Median	1.2679	1.0874	1.1636	2	0	Median	0.9218	1.0988	9.4769	4	0	Median	0.98372	0.92525	24.404	5	0	Median	0.85577	0.86012	7.6864	3	0	Plateau	6007300000	3006900000	3000400000	980700000	432440000	548270000	1909300000	988680000	920600000	1939700000	951600000	988140000	1177600000	634180000	543440000	18551	1283	17580	113396;113397;113398;113399;113400;113401;113402;113403;113404;113405;113406;113407;113408;113409;113410	153335;153336;153337;153338;153339;153340;153341;153342;153343;153344;153345;153346;153347;153348;153349;153350;153351;153352;153353;153354;153355;153356;153357	153335			23	
GFVPYIGIVTILMNDYPK	1	Unmodified	2039.0802	0.080171162	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	100.03	90.691	3	1.0493E-11	52365	160513_QHF_FH_JSI9Kac_6	120.66	110.61			0.94021	0.79772	22.48	3	2	Plateau	0.94021	0.79772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94323	0.90651	NaN	1	1	Median	1.1552	1.2352	NaN	1	1	Median	298850000	144300000	154550000	97503000	42057000	55445000	0	0	0	116170000	63530000	52645000	85173000	38713000	46460000	18552	2067	17581	113411;113412;113413	153358;153359;153360	153359			3	
GFVQVDDGRK	1	Unmodified	1119.5673	0.5672715	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	5.84			8					5		2	3	5	3	24.291	18.623	2;3	1.055E-33	15944	160511_QHF_FH_JSI11i_3	185.81	147.02			1.5878	1.5093	34.523	7	3	Median	1.8518	1.5223	26.92	2	1	Median	1.0944	1.2823	55.026	2	0	Median	1.7703	1.6863	15.684	2	2	Median	0.79387	0.87765	NaN	1	0	Median	246690000	99135000	147550000	28497000	9975100	18522000	97359000	42599000	54760000	114930000	44408000	70525000	5899200	2153000	3746300	18553	1818	17582	113414;113415;113416;113417;113418;113419;113420;113421;113422;113423;113424;113425;113426	153361;153362;153363;153364;153365;153366;153367;153368;153369;153370;153371;153372;153373;153374;153375;153376	153363			16	
GFVTADMIR	0	Unmodified	1008.5063	0.50625115	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				54.29	52.715	2	0.038124	43218	160511_QHF_FH_JSI9i_3	59.245	41.21			0.92128	0.74679	NaN	1	0	Median	0.92128	0.74679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25879000	12705000	13174000	25879000	12705000	13174000	0	0	0	0	0	0	0	0	0	18554	5309	17583	113427	153377	153377			0	
GFVVINQK	1	Unmodified	903.5178	0.51780212	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.38	4	4	4			3	3	4	4	5	7	7	7	42.842	37.224	2	1.6331E-23	22040	160513_QHF_FH_JSI11Kac_4	181.83	124.27			0.98077	1.029	12.611	26	0	Median	1.1212	0.97737	8.9935	5	0	Median	0.8514	0.97404	17.02	7	0	Median	1.0131	1.0304	8.1877	7	0	Median	0.9558	1.0568	14.718	7	0	Median	7571200000	3602200000	3969000000	1271600000	575730000	695820000	1855600000	978030000	877600000	2529700000	1165100000	1364600000	1914300000	883320000	1030900000	18555	1494;3835	17584	113428;113429;113430;113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442;113443;113444;113445;113446;113447;113448;113449;113450;113451;113452;113453	153378;153379;153380;153381;153382;153383;153384;153385;153386;153387;153388;153389;153390;153391;153392;153393;153394;153395;153396;153397;153398;153399;153400;153401;153402;153403;153404;153405;153406;153407;153408;153409;153410;153411;153412;153413;153414;153415;153416;153417;153418;153419;153420;153421;153422;153423;153424;153425;153426;153427;153428;153429;153430;153431;153432;153433;153434;153435;153436;153437;153438;153439;153440;153441;153442;153443;153444;153445;153446;153447;153448	153406			71	
GFVYSSFLK	1	Unmodified	1046.5437	0.54368251	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	74.23	68.767	2	0.0010356	57544	160511_QHF_FH_JSI9i_3	81.548	64.162			0.66553	0.61589	66.032	2	2	Median	1.169	0.98239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3789	0.38612	NaN	1	1	Median	54233000	30369000	23864000	34648000	16064000	18584000	0	0	0	0	0	0	19585000	14305000	5280100	18556	3169	17585	113454;113455	153449;153450	153449			2	
GFYDKDSSGWSSSK	2	Acetyl (K)	1591.6791	0.67906638	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	56.951	46.32	2	0.0030745	26172	160513_QHF_FH_JSI12Kac_4	68.069	61.685			0.40989	0.46264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40989	0.46264	NaN	1	0	Median	1309300	937660	371660	0	0	0	0	0	0	0	0	0	1309300	937660	371660	18557	154	17586	113456	153451	153451	89		1	
GFYDPPR	0	Unmodified	850.39735	0.39735263	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.34	25.981	2	0.0099712	21754	160511_QHF_FH_JSI11i_2	67.035	57.794			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18558	1382	17587	113457	153452	153452			1	
GFYEGIMLVDGFK	1	Unmodified	1474.7166	0.71663786	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.96		5							4	1	3	2	3	93.833	90.03	2;3	1.1908E-13	42854	160513_QHF_FH_JSI12Kac_6	171.92	131.2			0.81045	0.88531	24.229	8	6	Median	1.3205	1.1466	NaN	1	1	Median	0.7265	0.84438	14.464	2	2	Median	0.96223	0.9276	51.567	2	1	Median	0.8081	0.83799	14.105	3	2	Median	495790000	303080000	192700000	34785000	15748000	19037000	114340000	68475000	45861000	130010000	86266000	43740000	216660000	132590000	84066000	18559	5215	17588	113458;113459;113460;113461;113462;113463;113464;113465;113466	153453;153454;153455;153456;153457;153458;153459;153460;153461;153462	153461			10	
GFYEGIMLVDGFK	1	Oxidation (M)	1490.7116	0.71155248	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	84.601	77.067	2	4.6998E-06	40508	160513_QHF_FH_JSI12Kac_6	121.08	93.961			3.0551	3.3923	166.85	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88901	1.0426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.499	11.038	NaN	1	1	Median	299710000	72419000	227290000	0	0	0	104140000	48662000	55482000	0	0	0	195570000	23757000	171810000	18560	5215	17588	113467;113468	153463;153464	153463		2604	2	
GFYESTALIQHFIIHTGERPFK	1	Unmodified	2590.3332	0.33324281	2548	Q14592	ZNF460	Zinc finger protein 460	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	84.31	76.428	5	9.8046E-06	43058	160513_QHF_FH_JSI10Kac_6	72.443	65.167			0.67085	0.80527	55.886	3	0	Median	0.61806	0.53968	NaN	1	0	Median	0.67085	0.80527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5513	1.6276	NaN	1	0	Median	227410000	121560000	105850000	81665000	55256000	26409000	94542000	46136000	48405000	0	0	0	51203000	20165000	31038000	18561	2548	17589	113469;113470;113471	153465;153466	153466			2	
GFYIYQEGVK	1	Unmodified	1202.5972	0.59717465	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.05		4	2				3	5	4	4	5	4	5	60.731	53.5	2	2.6477E-09	29374	160513_QHF_FH_JSI10Kac_6	130.75	112.52			1.0909	0.9819	20.681	18	2	Median	1.1388	0.94424	2.9644	4	1	Median	0.89693	1.0448	20.732	5	1	Median	0.8449	0.85641	20.581	4	0	Linear	0.94528	0.98859	30.354	5	0	Median	1639700000	829310000	810420000	325280000	161290000	163990000	406250000	220960000	185290000	517900000	257270000	260620000	390310000	189790000	200520000	18562	1507	17590	113472;113473;113474;113475;113476;113477;113478;113479;113480;113481;113482;113483;113484;113485;113486;113487;113488;113489	153467;153468;153469;153470;153471;153472;153473;153474;153475;153476;153477;153478;153479;153480;153481;153482;153483;153484;153485;153486;153487;153488;153489;153490;153491;153492;153493;153494	153494			26	
GFYIYQEGVKR	1	Acetyl (K)	1400.7089	0.70885036	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.31	56.671	2	3.093E-06	30719	160513_QHF_FH_JSI11Kac_6	113.22	83.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18563	1507	17591	113490	153495	153495	1530		1	
GFYLNQSTAYHFNPK	1	Unmodified	1785.8475	0.84746911	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	3	4	3	3	62.193	57.698	2;3	2.4498E-62	31757	160513_QHF_FH_JSI10Kac_6	215.46	192.24			1.1264	1.0728	29.756	11	4	Median	1.1264	0.92139	16.53	3	1	Plateau	0.83555	0.98861	22.135	3	0	Plateau	1.467	1.4025	64.528	2	1	Median	1.4793	1.5063	23.173	3	2	Median	2011100000	971380000	1039700000	502990000	216940000	286050000	646960000	361050000	285900000	151250000	84578000	66669000	709900000	308810000	401080000	18564	485	17592	113491;113492;113493;113494;113495;113496;113497;113498;113499;113500;113501;113502;113503	153496;153497;153498;153499;153500;153501;153502;153503;153504;153505;153506;153507;153508;153509;153510;153511;153512;153513;153514;153515;153516;153517	153516			22	
GFYSNGAASSVSTK	1	Unmodified	1374.6416	0.64155866	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.71	4.27	2	2	2				1				1	4	2	29.974	27.7	2	9.1847E-10	24651	160511_QHF_FH_JSI10i_1	105.03	94.745			1.269	1.2319	57.486	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0581	1.9527	45.937	2	1	Median	0.80037	0.8573	32.055	2	1	Median	59827000	32963000	26864000	0	0	0	0	0	0	21240000	10651000	10589000	38587000	22312000	16275000	18565	1430	17593	113504;113505;113506;113507;113508;113509;113510	153518;153519;153520;153521;153522;153523;153524;153525	153521			8	
GFYTVYR	0	Unmodified	904.4443	0.44430282	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	44.446	36.73	2	1.422E-12	20324	160513_QHF_FH_JSI10Kac_6	160.69	142.93			1.0074	1.0304	16.447	5	0	Median	1.3965	1.1676	17.674	2	0	Median	0.75942	0.89097	NaN	1	0	Median	0.90818	0.88478	NaN	1	0	Median	1.0074	1.0694	NaN	1	0	Median	197510000	99024000	98482000	77521000	32980000	44541000	68114000	39199000	28915000	21370000	11198000	10172000	30501000	15647000	14854000	18566	2883	17594	113511;113512;113513;113514;113515	153526;153527;153528;153529;153530;153531;153532	153532			7	
GFYYYQR	0	Unmodified	995.45012	0.45011648	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		42.99	33.872	2	2.8606E-24	18817	160513_QHF_FH_JSI10Kac_6	178.84	151.31			1.0509	1.1131	13.374	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87245	1.0126	NaN	1	0	Median	1.2658	1.2235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112170000	58597000	53578000	0	0	0	81340000	42742000	38598000	30835000	15855000	14980000	0	0	0	18567	409	17595	113516;113517;113518	153533;153534;153535	153535			3	
GGAAPEGPNEAEVTSGKPEQEVPDAEEEK	2	Unmodified	2950.3316	0.33158365	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	42.515	41.861	3;4	8.742E-34	37552	160511_QHF_FH_JSI10i_1	153.77	150.78			1.011	0.94389	19.199	8	1	Median	1.4088	1.1613	31.108	2	1	Median	0.70447	0.8211	7.8057	2	0	Median	1.011	0.98128	3.706	2	0	Median	0.98293	1.0423	16.585	2	0	Median	1852700000	962230000	890470000	286750000	133170000	153580000	480040000	273870000	206170000	631340000	317730000	313610000	454570000	237460000	217110000	18568	1649	17596	113519;113520;113521;113522;113523;113524;113525;113526	153536;153537;153538;153539;153540;153541;153542;153543;153544;153545;153546;153547;153548;153549;153550;153551;153552	153547			17	
GGAARPNGPAAGNK	1	Unmodified	1236.6323	0.63233138	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			5.5398	5.0435	2;3	1.1217E-05	3107	160511_QHF_FH_JSI9i_3	81.239	55.301			1.024	1.1861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.024	1.1861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28340000	12581000	15759000	0	0	0	28340000	12581000	15759000	0	0	0	0	0	0	18569	1727	17597	113527;113528;113529	153553;153554;153555	153554			3	
GGAASGSDSADKK	2	Acetyl (K)	1191.5368	0.53675924	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	6.0912	-1.1213	2	6.4554E-07	1899	160513_QHF_FH_JSI12Kac_2	108.7	99.483			0.72258	0.7999	85.829	2	0	Median	NaN	NaN	NaN	0	0	Median	1.303	1.4676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.40071	0.43598	NaN	1	0	Median	5559500	3586600	1973000	0	0	0	1946400	853780	1092600	1078800	1078800	0	2534400	1654000	880350	18570	5489	17598	113530;113531;113532	153556;153557;153558;153559	153559	3449		4	
GGAAVDPDSGLEHSAHVLEK	1	Unmodified	1987.9599	0.95993268	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.497		11	9							6	4	5	5	44.82	44.028	2;3;4	3.3648E-25	37302	160511_QHF_FH_JSI12i_3	170.06	163.94			0.92388	0.98887	25.359	18	4	Median	1.2176	1.022	5.3427	4	1	Median	0.84912	1.0479	8.8882	4	2	Median	1.038	1.0029	42.684	5	1	Median	0.79587	0.8222	4.7546	5	0	Median	7078200000	3595900000	3482300000	451590000	214150000	237440000	1399700000	773200000	626530000	2529200000	1146500000	1382700000	2697600000	1462000000	1235600000	18571	939	17599	113533;113534;113535;113536;113537;113538;113539;113540;113541;113542;113543;113544;113545;113546;113547;113548;113549;113550;113551;113552	153560;153561;153562;153563;153564;153565;153566;153567;153568;153569;153570;153571;153572;153573;153574;153575;153576;153577;153578;153579;153580;153581;153582;153583;153584;153585;153586;153587;153588;153589;153590;153591;153592;153593;153594;153595;153596;153597;153598;153599;153600;153601;153602	153599			43	
GGADVNIR	0	Unmodified	800.41407	0.41406533	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	18.519	10.965	2	0.025991	7691	160513_QHF_FH_JSI12Kac_4	52.403	17.047			1.1233	1.225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1233	1.225	NaN	1	0	Median	3928900	1797800	2131100	0	0	0	0	0	0	0	0	0	3928900	1797800	2131100	18572	910	17600	113553	153603	153603			1	
GGADVSGGVSAPDISLGEGHLSVK	1	Unmodified	2208.1022	0.10223983	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	67.42	66.679	3	6.9619E-13	60691	160511_QHF_FH_JSI11i_1	102.21	96.242			1.025	0.98882	11.257	8	0	Median	1.155	0.95722	19.022	2	0	Median	0.74297	0.89847	0.50938	2	0	Median	1.0811	1.0647	9.1875	2	0	Median	0.96776	1.0411	8.5619	2	0	Median	661950000	345810000	316140000	94773000	45257000	49516000	214080000	117380000	96694000	162180000	81197000	80980000	190920000	101970000	88949000	18573	2286	17601	113554;113555;113556;113557;113558;113559;113560;113561	153604;153605;153606;153607;153608;153609;153610;153611;153612;153613;153614	153605			10	
GGAEQFMEETER	0	Unmodified	1382.5772	0.57724384	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.44	4	4	2			1	3			2	4	2	6	41.071	37.426	2	1.2731E-148	31840	160511_QHF_FH_JSI12i_2	301.6	261.36			0.91462	0.98648	8.6783	13	0	Median	1.1964	0.99366	2.8292	2	0	Median	0.86487	1.052	6.6433	4	0	Median	0.97361	0.96544	3.0495	2	0	Median	0.81821	0.87112	10.221	5	0	Median	7689200000	4010400000	3678800000	1479900000	643450000	836410000	2284900000	1287300000	997550000	2432000000	1298900000	1133100000	1492500000	780760000	711780000	18574	4321	17602	113562;113563;113564;113565;113566;113567;113568;113569;113570;113571;113572;113573;113574;113575	153615;153616;153617;153618;153619;153620;153621;153622;153623;153624;153625;153626;153627;153628;153629;153630;153631;153632;153633;153634;153635;153636	153618			20	
GGAEQFMEETER	0	Oxidation (M)	1398.5722	0.57215846	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.17	6.07	5					5	2			2	3	2	5	26.961	22.362	2	1.1691E-15	33381	160511_QHF_FH_JSI9i_1	159.09	144.97			1.1425	0.88714	11.876	11	3	Linear	1.0997	0.92399	0.022323	2	0	Median	0.79773	0.9428	22.784	3	2	Median	0.8482	0.80843	4.8199	2	0	Median	0.81716	0.8644	7.4872	4	1	Median	375480000	191150000	184320000	199000000	92411000	106590000	48630000	26874000	21756000	52586000	29756000	22830000	75261000	42113000	33148000	18575	4321	17602	113576;113577;113578;113579;113580;113581;113582;113583;113584;113585;113586;113587	153637;153638;153639;153640;153641;153642;153643;153644;153645;153646	153640		2443	10	
GGAESHTFK	1	Unmodified	932.43519	0.4351947	1700	P50238	CRIP1	Cysteine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.53		10	4					5	5	4	4	9	7	6.2308	2.4627	2;3	1.6114E-41	3291	160511_QHF_FH_JSI12i_3	214.81	167.73			0.9133	0.9585	19.326	24	0	Median	1.4738	1.245	13.885	4	0	Median	0.90909	1.112	14.535	4	0	Median	0.91027	0.93653	15.027	9	0	Median	0.7328	0.81138	9.7733	7	0	Median	7024400000	3456000000	3568400000	943960000	305910000	638050000	1105500000	583660000	521860000	2416200000	1161100000	1255100000	2558700000	1405300000	1153400000	18576	1700	17603	113588;113589;113590;113591;113592;113593;113594;113595;113596;113597;113598;113599;113600;113601;113602;113603;113604;113605;113606;113607;113608;113609;113610;113611	153647;153648;153649;153650;153651;153652;153653;153654;153655;153656;153657;153658;153659;153660;153661;153662;153663;153664;153665;153666;153667;153668;153669;153670;153671;153672;153673;153674	153669			28	
GGAEVQIFAPDVPQMHVIDHTK	1	Unmodified	2388.1896	0.18961504	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	2	3	75.396	74.922	3;4	1.8626E-07	66746	160511_QHF_FH_JSI11i_3	99.999	92.195			0.87978	0.82034	129.89	7	5	Median	NaN	NaN	NaN	0	0	Median	3.438	4.2276	249.52	2	2	Median	1.1398	1.0551	35.592	2	2	Median	1.016	1.0446	28.235	3	1	Plateau	1067500000	310110000	757340000	0	0	0	593040000	87107000	505930000	183260000	62194000	121070000	291160000	160810000	130340000	18577	3	17604	113612;113613;113614;113615;113616;113617;113618	153675;153676;153677;153678;153679;153680;153681;153682;153683	153675			8	
GGAGFPTGLK	1	Unmodified	903.48142	0.48141661	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	7	1							1			1	1		36.607	36.246	2	0.021165	20454	160513_QHF_FH_JSI11Kac_5	51.346	30.046			1.5117	1.7632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5117	1.7632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41592000	12308000	29284000	0	0	0	41592000	12308000	29284000	0	0	0	0	0	0	18578	1687	17605	113619;113620	153684;153685	153685			2	
GGAGGGPGGAGGGSGQR	0	Unmodified	1255.5654	0.56537402	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		5.1817	-2.4178	2	0.017438	1687	160513_QHF_FH_JSI11Kac_4	53.569	30.829			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18579	3163	17606	113621	153686	153686			1	
GGAGGTDGQGGTFR	0	Unmodified	1236.5483	0.54832698	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.1	5.54	1	2				2	5				4	2	4	12.752	8.094	2	3.9608E-52	7877	160511_QHF_FH_JSI10i_1	220.29	208.93			0.97249	0.98628	11.206	5	2	Median	NaN	NaN	NaN	0	0	Median	0.78033	0.94369	6.2434	2	0	Median	1.0871	1.0757	17.071	2	1	Median	0.97249	1.015	NaN	1	1	Median	288230000	180240000	107990000	0	0	0	279300000	175750000	103550000	7320000	3598300	3721700	1606800	891470	715330	18580	5269	17607	113622;113623;113624;113625;113626;113627;113628;113629;113630;113631	153687;153688;153689;153690;153691;153692;153693;153694;153695;153696;153697;153698;153699	153692			13	
GGAGVGSMTK	1	Unmodified	863.4171	0.41710179	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.86	4	4	4				3			3	4	4	4	11.635	9.6405	2	9.7604E-25	6396	160513_QHF_FH_JSI11Kac_4	183.65	118.39			0.86014	0.974	14.491	15	0	Median	1.194	1.0087	1.799	3	0	Plateau	0.85925	1.0034	12.14	4	0	Median	0.93484	0.94218	20.136	4	0	Median	0.76268	0.82765	9.0645	4	0	Median	14759000000	8296900000	6461800000	2939200000	1385800000	1553400000	4638000000	2628600000	2009400000	3811800000	2285700000	1526100000	3369700000	1996800000	1372900000	18581	1483	17608	113632;113633;113634;113635;113636;113637;113638;113639;113640;113641;113642;113643;113644;113645;113646	153700;153701;153702;153703;153704;153705;153706;153707;153708;153709;153710;153711;153712;153713;153714;153715;153716;153717;153718;153719;153720;153721;153722;153723	153712			24	
GGAGVGSMTK	1	Oxidation (M)	879.41202	0.41201641	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	5.7	7	3	1		3	10	4			11	4	6	7	8.4545	0.278	2	2.8006E-07	2793	160511_QHF_FH_JSI12i_1	117.89	90.636			0.97491	0.95904	74.441	24	3	Median	1.3438	1.4143	101.14	10	0	Plateau	0.92141	1.0996	13.498	4	1	Median	0.97524	0.96798	36.111	5	0	Median	0.82877	0.87554	12.954	5	2	Median	3271400000	1726600000	1544800000	831620000	346050000	485560000	745660000	412110000	333550000	833850000	486860000	346990000	860240000	481540000	378700000	18582	1483	17608	113647;113648;113649;113650;113651;113652;113653;113654;113655;113656;113657;113658;113659;113660;113661;113662;113663;113664;113665;113666;113667;113668;113669;113670;113671;113672;113673;113674	153724;153725;153726;153727;153728;153729;153730;153731;153732;153733;153734;153735;153736;153737;153738;153739;153740;153741;153742;153743;153744;153745;153746;153747;153748;153749;153750;153751;153752;153753;153754;153755;153756;153757;153758;153759;153760;153761;153762	153731		1159	39	
GGAGVGSMTKIYGGR	1	Acetyl (K);Oxidation (M)	1467.714	0.71401209	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		40.629	30.539	2	0.0013034	17489	160513_QHF_FH_JSI11Kac_5	67.726	58.537			0.22286	0.21892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22286	0.21892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5033600	4023500	1010100	0	0	0	0	0	0	5033600	4023500	1010100	0	0	0	18583	1483	17609	113675	153763	153763	1484	1159	1	
GGAGVGSMTKIYGGR	1	Acetyl (K)	1451.7191	0.71909747	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		59.375	48.614	2	4.5006E-74	26632	160513_QHF_FH_JSI11Kac_5	222.49	177.33			0.5328	0.57162	104.29	2	0	Median	NaN	NaN	NaN	0	0	Median	1.017	1.195	NaN	1	0	Median	0.27913	0.27343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14211000	10721000	3490700	0	0	0	2908800	1349100	1559700	11303000	9371700	1931000	0	0	0	18584	1483	17609	113676;113677	153764	153764	1484		1	
GGAIDRYWPTADGR	0	Unmodified	1533.7324	0.73243935	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			49.105	47.537	3	0.0004862	39672	160511_QHF_FH_JSI10i_3	63.709	51.563			1.0628	1.1993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0628	1.1993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40644000	17775000	22869000	0	0	0	40644000	17775000	22869000	0	0	0	0	0	0	18585	1784	17610	113678;113679	153765;153766	153765			2	
GGALLTSPSGPGYHIMLPFITTFR	0	Unmodified	2532.3199	0.31990094	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.745	86.355	3	4.1408E-52	48373	160513_QHF_FH_JSI9Kac_6	149.41	127.04			1.08	1.0875	3.0098	4	0	Median	1.2927	1.1282	NaN	1	0	Median	0.88307	1.0585	NaN	1	0	Median	1.1744	1.1075	NaN	1	0	Median	0.99324	1.0679	NaN	1	0	Median	1064800000	527480000	537350000	302040000	148250000	153790000	451500000	226470000	225030000	160830000	76964000	83870000	150450000	75792000	74661000	18586	533	17611	113680;113681;113682;113683	153767;153768;153769;153770	153768			4	
GGALLTSPSGPGYHIMLPFITTFR	0	Oxidation (M)	2548.3148	0.31481556	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		92.912	83.54	3	3.1102E-05	47031	160513_QHF_FH_JSI11Kac_6	96.016	81.855			1.0353	1.0026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0353	1.0026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45785000	25556000	20229000	0	0	0	0	0	0	45785000	25556000	20229000	0	0	0	18587	533	17611	113684	153771	153771		197	1	
GGALLTSTSGPGFHLMLPFITSYK	1	Unmodified	2494.293	0.29301748	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	95.055	86.661	3	4.3334E-64	50897	160513_QHF_FH_JSI10Kac_6	190.19	164.99			0.90904	0.90352	15.668	4	1	Median	0.90044	0.77511	NaN	1	1	Median	0.68967	0.82772	NaN	1	0	Median	1.1482	1.0896	NaN	1	0	Median	0.91773	0.98626	NaN	1	0	Median	948730000	516240000	432490000	232820000	132740000	100070000	305550000	175150000	130400000	319120000	159170000	159950000	91238000	49173000	42065000	18588	622	17612	113685;113686;113687;113688	153772;153773;153774;153775;153776	153775			5	
GGALLTSTSGPGFHLMLPFITSYK	1	Oxidation (M)	2510.2879	0.28793211	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	1	0	By matching			By MS/MS	16	0									2	1			1	92.989	83.839	3	1.7758E-13	45352	160513_QHF_FH_JSI12Kac_6	97.253	77.355			1.1364	1.0892	17.382	2	0	Median	1.1034	0.96324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1703	1.2317	NaN	1	0	Median	133720000	51367000	82349000	64898000	26839000	38059000	0	0	0	0	0	0	68818000	24527000	44290000	18589	622	17612	113689;113690	153777;153778	153778		229	2	
GGANLIK	1	Unmodified	671.39662	0.39662435	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS				11.5	0.5				1	1					2				4.994	-4.2124	2	0.49523	1459	160513_QHF_FH_JSI9Kac_2	17.562	1.0065			0.89324	0.61597	49.625	2	0	Median	0.89324	0.61597	49.625	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217500000	106550000	110950000	217500000	106550000	110950000	0	0	0	0	0	0	0	0	0	18590	3921	17613	113691;113692	153779	153779			0	
GGARVEPADASGTEK	1	Unmodified	1443.6954	0.69538514	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		9.3138	9.3138	2;3	0.00045791	6952	160511_QHF_FH_JSI11i_3	64.507	34.7			1.7802	1.6758	8.1547	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7802	1.6758	8.1547	2	0	Median	NaN	NaN	NaN	0	0	Median	74528000	25459000	49070000	0	0	0	0	0	0	74528000	25459000	49070000	0	0	0	18591	1645	17614	113693;113694	153780;153781	153780			2	
GGASIYGK	1	Unmodified	751.38645	0.38645359	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.67	6.13	1						2				1		2	16.7	6.775	2	0.012114	6572	160513_QHF_FH_JSI10Kac_4	63.21	34.312			0.94508	1.1427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94508	1.1427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4547900	2467200	2080700	0	0	0	4547900	2467200	2080700	0	0	0	0	0	0	18592	5581	17615	113695;113696;113697	153782;153783;153784	153783			3	
GGATPPALLLLLSR	0	Unmodified	1377.8344	0.83438523	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.66	101.47	2	0.042604	82401	160511_QHF_FH_JSI9i_3	46.069	35.546			0.49239	0.39936	NaN	1	1	Median	0.49239	0.39936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26062000	14214000	11848000	26062000	14214000	11848000	0	0	0	0	0	0	0	0	0	18593	5329	17616	113698	153785	153785			1	
GGAVVDEGPTGVK	1	Unmodified	1184.6037	0.60371659	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				2	3	3	3	28.342	21.881	2	1.7795E-31	21068	160511_QHF_FH_JSI10i_1	196.27	166.8			1.2367	0.94142	14.588	11	2	Linear	1.283	1.038	23.364	2	0	Median	1.07	1.2423	15.458	3	1	Plateau	1.1148	1.0706	16.004	3	1	Plateau	0.99597	1.0646	8.7749	3	0	Plateau	4035500000	2034500000	2001000000	931010000	410800000	520210000	1083000000	589440000	493570000	1144200000	548720000	595490000	877300000	485550000	391750000	18594	289	17617	113699;113700;113701;113702;113703;113704;113705;113706;113707;113708;113709	153786;153787;153788;153789;153790;153791;153792;153793;153794;153795;153796;153797;153798;153799;153800;153801;153802;153803	153794			18	
GGAYYPVTVK	1	Unmodified	1053.5495	0.54949617	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	38.986	36.423	2	0.00085711	21607	160513_QHF_FH_JSI11Kac_4	88.948	66.208			0.4588	0.46344	64.816	5	1	Median	0.41474	0.34008	NaN	1	0	Median	0.28679	0.3379	NaN	1	0	Median	1.0323	1.0121	66.334	2	1	Median	0.4588	0.46344	NaN	1	0	Median	522190000	307030000	215160000	106850000	56304000	50550000	113470000	69079000	44391000	187560000	112610000	74950000	114310000	69037000	45268000	18595	4852	17618	113710;113711;113712;113713;113714	153804;153805;153806;153807;153808;153809	153808			6	
GGDAPAAGEDA	0	Unmodified	929.37265	0.37265402	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.12	8			4	2					2	4	3	5	10.816	7.4179	1;2	3.1152E-05	7420	160511_QHF_FH_JSI12i_1	98.629	96.836			1.1831	1.1175	18.531	14	0	Median	1.2281	0.99487	2.8509	2	0	Median	1.2582	1.484	6.8921	4	0	Median	1.1738	1.1441	1.9995	3	0	Median	0.91354	0.96379	7.872	5	0	Median	3820200000	1790400000	2029800000	823130000	366660000	456480000	901760000	393850000	507910000	1036200000	483120000	553080000	1059100000	546780000	512300000	18596	2026	17619	113715;113716;113717;113718;113719;113720;113721;113722;113723;113724;113725;113726;113727;113728	153810;153811;153812;153813;153814;153815;153816;153817;153818;153819;153820;153821;153822;153823;153824;153825	153812			16	
GGDDLGTEIANTLYR	0	Unmodified	1593.7635	0.76346471	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	78.009	77.509	2;3	3.7568E-44	70362	160511_QHF_FH_JSI10i_1	176.51	142.63			0.96159	0.8959	12.342	10	5	Median	0.97401	0.79306	8.9543	3	2	Median	0.67741	0.77253	10.847	2	1	Median	0.97562	0.94376	3.313	3	2	Median	0.93063	0.9759	9.9252	2	0	Median	374870000	203180000	171690000	83450000	46210000	37239000	69240000	43424000	25816000	141290000	71008000	70285000	80887000	42533000	38354000	18597	2607	17620	113729;113730;113731;113732;113733;113734;113735;113736;113737;113738;113739	153826;153827;153828;153829;153830;153831;153832;153833;153834;153835;153836;153837	153833			12	
GGDGIKPPPIIGR	1	Unmodified	1275.7299	0.72992016	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		44.968	43.913	3	0.0033852	38460	160511_QHF_FH_JSI11i_3	50.843	47.198			0.87661	0.82317	10.175	3	0	Plateau	1.2593	1.0088	NaN	1	0	Median	0.79966	0.91706	NaN	1	0	Median	0.87661	0.82317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243570000	126690000	116880000	48317000	20335000	27982000	49685000	23795000	25889000	145570000	82559000	63013000	0	0	0	18598	4992	17621	113740;113741;113742	153838;153839	153838			2	
GGDGINSIGGGQK	1	Unmodified	1158.5629	0.56291441	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	18.084	17.639	2	3.3545E-06	15015	160511_QHF_FH_JSI10i_1	122.7	88.447			0.60844	0.61033	94.731	5	4	Median	0.60844	0.49772	NaN	1	1	Median	1.24	1.439	162.46	2	1	Median	0.82269	0.80268	NaN	1	1	Median	0.59025	0.61033	NaN	1	1	Median	373150000	241210000	131940000	72884000	46691000	26193000	120390000	75149000	45242000	99763000	67461000	32302000	80109000	51911000	28199000	18599	140	17622	113743;113744;113745;113746;113747	153840;153841;153842;153843;153844	153843			5	
GGDGQINEQVEK	1	Unmodified	1272.5946	0.59460847	515	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.154	14.883	2	3.9154E-65	12327	160511_QHF_FH_JSI11i_1	235.49	189.09			0.74886	0.87378	13.904	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74886	0.87378	NaN	1	0	Median	1.1035	1.0718	NaN	1	0	Median	0.77456	0.82183	NaN	1	0	Median	191620000	91061000	100560000	0	0	0	72329000	42085000	30244000	59324000	25447000	33877000	59963000	23528000	36435000	18600	515	17623	113748;113749;113750	153845;153846;153847;153848;153849;153850	153845			6	
GGDIMLWNFGIK	1	Unmodified	1349.6802	0.68019277	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	97.702	97.486	2	0.00034336	84014	160511_QHF_FH_JSI12i_2	71.451	55.821			0.75841	0.81622	52.601	3	2	Plateau	2.5685	2.1537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97859	0.93231	NaN	1	1	Median	0.75841	0.81622	NaN	1	0	Median	39781000	20814000	18966000	8441600	2347900	6093600	0	0	0	16976000	9864200	7112100	14363000	8602200	5760400	18601	3826	17624	113751;113752;113753	153851;153852;153853	153851			3	
GGDINFVFTGFSVNGK	1	Unmodified	1657.81	0.81002097	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0			By MS/MS		2	0		1										1		92.81	92.362	2	0.0040741	81063	160511_QHF_FH_JSI11i_2	62.14	55.9			0.29806	0.30357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29806	0.30357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20331000	17504000	2827100	0	0	0	0	0	0	20331000	17504000	2827100	0	0	0	18602	2638;2895	17625	113754	153854	153854			1	
GGDISVCEWYQR	0	Unmodified	1468.6405	0.6405128	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	56.153	55.445	2	5.1789E-17	47917	160511_QHF_FH_JSI11i_2	168.74	158.21			1.0149	1.1819	30.688	6	2	Median	NaN	NaN	NaN	0	0	Median	1.0013	1.2077	27.263	2	1	Median	0.81908	0.79325	1.602	2	0	Median	1.3684	1.4638	6.0413	2	1	Median	297060000	142060000	155000000	0	0	0	96570000	48657000	47914000	109840000	54796000	55047000	90644000	38606000	52038000	18603	1061	17626	113755;113756;113757;113758;113759;113760	153855;153856;153857;153858;153859;153860	153859			3	
GGDLMAYDR	0	Unmodified	996.43348	0.43348014	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.67	5.91	2	2					2			2	1		3	29.697	28.651	2	2.0818E-06	25057	160511_QHF_FH_JSI9i_1	128.12	96.186			0.81635	0.77731	24.8	4	0	Median	1.1307	0.94457	20.527	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6115	0.66702	14.605	2	0	Median	654410000	346750000	307660000	301860000	147630000	154230000	0	0	0	0	0	0	352550000	199120000	153430000	18604	1975	17627	113761;113762;113763;113764;113765;113766	153861;153862;153863;153864;153865;153866;153867;153868	153866			7	
GGDLMAYDRR	0	Unmodified	1152.5346	0.53459117	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.88		8	8					2	4	6	6	5	5	25.324	22.276	2;3	8.8209E-44	19302	160511_QHF_FH_JSI10i_2	214.96	156.37			1.0394	1.0344	20.192	21	1	Median	1.4402	1.238	8.1436	5	1	Median	0.83912	1.0103	17.658	6	0	Median	1.04	1.0344	5.5038	5	0	Median	0.77325	0.82039	15.974	5	0	Median	7405800000	3592800000	3813000000	1237300000	462030000	775280000	2012100000	1087200000	924960000	2938000000	1377400000	1560600000	1218400000	666270000	552140000	18605	1975	17628	113767;113768;113769;113770;113771;113772;113773;113774;113775;113776;113777;113778;113779;113780;113781;113782;113783;113784;113785;113786;113787;113788	153869;153870;153871;153872;153873;153874;153875;153876;153877;153878;153879;153880;153881;153882;153883;153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896;153897;153898;153899;153900;153901;153902	153895			32	
GGDLMAYDRR	0	Oxidation (M)	1168.5295	0.52950579	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.56		3	7					1		1	5	2	3	19.807	18.318	2;3	0.0081623	18248	160511_QHF_FH_JSI10i_3	46.352	26.145			1.0738	1.0203	25.671	9	1	Median	1.2096	1.0203	NaN	1	0	Median	1.1646	1.3453	15.913	3	1	Median	1.1312	1.0958	11.419	2	0	Median	0.76459	0.76878	18.991	3	0	Median	612050000	320250000	291800000	75820000	34821000	40999000	160500000	74514000	85990000	153110000	80753000	72357000	222620000	130160000	92457000	18606	1975	17628	113789;113790;113791;113792;113793;113794;113795;113796;113797;113798;113799	153903;153904;153905;153906;153907;153908;153909	153904		1638	6	
GGDPALIR	0	Unmodified	797.43955	0.43955179	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	20.738	20.223	2	0.00012323	17383	160511_QHF_FH_JSI10i_1	127.12	85.615			0.9756	1.0632	12.63	4	0	Median	1.4407	1.1509	NaN	1	0	Median	0.90762	1.1115	NaN	1	0	Median	1.0487	1.0171	NaN	1	0	Median	0.81304	0.86725	NaN	1	0	Median	1076800000	566860000	509940000	249600000	109040000	140560000	281920000	161600000	120310000	288520000	146330000	142180000	256770000	149880000	106890000	18607	1667	17629	113800;113801;113802;113803;113804	153910;153911;153912;153913;153914;153915;153916;153917	153916			8	
GGDPLEK	1	Unmodified	714.35482	0.35481911	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.468	11.064	2	0.040604	9032	160511_QHF_FH_JSI12i_1	47.082	23.11			1.0678	1.0689	7.6785	4	0	Median	1.4242	1.1696	NaN	1	0	Median	0.84884	1.0102	NaN	1	0	Median	1.1662	1.1309	NaN	1	0	Median	0.97765	1.0079	NaN	1	0	Median	300190000	150260000	149920000	71899000	35010000	36890000	75132000	41762000	33370000	80833000	35981000	44853000	72324000	37513000	34811000	18608	4290	17630	113805;113806;113807;113808	153918	153918			1	
GGDQIPADIR	0	Unmodified	1040.5251	0.52507234	1828	P54707	ATP12A	Potassium-transporting ATPase alpha chain 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	48.445	47.781	2	0.055109	43371	160511_QHF_FH_JSI12i_1	42.109	22.632			0.047852	0.050717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.047852	0.050717	NaN	1	1	Median	50051000	46536000	3515000	0	0	0	0	0	0	0	0	0	50051000	46536000	3515000	18609	1828	17631	113809	153919	153919			1	
GGDRIPADLR	0	Unmodified	1068.5676	0.56760585	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		22.31	21.694	3	0.045841	18235	160511_QHF_FH_JSI11i_3	22.055	14.41			0.7533	0.77955	9.8704	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73252	0.8359	NaN	1	0	Median	0.77466	0.727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288720000	160570000	128150000	0	0	0	155160000	86722000	68434000	133560000	73847000	59718000	0	0	0	18610	821	17632	113810;113811	153920	153920			1	
GGDSIGETPTPGASK	1	Unmodified	1372.647	0.64703797	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	1	3	2	25.656	21.806	2	3.0301E-65	19005	160511_QHF_FH_JSI10i_1	227.48	212.81			0.88955	0.98782	17.855	7	0	Median	1.4595	1.2186	NaN	1	0	Median	0.84147	0.98782	NaN	1	0	Median	1.2373	1.2174	23.244	3	0	Median	0.85242	0.89598	0.82671	2	0	Median	762750000	346150000	416600000	209550000	80362000	129190000	171320000	91617000	79704000	185380000	79972000	105400000	196500000	94204000	102300000	18611	542	17633	113812;113813;113814;113815;113816;113817;113818	153921;153922;153923;153924;153925;153926;153927;153928;153929;153930;153931;153932	153928			12	
GGEADNLDEFLK	1	Unmodified	1306.6041	0.60411052	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.424	64.809	2	2.2505E-31	57540	160511_QHF_FH_JSI9i_1	189.66	164.81			1.0492	0.97339	15.072	4	0	Median	1.0358	0.85898	NaN	1	0	Median	0.72829	0.84257	NaN	1	0	Median	1.1205	1.103	NaN	1	0	Median	1.0628	1.1052	NaN	1	0	Median	629190000	331290000	297900000	151680000	82063000	69620000	166220000	100380000	65834000	175260000	80085000	95176000	136030000	68763000	67269000	18612	396	17634	113819;113820;113821;113822	153933;153934;153935;153936;153937;153938;153939	153939			7	
GGEATRMEEGEVYAIETFGSTGK	1	Unmodified	2418.1009	0.1009192	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	73.094	72.623	3	9.0313E-07	64032	160511_QHF_FH_JSI9i_2	69.133	61.511			0.8071	0.99636	40.283	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0882	1.3483	NaN	1	0	Median	1.6692	1.5794	NaN	1	1	Median	0.76007	0.73626	NaN	1	0	Median	110690000	42935000	67756000	18404000	0	18404000	30687000	15023000	15664000	17392000	5063800	12328000	44208000	22849000	21359000	18613	1712	17635	113823;113824;113825;113826	153940;153941;153942;153943;153944	153941			5	
GGEDKLK	2	Acetyl (K)	787.40758	0.40758296	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	15.358	8.0918	2	0.022349	6229	160513_QHF_FH_JSI10Kac_3	75.213	45.028			0.67274	0.72313	50.661	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91091	1.077	NaN	1	0	Median	0.40098	0.39385	NaN	1	0	Median	0.67274	0.72313	NaN	1	0	Median	35056000	22386000	12669000	0	0	0	10850000	5253400	5596200	12004000	9078100	2926200	12202000	8054900	4147000	18614	1990	17636	113827;113828;113829	153945;153946;153947;153948	153947	2009		4	
GGEDLRQDQR	0	Unmodified	1172.5534	0.55341235	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							2	3	2	4	6.3961	6.0564	2;3	0.0033637	3918	160511_QHF_FH_JSI12i_2	72.928	35.37			0.99305	1.1171	15.516	11	0	Median	1.55	1.3571	3.5877	2	0	Median	0.77795	0.96386	13.36	3	0	Median	1.1986	1.2046	5.5204	2	0	Median	0.95901	1.0768	9.8731	4	0	Median	1130500000	506480000	624000000	226600000	86820000	139780000	254520000	123120000	131400000	330950000	142770000	188170000	318420000	153770000	164650000	18615	2094	17637	113830;113831;113832;113833;113834;113835;113836;113837;113838;113839;113840	153949;153950;153951;153952;153953	153949			5	
GGEDTNDLQQK	1	Unmodified	1203.5368	0.53675924	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	3.85	6				1					2	1	2	2	9.6332	9.2677	2	6.0545E-09	7218	160511_QHF_FH_JSI12i_1	121.5	100.6			1.134	1.1258	49.28	4	4	Median	2.3661	1.9682	NaN	1	1	Median	0.63343	0.73684	NaN	1	1	Median	1.6393	1.5934	NaN	1	1	Median	0.78447	0.79538	NaN	1	1	Median	125070000	51652000	73423000	22568000	4372100	18196000	41396000	20535000	20861000	34097000	11052000	23045000	27014000	15693000	11321000	18616	727	17638	113841;113842;113843;113844;113845;113846;113847	153954;153955;153956;153957;153958;153959;153960	153957			7	
GGEEPLPEGLFWLLVTGHIPTEEQVSWLSK	1	Unmodified	3347.7078	0.70779432	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	100.1	91.669	3;4	4.8485E-185	52153	160513_QHF_FH_JSI11Kac_6	285.61	264.15			0.91887	0.93244	9.6986	8	0	Median	1.1405	0.9667	12.462	2	0	Median	0.89255	1.064	2.8189	2	0	Median	0.91887	0.87044	0.52242	2	0	Median	0.88152	0.92657	8.2545	2	0	Median	5874700000	3037500000	2837200000	1441100000	649870000	791280000	2465300000	1344600000	1120600000	1294400000	680360000	613990000	673940000	362630000	311310000	18617	517	17639	113848;113849;113850;113851;113852;113853;113854;113855	153961;153962;153963;153964;153965;153966;153967;153968;153969;153970;153971;153972;153973	153961			13	
GGEHEPPSR	0	Unmodified	964.43626	0.43625733	604	O94762	RECQL5	ATP-dependent DNA helicase Q5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		6.4886	6.285	3	0.0091067	4153	160511_QHF_FH_JSI11i_3	38.303	14.875			1.1672	1.1788	21.878	3	0	Median	1.8224	1.5763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1413	1.1002	9.7591	2	0	Median	NaN	NaN	NaN	0	0	Median	594370000	275210000	319170000	134810000	44951000	89859000	0	0	0	459560000	230260000	229310000	0	0	0	18618	604	17640	113856;113857;113858	153974;153975;153976	153974			3	
GGEHGPQVPLSQPPEDELDRLTK	1	Unmodified	2498.2401	0.24013029	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		63.413	62.969	3;4	5.6504E-05	55913	160511_QHF_FH_JSI11i_3	53.779	44.848			0.89241	0.8334	17.766	4	3	Median	1.3322	1.146	NaN	1	0	Median	0.65895	0.78561	NaN	1	1	Median	0.89241	0.8334	8.1131	2	2	Median	NaN	NaN	NaN	0	0	Median	232660000	120300000	112360000	44591000	19158000	25433000	18070000	11948000	6122000	170000000	89195000	80802000	0	0	0	18619	2697	17641	113859;113860;113861;113862	153977;153978;153979;153980;153981	153979			5	
GGEIQPVSVK	1	Unmodified	1012.5553	0.55530983	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.4	4	2	4		3	4	1			3	5	5	5	29.656	24.912	2	3.6689E-11	23284	160511_QHF_FH_JSI10i_1	149.72	113.33			0.9922	1.0167	14.792	18	0	Median	1.2605	1.08	4.3476	3	0	Median	0.80722	0.94481	5.4963	5	0	Median	1.0887	1.0655	18.057	5	0	Median	0.98245	1.0282	21.515	5	0	Median	18196000000	8405400000	9790500000	4496800000	2307300000	2189500000	5248900000	2446300000	2802600000	4216200000	1568200000	2647900000	4234100000	2083600000	2150500000	18620	1959	17642	113863;113864;113865;113866;113867;113868;113869;113870;113871;113872;113873;113874;113875;113876;113877;113878;113879;113880	153982;153983;153984;153985;153986;153987;153988;153989;153990;153991;153992;153993;153994;153995;153996;153997;153998;153999;154000;154001;154002;154003;154004;154005;154006;154007;154008;154009;154010	153995			29	
GGEIQPVSVKVGDK	2	Acetyl (K)	1453.7777	0.77765821	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.484					3	5					4	3	1	57.032	47.624	2;3	8.321E-07	25336	160513_QHF_FH_JSI12Kac_3	111.12	69.675			0.84804	0.96891	37.712	8	0	Median	NaN	NaN	NaN	0	0	Median	1.0495	1.2279	19.476	4	0	Median	0.63191	0.62528	8.8832	3	0	Median	0.89292	0.98455	NaN	1	0	Median	78644000	44650000	33994000	0	0	0	30005000	14621000	15383000	23232000	14703000	8528600	25407000	15325000	10082000	18621	1959	17643	113881;113882;113883;113884;113885;113886;113887;113888	154011;154012;154013;154014;154015;154016;154017;154018	154016	1974;1975		8	
GGELASAVHAYTK	1	Unmodified	1302.6568	0.65681479	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	34.532	34.422	2;3	0.00017745	29144	160511_QHF_FH_JSI12i_3	153.34	123.57			0.50413	0.51641	13.086	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50413	0.51641	13.086	2	2	Median	73648000	57312000	16335000	0	0	0	0	0	0	0	0	0	73648000	57312000	16335000	18622	4018	17644	113889;113890	154019;154020	154019			2	
GGELLVHTGFLGSSQDR	0	Unmodified	1771.8853	0.88531118	3138	Q6RW13	AGTRAP	Type-1 angiotensin II receptor-associated protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.424	58.895	3	0.00025722	49304	160511_QHF_FH_JSI10i_3	58.246	52.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18623	3138	17645	113891	154021	154021			1	
GGELVYTDSEAR	0	Unmodified	1295.5994	0.59935949	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	29.723	27.465	2	0.00022491	24384	160511_QHF_FH_JSI11i_1	78.653	62.771			1.0951	1.0296	34.402	5	1	Median	1.3468	1.1236	NaN	1	0	Median	0.79904	0.96545	NaN	1	0	Median	1.5683	1.4949	52.737	2	1	Median	0.94437	0.96421	NaN	1	0	Median	278130000	105720000	172410000	77957000	19963000	57995000	79823000	39060000	40763000	52380000	19153000	33227000	67967000	27546000	40421000	18624	2636	17646	113892;113893;113894;113895;113896;113897	154022;154023;154024;154025;154026;154027	154022			4	
GGELVYTDSEARDVFEK	1	Unmodified	1913.9007	0.90068647	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			58.475	57.588	3	0.00039026	50977	160511_QHF_FH_JSI10i_2	69.148	52.463			0.96294	1.1833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96294	1.1833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34499000	20130000	14369000	0	0	0	34499000	20130000	14369000	0	0	0	0	0	0	18625	2636	17647	113898	154028	154028			1	
GGENIYPAELEDFFHTHPK	1	Unmodified	2200.0225	0.022532941	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									1	3	83.822	83.088	4	1.426E-06	73270	160511_QHF_FH_JSI11i_2	94.384	91.419			0.86047	0.90075	29.809	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0493	1.0569	NaN	1	0	Median	0.92123	1.015	35.111	3	2	Plateau	93869000	45673000	48196000	0	0	0	0	0	0	24906000	11077000	13829000	68963000	34596000	34367000	18626	4007	17648	113899;113900;113901;113902	154029;154030;154031;154032;154033	154032			5	
GGEPDGSAR	0	Unmodified	844.36751	0.36750906	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	5										1	2	2	1.2584	1.037	2	0.0021594	533	160511_QHF_FH_JSI11i_1	75.109	52.09			0.91987	0.88047	22.386	5	2	Median	NaN	NaN	NaN	0	0	Median	0.99325	1.1055	NaN	1	0	Median	0.9387	0.89849	2.8654	2	2	Median	0.66165	0.66017	1.1596	2	0	Median	72762000	39555000	33207000	0	0	0	12899000	6577200	6322000	30260000	15335000	14925000	29603000	17643000	11960000	18627	3132	17649	113903;113904;113905;113906;113907	154034;154035;154036;154037	154035			4	
GGEPNQRPELK	1	Unmodified	1223.6258	0.62584901	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	10.789	10.837	2;3	0.0082425	8170	160511_QHF_FH_JSI12i_3	35.737	21.619			0.89468	0.87722	0.94998	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91603	0.87134	NaN	1	0	Median	0.87384	0.88313	NaN	1	0	Median	157040000	77829000	79216000	0	0	0	0	0	0	36942000	18140000	18801000	120100000	59689000	60414000	18628	2491	17650	113908;113909	154038;154039;154040	154040			3	
GGEQAIK	1	Unmodified	701.3708	0.37080353	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				2	3	2	3	5.5571	3.1287	2	0.0062112	1985	160513_QHF_FH_JSI11Kac_3	92.467	15.093			0.76061	0.78158	22.787	10	0	Median	0.98833	0.81475	23.793	2	0	Median	0.61058	0.70851	25.978	3	0	Plateau	0.70022	0.6882	29.455	2	0	Median	0.68378	0.75886	26.957	3	0	Median	7572900000	4359600000	3213200000	1529100000	759730000	769350000	2392600000	1450800000	941850000	1311600000	835030000	476550000	2339600000	1314100000	1025500000	18629	1376	17651	113910;113911;113912;113913;113914;113915;113916;113917;113918;113919	154041;154042;154043;154044;154045;154046;154047	154042			7	
GGEQINK	1	Unmodified	744.37662	0.37661719	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	5.0905	4.8133	2	0.0047315	2534	160511_QHF_FH_JSI9i_1	97.473	40.009			0.85742	0.84899	13.48	7	0	Median	1.3212	1.0943	NaN	1	0	Median	0.84943	1.0081	1.2187	2	0	Median	0.86874	0.84091	0.88107	2	0	Median	0.76797	0.79873	8.6307	2	0	Median	4743800000	2631800000	2112000000	506810000	235140000	271670000	1506800000	849260000	657500000	1586300000	888270000	698030000	1143900000	659160000	484760000	18630	3911	17652	113920;113921;113922;113923;113924;113925;113926	154048;154049;154050;154051;154052	154052			5	
GGEQINKIQQDSGCK	2	Acetyl (K)	1702.7944	0.79444726	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		39.273	30.199	2	0.035983	17447	160513_QHF_FH_JSI11Kac_3	51.774	38.346			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	959770	959770	0	0	0	0	0	0	0	959770	959770	0	0	0	0	18631	3911	17653	113927	154053	154053			1	
GGEQISR	0	Unmodified	745.37187	0.37186616	3966;4118	Q96AE4;Q96I24	FUBP1;FUBP3	Far upstream element-binding protein 1;Far upstream element-binding protein 3	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	5.4279	2.3139	2	0.010245	2929	160511_QHF_FH_JSI12i_1	66.073	13.39			0.99755	1.0987	8.5886	5	0	Median	1.3534	1.0987	NaN	1	0	Median	0.91911	1.0736	5.5553	2	0	Median	1.11	1.0895	16.126	2	0	Median	NaN	NaN	NaN	0	0	Median	3211500000	1585900000	1625600000	637180000	275630000	361550000	1276700000	676830000	599840000	1297600000	633410000	664220000	0	0	0	18632	3966;4118	17654	113928;113929;113930;113931;113932;113933	154054;154055;154056	154054			3	
GGETIKQLQER	1	Acetyl (K)	1299.6783	0.67827852	3966;3911;4118	Q96AE4;Q92945;Q96I24	FUBP1;KHSRP;FUBP3	Far upstream element-binding protein 1;Far upstream element-binding protein 2;Far upstream element-binding protein 3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				1	2	2	41.783	32.016	2	3.0726E-11	18742	160513_QHF_FH_JSI12Kac_4	139.86	103.27			0.3109	0.30295	167.81	3	1	Median	NaN	NaN	NaN	0	0	Median	0.90107	1.0643	NaN	1	0	Median	0.3109	0.30295	NaN	1	0	Median	0.035673	0.038347	NaN	1	1	Median	14421000	10479000	3942300	0	0	0	3744200	1759200	1985000	8531500	6604500	1927000	2145700	2115600	30192	18633	3966;3911;4118	17655	113934;113935;113936;113937;113938	154057;154058;154059;154060;154061	154061	2998;3046		5	
GGETIKSISQQSGAR	1	Acetyl (K)	1559.7903	0.79034816	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.468	33.332	2	0.033994	20026	160513_QHF_FH_JSI11Kac_4	67.456	32.042			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18634	3966	17656	113939	154062	154062			1	
GGETPGSEQWK	1	Unmodified	1174.5255	0.52546627	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.244	18.875	2	0.00016156	16229	160511_QHF_FH_JSI10i_1	93.111	62.037			1.5937	1.7297	27.605	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2226	1.4229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0776	2.1025	NaN	1	1	Median	66837000	28811000	38026000	0	0	0	39779000	17169000	22610000	0	0	0	27058000	11643000	15416000	18635	404	17657	113940;113941	154063;154064	154064			2	
GGETVMVNAAAGAVGSVVGQIAK	1	Unmodified	2085.0888	0.088838367	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								3	1	1	1	101.17	101.08	3	8.0319E-21	91787	160511_QHF_FH_JSI10i_1	154.65	144.31			1.0161	0.91968	13.992	6	3	Median	1.1685	0.99398	16.411	3	2	Median	0.70621	0.82829	NaN	1	0	Median	1.0979	1.0808	NaN	1	1	Median	0.8136	0.85093	NaN	1	0	Median	1308200000	699100000	609090000	440710000	208260000	232450000	392780000	239520000	153260000	234810000	124180000	110630000	239900000	127150000	112750000	18636	2581	17658	113942;113943;113944;113945;113946;113947	154065;154066;154067;154068;154069;154070;154071;154072	154068			8	
GGFAPAEK	1	Unmodified	775.38645	0.38645359	1613	P48059	LIMS1	LIM and senescent cell antigen-like-containing domain protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	15.059	13.194	2	0.0066395	11301	160511_QHF_FH_JSI12i_1	61.962	37.331			0.8049	0.91096	9.8498	5	0	Median	1.2338	1.0236	NaN	1	0	Median	0.8049	0.93294	NaN	1	0	Median	0.93049	0.91096	NaN	1	0	Median	0.77193	0.81409	2.7972	2	0	Median	559610000	294990000	264620000	98567000	36776000	61791000	168050000	96102000	71951000	140780000	65913000	74864000	152210000	96194000	56019000	18637	1613	17659	113948;113949;113950;113951;113952	154073;154074;154075;154076	154074			4	
GGFAVQAK	1	Unmodified	776.41809	0.41808807	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	18.064	17.41	2	0.0020722	14287	160511_QHF_FH_JSI12i_2	92.191	63.936			0.84816	0.89398	16.344	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0119	1.0035	NaN	1	0	Median	0.7109	0.79641	NaN	1	1	Median	340070000	193720000	146350000	0	0	0	0	0	0	210030000	108490000	101540000	130040000	85232000	44809000	18638	3723	17660	113953;113954	154077;154078	154077			2	
GGFCNFMHLK	1	Unmodified	1209.5423	0.54231908	956	P0DN76;Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	55.602	54.869	2;3	4.8382E-06	48337	160511_QHF_FH_JSI11i_3	82.749	74.236			1.0234	0.98354	30.34	7	1	Median	1.0234	0.8364	NaN	1	0	Median	0.73541	0.83088	23.853	2	0	Median	1.3428	1.2534	50.513	2	1	Median	1.0914	1.1394	8.6168	2	0	Median	1337700000	672240000	665490000	114670000	61888000	52785000	193970000	111570000	82404000	423830000	210560000	213260000	605260000	288220000	317040000	18639	956	17661	113955;113956;113957;113958;113959;113960;113961	154079;154080;154081;154082;154083;154084;154085;154086	154080			7	
GGFDGEYQDDSLDLLR	0	Unmodified	1798.801	0.80097243	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	77.843	77.412	2	3.3071E-07	70536	160511_QHF_FH_JSI12i_1	134.98	109.59			0.84494	0.83879	26.048	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0553	1.0084	NaN	1	1	Median	0.67653	0.69769	NaN	1	0	Median	90301000	42315000	47985000	0	0	0	0	0	0	48784000	23302000	25482000	41517000	19013000	22503000	18640	2883	17662	113962;113963	154087;154088	154088			2	
GGFDWNLVFK	1	Unmodified	1181.5869	0.58694431	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	3	3	2	92.429	89.129	2	4.7318E-16	42448	160513_QHF_FH_JSI12Kac_6	163.32	146.54			0.89975	0.92155	9.87	11	6	Median	1.1569	0.99389	4.3705	3	0	Median	0.72139	0.8553	6.4138	3	2	Plateau	0.95731	0.93047	7.4736	3	3	Plateau	0.74468	0.80155	8.5166	2	1	Median	775340000	421390000	353940000	126610000	56046000	70564000	185550000	115880000	69675000	250330000	125930000	124400000	212850000	123540000	89303000	18641	2294	17663	113964;113965;113966;113967;113968;113969;113970;113971;113972;113973;113974	154089;154090;154091;154092;154093;154094;154095;154096;154097;154098;154099;154100;154101;154102;154103;154104;154105;154106;154107;154108;154109;154110	154108			22	
GGFLPPEEIK	1	Unmodified	1085.5757	0.57571092	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	55.641	54.98	2	0.0019923	49930	160511_QHF_FH_JSI12i_1	62.546	48.967			0.8163	0.872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8163	0.872	NaN	1	0	Median	22988000	12810000	10178000	0	0	0	0	0	0	0	0	0	22988000	12810000	10178000	18642	4628	17664	113975;113976	154111;154112	154111			2	
GGFLYLNR	0	Unmodified	938.4974	0.49740102	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	12.9	5.3			2					2	5	4	3	1	1	59.083	51.578	2	0.0015258	28314	160513_QHF_FH_JSI10Kac_6	98.415	67.746			0.8778	0.84608	24.367	8	4	Median	0.79698	0.65733	29.77	4	3	Linear	0.69703	0.80206	14.367	2	1	Median	1.2099	1.2159	NaN	1	0	Median	0.72663	0.8063	NaN	1	0	Median	227000000	120060000	106940000	94551000	50926000	43625000	86459000	46733000	39726000	36004000	16499000	19506000	9984200	5904700	4079500	18643	5330	17665	113977;113978;113979;113980;113981;113982;113983;113984;113985	154113;154114;154115;154116;154117;154118;154119;154120;154121	154121			9	
GGFVLLDGETFEVK	1	Unmodified	1509.7715	0.7715102	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.663	5	4	1							4	2	2	2	91.296	90.726	2	4.2483E-11	78356	160511_QHF_FH_JSI12i_2	155	136.33			0.9877	0.87218	23.492	10	2	Median	1.0083	0.84587	28.677	4	2	Median	0.87599	1.0629	29.702	2	0	Median	0.96188	0.95911	17.388	2	0	Median	0.87461	0.95654	20.429	2	0	Median	671550000	337640000	333920000	133650000	61032000	72618000	183210000	98284000	84921000	192130000	93149000	98983000	162570000	85170000	77398000	18644	2374	17666	113986;113987;113988;113989;113990;113991;113992;113993;113994;113995	154122;154123;154124;154125;154126;154127;154128;154129;154130;154131;154132;154133;154134;154135;154136;154137;154138;154139	154125			17	
GGGAEEATEAGR	0	Unmodified	1103.4843	0.48432973	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		6.8743	6.5441	2	2.42E-07	4429	160511_QHF_FH_JSI10i_1	130.98	94.601			1.0248	1.1054	5.7036	3	1	Plateau	1.369	1.1054	NaN	1	0	Median	0.92526	1.1012	NaN	1	0	Median	1.0248	0.99959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	169400000	83068000	86330000	60819000	26552000	34266000	55153000	27968000	27185000	53427000	28548000	24879000	0	0	0	18645	5011	17667	113996;113997;113998	154140;154141;154142;154143	154141			4	
GGGAFVQNSQPVAVR	0	Unmodified	1485.7688	0.76882486	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	38.035	37.291	2	2.7843E-137	31892	160511_QHF_FH_JSI11i_2	288.11	258.64			0.97403	1.0558	13.644	11	0	Median	1.3922	1.1831	15.342	2	0	Median	0.83726	0.99123	14.509	3	0	Plateau	1.0433	0.84337	12.587	3	0	Plateau	0.98724	0.97565	11.499	3	0	Plateau	1212400000	608200000	604210000	160100000	70825000	89274000	327300000	163890000	163410000	415150000	214640000	200510000	309860000	158850000	151010000	18646	1400	17668	113999;114000;114001;114002;114003;114004;114005;114006;114007;114008;114009	154144;154145;154146;154147;154148;154149;154150;154151;154152;154153;154154;154155;154156;154157;154158;154159;154160;154161;154162	154158			18	
GGGALSAVAATK	1	Unmodified	1001.5506	0.55055881	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		6	4					2		3	3	4	2	28.087	26.519	2	1.1406E-31	22236	160511_QHF_FH_JSI12i_3	193.52	120.26			0.96193	1.0854	33.692	11	6	Median	1.8164	1.4806	37.193	3	1	Plateau	0.96193	1.0854	52.943	3	2	Median	1.2028	1.1293	24.537	3	2	Median	0.90135	0.98032	1.8357	2	1	Median	850160000	439410000	410750000	124370000	52381000	71989000	218260000	113730000	104530000	251780000	137920000	113860000	255750000	135390000	120370000	18647	1929	17669	114010;114011;114012;114013;114014;114015;114016;114017;114018;114019;114020;114021	154163;154164;154165;154166;154167;154168;154169;154170;154171;154172;154173;154174;154175;154176;154177;154178;154179;154180;154181	154181			19	
GGGAYYLISR	0	Unmodified	1055.54	0.53999412	1840	P55011;Q13621	SLC12A2;SLC12A1	Solute carrier family 12 member 2;Solute carrier family 12 member 1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			51.536	42.927	2	0.0044476	23656	160513_QHF_FH_JSI10Kac_6	76.345	59.805			0.68406	0.77909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68406	0.77909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12928000	6907500	6020800	0	0	0	12928000	6907500	6020800	0	0	0	0	0	0	18648	1840	17670	114022	154182;154183	154183			2	
GGGDIRDVNTNSENWAVVK	1	Unmodified	2029.9817	0.98173076	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	52.221	51.055	3	1.2674E-07	45039	160511_QHF_FH_JSI10i_2	94.01	82.054			0.6417	0.74376	30.666	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48772	0.59877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84429	0.92385	NaN	1	1	Median	40601000	19708000	20892000	0	0	0	21347000	11504000	9843100	0	0	0	19253000	8204000	11049000	18649	4750	17671	114023;114024;114025;114026	154184;154185;154186;154187	154187			4	
GGGDLPNSQEALQK	1	Unmodified	1412.6896	0.68957148	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	30.294	29.695	2	1.561E-05	26595	160511_QHF_FH_JSI12i_1	142.1	131.72			0.6699	0.74894	21.383	4	0	Linear	1.4493	1.1855	NaN	1	0	Median	0.75404	0.91314	NaN	1	0	Median	0.99612	0.96663	NaN	1	0	Median	0.69346	0.70534	NaN	1	0	Median	311400000	153440000	157960000	72894000	34657000	38238000	80594000	39202000	41392000	75772000	39822000	35949000	82144000	39762000	42382000	18650	739	17672	114027;114028;114029;114030;114031	154188;154189;154190;154191;154192;154193;154194;154195	154190			8	
GGGDVLEPVSSDSLSTK	1	Unmodified	1646.7999	0.79990979	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.85	5				1	3				1	2	3	3	55.828	51.916	2	2.3325E-10	46930	160511_QHF_FH_JSI11i_1	143.31	107.89			1.0036	0.97357	15.576	8	4	Median	1.2677	1.0142	NaN	1	0	Median	0.74296	0.86503	NaN	1	0	Median	1.0643	1.0525	15.374	3	3	Median	0.89379	0.93453	20.821	3	1	Median	1056100000	528790000	527310000	251760000	102950000	148800000	240960000	139050000	101920000	396110000	193650000	202470000	167260000	93138000	74125000	18651	2902	17673	114032;114033;114034;114035;114036;114037;114038;114039;114040	154196;154197;154198;154199;154200;154201;154202;154203;154204;154205;154206;154207;154208;154209	154197			14	
GGGEGNVDETGNNPSVSLK	1	Unmodified	1829.8391	0.83914885	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.578	32.239	2	0.00035877	28780	160511_QHF_FH_JSI10i_1	63.894	52.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18652	1581	17674	114041	154210	154210			1	
GGGELGLQWHADGR	0	Unmodified	1451.6906	0.69057454	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	43.525	43.292	2	5.2719E-06	36935	160511_QHF_FH_JSI12i_3	87.001	67.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18653	2835	17675	114042	154211	154211			1	
GGGEQETQELASK	1	Unmodified	1332.6157	0.61573784	4213	Q96QR8	PURB	Transcriptional activator protein Pur-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.757	15.299	2	3.0011E-05	12746	160511_QHF_FH_JSI10i_1	117.98	102.82			1.0733	0.94835	33.256	4	2	Median	1.0122	0.82744	NaN	1	1	Median	0.63752	0.75882	NaN	1	1	Median	1.1381	1.0869	NaN	1	0	Median	1.5302	1.5889	NaN	1	0	Median	187580000	90444000	97138000	38520000	21733000	16788000	43631000	25553000	18078000	30686000	11562000	19124000	74745000	31596000	43149000	18654	4213	17676	114043;114044;114045;114046	154212;154213;154214;154215	154214			4	
GGGEVIVR	0	Unmodified	785.43955	0.43955179	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	14.301	13.517	2	0.0083499	11014	160511_QHF_FH_JSI9i_2	57.047	21.752			1.1472	1.1116	32.095	2	0	Median	1.6026	1.3948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82122	0.8859	NaN	1	0	Median	86168000	40372000	45796000	42351000	18788000	23563000	0	0	0	0	0	0	43818000	21584000	22234000	18655	134	17677	114047;114048	154216;154217	154217			2	
GGGEYGETWHK	1	Unmodified	1219.5258	0.52580062	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	16.54	16.591	2;3	0.00044268	13215	160511_QHF_FH_JSI12i_3	79.974	65.307			0.98654	0.99372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98654	0.99372	NaN	1	0	Median	41941000	20157000	21784000	0	0	0	0	0	0	0	0	0	41941000	20157000	21784000	18656	1615	17678	114049;114050	154218;154219	154218			1	
GGGFFSGLGGK	1	Unmodified	982.48723	0.48723027	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	54.869	53.75	2	0.00040714	44204	160511_QHF_FH_JSI9i_3	71.451	56.012			0.88715	0.8931	60.376	3	0	Plateau	1.1387	0.91007	NaN	1	0	Median	2.3018	2.565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88715	0.8931	NaN	1	0	Median	169540000	83621000	85922000	48468000	17926000	30542000	39931000	18585000	21345000	0	0	0	81144000	47110000	34034000	18657	1443	17679	114051;114052;114053	154220	154220			1	
GGGFFSGLGGKPSQDAANK	2	Unmodified	1793.8697	0.86966111	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		46.749	45.691	3	1.1697E-10	40192	160511_QHF_FH_JSI11i_3	112.16	106.04			0.89046	0.79264	4.7925	3	0	Median	0.98533	0.79264	NaN	1	0	Median	0.68382	0.78896	NaN	1	0	Median	0.89046	0.85916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	302620000	165010000	137610000	59178000	33144000	26034000	68471000	38850000	29621000	174970000	93016000	81956000	0	0	0	18658	1443	17680	114054;114055;114056	154221;154222;154223;154224;154225	154222			5	
GGGFGGNDNFGR	0	Unmodified	1153.4901	0.49008381	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	25.896	25.295	2	9.3621E-06	21073	160511_QHF_FH_JSI12i_3	119.22	66.645			0.96079	0.91498	7.2875	6	0	Median	1.1012	0.92759	NaN	1	0	Median	0.73354	0.89743	NaN	1	0	Median	1.0661	1.0227	3.5598	2	0	Median	0.8515	0.88296	3.1027	2	0	Median	269510000	140860000	128650000	40225000	20938000	19287000	44109000	26674000	17435000	104430000	50346000	54088000	80739000	42900000	37840000	18659	936	17681	114057;114058;114059;114060;114061;114062	154226;154227;154228;154229;154230	154230			3	
GGGFLPMTPMAAAPEGNVK	1	Unmodified	1843.8961	0.89607556	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										2	2	77.762	77.437	2	0.00063781	70418	160511_QHF_FH_JSI11i_1	64.65	52.731			1.5285	1.4745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5285	1.4745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19563000	6356400	13207000	0	0	0	0	0	0	19563000	6356400	13207000	0	0	0	18660	2549	17682	114063;114064;114065;114066	154231;154232;154233;154234	154231			4	
GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK	1	Unmodified	3372.3848	0.38481779	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	56.982	56.455	3	6.9123E-24	50912	160511_QHF_FH_JSI10i_1	94.188	90.427			0.86191	0.9456	35.659	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65249	0.73485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1385	1.2168	NaN	1	1	Median	56198000	32607000	23591000	0	0	0	33560000	22970000	10589000	0	0	0	22638000	9636600	13001000	18661	910	17683	114067;114068	154235;154236;154237	154237			3	
GGGGGGPGEGFDVAK	1	Unmodified	1260.5735	0.57347909	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.5	4.72	1					2	3			1		3	2	38.555	29.491	2	3.7219E-83	25676	160511_QHF_FH_JSI9i_1	216.91	162.48			0.68847	0.74387	55.864	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4754	1.4234	58.602	2	1	Median	0.68847	0.74387	NaN	1	0	Median	7145300	3197100	3948200	0	0	0	0	0	0	4501900	1682000	2819900	2643400	1515100	1128300	18662	5505	17684	114069;114070;114071;114072;114073;114074	154238;154239;154240;154241;154242;154243	154242			6	
GGGGGQDNGLEGLGNDSR	0	Unmodified	1658.7245	0.72445344	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	30.465	27.139	2	9.5117E-138	24072	160511_QHF_FH_JSI11i_1	290.39	257.87			0.9709	0.93927	12.101	6	0	Median	1.1105	0.90463	NaN	1	0	Median	0.77996	0.90523	4.0389	2	0	Median	1.1296	1.1234	11.892	2	0	Median	0.89557	0.94714	NaN	1	0	Median	1097100000	557530000	539540000	279420000	133060000	146360000	349350000	196510000	152840000	257820000	123130000	134690000	210490000	104830000	105660000	18663	910	17685	114075;114076;114077;114078;114079;114080	154244;154245;154246;154247;154248;154249;154250;154251;154252;154253	154244			10	
GGGGNFGPGPGSNFR	0	Unmodified	1376.6222	0.62216062	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.54	3	4	5				2	4	4	4	6	5	7	37.594	32.834	2	7.2023E-98	26968	160511_QHF_FH_JSI9i_3	259.55	238.08			0.93285	1.0296	13.418	22	2	Median	1.2602	1.0611	3.5577	4	0	Median	0.90055	1.0779	7.1993	6	0	Median	1.1204	1.078	4.6053	5	0	Median	0.78966	0.86104	9.734	7	2	Median	9315000000	4572700000	4742200000	4033600000	1878700000	2154900000	2907400000	1493200000	1414100000	1530800000	730180000	800570000	843270000	470600000	372670000	18664	1212	17686	114081;114082;114083;114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094;114095;114096;114097;114098;114099;114100;114101;114102	154254;154255;154256;154257;154258;154259;154260;154261;154262;154263;154264;154265;154266;154267;154268;154269;154270;154271;154272;154273;154274;154275;154276;154277;154278;154279;154280;154281;154282;154283;154284;154285;154286;154287;154288;154289;154290;154291;154292;154293;154294;154295;154296	154271			43	
GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR	0	Unmodified	2269.0584	0.058417951	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.758	29.162	2	2.0518E-104	25934	160511_QHF_FH_JSI11i_1	240.79	220.13			0.76477	0.81122	36.001	4	1	Median	1.4183	1.1577	NaN	1	0	Median	0.80365	0.92888	NaN	1	0	Median	0.72777	0.70847	NaN	1	0	Median	0.49903	0.50246	NaN	1	1	Median	106940000	59844000	47099000	17690000	7098500	10592000	29280000	14195000	15085000	34642000	20136000	14506000	25332000	18415000	6916700	18665	3911	17687	114103;114104;114105;114106	154297;154298;154299;154300;154301;154302	154297			6	
GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK	1	Unmodified	2397.1534	0.15338097	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0.816	2	2	2							2	2	2		23.933	23.01	3	2.7976E-13	19977	160511_QHF_FH_JSI10i_2	81.888	77.817			0.88984	0.93051	13.123	5	2	Median	1.0082	0.8403	15.42	2	1	Median	0.69719	0.82451	17.104	2	0	Median	0.98592	0.95666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112470000	61284000	51182000	37152000	18205000	18948000	57106000	35917000	21189000	18207000	7162000	11045000	0	0	0	18666	3911	17688	114107;114108;114109;114110;114111;114112	154303;154304;154305;154306;154307;154308;154309;154310;154311;154312;154313	154313			11	
GGGGYTCQSGSGWDEFTK	1	Unmodified	1892.7635	0.76354106	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.829	51.333	2	7.8719E-41	46248	160511_QHF_FH_JSI10i_1	200.13	191.61			0.95059	0.92968	25.429	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73398	0.86829	NaN	1	0	Median	0.95059	0.92968	NaN	1	0	Median	1.3536	1.3901	NaN	1	0	Median	150170000	75498000	74672000	0	0	0	45784000	25692000	20092000	56898000	31707000	25191000	47487000	18099000	29388000	18667	1085	17689	114113;114114;114115;114116	154314;154315;154316;154317;154318;154319;154320	154319			7	
GGGHVAQIYAIR	0	Unmodified	1240.6677	0.66765425	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.51		6	8					1	8	6	7	5	5	34.611	30.514	2;3	7.7613E-50	17098	160513_QHF_FH_JSI10Kac_6	210.01	180.92			0.90584	0.96527	39.418	23	3	Median	1.3195	1.1117	64.245	6	1	Median	0.8111	0.98997	43.513	7	0	Median	1.0258	0.96527	10.889	5	1	Median	0.80793	0.86127	15.004	5	1	Median	11642000000	5777300000	5865100000	5378200000	2413400000	2964800000	4240300000	2337600000	1902800000	1268400000	611550000	656820000	755520000	414840000	340670000	18668	1987	17690	114117;114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132;114133;114134;114135;114136;114137;114138;114139	154321;154322;154323;154324;154325;154326;154327;154328;154329;154330;154331;154332;154333;154334;154335;154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347;154348;154349;154350;154351;154352;154353;154354;154355;154356;154357;154358;154359;154360;154361;154362;154363;154364;154365;154366	154361			46	
GGGIAHKDLDR	1	Acetyl (K)	1179.5996	0.59963426	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		26.391	16.925	2	0.037324	11064	160513_QHF_FH_JSI11Kac_5	64.04	43.139			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18669	212	17691	114140	154367	154367			1	
GGGIDPTVK	1	Unmodified	842.44978	0.44978213	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			17.625	16.95	2	0.0094738	14104	160511_QHF_FH_JSI9i_1	51.066	15.621			0.66909	0.6652	39.378	2	0	Median	1.0736	0.87878	NaN	1	0	Median	0.41697	0.50353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203640000	119340000	84308000	123980000	52165000	71814000	79665000	67171000	12494000	0	0	0	0	0	0	18670	3736	17692	114141;114142	154368	154368			1	
GGGKDVSAQATGK	2	Acetyl (K)	1216.6048	0.60477922	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	19.293	12.179	2	0.0012559	6837	160513_QHF_FH_JSI12Kac_2	79.693	68.864			0.79192	0.8803	34.009	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96802	1.1196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64785	0.69214	NaN	1	0	Median	6983600	3358300	3625300	0	0	0	3743100	1668900	2074200	0	0	0	3240400	1689400	1551100	18671	1664	17693	114143;114144	154369;154370;154371	154370	1691		3	
GGGLFLLAGPPASVETLGPR	0	Unmodified	1908.0469	0.046897198	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	2	2	1	99.323	97.668	2;3	3.3555E-11	83502	160511_QHF_FH_JSI10i_3	132.47	99.526			1.129	1.0267	21.391	6	1	Median	1.3404	1.1163	9.3023	2	1	Median	0.69708	0.80652	NaN	1	0	Median	1.0956	1.0469	38.372	2	0	Median	1.003	1.0084	NaN	1	0	Median	290810000	137330000	153480000	76719000	29484000	47235000	70333000	44089000	26245000	86933000	38493000	48440000	56829000	25266000	31563000	18672	4417	17694	114145;114146;114147;114148;114149;114150;114151	154372;154373;154374;154375;154376;154377;154378;154379	154374			6	
GGGNQVSLLNVVMDLKK	2	Unmodified	1770.9662	0.96620404	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		95.889	95.344	3	1.1598E-06	79475	160511_QHF_FH_JSI10i_3	105	87.78			0.98261	0.81584	20.331	3	1	Median	0.98261	0.81584	NaN	1	0	Median	0.59011	0.68936	NaN	1	0	Median	1.1176	1.0333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91800000	47361000	44439000	22634000	12173000	10460000	25001000	13900000	11101000	44165000	21287000	22878000	0	0	0	18673	2578	17695	114152;114153;114154	154380;154381;154382;154383;154384	154382			5	
GGGPAGAGGEAPAALR	0	Unmodified	1307.6582	0.65821178	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		26.738	26.547	2	1.9373E-07	23502	160511_QHF_FH_JSI10i_1	96.745	61.521			4.9622	4.8041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9622	4.8041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	542200000	43561000	498630000	0	0	0	0	0	0	542200000	43561000	498630000	0	0	0	18674	2921	17696	114155;114156	154385;154386	154386			2	
GGGPGPGDPPPSETHK	1	Unmodified	1485.6848	0.68482046	966	P10301	RRAS	Ras-related protein R-Ras	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.29	9.9093	3	0.00023468	7604	160511_QHF_FH_JSI11i_1	58.885	54.084			1.071	1.0599	7.0083	4	0	Median	1.3205	1.0907	NaN	1	0	Median	0.80249	0.95509	NaN	1	0	Median	1.143	1.1184	NaN	1	0	Median	1.0035	1.03	NaN	1	0	Median	278250000	140790000	137460000	53515000	26941000	26574000	76166000	43570000	32595000	83515000	39558000	43957000	65058000	30721000	34336000	18675	966	17697	114157;114158;114159;114160	154387;154388;154389	154387			3	
GGGPLILLDLNDENSNQSFHSEGSLQK	1	Unmodified	2868.389	0.38897937	3773	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	86.09	85.845	3	1.1477E-07	74504	160511_QHF_FH_JSI12i_3	66.138	63.489			0.88108	0.87923	7.4337	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.62253	0.77347	NaN	1	1	Median	0.91684	0.85759	NaN	1	0	Median	0.88108	0.89351	NaN	1	0	Median	76427000	41563000	34864000	0	0	0	10660000	6955500	3704700	31314000	15223000	16091000	34453000	19385000	15069000	18676	3773	17698	114161;114162;114163	154390;154391;154392;154393;154394;154395;154396	154395			7	
GGGPMGPGSGPNLR	0	Unmodified	1252.5983	0.59825406	947	P0CG12	CHTF8	Chromosome transmission fidelity protein 8 homolog isoform 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								1	2			29.293	28.253	2	0.00035261	24718	160511_QHF_FH_JSI10i_2	70.977	59.826			1.5496	1.3117	NaN	1	1	Median	1.5496	1.3117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9769700	4585000	5184700	9769700	4585000	5184700	0	0	0	0	0	0	0	0	0	18677	947	17699	114164;114165;114166	154397;154398;154399	154399			3	
GGGPPREDVGAPLVTPSLLQMVR	0	Unmodified	2345.2525	0.25254965	5196	Q9P206	KIAA1522	Uncharacterized protein KIAA1522	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			92.551	91.492	3	0.00035015	74938	160511_QHF_FH_JSI9i_3	45.784	41.756			0.75276	0.75951	53.936	2	1	Median	1.3271	1.1122	NaN	1	0	Median	0.42698	0.51868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18446000	10327000	8118700	12394000	5462500	6931900	6051500	4864700	1186800	0	0	0	0	0	0	18678	5196	17700	114167;114168	154400;154401	154401			2	
GGGPQAQSHGEAR	0	Unmodified	1250.5752	0.57521043	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			4.6634	4.2564	2	0.0033615	2235	160511_QHF_FH_JSI10i_2	95.618	81.799			1.0716	1.3577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0716	1.3577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41017000	25364000	15653000	0	0	0	41017000	25364000	15653000	0	0	0	0	0	0	18679	3223	17701	114169	154402	154402			0	
GGGPSALWEITWER	0	Unmodified	1557.7576	0.75759147	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.578	77.953	2	0.028032	43360	160513_QHF_FH_JSI10Kac_6	61.194	35.075			0.44475	0.51333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.44475	0.51333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53571000	27078000	26493000	0	0	0	53571000	27078000	26493000	0	0	0	0	0	0	18680	3838	17702	114170	154403	154403			0	
GGGPTSSEQIMK	1	Unmodified	1190.5601	0.56013721	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.956	20.441	2	2.4892E-07	17635	160511_QHF_FH_JSI10i_1	152.04	113.74			0.92403	0.83099	26.679	4	1	Median	0.85827	0.69402	NaN	1	0	Median	0.99483	1.1551	NaN	1	0	Median	1.0105	0.99498	NaN	1	1	Median	0.66061	0.67408	NaN	1	0	Median	734710000	377040000	357670000	180460000	80267000	100190000	198240000	111300000	86940000	180710000	85975000	94738000	175300000	99501000	75803000	18681	2256	17703	114171;114172;114173;114174	154404;154405;154406;154407;154408	154407			5	
GGGPTSSEQIMK	1	Oxidation (M)	1206.5551	0.55505184	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	20.922	20.43	2	0.0027046	17883	160511_QHF_FH_JSI12i_1	81.799	69.563			0.54808	0.56493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54808	0.56493	NaN	1	1	Median	51771000	32878000	18894000	0	0	0	0	0	0	0	0	0	51771000	32878000	18894000	18682	2256	17703	114175	154409	154409		1867	1	
GGGQIIPTAR	0	Unmodified	968.54033	0.54032847	1033;2609	P13639;Q15029	EEF2;EFTUD2	Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.17	4	4	4			5	3	4	2	6	6	7	7	30.049	25.265	2	9.859E-34	21049	160511_QHF_FH_JSI12i_3	201.07	161.01			0.9893	1.0397	8.8215	23	4	Median	1.3122	1.1083	7.7033	6	2	Median	0.9269	1.1115	4.3547	5	0	Median	1.0587	1.0374	5.2631	6	1	Median	0.85285	0.92882	7.6565	6	1	Median	22569000000	11192000000	11377000000	4356500000	1888300000	2468200000	5141800000	2704700000	2437200000	7524500000	3636900000	3887600000	5545800000	2962000000	2583800000	18683	1033;2609	17704	114176;114177;114178;114179;114180;114181;114182;114183;114184;114185;114186;114187;114188;114189;114190;114191;114192;114193;114194;114195;114196;114197;114198;114199;114200;114201	154410;154411;154412;154413;154414;154415;154416;154417;154418;154419;154420;154421;154422;154423;154424;154425;154426;154427;154428;154429;154430;154431;154432;154433;154434;154435;154436;154437;154438;154439;154440;154441;154442;154443;154444;154445;154446;154447;154448;154449;154450;154451;154452;154453;154454;154455;154456;154457;154458;154459;154460;154461;154462;154463;154464	154464			55	
GGGQLDLLGVSLASLKK	2	Unmodified	1654.9618	0.96177059	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	90.24	89.67	3	0.0002105	77734	160511_QHF_FH_JSI12i_3	71.558	67.717			0.78846	0.88946	16.366	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66015	0.79226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94171	0.99858	NaN	1	1	Median	28909000	17767000	11143000	0	0	0	7858900	4653100	3205800	0	0	0	21050000	13113000	7937000	18684	3777	17705	114202;114203	154465;154466	154466			2	
GGGQSVQFTDIETLK	1	Unmodified	1578.789	0.78895118	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	64.126	63.076	2	0.0003198	55990	160511_QHF_FH_JSI9i_1	98.105	74.254			1.6186	1.3208	NaN	1	1	Median	1.6186	1.3208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14743000	3864500	10879000	14743000	3864500	10879000	0	0	0	0	0	0	0	0	0	18685	2186	17706	114204;114205;114206	154467;154468;154469	154469			3	
GGGSAAAAAAAAASGGAGSDNSVEHSDYR	0	Unmodified	2534.1018	0.10179891	1496	P40424	PBX1	Pre-B-cell leukemia transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		37.606	36.735	3	6.4943E-15	32304	160511_QHF_FH_JSI10i_2	93.446	81.481			1.003	1.069	30.4	4	4	Median	1.7365	1.5331	NaN	1	1	Median	0.69014	0.84772	4.5507	2	2	Median	1.3972	1.3054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70145000	33953000	36192000	16510000	5853700	10656000	33801000	22554000	11247000	19835000	5545200	14290000	0	0	0	18686	1496	17707	114207;114208;114209;114210	154470;154471;154472;154473	154473			4	
GGGTGGPNHPPAPR	0	Unmodified	1270.6167	0.61668131	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				8.1713	7.6952	3	0.022917	5564	160511_QHF_FH_JSI9i_2	22.911	16.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18687	1628	17708	114211	154474	154474			1	
GGGTLCAQLPALWK	1	Unmodified	1470.7653	0.76531938	92	O00115	DNASE2	Deoxyribonuclease-2-alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		82.29	81.677	2	3.5357E-06	71835	160511_QHF_FH_JSI11i_2	121.6	107.14			0.49719	0.48777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49719	0.48777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13198000	9863600	3334400	0	0	0	0	0	0	13198000	9863600	3334400	0	0	0	18688	92	17709	114212	154475	154475			1	
GGGVGGFLPAMK	1	Unmodified	1089.5641	0.56410038	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	1	3	2	63.449	62.829	2	4.0847E-16	54131	160511_QHF_FH_JSI12i_3	163.99	155.21			1.109	1.1559	20.339	7	1	Median	1.3978	1.1881	NaN	1	0	Median	1.0284	1.2571	NaN	1	0	Median	1.2105	1.189	29.781	3	1	Plateau	1.0736	1.1505	0.66928	2	0	Median	1694300000	823340000	871010000	158910000	45379000	113530000	161720000	86148000	75573000	715680000	347000000	368690000	658030000	344820000	313220000	18689	5596	17710	114213;114214;114215;114216;114217;114218;114219;114220	154476;154477;154478;154479;154480;154481;154482;154483	154483			7	
GGGVGGFLPAMK	1	Oxidation (M)	1105.559	0.559015	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	47.091	46.85	2	0.0096093	39987	160511_QHF_FH_JSI12i_3	71.379	50.679			2.4779	2.5205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4779	2.5205	NaN	1	1	Median	75324000	24288000	51037000	0	0	0	0	0	0	0	0	0	75324000	24288000	51037000	18690	5596	17710	114221	154484	154484		2703	1	
GGGVTNLLWSPDGSK	1	Unmodified	1486.7416	0.74160705	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	69.738	68.647	2	8.7234E-05	59062	160511_QHF_FH_JSI12i_2	110.08	87.198			0.74927	0.71101	19.377	2	0	Median	0.74223	0.61997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75638	0.81542	NaN	1	0	Median	41319000	21333000	19986000	25198000	13390000	11808000	0	0	0	0	0	0	16121000	7943300	8178000	18691	4956	17711	114222;114223	154485	154485			1	
GGHDIILAAFDNFK	1	Unmodified	1516.7674	0.76742787	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.934	84.848	3	0.00022389	73716	160511_QHF_FH_JSI12i_3	67.234	47.396			1.7843	1.7305	10.156	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9326	1.8594	NaN	1	0	Median	1.6473	1.6106	NaN	1	0	Median	42545000	13354000	29191000	0	0	0	0	0	0	9786100	3395400	6390700	32759000	9958700	22800000	18692	697	17712	114224;114225	154486;154487;154488	154487			2	
GGHDILVR	0	Unmodified	865.477	0.47699993	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							1	3	4	4	14.11	13.692	2;3	0.0012719	10409	160511_QHF_FH_JSI12i_3	108.09	17.311			0.8831	0.95474	15.596	5	1	Median	NaN	NaN	NaN	0	0	Median	0.8831	1.0962	NaN	1	0	Median	0.85902	0.8362	21.654	2	0	Median	0.88823	0.93249	3.3347	2	1	Median	1165500000	305380000	860090000	64862000	0	64862000	133430000	29771000	103650000	450420000	135900000	314530000	516760000	139710000	377050000	18693	5708	17713	114226;114227;114228;114229;114230;114231;114232;114233;114234;114235;114236;114237	154489;154490;154491;154492;154493;154494;154495;154496;154497;154498;154499;154500;154501	154501			13	
GGHFAAFEEPELLAQDIR	0	Unmodified	1998.9799	0.97993985	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			83.308	82.701	3	1.3724E-05	72924	160511_QHF_FH_JSI9i_2	55.912	46.748			1.9315	1.6227	NaN	1	0	Median	1.9315	1.6227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22892000	6843200	16049000	22892000	6843200	16049000	0	0	0	0	0	0	0	0	0	18694	862	17714	114238;114239	154502;154503	154502			2	
GGHFAAFEEPELLAQDIRK	1	Unmodified	2127.0749	0.074902863	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							2	5	1		76.431	75.356	3;4	3.1511E-16	63128	160511_QHF_FH_JSI10i_3	149.57	139.99			0.98858	1.0384	23.827	8	2	Median	1.6708	1.4062	34.141	2	0	Median	0.82142	0.97617	16.049	5	2	Median	0.92375	0.88405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	781790000	370000000	411790000	80166000	32018000	48148000	403730000	213080000	190640000	297900000	124900000	173000000	0	0	0	18695	862	17715	114240;114241;114242;114243;114244;114245;114246;114247	154504;154505;154506;154507;154508;154509;154510;154511;154512;154513;154514;154515;154516	154509			12	
GGHGAASPSEKGAHPSGGADDVAK	2	Acetyl (K)	2201.0097	0.0097364235	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	0	1		By MS/MS			15	0								1			1			22.103	12.968	4	0.00081718	8267	160513_QHF_FH_JSI10Kac_5	53.059	43.479			1.0269	1.2217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0269	1.2217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3866900	1711500	2155400	0	0	0	3866900	1711500	2155400	0	0	0	0	0	0	18696	2252	17716	114248	154517	154517	2355		1	
GGHMDDGGYSMNFNMSSSR	0	Unmodified	2048.7775	0.77749334	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	2	2	2	2	48.141	47.639	2;3	8.7319E-25	42065	160511_QHF_FH_JSI10i_2	171.71	168.42			1.1081	1.1732	13.639	6	0	Median	1.3844	1.1988	NaN	1	0	Median	0.9759	1.204	NaN	1	0	Median	1.2153	1.1704	3.114	2	0	Median	0.93861	0.98746	21.605	2	0	Median	554400000	273520000	280890000	106530000	45487000	61044000	81857000	41950000	39907000	211130000	96027000	115100000	154890000	90055000	64838000	18697	1474	17717	114249;114250;114251;114252;114253;114254;114255;114256	154518;154519;154520;154521;154522;154523;154524;154525;154526;154527;154528;154529	154524			12	
GGHQNNYKPY	1	Unmodified	1176.5312	0.53122035	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	8.8238	8.8726	2;3	4.6533E-05	6244	160511_QHF_FH_JSI12i_3	107.66	83.51			0.7566	0.76214	12.481	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8725	0.81409	20.587	2	0	Median	0.75471	0.76214	0.26338	2	0	Median	276310000	140130000	136180000	0	0	0	0	0	0	113390000	55357000	58038000	162910000	84769000	78142000	18698	4308	17718	114257;114258;114259;114260	154530;154531;154532	154531			3	
GGHQNNYKPY	1	Acetyl (K)	1218.5418	0.54178503	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			1	2	2	29.501	20.648	2	0.00071527	12552	160513_QHF_FH_JSI10Kac_4	89.298	81.731			0.85471	0.93673	16.555	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.1904	NaN	1	0	Median	0.80637	0.80418	NaN	1	0	Median	0.85471	0.93673	5.8436	2	0	Median	50026000	27726000	22300000	0	0	0	11042000	5647900	5394600	20154000	11112000	9042300	18830000	10967000	7863100	18699	4308	17718	114261;114262;114263;114264;114265	154533;154534;154535;154536;154537;154538;154539;154540	154534	3121		8	
GGHVDLTMLGAMQVSK	1	Unmodified	1642.8171	0.81709696	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		10	6						4	3	4	4	9	70.075	67.451	2;3	7.2098E-22	58691	160511_QHF_FH_JSI12i_3	138.02	120.16			1.1246	1.0493	22.019	17	7	Median	1.4048	1.2302	26.191	3	1	Median	0.77642	0.96344	28.161	4	2	Median	1.1733	1.1585	9.1112	4	2	Median	0.8621	0.90938	16.487	6	2	Median	1523600000	788460000	735090000	220050000	98093000	121950000	307960000	179070000	128890000	541350000	256760000	284590000	454190000	254540000	199650000	18700	1865	17719	114266;114267;114268;114269;114270;114271;114272;114273;114274;114275;114276;114277;114278;114279;114280;114281;114282;114283;114284;114285	154541;154542;154543;154544;154545;154546;154547;154548;154549;154550;154551;154552;154553;154554;154555;154556;154557;154558;154559;154560;154561;154562;154563;154564;154565;154566;154567;154568;154569	154569			28	
GGHVDLTMLGAMQVSK	1	2 Oxidation (M)	1674.8069	0.8069262	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	2	0	By MS/MS			By MS/MS	9	6			1					1		1			1	48.903	43.506	3	0.00089415	23290	160513_QHF_FH_JSI9Kac_5	57.148	52.757			0.96398	0.91097	37.775	2	0	Median	1.3911	1.1899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66799	0.69743	NaN	1	0	Median	49265000	29152000	20113000	11165000	3945900	7218800	0	0	0	0	0	0	38100000	25206000	12894000	18701	1865	17719	114286;114287	154570;154571	154570		1544;1545	1	
GGHVDLTMLGAMQVSK	1	Oxidation (M)	1658.812	0.81201158	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS				16	0									2	2				63.353	54.375	3	0.00024706	27919	160513_QHF_FH_JSI9Kac_6	82.529	70.916			1.094	0.93919	83.252	2	2	Median	1.094	0.93919	83.252	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25643000	14050000	11593000	25643000	14050000	11593000	0	0	0	0	0	0	0	0	0	18702	1865	17719	114288;114289	154572;154573	154572		1544;1545	2	
GGIADSVAK	1	Unmodified	816.43413	0.43413207	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				17.252	16.19	2	0.018701	13399	160511_QHF_FH_JSI9i_1	51.346	20.734			1.413	1.1489	NaN	1	1	Median	1.413	1.1489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48457000	24026000	24430000	48457000	24026000	24430000	0	0	0	0	0	0	0	0	0	18703	4678	17720	114290	154574	154574			1	
GGIEIVK	1	Unmodified	714.42759	0.42759012	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		28.011	27.805	2	0.035154	24582	160511_QHF_FH_JSI11i_1	50.898	13.923			1.0766	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0766	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19795000	9681100	10114000	0	0	0	0	0	0	19795000	9681100	10114000	0	0	0	18704	2432	17721	114291	154575	154575			1	
GGIFQPELLSSYK	1	Unmodified	1437.7504	0.75038083	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		79.514	78.883	2	0.0007932	69299	160511_QHF_FH_JSI11i_2	79.693	60.422			0.2346	0.23493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2346	0.23493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73225000	56695000	16531000	0	0	0	0	0	0	73225000	56695000	16531000	0	0	0	18705	2499	17722	114292	154576	154576			1	
GGIGASENLENPPK	1	Unmodified	1381.6838	0.68375782	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		33.15	32.539	2	9.3345E-52	28923	160511_QHF_FH_JSI10i_1	213.16	171.16			0.80415	0.84531	14.176	3	1	Median	1.0186	0.84531	NaN	1	1	Median	0.80415	0.93528	NaN	1	0	Median	0.73566	0.70691	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	120990000	62193000	58796000	36192000	16439000	19753000	48579000	25289000	23290000	36219000	20465000	15753000	0	0	0	18706	235	17723	114293;114294;114295	154577;154578;154579;154580;154581	154580			5	
GGIHTADTK	1	Unmodified	898.45084	0.45084476	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	4.9258	4.6311	2	1.2553E-05	2478	160511_QHF_FH_JSI11i_2	110.38	78.248			1.2462	1.2542	50.296	5	0	Median	1.4691	1.2542	NaN	1	0	Median	0.84738	1.0163	NaN	1	0	Median	2.0453	2.0638	NaN	1	0	Median	0.81481	0.84738	67.929	2	0	Median	876930000	406620000	470310000	174550000	49562000	124980000	150420000	85247000	65174000	128640000	38727000	89914000	423320000	233080000	190240000	18707	134	17724	114296;114297;114298;114299;114300	154582;154583;154584	154584			3	
GGILDTAIVDR	0	Unmodified	1128.6139	0.61388734	4377	Q9BRP4	PAAF1	Proteasomal ATPase-associated factor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	60.096	58.996	2	0.00095687	50556	160511_QHF_FH_JSI12i_2	86.898	61.161			1.8178	2.1038	76.249	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0276	1.227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.2157	3.6071	NaN	1	0	Median	62714000	27103000	35611000	0	0	0	26303000	13618000	12686000	0	0	0	36411000	13485000	22925000	18708	4377	17725	114301;114302	154585;154586	154585			1	
GGILITER	0	Unmodified	857.49707	0.49706667	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	32.975	32.478	2	0.007679	27320	160511_QHF_FH_JSI12i_3	58.782	26.827			1.0083	1.0015	13.269	5	0	Median	1.2647	1.0867	NaN	1	0	Median	0.66906	0.82972	NaN	1	0	Median	1.0006	0.96968	17.925	2	0	Median	1.0083	1.0015	NaN	1	0	Median	410420000	192900000	217520000	55818000	24231000	31587000	80505000	46066000	34439000	170570000	77664000	92901000	103530000	44936000	58594000	18709	1557	17726	114303;114304;114305;114306;114307	154587;154588;154589;154590;154591	154590			5	
GGIMLPEK	1	Oxidation (M)	859.44734	0.44733929	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	39.196	33.242	2	0.0042781	29845	160511_QHF_FH_JSI12i_1	77.058	45.768			1.0514	1.0937	17.14	10	0	Median	1.1663	0.96998	NaN	1	0	Median	0.85482	1.0327	7.9598	3	0	Plateau	1.3212	1.2997	9.1122	3	0	Median	0.71613	0.76433	23.242	3	0	Plateau	1018800000	546800000	471970000	150340000	68629000	81715000	285790000	146970000	138820000	266400000	128560000	137840000	316240000	202640000	113600000	18710	1959	17727	114308;114309;114310;114311;114312;114313;114314;114315;114316;114317	154592;154593;154594;154595;154596;154597;154598;154599;154600;154601;154602;154603	154595		1628	12	
GGIMLPEK	1	Unmodified	843.45242	0.45242467	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.37	6.09	5	5	2			1	3	3		4	5	4	6	41.625	37.171	2	0.00060564	32627	160511_QHF_FH_JSI10i_2	102.71	77.715			0.98998	1.0134	34.455	18	2	Median	0.78883	0.97123	70.367	4	1	Linear	0.87513	1.0414	12.287	5	0	Median	1.1649	1.1599	13.747	4	0	Median	0.8421	0.92465	9.7318	5	1	Median	11832000000	5624100000	6207500000	2483600000	1012200000	1471400000	3058800000	1618800000	1440000000	3713500000	1641900000	2071600000	2575700000	1351200000	1224500000	18711	1959	17727	114318;114319;114320;114321;114322;114323;114324;114325;114326;114327;114328;114329;114330;114331;114332;114333;114334;114335;114336	154604;154605;154606;154607;154608;154609;154610;154611;154612;154613;154614;154615;154616;154617;154618;154619;154620;154621;154622;154623;154624;154625;154626;154627;154628;154629;154630;154631	154628			28	
GGIMLPEKSQGK	2	Acetyl (K)	1285.67	0.67002202	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		57.202	46.252	2	0.02351	26627	160513_QHF_FH_JSI11Kac_4	47.823	36.333			0.2057	0.20042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2057	0.20042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5783900	4588800	1195100	0	0	0	0	0	0	5783900	4588800	1195100	0	0	0	18712	1959	17728	114337	154632;154633	154633	1976		2	
GGIPNVEGAAK	1	Unmodified	1011.5349	0.53490874	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.344	29.745	2	0.00030762	26527	160511_QHF_FH_JSI11i_1	76.1	46.938			0.89727	1.5674	32.482	4	0	Linear	1.0062	0.83682	NaN	1	0	Median	0.72244	0.86163	NaN	1	0	Median	0.80011	0.78918	NaN	1	0	Median	1.4981	1.5803	NaN	1	0	Median	580440000	268780000	311670000	115820000	48856000	66962000	131900000	70337000	61560000	113930000	64164000	49766000	218800000	85421000	133380000	18713	4481	17729	114338;114339;114340;114341	154634;154635;154636;154637;154638	154634			5	
GGIQELIGLIK	1	Unmodified	1139.6914	0.69140938	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.697	98.706	2	5.4892E-05	85509	160511_QHF_FH_JSI12i_3	94.692	78.489			1.0735	1.0836	10.796	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0482	1.004	NaN	1	0	Median	1.0994	1.1696	NaN	1	0	Median	31263000	13421000	17842000	0	0	0	0	0	0	10439000	4810600	5628300	20825000	8610700	12214000	18714	1430	17730	114342;114343	154639;154640	154640			1	
GGIQLIR	0	Unmodified	755.46537	0.46537261	5840				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	95.998	95.708	2	0.0093014	82334	160511_QHF_FH_JSI12i_2	69.39	24.779	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11791000	11791000	0	0	0	0	4560300	4560300	0	7230400	7230400	0	0	0	0	18715	5840	17731	114344;114345;114346;114347;114348	154641;154642;154643;154644;154645	154641			5	
GGISNILEELVVQPLLVSVSALTLATETVR	0	Unmodified	3120.7646	0.76458091	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	2				3			1		11	3	4	4	4	106.77	97.938	2;3;4	0	59865	160513_QHF_FH_JSI10Kac_6	348.39	319.81			1.2139	1.2209	19.267	12	6	Median	1.4125	1.1965	19.773	3	1	Plateau	0.98221	1.1586	12.028	3	1	Plateau	1.3185	1.2457	6.502	3	2	Median	0.90969	0.96343	28.397	3	2	Plateau	1552500000	1046000000	506480000	244650000	101520000	143130000	865510000	738700000	126810000	382390000	166390000	215990000	59967000	39425000	20542000	18716	1722	17732	114349;114350;114351;114352;114353;114354;114355;114356;114357;114358;114359;114360;114361;114362;114363	154646;154647;154648;154649;154650;154651;154652;154653;154654;154655;154656;154657;154658;154659;154660;154661	154660			16	
GGITQPNINDSLEITK	1	Unmodified	1698.8788	0.87882882	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	62.965	62.476	2	6.4487E-07	56430	160511_QHF_FH_JSI10i_1	156.69	103.01			0.64952	0.65966	10.799	3	0	Median	NaN	NaN	NaN	0	0	Median	0.49483	0.59033	NaN	1	0	Median	0.7766	0.73263	NaN	1	0	Median	0.64952	0.65966	NaN	1	0	Median	234430000	138890000	95542000	0	0	0	82433000	54914000	27519000	64691000	34253000	30438000	87305000	49719000	37585000	18717	1347	17733	114364;114365;114366	154662;154663;154664;154665;154666	154666			4	
GGIVDEGALLR	0	Unmodified	1098.6033	0.60332266	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.79	4	4	4			1	3	2		3	4	5	6	59.498	55.438	2	3.2932E-59	47434	160511_QHF_FH_JSI12i_2	226.47	137.32			0.90788	0.9644	20.257	18	2	Median	1.291	1.0554	1.8118	3	0	Median	0.75181	0.89411	9.5783	4	1	Linear	0.89219	0.92608	25.887	5	0	Plateau	0.83617	0.91527	27.45	6	1	Median	9406900000	4912200000	4494700000	1935800000	840400000	1095400000	2493200000	1385000000	1108200000	2435800000	1253000000	1182800000	2542100000	1433800000	1108300000	18718	309	17734	114367;114368;114369;114370;114371;114372;114373;114374;114375;114376;114377;114378;114379;114380;114381;114382;114383;114384	154667;154668;154669;154670;154671;154672;154673;154674;154675;154676;154677;154678;154679;154680;154681;154682;154683;154684;154685;154686;154687;154688;154689;154690;154691;154692	154670			25	
GGIVGMTLPIAR	0	Unmodified	1183.6747	0.67471346	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.48	3	4	4					2	1	1	4	6	3	76.176	73.571	2	1.2089E-10	66341	160511_QHF_FH_JSI10i_2	143.03	97.354			0.92803	1.0065	9.327	14	5	Median	1.2854	1.0834	NaN	1	0	Median	0.88902	1.0246	6.7199	4	1	Median	1.0444	1.0123	8.7659	6	3	Median	0.91708	0.92699	6.9862	3	1	Median	7517600000	3717500000	3800200000	739570000	305820000	433750000	1714600000	915380000	799270000	2926300000	1398500000	1527900000	2137100000	1097800000	1039300000	18719	4304	17735	114385;114386;114387;114388;114389;114390;114391;114392;114393;114394;114395;114396;114397;114398	154693;154694;154695;154696;154697;154698;154699;154700;154701;154702;154703;154704;154705;154706;154707;154708;154709;154710;154711;154712	154710			19	
GGIVGMTLPIAR	0	Oxidation (M)	1199.6696	0.66962808	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	5.75			4				2	3	3	2	4	3	3	63.377	56.566	2	3.1834E-05	46407	160511_QHF_FH_JSI9i_3	111.06	96.391			0.93273	1.1165	31.425	11	3	Median	1.651	1.3963	0.88751	2	0	Median	0.90202	1.0908	12.799	3	1	Median	0.69117	0.65071	46.827	3	1	Plateau	0.82576	0.8402	34.976	3	1	Plateau	527690000	266660000	261040000	85896000	35698000	50198000	103430000	53690000	49736000	130470000	62998000	67469000	207910000	114270000	93636000	18720	4304	17735	114399;114400;114401;114402;114403;114404;114405;114406;114407;114408;114409;114410	154713;154714;154715;154716;154717;154718;154719;154720;154721;154722;154723;154724;154725	154718		2436	13	
GGIVSQVK	1	Unmodified	786.45995	0.45995289	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.33	4	5	1			3	4	5	2	6	7	6	5	19.638	14.307	2	1.0575E-10	9893	160513_QHF_FH_JSI12Kac_4	153.73	61.26			0.73132	0.78637	76.288	22	10	Median	0.53645	0.45379	87.593	6	4	Median	0.64613	0.76641	34.884	5	2	Median	0.9469	0.91543	35.23	6	2	Median	0.63015	0.67981	110.03	5	2	Median	19363000000	17086000000	2277400000	7061100000	6440600000	620520000	3415900000	2855000000	560840000	2343900000	1668100000	675810000	6542500000	6122300000	420260000	18721	1208	17736	114411;114412;114413;114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426;114427;114428;114429;114430;114431;114432;114433;114434	154726;154727;154728;154729;154730;154731;154732;154733;154734;154735;154736;154737;154738;154739;154740;154741;154742;154743;154744;154745;154746;154747;154748;154749;154750;154751;154752	154742			27	
GGKGLGK	2	Acetyl (K)	657.38097	0.38097428	2019	P62805	HIST1H4A	Histone H4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	0.866					1	3	3	1		1	4	1	2	10.602	2.6099	2	0.0022515	4317	160513_QHF_FH_JSI12Kac_3	107.43	40.395			1.2559	1.2605	84.701	8	0	Median	1.6627	1.4077	NaN	1	0	Median	3.4147	4.0659	65.966	4	0	Median	0.8897	0.8789	NaN	1	0	Median	0.58031	0.63214	9.1407	2	0	Median	452720000	169790000	282930000	7149200	2438300	4710900	271030000	62673000	208360000	63211000	35737000	27474000	111330000	68945000	42383000	18722	2019	17737	114435;114436;114437;114438;114439;114440;114441;114442	154753;154754;154755;154756;154757;154758;154759;154760	154757	2053;2054		8	
GGKGLGKGGAK	3	2 Acetyl (K)	1012.5665	0.56654322	2019	P62805	HIST1H4A	Histone H4	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	0.866					1	3	3	1		1	3	2	2	22.102	12.872	2	2.917E-10	9338	160513_QHF_FH_JSI10Kac_4	136.63	60.781			2.4639	2.9214	167.28	7	2	Median	NaN	NaN	NaN	0	0	Median	2.4639	2.8742	6.605	3	0	Plateau	9.0929	9.0227	274.49	2	1	Median	5.3437	5.7595	278.15	2	1	Median	655470000	262950000	392530000	89892000	89892000	0	200980000	53752000	147230000	140030000	27946000	112090000	224570000	91358000	133210000	18723	2019	17738	114443;114444;114445;114446;114447;114448;114449;114450	154761;154762;154763;154764;154765;154766;154767;154768;154769	154761	2053;2054;2055		9	
GGKGLGKGGAKR	3	3 Acetyl (K)	1210.6782	0.67821894	2019	P62805	HIST1H4A	Histone H4	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	1.1					2	7	11	7	4	6	9	7	9	27.744	18.531	2;3	2.0954E-61	1269	160513_QHF_FH_JSI9Kac_4	208.6	165.52			2.1165	1.826	208.54	28	2	Median	2.4074	2.0768	9.9024	6	0	Median	4.9144	4.5219	13.459	8	0	Linear	1.0537	1.0317	401.71	7	2	Median	0.68183	0.74732	11.394	7	0	Median	6527400000	2355300000	4172200000	1228000000	377050000	850940000	3065400000	506100000	2559300000	1251700000	612860000	638800000	982340000	859250000	123090000	18724	2019	17739	114451;114452;114453;114454;114455;114456;114457;114458;114459;114460;114461;114462;114463;114464;114465;114466;114467;114468;114469;114470;114471;114472;114473;114474;114475;114476;114477;114478;114479;114480;114481	154770;154771;154772;154773;154774;154775;154776;154777;154778;154779;154780;154781;154782;154783;154784;154785;154786;154787;154788;154789;154790;154791;154792;154793;154794;154795;154796;154797;154798;154799;154800;154801;154802;154803;154804;154805;154806;154807;154808;154809;154810;154811;154812;154813;154814	154779	2053;2054;2055		45	
GGKGSAVPSDSQAR	1	Acetyl (K)	1357.6586	0.65860571	4499	Q9BWG4	SSBP4	Single-stranded DNA-binding protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	20.118	12.895	2	1.3647E-06	6901	160513_QHF_FH_JSI10Kac_2	106.01	82.631			0.86728	0.98702	4.0951	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84077	0.99984	1.8247	2	0	Median	1.0758	1.0572	NaN	1	0	Median	0.89622	0.96056	1.3053	2	0	Median	88307000	47400000	40906000	0	0	0	30704000	16272000	14432000	16726000	8319600	8406900	40876000	22809000	18067000	18725	4499	17740	114482;114483;114484;114485;114486;114487	154815;154816;154817;154818;154819;154820;154821;154822;154823;154824;154825	154819	3172		11	
GGKNSTWSGESK	2	Acetyl (K)	1278.584	0.58404378	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				1	2	2	22.101	14.663	2	0.0036005	9339	160513_QHF_FH_JSI12Kac_4	69.01	54.803			0.96177	1.0555	36.631	5	0	Median	NaN	NaN	NaN	0	0	Median	0.97242	1.1404	NaN	1	0	Median	1.4059	1.3746	65.152	2	0	Median	0.91151	0.99461	8.3995	2	0	Median	23552000	12802000	10750000	0	0	0	4296400	2007200	2289200	9589400	5038300	4551200	9665800	5756100	3909700	18726	1154	17741	114488;114489;114490;114491;114492	154826;154827;154828;154829;154830	154829	1016		5	
GGKPEPPAMPQPVPTA	1	Oxidation (M)	1588.7919	0.79192806	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	39.165	34.932	2	0.0042328	30734	160511_QHF_FH_JSI10i_1	72.29	66.058			0.86488	1.0463	19.649	7	0	Median	1.3747	1.1644	NaN	1	0	Median	0.81111	0.97621	10.103	2	0	Median	1.138	1.1175	9.3108	2	0	Median	0.73547	0.7882	23.164	2	0	Median	338620000	174170000	164450000	64864000	26602000	38262000	83570000	44955000	38615000	94595000	42648000	51947000	95594000	59966000	35628000	18727	1227	17742	114493;114494;114495;114496;114497;114498;114499	154831;154832;154833;154834;154835;154836	154834		862	5	
GGKPEPPAMPQPVPTA	1	Unmodified	1572.797	0.79701344	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	50.925	50.219	2;3	0.00019765	45228	160511_QHF_FH_JSI10i_1	114.24	110.59			1.0583	1.1488	7.1543	9	1	Median	1.4141	1.1824	2.9612	2	0	Median	0.95554	1.1473	2.5698	3	1	Median	1.1564	1.1228	12.204	2	0	Median	1.0043	1.0624	11.059	2	0	Median	13338000000	6364700000	6973000000	3959000000	1693300000	2265700000	3778000000	1941100000	1836900000	2996900000	1368700000	1628200000	2603800000	1361600000	1242300000	18728	1227	17742	114500;114501;114502;114503;114504;114505;114506;114507;114508	154837;154838;154839;154840;154841;154842;154843;154844;154845;154846;154847;154848;154849;154850;154851;154852;154853;154854;154855;154856;154857;154858	154850			22	
GGKPGLTIQAPQLEVSVPSANIEGLEGK	2	Unmodified	2788.4971	0.49707326	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	4	2	2	90.775	90.31	3;4	3.379E-14	80511	160511_QHF_FH_JSI11i_3	88.595	86.392			0.82163	0.87179	22.809	10	5	Median	1.2302	1.0543	12.877	2	1	Median	0.70594	0.84665	15.8	4	3	Median	0.95317	0.9044	1.5693	2	0	Median	0.62816	0.64526	35.223	2	1	Median	608810000	327850000	280960000	53365000	25887000	27478000	193320000	113120000	80206000	280890000	137530000	143360000	81230000	51309000	29921000	18729	2286	17743	114509;114510;114511;114512;114513;114514;114515;114516;114517;114518	154859;154860;154861;154862;154863;154864;154865;154866;154867;154868;154869;154870;154871;154872;154873	154859			15	
GGKTLCKGYRQAPPGPPAQFQR	2	2 Acetyl (K)	2497.2648	0.26484567	1420	P35125	USP6	Ubiquitin carboxyl-terminal hydrolase 6	yes	yes	2	0	0	3	By MS/MS				16	0									1	1				97.348	88.243	3	0.022914	50478	160513_QHF_FH_JSI9Kac_6	47.808	27.91			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139670000	0	139670000	139670000	0	139670000	0	0	0	0	0	0	0	0	0	18730	1420	17744	114519	154874	154874	1383;1384		1	
GGKYSVQFK	2	Acetyl (K)	1054.5447	0.54474515	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.832	37.392	2	0.00061923	22143	160513_QHF_FH_JSI11Kac_4	91.867	57.614			3.1473	3.1214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1473	3.1214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27603000	6759700	20843000	0	0	0	0	0	0	27603000	6759700	20843000	0	0	0	18731	1486	17745	114520	154875	154875	1497		1	
GGLAGEFQR	0	Unmodified	933.46683	0.46682918	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	27.526	27.481	2	0.001492	23026	160511_QHF_FH_JSI12i_2	71.379	51.743			1.1681	1.1518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1681	1.1518	NaN	1	1	Median	30402000	13807000	16595000	0	0	0	0	0	0	0	0	0	30402000	13807000	16595000	18732	421	17746	114521;114522	154876;154877	154876			2	
GGLAKDSGTQAK	2	Acetyl (K)	1173.599	0.59896556	2821	Q3T8J9	GON4L	GON-4-like protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	18.312	11.105	2	0.0013961	7693	160513_QHF_FH_JSI12Kac_3	81.338	52.251			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1053700	512990	540660	0	0	0	540660	0	540660	0	0	0	512990	512990	0	18733	2821	17747	114523;114524	154878;154879	154878	2693		2	
GGLEMLPQALETHLTSR	0	Unmodified	1851.9513	0.95128225	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	83.223	82.804	3	3.5434E-11	73797	160511_QHF_FH_JSI10i_2	118.31	100.74			0.75705	0.76738	11.839	5	5	Median	0.76231	0.64165	NaN	1	1	Median	0.67935	0.82638	10.617	2	2	Median	0.83692	0.8009	NaN	1	1	Median	0.75705	0.76738	NaN	1	1	Median	536460000	300790000	235660000	64669000	43635000	21034000	122800000	74198000	48601000	180170000	90723000	89445000	168820000	92239000	76582000	18734	1701	17748	114525;114526;114527;114528;114529	154880;154881;154882;154883;154884	154883			5	
GGLFQGGVLK	1	Unmodified	974.55492	0.5549159	3745	Q8TF74	WIPF2	WAS/WASL-interacting protein family member 2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	54.853	54.014	2	0.0077802	46342	160511_QHF_FH_JSI12i_3	75.692	61.178			1.0659	1.1084	9.2356	4	0	Median	1.3573	1.08	NaN	1	0	Median	0.95465	1.1375	NaN	1	0	Median	1.1902	1.1405	NaN	1	0	Median	0.9521	0.93675	NaN	1	0	Median	293540000	136630000	156910000	49946000	18980000	30966000	55118000	29552000	25566000	61707000	26490000	35217000	126760000	61607000	65156000	18735	3745	17749	114530;114531;114532;114533	154885	154885			0	
GGLGAPPLQSAR	0	Unmodified	1122.6146	0.61455605	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.7	3	4	2				1			1	2	3	4	36.957	34.862	2	0.0010762	29673	160511_QHF_FH_JSI12i_2	65.535	48.023			0.80401	0.88101	9.8536	7	0	Median	1.1768	1.0132	NaN	1	0	Median	0.77164	0.92779	7.3168	2	0	Median	0.91729	0.92572	9.9403	3	0	Linear	0.71367	0.80205	NaN	1	0	Median	361500000	187880000	173630000	59161000	27647000	31514000	112290000	65342000	46950000	140120000	70211000	69913000	49928000	24675000	25253000	18736	2168	17750	114534;114535;114536;114537;114538;114539;114540;114541;114542;114543	154886;154887;154888;154889;154890;154891;154892;154893;154894;154895;154896	154886			11	
GGLGLILK	1	Unmodified	769.50617	0.5061748	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.61		4	4					2	5	4	4	3	4	63.533	58.944	2	2.0947E-07	30862	160513_QHF_FH_JSI12Kac_6	129.96	52.212			0.94743	0.90527	17.524	14	1	Median	1.3425	1.1294	16.222	4	0	Median	0.84779	0.9869	24.942	4	0	Median	0.95922	0.89565	5.5895	3	0	Median	0.83305	0.88338	5.5858	3	1	Median	3875400000	1885700000	1989700000	691560000	279530000	412030000	762070000	365440000	396630000	889930000	440770000	449160000	1531900000	800000000	731870000	18737	573	17751	114544;114545;114546;114547;114548;114549;114550;114551;114552;114553;114554;114555;114556;114557;114558	154897;154898;154899;154900;154901;154902;154903;154904;154905;154906;154907;154908;154909;154910;154911;154912;154913;154914;154915;154916;154917;154918;154919;154920;154921;154922;154923;154924;154925;154926;154927;154928	154927			32	
GGLGLSGAK	1	Unmodified	758.42865	0.42865276	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	2	2	3	20.151	18.406	2	0.00017471	15418	160511_QHF_FH_JSI11i_3	87.181	31.505			1.0004	1.1022	79.243	7	1	Median	1.3916	1.1894	NaN	1	0	Median	0.99027	1.2044	NaN	1	0	Median	1.1267	1.0953	19.644	2	0	Median	0.99038	1.0228	117.28	3	1	Plateau	1592800000	814380000	778440000	300750000	157280000	143470000	249640000	130250000	119390000	507130000	243970000	263160000	535290000	282870000	252420000	18738	1216	17752	114559;114560;114561;114562;114563;114564;114565;114566	154929;154930;154931;154932;154933;154934;154935;154936;154937	154929			9	
GGLGVSSSTDGTMK	1	Unmodified	1295.6027	0.60273031	4377	Q9BRP4	PAAF1	Proteasomal ATPase-associated factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		26.462	26.16	2	0.00036864	23082	160511_QHF_FH_JSI10i_1	101.35	83.913			0.84263	0.98022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84263	0.98022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48534000	26852000	21681000	0	0	0	48534000	26852000	21681000	0	0	0	0	0	0	18739	4377	17753	114567;114568	154938;154939	154939			2	
GGLGYVEETSEFEAR	0	Unmodified	1642.7475	0.74748029	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	1	2	59.431	58.515	2	2.0677E-40	50733	160511_QHF_FH_JSI11i_2	208.74	180.54			1.2534	1.3876	13.132	5	4	Median	1.5517	1.3876	NaN	1	1	Median	1.1285	1.3799	14.724	2	2	Median	1.4903	1.4872	NaN	1	0	Median	1.0233	1.1158	NaN	1	1	Median	235880000	106660000	129220000	46614000	16686000	29928000	89998000	42855000	47143000	60968000	28619000	32348000	38305000	18501000	19804000	18740	5330	17754	114569;114570;114571;114572;114573;114574;114575	154940;154941;154942;154943;154944;154945;154946;154947	154944			8	
GGLHFVVPSVEGSMAER	0	Unmodified	1770.8723	0.87230365	3098	Q6P1X5	TAF2	Transcription initiation factor TFIID subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		68.321	68.321	3	0.00084136	57571	160511_QHF_FH_JSI10i_3	49.463	42.424			0.47935	0.45275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47935	0.45275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25739000	16660000	9079600	0	0	0	0	0	0	25739000	16660000	9079600	0	0	0	18741	3098	17755	114576;114577	154948;154949	154949			2	
GGLIGLAACSIALGK	1	Unmodified	1399.7857	0.78572048	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	87.323	86.688	2	4.1889E-17	77382	160511_QHF_FH_JSI11i_3	127.83	103.54			1.0202	1.1558	22.959	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.3596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90298	0.98264	NaN	1	0	Median	18841000	9792400	9049000	0	0	0	8835400	3878100	4957400	0	0	0	10006000	5914300	4091600	18742	2280	17756	114578;114579;114580;114581	154950;154951;154952;154953	154950			4	
GGLLCTLQGK	1	Unmodified	1045.559	0.559015	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			50.018	48.432	2	0.00011105	40459	160511_QHF_FH_JSI10i_3	99.442	76.702			1.2374	1.2026	8.0357	2	1	Median	1.3704	1.1361	NaN	1	0	Median	1.1174	1.2729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50594000	21946000	28649000	16614000	6072600	10541000	33981000	15873000	18107000	0	0	0	0	0	0	18743	319	17757	114582;114583	154954;154955	154954			2	
GGLLTSEEDSGFSTSPK	1	Unmodified	1710.7948	0.79482442	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	52.845	52.31	2	2.4933E-16	46493	160511_QHF_FH_JSI9i_1	117.7	99.568			0.71896	0.77649	11.993	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7412	0.84521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69738	0.71336	NaN	1	1	Median	68013000	43742000	24271000	0	0	0	35051000	22096000	12956000	0	0	0	32961000	21646000	11315000	18744	5482	17758	114584;114585;114586	154956;154957;154958	154958			3	
GGLNTPLHESDFSGVTPQR	0	Unmodified	2010.9759	0.9759171	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	3	4	2	54.265	53.723	2;3	6.8633E-33	46034	160511_QHF_FH_JSI12i_3	183.56	174.72			0.93081	1.0537	20.096	10	2	Median	1.2357	1.0535	NaN	1	0	Median	0.86488	1.059	26.512	3	0	Median	1.0139	0.98052	25.992	4	2	Median	0.95978	0.98629	9.3726	2	0	Median	1142200000	543250000	599000000	148440000	64204000	84239000	197310000	104440000	92863000	513710000	226030000	287680000	282790000	148580000	134210000	18745	4271	17759	114587;114588;114589;114590;114591;114592;114593;114594;114595;114596	154959;154960;154961;154962;154963;154964;154965;154966;154967;154968	154966			10	
GGLQEVADQLDLQR	0	Unmodified	1540.7845	0.7845345	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	69.964	69.388	2	0.0004644	62904	160511_QHF_FH_JSI10i_1	95.417	60.239			0.42932	0.44669	70.253	3	1	Median	0.41605	0.35665	NaN	1	0	Median	1.1407	1.3266	NaN	1	1	Median	0.42932	0.44669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112060000	68369000	43696000	23638000	16788000	6850900	48595000	28318000	20277000	39831000	23263000	16568000	0	0	0	18746	5277	17760	114597;114598;114599;114600	154969;154970;154971;154972	154970			4	
GGLRDPLIFK	1	Unmodified	1114.6499	0.64987892	5522	Q9Y2K7	KDM2A	Lysine-specific demethylase 2A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				55.269	53.704	3	0.043687	44050	160511_QHF_FH_JSI9i_3	32.329	25.67			0.26415	0.22998	NaN	1	1	Median	0.26415	0.22998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5162900	3899200	1263700	5162900	3899200	1263700	0	0	0	0	0	0	0	0	0	18747	5522	17761	114601	154973	154973			1	
GGLSAVDAFEIHVHR	0	Unmodified	1606.8216	0.82158871	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.498	59.498	4	0.00020856	52964	160511_QHF_FH_JSI11i_3	47.532	41.095			1.4152	1.2965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4152	1.2965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28147000	10013000	18134000	0	0	0	0	0	0	28147000	10013000	18134000	0	0	0	18748	2491	17762	114602	154974	154974			1	
GGLSPANDTGAK	1	Unmodified	1086.5306	0.53055165	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	3	2	2	13.508	11.973	2	7.3147E-08	9632	160511_QHF_FH_JSI9i_1	138.23	118.98			0.82903	0.8626	17.753	6	5	Median	1.3892	1.1486	NaN	1	0	Median	0.65825	0.76095	19.057	2	2	Median	0.84128	0.8226	5.3893	2	2	Median	0.83891	0.88428	NaN	1	1	Median	830050000	443780000	386280000	158790000	64765000	94021000	172120000	104320000	67804000	358190000	186430000	171750000	140960000	88258000	52702000	18749	1351	17763	114603;114604;114605;114606;114607;114608;114609;114610	154975;154976;154977;154978;154979;154980;154981;154982;154983	154981			9	
GGLSPANDTGAKK	2	Unmodified	1214.6255	0.62551466	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.9436	9.0412	3	0.013921	6436	160511_QHF_FH_JSI12i_3	38.399	25.783			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18750	1351	17764	114611	154984	154984			1	
GGLSPANDTGAKKK	3	Acetyl (K)	1384.731	0.73104237	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	21.046	13.492	3	0.012725	8863	160513_QHF_FH_JSI12Kac_4	49.929	30.718			0.69699	0.73615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69699	0.73615	NaN	1	0	Median	2311600	1256700	1054900	0	0	0	0	0	0	0	0	0	2311600	1256700	1054900	18751	1351	17765	114612	154985	154985	1288;1289		1	
GGLTGLTLTSLYALYNNWEHMK	1	Unmodified	2481.2362	0.23623089	219	O14925	TIMM23	Mitochondrial import inner membrane translocase subunit Tim23	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	1	3	1	98.355	91.175	2;3	0	50420	160513_QHF_FH_JSI11Kac_6	434.54	398.02			0.85092	0.93501	26.425	6	1	Median	1.365	1.1696	NaN	1	0	Median	0.90697	1.0531	NaN	1	0	Median	0.79833	0.772	37.01	3	1	Median	0.79698	0.83013	NaN	1	0	Median	7952300000	4144500000	3807700000	1807200000	737770000	1069400000	177290000	87255000	90034000	4241700000	2324700000	1917000000	1726100000	994780000	731290000	18752	219	17766	114613;114614;114615;114616;114617;114618	154986;154987;154988;154989;154990;154991	154988			6	
GGLTGLTLTSLYALYNNWEHMK	1	Oxidation (M)	2497.2311	0.23114551	219	O14925	TIMM23	Mitochondrial import inner membrane translocase subunit Tim23	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.74	87.435	3	1.496E-189	47729	160513_QHF_FH_JSI12Kac_6	298.76	285.18			0.93562	0.97861	13.216	3	0	Plateau	1.4988	1.2744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1738	1.1266	NaN	1	0	Median	0.93562	0.97861	NaN	1	0	Median	1818400000	876240000	942150000	405730000	164830000	240900000	0	0	0	556280000	257160000	299120000	856380000	454250000	402130000	18753	219	17766	114619;114620;114621	154992;154993;154994;154995	154995		89	4	
GGLTSPIFCSTKPK	2	Acetyl (K)	1533.7861	0.78611441	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	14.2	0.433							3	1			1	1	2	71.762	61.059	2	0.0034189	32642	160513_QHF_FH_JSI10Kac_4	66.056	35.492			1.062	1.039	107.67	3	1	Median	NaN	NaN	NaN	0	0	Median	0.76385	0.8972	NaN	1	0	Median	1.062	1.039	NaN	1	0	Median	5.7072	6.2061	NaN	1	1	Median	24008000	9969000	14039000	0	0	0	6106700	3724500	2382200	11877000	5598600	6278100	6025200	645900	5379300	18754	5403	17767	114622;114623;114624;114625	154996;154997;154998;154999	154997	3398		4	
GGLVDEK	1	Unmodified	716.37047	0.37046918	1882;2395	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.431	9.0957	2	0.0167	8154	160511_QHF_FH_JSI11i_1	62.659	29.143			0.74985	0.87048	17.347	7	0	Median	1.3075	1.035	NaN	1	0	Median	0.84466	0.99256	18.561	2	0	Median	0.82466	0.80949	14.53	2	0	Median	0.69368	0.74326	1.2881	2	0	Median	3303600000	1678200000	1625500000	1144100000	526630000	617500000	759630000	412030000	347600000	754980000	383360000	371620000	644890000	356130000	288760000	18755	1882;2395	17768	114626;114627;114628;114629;114630;114631;114632	155000;155001;155002;155003;155004;155005;155006	155000			7	
GGLVGQAPMPVPEEK	1	Unmodified	1507.7705	0.77046434	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	56.569	55.914	2	8.7235E-05	50606	160511_QHF_FH_JSI11i_1	110.08	94.212			1.1058	1.0444	8.9137	4	0	Median	1.2848	1.0391	NaN	1	0	Median	0.81099	0.94552	NaN	1	0	Median	1.202	1.1755	NaN	1	0	Median	1.0172	1.0497	NaN	1	0	Median	183860000	91312000	92551000	50941000	26885000	24055000	41560000	21237000	20324000	56440000	25526000	30913000	34922000	17664000	17258000	18756	4413	17769	114633;114634;114635;114636;114637	155007;155008;155009;155010;155011	155007			5	
GGLVSDAYGEDDFSR	0	Unmodified	1586.6849	0.68488004	5311	Q9UHR5	SAP30BP	SAP30-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.553	51.884	2	6.5404E-10	47102	160511_QHF_FH_JSI12i_1	149.23	136.03			1.1773	1.1834	10.112	4	1	Median	1.6762	1.3676	NaN	1	0	Median	0.91201	1.0704	NaN	1	1	Median	1.2383	1.1943	NaN	1	0	Median	1.1193	1.1726	NaN	1	0	Median	281840000	143050000	138800000	67900000	29672000	38228000	83471000	45179000	38292000	79802000	41928000	37875000	50668000	26267000	24400000	18757	5311	17770	114638;114639;114640;114641	155012;155013;155014;155015;155016	155014			4	
GGLYIVTEYMAK	1	Unmodified	1343.6795	0.67952407	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	79.238	79.111	2	0.00010207	70566	160511_QHF_FH_JSI11i_3	103.7	83.371			1.0352	1.0815	27.296	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94498	0.89165	NaN	1	1	Median	1.1341	1.3117	NaN	1	1	Median	133040000	66317000	66723000	0	0	0	0	0	0	60010000	29945000	30066000	73030000	36372000	36657000	18758	1517	17771	114642;114643	155017;155018	155017			2	
GGMALALAVTK	1	Unmodified	1030.5845	0.58450147	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	63.863	59.085	2	3.6132E-07	48398	160511_QHF_FH_JSI9i_3	118.71	95.283			1.0606	0.94395	26.645	8	4	Median	1.1117	0.91415	34.723	3	2	Median	0.88235	1.0169	26.825	2	0	Median	1.0986	1.0391	9.0398	2	1	Median	0.66465	0.68447	NaN	1	1	Median	931750000	478370000	453380000	243480000	93633000	149840000	187640000	94009000	93631000	190480000	93034000	97444000	310160000	197700000	112460000	18759	962	17772	114644;114645;114646;114647;114648;114649;114650;114651;114652	155019;155020;155021;155022;155023;155024;155025;155026;155027;155028;155029;155030	155025			11	
GGMALALAVTK	1	Oxidation (M)	1046.5794	0.57941609	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		15.8	0.4								1	4	2	1	2		51.83	42.307	2	0.010798	22690	160513_QHF_FH_JSI9Kac_5	63.816	54.228			0.92149	0.83528	52.799	4	3	Median	1.1035	0.922	42.144	2	2	Median	0.3161	0.37527	NaN	1	1	Median	1.0432	1.0194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18355000	10910000	7445400	8016400	4359500	3656800	3811900	2786700	1025200	6527000	3763700	2763400	0	0	0	18760	962	17772	114653;114654;114655;114656;114657	155031;155032;155033;155034;155035	155031		534	4	
GGMALALAVTKYK	2	Acetyl (K);Oxidation (M)	1379.7483	0.74827234	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	1	0	1	1				By MS/MS	15	0								1					1	73.158	62.558	2	0.015197	31047	160513_QHF_FH_JSI12Kac_5	63.283	52.454			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18761	962	17773	114658	155036	155036	729	534	1	
GGMGSGGLATGIAGGLAGMGGIQNEK	1	Oxidation (M)	2276.0889	0.088914722	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	2.22	13	9	16					1		9	12	9	9	73.851	72.849	2;3	2.9254E-112	67933	160511_QHF_FH_JSI11i_3	254.59	232.96			0.92845	0.94281	16.102	35	11	Median	1.2747	1.0368	17.009	9	5	Median	0.77827	0.91327	19.714	11	3	Median	1.0087	0.95141	16.575	8	0	Median	0.89884	0.98073	6.7835	7	3	Median	3531100000	1872200000	1658900000	678780000	336380000	342410000	930800000	552260000	378540000	1196500000	599760000	596720000	725020000	383800000	341220000	18762	842	17774	114659;114660;114661;114662;114663;114664;114665;114666;114667;114668;114669;114670;114671;114672;114673;114674;114675;114676;114677;114678;114679;114680;114681;114682;114683;114684;114685;114686;114687;114688;114689;114690;114691;114692;114693;114694;114695;114696;114697	155037;155038;155039;155040;155041;155042;155043;155044;155045;155046;155047;155048;155049;155050;155051;155052;155053;155054;155055;155056;155057;155058;155059;155060;155061;155062;155063;155064;155065;155066;155067;155068;155069;155070;155071;155072;155073;155074;155075;155076;155077;155078;155079;155080;155081;155082;155083;155084;155085;155086;155087;155088;155089;155090;155091;155092;155093;155094;155095;155096;155097;155098;155099;155100;155101;155102;155103;155104;155105;155106;155107;155108;155109	155047		359;360	73	
GGMGSGGLATGIAGGLAGMGGIQNEK	1	Unmodified	2260.094	0.0940001	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.04	0.838	9	8	10							6	9	6	6	83.266	82.59	2;3	0	73832	160511_QHF_FH_JSI11i_3	501.33	472.35			0.87987	0.92814	11.546	26	2	Median	1.203	0.98195	5.9051	6	0	Median	0.75868	0.89663	15.806	8	2	Median	0.94287	0.91804	6.6264	6	0	Median	0.82393	0.89112	7.4936	6	0	Median	11339000000	6061300000	5277700000	2728000000	1287800000	1440200000	3585900000	2085100000	1500700000	3295500000	1699000000	1596500000	1729700000	989320000	740350000	18763	842	17774	114698;114699;114700;114701;114702;114703;114704;114705;114706;114707;114708;114709;114710;114711;114712;114713;114714;114715;114716;114717;114718;114719;114720;114721;114722;114723;114724	155110;155111;155112;155113;155114;155115;155116;155117;155118;155119;155120;155121;155122;155123;155124;155125;155126;155127;155128;155129;155130;155131;155132;155133;155134;155135;155136;155137;155138;155139;155140;155141;155142;155143;155144;155145;155146;155147;155148;155149;155150;155151;155152;155153;155154;155155;155156;155157;155158;155159;155160;155161;155162;155163;155164;155165;155166;155167;155168;155169;155170;155171;155172;155173;155174;155175;155176;155177;155178;155179;155180;155181;155182;155183	155118			74	
GGMGSGGLATGIAGGLAGMGGIQNEK	1	2 Oxidation (M)	2292.0838	0.083829344	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS		7	5.66			2					1		1	1	1		66.028	61.433	3	7.8513E-14	50454	160511_QHF_FH_JSI9i_3	86.791	77.745			0.9722	0.92924	13.3	3	1	Plateau	1.1789	0.9562	NaN	1	0	Median	0.80176	0.91795	NaN	1	0	Median	1.2026	1.1764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90468000	45856000	44611000	39209000	17958000	21252000	49247000	27263000	21984000	2011500	635600	1375900	0	0	0	18764	842	17774	114725;114726;114727	155184;155185;155186	155185		359;360	3	
GGMLTNAR	0	Unmodified	818.40687	0.40687146	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	12.061	11.622	2	0.0046396	8762	160511_QHF_FH_JSI12i_3	68.081	33.188			0.85826	0.96289	44.686	8	1	Median	1.4906	1.2994	27.552	2	1	Median	0.72997	0.87733	28.62	2	0	Median	0.6357	0.61231	78.422	2	0	Median	0.73732	0.77107	17.019	2	0	Median	435810000	242320000	193490000	81375000	33670000	47706000	112200000	65256000	46944000	129020000	73670000	55352000	113220000	69724000	43493000	18765	5566	17775	114728;114729;114730;114731;114732;114733;114734;114735	155187;155188;155189;155190;155191;155192	155192			6	
GGNDSDELANGEVGGDRNEK	1	Unmodified	2031.873	0.87296817	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	18.828	18.406	3	3.0403E-14	15633	160511_QHF_FH_JSI11i_1	137.43	127.67			0.76959	0.88198	29.778	5	3	Median	1.3361	1.1357	NaN	1	1	Median	0.7608	0.88198	NaN	1	0	Median	1.0872	1.0319	52.735	2	2	Median	0.76959	0.80445	NaN	1	0	Median	333920000	186170000	147750000	27773000	14414000	13359000	101520000	61702000	39820000	128180000	65851000	62325000	76449000	44199000	32250000	18766	2899	17776	114736;114737;114738;114739;114740	155193;155194;155195;155196;155197;155198;155199;155200	155194			8	
GGNFGFGDSR	0	Unmodified	1012.4363	0.43625733	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	5	6	6	6	32.655	27.972	2	3.9935E-34	23626	160511_QHF_FH_JSI12i_2	207.29	190.05			0.94767	0.98054	17.269	22	0	Median	1.2018	1.001	3.1162	5	0	Median	0.87986	1.0468	11.724	6	0	Median	1.0673	1.0523	14.119	5	0	Median	0.71395	0.76405	4.9648	6	0	Median	10425000000	5319800000	5105200000	1615600000	743340000	872210000	1994700000	1096800000	897960000	3602900000	1728100000	1874900000	3211800000	1751600000	1460100000	18767	1212	17777	114741;114742;114743;114744;114745;114746;114747;114748;114749;114750;114751;114752;114753;114754;114755;114756;114757;114758;114759;114760;114761;114762;114763	155201;155202;155203;155204;155205;155206;155207;155208;155209;155210;155211;155212;155213;155214;155215;155216;155217;155218;155219;155220;155221;155222;155223;155224;155225;155226;155227;155228;155229;155230;155231;155232;155233;155234;155235;155236;155237;155238;155239;155240;155241;155242;155243;155244;155245;155246;155247	155207			47	
GGNFGGR	0	Unmodified	663.30887	0.30887197	936;1763	P09651;Q32P51;P51991	HNRNPA1;HNRNPA1L2;HNRNPA3	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoprotein A3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.6	3	5	4				1	4	4	4	6	6	5	5.0805	1.0315	2	8.4067E-21	2661	160511_QHF_FH_JSI10i_3	184.24	74.364			0.90717	1.0099	21.034	20	1	Median	1.2098	1.0205	8.6812	4	0	Median	0.8777	1.0257	11.997	6	0	Median	1.1319	1.0861	19.487	5	1	Median	0.68393	0.74018	20.507	5	0	Median	15363000000	8011900000	7350700000	2630600000	1116200000	1514300000	5329800000	2742600000	2587200000	4421300000	2234500000	2186800000	2980900000	1918500000	1062300000	18768	936;1763	17778	114764;114765;114766;114767;114768;114769;114770;114771;114772;114773;114774;114775;114776;114777;114778;114779;114780;114781;114782;114783;114784	155248;155249;155250;155251;155252;155253;155254;155255;155256;155257;155258;155259;155260;155261;155262;155263;155264;155265;155266;155267;155268;155269;155270;155271;155272;155273;155274;155275;155276;155277;155278;155279;155280;155281	155255			34	
GGNIGDGGGAADR	0	Unmodified	1115.4956	0.49556312	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.14	4	4				3				2	3	3	3	8.2184	5.9516	2	8.7199E-31	5403	160511_QHF_FH_JSI12i_1	191.53	136.98			0.79297	0.87392	17.519	11	1	Median	1.4015	1.1737	30.77	2	0	Median	0.74438	0.88035	3.032	3	1	Median	0.8907	0.85188	7.4918	3	0	Median	0.69502	0.73717	8.5627	3	0	Plateau	4886600000	2593200000	2293400000	1449600000	671890000	777740000	1393800000	817220000	576620000	1150100000	581530000	568600000	892980000	522510000	370470000	18769	1846	17779	114785;114786;114787;114788;114789;114790;114791;114792;114793;114794;114795	155282;155283;155284;155285;155286;155287;155288;155289;155290;155291;155292;155293;155294;155295;155296;155297	155286			16	
GGNLTLLHFLLGLK	1	Unmodified	1494.8922	0.89223446	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									8	2	3	3		95.464	87.613	2;3	1.5182E-50	49082	160513_QHF_FH_JSI11Kac_6	194.48	168.76			1.0136	0.95833	7.3432	5	4	Median	1.214	1.0405	NaN	1	1	Median	0.77104	0.90954	0.20042	2	2	Median	1.0674	1.0091	7.2992	2	1	Median	NaN	NaN	NaN	0	0	Median	2587700000	1320200000	1267500000	535680000	239370000	296310000	956420000	531820000	424600000	1095600000	548980000	546580000	0	0	0	18770	405	17780	114796;114797;114798;114799;114800;114801;114802;114803	155298;155299;155300;155301;155302;155303;155304;155305	155299			7	
GGNMKEVFTR	1	Acetyl (K)	1179.5706	0.57064232	1017	P12277	CKB	Creatine kinase B-type	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		54.063	43.256	2	0.00058262	23839	160513_QHF_FH_JSI11Kac_5	90.05	75.844			0.30656	0.30424	66.394	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30656	0.30424	66.394	2	1	Median	NaN	NaN	NaN	0	0	Median	8291400	6321900	1969600	0	0	0	0	0	0	8291400	6321900	1969600	0	0	0	18771	1017	17781	114804;114805	155306;155307	155307	828		2	
GGNNSFTHEALTLK	1	Unmodified	1487.7369	0.73685603	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.88		5	6						2	3	3	4	3	42.498	40.403	2;3	5.3613E-30	35252	160511_QHF_FH_JSI11i_3	203.39	186.23			0.90159	0.92431	35.863	13	5	Median	1.4941	1.2028	31.038	3	1	Median	0.90159	1.1328	10.168	3	2	Plateau	1.027	0.94945	54.579	4	1	Median	0.85668	0.8752	4.0239	3	1	Plateau	3076700000	1541600000	1535100000	75353000	33924000	41429000	395100000	217240000	177870000	1023200000	484180000	539040000	1583000000	806260000	776750000	18772	899	17782	114806;114807;114808;114809;114810;114811;114812;114813;114814;114815;114816;114817;114818	155308;155309;155310;155311;155312;155313;155314;155315;155316;155317;155318;155319;155320;155321;155322	155310			15	
GGNNSFTHEALTLKYK	2	Acetyl (K)	1820.9057	0.90571227	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.075	56.436	3	3.53E-05	30595	160513_QHF_FH_JSI11Kac_6	93.738	82.124			0.48887	0.46346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48887	0.46346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17643000	12475000	5168000	0	0	0	0	0	0	17643000	12475000	5168000	0	0	0	18773	899	17783	114819	155323	155323	655		1	
GGNPFLFR	0	Unmodified	906.47119	0.47118627	4826	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				54.351	52.776	2	0.0095552	43297	160511_QHF_FH_JSI9i_3	56.011	38.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18774	4826	17784	114820	155324	155324			1	
GGNRFEPYANPTK	1	Unmodified	1449.7001	0.70007659	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.416	24.077	3	0.00031671	19456	160511_QHF_FH_JSI9i_3	68.168	55.4			1.507	1.2269	NaN	1	0	Median	1.507	1.2269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56705000	28245000	28461000	56705000	28245000	28461000	0	0	0	0	0	0	0	0	0	18775	1765	17785	114821	155325;155326	155326			2	
GGNVGYGEPSDQADVVMSMTTDDFVK	1	Unmodified	2718.1789	0.17891152	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	90.824	90.402	2;3	8.794E-19	81994	160511_QHF_FH_JSI10i_1	104.44	93.65			1.0451	1.0199	4.7187	4	0	Median	1.2573	1.0304	NaN	1	0	Median	0.85983	1.0095	NaN	1	0	Median	1.1356	1.1022	NaN	1	0	Median	0.96174	0.98843	NaN	1	0	Median	319000000	158770000	160240000	47518000	18004000	29514000	93146000	51928000	41218000	81866000	38273000	43593000	96474000	50560000	45914000	18776	3175	17786	114822;114823;114824;114825;114826;114827;114828	155327;155328;155329;155330;155331;155332;155333	155330			4	
GGPAEGQLQENDR	0	Unmodified	1369.6222	0.6222202	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			14.37	14.129	2	2.9115E-07	11525	160511_QHF_FH_JSI9i_1	97.734	83.067			0.69655	0.78472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69655	0.78472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18073000	9584700	8487800	0	0	0	18073000	9584700	8487800	0	0	0	0	0	0	18777	2253	17787	114829;114830	155334;155335	155335			1	
GGPAKANSNPFEVK	2	Acetyl (K)	1456.731	0.73104237	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	53.776	44.636	2	0.0038718	23924	160513_QHF_FH_JSI12Kac_3	63.408	46.835			1.2272	1.323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2272	1.323	NaN	1	0	Median	2611000	1150600	1460300	0	0	0	0	0	0	0	0	0	2611000	1150600	1460300	18778	2081	17788	114831	155336	155336	2168		1	
GGPAQDLTFR	0	Unmodified	1060.5302	0.53015772	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	38.487	37.534	2	0.0002206	32027	160511_QHF_FH_JSI11i_2	81.263	66.597			1.1013	0.95286	13.676	4	1	Linear	0.95089	0.82931	NaN	1	0	Median	0.69796	0.867	NaN	1	1	Median	1.1107	1.0936	NaN	1	0	Median	0.96634	1.0472	NaN	1	0	Median	127700000	60886000	66815000	28335000	14457000	13878000	24430000	13808000	10622000	42229000	17832000	24397000	32707000	14790000	17917000	18779	3146	17789	114832;114833;114834;114835	155337;155338;155339;155340	155339			4	
GGPASVPSSSPGTSVK	1	Unmodified	1413.71	0.70997257	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.997	24.438	2	2.9333E-05	21390	160511_QHF_FH_JSI10i_1	101.6	84.159			0.86038	0.91027	12.132	4	1	Median	1.1133	0.91942	NaN	1	0	Median	0.84632	1.0036	NaN	1	0	Median	0.77341	0.7517	NaN	1	1	Median	0.87466	0.90121	NaN	1	0	Median	436690000	227620000	209070000	93959000	42081000	51878000	111710000	61278000	50435000	96485000	51964000	44520000	134530000	72300000	62235000	18780	312	17790	114836;114837;114838;114839	155341;155342;155343;155344;155345;155346;155347;155348;155349	155346			9	
GGPDFSNLEK	1	Unmodified	1062.4982	0.49818889	3781	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		39.28	38.938	2	0.0042197	34940	160511_QHF_FH_JSI11i_1	66.683	49.907			1.1752	1.2704	2.119	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0549	1.2515	NaN	1	1	Median	1.3092	1.2896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	354360000	164040000	190320000	0	0	0	174170000	84904000	89266000	180190000	79135000	101050000	0	0	0	18781	3781	17791	114840;114841	155350;155351	155350			2	
GGPEPTPLVQTFLR	0	Unmodified	1510.8144	0.81437807	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.881	82.028	2	0.00013174	72212	160511_QHF_FH_JSI11i_2	99.283	92.75			1.2682	1.3189	6.9753	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3938	1.3856	NaN	1	0	Median	1.1538	1.2555	NaN	1	0	Median	67759000	27790000	39969000	0	0	0	0	0	0	42778000	17809000	24968000	24982000	9980700	15001000	18782	1476	17792	114842;114843	155352;155353	155353			2	
GGPEVQQVPAGERPLWFICSGMGTQWR	0	Unmodified	3042.4593	0.45926474	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1				By MS/MS	16	0									1				1	88.107	78.665	3	0.00063757	42162	160513_QHF_FH_JSI12Kac_6	70.761	44.756			1.2552	1.3493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2552	1.3493	NaN	1	1	Median	17780000	6207600	11572000	0	0	0	0	0	0	0	0	0	17780000	6207600	11572000	18783	1650	17793	114844	155354	155354			1	
GGPGGELPR	0	Unmodified	838.42972	0.42971539	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	3						3			1	2	2	1	19.374	14.977	2	0.0012639	12686	160511_QHF_FH_JSI9i_1	69.812	42.682			0.99454	1.0805	8.0462	6	2	Median	1.3673	1.1338	NaN	1	0	Median	0.91408	1.0917	8.2558	2	1	Median	1.1052	1.0842	13.073	2	1	Median	0.92019	1.0005	NaN	1	0	Median	744090000	380190000	363890000	191520000	87772000	103750000	278780000	154720000	124060000	264980000	132880000	132100000	8799900	4821500	3978300	18784	2217	17794	114845;114846;114847;114848;114849;114850	155355;155356;155357;155358;155359;155360	155359			6	
GGPGGGFRPFVPHIPFDFYLCEMAFPR	0	Unmodified	3067.4626	0.4625592	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.653	89.933	4	6.9115E-19	51901	160513_QHF_FH_JSI10Kac_6	100.88	93.848			0.47448	0.56877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47448	0.56877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96077000	45577000	50500000	0	0	0	96077000	45577000	50500000	0	0	0	0	0	0	18785	2324	17795	114851	155361	155361			0	
GGPGGPGGPGGPMGR	0	Unmodified	1206.5564	0.55638924	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.29	1	4	2					1		1	2	4	1	19.749	18.029	2	3.3072E-10	15212	160511_QHF_FH_JSI11i_3	152.28	147.12			1.2099	1.1204	19.989	8	1	Median	1.2529	1.0605	NaN	1	0	Median	0.71252	0.85547	8.3891	2	0	Median	1.3507	1.2889	11.875	4	1	Median	1.0034	1.0978	NaN	1	0	Median	357210000	166690000	190520000	65040000	28862000	36178000	66230000	40997000	25233000	204360000	84946000	119410000	21578000	11883000	9694400	18786	2178	17796	114852;114853;114854;114855;114856;114857;114858;114859	155362;155363;155364;155365;155366;155367;155368;155369;155370;155371;155372	155362			10	
GGPGGPGGPGGPMGR	0	Oxidation (M)	1222.5513	0.55130386	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	1	0		By matching	By MS/MS		1.67	0.471	1	2									1	2		18.855	18.316	2	0.016324	15558	160511_QHF_FH_JSI11i_1	51.276	32.965			1.2181	1.3101	74.929	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8453	2.2255	NaN	1	0	Median	0.80404	0.77129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22657000	9985700	12672000	0	0	0	7772900	3159500	4613500	14884000	6826300	8058000	0	0	0	18787	2178	17796	114860;114861;114862	155373;155374	155373		1826	2	
GGPGLPLPPL	0	Unmodified	916.5382	0.53820321	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.14	94.839	2	0.0060245	84092	160511_QHF_FH_JSI9i_1	62.842	44.111			1.0795	1.0839	20.936	4	2	Median	1.6125	1.3513	NaN	1	1	Median	0.77146	0.82339	NaN	1	0	Median	1.0656	1.0174	NaN	1	0	Median	1.0937	1.1548	NaN	1	1	Median	32398000	15954000	16444000	7544100	3774700	3769400	8410400	4718200	3692200	10302000	4617100	5685400	6140600	2843700	3296900	18788	4771	17797	114863;114864;114865;114866	155375;155376;155377;155378	155378			4	
GGPGPGPGPYHR	0	Unmodified	1147.5523	0.55229014	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				11.682	10.885	3	4.943E-05	8367	160511_QHF_FH_JSI9i_3	74.944	69.846			0.99762	0.79232	NaN	1	0	Median	0.99762	0.79232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29973000	16357000	13616000	29973000	16357000	13616000	0	0	0	0	0	0	0	0	0	18789	4206	17798	114867	155379;155380	155379			2	
GGPGSAVSPYPTFNPSSDVAALHK	1	Unmodified	2355.1495	0.14952437	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.3	6	7	8					3	2	6	4	10	6	70.757	68.156	2;3;4	4.7072E-63	61361	160511_QHF_FH_JSI11i_3	218.72	210.24			0.99674	0.98261	20.799	23	5	Median	1.1507	0.94742	13.61	6	1	Median	0.81309	0.97524	2.7415	3	0	Plateau	1.0164	1.0006	31.731	9	2	Median	0.99674	1.0235	7.0722	5	2	Median	13512000000	6803900000	6708300000	2185100000	973940000	1211200000	2094900000	1143100000	951720000	4745800000	2321800000	2424000000	4486500000	2365000000	2121500000	18790	805	17799	114868;114869;114870;114871;114872;114873;114874;114875;114876;114877;114878;114879;114880;114881;114882;114883;114884;114885;114886;114887;114888;114889;114890;114891;114892;114893	155381;155382;155383;155384;155385;155386;155387;155388;155389;155390;155391;155392;155393;155394;155395;155396;155397;155398;155399;155400;155401;155402;155403;155404;155405;155406;155407;155408;155409;155410;155411;155412;155413;155414;155415;155416;155417;155418;155419;155420;155421;155422;155423;155424;155425;155426;155427;155428;155429;155430;155431;155432;155433;155434;155435;155436	155383			56	
GGPGSAVSPYPTFNPSSDVAALHKAIMVK	2	Acetyl (K)	2939.4851	0.48512836	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		87.699	78.369	3	3.5743E-36	43681	160513_QHF_FH_JSI11Kac_6	202.17	187.23			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57302000	57302000	0	0	0	0	0	0	0	57302000	57302000	0	0	0	0	18791	805	17800	114894	155437;155438	155438	439		2	
GGPGSTLSFVGK	1	Unmodified	1105.5768	0.57677356	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.2	3	4	5				2	6		3	7	6	4	49.734	45.831	2	2.432E-16	39086	160511_QHF_FH_JSI12i_3	166.19	123.1			0.94477	0.93448	10.559	16	3	Median	1.1866	1.011	9.3873	3	0	Median	0.76756	0.92485	9.1601	4	2	Median	1.0214	1.0027	5.5057	5	1	Median	0.77023	0.86264	13.484	4	0	Median	2199600000	1131600000	1068000000	227660000	102550000	125110000	421200000	216640000	204560000	673210000	323690000	349520000	877500000	488690000	388820000	18792	4349	17801	114895;114896;114897;114898;114899;114900;114901;114902;114903;114904;114905;114906;114907;114908;114909;114910;114911;114912;114913;114914	155439;155440;155441;155442;155443;155444;155445;155446;155447;155448;155449;155450;155451;155452;155453;155454;155455;155456;155457;155458;155459;155460;155461;155462;155463	155463			22	
GGPLQALTR	0	Unmodified	911.51886	0.51886475	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.899	38.103	2	1.5643E-07	31130	160511_QHF_FH_JSI9i_3	155.1	122.26			0.95707	0.96479	7.4663	4	1	Median	1.2439	0.99276	NaN	1	0	Median	0.79965	0.93761	NaN	1	0	Median	1.0723	1.0092	NaN	1	0	Median	0.85422	0.85542	NaN	1	1	Median	692000000	352700000	339310000	254280000	121130000	133140000	215520000	116260000	99258000	133080000	67492000	65587000	89127000	47809000	41318000	18793	1527	17802	114915;114916;114917;114918	155464;155465;155466;155467;155468	155466			5	
GGPNIITLADIVK	1	Unmodified	1309.7606	0.76055158	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	2	3	3	93.901	93.561	2	2.3398E-15	80813	160511_QHF_FH_JSI12i_2	161.19	147.6			0.98571	1.0352	10.274	10	0	Median	1.2691	1.0622	4.5159	2	0	Median	0.87002	1.0294	12.382	2	0	Median	1.0307	1.0416	9.6997	3	0	Median	0.84355	0.93559	15.107	3	0	Median	598620000	303150000	295470000	83521000	34179000	49341000	124320000	62062000	62258000	221710000	111310000	110400000	169070000	95597000	73474000	18794	2076	17803	114919;114920;114921;114922;114923;114924;114925;114926;114927;114928	155469;155470;155471;155472;155473;155474;155475;155476;155477;155478;155479;155480;155481;155482;155483;155484;155485;155486	155472			17	
GGPNIITLADIVKDPVSR	1	Unmodified	1864.0418	0.04181182	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	94.385	93.983	3	0.0015354	83537	160511_QHF_FH_JSI11i_3	49.606	40.663			0.55015	0.52569	19.23	6	0	Median	0.68262	0.57749	33.46	2	0	Median	0.49105	0.5992	21.337	2	0	Median	0.57799	0.5363	NaN	1	0	Median	0.4803	0.49612	NaN	1	0	Median	191000000	116990000	74013000	61718000	36646000	25072000	45990000	29580000	16410000	68409000	41518000	26891000	14881000	9240800	5640300	18795	2076	17804	114929;114930;114931;114932;114933;114934	155487;155488;155489;155490;155491	155487			5	
GGPNYQEGLR	0	Unmodified	1089.5203	0.52032131	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		27.904	19.895	2	0.019162	12548	160513_QHF_FH_JSI11Kac_4	60.019	34.882			1.1673	1.1457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1673	1.1457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6260400	2663500	3596900	0	0	0	0	0	0	6260400	2663500	3596900	0	0	0	18796	1798	17805	114935	155492	155492			1	
GGPPFAFVEFEDPRDAEDAVYGR	0	Unmodified	2540.1608	0.16081734	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	96.352	96.151	3	2.2221E-14	84328	160511_QHF_FH_JSI11i_2	115.46	115.46			0.77551	0.78768	15.919	6	0	Median	0.96728	0.82386	6.5012	2	0	Median	0.65353	0.78851	NaN	1	0	Median	0.87131	0.89283	NaN	1	0	Median	0.61648	0.65867	20.517	2	0	Median	1015200000	600390000	414830000	203010000	97259000	105750000	145010000	88901000	56110000	136980000	60241000	76738000	530210000	353990000	176230000	18797	2260	17806	114936;114937;114938;114939;114940;114941	155493;155494;155495;155496;155497;155498;155499;155500;155501	155498			9	
GGPPGPPISR	0	Unmodified	933.50321	0.50321468	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.71	3	5	1				1			3	2	3	2	24.13	22.512	2	0.0027736	18917	160511_QHF_FH_JSI11i_2	57.859	39.823			0.88978	0.94761	17.528	9	2	Median	1.4635	1.2178	28.721	2	1	Median	0.79082	0.94909	0.21984	2	0	Median	0.88978	0.86528	7.821	3	1	Median	0.87224	0.95144	1.8665	2	0	Median	667180000	348640000	318540000	149050000	56772000	92274000	195500000	107790000	87703000	124180000	65013000	59166000	198460000	119060000	79396000	18798	2217	17807	114942;114943;114944;114945;114946;114947;114948;114949;114950;114951	155502;155503;155504;155505;155506;155507;155508;155509;155510;155511;155512;155513	155513			11	
GGPPGQFHDNANGGQNGTVQEIMIPAGK	1	Unmodified	2790.3144	0.31437464	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							1	2	3	3	58.386	57.787	3	2.4135E-36	51159	160511_QHF_FH_JSI11i_3	161.68	160.11			0.83357	0.91895	13.934	8	1	Median	1.2217	1.078	NaN	1	0	Median	0.80864	0.96205	3.3052	2	0	Median	0.85925	0.85049	21.584	3	0	Median	0.8092	0.8581	6.51	2	1	Median	611380000	314230000	297150000	102310000	43861000	58453000	105080000	53277000	51803000	273240000	138160000	135080000	130750000	78934000	51813000	18799	3911	17808	114952;114953;114954;114955;114956;114957;114958;114959;114960	155514;155515;155516;155517;155518;155519;155520;155521;155522;155523;155524;155525;155526;155527;155528;155529;155530;155531	155515			17	
GGPPGQFHDNANGGQNGTVQEIMIPAGK	1	Oxidation (M)	2806.3093	0.30928926	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	52.813	52.578	3	0.00055407	45079	160511_QHF_FH_JSI12i_3	42.708	40.131			0.74175	0.80731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74175	0.80731	NaN	1	1	Median	10459000	7188300	3270200	0	0	0	0	0	0	0	0	0	10459000	7188300	3270200	18800	3911	17808	114961	155532	155532		2341	1	
GGPPPER	0	Unmodified	708.35549	0.35548781	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		4.9605	4.6557	2	0.0078525	2555	160511_QHF_FH_JSI10i_1	85.89	29.864			1.0061	1.0386	7.4983	3	0	Plateau	1.3592	1.113	NaN	1	0	Median	0.93381	1.1066	NaN	1	0	Median	1.0061	0.9747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2438600000	944730000	1493900000	700660000	266650000	434010000	856000000	309500000	546500000	881930000	368580000	513350000	0	0	0	18801	3213	17809	114962;114963;114964	155533;155534;155535	155535			3	
GGPPPPNWR	0	Unmodified	976.4879	0.48789897	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		23.6	23.6	2	0.019651	20032	160511_QHF_FH_JSI11i_3	44.447	32.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18802	442	17810	114965	155536	155536			1	
GGPPSQGGK	1	Unmodified	783.38752	0.38751622	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	4.5809	4.3542	2	0.013899	2175	160511_QHF_FH_JSI12i_1	45.972	25.452			1.0675	1.2596	20.348	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0675	1.2596	NaN	1	0	Median	1.0209	1.0088	NaN	1	0	Median	0.79563	0.83897	NaN	1	0	Median	705780000	369600000	336180000	0	0	0	257230000	123070000	134160000	228230000	119140000	109090000	220320000	127390000	92934000	18803	2617	17811	114966;114967;114968	155537;155538	155538			2	
GGPRPVSSSIDPSLLSTK	1	Unmodified	1796.9632	0.96322715	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			54.922	53.362	3	0.0002248	43691	160511_QHF_FH_JSI9i_3	54.103	43.445			0.97756	0.80491	15.29	3	2	Plateau	0.97756	0.80491	NaN	1	0	Median	0.75473	0.86775	20.734	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48664000	22357000	26307000	21711000	8666900	13044000	26953000	13690000	13264000	0	0	0	0	0	0	18804	3643	17812	114969;114970;114971	155539;155540;155541;155542;155543	155541			5	
GGPSHSAGANLR	0	Unmodified	1122.553	0.55301842	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			6.7725	6.2517	2	0.0001869	4235	160511_QHF_FH_JSI10i_3	81.338	70.923			0.95686	1.0905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95686	1.0905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13898000	6581400	7316300	0	0	0	13898000	6581400	7316300	0	0	0	0	0	0	18805	4792	17813	114972	155544	155544			1	
GGPSPGDVEAIK	1	Unmodified	1125.5666	0.5666028	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.912	33.309	2	2.7639E-12	30226	160511_QHF_FH_JSI12i_1	155.11	116.09			1.0488	1.0623	12.928	4	0	Median	1.337	1.0884	NaN	1	0	Median	0.87537	1.0367	NaN	1	0	Median	1.2567	1.2365	NaN	1	0	Median	0.8439	0.90434	NaN	1	0	Median	1781600000	819630000	961930000	433290000	156190000	277100000	485670000	262150000	223510000	454520000	194580000	259940000	408090000	206720000	201380000	18806	937	17814	114973;114974;114975;114976	155545;155546;155547;155548;155549;155550;155551;155552;155553	155548			9	
GGPTPQEAIQR	0	Unmodified	1152.5887	0.58873523	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		21.739	21.083	2	0.00031958	17787	160511_QHF_FH_JSI9i_1	147.4	126.88			0.21967	0.19288	19.844	2	2	Median	0.21169	0.16763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22794	0.22194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1735600000	1469400000	266270000	1009700000	858940000	150750000	0	0	0	725950000	610430000	115520000	0	0	0	18807	4708	17815	114977;114978	155554;155555	155555			2	
GGPTVDPEELFR	0	Unmodified	1315.6408	0.64083038	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	72.478	71.86	2	1.5408E-05	63945	160511_QHF_FH_JSI9i_1	93.325	82.801			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18808	4062	17816	114979;114980;114981	155556;155557;155558	155558			3	
GGPTVDPEELFRK	1	Unmodified	1443.7358	0.73579339	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.29	1	4	2					1		1	2	3	2	64.815	62.94	3	1.4413E-05	54163	160511_QHF_FH_JSI12i_2	107.65	101.99			1.0851	1.0762	10.82	8	1	Median	1.0968	0.93626	NaN	1	0	Median	0.97447	1.128	5.1942	2	1	Median	1.0975	1.0653	12.259	3	0	Median	1.0111	1.0585	12.534	2	0	Median	661830000	313140000	348690000	87699000	34773000	52926000	154060000	77690000	76367000	200020000	92661000	107350000	220060000	108010000	112040000	18809	4062	17817	114982;114983;114984;114985;114986;114987;114988;114989	155559;155560;155561;155562;155563;155564;155565;155566;155567;155568;155569;155570;155571;155572;155573	155562			15	
GGPVQVLEDEELK	1	Unmodified	1411.7195	0.71947463	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5.33	6	4					3			2	3	3	5	65.348	62.822	2;3	7.9397E-11	54693	160511_QHF_FH_JSI11i_2	177.04	166.52			0.89857	0.90755	16.065	11	3	Median	1.1482	0.95453	7.4617	2	1	Median	0.70408	0.82092	14.784	3	1	Median	1.1252	1.0904	19.244	3	0	Median	0.75096	0.83341	14.35	3	1	Median	1735800000	885280000	850530000	355720000	157740000	197980000	403740000	236090000	167650000	657800000	337820000	319980000	318560000	153640000	164930000	18810	2374	17818	114990;114991;114992;114993;114994;114995;114996;114997;114998;114999;115000;115001;115002	155574;155575;155576;155577;155578;155579;155580;155581;155582;155583;155584;155585;155586;155587;155588;155589;155590;155591;155592;155593;155594;155595	155591			22	
GGQAEKLGEK	2	Acetyl (K)	1057.5404	0.54038805	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		19.867	12.428	2	0.024146	8564	160513_QHF_FH_JSI11Kac_3	59.426	45.219			0.018818	0.0179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.018818	0.0179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1897000	1868500	28536	0	0	0	0	0	0	1897000	1868500	28536	0	0	0	18811	5502	17819	115003	155596	155596	3465		1	
GGQEPDRPPLSGFLPPITPPEK	1	Unmodified	2328.2114	0.21139634	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								1	2			86.74	86.207	3	0.0017887	76519	160511_QHF_FH_JSI10i_2	46.178	32.448			0.78197	0.94557	37.279	3	3	Median	0.61917	0.52784	NaN	1	1	Median	0.81973	0.99953	7.8478	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39964000	21820000	18144000	10566000	6686300	3879600	29398000	15133000	14264000	0	0	0	0	0	0	18812	5384	17820	115004;115005;115006	155597;155598;155599;155600	155600			4	
GGQFTIVFFK	1	Unmodified	1142.6124	0.61243078	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		84.649	75.332	2	0.0013044	41660	160513_QHF_FH_JSI11Kac_6	82.287	63.193			1.1755	1.0989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1755	1.0989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62777000	24667000	38110000	0	0	0	0	0	0	62777000	24667000	38110000	0	0	0	18813	3454	17821	115007	155601	155601			1	
GGQIGLQAPGLSVSGPQGHLESGSGK	1	Unmodified	2417.2299	0.22989995	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.77	2	5	3					1		1	4	4	2	61.946	60.315	3	4.2103E-60	53530	160511_QHF_FH_JSI11i_3	211.3	190.67			0.95946	0.99559	13.367	11	4	Median	1.1475	0.99559	NaN	1	0	Median	0.75278	0.92623	15.795	4	3	Linear	1.0572	1.05	12.19	4	1	Median	0.81734	0.87914	4.8451	2	0	Median	2358700000	1249800000	1108900000	282990000	132400000	150590000	696460000	389340000	307110000	838290000	421680000	416610000	540940000	306350000	234580000	18814	2286	17822	115008;115009;115010;115011;115012;115013;115014;115015;115016;115017;115018	155602;155603;155604;155605;155606;155607;155608;155609;155610;155611;155612;155613;155614;155615;155616;155617;155618;155619	155603			18	
GGQNSTAASTKYDVFR	1	Acetyl (K)	1742.8224	0.82237657	5431	Q9UMZ2	SYNRG	Synergin gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		61.023	50.149	2	9.6616E-07	27456	160513_QHF_FH_JSI10Kac_4	112.42	89.197			3.0999	3.7749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.0999	3.7749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10654000	4436000	6218300	0	0	0	8867900	2649600	6218300	1786300	1786300	0	0	0	0	18815	5431	17823	115019;115020	155620;155621	155620	3411		2	
GGQQALLQHWSEYIK	1	Unmodified	1756.8897	0.88966827	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	2	1	1		74.172	73.207	2;3	9.8832E-10	60401	160511_QHF_FH_JSI9i_3	146.07	131.91			0.58831	0.65884	46.848	3	2	Median	1.0692	0.89567	NaN	1	0	Median	0.58831	0.65884	NaN	1	1	Median	0.37591	0.35689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94086000	59894000	34192000	15737000	6599500	9137200	21706000	13826000	7879700	56644000	39469000	17175000	0	0	0	18816	2456	17824	115021;115022;115023;115024	155622;155623;155624;155625;155626	155624			5	
GGQTHLGLPVFNTVK	1	Unmodified	1566.8518	0.85182621	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		4	8						2	5	3	3	3	64.86	62.569	2;3	3.4632E-15	55209	160511_QHF_FH_JSI11i_3	166.6	152.3			0.90205	0.93486	13.64	12	2	Median	1.2421	1.038	10.386	4	1	Median	0.84396	0.99855	2.1603	2	0	Median	0.95118	0.90299	19.843	3	0	Median	0.85545	0.85654	1.1281	3	1	Plateau	4442000000	2315400000	2126600000	570280000	256800000	313480000	634070000	354790000	279280000	1433800000	739160000	694600000	1803900000	964680000	839240000	18817	1800	17825	115025;115026;115027;115028;115029;115030;115031;115032;115033;115034;115035;115036;115037;115038	155627;155628;155629;155630;155631;155632;155633;155634;155635;155636;155637;155638;155639;155640;155641;155642;155643;155644;155645;155646;155647;155648;155649;155650	155628			23	
GGQVIQIPVADITVGDIAQVK	1	Unmodified	2120.1841	0.18411896	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	101.17	101.09	3	1.128E-06	91649	160511_QHF_FH_JSI12i_1	76.704	61.112			0.53323	0.62023	29.507	3	0	Median	NaN	NaN	NaN	0	0	Median	0.53323	0.62023	NaN	1	0	Median	0.96981	0.94154	NaN	1	0	Median	0.51854	0.53248	NaN	1	0	Median	305440000	182620000	122820000	0	0	0	115150000	68746000	46401000	89346000	51898000	37448000	100950000	61981000	38971000	18818	1168	17826	115039;115040;115041	155651;155652	155651			2	
GGQVVNLMNQR	0	Unmodified	1214.619	0.6189895	2792	Q2M2I8	AAK1	AP2-associated protein kinase 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			38.302	36.828	2	0.003394	30728	160511_QHF_FH_JSI10i_3	58.676	39.896			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18819	2792	17827	115042	155653	155653			1	
GGQVYATNTR	0	Unmodified	1065.5203	0.52032131	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	9.953	8.1365	2	8.2804E-08	6754	160511_QHF_FH_JSI10i_1	123.21	97.634			0.61866	0.62161	22.754	5	2	Linear	1.0964	0.89982	NaN	1	1	Median	0.52483	0.61703	NaN	1	0	Median	0.76828	0.76557	32.43	2	1	Median	0.60983	0.62225	NaN	1	0	Median	405100000	236610000	168490000	75060000	36340000	38721000	113950000	67964000	45986000	132230000	83937000	48293000	83860000	48368000	35492000	18820	614	17828	115043;115044;115045;115046;115047	155654;155655;155656;155657;155658	155656			5	
GGQYENFR	0	Unmodified	969.43044	0.43044367	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	16.926	16.237	2	0.0071248	13099	160511_QHF_FH_JSI12i_2	60.478	49.109			1.2344	1.0264	12.943	4	0	Linear	1.1023	0.97465	NaN	1	0	Median	0.87162	1.0808	NaN	1	0	Median	1.1499	1.1905	NaN	1	0	Median	0.829	0.88224	NaN	1	0	Median	125170000	66323000	58849000	30800000	16319000	14481000	28162000	17123000	11038000	40017000	19896000	20121000	26194000	12985000	13209000	18821	3341	17829	115048;115049;115050;115051	155659;155660;155661;155662;155663	155659			5	
GGQYYNTK	1	Unmodified	929.4243	0.42429566	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	9.0231	7.22	2	0.0010799	5916	160511_QHF_FH_JSI11i_1	94.302	71.68			1.1071	1.227	34.055	5	1	Median	2.6273	2.1524	NaN	1	0	Median	1.1071	1.2865	NaN	1	0	Median	1.0302	1.0179	26.419	2	0	Median	1.0802	1.1108	NaN	1	1	Median	506070000	229730000	276340000	92343000	25633000	66710000	154250000	70766000	83484000	141880000	77090000	64791000	117590000	56241000	61354000	18822	3906	17830	115052;115053;115054;115055;115056	155664;155665;155666;155667	155664			4	
GGREDMDISK	1	Unmodified	1106.5026	0.50262234	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	2	6	4							2	3	4	3	11.337	11.076	2;3	6.3011E-06	8688	160511_QHF_FH_JSI11i_3	112.75	77.941			0.89313	1.0471	20.109	12	0	Median	1.3271	1.1457	7.0885	2	0	Median	0.88156	1.0742	8.8395	3	0	Median	0.76013	0.8651	19.016	4	0	Linear	0.83799	0.84559	33.332	3	0	Median	1167600000	592830000	574750000	154220000	62518000	91698000	245100000	128770000	116320000	428800000	230550000	198260000	339460000	170990000	168470000	18823	1649	17831	115057;115058;115059;115060;115061;115062;115063;115064;115065;115066;115067;115068	155668;155669;155670;155671;155672;155673;155674;155675;155676;155677;155678;155679	155668			12	
GGRGDVGSADIQDLEK	1	Unmodified	1615.7802	0.7801774	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.643	1	5	5							2	5	2	2	36.583	36.059	2;3	3.5666E-06	31634	160511_QHF_FH_JSI10i_2	90.731	54.772			0.99078	1.0259	15.644	8	1	Median	1.525	1.3166	4.6196	2	0	Median	0.85958	0.99893	4.7169	2	1	Median	1.1331	1.0672	6.5322	2	0	Median	0.8735	0.88994	2.1819	2	0	Median	860040000	410060000	449980000	169170000	66343000	102830000	113670000	58008000	55658000	392280000	192060000	200220000	184920000	93648000	91267000	18824	5669	17832	115069;115070;115071;115072;115073;115074;115075;115076;115077;115078;115079	155680;155681;155682;155683;155684;155685;155686;155687;155688;155689;155690;155691;155692;155693;155694	155692			15	
GGRPNEIEPPPPEMPPWQK	1	Unmodified	2155.0521	0.052058931	3614;2844	Q52LJ0;Q8NCA5	FAM98B;FAM98A	Protein FAM98B;Protein FAM98A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	3	1		60.838	59.997	3	6.2939E-06	50222	160511_QHF_FH_JSI10i_3	70.907	62.262			0.85171	0.88874	5.4424	4	2	Median	1.0486	0.87801	NaN	1	1	Median	0.78537	0.93116	4.876	2	1	Median	0.90939	0.84722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	302730000	151560000	151170000	67759000	30663000	37096000	140110000	64068000	76047000	94853000	56827000	38026000	0	0	0	18825	2844;3614	17833	115080;115081;115082;115083;115084;115085	155695;155696;155697;155698;155699;155700;155701;155702;155703;155704	155698			10	
GGRRIMGPR	0	Oxidation (M)	1014.5505	0.550516	4901	Q9NPG3	UBN1	Ubinuclein-1	yes	yes	0	0	1	2	By MS/MS				15	0								1		1				56.664	46.051	2	0.061119	24365	160513_QHF_FH_JSI9Kac_5	35.88	17.845			1.4836	1.366	NaN	1	0	Median	1.4836	1.366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	310610000	134170000	176440000	310610000	134170000	176440000	0	0	0	0	0	0	0	0	0	18826	4901	17834	115086	155705	155705			0	
GGSAAATSNPHHDNVR	0	Unmodified	1589.7295	0.72947924	4613	Q9GZY8	MFF	Mitochondrial fission factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			5.0632	4.6694	3;4	5.5316E-08	2546	160511_QHF_FH_JSI10i_3	101.53	82.932			1.594	1.3815	NaN	1	0	Median	1.594	1.3815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58319000	21257000	37062000	58319000	21257000	37062000	0	0	0	0	0	0	0	0	0	18827	4613	17835	115087;115088	155706;155707	155706			2	
GGSASVWSER	0	Unmodified	1034.4781	0.47812215	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6.33	6.13		2						1			1	2		21.348	20.501	2	1.5706E-06	17574	160511_QHF_FH_JSI10i_2	131.62	101.54			0.94509	1.1445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94509	1.1445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43245000	20875000	22371000	0	0	0	43245000	20875000	22371000	0	0	0	0	0	0	18828	3479	17836	115089;115090;115091	155708;155709;155710	155710			3	
GGSDDSSKDPIDVNYEK	2	Unmodified	1824.8014	0.80136636	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	36.305	33.418	2;3	1.6169E-40	29723	160511_QHF_FH_JSI11i_1	165.74	154.47			0.97659	1.2644	25.043	11	0	Linear	1.3202	1.0737	15.251	2	0	Median	0.97037	1.1523	39.291	3	0	Plateau	1.3507	1.3013	21.584	3	0	Plateau	0.9368	0.81921	13.396	3	0	Plateau	2504100000	1184400000	1319700000	455100000	226530000	228560000	771530000	355210000	416320000	744840000	340850000	403990000	532680000	261840000	270850000	18829	939	17837	115092;115093;115094;115095;115096;115097;115098;115099;115100;115101;115102	155711;155712;155713;155714;155715;155716;155717;155718;155719;155720;155721;155722;155723;155724;155725;155726;155727;155728;155729	155714			18	
GGSDGYGSGR	0	Unmodified	911.37332	0.37332272	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	5.85	14	3	1			22	5			13	10	13	9	3.7717	-1.2637	2	6.8369E-36	2260	160511_QHF_FH_JSI10i_1	211.45	94.047			1.0071	1.0144	29.116	41	5	Median	1.2905	1.0566	34.93	11	1	Median	0.92419	1.0848	15.579	10	2	Median	1.0628	1.0079	25.877	11	1	Median	0.73857	0.78514	22.77	9	1	Median	4459400000	2312800000	2146500000	730890000	311620000	419280000	1360700000	755610000	605100000	1157000000	527350000	629610000	1210800000	718260000	492550000	18830	1212	17838	115103;115104;115105;115106;115107;115108;115109;115110;115111;115112;115113;115114;115115;115116;115117;115118;115119;115120;115121;115122;115123;115124;115125;115126;115127;115128;115129;115130;115131;115132;115133;115134;115135;115136;115137;115138;115139;115140;115141;115142;115143;115144;115145;115146;115147	155730;155731;155732;155733;155734;155735;155736;155737;155738;155739;155740;155741;155742;155743;155744;155745;155746;155747;155748;155749;155750;155751;155752;155753;155754;155755;155756;155757;155758;155759;155760;155761;155762;155763;155764;155765;155766;155767;155768;155769;155770;155771;155772;155773;155774;155775;155776;155777;155778;155779;155780;155781;155782	155747			46	
GGSEKPK	2	Acetyl (K)	743.38137	0.38136821	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	5.4603	-1.7621	2	0.0014627	1540	160513_QHF_FH_JSI10Kac_2	111.82	65.445			0.86388	0.93879	9.4177	5	0	Median	NaN	NaN	NaN	0	0	Median	0.86513	1.0346	1.3509	2	0	Median	0.99043	0.93879	NaN	1	0	Median	0.80704	0.86004	3.3609	2	0	Median	150880000	77826000	73050000	0	0	0	62494000	31712000	30782000	4878200	2514600	2363600	83504000	43599000	39904000	18831	1117	17839	115148;115149;115150;115151;115152;115153	155783;155784;155785;155786;155787;155788	155785	968		6	
GGSFENNWNIYK	1	Unmodified	1427.647	0.64697839	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.09	3.82	3	5	2					1		1	3	5	2	57.894	57.243	2	1.467E-78	50197	160511_QHF_FH_JSI9i_2	250.75	194.49			0.96749	1.0108	9.6103	8	1	Median	1.3237	1.1292	NaN	1	0	Median	0.90918	1.1073	8.3575	2	0	Median	0.96338	0.97888	6.899	3	1	Plateau	0.84832	0.91713	1.9503	2	0	Median	1060700000	502750000	557900000	173740000	68158000	105580000	246900000	120830000	126070000	371980000	176850000	195130000	268030000	136910000	131120000	18832	1129	17840	115154;115155;115156;115157;115158;115159;115160;115161;115162;115163;115164	155789;155790;155791;155792;155793;155794;155795;155796;155797;155798;155799;155800;155801;155802;155803;155804;155805;155806;155807;155808;155809;155810;155811	155802			23	
GGSFGGR	0	Unmodified	636.29797	0.29797293	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	5.3147	4.8256	2	0.0021173	2745	160511_QHF_FH_JSI12i_2	113.08	57.057			0.95316	1.0984	35.88	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1506	1.4157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7896	0.8523	NaN	1	0	Median	682250000	353410000	328840000	0	0	0	448800000	226350000	222450000	0	0	0	233450000	127060000	106390000	18833	1763	17841	115165;115166;115167	155812;155813;155814	155812			3	
GGSGGGGEGIQDR	0	Unmodified	1145.5061	0.50612781	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	6.8359	4.7	2	8.1167E-08	2897	160513_QHF_FH_JSI11Kac_3	107.83	82.908			0.93059	0.93736	14.048	4	2	Median	1.0798	0.89697	NaN	1	0	Median	0.80197	0.97958	NaN	1	1	Median	1.1509	1.1222	NaN	1	0	Median	0.7841	0.80508	NaN	1	1	Median	179500000	93637000	85863000	45538000	20747000	24791000	66021000	32244000	33777000	2904700	1350500	1554200	65038000	39296000	25741000	18834	384	17842	115168;115169;115170;115171	155815;155816;155817;155818;155819;155820	155817			6	
GGSGSGPTIEEVD	0	Unmodified	1203.5255	0.52552585	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.13	4			3	1					1	2	2	3	37.747	33.002	2	1.681E-12	13475	160513_QHF_FH_JSI11Kac_1	129.38	120.64			1.0347	1.0605	15.054	8	1	Median	1.4672	1.21	NaN	1	0	Median	0.87774	1.0277	1.4026	2	0	Median	1.1236	1.0873	0.47934	2	0	Median	0.96766	1.0267	25.345	3	1	Median	3363300000	1623700000	1739500000	733820000	294200000	439620000	902720000	466470000	436250000	1064100000	495640000	568500000	662580000	367400000	295180000	18835	954	17843	115172;115173;115174;115175;115176;115177;115178;115179	155821;155822;155823;155824;155825;155826;155827;155828;155829;155830;155831	155829			11	
GGSGSHNWGTVK	1	Unmodified	1185.5527	0.55268407	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							2	4	2	2	10.528	10.191	2;3	1.1154E-64	7327	160511_QHF_FH_JSI12i_3	227.94	214.91			0.94456	0.8977	64.658	9	2	Median	3.8149	3.093	11.051	2	1	Median	0.51539	0.60345	6.9373	3	1	Median	0.9351	0.86323	5.5383	2	0	Median	0.96445	0.98691	2.952	2	0	Median	1632800000	744480000	888360000	187740000	42217000	145520000	389330000	232560000	156770000	517820000	238320000	279490000	537960000	231380000	306580000	18836	3609	17844	115180;115181;115182;115183;115184;115185;115186;115187;115188;115189	155832;155833;155834;155835;155836;155837;155838;155839;155840;155841;155842;155843;155844;155845;155846	155845			15	
GGSHDAPENTLAAIR	0	Unmodified	1507.7379	0.73791866	5148	Q9NZC3	GDE1	Glycerophosphodiester phosphodiesterase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		33.271	32.872	3	4.4317E-05	27968	160511_QHF_FH_JSI11i_2	81.908	78.435			0.83525	0.83304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83525	0.83304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45222000	26767000	18455000	0	0	0	0	0	0	45222000	26767000	18455000	0	0	0	18837	5148	17845	115190;115191	155847;155848;155849;155850	155849			4	
GGSISVQVNSIK	1	Unmodified	1187.651	0.65100113	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.615	40.995	2	0.00022166	37164	160511_QHF_FH_JSI12i_1	94.66	72.423			1.1871	1.2611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1871	1.2611	NaN	1	1	Median	44980000	22280000	22700000	0	0	0	0	0	0	0	0	0	44980000	22280000	22700000	18838	2586	17846	115192	155851	155851			1	
GGSLPKVEAK	2	Acetyl (K)	1026.571	0.5709599	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	37.676	28.888	2	0.00076283	16441	160513_QHF_FH_JSI12Kac_3	89.029	17.649			0.31388	0.30826	74.057	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9166	1.065	NaN	1	0	Median	0.31388	0.30826	NaN	1	0	Median	0.2577	0.28404	NaN	1	0	Median	29671000	20438000	9233200	0	0	0	6128800	3036600	3092200	18232000	13318000	4913800	5310500	4083300	1227200	18839	857	17847	115193;115194;115195	155852;155853;155854;155855;155856;155857	155854	544;545		6	
GGSMHMYAK	1	Oxidation (M)	996.41572	0.41572158	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									2	1	8.5099	8.5417	2;3	0.00045104	3157	160511_QHF_FH_JSI12i_3	83.313	78.957			1.4945	1.3799	30.234	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6478	1.5421	15.714	2	0	Median	0.93823	0.94756	NaN	1	0	Median	260760000	126260000	134490000	0	0	0	0	0	0	174750000	83194000	91554000	86010000	43070000	42940000	18840	903	17848	115196;115197;115198	155858;155859;155860	155860		479;480	3	
GGSMHMYAK	1	Unmodified	980.42081	0.42080696	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.38	3.69	1	6	5						1	3	3	4	3	10.738	9.7302	2;3	0.00017006	7322	160511_QHF_FH_JSI12i_3	75.378	64.505			1.0124	0.98959	19.494	13	0	Median	1.6787	1.4328	17.378	3	0	Median	0.76637	0.93903	18.932	3	0	Median	1.0511	1.009	9.698	4	0	Median	0.9737	0.98959	13.214	3	0	Plateau	3475100000	1701700000	1773400000	298700000	114700000	184000000	281350000	138960000	142390000	1218800000	625180000	593650000	1676200000	822840000	853360000	18841	903	17848	115199;115200;115201;115202;115203;115204;115205;115206;115207;115208;115209;115210;115211	155861;155862;155863;155864;155865;155866;155867;155868;155869;155870	155870			9	
GGSMLGTK	1	Unmodified	749.37417	0.37417435	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		15.9	8.2791	2	0.01062	6831	160513_QHF_FH_JSI11Kac_4	60.118	32.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18842	1129	17849	115212	155871	155871			1	
GGSPFAIVITQQHQIHR	0	Unmodified	1888.0068	0.006763718	4853	Q9HCD5	NCOA5	Nuclear receptor coactivator 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	65.351	56.185	3;4	6.2774E-24	30704	160513_QHF_FH_JSI10Kac_6	147.64	129.18			0.98948	1.0134	6.0466	8	0	Median	1.174	1.0063	7.83	2	0	Median	0.86133	1.0134	1.5225	2	0	Median	1.1082	1.0648	3.4263	2	0	Median	0.87124	0.93471	2.6841	2	0	Median	746140000	368600000	377540000	127210000	52350000	74858000	406210000	212280000	193930000	129350000	61698000	67655000	83367000	42275000	41093000	18843	4853	17850	115213;115214;115215;115216;115217;115218;115219;115220	155872;155873;155874;155875;155876;155877;155878;155879;155880;155881;155882;155883	155883			11	
GGSPYIAAK	1	Unmodified	862.45487	0.45486751	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	16.564	15.974	2	0.00163	13486	160511_QHF_FH_JSI10i_1	68.214	41.83			0.69668	0.82736	35.917	3	1	Median	1.2691	1.0436	NaN	1	0	Median	0.69668	0.82736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49873	0.51574	NaN	1	1	Median	351610000	203350000	148250000	100320000	44565000	55757000	133020000	74698000	58318000	0	0	0	118270000	84092000	34176000	18844	4023	17851	115221;115222;115223	155884;155885;155886	155885			2	
GGSRGEEVGELSR	0	Unmodified	1331.643	0.64295564	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			13.277	12.514	3	5.5992E-05	9931	160511_QHF_FH_JSI10i_3	85.163	61.091			0.92031	1.0544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92031	1.0544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73838000	32468000	41370000	0	0	0	73838000	32468000	41370000	0	0	0	0	0	0	18845	933	17852	115224	155887;155888	155888			2	
GGSSEIAFHTIPVIQR	0	Unmodified	1710.9053	0.90531834	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.518	63.232	3	2.0586E-07	54607	160511_QHF_FH_JSI12i_3	97.093	92.702			1.1963	1.2017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1963	1.2017	NaN	1	1	Median	161940000	87301000	74636000	0	0	0	0	0	0	0	0	0	161940000	87301000	74636000	18846	3073	17853	115225	155889	155889			1	
GGSSGAKFR	1	Acetyl (K)	907.45118	0.45117911	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	14.872	5.9028	2	3.9388E-24	5932	160513_QHF_FH_JSI10Kac_4	187	165.45			0.64362	0.71234	44.004	7	0	Median	1.21	1.005	NaN	1	0	Median	0.93579	1.1157	3.7403	2	0	Median	0.40874	0.40647	7.725	2	0	Median	0.62543	0.68948	4.613	2	0	Median	210010000	132110000	77900000	10268000	4007700	6260400	48195000	25824000	22371000	106460000	74132000	32328000	45087000	28145000	16941000	18847	2022	17854	115226;115227;115228;115229;115230;115231;115232	155890;155891;155892;155893;155894;155895;155896;155897	155892	2062		7	
GGSTTGSQFLEQFK	1	Unmodified	1485.71	0.70997257	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.6	6.05		1	2					2				3	2	65.159	60.716	2	1.4284E-33	52332	160511_QHF_FH_JSI11i_2	234.3	217.46			1.0053	1.0103	6.794	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0053	1.0103	5.4931	3	1	Median	0.96676	1.0295	11.147	2	0	Median	556220000	292260000	263960000	0	0	0	0	0	0	414160000	223860000	190300000	142050000	68397000	73656000	18848	2505	17855	115233;115234;115235;115236;115237	155898;155899;155900;155901;155902;155903;155904	155900			7	
GGSTVPK	1	Unmodified	644.34934	0.3493398	3830	Q92504	SLC39A7	Zinc transporter SLC39A7	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1.2	0.4	4	1								2	1	1	1	5.45	5.1109	2	0.02555	2725	160511_QHF_FH_JSI11i_1	54.525	17.938			1.0853	0.92691	16.264	5	0	Median	1.0314	0.85817	10.897	2	0	Median	0.73432	0.87891	NaN	1	0	Median	1.0952	1.0496	NaN	1	0	Median	1.1422	1.2086	NaN	1	0	Median	5037600000	2568900000	2468700000	380430000	187020000	193410000	3346600000	1765800000	1580800000	983870000	451730000	532130000	326720000	164370000	162350000	18849	3830	17856	115238;115239;115240;115241;115242	155905	155905			1	
GGSWIQEINVAEK	1	Unmodified	1429.7201	0.72014333	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	5.87	1	4	4					4		3	2	5	3	70.445	66.831	2	2.6805E-15	58150	160511_QHF_FH_JSI12i_3	159.99	120.97			0.83272	0.83702	18.85	10	4	Median	0.92722	0.78007	49.62	2	1	Median	0.729	0.88946	NaN	1	0	Median	0.88423	0.85188	7.6849	5	3	Median	0.68666	0.73443	0.099697	2	0	Median	789780000	411380000	378390000	122930000	51173000	71754000	137850000	77614000	60234000	308460000	165760000	142700000	220540000	116830000	103710000	18850	2094	17857	115243;115244;115245;115246;115247;115248;115249;115250;115251;115252;115253;115254;115255	155906;155907;155908;155909;155910;155911;155912;155913;155914;155915;155916;155917;155918;155919;155920;155921;155922;155923	155922			18	
GGSYVYELSAVLIHR	0	Unmodified	1662.873	0.87295558	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		84.759	75.442	3	0.0010572	41785	160513_QHF_FH_JSI11Kac_6	57.328	52.526			1.1155	1.0709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1155	1.0709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123310000	72718000	50588000	0	0	0	0	0	0	123310000	72718000	50588000	0	0	0	18851	3331	17858	115256	155924	155924			1	
GGTAVPTSQK	1	Unmodified	944.49271	0.49270958	4485	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	8.2716	8.0329	2	8.0131E-06	5955	160511_QHF_FH_JSI12i_1	123.35	86.96			0.71856	0.72952	4.5718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72104	0.70631	NaN	1	0	Median	0.71608	0.75348	NaN	1	0	Median	279730000	171270000	108460000	0	0	0	0	0	0	140250000	86535000	53711000	139490000	84734000	54752000	18852	4485	17859	115257;115258	155925	155925			1	
GGTGFAGSGVK	1	Unmodified	936.46649	0.46649483	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1				2	1	2	16.56	14.752	2	0.00025071	12400	160511_QHF_FH_JSI10i_1	78.759	53.022			0.68227	0.71663	25.137	5	1	Median	NaN	NaN	NaN	0	0	Median	0.53869	0.64228	15.491	2	0	Median	0.71393	0.70279	NaN	1	1	Median	0.84427	0.90446	32.604	2	0	Median	594020000	319690000	274320000	0	0	0	264560000	150210000	114350000	180960000	94871000	86087000	148500000	74608000	73891000	18853	5554	17860	115259;115260;115261;115262;115263	155926;155927;155928	155927			3	
GGTGLFELK	1	Unmodified	920.49673	0.49673232	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.758	53.24	2	0.0003079	45972	160511_QHF_FH_JSI11i_2	93.178	63.802			1.8357	1.8093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8357	1.8093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48374000	23599000	24775000	0	0	0	0	0	0	48374000	23599000	24775000	0	0	0	18854	708	17861	115264	155929	155929			1	
GGTILAPTVSAK	1	Unmodified	1113.6394	0.63937381	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.96	4	4				3	3			2	4	4	4	44.563	39.883	2	3.1889E-05	36125	160511_QHF_FH_JSI12i_1	106.4	26.234			0.91443	0.95415	13.523	14	0	Median	1.1611	0.95894	19.903	2	0	Median	0.84655	1.0272	10.693	4	0	Median	1.0267	0.96246	4.7325	4	0	Linear	0.73168	0.77167	12.13	4	0	Median	1315200000	709230000	605960000	309840000	160460000	149380000	338160000	181600000	156560000	360760000	186270000	174490000	306430000	180910000	125530000	18855	3216	17862	115265;115266;115267;115268;115269;115270;115271;115272;115273;115274;115275;115276;115277;115278	155930;155931;155932;155933;155934;155935;155936;155937;155938;155939;155940;155941;155942;155943;155944;155945;155946;155947;155948;155949;155950;155951;155952;155953;155954	155935			25	
GGTIVPR	0	Unmodified	698.40752	0.40752338	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.14	6.21	1	4	1				4	4		1	4	4	5	16.943	11.62	2	2.2457E-05	8291	160513_QHF_FH_JSI11Kac_4	130.05	94.945			0.88774	0.9442	19.329	14	2	Median	1.0872	0.92898	NaN	1	0	Median	0.75472	0.91447	9.0878	4	0	Median	0.9931	0.98516	8.0264	4	1	Median	0.86871	0.93452	31.338	5	1	Median	2680900000	1374400000	1306500000	449940000	186840000	263110000	423410000	235030000	188380000	1176500000	604910000	571610000	631060000	347660000	283400000	18856	2569	17863	115279;115280;115281;115282;115283;115284;115285;115286;115287;115288;115289;115290;115291;115292	155955;155956;155957;155958;155959;155960;155961;155962;155963;155964;155965;155966	155959			12	
GGTLKDDDWGNIK	2	Unmodified	1417.6838	0.68375782	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.506	37.343	2	0.013585	31766	160511_QHF_FH_JSI12i_3	80.979	55.32			0.79301	0.82023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79301	0.82023	NaN	1	1	Median	24109000	13806000	10303000	0	0	0	0	0	0	0	0	0	24109000	13806000	10303000	18857	1824	17864	115293	155967	155967			1	
GGTLTQYEGK	1	Unmodified	1052.5138	0.51383895	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	5.24	4	6					3			3	3	3	4	21.961	18.813	2	8.3638E-18	16012	160511_QHF_FH_JSI9i_1	145.9	109.14			0.8447	0.9159	49.055	9	6	Median	NaN	NaN	NaN	0	0	Median	0.77911	0.9159	56.339	3	2	Median	1.0682	1.0395	46.012	3	2	Median	0.8447	0.90318	63.919	3	2	Median	991600000	472110000	519490000	0	0	0	398690000	203050000	195640000	286710000	135430000	151280000	306200000	133640000	172570000	18858	2772	17865	115294;115295;115296;115297;115298;115299;115300;115301;115302;115303;115304;115305;115306	155968;155969;155970;155971;155972;155973;155974;155975;155976;155977;155978;155979;155980;155981	155976			12	
GGTMTDLDEQEDESMETTGKDEDENSTGNK	2	Unmodified	3262.2885	0.28853414	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.995	40.54	3	2.6153E-67	36350	160511_QHF_FH_JSI10i_1	207.86	207.34			1.0161	1.1406	9.6868	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97763	1.1849	NaN	1	0	Median	1.0161	0.98621	NaN	1	0	Median	1.1048	1.1406	NaN	1	0	Median	242410000	133840000	108570000	0	0	0	80894000	46796000	34099000	81223000	42881000	38343000	80290000	44159000	36132000	18859	3685	17866	115307;115308;115309	155982;155983;155984;155985;155986;155987;155988;155989;155990;155991	155991			10	
GGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTK	3	Unmodified	3805.5538	0.55380997	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	2		By MS/MS		By MS/MS	1	0	2										1		1	37.122	36.642	4	1.3562E-16	32812	160511_QHF_FH_JSI10i_1	84.962	80.43			0.87973	0.96679	7.4949	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8141	0.91689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95065	1.0194	NaN	1	0	Median	74441000	44154000	30287000	0	0	0	30422000	21401000	9021600	0	0	0	44019000	22754000	21265000	18860	3685	17867	115310;115311	155992;155993;155994	155994			3	
GGTNAEMAPQIDYTVMVFKPIVEK	2	Unmodified	2637.3182	0.31824596	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.575	1	7	3							2	3	3	3	100.3	100.21	3	6.2243E-23	88739	160511_QHF_FH_JSI10i_2	142.45	138.72			0.92148	0.98168	14.927	10	8	Median	1.0657	0.91422	15.825	2	2	Median	0.73578	0.90116	12.108	3	3	Median	1.1315	1.0908	14.469	2	1	Median	0.88776	0.97862	18.43	3	2	Median	552180000	308200000	243980000	76317000	38517000	37800000	106240000	60136000	46107000	110060000	56124000	53937000	259550000	153420000	106130000	18861	134	17868	115312;115313;115314;115315;115316;115317;115318;115319;115320;115321;115322	155995;155996;155997;155998;155999;156000;156001;156002;156003;156004;156005;156006;156007;156008	156005			14	
GGTPSAFDR	0	Unmodified	906.41954	0.41954463	2176;897;1129	P17858;Q01813;P08237	PFKL;PFKP;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	5.32		1	2			2	3				3	2	3	20.102	14.483	2	4.8897E-05	12865	160511_QHF_FH_JSI10i_2	100.02	56.894			0.86269	0.9866	11.361	7	1	Median	NaN	NaN	NaN	0	0	Median	0.85117	1.0128	2.351	2	1	Median	1.0137	0.9705	2.3264	2	0	Median	0.79405	0.86261	18.006	3	0	Median	171490000	87434000	84054000	0	0	0	22574000	12587000	9986200	82973000	34656000	48317000	65941000	40190000	25751000	18862	1129;2176;897	17869	115323;115324;115325;115326;115327;115328;115329;115330	156009;156010;156011;156012;156013;156014;156015;156016;156017	156016			9	
GGTPYNNER	0	Unmodified	1006.4468	0.44682202	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.3687	6.7263	2	0.0028261	4331	160511_QHF_FH_JSI11i_1	62.546	33.385			1.1404	0.9369	NaN	1	1	Median	1.1404	0.9369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109000000	49452000	59547000	109000000	49452000	59547000	0	0	0	0	0	0	0	0	0	18863	1005	17870	115331;115332;115333;115334	156018;156019;156020;156021	156018			4	
GGTVADLDEQDEETVTAGGK	1	Unmodified	1990.8967	0.89672331	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	44.205	43.694	2	4.871E-44	39513	160511_QHF_FH_JSI11i_1	170.56	149.31			1.0484	1.0367	61.142	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6209	1.5974	NaN	1	1	Median	0.67813	0.67283	NaN	1	1	Median	43436000	21484000	21952000	0	0	0	0	0	0	27701000	10358000	17343000	15735000	11126000	4609700	18864	3907	17871	115335;115336;115337;115338	156022;156023;156024;156025	156023			4	
GGTVADLDEQDEETVTAGGKEDEDPAK	2	Unmodified	2775.2206	0.22063622	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	45.102	44.43	3	1.1283E-24	40147	160511_QHF_FH_JSI11i_1	119.33	105.22			0.96584	0.92481	16.393	3	2	Median	NaN	NaN	NaN	0	0	Median	0.62878	0.73703	NaN	1	1	Median	0.96584	0.92481	NaN	1	1	Median	0.99201	1.0133	NaN	1	0	Median	157610000	87203000	70408000	9268500	0	9268500	42525000	29512000	13014000	37683000	23615000	14067000	68135000	34077000	34059000	18865	3907	17872	115339;115340;115341;115342;115343	156026;156027;156028;156029;156030;156031	156027			6	
GGTVEYANEK	1	Unmodified	1066.4931	0.49310351	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5	5.66	2					1					1	2		13.021	10.439	2	0.00019434	8886	160511_QHF_FH_JSI10i_1	92.732	56.337			0.8713	0.93128	28.656	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.90565	1.0725	NaN	1	1	Median	0.71741	0.69925	20.556	2	2	Median	NaN	NaN	NaN	0	0	Median	117430000	55873000	61557000	0	0	0	61723000	29034000	32689000	55707000	26839000	28868000	0	0	0	18866	3832	17873	115344;115345;115346	156032;156033;156034	156034			3	
GGTVPADLEAAAASLPSSK	1	Unmodified	1740.8894	0.8893935	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	74.014	73.469	2;3	1.6928E-08	65327	160511_QHF_FH_JSI9i_1	111.12	95.226			0.81109	1.0174	30.549	7	3	Plateau	1.0354	0.8555	30.537	2	1	Median	1.5096	1.7163	NaN	1	1	Median	0.95843	0.92259	31.802	2	1	Median	0.92502	0.95526	8.9184	2	0	Median	190810000	95945000	94868000	52127000	26967000	25160000	22080000	7778800	14302000	62406000	31641000	30765000	54200000	29559000	24641000	18867	5720	17874	115347;115348;115349;115350;115351;115352;115353	156035;156036;156037;156038;156039;156040	156040			5	
GGTYDTYVGSGWLIK	1	Unmodified	1615.7882	0.7882229	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.76	4.56	4	12	6						3	4	8	8	5	79.523	77.68	2;3	2.2334E-159	39297	160513_QHF_FH_JSI11Kac_6	293.62	267.5			0.88014	0.99641	24.506	22	9	Median	1.0319	0.8751	19.025	4	0	Median	0.8395	1.0167	17.468	6	5	Median	1.0817	1.0435	37.099	7	4	Median	0.86036	0.96415	17.466	5	0	Median	1526200000	802790000	723420000	179960000	89779000	90178000	456670000	238830000	217850000	596780000	316740000	280040000	292800000	157450000	135350000	18868	3973	17875	115354;115355;115356;115357;115358;115359;115360;115361;115362;115363;115364;115365;115366;115367;115368;115369;115370;115371;115372;115373;115374;115375;115376;115377;115378	156041;156042;156043;156044;156045;156046;156047;156048;156049;156050;156051;156052;156053;156054;156055;156056;156057;156058;156059;156060;156061;156062;156063;156064;156065;156066;156067;156068;156069;156070;156071;156072;156073;156074;156075;156076;156077;156078;156079;156080;156081;156082	156056			42	
GGVADALLYR	0	Unmodified	1033.5556	0.55564418	1053	P14406	COX7A2	Cytochrome c oxidase subunit 7A2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.2		5	3				2	6		3	4	3	6	59.693	53.899	2	2.2071E-43	46337	160511_QHF_FH_JSI12i_2	198.54	146.86			1.047	1.0184	25.511	12	2	Median	1.1823	1.004	3.7567	2	0	Median	0.79617	0.94559	7.0332	4	0	Median	1.2783	1.213	14.714	2	0	Median	1.1796	1.2552	36.056	4	2	Median	1358000000	667650000	690310000	329440000	153890000	175550000	397330000	225200000	172130000	148290000	63284000	85011000	482900000	225280000	257620000	18869	1053	17876	115379;115380;115381;115382;115383;115384;115385;115386;115387;115388;115389;115390;115391;115392;115393;115394	156083;156084;156085;156086;156087;156088;156089;156090;156091;156092;156093;156094;156095;156096;156097;156098;156099;156100;156101;156102;156103;156104	156085			22	
GGVAGGSILK	1	Unmodified	857.49707	0.49706667	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.78	1	5	4			1	3	2		4	4	3	5	29.772	24.98	2	9.7093E-09	23194	160511_QHF_FH_JSI9i_2	122.52	57.264			0.78586	0.90553	23.524	15	2	Median	1.2995	0.99162	20.151	3	2	Median	0.74759	0.88088	13.395	4	0	Median	0.81567	0.76572	15.602	3	0	Plateau	0.75654	0.83553	37.779	5	0	Median	2934100000	1575800000	1358200000	565000000	284640000	280360000	562570000	318740000	243830000	920950000	497870000	423080000	885560000	474590000	410970000	18870	1508	17877	115395;115396;115397;115398;115399;115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410	156105;156106;156107;156108;156109;156110;156111;156112;156113;156114;156115;156116;156117;156118	156112			14	
GGVAGGSILKGVLK	2	Acetyl (K)	1296.7765	0.776536	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	1	0	0	1			By MS/MS		15	0								1				1		80.814	70.247	2	0.0030254	37273	160513_QHF_FH_JSI11Kac_5	68.355	53.205			0.18782	0.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18782	0.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1351700	985930	365810	0	0	0	0	0	0	1351700	985930	365810	0	0	0	18871	1508	17878	115411	156119	156119	1535		1	
GGVDHAAAFGR	0	Unmodified	1056.5101	0.51009098	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.3		7	8						1	4	5	4	3	15.843	14.688	2;3	1.5542E-29	11602	160511_QHF_FH_JSI12i_3	197.81	157.86			1.05	1.0376	19.426	13	3	Median	1.4686	1.2463	30.655	3	0	Median	0.85947	1.0376	5.2117	3	2	Median	1.0957	1.0755	6.853	4	1	Median	0.89954	0.93153	5.6348	3	0	Median	1924600000	955080000	969500000	246220000	104380000	141850000	232410000	121440000	110980000	733820000	357610000	376210000	712130000	371660000	340470000	18872	4850	17879	115412;115413;115414;115415;115416;115417;115418;115419;115420;115421;115422;115423;115424;115425;115426;115427	156120;156121;156122;156123;156124;156125;156126;156127;156128;156129;156130;156131;156132;156133;156134;156135;156136;156137;156138;156139;156140;156141;156142	156141			23	
GGVDTAAAPAGGAPPAHAPGPGR	0	Unmodified	1950.966	0.96602112	2553	Q14657	LAGE3	EKC/KEOPS complex subunit LAGE3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.34		4	1				2			1	1	4	1	31.229	28.843	3	3.0209E-09	24452	160511_QHF_FH_JSI11i_2	54.668	50.229			1.026	0.94897	10.116	5	1	Linear	1.1415	1.0234	NaN	1	0	Median	0.87964	1.0856	NaN	1	0	Median	0.9406	0.87752	5.4835	3	1	Plateau	NaN	NaN	NaN	0	0	Median	160330000	80742000	79586000	46717000	25588000	21130000	31061000	18169000	12892000	82550000	36985000	45565000	0	0	0	18873	2553	17880	115428;115429;115430;115431;115432;115433;115434	156143;156144;156145;156146;156147;156148;156149;156150;156151	156149			8	
GGVDVTLPR	0	Unmodified	912.50288	0.50288033	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.41	5					1	4			2	4	2	2	45.077	40.662	2	3.1361E-06	36594	160511_QHF_FH_JSI10i_1	123.98	50.367			0.93534	0.8908	11.162	8	2	Median	1.0256	0.85392	10.111	2	1	Median	0.70949	0.82427	5.0471	2	1	Median	1.0505	1.032	7.5661	2	0	Median	0.8687	0.92533	9.5113	2	0	Median	925020000	467790000	457230000	287020000	131220000	155800000	198810000	116190000	82617000	238100000	115260000	122830000	201100000	105120000	95981000	18874	2286	17881	115435;115436;115437;115438;115439;115440;115441;115442;115443;115444	156152;156153;156154;156155;156156;156157;156158;156159;156160;156161;156162	156156			11	
GGVEPAGPGGGSPEPYHPTLGIYAR	0	Unmodified	2435.187	0.18697251	3193	Q6ZUX7	LHFPL2	Lipoma HMGIC fusion partner-like 2 protein	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		59.984	59.731	3	8.4135E-06	52970	160511_QHF_FH_JSI11i_3	59.324	44.196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18875	3193	17882	115445;115446	156163;156164	156163			2	
GGVFVCLWK	1	Unmodified	1064.5477	0.54772204	3179	Q6ZN18	AEBP2	Zinc finger protein AEBP2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.831	76.433	2	0.0018642	64122	160511_QHF_FH_JSI10i_3	68.915	54.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18876	3179	17883	115447	156165	156165			1	
GGVHLTK	1	Unmodified	710.40752	0.40752338	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	7.1375	7.1863	2	0.026198	4629	160511_QHF_FH_JSI12i_3	54.205	33.65			0.88508	0.86554	4.6282	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96389	0.89434	NaN	1	0	Median	0.81272	0.83768	NaN	1	0	Median	284930000	141830000	143100000	0	0	0	0	0	0	78342000	36124000	42217000	206590000	105700000	100890000	18877	4122	17884	115448;115449	156166	156166			1	
GGVILVSHDER	0	Unmodified	1180.62	0.62003536	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	1	2	1	3	28.042	22.314	2;3	5.9863E-07	12740	160513_QHF_FH_JSI10Kac_6	107.15	82.231			1.1128	1.0547	16.556	6	3	Median	1.1467	0.9701	NaN	1	0	Median	0.81178	0.96539	1.8658	2	0	Median	1.5782	1.4524	NaN	1	1	Median	1.1128	1.1714	4.1896	2	2	Median	326800000	149000000	177810000	7625200	3231400	4393700	24073000	13980000	10092000	154430000	62115000	92313000	140680000	69669000	71008000	18878	5014	17885	115450;115451;115452;115453;115454;115455;115456	156167;156168;156169;156170;156171;156172;156173;156174	156173			8	
GGVIQSVSSWK	1	Unmodified	1146.6033	0.60332266	3976	Q96B23	C18orf25	Uncharacterized protein C18orf25	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	50.323	50.205	2	7.6326E-13	42967	160511_QHF_FH_JSI12i_3	142.43	123.82			0.94171	0.92029	2.8136	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0018	0.93878	NaN	1	0	Median	0.8852	0.90216	NaN	1	0	Median	194580000	99065000	95510000	0	0	0	0	0	0	85278000	47417000	37861000	109300000	51649000	57649000	18879	3976	17886	115457;115458;115459;115460	156175;156176;156177;156178;156179;156180	156179			6	
GGVITDEEETSK	1	Unmodified	1263.583	0.58304073	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		18.525	18.336	2	4.1841E-05	15551	160511_QHF_FH_JSI11i_1	87.298	55.364			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18880	2257	17887	115461;115462;115463;115464	156181;156182;156183;156184	156181			4	
GGVPAHMFGVTK	1	Unmodified	1199.6121	0.61211321	743	O95905	ECD	Protein SGT1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	40.011	39.005	2;3	4.7417E-05	32946	160511_QHF_FH_JSI12i_3	81.431	66.044			0.81074	0.83027	15.362	3	1	Plateau	1.3153	1.0395	NaN	1	0	Median	0.7815	0.90144	NaN	1	0	Median	0.81074	0.76472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	231010000	122360000	108650000	30487000	15342000	15145000	68003000	37252000	30752000	132520000	69769000	62750000	0	0	0	18881	743	17888	115465;115466;115467;115468;115469;115470	156185;156186;156187;156188;156189	156189			5	
GGVPLVK	1	Unmodified	668.42211	0.42211082	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.34	4	3	2				3			3	2	3	4	27.683	24.858	2	0.0091535	21552	160511_QHF_FH_JSI11i_1	80.377	43.79			0.93972	0.98674	17.377	12	0	Median	1.2709	1.0603	9.7229	3	0	Median	0.83851	0.99439	7.0394	2	0	Median	0.9381	0.94178	2.8673	3	0	Plateau	1.0042	1.0337	29.232	4	0	Median	1243800000	576250000	667500000	322850000	123920000	198930000	225810000	108380000	117430000	422010000	212010000	210010000	273070000	131940000	141140000	18882	40	17889	115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482	156190;156191;156192;156193;156194;156195;156196;156197;156198;156199;156200;156201;156202;156203;156204;156205;156206;156207	156190			18	
GGVQELLR	0	Unmodified	870.49232	0.49231565	4544	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.089	72.514	2	0.056686	66104	160511_QHF_FH_JSI12i_1	44.692	13.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10435000	10435000	0	0	0	0	0	0	0	0	0	0	10435000	10435000	0	18883	4544	17890	115483	156208	156208			1	
GGVQVLLQQWIEYIK	1	Unmodified	1772.9825	0.98250603	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.046	90.549	2;3	1.0235E-32	51035	160513_QHF_FH_JSI9Kac_6	208.74	176.25			0.87604	0.87059	22.299	4	2	Median	1.0648	0.91028	NaN	1	0	Median	0.86107	1.0051	26.617	2	1	Median	0.72674	0.71367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	356180000	209200000	146980000	100380000	41851000	58525000	212680000	141550000	71132000	43122000	25802000	17320000	0	0	0	18884	2457	17891	115484;115485;115486;115487	156209;156210;156211;156212;156213	156210			5	
GGVQVPAVDISSSLGGR	0	Unmodified	1597.8424	0.84238373	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	70.801	70.258	2;3	4.0898E-06	63550	160511_QHF_FH_JSI10i_1	112.51	92.203			1.233	1.2575	49.557	5	2	Median	1.5698	1.3129	NaN	1	0	Median	0.88681	1.0573	NaN	1	0	Median	0.61934	0.60271	NaN	1	1	Median	1.7209	1.7381	45.776	2	1	Median	540630000	286050000	254580000	78495000	28996000	49499000	132210000	54967000	77242000	219510000	158680000	60834000	110420000	43410000	67006000	18885	2286	17892	115488;115489;115490;115491;115492	156214;156215;156216;156217;156218;156219;156220	156219			7	
GGVSAVAGGVTAVGSAVVNK	1	Unmodified	1698.9264	0.92644771	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.784	9	6	4							3	5	6	5	66.919	66.354	2;3	3.3748E-18	57430	160511_QHF_FH_JSI12i_3	198.23	183.78			0.80367	0.76789	22.656	19	9	Median	1.1132	0.95231	20.775	3	3	Median	0.59605	0.70812	20.34	5	3	Median	0.81426	0.79852	10.398	6	1	Median	0.69915	0.75191	23.722	5	2	Median	1337000000	750960000	586070000	162100000	60474000	101620000	441440000	277860000	163580000	413110000	233850000	179260000	320390000	178780000	141610000	18886	3763	17893	115493;115494;115495;115496;115497;115498;115499;115500;115501;115502;115503;115504;115505;115506;115507;115508;115509;115510;115511	156221;156222;156223;156224;156225;156226;156227;156228;156229;156230;156231;156232;156233;156234;156235;156236;156237;156238;156239;156240;156241	156241			19	
GGVSGFGVPPASMR	0	Unmodified	1317.65	0.64995528	4447	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	54.188	53.414	2	0.00018843	46134	160511_QHF_FH_JSI11i_2	108.35	82.41			1.0092	0.96105	17.863	2	2	Median	1.2302	1.0904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82785	0.84701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36886000	20132000	16754000	15973000	7031900	8941500	0	0	0	20912000	13100000	7812600	0	0	0	18887	4447	17894	115512;115513;115514;115515;115516	156242;156243;156244;156245;156246;156247	156246			6	
GGVSVAGHSLGSLILFDILSNQK	1	Unmodified	2311.2536	0.25359551	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	1	2		97.166	91.133	3	2.4328E-60	49176	160513_QHF_FH_JSI9Kac_6	191.78	169.34			1.1903	1.0549	28.79	4	2	Median	1.0379	0.87083	NaN	1	0	Median	0.61915	0.72281	NaN	1	0	Median	1.3711	1.2833	0.59195	2	2	Median	NaN	NaN	NaN	0	0	Median	675660000	317580000	358080000	172890000	83635000	89255000	175030000	111600000	63426000	327740000	122340000	205400000	0	0	0	18888	5755	17895	115517;115518;115519;115520	156248;156249;156250;156251;156252;156253	156251			6	
GGVSYRPAEVAETGA	0	Unmodified	1462.7052	0.70522155	2766	Q16790	CA9	Carbonic anhydrase 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		37.317	36.578	2	0.0011732	31199	160511_QHF_FH_JSI11i_2	91.961	84.564			0.88698	0.8286	0.42863	2	0	Median	0.9572	0.83112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82191	0.82609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55621000	29865000	25756000	14942000	8431800	6510500	0	0	0	40678000	21433000	19246000	0	0	0	18889	2766	17896	115521;115522;115523	156254;156255;156256;156257;156258	156256			5	
GGVTEISAADK	1	Unmodified	1046.5244	0.52440364	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	24.454	21.364	2	1.6914E-09	18466	160511_QHF_FH_JSI10i_1	133.23	96.832			0.76634	0.83536	16.013	6	4	Median	1.0253	0.84702	NaN	1	1	Median	0.76634	0.89045	10.992	2	1	Median	0.87063	0.86477	NaN	1	0	Median	0.60806	0.65185	2.3879	2	2	Median	579300000	326490000	252810000	158210000	88419000	69787000	162550000	99041000	63510000	134080000	69563000	64517000	124460000	69470000	54994000	18890	4930	17897	115524;115525;115526;115527;115528;115529	156259;156260;156261;156262;156263;156264;156265	156261			7	
GGVTGSPEASISGSK	1	Unmodified	1332.6521	0.65212334	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.74	5				3	3				2	4	2	3	28.377	23.777	2	8.6872E-30	20312	160511_QHF_FH_JSI9i_1	189.24	163.62			0.83178	0.9349	26.508	10	5	Median	1.2747	1.0486	59.985	2	1	Median	0.7755	0.92133	25.841	4	3	Median	1.0674	1.0268	NaN	1	0	Median	0.81738	0.85723	17.553	3	1	Plateau	933940000	475970000	457970000	328100000	165630000	162470000	361650000	185310000	176350000	7129100	2926100	4202900	237060000	122100000	114960000	18891	2286	17898	115530;115531;115532;115533;115534;115535;115536;115537;115538;115539;115540	156266;156267;156268;156269;156270;156271;156272;156273;156274;156275;156276;156277;156278;156279;156280	156273			15	
GGVTTQALAK	1	Unmodified	944.5291	0.52909508	865	P07199	CENPB	Major centromere autoantigen B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	19.037	18.737	2	0.0048481	16277	160511_QHF_FH_JSI12i_1	54.722	31.2			1.2177	1.1958	30.322	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5453	1.4818	NaN	1	0	Median	0.95964	0.96505	NaN	1	0	Median	61228000	28653000	32575000	0	0	0	0	0	0	33116000	14701000	18415000	28112000	13952000	14160000	18892	865	17899	115541;115542	156281;156282	156282			1	
GGVVAGNVAHILDSNHGK	1	Unmodified	1743.9016	0.90162994	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		46.369	46.369	3	1.3751E-11	39208	160511_QHF_FH_JSI10i_3	111.33	98.493			1.2048	1.1132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2048	1.1132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49173000	23426000	25747000	0	0	0	0	0	0	49173000	23426000	25747000	0	0	0	18893	3117	17900	115543;115544	156283;156284;156285	156285			3	
GGVVGIK	1	Unmodified	628.39081	0.39081069	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.47	4	4	2			2	3	4	3	5	6	5	6	19.657	14.881	2	0.002611	13086	160511_QHF_FH_JSI10i_1	109.88	73.294			0.89035	0.94381	24.794	22	0	Median	1.3699	1.153	35.083	5	0	Median	0.79217	0.94952	32.597	6	0	Median	1.0326	1.0589	8.3586	5	0	Median	0.76316	0.8249	11.314	6	0	Median	27779000000	13757000000	14022000000	5881600000	2394400000	3487200000	7803800000	4157500000	3646300000	7596300000	3621200000	3975100000	6497300000	3583700000	2913600000	18894	803	17901	115545;115546;115547;115548;115549;115550;115551;115552;115553;115554;115555;115556;115557;115558;115559;115560;115561;115562;115563;115564;115565;115566	156286;156287;156288;156289;156290;156291;156292;156293;156294;156295;156296;156297;156298;156299;156300;156301;156302;156303;156304;156305;156306;156307;156308;156309;156310;156311;156312;156313;156314;156315;156316;156317;156318;156319;156320;156321;156322;156323;156324;156325;156326	156297			41	
GGVVGIKVDK	2	Acetyl (K)	1012.5917	0.59169534	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	48.995	39.181	2	0.00031527	21143	160513_QHF_FH_JSI10Kac_3	94.309	66.296			0.7334	0.84793	113.76	6	1	Median	NaN	NaN	NaN	0	0	Median	0.7334	0.87427	11.703	2	0	Median	0.5065	0.49313	10.13	2	0	Median	2.771	3.0358	172.99	2	1	Median	118380000	68792000	49593000	0	0	0	40531000	21580000	18951000	48383000	34082000	14301000	29471000	13130000	16341000	18895	803	17902	115567;115568;115569;115570;115571;115572	156327;156328;156329;156330;156331	156331	431		5	
GGVVGIKVDK	2	Unmodified	970.58113	0.58113065	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	25.347	24.462	2;3	0.0051797	20207	160511_QHF_FH_JSI12i_3	45.433	18.76			0.83583	0.91532	3.3722	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81556	0.9374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8566	0.89375	NaN	1	0	Median	108400000	65595000	42807000	9742000	9742000	0	23927000	15166000	8761300	0	0	0	74733000	40687000	34046000	18896	803	17902	115573;115574;115575;115576	156332;156333;156334	156333			3	
GGVVGTLR	0	Unmodified	757.44464	0.44463717	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	18.43	18.456	2	0.010797	14957	160511_QHF_FH_JSI12i_3	54.774	24.967			0.80962	0.80202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80962	0.80202	NaN	1	0	Median	43120000	22689000	20431000	0	0	0	0	0	0	0	0	0	43120000	22689000	20431000	18897	4428	17903	115577	156335	156335			1	
GGVVLKEDALPGQK	2	Acetyl (K)	1451.7984	0.79839365	1441	P35613	BSG	Basigin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		65.994	56.387	2	0.0010402	29128	160513_QHF_FH_JSI11Kac_3	93.258	76.232			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	874390	874390	0	0	0	0	0	0	0	874390	874390	0	0	0	0	18898	1441	17904	115578	156336	156336	1422		1	
GGVVNAAK	1	Unmodified	714.40244	0.40243801	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.1282	6.776	2	0.0033378	4732	160511_QHF_FH_JSI12i_1	79.146	47.081			0.84967	0.89271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84967	0.89271	NaN	1	1	Median	138240000	77425000	60815000	0	0	0	0	0	0	0	0	0	138240000	77425000	60815000	18899	238	17905	115579	156337	156337			1	
GGVVTSNPLGF	0	Unmodified	1046.5397	0.53965977	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	76.88	73.786	2	2.2752E-05	68055	160511_QHF_FH_JSI11i_1	101.64	87.925			0.96762	0.98643	9.9881	6	0	Median	1.3	1.0801	NaN	1	0	Median	0.7539	0.87754	NaN	1	0	Median	1.0665	1.0372	1.5466	2	0	Median	0.84791	0.89589	8.0639	2	0	Median	589670000	304830000	284830000	162270000	69176000	93092000	138410000	83172000	55237000	147410000	73751000	73663000	141570000	78734000	62841000	18900	1675	17906	115580;115581;115582;115583;115584;115585	156338;156339;156340;156341;156342;156343;156344;156345	156339			8	
GGVYLHTSAK	1	Unmodified	1031.54	0.53999412	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		19.829	12.518	2;3	0.014949	7529	160513_QHF_FH_JSI9Kac_6	24.232	18.197			1.3335	1.1374	NaN	1	0	Median	1.3335	1.1374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4139500	2333800	1805600	4139500	2333800	1805600	0	0	0	0	0	0	0	0	0	18901	4818	17907	115586;115587	156346;156347	156347			2	
GGWGISPR	0	Unmodified	828.42424	0.42423608	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			2						2	1	2		1	30.41	25.587	2	9.1874E-05	25278	160511_QHF_FH_JSI9i_3	130.77	93.12			1.4318	1.2893	54.446	4	1	Linear	1.2388	0.98898	NaN	1	0	Median	0.52635	0.62082	57.87	2	1	Median	NaN	NaN	NaN	0	0	Median	0.3268	0.34619	NaN	1	0	Median	355540000	191830000	163710000	160130000	75042000	85091000	164140000	92347000	71796000	0	0	0	31260000	24439000	6821200	18902	2014;2065	17908	115588;115589;115590;115591	156348;156349;156350;156351	156350			4	
GGWVYVLHPTPELWTLNLPHR	0	Unmodified	2484.3066	0.30663413	4078	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	1	3	2	89.712	80.952	3;4	1.1127E-59	45140	160513_QHF_FH_JSI11Kac_6	190.24	178.62			1.0293	1.0295	8.759	7	0	Median	1.3252	1.1104	NaN	1	0	Median	0.86641	1.0295	NaN	1	0	Median	1.1797	1.1066	7.3869	3	0	Plateau	0.88238	0.91823	6.3908	2	0	Median	4846200000	2392500000	2453800000	939270000	426860000	512410000	1571100000	851220000	719880000	1648900000	764880000	884060000	686900000	349490000	337410000	18903	4078	17909	115592;115593;115594;115595;115596;115597;115598	156352;156353;156354;156355;156356;156357;156358	156352			7	
GGYAGSSQAPNK	1	Unmodified	1135.5258	0.52580062	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	9.0077	6.0257	2	4.5672E-54	5801	160511_QHF_FH_JSI12i_1	224.51	161.09			1.0735	1.0629	53.105	8	3	Median	1.6393	1.3618	40.142	2	2	Median	1.8019	2.0619	88.621	2	1	Median	1.0735	1.0391	13.301	2	0	Median	0.76723	0.79353	11.992	2	0	Median	495970000	241670000	254300000	175530000	78258000	97276000	97442000	50827000	46615000	136480000	68537000	67941000	86515000	44050000	42465000	18904	2950	17910	115599;115600;115601;115602;115603;115604;115605;115606	156359;156360;156361;156362;156363;156364;156365;156366;156367;156368;156369	156362			11	
GGYDGYRPSFSNTPNSGYTQSQFSAPR	0	Unmodified	2940.3063	0.30631237	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.923	57.389	3	1.3577E-12	47115	160511_QHF_FH_JSI9i_3	87.339	82.579			1.6182	1.3517	NaN	1	1	Median	1.6182	1.3517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14095000	3261900	10833000	14095000	3261900	10833000	0	0	0	0	0	0	0	0	0	18905	2536	17911	115607	156370	156370			1	
GGYFDEFGIIR	0	Unmodified	1272.6139	0.61388734	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.94	3	4	3						3	3	3	2	5	82.661	80.256	2	6.2731E-60	70998	160511_QHF_FH_JSI12i_2	237.08	214.01			0.88364	0.97163	32.108	12	4	Median	1.2975	1.1054	6.4961	3	1	Median	0.75126	0.92573	22.45	3	0	Median	0.98329	0.98371	0.86638	2	0	Median	0.753	0.79815	55.266	4	3	Median	2720300000	1416200000	1304100000	509820000	216200000	293620000	625640000	366050000	259590000	784640000	418040000	366600000	800220000	415910000	384310000	18906	1000	17912	115608;115609;115610;115611;115612;115613;115614;115615;115616;115617;115618;115619;115620	156371;156372;156373;156374;156375;156376;156377;156378;156379;156380;156381;156382;156383;156384;156385;156386;156387;156388;156389;156390;156391;156392;156393;156394	156374			23	
GGYFDEFGIIRDVMQNHLLQMLCLVAMEK	1	Unmodified	3426.6597	0.65968039	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.14	95.42	4	2.8037E-71	56310	160513_QHF_FH_JSI10Kac_6	198.79	187.89			1.3311	1.5699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3311	1.5699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	359530000	164640000	194890000	0	0	0	359530000	164640000	194890000	0	0	0	0	0	0	18907	1000	17913	115621	156395	156395			1	
GGYFPENVK	1	Unmodified	1009.4869	0.48689592	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	36.974	36.375	2	0.0010135	32527	160511_QHF_FH_JSI11i_1	75.213	34.944			1.3916	1.4218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3916	1.4218	NaN	1	1	Median	65800000	28213000	37587000	0	0	0	0	0	0	0	0	0	65800000	28213000	37587000	18908	2344	17914	115622;115623	156396;156397	156396			2	
GGYGGGMPANVQMQLVDTK	1	Unmodified	1921.9026	0.9026175	4962	Q9NRR3	CDC42SE2	CDC42 small effector protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.249	66.73	2	6.3532E-16	60748	160511_QHF_FH_JSI12i_1	172.09	156.55			1.4136	1.3952	16.797	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6483	1.5712	NaN	1	1	Median	1.2123	1.239	NaN	1	1	Median	61532000	25443000	36089000	0	0	0	0	0	0	30041000	11626000	18415000	31490000	13816000	17674000	18909	4962	17915	115624;115625;115626;115627	156398;156399;156400;156401;156402	156400			5	
GGYGKLAQNQ	1	Acetyl (K)	1076.5251	0.52507234	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	11	0				2							1		1	36.772	28.045	2	0.040355	11912	160513_QHF_FH_JSI10Kac_1	51.854	42.64			0.29937	0.33235	81.14	2	1	Median	NaN	NaN	NaN	0	0	Median	0.16023	0.18725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55935	0.58989	NaN	1	0	Median	2357000	1624200	732780	0	0	0	757980	717620	40361	0	0	0	1599000	906600	692420	18910	1768	17916	115628;115629	156403;156404	156404			2	
GGYHLVK	1	Unmodified	772.42317	0.42317345	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	12.111	11.743	2	0.005487	8568	160511_QHF_FH_JSI12i_3	94.669	71.632			0.92669	0.91828	16.564	4	0	Median	0.94742	0.76021	NaN	1	0	Median	0.77034	0.89906	NaN	1	0	Median	1.1942	1.1377	NaN	1	0	Median	0.90641	0.93791	NaN	1	0	Median	1284900000	606920000	677950000	220370000	90697000	129670000	234340000	120680000	113660000	320000000	141840000	178160000	510160000	253700000	256460000	18911	4242	17917	115630;115631;115632;115633	156405;156406;156407	156407			3	
GGYIGSTYFER	0	Unmodified	1248.5775	0.57750184	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.22			4					2	4	3	3	2	2	55.12	48.926	2	9.1764E-31	41024	160511_QHF_FH_JSI10i_3	196.88	177.79			0.97448	1.0163	13.122	10	0	Median	1.3331	1.1302	13.046	3	0	Median	0.96229	1.0938	1.8238	3	0	Plateau	0.99815	0.95573	1.6211	2	0	Median	0.79325	0.83339	2.2472	2	0	Median	1957300000	1013800000	943500000	120680000	50097000	70585000	212870000	111770000	101100000	876100000	429580000	446530000	747620000	422330000	325280000	18912	1935	17918	115634;115635;115636;115637;115638;115639;115640;115641;115642;115643	156408;156409;156410;156411;156412;156413;156414;156415;156416;156417;156418;156419;156420;156421;156422;156423;156424;156425;156426	156411			18	
GGYTSGTFR	0	Unmodified	944.43519	0.4351947	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	8.5	6.5		1						1		1			1	24.433	14.998	2	0.022362	13881	160511_QHF_FH_JSI12i_2	43.734	25.05			1.5128	1.2502	NaN	1	0	Median	1.5128	1.2502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2090000	773120	1316900	2090000	773120	1316900	0	0	0	0	0	0	0	0	0	18913	1254	17919	115644;115645	156427;156428	156427			2	
GGYVLHIGTIYGDLK	1	Unmodified	1604.8562	0.85624288	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	6.04		10	11						8	7	8	6	8	76.229	73.249	2;3	2.4591E-62	36467	160513_QHF_FH_JSI12Kac_6	205.56	160.2			1.0895	1.0776	29.945	28	12	Median	1.39	1.1542	19.864	6	2	Median	0.97214	1.1448	38.034	8	4	Median	1.3061	1.241	6.3804	6	3	Median	0.91097	0.94442	25.865	8	3	Median	12722000000	6100900000	6621200000	2195200000	1109500000	1085700000	6688300000	3226300000	3462000000	1977500000	860180000	1117300000	1861100000	904930000	956160000	18914	1664	17920	115646;115647;115648;115649;115650;115651;115652;115653;115654;115655;115656;115657;115658;115659;115660;115661;115662;115663;115664;115665;115666;115667;115668;115669;115670;115671;115672;115673;115674	156429;156430;156431;156432;156433;156434;156435;156436;156437;156438;156439;156440;156441;156442;156443;156444;156445;156446;156447;156448;156449;156450;156451;156452;156453;156454;156455;156456;156457;156458;156459;156460;156461;156462;156463;156464;156465;156466;156467;156468;156469;156470;156471;156472;156473;156474;156475;156476;156477;156478;156479;156480;156481	156478			53	
GGYYYYHNLETQEGGWDEPPNFVQNSMQLSR	0	Unmodified	3678.611	0.61101017	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	82.91	75.392	3	4.9983E-67	42413	160513_QHF_FH_JSI10Kac_6	184.75	174.69			1.0284	1.1507	3.76	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0223	1.1818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.1206	NaN	1	0	Median	206530000	133980000	72541000	0	0	0	179180000	118790000	60388000	0	0	0	27343000	15189000	12153000	18915	1600	17921	115675;115676	156482;156483	156483			2	
GGYYYYHNLETQEGGWDEPPNFVQNSMQLSR	0	Oxidation (M)	3694.6059	0.60592479	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	79.938	70.496	3	1.3365E-10	37313	160513_QHF_FH_JSI12Kac_6	98.151	89.676			0.84258	0.91665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84258	0.91665	NaN	1	1	Median	12252000	9187700	3064600	0	0	0	0	0	0	0	0	0	12252000	9187700	3064600	18916	1600	17921	115677	156484	156484		1273	1	
GHAAFTSDPKPTIEVSGK	2	Unmodified	1840.9319	0.93192702	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.65	0.478		6	11							4	4	6	3	35.699	35.12	2;3;4	1.0393E-05	29863	160511_QHF_FH_JSI12i_3	88.385	82.714			0.9301	0.96289	10.937	14	2	Median	1.1392	0.97225	5.2126	2	0	Median	0.96424	1.1031	8.2534	4	0	Linear	0.95703	0.89885	10.608	5	1	Median	0.80907	0.79605	13.933	3	1	Median	2268500000	1123800000	1144800000	173840000	82201000	91644000	563810000	284100000	279710000	928270000	457640000	470620000	602590000	299810000	302780000	18917	765	17922	115678;115679;115680;115681;115682;115683;115684;115685;115686;115687;115688;115689;115690;115691;115692;115693;115694	156485;156486;156487;156488;156489;156490;156491;156492;156493;156494;156495;156496;156497;156498;156499;156500;156501;156502;156503;156504;156505;156506;156507;156508;156509;156510;156511;156512;156513;156514	156511			30	
GHAAPILYAVWAEAGFLAEAELLNLRK	1	Unmodified	2922.5756	0.57559835	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	6	2	3	100.94	93.159	3;4;5	3.6164E-135	55141	160513_QHF_FH_JSI10Kac_6	254.68	242.72			0.85744	0.91111	30.573	13	2	Median	1.0573	0.90107	7.2986	3	0	Plateau	0.81861	0.93926	42.003	6	2	Median	1.0319	0.98566	0.44865	2	0	Median	0.75458	0.78954	7.5577	2	0	Median	10207000000	5324600000	4882400000	3363600000	1550900000	1812700000	5481200000	3031400000	2449800000	432970000	221250000	211720000	929260000	521000000	408260000	18918	1322	17923	115695;115696;115697;115698;115699;115700;115701;115702;115703;115704;115705;115706;115707;115708	156515;156516;156517;156518;156519;156520;156521;156522;156523;156524;156525;156526;156527;156528;156529;156530;156531;156532;156533;156534;156535	156531			19	
GHADSVTGLSLSSEGSYLLSNAMDNTVR	0	Unmodified	2880.356	0.35596468	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	96.925	96.77	3	1.1359E-27	86211	160511_QHF_FH_JSI11i_3	147.26	133.36			1.1126	1.0911	10.821	8	5	Median	1.3333	1.1233	NaN	1	1	Median	0.7078	0.86192	NaN	1	0	Median	1.2519	1.1254	4.4889	4	4	Linear	0.94246	1.0101	9.0066	2	0	Median	472910000	215420000	257490000	67380000	19381000	47999000	43561000	23310000	20250000	154340000	70704000	83635000	207630000	102030000	105600000	18919	4029	17924	115709;115710;115711;115712;115713;115714;115715;115716	156536;156537;156538;156539;156540;156541;156542;156543;156544;156545;156546;156547;156548;156549	156537			14	
GHADSVTGLSLSSEGSYLLSNAMDNTVR	0	Oxidation (M)	2896.3509	0.35087931	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	81.261	81.035	3	3.656E-15	70395	160511_QHF_FH_JSI12i_3	88.573	80.393			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18920	4029	17924	115717	156550	156550		2378	1	
GHAGSVDSIAVDGSGTK	1	Unmodified	1556.7431	0.74306362	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								2		1	2	23.113	22.271	2;3	4.9127E-07	18545	160511_QHF_FH_JSI12i_2	91.858	85.325			0.96757	0.96646	17.341	3	0	Median	1.4255	1.2201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96757	0.96646	NaN	1	0	Median	0.7729	0.86931	NaN	1	0	Median	147920000	69153000	78770000	37486000	13920000	23565000	0	0	0	61015000	27388000	33628000	49422000	27845000	21578000	18921	4592	17925	115718;115719;115720;115721;115722	156551;156552;156553;156554	156551			4	
GHALLILRPEELGFLR	0	Unmodified	1833.0625	0.062487683	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	83.509	75.267	4	3.2701E-17	42359	160513_QHF_FH_JSI10Kac_6	143.93	125.1			0.89224	0.91581	10.179	4	0	Median	0.97214	0.85114	NaN	1	0	Median	0.81342	0.96343	NaN	1	0	Median	1.1152	1.0622	NaN	1	0	Median	0.81891	0.87054	NaN	1	0	Median	536950000	268880000	268070000	77430000	34028000	43402000	339880000	175260000	164620000	65221000	33455000	31766000	54417000	26143000	28274000	18922	5042	17926	115723;115724;115725;115726	156555;156556;156557	156557			3	
GHASAPYFGK	1	Unmodified	1033.4981	0.49812931	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	1	3	2	4	19.778	17.645	2;3	8.866E-09	13907	160511_QHF_FH_JSI12i_3	127.02	112.35			1.2475	1.1856	22.402	9	3	Median	1.3776	1.1856	NaN	1	0	Median	0.80451	0.9075	16.571	3	2	Median	1.1934	1.1311	8.08	2	1	Median	1.3787	1.414	17.489	3	0	Median	990900000	386240000	604660000	4022100	2108000	1914100	165560000	85596000	79965000	270320000	113810000	156520000	550990000	184730000	366260000	18923	3500	17927	115727;115728;115729;115730;115731;115732;115733;115734;115735;115736	156558;156559;156560;156561;156562;156563;156564;156565;156566;156567;156568;156569;156570;156571	156570			14	
GHASAPYFGKEEPSVAPSSTGK	2	Acetyl (K)	2245.0651	0.065126037	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	57.569	46.81	3	0.00024527	25680	160513_QHF_FH_JSI11Kac_5	61.181	52.18			0.5104	0.53562	14.271	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48234	0.48421	NaN	1	0	Median	0.54009	0.5925	NaN	1	0	Median	11506000	7497600	4008000	0	0	0	0	0	0	8336200	5465100	2871100	3169400	2032600	1136900	18924	3500	17928	115737;115738	156572;156573;156574	156573	2872		3	
GHAVGDIPGVR	0	Unmodified	1076.5727	0.57269123	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	6.01		18	12					4	8	13	12	8	9	27.747	24.57	2;3	2.6592E-18	20471	160511_QHF_FH_JSI11i_2	164.57	146.53			0.95775	0.97313	16.164	35	3	Median	1.1753	1.0116	18.574	10	0	Median	0.92055	1.0343	18.287	11	2	Median	0.98647	0.96023	6.3107	7	0	Median	0.91275	0.96888	8.0562	7	1	Median	17006000000	8393600000	8612700000	3068900000	1461500000	1607400000	3863700000	1989800000	1874000000	5147300000	2578000000	2569300000	4926400000	2364300000	2562100000	18925	1992	17929	115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752;115753;115754;115755;115756;115757;115758;115759;115760;115761;115762;115763;115764;115765;115766;115767;115768;115769;115770;115771;115772;115773;115774;115775;115776;115777;115778;115779;115780	156575;156576;156577;156578;156579;156580;156581;156582;156583;156584;156585;156586;156587;156588;156589;156590;156591;156592;156593;156594;156595;156596;156597;156598;156599;156600;156601;156602;156603;156604;156605;156606;156607;156608;156609;156610;156611;156612;156613;156614;156615;156616;156617;156618;156619;156620;156621;156622;156623;156624;156625;156626	156606			48	
GHAVNLLDVPVPVAR	0	Unmodified	1555.8835	0.88346068	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	72.846	72.118	2;3	1.4487E-09	62221	160511_QHF_FH_JSI12i_3	141.73	115.79			1.0774	1.0291	14.328	9	2	Median	1.4663	1.2361	29.187	2	1	Median	0.89851	1.0869	10.972	3	1	Median	1.0927	1.0089	2.8099	2	0	Median	1.0975	1.1012	10.918	2	0	Median	1155900000	573110000	582740000	105230000	47521000	57709000	215620000	112170000	103450000	421970000	210320000	211650000	413030000	203100000	209930000	18926	133	17930	115781;115782;115783;115784;115785;115786;115787;115788;115789	156627;156628;156629;156630;156631;156632;156633;156634;156635;156636;156637;156638;156639;156640;156641;156642	156642			16	
GHAYSVTGAEEVESNGSLQK	1	Unmodified	2061.9603	0.96032661	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	36.778	36.184	2;3	5.7304E-68	30674	160511_QHF_FH_JSI12i_3	290.39	277.83			0.9548	0.91061	16.916	11	6	Median	1.0374	0.88773	12.365	2	2	Median	0.82189	1.0127	34.493	2	1	Median	0.95813	0.92797	20.343	4	2	Median	0.87175	0.96399	4.6367	3	1	Plateau	1427900000	742510000	685430000	249050000	115800000	133250000	280900000	150180000	130720000	454040000	231590000	222450000	443940000	244930000	199020000	18927	1122	17931	115790;115791;115792;115793;115794;115795;115796;115797;115798;115799;115800	156643;156644;156645;156646;156647;156648;156649;156650;156651;156652;156653;156654;156655;156656;156657;156658;156659;156660;156661;156662	156661			20	
GHAYSVTGAK	1	Unmodified	989.49304	0.49304393	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	4	4	2	3	8.9176	6.3631	2;3	4.8433E-05	5487	160511_QHF_FH_JSI11i_3	93.267	82.198			0.92987	0.99266	10.937	13	0	Median	1.2114	1.1426	11.742	4	0	Linear	0.86514	1.0172	2.0092	4	0	Median	0.96187	0.93793	1.6782	2	0	Median	0.83349	0.84991	19.834	3	0	Plateau	1549100000	788730000	760380000	145770000	66100000	79672000	294150000	167740000	126420000	298290000	130130000	168160000	810900000	424760000	386140000	18928	871	17932	115801;115802;115803;115804;115805;115806;115807;115808;115809;115810;115811;115812;115813	156663;156664;156665;156666;156667;156668;156669	156663			6	
GHAYSVTGAKQVNYR	1	Acetyl (K)	1691.838	0.83796706	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.237	31.665	3	0.00044928	17415	160513_QHF_FH_JSI11Kac_6	86.803	65.044			0.070699	0.072572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.070699	0.072572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2189700	2019800	169890	0	0	0	0	0	0	2189700	2019800	169890	0	0	0	18929	871	17933	115814	156670	156670	580		1	
GHCPPAPAKPMHPENK	2	Acetyl (K);Oxidation (M)	1824.84	0.83995767	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								14	14	12	5	6	5	22.988	14.47	3;4	2.1502E-08	8299	160513_QHF_FH_JSI12Kac_6	118.51	111.28			1.0279	0.90884	57.125	21	1	Median	1.0685	0.87672	85.507	8	1	Median	0.77999	0.91491	4.2313	4	0	Median	0.87329	0.82632	5.4881	4	0	Linear	1.2274	1.3153	13.903	5	0	Median	481300000	236210000	245090000	66199000	32534000	33666000	104220000	56585000	47636000	92363000	51019000	41344000	218520000	96075000	122450000	18930	3330	17934	115815;115816;115817;115818;115819;115820;115821;115822;115823;115824;115825;115826;115827;115828;115829;115830;115831;115832;115833;115834;115835;115836;115837;115838;115839;115840;115841;115842	156671;156672;156673;156674;156675;156676;156677;156678;156679;156680;156681;156682;156683;156684;156685;156686;156687;156688;156689;156690;156691;156692;156693;156694;156695;156696;156697;156698;156699;156700;156701;156702;156703;156704;156705;156706;156707;156708;156709;156710;156711;156712;156713;156714;156715;156716;156717;156718;156719	156707	2840;2841	2246	48	
GHCPPAPAKPMHPENK	2	Acetyl (K)	1808.845	0.84504304	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								10	10	5	7	3	5	28.446	19.629	3;4	2.0969E-07	11432	160513_QHF_FH_JSI11Kac_6	110.84	103.02			0.91369	0.92718	82.256	19	2	Median	1.0765	0.90946	4.2075	4	0	Median	0.75306	0.90694	119.51	7	2	Median	0.82952	0.7854	6.9233	3	0	Plateau	1.2737	1.3295	13.333	5	0	Median	1478600000	802770000	675840000	150300000	66889000	83415000	566860000	368900000	197950000	388950000	208960000	179990000	372510000	158020000	214490000	18931	3330	17934	115843;115844;115845;115846;115847;115848;115849;115850;115851;115852;115853;115854;115855;115856;115857;115858;115859;115860;115861;115862	156720;156721;156722;156723;156724;156725;156726;156727;156728;156729;156730;156731;156732;156733;156734;156735;156736;156737;156738;156739;156740;156741;156742;156743;156744;156745;156746;156747;156748;156749;156750;156751;156752;156753;156754	156724	2840;2841		34	
GHCPPAPAKPMHPENKLTNHGK	3	2 Acetyl (K)	2501.2056	0.20561623	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	44.175	35.014	4;5	8.872E-13	19343	160513_QHF_FH_JSI10Kac_6	103.26	90.206			0.95977	1.1511	35.005	7	0	Median	1.3267	1.155	NaN	1	0	Median	0.88675	1.0635	39.96	3	0	Plateau	0.6905	0.6683	NaN	1	0	Median	1.2333	1.3185	6.4606	2	0	Median	181710000	107660000	74056000	9742200	4066700	5675600	89677000	50371000	39306000	41050000	34332000	6718300	41244000	18888000	22356000	18932	3330	17935	115863;115864;115865;115866;115867;115868;115869;115870	156755;156756;156757;156758;156759;156760;156761;156762	156761	2840;2841;2842		8	
GHCPPAPAKPMHPENKLTNHGK	3	2 Acetyl (K);Oxidation (M)	2517.2005	0.20053086	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	2	0	1	2				By MS/MS	16	0									1				1	38.458	29.243	4	0.0029438	15426	160513_QHF_FH_JSI12Kac_6	45.369	37.472			1.4014	1.5357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4014	1.5357	NaN	1	0	Median	7820800	3501800	4319000	0	0	0	0	0	0	0	0	0	7820800	3501800	4319000	18933	3330	17935	115871	156763	156763	2840;2841;2842	2246	1	
GHDLNEDGLVSWEEYK	1	Unmodified	1889.8432	0.84317159	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		13								2	4	3	4	64.499	63.59	2;3	5.0639E-30	56088	160511_QHF_FH_JSI10i_2	124.3	113.09			1.0048	1.0227	12.392	10	3	Median	1.0686	0.93046	6.2046	2	0	Median	0.82692	1.0238	5.0607	2	1	Median	1.0006	1.0588	17.311	3	1	Median	1.0508	1.1621	14.727	3	1	Median	756230000	397470000	358770000	107830000	44828000	62998000	207810000	112880000	94931000	335130000	185090000	150040000	105460000	54661000	50801000	18934	388	17936	115872;115873;115874;115875;115876;115877;115878;115879;115880;115881;115882;115883;115884	156764;156765;156766;156767;156768;156769;156770;156771;156772;156773;156774;156775;156776;156777;156778;156779	156778			16	
GHEFYNPQK	1	Unmodified	1118.5145	0.51450765	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.908	14.994	2	0.00030202	11977	160511_QHF_FH_JSI12i_2	83.265	67.062			0.93651	1.0732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93651	1.0732	NaN	1	0	Median	47303000	27864000	19438000	0	0	0	0	0	0	0	0	0	47303000	27864000	19438000	18935	2092	17937	115885	156780	156780			1	
GHEGPVWQVAWAHPMYGNILASCSYDRK	1	Unmodified	3228.5022	0.50219219	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			80.23	74.589	4;5	1.4192E-116	40902	160513_QHF_FH_JSI10Kac_6	237.13	219.22			0.92037	1.0513	0.10643	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92037	1.0513	0.10643	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197720000	110360000	87358000	0	0	0	197720000	110360000	87358000	0	0	0	0	0	0	18936	1860	17938	115886;115887	156781;156782	156782			2	
GHELDVR	0	Unmodified	824.41407	0.41406533	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	8.9639	8.5182	2	0.039053	6217	160511_QHF_FH_JSI12i_2	47.849	30.922			0.82749	0.93502	6.7214	4	0	Median	1.1194	0.97497	NaN	1	0	Median	0.75931	0.92852	NaN	1	0	Median	0.9018	0.94156	NaN	1	0	Median	0.75892	0.83423	NaN	1	0	Median	210380000	110270000	100110000	42294000	20851000	21443000	45056000	23043000	22013000	77336000	39366000	37970000	45696000	27010000	18687000	18937	5495	17939	115888;115889;115890;115891	156783	156783			1	
GHELVPLEQER	0	Unmodified	1305.6677	0.66771383	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.78	31.391	2	0.00057257	26668	160511_QHF_FH_JSI11i_2	70.028	58.877			1.1882	1.1819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1882	1.1819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32379000	15486000	16893000	0	0	0	0	0	0	32379000	15486000	16893000	0	0	0	18938	4165	17940	115892	156784	156784			1	
GHEYTNIK	1	Unmodified	960.46649	0.46649483	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		3								1		2		8.7381	8.448	2;3	0.0076682	6019	160511_QHF_FH_JSI11i_2	58.815	35.292			1.0836	0.94227	18.668	3	1	Median	1.0836	0.94227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98132	0.98037	26.202	2	1	Median	NaN	NaN	NaN	0	0	Median	174700000	83744000	90957000	33802000	14668000	19134000	0	0	0	140900000	69076000	71823000	0	0	0	18939	2239	17941	115893;115894;115895	156785;156786	156785			2	
GHFEAFGTLTDCVVVVNPQTK	1	Unmodified	2318.1365	0.13651684	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.199	78.944	3	1.1128E-07	68554	160511_QHF_FH_JSI12i_3	86.575	79.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18940	2361	17942	115896	156787	156787			1	
GHFFVEDQIYCEK	1	Unmodified	1670.7399	0.73989249	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	3	3	56.164	55.7	2;3	4.2055E-06	49229	160511_QHF_FH_JSI11i_3	124.1	111.89			1.5637	1.5578	41.211	7	3	Median	NaN	NaN	NaN	0	0	Median	1.1425	1.3968	NaN	1	1	Median	1.0362	0.9962	69.479	3	1	Plateau	1.7176	1.5578	9.2341	3	1	Plateau	325750000	139610000	186140000	0	0	0	8687100	5419000	3268100	152190000	63787000	88399000	164870000	70405000	94468000	18941	98	17943	115897;115898;115899;115900;115901;115902;115903;115904	156788;156789;156790;156791;156792;156793;156794	156789			7	
GHFGPINSVAFHPDGK	1	Unmodified	1678.8216	0.82158871	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.55			19						6	10	5	5	5	51.35	48.172	2;3;4	1.1535E-15	40165	160511_QHF_FH_JSI9i_3	159.18	152.46			0.99192	0.9009	13.748	23	5	Median	1.0632	0.88029	15.121	9	4	Median	0.71797	0.83722	10.816	4	1	Median	1.0323	1.0008	5.9677	5	0	Median	0.91886	0.91216	16.208	5	0	Median	7202500000	3766000000	3436600000	2365600000	1180200000	1185400000	702500000	380400000	322110000	2265200000	1141200000	1124000000	1869200000	1064200000	805050000	18942	2391	17944	115905;115906;115907;115908;115909;115910;115911;115912;115913;115914;115915;115916;115917;115918;115919;115920;115921;115922;115923;115924;115925;115926;115927;115928;115929	156795;156796;156797;156798;156799;156800;156801;156802;156803;156804;156805;156806;156807;156808;156809;156810;156811;156812;156813;156814;156815;156816;156817;156818;156819;156820;156821;156822;156823;156824;156825;156826;156827;156828;156829;156830;156831;156832;156833	156812			37	
GHFGPINSVAFHPDGKSYSSGGEDGYVR	1	Acetyl (K)	2978.3583	0.35834795	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.649	62.23	4	2.7886E-08	33697	160513_QHF_FH_JSI11Kac_6	93.166	86.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23627000	23627000	0	0	0	0	0	0	0	23627000	23627000	0	0	0	0	18943	2391	17945	115930	156834;156835	156834	2460		2	
GHFNIQPNK	1	Unmodified	1053.5356	0.53557744	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	16.87	16.336	2;3	3.1207E-11	13403	160511_QHF_FH_JSI10i_3	158.12	123.31			0.70276	0.72986	19.294	8	0	Median	0.88793	0.73019	22.728	2	0	Median	0.63772	0.72986	1.498	2	0	Median	0.58768	0.55149	15.058	2	0	Median	0.83002	0.83737	3.6598	2	0	Median	947670000	618040000	329630000	180010000	107080000	72926000	175500000	114720000	60774000	241710000	173160000	68544000	350460000	223080000	127380000	18944	5309	17946	115931;115932;115933;115934;115935;115936;115937;115938	156836;156837;156838;156839;156840;156841;156842;156843	156838			7	
GHFNIQPNKK	2	Unmodified	1181.6305	0.63054046	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							3	1			12.913	12.053	2;3;4	1.714E-05	9326	160511_QHF_FH_JSI9i_3	89.08	74.386			0.93816	0.81432	11.671	4	1	Median	0.99123	0.8247	14.143	3	1	Median	0.68889	0.80407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	303580000	160820000	142760000	240540000	122530000	118010000	63049000	38291000	24758000	0	0	0	0	0	0	18945	5309	17947	115939;115940;115941;115942	156844;156845;156846;156847;156848;156849	156846			5	
GHFTSLELVPPSTLTTTHLK	1	Unmodified	2178.1685	0.1684689	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	73.486	73.389	3	1.911E-07	65423	160511_QHF_FH_JSI11i_3	104.88	88.575			0.96445	0.9006	10.807	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0585	0.98626	12.85	2	2	Median	0.883	0.89122	NaN	1	0	Median	145430000	73175000	72251000	0	0	0	0	0	0	90285000	42791000	47494000	55141000	30384000	24758000	18946	5458	17948	115943;115944;115945	156850;156851;156852;156853;156854;156855	156852			6	
GHFYMHAGSLLLK	1	Unmodified	1472.7598	0.75984008	1685;31	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			6						18	6	5	5	8	63.892	56.33	2;3;4	1.7232E-13	29930	160513_QHF_FH_JSI10Kac_6	119.16	108.37			0.95689	0.9994	39.351	21	5	Median	0.94316	0.80281	27.284	6	2	Median	0.82374	0.97361	33.899	5	1	Median	1.1913	1.1357	8.1107	4	0	Median	0.94917	0.9977	59.407	6	2	Median	1091900000	599950000	491970000	290720000	152070000	138640000	429790000	267320000	162470000	218540000	95757000	122780000	152870000	84793000	68079000	18947	1685;31	17949	115946;115947;115948;115949;115950;115951;115952;115953;115954;115955;115956;115957;115958;115959;115960;115961;115962;115963;115964;115965;115966;115967;115968;115969	156856;156857;156858;156859;156860;156861;156862;156863;156864;156865;156866;156867;156868;156869;156870;156871;156872;156873;156874;156875;156876;156877;156878;156879;156880;156881;156882;156883;156884;156885;156886	156882			31	
GHGEWAEAMLPTLGK	1	Unmodified	1595.7766	0.77661235	3389	Q86YT6	MIB1	E3 ubiquitin-protein ligase MIB1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.541	69.391	3	5.8663E-05	61828	160511_QHF_FH_JSI11i_3	83.729	65.627			1.1031	1.0846	5.4529	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1189	1.0436	NaN	1	0	Median	1.0875	1.1272	NaN	1	0	Median	41256000	20570000	20686000	0	0	0	0	0	0	16527000	7994300	8532500	24730000	12576000	12154000	18948	3389	17950	115970;115971	156887;156888;156889	156887			3	
GHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYK	1	Unmodified	3858.8265	0.82646548	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.943	84.222	4	1.4835E-05	47810	160513_QHF_FH_JSI10Kac_6	58.382	49.692			0.84166	0.97426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84166	0.97426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81752000	42758000	38993000	0	0	0	81752000	42758000	38993000	0	0	0	0	0	0	18949	5540	17951	115972	156890	156890			1	
GHGLQELK	1	Unmodified	880.47667	0.47666558	385	O43824	GTPBP6	Putative GTP-binding protein 6	yes	yes	0	0	0	0		By matching	By MS/MS		15	0								2			1	1		7.2135	-2.2346	3	0.014017	2533	160513_QHF_FH_JSI11Kac_5	32.841	5.3158			0.63159	0.68382	128.05	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4345	1.6912	NaN	1	0	Median	0.27808	0.2765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23390000	17796000	5594600	0	0	0	4290400	2013300	2277100	19100000	15782000	3317400	0	0	0	18950	385	17952	115973;115974	156891	156891			1	
GHGLSITPLPAGHMIGGTIWK	1	Unmodified	2142.1408	0.14081436	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	81.358	80.863	4	7.886E-06	69317	160511_QHF_FH_JSI12i_3	64.249	55.649			1.0449	0.98709	8.4011	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99636	1.1495	NaN	1	0	Median	1.0528	0.97269	NaN	1	0	Median	1.0235	1.0411	NaN	1	0	Median	91062000	36960000	54103000	0	0	0	13231000	5991700	7239000	44026000	16557000	27469000	33806000	14411000	19395000	18951	5214	17953	115975;115976;115977	156892;156893;156894;156895;156896	156896			5	
GHGTYMGEEK	1	Unmodified	1107.4655	0.46550855	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	7.0924	7.0431	2	2.2159E-07	4474	160511_QHF_FH_JSI12i_3	116.05	99.848			1.2109	1.2388	0.43364	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2755	1.2426	NaN	1	1	Median	1.1496	1.235	NaN	1	0	Median	37656000	19009000	18646000	0	0	0	0	0	0	17714000	8814300	8899800	19941000	10195000	9746500	18952	2476	17954	115978;115979;115980;115981;115982	156897;156898;156899;156900;156901	156901			5	
GHHLPSENLGK	1	Unmodified	1187.6047	0.60471964	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.562	13.635	3	0.00076625	10626	160511_QHF_FH_JSI12i_3	56.043	50.262			3.1833	3.2347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1833	3.2347	NaN	1	0	Median	96485000	14454000	82031000	0	0	0	0	0	0	0	0	0	96485000	14454000	82031000	18953	3660	17955	115983	156902	156902			1	
GHIASVLNAWPEDVIK	1	Unmodified	1747.9257	0.92571943	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	81.019	80.395	2;3	1.5279E-80	69648	160511_QHF_FH_JSI12i_3	243.11	230.53			0.99327	0.96403	39.256	5	2	Median	NaN	NaN	NaN	0	0	Median	1.527	1.8139	16.956	2	2	Median	0.99327	0.9436	NaN	1	0	Median	0.87737	0.89174	11.024	2	0	Median	538830000	270600000	268230000	0	0	0	50541000	23026000	27516000	206000000	108950000	97050000	282280000	138620000	143660000	18954	1616	17956	115984;115985;115986;115987;115988;115989	156903;156904;156905;156906;156907;156908;156909;156910;156911;156912;156913	156913			11	
GHIAVSAAVFPTGTK	1	Unmodified	1454.7882	0.78816332	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	6.5		2	8						7	4	7	3	3	53.585	49.066	2;3	2.3219E-32	26646	160513_QHF_FH_JSI11Kac_6	161.99	141.78			0.88928	0.87243	24.231	14	9	Median	1.0369	0.8721	34.626	3	2	Median	0.69572	0.80652	26.558	5	4	Median	0.94508	0.94491	9.7669	3	1	Median	0.97412	0.9914	16.301	3	2	Median	645010000	340350000	304660000	140020000	74430000	65592000	264460000	150430000	114030000	97423000	46299000	51124000	143110000	69195000	73915000	18955	4930	17957	115990;115991;115992;115993;115994;115995;115996;115997;115998;115999;116000;116001;116002;116003;116004;116005;116006	156914;156915;156916;156917;156918;156919;156920;156921;156922;156923;156924;156925;156926;156927;156928;156929;156930;156931;156932;156933;156934;156935	156922			22	
GHIIVDEFQNTNVK	1	Unmodified	1612.8209	0.82092001	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.78		7	5						2	4	2	5	3	48.801	47.344	2;3	2.635E-81	41645	160511_QHF_FH_JSI11i_3	295.07	266.11			1.0198	1.0784	25.921	10	4	Median	1.7661	1.5096	33.834	2	1	Median	0.81135	0.98839	31.459	2	2	Median	0.94527	0.88305	2.8564	3	1	Plateau	1.0388	1.0889	5.9635	3	0	Median	1871000000	927910000	943140000	79771000	34903000	44868000	310690000	169100000	141580000	581500000	273860000	307640000	899100000	450040000	449050000	18956	765	17958	116007;116008;116009;116010;116011;116012;116013;116014;116015;116016;116017;116018;116019;116020	156936;156937;156938;156939;156940;156941;156942;156943;156944;156945;156946;156947;156948;156949;156950;156951;156952;156953;156954	156936			19	
GHIPYPLPPNYSYGLCPGNGTTK	1	Unmodified	2502.2002	0.20017973	3590	Q8NBI5	SLC43A3	Solute carrier family 43 member 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	71.276	70.978	3	7.4916E-10	61636	160511_QHF_FH_JSI12i_3	96.016	88.477			1.2447	1.243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2447	1.243	NaN	1	0	Median	53474000	25281000	28193000	0	0	0	0	0	0	0	0	0	53474000	25281000	28193000	18957	3590	17959	116021;116022;116023;116024;116025;116026	156955;156956;156957;156958;156959;156960;156961;156962	156958			8	
GHKNTVCSLSSGK	2	Acetyl (K)	1415.6827	0.68271197	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		21.802	12.669	2	0.016993	8444	160513_QHF_FH_JSI11Kac_6	60.434	32.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	748790	748790	0	0	0	0	0	0	0	748790	748790	0	0	0	0	18958	5495	17960	116027	156963	156963	3456		1	
GHLDAELDAYMAQTDPETND	0	Unmodified	2204.9168	0.91680682	5605	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.443	72.878	2	0.012991	66389	160511_QHF_FH_JSI12i_1	45.28	33.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19708000	0	19708000	0	0	0	0	0	0	0	0	0	19708000	0	19708000	18959	5605	17961	116028	156964	156964			1	
GHLDALTADVK	1	Unmodified	1138.5982	0.59823728	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		6						2		2	1	3	2	37.42	34.839	2;3	3.1669E-06	30281	160511_QHF_FH_JSI9i_2	110.38	72.089			0.86265	0.85104	71.539	6	3	Median	0.56536	0.49049	NaN	1	1	Median	1.0413	1.2904	NaN	1	0	Median	0.86265	0.85104	25.192	2	1	Median	1.4044	1.5559	121.74	2	1	Median	149810000	75976000	73834000	24475000	16171000	8304200	30676000	15720000	14956000	43137000	21486000	21650000	51523000	22598000	28924000	18960	1895	17962	116029;116030;116031;116032;116033;116034;116035;116036	156965;156966;156967;156968;156969;156970;156971;156972	156968			6	
GHLDNISNNLLIGAINIENGK	1	Unmodified	2218.1706	0.17059416	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	89.48	89.335	3	2.6629E-06	79604	160511_QHF_FH_JSI11i_3	70.315	61.268			0.72691	0.71205	65.572	4	3	Median	0.26823	0.23393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89172	0.82543	NaN	1	0	Median	0.76998	0.79872	37.14	2	2	Median	379770000	213260000	166510000	24181000	17164000	7017200	0	0	0	86134000	40445000	45689000	269450000	155650000	113800000	18961	4315	17963	116037;116038;116039;116040	156973;156974;156975;156976;156977;156978	156974			6	
GHLENNPALEK	1	Unmodified	1220.6149	0.61494998	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.68	6.29		8	8				4	10	7	10	10	7	10	19.36	14.497	2;3	9.2698E-38	12499	160511_QHF_FH_JSI10i_2	201.84	136.6			0.94815	0.9704	12.491	35	3	Median	1.1739	0.97285	7.2565	8	0	Median	0.77972	0.93425	17.157	10	1	Median	1.0428	1.089	8.6375	7	0	Linear	0.92315	0.97714	11.992	10	2	Median	18450000000	8991600000	9458500000	2950000000	1082100000	1867900000	3271100000	1952700000	1318400000	6175200000	3163900000	3011300000	6053800000	2792900000	3261000000	18962	837	17964	116041;116042;116043;116044;116045;116046;116047;116048;116049;116050;116051;116052;116053;116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066;116067;116068;116069;116070;116071;116072;116073;116074;116075;116076;116077	156979;156980;156981;156982;156983;156984;156985;156986;156987;156988;156989;156990;156991;156992;156993;156994;156995;156996;156997;156998;156999;157000;157001;157002;157003;157004;157005;157006;157007;157008;157009;157010;157011;157012;157013;157014;157015;157016;157017;157018;157019;157020;157021;157022;157023;157024;157025;157026;157027;157028;157029;157030;157031;157032;157033;157034;157035;157036;157037;157038	157021			60	
GHLENNPALEKLLPHIR	1	Acetyl (K)	1992.0905	0.090493347	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		79.271	71.146	3;4	1.3904E-06	38620	160513_QHF_FH_JSI11Kac_6	154.49	113.53			0.073497	0.068356	190.36	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3235	1.5572	NaN	1	0	Median	0.062275	0.058275	22.565	2	2	Median	NaN	NaN	NaN	0	0	Median	240960000	176490000	64467000	0	0	0	102900000	42456000	60446000	138050000	134030000	4021500	0	0	0	18963	837	17965	116078;116079;116080	157039;157040;157041	157039	488		3	
GHLFGPAPGEQTQAVAIK	1	Unmodified	1819.9581	0.95808219	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	51.055	50.33	2;3	1.9062E-41	42985	160511_QHF_FH_JSI12i_3	158.29	141.89			0.94402	0.96372	19.28	5	0	Median	1.7533	1.4522	NaN	1	0	Median	0.83773	0.93939	NaN	1	0	Median	1.0187	0.96372	NaN	1	0	Median	0.92173	0.94111	3.896	2	0	Median	693320000	332770000	360550000	35363000	14442000	20921000	102830000	54692000	48138000	255680000	126530000	129150000	299450000	137100000	162350000	18964	2181	17966	116081;116082;116083;116084;116085;116086	157042;157043;157044;157045;157046;157047;157048;157049;157050;157051;157052;157053	157053			12	
GHLIAWANNMGVK	1	Unmodified	1409.7238	0.72378892	1677	P49754	VPS41	Vacuolar protein sorting-associated protein 41 homolog	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		64.625	54.959	3	0.0038348	29788	160513_QHF_FH_JSI11Kac_6	51.979	38.575			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18965	1677	17967	116087	157054	157054			1	
GHLLDSFAR	0	Unmodified	1014.5247	0.52467841	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	38.186	37.635	2;3	2.6258E-06	32894	160511_QHF_FH_JSI11i_3	125.81	85.128			0.995	1.0495	10.654	6	0	Median	1.4273	1.178	NaN	1	0	Median	0.87291	1.0086	NaN	1	0	Median	0.97547	0.92187	0.13036	2	0	Median	1.035	1.117	3.1825	2	0	Median	466170000	215040000	251130000	68814000	24797000	44017000	70844000	35902000	34942000	185580000	84612000	100970000	140930000	69724000	71210000	18966	4930	17968	116088;116089;116090;116091;116092;116093	157055;157056;157057;157058;157059;157060;157061;157062;157063;157064;157065;157066	157058			12	
GHLLYVALSPGQHR	0	Unmodified	1546.8368	0.83684484	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									18	7	4	4	3	53.532	44.209	2;3;4	6.2871E-31	24054	160513_QHF_FH_JSI10Kac_6	166.04	146.98			1.2108	1.2065	27.869	14	2	Median	0.86896	0.76085	22.357	5	1	Median	1.0075	1.2035	0.47409	3	0	Plateau	1.2873	1.2094	8.7256	3	1	Plateau	1.2874	1.3575	11.494	3	0	Median	2657400000	1297100000	1360300000	683090000	393460000	289630000	1164600000	565160000	599410000	433510000	176130000	257390000	376220000	162330000	213890000	18967	241	17969	116094;116095;116096;116097;116098;116099;116100;116101;116102;116103;116104;116105;116106;116107;116108;116109;116110;116111	157067;157068;157069;157070;157071;157072;157073;157074;157075;157076;157077;157078;157079;157080;157081;157082;157083;157084;157085;157086;157087;157088;157089;157090;157091;157092;157093;157094;157095;157096;157097;157098;157099;157100;157101;157102;157103	157096			36	
GHLSAILAIK	1	Unmodified	1021.6284	0.6284152	2206	Q03169	TNFAIP2	Tumor necrosis factor alpha-induced protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	1	2	55.108	49.988	2;3	0.0011084	42083	160511_QHF_FH_JSI12i_3	64.04	49.833			0.94965	0.92996	61.065	6	3	Median	0.68814	0.5753	57.56	2	1	Median	0.70954	0.82351	27.548	2	0	Median	1.371	1.3259	NaN	1	1	Median	2.1658	2.3272	NaN	1	1	Median	65348000	29818000	35530000	17499000	10216000	7282900	19693000	10499000	9193900	8554700	3651300	4903400	19601000	5451100	14150000	18968	2206	17970	116112;116113;116114;116115;116116;116117;116118	157104;157105;157106;157107;157108;157109	157107			4	
GHLSGLAK	1	Unmodified	781.44464	0.44463717	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	9.5839	9.3004	2	0.0016632	6499	160511_QHF_FH_JSI12i_3	86.472	26.863			0.98642	1.0159	21.766	4	0	Median	0.83489	0.68072	NaN	1	0	Median	0.90017	1.0208	NaN	1	0	Median	1.0809	1.011	NaN	1	0	Median	1.1052	1.1041	NaN	1	0	Median	716120000	343050000	373070000	142130000	73181000	68950000	129150000	75772000	53377000	110560000	56456000	54100000	334280000	137640000	196650000	18969	2636	17971	116119;116120;116121;116122	157110;157111;157112;157113;157114	157114			5	
GHMNYEGPGMAR	0	Unmodified	1318.5547	0.55467468	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			4								1	3		19.224	19.224	2;3	0.003797	16116	160511_QHF_FH_JSI11i_3	64.297	59.685			1.2202	1.1318	8.6974	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2202	1.1318	8.6974	2	2	Median	NaN	NaN	NaN	0	0	Median	44508000	18223000	26285000	0	0	0	0	0	0	44508000	18223000	26285000	0	0	0	18970	4714	17972	116123;116124;116125;116126	157115;157116;157117;157118	157116			4	
GHMTTEAK	1	Unmodified	873.40145	0.40145173	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	1.5694	1.1128	2	0.03013	540	160511_QHF_FH_JSI9i_2	41.652	30.284			0.81149	0.80636	44.357	2	0	Median	1.275	1.1034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51649	0.58927	NaN	1	0	Median	24195000	11401000	12794000	14043000	5547100	8496200	0	0	0	0	0	0	10152000	5854000	4298100	18971	4271	17973	116127;116128	157119	157119			1	
GHNGWVTQIATTPQFPDMILSASR	0	Unmodified	2626.2962	0.29620538	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		2	5						1	2	3	2	1	98.764	97.512	3	1.3624E-24	82986	160511_QHF_FH_JSI10i_3	151.84	144.48			1.2979	1.0109	15.424	8	3	Linear	1.0697	0.89998	27.486	2	1	Median	1.0578	1.2118	12.386	3	1	Plateau	1.0552	1.0109	4.5115	2	0	Median	0.87036	0.85945	NaN	1	1	Median	1359200000	646630000	712580000	368130000	158230000	209900000	584440000	282650000	301790000	276950000	128960000	148000000	129690000	76797000	52889000	18972	2061	17974	116129;116130;116131;116132;116133;116134;116135;116136	157120;157121;157122;157123;157124;157125;157126;157127;157128	157121			9	
GHNGWVTQIATTPQFPDMILSASR	0	Oxidation (M)	2642.2911	0.29112	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	3	1	1	90.908	88.458	3	1.184E-10	75823	160511_QHF_FH_JSI10i_3	86.856	83.975			0.95208	1.081	15.568	6	2	Median	1.3975	1.1344	1.0521	2	0	Median	0.92922	1.0458	10.561	3	1	Median	NaN	NaN	NaN	0	0	Median	0.7343	0.77305	NaN	1	1	Median	233830000	117110000	116720000	94547000	40688000	53859000	107380000	58074000	49307000	0	0	0	31901000	18352000	13549000	18973	2061	17974	116137;116138;116139;116140;116141;116142;116143	157129;157130;157131;157132;157133;157134;157135;157136	157130		1724	8	
GHNTLPSPWR	0	Unmodified	1163.5836	0.58359027	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				34.939	33.496	2	9.427E-06	27273	160511_QHF_FH_JSI9i_3	105.4	95.808			0.92063	0.74871	NaN	1	0	Median	0.92063	0.74871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26928000	12289000	14639000	26928000	12289000	14639000	0	0	0	0	0	0	0	0	0	18974	1609	17975	116144	157137	157137			1	
GHNTNVGAIVFHPK	1	Unmodified	1489.779	0.77899561	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							3	2			34.824	33.39	3;4	0.0001067	27787	160511_QHF_FH_JSI10i_3	72.175	60.735			0.91064	0.99904	18.276	5	1	Median	1.3501	1.1213	24.474	3	1	Plateau	0.8524	0.99612	11.585	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	472310000	229980000	242330000	281970000	123640000	158330000	190330000	106340000	83997000	0	0	0	0	0	0	18975	308	17976	116145;116146;116147;116148;116149	157138;157139;157140;157141	157138			4	
GHPDLQGQPAEEIFESVGDR	0	Unmodified	2180.0134	0.013424818	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	71.686	71.111	3	1.3909E-05	61681	160511_QHF_FH_JSI12i_3	88	72.408			0.83582	0.76958	8.3827	2	2	Median	0.85014	0.72529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82175	0.81657	NaN	1	1	Median	152960000	76523000	76436000	49344000	22493000	26851000	0	0	0	0	0	0	103620000	54030000	49585000	18976	1648	17977	116150;116151	157142;157143	157143			2	
GHPDVATMLNILALVYR	0	Unmodified	1882.0135	0.01348858	4985	Q9NSK0	KLC4	Kinesin light chain 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	97.36	88.941	3	9.4581E-12	50432	160513_QHF_FH_JSI9Kac_6	128.71	109.87			0.95202	0.95054	21.168	4	1	Median	1.1242	0.96832	NaN	1	0	Median	0.55071	0.63011	NaN	1	1	Median	1.0389	0.97998	NaN	1	0	Median	0.87242	0.93309	NaN	1	0	Median	401680000	191510000	210170000	73915000	36399000	37517000	83256000	40240000	43016000	158960000	79614000	79342000	85553000	35263000	50290000	18977	4985	17978	116152;116153;116154;116155	157144;157145;157146	157144			3	
GHPEFSTNR	0	Unmodified	1043.4785	0.4784565	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	3.65		7	5						1	2	3	5	3	9.5484	9.2588	2;3	1.429E-06	6902	160511_QHF_FH_JSI11i_3	96.668	91.68			0.95045	1.0099	9.386	12	0	Median	1.3159	1.119	11.163	2	0	Median	0.78969	1.0261	4.771	3	0	Plateau	1.0146	0.98198	8.1835	4	0	Median	0.87511	0.90363	8.7768	3	0	Median	1986700000	1006100000	980610000	200640000	88764000	111870000	385130000	214180000	170940000	672760000	314960000	357800000	728200000	388210000	339990000	18978	1573	17979	116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168	157147;157148;157149;157150;157151;157152;157153;157154;157155;157156;157157;157158;157159	157149			13	
GHPHSASSPSER	0	Unmodified	1247.5643	0.56431139	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			3.0419	2.579	3	0.00019942	1493	160511_QHF_FH_JSI10i_3	60.301	52.936			1.0406	1.0458	44.957	2	0	Median	1.6811	1.4372	NaN	1	0	Median	0.64409	0.76102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26897000	17482000	9415500	8203100	3382800	4820300	18694000	14099000	4595200	0	0	0	0	0	0	18979	2594	17980	116169;116170	157160	157160			1	
GHPLGDIVAFLTSTEPQYGQGILSQDAWESLFSR	0	Unmodified	3718.8267	0.82674025	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.694	93.974	3	7.8619E-41	55243	160513_QHF_FH_JSI10Kac_6	138.8	129.58			1.0453	1.2194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0453	1.2194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195000000	100230000	94778000	0	0	0	195000000	100230000	94778000	0	0	0	0	0	0	18980	1650	17981	116171	157161	157161			1	
GHPQDPLLSQFSAMAHK	1	Unmodified	1862.9098	0.90975179	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	63.696	63.553	3;4	1.8569E-09	56347	160511_QHF_FH_JSI11i_3	133.9	116.43			0.95711	0.92073	5.3033	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99584	0.92073	3.6207	2	1	Median	0.89961	0.92244	8.4398	2	0	Median	441900000	233510000	208390000	0	0	0	0	0	0	187050000	89448000	97606000	254850000	144070000	110780000	18981	1892	17982	116172;116173;116174;116175	157162;157163;157164;157165;157166;157167	157164			6	
GHPSFLPQQK	1	Unmodified	1137.5931	0.59309232	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.662	23.644	2	0.013502	19577	160511_QHF_FH_JSI12i_3	53.775	37.572			0.3208	0.32304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3208	0.32304	NaN	1	1	Median	35868000	29181000	6686700	0	0	0	0	0	0	0	0	0	35868000	29181000	6686700	18982	325	17983	116176	157168	157168			1	
GHPSFQSLVSK	1	Unmodified	1185.6142	0.6142217	4645	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	37.079	36.406	2;3	6.4613E-05	30811	160511_QHF_FH_JSI12i_3	77.674	70.628			1.2295	1.1439	29.598	7	1	Median	1.6037	1.3289	22.95	2	1	Median	1.3852	1.5876	NaN	1	0	Median	1.0218	0.94468	27.063	2	0	Median	0.95314	0.95084	32.854	2	0	Median	497310000	248780000	248530000	130990000	56423000	74571000	73089000	37430000	35659000	108530000	51467000	57060000	184700000	103460000	81238000	18983	4645	17984	116177;116178;116179;116180;116181;116182;116183	157169;157170;157171;157172;157173;157174;157175;157176;157177;157178	157177			10	
GHQAFDVGQPR	0	Unmodified	1210.5843	0.58431855	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	2	3	19.052	18.563	2;3	8.1557E-06	15337	160511_QHF_FH_JSI11i_3	112.36	101.53			0.98727	0.98477	38.029	9	5	Median	1.2179	1.0327	31.662	2	1	Median	1.0634	1.2918	10.603	2	2	Median	0.81307	0.76951	54.63	2	1	Median	0.71612	0.77417	30.991	3	1	Plateau	614800000	331070000	283730000	74470000	37201000	37269000	131100000	71233000	59868000	203260000	111530000	91728000	205970000	111100000	94866000	18984	1005	17985	116184;116185;116186;116187;116188;116189;116190;116191;116192	157179;157180;157181;157182;157183;157184;157185;157186;157187;157188;157189	157180			11	
GHQGFGVLSVILANHAIK	1	Unmodified	1860.037	0.037001214	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									7	1	4	2		82.253	74.914	2;3;4	4.6408E-08	40965	160513_QHF_FH_JSI11Kac_6	108.96	93.81			1.0067	1.0219	10.936	6	0	Median	1.3493	1.1339	NaN	1	0	Median	0.87149	1.0358	15.258	3	0	Median	1.0326	0.99151	2.3577	2	0	Median	NaN	NaN	NaN	0	0	Median	741970000	357480000	384490000	209370000	87340000	122030000	438460000	224150000	214310000	94146000	45994000	48152000	0	0	0	18985	2947	17986	116193;116194;116195;116196;116197;116198;116199	157190;157191;157192;157193;157194;157195;157196	157190			7	
GHQMLVK	1	Unmodified	811.43744	0.4374433	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	9.089	8.8594	2	0.010586	6125	160511_QHF_FH_JSI12i_3	74.191	36.238			1.157	0.98982	24.524	4	0	Linear	0.82946	0.71598	NaN	1	0	Median	0.84998	1.0555	NaN	1	0	Median	0.97422	0.92819	NaN	1	0	Median	1.2722	1.2853	NaN	1	0	Median	314930000	147190000	167750000	19672000	10483000	9189500	27989000	14599000	13391000	127360000	62055000	65302000	139920000	60052000	79863000	18986	3432	17987	116200;116201;116202;116203	157197;157198;157199	157199			3	
GHQQLYWSHPR	0	Unmodified	1407.6796	0.67961592	1994	P62273	RPS29	40S ribosomal protein S29	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			37.934	29.352	3;4	0.0020276	16511	160513_QHF_FH_JSI10Kac_6	51.841	43.328			1.1375	1.3028	15.78	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1375	1.3028	15.78	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13259000	5846100	7412500	0	0	0	13259000	5846100	7412500	0	0	0	0	0	0	18987	1994	17988	116204;116205;116206	157200;157201;157202	157200			1	
GHRIEEVPELPLVVEDK	1	Unmodified	1958.0473	0.047291129	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		10	14							7	11	5	1	70.602	69.85	2;3;4	2.3655E-09	59803	160511_QHF_FH_JSI11i_3	169.19	116.85			1.0231	1.0921	36.99	20	11	Median	0.98777	0.83216	38.985	6	6	Median	0.93202	1.1176	40.173	8	3	Median	1.2062	1.0898	18.948	5	2	Median	1.3288	1.2989	NaN	1	0	Median	2323600000	988600000	1335000000	353590000	195130000	158460000	420780000	213590000	207190000	1505500000	559700000	945820000	43743000	20187000	23556000	18988	1457	17989	116207;116208;116209;116210;116211;116212;116213;116214;116215;116216;116217;116218;116219;116220;116221;116222;116223;116224;116225;116226;116227;116228;116229;116230	157203;157204;157205;157206;157207;157208;157209;157210;157211;157212;157213;157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224;157225;157226;157227;157228;157229;157230;157231;157232;157233;157234;157235;157236;157237;157238;157239;157240	157208			38	
GHSGGSGGGGSGSGPGIK	1	Unmodified	1411.644	0.64401827	2847	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			5.4207	4.9244	2	1.3823E-05	3002	160511_QHF_FH_JSI10i_3	98.531	87.367			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6505400	6505400	0	0	0	0	6505400	6505400	0	0	0	0	0	0	0	18989	2847	17990	116231	157241	157241			1	
GHSLSDGLEEVQK	1	Unmodified	1397.6787	0.67867245	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.15	3.44		10	2					1		2	3	4	4	34.709	33.035	2;3	9.6972E-31	28978	160511_QHF_FH_JSI10i_2	190.86	176.65			0.90649	0.91146	47.474	12	3	Median	0.93103	0.78999	0.43164	2	0	Median	0.66184	0.81857	68.239	3	0	Plateau	0.89262	0.90129	53.716	3	1	Median	0.94956	1.0608	23.502	4	2	Median	612320000	310000000	302320000	111260000	56782000	54478000	149030000	78874000	70155000	188360000	91447000	96916000	163670000	82901000	80769000	18990	524	17991	116232;116233;116234;116235;116236;116237;116238;116239;116240;116241;116242;116243;116244	157242;157243;157244;157245;157246;157247;157248;157249;157250;157251;157252;157253;157254;157255;157256	157254			15	
GHSPAQKPK	2	Acetyl (K)	990.52468	0.52467841	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.3	0.471								2	1			2	1	7.0429	-2.3933	3	0.0074792	2405	160513_QHF_FH_JSI12Kac_5	45.368	36.904			0.85472	0.87824	7.9136	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83779	0.83045	NaN	1	0	Median	0.87199	0.92879	NaN	1	0	Median	9435400	5059500	4375900	0	0	0	0	0	0	5797100	3097700	2699400	3638300	1961900	1676400	18991	2584	17992	116245;116246;116247	157257;157258	157258	2556		2	
GHSSFVNEATFTQDGHYIISASSDGTVK	1	Unmodified	2954.3682	0.36824393	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	69.992	69.694	3;4	2.2451E-14	60328	160511_QHF_FH_JSI12i_3	86.551	84.044			1.0926	1.1025	0.057982	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0926	1.1025	0.057982	2	0	Median	174540000	77982000	96559000	0	0	0	0	0	0	0	0	0	174540000	77982000	96559000	18992	2801	17993	116248;116249	157259;157260;157261	157259			3	
GHSTCLSEGALSPDGTVLATASHDGYVK	1	Unmodified	2829.3239	0.32393627	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.619	61.619	4	0.0010094	54763	160511_QHF_FH_JSI11i_3	43.306	38.696			0.90725	0.85738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90725	0.85738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41634000	25763000	15871000	0	0	0	0	0	0	41634000	25763000	15871000	0	0	0	18993	3100	17994	116250	157262	157262			0	
GHSVVFHSTVIAK	1	Unmodified	1380.7514	0.75138388	3179	Q6ZN18	AEBP2	Zinc finger protein AEBP2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				38.021	28.99	3	0.05914	15735	160513_QHF_FH_JSI9Kac_6	23.362	18.929			0.50509	0.44106	NaN	1	1	Median	0.50509	0.44106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2888200	1775100	1113100	2888200	1775100	1113100	0	0	0	0	0	0	0	0	0	18994	3179	17995	116251	157263	157263			1	
GHTADLLDLSWSK	1	Unmodified	1441.7201	0.72014333	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	71.213	70.148	2;3	0.00049037	60558	160511_QHF_FH_JSI12i_2	90.653	75.387			0.94239	0.99276	6.893	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90326	0.93724	NaN	1	0	Median	0.91335	0.9887	8.7167	2	1	Median	96058000	56574000	39484000	0	0	0	0	0	0	36021000	21972000	14049000	60038000	34602000	25436000	18995	2902	17996	116252;116253;116254	157264;157265	157264			1	
GHTAEILDFALSK	1	Unmodified	1400.73	0.72997974	2464	Q13685	AAMP	Angio-associated migratory cell protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	69.996	69.532	2;3	1.1502E-05	60001	160511_QHF_FH_JSI12i_3	147.91	120.79			0.99883	1.0175	78.328	3	1	Median	NaN	NaN	NaN	0	0	Median	0.23684	0.28862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0815	1.1112	12.453	2	0	Median	125340000	62029000	63311000	0	0	0	22876000	17673000	5203300	0	0	0	102460000	44356000	58108000	18996	2464	17997	116255;116256;116257	157266;157267;157268;157269	157267			4	
GHTDSVQDISFDHSGK	1	Unmodified	1728.7703	0.770341	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							3	2	4	4	27.64	27.092	2;3;4	6.3283E-16	22954	160511_QHF_FH_JSI11i_3	163.8	150.69			0.93156	1.0174	21.513	11	0	Median	1.0827	0.93236	17.408	2	0	Median	1.0001	1.2394	9.0276	2	0	Median	0.85913	0.96367	18.941	4	0	Linear	1.0759	1.0366	3.2323	3	0	Plateau	969430000	468890000	500540000	96477000	39453000	57024000	180610000	93311000	87299000	327350000	162140000	165220000	364990000	173990000	191000000	18997	1553	17998	116258;116259;116260;116261;116262;116263;116264;116265;116266;116267;116268;116269;116270	157270;157271;157272;157273;157274;157275;157276;157277;157278;157279;157280;157281;157282;157283;157284;157285	157270			15	
GHTEESMTNDK	1	Unmodified	1247.5088	0.50882993	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	1	3	5.5249	5.0767	2;3	2.7219E-36	3015	160511_QHF_FH_JSI12i_2	174.41	153.11			1.1428	1.3132	37.603	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5204	2.5129	NaN	1	0	Median	1.1418	1.3102	0.32785	2	1	Median	143770000	54058000	89717000	0	0	0	12838000	0	12838000	40924000	12609000	28315000	90012000	41449000	48564000	18998	1576	17999	116271;116272;116273;116274;116275;116276	157286;157287;157288;157289;157290;157291;157292	157288			7	
GHTFAEELQK	1	Unmodified	1158.5669	0.56693715	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	25.645	25.079	2;3	2.6705E-07	20586	160511_QHF_FH_JSI12i_3	113.71	97.167			1.0127	1.1225	23.394	7	1	Median	0.89548	0.7654	NaN	1	0	Median	1.0127	1.2545	NaN	1	0	Median	1.2196	1.2432	17.777	2	1	Median	1.0034	1.1225	23.82	3	0	Median	347480000	188470000	159010000	39038000	21986000	17053000	59725000	44458000	15267000	76043000	32156000	43887000	172670000	89868000	82807000	18999	4065	18000	116277;116278;116279;116280;116281;116282;116283	157293;157294;157295;157296;157297	157297			3	
GHTLAGEEFMGLGLGNLVSGGVDK	1	Unmodified	2357.1685	0.16854525	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.112	98.122	3	2.853E-11	84986	160511_QHF_FH_JSI12i_3	95.835	87.341			1.4045	1.3901	43.534	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0005	1.8912	NaN	1	0	Median	0.98605	1.0218	NaN	1	0	Median	61914000	31628000	30287000	0	0	0	0	0	0	22974000	9181000	13793000	38940000	22447000	16493000	19000	5718	18001	116284;116285	157298;157299	157299			2	
GHTNAGDAIYEVVSLQR	0	Unmodified	1828.9068	0.9067749	2917	Q5R372	RABGAP1L	Rab GTPase-activating protein 1-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.06	64.77	3	0.012986	55942	160511_QHF_FH_JSI12i_3	38.227	31.499			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19001	2917	18002	116286	157300	157300			1	
GHTQQDPEVPK	1	Unmodified	1234.5942	0.59421454	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		2	2	9.4818	8.9764	2;3	4.4971E-09	6601	160511_QHF_FH_JSI11i_2	123.75	98.611			1.1207	1.2396	20.035	4	2	Median	0.94021	0.83159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2472	1.2426	NaN	1	0	Median	1.1207	1.2408	0.47322	2	1	Median	125920000	59728000	66194000	32871000	16760000	16111000	0	0	0	51707000	20410000	31297000	41344000	22558000	18786000	19002	2099	18003	116287;116288;116289;116290;116291;116292	157301;157302;157303;157304;157305	157305			5	
GHTQSADWWSFGVLMFEMLTGTLPFQGK	1	Unmodified	3170.4994	0.49939822	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.3	98.583	3	1.5815E-08	58326	160513_QHF_FH_JSI10Kac_6	94.549	86.385			0.5903	0.68317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5903	0.68317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55549000	44648000	10901000	0	0	0	55549000	44648000	10901000	0	0	0	0	0	0	19003	1755	18004	116293	157306	157306			1	
GHTSFVNSCYPAR	0	Unmodified	1494.6674	0.66739625	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	2	2	2	3	31.968	24.143	3	3.8426E-13	13699	160513_QHF_FH_JSI10Kac_6	128.28	120.74			1.4669	1.489	34.953	7	4	Median	1.6315	1.489	NaN	1	1	Median	0.94945	1.1109	4.5487	2	0	Median	1.4693	1.4911	69.465	2	1	Median	1.579	1.7908	12.346	2	2	Median	52611000	26154000	26458000	1304300	333160	971130	38936000	20902000	18034000	6722400	2938300	3784100	5649000	1979900	3669100	19004	4029	18005	116294;116295;116296;116297;116298;116299;116300;116301;116302	157307;157308;157309;157310;157311;157312;157313;157314;157315;157316;157317	157316			11	
GHTVTEPIQPLEPELPGEGQPEAR	0	Unmodified	2580.282	0.2819951	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	65.116	64.586	3	3.8171E-05	55566	160511_QHF_FH_JSI12i_2	54.235	45.74			1.3228	1.2345	33.668	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3228	1.2345	NaN	1	0	Median	1.279	1.2955	47.451	2	0	Median	100240000	39559000	60685000	0	0	0	0	0	0	41323000	16070000	25253000	58922000	23489000	35433000	19005	293	18006	116303;116304;116305	157318;157319;157320;157321	157320			2	
GHVDILAPTVQELAALEK	1	Unmodified	1903.0415	0.041477469	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	93.897	93.465	2;3	7.8051E-17	80885	160511_QHF_FH_JSI12i_2	150.28	134.88			0.89564	0.94445	30.057	7	1	Median	0.71357	0.623	41.782	2	1	Median	0.83927	1.0094	NaN	1	0	Median	0.78816	0.80175	31.626	2	0	Median	0.91471	0.98672	6.192	2	0	Median	680890000	322990000	357900000	152220000	76313000	75912000	117610000	49059000	68555000	188640000	95378000	93259000	222420000	102240000	120180000	19006	3828	18007	116306;116307;116308;116309;116310;116311;116312	157322;157323;157324;157325;157326;157327;157328;157329;157330;157331;157332;157333;157334;157335;157336;157337;157338;157339;157340;157341	157324			20	
GHVELSEAR	0	Unmodified	996.49886	0.49885759	4104	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.288	10.087	2	0.0023376	7623	160511_QHF_FH_JSI11i_2	74.486	49.563			0.97786	1.0178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97786	1.0178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36616000	18801000	17815000	0	0	0	0	0	0	36616000	18801000	17815000	0	0	0	19007	4104	18008	116313	157342	157342			1	
GHVFEESQVAGTPMFVVK	1	Oxidation (M)	1976.9666	0.96659797	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	9.5	6.5			2						2			2	2	64.448	59.549	3	3.3886E-07	51496	160511_QHF_FH_JSI12i_3	103.67	99.827			1.0614	1.1	20.513	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94585	0.90392	16.454	2	0	Median	1.1764	1.2337	4.9194	2	1	Median	311670000	147420000	164240000	0	0	0	0	0	0	138160000	77536000	60625000	173500000	69887000	103620000	19008	1033	18009	116314;116315;116316;116317	157343;157344;157345;157346;157347;157348	157346		630	6	
GHVFEESQVAGTPMFVVK	1	Unmodified	1960.9717	0.97168334	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		8	8						2	4	4	5	5	69.905	68.465	2;3	1.4005E-185	60915	160511_QHF_FH_JSI10i_2	323.66	303.98			1.0955	1.1558	31.293	14	2	Median	1.3446	1.1361	3.1102	3	0	Plateau	0.61356	0.7478	11.97	3	1	Plateau	0.84469	0.85405	5.187	3	0	Median	1.3014	1.2702	20.685	5	1	Median	6865700000	3152600000	3713100000	1158300000	449730000	708570000	1291200000	761370000	529800000	1759700000	883110000	876630000	2656500000	1058400000	1598100000	19009	1033	18009	116318;116319;116320;116321;116322;116323;116324;116325;116326;116327;116328;116329;116330;116331;116332;116333;116334;116335	157349;157350;157351;157352;157353;157354;157355;157356;157357;157358;157359;157360;157361;157362;157363;157364;157365;157366;157367;157368;157369;157370;157371;157372;157373;157374;157375;157376;157377;157378;157379;157380;157381;157382;157383;157384;157385;157386;157387;157388;157389;157390;157391;157392;157393;157394;157395;157396	157386			48	
GHVHYLIK	1	Unmodified	965.54469	0.54468557	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				21.784	20.514	2	0.013874	16494	160511_QHF_FH_JSI9i_3	50.966	28.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19010	2578	18010	116336	157397	157397			1	
GHVITAISITHFK	1	Unmodified	1422.7983	0.79833407	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			4						14	6	4	3	5	57.434	49.757	2;3;4	7.2107E-26	26308	160513_QHF_FH_JSI9Kac_6	170.18	156.22			1.1155	1.0826	28.971	16	4	Median	1.1818	0.99178	33.795	5	2	Median	0.78109	0.93468	23.386	3	0	Median	1.4408	1.3871	10.777	3	0	Median	1.0457	1.1241	25.942	5	2	Median	1073100000	549590000	523480000	350960000	178180000	172780000	302320000	184800000	117520000	212840000	95994000	116850000	206950000	90612000	116340000	19011	4164	18011	116337;116338;116339;116340;116341;116342;116343;116344;116345;116346;116347;116348;116349;116350;116351;116352;116353;116354	157398;157399;157400;157401;157402;157403;157404;157405;157406;157407;157408;157409;157410;157411;157412;157413;157414;157415;157416;157417;157418;157419;157420;157421	157406			23	
GHVKFSK	2	Acetyl (K)	843.46029	0.46028724	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	15.404	7.6629	2	0.023956	5894	160513_QHF_FH_JSI11Kac_6	80.229	56.434			0.62091	0.68597	245.48	3	1	Median	NaN	NaN	NaN	0	0	Median	0.9973	1.14	NaN	1	0	Median	0.013205	0.012881	NaN	1	1	Median	0.62091	0.68597	NaN	1	0	Median	13869000	9756700	4112200	0	0	0	4883500	1965600	2917900	5761800	5721900	39895	3223500	2069200	1154400	19012	3828	18012	116355;116356;116357	157422;157423	157422	2953		2	
GHVQPIR	0	Unmodified	805.45587	0.45587056	2027	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	2	3	6.7144	3.4968	2	5.111E-05	2682	160513_QHF_FH_JSI11Kac_6	126.04	63.323			0.92895	0.9806	14.939	10	0	Median	1.4939	1.2433	16.759	2	0	Median	0.86916	1.0319	8.0135	3	0	Median	0.94456	0.90473	6.0361	2	0	Median	0.90273	0.97583	10.122	3	0	Median	7188700000	3595200000	3593500000	929680000	348410000	581280000	2112700000	1057500000	1055200000	1990600000	1135800000	854730000	2155800000	1053500000	1102200000	19013	2027	18013	116358;116359;116360;116361;116362;116363;116364;116365;116366;116367	157424;157425;157426;157427;157428;157429;157430;157431;157432;157433;157434;157435;157436;157437	157426			14	
GHVSELEADLAEQQHLR	0	Unmodified	1930.9497	0.94970235	118	O00291	HIP1	Huntingtin-interacting protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	47.835	47.595	3	2.6728E-06	40632	160511_QHF_FH_JSI12i_3	104.44	93.97			1.3419	1.2937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3419	1.2937	NaN	1	1	Median	32574000	10364000	22209000	0	0	0	0	0	0	0	0	0	32574000	10364000	22209000	19014	118	18014	116368	157438	157438			1	
GHVSLAAELSK	1	Unmodified	1110.6033	0.60332266	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.4	5.31		1	3						1	2		2	1	31.819	31.446	2	9.2713E-07	26961	160511_QHF_FH_JSI11i_3	119.53	94.606			1.6541	1.6712	116.67	3	2	Median	0.31434	0.26643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4781	2.322	NaN	1	1	Median	1.6541	1.6712	NaN	1	0	Median	266940000	87835000	179100000	9481600	8541600	939970	0	0	0	118440000	37181000	81261000	139020000	42112000	96903000	19015	1685	18015	116369;116370;116371;116372;116373	157439;157440;157441;157442;157443;157444;157445	157439			7	
GHVTQDAPIPGSPLYTIK	1	Unmodified	1892.9996	0.99961265	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.514	1	8	2							2	2	4	3	60.409	59.68	2;3	8.2422E-31	51807	160511_QHF_FH_JSI11i_2	185.87	168.06			0.88362	0.89526	44.834	11	1	Median	1.0396	0.89202	4.7729	2	0	Median	0.69967	0.86722	4.5	2	0	Median	0.80169	0.7832	69.069	4	1	Median	0.95645	1.0129	14.341	3	0	Median	1562200000	931970000	630270000	202500000	101680000	100820000	208050000	111530000	96520000	849580000	570850000	278730000	302100000	147900000	154200000	19016	2609	18016	116374;116375;116376;116377;116378;116379;116380;116381;116382;116383;116384	157446;157447;157448;157449;157450;157451;157452;157453;157454;157455;157456;157457;157458;157459;157460;157461	157453			16	
GHYEVTGSDDETGK	1	Unmodified	1493.627	0.62703081	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	11.878	11.457	2	7.1084E-13	9271	160511_QHF_FH_JSI10i_2	122.51	115.62			1.0169	0.95793	16.277	4	2	Median	1.0918	0.94023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89031	0.8633	17.348	2	1	Median	1.0141	1.1333	NaN	1	0	Median	59353000	34914000	24440000	11634000	6764600	4869200	0	0	0	32217000	19372000	12845000	15502000	8777300	6725000	19017	2286	18017	116385;116386;116387;116388;116389	157462;157463;157464;157465	157465			4	
GHYFCSVYGAR	0	Unmodified	1315.5768	0.57679033	4168	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			39.292	30.691	3	0.040442	17169	160513_QHF_FH_JSI10Kac_6	21.78	18.08			0.86432	0.98706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86432	0.98706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5124500	2855800	2268600	0	0	0	5124500	2855800	2268600	0	0	0	0	0	0	19018	4168	18018	116390	157466	157466			1	
GHYKGQQIGK	2	Acetyl (K)	1156.5989	0.59890598	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	16.018	8.2691	2;3	9.2235E-07	6114	160513_QHF_FH_JSI10Kac_6	118.18	96.805			0.25533	0.26148	190.56	6	1	Median	NaN	NaN	NaN	0	0	Median	1.3357	1.5768	1.5107	2	0	Median	0.20217	0.19584	0.18468	2	0	Median	0.051833	0.055606	259.63	2	1	Median	150480000	99132000	51353000	0	0	0	45119000	13771000	31348000	92476000	73468000	19008000	12891000	11893000	997210	19019	1949;5450	18019	116391;116392;116393;116394;116395;116396	157467;157468;157469;157470;157471;157472;157473;157474;157475;157476	157475	1957;1958		9	
GHYTEGAELVDSVLDVVR	0	Unmodified	1957.9745	0.97452012	2075;872;2477;2430	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	2.78		52	17						3	15	12	26	19	104.04	103.43	2;3	1.209E-34	43744	160513_QHF_FH_JSI9Kac_6	154.88	132.79			1.027	0.97535	29.791	53	24	Median	1.236	1.1313	26.656	11	6	Median	0.50331	0.61947	26.869	7	5	Median	1.0169	0.96943	18.106	21	8	Median	1.0561	1.0749	28.061	14	5	Median	2595100000	1290200000	1304900000	214270000	101490000	112780000	181900000	124720000	57184000	909820000	441510000	468310000	1289100000	622520000	666580000	19020	872;2075;2477;2430	18020	116397;116398;116399;116400;116401;116402;116403;116404;116405;116406;116407;116408;116409;116410;116411;116412;116413;116414;116415;116416;116417;116418;116419;116420;116421;116422;116423;116424;116425;116426;116427;116428;116429;116430;116431;116432;116433;116434;116435;116436;116437;116438;116439;116440;116441;116442;116443;116444;116445;116446;116447;116448;116449;116450;116451;116452;116453;116454;116455;116456;116457;116458;116459;116460;116461;116462;116463;116464;116465;116466;116467;116468	157477;157478;157479;157480;157481;157482;157483;157484;157485;157486;157487;157488;157489;157490;157491;157492;157493;157494;157495;157496;157497;157498;157499;157500;157501;157502;157503;157504;157505;157506;157507;157508;157509;157510;157511;157512;157513;157514;157515;157516;157517;157518;157519;157520;157521;157522;157523;157524;157525;157526;157527;157528;157529;157530;157531;157532;157533;157534;157535;157536;157537;157538;157539;157540;157541;157542;157543;157544;157545;157546;157547;157548;157549;157550;157551;157552;157553;157554	157543			75	
GHYTEGAELVDSVLDVVRK	1	Unmodified	2086.0695	0.069483134	2075;872;2477;2430	P07437;P68371;Q13885;Q9BVA1;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	2.19		19	120						4	29	57	40	17	99.668	99.323	3;4	4.663E-83	82608	160511_QHF_FH_JSI11i_3	248.18	241.91			0.94131	2.8608	22.013	128	26	Linear	1.0413	0.89361	26.556	28	6	Median	0.8046	2.0104	20.214	49	10	Linear	1.1469	1.0833	16.074	35	8	Median	1.0951	1.1061	16.546	16	2	Median	7286700000	3544900000	3741800000	1427900000	678720000	749170000	2313400000	1252800000	1060600000	2804400000	1257400000	1547000000	741050000	355980000	385060000	19021	872;2075;2477;2430	18021	116469;116470;116471;116472;116473;116474;116475;116476;116477;116478;116479;116480;116481;116482;116483;116484;116485;116486;116487;116488;116489;116490;116491;116492;116493;116494;116495;116496;116497;116498;116499;116500;116501;116502;116503;116504;116505;116506;116507;116508;116509;116510;116511;116512;116513;116514;116515;116516;116517;116518;116519;116520;116521;116522;116523;116524;116525;116526;116527;116528;116529;116530;116531;116532;116533;116534;116535;116536;116537;116538;116539;116540;116541;116542;116543;116544;116545;116546;116547;116548;116549;116550;116551;116552;116553;116554;116555;116556;116557;116558;116559;116560;116561;116562;116563;116564;116565;116566;116567;116568;116569;116570;116571;116572;116573;116574;116575;116576;116577;116578;116579;116580;116581;116582;116583;116584;116585;116586;116587;116588;116589;116590;116591;116592;116593;116594;116595;116596;116597;116598;116599;116600;116601;116602;116603;116604;116605;116606;116607;116608;116609;116610;116611	157555;157556;157557;157558;157559;157560;157561;157562;157563;157564;157565;157566;157567;157568;157569;157570;157571;157572;157573;157574;157575;157576;157577;157578;157579;157580;157581;157582;157583;157584;157585;157586;157587;157588;157589;157590;157591;157592;157593;157594;157595;157596;157597;157598;157599;157600;157601;157602;157603;157604;157605;157606;157607;157608;157609;157610;157611;157612;157613;157614;157615;157616;157617;157618;157619;157620;157621;157622;157623;157624;157625;157626;157627;157628;157629;157630;157631;157632;157633;157634;157635;157636;157637;157638;157639;157640;157641;157642;157643;157644;157645;157646;157647;157648;157649;157650;157651;157652;157653;157654;157655;157656;157657;157658;157659;157660;157661;157662;157663;157664;157665;157666;157667;157668;157669;157670;157671;157672;157673;157674;157675;157676;157677;157678;157679;157680;157681;157682;157683;157684;157685;157686;157687;157688;157689;157690;157691;157692;157693;157694;157695;157696;157697;157698;157699;157700;157701;157702;157703;157704;157705;157706;157707;157708;157709;157710;157711;157712;157713;157714;157715	157558			151	
GHYTIGK	1	Unmodified	774.40244	0.40243801	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.74		4	4						7	3	3	5	4	9.9768	6.0467	2	0.00065002	4371	160513_QHF_FH_JSI11Kac_6	114.54	22.955			0.85836	0.90621	43.437	15	2	Median	1.3163	1.0845	16.675	3	0	Plateau	0.85836	0.99946	7.5033	3	0	Median	0.76228	0.74552	71.06	5	1	Median	0.73219	0.77007	29.102	4	1	Median	35168000000	17274000000	17895000000	4828900000	2105100000	2723800000	7573100000	3599000000	3974100000	11432000000	5646700000	5785200000	11335000000	5922900000	5411600000	19022	2073;2074;4359	18022	116612;116613;116614;116615;116616;116617;116618;116619;116620;116621;116622;116623;116624;116625;116626	157716;157717;157718;157719;157720;157721;157722;157723;157724;157725;157726;157727;157728;157729;157730;157731;157732;157733;157734;157735;157736;157737;157738;157739;157740;157741;157742;157743;157744	157724			29	
GHYTIGKEIIDLVLDR	1	Acetyl (K)	1883.0153	0.015262719	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	1	0	0	1			By MS/MS		16	0									1			1		95.788	86.388	3	2.657E-07	48929	160513_QHF_FH_JSI11Kac_6	108.63	100.85			0.39506	0.37242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39506	0.37242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216150000	150040000	66111000	0	0	0	0	0	0	216150000	150040000	66111000	0	0	0	19023	2073;4359	18023	116627	157745	157745	2158		1	
GHYYVPLLR	0	Unmodified	1116.608	0.60801411	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			53.399	51.829	3	0.0018967	43229	160511_QHF_FH_JSI10i_3	52.716	34.897			1.09	1.0596	16.113	2	0	Median	1.1389	0.94553	NaN	1	0	Median	1.0433	1.1875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36370000	18491000	17880000	22605000	11784000	10822000	13765000	6707300	7058100	0	0	0	0	0	0	19024	3376	18024	116628;116629	157746;157747	157746			2	
GIAADGANALLPANR	0	Unmodified	1422.7579	0.75792582	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			3	2	1	2	55.839	53.44	2	1.3193E-55	46353	160511_QHF_FH_JSI11i_2	194.17	139.1			1.2892	1.3458	23.815	7	6	Median	1.6569	1.4548	25.467	3	3	Plateau	0.97331	1.1884	17.594	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4561	1.6456	21.017	2	2	Median	235400000	107020000	128380000	99609000	41814000	57796000	101170000	49066000	52099000	0	0	0	34624000	16137000	18487000	19025	4753	18025	116630;116631;116632;116633;116634;116635;116636;116637	157748;157749;157750;157751;157752;157753;157754;157755;157756	157753			9	
GIAAQPLYAGYCNHENM	0	Unmodified	1907.8295	0.82945256	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.902	56.978	2	3.2127E-07	49379	160511_QHF_FH_JSI11i_2	122.51	107.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19026	874	18026	116638;116639	157757;157758	157758			2	
GIADVPEWFK	1	Unmodified	1160.5866	0.58660996	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	80.819	79.997	2	0.0063651	71248	160511_QHF_FH_JSI10i_2	78.334	54.18			0.83564	0.83269	2.2638	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7057	0.87126	NaN	1	0	Median	0.83564	0.83269	NaN	1	0	Median	0.78802	0.85184	NaN	1	0	Median	115380000	60317000	55066000	0	0	0	28996000	16578000	12418000	53903000	28007000	25896000	32484000	15733000	16751000	19027	3335	18027	116640;116641;116642	157759;157760	157760			0	
GIAFAFNAK	1	Unmodified	937.50215	0.50215205	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	66.225	57.104	2	0.00014278	50221	160511_QHF_FH_JSI11i_3	94.262	70.29			0.80454	0.77251	26.278	4	0	Median	0.93431	0.81075	NaN	1	0	Median	0.57593	0.6602	NaN	1	0	Median	1.2311	1.2063	NaN	1	0	Median	0.6928	0.73608	NaN	1	0	Median	47880000	26092000	21788000	10297000	5386900	4910500	15635000	10053000	5581800	15180000	6634100	8546100	6767100	4017200	2749900	19028	5327	18028	116643;116644;116645;116646;116647;116648	157761;157762;157763;157764;157765;157766	157761			5	
GIAFPTSISVNNCVCHFSPLK	1	Unmodified	2347.1453	0.14530739	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	88.597	88.04	3	2.1308E-37	78826	160511_QHF_FH_JSI11i_3	195.78	172.34			0.86424	0.82591	23.69	6	1	Median	0.77086	0.64319	26.254	2	1	Median	0.71824	0.8657	11.436	2	0	Median	0.93061	0.85432	NaN	1	0	Median	1.0536	1.0759	NaN	1	0	Median	1057000000	562970000	494000000	181350000	92215000	89134000	311470000	174240000	137230000	355120000	187010000	168110000	209030000	109500000	99536000	19029	5475	18029	116649;116650;116651;116652;116653;116654	157767;157768;157769;157770;157771;157772;157773;157774;157775;157776;157777;157778;157779;157780;157781;157782	157770			16	
GIAHPISFPSFAK	1	Unmodified	1370.7347	0.73467118	5624	Q9Y4E5	ZNF451	Zinc finger protein 451	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	2	1	1	65.189	64.143	2;3	1.5985E-06	55358	160511_QHF_FH_JSI12i_3	125.54	121.83			0.8593	0.78713	13.966	5	3	Median	0.91663	0.73901	8.9222	2	2	Median	0.79868	0.9219	NaN	1	1	Median	0.71351	0.67715	NaN	1	0	Median	0.8593	0.88774	NaN	1	0	Median	354500000	194500000	160000000	113340000	60735000	52603000	67003000	34960000	32043000	60891000	33779000	27112000	113270000	65028000	48242000	19030	5624	18030	116655;116656;116657;116658;116659;116660;116661	157783;157784;157785;157786;157787;157788;157789;157790;157791	157791			9	
GIALIFNHER	0	Unmodified	1168.6353	0.63529149	1855	P55212	CASP6	Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		58.238	49.782	2;3	0.00078771	27435	160513_QHF_FH_JSI10Kac_6	86.67	61.111			0.68111	0.8132	1.9249	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68111	0.8132	1.9249	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48058000	27936000	20122000	0	0	0	48058000	27936000	20122000	0	0	0	0	0	0	19031	1855	18031	116662;116663;116664	157792;157793;157794	157794			3	
GIALQLK	1	Unmodified	741.47487	0.47487467	5785				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.82	2	4	2					3		2	3	4	2	46.09	42.753	2	0.0063181	38392	160511_QHF_FH_JSI11i_1	91.584	28.87	+		0.95253	0.92888	9.1409	11	0	Median	1.2557	1.0662	17.266	2	0	Median	0.77854	0.93434	2.4151	3	0	Plateau	0.96078	0.92882	3.5325	4	0	Median	0.91962	0.97443	13.742	2	0	Median	994240000	495030000	499210000	117570000	58448000	59123000	176610000	99571000	77039000	361030000	166880000	194160000	339020000	170130000	168900000	19032	5785	18032	116665;116666;116667;116668;116669;116670;116671;116672;116673;116674;116675	157795;157796;157797;157798;157799;157800;157801;157802;157803;157804;157805;157806;157807;157808;157809;157810	157796			16	
GIALWGGEK	1	Unmodified	929.49707	0.49706667	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.52	6.87	3	5	3					3	7	4	6	5	6	55.871	50.869	2	1.2379E-05	43838	160511_QHF_FH_JSI11i_2	103.56	64.021			1.0688	1.119	29.628	17	8	Median	1.2969	1.0828	22.902	4	3	Median	0.94599	1.1477	45.849	5	2	Median	1.1753	1.0835	5.8284	3	1	Plateau	0.92538	1.0256	30.051	5	2	Median	2621500000	1163700000	1457800000	255330000	108200000	147130000	550870000	264060000	286810000	943270000	379060000	564210000	871990000	412340000	459650000	19033	1867	18033	116676;116677;116678;116679;116680;116681;116682;116683;116684;116685;116686;116687;116688;116689;116690;116691;116692;116693;116694;116695;116696	157811;157812;157813;157814;157815;157816;157817;157818;157819;157820;157821;157822;157823;157824;157825;157826;157827;157828;157829;157830;157831;157832;157833;157834;157835;157836	157824			26	
GIALWGGEKFK	2	Acetyl (K)	1246.671	0.67100829	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.516	70.202	2	0.0001104	38515	160513_QHF_FH_JSI11Kac_6	96.89	68.491			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18444000	18444000	0	0	0	0	0	0	0	18444000	18444000	0	0	0	0	19034	1867	18034	116697	157837	157837	1883		1	
GIAPGDER	0	Unmodified	813.39808	0.39808091	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	11.37	6.526	2	0.0010531	7081	160511_QHF_FH_JSI10i_1	94.662	62.192			1.0311	1.0763	6.363	10	0	Median	1.3209	1.0773	NaN	1	0	Median	0.89826	1.0633	4.4231	3	0	Median	1.1233	1.0753	8.1627	3	0	Median	1.0258	1.121	9.1948	3	0	Median	2817500000	1394800000	1422700000	682870000	306820000	376050000	739080000	400970000	338110000	742260000	354270000	388000000	653290000	332710000	320580000	19035	2094	18035	116698;116699;116700;116701;116702;116703;116704;116705;116706;116707	157838;157839;157840;157841;157842;157843;157844;157845;157846;157847;157848;157849;157850;157851;157852;157853;157854	157845			17	
GIAQMLEK	1	Unmodified	888.47389	0.47388839	2068	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	42.774	41.933	2	2.5428E-06	36679	160511_QHF_FH_JSI11i_3	143.01	83.805			1.0456	0.98434	27.586	9	1	Plateau	0.77736	0.65831	47.166	2	1	Median	0.91583	1.0936	8.3356	2	0	Median	1.1065	1.072	22.311	3	0	Plateau	0.90778	0.94709	5.4556	2	0	Median	2677500000	1310700000	1366800000	342290000	184970000	157320000	453120000	268120000	185000000	780030000	348790000	431250000	1102100000	508830000	593270000	19036	2068	18036	116708;116709;116710;116711;116712;116713;116714;116715;116716	157855;157856;157857;157858;157859;157860;157861;157862;157863;157864;157865;157866;157867;157868;157869;157870;157871;157872;157873	157857			18	
GIASTSDPPTANIKPTPVVSTPSK	2	Unmodified	2364.2537	0.25365509	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.799	5	4	3							3	3	3	3	52.364	51.566	3	8.2866E-24	45761	160511_QHF_FH_JSI11i_3	143.31	136.34			0.98837	0.95206	12.873	12	3	Median	1.0083	0.84026	13.702	3	2	Median	0.77644	0.9301	2.1294	3	0	Median	1.0299	0.94653	12.039	3	0	Plateau	0.98862	1.0129	10.204	3	1	Median	2082200000	1083500000	998700000	471200000	239860000	231350000	484980000	285930000	199040000	690440000	335090000	355350000	435620000	222650000	212970000	19037	1016	18037	116717;116718;116719;116720;116721;116722;116723;116724;116725;116726;116727;116728	157874;157875;157876;157877;157878;157879;157880;157881;157882;157883;157884;157885;157886;157887;157888;157889;157890;157891;157892;157893;157894;157895;157896;157897;157898;157899	157875			26	
GIAWWTDK	1	Unmodified	975.48142	0.48141661	5026	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	61.028	60.43	2	0.0033437	52078	160511_QHF_FH_JSI12i_3	73.26	46.658			1.0123	1.0051	44.322	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3229	1.5072	NaN	1	0	Median	0.67646	0.62182	NaN	1	0	Median	1.0123	1.0051	NaN	1	0	Median	146050000	74425000	71626000	0	0	0	33957000	13190000	20767000	35187000	17436000	17751000	76907000	43800000	33107000	19038	5026	18038	116729;116730;116731	157900	157900			1	
GIAYIEFK	1	Unmodified	939.50657	0.50656873	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.37	3	4	4			2	3	5	4	5	7	6	7	63.015	56.715	2	5.1862E-07	30839	160513_QHF_FH_JSI9Kac_5	141.78	91.175			0.99041	1.0002	20.974	25	1	Median	1.1447	0.98148	4.3466	5	0	Median	0.84646	1.0028	14.616	7	0	Median	1.0368	1.0086	9.7483	6	0	Median	0.99041	1.0617	37.305	7	1	Median	14192000000	6726000000	7466100000	2437100000	1019400000	1417800000	3414700000	1913400000	1501300000	4308400000	2014100000	2294400000	4031900000	1779100000	2252700000	19039	1154	18039	116732;116733;116734;116735;116736;116737;116738;116739;116740;116741;116742;116743;116744;116745;116746;116747;116748;116749;116750;116751;116752;116753;116754;116755;116756	157901;157902;157903;157904;157905;157906;157907;157908;157909;157910;157911;157912;157913;157914;157915;157916;157917;157918;157919;157920;157921;157922;157923;157924;157925;157926;157927;157928;157929;157930;157931;157932;157933;157934;157935;157936;157937;157938;157939;157940;157941;157942;157943;157944;157945;157946;157947;157948;157949;157950;157951;157952;157953;157954;157955;157956;157957;157958;157959	157912			59	
GIAYVEFVDVSSVPLAIGLTGQR	0	Unmodified	2390.2846	0.28456129	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	102.09	101.98	3	4.6816E-08	89782	160511_QHF_FH_JSI11i_2	74.364	70.975			1.1999	1.2022	18.098	4	0	Median	1.1764	1.0008	NaN	1	0	Median	0.86074	1.0472	NaN	1	0	Median	1.3897	1.4151	NaN	1	0	Median	1.2239	1.3803	NaN	1	0	Median	598670000	282000000	316670000	144520000	65570000	78948000	93432000	51978000	41454000	230020000	109250000	120760000	130700000	55199000	75502000	19040	2538	18040	116757;116758;116759;116760	157960	157960			1	
GICERPRQQEIHKSFR	1	Unmodified	2040.0436	0.04355993	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.218	74.975	4	0.059197	39946	160513_QHF_FH_JSI12Kac_6	16.119	1.6468			0.87726	0.88114	34.664	4	0	Median	1.0795	0.9073	NaN	1	0	Median	0.71292	0.85573	NaN	1	0	Median	1.2362	1.1767	NaN	1	0	Median	0.4952	0.51391	NaN	1	0	Median	1970200000	871080000	1099100000	1012200000	464860000	547370000	95641000	46617000	49024000	745030000	291320000	453710000	117250000	68284000	48970000	19041	2948	18041	116761;116762;116763;116764	157961	157961			1	
GICIHTLTK	1	Unmodified	1041.5641	0.56410038	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	3	3	3	31.521	30.885	2;3	6.0394E-06	26632	160511_QHF_FH_JSI11i_3	93.111	86.379			1.0283	0.97609	26.384	9	4	Median	1.0672	0.88547	7.9844	2	0	Median	0.75594	0.86321	33.079	2	1	Median	1.0283	0.97609	20.443	3	2	Median	1.4425	1.4476	10.706	2	1	Median	641300000	277000000	364290000	55234000	23889000	31345000	40432000	24742000	15690000	279800000	134550000	145250000	265830000	93826000	172010000	19042	4568	18042	116765;116766;116767;116768;116769;116770;116771;116772;116773;116774;116775	157962;157963;157964;157965;157966;157967;157968;157969;157970;157971;157972;157973;157974;157975	157963			14	
GIDAEPK	1	Unmodified	728.37047	0.37046918	5784				yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	5									1	2	1	1	9.3777	9.0459	2	0.021535	6849	160511_QHF_FH_JSI10i_1	56.51	32.538	+		0.81155	0.9421	6.0612	4	0	Linear	1.2832	1.0622	NaN	1	0	Median	0.77434	0.93434	0	2	0	Median	1.016	0.98314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2509500000	1375900000	1133600000	530500000	268740000	261760000	1335000000	780270000	554690000	644040000	326870000	317170000	0	0	0	19043	5784	18043	116776;116777;116778;116779;116780	157976;157977	157977			2	
GIDASDYQTVQIFYPSK	1	Unmodified	1930.9313	0.93125832	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										3	1	3	79.582	79.27	2;3	1.7558E-28	72131	160511_QHF_FH_JSI12i_1	225.55	210.17			1.3819	1.4323	32.365	6	5	Median	NaN	NaN	NaN	0	0	Median	0.69792	0.82336	38.719	3	3	Plateau	1.3749	1.2964	NaN	1	1	Median	1.6189	1.6917	7.5429	2	1	Median	183290000	95135000	88152000	0	0	0	105420000	61453000	43962000	23473000	10516000	12957000	54399000	23166000	31233000	19044	1615	18044	116781;116782;116783;116784;116785;116786;116787	157978;157979;157980;157981;157982;157983;157984;157985	157980			8	
GIDEGPEGLK	1	Unmodified	1013.5029	0.50293991	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.127	28.564	2	0.023279	25581	160511_QHF_FH_JSI12i_1	60.828	45.196			0.66968	0.70125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66968	0.70125	NaN	1	0	Median	76821000	39187000	37634000	0	0	0	0	0	0	0	0	0	76821000	39187000	37634000	19045	3513	18045	116788	157986	157986			0	
GIDFFEFLCQLILK	1	Unmodified	1741.9113	0.91131492	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.88	96.415	2	1.2345E-71	58088	160513_QHF_FH_JSI10Kac_6	258.92	219.77			1.005	1.002	47.099	2	2	Median	0.85983	0.71821	NaN	1	1	Median	1.1747	1.398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79789000	32499000	47289000	6962100	3868900	3093200	72827000	28631000	44196000	0	0	0	0	0	0	19046	4915	18046	116789;116790	157987;157988	157988			2	
GIDFHKQQPLFVSGGDDYK	2	Acetyl (K)	2192.0538	0.05383307	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.011	67.402	3	0.0062418	35826	160513_QHF_FH_JSI11Kac_5	57.989	45.435			0.248	0.23664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.248	0.23664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6748400	5583600	1164800	0	0	0	0	0	0	6748400	5583600	1164800	0	0	0	19047	1805	18047	116791	157989	157989	1822		0	
GIDGVSVTSFSAR	0	Unmodified	1294.6517	0.65172941	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.7	0.943							2		1		1	2		67.466	56.423	2	0.00029411	31334	160513_QHF_FH_JSI11Kac_4	94.297	69.953			0.88888	0.88536	6.8804	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88888	0.88536	6.8804	2	2	Median	NaN	NaN	NaN	0	0	Median	8610000	4383000	4227000	0	0	0	0	0	0	8610000	4383000	4227000	0	0	0	19048	4608	18048	116792;116793;116794	157990;157991;157992	157990			3	
GIDIHGVPYVINVTLPDEK	1	Unmodified	2078.1048	0.10480601	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	94.529	94.319	3	1.0172E-06	81577	160511_QHF_FH_JSI12i_2	96.143	86.613			0.85193	0.95082	18.3	7	4	Median	1.1207	0.95082	NaN	1	1	Median	0.83901	1.0386	NaN	1	0	Median	0.8358	0.80223	29.425	2	1	Median	0.85193	0.86191	17.966	3	2	Median	543040000	283920000	259110000	60861000	29623000	31238000	112490000	65167000	47327000	156290000	81946000	74348000	213390000	107190000	106200000	19049	3828	18049	116795;116796;116797;116798;116799;116800;116801	157993;157994;157995;157996;157997;157998;157999;158000;158001;158002;158003;158004;158005;158006;158007;158008;158009;158010	157997			18	
GIDIQDVSMVVNYDMAK	1	Unmodified	1896.8961	0.89613514	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	98.201	98.082	2;3	2.7911E-10	88817	160511_QHF_FH_JSI10i_1	154.47	131.24			1.0134	1.0431	10.944	6	3	Median	NaN	NaN	NaN	0	0	Median	0.92736	1.0666	7.01	2	2	Median	1.0815	1.0431	3.4925	2	0	Median	1.1049	1.1303	21.651	2	1	Median	144390000	74647000	69747000	0	0	0	61262000	36830000	24432000	35242000	15582000	19660000	47890000	22235000	25655000	19050	4449	18050	116802;116803;116804;116805;116806;116807	158011;158012;158013;158014;158015;158016	158016			6	
GIDLTQVK	1	Unmodified	872.49673	0.49673232	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	39.621	38.994	2	0.0028778	34494	160511_QHF_FH_JSI9i_1	76.774	30.758			1.3756	1.439	68.862	4	3	Median	6.7164	5.5203	NaN	1	0	Median	1.2216	1.4436	NaN	1	1	Median	1.4616	1.4344	NaN	1	1	Median	1.2947	1.3147	NaN	1	1	Median	614460000	279510000	334950000	54379000	8138200	46241000	192130000	95412000	96721000	190560000	84048000	106510000	177390000	91912000	85482000	19051	970	18051	116808;116809;116810;116811;116812	158017;158018;158019;158020;158021	158021			5	
GIDLTQVKGTGPDGR	1	Acetyl (K)	1554.8002	0.80018457	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	66.249	57.025	2	0.053682	29456	160513_QHF_FH_JSI12Kac_3	57.019	47.066			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19052	970	18052	116813	158022	158022			1	
GIDPFSLDALSK	1	Unmodified	1261.6554	0.65541781	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.93	4	2	2				1			3	3	1	2	85.828	84.022	2	8.6977E-11	77764	160511_QHF_FH_JSI12i_1	165.11	21.501			0.92076	0.95425	10.49	9	0	Median	1.1029	0.89811	4.6319	3	0	Median	0.81312	0.94097	17.16	3	0	Median	0.99935	0.98235	NaN	1	0	Median	0.89706	0.98264	0.5286	2	0	Median	6092400000	3119800000	2972600000	1698900000	790220000	908630000	1205300000	653780000	551490000	1429400000	749080000	680290000	1758900000	926700000	832200000	19053	1494	18053	116814;116815;116816;116817;116818;116819;116820;116821;116822	158023;158024;158025;158026;158027;158028;158029;158030;158031;158032;158033;158034;158035;158036;158037;158038;158039;158040;158041	158029			19	
GIDPFSLDSLAK	1	Unmodified	1261.6554	0.65541781	3835	Q92526	CCT6B	T-complex protein 1 subunit zeta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.53	2	2					2	3		2	2	3	2	85.516	79.439	2	1.427E-05	77853	160511_QHF_FH_JSI11i_1	131.28	6.0673			1.0309	0.98235	12.145	9	0	Median	1.1915	0.9786	16.429	2	0	Median	0.75727	0.91064	8.7717	2	0	Median	0.99935	0.98235	13.884	3	0	Median	1.0394	1.1178	0.11376	2	0	Median	3794800000	2024000000	1770800000	993970000	502170000	491800000	604140000	371370000	232770000	2187000000	1145500000	1041600000	9652700	4989900	4662800	19054	3835	18054	116823;116824;116825;116826;116827;116828;116829;116830;116831	158042;158043;158044;158045;158046;158047;158048;158049;158050;158051;158052	158043			10	
GIDRYNPENLATLER	0	Unmodified	1759.8853	0.88531118	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			57.343	55.795	2;3	8.0834E-07	46647	160511_QHF_FH_JSI10i_3	130.21	118.3			1.1137	1.0799	12.885	4	1	Median	1.5065	1.2285	17.652	2	1	Median	0.93126	1.0718	0.49312	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	557000000	270250000	286750000	146690000	55668000	91027000	410300000	214580000	195720000	0	0	0	0	0	0	19055	5247	18055	116832;116833;116834;116835	158053;158054;158055;158056;158057	158054			5	
GIDSEGHAANFVETEQIVHYNGSK	1	Unmodified	2601.2096	0.20955844	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	56.834	56.452	4	7.9801E-13	48497	160511_QHF_FH_JSI12i_3	99.387	95.925			0.91963	0.91151	3.8702	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75673	0.91151	NaN	1	1	Median	0.91949	0.86823	NaN	1	0	Median	0.91963	0.93723	NaN	1	0	Median	316390000	168840000	147550000	0	0	0	42408000	22086000	20322000	132240000	67695000	64545000	141750000	79060000	62686000	19056	4991	18056	116836;116837;116838	158058;158059;158060;158061	158061			4	
GIDSSYR	0	Unmodified	796.37153	0.37153181	4005	Q96CB8	INTS12	Integrator complex subunit 12	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.43	0.495		4	3							2	1	2	2	46.488	45.664	2	0.021535	40088	160511_QHF_FH_JSI11i_3	56.51	8.2684			0.90648	0.89299	10.997	7	0	Median	1.1683	0.96971	16.311	2	0	Median	0.71973	0.89299	NaN	1	0	Median	0.98629	0.971	6.7503	2	0	Median	0.75408	0.81542	2.251	2	0	Median	1418900000	655540000	763340000	832430000	344320000	488110000	68918000	36239000	32679000	298820000	158250000	140570000	218710000	116730000	101980000	19057	4005	18057	116839;116840;116841;116842;116843;116844;116845	158062;158063;158064;158065	158062			4	
GIDVQQVSLVINYDLPTNR	0	Unmodified	2143.1273	0.12733236	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	9	6								4	4	3	4	98.649	98.513	2;3	4.8192E-68	86402	160511_QHF_FH_JSI11i_2	238.47	211.51			0.93523	0.96271	14.391	14	6	Median	1.273	1.0759	9.9218	4	1	Median	0.70568	0.82548	5.6575	4	2	Median	0.97927	1.012	6.9365	3	2	Plateau	0.89317	0.9324	7.2075	3	1	Median	747190000	393090000	354110000	120200000	45360000	74843000	361010000	210590000	150420000	112380000	57617000	54761000	153600000	79520000	74082000	19058	1917;2519	18058	116846;116847;116848;116849;116850;116851;116852;116853;116854;116855;116856;116857;116858;116859;116860	158066;158067;158068;158069;158070;158071;158072;158073;158074;158075;158076;158077;158078;158079;158080;158081;158082;158083;158084;158085;158086;158087;158088;158089;158090;158091;158092;158093	158089			28	
GIDYDKLIVR	1	Acetyl (K)	1232.6765	0.6764876	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		77.467	66.872	2	0.0021197	35589	160513_QHF_FH_JSI11Kac_5	81.338	57.183			1.7224	1.8567	164.01	2	0	Median	NaN	NaN	NaN	0	0	Median	5.051	5.9212	NaN	1	0	Median	0.58731	0.58217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9268700	3133800	6134900	0	0	0	5529100	902760	4626400	3739600	2231100	1508500	0	0	0	19059	1226	18059	116861;116862	158094	158094	1107		1	
GIEAVGGK	1	Unmodified	729.4021	0.40210366	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7	6.09	2	1	1				3			2	4	1		17.394	11.334	2	0.0008738	10104	160511_QHF_FH_JSI9i_1	89.55	44.939			0.77507	0.7715	49.035	3	1	Median	NaN	NaN	NaN	0	0	Median	0.60052	0.7061	68.967	2	1	Median	0.77507	0.7715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41276000	25224000	16052000	0	0	0	20585000	14148000	6436700	20691000	11075000	9615700	0	0	0	19060	1216	18060	116863;116864;116865;116866;116867;116868;116869	158095;158096;158097;158098;158099;158100;158101	158100			7	
GIEDNPMVVPLCNR	0	Unmodified	1612.7701	0.77014677	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	65.665	65.08	2;3	2.8353E-98	59147	160511_QHF_FH_JSI11i_1	310.53	290.77			1.1851	1.2499	26.393	6	1	Median	1.4594	1.2114	NaN	1	0	Median	1.1116	1.2896	NaN	1	0	Median	0.81315	0.79617	11.544	2	0	Median	1.2907	1.3608	3.2529	2	1	Median	761620000	371130000	390490000	94849000	40505000	54343000	150650000	76711000	73937000	257140000	136620000	120520000	258980000	117290000	141690000	19061	1283	18061	116870;116871;116872;116873;116874;116875	158102;158103;158104;158105;158106	158104			4	
GIEEEEILPGFILCDPNNLCHSGR	0	Unmodified	2768.2898	0.28979937	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	98.768	98.583	3	2.9119E-05	86528	160511_QHF_FH_JSI11i_2	51.834	48.24			1.1734	1.1844	4.5229	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1659	1.1471	NaN	1	1	Median	1.1809	1.2229	NaN	1	1	Median	22562000	11950000	10612000	0	0	0	4593900	4593900	0	12076000	3885400	8190800	5892200	3470800	2421400	19062	1069	18062	116876;116877;116878;116879	158107;158108;158109;158110;158111	158110			5	
GIEESLRK	1	Unmodified	930.51345	0.51344502	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	15.375	14.937	2;3	0.00016345	11681	160511_QHF_FH_JSI12i_3	92.439	21.52			0.97534	0.90606	15.863	11	1	Median	0.98037	0.83856	1.4022	2	0	Median	0.72163	0.87789	4.4668	2	0	Median	1.1034	1.094	25.793	3	1	Median	0.94535	1.0194	14.075	4	0	Median	3146300000	1660500000	1485800000	349890000	183220000	166670000	496420000	258320000	238100000	1092200000	540110000	552090000	1207800000	678840000	528970000	19063	2770	18063	116880;116881;116882;116883;116884;116885;116886;116887;116888;116889;116890	158112;158113;158114;158115;158116;158117;158118;158119;158120;158121;158122;158123;158124;158125	158124			14	
GIEFDWK	1	Unmodified	893.42832	0.42831841	4476	Q9BVK8	TMEM147	Transmembrane protein 147	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61.147	60.635	2	0.0095767	52128	160511_QHF_FH_JSI12i_2	68.422	56.517			0.61968	0.61393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61968	0.61393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46625000	31457000	15168000	0	0	0	0	0	0	46625000	31457000	15168000	0	0	0	19064	4476	18064	116891;116892	158126;158127	158126			2	
GIEGTVPYVTTDYNFK	1	Unmodified	1802.8727	0.87268081	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	74.94	74.449	2	1.0673E-07	67800	160511_QHF_FH_JSI12i_1	138.24	118.03			0.98396	1.0173	12.406	8	8	Median	1.0763	0.8826	14.803	2	2	Median	0.93808	1.1276	3.6542	2	2	Median	1.0997	1.0322	5.3439	2	2	Median	0.90033	0.95394	12.377	2	2	Median	458950000	221090000	237860000	87804000	41477000	46327000	130140000	65106000	65035000	141010000	62995000	78012000	100000000	51511000	48489000	19065	2930	18065	116893;116894;116895;116896;116897;116898;116899;116900	158128;158129;158130;158131;158132;158133;158134;158135;158136;158137	158131			10	
GIEGVQVIPLIPGAGEIIIADNIIK	1	Unmodified	2541.4782	0.47817572	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.83	102.73	3	2.5929E-13	88658	160511_QHF_FH_JSI12i_2	104.33	100.93			0.95682	0.96151	18.563	4	1	Median	1.103	0.94194	NaN	1	0	Median	0.56355	0.69849	NaN	1	1	Median	0.95826	0.98149	NaN	1	0	Median	0.95539	1.0709	NaN	1	0	Median	370010000	196160000	173850000	66356000	31148000	35208000	48605000	30923000	17682000	137870000	72541000	65332000	117170000	61547000	55625000	19066	1304	18066	116901;116902;116903;116904	158138;158139;158140;158141;158142;158143	158139			6	
GIEILLEK	1	Unmodified	913.54843	0.54843354	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.439	66.14	2	0.0054523	56945	160511_QHF_FH_JSI12i_2	73.665	21.262			0.62139	0.67464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62139	0.67464	NaN	1	1	Median	8150100	5545500	2604600	0	0	0	0	0	0	0	0	0	8150100	5545500	2604600	19067	2666	18067	116905	158144	158144			1	
GIEILTDMSRPVELSDR	0	Unmodified	1929.983	0.98297631	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		81.201	80.581	3	5.8041E-06	70862	160511_QHF_FH_JSI11i_2	96.303	70.713			0.94059	0.93092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94059	0.93092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46686000	24843000	21844000	0	0	0	0	0	0	46686000	24843000	21844000	0	0	0	19068	1722	18068	116906	158145;158146	158146			2	
GIEILTDMSRPVELSDRETLLNSATTSLNSK	1	Unmodified	3389.7348	0.7348137	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		4	8							6	5	1		98.063	97.844	4	1.4199E-22	79665	160511_QHF_FH_JSI9i_3	105.02	103.14			0.95901	0.84835	15.1	12	4	Median	1.0638	0.89684	16.391	6	2	Median	0.69278	0.80351	11.908	5	2	Median	1.1153	1.0243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	860120000	421310000	438810000	497660000	224900000	272760000	269000000	155540000	113460000	93453000	40868000	52585000	0	0	0	19069	1722	18069	116907;116908;116909;116910;116911;116912;116913;116914;116915;116916;116917;116918	158147;158148;158149;158150;158151;158152;158153;158154;158155;158156;158157;158158;158159;158160;158161;158162;158163;158164;158165;158166	158156			20	
GIEILTDMSRPVELSDRETLLNSATTSLNSK	1	Oxidation (M)	3405.7297	0.72972832	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	2	By MS/MS				3	0			1							1				86.326	85.102	4	0.00062401	69887	160511_QHF_FH_JSI9i_3	36.483	31.27			1.5295	1.2492	NaN	1	0	Median	1.5295	1.2492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55872000	20871000	35001000	55872000	20871000	35001000	0	0	0	0	0	0	0	0	0	19070	1722	18069	116919	158167	158167		1406	1	
GIEKNLGIGK	2	Acetyl (K)	1069.6132	0.61315906	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	56	45.276	2	4.3411E-06	25048	160513_QHF_FH_JSI10Kac_4	119.68	74.312			0.6497	0.73117	16.505	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6497	0.7748	NaN	1	0	Median	0.57093	0.56804	NaN	1	0	Median	0.68175	0.73117	NaN	1	0	Median	61068000	37144000	23924000	0	0	0	22711000	12609000	10102000	20826000	14807000	6018600	17531000	9727900	7802900	19071	1504	18070	116920;116921;116922;116923	158168;158169;158170;158171;158172;158173;158174	158168	1526;1527		7	
GIEKPPFELPDFIK	2	Unmodified	1628.8814	0.881395	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	91.868	91.711	3	4.7748E-05	81618	160511_QHF_FH_JSI11i_3	105.46	76.447			1.0891	1.0977	28.447	3	2	Median	NaN	NaN	NaN	0	0	Median	0.58865	0.69507	NaN	1	1	Median	1.2258	1.1715	NaN	1	0	Median	1.0891	1.0977	NaN	1	1	Median	143190000	74156000	69029000	0	0	0	17101000	11379000	5721800	42465000	22564000	19901000	83620000	40213000	43407000	19072	2412	18071	116924;116925;116926;116927	158175;158176;158177;158178;158179	158175			5	
GIEKPPFELPDFIKR	2	Unmodified	1784.9825	0.98250603	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		81.388	80.747	4	0.003264	71892	160511_QHF_FH_JSI11i_3	56.339	46.058			0.56419	0.59772	14.181	2	2	Median	NaN	NaN	NaN	0	0	Median	0.54963	0.66077	NaN	1	1	Median	0.57913	0.5407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43356000	28708000	14648000	0	0	0	7764300	5183400	2580900	35592000	23525000	12067000	0	0	0	19073	2412	18072	116928;116929	158180;158181	158180			2	
GIELGDIQSSIESIK	1	Unmodified	1587.8356	0.83556702	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	88.784	88.43	2	6.4475E-12	80597	160511_QHF_FH_JSI11i_1	112.51	88.163			0.92151	0.98744	24.041	4	3	Median	NaN	NaN	NaN	0	0	Median	0.86903	1.0053	NaN	1	0	Median	1.2885	1.2542	NaN	1	1	Median	0.82375	0.82399	23.053	2	2	Median	85557000	45149000	40408000	0	0	0	38887000	23943000	14944000	14528000	3112900	11415000	32141000	18093000	14049000	19074	4560	18073	116930;116931;116932;116933;116934	158182;158183;158184;158185;158186	158183			5	
GIEMSEVR	0	Oxidation (M)	935.43823	0.43823117	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	1	0		By matching	By matching	By MS/MS	1.33	0.471	2	1									1	1	1	26.83	26.279	2	0.0097133	23445	160511_QHF_FH_JSI12i_1	62.546	47.771			0.91265	0.91617	37.062	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4168	1.7371	NaN	1	0	Median	1.0438	1.0124	NaN	1	0	Median	0.81686	0.85423	NaN	1	0	Median	185520000	80491000	105030000	0	0	0	34905000	12997000	21908000	74076000	34368000	39708000	76539000	33126000	43413000	19075	935	18074	116935;116936;116937	158187;158188	158187		508	2	
GIEMSEVR	0	Unmodified	919.44332	0.44331654	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.8	0.4	1	4								1	1	2	1	27.046	26.29	2	0.020956	23117	160511_QHF_FH_JSI10i_2	45.335	7.7769			1.1431	1.1827	14.512	5	0	Median	1.5843	1.3609	NaN	1	0	Median	0.97897	1.1827	NaN	1	0	Median	1.3652	1.3667	22.623	2	0	Median	1.0322	1.1349	NaN	1	0	Median	1019700000	476620000	543060000	179800000	74928000	104870000	157650000	83502000	74143000	435690000	192050000	243650000	246530000	126140000	120390000	19076	935	18074	116938;116939;116940;116941;116942	158189	158189			1	
GIEPTGNMVK	1	Oxidation (M)	1060.5223	0.52229515	512	O75369	FLNB	Filamin-B	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		28.549	28.343	2	0.0019603	25190	160511_QHF_FH_JSI11i_1	66.692	46.172			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55370000	33389000	21981000	0	0	0	0	0	0	55370000	33389000	21981000	0	0	0	19077	512	18075	116943	158190	158190		187	1	
GIEPTGNMVK	1	Unmodified	1044.5274	0.52738052	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.004	28.413	2	1.7414E-05	24737	160511_QHF_FH_JSI9i_1	110.87	72.08			0.56492	0.62904	69.543	4	4	Median	0.31692	0.26029	NaN	1	1	Median	0.79878	0.95019	NaN	1	1	Median	1.1713	1.1393	NaN	1	1	Median	0.39953	0.41643	NaN	1	1	Median	1846600000	1263700000	582850000	459450000	336750000	122710000	433760000	278980000	154780000	381850000	227320000	154530000	571490000	420650000	150850000	19078	512	18075	116944;116945;116946;116947	158191;158192;158193;158194	158194			4	
GIEQAVQSHAVAEEEAR	0	Unmodified	1822.881	0.88095408	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	35.679	35.351	2;3	1.5752E-15	30044	160511_QHF_FH_JSI12i_3	160.27	134.14			0.89327	0.98098	31.598	5	1	Median	NaN	NaN	NaN	0	0	Median	0.80659	1.0023	NaN	1	0	Median	0.94321	0.91413	12.71	2	0	Median	0.68137	0.68584	50.615	2	1	Median	363520000	197570000	165950000	0	0	0	60329000	33710000	26619000	151510000	80680000	70829000	151680000	83183000	68500000	19079	2780	18076	116948;116949;116950;116951;116952	158195;158196;158197;158198;158199;158200	158199			6	
GIEQAVQSHAVAEEEARK	1	Unmodified	1950.9759	0.9759171	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	4	2	32.096	31.56	3;4	5.5241E-17	27379	160511_QHF_FH_JSI11i_3	162.65	147.01			0.96656	0.91819	14.32	9	0	Median	0.97653	0.82715	2.6804	2	0	Median	0.81395	1.0021	1.6518	2	0	Median	1.0294	0.98964	17.473	4	0	Median	0.77061	0.77397	NaN	1	0	Median	1380700000	714910000	665780000	347510000	177180000	170330000	417040000	231200000	185840000	528820000	262530000	266290000	87320000	44006000	43315000	19080	2780	18077	116953;116954;116955;116956;116957;116958;116959;116960;116961;116962	158201;158202;158203;158204;158205;158206;158207;158208;158209;158210;158211;158212;158213;158214;158215;158216	158204			16	
GIEVDPK	1	Unmodified	756.40177	0.4017693	5784				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	9									3	2	1	3	23.393	22.796	2	0.0075989	20262	160511_QHF_FH_JSI12i_1	75.311	18.8	+		0.95718	1.5255	61.443	7	0	Plateau	0.96689	0.80782	0	2	0	Median	1.2728	1.5255	0	2	0	Median	0.95718	0.93006	NaN	1	0	Median	3.2466	3.3291	0	2	0	Median	1982200000	846860000	1135300000	669190000	332210000	336980000	587360000	276190000	311170000	378610000	144320000	234280000	347010000	94138000	252880000	19081	5784	18078	116963;116964;116965;116966;116967;116968;116969;116970;116971	158217;158218;158219;158220;158221	158218			5	
GIFAIIK	1	Unmodified	760.48471	0.48471107	4426	Q9BTX7	TTPAL	Alpha-tocopherol transfer protein-like	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	65.198	64.003	2	0.0087469	53662	160511_QHF_FH_JSI10i_3	85.306	33.075			1.1354	1.0451	28.111	4	2	Median	1.2561	1.032	NaN	1	0	Median	0.84476	0.98065	48.239	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0699	1.0584	NaN	1	0	Median	75399000	39720000	35679000	17645000	8408400	9236900	30906000	18851000	12055000	0	0	0	26847000	12460000	14387000	19082	4426	18079	116972;116973;116974;116975;116976	158222;158223;158224;158225;158226	158222			5	
GIFDSRK	1	Unmodified	821.43955	0.43955179	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	14.095	13.657	2	7.8358E-06	10908	160511_QHF_FH_JSI10i_3	149.4	87.402			1.0909	1.1001	59.378	4	0	Median	0.96355	0.77066	NaN	1	0	Median	0.9146	1.0396	NaN	1	0	Median	1.2352	1.1641	NaN	1	0	Median	3.0661	3.041	NaN	1	0	Median	524330000	254690000	269650000	150150000	71914000	78240000	128640000	71323000	57314000	199600000	100460000	99141000	45944000	10993000	34951000	19083	897	18080	116977;116978;116979;116980	158227;158228;158229;158230;158231	158229			5	
GIFEALRPLETLPVEGLIR	0	Unmodified	2122.215	0.21502516	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			102.37	102.21	3	7.8948E-08	83266	160511_QHF_FH_JSI9i_3	100.67	86.417			1.8541	1.8279	53.78	2	0	Median	1.5134	1.2497	NaN	1	0	Median	2.2714	2.6737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44867000	17697000	27170000	28507000	12725000	15782000	16360000	4972000	11388000	0	0	0	0	0	0	19084	2517	18081	116981;116982	158232	158232			1	
GIFEPFGR	0	Unmodified	921.47085	0.47085192	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	61.085	60.086	2	0.00023128	53067	160511_QHF_FH_JSI9i_2	117.93	14.648			0.9409	0.85062	13.431	4	2	Median	1.055	0.87798	19.311	2	1	Median	0.68377	0.77822	NaN	1	1	Median	0.99565	0.92975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2479000000	1213600000	1265400000	837490000	360740000	476760000	811590000	446170000	365410000	829920000	406650000	423270000	0	0	0	19085	2538	18082	116983;116984;116985;116986;116987	158233;158234;158235;158236;158237;158238;158239	158238			7	
GIFFSHR	0	Unmodified	862.44497	0.44497152	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			35.846	27.327	2	0.003953	15384	160513_QHF_FH_JSI10Kac_6	101.72	51.602			0.94322	1.1312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94322	1.1312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42547000	22466000	20082000	0	0	0	42547000	22466000	20082000	0	0	0	0	0	0	19086	1226	18083	116988	158240	158240			1	
GIFGFTDSDCIGK	1	Unmodified	1415.6391	0.63911582	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2								3	2	2	71.647	71.09	2	2.86E-07	63194	160511_QHF_FH_JSI10i_2	97.813	84.857			0.99217	1.0837	44.744	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.2219	NaN	1	1	Median	0.71186	0.70895	7.0959	2	1	Median	1.4296	1.4999	45.96	2	1	Median	444920000	204640000	240280000	0	0	0	26790000	9767700	17022000	182000000	116100000	65899000	236130000	78770000	157360000	19087	1226	18084	116989;116990;116991;116992;116993;116994;116995	158241;158242;158243;158244;158245;158246;158247;158248	158247			8	
GIFGSSAVPQPK	1	Unmodified	1186.6346	0.63462279	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.27		1	5					1		2	2	2	1	51.106	48.699	2	4.5482E-42	41755	160511_QHF_FH_JSI12i_3	208.25	167.26			1.1881	1.1591	20.319	7	2	Median	1.5049	1.2147	6.6277	2	2	Median	1.0524	1.2486	22.151	2	0	Median	0.95905	0.91738	27.321	2	0	Median	1.1532	1.1869	NaN	1	0	Median	582480000	269410000	313070000	50415000	21016000	29399000	92629000	53284000	39345000	162490000	62672000	99821000	276940000	132440000	144500000	19088	412	18085	116996;116997;116998;116999;117000;117001;117002	158249;158250;158251;158252;158253;158254;158255;158256;158257;158258	158258			10	
GIFHFQLGR	0	Unmodified	1073.577	0.57704833	5655	Q9Y5B0	CTDP1	RNA polymerase II subunit A C-terminal domain phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	67.837	58.794	3	2.0477E-06	32063	160513_QHF_FH_JSI11Kac_6	94.806	70.651			0.90857	0.99741	9.5157	4	1	Median	1.242	1.094	NaN	1	0	Median	0.8336	0.9966	NaN	1	0	Median	0.89602	0.8685	NaN	1	1	Median	0.92131	0.99822	NaN	1	0	Median	148440000	71696000	76748000	28706000	12219000	16487000	91150000	43544000	47606000	16672000	9036100	7635800	11916000	6896800	5019600	19089	5655	18086	117003;117004;117005;117006	158259;158260;158261;158262	158259			4	
GIFLHLSNQHEFGR	0	Unmodified	1653.8376	0.83757312	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.386								2	9	2	2	3	4	63.076	53.49	2;3;4	3.1767E-56	28501	160513_QHF_FH_JSI9Kac_6	180.48	163.79			1.1768	1.0509	14.618	11	0	Median	1.2124	1.0206	4.1379	2	0	Median	0.86793	1.0004	12.705	2	0	Median	1.3153	1.2367	16.077	3	0	Median	1.3422	1.1432	19.291	4	0	Linear	501110000	241650000	259450000	91377000	34470000	56907000	197060000	106250000	90813000	125850000	58678000	67174000	86815000	42255000	44560000	19090	430	18087	117007;117008;117009;117010;117011;117012;117013;117014;117015;117016;117017	158263;158264;158265;158266;158267;158268;158269;158270;158271;158272	158267			10	
GIFNGFSVTLK	1	Unmodified	1181.6445	0.64445919	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		4	8						4	4	4	4	4	81.489	78.876	2	1.1308E-29	66944	160511_QHF_FH_JSI9i_3	190.02	155.21			0.94998	0.93128	13.598	16	0	Median	1.0454	0.84273	12.405	4	0	Median	0.73584	0.87717	15.404	4	0	Median	0.94998	0.92639	5.2944	4	0	Median	1.032	1.0906	8.2721	4	0	Median	7790200000	4059300000	3731000000	1765300000	820780000	944560000	1757400000	995510000	761910000	1202000000	639970000	561990000	3065500000	1603000000	1462500000	19091	2146	18088	117018;117019;117020;117021;117022;117023;117024;117025;117026;117027;117028;117029;117030;117031;117032;117033	158273;158274;158275;158276;158277;158278;158279;158280;158281;158282;158283;158284;158285;158286;158287;158288;158289;158290;158291;158292;158293;158294;158295;158296;158297;158298;158299;158300;158301;158302;158303;158304;158305;158306;158307;158308	158291			36	
GIFPASYIHLK	1	Unmodified	1244.6917	0.69174374	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	70.135	69.324	3	3.2835E-06	58257	160511_QHF_FH_JSI10i_3	106.29	95.078			0.93578	0.94864	4.4931	4	0	Median	1.1552	0.95268	NaN	1	0	Median	0.85959	1.0027	NaN	1	0	Median	0.94685	0.89849	NaN	1	0	Median	0.92483	0.94463	NaN	1	0	Median	178600000	87238000	91360000	40702000	21585000	19117000	37695000	18500000	19194000	42837000	19667000	23169000	57364000	27485000	29880000	19092	2511	18089	117034;117035;117036;117037	158309;158310	158310			2	
GIFPETYIHLK	1	Unmodified	1316.7129	0.71287311	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	71.652	71.054	3	0.00011022	63099	160511_QHF_FH_JSI10i_2	70.808	63.606			1.0491	1.1515	29.271	5	2	Median	NaN	NaN	NaN	0	0	Median	0.55701	0.68465	NaN	1	0	Median	1.2286	1.1444	31.596	2	1	Median	1.1345	1.2103	7.0421	2	1	Median	142820000	66893000	75924000	0	0	0	31325000	16903000	14422000	49801000	22054000	27746000	61690000	27935000	33755000	19093	4765	18090	117038;117039;117040;117041;117042	158311;158312;158313;158314;158315	158314			5	
GIFPSGLFQGDTFR	0	Unmodified	1540.7674	0.76742787	1214	P22681	CBL	E3 ubiquitin-protein ligase CBL	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			96.701	95.875	2	0.00085122	78181	160511_QHF_FH_JSI9i_3	75.819	68.557			1.3223	1.13	NaN	1	0	Median	1.3223	1.13	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9603700	4717900	4885800	9603700	4717900	4885800	0	0	0	0	0	0	0	0	0	19094	1214	18091	117043;117044;117045	158316;158317;158318	158317			3	
GIFPVLCK	1	Unmodified	932.51536	0.51535927	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.6	2	4	4				1	4	4	4	5	5	5	70.233	65.338	2	0.00079462	57804	160511_QHF_FH_JSI11i_3	98.133	58.591			1.037	1.0861	30.228	18	5	Median	1.2224	0.99298	20.927	4	1	Median	0.91197	1.0819	30.335	4	2	Median	0.8026	0.79217	22.128	5	1	Median	1.2404	1.3649	27.983	5	1	Median	13644000000	6057600000	7586600000	1433400000	636290000	797060000	2595700000	1209000000	1386700000	4161400000	2076500000	2084900000	5453800000	2135800000	3318000000	19095	1055	18092	117046;117047;117048;117049;117050;117051;117052;117053;117054;117055;117056;117057;117058;117059;117060;117061;117062;117063;117064	158319;158320;158321;158322;158323;158324;158325;158326;158327;158328;158329;158330;158331;158332;158333;158334;158335;158336;158337;158338;158339;158340;158341;158342;158343;158344;158345;158346;158347;158348;158349;158350;158351;158352;158353;158354;158355;158356;158357;158358;158359;158360	158319			42	
GIFSQADVHR	0	Unmodified	1128.5676	0.56760585	2223	Q04864	REL	Proto-oncogene c-Rel	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		27.076	27.076	3	0.043966	23307	160511_QHF_FH_JSI11i_3	20.13	12.485			0.92385	0.85102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92385	0.85102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31787000	17158000	14629000	0	0	0	0	0	0	31787000	17158000	14629000	0	0	0	19096	2223	18093	117065	158361	158361			1	
GIFTSEIGTK	1	Unmodified	1051.555	0.55497548	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.54	2	4	4				2	4	4	4	5	6	5	50.939	45.453	2	2.1964E-12	38863	160511_QHF_FH_JSI12i_3	155.07	127.81			0.98078	1.0125	21.18	20	1	Median	1.1399	0.94027	4.6259	4	0	Median	0.96237	1.1269	5.3645	5	0	Median	0.98692	0.99066	20.774	6	0	Median	0.97709	1.0713	36.58	5	1	Median	6420700000	3240400000	3180300000	727140000	342870000	384270000	894460000	489430000	405030000	2069500000	1025900000	1043600000	2729600000	1382200000	1347400000	19097	2094	18094	117066;117067;117068;117069;117070;117071;117072;117073;117074;117075;117076;117077;117078;117079;117080;117081;117082;117083;117084;117085	158362;158363;158364;158365;158366;158367;158368;158369;158370;158371;158372;158373;158374;158375;158376;158377;158378;158379;158380;158381;158382;158383;158384;158385;158386;158387;158388;158389;158390;158391;158392;158393;158394;158395;158396	158393			33	
GIFTSGTWEEK	1	Unmodified	1253.5928	0.59281755	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.892	52.657	2	1.9441E-09	45105	160511_QHF_FH_JSI12i_3	132.01	84.929			1.0254	1.0459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0254	1.0459	NaN	1	0	Median	141890000	66749000	75141000	0	0	0	0	0	0	0	0	0	141890000	66749000	75141000	19098	2612	18095	117086	158397;158398	158398			2	
GIFVFGNPQLSVIALGSR	0	Unmodified	1874.0414	0.04141789	698	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	95.093	85.811	2	1.29E-32	46615	160513_QHF_FH_JSI12Kac_6	164.81	121.18			0.97334	1.0439	20.788	3	0	Median	1.4639	1.2508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86035	0.82623	NaN	1	0	Median	0.97334	1.0439	NaN	1	0	Median	173590000	74610000	98976000	72116000	27560000	44556000	0	0	0	71895000	30803000	41091000	29575000	16246000	13329000	19099	698	18096	117087;117088;117089	158399	158399			1	
GIFVIGFSYPVVPK	1	Unmodified	1521.8595	0.85953735	546	O75600	GCAT	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By matching		16	0									2	1		1		92.694	83.579	2	0.0054025	46992	160513_QHF_FH_JSI9Kac_6	58.676	35.072			1.055	0.97426	10.995	2	0	Median	1.0548	0.90138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0552	1.053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55097000	25186000	29911000	17792000	6677000	11115000	0	0	0	37305000	18509000	18796000	0	0	0	19100	546	18097	117090;117091	158400	158400			1	
GIFVQSLIPFYVATSMTAPSNFLHR	0	Unmodified	2795.4469	0.44689236	2820	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.881	92.16	4	4.8108E-09	53768	160513_QHF_FH_JSI10Kac_6	87.659	74.092			0.87359	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87359	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215780000	112200000	103580000	0	0	0	215780000	112200000	103580000	0	0	0	0	0	0	19101	2820	18098	117092	158401	158401			1	
GIGAGGSITGLK	1	Unmodified	1029.5819	0.58185893	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	43.022	40.162	2	0.00019068	35356	160511_QHF_FH_JSI10i_2	81.099	43.013			1.1245	0.957	33.138	5	1	Median	1.0026	0.84616	17.409	2	1	Median	0.78843	0.95485	NaN	1	0	Median	1.5321	1.5731	NaN	1	0	Median	1.3634	1.5635	NaN	1	0	Median	335300000	165510000	169790000	83467000	40270000	43197000	90547000	52175000	38372000	94108000	40664000	53444000	67180000	32401000	34779000	19102	3826	18099	117093;117094;117095;117096;117097	158402;158403;158404;158405;158406;158407;158408	158407			7	
GIGEFFR	0	Unmodified	824.41809	0.41808807	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	54.906	54.311	2	0.02937	45589	160511_QHF_FH_JSI10i_3	52.636	30.014			1.0357	0.99598	10.61	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70006	0.83002	NaN	1	0	Median	1.107	1.0156	NaN	1	0	Median	0.9582	0.97184	NaN	1	0	Median	394640000	213880000	180760000	0	0	0	94572000	57104000	37468000	150900000	71693000	79208000	149170000	85085000	64084000	19103	2595	18100	117098;117099;117100	158409	158409			1	
GIGEYVNIR	0	Unmodified	1019.54	0.53999412	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	48.256	48.136	2	0.00086812	41202	160511_QHF_FH_JSI12i_3	84.498	49.142			0.90382	0.88075	8.8085	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99137	0.93735	NaN	1	0	Median	0.824	0.82756	NaN	1	0	Median	152810000	80797000	72011000	0	0	0	0	0	0	65539000	36897000	28641000	87270000	43900000	43370000	19104	3861	18101	117101;117102	158410;158411;158412	158412			2	
GIGFGDIFK	1	Unmodified	952.50182	0.5018177	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	79.685	78.832	2	0.00092686	68086	160511_QHF_FH_JSI12i_2	71.501	35.106			0.94106	1.0398	28.59	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0297	1.2479	NaN	1	0	Median	0.86006	0.86638	NaN	1	0	Median	0.8763	0.94136	41.077	2	0	Median	63711000	34360000	29351000	0	0	0	4464100	2673900	1790200	24201000	12405000	11796000	35047000	19282000	15765000	19105	5664	18102	117103;117104;117105;117106	158413;158414;158415;158416;158417	158413			5	
GIGFLTSGWR	0	Unmodified	1092.5716	0.5716286	3445	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.403	71.337	2	0.00051922	38991	160513_QHF_FH_JSI10Kac_6	88.948	47.919			1.0883	1.2546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0883	1.2546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57829000	28930000	28899000	0	0	0	57829000	28930000	28899000	0	0	0	0	0	0	19106	3445	18103	117107	158418;158419	158418			2	
GIGGIFFDDLDSPSK	1	Unmodified	1566.7566	0.75658842	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	89.347	89.053	2	8.1769E-17	79324	160511_QHF_FH_JSI11i_3	125.54	106.41			2.0711	2.3051	54.021	2	2	Median	NaN	NaN	NaN	0	0	Median	2.748	3.3773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5609	1.5732	NaN	1	1	Median	79832000	35645000	44187000	0	0	0	23645000	10436000	13209000	0	0	0	56188000	25209000	30979000	19107	1456	18104	117108;117109;117110;117111	158420;158421;158422;158423	158420			4	
GIGHVIK	1	Unmodified	722.44391	0.44390889	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	11.982	11.632	2	0.002611	9200	160511_QHF_FH_JSI9i_3	109.88	37.885			0.86469	0.89585	9.2928	4	0	Median	1.166	0.93066	NaN	1	0	Median	0.86199	1.0118	NaN	1	0	Median	0.86741	0.81733	NaN	1	0	Median	0.84249	0.86234	NaN	1	0	Median	953260000	431550000	521700000	253130000	94911000	158220000	208490000	95202000	113290000	227750000	130300000	97445000	263890000	111140000	152750000	19108	3904	18105	117112;117113;117114;117115	158424;158425;158426;158427;158428;158429;158430	158429			7	
GIGIENIHYLNDGLWHMK	1	Unmodified	2109.0466	0.046579622	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		4	10								3	4	7	86.693	86.447	3;4	3.2973E-23	76732	160511_QHF_FH_JSI11i_3	171.09	165.76			1.0652	1.0469	42.91	14	6	Median	NaN	NaN	NaN	0	0	Median	0.68404	0.87918	34.421	3	2	Median	1.0861	0.98769	21.738	4	1	Median	1.0867	1.1172	44.357	7	3	Median	831540000	404720000	426820000	0	0	0	39584000	23445000	16139000	267360000	143660000	123690000	524600000	237610000	286990000	19109	5395	18106	117116;117117;117118;117119;117120;117121;117122;117123;117124;117125;117126;117127;117128;117129	158431;158432;158433;158434;158435;158436;158437;158438;158439;158440;158441;158442;158443;158444;158445;158446;158447;158448;158449;158450;158451;158452;158453;158454;158455;158456;158457	158434			26	
GIGIENIHYLNDGLWHMK	1	Oxidation (M)	2125.0415	0.041494244	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	77.213	76.946	3;4	5.8755E-05	66703	160511_QHF_FH_JSI12i_3	66.893	63.605			1.0958	1.2677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0958	1.2677	NaN	1	0	Median	72157000	37777000	34379000	0	0	0	0	0	0	0	0	0	72157000	37777000	34379000	19110	5395	18106	117130;117131	158458;158459;158460	158459		2652	3	
GIGIENIHYLNDGLWHMKTYK	2	Acetyl (K)	2543.2631	0.26311434	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.156	75.837	4	2.8297E-05	41999	160513_QHF_FH_JSI11Kac_6	114.84	99.141			0.25846	0.25191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25846	0.25191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95620000	83689000	11931000	0	0	0	0	0	0	95620000	83689000	11931000	0	0	0	19111	5395	18107	117132	158461	158461	3385		1	
GIGLAAQDILHNNPSSQR	0	Unmodified	1889.9708	0.97077214	3243	Q7RTP0	NIPA1	Magnesium transporter NIPA1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				58.292	56.747	3	0.00016694	46550	160511_QHF_FH_JSI9i_3	65.107	50.163			1.1699	1.0001	NaN	1	1	Median	1.1699	1.0001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8197400	1968400	6229000	8197400	1968400	6229000	0	0	0	0	0	0	0	0	0	19112	3243	18108	117133	158462	158462			1	
GIGLAIAR	0	Unmodified	769.48102	0.48102268	572	O75828	CBR3	Carbonyl reductase [NADPH] 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				44.033	42.45	2	0.0057109	34751	160511_QHF_FH_JSI9i_3	64.803	20.192			1.6844	1.3899	NaN	1	0	Median	1.6844	1.3899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32423000	12487000	19936000	32423000	12487000	19936000	0	0	0	0	0	0	0	0	0	19113	572	18109	117134	158463	158463			1	
GIGLAIVR	0	Unmodified	797.51232	0.51232281	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.61	6.39		4	4				1	5	4	4	4	5	5	57.91	51.844	2	3.6566E-16	27488	160513_QHF_FH_JSI9Kac_5	166.13	55.59			0.96591	0.99468	12.584	18	0	Median	1.3155	1.0771	8.9284	4	0	Median	0.86169	1.0074	6.5727	4	0	Median	1.0015	0.95976	11.404	5	0	Median	0.86448	0.9484	20.217	5	0	Median	3292000000	1695800000	1596200000	870470000	401510000	468960000	1035000000	558090000	476880000	866100000	455090000	411010000	520450000	281080000	239370000	19114	1092	18110	117135;117136;117137;117138;117139;117140;117141;117142;117143;117144;117145;117146;117147;117148;117149;117150;117151;117152	158464;158465;158466;158467;158468;158469;158470;158471;158472;158473;158474;158475;158476;158477;158478;158479;158480;158481;158482;158483;158484;158485;158486;158487;158488;158489	158467			25	
GIGLGNYHPATENPGTSSK	1	Unmodified	1898.9123	0.91225421	1253	P25054	APC	Adenomatous polyposis coli protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		38.455	37.71	3	1.2688E-07	33055	160511_QHF_FH_JSI11i_3	75.589	58.307			0.99371	1.0186	4.5899	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90097	1.0522	NaN	1	0	Median	1.096	0.98608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58670000	29895000	28775000	0	0	0	24875000	12397000	12477000	33795000	17498000	16298000	0	0	0	19115	1253	18111	117153;117154;117155	158490;158491;158492	158490			1	
GIGMGMTVPISFAVFPNEDGSLQK	1	Unmodified	2494.2236	0.22361729	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.81	101.69	3	1.4552E-07	89448	160511_QHF_FH_JSI11i_2	66.122	54.38			1.3018	1.315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3018	1.315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123340000	48453000	74888000	0	0	0	0	0	0	123340000	48453000	74888000	0	0	0	19116	4965	18112	117156	158493	158493			1	
GIGMGNIGPAGMGMEGIGFGINK	1	2 Oxidation (M)	2209.033	0.032979747	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	79.883	79.072	3	3.1818E-17	68929	160511_QHF_FH_JSI12i_3	136.49	132.77			0.99801	0.99948	7.0414	9	1	Median	1.3298	1.0725	1.8606	3	1	Plateau	0.90747	1.0264	3.7541	2	0	Median	1.0019	0.93743	1.6988	2	0	Median	0.89839	0.90316	1.8942	2	0	Median	474950000	233310000	241650000	79669000	32220000	47449000	70202000	36737000	33464000	162150000	76092000	86056000	162930000	88255000	74677000	19117	1765	18113	117157;117158;117159;117160;117161;117162;117163;117164;117165	158494;158495;158496;158497;158498;158499;158500;158501;158502;158503;158504;158505;158506;158507;158508;158509	158508		1439;1440;1441	16	
GIGMGNIGPAGMGMEGIGFGINK	1	Oxidation (M)	2193.0381	0.038065125	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.76	0.427		6	19							6	8	5	6	89.859	89.404	2;3	1.5243E-58	80251	160511_QHF_FH_JSI11i_3	216.15	196.57			0.93134	0.9411	12.106	21	1	Median	1.2508	1.0585	16.273	4	1	Median	0.76104	0.88614	14.872	6	0	Median	1.0544	0.91454	5.5521	5	0	Linear	0.934	0.95653	3.9706	6	0	Median	1739200000	911990000	827250000	116670000	55451000	61217000	270990000	162570000	108420000	448390000	224380000	224020000	903190000	469590000	433600000	19118	1765	18113	117166;117167;117168;117169;117170;117171;117172;117173;117174;117175;117176;117177;117178;117179;117180;117181;117182;117183;117184;117185;117186;117187;117188;117189;117190	158510;158511;158512;158513;158514;158515;158516;158517;158518;158519;158520;158521;158522;158523;158524;158525;158526;158527;158528;158529;158530;158531;158532;158533;158534;158535;158536;158537;158538;158539;158540;158541;158542;158543;158544;158545;158546;158547;158548;158549;158550;158551;158552	158517		1439;1440;1441	42	
GIGMGNIGPAGMGMEGIGFGINK	1	Unmodified	2177.0432	0.043150503	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.75	4	8	10							6	5	5	6	100.04	99.943	2;3	2.3385E-103	89136	160511_QHF_FH_JSI11i_3	322.89	308.1			0.93659	0.9676	8.8308	18	6	Median	1.3149	1.0817	4.3093	5	2	Median	0.81214	0.98408	8.7249	5	2	Median	0.97447	0.94203	8.572	4	1	Median	0.87614	0.89372	3.6817	4	1	Median	5205200000	2565000000	2640200000	895820000	369790000	526040000	919540000	480050000	439490000	1627900000	856560000	771360000	1761900000	858630000	903290000	19119	1765	18113	117191;117192;117193;117194;117195;117196;117197;117198;117199;117200;117201;117202;117203;117204;117205;117206;117207;117208;117209;117210;117211;117212	158553;158554;158555;158556;158557;158558;158559;158560;158561;158562;158563;158564;158565;158566;158567;158568;158569;158570;158571;158572;158573;158574;158575;158576;158577;158578;158579;158580;158581;158582;158583;158584;158585;158586;158587;158588;158589;158590;158591;158592;158593;158594;158595;158596;158597;158598;158599;158600;158601;158602	158560			50	
GIGPVYSSK	1	Unmodified	906.48108	0.48108226	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	5.95		3	3				3	2		3	2	2	4	27.537	23.285	2	0.00056389	19390	160511_QHF_FH_JSI11i_2	78.334	36.832			0.85777	0.80621	17.968	10	1	Median	0.80744	0.69088	11.164	3	0	Plateau	0.63572	0.75457	21.819	2	1	Median	1.0595	1.0567	10.972	2	0	Median	0.69275	0.73549	15.245	3	0	Median	550730000	290850000	259870000	133550000	65439000	68113000	19549000	11956000	7592800	198190000	99167000	99018000	199440000	114290000	85150000	19120	1356	18114	117213;117214;117215;117216;117217;117218;117219;117220;117221;117222;117223	158603;158604;158605;158606;158607;158608;158609;158610;158611	158609			9	
GIGQEHFFK	1	Unmodified	1061.5294	0.52942943	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.19	33.148	3	0.03998	28919	160511_QHF_FH_JSI9i_2	28.797	20.216			1.4212	1.2526	NaN	1	1	Median	1.4212	1.2526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36754000	13904000	22850000	36754000	13904000	22850000	0	0	0	0	0	0	0	0	0	19121	384	18115	117224	158612	158612			1	
GIGQEHFFKK	2	Acetyl (K)	1231.635	0.63495714	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.914	38.225	2	0.049765	20796	160513_QHF_FH_JSI11Kac_6	53.327	36.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2048400	2048400	0	0	0	0	0	0	0	2048400	2048400	0	0	0	0	19122	384	18116	117225	158613	158613			1	
GIGQVLPTHLMEER	0	Unmodified	1578.8188	0.81881152	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			65.409	63.911	2	3.1555E-07	53529	160511_QHF_FH_JSI10i_3	90.685	75.995			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19123	2229	18117	117226	158614	158614			1	
GIGTDEFTLNR	0	Unmodified	1221.599	0.59896556	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	2	2	1	52.612	51.771	2	1.4975E-72	44722	160511_QHF_FH_JSI11i_2	239.6	205.51			1.0607	1.0597	11.091	7	1	Median	1.4166	1.1685	17.7	2	1	Median	0.79648	0.9611	4.4886	2	0	Median	1.0878	1.078	2.4136	2	0	Median	0.99319	1.1085	NaN	1	0	Median	887680000	439370000	448310000	211470000	87511000	123960000	198130000	125510000	72618000	357400000	170950000	186450000	120670000	55394000	65280000	19124	1018	18118	117227;117228;117229;117230;117231;117232;117233;117234	158615;158616;158617;158618;158619;158620;158621;158622;158623;158624	158621			10	
GIGTDEK	1	Unmodified	718.34973	0.34973373	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.2833	5.9372	2	0.024573	3951	160511_QHF_FH_JSI12i_1	48.787	18.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19125	1018	18119	117235	158625	158625			1	
GIGTLHLKPTANQK	2	Unmodified	1476.8413	0.84126152	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			28.585	27.204	2;3	2.156E-05	22455	160511_QHF_FH_JSI10i_3	74.789	59.244			0.66717	0.53187	NaN	1	1	Median	0.66717	0.53187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127940000	68398000	59541000	127940000	68398000	59541000	0	0	0	0	0	0	0	0	0	19126	5382	18120	117236;117237;117238	158626;158627;158628	158626			3	
GIGTNEQAIIDVLTK	1	Unmodified	1570.8566	0.85663681	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								3	3	3	1	90.396	89.901	2;3	4.1002E-08	81475	160511_QHF_FH_JSI10i_1	99.834	85.155			1.1173	1.0753	13.155	8	6	Median	1.1711	1.023	11.36	3	3	Median	0.91322	1.0987	NaN	1	0	Median	1.0681	1.0523	17.928	3	3	Median	1.1624	1.266	NaN	1	0	Median	304710000	153560000	151150000	95101000	46552000	48549000	56272000	27949000	28323000	115390000	61570000	53821000	37949000	17488000	20460000	19127	2986	18121	117239;117240;117241;117242;117243;117244;117245;117246;117247;117248	158629;158630;158631;158632;158633;158634;158635;158636;158637;158638;158639;158640	158631			12	
GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK	1	Unmodified	3662.8589	0.85890878	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	97.637	89.553	4;5	1.2848E-186	50696	160513_QHF_FH_JSI9Kac_6	286.96	264.57			0.87813	0.77619	9.4785	6	0	Linear	1.0656	0.90759	11.382	2	0	Median	0.73462	0.87249	12.024	2	0	Median	1.0656	0.99756	NaN	1	0	Median	0.79142	0.83931	NaN	1	0	Median	2964600000	1664200000	1300400000	786230000	387060000	399170000	1599900000	981020000	618890000	196440000	91220000	105220000	381990000	204860000	177130000	19128	1765	18122	117249;117250;117251;117252;117253;117254	158641;158642;158643;158644;158645;158646;158647;158648;158649	158644			9	
GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK	1	Oxidation (M)	3678.8538	0.8538234	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	1				By MS/MS	16	0									1				1	97.391	87.949	4	7.0835E-38	48161	160513_QHF_FH_JSI12Kac_6	171.79	157.27			0.77649	0.83021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77649	0.83021	NaN	1	1	Median	85153000	59032000	26121000	0	0	0	0	0	0	0	0	0	85153000	59032000	26121000	19129	1765	18122	117255	158650	158650		1442	1	
GIGVAASSVPMNFK	1	Unmodified	1376.7122	0.71222118	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	65.171	64.637	2	0.00013026	57438	160511_QHF_FH_JSI11i_3	112.13	86.191			0.615	0.63858	21.778	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64098	0.62595	36.811	2	1	Median	0.615	0.63858	7.9895	2	0	Median	142380000	78421000	63954000	0	0	0	0	0	0	74404000	39840000	34564000	67971000	38581000	29390000	19130	5229	18123	117256;117257;117258;117259	158651;158652;158653	158651			2	
GIGYFFVLQPK	1	Unmodified	1267.6965	0.69649476	5302	Q9UHI8	ADAMTS1	A disintegrin and metalloproteinase with thrombospondin motifs 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			85.633	79.932	2	2.9133E-06	43048	160513_QHF_FH_JSI9Kac_6	107.66	95.049			0.68448	0.80766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68448	0.80766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36804000	18062000	18742000	0	0	0	36804000	18062000	18742000	0	0	0	0	0	0	19131	5302	18124	117260;117261	158654;158655	158654			2	
GIHDAFVK	1	Unmodified	885.47085	0.47085192	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		20.842	20.842	2	0.015932	17559	160511_QHF_FH_JSI11i_3	48.561	29.084			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19132	1746	18125	117262	158656	158656			1	
GIHFSIVSPR	0	Unmodified	1111.6138	0.61382777	3207	Q71SY5	MED25	Mediator of RNA polymerase II transcription subunit 25	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	59.342	49.979	3	0.0001761	27222	160513_QHF_FH_JSI10Kac_6	74.841	54.526			0.98924	1.1738	7.5563	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98924	1.1738	NaN	1	1	Median	1.1935	1.1364	NaN	1	0	Median	0.96929	1.0163	NaN	1	0	Median	218940000	126460000	92482000	0	0	0	136920000	80423000	56501000	49733000	27074000	22660000	32286000	18964000	13322000	19133	3207	18126	117263;117264;117265	158657;158658;158659	158659			3	
GIHGPFLVIAPLSTIPNWER	0	Unmodified	2216.2106	0.21060848	5210	Q9P2D1	CHD7	Chromodomain-helicase-DNA-binding protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		92.043	84.496	3	0.00014457	46905	160513_QHF_FH_JSI11Kac_6	79.88	69.78			0.97581	1.0447	1.1212	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88184	1.0531	NaN	1	1	Median	1.0798	1.0365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85918000	47800000	38118000	0	0	0	39073000	28175000	10898000	46845000	19626000	27220000	0	0	0	19134	5210	18127	117266;117267	158660;158661	158660			2	
GIHNSIGDYR	0	Unmodified	1130.5469	0.54687041	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	18.778	18.149	2;3	7.0095E-08	15114	160511_QHF_FH_JSI11i_3	123.86	115.33			1.0969	1.1158	15.123	10	4	Median	1.5329	1.304	25.158	3	2	Median	0.96093	1.1958	16.17	3	2	Median	1.1869	1.1158	2.9895	2	0	Median	1.0152	1.0361	1.1857	2	0	Median	2175700000	1045300000	1130300000	305670000	124140000	181530000	499880000	276960000	222930000	952790000	435100000	517690000	417330000	209130000	208190000	19135	1085	18128	117268;117269;117270;117271;117272;117273;117274;117275;117276;117277	158662;158663;158664;158665;158666;158667;158668;158669;158670;158671;158672;158673;158674	158665			13	
GIHPTIISESFQK	1	Unmodified	1455.7722	0.7721789	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.43		7	8						8	6	6	6	5	53.404	49.59	2;3	1.1587E-52	41736	160511_QHF_FH_JSI10i_3	212.72	182.16			0.9684	0.94724	12.557	23	1	Median	1.0039	0.85474	12.969	6	0	Median	0.74766	0.86599	4.8973	6	0	Median	1.0075	0.98	4.0728	6	0	Median	0.9684	1	21.298	5	1	Median	22607000000	10985000000	11622000000	3347200000	1600900000	1746400000	4607700000	2224300000	2383400000	5610400000	2416300000	3194100000	9042000000	4743900000	4298000000	19136	1722	18129	117278;117279;117280;117281;117282;117283;117284;117285;117286;117287;117288;117289;117290;117291;117292;117293;117294;117295;117296;117297;117298;117299;117300	158675;158676;158677;158678;158679;158680;158681;158682;158683;158684;158685;158686;158687;158688;158689;158690;158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706;158707;158708;158709;158710;158711;158712;158713;158714;158715;158716;158717;158718;158719;158720;158721;158722;158723;158724;158725;158726;158727;158728;158729;158730;158731;158732;158733	158685			59	
GIHPTIISESFQKALEK	2	Acetyl (K)	1939.0415	0.041477469	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.023	71.709	3	2.2685E-24	39410	160513_QHF_FH_JSI11Kac_6	157.91	146.79			0.26297	0.25265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26297	0.25265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115630000	89314000	26315000	0	0	0	0	0	0	115630000	89314000	26315000	0	0	0	19137	1722	18130	117301	158734	158734	1741		1	
GIHQSTIDLK	1	Unmodified	1110.6033	0.60332266	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	3.32	3	6	7						1	2	3	6	6	24.2	23.33	2;3	1.8919E-09	20278	160511_QHF_FH_JSI10i_2	150.35	115.96			0.6755	0.79784	102.4	15	5	Median	0.066875	0.058096	NaN	1	1	Median	0.66362	0.79078	24.842	3	0	Median	0.86274	0.82167	41.37	5	1	Median	0.92315	1.0159	111.65	6	3	Median	1580700000	918870000	661870000	75556000	71234000	4322200	186770000	120470000	66303000	446200000	273260000	172930000	872220000	453910000	418320000	19138	2525	18131	117302;117303;117304;117305;117306;117307;117308;117309;117310;117311;117312;117313;117314;117315;117316;117317;117318	158735;158736;158737;158738;158739;158740;158741;158742;158743;158744;158745;158746;158747;158748;158749	158743			15	
GIHSAIDASQTPDVVFASILAAFSK	1	Unmodified	2544.3224	0.32240336	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	1	1	4	3	101.17	97.424	3;4	1.6186E-53	51563	160513_QHF_FH_JSI9Kac_6	188.3	177.8			0.90772	0.9416	28.895	9	4	Median	1.4167	1.211	NaN	1	0	Median	0.60009	0.72018	NaN	1	0	Median	0.87976	0.83676	41.736	4	2	Median	0.87876	0.94185	4.0061	3	2	Plateau	1647100000	837280000	809830000	389570000	154930000	234640000	305660000	193760000	111890000	488360000	257890000	230480000	463520000	230690000	232830000	19139	1835	18132	117319;117320;117321;117322;117323;117324;117325;117326;117327	158750;158751;158752;158753;158754;158755;158756;158757;158758;158759;158760;158761;158762	158756			12	
GIHVEVPPAEAER	0	Unmodified	1402.7205	0.72047768	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		12	12					3		5	4	9	9	39.577	37.881	2;3	6.7208E-07	31776	160511_QHF_FH_JSI12i_3	91.855	79.619			1.1035	1.1049	23.187	17	9	Median	1.583	1.3615	3.7711	2	1	Median	1.322	1.6394	61.458	2	1	Median	1.1035	1.0744	15.243	7	4	Median	1.0077	1.0849	9.3675	6	3	Median	1457100000	532730000	924380000	147660000	44066000	103590000	319190000	98819000	220370000	375480000	154780000	220700000	614770000	235060000	379710000	19140	1473	18133	117328;117329;117330;117331;117332;117333;117334;117335;117336;117337;117338;117339;117340;117341;117342;117343;117344;117345;117346;117347;117348;117349;117350;117351;117352;117353;117354	158763;158764;158765;158766;158767;158768;158769;158770;158771;158772;158773;158774;158775;158776;158777;158778;158779;158780;158781;158782;158783;158784;158785;158786;158787;158788;158789;158790;158791;158792;158793;158794;158795;158796	158794			33	
GIHVIVLNQATGHVMAK	1	Unmodified	1786.9876	0.98760818	3824	Q8WZA1	POMGNT1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		62.761	53.062	4	0.044988	28696	160513_QHF_FH_JSI11Kac_6	24.481	19.932			0.99597	0.98092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99597	0.98092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12781000	6251000	6530100	0	0	0	0	0	0	12781000	6251000	6530100	0	0	0	19141	3824	18134	117355	158797	158797			0	
GIHYWEVELQK	1	Unmodified	1400.7089	0.70885036	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	2	3	4	63.044	57.243	2;3	2.5416E-08	30419	160513_QHF_FH_JSI9Kac_6	115.18	92.258			0.89407	0.88092	16.961	11	4	Median	0.88089	0.73976	28.788	2	2	Median	0.76378	0.90021	17.834	2	0	Median	0.93305	0.88092	15.851	3	1	Median	0.861	0.89694	13.132	4	1	Median	892980000	439090000	453890000	37073000	16621000	20452000	98071000	61168000	36903000	330720000	142630000	188090000	427110000	218670000	208440000	19142	2525	18135	117356;117357;117358;117359;117360;117361;117362;117363;117364;117365;117366	158798;158799;158800;158801;158802;158803;158804;158805;158806;158807;158808;158809;158810;158811;158812	158803			15	
GIIASSIGTILK	1	Unmodified	1171.7176	0.71762413	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	80.037	75.699	2	2.086E-31	68151	160511_QHF_FH_JSI12i_3	190.24	159.16			1.2397	1.1885	50.436	7	0	Median	1.2018	1.0006	27.877	2	0	Median	0.80615	0.94467	NaN	1	0	Median	1.2946	1.2168	3.3266	2	0	Median	2.0449	2.14	83.839	2	0	Median	1220500000	580420000	640050000	246470000	112590000	133880000	217700000	126670000	91036000	365950000	169060000	196900000	390340000	172100000	218230000	19143	4951	18136	117367;117368;117369;117370;117371;117372;117373	158813;158814;158815;158816;158817;158818;158819;158820;158821;158822;158823;158824	158823			11	
GIIASSVGTILK	1	Unmodified	1157.702	0.70197407	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.48	1	4	4					1	4	4	4	3	3	72.087	68.414	2	2.086E-31	57868	160511_QHF_FH_JSI10i_3	190.24	97.796			0.9164	0.9675	15.105	14	2	Median	1.2196	1.021	16.887	4	1	Median	0.84971	1.0136	22.5	4	1	Median	0.90474	0.85756	2.9879	3	0	Plateau	0.97035	0.97672	7.4504	3	0	Median	2822100000	1350800000	1471400000	574730000	248290000	326440000	514730000	264410000	250330000	676860000	342080000	334780000	1055800000	495980000	559820000	19144	1126	18137	117374;117375;117376;117377;117378;117379;117380;117381;117382;117383;117384;117385;117386;117387	158825;158826;158827;158828;158829;158830;158831;158832;158833;158834;158835;158836;158837;158838;158839;158840;158841	158827			16	
GIIDAFHQIIR	0	Unmodified	1281.7194	0.71935547	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		79.887	78.981	3	7.2347E-05	65051	160511_QHF_FH_JSI9i_3	76.143	63.187			0.39803	0.48454	35.596	3	1	Median	0.70447	0.60406	NaN	1	0	Median	0.39803	0.48454	NaN	1	0	Median	0.31142	0.30102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23039000	16427000	6612100	7069500	4683600	2385900	6808300	4717500	2090800	9161400	7026000	2135400	0	0	0	19145	378	18138	117388;117389;117390	158842;158843;158844;158845	158844			4	
GIIDPTK	1	Unmodified	742.4225	0.42250475	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	5.84	4	4	2			4	2	1		5	3	4	5	25.841	21.259	2	0.0017493	13684	160513_QHF_FH_JSI11Kac_3	105.39	16.656			1.0334	0.98279	12.462	17	1	Median	1.1622	0.98279	10.408	5	1	Median	0.70961	0.84507	7.6639	3	0	Median	1.041	1.0234	8.2243	4	0	Median	0.87281	0.94435	12.813	5	0	Median	21143000000	10775000000	10368000000	4569600000	2043500000	2526100000	5285300000	3063200000	2222100000	5785500000	2763000000	3022500000	5503100000	2905700000	2597400000	19146	980	18139	117391;117392;117393;117394;117395;117396;117397;117398;117399;117400;117401;117402;117403;117404;117405;117406;117407	158846;158847;158848;158849;158850;158851;158852;158853;158854;158855;158856;158857;158858;158859;158860;158861;158862;158863;158864;158865;158866;158867;158868;158869;158870;158871;158872;158873;158874;158875;158876;158877;158878;158879;158880	158858			35	
GIIDPTKVVR	1	Acetyl (K)	1138.671	0.67100829	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.373						1	5				2	2	2	71.539	61.018	2	0.0062951	32558	160513_QHF_FH_JSI10Kac_4	64.711	34.457			0.6493	0.72433	130.82	6	1	Median	NaN	NaN	NaN	0	0	Median	0.8975	1.0466	6.6059	2	0	Median	0.32487	0.31816	16.721	2	0	Median	2.1887	2.3471	211.71	2	1	Median	94081000	65752000	28329000	0	0	0	16481000	8622900	7858000	65903000	50714000	15189000	11698000	6416000	5281900	19147	980	18140	117408;117409;117410;117411;117412;117413	158881;158882;158883;158884;158885;158886	158882	757		6	
GIIDSTVGEHR	0	Unmodified	1182.5993	0.59929991	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								2	2	3	26.3	25.788	2;3	6.0164E-23	21485	160511_QHF_FH_JSI12i_3	169.44	140.06			1.2506	1.2875	20.491	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0829	1.2677	43.369	2	0	Median	1.2583	1.3042	NaN	1	0	Median	1.243	1.2711	10.044	3	1	Median	416010000	195540000	220470000	0	0	0	38120000	19007000	19113000	39977000	17234000	22743000	337910000	159300000	178610000	19148	1239	18141	117414;117415;117416;117417;117418;117419;117420	158887;158888;158889;158890;158891	158890			5	
GIIDSTVSDQR	0	Unmodified	1189.5939	0.59388018	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.972	30.689	2	1.5757E-05	27274	160511_QHF_FH_JSI10i_1	106.2	84.051			1.489	1.5848	6.2049	2	2	Median	NaN	NaN	NaN	0	0	Median	1.422	1.6559	NaN	1	1	Median	1.5592	1.5168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	460710000	181360000	279350000	0	0	0	241380000	101630000	139740000	219330000	79727000	139610000	0	0	0	19149	1168	18142	117421;117422;117423;117424	158892;158893;158894;158895	158894			4	
GIIELLGSK	1	Unmodified	928.55933	0.55933258	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	66.927	66.556	2	0.00018602	57454	160511_QHF_FH_JSI12i_3	103.56	42.775			1.3918	1.2981	31.023	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73713	0.89102	NaN	1	0	Median	1.3918	1.2981	NaN	1	0	Median	1.6324	1.6487	NaN	1	1	Median	153290000	71518000	81770000	0	0	0	20614000	10781000	9832900	46669000	19032000	27637000	86004000	41704000	44300000	19150	5468	18143	117425;117426;117427	158896;158897;158898	158898			3	
GIIGGKSQR	1	Acetyl (K)	956.54033	0.54032847	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15	0								2			1		1	24.869	15.726	2	0.013602	9479	160513_QHF_FH_JSI10Kac_5	59.245	21.007			0.83362	0.93861	4.9119	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78329	0.90657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88718	0.97178	NaN	1	0	Median	4072500	2160600	1911900	0	0	0	1523500	824910	698600	0	0	0	2549000	1335700	1213300	19151	4945	18144	117428;117429	158899	158899	3277		1	
GIIGNDGR	0	Unmodified	800.41407	0.41406533	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	12.463	12.162	2	0.0047093	9485	160511_QHF_FH_JSI11i_2	66.429	34.474			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19152	485	18145	117430;117431	158900;158901	158901			2	
GIIGYDV	0	Unmodified	735.38031	0.38030558	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.777	59.673	1	0.056258	53074	160511_QHF_FH_JSI9i_1	102.12	102.12			2.1545	1.7458	NaN	1	0	Median	2.1545	1.7458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50326000	14054000	36271000	50326000	14054000	36271000	0	0	0	0	0	0	0	0	0	19153	592	18146	117432	158902	158902			1	
GIIIMGEDDDSHPSEMR	0	Unmodified	1900.8295	0.82951214	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	51.44	50.31	3	3.8392E-06	44337	160511_QHF_FH_JSI10i_2	75.463	72.074			1.0499	0.93212	11.519	3	0	Plateau	1.0499	0.93016	NaN	1	0	Median	0.86298	1.0552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0522	1.1707	NaN	1	0	Median	97371000	56037000	41334000	36645000	26309000	10336000	32182000	16760000	15421000	0	0	0	28544000	12968000	15576000	19154	4598	18147	117433;117434;117435	158903;158904;158905	158905			3	
GIILAGTEEQK	1	Unmodified	1157.6292	0.62920306	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8	6		3					3				2	2	2	38.691	35.489	2	3.7313E-06	30267	160511_QHF_FH_JSI11i_2	120.99	89.054			1.0728	0.97514	16.288	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.81237	0.9863	NaN	1	0	Median	1.2469	1.2432	NaN	1	0	Median	0.83387	0.89953	9.8048	2	1	Median	206240000	100400000	105840000	0	0	0	53821000	30478000	23343000	86928000	38488000	48440000	65495000	31435000	34060000	19155	4777	18148	117436;117437;117438;117439;117440;117441	158906;158907;158908;158909;158910	158909			5	
GIILFISR	0	Unmodified	917.56984	0.56983769	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.063	70.7	2	8.4392E-24	38581	160513_QHF_FH_JSI11Kac_6	185.42	149.24			1.0638	1.0806	28.093	4	0	Median	1.5048	1.2979	NaN	1	0	Median	0.60033	0.71365	NaN	1	0	Median	0.97007	0.93093	NaN	1	0	Median	1.1667	1.2544	NaN	1	0	Median	656610000	329530000	327080000	235740000	90391000	145350000	214740000	132310000	82429000	113700000	64111000	49585000	92436000	42719000	49717000	19156	5566	18149	117442;117443;117444;117445	158911;158912;158913;158914;158915	158911			5	
GIINPFPASK	1	Unmodified	1042.5811	0.58113065	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.792	55.55	2	0.005767	47689	160511_QHF_FH_JSI12i_3	61.65	41.346			1.1977	1.1974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1977	1.1974	NaN	1	0	Median	29768000	12034000	17733000	0	0	0	0	0	0	0	0	0	29768000	12034000	17733000	19157	3276	18150	117446	158916	158916			1	
GIIPLENLSIR	0	Unmodified	1223.7238	0.72377215	4265	Q99418;Q15438;O43739	CYTH2;CYTH1;CYTH3	Cytohesin-2;Cytohesin-1;Cytohesin-3	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	83.445	83.179	2	0.0013463	74144	160511_QHF_FH_JSI11i_3	64.297	45.517			1.0718	1.0201	25.825	3	1	Plateau	1.8539	1.604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.179	1.0624	NaN	1	0	Median	0.99677	0.9967	NaN	1	0	Median	96332000	50009000	46323000	13969000	5747500	8221900	0	0	0	39964000	21938000	18026000	42398000	22323000	20075000	19158	4265	18151	117447;117448;117449	158917;158918;158919	158917			2	
GIISAADRLEAAEMYR	0	Unmodified	1764.8829	0.88286834	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				64.828	63.326	3	0.00042596	52037	160511_QHF_FH_JSI9i_3	58.671	46.979			1.4865	1.2027	NaN	1	0	Median	1.4865	1.2027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64177000	26330000	37847000	64177000	26330000	37847000	0	0	0	0	0	0	0	0	0	19159	989	18152	117450	158920	158920			1	
GIITAVEPSTPTVLR	0	Unmodified	1552.8825	0.88245763	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	70.789	69.897	2	0.00016053	61283	160511_QHF_FH_JSI11i_2	93.345	67.407			0.86963	0.82426	22.92	4	1	Median	0.88939	0.78717	NaN	1	0	Median	0.95628	1.1279	NaN	1	0	Median	0.8503	0.86309	NaN	1	0	Median	0.61466	0.64999	NaN	1	1	Median	69675000	33325000	36349000	16249000	6120100	10129000	17533000	7007200	10526000	19480000	10325000	9154400	16412000	9872800	6539500	19160	5698	18153	117451;117452;117453;117454;117455	158921;158922;158923;158924;158925;158926	158923			6	
GIITWGLLPGPYHR	0	Unmodified	1578.8671	0.86708234	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	83.759	75.302	2;3	3.9458E-24	42591	160513_QHF_FH_JSI10Kac_6	198.87	162.92			0.87933	0.87995	26.246	5	5	Median	0.6161	0.52475	NaN	1	1	Median	0.50978	0.61282	NaN	1	1	Median	0.92668	0.89398	2.2375	2	2	Median	0.87933	0.92724	NaN	1	1	Median	1163700000	703620000	460050000	493070000	335880000	157190000	143930000	92485000	51447000	341140000	174790000	166350000	185520000	100470000	85052000	19161	4443	18154	117456;117457;117458;117459;117460	158927;158928;158929;158930;158931	158931			5	
GIIVHTMAAVEALGAK	1	Unmodified	1579.8756	0.87559811	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	72.698	71.779	2;3	1.0789E-51	59307	160511_QHF_FH_JSI9i_3	213.16	203.47			0.98687	0.88458	15.798	7	0	Median	1.1257	0.91492	5.4995	2	0	Median	0.70628	0.8049	4.6378	2	0	Median	0.98687	0.88458	NaN	1	0	Median	1.0775	1.0997	20.922	2	0	Median	760480000	401830000	358640000	224670000	105160000	119510000	207450000	106760000	100690000	48253000	24620000	23633000	280100000	165290000	114810000	19162	707	18155	117461;117462;117463;117464;117465;117466;117467	158932;158933;158934;158935;158936;158937;158938;158939;158940;158941;158942;158943;158944;158945;158946;158947;158948;158949	158944			18	
GIIWGEDTLMEYLENPK	1	Unmodified	2006.9659	0.96592926	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		8	4						6	3	3	6	6	99.832	96.873	2;3	6.6938E-209	88526	160511_QHF_FH_JSI12i_3	393.33	371.57			1.0421	1.0125	9.8687	18	3	Median	1.2862	1.0941	4.5031	3	0	Plateau	0.75584	0.99565	9.9062	3	0	Plateau	1.0561	0.99855	8.0605	6	2	Plateau	1.0446	1.0729	12.228	6	1	Median	7031400000	3443600000	3587800000	730750000	339820000	390930000	1193200000	650130000	543060000	2116600000	1003200000	1113400000	2990900000	1450500000	1540400000	19163	2143	18156	117468;117469;117470;117471;117472;117473;117474;117475;117476;117477;117478;117479;117480;117481;117482;117483;117484;117485	158950;158951;158952;158953;158954;158955;158956;158957;158958;158959;158960;158961;158962;158963;158964;158965;158966;158967;158968;158969;158970;158971;158972;158973;158974;158975	158968			26	
GIIWGEDTLMEYLENPKK	2	Unmodified	2135.0609	0.060892282	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.26	101.21	3	9.4717E-10	90271	160511_QHF_FH_JSI11i_3	139.88	113.41			0.80079	0.85723	11.041	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80079	0.95139	NaN	1	0	Median	0.90472	0.85723	NaN	1	0	Median	0.74622	0.76297	NaN	1	0	Median	677990000	388170000	289820000	0	0	0	93434000	56335000	37099000	323790000	173090000	150690000	260760000	158740000	102020000	19164	2143	18157	117486;117487;117488	158976;158977;158978;158979;158980	158976			5	
GIKLVVADTR	1	Acetyl (K)	1112.6554	0.65535823	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		62.794	51.878	2	0.022066	28273	160513_QHF_FH_JSI11Kac_5	60.398	30.925			0.22843	0.21805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22843	0.21805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2639500	2317800	321700	0	0	0	0	0	0	2639500	2317800	321700	0	0	0	19165	1208	18158	117489	158981	158981	1082		1	
GIKPSPAPPPYTPPTHVLQTQI	1	Unmodified	2338.2685	0.26851729	3387	Q86YQ8	CPNE8	Copine-8	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	70.079	68.997	3	0.00056051	57746	160511_QHF_FH_JSI10i_3	46.353	38.958			0.84705	0.99736	16.106	3	1	Median	1.2964	1.0495	NaN	1	0	Median	0.84705	0.99736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77549	0.77675	NaN	1	1	Median	176730000	93900000	82833000	29564000	12076000	17488000	54148000	28407000	25741000	0	0	0	93021000	53417000	39604000	19166	3387	18159	117490;117491;117492	158982;158983;158984;158985;158986	158983			5	
GIKPVTLELGGK	2	Unmodified	1210.7285	0.72852317	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	0.361		2	11							4	4	2	3	48.015	47.13	2;3	6.8916E-08	39330	160511_QHF_FH_JSI10i_3	113.24	88.985			0.86916	0.89744	11.798	10	10	Median	1.2818	1.0316	19.153	3	3	Plateau	0.75509	0.89605	2.739	3	3	Median	0.86268	0.81757	1.9803	2	2	Median	0.97146	0.99516	10.194	2	2	Median	5434500000	2594400000	2840100000	1193700000	507390000	686350000	931980000	461980000	470000000	1141900000	643170000	498760000	2166800000	981870000	1185000000	19167	1645	18160	117493;117494;117495;117496;117497;117498;117499;117500;117501;117502;117503;117504;117505	158987;158988;158989;158990;158991;158992;158993;158994;158995;158996;158997;158998;158999;159000	158992			14	
GIKPVTLELGGK	2	Acetyl (K)	1252.7391	0.73908786	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	75.841	65.2	2	0.012885	34954	160513_QHF_FH_JSI12Kac_4	54.486	31.114			0.40169	0.39508	57.784	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0227	1.2097	NaN	1	0	Median	0.40169	0.39508	NaN	1	0	Median	0.49622	0.53845	NaN	1	0	Median	12676000	7950700	4725300	0	0	0	3681200	1825100	1856100	4642800	3377000	1265700	4352100	2748600	1603500	19168	1645	18160	117506;117507;117508	159001;159002;159003;159004	159004	1653		4	
GIKVVGK	2	Acetyl (K)	741.47487	0.47487467	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.786						4	3	2		2	2	2	3	29.78	19.653	2	0.0021061	5899	160513_QHF_FH_JSI9Kac_3	108.24	43.462			0.91905	0.96118	68.476	8	1	Median	3.0573	2.5473	123.05	2	1	Median	0.64377	0.76927	12.501	2	0	Median	0.88161	0.87481	NaN	1	0	Median	0.97518	1.0561	10.974	3	0	Plateau	353210000	170770000	182430000	81665000	34259000	47406000	113480000	62451000	51028000	69427000	33155000	36272000	88637000	40910000	47727000	19169	4603	18161	117509;117510;117511;117512;117513;117514;117515;117516;117517	159005;159006;159007;159008;159009;159010;159011;159012;159013;159014;159015;159016;159017;159018;159019	159011	3191		15	
GIKYMTKAGKFQVRT	3	2 Acetyl (K)	1810.9764	0.97637479	1808	P53677	AP3M2	AP-3 complex subunit mu-2	yes	yes	2	0	0	4	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	85.281	76.157	3	0.018454	41805	160513_QHF_FH_JSI9Kac_6	37.55	10.521			1.25	0.93924	41.256	3	0	Plateau	0.76043	0.66214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3855	1.3323	NaN	1	0	Median	1.25	1.3726	NaN	1	0	Median	383590000	208300000	175290000	263800000	159070000	104740000	0	0	0	106480000	42401000	64077000	13305000	6836200	6469300	19170	1808	18162	117518;117519;117520	159020;159021	159020	1828;1829;1830		2	
GILAADESTGSIAK	1	Unmodified	1331.6933	0.69325988	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.12	10	4	4	2	3	7	4	4	5	9	12	10	12	45.46	39.543	2;3	4.9492E-133	6712	160513_QHF_FH_JSI9Kac_3	283.52	238.36			0.97753	0.9941	15.721	40	8	Median	1.0995	0.95965	8.1844	8	0	Median	0.85305	1.0054	11.933	12	4	Median	1.1008	1.0587	17.004	9	1	Median	0.93096	1.0303	22.087	11	3	Median	68888000000	33187000000	35701000000	10135000000	4426400000	5709000000	22505000000	11034000000	11470000000	13714000000	6475400000	7238600000	22534000000	11250000000	11283000000	19171	803	18163	117521;117522;117523;117524;117525;117526;117527;117528;117529;117530;117531;117532;117533;117534;117535;117536;117537;117538;117539;117540;117541;117542;117543;117544;117545;117546;117547;117548;117549;117550;117551;117552;117553;117554;117555;117556;117557;117558;117559;117560;117561;117562;117563	159022;159023;159024;159025;159026;159027;159028;159029;159030;159031;159032;159033;159034;159035;159036;159037;159038;159039;159040;159041;159042;159043;159044;159045;159046;159047;159048;159049;159050;159051;159052;159053;159054;159055;159056;159057;159058;159059;159060;159061;159062;159063;159064;159065;159066;159067;159068;159069;159070;159071;159072;159073;159074;159075;159076;159077;159078;159079;159080;159081;159082;159083;159084;159085;159086;159087;159088;159089;159090;159091;159092;159093;159094;159095;159096;159097	159055			74	
GILAADESTGSIAKR	1	Unmodified	1487.7944	0.79437091	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.71	4.2			6					1		3	2	1	1	36.532	34.239	2;3	1.5231E-30	27883	160511_QHF_FH_JSI9i_3	154.65	124.17			0.96115	0.81571	44.206	7	1	Median	0.97319	0.81571	1.9982	3	1	Median	0.42406	0.48186	21.487	2	0	Median	0.87988	0.82474	NaN	1	0	Median	1.7507	1.7509	NaN	1	0	Median	530540000	307450000	223090000	169910000	92783000	77127000	213230000	135100000	78131000	105070000	60209000	44862000	42334000	19366000	22967000	19172	803	18164	117564;117565;117566;117567;117568;117569;117570	159098;159099;159100;159101;159102;159103;159104;159105;159106	159106			9	
GILAADESTGSIAKR	1	Acetyl (K)	1529.8049	0.80493559	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	0.775						3	4	3		1	3	3	3	57.239	46.924	2;3	4.7755E-119	26253	160513_QHF_FH_JSI12Kac_4	262.93	216.47			0.87666	1.0041	90.788	9	1	Median	1.2912	1.0991	NaN	1	0	Median	0.9537	1.1427	8.6887	3	0	Plateau	0.7687	0.72874	142.31	3	1	Median	0.97005	1.0447	5.6089	2	0	Median	239060000	117680000	121380000	4970600	2231200	2739400	98325000	52785000	45540000	15472000	12858000	2613300	120290000	49811000	70484000	19173	803	18164	117571;117572;117573;117574;117575;117576;117577;117578;117579;117580	159107;159108;159109;159110;159111;159112;159113;159114;159115;159116;159117;159118;159119;159120;159121;159122;159123;159124	159117	432		18	
GILAADESVGSMAK	1	Unmodified	1347.6704	0.67041595	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		51.199	50.429	2	4.7271E-24	43434	160511_QHF_FH_JSI11i_2	156.58	109.38			0.96743	0.85379	13.526	4	2	Median	1.0281	0.85379	0.88319	2	1	Median	0.93096	1.0802	NaN	1	1	Median	0.82278	0.79119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	470450000	250880000	219560000	162900000	77831000	85067000	150540000	78067000	72472000	157010000	94987000	62025000	0	0	0	19174	944	18165	117581;117582;117583;117584;117585;117586	159125;159126;159127;159128;159129;159130	159129			6	
GILAAFLTQK	1	Unmodified	1060.6281	0.62808085	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		81.439	72.125	2	0.014238	39657	160513_QHF_FH_JSI11Kac_6	85.676	50.38			1.0408	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0408	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42678000	19270000	23409000	0	0	0	0	0	0	42678000	19270000	23409000	0	0	0	19175	5134	18166	117587	159131	159131			0	
GILADEDSSRPVWLK	1	Unmodified	1684.8784	0.87843489	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	0.492		7	10							4	7	4	2	63.584	62.736	2;3	1.9959E-40	52612	160511_QHF_FH_JSI10i_3	220.23	171.79			0.78579	0.79126	25.895	15	2	Median	1.2216	1.0001	32.939	4	0	Median	0.58497	0.71583	25.18	5	2	Median	0.6889	0.66722	26.896	4	0	Median	0.75228	0.76377	8.4324	2	0	Median	12309000000	6979700000	5329000000	1860700000	839470000	1021300000	4933900000	2982700000	1951200000	4519100000	2623200000	1895800000	995040000	534350000	460690000	19176	1650	18167	117588;117589;117590;117591;117592;117593;117594;117595;117596;117597;117598;117599;117600;117601;117602;117603;117604	159132;159133;159134;159135;159136;159137;159138;159139;159140;159141;159142;159143;159144;159145;159146;159147;159148;159149;159150;159151;159152;159153;159154;159155;159156;159157;159158;159159;159160;159161;159162;159163;159164;159165;159166;159167;159168;159169;159170;159171;159172;159173;159174	159143			43	
GILCGLTQFTNK	1	Unmodified	1350.6966	0.69657112	2534	Q14410	GK2	Glycerol kinase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	67.424	67.128	2	3.5006E-07	59770	160511_QHF_FH_JSI11i_3	110.53	0			0.98918	1.0544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98918	1.0544	NaN	1	0	Median	18933000	9923000	9010000	0	0	0	0	0	0	0	0	0	18933000	9923000	9010000	19177	2534	18168	117605;117606	159175;159176	159175			2	
GILDALLQTAR	0	Unmodified	1169.6768	0.67682195	2814	Q3KQZ1	SLC25A35	Solute carrier family 25 member 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	96.811	96.501	2	6.4424E-05	80181	160511_QHF_FH_JSI10i_3	93.111	59.314			1.0112	1.0764	8.7783	4	0	Linear	1.178	0.96706	NaN	1	0	Median	0.95996	1.0583	NaN	1	0	Median	1.0652	1.0109	NaN	1	0	Median	0.83815	0.8624	NaN	1	0	Median	92392000	52291000	40102000	20559000	9689000	10870000	30117000	21368000	8749800	24810000	11583000	13226000	16906000	9650600	7255300	19178	2814	18169	117607;117608;117609;117610	159177;159178;159179;159180;159181;159182	159179			5	
GILEQGWQADSTTR	0	Unmodified	1560.7532	0.75323437	4297	Q99627	COPS8	COP9 signalosome complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.1		3	3				2	4		2	3	4	3	52.464	48.484	2	2.2602E-21	41627	160511_QHF_FH_JSI12i_3	208.79	173.25			1.1939	1.1047	27.772	9	7	Median	1.3729	1.1294	22.51	2	1	Median	1.4617	1.7997	NaN	1	1	Median	1.1647	1.0785	14.137	3	3	Plateau	1.1939	1.2781	29.898	3	2	Median	1148800000	553720000	595080000	248350000	118760000	129590000	221910000	113240000	108660000	283190000	131280000	151900000	395360000	190430000	204920000	19179	4297	18170	117611;117612;117613;117614;117615;117616;117617;117618;117619;117620;117621;117622	159183;159184;159185;159186;159187;159188;159189;159190;159191;159192;159193;159194;159195;159196	159195			14	
GILEYLTVAEVVETMEDLVTYTK	1	Unmodified	2615.3292	0.3291878	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	105.4	98.439	2;3	0	58984	160513_QHF_FH_JSI10Kac_6	376.71	342.02			0.78845	0.93231	4.4042	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.77521	0.91252	4.6621	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80251	0.8675	NaN	1	1	Median	657820000	420780000	237040000	0	0	0	633790000	407770000	226020000	0	0	0	24026000	13011000	11015000	19180	1139	18171	117623;117624;117625	159197;159198;159199;159200	159198			4	
GILFLNK	1	Unmodified	803.49052	0.49052473	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			7							2	2	1	2	62.984	62.042	2	0.002611	51566	160511_QHF_FH_JSI12i_3	109.88	26.652			1.033	1.0288	16.534	7	1	Median	1.3083	1.0651	4.9047	2	1	Median	0.73399	0.84099	21.207	2	0	Median	1.0142	0.92777	NaN	1	0	Median	1.1114	1.133	11.026	2	0	Median	319560000	144580000	174970000	85035000	38132000	46903000	78873000	39664000	39208000	32009000	15197000	16812000	123640000	51591000	72048000	19181	2912	18172	117626;117627;117628;117629;117630;117631;117632	159201;159202;159203;159204	159203			4	
GILFVGSGVSGGEEGAR	0	Unmodified	1590.8002	0.80018457	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.3	2	7	8				2	5	4	5	10	8	5	66.036	61.395	2;3	1.1867E-97	54556	160511_QHF_FH_JSI11i_3	255.31	228.19			0.98477	1	14.122	26	8	Median	1.3292	1.1181	12.099	5	1	Median	0.89561	1.0691	19.748	8	3	Median	0.98477	0.97346	4.129	8	3	Median	0.9654	0.98351	13.874	5	1	Median	6656400000	3299600000	3356800000	1045000000	463140000	581850000	1692300000	886260000	806040000	2681600000	1342200000	1339400000	1237500000	608010000	629540000	19182	1764	18173	117633;117634;117635;117636;117637;117638;117639;117640;117641;117642;117643;117644;117645;117646;117647;117648;117649;117650;117651;117652;117653;117654;117655;117656;117657;117658;117659;117660	159205;159206;159207;159208;159209;159210;159211;159212;159213;159214;159215;159216;159217;159218;159219;159220;159221;159222;159223;159224;159225;159226;159227;159228;159229;159230;159231;159232;159233;159234;159235;159236;159237;159238;159239;159240;159241;159242;159243;159244;159245;159246;159247;159248	159206			44	
GILGTLNK	1	Unmodified	814.49125	0.49125301	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	37.902	37.12	2	3.893E-15	30241	160511_QHF_FH_JSI9i_3	178.84	61.143			1.0284	1.0111	22.013	4	0	Median	1.2854	1.0315	NaN	1	0	Median	1.0826	1.2431	NaN	1	0	Median	0.77575	0.73079	NaN	1	0	Median	0.97702	0.9911	NaN	1	0	Median	898160000	436620000	461540000	231650000	92224000	139430000	176710000	100280000	76435000	162070000	84875000	77199000	327720000	159240000	168480000	19183	8	18174	117661;117662;117663;117664	159249;159250;159251;159252;159253;159254;159255	159253			7	
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	1	Unmodified	4035.8875	0.88750261	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.07	2.51		22	33						2	19	6	15	17	90.921	90.387	4;5	0	39329	160513_QHF_FH_JSI9Kac_6	382.99	357.93			1.0207	0.99782	38.451	54	26	Median	0.93492	0.80235	24.902	18	7	Median	0.70232	0.85448	9.7388	5	2	Median	1.9821	1.8905	18.518	14	8	Median	1.0039	1.0319	11.192	17	9	Median	5437100000	2535500000	2901600000	1469200000	791590000	677630000	195970000	111040000	84934000	1254000000	353250000	900710000	2517900000	1279600000	1238300000	19184	812	18175	117665;117666;117667;117668;117669;117670;117671;117672;117673;117674;117675;117676;117677;117678;117679;117680;117681;117682;117683;117684;117685;117686;117687;117688;117689;117690;117691;117692;117693;117694;117695;117696;117697;117698;117699;117700;117701;117702;117703;117704;117705;117706;117707;117708;117709;117710;117711;117712;117713;117714;117715;117716;117717;117718;117719;117720;117721	159256;159257;159258;159259;159260;159261;159262;159263;159264;159265;159266;159267;159268;159269;159270;159271;159272;159273;159274;159275;159276;159277;159278;159279;159280;159281;159282;159283;159284;159285;159286;159287;159288;159289;159290;159291;159292;159293;159294;159295;159296;159297;159298;159299;159300;159301;159302;159303;159304;159305;159306;159307;159308;159309;159310;159311;159312;159313;159314;159315;159316;159317;159318;159319;159320;159321;159322;159323;159324;159325;159326;159327;159328;159329;159330;159331;159332;159333;159334;159335;159336;159337;159338;159339;159340	159311			83	
GILHLSPDVYQEMEASR	0	Unmodified	1943.9411	0.9411115	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	72.839	72.261	3	6.6998E-06	64471	160511_QHF_FH_JSI11i_3	93.424	91.701			1.0033	0.87477	30.782	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3146	1.5479	NaN	1	0	Median	1.2363	1.1661	NaN	1	1	Median	0.81417	0.83686	NaN	1	1	Median	140980000	75714000	65271000	0	0	0	15770000	8926200	6843800	59927000	27949000	31977000	65288000	38838000	26450000	19185	5004	18176	117722;117723;117724	159341;159342;159343	159341			2	
GILIGIQQSFRPR	0	Unmodified	1483.8623	0.86233131	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	72.516	63.842	2;3	4.9815E-61	35053	160513_QHF_FH_JSI10Kac_6	222.28	182.21			0.96478	1.0675	11.62	7	0	Median	1.1833	1.0205	9.2056	2	0	Median	0.92018	1.1036	4.708	2	0	Median	1.3121	1.2485	NaN	1	0	Median	0.87736	0.94657	11.07	2	0	Median	1170800000	577310000	593480000	340500000	139170000	201330000	688340000	370650000	317690000	49449000	20995000	28453000	92505000	46501000	46004000	19186	1372	18177	117725;117726;117727;117728;117729;117730;117731	159344;159345;159346;159347;159348;159349;159350;159351;159352;159353	159353			10	
GILLFGPPGTGK	1	Unmodified	1155.6652	0.66519463	507;5432;3123	O75351;Q9UN37;Q6PIW4	VPS4B;VPS4A;FIGNL1	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A;Fidgetin-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	4.64		2	3					1		2	2	1	1	75.75	74.704	2	7.0357E-06	64738	160511_QHF_FH_JSI12i_3	123.75	115.22			0.77408	0.78504	31.526	3	3	Plateau	0.681	0.55927	NaN	1	1	Median	0.36731	0.41815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77408	0.78504	NaN	1	1	Median	1903900000	1300800000	603150000	336540000	204900000	131640000	489390000	358720000	130660000	0	0	0	1078000000	737140000	340850000	19187	507;5432;3123	18178	117732;117733;117734;117735;117736;117737	159354;159355;159356;159357;159358;159359	159359			6	
GILLFGTK	1	Unmodified	847.51674	0.51673948	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.11	6.46	1	4	4				2	4	4	4	6	5	4	70.528	64.674	2	2.0404E-05	54514	160511_QHF_FH_JSI10i_3	139.28	47.695			1.0499	1.0624	13.254	18	0	Median	1.2182	1.0502	6.1562	4	0	Median	0.94697	1.086	7.969	5	0	Median	1.0957	1.0195	9.4264	5	0	Median	1.1176	1.1712	26.322	4	0	Median	4987500000	2406400000	2581200000	980260000	436060000	544200000	1097500000	538050000	559430000	1435000000	758480000	676500000	1474800000	673760000	801040000	19188	1675	18179	117738;117739;117740;117741;117742;117743;117744;117745;117746;117747;117748;117749;117750;117751;117752;117753;117754;117755;117756	159360;159361;159362;159363;159364;159365;159366;159367;159368;159369;159370;159371;159372;159373;159374;159375;159376;159377;159378;159379;159380;159381;159382;159383;159384;159385;159386;159387;159388;159389;159390;159391;159392;159393;159394;159395;159396;159397;159398;159399;159400;159401;159402;159403;159404;159405;159406;159407;159408;159409	159370			50	
GILLQLFGGTR	0	Unmodified	1173.687	0.68699271	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		85.854	80.153	2	5.0708E-08	44914	160513_QHF_FH_JSI10Kac_6	118.18	96.091			0.88186	1.0384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88186	1.0384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102570000	47695000	54875000	0	0	0	102570000	47695000	54875000	0	0	0	0	0	0	19189	1409	18180	117757;117758	159410;159411;159412	159411			3	
GILLQLFGGTRK	1	Unmodified	1301.782	0.78195573	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	79.657	71.374	3	1.2333E-16	39520	160513_QHF_FH_JSI10Kac_6	143.17	105.93			0.93289	0.9527	4.8963	4	0	Median	1.1627	1.0027	NaN	1	0	Median	0.77742	0.92325	NaN	1	0	Median	0.95375	0.90532	NaN	1	0	Median	0.91248	0.9831	NaN	1	0	Median	228070000	117250000	110820000	74181000	39083000	35099000	121050000	60948000	60101000	9824700	5447900	4376800	23015000	11774000	11241000	19190	1409	18181	117759;117760;117761;117762	159413;159414;159415;159416;159417;159418	159418			6	
GILLVGPPGTGK	1	Unmodified	1107.6652	0.66519463	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.22		4	2					4		2	2	4	2	64.234	60.239	2	4.7739E-05	53541	160511_QHF_FH_JSI11i_3	99.53	96.122			1.0522	1.008	13.537	9	1	Median	1.0931	0.90548	7.2361	2	0	Median	0.84972	0.99678	10.859	2	0	Median	1.1997	1.1735	9.3925	3	1	Median	1.0481	1.1097	20.954	2	0	Median	437950000	208710000	229240000	64568000	32222000	32346000	67571000	35062000	32509000	141620000	62123000	79502000	164180000	79305000	84879000	19191	4261	18182	117763;117764;117765;117766;117767;117768;117769;117770;117771;117772	159419;159420;159421;159422;159423;159424;159425	159419			6	
GILLYGPPGCGK	1	Unmodified	1230.6431	0.64307898	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.019	56.772	2	0.00026169	48833	160511_QHF_FH_JSI12i_3	92.062	55.369			1.6482	1.6837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6482	1.6837	NaN	1	1	Median	68831000	27870000	40961000	0	0	0	0	0	0	0	0	0	68831000	27870000	40961000	19192	1586	18183	117773;117774	159426;159427	159427			2	
GILNGQK	1	Unmodified	728.41809	0.41808807	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4		4			1					1	1	1	2	10.031	8.1992	2	0.02555	6848	160511_QHF_FH_JSI9i_2	54.525	6.2834			0.95518	0.95384	13.039	5	1	Median	1.1246	0.95384	NaN	1	0	Median	0.76677	0.92869	NaN	1	0	Median	0.95518	0.95647	NaN	1	0	Median	1.0005	1.0828	21.369	2	1	Median	678980000	358360000	320620000	163890000	84050000	79836000	116160000	65567000	50589000	236970000	115460000	121510000	161970000	93288000	68680000	19193	5330	18184	117775;117776;117777;117778;117779	159428;159429;159430;159431;159432	159429			5	
GILNKLTPEK	2	Acetyl (K)	1153.6707	0.67067394	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	1	0	0	1			By MS/MS	By matching	14.5	0.5							1	1				1	1	69.63	58.858	2	2.4942E-06	31468	160513_QHF_FH_JSI11Kac_5	125.48	72.313			0.72984	0.77114	138.37	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29801	0.28987	NaN	1	0	Median	1.7874	2.0515	NaN	1	0	Median	8044400	5858900	2185500	0	0	0	0	0	0	7175100	5489100	1686000	869290	369810	499480	19194	2084	18185	117780;117781	159433	159433	2170		1	
GILQELFLNK	1	Unmodified	1173.6758	0.67575932	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	3	1	1	91.584	90.943	2	1.0729E-44	74321	160511_QHF_FH_JSI9i_3	224.24	212.01			1.1074	1.0409	25.953	5	1	Median	1.1074	0.91928	NaN	1	0	Median	0.9999	1.1344	48.964	2	1	Median	1.1199	1.0409	NaN	1	0	Median	1.0416	1.0547	NaN	1	0	Median	429120000	191760000	237360000	104930000	42696000	62235000	106850000	52991000	53855000	78640000	37250000	41389000	138700000	58822000	79878000	19195	4206	18186	117782;117783;117784;117785;117786;117787	159434;159435;159436;159437;159438;159439;159440;159441;159442;159443;159444;159445;159446;159447	159442			14	
GILQSLK	1	Unmodified	757.46979	0.46978929	5470	Q9UPW5	AGTPBP1	Cytosolic carboxypeptidase 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			37.867	36.392	2	0.017066	30356	160511_QHF_FH_JSI10i_3	55.504	18.476			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19196	5470	18187	117788	159448	159448			1	
GILSGTSDLLLTFDEAEVRK	1	Unmodified	2163.1423	0.14231373	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	1	3	2	2	98.635	97.865	2;3	9.0548E-55	89166	160511_QHF_FH_JSI11i_3	214.19	194.37			0.89453	0.96005	7.4599	8	1	Median	1.1417	0.95262	NaN	1	0	Median	0.86506	0.96754	7.0235	3	0	Median	1.0289	1.0046	4.4755	2	0	Median	0.83876	0.87738	4.6936	2	1	Median	1255600000	683430000	572180000	68163000	31441000	36723000	333490000	186020000	147470000	460860000	243910000	216950000	393090000	222060000	171030000	19197	1139	18188	117789;117790;117791;117792;117793;117794;117795;117796	159449;159450;159451;159452;159453;159454;159455;159456;159457;159458;159459;159460;159461;159462	159450			14	
GILSNSWK	1	Unmodified	903.48142	0.48141661	2850	Q53F19	C17orf85	Uncharacterized protein C17orf85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		41.461	40.434	2	0.00027886	32992	160511_QHF_FH_JSI9i_3	113.89	75.651			1.0466	0.85164	73.24	3	1	Plateau	1.0466	0.85164	NaN	1	0	Median	0.8119	0.93788	NaN	1	0	Median	0.27245	0.25204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	261120000	162080000	99047000	80774000	39651000	41123000	66056000	36930000	29126000	114290000	85496000	28799000	0	0	0	19198	2850	18189	117797;117798;117799	159463;159464;159465;159466	159466			4	
GILSSHPK	1	Unmodified	837.47085	0.47085192	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	6	2	2	3	10.27	9.3587	2;3	0.00057047	6869	160511_QHF_FH_JSI12i_3	86.833	49.274			1.1076	0.93429	20.52	7	3	Median	1.1253	0.91789	25.877	3	1	Plateau	0.83075	0.93429	NaN	1	0	Median	0.90866	0.86867	NaN	1	0	Median	1.012	1.0462	26.427	2	2	Median	3880800000	1174500000	2706300000	744460000	172740000	571710000	775490000	250050000	525430000	771900000	265860000	506040000	1589000000	485800000	1103200000	19199	5090	18190	117800;117801;117802;117803;117804;117805;117806;117807;117808;117809;117810;117811;117812	159467;159468;159469;159470;159471;159472;159473;159474;159475;159476;159477;159478;159479;159480;159481	159480			15	
GILSSHPKYGSIPK	2	Acetyl (K)	1524.83	0.83002813	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									4		1	2	1	54.803	45.334	2;3	0.00020145	24592	160513_QHF_FH_JSI11Kac_6	81.311	61.204			0.39835	0.41531	80.294	3	0	Median	NaN	NaN	NaN	0	0	Median	1.046	1.2075	NaN	1	0	Median	0.25661	0.2505	NaN	1	0	Median	0.39835	0.41531	NaN	1	0	Median	56973000	41985000	14988000	0	0	0	14565000	7358600	7206300	35261000	29656000	5605200	7147000	4970800	2176300	19200	5090	18191	117813;117814;117815;117816	159482;159483;159484	159482	3308		2	
GILTLKYPIEHGIITNWDDMEK	2	Acetyl (K)	2627.3305	0.3305252	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		91.615	84.069	3	5.8626E-22	48581	160513_QHF_FH_JSI10Kac_6	140.64	123.05			0.42651	0.45206	107.83	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82543	0.96904	NaN	1	0	Median	0.22038	0.21089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	581850000	462510000	119340000	0	0	0	103770000	65909000	37858000	478080000	396600000	81478000	0	0	0	19201	2015;2070	18192	117817;117818	159485;159486;159487	159487	2046;2141		3	
GILTLKYPIEHGIITNWDDMEK	2	Acetyl (K);Oxidation (M)	2643.3254	0.32543982	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	1	1			By MS/MS		16	0									1			1		89.389	80.051	3	0.00016137	44735	160513_QHF_FH_JSI11Kac_6	101.71	77.158			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57271000	57271000	0	0	0	0	0	0	0	57271000	57271000	0	0	0	0	19202	2015;2070	18192	117819	159488	159488	2046;2141	1671;1729	1	
GILTLKYPIEHGIVTNWDDMEK	2	Acetyl (K)	2613.3149	0.31487514	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	1	0	0	1			By MS/MS		16	0									1			1		92.056	82.684	3	2.0835E-05	46466	160513_QHF_FH_JSI11Kac_6	116.48	88.869			1.4507	1.3705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4507	1.3705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64152000	31379000	32773000	0	0	0	0	0	0	64152000	31379000	32773000	0	0	0	19203	1916;2062	18193	117820	159489	159489	1917		1	
GILTVDELLAIR	0	Unmodified	1311.7762	0.77620165	1028	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	2	2	1	2	98.062	95.462	2	5.3919E-53	87006	160511_QHF_FH_JSI12i_2	213.31	162.43			0.89423	0.97087	22.226	6	1	Median	0.82588	0.70438	NaN	1	0	Median	0.85613	1.0342	22.174	2	0	Median	1.1706	1.1815	NaN	1	0	Median	0.84212	0.91882	21.026	2	1	Median	1120600000	575500000	545130000	149000000	81462000	67537000	312420000	176030000	136390000	375280000	167700000	207580000	283930000	150300000	133620000	19204	1028	18194	117821;117822;117823;117824;117825;117826;117827	159490;159491;159492;159493;159494;159495;159496;159497;159498;159499;159500;159501	159490			12	
GIMEEDEACGR	0	Unmodified	1265.5016	0.50163606	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	21.189	20.873	2	5.6326E-10	18246	160511_QHF_FH_JSI12i_1	138.66	136.05			0.82973	0.84472	30.58	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7014	0.68046	NaN	1	1	Median	0.98154	1.0486	NaN	1	0	Median	63492000	35649000	27843000	0	0	0	0	0	0	26160000	16398000	9761400	37333000	19251000	18082000	19205	1065	18195	117828;117829;117830	159502;159503;159504;159505	159505			4	
GIMGMFASK	1	Unmodified	940.45104	0.45104446	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.912	57.078	2	6.2778E-08	46925	160511_QHF_FH_JSI9i_3	141.39	127.23			0.96828	0.89237	7.2727	4	0	Median	1.1059	0.88801	NaN	1	0	Median	0.78458	0.89073	NaN	1	0	Median	1.0757	1.0303	NaN	1	0	Median	0.87156	0.894	NaN	1	0	Median	838390000	416050000	422340000	227300000	90320000	136980000	163590000	89730000	73862000	179610000	97270000	82336000	267890000	138730000	129160000	19206	2618	18196	117831;117832;117833;117834	159506;159507;159508;159509;159510;159511;159512;159513	159510			8	
GIMGMFASKAAAK	2	Acetyl (K)	1323.6679	0.66791353	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	1	0	0	1	By MS/MS			By MS/MS	16	0									2	1			1	77.093	67.651	2	6.7334E-06	35588	160513_QHF_FH_JSI12Kac_6	110.39	83.272			1.954	2.1114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.954	2.1114	NaN	1	1	Median	15871000	5034200	10837000	0	0	0	0	0	0	0	0	0	15871000	5034200	10837000	19207	2618	18197	117835;117836	159514;159515	159515	2583		2	
GIMQLVGQAEPESVLLVHGEAK	1	Unmodified	2304.2148	0.21476716	2959	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	89.805	89.761	3	4.2902E-06	77905	160511_QHF_FH_JSI12i_3	84.181	76.377			0.88202	0.8582	13.297	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0134	0.94281	NaN	1	0	Median	0.76766	0.78119	NaN	1	1	Median	93768000	48616000	45153000	0	0	0	0	0	0	67753000	35116000	32638000	26015000	13500000	12515000	19208	2959	18198	117837;117838	159516;159517	159517			2	
GINGVSPK	1	Unmodified	770.42865	0.42865276	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.07	4	4	1			3	4	1		3	5	3	6	15.472	11.95	2	0.00018357	10469	160511_QHF_FH_JSI10i_1	121.99	10.982			0.98321	1.0461	22.505	15	6	Median	1.3646	1.1402	26.877	3	0	Plateau	0.96491	1.1349	13.858	4	2	Median	0.91212	0.92114	12.389	3	1	Plateau	0.95216	1.0461	30.249	5	3	Median	5865500000	2867900000	2997600000	1181900000	491670000	690260000	1438100000	744810000	693310000	1634300000	819080000	815170000	1611200000	812360000	798830000	19209	1138	18199	117839;117840;117841;117842;117843;117844;117845;117846;117847;117848;117849;117850;117851;117852;117853;117854;117855	159518;159519;159520;159521;159522;159523;159524;159525;159526;159527;159528;159529;159530;159531;159532;159533;159534;159535;159536;159537;159538;159539;159540;159541;159542	159527			25	
GINHLLK	1	Unmodified	793.48102	0.48102268	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			19.641	18.439	2	0.0056421	14836	160511_QHF_FH_JSI9i_3	114.54	49.763			1.7912	1.4786	NaN	1	1	Median	1.7912	1.4786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69152000	32028000	37124000	69152000	32028000	37124000	0	0	0	0	0	0	0	0	0	19210	1669	18200	117856;117857	159543;159544	159544			2	
GINSSNVENQLQATQAAR	0	Unmodified	1899.9399	0.93986594	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.84	3.88	10	5	2				2			3	6	6	4	45.894	44.641	2;3	0	40400	160511_QHF_FH_JSI11i_1	465.37	434.19			0.98252	0.99881	14.071	17	6	Median	0.93215	0.77517	17.76	3	1	Plateau	0.69916	0.82368	5.0774	4	2	Median	1.0394	1.0139	9.3921	6	2	Median	0.99679	1.0401	11.811	4	1	Median	2232400000	1197800000	1034600000	290570000	138480000	152090000	676960000	413220000	263740000	652970000	349780000	303190000	611870000	296320000	315550000	19211	1766	18201	117858;117859;117860;117861;117862;117863;117864;117865;117866;117867;117868;117869;117870;117871;117872;117873;117874;117875;117876	159545;159546;159547;159548;159549;159550;159551;159552;159553;159554;159555;159556;159557;159558;159559;159560;159561;159562;159563;159564;159565;159566;159567;159568;159569;159570;159571;159572	159548			27	
GINSSNVENQLQATQAARK	1	Unmodified	2028.0348	0.034828962	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			40.305	39.048	3	6.6552E-11	31802	160511_QHF_FH_JSI9i_3	129.46	107.31			1.0823	1.1676	18.207	4	0	Median	1.2021	1.0046	17.512	2	0	Median	1.0789	1.2826	9.5301	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	229830000	119250000	110580000	119040000	63996000	55042000	110800000	55253000	55542000	0	0	0	0	0	0	19212	1766	18202	117877;117878;117879;117880	159573;159574;159575;159576;159577;159578;159579;159580;159581	159577			9	
GINTFTLLNFLINSK	1	Unmodified	1693.9403	0.94030686	5131	Q9NYP3	DONSON	Protein downstream neighbor of Son	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.538	92.817	3	0.00010728	54317	160513_QHF_FH_JSI10Kac_6	131.24	108.23			0.16271	0.19556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.16271	0.19556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143760000	127320000	16441000	0	0	0	143760000	127320000	16441000	0	0	0	0	0	0	19213	5131	18203	117881	159582	159582			1	
GINTLVTYDMVPEPK	1	Unmodified	1675.8491	0.84910859	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.698	8	9	3							5	6	5	4	78.256	77.527	2;3	4.6537E-52	70438	160511_QHF_FH_JSI10i_1	220.9	202.15			0.93008	0.9218	11.102	18	5	Median	1.0763	0.87492	7.0028	5	1	Median	0.82103	0.97697	7.0535	5	1	Median	0.83292	0.94184	12.645	4	2	Linear	0.94493	1.0082	9.5678	4	1	Median	4127200000	2165800000	1961500000	799300000	371710000	427580000	1370700000	736250000	634460000	1057900000	590900000	466980000	899350000	466910000	432450000	19214	1179	18204	117882;117883;117884;117885;117886;117887;117888;117889;117890;117891;117892;117893;117894;117895;117896;117897;117898;117899;117900;117901	159583;159584;159585;159586;159587;159588;159589;159590;159591;159592;159593;159594;159595;159596;159597;159598;159599;159600;159601;159602;159603;159604;159605;159606;159607;159608;159609;159610;159611;159612;159613;159614;159615;159616;159617;159618;159619;159620;159621;159622;159623;159624;159625;159626;159627;159628;159629;159630;159631;159632;159633;159634;159635;159636	159609			54	
GINTLVTYDMVPEPK	1	Oxidation (M)	1691.844	0.84402321	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	1	3	66.557	65.997	2	5.8913E-16	60075	160511_QHF_FH_JSI12i_1	116.54	108.23			1.2867	1.275	19.491	6	4	Median	1.3376	1.0948	NaN	1	1	Median	1.2264	1.4125	14.699	2	2	Median	1.11	1.0686	NaN	1	0	Median	1.4222	1.4936	22.151	2	1	Median	184770000	81125000	103650000	24221000	7526900	16694000	54722000	27639000	27083000	48010000	23040000	24970000	57819000	22920000	34899000	19215	1179	18204	117902;117903;117904;117905;117906;117907;117908;117909	159637;159638;159639;159640;159641;159642;159643;159644;159645	159641		806	9	
GINVALANGK	1	Unmodified	955.54508	0.5450795	3833	Q92520	FAM3C	Protein FAM3C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.222	33.885	2	0.0014368	28808	160511_QHF_FH_JSI12i_2	65.88	29.179			0.89131	0.97407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89131	0.97407	NaN	1	0	Median	55921000	34525000	21396000	0	0	0	0	0	0	0	0	0	55921000	34525000	21396000	19216	3833	18205	117910	159646	159646			1	
GIPAPEEER	0	Unmodified	996.48762	0.4876242	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	22.003	21.476	2	0.00056389	18359	160511_QHF_FH_JSI9i_1	78.334	67.92			1.1469	0.88994	1.8808	4	0	Linear	1.1263	0.90103	NaN	1	0	Median	0.74436	0.86239	NaN	1	0	Median	0.90503	0.88794	NaN	1	0	Median	0.87608	0.89194	NaN	1	0	Median	774920000	405080000	369850000	245260000	115370000	129880000	163240000	94866000	68373000	190210000	96679000	93529000	176220000	98156000	78067000	19217	694	18206	117911;117912;117913;117914	159647;159648;159649	159649			3	
GIPAPEEERTR	0	Unmodified	1253.6364	0.6364137	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.2	0.4		4	1							1	1	1	2	17.885	17.31	3	9.4923E-05	14649	160511_QHF_FH_JSI10i_2	63.944	44.673			1.0343	1.0236	9.3346	5	0	Median	1.106	0.94854	NaN	1	0	Median	0.79374	0.95599	NaN	1	0	Median	1.1367	1.1643	NaN	1	0	Median	1.0126	1.0735	6.7377	2	0	Median	499840000	271740000	228100000	109010000	51568000	57438000	156280000	99026000	57255000	96204000	37717000	58487000	138350000	83431000	54918000	19218	694	18207	117915;117916;117917;117918;117919	159650;159651;159652	159652			3	
GIPDDRDGLFDTIQR	0	Unmodified	1716.8431	0.84311201	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	1		By MS/MS			2	0		1									1			62.965	62.114	3	0.00038995	55042	160511_QHF_FH_JSI10i_2	60.474	37.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19219	3921	18208	117920	159653	159653			1	
GIPDGHR	0	Unmodified	750.37729	0.37728589	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			6.6459	6.2126	2	0.023369	4122	160511_QHF_FH_JSI9i_2	55.604	45.854			1.061	1.0758	13.281	2	0	Median	1.3766	1.1817	NaN	1	0	Median	0.81775	0.97937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84024000	37319000	46706000	41347000	17388000	23959000	42678000	19931000	22746000	0	0	0	0	0	0	19220	800	18209	117921;117922	159654;159655	159654			2	
GIPEFWFTIFR	0	Unmodified	1411.7289	0.72885752	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.45	5.31		1	3	2	1	1	1		2	1	4	1	5	99.759	94.237	2	1.2272E-29	91689	160511_QHF_FH_JSI11i_3	189.38	186.4			1.0391	1.1075	12.92	11	0	Median	1.25	1.1572	NaN	1	0	Median	0.88175	0.99765	15.961	4	0	Median	1.0251	0.99814	NaN	1	0	Median	1.042	1.1195	13.712	5	0	Median	11768000000	6069100000	5698700000	4108900000	1964000000	2144900000	6058900000	3269300000	2789600000	516020000	243760000	272260000	1083900000	592030000	491900000	19221	4309	18210	117923;117924;117925;117926;117927;117928;117929;117930;117931;117932;117933	159656;159657;159658;159659;159660;159661;159662;159663;159664;159665;159666;159667;159668;159669;159670	159656			15	
GIPEFWLTVFK	1	Unmodified	1335.7227	0.72270951	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.15		5	4	1					4	4	3	3	4	100.35	97.485	2	1.261E-18	84688	160511_QHF_FH_JSI10i_3	167.12	132.87			0.96182	0.94352	11.93	12	3	Median	1.0155	0.91327	15.333	3	2	Median	0.82695	0.95085	9.1767	3	0	Median	0.87104	0.84935	5.6412	3	1	Median	1.068	1.0908	6.3683	3	0	Median	30774000000	15469000000	15305000000	4263400000	1985900000	2277500000	5530400000	3016100000	2514400000	8692300000	4555000000	4137400000	12288000000	5912400000	6375600000	19222	1852	18211	117934;117935;117936;117937;117938;117939;117940;117941;117942;117943;117944;117945;117946;117947	159671;159672;159673;159674;159675;159676;159677;159678;159679;159680;159681;159682;159683;159684;159685;159686;159687;159688;159689;159690	159676			20	
GIPEHLMGK	1	Unmodified	980.51134	0.51133653	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		32.137	32.137	3	0.0034121	27896	160511_QHF_FH_JSI11i_3	54.416	42.203			3.1908	2.9592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1908	2.9592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15537000	3825400	11712000	0	0	0	0	0	0	15537000	3825400	11712000	0	0	0	19223	3239	18212	117948	159691	159691			1	
GIPELEQYDPPELADSSGR	0	Unmodified	2071.9698	0.96982867	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	77.578	77.1	2;3	2.1923E-10	70126	160511_QHF_FH_JSI12i_1	131.86	117.23			1.0548	1.0965	6.0777	4	0	Median	1.4208	1.1368	NaN	1	0	Median	1.0235	1.1921	NaN	1	0	Median	1.0871	1.0498	NaN	1	0	Median	1.014	1.0577	NaN	1	0	Median	220450000	108850000	111590000	41446000	18936000	22510000	50968000	22533000	28435000	79545000	42940000	36605000	48488000	24444000	24044000	19224	4157	18213	117949;117950;117951;117952;117953	159692;159693;159694;159695;159696;159697;159698;159699;159700	159694			9	
GIPFTATLASSSVNSAEEHVASTNEGREPTDSVPK	1	Unmodified	3584.7231	0.72306304	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			74.119	72.679	4	0.021862	60864	160511_QHF_FH_JSI10i_3	19.769	17.952			0.72016	0.8265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72016	0.8265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23856000	16175000	7681000	0	0	0	23856000	16175000	7681000	0	0	0	0	0	0	19225	1311	18214	117954	159701;159702;159703	159701			3	
GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSR	0	Unmodified	3403.6141	0.61412171	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	75.265	74.896	3	1.6065E-21	67901	160511_QHF_FH_JSI10i_1	90.867	85.324			0.76951	0.84107	8.015	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75976	0.89011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7794	0.79472	NaN	1	0	Median	68718000	35528000	33191000	0	0	0	36076000	19435000	16641000	0	0	0	32642000	16092000	16550000	19226	3377	18215	117955;117956;117957	159704;159705;159706;159707	159707			4	
GIPHLVTHDAR	0	Unmodified	1214.652	0.65200419	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.29		7	63						18	34	27	15	12	26.355	23.855	2;3;4	4.8244E-13	19127	160511_QHF_FH_JSI9i_3	147.2	108.41			0.92045	0.88447	21.424	79	8	Median	1.1456	0.92222	22.5	30	2	Median	0.74851	0.88314	18.002	25	2	Median	0.96066	0.90553	21.672	14	2	Median	0.75996	0.77822	18.331	10	2	Median	22001000000	10794000000	11207000000	10708000000	4665400000	6043000000	5796900000	3165700000	2631200000	3607400000	1915600000	1691900000	1888500000	1047500000	841000000	19227	2013;1204	18216	117958;117959;117960;117961;117962;117963;117964;117965;117966;117967;117968;117969;117970;117971;117972;117973;117974;117975;117976;117977;117978;117979;117980;117981;117982;117983;117984;117985;117986;117987;117988;117989;117990;117991;117992;117993;117994;117995;117996;117997;117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015;118016;118017;118018;118019;118020;118021;118022;118023;118024;118025;118026;118027;118028;118029;118030;118031;118032;118033;118034;118035;118036;118037;118038;118039;118040;118041;118042;118043;118044;118045	159708;159709;159710;159711;159712;159713;159714;159715;159716;159717;159718;159719;159720;159721;159722;159723;159724;159725;159726;159727;159728;159729;159730;159731;159732;159733;159734;159735;159736;159737;159738;159739;159740;159741;159742;159743;159744;159745;159746;159747;159748;159749;159750;159751;159752;159753;159754;159755;159756;159757;159758;159759;159760;159761;159762;159763;159764;159765;159766;159767;159768;159769;159770;159771;159772;159773;159774;159775;159776;159777;159778;159779;159780;159781;159782;159783;159784;159785;159786;159787;159788;159789;159790;159791;159792;159793;159794;159795;159796;159797;159798;159799;159800;159801;159802;159803;159804;159805;159806	159749			95	
GIPIGMLVLGNK	1	Unmodified	1210.7108	0.71076462	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	89.931	89.365	2	0.00037537	73211	160511_QHF_FH_JSI9i_3	88.948	69.677			0.94084	0.83539	20.695	4	2	Median	1.0394	0.86793	NaN	1	1	Median	0.66182	0.77772	NaN	1	0	Median	0.8516	0.80408	NaN	1	0	Median	1.1366	1.2213	NaN	1	1	Median	59834000	26635000	33199000	13827000	5975000	7851700	9082100	5004000	4078100	17219000	7376800	9842500	19706000	8279400	11427000	19228	545	18217	118046;118047;118048;118049	159807;159808;159809;159810;159811	159810			5	
GIPILSLDWLHQSR	0	Unmodified	1633.894	0.89402537	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101	100.91	3	4.7958E-07	83542	160511_QHF_FH_JSI10i_3	130.2	102.94			0.93447	0.80742	22.985	4	0	Median	0.95384	0.77695	NaN	1	0	Median	0.60731	0.71268	NaN	1	0	Median	0.9155	0.83908	NaN	1	0	Median	1.1768	1.2025	NaN	1	0	Median	270150000	127420000	142730000	56580000	26770000	29809000	53917000	30413000	23505000	91166000	45881000	45285000	68486000	24354000	44133000	19229	2557	18218	118050;118051;118052;118053	159812;159813;159814;159815;159816	159813			4	
GIPLATGDTSPEPELLPGAPLPPPK	1	Unmodified	2463.3261	0.32609175	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	96.161	95.894	3;4	1.1497E-16	86867	160511_QHF_FH_JSI10i_1	118.84	116.08			0.94293	0.96164	7.9882	6	0	Median	1.2935	1.0613	NaN	1	0	Median	0.81511	0.9512	NaN	1	0	Median	0.99453	0.97478	1.4899	2	0	Median	0.87755	0.89203	10.197	2	0	Median	451360000	230910000	220450000	107220000	43169000	64056000	106400000	62600000	43799000	148160000	78154000	70007000	89576000	46986000	42590000	19230	570	18219	118054;118055;118056;118057;118058;118059	159817;159818;159819;159820;159821;159822;159823;159824;159825;159826;159827;159828;159829;159830;159831;159832;159833;159834;159835;159836	159831			20	
GIPLDFSSSLGIIVK	1	Unmodified	1544.8814	0.881395	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	101.59	101.44	2	0.053639	87316	160511_QHF_FH_JSI12i_2	46.985	27.743			0.72725	0.7488	12.97	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82937	0.82073	NaN	1	0	Median	0.6377	0.68318	NaN	1	0	Median	96534000	50101000	46433000	0	0	0	0	0	0	54491000	26553000	27938000	42043000	23548000	18496000	19231	5161	18220	118060;118061	159837	159837			0	
GIPLESTDGER	0	Unmodified	1172.5673	0.56733108	912;159;2315	P08651;Q12857;O00712	NFIC;NFIA;NFIB	Nuclear factor 1 C-type;Nuclear factor 1 A-type;Nuclear factor 1 B-type	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	35.088	31.295	2	3.3446E-05	28159	160511_QHF_FH_JSI12i_1	98.249	59.956			1.1418	1.1098	15.217	8	3	Median	1.1561	0.95908	18.72	2	2	Median	0.9201	1.0703	7.0573	2	0	Median	1.1521	1.1027	6.3243	2	1	Median	1.2378	1.3358	6.3884	2	0	Median	1016000000	489600000	526440000	301380000	151260000	150120000	236730000	121540000	115190000	214340000	106710000	107630000	263580000	110090000	153490000	19232	912;2315;159	18221	118062;118063;118064;118065;118066;118067;118068;118069	159838;159839;159840;159841;159842;159843;159844;159845;159846	159840			9	
GIPNMLLSEEETES	0	Unmodified	1547.7025	0.70250394	5324	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	78.792	78.346	2	0.00012327	69732	160511_QHF_FH_JSI9i_1	102.06	91.83			0.98965	0.9232	8.273	5	3	Median	1.0184	0.83286	NaN	1	0	Median	0.74191	0.87978	NaN	1	0	Median	1.0354	0.99224	6.3702	2	2	Median	0.90107	0.9232	NaN	1	1	Median	624440000	321590000	302840000	91320000	41185000	50134000	133260000	78757000	54502000	302050000	142960000	159080000	97811000	58687000	39123000	19233	5324	18222	118070;118071;118072;118073;118074	159847;159848;159849;159850;159851;159852;159853	159853			7	
GIPNVLR	0	Unmodified	767.46537	0.46537261	222	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	42.621	41.92	2	0.013952	35778	160511_QHF_FH_JSI12i_3	66.994	18.752			0.93841	1.0045	11.593	4	0	Median	1.2589	1.0654	NaN	1	0	Median	0.83326	1.0103	NaN	1	0	Median	0.88593	0.81804	NaN	1	0	Median	0.99399	0.99869	NaN	1	0	Median	510470000	271440000	239030000	94676000	52256000	42420000	88101000	44884000	43217000	135560000	76168000	59393000	192130000	98134000	93997000	19234	222	18223	118075;118076;118077;118078	159854;159855;159856;159857	159856			4	
GIPSSLR	0	Unmodified	728.41809	0.41808807	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		23.997	23.997	2	0.033819	20428	160511_QHF_FH_JSI11i_3	51.787	8.6637			1.1105	1.0201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1105	1.0201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31878000	16768000	15110000	0	0	0	0	0	0	31878000	16768000	15110000	0	0	0	19235	2836	18224	118079	159858	159858			1	
GIPTYIYYFPR	0	Unmodified	1388.7129	0.71287311	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.586	75.344	2	2.5107E-10	42705	160513_QHF_FH_JSI10Kac_6	144.09	115.69			0.91338	0.92205	26.573	4	1	Median	1.2656	1.0698	NaN	1	0	Median	0.48685	0.58074	NaN	1	1	Median	0.98812	0.93853	NaN	1	0	Median	0.84429	0.90586	NaN	1	0	Median	951970000	581740000	370230000	163000000	76412000	86590000	416610000	307940000	108670000	233010000	114750000	118260000	139350000	82632000	56715000	19236	3359	18225	118080;118081;118082;118083	159859;159860;159861;159862;159863;159864	159864			6	
GIPVLVGLLDHPK	1	Unmodified	1356.8129	0.8129215	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	87.677	87.054	3	1.1298E-05	77304	160511_QHF_FH_JSI11i_3	112.51	110.44			0.86722	0.87377	49.827	8	1	Median	0.85691	0.72961	1.8033	2	0	Median	0.6846	0.80212	29.13	2	0	Median	1.8275	1.7664	78.249	2	1	Median	0.89328	0.96235	30.684	2	0	Median	203170000	98180000	104990000	28787000	14480000	14307000	28025000	15013000	13012000	67686000	30557000	37130000	78673000	38130000	40543000	19237	442	18226	118084;118085;118086;118087;118088;118089;118090;118091	159865;159866;159867;159868;159869;159870;159871;159872;159873;159874;159875;159876;159877;159878;159879;159880;159881;159882	159866			18	
GIPVLVGLLDHPKK	2	Unmodified	1484.9079	0.90788452	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	1	2	1	76.752	75.848	3;4	6.2517E-05	62908	160511_QHF_FH_JSI9i_3	101.6	89.68			0.75012	0.68252	7.7124	5	5	Median	0.83568	0.6765	1.882	2	2	Median	0.5295	0.61805	NaN	1	1	Median	0.7364	0.68252	NaN	1	1	Median	0.75012	0.76641	NaN	1	1	Median	401890000	219620000	182270000	128620000	65556000	63063000	63113000	42096000	21017000	99608000	52140000	47468000	110550000	59828000	50719000	19238	442	18227	118092;118093;118094;118095;118096;118097;118098	159883;159884;159885;159886;159887;159888;159889;159890;159891;159892;159893	159890			11	
GIPVMGHSEGICHMYVDSEASVDK	1	Unmodified	2617.1611	0.16109339	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	60.755	60.572	3;4	5.8148E-09	52211	160511_QHF_FH_JSI12i_3	77.235	69.523			1.0856	0.95152	15.637	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9681	0.91427	NaN	1	0	Median	1.0684	1.0775	17.583	2	0	Median	175180000	78796000	96388000	0	0	0	0	0	0	57487000	26807000	30680000	117700000	51989000	65708000	19239	1837	18228	118099;118100;118101;118102	159894;159895;159896;159897;159898;159899	159898			6	
GIPVVEHK	1	Unmodified	877.50215	0.50215205	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	20.33	19.575	2;3	0.00047535	15961	160511_QHF_FH_JSI11i_2	83.265	63.788			0.76149	0.855	15.922	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6095	0.76917	NaN	1	0	Median	1.0066	1.0519	NaN	1	0	Median	0.76149	0.855	NaN	1	0	Median	148030000	80187000	67846000	0	0	0	40863000	24506000	16358000	77856000	40523000	37333000	29313000	15158000	14155000	19240	999;2197	18229	118103;118104;118105;118106	159900;159901;159902;159903;159904	159903			5	
GIQEAQVELQK	1	Unmodified	1241.6616	0.66156582	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	38.712	36.444	2	3.8672E-18	33007	160511_QHF_FH_JSI12i_1	162.36	92.533			0.82423	0.78725	17.092	5	1	Median	0.96687	0.78725	NaN	1	0	Median	0.82423	0.95611	NaN	1	0	Median	0.93064	0.90722	NaN	1	0	Median	0.63304	0.67618	11.367	2	1	Median	645990000	327950000	318040000	134020000	59901000	74123000	198930000	109410000	89521000	170310000	94312000	75996000	142720000	64327000	78396000	19241	3111	18230	118107;118108;118109;118110;118111	159905;159906;159907;159908;159909	159906			4	
GIQEEMEALVK	1	Unmodified	1245.6275	0.6274885	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		75.865	75.3	2	2.5369E-09	62773	160511_QHF_FH_JSI9i_1	129.16	73.589			0.95787	0.8885	66.632	3	1	Median	0.95787	0.77025	NaN	1	0	Median	2.1661	2.606	NaN	1	0	Median	0.91587	0.8885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	273460000	131350000	142110000	60121000	29736000	30385000	64855000	20240000	44614000	148480000	81370000	67114000	0	0	0	19242	2739	18231	118112;118113;118114	159910;159911;159912;159913	159911			4	
GIQEIADSVK	1	Unmodified	1058.5608	0.56078914	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		44.787	44.107	2	0.0052716	39158	160511_QHF_FH_JSI9i_1	54.191	29.2			1.1363	1.1219	1.4098	3	0	Median	1.3607	1.1126	NaN	1	0	Median	0.99111	1.1437	NaN	1	0	Median	1.1363	1.1219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	251220000	121730000	129490000	73056000	33803000	39254000	84780000	43620000	41160000	93379000	44305000	49074000	0	0	0	19243	122	18232	118115;118116;118117	159914;159915	159915			1	
GIQGLAK	1	Unmodified	685.41227	0.41227441	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.35	4	5	2				3	5		3	5	6	5	21.339	16.806	2	0.0060195	14756	160511_QHF_FH_JSI12i_1	92.692	34.032			0.86124	0.92924	31.909	17	4	Median	1.3943	1.1774	53.34	3	1	Median	0.77028	0.891	14.572	4	0	Median	1.1286	1.0775	31.105	5	2	Median	0.85517	0.92924	24.838	5	1	Median	2894200000	1291600000	1602700000	680270000	285960000	394310000	358490000	178090000	180400000	901400000	369770000	531630000	954050000	457750000	496300000	19244	1488	18233	118118;118119;118120;118121;118122;118123;118124;118125;118126;118127;118128;118129;118130;118131;118132;118133;118134;118135;118136	159916;159917;159918;159919;159920;159921;159922;159923;159924;159925;159926;159927;159928;159929;159930;159931;159932;159933;159934;159935	159920			20	
GIQGLLQFIK	1	Unmodified	1115.6703	0.67028001	5476	Q9UQ84	EXO1	Exonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	96.245	95.83	2	2.7595E-14	78058	160511_QHF_FH_JSI9i_3	163.77	120.53			0.78871	0.78821	29.536	3	0	Median	0.96375	0.8085	NaN	1	0	Median	0.43033	0.47884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78871	0.78821	NaN	1	0	Median	78981000	51192000	27789000	15489000	8248200	7240400	20915000	15305000	5609900	0	0	0	42578000	27639000	14939000	19245	5476	18234	118137;118138;118139	159936;159937;159938;159939;159940	159938			5	
GIQHTPISIK	1	Unmodified	1092.6291	0.62914348	3824	Q8WZA1	POMGNT1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.222	28.177	3	0.0018383	23629	160511_QHF_FH_JSI12i_3	54.471	46.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19246	3824	18235	118140	159941	159941			1	
GIQQATTGVSQETSENPGNK	1	Unmodified	2044.9661	0.96614027	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	28.621	28.18	2;3	8.221E-17	25265	160511_QHF_FH_JSI12i_1	123.02	101.72			0.9125	0.99687	70.896	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52631	0.60384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5821	1.6457	NaN	1	0	Median	77789000	36338000	41451000	0	0	0	26713000	18604000	8108300	0	0	0	51076000	17734000	33342000	19247	806	18236	118141;118142;118143;118144	159942;159943;159944;159945	159944			4	
GIREPVSVGTPSEGEGLGADGQEHK	1	Unmodified	2505.2096	0.20955844	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.282	41.699	4	0.0036821	34074	160511_QHF_FH_JSI9i_3	35.359	28.166			0.7115	0.58176	NaN	1	1	Median	0.7115	0.58176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22155000	14554000	7601000	22155000	14554000	7601000	0	0	0	0	0	0	0	0	0	19248	3436	18237	118145	159946	159946			1	
GIRHEVININLK	1	Unmodified	1404.8201	0.82013215	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			50.27	41.451	3;4	0.002827	22645	160513_QHF_FH_JSI10Kac_6	56.493	48.949			1.1474	1.3643	47.349	3	1	Plateau	0.97752	0.83907	NaN	1	0	Median	0.70975	0.84977	66.954	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61635000	35125000	26510000	12623000	6838700	5784300	49013000	28287000	20726000	0	0	0	0	0	0	19249	2093	18238	118146;118147;118148	159947;159948;159949	159948			3	
GISAFPESDNLFK	1	Unmodified	1423.6983	0.69834526	164	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	76.056	75.158	2	1.4764E-05	64955	160511_QHF_FH_JSI12i_2	119.27	83.763			0.97594	1.112	17.741	5	5	Median	NaN	NaN	NaN	0	0	Median	0.63303	0.77379	NaN	1	1	Median	1.0534	1.0701	10.199	2	2	Median	1.0155	1.1583	5.7759	2	2	Median	281540000	146730000	134800000	0	0	0	51506000	33569000	17938000	125210000	60077000	65133000	104820000	53089000	51734000	19250	164	18239	118149;118150;118151;118152;118153	159950;159951;159952;159953;159954	159951			5	
GISAGAVQTAGK	1	Unmodified	1058.572	0.57202253	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	1		2	20.946	20.454	2	0.0014486	17581	160511_QHF_FH_JSI10i_2	64.792	37.165			0.44814	0.46865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44814	0.46865	NaN	1	1	Median	239730000	203710000	36026000	0	0	0	0	0	0	0	0	0	239730000	203710000	36026000	19251	1580	18240	118154;118155;118156;118157	159955;159956;159957;159958	159958			4	
GISCMNTTLSESPFK	1	Unmodified	1670.7644	0.76439269	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.7	4	4	3					1		3	2	4	3	66.084	64.471	2	8.6308E-100	56791	160511_QHF_FH_JSI9i_2	228.93	210.67			0.58209	0.67478	61.145	11	6	Median	0.70658	0.5891	62.567	2	1	Median	0.57616	0.67006	0.99352	2	2	Median	0.62254	0.61086	57.832	4	2	Median	1.4668	1.4879	103.45	3	1	Plateau	2807800000	2149500000	658290000	290940000	208810000	82123000	149150000	90326000	58821000	1360300000	1114000000	246300000	1007400000	736370000	271040000	19252	2641	18241	118158;118159;118160;118161;118162;118163;118164;118165;118166;118167;118168;118169	159959;159960;159961;159962;159963;159964;159965;159966;159967;159968;159969;159970;159971;159972;159973;159974;159975;159976;159977	159971			19	
GISCMNTTLSESPFK	1	Oxidation (M)	1686.7593	0.75930731	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		4										2	2	52.978	52.024	2	0.00014159	44563	160511_QHF_FH_JSI12i_2	77.062	63.862			1.0335	1.0903	86.833	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60254	0.59004	NaN	1	1	Median	1.7725	2.0146	NaN	1	1	Median	20873000	9327400	11546000	0	0	0	0	0	0	11062000	6718900	4342600	9811300	2608500	7202900	19253	2641	18241	118170;118171;118172;118173	159978;159979;159980;159981	159979		2059	4	
GISDLAQHYLMR	0	Oxidation (M)	1418.6976	0.69763375	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		1	7						6	4	3	3	4	66.889	62.731	2;3	9.7056E-23	51414	160511_QHF_FH_JSI9i_3	177.57	159.68			0.92349	0.93833	14.2	13	6	Median	1.2023	0.88887	9.4358	3	0	Plateau	0.81481	0.93833	15.639	3	1	Median	0.92349	0.87706	19.153	3	2	Median	0.91818	0.94981	15.338	4	3	Median	1468700000	773230000	695440000	579280000	281580000	297700000	506810000	285160000	221640000	279680000	148590000	131090000	102900000	57900000	45004000	19254	1655	18242	118174;118175;118176;118177;118178;118179;118180;118181;118182;118183;118184;118185;118186;118187	159982;159983;159984;159985;159986;159987;159988;159989;159990;159991;159992;159993;159994;159995;159996;159997;159998;159999	159992		1330	17	
GISDLAQHYLMR	0	Unmodified	1402.7027	0.70271913	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	6.34		6	8						7	6	8	4	3	72.592	69.256	2;3	8.1442E-110	58554	160511_QHF_FH_JSI10i_3	272.58	244.19			0.96132	0.9974	32.762	20	9	Median	1.2243	1.0119	39.443	6	2	Median	0.90698	1.0885	11.671	7	3	Median	1.1399	1.1073	19.999	4	3	Median	0.87484	0.89389	51.658	3	1	Median	6326400000	3284400000	3042000000	2257000000	981390000	1275700000	1928800000	1084000000	844790000	1318900000	676640000	642310000	821590000	542360000	279230000	19255	1655	18242	118188;118189;118190;118191;118192;118193;118194;118195;118196;118197;118198;118199;118200;118201;118202;118203;118204;118205;118206;118207;118208	160000;160001;160002;160003;160004;160005;160006;160007;160008;160009;160010;160011;160012;160013;160014;160015;160016;160017;160018;160019;160020;160021;160022;160023;160024;160025;160026;160027;160028;160029;160030;160031;160032;160033;160034;160035;160036	160008			37	
GISDLVLK	1	Unmodified	843.50657	0.50656873	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.29	4	4	3				1	2		4	3	4	3	59.908	57.025	2	0.00014518	48801	160511_QHF_FH_JSI12i_2	125.25	69.811			0.96063	0.89585	46.082	14	3	Median	1.0232	0.85336	84.756	4	2	Median	0.81453	0.97063	24.398	3	0	Plateau	0.89698	0.96992	14.324	4	1	Linear	0.83322	0.89398	2.8182	3	0	Median	1227100000	663190000	563960000	269560000	157490000	112070000	214740000	123240000	91505000	339260000	151350000	187910000	403580000	231110000	172470000	19256	1304	18243	118209;118210;118211;118212;118213;118214;118215;118216;118217;118218;118219;118220;118221;118222	160037;160038;160039;160040;160041;160042;160043;160044;160045;160046;160047;160048;160049;160050;160051;160052;160053;160054;160055;160056	160040			20	
GISDPLTVFEQTEAAAR	0	Unmodified	1803.9003	0.90029254	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		94.528	94.214	2	0.00072629	83489	160511_QHF_FH_JSI10i_2	74.392	61.412			0.51106	0.62709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51106	0.62709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9020000	6751600	2268400	0	0	0	9020000	6751600	2268400	0	0	0	0	0	0	19257	93	18244	118223;118224	160057;160058	160058			2	
GISEETTTGVHNLYK	1	Unmodified	1647.8104	0.8104149	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.26	5	8	8				1	9	2	7	9	8	9	41.208	37.053	2;3	1.2667E-116	31953	160511_QHF_FH_JSI11i_2	318.35	281			0.94814	0.97373	15.561	33	3	Median	1.0604	0.87774	6.0819	7	0	Median	0.8701	1.0059	6.7895	9	0	Median	0.95352	0.9117	9.7967	8	1	Median	0.9664	1.0604	22.474	9	2	Median	7376800000	3629100000	3747700000	1244700000	591320000	653420000	1781400000	888310000	893050000	2506800000	1231600000	1275100000	1843900000	917830000	926100000	19258	1234	18245	118225;118226;118227;118228;118229;118230;118231;118232;118233;118234;118235;118236;118237;118238;118239;118240;118241;118242;118243;118244;118245;118246;118247;118248;118249;118250;118251;118252;118253;118254;118255;118256;118257	160059;160060;160061;160062;160063;160064;160065;160066;160067;160068;160069;160070;160071;160072;160073;160074;160075;160076;160077;160078;160079;160080;160081;160082;160083;160084;160085;160086;160087;160088;160089;160090;160091;160092;160093;160094;160095;160096;160097;160098;160099;160100;160101;160102;160103;160104;160105;160106;160107;160108;160109;160110;160111;160112;160113;160114;160115;160116;160117;160118;160119;160120;160121;160122;160123;160124;160125;160126;160127;160128;160129;160130;160131;160132;160133;160134;160135;160136	160106			78	
GISEVLK	1	Unmodified	744.43815	0.43815481	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	31.911	30.783	2	0.010482	25995	160511_QHF_FH_JSI12i_2	80.462	1.8468			0.53383	0.62942	47.056	2	2	Median	NaN	NaN	NaN	0	0	Median	0.3674	0.45127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77564	0.8779	NaN	1	1	Median	58338000	33434000	24904000	0	0	0	23622000	17632000	5990500	0	0	0	34715000	15802000	18913000	19259	1148	18246	118258;118259	160137;160138	160137			2	
GISGYIYGLWMK	1	Unmodified	1386.7006	0.70059386	3098	Q6P1X5	TAF2	Transcription initiation factor TFIID subunit 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		88.559	79.229	2	1.5256E-12	44266	160513_QHF_FH_JSI11Kac_6	129.85	103.91			1.0186	0.93539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0186	0.93539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58568000	28275000	30292000	0	0	0	0	0	0	58568000	28275000	30292000	0	0	0	19260	3098	18247	118260	160139	160139			1	
GISHVIVDEIHER	0	Unmodified	1502.7841	0.78414057	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.02		4	24						6	16	10	6	2	45.374	42.44	2;3;4	5.929E-13	34837	160511_QHF_FH_JSI9i_3	119.25	111.12			0.97319	0.87268	38.281	29	11	Median	1.0263	0.867	23.705	13	6	Median	0.82727	0.97563	30.27	8	2	Median	0.95178	0.92728	68.704	6	1	Median	0.69443	0.76579	7.9134	2	2	Median	2046900000	1112400000	934430000	1016500000	526320000	490210000	559930000	323540000	236380000	449710000	250490000	199230000	20700000	12084000	8615600	19261	2265	18248	118261;118262;118263;118264;118265;118266;118267;118268;118269;118270;118271;118272;118273;118274;118275;118276;118277;118278;118279;118280;118281;118282;118283;118284;118285;118286;118287;118288;118289;118290;118291;118292;118293;118294	160140;160141;160142;160143;160144;160145;160146;160147;160148;160149;160150;160151;160152;160153;160154;160155;160156;160157;160158;160159;160160;160161;160162;160163;160164;160165;160166;160167;160168;160169;160170;160171;160172;160173;160174;160175;160176;160177;160178;160179;160180	160170			36	
GISISSK	1	Unmodified	690.3912	0.39120462	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		15.344	15.107	2	0.015901	12599	160511_QHF_FH_JSI10i_1	56.547	2.9925			1.0224	1.0285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0224	1.0285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69008000	37619000	31389000	0	0	0	0	0	0	69008000	37619000	31389000	0	0	0	19262	3494	18249	118295;118296	160181;160182	160181			2	
GISLNPEQWSQLK	1	Unmodified	1498.778	0.77799256	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.72	5	8	4					4	7	8	6	8	6	81.33	77.389	2;3	4.0662E-135	71734	160511_QHF_FH_JSI10i_2	290.48	188.84			0.98062	1.0069	15.67	26	7	Median	1.2646	1.0713	11.943	7	2	Median	0.89257	1.0671	23.807	5	1	Median	0.95476	0.94559	13.741	8	2	Median	0.9459	1.0162	13.673	6	2	Median	10432000000	5178900000	5252900000	1600700000	767720000	832960000	2412300000	1312900000	1099400000	3834500000	1911100000	1923400000	2584400000	1187200000	1397100000	19263	1815	18250	118297;118298;118299;118300;118301;118302;118303;118304;118305;118306;118307;118308;118309;118310;118311;118312;118313;118314;118315;118316;118317;118318;118319;118320;118321;118322;118323;118324	160183;160184;160185;160186;160187;160188;160189;160190;160191;160192;160193;160194;160195;160196;160197;160198;160199;160200;160201;160202;160203;160204;160205;160206;160207;160208;160209;160210;160211;160212;160213;160214;160215;160216;160217;160218;160219;160220;160221;160222;160223;160224;160225;160226;160227;160228;160229;160230;160231;160232;160233;160234;160235;160236;160237;160238;160239;160240;160241	160231			58	
GISMSSSK	1	Unmodified	795.37965	0.37965365	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	10.979	10.453	2	0.0091586	8379	160511_QHF_FH_JSI10i_2	65.246	54.177			1.0254	1.224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0254	1.224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63824000	30409000	33415000	0	0	0	63824000	30409000	33415000	0	0	0	0	0	0	19264	5616	18251	118325;118326	160242;160243	160242			2	
GISNMLDVNGLFTLSHITQLVLSHNK	1	Unmodified	2850.5062	0.50619816	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	12.8	5.63			1						3	1		2	1	99.142	92.152	4	1.6822E-06	92227	160511_QHF_FH_JSI11i_3	60.621	58.079			0.99329	0.89194	10.695	4	1	Linear	1.0032	0.84479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89855	0.85458	13.732	2	1	Median	0.94121	0.98231	NaN	1	0	Median	2315700000	1187100000	1128600000	1050800000	513450000	537400000	0	0	0	671660000	353580000	318080000	593190000	320060000	273130000	19265	2668	18252	118327;118328;118329;118330	160244;160245	160244			1	
GISNMLDVNGLFTLSHITQLVLSHNK	1	Oxidation (M)	2866.5011	0.50111278	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.495	88.087	4	2.3793E-53	47648	160513_QHF_FH_JSI12Kac_6	183.47	171.12			0.9842	0.97142	14.622	4	0	Median	1.1382	0.99076	NaN	1	0	Median	0.63515	0.73543	NaN	1	0	Median	1.0674	1.0033	NaN	1	0	Median	0.90745	0.95246	NaN	1	0	Median	782090000	389500000	392590000	259150000	109630000	149530000	178490000	103640000	74847000	139160000	71292000	67864000	205290000	104940000	100350000	19266	2668	18252	118331;118332;118333;118334	160246;160247;160248;160249;160250	160248		2092	5	
GISPVPINLR	0	Unmodified	1064.6342	0.63422886	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.799	3	4	5							2	4	3	3	62.087	61.259	2	3.2313E-11	52657	160511_QHF_FH_JSI12i_3	150.4	82.418			0.96398	1.0227	44.052	12	2	Median	1.4007	1.1826	21.535	2	0	Median	0.97216	1.1658	74.809	4	2	Median	1.0644	1.0071	12.254	3	0	Plateau	1.0081	1.0897	30.776	3	0	Plateau	1968200000	969470000	998690000	257620000	123340000	134280000	575140000	271890000	303250000	515510000	257260000	258260000	619880000	316980000	302900000	19267	1711	18253	118335;118336;118337;118338;118339;118340;118341;118342;118343;118344;118345;118346	160251;160252;160253;160254;160255;160256;160257;160258;160259;160260;160261;160262;160263;160264;160265;160266;160267;160268	160268			18	
GISQEQMNEFR	0	Unmodified	1337.6034	0.60339901	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.25	37.806	2	3.5042E-07	32328	160511_QHF_FH_JSI11i_2	178.54	134.73			1.9124	1.9101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9124	1.9101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120240000	42206000	78039000	0	0	0	0	0	0	120240000	42206000	78039000	0	0	0	19268	1021	18254	118347	160269	160269			1	
GISQEQMQEFR	0	Oxidation (M)	1367.614	0.6139637	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	22.554	22.227	2	0.0070063	19228	160511_QHF_FH_JSI11i_1	75.416	38.722			1.0161	1.008	9.2197	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97805	0.94442	NaN	1	1	Median	1.0557	1.0759	NaN	1	1	Median	67762000	30933000	36829000	0	0	0	0	0	0	35307000	15352000	19955000	32454000	15580000	16874000	19269	361	18255	118348;118349;118350	160270;160271;160272;160273	160270		138	4	
GISQEQMQEFR	0	Unmodified	1351.619	0.61904908	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.75	5.36	1	2					1			1		2	1	41.344	38.327	2	9.451E-17	33060	160511_QHF_FH_JSI11i_2	163.64	111.16			1.0689	1.109	24.963	4	2	Median	0.87541	0.75217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2329	1.2208	15.969	2	1	Median	1.0361	1.1278	NaN	1	0	Median	741300000	282830000	458470000	294940000	122750000	172200000	0	0	0	442590000	157960000	284630000	3772200	2122300	1649900	19270	361	18255	118351;118352;118353;118354	160274;160275;160276;160277	160276			3	
GISSQPFPELHCAALK	1	Unmodified	1753.8821	0.88214006	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.931	60.794	3	9.0601E-07	52328	160511_QHF_FH_JSI12i_3	110.35	98.146			1.1166	1.0782	37.743	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88735	0.82567	NaN	1	0	Median	1.4051	1.408	NaN	1	0	Median	385570000	182110000	203460000	0	0	0	0	0	0	157700000	88069000	69631000	227870000	94041000	133830000	19271	2730	18256	118355;118356	160278;160279;160280;160281	160280			4	
GISSSNEGVEEPSK	1	Unmodified	1418.6525	0.65251728	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	19.457	19.157	2	5.6286E-13	16372	160511_QHF_FH_JSI10i_1	124.12	76.295			0.77054	0.76252	12.517	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73209	0.69793	NaN	1	0	Median	0.811	0.83308	NaN	1	1	Median	56860000	34736000	22124000	0	0	0	0	0	0	32691000	19371000	13320000	24169000	15365000	8803300	19272	5113	18257	118357;118358;118359	160282;160283;160284	160284			3	
GISTKPVYIPEVELNHK	2	Unmodified	1923.0466	0.046562847	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	59.412	58.583	3;4	2.1876E-06	50370	160511_QHF_FH_JSI12i_3	100.77	91.951			0.95516	0.88729	10.021	8	0	Median	1.1074	0.90004	3.0514	2	0	Median	0.75204	0.86111	5.2683	2	0	Median	1.1092	1.0531	6.4113	2	0	Median	0.82972	0.84543	5.1834	2	0	Median	1579900000	775670000	804270000	200620000	88763000	111860000	224850000	118920000	105930000	572330000	261520000	310800000	582140000	306460000	275670000	19273	2525	18258	118360;118361;118362;118363;118364;118365;118366;118367	160285;160286;160287;160288;160289;160290;160291;160292;160293;160294;160295;160296;160297;160298	160297			13	
GISVHISNAEPK	1	Unmodified	1250.6619	0.66190017	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.24	6.53		7	7					7	8	8	8	7	6	35.979	30.865	2;3	5.0869E-53	26308	160511_QHF_FH_JSI11i_3	238.86	186.61			0.89207	0.56686	18.309	28	3	Linear	1.1032	0.93442	18.814	7	1	Median	0.7918	0.9179	18.918	8	1	Median	0.78601	0.73799	18.768	7	1	Linear	0.88405	0.95265	17.296	6	0	Median	4756400000	2337300000	2419200000	572660000	272800000	299850000	854240000	471370000	382870000	1622100000	767080000	854980000	1707500000	826010000	881450000	19274	2360	18259	118368;118369;118370;118371;118372;118373;118374;118375;118376;118377;118378;118379;118380;118381;118382;118383;118384;118385;118386;118387;118388;118389;118390;118391;118392;118393;118394;118395;118396	160299;160300;160301;160302;160303;160304;160305;160306;160307;160308;160309;160310;160311;160312;160313;160314;160315;160316;160317;160318;160319;160320;160321;160322;160323;160324;160325;160326;160327;160328;160329;160330;160331;160332;160333;160334;160335;160336;160337;160338;160339;160340;160341;160342;160343	160301			45	
GISVNAEQVR	0	Unmodified	1071.5673	0.5672715	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.937	27.637	2	0.0038973	23200	160511_QHF_FH_JSI12i_2	67.897	25.299			0.91408	1.0203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91408	1.0203	NaN	1	1	Median	15156000	9174100	5982100	0	0	0	0	0	0	0	0	0	15156000	9174100	5982100	19275	4733	18260	118397	160344;160345;160346	160344			3	
GITAFIVEK	1	Unmodified	976.55933	0.55933258	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.02		4	4					2		2	3	3	2	62.081	59.238	2	5.5416E-05	29984	160513_QHF_FH_JSI10Kac_5	120.15	98.024			1.0787	1.0978	9.4445	10	2	Median	1.1913	1.0063	12.712	2	0	Median	0.84122	1.0091	4.5806	3	0	Plateau	1.2591	1.2124	9.1611	3	1	Plateau	1.1444	1.2075	1.7781	2	1	Median	523020000	265030000	257990000	58624000	29185000	29439000	88143000	46179000	41964000	151740000	74490000	77248000	224510000	115180000	109330000	19276	1277	18261	118398;118399;118400;118401;118402;118403;118404;118405;118406;118407	160347;160348;160349;160350;160351;160352;160353;160354	160354			7	
GITALQADIK	1	Unmodified	1028.5866	0.58660996	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.85	3	2	1				3			2	2	3	2	51.041	46.835	2	1.0975E-05	40139	160511_QHF_FH_JSI12i_2	114.5	86.322			0.90304	1.0009	17.77	9	4	Median	1.6313	1.3797	0.73699	2	1	Median	0.80836	0.94561	8.0295	2	0	Median	1.1238	1.1258	18.752	3	2	Median	0.88598	0.98626	0.62804	2	1	Median	353120000	178480000	174630000	40829000	18909000	21921000	74916000	35838000	39078000	165180000	85561000	79623000	72189000	38177000	34012000	19277	3709	18262	118408;118409;118410;118411;118412;118413;118414;118415;118416	160355;160356;160357;160358;160359;160360;160361;160362;160363;160364;160365;160366	160356			12	
GITEPPFGIFVFNK	1	Unmodified	1564.829	0.8289655	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			4						4	2		4	2	97.503	92.848	2;3	3.1921E-21	90616	160511_QHF_FH_JSI11i_3	170.72	145.06			1.0247	0.9034	25.402	8	6	Median	0.98075	0.82357	5.9253	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1213	1.0704	24.336	4	3	Median	0.9309	0.9758	41.542	2	2	Median	1361800000	660060000	701710000	102820000	55314000	47507000	0	0	0	727400000	322920000	404470000	531540000	281820000	249720000	19278	2493	18263	118417;118418;118419;118420;118421;118422;118423;118424	160367;160368;160369;160370;160371;160372;160373;160374;160375;160376	160367			10	
GITEQQK	1	Unmodified	802.41848	0.418482	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	5.42	4	4			2	3				2	4	4	3	5.6246	2.6116	2	3.4418E-07	2158	160513_QHF_FH_JSI11Kac_3	134.66	75.682			0.89637	0.99406	20.021	13	1	Median	1.535	1.2956	0.1659	2	1	Median	0.87379	1.0344	22.4	4	0	Median	0.89191	0.84941	12.67	4	0	Median	0.78846	0.84126	13.566	3	0	Median	8923000000	4587700000	4335200000	1926800000	773750000	1153100000	2286400000	1268600000	1017800000	2496900000	1315200000	1181800000	2212800000	1230200000	982570000	19279	1024	18264	118425;118426;118427;118428;118429;118430;118431;118432;118433;118434;118435;118436;118437	160377;160378;160379;160380;160381;160382;160383;160384;160385;160386;160387;160388	160381			12	
GITFDSGGISIK	1	Unmodified	1193.6292	0.62920306	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.224	67.926	2	0.00059249	58407	160511_QHF_FH_JSI12i_2	83	40.891			1.6985	1.9618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6985	1.9618	NaN	1	1	Median	134840000	37771000	97068000	0	0	0	0	0	0	0	0	0	134840000	37771000	97068000	19280	1313	18265	118438	160389	160389			1	
GITGVDLFGTTDAVVK	1	Unmodified	1591.8457	0.84573777	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.643	8	2	1							3	2	1	5	85.564	84.975	2;3	6.7752E-28	77356	160511_QHF_FH_JSI12i_1	152.4	128.41			1.147	1.2136	34.983	8	4	Median	1.0472	0.87827	5.2842	2	0	Median	1.4773	1.7675	29.526	2	1	Median	1.1018	1.082	NaN	1	0	Median	0.9486	1.0277	33.776	3	3	Plateau	952490000	444150000	508340000	126690000	57989000	68697000	342830000	163590000	179230000	183870000	93651000	90223000	299110000	128920000	170190000	19281	1805	18266	118439;118440;118441;118442;118443;118444;118445;118446;118447;118448;118449	160390;160391;160392;160393;160394;160395;160396;160397;160398;160399;160400;160401;160402	160396			13	
GITGVEDK	1	Unmodified	817.41815	0.41814765	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	5.85	4	4			2	3	3			2	5	4	5	16.914	12.835	2	0.00021531	11580	160511_QHF_FH_JSI12i_1	119.29	63.615			0.92721	0.97385	13.607	16	0	Median	1.1778	0.99436	0.35854	2	0	Median	0.93429	1.1336	14.445	5	0	Median	0.92721	0.91428	6.0192	4	0	Median	0.83007	0.89006	12.917	5	0	Median	12142000000	5890500000	6251700000	2718900000	1035100000	1683900000	3333800000	1652400000	1681400000	2857200000	1547300000	1309900000	3232300000	1655800000	1576500000	19282	1322	18267	118450;118451;118452;118453;118454;118455;118456;118457;118458;118459;118460;118461;118462;118463;118464;118465	160403;160404;160405;160406;160407;160408;160409;160410;160411;160412;160413;160414;160415;160416;160417;160418;160419;160420;160421;160422;160423;160424;160425;160426;160427;160428;160429	160408			27	
GITGVEDKESWHGK	2	Acetyl (K)	1583.758	0.7579854	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		50.265	39.786	3	0.0014799	22113	160513_QHF_FH_JSI11Kac_5	58.32	46.706			0.91873	0.99625	55.811	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2431	1.4783	NaN	1	0	Median	0.67902	0.6714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11503000	5858300	5644400	0	0	0	2334400	1281100	1053300	9168300	4577200	4591100	0	0	0	19283	1322	18268	118466;118467	160430;160431	160430	1247;1248		2	
GITGVEDKESWHGKPLPK	3	Acetyl (K)	2019.0425	0.042540102	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	2		By matching	By MS/MS		16	0									3		1	2		56.565	47.235	3;4	2.1341E-43	25563	160513_QHF_FH_JSI11Kac_6	175.65	138.1			0.50676	0.55265	77.115	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78911	0.95338	NaN	1	0	Median	0.32543	0.32036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59622000	41466000	18156000	0	0	0	21762000	12888000	8873700	37860000	28578000	9282200	0	0	0	19284	1322	18269	118468;118469;118470	160432;160433	160432	1247;1248		2	
GITHIGYTDLPSR	0	Unmodified	1428.7361	0.73612775	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	2	1	46.923	43.839	2;3	0.0055205	23700	160513_QHF_FH_JSI11Kac_6	47.532	33.448			1.1899	1.0597	16.945	4	1	Median	1.2303	1.0232	NaN	1	1	Median	1.0203	1.2144	25.518	2	0	Median	1.1737	1.0975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205890000	111570000	94322000	5751800	3125900	2625800	104890000	60053000	44841000	95241000	48387000	46854000	0	0	0	19285	2405	18270	118471;118472;118473;118474;118475;118476	160434;160435;160436;160437;160438	160436			5	
GITIDISLWK	1	Unmodified	1144.6492	0.64921022	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0				By MS/MS	16	0									1				1	87.854	78.412	2	0.0012499	42024	160513_QHF_FH_JSI12Kac_6	82.749	51.676			0.37242	0.40933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37242	0.40933	NaN	1	0	Median	13409000	10126000	3283100	0	0	0	0	0	0	0	0	0	13409000	10126000	3283100	19286	2072;2231	18271	118477	160439	160439			1	
GITIDISLWKFETSK	2	Unmodified	1736.9349	0.93488713	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.12		1	4						11	4	2	6	4	90.195	84.583	2;3	3.8385E-61	43922	160513_QHF_FH_JSI11Kac_6	212.95	169.32			0.63172	0.61493	135.64	13	6	Median	0.41936	0.35401	170.23	4	2	Median	0.11013	0.13105	247.75	2	1	Median	0.66441	0.64163	78.511	5	2	Median	0.30989	0.32469	133.64	2	1	Median	5052000000	3734500000	1317500000	1021800000	638290000	383490000	1931000000	1484800000	446180000	1686200000	1255300000	430910000	412940000	356050000	56890000	19287	2072	18272	118478;118479;118480;118481;118482;118483;118484;118485;118486;118487;118488;118489;118490;118491;118492;118493	160440;160441;160442;160443;160444;160445;160446;160447;160448;160449;160450;160451;160452;160453	160441			14	
GITIDISLWKFETTK	2	Unmodified	1750.9505	0.9505372	2231	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.3		2	10						22	6	14	6	8	95.929	90.986	2;3	4.5598E-31	41994	160513_QHF_FH_JSI12Kac_6	188.06	130.71			0.83733	0.87286	71.39	29	2	Median	0.94323	0.85718	12.312	6	0	Median	0.67351	0.79711	114.54	9	1	Median	0.99001	0.96358	26.573	6	0	Median	0.80422	0.84051	47.991	8	1	Median	37996000000	22248000000	15748000000	7658100000	3683200000	3974900000	12393000000	9400600000	2992500000	11767000000	5853500000	5913200000	6177900000	3310800000	2867000000	19288	2231	18273	118494;118495;118496;118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509;118510;118511;118512;118513;118514;118515;118516;118517;118518;118519;118520;118521;118522;118523;118524;118525;118526;118527	160454;160455;160456;160457;160458;160459;160460;160461;160462;160463;160464;160465;160466;160467;160468;160469;160470;160471;160472;160473;160474;160475;160476;160477;160478;160479;160480;160481;160482;160483;160484;160485;160486;160487;160488;160489;160490;160491;160492;160493;160494;160495	160481			40	
GITINAAHVEYSTAAR	0	Unmodified	1672.8533	0.85328277	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.84	6.48		9	7					11	10	12	10	8	7	51.557	45.372	2;3	5.1172E-75	24044	160513_QHF_FH_JSI9Kac_6	263.59	236.26			1.005	0.99758	13.108	36	9	Median	1.2534	1.0514	14.107	12	5	Median	0.80228	0.97874	17.228	9	2	Median	1.005	0.9915	5.0974	8	0	Median	0.981	1.033	12.897	7	2	Median	14842000000	7490500000	7351400000	3762100000	1722400000	2039700000	6042700000	3232900000	2809700000	2884700000	1504300000	1380400000	2152400000	1030800000	1121600000	19289	1658	18274	118528;118529;118530;118531;118532;118533;118534;118535;118536;118537;118538;118539;118540;118541;118542;118543;118544;118545;118546;118547;118548;118549;118550;118551;118552;118553;118554;118555;118556;118557;118558;118559;118560;118561;118562;118563;118564	160496;160497;160498;160499;160500;160501;160502;160503;160504;160505;160506;160507;160508;160509;160510;160511;160512;160513;160514;160515;160516;160517;160518;160519;160520;160521;160522;160523;160524;160525;160526;160527;160528;160529;160530;160531;160532;160533;160534;160535;160536;160537;160538;160539;160540;160541;160542;160543;160544;160545;160546;160547;160548;160549;160550;160551;160552;160553;160554;160555;160556;160557;160558;160559;160560;160561	160545			65	
GITIQSAATYTMWK	1	Unmodified	1569.7861	0.78611441	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	78.878	72.889	2	1.7732E-96	38333	160513_QHF_FH_JSI9Kac_6	249.2	182.76			0.95749	0.92618	18.268	4	0	Median	0.86843	0.74873	NaN	1	0	Median	0.72816	0.87483	NaN	1	0	Median	1.0557	0.98055	NaN	1	0	Median	1.2069	1.154	NaN	1	0	Median	280890000	142680000	138200000	52193000	22267000	29926000	143400000	81626000	61773000	54179000	24024000	30155000	31115000	14764000	16351000	19290	4221	18275	118565;118566;118567;118568;118569	160562;160563;160564;160565;160566;160567;160568;160569;160570	160565			9	
GITIVVSPLIALIQDQVDHLLTLK	1	Unmodified	2598.536	0.53602495	604	O94762	RECQL5	ATP-dependent DNA helicase Q5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.56	97.839	3	2.76E-42	57911	160513_QHF_FH_JSI10Kac_6	168.57	153.44			0.91164	1.0794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91164	1.0794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89303000	51118000	38186000	0	0	0	89303000	51118000	38186000	0	0	0	0	0	0	19291	604	18276	118570	160571	160571			1	
GITMATAK	1	Unmodified	791.42112	0.42112454	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0			By MS/MS		14	0							1					1		24.68	16.943	2	0.0073624	10982	160513_QHF_FH_JSI11Kac_4	73.248	25.075			1.1417	1.116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1417	1.116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11697000	4923800	6772800	0	0	0	0	0	0	11697000	4923800	6772800	0	0	0	19292	5616;5628	18277	118571	160572	160572			1	
GITNLCVIGGDGSLTGANLFR	0	Unmodified	2134.0841	0.08408734	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	98.548	98.557	2;3	1.4496E-14	87758	160511_QHF_FH_JSI11i_3	126.25	107.71			0.8988	0.87002	17.65	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80761	0.76794	NaN	1	1	Median	1.0003	0.98566	NaN	1	0	Median	70383000	38337000	32046000	0	0	0	0	0	0	42744000	24201000	18543000	27640000	14136000	13503000	19293	2176	18278	118572;118573;118574;118575	160573;160574;160575;160576;160577;160578	160573			6	
GITNLCVIGGDGSLTGANLFRK	1	Unmodified	2262.1791	0.17905036	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			89.092	87.982	3	0.0034587	73530	160511_QHF_FH_JSI10i_3	37.379	29.927			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7489800	7489800	0	0	0	0	7489800	7489800	0	0	0	0	0	0	0	19294	2176	18279	118576	160579	160579			1	
GITPNFMK	1	Unmodified	906.46332	0.4633237	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	46.001	45.085	2	0.00021208	39532	160511_QHF_FH_JSI11i_3	119.57	85.828			1.2652	1.2629	12.236	8	1	Median	1.4582	1.2081	8.3751	2	0	Median	1.0346	1.2103	13.563	2	0	Median	1.2652	1.2326	4.3934	2	1	Median	1.3255	1.435	19.033	2	0	Median	1646000000	737530000	908500000	224730000	84215000	140510000	302720000	142390000	160320000	441250000	206290000	234960000	677340000	304630000	372710000	19295	3071	18280	118577;118578;118579;118580;118581;118582;118583;118584	160580;160581;160582;160583;160584;160585;160586;160587;160588;160589	160581			10	
GITPNFMK	1	Oxidation (M)	922.45824	0.45823833	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	1	0		By MS/MS	By matching		3	0			2								1	1		32.025	31.335	2	0.012306	26269	160511_QHF_FH_JSI10i_3	57.281	40.726			0.69207	0.70774	35.419	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78138	0.90917	NaN	1	0	Median	0.61296	0.55094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58865000	30810000	28055000	0	0	0	24671000	13630000	11041000	34193000	17180000	17014000	0	0	0	19296	3071	18280	118585;118586	160590	160590		2187	1	
GITTAAVCVYPAR	0	Unmodified	1377.7075	0.70747015	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0			By MS/MS		14	0							2					2		61.163	50.113	2	1.0174E-09	28510	160513_QHF_FH_JSI11Kac_4	123.88	104.61			0.63109	0.63032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63109	0.63032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2322400	1598300	724170	0	0	0	0	0	0	2322400	1598300	724170	0	0	0	19297	5555	18281	118587;118588	160591;160592	160592			2	
GITTEQLDALGCR	0	Unmodified	1432.698	0.69802768	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		54.338	53.927	2	0.00027377	48848	160511_QHF_FH_JSI11i_1	100.93	89.767			1.1076	1.0588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1076	1.0588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32932000	14755000	18177000	0	0	0	0	0	0	32932000	14755000	18177000	0	0	0	19298	4522	18282	118589	160593	160593			1	
GITVPEK	1	Unmodified	742.4225	0.42250475	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27	4					2	3			1	2	3	3	26.837	21.658	2	0.0028642	19179	160511_QHF_FH_JSI12i_1	108.24	11.167			0.91249	1.021	40.354	9	1	Median	1.7956	1.482	NaN	1	0	Median	0.85173	1.0077	3.6676	2	0	Median	1.05	1.021	68.892	3	1	Median	0.91249	0.99401	11.759	3	0	Median	1594200000	886780000	707460000	368290000	175190000	193100000	346780000	200490000	146290000	396330000	225440000	170890000	482840000	285670000	197180000	19299	1667	18283	118590;118591;118592;118593;118594;118595;118596;118597;118598	160594;160595;160596;160597;160598;160599;160600;160601;160602;160603;160604;160605	160597			12	
GITYDDPIK	1	Unmodified	1020.5128	0.51277632	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.594	40.868	2	0.0012499	37122	160511_QHF_FH_JSI12i_1	78.334	51.732			0.89648	1.2477	33.75	3	2	Plateau	0.85765	0.70877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2865	1.2477	NaN	1	1	Median	1.2095	1.2939	NaN	1	1	Median	260020000	111140000	148880000	53833000	26825000	27009000	0	0	0	98502000	38792000	59710000	107680000	45519000	62162000	19300	5347	18284	118599;118600;118601;118602	160606;160607;160608;160609	160607			4	
GIVDLIEER	0	Unmodified	1042.5659	0.56587452	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	67.471	66.772	2	3.5787E-05	59452	160511_QHF_FH_JSI11i_3	99.802	47.948			1.0386	0.97328	11.307	5	2	Median	1.1348	0.97129	NaN	1	1	Median	0.87221	1.0284	20.966	2	1	Median	1.0308	0.97328	NaN	1	0	Median	1.0386	1.0735	NaN	1	0	Median	1108100000	551950000	556150000	119180000	62226000	56954000	208720000	118470000	90244000	272130000	126210000	145920000	508070000	245040000	263030000	19301	4221	18285	118603;118604;118605;118606;118607	160610;160611;160612;160613;160614;160615	160610			6	
GIVDQSQQAYQEAFEISK	1	Unmodified	2039.98	0.97999942	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.86	13	7	9							12	5	6	6	75.333	74.545	2;3	0	67827	160511_QHF_FH_JSI11i_1	390.56	368.33			0.89285	0.97689	24.175	22	9	Median	0.96184	0.80001	33.277	9	7	Median	0.81444	1.0006	9.6219	5	0	Median	0.94486	0.91097	15.657	4	1	Median	0.87924	0.93161	20.192	4	1	Median	10277000000	5197100000	5079500000	2633800000	995380000	1638400000	2830600000	1460600000	1370000000	2438100000	1318400000	1119700000	2374100000	1422700000	951380000	19302	2051	18286	118608;118609;118610;118611;118612;118613;118614;118615;118616;118617;118618;118619;118620;118621;118622;118623;118624;118625;118626;118627;118628;118629;118630;118631;118632;118633;118634;118635;118636	160616;160617;160618;160619;160620;160621;160622;160623;160624;160625;160626;160627;160628;160629;160630;160631;160632;160633;160634;160635;160636;160637;160638;160639;160640;160641;160642;160643;160644;160645;160646;160647;160648;160649;160650;160651;160652;160653;160654;160655;160656;160657;160658;160659;160660;160661;160662;160663;160664;160665;160666;160667;160668;160669	160620			53	
GIVDQSQQAYQEAFEISKK	2	Unmodified	2168.075	0.074962442	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.03	5.63	7	9	9					3	4	6	8	11	7	71.815	69.231	2;3;4	1.6475E-138	62435	160511_QHF_FH_JSI11i_3	283.76	242.79			0.95868	0.97558	27.424	31	8	Median	0.98802	0.80931	10.303	6	0	Median	0.93526	1.1414	14.592	7	1	Median	1.0195	1.0188	38.27	11	5	Median	0.89854	0.97558	17.477	7	2	Median	28273000000	14516000000	13757000000	3701000000	2128000000	1573000000	5096300000	2913800000	2182500000	8517200000	3752900000	4764300000	10959000000	5721800000	5236800000	19303	2051	18287	118637;118638;118639;118640;118641;118642;118643;118644;118645;118646;118647;118648;118649;118650;118651;118652;118653;118654;118655;118656;118657;118658;118659;118660;118661;118662;118663;118664;118665;118666;118667;118668	160670;160671;160672;160673;160674;160675;160676;160677;160678;160679;160680;160681;160682;160683;160684;160685;160686;160687;160688;160689;160690;160691;160692;160693;160694;160695;160696;160697;160698;160699;160700;160701;160702;160703;160704;160705;160706;160707;160708;160709;160710;160711;160712;160713;160714;160715;160716;160717;160718;160719;160720;160721;160722;160723;160724;160725;160726;160727;160728;160729;160730;160731;160732;160733;160734;160735;160736;160737;160738;160739	160671			70	
GIVDSITGQR	0	Unmodified	1044.5564	0.55637247	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	3	1	2	40.502	39.516	2	6.6135E-11	34816	160511_QHF_FH_JSI10i_2	145.16	120.26			0.99008	1.034	9.7493	8	2	Median	1.1121	0.91437	5.9413	2	0	Median	0.83587	1.0302	5.9166	3	1	Median	1.0151	1.0378	NaN	1	0	Median	1.0654	1.1397	8.4452	2	1	Median	1110200000	570780000	539380000	251910000	109210000	142700000	446950000	254190000	192760000	221740000	111490000	110250000	189560000	95888000	93667000	19304	1085	18288	118669;118670;118671;118672;118673;118674;118675;118676	160740;160741;160742;160743;160744;160745;160746;160747;160748;160749;160750	160749			10	
GIVEESVTGVHR	0	Unmodified	1281.6677	0.66771383	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		8	7					7	6	6	8	8	6	33.071	29.059	2;3	1.5645E-53	24277	160511_QHF_FH_JSI12i_3	222	185.6			0.99378	0.98321	19.422	21	3	Median	1.2696	1.0972	26.572	5	1	Median	0.78929	0.95878	17.102	5	1	Median	0.99378	0.98321	13.348	5	0	Median	0.96203	1.0186	18.265	6	1	Median	2463200000	1245500000	1217700000	257320000	119150000	138170000	380360000	219330000	161030000	998040000	484010000	514020000	827460000	422990000	404470000	19305	389	18289	118677;118678;118679;118680;118681;118682;118683;118684;118685;118686;118687;118688;118689;118690;118691;118692;118693;118694;118695;118696;118697;118698;118699;118700;118701;118702;118703;118704	160751;160752;160753;160754;160755;160756;160757;160758;160759;160760;160761;160762;160763;160764;160765;160766;160767;160768;160769;160770;160771;160772;160773;160774;160775;160776;160777;160778;160779;160780;160781;160782;160783;160784;160785;160786;160787;160788	160785			38	
GIVEFASK	1	Unmodified	849.45962	0.45961853	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.3	2	7	4				3	4	2	5	6	6	5	41.202	36.629	1;2	0.00091687	32016	160511_QHF_FH_JSI9i_2	96.492	57.7			1.0838	1.0383	17.403	22	0	Median	1.4059	1.1817	15.256	5	0	Median	0.84007	1.0077	10.537	6	0	Median	1.2604	1.2694	19.134	6	0	Median	0.91803	1.0137	12.002	5	0	Median	3227200000	1515200000	1711900000	642420000	298760000	343660000	934570000	502720000	431850000	1193100000	516520000	676590000	457060000	197250000	259820000	19306	1222	18290	118705;118706;118707;118708;118709;118710;118711;118712;118713;118714;118715;118716;118717;118718;118719;118720;118721;118722;118723;118724;118725;118726	160789;160790;160791;160792;160793;160794;160795;160796;160797;160798;160799;160800;160801;160802;160803;160804;160805;160806;160807;160808;160809;160810	160797			21	
GIVEFASKPAAR	1	Acetyl (K)	1286.6983	0.69828568	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	2	1	63.319	52.522	2	4.1121E-19	28556	160513_QHF_FH_JSI11Kac_5	157.24	87.821			0.94105	1.0111	20.238	6	0	Median	1.3586	1.1639	NaN	1	0	Median	0.94105	1.114	1.8138	2	0	Median	0.82497	0.80771	19.864	2	0	Median	0.74345	0.82228	NaN	1	0	Median	87481000	49191000	38290000	11218000	3570900	7647000	23689000	13081000	10607000	43942000	26609000	17333000	8632900	5929900	2703100	19307	1222	18291	118727;118728;118729;118730;118731;118732	160811;160812;160813;160814;160815;160816;160817;160818	160816	1093		8	
GIVEFSGK	1	Unmodified	835.44397	0.44396847	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.46	3	3	1				3	4		1	4	4	5	38.378	33.075	2	0.0017591	27924	160511_QHF_FH_JSI11i_2	85.212	59.103			1.0082	1.3366	30.843	14	4	Linear	0.78435	0.66874	NaN	1	1	Median	0.68539	0.82637	28.918	4	1	Median	1.0113	1.0168	25.649	4	1	Median	0.79937	0.7985	37.758	5	1	Median	2106400000	1083100000	1023300000	11061000	6680900	4379900	600910000	333340000	267580000	835660000	431280000	404380000	658800000	311830000	346970000	19308	2644	18292	118733;118734;118735;118736;118737;118738;118739;118740;118741;118742;118743;118744;118745;118746	160819;160820;160821;160822;160823;160824;160825;160826;160827;160828;160829;160830;160831;160832;160833	160825			15	
GIVEFSGKPAAR	1	Unmodified	1230.6721	0.67207093	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.57		2	8						3	4	5	2	2	32.802	30.69	2;3	6.2139E-10	25105	160511_QHF_FH_JSI9i_3	146.11	128.88			1.0036	0.92995	8.7592	12	2	Median	1.1004	0.90282	6.8982	4	1	Median	0.78958	0.90332	10.191	4	1	Median	1.0999	1.046	3.9768	2	0	Median	0.92627	0.92394	5.0864	2	0	Median	4626400000	2250200000	2376200000	1651000000	722540000	928440000	1249600000	746200000	503360000	1449800000	626980000	822770000	276140000	154500000	121640000	19309	2644	18293	118747;118748;118749;118750;118751;118752;118753;118754;118755;118756;118757;118758;118759	160834;160835;160836;160837;160838;160839;160840;160841;160842;160843;160844;160845;160846;160847;160848;160849;160850;160851;160852;160853;160854;160855;160856	160847			23	
GIVEFSGKPAAR	1	Acetyl (K)	1272.6826	0.68263561	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	1						5	6	9	4	4	6	6	8	57.968	47.332	2;3	3.0831E-62	26089	160513_QHF_FH_JSI9Kac_5	229.17	166.62			0.96915	1.0315	173.56	23	4	Median	1.1032	1.0567	11.822	4	0	Linear	0.83741	0.99374	9.5142	6	0	Median	1.0863	1.0738	122.95	6	1	Median	0.93645	1.0208	310.07	7	3	Median	2652900000	1309400000	1343500000	602160000	276600000	325560000	619840000	346620000	273220000	677480000	308760000	368720000	753420000	377470000	375960000	19310	2644	18293	118760;118761;118762;118763;118764;118765;118766;118767;118768;118769;118770;118771;118772;118773;118774;118775;118776;118777;118778;118779;118780;118781;118782;118783	160857;160858;160859;160860;160861;160862;160863;160864;160865;160866;160867;160868;160869;160870;160871;160872;160873;160874;160875;160876;160877;160878;160879;160880;160881;160882;160883;160884;160885;160886;160887;160888;160889;160890;160891;160892;160893;160894;160895;160896;160897;160898;160899	160858	2606		43	
GIVEFSGKPAARK	2	Acetyl (K)	1400.7776	0.77759863	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	2	1	1	2	49.533	39.999	3	0.00010832	21994	160513_QHF_FH_JSI10Kac_6	90.412	75.851			1.1515	1.1163	22.442	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3825	1.6186	NaN	1	0	Median	1.1515	1.1163	NaN	1	0	Median	0.99875	1.0808	NaN	1	0	Median	91788000	38068000	53720000	8060200	0	8060200	49759000	20472000	29287000	8408800	4492600	3916200	25560000	13103000	12457000	19311	2644	18294	118784;118785;118786;118787;118788;118789	160900;160901;160902;160903;160904;160905;160906;160907	160907	2606		8	
GIVEHEEQK	1	Unmodified	1067.5247	0.52473799	5146	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							1	3	3	3	7.1613	6.8122	2;3	3.2839E-07	4910	160511_QHF_FH_JSI10i_2	147.51	73.381			0.91633	0.88897	35.255	10	4	Median	0.94751	0.81547	NaN	1	0	Median	0.65502	0.80028	59.598	3	2	Median	1.0343	1.0808	21.003	3	2	Median	0.88617	0.9691	30.294	3	0	Median	463380000	244360000	219020000	44760000	18704000	26057000	123810000	73224000	50589000	159830000	84049000	75784000	134980000	68386000	66590000	19312	5146	18295	118790;118791;118792;118793;118794;118795;118796;118797;118798;118799	160908;160909;160910;160911;160912;160913;160914;160915;160916	160916			9	
GIVFEDVK	1	Unmodified	905.48583	0.48583328	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.18	5	5	3				4	4		4	6	6	5	51.51	47.917	2	0.00038974	39346	160511_QHF_FH_JSI11i_2	109.86	71.624			1.1317	1.1205	107.32	18	5	Median	1.1308	0.96338	26.739	3	1	Plateau	1.0913	1.2481	168.02	6	1	Median	1.0437	1.0196	21.279	4	1	Median	1.0787	1.1887	104.43	5	2	Median	2670700000	1466900000	1203800000	430930000	194170000	236760000	821130000	551200000	269940000	769420000	380240000	389170000	649260000	341290000	307970000	19313	997	18296	118800;118801;118802;118803;118804;118805;118806;118807;118808;118809;118810;118811;118812;118813;118814;118815;118816;118817;118818;118819;118820	160917;160918;160919;160920;160921;160922;160923;160924;160925;160926;160927;160928;160929;160930;160931;160932;160933;160934;160935;160936;160937;160938;160939;160940;160941;160942;160943;160944;160945;160946;160947;160948;160949;160950;160951	160942			35	
GIVFVIQSQSNSFHAK	1	Unmodified	1760.921	0.9209684	3171	Q6Y288	B3GALTL	Beta-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									8	3	2	1	2	70.574	61.965	2;3	7.1953E-63	33947	160513_QHF_FH_JSI10Kac_6	207.88	156.79			0.94625	0.93228	13.003	7	2	Median	1.0883	0.93228	19.174	3	2	Median	0.72446	0.87415	0.48126	2	0	Median	1.0104	0.98045	NaN	1	0	Median	0.94625	1.0222	NaN	1	0	Median	306700000	189620000	117080000	67119000	32541000	34578000	167930000	115120000	52812000	45552000	26455000	19097000	26095000	15505000	10590000	19314	3171	18297	118821;118822;118823;118824;118825;118826;118827;118828	160952;160953;160954;160955;160956;160957;160958	160957			7	
GIVGGGMMR	0	Unmodified	876.43098	0.43097772	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	30.363	29.564	2	0.00077207	24580	160511_QHF_FH_JSI10i_3	74.415	61.378			1.2302	0.89761	24.106	6	2	Linear	1.3455	1.1123	20.654	2	1	Median	1.1213	1.3308	43.646	2	1	Median	1.2668	1.1842	NaN	1	0	Median	1.0167	1.0189	NaN	1	0	Median	914670000	426890000	487790000	361020000	162370000	198650000	288620000	141930000	146690000	141410000	59215000	82199000	123620000	63380000	60244000	19315	5433	18298	118829;118830;118831;118832;118833;118834	160959;160960;160961;160962;160963;160964;160965	160960			7	
GIVGVENVAELK	1	Unmodified	1226.6871	0.68705229	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	62.488	61.573	2	0.00059867	52927	160511_QHF_FH_JSI12i_2	82.831	51.757			2.0285	2.0814	140.26	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7285	5.6115	NaN	1	1	Median	0.71831	0.77199	NaN	1	1	Median	30929000	14007000	16922000	0	0	0	0	0	0	13402000	3693500	9708600	17527000	10314000	7212900	19316	855	18299	118835;118836;118837	160966;160967;160968;160969	160966			4	
GIVGVENVAELKK	2	Unmodified	1354.782	0.78201531	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.459	51.224	3	0.00029466	43849	160511_QHF_FH_JSI12i_3	74.649	62.591			0.81565	0.81742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81565	0.81742	NaN	1	1	Median	78382000	44297000	34086000	0	0	0	0	0	0	0	0	0	78382000	44297000	34086000	19317	855	18300	118838	160970	160970			1	
GIVILMVDEK	1	Oxidation (M)	1131.6209	0.62094656	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	72.04	61.412	2	0.023721	30524	160513_QHF_FH_JSI12Kac_5	58.981	44.823			0.86101	0.91479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86101	0.91479	NaN	1	0	Median	2103300	1184400	918900	0	0	0	0	0	0	0	0	0	2103300	1184400	918900	19318	1532	18301	118839	160971	160971			0	
GIVKDIIHDPGR	1	Acetyl (K)	1360.7463	0.7462985	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4		2	2	2	60.881	51.018	2;3	6.2863E-19	27558	160513_QHF_FH_JSI11Kac_6	155.15	127.82			0.28541	0.29016	100.71	6	1	Median	NaN	NaN	NaN	0	0	Median	1.2566	1.502	1.021	2	0	Median	0.26328	0.24939	10.979	2	0	Median	0.19323	0.2103	55.954	2	1	Median	351340000	258220000	93121000	0	0	0	51365000	27789000	23576000	270060000	204190000	65872000	29912000	26239000	3672900	19319	2039	18302	118840;118841;118842;118843;118844;118845	160972;160973;160974;160975;160976	160974	2092		4	
GIVLLEELLPK	1	Unmodified	1222.7537	0.75367529	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.8	101.69	2	7.9895E-19	89582	160511_QHF_FH_JSI9i_2	167.97	106.99			0.95901	1.0387	12.61	4	0	Median	1.2794	1.095	NaN	1	0	Median	0.9484	1.1517	NaN	1	0	Median	0.96974	0.98519	NaN	1	0	Median	0.78728	0.86617	NaN	1	0	Median	630370000	329330000	301050000	80454000	36768000	43686000	159790000	79453000	80341000	194990000	93691000	101300000	195140000	119420000	75721000	19320	5588	18303	118846;118847;118848;118849	160977;160978;160979;160980;160981;160982	160979			6	
GIVLVALADGTLAIFHR	0	Unmodified	1765.025	0.025039544	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.576	88.167	3	6.2245E-33	49796	160513_QHF_FH_JSI9Kac_6	163.2	143.6			1.341	0.97543	17.672	4	0	Linear	1.1163	0.9389	NaN	1	0	Median	0.77697	0.90039	NaN	1	0	Median	1.4197	1.3338	NaN	1	0	Median	0.9741	1.0134	NaN	1	0	Median	515180000	246600000	268580000	139250000	59838000	79416000	108250000	62011000	46236000	146230000	59515000	86712000	121450000	65234000	56217000	19321	404	18304	118850;118851;118852;118853	160983;160984;160985	160983			2	
GIVNAVK	1	Unmodified	699.42792	0.42792448	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	17.333	16.629	2	0.013926	14084	160511_QHF_FH_JSI10i_2	67.035	18.274			1.0469	1.2007	12.633	4	1	Median	1.5856	1.3381	NaN	1	0	Median	0.9795	1.206	NaN	1	0	Median	1.0146	0.98814	NaN	1	0	Median	1.0802	1.1954	NaN	1	1	Median	408780000	184030000	224750000	72155000	26481000	45674000	82375000	46904000	35471000	151780000	57603000	94182000	102470000	53041000	49426000	19322	2767	18305	118854;118855;118856;118857;118858	160986;160987;160988;160989;160990;160991;160992	160992			7	
GIVNAVKDPDANGK	2	Unmodified	1396.731	0.73104237	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	23.811	23.483	2;3	0.00011995	19314	160511_QHF_FH_JSI12i_3	82.651	67.752			1.2251	1.1788	55.879	4	1	Median	NaN	NaN	NaN	0	0	Median	0.8357	0.93627	NaN	1	0	Median	1.334	1.2339	NaN	1	0	Median	1.8592	1.9158	75.14	2	1	Median	171240000	73423000	97814000	0	0	0	22394000	10750000	11643000	44256000	21726000	22530000	104590000	40947000	63641000	19323	2767	18306	118859;118860;118861;118862;118863	160993;160994;160995;160996;160997;160998	160996			6	
GIVNEQFLLQR	0	Unmodified	1315.7248	0.72483478	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	66.996	66.105	2	0.00010933	57080	160511_QHF_FH_JSI12i_3	96.618	69.364			1.3273	1.2218	2.2298	2	0	Median	1.5158	1.2412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1622	1.2027	NaN	1	0	Median	492840000	230990000	261850000	27371000	11954000	15417000	0	0	0	0	0	0	465470000	219040000	246430000	19324	1675	18307	118864;118865;118866	160999;161000;161001	161001			1	
GIVPLAK	1	Unmodified	696.45341	0.45341094	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.35	5.14	5	4	5					2	1	4	3	5	5	38.022	35.487	2	0.00608	31080	160511_QHF_FH_JSI11i_3	80.377	43.79			1.0296	0.99256	46.535	16	2	Median	1.0892	0.88631	38.619	4	1	Median	0.81828	0.98981	8.8561	3	0	Plateau	1.0193	1.0183	50.782	4	1	Median	1.0766	1.1945	52.87	5	0	Median	13632000000	6586400000	7045300000	2742800000	1270800000	1472000000	3109400000	1625300000	1484100000	4647700000	2254200000	2393500000	3131700000	1436100000	1695600000	19325	1344	18308	118867;118868;118869;118870;118871;118872;118873;118874;118875;118876;118877;118878;118879;118880;118881;118882;118883	161002;161003;161004;161005;161006;161007;161008;161009;161010;161011;161012;161013;161014;161015;161016;161017;161018;161019;161020;161021;161022;161023;161024;161025;161026;161027;161028;161029;161030;161031;161032;161033;161034;161035;161036;161037	161004			36	
GIVSEEAYILFVR	0	Unmodified	1494.8082	0.80823006	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.858	95.524	2	7.2679E-06	83773	160511_QHF_FH_JSI11i_2	129.16	91.07			2.884	2.9207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.884	2.9207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19819000	8261500	11558000	0	0	0	0	0	0	19819000	8261500	11558000	0	0	0	19326	5523	18309	118884	161038	161038			1	
GIVSEEAYILFVRK	1	Unmodified	1622.9032	0.90319307	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	82.323	82.218	3	1.6792E-05	71389	160511_QHF_FH_JSI12i_3	116.51	102.43			1.2396	1.2063	25.369	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5068	1.4433	NaN	1	0	Median	1.0198	1.0082	NaN	1	0	Median	60615000	37596000	23019000	0	0	0	0	0	0	30324000	17811000	12513000	30291000	19785000	10506000	19327	5523	18310	118885;118886;118887	161039;161040;161041;161042	161042			4	
GIVSLSDILQALVLTGGEK	1	Unmodified	1912.0881	0.088093311	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			9								3	3	3	103.53	103.51	2;3	2.0772E-27	90278	160511_QHF_FH_JSI12i_3	218.31	177.73			0.90682	0.93394	19.767	5	5	Median	NaN	NaN	NaN	0	0	Median	0.56741	0.64014	NaN	1	1	Median	0.90722	0.85861	21.453	2	2	Median	0.9295	0.9578	3.569	2	2	Median	201310000	116370000	84935000	0	0	0	23097000	15404000	7693300	54151000	30391000	23760000	124060000	70577000	53482000	19328	1825	18311	118888;118889;118890;118891;118892;118893;118894;118895;118896	161043;161044;161045;161046;161047;161048;161049;161050;161051	161050			9	
GIVSYLWTR	0	Unmodified	1093.592	0.59202969	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	77.345	67.903	2	0.001011	38009	160513_QHF_FH_JSI10Kac_6	103.87	77.27			0.71589	0.75024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71589	0.75024	NaN	1	0	Median	18586000	10959000	7626300	0	0	0	0	0	0	0	0	0	18586000	10959000	7626300	19329	3480	18312	118897;118898	161052;161053	161053			2	
GIVSYTEK	1	Unmodified	895.4651	0.46509784	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	23.269	22.455	2	0.0017787	18626	160511_QHF_FH_JSI12i_2	85.064	50.256			1.0692	1.2055	12.679	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.79689	0.96858	NaN	1	1	Median	1.0144	1.0127	NaN	1	1	Median	1.0692	1.2294	NaN	1	0	Median	145450000	67147000	78298000	0	0	0	37234000	18778000	18456000	53722000	23157000	30565000	54489000	25212000	29278000	19330	2835	18313	118899;118900;118901;118902	161054;161055;161056;161057	161054			4	
GIVTFQFR	0	Unmodified	966.5287	0.52870115	1279	P26572	MGAT1	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	71.479	62.596	2	0.0006976	34341	160513_QHF_FH_JSI10Kac_6	107.67	76.384			1.1816	1.1558	5.2472	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97655	1.1558	NaN	1	0	Median	1.2676	1.2429	NaN	1	0	Median	1.1816	1.2798	NaN	1	0	Median	57669000	27876000	29793000	0	0	0	37462000	18770000	18692000	11403000	5048300	6355100	8803100	4057700	4745500	19331	1279	18314	118903;118904;118905	161058;161059;161060	161060			3	
GIVVLGINR	0	Unmodified	939.58655	0.58655038	2472	Q13825	AUH	Methylglutaconyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	66.046	56.596	2	0.0022603	30626	160513_QHF_FH_JSI11Kac_6	79.597	22.038			1.0239	1.058	24.559	5	0	Median	1.658	1.423	NaN	1	0	Median	0.92454	1.0998	15.297	2	0	Median	1.0872	1.058	NaN	1	0	Median	0.69897	0.74073	NaN	1	0	Median	380370000	188890000	191480000	62503000	23156000	39347000	210570000	114580000	95982000	86465000	39084000	47382000	20835000	12066000	8768900	19332	2472	18315	118906;118907;118908;118909;118910	161061;161062;161063;161064	161061			3	
GIVVTAYSPLGSPDRPWAK	1	Unmodified	2013.0684	0.068360922	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		74.724	73.762	3	9.7033E-05	61797	160511_QHF_FH_JSI10i_3	62.765	53.016			0.80073	1.1742	29.444	3	1	Plateau	0.80073	0.66741	NaN	1	1	Median	0.7241	0.8048	NaN	1	0	Median	1.285	1.1886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121270000	59465000	61804000	13481000	7562400	5918100	20313000	11836000	8476700	87476000	40067000	47409000	0	0	0	19333	1067	18316	118911;118912;118913	161065;161066;161067;161068	161067			4	
GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR	1	Unmodified	3261.667	0.66699213	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									2	1	1			81.912	74.803	4	6.4576E-20	41849	160513_QHF_FH_JSI10Kac_6	112.39	95.766			0.84472	0.85178	13.491	2	1	Median	0.9071	0.77428	NaN	1	1	Median	0.78663	0.93704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184570000	116910000	67666000	26955000	19132000	7822300	157620000	97773000	59843000	0	0	0	0	0	0	19334	1067	18317	118914;118915	161069;161070;161071	161070			3	
GIVVYTGDR	0	Unmodified	978.51345	0.51344502	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.39	4	4	2			3	3	4	3	5	7	6	5	36.729	30.988	2	2.1385E-05	26276	160511_QHF_FH_JSI12i_2	106.36	77.844			0.9621	1.0331	9.254	23	1	Median	1.3331	1.109	8.9452	5	0	Median	0.83428	0.98217	6.5311	7	0	Median	1.0546	1.0496	12.4	6	1	Median	0.95304	1.0331	3.019	5	0	Median	2934600000	1443900000	1490700000	545210000	223420000	321800000	814040000	414430000	399610000	956700000	475380000	481320000	618590000	330630000	287960000	19335	821	18318	118916;118917;118918;118919;118920;118921;118922;118923;118924;118925;118926;118927;118928;118929;118930;118931;118932;118933;118934;118935;118936;118937;118938	161072;161073;161074;161075;161076;161077;161078;161079;161080;161081;161082;161083;161084;161085;161086;161087;161088;161089;161090;161091;161092;161093;161094;161095;161096;161097;161098;161099;161100;161101;161102;161103;161104	161074			32	
GIVYDTGGLSIK	1	Unmodified	1221.6605	0.66050319	3630	Q8NDH3	NPEPL1	Probable aminopeptidase NPEPL1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.005	59.613	2	0.0078288	53884	160511_QHF_FH_JSI10i_1	50.284	30.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19336	3630	18319	118939	161105	161105			1	
GIVYIFNGR	0	Unmodified	1037.5658	0.56581494	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.5	0.5								3	3	2	2	2		69.701	60.026	2	3.4584E-05	31823	160513_QHF_FH_JSI9Kac_6	125.08	106.3			0.99586	0.95423	23.323	6	0	Median	1.0628	0.91222	3.0187	2	0	Median	0.83213	0.98998	1.8541	2	0	Median	1.2862	1.2356	41.49	2	0	Median	NaN	NaN	NaN	0	0	Median	429310000	218510000	210800000	81919000	34999000	46920000	252940000	139360000	113580000	94451000	44149000	50301000	0	0	0	19337	859	18320	118940;118941;118942;118943;118944;118945	161106;161107;161108;161109;161110	161110			4	
GIWHNDNK	1	Unmodified	982.46208	0.46207815	1017	P12277;P06732	CKB;CKM	Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	10.546	10.197	2;3	2.4461E-10	8050	160511_QHF_FH_JSI9i_3	166.96	138.45			0.99824	0.96569	31.728	9	1	Median	1.934	1.5373	24.981	2	0	Median	1.2967	1.4676	42.597	3	1	Median	0.96721	0.9227	6.4395	2	0	Median	0.9089	0.91615	0.86698	2	0	Median	5501600000	2320000000	3181600000	791850000	291820000	500030000	1249500000	583420000	666070000	1355700000	543930000	811750000	2104600000	900810000	1203800000	19338	1017	18321	118946;118947;118948;118949;118950;118951;118952;118953;118954	161111;161112;161113;161114;161115;161116;161117;161118;161119;161120;161121;161122;161123;161124;161125	161121			15	
GIWKPETPQDSSGLAPFK	2	Unmodified	1956.9945	0.99452728	3011	Q641Q2	FAM21A	WASH complex subunit FAM21A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.283	66.466	3	1.5934E-12	58995	160511_QHF_FH_JSI11i_3	153.75	131.91			1.0108	0.92073	8.7935	4	0	Median	1.099	0.89435	NaN	1	0	Median	0.79699	0.89357	NaN	1	0	Median	1.1413	1.0772	NaN	1	0	Median	0.92964	0.94788	NaN	1	0	Median	664210000	341470000	322740000	81039000	39047000	41992000	138490000	86963000	51530000	200430000	92848000	107590000	244240000	122610000	121630000	19339	3011	18322	118955;118956;118957;118958	161126;161127;161128;161129;161130;161131;161132;161133	161126			8	
GIWLEAGK	1	Unmodified	872.4756	0.47560295	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	47.091	46.249	2	0.0010531	40527	160511_QHF_FH_JSI11i_3	94.662	73.508			1.1662	1.1087	8.9483	5	0	Median	1.3279	1.1111	NaN	1	0	Median	0.79911	0.9916	NaN	1	0	Median	1.1662	1.1087	NaN	1	0	Median	1.0957	1.1697	11.76	2	0	Median	364280000	191480000	172800000	14508000	6572700	7935700	110790000	63719000	47076000	61040000	33820000	27220000	177940000	87370000	90565000	19340	5616	18323	118959;118960;118961;118962;118963;118964	161134;161135;161136;161137;161138;161139;161140;161141	161134			8	
GIWSTTPSNER	0	Unmodified	1246.5942	0.59421454	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			32.272	31.061	2	0.0013743	27016	160511_QHF_FH_JSI9i_2	76.465	54.958			1.2933	1.2875	59.044	2	2	Median	2.2401	1.9546	NaN	1	1	Median	0.74669	0.84803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24227000	9236400	14990000	12351000	2009900	10341000	11876000	7226500	4649700	0	0	0	0	0	0	19341	4750	18324	118965;118966;118967	161142;161143;161144	161144			3	
GIYALAAR	0	Unmodified	833.47594	0.4759373	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		44.038	34.397	2	0.0064667	18838	160513_QHF_FH_JSI11Kac_6	66.138	38.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19342	95	18325	118968	161145	161145			1	
GIYAMASR	0	Unmodified	867.42727	0.42727255	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		25.117	23.842	2	0.009156	19679	160511_QHF_FH_JSI10i_3	65.252	39.143			1.0627	1.2274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0627	1.2274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37014000	17193000	19820000	0	0	0	37014000	17193000	19820000	0	0	0	0	0	0	19343	4300	18326	118969;118970	161146;161147	161146			2	
GIYAVGDVCGK	1	Unmodified	1137.5488	0.54884425	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.74	39.438	2	0.00011478	35554	160511_QHF_FH_JSI11i_1	91.867	70.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19344	765	18327	118971	161148	161148			1	
GIYAYGFEK	1	Unmodified	1046.5073	0.50729701	1917;1481;2519	P38919;P60842;Q14240	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.96	6.43	4	5	5			2	2	4	4	6	7	6	7	53.334	48.265	2	1.576E-06	41662	160511_QHF_FH_JSI11i_2	145.63	118.11			0.99427	1.0286	43.591	26	4	Median	1.1257	0.94803	39.533	6	1	Median	0.88286	1.037	12.267	7	0	Median	0.95525	0.9496	9.218	6	0	Median	0.99815	1.0785	77.924	7	3	Median	19326000000	9421200000	9904800000	4664900000	2416700000	2248200000	4523300000	2200300000	2323000000	5806000000	2584400000	3221500000	4331900000	2219800000	2112100000	19345	1481;1917;2519	18328	118972;118973;118974;118975;118976;118977;118978;118979;118980;118981;118982;118983;118984;118985;118986;118987;118988;118989;118990;118991;118992;118993;118994;118995;118996;118997	161149;161150;161151;161152;161153;161154;161155;161156;161157;161158;161159;161160;161161;161162;161163;161164;161165;161166;161167;161168;161169;161170;161171;161172;161173;161174;161175;161176;161177;161178;161179;161180;161181;161182;161183;161184;161185;161186;161187;161188;161189;161190;161191;161192;161193;161194;161195;161196;161197;161198;161199;161200;161201;161202;161203;161204;161205;161206;161207;161208;161209;161210;161211;161212	161187			64	
GIYAYGFEKPSAIQQR	1	Unmodified	1826.9315	0.93153309	1917;1481;2519	P38919;P60842;Q14240	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			54.566	52.991	3	0.000114	44416	160511_QHF_FH_JSI10i_3	71.344	48.518			0.19337	0.16122	NaN	1	1	Median	0.19337	0.16122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33425000	27950000	5474700	33425000	27950000	5474700	0	0	0	0	0	0	0	0	0	19346	1481;1917;2519	18329	118998;118999	161213;161214	161213			2	
GIYAYGFEKPSAIQQR	1	Acetyl (K)	1868.9421	0.94209778	1917;1481;2519	P38919;P60842;Q14240	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	1	0	0	1			By MS/MS	By matching	15.6	0.49								2	3			4	1	77.052	67.179	2;3	1.3519E-62	36700	160513_QHF_FH_JSI11Kac_6	205.46	182.93			0.35831	0.35629	22.82	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35145	0.3495	5.3948	4	0	Median	0.54828	0.57044	NaN	1	0	Median	164240000	118060000	46176000	0	0	0	0	0	0	143820000	105410000	38407000	20416000	12646000	7769700	19347	1481;1917;2519	18329	119000;119001;119002;119003;119004	161215;161216;161217;161218	161216	1482		4	
GIYETPAGTILYHAHLDIEAFTMDR	0	Unmodified	2833.3745	0.37451528	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	1	2	3	2	94.731	88.672	3;4	2.337E-111	46930	160513_QHF_FH_JSI9Kac_6	242.9	236.54			0.96827	0.97087	17.141	8	0	Median	1.2962	1.097	NaN	1	0	Median	0.67988	0.81135	13.595	2	0	Median	1.1328	1.0833	6.4405	3	0	Median	0.82829	0.84045	8.8697	2	0	Median	3394600000	1640600000	1754000000	436260000	182170000	254090000	861020000	452470000	408550000	1154100000	528760000	625370000	943190000	477210000	465970000	19348	779	18330	119005;119006;119007;119008;119009;119010;119011;119012	161219;161220;161221;161222;161223;161224;161225;161226;161227	161223			7	
GIYETPAGTILYHAHLDIEAFTMDR	0	Oxidation (M)	2849.3694	0.3694299	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		90.925	83.279	3;4	2.8504E-27	48124	160513_QHF_FH_JSI10Kac_6	138.93	131.82			1.0703	0.97333	7.4539	5	1	Median	1.1727	1.012	13.263	2	0	Median	0.82669	0.9642	1.3322	2	1	Median	1.1062	1.0399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	729420000	330420000	398990000	352010000	140510000	211500000	229520000	122840000	106680000	147890000	67079000	80810000	0	0	0	19349	779	18330	119013;119014;119015;119016;119017	161228;161229;161230;161231;161232	161231		294	4	
GIYFADMVSK	1	Unmodified	1129.5478	0.54778161	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.39	6.75	3	6					2	4	3	4	5	4	5	70.673	65.374	2	2.2811E-07	60006	160511_QHF_FH_JSI11i_1	115.71	81.462			1.1148	1.1026	25.793	18	7	Median	1.2785	1.0822	10.169	4	2	Median	0.9134	1.1008	45.049	5	0	Median	1.103	1.0768	9.5118	4	2	Median	1.0915	1.1423	16.843	5	3	Median	3184500000	1688200000	1496300000	749400000	301800000	447600000	507830000	370450000	137380000	1418200000	762640000	655560000	509090000	253340000	255750000	19350	939	18331	119018;119019;119020;119021;119022;119023;119024;119025;119026;119027;119028;119029;119030;119031;119032;119033;119034;119035	161233;161234;161235;161236;161237;161238;161239;161240;161241;161242;161243;161244;161245;161246;161247;161248;161249;161250	161233			18	
GIYFADMVSK	1	Oxidation (M)	1145.5427	0.54269624	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	0				By MS/MS	15.5	0.5								1	1				2	58.107	47.429	2	0.0056445	24296	160513_QHF_FH_JSI12Kac_5	75.378	44.305			1.0997	1.2226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0997	1.2226	NaN	1	1	Median	4113200	2267700	1845500	0	0	0	0	0	0	0	0	0	4113200	2267700	1845500	19351	939	18331	119036;119037	161251;161252	161251		513	2	
GIYFFSLNVHSWNYK	1	Unmodified	1873.9152	0.91515474	4517	Q9BXI9	C1QTNF6	Complement C1q tumor necrosis factor-related protein 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	87.174	77.731	3	7.6003E-05	41576	160513_QHF_FH_JSI12Kac_6	87.519	76.24			2.3868	2.5172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3868	2.5172	NaN	1	0	Median	105220000	34084000	71139000	0	0	0	0	0	0	0	0	0	105220000	34084000	71139000	19352	4517	18332	119038;119039	161253;161254	161253			2	
GIYHSALK	1	Unmodified	887.4865	0.48650199	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	13.357	13.131	2;3	0.00053665	10007	160511_QHF_FH_JSI12i_3	69.905	56.868			0.9382	1.0465	13.949	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9382	1.0465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0495	1.0747	19.607	2	0	Median	394260000	231670000	162600000	0	0	0	39594000	17803000	21791000	0	0	0	354670000	213860000	140800000	19353	2993	18333	119040;119041;119042;119043	161255;161256;161257;161258	161258			4	
GIYLWDVEGRK	1	Unmodified	1334.6983	0.69828568	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	60.475	60.207	2	0.0017613	51840	160511_QHF_FH_JSI12i_3	71.614	50.642			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19354	808	18334	119044	161259	161259			1	
GIYPHEPK	1	Unmodified	939.48142	0.48141661	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.061	14.21	2	0.050051	11258	160511_QHF_FH_JSI12i_2	46.016	24.488			0.801	0.87508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.801	0.87508	NaN	1	1	Median	18486000	10892000	7594000	0	0	0	0	0	0	0	0	0	18486000	10892000	7594000	19355	150	18335	119045	161260	161260			1	
GIYPSETFTR	0	Unmodified	1169.5717	0.57168818	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	44.222	43.347	2	9.7684E-06	36973	160511_QHF_FH_JSI12i_2	105.1	58.02			0.68059	0.43944	36.925	5	2	Linear	0.68059	0.58185	NaN	1	0	Median	0.28626	0.35971	NaN	1	0	Median	0.86014	0.86485	6.2327	2	2	Median	0.66564	0.73774	NaN	1	0	Median	520700000	305200000	215510000	88139000	39237000	48902000	95588000	65005000	30583000	259030000	150170000	108860000	77949000	50785000	27164000	19356	2379	18336	119046;119047;119048;119049;119050	161261;161262;161263;161264;161265;161266;161267	161261			7	
GIYQSLEGAVQAGQLK	1	Unmodified	1660.8784	0.87843489	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							2	4	2	2	71.185	70.474	2;3	2.5261E-11	62632	160511_QHF_FH_JSI10i_2	191.29	176.41			1.01	0.93677	12.332	9	4	Median	1.0345	0.89063	0.78876	2	0	Median	0.72222	0.8796	14.745	3	2	Median	1.0314	1.0247	1.5441	2	0	Median	0.95143	1.0044	9.8521	2	2	Median	418280000	227490000	190790000	82688000	37651000	45037000	110330000	72558000	37773000	144300000	76633000	67668000	80961000	40651000	40310000	19357	2636	18337	119051;119052;119053;119054;119055;119056;119057;119058;119059;119060	161268;161269;161270;161271;161272;161273;161274;161275;161276;161277;161278;161279;161280;161281;161282	161279			15	
GIYSFGLMETNFYDQAEK	1	Unmodified	2111.951	0.95100748	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									2	2	95.387	95.086	2;3	1.8763E-11	82270	160511_QHF_FH_JSI12i_3	147.18	131.09			0.71592	0.71943	41.999	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59642	0.58113	25.265	2	2	Median	0.96716	0.99881	41.478	2	1	Median	36988000	22638000	14349000	0	0	0	0	0	0	14259000	9751200	4507700	22729000	12887000	9841600	19358	2918	18338	119061;119062;119063;119064	161283;161284;161285;161286;161287;161288	161288			6	
GIYTGLSAGLLR	0	Unmodified	1219.6925	0.69247202	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.5	6.23		4	3						3	3	3	4		73.743	70.485	2	4.3501E-12	37178	160513_QHF_FH_JSI11Kac_6	123.75	62.776			1.1038	1.1052	20.418	9	1	Median	1.2657	1.0105	7.7818	3	0	Median	0.96836	1.1052	22.984	3	0	Plateau	0.97459	0.91667	17.056	3	1	Median	NaN	NaN	NaN	0	0	Median	651300000	328130000	323170000	210760000	98091000	112670000	240960000	120900000	120060000	199580000	109130000	90450000	0	0	0	19359	2198	18339	119065;119066;119067;119068;119069;119070;119071;119072;119073;119074	161289;161290;161291;161292;161293;161294;161295;161296;161297;161298;161299;161300;161301	161293			10	
GIYVIQAPK	1	Unmodified	987.57532	0.57531699	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		9.67	6.13	1						2			1	1	1		58.535	47.698	2	0.0015938	26255	160513_QHF_FH_JSI10Kac_4	84.244	66.858			1.3603	1.4561	14.814	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3762	1.6169	NaN	1	0	Median	1.3446	1.3113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11659000	5624200	6035200	0	0	0	6004300	2965200	3039100	5655200	2659000	2996100	0	0	0	19360	3009	18340	119075;119076;119077	161302;161303	161302			2	
GKAELEEQKRLLDRTVDR	2	2 Acetyl (K)	2239.1921	0.19205789	5219	Q9P2M7	CGN	Cingulin	yes	yes	2	0	0	4		By MS/MS			16	0									1		1			102.18	96.462	2	0.015123	57026	160513_QHF_FH_JSI10Kac_6	53.034	6.8753			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43761000	43761000	0	0	0	0	43761000	43761000	0	0	0	0	0	0	0	19361	5219	18341	119078	161304	161304	3338;3339		1	
GKAGKGLGKGGAK	4	3 Acetyl (K)	1253.7092	0.70918471	4278	Q99525	HIST1H4G	Histone H4-like protein type G	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	0.913					3	10	9	5		4	9	6	8	33.758	24.026	2;3	3.1429E-20	5792	160513_QHF_FH_JSI9Kac_3	150.46	79.006			1.1202	1.078	31.916	27	0	Median	0.81581	0.67025	20.43	4	0	Median	0.60851	0.72003	8.5992	9	0	Median	1.2328	1.22	6.372	6	0	Median	1.2786	1.3718	8.5235	8	0	Median	1610100000	830970000	779160000	347640000	178160000	169480000	397100000	254800000	142290000	316270000	138900000	177370000	549120000	259110000	290020000	19362	4278	18342	119079;119080;119081;119082;119083;119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094;119095;119096;119097;119098;119099;119100;119101;119102;119103;119104;119105	161305;161306;161307;161308;161309;161310;161311;161312;161313;161314;161315;161316;161317;161318;161319;161320;161321;161322;161323;161324;161325;161326;161327;161328;161329;161330;161331;161332;161333;161334;161335;161336;161337;161338;161339;161340;161341	161321	3100;3101;3102		37	
GKASFLYSLPHR	1	Acetyl (K)	1416.7514	0.75138388	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	69.82	60.637	3	0.019964	32096	160513_QHF_FH_JSI9Kac_6	33.526	30.254			1.1683	1.1075	47.543	2	0	Median	1.7925	1.55	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76148	0.79128	NaN	1	0	Median	31659000	14272000	17388000	12826000	3967700	8857900	0	0	0	0	0	0	18834000	10304000	8529600	19363	3826	18343	119106;119107;119108	161342;161343	161343	2952		2	
GKDAASSTK	2	Acetyl (K)	905.44543	0.44542503	2713	Q15814	TBCC	Tubulin-specific chaperone C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	1	2	5.3774	-1.8347	2	0.0081735	1514	160513_QHF_FH_JSI10Kac_2	65.305	28.285			0.62953	0.5857	84.788	3	0	Median	NaN	NaN	NaN	0	0	Median	1.7285	2.0207	NaN	1	0	Median	0.62953	0.5857	NaN	1	0	Median	0.37034	0.39891	NaN	1	0	Median	8815500	4589600	4225900	0	0	0	4455500	1389400	3066100	1530900	1033800	497160	2829000	2166400	662620	19364	2713	18344	119109;119110;119111;119112	161344;161345;161346;161347;161348;161349	161346	2643		6	
GKDEAMAIGGHWSPSLDGPDPEK	2	Unmodified	2393.0958	0.095774239	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		57.584	57.584	4	7.3611E-07	51062	160511_QHF_FH_JSI11i_3	64.962	57.516			0.67993	0.64356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67993	0.64356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36025000	21181000	14845000	0	0	0	0	0	0	36025000	21181000	14845000	0	0	0	19365	3438	18345	119113	161350	161350			1	
GKDISTILDEER	1	Acetyl (K)	1416.7096	0.70963822	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.5	0.5						2	2				3		1	74.2	65.021	2	8.3621E-12	32160	160513_QHF_FH_JSI10Kac_3	121.08	75.079			0.79281	0.89385	25.677	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63732	0.74545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98623	1.0718	NaN	1	0	Median	13253000	8440700	4812000	0	0	0	7359700	5227800	2131900	0	0	0	5893000	3212900	2680200	19366	4253	18346	119114;119115;119116;119117	161351;161352;161353;161354;161355	161355	3086		5	
GKDISTILDEERK	2	Acetyl (K)	1544.8046	0.80460124	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.57							6	10	1	3	6	2	6	67.722	57.059	2;3	2.1104E-47	28655	160513_QHF_FH_JSI12Kac_5	226.24	164.2			0.77333	0.71845	264.1	15	6	Median	1.5148	1.417	95.717	3	0	Plateau	0.6001	0.71845	327.16	5	3	Median	0.90774	0.89959	2.2601	2	0	Median	0.61189	0.65661	363.07	5	3	Median	1715300000	787170000	928160000	158740000	67468000	91277000	513520000	237280000	276240000	257340000	131830000	125520000	785730000	350600000	435130000	19367	4253	18347	119118;119119;119120;119121;119122;119123;119124;119125;119126;119127;119128;119129;119130;119131;119132;119133;119134	161356;161357;161358;161359;161360;161361;161362;161363;161364;161365;161366;161367;161368;161369;161370;161371;161372	161368	3086		17	
GKDISTITGHR	1	Acetyl (K)	1225.6415	0.64149908	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.983						4	8	11	8	7	9	8	7	36.797	26.99	2;3	1.9539E-79	16109	160513_QHF_FH_JSI9Kac_6	250.72	188.26			0.99605	0.96613	179.22	29	7	Median	1.0443	0.93311	271.83	5	2	Median	0.75338	0.89873	236.09	9	3	Median	1.0744	1.0511	60.915	8	1	Median	0.89395	0.95181	96.826	7	1	Median	8106200000	3083400000	5022800000	1855900000	283030000	1572900000	2419400000	1688800000	730520000	1625800000	341090000	1284700000	2205100000	770470000	1434700000	19368	4253	18348	119135;119136;119137;119138;119139;119140;119141;119142;119143;119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158;119159;119160;119161;119162;119163;119164;119165	161373;161374;161375;161376;161377;161378;161379;161380;161381;161382;161383;161384;161385;161386;161387;161388;161389;161390;161391;161392;161393;161394;161395;161396;161397;161398;161399;161400;161401;161402;161403;161404;161405;161406;161407;161408;161409;161410;161411;161412;161413;161414;161415;161416;161417;161418;161419;161420;161421;161422;161423;161424;161425;161426	161418	3087		53	
GKDPNAPK	2	Acetyl (K)	867.44503	0.4450311	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	12	0					3						1	1	1	9.2298	1.9834	2	0.0001738	3182	160513_QHF_FH_JSI12Kac_2	123.98	79.291			0.86155	0.98795	6.144	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86155	0.98795	NaN	1	0	Median	1.0309	0.988	NaN	1	0	Median	0.80327	0.88823	NaN	1	0	Median	143220000	76694000	66529000	0	0	0	72133000	39407000	32726000	15668000	7080200	8587500	55423000	30207000	25216000	19369	2277	18349	119166;119167;119168	161427;161428;161429;161430	161430	2368		4	
GKDPQPVEEEK	2	Unmodified	1254.6092	0.6091959	4061	Q96EX1	SMIM12	Small integral membrane protein 12	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			8.2875	8.0515	2	0.011578	5865	160511_QHF_FH_JSI10i_1	83.182	54.784			0.52486	0.59604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52486	0.59604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25037000	15933000	9104700	0	0	0	25037000	15933000	9104700	0	0	0	0	0	0	19370	4061	18350	119169	161431	161431			1	
GKDSLYAQGK	2	Acetyl (K)	1107.556	0.55603812	2122	P83881	RPL36A	60S ribosomal protein L36a	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	29.642	21.473	2	0.01391	12881	160513_QHF_FH_JSI12Kac_3	56.729	23.889			0.72466	0.74937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72466	0.74937	NaN	1	0	Median	1289600	863740	425840	0	0	0	0	0	0	0	0	0	1289600	863740	425840	19371	2122	18351	119170	161432	161432	2223		1	
GKDSTEMR	1	Acetyl (K)	964.42839	0.42839476	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	10.457	3.1992	2	0.0014627	4159	160513_QHF_FH_JSI10Kac_3	103.56	76.601			0.64846	0.64223	47.684	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2191	1.4478	NaN	1	0	Median	0.64846	0.64223	NaN	1	0	Median	0.5871	0.62607	NaN	1	0	Median	24888000	13770000	11118000	0	0	0	8636800	3170000	5466800	6486600	3957900	2528700	9764800	6642400	3122400	19372	1766	18352	119171;119172;119173	161433;161434;161435;161436	161436	1783		4	
GKDSTEMR	1	Acetyl (K);Oxidation (M)	980.42331	0.42330938	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13	0						2					1		1	5.1152	-2.1337	2	0.0091912	1555	160513_QHF_FH_JSI10Kac_3	76.221	53.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9811100	6082800	3728300	0	0	0	3728300	0	3728300	0	0	0	6082800	6082800	0	19373	1766	18352	119174;119175	161437;161438	161438	1783	1460	2	
GKEDALVTK	2	Unmodified	959.52876	0.52876073	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	10.969	10.524	2	0.025998	8171	160511_QHF_FH_JSI12i_2	58.743	33.169			0.56729	0.60681	9.5458	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64709	0.64918	NaN	1	0	Median	0.49733	0.5672	NaN	1	0	Median	133600000	73327000	60270000	0	0	0	0	0	0	68335000	37433000	30903000	65262000	35895000	29367000	19374	1203	18353	119176;119177	161439;161440	161439			2	
GKEDEGEEAASPMLQIQR	1	Unmodified	1986.9317	0.93166902	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	2	2	2	44.699	44.037	2;3	6.0729E-10	39612	160511_QHF_FH_JSI10i_1	137.46	121.92			1.0111	0.99757	33.636	8	2	Median	1.4475	1.2072	0.12435	2	0	Median	0.75554	0.86908	18.108	2	1	Median	1.0111	0.98076	3.7961	2	0	Median	0.67553	0.69134	65.741	2	1	Median	636810000	291140000	345680000	149870000	64805000	85065000	179200000	87128000	92071000	167840000	70700000	97137000	139910000	68505000	71403000	19375	2517	18354	119178;119179;119180;119181;119182;119183;119184;119185	161441;161442;161443;161444;161445;161446;161447;161448;161449;161450;161451	161449			11	
GKEDPWNSITSGALTGAILAAR	1	Unmodified	2227.1597	0.15969512	4291	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			99.527	99.294	3	7.8695E-11	81952	160511_QHF_FH_JSI10i_3	112.58	103.42			1.3846	1.1687	19.792	3	0	Median	1.6188	1.3417	19.529	2	0	Median	0.91182	1.0496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67681000	29231000	38450000	29214000	9899200	19315000	38467000	19332000	19136000	0	0	0	0	0	0	19376	4291	18355	119186;119187;119188	161452;161453;161454;161455;161456	161453			5	
GKEDPWNSITSGALTGAVLAAR	1	Unmodified	2213.144	0.14404506	452	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	91.835	91.264	3	2.7972E-19	81040	160511_QHF_FH_JSI11i_3	126.02	121.4			0.88183	0.82367	62.382	5	3	Median	0.84627	0.71002	109.95	2	2	Median	0.64499	0.76691	57.632	2	1	Median	0.88183	0.82367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	251860000	156220000	95642000	76903000	54634000	22269000	78244000	49933000	28311000	96711000	51649000	45062000	0	0	0	19377	452	18356	119189;119190;119191;119192;119193;119194	161457;161458;161459;161460;161461;161462;161463	161457			7	
GKEEQMNTMK	2	Unmodified	1194.5373	0.53729328	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	7.9413	7.6417	2	6.937E-09	5079	160511_QHF_FH_JSI12i_3	136.48	103.63			0.88299	0.95328	43.19	4	0	Median	NaN	NaN	NaN	0	0	Median	0.43378	0.53076	NaN	1	0	Median	1.2564	1.277	NaN	1	0	Median	0.88299	0.95328	39.074	2	0	Median	279110000	156630000	122480000	0	0	0	58429000	40976000	17454000	75451000	31844000	43606000	145230000	83809000	61424000	19378	3328	18357	119195;119196;119197;119198	161464;161465	161465			2	
GKEETEGFK	2	Unmodified	1023.4873	0.48728985	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	8.0841	7.7504	2	0.0010927	5227	160511_QHF_FH_JSI12i_3	88.496	60.321			1.157	1.2269	36.369	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.72056	0.88219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.157	1.2269	43.818	2	0	Median	112250000	61686000	50567000	0	0	0	33032000	19945000	13086000	0	0	0	79221000	41741000	37481000	19379	3090	18358	119199;119200;119201	161466;161467;161468;161469;161470	161470			5	
GKELRPK	2	Acetyl (K)	868.51305	0.51305109	4163	Q96L91	EP400	E1A-binding protein p400	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			12.278	5.4419	3	0.024572	4710	160513_QHF_FH_JSI10Kac_6	69.198	32.497			0.87595	1.0487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87595	1.0487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9436400	5054400	4382100	0	0	0	9436400	5054400	4382100	0	0	0	0	0	0	19380	4163	18359	119202	161471	161471	3064		1	
GKEVDNFVDK	2	Acetyl (K)	1191.5772	0.57716749	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	48.773	39.74	2	0.036295	21657	160513_QHF_FH_JSI12Kac_3	53.751	34.657			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1504200	0	1504200	0	0	0	0	0	0	0	0	0	1504200	0	1504200	19381	1620	18360	119203	161472	161472			1	
GKFDGAK	2	Acetyl (K)	763.38645	0.38645359	278	O15347	HMGB3	High mobility group protein B3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		18.928	11.445	2	0.044745	8223	160513_QHF_FH_JSI11Kac_4	61.962	36.964			1.1417	1.3102	7.498	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0332	1.2332	NaN	1	0	Median	1.2358	1.2161	10.542	2	0	Median	NaN	NaN	NaN	0	0	Median	95184000	47132000	48053000	0	0	0	25837000	12949000	12888000	69347000	34182000	35165000	0	0	0	19382	278	18361	119204;119205;119206	161473;161474;161475	161474	148		3	
GKFDVQWIFVK	2	Unmodified	1365.7445	0.74450759	4548	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	10.8	6.37			2						3	1		2	2	83.545	78.03	3	9.7571E-05	72931	160511_QHF_FH_JSI12i_3	79.693	70.739			0.87186	0.885	33.667	5	0	Median	1.0504	0.90972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6593	0.6313	32.412	2	0	Median	1.0154	1.0635	25.988	2	0	Median	149920000	79369000	70553000	46848000	24786000	22062000	0	0	0	46670000	25487000	21182000	56404000	29095000	27308000	19383	4548	18362	119207;119208;119209;119210;119211	161476;161477;161478;161479	161478			4	
GKFEDMAK	2	Unmodified	924.4375	0.43750288	928;1231	P09429;B2RPK0;P23497	HMGB1;HMGB1P1;SP100	High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	5.93		8	10					2	5	5	7	7	6	16.116	13.544	2;3	0.00010559	11491	160511_QHF_FH_JSI10i_2	106.42	74.489			0.87798	0.85721	48.948	25	9	Median	1.0728	0.85721	22.387	5	1	Median	0.63637	0.7668	28.143	7	2	Median	1.0221	1.0411	53.846	7	3	Median	0.68881	0.77408	72.22	6	3	Median	19649000000	8897200000	10752000000	1944100000	746750000	1197400000	3212400000	1418600000	1793800000	5806700000	2299800000	3506900000	8685800000	4432100000	4253700000	19384	928;1231	18363	119212;119213;119214;119215;119216;119217;119218;119219;119220;119221;119222;119223;119224;119225;119226;119227;119228;119229;119230;119231;119232;119233;119234;119235;119236	161480;161481;161482;161483;161484;161485;161486;161487;161488;161489;161490;161491;161492;161493;161494;161495;161496;161497;161498;161499;161500;161501;161502;161503;161504;161505;161506;161507;161508;161509;161510;161511;161512;161513;161514;161515	161505			36	
GKFEDMAK	2	Acetyl (K)	966.44807	0.44806757	928;1231	P09429;B2RPK0;P23497	HMGB1;HMGB1P1;SP100	High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	40.011	30.192	2	0.0013611	17472	160513_QHF_FH_JSI10Kac_4	104.2	57.119			0.595	0.63983	68.609	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86657	1.0393	NaN	1	0	Median	0.40854	0.39388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69140000	41856000	27284000	0	0	0	28358000	13612000	14746000	40782000	28243000	12539000	0	0	0	19385	928;1231	18363	119237;119238;119239	161516;161517;161518;161519;161520	161516	680		5	
GKFEDMAK	2	Oxidation (M)	940.43242	0.43241751	928;1231	P09429;B2RPK0;P23497	HMGB1;HMGB1P1;SP100	High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100	no	no	0	0	1	1		By matching	By MS/MS	By MS/MS	3	0			5								1	1	3	12.397	12.277	3	0.014056	10571	160511_QHF_FH_JSI12i_3	51.346	39.132			1.3703	1.2927	94.349	5	0	Median	NaN	NaN	NaN	0	0	Median	1.6281	1.912	NaN	1	0	Median	1.3703	1.2927	NaN	1	0	Median	0.76616	0.77673	125.81	3	0	Median	3356100000	1672700000	1683400000	0	0	0	199020000	100370000	98648000	675650000	262600000	413050000	2481400000	1309700000	1171700000	19386	928;1231	18363	119240;119241;119242;119243;119244	161521;161522;161523	161522		504	3	
GKFSEGEATLR	1	Acetyl (K)	1235.6146	0.61461563	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	14	0							3				1	1	1	46.523	36.283	2	7.1741E-05	21578	160513_QHF_FH_JSI11Kac_4	98.943	63.432			0.32224	0.31949	146.39	3	1	Median	NaN	NaN	NaN	0	0	Median	1.098	1.2834	NaN	1	0	Median	0.32224	0.31949	NaN	1	0	Median	0.06058	0.06876	NaN	1	1	Median	12034000	8809700	3223800	0	0	0	1971000	1060200	910790	8781200	6507500	2273700	1281300	1242000	39256	19387	1609	18364	119245;119246;119247	161524;161525	161524	1634		2	
GKGDKAQIEK	3	Acetyl (K)	1114.5982	0.59823728	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	1	2	2	14.61	5.7968	3	0.0029178	5649	160513_QHF_FH_JSI9Kac_5	73.781	12.131			0.66158	0.72766	32.482	6	0	Median	0.90162	0.76694	NaN	1	0	Median	0.71968	0.86949	NaN	1	0	Median	0.4314	0.42701	19.023	2	0	Median	0.66158	0.72766	7.0351	2	0	Median	87918000	53081000	34837000	6650900	2828700	3822200	7278000	4693100	2584800	31662000	20318000	11344000	42327000	25241000	17086000	19388	980	18365	119248;119249;119250;119251;119252;119253	161526;161527;161528;161529;161530;161531;161532;161533;161534;161535	161527	752;756		10	
GKGEGDLSQLSK	2	Unmodified	1217.6252	0.62518031	5172	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	18.475	18.291	2;3	3.1709E-05	14760	160511_QHF_FH_JSI12i_3	94.402	81.786			0.95761	0.96687	21.213	4	0	Median	NaN	NaN	NaN	0	0	Median	0.66412	0.83842	NaN	1	0	Median	0.83327	0.75155	NaN	1	0	Median	1.1122	1.1358	2.6128	2	0	Median	315400000	153120000	162280000	0	0	0	40878000	25070000	15809000	34561000	20782000	13779000	239960000	107270000	132690000	19389	5172	18366	119254;119255;119256;119257	161536;161537;161538	161537			3	
GKGEITPAAIQK	2	Unmodified	1211.6874	0.68738664	2680	Q15532	SS18	Protein SSXT	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	22.177	21.68	2;3	0.00085393	18225	160511_QHF_FH_JSI11i_3	84.658	60.569			1.0063	1.1359	10.203	5	1	Median	NaN	NaN	NaN	0	0	Median	0.98946	1.1474	1.4243	2	1	Median	1.0348	0.96499	NaN	1	0	Median	1.0764	1.0991	14.556	2	0	Median	298830000	152090000	146740000	0	0	0	79123000	39888000	39235000	73557000	35409000	38147000	146150000	76790000	69360000	19390	2680	18367	119258;119259;119260;119261;119262;119263;119264	161539;161540;161541;161542;161543;161544;161545	161540			7	
GKGEQIAR	1	Unmodified	857.47191	0.47191456	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.5705	4.5705	3	0.0059259	2292	160511_QHF_FH_JSI11i_3	45.68	18.718			0.89967	0.8456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89967	0.8456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1112100000	624930000	487130000	0	0	0	0	0	0	1112100000	624930000	487130000	0	0	0	19391	1933	18368	119265	161546	161546			1	
GKGGEIQPVSVK	2	Acetyl (K)	1239.6823	0.68230126	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	43.329	34.312	2	0.0083056	18559	160513_QHF_FH_JSI10Kac_3	59.418	38.718			1.0324	1.0448	5.8597	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85934	1.0081	NaN	1	0	Median	1.0965	1.0448	NaN	1	0	Median	1.0324	1.1304	NaN	1	0	Median	11066000	5843500	5222500	0	0	0	4276000	2324000	1952000	1848500	864110	984370	4941500	2655400	2286100	19392	1959	18369	119266;119267;119268	161547;161548	161548	1974;1977		2	
GKGGKGLGK	3	2 Acetyl (K)	884.50797	0.50796571	2019	P62805	HIST1H4A	Histone H4	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	0.831					1	4	3	1		1	4	2	2	19.736	10.724	2	7.2643E-10	8164	160513_QHF_FH_JSI10Kac_4	144.09	40.526			1.7194	1.4141	55.927	9	0	Median	1.7194	1.4141	NaN	1	0	Median	2.9259	3.3773	6.4782	4	0	Median	1.2587	1.2447	3.8333	2	0	Median	0.94364	1.0144	7.5563	2	0	Median	1327400000	513770000	813600000	238240000	85586000	152660000	565620000	153340000	412280000	220290000	99195000	121100000	303210000	175650000	127560000	19393	2019	18370	119269;119270;119271;119272;119273;119274;119275;119276;119277	161549;161550;161551;161552;161553;161554;161555;161556	161549	2053;2054;2056		8	
GKGGKGLGKGGAK	4	3 Acetyl (K)	1239.6935	0.69353465	2019	P62805	HIST1H4A	Histone H4	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	1.45				10	11	23	18	8	8	12	24	21	21	31.923	22.757	2;3	4.4565E-60	1879	160513_QHF_FH_JSI9Kac_4	191.52	110.83			0.91964	0.98491	251.76	53	13	Median	1.1711	1.039	15.967	8	0	Median	1.0087	1.1039	231.66	18	6	Median	0.82277	0.80433	338.09	14	3	Median	0.77339	0.79858	266.78	13	4	Median	44128000000	21373000000	22755000000	17723000000	8059800000	9663400000	7911000000	3716400000	4194600000	6995700000	3533500000	3462200000	11498000000	6063100000	5434800000	19394	2019	18371	119278;119279;119280;119281;119282;119283;119284;119285;119286;119287;119288;119289;119290;119291;119292;119293;119294;119295;119296;119297;119298;119299;119300;119301;119302;119303;119304;119305;119306;119307;119308;119309;119310;119311;119312;119313;119314;119315;119316;119317;119318;119319;119320;119321;119322;119323;119324;119325;119326;119327;119328;119329;119330;119331;119332;119333;119334;119335;119336;119337;119338;119339;119340;119341;119342;119343;119344;119345;119346;119347;119348;119349;119350;119351;119352;119353;119354;119355	161557;161558;161559;161560;161561;161562;161563;161564;161565;161566;161567;161568;161569;161570;161571;161572;161573;161574;161575;161576;161577;161578;161579;161580;161581;161582;161583;161584;161585;161586;161587;161588;161589;161590;161591;161592;161593;161594;161595;161596;161597;161598;161599;161600;161601;161602;161603;161604;161605;161606;161607;161608;161609;161610;161611;161612;161613;161614;161615;161616;161617;161618;161619;161620;161621;161622;161623;161624;161625;161626;161627;161628;161629;161630;161631;161632;161633;161634;161635;161636;161637;161638;161639;161640;161641;161642;161643;161644;161645;161646;161647;161648;161649;161650;161651;161652;161653;161654;161655;161656;161657;161658;161659;161660;161661;161662;161663;161664;161665;161666;161667;161668;161669;161670;161671;161672;161673;161674;161675;161676;161677;161678;161679;161680;161681;161682;161683;161684;161685;161686;161687;161688;161689;161690;161691;161692	161582	2053;2054;2055;2056		135	
GKGGKGLGKGGAKR	4	4 Acetyl (K)	1437.8052	0.80521036	2019	P62805	HIST1H4A	Histone H4	yes	yes	4	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	1.39				1	4	8	9	8	9	9	10	11	9	33.381	23.707	2;3	1.062E-113	14135	160513_QHF_FH_JSI10Kac_5	242.82	187.25			1.4663	1.2816	269.9	34	6	Median	1.5236	1.3469	125.22	8	1	Median	1.5229	1.7225	254.32	9	1	Median	0.94324	0.91749	295.92	9	2	Median	0.82742	0.88115	379.46	8	2	Median	16249000000	5285400000	10963000000	7423800000	2954000000	4469700000	4465600000	637900000	3827700000	2170400000	1333500000	836920000	2188700000	359920000	1828800000	19395	2019	18372	119356;119357;119358;119359;119360;119361;119362;119363;119364;119365;119366;119367;119368;119369;119370;119371;119372;119373;119374;119375;119376;119377;119378;119379;119380;119381;119382;119383;119384;119385;119386;119387;119388;119389;119390;119391;119392;119393;119394	161693;161694;161695;161696;161697;161698;161699;161700;161701;161702;161703;161704;161705;161706;161707;161708;161709;161710;161711;161712;161713;161714;161715;161716;161717;161718;161719;161720;161721;161722;161723;161724;161725;161726;161727;161728;161729;161730;161731;161732;161733;161734;161735;161736;161737;161738;161739;161740;161741;161742;161743;161744;161745;161746;161747;161748;161749;161750;161751;161752;161753	161743	2053;2054;2055;2056		61	
GKGGKGLGKGGAKR	4	3 Acetyl (K)	1395.7946	0.79464568	2019	P62805	HIST1H4A	Histone H4	yes	yes	3	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.699							2	6	7	3	5	2	5	23.819	15.459	2;3	2.1406E-16	8856	160513_QHF_FH_JSI12Kac_6	128.21	99.887			0.94818	1.0019	44.367	15	0	Median	2.1053	1.8061	3.041	3	0	Median	0.48059	0.57643	10.174	5	0	Median	0.77172	0.75028	8.8315	2	0	Median	0.96219	1.1188	6.8262	5	0	Linear	608400000	318160000	290250000	131000000	42258000	88747000	254170000	166200000	87964000	67373000	37661000	29712000	155860000	72036000	83822000	19396	2019	18372	119395;119396;119397;119398;119399;119400;119401;119402;119403;119404;119405;119406;119407;119408;119409	161754;161755;161756;161757;161758;161759;161760;161761;161762;161763;161764;161765;161766;161767;161768	161765	2053;2054;2055;2056		15	
GKGSAVPSDGQAR	1	Acetyl (K)	1270.6266	0.6265773	4506	Q9BWW4	SSBP3	Single-stranded DNA-binding protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					1	1	2	19.085	11.876	2	6.0508E-12	8291	160513_QHF_FH_JSI11Kac_3	124.1	92.731			0.91762	0.94493	6.717	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75023	0.88933	NaN	1	0	Median	0.94969	0.91868	NaN	1	0	Median	0.92542	1.0036	4.5357	2	0	Median	36600000	19474000	17126000	0	0	0	12643000	7099500	5543400	10058000	4975000	5083100	13899000	7399100	6499800	19397	4506	18373	119410;119411;119412;119413	161769;161770;161771;161772;161773;161774;161775	161770	3173		7	
GKHASAVASK	2	Acetyl (K)	996.53524	0.53524309	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	5.9187	-1.995	2	0.00058262	1946	160513_QHF_FH_JSI10Kac_6	90.05	40.01			0.66852	0.65923	135.78	5	1	Median	13.551	11.82	NaN	1	1	Median	0.74121	0.84675	NaN	1	0	Median	0.66852	0.65923	NaN	1	0	Median	0.4502	0.48763	28.661	2	0	Median	16909000	9351700	7557200	2056000	116270	1939800	4942400	2691000	2251400	3823400	2507200	1316200	6087100	4037300	2049800	19398	3264	18374	119414;119415;119416;119417;119418	161776;161777;161778;161779;161780;161781;161782	161782	2816		7	
GKHGFSDNQK	2	Acetyl (K)	1158.5418	0.54178503	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.481								4	7	2	4	2	3	9.9815	2.058	3	7.8154E-07	3680	160513_QHF_FH_JSI11Kac_6	119.34	97.766			1.1315	1.0895	309.47	10	8	Median	1.279	1.0807	464.64	2	2	Median	35.83	39.527	389.52	3	3	Median	1.1315	1.0895	14.285	2	0	Median	0.10244	0.10443	366.53	3	3	Median	162630000	103020000	59616000	24578000	16997000	7580600	34499000	26578000	7921300	64829000	29291000	35538000	38727000	30151000	8576300	19399	3793	18375	119419;119420;119421;119422;119423;119424;119425;119426;119427;119428;119429	161783;161784;161785;161786;161787;161788;161789;161790;161791;161792;161793	161783	2939		11	
GKIEEAVNAFK	2	Unmodified	1204.6452	0.64518747	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.945	40.735	2	0.0015703	34815	160511_QHF_FH_JSI12i_3	99.752	75.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31964000	0	31964000	0	0	0	0	0	0	0	0	0	31964000	0	31964000	19400	2307	18376	119430	161794	161794			1	
GKIEEDSEVLMMIK	2	Unmodified	1620.8103	0.81028025	458	O60888	CUTA	Protein CutA	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	2	5	69.552	68.821	2;3	7.6387E-09	60694	160511_QHF_FH_JSI9i_2	139.89	97.884			0.89261	0.93336	37.236	11	5	Median	0.83126	0.71094	50.255	2	0	Median	0.49063	0.60096	38.272	2	1	Median	0.77883	0.79671	22.387	2	0	Median	1.1293	1.263	23.065	5	4	Median	756330000	382830000	373500000	68695000	30128000	38567000	121970000	82352000	39614000	131570000	70775000	60793000	434100000	199580000	234530000	19401	458	18377	119431;119432;119433;119434;119435;119436;119437;119438;119439;119440;119441	161795;161796;161797;161798;161799;161800;161801;161802;161803;161804;161805;161806;161807;161808;161809;161810;161811;161812	161801			18	
GKIELEETIK	2	Unmodified	1158.6496	0.64960415	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	35.442	35.378	2;3	1.451E-06	30859	160511_QHF_FH_JSI11i_3	129.16	71.558			0.96097	0.94631	7.644	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0451	0.97538	7.0458	2	0	Median	0.90189	0.90794	8.6208	2	0	Median	1001500000	495910000	505560000	0	0	0	0	0	0	281880000	153300000	128570000	719590000	342600000	376990000	19402	1883	18378	119442;119443;119444;119445	161813;161814;161815;161816;161817;161818;161819	161814			7	
GKISEADK	2	Unmodified	846.4447	0.44469675	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.2		7	4					3		3	3	3	5	5.0654	2.8108	2;3	0.0015196	2507	160511_QHF_FH_JSI10i_3	74.92	42.6			0.84932	0.85325	16.016	14	0	Median	0.93645	0.80411	20.248	3	0	Median	0.8748	0.98311	9.2302	3	0	Median	0.73825	0.69708	8.1552	3	0	Plateau	0.77367	0.85729	11.869	5	0	Median	7556200000	4099800000	3456400000	930190000	360730000	569460000	1505100000	721560000	783550000	1594400000	856450000	737950000	3526500000	2161000000	1365500000	19403	954	18379	119446;119447;119448;119449;119450;119451;119452;119453;119454;119455;119456;119457;119458;119459	161820;161821;161822;161823;161824;161825;161826;161827;161828;161829	161821			10	
GKISEADKK	3	Unmodified	974.53966	0.53965977	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		4.6333	4.3079	3	0.0004184	2170	160511_QHF_FH_JSI9i_3	88.596	45.288			0.24205	0.25281	168.46	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72305	0.83202	NaN	1	0	Median	0.081029	0.076816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	930510000	682170000	248340000	148960000	148960000	0	552000000	314290000	237710000	229550000	218920000	10630000	0	0	0	19404	954	18380	119460;119461;119462	161830;161831;161832	161832			3	
GKKPDIDITGPK	3	Unmodified	1267.7136	0.71360139	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	2	By MS/MS			By MS/MS	3	0			2							1			1	23.387	22.722	3	1.0023E-05	18559	160511_QHF_FH_JSI12i_3	95.631	59.894			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19405	2286	18381	119463;119464	161833;161834	161834			2	
GKLDDYQER	1	Unmodified	1122.5306	0.53055165	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.4		6	6					2		2	4	4	4	11.734	10.104	2;3	1.07E-05	8013	160511_QHF_FH_JSI12i_3	131.52	78.023			0.98818	1.0203	8.3379	14	0	Median	1.1627	0.99082	4.2551	2	0	Median	0.8164	0.99531	6.1503	4	0	Median	1.088	1.0757	10.218	4	0	Median	0.98737	1.0658	10.027	4	0	Median	2648500000	1307700000	1340800000	295300000	140640000	154660000	560350000	323330000	237020000	1213700000	544790000	668920000	579130000	298950000	280180000	19406	2536	18382	119465;119466;119467;119468;119469;119470;119471;119472;119473;119474;119475;119476;119477;119478	161835;161836;161837;161838;161839;161840;161841;161842;161843;161844;161845;161846;161847;161848;161849;161850;161851;161852	161852			18	
GKLDDYQER	1	Acetyl (K)	1164.5411	0.54111633	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		32.684	24.055	2	0.00049944	13771	160513_QHF_FH_JSI10Kac_3	99.568	59.946			0.67364	0.72304	35.032	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77847	0.92628	NaN	1	0	Median	0.58293	0.56439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26066000	14563000	11503000	0	0	0	15419000	8370300	7048800	10647000	6193200	4453800	0	0	0	19407	2536	18382	119479;119480	161853;161854;161855	161855	2528		3	
GKLDGNQDLIR	1	Unmodified	1227.6571	0.65714914	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	24.965	24.965	2;3	0.016023	21727	160511_QHF_FH_JSI9i_2	65.347	42.607			0.46038	0.42827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46038	0.42827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67814000	37227000	30587000	0	0	0	0	0	0	67814000	37227000	30587000	0	0	0	19408	1635	18383	119481;119482;119483	161856;161857;161858	161857			3	
GKLDVQFSGLTK	2	Unmodified	1291.7136	0.71360139	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.74		2	7						3	3	3	3	3	54.553	51.565	2;3	8.9281E-05	44253	160511_QHF_FH_JSI12i_3	133.32	107.76			0.95176	0.95816	20.346	12	0	Median	1.1128	0.91276	19.822	3	0	Median	0.94521	1.0719	32.656	3	0	Plateau	0.95836	0.90165	4.9146	3	0	Plateau	1.1462	1.1509	3.009	3	0	Plateau	2278200000	1086400000	1191800000	161610000	75961000	85650000	579880000	290510000	289360000	478960000	245400000	233560000	1057700000	474530000	583200000	19409	1192	18384	119484;119485;119486;119487;119488;119489;119490;119491;119492;119493;119494;119495	161859;161860;161861;161862;161863;161864;161865;161866;161867;161868;161869;161870;161871;161872;161873;161874;161875;161876;161877;161878;161879;161880;161881	161877			23	
GKLEEQRPER	1	Unmodified	1240.6524	0.65239812	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			6.4074	5.8978	3	8.6427E-05	3850	160511_QHF_FH_JSI9i_3	89.301	66.383			0.65112	0.63321	22.333	2	1	Median	0.91784	0.74153	NaN	1	0	Median	0.46191	0.54071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	975270000	498950000	476320000	701070000	314230000	386850000	274200000	184730000	89471000	0	0	0	0	0	0	19410	1036	18385	119496;119497	161882;161883;161884	161883			3	
GKLELVDNK	2	Unmodified	1014.571	0.5709599	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	20.959	20.96	2;3	0.0014115	17513	160511_QHF_FH_JSI10i_3	93.111	59.314			0.65837	0.67233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65837	0.67233	NaN	1	1	Median	137520000	75460000	62060000	0	0	0	0	0	0	0	0	0	137520000	75460000	62060000	19411	2432	18386	119498;119499	161885;161886	161885			2	
GKLHVLLFK	2	Acetyl (K)	1095.6805	0.68045077	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.782	63.399	3	0.010902	34396	160513_QHF_FH_JSI11Kac_6	51.268	32.595			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6487100	6487100	0	0	0	0	0	0	0	6487100	6487100	0	0	0	0	19412	3937	18387	119500	161887	161887	3007		1	
GKLPESPK	2	Unmodified	854.48617	0.48616764	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	10.357	10.268	2;3	0.0025517	7853	160511_QHF_FH_JSI11i_3	63.816	47.04			0.9194	0.95182	11.582	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83943	1.0213	NaN	1	0	Median	1.1097	1.0434	14.39	2	0	Median	0.88454	0.89591	8.5614	2	0	Median	1035600000	544110000	491480000	0	0	0	81728000	42735000	38993000	267050000	142090000	124960000	686820000	359290000	327530000	19413	1117	18388	119501;119502;119503;119504;119505	161888;161889;161890	161889			3	
GKLPIVNEDDELVAIIAR	1	Unmodified	1964.0942	0.094241321	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	1	2	93.734	93.36	3	1.7266E-16	83177	160511_QHF_FH_JSI11i_3	158.64	153.43			0.89008	0.95375	5.8756	7	1	Median	1.1355	0.94755	2.2564	2	0	Median	0.86744	1.0195	2.0989	2	0	Median	1.0018	0.95375	NaN	1	0	Median	0.85168	0.88591	0.14471	2	1	Median	478620000	251340000	227280000	81542000	39248000	42294000	134560000	70280000	64284000	188510000	99730000	88779000	74003000	42079000	31923000	19414	1015	18389	119506;119507;119508;119509;119510;119511;119512	161891;161892;161893;161894;161895;161896;161897;161898;161899;161900;161901;161902;161903;161904;161905;161906;161907;161908;161909;161910	161894			20	
GKLPSYK	2	Acetyl (K)	833.4647	0.46470391	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	35.699	26.262	2	0.058983	15824	160513_QHF_FH_JSI12Kac_4	57.281	7.9225			0.95653	1.034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95653	1.034	NaN	1	0	Median	6440100	3421600	3018500	0	0	0	0	0	0	0	0	0	6440100	3421600	3018500	19415	2338	18390	119513	161911	161911			1	
GKLSEHLR	1	Acetyl (K)	980.54033	0.54032847	2622	Q15059	BRD3	Bromodomain-containing protein 3	yes	yes	1	0	0	1	By MS/MS				16	0									1	1				25.149	16.849	3	0.011294	9896	160513_QHF_FH_JSI9Kac_6	50.034	30.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19416	2622	18391	119514	161912	161912	2585		1	
GKLSEQLK	2	Acetyl (K)	943.53385	0.53384611	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				2	1	1	34.908	25.52	2	0.0024405	15921	160513_QHF_FH_JSI11Kac_4	97.431	32.178			0.40525	0.43994	125.42	2	1	Median	NaN	NaN	NaN	0	0	Median	0.15136	0.18124	NaN	1	1	Median	1.085	1.0679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64812000	46793000	18019000	0	0	0	48075000	41032000	7043900	16737000	5761800	10975000	0	0	0	19417	1259	18392	119515;119516;119517;119518	161913;161914;161915;161916	161915	1153		4	
GKMDMEEIIQR	1	Unmodified	1348.6479	0.64790636	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								2	2		47.129	46.346	2;3	0.00049247	38762	160511_QHF_FH_JSI10i_3	91.855	80.703			0.94247	0.95339	12.526	4	2	Median	NaN	NaN	NaN	0	0	Median	0.77436	0.88628	20.106	2	1	Median	1.0257	0.95339	3.6267	2	1	Median	NaN	NaN	NaN	0	0	Median	273720000	131940000	141790000	0	0	0	107420000	62533000	44889000	166300000	69403000	96899000	0	0	0	19418	4619	18393	119519;119520;119521;119522	161917;161918;161919;161920;161921	161920			5	
GKNNTVGLIQLNR	1	Acetyl (K)	1467.8158	0.81577505	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	36.229	26.782	2	0.004163	16527	160513_QHF_FH_JSI11Kac_4	65.347	27.261			1.1246	1.2223	30.239	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2874	1.5137	NaN	1	0	Median	0.98243	0.987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10739000	4501400	6237400	0	0	0	5716000	2325800	3390200	5022700	2175500	2847100	0	0	0	19419	1341	18394	119523;119524;119525	161922;161923;161924;161925;161926	161924	1268		5	
GKNSDEEAPK	2	Acetyl (K)	1115.5095	0.50948185	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	1	2	8.8133	1.6019	2	1.0901E-06	3043	160513_QHF_FH_JSI12Kac_2	129.89	94.594			0.94789	0.995	5.1738	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77732	0.93072	NaN	1	0	Median	1.1142	1.0305	NaN	1	0	Median	0.94789	0.995	NaN	1	0	Median	23013000	11749000	11263000	0	0	0	8668300	4568200	4100100	4035300	1926600	2108800	10309000	5254400	5054600	19420	5440	18395	119526;119527;119528;119529	161927;161928;161929;161930;161931;161932	161932	3419;3420		6	
GKNSDEEAPKTAQK	3	2 Acetyl (K)	1585.7584	0.75837933	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	2	0	0	2		By MS/MS			12	0					1						1			20.918	13.654	3	0.0035108	7202	160513_QHF_FH_JSI10Kac_2	48.177	42.898			0.56482	0.65715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56482	0.65715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3520900	2125800	1395000	0	0	0	3520900	2125800	1395000	0	0	0	0	0	0	19421	5440	18396	119530	161933	161933	3419;3420;3421		1	
GKPAAPGGAGNTGTK	2	Unmodified	1282.663	0.6629628	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	2	2	2	6.59	6.3237	2;3	3.3929E-05	4126	160511_QHF_FH_JSI11i_3	112.96	106.27			0.9396	0.87124	24.025	9	2	Median	1.2181	0.98413	18.281	3	0	Median	0.79001	0.88896	2.8478	2	0	Median	0.94569	0.87304	5.0521	2	1	Median	0.57658	0.58577	16.988	2	1	Median	753900000	393990000	359910000	210770000	105280000	105490000	128750000	70519000	58232000	213940000	89180000	124760000	200440000	129010000	71428000	19422	2485	18397	119531;119532;119533;119534;119535;119536;119537;119538;119539	161934;161935;161936;161937;161938;161939;161940;161941;161942;161943;161944;161945	161934			12	
GKPAENDVK	2	Acetyl (K)	998.50327	0.50327426	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	1	0	0	1		By MS/MS	By matching		12.7	0.471					1	2					2	1		17.084	9.7265	2	0.013926	5778	160513_QHF_FH_JSI10Kac_2	58.981	17.952			0.77099	0.82835	20.405	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85883	0.9922	1.1067	2	0	Median	0.71492	0.69699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7771500	4379000	3392400	0	0	0	4859100	2531100	2328000	2912300	1847900	1064500	0	0	0	19423	3791	18398	119540;119541;119542	161946;161947;161948	161947	2935		3	
GKPAENDVK	2	Unmodified	956.49271	0.49270958	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		2	2								1		3	5.0464	4.9176	2;3	0.00083106	2594	160511_QHF_FH_JSI12i_3	73.841	51.755			0.71647	0.7366	31.663	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71647	0.7366	31.663	3	1	Plateau	819520000	488830000	330690000	0	0	0	0	0	0	0	0	0	819520000	488830000	330690000	19424	3791	18398	119543;119544;119545;119546	161949;161950;161951	161951			3	
GKPALSR	1	Acetyl (K)	769.44464	0.44463717	5396	Q9ULD4	BRPF3	Bromodomain and PHD finger-containing protein 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	0.786						2	3	4		1	2	3	3	23.573	15.042	2	0.001608	10514	160513_QHF_FH_JSI11Kac_4	111.01	58.324			0.82749	0.89706	5.9313	9	0	Median	1.1815	1.0089	NaN	1	0	Median	0.78276	0.93105	5.2602	2	0	Median	0.84782	0.84008	3.8877	3	0	Plateau	0.80383	0.89666	2.8934	3	0	Plateau	435900000	230680000	205220000	21857000	8658800	13198000	159470000	85668000	73807000	119640000	62581000	57058000	134930000	73770000	61161000	19425	5396	18399	119547;119548;119549;119550;119551;119552;119553;119554;119555	161952;161953;161954;161955;161956	161954	3390		5	
GKPALVR	1	Acetyl (K)	781.48102	0.48102268	717	O95696	BRD1	Bromodomain-containing protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.98						1	3	3	3	3	2	3	2	32.076	21.966	2	0.0016792	14917	160513_QHF_FH_JSI12Kac_4	110.61	43.618			0.89572	0.94166	10.438	9	0	Median	0.9256	0.79216	2.8673	2	0	Median	0.69345	0.8245	1.5682	2	0	Median	1.013	0.99853	4.0389	3	0	Median	0.88098	0.94713	0.81881	2	0	Median	853320000	430650000	422660000	144930000	50992000	93935000	231180000	138290000	92881000	265540000	131060000	134480000	211670000	110310000	101360000	19426	717	18400	119556;119557;119558;119559;119560;119561;119562;119563;119564;119565	161957;161958;161959;161960;161961;161962;161963;161964;161965;161966;161967;161968;161969	161965	352		13	
GKPANQLLALR	1	Unmodified	1179.7088	0.70879078	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			38.247	36.773	3	0.0042137	30724	160511_QHF_FH_JSI10i_3	47.894	36.988			1.124	1.111	13.426	2	0	Median	1.4602	1.2217	NaN	1	0	Median	0.86514	1.0104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37667000	17863000	19804000	12498000	5671100	6827100	25168000	12192000	12977000	0	0	0	0	0	0	19427	5495	18401	119566;119567	161970	161970			1	
GKPAVAALGDLTDLPTYEHIQTALSSK	2	Unmodified	2795.4705	0.47052416	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	94.097	93.546	3;4	1.3019E-45	82990	160511_QHF_FH_JSI11i_3	191.18	184.75			0.94068	0.84708	27.005	9	3	Median	1.008	0.80782	31.254	3	1	Plateau	0.59837	0.69527	10.911	2	0	Median	0.92075	0.86344	2.7058	2	1	Median	0.75294	0.7635	44.552	2	1	Median	754900000	446050000	308860000	139970000	66283000	73683000	242280000	149080000	93197000	205780000	134500000	71273000	166880000	96179000	70705000	19428	2299	18402	119568;119569;119570;119571;119572;119573;119574;119575;119576	161971;161972;161973;161974;161975;161976;161977;161978;161979;161980;161981;161982;161983;161984;161985;161986;161987;161988;161989;161990	161975			20	
GKPDAAK	2	Acetyl (K)	727.38645	0.38645359	928	P09429	HMGB1	High mobility group protein B1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	0.98					1	3		1		1	1	2	1	8.2413	0.49059	2	0.00057973	3104	160513_QHF_FH_JSI10Kac_3	116.73	18.927			0.8294	0.8347	15.876	5	0	Median	1.0055	0.8347	NaN	1	0	Median	0.8294	0.95302	NaN	1	0	Median	0.85309	0.83198	3.2863	2	0	Median	0.57949	0.62048	NaN	1	0	Median	533660000	298970000	234690000	2691000	1209100	1481900	189280000	111440000	77842000	180270000	91711000	88557000	161420000	94611000	66808000	19429	928	18403	119577;119578;119579;119580;119581	161991;161992;161993;161994;161995;161996;161997;161998	161998	681		8	
GKPDLNTTLPIR	1	Unmodified	1323.751	0.75104953	5228	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	yes	yes	0	0	0	1	By matching	By matching		By MS/MS	3	0			3							1	1		1	47.706	46.566	3	0.0099251	39781	160511_QHF_FH_JSI12i_3	32.295	27.651			0.93691	1.0813	6.1767	3	0	Plateau	1.3326	1.0813	NaN	1	0	Median	0.93691	1.0859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97739	0.9737	NaN	1	0	Median	175500000	91036000	84464000	44692000	23285000	21407000	69711000	37617000	32093000	0	0	0	61097000	30134000	30963000	19430	5228	18404	119582;119583;119584	161999	161999			1	
GKPDTFLSTIEAIYYFLVDYHTDILK	2	Unmodified	3061.5688	0.56884122	3542	Q8N5C7	DTWD1	DTW domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.97	96.245	4	5.5279E-28	56867	160513_QHF_FH_JSI10Kac_6	142.94	124.84			0.58673	0.69956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58673	0.69956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138520000	80312000	58207000	0	0	0	138520000	80312000	58207000	0	0	0	0	0	0	19431	3542	18405	119585	162000	162000			1	
GKPEIVGSNLDTLVSIGLDEK	2	Unmodified	2183.1685	0.16852848	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	92.259	91.959	3	2.2606E-22	79493	160511_QHF_FH_JSI12i_3	151.45	136.84			0.78071	0.83111	25.507	6	4	Median	0.54789	0.45476	NaN	1	1	Median	0.66652	0.79368	11.953	2	1	Median	0.89455	0.83466	NaN	1	0	Median	0.85558	0.86296	5.9205	2	2	Median	425540000	219510000	206030000	25482000	13621000	11861000	39458000	26063000	13395000	96853000	44277000	52576000	263750000	135550000	128200000	19432	2605	18406	119586;119587;119588;119589;119590;119591	162001;162002;162003;162004;162005;162006;162007;162008;162009	162009			9	
GKPELRK	2	Unmodified	826.50249	0.5024864	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		5.4482	5.1164	3	0.025005	3014	160511_QHF_FH_JSI10i_3	60.682	28.746			0.41576	0.40431	40.81	3	0	Plateau	1.1139	0.8765	NaN	1	0	Median	0.57542	0.66936	NaN	1	0	Median	0.41576	0.39306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4052300000	2206800000	1845500000	1146000000	522150000	623860000	1325600000	823850000	501730000	1580700000	860840000	719890000	0	0	0	19433	2022	18407	119592;119593;119594	162010;162011	162010			2	
GKPESEGEAK	2	Unmodified	1030.4931	0.49310351	4045	Q96EI5	TCEAL4	Transcription elongation factor A protein-like 4	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	4.542	3.9708	2	0.0017959	1936	160511_QHF_FH_JSI12i_2	79.974	55.051			0.7563	0.85162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7563	0.85162	NaN	1	0	Median	93194000	51451000	41743000	0	0	0	0	0	0	0	0	0	93194000	51451000	41743000	19434	4045	18408	119595	162012;162013	162012			2	
GKPIFEVNK	2	Unmodified	1030.5811	0.58113065	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	26.964	26.289	2;3	0.00021708	21999	160511_QHF_FH_JSI10i_3	101.65	64.626			1.1128	1.1399	30.597	6	2	Median	1.6891	1.3451	NaN	1	1	Median	0.62831	0.71505	14.198	2	0	Median	1.4505	1.3733	NaN	1	1	Median	1.1128	1.1399	8.4336	2	0	Median	480640000	240010000	240630000	94376000	39002000	55374000	143370000	82253000	61118000	83994000	40523000	43472000	158900000	78228000	80670000	19435	3102	18409	119596;119597;119598;119599;119600;119601	162014;162015;162016;162017;162018;162019	162015			6	
GKPLALVEEIR	1	Unmodified	1223.7238	0.72377215	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		53.22	52.173	2	0.00011819	43735	160511_QHF_FH_JSI10i_3	104.52	67.047			1.0209	0.96153	6.7415	3	0	Plateau	1.0395	0.84446	NaN	1	0	Median	0.76711	0.92993	NaN	1	0	Median	1.0209	0.96153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	347610000	177640000	169970000	65644000	34035000	31609000	83460000	48724000	34736000	198500000	94878000	103620000	0	0	0	19436	4394	18410	119602;119603;119604	162020;162021;162022;162023;162024	162022			5	
GKPLMLNPR	1	Acetyl (K)	1066.5957	0.59573486	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	1	0	0	1		By MS/MS			15	0								1			1			55.899	45.321	2	0.033517	23124	160513_QHF_FH_JSI10Kac_5	57.281	47.693			0.20028	0.23334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20028	0.23334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2271000	1923800	347200	0	0	0	2271000	1923800	347200	0	0	0	0	0	0	19437	1225	18411	119605	162025	162025			1	
GKPLMLVGNAGVGK	2	Acetyl (K)	1381.7752	0.77515579	4031	Q96DT5	DNAH11	Dynein heavy chain 11, axonemal	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	23.715	16.118	3	0.052927	10128	160513_QHF_FH_JSI12Kac_4	33.685	11.63			1.3377	1.4767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3377	1.4767	NaN	1	1	Median	12648000	6081600	6566600	0	0	0	0	0	0	0	0	0	12648000	6081600	6566600	19438	4031	18412	119606	162026	162026			1	
GKPLPEYHVR	1	Unmodified	1194.6509	0.65094155	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							4	3	3	2	18.532	17.904	2;3;4	1.1071E-05	14596	160511_QHF_FH_JSI9i_3	97.456	87.452			0.95151	0.96106	22.588	11	1	Median	1.5989	1.2717	21.743	3	1	Median	0.71683	0.80655	12.589	3	0	Plateau	1.0041	0.96106	5.2081	3	0	Median	0.78058	0.80864	18.858	2	0	Median	3121500000	1626900000	1494700000	1087400000	478820000	608540000	949030000	563980000	385050000	948990000	497480000	451510000	136140000	86570000	49566000	19439	2094	18413	119607;119608;119609;119610;119611;119612;119613;119614;119615;119616;119617;119618	162027;162028;162029;162030;162031;162032;162033;162034;162035;162036;162037;162038;162039;162040;162041;162042;162043	162038			17	
GKPLVVVINEK	2	Unmodified	1194.7336	0.73360855	4885	Q9NP73	ALG13	Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	39.214	38.159	2;3	0.004994	33269	160511_QHF_FH_JSI11i_3	76.332	64.969			0.86157	0.72936	20.341	3	3	Plateau	0.86157	0.71417	NaN	1	1	Median	0.715	0.82953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0348	1.068	NaN	1	1	Median	186920000	94211000	92704000	75005000	35739000	39266000	65264000	32803000	32461000	0	0	0	46647000	25670000	20977000	19440	4885	18414	119619;119620;119621;119622;119623	162044;162045;162046;162047;162048	162045			5	
GKPMELIIGK	2	Unmodified	1084.6315	0.63145166	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	44.824	44.073	2;3	2.5334E-06	37495	160511_QHF_FH_JSI12i_3	127.76	127.76			1.003	0.98434	18.518	7	0	Median	0.99004	0.80581	30.725	2	0	Median	1.003	1.1242	NaN	1	0	Median	1.1188	1.0455	9.9067	2	0	Median	0.95973	0.97726	1.0205	2	0	Median	883660000	431360000	452300000	167870000	70702000	97168000	104970000	54500000	50473000	233380000	120850000	112530000	377430000	185310000	192120000	19441	102	18415	119624;119625;119626;119627;119628;119629;119630	162049;162050;162051;162052;162053;162054;162055;162056;162057	162056			9	
GKPMELIIGKK	3	Unmodified	1212.7264	0.72641468	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			36.025	34.576	3	0.0087334	28892	160511_QHF_FH_JSI10i_3	55.452	51.807			0.90039	0.85896	1.7767	2	2	Median	1.0925	0.86982	NaN	1	1	Median	0.74209	0.84824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100150000	48070000	52079000	52443000	20960000	31482000	47706000	27109000	20597000	0	0	0	0	0	0	19442	102	18416	119631;119632	162058;162059	162058			2	
GKPNIGQEQPVDDAAEVPQREPEK	2	Unmodified	2630.2936	0.29362242	2413	Q13438	OS9	Protein OS-9	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				37.503	36.03	4	1.1005E-05	29395	160511_QHF_FH_JSI9i_3	60.747	53.214			0.64008	0.53546	NaN	1	1	Median	0.64008	0.53546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15907000	9852500	6054300	15907000	9852500	6054300	0	0	0	0	0	0	0	0	0	19443	2413	18417	119633	162060	162060			1	
GKPSFSR	1	Acetyl (K)	819.4239	0.42390173	1851	P55201	BRPF1	Peregrin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.661							1	4	3	2	3	1	2	28.711	19.747	2	0.011173	11373	160513_QHF_FH_JSI12Kac_5	89.369	34.583			0.8389	0.88679	10.52	8	0	Median	1.0732	0.9173	3.8037	2	0	Median	0.85802	1.0278	9.5244	3	0	Plateau	0.87359	0.86233	NaN	1	0	Median	0.72657	0.7894	7.5275	2	0	Median	225260000	120230000	105030000	42241000	18657000	23585000	92296000	51213000	41084000	53372000	28784000	24587000	37353000	21575000	15778000	19444	1851	18418	119634;119635;119636;119637;119638;119639;119640;119641	162061;162062;162063;162064;162065;162066;162067	162066	1862		7	
GKPSSDTVPK	2	Unmodified	1014.5346	0.53457439	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	6.9013	6.9502	2	0.00066593	4468	160511_QHF_FH_JSI12i_3	105.4	73.462			1.5461	1.5752	1.9973	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7581	1.5976	NaN	1	1	Median	1.3596	1.5531	NaN	1	1	Median	106270000	52446000	53822000	0	0	0	0	0	0	33011000	11953000	21058000	73258000	40493000	32765000	19445	2197	18419	119642;119643	162068;162069	162069			2	
GKPSSDTVPK	2	Acetyl (K)	1056.5451	0.54513908	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4				1	2	2	2	23.659	14.85	2	1.2098E-05	5457	160513_QHF_FH_JSI9Kac_3	109.42	74.124			0.81407	0.86736	17.063	7	0	Median	1.0706	0.84282	NaN	1	0	Median	0.68288	0.81672	14.539	2	0	Median	1.1686	1.1427	3.6899	2	0	Median	0.77093	0.83248	5.8043	2	0	Median	161570000	85539000	76029000	29269000	13114000	16155000	53015000	30701000	22315000	37860000	16911000	20949000	41424000	24813000	16611000	19446	2197	18419	119644;119645;119646;119647;119648;119649;119650	162070;162071;162072;162073;162074;162075;162076;162077;162078;162079;162080;162081;162082	162074	2321		13	
GKPTEASIEAR	1	Unmodified	1157.6041	0.60405094	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		11.315	11.315	2	0.012226	8901	160511_QHF_FH_JSI11i_3	82.489	45.932			0.30615	0.28894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30615	0.28894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	162820000	127590000	35229000	0	0	0	0	0	0	162820000	127590000	35229000	0	0	0	19447	5051	18420	119651	162083	162083			1	
GKPVGLVGVTELSDAQK	2	Unmodified	1696.9359	0.93594977	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.963	53.411	3	0.0029685	44562	160511_QHF_FH_JSI10i_3	44.998	40.197			0.88402	1.0341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88402	1.0341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27386000	15062000	12324000	0	0	0	27386000	15062000	12324000	0	0	0	0	0	0	19448	3435	18421	119652	162084	162084			1	
GKPVGLVGVTELSDAQKK	3	Unmodified	1825.0309	0.030912783	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			48.133	46.567	3	0.014358	38907	160511_QHF_FH_JSI10i_3	47.082	41.653			0.67602	0.78619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67602	0.78619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10429000	5601400	4827700	0	0	0	10429000	5601400	4827700	0	0	0	0	0	0	19449	3435	18422	119653	162085	162085			1	
GKPVPTQGSR	1	Unmodified	1025.5618	0.56179219	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			3							2	1			5.5338	5.0348	2;3	0.017391	3023	160511_QHF_FH_JSI9i_3	59.245	48.372			1.0459	0.92218	5.3756	3	0	Median	1.0828	0.89163	4.7642	2	0	Median	0.79076	0.95873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	273760000	145410000	128360000	187570000	90182000	97383000	86198000	55224000	30974000	0	0	0	0	0	0	19450	933	18423	119654;119655;119656	162086;162087;162088	162086			3	
GKPYDGITTIK	2	Acetyl (K)	1233.6605	0.66050319	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	1.02					2	3	3	2		1	3	2	4	59.321	49.256	2	6.5066E-05	26355	160513_QHF_FH_JSI12Kac_3	99.522	57.413			0.95982	1.0787	18.593	10	0	Median	0.85544	0.71639	NaN	1	0	Median	0.83609	1.009	6.9776	3	0	Plateau	1.1329	1.124	2.4434	2	0	Median	1.0786	1.1721	20.189	4	0	Median	397810000	207630000	190180000	4104600	2155800	1948700	135500000	73842000	61656000	128400000	65708000	62688000	129810000	65924000	63889000	19451	513	18424	119657;119658;119659;119660;119661;119662;119663;119664;119665;119666	162089;162090;162091;162092;162093;162094;162095;162096;162097;162098;162099;162100	162094	263		12	
GKQGGKAR	2	2 Acetyl (K)	884.48281	0.48281359	819;2765	Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A type 2-C;Histone H2A type 2-A	no	no	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13.2	0.687					1	3	2				2	2	2	5.6298	-1.7327	2	0.0010026	1931	160513_QHF_FH_JSI11Kac_4	119.17	44.758			0.81842	0.81552	167.63	6	1	Median	NaN	NaN	NaN	0	0	Median	13.334	15.814	145.73	2	1	Median	0.81842	0.79819	2.9444	2	0	Median	0.71871	0.79168	4.2882	2	0	Median	211220000	77749000	133470000	0	0	0	80846000	2216000	78630000	64927000	37181000	27746000	65450000	38352000	27098000	19452	819;2765	18425	119667;119668;119669;119670;119671;119672	162101;162102;162103;162104;162105;162106	162102	465;466		6	
GKQLIVANAGDSR	1	Acetyl (K)	1369.7314	0.73137672	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						3					1		2	47.135	38.1	2	0.00011136	20916	160513_QHF_FH_JSI12Kac_3	103.34	74.615			0.83537	0.90552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83537	0.90552	NaN	1	0	Median	2980900	1655600	1325200	0	0	0	464260	464260	0	0	0	0	2516600	1191300	1325200	19453	279	18426	119673;119674;119675	162107;162108;162109	162108	151		3	
GKSLETQK	2	Acetyl (K)	931.49746	0.4974606	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		16.682	9.2776	2	0.038957	7143	160513_QHF_FH_JSI11Kac_3	59.245	17.136			0.07432	0.078184	29.478	2	2	Median	NaN	NaN	NaN	0	0	Median	0.084213	0.096304	NaN	1	1	Median	0.065589	0.063474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3158300	2793700	364590	0	0	0	1649100	1477400	171720	1509100	1316200	192870	0	0	0	19454	5646	18427	119676;119677	162110;162111	162110			2	
GKSSFFSDR	1	Acetyl (K)	1071.4985	0.49852324	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	1	2	2	3	47.356	37.15	2	6.0211E-05	20841	160513_QHF_FH_JSI11Kac_5	123.75	96.495			0.91162	0.9547	19.719	8	0	Median	1.5041	1.2679	NaN	1	0	Median	0.98151	1.1699	1.8787	2	0	Median	0.96782	0.9526	15.372	2	0	Median	0.7886	0.85505	8.6997	3	0	Median	114640000	59470000	55170000	15737000	6107500	9629100	30613000	16474000	14138000	28856000	15126000	13730000	39435000	21762000	17673000	19455	154	18428	119678;119679;119680;119681;119682;119683;119684;119685	162112;162113;162114;162115;162116;162117;162118;162119;162120;162121	162117	90		10	
GKTAQGLSPVDQR	1	Acetyl (K)	1397.7263	0.72629134	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					2	6					4	2	2	37.931	29.145	2;3	1.4556E-19	16535	160513_QHF_FH_JSI12Kac_3	151.1	126.75			0.88941	0.93483	7.9888	6	0	Median	NaN	NaN	NaN	0	0	Median	0.74629	0.88055	11.701	2	0	Median	0.91359	0.88286	4.8466	2	0	Median	0.89178	0.98304	0.90061	2	0	Median	53290000	29385000	23905000	0	0	0	19900000	10891000	9009000	10184000	5404100	4780100	23206000	13090000	10116000	19456	5461	18429	119686;119687;119688;119689;119690;119691;119692;119693	162122;162123;162124;162125;162126;162127;162128;162129;162130;162131;162132	162127	3431		11	
GKTAQGLSPVDQRK	2	Acetyl (K)	1525.8213	0.82125436	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	1	0	0	2	By MS/MS	By MS/MS		By MS/MS	14.8	0.433							1	3		1	1		2	31.15	21.832	3	0.0054768	12726	160513_QHF_FH_JSI9Kac_5	59.709	41.908			1.0153	0.97623	14.88	4	0	Median	1.0917	0.92812	NaN	1	0	Median	0.75018	0.8904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0388	1.1299	13.522	2	0	Median	26636000	14083000	12553000	6527400	2892400	3635000	5887300	3703600	2183700	0	0	0	14221000	7487200	6734200	19457	5461	18430	119694;119695;119696;119697	162133;162134;162135	162134	3431		3	
GKTFVYLK	2	Unmodified	954.55385	0.55385327	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				15.215	14.233	3	0.044106	11215	160511_QHF_FH_JSI9i_3	24.155	7.9521			3.1017	2.5617	NaN	1	0	Median	3.1017	2.5617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28484000	7949200	20535000	28484000	7949200	20535000	0	0	0	0	0	0	0	0	0	19458	3821	18431	119698	162136	162136			1	
GKVEAAGPGGESEPTGSGGTLAHTPR	1	Acetyl (K)	2461.1833	0.18334369	5422	Q9UMN6	KMT2B	Histone-lysine N-methyltransferase 2B	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	44.779	34.69	3	4.7567E-08	19747	160513_QHF_FH_JSI10Kac_4	77.053	73.243			0.93144	1.0443	3.1349	2	0	Median	NaN	NaN	NaN	0	0	Median	0.909	1.0677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95445	1.0214	NaN	1	0	Median	11438000	5583500	5854900	0	0	0	6027800	2954200	3073600	0	0	0	5410600	2629300	2781300	19459	5422	18432	119699;119700	162137;162138;162139;162140	162137	3406		4	
GKVEEVELPVEK	2	Unmodified	1354.7344	0.73439641	4325	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.747	5	7	4							2	4	6	4	41.667	41.113	2;3	9.1439E-10	35889	160511_QHF_FH_JSI9i_2	141.73	105.78			0.90183	0.88549	16.034	16	0	Median	1.0148	0.87039	0.9939	2	0	Median	0.89277	1.0546	24.275	4	0	Median	0.8631	0.85444	10.128	6	0	Median	0.93074	0.92823	11.319	4	0	Median	3917100000	2022600000	1894600000	484750000	209090000	275660000	634420000	311400000	323020000	1317100000	732690000	584430000	1480800000	769380000	711450000	19460	4325	18433	119701;119702;119703;119704;119705;119706;119707;119708;119709;119710;119711;119712;119713;119714;119715;119716	162141;162142;162143;162144;162145;162146;162147;162148;162149;162150;162151;162152;162153;162154;162155;162156;162157;162158;162159	162150			19	
GKVEYLLK	2	Unmodified	948.56442	0.56441796	2123	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	30.05	29.345	2;3	0.0057933	24248	160511_QHF_FH_JSI12i_3	99.802	56.556			0.85851	0.85074	43.526	8	0	Median	0.69245	0.56687	18.126	2	0	Median	0.79178	0.95537	13.889	2	0	Median	0.8617	0.80704	4.9413	2	0	Median	1.685	1.7083	1.4315	2	0	Median	1106500000	505740000	600720000	231250000	111500000	119750000	175090000	98283000	76806000	223740000	100150000	123590000	476380000	195810000	280570000	19461	2123	18434	119717;119718;119719;119720;119721;119722;119723;119724	162160;162161;162162;162163;162164;162165;162166	162166			7	
GKVPITYLELLN	1	Unmodified	1358.781	0.78095267	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	90.818	90.257	2	0.00075557	78353	160511_QHF_FH_JSI12i_3	87.913	77.96			1.0581	1.0328	5.2399	4	0	Median	1.33	1.1387	NaN	1	0	Median	0.92377	1.0259	NaN	1	0	Median	1.086	1.0161	NaN	1	0	Median	1.0309	1.0398	NaN	1	0	Median	179940000	94580000	85364000	8897900	4114900	4782900	20386000	10535000	9850800	43410000	22613000	20797000	107250000	57317000	49933000	19462	5559	18435	119725;119726;119727;119728	162167;162168;162169	162168			3	
GKVQFQGKK	3	2 Acetyl (K)	1102.6135	0.61349341	840	P05455	SSB	Lupus La protein	yes	yes	2	0	0	2			By MS/MS		14	0							1					1		37.22	27.772	2	0.058113	17014	160513_QHF_FH_JSI11Kac_4	62.546	29.284			1.5036	1.3766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5036	1.3766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1593600	603960	989690	0	0	0	0	0	0	1593600	603960	989690	0	0	0	19463	840	18436	119729	162170	162170			0	
GKWKPPMIDNPSYQGIWK	3	Acetyl (K)	2186.0983	0.098280842	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		81.114	71.8	3	0.0010118	39534	160513_QHF_FH_JSI11Kac_6	96.447	86.525			0.059377	0.058758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.059377	0.058758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38231000	36193000	2037400	0	0	0	0	0	0	38231000	36193000	2037400	0	0	0	19464	1299	18438	119730	162171	162171	1234		1	
GKWNSSNGVEEK	2	Acetyl (K)	1375.6368	0.63680763	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							3				2		1	32.105	22.77	2	0.00065522	13740	160513_QHF_FH_JSI10Kac_4	88.681	69.41			0.81529	0.87416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81529	0.87416	NaN	1	0	Median	3525600	1474600	2050900	0	0	0	965830	0	965830	0	0	0	2559700	1474600	1085100	19465	2682	18439	119731;119732;119733	162172;162173;162174	162172	2628		3	
GKYEGPK	2	Acetyl (K)	819.41267	0.41266834	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	15.756	7.9317	2	0.0064974	6427	160513_QHF_FH_JSI12Kac_4	97.798	45.115			0.71391	0.73637	42.415	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.4229	0.57501	2	0	Median	0.71391	0.70292	10.763	2	0	Median	0.55373	0.60557	23.469	2	0	Median	148630000	78350000	70283000	0	0	0	54283000	23895000	30388000	52259000	28559000	23700000	42091000	25897000	16194000	19466	2970	18440	119734;119735;119736;119737;119738;119739	162175;162176;162177;162178;162179;162180;162181;162182;162183	162181	2729		9	
GKYKEETIEK	3	Acetyl (K)	1265.6503	0.65033243	1949	P61254	RPL26	60S ribosomal protein L26	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	23.319	15.722	3	0.044287	9941	160513_QHF_FH_JSI12Kac_4	41.399	20.17			0.62846	0.67907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62846	0.67907	NaN	1	0	Median	5893800	2821000	3072800	0	0	0	0	0	0	0	0	0	5893800	2821000	3072800	19467	1949	18441	119740	162184	162184	1959		1	
GKYSPTVQTR	1	Acetyl (K)	1177.6091	0.60913632	416	O60437	PPL	Periplakin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				2	1	3	29.738	21.174	2	4.9667E-08	13484	160513_QHF_FH_JSI11Kac_4	134.25	70.761			0.90249	1.0055	17.846	6	0	Median	NaN	NaN	NaN	0	0	Median	0.77124	0.9012	10.3	2	0	Median	0.85928	0.84247	NaN	1	0	Median	0.95795	1.0466	15.15	3	0	Median	46773000	23288000	23485000	0	0	0	11235000	5837700	5397700	14022000	7698200	6323600	21515000	9752000	11763000	19468	416	18442	119741;119742;119743;119744;119745;119746	162185;162186;162187;162188;162189;162190;162191	162188	208		6	
GLAAEDSGGDSK	1	Unmodified	1105.4887	0.48874641	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	2	3	9.9707	5.7824	2	3.0762E-08	4276	160513_QHF_FH_JSI10Kac_3	114.5	91.756			0.93216	0.94811	9.0472	9	0	Median	1.1571	0.94217	NaN	1	0	Median	0.89776	1.0226	14.645	3	0	Median	0.9564	0.93536	0.97922	2	0	Median	0.88752	0.97199	2.3187	3	0	Median	1204800000	588160000	616680000	282120000	116600000	165520000	339320000	177260000	162060000	287370000	144000000	143370000	296030000	150310000	145730000	19469	1514	18443	119747;119748;119749;119750;119751;119752;119753;119754;119755	162192;162193;162194;162195;162196;162197;162198;162199;162200;162201;162202;162203;162204	162202			13	
GLAAFLK	1	Unmodified	718.43776	0.43776088	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	57.018	53.338	2	0.002611	46676	160511_QHF_FH_JSI11i_3	109.88	73.294			0.92522	0.91644	14.836	12	0	Median	1.1715	0.94093	13.507	3	0	Median	0.80034	0.9095	16.427	3	0	Median	0.9688	0.92344	6.2708	3	0	Median	0.87803	0.88144	26.186	3	0	Median	2566200000	1375700000	1190500000	503700000	236480000	267220000	532320000	279340000	252970000	512870000	276200000	236670000	1017300000	583650000	433670000	19470	542	18444	119756;119757;119758;119759;119760;119761;119762;119763;119764;119765;119766;119767	162205;162206;162207;162208;162209;162210;162211;162212;162213;162214;162215;162216;162217;162218;162219;162220;162221;162222	162205			18	
GLAAGSAETLPANFR	0	Unmodified	1473.7576	0.75759147	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.611	56.105	2	1.9524E-16	48071	160511_QHF_FH_JSI12i_2	119.03	102.77			2.3867	2.3839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3867	2.3839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52685000	12238000	40447000	0	0	0	0	0	0	52685000	12238000	40447000	0	0	0	19471	2357	18445	119768;119769	162223;162224	162223			2	
GLAAHYFFPR	0	Unmodified	1177.6033	0.60326308	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	61.842	52.759	2;3	4.3267E-12	28953	160513_QHF_FH_JSI10Kac_6	154.01	135.03			0.97576	0.98892	8.6586	6	0	Median	1.0632	0.90139	12.917	2	0	Median	0.847	1.0049	2.0752	2	0	Median	0.99034	0.94963	NaN	1	0	Median	0.98166	1.0527	NaN	1	0	Median	411200000	207630000	203570000	108840000	49270000	59569000	193330000	103280000	90045000	66103000	34131000	31972000	42932000	20949000	21982000	19472	107	18446	119770;119771;119772;119773;119774;119775	162225;162226;162227;162228;162229;162230;162231;162232;162233;162234;162235	162234			10	
GLAAITMDK	1	Unmodified	918.48445	0.48445308	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.147	40.771	2	0.018999	34833	160511_QHF_FH_JSI12i_2	51.059	21.91			1.4786	1.5699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4786	1.5699	NaN	1	1	Median	26437000	13538000	12899000	0	0	0	0	0	0	0	0	0	26437000	13538000	12899000	19473	3196	18447	119776	162236	162236			1	
GLAEVAVK	1	Unmodified	785.4647	0.46470391	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	28.363	27.635	2	0.019076	23208	160511_QHF_FH_JSI11i_2	47.082	20.12			1.0014	1.0512	14.141	4	1	Median	NaN	NaN	NaN	0	0	Median	0.88595	1.0611	24.096	2	0	Median	1.0707	1.0835	NaN	1	0	Median	0.93654	1.0198	NaN	1	1	Median	102430000	53019000	49409000	0	0	0	51374000	28845000	22529000	19933000	8739700	11193000	31121000	15434000	15687000	19474	3748	18448	119777;119778;119779;119780	162237;162238	162238			2	
GLAFELVYSPAIK	1	Unmodified	1406.781	0.78095267	2086	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.997	79.329	2	0.049846	44325	160513_QHF_FH_JSI10Kac_6	55.806	45.802			0.73797	0.86861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73797	0.86861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48614000	29165000	19449000	0	0	0	48614000	29165000	19449000	0	0	0	0	0	0	19475	2086	18449	119781	162239	162239			0	
GLAFIQDPDGYWIEILNPNK	1	Unmodified	2302.1634	0.16338352	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		7								3		1	3	102.17	102.05	2;3	4.1977E-185	87957	160511_QHF_FH_JSI12i_2	321.81	271.6			0.80889	0.73079	15.319	7	4	Median	0.82915	0.73079	17.881	3	2	Median	NaN	NaN	NaN	0	0	Median	0.80889	0.81775	NaN	1	0	Median	0.66513	0.73017	16.347	3	2	Median	991170000	555690000	435480000	309610000	161170000	148440000	0	0	0	167900000	97736000	70164000	513670000	296780000	216880000	19476	2221	18450	119782;119783;119784;119785;119786;119787;119788	162240;162241;162242;162243;162244;162245;162246;162247;162248;162249	162240			10	
GLAFLDELR	0	Unmodified	1032.5604	0.56039521	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	83.089	82.298	2	0.00014996	73280	160511_QHF_FH_JSI10i_2	89.355	68.834			1.1883	1.215	17.656	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79719	1.0207	NaN	1	0	Median	1.1883	1.215	NaN	1	0	Median	0.77931	0.85356	NaN	1	0	Median	45342000	21363000	23979000	0	0	0	12374000	6848700	5525300	20611000	7864900	12746000	12358000	6649900	5707800	19477	3021	18451	119789;119790;119791	162250;162251;162252;162253	162253			3	
GLAGAVSELLR	0	Unmodified	1084.6241	0.6240581	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		75.59	74.638	2	4.1781E-18	61415	160511_QHF_FH_JSI9i_3	161.79	118.54			0.8258	0.85616	9.9412	3	1	Median	1.1844	0.96072	NaN	1	0	Median	0.75335	0.85616	NaN	1	0	Median	0.8258	0.7882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1287400000	697650000	589780000	381790000	179980000	201810000	483450000	290450000	193000000	422180000	227210000	194970000	0	0	0	19478	5616	18452	119792;119793;119794	162254;162255;162256;162257;162258;162259;162260	162258			7	
GLAGEIVGEVR	0	Unmodified	1098.6033	0.60332266	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	52.824	52.002	2	0.00085583	44770	160511_QHF_FH_JSI12i_2	79.148	17.987			0.87072	0.87322	15.1	5	1	Median	1.1783	0.99956	NaN	1	0	Median	0.72448	0.87322	NaN	1	0	Median	0.80377	0.80364	NaN	1	0	Median	0.94524	0.97315	23.878	2	1	Median	301950000	158190000	143760000	52234000	22098000	30135000	56912000	30508000	26404000	66562000	37393000	29169000	126240000	68191000	58047000	19479	4262	18453	119795;119796;119797;119798;119799	162261;162262;162263;162264	162261			1	
GLAGHLK	1	Unmodified	694.41261	0.41260876	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							2			1	9.5577	9.1885	2	0.025066	6072	160511_QHF_FH_JSI12i_3	54.765	7.9982			1.0942	0.90367	14.588	3	1	Median	1.2518	1.0159	16.554	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86275	0.87369	NaN	1	0	Median	1228000000	643950000	584080000	602880000	252150000	350730000	0	0	0	0	0	0	625150000	391810000	233340000	19480	3860	18454	119800;119801;119802	162265;162266	162266			2	
GLAGHLKSNSPR	1	Acetyl (K)	1277.684	0.6840326	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		28.236	19.074	2;3	0.006214	11327	160513_QHF_FH_JSI11Kac_6	85.377	57.635			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3823100	3823100	0	0	0	0	0	0	0	3823100	3823100	0	0	0	0	19481	3860	18455	119803;119804	162267;162268	162268	2970		2	
GLAGLGDVAEVRK	1	Unmodified	1283.7197	0.7197494	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		47.513	46.73	3	0.0015002	39048	160511_QHF_FH_JSI10i_3	37.657	19.033			0.44149	0.45146	46.173	2	0	Median	NaN	NaN	NaN	0	0	Median	0.28948	0.3257	NaN	1	0	Median	0.67333	0.62577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218000000	132180000	85828000	0	0	0	106550000	68054000	38496000	111460000	64123000	47332000	0	0	0	19482	992	18456	119805;119806	162269	162269			1	
GLAHAIR	0	Unmodified	736.43441	0.43440684	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		12.492	4.7014	2	0.011236	4582	160513_QHF_FH_JSI10Kac_6	80.999	52.47			0.64385	0.77054	8.0657	3	1	Plateau	0.90123	0.77713	NaN	1	1	Median	0.64385	0.77054	NaN	1	0	Median	0.67231	0.67307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17175000	9179400	7995900	3997200	1960900	2036300	8862800	4970300	3892500	4315400	2248200	2067100	0	0	0	19483	1188	18457	119807;119808;119809	162270;162271;162272	162272			3	
GLAHPPSYSNPPVYHGNSPK	1	Unmodified	2118.0283	0.028287021	3877	Q92738	USP6NL	USP6 N-terminal-like protein	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			35.693	34.252	4	0.015435	27912	160511_QHF_FH_JSI9i_3	28.202	19.039			0.75196	0.7273	1.9561	2	0	Median	0.88606	0.71731	NaN	1	0	Median	0.63816	0.73743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62073000	35609000	26464000	29562000	15033000	14529000	32510000	20576000	11935000	0	0	0	0	0	0	19484	3877	18458	119810;119811	162273;162274;162275	162274			3	
GLAHYLK	1	Unmodified	800.45447	0.45447358	4045	Q96EI5	TCEAL4	Transcription elongation factor A protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	19.494	18.712	2	0.002611	14882	160511_QHF_FH_JSI12i_3	109.88	82.564			0.92746	0.86339	41.432	3	1	Plateau	1.2475	1.0216	NaN	1	0	Median	1.6561	1.8963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85612	0.86339	NaN	1	0	Median	278040000	131990000	146050000	89226000	36836000	52390000	49278000	18277000	31000000	0	0	0	139530000	76875000	62657000	19485	4045	18459	119812;119813;119814	162276;162277;162278;162279	162278			4	
GLAIQHPGTQVLIGTDSIPNLHK	1	Unmodified	2408.3176	0.31759275	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	73.273	72.476	3;4	7.5705E-16	62892	160511_QHF_FH_JSI12i_3	126.61	121.61			0.91151	0.97634	10.51	9	2	Median	1.1532	0.94664	4.3688	2	0	Median	0.87401	1.0258	15.66	3	1	Median	1.1236	1.034	4.2386	2	0	Median	0.87489	0.86765	6.9219	2	1	Median	1386200000	680170000	706060000	229730000	108330000	121400000	288520000	151800000	136720000	470040000	211840000	258210000	397940000	208200000	189740000	19486	2947	18460	119815;119816;119817;119818;119819;119820;119821;119822;119823	162280;162281;162282;162283;162284;162285;162286;162287;162288;162289;162290;162291;162292;162293	162292			14	
GLAITFVSDENDAK	1	Unmodified	1478.7253	0.72528829	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	3.44	4	6	3					1		3	4	4	3	65.607	64.154	2	4.1973E-81	58577	160511_QHF_FH_JSI12i_1	247.31	224.57			0.89721	0.88749	60.23	14	7	Median	1.0362	0.87296	11.5	3	3	Median	0.71094	0.86249	10.361	4	2	Median	1.2841	1.2555	112.9	4	2	Linear	0.85906	0.94538	15.193	3	0	Plateau	2844800000	1494600000	1350200000	580970000	278290000	302680000	895420000	508410000	387010000	641280000	324990000	316290000	727170000	382940000	344230000	19487	2474;97	18461	119824;119825;119826;119827;119828;119829;119830;119831;119832;119833;119834;119835;119836;119837	162294;162295;162296;162297;162298;162299;162300;162301;162302;162303;162304;162305;162306;162307;162308;162309;162310;162311;162312;162313;162314;162315;162316;162317	162305			24	
GLALALFGGEPK	1	Unmodified	1171.6601	0.66010926	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	81.54	81.314	2	3.6542E-06	66977	160511_QHF_FH_JSI9i_3	100.48	79.013			1.6859	1.6817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6859	1.6817	NaN	1	1	Median	104350000	39584000	64767000	0	0	0	0	0	0	0	0	0	104350000	39584000	64767000	19488	1674	18462	119838;119839	162318;162319	162318			2	
GLALDLEDGNFLK	1	Unmodified	1403.7296	0.72964538	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	90.015	89.555	2	1.4079E-10	79519	160511_QHF_FH_JSI10i_2	151.15	134.12			0.88896	0.93639	18.148	7	1	Median	1.0242	0.89662	NaN	1	0	Median	0.63855	0.75819	31.054	2	0	Median	0.89133	0.86827	10.682	2	0	Median	0.97004	1.0089	8.6439	2	1	Median	199430000	107110000	92312000	32225000	18923000	13302000	63236000	31662000	31574000	53861000	29538000	24323000	50103000	26991000	23112000	19489	2970	18463	119840;119841;119842;119843;119844;119845;119846	162320;162321;162322;162323;162324;162325;162326;162327;162328;162329;162330;162331;162332	162331			13	
GLALGIAK	1	Unmodified	741.47487	0.47487467	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.47	2	3	1					4		2	2	3	3	46.75	42.778	2	0.00058835	36730	160511_QHF_FH_JSI12i_2	103.29	5.2557			0.95253	0.92877	10.106	9	0	Median	1.2557	1.0662	17.266	2	0	Median	0.78375	0.90919	2.589	2	0	Median	0.95253	0.92877	0.56408	3	0	Median	0.91962	0.97443	13.742	2	0	Median	656330000	328960000	327370000	117570000	58448000	59123000	27727000	15846000	11881000	172010000	84538000	87469000	339020000	170130000	168900000	19490	1629	18464	119847;119848;119849;119850;119851;119852;119853;119854;119855;119856	162333;162334;162335;162336;162337	162333			5	
GLALHDILTEIHLFVHR	0	Unmodified	1983.1054	0.10541513	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	94.443	86.057	4	1.3365E-33	48209	160513_QHF_FH_JSI9Kac_6	171.91	153.75			1.3366	1.4897	78.525	4	0	Median	0.61849	0.52513	NaN	1	0	Median	0.76861	0.89625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3455	2.5327	3.202	2	0	Median	155400000	84284000	71114000	42932000	24937000	17995000	80636000	50733000	29903000	0	0	0	31830000	8613700	23216000	19491	1505	18465	119857;119858;119859;119860	162338;162339;162340;162341;162342	162338			4	
GLALSNSDVIR	0	Unmodified	1143.6248	0.62478638	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.31		5					2	3		2	2	4	2	54.314	47.89	2	7.2006E-07	41364	160511_QHF_FH_JSI11i_2	114.89	67.237			1.0477	1.1812	52.214	9	4	Median	1.7055	1.4527	30.811	2	1	Median	0.86451	1.0348	23.539	2	0	Median	0.86912	0.84614	70.085	3	2	Plateau	1.8211	2.0217	75.997	2	1	Median	555520000	264070000	291450000	106760000	40340000	66419000	140410000	68962000	71447000	156520000	77538000	78979000	151830000	77227000	74606000	19492	5663	18466	119861;119862;119863;119864;119865;119866;119867;119868;119869;119870	162343;162344;162345;162346;162347;162348;162349;162350;162351;162352;162353	162349			11	
GLALVLSNVHFTGEK	1	Unmodified	1583.8671	0.86714192	1540	P42575	CASP2	Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	5.89	5.4			7						2	4	3	1	1	76.857	75.178	2;3	8.1926E-17	39216	160513_QHF_FH_JSI10Kac_6	122.93	105.71			0.75474	0.7449	18.81	8	2	Median	0.91338	0.75286	12.767	3	2	Median	0.63046	0.7314	18.879	3	0	Median	0.75899	0.73703	NaN	1	0	Median	0.99699	1.0275	NaN	1	0	Median	280830000	148450000	132390000	85368000	45192000	40176000	108130000	61990000	46144000	63477000	29016000	34461000	23853000	12248000	11605000	19493	1540	18467	119871;119872;119873;119874;119875;119876;119877;119878;119879	162354;162355;162356;162357;162358;162359;162360;162361	162361			8	
GLANPEPAPEPK	1	Unmodified	1218.6245	0.62445203	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	29.123	26.637	2	3.0237E-08	23472	160511_QHF_FH_JSI11i_1	140.07	92.877			1.2026	1.1432	28.341	4	0	Median	NaN	NaN	NaN	0	0	Median	1.44	1.6699	NaN	1	0	Median	1.2026	1.1432	9.4443	2	0	Median	0.79609	0.84687	NaN	1	0	Median	282450000	138750000	143700000	0	0	0	102670000	54249000	48418000	74262000	31132000	43130000	105530000	53369000	52156000	19494	235	18468	119880;119881;119882;119883	162362;162363;162364;162365;162366	162362			5	
GLAPALLYQFLMNGIR	0	Unmodified	1775.9756	0.97564651	2814	Q3KQZ1	SLC25A35	Solute carrier family 25 member 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	3	1	2		99.007	90.348	2;3	1.6656E-74	51486	160513_QHF_FH_JSI11Kac_6	265.55	242.63			1.1754	1.0732	10.595	6	2	Median	1.2309	1.0772	9.3113	3	2	Median	0.89481	1.0692	NaN	1	0	Median	1.1313	1.0639	19.562	2	0	Median	NaN	NaN	NaN	0	0	Median	1983300000	965720000	1017600000	750120000	351050000	399070000	644260000	337530000	306730000	588940000	277140000	311800000	0	0	0	19495	2814	18469	119884;119885;119886;119887;119888;119889	162367;162368;162369;162370;162371	162367			5	
GLAPDLPEDLYHLIK	1	Unmodified	1692.9087	0.90867238	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	5.1	3	8	5						3	4	4	5	6	99.236	97.707	2;3	1.5954E-22	88415	160511_QHF_FH_JSI11i_2	157.86	146.81			0.89969	0.93295	10.054	19	2	Median	1.1526	0.9602	4.6207	4	0	Median	0.80953	0.92405	3.3259	4	0	Linear	0.89969	0.9261	5.0227	5	1	Median	0.89708	0.94784	17.305	6	1	Median	14668000000	7558200000	7109300000	2022100000	939830000	1082300000	2906900000	1503300000	1403600000	5033600000	2768500000	2265100000	4704900000	2346500000	2358300000	19496	1995	18470	119890;119891;119892;119893;119894;119895;119896;119897;119898;119899;119900;119901;119902;119903;119904;119905;119906;119907;119908	162372;162373;162374;162375;162376;162377;162378;162379;162380;162381;162382;162383;162384;162385;162386;162387;162388;162389;162390;162391;162392;162393;162394;162395;162396;162397;162398;162399	162387			27	
GLAPDLPEDLYHLIKK	2	Unmodified	1821.0036	0.0036354	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	95.1	95.108	4	2.3003E-05	82641	160511_QHF_FH_JSI12i_3	92.457	82.536			1.0644	0.99849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0644	0.99849	NaN	1	1	Median	32127000	13906000	18221000	0	0	0	0	0	0	0	0	0	32127000	13906000	18221000	19497	1995	18471	119909	162400;162401	162401			2	
GLAPEQPVTLR	0	Unmodified	1179.6612	0.66117189	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1			1	1	2	1	47.73	44.914	2	5.6452E-05	41071	160511_QHF_FH_JSI12i_1	102.55	86.884			1.3691	1.3852	32.382	5	1	Median	1.5981	1.3814	NaN	1	0	Median	2.109	2.6443	NaN	1	0	Median	1.2284	1.2455	15.028	2	0	Median	1.3691	1.4559	NaN	1	1	Median	468080000	203460000	264610000	106940000	44749000	62188000	104650000	45151000	59501000	165110000	72703000	92410000	91374000	40858000	50515000	19498	3313	18472	119910;119911;119912;119913;119914	162402;162403;162404;162405;162406	162402			4	
GLAPEVADR	0	Unmodified	926.48214	0.48214489	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.02	2					1	3			1	1	1	3	31.26	23.837	2	0.00040657	20917	160511_QHF_FH_JSI9i_1	81.296	31.938			0.98013	1.0102	8.0138	5	0	Median	1.0974	0.88217	NaN	1	0	Median	0.91559	1.088	NaN	1	0	Median	1.0262	1.0007	NaN	1	0	Median	0.95872	1.0323	3.0649	2	0	Median	283040000	128860000	154170000	258880000	116860000	142020000	4972900	2400600	2572200	11352000	5515700	5835900	7835000	4090600	3744400	19499	1012;1666	18473	119915;119916;119917;119918;119919;119920	162407;162408;162409;162410;162411;162412;162413;162414;162415;162416;162417	162412			11	
GLAPNQESHLQVPEK	1	Unmodified	1645.8424	0.84238373	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	2	3	36.766	36.054	2;3	1.3352E-10	30718	160511_QHF_FH_JSI12i_2	121.99	102.31			1.0325	1.002	19.11	7	3	Median	1.4684	1.2448	30.688	2	2	Median	1.0325	1.2598	NaN	1	0	Median	1.0052	0.96714	4.7358	2	1	Median	0.94823	1.0024	15.439	2	0	Median	748170000	326510000	421660000	117260000	47865000	69397000	125710000	56304000	69402000	265480000	125710000	139770000	239720000	96634000	143090000	19500	681	18474	119921;119922;119923;119924;119925;119926;119927;119928	162418;162419;162420;162421;162422;162423;162424;162425;162426;162427;162428;162429;162430	162422			13	
GLAPNTPGK	1	Unmodified	853.46577	0.46576654	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.852	14.938	2	0.014962	12023	160511_QHF_FH_JSI12i_2	45.68	21.885			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19501	351	18475	119929	162431	162431			1	
GLAPVQAYLHIPDIIK	1	Unmodified	1747.0032	0.0032414695	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	100.73	100.64	2;3	9.3635E-11	88322	160511_QHF_FH_JSI11i_2	144.29	128.4			0.97369	0.89557	15.986	9	7	Median	1.2262	1.0147	17.667	2	1	Median	0.80905	0.95998	20.402	2	2	Median	0.87284	0.85346	0.44547	2	1	Median	1.0151	1.03	22.28	3	3	Median	1695100000	888590000	806490000	185090000	78636000	106460000	271610000	156530000	115080000	507120000	271610000	235510000	731250000	381820000	349440000	19502	1002	18476	119930;119931;119932;119933;119934;119935;119936;119937;119938;119939	162432;162433;162434;162435;162436;162437;162438;162439;162440;162441;162442;162443;162444	162441			13	
GLASGDVAAIFMENR	0	Unmodified	1549.7559	0.75587691	3092	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		83.072	83.072	2	0.000311	74190	160511_QHF_FH_JSI11i_3	92.19	66.071			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19503	3092	18477	119940	162445	162445			1	
GLASPLGHR	0	Unmodified	906.50355	0.50354903	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			26.801	18.685	3	0.003692	11054	160513_QHF_FH_JSI10Kac_6	47.853	26.983			1.182	1.1745	10.192	2	0	Median	1.4599	1.2623	NaN	1	0	Median	0.95693	1.0928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16605000	8413700	8191300	3962900	1728600	2234300	12642000	6685100	5957000	0	0	0	0	0	0	19504	3756	18478	119941;119942	162446	162446			1	
GLASWDEGHVLTFLK	1	Unmodified	1671.8621	0.86205654	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	87.838	87.631	2;3	3.0934E-15	76072	160511_QHF_FH_JSI12i_3	176.05	126.7			1.389	1.4825	11.478	6	4	Median	1.9002	1.6254	NaN	1	1	Median	1.1984	1.5201	NaN	1	1	Median	1.4889	1.3838	13.28	2	2	Median	1.3257	1.3266	12.164	2	0	Median	334830000	140470000	194360000	10729000	3691300	7037500	11888000	4518100	7369900	164520000	74485000	90031000	147700000	57775000	89921000	19505	3183	18479	119943;119944;119945;119946;119947;119948	162447;162448;162449;162450;162451;162452;162453;162454	162454			8	
GLATFCLDK	1	Unmodified	1023.5059	0.5059168	115;262	O00264;O15173	PGRMC1;PGRMC2	Membrane-associated progesterone receptor component 1;Membrane-associated progesterone receptor component 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.43	6.07	2	3						2			2	3	2	57.187	53.576	2	3.5787E-05	45974	160511_QHF_FH_JSI12i_2	99.802	57.693			1.1518	1.1843	22.034	7	0	Median	NaN	NaN	NaN	0	0	Median	1.1699	1.3992	23.578	2	0	Median	1.1518	1.1631	14.761	3	0	Median	1.2833	1.4333	24.973	2	0	Median	483440000	222920000	260520000	0	0	0	136380000	57911000	78472000	217890000	113540000	104350000	129170000	51471000	77698000	19506	115;262	18480	119949;119950;119951;119952;119953;119954;119955	162455;162456;162457;162458;162459;162460;162461;162462	162457			8	
GLATSLQNDLQEVPK	1	Unmodified	1611.8468	0.84680041	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	68.497	67.546	2	9.7451E-15	59094	160511_QHF_FH_JSI11i_2	186.17	150.66			0.93832	0.95949	15.714	6	3	Median	0.94629	0.82599	NaN	1	0	Median	0.81735	0.99641	13.317	2	1	Median	0.93775	0.92072	NaN	1	0	Median	1.0417	1.1331	17.685	2	2	Median	260660000	135380000	125280000	57271000	29150000	28121000	93275000	51386000	41889000	55508000	27845000	27663000	54604000	27000000	27604000	19507	3494	18481	119956;119957;119958;119959;119960;119961	162463;162464;162465;162466;162467;162468;162469;162470	162468			8	
GLATVIR	0	Unmodified	728.45447	0.45447358	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	3	4	3	32.948	28.489	2	5.5366E-14	23790	160511_QHF_FH_JSI12i_3	170.43	76.839			0.87142	0.94605	18.194	14	2	Median	1.2658	1.0334	18.743	4	0	Median	0.72916	0.91699	10.355	3	2	Median	0.90449	0.85687	19.253	4	0	Median	0.7493	0.74752	18.162	3	0	Median	3740900000	2012100000	1728800000	816770000	334600000	482170000	843660000	480410000	363250000	1043100000	587190000	455910000	1037300000	609860000	427490000	19508	3213	18482	119962;119963;119964;119965;119966;119967;119968;119969;119970;119971;119972;119973;119974;119975	162471;162472;162473;162474;162475;162476;162477;162478;162479;162480;162481;162482;162483;162484;162485;162486;162487;162488	162486			18	
GLATVIYPYLLPFISK	1	Unmodified	1794.0331	0.033144614	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		100.65	95.875	2	0.00026447	85221	160511_QHF_FH_JSI10i_3	86.313	56.505			0.72324	0.75921	0.69751	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65052	0.76296	NaN	1	1	Median	0.80409	0.75547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155900000	90152000	65744000	0	0	0	9438100	5006800	4431300	146460000	85146000	61313000	0	0	0	19509	610	18483	119976;119977	162489;162490	162489			2	
GLAVFISDIR	0	Unmodified	1089.6182	0.61824444	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.51		1	4					1	4	3	2	3	2	79	74.909	2	1.9813E-12	40240	160513_QHF_FH_JSI10Kac_6	157.91	102.38			0.94945	0.9579	40.02	9	2	Median	1.079	0.90928	68.224	3	1	Median	0.91154	1.0892	18.17	2	0	Median	0.91678	0.86312	32.493	2	1	Median	0.88148	0.92552	7.6697	2	0	Median	1326300000	725930000	600410000	312690000	179380000	133310000	385060000	207180000	177870000	277100000	163530000	113570000	351490000	175840000	175650000	19510	726;635	18484	119978;119979;119980;119981;119982;119983;119984;119985;119986;119987	162491;162492;162493;162494;162495;162496;162497;162498;162499;162500;162501;162502	162502			11	
GLAYGLYLR	0	Unmodified	1024.5706	0.57056597	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	1	2	69.134	62.961	2	1.8002E-07	34127	160513_QHF_FH_JSI11Kac_6	138.85	97.196			0.64734	0.6315	23.224	6	5	Median	0.78163	0.65046	30.344	2	2	Median	0.36474	0.42789	NaN	1	1	Median	0.67745	0.64918	NaN	1	1	Median	0.65568	0.67652	13.646	2	1	Median	450320000	277230000	173090000	81516000	46589000	34927000	104030000	74521000	29507000	124840000	74526000	50318000	139930000	81593000	58338000	19511	4598	18485	119988;119989;119990;119991;119992;119993	162503;162504;162505;162506;162507;162508;162509	162503			7	
GLAYVEYENESQASQAVMK	1	Unmodified	2115.9783	0.97828487	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	62.451	61.368	2;3	4.0519E-43	52751	160511_QHF_FH_JSI12i_2	164.11	144.53			0.73565	0.85592	54.595	2	1	Median	NaN	NaN	NaN	0	0	Median	0.47377	0.5818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1423	1.2592	NaN	1	0	Median	93885000	51237000	42648000	0	0	0	34757000	20978000	13779000	0	0	0	59128000	30259000	28869000	19512	2604	18486	119994;119995;119996	162510;162511;162512;162513	162510			3	
GLCAIAQAESLR	0	Unmodified	1287.6605	0.66051996	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		3	3						1	1	2	2	2	56.088	54.068	2	4.0089E-53	47958	160511_QHF_FH_JSI11i_3	216.45	187.49			1.1586	1.1122	19.506	7	1	Median	1.2285	1.0514	NaN	1	0	Median	1.0259	1.2011	10.873	2	0	Median	0.92997	0.92433	2.9744	2	0	Median	1.3825	1.4461	5.8244	2	1	Median	4378300000	2045500000	2332800000	337130000	151850000	185280000	733800000	408310000	325490000	2241600000	1125300000	1116300000	1065800000	360100000	705720000	19513	1227	18487	119997;119998;119999;120000;120001;120002;120003	162514;162515;162516;162517;162518;162519;162520;162521;162522	162515			9	
GLCGAIHSSIAK	1	Unmodified	1212.6285	0.62849155	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.55		1	7						7	4	5	3	3	32.825	28.449	2;3	9.9004E-23	23468	160511_QHF_FH_JSI12i_3	174.41	132.54			0.91104	0.89021	25.873	14	2	Median	1.224	1.0398	9.3159	4	0	Median	0.84147	0.99381	15.963	4	1	Median	0.78556	0.76793	4.1315	3	0	Median	0.74447	0.75132	53.293	3	1	Plateau	2796400000	1329000000	1467400000	455940000	172520000	283420000	615370000	337870000	277500000	574560000	317220000	257340000	1150500000	501380000	649140000	19514	1454	18488	120004;120005;120006;120007;120008;120009;120010;120011;120012;120013;120014;120015;120016;120017;120018	162523;162524;162525;162526;162527;162528;162529;162530;162531;162532;162533;162534;162535;162536;162537;162538;162539;162540;162541;162542;162543;162544;162545;162546	162542			24	
GLCGTVLIHK	1	Unmodified	1096.6063	0.60629955	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	1		3	37.154	36.565	2;3	7.2805E-11	30626	160511_QHF_FH_JSI10i_3	144.12	102.62			1.8009	1.8433	35.144	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.78362	0.91626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4602	1.4993	29.216	2	2	Median	521540000	152260000	369280000	0	0	0	27448000	12636000	14813000	0	0	0	494090000	139620000	354470000	19515	2817	18489	120019;120020;120021;120022;120023	162547;162548;162549;162550;162551;162552	162547			6	
GLCHAYWAPNFWALYNALDK	1	Unmodified	2409.1365	0.13645726	4474	Q9BVK2	ALG8	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.522	86.148	3	9.3633E-26	46472	160513_QHF_FH_JSI12Kac_6	150.45	138.14			0.99374	0.9582	22.484	4	1	Median	1.1188	0.96352	NaN	1	1	Median	0.78937	0.9529	NaN	1	0	Median	0.88264	0.82912	NaN	1	0	Median	1.3099	1.4014	NaN	1	0	Median	917420000	427040000	490380000	110960000	36793000	74166000	282200000	115010000	167190000	361260000	196310000	164950000	163000000	78929000	84070000	19516	4474	18490	120024;120025;120026;120027	162553;162554;162555;162556;162557;162558;162559	162556			7	
GLDEDETNFLDEVSR	0	Unmodified	1737.7693	0.76933795	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.295	74.807	2	1.8634E-117	68041	160511_QHF_FH_JSI11i_1	280.21	264.83			0.93909	0.95017	5.4879	4	2	Median	1.2009	0.99672	NaN	1	0	Median	0.77264	0.89608	NaN	1	1	Median	0.99831	0.98981	NaN	1	0	Median	0.88338	0.91211	NaN	1	1	Median	415880000	217840000	198040000	98497000	47213000	51284000	103240000	57730000	45515000	111660000	54620000	57042000	102470000	58273000	44198000	19517	4610	18491	120028;120029;120030;120031	162560;162561;162562;162563;162564;162565	162561			6	
GLDFALLQK	1	Unmodified	1003.5702	0.57023162	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4	4.93	1	4						1		1	1	3	1	77.096	74.305	2	4.4485E-06	65992	160511_QHF_FH_JSI11i_2	119.27	94.352			1.0548	1.0316	6.9973	5	0	Median	1.2937	1.1025	NaN	1	0	Median	0.77849	0.96162	NaN	1	0	Median	1.0782	1.0902	7.8098	2	0	Median	0.91069	1.0249	NaN	1	0	Median	237370000	123380000	114000000	39193000	16057000	23135000	47497000	27349000	20148000	81714000	42910000	38804000	68971000	37061000	31910000	19518	2353	18492	120032;120033;120034;120035;120036;120037	162566;162567;162568;162569;162570	162569			5	
GLDGAVDMGAR	0	Unmodified	1060.4971	0.49714303	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.627	33.045	2	5.7198E-05	29787	160511_QHF_FH_JSI12i_1	94.309	31.763			1.1197	1.1496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1197	1.1496	NaN	1	0	Median	96835000	45568000	51267000	0	0	0	0	0	0	0	0	0	96835000	45568000	51267000	19519	3479	18493	120038	162571;162572;162573	162573			3	
GLDIPEVDLVIQSSPPK	1	Unmodified	1805.9775	0.97748023	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	97.873	97.713	2;3	5.1391E-06	88728	160511_QHF_FH_JSI11i_1	112.51	88.655			0.90456	1.0287	28.45	7	2	Median	0.64482	0.54376	NaN	1	0	Median	0.76982	0.87948	22.168	2	0	Median	1.0076	0.97839	18.367	2	2	Median	1.1128	1.153	11.362	2	0	Median	138290000	76790000	61504000	8492800	4834600	3658100	50580000	32936000	17644000	31764000	15169000	16595000	47457000	23850000	23607000	19520	4940	18494	120039;120040;120041;120042;120043;120044;120045	162574;162575;162576;162577;162578;162579;162580;162581	162575			8	
GLDIPSIK	1	Unmodified	841.49092	0.49091866	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	58.418	56.522	2	0.0033453	50875	160511_QHF_FH_JSI10i_1	73.248	30.125			0.87473	0.88327	6.0761	9	0	Median	0.99053	0.83501	7.488	2	0	Median	0.73447	0.88959	2.5257	2	0	Median	0.97877	0.96349	2.7367	2	0	Median	0.84208	0.87591	3.1235	3	0	Plateau	320180000	175040000	145140000	58920000	30564000	28356000	88666000	47787000	40879000	89538000	49446000	40092000	83058000	47247000	35811000	19521	3377	18495	120046;120047;120048;120049;120050;120051;120052;120053;120054	162582;162583;162584;162585;162586;162587;162588;162589;162590;162591;162592;162593;162594;162595;162596	162587			15	
GLDISHISQR	0	Unmodified	1124.5938	0.5938206	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									3	3	33.978	33.923	2;3	8.2154E-13	28728	160511_QHF_FH_JSI12i_3	193.1	146.97			1.0339	0.96285	20.042	6	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0214	0.96077	5.9071	3	2	Median	1.1146	1.1456	30.972	3	2	Median	1229700000	634880000	594870000	0	0	0	0	0	0	687390000	369110000	318280000	542360000	265770000	276590000	19522	3503	18496	120055;120056;120057;120058;120059;120060	162597;162598;162599;162600;162601;162602;162603;162604	162604			8	
GLDISNVK	1	Unmodified	844.46543	0.46543219	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	5.11	6	2					2			3	1	3	3	35.249	32.672	2	0.0007303	29174	160511_QHF_FH_JSI11i_1	98.997	54.386			1.0334	1.0337	49.751	10	4	Median	1.1936	1.0529	60.797	3	2	Median	0.85648	1.0148	NaN	1	0	Median	1.0431	1.0132	26.731	3	1	Median	1.0238	1.0979	81.28	3	1	Median	3672700000	1758600000	1914100000	1073500000	424250000	649220000	753820000	427870000	325940000	974550000	505650000	468900000	870850000	400820000	470030000	19523	154	18497	120061;120062;120063;120064;120065;120066;120067;120068;120069;120070	162605;162606;162607;162608;162609;162610;162611;162612;162613;162614;162615;162616	162606			12	
GLDIYVWR	0	Unmodified	1020.5393	0.53926584	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0			By matching	By MS/MS	11.3	6.6		1							2			1	2	77.609	70.937	2	0.0033014	36662	160513_QHF_FH_JSI12Kac_6	86.794	64.708			1.4277	1.4003	51.174	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4277	1.4003	NaN	1	0	Median	0.73503	0.79795	55.935	2	1	Median	86440000	49496000	36945000	0	0	0	0	0	0	39403000	18750000	20653000	47037000	30746000	16292000	19524	2344	18498	120071;120072;120073	162617;162618	162618			2	
GLDLDVDPLSK	1	Unmodified	1170.6132	0.61321864	5784				yes	yes	0	0	0	0	By MS/MS				3	0			1							1				32.408	30.991	2	0.033376	25328	160511_QHF_FH_JSI9i_3	39.148	0	+		1.2457	1.0263	NaN	1	0	Median	1.2457	1.0263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21956000	10317000	11638000	21956000	10317000	11638000	0	0	0	0	0	0	0	0	0	19525	5784	18499	120074	162619	162619			1	
GLDLEQITSATLMK	1	Unmodified	1518.7963	0.79634474	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	93.785	93.452	2	0.0029619	85021	160511_QHF_FH_JSI11i_1	67.153	55.699			1.6043	1.5404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6043	1.5404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8146000	5145300	3000700	0	0	0	0	0	0	8146000	5145300	3000700	0	0	0	19526	3196	18500	120075;120076	162620;162621	162620			2	
GLDLGGR	0	Unmodified	686.37114	0.37113788	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	21.965	21.418	2	0.0061548	18526	160511_QHF_FH_JSI10i_1	92.191	17.674			0.93529	1.0391	12.732	6	0	Median	NaN	NaN	NaN	0	0	Median	0.85188	1.0391	5.5302	2	0	Median	1.1405	1.0963	16.987	2	0	Median	0.95425	1.02	20.864	2	0	Median	687180000	354650000	332530000	0	0	0	213290000	121100000	92181000	276660000	139290000	137380000	197230000	94260000	102980000	19527	2286	18501	120077;120078;120079;120080;120081;120082	162622;162623;162624;162625	162624			4	
GLDLHGLLAFIQLQQCAQDR	0	Unmodified	2295.1794	0.17938471	670	O95274	LYPD3	Ly6/PLAUR domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	96.867	88.373	3	1.2838E-18	47835	160513_QHF_FH_JSI12Kac_6	133.24	117.11			0.99615	1.0181	15.427	4	3	Median	NaN	NaN	NaN	0	0	Median	0.89865	1.0662	NaN	1	1	Median	0.99615	0.95636	2.322	2	2	Median	1.2624	1.325	NaN	1	0	Median	1518500000	746640000	771840000	0	0	0	205630000	86848000	118780000	1096100000	562660000	533400000	216790000	97132000	119650000	19528	670	18502	120083;120084;120085;120086	162626;162627;162628;162629	162628			4	
GLDLISVR	0	Unmodified	871.51272	0.51271674	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	58.119	57.195	2	0.0033437	49090	160511_QHF_FH_JSI12i_2	73.26	35.702			1.466	1.5354	33.14	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9139	1.9409	NaN	1	1	Median	1.1229	1.2147	NaN	1	0	Median	37318000	14487000	22830000	0	0	0	0	0	0	19617000	6902900	12714000	17701000	7584400	10116000	19529	2939	18503	120087;120088;120089	162630;162631;162632	162630			3	
GLDLLEK	1	Unmodified	786.44872	0.4487195	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.863	48.443	2	0.025722	44349	160511_QHF_FH_JSI11i_1	57.177	15.525			0.1559	0.16815	1.9981	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14392	0.17054	NaN	1	1	Median	0.16889	0.16579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1020200000	853220000	167020000	0	0	0	561990000	475210000	86779000	458250000	378010000	80239000	0	0	0	19530	2082	18504	120090;120091	162633;162634	162633			2	
GLDNTEFQGK	1	Unmodified	1107.5197	0.51965261	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.17	6.18	3					2	1			1		3	2	34.166	24.928	2	2.0363E-19	22690	160511_QHF_FH_JSI12i_1	157.99	119.03			0.73591	0.72971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73591	0.72971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3128400	1678600	1449900	0	0	0	0	0	0	3128400	1678600	1449900	0	0	0	19531	4498;4343	18505	120092;120093;120094;120095;120096;120097	162635;162636;162637;162638;162639;162640	162636			6	
GLDPALGSETLASR	0	Unmodified	1385.7151	0.71505795	5609	Q9Y448	KNSTRN	Small kinetochore-associated protein	yes	yes	0	0	0	0	By MS/MS			By matching	1	0	2									1			1	54.16	53.24	2	0.001191	47303	160511_QHF_FH_JSI9i_1	65.234	59.081			0.83671	0.76991	8.8864	2	0	Median	0.99718	0.81984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70206	0.72302	NaN	1	0	Median	133050000	72618000	60436000	62331000	30873000	31458000	0	0	0	0	0	0	70723000	41745000	28978000	19532	5609	18506	120098;120099	162641	162641			1	
GLDPARVNVPVIGGHAGK	1	Unmodified	1755.9744	0.97440096	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			54.896	53.333	3;4	0.00094835	43760	160511_QHF_FH_JSI9i_3	55.864	39.12			0.92632	0.88415	9.4588	2	0	Median	1.0404	0.82695	NaN	1	0	Median	0.82475	0.9453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99884000	49241000	50643000	50352000	24412000	25940000	49532000	24829000	24703000	0	0	0	0	0	0	19533	1504	18507	120100;120101;120102	162642;162643	162643			2	
GLDPLASEDTSR	0	Unmodified	1259.5994	0.59935949	659	O95229	ZWINT	ZW10 interactor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	39.947	39.335	2	0.0052885	35676	160511_QHF_FH_JSI12i_1	62.633	42.846			0.51072	0.53256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51072	0.53256	NaN	1	1	Median	38462000	25187000	13275000	0	0	0	0	0	0	0	0	0	38462000	25187000	13275000	19534	659	18508	120103	162644	162644			1	
GLDPVEILQER	0	Unmodified	1267.6772	0.67721588	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	76.67	76.006	2	0.00014671	69035	160511_QHF_FH_JSI11i_1	84.658	56.26			1.8936	1.8474	46.688	6	4	Median	1.2313	0.98283	NaN	1	1	Median	1.4944	1.782	69.971	2	1	Median	1.8936	1.8474	27.533	2	1	Median	2.4056	2.6909	NaN	1	1	Median	561060000	209730000	351330000	25193000	12361000	12832000	178830000	72495000	106340000	238400000	82725000	155680000	118640000	42147000	76488000	19535	1737	18509	120104;120105;120106;120107;120108;120109;120110	162645;162646;162647;162648;162649;162650;162651;162652	162646			7	
GLDPYNVLAPK	1	Unmodified	1185.6394	0.63937381	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.28	4	4	3			1	3			4	5	3	3	67.339	64.178	2	3.0974E-18	58512	160511_QHF_FH_JSI10i_1	163.77	144.99			0.9573	0.98789	12.815	13	1	Median	1.0965	0.95006	10.867	3	1	Plateau	0.86864	1.0371	8.1841	4	0	Median	1.0066	0.98122	18.297	3	0	Median	0.9573	1.0385	12.152	3	0	Median	3927900000	1995300000	1932700000	956210000	424580000	531630000	836650000	440410000	396240000	996810000	516150000	480660000	1138300000	614130000	524140000	19536	974	18510	120111;120112;120113;120114;120115;120116;120117;120118;120119;120120;120121;120122;120123;120124;120125	162653;162654;162655;162656;162657;162658;162659;162660;162661;162662;162663;162664;162665;162666;162667;162668;162669;162670;162671;162672;162673;162674;162675;162676;162677;162678;162679;162680;162681	162666			29	
GLDSNGLEK	1	Unmodified	931.46108	0.4610751	5830				yes	yes	0	0	0	0			By MS/MS		3	0			2									2		5.6299	5.6299	2	0.00072092	3356	160511_QHF_FH_JSI11i_3	75.378	16.398	+		0.97094	0.90582	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97094	0.90582	0	2	0	Median	NaN	NaN	NaN	0	0	Median	787880000	454640000	333240000	0	0	0	0	0	0	787880000	454640000	333240000	0	0	0	19537	5830	18511	120126;120127	162682;162683	162682			1	
GLDTVVALLADVVLQPR	0	Unmodified	1778.0302	0.030184501	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.45		7	5						3	2	5	5	3	103.61	101.37	2;3	7.3747E-31	93181	160511_QHF_FH_JSI11i_3	234.41	208.97			0.8184	0.87739	17.04	10	0	Median	1.1778	1.0231	12.334	2	0	Median	0.69044	0.81449	10.606	2	0	Median	1.0712	1.0213	28.553	3	0	Plateau	0.83484	0.85014	4.6322	3	0	Plateau	308830000	173350000	135480000	81860000	41231000	40629000	120600000	75422000	45179000	55943000	29104000	26839000	50423000	27592000	22831000	19538	2299	18512	120128;120129;120130;120131;120132;120133;120134;120135;120136;120137;120138;120139;120140;120141;120142	162684;162685;162686;162687;162688;162689;162690;162691;162692;162693;162694;162695;162696;162697;162698;162699;162700	162685			17	
GLDVDSLVIEHIQVNK	1	Unmodified	1777.9574	0.95741349	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.4	1	8	4						3	3	4	4	5	84.146	82.763	2;3	2.6822E-58	73781	160511_QHF_FH_JSI11i_2	266.69	251.49			0.731	0.76204	61.322	15	5	Median	0.94552	0.81659	86.61	3	1	Median	0.59037	0.71946	74.592	3	0	Median	0.65964	0.65328	57.525	4	3	Median	0.731	0.76204	60.09	5	1	Median	6108800000	3669400000	2439500000	1025900000	586250000	439700000	1321700000	816050000	505650000	1730000000	1029000000	701020000	2031200000	1238100000	793080000	19539	1143	18513	120143;120144;120145;120146;120147;120148;120149;120150;120151;120152;120153;120154;120155;120156;120157;120158	162701;162702;162703;162704;162705;162706;162707;162708;162709;162710;162711;162712;162713;162714;162715;162716;162717;162718;162719;162720;162721;162722;162723;162724;162725;162726;162727;162728;162729	162715			29	
GLDVEDVK	1	Unmodified	873.44436	0.4443624	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	6.04	8					3	2			2	4	3	4	35.341	31.403	1;2	0.00024549	28074	160511_QHF_FH_JSI10i_1	116.73	75.223			0.9105	0.9949	25.426	13	2	Median	0.74204	0.60364	1.5216	2	0	Median	0.83809	0.98368	12.376	4	1	Median	1.2463	1.2336	4.1938	3	0	Median	0.92179	0.98744	18.435	4	1	Median	5431200000	2711900000	2719300000	1332200000	612920000	719260000	1338900000	808070000	530860000	1305200000	595090000	710090000	1454900000	695820000	759100000	19540	1128;3893	18514	120159;120160;120161;120162;120163;120164;120165;120166;120167;120168;120169;120170;120171	162730;162731;162732;162733;162734;162735;162736;162737;162738;162739;162740;162741;162742;162743;162744;162745;162746;162747	162738			17	
GLDVGAR	0	Unmodified	686.37114	0.37113788	3726	Q8TDX6	CSGALNACT1	Chondroitin sulfate N-acetylgalactosaminyltransferase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.483	21.273	2	0.034652	17612	160511_QHF_FH_JSI12i_2	50.025	2.1089			1.0572	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0572	1.1822	NaN	1	0	Median	164380000	76645000	87734000	0	0	0	0	0	0	0	0	0	164380000	76645000	87734000	19541	3726	18515	120172	162748	162748			1	
GLDYGGVAR	0	Unmodified	906.45593	0.45593014	4199;1597	Q96PU5;P46934	NEDD4L;NEDD4	E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	27.224	26.813	2	0.0087891	22401	160511_QHF_FH_JSI11i_2	51.854	14.834			0.82218	0.95109	23.257	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82218	0.95109	NaN	1	0	Median	0.8961	0.92265	NaN	1	0	Median	1.3331	1.4002	NaN	1	0	Median	103940000	53793000	50150000	0	0	0	38929000	22926000	16003000	34722000	18486000	16236000	30291000	12381000	17911000	19542	4199;1597	18516	120173;120174;120175	162749;162750	162749			2	
GLDYLHSEK	1	Unmodified	1060.5189	0.51892433	5206;5721	Q9P289;Q9Y6E0	STK26;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.06		7	1					1		1	2	4	2	26.669	24.846	2;3	2.6325E-07	20773	160511_QHF_FH_JSI11i_2	117.81	87.626			0.919	0.98475	41.839	8	5	Median	1.4494	1.2606	NaN	1	1	Median	0.75349	0.93739	13.632	2	1	Median	1.2261	1.2587	44.686	3	2	Plateau	1.3739	1.4772	64.008	2	1	Median	1025100000	528850000	496290000	56706000	25314000	31392000	303010000	168040000	134970000	542890000	277580000	265300000	122540000	57913000	64629000	19543	5206;5721	18517	120176;120177;120178;120179;120180;120181;120182;120183;120184	162751;162752;162753;162754;162755;162756;162757	162755			7	
GLEAADK	1	Unmodified	702.35482	0.35481911	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	8.275	5.6418	2	0.011246	5437	160511_QHF_FH_JSI10i_1	71.342	17.788			1.2014	1.2088	12.208	6	0	Median	1.4214	1.1536	NaN	1	0	Median	1.0209	1.2469	NaN	1	0	Median	1.4296	1.4255	12.555	2	0	Median	1.0737	1.1417	3.6932	2	0	Median	952090000	494720000	457360000	227240000	109610000	117630000	277610000	168000000	109620000	242800000	111350000	131460000	204440000	105770000	98663000	19544	366	18518	120185;120186;120187;120188;120189;120190	162758;162759;162760;162761;162762;162763;162764;162765	162763			8	
GLEAADKK	2	Acetyl (K)	872.46035	0.46034682	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	19.536	12.518	2	0.013353	8353	160513_QHF_FH_JSI12Kac_3	78.149	22.027			0.39413	0.42347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39413	0.42347	NaN	1	1	Median	8070100	4523600	3546500	0	0	0	0	0	0	0	0	0	8070100	4523600	3546500	19545	366	18519	120191	162766	162766	186		1	
GLEAALVYVENAHVAGK	1	Unmodified	1739.9206	0.92063405	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			79.806	72.669	3	0.00081925	40352	160513_QHF_FH_JSI10Kac_6	54.073	42.305			1.8952	1.9277	48.388	2	0	Median	1.5844	1.3691	NaN	1	0	Median	2.2669	2.7141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144960000	57304000	87656000	48479000	20041000	28438000	96481000	37263000	59218000	0	0	0	0	0	0	19546	2485	18520	120192;120193	162767;162768	162768			1	
GLEDEQK	1	Unmodified	817.38176	0.38176214	2	A0A096LP55;P07919	UQCRHL;UQCRH	Cytochrome b-c1 complex subunit 6;Cytochrome b-c1 complex subunit 6, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	2	3	7.4855	4.5201	2	0.002495	4714	160511_QHF_FH_JSI10i_1	110.63	56.108			0.93714	1.0529	27.53	8	1	Median	1.418	1.1598	NaN	1	0	Median	1.1526	1.3723	25.53	2	0	Median	0.96298	0.94153	40.426	2	0	Median	0.77531	0.85453	10.053	3	1	Median	2763600000	1432100000	1331500000	600820000	270530000	330290000	720830000	407480000	313360000	704830000	356070000	348750000	737130000	398030000	339100000	19547	2	18521	120194;120195;120196;120197;120198;120199;120200;120201	162769;162770;162771;162772;162773;162774;162775;162776;162777	162775			9	
GLEDPSQVVR	0	Unmodified	1098.5669	0.56693715	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.65	5					1	1			1	1	3	2	40.444	36.75	2	0.00036973	33430	160511_QHF_FH_JSI12i_1	76.679	57.585			1.0751	1.076	38.71	6	1	Median	1.2319	1.0205	NaN	1	0	Median	1.004	1.1715	NaN	1	0	Median	0.78801	0.75937	23.892	3	1	Median	2.0903	2.1463	NaN	1	0	Median	445470000	197130000	248350000	98884000	34198000	64686000	106350000	50986000	55362000	141940000	74956000	66979000	98306000	36986000	61319000	19548	3741	18522	120202;120203;120204;120205;120206;120207;120208	162778;162779;162780;162781;162782;162783;162784;162785;162786;162787;162788	162780			11	
GLEDTDGDGDSGK	1	Unmodified	1264.5055	0.50551869	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1					1	1	1	1	10.942	8.7736	2	3.1988E-16	7496	160511_QHF_FH_JSI9i_1	168.3	126.85			0.96164	0.96362	4.0669	4	0	Median	1.1719	0.99225	NaN	1	0	Median	0.8046	0.91756	NaN	1	0	Median	0.95195	0.93581	NaN	1	0	Median	0.97143	0.99351	NaN	1	0	Median	97423000	43775000	53648000	29789000	10164000	19625000	35112000	16611000	18502000	1162100	684980	477140	31359000	16315000	15044000	19549	3566	18523	120209;120210;120211;120212	162789;162790;162791;162792;162793;162794	162793			6	
GLEEFFDDPK	1	Unmodified	1195.5397	0.53971935	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	67.501	67.052	2	0.0003893	61006	160511_QHF_FH_JSI12i_1	86.136	74.288			1.0505	1.1401	2.5345	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.92982	1.1023	NaN	1	1	Median	1.2095	1.1401	NaN	1	0	Median	1.0505	1.0849	NaN	1	1	Median	194080000	96426000	97654000	0	0	0	62921000	34666000	28255000	66504000	29341000	37164000	64655000	32419000	32236000	19550	4871	18524	120213;120214;120215;120216;120217	162795;162796;162797;162798;162799;162800	162798			6	
GLEEITVHNKDEVYQILEK	2	Unmodified	2256.1638	0.16377745	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.759	73.468	3	2.7383E-06	63711	160511_QHF_FH_JSI12i_3	98.796	85.566			0.50804	0.51077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50804	0.51077	NaN	1	1	Median	36241000	19973000	16268000	0	0	0	0	0	0	0	0	0	36241000	19973000	16268000	19551	1779	18525	120218	162801	162801			1	
GLEELERK	1	Unmodified	972.52401	0.52400971	4192	Q96P63	SERPINB12	Serpin B12	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.6	0.49		2	3							4		1		31.999	31.016	2	0.0090287	25309	160511_QHF_FH_JSI9i_3	64.776	3.9885			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19552	4192	18526	120219;120220;120221;120222;120223	162802;162803;162804;162805;162806	162803			5	
GLEELIDYTGGLK	1	Unmodified	1406.7293	0.72931103	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		88.936	88.443	2	2.9115E-07	77899	160511_QHF_FH_JSI9i_2	97.734	71.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19553	4779	18527	120224;120225	162807;162808	162807			2	
GLEELVK	1	Unmodified	786.44872	0.4487195	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	3.29	8	4	1				1			4	3	4	3	44.514	42.909	2	0.0012439	34789	160511_QHF_FH_JSI11i_2	110.63	18.167			0.1644	0.1673	85.567	13	6	Linear	1.0412	0.88391	70.757	4	1	Median	0.67712	0.83737	94.987	3	1	Median	1.0252	1.0004	107.79	3	2	Median	0.15592	0.33095	121.79	3	2	Plateau	2436600000	1785600000	650950000	430140000	268540000	161600000	775110000	605210000	169900000	584840000	439750000	145090000	646490000	472130000	174360000	19554	512	18528	120226;120227;120228;120229;120230;120231;120232;120233;120234;120235;120236;120237;120238;120239	162809;162810;162811;162812;162813;162814;162815;162816;162817;162818;162819;162820;162821;162822;162823	162822			15	
GLEELVKQK	2	Acetyl (K)	1084.6128	0.61282471	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		59.723	48.689	2	0.01731	27817	160513_QHF_FH_JSI11Kac_4	67.897	39.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19555	512	18529	120240	162824	162824	261		1	
GLEEPEMDPK	1	Unmodified	1143.5118	0.51179004	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		33.809	33.197	2	0.006031	29243	160511_QHF_FH_JSI9i_1	62.463	41.593			1.0217	1.0683	3.1744	3	0	Median	1.3255	1.0813	NaN	1	0	Median	0.89193	1.0683	NaN	1	0	Median	1.0217	1.0183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	392830000	189180000	203650000	131700000	63575000	68129000	128640000	64095000	64543000	132490000	61513000	70978000	0	0	0	19556	2785	18530	120241;120242;120243	162825	162825			1	
GLEESLGMVAQALNR	0	Unmodified	1586.8086	0.80864076	3822	Q8WZ82	OVCA2	Ovarian cancer-associated gene 2 protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				91.714	91.404	2	0.004418	80474	160511_QHF_FH_JSI9i_2	84.198	58.08			0.50701	0.44145	NaN	1	1	Median	0.50701	0.44145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15128000	9370200	5757900	15128000	9370200	5757900	0	0	0	0	0	0	0	0	0	19557	3822	18531	120244	162826	162826			1	
GLEETVAK	1	Unmodified	845.44945	0.44944778	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	20.479	17.037	2	0.00073487	10667	160513_QHF_FH_JSI11Kac_3	97.798	53.077			1.0723	1.1085	10.334	7	3	Median	1.3933	1.1327	NaN	1	0	Median	0.89858	1.0645	1.9234	2	1	Median	1.0921	1.0573	6.6887	2	1	Median	1.1679	1.2621	13.759	2	1	Median	1169300000	566600000	602690000	294680000	137630000	157050000	301470000	150800000	150660000	215550000	100710000	114840000	357600000	177460000	180140000	19558	1400	18532	120245;120246;120247;120248;120249;120250;120251	162827;162828;162829;162830;162831;162832;162833	162829			7	
GLEEYLEK	1	Unmodified	979.48623	0.48622722	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				50.971	49.761	2	0.0095222	44348	160511_QHF_FH_JSI9i_1	64.42	34.235			1.2267	1.03	NaN	1	1	Median	1.2267	1.03	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27450000	13558000	13891000	27450000	13558000	13891000	0	0	0	0	0	0	0	0	0	19559	4164	18533	120252	162834	162834			1	
GLEFLSVPSTYYK	1	Unmodified	1502.7657	0.76569654	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.86	5	4	5					4	1	4	5	5	5	85.719	82.965	2	8.7217E-53	75992	160511_QHF_FH_JSI10i_2	215.89	189.96			0.89449	0.96218	22.224	18	5	Median	1.1795	1.0015	26.517	4	1	Median	0.77752	0.95723	19.576	5	2	Median	0.93085	0.92262	23.314	4	0	Median	0.82221	0.8411	25.339	5	2	Median	2107000000	1109900000	997090000	364230000	162070000	202160000	510990000	280130000	230860000	652750000	365180000	287570000	578990000	302490000	276510000	19560	1395	18534	120253;120254;120255;120256;120257;120258;120259;120260;120261;120262;120263;120264;120265;120266;120267;120268;120269;120270;120271	162835;162836;162837;162838;162839;162840;162841;162842;162843;162844;162845;162846;162847;162848;162849;162850;162851;162852;162853;162854;162855;162856;162857;162858;162859;162860;162861;162862;162863;162864;162865;162866;162867;162868;162869	162867			35	
GLEFLSVPSTYYKQLR	1	Acetyl (K)	1942.02	0.020013746	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.799	80.45	2	3.8807E-06	45016	160513_QHF_FH_JSI11Kac_6	158.04	126.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11358000	11358000	0	0	0	0	0	0	0	11358000	11358000	0	0	0	0	19561	1395	18535	120272	162870	162870	1352		1	
GLEFPMTDLDMLSPIHTPQR	0	Unmodified	2297.1184	0.11842394	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.32	101.19	3	1.647E-11	88890	160511_QHF_FH_JSI11i_2	128.32	113.07			1.085	1.089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63407000	29923000	33483000	0	0	0	0	0	0	63407000	29923000	33483000	0	0	0	19562	448	18536	120273	162871	162871			1	
GLEFQISNVK	1	Unmodified	1133.6081	0.60807369	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		5								2	1		2	60.094	59.036	2	0.00078087	52204	160511_QHF_FH_JSI10i_2	83.647	58.073			0.76898	0.66912	35.889	3	3	Median	0.76898	0.66912	NaN	1	1	Median	0.48307	0.60144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0427	1.173	NaN	1	1	Median	111190000	62112000	49083000	31827000	15751000	16076000	29983000	21329000	8654300	0	0	0	49384000	25031000	24353000	19563	285	18537	120274;120275;120276;120277;120278	162872;162873;162874;162875;162876	162876			5	
GLEGERPAR	0	Unmodified	983.51484	0.514842	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.12	2	7	5					3	3	4	6	6	4	8.3928	5.7045	2;3	1.4532E-05	5514	160511_QHF_FH_JSI10i_2	88.948	45.865			0.97427	1.0189	13.05	20	2	Median	1.2215	1.0088	10.635	4	1	Linear	0.8336	1.0139	11.663	6	0	Median	0.96065	0.9892	14.365	6	1	Median	1.0238	1.0771	14.369	4	0	Median	11989000000	6413700000	5575200000	3598100000	1639700000	1958500000	5587200000	3341400000	2245800000	2569300000	1316100000	1253300000	234150000	116570000	117580000	19564	1595	18538	120279;120280;120281;120282;120283;120284;120285;120286;120287;120288;120289;120290;120291;120292;120293;120294;120295;120296;120297;120298	162877;162878;162879;162880;162881;162882;162883;162884;162885;162886;162887;162888;162889;162890;162891;162892;162893;162894;162895;162896;162897;162898;162899;162900;162901	162894			25	
GLEGWEK	1	Unmodified	817.39702	0.39701828	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	29.857	28.804	2	0.0036762	24173	160511_QHF_FH_JSI11i_2	89.55	48.048			1.1809	1.2406	67.661	4	1	Median	1.8418	1.5904	NaN	1	0	Median	0.75315	0.93238	108.09	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86396	0.96776	NaN	1	0	Median	306090000	160470000	145620000	79411000	33800000	45611000	130610000	72237000	58377000	0	0	0	96064000	54434000	41631000	19565	1356	18539	120299;120300;120301;120302;120303	162902;162903;162904;162905;162906	162904			5	
GLEHPLFPK	1	Unmodified	1036.5706	0.57056597	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	38.868	38.211	3	0.0069803	33509	160511_QHF_FH_JSI9i_2	41.876	33.989			0.83687	0.91437	28.802	4	0	Median	0.80718	0.70536	NaN	1	0	Median	0.75875	0.92105	NaN	1	0	Median	0.86766	0.90773	NaN	1	0	Median	1.4125	1.4124	NaN	1	0	Median	104410000	52607000	51807000	18856000	10292000	8564100	20964000	10569000	10395000	22192000	12247000	9945200	42401000	19499000	22902000	19566	467	18540	120304;120305;120306;120307	162907;162908;162909	162907			1	
GLEHVTVDDLVAEITPK	1	Unmodified	1834.9676	0.96764382	4893	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	91.759	91.168	3	1.083E-06	80196	160511_QHF_FH_JSI11i_2	107.07	100.49			0.88091	0.95084	5.4923	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75029	0.9328	NaN	1	0	Median	1.0109	1.0343	NaN	1	0	Median	0.88091	0.95084	NaN	1	0	Median	221380000	128880000	92496000	0	0	0	68462000	39912000	28550000	95811000	61468000	34343000	57105000	27503000	29603000	19567	4893	18541	120308;120309;120310	162910;162911;162912;162913;162914;162915;162916	162914			7	
GLEISGTFTHR	0	Unmodified	1216.62	0.62003536	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.45		1	9						7	4	6	4	3	45.46	40.933	2;3	8.5436E-27	22655	160513_QHF_FH_JSI10Kac_6	179.8	127.02			0.99024	0.99208	21.722	16	2	Median	1.3229	1.0649	22.718	4	0	Median	0.89096	1.0572	30.487	5	1	Median	1.1558	1.0857	17.547	4	1	Linear	0.91681	0.99097	7.618	3	0	Median	1578500000	745880000	832570000	188050000	79634000	108420000	348870000	183910000	164950000	582890000	247780000	335110000	458650000	234550000	224090000	19568	2046	18542	120311;120312;120313;120314;120315;120316;120317;120318;120319;120320;120321;120322;120323;120324;120325;120326;120327	162917;162918;162919;162920;162921;162922;162923;162924;162925;162926;162927;162928;162929;162930;162931;162932;162933;162934;162935;162936;162937;162938;162939;162940;162941	162941			25	
GLELANGIK	1	Unmodified	913.52328	0.52328142	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			1	3	2	3	43.543	42.768	2	2.1666E-06	36782	160511_QHF_FH_JSI11i_2	127.56	77.525			0.96545	0.95225	15.562	6	2	Median	1.1635	0.98199	NaN	1	0	Median	0.80962	0.98206	27.774	2	1	Median	0.87252	0.86227	9.6861	2	1	Median	0.9871	1.0625	NaN	1	0	Median	429630000	232690000	196930000	64853000	35718000	29135000	122800000	65787000	57017000	159250000	86321000	72928000	82721000	44867000	37854000	19569	1060	18543	120328;120329;120330;120331;120332;120333;120334;120335;120336	162942;162943;162944;162945;162946;162947;162948;162949;162950;162951;162952	162950			10	
GLELISK	1	Unmodified	758.4538	0.45380487	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3.5	4.72	3	2					1				1	3	2	43.077	40.765	2	0.013163	34810	160511_QHF_FH_JSI12i_2	71.342	13.175			0.85241	0.8589	19.23	6	1	Median	NaN	NaN	NaN	0	0	Median	0.61083	0.72684	NaN	1	0	Median	0.89056	0.8777	26.352	3	0	Median	0.85241	0.90931	11.13	2	1	Median	426070000	233060000	193020000	0	0	0	60117000	31837000	28279000	207600000	109930000	97672000	158360000	91291000	67066000	19570	611	18544	120337;120338;120339;120340;120341;120342	162953;162954;162955;162956	162954			4	
GLELLAASEAPRDPPGQAK	1	Unmodified	1919.0112	0.011239973	3366	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		56.098	56.098	3	0.035414	49717	160511_QHF_FH_JSI11i_3	45.916	32.744			0.49138	0.45717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49138	0.45717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67712000	47422000	20290000	0	0	0	0	0	0	67712000	47422000	20290000	0	0	0	19571	3366	18545	120343	162957	162957			0	
GLELLENSLLR	0	Unmodified	1255.7136	0.71360139	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	90.761	90.143	2	9.5758E-05	77812	160511_QHF_FH_JSI12i_2	87.913	51.22			0.80016	0.85801	12.146	3	0	Median	NaN	NaN	NaN	0	0	Median	0.58041	0.70188	NaN	1	0	Median	0.84338	0.87351	NaN	1	0	Median	0.80016	0.85801	NaN	1	0	Median	60955000	33124000	27832000	0	0	0	20649000	12605000	8044100	22840000	10627000	12213000	17466000	9891800	7574700	19572	3918	18546	120344;120345;120346	162958;162959;162960;162961;162962;162963	162959			6	
GLEPSQSTAAK	1	Unmodified	1087.551	0.55095274	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	1	3	15.142	11.742	2	2.9459E-06	10213	160511_QHF_FH_JSI12i_1	117.53	90.924			0.99461	1.0141	15.926	7	3	Median	1.1374	0.94588	NaN	1	0	Median	0.81238	0.94755	27.779	2	1	Median	1.142	1.103	NaN	1	0	Median	0.87974	0.91871	16.937	3	2	Plateau	390250000	207440000	182810000	87448000	42490000	44959000	91937000	52506000	39431000	3533800	1403900	2129900	207330000	111040000	96291000	19573	4603	18547	120347;120348;120349;120350;120351;120352;120353	162964;162965;162966;162967;162968;162969;162970	162964			7	
GLEQGNLKK	2	Acetyl (K)	1027.5662	0.56620887	5680	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	29.953	21.784	2	0.027174	13045	160513_QHF_FH_JSI12Kac_3	61.999	12.581			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19574	5680	18548	120354	162971	162971			1	
GLESLPPLRPQQNPVLPVAGER	0	Unmodified	2366.307	0.30702806	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		78.563	77.72	3	1.8677E-22	63935	160511_QHF_FH_JSI9i_3	155.93	131.33			0.97455	1.0455	8.2835	5	0	Median	1.3209	1.0957	6.6257	2	0	Median	0.88559	1.034	6.5409	2	0	Median	0.97455	0.9264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	654380000	315210000	339170000	338110000	148410000	189700000	279270000	147460000	131820000	37001000	19346000	17655000	0	0	0	19575	1872	18549	120355;120356;120357;120358;120359	162972;162973;162974;162975;162976;162977;162978;162979;162980	162976			9	
GLESTTLADK	1	Unmodified	1033.5292	0.52915466	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	5.86	4	2	1			6	2			5	3	3	4	29.728	25.344	2	1.1979E-28	5896	160513_QHF_FH_JSI9Kac_3	178.22	93.158			0.96169	0.98955	29.433	11	2	Median	1.0181	0.83215	56.536	2	0	Median	0.96169	1.1303	12.93	3	0	Median	1.0356	0.98955	7.6616	3	1	Median	0.82884	0.88105	43.736	3	1	Median	4348000000	1800000000	2548100000	1061200000	355450000	705750000	1051600000	523470000	528110000	1091400000	453490000	637910000	1143900000	467550000	676300000	19576	1191	18550	120360;120361;120362;120363;120364;120365;120366;120367;120368;120369;120370;120371;120372;120373;120374	162981;162982;162983;162984;162985;162986;162987;162988;162989;162990;162991;162992;162993;162994;162995;162996;162997;162998;162999;163000;163001;163002;163003	162993			22	
GLETFSQLVWK	1	Unmodified	1306.6921	0.69213767	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.994	88.455	2	1.218E-05	77826	160511_QHF_FH_JSI11i_2	127.76	87.413			1.9813	1.9883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9813	1.9883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56840000	15232000	41608000	0	0	0	0	0	0	56840000	15232000	41608000	0	0	0	19577	860	18551	120375	163004	163004			1	
GLETGSR	0	Unmodified	718.36097	0.36096712	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.56	3	4				1	2			3	2	2	3	6.7417	3.1634	2	0.00034728	3151	160511_QHF_FH_JSI11i_2	135.87	21.842			1.019	0.92861	49.959	10	4	Median	1.073	0.922	89.234	3	1	Median	0.82436	0.98345	33.913	2	2	Median	0.89851	0.89841	10.674	2	0	Median	0.83289	0.93525	16.374	3	1	Median	4978500000	2661500000	2317000000	1044600000	524650000	519920000	1608800000	830150000	778680000	854960000	487100000	367870000	1470100000	819570000	650580000	19578	1395	18552	120376;120377;120378;120379;120380;120381;120382;120383;120384;120385	163005;163006;163007;163008;163009;163010;163011;163012;163013;163014	163012			10	
GLETHLIALK	1	Unmodified	1093.6495	0.64954457	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	52.163	51.212	3	3.2756E-06	44006	160511_QHF_FH_JSI12i_2	109.66	88.291			0.9358	0.94231	38.892	3	1	Median	NaN	NaN	NaN	0	0	Median	0.40567	0.50367	NaN	1	1	Median	0.9358	0.94231	NaN	1	0	Median	0.93818	1.0271	NaN	1	0	Median	188130000	106880000	81249000	0	0	0	60806000	38653000	22153000	69244000	33712000	35532000	58079000	34514000	23565000	19579	2592	18553	120386;120387;120388	163015;163016;163017	163015			3	
GLETTATYDPETQEFILNSPTVTSIK	1	Unmodified	2854.4124	0.41240016	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	92.388	92.174	3	1.1323E-12	83480	160511_QHF_FH_JSI10i_1	88.504	85.624			0.73939	0.82578	45.676	2	2	Median	NaN	NaN	NaN	0	0	Median	0.50295	0.59785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.087	1.1406	NaN	1	1	Median	83939000	44167000	39773000	0	0	0	45037000	29613000	15424000	0	0	0	38902000	14554000	24348000	19580	2624	18554	120389;120390;120391	163018;163019;163020;163021	163019			4	
GLEVINDYHFR	0	Unmodified	1361.6728	0.67279921	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	59.107	58.447	2;3	9.0583E-05	50632	160511_QHF_FH_JSI11i_2	72.531	68.886			0.994	0.95541	19.833	6	0	Median	1.0107	0.85324	NaN	1	0	Median	0.74782	0.91633	NaN	1	0	Median	0.96922	0.95122	6.5287	2	0	Median	1.2676	1.3266	5.3152	2	0	Median	299600000	126440000	173160000	39773000	17192000	22581000	45307000	24627000	20680000	82155000	35760000	46395000	132370000	48859000	83507000	19581	2752	18555	120392;120393;120394;120395;120396;120397;120398	163022;163023;163024;163025;163026	163025			3	
GLEVTAYSPLGSSDR	0	Unmodified	1550.7577	0.75765105	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	62.818	62.02	2	7.2072E-05	53254	160511_QHF_FH_JSI12i_2	142.08	125.06			1.0369	1.0647	8.1938	6	0	Median	1.4089	1.167	12.327	2	0	Median	0.86383	1.0181	NaN	1	0	Median	1.101	1.0643	NaN	1	0	Median	0.97148	1.0459	2.575	2	0	Median	918790000	437520000	481270000	163300000	71754000	91546000	256140000	125790000	130340000	211730000	101160000	110570000	287620000	138820000	148810000	19582	1054	18556	120399;120400;120401;120402;120403;120404	163027;163028;163029;163030;163031;163032;163033;163034	163029			7	
GLEVTDDSPK	1	Unmodified	1059.5084	0.50841922	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	28.958	23.662	2	6.1066E-14	20324	160511_QHF_FH_JSI9i_1	156.92	121.04			0.96982	0.96708	10.025	10	0	Median	1.0787	0.86758	NaN	1	0	Median	0.78783	0.95096	8.3364	3	0	Plateau	0.85464	0.83722	8.1936	3	0	Plateau	0.99476	1.0502	4.2572	3	0	Median	3109800000	1431600000	1678100000	922510000	417440000	505070000	678150000	348410000	329740000	716790000	282850000	433940000	792340000	382940000	409400000	19583	1664	18557	120405;120406;120407;120408;120409;120410;120411;120412;120413;120414	163035;163036;163037;163038;163039;163040;163041;163042;163043;163044;163045;163046;163047;163048;163049;163050;163051;163052;163053;163054;163055	163048			21	
GLEWLWSPQIVGLYNR	0	Unmodified	1930.0101	0.010117761	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.635	87.193	2	0.0024705	47576	160513_QHF_FH_JSI12Kac_6	119.74	90.444			0.75045	0.78714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75045	0.78714	NaN	1	1	Median	51066000	31120000	19946000	0	0	0	0	0	0	0	0	0	51066000	31120000	19946000	19584	5608	18558	120415	163056	163056			1	
GLEYLHFMR	0	Unmodified	1164.575	0.57499942	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	4	3	4	3	65.09	61.413	2;3	7.7117E-12	54438	160511_QHF_FH_JSI11i_3	137.14	122.46			0.94845	0.9533	15.094	11	3	Median	1.0823	0.89693	14.533	2	0	Median	0.70153	0.87105	3.1174	3	0	Plateau	1.1978	1.1145	25.827	3	2	Median	1.0836	0.98726	8.3449	3	1	Plateau	389730000	211940000	177790000	31213000	15122000	16091000	81826000	47500000	34325000	121120000	66346000	54770000	155580000	82971000	72604000	19585	2368	18559	120416;120417;120418;120419;120420;120421;120422;120423;120424;120425;120426;120427;120428;120429	163057;163058;163059;163060;163061;163062;163063;163064;163065;163066;163067;163068;163069;163070;163071;163072	163057			16	
GLEYTGIYR	0	Unmodified	1070.5397	0.53965977	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.011	44.62	2	0.010603	38184	160511_QHF_FH_JSI12i_2	50.04	40.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19586	2948	18560	120430	163073	163073			1	
GLFATQLIR	0	Unmodified	1017.5971	0.59711507	3044	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			68.305	66.82	2	0.0026956	55992	160511_QHF_FH_JSI10i_3	63.565	53.151			0.64061	0.61501	5.3308	2	1	Median	0.78728	0.63863	NaN	1	1	Median	0.52126	0.59225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70447000	38753000	31694000	36010000	18689000	17322000	34437000	20065000	14372000	0	0	0	0	0	0	19587	3044	18561	120431;120432;120433	163074;163075;163076	163074			3	
GLFDEYGSK	1	Unmodified	1014.4658	0.46582612	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.44	5	2	2				3	4		4	4	3	5	48.272	43.13	2	3.6169E-16	39420	160511_QHF_FH_JSI11i_1	170.22	151.48			0.99794	1.0868	34.645	16	2	Median	0.98564	0.83206	55.191	4	1	Median	0.89366	1.0609	3.659	4	0	Median	1.1381	1.1209	10.805	3	0	Median	1.1516	1.2286	39.266	5	1	Median	8569700000	3934800000	4634800000	2270500000	961210000	1309200000	1681600000	801110000	880460000	1613400000	681070000	932360000	3004200000	1491400000	1512800000	19588	1057	18562	120434;120435;120436;120437;120438;120439;120440;120441;120442;120443;120444;120445;120446;120447;120448;120449	163077;163078;163079;163080;163081;163082;163083;163084;163085;163086;163087;163088;163089;163090;163091;163092;163093;163094;163095;163096;163097;163098;163099;163100;163101;163102;163103;163104;163105	163080			29	
GLFDEYGSKK	2	Unmodified	1142.5608	0.56078914	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	2	2	34.51	34.074	2;3	7.1339E-08	28763	160511_QHF_FH_JSI12i_3	123.86	96.745			0.94898	0.99688	26.877	6	0	Median	NaN	NaN	NaN	0	0	Median	0.78768	0.95446	6.6673	2	0	Median	0.85762	0.78538	33.206	2	0	Median	1.2448	1.2749	9.3903	2	0	Median	571250000	283800000	287450000	0	0	0	84264000	51509000	32756000	152980000	92309000	60667000	334010000	139980000	194030000	19589	1057	18563	120450;120451;120452;120453;120454;120455	163106;163107;163108;163109;163110;163111	163109			3	
GLFEEAAK	1	Unmodified	863.43888	0.43888309	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	30.962	30.256	2	0.0014643	25566	160511_QHF_FH_JSI12i_2	89.142	54.318			1.2519	1.1631	33.365	6	1	Median	1.3502	1.1433	NaN	1	0	Median	1.2451	1.4961	53.085	2	1	Median	1.4379	1.4024	24.029	2	0	Median	0.78881	0.88168	NaN	1	0	Median	616390000	273370000	343020000	91095000	43107000	47988000	152410000	61866000	90544000	233700000	102730000	130970000	139190000	65668000	73518000	19590	3503	18564	120456;120457;120458;120459;120460;120461	163112;163113;163114;163115	163112			4	
GLFEVNPWK	1	Unmodified	1088.5655	0.56548059	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	74.348	73.773	2	9.5205E-06	64101	160511_QHF_FH_JSI12i_3	128.61	87.38			0.972	0.81294	29.119	7	4	Median	0.972	0.80412	NaN	1	0	Median	0.6473	0.80312	NaN	1	1	Median	1.0039	0.96799	30.333	2	1	Median	1.37	1.37	33.615	3	2	Median	333940000	144750000	189200000	25637000	14313000	11324000	29642000	18703000	10939000	97841000	50228000	47613000	180820000	61502000	119320000	19591	4877	18565	120462;120463;120464;120465;120466;120467;120468	163116;163117;163118;163119;163120;163121;163122	163122			6	
GLFEVNPWKR	1	Unmodified	1244.6666	0.66659162	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			63.863	62.351	3	4.498E-09	52133	160511_QHF_FH_JSI10i_3	107.21	91.341			0.49967	0.59365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49967	0.59365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19042000	12285000	6756400	0	0	0	19042000	12285000	6756400	0	0	0	0	0	0	19592	4877	18566	120469	163123	163123			1	
GLFFEHDLR	0	Unmodified	1132.5665	0.56654322	267	O15234	CASC3	Protein CASC3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	55.227	54.632	3	2.6014E-05	46808	160511_QHF_FH_JSI12i_3	92.838	86.147			0.83081	0.84612	1.7555	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76076	0.85161	NaN	1	0	Median	0.9119	0.82387	NaN	1	0	Median	0.83081	0.84612	NaN	1	0	Median	110860000	60995000	49860000	0	0	0	20124000	11033000	9090500	39811000	22625000	17186000	50920000	27337000	23584000	19593	267	18567	120470;120471;120472	163124;163125;163126;163127;163128;163129	163129			6	
GLFGVAGK	1	Unmodified	747.42792	0.42792448	3865	Q92626	PXDN	Peroxidasin homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	41.912	40.391	2	0.0059176	34350	160511_QHF_FH_JSI12i_3	60.788	22.586			0.6023	0.69962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6023	0.69962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12321000	6733700	5587500	0	0	0	12321000	6733700	5587500	0	0	0	0	0	0	19594	3865	18568	120473;120474	163130;163131	163131			2	
GLFGVPELSAPEGFHIAQEK	1	Unmodified	2125.0844	0.084404917	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	93.572	93.273	3	3.8395E-08	80741	160511_QHF_FH_JSI12i_3	99.092	91.138			0.93523	1.014	21.18	7	2	Median	1.2521	1.0771	NaN	1	0	Median	0.8791	1.082	9.1771	2	2	Median	0.9726	0.96868	6.1449	2	0	Median	0.7782	0.80277	38.855	2	0	Median	404050000	215470000	188580000	44608000	19391000	25217000	62328000	36510000	25817000	129010000	71564000	57451000	168100000	88002000	80094000	19595	4314	18569	120475;120476;120477;120478;120479;120480;120481	163132;163133;163134;163135;163136;163137;163138;163139;163140	163140			9	
GLFIIDDK	1	Unmodified	919.50148	0.50148335	2249;2364	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.09	8	6	6	3	1	6	5	7	4	11	14	11	10	66.271	61.113	1;2	2.2498E-07	55310	160511_QHF_FH_JSI12i_2	154.31	121.84			1.0163	1.0044	24.712	38	1	Median	1.2091	0.97099	41.392	10	0	Median	0.85459	0.97747	11.838	9	0	Median	1.023	0.98812	12.578	10	1	Median	0.9898	1.0314	19.821	9	0	Median	41542000000	20443000000	21099000000	7319100000	3263800000	4055300000	10051000000	5139000000	4911800000	13349000000	6629100000	6720000000	10823000000	5411000000	5412000000	19596	2249;2364	18570	120482;120483;120484;120485;120486;120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501;120502;120503;120504;120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515;120516;120517;120518;120519;120520;120521;120522;120523;120524;120525;120526;120527	163141;163142;163143;163144;163145;163146;163147;163148;163149;163150;163151;163152;163153;163154;163155;163156;163157;163158;163159;163160;163161;163162;163163;163164;163165;163166;163167;163168;163169;163170;163171;163172;163173;163174;163175;163176;163177;163178;163179;163180;163181;163182;163183;163184;163185;163186;163187;163188;163189;163190;163191;163192;163193;163194;163195;163196;163197;163198;163199;163200;163201;163202;163203;163204;163205;163206;163207;163208;163209;163210;163211;163212;163213;163214;163215;163216;163217;163218;163219;163220;163221;163222;163223;163224;163225;163226;163227;163228;163229;163230;163231;163232;163233;163234;163235;163236;163237;163238;163239;163240;163241;163242;163243;163244;163245	163151			101	
GLFIIDDKGILR	1	Unmodified	1358.7922	0.79218606	2249;2364	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	81.483	80.934	3	9.5339E-05	70301	160511_QHF_FH_JSI12i_3	78.903	74.356			2.003	1.7897	79.355	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.25507	0.31029	20.35	2	2	Median	0.78505	0.73901	NaN	1	0	Median	1.6379	1.5817	NaN	1	0	Median	88414000	48488000	39926000	0	0	0	26648000	21651000	4997000	17016000	9033200	7983000	44750000	17804000	26946000	19597	2249;2364	18571	120528;120529;120530;120531	163246;163247;163248;163249;163250	163250			5	
GLFIIDDKGILR	1	Acetyl (K)	1400.8028	0.80275075	2249;2364	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		90.213	80.313	2	2.5066E-19	44866	160513_QHF_FH_JSI11Kac_6	158.79	115.28			0.29998	0.29294	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29998	0.29294	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92516000	65340000	27176000	0	0	0	0	0	0	92516000	65340000	27176000	0	0	0	19598	2249;2364	18571	120532;120533	163251;163252;163253	163252	2347		3	
GLFIIDGK	1	Unmodified	861.496	0.49600404	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	6.37	4	7	2			3	3	5	2	5	5	7	9	66.459	61.057	1;2	9.692E-11	33731	160513_QHF_FH_JSI11Kac_5	154.35	98.674			1.0244	1.0407	35.737	24	2	Median	1.1691	0.96678	6.0965	5	0	Median	0.84235	0.95861	14.268	5	0	Median	1.0213	1.0204	8.4104	5	0	Median	0.99193	1.0954	55.673	9	2	Median	16270000000	7989200000	8281300000	3321900000	1543700000	1778200000	4058800000	2204800000	1854000000	5379300000	2577900000	2801400000	3510400000	1662800000	1847700000	19599	1390	18572	120534;120535;120536;120537;120538;120539;120540;120541;120542;120543;120544;120545;120546;120547;120548;120549;120550;120551;120552;120553;120554;120555;120556;120557;120558;120559	163254;163255;163256;163257;163258;163259;163260;163261;163262;163263;163264;163265;163266;163267;163268;163269;163270;163271;163272;163273;163274;163275;163276;163277;163278;163279;163280;163281;163282;163283;163284;163285;163286;163287;163288;163289;163290;163291;163292;163293;163294;163295;163296;163297;163298;163299;163300;163301;163302;163303;163304;163305	163293			51	
GLFIIDPNGVIK	1	Unmodified	1284.7442	0.74417324	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.63	4	4	4				3	4	5	5	7	6	6	90.08	85.179	2	4.7374E-17	79602	160511_QHF_FH_JSI12i_2	168.8	154.13			1.0126	0.98439	9.7359	24	4	Median	1.1016	0.90651	5.2975	5	1	Median	0.82083	0.97609	9.8242	7	2	Median	1.025	1.012	8.3648	6	1	Median	1.026	1.0996	8.2797	6	0	Median	8690000000	4251300000	4438600000	1737800000	755460000	982350000	2381800000	1306100000	1075700000	2718900000	1325200000	1393700000	1851400000	864600000	986850000	19600	1338	18573	120560;120561;120562;120563;120564;120565;120566;120567;120568;120569;120570;120571;120572;120573;120574;120575;120576;120577;120578;120579;120580;120581;120582;120583	163306;163307;163308;163309;163310;163311;163312;163313;163314;163315;163316;163317;163318;163319;163320;163321;163322;163323;163324;163325;163326;163327;163328;163329;163330;163331;163332;163333;163334;163335;163336;163337;163338;163339;163340;163341;163342;163343;163344;163345;163346;163347;163348;163349;163350;163351;163352;163353;163354;163355;163356;163357;163358	163314			53	
GLFIIDPNGVIKHLSVNDLPVGR	1	Acetyl (K)	2514.3958	0.39584307	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		96.306	86.907	3	8.1587E-27	49311	160513_QHF_FH_JSI11Kac_6	202.47	156.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283530000	283530000	0	0	0	0	0	0	0	283530000	283530000	0	0	0	0	19601	1338	18574	120584	163359	163359	1266		1	
GLFILGTASHSVDYRK	1	Unmodified	1762.9366	0.93661847	3421	Q8IWF2	FOXRED2	FAD-dependent oxidoreductase domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			66.499	58.472	3	0.0022955	32221	160513_QHF_FH_JSI10Kac_6	62.104	44.598			0.7306	0.86665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7306	0.86665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25206000	16356000	8849300	0	0	0	25206000	16356000	8849300	0	0	0	0	0	0	19602	3421	18575	120585	163360	163360			1	
GLFITIHDR	0	Unmodified	1070.5873	0.58727866	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	4	2	57.78	48.465	2;3	6.1037E-11	26567	160513_QHF_FH_JSI10Kac_6	151.5	102.7			0.92832	1.0234	16.775	8	1	Median	1.0934	0.92632	36.752	2	0	Median	0.85651	1.0122	8.7471	2	0	Median	1.0725	1.0276	17.935	2	1	Median	0.94608	1.0309	8.23	2	0	Median	639770000	322120000	317650000	153000000	70428000	82571000	326300000	172220000	154080000	87648000	40528000	47120000	72829000	38951000	33879000	19603	1616	18576	120586;120587;120588;120589;120590;120591;120592;120593;120594;120595	163361;163362;163363;163364;163365;163366;163367;163368;163369;163370;163371;163372;163373;163374;163375;163376	163376			16	
GLFKDFFPETGTK	2	Acetyl (K)	1527.7609	0.76094551	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	86.112	76.732	2	8.4287E-12	42584	160513_QHF_FH_JSI11Kac_6	120.55	64.456			0.7151	0.72185	3.1061	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78424	0.73788	NaN	1	0	Median	0.65205	0.70617	NaN	1	0	Median	54327000	34421000	19906000	0	0	0	0	0	0	28915000	19170000	9745000	25411000	15251000	10161000	19604	5549	18577	120596;120597	163377;163378	163377	3485		2	
GLFLPEDENLREK	1	Unmodified	1558.7991	0.79912193	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							3	5	4	3	56.356	55.591	2;3	3.6478E-06	49125	160511_QHF_FH_JSI11i_3	151.79	127.8			0.97814	0.95831	14.581	13	2	Median	1.059	0.91757	18.573	3	0	Median	0.79633	0.97539	13.41	4	1	Median	1.0456	1.0119	14.04	4	1	Median	0.93166	1.0095	26.09	2	0	Median	2864100000	1455800000	1408200000	324800000	169090000	155710000	554300000	322260000	232040000	1357500000	625560000	731910000	627500000	338920000	288580000	19605	2307	18578	120598;120599;120600;120601;120602;120603;120604;120605;120606;120607;120608;120609;120610;120611;120612	163379;163380;163381;163382;163383;163384;163385;163386;163387;163388;163389;163390;163391;163392;163393;163394;163395;163396;163397;163398;163399;163400;163401;163402;163403;163404;163405;163406;163407;163408	163385			30	
GLFPFTHVK	1	Unmodified	1044.5757	0.57565135	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.35		4	8						3	4	4	4	3	58.792	56.488	2;3	5.1107E-07	46348	160511_QHF_FH_JSI9i_3	127.56	113.41			1.0355	0.97541	5.6028	12	1	Median	1.1339	0.91711	4.324	3	0	Median	0.81286	0.93217	1.4133	2	0	Median	1.0355	0.99904	4.1012	4	1	Median	0.98744	1.0077	4.6758	3	0	Median	2938400000	1422600000	1515900000	664770000	253600000	411160000	559570000	276730000	282830000	722420000	355850000	366560000	991700000	536400000	455300000	19606	1583	18579	120613;120614;120615;120616;120617;120618;120619;120620;120621;120622;120623;120624;120625;120626;120627	163409;163410;163411;163412;163413;163414;163415;163416;163417;163418;163419;163420;163421;163422;163423;163424;163425;163426;163427;163428;163429;163430;163431;163432;163433;163434;163435;163436;163437	163421			28	
GLFQNPAVQFHSK	1	Unmodified	1471.7572	0.75719754	3655	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	53.524	52.682	2;3	1.6671E-08	45091	160511_QHF_FH_JSI12i_3	101.33	91.001			0.80345	0.86213	61.473	8	3	Median	0.53207	0.4394	101.34	2	1	Median	0.4185	0.48409	91.272	2	1	Median	0.95797	0.89816	8.1096	2	0	Median	0.77349	0.79794	13.262	2	1	Median	1154200000	642960000	511230000	432980000	230940000	202040000	302890000	193570000	109310000	246290000	123920000	122370000	172030000	94522000	77504000	19607	3655	18580	120628;120629;120630;120631;120632;120633;120634;120635;120636	163438;163439;163440;163441;163442;163443;163444;163445;163446;163447;163448;163449;163450	163450			13	
GLFQTGQK	1	Unmodified	877.46577	0.46576654	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	22.024	22.02	2	0.00010336	18007	160511_QHF_FH_JSI12i_3	129.4	86.624			1.2787	1.2361	5.6386	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2629	1.1878	NaN	1	1	Median	1.2947	1.2864	NaN	1	0	Median	188380000	88191000	100190000	0	0	0	0	0	0	58110000	19889000	38220000	130270000	68301000	61970000	19608	4388	18581	120637;120638;120639	163451;163452;163453	163453			3	
GLFSANDWQCK	1	Unmodified	1324.587	0.58702067	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								3	2	2	57.123	56.634	2	7.2757E-13	47177	160511_QHF_FH_JSI10i_3	143.03	134.08			1.1005	1.0872	23.371	6	4	Median	NaN	NaN	NaN	0	0	Median	1.051	1.2317	36.538	2	0	Median	1.0266	0.97383	16.822	2	2	Median	1.2039	1.2347	19.228	2	2	Median	501450000	272110000	229340000	0	0	0	58287000	32306000	25981000	167730000	86900000	80831000	275430000	152900000	122530000	19609	657	18582	120640;120641;120642;120643;120644;120645;120646	163454;163455;163456;163457;163458;163459;163460;163461;163462;163463	163456			10	
GLFSFFQGR	0	Unmodified	1057.5345	0.53451481	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				76.186	67.583	2	0.043353	36254	160513_QHF_FH_JSI9Kac_6	43.246	3.7039			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19610	5752	18583	120647	163464	163464			1	
GLFTGLTPR	0	Unmodified	960.53927	0.53926584	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	2	2	1	2	57.139	56.265	2	3.0899E-16	48160	160511_QHF_FH_JSI12i_3	172.14	102.71			0.97154	0.94536	23.016	6	1	Median	1.4303	1.1871	34.193	2	1	Median	0.90741	1.0722	15.808	2	0	Median	0.94579	0.89311	NaN	1	0	Median	0.79829	0.80756	NaN	1	0	Median	1300300000	643190000	657080000	434480000	201410000	233060000	428720000	227230000	201490000	271740000	131640000	140100000	165340000	82909000	82429000	19611	5717	18584	120648;120649;120650;120651;120652;120653;120654	163465;163466;163467;163468;163469;163470;163471;163472;163473;163474;163475;163476;163477	163476			12	
GLFTLFAGHLVK	1	Unmodified	1301.7496	0.74959297	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	3	3	3	3	86.173	82.037	2;3	3.4189E-51	41852	160513_QHF_FH_JSI11Kac_6	215.5	191.83			0.91512	0.91903	10.18	12	1	Median	1.0647	0.90045	5.8677	3	0	Median	0.77803	0.92686	7.891	3	0	Median	1.2381	1.1732	17.48	3	1	Plateau	0.88796	0.94721	4.5487	3	0	Plateau	1637500000	831790000	805750000	542280000	281260000	261020000	548910000	303090000	245820000	363140000	147550000	215590000	183210000	99892000	83319000	19612	4733	18585	120655;120656;120657;120658;120659;120660;120661;120662;120663;120664;120665;120666	163478;163479;163480;163481;163482;163483;163484;163485;163486;163487;163488;163489;163490;163491;163492;163493;163494;163495;163496;163497;163498;163499;163500;163501	163485			23	
GLFVACR	0	Unmodified	821.42179	0.42179324	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			34.014	32.613	2	0.026724	27226	160511_QHF_FH_JSI10i_3	56.51	38.743			1.2526	1.4541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2526	1.4541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42827000	18635000	24192000	0	0	0	42827000	18635000	24192000	0	0	0	0	0	0	19613	1148	18586	120667	163502	163502			1	
GLFYFDNSFRPVPLEQTYVGITEK	1	Unmodified	2819.417	0.41703202	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		92.012	84.055	3	1.3749E-150	48929	160513_QHF_FH_JSI10Kac_6	272.24	244.92			0.7462	0.88066	15.138	3	0	Plateau	1.1277	0.96336	NaN	1	0	Median	0.74099	0.88066	NaN	1	0	Median	1.2529	1.1832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	290960000	148670000	142290000	89758000	48027000	41731000	121230000	65844000	55384000	79977000	34798000	45179000	0	0	0	19614	552	18587	120668;120669;120670	163503;163504;163505;163506;163507;163508	163507			6	
GLFYLVTIK	1	Unmodified	1052.627	0.62701821	5670	Q9Y5N5	N6AMT1	HemK methyltransferase family member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.7	6.13			2						4	2	2	1	1	85.935	80.055	2	7.5193E-05	42114	160513_QHF_FH_JSI11Kac_6	116.73	74.127			0.9613	0.97677	39.651	6	3	Median	0.67869	0.56714	53.902	2	1	Median	0.89238	1.0396	9.9192	2	2	Median	1.028	0.98437	NaN	1	0	Median	1.017	1.0762	NaN	1	0	Median	486830000	244100000	242740000	113050000	53451000	59602000	181660000	102560000	79097000	125440000	60355000	65086000	66681000	27728000	38953000	19615	5670	18588	120671;120672;120673;120674;120675;120676	163509;163510;163511;163512;163513;163514	163511			6	
GLFYSMAK	1	Unmodified	915.45242	0.45242467	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.471	48.231	2	0.002899	41275	160511_QHF_FH_JSI12i_3	75.189	20.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19616	1403	18589	120677	163515	163515			1	
GLGAAEFGGAAGNVEAPGETFAQR	0	Unmodified	2276.0822	0.082173085	3040	Q6EEV4	POLR2M	DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4									2	2	1	70.403	69.62	2;3	3.0266E-15	61094	160511_QHF_FH_JSI11i_2	145.55	126.34			0.86813	1.0813	5.4957	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87672	1.0461	4.6862	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89105	0.96958	NaN	1	0	Median	81563000	42629000	38933000	0	0	0	56558000	30690000	25867000	0	0	0	25005000	11939000	13066000	19617	3040	18590	120678;120679;120680;120681;120682	163516;163517;163518;163519;163520	163519			5	
GLGAEIAK	1	Unmodified	757.4334	0.43340378	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.34	4	3	1				2	3		2	3	3	5	25.932	22.33	2	0.0051794	18458	160511_QHF_FH_JSI12i_2	66.429	31.605			1.001	1.1311	26.331	12	3	Median	1.7732	1.4837	6.3562	2	1	Median	0.77983	1.0546	8.0753	3	1	Plateau	0.78273	0.7634	39.69	3	0	Median	1.1222	1.2171	12.618	4	1	Median	1011600000	563320000	448310000	222680000	93056000	129620000	254030000	171670000	82358000	161160000	101120000	60042000	373760000	197470000	176290000	19618	5233	18591	120683;120684;120685;120686;120687;120688;120689;120690;120691;120692;120693;120694;120695	163521;163522;163523;163524;163525;163526;163527;163528;163529	163522			9	
GLGAFVIDSDHLGHR	0	Unmodified	1592.8059	0.80593865	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							6	4	2	1	57.938	56.796	2;3;4	4.7634E-12	46769	160511_QHF_FH_JSI9i_3	113.47	97.901			1.0164	0.94981	32.368	11	4	Median	1.1794	0.97469	11.909	4	1	Median	0.80076	0.94331	42.364	4	2	Median	0.99659	0.93171	5.1692	2	0	Median	0.47991	0.48172	NaN	1	1	Median	701850000	341630000	360230000	266270000	111920000	154350000	138700000	79220000	59479000	267330000	134170000	133160000	29561000	16325000	13236000	19619	2346	18592	120696;120697;120698;120699;120700;120701;120702;120703;120704;120705;120706;120707;120708	163530;163531;163532;163533;163534;163535;163536;163537;163538;163539;163540;163541;163542;163543;163544;163545;163546;163547;163548;163549;163550;163551;163552;163553;163554;163555	163554			26	
GLGAGAGAGEESPATSLPR	0	Unmodified	1696.838	0.83802663	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	1	2	1							1	1	1	1	63.254	62.673	2	4.9225E-05	40337	160511_QHF_FH_JSI12i_1	78.705	62.612			1.2172	0.92649	12.836	4	0	Linear	1.38	1.1883	NaN	1	0	Median	0.76732	0.92154	NaN	1	0	Median	1.2869	1.1764	NaN	1	0	Median	1.1513	1.2063	NaN	1	0	Median	396130000	187280000	208850000	79749000	31777000	47972000	147920000	80364000	67557000	91508000	42604000	48904000	76950000	32536000	44414000	19620	262	18593	120709;120710;120711;120712	163556;163557;163558;163559	163557			4	
GLGATFILR	0	Unmodified	946.56	0.56000128	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.7	6.13			1						2			2	1	70.255	63.95	2	0.015324	34719	160513_QHF_FH_JSI11Kac_6	51.63	12.794			1.1112	1.2068	28.497	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0543	1.0108	37.612	2	0	Median	1.1112	1.2068	NaN	1	0	Median	54204000	24363000	29841000	0	0	0	0	0	0	38100000	16231000	21869000	16105000	8132200	7972400	19621	1656	18594	120713;120714;120715	163560;163561;163562	163561			2	
GLGATTHPTAAVK	1	Unmodified	1222.667	0.66698555	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	2	3	18.314	17.901	2;3	8.5238E-67	14344	160511_QHF_FH_JSI12i_3	235.01	185.3			0.8353	0.92445	30.371	7	2	Median	NaN	NaN	NaN	0	0	Median	0.60725	0.72225	37.076	2	1	Median	1.2773	1.2035	7.9934	2	0	Median	0.88217	0.92445	22.449	3	1	Plateau	1283900000	628070000	655800000	0	0	0	39047000	23752000	15295000	522700000	248060000	274630000	722130000	356260000	365870000	19622	1785	18595	120716;120717;120718;120719;120720;120721;120722	163563;163564;163565;163566;163567;163568;163569	163568			7	
GLGDCIMK	1	Unmodified	892.41466	0.41465895	4626	Q9H0C2	SLC25A31	ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.34	4	3	2				3			3	2	3	4	44.965	41.561	2	0.0034924	37657	160511_QHF_FH_JSI11i_1	72.138	47.984			1.0566	1.0314	16.412	11	3	Median	1.3089	1.081	21.311	2	0	Median	0.9538	1.1494	15.319	2	1	Median	0.89433	0.88596	18.804	3	0	Plateau	1.0164	1.0874	18.249	4	2	Median	2093000000	1024200000	1068700000	611770000	273970000	337800000	270430000	127260000	143160000	712470000	350740000	361730000	498290000	272260000	226030000	19623	4626	18596	120723;120724;120725;120726;120727;120728;120729;120730;120731;120732;120733;120734	163570;163571;163572;163573;163574;163575;163576;163577;163578;163579;163580;163581;163582;163583;163584	163571			15	
GLGDCLVK	1	Unmodified	860.44259	0.44258826	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			2	2	2	1	38.904	35.487	2	0.00035515	31803	160511_QHF_FH_JSI10i_1	111.01	79.718			1.1582	1.2785	22.126	7	1	Median	1.9555	1.6277	32.603	2	1	Median	1.0335	1.2082	8.0001	2	0	Median	1.1541	1.1326	1.0658	2	0	Median	1.4859	1.5806	NaN	1	0	Median	3716200000	1608300000	2108000000	445300000	169300000	276000000	988700000	436950000	551760000	1363300000	623570000	739750000	918920000	378480000	540450000	19624	1014;826	18597	120735;120736;120737;120738;120739;120740;120741	163585;163586;163587;163588;163589;163590;163591;163592;163593	163590			9	
GLGDRPAPK	1	Unmodified	909.50321	0.50321468	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	3	2		9.5467	9.1362	2;3	1.6612E-05	6750	160511_QHF_FH_JSI9i_3	126.52	76.395			0.87825	0.85358	18.798	6	1	Median	0.9344	0.7644	6.0772	2	0	Median	0.82407	0.94959	5.5437	2	1	Median	0.9761	0.91205	34.155	2	0	Median	NaN	NaN	NaN	0	0	Median	1397600000	755770000	641870000	468530000	244840000	223690000	484120000	273240000	210880000	444980000	237690000	207290000	0	0	0	19625	2957;5035	18598	120742;120743;120744;120745;120746;120747;120748	163594;163595;163596;163597;163598;163599;163600;163601;163602;163603;163604	163604			11	
GLGFSIAGGVGNQHIPGDNSIYVTK	1	Unmodified	2500.271	0.27103649	2330	Q12959	DLG1	Disks large homolog 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	74.746	69.295	3	1.7654E-06	66501	160511_QHF_FH_JSI10i_3	60.278	47.975			0.90062	1.0282	19.232	7	0	Median	1.4583	1.2028	22.187	2	0	Median	0.79389	0.91499	19.753	2	0	Median	0.98565	0.93525	19.978	2	0	Median	0.90062	0.96996	NaN	1	0	Median	390190000	203220000	186970000	57362000	26815000	30547000	158380000	86947000	71438000	111190000	58741000	52445000	63254000	30713000	32541000	19626	2330	18599	120749;120750;120751;120752;120753;120754;120755	163605;163606;163607;163608;163609;163610;163611;163612;163613	163607			9	
GLGGAGGGSSPSK	1	Unmodified	1030.5043	0.5043369	2931	Q5T011	SZT2	Protein SZT2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.6	1.2					2	3	3	1	1		5	3	2	11.77	4.008	2	0.012239	4929	160513_QHF_FH_JSI11Kac_3	48.794	10.002			0.94236	1.044	15.7	10	0	Median	NaN	NaN	NaN	0	0	Median	0.94688	1.1303	14.443	5	0	Median	0.96468	0.89683	12.043	3	0	Median	0.93181	1.0148	0.21884	2	0	Median	627650000	333520000	294140000	0	0	0	441740000	235070000	206670000	96081000	47968000	48113000	89833000	50478000	39355000	19627	2931	18600	120756;120757;120758;120759;120760;120761;120762;120763;120764;120765	163614;163615;163616;163617;163618;163619;163620;163621	163615			8	
GLGGIMVK	1	Unmodified	773.44695	0.44694536	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	40.779	39.7	2	0.0010903	33728	160511_QHF_FH_JSI12i_3	94.163	57.576			1.2649	1.2563	2.8679	3	0	Median	1.5427	1.2563	NaN	1	0	Median	1.0641	1.2154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2649	1.2869	NaN	1	0	Median	617200000	260810000	356390000	122300000	43171000	79125000	127580000	55784000	71800000	0	0	0	367320000	161850000	205470000	19628	606	18601	120766;120767;120768	163622	163622			1	
GLGGLIVVSK	1	Unmodified	941.59097	0.59096706	3220	Q7L266	ASRGL1	Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.128	58.867	2	0.00061411	50629	160511_QHF_FH_JSI12i_3	70.816	26.369			0.71631	0.74732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71631	0.74732	NaN	1	0	Median	14249000	7708600	6540900	0	0	0	0	0	0	0	0	0	14249000	7708600	6540900	19629	3220	18602	120769	163623	163623			1	
GLGHPPSSPLLK	1	Unmodified	1201.6819	0.68190733	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			3							1		1	1	38.723	38.159	3	0.014079	31282	160511_QHF_FH_JSI9i_3	34.386	29.858			0.77904	0.78205	16.322	3	0	Median	0.7391	0.59829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85407	0.80402	NaN	1	0	Median	0.77904	0.78205	NaN	1	0	Median	204400000	125520000	78881000	44273000	25676000	18597000	0	0	0	53945000	31505000	22441000	106190000	68343000	37843000	19630	727	18603	120770;120771;120772	163624;163625	163624			1	
GLGHQDTR	0	Unmodified	882.43078	0.43077802	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		0.63182	0.63182	2	0.027434	301	160511_QHF_FH_JSI11i_3	51.346	29.215			0.82567	0.79336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82567	0.79336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9968000	4425900	5542100	0	0	0	0	0	0	9968000	4425900	5542100	0	0	0	19631	3441	18604	120773	163626	163626			1	
GLGHQVATDALVAMEK	1	Oxidation (M)	1654.8349	0.83485551	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		40.458	40.458	3	0.00014737	35546	160511_QHF_FH_JSI11i_3	66.965	54.989			0.93376	0.879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93376	0.879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41536000	22290000	19247000	0	0	0	0	0	0	41536000	22290000	19247000	0	0	0	19632	5596	18605	120774	163627;163628	163628		2704	2	
GLGHQVATDALVAMEK	1	Unmodified	1638.8399	0.83994089	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							1	5	4	2	59.361	58.677	2;3	5.9004E-22	50287	160511_QHF_FH_JSI12i_3	178.84	162.46			1.16	1.1723	38.263	12	3	Median	1.339	1.1397	NaN	1	0	Median	1.0579	1.2232	54.144	5	2	Median	1.2697	1.1965	25.339	4	1	Median	0.94943	0.96248	6.9289	2	0	Median	4220000000	1950700000	2269300000	197140000	83279000	113860000	749200000	370930000	378280000	1291600000	571260000	720320000	1982100000	925250000	1056800000	19633	5596	18605	120775;120776;120777;120778;120779;120780;120781;120782;120783;120784;120785;120786	163629;163630;163631;163632;163633;163634;163635;163636;163637;163638;163639;163640;163641;163642;163643;163644;163645;163646;163647;163648;163649	163645			21	
GLGHTGGTLDK	1	Unmodified	1054.5407	0.5407224	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	11.128	10.88	2;3	2.7443E-23	8582	160511_QHF_FH_JSI11i_3	177.06	132.62			1.0935	1.1193	40.987	4	2	Linear	0.46404	0.40412	NaN	1	1	Median	0.55315	0.67487	NaN	1	1	Median	0.8998	0.84575	NaN	1	0	Median	1.0546	1.0509	NaN	1	0	Median	308170000	165610000	142550000	33701000	21934000	11767000	43670000	25928000	17742000	74534000	42407000	32128000	156260000	75346000	80918000	19634	1167	18606	120787;120788;120789;120790;120791;120792	163650;163651;163652;163653;163654;163655;163656;163657	163651			8	
GLGILSLK	1	Unmodified	799.51674	0.51673948	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	2	3	3	67.944	64.829	2	0.00011034	56100	160511_QHF_FH_JSI12i_3	128.57	20.328			0.9461	0.96923	10.126	11	0	Median	1.1882	1.0125	9.847	3	0	Median	0.79793	0.94924	2.9476	2	0	Median	1.0724	1.0311	15.732	3	0	Median	0.90048	0.95844	10.8	3	0	Median	2177700000	1074500000	1103100000	486370000	201940000	284430000	408150000	227860000	180290000	528050000	254310000	273740000	755110000	390420000	364690000	19635	3860	18607	120793;120794;120795;120796;120797;120798;120799;120800;120801;120802;120803	163658;163659;163660;163661;163662;163663;163664;163665;163666;163667;163668;163669;163670;163671;163672;163673;163674;163675;163676;163677;163678;163679;163680;163681;163682;163683;163684	163682			27	
GLGKGGAK	2	Acetyl (K)	728.41809	0.41808807	2019;4278	P62805;Q99525	HIST1H4A;HIST1H4G	Histone H4;Histone H4-like protein type G	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	0.954					1	3	4	4		1	4	3	4	12.103	3.7204	2	0.0003981	4970	160513_QHF_FH_JSI12Kac_3	117.16	36.931			0.84402	0.87807	11.427	11	0	Median	1.0808	0.90855	NaN	1	0	Median	0.81394	0.91473	11.237	4	0	Median	0.85963	0.85322	2.3593	2	0	Median	0.80033	0.87139	15.319	4	0	Median	2056200000	1098700000	957440000	49566000	25258000	24308000	724460000	368080000	356380000	444510000	212030000	232490000	837630000	493370000	344260000	19636	2019;4278	18608	120804;120805;120806;120807;120808;120809;120810;120811;120812;120813;120814;120815	163685;163686;163687;163688;163689;163690;163691;163692;163693;163694;163695;163696;163697;163698;163699;163700;163701;163702;163703;163704	163695	2054;2055;3102		20	
GLGKGGAKR	2	2 Acetyl (K)	926.52976	0.52976379	2019	P62805	HIST1H4A	Histone H4	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	1.44					5	4	4	4	4	4	6	5	6	21.433	12.748	2	3.4254E-31	7789	160513_QHF_FH_JSI12Kac_5	188.76	83.625			1.3989	1.4329	209.42	17	2	Median	1.3754	1.3269	13.12	4	0	Median	1.5668	1.4218	12.828	5	0	Linear	1.2384	1.153	352.91	5	2	Median	0.92038	0.98369	6.5353	3	0	Median	26719000000	11879000000	14840000000	10053000000	4228800000	5824200000	9635100000	3804600000	5830500000	3103200000	89806000	3013400000	3927600000	3755400000	172190000	19637	2019	18609	120816;120817;120818;120819;120820;120821;120822;120823;120824;120825;120826;120827;120828;120829;120830;120831;120832;120833;120834;120835;120836	163705;163706;163707;163708;163709;163710;163711;163712;163713;163714;163715;163716;163717;163718;163719;163720;163721;163722;163723;163724;163725;163726;163727;163728;163729;163730;163731;163732;163733;163734;163735	163727	2054;2055		31	
GLGKPGGQGDAIQLSPK	2	Unmodified	1621.8788	0.87876924	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		39.672	38.666	3	1.4169E-05	32393	160511_QHF_FH_JSI10i_3	89.311	77.335			0.91532	1.056	14.619	3	0	Median	1.3044	1.0754	NaN	1	0	Median	0.91532	1.056	NaN	1	0	Median	0.87769	0.8277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168980000	78496000	90485000	40643000	17502000	23142000	68464000	33668000	34796000	59874000	27327000	32547000	0	0	0	19638	2989	18610	120837;120838;120839	163736;163737;163738	163737			3	
GLGLDDALEPR	0	Unmodified	1154.5932	0.5931519	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		58.797	58.358	2	8.1053E-05	52952	160511_QHF_FH_JSI11i_1	163.64	136.38			1.3022	1.4299	5.8923	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2896	1.5025	NaN	1	1	Median	1.3855	1.3822	4.7978	2	1	Median	NaN	NaN	NaN	0	0	Median	969090000	383260000	585830000	0	0	0	379830000	160650000	219180000	589250000	222610000	366650000	0	0	0	19639	5487	18611	120840;120841;120842	163739;163740;163741	163739			3	
GLGLDESGLAK	1	Unmodified	1058.5608	0.56078914	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.31	4	1				1	4			1	3	2	4	51.642	46.561	2	1.8391E-18	42201	160511_QHF_FH_JSI10i_1	166.07	108.21			0.90629	0.88884	19.391	9	1	Median	1.0607	0.8875	NaN	1	0	Median	0.74698	0.88884	21.57	3	1	Plateau	0.90345	0.88849	1.3506	2	0	Median	0.9539	1.0427	21.507	3	0	Plateau	1694500000	873340000	821150000	348660000	197950000	150710000	432220000	228700000	203520000	448020000	217980000	230030000	465590000	228700000	236890000	19640	5496	18612	120843;120844;120845;120846;120847;120848;120849;120850;120851;120852	163742;163743;163744;163745;163746;163747;163748;163749;163750;163751;163752;163753;163754;163755;163756;163757;163758;163759;163760;163761;163762;163763	163754			22	
GLGLGANLTEAQALTPTGPSR	0	Unmodified	2023.0698	0.069817485	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							2	3	2		77.189	76.329	2;3	4.3109E-70	63869	160511_QHF_FH_JSI10i_3	225.55	212.35			1.3716	1.2381	20.99	5	4	Median	1.6019	1.3765	14.984	2	2	Median	0.80588	0.94837	0.19763	2	1	Median	1.3716	1.3102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76799000	30755000	46044000	26458000	8618200	17839000	32039000	14253000	17786000	18302000	7884300	10418000	0	0	0	19641	3906	18613	120853;120854;120855;120856;120857;120858;120859	163764;163765;163766;163767;163768;163769;163770;163771;163772	163767			9	
GLGLGIVAGSLLVK	1	Unmodified	1295.8177	0.81767253	508	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			16						4	6	5	4	5	97.582	95.359	2;3	2.8553E-52	83124	160511_QHF_FH_JSI10i_3	190.86	183.64			0.91221	0.82	14.313	11	11	Median	0.98046	0.81391	3.0429	3	3	Plateau	0.77021	0.89999	27.147	3	3	Median	0.98081	0.91836	12.68	3	3	Plateau	0.81017	0.81548	0.78113	2	2	Median	1464700000	775560000	689190000	441180000	226610000	214570000	415670000	233850000	181830000	296900000	153140000	143750000	310990000	161950000	149040000	19642	508	18614	120860;120861;120862;120863;120864;120865;120866;120867;120868;120869;120870;120871;120872;120873;120874;120875;120876;120877;120878;120879	163773;163774;163775;163776;163777;163778;163779;163780;163781;163782;163783;163784;163785;163786;163787;163788;163789;163790;163791;163792;163793	163778			21	
GLGLKPEK	2	Unmodified	840.5069	0.50690308	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	16.178	15.72	2;3	0.0089422	12230	160511_QHF_FH_JSI12i_3	45.161	17.907			0.91208	1.0669	29.418	9	2	Median	1.4728	1.1869	12.357	2	0	Median	0.89609	1.0683	0.18621	2	0	Median	2.0433	1.925	48.121	3	2	Plateau	0.78103	0.79879	0.71359	2	0	Median	2075700000	896130000	1179600000	241780000	95004000	146780000	302790000	147610000	155180000	749550000	269900000	479650000	781630000	383620000	398010000	19643	3649	18615	120880;120881;120882;120883;120884;120885;120886;120887;120888	163794;163795;163796;163797;163798;163799;163800;163801;163802;163803;163804	163803			11	
GLGLKPEK	2	Acetyl (K)	882.51747	0.51746776	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		42.935	32.799	2	0.035615	19751	160513_QHF_FH_JSI11Kac_4	60.436	27.596			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1914200	1914200	0	0	0	0	0	0	0	1914200	1914200	0	0	0	0	19644	3649	18615	120889	163805	163805			1	
GLGLSIVGK	1	Unmodified	842.52255	0.52255314	593	O75970	MPDZ	Multiple PDZ domain protein	no	no	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	56.338	55.503	2	7.5297E-05	47565	160511_QHF_FH_JSI12i_3	95.909	51.217			1.115	1.117	7.5765	4	0	Linear	1.1904	0.98188	NaN	1	0	Median	0.82916	0.92874	NaN	1	0	Median	1.1478	1.0411	NaN	1	0	Median	1.0831	1.1075	NaN	1	0	Median	163470000	82688000	80780000	32247000	16402000	15845000	22095000	11718000	10377000	39578000	21423000	18155000	69548000	33145000	36403000	19645	593	18616	120890;120891;120892;120893	163806;163807	163807			2	
GLGLSKAYVGQK	2	Acetyl (K)	1261.703	0.7030367	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.759							4	5	3	2	3	3	4	62.143	51.728	2	3.1897E-15	26937	160513_QHF_FH_JSI12Kac_6	133.81	100.58			0.72687	0.82172	27.365	8	0	Median	1.0018	0.8474	30.849	2	0	Median	0.69922	0.82598	0.99077	2	0	Median	0.60023	0.58757	8.6204	2	0	Median	0.94313	1.0271	31.292	2	0	Median	75674000	40367000	35307000	12274000	5192000	7082200	17257000	9923100	7334200	28700000	18657000	10043000	17442000	6594100	10848000	19646	1192	18617	120894;120895;120896;120897;120898;120899;120900;120901;120902;120903;120904;120905	163808;163809;163810;163811;163812;163813;163814;163815;163816;163817;163818;163819;163820;163821;163822;163823;163824	163823	1054		17	
GLGMTLSYLFR	0	Unmodified	1256.6587	0.65872905	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	89.11	80.594	2	1.9621E-105	44556	160513_QHF_FH_JSI9Kac_6	268.72	238.03			0.79546	0.90927	14.274	5	1	Median	1.2035	1.0535	NaN	1	0	Median	0.7692	0.90927	NaN	1	0	Median	1.0665	1.0056	NaN	1	0	Median	0.74242	0.78632	8.8615	2	1	Median	1457300000	755680000	701580000	335670000	154520000	181150000	812330000	435770000	376560000	152800000	76473000	76331000	156450000	88919000	67531000	19647	108	18618	120906;120907;120908;120909;120910	163825;163826;163827;163828;163829;163830;163831	163828			7	
GLGMTLSYLFR	0	Oxidation (M)	1272.6536	0.65364367	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	83.97	76.453	2	0.00029553	42955	160513_QHF_FH_JSI10Kac_6	88.267	75.979			0.94876	1.0666	7.2339	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8597	1.0134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.047	1.1226	NaN	1	0	Median	460740000	258340000	202410000	0	0	0	366520000	212680000	153840000	0	0	0	94223000	45659000	48564000	19648	108	18618	120911;120912	163832;163833	163833		46	2	
GLGMTLSYLFREPATINYPFEK	1	Unmodified	2546.2879	0.28793211	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.02	87.3	3	2.822E-106	50025	160513_QHF_FH_JSI10Kac_6	234.98	208.56			0.99129	1.1824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99129	1.1824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156820000	81710000	75111000	0	0	0	156820000	81710000	75111000	0	0	0	0	0	0	19649	108	18619	120913	163834;163835	163834			2	
GLGNQVEVLK	1	Unmodified	1055.5975	0.597509	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			41.986	41.178	2	0.00094087	36966	160511_QHF_FH_JSI10i_1	81.263	43.103			0.85771	0.83025	16.422	2	1	Median	0.91919	0.73923	NaN	1	0	Median	0.80034	0.93248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70875000	39105000	31770000	19774000	11578000	8196200	51101000	27527000	23574000	0	0	0	0	0	0	19650	5202	18620	120914;120915	163836;163837	163836			1	
GLGPLAEAAAAGDGAAAAGAAR	0	Unmodified	1807.9177	0.91767394	381	O43815	STRN	Striatin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		63.888	63.888	3	3.4996E-06	56891	160511_QHF_FH_JSI11i_3	59.857	50.81			1.6478	1.5819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6478	1.5819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54678000	11820000	42858000	0	0	0	0	0	0	54678000	11820000	42858000	0	0	0	19651	381	18621	120916	163838	163838			1	
GLGPLFK	1	Unmodified	730.43776	0.43776088	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	53.789	52.886	2	0.005487	46616	160511_QHF_FH_JSI11i_3	94.669	68.56			0.98857	1.0776	8.0658	8	0	Median	1.3101	1.0776	0.64989	2	0	Median	0.95503	1.1335	4.2653	2	0	Median	1.0252	1.0068	12.678	2	0	Median	0.9124	0.97635	2.2698	2	0	Median	2075400000	1019000000	1056400000	341030000	143040000	197990000	387510000	209500000	178010000	560320000	277900000	282430000	786590000	388580000	398010000	19652	5708	18622	120917;120918;120919;120920;120921;120922;120923;120924	163839;163840;163841;163842;163843;163844;163845;163846;163847;163848;163849;163850;163851;163852;163853;163854;163855;163856;163857;163858;163859;163860	163841			22	
GLGPSPAGDGPSGSGK	1	Unmodified	1339.6368	0.63680763	3910	Q92934	BAD	Bcl2-associated agonist of cell death	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.792	20.609	2	0.001114	17489	160511_QHF_FH_JSI9i_1	60.161	41.416			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19653	3910	18623	120925	163861	163861			1	
GLGQSKNLTGVYR	1	Acetyl (K)	1433.7627	0.76267685	5630	Q9Y4H2	IRS2	Insulin receptor substrate 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		57.62	46.754	2	0.0034703	25674	160513_QHF_FH_JSI11Kac_5	74.944	57.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1495200	1495200	0	0	0	0	0	0	0	1495200	1495200	0	0	0	0	19654	5630	18624	120926	163862	163862	3506		1	
GLGSTVQEIDLTGVK	1	Unmodified	1515.8144	0.81443765	4008	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	2	1	1	67.828	67.243	2	1.9807E-16	59595	160511_QHF_FH_JSI10i_2	118.87	103.49			0.73051	0.70892	15.616	4	0	Median	0.81729	0.68621	NaN	1	0	Median	0.44973	0.52914	NaN	1	0	Median	0.75881	0.73723	NaN	1	0	Median	0.70326	0.73238	NaN	1	0	Median	316960000	185850000	131110000	63988000	29905000	34083000	73116000	50198000	22918000	89867000	55661000	34206000	89988000	50083000	39906000	19655	4008	18625	120927;120928;120929;120930;120931	163863;163864;163865;163866	163866			1	
GLGTDDNTLIR	0	Unmodified	1173.599	0.59896556	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			2	2	2	2	44.628	40.258	2	3.5329E-07	36554	160511_QHF_FH_JSI11i_1	140.45	89.48			0.95265	1.0201	22.114	8	4	Median	1.1471	0.96122	22.209	2	2	Median	0.69733	0.84171	28.401	2	1	Median	1.2263	1.1983	23.974	2	1	Median	0.87224	0.93357	14.982	2	0	Median	2767700000	1325800000	1441900000	605280000	283240000	322050000	689120000	375390000	313730000	847310000	355780000	491530000	625990000	311340000	314640000	19656	932	18626	120932;120933;120934;120935;120936;120937;120938;120939	163867;163868;163869;163870;163871;163872;163873;163874;163875;163876	163867			9	
GLGTDEDAIISVLAYR	0	Unmodified	1691.873	0.87301516	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	4	2	100.21	100.08	2;3	1.5175E-97	87879	160511_QHF_FH_JSI9i_2	256.47	222.58			1.062	1.0843	10.251	10	1	Median	1.1614	0.98536	13.95	2	0	Median	0.78233	0.95964	6.7762	2	0	Median	1.1106	1.0901	8.5275	4	1	Median	1.0717	1.169	0.47093	2	0	Median	618830000	313810000	305020000	108260000	52014000	56245000	149150000	82148000	67003000	214320000	107010000	107310000	147100000	72638000	74463000	19657	932	18627	120940;120941;120942;120943;120944;120945;120946;120947;120948;120949;120950	163877;163878;163879;163880;163881;163882;163883;163884;163885;163886;163887;163888;163889;163890	163882			13	
GLGTDEDSLIEIICSR	0	Unmodified	1776.8564	0.85637882	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.735	7	11	6							2	5	9	8	96.666	96.509	2;3	8.4823E-235	84831	160511_QHF_FH_JSI11i_2	406.28	372.32			1.0379	1.0343	20.073	20	3	Median	1.1792	1.0091	11.321	2	0	Median	0.85248	1.0123	2.3812	4	0	Median	0.91745	0.89876	9.1417	8	3	Median	1.3448	1.4412	6.0373	6	0	Median	1710700000	831500000	879190000	134000000	58181000	75823000	397830000	207450000	190380000	599420000	297500000	301920000	579430000	268370000	311060000	19658	870	18628	120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961;120962;120963;120964;120965;120966;120967;120968;120969;120970;120971;120972;120973;120974	163891;163892;163893;163894;163895;163896;163897;163898;163899;163900;163901;163902;163903;163904;163905;163906;163907;163908;163909;163910;163911;163912;163913;163914;163915;163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926;163927;163928;163929;163930;163931;163932;163933;163934;163935;163936;163937;163938;163939;163940;163941;163942;163943;163944;163945;163946;163947;163948;163949;163950	163936			60	
GLGTDEDTIIDIITHR	0	Unmodified	1767.9003	0.90029254	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		16	21							3	8	16	10	97.51	97.458	3	1.0848E-56	83459	160511_QHF_FH_JSI12i_3	166.9	148.49			1.0456	1.08	28.049	26	9	Median	1.6916	1.488	NaN	1	0	Median	0.78934	0.96862	40.891	6	4	Median	1.196	1.1313	14.647	11	3	Median	0.93351	0.94519	27.598	8	2	Median	877940000	432700000	445250000	13069000	3672100	9397000	84478000	46589000	37888000	406090000	196450000	209640000	374310000	185980000	188330000	19659	891	18629	120975;120976;120977;120978;120979;120980;120981;120982;120983;120984;120985;120986;120987;120988;120989;120990;120991;120992;120993;120994;120995;120996;120997;120998;120999;121000;121001;121002;121003;121004;121005;121006;121007;121008;121009;121010;121011	163951;163952;163953;163954;163955;163956;163957;163958;163959;163960;163961;163962;163963;163964;163965;163966;163967;163968;163969;163970;163971;163972;163973;163974;163975;163976;163977;163978;163979;163980;163981;163982;163983;163984;163985;163986;163987;163988;163989;163990;163991;163992;163993;163994;163995;163996	163994			44	
GLGTDEDTLIEILASR	0	Unmodified	1701.8785	0.87849447	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.696	5	8	3							2	4	5	5	101.43	101.35	2;3	0	92052	160511_QHF_FH_JSI11i_1	389.49	346.19			0.90379	0.98099	20.456	16	4	Median	1.1989	1.0044	3.277	2	1	Median	0.66824	0.81379	20.254	4	2	Median	0.81176	0.78788	25.396	5	0	Median	1.0105	1.0632	13.85	5	1	Median	7703200000	3912200000	3791000000	946380000	416590000	529780000	1605000000	927740000	677250000	2030100000	1035900000	994160000	3121800000	1532000000	1589800000	19660	805	18630	121012;121013;121014;121015;121016;121017;121018;121019;121020;121021;121022;121023;121024;121025;121026;121027	163997;163998;163999;164000;164001;164002;164003;164004;164005;164006;164007;164008;164009;164010;164011;164012;164013;164014;164015;164016;164017	163998			21	
GLGTDEESILTLLTSR	0	Unmodified	1703.8941	0.89414453	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.44		5	3						4	4	2	3	3	99.074	96.227	2;3	4.965E-209	88315	160511_QHF_FH_JSI12i_3	397.27	371.83			1.0868	1.1097	14.18	12	1	Median	1.0934	0.91685	13.581	4	1	Median	0.95901	1.1475	20.571	2	0	Median	1.1499	1.109	9.9978	3	0	Median	1.061	1.1181	1.8526	3	0	Plateau	10770000000	5384700000	5385200000	2731600000	1251000000	1480600000	1889500000	1032100000	857450000	2262000000	1135200000	1126800000	3886900000	1966500000	1920400000	19661	916	18631	121028;121029;121030;121031;121032;121033;121034;121035;121036;121037;121038;121039	164018;164019;164020;164021;164022;164023;164024;164025;164026;164027	164024			10	
GLGTGTLYIAESR	0	Unmodified	1336.6987	0.69867961	1816	P54105	CLNS1A	Methylosome subunit pICln	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.8		7	4						1	2	5	3	2	56.709	55.218	2	3.0401E-53	47329	160511_QHF_FH_JSI12i_3	222.18	181.83			0.91254	0.96777	9.7816	12	10	Median	1.2282	1.0454	2.6084	2	2	Median	0.75122	0.93545	12.516	5	5	Median	1.0542	0.9758	3.2539	3	2	Plateau	0.86271	0.92388	14.53	2	1	Median	4253700000	2174500000	2079200000	743490000	322660000	420830000	1006200000	576750000	429500000	1443600000	733660000	709890000	1060400000	541440000	518970000	19662	1816	18632	121040;121041;121042;121043;121044;121045;121046;121047;121048;121049;121050;121051	164028;164029;164030;164031;164032;164033;164034;164035;164036;164037;164038;164039;164040;164041;164042	164040			15	
GLGTSTSK	1	Unmodified	749.39193	0.3919329	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3.8	5.11	3	1					1				1	3	1	6.1309	4.0569	2	0.0055585	3596	160511_QHF_FH_JSI11i_2	62.464	39.428			0.81774	0.89072	32.286	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.65634	0.76985	NaN	1	0	Median	1.3958	1.3701	21.146	2	0	Median	0.83979	0.88149	NaN	1	0	Median	421260000	211930000	209340000	0	0	0	146710000	89755000	56953000	128490000	61989000	66502000	146060000	60181000	85883000	19663	999	18633	121052;121053;121054;121055;121056	164043;164044;164045;164046;164047	164047			5	
GLGVDSVDK	1	Unmodified	888.45526	0.45526144	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	29.108	25.263	2	0.00046292	21866	160511_QHF_FH_JSI9i_1	90.135	48.708			0.98259	0.97581	25.542	5	3	Median	0.98259	0.80683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81853	0.79599	28.804	2	1	Median	1.0808	1.1414	16.09	2	1	Median	354810000	188440000	166370000	100550000	48251000	52301000	0	0	0	135820000	87532000	48292000	118430000	52654000	65780000	19664	3947	18634	121057;121058;121059;121060;121061	164048;164049;164050;164051;164052;164053	164052			6	
GLGVEIAK	1	Unmodified	785.4647	0.46470391	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.79	4	4	4				2	3		3	4	5	5	39.217	35.665	2	0.00063796	30445	160511_QHF_FH_JSI12i_2	101.64	56.951			0.91031	0.98545	15.774	17	1	Median	0.8803	0.75747	29.838	3	0	Plateau	0.76656	0.91851	7.6833	4	0	Median	1.0757	1.0667	16.212	5	1	Median	0.91031	0.9811	10.87	5	0	Median	4138900000	2147400000	1991600000	760140000	340440000	419700000	1002400000	555450000	446980000	1360700000	670560000	690180000	1015600000	580900000	434700000	19665	1208	18635	121062;121063;121064;121065;121066;121067;121068;121069;121070;121071;121072;121073;121074;121075;121076;121077;121078	164054;164055;164056;164057;164058;164059;164060;164061;164062;164063;164064;164065;164066;164067;164068;164069;164070;164071;164072;164073;164074;164075;164076;164077;164078;164079;164080;164081;164082	164059			29	
GLGVHHSGILPILK	1	Unmodified	1439.8613	0.86126868	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	3	2	3	60.469	59.571	3;4	2.3094E-05	50534	160511_QHF_FH_JSI10i_3	110.38	102.65			0.91579	0.92942	22.757	11	5	Median	1.3552	1.1282	20.783	3	1	Plateau	0.86969	1.0047	18.473	3	0	Plateau	0.8587	0.80729	46.865	2	2	Median	0.87663	0.88576	20.925	3	2	Median	543950000	241900000	302050000	104570000	41538000	63035000	116700000	54660000	62044000	76612000	35506000	41107000	246060000	110200000	135860000	19666	2677	18636	121079;121080;121081;121082;121083;121084;121085;121086;121087;121088;121089	164083;164084;164085;164086;164087;164088;164089;164090;164091;164092;164093;164094;164095;164096;164097;164098;164099;164100;164101	164088			19	
GLGVHLSFVR	0	Unmodified	1083.6189	0.61891314	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	66.36	57.436	2;3	4.5947E-05	31500	160513_QHF_FH_JSI10Kac_6	91.658	61.915			1.1003	0.9772	9.7027	5	1	Median	1.1003	0.95068	NaN	1	0	Median	0.80843	0.95205	3.6878	2	1	Median	1.1115	1.0783	NaN	1	0	Median	1.1233	1.1699	NaN	1	0	Median	326380000	169920000	156460000	48514000	24091000	24424000	141350000	82842000	58507000	100480000	44673000	55812000	36033000	18316000	17717000	19667	3561	18637	121090;121091;121092;121093;121094	164102;164103;164104;164105	164103			4	
GLGVSALCFK	1	Unmodified	1050.5532	0.55320134	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.059	63.773	2	0.0033855	54946	160511_QHF_FH_JSI12i_3	69.825	60.237			1.7837	1.8469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7837	1.8469	NaN	1	1	Median	25090000	10733000	14356000	0	0	0	0	0	0	0	0	0	25090000	10733000	14356000	19668	4878	18638	121095	164106	164106			1	
GLGWVQFSSEEGLR	0	Unmodified	1563.7682	0.76815616	4606	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	2	3	3	2	79.531	76.586	2	8.7079E-82	70072	160511_QHF_FH_JSI11i_3	252.3	231.43			1.0754	1.094	13.01	10	1	Median	1.3768	1.1525	2.0357	2	0	Median	0.84172	0.98865	24.721	3	1	Plateau	1.2566	1.2169	9.4687	3	0	Plateau	1.0283	1.0657	4.9976	2	0	Median	1712000000	803850000	908100000	230640000	94577000	136070000	472880000	247150000	225740000	653550000	284110000	369430000	354880000	178020000	176870000	19669	4606	18639	121096;121097;121098;121099;121100;121101;121102;121103;121104;121105	164107;164108;164109;164110;164111;164112;164113;164114;164115;164116;164117;164118;164119	164108			13	
GLGYAQYLPK	1	Unmodified	1108.5917	0.59169534	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.347	58.423	2	0.00040184	49989	160511_QHF_FH_JSI12i_2	75.692	68.212			1.9539	1.9067	26.771	4	0	Median	2.0294	1.704	NaN	1	0	Median	1.3368	1.6472	NaN	1	0	Median	2.8979	2.9456	NaN	1	0	Median	1.8811	2.1335	NaN	1	0	Median	269470000	106440000	163030000	61841000	24322000	37519000	71322000	42430000	28892000	84486000	17373000	67113000	51826000	22316000	29510000	19670	5640	18640	121106;121107;121108;121109	164120;164121;164122;164123	164120			3	
GLHEDLQGVPER	0	Unmodified	1348.6735	0.67352749	5274	Q9UEU0	VTI1B	Vesicle transport through interaction with t-SNAREs homolog 1B	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	30.155	30.09	2	0.0014991	25300	160511_QHF_FH_JSI12i_3	64.374	40.031			1.2234	1.2534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2234	1.2534	NaN	1	1	Median	16639000	6864000	9775200	0	0	0	0	0	0	0	0	0	16639000	6864000	9775200	19671	5274	18641	121110;121111	164124;164125	164125			2	
GLHLYGTQGNVGLTNAWSIIQTDFR	0	Unmodified	2760.3984	0.39836227	208	O14817	TSPAN4	Tetraspanin-4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	92.228	86.507	3	8.1588E-43	49443	160513_QHF_FH_JSI10Kac_6	171.78	151.88			0.85863	1.0127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85863	1.0127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	358990000	190330000	168660000	0	0	0	358990000	190330000	168660000	0	0	0	0	0	0	19672	208	18642	121112;121113	164126;164127	164127			2	
GLHNVVYGIQR	0	Unmodified	1254.6833	0.68330431	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.57	6.43			4						3	2	5			42.219	33.602	2;3	5.4256E-06	18674	160513_QHF_FH_JSI10Kac_6	101.64	71.389			1.079	1.2792	4.6829	2	2	Median	NaN	NaN	NaN	0	0	Median	1.079	1.2792	4.6829	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14954000	7766200	7187500	0	0	0	14954000	7766200	7187500	0	0	0	0	0	0	19673	21	18643	121114;121115;121116;121117;121118;121119;121120	164128;164129;164130;164131;164132;164133;164134	164134			7	
GLHQSIEEFR	0	Unmodified	1214.6044	0.60438529	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.74		2	7						3	1	2	7	2	33.014	29.953	2;3	3.3546E-06	24809	160511_QHF_FH_JSI12i_3	82.831	74.526			1.2101	1.3039	22.878	10	3	Median	1.553	1.3378	NaN	1	0	Median	0.97525	1.1576	22.394	2	0	Median	1.2265	1.2708	28.936	5	3	Median	1.2636	1.3286	24.977	2	0	Median	645740000	297900000	347840000	4539900	1639800	2900100	94311000	48579000	45732000	399780000	181790000	217990000	147110000	65889000	81219000	19674	2636	18644	121121;121122;121123;121124;121125;121126;121127;121128;121129;121130;121131;121132	164135;164136;164137;164138;164139;164140;164141;164142;164143	164143			8	
GLHVVEIR	0	Unmodified	921.5396	0.53960019	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	29.161	29.126	3	0.0015211	25226	160511_QHF_FH_JSI11i_3	62.546	51.178			0.89379	0.80489	35.423	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89379	0.80489	NaN	1	0	Median	0.62885	0.64804	46.866	2	0	Median	101250000	64612000	36633000	0	0	0	0	0	0	40085000	24013000	16072000	61160000	40599000	20561000	19675	2108	18645	121133;121134;121135	164144;164145	164144			2	
GLHVVEVTYDDVPIPNSPFK	1	Unmodified	2225.1368	0.13683442	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	3	4	88.272	87.885	2;3;4	2.2309E-14	78268	160511_QHF_FH_JSI11i_3	136.34	127.18			1.0215	0.99279	51.828	7	5	Median	1.172	0.99588	NaN	1	1	Median	0.78423	0.94918	NaN	1	0	Median	0.56722	0.55736	81.644	2	2	Median	1.0215	1.0518	55.986	3	2	Median	717560000	396850000	320710000	51802000	17673000	34129000	49211000	27344000	21867000	227810000	125370000	102440000	388730000	226470000	162270000	19676	512	18646	121136;121137;121138;121139;121140;121141;121142;121143;121144	164146;164147;164148;164149;164150;164151;164152;164153;164154;164155;164156;164157;164158;164159	164146			13	
GLIAAICAGPTALLAHEIGFGSK	1	Unmodified	2266.2144	0.21437323	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	97.815	94.07	3	3.3443E-49	90473	160511_QHF_FH_JSI11i_3	211.03	191.99			0.91371	0.94251	24.491	9	3	Median	1.577	1.3202	22.778	2	0	Median	0.81825	0.96101	18.523	2	0	Median	0.76474	0.72816	13.796	2	0	Median	0.90831	0.92532	9.9424	3	3	Plateau	7913700000	4168900000	3744800000	1038700000	319310000	719430000	2236900000	1291900000	944970000	1939000000	1146900000	792130000	2699100000	1410800000	1288300000	19677	4276	18647	121145;121146;121147;121148;121149;121150;121151;121152;121153	164160;164161;164162;164163;164164;164165;164166;164167;164168;164169;164170;164171;164172;164173	164161			14	
GLIDEITKK	2	Unmodified	1015.5914	0.59136099	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	47.252	47.01	2;3	0.00092319	40050	160511_QHF_FH_JSI12i_3	67.726	49.667			0.53529	0.53615	8.3818	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53529	0.53615	8.3818	2	2	Median	117630000	72931000	44701000	0	0	0	0	0	0	0	0	0	117630000	72931000	44701000	19678	2383	18648	121154;121155	164174;164175	164174			2	
GLIDGVVEADLVEALQEFGPISYVVVMPK	1	Unmodified	3086.625	0.62497589	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS			13.2	5.6		1							4	3	2			104.43	98.439	3;4	2.7182E-49	58342	160513_QHF_FH_JSI10Kac_6	166.79	156.94			0.89761	0.93705	12.677	5	1	Median	1.0593	0.83648	12.086	3	1	Plateau	0.85389	1.0226	5.6288	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	740850000	404150000	336700000	240670000	119310000	121350000	500190000	284840000	215350000	0	0	0	0	0	0	19679	1063	18649	121156;121157;121158;121159;121160	164176;164177;164178;164179;164180;164181;164182;164183	164181			8	
GLIDRDLYR	0	Unmodified	1119.6037	0.60365701	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			40.001	38.5	3	0.031332	31403	160511_QHF_FH_JSI9i_3	30.569	24.608			1.0116	0.98671	7.4128	2	0	Median	1.147	0.93632	NaN	1	0	Median	0.89224	1.0398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93955000	45600000	48354000	56007000	24963000	31044000	37948000	20638000	17310000	0	0	0	0	0	0	19680	1085	18650	121161;121162	164184;164185	164185			2	
GLIDVKPLGVIWGK	2	Unmodified	1493.897	0.89698548	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	93.501	92.89	3	0.00096969	80142	160511_QHF_FH_JSI12i_3	67.275	62.197			0.81109	0.77092	26.18	5	5	Median	0.72568	0.60591	38.752	2	2	Median	0.69043	0.77092	NaN	1	1	Median	0.81109	0.73301	NaN	1	1	Median	0.89617	0.91891	NaN	1	1	Median	160800000	89229000	71569000	33294000	18675000	14619000	21137000	11684000	9452300	40288000	24246000	16042000	66079000	34624000	31456000	19681	3791	18651	121163;121164;121165;121166;121167	164186;164187;164188;164189;164190	164190			5	
GLIDYETFK	1	Unmodified	1084.5441	0.54407645	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14.8	0.433							1	3				2	2	71.682	60.965	2	0.00026463	30293	160513_QHF_FH_JSI12Kac_5	101.64	71.389			0.90679	0.9351	34.831	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72506	0.71085	43.113	2	2	Median	0.95388	1.0366	18.91	2	0	Median	28762000	16008000	12754000	0	0	0	0	0	0	21213000	11789000	9424000	7549700	4219200	3330500	19682	1085	18652	121168;121169;121170;121171	164191;164192;164193;164194	164194			4	
GLIEGSAQYR	0	Unmodified	1092.5564	0.55637247	743	O95905	ECD	Protein SGT1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	28.694	28.247	2	0.0042626	23784	160511_QHF_FH_JSI12i_2	57.859	41.977			1.1032	1.7553	30.98	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.6074	1.945	NaN	1	0	Median	1.0974	1.0885	NaN	1	0	Median	1.7513	1.7553	NaN	1	0	Median	131870000	53558000	78314000	0	0	0	43203000	18156000	25047000	46556000	21251000	25305000	42113000	14151000	27962000	19683	743	18653	121172;121173;121174;121175	164195;164196	164195			1	
GLIENPALLR	0	Unmodified	1094.6448	0.64479354	650	O95168	NDUFB4	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.82	2	4	2					3		1	3	4	3	61.749	60.021	2	4.1039E-14	51465	160511_QHF_FH_JSI12i_2	161.02	117.9			1.1778	1.0328	18.762	9	0	Median	1.1778	1.0229	NaN	1	0	Median	1.0993	1.27	29.239	2	0	Median	1.1136	1.0877	21.17	4	0	Median	1.0807	1.1447	16.532	2	0	Median	844910000	398650000	446270000	134130000	50118000	84016000	172760000	85249000	87510000	313030000	154470000	158560000	224990000	108810000	116180000	19684	650	18654	121176;121177;121178;121179;121180;121181;121182;121183;121184;121185;121186	164197;164198;164199;164200;164201;164202;164203;164204;164205;164206;164207	164199			11	
GLIFYDTK	1	Unmodified	955.50148	0.50148335	5623	Q9Y4D8	HECTD4	Probable E3 ubiquitin-protein ligase HECTD4	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		45.695	36.037	2	0.054574	19570	160513_QHF_FH_JSI11Kac_6	43.066	24.261			0.86489	0.8287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86489	0.8287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27425000	16853000	10572000	0	0	0	0	0	0	27425000	16853000	10572000	0	0	0	19685	5623	18655	121187	164208	164208			1	
GLIHPDDSVK	1	Unmodified	1079.5611	0.56112349	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	22.714	21.986	2;3	3.358E-08	17938	160511_QHF_FH_JSI12i_3	117.89	97.369			1.0205	1.1532	28.046	8	3	Median	0.94395	0.81495	NaN	1	0	Median	1.0144	1.2604	NaN	1	0	Median	1.1463	1.1081	9.5832	2	1	Median	1.1662	1.2311	36.99	4	2	Median	465310000	225260000	240050000	43125000	20261000	22864000	60205000	31618000	28586000	118880000	57424000	61455000	243100000	115960000	127140000	19686	2730	18656	121188;121189;121190;121191;121192;121193;121194;121195;121196	164209;164210;164211;164212;164213;164214;164215;164216;164217	164216			9	
GLIKLVSK	2	Acetyl (K)	898.58515	0.5851534	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.696							4	3	1		2	3	3	64.35	53.697	2	0.0035953	29170	160513_QHF_FH_JSI11Kac_5	90.657	40.616			0.53469	0.56351	67.345	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2585	1.459	20.971	2	0	Median	0.32489	0.30735	20.908	3	0	Plateau	0.63895	0.7075	NaN	1	0	Median	93507000	70272000	23236000	0	0	0	7992000	4302000	3690000	77727000	61778000	15949000	7788400	4191300	3597100	19687	2026	18657	121197;121198;121199;121200;121201;121202;121203;121204	164218;164219;164220;164221;164222;164223	164222	2068		6	
GLILKDHGIR	1	Acetyl (K)	1162.6822	0.68224168	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.144	42.419	3	0.0050534	23012	160513_QHF_FH_JSI11Kac_6	55.401	37.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19688	2636	18658	121205	164224	164224	2600		1	
GLILPVR	0	Unmodified	766.50651	0.50650915	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		53.516	53.036	2	0.0052251	46762	160511_QHF_FH_JSI9i_2	83.229	0			0.98464	0.89875	27.145	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.8438	1.0417	NaN	1	1	Median	1.1978	1.1693	37.213	2	1	Median	NaN	NaN	NaN	0	0	Median	142800000	68664000	74140000	0	0	0	28697000	14336000	14360000	114110000	54328000	59780000	0	0	0	19689	5106	18659	121206;121207;121208;121209	164225;164226;164227;164228	164226			4	
GLIPAGTQHSMIATTGK	1	Unmodified	1681.8821	0.88214006	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.09	3.78		1	9						1	2	4	3	2	48.618	46.882	2;3	4.5558E-16	39900	160511_QHF_FH_JSI12i_3	132.47	126.44			1.0726	1.0761	13.826	11	3	Median	1.5266	1.2815	24.708	2	1	Median	0.96409	1.1026	14.962	4	2	Median	1.1374	1.1205	3.1668	3	0	Median	1.012	1.0143	2.1211	2	0	Median	1602700000	781920000	820760000	145810000	56391000	89414000	567710000	281690000	286020000	323320000	153080000	170250000	565840000	290760000	275080000	19690	5646	18660	121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220	164229;164230;164231;164232;164233;164234;164235;164236;164237;164238;164239;164240;164241;164242;164243;164244;164245;164246	164243			18	
GLIPAGTQHSMIATTGK	1	Oxidation (M)	1697.8771	0.87705468	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	1	0		By MS/MS		By MS/MS	3	0			3								2		1	36.862	36.06	3	0.00064946	30538	160511_QHF_FH_JSI12i_3	54.073	26.975			0.95491	1.0111	0.46957	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86559	1.0077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0534	1.0144	NaN	1	0	Median	54897000	34343000	20554000	0	0	0	10280000	5992200	4287300	0	0	0	44617000	28351000	16266000	19691	5646	18660	121221;121222;121223	164247;164248;164249	164249		2721	3	
GLIPVFALGR	0	Unmodified	1041.6335	0.63350058	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	90.17	89.604	2	0.00045273	73378	160511_QHF_FH_JSI9i_3	74.127	73.126			1.1122	0.92882	2.7399	4	0	Linear	1.1435	0.92507	NaN	1	0	Median	0.85295	0.97133	NaN	1	0	Median	0.97604	0.91095	NaN	1	0	Median	0.89844	0.93258	NaN	1	0	Median	191070000	97774000	93300000	64017000	28860000	35157000	34621000	18560000	16060000	53717000	29100000	24618000	38719000	21254000	17465000	19692	5366	18661	121224;121225;121226;121227	164250;164251;164252	164251			1	
GLIQQFTTITGASESVGK	1	Unmodified	1835.9629	0.9628928	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							4	4	2	2	79.897	79.165	2;3	4.7297E-31	70744	160511_QHF_FH_JSI11i_3	232.25	200.82			0.96681	0.88945	16.569	10	2	Median	1.0597	0.88884	26.738	4	2	Median	0.73776	0.83679	4.3004	2	0	Median	0.99515	0.93734	3.0845	2	0	Median	0.89352	0.90131	11.463	2	0	Median	592990000	299320000	293680000	104660000	54107000	50549000	71740000	40709000	31031000	195110000	91520000	103590000	221480000	112980000	108500000	19693	618	18662	121228;121229;121230;121231;121232;121233;121234;121235;121236;121237;121238;121239	164253;164254;164255;164256;164257;164258;164259;164260;164261;164262;164263;164264;164265;164266;164267;164268;164269;164270;164271;164272	164255			20	
GLIVYQLENQPSEFR	0	Unmodified	1791.9155	0.91554867	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	2	4	3	78.315	74.642	2	7.397E-184	68739	160511_QHF_FH_JSI11i_3	319.46	300.72			1.1326	1.177	11.853	10	1	Median	1.2834	1.1008	21.87	2	0	Median	0.86828	1.0354	13.72	2	0	Median	1.262	1.2018	4.3111	3	0	Median	1.2887	1.3245	8.3783	3	1	Plateau	731920000	335270000	396640000	111660000	44343000	67321000	171710000	90830000	80878000	249110000	111040000	138080000	199430000	89066000	110370000	19694	2092	18663	121240;121241;121242;121243;121244;121245;121246;121247;121248;121249;121250	164273;164274;164275;164276;164277;164278;164279;164280;164281;164282;164283;164284;164285;164286;164287	164274			14	
GLIVYQLENQPSEFRR	0	Unmodified	1948.0167	0.016659702	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.112	66.632	3	1.4635E-06	54655	160511_QHF_FH_JSI9i_3	87.566	67.475			1.3179	1.5094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3179	1.5094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36600000	19273000	17327000	0	0	0	36600000	19273000	17327000	0	0	0	0	0	0	19695	2092	18664	121251;121252	164288;164289	164289			2	
GLKAELMER	1	Acetyl (K)	1087.5696	0.56957969	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	2	1	59.628	49.135	2	1.4779E-05	24936	160513_QHF_FH_JSI10Kac_5	114.5	78.616			0.16627	0.16393	184.99	4	2	Median	NaN	NaN	NaN	0	0	Median	0.010711	0.012642	NaN	1	1	Median	0.16627	0.16393	142.16	2	1	Median	0.60552	0.67619	NaN	1	0	Median	34886000	26428000	8457700	0	0	0	4035600	4016000	19620	24784000	18663000	6121200	6065800	3749000	2316900	19696	2161	18665	121253;121254;121255;121256	164290;164291;164292;164293	164293	2273		4	
GLKAELMER	1	Acetyl (K);Oxidation (M)	1103.5645	0.56449431	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15	0								3				2	1	45.814	35.522	2	0.0033846	19985	160513_QHF_FH_JSI11Kac_5	68.657	52.117			0.47436	0.46964	78.591	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31935	0.31799	55.15	2	1	Median	0.94785	1.0367	NaN	1	0	Median	19347000	14293000	5054200	0	0	0	0	0	0	16818000	13024000	3794100	2529000	1268900	1260100	19697	2161	18665	121257;121258;121259	164294;164295	164294	2273	1808	2	
GLKPNAIYLFLVR	1	Unmodified	1502.8973	0.89731983	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.166	78.54	2	5.4264E-06	43797	160513_QHF_FH_JSI10Kac_6	133.23	103.48			0.64797	0.77772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64797	0.77772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142510000	88125000	54388000	0	0	0	142510000	88125000	54388000	0	0	0	0	0	0	19698	5744	18666	121260	164296	164296			1	
GLKSGENFK	2	Acetyl (K)	1020.524	0.52400971	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	14	0							3				1	1	1	34.856	25.491	2	0.0050342	15364	160513_QHF_FH_JSI12Kac_4	73.985	41.144			0.74409	0.80516	9.7917	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74409	0.89076	NaN	1	0	Median	0.73291	0.73236	NaN	1	0	Median	0.74463	0.80516	NaN	1	0	Median	16885000	9323300	7561400	0	0	0	4349500	2243300	2106300	5190500	3119300	2071200	7344700	3960700	3384000	19699	1041	18667	121261;121262;121263	164297;164298	164298	872		2	
GLKYELISETGGSHDK	2	Acetyl (K)	1774.8737	0.87374344	2325;4243	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	1	0	0	1			By MS/MS		15	0								1				1		66.174	55.259	2	0.0024474	29937	160513_QHF_FH_JSI11Kac_5	113.65	78.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	595400	595400	0	0	0	0	0	0	0	595400	595400	0	0	0	0	19700	2325;4243	18668	121264	164299	164299	2418;2419		1	
GLKYIHSANVLHR	1	Acetyl (K)	1548.8525	0.85249491	1309;1289	P27361;P31152;Q16659;P28482	MAPK3;MAPK4;MAPK6;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6;Mitogen-activated protein kinase 1	no	no	1	0	0	1			By MS/MS		16	0									1			1		51.622	41.901	3	0.0010868	22696	160513_QHF_FH_JSI11Kac_6	71.933	57.369			0.19886	0.19198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19886	0.19198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11012000	9895300	1116200	0	0	0	0	0	0	11012000	9895300	1116200	0	0	0	19701	1289;1309	18669	121265	164300	164300	1217		1	
GLKYLHQEK	2	Acetyl (K)	1156.6241	0.6240581	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		33.924	24.557	2;3	3.4345E-06	13856	160513_QHF_FH_JSI11Kac_6	115.78	58.192			0.17429	0.17053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17429	0.17053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19758000	17851000	1906300	0	0	0	0	0	0	19758000	17851000	1906300	0	0	0	19702	4154	18670	121266;121267	164301;164302	164301	3058		2	
GLKYQEGGVESAFHK	2	Acetyl (K)	1690.8315	0.83148469	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		58.517	48.108	3	0.00036672	25954	160513_QHF_FH_JSI11Kac_6	94.339	82.819			27.136	26.001	187.01	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68321	0.83134	NaN	1	1	Median	7.2891	7.2244	196.93	2	2	Median	NaN	NaN	NaN	0	0	Median	28972000	7561100	21410000	0	0	0	6815200	3358500	3456700	22156000	4202600	17954000	0	0	0	19703	1490	18671	121268;121269;121270	164303;164304;164305	164303	1501;1502		3	
GLLAAAPGLGPR	0	Unmodified	1091.6451	0.64512789	3687	Q8TB03	CXorf38	Uncharacterized protein CXorf38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.611	56.778	2	2.897E-05	47477	160511_QHF_FH_JSI10i_3	107.66	98.451			1.015	1.0227	7.887	4	2	Median	1.3465	1.1116	NaN	1	0	Median	0.91245	1.0175	NaN	1	0	Median	1.128	1.028	NaN	1	1	Median	0.91327	0.91737	NaN	1	1	Median	172640000	83125000	89511000	41184000	17242000	23942000	39604000	22069000	17535000	39314000	19309000	20005000	52535000	24505000	28030000	19704	3687	18672	121271;121272;121273;121274	164306;164307;164308;164309;164310	164307			5	
GLLALLFPLR	0	Unmodified	1111.7118	0.7117509	664	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.062	88.643	2	1.0993E-17	52726	160513_QHF_FH_JSI10Kac_6	170.73	145.8			0.84385	0.88399	11.03	4	0	Median	1.2561	1.0538	NaN	1	0	Median	0.76292	0.88565	NaN	1	0	Median	0.93337	0.88232	NaN	1	0	Median	0.75409	0.81023	NaN	1	0	Median	880850000	443080000	437770000	137770000	60973000	76796000	177390000	85248000	92146000	413460000	207650000	205820000	152230000	89217000	63009000	19705	664	18673	121275;121276;121277;121278	164311;164312;164313;164314;164315;164316;164317	164317			7	
GLLASDLNTDGDMR	0	Unmodified	1476.6879	0.68785692	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.389	53.726	2	0.0048657	48850	160511_QHF_FH_JSI12i_1	54.343	39.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19706	3386	18674	121279	164318	164318			1	
GLLATASEDR	0	Unmodified	1031.5247	0.52473799	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		24.438	24.438	2	0.005827	20818	160511_QHF_FH_JSI11i_3	53.493	19.405			1.7443	1.6619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7443	1.6619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36737000	14528000	22209000	0	0	0	0	0	0	36737000	14528000	22209000	0	0	0	19707	4878	18675	121280	164319	164319			1	
GLLATQMIR	0	Oxidation (M)	1017.5641	0.56410038	5810				yes	yes	0	0	1	0			By MS/MS		3	0			1									1		31.31	31.31	2	0.018618	27189	160511_QHF_FH_JSI11i_3	47.743	12.935	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54321000	18959000	35362000	0	0	0	0	0	0	54321000	18959000	35362000	0	0	0	19708	5810	18676	121281	164320	164320		2755	1	
GLLDDLR	0	Unmodified	800.43922	0.43921744	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		54.718	53.895	2	0.011257	46703	160511_QHF_FH_JSI11i_2	71.296	37.557			0.82744	0.81907	0.9134	3	0	Median	0.92722	0.82078	NaN	1	0	Median	0.66264	0.80714	NaN	1	0	Median	0.82744	0.81907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112490000	68976000	43511000	32764000	20422000	12342000	35740000	24738000	11002000	43984000	23817000	20167000	0	0	0	19709	2252	18677	121282;121283;121284	164321	164321			1	
GLLDDLRNDLDR	0	Unmodified	1413.7212	0.72120596	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							5	4	2	1	79.563	78.74	2;3	1.9115E-10	65994	160511_QHF_FH_JSI10i_3	152.54	111			0.98414	0.95016	10.223	12	0	Median	1.219	1.0007	11.528	5	0	Median	0.81376	0.95016	9.7065	4	0	Median	1.0042	0.92671	0.972	2	0	Median	0.79389	0.82687	NaN	1	0	Median	567110000	260460000	306650000	194800000	86150000	108650000	183430000	83155000	100270000	171240000	81504000	89733000	17646000	9656000	7990000	19710	2252	18678	121285;121286;121287;121288;121289;121290;121291;121292;121293;121294;121295;121296	164322;164323;164324;164325;164326;164327;164328;164329;164330;164331;164332;164333;164334;164335;164336;164337;164338;164339;164340	164330			19	
GLLDLGHAGR	0	Unmodified	1007.5512	0.55122751	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	41.187	40.168	3	0.0032904	33620	160511_QHF_FH_JSI10i_3	43.297	35.925			0.85719	0.96079	10.345	3	1	Plateau	1.2909	1.0478	NaN	1	1	Median	0.85719	0.96079	NaN	1	0	Median	0.9016	0.85273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93679000	48198000	45481000	26359000	11114000	15246000	40245000	21849000	18396000	27075000	15235000	11840000	0	0	0	19711	410	18679	121297;121298;121299;121300;121301	164341;164342;164343;164344;164345;164346	164343			6	
GLLDQNGFTADDINK	1	Unmodified	1619.7791	0.77911477	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	64.239	63.611	2	7.9767E-40	56407	160511_QHF_FH_JSI9i_1	200.82	179.18			0.83833	0.89048	14.757	5	2	Median	0.85872	0.70693	NaN	1	0	Median	0.78644	0.94037	NaN	1	0	Median	0.81534	0.77122	NaN	1	0	Median	0.90532	0.951	9.2998	2	2	Median	422320000	221980000	200340000	84810000	45496000	39315000	82291000	45103000	37188000	71983000	35377000	36606000	183240000	96009000	87231000	19712	2291	18680	121302;121303;121304;121305;121306	164347;164348;164349;164350;164351;164352;164353;164354	164353			8	
GLLDVLPK	1	Unmodified	853.5273	0.52730417	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.436	71.558	2	0.00060564	63537	160511_QHF_FH_JSI10i_2	102.71	70.243			0.85994	0.97462	15.549	4	1	Median	1.3026	1.1453	NaN	1	0	Median	0.78631	0.97406	NaN	1	0	Median	0.94046	0.97518	NaN	1	0	Median	0.72982	0.78414	NaN	1	1	Median	121350000	64620000	56734000	16980000	7852300	9128100	28284000	15934000	12350000	35914000	17321000	18593000	40176000	23513000	16663000	19713	641	18681	121307;121308;121309;121310	164355;164356;164357;164358;164359;164360;164361;164362	164361			8	
GLLEESSFATLFPK	1	Unmodified	1537.8028	0.80281033	2449	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	99.169	99.018	2	3.7262E-17	85622	160511_QHF_FH_JSI12i_3	134.13	117.46			0.92739	0.8721	11.725	4	3	Median	1.0218	0.87366	NaN	1	1	Median	0.69978	0.87053	NaN	1	1	Median	0.87516	0.86891	NaN	1	1	Median	0.98275	1.1012	NaN	1	0	Median	104020000	57685000	46336000	23577000	12162000	11414000	22045000	12562000	9483300	29183000	16470000	12713000	29216000	16491000	12725000	19714	2449	18682	121311;121312;121313;121314;121315;121316	164363;164364;164365;164366;164367;164368;164369	164369			7	
GLLEFEHQR	0	Unmodified	1127.5724	0.57235688	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.42		8	9						9	6	6	8	6	40.023	36.506	2;3	6.7629E-67	30778	160511_QHF_FH_JSI12i_3	244.6	188.59			1.005	1.0235	14.454	25	4	Median	1.22	1.0451	9.0539	6	0	Median	0.85012	0.99849	15.06	6	0	Median	1.1474	1.054	9.3523	7	4	Median	0.97012	1.0186	21.736	6	0	Median	8497600000	4092900000	4404600000	765310000	334680000	430630000	1792800000	928550000	864230000	3281800000	1433300000	1848400000	2657700000	1396400000	1261300000	19715	2569	18683	121317;121318;121319;121320;121321;121322;121323;121324;121325;121326;121327;121328;121329;121330;121331;121332;121333;121334;121335;121336;121337;121338;121339;121340;121341;121342	164370;164371;164372;164373;164374;164375;164376;164377;164378;164379;164380;164381;164382;164383;164384;164385;164386;164387;164388;164389;164390;164391;164392;164393;164394;164395;164396;164397;164398;164399;164400;164401;164402;164403;164404;164405;164406;164407;164408;164409;164410;164411	164404			41	
GLLELVDGTQFTLVK	1	Unmodified	1631.9134	0.91342341	5776				yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.56	102.56	2	0.0076858	89337	160511_QHF_FH_JSI12i_3	49.5	6.2186	+		1.2735	1.1885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2735	1.1885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67064000	31855000	35209000	0	0	0	0	0	0	67064000	31855000	35209000	0	0	0	19716	5776	18684	121343;121344	164412;164413;164414	164414			3	
GLLEMMETDEK	1	Unmodified	1294.5785	0.5784894	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.838	64.548	2	3.0952E-05	55746	160511_QHF_FH_JSI12i_3	101.38	83.561			0.7876	0.79833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7876	0.79833	NaN	1	0	Median	34550000	11475000	23075000	0	0	0	0	0	0	0	0	0	34550000	11475000	23075000	19717	3353	18685	121345	164415	164415			0	
GLLETTVQK	1	Unmodified	987.56006	0.56006086	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	34.208	33.273	2	0.032052	28130	160511_QHF_FH_JSI12i_2	61.999	27.192			0.90636	1.0099	17.331	4	0	Median	0.8607	0.72498	NaN	1	0	Median	0.79378	0.98487	NaN	1	0	Median	0.99486	1.0446	NaN	1	0	Median	0.95445	1.0356	NaN	1	0	Median	125220000	61695000	63527000	34567000	16662000	17904000	21800000	13132000	8668500	37635000	16480000	21156000	31220000	15421000	15799000	19718	318	18686	121346;121347;121348;121349	164416	164416			0	
GLLEYFK	1	Unmodified	868.46945	0.46945494	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	66.11	65.342	2	0.0023955	54639	160511_QHF_FH_JSI10i_3	111.28	86.28			0.95957	1.0031	11.818	7	0	Median	1.1652	0.97994	NaN	1	0	Median	0.91228	1.0903	11.795	2	0	Median	0.92922	0.9073	12.551	2	0	Median	1.0401	1.1083	5.0194	2	0	Median	1376600000	749350000	627220000	75284000	44655000	30629000	289890000	170420000	119470000	432600000	230970000	201630000	578810000	303310000	275500000	19719	3036	18687	121350;121351;121352;121353;121354;121355;121356	164417;164418;164419;164420;164421;164422;164423;164424	164419			8	
GLLFHPEWVVK	1	Unmodified	1323.7339	0.7339429	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	78.356	77.688	2;3	4.2146E-19	69195	160511_QHF_FH_JSI11i_3	139.86	132.13			1.0396	0.97559	68.889	7	2	Median	1.1026	0.89659	NaN	1	0	Median	1.3616	1.5849	77.816	2	1	Median	1.5476	1.4306	54.062	2	1	Median	0.54492	0.56144	78.14	2	0	Median	622930000	315980000	306950000	60048000	28233000	31815000	101080000	46322000	54759000	174640000	85412000	89224000	287170000	156010000	131150000	19720	205	18688	121357;121358;121359;121360;121361;121362;121363	164425;164426;164427;164428;164429;164430;164431;164432	164426			8	
GLLGALTSTPYSPTQHLER	0	Unmodified	2040.064	0.064003825	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	2	1	1	73.649	72.631	2;3	4.7459E-11	59690	160511_QHF_FH_JSI9i_3	132.64	127.64			0.97634	0.91337	6.5737	6	0	Median	1.1097	0.90707	0.093309	2	0	Median	0.76052	0.87222	11.409	2	0	Median	1.0684	0.97594	NaN	1	0	Median	0.89219	0.9191	NaN	1	0	Median	457280000	242840000	214430000	163310000	81609000	81700000	178550000	101390000	77155000	91597000	47938000	43659000	23820000	11899000	11921000	19721	5015	18689	121364;121365;121366;121367;121368;121369	164433;164434;164435;164436;164437;164438;164439;164440	164439			7	
GLLGCNIIPLQR	0	Unmodified	1352.7598	0.75984008	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2.8	0.4		1	4							2	2	1		79.244	78.384	2	2.8668E-11	65762	160511_QHF_FH_JSI10i_3	152.47	125.35			0.77504	0.79991	60.964	4	1	Median	1.1541	0.92888	NaN	1	0	Median	0.40905	0.49168	91.293	2	1	Median	0.74971	0.68884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91183000	49646000	41537000	24219000	9420400	14799000	35095000	23185000	11910000	31869000	17041000	14828000	0	0	0	19722	111	18690	121370;121371;121372;121373;121374	164441;164442;164443;164444;164445	164441			5	
GLLGDAPNDPR	0	Unmodified	1123.5622	0.56218613	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	0				By MS/MS	14	0							1						1	42.627	32.68	2	0.0046391	19262	160513_QHF_FH_JSI12Kac_4	70.028	37.188			0.62361	0.66881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62361	0.66881	NaN	1	1	Median	3172100	1940800	1231300	0	0	0	0	0	0	0	0	0	3172100	1940800	1231300	19723	1401;4636	18691	121375	164446	164446			1	
GLLGLPEEETELDNLTEFNTAHNK	1	Unmodified	2683.2977	0.29770475	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	96.061	95.984	3	6.7467E-17	83223	160511_QHF_FH_JSI12i_3	125.04	118.25			0.98085	0.9764	9.4578	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.67262	0.82437	NaN	1	0	Median	0.96034	0.89128	NaN	1	0	Median	0.98085	0.99512	NaN	1	0	Median	235160000	112600000	122560000	0	0	0	21297000	9858900	11438000	73074000	34077000	38997000	140790000	68665000	72127000	19724	2333	18692	121376;121377;121378	164447;164448;164449;164450;164451;164452;164453	164452			7	
GLLGMCVGEK	1	Unmodified	1062.5202	0.52018666	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.946	50.711	2	0.0027468	43531	160511_QHF_FH_JSI12i_3	72.23	62.319			0.8679	0.87738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8679	0.87738	NaN	1	1	Median	85240000	45805000	39435000	0	0	0	0	0	0	0	0	0	85240000	45805000	39435000	19725	676	18693	121379	164454	164454			1	
GLLGSADK	1	Unmodified	759.41267	0.41266834	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.33	5.44	1	1				1				1		1	1	14.08	11.239	2	0.0226	14782	160511_QHF_FH_JSI9i_1	43.808	8.9155			0.76518	0.80059	26.46	3	0	Median	0.69374	0.56054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76518	0.80059	NaN	1	0	Median	0.86007	0.94	NaN	1	0	Median	1250400000	650570000	599820000	51131000	31333000	19798000	0	0	0	1138300000	587740000	550590000	60934000	31496000	29438000	19726	3955	18694	121380;121381;121382	164455;164456	164455			2	
GLLHSFDLLK	1	Unmodified	1141.6495	0.64954457	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							3	3	4	3	71.677	70.868	2;3	9.6806E-15	62956	160511_QHF_FH_JSI11i_3	137.95	127.9			0.8946	0.89459	30.038	10	3	Median	1.1086	0.90145	24.264	3	1	Median	0.80121	0.93832	51.658	3	1	Plateau	0.9068	0.8613	4.2828	2	1	Median	0.9036	0.91339	0.81527	2	0	Median	2438100000	1208100000	1229900000	528300000	240980000	287320000	331940000	182860000	149080000	585220000	283570000	301660000	992600000	500730000	491880000	19727	4535	18695	121383;121384;121385;121386;121387;121388;121389;121390;121391;121392;121393;121394;121395	164457;164458;164459;164460;164461;164462;164463;164464;164465;164466;164467;164468;164469;164470;164471;164472;164473;164474;164475;164476;164477;164478;164479;164480;164481;164482;164483;164484;164485;164486;164487;164488	164459			32	
GLLHSSK	1	Unmodified	740.41809	0.41808807	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	6.2489	6.018	2	0.0050577	4019	160511_QHF_FH_JSI9i_3	108.24	51.728			0.79495	0.8383	31.824	4	2	Median	0.72044	0.58651	NaN	1	1	Median	0.66648	0.80735	NaN	1	1	Median	1.3453	1.2727	NaN	1	0	Median	0.87715	0.87044	NaN	1	0	Median	410530000	184590000	225950000	90552000	45298000	45254000	83681000	41269000	42412000	84187000	21309000	62877000	152110000	76709000	75403000	19728	5350	18696	121396;121397;121398;121399	164489;164490;164491	164491			3	
GLLINFIHHNWPSLLK	1	Unmodified	1901.0676	0.067573061	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	3	4	2	88.429	80.126	2;3;4	2.4926E-34	44811	160513_QHF_FH_JSI11Kac_6	174.62	157.6			1.1161	1.2406	25.94	12	1	Median	0.85821	0.78499	24.188	3	1	Plateau	1.078	1.288	20.135	3	0	Plateau	1.4184	1.338	22.633	4	0	Median	1.3008	1.383	18.272	2	0	Median	3071900000	1422600000	1649300000	888200000	480860000	407330000	1240500000	554200000	686340000	598610000	244000000	354620000	344540000	143530000	201010000	19729	2197	18697	121400;121401;121402;121403;121404;121405;121406;121407;121408;121409;121410;121411;121412	164492;164493;164494;164495;164496;164497;164498;164499;164500;164501;164502;164503;164504;164505;164506	164495			15	
GLLINFIHHNWPSLLR	0	Unmodified	1929.0737	0.073721071	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	3	2	88.757	80.755	2;3;4	3.0606E-75	46101	160513_QHF_FH_JSI10Kac_6	185.62	140.81			0.9671	0.81768	40.077	9	0	Median	1.0019	0.84488	4.6276	2	0	Median	0.58321	0.69272	10.014	3	0	Median	1.8219	1.7412	47.511	2	0	Median	0.85889	0.9248	22.591	2	0	Median	5598300000	3082600000	2515700000	1791300000	871460000	919860000	3026100000	1865500000	1160600000	562220000	232220000	330000000	218670000	113380000	105290000	19730	999	18698	121413;121414;121415;121416;121417;121418;121419;121420;121421;121422	164507;164508;164509;164510;164511;164512;164513;164514;164515;164516	164515			8	
GLLIQDAHFHQLLCLLNSQIASVWHGTLSK	1	Unmodified	3398.7921	0.79214984	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		98.528	90.646	4;5	5.0515E-185	53971	160513_QHF_FH_JSI10Kac_6	284.98	261.76			0.8099	0.86806	9.5806	5	0	Median	1.1433	0.99223	NaN	1	0	Median	0.73944	0.86924	3.5058	2	0	Median	0.85848	0.81233	9.3838	2	0	Median	NaN	NaN	NaN	0	0	Median	2968200000	1658800000	1309400000	354270000	184400000	169870000	2103100000	1211800000	891270000	510800000	262540000	248250000	0	0	0	19731	3955	18699	121423;121424;121425;121426;121427	164517;164518;164519;164520;164521;164522;164523;164524;164525;164526	164524			10	
GLLKALK	2	Acetyl (K)	783.52182	0.52182486	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	1.07						3	3	5	4	2	4	4	5	56.995	46.913	2	0.0015594	23961	160513_QHF_FH_JSI12Kac_5	111.28	40.366			1.0104	1.0592	27.37	15	0	Median	0.98996	0.85078	10.624	2	0	Median	0.75311	0.87662	19.591	4	0	Median	0.86473	1.2278	30.117	4	0	Linear	1.1026	1.1569	24.106	5	0	Median	4232100000	2112400000	2119700000	844670000	439460000	405210000	1057400000	611460000	445980000	929390000	464000000	465390000	1400600000	597510000	803080000	19732	119	18700	121428;121429;121430;121431;121432;121433;121434;121435;121436;121437;121438;121439;121440;121441;121442	164527;164528;164529;164530;164531;164532;164533;164534;164535;164536;164537;164538;164539;164540;164541;164542;164543;164544;164545;164546;164547;164548;164549;164550;164551;164552;164553;164554;164555;164556;164557	164547	78		31	
GLLKPGLNVVLEGPK	2	Unmodified	1532.929	0.92901389	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		71.805	70.349	3	2.1238E-08	57744	160511_QHF_FH_JSI9i_3	98.943	94.229			0.69003	0.78832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69003	0.78832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38731000	23712000	15019000	0	0	0	38731000	23712000	15019000	0	0	0	0	0	0	19733	4322	18701	121443;121444;121445;121446	164558;164559;164560;164561	164561			4	
GLLLATKNSHLR	1	Acetyl (K)	1363.7936	0.79358305	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		56.214	46.486	2;3	0.0002919	25158	160513_QHF_FH_JSI11Kac_6	82.705	53.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7707100	7707100	0	0	0	0	0	0	0	7707100	7707100	0	0	0	0	19734	482	18702	121447;121448	164562;164563	164562	246		2	
GLLLDTSR	0	Unmodified	873.49198	0.4919813	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	5.52		1	3				3	6		3	3	4	3	41.479	33.998	2	0.0027255	29048	160511_QHF_FH_JSI12i_3	77.923	0			0.98135	0.94372	13.817	11	1	Median	0.98176	0.82823	7.3781	2	1	Median	0.79608	0.94052	0.47959	2	0	Median	1.0614	1.0149	17.605	4	0	Median	1.017	1.0155	4.919	3	0	Plateau	1097100000	557530000	539600000	291640000	130470000	161160000	8314000	4775500	3538400	431200000	236130000	195070000	365970000	186150000	179830000	19735	860	18703	121449;121450;121451;121452;121453;121454;121455;121456;121457;121458;121459;121460;121461	164564;164565;164566;164567;164568;164569;164570;164571;164572;164573;164574;164575;164576;164577;164578	164578			15	
GLLLFGPPGNGK	1	Unmodified	1168.6604	0.66044361	5244	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.762	73.472	2	8.1651E-07	63754	160511_QHF_FH_JSI12i_3	102.95	73.137			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19736	5244	18704	121462	164579	164579			1	
GLLLFVDEADAFLRK	1	Unmodified	1705.9403	0.94030686	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	98.151	93.336	3	3.9611E-07	90929	160511_QHF_FH_JSI11i_3	114.43	92.278			1.0879	0.9553	16.944	7	1	Median	1.1094	0.9553	NaN	1	0	Median	0.92733	1.079	21.849	2	0	Median	1.0943	1.0367	0.60307	2	1	Median	0.75836	0.79524	12.016	2	0	Median	1372700000	777090000	595590000	109940000	48250000	61692000	392320000	230740000	161580000	337220000	187910000	149300000	533210000	310190000	223020000	19737	5035	18705	121463;121464;121465;121466;121467;121468;121469	164580;164581;164582;164583;164584;164585;164586	164580			7	
GLLLLLR	0	Unmodified	796.55346	0.55345934	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.385	73.537	2	1.7503E-11	41137	160513_QHF_FH_JSI10Kac_6	154.91	28.845			0.83004	0.99022	36.122	3	1	Median	0.76966	0.65314	NaN	1	0	Median	0.83004	0.99022	NaN	1	0	Median	1.3767	1.3412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118570000	65317000	53257000	43568000	26177000	17391000	63370000	33584000	29786000	11636000	5555500	6080300	0	0	0	19738	3136	18706	121470;121471;121472;121473	164587;164588;164589;164590;164591	164590			5	
GLLLPPPMK	1	Unmodified	964.57796	0.57795953	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	66.428	65.615	2	9.2407E-05	57785	160511_QHF_FH_JSI9i_2	94.407	84.819			1.1056	1.0153	9.4946	9	0	Median	1.186	0.97775	5.3284	2	0	Median	0.81418	0.96787	14.081	2	0	Median	1.1056	1.0646	4.6226	3	0	Median	1.0071	1.0651	17.464	2	0	Median	491820000	250260000	241560000	105300000	45813000	59483000	100410000	54619000	45793000	157440000	82062000	75379000	128680000	67768000	60907000	19739	454	18707	121474;121475;121476;121477;121478;121479;121480;121481;121482;121483	164592;164593;164594;164595;164596;164597;164598;164599;164600;164601;164602;164603;164604;164605;164606;164607;164608;164609;164610;164611;164612;164613;164614	164608			23	
GLLLTGHEDGTVR	0	Unmodified	1366.7205	0.72047768	2653	Q15334	LLGL1	Lethal(2) giant larvae protein homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.192	36.119	2	6.7208E-07	30681	160511_QHF_FH_JSI12i_3	91.855	71.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19740	2653	18708	121484;121485	164615;164616	164616			2	
GLLLYGPPGTGK	1	Unmodified	1171.6601	0.66010926	3472	Q8IYT4	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.85	6.41	4	4	4			2	4	4	4	5	8	7	6	63.739	58.303	2	7.2848E-11	51529	160511_QHF_FH_JSI11i_3	147.95	0			1.0268	1.0174	14.79	24	2	Median	1.1395	0.94958	3.7181	5	1	Median	0.92195	1.1029	19.076	8	1	Median	1.0371	0.99525	14.333	6	0	Median	0.98707	1.0351	13.283	5	0	Median	10272000000	5052900000	5218700000	1570300000	680010000	890250000	2258900000	1177900000	1080900000	3654400000	1725900000	1928500000	2788000000	1469000000	1319000000	19741	3472	18709	121486;121487;121488;121489;121490;121491;121492;121493;121494;121495;121496;121497;121498;121499;121500;121501;121502;121503;121504;121505;121506;121507;121508;121509;121510;121511	164617;164618;164619;164620;164621;164622;164623;164624;164625;164626;164627;164628;164629;164630;164631;164632;164633;164634;164635;164636;164637;164638;164639;164640;164641;164642;164643;164644;164645;164646;164647;164648;164649;164650;164651;164652;164653;164654;164655;164656;164657;164658;164659;164660;164661;164662;164663;164664;164665;164666;164667;164668;164669;164670;164671	164619			54	
GLLNAIVIK	1	Unmodified	939.6117	0.6117025	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	3	2	72.747	69.179	2	6.5177E-11	36857	160513_QHF_FH_JSI11Kac_6	150.84	75.526			1.0216	1.035	34.96	10	1	Median	1.442	1.0698	8.1275	3	0	Plateau	0.82279	1.0064	14.564	3	0	Median	0.78728	0.77874	51.42	3	1	Median	1.0594	1.086	NaN	1	0	Median	1081900000	575290000	506630000	197250000	84164000	113090000	252930000	152860000	100070000	309160000	170090000	139070000	322590000	168180000	154410000	19742	808	18710	121512;121513;121514;121515;121516;121517;121518;121519;121520;121521;121522	164672;164673;164674;164675;164676;164677;164678;164679;164680;164681;164682;164683;164684;164685;164686	164673			15	
GLLNGASQK	1	Unmodified	886.48723	0.48723027	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	5.97		3	4				3	3		3	3	3	4	17.919	14.427	2	3.951E-08	11748	160511_QHF_FH_JSI12i_3	146.58	103.52			1.0123	0.96961	19.538	11	2	Median	1.4589	1.2587	22.843	3	2	Median	0.86529	1.035	11.944	2	0	Median	1.0123	0.96961	17.275	3	0	Median	0.89257	0.91451	17.442	3	0	Median	858260000	416310000	441950000	133760000	53075000	80684000	140560000	81623000	58940000	251330000	105340000	145990000	332610000	176270000	156340000	19743	2665	18711	121523;121524;121525;121526;121527;121528;121529;121530;121531;121532;121533;121534;121535	164687;164688;164689;164690;164691;164692;164693;164694;164695;164696;164697;164698;164699;164700;164701;164702;164703	164702			17	
GLLPEELTPLILATQK	1	Unmodified	1735.0131	0.013137454	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.71	7	10	4							4	5	6	6	101.82	101.72	2;3	5.1399E-35	90286	160511_QHF_FH_JSI10i_2	234.92	194.33			0.90621	0.92739	11.021	13	13	Median	1.0695	0.902	2.3226	2	2	Median	0.7749	0.88527	4.615	4	4	Median	1.0161	1.0206	16.219	4	4	Median	0.88099	0.98872	5.2066	3	3	Plateau	4845200000	2718000000	2127200000	920740000	481780000	438960000	931310000	554990000	376310000	1493100000	813230000	679840000	1500000000	867980000	632060000	19744	1041	18712	121536;121537;121538;121539;121540;121541;121542;121543;121544;121545;121546;121547;121548;121549;121550;121551;121552;121553;121554;121555;121556	164704;164705;164706;164707;164708;164709;164710;164711;164712;164713;164714;164715;164716;164717;164718;164719;164720;164721;164722;164723;164724	164723			21	
GLLPEHFLFLAQK	1	Unmodified	1511.85	0.85003529	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	3	4	4	90.358	87.71	2;3	1.1117E-25	42218	160513_QHF_FH_JSI9Kac_6	167.44	124.65			1.1145	1.0902	38.264	14	3	Median	1.0794	0.91816	45.438	3	1	Plateau	0.8076	0.97144	47.436	3	1	Plateau	1.1447	1.0749	49.348	4	1	Median	1.0265	1.0744	19.485	4	0	Median	1084100000	502390000	581680000	140070000	68606000	71466000	230230000	124030000	106200000	336430000	156460000	179970000	377330000	153300000	224040000	19745	1529	18713	121557;121558;121559;121560;121561;121562;121563;121564;121565;121566;121567;121568;121569;121570	164725;164726;164727;164728;164729;164730;164731;164732;164733;164734;164735;164736;164737;164738;164739;164740;164741;164742;164743;164744;164745;164746;164747;164748;164749	164742			25	
GLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGK	1	Unmodified	3671.0774	0.077416051	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.54	96.823	3;4	1.5393E-133	57240	160513_QHF_FH_JSI10Kac_6	244.27	228.75			0.9309	1.115	11.204	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9309	1.115	11.204	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	974310000	504420000	469890000	0	0	0	974310000	504420000	469890000	0	0	0	0	0	0	19746	3459	18714	121571;121572	164750;164751;164752;164753	164753			4	
GLLPGCVYHVQLK	1	Unmodified	1482.8017	0.80170489	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3		1	1	2	70.754	64.068	3	2.8372E-05	55516	160511_QHF_FH_JSI12i_3	88.187	60.777			1.0132	1.097	16.5	4	2	Median	NaN	NaN	NaN	0	0	Median	0.83652	0.99261	NaN	1	1	Median	0.92247	0.90493	NaN	1	1	Median	1.1952	1.248	4.0959	2	0	Median	311350000	137620000	173730000	0	0	0	25223000	11051000	14172000	42509000	20153000	22356000	243620000	106420000	137200000	19747	2638;2895	18715	121573;121574;121575;121576	164754;164755;164756;164757;164758	164755			5	
GLLPGLLPAPADK	1	Unmodified	1260.7442	0.74417324	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	82.259	81.925	2	0.00026547	74249	160511_QHF_FH_JSI10i_1	76.228	58.76			0.66834	0.70965	21.281	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72604	0.82489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61523	0.61051	NaN	1	1	Median	38080000	22155000	15925000	0	0	0	24002000	13523000	10479000	0	0	0	14078000	8632600	5445800	19748	3100	18716	121577;121578	164759;164760;164761	164760			3	
GLLPHIEK	1	Unmodified	905.53345	0.53345218	5524	Q9Y2L5	TRAPPC8	Trafficking protein particle complex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	37.458	36.967	3	0.0038685	31288	160511_QHF_FH_JSI12i_3	51.346	33.96			1.0442	1.2188	72.662	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0442	1.2188	NaN	1	0	Median	1.164	1.091	102.36	2	1	Median	NaN	NaN	NaN	0	0	Median	54917000	23578000	31340000	0	0	0	18032000	9160100	8871800	36885000	14418000	22468000	0	0	0	19749	5524	18717	121579;121580;121581;121582	164762;164763;164764	164764			3	
GLLPQLLGVAPEK	1	Unmodified	1333.7969	0.79693709	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.706	3	8	6							3	4	5	5	87.464	86.925	2;3	2.5766E-15	78329	160511_QHF_FH_JSI11i_3	160.36	0			1.002	0.99499	17.202	15	3	Median	1.1193	0.958	6.3123	3	1	Plateau	0.93802	1.0015	12.172	3	0	Plateau	1.002	0.99499	10.954	5	1	Median	0.97691	1.0092	31.288	4	1	Median	1287700000	632070000	655590000	175440000	87195000	88242000	201910000	110140000	91772000	418800000	196770000	222030000	491510000	237970000	253540000	19750	5345	18718	121583;121584;121585;121586;121587;121588;121589;121590;121591;121592;121593;121594;121595;121596;121597;121598;121599	164765;164766;164767;164768;164769;164770;164771;164772;164773;164774;164775;164776;164777;164778;164779;164780;164781;164782;164783;164784;164785;164786;164787;164788	164766			22	
GLLPSQYGQEVYDTPPMAVK	1	Unmodified	2192.0824	0.082356006	1885	P56945	BCAR1	Breast cancer anti-estrogen resistance protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				81.551	80.697	3	0.00038859	71786	160511_QHF_FH_JSI9i_1	54.964	45.918			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19751	1885	18719	121600	164789	164789			1	
GLLPTPDEFPR	0	Unmodified	1240.6452	0.64518747	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		71.866	71.866	2	0.0023991	64108	160511_QHF_FH_JSI11i_3	61.161	20.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19752	4591	18720	121601	164790	164790			1	
GLLPVLGQPIIR	0	Unmodified	1274.8074	0.8074422	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	93.179	92.662	2	6.2355E-05	75898	160511_QHF_FH_JSI9i_3	96.711	76.924			0.95517	0.98804	7.9211	4	0	Median	1.3741	1.0862	NaN	1	0	Median	0.86619	1.0213	NaN	1	0	Median	1.0271	0.95587	NaN	1	0	Median	0.8883	0.90515	NaN	1	0	Median	233180000	124610000	108570000	30210000	13685000	16526000	26218000	13988000	12230000	67536000	39107000	28429000	109220000	57827000	51388000	19753	2404	18721	121602;121603;121604;121605	164791;164792;164793;164794;164795	164794			4	
GLLQLQWK	1	Unmodified	984.57565	0.57565135	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	3	3	2	2	73.383	70.408	2	1.6312E-21	63103	160511_QHF_FH_JSI11i_3	185.99	111.65			0.94438	0.98671	11.428	10	0	Median	0.98711	1.0581	15.035	3	0	Plateau	0.9224	1.0804	15.343	3	0	Plateau	0.9681	0.94742	7.5292	2	0	Median	0.97943	1.0173	6.1044	2	0	Median	2102400000	1039000000	1063300000	387900000	166910000	220980000	524190000	288140000	236050000	383610000	193130000	190480000	806650000	390820000	415830000	19754	611	18722	121606;121607;121608;121609;121610;121611;121612;121613;121614;121615	164796;164797;164798;164799;164800;164801;164802;164803;164804;164805;164806;164807;164808;164809;164810;164811;164812;164813	164796			18	
GLLQPVK	1	Unmodified	753.47487	0.47487467	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	30.544	29.794	2	0.013293	26175	160511_QHF_FH_JSI10i_2	68.033	39.505			1.0517	1.2734	45.705	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0517	1.2734	NaN	1	0	Median	1.8717	1.7523	NaN	1	1	Median	0.6571	0.71143	NaN	1	1	Median	86804000	43169000	43635000	0	0	0	25270000	12769000	12501000	21862000	7341600	14521000	39671000	23058000	16613000	19755	4749	18723	121616;121617;121618	164814;164815;164816	164816			3	
GLLQQVQGPR	0	Unmodified	1094.6196	0.61964142	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				38.032	36.559	2	0.012782	29774	160511_QHF_FH_JSI9i_3	70.525	48.997			0.80273	0.674	NaN	1	0	Median	0.80273	0.674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19069000	9633900	9434800	19069000	9633900	9434800	0	0	0	0	0	0	0	0	0	19756	3074	18724	121619	164817	164817			0	
GLLQSGQIPGR	0	Unmodified	1124.6302	0.63020611	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.98	2	4	4				1	4		3	4	4	4	44.369	40.81	2	4.0539E-38	35745	160511_QHF_FH_JSI9i_2	207.29	162.53			0.91068	0.96264	15.632	14	0	Median	1.2355	1.0424	9.9726	3	0	Median	0.81932	0.96264	5.8984	4	0	Median	0.96166	0.78887	14.203	4	0	Linear	0.6299	0.66414	28.711	3	0	Plateau	1804800000	964830000	839980000	442610000	198970000	243640000	560920000	310840000	250090000	487010000	268460000	218550000	314280000	186560000	127710000	19757	937	18725	121620;121621;121622;121623;121624;121625;121626;121627;121628;121629;121630;121631;121632;121633;121634	164818;164819;164820;164821;164822;164823;164824;164825;164826;164827;164828;164829;164830;164831;164832;164833;164834;164835;164836;164837;164838;164839;164840;164841;164842;164843	164832			26	
GLLQTEPQNNQAK	1	Unmodified	1439.7369	0.73685603	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.06	4	1				4	2			1	3	3	4	29.033	24.714	2	3.5986E-68	21396	160511_QHF_FH_JSI10i_1	239.39	190.59			0.92768	0.95913	21.907	9	2	Median	1.382	1.1305	NaN	1	0	Median	0.88927	1.0701	NaN	1	0	Median	0.92768	0.90316	6.7785	3	0	Median	0.89372	0.93485	30.884	4	2	Median	532190000	271530000	260660000	84203000	36483000	47721000	125790000	64636000	61159000	139470000	73413000	66057000	182720000	97002000	85720000	19758	5588	18726	121635;121636;121637;121638;121639;121640;121641;121642;121643;121644;121645	164844;164845;164846;164847;164848;164849;164850;164851;164852;164853;164854;164855;164856;164857;164858;164859	164850			16	
GLLQYLAAVK	1	Unmodified	1074.6437	0.64373091	5470	Q9UPW5	AGTPBP1	Cytosolic carboxypeptidase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.215	85.043	2	1.8575E-05	73852	160511_QHF_FH_JSI12i_3	110.22	97.181			1.0452	1.0447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0452	1.0447	NaN	1	1	Median	26554000	13196000	13358000	0	0	0	0	0	0	0	0	0	26554000	13196000	13358000	19759	5470	18727	121646	164860	164860			1	
GLLQYYTWSEK	1	Unmodified	1386.682	0.68196691	2685	Q15573	TAF1A	TATA box-binding protein-associated factor RNA polymerase I subunit A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	71.006	70.708	2	0.00011772	61306	160511_QHF_FH_JSI12i_3	91.584	61.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19760	2685	18728	121647	164861	164861			1	
GLLSAEVAR	0	Unmodified	914.51853	0.5185304	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.084	36.012	2	6.2199E-08	30687	160511_QHF_FH_JSI12i_3	141.52	78.231			1.1704	1.1564	5.3629	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1721	1.1134	NaN	1	0	Median	1.1687	1.2011	NaN	1	0	Median	488930000	215650000	273280000	0	0	0	0	0	0	205910000	92725000	113180000	283020000	122920000	160100000	19761	2636	18729	121648;121649	164862;164863	164863			2	
GLLSDSMTDVPVDTGVAAR	0	Unmodified	1902.9357	0.93569177	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.718	9	4	2							4	3	4	4	75.473	74.885	2;3	2.6095E-184	64598	160511_QHF_FH_JSI12i_2	319.58	309.25			0.96748	1.0108	37.251	13	2	Median	1.1187	0.92664	33.754	3	1	Median	0.89569	1.0776	7.7719	3	0	Median	0.98937	1.0499	7.2742	3	1	Plateau	0.9641	1.7991	63.536	4	0	Linear	1210600000	568140000	642460000	295140000	131470000	163680000	282660000	128850000	153810000	355130000	171590000	183550000	277670000	136240000	141430000	19762	329	18730	121650;121651;121652;121653;121654;121655;121656;121657;121658;121659;121660;121661;121662;121663;121664	164864;164865;164866;164867;164868;164869;164870;164871;164872;164873;164874;164875;164876;164877;164878;164879;164880;164881;164882;164883;164884	164868			21	
GLLSDSMTDVPVDTGVAAR	0	Oxidation (M)	1918.9306	0.93060639	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	1	0		By MS/MS			1	0	2										2			63.186	62.805	2	8.6003E-16	56864	160511_QHF_FH_JSI10i_1	117.07	103.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19763	329	18730	121665;121666	164885;164886	164886		128	2	
GLLSELLHNCDGQLK	1	Unmodified	1695.8614	0.86140461	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	76.802	76.378	2;3	3.7698E-21	68047	160511_QHF_FH_JSI11i_3	169.58	137.57			0.95859	0.86879	30.814	4	0	Median	1.2575	1.0545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72946	0.68087	7.0762	2	0	Median	1.2095	1.2362	NaN	1	0	Median	147560000	75546000	72013000	15025000	6034400	8990400	0	0	0	86075000	45198000	40877000	46459000	24314000	22145000	19764	1506	18731	121667;121668;121669;121670;121671;121672	164887;164888;164889;164890	164887			4	
GLLSPPMGQSGLR	0	Unmodified	1311.6969	0.69690547	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				59.827	58.293	2	0.0082579	47927	160511_QHF_FH_JSI9i_3	59.067	52.764			1.2118	1.0386	NaN	1	1	Median	1.2118	1.0386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9295000	3844200	5450800	9295000	3844200	5450800	0	0	0	0	0	0	0	0	0	19765	3330	18732	121673	164891	164891			1	
GLLSQGSPLSWEETK	1	Unmodified	1630.8203	0.82025131	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.495	71.859	2	1.4604E-116	62371	160511_QHF_FH_JSI12i_3	270.2	225.89			0.91849	0.93406	8.1645	6	1	Median	0.98766	0.81802	NaN	1	0	Median	0.78066	0.94906	NaN	1	0	Median	0.90003	0.8775	6.8204	2	1	Median	0.91849	0.97922	4.6649	2	0	Median	311160000	166250000	144910000	25582000	12607000	12976000	36786000	20700000	16086000	84206000	46229000	37978000	164590000	86719000	77867000	19766	1622	18733	121674;121675;121676;121677;121678;121679	164892;164893;164894;164895;164896;164897;164898;164899;164900	164900			8	
GLLSSLDHTSIR	0	Unmodified	1297.699	0.69901396	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.68		1	8						3	3	2	4	3	53.369	50.273	2;3	4.2612E-93	41397	160511_QHF_FH_JSI9i_3	258.52	215.44			0.83092	0.85005	20.508	12	1	Median	1.2526	0.99524	6.258	3	1	Plateau	0.76102	0.87696	3.0812	2	0	Median	0.83092	0.79158	3.7172	4	0	Median	0.54281	0.54707	30.47	3	0	Plateau	4500700000	2346400000	2154300000	1377100000	592270000	784790000	1049500000	595280000	454250000	1464500000	769870000	694590000	609660000	389020000	220640000	19767	905	18734	121680;121681;121682;121683;121684;121685;121686;121687;121688;121689;121690;121691	164901;164902;164903;164904;164905;164906;164907;164908;164909;164910;164911;164912;164913;164914;164915;164916;164917;164918;164919	164912			19	
GLLTILK	1	Unmodified	756.51093	0.51092582	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	68.371	63.579	2	0.00095315	56136	160511_QHF_FH_JSI11i_3	126.24	23.263			0.9553	0.99398	9.2239	8	0	Median	1.1909	0.97285	7.0637	2	0	Median	0.81254	0.95813	9.4702	2	0	Median	0.98161	0.93811	19.802	2	0	Median	0.9553	0.99876	4.7041	2	0	Median	1288100000	626310000	661810000	354120000	166230000	187890000	216130000	118580000	97549000	282320000	140280000	142040000	435550000	201220000	234320000	19768	1450	18735	121692;121693;121694;121695;121696;121697;121698;121699	164920;164921;164922;164923;164924;164925;164926;164927;164928;164929;164930;164931;164932;164933	164920			14	
GLLTLFATT	0	Unmodified	935.53278	0.53278348	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13.5	5.16		1						1	4	1	1	2	2	93.814	87.11	2	3.1319E-05	46665	160513_QHF_FH_JSI11Kac_6	125.86	114.49			1.0723	1.2919	32.203	5	0	Median	2.1018	1.8239	NaN	1	0	Median	1.0723	1.2919	NaN	1	0	Median	0.82695	0.78987	NaN	1	0	Median	1.0152	1.1104	22.013	2	0	Median	81689000	41746000	39943000	13857000	5051100	8805900	26116000	15075000	11041000	18387000	10602000	7785300	23329000	11018000	12311000	19769	445	18736	121700;121701;121702;121703;121704;121705	164934;164935;164936;164937;164938	164936			5	
GLLTPIIK	1	Unmodified	853.56369	0.56368968	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	62.806	62.043	2	0.00045826	53431	160511_QHF_FH_JSI12i_3	107.59	54.91			1.1473	1.1337	6.8804	5	0	Median	1.3963	1.1337	NaN	1	0	Median	1.0002	1.2107	NaN	1	0	Median	1.0994	1.0688	7.4846	2	0	Median	1.1473	1.1864	NaN	1	0	Median	551500000	267850000	283650000	65524000	26591000	38933000	85151000	45900000	39250000	216420000	108320000	108100000	184400000	87036000	97364000	19770	122	18737	121706;121707;121708;121709;121710	164939;164940;164941;164942	164942			4	
GLLTPIIKDAAAK	2	Acetyl (K)	1351.8075	0.80750177	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.922	71.372	2	0.034776	37807	160513_QHF_FH_JSI11Kac_5	45.137	25.866			0.81207	0.75246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81207	0.75246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1241100	694170	546880	0	0	0	0	0	0	1241100	694170	546880	0	0	0	19771	122	18738	121711	164943	164943			1	
GLLTTGK	1	Unmodified	688.41194	0.41194006	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.353	17.392	2	0.033424	13979	160511_QHF_FH_JSI12i_3	50.632	1.2733			0.9741	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9741	1.0113	NaN	1	0	Median	115430000	62458000	52974000	0	0	0	0	0	0	0	0	0	115430000	62458000	52974000	19772	3670	18739	121712	164944	164944			1	
GLLTYTSWEDALSR	0	Unmodified	1610.794	0.79403656	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	3	2	2	2	89.692	87.204	2	8.505E-52	75379	160511_QHF_FH_JSI10i_3	214.26	196.82			0.97811	0.95299	14.347	9	2	Median	0.93144	0.79817	18.809	3	1	Plateau	0.86754	1.0217	17.753	2	0	Median	1.0094	0.99491	6.0882	2	1	Median	0.87344	0.92904	20.627	2	0	Median	689350000	341870000	347490000	146690000	68988000	77704000	181340000	96636000	84708000	78456000	36652000	41804000	282860000	139590000	143270000	19773	1306	18740	121713;121714;121715;121716;121717;121718;121719;121720;121721	164945;164946;164947;164948;164949;164950;164951;164952;164953;164954;164955	164947			11	
GLLVDRPSETK	1	Unmodified	1213.6667	0.6666512	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		25.918	25.035	2;3	1.207E-08	21336	160511_QHF_FH_JSI11i_3	132.88	103.4			0.84327	0.86894	19.138	6	0	Median	1.0466	0.86894	8.2009	2	0	Median	0.84327	0.97906	4.4239	2	0	Median	0.68849	0.65368	4.6293	2	0	Median	NaN	NaN	NaN	0	0	Median	979850000	483610000	496240000	378130000	168730000	209410000	315070000	154470000	160600000	286650000	160410000	126240000	0	0	0	19774	5380	18741	121722;121723;121724;121725;121726;121727	164956;164957;164958;164959;164960;164961;164962;164963;164964	164956			9	
GLMELHMVLPAPDTDEK	1	Unmodified	1894.9169	0.91687058	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	80.763	80.535	2;3	4.5885E-07	70084	160511_QHF_FH_JSI12i_3	117.4	110.34			0.99324	1.0157	13.221	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0139	1.237	NaN	1	1	Median	0.97911	0.94033	10.905	2	2	Median	0.94378	0.97227	6.2056	2	2	Median	690900000	349050000	341850000	0	0	0	35250000	15886000	19364000	355650000	188550000	167110000	299990000	144620000	155370000	19775	3860	18742	121728;121729;121730;121731;121732	164965;164966;164967;164968;164969;164970;164971	164970			7	
GLMELHMVLPAPDTDEK	1	Oxidation (M)	1910.9118	0.9117852	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	70.064	69.766	3	0.00020088	60415	160511_QHF_FH_JSI12i_3	57.499	47.014			0.98051	1.0154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98051	1.0154	NaN	1	0	Median	22804000	13065000	9739500	0	0	0	0	0	0	0	0	0	22804000	13065000	9739500	19776	3860	18742	121733	164972	164972		2311	1	
GLMGEANIR	0	Unmodified	959.48585	0.48585006	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				33.02	31.978	2	0.019471	27848	160511_QHF_FH_JSI9i_2	50.607	24.005			2.4367	2.095	NaN	1	1	Median	2.4367	2.095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55853000	21483000	34370000	55853000	21483000	34370000	0	0	0	0	0	0	0	0	0	19777	5675	18743	121734	164973	164973			1	
GLMGMCVNER	0	Unmodified	1165.5042	0.50421902	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							3	2	1	2	41.67	40.649	2	9.7684E-06	35876	160511_QHF_FH_JSI10i_2	105.1	96.569			1.1778	1.1546	25.243	7	1	Median	1.5892	1.3149	18.382	2	1	Median	0.76717	0.92276	16.48	2	0	Median	0.74971	0.74942	NaN	1	0	Median	1.2164	1.2863	1.7642	2	0	Median	508560000	259380000	249180000	72957000	32886000	40071000	170370000	90617000	79756000	67384000	45132000	22251000	197850000	90749000	107100000	19778	3973	18744	121735;121736;121737;121738;121739;121740;121741;121742	164974;164975;164976;164977;164978;164979;164980;164981;164982;164983;164984	164983			11	
GLMGNVICSPAYWK	1	Unmodified	1594.7636	0.76360482	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.701	79.459	2	1.2597E-12	69003	160511_QHF_FH_JSI12i_3	116.55	101.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19779	1434	18745	121743	164985	164985			1	
GLMLVHNK	1	Unmodified	910.50586	0.50585722	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	6.41		1	11						8	6	5	4	5	26.064	22.142	2;3	9.8627E-05	17852	160511_QHF_FH_JSI9i_3	129.96	78.995			0.95139	0.95329	47.266	20	2	Median	1.184	0.99588	57.891	6	1	Median	0.79357	0.95577	50.9	5	0	Median	0.93022	0.89902	7.7202	4	0	Median	0.95935	1.0408	55.527	5	1	Median	2645000000	1274700000	1370300000	524180000	203670000	320510000	540260000	278980000	261280000	537510000	263350000	274150000	1043000000	528700000	514350000	19780	1596	18746	121744;121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756;121757;121758;121759;121760;121761;121762;121763	164986;164987;164988;164989;164990;164991;164992;164993;164994;164995;164996;164997;164998;164999;165000;165001;165002;165003;165004;165005;165006;165007;165008;165009;165010;165011;165012	164996			26	
GLMLVHNK	1	Oxidation (M)	926.50077	0.50077184	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	8.2	6.37			3						2	3		1	1	16.311	15.786	2	0.0014754	12787	160511_QHF_FH_JSI9i_3	98.133	60			1.9822	1.7989	2.1938	2	2	Median	2.1824	1.7712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8003	1.827	NaN	1	1	Median	52548000	19663000	32885000	23815000	8807900	15007000	0	0	0	0	0	0	28733000	10855000	17878000	19781	1596	18746	121764;121765;121766;121767;121768	165013;165014;165015;165016;165017	165015		1268	5	
GLMPDGTSR	0	Unmodified	932.43857	0.43856552	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	6	3					3			2	4	2	4	24.25	21.158	2	8.5093E-05	18730	160511_QHF_FH_JSI12i_1	97.798	62.99			1.0551	1.002	19.154	10	2	Median	0.99521	0.83904	5.7757	2	0	Median	0.94421	1.1344	24.536	4	2	Median	1.1228	1.1005	9.4923	2	0	Median	0.98475	1.0553	11.094	2	0	Median	1677700000	835040000	842700000	420920000	178020000	242900000	548220000	299360000	248860000	360000000	175920000	184080000	348620000	181750000	166870000	19782	1006	18747	121769;121770;121771;121772;121773;121774;121775;121776;121777;121778;121779;121780	165018;165019;165020;165021;165022;165023;165024;165025;165026;165027;165028;165029;165030;165031;165032;165033;165034	165020			16	
GLMPDGTSR	0	Oxidation (M)	948.43348	0.43348014	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	1	0				By MS/MS	14	0							1						1	13.122	5.5671	2	0.036317	5215	160513_QHF_FH_JSI12Kac_4	54.549	35.819			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19783	1006	18747	121781	165035	165035			1	
GLMPEFQFGTYSESER	0	Unmodified	1876.8302	0.83016406	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							1	3	2	3	82.735	82.304	2;3	1.0288E-51	71432	160511_QHF_FH_JSI12i_3	213.73	190.36			0.99197	1.0731	22.092	8	4	Median	1.4978	1.2487	NaN	1	1	Median	1.0182	1.2542	25.859	2	1	Median	1.0702	1.0148	19.36	2	1	Median	0.96874	0.97854	21.437	3	1	Median	497060000	244530000	252520000	68285000	24029000	44257000	100950000	44606000	56347000	146140000	75192000	70951000	181670000	100700000	80970000	19784	4153	18748	121782;121783;121784;121785;121786;121787;121788;121789;121790	165036;165037;165038;165039;165040;165041;165042;165043;165044;165045;165046;165047;165048	165047			12	
GLMPEFQFGTYSESERK	1	Unmodified	2004.9251	0.92512708	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		72.92	72.2	3	8.1797E-05	64242	160511_QHF_FH_JSI11i_3	84.14	69.885			1.102	1.1381	17.775	2	0	Median	NaN	NaN	NaN	0	0	Median	1.102	1.2906	NaN	1	0	Median	1.1021	1.0037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65693000	27929000	37764000	0	0	0	18403000	8571000	9831600	47291000	19358000	27933000	0	0	0	19785	4153	18749	121791;121792	165049	165049			0	
GLMPGLTFSNELISR	0	Unmodified	1633.8498	0.84977729	1373;3241	P31350;Q7LG56	RRM2;RRM2B	Ribonucleoside-diphosphate reductase subunit M2;Ribonucleoside-diphosphate reductase subunit M2 B	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			94.59	93.618	2	0.010906	78108	160511_QHF_FH_JSI10i_3	54.776	44.771			1.668	1.6617	13.861	2	2	Median	2.1424	1.8328	NaN	1	1	Median	1.2986	1.5065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19215000	6017800	13198000	8530200	2564900	5965300	10685000	3452900	7232300	0	0	0	0	0	0	19786	1373;3241	18750	121793;121794	165050;165051	165050			2	
GLMTLQALYGTIPQIFGK	1	Unmodified	1950.0649	0.064855448	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.003	89.924	3	1.1506E-11	50788	160513_QHF_FH_JSI11Kac_6	119.46	110.04			1.0331	1.0004	6.0327	3	1	Plateau	1.0331	0.89877	NaN	1	1	Median	0.8697	0.99497	NaN	1	0	Median	1.0636	1.0004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	317580000	175210000	142370000	66878000	30878000	36000000	112230000	65385000	46843000	138480000	78949000	59528000	0	0	0	19787	3972	18751	121795;121796;121797	165052;165053;165054	165052			3	
GLMVITGSESPIVVVLSGSMEPAFHR	0	Unmodified	2712.3979	0.39789326	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.345	90.625	3	1.2323E-34	52486	160513_QHF_FH_JSI10Kac_6	155.05	146.18			0.97285	1.1716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97285	1.1716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295040000	140320000	154720000	0	0	0	295040000	140320000	154720000	0	0	0	0	0	0	19788	2067	18752	121798	165055	165055			1	
GLMVLELPK	1	Unmodified	998.58344	0.58343884	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	3	1	78.734	77.914	2	2.3118E-05	68657	160511_QHF_FH_JSI9i_2	105.57	105.57			0.99899	0.99435	10.553	4	2	Median	1.0234	0.86192	NaN	1	0	Median	0.78288	0.97346	NaN	1	0	Median	1.0268	1.0157	NaN	1	1	Median	0.9752	1.1111	NaN	1	1	Median	224400000	118910000	105490000	40250000	18304000	21946000	48456000	28044000	20412000	82706000	46090000	36616000	52986000	26467000	26519000	19789	4284	18753	121799;121800;121801;121802;121803;121804	165056;165057;165058;165059;165060;165061;165062;165063	165057			8	
GLMVSLSTDDPLQFHFTK	1	Unmodified	2035.0085	0.0084627814	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	97.039	97.047	2	2.7677E-23	84029	160511_QHF_FH_JSI12i_3	131.13	118.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19790	2168	18754	121805;121806	165064;165065	165065			2	
GLMYPYIFHVLTK	1	Unmodified	1580.8425	0.84250707	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	5	3	3	4	92.678	87.904	2;3	1.5422E-25	43732	160513_QHF_FH_JSI9Kac_6	139.89	107.82			0.94102	0.96907	18.901	14	1	Median	1.1201	0.95991	3.1566	4	0	Median	0.83511	0.98333	1.0935	3	0	Median	1.0159	0.9682	12.192	3	0	Median	0.8641	0.91197	33.17	4	1	Median	4548900000	2349400000	2199400000	1149200000	529320000	619880000	1740700000	992080000	748610000	896830000	432760000	464080000	762160000	395290000	366870000	19791	5147	18755	121807;121808;121809;121810;121811;121812;121813;121814;121815;121816;121817;121818;121819;121820;121821	165066;165067;165068;165069;165070;165071;165072;165073;165074;165075;165076;165077;165078;165079;165080;165081;165082;165083;165084;165085;165086;165087;165088;165089;165090;165091;165092;165093;165094;165095;165096;165097;165098	165086			33	
GLMYPYIFHVLTK	1	Oxidation (M)	1596.8374	0.83742169	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	2	2	2	86.925	81.893	2;3	1.0863E-12	41403	160513_QHF_FH_JSI9Kac_6	120.14	78.492			1.0652	0.97702	7.3689	7	0	Median	1.0908	0.9297	7.0203	2	0	Median	0.81739	0.97253	3.7716	2	0	Median	1.1155	1.0429	NaN	1	0	Median	0.99455	1.0331	10.689	2	0	Median	1056700000	517980000	538720000	340970000	154310000	186660000	315990000	166950000	149040000	189920000	90105000	99819000	209810000	106610000	103200000	19792	5147	18755	121822;121823;121824;121825;121826;121827;121828;121829	165099;165100;165101;165102;165103;165104;165105;165106;165107	165102		2589	6	
GLMYPYIYHVLTK	1	Unmodified	1596.8374	0.83742169	5084	Q9NX05	FAM120C	Constitutive coactivator of PPAR-gamma-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		2	1	1	83.736	79.668	3	0.00017595	72861	160511_QHF_FH_JSI12i_3	79.466	61.371			1.1439	1.2637	28.671	4	2	Median	NaN	NaN	NaN	0	0	Median	0.86573	1.0435	25.243	2	0	Median	1.7968	1.76	NaN	1	1	Median	1.2716	1.2803	NaN	1	1	Median	217550000	118130000	99418000	0	0	0	148480000	88575000	59907000	39654000	15670000	23984000	29409000	13883000	15527000	19793	5084	18756	121830;121831;121832;121833	165108;165109;165110;165111	165110			3	
GLMYQWIEQDMEK	1	Unmodified	1669.748	0.74801434	4778	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.933	87.823	2	1.1027E-10	76244	160511_QHF_FH_JSI12i_3	152.07	138.87			1.1261	1.1152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1261	1.1152	NaN	1	0	Median	30222000	13986000	16235000	0	0	0	0	0	0	0	0	0	30222000	13986000	16235000	19794	4778	18757	121834	165112	165112			1	
GLNDKVK	2	Acetyl (K)	814.45487	0.45486751	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	0.661					1	4	3			1	3	2	2	24.161	14.891	2	0.00064349	10481	160513_QHF_FH_JSI10Kac_3	116.37	34.587			1.0048	1.0932	70.334	7	2	Median	1.348	1.0932	NaN	1	0	Median	0.83093	0.99608	84.738	3	1	Median	2.0337	1.9977	108.45	2	1	Median	1.0048	1.108	NaN	1	0	Median	202150000	94939000	107210000	106950000	47825000	59128000	42859000	22018000	20840000	26968000	11923000	15045000	25366000	13172000	12194000	19795	1507	18758	121835;121836;121837;121838;121839;121840;121841;121842	165113;165114;165115;165116;165117;165118;165119	165119	1531		7	
GLNIILISR	0	Unmodified	997.62842	0.6284152	2820	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	78.541	69.163	2	0.0023602	37874	160513_QHF_FH_JSI11Kac_6	84.083	37.657			1.0006	1.0323	17.203	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92536	0.9141	NaN	1	1	Median	1.082	1.1659	NaN	1	0	Median	49278000	25629000	23649000	0	0	0	0	0	0	33659000	18086000	15573000	15618000	7543300	8075100	19796	2820	18759	121843;121844	165120;165121;165122	165120			3	
GLNISAVR	0	Unmodified	828.48175	0.48175096	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.29		5	2				1	3	1	4	2	2	4	38.4	33.649	2	0.00024363	29380	160511_QHF_FH_JSI9i_2	116.88	28.855			1.0049	1.0523	22.162	12	2	Median	1.1579	0.97637	30.306	4	1	Median	0.86294	1.0133	5.3554	2	0	Median	1.0229	1.0015	14.467	2	0	Median	1.0049	1.0628	24.7	4	1	Median	3013500000	1323800000	1689700000	588300000	266030000	322270000	900740000	460030000	440710000	22432000	9131700	13300000	1502100000	588620000	913440000	19797	1237	18760	121845;121846;121847;121848;121849;121850;121851;121852;121853;121854;121855;121856	165123;165124;165125;165126;165127;165128;165129;165130;165131;165132;165133;165134	165128			12	
GLNPGTLNILVR	0	Unmodified	1265.7456	0.74557022	2646	Q15262	PTPRK	Receptor-type tyrosine-protein phosphatase kappa	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.799	76.4	2	0.057954	64170	160511_QHF_FH_JSI10i_3	34.721	7.606			0.85735	1.0072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85735	1.0072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9127100	5881500	3245700	0	0	0	9127100	5881500	3245700	0	0	0	0	0	0	19798	2646	18761	121857	165135	165135			1	
GLNQDSTDSK	1	Unmodified	1063.4782	0.47818172	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0			By MS/MS		7	6	1					1						2		6.6595	2.9453	2	1.515E-05	3864	160511_QHF_FH_JSI11i_1	151.83	123.4			0.36673	0.35022	130.67	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36673	0.35022	130.67	2	1	Median	NaN	NaN	NaN	0	0	Median	369570000	336910000	32658000	0	0	0	0	0	0	369570000	336910000	32658000	0	0	0	19799	1512	18762	121858;121859	165136;165137	165136			2	
GLNSESMTEETLK	1	Unmodified	1437.6657	0.6657245	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.91	4	5				4	3			2	4	4	6	44.804	40.566	2	3.7721E-82	36207	160511_QHF_FH_JSI10i_1	248.05	211.67			1.0361	1.1014	40.35	13	6	Median	1.2362	1.014	19.409	2	0	Median	0.89844	1.0749	45.959	4	2	Median	1.0294	1.007	61.306	3	2	Median	1.1203	1.2087	35.566	4	2	Median	5693800000	2880500000	2813300000	1120600000	507350000	613230000	1506300000	846400000	659860000	1398500000	697770000	700720000	1668400000	828990000	839450000	19800	1372	18763	121860;121861;121862;121863;121864;121865;121866;121867;121868;121869;121870;121871;121872;121873;121874;121875	165138;165139;165140;165141;165142;165143;165144;165145;165146;165147;165148;165149;165150;165151;165152;165153;165154;165155;165156;165157;165158;165159;165160;165161	165148			24	
GLNSESMTEETLK	1	Oxidation (M)	1453.6606	0.66063912	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.56	11					5				4	4	5	3	28.117	25.091	2	7.2611E-31	35900	160511_QHF_FH_JSI9i_1	169.52	140.36			0.88716	0.87488	29.711	13	5	Median	0.83512	0.67548	52.707	2	1	Median	0.67493	0.78597	20.273	3	0	Median	1.0634	0.99619	33.88	5	4	Median	0.78621	0.8033	19.631	3	0	Median	614950000	312170000	302780000	100150000	51369000	48779000	138560000	70842000	67720000	210260000	102880000	107390000	165970000	87080000	78895000	19801	1372	18763	121876;121877;121878;121879;121880;121881;121882;121883;121884;121885;121886;121887;121888;121889;121890;121891	165162;165163;165164;165165;165166;165167;165168;165169;165170;165171;165172;165173;165174;165175;165176;165177;165178;165179;165180;165181;165182;165183;165184	165180		1009	23	
GLNSKLLDIR	1	Acetyl (K)	1169.6768	0.67682195	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	75.903	65.311	2	1.3235E-06	34759	160513_QHF_FH_JSI11Kac_5	129.16	44.943			0.42568	0.42635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42568	0.42635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8802000	6680200	2121800	0	0	0	0	0	0	7811900	5690100	2121800	990110	990110	0	19802	1748	18764	121892;121893	165185;165186	165185	1768		2	
GLNTDELGQK	1	Unmodified	1073.5353	0.53530267	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		26.302	26.124	2	5.2427E-09	23033	160511_QHF_FH_JSI11i_1	126.07	67.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19803	3494	18765	121894	165187	165187			1	
GLNTIPLFVQLLYSPIENIQR	0	Unmodified	2427.3526	0.35258127	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	100.4	91.766	2;3	1.5493E-16	55582	160513_QHF_FH_JSI10Kac_6	122.53	108.51			1.4327	1.2257	29.592	5	2	Median	1.443	1.2228	NaN	1	0	Median	1.0247	1.2257	NaN	1	0	Median	1.8866	1.8094	36.631	2	1	Median	1.0653	1.1229	NaN	1	1	Median	515870000	222200000	293670000	124900000	53053000	71845000	139590000	72138000	67448000	183800000	70833000	112970000	67583000	26178000	41406000	19804	1422	18766	121895;121896;121897;121898;121899	165188;165189;165190;165191;165192;165193	165193			6	
GLNVAEVQK	1	Unmodified	956.5291	0.52909508	473	O75093	SLIT1	Slit homolog 1 protein	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	37.444	37.032	2	0.0012639	33393	160511_QHF_FH_JSI11i_1	69.812	51.826			0.61014	0.63624	11.691	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.52502	0.61107	NaN	1	0	Median	0.70906	0.67564	NaN	1	0	Median	0.75222	0.77146	NaN	1	0	Median	113070000	69911000	43155000	0	0	0	39782000	28623000	11159000	39274000	22933000	16341000	34011000	18355000	15655000	19805	473	18767	121900;121901;121902	165194	165194			1	
GLPDDHAGPIR	0	Unmodified	1146.5782	0.57817054	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	26.284	25.371	2	0.0040301	22048	160511_QHF_FH_JSI10i_2	66.299	42.144			0.67823	0.8261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67823	0.8261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14721000	12082000	2639100	0	0	0	14721000	12082000	2639100	0	0	0	0	0	0	19806	4417	18768	121903;121904	165195;165196	165196			2	
GLPDFASFSAK	1	Unmodified	1138.5659	0.56587452	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.8	71.921	2	0.00014924	63031	160511_QHF_FH_JSI11i_2	83.499	77.46			0.94372	1.0451	8.6673	4	2	Median	1.1558	1.0273	NaN	1	1	Median	0.91199	1.1125	NaN	1	0	Median	0.92277	0.90882	NaN	1	0	Median	0.96514	1.0633	NaN	1	1	Median	195750000	93339000	102410000	36578000	16928000	19649000	35290000	17904000	17386000	65314000	31660000	33654000	58563000	26846000	31717000	19807	5001	18769	121905;121906;121907;121908	165197;165198;165199;165200;165201	165199			4	
GLPDNISSVLNK	1	Unmodified	1255.6772	0.67721588	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	3	2	69.722	68.82	2	1.1039E-14	62336	160511_QHF_FH_JSI10i_1	140.49	95.404			0.92089	0.9434	2.079	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81262	0.97979	NaN	1	0	Median	0.93838	0.9434	NaN	1	0	Median	0.84402	0.9472	NaN	1	0	Median	478120000	273870000	204240000	0	0	0	120050000	74831000	45217000	196930000	107630000	89306000	161140000	91417000	69718000	19808	2772	18770	121909;121910;121911;121912;121913;121914;121915;121916;121917;121918	165202;165203;165204;165205;165206;165207;165208;165209	165206			8	
GLPEGFAHPK	1	Unmodified	1051.5451	0.5450795	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	30.509	30.154	2;3	4.4247E-05	25251	160511_QHF_FH_JSI12i_3	67.704	54.914			1.1083	1.0458	26.579	7	0	Median	1.0589	0.89275	NaN	1	0	Median	0.7397	0.89388	NaN	1	0	Median	1.1083	1.0458	12.979	3	0	Median	1.5386	1.5252	28.414	2	0	Median	533770000	245360000	288420000	40010000	20384000	19626000	62938000	35599000	27339000	196580000	83910000	112670000	234240000	105470000	128780000	19809	5743	18771	121919;121920;121921;121922;121923;121924;121925	165210;165211;165212;165213;165214;165215	165213			6	
GLPFDGR	0	Unmodified	760.38679	0.38678794	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	34.925	34.532	2	0.019031	30889	160511_QHF_FH_JSI11i_1	58.981	9.6227			0.9336	0.93089	11.963	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9182	1.0942	NaN	1	0	Median	0.94777	0.93089	NaN	1	0	Median	0.8106	0.86626	NaN	1	1	Median	112200000	59184000	53020000	0	0	0	44574000	20386000	24188000	45079000	24546000	20533000	22552000	14253000	8299600	19810	1787	18772	121926;121927;121928	165216;165217	165216			2	
GLPFGCSK	1	Unmodified	864.41637	0.41637351	1383;1864;1382	P31943;P55795;P31942	HNRNPH1;HNRNPH2;HNRNPH3	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H3	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	2	3	4	36.052	35.367	2	0.0066395	30077	160511_QHF_FH_JSI12i_3	61.962	34.646			0.94236	1.0142	55.5	10	1	Median	1.9103	1.533	NaN	1	0	Median	0.98571	1.1876	32.747	2	0	Median	0.80849	0.81103	28.456	3	1	Median	0.93398	0.94128	84.717	4	0	Median	1654900000	801930000	852950000	24656000	8210300	16446000	341340000	162150000	179190000	663760000	357080000	306680000	625140000	274500000	350640000	19811	1383;1864;1382	18773	121929;121930;121931;121932;121933;121934;121935;121936;121937;121938	165218;165219;165220;165221;165222;165223;165224;165225;165226;165227;165228;165229;165230	165229			13	
GLPFQANAQDIINFFAPLK	1	Unmodified	2103.1153	0.11531111	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	102.82	102.83	2;3	4.8933E-21	89600	160511_QHF_FH_JSI12i_3	200.13	155.51			1.2416	1.2507	37.518	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2416	1.2507	37.518	2	1	Median	223070000	104770000	118300000	0	0	0	0	0	0	0	0	0	223070000	104770000	118300000	19812	2314	18774	121939;121940	165231;165232;165233	165233			3	
GLPFQANAQDIINFFAPLKPVR	1	Unmodified	2455.3376	0.33759991	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		102.29	102.29	3	6.8669E-24	91399	160511_QHF_FH_JSI11i_3	175.32	155.17			0.57346	0.52707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57346	0.52707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	138450000	78022000	60432000	0	0	0	0	0	0	138450000	78022000	60432000	0	0	0	19813	2314	18775	121941	165234	165234			1	
GLPGDVTNQEVHDLLSDYELK	1	Unmodified	2341.1438	0.14377029	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.188	95.917	3	8.7514E-11	82583	160511_QHF_FH_JSI12i_2	112.58	99.732			0.93251	0.9778	4.8823	4	0	Median	1.0991	0.93758	NaN	1	0	Median	0.83151	1.0147	NaN	1	0	Median	0.93402	0.94221	NaN	1	0	Median	0.931	1.0296	NaN	1	0	Median	387450000	198830000	188620000	65552000	30945000	34607000	83971000	44957000	39013000	109260000	54079000	55181000	128670000	68849000	59820000	19814	3459	18776	121942;121943;121944;121945	165235;165236;165237;165238;165239;165240	165235			6	
GLPHVIYCR	0	Unmodified	1113.5753	0.57533377	2709;2124;4306	Q15796;O15198;Q99717;Q15797;P84022	SMAD2;SMAD9;SMAD5;SMAD1;SMAD3	Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9;Mothers against decapentaplegic homolog 5;Mothers against decapentaplegic homolog 1;Mothers against decapentaplegic homolog 3	no	no	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		38.867	37.873	3	0.008329	31645	160511_QHF_FH_JSI10i_3	39.022	37.189			0.67704	0.62814	25.815	3	0	Plateau	1.272	1.0178	NaN	1	0	Median	0.76929	0.90221	NaN	1	0	Median	0.67704	0.62038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78280000	43554000	34726000	24412000	14236000	10176000	25682000	15170000	10512000	28186000	14147000	14038000	0	0	0	19815	2709;4306;2124	18777	121946;121947;121948	165241	165241			1	
GLPILVELLR	0	Unmodified	1121.7172	0.7172302	4285	Q99569;Q9UQB3	PKP4;CTNND2	Plakophilin-4;Catenin delta-2	yes	no	0	0	0	0				By MS/MS	3	0			1										1	102.04	102.05	2	0.0019485	88786	160511_QHF_FH_JSI12i_3	76.827	32.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19816	4285	18778	121949	165242	165242			1	
GLPLFPLVK	1	Unmodified	982.62154	0.62153891	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.2	0.4		4	1							2	1	1	1	92.92	92.325	2	0.0039309	81127	160511_QHF_FH_JSI9i_2	68.915	60.142			1.6538	1.8693	90.435	5	1	Median	2.9606	2.5688	0.038502	2	1	Median	0.24153	0.31105	NaN	1	0	Median	0.85615	0.86174	NaN	1	0	Median	1.6538	1.8693	NaN	1	0	Median	62684000	27804000	34880000	20158000	5544700	14613000	12688000	10025000	2662800	18644000	8117400	10526000	11194000	4117000	7077100	19817	1060	18779	121950;121951;121952;121953;121954	165243;165244;165245	165245			3	
GLPLGSAVSSPVLFSPVGR	0	Unmodified	1839.0254	0.025433475	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							4	5	3	3	97.811	97.65	2;3	4.5269E-14	85596	160511_QHF_FH_JSI9i_2	178.58	162.44			0.94618	1.0015	15.963	15	5	Median	1.3858	1.1649	24.674	4	2	Median	0.85023	1.0015	10.35	5	3	Median	1.1338	1.0514	6.9116	3	0	Plateau	0.94618	0.98111	16.43	3	0	Median	385290000	196210000	189080000	91012000	41438000	49573000	122180000	66837000	55343000	90031000	44509000	45522000	82066000	43421000	38645000	19818	3765	18780	121955;121956;121957;121958;121959;121960;121961;121962;121963;121964;121965;121966;121967;121968;121969	165246;165247;165248;165249;165250;165251;165252;165253;165254;165255;165256;165257;165258;165259;165260;165261;165262;165263;165264;165265;165266;165267;165268;165269	165258			24	
GLPLVDDGGWNTVPISK	1	Unmodified	1766.9203	0.9202997	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								3	4	4	2	89.886	89.4	2;3	5.5841E-66	79612	160511_QHF_FH_JSI9i_1	236.28	224.41			0.88859	0.94289	14.143	13	0	Median	1.1582	0.94289	3.3381	3	0	Plateau	0.86494	1.0199	13.068	4	0	Median	0.83906	0.83403	6.276	4	0	Median	0.83876	0.90232	21.777	2	0	Median	1044400000	529210000	515230000	207470000	100050000	107410000	307240000	166860000	140380000	331530000	157680000	173850000	198200000	104610000	93589000	19819	2217	18781	121970;121971;121972;121973;121974;121975;121976;121977;121978;121979;121980;121981;121982	165270;165271;165272;165273;165274;165275;165276;165277;165278;165279;165280;165281;165282;165283;165284;165285;165286;165287;165288;165289;165290;165291;165292;165293;165294;165295	165288			26	
GLPNVQR	0	Unmodified	782.43989	0.43988615	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.12	4	5	4					3		3	4	5	4	22.55	20.023	2	0.005487	16751	160511_QHF_FH_JSI12i_3	94.669	16.92			0.95216	0.96931	20.738	14	2	Median	1.1058	0.88538	10.829	3	1	Median	0.95191	1.1279	26.209	4	1	Median	0.93789	0.93162	10.911	3	0	Median	0.84879	0.9405	16.613	4	0	Median	2073900000	1068100000	1005900000	395380000	182120000	213270000	484600000	242120000	242480000	460300000	228680000	231620000	733650000	415140000	318510000	19820	576	18782	121983;121984;121985;121986;121987;121988;121989;121990;121991;121992;121993;121994;121995;121996;121997;121998	165296;165297;165298;165299;165300;165301;165302;165303;165304;165305;165306;165307;165308;165309;165310;165311;165312;165313;165314;165315;165316;165317	165317			22	
GLPNVQRSDYLNTFEFMDK	1	Unmodified	2273.0787	0.078667612	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			87.626	86.486	3	0.0036006	72278	160511_QHF_FH_JSI10i_3	48.053	38.957			0.64623	0.7872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64623	0.7872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6437900	5279400	1158500	0	0	0	6437900	5279400	1158500	0	0	0	0	0	0	19821	576	18783	121999	165318	165318			1	
GLPPPPR	0	Unmodified	732.42826	0.42825883	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	20.593	20.002	2	0.016012	16860	160511_QHF_FH_JSI9i_1	63.642	28.937			1.1548	1.2369	19.377	3	1	Plateau	1.5202	1.2369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4583	1.4225	NaN	1	0	Median	0.91446	0.96998	NaN	1	0	Median	109730000	53132000	56593000	21155000	8752600	12403000	0	0	0	43456000	20139000	23318000	45114000	24241000	20872000	19822	2670;2501	18784	122000;122001;122002	165319;165320;165321	165321			3	
GLPQSTISFDGIYANMR	0	Unmodified	1868.9091	0.90908309	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.238	86.248	2	7.6564E-05	74523	160511_QHF_FH_JSI12i_2	82.362	68.204			0.84633	0.9648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84633	0.9648	NaN	1	0	Median	10202000	5642200	4560000	0	0	0	0	0	0	0	0	0	10202000	5642200	4560000	19823	4302	18785	122003	165322	165322			1	
GLPSPYNMSSAPGSR	0	Unmodified	1519.7089	0.70892672	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.52	3	4	3					3		2	2	5	4	51.244	49.28	2	2.1141E-07	42504	160511_QHF_FH_JSI11i_2	140.14	133.61			1.0786	1.1078	13.439	8	2	Median	1.0461	0.89376	NaN	1	0	Median	0.72383	0.86815	NaN	1	0	Median	1.1833	1.1575	4.0125	3	1	Median	0.98493	1.0905	11.441	3	1	Median	591680000	295600000	296080000	87946000	45393000	42552000	74588000	42195000	32392000	181950000	82311000	99639000	247190000	125700000	121500000	19824	1085	18786	122004;122005;122006;122007;122008;122009;122010;122011;122012;122013;122014;122015;122016	165323;165324;165325;165326;165327;165328;165329;165330;165331;165332;165333;165334;165335;165336;165337;165338;165339	165333			17	
GLPSVHAFNTFFFTK	1	Unmodified	1711.8722	0.8722273	5190	Q9P0U3	SENP1	Sentrin-specific protease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	90.073	85.182	3	6.2046E-24	42430	160513_QHF_FH_JSI9Kac_6	198.87	158.07			1.084	1.0722	51.305	6	3	Median	2.016	1.6612	93.697	2	1	Median	0.73776	0.83552	NaN	1	0	Median	1.0753	0.99505	NaN	1	0	Median	1.284	1.3547	22.53	2	2	Median	416580000	130040000	286540000	221360000	45967000	175390000	23273000	13727000	9545400	61221000	20879000	40342000	110730000	49462000	61265000	19825	5190	18787	122017;122018;122019;122020;122021;122022;122023	165340;165341;165342;165343;165344;165345	165343			6	
GLPVSGTKPDLIER	1	Unmodified	1480.8249	0.82494275	5399	Q9ULH7	MKL2	MKL/myocardin-like protein 2	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		49.229	48.445	3	0.01425	42857	160511_QHF_FH_JSI11i_3	58.831	48.55			0.76581	0.78485	12.891	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63491	0.71647	NaN	1	0	Median	0.9237	0.85976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129110000	73256000	55856000	0	0	0	31454000	19877000	11577000	97658000	53379000	44279000	0	0	0	19826	5399	18788	122024;122025	165346	165346			0	
GLPWSCSADEVMR	0	Unmodified	1506.6595	0.65953368	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	66.403	65.719	2	3.2491E-05	57348	160511_QHF_FH_JSI11i_2	117.52	103.93			0.84499	0.85905	21.178	5	2	Median	NaN	NaN	NaN	0	0	Median	0.66315	0.8169	NaN	1	0	Median	0.82487	0.82415	5.8656	2	0	Median	1.0551	1.1365	22.293	2	2	Median	235840000	117440000	118400000	0	0	0	41739000	23446000	18293000	127090000	62579000	64513000	67007000	31416000	35590000	19827	1864	18789	122026;122027;122028;122029;122030;122031	165347;165348;165349;165350;165351;165352;165353	165350			7	
GLPWSCSADEVQR	0	Unmodified	1503.6776	0.67762659	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.4	4.88	2		2				1				1	2	2	51.993	51.876	2	9.1391E-07	44468	160511_QHF_FH_JSI12i_3	128.81	115.72			1.1686	1.121	25.351	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.029	0.93705	NaN	1	0	Median	1.3271	1.3411	NaN	1	0	Median	137670000	68058000	69608000	0	0	0	0	0	0	51818000	28052000	23767000	85847000	40006000	45841000	19828	1383	18790	122032;122033;122034;122035;122036	165354;165355;165356;165357;165358	165357			5	
GLPWTLAK	1	Unmodified	884.51199	0.51198846	3108	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			64.168	62.855	2	0.0042007	52746	160511_QHF_FH_JSI10i_3	75.854	38.834			0.68368	0.76284	15.476	3	1	Plateau	0.76358	0.63258	13.243	2	1	Median	0.68368	0.78306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184920000	101600000	83327000	111340000	57902000	53443000	73580000	43696000	29884000	0	0	0	0	0	0	19829	3108	18791	122037;122038;122039;122040	165359;165360;165361;165362;165363	165360			5	
GLQAIPLSVDLWIHYINFLK	1	Unmodified	2339.3042	0.30417452	3320	Q86UA1	PRPF39	Pre-mRNA-processing factor 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		99.491	92.053	3	7.0337E-14	52172	160513_QHF_FH_JSI9Kac_6	129.43	107			0.82721	0.83704	53.544	2	0	Median	0.6651	0.57321	NaN	1	0	Median	1.0288	1.2223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	229360000	134720000	94642000	108220000	68375000	39847000	121140000	66341000	54795000	0	0	0	0	0	0	19830	3320	18792	122041;122042;122043	165364;165365;165366;165367;165368	165365			5	
GLQAPAGEPTQEASGVAAAK	1	Unmodified	1851.9327	0.9326553	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.639	41.984	2	4.92E-26	37631	160511_QHF_FH_JSI10i_1	183	169.09			0.84759	0.95136	9.0664	4	0	Linear	1.1043	0.89634	NaN	1	0	Median	0.78611	0.92681	NaN	1	0	Median	0.9968	0.97657	NaN	1	0	Median	1.0331	1.1022	NaN	1	0	Median	398900000	195630000	203270000	82239000	39468000	42772000	113320000	59504000	53814000	110190000	51365000	58827000	93146000	45290000	47856000	19831	1406	18793	122044;122045;122046;122047	165369;165370;165371;165372;165373;165374;165375;165376;165377	165374			9	
GLQAQIASSGLTVEVDAPK	1	Unmodified	1883	6.5851E-06	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.881	8	2	4							1	3	3	7	72.888	72.35	2;3	2.7921E-25	65712	160511_QHF_FH_JSI11i_1	182.57	168.67			0.99006	0.97482	22.615	11	5	Median	1.1016	0.91264	NaN	1	0	Median	0.63652	0.74384	21.03	3	2	Median	0.99006	0.97482	25.346	3	2	Median	1.109	1.2189	13.894	4	1	Median	804310000	443200000	361110000	85308000	59252000	26056000	303620000	183270000	120350000	186020000	72476000	113540000	229360000	128200000	101160000	19832	842	18794	122048;122049;122050;122051;122052;122053;122054;122055;122056;122057;122058;122059;122060;122061	165378;165379;165380;165381;165382;165383;165384;165385;165386;165387;165388;165389;165390;165391;165392;165393;165394;165395;165396;165397	165381			20	
GLQDSIRK	1	Unmodified	915.51378	0.51377937	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							3	1	2	1	14.437	13.891	2;3	0.001822	11226	160511_QHF_FH_JSI11i_3	60.91	14.484			14.379	12.152	60.725	5	5	Median	11.282	9.0419	34.182	2	2	Median	10.732	12.152	NaN	1	1	Median	29.228	27.738	NaN	1	1	Median	28.139	28.763	NaN	1	1	Median	4999400000	320530000	4678900000	2623000000	190230000	2432800000	739460000	67931000	671530000	1346000000	50394000	1295600000	291010000	11979000	279030000	19833	1085	18795	122062;122063;122064;122065;122066;122067;122068	165398;165399;165400;165401;165402;165403;165404	165399			7	
GLQDVLR	0	Unmodified	799.4552	0.45520186	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	6	5	1	2				3	1		3	2	3	4	44.542	41.044	2	6.0798E-09	35291	160511_QHF_FH_JSI12i_2	158.12	33.23			1.0407	1.0828	16.591	11	3	Median	1.1273	0.93946	32.428	3	2	Plateau	0.88627	1.0509	11.877	2	0	Median	1.1034	1.0766	1.3175	2	0	Median	0.98505	1.0822	6.0789	4	1	Median	2801900000	1454900000	1347000000	327750000	146720000	181030000	470670000	240900000	229780000	523780000	245090000	278690000	1479700000	822180000	657480000	19834	1494;3835	18796	122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080	165405;165406;165407;165408;165409;165410;165411;165412;165413;165414;165415;165416;165417;165418;165419	165407			15	
GLQEFLDR	0	Unmodified	976.49779	0.49779495	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.2	4.92		1	3					1			2	2	1	56.794	54.068	2	9.3583E-05	45099	160511_QHF_FH_JSI10i_3	130.56	82.058			1.0033	1.0154	39.551	5	2	Median	NaN	NaN	NaN	0	0	Median	0.57311	0.66703	49.023	2	1	Median	1.203	1.1792	21.157	2	1	Median	1.0033	1.0216	NaN	1	0	Median	1150900000	619900000	530990000	0	0	0	276670000	158030000	118630000	465990000	244030000	221960000	408230000	217840000	190390000	19835	558	18797	122081;122082;122083;122084;122085	165420;165421;165422;165423;165424;165425;165426;165427	165422			8	
GLQEGYENSR	0	Unmodified	1151.5207	0.52071524	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.457	13.911	2	0.0013026	11157	160511_QHF_FH_JSI11i_1	71.349	25.631			0.60343	0.69135	10.651	3	3	Plateau	0.81624	0.69135	NaN	1	1	Median	0.65186	0.77393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58806	0.62553	NaN	1	1	Median	104610000	58102000	46504000	29714000	14608000	15106000	37414000	21034000	16380000	0	0	0	37478000	22460000	15019000	19836	4582	18798	122086;122087;122088;122089	165428;165429;165430;165431	165428			4	
GLQELKAK	2	Acetyl (K)	927.53893	0.53893149	1433	P35270	SPR	Sepiapterin reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	41.038	31.156	2	2.1615E-06	18874	160513_QHF_FH_JSI11Kac_4	147.19	38.173			0.28728	0.28119	53.16	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68535	0.81313	NaN	1	1	Median	0.28728	0.28119	NaN	1	1	Median	0.45981	0.50086	NaN	1	1	Median	19563000	18143000	1420100	0	0	0	3584200	3219800	364420	12183000	11376000	806810	3795700	3546800	248830	19837	1433	18799	122090;122091;122092	165432;165433;165434	165433	1393		3	
GLQEVGLPLHR	0	Unmodified	1217.6881	0.68805534	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							3	3	2	1	50.248	49.237	2;3	8.6566E-07	43447	160511_QHF_FH_JSI11i_3	116.55	74.545			0.93124	0.98608	8.7519	9	2	Median	1.3108	1.0782	5.9137	3	1	Median	0.80428	0.94066	8.3012	3	0	Median	0.97481	0.96491	11.126	2	1	Median	0.93124	0.95642	NaN	1	0	Median	1620700000	806220000	814460000	249240000	110970000	138270000	422210000	231500000	190710000	561840000	254780000	307060000	387390000	208980000	178420000	19838	989	18800	122093;122094;122095;122096;122097;122098;122099;122100;122101	165435;165436;165437;165438;165439;165440;165441;165442;165443;165444;165445;165446	165435			11	
GLQHPNIVR	0	Unmodified	1032.5829	0.58286199	4714	Q9H4A3;Q96J92	WNK1;WNK4	Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4	no	no	0	0	0	0		By MS/MS			3	0			1								1			20.929	19.758	3	0.00053311	16204	160511_QHF_FH_JSI10i_3	65.465	50.132			1.2553	1.4526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2553	1.4526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98548000	43827000	54721000	0	0	0	98548000	43827000	54721000	0	0	0	0	0	0	19839	4714	18801	122102	165447;165448	165448			2	
GLQLPAPLLDSMVEVHNK	1	Unmodified	1960.0452	0.045182639	385	O43824	GTPBP6	Putative GTP-binding protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	96.927	96.943	3	2.0551E-07	84047	160511_QHF_FH_JSI12i_3	113.88	98.728			0.82155	0.81813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82155	0.81813	NaN	1	1	Median	60885000	27119000	33766000	0	0	0	0	0	0	0	0	0	60885000	27119000	33766000	19840	385	18802	122103	165449	165449			1	
GLQNGVPGLR	0	Unmodified	1009.5669	0.56687757	4813	Q9H9P8	L2HGDH	L-2-hydroxyglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.404	38.225	2	0.004287	32558	160511_QHF_FH_JSI12i_3	66.429	35.926			1.9953	1.9959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9953	1.9959	NaN	1	1	Median	28157000	8464100	19693000	0	0	0	0	0	0	0	0	0	28157000	8464100	19693000	19841	4813	18803	122104	165450	165450			1	
GLQNPFPQQMQNNSR	0	Unmodified	1757.8268	0.82675044	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		49.574	49.159	2	0.0095561	44501	160511_QHF_FH_JSI11i_1	48.004	31.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19842	429	18804	122105	165451	165451			1	
GLQQQNSDWYLK	1	Unmodified	1478.7154	0.7153923	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.53	3	5	5				3	2		4	4	3	7	53.183	50.173	2	2.3643E-128	42998	160511_QHF_FH_JSI12i_2	286.08	281.63			1.0442	1.1198	25.552	14	7	Median	1.2535	1.0498	35.301	4	3	Median	0.82015	0.99258	19.385	4	1	Median	0.9482	0.96766	NaN	1	0	Median	1.2362	1.3221	20.473	5	3	Median	2857200000	1479400000	1377800000	562810000	279940000	282860000	800850000	445760000	355100000	386090000	198970000	187120000	1107400000	554700000	552740000	19843	1600	18805	122106;122107;122108;122109;122110;122111;122112;122113;122114;122115;122116;122117;122118;122119;122120;122121;122122;122123	165452;165453;165454;165455;165456;165457;165458;165459;165460;165461;165462;165463;165464;165465;165466;165467;165468;165469;165470;165471;165472;165473;165474;165475;165476;165477;165478	165454			27	
GLQSFVQCQPFER	0	Unmodified	1594.7562	0.75621126	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			66.025	65.19	2	0.0005442	57828	160511_QHF_FH_JSI10i_2	84.479	69.789			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19844	3290	18806	122124	165479	165479			1	
GLQSGVDIGVK	1	Unmodified	1071.5924	0.59242362	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0			By MS/MS		14	0							2					2		52.177	41.443	2	3.5729E-12	24177	160513_QHF_FH_JSI11Kac_4	140.49	97.887			0.74929	0.72849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74929	0.72849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9987900	5602300	4385600	0	0	0	0	0	0	9987900	5602300	4385600	0	0	0	19845	4268	18807	122125;122126	165480;165481	165481			2	
GLQSIFQEQGMAESVHTWQDHGYLATYTNK	1	Unmodified	3438.5939	0.59390354	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.71	5.87			5						2	3	3	1		89.726	87.112	4	2.6007E-78	40700	160513_QHF_FH_JSI9Kac_6	195.01	182.52			1.0215	0.95804	16.9	7	0	Median	1.6609	1.4064	21.958	3	0	Plateau	0.7188	0.85433	9.4618	3	0	Plateau	1.0215	0.95804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	552890000	298090000	254800000	197330000	82462000	114870000	213610000	132140000	81476000	141950000	83491000	58456000	0	0	0	19846	1784	18808	122127;122128;122129;122130;122131;122132;122133	165482;165483;165484;165485;165486;165487;165488;165489;165490;165491;165492;165493	165492			11	
GLQSYYAVAHAVTER	0	Unmodified	1663.8318	0.83181904	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	2	2	1		65.81	58.877	2;3	2.1088E-09	32337	160513_QHF_FH_JSI10Kac_6	101.96	89.811			0.95057	0.95492	16.014	4	2	Median	0.99877	0.82201	20.586	2	2	Median	0.8621	1.0134	NaN	1	0	Median	1.02	0.95903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	292880000	140550000	152330000	149900000	69925000	79971000	79454000	43106000	36348000	63529000	27517000	36011000	0	0	0	19847	1737	18809	122134;122135;122136;122137;122138	165494;165495;165496;165497;165498;165499	165499			6	
GLQTSQDAR	0	Unmodified	974.47812	0.47812214	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	5.82	4	4	2		2	3	3	1		3	5	6	5	7.8509	3.9536	2	2.2525E-56	3165	160513_QHF_FH_JSI10Kac_3	229.44	162.64			0.98987	1.0042	9.5938	19	1	Median	1.1313	0.9856	5.9722	3	0	Median	0.81117	0.90853	4.273	5	0	Linear	1.1118	1.1154	14.962	6	1	Median	0.97388	1.0613	3.8945	5	0	Median	30523000000	15288000000	15235000000	7198500000	3195800000	4002700000	8082300000	4418000000	3664300000	8051900000	4035000000	4016900000	7190100000	3639100000	3551000000	19848	1297	18810	122139;122140;122141;122142;122143;122144;122145;122146;122147;122148;122149;122150;122151;122152;122153;122154;122155;122156;122157	165500;165501;165502;165503;165504;165505;165506;165507;165508;165509;165510;165511;165512;165513;165514;165515;165516;165517;165518;165519;165520;165521;165522;165523;165524;165525;165526;165527;165528	165526			28	
GLQTSQDARFYALSASFEPFSNK	1	Unmodified	2563.2343	0.23431663	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			89.114	88.004	3	1.4165E-07	73528	160511_QHF_FH_JSI10i_3	89.668	85.482			0.34779	0.40595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34779	0.40595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18261000	16438000	1823300	0	0	0	18261000	16438000	1823300	0	0	0	0	0	0	19849	1297	18811	122158	165529	165529			1	
GLQTVHINENFAK	1	Unmodified	1469.7627	0.76267685	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	45.861	45.716	2;3	1.0688E-12	39075	160511_QHF_FH_JSI12i_3	116.63	93.627			1.1749	1.1874	70.841	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9179	1.8049	28.326	2	2	Median	0.87735	0.88711	66.11	3	3	Median	1037700000	532330000	505400000	0	0	0	0	0	0	184440000	67585000	116850000	853290000	464740000	388550000	19850	2443	18812	122159;122160;122161;122162;122163;122164	165530;165531;165532;165533;165534;165535;165536	165536			7	
GLQVDLQSDGAAAEDIVASEQSLGQK	1	Unmodified	2628.2879	0.28786834	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	90.485	90.057	3	6.7782E-21	81997	160511_QHF_FH_JSI12i_1	119.87	117.22			0.68611	0.79641	22.957	5	1	Median	1.1876	0.98997	NaN	1	0	Median	0.68611	0.79641	NaN	1	0	Median	0.66709	0.65312	NaN	1	0	Median	0.67962	0.72058	33.263	2	1	Median	269810000	161110000	108710000	23228000	9374300	13854000	71030000	41267000	29763000	45269000	29631000	15639000	130280000	80833000	49452000	19851	1409	18813	122165;122166;122167;122168;122169	165537;165538;165539;165540;165541;165542;165543;165544;165545;165546	165541			10	
GLQVLMGR	0	Unmodified	872.49021	0.49020716	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			47.402	46.023	2	0.0012167	37823	160511_QHF_FH_JSI9i_3	92.467	47.856			0.95265	0.77227	27.345	3	1	Plateau	0.95265	0.77227	NaN	1	0	Median	0.49338	0.58713	31.538	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95959000	57641000	38317000	38640000	20718000	17922000	57319000	36923000	20395000	0	0	0	0	0	0	19852	3229;4066	18814	122170;122171;122172	165547;165548;165549	165548			3	
GLQVRPAPLSAELQAALAMEPTPGGVK	1	Unmodified	2700.4633	0.46327071	1801	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			100.83	100.64	3	3.7421E-09	83286	160511_QHF_FH_JSI10i_3	67.496	60.465			1.5775	1.5084	23.892	2	2	Median	1.5459	1.2739	NaN	1	1	Median	1.6098	1.786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71116000	20470000	50647000	41869000	12972000	28897000	29247000	7497400	21750000	0	0	0	0	0	0	19853	1801	18815	122173;122174	165550;165551;165552	165550			3	
GLQVYIR	0	Unmodified	847.49159	0.49158736	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.497								5	4	2	2	3	2	50.899	40.986	2	6.8406E-17	22564	160513_QHF_FH_JSI10Kac_6	163.34	65.311			1.154	1.0951	12.658	8	2	Median	1.2927	1.0987	15.032	2	1	Median	0.81238	0.9581	11.838	2	0	Median	1.206	1.17	2.2907	2	1	Median	1.0037	1.0898	18.127	2	0	Median	549150000	274420000	274730000	102620000	47023000	55597000	207600000	117790000	89802000	135010000	63652000	71355000	103920000	45953000	57971000	19854	4575	18816	122175;122176;122177;122178;122179;122180;122181;122182;122183	165553;165554;165555;165556;165557;165558;165559;165560;165561;165562;165563;165564;165565	165565			13	
GLQYLVLLSHAHSR	0	Unmodified	1592.8787	0.87870966	4431	Q9BU19	ZNF692	Zinc finger protein 692	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		71.112	62.814	3;4	0.00020229	34253	160513_QHF_FH_JSI10Kac_6	73.156	68.526			0.79723	0.9311	34.101	4	1	Median	1.1964	1.0204	NaN	1	1	Median	0.79723	0.9311	9.4685	2	0	Median	0.50423	0.49238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	194240000	108640000	85597000	17498000	6681800	10816000	150290000	86439000	63851000	26449000	15519000	10930000	0	0	0	19855	4431	18817	122184;122185;122186;122187	165566;165567;165568;165569;165570;165571	165570			5	
GLRDLEEEIQMLK	1	Unmodified	1572.8181	0.81814282	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		90.408	90.408	2	0.0024473	80499	160511_QHF_FH_JSI11i_3	71.085	30.495			0.57116	0.5327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57116	0.5327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38237000	23052000	15185000	0	0	0	0	0	0	38237000	23052000	15185000	0	0	0	19856	3395	18818	122188	165572	165572			1	
GLRFEEAPDYMYLR	0	Unmodified	1758.8399	0.83994089	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			71.845	70.389	3	0.00039688	58928	160511_QHF_FH_JSI10i_3	63.185	54.801			0.68058	0.77813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68058	0.77813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36515000	22449000	14066000	0	0	0	36515000	22449000	14066000	0	0	0	0	0	0	19857	1633	18819	122189;122190	165573;165574	165574			2	
GLSASLPDLDSENWIEVK	1	Unmodified	1971.9789	0.97893679	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	98.109	97.996	2	1.489E-09	88912	160511_QHF_FH_JSI12i_1	162.32	125.47			0.57189	0.63878	20.169	5	2	Median	NaN	NaN	NaN	0	0	Median	0.51766	0.59405	13.338	2	1	Median	0.5971	0.57793	14.157	2	1	Median	0.8147	0.86881	NaN	1	0	Median	114420000	70266000	44151000	0	0	0	53539000	34038000	19500000	37652000	24851000	12801000	23227000	11377000	11850000	19858	3132	18820	122191;122192;122193;122194;122195	165575;165576;165577;165578;165579;165580;165581	165578			7	
GLSASYLEPDRYDEEEEGEESISLAAIK	1	Unmodified	3099.4408	0.44079975	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	85.02	84.848	3	1.489E-09	73694	160511_QHF_FH_JSI12i_3	71.06	64.899			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12390000	12390000	0	0	0	0	0	0	0	0	0	0	12390000	12390000	0	19859	3778	18821	122196	165582	165582			1	
GLSAVRDFAR	0	Unmodified	1090.5883	0.5883413	3360	Q86WK7	AMIGO3	Amphoterin-induced protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	38.141	37.697	2	0.0005473	33762	160511_QHF_FH_JSI11i_1	87.323	30.042			1.0658	1.0877	16.426	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99443	0.96844	NaN	1	0	Median	1.1423	1.2217	NaN	1	0	Median	1095200000	545920000	549240000	0	0	0	0	0	0	733760000	348670000	385090000	361390000	197250000	164150000	19860	3360	18822	122197;122198	165583	165583			1	
GLSDEQIHTILQVLGHVAK	1	Unmodified	2057.1269	0.12693843	3984	Q96BH1	RNF25	E3 ubiquitin-protein ligase RNF25	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	101.41	101.34	4	3.9195E-06	83966	160511_QHF_FH_JSI10i_3	77.221	67.563			0.87617	0.93492	14.4	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88718	1.0351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8653	0.84441	NaN	1	0	Median	165380000	84651000	80726000	0	0	0	37625000	18938000	18687000	0	0	0	127750000	65713000	62039000	19861	3984	18823	122199;122200	165584	165584			1	
GLSDFLGVISDTFAPSPDK	1	Unmodified	1964.9731	0.97312313	5061	Q9NW68	BSDC1	BSD domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.53	102.49	2;3	2.0758E-09	89309	160511_QHF_FH_JSI12i_3	115.34	91.54			0.89656	1.0011	37.242	3	1	Median	NaN	NaN	NaN	0	0	Median	0.89656	1.0011	NaN	1	0	Median	0.56123	0.5326	NaN	1	0	Median	1.0173	1.0286	NaN	1	1	Median	130910000	73404000	57510000	0	0	0	21140000	11834000	9305800	24797000	14661000	10135000	84978000	46909000	38069000	19862	5061	18824	122201;122202;122203	165585;165586;165587	165587			2	
GLSEAAGQTAQMLER	0	Unmodified	1560.7566	0.75660519	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.67	0.471	1	2								1	1		1	55.444	54.424	2	8.1769E-17	46525	160511_QHF_FH_JSI12i_2	125.54	94.744			0.93732	0.79225	NaN	1	1	Median	0.93732	0.79225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29296000	15253000	14043000	29296000	15253000	14043000	0	0	0	0	0	0	0	0	0	19863	662	18825	122204;122205;122206	165588;165589;165590	165588			3	
GLSEDTTEETLK	1	Unmodified	1321.6249	0.62490554	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	5.62	4	6	3		3	5	2	1		5	7	5	7	35.618	30.32	2	3.0092E-195	5991	160513_QHF_FH_JSI9Kac_3	323.8	303.81			1.0623	1.0298	19.895	21	4	Median	1.1449	0.96662	4.4049	5	1	Median	1.0354	1.2182	16.853	6	0	Median	1.0455	1.0324	37.479	4	1	Median	0.98349	1.0494	16.795	6	2	Median	17722000000	9006000000	8716500000	3729000000	1566900000	2162100000	4986600000	2967700000	2018900000	4361300000	2114100000	2247200000	4645600000	2357300000	2288300000	19864	1154	18826	122207;122208;122209;122210;122211;122212;122213;122214;122215;122216;122217;122218;122219;122220;122221;122222;122223;122224;122225;122226;122227;122228;122229;122230	165591;165592;165593;165594;165595;165596;165597;165598;165599;165600;165601;165602;165603;165604;165605;165606;165607;165608;165609;165610;165611;165612;165613;165614;165615;165616;165617;165618;165619;165620;165621;165622;165623;165624;165625;165626;165627;165628;165629;165630;165631;165632;165633;165634;165635;165636	165614			46	
GLSEDVSISK	1	Unmodified	1033.5292	0.52915466	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.02	3					3	2			1	2	3	2	40.163	33.984	2	7.8421E-10	30685	160511_QHF_FH_JSI12i_1	137.69	84.908			0.89792	0.96756	35.663	8	1	Median	1.9419	1.6018	NaN	1	1	Median	0.6141	0.68789	54.265	2	0	Median	0.9117	0.88199	22.438	3	0	Median	0.93889	0.98102	7.9725	2	0	Median	427040000	185940000	241100000	93728000	33244000	60484000	3570000	2095200	1474700	148190000	63120000	85068000	181550000	87482000	94072000	19865	2609	18827	122231;122232;122233;122234;122235;122236;122237;122238	165637;165638;165639;165640;165641;165642	165637			6	
GLSFFAFEHSEEYQQAQHK	1	Unmodified	2282.0392	0.039245638	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									4	1	2	1		72.438	64.177	3;4	5.084E-26	35273	160513_QHF_FH_JSI10Kac_6	158.45	146.15			0.92171	0.93611	16.644	4	0	Median	1.2046	1.0413	NaN	1	0	Median	0.7029	0.83533	1.0511	2	0	Median	1.2127	1.1657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174360000	98036000	76327000	45854000	20066000	25788000	111530000	69174000	42357000	16978000	8796200	8181700	0	0	0	19866	4352	18828	122239;122240;122241;122242	165643;165644;165645;165646	165646			4	
GLSFHPK	1	Unmodified	784.42317	0.42317345	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		18.04	17.476	2	0.0062237	14400	160511_QHF_FH_JSI11i_3	92.467	68.943			1.0036	1.0662	12.36	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84053	0.977	NaN	1	1	Median	1.1982	1.1636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	925290000	344640000	580650000	0	0	0	335490000	124670000	210820000	589800000	219970000	369830000	0	0	0	19867	1805	18829	122243;122244	165647;165648	165647			2	
GLSFLEVK	1	Unmodified	891.50657	0.50656873	3638	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	65.118	64.051	2	0.0033453	55152	160511_QHF_FH_JSI12i_2	73.248	36.228			0.72816	0.85309	6.7762	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64844	0.81318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81767	0.89496	NaN	1	0	Median	36311000	19563000	16748000	0	0	0	14034000	7553300	6481200	0	0	0	22277000	12010000	10267000	19868	3638	18830	122245;122246	165649	165649			1	
GLSFLFPLLK	1	Unmodified	1133.6849	0.68486744	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	100.37	97.509	2	5.9548E-25	49723	160513_QHF_FH_JSI11Kac_6	185.84	94.796			0.81334	0.84379	15.339	12	0	Median	0.85548	0.69061	12.213	3	0	Median	0.71549	0.82863	18.681	3	0	Median	1.0535	0.99239	16.275	3	0	Plateau	0.94282	0.98169	8.4885	3	0	Plateau	7378400000	3834100000	3544300000	1359700000	717820000	641860000	1591200000	862180000	729050000	1412300000	686570000	725730000	3015200000	1567500000	1447600000	19869	2084	18831	122247;122248;122249;122250;122251;122252;122253;122254;122255;122256;122257;122258	165650;165651;165652;165653;165654;165655;165656;165657;165658;165659;165660;165661;165662;165663	165654			13	
GLSFSEATASNLVK	1	Unmodified	1422.7355	0.73545904	5275	Q9UEY8	ADD3	Gamma-adducin	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	66.673	65.373	2	1.1111E-07	56265	160511_QHF_FH_JSI12i_2	98.156	80.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19870	5275	18832	122259;122260	165664;165665	165665			2	
GLSGTAVLDLR	0	Unmodified	1100.619	0.61897272	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		4	1					1		1	1	2	2	62.476	60.021	2	4.4963E-23	52035	160511_QHF_FH_JSI11i_2	172.98	138.89			0.96772	0.93758	8.3945	6	1	Median	1.0008	0.85783	NaN	1	0	Median	0.70697	0.84938	NaN	1	0	Median	0.94916	0.93758	6.6541	2	0	Median	0.96772	1.0131	3.6385	2	1	Median	481740000	256410000	225330000	80289000	42467000	37822000	92112000	55481000	36631000	125560000	67910000	57648000	183780000	90551000	93228000	19871	4715	18833	122261;122262;122263;122264;122265;122266	165666;165667;165668;165669;165670;165671;165672	165668			7	
GLSHSPWAVK	1	Unmodified	1080.5716	0.5716286	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	1	3	2	4	31.452	29.945	2;3	2.6435E-07	24819	160511_QHF_FH_JSI12i_3	175.51	149.78			0.92258	0.95859	50.82	9	3	Median	1.0329	0.83387	NaN	1	0	Median	0.61065	0.7155	44.57	2	0	Median	1.068	1.0185	8.5768	2	1	Median	0.90962	0.9528	75.321	4	2	Median	2658400000	1420900000	1237500000	810390000	399850000	410540000	443620000	296240000	147390000	578480000	282580000	295890000	825960000	442240000	383710000	19872	4154	18834	122267;122268;122269;122270;122271;122272;122273;122274;122275;122276	165673;165674;165675;165676;165677;165678;165679;165680;165681;165682;165683;165684;165685	165683			12	
GLSHSPWAVKK	2	Acetyl (K)	1250.6772	0.6771563	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	45.188	35.937	2;3	4.9297E-11	19808	160513_QHF_FH_JSI10Kac_6	137.95	97.229			0.92723	0.89328	48.479	8	1	Median	0.8675	0.73702	2.8164	2	0	Median	1.4516	1.7133	90.698	2	1	Median	0.92723	0.88069	0.60258	2	0	Median	1.1008	1.1961	0.41985	2	0	Median	238940000	121270000	117660000	36162000	20025000	16137000	70196000	33510000	36686000	62328000	31694000	30634000	70250000	36043000	34207000	19873	4154	18835	122277;122278;122279;122280;122281;122282;122283;122284	165686;165687;165688;165689;165690;165691;165692;165693	165693	3059		8	
GLSHVAMGQFYEGIK	1	Unmodified	1635.8079	0.80791248	3600	Q8NBP0	TTC13	Tetratricopeptide repeat protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			61.361	59.84	3	0.00040136	49157	160511_QHF_FH_JSI9i_3	59.884	41.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19874	3600	18836	122285;122286;122287	165694;165695;165696	165696			3	
GLSIHTFHGNFFVR	0	Unmodified	1630.8368	0.83684484	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	71.707	63.035	3;4	1.0636E-46	34285	160513_QHF_FH_JSI10Kac_6	200.42	185.74			1.0241	1.2024	39.237	7	2	Median	1.6905	1.4401	38.844	2	1	Median	1.0237	1.2089	0.76077	2	0	Median	1.6269	1.6104	77.599	2	1	Median	0.96772	1.0253	NaN	1	0	Median	457900000	248290000	209610000	81120000	33214000	47906000	243260000	148840000	94414000	52242000	20411000	31831000	81283000	45823000	35459000	19875	700	18837	122288;122289;122290;122291;122292;122293;122294	165697;165698;165699;165700;165701;165702;165703;165704;165705	165704			8	
GLSIQNGVK	1	Unmodified	914.51853	0.5185304	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	27.707	27.022	2	0.00030341	23396	160511_QHF_FH_JSI9i_2	93.561	40.398			0.57615	0.57399	45.21	6	4	Median	0.71106	0.60903	NaN	1	1	Median	0.41026	0.47911	53.563	2	1	Median	0.71301	0.69776	35.994	2	1	Median	0.24792	0.27746	NaN	1	1	Median	243000000	159110000	83889000	38917000	21877000	17039000	82467000	55137000	27330000	87322000	54891000	32431000	34290000	27202000	7088200	19876	2137	18838	122295;122296;122297;122298;122299;122300	165706;165707;165708;165709;165710;165711	165709			6	
GLSKYGMK	2	Acetyl (K)	924.47389	0.47388839	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		40.629	30.539	2	0.044758	17503	160513_QHF_FH_JSI11Kac_5	57.177	25.948			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1342900	1342900	0	0	0	0	0	0	0	1342900	1342900	0	0	0	0	19877	4202	18839	122301	165712	165712			1	
GLSLGFLEK	1	Unmodified	962.54368	0.54368251	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.64	74.35	2	0.00088652	64521	160511_QHF_FH_JSI12i_3	83.783	13.784			1.0059	1.0118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0059	1.0118	NaN	1	1	Median	36047000	17838000	18209000	0	0	0	0	0	0	0	0	0	36047000	17838000	18209000	19878	4997	18840	122302	165713	165713			1	
GLSLGGSDGGASILDLHSGALSVGK	1	Unmodified	2267.1757	0.17573912	3130	Q6PK18	OGFOD3	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.346	86.194	3	7.8195E-17	74867	160511_QHF_FH_JSI12i_3	121.56	109.91			1.0324	1.1337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0324	1.1337	NaN	1	0	Median	71050000	34007000	37043000	0	0	0	0	0	0	0	0	0	71050000	34007000	37043000	19879	3130	18841	122303	165714;165715;165716	165716			3	
GLSLQIKPK	2	Acetyl (K)	1024.6281	0.62808085	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							4	4		1	2	3	2	66.274	55.463	2	3.047E-12	27937	160513_QHF_FH_JSI12Kac_5	160.88	79.583			0.87023	0.87732	65.628	8	1	Median	0.86797	0.70188	NaN	1	0	Median	0.71154	0.84041	9.7159	2	0	Median	0.87251	0.85504	98.626	3	1	Plateau	1.0424	1.1405	46.205	2	0	Median	58121000	29385000	28736000	5512900	3209300	2303600	10141000	5930500	4210300	26268000	11989000	14279000	16199000	8256100	7943200	19880	5618	18842	122304;122305;122306;122307;122308;122309;122310;122311	165717;165718;165719;165720;165721;165722;165723;165724;165725;165726;165727	165726	3503		11	
GLSLSAAR	0	Unmodified	773.43955	0.43955179	5456;5314	Q9UHW9;Q9UP95	SLC12A6;SLC12A4	Solute carrier family 12 member 6;Solute carrier family 12 member 4	no	no	0	0	0	0	By MS/MS				3	0			1							1				26.191	24.836	2	0.017429	20124	160511_QHF_FH_JSI9i_3	46.813	11.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19881	5314;5456	18843	122312	165728	165728			1	
GLSMHTFHGNFFVR	0	Unmodified	1648.7933	0.79326547	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	68.082	59.335	3;4	2.8139E-56	32293	160513_QHF_FH_JSI10Kac_6	208.27	184.6			1.0145	1.0596	6.7522	5	0	Median	1.2247	1.0343	NaN	1	0	Median	0.88636	1.0426	6.7075	2	0	Median	1.2481	1.1893	NaN	1	0	Median	1.0145	1.0596	NaN	1	0	Median	449410000	235790000	213620000	32165000	16192000	15973000	332350000	178960000	153380000	50405000	22180000	28225000	34496000	18461000	16035000	19882	701	18844	122313;122314;122315;122316;122317	165729;165730;165731;165732;165733;165734;165735	165733			7	
GLSNFTSTHLLLK	1	Unmodified	1429.7929	0.79291434	663	O95243	MBD4	Methyl-CpG-binding domain protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	65.436	64.616	3	0.0013431	53130	160511_QHF_FH_JSI9i_3	53.377	45.653			0.87736	0.75589	17.985	4	0	Median	0.93565	0.75886	NaN	1	0	Median	0.6759	0.74403	NaN	1	0	Median	0.8227	0.75294	NaN	1	0	Median	1.05	1.077	NaN	1	0	Median	175910000	94593000	81316000	39169000	23170000	15999000	29983000	17082000	12900000	40805000	19529000	21276000	65953000	34812000	31142000	19883	663	18845	122318;122319;122320;122321	165736;165737	165737			2	
GLSNLFLSCPIPK	1	Unmodified	1444.7748	0.77482144	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								3	3	2	85.508	85.099	2;3	3.1411E-10	75871	160511_QHF_FH_JSI11i_3	145.91	113.5			0.90728	0.98367	37.56	8	5	Median	NaN	NaN	NaN	0	0	Median	0.73689	0.83898	21.638	3	3	Median	0.81621	0.76708	51.86	3	2	Median	1.4401	1.4437	24.499	2	0	Median	320890000	158360000	162530000	0	0	0	86157000	46088000	40069000	93647000	50695000	42952000	141090000	61580000	79510000	19884	5650	18846	122322;122323;122324;122325;122326;122327;122328;122329	165738;165739;165740;165741;165742;165743;165744;165745;165746;165747	165739			10	
GLSPAQADSQFLENAK	1	Unmodified	1674.8213	0.82131394	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.301	57.649	2	6.9164E-40	52547	160511_QHF_FH_JSI12i_1	198.49	156.95			1.0394	1.0496	3.2702	4	0	Median	1.3205	1.1139	NaN	1	0	Median	0.90759	1.0592	NaN	1	0	Median	1.079	1.0401	NaN	1	0	Median	1.0012	1.0387	NaN	1	0	Median	253750000	125950000	127800000	64571000	30600000	33972000	47920000	25624000	22296000	61523000	37791000	23732000	79733000	31933000	47800000	19885	339	18847	122330;122331;122332;122333	165748;165749;165750;165751;165752;165753;165754	165751			7	
GLSQEGTGPPTSAGEGHSR	0	Unmodified	1823.8398	0.83981755	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		16.587	15.824	3	5.1446E-05	13182	160511_QHF_FH_JSI9i_2	66.606	55.562			0.89477	0.92633	34.907	2	2	Median	1.3543	1.1857	NaN	1	1	Median	0.59118	0.72372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41269000	23146000	18123000	18567000	7123600	11443000	22702000	16023000	6679800	0	0	0	0	0	0	19886	3009	18848	122334;122335;122336	165755;165756;165757	165755			3	
GLSQNQQIPQNSVTPR	0	Unmodified	1765.9071	0.90710925	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.527	34.922	2	6.0458E-40	31400	160511_QHF_FH_JSI11i_1	200.13	166.9			1.0457	1.0121	6.252	4	1	Median	1.1361	0.92551	NaN	1	1	Median	0.82549	0.98106	NaN	1	0	Median	1.1114	1.0441	NaN	1	0	Median	0.98385	1.0611	NaN	1	0	Median	139360000	64931000	74426000	16540000	4733000	11807000	36615000	22441000	14174000	49516000	20177000	29339000	36686000	17580000	19106000	19887	3819	18849	122337;122338;122339;122340	165758;165759;165760;165761;165762;165763;165764;165765	165759			8	
GLSQSALPYR	0	Unmodified	1090.5771	0.57710791	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.61	6.72	1	5	2					4	6	5	4	4	5	43.124	37.43	2	2.5637E-44	33063	160511_QHF_FH_JSI11i_3	222.42	155.39			0.8344	0.85773	13.322	18	7	Median	1.0588	0.91077	19.168	5	3	Median	0.7191	0.86314	7.7687	4	1	Median	0.8834	0.83684	8.3085	4	0	Median	0.78897	0.85229	13.54	5	3	Median	4529300000	2449600000	2079700000	950960000	436670000	514290000	880020000	563820000	316200000	1589000000	840540000	748430000	1109300000	608570000	500770000	19888	1995	18850	122341;122342;122343;122344;122345;122346;122347;122348;122349;122350;122351;122352;122353;122354;122355;122356;122357;122358	165766;165767;165768;165769;165770;165771;165772;165773;165774;165775;165776;165777;165778;165779;165780;165781;165782;165783;165784;165785;165786;165787;165788;165789;165790;165791;165792;165793	165766			28	
GLSSDNKPMVNLDK	2	Oxidation (M)	1532.7505	0.75045718	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	29.537	29.537	3	0.0038704	24801	160511_QHF_FH_JSI12i_3	48.467	40.216			1.1739	1.1272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1739	1.1272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54861000	23681000	31180000	0	0	0	0	0	0	54861000	23681000	31180000	0	0	0	19889	2117	18851	122359;122360	165794;165795	165795		1782	2	
GLSSDNKPMVNLDK	2	Unmodified	1516.7555	0.75554256	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.722	2	5	5							1	3	6	2	36.839	36.442	2;3	6.0402E-10	30928	160511_QHF_FH_JSI12i_3	142.1	115.97			0.77471	0.84662	29.035	12	4	Median	1.2212	1.0407	NaN	1	0	Median	0.70656	0.83449	4.3642	3	1	Plateau	0.84321	0.83807	41.458	6	3	Median	0.79034	0.7914	9.7571	2	0	Median	2526100000	1406000000	1120100000	195870000	102090000	93785000	373270000	210740000	162530000	1064500000	564100000	500390000	892510000	529110000	363400000	19890	2117	18851	122361;122362;122363;122364;122365;122366;122367;122368;122369;122370;122371;122372	165796;165797;165798;165799;165800;165801;165802;165803;165804;165805;165806;165807;165808;165809;165810;165811;165812;165813	165810			18	
GLSSDNKPMVNLDK	2	Acetyl (K);Oxidation (M)	1574.761	0.76102187	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						7					1	2	4	56.222	46.947	2;3	1.564E-05	24888	160513_QHF_FH_JSI12Kac_3	103.34	85.906			0.76643	0.81806	125.38	6	3	Median	NaN	NaN	NaN	0	0	Median	0.74726	0.88476	NaN	1	0	Median	0.7861	0.7564	NaN	1	0	Median	0.61264	0.66128	161.72	4	3	Median	16091000	8795100	7295600	0	0	0	3098400	1605300	1493000	1728400	1032500	695820	11264000	6157200	5106700	19891	2117	18851	122373;122374;122375;122376;122377;122378;122379	165814;165815;165816;165817;165818;165819;165820;165821	165817	2218	1782	8	
GLSSDNKPMVNLDK	2	Acetyl (K)	1558.7661	0.76610725	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	63.592	54.161	2	9.4098E-07	27576	160513_QHF_FH_JSI10Kac_3	110.08	79.205			0.90736	1.0303	13.105	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7946	0.93914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0361	1.1304	NaN	1	0	Median	16588000	9429200	7159000	0	0	0	7668800	4310800	3358000	1139600	1139600	0	7779900	3978900	3801000	19892	2117	18851	122380;122381;122382	165822;165823;165824;165825	165824	2218		4	
GLSSDNKPMVNLDKLK	3	Acetyl (K);Oxidation (M)	1815.94	0.94004887	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	1	0	1	2			By MS/MS		15	0								1				1		65.6	54.684	3	0.048971	29612	160513_QHF_FH_JSI11Kac_5	43.791	26.302			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4777900	4777900	0	0	0	0	0	0	0	4777900	4777900	0	0	0	0	19893	2117	18852	122383	165826	165826	2218	1782	1	
GLSSILDAAR	0	Unmodified	1001.5506	0.55055881	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				59.857	58.322	2	0.0010793	47893	160511_QHF_FH_JSI9i_3	92.838	62.671			0.96377	0.8028	NaN	1	1	Median	0.96377	0.8028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73149000	47047000	26102000	73149000	47047000	26102000	0	0	0	0	0	0	0	0	0	19894	3900	18853	122384	165827	165827			1	
GLSSLLCNFTK	1	Unmodified	1238.6329	0.63290823	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	80.815	80.097	2	1.3155E-47	71315	160511_QHF_FH_JSI11i_3	213.31	186			0.9764	0.91752	16.947	5	1	Median	1.0978	0.87976	NaN	1	0	Median	0.87588	1.054	19.617	2	1	Median	0.95959	0.88281	NaN	1	0	Median	1.1854	1.2196	NaN	1	0	Median	1191800000	614290000	577530000	236000000	106350000	129650000	317040000	176220000	140810000	360560000	187410000	173150000	278230000	144310000	133920000	19895	2094	18854	122385;122386;122387;122388;122389	165828;165829;165830;165831;165832;165833;165834;165835;165836;165837;165838;165839;165840;165841;165842;165843	165829			16	
GLSSLLYGSIPK	1	Unmodified	1233.6969	0.69688869	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.68		4	8					1	3	5	3	4	4	79.757	76.817	2;3	1.7756E-53	68289	160511_QHF_FH_JSI12i_3	221.52	195.08			0.98926	0.97275	23.169	16	1	Median	1.2859	1.0469	27.182	5	1	Median	0.95797	1.0845	30.28	3	0	Median	0.98155	0.93165	6.2448	4	0	Median	0.95877	0.92354	18.903	4	0	Median	4317000000	2046000000	2271000000	742130000	340950000	401180000	899900000	473350000	426550000	1063400000	499430000	563990000	1611500000	732290000	879260000	19896	1792	18855	122390;122391;122392;122393;122394;122395;122396;122397;122398;122399;122400;122401;122402;122403;122404;122405	165844;165845;165846;165847;165848;165849;165850;165851;165852;165853;165854;165855;165856;165857;165858;165859;165860;165861;165862;165863;165864;165865;165866;165867;165868;165869;165870;165871;165872;165873;165874;165875;165876;165877;165878;165879;165880;165881;165882;165883	165879			39	
GLSSMQQSLLQIIYSLLSHIDLSAAPAK	1	Unmodified	2983.6052	0.6052435	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.47	98.752	3;4	2.8017E-99	58430	160513_QHF_FH_JSI10Kac_6	218.98	205.57			0.76893	0.92181	14.683	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76893	0.92181	14.683	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	407580000	227350000	180240000	0	0	0	407580000	227350000	180240000	0	0	0	0	0	0	19897	625	18856	122406;122407	165884;165885;165886;165887	165884			4	
GLSTFPGAEHCLR	0	Unmodified	1443.6929	0.69288272	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	no	no	0	0	0	0				By MS/MS	1	0	1												1	39.067	38.462	3	0.050412	34971	160511_QHF_FH_JSI12i_1	14.03	5.2091			0.87405	0.90992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87405	0.90992	NaN	1	0	Median	35370000	23851000	11519000	0	0	0	0	0	0	0	0	0	35370000	23851000	11519000	19898	4188	18857	122408	165888	165888			1	
GLSTQAIWR	0	Unmodified	1030.556	0.55597854	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			50.198	48.612	2	0.0010356	39735	160511_QHF_FH_JSI9i_3	81.548	54.946			1.2247	1.207	17.641	2	2	Median	1.2906	1.0655	NaN	1	1	Median	1.1622	1.3674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114300000	61282000	53019000	70071000	37815000	32256000	44229000	23466000	20763000	0	0	0	0	0	0	19899	2654	18858	122409;122410	165889;165890	165890			2	
GLSVHTDMASVTK	1	Unmodified	1344.6708	0.6707503	182	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	37.27	37.107	2	8.7773E-07	32513	160511_QHF_FH_JSI11i_3	88.681	58.871			1.381	1.4367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.381	1.4367	NaN	1	1	Median	14426000	4495500	9930600	0	0	0	0	0	0	0	0	0	14426000	4495500	9930600	19900	182	18859	122411;122412	165891;165892;165893	165891			3	
GLSWQPPPYTPTPR	0	Unmodified	1595.8096	0.80962704	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	3	1	2	67.928	67.033	2	2.4638E-06	58040	160511_QHF_FH_JSI12i_3	127.83	111.97			1.1508	1.1576	27.189	6	1	Median	1.0604	0.9368	NaN	1	0	Median	0.76962	0.90534	22.493	2	1	Median	1.3588	1.3868	NaN	1	0	Median	1.3522	1.4321	17.821	2	0	Median	189460000	93355000	96108000	46130000	24010000	22120000	50604000	28108000	22496000	27924000	13942000	13982000	64805000	27295000	37510000	19901	3290	18860	122413;122414;122415;122416;122417;122418;122419	165894;165895;165896;165897;165898;165899;165900;165901;165902;165903;165904;165905	165904			12	
GLTAHGINIK	1	Unmodified	1022.5873	0.58727866	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.48			10						3	4	2	3	4	32.651	29.961	2;3	1.3735E-06	24944	160511_QHF_FH_JSI10i_3	118.5	81.474			0.98001	0.89177	19.932	13	2	Median	1.05	0.87132	6.2265	4	0	Median	0.75425	0.86243	4.7322	2	0	Median	1.0929	0.90812	10.656	3	0	Plateau	0.857	0.89086	35.938	4	2	Median	1090100000	576330000	513800000	267720000	140990000	126730000	184420000	119980000	64439000	255640000	117490000	138150000	382340000	197870000	184480000	19902	4819	18861	122420;122421;122422;122423;122424;122425;122426;122427;122428;122429;122430;122431;122432	165906;165907;165908;165909;165910;165911;165912;165913;165914;165915;165916;165917;165918;165919;165920;165921	165910			15	
GLTAQIQSFGR	0	Unmodified	1176.6251	0.62512073	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	50.235	49.623	2	3.4617E-05	43906	160511_QHF_FH_JSI11i_3	98.055	73.111			0.50841	0.47283	20.147	3	2	Plateau	0.88248	0.70532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50841	0.47283	NaN	1	0	Median	0.60873	0.60269	NaN	1	1	Median	96116000	54223000	41894000	30867000	15404000	15463000	0	0	0	38428000	21740000	16688000	26821000	17079000	9742000	19903	2574	18862	122433;122434;122435	165922;165923;165924	165922			3	
GLTAVSNNAGVDNFGLGLLLR	0	Unmodified	2100.1328	0.13275209	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	3.8	4.09		5	4						1	4	2	2	2	100.85	99.872	2;3	0	90705	160511_QHF_FH_JSI11i_3	469.17	421.61			1.0625	1.0708	19.403	10	0	Median	1.207	1.0194	17.154	4	0	Median	0.87459	1.0483	7.2749	2	0	Median	1.1914	1.1576	9.0366	2	0	Median	0.78227	0.83556	35.254	2	0	Median	1827500000	895150000	932390000	559890000	245760000	314140000	508130000	272670000	235460000	475570000	219250000	256320000	283940000	157480000	126470000	19904	1865	18863	122436;122437;122438;122439;122440;122441;122442;122443;122444;122445	165925;165926;165927;165928;165929	165925			3	
GLTEQEVETILDK	1	Unmodified	1473.7563	0.75625407	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	78	77.529	2	9.2427E-08	70643	160511_QHF_FH_JSI12i_1	161.99	126.34			0.92434	0.95742	50.319	3	2	Median	NaN	NaN	NaN	0	0	Median	0.56516	0.6893	65.911	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92434	0.95742	NaN	1	0	Median	291740000	185120000	106620000	0	0	0	217300000	142980000	74321000	0	0	0	74437000	42141000	32296000	19905	2455	18864	122446;122447;122448	165930;165931;165932	165930			3	
GLTGNNQTSQVK	1	Unmodified	1245.6313	0.63132832	5826				yes	yes	0	0	0	0	By MS/MS				2	0		1								1				71.06	70.206	2	0.0035784	62241	160511_QHF_FH_JSI9i_2	65.305	14.246	+		1.1868	1.0399	NaN	1	1	Median	1.1868	1.0399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125880000	52435000	73445000	125880000	52435000	73445000	0	0	0	0	0	0	0	0	0	19906	5826	18865	122449	165933	165933			1	
GLTIVGSVLEGTYLDK	1	Unmodified	1663.9033	0.90325265	5704	Q9Y666	SLC12A7	Solute carrier family 12 member 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.33	100.35	2	1.6497E-16	86972	160511_QHF_FH_JSI12i_3	116.54	92.157			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19907	5704	18866	122450	165934	165934			1	
GLTKEEVTRLKQRR	2	2 Acetyl (K)	1797.0221	0.022079431	437	O60675	MAFK	Transcription factor MafK	yes	yes	2	0	0	4	By MS/MS		By MS/MS		16	0									2	1		1		87.727	78.752	3	0.0038374	43618	160513_QHF_FH_JSI9Kac_6	49.31	18.348			1.0007	0.90906	25.252	2	0	Median	0.8757	0.76041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1434	1.0868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	587430000	302230000	285200000	353070000	178350000	174720000	0	0	0	234360000	123870000	110490000	0	0	0	19908	437	18867	122451;122452	165935;165936	165936	223;224		2	
GLTLAPGLSPARPLFGSDFEK	1	Unmodified	2172.1579	0.15790421	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				92.013	90.914	3	0.0016127	74451	160511_QHF_FH_JSI9i_3	47.68	33.776			1.2228	1.0454	NaN	1	1	Median	1.2228	1.0454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8022000	2010100	6011900	8022000	2010100	6011900	0	0	0	0	0	0	0	0	0	19909	3391	18868	122453	165937	165937			1	
GLTLIELWEGLTVDDVQK	1	Unmodified	2028.0779	0.077922555	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		8	4						8	4	4	7	5	101.28	97.872	2;3	4.9152E-104	49236	160513_QHF_FH_JSI12Kac_6	289.45	250.18			1.0435	0.94657	28.472	20	12	Median	1.1763	1.0244	13.336	4	2	Median	0.67667	0.79456	30.12	4	1	Median	1.0492	1.0353	31.84	7	5	Median	1.1535	1.2275	17.702	5	4	Median	2684700000	1366400000	1318300000	519330000	269740000	249590000	745870000	426330000	319540000	840720000	364700000	476020000	578810000	305620000	273190000	19910	1865	18869	122454;122455;122456;122457;122458;122459;122460;122461;122462;122463;122464;122465;122466;122467;122468;122469;122470;122471;122472;122473	165938;165939;165940;165941;165942;165943;165944;165945;165946;165947;165948;165949;165950;165951;165952;165953;165954;165955;165956;165957;165958;165959;165960;165961;165962	165959			25	
GLTMLDHEQVTPEDPGAQFLIR	0	Unmodified	2466.2213	0.2213091	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	86.779	86.227	2;3	4.972E-58	74927	160511_QHF_FH_JSI12i_3	215.98	212.58			0.99062	1.0462	7.4676	5	0	Median	1.2207	1.0347	NaN	1	0	Median	0.89914	1.1232	NaN	1	0	Median	0.99062	1.0028	NaN	1	0	Median	1.0356	1.1239	10.13	2	0	Median	1559300000	774260000	785020000	243610000	111380000	132230000	293850000	159290000	134550000	269440000	128000000	141440000	752380000	375580000	376800000	19911	5233	18870	122474;122475;122476;122477;122478;122479	165963;165964;165965;165966;165967;165968;165969;165970;165971;165972;165973;165974	165973			12	
GLTMLDHEQVTPEDPGAQFLIR	0	Oxidation (M)	2482.2162	0.21622373	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	77.708	77.201	3	1.3622E-08	66988	160511_QHF_FH_JSI12i_3	96.718	75.904			1.2557	1.175	45.011	2	1	Median	1.8417	1.6153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85616	0.8547	NaN	1	0	Median	78881000	38026000	40855000	17281000	3590900	13690000	0	0	0	0	0	0	61600000	34435000	27164000	19912	5233	18870	122480;122481;122482	165975;165976;165977	165977		2611	3	
GLTPPASYNLDDDQAAWENELQK	1	Unmodified	2574.1874	0.18742602	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	84.488	83.987	3	0.028692	76544	160511_QHF_FH_JSI12i_1	26.759	19.961			1.0315	1.1001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0315	1.1001	NaN	1	1	Median	22306000	7980500	14325000	0	0	0	0	0	0	0	0	0	22306000	7980500	14325000	19913	3395	18871	122483	165978	165978			1	
GLTPSQIGVILR	0	Unmodified	1252.7503	0.75032125	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.67	3	4	4					7	4	6	6	5	5	77.67	72.728	2	1.2016E-61	38401	160513_QHF_FH_JSI11Kac_6	218.6	160.75			0.93051	0.99077	13.135	21	0	Median	1.2567	1.0618	8.6537	5	0	Median	0.86655	1.0393	7.1076	6	0	Median	0.9711	0.9526	6.214	5	0	Median	0.84768	0.88768	15.775	5	0	Median	10237000000	5176700000	5060700000	2111900000	897790000	1214100000	2751200000	1453200000	1298000000	2557700000	1256900000	1300800000	2816600000	1568800000	1247800000	19914	1995	18872	122484;122485;122486;122487;122488;122489;122490;122491;122492;122493;122494;122495;122496;122497;122498;122499;122500;122501;122502;122503;122504;122505	165979;165980;165981;165982;165983;165984;165985;165986;165987;165988;165989;165990;165991;165992;165993;165994;165995;165996;165997;165998;165999;166000;166001;166002;166003;166004;166005;166006;166007;166008;166009;166010;166011;166012;166013;166014;166015;166016;166017;166018;166019;166020;166021;166022;166023;166024;166025;166026;166027;166028;166029;166030;166031;166032;166033;166034;166035;166036	166000			58	
GLTPTGMLPSGVLSGGK	1	Unmodified	1570.8389	0.83887826	2264	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.623	1	6	7							3	4	3	4	79.786	79.133	2	1.5316E-32	68379	160511_QHF_FH_JSI12i_2	150.49	124.37			0.85676	0.94284	67.583	8	4	Median	0.87086	0.73641	NaN	1	0	Median	0.80267	0.94284	13.19	4	2	Median	1.9395	1.9323	113.27	2	1	Median	3.1898	3.2386	NaN	1	1	Median	738290000	234420000	503870000	70997000	35839000	35158000	137830000	79667000	58161000	294080000	72291000	221790000	235390000	46626000	188760000	19915	2264	18873	122506;122507;122508;122509;122510;122511;122512;122513;122514;122515;122516;122517;122518;122519	166037;166038;166039;166040;166041;166042;166043;166044;166045;166046;166047;166048;166049;166050;166051;166052;166053	166040			16	
GLTQAFGGFLIWPDNKPAEEVVPASILLHSNIASLVK	2	Unmodified	3931.1248	0.12476017	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	97.766	88.446	4	7.9504E-55	50567	160513_QHF_FH_JSI11Kac_6	161.01	152.39			0.9101	0.95774	14.964	3	0	Median	1.1891	1.0077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7845	0.76096	NaN	1	0	Median	0.9101	0.95774	NaN	1	0	Median	298510000	129900000	168610000	124880000	47407000	77474000	0	0	0	100630000	45924000	54705000	72996000	36570000	36426000	19916	265	18874	122520;122521;122522	166054;166055	166054			2	
GLTQIQSR	0	Unmodified	901.49813	0.49812931	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	5.52		1	4					2		1	1	4	1	18.94	14.972	2	0.0035516	12628	160511_QHF_FH_JSI12i_3	71.692	39.757			1.0064	1.0132	11.282	5	1	Median	1.2482	1.0132	NaN	1	0	Median	1.0142	1.1361	NaN	1	0	Median	0.89978	0.8744	2.8811	2	1	Median	1.0064	1.0138	NaN	1	0	Median	200160000	110380000	89784000	2588000	1014000	1574000	29038000	14850000	14188000	85297000	46736000	38561000	83240000	47779000	35461000	19917	1892	18875	122523;122524;122525;122526;122527;122528;122529	166056;166057;166058;166059;166060;166061;166062;166063	166063			8	
GLTQKDLATK	2	Acetyl (K)	1115.6186	0.61863837	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	39.974	31.099	2	0.0044543	17479	160513_QHF_FH_JSI12Kac_3	71.349	23.066			0.47988	0.46754	52.76	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1225	1.3256	NaN	1	0	Median	0.47988	0.46754	NaN	1	0	Median	0.83964	0.90868	NaN	1	0	Median	11701000	6690400	5010900	0	0	0	3774700	1920800	1853900	4140600	2315800	1824800	3786000	2453800	1332200	19918	455	18876	122530;122531;122532	166064;166065;166066;166067;166068;166069	166066	231		6	
GLTSAGR	0	Unmodified	660.35549	0.35548781	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.92	1	4	4					2		3	3	3	2	5.9668	3.9821	2	0.00115	3352	160511_QHF_FH_JSI12i_3	123.99	18.72			0.81307	0.89299	15.529	11	1	Median	1.1877	1.0153	6.3697	3	0	Median	0.67936	0.83203	17.834	3	1	Median	0.79406	0.75189	9.5021	3	0	Plateau	0.73056	0.77682	21.53	2	0	Median	5896900000	3259300000	2637600000	995060000	477250000	517810000	1439100000	858630000	580450000	1834600000	1023200000	811420000	1628100000	900210000	727920000	19919	1951	18877	122533;122534;122535;122536;122537;122538;122539;122540;122541;122542;122543	166070;166071;166072;166073;166074;166075;166076;166077;166078;166079;166080;166081;166082;166083;166084;166085;166086	166086			17	
GLTSAGRK	1	Unmodified	788.45045	0.45045083	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	2	2		1	4.9027	0.54546	2	0.0023307	2295	160511_QHF_FH_JSI9i_3	81.191	9.4758			0.87187	0.93309	8.7701	5	0	Median	1.1058	0.91435	2.8682	2	0	Median	0.85303	0.99827	6.4226	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74229	0.82194	NaN	1	0	Median	549870000	268920000	280950000	161040000	65645000	95399000	385630000	201650000	183980000	0	0	0	3191400	1621100	1570300	19920	1951	18878	122544;122545;122546;122547;122548	166087;166088;166089;166090;166091;166092	166087			6	
GLTSVINQK	1	Unmodified	958.54475	0.54474515	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.15	6	5	5		3	3	5	4	3	7	7	10	10	36.43	31.377	2	5.3586E-54	26989	160511_QHF_FH_JSI11i_3	237.64	181.97			0.94133	1.0175	38.794	32	5	Median	1.1085	1.0132	13.636	5	0	Median	0.87993	0.96675	9.865	7	0	Median	1.0626	1.0544	49.565	10	2	Median	0.93492	1.0105	49.82	10	3	Median	96830000000	46237000000	50594000000	10456000000	4560200000	5896200000	14804000000	7347200000	7457100000	26985000000	12224000000	14761000000	44585000000	22106000000	22479000000	19921	864	18879	122549;122550;122551;122552;122553;122554;122555;122556;122557;122558;122559;122560;122561;122562;122563;122564;122565;122566;122567;122568;122569;122570;122571;122572;122573;122574;122575;122576;122577;122578;122579;122580;122581;122582	166093;166094;166095;166096;166097;166098;166099;166100;166101;166102;166103;166104;166105;166106;166107;166108;166109;166110;166111;166112;166113;166114;166115;166116;166117;166118;166119;166120;166121;166122;166123;166124;166125;166126;166127;166128;166129;166130;166131;166132;166133;166134;166135;166136;166137;166138;166139;166140;166141;166142;166143;166144;166145;166146;166147;166148;166149;166150;166151;166152;166153;166154;166155;166156;166157;166158;166159;166160;166161;166162;166163;166164;166165;166166;166167;166168;166169;166170;166171;166172	166095			80	
GLTSVINQKLK	2	Acetyl (K)	1241.7343	0.73433683	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.9	0.781							3	3	2		2	3	3	73.075	62.738	2	7.4758E-58	33962	160513_QHF_FH_JSI11Kac_6	218.94	155.38			0.32998	0.32879	146.36	7	1	Median	NaN	NaN	NaN	0	0	Median	1.0722	1.258	17.393	2	0	Median	0.26023	0.23828	165.48	3	1	Median	0.31646	0.34914	26.239	2	0	Median	100160000	78699000	21457000	0	0	0	5263400	2962600	2300800	82053000	65841000	16212000	12840000	9895500	2944300	19922	864	18880	122583;122584;122585;122586;122587;122588;122589;122590	166173;166174;166175;166176;166177;166178;166179;166180;166181	166173	559		9	
GLTTTGNSSLNSTSNTK	1	Unmodified	1681.8119	0.81187146	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.66	2					1				1	1	1		25.891	21.023	2	8.0485E-66	17981	160511_QHF_FH_JSI9i_1	234.82	207.34			1.283	1.1414	10.238	2	1	Median	1.29	1.0617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2761	1.2271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64219000	32129000	32089000	62474000	31525000	30950000	0	0	0	1744300	604540	1139800	0	0	0	19923	4161	18881	122591;122592;122593	166182;166183;166184;166185	166184			4	
GLTVDSILQTDDATLGK	1	Unmodified	1745.9047	0.90470922	2097	P78549	NTHL1	Endonuclease III-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				84.227	83.387	2	7.4871E-06	74213	160511_QHF_FH_JSI9i_1	125.54	111.31			1.0898	0.8883	NaN	1	0	Median	1.0898	0.8883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21410000	13344000	8065800	21410000	13344000	8065800	0	0	0	0	0	0	0	0	0	19924	2097	18882	122594	166186	166186			1	
GLTVPIASIDIPSGWDVEK	1	Unmodified	1996.0517	0.051707805	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								2	2	3	2	101.41	101.31	2;3	5.3442E-67	91867	160511_QHF_FH_JSI12i_1	227.34	181.42			0.9735	0.99804	29.565	9	0	Median	1.0741	0.90408	16.25	2	0	Median	0.62266	0.72385	45.426	2	0	Median	1.0371	1.0225	31.549	3	0	Median	0.94623	0.99441	8.3348	2	0	Median	1598200000	809690000	788540000	240250000	119150000	121100000	442860000	255050000	187800000	465370000	199570000	265800000	449750000	235910000	213840000	19925	3623	18883	122595;122596;122597;122598;122599;122600;122601;122602;122603	166187;166188;166189;166190;166191;166192;166193;166194;166195;166196;166197	166192			11	
GLTVQQWDALYTDLPNR	0	Unmodified	1988.9956	0.99558991	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.386	2	9								2	5	2	2	90.452	89.951	2;3	2.3033E-40	79105	160511_QHF_FH_JSI9i_2	203.82	172.39			1.0194	1.0793	9.7236	9	1	Median	1.1718	0.99297	11.794	2	0	Median	0.82502	1.0108	8.5291	3	1	Median	0.98915	1.011	10.463	2	0	Median	1.0497	1.1607	6.1971	2	0	Median	217560000	102720000	114840000	71959000	30489000	41471000	49231000	23923000	25308000	62367000	31163000	31204000	34007000	17145000	16862000	19926	690	18884	122604;122605;122606;122607;122608;122609;122610;122611;122612;122613;122614	166198;166199;166200;166201;166202;166203;166204;166205;166206;166207;166208;166209;166210	166203			13	
GLTVVVAFR	0	Unmodified	960.57565	0.57565135	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	73.857	65.145	2	1.4131E-32	35266	160513_QHF_FH_JSI11Kac_6	191.63	165.73			1.1506	1.1032	16.107	4	0	Median	1.3089	1.1374	NaN	1	0	Median	0.80228	0.92351	NaN	1	0	Median	1.4825	1.3627	NaN	1	0	Median	1.0114	1.0701	NaN	1	0	Median	208800000	105040000	103760000	37595000	16908000	20687000	58404000	33238000	25166000	59291000	26656000	32635000	53506000	28235000	25271000	19927	1051	18885	122615;122616;122617;122618;122619;122620	166211;166212;166213;166214;166215;166216;166217	166211			7	
GLTYLWSLK	1	Unmodified	1079.6015	0.60153174	2365	Q13163	MAP2K5	Dual specificity mitogen-activated protein kinase kinase 5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				81.641	80.3	2	0.013094	66072	160511_QHF_FH_JSI9i_3	56.729	39.489			0.045155	0.036152	NaN	1	1	Median	0.045155	0.036152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	238440000	232590000	5849800	238440000	232590000	5849800	0	0	0	0	0	0	0	0	0	19928	2365	18886	122621	166218	166218			1	
GLVAEGHR	0	Unmodified	837.4457	0.4456998	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	4	3	2	7.4432	4.9203	2	0.00011034	4455	160511_QHF_FH_JSI11i_3	128.57	75.012			0.94854	1.0105	10.352	10	3	Median	1.4059	1.1765	14.813	2	1	Median	0.87477	1.0249	9.7697	3	1	Median	1.032	1.0089	3.3448	3	1	Median	0.93008	0.96541	2.428	2	0	Median	2208300000	1069500000	1138800000	230850000	95868000	134980000	451630000	242420000	209210000	686420000	306710000	379720000	839410000	424480000	414930000	19929	1139	18887	122622;122623;122624;122625;122626;122627;122628;122629;122630;122631;122632;122633	166219;166220;166221;166222;166223;166224;166225;166226;166227;166228;166229;166230;166231;166232;166233;166234;166235	166219			17	
GLVAGGIIGALLGTPVGGLLMAFQK	1	Unmodified	2352.3603	0.36030919	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		104	98.283	3	4.3959E-30	54328	160513_QHF_FH_JSI11Kac_6	155.49	147.2			0.79665	0.95333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79665	0.95333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139840000	76424000	63414000	0	0	0	139840000	76424000	63414000	0	0	0	0	0	0	19930	4907	18888	122634;122635	166236;166237	166236			2	
GLVAIPVSIFYSVPHQK	1	Unmodified	1854.0404	0.040355257	2762	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	92.999	87.408	3	8.2087E-12	46544	160513_QHF_FH_JSI10Kac_6	129.29	110.7			0.90751	0.92963	12.24	6	0	Median	1.272	1.0551	11.04	2	0	Median	0.79392	0.9115	5.5151	2	0	Median	0.97176	0.91186	NaN	1	0	Median	0.74444	0.78965	NaN	1	0	Median	1152300000	593140000	559150000	289650000	124810000	164830000	361550000	214470000	147080000	369950000	177650000	192310000	131140000	76206000	54932000	19931	2762	18889	122636;122637;122638;122639;122640;122641	166238;166239;166240;166241;166242;166243;166244;166245;166246;166247	166246			10	
GLVASLISVK	1	Unmodified	985.61718	0.61718181	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.98			3					2	4	3	3	1	2	72.883	66.331	2	5.8742E-12	34114	160513_QHF_FH_JSI9Kac_5	151.44	97.473			1.0674	0.9916	11.318	9	0	Median	1.1254	0.97073	3.892	3	0	Median	0.96672	1.1695	16.132	3	0	Median	1.0282	0.98245	NaN	1	0	Median	1.0802	1.1277	1.4069	2	0	Median	2156400000	1057800000	1098600000	492060000	220420000	271640000	716830000	362290000	354540000	245210000	114840000	130370000	702290000	360200000	342090000	19932	679	18890	122642;122643;122644;122645;122646;122647;122648;122649;122650	166248;166249;166250;166251;166252;166253;166254;166255;166256;166257	166250			10	
GLVAVITGGASGLGLATAER	0	Unmodified	1812.0105	0.010511692	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.4		3	6						5	5	5	3	1	88.461	85.35	2;3	2.7046E-158	43720	160513_QHF_FH_JSI10Kac_6	223.45	212.6			1.0391	0.96569	25.949	14	3	Median	1.1956	0.98211	9.7083	5	0	Median	0.78091	0.93414	16.236	5	1	Median	1.1654	1.1328	11.293	3	1	Median	0.38798	0.4222	NaN	1	1	Median	1467700000	776500000	691250000	341420000	149570000	191860000	984310000	552040000	432270000	132040000	68148000	63893000	9970500	6737400	3233100	19933	4304	18891	122651;122652;122653;122654;122655;122656;122657;122658;122659;122660;122661;122662;122663;122664	166258;166259;166260;166261;166262;166263;166264;166265;166266;166267;166268;166269;166270;166271;166272;166273;166274;166275;166276;166277	166277			19	
GLVEDTLR	0	Unmodified	901.4869	0.48689592	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.171	33.834	2	0.0087946	28673	160511_QHF_FH_JSI12i_2	66.073	39.111			1.4905	1.6439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4905	1.6439	NaN	1	1	Median	76232000	24942000	51290000	0	0	0	0	0	0	0	0	0	76232000	24942000	51290000	19934	2636	18892	122665	166278	166278			1	
GLVEPVDVVDNADGTQTVNYVPSR	0	Unmodified	2543.2504	0.25036063	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	78.549	78.079	2;3;4	0	70806	160511_QHF_FH_JSI10i_1	413.31	407.01			1.1081	1.1247	4.5812	11	0	Median	1.3268	1.063	5.794	3	0	Plateau	0.9123	1.0781	6.2077	3	0	Plateau	1.1609	1.1416	5.1151	3	0	Median	1.0825	1.1432	2.3065	2	0	Median	5861500000	2811000000	3050500000	1269700000	553970000	715690000	1200100000	593540000	606600000	1893400000	901100000	992290000	1498300000	762370000	735930000	19935	1192	18893	122666;122667;122668;122669;122670;122671;122672;122673;122674;122675;122676	166279;166280;166281;166282;166283;166284;166285;166286;166287;166288;166289;166290;166291;166292;166293;166294;166295;166296;166297;166298;166299;166300	166293			22	
GLVFDTLYGNLLK	1	Unmodified	1451.8024	0.8024164	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.39	101.31	2	6.2097E-117	88058	160511_QHF_FH_JSI12i_3	278.11	223.13			1.1303	1.3009	20.612	4	0	Linear	1.0965	0.8937	NaN	1	0	Median	0.83523	0.97649	NaN	1	0	Median	1.1651	1.0902	NaN	1	0	Median	1.4243	1.4365	NaN	1	0	Median	1813700000	789950000	1023700000	113090000	54315000	58779000	225280000	128160000	97115000	694430000	310240000	384190000	780850000	297230000	483620000	19936	1690	18894	122677;122678;122679;122680	166301;166302;166303;166304;166305;166306	166306			6	
GLVFLNGK	1	Unmodified	846.49634	0.49633839	91	L0R8F8	SMCR7L		yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	53.897	53.057	2	0.00027031	45362	160511_QHF_FH_JSI12i_3	132.94	97.836			0.80903	0.83548	23.82	4	4	Median	1.1664	0.95948	NaN	1	1	Median	0.78479	0.90523	NaN	1	1	Median	0.83403	0.77111	NaN	1	1	Median	0.54205	0.564	NaN	1	1	Median	909510000	660380000	249140000	118440000	65040000	53397000	114570000	67715000	46857000	155650000	102830000	52822000	520850000	424790000	96060000	19937	91	18895	122681;122682;122683;122684	166307;166308;166309;166310	166310			4	
GLVGEIIK	1	Unmodified	827.51165	0.5116541	1209;1079	P22392;P15531	NME2;NME1	Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.39	4	8	7				3	6	4	5	8	10	9	55.144	50.678	1;2	0.00035515	44380	160511_QHF_FH_JSI9i_2	111.01	37.969			1.005	1.0373	13.47	31	2	Median	1.1213	0.94835	8.7535	5	0	Median	0.90889	1.0791	6.9978	8	0	Median	1.0708	1.0273	19.611	10	1	Median	1.0106	1.071	10.133	8	1	Median	30235000000	14298000000	15937000000	4931300000	2144400000	2786900000	6541400000	3641400000	2900000000	9515400000	4720900000	4794500000	9246900000	3791000000	5455900000	19938	1209;1079	18896	122685;122686;122687;122688;122689;122690;122691;122692;122693;122694;122695;122696;122697;122698;122699;122700;122701;122702;122703;122704;122705;122706;122707;122708;122709;122710;122711;122712;122713;122714;122715;122716	166311;166312;166313;166314;166315;166316;166317;166318;166319;166320;166321;166322;166323;166324;166325;166326;166327;166328;166329;166330;166331;166332;166333;166334;166335;166336;166337;166338;166339;166340;166341;166342;166343;166344;166345;166346;166347;166348;166349;166350;166351;166352;166353;166354;166355;166356;166357;166358;166359;166360;166361;166362;166363	166339			49	
GLVGIGLFALAHAAFSAAQHR	0	Unmodified	2106.1487	0.14867693	3533	Q8N4V1	MMGT1	Membrane magnesium transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	95.816	87.221	3;4	6.4017E-60	49235	160513_QHF_FH_JSI11Kac_6	195.78	181.09			1.171	1.2328	33.445	5	1	Median	0.97105	0.83465	NaN	1	0	Median	0.52927	0.63501	NaN	1	0	Median	1.4076	1.3381	0.6449	2	1	Median	1.171	1.2328	NaN	1	0	Median	1714600000	930800000	783810000	572140000	284270000	287870000	474190000	347750000	126440000	425610000	178920000	246700000	242670000	119870000	122800000	19939	3533	18897	122717;122718;122719;122720;122721	166364;166365;166366;166367;166368	166364			5	
GLVGNPLPSVR	0	Unmodified	1107.64	0.64004252	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.849	54.728	2	0.01747	46953	160511_QHF_FH_JSI12i_3	74.464	50.31			1.3994	1.356	1.9057	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4759	1.3744	NaN	1	0	Median	1.3269	1.3379	NaN	1	0	Median	89812000	42707000	47105000	0	0	0	0	0	0	43587000	21352000	22235000	46225000	21355000	24871000	19940	4733	18898	122722;122723	166369;166370	166370			0	
GLVGPELHDR	0	Unmodified	1091.5724	0.57235688	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1		1	2	2	27.589	25.512	2;3	3.5598E-05	21767	160511_QHF_FH_JSI11i_3	80.706	50.019			1.3141	1.2399	20.529	5	3	Median	NaN	NaN	NaN	0	0	Median	0.79178	0.96491	NaN	1	1	Median	1.4954	1.4543	22.554	2	1	Median	1.2731	1.2904	7.1627	2	1	Median	706830000	364540000	342290000	0	0	0	85264000	50147000	35118000	277690000	164540000	113150000	343870000	149850000	194020000	19941	2636	18899	122724;122725;122726;122727;122728	166371;166372;166373;166374;166375	166371			5	
GLVHAAGPGQDSGSQAGSPPTR	0	Unmodified	2045.9879	0.98787877	4055	Q96ER9	CCDC51	Coiled-coil domain-containing protein 51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	23.015	22.139	3	5.8645E-58	18122	160511_QHF_FH_JSI10i_3	214.26	207.2			1.1056	1.0153	8.7041	5	0	Median	1.3948	1.1396	4.4818	2	0	Median	0.82281	0.96953	3.5	2	0	Median	1.1056	1.0153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	448440000	216810000	231630000	191060000	81912000	109140000	208390000	114220000	94165000	48994000	20670000	28325000	0	0	0	19942	4055	18900	122729;122730;122731;122732;122733;122734	166376;166377;166378;166379;166380;166381;166382;166383;166384	166378			9	
GLVLDHGAR	0	Unmodified	936.51411	0.51411372	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		6	8						6	6	4	6	4	18.951	16.171	2;3	1.1658E-31	13404	160511_QHF_FH_JSI11i_3	206.5	137.06			0.98046	0.94696	20.458	20	2	Median	1.3829	1.1522	27.491	6	1	Median	0.8029	0.9393	7.635	4	0	Median	0.95945	0.90352	7.8686	6	1	Median	0.98421	1.0273	18.412	4	0	Median	11769000000	5812200000	5957100000	1912700000	781190000	1131600000	2160500000	1091900000	1068600000	3613500000	1793100000	1820400000	4082500000	2146000000	1936600000	19943	1494	18901	122735;122736;122737;122738;122739;122740;122741;122742;122743;122744;122745;122746;122747;122748;122749;122750;122751;122752;122753;122754	166385;166386;166387;166388;166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400;166401;166402;166403;166404;166405;166406;166407;166408;166409;166410;166411;166412;166413;166414;166415;166416	166388			32	
GLVLGIYSK	1	Unmodified	948.56442	0.56441796	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.88		1	3					5	4	4	3	2	4	66.572	59.344	2	5.0724E-06	50723	160511_QHF_FH_JSI12i_3	117.04	82.228			0.94344	0.85793	34.23	13	2	Median	0.68561	0.58662	47.005	4	1	Median	0.71994	0.85793	29.091	3	0	Median	0.86821	0.84697	11.782	2	0	Median	0.96144	1.0403	15.338	4	1	Median	895410000	467590000	427820000	146300000	74552000	71746000	205070000	115710000	89362000	267500000	127120000	140390000	276540000	150210000	126330000	19944	1313	18902	122755;122756;122757;122758;122759;122760;122761;122762;122763;122764;122765;122766;122767	166417;166418;166419;166420;166421;166422;166423;166424;166425;166426;166427;166428;166429;166430;166431;166432;166433;166434;166435	166431			16	
GLVLGPIHK	1	Unmodified	932.58074	0.58073672	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.3		8	10					1	8	8	7	6	6	45.28	41.48	2;3	1.7762E-05	36217	160511_QHF_FH_JSI9i_2	95.909	77.134			0.96585	0.99347	43.854	27	2	Median	1.212	1.0246	64.041	8	1	Median	0.90124	0.95571	49.06	7	1	Median	1.0252	0.988	5.468	6	0	Median	0.84097	0.88907	11.504	6	0	Median	42723000000	18963000000	23759000000	10618000000	3434500000	7183500000	9229700000	4302700000	4927000000	9707300000	4585500000	5121800000	13168000000	6640600000	6527100000	19945	895	18903	122768;122769;122770;122771;122772;122773;122774;122775;122776;122777;122778;122779;122780;122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791;122792;122793;122794	166436;166437;166438;166439;166440;166441;166442;166443;166444;166445;166446;166447;166448;166449;166450;166451;166452;166453;166454;166455;166456;166457;166458;166459;166460;166461;166462;166463;166464;166465;166466;166467;166468;166469;166470;166471;166472;166473;166474;166475;166476;166477;166478;166479;166480;166481;166482;166483;166484;166485;166486;166487;166488;166489;166490;166491;166492;166493;166494;166495;166496;166497;166498;166499;166500;166501;166502;166503;166504	166475			68	
GLVLGPIHKNQK	2	Acetyl (K)	1344.7878	0.78776939	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.314								1	8	1	3	3	2	54.222	44.865	2;3	9.0563E-12	24324	160513_QHF_FH_JSI11Kac_6	120.07	91.675			0.25027	0.23495	89.267	5	1	Median	0.45671	0.37876	NaN	1	1	Median	1.4068	1.6469	NaN	1	0	Median	0.21849	0.20639	18.334	2	0	Median	0.214	0.22518	NaN	1	0	Median	538520000	406780000	131740000	6098800	5413400	685440	74885000	25884000	49001000	415100000	341590000	73502000	42438000	33888000	8549900	19946	895	18904	122795;122796;122797;122798;122799;122800;122801;122802;122803	166505;166506;166507;166508;166509;166510;166511;166512;166513;166514;166515	166507	636		11	
GLVLIAFSQYLQQCPFDEHVK	1	Unmodified	2491.257	0.25696633	50	CON__P02769			yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	94.593	86.3	3;4	6.8039E-48	46483	160513_QHF_FH_JSI12Kac_6	184.32	176.69		+	0.83407	0.89083	28.422	7	0	Median	1.6595	1.4528	NaN	1	0	Median	0.89331	1.0764	9.9841	2	0	Median	0.70946	0.66522	2.9553	2	0	Median	0.823	0.87524	2.4973	2	0	Median	1329600000	700400000	629240000	65294000	23666000	41628000	415490000	217460000	198030000	574460000	308930000	265530000	274400000	150350000	124050000	19947	50	18905	122804;122805;122806;122807;122808;122809;122810	166516;166517;166518;166519;166520;166521;166522	166518			6	
GLVLLPK	1	Unmodified	738.50036	0.50036114	1894	P57737	CORO7	Coronin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.825	53.883	2	0.010513	46314	160511_QHF_FH_JSI12i_2	80.377	43.79			1.1177	1.1932	26.951	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97207	0.98617	NaN	1	1	Median	1.2852	1.4437	NaN	1	1	Median	35013000	15150000	19863000	0	0	0	0	0	0	23540000	10618000	12923000	11473000	4532600	6940200	19948	1894	18906	122811;122812	166523;166524	166523			2	
GLVLMSR	0	Unmodified	774.44219	0.44219433	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.33		4	4				2	4	3	4	5	4	4	44.173	38.478	2	2.3736E-29	33785	160511_QHF_FH_JSI11i_3	199.4	97.674			0.89976	0.95132	12.295	17	1	Median	1.1957	1.0071	18.217	4	1	Median	0.78351	0.93599	7.5235	5	0	Median	0.99019	0.94839	7.2846	4	0	Median	0.95113	1.0113	16.757	4	0	Median	11605000000	5819900000	5785000000	3206600000	1453700000	1752900000	3344500000	1830600000	1513800000	2493600000	1218000000	1275500000	2560300000	1317500000	1242800000	19949	1299	18907	122813;122814;122815;122816;122817;122818;122819;122820;122821;122822;122823;122824;122825;122826;122827;122828;122829	166525;166526;166527;166528;166529;166530;166531;166532;166533;166534;166535;166536;166537;166538;166539;166540;166541;166542;166543;166544;166545;166546;166547;166548;166549;166550;166551;166552;166553	166526			29	
GLVLMSR	0	Oxidation (M)	790.43711	0.43710895	1299	P27824	CANX	Calnexin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.95		1	7			1	3	4	4	7	7	2	4	28.054	22.326	2	0.0036221	12962	160513_QHF_FH_JSI10Kac_6	94.006	45.246			1.0478	0.96363	17.812	17	1	Median	1.2277	1.0538	23.514	7	0	Median	0.8282	0.96079	12.469	5	1	Median	1.1483	1.0983	24.958	2	0	Median	0.89944	0.90771	12.972	3	0	Plateau	1474300000	722380000	751880000	586430000	268850000	317590000	419810000	225210000	194600000	123090000	52897000	70195000	344920000	175430000	169500000	19950	1299	18907	122830;122831;122832;122833;122834;122835;122836;122837;122838;122839;122840;122841;122842;122843;122844;122845;122846;122847;122848;122849	166554;166555;166556;166557;166558;166559;166560;166561;166562;166563;166564;166565;166566;166567;166568;166569;166570;166571;166572;166573	166573		944	20	
GLVLPVGGGSAPGPLQSK	1	Unmodified	1632.9199	0.91990577	3207	Q71SY5	MED25	Mediator of RNA polymerase II transcription subunit 25	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.537	73.242	2	0.0009376	63522	160511_QHF_FH_JSI12i_3	67.456	60.194			0.79051	0.86002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79051	0.86002	NaN	1	1	Median	9310200	5706200	3604000	0	0	0	0	0	0	0	0	0	9310200	5706200	3604000	19951	3207	18908	122850	166574	166574			1	
GLVLPVGGIK	1	Unmodified	951.6117	0.6117025	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.747	67.852	2	0.020409	59875	160511_QHF_FH_JSI9i_2	63.48	49.322			0.99627	1.0557	7.5638	4	0	Median	1.3459	1.1717	NaN	1	0	Median	0.8048	0.98621	NaN	1	0	Median	0.96485	1.023	NaN	1	0	Median	1.0287	1.0895	NaN	1	0	Median	108610000	53506000	55108000	24347000	7360300	16987000	22665000	12601000	10064000	38167000	21813000	16354000	23435000	11732000	11702000	19952	3355	18909	122851;122852;122853;122854	166575;166576;166577	166576			0	
GLVLVPSR	0	Unmodified	839.52289	0.52288749	5005	Q9NUL7	DDX28	Probable ATP-dependent RNA helicase DDX28	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	45.837	45.04	2	0.0057881	38607	160511_QHF_FH_JSI12i_2	64.567	24.464			0.98631	0.9747	11.91	4	1	Median	1.1712	0.9968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0488	1.0384	NaN	1	0	Median	0.82743	0.86925	13.023	2	1	Median	490980000	244880000	246110000	84202000	36598000	47604000	0	0	0	82751000	43043000	39709000	324030000	165240000	158790000	19953	5005	18910	122855;122856;122857;122858	166578;166579;166580	166578			3	
GLVMVKPGSIK	2	Unmodified	1127.6737	0.67365083	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	42.167	41.335	2;3	4.8066E-17	34799	160511_QHF_FH_JSI10i_3	147.4	121.3			1.122	1.0578	8.3394	8	0	Median	1.2306	0.98975	3.7608	2	0	Median	0.90812	1.0342	1.7168	2	0	Median	1.2499	1.1898	9.9765	2	0	Median	1.0701	1.0727	0.5211	2	0	Median	3963500000	1776700000	2186700000	1072900000	517240000	555700000	834470000	393070000	441400000	834650000	349990000	484660000	1221400000	516440000	704990000	19954	1658	18911	122859;122860;122861;122862;122863;122864;122865;122866	166581;166582;166583;166584;166585;166586;166587;166588;166589;166590;166591;166592;166593;166594;166595;166596;166597	166588			17	
GLVMVKPGSIK	2	Acetyl (K)	1169.6842	0.68421552	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		71.78	60.918	2	0.004124	32540	160513_QHF_FH_JSI11Kac_5	68.735	56.887			0.347	0.34624	35.007	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.347	0.34624	35.007	2	0	Median	NaN	NaN	NaN	0	0	Median	6920400	4861300	2059100	0	0	0	0	0	0	6920400	4861300	2059100	0	0	0	19955	1658	18911	122867;122868	166598	166598	1678		1	
GLVMVKPGSIK	2	Acetyl (K);Oxidation (M)	1185.6791	0.67913014	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15	0								2				1	1	60.531	49.725	2	6.3091E-05	27178	160513_QHF_FH_JSI11Kac_5	99.653	81.341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2837200	2837200	0	0	0	0	0	0	0	1750700	1750700	0	1086500	1086500	0	19956	1658	18911	122869;122870	166599;166600	166599	1678	1341	2	
GLVMVKPGSIKPHQK	3	Unmodified	1617.9389	0.93886707	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	1	3		31.726	31.016	3;4;5	0.0009123	26897	160511_QHF_FH_JSI10i_3	73.887	69.085			0.74708	0.78995	24.345	6	6	Median	0.9306	0.75348	40.668	2	2	Median	0.67722	0.8237	NaN	1	1	Median	0.98099	0.90707	24.42	3	3	Plateau	NaN	NaN	NaN	0	0	Median	361450000	197990000	163460000	195210000	99336000	95870000	80960000	48575000	32385000	85283000	50082000	35201000	0	0	0	19957	1658	18912	122871;122872;122873;122874;122875;122876	166601;166602;166603;166604;166605;166606	166604			6	
GLVMVKPGSIKPHQK	3	Acetyl (K)	1659.9494	0.94943176	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									4		2	2		52.714	43.548	3;4	0.00026463	23785	160513_QHF_FH_JSI10Kac_6	89.466	89.466			0.080973	0.09318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.080973	0.09318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33615000	32837000	778370	0	0	0	19957000	19179000	778370	13658000	13658000	0	0	0	0	19958	1658	18912	122877;122878;122879;122880	166607;166608;166609;166610	166609	1678		4	
GLVNDLAR	0	Unmodified	856.47667	0.47666558	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		31.376	31.064	2	0.0019525	26347	160511_QHF_FH_JSI11i_2	83.753	37.327			0.8303	0.80867	8.751	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8303	0.80867	8.751	2	0	Median	NaN	NaN	NaN	0	0	Median	189720000	100030000	89686000	0	0	0	0	0	0	189720000	100030000	89686000	0	0	0	19959	3290	18913	122881;122882	166611	166611			1	
GLVNLQSGAPKPEENPSLNIQFK	2	Unmodified	2479.3071	0.30708764	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	75.701	75.359	3	2.6306E-19	67286	160511_QHF_FH_JSI11i_3	141.78	137.48			0.96699	0.91424	81.985	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.173	0.21049	NaN	1	0	Median	0.96699	0.91424	NaN	1	0	Median	0.80417	0.82485	NaN	1	0	Median	435380000	240300000	195080000	0	0	0	36102000	30527000	5575100	256510000	127250000	129250000	142770000	82519000	60247000	19960	5535	18914	122883;122884;122885;122886	166612;166613;166614;166615;166616	166613			5	
GLVNLYNLPGDNK	1	Unmodified	1415.7409	0.74087877	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	69.557	68.609	2	0.00028612	60073	160511_QHF_FH_JSI11i_2	74.841	54.538			0.49419	0.51609	28.576	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6254	0.63165	NaN	1	0	Median	0.39051	0.42167	NaN	1	0	Median	54125000	32886000	21239000	0	0	0	0	0	0	28379000	15104000	13274000	25747000	17782000	7964600	19961	2694	18915	122887;122888;122889	166617;166618	166617			2	
GLVPAGIR	0	Unmodified	781.48102	0.48102268	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6	7.07	2								1		2		1	38.176	37.805	2	0.0020411	33945	160511_QHF_FH_JSI10i_1	92.692	12.315			0.75711	0.8915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75711	0.8915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16414000	8160400	8253100	0	0	0	16414000	8160400	8253100	0	0	0	0	0	0	19962	5262	18916	122890;122891;122892	166619;166620;166621	166619			3	
GLVPEDDTK	1	Unmodified	972.47639	0.47639081	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	26.319	22.411	2	2.7523E-05	19939	160511_QHF_FH_JSI12i_1	103.56	84.781			0.95653	0.95453	4.8886	7	0	Median	1.056	0.88424	NaN	1	0	Median	0.82285	0.97634	3.7724	2	0	Median	0.97339	0.94923	0.78823	2	0	Median	0.94359	1.0084	2.3244	2	0	Median	1141600000	550980000	590570000	347430000	144530000	202900000	229510000	120740000	108770000	234070000	120520000	113550000	330550000	165190000	165360000	19963	2676	18917	122893;122894;122895;122896;122897;122898;122899	166622;166623;166624;166625;166626;166627;166628;166629;166630;166631;166632	166625			11	
GLVPEDK	1	Unmodified	756.40177	0.4017693	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	1	4	21.741	18.401	2	0.0082581	15702	160511_QHF_FH_JSI10i_1	84.244	50.505			1.0553	0.94076	13.091	5	1	Plateau	1.1887	0.94955	NaN	1	0	Median	0.83818	0.99262	NaN	1	0	Median	1.0553	1.001	NaN	1	0	Median	0.98245	1.052	24.707	2	1	Median	2789100000	1407400000	1381700000	952640000	441540000	511100000	870330000	449670000	420650000	1989900	991320	998620	964170000	515230000	448930000	19964	175	18918	122900;122901;122902;122903;122904;122905;122906	166633;166634;166635;166636;166637;166638;166639;166640	166637			8	
GLVPPMHLADILMK	1	Unmodified	1533.8411	0.84112686	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	1	3	99.358	99.29	2;3	2.9566E-05	85742	160511_QHF_FH_JSI12i_3	98.942	87.683			1.1382	1.1498	10.308	5	1	Median	1.2972	1.0886	NaN	1	0	Median	1.0137	1.1935	NaN	1	0	Median	1.0564	0.9742	NaN	1	0	Median	1.1623	1.2139	7.672	2	1	Median	125690000	57850000	67836000	15405000	5782800	9622300	17289000	8479700	8809400	31752000	17006000	14745000	61240000	26581000	34659000	19965	2564	18919	122907;122908;122909;122910;122911;122912	166641;166642;166643;166644;166645;166646;166647;166648;166649;166650;166651;166652;166653	166651			13	
GLVPTDYVEILPSDGK	1	Unmodified	1701.8825	0.88251721	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	87.945	87.447	2;3	5.513E-05	79662	160511_QHF_FH_JSI11i_1	105.17	95.217			1.8489	1.9608	95.199	5	4	Median	1.1193	0.90453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.3902	5.1503	105.09	2	2	Median	1.5194	1.5968	29.038	2	1	Median	91386000	30886000	60501000	18819000	9449900	9368700	0	0	0	35022000	7691300	27330000	37546000	13744000	23802000	19966	5685	18920	122913;122914;122915;122916;122917;122918	166654;166655;166656;166657;166658;166659;166660	166654			7	
GLVQALGLSNFNSR	0	Unmodified	1474.7892	0.78922595	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.33	6.67		1	2						3	3	3			77.647	72.411	2;3	2.4825E-37	39337	160513_QHF_FH_JSI10Kac_6	224.42	136.51			1.0748	1.2437	87.155	5	3	Median	4.836	4.0698	119.59	3	3	Plateau	0.88808	1.0216	27.823	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	206510000	88017000	118490000	119100000	36882000	82220000	87409000	51135000	36274000	0	0	0	0	0	0	19967	1054	18921	122919;122920;122921;122922;122923;122924	166661;166662;166663;166664;166665;166666	166666			6	
GLVQALQTK	1	Unmodified	956.56548	0.56548059	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.46	4	4	5				3	4	3	5	5	7	6	40.646	35.682	2	1.827E-23	30418	160511_QHF_FH_JSI12i_3	194.2	95.898			0.90737	0.97196	18.526	22	0	Median	1.3835	1.176	17.377	5	0	Median	0.88684	1.0539	9.4811	5	0	Median	0.89065	0.87962	12.042	6	0	Median	0.83486	0.89852	15.053	6	0	Median	16159000000	7407300000	8751200000	2772800000	1001000000	1771700000	3569700000	1652300000	1917400000	4845900000	2272800000	2573100000	4970100000	2481200000	2489000000	19968	1650	18922	122925;122926;122927;122928;122929;122930;122931;122932;122933;122934;122935;122936;122937;122938;122939;122940;122941;122942;122943;122944;122945;122946;122947	166667;166668;166669;166670;166671;166672;166673;166674;166675;166676;166677;166678;166679;166680;166681;166682;166683;166684;166685;166686;166687;166688;166689;166690;166691;166692;166693;166694;166695;166696;166697;166698;166699;166700;166701;166702;166703;166704;166705;166706;166707;166708;166709;166710	166708			44	
GLVRLGEKERHLEHECPER	1	Unmodified	2343.1866	0.18659535	2329	Q12933	TRAF2	TNF receptor-associated factor 2	yes	yes	0	0	0	3			By MS/MS		16	0									1			1		97.454	88.048	3	0.051891	50258	160513_QHF_FH_JSI11Kac_6	49.993	26.664			0.91082	0.85766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91082	0.85766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	342400000	158120000	184280000	0	0	0	0	0	0	342400000	158120000	184280000	0	0	0	19969	2329	18923	122948	166711	166711			1	
GLVSSDELAK	1	Unmodified	1017.5342	0.53424004	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.951	33.709	2	0.0023646	30265	160511_QHF_FH_JSI11i_1	63.534	40.515			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19970	2470	18924	122949	166712	166712			1	
GLVTTAIIQR	0	Unmodified	1070.6448	0.64479354	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			15	0								2		1	1			61.983	51.31	2	0.001585	27086	160513_QHF_FH_JSI9Kac_5	79.906	56.478			0.53072	0.52888	22.321	2	0	Median	0.55089	0.45166	NaN	1	0	Median	0.5113	0.6193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4743400	2733400	2010000	2320800	1118400	1202300	2422600	1614900	807670	0	0	0	0	0	0	19971	1584	18925	122950;122951	166713;166714;166715	166713			3	
GLVVAQMMWLMDHIFK	1	Unmodified	1917.9667	0.96673808	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.698	91.592	3	6.8401E-55	54993	160513_QHF_FH_JSI10Kac_6	202.89	192.24			0.79626	0.95205	21.122	3	1	Median	1.3351	1.1621	NaN	1	0	Median	0.79626	0.95205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7211	0.76185	NaN	1	1	Median	926710000	447280000	479430000	258950000	78559000	180390000	588260000	325550000	262710000	0	0	0	79502000	43173000	36329000	19972	3855	18926	122952;122953;122954	166716;166717;166718;166719;166720	166720			5	
GLVVDMDGFEEERK	1	Unmodified	1622.761	0.76102187	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							4	2	4	5	60.846	60.17	2;3	1.9027E-52	51722	160511_QHF_FH_JSI12i_3	252.21	222.44			0.98984	0.94364	8.0422	13	2	Median	1.1604	0.97097	8.0858	3	2	Median	0.78414	0.97085	9.2715	2	0	Median	0.98702	0.93653	8.9913	4	0	Median	0.89829	0.95375	9.985	4	0	Median	2653600000	1274800000	1378800000	283420000	134350000	149070000	358510000	203500000	155010000	779220000	399840000	379370000	1232500000	537140000	695330000	19973	1664	18927	122955;122956;122957;122958;122959;122960;122961;122962;122963;122964;122965;122966;122967;122968;122969	166721;166722;166723;166724;166725;166726;166727;166728;166729;166730;166731;166732;166733;166734;166735;166736;166737;166738;166739;166740;166741;166742;166743;166744;166745;166746;166747;166748;166749;166750;166751;166752;166753	166752			33	
GLVVPSGGGR	0	Unmodified	897.50321	0.50321468	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	2	2	25.671	24.975	2	5.8786E-05	20647	160511_QHF_FH_JSI12i_3	91.318	69.187			1.069	1.1174	15.051	7	2	Median	1.3643	1.1727	NaN	1	0	Median	0.94173	1.1258	12.877	2	0	Median	0.9637	0.93133	6.8287	2	1	Median	1.1574	1.2452	15.311	2	1	Median	641400000	321910000	319490000	86345000	38241000	48104000	139640000	73374000	66263000	202080000	106080000	96000000	213340000	104220000	109120000	19974	5382	18928	122970;122971;122972;122973;122974;122975;122976;122977;122978	166754;166755;166756;166757;166758;166759;166760;166761;166762;166763;166764;166765	166764			12	
GLVVPVIR	0	Unmodified	851.55927	0.559273	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	60.333	59.553	2	3.5301E-05	51267	160511_QHF_FH_JSI12i_2	137.5	75.508			0.96551	0.97189	14.18	10	0	Median	1.2944	1.0778	13.183	2	0	Median	0.75938	0.91031	15.466	3	0	Median	0.98731	0.96203	11.89	3	0	Median	1.0297	1.0937	18.737	2	0	Median	1450400000	728720000	721730000	193210000	91238000	101970000	309500000	173270000	136230000	498150000	243130000	255030000	449590000	221080000	228500000	19975	1465	18929	122979;122980;122981;122982;122983;122984;122985;122986;122987;122988	166766;166767;166768;166769;166770;166771;166772;166773;166774;166775;166776;166777;166778;166779;166780;166781	166768			16	
GLVVSPK	1	Unmodified	698.43268	0.4326755	2121	P83876	TXNL4A	Thioredoxin-like protein 4A	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	22.801	21.996	2	0.04276	18268	160511_QHF_FH_JSI11i_2	46.016	5.9126			1.0993	1.0921	36.318	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6554	2.036	NaN	1	0	Median	1.0993	1.0921	NaN	1	0	Median	0.94746	1.0788	NaN	1	0	Median	115660000	59841000	55815000	0	0	0	34142000	16035000	18107000	46456000	28313000	18143000	35058000	15493000	19565000	19976	2121	18930	122989;122990;122991	166782	166782			1	
GLVYETSVLDPDEGIR	0	Unmodified	1761.8785	0.87849447	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	2.99	10	8	1					1		5	4	6	5	74.523	73.832	2;3	1.1425E-52	64740	160511_QHF_FH_JSI11i_2	224.24	174.74			0.95057	1.0014	23.58	17	2	Median	1.2475	1.2651	18.866	5	1	Linear	0.88833	1.0862	23.878	4	1	Median	0.97273	0.96537	8.3051	4	0	Median	0.84913	0.90904	30.633	4	0	Median	1794300000	931820000	862500000	330470000	137440000	193030000	493920000	278780000	215140000	482780000	244900000	237880000	487160000	270700000	216450000	19977	517	18931	122992;122993;122994;122995;122996;122997;122998;122999;123000;123001;123002;123003;123004;123005;123006;123007;123008;123009;123010;123011	166783;166784;166785;166786;166787;166788;166789;166790;166791;166792;166793;166794;166795;166796;166797;166798;166799;166800;166801;166802;166803;166804;166805;166806;166807;166808;166809;166810;166811;166812;166813;166814;166815;166816;166817;166818;166819;166820;166821	166812			39	
GLVYETSVLDPDEGIRFR	0	Unmodified	2065.048	0.04801941	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	80.892	80.172	3	6.1095E-08	71602	160511_QHF_FH_JSI11i_3	125.52	115.99			1.3372	1.2767	13.536	4	3	Linear	NaN	NaN	NaN	0	0	Median	1.2127	1.4144	0.095602	2	2	Median	1.2163	1.1531	NaN	1	0	Median	1.0694	1.0923	NaN	1	1	Median	303440000	145280000	158170000	0	0	0	127060000	59887000	67173000	125680000	56225000	69458000	50701000	29166000	21535000	19978	517	18932	123012;123013;123014;123015	166822;166823;166824;166825	166822			4	
GLVYSSNFQNVK	1	Unmodified	1354.6881	0.68811492	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		4	2					1		1	1	3	2	49.865	47.716	2	3.2328E-31	42098	160511_QHF_FH_JSI11i_3	186.25	144.14			1.0156	1.023	17.733	7	0	Median	1.0568	0.927	NaN	1	0	Median	0.93554	1.1308	NaN	1	0	Median	1.0138	0.98555	28.301	3	0	Median	1.0241	1.0636	5.4998	2	0	Median	248780000	130400000	118380000	33326000	14947000	18379000	18479000	9290100	9189300	94635000	54675000	39960000	102340000	51483000	50855000	19979	4188	18933	123016;123017;123018;123019;123020;123021;123022	166826;166827;166828;166829;166830;166831;166832;166833;166834;166835;166836	166827			11	
GLWHEEMK	1	Unmodified	1028.475	0.47495102	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.442		11	4							3	2	5	5	27.147	26.481	2;3	0.00015898	21941	160511_QHF_FH_JSI11i_2	124.08	100.65			1.1914	1.2633	26.88	15	0	Median	1.4533	1.2782	52.028	3	0	Median	0.88761	1.0887	1.752	2	0	Median	1.1115	1.1546	18.339	5	0	Median	1.2337	1.3164	25.805	5	0	Median	2063200000	946910000	1116300000	219710000	119670000	100040000	263210000	123020000	140180000	819620000	324430000	495190000	760690000	379780000	380910000	19980	1242	18934	123023;123024;123025;123026;123027;123028;123029;123030;123031;123032;123033;123034;123035;123036;123037	166837;166838;166839;166840;166841;166842;166843;166844;166845;166846;166847;166848;166849;166850;166851;166852;166853;166854;166855	166845			19	
GLWIPEGEK	1	Unmodified	1027.5338	0.53384611	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.052	53.534	2	0.0012499	46352	160511_QHF_FH_JSI11i_2	78.334	53.412			1.4986	1.5094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4986	1.5094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108890000	41602000	67293000	0	0	0	0	0	0	108890000	41602000	67293000	0	0	0	19981	774	18935	123038	166856	166856			1	
GLWVPEGQR	0	Unmodified	1040.5403	0.54032847	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	43.926	43.102	2	0.0024461	36662	160511_QHF_FH_JSI12i_3	75.738	50.815			0.99765	1.012	10.622	5	0	Median	1.1319	0.94177	NaN	1	0	Median	0.81197	1.012	NaN	1	0	Median	0.99765	1.003	NaN	1	0	Median	1.0707	1.1331	13.618	2	0	Median	427540000	211860000	215680000	68590000	32705000	35885000	88237000	43514000	44723000	132510000	67044000	65465000	138200000	68593000	69608000	19982	3146	18936	123039;123040;123041;123042;123043	166857;166858;166859;166860	166860			4	
GLWVPQHQSIQEYWK	1	Unmodified	1897.9475	0.9475175	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	74.419	73.496	3	3.989E-05	64750	160511_QHF_FH_JSI11i_3	92.265	76.127			1.1413	0.96498	40.855	5	3	Median	1.699	1.4372	56.334	2	2	Median	1.4002	1.6128	NaN	1	1	Median	0.99096	0.93689	NaN	1	0	Median	0.81993	0.82892	NaN	1	0	Median	200600000	97350000	103250000	20897000	6468200	14429000	14513000	5355100	9157600	80051000	40151000	39900000	85139000	45375000	39764000	19983	3473	18937	123044;123045;123046;123047;123048	166861;166862;166863;166864;166865;166866;166867	166861			7	
GLYDVVSVLR	0	Unmodified	1119.6288	0.62880913	480	O75144	ICOSLG	ICOS ligand	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.365	82.365	2	0.00041204	73576	160511_QHF_FH_JSI11i_3	75.378	49.641			1.4728	1.3947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4728	1.3947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23828000	13453000	10375000	0	0	0	0	0	0	23828000	13453000	10375000	0	0	0	19984	480	18938	123049;123050	166868;166869;166870	166869			3	
GLYIAKQATGGAAK	2	Acetyl (K)	1389.7616	0.76161421	3494	Q8N0X7	SPG20	Spartin	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		54.781	43.956	2	0.00042518	25525	160513_QHF_FH_JSI11Kac_4	106.29	79.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3317200	3317200	0	0	0	0	0	0	0	3317200	3317200	0	0	0	0	19985	3494	18939	123051;123052	166871;166872	166871	2870		2	
GLYMANDLK	1	Unmodified	1023.5059	0.5059168	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.4	5.31	1	3						1		1	2	2		44.014	43.284	2	0.0011242	38072	160511_QHF_FH_JSI10i_2	80.219	47.378			0.27297	0.27969	45.385	4	4	Median	0.24503	0.20413	NaN	1	1	Median	0.23506	0.27969	39.057	2	2	Median	0.51648	0.52236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1305300000	1041000000	264290000	386670000	293400000	93266000	588540000	497070000	91469000	330070000	250510000	79560000	0	0	0	19986	5526	18940	123053;123054;123055;123056;123057	166873;166874;166875;166876;166877;166878	166878			6	
GLYMANDLKLLR	1	Acetyl (K)	1447.7857	0.78572048	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	84.253	75.128	2	2.1165E-24	41525	160513_QHF_FH_JSI11Kac_6	172.8	131.64			0.66432	0.64491	54.233	3	1	Plateau	1.9661	1.6812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66432	0.64491	NaN	1	0	Median	0.64298	0.6704	NaN	1	0	Median	146040000	87677000	58365000	24949000	10731000	14218000	0	0	0	85720000	53614000	32105000	35373000	23332000	12042000	19987	5526	18941	123058;123059;123060;123061	166879;166880;166881	166879	3470		3	
GLYMANDLKLLR	1	Acetyl (K);Oxidation (M)	1463.7806	0.7806351	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15	0								2				1	1	79.915	69.404	2	4.3977E-12	36859	160513_QHF_FH_JSI11Kac_5	120.09	95.747			0.65422	0.66947	19.238	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61242	0.58433	NaN	1	0	Median	0.69888	0.76703	NaN	1	1	Median	8108400	4615100	3493300	0	0	0	0	0	0	6776000	4075400	2700700	1332300	539750	792590	19988	5526	18941	123062;123063	166882;166883;166884	166883	3470	2686	3	
GLYPQLAVPDAFNSSRK	1	Unmodified	1861.9686	0.96864688	2500	Q14147	DHX34	Probable ATP-dependent RNA helicase DHX34	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				73.938	72.47	3	0.015791	59650	160511_QHF_FH_JSI9i_3	37.555	27.498			1.2307	1.0588	NaN	1	1	Median	1.2307	1.0588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6412200	2846800	3565400	6412200	2846800	3565400	0	0	0	0	0	0	0	0	0	19989	2500	18942	123064	166885	166885			1	
GLYQGFNVSVQGIIIYR	0	Unmodified	1926.0363	0.036332512	826;1013	P05141;P12235	SLC25A5;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0			By MS/MS		16	0									1			1		105.44	96.022	2	0.0044146	54857	160513_QHF_FH_JSI11Kac_6	73.082	58.824			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19990	826;1013	18943	123065	166886	166886			1	
GLYSDTELQQCLAAAQAASQHVFR	0	Unmodified	2663.2762	0.27619822	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		97.438	97.438	3	7.9912E-08	86805	160511_QHF_FH_JSI11i_3	61.524	54.801			0.57371	0.53283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57371	0.53283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28766000	21113000	7652800	0	0	0	0	0	0	28766000	21113000	7652800	0	0	0	19991	4927	18944	123066	166887	166887			1	
GLYVYSLQMK	1	Unmodified	1200.6213	0.62128091	4822	Q9HAD4	WDR41	WD repeat-containing protein 41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	73.998	64.688	2	8.3729E-12	35068	160513_QHF_FH_JSI11Kac_6	147.29	121.55			0.57787	0.5421	26.797	6	1	Median	0.5657	0.47811	3.7819	2	1	Median	0.53196	0.63418	44.463	2	0	Median	0.79413	0.75513	NaN	1	0	Median	0.57188	0.59843	NaN	1	0	Median	444180000	252190000	191990000	65712000	41691000	24021000	264520000	148350000	116180000	81201000	44630000	36571000	32741000	17523000	15218000	19992	4822	18945	123067;123068;123069;123070;123071;123072	166888;166889;166890;166891;166892;166893;166894;166895;166896;166897	166889			10	
GLYVYSLQMK	1	Oxidation (M)	1216.6162	0.61619553	4822	Q9HAD4	WDR41	WD repeat-containing protein 41	yes	yes	0	0	1	0		By MS/MS	By MS/MS		15.3	0.471								2	1		2	1		63.135	52.781	2	0.0056437	26724	160513_QHF_FH_JSI10Kac_5	75.38	37.087			0.83836	0.81153	25.49	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87085	1.0237	30.657	2	1	Median	0.83836	0.81153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13271000	6978000	6293000	0	0	0	4492800	2420700	2072200	8778100	4557300	4220800	0	0	0	19993	4822	18945	123073;123074;123075	166898;166899;166900	166899		2533	1	
GMAAAGNYAWVNR	0	Oxidation (M)	1395.6354	0.63536784	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		36.911	35.619	2	1.5166E-09	31056	160511_QHF_FH_JSI11i_3	113.71	96.681			1.0946	0.90326	50.384	3	2	Median	1.0946	0.90326	NaN	1	0	Median	1.1551	1.3891	61.983	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109460000	49048000	60413000	32473000	16203000	16270000	76987000	32845000	44142000	0	0	0	0	0	0	19994	5596	18946	123076;123077;123078;123079	166901;166902;166903;166904;166905	166901		2705	5	
GMAAAGNYAWVNR	0	Unmodified	1379.6405	0.64045322	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.51		3	3					1	3	3	3	2	2	50.775	46.716	2	3.8965E-156	38980	160511_QHF_FH_JSI10i_3	308.99	305.41			0.98634	0.98049	12.165	8	1	Median	1.2246	0.98119	17.159	3	0	Median	0.85646	1.0093	1.41	2	0	Median	0.98634	0.97873	0.15104	2	0	Median	0.82633	0.8345	NaN	1	1	Median	748430000	361160000	387270000	279990000	127670000	152320000	252700000	133400000	119300000	95471000	33799000	61672000	120270000	66296000	53976000	19995	5596	18946	123080;123081;123082;123083;123084;123085;123086;123087;123088;123089	166906;166907;166908;166909;166910;166911;166912;166913;166914;166915;166916;166917;166918;166919;166920;166921	166908			16	
GMAFLHTLEPLIPR	0	Unmodified	1593.8701	0.87011881	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	4	2	4	3	93.025	90.378	2;3	1.6945E-31	43109	160513_QHF_FH_JSI11Kac_6	172.76	149.53			1.015	0.8987	33.975	12	3	Median	1.0442	0.87739	13.938	4	2	Median	0.63126	0.75218	22.709	2	1	Median	0.98091	1.049	14.295	4	0	Linear	0.53104	0.55783	68.629	2	0	Median	444530000	240410000	204120000	125590000	64399000	61195000	31377000	18648000	12729000	232860000	128580000	104280000	54696000	28785000	25911000	19996	2403	18947	123090;123091;123092;123093;123094;123095;123096;123097;123098;123099;123100;123101;123102	166922;166923;166924;166925;166926;166927;166928;166929;166930;166931;166932;166933;166934;166935;166936;166937;166938	166929			17	
GMAFTLQER	0	Unmodified	1051.5121	0.51206481	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	46.633	46.031	2	5.7799E-06	40492	160511_QHF_FH_JSI11i_3	114.5	99.116			0.99737	1.0154	2.5472	3	1	Median	NaN	NaN	NaN	0	0	Median	0.92742	1.0562	NaN	1	1	Median	1.055	1.0071	NaN	1	0	Median	0.99737	1.0154	NaN	1	0	Median	225010000	118140000	106870000	0	0	0	34629000	20196000	14433000	81567000	37905000	43662000	108810000	60036000	48776000	19997	1225	18948	123103;123104;123105;123106	166939;166940;166941;166942;166943	166940			5	
GMAGDWK	1	Unmodified	763.33231	0.33230953	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	0	0			By MS/MS		2	0		1										1		19.598	19.289	2	0.011077	15794	160511_QHF_FH_JSI11i_2	63.148	37.321			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19998	953;1699	18949	123107	166944	166944			1	
GMALFFYSHACNR	0	Unmodified	1572.6966	0.69658789	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	69.316	60.905	2;3	5.7805E-41	33358	160513_QHF_FH_JSI10Kac_6	201.33	193.11			0.97805	1.0553	15.037	4	0	Median	1.5329	1.3163	NaN	1	0	Median	0.85117	1.0139	12.497	2	0	Median	1.0375	1.0056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	266260000	129030000	137230000	24174000	8017100	16157000	196400000	99964000	96440000	45679000	21045000	24633000	0	0	0	19999	129	18950	123108;123109;123110;123111;123112;123113;123114	166945;166946;166947;166948;166949;166950	166949			6	
GMALFFYSHACNR	0	Oxidation (M)	1588.6915	0.69150251	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	55.442	46.238	3	5.4737E-06	25374	160513_QHF_FH_JSI10Kac_6	96.745	90.016			0.87851	1.0411	28.043	3	0	Plateau	1.192	1.0301	NaN	1	0	Median	0.87851	1.0411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5414	1.683	NaN	1	0	Median	56378000	27708000	28671000	14141000	5483500	8657800	33935000	19460000	14476000	0	0	0	8301600	2764500	5537200	20000	129	18950	123115;123116;123117	166951;166952;166953	166953		58	3	
GMAPNGLPNHIMAPVWK	1	Unmodified	1831.9226	0.92256508	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		2	1	73.924	73.488	3	6.6354E-07	63917	160511_QHF_FH_JSI12i_3	115.91	107.57			1.1868	1.1092	44.654	4	4	Median	3.1366	2.55	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1868	1.1092	8.0772	2	2	Median	0.95439	0.96589	NaN	1	1	Median	241890000	109030000	132870000	47577000	11134000	36444000	0	0	0	134250000	63324000	70924000	60067000	34569000	25498000	20001	3756	18951	123118;123119;123120;123121	166954;166955;166956;166957;166958	166958			5	
GMAQEER	0	Unmodified	819.3545	0.35450154	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	5.022	4.6168	2	0.011852	2675	160511_QHF_FH_JSI10i_1	76.134	62.149			1.0896	1.2712	16.543	2	2	Median	NaN	NaN	NaN	0	0	Median	0.936	1.1308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2683	1.4289	NaN	1	1	Median	745260000	339930000	405330000	0	0	0	630460000	287650000	342810000	0	0	0	114800000	52282000	62514000	20002	97	18952	123122;123123	166959;166960	166960			2	
GMAVTISVK	1	Unmodified	904.50519	0.50518852	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	3	1	2	2	46.456	43.576	2	0.00050337	37180	160511_QHF_FH_JSI12i_2	79.474	58.849			1.2418	1.224	23.451	4	2	Linear	1.042	0.90435	NaN	1	1	Median	0.6368	0.75418	NaN	1	1	Median	1.2385	1.218	NaN	1	0	Median	1.0713	1.2102	NaN	1	0	Median	129910000	67033000	62873000	33934000	16102000	17832000	18331000	10843000	7487700	41424000	20651000	20773000	36217000	19437000	16780000	20003	2490	18953	123124;123125;123126;123127;123128;123129;123130;123131	166961;166962;166963;166964;166965;166966;166967	166961			7	
GMAVTISVK	1	Oxidation (M)	920.5001	0.50010314	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	1.04					2	7	3	6		2	7	5	4	37.055	27.289	2	0.00010923	6100	160513_QHF_FH_JSI9Kac_3	107.01	67.006			0.94434	0.91762	16	18	1	Median	1.012	0.82517	0.18316	2	0	Median	0.73035	0.85483	9.7265	7	1	Median	1.1336	1.095	17.049	5	0	Median	1.0573	1.0616	7.1523	4	0	Linear	134380000	69247000	65132000	43744000	21558000	22185000	38632000	21719000	16914000	24589000	11711000	12877000	27414000	14259000	13155000	20004	2490	18953	123132;123133;123134;123135;123136;123137;123138;123139;123140;123141;123142;123143;123144;123145;123146;123147;123148;123149	166968;166969;166970;166971;166972;166973;166974;166975;166976;166977;166978;166979;166980;166981;166982;166983;166984;166985;166986;166987;166988;166989;166990	166977		1974	22	
GMDADPYNPVLPTNR	0	Unmodified	1658.7723	0.77225526	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.541	56.889	2	3.4731E-05	51703	160511_QHF_FH_JSI12i_1	153.81	148.53			1.0735	0.99411	16.044	4	0	Median	1.1155	0.90869	NaN	1	0	Median	1.0384	1.2535	NaN	1	0	Median	1.1097	1.0875	NaN	1	0	Median	0.85934	0.89396	NaN	1	0	Median	364630000	195860000	168760000	81411000	41112000	40299000	79591000	46311000	33281000	100400000	50349000	50048000	103230000	58091000	45136000	20005	4753	18954	123150;123151;123152;123153	166991;166992;166993;166994;166995;166996	166993			6	
GMDDDRGPR	0	Unmodified	1017.4298	0.42979174	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	3	4	5.9956	5.7328	2;3	4.0184E-22	3531	160511_QHF_FH_JSI11i_2	186.91	172.39			0.9788	1.039	13.762	10	0	Median	1.2175	1.039	0.02137	2	0	Median	0.80962	0.99166	NaN	1	0	Median	1.0797	1.0888	18.988	3	0	Plateau	0.92058	0.97462	17.348	4	0	Median	1526000000	750570000	775400000	296150000	131350000	164810000	129790000	73084000	56709000	628970000	303360000	325610000	471050000	242770000	228280000	20006	2502	18955	123154;123155;123156;123157;123158;123159;123160;123161;123162;123163	166997;166998;166999;167000;167001;167002;167003;167004;167005;167006;167007	167002			11	
GMDGSTNETASSR	0	Unmodified	1311.5361	0.53610731	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.5965	7.2593	2	9.8274E-53	5138	160511_QHF_FH_JSI10i_1	214.67	210.37			0.88636	0.89075	10.817	4	1	Median	1.2101	0.99749	NaN	1	1	Median	0.69715	0.83577	NaN	1	0	Median	0.84285	0.79075	NaN	1	0	Median	0.93211	0.94936	NaN	1	0	Median	273400000	148900000	124500000	46623000	22561000	24062000	78138000	45057000	33081000	64100000	36934000	27166000	84535000	44343000	40191000	20007	5577	18956	123164;123165;123166;123167	167008;167009;167010;167011	167010			4	
GMDGSTNETASSR	0	Oxidation (M)	1327.531	0.53102193	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		5.1189	-2.2019	2	0.053283	1663	160513_QHF_FH_JSI11Kac_3	33.961	33.961			1.1434	1.0879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1434	1.0879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1878600	826610	1052000	0	0	0	0	0	0	1878600	826610	1052000	0	0	0	20008	5577	18956	123168	167012	167012			1	
GMDKILLSSGR	1	Acetyl (K)	1217.6438	0.64380726	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	67.453	56.653	2	0.00037608	30514	160513_QHF_FH_JSI11Kac_5	89.548	78.058			0.89913	1.0429	201.12	5	2	Median	NaN	NaN	NaN	0	0	Median	3.7121	4.3746	202.77	2	1	Median	0.29923	0.29455	4.248	2	0	Median	12.189	13.104	NaN	1	1	Median	62951000	17514000	45436000	0	0	0	27849000	2206200	25643000	18921000	14302000	4619300	16180000	1006300	15174000	20009	2090	18957	123169;123170;123171;123172;123173	167013;167014;167015;167016	167016	2172		4	
GMDKILLSSGR	1	Acetyl (K);Oxidation (M)	1233.6387	0.63872189	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		51.374	40.712	2	0.0012726	22627	160513_QHF_FH_JSI11Kac_5	81.865	61.536			0.022709	0.021912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.022709	0.021912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3433800	3380400	53434	0	0	0	0	0	0	3433800	3380400	53434	0	0	0	20010	2090	18957	123174	167017	167017	2172	1750	1	
GMDLQPGNALK	1	Unmodified	1142.5754	0.57539335	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	44.845	44.174	2	0.00079636	40290	160511_QHF_FH_JSI12i_1	68.371	59.157			0.9969	0.97885	8.1273	4	0	Median	1.1386	0.94582	NaN	1	0	Median	0.99382	1.1348	NaN	1	0	Median	0.99998	0.98024	NaN	1	0	Median	0.95603	0.97746	NaN	1	0	Median	507210000	242590000	264610000	115290000	45095000	70191000	118970000	63844000	55126000	139590000	72985000	66603000	133360000	60669000	72694000	20011	3506	18958	123175;123176;123177;123178	167018;167019;167020	167018			2	
GMDNQGHKNLK	2	Acetyl (K)	1282.6088	0.60881874	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			16.903	6.9783	2	0.033917	6630	160513_QHF_FH_JSI10Kac_4	46.158	38.512			0.88931	1.0102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88931	1.0102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2627500	1348400	1279100	0	0	0	2627500	1348400	1279100	0	0	0	0	0	0	20012	1581	18959	123179	167021	167021	1597		1	
GMDNQGHKNLK	2	Acetyl (K);Oxidation (M)	1298.6037	0.60373336	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.471							4	2			2	1	3	9.0114	0.45006	2;3	0.0024015	3374	160513_QHF_FH_JSI12Kac_4	65.305	60.693			0.81865	0.92683	49.624	6	1	Median	NaN	NaN	NaN	0	0	Median	0.78879	0.92974	7.401	2	0	Median	3.0516	3.0412	NaN	1	1	Median	0.8103	0.88843	7.1538	3	0	Median	32817000	17067000	15750000	0	0	0	9414500	5453400	3961100	4802800	820060	3982800	18600000	10794000	7806000	20013	1581	18959	123180;123181;123182;123183;123184;123185	167022;167023;167024;167025;167026	167025	1597	1242	4	
GMDPVDK	1	Unmodified	760.34254	0.34253987	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.695	13.257	2	0.013531	11000	160511_QHF_FH_JSI12i_1	69.998	69.998			1.1662	1.1044	8.1712	4	4	Median	1.3196	1.077	NaN	1	1	Median	0.95097	1.1325	NaN	1	1	Median	1.0896	1.0608	NaN	1	1	Median	1.2482	1.2706	NaN	1	1	Median	513540000	247450000	266090000	136610000	61852000	74763000	124320000	66510000	57813000	123800000	58246000	65558000	128800000	60838000	67960000	20014	344	18960	123186;123187;123188;123189	167027;167028;167029;167030	167028			4	
GMDQGLLGMCPGER	0	Unmodified	1519.6582	0.65815348	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	58.936	58.256	2	4.1354E-10	52808	160511_QHF_FH_JSI11i_1	151.55	100.64			1.0682	1.2551	29.246	5	0	Median	1.8383	1.5588	NaN	1	0	Median	1.0682	1.2551	NaN	1	0	Median	0.89957	0.86488	3.5481	2	0	Median	1.4929	1.5275	NaN	1	0	Median	292930000	124470000	168460000	37167000	6986000	30181000	52338000	24695000	27642000	136160000	69566000	66596000	67263000	23223000	44040000	20015	3973	18961	123190;123191;123192;123193;123194;123195	167031;167032;167033;167034	167032			4	
GMDVYGYLLAR	0	Unmodified	1256.6223	0.62234354	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1		1	2	1	80.29	77.334	2	0.00013855	68333	160511_QHF_FH_JSI12i_2	83.998	73.475			0.86785	0.91164	11.324	4	0	Median	NaN	NaN	NaN	0	0	Median	0.6786	0.84383	NaN	1	0	Median	0.90704	0.89453	13.611	2	0	Median	0.92404	1.0228	NaN	1	0	Median	109870000	53680000	56191000	0	0	0	19559000	9871300	9687600	62736000	30811000	31925000	27576000	12997000	14578000	20016	5351	18962	123196;123197;123198;123199	167035;167036;167037;167038	167035			4	
GMEELIPLVNK	1	Unmodified	1241.669	0.66895938	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	1	2	3	79.5	78.897	2	4.9688E-06	71359	160511_QHF_FH_JSI10i_1	123.35	109.35			1.164	0.94804	50.881	7	4	Median	1.164	0.94586	NaN	1	1	Median	0.75868	0.90737	NaN	1	1	Median	1.7187	1.6704	80.108	2	0	Median	1.1814	1.2356	53.054	3	2	Median	1175800000	385760000	790080000	48530000	21525000	27005000	124930000	72382000	52544000	523310000	133260000	390040000	479080000	158590000	320490000	20017	1711	18963	123200;123201;123202;123203;123204;123205;123206	167039;167040;167041;167042;167043;167044;167045	167043			7	
GMEELKK	2	Unmodified	833.43169	0.43168922	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		10.744	10.543	2	0.027394	8053	160511_QHF_FH_JSI11i_2	65.313	42.383			1.7065	1.6876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7065	1.6876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44383000	14192000	30192000	0	0	0	0	0	0	44383000	14192000	30192000	0	0	0	20018	203	18964	123207	167046	167046			1	
GMEFEGAIIALFHLLATR	0	Oxidation (M)	2004.0503	0.050268017	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	100.27	91.836	3	2.0634E-56	52524	160513_QHF_FH_JSI9Kac_6	193.8	184.04			1.0324	1.0182	7.8115	4	0	Median	1.1932	1.0119	NaN	1	0	Median	0.85397	1.0245	NaN	1	0	Median	1.1987	1.1434	NaN	1	0	Median	0.89332	0.947	NaN	1	0	Median	1449300000	756690000	692570000	422840000	193170000	229670000	472470000	285650000	186820000	241570000	102700000	138860000	312390000	175170000	137220000	20019	1960	18965	123208;123209;123210;123211	167047;167048;167049;167050;167051	167049		1630	5	
GMEFEGAIIALFHLLATR	0	Unmodified	1988.0554	0.055353395	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			14.3	2.36				1					2	1	2			101.7	93.68	3	4.1473E-84	53460	160513_QHF_FH_JSI9Kac_6	220.8	202.01			1.0205	1.0152	10.786	2	0	Median	1.301	1.0956	NaN	1	0	Median	0.80049	0.94065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1746800000	850370000	896470000	839460000	342980000	496480000	907380000	507390000	399990000	0	0	0	0	0	0	20020	1960	18965	123212;123213;123214	167052;167053;167054;167055	167053			4	
GMELSVLDSLNAR	0	Unmodified	1403.7079	0.70786408	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	81.352	80.432	2	4.9315E-07	71083	160511_QHF_FH_JSI9i_2	94.616	77.18			1.0579	1.2342	4.9934	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0291	1.2786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0874	1.1914	NaN	1	0	Median	59046000	30015000	29031000	0	0	0	21926000	10534000	11392000	0	0	0	37120000	19481000	17639000	20021	179	18966	123215;123216;123217;123218	167056;167057;167058;167059	167057			4	
GMEPIEVPLEENSER	0	Unmodified	1727.8036	0.80361496	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.227	65.626	2	9.0052E-07	59383	160511_QHF_FH_JSI10i_1	141.73	95.133			0.94521	0.91832	15.528	4	4	Median	0.95963	0.80118	NaN	1	1	Median	1.0163	1.149	NaN	1	1	Median	0.88451	0.87173	NaN	1	1	Median	0.93101	0.96741	NaN	1	1	Median	124000000	56573000	67423000	23644000	10859000	12785000	30808000	14728000	16080000	27703000	9913300	17790000	41841000	21072000	20769000	20022	4052	18967	123219;123220;123221;123222	167060;167061;167062;167063	167062			4	
GMFASTHLILK	1	Unmodified	1216.6638	0.66381443	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	58.615	57.507	2;3	6.6609E-07	48259	160511_QHF_FH_JSI10i_3	112.13	106.09			1.0224	0.84423	43.86	3	1	Plateau	1.0224	0.84423	NaN	1	0	Median	0.87203	0.9765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.42228	0.42926	NaN	1	1	Median	96834000	54486000	42347000	41094000	21190000	19904000	21763000	12307000	9455900	0	0	0	33976000	20988000	12988000	20023	3843	18968	123223;123224;123225;123226	167064;167065;167066;167067	167064			4	
GMFEPYLK	1	Unmodified	983.47864	0.47863942	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.349	56.409	2	0.0022136	48659	160511_QHF_FH_JSI11i_2	81.784	50.494			0.89904	0.88107	42.959	4	0	Median	0.94787	0.81517	NaN	1	0	Median	0.7518	0.93349	NaN	1	0	Median	0.85272	0.8316	NaN	1	0	Median	1.8002	2.0103	NaN	1	0	Median	492720000	252560000	240160000	110150000	57699000	52451000	110400000	54197000	56201000	152000000	79766000	72231000	120170000	60894000	59279000	20024	107	18969	123227;123228;123229;123230	167068;167069;167070;167071;167072	167070			5	
GMFLAQINK	1	Unmodified	1020.5426	0.54263666	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	54.471	54.233	2	0.00014278	46443	160511_QHF_FH_JSI12i_3	94.262	82.751			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20025	5618	18970	123231;123232	167073;167074	167073			2	
GMFLISAAPPEMYEVHTASR	0	Unmodified	2206.0551	0.055095398	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		82.203	74.358	3	2.3244E-06	41818	160513_QHF_FH_JSI10Kac_6	77.391	69.001			0.97849	0.95468	6.8822	3	0	Median	0.99084	0.85945	NaN	1	0	Median	0.83731	0.97831	NaN	1	0	Median	0.97849	0.95468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116430000	56993000	59434000	34697000	17398000	17298000	49987000	25600000	24387000	31744000	13995000	17749000	0	0	0	20026	3915	18971	123233;123234;123235	167075;167076;167077;167078	167078			4	
GMFLSQEDVEAVSANATAATTVLR	0	Unmodified	2480.2217	0.22170303	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.71	100.62	3	1.4889E-07	88385	160511_QHF_FH_JSI9i_2	65.753	53.262			0.77083	0.6763	NaN	1	1	Median	0.77083	0.6763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18207000	11194000	7012300	18207000	11194000	7012300	0	0	0	0	0	0	0	0	0	20027	5371	18972	123236	167079	167079			1	
GMFPDNFVK	1	Unmodified	1053.4954	0.49535211	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.179	62.329	2	0.022082	55238	160511_QHF_FH_JSI10i_2	43.808	23.287			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20028	5664	18973	123237	167080	167080			1	
GMFTLFSYHPVPTEPLPIPK	1	Unmodified	2270.1809	0.18094784	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	3	2	1	2	96.36	92.23	3	2.591E-33	82025	160511_QHF_FH_JSI9i_3	185.13	176.94			0.84027	0.80946	18.599	8	5	Median	0.82359	0.7157	20.574	3	2	Plateau	0.81044	0.94184	20.4	2	2	Median	1.1029	1.0408	NaN	1	0	Median	0.71432	0.74132	11.417	2	1	Median	2193900000	1153900000	1040000000	877800000	440350000	437450000	395970000	201950000	194020000	274460000	152970000	121490000	645690000	358610000	287080000	20029	4653	18974	123238;123239;123240;123241;123242;123243;123244;123245	167081;167082;167083;167084;167085;167086;167087;167088;167089;167090;167091;167092	167085			12	
GMFTLFSYHPVPTEPLPIPK	1	Oxidation (M)	2286.1759	0.17586246	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	1	2		90.87	84.947	3	4.1151E-26	44029	160513_QHF_FH_JSI9Kac_6	156.73	148.54			1.1131	0.8639	25.9	3	1	Plateau	1.3187	1.1402	NaN	1	0	Median	1.1131	1.3338	NaN	1	1	Median	0.85299	0.80418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	169920000	81981000	87944000	48267000	25044000	23223000	39915000	21129000	18786000	81742000	35807000	45935000	0	0	0	20030	4653	18974	123246;123247;123248;123249	167093;167094;167095;167096	167094		2508	4	
GMFYNSYPQQDGK	1	Unmodified	1533.6558	0.65582851	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	3	2	42.487	41.677	2	1.6537E-40	35742	160511_QHF_FH_JSI11i_2	179.57	155.23			1.2128	1.1846	8.2105	8	1	Median	1.3991	1.1901	10.72	2	0	Median	0.95164	1.1343	5.3667	2	0	Median	1.1837	1.1649	9.7784	2	0	Median	1.2128	1.2725	9.3679	2	1	Median	423710000	199970000	223740000	73091000	28886000	44205000	111670000	60564000	51102000	136020000	63780000	72242000	102930000	46741000	56192000	20031	1615	18975	123250;123251;123252;123253;123254;123255;123256;123257;123258;123259	167097;167098;167099;167100;167101;167102;167103;167104;167105;167106;167107;167108;167109	167107			13	
GMGEAVQEFVDK	1	Unmodified	1308.602	0.60200203	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							1	2	2	2	60.256	59.547	2	4.265E-06	50902	160511_QHF_FH_JSI12i_2	123.8	113.28			0.92257	0.94806	39.423	6	5	Median	1.3843	1.1782	NaN	1	1	Median	0.97667	1.1853	72.617	2	2	Median	0.88131	0.84592	NaN	1	1	Median	0.81534	0.85864	30.132	2	1	Median	380650000	172270000	208380000	83186000	38887000	44299000	145140000	67648000	77495000	32007000	14526000	17480000	120310000	51212000	69102000	20032	1695	18976	123260;123261;123262;123263;123264;123265;123266	167110;167111;167112;167113;167114;167115;167116	167112			7	
GMGEAVQEFVDKEEK	2	Unmodified	1694.7822	0.78215124	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		60.688	60.688	3	0.0031149	53840	160511_QHF_FH_JSI11i_3	58.079	46.808			1.3642	1.2591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3642	1.2591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51272000	21756000	29517000	0	0	0	0	0	0	51272000	21756000	29517000	0	0	0	20033	1695	18977	123267;123268	167117;167118	167117			2	
GMGELLPTK	1	Unmodified	944.5001	0.50010314	3692	Q8TB72	PUM2	Pumilio homolog 2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		19.146	11.52	2	0.036898	8382	160513_QHF_FH_JSI11Kac_4	42.599	22.895			1.2476	1.2363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2476	1.2363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31532000	13619000	17913000	0	0	0	0	0	0	31532000	13619000	17913000	0	0	0	20034	3692	18978	123269	167119	167119			1	
GMGGAFVLVLYDELK	1	Unmodified	1610.8378	0.83781563	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	5.53	3	8	9	7	1				68	24	26	34	12	100.6	95.065	2;3	4.5909E-74	49486	160513_QHF_FH_JSI9Kac_6	217.83	0			0.96759	0.96614	31.509	53	13	Median	1.0553	0.87984	39.162	13	3	Median	0.87761	1.0349	29.114	17	6	Median	1.0692	1.0031	33.613	15	4	Median	0.86293	0.91928	11.762	8	0	Median	7086000000	3655500000	3430500000	1857500000	928350000	929170000	1660600000	894970000	765590000	2406000000	1199000000	1207000000	1161800000	633110000	528730000	20035	1014	18979	123270;123271;123272;123273;123274;123275;123276;123277;123278;123279;123280;123281;123282;123283;123284;123285;123286;123287;123288;123289;123290;123291;123292;123293;123294;123295;123296;123297;123298;123299;123300;123301;123302;123303;123304;123305;123306;123307;123308;123309;123310;123311;123312;123313;123314;123315;123316;123317;123318;123319;123320;123321;123322;123323;123324;123325;123326;123327;123328;123329;123330;123331;123332;123333;123334;123335;123336;123337;123338;123339;123340;123341;123342;123343;123344;123345;123346;123347;123348;123349;123350;123351;123352;123353;123354;123355;123356;123357;123358;123359;123360;123361;123362;123363;123364;123365	167120;167121;167122;167123;167124;167125;167126;167127;167128;167129;167130;167131;167132;167133;167134;167135;167136;167137;167138;167139;167140;167141;167142;167143;167144;167145;167146;167147;167148;167149;167150;167151;167152;167153;167154;167155;167156;167157;167158;167159;167160;167161;167162;167163;167164;167165;167166;167167;167168;167169;167170;167171;167172;167173;167174;167175;167176;167177;167178;167179;167180;167181;167182;167183;167184;167185;167186;167187;167188;167189;167190;167191;167192;167193;167194;167195;167196;167197;167198;167199;167200;167201;167202;167203;167204;167205;167206;167207;167208;167209;167210;167211;167212;167213;167214;167215;167216;167217;167218;167219;167220;167221;167222;167223;167224;167225;167226;167227;167228;167229	167173			108	
GMGGAFVLVLYDELKK	2	Unmodified	1738.9328	0.93277864	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.56			7						22	7	8	9	5	95.428	89.217	2;3	1.7423E-53	46689	160513_QHF_FH_JSI9Kac_6	193.96	0			1.0294	0.97844	22.833	28	3	Median	1.1462	0.92672	19.029	7	1	Median	0.6898	0.82797	29.577	7	1	Median	1.0383	1.0001	13.105	9	1	Median	1.0257	1.0824	10.821	5	0	Median	12403000000	6148100000	6255100000	2191400000	1080300000	1111100000	3794100000	2096700000	1697400000	4744100000	2137200000	2606900000	1673500000	833920000	839620000	20036	1014	18980	123366;123367;123368;123369;123370;123371;123372;123373;123374;123375;123376;123377;123378;123379;123380;123381;123382;123383;123384;123385;123386;123387;123388;123389;123390;123391;123392;123393;123394	167230;167231;167232;167233;167234;167235;167236;167237;167238;167239;167240;167241;167242;167243;167244;167245;167246;167247;167248;167249;167250;167251;167252;167253;167254;167255;167256;167257;167258;167259;167260;167261;167262;167263;167264;167265;167266;167267;167268;167269;167270;167271;167272;167273	167248			43	
GMGGAMDLVSSAK	1	Unmodified	1222.5686	0.56859341	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		4	4	4	3	55.862	51.437	2	5.8503E-12	29036	160513_QHF_FH_JSI11Kac_4	120.06	97.976			1.0118	0.99932	26.093	14	3	Median	1.2755	1.0294	6.9791	4	0	Median	0.72794	1.11	44.303	4	1	Linear	1.013	1.0255	2.5541	3	0	Plateau	0.96964	1.0488	11.254	3	2	Plateau	4231300000	2085700000	2145600000	850920000	366930000	483980000	1142400000	637060000	505370000	1344800000	688760000	656090000	893060000	392930000	500130000	20037	1865	18981	123395;123396;123397;123398;123399;123400;123401;123402;123403;123404;123405;123406;123407;123408;123409	167274;167275;167276;167277;167278;167279;167280;167281;167282;167283;167284;167285;167286;167287;167288;167289;167290;167291;167292	167284			18	
GMGGAMDLVSSAK	1	Oxidation (M)	1238.5635	0.56350803	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	39.374	38.502	2	0.00010387	34997	160511_QHF_FH_JSI12i_1	103.63	81.546			1.4505	1.446	45.607	6	3	Median	2.4225	1.9836	51.154	2	0	Median	1.2941	1.5134	NaN	1	1	Median	1.0216	1.0417	NaN	1	1	Median	1.0486	1.1214	58.632	2	1	Median	260380000	98387000	161990000	86660000	21817000	64843000	51882000	23397000	28486000	20407000	7313900	13094000	101430000	45859000	55566000	20038	1865	18981	123410;123411;123412;123413;123414;123415	167293;167294;167295;167296;167297;167298	167294		1546	6	
GMGGLFSVGETTAK	1	Unmodified	1353.6599	0.65985126	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	3	1	61.939	61.278	2	5.5629E-31	52734	160511_QHF_FH_JSI12i_3	196.88	183.29			0.89294	0.8898	24.702	7	5	Median	1.2655	1.0869	NaN	1	1	Median	0.7644	0.91711	15.892	2	1	Median	0.64924	0.66581	24.317	3	3	Median	0.98518	0.97004	NaN	1	0	Median	988050000	511020000	477030000	86074000	37633000	48441000	157520000	90061000	67464000	394520000	206010000	188520000	349930000	177320000	172610000	20039	5640	18982	123416;123417;123418;123419;123420;123421;123422;123423	167299;167300;167301;167302;167303;167304;167305;167306;167307;167308	167307			10	
GMGGLFSVGETTAK	1	Oxidation (M)	1369.6548	0.65476588	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	48.782	48.544	2	0.0007646	41513	160511_QHF_FH_JSI12i_3	108.9	98.38			1.3438	1.3354	18.658	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3438	1.3354	18.658	2	2	Median	85722000	37711000	48011000	0	0	0	0	0	0	0	0	0	85722000	37711000	48011000	20040	5640	18982	123424;123425	167309;167310	167309		2719	2	
GMGLSLMR	0	Unmodified	863.43573	0.43572874	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.71	0.452		2	5							1	3	2	1	51.088	50.277	2	0.0023911	42207	160511_QHF_FH_JSI10i_3	88.904	64.23			0.8512	0.92809	15.634	6	2	Median	1.3307	1.0515	NaN	1	0	Median	0.85745	1.017	0.26518	2	1	Median	0.8512	0.82902	3.2984	2	1	Median	0.72419	0.71402	NaN	1	0	Median	2173100000	1130200000	1042800000	532200000	221140000	311060000	715440000	385160000	330290000	574370000	312370000	262000000	351040000	211560000	139480000	20041	1650	18983	123426;123427;123428;123429;123430;123431;123432	167311;167312;167313;167314;167315	167311			5	
GMGLSLMR	0	Oxidation (M)	879.43064	0.43064337	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				35.874	34.417	2	0.0093865	28176	160511_QHF_FH_JSI9i_3	63.21	45.917			1.4901	1.1892	NaN	1	0	Median	1.4901	1.1892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93870000	35976000	57894000	93870000	35976000	57894000	0	0	0	0	0	0	0	0	0	20042	1650	18983	123433	167316;167317	167317		1316	2	
GMGLSMGTMICGWDK	1	Unmodified	1642.6976	0.69757545	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	3	2	1	88.508	88.039	2	9.495E-40	76458	160511_QHF_FH_JSI12i_3	234.17	229.38			0.95018	1.1408	22.436	7	3	Median	1.6571	1.4271	NaN	1	1	Median	0.9316	1.1408	24.602	3	2	Median	0.94604	0.90996	2.2834	2	0	Median	1.3091	1.3272	NaN	1	0	Median	336760000	157700000	179070000	11588000	4304800	7283700	60927000	35201000	25726000	97822000	46057000	51765000	166430000	72134000	94291000	20043	1303	18984	123434;123435;123436;123437;123438;123439;123440	167318;167319;167320;167321;167322;167323;167324;167325;167326;167327;167328;167329;167330;167331	167329			14	
GMGLSMGTMICGWDK	1	Oxidation (M)	1658.6925	0.69249007	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	1	0				By MS/MS	3	0			5										5	74.018	73.741	2	3.2887E-11	67953	160511_QHF_FH_JSI12i_3	108.56	102.18			1.6255	1.6662	19.107	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6255	1.6662	19.107	2	1	Median	43302000	13739000	29562000	0	0	0	0	0	0	0	0	0	43302000	13739000	29562000	20044	1303	18984	123441;123442;123443;123444;123445	167332;167333;167334;167335;167336;167337	167337		954;955;956	6	
GMGLVNHVFTEDNLK	1	Unmodified	1672.8243	0.82429083	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.527	62.704	2	3.0153E-22	55562	160511_QHF_FH_JSI11i_3	182.35	147.46			0.93486	0.97579	12.884	4	0	Median	1.1537	0.97171	NaN	1	0	Median	0.83819	0.97988	NaN	1	0	Median	1.0427	0.98874	NaN	1	0	Median	0.73205	0.75775	NaN	1	0	Median	148280000	80662000	67614000	19127000	8731200	10395000	27473000	15790000	11683000	60820000	26576000	34244000	40856000	29564000	11292000	20045	2241	18985	123446;123447;123448;123449	167338;167339;167340;167341;167342;167343;167344	167339			7	
GMGPGTPAGYGR	0	Unmodified	1119.5131	0.51312744	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.52	1	4	4					3		3	2	3	4	24.767	23.135	2	6.3032E-23	19344	160511_QHF_FH_JSI12i_3	177.7	158.92			1.2392	1.2498	15.48	10	1	Median	1.4106	1.1799	24.317	3	1	Median	1.0944	1.2765	NaN	1	0	Median	1.2961	1.2683	2.9458	3	0	Plateau	0.99725	1.0318	10.531	3	0	Plateau	984300000	456230000	528070000	182530000	84773000	97760000	37706000	18281000	19425000	387480000	161080000	226400000	376570000	192090000	184480000	20046	1222	18986	123450;123451;123452;123453;123454;123455;123456;123457;123458;123459;123460;123461	167345;167346;167347;167348;167349;167350;167351;167352;167353;167354;167355;167356;167357;167358;167359;167360;167361;167362	167362			18	
GMGPGTPAGYGR	0	Oxidation (M)	1135.508	0.50804206	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		1	3	23.917	23.266	2	0.00025889	19346	160511_QHF_FH_JSI12i_2	82.287	73.946			1.0896	1.1971	15.88	4	0	Linear	1.2881	1.092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0552	1.0423	NaN	1	0	Median	1.2953	1.3862	7.7507	2	0	Median	118140000	53522000	64616000	29574000	11678000	17896000	0	0	0	33095000	14193000	18902000	55468000	27650000	27817000	20047	1222	18986	123462;123463;123464;123465;123466	167363;167364;167365;167366;167367;167368;167369	167363		850	7	
GMGSLDAMDK	1	Unmodified	1023.4365	0.43651661	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	34.854	34.12	2	1.8571E-09	30907	160511_QHF_FH_JSI12i_1	132.01	128.08			0.93197	0.93493	16.944	5	3	Median	1.2784	1.0523	16.725	2	2	Median	0.86677	1.0097	NaN	1	0	Median	0.93197	0.90631	NaN	1	1	Median	0.7102	0.74337	NaN	1	0	Median	1288000000	593530000	694450000	375880000	161930000	213950000	242400000	106880000	135510000	356610000	165840000	190780000	313100000	158880000	154220000	20048	1015	18987	123467;123468;123469;123470;123471;123472	167370;167371;167372;167373;167374;167375;167376	167373			7	
GMGSLDAMDKHLSSQNR	1	Acetyl (K)	1887.8567	0.85672994	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.5	0.5								1	1		1	1		57.934	47.759	3	0.0004831	25813	160513_QHF_FH_JSI11Kac_6	93.181	83.259			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12262000	9987000	2275400	0	0	0	2275400	0	2275400	9987000	9987000	0	0	0	0	20049	1015	18988	123473;123474	167377;167378	167377	821		2	
GMGTALK	1	Unmodified	676.3578	0.357796	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.87	2	4	3				1	3		3	4	3	3	14.568	11.287	2	0.0041237	9637	160511_QHF_FH_JSI11i_2	100.07	66.709			1.0044	1.016	99.112	13	2	Median	1.5445	1.2831	162.8	3	0	Median	1.2751	1.5069	93.424	4	0	Median	1.0166	1.0015	103.24	3	1	Median	0.92866	1.016	13.717	3	1	Median	13590000000	4325000000	9265200000	2053200000	597130000	1456100000	3020100000	1391500000	1628700000	5942100000	1263300000	4678800000	2574800000	1073100000	1501600000	20050	4296	18989	123475;123476;123477;123478;123479;123480;123481;123482;123483;123484;123485;123486;123487	167379;167380;167381;167382;167383;167384;167385;167386;167387;167388;167389;167390;167391	167390			13	
GMGTVEGGDQSNPK	1	Unmodified	1375.6038	0.60379294	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	15.377	12.606	2	2.7753E-98	10626	160511_QHF_FH_JSI10i_1	261.52	240.65			1.1547	1.108	25.536	6	2	Median	1.1425	0.92759	NaN	1	0	Median	0.89901	1.0786	NaN	1	0	Median	1.167	1.1381	36.371	3	2	Median	1.2444	1.3137	NaN	1	0	Median	971320000	428800000	542520000	226870000	94160000	132710000	266530000	136430000	130100000	262770000	105480000	157300000	215140000	92732000	122410000	20051	2409	18990	123488;123489;123490;123491;123492;123493	167392;167393;167394;167395;167396;167397;167398;167399;167400	167398			9	
GMGTVEGGDQSNPK	1	Oxidation (M)	1391.5987	0.59870757	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.78	5.35	6				2	1				2	1	4	2	8.709	5.6921	2	6.9578E-10	10502	160511_QHF_FH_JSI9i_1	151.1	141.14			1.0848	1.1687	27.345	8	2	Median	1.2516	1.0155	47.388	2	1	Median	1.1071	1.3214	NaN	1	0	Median	1.3171	1.2682	29.771	3	1	Plateau	1.0875	1.1687	0.28865	2	0	Median	187620000	88341000	99283000	69961000	31440000	38520000	53915000	23751000	30163000	23996000	14728000	9267900	39752000	18421000	21332000	20052	2409	18990	123494;123495;123496;123497;123498;123499;123500;123501;123502	167401;167402;167403;167404;167405;167406;167407;167408;167409;167410	167407		1944	10	
GMGTVQK	1	Unmodified	719.36361	0.36360966	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.68	5	5	2				2	1	1	2	4	6	4	7.5831	5.2461	2	1.4258E-05	4789	160511_QHF_FH_JSI10i_1	144.29	121.67			0.91226	0.98669	34.238	16	0	Median	1.3139	1.0917	12.789	2	0	Median	0.89042	1.0674	59.833	4	0	Median	0.98228	0.99911	14.733	6	0	Median	0.75992	0.83359	11.2	4	0	Median	14367000000	7166100000	7200600000	3441000000	1315000000	2126000000	3578600000	1758300000	1820300000	3836500000	2005400000	1831100000	3510500000	2087400000	1423100000	20053	1591	18991	123503;123504;123505;123506;123507;123508;123509;123510;123511;123512;123513;123514;123515;123516;123517;123518	167411;167412;167413;167414;167415;167416;167417;167418;167419;167420;167421;167422;167423;167424;167425;167426;167427;167428	167418			18	
GMHYLHMEAPVK	1	Unmodified	1411.6741	0.67406154	5129	Q9NYL2	ZAK	Mitogen-activated protein kinase kinase kinase MLT	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	37.277	37.196	4	5.2582E-05	31562	160511_QHF_FH_JSI12i_3	61.344	54.214			1.1184	1.0855	12.557	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3027	1.1862	NaN	1	0	Median	0.96024	0.99324	NaN	1	0	Median	81876000	38682000	43193000	0	0	0	0	0	0	32156000	17035000	15121000	49720000	21647000	28073000	20054	5129	18992	123519;123520	167429	167429			1	
GMIFVCSATHK	1	Unmodified	1249.5947	0.59474858	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	3	4	4	4	42.08	37.326	2;3	1.6686E-14	20496	160513_QHF_FH_JSI11Kac_6	149.72	143.13			1.0488	1.0501	37.499	15	3	Median	1.2721	1.0501	8.8044	3	0	Median	0.82458	0.96011	12.668	4	1	Median	0.87888	0.85277	75.516	4	2	Median	1.1837	1.1823	16.438	4	0	Median	1186200000	597500000	588670000	202880000	87205000	115670000	395280000	215250000	180020000	276080000	131580000	144500000	311930000	163460000	148470000	20055	2665	18993	123521;123522;123523;123524;123525;123526;123527;123528;123529;123530;123531;123532;123533;123534;123535	167430;167431;167432;167433;167434;167435;167436;167437;167438;167439;167440;167441;167442;167443;167444;167445;167446;167447;167448;167449;167450;167451;167452;167453;167454;167455;167456;167457	167438			27	
GMIFVCSATHK	1	Oxidation (M)	1265.5897	0.5896632	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									7	2	3	1	1	32.983	24.289	2;3	0.00028591	13751	160513_QHF_FH_JSI10Kac_6	79.659	69.871			0.92559	0.91334	29.077	3	0	Median	0.92559	0.76726	NaN	1	0	Median	0.76629	0.91334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2523	1.3535	NaN	1	0	Median	22522000	12642000	9880000	6151400	3485700	2665700	10016000	5946400	4070100	0	0	0	6354400	3210100	3144200	20056	2665	18993	123536;123537;123538;123539;123540;123541;123542	167458;167459;167460;167461;167462;167463	167461		2089	5	
GMISTQPGSTPLASFK	1	Unmodified	1620.8181	0.81814282	5652	Q9Y597	KCTD3	BTB/POZ domain-containing protein KCTD3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	67.023	66.189	2	1.0005E-21	58954	160511_QHF_FH_JSI11i_3	135.6	119.35			0.34344	0.34602	25.21	3	3	Median	0.58279	0.50576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31429	0.32953	6.9045	2	2	Median	121750000	84352000	37401000	19369000	10649000	8720000	0	0	0	0	0	0	102380000	73703000	28681000	20057	5652	18994	123543;123544;123545;123546;123547	167464;167465;167466;167467;167468	167464			5	
GMITFESIEK	1	Unmodified	1153.5689	0.56891099	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.496	62.568	2	5.2398E-05	53758	160511_QHF_FH_JSI12i_2	104.17	74.358			0.81946	0.83471	16.286	3	3	Plateau	1.3078	1.1537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81946	0.83471	NaN	1	1	Median	0.84518	0.9504	NaN	1	1	Median	433110000	198780000	234330000	101260000	40868000	60389000	0	0	0	182320000	92780000	89537000	149540000	65134000	84403000	20058	4843	18995	123548;123549;123550;123551	167469;167470;167471;167472	167469			4	
GMITVTDPDLIEK	1	Unmodified	1430.7327	0.73268185	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.229	68.971	2	0.00070059	62422	160511_QHF_FH_JSI10i_1	83.045	68.838			0.56258	0.65602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56258	0.65602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51497000	35903000	15594000	0	0	0	51497000	35903000	15594000	0	0	0	0	0	0	20059	5	18996	123552	167473	167473			1	
GMKPTEGWK	2	Unmodified	1032.5063	0.50625115	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	17.877	17.916	2	0.015617	14393	160511_QHF_FH_JSI9i_3	69.423	42.12			1.1415	1.187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1415	1.187	NaN	1	1	Median	57841000	26443000	31399000	0	0	0	0	0	0	0	0	0	57841000	26443000	31399000	20060	3083	18997	123553;123554	167474;167475	167474			2	
GMKVIENR	1	Acetyl (K)	987.51715	0.51715019	73;2069;886;858	P06753;CON__Q3SX28;P07951;P67936	TPM3;TPM2;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	1	0	0	1			By MS/MS		14	0							1					1		33.82	24.581	2	0.010017	15352	160513_QHF_FH_JSI11Kac_4	78.113	53.169		+	0.13324	0.13081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13324	0.13081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9197300	8217700	979670	0	0	0	0	0	0	9197300	8217700	979670	0	0	0	20061	858;73;886;2069	18998	123555	167476	167476	48		1	
GMLDLLK	1	Unmodified	788.44661	0.44661101	3810	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	70.526	69.575	2	0.017885	59975	160511_QHF_FH_JSI12i_2	60.788	9.822			0.99819	1.0036	21.599	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88541	0.86147	NaN	1	0	Median	1.1253	1.1692	NaN	1	0	Median	15117000	7249300	7868100	0	0	0	0	0	0	8605400	3985700	4619700	6512000	3263700	3248300	20062	3810	18999	123556;123557	167477	167477			1	
GMLDPLEVHLLDFPNIVIK	1	Unmodified	2162.1809	0.18094784	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	102.25	102.19	3	8.9827E-13	88067	160511_QHF_FH_JSI12i_2	141.22	136.22			0.96521	1.0064	17.173	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70488	0.85998	NaN	1	0	Median	0.93798	0.91181	NaN	1	0	Median	1.1069	1.1756	8.0267	2	0	Median	405780000	227560000	178220000	0	0	0	123970000	79269000	44703000	62629000	32606000	30024000	219180000	115690000	103490000	20063	3101	19000	123558;123559;123560;123561	167478;167479;167480	167479			3	
GMLDTHHK	1	Unmodified	937.44399	0.44398525	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			6							2	2		2	6.5457	6.2197	2;3	0.00030334	3739	160511_QHF_FH_JSI12i_3	105.57	100.09			1.2088	1.0457	44.573	6	2	Median	1.2088	0.99811	8.6849	2	0	Median	0.86661	1.0059	3.3905	2	0	Median	NaN	NaN	NaN	0	0	Median	2.0553	2.0906	51.325	2	2	Median	2353300000	848070000	1505300000	142830000	67579000	75252000	305350000	181410000	123950000	0	0	0	1905200000	599080000	1306100000	20064	1839	19001	123562;123563;123564;123565;123566;123567	167481;167482;167483;167484;167485;167486;167487	167487			7	
GMLHEEKPGEQILEGGSESESAQK	2	Unmodified	2569.1966	0.1966105	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		39.935	39.935	3;4	1.4573E-11	35086	160511_QHF_FH_JSI11i_3	88.935	81.223			1.1699	1.1209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1699	1.1209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42326000	20755000	21572000	0	0	0	0	0	0	42326000	20755000	21572000	0	0	0	20065	2899	19002	123568;123569	167488;167489	167489			2	
GMLHQDHITFAMLLAR	0	Unmodified	1852.944	0.94402881	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	79.525	71.748	2;4	7.8452E-06	39772	160513_QHF_FH_JSI10Kac_6	150.49	121.68			1.088	1.0294	17.765	5	1	Median	1.088	0.91734	NaN	1	0	Median	0.83299	0.96571	9.0372	2	1	Median	1.3175	1.2679	NaN	1	0	Median	1.1936	1.3217	NaN	1	0	Median	234500000	123000000	111510000	31909000	15943000	15967000	161360000	88008000	73349000	27171000	12431000	14740000	14066000	6616300	7449800	20066	2517	19003	123570;123571;123572;123573;123574	167490;167491;167492;167493;167494;167495	167495			6	
GMLHQDHITFAMLLAR	0	2 Oxidation (M)	1884.9339	0.93385805	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	0				By MS/MS	16	0									2				2	72.248	62.623	3;4	0.00061641	32797	160513_QHF_FH_JSI12Kac_6	59.261	49.731			1.1042	1.2077	16.96	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1042	1.2077	16.96	2	0	Median	25765000	13219000	12546000	0	0	0	0	0	0	0	0	0	25765000	13219000	12546000	20067	2517	19003	123575;123576	167496;167497;167498	167497		1989;1990	3	
GMLLLMER	0	Unmodified	961.50889	0.50889369	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		66.943	65.95	2	0.005887	55322	160511_QHF_FH_JSI10i_3	64.265	45.489			1.4836	1.2624	33.302	3	0	Plateau	1.0468	0.85945	NaN	1	0	Median	0.62403	0.7346	NaN	1	0	Median	1.5005	1.3918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69033000	37951000	31082000	23467000	12745000	10722000	16835000	11097000	5737700	28731000	14109000	14622000	0	0	0	20068	5752	19004	123577;123578;123579	167499	167499			1	
GMLPAYYGILR	0	Unmodified	1252.6638	0.66381443	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		79.554	78.879	2	2.5591E-05	70364	160511_QHF_FH_JSI11i_3	100.15	91.929			0.83657	0.87006	50.29	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0581	1.2416	NaN	1	0	Median	0.66139	0.60969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29728000	17038000	12690000	0	0	0	9350000	5020200	4329800	20378000	12017000	8360300	0	0	0	20069	3198	19005	123580;123581	167500;167501;167502	167500			3	
GMLPDPK	1	Unmodified	756.38401	0.38401075	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.64	6	3	3			1	3	1		5	4	3	5	30.288	27.193	2	0.015942	23739	160511_QHF_FH_JSI10i_2	56.51	38.949			1.1612	1.012	32.324	15	5	Median	1.2952	1.0511	25.157	4	2	Median	1.1699	1.3995	21.507	3	1	Median	1.0731	1.0631	32.295	3	1	Median	0.75637	0.83167	40.938	5	1	Median	8690800000	4295100000	4395700000	1859200000	729890000	1129300000	2072500000	1014200000	1058300000	2527700000	1260600000	1267200000	2231400000	1290500000	940960000	20070	1014;826;1013	19006	123582;123583;123584;123585;123586;123587;123588;123589;123590;123591;123592;123593;123594;123595;123596;123597;123598	167503;167504;167505;167506;167507;167508;167509;167510;167511;167512;167513;167514;167515;167516;167517;167518;167519;167520;167521;167522;167523;167524;167525	167525			23	
GMLPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVR	1	Unmodified	3929.022	0.021951361	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.16	96.438	4	9.7512E-53	57012	160513_QHF_FH_JSI10Kac_6	154.99	145.01			0.91089	1.0569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91089	1.0569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86624000	33385000	53239000	0	0	0	86624000	33385000	53239000	0	0	0	0	0	0	20071	826	19007	123599	167526;167527	167527			2	
GMLPHKTK	2	Acetyl (K)	952.51642	0.51642191	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		23.963	15.897	2;3	0.0067688	9615	160513_QHF_FH_JSI11Kac_6	81.548	54.418			0.57949	0.60338	117.33	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4397	1.7098	11.279	2	0	Median	0.23705	0.22485	3.5734	2	0	Median	NaN	NaN	NaN	0	0	Median	91687000	66459000	25228000	0	0	0	22020000	9486700	12533000	69667000	56972000	12695000	0	0	0	20072	1497	19008	123600;123601;123602;123603	167528;167529;167530;167531;167532	167529	1513		5	
GMLREDAVLEYLK	1	Oxidation (M)	1551.7967	0.79667909	1270	P26038	MSN	Moesin	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	68.88	68.29	3	0.00014918	60685	160511_QHF_FH_JSI11i_3	83.729	77.292			1.044	1.1329	7.4151	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.044	1.2241	NaN	1	0	Median	1.2994	1.2019	NaN	1	0	Median	1.0418	1.0678	NaN	1	0	Median	1031000000	419920000	611100000	0	0	0	57046000	30900000	26146000	374830000	138440000	236390000	599130000	250580000	348560000	20073	1270	19009	123604;123605;123606	167533;167534;167535;167536	167533		898	4	
GMLREDAVLEYLK	1	Unmodified	1535.8018	0.80176447	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		6	8						2	5	6	3	2	77.437	76.019	2;3	4.7686E-11	68327	160511_QHF_FH_JSI11i_3	151.99	123.02			1.3322	1.1885	88.155	15	9	Median	1.8069	1.5247	87.946	4	3	Median	0.88161	1.0394	86.476	6	3	Median	1.2068	1.1445	135.35	3	2	Plateau	1.0944	1.1223	15.567	2	1	Median	10360000000	4506800000	5853300000	1014000000	305610000	708390000	2239700000	1049000000	1190700000	3765600000	1637600000	2128000000	3340800000	1514500000	1826200000	20074	1270	19009	123607;123608;123609;123610;123611;123612;123613;123614;123615;123616;123617;123618;123619;123620;123621;123622	167537;167538;167539;167540;167541;167542;167543;167544;167545;167546;167547;167548;167549;167550;167551;167552;167553;167554;167555;167556;167557;167558;167559;167560;167561;167562;167563	167539			27	
GMLREDSMMEYLK	1	Unmodified	1601.7252	0.72517041	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							4	5	3	2	66.809	65.947	2;3	2.8011E-22	55229	160511_QHF_FH_JSI10i_3	145.71	133.54			0.9453	1.0654	17.076	14	2	Median	1.362	1.1326	5.5409	4	0	Median	0.90038	1.0825	20.422	5	1	Median	0.94574	0.87495	6.9922	3	1	Plateau	0.80923	0.83235	0.74712	2	0	Median	3201100000	1603900000	1597200000	513360000	194850000	318510000	975800000	447910000	527890000	1103900000	604260000	499620000	608110000	356920000	251190000	20075	1426	19010	123623;123624;123625;123626;123627;123628;123629;123630;123631;123632;123633;123634;123635;123636	167564;167565;167566;167567;167568;167569;167570;167571;167572;167573;167574;167575;167576;167577;167578;167579;167580;167581;167582;167583;167584;167585;167586;167587;167588;167589	167570			26	
GMLREDSMMEYLK	1	Oxidation (M)	1617.7201	0.72008503	1426	P35241	RDX	Radixin	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								2	4	2	52.699	52.279	3	0.00072894	51416	160511_QHF_FH_JSI11i_3	76.728	68.129			1.1962	1.1395	69.01	7	2	Median	NaN	NaN	NaN	0	0	Median	2.0593	2.4675	135.82	2	0	Median	1.0397	0.97131	9.8787	3	2	Median	1.2238	1.2005	0.73951	2	0	Median	358000000	161220000	196790000	0	0	0	59166000	15549000	43618000	211610000	106930000	104680000	87220000	38732000	48488000	20076	1426	19010	123637;123638;123639;123640;123641;123642;123643;123644	167590;167591;167592;167593;167594	167591		1085;1086	5	
GMLSAITNVVQNTGK	1	Unmodified	1531.8028	0.8028271	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		78.063	77.233	2	2.273E-105	68952	160511_QHF_FH_JSI11i_3	304.68	284.47			0.87032	0.79976	23.005	5	4	Median	0.98594	0.79976	NaN	1	0	Median	0.87689	0.98269	0.32533	2	2	Median	0.65544	0.62344	6.5164	2	2	Median	NaN	NaN	NaN	0	0	Median	264820000	143710000	121110000	55206000	23839000	31367000	62112000	33558000	28553000	147500000	86316000	61189000	0	0	0	20077	3420	19011	123645;123646;123647;123648;123649	167595;167596;167597;167598;167599;167600	167596			6	
GMLTGVIAGAVFTSPAVGSILAAIR	0	Oxidation (M)	2387.3247	0.32465196	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		98.819	90.729	3	8.324E-06	51594	160513_QHF_FH_JSI9Kac_6	73.994	64.947			1.1976	1.0391	20.312	3	1	Plateau	1.1976	1.0391	NaN	1	0	Median	0.6035	0.71873	NaN	1	1	Median	1.0926	1.0019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	202570000	111700000	90875000	67505000	27572000	39933000	77533000	56886000	20646000	57536000	27240000	30296000	0	0	0	20078	2817	19012	123650;123651;123652	167601;167602	167601		2150	2	
GMLTGVIAGAVFTSPAVGSILAAIR	0	Unmodified	2371.3297	0.32973734	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	100.09	91.985	3	4.3769E-28	55377	160513_QHF_FH_JSI10Kac_6	146.06	137.67			1.1074	1.0085	8.5445	3	0	Plateau	1.26	1.1018	NaN	1	0	Median	0.82896	0.99474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1074	1.1787	NaN	1	0	Median	970310000	498390000	471920000	318680000	151530000	167140000	480640000	265530000	215110000	0	0	0	170990000	81325000	89668000	20079	2817	19012	123653;123654;123655	167603;167604	167604			2	
GMMAGPMAAFK	1	Unmodified	1110.5024	0.5024281	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	60.902	59.8	2	0.034028	48968	160511_QHF_FH_JSI9i_3	53.968	43.102			1.0698	1.1057	19.23	3	0	Plateau	1.8993	1.5474	NaN	1	0	Median	1.2917	1.4843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0698	1.0884	NaN	1	0	Median	305510000	136690000	168810000	44893000	15007000	29886000	72090000	28954000	43136000	0	0	0	188520000	92733000	95790000	20080	2827	19013	123656;123657;123658	167605;167606	167606			0	
GMMEAMLYHIMTRPGIPESSLLR	0	Unmodified	2632.2998	0.2997759	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.415	84.694	4	1.3293E-11	48132	160513_QHF_FH_JSI10Kac_6	97.776	90.064			1.1145	1.3072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1145	1.3072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236230000	100290000	135940000	0	0	0	236230000	100290000	135940000	0	0	0	0	0	0	20081	2305	19014	123659	167607	167607			1	
GMMEAMLYHIMTRPGIPESSLLR	0	Oxidation (M)	2648.2947	0.29469052	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			86.475	80.774	4	0.0036198	45396	160513_QHF_FH_JSI10Kac_6	42.612	39.15			1.0209	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0209	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60409000	26809000	33600000	0	0	0	60409000	26809000	33600000	0	0	0	0	0	0	20082	2305	19014	123660	167608	167608		1904;1905	0	
GMMSTVTEVR	0	Unmodified	1109.5209	0.52091494	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.12		6	2				1	4		2	3	5	3	38.656	34.783	2	2.0955E-09	30353	160511_QHF_FH_JSI9i_2	130.75	116.59			1.0677	1.0333	15.84	12	6	Median	1.2698	1.0632	3.0014	2	0	Median	0.90482	1.0758	26.265	2	1	Median	1.0355	1.0259	20.275	5	4	Median	0.88177	0.98271	14.256	3	1	Median	705050000	355920000	349130000	80974000	36446000	44528000	93792000	50301000	43491000	299700000	161090000	138610000	230590000	108080000	122500000	20083	2997	19015	123661;123662;123663;123664;123665;123666;123667;123668;123669;123670;123671;123672;123673	167609;167610;167611;167612;167613;167614;167615;167616;167617;167618;167619;167620;167621;167622;167623;167624;167625	167615			17	
GMNFSVVVFDTAPTGHTLR	0	Oxidation (M)	2064.0099	0.0098597649	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	75.804	69.697	3	1.6051E-08	36578	160513_QHF_FH_JSI9Kac_6	103.9	103.88			1.0263	1.0936	18.83	6	1	Median	1.1693	0.96943	21.291	2	1	Median	0.78654	0.92655	21.799	2	0	Median	1.3176	1.2876	NaN	1	0	Median	1.0382	1.1063	NaN	1	0	Median	605540000	290890000	314640000	157670000	66781000	90885000	187850000	100630000	87225000	90767000	40261000	50506000	169250000	83225000	86027000	20084	357	19016	123674;123675;123676;123677;123678;123679	167626;167627;167628;167629;167630;167631	167629		136	6	
GMNFSVVVFDTAPTGHTLR	0	Unmodified	2048.0149	0.014945143	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.85		1	1						6	3	2	1	2	82.332	75.562	2;3	3.4086E-275	41672	160513_QHF_FH_JSI10Kac_6	346.57	317.02			0.8673	0.88071	17.464	6	1	Median	0.82759	0.71094	8.0944	2	0	Median	0.80956	0.95499	14.502	2	0	Median	1.056	1.019	NaN	1	0	Median	0.84864	0.89992	NaN	1	1	Median	1469100000	797320000	671820000	328600000	193170000	135430000	948870000	497840000	451030000	104230000	55639000	48593000	87442000	50677000	36765000	20085	357	19016	123680;123681;123682;123683;123684;123685;123686;123687	167632;167633;167634;167635;167636;167637;167638;167639	167639			8	
GMNMYLTK	1	Unmodified	956.44596	0.44595908	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	2	1	3	39.361	38.408	2	0.0010799	32915	160511_QHF_FH_JSI12i_2	94.302	81.314			1.4189	1.4217	21.474	8	1	Median	1.4452	1.21	13.69	2	0	Median	1.0189	1.2039	41.696	2	1	Median	1.4815	1.5164	NaN	1	0	Median	1.4197	1.5583	18.965	3	0	Plateau	976830000	444630000	532200000	192430000	81454000	110980000	226530000	116630000	109900000	282620000	123360000	159260000	275250000	123190000	152070000	20086	1862	19017	123688;123689;123690;123691;123692;123693;123694;123695	167640;167641;167642;167643;167644;167645;167646	167640			6	
GMNQVLDVPLTVK	1	Unmodified	1412.7697	0.76973606	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			77.252	76.505	2	0.0092439	68093	160511_QHF_FH_JSI10i_2	46.796	39.59			1.1854	1.043	NaN	1	1	Median	1.1854	1.043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13150000	5762800	7387200	13150000	5762800	7387200	0	0	0	0	0	0	0	0	0	20087	4083	19018	123696;123697	167647;167648	167648			2	
GMPETTQPDK	1	Unmodified	1102.4965	0.49647433	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	16.346	14.281	2	0.0022808	12004	160511_QHF_FH_JSI11i_1	73.985	59.828			0.8517	0.84007	5.4735	4	2	Median	NaN	NaN	NaN	0	0	Median	0.689	0.79987	NaN	1	0	Median	0.87542	0.84007	5.1946	2	2	Median	0.84747	0.89443	NaN	1	0	Median	625280000	335580000	289710000	0	0	0	198370000	117210000	81157000	210550000	105080000	105470000	216360000	113290000	103070000	20088	732	19019	123698;123699;123700;123701	167649;167650;167651	167649			2	
GMPFGMGLGNTSR	0	Unmodified	1323.6064	0.6063759	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				64.579	63.077	2	0.0085284	51821	160511_QHF_FH_JSI9i_3	48.004	38.815			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20089	5464	19020	123702	167652	167652			1	
GMPQEER	0	Unmodified	845.37015	0.3701516	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	1	2	3	9.0398	6.5834	2	0.0072762	5656	160511_QHF_FH_JSI9i_1	88.029	46.727			1.1855	1.1264	31.854	7	1	Median	1.2897	1.0185	NaN	1	0	Median	0.91825	1.0643	NaN	1	0	Median	1.2104	1.1875	1.7063	2	0	Median	1.0588	1.1264	47.505	3	1	Median	4078000000	1969000000	2109000000	1123500000	508630000	614880000	1108300000	614160000	494110000	869880000	393960000	475920000	976310000	452250000	524060000	20090	2474	19021	123703;123704;123705;123706;123707;123708;123709	167653;167654;167655;167656;167657;167658;167659;167660;167661;167662;167663	167661			11	
GMPTGEAMVAFESR	0	Unmodified	1481.6643	0.66428471	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.643	62.738	2	0.0011976	54642	160511_QHF_FH_JSI11i_2	65.179	58.52			0.85299	1.1282	47.433	4	3	Linear	5.4136	4.6836	NaN	1	1	Median	2.033	2.3998	NaN	1	1	Median	1.5466	1.6237	NaN	1	0	Median	1.6576	1.8243	NaN	1	1	Median	89401000	28482000	60919000	13871000	2860300	11011000	16008000	4786800	11221000	37629000	13112000	24517000	21893000	7723400	14170000	20091	4996	19022	123710;123711;123712;123713	167664;167665;167666;167667;167668	167666			5	
GMPVTAR	0	Oxidation (M)	746.37451	0.3745087	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	5.91		8	2			2	2	3		3	2	5	7	8.1447	4.5143	2	0.0028108	1928	160513_QHF_FH_JSI12Kac_5	100.07	30.677			0.99201	1.0377	14.924	17	2	Median	1.1941	1.0281	16.394	3	1	Median	0.87768	1.0723	12.9	2	1	Median	1.0344	1.0042	21.152	5	0	Median	0.97862	1.0618	10.748	7	0	Median	3267300000	1588900000	1678400000	615180000	281430000	333740000	625620000	294550000	331080000	703720000	354600000	349110000	1322700000	658270000	664470000	20092	1333	19023	123714;123715;123716;123717;123718;123719;123720;123721;123722;123723;123724;123725;123726;123727;123728;123729;123730	167669;167670;167671;167672;167673;167674;167675;167676;167677;167678;167679;167680;167681;167682;167683;167684;167685	167681		977	17	
GMPVTAR	0	Unmodified	730.37959	0.37959407	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.2	4.56		1					4	1			1	1	4	17.473	12.132	2	4.9638E-05	8429	160513_QHF_FH_JSI11Kac_4	126.24	43.014			1.763	1.0308	40.972	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99198	0.98099	NaN	1	0	Median	1.3146	1.4508	48.339	2	2	Median	2989100000	671950000	2317200000	0	0	0	0	0	0	64651000	32688000	31963000	2924500000	639260000	2285200000	20093	1333	19023	123731;123732;123733;123734;123735;123736	167686;167687;167688;167689;167690;167691	167688			6	
GMQELGVHPDQETYTDYVIPCFDSVNSAR	0	Unmodified	3327.4812	0.48124155	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0.632	1	3	1							1	1		3	89.319	88.84	3	1.4351E-11	76747	160511_QHF_FH_JSI12i_2	76.611	76.356			1.4862	1.4391	18.592	5	3	Median	1.5687	1.3446	NaN	1	0	Median	0.87126	1.0542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4862	1.5817	8.7137	3	2	Median	128250000	56579000	71675000	20897000	8285900	12611000	20503000	12981000	7522800	0	0	0	86853000	35312000	51540000	20094	1544	19024	123737;123738;123739;123740;123741	167692;167693;167694;167695;167696;167697;167698;167699	167693			8	
GMQLHGVLR	0	Unmodified	1009.5491	0.54911902	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			31.439	30.056	3	0.00027413	24529	160511_QHF_FH_JSI9i_3	70.256	54.053			1.1089	1.0494	6.2815	2	0	Median	1.2485	1.0038	NaN	1	0	Median	0.9849	1.0971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68372000	32736000	35637000	48136000	21114000	27022000	20236000	11622000	8614200	0	0	0	0	0	0	20095	4399	19025	123742;123743	167700;167701	167701			2	
GMQLMHANAQR	0	Unmodified	1255.5914	0.59139454	1027	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7.2	6.47		7	6						7	5	9	5	1	21.657	18.342	2;3	1.4712E-23	15029	160511_QHF_FH_JSI10i_3	180.03	166.03			0.94492	0.59456	28.568	15	7	Linear	0.92218	0.7576	14.49	4	1	Median	0.9416	1.1399	22.288	7	4	Median	0.94492	0.87535	35.776	3	2	Plateau	0.82195	0.82686	NaN	1	0	Median	1443800000	785610000	658170000	825760000	412110000	413650000	461600000	291180000	170420000	104200000	52494000	51710000	52218000	29832000	22386000	20096	1027	19026	123744;123745;123746;123747;123748;123749;123750;123751;123752;123753;123754;123755;123756;123757;123758;123759;123760;123761;123762;123763	167702;167703;167704;167705;167706;167707;167708;167709;167710;167711;167712;167713;167714;167715;167716;167717;167718;167719;167720;167721;167722;167723;167724;167725;167726	167706			25	
GMQLMHANAQR	0	Oxidation (M)	1271.5863	0.58630916	1027	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			13							6	7			14.264	13.386	2;3	3.405E-05	15012	160511_QHF_FH_JSI10i_3	84.738	78.302			1.0226	0.98818	29.121	9	4	Median	1.1139	0.91704	37.084	5	2	Plateau	0.82431	0.97251	13.466	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	414850000	203660000	211180000	231290000	110310000	120980000	183560000	93349000	90207000	0	0	0	0	0	0	20097	1027	19026	123764;123765;123766;123767;123768;123769;123770;123771;123772;123773;123774;123775;123776	167727;167728;167729;167730;167731;167732;167733;167734;167735;167736;167737;167738;167739;167740	167728		626;627	13	
GMQLMHANAQR	0	2 Oxidation (M)	1287.5812	0.58122378	1027	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	yes	yes	0	0	2	0	By MS/MS	By MS/MS			3	0			2							1	1			5.6376	5.128	2	2.1684E-05	3135	160511_QHF_FH_JSI9i_3	124.23	115.65			0.97581	0.95306	17.059	2	0	Median	1.3355	1.0752	NaN	1	0	Median	0.71302	0.84476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76922000	39955000	36967000	57731000	27919000	29812000	19191000	12036000	7154900	0	0	0	0	0	0	20098	1027	19026	123777;123778	167741;167742	167742		626;627	1	
GMSAEYSFPIWK	1	Unmodified	1414.6591	0.65912298	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		81.933	80.614	2	2.741E-08	70728	160511_QHF_FH_JSI11i_2	115.78	97.962			0.42302	0.50477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42302	0.50477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8211100	6111700	2099400	0	0	0	8211100	6111700	2099400	0	0	0	0	0	0	20099	5645	19027	123779;123780	167743;167744;167745	167745			3	
GMSAEYSFPIWKTSHTVK	2	Acetyl (K)	2110.0194	0.019361819	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.37	69.055	3	3.2178E-23	37801	160513_QHF_FH_JSI11Kac_6	197.21	169.36			0.18309	0.17782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18309	0.17782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19214000	17209000	2005600	0	0	0	0	0	0	19214000	17209000	2005600	0	0	0	20100	5645	19028	123781	167746	167746	3515		1	
GMSDVAQEK	1	Unmodified	963.43315	0.43314579	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	6	1					1				1		1		15.865	11.702	2	0.0010634	10155	160511_QHF_FH_JSI9i_1	74.376	62.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20101	2344	19029	123782;123783	167747;167748	167748			2	
GMSIDQALAQLEFNDK	1	Unmodified	1778.8509	0.85089951	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	97.953	97.799	2	2.7892E-08	85818	160511_QHF_FH_JSI11i_2	174.73	160.05			0.88527	0.90005	20.884	4	2	Median	0.92428	0.80798	NaN	1	0	Median	0.8479	1.0026	NaN	1	1	Median	1.2207	1.2015	NaN	1	1	Median	0.7269	0.76179	NaN	1	0	Median	63813000	32525000	31289000	18806000	10331000	8475500	15810000	8399700	7410300	12159000	4545100	7614200	17038000	9249000	7788500	20102	5074	19030	123784;123785;123786;123787;123788;123789	167749;167750;167751;167752;167753;167754;167755;167756	167756			8	
GMSIDQALAQLEFNDKK	2	Unmodified	1906.9459	0.94586252	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	87.743	87.408	3	2.695E-16	75853	160511_QHF_FH_JSI12i_3	176.49	159.81			0.93936	0.89051	10.955	5	0	Median	0.89843	0.7435	NaN	1	0	Median	0.71695	0.89051	NaN	1	0	Median	0.95736	0.9333	8.3872	2	0	Median	0.93936	0.94949	NaN	1	0	Median	231310000	129270000	102040000	25621000	13391000	12231000	24352000	14734000	9617500	73765000	43289000	30476000	107580000	57857000	49719000	20103	5074	19031	123790;123791;123792;123793;123794	167757;167758;167759;167760;167761;167762	167762			5	
GMSLNLEPDNVGVVVFGNDK	1	Unmodified	2103.0307	0.030654786	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.711	7	8	3							3	5	5	5	98.395	98.248	2;3	3.1742E-43	86122	160511_QHF_FH_JSI11i_2	209.21	197.23			0.92087	0.92118	9.9276	18	3	Median	1.048	0.86961	10.018	3	1	Median	0.76765	0.90405	8.1802	5	0	Median	0.97859	0.90578	9.7857	5	2	Median	0.96536	1.0109	3.53	5	0	Median	1109000000	546140000	562840000	77809000	40505000	37304000	391160000	206620000	184540000	257390000	123090000	134300000	382630000	175920000	206710000	20104	1263	19032	123795;123796;123797;123798;123799;123800;123801;123802;123803;123804;123805;123806;123807;123808;123809;123810;123811;123812	167763;167764;167765;167766;167767;167768;167769;167770;167771;167772;167773;167774;167775;167776;167777;167778;167779;167780;167781;167782;167783;167784;167785;167786;167787;167788;167789;167790;167791;167792;167793;167794;167795;167796;167797;167798;167799;167800;167801	167792			39	
GMSLNLEPDNVGVVVFGNDK	1	Oxidation (M)	2119.0256	0.025569409	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										2	2	3	88.024	87.576	2;3	2.4427E-32	79455	160511_QHF_FH_JSI10i_1	148.72	101.01			1.1961	1.2292	13.305	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3254	1.2859	NaN	1	1	Median	1.2294	1.2482	14.313	3	2	Plateau	84810000	35605000	49204000	0	0	0	0	0	0	18262000	4987300	13274000	66548000	30618000	35930000	20105	1263	19032	123813;123814;123815;123816;123817;123818;123819	167802;167803;167804;167805;167806;167807;167808	167808		888	6	
GMSSTFSQR	0	Unmodified	999.44438	0.44437918	5681	Q9Y5U2	TSSC4	Protein TSSC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			16.703	15.641	2	0.01451	12682	160511_QHF_FH_JSI10i_3	55.37	44.497			0.82546	0.81686	16.304	2	2	Median	1.0922	0.91668	NaN	1	1	Median	0.62383	0.72792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33501000	17910000	15592000	15384000	7248600	8135600	18117000	10661000	7456100	0	0	0	0	0	0	20106	5681	19033	123820;123821	167809;167810	167809			2	
GMSVSDLADK	1	Unmodified	1021.475	0.4750106	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	38.307	37.568	2	5.5011E-12	33761	160511_QHF_FH_JSI11i_1	154.56	135.82			1.0174	1.059	70.418	5	1	Median	1.0102	0.82325	137.9	2	1	Median	0.88897	1.0512	NaN	1	0	Median	1.0943	1.059	NaN	1	0	Median	1.0174	1.0924	NaN	1	0	Median	1983400000	1115800000	867530000	553000000	274780000	278220000	499770000	325390000	174380000	529590000	296540000	233050000	400990000	219110000	181880000	20107	2780	19034	123822;123823;123824;123825;123826	167811;167812;167813;167814;167815;167816;167817;167818	167812			8	
GMTENEVEDR	0	Unmodified	1178.4874	0.4873662	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		14.128	13.944	2	8.2804E-08	11569	160511_QHF_FH_JSI10i_1	123.21	107.01			0.93159	0.99961	9.8961	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90437	1.0721	NaN	1	0	Median	0.95963	0.93205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182540000	96634000	85904000	0	0	0	94327000	52980000	41347000	88211000	43655000	44556000	0	0	0	20108	2454	19035	123827;123828	167819;167820	167820			2	
GMTLVTPLQLLLFASK	1	Oxidation (M)	1746.9954	0.9953789	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.82	6.56		1	7						9	6	5	3	3	100.82	96.55	2;3	1.6386E-51	85317	160511_QHF_FH_JSI10i_3	213.06	201.19			0.85231	0.81706	26.875	15	9	Median	0.99193	0.79546	21.693	5	3	Median	0.56117	0.6522	39.587	4	1	Median	1.0094	0.96772	11.131	3	3	Median	0.85255	0.90333	6.2842	3	2	Plateau	5458500000	3152600000	2305900000	1137300000	680760000	456530000	1655900000	1105200000	550760000	1310700000	609650000	701100000	1354500000	757030000	597480000	20109	2265	19036	123829;123830;123831;123832;123833;123834;123835;123836;123837;123838;123839;123840;123841;123842;123843;123844;123845	167821;167822;167823;167824;167825;167826;167827;167828;167829;167830;167831;167832;167833;167834;167835;167836;167837;167838;167839;167840;167841;167842;167843	167822		1869	23	
GMTLVTPLQLLLFASK	1	Unmodified	1731.0005	0.0004642775	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.4		4	7						6	5	5	4	3	102.48	99.815	2;3	1.1714E-85	52210	160513_QHF_FH_JSI11Kac_6	272.5	203.96			0.92639	0.8664	13.449	13	11	Median	0.98661	0.77573	3.7475	4	4	Linear	0.73026	0.87221	4.9923	4	3	Median	1.1297	1.0662	6.5468	3	2	Plateau	0.80141	0.84091	16.023	2	2	Median	21620000000	10735000000	10885000000	3324900000	1667500000	1657400000	4427800000	2549700000	1878100000	10137000000	4463600000	5673500000	3730500000	2054400000	1676100000	20110	2265	19036	123846;123847;123848;123849;123850;123851;123852;123853;123854;123855;123856;123857;123858;123859;123860;123861;123862	167844;167845;167846;167847;167848;167849;167850;167851;167852;167853;167854;167855;167856;167857;167858;167859;167860;167861;167862	167850			19	
GMTLVTPLQLLLFASKK	2	Acetyl (K)	1901.106	0.10599198	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		100.7	91.277	3	0.00010419	52407	160513_QHF_FH_JSI11Kac_6	98.796	82.854			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58314000	58314000	0	0	0	0	0	0	0	58314000	58314000	0	0	0	0	20111	2265	19037	123863;123864	167863;167864	167864	2362		2	
GMTLVTPLQLLLFASKK	2	Unmodified	1859.0954	0.095427295	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		97.904	88.492	3	5.2913E-32	50577	160513_QHF_FH_JSI11Kac_6	158.98	149.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20112	2265	19037	123865	167865	167865			1	
GMTPFMSAVSGR	0	Unmodified	1239.574	0.57401314	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				59.095	57.56	2	0.00033302	47220	160511_QHF_FH_JSI9i_3	90.108	78.261			1.4344	1.1938	NaN	1	1	Median	1.4344	1.1938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18909000	7099400	11809000	18909000	7099400	11809000	0	0	0	0	0	0	0	0	0	20113	641	19038	123866	167866	167866			1	
GMTPGEAEIHFLENAK	1	Unmodified	1742.8298	0.82977013	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	68.33	67.777	3	0.00043848	60165	160511_QHF_FH_JSI10i_2	66.436	61.635			1.2065	1.3334	44.309	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79521	0.97477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8306	1.8241	NaN	1	0	Median	192100000	74166000	117930000	0	0	0	130890000	52677000	78218000	0	0	0	61205000	21490000	39715000	20114	4719	19039	123867;123868	167867;167868	167867			2	
GMTSESDSIGLTPGEK	1	Unmodified	1607.7349	0.7348667	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.58	41.925	2	1.6439E-97	37708	160511_QHF_FH_JSI10i_1	255.54	242.96			0.69077	0.68844	14.895	4	2	Median	0.79533	0.66449	NaN	1	1	Median	0.644	0.76716	NaN	1	0	Median	0.74092	0.71325	NaN	1	0	Median	0.52024	0.54277	NaN	1	1	Median	298720000	178810000	119910000	66728000	39380000	27348000	75701000	40853000	34848000	105390000	62245000	43142000	50905000	36331000	14574000	20115	1778	19040	123869;123870;123871;123872	167869;167870;167871;167872	167871			4	
GMTVEGLK	1	Unmodified	833.43169	0.43168922	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	32.498	29.932	2	0.00064881	25165	160511_QHF_FH_JSI12i_2	101.28	59.855			0.97999	1.0182	12.512	10	3	Median	1.3473	1.1228	13.727	2	0	Median	0.97379	1.1695	14.655	3	1	Plateau	1.0293	1.0073	11.234	3	1	Median	0.91914	0.98985	1.9947	2	1	Median	1666200000	872270000	793930000	240320000	93982000	146340000	438970000	247020000	191950000	471480000	255020000	216460000	515430000	276240000	239180000	20116	878	19041	123873;123874;123875;123876;123877;123878;123879;123880;123881;123882	167873;167874;167875;167876;167877;167878;167879;167880;167881;167882;167883;167884;167885	167875			13	
GMTVEGLK	1	Oxidation (M)	849.4266	0.42660385	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				31.223	29.952	2	0.012772	26138	160511_QHF_FH_JSI9i_1	64.265	33.035			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20117	878	19041	123883	167886	167886		429	1	
GMTYDALHVFDWIK	1	Unmodified	1694.8127	0.81266351	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	16	0									3	1		1	1	91.593	82.399	3	1.231E-11	46138	160513_QHF_FH_JSI9Kac_6	105.46	89.641			0.81041	0.78011	18.607	3	0	Median	0.71333	0.61766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81041	0.78011	NaN	1	0	Median	0.85419	0.89214	NaN	1	0	Median	110510000	54136000	56373000	46443000	19634000	26809000	0	0	0	30507000	19391000	11115000	33559000	15111000	18448000	20118	3509	19042	123884;123885;123886	167887;167888;167889;167890	167888			4	
GMVAAWSQR	0	Oxidation (M)	1020.4811	0.48109903	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.487								5	8	4	2	4	3	27.797	18.922	2	0.0012612	11109	160513_QHF_FH_JSI11Kac_6	81.548	60.248			1.1291	0.95137	8.3483	5	1	Median	1.1661	1.0532	9.4726	3	0	Median	0.7844	0.91726	NaN	1	1	Median	0.94421	0.95137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14922000	7053400	7868600	8094600	3523600	4570900	4362900	2539900	1823000	2464600	989900	1474700	0	0	0	20119	1090	19043	123887;123888;123889;123890;123891;123892;123893;123894;123895;123896;123897;123898;123899	167891;167892;167893;167894;167895;167896;167897;167898;167899;167900;167901;167902	167895		738	12	
GMVFSINLGFSDLTNK	1	Unmodified	1741.8709	0.87090667	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		92.957	83.836	2	2.1214E-31	47211	160513_QHF_FH_JSI11Kac_6	205.72	167.08			0.86558	0.77855	32.305	2	2	Median	1.1521	0.97834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65032	0.61955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83072000	42203000	40869000	32855000	15048000	17807000	0	0	0	50217000	27155000	23062000	0	0	0	20120	5658	19044	123900;123901	167903;167904	167903			2	
GMVILQWGK	1	Unmodified	1030.5634	0.5633721	3690	Q8TB52	FBXO30	F-box only protein 30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	1	2	75.353	69.795	2	1.0633E-05	61564	160511_QHF_FH_JSI12i_3	105.39	71.138			0.77419	0.8079	13.718	6	2	Median	0.88024	0.75302	10.639	2	0	Median	0.68619	0.80398	19.52	3	2	Median	0.84827	0.81882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	285970000	170070000	115900000	52844000	30013000	22831000	186960000	112420000	74536000	46169000	27632000	18537000	0	0	0	20121	3690	19045	123902;123903;123904;123905;123906;123907;123908;123909	167905;167906;167907;167908;167909;167910;167911;167912;167913	167910			8	
GMVMVSPR	0	Unmodified	875.43573	0.43572874	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		29.698	29.698	2	0.0047093	25690	160511_QHF_FH_JSI11i_3	66.429	51.765			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20122	103	19046	123910	167914	167914			1	
GMVSAYPR	0	Unmodified	879.42727	0.42727255	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	22.177	21.61	2	9.1874E-05	18151	160511_QHF_FH_JSI11i_3	130.77	97.408			1.0727	1.0309	10.359	6	1	Median	1.2407	1.0556	NaN	1	0	Median	0.76313	0.91839	NaN	1	0	Median	1.0727	1.0608	7.3947	2	1	Median	1.0261	1.1037	15.825	2	0	Median	1366300000	654940000	711320000	197530000	89482000	108050000	235400000	122320000	113080000	466930000	216730000	250200000	466390000	226400000	239990000	20123	1409	19047	123911;123912;123913;123914;123915;123916;123917	167915;167916;167917;167918;167919;167920;167921;167922;167923;167924	167915			10	
GMVSAYPR	0	Oxidation (M)	895.42219	0.42218717	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	22.369	21.635	2	0.021838	17640	160511_QHF_FH_JSI12i_3	51.335	30.035			1.5549	1.4945	63.504	3	0	Plateau	1.0958	0.97202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1647	1.2365	87.633	2	0	Median	97063000	44087000	52976000	36619000	15734000	20885000	0	0	0	0	0	0	60444000	28353000	32090000	20124	1409	19047	123918;123919;123920	167925;167926	167926			2	
GMWSEGNGSHTIR	0	Unmodified	1430.6361	0.63609612	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		25.509	24.564	2;3	1.0198E-22	19904	160511_QHF_FH_JSI9i_3	145	142.76			0.99901	0.92177	13.857	7	0	Median	1.2602	1.0227	8.8117	3	0	Median	0.79612	0.90681	2.3136	2	0	Median	0.85374	0.80454	21.405	2	0	Median	NaN	NaN	NaN	0	0	Median	550520000	274950000	275570000	238030000	105770000	132270000	191570000	109380000	82193000	120920000	59804000	61113000	0	0	0	20125	3213	19048	123921;123922;123923;123924;123925;123926;123927	167927;167928;167929;167930;167931;167932;167933;167934;167935;167936	167933			9	
GMYDVGLPSRK	1	Unmodified	1221.6176	0.61759251	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	1	2	1	38.611	37.978	2;3	2.2101E-05	33204	160511_QHF_FH_JSI11i_3	76.522	69.549			0.88736	0.83179	10.02	5	0	Median	1.0285	0.8323	NaN	1	0	Median	0.70518	0.82781	NaN	1	0	Median	0.99559	0.92258	16.407	2	0	Median	0.82846	0.83179	NaN	1	0	Median	441250000	232950000	208300000	64344000	33667000	30677000	202330000	112230000	90093000	146280000	73088000	73189000	28304000	13962000	14342000	20126	2728	19049	123928;123929;123930;123931;123932;123933	167937;167938;167939;167940;167941;167942;167943;167944	167937			8	
GMYGIENEVFLSLPCILNAR	0	Unmodified	2295.1392	0.13915938	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		102.37	102.37	3	1.4064E-06	91492	160511_QHF_FH_JSI11i_3	86.8	71.871			0.87378	0.82379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87378	0.82379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59808000	26570000	33238000	0	0	0	0	0	0	59808000	26570000	33238000	0	0	0	20127	864	19050	123934;123935	167945;167946	167945			2	
GNAAGSSQTGDALGK	1	Unmodified	1332.627	0.62697123	4263	Q99081	TCF12	Transcription factor 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.851	11.534	2	5.3333E-17	8982	160511_QHF_FH_JSI9i_1	127.17	93.299			0.59915	0.6134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59915	0.6134	NaN	1	0	Median	42953000	30188000	12765000	0	0	0	11658000	11658000	0	0	0	0	31295000	18530000	12765000	20128	4263	19051	123936;123937;123938	167947;167948;167949	167949			3	
GNAAWQEQLK	1	Unmodified	1143.5673	0.5672715	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.44	4	5	2				1			3	2	2	5	33.634	31.994	2	1.9449E-25	27699	160511_QHF_FH_JSI9i_2	186.76	151.96			1.026	1.1162	27.164	11	7	Median	1.1257	0.94816	14.003	2	1	Median	0.97809	1.19	3.3987	2	1	Median	1.2373	1.2306	13.806	2	1	Median	0.99176	1.0621	38.807	5	4	Median	2555700000	1279800000	1276000000	154450000	77536000	76913000	622120000	330140000	291970000	668930000	321630000	347300000	1110200000	550460000	559770000	20129	878	19052	123939;123940;123941;123942;123943;123944;123945;123946;123947;123948;123949;123950	167950;167951;167952;167953;167954;167955;167956;167957;167958;167959;167960;167961;167962;167963;167964;167965	167959			16	
GNAAWQEQLKQK	2	Acetyl (K)	1441.7314	0.73137672	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							3					2	1	51.655	41.008	2;3	3.1994E-05	23980	160513_QHF_FH_JSI11Kac_4	98.943	85.987			0.32285	0.3037	19.255	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32285	0.3037	19.255	2	1	Median	NaN	NaN	NaN	0	0	Median	4668600	4046600	621930	0	0	0	0	0	0	3576700	2954800	621930	1091800	1091800	0	20130	878	19053	123951;123952;123953	167966;167967;167968;167969	167966	589		4	
GNAESGDSVK	1	Unmodified	962.4305	0.43050325	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	0.495					4	3				1	2	2	2	4.7885	-2.4608	2	0.0013044	1570	160513_QHF_FH_JSI11Kac_3	82.287	46.992			1.0024	1.0108	19.531	4	0	Median	NaN	NaN	NaN	0	0	Median	0.63134	0.70784	NaN	1	0	Median	1.0752	1.0111	8.1052	2	0	Median	0.99624	1.0701	NaN	1	0	Median	7114900	3264700	3850200	0	0	0	1250500	808140	442320	4243900	1733900	2510000	1620500	722680	897870	20131	644	19054	123954;123955;123956;123957;123958;123959;123960	167970;167971;167972;167973;167974	167970			5	
GNAGGIQPDLLISLTAPK	1	Unmodified	1763.9781	0.97814893	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	2	3	3	94.931	94.614	2;3	3.5293E-17	86060	160511_QHF_FH_JSI12i_1	168.5	154.83			1.0281	0.94018	10.5	11	3	Median	1.1075	0.90553	2.89	3	2	Median	0.79039	0.92608	13.507	2	1	Median	1.0295	0.99752	17.691	3	0	Median	0.9239	0.96266	8.6189	3	0	Median	606150000	309530000	296630000	81610000	40105000	41506000	183400000	100370000	83031000	162680000	78398000	84287000	178460000	90650000	87805000	20132	3623	19055	123961;123962;123963;123964;123965;123966;123967;123968;123969;123970;123971	167975;167976;167977;167978;167979;167980;167981;167982;167983;167984;167985;167986;167987;167988	167980			13	
GNAGGIQPDLLISLTAPKK	2	Unmodified	1892.0731	0.073111949	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	83.178	82.693	3	2.7225E-14	71869	160511_QHF_FH_JSI12i_3	143.39	137.94			0.99241	1.0076	9.9054	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.70928	0.83129	NaN	1	1	Median	0.97179	0.9198	NaN	1	1	Median	0.99241	1.0134	NaN	1	1	Median	613560000	302320000	311250000	0	0	0	27994000	16655000	11338000	164360000	74105000	90256000	421210000	211560000	209650000	20133	3623	19056	123972;123973;123974	167989;167990;167991;167992	167992			4	
GNAGQSNYGFANSAMER	0	Unmodified	1772.7536	0.75364508	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.83	7	6	4				4			4	5	6	6	39.6	37.408	2;3	5.1591E-209	33424	160511_QHF_FH_JSI10i_1	328.29	315.79			0.95813	0.97943	13.945	20	0	Median	1.4371	1.1975	10.779	4	0	Median	0.97514	1.192	6.9446	5	0	Median	0.93989	0.93332	4.1027	6	0	Median	0.90238	0.94353	3.1563	5	0	Median	4708800000	2325800000	2383100000	741060000	308510000	432550000	1348900000	669860000	679050000	1561500000	796180000	765280000	1057400000	551190000	506210000	20134	1650	19057	123975;123976;123977;123978;123979;123980;123981;123982;123983;123984;123985;123986;123987;123988;123989;123990;123991;123992;123993;123994;123995	167993;167994;167995;167996;167997;167998;167999;168000;168001;168002;168003;168004;168005;168006;168007;168008;168009;168010;168011;168012;168013;168014;168015;168016;168017;168018;168019;168020;168021;168022;168023;168024;168025;168026;168027	168007			33	
GNAGQSNYGFANSAMER	0	Oxidation (M)	1788.7486	0.7485597	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			2	2	3	2	30.778	27.571	2	1.82E-80	23236	160511_QHF_FH_JSI12i_1	241.42	232.41			0.95336	1.0365	14.197	7	2	Median	1.4871	1.2977	7.1861	2	1	Median	0.84918	1.0101	8.6995	2	1	Median	0.99109	0.96428	NaN	1	0	Median	0.93996	0.98994	6.5024	2	0	Median	290640000	134710000	155930000	51187000	20048000	31138000	148110000	75042000	73071000	2867100	1348500	1518600	88470000	38272000	50198000	20135	1650	19057	123996;123997;123998;123999;124000;124001;124002;124003;124004	168028;168029;168030;168031;168032;168033;168034;168035;168036;168037;168038;168039;168040	168029		1317	13	
GNAHKIMEK	2	Acetyl (K)	1068.5386	0.53861391	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								3	9	2	3	4	3	15.699	7.5146	2;3	0.00067764	5874	160513_QHF_FH_JSI11Kac_6	77.379	62.228			0.74259	0.7898	59.311	10	1	Median	0.98261	0.81237	NaN	1	0	Median	0.87305	1.0307	6.5449	3	0	Plateau	0.38169	0.37708	18.681	3	0	Median	0.79866	0.86597	81.887	3	1	Plateau	90430000	50769000	39661000	6336400	2570900	3765400	27812000	13868000	13944000	39592000	24658000	14934000	16690000	9672200	7017800	20136	1865	19058	124005;124006;124007;124008;124009;124010;124011;124012;124013;124014;124015;124016	168041;168042;168043;168044;168045;168046;168047;168048;168049;168050;168051;168052;168053	168042	1878		12	
GNAHKIMEK	2	Acetyl (K);Oxidation (M)	1084.5335	0.53352853	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15.3	0.471								2	1			2	1	7.8697	-1.5324	2;3	0.017018	2859	160513_QHF_FH_JSI11Kac_5	42.243	29.206			0.44451	0.45558	308.48	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.053879	0.051433	NaN	1	1	Median	3.6673	4.0354	NaN	1	1	Median	10549000	8269400	2279200	0	0	0	0	0	0	7877600	7752900	124760	2671000	516500	2154500	20137	1865	19058	124017;124018;124019	168054;168055;168056	168055	1878	1547	3	
GNAMVEEGHFAAEDVK	1	Unmodified	1702.7621	0.7620845	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	40.536	39.631	2;3	8.5969E-11	33919	160511_QHF_FH_JSI11i_2	152.99	137.79			0.99445	1.0991	19.715	9	6	Median	1.1112	0.95929	22.711	2	2	Median	0.92407	1.1299	7.8238	2	1	Median	1.4284	1.4323	24.796	3	2	Plateau	0.96005	1.0524	1.1936	2	1	Median	520960000	260190000	260770000	60675000	28927000	31748000	83179000	49054000	34125000	284300000	135310000	148980000	92814000	46897000	45916000	20138	2470	19059	124020;124021;124022;124023;124024;124025;124026;124027;124028	168057;168058;168059;168060;168061;168062;168063;168064;168065;168066;168067;168068	168062			12	
GNANDIGMDYDYALLELK	1	Unmodified	2013.9354	0.93535742	643	O95084	PRSS23	Serine protease 23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	95.993	95.85	2;3	1.131E-08	86711	160511_QHF_FH_JSI10i_1	166.09	154.55			0.97462	1.0199	15.146	4	2	Median	NaN	NaN	NaN	0	0	Median	0.86556	0.96297	NaN	1	0	Median	1.3024	1.2652	NaN	1	0	Median	0.9731	0.98243	13.42	2	2	Median	63333000	37324000	26009000	0	0	0	29629000	21495000	8134400	13399000	6145400	7253900	20304000	9684000	10620000	20139	643	19060	124029;124030;124031;124032;124033	168069;168070;168071;168072;168073;168074;168075;168076;168077	168075			9	
GNAPEGLPQLMEVVR	0	Unmodified	1608.8294	0.8293762	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				85.252	84.418	2	0.0052499	75110	160511_QHF_FH_JSI9i_1	53.528	42.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20140	21	19061	124034;124035	168078;168079	168078			2	
GNDIIAAAK	1	Unmodified	871.47633	0.47633123	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				1	3	3	3	25.918	22.23	1;2	6.3471E-05	19615	160511_QHF_FH_JSI12i_1	96.948	67.799			0.96333	0.99178	15.567	10	0	Median	1.2833	1.0582	NaN	1	0	Median	0.72314	0.84754	16.19	3	0	Median	1.0174	0.98921	24.678	3	0	Median	0.87099	0.89804	7.5677	3	0	Plateau	1680400000	926220000	754150000	369350000	168330000	201020000	375860000	216230000	159630000	393680000	217250000	176430000	541480000	324410000	217060000	20141	1139	19062	124036;124037;124038;124039;124040;124041;124042;124043;124044;124045	168080;168081;168082;168083;168084;168085;168086;168087;168088;168089;168090;168091;168092;168093;168094	168083			14	
GNDISSGTVLSDYVGSGPPK	1	Unmodified	1948.9378	0.93780026	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.1	8		5			5				3	7	3	5	69.697	66.347	2;3	3.3163E-297	60573	160511_QHF_FH_JSI12i_1	366.92	352.05			0.98677	0.94349	21.682	15	3	Median	1.1366	0.9338	19.273	3	0	Median	0.7959	0.93361	26.98	5	1	Median	0.98677	0.9694	27.472	3	1	Median	1.0326	1.1087	4.7129	4	1	Median	11360000000	5931100000	5428900000	3171700000	1505200000	1666500000	2912000000	1710400000	1201600000	2609800000	1409200000	1200600000	2666600000	1306400000	1360200000	20142	1343	19063	124046;124047;124048;124049;124050;124051;124052;124053;124054;124055;124056;124057;124058;124059;124060;124061;124062;124063	168095;168096;168097;168098;168099;168100;168101;168102;168103;168104;168105;168106;168107;168108;168109;168110;168111;168112;168113;168114;168115;168116;168117;168118;168119;168120;168121;168122;168123;168124;168125;168126;168127;168128;168129;168130	168106			36	
GNDMQVGTYIEK	1	Unmodified	1353.6235	0.62346575	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.473	43.807	2	2.9937E-08	39806	160511_QHF_FH_JSI12i_1	140.09	123.95			0.99194	0.96748	10.288	4	0	Median	1.1074	0.90534	NaN	1	0	Median	0.88561	1.0266	NaN	1	0	Median	1.1485	1.1221	NaN	1	0	Median	0.8885	0.91172	NaN	1	0	Median	614720000	295170000	319560000	104510000	46004000	58506000	151180000	78513000	72668000	171420000	78763000	92657000	187610000	91886000	95727000	20143	1306	19064	124064;124065;124066;124067	168131;168132;168133;168134;168135;168136;168137	168133			7	
GNDMQVGTYIEK	1	Oxidation (M)	1369.6184	0.61838038	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				45.056	43.834	2	0.00043366	38970	160511_QHF_FH_JSI9i_1	80.979	63.954			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20144	1306	19064	124068	168138	168138		961	1	
GNDPNVNIVPK	1	Unmodified	1165.6091	0.60913632	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		44.913	35.611	2	0.049078	20090	160513_QHF_FH_JSI11Kac_3	48.423	41.203			0.96573	0.93089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96573	0.93089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1682600	745720	936860	0	0	0	0	0	0	1682600	745720	936860	0	0	0	20145	5646	19065	124069	168139	168139			1	
GNDPNVSLVPK	1	Unmodified	1138.5982	0.59823728	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	1					1					1	1		42.223	37.344	2	0.00075852	33196	160511_QHF_FH_JSI10i_1	81.017	66.81			1.1915	1.2878	3.2612	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.3179	NaN	1	1	Median	1.301	1.2585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81219000	42522000	38696000	0	0	0	79686000	41715000	37970000	1532900	807080	725800	0	0	0	20146	1628	19066	124070;124071	168140;168141	168141			2	
GNDQVRFELSCYSLAPQIK	1	Unmodified	2224.0947	0.094652027	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	77.78	77.056	3	2.8578E-33	66943	160511_QHF_FH_JSI12i_3	194.92	185.51			1.0411	1.1325	13.579	6	1	Median	1.0884	0.95102	NaN	1	0	Median	1.0509	1.2532	6.7584	2	1	Median	0.99575	0.94106	NaN	1	0	Median	1.0739	1.1351	7.8808	2	0	Median	873250000	432440000	440810000	42073000	24450000	17623000	87256000	42199000	45057000	281970000	152390000	129580000	461950000	213400000	248550000	20147	779	19067	124072;124073;124074;124075;124076;124077	168142;168143;168144;168145;168146;168147	168147			6	
GNDTFVTLDEILR	0	Unmodified	1491.7569	0.75692277	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.731	95.384	2	6.5305E-05	82051	160511_QHF_FH_JSI12i_2	105.17	91.013			0.91239	0.92858	17.087	3	1	Plateau	0.91239	0.78611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81207	0.80627	NaN	1	0	Median	0.93451	1.0694	NaN	1	0	Median	85240000	47037000	38202000	19833000	12554000	7278700	0	0	0	29976000	16154000	13821000	35431000	18329000	17102000	20148	1695	19068	124078;124079;124080;124081	168148;168149;168150;168151;168152	168149			5	
GNDTPLALESTNTEK	1	Unmodified	1588.758	0.75804498	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	1	3	3	42.609	39.863	2;3	3.2241E-09	35143	160511_QHF_FH_JSI9i_1	185.95	162.72			1.1362	1.1929	15.115	8	3	Median	1.6075	1.3223	NaN	1	1	Median	1.168	1.3877	NaN	1	0	Median	1.1189	1.1037	12.073	3	1	Median	1.0926	1.1483	17.703	3	1	Median	592890000	271350000	321540000	122080000	38950000	83130000	45127000	20983000	24144000	229170000	119770000	109400000	196520000	91646000	104870000	20149	3290	19069	124082;124083;124084;124085;124086;124087;124088;124089	168153;168154;168155;168156;168157;168158;168159;168160	168158			7	
GNDVAFHFNPR	0	Unmodified	1272.6	0.59996862	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	6.53		8	8					1	9	7	6	7	6	43.059	39.1	2;3	7.4622E-48	32923	160511_QHF_FH_JSI12i_3	218.6	193.77			0.96586	0.97988	11.268	25	1	Median	1.1248	0.96944	16.563	7	1	Median	0.82985	0.97906	13.175	6	0	Median	1.0368	1.0026	5.8184	6	0	Median	0.92583	0.95903	5.1136	6	0	Median	11424000000	5740000000	5683800000	834590000	387370000	447220000	1335800000	708060000	627780000	4165500000	1984400000	2181100000	5087900000	2660200000	2427700000	20150	1130	19070	124090;124091;124092;124093;124094;124095;124096;124097;124098;124099;124100;124101;124102;124103;124104;124105;124106;124107;124108;124109;124110;124111;124112;124113;124114;124115	168161;168162;168163;168164;168165;168166;168167;168168;168169;168170;168171;168172;168173;168174;168175;168176;168177;168178;168179;168180;168181;168182;168183;168184;168185;168186;168187;168188;168189;168190;168191;168192;168193;168194;168195;168196;168197;168198;168199;168200;168201;168202;168203;168204;168205;168206;168207;168208;168209;168210;168211;168212;168213	168204			53	
GNDVLVIECNLR	0	Unmodified	1400.7082	0.70819844	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.03	1	6					1			2	1	2	3	64.72	61.997	2	4.4351E-05	54732	160511_QHF_FH_JSI10i_2	99.522	72.408			1.1846	1.2079	26.806	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82932	0.82895	7.795	2	2	Median	1.1921	1.2562	9.2012	3	1	Plateau	356260000	164140000	192110000	0	0	0	0	0	0	153480000	75766000	77717000	202770000	88378000	114400000	20151	1372	19071	124116;124117;124118;124119;124120;124121;124122;124123	168214;168215;168216;168217;168218;168219;168220;168221;168222	168222			8	
GNECFQK	1	Unmodified	881.37015	0.3701516	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	8.3337	8.0959	2	0.0063524	5743	160511_QHF_FH_JSI11i_1	79.469	53.91			1.2446	1.3006	8.9844	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2446	1.4628	NaN	1	1	Median	1.2626	1.2261	NaN	1	1	Median	1.2143	1.3006	NaN	1	1	Median	1144700000	512390000	632320000	0	0	0	395730000	175940000	219790000	376670000	173410000	203260000	372310000	163040000	209270000	20152	1386	19072	124124;124125;124126;124127;124128	168223;168224;168225;168226;168227	168224			5	
GNECFQKGDYPQAMK	2	Acetyl (K);Oxidation (M)	1829.7713	0.77126898	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	1	1			By MS/MS		13	0						2						2		45.368	36.065	2;3	0.0036765	20284	160513_QHF_FH_JSI11Kac_3	72.958	60.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4897000	4897000	0	0	0	0	0	0	0	4897000	4897000	0	0	0	0	20153	1386	19073	124129;124130	168228;168229;168230	168230	1335;1336	1036	3	
GNEEAQIFRPLK	1	Unmodified	1400.7412	0.74121312	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	4	3	2	45.266	44.526	2;3	2.0173E-23	37583	160511_QHF_FH_JSI10i_3	147.26	141.35			0.98743	0.94677	20.519	11	1	Median	1.4122	1.2466	1.2305	2	0	Median	0.78459	0.89199	26.848	4	1	Median	0.87662	0.84815	21.913	3	0	Plateau	0.99382	1.045	18.141	2	0	Median	1718600000	827550000	891040000	160750000	70426000	90319000	369930000	207490000	162440000	865120000	404170000	460950000	322780000	145450000	177330000	20154	2609	19074	124131;124132;124133;124134;124135;124136;124137;124138;124139;124140;124141	168231;168232;168233;168234;168235;168236;168237;168238;168239;168240;168241;168242;168243;168244;168245;168246;168247;168248;168249	168238			19	
GNEFEDYCLK	1	Unmodified	1273.5285	0.52850274	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	46.35	45.823	2	0.00080028	41358	160511_QHF_FH_JSI11i_1	83.358	78.745			0.79064	0.78114	27.012	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6886	0.64532	NaN	1	1	Median	0.9078	0.94554	NaN	1	0	Median	134520000	75047000	59470000	0	0	0	0	0	0	71026000	40639000	30387000	63491000	34409000	29083000	20155	1271	19075	124142;124143;124144	168250;168251;168252	168250			3	
GNEFVVIHNGIITNYK	1	Unmodified	1816.9472	0.94718315	608	O94808	GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			71.892	64.426	3	0.047389	35363	160513_QHF_FH_JSI10Kac_6	31.41	22.591			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20156	608	19076	124145	168253	168253			1	
GNEIEPNFSATRK	1	Unmodified	1461.7212	0.72120596	3288	Q7Z6K5	ARPIN	Arpin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		29.365	28.537	3	1.5028E-05	24585	160511_QHF_FH_JSI11i_3	106.58	75.705			1.0259	1.0763	10.857	4	1	Median	1.0759	0.90934	NaN	1	1	Median	0.96687	1.1341	5.3031	2	0	Median	1.159	1.0604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	250290000	132890000	117400000	64945000	42089000	22856000	92380000	44544000	47836000	92965000	46259000	46706000	0	0	0	20157	3288	19077	124146;124147;124148;124149	168254;168255;168256	168254			3	
GNEILELK	1	Unmodified	914.5073	0.50729701	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	1	1	3	46.303	43.658	2	2.3214E-06	39753	160511_QHF_FH_JSI12i_1	144.09	88.413			0.98486	1.0057	4.9613	5	0	Median	1.1389	0.93013	NaN	1	0	Median	0.89012	1.0515	NaN	1	0	Median	1.0678	1.0482	NaN	1	0	Median	0.95195	1.0022	0.49156	2	0	Median	622210000	295880000	326330000	103520000	45221000	58303000	143880000	75715000	68170000	184470000	83558000	100910000	190330000	91382000	98952000	20158	1016	19078	124150;124151;124152;124153;124154;124155	168257;168258;168259;168260;168261;168262;168263;168264;168265;168266	168260			10	
GNEIVLSAGSTPR	0	Unmodified	1299.6783	0.67827852	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.33	5.44	2	2				2				3		2	1	40.676	37.805	2	6.5393E-05	33236	160511_QHF_FH_JSI9i_1	105.13	83.047			1.0528	0.98227	25.296	4	2	Median	1.0114	0.86183	27.302	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3365	1.3028	NaN	1	1	Median	0.88079	0.92299	NaN	1	0	Median	528150000	225120000	303030000	184870000	79997000	104870000	0	0	0	341850000	144390000	197460000	1429900	728240	701620	20159	2517	19079	124156;124157;124158;124159;124160;124161	168267;168268;168269;168270;168271;168272;168273	168269			7	
GNEMSEVLR	0	Unmodified	1033.4862	0.48624399	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.91	32.57	2	0.0046791	29121	160511_QHF_FH_JSI10i_1	66.299	42.87			4.8841	5.7677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.8841	5.7677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	192340000	21852000	170490000	0	0	0	192340000	21852000	170490000	0	0	0	0	0	0	20160	1479	19080	124162	168274	168274			1	
GNENANGAPAITLLIR	0	Unmodified	1622.874	0.87401821	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			77.694	76.963	2	0.00012165	68428	160511_QHF_FH_JSI10i_2	115.12	101.46			0.78463	0.95173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78463	0.95173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20900000	13770000	7129600	0	0	0	20900000	13770000	7129600	0	0	0	0	0	0	20161	5658	19081	124163	168275	168275			1	
GNEQHAFTR	0	Unmodified	1058.4894	0.48935553	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		7.2293	6.7781	2	7.0371E-05	4723	160511_QHF_FH_JSI10i_2	96.342	83.305			1.4639	1.8094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4639	1.8094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29319000	13441000	15878000	0	0	0	29319000	13441000	15878000	0	0	0	0	0	0	20162	2344	19082	124164;124165;124166	168276;168277;168278	168278			3	
GNEYQPSNIK	1	Unmodified	1148.5462	0.54620171	4347	Q9BQ48	MRPL34	39S ribosomal protein L34, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.44	6	1				3				2	1	2	5	18.584	16.48	2;3	1.0873E-06	15071	160511_QHF_FH_JSI12i_1	126.31	87.165			0.98452	1.1069	27.327	9	6	Median	1.5472	1.2672	63.537	2	2	Median	0.90681	1.1069	NaN	1	0	Median	1.047	1.0048	17.07	2	1	Median	1.0578	1.0836	19.135	4	3	Median	710290000	365800000	344490000	103380000	47026000	56351000	66074000	35772000	30302000	78482000	38499000	39983000	462360000	244510000	217850000	20163	4347	19083	124167;124168;124169;124170;124171;124172;124173;124174;124175;124176	168279;168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290	168282			12	
GNFADKEPTK	2	Acetyl (K)	1147.551	0.55095274	3587	Q8NB91	FANCB	Fanconi anemia group B protein	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		33.121	24.34	2	0.049799	14640	160513_QHF_FH_JSI11Kac_3	50.108	10.259			0.26088	0.2696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26088	0.2696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1013200	788950	224230	0	0	0	0	0	0	1013200	788950	224230	0	0	0	20164	3587	19084	124177	168291	168291			1	
GNFGGSFAGSFGGAGGHAPGVAR	0	Unmodified	2033.9456	0.94562002	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	3	2	2	59.995	54.974	2;3	1.9815E-74	30228	160513_QHF_FH_JSI10Kac_6	211.06	205.35			0.95486	0.94491	11.336	8	0	Median	1.1543	0.95864	22.504	2	0	Median	0.77635	0.90136	1.9019	2	0	Median	1.1223	1.0617	0.93281	2	0	Median	0.87144	0.92066	8.4465	2	0	Median	694340000	351670000	342670000	247500000	116610000	130890000	306990000	171090000	135900000	91109000	40522000	50587000	48739000	23450000	25289000	20165	1765	19085	124178;124179;124180;124181;124182;124183;124184;124185;124186	168292;168293;168294;168295;168296;168297;168298;168299;168300;168301;168302;168303;168304;168305	168305			14	
GNFILSAGVDK	1	Unmodified	1119.5924	0.59242362	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	54.973	54.09	2	0.021649	46459	160511_QHF_FH_JSI12i_2	71.03	44.141			1.0467	1.1763	80.709	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7814	2.0815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61502	0.66477	NaN	1	0	Median	68498000	42599000	25899000	0	0	0	36020000	22501000	13519000	0	0	0	32478000	20098000	12380000	20166	4568	19086	124187;124188	168306;168307	168306			0	
GNFKLVR	1	Acetyl (K)	874.50249	0.5024864	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.42	36.745	2	0.0047127	20054	160513_QHF_FH_JSI11Kac_6	101.69	52.93			0.074857	0.074141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074857	0.074141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7936000	7616400	319630	0	0	0	0	0	0	7936000	7616400	319630	0	0	0	20167	1508	19087	124189	168308	168308	1536		1	
GNFLEIK	1	Unmodified	819.44905	0.44905385	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	2	2									2	2		47.026	46.448	2	0.0089652	39838	160511_QHF_FH_JSI11i_2	81.191	41.087			0.73973	0.81225	22.972	4	1	Median	NaN	NaN	NaN	0	0	Median	0.61405	0.73223	30.132	2	1	Median	0.84802	0.84753	21.479	2	0	Median	NaN	NaN	NaN	0	0	Median	348640000	220500000	128140000	0	0	0	118810000	74929000	43876000	229840000	145570000	84265000	0	0	0	20168	2578	19088	124190;124191;124192;124193	168309;168310;168311;168312;168313;168314;168315	168313			7	
GNFNVAHGLAWSYYIGYLR	0	Unmodified	2200.0854	0.08540797	3365	Q86WV6	TMEM173	Stimulator of interferon genes protein	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	89.517	80.074	3	1.059E-07	43022	160513_QHF_FH_JSI12Kac_6	95.666	80.35			0.91718	0.99619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91718	0.99619	NaN	1	0	Median	60994000	31708000	29286000	0	0	0	0	0	0	0	0	0	60994000	31708000	29286000	20169	3365	19089	124194	168316	168316			1	
GNFNYIEFTR	0	Unmodified	1259.5935	0.59348625	223;1151	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.32	6.7	3	4	3				1	4	4	3	6	5	5	67.038	62.019	2	5.9768E-44	32350	160513_QHF_FH_JSI12Kac_6	206.43	177.27			1.0055	1.0637	22.546	19	4	Median	1.3809	1.1877	1.9612	3	0	Median	0.81256	0.96985	18.407	6	3	Median	1.0374	1.0637	16.704	5	0	Median	0.84952	0.89742	32.914	5	1	Median	2887500000	1436600000	1450900000	353810000	144170000	209640000	741860000	396740000	345110000	1120700000	537890000	582850000	671060000	357810000	313250000	20170	223;1151	19090	124195;124196;124197;124198;124199;124200;124201;124202;124203;124204;124205;124206;124207;124208;124209;124210;124211;124212;124213	168317;168318;168319;168320;168321;168322;168323;168324;168325;168326;168327;168328;168329;168330;168331;168332;168333;168334;168335;168336;168337;168338;168339;168340;168341;168342;168343;168344;168345;168346;168347;168348;168349	168347			33	
GNFQTIGLSAAAR	0	Unmodified	1304.6837	0.68369824	831	P05187;P10696	ALPP;ALPPL2	Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	yes	no	0	0	0	0			By MS/MS		3	0			1									1		50.276	50.276	2	0.0034426	44492	160511_QHF_FH_JSI11i_3	74.76	52.612			0.61506	0.57478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61506	0.57478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31342000	13477000	17865000	0	0	0	0	0	0	31342000	13477000	17865000	0	0	0	20171	831	19091	124214	168350	168350			1	
GNFSSFMQK	1	Unmodified	1044.4699	0.46986564	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		2	4						2	3	2	2	1	47.251	44.205	2	1.754E-06	38766	160511_QHF_FH_JSI11i_3	130.27	19.264			1.113	1.0514	23.257	8	2	Median	1.2846	1.0269	30.362	3	1	Plateau	0.9081	1.0864	10.426	2	0	Median	1.0014	0.95817	29.917	2	0	Median	1.0196	1.0237	NaN	1	1	Median	2286100000	1108300000	1177800000	359350000	148940000	210400000	539820000	280400000	259420000	576770000	270780000	305990000	810180000	408170000	402010000	20172	2242	19092	124215;124216;124217;124218;124219;124220;124221;124222	168351;168352;168353;168354;168355;168356;168357;168358;168359;168360;168361;168362;168363;168364	168352			14	
GNFSSFMQK	1	Oxidation (M)	1060.4648	0.46478027	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	1	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	26.164	25.271	2	0.0025236	20937	160511_QHF_FH_JSI12i_3	68.016	61.786			0.96868	0.97417	7.9859	3	0	Median	1.2653	1.0256	NaN	1	0	Median	0.78253	0.8769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96868	0.97417	NaN	1	0	Median	107530000	58448000	49084000	25884000	9428900	16455000	21419000	13600000	7818800	0	0	0	60230000	35419000	24811000	20173	2242	19092	124223;124224;124225	168365;168366;168367	168367		1856	3	
GNFYEASDWFK	1	Unmodified	1362.5881	0.58806652	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			76.442	75.686	2	0.0092941	66824	160511_QHF_FH_JSI9i_2	70.808	53.97			1.095	1.1359	15.944	2	0	Median	1.1535	1.0148	NaN	1	0	Median	1.0394	1.2715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63961000	27854000	36108000	31203000	13051000	18152000	32758000	14803000	17955000	0	0	0	0	0	0	20174	3115	19093	124226;124227	168368;168369	168368			0	
GNGGVYGWDLK	1	Unmodified	1164.5564	0.55637247	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	52.763	52.262	2	1.3713E-05	47117	160511_QHF_FH_JSI10i_1	106.4	96.169			1.077	1.1651	7.7628	4	0	Median	NaN	NaN	NaN	0	0	Median	0.99117	1.1726	NaN	1	0	Median	1.2068	1.1809	13.347	2	0	Median	1.0802	1.1577	NaN	1	0	Median	243600000	130640000	112950000	0	0	0	82958000	49492000	33466000	120540000	61432000	59104000	40102000	19718000	20384000	20175	445	19094	124228;124229;124230;124231	168370;168371;168372;168373;168374;168375	168374			6	
GNGPHDNGIIVSTR	0	Unmodified	1435.7168	0.71678929	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.362	20.369	2	1.0167E-05	17137	160511_QHF_FH_JSI11i_3	126.1	109.53			0.92107	0.89744	8.0213	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0246	0.94981	NaN	1	0	Median	0.82799	0.84796	NaN	1	0	Median	30912000	13734000	17178000	0	0	0	0	0	0	15281000	7861300	7420100	15631000	5873100	9757700	20176	236	19095	124232;124233	168376;168377;168378	168376			3	
GNGTNVIK	1	Unmodified	801.43447	0.43446642	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.8423	8.4794	2	0.0018212	6014	160511_QHF_FH_JSI9i_1	84.743	56.636			1.076	1.1193	10.061	4	0	Median	1.3368	1.0916	NaN	1	0	Median	0.98819	1.1477	NaN	1	0	Median	1.1715	1.1547	NaN	1	0	Median	0.88901	0.93079	NaN	1	0	Median	695430000	335110000	360320000	125010000	52936000	72073000	198050000	95318000	102730000	225510000	112570000	112930000	146860000	74282000	72577000	20177	3071	19096	124234;124235;124236;124237	168379;168380;168381;168382;168383;168384	168383			6	
GNGTQPVLSGTGEETVR	0	Unmodified	1700.8329	0.83294126	5652	Q9Y597	KCTD3	BTB/POZ domain-containing protein KCTD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	33.166	32.443	2	5.8836E-11	28929	160511_QHF_FH_JSI10i_1	107.65	93.488			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20178	5652	19097	124238;124239;124240	168385;168386;168387	168386			3	
GNGTSMISLIIPPK	1	Unmodified	1426.7854	0.78538612	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.73		13	7					4		6	6	7	5	85.73	83.689	2;3	1.5065E-65	75858	160511_QHF_FH_JSI11i_3	204.49	182.4			0.90522	0.90539	12.859	13	7	Median	0.97989	0.83202	3.7484	2	1	Median	0.68163	0.84317	7.9534	3	1	Plateau	0.92597	0.90569	16.41	5	2	Median	0.85463	0.91316	14.567	3	3	Median	349450000	183880000	165570000	47362000	25748000	21614000	58786000	31753000	27033000	163230000	83850000	79380000	80075000	42529000	37546000	20179	2010	19098	124241;124242;124243;124244;124245;124246;124247;124248;124249;124250;124251;124252;124253;124254;124255;124256;124257;124258;124259;124260;124261;124262;124263;124264	168388;168389;168390;168391;168392;168393;168394;168395;168396;168397;168398;168399;168400;168401;168402;168403;168404;168405;168406;168407;168408;168409;168410;168411;168412;168413;168414;168415;168416	168392			29	
GNHECASINR	0	Unmodified	1156.5044	0.50435367	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.58		7	4					2		2	2	5	4	5.74	4.0968	2;3	2.4731E-25	3362	160511_QHF_FH_JSI10i_2	214.05	207.16			0.8728	0.88659	27.066	13	0	Median	1.2043	1.0235	24.532	2	0	Median	0.72558	0.8938	1.1451	2	0	Median	0.76993	0.76267	4.9183	5	0	Median	1.2692	1.1966	14.466	4	0	Linear	1884300000	953190000	931100000	191940000	90761000	101180000	354920000	206410000	148510000	692150000	365860000	326290000	645280000	290160000	355120000	20180	1981;1461;1980	19099	124265;124266;124267;124268;124269;124270;124271;124272;124273;124274;124275;124276;124277	168417;168418;168419;168420;168421;168422;168423;168424;168425;168426	168424			9	
GNHETDNMNQIYGFEGEVK	1	Unmodified	2180.9433	0.94329634	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		55.897	55.443	2;3	3.8073E-80	47853	160511_QHF_FH_JSI11i_2	203.37	189.46			0.99525	1.0961	9.6815	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98368	1.1738	NaN	1	0	Median	1.007	1.0236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	100490000	43988000	56505000	0	0	0	77049000	33472000	43577000	23444000	10516000	12928000	0	0	0	20181	1793	19100	124278;124279;124280	168427;168428;168429	168429			2	
GNHMDFGQLYQFLNTK	1	Unmodified	1911.8938	0.89376737	1887	P57060	RWDD2B	RWD domain-containing protein 2B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	92.523	92.501	3	1.6177E-05	80193	160511_QHF_FH_JSI12i_3	90.561	86.781			0.85798	0.85502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85798	0.85502	NaN	1	0	Median	29929000	14913000	15017000	0	0	0	0	0	0	0	0	0	29929000	14913000	15017000	20182	1887	19101	124281	168430;168431	168431			2	
GNIAQMYHAPGK	1	Unmodified	1285.6237	0.62374052	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	28.813	28.795	2;3	5.547E-07	24131	160511_QHF_FH_JSI12i_3	107.21	94.979			1.224	1.169	11.189	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3605	1.2701	11.733	2	2	Median	1.0901	1.1153	NaN	1	0	Median	315070000	147000000	168080000	0	0	0	0	0	0	172710000	66168000	106540000	142360000	80828000	61531000	20183	2647	19102	124282;124283;124284;124285	168432;168433;168434;168435;168436;168437	168437			6	
GNIELASSEPQHFTTTVTR	0	Unmodified	2087.0283	0.028346601	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		3	4					1		1	1	4	2	53.35	51.613	2;3	1.1282E-10	44261	160511_QHF_FH_JSI12i_3	126.91	118.12			1.1355	1.0781	14.371	8	2	Median	1.1926	1.0044	NaN	1	0	Median	0.75611	0.94907	NaN	1	0	Median	1.0834	1.0781	8.4489	4	1	Median	1.2759	1.3249	15.98	2	1	Median	787140000	408620000	378520000	93276000	42274000	51002000	105820000	66502000	39315000	342320000	178400000	163920000	245720000	121440000	124280000	20184	5463	19103	124286;124287;124288;124289;124290;124291;124292;124293	168438;168439;168440;168441;168442;168443;168444;168445;168446;168447	168446			9	
GNIETNHNLPPSHK	1	Unmodified	1556.7696	0.76955314	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	12.82	12.875	3;4	0.012283	9957	160511_QHF_FH_JSI12i_3	43.791	30.654			0.93901	0.94523	37.853	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5534	1.4703	NaN	1	0	Median	0.83156	0.80888	22.029	2	1	Median	93946000	47546000	46400000	0	0	0	0	0	0	25809000	7645800	18163000	68137000	39900000	28237000	20185	1738	19104	124294;124295;124296	168448;168449	168449			2	
GNIFANLFK	1	Unmodified	1022.5549	0.5549159	2125	P84077	ARF1	ADP-ribosylation factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	86.751	86.128	2	5.347E-06	74652	160511_QHF_FH_JSI12i_3	132.57	107.64			0.92932	0.91523	2.3219	4	0	Median	1.1272	0.91386	NaN	1	0	Median	0.79297	0.9166	NaN	1	0	Median	0.93109	0.90196	NaN	1	0	Median	0.92755	0.95202	NaN	1	0	Median	256330000	140610000	115710000	44545000	23183000	21362000	37053000	22139000	14913000	62426000	35055000	27371000	112300000	60234000	52068000	20186	2125	19105	124297;124298;124299;124300	168450;168451;168452;168453;168454;168455;168456;168457;168458;168459	168459			10	
GNIFANLFK	1	Acetyl (Protein N-term)	1064.5655	0.56548059	2125	P84077	ARF1	ADP-ribosylation factor 1	yes	yes	0	1	0	0	By MS/MS				2	0		1								1				102.61	102.54	2	0.0016943	90420	160511_QHF_FH_JSI9i_2	63.565	54.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6635000	0	6635000	6635000	0	6635000	0	0	0	0	0	0	0	0	0	20187	2125	19105	124301	168460	168460			1	
GNIIISTPEK	1	Unmodified	1070.5972	0.59717465	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	5.91	3					3	3			1	2	3	3	44.821	38.06	2	0.0012499	22312	160513_QHF_FH_JSI11Kac_4	82.749	52.495			0.89892	0.96604	60.398	9	1	Median	6.221	5.1334	NaN	1	0	Median	0.78254	0.91411	6.929	2	0	Median	1.021	0.96604	29.764	3	0	Median	0.6064	0.64796	23.844	3	1	Plateau	722640000	289140000	433500000	155770000	20701000	135070000	5051700	2744000	2307700	297050000	103110000	193940000	264770000	162590000	102180000	20188	552	19106	124302;124303;124304;124305;124306;124307;124308;124309;124310	168461;168462;168463;168464;168465;168466;168467;168468;168469;168470;168471	168465			10	
GNILSYWIR	0	Unmodified	1120.6029	0.60292873	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.8	6.37			2						3	1		2	2	86.198	80.697	2	3.2706E-05	42270	160513_QHF_FH_JSI11Kac_6	125.53	107.9			0.9429	1.0274	15.786	5	1	Linear	1.1183	0.96342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98391	0.91703	11.671	2	0	Median	0.79388	0.82648	25.891	2	0	Median	295400000	142250000	153150000	108930000	48389000	60542000	0	0	0	100850000	48927000	51923000	85616000	44932000	40684000	20189	4617	19107	124311;124312;124313;124314;124315	168472;168473;168474;168475;168476	168474			5	
GNIMLSQK	1	Unmodified	889.46914	0.46913736	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	22.923	21.884	2	0.0061634	18865	160511_QHF_FH_JSI10i_2	63.419	46.643			0.51169	0.59901	25.632	2	0	Median	NaN	NaN	NaN	0	0	Median	0.58207	0.71803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.44982	0.49971	NaN	1	0	Median	200010000	115490000	84514000	0	0	0	100450000	60906000	39546000	0	0	0	99556000	54587000	44968000	20190	1747	19108	124316;124317	168477;168478	168478			2	
GNINVILVQYK	1	Unmodified	1259.7238	0.72377215	4902	Q9NPH3	IL1RAP	Interleukin-1 receptor accessory protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.629							1	5	3	2	1	3	3	75.419	65.322	2	6.5742E-11	34744	160513_QHF_FH_JSI11Kac_5	133.57	121			1.0711	1.2753	48.263	9	6	Median	0.80801	0.68814	19.293	2	1	Median	1.0711	1.2753	NaN	1	1	Median	1.019	1.0027	61.269	3	2	Plateau	1.313	1.4243	22.837	3	2	Median	77854000	38747000	39107000	23081000	11943000	11138000	3851200	2099700	1751500	35235000	17286000	17949000	15687000	7418500	8268400	20191	4902	19109	124318;124319;124320;124321;124322;124323;124324;124325;124326	168479;168480;168481;168482;168483;168484;168485;168486	168481			8	
GNIVFVTLR	0	Unmodified	1017.5971	0.59711507	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	2	2	2	2	74.839	65.205	2	0.0016828	35354	160513_QHF_FH_JSI11Kac_6	83.623	57.167			1.0346	1.0477	12.039	8	0	Median	1.0514	0.88189	3.1371	2	0	Median	0.8414	1.0028	4.3794	2	0	Median	1.2251	1.1762	1.3059	2	0	Median	1.0118	1.1065	5.9095	2	0	Median	102280000	48374000	53902000	19805000	10333000	9472500	29983000	15047000	14937000	32888000	13430000	19458000	19600000	9564500	10035000	20192	5451	19110	124327;124328;124329;124330;124331;124332;124333;124334	168487;168488;168489;168490;168491;168492;168493;168494;168495	168488			9	
GNIVFVTLRGEK	1	Unmodified	1331.7561	0.75613491	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.688	54.367	3	0.04318	29975	160513_QHF_FH_JSI10Kac_6	33.204	18.946			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20193	5451	19111	124335	168496	168496			1	
GNIVKHPLTQELK	2	Acetyl (K)	1517.8566	0.85657723	2114	P82932	MRPS6	28S ribosomal protein S6, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.192	42.467	3	0.0078507	23044	160513_QHF_FH_JSI11Kac_6	52.101	38.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7710700	7710700	0	0	0	0	0	0	0	7710700	7710700	0	0	0	0	20194	2114	19112	124336	168497	168497	2215		1	
GNIWSAEKGGNSK	2	Acetyl (K)	1388.6684	0.66844211	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	45.467	35.263	2	0.0010298	20523	160513_QHF_FH_JSI12Kac_4	81.865	70.017			0.1889	0.18813	226.92	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.04127	0.03781	NaN	1	1	Median	0.86461	0.93602	NaN	1	0	Median	8745300	5464700	3280600	0	0	0	2174300	2174300	0	2920000	1500200	1419800	3651000	1790200	1860800	20195	4929	19113	124337;124338;124339;124340;124341	168498;168499;168500;168501;168502	168502	3270		5	
GNKEPNPMVQLSIQDVTQESK	2	Unmodified	2341.1584	0.1583745	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	66.963	66.667	3	0.00017964	57652	160511_QHF_FH_JSI12i_3	57.496	48.895			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20196	4399	19114	124342	168503	168503			1	
GNKKKPGMPNVSNDLSQK	4	2 Acetyl (K)	2025.0313	0.031323489	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	3		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	52.408	41.839	3	0.0015699	23318	160513_QHF_FH_JSI10Kac_4	66.152	60.308			0.93458	0.91077	24.46	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66698	0.7992	NaN	1	0	Median	0.93458	0.91077	NaN	1	0	Median	1.1902	1.2833	NaN	1	0	Median	40177000	22100000	18077000	0	0	0	18028000	11290000	6738200	7372700	3934700	3438000	14776000	6875000	7900500	20197	2285	19115	124343;124344;124345	168504;168505;168506	168504	2391;2392;2393		3	
GNKKKPGMPNVSNDLSQK	4	2 Acetyl (K);Oxidation (M)	2041.0262	0.026238111	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	1	3				By MS/MS	14	0							1						1	38.306	28.664	3	0.056213	17192	160513_QHF_FH_JSI12Kac_4	31.233	21.703			1.3721	1.4946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3721	1.4946	NaN	1	0	Median	9901900	4585800	5316100	0	0	0	0	0	0	0	0	0	9901900	4585800	5316100	20198	2285	19115	124346	168507;168508	168508	2391;2392;2393		2	
GNKPWISLPR	1	Unmodified	1166.656	0.65602693	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.17	6.26		1	3						2	2	3	1		51.669	48.033	3	2.7678E-08	40240	160511_QHF_FH_JSI10i_3	124.1	102.64			1.1707	1.3433	36.727	6	4	Median	2.1659	1.8031	15.83	2	2	Median	0.97707	1.1193	33.534	3	2	Median	0.92147	0.85724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	378680000	172150000	206520000	67490000	18838000	48652000	207360000	103110000	104250000	103820000	50202000	53619000	0	0	0	20199	2013	19116	124347;124348;124349;124350;124351;124352	168509;168510;168511;168512;168513;168514;168515;168516	168511			8	
GNKPWISLPR	1	Acetyl (K)	1208.6666	0.66659162	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.7	0.471								2	4			3	3	75.152	65.355	2	2.1145E-09	35434	160513_QHF_FH_JSI11Kac_6	132.39	108.6			0.71426	0.79001	215.59	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34607	0.34156	284.58	3	2	Median	1.1904	1.3016	70.612	2	1	Median	258650000	185960000	72686000	0	0	0	0	0	0	204820000	152060000	52762000	53830000	33906000	19924000	20200	2013	19116	124353;124354;124355;124356;124357;124358	168517;168518;168519;168520;168521;168522;168523;168524	168517	2040		8	
GNKYSAQGER	1	Acetyl (K)	1150.5367	0.53669966	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	12.764	4.9387	2	0.00030463	5332	160513_QHF_FH_JSI11Kac_4	94.692	68.308			0.6663	0.70854	58.348	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0798	1.2952	9.1127	2	0	Median	0.41494	0.40556	6.9455	2	0	Median	0.6663	0.70854	NaN	1	0	Median	43375000	29027000	14349000	0	0	0	7411200	3860700	3550400	29291000	20752000	8538900	6673000	4413500	2259400	20201	323	19117	124359;124360;124361;124362;124363;124364	168525;168526;168527;168528;168529;168530	168527	165		6	
GNLANVIR	0	Unmodified	855.49265	0.49265	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.33	4	5	8				3	4	4	4	8	7	9	35.784	30.945	2	4.8878E-56	17164	160513_QHF_FH_JSI11Kac_6	228.09	143.73			0.98502	1.0689	22.911	24	5	Median	1.361	1.16	7.9552	4	0	Median	0.90375	1.0807	34.586	8	2	Median	1.0153	1.0112	17.634	6	2	Median	0.97915	1.0069	15.523	6	1	Median	22360000000	10472000000	11888000000	2958700000	1140500000	1818200000	7131900000	3538700000	3593200000	6118300000	2814200000	3304100000	6151600000	2978600000	3172900000	20202	1014;826;1013;4626	19118	124365;124366;124367;124368;124369;124370;124371;124372;124373;124374;124375;124376;124377;124378;124379;124380;124381;124382;124383;124384;124385;124386;124387;124388;124389;124390;124391;124392	168531;168532;168533;168534;168535;168536;168537;168538;168539;168540;168541;168542;168543;168544;168545;168546;168547;168548;168549;168550;168551;168552;168553;168554;168555;168556;168557;168558;168559;168560;168561;168562;168563;168564;168565;168566;168567;168568;168569;168570;168571;168572;168573;168574	168544			44	
GNLELEK	1	Unmodified	801.42323	0.42323303	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0			By MS/MS		1	0	1											1		19.755	19.632	2	0.035447	16820	160511_QHF_FH_JSI11i_1	50.703	9.4762		+	1.0437	1.026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0437	1.026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44874000	26519000	18355000	0	0	0	0	0	0	44874000	26519000	18355000	0	0	0	20203	2711	19119	124393	168575	168575			1	
GNLEVLLFTIQSK	1	Unmodified	1460.8239	0.82388012	2162;234	Q01082;O15020	SPTBN1;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.34	83.015	2	7.7011E-51	46260	160513_QHF_FH_JSI11Kac_6	212.09	168.32			0.80481	0.77547	7.9683	4	0	Median	0.90907	0.78472	NaN	1	0	Median	0.58835	0.69007	NaN	1	0	Median	0.81515	0.76632	NaN	1	0	Median	0.7946	0.83569	NaN	1	0	Median	383810000	213300000	170510000	68719000	38844000	29875000	104100000	70645000	33459000	138940000	60972000	77972000	72037000	42837000	29201000	20204	2162;234	19120	124394;124395;124396;124397	168576;168577;168578;168579	168576			4	
GNLGAGNGNLQGPR	0	Unmodified	1323.6644	0.66435979	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.01	4	4	3				3			2	4	4	4	24.303	21.844	2	2.2284E-155	18815	160511_QHF_FH_JSI9i_2	296.52	270.95			0.95438	0.96517	5.7671	14	1	Median	1.1417	0.9521	4.9477	2	0	Median	0.79223	0.95468	8.7891	4	1	Median	0.9849	0.96399	5.2596	4	0	Median	0.94483	0.9939	4.6993	4	0	Median	1462200000	733790000	728410000	248120000	112420000	135710000	311610000	174200000	137410000	533010000	270030000	262980000	369460000	177150000	192310000	20205	1556	19121	124398;124399;124400;124401;124402;124403;124404;124405;124406;124407;124408;124409;124410;124411	168580;168581;168582;168583;168584;168585;168586;168587;168588;168589;168590;168591;168592;168593;168594;168595;168596;168597;168598;168599;168600;168601;168602;168603;168604	168596			25	
GNLLHFPSSQGEEEK	1	Unmodified	1670.79	0.79001381	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		43.6	43.6	3	0.021371	38482	160511_QHF_FH_JSI11i_3	36.469	24.492			0.39833	0.38181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39833	0.38181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	303220000	222810000	80410000	0	0	0	0	0	0	303220000	222810000	80410000	0	0	0	20206	2320	19122	124412	168605	168605			1	
GNLLIYNHQTSR	0	Unmodified	1414.7317	0.73171107	3646	Q8NEZ3	WDR19	WD repeat-containing protein 19	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			37.965	29.383	3	0.02001	16493	160513_QHF_FH_JSI10Kac_6	30.874	18.247			0.67354	0.78652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67354	0.78652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4405300	3197200	1208100	0	0	0	4405300	3197200	1208100	0	0	0	0	0	0	20207	3646	19123	124413	168606	168606			1	
GNLLLTGDK	1	Unmodified	929.5182	0.51819605	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.2	0.4	4	1								2			3	37.356	36.445	2	0.0022636	31059	160511_QHF_FH_JSI12i_2	66.27	51.495			1.1367	1.0579	12.263	4	4	Median	1.4412	1.183	18.041	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0056	1.0579	0.94236	2	2	Median	167500000	80348000	87155000	69425000	32763000	36662000	0	0	0	0	0	0	98078000	47585000	50493000	20208	2947	19124	124414;124415;124416;124417;124418	168607;168608;168609;168610;168611;168612	168607			6	
GNLMHVLK	1	Unmodified	910.50586	0.50585722	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	30.995	30.501	3	0.00084375	26281	160511_QHF_FH_JSI11i_3	71.501	60.141			0.82243	0.7801	17.708	3	0	Median	0.95909	0.7801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65342	0.59768	NaN	1	0	Median	0.82243	0.83579	NaN	1	0	Median	320100000	158740000	161370000	79817000	36393000	43424000	0	0	0	91421000	38077000	53344000	148870000	84267000	64598000	20209	2437	19125	124419;124420;124421	168613;168614	168613			2	
GNLPGVK	1	Unmodified	683.39662	0.39662435	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	17.317	17.036	2	0.010853	14712	160511_QHF_FH_JSI12i_1	73.039	28.632			1.0932	1.027	9.4622	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86109	1.0009	NaN	1	0	Median	1.0932	1.027	NaN	1	0	Median	1.1588	1.1926	NaN	1	0	Median	222860000	137310000	85551000	0	0	0	87011000	51976000	35034000	64239000	42345000	21894000	71616000	42993000	28622000	20210	1035	19126	124422;124423;124424	168615;168616;168617	168616			3	
GNLPTSGNISGFIR	0	Unmodified	1431.747	0.74702678	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.199	64.909	2	0.0012015	56066	160511_QHF_FH_JSI12i_3	78.692	58.388			1.234	1.2576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.234	1.2576	NaN	1	1	Median	25966000	11781000	14185000	0	0	0	0	0	0	0	0	0	25966000	11781000	14185000	20211	4936	19127	124425	168618	168618			1	
GNLSGNSHKHK	2	Acetyl (K)	1219.6058	0.60578227	3742	Q8TF01	PNISR	Arginine/serine-rich protein PNISR	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		5.5419	-3.8223	3	0.0016918	1743	160513_QHF_FH_JSI11Kac_6	65.5	49.961			0.074768	0.079425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074768	0.079425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1639300	1572000	67281	0	0	0	0	0	0	1639300	1572000	67281	0	0	0	20212	3742	19128	124426	168619	168619	2926		1	
GNLTNMETNGVVPGM	0	Unmodified	1532.6963	0.69631312	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	74.046	73.305	2	4.208E-44	65172	160511_QHF_FH_JSI9i_1	175.33	160.86			1.0975	1.0259	0.8123	2	2	Median	1.2343	1.0318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9758	1.02	NaN	1	1	Median	270190000	100800000	169390000	145550000	52301000	93250000	0	0	0	0	0	0	124640000	48503000	76139000	20213	1395	19129	124427;124428;124429	168620;168621;168622	168622			3	
GNLTYGYVTILNGSDIR	0	Unmodified	1854.9476	0.94757708	911	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.494	47.096	3	0.058264	40229	160511_QHF_FH_JSI12i_2	17.718	6.674			0.70602	0.79081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70602	0.79081	NaN	1	0	Median	273950000	159530000	114420000	0	0	0	0	0	0	0	0	0	273950000	159530000	114420000	20214	911	19130	124430	168623	168623			1	
GNLVYIIDFGLAK	1	Unmodified	1421.7919	0.79185171	1634	P48730	CSNK1D	Casein kinase I isoform delta	no	no	0	0	0	0		By MS/MS			16	0									1		1			91.868	86.147	2	2.1044E-08	49230	160513_QHF_FH_JSI10Kac_6	141.08	113.99			0.85918	1.0249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85918	1.0249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97716000	51709000	46007000	0	0	0	97716000	51709000	46007000	0	0	0	0	0	0	20215	1634	19131	124431	168624	168624			1	
GNLYSFGCPEYGQLGHNSDGK	1	Unmodified	2298.9964	0.99639455	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.787	58.127	3	2.4317E-15	50024	160511_QHF_FH_JSI12i_3	130.37	126.98			1.1876	1.1066	22.059	6	1	Median	1.3974	1.1969	NaN	1	0	Median	0.84847	1.0231	NaN	1	0	Median	0.96513	0.92914	11.954	2	1	Median	1.3788	1.4734	0.17376	2	0	Median	555400000	252630000	302780000	41266000	19027000	22239000	65106000	35293000	29813000	234950000	113330000	121620000	214090000	84976000	129110000	20216	5200	19132	124432;124433;124434;124435;124436;124437	168625;168626;168627;168628;168629;168630	168630			6	
GNMALAIK	1	Unmodified	816.45276	0.45275902	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.381	33.445	2	0.00089666	29385	160511_QHF_FH_JSI10i_2	117.93	80.288			0.45201	0.47507	56.742	4	4	Median	0.45413	0.38549	NaN	1	1	Median	0.36724	0.44795	NaN	1	1	Median	1.3358	1.3492	NaN	1	1	Median	0.4499	0.50382	NaN	1	1	Median	610690000	460070000	150620000	200820000	168120000	32697000	201630000	168380000	33250000	112120000	52250000	59874000	96113000	71314000	24799000	20217	3175	19133	124438;124439;124440;124441	168631;168632;168633;168634	168634			4	
GNMEVAR	0	Unmodified	775.36467	0.36467229	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	8.6891	8.1389	2	0.0084619	5888	160511_QHF_FH_JSI12i_2	83.364	56.499			1.3238	1.2948	29.911	2	1	Median	1.8562	1.5998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94416	1.048	NaN	1	0	Median	137290000	66162000	71125000	59012000	26600000	32412000	0	0	0	0	0	0	78274000	39561000	38713000	20218	3240	19134	124442;124443	168635;168636;168637	168636			3	
GNMLFSLIGEGHK	1	Unmodified	1401.7075	0.70747015	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							3	3	1	1	76.758	75.807	2;3	1.0381E-05	65617	160511_QHF_FH_JSI12i_3	92.856	86.823			0.86554	0.9327	25.086	7	1	Median	1.1868	0.98639	0.30897	2	0	Median	0.85729	1.0034	38.306	3	1	Plateau	1.0155	0.9327	NaN	1	0	Median	0.86554	0.88761	NaN	1	0	Median	500530000	252590000	247940000	90257000	43733000	46523000	76553000	42060000	34493000	153190000	71617000	81577000	180520000	95176000	85349000	20219	3588	19135	124444;124445;124446;124447;124448;124449;124450;124451	168638;168639;168640;168641;168642;168643;168644;168645;168646;168647;168648;168649;168650;168651;168652;168653;168654;168655	168654			18	
GNMLFSLIGEGHK	1	Oxidation (M)	1417.7024	0.70238478	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			63.39	61.881	3	0.014558	51887	160511_QHF_FH_JSI10i_3	44.511	32.345			1.0789	1.0269	5.7899	2	2	Median	1.2181	0.98575	NaN	1	1	Median	0.95555	1.0699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38487000	21133000	17354000	18368000	10061000	8306600	20119000	11072000	9047400	0	0	0	0	0	0	20220	3588	19135	124452;124453	168656;168657	168656		2271	2	
GNMMSNFFGK	1	Unmodified	1131.4841	0.4841355	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	64.999	63.905	2	3.0924E-06	55088	160511_QHF_FH_JSI12i_3	110.87	105.09			0.85926	0.88075	5.2861	3	0	Median	1.0821	0.8771	NaN	1	0	Median	0.8072	0.96312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85926	0.88075	NaN	1	0	Median	272470000	140620000	131850000	82384000	35251000	47133000	77985000	42588000	35397000	0	0	0	112100000	62783000	49320000	20221	2618	19136	124454;124455;124456	168658;168659;168660	168660			3	
GNMSSLGFTSK	1	Unmodified	1127.5281	0.52810881	4556	Q9BZC7	ABCA2	ATP-binding cassette sub-family A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		34.375	34.079	2	0.0077279	30604	160511_QHF_FH_JSI11i_1	50.607	25.831			0.86121	0.91724	18.182	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69735	0.80658	NaN	1	0	Median	1.0636	1.0431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	452840000	244060000	208770000	0	0	0	203520000	124860000	78661000	249320000	119200000	130110000	0	0	0	20222	4556	19137	124457;124458	168661;168662	168662			2	
GNNESYHYAR	0	Unmodified	1209.5163	0.51629857	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.3824	7.4801	2	0.0001876	4944	160511_QHF_FH_JSI12i_3	93.649	79.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20223	2216	19138	124459	168663	168663			1	
GNNFLYTNGK	1	Unmodified	1126.5407	0.5407224	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.619	30.288	2	0.0027215	26916	160511_QHF_FH_JSI10i_1	72.325	59.288			1.7752	2.1394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7752	2.1394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269260000	75790000	193470000	0	0	0	269260000	75790000	193470000	0	0	0	0	0	0	20224	472	19139	124460	168664	168664			1	
GNNFNHISPIPPVPHPR	0	Unmodified	1891.9805	0.98054897	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				52.367	50.777	4	5.7365E-05	41684	160511_QHF_FH_JSI9i_3	60.209	48.736			1.3116	1.0482	NaN	1	0	Median	1.3116	1.0482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48478000	21135000	27343000	48478000	21135000	27343000	0	0	0	0	0	0	0	0	0	20225	4886	19140	124461	168665	168665			1	
GNNNVMSNYEAYKPSTGAMGDR	1	Unmodified	2375.027	0.027042747	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								1	2			48.986	47.978	3	1.2553E-14	42361	160511_QHF_FH_JSI10i_2	125.09	111.08			0.80514	0.83556	19.89	2	1	Median	1.0976	0.96174	NaN	1	0	Median	0.5906	0.72594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67773000	36591000	31182000	33384000	12348000	21036000	34389000	24243000	10145000	0	0	0	0	0	0	20226	3377	19141	124462;124463;124464	168666;168667;168668;168669;168670	168669			5	
GNNVLYISTQK	1	Unmodified	1235.651	0.65100113	2000	P62312	LSM6	U6 snRNA-associated Sm-like protein LSm6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	5.99	3	4			1	3	3	1		3	5	3	4	45.695	39.976	2	8.4005E-14	36134	160511_QHF_FH_JSI12i_1	153.97	136.87			0.82877	0.89638	25.571	13	5	Median	0.92707	0.7957	25.92	2	2	Median	0.63564	0.75566	33.098	4	1	Median	0.94771	0.89638	27.57	3	1	Median	0.83911	0.89006	22.147	4	1	Median	337830000	192110000	145720000	16693000	8061400	8631500	111540000	70910000	40627000	107950000	56718000	51229000	101650000	56420000	45235000	20227	2000	19142	124465;124466;124467;124468;124469;124470;124471;124472;124473;124474;124475;124476;124477;124478;124479	168671;168672;168673;168674;168675;168676;168677;168678;168679;168680;168681;168682;168683;168684;168685;168686;168687;168688;168689;168690;168691	168673			21	
GNNVYCLDR	0	Unmodified	1109.4924	0.492392	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		33.21	23.971	2	0.02731	15057	160513_QHF_FH_JSI11Kac_4	48.283	38.296			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20228	1805	19143	124480	168692	168692			1	
GNPADVTEAR	0	Unmodified	1028.4887	0.48868683	360	O43688	PPAP2C	Lipid phosphate phosphohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	16.347	12.972	2	2.0291E-07	11299	160511_QHF_FH_JSI10i_1	117.01	92.195			1.0223	1.0454	14.584	7	0	Median	1.2535	1.0454	NaN	1	0	Median	0.67457	0.80078	1.7823	2	0	Median	1.061	1.0651	2.649	2	0	Median	1.0132	1.1018	0.87116	2	0	Median	978750000	500110000	478640000	205050000	90742000	114310000	265810000	158030000	107780000	236390000	112330000	124050000	271510000	139010000	132500000	20229	360	19144	124481;124482;124483;124484;124485;124486;124487	168693;168694;168695;168696;168697;168698;168699;168700;168701;168702;168703;168704	168698			12	
GNPDSVSNTPEMEQR	0	Unmodified	1659.7159	0.71586259	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.56	23.016	2	3.2847E-81	20039	160511_QHF_FH_JSI11i_1	250.69	220.48			1.0065	1.047	7.3901	4	0	Linear	1.1197	0.93421	NaN	1	0	Median	0.75568	0.89287	NaN	1	0	Median	1.0947	1.0625	NaN	1	0	Median	0.92539	0.97142	NaN	1	0	Median	311080000	154800000	156280000	77986000	35709000	42277000	73582000	41149000	32433000	81466000	41620000	39846000	78049000	36324000	41725000	20230	285	19145	124488;124489;124490;124491	168705;168706;168707;168708;168709;168710;168711;168712	168706			8	
GNPDSVSNTPEMEQR	0	Oxidation (M)	1675.7108	0.71077721	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	1	0	By MS/MS				1	0	2									2				24.303	23.077	2	0.0001065	19776	160511_QHF_FH_JSI9i_1	79.82	69.816			1.1656	0.93801	NaN	1	1	Median	1.1656	0.93801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19428000	8143900	11285000	19428000	8143900	11285000	0	0	0	0	0	0	0	0	0	20231	285	19145	124492;124493	168713;168714	168714		113	2	
GNPICSLHDQGAGGNGNVLK	1	Unmodified	2006.9592	0.95922118	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.273	42.162	3	1.5764E-14	37391	160511_QHF_FH_JSI11i_3	115.34	109.36			1.009	0.99698	45.13	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74469	0.72459	NaN	1	0	Median	1.3672	1.3718	NaN	1	0	Median	138720000	75718000	63001000	0	0	0	0	0	0	63065000	36872000	26192000	75653000	38845000	36808000	20232	241	19146	124494;124495	168715;168716	168715			1	
GNPQNQVLLHK	1	Unmodified	1246.6782	0.67821894	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.161	20.175	2	0.0086051	16434	160511_QHF_FH_JSI12i_3	50.04	32.221			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20233	2546	19147	124496	168717	168717			1	
GNPTVEVDLFTSK	1	Unmodified	1405.7089	0.70890994	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	5.08	8		2			2	1			3	4	2	4	69.874	67.176	2;3	4.1325E-41	60849	160511_QHF_FH_JSI10i_1	206.58	4.9756			0.87626	0.89274	26.67	13	5	Plateau	1.0667	0.83032	1.7885	3	0	Plateau	0.66113	0.97624	33.661	4	1	Linear	0.93686	0.91839	7.35	2	1	Median	1.2108	1.2785	25.961	4	3	Median	9545000000	4797300000	4747800000	1423000000	647420000	775600000	3267700000	1673000000	1594800000	2208400000	1131300000	1077100000	2645800000	1345600000	1300300000	20234	854	19148	124497;124498;124499;124500;124501;124502;124503;124504;124505;124506;124507;124508;124509	168718;168719;168720;168721;168722;168723;168724;168725;168726;168727;168728;168729;168730;168731;168732;168733;168734;168735;168736;168737;168738;168739;168740;168741;168742;168743	168729			26	
GNPTVEVDLHTAK	1	Unmodified	1379.7045	0.70449327	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	34.755	33.963	2;3	7.8647E-07	28920	160511_QHF_FH_JSI12i_2	130.56	113.54			1.0474	1.0353	27.76	7	1	Median	1.3438	1.1524	19.522	2	1	Median	1.0739	1.304	15.294	2	0	Median	1.0094	1.0085	3.715	2	0	Median	0.57856	0.61563	NaN	1	0	Median	423640000	219550000	204090000	91531000	44643000	46888000	165560000	93938000	71619000	140360000	67725000	72633000	26198000	13248000	12951000	20235	1044	19149	124510;124511;124512;124513;124514;124515;124516	168744;168745;168746;168747;168748;168749;168750;168751	168745			8	
GNPTVEVDLYTAK	1	Unmodified	1405.7089	0.70890994	922	P09104	ENO2	Gamma-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.36	3		2			1	1			2	1	1	3	70.517	67.098	2	0.0001272	59605	160511_QHF_FH_JSI9i_1	86.313	0.79102			0.89197	0.87383	8.9413	7	2	Median	1.0469	0.83518	2.4841	2	0	Median	0.74728	0.87383	NaN	1	0	Median	0.89197	0.87188	NaN	1	0	Median	0.87831	0.94629	9.5264	3	2	Median	6210900000	3109900000	3100900000	1376200000	633810000	742390000	248500000	143420000	105080000	2090300000	1065100000	1025300000	2495800000	1267600000	1228200000	20236	922	19150	124517;124518;124519;124520;124521;124522;124523	168752;168753;168754;168755;168756;168757;168758;168759	168757			8	
GNQLQEFAAMLMPHQK	1	Unmodified	1841.8917	0.89165888	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	2	3	97.975	97.837	2;3	2.8079E-11	84450	160511_QHF_FH_JSI12i_3	109.24	84.945			0.95047	1.034	6.7495	8	1	Median	1.2666	1.1019	8.4292	2	1	Median	0.86749	1.034	0.28418	2	0	Median	0.97681	0.95445	1.8408	2	0	Median	0.95047	1.0229	6.0582	2	0	Median	873140000	435200000	437940000	102380000	41438000	60938000	112480000	58089000	54392000	254120000	114390000	139730000	404170000	221290000	182880000	20237	4411	19151	124524;124525;124526;124527;124528;124529;124530;124531;124532;124533	168760;168761;168762;168763;168764;168765;168766;168767;168768;168769;168770;168771;168772;168773;168774;168775;168776;168777;168778;168779;168780;168781;168782	168782			23	
GNQLQEFAAMLMPHQK	1	Oxidation (M)	1857.8866	0.88657351	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			3									1	2	84.042	83.946	3	1.0274E-05	72779	160511_QHF_FH_JSI12i_3	97.836	85.551			1.132	1.0889	9.5759	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2603	1.1652	NaN	1	0	Median	1.0167	1.0176	NaN	1	0	Median	144010000	72473000	71540000	0	0	0	0	0	0	51192000	25776000	25416000	92821000	46697000	46124000	20238	4411	19151	124534;124535;124536	168783;168784;168785	168783		2468;2469	3	
GNRTENFTK	1	Unmodified	1065.5203	0.52032131	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			3							2	1			6.9736	6.4315	2;3	0.0056982	4340	160511_QHF_FH_JSI9i_3	40.496	22.36			0.91813	0.75477	18.251	3	0	Median	1.0225	0.8396	15.064	2	0	Median	0.5547	0.64952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93678000	52447000	41231000	65618000	34337000	31281000	28060000	18110000	9950000	0	0	0	0	0	0	20239	5053	19152	124537;124538;124539	168786;168787	168786			2	
GNSGLGFSIAGGTDNPHIGDDSSIFITK	1	Unmodified	2776.3304	0.33040186	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.4	87.269	3	7.7123E-08	75766	160511_QHF_FH_JSI12i_3	64.583	61.484			1.3131	1.3365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3131	1.3365	NaN	1	0	Median	36773000	14373000	22400000	0	0	0	0	0	0	0	0	0	36773000	14373000	22400000	20240	2330	19153	124540	168788	168788			1	
GNSGQSVYSASK	1	Unmodified	1183.5469	0.54692999	3532	Q8N4T8	CBR4	Carbonyl reductase family member 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.4281	9.3054	2	0.00063192	7035	160511_QHF_FH_JSI11i_1	81.92	59.278			2.9321	2.8375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9321	2.8375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26053000	5826800	20226000	0	0	0	0	0	0	26053000	5826800	20226000	0	0	0	20241	3532	19154	124541	168789	168789			1	
GNSIIMLEALER	0	Unmodified	1344.7071	0.7071358	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.895	80.782	2	5.7549E-05	70087	160511_QHF_FH_JSI12i_3	108.37	89.101			0.65254	0.63606	28.211	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5536	0.52103	NaN	1	1	Median	0.76917	0.77648	NaN	1	1	Median	114000000	69606000	44396000	0	0	0	0	0	0	58015000	36024000	21991000	55987000	33582000	22405000	20242	37	19155	124542;124543	168790;168791	168791			2	
GNSIIMLEALERV	0	Unmodified	1443.7755	0.77554972	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.32	5.54		8	7						4	4	3	6	6	97.464	95.335	2;3	6.2397E-41	85788	160511_QHF_FH_JSI12i_2	244.71	223.84			1.0893	1.0948	26.067	18	2	Median	1.0296	0.87005	17.478	4	0	Median	0.822	1.0202	17.663	3	0	Median	1.1032	1.1129	17.8	5	1	Median	1.0775	1.1569	35.324	6	1	Median	1785600000	869040000	916530000	344370000	160950000	183430000	204430000	114610000	89817000	643820000	306050000	337770000	592940000	287430000	305510000	20243	37	19156	124544;124545;124546;124547;124548;124549;124550;124551;124552;124553;124554;124555;124556;124557;124558;124559;124560;124561;124562	168792;168793;168794;168795;168796;168797;168798;168799;168800;168801;168802;168803;168804;168805;168806;168807;168808;168809;168810;168811;168812;168813;168814;168815;168816;168817;168818;168819;168820;168821;168822;168823;168824;168825;168826	168797			35	
GNSIIMLEALERV	0	Oxidation (M)	1459.7705	0.77046434	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	0	1	1				By MS/MS	3	0			1										1	83.787	83.596	2	0.022056	72512	160511_QHF_FH_JSI12i_3	68.069	41.626			1.6949	1.7474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6949	1.7474	NaN	1	1	Median	17028000	7614400	9414000	0	0	0	0	0	0	0	0	0	17028000	7614400	9414000	20244	37	19156	124563	168827	168827			1	
GNSLFFR	0	Unmodified	839.42899	0.42898711	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			45.848	44.471	2	4.0954E-05	37148	160511_QHF_FH_JSI10i_3	140.98	86.928			0.99974	0.96919	14.709	3	0	Plateau	1.3601	1.091	NaN	1	0	Median	0.70469	0.84699	2.3133	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	625270000	321040000	304230000	266530000	114170000	152360000	358740000	206870000	151870000	0	0	0	0	0	0	20245	5717	19157	124564;124565;124566	168828;168829;168830;168831;168832	168828			5	
GNSLQEILER	0	Unmodified	1157.6041	0.60405094	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	57.808	57.144	2	6.5683E-11	50506	160511_QHF_FH_JSI10i_2	166.66	104.08			1.1181	1.1245	4.1137	6	0	Median	1.2801	1.0855	NaN	1	0	Median	0.92355	1.1523	NaN	1	0	Median	1.2069	1.1741	2.4077	2	0	Median	1.013	1.088	1.2131	2	0	Median	996190000	481970000	514220000	139540000	70952000	68589000	171250000	93116000	78136000	323290000	142010000	181280000	362110000	175890000	186210000	20246	2147	19158	124567;124568;124569;124570;124571;124572	168833;168834;168835;168836;168837;168838;168839;168840	168838			7	
GNSLTLIDLPGHESLR	0	Unmodified	1720.9108	0.91079765	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	2	5	4	70.184	69.483	2;3	4.3386E-17	61616	160511_QHF_FH_JSI11i_3	126.63	116.02			0.83716	0.83182	50.779	12	0	Median	0.93981	0.80068	12.535	2	0	Median	0.2934	0.35499	116.87	2	0	Median	0.92026	0.89392	24.736	4	0	Median	0.82217	0.88421	15.392	4	0	Median	1621100000	883750000	737350000	241220000	118900000	122320000	218330000	174980000	43346000	617260000	316290000	300970000	544290000	273580000	270710000	20247	5669	19159	124573;124574;124575;124576;124577;124578;124579;124580;124581;124582;124583;124584;124585	168841;168842;168843;168844;168845;168846;168847;168848;168849;168850;168851;168852;168853;168854;168855;168856;168857	168844			15	
GNSPNSEPPTPK	1	Unmodified	1223.5782	0.57823012	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.355	11.045	2	0.0066647	8878	160511_QHF_FH_JSI10i_1	52.247	40.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20248	1628	19160	124586;124587	168858;168859	168859			2	
GNSSESIEAIREYEEEFFQNSK	1	Unmodified	2592.1616	0.1616052	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		92.866	92.866	3	2.5455E-15	82719	160511_QHF_FH_JSI11i_3	128.55	125.75			1.1393	1.0256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1393	1.0256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48442000	22062000	26380000	0	0	0	0	0	0	48442000	22062000	26380000	0	0	0	20249	409	19161	124588	168860;168861;168862	168860			3	
GNTAAQLSK	1	Unmodified	888.46649	0.46649483	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.15	5		2		1	2				2	4	1	3	9.2804	6.7802	2	2.3536E-08	6180	160511_QHF_FH_JSI12i_1	157.96	98.975			0.92539	0.93511	25.578	10	7	Median	0.96709	0.79075	20.045	2	2	Median	0.79233	0.9372	34.647	4	3	Median	0.97726	0.95968	NaN	1	0	Median	0.98041	1.0488	27.855	3	2	Median	3596100000	1815200000	1780800000	641800000	324080000	317720000	1679400000	863420000	815940000	17872000	7276900	10595000	1257000000	620450000	636580000	20250	1363	19162	124589;124590;124591;124592;124593;124594;124595;124596;124597;124598	168863;168864;168865;168866;168867;168868;168869;168870;168871;168872;168873;168874	168866			12	
GNTAAQMAQILSFNK	1	Oxidation (M)	1608.793	0.7929907	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	53.309	52.802	2;3	4.9003E-07	46688	160511_QHF_FH_JSI11i_3	139.48	124.33			1.1187	1.1264	1.6332	4	2	Median	NaN	NaN	NaN	0	0	Median	0.97528	1.1327	NaN	1	1	Median	1.2025	1.1201	NaN	1	0	Median	1.1187	1.1325	2.6608	2	1	Median	205470000	92894000	112580000	0	0	0	12346000	7644100	4701800	38321000	12725000	25596000	154810000	72525000	82282000	20251	1425	19163	124599;124600;124601;124602;124603;124604	168875;168876;168877;168878;168879;168880;168881;168882;168883	168876		1083	9	
GNTAAQMAQILSFNK	1	Unmodified	1592.7981	0.79807608	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	6	9	8	8					5	4	7	9	11	7	79.308	76.203	2;3	7.706E-184	67860	160511_QHF_FH_JSI12i_3	382.9	352.22			0.91806	0.94264	15.133	33	2	Median	1.1386	0.92633	17.101	7	1	Median	0.82035	0.94649	11.216	9	0	Median	0.93661	0.91789	16.836	10	1	Median	0.94261	0.96561	17.524	7	0	Median	6674000000	3309800000	3364200000	785010000	350660000	434350000	1199200000	676830000	522360000	2347700000	1110600000	1237100000	2342200000	1171800000	1170400000	20252	1425	19163	124605;124606;124607;124608;124609;124610;124611;124612;124613;124614;124615;124616;124617;124618;124619;124620;124621;124622;124623;124624;124625;124626;124627;124628;124629;124630;124631;124632;124633;124634;124635;124636;124637;124638	168884;168885;168886;168887;168888;168889;168890;168891;168892;168893;168894;168895;168896;168897;168898;168899;168900;168901;168902;168903;168904;168905;168906;168907;168908;168909;168910;168911;168912;168913;168914;168915;168916;168917;168918;168919;168920;168921;168922;168923;168924;168925;168926;168927;168928;168929;168930;168931;168932;168933;168934;168935;168936;168937;168938;168939;168940;168941;168942;168943;168944;168945;168946;168947;168948;168949;168950;168951;168952	168948			67	
GNTAAYLLYAFTR	0	Unmodified	1459.746	0.74596415	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.72	3		8						8	5	5	5	4	87.748	83.672	2;3	1.177E-110	44480	160513_QHF_FH_JSI11Kac_6	272.97	245.66			0.86177	0.89688	9.9929	17	0	Median	1.1469	0.9776	7.7866	3	0	Median	0.78094	0.89688	10.685	5	0	Median	0.92162	0.87311	7.2924	5	0	Median	0.86081	0.88059	13.841	4	0	Median	8733000000	4495500000	4237500000	2013600000	961200000	1052400000	2256200000	1222300000	1033800000	2928400000	1492800000	1435600000	1534800000	819170000	715640000	20253	1818	19164	124639;124640;124641;124642;124643;124644;124645;124646;124647;124648;124649;124650;124651;124652;124653;124654;124655;124656;124657	168953;168954;168955;168956;168957;168958;168959;168960;168961;168962;168963;168964;168965;168966;168967;168968;168969;168970;168971;168972;168973;168974;168975;168976;168977;168978;168979;168980;168981;168982	168961			30	
GNTAEGCVHETQEK	1	Unmodified	1558.6682	0.66818411	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	7.6221	7.3274	3	0.00048569	5207	160511_QHF_FH_JSI12i_1	71.98	60.366			1.3057	1.4428	10.025	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1285	1.344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5108	1.5488	NaN	1	1	Median	71054000	32007000	39047000	0	0	0	37184000	21526000	15658000	0	0	0	33870000	10481000	23390000	20254	4361	19165	124658;124659	168983;168984	168983			1	
GNTHTEILK	1	Unmodified	1011.5349	0.53490874	61	CON__P34955			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	11.033	10.603	2	5.2583E-06	8009	160511_QHF_FH_JSI11i_2	133.13	106		+	1.088	1.3238	30.909	3	2	Median	1.6238	1.386	NaN	1	1	Median	1.088	1.3238	NaN	1	0	Median	0.796	0.79419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108890000	54274000	54617000	21412000	7487600	13924000	36089000	19980000	16109000	51390000	26807000	24583000	0	0	0	20255	61	19166	124660;124661;124662;124663;124664	168985;168986;168987;168988;168989	168988			5	
GNTISPIIK	1	Unmodified	941.55458	0.55458155	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.33	0.471	4	2								2	1	2	1	36.951	36.297	2	0.00062933	30907	160511_QHF_FH_JSI11i_2	87.639	61.745			1.0519	1.0473	14.878	6	1	Median	1.3146	1.1057	27.021	2	0	Median	0.99409	1.184	NaN	1	0	Median	1.0297	0.98641	10.464	2	1	Median	0.99944	1.0327	NaN	1	0	Median	359460000	173440000	186020000	94575000	38341000	56234000	75806000	38302000	37504000	115550000	58570000	56980000	73534000	38231000	35303000	20256	2241	19167	124665;124666;124667;124668;124669;124670	168990;168991;168992;168993;168994;168995	168995			6	
GNTLKNIEK	2	Acetyl (K)	1057.5768	0.57677356	2689	Q15637	SF1	Splicing factor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	36.15	27.297	2	0.0032882	16551	160513_QHF_FH_JSI11Kac_4	82.417	48.164			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7811900	6447100	1364900	0	0	0	1364900	0	1364900	4765400	4765400	0	1681600	1681600	0	20257	2689	19168	124671;124672;124673;124674	168996;168997;168998;168999	168997	2632		4	
GNTLYVYGEDMTPTLLR	0	Unmodified	1941.9506	0.95061355	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	88.255	87.54	2	4.9797E-05	79779	160511_QHF_FH_JSI12i_1	81.647	48.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20258	1142	19169	124675;124676	169000;169001	169001			2	
GNTMQQFLQK	1	Unmodified	1193.5863	0.58629239	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.54	1	3	2					1		1	1	3	2	47.916	45.647	2	2.2355E-09	38786	160511_QHF_FH_JSI12i_3	150.27	133.03			0.57123	0.5091	53.601	6	4	Median	0.52	0.43578	NaN	1	1	Median	0.33176	0.40325	NaN	1	1	Median	0.62751	0.59475	49.618	3	2	Median	1.3451	1.3735	NaN	1	0	Median	1145400000	743910000	401460000	231890000	166460000	65436000	253600000	204850000	48750000	409320000	259100000	150210000	250560000	113500000	137060000	20259	2529	19170	124677;124678;124679;124680;124681;124682;124683	169002;169003;169004;169005;169006;169007;169008;169009;169010;169011	169011			10	
GNTPATGTTQGK	1	Unmodified	1131.552	0.55201537	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.67	5.19	4				2					1		2	3	6.1657	3.0655	2	6.6041E-10	3556	160511_QHF_FH_JSI12i_1	123.51	90.673			1.039	0.98397	26.651	5	2	Median	1.039	0.86076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2669	1.2458	7.9207	2	0	Median	0.7664	0.81123	27.301	2	1	Median	626770000	310110000	316650000	160140000	78772000	81366000	0	0	0	241230000	101320000	139910000	225390000	130020000	95375000	20260	5213	19171	124684;124685;124686;124687;124688;124689	169012;169013;169014;169015;169016;169017;169018	169016			6	
GNTPLHVASK	1	Unmodified	1022.5509	0.55089316	2507	Q14161	GIT2	ARF GTPase-activating protein GIT2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.603	11.692	2	0.00051541	8905	160511_QHF_FH_JSI12i_3	72.2	55.424			0.90841	0.94173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90841	0.94173	NaN	1	0	Median	39610000	21045000	18565000	0	0	0	0	0	0	0	0	0	39610000	21045000	18565000	20261	2507	19172	124690;124691	169019;169020;169021	169021			3	
GNTQATSHSFDVR	0	Unmodified	1418.6539	0.65385468	2929	Q5SWX8	ODR4	Protein odr-4 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	15.566	15.598	2;3	1.8392E-40	12371	160511_QHF_FH_JSI12i_3	178.81	155.39			1.2499	1.217	8.2004	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3875	1.2897	NaN	1	0	Median	1.126	1.1485	NaN	1	0	Median	128640000	60139000	68498000	0	0	0	0	0	0	77831000	30982000	46849000	50807000	29157000	21649000	20262	2929	19173	124692;124693;124694	169022;169023;169024;169025	169025			4	
GNTVLEFLVGLFK	1	Unmodified	1435.8075	0.80750177	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		101.17	93.722	2	1.1975E-50	53235	160513_QHF_FH_JSI9Kac_6	209.19	179.72			0.8465	0.85155	27.582	2	1	Median	0.8342	0.70066	NaN	1	0	Median	0.85899	1.0349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	477870000	261930000	215930000	185000000	102730000	82270000	292870000	159210000	133660000	0	0	0	0	0	0	20263	265	19174	124695;124696;124697;124698	169026;169027;169028;169029;169030	169028			5	
GNVAKTSR	1	Acetyl (K)	873.46683	0.46682918	5751	Q9Y6X1	SERP1	Stress-associated endoplasmic reticulum protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.745					1	2	3				3	1	2	7.2162	-0.58285	2	0.00090511	2552	160513_QHF_FH_JSI12Kac_3	109.71	83.82			1.0644	1.0166	16.149	6	0	Linear	NaN	NaN	NaN	0	0	Median	0.85723	1.0209	8.8289	3	0	Plateau	0.81641	0.79841	NaN	1	0	Median	1.0902	1.1872	4.1151	2	0	Median	62627000	31967000	30660000	0	0	0	27113000	15032000	12081000	7188600	3540600	3648000	28326000	13395000	14931000	20264	5751	19175	124699;124700;124701;124702;124703;124704	169031;169032;169033;169034;169035;169036;169037;169038	169034	3548		8	
GNVDEELSK	1	Unmodified	989.46655	0.46655441	1516	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	2	4	3	20.741	16.493	2	1.8526E-06	14195	160511_QHF_FH_JSI10i_1	129.63	85.508			0.91779	0.99912	33.736	9	1	Median	0.48087	0.38852	NaN	1	1	Median	0.94231	1.12	1.4536	2	0	Median	1.0776	1.0631	18.359	3	0	Median	0.79784	0.85075	11.326	3	0	Median	1058700000	597020000	461670000	232790000	152870000	79923000	276410000	160270000	116140000	282720000	148900000	133820000	266770000	134990000	131790000	20265	1516	19176	124705;124706;124707;124708;124709;124710;124711;124712;124713;124714	169039;169040;169041;169042;169043;169044;169045;169046;169047;169048;169049;169050;169051	169046			13	
GNVDISAPK	1	Unmodified	899.47125	0.47124585	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	5.44	2				2	2				1	2	1	2	27.407	22.116	2	1.5615E-05	18897	160511_QHF_FH_JSI9i_1	122.13	104.75			1.0363	1.1408	49.547	5	2	Median	0.83655	0.69858	NaN	1	1	Median	0.8861	1.0333	23.298	2	0	Median	1.154	1.1408	NaN	1	0	Median	2.3459	2.588	NaN	1	1	Median	423970000	206780000	217190000	205850000	100560000	105300000	208640000	101750000	106890000	8169500	4053800	4115700	1308400	421410	886950	20266	2286	19177	124715;124716;124717;124718;124719;124720	169052;169053;169054;169055;169056	169054			5	
GNVEADAFRK	1	Unmodified	1105.5516	0.55162144	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	1				By MS/MS	3	0			4										4	17.986	18.025	2;3	0.00058226	14541	160511_QHF_FH_JSI12i_3	67.08	55.858			0.67571	0.67679	2.425	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67571	0.67679	2.425	2	2	Median	216590000	141950000	74640000	0	0	0	0	0	0	0	0	0	216590000	141950000	74640000	20267	3648	19178	124721;124722;124723;124724	169057;169058;169059;169060	169060			4	
GNVFAVEAENR	0	Unmodified	1204.5836	0.58364985	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	37.712	36.811	2	6.4742E-05	31453	160511_QHF_FH_JSI11i_2	93.058	75.622			1.0097	1.0707	5.3121	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0377	1.0312	NaN	1	0	Median	0.98232	1.1117	NaN	1	1	Median	79580000	35608000	43972000	0	0	0	0	0	0	43412000	18683000	24729000	36168000	16925000	19243000	20268	4750	19179	124725;124726	169061;169062	169062			2	
GNVFKNK	2	Acetyl (K)	847.4552	0.45520186	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		23.624	14.071	2	0.023606	9743	160513_QHF_FH_JSI10Kac_4	74.415	57.488			1.3088	1.6016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3088	1.6016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12488000	7969300	4519000	0	0	0	8306100	3787100	4519000	4182200	4182200	0	0	0	0	20269	2129	19180	124727;124728	169063;169064;169065	169063	2227		3	
GNVFSSPTAAGTPNK	1	Unmodified	1446.7103	0.71030693	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.61	8	4				2	3			3	4	5	5	36.524	33.736	2	9.7819E-19	29652	160511_QHF_FH_JSI9i_1	215.72	197.41			0.94812	0.96156	12.771	13	11	Median	1.4198	1.152	24.542	3	2	Plateau	0.80366	0.96326	11.481	4	3	Median	1.0168	0.99862	8.8001	4	4	Median	0.96024	0.9889	6.95	2	2	Median	1409500000	702030000	707510000	290450000	132290000	158160000	390010000	211470000	178540000	389030000	202050000	186980000	340040000	156210000	183830000	20270	2233	19181	124729;124730;124731;124732;124733;124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745	169066;169067;169068;169069;169070;169071;169072;169073;169074;169075;169076;169077;169078;169079;169080;169081;169082;169083;169084	169076			19	
GNVGFVFTK	1	Unmodified	967.51272	0.51271674	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.34	4	4	4			3	4	4	4	5	8	7	7	58.528	52.548	2	6.2368E-08	44610	160511_QHF_FH_JSI12i_3	141.48	120.33			0.97198	0.99023	19.3	27	1	Median	1.2207	1.0325	8.1758	5	0	Median	0.86493	1.0124	24.335	8	0	Median	0.98668	0.94503	20.103	7	0	Median	0.86535	0.95593	20.759	7	1	Median	16032000000	7678000000	8353900000	2986100000	1291400000	1694700000	3530500000	1872600000	1657900000	4804400000	2313300000	2491000000	4711000000	2200700000	2510300000	20271	837	19182	124746;124747;124748;124749;124750;124751;124752;124753;124754;124755;124756;124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771;124772	169085;169086;169087;169088;169089;169090;169091;169092;169093;169094;169095;169096;169097;169098;169099;169100;169101;169102;169103;169104;169105;169106;169107;169108;169109;169110;169111;169112;169113;169114;169115;169116;169117;169118;169119;169120;169121;169122;169123;169124;169125;169126;169127;169128;169129;169130;169131;169132;169133;169134;169135;169136;169137;169138;169139;169140;169141;169142;169143;169144;169145	169140			60	
GNVGIGGSAVPPPPIK	1	Unmodified	1458.8195	0.81946344	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	57.011	56.355	2;3	1.0585E-05	51349	160511_QHF_FH_JSI12i_1	120.84	103.81			0.92477	0.94134	11.061	7	1	Median	1.202	0.97126	4.4241	2	0	Median	0.75523	0.88933	21.213	2	0	Median	0.91583	0.87483	10.214	2	1	Median	0.92477	0.96977	NaN	1	0	Median	419680000	208480000	211190000	120740000	55076000	65659000	100430000	56333000	44095000	119920000	52631000	67287000	78594000	44442000	34151000	20272	3291	19183	124773;124774;124775;124776;124777;124778;124779	169146;169147;169148;169149;169150;169151;169152;169153;169154	169150			8	
GNVGVVLFNFGK	1	Unmodified	1249.6819	0.68190733	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.47		3	8					4	7	6	5	6	5	84.943	79.81	2;3	4.5394E-93	69695	160511_QHF_FH_JSI9i_3	257.93	242.05			0.84033	0.86308	27.333	21	3	Median	1.0519	0.87942	31.103	6	0	Median	0.72074	0.84954	26.715	4	0	Median	0.85455	0.81862	30.514	6	2	Median	0.92615	0.92434	14.757	5	1	Median	5714300000	3078600000	2635600000	1400000000	685670000	714300000	1178600000	744920000	433670000	1913300000	1057500000	855790000	1222500000	590590000	631870000	20273	1402	19184	124780;124781;124782;124783;124784;124785;124786;124787;124788;124789;124790;124791;124792;124793;124794;124795;124796;124797;124798;124799;124800;124801	169155;169156;169157;169158;169159;169160;169161;169162;169163;169164;169165;169166;169167;169168;169169;169170;169171;169172;169173;169174;169175;169176;169177;169178;169179;169180;169181;169182;169183;169184;169185;169186;169187;169188;169189;169190;169191	169169			37	
GNVLVLSQHK	1	Unmodified	1093.6244	0.62439245	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	32.483	25.782	2;3	0.00026132	14141	160513_QHF_FH_JSI9Kac_6	91.584	76.917			0.92375	1.729	34.693	4	1	Linear	0.93622	0.8525	NaN	1	0	Median	0.71133	0.84847	NaN	1	0	Median	1.296	1.264	45.175	2	1	Median	NaN	NaN	NaN	0	0	Median	40653000	17041000	23611000	3386100	1684900	1701100	3371100	2084300	1286800	33895000	13272000	20623000	0	0	0	20274	2555	19185	124802;124803;124804;124805;124806;124807	169192;169193;169194;169195;169196;169197;169198;169199	169195			8	
GNVPSSELQIYTWMDATLK	1	Unmodified	2152.0511	0.051055878	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			89.755	89.672	2	0.0038401	81370	160511_QHF_FH_JSI10i_1	51.774	20.135			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6798400	0	6798400	0	0	0	6798400	0	6798400	0	0	0	0	0	0	20275	130	19186	124808	169200	169200			1	
GNVQVVIPFLTESYSSSQDPPEK	1	Unmodified	2520.2384	0.23839896	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.738	10	1	2							3	3	3	4	100.02	99.913	2;3	2.7325E-15	90795	160511_QHF_FH_JSI11i_1	103.58	96.187			0.99552	0.99755	16.942	10	3	Median	1.2963	1.0625	9.7804	2	1	Median	0.80715	0.87775	6.8108	3	1	Plateau	0.97272	0.93042	5.1613	2	0	Median	0.96849	1.0151	23.526	3	1	Plateau	809810000	391530000	418280000	89076000	32890000	56186000	267590000	142260000	125330000	191110000	90704000	100410000	262030000	125670000	136360000	20276	1208	19187	124809;124810;124811;124812;124813;124814;124815;124816;124817;124818;124819;124820;124821	169201;169202;169203;169204;169205;169206;169207;169208;169209;169210;169211;169212;169213;169214;169215;169216;169217;169218;169219;169220;169221;169222;169223;169224;169225;169226	169203			26	
GNWAHSGFPEIAFGR	0	Unmodified	1644.7797	0.77972389	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			74.619	73.169	3	0.00017718	60962	160511_QHF_FH_JSI10i_3	63.682	60.924			0.81936	0.86238	15.397	3	0	Median	0.92794	0.76816	16.362	2	0	Median	0.81884	0.91595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54524000	27039000	27485000	34384000	17582000	16802000	20141000	9457300	10683000	0	0	0	0	0	0	20277	1778	19188	124822;124823;124824	169227;169228;169229	169228			2	
GNWDEQFDK	1	Unmodified	1137.4727	0.47270242	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			2	2	1	2	38.423	36.312	2	2.4349E-23	32705	160511_QHF_FH_JSI10i_1	193.1	178.43			0.9587	1.0383	30.664	7	1	Median	1.1328	0.93246	72.907	2	1	Median	0.91105	1.0952	7.5346	2	0	Median	1.0218	0.99432	NaN	1	0	Median	0.95385	1.0247	2.1281	2	0	Median	2659200000	1280200000	1379000000	535440000	278840000	256610000	751910000	352370000	399540000	692550000	354820000	337730000	679340000	294170000	385170000	20278	1425	19189	124825;124826;124827;124828;124829;124830;124831	169230;169231;169232;169233;169234;169235;169236;169237;169238;169239;169240;169241;169242;169243;169244;169245;169246;169247;169248	169239			19	
GNWEQPQNQNQTQHK	1	Unmodified	1835.8299	0.82992156	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	11.889	11.724	2;3	1.0402E-41	9169	160511_QHF_FH_JSI11i_3	179.55	169.76			0.95415	0.9875	10.136	6	0	Median	1.3806	1.1747	NaN	1	0	Median	0.86577	1.0531	NaN	1	0	Median	1.0627	0.9875	2.1871	2	0	Median	0.8784	0.90052	1.0404	2	0	Median	749800000	373600000	376200000	49418000	19089000	30329000	90235000	47026000	43209000	409660000	197180000	212480000	200480000	110310000	90178000	20279	2505	19190	124832;124833;124834;124835;124836;124837;124838;124839;124840	169249;169250;169251;169252;169253;169254;169255;169256;169257;169258;169259;169260;169261	169251			13	
GNYMTFK	1	Unmodified	859.38982	0.38982441	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	31.348	30.547	2	0.0088278	25726	160511_QHF_FH_JSI11i_2	81.784	64.857			0.87216	0.97681	10.054	5	0	Median	1.2797	1.1191	NaN	1	0	Median	0.76316	0.92065	11.923	2	0	Median	0.93955	0.95075	NaN	1	0	Median	0.87216	0.97681	NaN	1	0	Median	731760000	366600000	365160000	125240000	54097000	71138000	174600000	92019000	82583000	269090000	129960000	139130000	162840000	90526000	72312000	20280	3634	19191	124841;124842;124843;124844;124845	169262;169263;169264;169265;169266;169267;169268	169265			7	
GNYMTFKK	2	Unmodified	987.48479	0.48478743	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			7							3	2	1	1	22.354	21.446	2;3	0.00070009	17273	160511_QHF_FH_JSI9i_3	80.165	65.959			0.73727	0.82494	112.5	7	4	Median	7.0679	5.7548	138.44	3	3	Plateau	0.59852	0.68031	27.261	2	0	Median	0.3964	0.38059	NaN	1	0	Median	2.4875	2.4978	NaN	1	1	Median	568170000	233860000	334310000	268860000	87148000	181710000	200650000	115110000	85541000	10081000	4757300	5323500	88580000	26842000	61738000	20281	3634	19192	124846;124847;124848;124849;124850;124851;124852	169269;169270;169271;169272;169273;169274	169272			5	
GNYMTFKK	2	Acetyl (K)	1029.4954	0.49535211	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		49.322	38.778	2	0.053103	21688	160513_QHF_FH_JSI11Kac_5	58.981	40.205			9.1976	9.0262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.1976	9.0262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9571500	1200200	8371300	0	0	0	0	0	0	9571500	1200200	8371300	0	0	0	20282	3634	19192	124853	169275	169275			1	
GNYQNLNQSVAHDWTSGLQR	0	Unmodified	2287.073	0.073005382	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.327	58.798	3	5.9744E-05	49229	160511_QHF_FH_JSI10i_3	66.76	58.266			0.59166	0.65868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59166	0.65868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20947000	15588000	5358700	0	0	0	20947000	15588000	5358700	0	0	0	0	0	0	20283	233	19193	124854	169276	169276			1	
GPAAAQGSAAAPAEPK	1	Unmodified	1392.6997	0.69974224	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.04	7				3					2	1	5	2	18.068	15.371	2;3	1.4802E-56	12965	160511_QHF_FH_JSI11i_1	197.38	155.04			0.85888	0.82992	32.215	9	3	Median	0.68897	0.56521	54.324	2	1	Median	0.68334	0.82236	NaN	1	0	Median	0.87332	0.83164	18.31	4	2	Median	0.95499	1.0203	28.386	2	0	Median	716690000	434140000	282550000	292400000	170550000	121840000	126030000	85307000	40727000	174660000	102100000	72561000	123590000	76177000	47418000	20284	5299	19194	124855;124856;124857;124858;124859;124860;124861;124862;124863;124864	169277;169278;169279;169280;169281;169282;169283;169284;169285;169286;169287;169288;169289	169279			13	
GPAAPPPTPVKPPR	1	Unmodified	1380.7878	0.78776939	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			29.207	27.882	3	0.0078102	23117	160511_QHF_FH_JSI10i_3	43.761	34.323			1.0126	1.1252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0126	1.1252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20335000	9482300	10853000	0	0	0	20335000	9482300	10853000	0	0	0	0	0	0	20285	3937	19195	124865;124866	169290;169291	169291			2	
GPAASTQEK	1	Unmodified	887.43486	0.43486035	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	3.6822	3.457	2	0.00055425	1644	160511_QHF_FH_JSI11i_1	78.516	50.991			0.99302	1.1586	7.5273	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99302	1.1638	NaN	1	0	Median	1.0859	1.0193	NaN	1	0	Median	1.1239	1.1586	NaN	1	0	Median	230620000	108370000	122250000	0	0	0	88065000	42326000	45740000	71456000	29978000	41478000	71099000	36068000	35031000	20286	2605	19196	124867;124868;124869	169292;169293;169294;169295;169296;169297	169293			6	
GPADSLSTAAGAAELSAEGAGK	1	Unmodified	1929.928	0.92796385	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									3		1	1	63.479	62.733	2;3	1.6742E-27	55777	160511_QHF_FH_JSI9i_1	197.47	175.6			0.9508	0.84944	12.838	2	2	Median	0.94173	0.77573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95996	0.93016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57275000	24349000	32926000	22199000	9408300	12791000	0	0	0	35076000	14941000	20135000	0	0	0	20287	3283	19197	124870;124871;124872;124873;124874	169298;169299;169300;169301;169302;169303	169301			6	
GPAEDMSSK	1	Unmodified	920.39095	0.39094662	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.8015	7.1591	2	0.046856	4725	160511_QHF_FH_JSI9i_1	44.863	30.451			0.86168	0.71822	NaN	1	1	Median	0.86168	0.71822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77771000	45659000	32112000	77771000	45659000	32112000	0	0	0	0	0	0	0	0	0	20288	2485	19198	124875	169304	169304			1	
GPAEESSSWR	0	Unmodified	1104.4836	0.48360145	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									2	1	2	15.27	14.701	2	0.00015741	11793	160511_QHF_FH_JSI12i_2	83.206	36.78			0.83791	0.97074	11.914	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77338	0.92053	14.649	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92125	1.0029	11.741	2	0	Median	129930000	62442000	67488000	0	0	0	61309000	30496000	30813000	0	0	0	68621000	31946000	36675000	20289	2502	19199	124876;124877;124878;124879;124880	169305;169306;169307;169308	169305			4	
GPAEKGK	2	Acetyl (K)	727.38645	0.38645359	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	5.1507	-2.1222	2	0.0047027	1703	160513_QHF_FH_JSI11Kac_3	101.64	14.777			0.50634	0.58239	174.53	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.056853	0.067817	NaN	1	1	Median	0.037591	0.036671	NaN	1	1	Median	0.89131	0.97751	NaN	1	0	Median	73726000	49899000	23828000	0	0	0	24837000	21488000	3348900	9246900	8910800	336120	39642000	19500000	20143000	20290	3521	19200	124881;124882;124883	169309;169310;169311	169309	2879		3	
GPAETEATTD	0	Unmodified	990.41418	0.41418448	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.33	4.71	2			1							1	2		9.1521	6.5343	2	0.00032096	6244	160511_QHF_FH_JSI11i_1	78.178	73.444			1.353	1.2892	11.277	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97879	1.1438	NaN	1	0	Median	1.4314	1.3592	7.4742	2	0	Median	NaN	NaN	NaN	0	0	Median	144160000	65194000	78964000	0	0	0	68648000	36817000	31831000	75509000	28376000	47133000	0	0	0	20291	2306	19201	124884;124885;124886	169312;169313;169314	169312			3	
GPAFNMASPESDFGINLK	1	Unmodified	1893.8931	0.89309867	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.714	8	8	3							1	6	5	7	88.378	87.959	2;3	6.3189E-75	79772	160511_QHF_FH_JSI10i_1	212.59	188.29			0.91165	0.90268	12.88	16	6	Median	0.92282	0.79961	NaN	1	0	Median	0.72513	0.88707	5.4654	5	3	Median	0.90461	0.92832	2.6149	5	1	Plateau	0.92508	0.96769	23.096	5	2	Median	644290000	328930000	315370000	58338000	30630000	27708000	190130000	107020000	83115000	169930000	81571000	88360000	225890000	109710000	116180000	20292	2286	19202	124887;124888;124889;124890;124891;124892;124893;124894;124895;124896;124897;124898;124899;124900;124901;124902;124903;124904;124905	169315;169316;169317;169318;169319;169320;169321;169322;169323;169324;169325;169326;169327;169328;169329;169330;169331;169332;169333;169334;169335;169336;169337;169338;169339;169340;169341;169342	169328			27	
GPAFVNPLIPESPEEEELFR	0	Unmodified	2269.1267	0.12666366	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	101.31	101.18	3	0.0042881	91777	160511_QHF_FH_JSI12i_1	27.523	13.214			1.1515	1.1939	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1515	1.1939	NaN	1	1	Median	110610000	49618000	60990000	0	0	0	0	0	0	0	0	0	110610000	49618000	60990000	20293	5552	19203	124906	169343	169343			1	
GPAFVNPLIPESPEEEELFRQGELNK	1	Unmodified	2938.4713	0.47125244	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	3	2	98.02	97.923	3	1.8623E-06	86741	160511_QHF_FH_JSI10i_2	61.89	56.346			1.0024	1.0409	14.979	7	4	Median	1.1142	0.971	17.729	2	1	Median	0.90645	1.0705	14.327	2	2	Median	0.95532	0.90338	20.043	2	1	Median	1.1108	1.1099	NaN	1	0	Median	147060000	67723000	79341000	31209000	14231000	16978000	31885000	16619000	15266000	41337000	21332000	20005000	42632000	15541000	27091000	20294	5552	19204	124907;124908;124909;124910;124911;124912;124913;124914;124915	169344;169345;169346;169347;169348;169349;169350;169351;169352;169353;169354	169352			11	
GPAGDATVASEK	1	Unmodified	1101.5302	0.5302173	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	11.602	9.8227	2	2.0533E-16	8257	160511_QHF_FH_JSI12i_1	166.69	128.96			0.789	0.81084	8.4693	5	0	Median	1.1528	0.95622	NaN	1	0	Median	0.74996	0.86762	NaN	1	0	Median	0.80681	0.78851	3.949	2	0	Median	0.789	0.81034	NaN	1	0	Median	676840000	376640000	300200000	201000000	99818000	101180000	166190000	97714000	68474000	175600000	102990000	72613000	134050000	76120000	57925000	20295	2705	19205	124916;124917;124918;124919;124920	169355;169356;169357;169358;169359;169360;169361;169362;169363	169357			9	
GPAGLGPR	0	Unmodified	723.40277	0.40277236	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			12.063	11.372	2	0.0041979	8903	160511_QHF_FH_JSI10i_3	69.432	26.386			1.5056	1.7619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5056	1.7619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	222510000	111470000	111040000	0	0	0	222510000	111470000	111040000	0	0	0	0	0	0	20296	2217	19206	124921	169364	169364			1	
GPAGNWGPPGDYPDR	0	Unmodified	1554.6852	0.68515481	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	45.913	45.064	2	4.2136E-05	41081	160511_QHF_FH_JSI12i_1	80.014	65.595			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20297	1628	19207	124922;124923;124924	169365;169366;169367	169366			3	
GPALANGFPSAHEALK	1	Unmodified	1578.8154	0.8154407	3364	Q86WR7	PROSER2	Proline and serine-rich protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.284	48.043	3	5.8162E-06	41131	160511_QHF_FH_JSI12i_3	109.07	96.514			1.3057	1.3194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3057	1.3194	NaN	1	0	Median	84514000	29708000	54805000	0	0	0	0	0	0	0	0	0	84514000	29708000	54805000	20298	3364	19208	124925	169368;169369	169369			2	
GPALDIK	1	Unmodified	712.41194	0.41194006	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.386	24.824	2	0.020074	21703	160511_QHF_FH_JSI10i_1	57.335	20.36			1.0316	1.0309	10.713	4	0	Median	1.1302	0.9412	NaN	1	0	Median	0.99685	1.155	NaN	1	0	Median	0.96615	0.95	NaN	1	0	Median	1.0676	1.1187	NaN	1	0	Median	667880000	406110000	261770000	117150000	53016000	64132000	206690000	136140000	70558000	182360000	112920000	69440000	161680000	104040000	57636000	20299	2286	19209	124926;124927;124928;124929	169370;169371	169370			2	
GPAPGSKPVQFMDFEGK	2	Unmodified	1790.8662	0.86615564	3769	Q8WUX1	SLC38A5	Sodium-coupled neutral amino acid transporter 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	57.085	56.488	3	2.158E-06	47261	160511_QHF_FH_JSI10i_3	101.53	90.712			0.78619	0.73521	18.792	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75289	0.8739	NaN	1	0	Median	0.78619	0.73521	NaN	1	0	Median	0.58717	0.60036	NaN	1	1	Median	276700000	158370000	118330000	0	0	0	61902000	34528000	27375000	146860000	83397000	63466000	67932000	40447000	27486000	20300	3769	19210	124930;124931;124932	169372;169373;169374	169373			3	
GPAPQDQAGPGGAPR	0	Unmodified	1374.664	0.66402543	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.513	13.544	2	0.0094449	10866	160511_QHF_FH_JSI9i_1	46.592	31.926			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20301	751	19211	124933	169375	169375			1	
GPASTPTYSPAPTQPAPR	0	Unmodified	1794.8901	0.89006221	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		33.742	33.129	3	0.043429	29071	160511_QHF_FH_JSI9i_1	36.112	24.469			0.82873	0.97727	26.115	3	0	Plateau	1.7361	1.4195	NaN	1	0	Median	0.8238	0.97727	NaN	1	0	Median	0.88083	0.8584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112970000	59180000	53788000	24245000	9583100	14662000	45385000	30248000	15137000	43338000	19350000	23989000	0	0	0	20302	3094	19212	124934;124935;124936	169376	169376			0	
GPASVPSVGK	1	Unmodified	897.49198	0.4919813	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.881	21.354	2	0.00046399	18245	160511_QHF_FH_JSI11i_1	84.213	56.959			0.98126	1.0213	6.7264	4	0	Median	1.3306	1.074	NaN	1	0	Median	0.82635	0.98173	NaN	1	0	Median	1.0827	1.0624	NaN	1	0	Median	0.8893	0.93213	NaN	1	0	Median	780500000	413440000	367050000	179730000	77439000	102300000	177230000	105290000	71943000	223150000	122070000	101080000	200380000	108640000	91740000	20303	2409	19213	124937;124938;124939;124940	169377;169378;169379;169380	169377			4	
GPATAEVPYPDDLVGFK	1	Unmodified	1774.8778	0.87776618	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		80.373	80.024	2	0.0086271	72883	160511_QHF_FH_JSI11i_1	53.252	39.346			0.47728	0.46406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47728	0.46406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13566000	9810800	3755000	0	0	0	0	0	0	13566000	9810800	3755000	0	0	0	20304	2677	19214	124941	169381	169381			1	
GPATVEDLPSAFEEK	1	Unmodified	1588.7621	0.76206772	217	O14908	GIPC1	PDZ domain-containing protein GIPC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			65.572	64.88	2	1.3224E-06	58765	160511_QHF_FH_JSI10i_1	128.67	95.586			0.65481	0.64162	1.7601	2	2	Median	0.7817	0.63368	NaN	1	1	Median	0.54851	0.64965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104660000	69279000	35378000	48865000	33950000	14915000	55792000	35328000	20464000	0	0	0	0	0	0	20305	217	19215	124942;124943	169382;169383	169382			2	
GPAVGIDLGTTYSCVGVFQHGK	1	Unmodified	2262.1103	0.11030209	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.35	3.2		7	9						1	4	5	4	4	78.14	77.175	2;3;4	7.4432E-103	67144	160511_QHF_FH_JSI12i_3	260.31	256.2			0.91592	0.95197	19.395	16	3	Median	1.1014	0.95375	22.379	3	1	Plateau	0.80639	0.99164	13.012	5	1	Median	0.88977	0.83676	7.8055	4	1	Median	1.1365	1.1812	2.8337	4	0	Median	6647200000	3378300000	3268900000	239810000	113830000	125980000	884020000	503330000	380690000	1811800000	978700000	833140000	3711500000	1782500000	1929100000	20306	985	19216	124944;124945;124946;124947;124948;124949;124950;124951;124952;124953;124954;124955;124956;124957;124958;124959;124960	169384;169385;169386;169387;169388;169389;169390;169391;169392;169393;169394;169395;169396;169397;169398;169399;169400;169401;169402;169403;169404;169405;169406;169407;169408;169409;169410;169411;169412;169413;169414;169415;169416;169417;169418;169419	169414			36	
GPAYGLSR	0	Unmodified	819.4239	0.42390173	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		4	5	3	5	19.555	15.948	2	1.4492E-05	9908	160513_QHF_FH_JSI11Kac_5	132.09	85.723			0.89632	0.8866	6.0838	17	0	Median	1.0701	0.88255	6.7268	4	0	Median	0.73259	0.85117	2.3149	5	0	Median	0.89632	0.87961	1.8908	3	0	Median	0.92927	0.96881	4.6908	5	0	Median	6663300000	3555400000	3108000000	1320100000	641550000	678550000	1655000000	985650000	669330000	1474800000	777680000	697090000	2213500000	1150500000	1063000000	20307	1470	19217	124961;124962;124963;124964;124965;124966;124967;124968;124969;124970;124971;124972;124973;124974;124975;124976;124977	169420;169421;169422;169423;169424;169425;169426;169427;169428;169429;169430;169431;169432;169433;169434;169435;169436;169437	169433			18	
GPCIIYNEDNGIIK	1	Unmodified	1604.7868	0.78684269	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.844	60.202	2	0.00012687	54570	160511_QHF_FH_JSI11i_1	100.88	82.133			1.4062	1.2613	20.243	4	1	Median	1.6858	1.3598	NaN	1	1	Median	0.98712	1.17	NaN	1	0	Median	1.173	1.1398	NaN	1	0	Median	1.7159	1.7721	NaN	1	0	Median	263040000	122030000	141010000	38762000	16108000	22653000	62801000	32434000	30367000	87765000	44028000	43736000	73714000	29459000	44255000	20308	1457	19218	124978;124979;124980;124981	169438;169439;169440	169438			3	
GPDALTLLEYTETR	0	Unmodified	1577.7937	0.7937022	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	3	1	88.492	87.958	2	2.0588E-07	76004	160511_QHF_FH_JSI12i_2	140.24	123.57			0.8378	0.93742	22.432	6	3	Median	1.0855	0.94755	NaN	1	1	Median	0.75787	0.9274	NaN	1	0	Median	0.69894	0.67812	25.931	3	2	Median	0.92617	1.0037	NaN	1	0	Median	159120000	86332000	72785000	30324000	13601000	16723000	31954000	15984000	15970000	72045000	43878000	28167000	24795000	12869000	11926000	20309	4136	19219	124982;124983;124984;124985;124986;124987;124988	169441;169442;169443;169444;169445;169446;169447;169448	169444			8	
GPDEAKIK	2	Acetyl (K)	898.476	0.47599688	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					2	1	1	20.718	13.395	2	0.00094466	8569	160513_QHF_FH_JSI10Kac_3	112.41	73.605			0.84184	0.87306	168.49	4	2	Median	NaN	NaN	NaN	0	0	Median	0.27143	0.3219	273.91	2	2	Median	0.98285	0.96131	NaN	1	0	Median	0.72107	0.79291	NaN	1	0	Median	56319000	33410000	22909000	0	0	0	21421000	14170000	7251300	11565000	5801200	5763800	23333000	13438000	9894400	20310	423;326	19220	124989;124990;124991;124992	169449;169450;169451;169452	169451	167		4	
GPDETLR	0	Unmodified	786.38718	0.38718187	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.75	6.02	3					3	2			1	1	3	3	10.91	6.1376	2	0.0056711	4952	160513_QHF_FH_JSI11Kac_4	94.006	34.366			1.0571	1.0645	5.7382	8	0	Median	1.2847	1.0173	NaN	1	0	Median	0.8918	1.0572	NaN	1	0	Median	1.1003	1.0719	3.1315	3	0	Plateau	0.91021	0.97473	9.438	3	0	Plateau	3926500000	1929200000	1997300000	1009300000	452400000	556870000	12666000	7077800	5588500	1324800000	630180000	694600000	1579800000	839590000	740210000	20311	1206	19221	124993;124994;124995;124996;124997;124998;124999;125000	169453;169454;169455;169456	169455			4	
GPDGLTAFEATDNQAIK	1	Unmodified	1746.8424	0.84244331	1900	P58546	MTPN	Myotrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				2	5	5	2	64.799	61.232	2;3	1.725E-236	55417	160511_QHF_FH_JSI12i_1	340.52	300.6			0.99721	1.0545	12.062	12	0	Median	1.2525	1.0287	14.971	2	0	Median	0.8879	1.0529	8.7994	4	0	Median	1.1127	1.0696	17.404	4	0	Median	0.97828	1.0246	12.978	2	0	Median	4718100000	2280300000	2437800000	1189000000	507150000	681870000	1183900000	637000000	546910000	1311000000	588420000	722540000	1034200000	547710000	486480000	20312	1900	19222	125001;125002;125003;125004;125005;125006;125007;125008;125009;125010;125011;125012;125013;125014	169457;169458;169459;169460;169461;169462;169463;169464;169465;169466;169467;169468;169469;169470;169471;169472;169473;169474;169475;169476;169477;169478;169479;169480;169481	169462			25	
GPDNSMGFGAER	0	Unmodified	1236.5193	0.51933503	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.7	26.349	2	0.00018154	23148	160511_QHF_FH_JSI11i_1	81.676	66.526			0.86407	0.95128	14.903	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86407	1.0098	NaN	1	0	Median	0.78271	0.76111	NaN	1	0	Median	0.88801	0.95128	NaN	1	0	Median	284950000	149270000	135690000	0	0	0	87708000	47161000	40547000	89979000	46144000	43835000	107270000	55961000	51307000	20313	543	19223	125015;125016;125017	169482;169483;169484;169485	169482			4	
GPDNSMGFGAERK	1	Unmodified	1364.6143	0.61429805	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.17	0.373		5	1							2	2	2		19.473	18.863	2;3	0.00024853	15963	160511_QHF_FH_JSI9i_2	77.64	59.329			1.2702	1.2022	28.627	6	1	Median	1.3168	1.1435	0.49387	2	0	Median	1.2024	1.4792	10.711	2	0	Median	0.95357	0.93085	42.76	2	1	Median	NaN	NaN	NaN	0	0	Median	408920000	186520000	222400000	164480000	71897000	92586000	152250000	70340000	81910000	92191000	44283000	47908000	0	0	0	20314	543	19224	125018;125019;125020;125021;125022;125023	169486;169487;169488;169489;169490;169491;169492	169487			7	
GPDWHLK	1	Unmodified	851.42899	0.42898711	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	24.291	24.279	3	0.0022412	20128	160511_QHF_FH_JSI12i_3	81.297	53.19			1.0537	1.0272	1.3074	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0958	1.0177	NaN	1	1	Median	1.0133	1.0367	NaN	1	1	Median	259450000	108410000	151040000	0	0	0	0	0	0	111620000	43256000	68359000	147840000	65156000	82682000	20315	2286	19225	125024;125025;125026;125027;125028	169493;169494;169495;169496;169497	169496			5	
GPDWHLKMPK	2	Acetyl (K)	1249.6278	0.62776327	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.184	54.498	3	0.029639	29499	160513_QHF_FH_JSI11Kac_6	39.917	30.484			0.22824	0.2244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22824	0.2244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6693700	5733300	960420	0	0	0	0	0	0	6693700	5733300	960420	0	0	0	20316	2286	19226	125029	169498	169498			1	
GPDWILGEIK	1	Unmodified	1126.6023	0.60226003	1687	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	80.144	79.44	2	7.2797E-05	70645	160511_QHF_FH_JSI10i_2	88.681	78.213			0.981	0.98616	6.6475	5	0	Median	1.1709	1.0231	NaN	1	0	Median	0.74594	0.91732	NaN	1	0	Median	0.98406	0.9622	3.4783	2	0	Median	0.96188	1.0825	NaN	1	0	Median	316480000	163520000	152960000	31443000	14855000	16588000	77215000	43327000	33887000	138840000	72662000	66180000	68979000	32673000	36307000	20317	1687	19227	125030;125031;125032;125033;125034	169499;169500;169501;169502;169503;169504;169505;169506	169506			8	
GPEADIK	1	Unmodified	728.37047	0.37046918	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.9058	9.5392	2	0.027109	7445	160511_QHF_FH_JSI12i_1	53.754	13.656			0.69177	0.72672	17.454	4	0	Linear	1.0564	0.85048	NaN	1	0	Median	0.66904	0.77927	NaN	1	0	Median	0.86714	0.84154	NaN	1	0	Median	1.0961	1.1568	NaN	1	0	Median	1033300000	546170000	487090000	239490000	108890000	130590000	306030000	188040000	117990000	271020000	140590000	130430000	216710000	108640000	108070000	20318	2286	19228	125035;125036;125037;125038	169507;169508	169507			2	
GPEAGYVATPIAMVQAAMTLLSDASHLPK	1	Unmodified	2938.4933	0.49325021	3607	Q8NBX0	SCCPDH	Saccharopine dehydrogenase-like oxidoreductase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	104.63	104.63	3	2.2715E-12	91244	160511_QHF_FH_JSI12i_3	83.881	77.72			1.0418	1.1332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0418	1.1332	NaN	1	0	Median	8909800	4072600	4837200	0	0	0	0	0	0	0	0	0	8909800	4072600	4837200	20319	3607	19229	125039	169509;169510	169509			2	
GPEEINEELMK	1	Unmodified	1287.6017	0.60166768	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	49.852	46.235	2	5.7411E-08	41741	160511_QHF_FH_JSI12i_1	126.03	105.19			1.1239	1.1662	15.488	6	0	Median	1.3325	1.1023	NaN	1	0	Median	0.98057	1.1662	3.5759	2	0	Median	1.1165	1.0736	29.68	2	0	Median	1.2631	1.3197	NaN	1	0	Median	2552100000	1093700000	1458300000	560490000	223400000	337100000	707640000	321450000	386190000	703170000	304570000	398610000	580780000	244330000	336450000	20320	1604	19230	125040;125041;125042;125043;125044;125045	169511;169512;169513;169514;169515;169516	169513			6	
GPEFVRK	1	Unmodified	831.46029	0.46028724	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			11.062	10.389	2	0.05736	7965	160511_QHF_FH_JSI10i_3	41.652	17.68			0.88122	0.84836	19.66	2	0	Median	1.2211	0.97488	NaN	1	0	Median	0.63595	0.73825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	278520000	152140000	126380000	159640000	76975000	82661000	118880000	75165000	43718000	0	0	0	0	0	0	20321	4521	19231	125046;125047	169517	169517			1	
GPEGQGLPEVETREDEEQNVK	1	Unmodified	2339.0877	0.087711973	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	38.969	38.23	3	5.2472E-07	34237	160511_QHF_FH_JSI10i_1	83.776	68.184			1.0317	1.1363	28.736	5	3	Median	1.3333	1.0788	43.677	2	2	Median	0.96473	1.1363	NaN	1	0	Median	1.0317	0.99863	NaN	1	1	Median	1.498	1.6068	NaN	1	0	Median	154190000	78055000	76133000	41246000	15390000	25856000	37745000	21667000	16078000	35174000	21572000	13601000	40023000	19425000	20598000	20322	2866	19232	125048;125049;125050;125051;125052	169518;169519;169520;169521;169522;169523;169524;169525	169522			8	
GPEGQSQAPASTSASTR	0	Unmodified	1630.7547	0.75469094	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	9.966	9.5039	2	3.5617E-06	7354	160511_QHF_FH_JSI12i_1	143.98	126.95			1.3444	1.3226	12.909	5	2	Median	1.6063	1.3695	14.509	2	2	Median	0.93975	1.0687	NaN	1	0	Median	1.3444	1.3226	NaN	1	0	Median	1.3123	1.3551	NaN	1	0	Median	150620000	71810000	78808000	57086000	27091000	29995000	24497000	13394000	11103000	27462000	12987000	14475000	41572000	18337000	23235000	20323	2309	19233	125053;125054;125055;125056;125057	169526;169527;169528;169529;169530;169531;169532;169533	169528			8	
GPEGSLLPSPPPSQER	0	Unmodified	1646.8264	0.82639932	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.676	48.261	2	0.0089232	43690	160511_QHF_FH_JSI11i_1	46.592	23.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20324	681	19234	125058	169534	169534			1	
GPEHSNIQHFVEK	1	Unmodified	1520.7372	0.73719038	1538	P42568	MLLT3	Protein AF-9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	22.143	22.133	3	6.1647E-06	18140	160511_QHF_FH_JSI12i_3	83.692	48.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20325	1538	19235	125059	169535	169535			1	
GPEIDIK	1	Unmodified	770.41742	0.41741937	2286;3405	Q09666;Q8IVF2	AHNAK;AHNAK2	Neuroblast differentiation-associated protein AHNAK;Protein AHNAK2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.258	26.677	2	0.015369	23661	160511_QHF_FH_JSI10i_1	64.757	17.014			0.959	0.95641	17.568	4	0	Median	0.90289	0.75458	NaN	1	0	Median	0.76755	0.8879	NaN	1	0	Median	1.1499	1.1262	NaN	1	0	Median	1.0186	1.0302	NaN	1	0	Median	635720000	315320000	320400000	147410000	65458000	81957000	165870000	83362000	82509000	140390000	63780000	76610000	182040000	102720000	79323000	20326	2286;3405	19236	125060;125061;125062;125063	169536;169537;169538;169539	169538			4	
GPELDVK	1	Unmodified	756.40177	0.4017693	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.45	18.946	2	0.034652	16379	160511_QHF_FH_JSI12i_1	50.025	0			0.94277	0.90295	8.4632	4	0	Median	1.1311	0.92296	NaN	1	0	Median	0.72651	0.84279	NaN	1	0	Median	1.0701	1.0274	NaN	1	0	Median	0.8306	0.88337	NaN	1	0	Median	2208000000	1145100000	1062900000	131390000	57303000	74086000	150710000	89572000	61134000	964380000	484080000	480300000	961560000	514160000	447390000	20327	2286	19237	125064;125065;125066;125067	169540;169541;169542;169543	169542			4	
GPELLNMYVGESER	0	Unmodified	1592.7505	0.75045718	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	69.611	68.663	2	0.00091657	59052	160511_QHF_FH_JSI12i_2	84.506	60.124			0.89118	0.94559	7.4096	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96939	0.99646	NaN	1	1	Median	0.81928	0.89733	NaN	1	1	Median	71820000	37033000	34786000	0	0	0	0	0	0	34677000	16341000	18336000	37143000	20693000	16450000	20328	285	19238	125068;125069	169544;169545	169544			2	
GPELLTMWFGESEANVR	0	Oxidation (M)	1950.9146	0.9145624	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.65		8	5						2	2	2	6	5	100.46	99.724	2;3	1.219E-97	86880	160511_QHF_FH_JSI12i_2	259.23	234.98			1.0303	1.047	6.9414	14	2	Median	1.2175	1.0471	6.0832	2	0	Median	0.84121	1.0246	16.373	2	0	Median	1.0436	1.0135	6.7471	6	2	Median	0.99226	1.0524	3.1035	4	0	Median	3405600000	1747800000	1657800000	523040000	252630000	270410000	473070000	257940000	215130000	1238900000	608200000	630720000	1170500000	629000000	541540000	20329	1846	19239	125070;125071;125072;125073;125074;125075;125076;125077;125078;125079;125080;125081;125082;125083;125084	169546;169547;169548;169549;169550;169551;169552;169553;169554;169555;169556;169557;169558;169559;169560;169561;169562;169563;169564;169565;169566	169550		1524	21	
GPELLTMWFGESEANVR	0	Unmodified	1934.9196	0.91964777	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.53	101.45	3	0.0029542	89276	160511_QHF_FH_JSI9i_2	60.489	55.487			1.1504	1.0022	NaN	1	0	Median	1.1504	1.0022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31659000	16569000	15090000	31659000	16569000	15090000	0	0	0	0	0	0	0	0	0	20330	1846	19239	125085	169567	169567			0	
GPELPLVPVK	1	Unmodified	1047.6328	0.63283187	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	68.287	65.652	2	8.8759E-05	59498	160511_QHF_FH_JSI10i_1	87.476	74.488			1.0483	1.0269	9.0655	5	0	Median	1.056	0.86091	NaN	1	0	Median	0.86771	1.0269	NaN	1	0	Median	1.0821	1.0279	6.3379	2	0	Median	1.0043	1.067	NaN	1	0	Median	222740000	111230000	111510000	42999000	22371000	20628000	45733000	22430000	23303000	73961000	34654000	39307000	60051000	31776000	28274000	20331	4029	19240	125086;125087;125088;125089;125090	169568;169569;169570;169571;169572;169573;169574;169575;169576	169572			9	
GPEQTADDADDAAGHK	1	Unmodified	1596.6652	0.66520723	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	9.9631	9.5826	3	0.044092	7219	160511_QHF_FH_JSI9i_1	37.477	18.154			0.99175	0.97615	10.768	4	0	Median	1.3094	1.0871	NaN	1	0	Median	0.72942	0.84671	NaN	1	0	Median	1.085	1.0164	NaN	1	0	Median	0.90656	0.93754	NaN	1	0	Median	278960000	124870000	154090000	57060000	21585000	35474000	70974000	31430000	39544000	70836000	28332000	42504000	80092000	43527000	36566000	20332	3497	19241	125091;125092;125093;125094	169577;169578	169578			0	
GPEQTSGQTAK	1	Unmodified	1102.5255	0.52546627	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		4.8055	4.6363	2	0.00049527	2490	160511_QHF_FH_JSI10i_1	78.488	50.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20333	3653	19242	125095;125096	169579;169580	169580			2	
GPESESEDHR	0	Unmodified	1141.4636	0.46359429	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.15	0.357	17	3								6	5	4	5	1.9651	1.6398	2;3	4.9103E-14	1049	160511_QHF_FH_JSI10i_1	159.37	143.17			1.2626	1.0866	34.907	19	0	Median	1.1351	0.99697	7.6493	6	0	Median	1.824	2.154	23.991	4	0	Median	1.3202	1.2933	13.64	4	0	Median	0.9319	0.9658	32.629	5	0	Median	784530000	345310000	439220000	48176000	22333000	25843000	223410000	80595000	142820000	230450000	107650000	122810000	282490000	134740000	147750000	20334	2094	19243	125097;125098;125099;125100;125101;125102;125103;125104;125105;125106;125107;125108;125109;125110;125111;125112;125113;125114;125115;125116	169581;169582;169583;169584;169585;169586;169587;169588;169589;169590;169591;169592;169593;169594	169591			14	
GPESESEDHRASGEVR	0	Unmodified	1740.7663	0.76631825	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	6.8293	6.5636	3	1.0752E-05	4698	160511_QHF_FH_JSI10i_2	85.734	80.843			0.99965	1.0342	7.2411	6	0	Median	1.3337	1.1496	NaN	1	0	Median	0.82495	1.0218	NaN	1	0	Median	1.0348	0.99216	7.5776	2	0	Median	0.9332	1.0153	7.1608	2	0	Median	279790000	135330000	144460000	44965000	18857000	26108000	94613000	51377000	43236000	71301000	33337000	37963000	68910000	31761000	37149000	20335	2094	19244	125117;125118;125119;125120;125121;125122	169595;169596;169597;169598;169599;169600	169598			6	
GPEVDIEGPEGK	1	Unmodified	1225.5826	0.5826468	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.476	34.872	2	4.6142E-05	31193	160511_QHF_FH_JSI11i_1	118.28	96.831			0.94093	0.8466	12.413	4	0	Median	1.0143	0.84529	NaN	1	0	Median	0.68468	0.82066	NaN	1	0	Median	0.87577	0.84792	NaN	1	0	Median	1.0109	1.0721	NaN	1	0	Median	965500000	517430000	448080000	212560000	105390000	107160000	266030000	162110000	103910000	278980000	147510000	131470000	207940000	102410000	105530000	20336	2286	19245	125123;125124;125125;125126	169601;169602;169603;169604;169605;169606	169601			6	
GPEVDIR	0	Unmodified	784.40792	0.40791731	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	19.546	19.042	2	0.027261	16590	160511_QHF_FH_JSI12i_1	53.679	23.011			1.1506	1.1301	16.7	4	0	Median	1.2706	1.0461	NaN	1	0	Median	1.0419	1.2207	NaN	1	0	Median	1.2814	1.2416	NaN	1	0	Median	0.82576	0.86704	NaN	1	0	Median	363480000	180520000	182960000	84823000	41378000	43445000	122350000	61580000	60771000	78909000	31471000	47438000	77400000	46093000	31307000	20337	2286	19246	125127;125128;125129;125130	169607;169608	169607			2	
GPEVDIRDPK	1	Unmodified	1124.5826	0.58258722	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	1.4	0.49	3	2								1	2	1	1	23.687	23.117	3	0.055805	19961	160511_QHF_FH_JSI11i_1	19.659	12.999			0.83219	0.90935	7.4579	5	0	Median	1.0872	0.90935	NaN	1	0	Median	0.78151	0.93698	4.4419	2	0	Median	0.962	0.9457	NaN	1	0	Median	0.77875	0.79773	NaN	1	0	Median	257630000	130930000	126700000	62528000	30255000	32273000	119140000	65900000	53244000	44699000	16486000	28213000	31260000	18292000	12967000	20338	2286	19247	125131;125132;125133;125134;125135	169609	169609			1	
GPEVDLK	1	Unmodified	756.40177	0.4017693	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				3	3	3	2	21.085	19.222	2	0.0064099	11538	160513_QHF_FH_JSI11Kac_3	91.9	0			0.83818	0.90807	14.707	11	0	Median	1.1887	0.94955	18.534	3	0	Plateau	0.81185	0.96682	21.409	3	0	Median	0.99935	0.99011	6.3376	3	0	Median	0.81897	0.86426	3.0929	2	0	Median	5086100000	2550900000	2535300000	1329500000	611150000	718370000	1140100000	612630000	527450000	1347600000	660820000	686800000	1268900000	666260000	602620000	20339	2286	19248	125136;125137;125138;125139;125140;125141;125142;125143;125144;125145;125146	169610;169611;169612;169613;169614;169615;169616;169617;169618;169619;169620;169621;169622	169616			13	
GPEVDVSGPK	1	Unmodified	983.49238	0.49237523	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	24.233	21.199	2	9.427E-06	18126	160511_QHF_FH_JSI9i_1	105.4	91.4			0.93695	0.87908	8.1667	6	0	Linear	1.0738	0.87335	NaN	1	0	Median	0.75103	0.89564	NaN	1	0	Median	0.96016	0.92803	10.633	2	0	Median	0.92581	0.98528	10.009	2	0	Median	1000700000	499650000	501100000	271650000	131490000	140170000	225970000	124820000	101150000	287980000	138550000	149430000	215140000	104780000	110350000	20340	2286	19249	125147;125148;125149;125150;125151;125152	169623;169624;169625;169626;169627;169628;169629;169630;169631;169632	169632			10	
GPFIAIFASDPHIIIK	1	Unmodified	1737.9818	0.98177775	5398	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	100.73	100.61	3	1.6407E-05	81562	160511_QHF_FH_JSI9i_3	101.36	90.087			1.4217	1.4689	52.072	3	3	Median	1.2552	1.0332	NaN	1	1	Median	2.5143	2.8791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4217	1.4689	NaN	1	1	Median	183730000	62052000	121670000	35539000	18963000	16577000	49277000	15858000	33419000	0	0	0	98910000	27231000	71679000	20341	5398	19250	125153;125154;125155;125156	169633;169634;169635;169636	169634			4	
GPFLLGIK	1	Unmodified	843.52182	0.52182486	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	67.424	66.63	2	9.8627E-05	56004	160511_QHF_FH_JSI10i_3	129.96	75.436			1.0477	1.0047	4.9151	7	0	Median	1.2329	1.0329	5.0787	2	0	Median	0.83963	0.9879	1.2933	2	0	Median	1.0789	1.0619	7.8384	2	0	Median	1.0477	1.0462	NaN	1	0	Median	2177500000	924650000	1252800000	404280000	158410000	245870000	350750000	144000000	206760000	566360000	256520000	309840000	856100000	365720000	490380000	20342	1194	19251	125157;125158;125159;125160;125161;125162;125163	169637;169638;169639;169640;169641;169642;169643;169644;169645;169646;169647;169648;169649;169650;169651	169641			15	
GPFLVALGK	1	Unmodified	900.54329	0.54328858	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	65.556	64.735	2	9.7998E-07	52981	160511_QHF_FH_JSI9i_3	135.35	107.83			1.0162	0.96682	5.1734	4	0	Median	1.1316	0.90943	NaN	1	0	Median	0.85369	0.95982	NaN	1	0	Median	1.0728	1.0314	NaN	1	0	Median	0.96272	0.97387	NaN	1	0	Median	1932500000	994610000	937910000	419240000	194360000	224880000	418210000	243440000	174770000	453400000	235360000	218040000	641680000	321460000	320220000	20343	4108	19252	125164;125165;125166;125167	169652;169653;169654;169655;169656;169657;169658;169659;169660;169661;169662;169663;169664;169665	169660			14	
GPFSEISAFK	1	Unmodified	1081.5444	0.5444108	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	62.54	62.126	2	1.8035E-07	53520	160511_QHF_FH_JSI12i_3	118.18	108.19			0.86967	0.95341	16.57	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80272	0.99925	NaN	1	0	Median	1.0081	0.9941	27.606	2	0	Median	0.88898	0.90968	NaN	1	0	Median	1039500000	528560000	510980000	0	0	0	88471000	51262000	37209000	555740000	272750000	282990000	395330000	204550000	190780000	20344	1743	19253	125168;125169;125170;125171;125172	169666;169667;169668;169669	169668			4	
GPFTDVVTTNLK	1	Unmodified	1290.682	0.68196691	5185;671	Q9P0L0;O95292	VAPA;VAPB	Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.7	6.54	2		3					4	1	4	3	3		67.599	62.106	2	3.4989E-32	51000	160511_QHF_FH_JSI9i_3	196.27	170.71			1.0587	1.025	31.401	10	6	Median	1.1236	0.96941	45.712	4	2	Median	0.85051	1.0187	23.793	3	2	Median	1.1103	1.0938	6.2091	3	2	Median	NaN	NaN	NaN	0	0	Median	6669900000	3217700000	3452200000	1263700000	520090000	743600000	1572400000	805840000	766520000	3833800000	1891700000	1942100000	0	0	0	20345	5185;671	19254	125173;125174;125175;125176;125177;125178;125179;125180;125181;125182	169670;169671;169672;169673;169674;169675;169676;169677;169678;169679;169680;169681;169682;169683;169684	169681			15	
GPFYFILGADPQFGLIK	1	Unmodified	1882.0029	0.0029071185	4369	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	99.822	95.124	2;3	1.6188E-12	89052	160511_QHF_FH_JSI12i_3	184.03	162.47			1.0802	1.0562	17.773	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97682	0.93144	NaN	1	1	Median	1.1945	1.1976	NaN	1	1	Median	175350000	91697000	83650000	0	0	0	0	0	0	51350000	30562000	20789000	124000000	61135000	62861000	20346	4369	19255	125183;125184	169685;169686	169686			2	
GPGAGEGPGGAFAR	0	Unmodified	1199.5683	0.56833414	4917	Q9NQA3;C4AMC7;Q6VEQ5	WASH6P;WASH3P;WASH2P	WAS protein family homolog 6;Putative WAS protein family homolog 3;WAS protein family homolog 2	yes	no	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		24.738	23.737	2	0.0091652	20177	160511_QHF_FH_JSI11i_3	47.288	32.621			1.8784	1.6257	NaN	1	1	Median	1.8784	1.6257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19506000	8684700	10822000	19506000	8684700	10822000	0	0	0	0	0	0	0	0	0	20347	4917	19256	125185;125186	169687;169688	169687			2	
GPGASGEQPEPGEAAAGGAAEEAR	0	Unmodified	2164.9621	0.96211753	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	3.16	10				1					2	3	4	2	29.039	27.769	2;3	1.7729E-65	24609	160511_QHF_FH_JSI10i_1	256.49	243.08			1.0067	1.0561	21.524	11	6	Median	1.3698	1.1271	6.2834	2	0	Median	0.91753	1.0918	6.9431	3	2	Median	0.97052	0.94387	28.332	4	3	Median	1.0383	1.0705	1.9156	2	1	Median	745280000	375440000	369840000	142660000	55261000	87400000	216110000	118520000	97594000	237250000	127260000	109990000	149260000	74401000	74860000	20348	4700	19257	125187;125188;125189;125190;125191;125192;125193;125194;125195;125196;125197	169689;169690;169691;169692;169693;169694;169695;169696;169697;169698;169699;169700;169701;169702;169703	169699			15	
GPGDLEAPSNLVISER	0	Unmodified	1652.837	0.836964	4305	Q99715	COL12A1	Collagen alpha-1(XII) chain	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	65.517	64.686	2	0.00012952	57433	160511_QHF_FH_JSI9i_1	91.936	75.799			1.9448	1.7924	1.8732	2	2	Median	2.2478	1.8163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6827	1.7688	NaN	1	1	Median	92031000	23218000	68813000	51122000	13155000	37966000	0	0	0	0	0	0	40910000	10063000	30847000	20349	4305	19258	125198;125199	169704;169705	169705			2	
GPGDTSNFDDYEEEEIR	0	Unmodified	1971.797	0.79700926	1121	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			52.012	51.602	2	0.0007453	46503	160511_QHF_FH_JSI10i_1	62.891	53.702			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20350	1121	19259	125200	169706	169706			1	
GPGFGVQAGL	0	Unmodified	901.46577	0.46576654	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	62.132	61.263	2	0.0016162	55686	160511_QHF_FH_JSI12i_1	64.803	59.948			1.1228	1.0475	9.4893	2	1	Median	1.3428	1.1202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93877	0.97952	NaN	1	0	Median	47245000	17418000	29827000	23428000	7707000	15721000	0	0	0	0	0	0	23816000	9710600	14106000	20351	1158	19260	125201;125202	169707;169708	169707			2	
GPGGSSLLIEALSNSSHK	1	Unmodified	1752.9006	0.90062689	4396	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		70.259	69.378	2;3	4.6347E-09	61528	160511_QHF_FH_JSI11i_3	133.86	122.42			0.93248	0.81034	10.972	4	1	Linear	1.0908	0.8874	NaN	1	0	Median	0.76552	0.88317	NaN	1	0	Median	0.93248	0.87851	18.985	2	1	Median	NaN	NaN	NaN	0	0	Median	631930000	337470000	294460000	133480000	64648000	68833000	184770000	112260000	72515000	313680000	160560000	153110000	0	0	0	20352	4396	19261	125203;125204;125205;125206;125207	169709;169710;169711;169712;169713;169714;169715	169709			6	
GPGLASGQLYSYPAR	0	Unmodified	1535.7732	0.77324153	3884	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				52.534	51.489	2	0.0028869	45203	160511_QHF_FH_JSI9i_2	66.267	36.794			1.3192	1.0931	NaN	1	1	Median	1.3192	1.0931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34835000	12398000	22437000	34835000	12398000	22437000	0	0	0	0	0	0	0	0	0	20353	3884	19262	125208	169716	169716			1	
GPGLFFILPCTDSFIK	1	Unmodified	1810.9328	0.93277864	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	102.23	102.15	2;3	5.6505E-19	88984	160511_QHF_FH_JSI12i_3	210.91	193.1			1.0092	1.3058	27.042	4	2	Linear	0.99331	0.82537	NaN	1	0	Median	0.75017	0.85917	NaN	1	1	Median	1.0254	0.95483	NaN	1	0	Median	1.469	1.4869	NaN	1	1	Median	387680000	174970000	212710000	35215000	19834000	15381000	73544000	44937000	28607000	101700000	48023000	53674000	177220000	62173000	115050000	20354	1286	19263	125209;125210;125211;125212;125213	169717;169718;169719;169720;169721;169722	169722			6	
GPGLGSTQGQTIALPAQGLIEFR	0	Unmodified	2310.2332	0.23319442	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		97.563	97.563	2;3	1.31E-10	86910	160511_QHF_FH_JSI11i_3	144.29	123.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3098500	3098500	0	0	0	0	0	0	0	3098500	3098500	0	0	0	0	20355	2152	19264	125214;125215	169723;169724	169723			2	
GPGLLESPSIFNFTADR	0	Unmodified	1819.9105	0.9104633	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			99.253	99.028	2	0.00028862	81884	160511_QHF_FH_JSI10i_3	82.171	49.224			1.0205	1.0437	2.4499	2	1	Median	1.1866	1.0257	NaN	1	0	Median	0.87766	1.0619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13103000	7014100	6088800	5669400	3097000	2572400	7433500	3917100	3516400	0	0	0	0	0	0	20356	3859	19265	125216;125217;125218	169725;169726;169727;169728	169725			4	
GPGNPLDHQITNER	0	Unmodified	1546.7488	0.7488177	4195	Q96PC5;Q86UF2;A4D2H0	MIA2;CTAGE6;CTAGE15	Melanoma inhibitory activity protein 2;cTAGE family member 6;cTAGE family member 15	yes	no	0	0	0	0		By MS/MS			2	0		1									1			28.596	27.667	3	0.0060401	24158	160511_QHF_FH_JSI10i_2	41.378	30.59			0.96791	1.17	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96791	1.17	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20529000	10975000	9554500	0	0	0	20529000	10975000	9554500	0	0	0	0	0	0	20357	4195	19266	125219	169729	169729			1	
GPGNPVPGPLAPLPDYMSEEK	1	Unmodified	2164.0511	0.051055878	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	84.279	83.81	2;3	1.2072E-17	76382	160511_QHF_FH_JSI12i_1	125.53	103.33			1.0123	0.94311	11.913	5	3	Median	1.0744	0.88257	NaN	1	0	Median	0.7101	0.79119	NaN	1	1	Median	1.0081	0.94311	NaN	1	0	Median	1.0319	1.0404	5.1523	2	2	Median	113800000	53079000	60720000	22107000	8813100	13294000	20002000	11690000	8312700	24366000	14806000	9560500	47323000	17770000	29553000	20358	3101	19267	125220;125221;125222;125223;125224;125225	169730;169731;169732;169733;169734;169735;169736;169737	169734			8	
GPGPEGGGGGSYFSGQGSDTGASLK	1	Unmodified	2225.9825	0.98251862	1113	P17275	JUNB	Transcription factor jun-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	46.342	45.578	2;3	8.4672E-21	40518	160511_QHF_FH_JSI9i_1	158.64	153.15			0.98453	0.84494	37.012	6	4	Median	0.98453	0.80555	15.986	2	1	Median	0.6339	0.7368	NaN	1	0	Median	0.80514	0.79154	NaN	1	1	Median	1.5015	1.5214	26.215	2	2	Median	166070000	84643000	81428000	49465000	23275000	26190000	29082000	18142000	10940000	44397000	25151000	19245000	43128000	18075000	25054000	20359	1113	19268	125226;125227;125228;125229;125230;125231;125232	169738;169739;169740;169741;169742;169743;169744;169745;169746	169744			9	
GPGPLQER	0	Unmodified	852.44537	0.44536545	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	12.546	12.169	2	0.0077371	10011	160511_QHF_FH_JSI10i_2	58.604	18.958			0.89938	0.89224	8.0752	6	0	Median	0.98687	0.83815	NaN	1	0	Median	0.67732	0.82835	NaN	1	0	Median	0.95042	0.95294	0.46409	2	0	Median	0.83112	0.8867	12.026	2	0	Median	967420000	525670000	441740000	159640000	81527000	78116000	136740000	77863000	58875000	366390000	196480000	169910000	304650000	169800000	134840000	20360	1556	19269	125233;125234;125235;125236;125237;125238	169747;169748;169749;169750;169751	169750			5	
GPGTSFEFALAIVEALNGK	1	Unmodified	1919.9993	0.9992783	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.05		3	6	4					8	4	7	6	4	101.7	97.161	2;3	2.1999E-275	52135	160513_QHF_FH_JSI11Kac_6	415.16	387.19			0.94073	0.90049	23.809	18	2	Median	0.98111	0.82529	18.064	4	0	Median	0.78189	0.92253	40.757	5	2	Median	0.8523	0.81748	9.874	5	0	Median	0.94582	0.98748	6.9988	4	0	Median	6544400000	3382000000	3162400000	1721300000	825140000	896120000	1958300000	1064900000	893410000	1110700000	619070000	491650000	1754000000	872830000	881200000	20361	4276	19270	125239;125240;125241;125242;125243;125244;125245;125246;125247;125248;125249;125250;125251;125252;125253;125254;125255;125256;125257;125258;125259	169752;169753;169754;169755;169756;169757;169758;169759;169760;169761;169762;169763;169764;169765;169766;169767;169768;169769;169770;169771;169772;169773;169774;169775;169776;169777;169778;169779;169780;169781;169782;169783	169759			30	
GPGVDLPSVNLSMPK	1	Unmodified	1509.7861	0.78611441	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								3	1	2	1	80.166	79.651	2	2.4085E-65	72694	160511_QHF_FH_JSI12i_1	229.97	211.29			0.68008	0.61951	39.879	6	2	Median	0.58575	0.47687	46.964	2	1	Median	0.47123	0.5774	NaN	1	0	Median	0.80396	0.78429	46.14	2	1	Median	0.83908	0.87164	NaN	1	0	Median	1267200000	736310000	530930000	412280000	253050000	159230000	279590000	177350000	102230000	407150000	233010000	174140000	168220000	72901000	95322000	20362	2286	19271	125260;125261;125262;125263;125264;125265;125266	169784;169785;169786;169787;169788;169789;169790;169791;169792;169793;169794;169795	169788			12	
GPGVDVNLK	1	Unmodified	897.49198	0.4919813	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.548	31.95	2	0.0013004	28751	160511_QHF_FH_JSI12i_1	78.113	53.294			0.8501	0.82514	40.485	5	1	Median	0.99025	0.82514	NaN	1	0	Median	0.59298	0.6933	NaN	1	0	Median	0.8501	0.83761	NaN	1	0	Median	1.1235	1.1748	65.986	2	1	Median	803630000	443490000	360130000	143350000	73212000	70135000	195530000	124660000	70874000	203350000	110440000	92908000	261390000	135180000	126210000	20363	2286	19272	125267;125268;125269;125270;125271	169796;169797	169797			2	
GPGVGLLGISK	1	Unmodified	996.59678	0.59678072	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	58.263	57.431	2	0.0011792	49214	160511_QHF_FH_JSI12i_3	65.535	42.107			0.87348	0.92354	9.0977	4	0	Median	1.2507	1.0078	NaN	1	0	Median	0.86022	0.98209	NaN	1	0	Median	0.88695	0.83702	NaN	1	0	Median	0.84083	0.86848	NaN	1	0	Median	1082400000	559210000	523150000	176800000	87134000	89670000	150810000	80788000	70020000	279480000	131380000	148090000	475270000	259900000	215370000	20364	3313	19273	125272;125273;125274;125275	169798	169798			1	
GPHGGAASAQDGR	0	Unmodified	1179.5381	0.53809664	551	O75638	CTAG2	Cancer/testis antigen 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.6	0.49		2	3							1	4			1.0663	0.66977	2	6.9748E-06	530	160511_QHF_FH_JSI9i_2	125.48	106.75			1.0154	1.068	16.384	4	0	Median	1.3275	1.0992	NaN	1	0	Median	0.85847	1.0377	20.044	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66677000	32664000	34013000	25595000	10182000	15413000	41082000	22482000	18600000	0	0	0	0	0	0	20365	551	19274	125276;125277;125278;125279;125280	169799;169800;169801;169802;169803;169804	169803			6	
GPHLANSILFQSSGLTNGIIEEK	1	Unmodified	2424.2649	0.26488848	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		86.96	86.361	3	7.4622E-17	76780	160511_QHF_FH_JSI11i_3	127.58	119.19			0.95329	0.83908	8.8519	2	0	Median	1.0816	0.89328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84023	0.78817	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146230000	78251000	67980000	41035000	21557000	19478000	0	0	0	105200000	56694000	48502000	0	0	0	20366	4481	19275	125281;125282	169805;169806;169807;169808;169809	169805			5	
GPHLVQSDGTVPFWAHAGNAIPSSDQIR	0	Unmodified	2956.458	0.45800241	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.11		2	7						4	5	3	4	1	76.535	73.131	3;4	3.7262E-34	37408	160513_QHF_FH_JSI11Kac_6	140.09	129.97			1.1716	1.0455	12.518	12	1	Median	1.2203	0.98897	10.07	5	1	Median	0.8531	1.0338	4.6412	3	0	Median	1.1287	1.0573	12.155	3	0	Median	1.3269	1.4181	NaN	1	0	Median	1833100000	868310000	964800000	787150000	331880000	455270000	626620000	336080000	290540000	334770000	162230000	172540000	84585000	38129000	46456000	20367	1648	19276	125283;125284;125285;125286;125287;125288;125289;125290;125291;125292;125293;125294;125295	169810;169811;169812;169813;169814;169815;169816;169817;169818;169819;169820;169821;169822;169823;169824;169825;169826;169827;169828;169829;169830	169818			21	
GPHPSQGPIPFQQQK	1	Unmodified	1644.8372	0.83723877	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.076	30.076	3	0.013652	25932	160511_QHF_FH_JSI11i_3	42.52	32.421			0.9562	0.88496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9562	0.88496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86925000	43682000	43243000	0	0	0	0	0	0	86925000	43682000	43243000	0	0	0	20368	4591	19277	125296	169831;169832	169832			2	
GPHVDVSGPDIDIEGPEGK	1	Unmodified	1916.9116	0.91158551	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	3	1	4	57.072	56.454	2;3	1.6922E-17	50958	160511_QHF_FH_JSI10i_1	184.21	173.3			0.81264	0.86237	21.32	8	4	Median	0.61406	0.53019	NaN	1	1	Median	0.68864	0.77539	20.848	3	2	Median	0.93775	0.84993	NaN	1	0	Median	0.90842	0.8808	6.3453	3	1	Plateau	429530000	241010000	188520000	45196000	30683000	14513000	149920000	86802000	63120000	39623000	21911000	17712000	194790000	101620000	93172000	20369	2286	19278	125297;125298;125299;125300;125301;125302;125303;125304;125305	169833;169834;169835;169836;169837;169838;169839;169840;169841;169842;169843	169838			9	
GPIAAGTSDHFTKPSPR	1	Acetyl (K)	1779.8904	0.89039656	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.71							3	8	11	4	5	6	7	50.451	40.455	2;3	1.7389E-56	21866	160513_QHF_FH_JSI9Kac_5	200.58	185.66			1.0184	0.98822	14.181	17	0	Median	1.1334	0.9768	2.2868	3	0	Median	0.80789	0.96004	10.815	5	0	Median	1.0483	1.0069	5.1607	4	0	Median	1.0184	1.1128	16.135	5	0	Median	1078600000	557290000	521320000	189610000	92796000	96817000	341690000	193070000	148620000	269050000	134460000	134580000	278250000	136950000	141300000	20370	3647	19279	125306;125307;125308;125309;125310;125311;125312;125313;125314;125315;125316;125317;125318;125319;125320;125321;125322;125323;125324;125325;125326;125327	169844;169845;169846;169847;169848;169849;169850;169851;169852;169853;169854;169855;169856;169857;169858;169859;169860;169861;169862;169863;169864;169865;169866;169867;169868;169869;169870;169871;169872;169873;169874;169875;169876;169877;169878;169879	169845	2905		36	
GPIAFWAR	0	Unmodified	916.49192	0.49192172	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	11.7	6.13			2						4	3	2		1	66.222	59.89	2	0.00073527	32945	160513_QHF_FH_JSI10Kac_6	106.85	80.367			1.1377	1.0415	8.8935	6	2	Median	1.3143	1.0442	5.1254	3	2	Plateau	0.92147	1.0633	4.1265	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1604	1.2455	NaN	1	0	Median	225490000	108950000	116540000	91343000	42860000	48483000	126620000	63941000	62683000	0	0	0	7522600	2150200	5372400	20371	5436	19280	125328;125329;125330;125331;125332;125333	169880;169881;169882;169883;169884;169885	169885			6	
GPIFALK	1	Unmodified	744.45341	0.45341094	4568;459	Q9BZK7;O60907	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	49.973	49.123	2	0.005487	40292	160511_QHF_FH_JSI9i_3	94.669	68.56			0.90269	0.9209	3.9657	4	0	Median	1.2128	0.9782	NaN	1	0	Median	0.79437	0.9307	NaN	1	0	Median	0.95934	0.91121	NaN	1	0	Median	0.84939	0.89158	NaN	1	0	Median	1362900000	676270000	686610000	273310000	121280000	152030000	256860000	127560000	129300000	288970000	155770000	133200000	543740000	271670000	272070000	20372	4568;459	19281	125334;125335;125336;125337	169886;169887;169888;169889;169890;169891;169892	169889			7	
GPIKFNVWDTAGQEK	2	Acetyl (K)	1730.8628	0.86278482	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	80.728	70.264	2	3.149E-23	37205	160513_QHF_FH_JSI11Kac_5	150.68	131.44			0.44968	0.492	105.2	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85989	1.0352	NaN	1	0	Median	0.23516	0.23383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19860000	15649000	4210400	0	0	0	2460300	1270400	1189900	16590000	13569000	3020400	809820	809820	0	20373	2021	19282	125338;125339;125340	169893;169894;169895;169896;169897	169893	2058;2059		5	
GPILCFVGPPGVGK	1	Unmodified	1396.7537	0.75369207	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.351	78.096	2	7.5113E-05	67783	160511_QHF_FH_JSI12i_3	115.71	87.701			0.6179	0.66816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6179	0.66816	NaN	1	1	Median	11290000	6744800	4544800	0	0	0	0	0	0	0	0	0	11290000	6744800	4544800	20374	3355	19283	125341	169898	169898			1	
GPILMELQTYR	0	Unmodified	1319.6908	0.69075746	903;1328	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	2	2	2	71.772	70.989	2	1.1514E-47	59486	160511_QHF_FH_JSI10i_3	214.83	214.83			1.0569	1.0582	7.5008	7	0	Median	1.3208	1.1254	5.0643	2	0	Median	0.84734	1.0214	8.2242	2	0	Median	1.0814	1.0366	2.9108	2	0	Median	0.92519	0.93884	NaN	1	0	Median	1417500000	662030000	755470000	454280000	205840000	248440000	336440000	185170000	151270000	429330000	171490000	257840000	197440000	99529000	97916000	20375	903;1328	19284	125342;125343;125344;125345;125346;125347;125348;125349	169899;169900;169901;169902;169903;169904;169905;169906;169907;169908;169909;169910;169911;169912;169913;169914	169902			16	
GPITAVAFAPDGR	0	Unmodified	1270.667	0.66698555	5625	Q9Y4E6	WDR7	WD repeat-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			58.539	56.999	2	2.4424E-05	47680	160511_QHF_FH_JSI10i_3	83.081	70.125			1.2218	1.202	48.379	2	2	Median	2.0515	1.6923	NaN	1	1	Median	0.72765	0.85375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26889000	11065000	15824000	17524000	5669400	11854000	9365100	5395600	3969500	0	0	0	0	0	0	20376	5625	19285	125350;125351;125352	169915;169916;169917	169916			3	
GPITSAAELNDPQSILLR	0	Unmodified	1894.016	0.015991	1127	P17813	ENG	Endoglin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		82.211	82.211	3	0.014596	73440	160511_QHF_FH_JSI11i_3	36.451	26.969			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20377	1127	19286	125353	169918	169918			1	
GPLAAAFSSSEVK	1	Unmodified	1262.6507	0.65066678	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		51.425	49.86	2	1.1042E-05	43946	160511_QHF_FH_JSI11i_3	85.963	70.321			0.59457	0.67547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59457	0.67547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146960000	78346000	68618000	0	0	0	146960000	78346000	68618000	0	0	0	0	0	0	20378	316	19287	125354;125355	169919;169920	169919			2	
GPLAAGLGPLVPGK	1	Unmodified	1245.7445	0.74450759	297	O15525	MAFG	Transcription factor MafG	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.455	70.156	2	0.060699	60756	160511_QHF_FH_JSI12i_3	46.447	36.215			0.83719	0.85847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83719	0.85847	NaN	1	0	Median	16693000	8705600	7987300	0	0	0	0	0	0	0	0	0	16693000	8705600	7987300	20379	297	19288	125356	169921	169921			0	
GPLAELPSAR	0	Unmodified	1009.5556	0.55564418	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2.67	0.471		1	2							1		1	1	41.321	40.901	2	0.0090668	35856	160511_QHF_FH_JSI9i_2	59.153	35.629			1.1113	1.1234	17.21	3	1	Plateau	1.7537	1.4749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1487	1.0726	NaN	1	0	Median	1.1113	1.1234	NaN	1	0	Median	237970000	91202000	146770000	75284000	23571000	51713000	0	0	0	77337000	31654000	45683000	85351000	35977000	49373000	20380	4581	19289	125357;125358;125359	169922;169923	169922			2	
GPLATGGIK	1	Unmodified	812.4756	0.47560295	5533	Q9Y2S6	TMA7	Translation machinery-associated protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.75	2	4	5							3	3	3	2	21.661	20.935	2	0.00066253	17059	160511_QHF_FH_JSI12i_3	76.478	24.075			0.4732	0.55639	69.046	10	6	Median	0.29818	0.25447	132.39	3	1	Plateau	0.53435	0.62087	15.906	3	2	Median	0.55277	0.54196	63.062	2	2	Median	0.56815	0.61097	56.573	2	1	Median	3543800000	2657400000	886340000	1082900000	893570000	189290000	536950000	372630000	164320000	1169400000	946300000	223080000	754570000	444910000	309660000	20381	5533	19290	125360;125361;125362;125363;125364;125365;125366;125367;125368;125369;125370	169924;169925;169926;169927;169928;169929;169930;169931;169932;169933;169934;169935	169933			12	
GPLATGGIKK	2	Unmodified	940.57057	0.57056597	5533	Q9Y2S6	TMA7	Translation machinery-associated protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	14.74	14.262	2;3	7.0229E-06	11522	160511_QHF_FH_JSI11i_3	107.57	34.314			0.86305	0.83184	9.831	8	0	Median	0.98538	0.78311	3.1709	2	0	Median	0.76502	0.88607	5.0655	2	0	Median	0.94641	0.9068	16.069	2	0	Median	0.80288	0.81	9.2956	2	0	Median	3334000000	1870700000	1463300000	752340000	373100000	379240000	447070000	298030000	149030000	850480000	494470000	356000000	1284100000	705060000	579020000	20382	5533	19291	125371;125372;125373;125374;125375;125376;125377;125378	169936;169937;169938;169939;169940;169941;169942;169943;169944;169945;169946;169947;169948;169949;169950;169951;169952;169953;169954	169939			19	
GPLDKWR	1	Acetyl (K)	912.48175	0.48175096	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		56.258	45.546	2	0.035245	25025	160513_QHF_FH_JSI11Kac_5	67.032	25.53			0.53027	0.57632	49.725	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6902	0.81916	NaN	1	0	Median	0.40741	0.40547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31125000	20782000	10344000	0	0	0	9651200	5689400	3961700	21474000	15092000	6382000	0	0	0	20383	1292	19292	125379;125380	169955	169955			1	
GPLEPSEPAVVAAAR	0	Unmodified	1462.778	0.77799256	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.665	50.999	2	0.0044952	46336	160511_QHF_FH_JSI12i_1	54.776	38.551			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20384	1320	19293	125381	169956	169956			1	
GPLESKGHKK	3	2 Acetyl (K)	1163.6299	0.62987176	5747	Q9Y6Q9	NCOA3	Nuclear receptor coactivator 3	yes	yes	2	0	0	2			By MS/MS	By MS/MS	15	0								2				1	1	18.931	9.6118	3	0.0080771	7707	160513_QHF_FH_JSI11Kac_5	43.68	27.426			1.3421	1.3676	10.457	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5151	1.4725	NaN	1	0	Median	1.1888	1.2701	NaN	1	0	Median	5739700	2407300	3332400	0	0	0	0	0	0	3354400	1394500	1959900	2385300	1012800	1372500	20385	5747	19294	125382;125383	169957	169957	3545;3546		1	
GPLEWQDYIYK	1	Unmodified	1410.682	0.68196691	3807	Q8WXD5	GEMIN6	Gem-associated protein 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.098	79.946	2	3.7785E-05	69100	160511_QHF_FH_JSI12i_2	104.22	88.331			1.3574	1.4843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3574	1.4843	NaN	1	1	Median	18407000	7790800	10616000	0	0	0	0	0	0	0	0	0	18407000	7790800	10616000	20386	3807	19295	125384	169958	169958			1	
GPLEYVPSAK	1	Unmodified	1059.5601	0.56006086	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	44.115	43.213	2	0.0048682	38355	160511_QHF_FH_JSI9i_1	56.916	41.655			1.7076	1.9281	34.026	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2725	1.5158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2916	2.4526	NaN	1	0	Median	118460000	46401000	72057000	0	0	0	76771000	31916000	44855000	0	0	0	41687000	14485000	27202000	20387	2573	19296	125385;125386;125387	169959;169960;169961	169961			2	
GPLGPNWK	1	Unmodified	867.46029	0.46028724	1636;2145	Q00169;P48739	PITPNA;PITPNB	Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform	no	no	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		34.629	33.919	2	0.0093536	29548	160511_QHF_FH_JSI11i_3	64.803	25.585			0.81195	0.86898	28.904	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88369	1.066	NaN	1	1	Median	0.74603	0.70835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	298220000	184350000	113870000	0	0	0	89690000	54935000	34755000	208530000	129410000	79117000	0	0	0	20388	2145;1636	19297	125388;125389	169962;169963	169962			2	
GPLINSEFYTGWLDHWGQPHSTIK	1	Unmodified	2782.3503	0.35034944	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		99.707	99.622	4	8.635E-10	82991	160511_QHF_FH_JSI10i_3	84.181	81.025			0.74827	0.75941	43.202	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92648	1.0307	NaN	1	0	Median	0.60434	0.55951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97902000	53059000	44843000	0	0	0	29187000	19763000	9423500	68715000	33295000	35420000	0	0	0	20389	1094	19298	125390;125391	169964;169965	169965			2	
GPLLEDGALSQAVSAGASSPEFTK	1	Unmodified	2331.1594	0.15942035	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							2	2	2	4	83.791	83.136	3	7.9726E-11	75964	160511_QHF_FH_JSI11i_1	89.462	76.405			1.0314	0.98002	10.857	9	4	Median	1.0547	0.87779	4.4091	2	1	Median	0.74019	0.88563	14.323	2	1	Median	1.0774	1.0706	3.8405	2	0	Median	0.94663	1.0133	8.0896	3	2	Median	462470000	248830000	213640000	80785000	35226000	45559000	126460000	82143000	44315000	127610000	65182000	62424000	127620000	66283000	61338000	20390	3614	19299	125392;125393;125394;125395;125396;125397;125398;125399;125400;125401	169966;169967;169968;169969;169970;169971;169972;169973;169974;169975;169976;169977;169978;169979;169980;169981;169982;169983	169967			18	
GPLLEEQALTK	1	Unmodified	1197.6605	0.66050319	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	1	4	49.054	48.249	2	4.5041E-13	41324	160511_QHF_FH_JSI12i_2	147.74	120.61			0.97444	1.0283	26.772	6	1	Median	1.2258	1.053	NaN	1	0	Median	0.84677	1.0598	NaN	1	0	Median	0.97738	1.0036	NaN	1	0	Median	0.97151	1.0041	39.088	3	1	Median	607960000	304490000	303480000	108240000	47222000	61018000	104260000	58516000	45744000	160010000	79676000	80338000	235450000	119070000	116380000	20391	2844	19300	125402;125403;125404;125405;125406;125407;125408	169984;169985;169986;169987;169988;169989;169990;169991;169992;169993;169994;169995;169996	169985			13	
GPLLHISPAEELYFGSTESGEK	1	Unmodified	2360.1536	0.15360669	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	3	1	1	81.354	80.78	3	1.5867E-13	69997	160511_QHF_FH_JSI12i_3	119.62	96.744			0.99948	1.0259	11.123	5	2	Median	1.0688	0.94823	NaN	1	1	Median	0.9577	1.1529	10.337	2	1	Median	1.0736	1.0259	NaN	1	0	Median	0.91186	0.94667	NaN	1	0	Median	362700000	191220000	171470000	15792000	11287000	4504400	47108000	26289000	20819000	183270000	89886000	93379000	116530000	63760000	52771000	20392	3668	19301	125409;125410;125411;125412;125413;125414	169997;169998;169999;170000;170001;170002;170003;170004;170005;170006	170006			10	
GPLLVQDVVFTDEMAHFDR	0	Unmodified	2188.0623	0.062289266	800	P04040	CAT	Catalase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	99.599	99.557	3	7.1777E-14	86269	160511_QHF_FH_JSI12i_3	135.28	125.87			1.2605	1.1924	17.603	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3774	1.3383	23.042	2	2	Median	1.1944	1.1924	NaN	1	1	Median	131480000	56594000	74890000	0	0	0	0	0	0	71064000	27619000	43445000	60420000	28975000	31445000	20393	800	19302	125415;125416;125417	170007;170008;170009	170009			3	
GPLLVQDVVFTDEMAHFDRER	0	Unmodified	2473.206	0.20599339	800	P04040	CAT	Catalase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	12.8	5.63			1						3	1	2		1	86.862	80.698	4	3.9777E-13	41763	160513_QHF_FH_JSI9Kac_6	110.41	107.41			1.0938	1.0769	15.117	4	0	Median	1.2877	1.1016	NaN	1	0	Median	0.8513	0.97799	10.425	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2594	1.3113	NaN	1	0	Median	266550000	117040000	149510000	62021000	25248000	36773000	168570000	74995000	93572000	0	0	0	35965000	16800000	19164000	20394	800	19303	125418;125419;125420;125421	170010;170011;170012;170013	170011			3	
GPLLVSTESHPVK	1	Unmodified	1362.7507	0.75071518	5568	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	32.415	32.369	2;3	1.6886E-05	27303	160511_QHF_FH_JSI12i_3	95.417	88.689			1.1718	1.1486	26.649	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4376	1.3358	2.4839	2	1	Median	0.89027	0.87814	19.093	2	1	Median	352010000	160720000	191290000	0	0	0	0	0	0	115990000	48025000	67965000	236020000	112700000	123320000	20395	5568	19304	125422;125423;125424;125425	170014;170015;170016;170017;170018	170017			5	
GPLMMYISK	1	Oxidation (M)	1054.5191	0.51912402	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.85			6				1	4	8	5	6	4	4	56.3	49.212	2	9.456E-08	41465	160511_QHF_FH_JSI10i_3	141.39	115			0.93798	1.0006	14.386	19	1	Median	1.2672	0.99576	13.712	5	0	Median	0.91086	1.069	9.2649	6	0	Median	0.91268	0.85622	13.267	4	0	Median	0.92647	0.96086	17.559	4	1	Median	5518000000	2594300000	2923700000	2236300000	917310000	1319000000	1616100000	844770000	771290000	717860000	351210000	366650000	947760000	480980000	466780000	20396	1033	19305	125426;125427;125428;125429;125430;125431;125432;125433;125434;125435;125436;125437;125438;125439;125440;125441;125442;125443;125444	170019;170020;170021;170022;170023;170024;170025;170026;170027;170028;170029;170030;170031;170032;170033;170034;170035;170036;170037;170038;170039;170040;170041;170042;170043;170044;170045;170046;170047;170048;170049;170050;170051;170052;170053;170054;170055	170026		631;632	37	
GPLMMYISK	1	Unmodified	1038.5242	0.5242094	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.68	2	2	4					2	4	2	5	5	2	64.198	59.713	2	2.3953E-11	51299	160511_QHF_FH_JSI12i_3	160.75	127.91			0.90911	0.99865	10.436	14	0	Median	1.169	1.0465	3.651	2	0	Median	0.8844	1.002	8.6559	5	0	Median	0.90048	0.90396	11.719	5	0	Median	0.95623	0.97505	7.4127	2	0	Median	41692000000	18815000000	22877000000	10379000000	3698900000	6680100000	8782300000	4593300000	4189000000	12691000000	6158300000	6532300000	9839600000	4364100000	5475600000	20397	1033	19305	125445;125446;125447;125448;125449;125450;125451;125452;125453;125454;125455;125456;125457;125458	170056;170057;170058;170059;170060;170061;170062;170063;170064;170065;170066;170067;170068;170069;170070;170071;170072;170073;170074;170075;170076;170077;170078;170079;170080;170081;170082;170083;170084;170085;170086;170087;170088	170084			33	
GPLMMYISK	1	2 Oxidation (M)	1070.514	0.51403865	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.624							1	2	9	4	2	3	3	45.479	35.913	2	0.0022503	20138	160513_QHF_FH_JSI9Kac_5	60.91	51.322			1.0609	1.0562	16.355	12	0	Median	1.1848	0.99272	12.131	4	0	Median	1.0609	1.2676	3.6803	2	0	Median	1.2529	1.2706	25.098	3	0	Median	0.88976	0.97265	8.2561	3	0	Median	143120000	67871000	75246000	63327000	28495000	34833000	16888000	9046600	7841100	32894000	14339000	18555000	30008000	15991000	14017000	20398	1033	19305	125459;125460;125461;125462;125463;125464;125465;125466;125467;125468;125469;125470	170089;170090;170091;170092;170093	170089		631;632	5	
GPLMVNSNYYAMDLLYILPTHIQAAR	0	Unmodified	2963.5038	0.50375532	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.621	90.9	3	0.0015335	52734	160513_QHF_FH_JSI10Kac_6	49.709	42.834			1.0005	1.1855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0005	1.1855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204520000	89797000	114720000	0	0	0	204520000	89797000	114720000	0	0	0	0	0	0	20399	1704	19306	125471	170094	170094			0	
GPLPAAPPVAPER	0	Unmodified	1270.7034	0.70337105	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.25	4	1				1	3			1	2	3	3	52.63	48.315	2	6.1195E-06	42991	160511_QHF_FH_JSI9i_1	125.75	120.44			0.78889	0.8381	16.262	8	3	Median	1.1818	0.96016	NaN	1	0	Median	0.6564	0.80074	14.739	2	1	Median	0.80711	0.78661	7.5337	2	1	Median	0.81429	0.84664	25.246	3	1	Median	2520100000	1324700000	1195400000	644650000	295560000	349090000	595030000	331460000	263570000	715230000	386540000	328690000	565170000	311140000	254040000	20400	4919	19307	125472;125473;125474;125475;125476;125477;125478;125479;125480	170095;170096;170097;170098;170099;170100;170101;170102;170103;170104;170105;170106;170107;170108	170105			14	
GPLPAGTILK	1	Unmodified	965.59097	0.59096706	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.504	50.838	2	0.046599	46208	160511_QHF_FH_JSI12i_1	36.334	18.948			1.0023	1.0212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0023	1.0212	NaN	1	0	Median	32564000	16329000	16236000	0	0	0	0	0	0	0	0	0	32564000	16329000	16236000	20401	1743	19308	125481	170109;170110	170110			2	
GPLPLSSQHR	0	Unmodified	1090.5883	0.5883413	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			4						1	3	1	1		20.413	17.644	2;3	3.9332E-05	14376	160511_QHF_FH_JSI9i_3	74.267	68.486			0.85809	0.6942	23.848	5	3	Median	0.88951	0.6942	3.4672	3	2	Plateau	0.52756	0.59055	NaN	1	1	Median	1.1113	1.1162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	563640000	308610000	255030000	425310000	229080000	196230000	133820000	77305000	56519000	4502900	2225800	2277000	0	0	0	20402	1556	19309	125482;125483;125484;125485;125486	170111;170112;170113;170114;170115	170114			4	
GPLPMEAIEK	1	Unmodified	1083.5634	0.56343168	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.104	52.304	2	0.02175	47568	160511_QHF_FH_JSI12i_1	43.282	29.075			1.1239	0.98674	24.862	2	2	Median	1.4626	1.1764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86364	0.82766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45217000	21774000	23443000	19582000	9854400	9727300	0	0	0	25636000	11920000	13716000	0	0	0	20403	3094	19310	125487;125488;125489	170116;170117;170118	170117			3	
GPLQSVQVFGR	0	Unmodified	1186.6459	0.64585618	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	56.037	55.222	2	1.2234E-59	48798	160511_QHF_FH_JSI10i_2	234.71	192.6			1.1467	0.99084	15.191	12	0	Plateau	1.2146	0.96777	31.076	3	0	Median	0.84805	0.97859	3.7098	3	0	Plateau	0.97863	0.91445	5.727	3	0	Plateau	0.76968	0.88057	4.5309	3	0	Plateau	7710200000	3873100000	3837100000	2739700000	1236700000	1503000000	2582500000	1386400000	1196100000	1639200000	844400000	794800000	748740000	405610000	343130000	20404	1987	19311	125490;125491;125492;125493;125494;125495;125496;125497;125498;125499;125500;125501	170119;170120;170121;170122;170123;170124;170125;170126;170127;170128;170129;170130;170131;170132;170133;170134;170135	170133			16	
GPLSGAASWEHIK	1	Unmodified	1351.6884	0.68844927	3097	Q6P1R4	DUS1L	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.528	46.286	3	2.3783E-07	39426	160511_QHF_FH_JSI12i_3	109.6	102.34			0.14579	0.16585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14579	0.16585	NaN	1	0	Median	73333000	65223000	8109800	0	0	0	0	0	0	0	0	0	73333000	65223000	8109800	20405	3097	19312	125502	170136	170136			1	
GPLSGHK	1	Unmodified	694.37622	0.37622326	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				0.50897	0.062767	2	0.0082581	315	160511_QHF_FH_JSI9i_3	84.244	50.505			1.1564	0.95467	NaN	1	0	Median	1.1564	0.95467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69272000	28533000	40739000	69272000	28533000	40739000	0	0	0	0	0	0	0	0	0	20406	4221	19313	125503	170137;170138	170138			2	
GPLTISAQENVK	1	Unmodified	1255.6772	0.67721588	2711	Q15811	ITSN1	Intersectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	38.752	37.914	2	8.7202E-05	33255	160511_QHF_FH_JSI11i_3	104.82	86.96		+	0.60708	0.70093	35.041	5	5	Median	0.50438	0.42774	9.5506	2	2	Median	0.60708	0.70093	NaN	1	1	Median	0.94638	0.87962	NaN	1	1	Median	0.77669	0.80634	NaN	1	1	Median	267490000	151370000	116120000	58677000	39147000	19531000	24153000	14187000	9966900	68177000	32919000	35258000	116490000	65119000	51368000	20407	2711	19314	125504;125505;125506;125507;125508	170139;170140;170141;170142;170143	170139			5	
GPLVNASLR	0	Unmodified	925.53451	0.53451481	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			34.274	32.858	2	0.0054802	26930	160511_QHF_FH_JSI9i_3	72.485	47.562			1.0516	0.99422	6.4086	2	1	Median	1.1891	0.95017	NaN	1	1	Median	0.93009	1.0403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195550000	89277000	106270000	156050000	70997000	85054000	39497000	18280000	21217000	0	0	0	0	0	0	20408	197	19315	125509;125510	170144;170145	170145			2	
GPNAVQLVK	1	Unmodified	924.53927	0.53926584	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	29.783	29.106	2	4.6266E-05	26310	160511_QHF_FH_JSI12i_1	98.458	66.523			0.93623	0.88416	23.784	9	0	Median	0.98769	0.82114	8.9684	2	0	Median	0.65906	0.78789	16.137	2	0	Median	1.2611	1.2477	35.679	2	0	Median	0.87595	0.88416	12.403	3	0	Plateau	643790000	338620000	305170000	130490000	68528000	61960000	142880000	82252000	60625000	160030000	75663000	84367000	210400000	112180000	98218000	20409	3290	19316	125511;125512;125513;125514;125515;125516;125517;125518;125519	170146;170147;170148;170149;170150;170151;170152;170153;170154;170155	170149			10	
GPNGAIFELGPR	0	Unmodified	1226.6408	0.6407708	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.208	60.208	2	0.004846	53467	160511_QHF_FH_JSI11i_3	55.314	41.621			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20410	1701	19317	125520	170156	170156			1	
GPNGYGFHLHGEK	1	Unmodified	1411.6633	0.66329715	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		26.175	25.174	3;4	7.9037E-05	20812	160511_QHF_FH_JSI9i_3	60.196	47.24			0.94429	1.0036	8.6613	4	0	Linear	1.0994	0.90375	10.587	2	0	Median	0.78737	0.93819	NaN	1	0	Median	0.85987	0.8136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	238350000	129820000	108530000	145810000	75382000	70432000	55123000	33227000	21896000	37418000	21214000	16204000	0	0	0	20411	198	19318	125521;125522;125523;125524	170157;170158;170159;170160;170161	170159			3	
GPNKHTLTQIK	2	Acetyl (K)	1277.7092	0.70918471	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	34.701	25.742	2;3	0.00022469	14488	160513_QHF_FH_JSI11Kac_6	83.182	67.553			0.72141	0.69219	48.395	8	0	Median	0.917	0.77579	2.1618	2	0	Median	0.96995	1.1447	7.3557	2	0	Median	0.33824	0.32998	2.4571	2	0	Median	0.57258	0.60824	4.3224	2	0	Median	206970000	134540000	72433000	17321000	8225500	9095000	53191000	23427000	29763000	113160000	89197000	23962000	23303000	13690000	9612800	20412	1494	19319	125525;125526;125527;125528;125529;125530;125531;125532	170162;170163;170164;170165;170166;170167	170163	1506;1507		6	
GPNNATLFTAAEIAPFVEILLTNLFK	1	Unmodified	2803.516	0.51601779	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	106.2	98.293	2;3;4	9.021E-247	59545	160513_QHF_FH_JSI10Kac_6	395.94	360.28			0.81636	0.8953	10.375	5	0	Median	0.89902	0.77251	NaN	1	0	Median	0.78187	0.92622	4.8016	2	0	Median	0.97501	0.93434	NaN	1	0	Median	0.73696	0.77283	NaN	1	0	Median	791570000	435590000	355980000	39529000	20294000	19234000	596780000	332250000	264530000	47074000	21807000	25268000	108190000	61244000	46950000	20413	1844	19320	125533;125534;125535;125536;125537	170168;170169;170170;170171;170172;170173;170174;170175;170176	170173			9	
GPNSALVQQLIK	1	Unmodified	1266.7296	0.7295858	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							1	1		2	64.85	63.703	2	1.135E-10	52018	160511_QHF_FH_JSI9i_3	143.79	115.58			0.97801	1.0502	14.024	4	0	Median	1.4571	1.1793	NaN	1	0	Median	0.79248	0.91366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97801	1.0502	16.218	2	0	Median	418680000	205310000	213370000	64472000	29039000	35433000	98898000	49920000	48978000	0	0	0	255310000	126350000	128960000	20414	2887	19321	125538;125539;125540;125541	170177;170178;170179;170180;170181	170178			4	
GPNSVLPLYYR	0	Unmodified	1277.6768	0.67682195	1715	P50747	HLCS	Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.369	62.369	2	0.0019759	55519	160511_QHF_FH_JSI11i_3	74.162	66.883			1.1689	1.1201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1689	1.1201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18759000	7976000	10783000	0	0	0	0	0	0	18759000	7976000	10783000	0	0	0	20415	1715	19322	125542	170182	170182			1	
GPPASSPAPAPK	1	Unmodified	1075.5662	0.56620887	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	2	1	1	15.155	13.348	2	7.9652E-08	10871	160511_QHF_FH_JSI11i_1	137.95	121.75			0.97947	0.99501	4.4465	5	0	Median	1.1698	0.97735	NaN	1	0	Median	0.84058	0.97018	3.5735	2	0	Median	1.0815	1.0499	NaN	1	0	Median	0.97947	1.0448	NaN	1	0	Median	1366100000	697740000	668400000	334530000	156550000	177980000	323090000	177660000	145430000	360290000	185730000	174560000	348230000	177800000	170430000	20416	2723	19323	125543;125544;125545;125546;125547	170183;170184;170185;170186;170187;170188;170189;170190;170191	170183			9	
GPPCGPVNCNEK	1	Unmodified	1327.5649	0.56490502	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.684	14.23	2	0.010843	11757	160511_QHF_FH_JSI10i_1	47.228	42.399			0.82953	0.90465	46.996	4	1	Median	0.48022	0.38353	NaN	1	1	Median	0.69164	0.82059	NaN	1	0	Median	1.0216	0.99732	NaN	1	0	Median	0.99491	1.067	NaN	1	0	Median	152760000	86363000	66392000	25105000	17377000	7728200	45366000	27884000	17482000	42248000	23351000	18898000	40036000	17752000	22284000	20417	2244	19324	125548;125549;125550;125551	170192;170193;170194;170195	170194			4	
GPPDFSSDEEREPTPVLGSGAAAAGR	0	Unmodified	2569.2045	0.20447307	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							2	3	3	4	56.031	55.327	3	4.8961E-49	49826	160511_QHF_FH_JSI10i_1	190.37	190.37			1.0547	1.115	3.7782	12	2	Median	1.354	1.1262	0.0093448	2	0	Median	0.96351	1.1427	4.8698	3	0	Plateau	1.0964	1.0538	0.79684	3	0	Median	1.0511	1.1253	3.3335	4	2	Median	4557000000	2208700000	2348300000	865830000	372310000	493520000	1263400000	650120000	613320000	1132200000	545410000	586770000	1295600000	640900000	654660000	20418	1526;1527	19325	125552;125553;125554;125555;125556;125557;125558;125559;125560;125561;125562;125563	170196;170197;170198;170199;170200;170201;170202;170203;170204;170205;170206;170207;170208;170209;170210;170211;170212;170213;170214;170215;170216;170217;170218;170219;170220	170206			25	
GPPIEDAIASSDVLETASK	1	Unmodified	1898.9473	0.94730231	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	79.306	78.861	2	1.5172E-10	70076	160511_QHF_FH_JSI9i_1	130.24	113.29			0.99791	1.0149	15.018	5	4	Median	1.2959	1.0421	NaN	1	1	Median	1.1132	1.2575	NaN	1	1	Median	0.92781	0.88648	8.4483	2	2	Median	0.96923	1.0149	NaN	1	0	Median	96126000	45480000	50646000	19949000	7930100	12018000	13449000	5282700	8166600	42371000	21127000	21244000	20357000	11141000	9216600	20419	5610	19326	125564;125565;125566;125567;125568	170221;170222;170223;170224;170225;170226	170226			6	
GPPLGGGEGEAESADTMPFVMLTR	0	Unmodified	2418.1195	0.11954615	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				96.919	96.455	3	0.038188	85339	160511_QHF_FH_JSI9i_1	22.123	7.5095			1.5669	1.3134	NaN	1	1	Median	1.5669	1.3134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9290400	3371200	5919300	9290400	3371200	5919300	0	0	0	0	0	0	0	0	0	20420	4829	19327	125569	170227	170227			1	
GPPLREGEELVMDEEAYVLYHR	0	Unmodified	2601.2533	0.25333751	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		92.23	92.23	4	3.1642E-07	82224	160511_QHF_FH_JSI11i_3	96.131	88.938			0.82043	0.76629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82043	0.76629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31359000	19938000	11421000	0	0	0	0	0	0	31359000	19938000	11421000	0	0	0	20421	4350	19328	125570	170228	170228			1	
GPPNPNVEYIPFDEMK	1	Unmodified	1845.8607	0.86073591	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.993	77.52	2	9.8204E-08	70653	160511_QHF_FH_JSI12i_1	139.48	116.9			1.0197	0.99397	14.687	4	0	Median	0.97508	0.80907	NaN	1	0	Median	0.79027	0.94143	NaN	1	0	Median	1.0758	1.0494	NaN	1	0	Median	1.0664	1.1357	NaN	1	0	Median	282070000	134710000	147360000	88080000	41573000	46507000	75688000	41490000	34198000	58080000	23509000	34570000	60218000	28134000	32084000	20422	5118	19329	125571;125572;125573;125574	170229;170230;170231;170232;170233;170234;170235	170231			7	
GPPPHELR	0	Unmodified	901.477	0.47699993	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.5	0.5		2	2								1	1	2	8.0036	7.8845	2;3	0.019508	5929	160511_QHF_FH_JSI10i_2	40.882	19.91			1.0918	1.2258	31.887	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1245	1.3912	NaN	1	0	Median	1.5657	1.6008	NaN	1	0	Median	0.90624	0.91452	23.539	2	1	Median	316340000	149240000	167100000	0	0	0	77983000	34053000	43929000	75810000	24981000	50828000	162540000	90203000	72342000	20423	1401	19330	125575;125576;125577;125578	170236;170237;170238	170236			3	
GPPPPPGDENR	0	Unmodified	1131.5309	0.530886	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	10.714	10.195	2	7.7717E-05	7687	160511_QHF_FH_JSI9i_1	90.906	86.215			0.75783	0.7393	9.0095	3	1	Median	0.80193	0.6618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73591	0.76477	4.789	2	1	Median	216910000	130060000	86855000	89329000	52137000	37193000	0	0	0	0	0	0	127580000	77919000	49662000	20424	2412	19331	125579;125580;125581;125582	170239;170240;170241;170242	170242			4	
GPPPPPGDENREMDDPSVGPK	1	Unmodified	2186.9902	0.99024653	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.039	33.437	3	6.1849E-18	29275	160511_QHF_FH_JSI9i_1	107.06	102.19			0.96491	1.0061	5.8288	4	0	Linear	1.1183	0.89701	NaN	1	0	Median	0.84404	1.0017	NaN	1	0	Median	0.96531	0.93529	NaN	1	0	Median	0.96452	1.015	NaN	1	0	Median	1129000000	532120000	596900000	255650000	113460000	142190000	298510000	147530000	150980000	276230000	123750000	152480000	298630000	147380000	151260000	20425	2412	19332	125583;125584;125585;125586	170243;170244;170245;170246;170247;170248;170249;170250;170251;170252;170253;170254;170255;170256;170257;170258;170259	170257			17	
GPPPPPGDENREMDDPSVGPK	1	Oxidation (M)	2202.9852	0.98516116	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	1	1				By MS/MS	1	0	1												1	34.108	33.527	3	0.001588	30306	160511_QHF_FH_JSI12i_1	49.34	38.575			1.1779	1.2129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1779	1.2129	NaN	1	1	Median	54233000	17995000	36238000	0	0	0	0	0	0	0	0	0	54233000	17995000	36238000	20426	2412	19332	125587	170260	170260		1946	1	
GPPPPPTASEPTRR	0	Unmodified	1458.7579	0.75792582	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.83	6.18		1	2					3		2	2	1	1	19.261	14.181	3	0.00033603	12075	160511_QHF_FH_JSI10i_3	48.527	37.088			1.0043	1.0427	24.231	6	1	Median	0.94707	0.79916	35.375	2	1	Median	0.87013	1.0192	26.251	2	0	Median	1.101	1.0873	NaN	1	0	Median	0.98768	1.0593	NaN	1	0	Median	265070000	141240000	123830000	142760000	74469000	68292000	113040000	62560000	50481000	5883100	2569900	3313200	3381500	1642000	1739400	20427	203	19333	125588;125589;125590;125591;125592;125593	170261;170262;170263;170264;170265	170262			5	
GPPPSWASEPERPSILSASELK	1	Unmodified	2334.1856	0.18557552	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			71.611	70.141	3	0.0058771	57447	160511_QHF_FH_JSI9i_3	37.969	29.782			0.97415	0.93966	9.0019	2	0	Median	1.2064	1.0014	NaN	1	0	Median	0.78664	0.88171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57818000	27528000	30290000	35260000	16617000	18643000	22558000	10911000	11647000	0	0	0	0	0	0	20428	5646	19334	125594;125595;125596	170266;170267;170268;170269	170267			4	
GPPPSYGGSSR	0	Unmodified	1060.4938	0.49377221	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	10.401	8.1607	2	0.0045887	6457	160511_QHF_FH_JSI9i_1	54.416	23.343			0.88566	0.94964	15.15	4	2	Median	1.2768	1.0562	NaN	1	0	Median	0.78935	0.93185	NaN	1	0	Median	0.99371	0.96776	NaN	1	1	Median	0.7071	0.74046	NaN	1	1	Median	561800000	293400000	268400000	196330000	84125000	112200000	192450000	119010000	73444000	10739000	5281300	5458000	162280000	84986000	77297000	20429	1474	19335	125597;125598;125599;125600;125601	170270;170271;170272;170273;170274;170275;170276	170276			7	
GPPPTDPYGRPPPYDR	0	Unmodified	1780.8533	0.85328277	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	34.104	33.931	3	0.00033384	28921	160511_QHF_FH_JSI12i_2	46.964	24.489			1.4184	1.413	20.773	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3078	1.2577	16.465	2	0	Median	1.6039	1.6943	NaN	1	0	Median	101740000	46922000	54815000	0	0	0	0	0	0	83264000	39161000	44103000	18473000	7761100	10712000	20430	2746	19336	125602;125603;125604;125605	170277;170278;170279;170280;170281	170279			4	
GPPPTDPYGRPPPYDRGDYGPPGR	0	Unmodified	2580.2146	0.21458424	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			45.133	43.578	4	0.001516	36079	160511_QHF_FH_JSI10i_3	42.612	30.058			0.53242	0.61998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53242	0.61998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32843000	26194000	6649100	0	0	0	32843000	26194000	6649100	0	0	0	0	0	0	20431	2746	19337	125606	170282	170282			1	
GPPQEEEEEEDEEEEATKEDAEAPGIR	1	Unmodified	3041.2745	0.27452228	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.726	45.232	3	1.1466E-58	40974	160511_QHF_FH_JSI11i_1	206.4	205.63			0.94204	1.085	8.4756	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85552	0.9993	NaN	1	0	Median	0.94204	0.91587	NaN	1	0	Median	1.0463	1.085	NaN	1	0	Median	495460000	272590000	222870000	0	0	0	156250000	89907000	66341000	145440000	74366000	71070000	193770000	108310000	85459000	20432	1758	19338	125607;125608;125609	170283;170284;170285;170286	170284			4	
GPPQEEEEEEDEEEEATKEDAEAPGIRDHESL	1	Unmodified	3622.5191	0.51906266	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.19	0.39	13	3								2	6	4	4	51.651	51.064	3;4	6.5847E-106	46356	160511_QHF_FH_JSI12i_1	248.12	247.83			0.95529	0.93051	20.283	16	4	Median	1.0469	0.90766	4.022	2	1	Median	0.75524	0.89766	10.853	6	1	Median	0.9368	0.91027	28.239	4	1	Median	1.1585	1.2038	14.086	4	1	Median	3077700000	1629600000	1448100000	98353000	42088000	56266000	1310900000	720960000	589940000	795980000	436920000	359060000	872490000	429670000	442820000	20433	1758	19339	125610;125611;125612;125613;125614;125615;125616;125617;125618;125619;125620;125621;125622;125623;125624;125625	170287;170288;170289;170290;170291;170292;170293;170294;170295;170296;170297;170298;170299;170300;170301;170302;170303;170304;170305;170306;170307;170308;170309;170310	170295			24	
GPPQSPVFEGVYNNSR	0	Unmodified	1746.8325	0.83254733	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	54.072	53.26	2	2.8074E-05	46742	160511_QHF_FH_JSI9i_2	123.64	112.11			1.2658	1.318	16.476	8	5	Median	1.6419	1.374	27.39	2	1	Median	1.0557	1.278	3.5279	2	1	Median	1.1693	1.1502	24.928	2	1	Median	1.2946	1.3946	7.1616	2	2	Median	468030000	183100000	284930000	108150000	37980000	70168000	90553000	43087000	47466000	141790000	55719000	86071000	127540000	46315000	81227000	20434	3801	19340	125626;125627;125628;125629;125630;125631;125632;125633;125634	170311;170312;170313;170314;170315;170316;170317;170318;170319;170320;170321;170322	170318			12	
GPPSTPVPTQTQNPESR	0	Unmodified	1791.8751	0.87514042	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		30.568	29.958	2	2.5991E-05	26102	160511_QHF_FH_JSI9i_1	96.103	56.186			1.0845	1.0663	19.88	3	3	Median	1.036	0.8636	NaN	1	1	Median	1.1013	1.2849	NaN	1	1	Median	1.0845	1.0663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79552000	35235000	44318000	23235000	10296000	12938000	28944000	13856000	15089000	27373000	11083000	16290000	0	0	0	20435	478	19341	125635;125636;125637	170323;170324;170325	170325			3	
GPPVTPSSEK	1	Unmodified	997.50803	0.50802529	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				12.154	11.305	2	0.034343	8772	160511_QHF_FH_JSI9i_1	46.462	8.9036			0.98061	0.82633	NaN	1	1	Median	0.98061	0.82633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64450000	36448000	28002000	64450000	36448000	28002000	0	0	0	0	0	0	0	0	0	20436	3266	19342	125638	170326	170326			1	
GPPYAHK	1	Unmodified	768.39187	0.39187332	4641	Q9H0U3;Q13454	MAGT1;TUSC3	Magnesium transporter protein 1;Tumor suppressor candidate 3	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.3151	5.3628	2	0.030931	3078	160511_QHF_FH_JSI11i_3	53.71	27.883			0.61524	0.59484	104.86	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3344	1.2486	NaN	1	1	Median	0.28365	0.2834	NaN	1	0	Median	261720000	150580000	111140000	0	0	0	0	0	0	110510000	50790000	59716000	151220000	99790000	51427000	20437	4641	19343	125639;125640	170327;170328	170327			2	
GPQGVEDGDRPQPSSK	1	Unmodified	1652.7754	0.77542638	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	11.055	10.655	3	1.4429E-05	8548	160511_QHF_FH_JSI12i_1	98.507	87.237			0.76529	0.87163	3.8122	4	1	Linear	1.0926	0.89657	NaN	1	1	Median	0.7208	0.85225	NaN	1	0	Median	0.84715	0.82755	NaN	1	0	Median	0.85366	0.89145	NaN	1	0	Median	333150000	165390000	167760000	75031000	34991000	40039000	95922000	44684000	51238000	83161000	46023000	37138000	79038000	39692000	39346000	20438	4065	19344	125641;125642;125643;125644	170329;170330;170331;170332;170333	170329			5	
GPQHPPPPSGPEEPGEK	1	Unmodified	1735.8166	0.81656291	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.469	17.216	3	0.0011742	14640	160511_QHF_FH_JSI10i_1	53.861	44.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20439	4986	19345	125645	170334	170334			1	
GPQITGPSLEGDLGLK	1	Unmodified	1580.841	0.84098675	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	72.552	72.035	2	1.0298E-80	65512	160511_QHF_FH_JSI11i_1	246.53	202.22			0.8337	0.77558	16.08	4	2	Median	0.95732	0.79142	NaN	1	0	Median	0.53274	0.63176	NaN	1	1	Median	0.77795	0.76006	NaN	1	0	Median	0.89344	0.93456	NaN	1	1	Median	1103600000	596350000	507200000	216830000	110420000	106410000	260530000	168600000	91935000	388530000	206710000	181820000	237660000	110620000	127040000	20440	2286	19346	125646;125647;125648;125649;125650	170335;170336;170337;170338;170339;170340;170341;170342;170343	170336			9	
GPQLAAQNLGISLANLLLSK	1	Unmodified	2020.1681	0.16807497	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	102.58	102.51	2;3	2.0161E-160	91684	160511_QHF_FH_JSI11i_3	297.28	275.24			1.0107	1.0054	20.114	6	0	Median	1.2876	1.0478	NaN	1	0	Median	0.78018	0.87788	0.038192	2	0	Median	1.2775	1.2105	31.433	2	0	Median	0.99428	1.0429	NaN	1	0	Median	470970000	234740000	236230000	47524000	22942000	24582000	143460000	88280000	55178000	205340000	94320000	111020000	74649000	29197000	45453000	20441	901	19347	125651;125652;125653;125654;125655;125656	170344;170345;170346;170347;170348;170349;170350;170351	170345			8	
GPQLDVK	1	Unmodified	755.41775	0.41775372	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.304	15.86	2	0.020023	13784	160511_QHF_FH_JSI12i_1	60.972	0			0.74169	0.79279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74169	0.79279	NaN	1	1	Median	356480000	234030000	122450000	0	0	0	0	0	0	0	0	0	356480000	234030000	122450000	20442	3405	19348	125657	170352	170352			1	
GPQLFHMDPSGTFVQCDAR	0	Unmodified	2161.9673	0.96734302	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	2	4	3	69.54	68.851	2;3	1.3119E-42	61128	160511_QHF_FH_JSI11i_3	197.84	191.86			1.0377	1.0787	13.397	9	2	Median	1.2868	1.1002	2.7822	2	2	Median	0.92491	1.0948	3.133	2	0	Median	0.95993	0.95411	6.0428	3	0	Plateau	1.258	1.3425	8.2869	2	0	Median	1625600000	807780000	817850000	171130000	82268000	88857000	315680000	181420000	134260000	674810000	343850000	330960000	464010000	200240000	263770000	20443	1300	19349	125658;125659;125660;125661;125662;125663;125664;125665;125666;125667;125668	170353;170354;170355;170356;170357;170358;170359;170360;170361;170362;170363;170364;170365;170366;170367;170368	170354			16	
GPQLLALVEEVLPR	0	Unmodified	1532.8926	0.89262839	5145	Q9NZ53	PODXL2	Podocalyxin-like protein 2	yes	yes	0	0	0	0		By matching	By MS/MS		3	0			3								1	2		102.68	102.63	2;3	4.0331E-05	91809	160511_QHF_FH_JSI11i_3	117.98	97.945			0.91984	0.881	24.415	3	1	Median	NaN	NaN	NaN	0	0	Median	0.5965	0.70042	NaN	1	0	Median	1.0644	1.0026	18.289	2	1	Median	NaN	NaN	NaN	0	0	Median	75035000	36075000	38959000	0	0	0	9220600	5402100	3818500	65814000	30673000	35141000	0	0	0	20444	5145	19350	125669;125670;125671	170369;170370	170370			2	
GPQNAFFLVK	1	Unmodified	1119.6077	0.60767976	1308	P28347	TEAD1	Transcriptional enhancer factor TEF-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	1	3	65.351	64.572	2	4.3597E-06	55600	160511_QHF_FH_JSI12i_3	111.95	88.876			0.94361	0.93399	22.34	5	3	Median	0.77207	0.66474	NaN	1	1	Median	0.58964	0.73185	NaN	1	1	Median	0.94361	0.93399	NaN	1	0	Median	0.99585	1.0788	2.016	2	1	Median	344170000	184840000	159330000	38613000	22112000	16501000	48206000	28289000	19917000	80767000	42772000	37995000	176580000	91667000	84915000	20445	1308	19351	125672;125673;125674;125675;125676;125677;125678	170371;170372;170373;170374;170375;170376;170377	170377			7	
GPQNATDSYVHK	1	Unmodified	1315.6157	0.61567826	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	2	3	13.515	13.079	2;3	2.4922E-05	10230	160511_QHF_FH_JSI11i_2	109.42	93.165			0.94993	1.0886	20.422	7	0	Median	1.0375	0.87066	37.911	2	0	Median	0.94993	1.1801	NaN	1	0	Median	0.97663	0.97814	15.137	2	0	Median	1.0461	1.0905	4.3134	2	0	Median	388590000	186320000	202270000	84893000	41651000	43242000	60497000	33026000	27471000	145950000	63880000	82070000	97249000	47759000	49489000	20446	350	19352	125679;125680;125681;125682;125683;125684;125685;125686	170378;170379;170380;170381;170382;170383;170384;170385;170386;170387	170383			10	
GPQPPTVSPIR	0	Unmodified	1147.635	0.63495714	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.014	36.415	2	0.05171	32974	160511_QHF_FH_JSI12i_1	43.149	6.5791			1.1846	1.2161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1846	1.2161	NaN	1	1	Median	98259000	32394000	65866000	0	0	0	0	0	0	0	0	0	98259000	32394000	65866000	20447	1580	19353	125687	170388	170388			1	
GPQVALK	1	Unmodified	711.42792	0.42792448	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	16.245	15.679	2	0.0036275	12897	160511_QHF_FH_JSI9i_1	103.29	31.265			1.0913	1.1041	8.4503	6	0	Median	1.3208	1.1009	11.372	2	0	Median	0.90872	1.0797	11.331	2	0	Median	1.0686	1.0421	NaN	1	0	Median	1.1144	1.1911	NaN	1	0	Median	1008300000	486930000	521360000	247240000	111910000	135330000	279890000	155200000	124690000	220480000	98203000	122280000	260680000	121610000	139070000	20448	2286	19354	125688;125689;125690;125691;125692;125693	170389;170390;170391;170392;170393;170394	170394			6	
GPQVALKGSR	1	Acetyl (K)	1053.5931	0.59309232	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	33.949	25.063	2	0.030885	15005	160513_QHF_FH_JSI12Kac_4	47.187	23.232			0.67952	0.73233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67952	0.73233	NaN	1	0	Median	6185300	3690900	2494400	0	0	0	0	0	0	0	0	0	6185300	3690900	2494400	20449	2286	19355	125694	170395	170395			1	
GPQVQQPPPSNR	0	Unmodified	1303.6633	0.66329715	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.556	11.152	2	3.5523E-31	8651	160511_QHF_FH_JSI9i_1	185.14	164.27			1.0458	1.0469	4.5741	4	0	Median	1.3661	1.1305	NaN	1	0	Median	0.89598	1.0361	NaN	1	0	Median	1.0529	1.0184	NaN	1	0	Median	1.0387	1.0579	NaN	1	0	Median	358640000	161820000	196820000	94350000	38225000	56125000	99177000	46573000	52604000	78292000	31881000	46411000	86822000	45145000	41678000	20450	2674	19356	125695;125696;125697;125698	170396;170397;170398;170399;170400;170401;170402;170403;170404;170405;170406	170406			11	
GPQVSGELK	1	Unmodified	913.4869	0.48689592	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	18.88	16.067	2	0.00019124	13474	160511_QHF_FH_JSI10i_1	85.731	50.923			1.0056	1.0155	10.236	6	0	Median	1.2851	1.0577	NaN	1	0	Median	0.76789	0.91103	9.2181	2	0	Median	1.1231	1.1098	3.8599	2	0	Median	0.91245	0.97506	NaN	1	0	Median	1538900000	806130000	732820000	371450000	190420000	181030000	421130000	238380000	182750000	390910000	194470000	196440000	355450000	182860000	172590000	20451	2286	19357	125699;125700;125701;125702;125703;125704	170407;170408;170409;170410	170408			4	
GPQVSSALNLDTSK	1	Unmodified	1415.7256	0.72562264	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		55.768	46.192	2	0.0021589	24913	160513_QHF_FH_JSI11Kac_3	67.153	52.463			1.0717	1.0548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0717	1.0548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7962200	4220000	3742200	0	0	0	0	0	0	7962200	4220000	3742200	0	0	0	20452	2286	19358	125705	170411	170411			1	
GPQYGTVEK	1	Unmodified	977.48181	0.48181054	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.367	12.237	2	0.0029556	9798	160511_QHF_FH_JSI11i_1	72.325	37.501			0.66625	0.65008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66625	0.65008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	220720000	152880000	67839000	0	0	0	0	0	0	220720000	152880000	67839000	0	0	0	20453	5435	19359	125706	170412	170412			1	
GPSAAAKPK	2	Acetyl (K)	867.48142	0.48141661	3535	Q8N531	FBXL6	F-box/LRR-repeat protein 6	yes	yes	1	0	0	1		By MS/MS	By matching		13	0						2					1	1		13.097	5.7178	2	0.038189	5238	160513_QHF_FH_JSI10Kac_3	46.334	32.755			0.65428	0.69577	16.889	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67006	0.78403	NaN	1	0	Median	0.63888	0.61745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11848000	7040500	4807700	0	0	0	4483100	2383900	2099200	7365100	4656600	2708600	0	0	0	20454	3535	19360	125707;125708	170413	170413			1	
GPSAAGEQEPDK	1	Unmodified	1184.5309	0.53094558	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	8.6972	6.0427	2	2.1653E-33	5641	160511_QHF_FH_JSI12i_1	234.39	180.62			0.91903	0.91469	8.5604	6	4	Median	1.0781	0.8773	NaN	1	1	Median	0.91446	1.0856	NaN	1	1	Median	0.90448	0.87853	1.0229	2	1	Median	0.92677	0.9634	2.6558	2	1	Median	1777600000	825520000	952040000	432020000	179210000	252810000	464230000	235490000	228740000	403980000	199840000	204140000	477330000	210970000	266360000	20455	1712	19361	125709;125710;125711;125712;125713;125714	170414;170415;170416;170417;170418	170415			5	
GPSAAGEQEPDKESGASVDEVAR	1	Unmodified	2285.0408	0.04076178	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	27.322	26.969	3	3.606E-09	23858	160511_QHF_FH_JSI10i_1	90.193	81.374			0.99016	1.1127	22.886	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99016	1.1505	NaN	1	0	Median	0.79978	0.76196	NaN	1	0	Median	1.0858	1.1127	NaN	1	0	Median	121080000	57023000	64058000	0	0	0	49065000	26895000	22170000	38242000	17359000	20883000	33774000	12769000	21005000	20456	1712	19362	125715;125716;125717	170419;170420;170421;170422	170422			4	
GPSEAPSGQA	0	Unmodified	899.39847	0.39847484	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	8.6317	8.3336	2	0.013542	6162	160511_QHF_FH_JSI10i_1	43.808	37.353			0.96712	1.0672	13.436	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98809	1.1735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94659	0.97044	NaN	1	1	Median	106780000	53054000	53727000	0	0	0	59518000	27835000	31682000	0	0	0	47264000	25219000	22045000	20457	5119	19363	125718;125719	170423;170424	170424			2	
GPSENVSQEQFTASMSHLLK	1	Unmodified	2189.0423	0.042282105	3112	Q6P9B6	TLDC1	TLD domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	72.663	72.157	3	1.2694E-08	62586	160511_QHF_FH_JSI12i_3	99.407	90.615			0.97945	1.1997	24.698	5	3	Median	1.8029	1.5695	NaN	1	0	Median	0.97945	1.1997	NaN	1	1	Median	1.1319	1.1015	30.876	2	2	Median	0.91445	0.92595	NaN	1	0	Median	192410000	97044000	95370000	23994000	9191700	14802000	31684000	14931000	16753000	85435000	49719000	35716000	51300000	23201000	28099000	20458	3112	19364	125720;125721;125722;125723;125724;125725	170425;170426;170427;170428;170429;170430;170431	170431			7	
GPSFADMEVLYWTHVK	1	Unmodified	1878.8975	0.89745577	3054	Q6IBW4	NCAPH2	Condensin-2 complex subunit H2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	2	2	1	90.867	86.007	3	0.00029654	43343	160513_QHF_FH_JSI9Kac_6	67.416	53.258			0.8794	0.94562	15.094	5	1	Median	1.0837	0.94562	NaN	1	0	Median	0.75253	0.90019	15.888	2	0	Median	1.1292	1.0949	NaN	1	1	Median	0.73274	0.76505	NaN	1	0	Median	280110000	149460000	130650000	81924000	43301000	38623000	122860000	69182000	53680000	68374000	33813000	34560000	6947400	3161200	3786300	20459	3054	19365	125726;125727;125728;125729;125730;125731	170432;170433;170434;170435;170436;170437	170436			6	
GPSFDVQVGLHELLGHGSGK	1	Unmodified	2033.033	0.033038048	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	81.935	81.432	4	1.0327E-14	72426	160511_QHF_FH_JSI11i_3	150.58	136.99			0.89319	1.0367	9.7595	3	1	Median	NaN	NaN	NaN	0	0	Median	0.88091	1.0367	NaN	1	1	Median	1.0959	1.0467	NaN	1	0	Median	0.89319	0.87987	NaN	1	0	Median	346030000	181320000	164710000	0	0	0	44429000	26841000	17588000	82513000	29133000	53380000	219080000	125340000	93741000	20460	5119	19366	125732;125733;125734	170438;170439;170440;170441;170442;170443;170444	170440			7	
GPSFPEPLREEQDLER	0	Unmodified	1897.917	0.91700524	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		58.511	57.665	3	2.5666E-05	50963	160511_QHF_FH_JSI10i_2	92.38	70.54			1.0463	1.0229	5.3252	4	2	Median	1.1761	1.0065	6.4273	2	2	Median	0.88511	1.0805	NaN	1	0	Median	0.9681	0.99328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1005500000	487760000	517720000	514050000	232130000	281920000	266760000	147230000	119520000	224670000	108400000	116270000	0	0	0	20461	843	19367	125735;125736;125737;125738	170445;170446;170447;170448	170448			4	
GPSGCVESLEVTCR	0	Unmodified	1549.6865	0.68647672	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		39.865	39.509	2	0.00092562	35460	160511_QHF_FH_JSI10i_1	64.827	55.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20462	1609	19368	125739;125740	170449;170450	170450			2	
GPSGLLLYNGQK	1	Unmodified	1245.6717	0.67173657	139	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	49.788	49.55	2	9.8226E-05	42362	160511_QHF_FH_JSI12i_3	90.15	71.37			0.86192	0.87218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86192	0.87218	NaN	1	0	Median	29093000	14417000	14677000	0	0	0	0	0	0	0	0	0	29093000	14417000	14677000	20463	139	19369	125741;125742	170451;170452	170452			2	
GPSGLLTYTGK	1	Unmodified	1092.5815	0.58152458	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	1	3	44.03	43.237	2	2.5926E-05	36899	160511_QHF_FH_JSI12i_3	99.973	70.597			0.50335	0.57135	56.759	6	3	Median	0.89884	0.77769	NaN	1	1	Median	0.4206	0.51637	NaN	1	0	Median	0.46166	0.45929	NaN	1	1	Median	0.5488	0.63219	84.156	3	1	Median	661650000	399500000	262140000	97422000	54315000	43108000	82878000	58081000	24797000	100250000	63823000	36427000	381100000	223280000	157810000	20464	5309	19370	125743;125744;125745;125746;125747;125748	170453;170454;170455;170456;170457;170458;170459	170458			7	
GPSGLLVYQGK	1	Unmodified	1117.6132	0.61315906	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.02		4	4			2	3	4	3	4	6	6	4	50.619	44.2	2	2.7238E-27	23511	160513_QHF_FH_JSI9Kac_5	186.25	142.44			0.85769	0.92488	14.199	20	0	Median	1.1916	1.0102	14.719	4	0	Median	0.79779	0.96765	4.6385	6	0	Median	0.8767	0.85006	16.367	6	0	Median	0.87637	0.92488	9.7071	4	0	Median	5005800000	2453600000	2552100000	737810000	305370000	432430000	940820000	532300000	408520000	1526200000	753660000	772510000	1800900000	862280000	938670000	20465	764	19371	125749;125750;125751;125752;125753;125754;125755;125756;125757;125758;125759;125760;125761;125762;125763;125764;125765;125766;125767;125768	170460;170461;170462;170463;170464;170465;170466;170467;170468;170469;170470;170471;170472;170473;170474;170475;170476;170477;170478;170479;170480;170481;170482;170483;170484;170485;170486;170487;170488;170489;170490;170491	170468			32	
GPSGYGFNLHSDK	1	Unmodified	1377.6313	0.63132832	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	32.864	32.357	2;3	7.2048E-06	27309	160511_QHF_FH_JSI12i_3	118.13	112.29			1.0028	1.1698	60.14	5	1	Median	NaN	NaN	NaN	0	0	Median	0.9364	1.1209	14.099	2	0	Median	0.97937	0.89858	NaN	1	0	Median	2.1188	2.1616	86.834	2	1	Median	284930000	144720000	140210000	0	0	0	71956000	41600000	30356000	91029000	49305000	41724000	121950000	53816000	68132000	20466	198	19372	125769;125770;125771;125772;125773	170492;170493;170494;170495;170496;170497;170498;170499;170500	170498			9	
GPSGYGFNLHSDKSK	2	Acetyl (K)	1634.7689	0.76888444	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.799	38.11	3	0.0032995	20792	160513_QHF_FH_JSI11Kac_6	62.104	50.188			2.3683	2.3051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3683	2.3051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14213000	5578000	8635000	0	0	0	0	0	0	14213000	5578000	8635000	0	0	0	20467	198	19373	125774	170501	170501	108		1	
GPSHPLDLGTSSPNTSQIHWTPYR	0	Unmodified	2647.2779	0.27791278	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				63.957	62.455	3;4	0.0027406	51431	160511_QHF_FH_JSI9i_3	43.035	39.545			1.2135	0.96836	NaN	1	0	Median	1.2135	0.96836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53533000	29343000	24190000	53533000	29343000	24190000	0	0	0	0	0	0	0	0	0	20468	422	19374	125775;125776	170502;170503	170503			1	
GPSLASLEGEEDK	1	Unmodified	1330.6252	0.62523989	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.679	44.16	2	1.1474E-09	39633	160511_QHF_FH_JSI10i_1	111.52	104.93			0.89362	0.89759	3.1157	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97313	0.91759	NaN	1	1	Median	0.8206	0.87804	NaN	1	1	Median	123630000	69424000	54203000	0	0	0	0	0	0	63062000	29778000	33284000	60565000	39645000	20920000	20469	3869	19375	125777;125778;125779;125780	170504;170505;170506;170507	170506			4	
GPSLDIDTPDVNIEGPEGK	1	Unmodified	1951.9375	0.93746591	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	72.776	72.402	2;3	4.7572E-65	65891	160511_QHF_FH_JSI11i_1	273.61	250.37			11.06	11.723	36.556	3	3	Median	NaN	NaN	NaN	0	0	Median	6.5366	7.739	NaN	1	1	Median	16.586	16.039	NaN	1	1	Median	11.06	11.723	NaN	1	1	Median	1600500000	128680000	1471800000	0	0	0	217100000	27815000	189290000	638400000	47661000	590740000	744950000	53200000	691750000	20470	2286	19376	125781;125782;125783	170508;170509;170510	170508			3	
GPSLQGDLAVSGDIK	1	Unmodified	1455.7569	0.75692277	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	57.254	56.602	2	2.2617E-07	50984	160511_QHF_FH_JSI10i_1	89.26	73.994			0.79906	0.85529	24.202	4	4	Median	0.67901	0.55077	NaN	1	1	Median	0.7343	0.86037	NaN	1	1	Median	0.86953	0.85025	NaN	1	1	Median	0.90693	0.94745	NaN	1	1	Median	186690000	104270000	82418000	42763000	20469000	22295000	58099000	32044000	26055000	43757000	27073000	16684000	42072000	24688000	17384000	20471	2286	19377	125784;125785;125786;125787;125788;125789	170511;170512;170513;170514;170515;170516	170515			6	
GPSLQQR	0	Unmodified	784.41915	0.4191507	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.16	1	3	2				2			1	3	1	3	5.46	3.0901	2	0.0084796	2776	160511_QHF_FH_JSI12i_3	83.287	30.988			0.086749	0.099248	36.353	8	7	Median	0.12475	0.1035	NaN	1	1	Median	0.078484	0.093932	5.9959	3	3	Plateau	0.11561	0.10744	NaN	1	1	Median	0.09041	0.098437	58.679	3	2	Median	10136000000	9411000000	725100000	1498700000	1350800000	147950000	4911400000	4592600000	318800000	801770000	708750000	93024000	2924200000	2758800000	165330000	20472	4561	19378	125790;125791;125792;125793;125794;125795;125796;125797	170517;170518;170519;170520;170521;170522;170523;170524	170524			8	
GPSNAFFLVK	1	Unmodified	1078.5811	0.58113065	2684	Q15561	TEAD4	Transcriptional enhancer factor TEF-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.679	63.394	2	0.0032426	54633	160511_QHF_FH_JSI12i_3	70.363	46.407			1.5876	1.5926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5876	1.5926	NaN	1	1	Median	52742000	16019000	36723000	0	0	0	0	0	0	0	0	0	52742000	16019000	36723000	20473	2684	19379	125798	170525	170525			1	
GPSSDVEK	1	Unmodified	817.38176	0.38176214	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	5.6785	1.8686	2	0.0033453	3161	160511_QHF_FH_JSI12i_1	73.248	39.698			0.87802	0.85477	17.973	6	1	Median	1.1191	0.91931	NaN	1	0	Median	0.97806	1.1463	NaN	1	0	Median	0.89293	0.87505	18.83	2	1	Median	0.69763	0.75317	7.6018	2	0	Median	925640000	473210000	452430000	315050000	139940000	175110000	5289400	2780000	2509500	308010000	167950000	140070000	297290000	162550000	134750000	20474	2147	19380	125799;125800;125801;125802;125803;125804;125805;125806	170526;170527;170528;170529;170530;170531;170532;170533;170534;170535	170529			10	
GPSSEAMHVGHLIPFIFTK	1	Oxidation (M)	2083.0561	0.056081676	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	2	3	2	3	80.041	76.926	3;4	1.3698E-05	70338	160511_QHF_FH_JSI11i_3	78.674	74.924			0.97619	0.91438	12.185	9	0	Median	1.0896	0.91887	6.9181	2	0	Median	0.75692	0.99075	12.797	3	0	Plateau	0.97781	0.91918	0.74075	2	0	Median	0.98693	1.0597	23.2	2	0	Median	575550000	293580000	281980000	59961000	27743000	32218000	259410000	141620000	117790000	199030000	95315000	103710000	57151000	28894000	28257000	20475	1226	19381	125807;125808;125809;125810;125811;125812;125813;125814;125815;125816	170536;170537;170538;170539;170540;170541;170542;170543;170544;170545;170546;170547;170548;170549	170536		858	13	
GPSSEAMHVGHLIPFIFTK	1	Unmodified	2067.0612	0.061167054	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	4.75			37						7	23	12	5	4	91.574	89.528	3;4	1.5775E-18	42213	160513_QHF_FH_JSI10Kac_6	139.11	130.32			1.0044	0.87776	20.66	41	8	Median	1.0621	0.85868	14.426	21	7	Median	0.75215	0.85762	31.455	11	1	Median	1.0208	0.9816	7.7088	5	0	Median	0.90449	0.92659	8.2332	4	0	Median	5159300000	2651300000	2508100000	1476800000	696030000	780800000	1439300000	846870000	592400000	980030000	462990000	517030000	1263200000	645390000	617820000	20476	1226	19381	125817;125818;125819;125820;125821;125822;125823;125824;125825;125826;125827;125828;125829;125830;125831;125832;125833;125834;125835;125836;125837;125838;125839;125840;125841;125842;125843;125844;125845;125846;125847;125848;125849;125850;125851;125852;125853;125854;125855;125856;125857;125858;125859;125860	170550;170551;170552;170553;170554;170555;170556;170557;170558;170559;170560;170561;170562;170563;170564;170565;170566;170567;170568;170569;170570;170571;170572;170573;170574;170575;170576;170577;170578;170579;170580;170581;170582;170583;170584;170585;170586;170587;170588;170589;170590;170591;170592;170593;170594;170595;170596;170597;170598;170599;170600;170601;170602;170603;170604;170605;170606;170607;170608;170609;170610;170611;170612;170613;170614;170615;170616;170617;170618;170619;170620;170621;170622;170623;170624;170625	170625			71	
GPSSEGPEEEDGEGFSFK	1	Unmodified	1883.7697	0.76973188	2132	P84157	MXRA7	Matrix-remodeling-associated protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	48.558	47.878	2	4.9411E-117	42574	160511_QHF_FH_JSI9i_1	271.56	264.51			0.9195	1.0204	5.4052	4	0	Linear	1.1412	0.9443	NaN	1	0	Median	0.88468	1.0301	NaN	1	0	Median	0.94984	0.91033	NaN	1	0	Median	0.89013	0.93138	NaN	1	0	Median	752950000	381660000	371290000	197650000	92760000	104890000	240690000	129800000	110890000	151530000	81669000	69866000	163070000	77427000	85642000	20477	2132	19382	125861;125862;125863;125864;125865	170626;170627;170628;170629;170630;170631;170632;170633;170634;170635;170636;170637	170636			12	
GPSSVEDIK	1	Unmodified	930.46583	0.46582612	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.86	4	4	2		3	3	4	2		4	5	6	7	20.945	16.215	2	5.9499E-17	11222	160513_QHF_FH_JSI11Kac_4	172.21	98.086			0.94608	0.94894	15.304	22	1	Median	1.0389	0.86541	13.287	4	1	Median	0.78624	0.94539	13.071	5	0	Median	1.0859	1.0511	14.421	6	0	Median	0.92491	0.96197	18.225	7	0	Median	50130000000	25862000000	24268000000	11708000000	5641100000	6066400000	12606000000	6944800000	5660700000	11291000000	6059100000	5231600000	14526000000	7217000000	7309000000	20478	857	19383	125866;125867;125868;125869;125870;125871;125872;125873;125874;125875;125876;125877;125878;125879;125880;125881;125882;125883;125884;125885;125886;125887	170638;170639;170640;170641;170642;170643;170644;170645;170646;170647;170648;170649;170650;170651;170652;170653;170654;170655;170656;170657;170658;170659;170660;170661;170662;170663;170664;170665;170666;170667;170668;170669;170670;170671;170672;170673;170674;170675;170676;170677;170678;170679;170680;170681	170657			44	
GPSSVEDIKAK	2	Acetyl (K)	1171.6085	0.60846762	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	0.629					3	5	1			1	2	3	3	37.184	27.239	2;3	1.8119E-26	16885	160513_QHF_FH_JSI10Kac_3	175.86	132.05			0.42354	0.45119	78.587	9	1	Median	0.67948	0.5549	NaN	1	0	Median	1.0927	1.3118	4.8447	2	0	Median	0.33003	0.32614	69.828	3	1	Plateau	0.42354	0.42523	4.1872	3	0	Plateau	440550000	293620000	146930000	43919000	27265000	16654000	95208000	43997000	51211000	201510000	152750000	48761000	99919000	69614000	30305000	20479	857	19384	125888;125889;125890;125891;125892;125893;125894;125895;125896	170682;170683;170684;170685;170686;170687;170688;170689;170690	170689	546		9	
GPSTENQEAK	1	Unmodified	1059.4833	0.4832671	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	1	3	4.7405	2.6211	2	9.4003E-05	2297	160511_QHF_FH_JSI12i_1	98.254	58.608			0.86894	0.9506	17.126	4	1	Linear	0.93869	0.76718	NaN	1	0	Median	0.86273	1.0188	NaN	1	0	Median	0.73497	0.69582	NaN	1	0	Median	0.8752	0.91374	NaN	1	1	Median	372970000	213170000	159790000	61563000	32838000	28726000	143720000	82813000	60910000	2436500	1317700	1118800	165240000	96205000	69038000	20480	3838	19385	125897;125898;125899;125900;125901;125902	170691;170692;170693;170694;170695	170692			4	
GPSTEYGFYHDFFLGK	1	Unmodified	1863.8468	0.84680041	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7	6.38		3	3						3	1	1	3	4	81.896	78.144	2;3	5.9581E-16	70594	160511_QHF_FH_JSI12i_3	138.57	128.65			1.1911	1.0086	11.596	8	3	Plateau	1.2024	1.0285	NaN	1	0	Median	1.0222	1.2426	NaN	1	1	Median	1.1239	1.0911	9.4623	3	2	Plateau	1.1911	1.1989	13.314	3	0	Plateau	420690000	208600000	212090000	33476000	16647000	16829000	57937000	29058000	28879000	107250000	50412000	56838000	222030000	112490000	109540000	20481	4495	19386	125903;125904;125905;125906;125907;125908;125909;125910;125911	170696;170697;170698;170699;170700;170701;170702;170703	170702			8	
GPSVDWGK	1	Unmodified	844.40792	0.40791731	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.859	25.556	2	0.023809	22489	160511_QHF_FH_JSI10i_1	53.968	36.728			0.84294	0.97739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84294	0.97739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102110000	57988000	44121000	0	0	0	102110000	57988000	44121000	0	0	0	0	0	0	20482	2772	19387	125912	170704	170704			1	
GPSWDPFR	0	Unmodified	960.44537	0.44536545	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.527	57.868	2	0.00050213	50235	160511_QHF_FH_JSI11i_2	106.14	79.011			0.90498	0.95018	7.0898	6	0	Median	1.1233	0.95869	NaN	1	0	Median	0.76663	0.9376	NaN	1	0	Median	0.90204	0.86995	11.215	2	0	Median	0.91349	0.96497	0.23043	2	0	Median	1055400000	551980000	503440000	150160000	72737000	77419000	136720000	80858000	55863000	425980000	223920000	202060000	342570000	174470000	168100000	20483	814	19388	125913;125914;125915;125916;125917;125918	170705;170706;170707;170708;170709;170710;170711;170712;170713;170714;170715;170716	170711			12	
GPSWDPFRDWYPHSR	0	Unmodified	1901.8598	0.85976513	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	1	2	78.763	70.485	3;4	1.4885E-07	37779	160513_QHF_FH_JSI9Kac_6	113.29	109.74			1.3111	1.3841	19.645	8	0	Median	1.9003	1.6374	25.651	3	0	Median	1.2069	1.4319	7.6136	2	0	Median	1.3248	1.2192	NaN	1	0	Median	1.2795	1.3493	3.3538	2	0	Median	774720000	345770000	428950000	167920000	64546000	103370000	429450000	202180000	227260000	60178000	27704000	32474000	117180000	51332000	65843000	20484	814	19389	125919;125920;125921;125922;125923;125924;125925;125926	170717;170718;170719;170720;170721;170722;170723;170724;170725;170726;170727	170718			11	
GPSYEDLYTQNVVINMDDQEDLHR	0	Unmodified	2850.2767	0.27665173	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			78.119	77.956	3	1.5497E-09	70752	160511_QHF_FH_JSI10i_1	99.11	95.955			0.74066	0.87009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74066	0.87009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16539000	11364000	5175100	0	0	0	16539000	11364000	5175100	0	0	0	0	0	0	20485	1314	19390	125927	170728	170728			1	
GPSYGLSAEVK	1	Unmodified	1106.5608	0.56078914	4268	Q99439	CNN2	Calponin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	34.548	34.023	2	0.00095352	30806	160511_QHF_FH_JSI11i_1	67.207	11.193			1.1516	1.1422	47.292	5	1	Median	1.5135	1.2824	NaN	1	0	Median	0.73519	0.80384	NaN	1	0	Median	1.6961	1.7024	56.438	2	1	Median	0.77472	0.7976	NaN	1	0	Median	27612000000	11085000000	16528000000	54729000	19958000	34771000	8774100000	4054900000	4719200000	10301000000	3059400000	7241700000	8482100000	3950200000	4531900000	20486	4268	19391	125928;125929;125930;125931;125932;125933	170729;170730;170731;170732;170733;170734;170735	170729			7	
GPTAAQAK	1	Unmodified	742.39735	0.39735263	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	2.337	2.0439	2	0.0007303	1133	160511_QHF_FH_JSI10i_1	98.997	59.778			0.7273	0.74821	55.841	5	1	Median	0.99265	0.82822	NaN	1	0	Median	1.1412	1.3345	88.008	2	1	Median	0.64188	0.6304	NaN	1	0	Median	0.7273	0.74821	NaN	1	0	Median	320160000	159260000	160900000	23473000	11689000	11784000	130000000	68384000	61611000	94960000	44325000	50634000	71727000	34860000	36867000	20487	455	19392	125934;125935;125936;125937;125938	170736;170737;170738;170739;170740;170741;170742;170743;170744	170743			9	
GPTEADELMK	1	Oxidation (M)	1105.4961	0.49613997	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.73	7				2	3				2	3	4	3	24.276	20.874	2	5.8545E-06	10959	160513_QHF_FH_JSI11Kac_3	110.76	97.768			0.94754	1.0209	25.75	12	1	Median	1.5046	1.2338	3.5311	2	0	Median	0.86494	1.0066	29.689	3	1	Median	1.0545	1.0342	11.305	4	0	Median	0.86871	0.95291	37.723	3	0	Median	1310500000	631690000	678820000	388680000	164470000	224210000	167740000	74652000	93089000	443310000	221940000	221370000	310780000	170630000	140150000	20488	1000	19393	125939;125940;125941;125942;125943;125944;125945;125946;125947;125948;125949;125950	170745;170746;170747;170748;170749;170750;170751;170752;170753;170754;170755;170756;170757	170750		577	13	
GPTEADELMK	1	Unmodified	1089.5012	0.50122535	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	2	3	2	34.329	30.931	2	5.2951E-11	27357	160511_QHF_FH_JSI10i_1	147.2	131			0.87943	0.94753	38.332	9	2	Median	1.2471	1.0041	81.892	2	1	Median	0.8229	0.96668	14.144	2	0	Median	0.97131	0.96102	48.788	3	1	Median	0.87358	0.94212	0.81103	2	0	Median	6557900000	3040600000	3517300000	2093800000	909840000	1184000000	1413500000	730590000	682950000	1755900000	870620000	885320000	1294600000	529510000	765080000	20489	1000	19393	125951;125952;125953;125954;125955;125956;125957;125958;125959	170758;170759;170760;170761;170762;170763;170764;170765;170766;170767;170768;170769;170770;170771;170772	170766			15	
GPTEADELMKR	1	Acetyl (K)	1287.6129	0.61290107	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	1	2	47.826	38.202	2	0.00045853	21224	160513_QHF_FH_JSI10Kac_4	98.254	83.76			0.89052	1.0289	30.607	5	0	Median	NaN	NaN	NaN	0	0	Median	0.9237	1.0885	7.9626	2	0	Median	0.54686	0.5396	NaN	1	0	Median	0.94697	1.0103	9.8171	2	0	Median	35110000	20395000	14716000	0	0	0	11440000	6036800	5403500	8702500	5774600	2927900	14967000	8583100	6384000	20490	1000	19394	125960;125961;125962;125963;125964	170773;170774;170775;170776;170777	170773	794		5	
GPTEAVGYFLYNLIDSMSDSEVQAK	1	Unmodified	2733.2844	0.28436287	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	3	2	1	101.29	95.631	3	6.1851E-43	50163	160513_QHF_FH_JSI12Kac_6	172.61	166.99			1.0044	0.93198	16.908	6	2	Median	1.1624	0.979	NaN	1	0	Median	0.61949	0.73116	7.3463	2	2	Median	1.0044	0.93198	0.36469	2	0	Median	1.0526	1.1053	NaN	1	0	Median	872880000	507720000	365160000	127820000	65231000	62593000	378290000	241350000	136940000	164510000	87496000	77013000	202260000	113640000	88617000	20491	1544	19395	125965;125966;125967;125968;125969;125970;125971	170778;170779;170780;170781;170782;170783;170784;170785;170786;170787;170788	170786			11	
GPTISLTQIV	0	Unmodified	1027.5914	0.59136099	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	88.647	88.208	2	1.2525E-05	80487	160511_QHF_FH_JSI11i_1	102.72	82.199			0.9372	0.91792	8.0429	4	0	Median	1.1066	0.91418	NaN	1	0	Median	0.69738	0.82195	NaN	1	0	Median	1.0225	0.99999	NaN	1	0	Median	0.85904	0.92167	NaN	1	0	Median	199930000	102440000	97499000	46304000	24268000	22035000	52571000	32563000	20008000	57139000	25491000	31648000	43921000	20113000	23807000	20492	2721	19396	125972;125973;125974;125975;125976	170789;170790;170791;170792;170793;170794;170795;170796;170797;170798	170790			10	
GPTPEEAIQK	1	Unmodified	1068.5451	0.54513908	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.155	21.628	2	0.00017566	18254	160511_QHF_FH_JSI9i_1	82.645	71.779			0.92439	0.92318	10.294	4	0	Median	1.0803	0.89985	NaN	1	0	Median	0.88257	1.0177	NaN	1	0	Median	0.96819	0.94712	NaN	1	0	Median	0.78446	0.79702	NaN	1	0	Median	351180000	189090000	162090000	97747000	41082000	56666000	85953000	53806000	32147000	85097000	50408000	34689000	82381000	43796000	38585000	20493	4534	19397	125977;125978;125979;125980	170799;170800;170801;170802;170803;170804;170805	170804			7	
GPTPFNQNQLHQLR	0	Unmodified	1648.8434	0.84338678	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			43.012	41.46	3	0.00023937	33794	160511_QHF_FH_JSI9i_3	63.185	50.393			1.1028	0.9065	19.892	3	3	Plateau	1.0599	0.87175	5.5281	2	2	Median	0.51125	0.62183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	359670000	182840000	176820000	278720000	127250000	151480000	80940000	55594000	25346000	0	0	0	0	0	0	20494	1737	19398	125981;125982;125983	170806;170807;170808	170808			3	
GPTPGQAPAGGAGAEGK	1	Unmodified	1421.6899	0.68990583	4185	Q96NU1	SAMD11	Sterile alpha motif domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.768	13.33	2	8.0959E-08	10658	160511_QHF_FH_JSI9i_1	129.54	107.79			0.86685	0.8352	13.375	4	3	Median	1.004	0.81503	NaN	1	1	Median	0.86031	1.0226	NaN	1	0	Median	0.87344	0.85587	NaN	1	1	Median	0.71942	0.74402	NaN	1	1	Median	166880000	85915000	80961000	48673000	21578000	27094000	43410000	24459000	18952000	44008000	22806000	21202000	30786000	17072000	13714000	20495	4185	19399	125984;125985;125986;125987	170809;170810;170811;170812	170812			4	
GPTPKPPGVILPMMPAK	2	Unmodified	1729.9623	0.96230463	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		71.93	71.192	3	0.0029967	63291	160511_QHF_FH_JSI11i_3	52.52	35.835			0.96449	0.82684	6.1216	2	2	Median	0.96612	0.79181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96286	0.86341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79102000	43071000	36031000	31422000	19796000	11626000	0	0	0	47681000	23275000	24406000	0	0	0	20496	11	19400	125988;125989	170813;170814	170813			2	
GPTSQESQLNAMK	1	Unmodified	1389.6558	0.65582851	4005	Q96CB8	INTS12	Integrator complex subunit 12	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.119	23.957	2	0.0046874	20956	160511_QHF_FH_JSI11i_1	54.486	40.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20497	4005	19401	125990	170815	170815			1	
GPTSTSIDNIDGTPVRDER	0	Unmodified	2028.9712	0.97122565	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.351	38.351	3	0.021799	33762	160511_QHF_FH_JSI11i_3	33.405	26.635			1.4311	1.3043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4311	1.3043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40690000	10594000	30096000	0	0	0	0	0	0	40690000	10594000	30096000	0	0	0	20498	2984	19402	125991	170816	170816			1	
GPTSYYYMLPMK	1	Unmodified	1449.6672	0.66724482	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.71	2	4	3					3	4	4	4	6	2	75.863	71.33	2	2.0298E-26	38650	160513_QHF_FH_JSI10Kac_6	161.63	138.26			1.003	0.98485	21.148	14	6	Median	1.0015	0.86	10.521	3	2	Median	0.94823	1.1263	22.527	3	1	Median	1.0083	0.98485	24.466	6	3	Median	1.0494	1.1472	7.987	2	0	Median	506980000	247510000	259470000	54561000	26904000	27657000	147800000	76213000	71582000	197470000	91328000	106140000	107150000	53064000	54084000	20499	4545	19403	125992;125993;125994;125995;125996;125997;125998;125999;126000;126001;126002;126003;126004;126005;126006;126007	170817;170818;170819;170820;170821;170822;170823;170824;170825;170826;170827;170828;170829;170830;170831;170832;170833;170834;170835;170836;170837;170838	170838			21	
GPTSYYYMLPMK	1	Oxidation (M)	1465.6622	0.66215945	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	72.026	61.384	2	0.011277	30671	160513_QHF_FH_JSI10Kac_5	48.283	45.431			1.073	1.0622	14.747	4	0	Median	1.047	0.87318	NaN	1	0	Median	0.8808	1.0512	NaN	1	0	Median	1.0997	1.0733	NaN	1	0	Median	1.1756	1.2515	NaN	1	0	Median	13189000	6297900	6891600	3103700	1582400	1521300	3758300	1871100	1887200	4198100	1642100	2556000	2129400	1202200	927220	20500	4545	19403	126008;126009;126010;126011	170839;170840;170841;170842;170843	170843		2491;2492	5	
GPTVGGGLPGIGVQGLEGNLQMPGIK	1	Unmodified	2445.305	0.30497915	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1							1	1	2	2	100.93	100.85	3	7.9598E-32	91534	160511_QHF_FH_JSI10i_1	150.09	136.08			0.97408	0.95755	17.11	5	1	Median	1.0741	0.92102	NaN	1	0	Median	0.97408	1.1471	NaN	1	0	Median	0.93009	0.90358	8.204	2	1	Median	1.2639	1.2946	NaN	1	0	Median	486740000	242690000	244050000	108930000	52124000	56803000	89461000	45739000	43722000	150490000	81285000	69202000	137870000	63543000	74323000	20501	2286	19404	126012;126013;126014;126015;126016;126017	170844;170845;170846;170847;170848;170849	170847			5	
GPVAGWINALEAYQK	1	Unmodified	1615.8358	0.83584179	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	3	2	92.695	92.17	2;3	5.9614E-07	75669	160511_QHF_FH_JSI9i_3	137.89	124.23			0.96829	0.89386	7.4624	10	7	Median	1.0018	0.8191	4.6005	3	2	Median	0.75729	0.89424	1.2396	2	0	Median	0.98486	0.91383	4.3771	3	3	Median	0.83135	0.83587	11.388	2	2	Median	794470000	428080000	366390000	183920000	96077000	87843000	112530000	69921000	42609000	389860000	202030000	187830000	108160000	60050000	48111000	20502	4160	19405	126018;126019;126020;126021;126022;126023;126024;126025;126026;126027	170850;170851;170852;170853;170854;170855;170856;170857;170858;170859;170860;170861;170862;170863	170858			14	
GPVEGYEENEEFLR	0	Unmodified	1666.7475	0.74748029	5324	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	54.531	53.719	2	9.4429E-15	48799	160511_QHF_FH_JSI11i_1	161.48	137.39			0.95924	0.96596	11.764	8	1	Median	1.0199	0.8572	12.962	2	0	Median	0.76885	0.92574	7.8108	2	0	Median	1.0479	1.0265	10.395	2	1	Median	0.98517	1.0545	9.1274	2	0	Median	1622600000	838970000	783580000	266360000	129870000	136490000	517050000	288650000	228410000	435420000	214350000	221070000	403720000	206100000	197610000	20503	5324	19406	126028;126029;126030;126031;126032;126033;126034;126035	170864;170865;170866;170867;170868;170869;170870;170871;170872;170873;170874;170875;170876	170865			13	
GPVFAPPYEPLPENVK	1	Unmodified	1752.9087	0.90867238	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								4	3	2	3	76.867	76.249	2;3	6.4165E-15	69581	160511_QHF_FH_JSI12i_1	190.15	140.8			0.91186	0.85402	17.347	12	7	Median	1.0979	0.90358	8.5729	4	3	Median	0.7087	0.84352	24.378	3	2	Median	0.75751	0.73839	2.1408	2	1	Median	0.82622	0.86117	24.392	3	1	Median	829470000	432920000	396550000	186660000	92061000	94599000	215430000	101050000	114380000	166170000	87309000	78858000	261210000	152500000	108710000	20504	998	19407	126036;126037;126038;126039;126040;126041;126042;126043;126044;126045;126046;126047	170877;170878;170879;170880;170881;170882;170883;170884;170885;170886;170887	170879			11	
GPVGLEGLLTTK	1	Unmodified	1183.6812	0.68123863	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.17	3	3	3				1	4		3	4	3	4	76.001	71.793	2	0.00011611	64474	160511_QHF_FH_JSI9i_2	106.4	86.07			0.93027	0.93402	10.101	14	0	Median	0.99617	0.84522	11.403	3	0	Median	0.77068	0.9262	7.9242	4	0	Median	1.0166	1.0121	4.9744	3	0	Median	0.92653	0.99925	5.3417	4	0	Median	1051000000	534700000	516260000	190290000	78338000	111950000	340110000	186420000	153690000	412510000	210920000	201590000	108050000	59027000	49024000	20505	1837	19408	126048;126049;126050;126051;126052;126053;126054;126055;126056;126057;126058;126059;126060;126061	170888;170889;170890;170891;170892;170893;170894;170895;170896;170897;170898;170899;170900;170901;170902	170895			15	
GPVGTVSEAQLAR	0	Unmodified	1283.6834	0.68336389	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			2	3	3	3	36.602	35.109	2	8.1639E-67	30033	160511_QHF_FH_JSI11i_2	279.64	254.8			1.0841	1.1615	16.042	11	2	Median	1.4383	1.1996	3.6612	2	0	Median	0.99545	1.1615	9.4774	3	0	Median	1.1761	1.08	18.818	3	1	Median	1.234	1.3465	28.745	3	1	Plateau	1447600000	656180000	791370000	272400000	120170000	152230000	337790000	177310000	160480000	478250000	205810000	272440000	359120000	152890000	206230000	20506	5161	19409	126062;126063;126064;126065;126066;126067;126068;126069;126070;126071;126072	170903;170904;170905;170906;170907;170908;170909;170910;170911;170912;170913;170914;170915	170912			13	
GPVHIVHSENWVVYQYWNTK	1	Unmodified	2455.2073	0.20731402	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	77.084	68.356	3;4	2.9144E-26	35832	160513_QHF_FH_JSI12Kac_6	157.85	134.92			1.1062	1.1078	26.228	7	3	Median	0.81756	0.70243	0.60582	2	1	Median	0.92177	1.1015	NaN	1	1	Median	1.1694	1.1389	3.9152	2	1	Median	1.1756	1.2661	9.6388	2	0	Median	1441100000	761730000	679390000	515790000	279510000	236280000	613700000	348430000	265260000	156430000	63022000	93407000	155210000	70763000	84445000	20507	3562	19410	126073;126074;126075;126076;126077;126078;126079	170916;170917;170918;170919;170920;170921;170922;170923;170924	170923			9	
GPVKPTGGPGGGGTQTQQQMNQLK	2	Unmodified	2365.1808	0.18084127	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.67	4.64		2	3					1		2	2	2		30.843	28.402	3	3.1475E-42	23078	160511_QHF_FH_JSI9i_3	192.63	178.02			0.92446	0.87627	9.1645	6	1	Median	1.0025	0.84427	10.688	2	0	Median	0.72521	0.87814	14.123	2	1	Median	0.93042	0.89499	8.4179	2	0	Median	NaN	NaN	NaN	0	0	Median	370830000	212370000	158470000	194750000	98107000	96644000	124960000	80383000	44574000	51127000	33879000	17248000	0	0	0	20508	1271	19411	126080;126081;126082;126083;126084;126085	170925;170926;170927;170928;170929;170930;170931;170932;170933;170934;170935;170936;170937;170938	170933			14	
GPVKPTGGPGGGGTQTQQQMNQLK	2	Oxidation (M)	2381.1758	0.17575589	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			4							3	1			19.64	18.438	3	4.0832E-07	14739	160511_QHF_FH_JSI9i_3	67.76	55.447			1.2276	1.006	53.623	2	1	Median	1.2276	1.006	53.623	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60540000	25209000	35331000	60540000	25209000	35331000	0	0	0	0	0	0	0	0	0	20509	1271	19411	126086;126087;126088;126089	170939;170940;170941;170942	170941		907	4	
GPVLQLHDLK	1	Unmodified	1118.6448	0.64479354	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	2	2	3	43.928	43.189	2;3	6.6305E-14	36760	160511_QHF_FH_JSI12i_3	155.84	122.29			0.9823	1.7531	51.376	7	2	Linear	1.1298	0.91691	NaN	1	0	Median	0.53642	0.60492	81.751	2	1	Median	1.3364	1.2414	44.21	2	0	Median	1.106	1.1416	31.737	2	1	Median	1397700000	674620000	723030000	90971000	44923000	46048000	153890000	80613000	73275000	482270000	219050000	263220000	670520000	330040000	340490000	20510	1554	19412	126090;126091;126092;126093;126094;126095;126096;126097	170943;170944;170945;170946;170947;170948;170949;170950;170951;170952;170953;170954;170955	170953			13	
GPVLQLHDLKR	1	Acetyl (K)	1316.7565	0.75646926	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		60.805	51.737	3	0.0031456	28045	160513_QHF_FH_JSI11Kac_6	83.314	73.556			0.69301	0.74153	189.87	2	1	Median	NaN	NaN	NaN	0	0	Median	2.4723	2.8393	NaN	1	1	Median	0.19426	0.19366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39416000	29676000	9740400	0	0	0	4712900	729330	3983600	34703000	28947000	5756800	0	0	0	20511	1554	19413	126098;126099	170956;170957	170956	1567		2	
GPVNYNVTTEFEK	1	Unmodified	1496.7147	0.7147236	3447	Q8IXQ4	GPALPP1	GPALPP motifs-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.392	54.734	2	0.00015854	49844	160511_QHF_FH_JSI12i_1	107.03	80.909			1.0243	0.98856	18.089	4	1	Median	1.0349	0.8414	NaN	1	0	Median	0.81694	0.94923	NaN	1	0	Median	1.3473	1.2922	NaN	1	0	Median	1.0139	1.0295	NaN	1	1	Median	160890000	78064000	82824000	35313000	15458000	19855000	49177000	24384000	24793000	47682000	23680000	24002000	28716000	14543000	14174000	20512	3447	19414	126100;126101;126102;126103	170958;170959;170960;170961;170962;170963	170960			6	
GPVPAKPTVLFEK	2	Unmodified	1381.7969	0.79693709	3017	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.446	51.211	3	0.048575	43767	160511_QHF_FH_JSI12i_3	32.478	23.657			1.0791	1.103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0791	1.103	NaN	1	1	Median	290790000	130650000	160140000	0	0	0	0	0	0	0	0	0	290790000	130650000	160140000	20513	3017	19415	126104	170964	170964			1	
GPVREGDVLTLLESER	0	Unmodified	1768.9319	0.93192702	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		4	8						2	5	4	3	2	77.199	75.178	2;3	1.938E-10	67749	160511_QHF_FH_JSI11i_3	121.19	102.78			1.4275	1.2492	24.207	14	4	Median	1.5772	1.2602	29.298	5	1	Median	0.96736	1.1551	5.0071	4	2	Linear	1.4452	1.3665	10.472	3	0	Median	1.2279	1.2521	44.587	2	1	Median	2933600000	1354700000	1578900000	1020100000	400310000	619810000	1542200000	791280000	750880000	311850000	133250000	178610000	59487000	29852000	29635000	20514	2028	19416	126105;126106;126107;126108;126109;126110;126111;126112;126113;126114;126115;126116;126117;126118	170965;170966;170967;170968;170969;170970;170971;170972;170973;170974;170975;170976;170977;170978;170979;170980;170981;170982;170983;170984;170985;170986	170965			22	
GPVREGDVLTLLESEREAR	0	Unmodified	2125.1127	0.11274493	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				71.407	69.925	4	0.00031963	57415	160511_QHF_FH_JSI9i_3	62.475	43.715			1.0562	0.85763	NaN	1	1	Median	1.0562	0.85763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78566000	34421000	44144000	78566000	34421000	44144000	0	0	0	0	0	0	0	0	0	20515	2028	19417	126119	170987	170987			1	
GPVSGTEPEPVYSMEAADYR	0	Unmodified	2153.9575	0.95754942	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	60.902	60.324	2;3	4.8741E-112	54855	160511_QHF_FH_JSI12i_1	311.64	289.76			0.99028	0.91587	22.181	7	3	Plateau	1.2551	1.031	NaN	1	0	Median	0.8825	1.0243	11.089	2	1	Median	1.2333	1.2159	30.188	2	1	Median	1.1224	1.167	39.001	2	1	Median	1107100000	538420000	568700000	108730000	48035000	60691000	305180000	164530000	140660000	299160000	128680000	170480000	394050000	197180000	196870000	20516	2522	19418	126120;126121;126122;126123;126124;126125;126126	170988;170989;170990;170991;170992;170993;170994	170991			7	
GPVSPSVSFQPLAR	0	Unmodified	1440.7725	0.77251325	3265	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		62.582	62.078	2	0.0013051	55168	160511_QHF_FH_JSI11i_3	77.744	60.719			1.4023	1.363	48.126	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.49028	0.56843	NaN	1	1	Median	1.3526	1.3036	6.3045	2	2	Median	NaN	NaN	NaN	0	0	Median	105950000	51469000	54477000	0	0	0	12832000	9608900	3223100	93114000	41860000	51254000	0	0	0	20517	3265	19419	126127;126128;126129	170995;170996;170997	170995			3	
GPVTDVAYSHDGAFLAVCDASK	1	Unmodified	2279.0528	0.052846792	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	67.021	66.213	3	1.564E-16	57107	160511_QHF_FH_JSI12i_3	139.98	132.62			1.1659	1.2774	6.2564	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94005	1.1496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2224	1.2811	0.40887	2	0	Median	206780000	92491000	114290000	0	0	0	51672000	17741000	33931000	0	0	0	155110000	74750000	80357000	20518	472	19420	126130;126131;126132	170998;170999;171000	170999			3	
GPVTSHGFSVK	1	Unmodified	1114.5771	0.57710791	2847	Q53EP0	FNDC3B	Fibronectin type III domain-containing protein 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.83	4.1			5				1			1	2		3	23.364	21.306	2;3	6.5326E-05	17892	160511_QHF_FH_JSI9i_3	69.216	58.606			0.82837	0.78351	33.561	5	0	Median	0.86953	0.70882	NaN	1	0	Median	0.66129	0.78351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82837	0.83181	42.602	3	0	Median	265950000	142080000	123870000	56378000	27462000	28917000	55984000	34559000	21425000	0	0	0	153590000	80060000	73531000	20519	2847	19421	126133;126134;126135;126136;126137;126138	171001;171002;171003;171004;171005;171006;171007	171003			7	
GPVVPAFALWDGELLTHSGLEVPEGL	0	Unmodified	2702.3956	0.3955683	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	99.284	89.854	3	5.2505E-09	51544	160513_QHF_FH_JSI11Kac_6	88.755	81.309			1.155	1.1653	11.1	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1435	1.0773	NaN	1	0	Median	1.1667	1.2604	NaN	1	0	Median	272540000	126940000	145600000	0	0	0	0	0	0	214470000	102890000	111580000	58069000	24049000	34020000	20520	3795	19422	126139;126140	171008	171008			1	
GPVYPHPVLLPNGSLFPGHLAPK	1	Unmodified	2406.3212	0.32122157	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			86.424	85.226	4	0.0013851	71149	160511_QHF_FH_JSI10i_3	42.172	38.277			0.68482	0.67432	31.414	2	1	Median	1.0077	0.84205	NaN	1	0	Median	0.46541	0.54	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26663000	16124000	10538000	15986000	7865600	8120600	10676000	8258600	2417900	0	0	0	0	0	0	20521	3164	19423	126141;126142	171009;171010	171009			1	
GPWAEVHAVSLQTYK	1	Unmodified	1684.8573	0.85730551	3874	Q92729	PTPRU	Receptor-type tyrosine-protein phosphatase U	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.839	60.565	3	0.018938	52150	160511_QHF_FH_JSI12i_3	38.376	26.684			1.0886	1.0976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0886	1.0976	NaN	1	1	Median	35670000	20173000	15497000	0	0	0	0	0	0	0	0	0	35670000	20173000	15497000	20522	3874	19424	126143	171011	171011			1	
GPWTCVGDMNR	0	Unmodified	1291.5438	0.54377564	92	O00115	DNASE2	Deoxyribonuclease-2-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	43.266	42.479	2	0.00027417	37411	160511_QHF_FH_JSI11i_3	77.662	66.498			0.91854	1.0024	15.913	4	0	Median	NaN	NaN	NaN	0	0	Median	0.83424	0.95123	NaN	1	0	Median	0.87085	0.81338	NaN	1	0	Median	1.0494	1.1176	7.979	2	0	Median	109550000	57396000	52153000	0	0	0	14294000	7760000	6534300	45207000	27534000	17674000	50047000	22102000	27945000	20523	92	19425	126144;126145;126146;126147	171012;171013;171014;171015	171013			4	
GPYDFDQIK	1	Unmodified	1081.508	0.50802529	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	49.587	46.917	2	1.6336E-06	42160	160511_QHF_FH_JSI10i_1	131.06	92.099			0.89997	0.9834	22.054	5	0	Linear	1.1189	0.92111	NaN	1	0	Median	0.88126	1.0267	NaN	1	0	Median	1.0253	1.0096	NaN	1	0	Median	0.71433	0.75227	31.739	2	0	Median	909650000	424660000	484990000	187940000	78477000	109460000	242570000	121830000	120740000	239940000	114960000	124980000	239200000	109390000	129810000	20524	2902	19426	126148;126149;126150;126151;126152	171016;171017;171018;171019;171020;171021	171019			6	
GQAAVQQLQAEGLSPR	0	Unmodified	1651.8642	0.86418181	1092;572	O75828;P16152	CBR3;CBR1	Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.78	8	6					6			4	6	5	5	51.585	47.785	2;3	7.8892E-235	43074	160511_QHF_FH_JSI10i_1	348.72	323.34			0.94115	0.95603	13.15	20	2	Median	1.165	0.98281	6.097	4	1	Median	0.80199	0.95486	20.468	6	1	Median	0.98077	0.94874	10.077	5	0	Median	0.92654	0.97107	9.2212	5	0	Median	3361700000	1714600000	1647100000	854880000	374330000	480550000	967680000	519350000	448330000	804970000	417230000	387740000	734130000	403700000	330440000	20525	572;1092	19427	126153;126154;126155;126156;126157;126158;126159;126160;126161;126162;126163;126164;126165;126166;126167;126168;126169;126170;126171;126172	171022;171023;171024;171025;171026;171027;171028;171029;171030;171031;171032;171033;171034;171035;171036;171037;171038;171039;171040;171041;171042;171043;171044;171045;171046;171047;171048;171049;171050;171051;171052;171053;171054;171055;171056	171035			35	
GQAFVIFK	1	Unmodified	908.51199	0.51198846	906;920	P08579;P09012	SNRPB2;SNRPA	U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.27	1	4	3				3	6	4	5	4	6	6	66.039	59.465	2	8.4395E-10	51028	160511_QHF_FH_JSI11i_2	160.91	132.4			0.95379	0.96559	19.847	21	1	Median	1.0208	0.86144	27.102	5	0	Median	0.82965	1.0198	10.161	4	0	Median	1.0141	0.99052	6.1223	6	0	Median	0.92362	1.0194	19.743	6	1	Median	4190800000	2051300000	2139500000	682580000	334390000	348190000	891520000	455320000	436200000	1872700000	898830000	973900000	744010000	362780000	381230000	20526	906;920	19428	126173;126174;126175;126176;126177;126178;126179;126180;126181;126182;126183;126184;126185;126186;126187;126188;126189;126190;126191;126192;126193	171057;171058;171059;171060;171061;171062;171063;171064;171065;171066;171067;171068;171069;171070;171071;171072;171073;171074;171075;171076;171077;171078;171079;171080;171081;171082;171083;171084;171085;171086;171087;171088;171089;171090;171091;171092;171093;171094	171074			38	
GQAGFFSTPGGASR	0	Unmodified	1338.6317	0.63166267	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			41.935	40.395	2	0.00036508	33613	160511_QHF_FH_JSI10i_3	77.593	66.103			0.70347	0.69309	23.915	2	1	Median	0.70371	0.58526	NaN	1	1	Median	0.70323	0.82078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71033000	43116000	27917000	46192000	28050000	18141000	24842000	15065000	9776200	0	0	0	0	0	0	20527	3469	19429	126194;126195	171095;171096;171097	171095			3	
GQALQVHAGSAK	1	Unmodified	1165.6204	0.62036971	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.6	5.2			4						1	1		2	2	11.697	10.281	2;3	1.0606E-10	7872	160511_QHF_FH_JSI12i_3	144.55	113.99			0.86689	0.88953	24.181	5	0	Median	1.5936	1.389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98185	0.9278	20.463	2	0	Median	0.79459	0.82877	10.006	2	0	Median	582110000	316460000	265650000	2293900	886070	1407800	0	0	0	236780000	112600000	124180000	343040000	202970000	140070000	20528	5001	19430	126196;126197;126198;126199;126200	171098;171099;171100;171101;171102	171100			5	
GQASLYGKR	1	Acetyl (K)	1020.5352	0.53524309	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	27.405	18.457	2	3.3433E-05	12397	160513_QHF_FH_JSI11Kac_4	106.6	53.045			0.84616	0.89527	24.236	6	1	Median	1.1837	0.98234	NaN	1	0	Median	0.675	0.78386	5.6682	2	0	Median	0.65412	0.64162	NaN	1	1	Median	1.0584	1.1595	4.2652	2	0	Median	33859000	20066000	13793000	2250600	1111200	1139400	13543000	7676300	5866400	6364700	5634300	730440	11701000	5644400	6056300	20529	3907	19431	126201;126202;126203;126204;126205;126206;126207	171103;171104;171105;171106;171107;171108;171109;171110;171111	171107	2995		9	
GQASQITASNLVQNYK	1	Unmodified	1720.8744	0.87441214	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	52.247	51.047	2	6.4776E-17	46364	160511_QHF_FH_JSI12i_1	124.86	108.32			1.0124	0.82436	NaN	1	1	Median	1.0124	0.82436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16399000	4871000	11528000	16399000	4871000	11528000	0	0	0	0	0	0	0	0	0	20530	4388	19432	126208;126209	171112;171113	171112			2	
GQASQITASNLVQNYKK	2	Unmodified	1848.9694	0.96937516	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.313	43.735	3	7.1685E-06	36471	160511_QHF_FH_JSI10i_3	90.706	81.662			0.93446	0.89864	6.0845	2	0	Median	1.0583	0.86079	NaN	1	0	Median	0.82511	0.93814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65209000	37218000	27991000	29347000	15627000	13720000	35862000	21591000	14271000	0	0	0	0	0	0	20531	4388	19433	126210;126211	171114;171115;171116;171117	171114			4	
GQATDIAIQAEEIMK	1	Unmodified	1616.808	0.80797206	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								3	1	2	3	77.296	76.523	2	9.8419E-30	69650	160511_QHF_FH_JSI12i_1	188.15	164.54			0.91346	0.86978	17.884	6	4	Median	1.0276	0.8539	NaN	1	1	Median	0.5983	0.74167	NaN	1	0	Median	0.9144	0.88332	26.866	2	2	Median	0.93144	0.99595	16.551	2	1	Median	293250000	141560000	151690000	115440000	57990000	57452000	28202000	13919000	14283000	27651000	15235000	12416000	121950000	54411000	67543000	20532	2759	19434	126212;126213;126214;126215;126216;126217;126218;126219;126220	171118;171119;171120;171121;171122;171123;171124;171125;171126;171127	171120			10	
GQAVDYEGSR	0	Unmodified	1080.4836	0.48360145	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	13.338	9.9913	2	7.8822E-44	8847	160511_QHF_FH_JSI10i_1	215.93	165.23			1.0392	1.0665	9.866	7	1	Median	1.4858	1.215	NaN	1	0	Median	0.81002	0.95818	12.452	2	1	Median	1.0853	1.0766	1.3318	2	0	Median	1.0159	1.0844	4.6958	2	0	Median	892040000	429430000	462610000	222410000	88359000	134060000	233990000	132240000	101750000	217890000	101920000	115970000	217750000	106910000	110830000	20533	1034	19435	126221;126222;126223;126224;126225;126226;126227	171128;171129;171130;171131;171132;171133;171134;171135;171136;171137;171138	171135			11	
GQAVTLLPFFTSLTGGSLEELRR	0	Unmodified	2491.3435	0.34347315	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.54	88.132	3	8.4513E-38	52378	160513_QHF_FH_JSI10Kac_6	162.49	109.71			1.1499	1.3163	25.304	4	1	Linear	1.2901	1.0827	NaN	1	1	Median	1.1202	1.315	NaN	1	0	Median	1.1804	1.1111	NaN	1	0	Median	0.68817	0.72401	NaN	1	0	Median	708510000	342420000	366090000	182510000	77233000	105280000	241330000	129610000	111720000	212050000	95490000	116560000	72607000	40081000	32525000	20534	2094	19436	126228;126229;126230;126231	171139;171140;171141;171142	171141			4	
GQDEASAGGIWGFIK	1	Unmodified	1534.7416	0.74160705	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	2	4	2	84.141	83.596	2;3	4.212E-30	72339	160511_QHF_FH_JSI12i_2	193.49	159.62			0.94317	0.9112	12.582	10	8	Median	1.0359	0.86997	8.4536	2	2	Median	0.7965	0.93772	26.113	2	2	Median	0.90553	0.87141	12.626	4	4	Median	0.89989	0.98689	2.9582	2	0	Median	496330000	272760000	223570000	60042000	33061000	26981000	137960000	79374000	58583000	202670000	111860000	90817000	95657000	48464000	47193000	20535	4171	19437	126232;126233;126234;126235;126236;126237;126238;126239;126240;126241;126242	171143;171144;171145;171146;171147;171148;171149;171150;171151;171152;171153;171154;171155;171156	171146			14	
GQDGIGSK	1	Unmodified	760.37153	0.37153181	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	5.82	3				1	3				3	1	2	1	7.5965	0.33119	2	0.00022467	2900	160511_QHF_FH_JSI11i_1	118.5	86.025			1.1696	0.72416	61.789	6	1	Median	1.2433	0.3517	73.572	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7882	0.7678	47.072	2	1	Median	0.87068	0.95273	NaN	1	0	Median	1995700000	1065600000	930110000	442190000	228290000	213910000	0	0	0	1532900000	826530000	706370000	20628000	10801000	9826800	20536	939	19438	126243;126244;126245;126246;126247;126248;126249	171157;171158;171159;171160;171161;171162;171163	171157			7	
GQDGLQNDFLSISEDVPRPPDTVSTGK	1	Unmodified	2871.3886	0.38864502	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		90.344	89.944	3	1.0546E-20	81502	160511_QHF_FH_JSI10i_1	117.54	111.03			0.91063	0.82385	9.1079	4	3	Median	0.98296	0.82402	NaN	1	1	Median	0.69384	0.80612	NaN	1	0	Median	0.92192	0.89853	12.3	2	2	Median	NaN	NaN	NaN	0	0	Median	170620000	91855000	78764000	33021000	13640000	19382000	48935000	25181000	23754000	88662000	53034000	35628000	0	0	0	20537	4202	19439	126250;126251;126252;126253	171164;171165;171166;171167;171168;171169;171170	171167			7	
GQDGSPQIENIQPFSAK	1	Unmodified	1814.8799	0.87989145	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	59.809	59.085	2;3	1.3437E-07	52326	160511_QHF_FH_JSI9i_1	130.2	108.33			0.98275	0.83591	23.556	6	0	Plateau	1.2937	1.0648	41.067	2	0	Median	0.7997	0.93171	NaN	1	0	Median	0.99711	0.97373	NaN	1	0	Median	1.0557	1.0826	29.737	2	0	Median	338140000	187190000	150950000	115370000	60076000	55292000	51092000	32076000	19016000	54301000	29592000	24709000	117380000	65441000	51938000	20538	1529	19440	126254;126255;126256;126257;126258;126259	171171;171172;171173;171174;171175;171176;171177;171178;171179	171178			9	
GQDIFIIQTIPR	0	Unmodified	1399.7823	0.78234966	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	3.99		1					3	5		2	3	2	2	83.045	73.778	2;3	7.0137E-19	38459	160513_QHF_FH_JSI11Kac_5	151.1	121.93			0.94658	0.9992	11.799	8	3	Median	1.2007	1.0208	NaN	1	1	Median	0.79043	0.93044	4.0881	3	2	Median	0.98881	0.97873	19.566	2	0	Median	1.0679	1.1555	1.7293	2	0	Median	79599000	42094000	37505000	6814600	3173700	3640800	44371000	24653000	19718000	21225000	10712000	10513000	7187500	3554700	3632700	20539	2543	19441	126260;126261;126262;126263;126264;126265;126266;126267;126268	171180;171181;171182;171183;171184;171185;171186;171187;171188;171189;171190;171191	171187			12	
GQDLLALIVAQHR	0	Unmodified	1432.815	0.81504677	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	6.25	5.63			3						1	2	1		1	81.972	81.031	3	0.00065665	68036	160511_QHF_FH_JSI10i_3	56.569	43.938			0.54568	0.55277	34.159	3	0	Plateau	1.2863	1.0943	NaN	1	0	Median	0.65066	0.76469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54568	0.55277	NaN	1	0	Median	62243000	36754000	25490000	9871000	4805600	5065400	17603000	10465000	7137100	0	0	0	34770000	21483000	13287000	20540	3359	19442	126269;126270;126271;126272	171192;171193	171192			2	
GQDMETEAHQNK	1	Oxidation (M)	1402.5783	0.57830647	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.56	11					5				3	5	5	3	5.2238	2.3553	2;3	1.4099E-09	2159	160511_QHF_FH_JSI11i_1	124.42	106.11			0.90295	0.93156	16.839	11	6	Median	1.301	1.0697	19.463	2	1	Median	0.51501	0.61035	24.978	3	2	Plateau	0.91146	0.8958	5.4295	3	2	Median	0.92534	0.93402	2.3626	3	1	Plateau	468090000	238090000	230000000	82005000	38054000	43950000	59927000	35218000	24709000	184390000	98406000	85981000	141770000	66414000	75361000	20541	2655	19443	126273;126274;126275;126276;126277;126278;126279;126280;126281;126282;126283;126284;126285;126286;126287;126288	171194;171195;171196;171197;171198;171199;171200;171201;171202;171203;171204;171205;171206;171207;171208;171209	171196		2071	16	
GQDMETEAHQNK	1	Unmodified	1386.5834	0.58339185	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	8						2			2	3	3	2	6.88	4.8577	2;3	1.8053E-128	4181	160511_QHF_FH_JSI12i_1	288.35	266.89			1.2326	1.2479	15.699	10	5	Median	1.31	1.0912	7.5084	2	0	Median	1.2505	1.4998	6.4368	3	3	Median	1.125	1.0892	9.1571	3	2	Median	1.2733	1.3539	5.5945	2	0	Median	3198100000	1320400000	1877600000	501970000	224000000	277960000	833670000	343840000	489840000	787800000	329070000	458730000	1074600000	423530000	651110000	20542	2655	19443	126289;126290;126291;126292;126293;126294;126295;126296;126297;126298	171210;171211;171212;171213;171214;171215;171216;171217;171218;171219;171220;171221;171222;171223	171215			14	
GQDMETEAHQNKLEEMINELAVAMTAVK	2	Unmodified	3129.4781	0.47807043	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	102.94	102.93	3;4	9.3413E-14	89503	160511_QHF_FH_JSI12i_3	98.967	93.755			1.0647	1.094	16.371	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1005	1.3573	NaN	1	1	Median	1.03	0.97111	NaN	1	0	Median	1.056	1.094	14.841	2	1	Median	269020000	153040000	115970000	0	0	0	9514300	6283800	3230500	84913000	50160000	34753000	174590000	96598000	77991000	20543	2655	19444	126299;126300;126301;126302	171224;171225;171226;171227;171228	171228			5	
GQDPGAPQLQSESKPPK	2	Unmodified	1762.885	0.88497683	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	22.919	22.609	3	0.0025976	19917	160511_QHF_FH_JSI12i_1	54.418	45.818			0.82511	0.84717	2.9677	3	3	Median	NaN	NaN	NaN	0	0	Median	0.73114	0.85054	NaN	1	1	Median	0.8461	0.80642	NaN	1	1	Median	0.82511	0.84717	NaN	1	1	Median	145050000	84086000	60963000	0	0	0	49911000	29318000	20593000	30099000	14761000	15338000	65039000	40007000	25032000	20544	2943	19445	126303;126304;126305;126306	171229;171230;171231;171232	171231			4	
GQDPGAPQLQSESKPPKK	3	Unmodified	1890.9799	0.97993984	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		18.387	17.311	3;4	0.00077749	14071	160511_QHF_FH_JSI10i_3	60.317	50.529			0.49902	0.57147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49902	0.57147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12079000	9135200	2943900	0	0	0	12079000	9135200	2943900	0	0	0	0	0	0	20545	2943	19446	126307;126308	171233;171234	171234			2	
GQDQGPPER	0	Unmodified	982.44682	0.44682202	5116	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	6.0945	-1.0574	2	0.061061	2181	160513_QHF_FH_JSI12Kac_3	47.603	36.234			1.0925	1.1741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0925	1.1741	NaN	1	1	Median	1631200	733550	897630	0	0	0	0	0	0	0	0	0	1631200	733550	897630	20546	5116	19447	126309	171235	171235			1	
GQDSIEPVPGQK	1	Unmodified	1253.6252	0.62518031	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	24.679	24.123	2	1.1947E-07	21030	160511_QHF_FH_JSI11i_1	160.91	121.37			0.93146	0.93325	5.9032	4	0	Median	1.0497	0.87179	NaN	1	0	Median	0.86461	1.0065	NaN	1	0	Median	0.9483	0.9262	NaN	1	0	Median	0.91492	0.94035	NaN	1	0	Median	392020000	199300000	192730000	85500000	45512000	39988000	87215000	44966000	42248000	122850000	69161000	53688000	96459000	39657000	56802000	20547	4946	19448	126310;126311;126312;126313;126314	171236;171237;171238;171239;171240;171241;171242;171243	171236			8	
GQDWEQTQK	1	Unmodified	1118.4993	0.49925152	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.096	12.673	2	0.00010378	10127	160511_QHF_FH_JSI9i_1	111.46	88.715			0.61613	0.68077	22.213	4	2	Median	0.97815	0.79614	NaN	1	1	Median	0.52617	0.6265	NaN	1	0	Median	0.49915	0.48249	NaN	1	1	Median	0.72146	0.73974	NaN	1	0	Median	257460000	152610000	104850000	48314000	21419000	26895000	75945000	45344000	30601000	52120000	34944000	17176000	81082000	50904000	30178000	20548	3372	19449	126315;126316;126317;126318	171244;171245;171246;171247;171248;171249;171250	171250			7	
GQEADLEAGGEEVPEANGSAGK	1	Unmodified	2113.94	0.9399851	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	38.701	38.369	2	3.2215E-59	34577	160511_QHF_FH_JSI11i_1	260.25	219.01			0.63873	0.67859	6.0774	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62201	0.70839	NaN	1	1	Median	0.65589	0.65005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48823000	29405000	19418000	0	0	0	21875000	15913000	5961600	26948000	13492000	13456000	0	0	0	20549	5095	19450	126319;126320;126321;126322	171251;171252;171253;171254	171251			4	
GQEDSLASAVDAATEQK	1	Unmodified	1718.7959	0.79588705	3759	Q8WUD4	CCDC12	Coiled-coil domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	57.147	56.404	2	1.2388E-10	51279	160511_QHF_FH_JSI12i_1	135.02	121.6			1.6761	1.3914	17.076	3	3	Plateau	1.6761	1.3914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0038	1.9175	NaN	1	1	Median	1.4662	1.4755	NaN	1	1	Median	82966000	36885000	46081000	33420000	12917000	20503000	0	0	0	21270000	11153000	10117000	28276000	12815000	15461000	20550	3759	19451	126323;126324;126325	171255;171256;171257	171256			3	
GQEEISGALPVASPASSR	0	Unmodified	1754.8799	0.87989145	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.574	51.801	2	1.5087E-22	46893	160511_QHF_FH_JSI11i_1	171.26	133.83			1.1831	1.107	7.697	5	2	Median	1.3395	1.075	10.048	2	2	Median	0.91737	1.0874	NaN	1	0	Median	1.1272	1.107	NaN	1	0	Median	1.1831	1.2339	NaN	1	0	Median	199490000	92402000	107080000	79450000	36210000	43240000	36512000	20177000	16335000	45083000	17315000	27768000	38440000	18700000	19740000	20551	5239	19452	126326;126327;126328;126329;126330	171258;171259;171260;171261;171262;171263;171264	171258			7	
GQEFVDEIQGR	0	Unmodified	1276.6048	0.60477922	2424	Q13490	BIRC2	Baculoviral IAP repeat-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.316	42.679	2	0.00048936	38798	160511_QHF_FH_JSI12i_1	78.655	67.292			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20552	2424	19453	126331	171265	171265			1	
GQELAFPLSPDWQVDYESYTWRK	1	Unmodified	2814.3289	0.3289453	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		1	1	2	95.693	91.906	3	2.0785E-11	47659	160513_QHF_FH_JSI10Kac_6	92.426	74.179			1.0123	0.98117	27.586	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3696	1.6331	NaN	1	0	Median	1.0458	0.96885	NaN	1	0	Median	0.90794	0.93885	8.0214	2	0	Median	390360000	170340000	220020000	0	0	0	75473000	29694000	45779000	94271000	39124000	55146000	220620000	101520000	119100000	20553	1284	19454	126332;126333;126334;126335	171266;171267;171268;171269	171269			3	
GQELIYAGMPITEVFK	1	Unmodified	1794.9226	0.92260789	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								3	4	4	5	101.05	100.94	2;3	8.0162E-52	91648	160511_QHF_FH_JSI11i_1	216.34	182.46			0.75226	0.80664	18.222	15	1	Median	0.97047	0.82806	9.9271	3	0	Median	0.51935	0.60956	19.59	4	1	Median	0.77411	0.77667	6.4567	4	0	Median	0.75334	0.82406	13.29	4	0	Median	2705000000	1587800000	1117200000	311790000	165080000	146710000	680030000	436000000	244030000	930940000	533840000	397100000	782240000	452850000	329400000	20554	1798	19455	126336;126337;126338;126339;126340;126341;126342;126343;126344;126345;126346;126347;126348;126349;126350;126351	171270;171271;171272;171273;171274;171275;171276;171277;171278;171279;171280;171281;171282;171283;171284;171285;171286;171287;171288;171289;171290;171291;171292;171293	171271			24	
GQELIYAGMPITEVFK	1	Oxidation (M)	1810.9175	0.91752251	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	87.37	87.251	2	0.001624	79217	160511_QHF_FH_JSI10i_1	57.434	41.895			0.32501	0.37105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.32501	0.37105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13857000	9732300	4124400	0	0	0	13857000	9732300	4124400	0	0	0	0	0	0	20555	1798	19455	126352;126353	171294;171295	171295		1475	2	
GQENGLDGTK	1	Unmodified	1017.4727	0.47270242	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	8.2019	4.8895	2	2.6351E-16	5272	160511_QHF_FH_JSI12i_1	169.37	127.93			0.8572	0.93147	10.073	7	0	Median	1.2446	1.0122	NaN	1	0	Median	0.80763	0.94272	4.087	2	0	Median	0.92771	0.91758	4.6343	2	0	Median	0.77219	0.83042	16.239	2	0	Median	1335100000	743100000	592030000	298470000	138120000	160350000	361530000	217780000	143760000	337240000	180560000	156680000	337890000	206650000	131240000	20556	2505	19456	126354;126355;126356;126357;126358;126359;126360	171296;171297;171298;171299;171300;171301;171302;171303	171298			8	
GQEPQMK	1	Unmodified	816.37999	0.379988	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.0176	6.6654	2	0.0087459	4628	160511_QHF_FH_JSI12i_1	71.342	54.416			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20557	1172	19457	126361	171304	171304			1	
GQESAGIVTSDGSSVPTFK	1	Unmodified	1865.9007	0.90068647	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.147	55.492	2	6.7962E-68	49995	160511_QHF_FH_JSI10i_1	238.02	213.73			0.95946	0.95566	0.80523	4	0	Linear	1.1455	0.94596	NaN	1	0	Median	0.7956	0.93714	NaN	1	0	Median	0.99705	0.95551	NaN	1	0	Median	0.92328	0.9489	NaN	1	0	Median	353990000	186300000	167690000	75852000	38803000	37049000	73224000	40618000	32606000	108430000	56063000	52371000	96478000	50812000	45666000	20558	2241	19458	126362;126363;126364;126365	171305;171306;171307;171308;171309;171310;171311;171312	171310			8	
GQESFKK	2	Unmodified	822.42357	0.42356738	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.26	5	8	7					7	3	6	8	8	8	5.5736	2.4891	2;3	0.0013469	2964	160511_QHF_FH_JSI12i_2	121.99	58.841			0.88602	0.89229	23.68	30	0	Median	1.2012	0.98465	26.028	6	0	Linear	0.75549	0.89539	21.211	8	0	Median	1.0942	1.0751	15.165	8	0	Median	0.70943	0.77529	21.64	8	0	Median	32838000000	18647000000	14191000000	2948100000	1244400000	1703700000	3793200000	2172600000	1620600000	7926200000	3882500000	4043700000	18171000000	11348000000	6822800000	20559	857	19459	126366;126367;126368;126369;126370;126371;126372;126373;126374;126375;126376;126377;126378;126379;126380;126381;126382;126383;126384;126385;126386;126387;126388;126389;126390;126391;126392;126393;126394;126395	171313;171314;171315;171316;171317;171318;171319;171320;171321;171322;171323;171324;171325;171326;171327;171328;171329;171330;171331;171332;171333;171334;171335;171336;171337;171338;171339;171340;171341;171342;171343;171344;171345;171346;171347	171319			35	
GQESFKK	2	Acetyl (K)	864.43413	0.43413207	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.936					1	3	4	3			3	4	4	16.799	8.6613	2	2.045E-06	7000	160513_QHF_FH_JSI12Kac_3	138.54	66.406			0.85679	0.90758	18.077	11	0	Median	NaN	NaN	NaN	0	0	Median	0.83916	0.94427	10.422	3	0	Plateau	0.9197	0.89922	10.923	4	0	Median	0.89106	0.96004	29.617	4	0	Median	1481100000	820700000	660360000	0	0	0	530120000	319370000	210750000	392900000	205750000	187150000	558050000	295590000	262460000	20560	857	19459	126396;126397;126398;126399;126400;126401;126402;126403;126404;126405;126406	171348;171349;171350;171351;171352;171353;171354;171355;171356;171357	171353	547		10	
GQETSTNPIASIFAWTR	0	Unmodified	1877.9272	0.92717599	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.39	1	1	4						3	2	4	2	1	98.823	96.115	2	0	90651	160511_QHF_FH_JSI11i_3	391.61	365.91			0.89572	1.0418	16.37	9	1	Median	1.464	1.2184	15.992	2	0	Median	0.87677	1.0475	14.918	4	1	Median	0.92088	0.8792	4.0784	2	0	Median	0.88655	0.91172	NaN	1	0	Median	2465500000	1280600000	1184900000	241710000	101140000	140570000	1113400000	591040000	522350000	789120000	427660000	361450000	321300000	160810000	160490000	20561	576	19460	126407;126408;126409;126410;126411;126412;126413;126414;126415	171358;171359;171360;171361;171362;171363;171364;171365;171366;171367	171358			9	
GQEVETSVTYYR	0	Unmodified	1430.6678	0.66777341	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	5.83	4				1	4	3		4	3	6	3	4	38.943	31.753	2	2.6403E-60	6638	160513_QHF_FH_JSI9Kac_3	234.9	202.49			0.92479	0.95679	16.061	12	2	Median	1.2732	1.0209	23.893	2	1	Median	0.77716	0.91383	6.9397	4	1	Median	0.84805	0.82033	23.477	3	0	Plateau	0.86909	0.9178	14.79	3	0	Plateau	2299100000	1223800000	1075300000	459760000	214590000	245170000	657170000	380480000	276700000	531720000	284020000	247700000	650420000	344720000	305700000	20562	307	19461	126416;126417;126418;126419;126420;126421;126422;126423;126424;126425;126426;126427;126428;126429;126430;126431	171368;171369;171370;171371;171372;171373;171374;171375;171376;171377;171378;171379;171380;171381;171382;171383;171384;171385;171386;171387;171388;171389;171390;171391;171392	171379			25	
GQEVETSVTYYRLEEVAK	1	Unmodified	2100.0375	0.037514303	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	5.75	5.93		2	1						1	1	1		2	62.376	59.584	3	4.6867E-09	51195	160511_QHF_FH_JSI12i_2	137.14	118.35			1.0426	1.0819	13.72	4	1	Linear	1.6532	1.4347	NaN	1	1	Median	0.91495	1.0963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0426	1.1065	6.7821	2	0	Median	306880000	140650000	166230000	10281000	2887600	7393000	91317000	48774000	42543000	0	0	0	205290000	88992000	116290000	20563	307	19462	126432;126433;126434;126435	171393;171394;171395;171396;171397;171398	171393			6	
GQEVYVKKTMGR	2	Acetyl (K);Oxidation (M)	1452.7395	0.73949856	2192	Q02763	TEK	Angiopoietin-1 receptor	yes	yes	1	0	1	2	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	66.75	57.848	3	0.026658	30447	160513_QHF_FH_JSI12Kac_6	36.847	25.233			1.0488	1.2331	33.366	3	0	Median	1.4964	1.2625	NaN	1	0	Median	1.0488	1.2331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64753	0.70031	NaN	1	0	Median	127160000	63687000	63478000	32007000	12109000	19898000	70684000	36962000	33722000	0	0	0	24474000	14616000	9857900	20564	2192	19463	126436;126437;126438	171399	171399	2302		0	
GQEYPAIVEFAPFQK	1	Unmodified	1722.8617	0.86172219	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4									2	3	4	90.514	90.052	2;3	0.00038577	82123	160511_QHF_FH_JSI12i_1	70.488	55.287			0.62246	0.691	18.193	7	4	Median	NaN	NaN	NaN	0	0	Median	0.4941	0.56773	20.457	2	1	Median	0.6515	0.62636	24.523	2	1	Median	0.73258	0.73838	6.6158	3	2	Median	112810000	73349000	39457000	0	0	0	46912000	31374000	15538000	36931000	24371000	12560000	28963000	17605000	11358000	20565	4565	19464	126439;126440;126441;126442;126443;126444;126445;126446;126447	171400;171401;171402;171403;171404;171405;171406;171407	171404			8	
GQFNAFSYHFR	0	Unmodified	1372.6313	0.63126874	3865	Q92626	PXDN	Peroxidasin homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			63.785	55.145	3	0.0014433	30314	160513_QHF_FH_JSI10Kac_6	50.484	45.33			0.87473	0.8824	1.7962	2	0	Median	1.0227	0.87126	NaN	1	0	Median	0.74821	0.89368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33669000	18517000	15152000	8068200	3771400	4296700	25601000	14746000	10855000	0	0	0	0	0	0	20566	3865	19465	126448;126449;126450	171408;171409;171410	171410			3	
GQFNFDHPDAFDNELILK	1	Unmodified	2119.0011	0.0010692176	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	86.622	86.009	3	4.0996E-24	74695	160511_QHF_FH_JSI12i_3	137.45	128.95			0.95888	1.0742	11.497	9	8	Median	1.2408	1.0744	25.008	2	2	Median	0.83266	1.0119	11.546	2	2	Median	1.0246	1.0155	9.6815	2	2	Median	0.90928	0.94772	8.8976	3	2	Plateau	521120000	276030000	245090000	102070000	48334000	53733000	146090000	82594000	63499000	129490000	68134000	61352000	143480000	76970000	66508000	20567	4574	19466	126451;126452;126453;126454;126455;126456;126457;126458;126459;126460	171411;171412;171413;171414;171415;171416;171417;171418;171419;171420	171420			10	
GQFSEVYR	0	Unmodified	984.46649	0.46649483	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	26.726	25.839	2	0.052344	21693	160511_QHF_FH_JSI12i_2	36.76	23.772			0.65243	0.64496	10.428	3	0	Plateau	0.91461	0.79151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65243	0.64496	NaN	1	0	Median	0.66263	0.73944	NaN	1	0	Median	97078000	52594000	44484000	23857000	10859000	12998000	0	0	0	44347000	23982000	20365000	28874000	17753000	11121000	20568	3727	19467	126461;126462;126463	171421	171421			1	
GQFSTDELVAEVEK	1	Unmodified	1550.7464	0.74641766	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	8		2							3	3	2	2	72.758	72.053	2;3	4.1793E-98	65347	160511_QHF_FH_JSI10i_1	310.51	296.27			1.031	1.0514	12.877	10	2	Median	1.0622	0.90682	16.046	3	2	Median	0.92895	1.0971	11.498	3	0	Median	1.1473	1.1077	13.392	2	0	Median	1.0141	1.0652	12.696	2	0	Median	4278000000	2168500000	2109500000	784540000	356180000	428360000	1002300000	540030000	462300000	1454000000	681680000	772340000	1037100000	590570000	446490000	20569	1807;2155	19468	126464;126465;126466;126467;126468;126469;126470;126471;126472;126473	171422;171423;171424;171425;171426;171427;171428;171429;171430;171431;171432;171433;171434;171435;171436;171437;171438;171439	171433			18	
GQGAPAREPIISSEEQK	1	Unmodified	1795.9064	0.90644055	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		24.986	24.188	3	3.5133E-07	19932	160511_QHF_FH_JSI10i_3	124.92	118.8			0.86667	0.91864	9.2311	4	0	Median	1.0142	0.85697	NaN	1	0	Median	0.8221	1.0013	2.3627	2	0	Median	0.90822	0.85286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	235860000	127450000	108410000	53910000	20339000	33571000	123200000	70373000	52832000	58743000	36737000	22007000	0	0	0	20570	1888	19469	126474;126475;126476;126477	171440;171441;171442;171443;171444;171445;171446;171447	171443			8	
GQGATAAQQGGYEIPAR	0	Unmodified	1673.8121	0.81214624	4985	Q9NSK0	KLC4	Kinesin light chain 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	32.159	31.241	2	3.0108E-40	28087	160511_QHF_FH_JSI12i_1	159.08	137.71			0.8603	0.7913	21.553	2	1	Median	0.83893	0.67945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88221	0.92157	NaN	1	0	Median	54968000	28174000	26794000	24481000	14092000	10390000	0	0	0	0	0	0	30487000	14083000	16404000	20571	4985	19470	126478;126479;126480	171448;171449;171450	171449			3	
GQGEAPPQYLTDDLEFLR	0	Unmodified	2047.9851	0.9850848	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		94.875	94.572	2	8.77E-24	86017	160511_QHF_FH_JSI11i_1	140.1	123.33			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20572	681	19471	126481	171451	171451			1	
GQGGYPGKPR	1	Acetyl (K)	1057.5305	0.53049207	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	23.915	14.241	2	0.0051689	9835	160513_QHF_FH_JSI10Kac_4	74.301	40.504			0.15682	0.18431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15682	0.18431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1843400	1535700	307750	0	0	0	1843400	1535700	307750	0	0	0	0	0	0	20573	4521	19472	126482;126483;126484;126485;126486	171452;171453;171454;171455;171456	171453	3178		5	
GQGHQYELNSK	1	Unmodified	1259.5895	0.58946351	114	O00257	CBX4	E3 SUMO-protein ligase CBX4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	8.6687	8.7662	2	6.1346E-06	6144	160511_QHF_FH_JSI12i_3	110.39	95.236			0.86754	0.92856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86754	0.92856	NaN	1	0	Median	20448000	9736600	10711000	0	0	0	0	0	0	0	0	0	20448000	9736600	10711000	20574	114	19473	126487;126488	171457;171458;171459	171458			3	
GQGLNMTPSMVAPSGMPATMSNPR	0	Unmodified	2431.1116	0.11164077	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.03	100.9	3	0.051821	88568	160511_QHF_FH_JSI11i_2	10.119	2.3156			0.099562	0.098935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.099562	0.098935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43411000	39442000	3969200	0	0	0	0	0	0	43411000	39442000	3969200	0	0	0	20575	2686	19474	126489	171460	171460			1	
GQGNWGPPGGEMTFSIPTHK	1	Unmodified	2096.9738	0.97380861	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	70.875	70.29	3	1.3969E-10	62597	160511_QHF_FH_JSI11i_3	123.43	112.66			0.88659	0.81799	4.8653	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77535	0.88857	NaN	1	0	Median	0.89099	0.81799	NaN	1	0	Median	0.81434	0.81558	NaN	1	0	Median	264790000	146680000	118110000	0	0	0	47301000	27712000	19589000	139200000	77672000	61528000	78287000	41293000	36994000	20576	3911	19475	126490;126491;126492	171461;171462;171463;171464;171465;171466	171462			6	
GQGPDETMDGASGENEHK	1	Unmodified	1857.7435	0.7435339	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	12.662	12.147	3	1.7049E-07	9771	160511_QHF_FH_JSI10i_1	91.622	87.38			0.92768	0.94979	33.895	3	2	Median	1.1634	0.95259	NaN	1	0	Median	0.46825	0.52881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92768	0.94979	NaN	1	1	Median	108870000	63282000	45583000	43198000	19055000	24142000	32283000	24456000	7826700	0	0	0	33385000	19771000	13614000	20577	2549	19476	126493;126494;126495;126496	171467;171468;171469;171470;171471	171469			5	
GQGPGEVDPK	1	Unmodified	982.47197	0.47197413	1120	P17568	NDUFB7	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.805	10.421	2	0.00018279	7909	160511_QHF_FH_JSI9i_1	82.426	54.901			0.84066	0.90594	8.9185	4	0	Median	1.1241	0.92007	NaN	1	0	Median	0.8114	0.94957	NaN	1	0	Median	0.78724	0.77568	NaN	1	0	Median	0.87098	0.89202	NaN	1	0	Median	697070000	362330000	334750000	171330000	73794000	97537000	212360000	121040000	91324000	179760000	98842000	80916000	133620000	68649000	64969000	20578	1120	19477	126497;126498;126499;126500	171472;171473;171474;171475;171476;171477	171477			6	
GQGSSPVAMQK	1	Oxidation (M)	1104.5234	0.52335778	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	2	3	4	10.3	7.835	2	2.5477E-09	11395	160511_QHF_FH_JSI10i_1	133.23	112.81			0.95315	0.98276	44.977	10	1	Median	1.5284	1.2742	70.922	2	1	Median	0.77045	0.91428	9.801	2	0	Median	1.0528	1.0752	21.296	3	0	Median	0.79717	0.8667	55.376	3	0	Median	653030000	352010000	301020000	242730000	124000000	118730000	95782000	58812000	36970000	158040000	67963000	90075000	156490000	101240000	55250000	20579	1139	19478	126501;126502;126503;126504;126505;126506;126507;126508;126509;126510;126511	171478;171479;171480;171481;171482;171483;171484;171485;171486;171487;171488;171489;171490;171491	171484		771	13	
GQGSSPVAMQK	1	Unmodified	1088.5284	0.52844316	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.4	4		2			3				1	2	2	4	16.166	13.555	2	8.6644E-73	11280	160511_QHF_FH_JSI11i_1	245.5	224.23			1.0044	1.0696	14.483	8	0	Median	1.2288	1.0167	NaN	1	0	Median	0.9194	1.0866	4.6572	2	0	Median	1.1474	1.1474	30.643	2	0	Median	1.2399	1.3063	14.115	3	0	Plateau	2133600000	1023000000	1110600000	550650000	223780000	326860000	504210000	253880000	250330000	437460000	220930000	216530000	641330000	324430000	316890000	20580	1139	19478	126512;126513;126514;126515;126516;126517;126518;126519;126520	171492;171493;171494;171495;171496;171497;171498;171499;171500;171501;171502;171503;171504;171505;171506;171507	171493			16	
GQGSVSASVTEGQQNEQ	0	Unmodified	1704.7551	0.75508487	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	23.248	21.291	2	1.1746E-81	18242	160511_QHF_FH_JSI9i_1	252.42	242.99			1.0288	1.0745	9.3193	5	0	Median	1.2898	1.0746	NaN	1	0	Median	0.92563	1.0745	NaN	1	0	Median	1.1144	1.0818	11.119	2	0	Median	0.85941	0.91227	NaN	1	0	Median	405060000	198590000	206470000	117520000	50719000	66798000	103680000	54922000	48760000	90340000	46399000	43941000	93521000	46551000	46969000	20581	1860	19479	126521;126522;126523;126524;126525	171508;171509;171510;171511;171512;171513;171514;171515;171516;171517	171516			10	
GQGTEFNLTFRK	1	Unmodified	1396.7099	0.709913	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.797	46.231	3	0.055863	38622	160511_QHF_FH_JSI10i_3	23.817	10.939			1.0057	1.168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0057	1.168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24570000	15007000	9562600	0	0	0	24570000	15007000	9562600	0	0	0	0	0	0	20582	486	19480	126526	171518	171518			1	
GQGTLSVVTMYHAK	1	Unmodified	1490.7551	0.75514863	780	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			47.597	46.031	3	0.032984	38437	160511_QHF_FH_JSI10i_3	32.53	28.585			0.50747	0.59734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50747	0.59734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16355000	12574000	3780600	0	0	0	16355000	12574000	3780600	0	0	0	0	0	0	20583	780	19481	126527	171519	171519			1	
GQGTLSVVTVYHAK	1	Unmodified	1458.7831	0.78307794	70	CON__Q2UVX4			yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			51.772	42.54	3	0.00043776	22627	160513_QHF_FH_JSI9Kac_6	64.374	54.587		+	1.0186	0.87226	NaN	1	0	Median	1.0186	0.87226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8793800	5215300	3578500	8793800	5215300	3578500	0	0	0	0	0	0	0	0	0	20584	70	19482	126528;126529	171520;171521	171520			2	
GQHEPSKPPPAGETVTGGFGAK	2	Unmodified	2148.06	0.05998108	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								1	3	2	28.466	28.179	3;4	4.3464E-13	24378	160511_QHF_FH_JSI11i_3	111.83	96.413			0.80312	0.83387	10.016	5	1	Median	NaN	NaN	NaN	0	0	Median	0.72881	0.83282	NaN	1	0	Median	0.99943	0.9318	15.704	2	0	Median	0.79264	0.83426	2.5301	2	1	Median	412660000	234110000	178540000	0	0	0	34901000	18092000	16810000	300870000	174510000	126360000	76885000	41510000	35374000	20585	4744	19483	126530;126531;126532;126533;126534;126535	171522;171523;171524;171525;171526;171527;171528;171529;171530;171531;171532;171533;171534	171527			13	
GQHFYAVER	0	Unmodified	1105.5305	0.53049207	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	4.62	4.3			7						1	2	3	2	1	18.862	17.341	2;3	0.00019186	13945	160511_QHF_FH_JSI9i_3	85.676	65.889			1.0853	1.0438	15.789	8	1	Median	1.3175	1.0627	7.1281	2	0	Median	0.936	1.0781	25.189	3	1	Median	1.0385	0.9738	5.2408	2	0	Median	1.2502	1.2385	NaN	1	0	Median	475880000	246930000	228950000	98135000	48908000	49227000	175000000	89371000	85630000	172540000	94964000	77575000	30203000	13688000	16514000	20586	2697	19484	126536;126537;126538;126539;126540;126541;126542;126543	171535;171536;171537;171538	171537			4	
GQHLSDAFAQVNPLK	1	Unmodified	1623.8369	0.83690442	1362	P30711	GSTT1	Glutathione S-transferase theta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	62.122	61.708	2;3	1.3123E-06	54732	160511_QHF_FH_JSI11i_3	145.29	125.69			0.66687	0.65595	69.775	5	4	Median	NaN	NaN	NaN	0	0	Median	0.66687	0.76451	NaN	1	1	Median	0.6309	0.58518	16.147	2	2	Median	1.0038	1.007	127.54	2	1	Median	1078100000	600400000	477690000	0	0	0	99438000	62462000	36976000	427880000	283910000	143970000	550780000	254030000	296740000	20587	1362	19485	126544;126545;126546;126547;126548;126549	171539;171540;171541;171542;171543;171544	171540			6	
GQHPNPLR	0	Unmodified	917.48315	0.48314794	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		5.17	4.84			5						1	2	3	1		7.4124	6.983	2;3	0.00015552	4841	160511_QHF_FH_JSI9i_3	124.37	54.99			0.83789	0.83524	25.672	5	2	Median	1.065	0.86187	35.879	2	1	Median	0.6329	0.73078	32.494	2	1	Median	0.88771	0.83524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1034000000	535760000	498200000	592560000	266870000	325690000	364850000	227190000	137660000	76548000	41701000	34847000	0	0	0	20588	2629	19486	126550;126551;126552;126553;126554;126555	171545;171546;171547;171548;171549;171550	171548			6	
GQHVPGSPFQFTVGPLGEGGAHK	1	Unmodified	2303.1447	0.14471376	1192;2527	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.19		3	14						4	7	6	5	3	69.88	67.342	2;3;4	3.9746E-24	56085	160511_QHF_FH_JSI9i_3	158.89	149.79			0.91749	0.93403	17.311	19	3	Median	1.1932	0.99238	19.506	6	2	Median	0.85223	1.0006	15.545	6	1	Median	0.91323	0.86923	4.1929	4	0	Median	0.78651	0.78318	6.2905	3	0	Median	12863000000	6669100000	6193600000	3487400000	1603500000	1883800000	2712300000	1496800000	1215500000	5328000000	2812600000	2515400000	1335000000	756190000	578780000	20589	1192;2527	19487	126556;126557;126558;126559;126560;126561;126562;126563;126564;126565;126566;126567;126568;126569;126570;126571;126572;126573;126574;126575;126576	171551;171552;171553;171554;171555;171556;171557;171558;171559;171560;171561;171562;171563;171564;171565;171566;171567;171568;171569;171570;171571;171572;171573;171574;171575;171576;171577;171578;171579;171580;171581;171582;171583;171584;171585;171586;171587;171588;171589;171590;171591;171592;171593;171594;171595	171576			44	
GQHVPGSPFQFTVGPLGEGGAHKVR	1	Acetyl (K)	2600.3248	0.32480339	1192;2527	P21333;Q14315	FLNA;FLNC	Filamin-A;Filamin-C	no	no	1	0	0	1			By MS/MS		16	0									1			1		76.361	67.036	4	2.6497E-06	36545	160513_QHF_FH_JSI11Kac_6	108.32	89.605			0.025722	0.02524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.025722	0.02524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42680000	42341000	339140	0	0	0	0	0	0	42680000	42341000	339140	0	0	0	20590	1192;2527	19488	126577	171596	171596	1055		1	
GQHVTGSPFQFTVGPLGEGGAHK	1	Unmodified	2307.1396	0.13962838	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		65.455	64.458	3;4	2.1137E-09	54093	160511_QHF_FH_JSI10i_3	89.721	85.369			0.89401	0.808	2.301	6	0	Median	0.99923	0.80688	0.26135	2	0	Median	0.6815	0.80054	1.2484	2	0	Median	0.89401	0.83256	2.7629	2	0	Median	NaN	NaN	NaN	0	0	Median	1064800000	541740000	523030000	296900000	150620000	146280000	245040000	138690000	106350000	522830000	252430000	270400000	0	0	0	20591	512	19489	126578;126579;126580;126581;126582;126583	171597;171598;171599;171600;171601;171602;171603;171604;171605;171606;171607;171608;171609;171610;171611;171612;171613;171614	171604			18	
GQIAGGINTGSAK	1	Unmodified	1172.6149	0.61494998	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	28.686	21.116	2	0.042049	12465	160513_QHF_FH_JSI12Kac_3	42.001	12.914			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20592	5520	19490	126584	171615	171615			1	
GQICWYQK	1	Unmodified	1081.5015	0.50150012	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.44		5	3						4	1	4	4	3	39.824	36.755	2	7.9117E-05	31240	160511_QHF_FH_JSI12i_3	132.29	116.62			1.1288	1.203	27.625	11	3	Median	1.2867	1.1071	NaN	1	1	Median	1.0546	1.2885	5.7227	3	0	Median	1.0472	1.039	16.571	4	2	Median	1.8626	2.0817	21.347	3	0	Plateau	640950000	282860000	358090000	44288000	22282000	22006000	97396000	43281000	54115000	228500000	121270000	107240000	270760000	96024000	174730000	20593	1051	19491	126585;126586;126587;126588;126589;126590;126591;126592;126593;126594;126595;126596	171616;171617;171618;171619;171620;171621;171622;171623;171624;171625;171626;171627;171628;171629;171630	171627			15	
GQIEEAGWSYVGGWTGQGGSK	1	Unmodified	2152.9814	0.98139641	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	76.038	75.166	2	5.9481E-22	66007	160511_QHF_FH_JSI11i_2	154.69	120.91			0.88763	1.0587	19.957	3	2	Median	NaN	NaN	NaN	0	0	Median	0.88763	1.0587	NaN	1	1	Median	0.87645	0.88896	NaN	1	1	Median	1.2303	1.3237	NaN	1	0	Median	60653000	32185000	28468000	0	0	0	15205000	10006000	5199300	19592000	12831000	6760800	25855000	9347600	16508000	20594	897	19492	126597;126598;126599	171631;171632;171633	171632			3	
GQIEEQK	1	Unmodified	830.4134	0.41339662	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		5.5728	5.2563	2	0.0012285	3013	160511_QHF_FH_JSI9i_1	136.11	67.198			0.71416	0.6111	23.918	3	3	Plateau	0.8235	0.66898	NaN	1	1	Median	0.82815	0.96035	NaN	1	1	Median	0.61934	0.6111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	603830000	381910000	221920000	226210000	151160000	75044000	150960000	85256000	65700000	226670000	145490000	81176000	0	0	0	20595	623	19493	126600;126601;126602	171634;171635;171636	171636			3	
GQIGAPMPGK	1	Unmodified	954.49569	0.49568646	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				2	1	2	2	26.769	26.105	2	2.4854E-06	23027	160511_QHF_FH_JSI10i_1	119.27	89.108			1.1296	1.2089	15.407	5	1	Median	1.652	1.4005	14.979	2	0	Median	1.0089	1.1752	NaN	1	1	Median	1.0346	1.0163	NaN	1	0	Median	1.1296	1.2089	NaN	1	0	Median	821640000	426170000	395480000	155900000	63708000	92195000	210530000	120840000	89692000	191530000	111390000	80137000	263680000	130230000	133450000	20596	1002	19494	126603;126604;126605;126606;126607;126608;126609	171637;171638;171639;171640;171641;171642;171643	171642			7	
GQIIEPK	1	Unmodified	783.44905	0.44905385	5767				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.453	28.179	2	0.0088682	24514	160511_QHF_FH_JSI9i_1	70.912	3.8804	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20597	5767	19495	126610	171644	171644			1	
GQIIGEGR	0	Unmodified	828.44537	0.44536545	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.923	13.133	2	0.020585	10329	160511_QHF_FH_JSI12i_2	45.68	13.21			2.0007	2.219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0007	2.219	NaN	1	0	Median	28296000	12491000	15805000	0	0	0	0	0	0	0	0	0	28296000	12491000	15805000	20598	2108	19496	126611	171645	171645			1	
GQIIGNFQAFDEDTGLPAHAR	0	Unmodified	2256.0923	0.092343841	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	74.713	74.085	3	6.9177E-37	66084	160511_QHF_FH_JSI11i_3	191.95	184.84			1.1857	1.2845	22.955	4	1	Median	1.8033	1.5348	NaN	1	0	Median	1.1023	1.3406	NaN	1	0	Median	1.2753	1.2307	NaN	1	0	Median	0.87432	0.89415	NaN	1	1	Median	434180000	202180000	232000000	84299000	32467000	51832000	80493000	38346000	42146000	171770000	73766000	98000000	97622000	57600000	40022000	20599	2493	19497	126612;126613;126614;126615;126616	171646;171647;171648;171649;171650;171651	171646			6	
GQIINVLNK	1	Unmodified	997.59203	0.59202969	2711	Q15811	ITSN1	Intersectin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	48.354	48.234	2	0.016805	41447	160511_QHF_FH_JSI12i_3	53.166	34.188		+	1.0823	0.98546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0823	0.98546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38802000	23610000	15192000	0	0	0	0	0	0	32160000	16968000	15192000	6642100	6642100	0	20600	2711	19498	126617;126618	171652;171653	171653			2	
GQILMPNIGYGSNK	1	Unmodified	1490.7551	0.75514863	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.73	4	6	5				2	4		5	5	5	6	66.725	63.386	2;3	3.1934E-98	54973	160511_QHF_FH_JSI12i_3	260.59	204.03			0.83906	0.88661	78.655	19	4	Median	1.0252	0.86367	32.623	4	1	Median	0.79277	0.93043	161.43	5	1	Median	0.85274	0.8241	7.3558	4	1	Median	0.84915	0.90972	7.8056	6	1	Median	2972800000	1532200000	1440700000	468670000	246330000	222340000	490080000	215520000	274560000	1056700000	577840000	478890000	957360000	492500000	464860000	20601	2037	19499	126619;126620;126621;126622;126623;126624;126625;126626;126627;126628;126629;126630;126631;126632;126633;126634;126635;126636;126637;126638;126639	171654;171655;171656;171657;171658;171659;171660;171661;171662;171663;171664;171665;171666;171667;171668;171669;171670;171671;171672;171673;171674;171675;171676;171677;171678;171679;171680;171681;171682;171683;171684;171685;171686;171687;171688;171689;171690;171691;171692;171693;171694;171695;171696;171697	171696			44	
GQILMPNIGYGSNK	1	Oxidation (M)	1506.7501	0.75006325	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.61	2	3	5				1	1		1	2	4	5	52.89	49.37	2	3.3798E-07	44070	160511_QHF_FH_JSI11i_3	97.214	72.36			0.75387	0.74524	152.05	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91401	0.90218	27.027	2	2	Median	0.66191	0.62083	193.29	3	2	Median	430610000	374750000	55865000	5747300	5747300	0	5738900	5738900	0	4912400	2485100	2427400	414210000	360770000	53437000	20602	2037	19499	126640;126641;126642;126643;126644;126645;126646;126647;126648;126649;126650;126651	171698;171699;171700;171701;171702;171703;171704;171705;171706;171707;171708;171709;171710	171699		1699	13	
GQILMPNIGYGSNKK	2	Oxidation (M)	1634.845	0.84502627	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.73	4.42			13						2	7	4	3	1	41.447	40.309	2;3	2.5462E-05	35205	160511_QHF_FH_JSI11i_3	113.59	80.382			0.75847	0.76884	23.976	11	4	Median	0.96908	0.78378	19.301	5	1	Median	0.74391	0.86934	37.092	3	2	Plateau	0.70879	0.67607	18.186	2	1	Median	0.57594	0.58823	NaN	1	0	Median	1884700000	1001800000	882980000	838390000	403300000	435090000	625730000	368010000	257720000	310310000	166660000	143650000	110310000	63781000	46527000	20603	2037	19500	126652;126653;126654;126655;126656;126657;126658;126659;126660;126661;126662;126663;126664;126665;126666	171711;171712;171713;171714;171715;171716;171717;171718;171719;171720;171721;171722;171723;171724;171725;171726;171727;171728;171729;171730	171712		1699	20	
GQILMPNIGYGSNKK	2	Unmodified	1618.8501	0.85011165	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.53	6		4	8					1	4	6	6	5		56.244	53.111	2;3	5.4842E-40	43533	160511_QHF_FH_JSI9i_3	231.92	216.77			0.96066	0.95103	14.172	15	4	Median	1.1539	0.96985	17.239	6	2	Median	0.78426	0.95103	11.733	5	2	Median	0.96983	0.93495	14.213	4	0	Median	NaN	NaN	NaN	0	0	Median	18615000000	9760900000	8854500000	7251500000	3636600000	3614900000	6184100000	3554000000	2630100000	5179900000	2570300000	2609500000	0	0	0	20604	2037	19500	126667;126668;126669;126670;126671;126672;126673;126674;126675;126676;126677;126678;126679;126680;126681;126682;126683	171731;171732;171733;171734;171735;171736;171737;171738;171739;171740;171741;171742;171743;171744;171745;171746;171747;171748;171749;171750;171751;171752;171753;171754;171755;171756;171757;171758;171759;171760;171761;171762;171763;171764;171765;171766	171751			35	
GQILNLTQALK	1	Unmodified	1197.7081	0.70812208	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.123	69.311	2	7.887E-13	59996	160511_QHF_FH_JSI12i_3	142	116.42			1.1496	1.1603	15.058	4	2	Median	1.7786	1.4812	NaN	1	1	Median	0.93973	1.1065	NaN	1	1	Median	1.105	1.0534	NaN	1	0	Median	1.1961	1.2168	NaN	1	0	Median	186310000	89017000	97289000	13332000	4236500	9096000	15803000	8475000	7327800	56040000	25332000	30707000	101130000	50973000	50157000	20605	4422	19501	126684;126685;126686;126687	171767;171768;171769;171770;171771;171772	171772			6	
GQILTMANPIIGNGGAPDTTALDELGLSK	1	Oxidation (M)	2882.4695	0.46953788	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.76	100.64	3	1.6446E-08	91239	160511_QHF_FH_JSI12i_1	58.087	54.812			0.91567	0.89849	15.04	4	0	Median	1.1363	0.93491	NaN	1	0	Median	0.72578	0.86349	NaN	1	0	Median	0.79384	0.77581	NaN	1	0	Median	1.0562	1.1086	NaN	1	0	Median	290400000	148020000	142380000	71026000	31693000	39333000	55197000	32962000	22235000	86013000	44278000	41735000	78160000	39086000	39074000	20606	1372	19502	126688;126689;126690;126691	171773;171774;171775;171776	171776		1010	4	
GQILTMANPIIGNGGAPDTTALDELGLSK	1	Unmodified	2866.4746	0.47462326	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				101.48	101.3	3	2.1581E-19	89479	160511_QHF_FH_JSI9i_1	107.3	100.86			0.84573	0.69018	NaN	1	0	Median	0.84573	0.69018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	308800000	202550000	106250000	308800000	202550000	106250000	0	0	0	0	0	0	0	0	0	20607	1372	19502	126692	171777	171777			1	
GQILWFR	0	Unmodified	918.50757	0.50757178	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.26			2					1	1	1	1	1	1	73.013	67.674	2	0.0010419	35138	160513_QHF_FH_JSI12Kac_6	113.25	67.534			1.2683	1.1492	18.135	4	0	Median	1.3695	1.1126	NaN	1	0	Median	1.2744	1.4211	NaN	1	0	Median	1.2622	1.1869	NaN	1	0	Median	0.87129	0.91583	NaN	1	0	Median	206860000	92116000	114740000	77744000	31686000	46059000	1183800	496930	686850	58141000	23537000	34605000	69786000	36397000	33389000	20608	1239;1168;2177;2758	19503	126693;126694;126695;126696	171778;171779;171780;171781	171781			4	
GQINNSIK	1	Unmodified	872.47158	0.4715802	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6		4	1				3	1		2	2	2	3	12.06	8.68	2	9.9443E-05	6154	160513_QHF_FH_JSI11Kac_4	125.31	95.148			0.90206	0.93996	7.2797	8	0	Median	1.1147	0.94638	NaN	1	0	Median	0.82678	0.98476	6.9004	2	0	Median	0.94992	0.93618	0.88747	2	0	Median	0.8525	0.9323	11.049	3	0	Median	1026100000	550140000	476010000	246030000	126820000	119210000	210200000	113930000	96276000	261050000	136900000	124150000	308860000	172490000	136370000	20609	1464	19504	126697;126698;126699;126700;126701;126702;126703;126704;126705	171782;171783;171784;171785;171786;171787;171788;171789;171790;171791;171792;171793;171794;171795;171796;171797	171787			15	
GQIPEIK	1	Unmodified	783.44905	0.44905385	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	28.413	28.207	2	0.0046147	24736	160511_QHF_FH_JSI9i_1	85.265	14.352			1.7122	1.6889	0.035221	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7122	1.6889	0.035221	2	2	Median	NaN	NaN	NaN	0	0	Median	304120000	117490000	186630000	0	0	0	0	0	0	304120000	117490000	186630000	0	0	0	20610	1961	19505	126706;126707;126708;126709;126710	171798;171799;171800;171801;171802	171802			5	
GQIQLDPQTVETK	1	Unmodified	1455.7569	0.75692277	2335	Q12979	ABR	Active breakpoint cluster region-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	47.485	46.806	2	0.00018658	42100	160511_QHF_FH_JSI10i_1	81.525	65.635			0.75871	0.81499	13.257	4	1	Median	1.1031	0.89288	NaN	1	1	Median	0.79215	0.89797	NaN	1	0	Median	0.70974	0.68964	NaN	1	0	Median	0.72667	0.7439	NaN	1	0	Median	115730000	60840000	54888000	24496000	11900000	12596000	31858000	17108000	14750000	26199000	14453000	11746000	33175000	17379000	15796000	20611	2335	19506	126711;126712;126713;126714	171803;171804	171803			2	
GQIQVILGPMFSGK	1	Unmodified	1473.8014	0.80137054	809	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	89.935	89.739	2	0.00012671	77927	160511_QHF_FH_JSI12i_3	100.93	85.959			1.1452	1.132	27.727	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.56101	0.66515	NaN	1	1	Median	0.9244	0.85777	NaN	1	0	Median	1.1452	1.1574	NaN	1	0	Median	49035000	26629000	22407000	0	0	0	6771300	4600200	2171100	13096000	6535800	6560500	29168000	15493000	13675000	20612	809	19507	126715;126716;126717;126718;126719	171805;171806;171807;171808;171809;171810;171811	171811			7	
GQISETLK	1	Unmodified	874.476	0.47599688	1155	P19367	HK1	Hexokinase-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	4.8966	4.7043	3	0.046988	2482	160511_QHF_FH_JSI10i_3	16.203	1.996			0.82269	0.8756	16.378	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8748	0.98311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77367	0.77985	NaN	1	0	Median	2060000000	1282400000	777530000	0	0	0	427760000	232540000	195220000	0	0	0	1632200000	1049900000	582320000	20613	1155	19508	126720;126721	171812;171813	171812			2	
GQKVGEFSGANK	2	Acetyl (K)	1262.6255	0.62551466	973	P10599	TXN	Thioredoxin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	32.6	23.898	2	0.0002984	14391	160513_QHF_FH_JSI11Kac_3	89.171	58.917			0.2284	0.22544	94.282	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0031	1.1914	NaN	1	0	Median	0.23992	0.23296	4.6446	2	0	Median	NaN	NaN	NaN	0	0	Median	13982000	10928000	3053700	0	0	0	1994800	1031800	963030	11238000	9147100	2090700	749510	749510	0	20614	973	19509	126722;126723;126724;126725	171814;171815;171816;171817;171818	171814	742;743		5	
GQKVLDSGAPIK	2	Acetyl (K)	1253.698	0.69795133	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.2	0.433					3	1					2		2	48.51	39.279	2	0.0049199	18088	160513_QHF_FH_JSI12Kac_2	63.283	52.454			0.87659	1.0177	3.2298	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85733	1.0059	4.4684	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93125	1.0177	NaN	1	0	Median	16750000	9166100	7583700	0	0	0	14658000	8540500	6117000	0	0	0	2092300	625650	1466700	20615	851	19510	126726;126727;126728;126729	171819;171820;171821	171820	508		3	
GQKYFDSGDYNMAK	2	Acetyl (K);Oxidation (M)	1680.709	0.7089863	373;1874	O43768;P56211	ENSA;ARPP19	Alpha-endosulfine;cAMP-regulated phosphoprotein 19	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	47.862	38.649	2	0.00051925	21185	160513_QHF_FH_JSI12Kac_3	82.171	73.217			0.91107	1.0334	15.112	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91107	1.0334	NaN	1	0	Median	0.81584	0.82699	NaN	1	0	Median	1.0158	1.1033	NaN	1	0	Median	11704000	6738900	4965500	0	0	0	2189700	1227500	962140	6191200	3842000	2349200	3323500	1669400	1654100	20616	373;1874	19511	126730;126731;126732	171822;171823;171824;171825	171824	190	146	4	
GQKYFDSGDYNMAK	2	Acetyl (K)	1664.7141	0.71407167	373;1874	O43768;P56211	ENSA;ARPP19	Alpha-endosulfine;cAMP-regulated phosphoprotein 19	no	no	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	59.342	50.03	2	0.00058917	25792	160513_QHF_FH_JSI10Kac_3	87.363	80.475			1.0452	1.1591	12.56	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93095	1.0606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1735	1.2668	NaN	1	0	Median	3898900	2196200	1702700	0	0	0	2167600	1380200	787410	0	0	0	1731300	816010	915270	20617	373;1874	19511	126733;126734	171826;171827;171828	171828	190		3	
GQLACGSVR	0	Unmodified	946.46545	0.46544897	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.233	11.032	2	0.013486	8502	160511_QHF_FH_JSI11i_2	46.129	12.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20618	4819	19512	126735	171829	171829			1	
GQLCELSCSTDYR	0	Unmodified	1587.6657	0.66574127	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.962	39.521	2	6.5392E-05	35543	160511_QHF_FH_JSI11i_1	105.13	94.847			0.9619	0.9364	19.637	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0225	1.1921	NaN	1	0	Median	0.9619	0.89802	NaN	1	0	Median	1.2718	1.3095	NaN	1	0	Median	121210000	63136000	58070000	0	0	0	40305000	21829000	18476000	49958000	30344000	19614000	30944000	10963000	19981000	20619	4325	19513	126736;126737;126738	171830;171831;171832;171833;171834	171830			5	
GQLEALQVDGGRLEAELR	0	Unmodified	1953.028	0.02795267	71	CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	73.318	72.9	2;3	1.677E-07	63326	160511_QHF_FH_JSI12i_3	98.796	78.146		+	1.0503	1.1092	12.432	7	0	Median	1.2917	1.133	NaN	1	0	Median	0.89679	1.1058	20.966	2	0	Median	1.2922	1.1884	9.7615	2	0	Median	0.95341	0.98411	4.1169	2	0	Median	1099800000	538070000	561760000	18255000	7606300	10649000	202000000	104890000	97110000	455630000	214750000	240880000	423940000	210820000	213120000	20620	71	19514	126739;126740;126741;126742;126743;126744;126745	171835;171836;171837;171838;171839;171840;171841;171842;171843;171844;171845	171845			10	
GQLELLR	0	Unmodified	827.4865	0.48650199	3044	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	42.216	41.28	2	0.023222	35322	160511_QHF_FH_JSI11i_2	55.676	16.884			0.96221	0.95378	15.57	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0423	1.2911	NaN	1	0	Median	0.96221	0.95378	NaN	1	0	Median	0.95632	1.0421	NaN	1	0	Median	77159000	39667000	37491000	0	0	0	21651000	9256300	12395000	32853000	17579000	15274000	22655000	12832000	9822600	20621	3044	19515	126746;126747;126748	171846;171847;171848;171849	171848			4	
GQLESHWYVR	0	Unmodified	1273.6204	0.62036971	5844				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.247	29.68	2	7.2062E-05	26774	160511_QHF_FH_JSI12i_1	88.819	48.095	+		1.1769	1.1887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1769	1.1887	NaN	1	0	Median	180230000	98766000	81468000	0	0	0	0	0	0	0	0	0	180230000	98766000	81468000	20622	5844	19516	126749	171850	171850			1	
GQLESIVENIR	0	Unmodified	1256.6725	0.67246486	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS			4.33	4.78		4	1					1		3	3			66.151	63.326	2	3.4887E-09	32614	160513_QHF_FH_JSI9Kac_5	121.6	73.78			1.1433	1.0642	7.6421	5	4	Median	1.2115	1.0651	10.059	3	2	Median	0.85562	1.0448	2.6048	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	662080000	359380000	302700000	257430000	119850000	137580000	404650000	239530000	165120000	0	0	0	0	0	0	20623	1129	19517	126750;126751;126752;126753;126754;126755	171851;171852;171853;171854;171855;171856;171857	171853			7	
GQLGDAVSGTDVR	0	Unmodified	1273.6262	0.62624295	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	2					2				1		2	1	34.488	29.712	2	0.00026548	25997	160511_QHF_FH_JSI9i_1	101.35	44.971			1.0195	0.94459	47.041	4	1	Median	0.79806	0.65044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97828	0.94988	62.081	2	0	Median	1.3023	1.3718	NaN	1	0	Median	280570000	159730000	120850000	135380000	77990000	57393000	0	0	0	143720000	80993000	62726000	1470300	743000	727320	20624	5463	19518	126756;126757;126758;126759	171858;171859;171860;171861	171860			3	
GQLGHGDTK	1	Unmodified	911.44609	0.44609374	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.48	4	5	4					2		2	4	6	3	2.4904	0.90116	2;3	4.1202E-06	1361	160511_QHF_FH_JSI10i_2	125.16	84.809			1.0456	1.0338	55.551	14	4	Median	1.2403	1.0398	2.1179	2	0	Median	0.85421	1.0434	54.85	3	1	Median	1.3222	1.3037	80.452	6	3	Median	0.86134	0.94756	2.1579	3	0	Plateau	739810000	378130000	361680000	79154000	33775000	45379000	269000000	142900000	126100000	312800000	158450000	154350000	78858000	43007000	35851000	20625	5200	19519	126760;126761;126762;126763;126764;126765;126766;126767;126768;126769;126770;126771;126772;126773;126774	171862;171863;171864;171865;171866;171867;171868;171869;171870;171871;171872;171873;171874;171875;171876;171877;171878;171879;171880;171881	171880			20	
GQLGNWMSPADFQR	0	Unmodified	1605.7358	0.73581017	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	2	3	72.317	71.539	2	8.0426E-10	63808	160511_QHF_FH_JSI11i_3	147.91	139.69			1.4846	1.4265	22.285	7	1	Median	1.9447	1.6642	21.798	2	1	Median	1.296	1.5299	24.498	2	0	Median	1.5042	1.4485	21.82	2	0	Median	1.0679	1.0574	NaN	1	0	Median	245860000	103840000	142020000	46086000	12940000	33146000	53128000	23763000	29365000	103500000	47731000	55773000	43141000	19407000	23734000	20626	2768	19520	126775;126776;126777;126778;126779;126780;126781;126782;126783	171882;171883;171884;171885;171886;171887;171888;171889;171890;171891;171892;171893;171894;171895	171883			14	
GQLHVDGQK	1	Unmodified	980.50394	0.50394297	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	7.9346	7.6802	2	6.1063E-08	5489	160511_QHF_FH_JSI9i_2	149.57	79.574			1.0497	0.93127	22.95	6	3	Median	1.0761	0.93127	6.6398	2	1	Median	0.51998	0.63878	NaN	1	1	Median	0.88411	0.85469	32.561	2	1	Median	1.0815	1.0821	NaN	1	0	Median	514000000	253040000	260960000	143160000	67124000	76037000	89517000	56354000	33163000	191170000	88118000	103050000	90157000	41448000	48709000	20627	241	19521	126784;126785;126786;126787;126788;126789	171896;171897;171898;171899;171900	171897			5	
GQLLHDEK	1	Unmodified	938.48214	0.48214489	5757				yes	yes	0	0	0	0		By MS/MS			14	0							1				1			49.492	39.102	2	0.0412	22039	160513_QHF_FH_JSI10Kac_4	45.718	15.533	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20628	5757	19522	126790	171901	171901			1	
GQLLIFGATNWDLIGR	0	Unmodified	1772.9574	0.95735391	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		95.253	87.693	2;3	9.4099E-54	51329	160513_QHF_FH_JSI10Kac_6	202.32	180.76			0.7495	0.79461	6.9927	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69416	0.83489	NaN	1	0	Median	0.80925	0.75628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	334710000	183090000	151620000	0	0	0	146710000	90420000	56290000	188000000	92670000	95330000	0	0	0	20629	5200	19523	126791;126792;126793	171902;171903;171904	171904			3	
GQLLIFGATNWDLIGRK	1	Unmodified	1901.0523	0.052316927	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	3	2	89.568	81.327	2;3	7.0953E-148	44898	160513_QHF_FH_JSI9Kac_6	227.67	196.7			0.88039	0.90516	13.07	7	0	Median	1.0535	0.89829	NaN	1	0	Median	0.75296	0.89025	2.349	2	0	Median	1.0468	1.0042	27.387	2	0	Median	0.92291	0.9875	7.8783	2	0	Median	3171300000	1724800000	1446500000	643350000	318410000	324940000	1738100000	991840000	746270000	425320000	233370000	191950000	364530000	181190000	183340000	20630	5200	19524	126794;126795;126796;126797;126798;126799;126800;126801	171905;171906;171907;171908;171909;171910;171911;171912;171913;171914	171908			10	
GQLLSWFYYK	1	Unmodified	1303.6601	0.66010926	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	2	1	2	87.128	80.669	2	9.4455E-18	43204	160513_QHF_FH_JSI11Kac_6	171.36	143.62			1.076	1.0872	139.63	6	3	Median	1.1024	0.96275	NaN	1	0	Median	0.85067	1.0052	18.094	2	2	Median	1.1338	1.067	NaN	1	0	Median	5.5938	5.8783	236.02	2	1	Median	2309100000	951860000	1357300000	340550000	162790000	177750000	763420000	439640000	323780000	389370000	191970000	197400000	815790000	157450000	658330000	20631	2993	19525	126802;126803;126804;126805;126806;126807	171915;171916;171917;171918;171919;171920;171921;171922;171923	171916			9	
GQLNADEISLRPAQSFLMNK	1	Unmodified	2231.1369	0.13685119	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				81.606	80.265	3	6.7046E-05	66008	160511_QHF_FH_JSI9i_3	57.338	50.539			1.1142	0.92136	NaN	1	0	Median	1.1142	0.92136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28338000	12754000	15584000	28338000	12754000	15584000	0	0	0	0	0	0	0	0	0	20632	2084	19526	126808	171924	171924			1	
GQLPDYTSPVVLPYSR	0	Unmodified	1790.9203	0.9202997	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		77.118	76.792	2;3	5.52E-11	69877	160511_QHF_FH_JSI11i_1	102.5	82.409			1.2778	1.205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2778	1.205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23867000	6825800	17041000	0	0	0	0	0	0	23867000	6825800	17041000	0	0	0	20633	5505	19527	126809;126810	171925;171926	171926			2	
GQLQDELEK	1	Unmodified	1058.5244	0.52440364	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.044	28.77	2	0.01961	25011	160511_QHF_FH_JSI9i_1	50.473	27.692			0.83509	0.69231	NaN	1	1	Median	0.83509	0.69231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98729000	51404000	47325000	98729000	51404000	47325000	0	0	0	0	0	0	0	0	0	20634	3395	19528	126811	171927	171927			1	
GQLQKLASER	1	Acetyl (K)	1170.6357	0.63568542	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		40.817	30.776	2	0.00079901	18740	160513_QHF_FH_JSI11Kac_4	90.108	60.635			0.12592	0.12211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12592	0.12211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3167700	2990100	177640	0	0	0	0	0	0	3167700	2990100	177640	0	0	0	20635	1526	19529	126812;126813	171928;171929	171928	1546		2	
GQLSFNLRDPELR	0	Unmodified	1543.8107	0.81068967	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			62.481	60.963	3	0.00070473	51074	160511_QHF_FH_JSI10i_3	59.227	46.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20636	1388	19530	126814	171930	171930			1	
GQLSWHQK	1	Unmodified	982.49846	0.49846366	2310	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							4	2	3	2	15.095	14.501	2;3	2.3633E-05	11728	160511_QHF_FH_JSI10i_3	138.9	114.92			1.2879	1.2729	31.344	10	4	Median	1.6002	1.2932	39.073	4	2	Median	1.0216	1.1851	18.704	2	0	Median	1.7753	1.6261	43.098	2	1	Median	1.1131	1.1512	22.678	2	1	Median	871640000	447270000	424370000	179170000	67754000	111410000	166460000	85260000	81204000	138920000	57616000	81301000	387100000	236640000	150450000	20637	2310	19531	126815;126816;126817;126818;126819;126820;126821;126822;126823;126824;126825	171931;171932;171933;171934;171935;171936;171937;171938;171939	171934			9	
GQLTEASSATSK	1	Unmodified	1178.5779	0.57789577	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.034	11.77	2	0.0001614	9376	160511_QHF_FH_JSI11i_1	99.215	66.375			1.0727	1.109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0727	1.109	NaN	1	1	Median	43524000	12519000	31005000	0	0	0	0	0	0	14405000	0	14405000	29119000	12519000	16600000	20638	2546	19532	126826;126827;126828	171940;171941;171942	171940			3	
GQLTTDQVFPYPSVLNEEQTQFLK	1	Unmodified	2781.3861	0.38612583	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									1	2	1	1	101.1	101.01	2;3	1.5427E-90	91731	160511_QHF_FH_JSI10i_1	278.39	264.22			0.91394	0.98034	7.3137	5	3	Median	1.3494	1.1278	NaN	1	1	Median	0.82421	0.97895	6.9342	2	1	Median	0.98878	0.96933	NaN	1	1	Median	0.91394	0.98034	NaN	1	0	Median	1286200000	689120000	597050000	147370000	41161000	106210000	487010000	277820000	209190000	247270000	157050000	90221000	404510000	213080000	191430000	20639	1675	19533	126829;126830;126831;126832;126833	171943;171944;171945;171946	171945			4	
GQLVAVGK	1	Unmodified	770.46504	0.46503826	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		29.676	21.243	2	0.017405	13384	160513_QHF_FH_JSI11Kac_4	66.799	20.136			0.99816	0.99334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99816	0.99334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8536300	5476400	3059900	0	0	0	0	0	0	8536300	5476400	3059900	0	0	0	20640	3173	19534	126834	171947	171947			1	
GQLVPLETVLDMLR	0	Unmodified	1582.8753	0.87526376	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	102.8	102.71	2;3	3.7262E-17	85269	160511_QHF_FH_JSI10i_3	134.13	109.79			1.0429	1.0414	27.337	6	2	Median	1.8389	1.5343	36.413	2	1	Median	0.81995	1.0056	NaN	1	0	Median	1.0429	1.0097	8.4288	2	1	Median	0.89312	1.0119	NaN	1	0	Median	1042600000	451770000	590840000	190030000	61794000	128240000	204450000	98958000	105490000	323350000	144450000	178900000	324770000	146560000	178210000	20641	776	19535	126835;126836;126837;126838;126839;126840;126841	171948;171949;171950;171951;171952;171953;171954	171950			7	
GQMDQPANMPDSILLEAK	1	Unmodified	1956.9285	0.9284979	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.262	76.919	2	5.4402E-11	69645	160511_QHF_FH_JSI10i_1	161.76	146			0.7773	0.89649	28.166	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.7773	0.89649	NaN	1	1	Median	0.54088	0.52249	NaN	1	1	Median	0.60157	0.59543	NaN	1	1	Median	52315000	32644000	19671000	0	0	0	27067000	13433000	13634000	12554000	9405500	3148300	12694000	9804900	2889100	20642	3260	19536	126842;126843;126844;126845	171955;171956;171957;171958	171957			4	
GQMEEQFWR	0	Unmodified	1209.5237	0.52369213	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	48.542	47.583	2	0.0019789	41940	160511_QHF_FH_JSI10i_2	66.692	57.829			0.90316	0.98866	8.9745	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72181	0.8838	NaN	1	0	Median	1.0606	1.0554	NaN	1	0	Median	0.90316	0.98866	NaN	1	0	Median	73183000	39447000	33736000	0	0	0	23501000	12247000	11254000	30362000	16105000	14257000	19320000	11095000	8225100	20643	560	19537	126846;126847;126848	171959	171959			1	
GQMEVWDVK	1	Unmodified	1090.5117	0.51173046	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								3	2	3	2	49.485	48.759	2	7.6591E-07	43946	160511_QHF_FH_JSI11i_1	115.71	73.116			1.6556	1.5629	22.584	5	5	Median	1.9818	1.6618	23.024	2	2	Median	1.8175	2.1315	NaN	1	1	Median	1.4263	1.3899	16.593	2	2	Median	NaN	NaN	NaN	0	0	Median	790460000	258120000	532340000	204980000	64781000	140200000	251540000	73311000	178230000	333930000	120030000	213910000	0	0	0	20644	4535	19538	126849;126850;126851;126852;126853;126854;126855;126856;126857;126858	171960;171961;171962;171963;171964;171965;171966;171967;171968;171969	171961			10	
GQMGPTEQGPYAK	1	Unmodified	1362.6238	0.6238001	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	23.061	22.574	2	4.2055E-06	19553	160511_QHF_FH_JSI11i_1	124.1	111.87			1.3921	1.1376	23.228	5	4	Median	1.4223	1.1376	NaN	1	0	Median	0.78927	0.92597	18.621	2	2	Median	1.3921	1.3325	NaN	1	1	Median	1.4174	1.4862	NaN	1	1	Median	274830000	120160000	154670000	41430000	13997000	27433000	109710000	60282000	49433000	46582000	15196000	31386000	77099000	30685000	46414000	20645	4237	19539	126859;126860;126861;126862;126863	171970;171971;171972;171973;171974;171975	171970			6	
GQMLGLGNPSFSDPFTGGGR	0	Unmodified	1993.9316	0.93160944	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.17	0.687	1	3	2							1		3	2	87.833	87.425	2	8.708E-25	76073	160511_QHF_FH_JSI12i_3	175.28	162.51			1.1891	1.1346	9.8401	6	0	Median	1.2671	1.1059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2243	1.1714	10.314	3	0	Median	1.0238	1.0725	11.59	2	0	Median	246920000	121890000	125030000	57242000	25782000	31461000	0	0	0	116150000	57399000	58753000	73527000	38713000	34814000	20646	5495	19540	126864;126865;126866;126867;126868;126869	171976;171977;171978;171979;171980;171981;171982;171983;171984;171985;171986;171987	171987			12	
GQMQKPFEDASFALR	1	Unmodified	1723.8352	0.83518986	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	59.626	59.031	3	0.00081862	49449	160511_QHF_FH_JSI10i_3	68.944	47.112			0.7388	0.70383	21.466	3	2	Median	NaN	NaN	NaN	0	0	Median	0.84114	0.97339	NaN	1	1	Median	0.7388	0.70383	NaN	1	0	Median	0.64848	0.6487	NaN	1	1	Median	229940000	132390000	97557000	0	0	0	42154000	21443000	20711000	127420000	77722000	49700000	60367000	33220000	27147000	20647	2433	19541	126870;126871;126872	171988;171989;171990;171991	171990			4	
GQNALVELQTQRPIALELYK	1	Unmodified	2283.2587	0.25868089	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		85.319	84.724	3	3.1359E-08	70836	160511_QHF_FH_JSI10i_3	99.569	86.721			0.81585	0.81298	22.586	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.94059	1.1039	11.014	2	1	Median	0.81152	0.76463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106520000	60907000	45616000	0	0	0	48674000	28381000	20293000	57850000	32526000	25323000	0	0	0	20648	5610	19542	126873;126874;126875	171992;171993;171994;171995	171993			4	
GQNDLMGTAEDFADQFLR	0	Unmodified	2026.9055	0.90545427	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								2	3	4	3	97.452	97.281	2;3	9.4965E-297	92748	160511_QHF_FH_JSI10i_1	370.98	349.22			1.0398	1.0699	13.577	11	0	Median	1.374	1.1742	NaN	1	0	Median	0.82113	0.96928	14.285	3	0	Median	1.0521	1.0579	20.213	4	0	Median	0.9094	1.0087	5.9547	3	0	Plateau	1368200000	659110000	709070000	163250000	59440000	103810000	434810000	228880000	205930000	374690000	169170000	205520000	395430000	201620000	193810000	20649	271	19543	126876;126877;126878;126879;126880;126881;126882;126883;126884;126885;126886;126887	171996;171997;171998;171999;172000;172001	172000			5	
GQNLAKITQQMPK	2	Acetyl (K)	1497.7973	0.79734779	2147	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		64.759	53.695	2	0.0068375	30129	160513_QHF_FH_JSI11Kac_4	66.595	51.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1001700	1001700	0	0	0	0	0	0	0	1001700	1001700	0	0	0	0	20650	2147	19544	126888	172002	172002	2250		1	
GQNLHQILK	1	Unmodified	1049.5982	0.5981777	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.664	20.665	2	5.2624E-05	17004	160511_QHF_FH_JSI12i_3	116.73	87.577			2.1959	2.1793	28.392	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8071	2.6638	NaN	1	1	Median	1.7178	1.7829	NaN	1	1	Median	171750000	60271000	111480000	0	0	0	0	0	0	56720000	15294000	41426000	115030000	44977000	70054000	20651	2993	19545	126889;126890	172003;172004	172004			2	
GQNLLLTNLQTIQGILER	0	Unmodified	2023.1426	0.1425885	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.3	102.15	3	5.8577E-06	84804	160511_QHF_FH_JSI10i_3	88.264	77.671			0.69446	0.81195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69446	0.81195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17862000	10708000	7154900	0	0	0	17862000	10708000	7154900	0	0	0	0	0	0	20652	1016	19546	126891	172005	172005			1	
GQNLLQTQDHAK	1	Unmodified	1351.6844	0.68442653	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		3	2	15.7	15.562	2;3	4.1301E-50	12824	160511_QHF_FH_JSI11i_3	190.86	154.3			1.1952	1.1899	16.677	5	2	Median	1.0546	0.90417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2685	1.1776	17.905	2	1	Median	1.2645	1.2536	7.3736	2	1	Median	303230000	135390000	167840000	41301000	20780000	20521000	0	0	0	125060000	49335000	75723000	136870000	65273000	71598000	20653	1576	19547	126892;126893;126894;126895;126896;126897	172006;172007;172008;172009;172010;172011	172008			6	
GQNPNATFGEVSK	1	Unmodified	1347.6419	0.64189301	613	O94842;O15405;O94900	TOX4;TOX3;TOX	TOX high mobility group box family member 4;TOX high mobility group box family member 3;Thymocyte selection-associated high mobility group box protein TOX	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	27.356	26.774	2	3.4225E-15	23578	160511_QHF_FH_JSI11i_1	157.38	136.68			1.1922	0.9037	27.544	4	2	Linear	1.2957	1.087	NaN	1	1	Median	0.86697	1.0308	NaN	1	0	Median	1.0969	1.0204	NaN	1	0	Median	1.7605	1.8089	NaN	1	1	Median	239180000	111380000	127800000	63880000	24022000	39857000	59868000	41034000	18834000	67881000	30826000	37054000	47552000	15496000	32055000	20654	613	19548	126898;126899;126900;126901;126902	172012;172013;172014;172015;172016	172012			4	
GQNQDYR	0	Unmodified	879.38349	0.38349348	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.21	0.409	26	7								11	7	5	10	0.75222	0.39539	2	5.4118E-14	425	160511_QHF_FH_JSI10i_1	170.73	148.59			0.98136	0.98091	11.743	28	4	Median	1.2494	1.0375	10.769	10	0	Median	0.82021	0.97826	18.871	6	1	Median	0.95499	0.93937	6.3008	5	1	Median	0.91615	0.96172	10.308	7	2	Median	2800200000	1418900000	1381300000	475570000	219540000	256030000	738410000	392570000	345840000	596960000	296450000	300500000	989230000	510300000	478940000	20655	1154	19549	126903;126904;126905;126906;126907;126908;126909;126910;126911;126912;126913;126914;126915;126916;126917;126918;126919;126920;126921;126922;126923;126924;126925;126926;126927;126928;126929;126930;126931;126932;126933;126934;126935	172017;172018;172019;172020;172021;172022;172023;172024;172025;172026;172027;172028;172029;172030;172031;172032;172033;172034;172035;172036;172037;172038;172039;172040;172041;172042;172043;172044;172045;172046;172047;172048;172049;172050;172051;172052;172053;172054;172055;172056;172057;172058;172059;172060;172061;172062;172063	172043			47	
GQNQDYRGGK	1	Unmodified	1121.5214	0.52138394	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	4.78		3	6					2		1	2	5	3	4.3795	2.5425	2;3	2.0683E-05	2093	160511_QHF_FH_JSI11i_3	79.201	64.058			1.2313	1.4109	60.81	11	1	Median	1.0429	0.88482	NaN	1	0	Median	1.2426	1.4729	1.0579	2	0	Median	1.2313	1.188	69.859	5	1	Median	1.2704	1.4109	81.223	3	0	Median	958220000	462260000	495950000	212910000	113540000	99374000	463880000	208720000	255170000	186250000	89626000	96620000	95172000	50383000	44789000	20656	1154	19550	126936;126937;126938;126939;126940;126941;126942;126943;126944;126945;126946	172064;172065;172066;172067;172068;172069;172070;172071;172072;172073;172074;172075;172076	172065			13	
GQNQPVLNITNK	1	Unmodified	1324.7099	0.709913	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.62	4	5	2			3	3			2	5	4	6	40.724	36.604	2	3.3433E-78	32503	160511_QHF_FH_JSI11i_1	247.08	233.32			0.88479	0.96467	12.153	16	3	Median	1.0679	0.86701	19.15	2	0	Median	0.78949	0.93285	3.8908	4	0	Median	0.9375	0.92459	9.3609	4	1	Median	0.92311	0.99406	17.051	6	2	Median	4495500000	2291700000	2203800000	1085800000	569520000	516240000	1062200000	520930000	541250000	1179800000	617520000	562280000	1167800000	583750000	584010000	20657	1372	19551	126947;126948;126949;126950;126951;126952;126953;126954;126955;126956;126957;126958;126959;126960;126961;126962;126963	172077;172078;172079;172080;172081;172082;172083;172084;172085;172086;172087;172088;172089;172090;172091;172092;172093;172094;172095;172096;172097;172098;172099;172100;172101;172102;172103;172104	172077			28	
GQNSLALHK	1	Unmodified	966.52468	0.52467841	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	3.99		2	7						1	4	3	1	2	11.816	11.462	2;3	3.5052E-23	8973	160511_QHF_FH_JSI11i_3	191.17	148.26			0.81476	0.82375	28.731	7	1	Median	1.1532	0.97105	63.941	2	1	Median	0.65741	0.77516	2.1663	2	0	Median	1.064	1.0156	NaN	1	0	Median	0.8846	0.89914	12.385	2	0	Median	1493700000	626690000	866980000	88981000	39948000	49033000	209030000	120490000	88540000	187010000	82873000	104140000	1008700000	383380000	625270000	20658	993	19552	126964;126965;126966;126967;126968;126969;126970;126971;126972;126973	172105;172106;172107;172108;172109;172110;172111;172112;172113;172114;172115;172116;172117;172118;172119;172120	172105			16	
GQNWLIYTYGVTNSGK	1	Unmodified	1799.8842	0.88424855	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	80.845	71.616	2;3	2.7459E-43	39351	160513_QHF_FH_JSI11Kac_6	227.93	169.56			0.98388	0.96014	7.1228	5	0	Median	1.0976	0.95996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9482	0.9146	6.8708	2	0	Median	0.98352	1.0355	0.0099804	2	0	Median	211470000	106670000	104800000	36042000	17763000	18280000	0	0	0	96157000	48324000	47833000	79268000	40580000	38688000	20659	661	19553	126974;126975;126976;126977;126978	172121;172122;172123;172124;172125;172126;172127;172128	172123			8	
GQPAIIDGELYNEVK	1	Unmodified	1644.8359	0.83590137	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								2	3	1	2	67.13	66.515	2;3	4.4605E-52	60073	160511_QHF_FH_JSI10i_1	221.09	211.45			0.81977	0.84146	21.123	7	1	Median	0.94664	0.78177	20.062	2	1	Median	0.57725	0.69057	27.947	2	0	Median	0.9908	0.96074	NaN	1	0	Median	0.87646	0.90386	20.686	2	0	Median	3355300000	1780200000	1575100000	960930000	507020000	453910000	992720000	607630000	385090000	660910000	330260000	330650000	740750000	335300000	405460000	20660	5497	19554	126979;126980;126981;126982;126983;126984;126985;126986	172129;172130;172131;172132;172133;172134;172135;172136;172137;172138;172139;172140;172141;172142;172143;172144;172145;172146;172147;172148;172149	172139			21	
GQPCSQNYR	0	Unmodified	1108.472	0.47199091	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	6.953	6.7195	2	0.0092309	4689	160511_QHF_FH_JSI12i_1	51.346	41.359			0.92966	0.90625	23.54	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72257	0.84334	NaN	1	0	Median	0.92966	0.90625	NaN	1	0	Median	1.236	1.308	NaN	1	0	Median	151200000	75116000	76087000	0	0	0	47906000	24786000	23120000	53167000	29385000	23782000	50130000	20945000	29185000	20661	4682	19555	126987;126988;126989	172150;172151;172152	172151			3	
GQPDEELKPK	2	Unmodified	1139.5823	0.58225287	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.55	8	2	1				1			3	3	2	4	14.413	13.389	2;3	0.00040403	10782	160511_QHF_FH_JSI9i_1	91.265	70.936			0.99717	1.0254	36.223	12	0	Median	1.3045	1.0909	12.684	3	0	Median	0.80306	0.9327	12.971	3	0	Plateau	1.0457	1.0171	4.3871	2	0	Median	0.87294	0.93706	66.441	4	0	Median	1920400000	992080000	928280000	486440000	195480000	290950000	449640000	223710000	225930000	464770000	271700000	193070000	519510000	301180000	218320000	20662	1823	19556	126990;126991;126992;126993;126994;126995;126996;126997;126998;126999;127000;127001	172153;172154;172155;172156;172157;172158;172159;172160;172161;172162;172163;172164;172165;172166;172167;172168	172163			16	
GQPDEELKPK	2	Acetyl (K)	1181.5928	0.59281755	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	34.706	26.076	2	0.0039318	12606	160513_QHF_FH_JSI12Kac_2	73.233	73.233			0.74891	0.81295	32.976	6	0	Median	NaN	NaN	NaN	0	0	Median	0.84506	1.0056	13	2	0	Median	0.51045	0.49707	4.2447	2	0	Median	0.76255	0.81295	5.0322	2	0	Median	49301000	28217000	21083000	0	0	0	13051000	7020900	6030200	21161000	13784000	7377300	15088000	7412500	7675900	20663	1823	19556	127002;127003;127004;127005;127006;127007	172169;172170;172171;172172;172173;172174	172174	1838		6	
GQPDVVVK	1	Unmodified	840.47052	0.47051757	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	21.029	17.566	2	0.0014339	14688	160511_QHF_FH_JSI9i_1	89.55	62.588			0.82051	0.73747	20.787	7	2	Median	0.90569	0.73747	NaN	1	0	Median	0.72184	0.84988	27.788	2	0	Median	0.75762	0.73162	35.863	2	1	Median	0.73411	0.78014	16.548	2	1	Median	1849700000	1186100000	663540000	385690000	221650000	164030000	498360000	350340000	148020000	519710000	345870000	173840000	445930000	268280000	177650000	20664	1249	19557	127008;127009;127010;127011;127012;127013;127014	172175;172176;172177;172178;172179;172180;172181;172182;172183;172184;172185;172186;172187;172188;172189	172185			15	
GQPDVVVKEDEEYK	2	Unmodified	1633.7835	0.78353145	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.468	30.867	2	4.9336E-09	27440	160511_QHF_FH_JSI10i_1	148.68	129.44			1.0852	1.0297	23.219	4	2	Median	1.0092	0.85832	NaN	1	1	Median	0.73332	0.85905	NaN	1	0	Median	1.3732	1.3267	NaN	1	1	Median	1.1669	1.2342	NaN	1	0	Median	139370000	67344000	72031000	28965000	12729000	16236000	40811000	21725000	19086000	33589000	12490000	21099000	36011000	20400000	15610000	20665	1249	19558	127015;127016;127017;127018	172190;172191;172192;172193;172194;172195	172194			6	
GQPFDVGPR	0	Unmodified	971.48248	0.48247924	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.171	33.129	2	0.0026559	28879	160511_QHF_FH_JSI9i_2	63.673	40.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20666	1289	19559	127019	172196	172196			1	
GQPGDIYHQTWAR	0	Unmodified	1527.7219	0.72187466	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	38.55	38.43	2;3	5.8117E-07	32678	160511_QHF_FH_JSI12i_3	93.258	79.488			1.0375	1.0157	6.9889	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1171	1.0569	NaN	1	0	Median	1.0596	1.0702	9.8306	2	1	Median	225780000	120210000	105570000	0	0	0	0	0	0	84162000	43136000	41026000	141620000	77074000	64547000	20667	802	19560	127020;127021;127022;127023;127024	172197;172198;172199;172200;172201;172202;172203	172203			7	
GQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYER	0	Unmodified	3693.6754	0.67540134	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		72.345	71.848	3	9.3801E-19	65053	160511_QHF_FH_JSI10i_1	83.293	78.484			1.0598	1.1779	10.937	3	0	Plateau	1.5416	1.2548	NaN	1	0	Median	0.93098	1.1057	NaN	1	0	Median	1.0598	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162010000	65605000	96409000	61309000	20416000	40893000	61110000	30431000	30679000	39594000	14758000	24836000	0	0	0	20668	4197	19561	127025;127026;127027	172204;172205;172206;172207;172208	172205			5	
GQPIYIQFSNHK	1	Unmodified	1430.7306	0.73064844	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.53		10	8					6	8	9	8	7	8	49.997	45.022	2;3	4.225E-91	24817	160513_QHF_FH_JSI10Kac_6	250.96	204.5			1.0312	1.0257	9.5904	31	4	Median	1.1845	0.98709	9.2426	9	3	Median	0.87942	1.0603	5.3732	8	0	Median	1.0515	1.0267	5.4445	7	0	Median	0.91857	0.96291	14.103	7	1	Median	23480000000	11142000000	12338000000	3145400000	1467300000	1678100000	4116200000	2273900000	1842200000	6727700000	2900700000	3827000000	9490800000	4500000000	4990800000	20669	1281	19562	127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039;127040;127041;127042;127043;127044;127045;127046;127047;127048;127049;127050;127051;127052;127053;127054;127055;127056;127057;127058;127059	172209;172210;172211;172212;172213;172214;172215;172216;172217;172218;172219;172220;172221;172222;172223;172224;172225;172226;172227;172228;172229;172230;172231;172232;172233;172234;172235;172236;172237;172238;172239;172240;172241;172242;172243;172244;172245;172246;172247;172248;172249;172250;172251;172252;172253;172254;172255;172256;172257;172258;172259;172260;172261;172262;172263;172264;172265;172266;172267;172268;172269;172270;172271;172272;172273;172274;172275;172276;172277;172278;172279;172280;172281;172282;172283;172284;172285;172286;172287;172288;172289	172289			81	
GQPIYIQFSNHKELK	2	Acetyl (K)	1842.9628	0.96283322	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	69.7	60.724	3	1.0504E-16	32981	160513_QHF_FH_JSI11Kac_6	137.19	119.7			0.30321	0.28583	75.991	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1113	1.3066	NaN	1	0	Median	0.30321	0.28583	NaN	1	0	Median	0.57853	0.60973	NaN	1	0	Median	223750000	162780000	60967000	0	0	0	29005000	12186000	16819000	162950000	131450000	31499000	31797000	19147000	12650000	20670	1281	19563	127060;127061;127062	172290;172291;172292;172293;172294;172295	172291	1192;1194		6	
GQPLPDHLQMAVQGK	1	Unmodified	1617.8297	0.82971055	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.642	48.244	3	5.486E-05	41358	160511_QHF_FH_JSI12i_2	84.753	77.872			0.72398	0.81066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72398	0.81066	NaN	1	0	Median	71395000	40289000	31106000	0	0	0	0	0	0	0	0	0	71395000	40289000	31106000	20671	1737	19564	127063	172296	172296			1	
GQPLPETLQLAVQGK	1	Unmodified	1577.8777	0.8777066	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.688	72.353	2	2.0176E-07	65560	160511_QHF_FH_JSI10i_1	90.653	83.391			2.3574	2.2483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3574	2.2483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22834000	6085800	16749000	0	0	0	0	0	0	22834000	6085800	16749000	0	0	0	20672	1736	19565	127064;127065	172297;172298	172298			2	
GQPSEGESR	0	Unmodified	945.41519	0.41518754	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	4.2489	1.1338	2	2.1238E-05	2119	160511_QHF_FH_JSI12i_1	106.42	86.787			1.147	1.0818	54.289	6	0	Median	1.2865	0.30513	NaN	1	0	Median	1.1687	1.3518	NaN	1	0	Median	1.1256	1.1024	10.912	3	0	Median	1.005	1.0616	NaN	1	0	Median	615210000	308030000	307190000	3644600	1420800	2223700	203470000	96114000	107350000	195600000	97922000	97675000	212510000	112570000	99938000	20673	3	19566	127066;127067;127068;127069;127070;127071	172299;172300;172301;172302;172303;172304;172305;172306;172307	172304			9	
GQPSNKEDVDDLVSQLR	1	Unmodified	1898.9334	0.93338358	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	59.591	58.998	3	1.816E-06	50759	160511_QHF_FH_JSI12i_3	90.714	60.981			0.8844	0.89759	11.146	5	1	Median	NaN	NaN	NaN	0	0	Median	0.70327	0.84818	NaN	1	0	Median	1.0325	0.99543	17.528	2	1	Median	0.87089	0.91543	2.7827	2	0	Median	258720000	132260000	126460000	0	0	0	57000000	30013000	26986000	104220000	43881000	60336000	97501000	58365000	39137000	20674	1016	19567	127072;127073;127074;127075;127076;127077	172308;172309;172310;172311;172312;172313	172313			6	
GQPSSAEPEDAAGSR	0	Unmodified	1457.6383	0.63826419	2206	Q03169	TNFAIP2	Tumor necrosis factor alpha-induced protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	11.71	11.215	2	0.00043636	8700	160511_QHF_FH_JSI9i_1	91.961	65.363			1.0872	1.0768	28.056	3	3	Median	0.97315	0.79602	NaN	1	1	Median	1.2232	1.3943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0872	1.0768	NaN	1	1	Median	51496000	29090000	22406000	15165000	8578100	6586500	21457000	11973000	9484100	0	0	0	14874000	8538300	6335800	20675	2206	19568	127078;127079;127080;127081	172314;172315;172316;172317	172316			4	
GQPSSSNAGNK	1	Unmodified	1045.4789	0.47885043	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	0.74101	0.52436	2	0.044253	525	160511_QHF_FH_JSI12i_1	49.715	39.005			0.87363	0.8848	81.328	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6265	1.5725	NaN	1	0	Median	0.46925	0.49784	NaN	1	0	Median	29082000	16673000	12409000	0	0	0	0	0	0	5565400	1843600	3721800	23516000	14830000	8687000	20676	4634	19569	127082;127083	172318	172318			0	
GQPVAPYNTTQFLMDDHDQEEPDLK	1	Unmodified	2887.2971	0.29705282	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	73.716	73.354	3	4.3371E-11	66894	160511_QHF_FH_JSI12i_1	87.659	85.219			0.89035	1.0554	9.3488	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89035	1.0554	NaN	1	0	Median	0.95683	0.93579	NaN	1	0	Median	1.0972	1.125	NaN	1	0	Median	174340000	76229000	98106000	0	0	0	62861000	29213000	33648000	56899000	22628000	34271000	54574000	24388000	30187000	20677	637	19570	127084;127085;127086	172319;172320;172321;172322;172323	172321			5	
GQQELLYVVPFVAK	1	Unmodified	1589.8817	0.88172935	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	4.18	8	1						1		2	2	3	3	96.141	95.884	2;3	1.0393E-06	86630	160511_QHF_FH_JSI10i_1	135.66	125.43			0.80154	0.80439	24.345	9	1	Median	1.1308	0.979	12.479	2	0	Median	0.64297	0.70845	12.074	2	0	Median	0.85269	0.82852	17.014	2	0	Median	0.80154	0.80439	35.822	3	1	Median	126610000	72997000	53617000	14280000	6716900	7562800	32893000	20321000	12572000	37287000	19881000	17406000	42153000	26078000	16075000	20678	21	19571	127087;127088;127089;127090;127091;127092;127093;127094;127095;127096	172324;172325;172326;172327;172328;172329;172330	172328			7	
GQQGLTR	0	Unmodified	758.4035	0.40350064	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.4449	5.1032	2	0.058845	3095	160511_QHF_FH_JSI12i_1	41.188	4.1995			0.86651	0.8743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86651	0.8743	NaN	1	0	Median	130040000	73447000	56592000	0	0	0	0	0	0	0	0	0	130040000	73447000	56592000	20679	4288	19572	127097	172331	172331			1	
GQQIGKVVQVYR	1	Acetyl (K)	1415.7885	0.78849767	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	1	0	0	1			By MS/MS		14	0							1					1		60.656	49.621	2	0.026035	28200	160513_QHF_FH_JSI11Kac_4	55.064	28.391			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2375200	2375200	0	0	0	0	0	0	0	2375200	2375200	0	0	0	0	20680	1949;5450	19573	127098	172332	172332	1958		1	
GQQLQAERK	1	Unmodified	1056.5676	0.56760585	1445	P35749	MYH11	Myosin-11	yes	yes	0	0	0	1		By MS/MS		By MS/MS	11.5	0.5				2	2						2		2	48.113	38.904	2	4.9109E-08	17954	160513_QHF_FH_JSI12Kac_2	148.07	79.647			0.0052373	0.005363	74.865	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.01674	0.02011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.0078976	0.0084096	78.37	2	2	Median	248340000	247310000	1033400	0	0	0	120250000	119720000	532770	0	0	0	128090000	127590000	500660	20681	1445	19574	127099;127100;127101;127102	172333;172334;172335;172336	172336			4	
GQQLVMMPNK	1	Unmodified	1144.5733	0.57328486	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.41	4	5					3			2	2	4	4	41.09	40.29	2	5.6465E-14	35845	160511_QHF_FH_JSI9i_1	157.86	85.313			1.0714	1.1829	32.279	8	3	Median	1.3346	1.1266	40.224	2	1	Median	0.86963	1.0561	32.571	2	1	Median	1.0897	1.0766	19.484	2	0	Median	1.4398	1.5713	46.315	2	1	Median	2538200000	1372800000	1165400000	430670000	194530000	236140000	674040000	408030000	266010000	750810000	432520000	318290000	682690000	337710000	344990000	20682	1069;3467	19575	127103;127104;127105;127106;127107;127108;127109;127110;127111;127112;127113;127114	172337;172338;172339;172340;172341;172342;172343;172344;172345;172346;172347;172348;172349;172350;172351;172352;172353	172349			17	
GQQLVMMPNK	1	Oxidation (M)	1160.5682	0.56819948	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	1	0				By MS/MS	1	0	1												1	25.633	25.094	2	0.0013678	22288	160511_QHF_FH_JSI12i_1	82.452	46.509			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20683	1069;3467	19575	127115	172354	172354		715	1	
GQQPEAIR	0	Unmodified	897.46683	0.46682918	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	9.4555	9.0848	2	0.00079816	7002	160511_QHF_FH_JSI12i_1	91.9	58.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20684	5163	19576	127116	172355	172355			1	
GQQQVFKGLNDK	2	Acetyl (K)	1402.7205	0.72047768	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.493						5	7				4	3	5	50.925	40.984	2;3	3.1693E-15	22632	160513_QHF_FH_JSI10Kac_4	133.89	123.52			0.88042	0.95187	100.62	11	2	Median	NaN	NaN	NaN	0	0	Median	0.78554	0.92858	8.7756	4	0	Median	0.88042	0.87376	13.602	3	1	Median	0.98907	1.0921	172.46	4	1	Median	157950000	86304000	71648000	0	0	0	57533000	34012000	23521000	42166000	21719000	20447000	58254000	30573000	27681000	20685	1507	19577	127117;127118;127119;127120;127121;127122;127123;127124;127125;127126;127127;127128	172356;172357;172358;172359;172360;172361;172362;172363;172364;172365;172366;172367;172368;172369;172370;172371;172372;172373	172357	1531;1532		18	
GQQSAEEENFK	1	Unmodified	1265.5524	0.5524093	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	14.603	11.917	2	3.1668E-18	9898	160511_QHF_FH_JSI9i_1	163.64	127.08			1.2173	1.1382	18.779	6	0	Median	1.2596	1.03	NaN	1	0	Median	0.92024	1.0852	NaN	1	0	Median	1.3901	1.3361	22.004	2	0	Median	1.2569	1.3347	23.195	2	0	Median	249800000	115650000	134150000	61595000	27147000	34448000	58580000	30069000	28511000	61318000	27692000	33627000	68308000	30746000	37561000	20686	2601	19578	127129;127130;127131;127132;127133;127134	172374;172375;172376;172377;172378;172379;172380	172379			7	
GQQVFLK	1	Unmodified	818.46504	0.46503826	1194	P21399;O00408	ACO1;PDE2A	Cytoplasmic aconitate hydratase;cGMP-dependent 3',5'-cyclic phosphodiesterase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	25.385	24.422	2	0.0041237	20225	160511_QHF_FH_JSI11i_2	100.07	49.1			0.89395	0.95433	25.2	4	1	Median	1.8087	1.5041	NaN	1	1	Median	0.72504	0.89182	NaN	1	0	Median	1.0045	1.0212	NaN	1	0	Median	0.79556	0.87324	NaN	1	0	Median	340960000	167820000	173140000	13078000	5062500	8015600	66341000	34861000	31480000	181620000	88860000	92763000	79917000	39039000	40878000	20687	1194	19579	127135;127136;127137;127138	172381;172382;172383;172384;172385	172383			5	
GQQYESMDHIQAELSAR	0	Unmodified	1961.8901	0.89013856	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.942	51.415	3	0.001052	44349	160511_QHF_FH_JSI11i_2	59.281	47.38			1.0351	1.0294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0351	1.0294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32225000	10825000	21400000	0	0	0	0	0	0	32225000	10825000	21400000	0	0	0	20688	3560	19580	127139	172386	172386			1	
GQREEVEQMK	1	Unmodified	1232.5819	0.58193529	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							3	2	4	1	9.1899	8.8854	2;3	4.0465E-05	6526	160511_QHF_FH_JSI11i_3	108.43	83.046			0.96672	1.015	31.973	10	4	Median	1.2561	1.0681	17.484	3	2	Median	0.83462	1.015	6.8935	2	0	Median	1.0436	1.0776	31.694	4	2	Median	0.46613	0.47193	NaN	1	0	Median	912550000	441040000	471510000	287840000	121800000	166040000	221700000	116140000	105560000	307160000	157290000	149870000	95846000	45804000	50042000	20689	5159	19581	127140;127141;127142;127143;127144;127145;127146;127147;127148;127149	172387;172388;172389;172390;172391;172392;172393;172394;172395	172387			9	
GQRPETLHER	0	Unmodified	1221.6214	0.62143234	2875	Q5BJF2	TMEM97	Transmembrane protein 97	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				5.7655	5.2425	2;3	0.0034271	3281	160511_QHF_FH_JSI9i_3	72.643	51.741			0.88673	0.72631	NaN	1	0	Median	0.88673	0.72631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22318000	12282000	10036000	22318000	12282000	10036000	0	0	0	0	0	0	0	0	0	20690	2875	19582	127150;127151	172396;172397	172396			2	
GQSDIAITK	1	Unmodified	931.49746	0.4974606	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.8	5.88	3					2					2	3		22.322	19.15	2	0.00081754	16423	160511_QHF_FH_JSI11i_1	84.817	51.46			0.60893	0.59001	29.006	5	2	Median	NaN	NaN	NaN	0	0	Median	0.54256	0.63652	28.493	2	0	Median	0.45315	0.43369	35.081	3	2	Plateau	NaN	NaN	NaN	0	0	Median	370340000	238820000	131520000	0	0	0	157010000	99982000	57028000	213330000	138840000	74494000	0	0	0	20691	1409	19583	127152;127153;127154;127155;127156	172398;172399;172400;172401;172402;172403;172404;172405	172399			8	
GQSDVGVAVFENK	1	Unmodified	1348.6623	0.6622941	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0				By MS/MS	1	0	1												1	49.282	48.616	2	0.00022405	44175	160511_QHF_FH_JSI12i_1	103.44	74.483			0.63565	0.66675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63565	0.66675	NaN	1	1	Median	20828000	11380000	9448100	0	0	0	0	0	0	0	0	0	20828000	11380000	9448100	20692	5221	19584	127157	172406	172406			1	
GQSEDPGSLLSLFR	0	Unmodified	1504.7522	0.75217174	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.48	4.87	3	8	8					4		4	5	7	7	94.77	92.655	2;3	1.5095E-155	82768	160511_QHF_FH_JSI12i_3	300.78	240.38			1.0115	1.0173	13.658	22	3	Median	1.2815	1.0559	12.61	4	0	Median	0.8278	0.98519	1.9814	4	0	Median	1.041	1.0159	2.876	7	2	Median	0.97558	1.0314	22.471	7	1	Median	8695200000	4439800000	4255400000	1399200000	637720000	761470000	1336200000	728050000	608100000	3402100000	1755200000	1646900000	2557700000	1318800000	1238900000	20693	895	19585	127158;127159;127160;127161;127162;127163;127164;127165;127166;127167;127168;127169;127170;127171;127172;127173;127174;127175;127176;127177;127178;127179;127180	172407;172408;172409;172410;172411;172412;172413;172414;172415;172416;172417;172418;172419;172420;172421;172422;172423;172424;172425;172426;172427;172428;172429;172430;172431;172432;172433;172434;172435;172436;172437;172438;172439;172440;172441;172442;172443;172444;172445;172446;172447;172448;172449;172450	172449			44	
GQSEEIQK	1	Unmodified	917.44543	0.44542503	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.39	4	4	1	1	3	4				4	4	5	4	7.666	3.4092	2	1.1098E-14	4142	160511_QHF_FH_JSI12i_1	170.3	125.58			0.94634	1.0393	22.212	17	3	Median	0.99485	0.80226	34.402	4	1	Median	0.88927	1.0625	5.5563	4	0	Median	1.1331	1.1026	19.544	5	2	Median	0.88912	0.96354	8.3664	4	0	Median	12652000000	6335900000	6316400000	3033900000	1255700000	1778200000	3245600000	1743900000	1501700000	2851900000	1378600000	1473300000	3520900000	1957700000	1563100000	20694	2120	19586	127181;127182;127183;127184;127185;127186;127187;127188;127189;127190;127191;127192;127193;127194;127195;127196;127197	172451;172452;172453;172454;172455;172456;172457;172458;172459;172460;172461;172462;172463;172464;172465;172466;172467;172468;172469;172470;172471;172472;172473;172474	172455			24	
GQSEEIQKK	2	Unmodified	1045.5404	0.54038805	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.08	6	8	1				5	3		4	7	6	6	5.3707	1.9399	2;3	7.8474E-07	2635	160511_QHF_FH_JSI12i_2	123.63	84.003			0.89792	0.92275	21.855	22	0	Median	1.5722	1.3303	33.839	4	0	Median	0.81891	0.98139	17.782	7	0	Median	0.92864	0.92275	5.1432	6	0	Median	0.74645	0.84338	12.892	5	0	Median	5528100000	2817500000	2710600000	1456900000	593160000	863730000	2006000000	1151400000	854600000	1454200000	743920000	710280000	610970000	329000000	281980000	20695	2120	19587	127198;127199;127200;127201;127202;127203;127204;127205;127206;127207;127208;127209;127210;127211;127212;127213;127214;127215;127216;127217;127218;127219;127220	172475;172476;172477;172478;172479;172480;172481;172482;172483;172484;172485;172486;172487;172488;172489;172490;172491;172492;172493;172494;172495	172476			20	
GQSEEIQKK	2	Acetyl (K)	1087.551	0.55095274	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	13	0						3					1	1	1	15.732	8.4607	2	0.0012763	6753	160513_QHF_FH_JSI11Kac_3	105.4	57.113			0.36712	0.34933	151.05	3	1	Median	NaN	NaN	NaN	0	0	Median	0.94492	1.1002	NaN	1	0	Median	0.36712	0.34933	NaN	1	0	Median	0.052989	0.05511	NaN	1	1	Median	7906600	5881200	2025400	0	0	0	1822500	957660	864800	4722300	3597400	1124900	1361800	1326100	35736	20696	2120	19587	127221;127222;127223	172496;172497	172496	2220		2	
GQSEEPAGK	1	Unmodified	901.41412	0.4141249	484	O75152;A0A1B0GTU1	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	no	0	0	0	0			By MS/MS	By matching	12	0					2							1	1	4.6884	-2.5084	2	0.034925	1245	160513_QHF_FH_JSI11Kac_2	43.246	18.324			0.9354	0.96689	32.275	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2382	1.2148	NaN	1	0	Median	0.70668	0.7696	NaN	1	0	Median	2818100	1398300	1419800	0	0	0	0	0	0	1191100	458820	732230	1627000	939460	687580	20697	484	19588	127224;127225	172498	172498			1	
GQSFFIDAPDSPATLAYR	0	Unmodified	1954.9425	0.94249171	1797	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.43	0.495	4	3								2		3	2	84.812	84.199	2	6.5768E-07	76913	160511_QHF_FH_JSI11i_1	115.91	100.52			1.1674	1.1444	9.1453	7	3	Median	1.4807	1.234	17.167	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1215	1.1014	3.0725	3	2	Plateau	1.097	1.1869	10.433	2	1	Median	284790000	140180000	144610000	57870000	26422000	31448000	0	0	0	130410000	66193000	64212000	96510000	47561000	48949000	20698	1797	19589	127226;127227;127228;127229;127230;127231;127232	172499;172500;172501;172502;172503	172500			4	
GQSGELAAASGK	1	Unmodified	1074.5306	0.53055165	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.6	11.202	2	9.9589E-06	9086	160511_QHF_FH_JSI12i_1	96.64	34.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20699	5628	19590	127233	172504	172504			1	
GQSGIIYCFSQK	1	Unmodified	1386.6602	0.66018561	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.2			4				3	5	5	3	6	4	4	61.233	53.096	2;3	2.4462E-19	28721	160513_QHF_FH_JSI11Kac_6	157.68	117.33			1.08	1.0945	19.729	14	3	Median	1.0796	0.92027	6.7227	2	1	Median	0.93378	1.0887	15.717	5	1	Median	0.9179	0.91257	15.006	3	0	Median	1.191	1.2623	14.357	4	1	Median	396840000	210850000	185990000	18591000	7400400	11191000	64932000	30910000	34022000	163730000	85329000	78404000	149580000	87206000	62378000	20700	1579	19591	127234;127235;127236;127237;127238;127239;127240;127241;127242;127243;127244;127245;127246;127247;127248;127249;127250	172505;172506;172507;172508;172509;172510;172511;172512;172513;172514;172515;172516;172517;172518;172519;172520;172521;172522;172523;172524;172525;172526;172527;172528;172529;172530;172531	172511			27	
GQSIFSTIHTYGLYVNFK	1	Unmodified	2074.0524	0.052376507	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		86.182	78.314	3	7.941E-113	43200	160513_QHF_FH_JSI11Kac_6	253.48	222.95			1.2111	1.1376	15.033	3	1	Median	1.2684	1.0784	NaN	1	0	Median	1.1919	1.4311	NaN	1	1	Median	1.2111	1.1376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	388480000	164240000	224240000	94221000	41996000	52225000	152490000	57811000	94682000	141770000	64430000	77337000	0	0	0	20701	4765	19592	127251;127252;127253	172532;172533;172534	172532			3	
GQSINVHTPNSQK	1	Unmodified	1408.7059	0.70589025	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	14.301	14.374	3	0.0023774	11194	160511_QHF_FH_JSI12i_3	38.376	24.696			1.1653	1.2075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1653	1.2075	NaN	1	0	Median	39039000	19514000	19525000	0	0	0	0	0	0	0	0	0	39039000	19514000	19525000	20702	3379	19593	127254	172535	172535			1	
GQSMFPVLSGDFFTYADRDDHYWSGYFTSRPFYK	1	Unmodified	4086.8312	0.8311737	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			94.058	88.338	5	7.1077E-41	50767	160513_QHF_FH_JSI10Kac_6	137.5	128.81			0.89207	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89207	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160490000	86790000	73702000	0	0	0	160490000	86790000	73702000	0	0	0	0	0	0	20703	2755	19594	127255	172536	172536			1	
GQSPLHILGQYGK	1	Unmodified	1396.7463	0.7462985	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	53.069	52.227	2;3	2.4092E-05	44565	160511_QHF_FH_JSI12i_3	74.987	66.577			0.89778	1.024	10.938	8	0	Linear	0.95791	0.77916	10.678	2	0	Median	0.71785	0.81847	2.6251	2	0	Median	0.96703	0.88966	12.533	2	0	Median	0.96174	0.95761	7.8492	2	0	Median	888780000	444330000	444450000	106280000	50912000	55370000	158140000	96173000	61963000	199100000	93866000	105230000	425260000	203380000	221880000	20704	5222	19595	127256;127257;127258;127259;127260;127261;127262;127263	172537;172538;172539;172540;172541;172542;172543;172544;172545;172546;172547;172548;172549;172550;172551	172551			15	
GQSSLALHK	1	Unmodified	939.51378	0.51377937	994	P11234	RALB	Ras-related protein Ral-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.18	3.74			10						1	2	2	4	3	12.596	10.84	2;3	2.0079E-05	8512	160511_QHF_FH_JSI12i_3	112.75	98.075			1.1923	1.1184	14.428	6	3	Median	1.3975	1.1468	NaN	1	0	Median	0.94396	1.0907	NaN	1	0	Median	1.0786	1.039	6.4073	2	1	Median	1.3303	1.3753	11.903	2	2	Median	1220000000	525050000	694960000	35626000	12787000	22839000	70840000	37710000	33130000	286190000	114880000	171310000	827350000	359670000	467680000	20705	994	19596	127264;127265;127266;127267;127268;127269;127270;127271;127272;127273;127274	172552;172553;172554;172555;172556;172557;172558;172559;172560;172561	172560			10	
GQSSWGTGESFR	0	Unmodified	1297.5687	0.56872807	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	3	3	2	32.728	32.095	2	5.1766E-11	27110	160511_QHF_FH_JSI12i_3	150.1	146.17			1.1125	1.0277	10.488	6	0	Median	1.1334	0.95894	NaN	1	0	Median	0.78582	0.97103	NaN	1	0	Median	1.1348	1.1013	1.7591	2	0	Median	1.0186	1.0653	18.898	2	0	Median	347260000	165920000	181330000	54274000	20835000	33439000	70351000	38086000	32266000	111750000	52099000	59653000	110880000	54901000	55977000	20706	2207	19597	127275;127276;127277;127278;127279;127280;127281;127282;127283	172562;172563;172564;172565;172566;172567;172568;172569;172570;172571	172570			9	
GQTAYQR	0	Unmodified	822.39842	0.39841526	3004;2515;5260	Q5VZL5;Q5SVZ6;Q14202;Q9UBW7	ZMYM4;ZMYM1;ZMYM3;ZMYM2	Zinc finger MYM-type protein 4;Zinc finger MYM-type protein 1;Zinc finger MYM-type protein 3;Zinc finger MYM-type protein 2	no	no	0	0	0	0				By MS/MS	1	0	1												1	4.9153	4.5736	2	0.0035649	2529	160511_QHF_FH_JSI12i_1	91.626	65.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20707	3004;2515;5260	19598	127284	172572	172572			1	
GQTHTLEDFQR	0	Unmodified	1330.6266	0.6265773	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.22		8	4					2	1	2	2	6	5	23.889	22.052	2;3	5.8966E-73	18501	160511_QHF_FH_JSI11i_3	248.09	201.63			1.1013	1.1149	7.8217	14	0	Median	1.4299	1.2337	2.0525	2	0	Median	0.88581	1.1089	1.5505	2	0	Median	1.1111	1.1087	6.6033	5	0	Median	1.0293	1.081	10.493	5	0	Median	3563500000	1711000000	1852400000	429360000	180800000	248570000	424720000	210050000	214670000	1212300000	559110000	653160000	1497100000	761070000	736040000	20708	4304	19599	127285;127286;127287;127288;127289;127290;127291;127292;127293;127294;127295;127296;127297;127298;127299	172573;172574;172575;172576;172577;172578;172579;172580;172581;172582;172583;172584;172585;172586;172587;172588;172589;172590;172591;172592;172593;172594;172595;172596;172597;172598;172599	172574			27	
GQTIPEDILGK	1	Unmodified	1169.6292	0.62920306	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			58.391	57.254	2	0.00055325	51650	160511_QHF_FH_JSI10i_1	76.85	52.012			0.86306	0.7066	NaN	1	1	Median	0.86306	0.7066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105810000	53427000	52382000	105810000	53427000	52382000	0	0	0	0	0	0	0	0	0	20709	1772	19600	127300;127301	172600;172601	172600			2	
GQTLNVNR	0	Unmodified	900.47773	0.47772821	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	12.535	10.847	2	0.00064495	8863	160511_QHF_FH_JSI9i_2	101.41	67.674			0.97803	0.95354	28.769	6	3	Median	1.0212	0.86311	NaN	1	0	Median	0.6615	0.81225	NaN	1	0	Median	1.1222	1.1069	0.50447	2	1	Median	0.67704	0.74274	49.424	2	2	Median	463640000	296910000	166740000	50551000	25533000	25018000	34804000	16745000	18059000	56743000	26558000	30185000	321550000	228070000	93475000	20710	2795	19601	127302;127303;127304;127305;127306;127307	172602;172603;172604;172605;172606;172607;172608;172609	172605			8	
GQTLTLTQQQR	0	Unmodified	1272.6786	0.67861287	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.67	6.13	1						2					1	2	32.659	23.474	2	0.00064895	14766	160513_QHF_FH_JSI11Kac_4	85.355	75.922			1.1021	1.0968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1021	1.0968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3392800	1463000	1929800	0	0	0	0	0	0	3392800	1463000	1929800	0	0	0	20711	2142	19602	127308;127309;127310	172610;172611;172612;172613	172611			4	
GQTLVVQFTVK	1	Unmodified	1218.6972	0.69722304	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.48	3	4	4						5	4	5	3	4	66.43	63.496	2	1.7884E-35	33597	160513_QHF_FH_JSI9Kac_6	192.38	146.7			0.99631	0.97172	64.633	15	3	Median	0.98696	0.82373	97.443	4	1	Median	0.68973	0.81755	12.197	4	1	Median	1.1279	1.1355	0.62056	3	0	Plateau	1.0198	1.0957	80.299	4	1	Median	3527500000	2107300000	1420200000	976840000	601260000	375580000	863100000	530310000	332790000	556580000	244680000	311890000	1131000000	731020000	399970000	20712	1297	19603	127311;127312;127313;127314;127315;127316;127317;127318;127319;127320;127321;127322;127323;127324;127325;127326	172614;172615;172616;172617;172618;172619;172620;172621;172622;172623;172624;172625;172626;172627;172628;172629;172630;172631;172632;172633;172634;172635;172636;172637;172638;172639;172640;172641	172633			28	
GQTPGGAQFVGLELYK	1	Unmodified	1663.857	0.85697116	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.803	74.128	2	1.3483E-07	67453	160511_QHF_FH_JSI12i_1	138.77	100.13			0.73197	0.78432	13.597	8	1	Median	0.77582	0.65377	18.365	2	1	Median	0.66767	0.80056	9.8504	2	0	Median	0.88658	0.84985	2.7717	2	0	Median	0.73197	0.76886	9.7668	2	0	Median	364230000	206880000	157350000	62299000	37143000	25156000	108290000	64090000	44199000	106090000	56487000	49602000	87554000	49163000	38391000	20713	2453	19604	127327;127328;127329;127330;127331;127332;127333;127334	172642;172643;172644;172645;172646;172647;172648;172649;172650;172651;172652;172653;172654	172646			13	
GQTQVLCTVTFDSLESGIK	1	Unmodified	2082.0303	0.030320436	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		87.775	87.415	3	0.010436	79605	160511_QHF_FH_JSI11i_1	36.253	26.723			1.0346	1.0013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.0013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18832000	11066000	7766400	0	0	0	0	0	0	18832000	11066000	7766400	0	0	0	20714	3709	19605	127335	172655	172655			1	
GQTSTYGFLK	1	Unmodified	1100.5502	0.55022446	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.833	40.367	2	0.035585	34728	160511_QHF_FH_JSI11i_2	64.711	43.264			0.93004	0.91192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93004	0.91192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64922000	38375000	26547000	0	0	0	0	0	0	64922000	38375000	26547000	0	0	0	20715	4254	19606	127336	172656	172656			0	
GQTVNEDSMDVK	1	Unmodified	1321.582	0.58199487	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.241	21.738	2	0.0077292	19078	160511_QHF_FH_JSI12i_1	50.452	34.249			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20716	5481	19607	127337	172657	172657			1	
GQTVNEDSMDVKK	2	Unmodified	1449.677	0.67695789	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	17.439	16.981	3	0.017478	14560	160511_QHF_FH_JSI12i_1	39.005	30.408			0.70234	0.71807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70234	0.71807	NaN	1	1	Median	26088000	13908000	12180000	0	0	0	0	0	0	0	0	0	26088000	13908000	12180000	20717	5481	19608	127338	172658	172658			1	
GQTYLLPIQVNPVNDPPHIIFPHGSLMVILEHTQK	1	Unmodified	3945.0975	0.097499566	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.762	88.041	5	3.7951E-17	50544	160513_QHF_FH_JSI10Kac_6	97.077	88.387			0.5239	0.60981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5239	0.60981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87019000	44689000	42329000	0	0	0	87019000	44689000	42329000	0	0	0	0	0	0	20718	3146	19609	127339	172659;172660	172659			2	
GQVCLPVISAENWK	1	Unmodified	1599.8079	0.80791248	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	81.531	80.876	2	0.00041912	71124	160511_QHF_FH_JSI11i_2	74.237	65.283			0.22917	0.25721	105.44	2	1	Median	NaN	NaN	NaN	0	0	Median	0.10083	0.12203	NaN	1	1	Median	0.52088	0.54211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57299000	42289000	15010000	0	0	0	20717000	17603000	3113700	36582000	24686000	11896000	0	0	0	20719	2071	19610	127340;127341;127342	172661;172662;172663;172664;172665	172663			5	
GQVCLPVISAENWKPATK	2	Unmodified	1997.0404	0.040431612	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.013	74.219	3	1.4415E-07	66366	160511_QHF_FH_JSI11i_3	122.22	114.22			0.94537	1.0255	17.02	4	1	Median	1.2297	1.0294	NaN	1	1	Median	0.86719	1.0217	NaN	1	0	Median	0.77674	0.73666	NaN	1	0	Median	1.0306	1.0524	NaN	1	0	Median	546860000	323260000	223600000	15853000	7956500	7897000	77056000	47501000	29555000	203140000	127540000	75600000	250810000	140260000	110550000	20720	2071	19611	127343;127344;127345;127346	172666;172667;172668;172669;172670;172671;172672	172667			7	
GQVCVMIHSGSR	0	Oxidation (M)	1345.6231	0.6230886	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	24.45	16.328	3	0.0014439	9491	160513_QHF_FH_JSI9Kac_6	55.899	48.771			1.2166	1.2006	14.002	5	0	Median	1.3765	1.165	9.1791	2	0	Median	0.77475	0.88831	NaN	1	0	Median	1.2166	1.2273	NaN	1	0	Median	1.1474	1.2006	NaN	1	0	Median	42145000	19508000	22638000	12070000	4602600	7467800	15599000	9125900	6473300	7281000	2870300	4410700	7194900	2908800	4286100	20721	5596	19612	127347;127348;127349;127350;127351	172673;172674;172675;172676	172674		2706	4	
GQVCVMIHSGSR	0	Unmodified	1329.6282	0.62817398	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	31.598	22.852	2;3	3.0216E-17	13070	160513_QHF_FH_JSI10Kac_6	134.99	120.43			1.1088	1.0897	19.233	7	0	Median	1.1088	0.94953	NaN	1	0	Median	0.88774	1.0255	8.5884	2	0	Median	1.0812	1.0735	6.4154	2	0	Median	1.3263	1.4929	4.4917	2	0	Median	206250000	98240000	108010000	22291000	9843900	12447000	130920000	62905000	68012000	36326000	18515000	17811000	16719000	6976100	9743000	20722	5596	19612	127352;127353;127354;127355;127356;127357;127358;127359	172677;172678;172679;172680;172681;172682;172683;172684;172685;172686;172687;172688	172688			12	
GQVEVFALR	0	Unmodified	1017.5607	0.56072956	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	57.209	54.31	2	0.00030202	47827	160511_QHF_FH_JSI10i_2	83.265	59.292			0.92316	0.92747	4.5997	5	0	Median	1.1637	0.96655	5.8361	2	0	Median	0.76765	0.95107	NaN	1	0	Median	0.92316	0.9257	NaN	1	0	Median	0.81279	0.8888	NaN	1	0	Median	224980000	121120000	103860000	47010000	20633000	26377000	47957000	30043000	17914000	68216000	34710000	33506000	61798000	35739000	26059000	20723	4350	19613	127360;127361;127362;127363;127364	172689;172690;172691;172692;172693;172694;172695;172696	172695			8	
GQVEVFALRR	0	Unmodified	1173.6618	0.66184059	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	1	By matching	By MS/MS			16	0									2	1	1			50.648	41.726	3	0.001989	22993	160513_QHF_FH_JSI10Kac_6	55.401	30.546			0.96275	0.94565	12.666	2	0	Median	1.2432	1.0343	NaN	1	0	Median	0.74556	0.86464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17677000	8542100	9135200	5696000	2416100	3279900	11981000	6126000	5855300	0	0	0	0	0	0	20724	4350	19614	127365;127366	172697	172697			1	
GQVEYLLK	1	Unmodified	948.52803	0.52803245	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.79	5	3	1				1			4	2	3	1	43.99	43.104	2	0.00010933	38793	160511_QHF_FH_JSI11i_1	128.69	99.537			0.69429	0.77505	67.042	9	2	Median	0.53497	0.45014	52.432	4	2	Median	0.64461	0.77712	0.37834	2	0	Median	1.5778	1.5667	6.2099	2	0	Median	1.1772	1.215	NaN	1	0	Median	965220000	468140000	497080000	241170000	150640000	90535000	246730000	151520000	95215000	403410000	131240000	272170000	73911000	34744000	39167000	20725	1572	19615	127367;127368;127369;127370;127371;127372;127373;127374;127375;127376	172698;172699;172700;172701;172702;172703;172704;172705;172706	172698			8	
GQVFALSTHPYGCR	0	Unmodified	1591.7565	0.75654561	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			46.946	45.384	3	0.0031252	37898	160511_QHF_FH_JSI10i_3	48.527	41.488			0.73147	0.8167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73147	0.8167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20183000	10553000	9629400	0	0	0	20183000	10553000	9629400	0	0	0	0	0	0	20726	2555	19616	127377	172707	172707			1	
GQVFDQNGNPLPNVIVEVQDRK	1	Unmodified	2465.2663	0.26628546	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	81.002	80.776	3	1.243E-05	70165	160511_QHF_FH_JSI12i_3	74.062	66.81			0.82678	0.7864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82678	0.7864	NaN	1	0	Median	32397000	22901000	9496100	0	0	0	0	0	0	0	0	0	32397000	22901000	9496100	20727	1052	19617	127378	172708	172708			0	
GQVFDVGPR	0	Unmodified	973.49813	0.49812931	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.92	2	6	3				3			2	4	4	4	39.765	36.377	2	4.3664E-06	32226	160511_QHF_FH_JSI10i_2	111.95	68.139			1.1339	1.0917	17.269	11	5	Median	1.2002	0.99894	3.3796	2	1	Median	1.0572	1.2427	28.734	3	2	Median	1.1339	1.0917	12.315	3	1	Median	1.0992	1.1791	14.818	3	1	Median	688860000	348270000	340590000	112620000	53949000	58667000	123450000	71275000	52175000	240590000	113240000	127350000	212200000	109810000	102400000	20728	1309	19618	127379;127380;127381;127382;127383;127384;127385;127386;127387;127388;127389;127390;127391;127392	172709;172710;172711;172712;172713;172714;172715;172716;172717;172718;172719;172720;172721;172722;172723;172724	172722			16	
GQVGGEINVEMDAAPGVDLSR	0	Unmodified	2113.011	0.010981977	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0			By MS/MS		1	0	1											1		73.01	72.676	2	9.1799E-09	66117	160511_QHF_FH_JSI11i_1	96.993	83.314		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20729	65	19619	127393	172725	172725			1	
GQVGPGAGPLELEGVK	1	Unmodified	1506.8042	0.80420731	3041	Q6EMK4	VASN	Vasorin	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		60.897	60.26	2	2.6796E-05	53619	160511_QHF_FH_JSI9i_1	105.65	90.081			1.1926	0.89248	19.42	3	0	Plateau	0.97555	0.83167	NaN	1	0	Median	0.78417	0.89248	NaN	1	0	Median	1.2494	1.1993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82562000	40251000	42311000	28557000	13991000	14567000	21956000	12185000	9771200	32049000	14076000	17973000	0	0	0	20730	3041	19620	127394;127395;127396	172726	172726			1	
GQVINLDQLHSSWK	1	Unmodified	1623.8369	0.83690442	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.479	63.336	3	8.3952E-07	54670	160511_QHF_FH_JSI12i_3	126.48	112.45			1.1055	1.0661	4.1282	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.132	1.0354	NaN	1	0	Median	1.0797	1.0977	NaN	1	0	Median	166830000	86268000	80562000	0	0	0	0	0	0	70255000	35129000	35126000	96575000	51139000	45436000	20731	3013	19621	127397;127398	172727;172728;172729	172728			3	
GQVKNEALR	1	Unmodified	1013.5618	0.56179219	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.591	14.368	3	0.025883	11419	160511_QHF_FH_JSI11i_2	33.378	4.4216			1.0868	1.0661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0868	1.0661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146630000	69771000	76855000	0	0	0	0	0	0	146630000	69771000	76855000	0	0	0	20732	5350	19622	127399	172730	172730			1	
GQVKPSTSSQPILSAPGPTK	2	Unmodified	1979.0688	0.068754852	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	37.64	36.858	3	2.9629E-05	32239	160511_QHF_FH_JSI11i_3	67.251	63.531			0.8192	0.80917	7.6006	4	1	Median	0.99482	0.80273	NaN	1	0	Median	0.76252	0.90012	NaN	1	0	Median	0.88009	0.81567	NaN	1	0	Median	0.69659	0.74856	NaN	1	1	Median	91665000	54000000	37665000	18221000	7746700	10475000	26344000	17107000	9236300	27677000	13838000	13839000	19423000	15308000	4115000	20733	5409	19623	127400;127401;127402;127403	172731;172732;172733;172734	172731			4	
GQVLNIQMR	0	Unmodified	1057.5702	0.57024839	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.32		3	3				1	4	4	4	4	3	4	51.154	44.644	2	9.7346E-33	38066	160511_QHF_FH_JSI12i_3	211.1	186.94			1.0751	1.0704	9.2499	15	2	Median	1.4396	1.226	6.2419	4	0	Median	0.86429	1.0387	4.5318	4	0	Median	1.0995	1.0934	8.2305	3	1	Median	0.94679	0.99779	9.1541	4	1	Median	1479200000	729310000	749920000	291170000	131800000	159370000	461460000	235070000	226390000	41669000	19848000	21820000	684930000	342590000	342340000	20734	840	19624	127404;127405;127406;127407;127408;127409;127410;127411;127412;127413;127414;127415;127416;127417;127418	172735;172736;172737;172738;172739;172740;172741;172742;172743;172744;172745;172746;172747;172748;172749;172750;172751;172752;172753;172754	172753			20	
GQVLNIQMR	0	Oxidation (M)	1073.5652	0.56516301	840	P05455	SSB	Lupus La protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	14.6	0.49							4	6		2	4	1	3	37.562	27.85	2	3.9027E-05	15660	160513_QHF_FH_JSI9Kac_5	121.62	105.96			0.90016	0.97415	12.432	9	1	Median	1.1918	0.99775	27.36	2	1	Median	0.84783	1.0115	10.861	4	0	Median	0.90016	0.9039	NaN	1	0	Median	0.92559	1.0013	4.8556	2	0	Median	60207000	32912000	27295000	13430000	5949300	7481000	26901000	15323000	11577000	8165900	4204400	3961500	11710000	7434900	4275200	20735	840	19624	127419;127420;127421;127422;127423;127424;127425;127426;127427;127428	172755;172756;172757;172758;172759;172760;172761;172762;172763;172764	172755		357	9	
GQVLNSDELQELYEGLR	0	Unmodified	1961.9694	0.96943474	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	1	3	94.571	94.232	2;3	8.4888E-90	85652	160511_QHF_FH_JSI12i_1	288.77	272.15			1.115	1.2044	20.984	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1266	1.3149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85092	0.85517	22.232	3	2	Plateau	309200000	153920000	155290000	0	0	0	169810000	88847000	80962000	0	0	0	139390000	65069000	74324000	20736	165	19625	127429;127430;127431;127432;127433	172765;172766;172767;172768;172769;172770	172767			5	
GQVPMQDPR	0	Unmodified	1026.4917	0.49166372	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	19.3	18.494	2	0.00079463	15537	160511_QHF_FH_JSI9i_1	85.161	51.645			1.151	1.0614	15.747	2	2	Median	1.1495	0.94958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1525	1.1864	NaN	1	1	Median	158800000	73450000	85354000	62773000	25716000	37057000	0	0	0	0	0	0	96031000	47735000	48297000	20737	1401	19626	127434;127435;127436	172771;172772;172773	172773			3	
GQVPPLVTTNFLVK	1	Unmodified	1511.8712	0.87116466	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								4	4	4	4	86.791	86.258	2;3	0.00052146	76592	160511_QHF_FH_JSI10i_2	57.136	50.407			1.0076	1.0389	18.118	15	5	Median	1.3742	1.1725	20.602	4	2	Median	0.83468	0.98392	16.729	4	0	Linear	0.96982	0.93947	10.058	4	1	Median	1.2385	1.2287	13.896	3	2	Median	362080000	179580000	182500000	76528000	35284000	41245000	119720000	63102000	56613000	117790000	59337000	58456000	48045000	21860000	26185000	20738	1814	19627	127437;127438;127439;127440;127441;127442;127443;127444;127445;127446;127447;127448;127449;127450;127451;127452	172774;172775;172776;172777;172778;172779;172780;172781;172782;172783;172784;172785;172786;172787;172788;172789;172790;172791;172792;172793;172794	172793			18	
GQVQEVGWHDVAGWLGR	0	Unmodified	1892.9282	0.92817905	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	4.81		3	8						2	3	5	3	2	81.148	78.658	2;3	1.9877E-16	69253	160511_QHF_FH_JSI12i_3	164.53	153.47			1.0135	1.1631	25.302	10	2	Median	1.6668	1.3971	28.609	2	1	Median	1.0054	1.1854	10.355	3	1	Median	1.0148	0.93995	36.008	3	0	Plateau	1.1104	1.1622	39.173	2	0	Median	661240000	337820000	323410000	64619000	26298000	38321000	159600000	82265000	77334000	272580000	143610000	128970000	164430000	85646000	78788000	20739	1129	19628	127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465	172795;172796;172797;172798;172799;172800;172801;172802;172803;172804;172805;172806;172807;172808;172809;172810;172811;172812;172813	172812			19	
GQVSEGGQLR	0	Unmodified	1029.5203	0.52032131	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.75	6.26	1	1					2				1	2	1	13.114	9.1571	2	2.076E-06	8155	160511_QHF_FH_JSI11i_1	114.19	77.485			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20740	4164	19629	127466;127467;127468;127469	172814;172815;172816;172817	172814			4	
GQVSESEDSITK	1	Unmodified	1278.5939	0.59393976	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		17.603	16.994	2	0.00024538	14375	160511_QHF_FH_JSI11i_1	92.866	76.985			1.2959	1.1496	41.213	2	2	Median	1.0217	0.85896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6435	1.5385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131360000	63029000	68335000	64152000	32048000	32104000	0	0	0	67212000	30981000	36231000	0	0	0	20741	662	19630	127470;127471	172818;172819	172818			2	
GQVSQETLSEEASSQATLPNQPVEK	1	Unmodified	2656.2828	0.28278297	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	56.515	55.855	3	4.0894E-11	50758	160511_QHF_FH_JSI12i_1	88.329	84.914			1.091	1.1506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.091	1.1506	NaN	1	0	Median	37770000	18607000	19163000	0	0	0	0	0	0	0	0	0	37770000	18607000	19163000	20742	5034	19631	127472;127473	172820;172821;172822	172821			3	
GQVTFLSIHPSGK	1	Unmodified	1369.7354	0.73539946	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	3	2	5	3	57.275	50.585	2;3	7.3973E-15	26482	160513_QHF_FH_JSI12Kac_6	117.48	97.016			0.86781	0.84777	17.391	12	7	Median	1.0704	0.90275	20.218	3	3	Plateau	0.49551	0.58352	NaN	1	0	Median	0.8844	0.83831	5.1997	5	4	Median	0.85014	0.85968	3.8963	3	0	Median	2082000000	1056600000	1025400000	619450000	287870000	331580000	56599000	38327000	18272000	1102400000	566540000	535860000	303570000	163910000	139660000	20743	5070	19632	127474;127475;127476;127477;127478;127479;127480;127481;127482;127483;127484;127485;127486	172823;172824;172825;172826;172827;172828;172829;172830;172831;172832;172833;172834;172835;172836;172837	172835			13	
GQVTGALLLSVVGGK	1	Unmodified	1397.8242	0.82421447	4070	Q96FC9	DDX11	Probable ATP-dependent RNA helicase DDX11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	88.413	87.815	2	3.8329E-10	71913	160511_QHF_FH_JSI9i_3	151.78	131.48			0.89741	0.89258	11.213	4	0	Median	1.1874	0.99323	NaN	1	0	Median	0.71527	0.82073	NaN	1	0	Median	0.85401	0.79917	NaN	1	0	Median	0.94302	0.97072	NaN	1	0	Median	55993000	28418000	27575000	14433000	6535300	7898100	12112000	6231700	5880300	12514000	6812800	5701300	16933000	8837900	8095300	20744	4070	19633	127487;127488;127489;127490	172838;172839;172840;172841;172842	172842			4	
GQVTLYEHNNELVTGSSYESPPPDFR	0	Unmodified	2935.3624	0.36243027	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.912	65.618	3	2.5522E-09	56706	160511_QHF_FH_JSI12i_3	70.533	67.92			0.73089	0.78507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73089	0.78507	NaN	1	1	Median	20211000	14317000	5894800	0	0	0	0	0	0	0	0	0	20211000	14317000	5894800	20745	4956	19634	127491	172843	172843			1	
GQVVENNSVTEFSEEK	1	Unmodified	1794.8272	0.82718718	4483	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.887	42.233	2	1.6472E-19	38070	160511_QHF_FH_JSI11i_1	216.34	183.25			0.57147	0.56819	24.26	4	4	Median	0.86835	0.71033	NaN	1	1	Median	0.38963	0.44131	NaN	1	1	Median	0.72027	0.67861	NaN	1	1	Median	0.45341	0.47574	NaN	1	1	Median	82688000	55894000	26794000	15251000	8057600	7193300	22779000	16576000	6203100	23924000	16147000	7776900	20734000	15113000	5620900	20746	4483	19635	127492;127493;127494;127495	172844;172845;172846;172847	172844			4	
GQVVSLIR	0	Unmodified	870.5287	0.52870115	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.6	4.8			1					4		1	2	1	1	47.646	39.03	2	0.014866	32462	160511_QHF_FH_JSI10i_3	60.436	37.417			0.85692	0.89787	7.4828	5	1	Median	1.1052	0.89787	NaN	1	0	Median	0.74889	0.87461	1.2625	2	1	Median	1.049	1.0455	NaN	1	0	Median	0.85692	0.93378	NaN	1	0	Median	86649000	47800000	38849000	5421500	2624400	2797100	70016000	39920000	30096000	8733000	3877300	4855700	2478500	1378100	1100500	20747	871	19636	127496;127497;127498;127499;127500	172848;172849;172850	172848			3	
GQVVTKTALLK	2	Acetyl (K)	1198.7285	0.72852317	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		64.33	53.266	2	0.031143	30011	160513_QHF_FH_JSI11Kac_4	53.683	26.568			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	972170	972170	0	0	0	0	0	0	0	972170	972170	0	0	0	0	20748	2947	19637	127501	172851	172851			1	
GQVVTVHLQTSLENGTR	0	Unmodified	1837.9646	0.96462413	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		58.066	48.629	3	9.1222E-07	26352	160513_QHF_FH_JSI11Kac_6	104.44	83.787			1.7926	1.6624	6.8126	2	1	Median	2.0524	1.7444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5657	1.5842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15749000	4726400	11023000	8315800	2558200	5757600	0	0	0	7433700	2168300	5265400	0	0	0	20749	2528	19638	127502;127503	172852;172853;172854	172852			3	
GQVWINGFNLGR	0	Unmodified	1359.7048	0.70476804	1094	P16278;Q6UWU2	GLB1;GLB1L	Beta-galactosidase;Beta-galactosidase-1-like protein	yes	no	0	0	0	0			By MS/MS		16	0									1			1		79.921	70.607	2	0.0034693	38745	160513_QHF_FH_JSI11Kac_6	85.731	66.416			0.44471	0.4248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44471	0.4248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18392000	13250000	5143000	0	0	0	0	0	0	18392000	13250000	5143000	0	0	0	20750	1094	19639	127504	172855	172855			1	
GQVYILGR	0	Unmodified	904.51305	0.51305109	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.93	6.29	4	4	4		1	3	3	4	4	5	8	7	7	44.826	38.98	2	3.6933E-43	22389	160513_QHF_FH_JSI12Kac_4	208.61	155.92			0.96513	1.0017	13.183	25	0	Median	1.3703	1.2118	8.774	4	0	Linear	0.94624	1.0097	11.415	7	0	Median	0.99003	0.9905	11.772	7	0	Median	0.8659	0.95027	7.449	7	0	Median	25934000000	12644000000	13290000000	3815400000	1567000000	2248400000	6551000000	3377200000	3173800000	9568700000	4729200000	4839500000	5998800000	2970900000	3027900000	20751	779	19640	127505;127506;127507;127508;127509;127510;127511;127512;127513;127514;127515;127516;127517;127518;127519;127520;127521;127522;127523;127524;127525;127526;127527;127528;127529;127530;127531	172856;172857;172858;172859;172860;172861;172862;172863;172864;172865;172866;172867;172868;172869;172870;172871;172872;172873;172874;172875;172876;172877;172878;172879;172880;172881;172882;172883;172884;172885;172886;172887;172888;172889;172890;172891;172892;172893;172894;172895;172896;172897;172898;172899;172900;172901;172902;172903;172904;172905;172906;172907;172908;172909;172910;172911;172912;172913;172914;172915	172893			60	
GQWINLPVLQLTK	1	Unmodified	1508.8715	0.87149901	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	101.34	101.24	2	1.516E-22	90336	160511_QHF_FH_JSI11i_3	208.46	185.14			1.1818	1.1136	10.2	5	2	Median	1.3303	1.0842	NaN	1	0	Median	1.0845	1.2166	12.516	2	2	Median	1.2264	1.1346	NaN	1	0	Median	1.0229	1.0069	NaN	1	0	Median	877520000	428890000	448620000	43115000	22153000	20962000	266320000	126750000	139570000	220940000	98183000	122760000	347140000	181810000	165330000	20752	4956	19641	127532;127533;127534;127535;127536	172916;172917;172918;172919;172920;172921	172916			6	
GQYFGELALVTNKPR	1	Unmodified	1691.8995	0.89950468	1043	P13861;P31323	PRKAR2A;PRKAR2B	cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		66.017	65.023	3	3.3031E-10	53355	160511_QHF_FH_JSI9i_3	148.03	125.22			0.90539	1.0201	10.483	3	0	Plateau	1.2956	1.0361	NaN	1	0	Median	0.78635	0.88052	NaN	1	0	Median	0.90539	0.85176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	405660000	220200000	185450000	150070000	68053000	82015000	133620000	86657000	46968000	121960000	65495000	56470000	0	0	0	20753	1043	19642	127537;127538;127539	172922;172923;172924;172925	172925			4	
GQYHTLQAGFSSR	0	Unmodified	1450.6953	0.69532556	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	3	1	1	32.225	26.516	2;3	5.5788E-13	15038	160513_QHF_FH_JSI10Kac_6	126.09	112.06			1.1909	1.1375	12.62	6	0	Median	1.2184	1.004	8.243	2	0	Median	0.96837	1.1375	0.54275	2	0	Median	1.2558	1.231	NaN	1	0	Median	1.2222	1.3731	NaN	1	0	Median	99562000	55813000	43749000	25459000	13430000	12029000	66136000	38541000	27595000	5070000	2517400	2552600	2896500	1324200	1572300	20754	5608	19643	127540;127541;127542;127543;127544;127545;127546	172926;172927;172928;172929;172930;172931;172932;172933;172934;172935;172936	172936			11	
GQYISPFHDIPIYADK	1	Unmodified	1862.9203	0.9202997	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.78	1	8	9						3	6	4	6	5	77.032	74.967	2;3	1.6505E-40	65919	160511_QHF_FH_JSI12i_2	190.82	181.06			0.97384	0.98159	16.942	19	1	Median	1.0669	0.89368	16.766	5	1	Median	0.76555	0.99016	4.8979	3	0	Plateau	0.95864	0.96713	17.605	6	0	Median	0.94853	1.0505	16.645	5	0	Median	6796500000	3331500000	3465000000	925470000	466480000	458990000	1209500000	736110000	473420000	2501900000	1128800000	1373100000	2159600000	1000200000	1159500000	20755	2641	19644	127547;127548;127549;127550;127551;127552;127553;127554;127555;127556;127557;127558;127559;127560;127561;127562;127563;127564;127565;127566;127567	172937;172938;172939;172940;172941;172942;172943;172944;172945;172946;172947;172948;172949;172950;172951;172952;172953;172954;172955;172956;172957;172958;172959;172960;172961;172962;172963;172964;172965;172966;172967;172968;172969;172970;172971;172972;172973;172974;172975;172976;172977;172978;172979;172980;172981;172982;172983;172984;172985;172986;172987;172988;172989;172990;172991;172992;172993;172994	172951			58	
GQYNTYPIK	1	Unmodified	1082.5397	0.53965977	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	31.386	26.993	2	7.0581E-06	23821	160511_QHF_FH_JSI10i_1	131.22	93.664			1.0044	1.0751	16.923	7	1	Median	1.3633	1.1124	NaN	1	0	Median	0.72146	0.83832	20.961	2	1	Median	1.0167	0.99049	13.706	2	0	Median	1.0709	1.131	7.1629	2	0	Median	908390000	460100000	448290000	126130000	73713000	52412000	355270000	188230000	167050000	273790000	136790000	137000000	153190000	61362000	91831000	20756	1960	19645	127568;127569;127570;127571;127572;127573;127574	172995;172996;172997;172998;172999;173000;173001	172997			6	
GQYQGLSQDPNSLSNLDQDLPNNMIHQVPIK	1	Unmodified	3462.6838	0.68378118	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							1	2	4	3	91.535	91.119	3;4	8.5571E-23	83013	160511_QHF_FH_JSI11i_1	106.51	100.67			1.0477	0.99853	27.712	10	3	Median	1.057	0.93426	NaN	1	0	Median	0.75509	0.90653	10.105	2	0	Median	1.1362	1.1066	32.57	4	2	Median	0.93476	0.96344	29.957	3	1	Median	309240000	130800000	178440000	32911000	14701000	18210000	70652000	36105000	34547000	122090000	41754000	80336000	83590000	38240000	45350000	20757	5135	19646	127575;127576;127577;127578;127579;127580;127581;127582;127583;127584	173002;173003;173004;173005;173006;173007;173008;173009;173010;173011;173012;173013;173014;173015;173016;173017;173018;173019;173020;173021;173022;173023;173024;173025	173005			24	
GQYTHKIYHLK	2	Acetyl (K)	1428.7514	0.75138388	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.015	30.471	3	0.027021	16825	160513_QHF_FH_JSI11Kac_6	38.634	25.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20758	1636	19647	127585	173026	173026			1	
GQYTSGK	1	Unmodified	739.35007	0.35006808	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	1	3	0.38538	0.11593	2	0.0087617	212	160511_QHF_FH_JSI12i_1	85.265	38.894			0.74369	0.79887	60.215	5	4	Median	NaN	NaN	NaN	0	0	Median	1.0161	1.2034	NaN	1	0	Median	0.40829	0.39418	NaN	1	1	Median	0.74369	0.79887	64.322	3	3	Median	196710000	114830000	81875000	0	0	0	62314000	29790000	32524000	28867000	21832000	7035100	105530000	63209000	42316000	20759	1409	19648	127586;127587;127588;127589;127590	173027;173028;173029;173030;173031	173029			5	
GRADTGLETSTR	0	Unmodified	1262.6215	0.62149192	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			9.3003	8.7121	2	0.051091	6544	160511_QHF_FH_JSI10i_3	51.092	39.941			0.84951	0.94144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84951	0.94144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20642000	11071000	9571100	0	0	0	20642000	11071000	9571100	0	0	0	0	0	0	20760	1695	19649	127591	173032	173032			1	
GRDAFPVAGQK	1	Unmodified	1144.5989	0.59890598	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		18.599	17.822	2;3	0.00044286	14492	160511_QHF_FH_JSI10i_3	93.058	63.971			1.05	1.009	29.085	6	1	Median	1.2472	1.009	2.8839	2	1	Median	0.88124	1.01	5.0411	2	0	Median	0.91233	0.83285	60.85	2	0	Median	NaN	NaN	NaN	0	0	Median	563490000	276150000	287330000	302340000	134550000	167800000	148580000	79364000	69217000	112560000	62244000	50318000	0	0	0	20761	1830	19650	127592;127593;127594;127595;127596;127597;127598	173033;173034;173035;173036;173037;173038	173035			6	
GRDEPNMNPK	1	Unmodified	1156.5295	0.52950579	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		7.964	7.964	2	0.0067114	5881	160511_QHF_FH_JSI10i_2	77.662	61.46			1.119	1.0697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.119	1.0697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54344000	30498000	23846000	0	0	0	0	0	0	54344000	30498000	23846000	0	0	0	20762	5161	19651	127599;127600	173039;173040	173040			2	
GRDIVVLGVEK	1	Unmodified	1183.6925	0.69247202	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.09			5					4	4	4	4	3	2	48.734	41.591	2;3	2.6528E-22	33914	160511_QHF_FH_JSI9i_3	174.42	109.77			0.94082	0.9647	15.086	12	0	Median	1.1545	0.93064	15.404	4	0	Median	0.82974	0.95504	10.052	4	0	Median	0.91901	0.89287	24.751	2	0	Median	1.0452	1.1251	13.704	2	0	Median	1737400000	945850000	791580000	585390000	297750000	287650000	1111400000	628870000	482510000	24641000	11304000	13337000	16004000	7927100	8076400	20763	209	19652	127601;127602;127603;127604;127605;127606;127607;127608;127609;127610;127611;127612;127613	173041;173042;173043;173044;173045;173046;173047;173048;173049;173050;173051;173052;173053;173054;173055;173056;173057;173058;173059;173060;173061;173062;173063;173064;173065;173066;173067	173057			27	
GRDPALPTLLNPK	1	Unmodified	1390.7932	0.79324869	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			55.97	54.413	3	0.00038356	44658	160511_QHF_FH_JSI9i_3	66.989	60.955			0.85789	0.82807	3.2831	2	0	Median	1.0267	0.84752	NaN	1	0	Median	0.71683	0.80907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76905000	30418000	46487000	45431000	17853000	27579000	31473000	12565000	18908000	0	0	0	0	0	0	20764	2466	19653	127614;127615	173068	173068			1	
GRDPVEILIPK	1	Unmodified	1235.7238	0.72377215	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	3	1	58.89	58.198	3	5.5963E-05	50151	160511_QHF_FH_JSI12i_3	84.289	68.917			0.79	0.84879	33.729	8	6	Median	0.95659	0.85624	NaN	1	1	Median	0.72348	0.87806	57.467	3	3	Median	0.76509	0.79871	19.712	3	2	Median	0.81571	0.8414	NaN	1	0	Median	525050000	300740000	224320000	36430000	18300000	18130000	150270000	93668000	56601000	156160000	84079000	72083000	182190000	104690000	77504000	20765	3223	19654	127616;127617;127618;127619;127620;127621;127622;127623;127624	173069;173070;173071;173072;173073;173074;173075;173076;173077;173078;173079;173080;173081	173080			13	
GRDPVNPEK	1	Unmodified	1010.5145	0.51450765	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	3	1	6.7009	6.6162	2;3	0.0017231	4326	160511_QHF_FH_JSI11i_3	49.189	37.821			1.0769	1.0386	15.964	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2517	1.4457	NaN	1	0	Median	1.0769	0.99669	8.9747	3	2	Median	1.0297	1.0386	NaN	1	0	Median	789810000	408930000	380880000	0	0	0	125090000	70172000	54920000	514740000	257030000	257710000	149970000	81726000	68248000	20766	430	19655	127625;127626;127627;127628;127629	173082;173083;173084;173085;173086	173082			5	
GRDVIAQSQSGTGK	1	Unmodified	1402.7165	0.71645494	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.4	1	6	9					4	6	8	7	6	5	11.105	7.924	2;3	3.9927E-05	7346	160511_QHF_FH_JSI10i_2	95.854	85.376			0.89538	0.87867	27.303	21	5	Median	1.2507	1.0572	37.762	8	3	Median	0.7754	0.95678	19.94	5	2	Median	0.87827	0.8505	10.282	6	0	Median	0.64878	0.68722	1.5816	2	0	Median	4312300000	2035600000	2276700000	2409700000	1084000000	1325700000	1324200000	652280000	671960000	523270000	269430000	253840000	55141000	29861000	25280000	20767	1481	19656	127630;127631;127632;127633;127634;127635;127636;127637;127638;127639;127640;127641;127642;127643;127644;127645;127646;127647;127648;127649;127650;127651;127652;127653;127654;127655	173087;173088;173089;173090;173091;173092;173093;173094;173095;173096;173097;173098;173099;173100;173101;173102;173103;173104;173105;173106;173107;173108;173109;173110;173111;173112;173113;173114;173115;173116;173117;173118	173109			32	
GREDESYNISEVMSK	1	Unmodified	1742.7781	0.77812849	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	46.428	46.187	3	0.0036058	39462	160511_QHF_FH_JSI12i_3	46.319	35.374			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20768	4976	19657	127656	173119	173119			1	
GREEINFVEIK	1	Unmodified	1332.7038	0.70376498	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.597	48.597	3	0.00050068	42967	160511_QHF_FH_JSI11i_3	56.122	38.755			0.61886	0.5877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61886	0.5877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107460000	68833000	38622000	0	0	0	0	0	0	107460000	68833000	38622000	0	0	0	20769	3875	19658	127657	173120;173121	173120			2	
GREEWESAALQNANTK	1	Unmodified	1802.8547	0.85473933	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1		By MS/MS			2.67	0.471		1	2								3			38.385	37.081	3	0.00049714	32685	160511_QHF_FH_JSI10i_2	70.167	54.774			1.1471	1.7046	29.833	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.1471	1.7046	29.833	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81785000	32359000	49426000	0	0	0	81785000	32359000	49426000	0	0	0	0	0	0	20770	2947	19659	127658;127659;127660	173122;173123;173124	173124			2	
GREEYEGPNK	1	Unmodified	1177.5364	0.53636531	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	7.0467	6.848	2;3	4.068E-13	4989	160511_QHF_FH_JSI10i_2	157.24	116.89			1.1937	1.2087	22.145	9	3	Median	1.417	1.217	3.7806	2	2	Median	1.0218	1.2679	6.7614	2	1	Median	1.3111	1.2543	9.6307	3	0	Median	0.75366	0.77192	8.5943	2	0	Median	1440300000	657810000	782540000	334920000	141200000	193730000	314640000	168490000	146150000	665120000	277010000	388110000	125660000	71115000	54548000	20771	1222	19660	127661;127662;127663;127664;127665;127666;127667;127668;127669	173125;173126;173127;173128;173129;173130;173131;173132;173133;173134;173135	173133			11	
GREEYEGPNKK	2	Acetyl (K)	1347.6419	0.64189301	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	1	0	0	2			By MS/MS	By MS/MS	15	0								3				2	1	16.345	7.0109	3	0.033132	6057	160513_QHF_FH_JSI12Kac_5	44.299	36.195			1.1977	1.2688	15.743	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4223	1.4182	NaN	1	0	Median	1.0086	1.1351	NaN	1	0	Median	8346100	3683600	4662400	0	0	0	0	0	0	3913800	1825000	2088800	4432300	1858600	2573600	20772	1222	19661	127670;127671;127672	173136;173137	173137			2	
GREFSFEAWNAK	1	Unmodified	1440.6786	0.67861287	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			55.917	54.358	2;3	7.2865E-05	44605	160511_QHF_FH_JSI9i_3	66.393	61.005			1.1294	0.90921	15.184	3	0	Plateau	1.0912	0.88331	4.0872	2	0	Median	1.0165	1.1435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104810000	53275000	51535000	84799000	44152000	40647000	20011000	9123300	10888000	0	0	0	0	0	0	20773	2087	19662	127673;127674;127675	173138;173139	173138			2	
GREGPVQFEEDPFGLDK	1	Unmodified	1918.9061	0.9061062	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	69.142	68.844	3	0.0023157	61308	160511_QHF_FH_JSI10i_2	49.865	40.459			0.35776	0.37078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35776	0.37078	NaN	1	1	Median	24515000	15283000	9232400	0	0	0	0	0	0	0	0	0	24515000	15283000	9232400	20774	2443	19663	127676;127677	173140;173141	173140			2	
GRELTGLK	1	Unmodified	872.50797	0.50796571	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		12.708	12.156	3	0.005503	9466	160511_QHF_FH_JSI11i_3	47.603	28.827			1.1997	0.95831	21.527	3	0	Median	1.1997	0.95831	NaN	1	0	Median	0.81151	0.91827	NaN	1	0	Median	1.4398	1.3595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	582130000	273290000	308850000	244890000	117850000	127040000	144830000	84079000	60749000	192410000	71357000	121060000	0	0	0	20775	1180	19664	127678;127679;127680	173142;173143	173142			2	
GRESVLIISTDPAHNISDAFDQK	1	Unmodified	2512.2558	0.25578035	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			77.019	75.603	3	6.9987E-05	63435	160511_QHF_FH_JSI10i_3	51.234	43.522			0.77231	0.90989	10.733	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77231	0.90989	10.733	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35749000	18075000	17674000	0	0	0	35749000	18075000	17674000	0	0	0	0	0	0	20776	357	19665	127681;127682	173144;173145	173145			2	
GRESYIETELIFALAK	1	Unmodified	1838.9778	0.97781458	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								2	2		92.276	91.808	2;3	0.00011581	81432	160511_QHF_FH_JSI10i_2	72.175	1.6462			1.2676	1.2763	32.196	3	1	Median	NaN	NaN	NaN	0	0	Median	0.91137	1.0836	43.526	2	1	Median	1.3638	1.2763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157770000	74180000	83588000	0	0	0	47288000	29587000	17701000	110480000	44592000	65887000	0	0	0	20777	1807	19666	127683;127684;127685;127686	173146;173147;173148;173149	173149			4	
GRFPESSAVQSSSFER	0	Unmodified	1769.8333	0.83327561	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				38.221	36.748	3	0.01367	29998	160511_QHF_FH_JSI9i_3	34.928	25.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20778	5066	19667	127687	173150	173150			1	
GRGDASGLK	1	Unmodified	859.45118	0.45117911	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	3	1		4.9028	4.5339	2;3	1.9419E-06	2472	160511_QHF_FH_JSI10i_3	119.75	60.932			0.84608	0.75696	5.1989	4	0	Median	0.9339	0.75696	0.38108	2	0	Median	0.71575	0.82412	NaN	1	0	Median	0.77132	0.72891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1857600000	1004200000	853380000	1042000000	543820000	498140000	558420000	317260000	241160000	257170000	143090000	114080000	0	0	0	20779	611	19668	127688;127689;127690;127691;127692;127693	173151;173152;173153;173154;173155;173156;173157;173158	173155			8	
GRGFGSEEGSR	0	Unmodified	1137.5163	0.51629857	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			6.6016	6.092	3	0.035497	4048	160511_QHF_FH_JSI9i_3	43.502	39.915			1.1209	1.0861	3.1218	2	0	Median	1.2829	1.0624	NaN	1	0	Median	0.97933	1.1103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69001000	33962000	35039000	45676000	20753000	24923000	23325000	13209000	10116000	0	0	0	0	0	0	20780	5678	19669	127694;127695	173159	173159			0	
GRGITGVEDK	1	Unmodified	1030.5407	0.5407224	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	4	5	3	4	11.223	9.5986	2;3	3.1203E-05	7625	160511_QHF_FH_JSI11i_3	77.062	52.973			1.1059	1.0978	40.44	16	4	Median	1.7036	1.3565	10.922	4	0	Median	0.87683	1.0444	48.784	5	2	Median	1.068	1.0035	8.3384	3	0	Median	1.4392	1.4975	62.863	4	2	Median	7391700000	3122200000	4269500000	2745800000	942750000	1803100000	2622600000	1280500000	1342100000	1778400000	766810000	1011600000	244830000	132150000	112680000	20781	1322	19670	127696;127697;127698;127699;127700;127701;127702;127703;127704;127705;127706;127707;127708;127709;127710;127711	173160;173161;173162;173163;173164;173165;173166;173167;173168;173169;173170;173171;173172;173173;173174;173175;173176;173177;173178;173179;173180;173181	173160			22	
GRGPSPEGSSSTESSPEHPPK	1	Unmodified	2105.9614	0.96138925	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			3							3				11.248	10.537	3;4	2.1552E-09	8020	160511_QHF_FH_JSI9i_3	103.27	94.451			1.2695	1.0351	7.6005	2	0	Median	1.2695	1.0351	7.6005	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124660000	58820000	65836000	124660000	58820000	65836000	0	0	0	0	0	0	0	0	0	20782	5474	19671	127712;127713;127714	173182;173183;173184;173185	173184			4	
GRGVTFLFPIQAK	1	Unmodified	1432.8191	0.81906951	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			77.13	69.696	3	0.0005746	38422	160513_QHF_FH_JSI10Kac_6	57.106	44.746			0.97123	0.98413	9.4677	2	0	Median	1.2301	1.0523	NaN	1	0	Median	0.76686	0.92041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144860000	73629000	71228000	51205000	22574000	28631000	93652000	51055000	42596000	0	0	0	0	0	0	20783	4940	19672	127715;127716	173186;173187;173188;173189	173189			4	
GRLDNGQVGLYPANYVEAIQ	0	Unmodified	2176.0913	0.091281208	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	82.125	81.585	2	3.4432E-05	70780	160511_QHF_FH_JSI12i_3	88.768	77.509			0.88765	1.0734	13.382	7	0	Median	1.4788	1.2554	NaN	1	0	Median	0.88381	1.0581	2.0346	2	0	Median	0.997	0.97156	16.451	2	0	Median	0.95616	1.0014	17.843	2	0	Median	220920000	111490000	109430000	39378000	14224000	25154000	63506000	38017000	25490000	52268000	25755000	26512000	65768000	33489000	32279000	20784	5435	19673	127717;127718;127719;127720;127721;127722;127723	173190;173191;173192;173193;173194;173195;173196;173197;173198;173199;173200;173201	173201			12	
GRLDYLSSLK	1	Unmodified	1150.6346	0.63462279	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			12						4	6	4	3	3	50.992	47.836	2;3	4.0232E-19	42078	160511_QHF_FH_JSI11i_3	182.64	135.04			0.92046	0.91705	36.146	16	3	Median	1.1183	0.95151	60.417	6	2	Median	0.92046	1.0192	7.7776	4	1	Median	0.97826	0.93765	7.7372	3	0	Plateau	0.78669	0.82019	3.8058	3	0	Median	36988000000	18636000000	18352000000	15595000000	7886100000	7709100000	7391300000	4085200000	3306100000	10285000000	4674500000	5610200000	3716900000	1990200000	1726700000	20785	895	19674	127724;127725;127726;127727;127728;127729;127730;127731;127732;127733;127734;127735;127736;127737;127738;127739	173202;173203;173204;173205;173206;173207;173208;173209;173210;173211;173212;173213;173214;173215;173216;173217;173218;173219;173220;173221;173222;173223;173224;173225;173226;173227;173228;173229;173230;173231;173232;173233;173234;173235;173236;173237;173238;173239;173240;173241;173242;173243;173244;173245;173246;173247;173248	173205			47	
GRLEEAYEK	1	Unmodified	1093.5404	0.54038805	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		13.017	13.017	2	0.0054733	10485	160511_QHF_FH_JSI11i_3	73.887	31.696			1.0469	0.97288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0469	0.97288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89450000	45763000	43687000	0	0	0	0	0	0	89450000	45763000	43687000	0	0	0	20786	3962	19675	127740	173249	173249			1	
GRLIIEFK	1	Unmodified	974.5913	0.59130141	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.049	48.445	3	0.039997	39718	160511_QHF_FH_JSI9i_3	34.387	10.232			0.59795	0.49899	NaN	1	1	Median	0.59795	0.49899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13701000	7607600	6093700	13701000	7607600	6093700	0	0	0	0	0	0	0	0	0	20787	1376	19676	127741	173250	173250			1	
GRLPQLGEK	1	Unmodified	996.57163	0.5716286	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.23	21.933	3	0.029505	17659	160511_QHF_FH_JSI9i_3	36.395	28.263			0.74555	0.60576	NaN	1	1	Median	0.74555	0.60576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56898000	30099000	26799000	56898000	30099000	26799000	0	0	0	0	0	0	0	0	0	20788	3499	19677	127742	173251	173251			1	
GRLSKEDIER	1	Acetyl (K)	1243.6521	0.65206377	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	33.085	24.221	3	0.00029433	13768	160513_QHF_FH_JSI10Kac_6	91.937	22.927			0.65702	0.70838	55.512	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0023	1.1618	NaN	1	0	Median	0.39284	0.38359	NaN	1	0	Median	0.65702	0.70838	NaN	1	0	Median	34435000	20007000	14428000	0	0	0	13877000	6902600	6974100	14068000	9941200	4127200	6490200	3163000	3327100	20789	985	19678	127743;127744;127745	173252;173253;173254;173255	173255	778		4	
GRLTPSDMPLLELK	1	Unmodified	1568.8596	0.8596137	4660	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				76.948	75.51	3	0.019146	62174	160511_QHF_FH_JSI9i_3	38.028	33.227			1.1218	0.96183	NaN	1	0	Median	1.1218	0.96183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9410400	3684100	5726300	9410400	3684100	5726300	0	0	0	0	0	0	0	0	0	20790	4660	19679	127746	173256	173256			1	
GRMEYLVK	1	Unmodified	994.52699	0.52698659	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			25.489	24.182	3	0.0060952	19504	160511_QHF_FH_JSI9i_3	51.415	27.26			1.3946	1.3461	17.045	2	0	Median	1.8962	1.5185	NaN	1	0	Median	1.0257	1.1932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99337000	41479000	57858000	54160000	20652000	33508000	45176000	20827000	24350000	0	0	0	0	0	0	20791	4851	19680	127747;127748	173257;173258;173259;173260	173259			4	
GRNDLMEYAK	1	Oxidation (M)	1211.5605	0.56047157	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.41		4	19					3	4	7	7	7	9	22.715	20.413	2;3	1.6824E-06	24379	160511_QHF_FH_JSI11i_3	121.9	98.47			0.90441	1.0053	61.532	27	1	Median	1.289	1.0756	49.118	6	0	Median	0.94591	1.1211	103.66	6	0	Median	0.82364	0.78391	52.872	7	0	Median	0.82305	0.89644	27.353	8	1	Median	5377000000	2926900000	2450000000	696910000	284330000	412570000	1259000000	619070000	639880000	2141100000	1298900000	842190000	1280000000	724650000	555390000	20792	779	19681	127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759;127760;127761;127762;127763;127764;127765;127766;127767;127768;127769;127770;127771;127772;127773;127774;127775;127776;127777;127778	173261;173262;173263;173264;173265;173266;173267;173268;173269;173270;173271;173272;173273;173274;173275;173276;173277;173278;173279;173280;173281;173282;173283;173284;173285;173286;173287;173288;173289;173290	173267		295	28	
GRNDLMEYAK	1	Unmodified	1195.5656	0.56555694	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.94		6	12					4	4	6	9	7	4	32.091	28.5	2;3	1.5392E-24	24757	160511_QHF_FH_JSI9i_2	185.08	172.86			1.0765	1.0607	37.366	25	5	Median	1.3236	1.102	22.895	6	1	Median	0.90866	1.077	52.604	9	4	Median	1.0056	0.97951	32.603	6	0	Median	0.90219	0.93047	17.202	4	0	Median	27169000000	13600000000	13569000000	3769800000	1434900000	2334900000	8541000000	4905400000	3635600000	10112000000	4688200000	5424200000	4746100000	2571500000	2174600000	20793	779	19681	127779;127780;127781;127782;127783;127784;127785;127786;127787;127788;127789;127790;127791;127792;127793;127794;127795;127796;127797;127798;127799;127800;127801;127802;127803;127804	173291;173292;173293;173294;173295;173296;173297;173298;173299;173300;173301;173302;173303;173304;173305;173306;173307;173308;173309;173310;173311;173312;173313;173314;173315;173316;173317;173318;173319;173320;173321;173322;173323;173324;173325;173326;173327;173328;173329;173330;173331;173332;173333;173334;173335;173336;173337;173338	173311			48	
GRNDLMEYAKQHGIPIPVTPK	2	Acetyl (K)	2405.2525	0.25254965	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		82.421	73.106	3	1.2778E-07	40272	160513_QHF_FH_JSI11Kac_6	135.68	120.76			0.14223	0.1398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14223	0.1398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43671000	41609000	2062100	0	0	0	0	0	0	43671000	41609000	2062100	0	0	0	20794	779	19682	127805	173339	173339	407		1	
GRPCKIVEMSTSK	2	Acetyl (K)	1533.7643	0.76433311	2060	P63241;Q9GZV4	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	yes	no	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		41.949	32.352	3	0.014261	18013	160513_QHF_FH_JSI10Kac_6	44.44	32.748			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2340500	2340500	0	0	0	0	0	0	0	2340500	2340500	0	0	0	0	20795	2060	19683	127806;127807	173340;173341	173341	2125		2	
GRPDPYAYIPLNR	0	Unmodified	1530.7943	0.79431133	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				59.519	57.985	3	0.037925	47548	160511_QHF_FH_JSI9i_3	29.912	24.419			1.9646	1.6433	NaN	1	0	Median	1.9646	1.6433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33658000	12697000	20960000	33658000	12697000	20960000	0	0	0	0	0	0	0	0	0	20796	2904	19684	127808	173342	173342			1	
GRPLAEESEQER	0	Unmodified	1399.6692	0.66917039	3514	Q8N357	SLC35F6	Solute carrier family 35 member F6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			9.5689	8.9477	2;3	0.0013395	6646	160511_QHF_FH_JSI9i_3	63.966	54.123			1.0859	1.004	17.11	5	2	Median	1.2532	1.004	10.8	3	2	Median	0.86018	0.98401	30.617	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207660000	109920000	97737000	125070000	61751000	63317000	82589000	48170000	34419000	0	0	0	0	0	0	20797	3514	19685	127809;127810;127811;127812;127813	173343;173344;173345;173346;173347	173347			5	
GRPLPEPYEASR	0	Unmodified	1370.6943	0.69426293	2653	Q15334	LLGL1	Lethal(2) giant larvae protein homolog 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.452	24.113	3	0.05256	19516	160511_QHF_FH_JSI9i_3	25.53	22.663			1.605	1.3279	NaN	1	1	Median	1.605	1.3279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23206000	5055800	18150000	23206000	5055800	18150000	0	0	0	0	0	0	0	0	0	20798	2653	19686	127814	173348	173348			1	
GRPVPMMIPDELAPTYSLDTR	0	Unmodified	2358.1712	0.17118779	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		87.337	86.666	3	7.5732E-07	71332	160511_QHF_FH_JSI9i_3	79.568	64.314			1.2398	1.1366	6.1883	5	0	Median	1.4003	1.1696	4.0472	2	0	Median	0.87973	1.0594	3.9089	2	0	Median	1.2398	1.1754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134090000	68221000	65872000	51810000	22666000	29144000	58080000	30661000	27419000	24203000	14894000	9308900	0	0	0	20799	737	19687	127815;127816;127817;127818;127819;127820	173349;173350;173351;173352;173353;173354;173355;173356;173357;173358;173359;173360	173357			12	
GRPVPMMIPDELAPTYSLDTR	0	Oxidation (M)	2374.1661	0.16610241	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			78.79	77.414	3	0.0010255	64985	160511_QHF_FH_JSI10i_3	49.865	45.512			0.83649	0.97033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83649	0.97033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12981000	9694100	3286700	0	0	0	12981000	9694100	3286700	0	0	0	0	0	0	20800	737	19687	127821	173361	173361		254;255	1	
GRPVPMMIPDELAPTYSLDTR	0	2 Oxidation (M)	2390.161	0.16101703	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	2	1	By MS/MS				3	0			1							1				68.936	67.448	3	0.0013035	55372	160511_QHF_FH_JSI9i_3	44.788	36.187			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20801	737	19687	127822	173362	173362		254;255	1	
GRPYDYNGPR	0	Unmodified	1193.5578	0.55776945	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		16.471	15.409	3	0.0011126	12506	160511_QHF_FH_JSI10i_3	44.882	38.223			0.89069	0.88432	5.2646	2	0	Median	1.1304	0.91786	NaN	1	0	Median	0.70184	0.85201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	226230000	118090000	108140000	143200000	68397000	74800000	83029000	49691000	33338000	0	0	0	0	0	0	20802	1034	19688	127823;127824;127825	173363;173364	173364			2	
GRSDYDGIGSR	0	Unmodified	1181.5425	0.54251332	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			5							2	2		1	11.75	11.174	2;3	0.0037623	8727	160511_QHF_FH_JSI9i_3	39.424	32.451			0.74324	0.80775	13.62	5	1	Median	1.1831	0.97091	0.4443	2	0	Median	0.6787	0.77802	5.3041	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74324	0.73546	NaN	1	0	Median	301160000	154090000	147070000	113930000	50017000	63916000	57285000	31995000	25291000	0	0	0	129940000	72079000	57866000	20803	154	19689	127826;127827;127828;127829;127830	173365;173366;173367;173368;173369	173369			5	
GRSPDELPSAGGDGGK	1	Unmodified	1498.7012	0.7011988	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							2	2	3		16.671	16.199	2;3	0.00015876	13236	160511_QHF_FH_JSI11i_3	111.39	86.533			0.88805	1.0559	24.799	7	1	Median	1.4525	1.2331	7.6349	2	0	Median	0.85497	1.0359	9.2437	2	0	Median	0.66378	0.64059	25.249	3	1	Plateau	NaN	NaN	NaN	0	0	Median	448760000	237580000	211180000	87719000	31487000	56232000	84280000	54129000	30151000	276760000	151960000	124800000	0	0	0	20804	432	19690	127831;127832;127833;127834;127835;127836;127837	173370;173371;173372;173373;173374;173375;173376;173377;173378;173379	173372			10	
GRTGQELK	1	Unmodified	887.48248	0.48247924	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		4.2073	3.8818	2	0.0015438	2108	160511_QHF_FH_JSI9i_3	118.41	76.18			1.0358	1.0327	29.569	3	0	Plateau	1.3372	1.0706	NaN	1	0	Median	0.88318	1.0327	NaN	1	0	Median	1.8673	1.7531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	586550000	283510000	303040000	238590000	107600000	130990000	289580000	153920000	135660000	58382000	21996000	36386000	0	0	0	20805	4694	19691	127838;127839;127840	173380;173381;173382;173383;173384	173384			5	
GRTVIIEQSWGSPK	1	Unmodified	1556.8311	0.83109076	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	11.7	6.13			2						4	2	2		2	49.523	42.764	3	2.7779E-07	22637	160513_QHF_FH_JSI9Kac_6	108.71	70.524			1.3332	1.3019	20.488	6	1	Median	1.4716	1.2151	4.1482	2	0	Median	1.2118	1.4018	4.8468	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3865	1.4976	40.015	2	1	Median	189910000	92279000	97627000	68200000	29312000	38888000	109500000	56931000	52570000	0	0	0	12205000	6036900	6167900	20806	980	19692	127841;127842;127843;127844;127845;127846	173385;173386;173387;173388;173389;173390;173391;173392;173393	173390			9	
GRVEEVR	0	Unmodified	843.45626	0.45626449	1547	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				5.3111	4.9173	2	0.055423	2874	160511_QHF_FH_JSI9i_2	84.916	34.284			0.91376	0.76285	NaN	1	0	Median	0.91376	0.76285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	226710000	103040000	123670000	226710000	103040000	123670000	0	0	0	0	0	0	0	0	0	20807	1547	19693	127847	173394	173394			1	
GRVNFDDYTVNLGGLK	1	Unmodified	1766.8951	0.89514758	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		71.322	70.343	3	2.3541E-07	62591	160511_QHF_FH_JSI11i_3	124.09	112.3			1.2142	1.3578	19.708	3	1	Plateau	1.6593	1.3578	NaN	1	0	Median	0.90249	1.0303	NaN	1	0	Median	1.6337	1.5091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	605070000	269330000	335750000	115410000	47748000	67664000	150660000	80171000	70486000	339010000	141410000	197600000	0	0	0	20808	2242	19694	127848;127849;127850	173395;173396;173397	173395			3	
GRYEAEGQALTEK	1	Unmodified	1450.7052	0.70522155	3715	Q8TD16	BICD2	Protein bicaudal D homolog 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			20.821	19.651	3	0.031836	16152	160511_QHF_FH_JSI10i_3	36.219	29.315			0.2514	0.29534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2514	0.29534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17623000	13755000	3868000	0	0	0	17623000	13755000	3868000	0	0	0	0	0	0	20809	3715	19695	127851	173398	173398			1	
GRYEITAEDSQEK	1	Unmodified	1524.7056	0.70561548	4774	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.433	17.357	3	0.0003954	14078	160511_QHF_FH_JSI10i_3	75.764	58.553			0.64444	0.74856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64444	0.74856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45248000	26491000	18757000	0	0	0	45248000	26491000	18757000	0	0	0	0	0	0	20810	4774	19696	127852	173399	173399			1	
GSAAAVIVYDITK	1	Unmodified	1306.7133	0.71326704	2461	Q13636	RAB31	Ras-related protein Rab-31	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.67	6.6		2							1			2	1	76.512	72.782	2	0.00012089	64291	160511_QHF_FH_JSI12i_2	88.021	76.869			0.92848	0.98497	6.1656	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92433	0.94115	6.4355	2	1	Median	0.92571	1.0115	NaN	1	0	Median	99001000	48655000	50346000	0	0	0	0	0	0	71806000	34556000	37250000	27195000	14099000	13096000	20811	2461	19697	127853;127854;127855	173400;173401	173400			2	
GSAALGGALALAER	0	Unmodified	1255.6884	0.68844927	3084	Q6NZ67	MZT2B	Mitotic-spindle organizing protein 2B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.925	60.925	2	0.00043461	54240	160511_QHF_FH_JSI11i_3	96.745	81.13			0.53855	0.48658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53855	0.48658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48543000	29494000	19050000	0	0	0	0	0	0	48543000	29494000	19050000	0	0	0	20812	3084	19698	127856	173402	173402			1	
GSADPLNSAFHLTYNMVLNLLR	0	Unmodified	2445.2475	0.24746427	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	100.41	91.975	3	1.2048E-146	55537	160513_QHF_FH_JSI10Kac_6	266.14	246.27			1.1111	1.0451	9.2913	4	0	Median	1.2114	1.0249	NaN	1	0	Median	0.84743	1.0124	NaN	1	0	Median	1.2979	1.2387	NaN	1	0	Median	1.0191	1.0657	NaN	1	0	Median	2695000000	1278200000	1416800000	757380000	350500000	406880000	627310000	313150000	314160000	460710000	180640000	280070000	849610000	433960000	415660000	20813	1532	19699	127857;127858;127859;127860	173403;173404;173405;173406	173406			4	
GSAFSTSISK	1	Unmodified	983.49238	0.49237523	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.99	3	4	2					1		3	2	2	3	27.761	26.022	2	2.0291E-07	21944	160511_QHF_FH_JSI12i_2	117.01	92.12			0.91342	0.85404	40.966	8	4	Median	1.3945	1.1756	45.929	2	1	Median	1.4096	1.7265	NaN	1	1	Median	0.97733	0.96195	35.964	2	1	Median	0.62323	0.64257	19.549	3	1	Median	797030000	407660000	389370000	103250000	39022000	64231000	93871000	52444000	41427000	271340000	127950000	143400000	328560000	188250000	140310000	20814	5502	19700	127861;127862;127863;127864;127865;127866;127867;127868;127869;127870	173407;173408;173409;173410;173411;173412;173413;173414;173415	173408			9	
GSAGAPSVENVK	1	Unmodified	1114.5619	0.56185177	1447	P35813	PPM1A	Protein phosphatase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.149	18.652	2	3.1384E-05	15954	160511_QHF_FH_JSI10i_1	106.62	72.366			0.67684	0.73067	28.728	4	0	Median	0.96184	0.80017	NaN	1	0	Median	0.66774	0.79336	NaN	1	0	Median	0.68606	0.67294	NaN	1	0	Median	0.41424	0.43365	NaN	1	0	Median	178790000	103660000	75123000	44826000	18748000	26078000	43335000	27894000	15441000	41971000	26102000	15869000	48656000	30920000	17735000	20815	1447	19701	127871;127872;127873;127874	173416;173417;173418;173419;173420;173421	173420			6	
GSAITGPVAK	1	Unmodified	899.50763	0.50763136	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	5.76	4	4	4		3	4	4	2		6	6	7	6	21.102	16.154	2	1.2297E-10	15358	160511_QHF_FH_JSI10i_2	141.2	119.06			0.9138	0.94215	14.826	25	0	Median	1.2359	0.94566	24.881	6	0	Median	0.76126	0.91662	11.362	6	0	Median	1.0117	0.99102	12.057	7	0	Median	0.86428	0.89771	8.7646	6	0	Median	14630000000	7699000000	6931300000	3587400000	1669000000	1918400000	3610200000	2172900000	1437200000	3617100000	2103300000	1513800000	3815600000	1753700000	2061900000	20816	2022	19702	127875;127876;127877;127878;127879;127880;127881;127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898;127899	173422;173423;173424;173425;173426;173427;173428;173429;173430;173431;173432;173433;173434;173435;173436;173437;173438;173439;173440;173441;173442;173443;173444;173445;173446;173447;173448;173449;173450;173451;173452;173453;173454;173455;173456;173457;173458	173456			34	
GSAMQVSPLMFTDK	1	Unmodified	1510.716	0.71598593	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	74.489	73.894	2	0.00098411	67363	160511_QHF_FH_JSI12i_1	64.199	49.055			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20817	1718	19703	127900;127901;127902	173459;173460;173461	173460			3	
GSAPPGPVPEGSIR	0	Unmodified	1319.6834	0.68336389	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			3	4	3	3	38.747	33.619	2	2.9223E-05	30088	160511_QHF_FH_JSI10i_1	123.01	105.98			0.88327	0.92687	16.456	12	3	Median	1.412	1.2009	33.941	2	1	Median	0.77697	0.91678	11.81	4	1	Median	0.85624	0.83105	5.84	3	1	Plateau	0.82028	0.874	7.0874	3	0	Plateau	2986800000	1696100000	1290700000	623640000	297290000	326350000	798850000	424800000	374050000	891540000	600080000	291460000	672770000	373920000	298850000	20818	2093	19704	127903;127904;127905;127906;127907;127908;127909;127910;127911;127912;127913;127914;127915	173462;173463;173464;173465;173466;173467;173468;173469;173470;173471;173472;173473;173474;173475;173476;173477;173478;173479;173480;173481;173482	173471			20	
GSASMVQK	1	Unmodified	806.39564	0.39563807	5075	Q9NWV4	C1orf123	UPF0587 protein C1orf123	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	7.7148	7.3672	2	0.00064881	5208	160511_QHF_FH_JSI10i_1	101.28	73.177			1.149	1.2258	30.374	4	0	Median	2.0114	1.6609	NaN	1	0	Median	0.98078	1.1382	NaN	1	0	Median	1.3461	1.3201	NaN	1	0	Median	0.77333	0.80491	NaN	1	0	Median	627610000	317440000	310160000	154640000	55588000	99049000	150440000	82750000	67686000	173310000	92437000	80872000	149230000	86670000	62556000	20819	5075	19705	127916;127917;127918;127919	173483	173483			1	
GSASTPVQGSIPEGK	1	Unmodified	1413.71	0.70997257	642	O95081	AGFG2	Arf-GAP domain and FG repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.468	28.873	2	1.7474E-06	25934	160511_QHF_FH_JSI12i_1	131.17	116.5			0.69535	0.727	9.7621	4	1	Median	0.97825	0.82261	NaN	1	0	Median	0.60713	0.72251	NaN	1	0	Median	0.67869	0.64791	NaN	1	1	Median	0.71242	0.73152	NaN	1	0	Median	143560000	87158000	56403000	32896000	14068000	18828000	43597000	26792000	16804000	32851000	21146000	11704000	34218000	25152000	9066400	20820	642	19706	127920;127921;127922;127923	173484;173485;173486;173487	173485			4	
GSASTPVQGSIPEGKPLR	1	Acetyl (K)	1821.9585	0.95847612	642	O95081	AGFG2	Arf-GAP domain and FG repeat-containing protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					2	1	1	61.427	51.998	2;3	0.00041842	26661	160513_QHF_FH_JSI10Kac_3	75.479	62.051			0.88578	0.96455	27.693	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0511	1.234	6.9454	2	0	Median	0.78467	0.747	NaN	1	0	Median	0.7362	0.79187	NaN	1	0	Median	15927000	8324400	7602600	0	0	0	9237700	4701000	4536700	2131000	1041600	1089400	4558400	2581900	1976500	20821	642	19707	127924;127925;127926;127927	173488;173489;173490;173491;173492;173493;173494	173492	320		7	
GSATNYITR	0	Unmodified	981.48796	0.48795855	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	4.92		1					3	1		1	1	2	1	23.676	16.734	2	0.0017134	14154	160511_QHF_FH_JSI11i_2	98.048	74.076			0.95776	0.93906	15.937	5	0	Median	0.88227	0.7315	NaN	1	0	Median	0.74065	0.87632	NaN	1	0	Median	1.0018	0.99441	8.0991	2	0	Median	1.0181	1.089	NaN	1	0	Median	67970000	33219000	34750000	2158000	1231600	926400	2906600	1615200	1291400	60375000	29187000	31188000	2530700	1185800	1344900	20822	150	19708	127928;127929;127930;127931;127932	173495;173496;173497;173498;173499	173498			4	
GSAVHQLSEELR	0	Unmodified	1324.6735	0.67352749	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.199	31.407	2	8.8325E-05	27620	160511_QHF_FH_JSI10i_2	91.961	73.216			0.77863	0.92529	10.766	3	2	Plateau	0.88331	0.77107	NaN	1	1	Median	0.76534	0.92529	NaN	1	0	Median	0.77863	0.76491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92735000	54997000	37738000	19005000	12159000	6845500	55702000	31025000	24676000	18028000	11812000	6216200	0	0	0	20823	1898	19709	127933;127934;127935;127936	173500;173501;173502;173503;173504	173504			5	
GSAYGLSGADSYK	1	Unmodified	1274.5779	0.57789577	1782	P52756	RBM5	RNA-binding protein 5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.673	32.334	2	0.00011092	28871	160511_QHF_FH_JSI10i_1	73.632	63.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20824	1782	19710	127937	173505	173505			1	
GSAYLEAGGTK	1	Unmodified	1052.5138	0.51383895	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	5.63	1						3				1	1	2	21.841	17.711	2	4.6951E-05	15325	160511_QHF_FH_JSI12i_1	96.009	69.625			0.94886	0.95793	5.0861	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9421	0.92409	NaN	1	0	Median	0.95567	0.993	NaN	1	0	Median	55809000	28919000	26890000	0	0	0	0	0	0	2510400	1118000	1392300	53299000	27801000	25498000	20825	2921	19711	127938;127939;127940;127941	173506;173507;173508;173509;173510;173511	173506			6	
GSDALSETSSVSHIEDLEK	1	Unmodified	2002.9331	0.93310881	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	57.797	57.146	2;3	8.7176E-44	50770	160511_QHF_FH_JSI9i_1	170.56	153.62			1.0217	1.0356	12.261	4	1	Median	1.215	1.0055	NaN	1	0	Median	0.91599	1.0666	NaN	1	0	Median	0.90438	0.89163	NaN	1	0	Median	1.1396	1.1969	NaN	1	1	Median	586770000	283100000	303670000	159410000	71107000	88304000	139330000	77479000	61855000	128650000	57923000	70725000	159380000	76595000	82782000	20826	3111	19712	127942;127943;127944;127945;127946	173512;173513;173514;173515;173516	173516			3	
GSDCGIVNVNIPTSGAEIGGAFGGEK	1	Unmodified	2505.1806	0.1805665	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	85.133	84.79	3	6.7483E-10	77168	160511_QHF_FH_JSI12i_1	76.161	68.169			1.125	1.1666	22.738	4	3	Median	NaN	NaN	NaN	0	0	Median	1.2072	1.3609	NaN	1	1	Median	0.97771	0.9372	9.181	2	2	Median	1.3317	1.3876	NaN	1	0	Median	119770000	56132000	63638000	0	0	0	32470000	12891000	19579000	48677000	25515000	23163000	38623000	17727000	20896000	20827	1659	19713	127947;127948;127949;127950	173517;173518;173519;173520;173521	173519			5	
GSDEGQFNEQNFVSK	1	Unmodified	1684.7329	0.73289286	5072	Q9NWU1	OXSM	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.19	41.827	2	2.5704E-05	37794	160511_QHF_FH_JSI11i_1	83.204	73.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20828	5072	19714	127951	173522	173522			1	
GSDEPPVFLEIHYK	1	Unmodified	1629.8039	0.80387296	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.799	69.501	3	0.015052	60153	160511_QHF_FH_JSI12i_3	41.621	34.077			0.86547	0.82877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86547	0.82877	NaN	1	1	Median	32486000	14023000	18463000	0	0	0	0	0	0	0	0	0	32486000	14023000	18463000	20829	1313	19715	127952	173523	173523			1	
GSDEVQILEMPSK	1	Unmodified	1431.6915	0.69154532	4540	Q9BYB4	GNB1L	Guanine nucleotide-binding protein subunit beta-like protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.911	60.032	2	0.00038144	54640	160511_QHF_FH_JSI12i_1	95.498	79.245			1.9143	1.7528	29.721	2	2	Median	2.6374	2.1627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3895	1.4206	NaN	1	1	Median	176200000	58106000	118090000	90237000	25744000	64493000	0	0	0	0	0	0	85963000	32362000	53601000	20830	4540	19716	127953;127954	173524;173525	173524			2	
GSDFDCELR	0	Unmodified	1097.4448	0.44477311	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			2	1	1	2	29.575	24.602	2	9.3785E-06	26303	160511_QHF_FH_JSI11i_1	111.82	107.14			1.1122	0.96487	15.506	6	0	Median	1.2208	0.87006	8.9296	2	0	Median	0.87556	1.0045	NaN	1	0	Median	0.91823	0.88672	NaN	1	0	Median	1.1256	1.1881	0.10672	2	0	Median	1377900000	655070000	722780000	195260000	74971000	120290000	324230000	181870000	142360000	333900000	165670000	168230000	524470000	232560000	291910000	20831	1975	19717	127955;127956;127957;127958;127959;127960	173526;173527;173528;173529;173530;173531;173532	173526			5	
GSDGAASSYQLK	1	Unmodified	1182.5517	0.55168102	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	22.606	19.09	2	1.5923E-05	16186	160511_QHF_FH_JSI11i_1	128.51	104.66			0.95319	1.0887	11.42	7	2	Median	1.4242	1.186	NaN	1	0	Median	0.92311	1.1018	5.7492	2	0	Median	1.1587	1.1317	5.4849	2	2	Median	0.88211	0.93345	12.668	2	0	Median	425650000	214310000	211340000	95399000	42856000	52543000	129790000	64243000	65549000	97288000	47730000	49558000	103170000	59485000	43686000	20832	2516	19718	127961;127962;127963;127964;127965;127966;127967	173533;173534;173535;173536;173537;173538;173539;173540;173541;173542	173533			10	
GSDGAPDTGYLWHVPLTFITSK	1	Unmodified	2361.1641	0.1641118	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.32	101.33	3	9.206E-19	87980	160511_QHF_FH_JSI12i_3	144.22	135.4			0.79374	0.80932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79374	0.80932	NaN	1	1	Median	244240000	169900000	74343000	0	0	0	0	0	0	0	0	0	244240000	169900000	74343000	20833	5142	19719	127968	173543	173543			1	
GSDHSASLEPGELAELVR	0	Unmodified	1865.9119	0.91191986	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							2	2	3	5	71.7	70.953	2;3	4.9477E-23	62968	160511_QHF_FH_JSI10i_2	218.85	204.16			1.2292	1.2248	7.3974	12	5	Median	1.4263	1.2063	1.2073	2	0	Median	0.99344	1.2177	1.7533	2	1	Median	1.2423	1.2483	7.3129	3	1	Median	1.2735	1.2788	10.477	5	3	Linear	1908900000	913960000	994900000	257570000	111380000	146200000	298240000	169760000	128480000	628150000	287050000	341100000	724890000	345770000	379120000	20834	4943	19720	127969;127970;127971;127972;127973;127974;127975;127976;127977;127978;127979;127980	173544;173545;173546;173547;173548;173549;173550;173551;173552;173553;173554;173555;173556;173557	173553			13	
GSDLFSPK	1	Unmodified	849.42323	0.42323303	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	30.287	29.913	2	0.048763	26990	160511_QHF_FH_JSI12i_1	37.549	22.773			0.99509	1.0597	12.863	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1584	1.3062	NaN	1	0	Median	1.0574	1.0333	NaN	1	1	Median	0.99509	1.0597	NaN	1	0	Median	128580000	68055000	60528000	0	0	0	30543000	15233000	15310000	57578000	33693000	23885000	40462000	19129000	21333000	20835	4967	19721	127981;127982;127983	173558;173559	173559			2	
GSDQAIITLR	0	Unmodified	1072.5877	0.58767259	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.66	4	5				2	1	1		2	4	4	3	46.097	42.446	2	4.5717E-11	38225	160511_QHF_FH_JSI11i_1	148.32	103.24			1.0049	1.0467	28.07	13	2	Median	1.0387	0.8748	2.5222	2	1	Median	0.87066	1.0409	7.9637	4	1	Median	1.0076	0.97473	8.8454	4	0	Median	1.6256	1.7401	10.072	3	0	Median	1579800000	742040000	837810000	312710000	146560000	166150000	477330000	262660000	214660000	424180000	222240000	201940000	365630000	110580000	255050000	20836	1441	19722	127984;127985;127986;127987;127988;127989;127990;127991;127992;127993;127994;127995;127996	173560;173561;173562;173563;173564;173565;173566;173567;173568;173569;173570;173571;173572;173573;173574;173575;173576	173560			16	
GSDQNASLYWLAR	0	Unmodified	1479.7106	0.71064128	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	65.467	64.669	2	0.00021601	56409	160511_QHF_FH_JSI11i_2	147.72	132.82			1.1164	1.219	11.815	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1092	1.1184	15.158	2	2	Median	1.1164	1.219	NaN	1	1	Median	59904000	29310000	30594000	0	0	0	0	0	0	38412000	19448000	18964000	21492000	9861600	11630000	20837	4235	19723	127997;127998;127999	173577;173578;173579	173579			3	
GSDSEDEVLR	0	Unmodified	1105.4887	0.48874641	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.541	17.288	2	0.0053218	14707	160511_QHF_FH_JSI10i_1	56.209	47.889			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20838	3778	19724	128000	173580	173580			1	
GSDSIAYDK	1	Unmodified	954.42944	0.42944062	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.921	13.791	2	0.00019108	11405	160511_QHF_FH_JSI11i_1	85.744	41.025			1.2219	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2219	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77067000	34269000	42798000	0	0	0	0	0	0	77067000	34269000	42798000	0	0	0	20839	1440	19725	128001	173581	173581			1	
GSDSLIK	1	Unmodified	718.38612	0.38611924	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	14.033	13.676	2	0.0082919	11031	160511_QHF_FH_JSI11i_1	84.097	12.956			0.83167	0.92585	11.603	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81091	0.95796	13.573	2	0	Median	1.0059	0.98495	NaN	1	0	Median	0.76334	0.81642	NaN	1	0	Median	4382000000	2052500000	2329600000	0	0	0	1537000000	804500000	732500000	1361400000	511010000	850360000	1483700000	736950000	746700000	20840	4296	19726	128002;128003;128004;128005	173582;173583;173584	173582			3	
GSDSLIKGK	2	Acetyl (K)	945.51311	0.51311067	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	31.165	22.702	2	0.00052099	13746	160513_QHF_FH_JSI11Kac_3	99.136	79.432			0.93032	0.90267	18.295	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0549	1.2262	NaN	1	0	Median	0.93032	0.90267	NaN	1	0	Median	0.80597	0.88463	NaN	1	0	Median	23964000	12998000	10966000	0	0	0	6920500	3696600	3223900	9658900	4740300	4918600	7384800	4561200	2823600	20841	4296	19727	128006;128007;128008	173585;173586;173587;173588	173585	3115		4	
GSDVESLDK	1	Unmodified	948.44001	0.4400053	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.125	15.106	2	0.0027249	12375	160511_QHF_FH_JSI9i_1	63.216	39.061			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20842	4261	19728	128009	173589	173589			1	
GSDVIIMLVGNK	1	Unmodified	1244.6799	0.67985842	1175	P20340;Q9NRW1	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.55		1	2					5	4	3	3	3	3	81.975	73.993	2;3	9.1993E-19	39908	160513_QHF_FH_JSI11Kac_6	147.95	110.47			0.83981	0.84524	33.692	11	2	Median	0.80787	0.67609	41.558	3	1	Median	0.59929	0.70138	19.79	2	1	Median	1.0128	0.93864	8.0896	3	0	Median	0.83981	0.92575	46.023	3	0	Median	245150000	147280000	97873000	89992000	52538000	37454000	83406000	53004000	30403000	48068000	27692000	20376000	23685000	14045000	9639800	20843	1175	19729	128010;128011;128012;128013;128014;128015;128016;128017;128018;128019;128020;128021	173590;173591;173592;173593;173594;173595;173596;173597;173598;173599;173600;173601;173602	173593			12	
GSDVIIMLVGNK	1	Oxidation (M)	1260.6748	0.67477304	1175	P20340;Q9NRW1	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	yes	no	0	0	1	0				By MS/MS	14.7	0.471							1	2					3	76.61	66.073	2	0.0020416	32622	160513_QHF_FH_JSI12Kac_5	78.098	61.072			1.4417	1.5876	13.713	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4417	1.5876	13.713	3	3	Median	22004000	10860000	11144000	0	0	0	0	0	0	0	0	0	22004000	10860000	11144000	20844	1175	19729	128022;128023;128024	173603;173604;173605	173605		797	3	
GSEASSEAGVVTTR	0	Unmodified	1349.6423	0.64228694	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	3	2	2	20.983	17.47	2	9.0728E-115	15047	160511_QHF_FH_JSI12i_1	244	193.96			0.73656	0.81512	25.021	7	4	Median	0.92762	0.75882	NaN	1	1	Median	0.72985	0.86819	32.301	3	1	Median	0.78414	0.7608	15.273	2	1	Median	0.73656	0.75287	NaN	1	1	Median	325980000	170730000	155250000	74294000	37358000	36936000	80005000	43011000	36995000	85497000	47548000	37949000	86184000	42817000	43366000	20845	3306	19730	128025;128026;128027;128028;128029;128030;128031;128032;128033	173606;173607;173608;173609;173610;173611;173612;173613;173614;173615;173616	173608			11	
GSEEELADIK	1	Unmodified	1089.519	0.51898391	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	35.928	32.128	2	1.1143E-05	28483	160511_QHF_FH_JSI10i_1	114.4	76.098			0.91866	0.94918	7.017	5	3	Median	NaN	NaN	NaN	0	0	Median	0.84647	0.98107	NaN	1	1	Median	0.9915	0.96988	10.521	2	1	Median	0.87338	0.91137	5.7486	2	1	Median	559090000	317090000	242000000	0	0	0	199540000	113460000	86079000	174930000	94586000	80342000	184620000	109040000	75581000	20846	3814	19731	128034;128035;128036;128037;128038;128039;128040	173617;173618;173619;173620;173621;173622;173623	173621			7	
GSEENLDEAR	0	Unmodified	1118.484	0.48399538	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.724	10.875	2	0.00018673	8359	160511_QHF_FH_JSI9i_1	105.98	64.946			0.68158	0.56614	NaN	1	1	Median	0.68158	0.56614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77000000	44634000	32367000	77000000	44634000	32367000	0	0	0	0	0	0	0	0	0	20847	1440	19732	128041	173624	173624			1	
GSEFMFEK	1	Unmodified	973.42152	0.42151847	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.301	43.808	2	0.0041436	37591	160511_QHF_FH_JSI11i_2	69.598	32.04			1.2795	1.3009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2795	1.3009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84645000	39769000	44875000	0	0	0	0	0	0	84645000	39769000	44875000	0	0	0	20848	2904	19733	128042	173625	173625			1	
GSEGKPSLTLPASAPGPEEALTTVTVAPAPR	1	Unmodified	3000.5768	0.57678014	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	84.274	84.217	3	1.299E-15	75144	160511_QHF_FH_JSI11i_3	83.944	81.568			1.026	1.0485	4.2582	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0743	1.0237	6.0015	2	2	Median	0.98258	1.0175	NaN	1	0	Median	69382000	32033000	37349000	0	0	0	0	0	0	52068000	24512000	27556000	17313000	7521300	9792100	20849	1628	19734	128043;128044;128045	173626;173627;173628;173629	173628			4	
GSEGLYMVNGPPHFTESTVFPR	0	Unmodified	2421.1423	0.1423305	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	81.446	80.787	3	3.7901E-71	70028	160511_QHF_FH_JSI12i_3	229.15	221.53			1.1711	1.1872	9.7473	7	1	Median	1.3935	1.1872	NaN	1	0	Median	1.0711	1.2931	8.0648	2	1	Median	1.1748	1.1554	1.9917	2	0	Median	1.124	1.1981	19.097	2	0	Median	1112600000	528690000	583870000	172080000	77062000	95015000	182830000	95173000	87661000	471150000	215200000	255950000	286500000	141260000	145240000	20850	4535	19735	128046;128047;128048;128049;128050;128051;128052	173630;173631;173632;173633;173634;173635;173636;173637;173638;173639;173640	173640			11	
GSEGLYMVNGPPHFTESTVFPR	0	Oxidation (M)	2437.1372	0.13724512	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	73.924	73.634	3	7.464E-05	63782	160511_QHF_FH_JSI12i_3	55.302	48.201			1.5554	1.5959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5554	1.5959	NaN	1	0	Median	65860000	28693000	37167000	0	0	0	0	0	0	0	0	0	65860000	28693000	37167000	20851	4535	19735	128053	173641	173641		2490	1	
GSEIVAGLEK	1	Unmodified	1001.5393	0.53932542	1312	P28799	GRN	Granulins;Acrogranin;Paragranulin;Granulin-1;Granulin-2;Granulin-3;Granulin-4;Granulin-5;Granulin-6;Granulin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	37.764	37.347	2	0.00073346	33836	160511_QHF_FH_JSI12i_1	70.1	43.498			0.82231	0.79838	20.037	3	2	Median	NaN	NaN	NaN	0	0	Median	0.51068	0.59476	NaN	1	1	Median	0.82259	0.79838	NaN	1	1	Median	0.82231	0.87202	NaN	1	0	Median	210430000	111390000	99042000	0	0	0	68975000	41714000	27262000	81531000	41301000	40230000	59926000	28376000	31550000	20852	1312	19736	128054;128055;128056;128057	173642;173643;173644;173645	173644			4	
GSELPVLER	0	Unmodified	998.53966	0.53965977	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				44.848	43.795	2	0.014914	38338	160511_QHF_FH_JSI9i_2	54.982	10.535			1.0479	0.89387	NaN	1	1	Median	1.0479	0.89387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10593000	4951000	5642000	10593000	4951000	5642000	0	0	0	0	0	0	0	0	0	20853	4495	19737	128058	173646	173646			1	
GSELQNYFTK	1	Unmodified	1185.5666	0.5666028	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.53	3	4					3	5		4	4	4	3	55.074	48.93	2	5.251E-13	42036	160511_QHF_FH_JSI12i_2	134.57	120.99			1.011	1.0846	29.746	13	4	Median	1.163	0.99882	42.012	3	2	Median	0.77741	0.93536	24.873	4	1	Median	1.1627	1.1381	38.062	4	1	Median	0.94986	1.0318	7.2281	2	0	Median	461700000	199630000	262070000	132890000	49571000	83314000	141730000	72940000	68791000	179030000	72933000	106100000	8054100	4189200	3864900	20854	1945	19738	128059;128060;128061;128062;128063;128064;128065;128066;128067;128068;128069;128070;128071;128072;128073	173647;173648;173649;173650;173651;173652;173653;173654;173655;173656;173657;173658;173659;173660;173661;173662;173663;173664;173665	173648			19	
GSELQTQAK	1	Unmodified	960.48762	0.4876242	64	CON__P81644			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.67	5.44	3				3	3					2	4	3	9.2663	4.3441	2	1.7688E-16	5556	160511_QHF_FH_JSI11i_1	198.54	174.39		+	1.2011	1.2984	31.567	9	5	Median	NaN	NaN	NaN	0	0	Median	0.83669	0.9891	12.88	2	1	Median	1.4421	1.3994	43.643	4	3	Median	1.5907	1.6856	15.71	3	1	Plateau	1841900000	956880000	884980000	0	0	0	416720000	233130000	183590000	684640000	291220000	393420000	740500000	432540000	307960000	20855	64	19739	128074;128075;128076;128077;128078;128079;128080;128081;128082	173666;173667;173668;173669;173670;173671;173672;173673;173674;173675;173676;173677;173678	173666			13	
GSEMKYALK	2	Acetyl (K)	1067.5321	0.53213155	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	14	0							3				1	1	1	46.66	36.42	2	1.1426E-07	21714	160513_QHF_FH_JSI11Kac_4	145.17	112.33			0.38335	0.37524	68.147	3	1	Median	NaN	NaN	NaN	0	0	Median	0.88095	1.0509	NaN	1	0	Median	0.38335	0.37524	NaN	1	0	Median	0.27084	0.28984	NaN	1	1	Median	23526000	16639000	6886600	0	0	0	4931100	3205300	1725900	15263000	10667000	4595800	3331800	2766800	564930	20856	4361	19740	128083;128084;128085	173679;173680;173681	173680	3144		3	
GSEQESVK	1	Unmodified	862.40323	0.40322587	1121	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	4.7177	4.4273	2	0.00033307	2360	160511_QHF_FH_JSI12i_1	111.74	91.219			0.88389	0.99623	41.609	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1054	1.337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70676	0.7423	NaN	1	0	Median	157770000	92184000	65587000	0	0	0	80178000	41494000	38684000	0	0	0	77593000	50690000	26903000	20857	1121	19741	128086;128087	173682	173682			1	
GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVK	2	Unmodified	4030.9225	0.92249113	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		81.877	81.877	4	6.2777E-06	73094	160511_QHF_FH_JSI11i_3	47.719	40.518			0.93445	0.89465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93445	0.89465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26262000	21646000	4615800	0	0	0	0	0	0	26262000	21646000	4615800	0	0	0	20858	3132	19742	128088	173683	173683			1	
GSESHELNEGGDEK	1	Unmodified	1486.6172	0.6171944	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	7.3996	7.1641	2	0.00028277	4868	160511_QHF_FH_JSI11i_1	82.705	57.488			1.0663	1.2028	6.8669	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0663	1.2463	NaN	1	0	Median	1.2583	1.2028	NaN	1	0	Median	1.0567	1.0915	NaN	1	0	Median	134540000	69757000	64781000	0	0	0	40485000	22765000	17720000	47354000	24044000	23310000	46699000	22948000	23751000	20859	3003	19743	128089;128090;128091	173684	173684			1	
GSETDSAQDQPVK	1	Unmodified	1360.6107	0.61065246	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.13	4	2		2	3					1	4	3	3	11.1	7.5091	2	9.4331E-253	6877	160511_QHF_FH_JSI9i_1	355.02	311.94			0.86293	0.93593	19.765	10	1	Median	1.2343	1.0222	NaN	1	0	Median	0.8341	0.92812	6.851	3	0	Median	1.0145	0.98179	22.571	3	0	Median	0.72703	0.77848	24.757	3	1	Median	1935600000	1071400000	864180000	512510000	245560000	266940000	479400000	309540000	169860000	555080000	314830000	240260000	388590000	201460000	187120000	20860	1351	19744	128092;128093;128094;128095;128096;128097;128098;128099;128100;128101;128102	173685;173686;173687;173688;173689;173690;173691;173692;173693;173694;173695;173696;173697;173698;173699;173700;173701;173702;173703;173704	173697			20	
GSETPGATPGSK	1	Unmodified	1087.5146	0.51456723	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	5.47	4		2		3	3				3	3	3	3	8.9531	4.814	2	3.0923E-07	5618	160511_QHF_FH_JSI12i_1	160.33	129.03			0.88992	0.99776	25.386	11	1	Median	0.74633	0.62431	50.904	2	1	Median	0.84113	0.99776	1.0839	3	0	Plateau	1.0584	1.0237	4.3539	3	0	Median	0.88992	0.92302	4.9007	3	0	Median	2266600000	1139400000	1127200000	618410000	277410000	341000000	571060000	312850000	258210000	531760000	252530000	279240000	545400000	296600000	248800000	20861	542	19745	128103;128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114	173705;173706;173707;173708;173709;173710;173711;173712;173713;173714;173715;173716;173717;173718;173719;173720;173721	173708			17	
GSEVGFHGAAPDISVK	1	Unmodified	1569.7787	0.77872084	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	2.97	1	11	5					1		5	4	5	4	47.692	46.705	2;3	1.6994E-22	40001	160511_QHF_FH_JSI12i_2	143.28	133.44			0.94672	0.92932	20.282	14	7	Median	1.0304	0.86415	15.347	4	3	Median	0.71039	0.87887	22.613	3	0	Median	0.78709	0.8004	25.84	4	3	Median	0.96173	1.0512	1.3361	3	1	Median	2178600000	1238300000	940310000	357860000	201600000	156260000	447440000	280290000	167150000	848840000	461480000	387370000	524470000	294940000	229530000	20862	2286	19746	128115;128116;128117;128118;128119;128120;128121;128122;128123;128124;128125;128126;128127;128128;128129;128130;128131;128132	173722;173723;173724;173725;173726;173727;173728;173729;173730;173731;173732;173733;173734;173735;173736;173737;173738;173739;173740;173741;173742;173743;173744;173745	173726			24	
GSFAPGHGPR	0	Unmodified	981.47806	0.47806257	5083	Q9NX00	TMEM160	Transmembrane protein 160	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			9.8743	9.2586	2	0.0063262	7007	160511_QHF_FH_JSI10i_3	52.867	18.614			1.0486	1.0269	8.3553	2	0	Median	1.1622	0.96797	NaN	1	0	Median	0.94603	1.0894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115180000	54134000	61048000	73670000	35500000	38170000	41513000	18635000	22878000	0	0	0	0	0	0	20863	5083	19747	128133;128134	173746;173747	173746			1	
GSFETAK	1	Unmodified	738.35482	0.35481911	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	8.5663	8.2159	2	0.030114	6070	160511_QHF_FH_JSI10i_1	52.268	28.959			0.91231	0.87393	5.5731	4	0	Median	1.0459	0.85637	NaN	1	0	Median	0.72308	0.84201	NaN	1	0	Median	0.89932	0.89185	NaN	1	0	Median	0.92548	0.95439	NaN	1	0	Median	386530000	202320000	184210000	74634000	38104000	36530000	136920000	74220000	62697000	102610000	57227000	45378000	72375000	32770000	39605000	20864	618	19748	128135;128136;128137;128138	173748	173748			1	
GSFGELALMYNTPR	0	Unmodified	1554.7501	0.75006325	1043	P13861;P31323	PRKAR2A;PRKAR2B	cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	2	4	78.775	78.273	2;3	1.2698E-07	68032	160511_QHF_FH_JSI12i_3	181.66	146.25			1.2243	1.3242	29.17	8	5	Median	1.9144	1.6241	NaN	1	1	Median	0.6131	0.78925	NaN	1	1	Median	1.1178	1.0589	49.473	2	0	Median	1.2243	1.3242	9.978	4	3	Median	307070000	125900000	181170000	10339000	4315800	6023200	12759000	7575200	5184300	92183000	36031000	56152000	191790000	77976000	113810000	20865	1043	19749	128139;128140;128141;128142;128143;128144;128145;128146;128147	173749;173750;173751;173752;173753;173754;173755;173756;173757	173757			9	
GSFGEVFK	1	Unmodified	869.42832	0.42831841	5206;5721	Q9P289;Q9Y6E0	STK26;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.56	1	5	3					3		2	2	4	4	47.109	43.009	2	1.3665E-05	36757	160511_QHF_FH_JSI12i_2	116.73	73.479			1.2848	1.226	8.6292	6	1	Median	1.4145	1.2076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3275	1.3608	4.7999	3	0	Plateau	1.0021	1.1161	0.85859	2	1	Median	825490000	360300000	465190000	155060000	67810000	87255000	0	0	0	444070000	185980000	258090000	226360000	106510000	119850000	20866	5206;5721	19750	128148;128149;128150;128151;128152;128153;128154;128155;128156;128157;128158;128159	173758;173759;173760;173761;173762;173763;173764;173765;173766;173767;173768;173769	173761			12	
GSFKYAWVLDK	2	Unmodified	1312.6816	0.68157298	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.97	4.7		2	64						12	23	28	14	13	67.068	64.671	2;3	1.9615E-22	53295	160511_QHF_FH_JSI10i_3	176.78	149.03			0.79432	0.76426	144.94	67	10	Median	0.93341	0.76426	31.864	21	0	Median	0.56064	0.64337	172.2	25	5	Median	0.84601	0.8066	189.81	11	3	Median	1.0284	1.0449	147.41	10	2	Median	204530000000	120750000000	83779000000	57218000000	29665000000	27553000000	74678000000	46234000000	28444000000	45314000000	27038000000	18276000000	27320000000	17814000000	9506700000	20867	2072;2231	19751	128160;128161;128162;128163;128164;128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177;128178;128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190;128191;128192;128193;128194;128195;128196;128197;128198;128199;128200;128201;128202;128203;128204;128205;128206;128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222;128223;128224;128225;128226;128227;128228;128229;128230;128231;128232;128233;128234;128235;128236;128237	173770;173771;173772;173773;173774;173775;173776;173777;173778;173779;173780;173781;173782;173783;173784;173785;173786;173787;173788;173789;173790;173791;173792;173793;173794;173795;173796;173797;173798;173799;173800;173801;173802;173803;173804;173805;173806;173807;173808;173809;173810;173811;173812;173813;173814;173815;173816;173817;173818;173819;173820;173821;173822;173823;173824;173825;173826;173827;173828;173829;173830;173831;173832;173833;173834;173835;173836;173837;173838;173839;173840;173841;173842;173843;173844;173845;173846;173847;173848;173849;173850;173851;173852;173853;173854;173855;173856;173857;173858;173859;173860;173861;173862;173863;173864;173865;173866;173867;173868;173869;173870;173871;173872;173873;173874;173875	173791			104	
GSFKYAWVLDKLK	3	Unmodified	1553.8606	0.86059998	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	2		By MS/MS			16	0									1		1			77.083	70.843	4	0.00090875	38759	160513_QHF_FH_JSI10Kac_6	82.651	68.905			0.53009	0.6262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53009	0.6262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129740000	80632000	49104000	0	0	0	129740000	80632000	49104000	0	0	0	0	0	0	20868	2072;2231	19752	128238	173876	173876			1	
GSFLEGSEVR	0	Unmodified	1079.5247	0.52473799	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	36.489	35.546	2	0.00094437	30208	160511_QHF_FH_JSI11i_2	73.985	57.209			0.78632	0.74121	11.249	4	3	Median	0.7979	0.70399	NaN	1	1	Median	0.54844	0.67095	NaN	1	1	Median	0.79517	0.78039	NaN	1	1	Median	0.77757	0.86387	NaN	1	0	Median	136090000	80726000	55361000	27704000	16297000	11408000	32028000	18817000	13211000	48678000	29885000	18793000	27677000	15727000	11949000	20869	1512	19753	128239;128240;128241;128242;128243;128244	173877;173878;173879;173880;173881;173882;173883	173882			7	
GSFMLGLETHDR	0	Unmodified	1361.6398	0.63978452	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	51.798	51.224	2;3	3.7992E-06	43715	160511_QHF_FH_JSI12i_3	113.24	109.57			0.96351	0.97545	46.872	7	1	Median	1.9587	1.6655	NaN	1	1	Median	1.3071	1.5533	89.583	2	0	Median	1.0078	0.95179	7.117	2	0	Median	0.88644	0.90712	10.27	2	0	Median	490520000	251840000	238680000	21680000	8538900	13141000	85517000	42057000	43460000	175900000	84591000	91309000	207420000	116650000	90768000	20870	3905	19754	128245;128246;128247;128248;128249;128250;128251	173884;173885;173886;173887;173888;173889;173890;173891;173892;173893;173894;173895	173893			12	
GSFPLPQLR	0	Unmodified	1013.5658	0.56581494	2903	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.488	64.198	2	0.0153	55346	160511_QHF_FH_JSI12i_3	54.611	38.138			0.76071	0.78461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76071	0.78461	NaN	1	1	Median	23386000	12484000	10902000	0	0	0	0	0	0	0	0	0	23386000	12484000	10902000	20871	2903	19755	128252	173896	173896			1	
GSFQVTR	0	Unmodified	793.40825	0.40825167	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		3	2					1		1	1	2	2	16.967	15.009	2	0.0017705	12793	160511_QHF_FH_JSI9i_2	116.88	24.417			1.1328	1.098	18.064	6	1	Median	1.3202	1.1279	NaN	1	0	Median	0.89143	1.0688	NaN	1	0	Median	1.0231	0.98506	29.084	2	1	Median	1.1328	1.2136	18.321	2	0	Median	1021300000	507330000	513950000	175230000	78031000	97195000	151280000	85704000	65572000	278830000	137970000	140860000	415940000	205620000	210320000	20872	1747	19756	128253;128254;128255;128256;128257;128258	173897;173898;173899;173900;173901;173902;173903	173898			7	
GSFSALVGR	0	Unmodified	892.47667	0.47666558	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		41.79	41.023	2	1.0109E-12	34279	160511_QHF_FH_JSI10i_3	169.06	140.64			0.98679	1.0145	13.035	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8184	0.92517	NaN	1	0	Median	1.1898	1.1125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	207020000	106040000	100980000	0	0	0	129830000	67663000	62164000	77195000	38377000	38818000	0	0	0	20873	2456	19757	128259;128260	173904;173905;173906	173906			3	
GSFSDTGLGDGK	1	Unmodified	1139.5095	0.50948185	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3				1	1	2	1	29.795	22.541	2	7.686E-40	6040	160513_QHF_FH_JSI9Kac_3	199.68	159.63			0.91671	0.993	10.157	5	1	Plateau	1.2491	0.95899	NaN	1	0	Median	0.68304	0.80094	NaN	1	1	Median	0.95464	0.92646	13.344	2	0	Median	0.91671	0.96848	NaN	1	0	Median	536840000	272310000	264540000	18247000	9122300	9124300	5225200	3029200	2196000	264890000	133190000	131700000	248480000	126960000	121520000	20874	5542	19758	128261;128262;128263;128264;128265	173907;173908;173909;173910;173911;173912;173913;173914;173915	173913			9	
GSFSEQGINEFLR	0	Unmodified	1482.7103	0.71030693	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.76	7		5					4		4	4	4	4	73.798	70.638	2	7.2225E-57	65102	160511_QHF_FH_JSI11i_1	268.77	230.21			1.0781	1.1243	12.891	16	9	Median	1.3333	1.1053	20.309	4	2	Median	0.96175	0.9868	7.7111	4	3	Linear	1.1313	1.0983	8.3601	4	2	Median	1.1903	1.2323	12.957	4	2	Median	1680500000	792190000	888330000	218990000	97050000	121940000	342710000	185390000	157320000	694920000	304130000	390790000	423910000	205620000	218290000	20875	2628	19759	128266;128267;128268;128269;128270;128271;128272;128273;128274;128275;128276;128277;128278;128279;128280;128281	173916;173917;173918;173919;173920;173921;173922;173923;173924;173925;173926;173927;173928;173929;173930;173931;173932	173918			17	
GSFSLSVR	0	Unmodified	851.45012	0.45011648	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	15.8	0.4								1	4	2	1	1	1	48.88	39.354	2	0.003464	21715	160513_QHF_FH_JSI10Kac_6	86.095	57.197			1.3378	1.3188	16.582	5	0	Median	1.4752	1.2304	17.887	2	0	Median	0.82854	0.98909	NaN	1	0	Median	1.38	1.3188	NaN	1	0	Median	1.3378	1.4436	NaN	1	0	Median	50300000	24002000	26298000	10608000	3853500	6754800	22600000	11725000	10875000	9505500	4647000	4858500	7586500	3776800	3809800	20876	885	19760	128282;128283;128284;128285;128286	173933;173934	173934			2	
GSFSQADVHR	0	Unmodified	1102.5156	0.51557028	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	13.026	12.907	2;3	7.1129E-10	10350	160511_QHF_FH_JSI11i_3	138.08	115.59			1.0495	1.0801	9.2592	5	0	Median	NaN	NaN	NaN	0	0	Median	0.99635	1.1161	NaN	1	0	Median	1.0441	0.98147	12.6	2	0	Median	1.0831	1.1029	2.9482	2	0	Median	431510000	204910000	226590000	0	0	0	22215000	10220000	11995000	171510000	69021000	102490000	237780000	125670000	112110000	20877	2214	19761	128287;128288;128289;128290;128291	173935;173936;173937;173938	173936			4	
GSFVNGVFEVHKK	2	Unmodified	1446.7619	0.76194857	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		44.729	43.147	3;4	0.0050735	35924	160511_QHF_FH_JSI10i_3	49.149	37.879			2.8772	2.3308	52.385	3	2	Plateau	2.3459	1.9393	27.769	2	1	Median	0.74803	0.83624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89937000	38250000	51686000	60855000	21947000	38908000	29082000	16304000	12778000	0	0	0	0	0	0	20878	2752	19762	128292;128293;128294;128295	173939;173940;173941;173942	173940			3	
GSFYAFSYYYDR	0	Unmodified	1537.6514	0.65139506	509	O75356	ENTPD5	Ectonucleoside triphosphate diphosphohydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.13	69.77	2	1.7066E-50	36486	160513_QHF_FH_JSI12Kac_6	215.72	208.59			1.102	1.0559	17.341	4	0	Median	1.3026	1.1204	NaN	1	0	Median	0.74874	0.89748	NaN	1	0	Median	1.3616	1.3443	NaN	1	0	Median	0.93239	0.995	NaN	1	0	Median	257840000	128780000	129060000	52927000	22948000	29979000	124630000	69796000	54835000	38490000	13677000	24814000	41789000	22357000	19431000	20879	509	19763	128296;128297;128298;128299	173943;173944;173945;173946;173947;173948;173949	173947			7	
GSGASSGDTAPAADK	1	Unmodified	1290.5688	0.56878765	4754	Q9H6U8	ALG9	Alpha-1,2-mannosyltransferase ALG9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	6.8011	6.4621	2	2.0817E-25	4391	160511_QHF_FH_JSI12i_1	221.8	205.6			1.2395	1.3266	13.676	5	4	Median	1.2395	1.0288	NaN	1	0	Median	1.128	1.3403	NaN	1	1	Median	1.365	1.3266	NaN	1	1	Median	1.2158	1.2515	17.111	2	2	Median	271280000	124520000	146770000	57470000	24137000	33333000	61040000	27722000	33318000	42902000	19486000	23416000	109870000	53169000	56699000	20880	4754	19764	128300;128301;128302;128303;128304	173950;173951;173952;173953;173954;173955	173951			6	
GSGDGEMGKPR	1	Unmodified	1089.4873	0.48730662	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	1		By matching		By MS/MS	2.5	0.5		1	1								1		1	5.5855	5.4188	3	0.047744	3169	160511_QHF_FH_JSI12i_3	26.627	7.8812			1.0222	1.1272	40.766	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2468	1.5038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83803	0.8449	NaN	1	0	Median	131260000	61115000	70140000	0	0	0	50762000	18778000	31984000	0	0	0	80494000	42337000	38156000	20881	427	19765	128305;128306	173956	173956			1	
GSGDPSSSSSSGNPLVYLDVDANGK	1	Unmodified	2409.0932	0.093191281	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										2	2	3	76.758	76.412	2;3	1.1661E-28	69236	160511_QHF_FH_JSI10i_1	220.6	201.54			1.0542	1.1483	12.409	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0753	1.2506	6.1813	2	0	Median	1.1986	1.1483	NaN	1	0	Median	0.97029	0.98744	3.2887	2	0	Median	134410000	62928000	71486000	0	0	0	62317000	26964000	35353000	22668000	8151400	14516000	49429000	27813000	21617000	20882	1348	19766	128307;128308;128309;128310;128311;128312;128313	173957;173958;173959;173960;173961;173962;173963;173964;173965;173966;173967	173963			11	
GSGDPSSSSSSGNPLVYLDVDANGKPLGR	1	Unmodified	2832.3526	0.35259387	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	78.451	78.154	3	1.1802E-22	71297	160511_QHF_FH_JSI12i_1	123.71	120.49			0.73982	0.83114	12.541	4	3	Median	NaN	NaN	NaN	0	0	Median	0.70723	0.83114	5.9132	2	2	Median	0.7386	0.71754	NaN	1	1	Median	0.92395	0.96432	NaN	1	0	Median	139160000	79700000	59459000	0	0	0	83791000	48175000	35616000	17096000	11102000	5993600	38273000	20423000	17850000	20883	1348	19767	128314;128315;128316;128317	173968;173969;173970;173971;173972;173973	173970			6	
GSGEQDWVNRPK	1	Unmodified	1371.6531	0.6531264	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		18.357	18.357	3	0.00033626	15350	160511_QHF_FH_JSI11i_3	56.122	45.574			0.53767	0.50735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53767	0.50735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65699000	36029000	29669000	0	0	0	0	0	0	65699000	36029000	29669000	0	0	0	20884	3283	19768	128318	173974	173974			1	
GSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEK	1	Unmodified	3246.4926	0.4926096	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		41.268	40.508	4	2.0877E-26	33785	160511_QHF_FH_JSI10i_3	101.2	99.116			0.68455	0.71318	22.682	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72432	0.83724	NaN	1	0	Median	0.64697	0.6075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	104700000	59984000	44714000	0	0	0	68950000	32705000	36245000	35749000	27279000	8469900	0	0	0	20885	5654	19769	128319;128320	173975;173976;173977	173977			3	
GSGGEWK	1	Unmodified	719.32385	0.32385333	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	6.942	6.593	2	0.0023716	4235	160511_QHF_FH_JSI11i_2	105.2	58.849			0.79593	0.89121	10.147	5	0	Median	1.0459	0.89121	NaN	1	0	Median	0.77412	0.89409	NaN	1	0	Median	1.0073	0.9882	NaN	1	0	Median	0.72924	0.79129	7.5287	2	0	Median	1080200000	486770000	593440000	138400000	73325000	65080000	328870000	143010000	185860000	250970000	92923000	158050000	361970000	177520000	184450000	20886	2286	19770	128321;128322;128323;128324;128325;128326	173978;173979;173980;173981;173982	173982			5	
GSGGFGSTGK	1	Unmodified	853.393	0.39299553	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	3.76		2	5				1			4	2	1	1	7.8845	5.9881	2	0.0026282	5087	160511_QHF_FH_JSI9i_3	61.593	41.817			0.81166	0.74048	29.958	6	6	Median	0.8555	0.71929	21.165	2	2	Median	0.92966	1.091	0.43525	2	2	Median	0.59805	0.53941	NaN	1	1	Median	0.64585	0.65634	NaN	1	1	Median	228790000	128400000	100390000	119630000	67006000	52627000	41503000	25302000	16200000	33619000	19937000	13681000	34031000	16150000	17881000	20887	1402	19771	128327;128328;128329;128330;128331;128332;128333;128334	173983;173984;173985;173986;173987;173988;173989;173990	173987			8	
GSGGFGSTGKN	1	Unmodified	967.43592	0.43592298	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.97	4	3	2			3	3	1		4	3	4	5	7.863	4.3752	2	2.9117E-23	4562	160511_QHF_FH_JSI12i_3	176.78	148.68			0.79587	0.83668	8.8325	15	0	Median	1.1076	0.91087	6.746	4	0	Median	0.69858	0.81699	4.2993	3	0	Median	0.81487	0.79286	10.375	3	0	Median	0.78453	0.84232	7.0074	5	0	Median	2855900000	1495500000	1360400000	742380000	337390000	404990000	593430000	367500000	225940000	793510000	410590000	382910000	726590000	380020000	346570000	20888	1402	19772	128335;128336;128337;128338;128339;128340;128341;128342;128343;128344;128345;128346;128347;128348;128349;128350	173991;173992;173993;173994;173995;173996;173997;173998;173999;174000;174001;174002;174003;174004;174005;174006;174007;174008;174009;174010;174011	174010			20	
GSGGLFSPSTAHVPDGALGQR	0	Unmodified	2009.9919	0.99190151	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		60.077	59.061	3	4.6613E-14	49365	160511_QHF_FH_JSI10i_3	126.26	122.66			1.1136	1.0322	3.0463	3	0	Median	1.2151	0.98125	NaN	1	0	Median	0.91175	1.0364	NaN	1	0	Median	1.1136	1.0322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325100000	158920000	166170000	96663000	37997000	58666000	159880000	80851000	79028000	68556000	40076000	28479000	0	0	0	20889	4581	19773	128351;128352;128353	174012;174013;174014;174015;174016	174014			5	
GSGIFDESTPVQTR	0	Unmodified	1492.7158	0.71578623	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	3	1	3	50.158	47.113	2	2.6717E-15	41703	160511_QHF_FH_JSI10i_2	167.18	153.09			1.1188	1.0759	29.866	9	3	Median	1.3076	1.0886	5.4971	2	0	Median	0.85938	1.0267	6.9231	3	1	Plateau	1.1188	1.0759	NaN	1	0	Median	1.2202	1.3183	42.311	3	2	Median	2244900000	1059900000	1185000000	427490000	178640000	248860000	555580000	299930000	255640000	584310000	257890000	326420000	677540000	323460000	354090000	20890	4795	19774	128354;128355;128356;128357;128358;128359;128360;128361;128362	174017;174018;174019;174020;174021;174022;174023;174024	174023			8	
GSGIQWDLRK	1	Unmodified	1158.6146	0.61455605	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By matching	3	0			7							2	2	2	1	38.922	38.04	2;3	1.8368E-08	31123	160511_QHF_FH_JSI9i_3	126.55	97.385			0.87902	0.93822	7.4228	7	0	Median	1.2343	0.99455	8.2466	2	0	Median	0.81328	0.94212	4.7226	2	0	Median	0.94873	0.88696	9.0267	2	0	Median	0.87902	0.88835	NaN	1	0	Median	1069200000	505880000	563350000	306750000	141480000	165270000	358370000	164390000	193980000	319560000	146950000	172620000	84546000	53067000	31479000	20891	497	19775	128363;128364;128365;128366;128367;128368;128369	174025;174026	174026			2	
GSGNLEAIHIIK	1	Unmodified	1250.6983	0.69828568	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	6.54	2	8	8				1	7	7	8	10	8	7	52.133	47.073	2;3	1.6225E-42	41255	160511_QHF_FH_JSI10i_2	210.35	148.57			1.0901	1.1094	13.012	33	4	Median	1.2138	1.0265	15.347	8	2	Median	0.97514	1.1389	13.73	10	2	Median	1.0961	1.0518	10.715	8	0	Median	1.072	1.1498	13.354	7	0	Median	12402000000	6027400000	6375100000	1454600000	630000000	824630000	2146600000	1149400000	997160000	4786900000	2441900000	2345000000	4014300000	1806000000	2208300000	20892	2090	19776	128370;128371;128372;128373;128374;128375;128376;128377;128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388;128389;128390;128391;128392;128393;128394;128395;128396;128397;128398;128399;128400;128401;128402	174027;174028;174029;174030;174031;174032;174033;174034;174035;174036;174037;174038;174039;174040;174041;174042;174043;174044;174045;174046;174047;174048;174049;174050;174051;174052;174053;174054;174055;174056;174057;174058;174059;174060;174061;174062;174063;174064;174065;174066;174067;174068;174069;174070;174071;174072;174073;174074;174075;174076;174077;174078;174079;174080;174081;174082;174083;174084;174085;174086;174087;174088;174089;174090;174091;174092;174093	174074			67	
GSGNLEAIHIIKK	2	Unmodified	1378.7932	0.79324869	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	37.041	36.232	3	0.027932	30530	160511_QHF_FH_JSI10i_3	29.287	16.927			1.1781	1.0761	98.023	2	0	Median	0.64468	0.53808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1529	2.1522	NaN	1	0	Median	61890000	25953000	35937000	19422000	13050000	6372100	0	0	0	0	0	0	42468000	12903000	29565000	20893	2090	19777	128403;128404;128405	174094;174095	174094			2	
GSGNLEAIHIIKK	2	Acetyl (K)	1420.8038	0.80381338	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	61.515	52.182	3	3.3816E-07	28311	160513_QHF_FH_JSI11Kac_6	106.52	95.419			0.58157	0.63099	120.14	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2607	1.4756	NaN	1	0	Median	0.26829	0.26983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53977000	38792000	15185000	0	0	0	11713000	4175100	7538400	36327000	28681000	7646600	5936000	5936000	0	20894	2090	19777	128406;128407;128408	174096;174097	174096	2173		2	
GSGPLSPSIQSR	0	Unmodified	1184.6149	0.61494998	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.992	27.947	2	0.031016	23418	160511_QHF_FH_JSI12i_3	47.559	22.122			0.85692	0.8881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85692	0.8881	NaN	1	1	Median	24475000	14243000	10232000	0	0	0	0	0	0	0	0	0	24475000	14243000	10232000	20895	971	19778	128409	174098	174098			1	
GSGPPPTEEEEGER	0	Unmodified	1469.627	0.62703081	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	11.868	11.47	2	0.0010281	8797	160511_QHF_FH_JSI9i_1	63.727	47.836			0.65843	0.6607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65843	0.6607	NaN	1	1	Median	17186000	11612000	5573500	0	0	0	0	0	0	0	0	0	17186000	11612000	5573500	20896	5466	19779	128410;128411	174099;174100	174100			2	
GSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGR	0	Oxidation (M)	3523.4912	0.49122939	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	82.155	72.713	4	2.9009E-12	38580	160513_QHF_FH_JSI12Kac_6	85.448	83.865			1.0645	1.1352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0645	1.1352	NaN	1	0	Median	55042000	28477000	26564000	0	0	0	0	0	0	0	0	0	55042000	28477000	26564000	20897	1262	19780	128412	174101	174101		887	1	
GSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGR	0	Unmodified	3507.4963	0.49631476	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			87.659	81.94	3;4	1.1694E-235	46244	160513_QHF_FH_JSI10Kac_6	349.05	344.63			0.75811	0.89652	0.47884	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75811	0.89652	0.47884	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	309420000	216670000	92748000	0	0	0	309420000	216670000	92748000	0	0	0	0	0	0	20898	1262	19780	128413;128414	174102;174103	174103			2	
GSGQGDSLYPVGYLDK	1	Unmodified	1654.7839	0.7838658	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.743	64.129	2	3.0952E-07	58361	160511_QHF_FH_JSI12i_1	153	136.37			0.7677	0.81627	21.585	4	4	Median	0.69866	0.57072	NaN	1	1	Median	0.65648	0.76174	NaN	1	1	Median	0.94445	0.92516	NaN	1	1	Median	0.84355	0.8747	NaN	1	1	Median	405640000	228540000	177100000	103790000	59963000	43827000	103490000	61149000	42344000	95459000	53072000	42387000	102900000	54358000	48542000	20899	2892	19781	128415;128416;128417;128418	174104;174105;174106;174107	174105			4	
GSGSAGWDVIQMTPQEIAVNLRPGDK	1	Unmodified	2725.3494	0.34936316	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			97.864	97.728	3	0.0014846	86578	160511_QHF_FH_JSI10i_2	36.576	28.954			0.74016	0.91593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74016	0.91593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14375000	7819100	6555600	0	0	0	14375000	7819100	6555600	0	0	0	0	0	0	20900	1136	19782	128419	174108;174109	174109			2	
GSGSGFKPFK	2	Unmodified	1010.5185	0.5185304	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	20.263	19.78	2;3	5.4693E-07	16116	160511_QHF_FH_JSI12i_3	123.35	96.101			0.82343	0.78602	20.617	5	2	Median	0.9134	0.72146	NaN	1	0	Median	0.8544	1.0344	NaN	1	0	Median	0.82343	0.78602	NaN	1	1	Median	0.68645	0.68246	22.16	2	1	Median	714460000	406840000	307620000	167000000	80371000	86625000	88593000	46132000	42461000	186770000	118410000	68358000	272090000	161920000	110170000	20901	5066	19783	128420;128421;128422;128423;128424	174110;174111;174112;174113;174114	174113			5	
GSGSGFKPFK	2	Acetyl (K)	1052.5291	0.52909508	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.916						1	2	4	2	1	5	2	1	49.45	39.258	2	4.9605E-19	23213	160513_QHF_FH_JSI11Kac_4	168.8	143.87			0.2722	0.32421	79.465	7	6	Median	0.43557	0.36578	NaN	1	1	Median	0.18684	0.32175	43.39	3	3	Plateau	0.47385	0.46824	95.702	2	1	Median	1.4169	1.5279	NaN	1	1	Median	454240000	348720000	105520000	42976000	29060000	13916000	241260000	209280000	31983000	163530000	107350000	56181000	6480900	3036500	3444400	20902	5066	19783	128425;128426;128427;128428;128429;128430;128431;128432;128433	174115;174116;174117;174118;174119;174120;174121;174122;174123;174124	174117	3304		10	
GSGSQSSVPSVDQFTGVGIR	0	Unmodified	1963.9599	0.95993268	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								3	1	1	1	67.947	67.299	2	1.1305E-32	60861	160511_QHF_FH_JSI10i_1	184.76	176.66			1.0697	1.0381	15.576	5	1	Median	1.179	1.0041	25.145	2	1	Median	0.78062	0.90246	NaN	1	0	Median	1.0697	1.0381	NaN	1	0	Median	1.1338	1.1666	NaN	1	0	Median	318820000	157380000	161440000	70925000	31436000	39489000	86293000	51079000	35214000	80935000	37138000	43797000	80671000	37727000	42944000	20903	5479	19784	128434;128435;128436;128437;128438;128439	174125;174126;174127;174128;174129;174130;174131;174132;174133;174134;174135	174130			11	
GSGTAEVELK	1	Unmodified	989.50294	0.50293991	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	5.65	4	4	4		3	3	3	1		4	6	7	5	22.405	19.132	2	1.0368E-56	11940	160513_QHF_FH_JSI11Kac_3	228.05	172.04			0.98278	1.0343	13.211	19	3	Median	1.292	1.0739	10.441	4	1	Median	0.77078	0.92321	14.218	5	1	Median	0.98278	0.96378	13.978	5	1	Median	0.9868	1.0343	15.763	5	0	Median	10064000000	5114500000	4949800000	2465200000	1114100000	1351000000	3179100000	1689100000	1490000000	2189600000	1178900000	1010700000	2230500000	1132400000	1098100000	20904	1055	19785	128440;128441;128442;128443;128444;128445;128446;128447;128448;128449;128450;128451;128452;128453;128454;128455;128456;128457;128458;128459;128460;128461	174136;174137;174138;174139;174140;174141;174142;174143;174144;174145;174146;174147;174148;174149;174150;174151;174152;174153;174154;174155;174156;174157;174158;174159;174160;174161;174162;174163;174164;174165;174166;174167;174168;174169;174170;174171	174148			36	
GSGTAEVELKK	2	Unmodified	1117.5979	0.59790293	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.85	9	11	16				6	8	2	12	14	14	12	16.693	13.584	2;3	1.1457E-47	11578	160511_QHF_FH_JSI10i_1	215.06	184.5			0.99661	0.99956	64.889	50	23	Median	1.1403	0.93507	62.675	11	5	Median	0.85176	1.0298	66.352	13	5	Median	1.0138	0.99951	75.6	14	8	Median	0.99106	1.0613	53.98	12	5	Median	33406000000	17313000000	16093000000	3502500000	1642000000	1860600000	5609600000	2955600000	2654000000	11942000000	6784500000	5157400000	12352000000	5931300000	6420900000	20905	1055	19786	128462;128463;128464;128465;128466;128467;128468;128469;128470;128471;128472;128473;128474;128475;128476;128477;128478;128479;128480;128481;128482;128483;128484;128485;128486;128487;128488;128489;128490;128491;128492;128493;128494;128495;128496;128497;128498;128499;128500;128501;128502;128503;128504;128505;128506;128507;128508;128509;128510;128511;128512;128513	174172;174173;174174;174175;174176;174177;174178;174179;174180;174181;174182;174183;174184;174185;174186;174187;174188;174189;174190;174191;174192;174193;174194;174195;174196;174197;174198;174199;174200;174201;174202;174203;174204;174205;174206;174207;174208;174209;174210;174211;174212;174213;174214;174215;174216;174217;174218;174219;174220;174221;174222;174223;174224;174225;174226;174227;174228;174229;174230;174231;174232;174233;174234;174235;174236;174237;174238;174239;174240;174241;174242;174243;174244;174245;174246;174247;174248;174249;174250;174251;174252;174253;174254;174255;174256	174203			85	
GSGTASDDEFENLR	0	Unmodified	1496.6379	0.63792984	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.299	36.687	2	1.6872E-40	32771	160511_QHF_FH_JSI10i_1	208.74	154.33			1.055	1.0688	3.6701	4	0	Median	1.3601	1.1319	NaN	1	0	Median	0.88123	1.0468	NaN	1	0	Median	1.0998	1.0882	NaN	1	0	Median	1.012	1.0497	NaN	1	0	Median	464920000	220790000	244130000	116510000	45169000	71339000	132980000	71440000	61539000	112490000	52504000	59989000	102940000	51679000	51260000	20906	3290	19787	128514;128515;128516;128517	174257;174258;174259;174260;174261;174262;174263	174261			7	
GSGVHGGLMVLEPR	0	Unmodified	1407.7293	0.72926823	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	45.884	45.763	3	3.8254E-05	40343	160511_QHF_FH_JSI11i_3	83.633	75.529			1.2602	1.22	14.288	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4717	1.3497	NaN	1	0	Median	1.0791	1.1028	NaN	1	0	Median	138100000	66094000	72007000	0	0	0	0	0	0	69655000	22072000	47583000	68447000	44023000	24424000	20907	3353	19788	128518;128519	174264;174265;174266;174267	174266			4	
GSGVTTYSVHPGTVQSELVR	0	Unmodified	2073.0491	0.049082043	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	51.276	50.585	3	1.6218E-25	44575	160511_QHF_FH_JSI10i_2	177	168.78			0.96524	0.98705	11.978	6	1	Median	1.4336	1.2482	NaN	1	0	Median	0.82362	1.0097	NaN	1	0	Median	1.0344	1.0087	6.2701	2	1	Median	0.84329	0.90913	2.8623	2	0	Median	767610000	379110000	388500000	123730000	53958000	69773000	131060000	69715000	61347000	271410000	127650000	143760000	241400000	127780000	113620000	20908	3700	19789	128520;128521;128522;128523;128524;128525	174268;174269;174270;174271;174272;174273;174274;174275;174276	174275			9	
GSGWTVIYR	0	Unmodified	1037.5294	0.52942943	5203	Q9P273	TENM3	Teneurin-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			57.715	49.231	2	5.24E-05	27109	160513_QHF_FH_JSI10Kac_6	120.87	107.09			0.8652	0.99998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8652	0.99998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12081000	6024500	6056300	0	0	0	12081000	6024500	6056300	0	0	0	0	0	0	20909	5203	19790	128526	174277	174277			1	
GSHQISLDNPDYQQDFFPK	1	Unmodified	2235.0233	0.023261223	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	68.471	67.825	3	2.7344E-14	59498	160511_QHF_FH_JSI11i_2	143.46	140.45			1.0097	1.0569	29.196	6	2	Median	1.0198	0.86313	NaN	1	0	Median	0.90011	1.0956	NaN	1	0	Median	1.2628	1.2299	26.533	2	1	Median	0.97145	1.0374	51.814	2	1	Median	540000000	234850000	305150000	54381000	25669000	28712000	72856000	35282000	37573000	192780000	74475000	118310000	219980000	99420000	120550000	20910	774	19791	128527;128528;128529;128530;128531;128532	174278;174279;174280;174281;174282;174283	174282			6	
GSHVLSCMVK	1	Unmodified	1116.542	0.54198473	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			24.182	22.926	2	0.0087931	18869	160511_QHF_FH_JSI10i_3	50.805	43.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20911	5330	19792	128533	174284	174284			1	
GSIDEVDK	1	Unmodified	861.40798	0.40797689	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	15.677	12.974	2	4.1246E-05	11348	160511_QHF_FH_JSI12i_1	136.8	99.151			0.89531	0.83174	26.65	6	1	Median	0.91611	0.75789	NaN	1	0	Median	1.2101	1.4356	NaN	1	1	Median	0.89133	0.87311	24.912	2	0	Median	0.76375	0.81643	15.779	2	0	Median	1744200000	849360000	894800000	365650000	180270000	185390000	474360000	213610000	260750000	427660000	201170000	226500000	476480000	254310000	222170000	20912	5441	19793	128534;128535;128536;128537;128538;128539;128540	174285;174286;174287;174288;174289;174290;174291;174292	174286			8	
GSIDEVDKR	1	Unmodified	1017.5091	0.50908792	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	11.521	10.872	2	0.0011638	8639	160511_QHF_FH_JSI9i_2	87.639	62.717			2.0739	1.9937	30.606	2	2	Median	1.8303	1.6058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3499	2.4755	NaN	1	1	Median	31239000	8001700	23237000	17249000	3806200	13442000	0	0	0	0	0	0	13990000	4195500	9794800	20913	5441	19794	128541;128542	174293;174294	174294			2	
GSIDEVDKR	1	Acetyl (K)	1059.5197	0.51965261	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		29.573	21.044	2	0.0022788	12993	160513_QHF_FH_JSI11Kac_3	101.65	61.378			0.28613	0.28739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28613	0.28739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5520800	4030900	1489900	0	0	0	0	0	0	5520800	4030900	1489900	0	0	0	20914	5441	19794	128543	174295	174295	3426		1	
GSIDREDGSLQGPIGNQHIYQPVGKPDPAAPPK	2	Unmodified	3437.7328	0.73278029	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				55.479	53.913	5	0.020686	44337	160511_QHF_FH_JSI9i_3	28.905	27.024			1.6575	1.3502	NaN	1	1	Median	1.6575	1.3502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27101000	5640900	21460000	27101000	5640900	21460000	0	0	0	0	0	0	0	0	0	20915	2229	19795	128544	174296;174297	174297			2	
GSIFVVFDSIESAK	1	Unmodified	1497.7715	0.7715102	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	97.635	94.794	2	1.5089E-55	45929	160513_QHF_FH_JSI11Kac_6	208.74	183.51			0.9099	0.93385	14.272	12	0	Median	0.9258	0.78693	13.592	3	0	Plateau	0.7701	0.85794	12.775	3	0	Median	0.92331	0.94787	13.359	3	0	Plateau	0.89187	0.99084	18.051	3	0	Median	4108500000	2177900000	1930600000	749690000	382750000	366940000	943470000	526290000	417170000	1290900000	673620000	617320000	1124400000	595230000	529140000	20916	840	19796	128545;128546;128547;128548;128549;128550;128551;128552;128553;128554;128555;128556	174298;174299;174300;174301;174302;174303;174304;174305;174306;174307;174308;174309;174310;174311;174312;174313;174314;174315;174316;174317;174318;174319;174320	174304			23	
GSIFVVFDSIESAKK	2	Unmodified	1625.8665	0.86647322	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	3	2	3	87.142	82.598	2;3	4.102E-24	43564	160513_QHF_FH_JSI10Kac_6	190.78	169.39			0.80457	0.87136	17.851	9	2	Median	1.0586	0.88517	2.2235	2	0	Median	0.80457	0.94644	6.9347	3	0	Plateau	0.8118	0.75659	21.989	2	1	Median	0.79584	0.81932	40.368	2	1	Median	907170000	477080000	430090000	211550000	102610000	108940000	331960000	185010000	146950000	136540000	64253000	72288000	227110000	125210000	101900000	20917	840	19797	128557;128558;128559;128560;128561;128562;128563;128564;128565;128566	174321;174322;174323;174324;174325;174326;174327;174328;174329;174330;174331;174332;174333;174334;174335;174336;174337	174337			17	
GSIGPTVLEVFNTLLK	1	Unmodified	1686.9556	0.95562257	2504	Q14156	EFR3A	Protein EFR3 homolog A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.03	103.04	2	2.5188E-65	89786	160511_QHF_FH_JSI12i_3	229.97	196.74			0.8513	0.85706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8513	0.85706	NaN	1	0	Median	51873000	26131000	25742000	0	0	0	0	0	0	0	0	0	51873000	26131000	25742000	20918	2504	19798	128567	174338;174339	174338			2	
GSIHDFPGFDPNQDAEALYTAMK	1	Unmodified	2523.1376	0.13763905	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	97.039	96.789	3	2.0208E-11	85737	160511_QHF_FH_JSI10i_2	106.63	105.48			0.84804	0.86727	19.204	5	0	Median	0.99258	0.86727	NaN	1	0	Median	0.67268	0.83773	NaN	1	0	Median	1.0162	1.0112	34.308	2	0	Median	0.84804	0.92889	NaN	1	0	Median	369000000	204210000	164790000	104540000	57091000	47451000	67879000	38156000	29723000	116490000	58698000	57789000	80092000	50267000	29826000	20919	891	19799	128568;128569;128570;128571;128572	174340;174341;174342;174343;174344	174344			3	
GSIINISSIVGK	1	Unmodified	1186.6921	0.69213767	3831	Q92506	HSD17B8	Estradiol 17-beta-dehydrogenase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.852	78.102	2	1.2462E-07	67796	160511_QHF_FH_JSI12i_3	136.02	67.288			1.0946	1.1051	9.4409	4	0	Linear	1.1521	0.93045	NaN	1	0	Median	0.77873	0.8834	NaN	1	0	Median	1.1164	1.0384	NaN	1	0	Median	1.0733	1.0826	NaN	1	0	Median	175650000	81834000	93813000	25251000	9920600	15330000	23350000	14124000	9226000	46740000	19412000	27328000	80305000	38376000	41929000	20920	3831	19800	128573;128574;128575;128576	174345;174346;174347;174348	174348			3	
GSIPEFFHIMK	1	Unmodified	1304.6587	0.65872905	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	78.792	78.009	3	3.6287E-06	69513	160511_QHF_FH_JSI11i_3	88.596	84.742			0.94079	0.93463	12.86	8	0	Median	1.1591	0.99064	7.6047	2	0	Median	0.77897	0.92684	12.34	2	0	Median	0.92085	0.88863	6.5122	2	0	Median	0.88219	0.91925	27.946	2	0	Median	606090000	316190000	289900000	64354000	33816000	30538000	103100000	62547000	40551000	159410000	83753000	75655000	279240000	136080000	143160000	20921	4959	19801	128577;128578;128579;128580;128581;128582;128583;128584	174349;174350;174351;174352;174353;174354;174355;174356;174357;174358;174359;174360;174361;174362;174363;174364;174365;174366;174367;174368;174369	174351			21	
GSISSGLEFVSHNPPSEAATPPVAR	0	Unmodified	2506.2452	0.24521567	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.848	65.701	3	2.4395E-24	58445	160511_QHF_FH_JSI11i_3	141.53	128.86			1.0018	0.9829	23.249	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89262	0.8339	NaN	1	0	Median	1.1244	1.1585	NaN	1	0	Median	74069000	38347000	35723000	0	0	0	0	0	0	50574000	26579000	23994000	23496000	11767000	11728000	20922	4302	19802	128585;128586	174370;174371;174372;174373	174370			4	
GSISVFEVDGKK	2	Unmodified	1264.6663	0.66631685	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.126	43.01	3	1.5914E-05	36722	160511_QHF_FH_JSI12i_3	79.089	64.643			1.3339	1.3046	18.734	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.216	1.1428	NaN	1	0	Median	1.4631	1.4894	NaN	1	0	Median	167000000	85363000	81641000	0	0	0	0	0	0	58235000	20557000	37678000	108770000	64805000	43963000	20923	666	19803	128587;128588	174374;174375;174376	174376			3	
GSITISAEEIK	1	Unmodified	1146.6132	0.61321864	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	3	1	1	47.789	46.887	2	9.994E-06	41057	160511_QHF_FH_JSI9i_2	110.53	80.367			1.1123	1.1173	35.144	6	6	Median	0.88831	0.78144	27.169	2	2	Median	0.97278	1.1671	37.186	2	2	Median	1.6179	1.5818	NaN	1	1	Median	1.174	1.3182	NaN	1	1	Median	399780000	205660000	194120000	103940000	51966000	51973000	197190000	116350000	80839000	48952000	16999000	31953000	49699000	20349000	29349000	20924	479	19804	128589;128590;128591;128592;128593;128594;128595;128596	174377;174378;174379;174380;174381;174382;174383;174384;174385	174382			9	
GSITQGTPALPQTGIPTEALVK	1	Unmodified	2178.1896	0.18959827	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			82.253	81.752	3	0.00026171	72737	160511_QHF_FH_JSI9i_1	48.182	42.338			0.6592	0.63351	31.897	2	1	Median	0.62085	0.50559	NaN	1	0	Median	0.69992	0.79379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27401000	19768000	7633200	13800000	8699100	5101400	13600000	11069000	2531800	0	0	0	0	0	0	20925	513	19805	128597;128598;128599	174386;174387;174388;174389	174388			4	
GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR	0	Unmodified	3713.8788	0.8788354	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	4.8	5.64	1	2	1						1	1	3		1	99.546	97.749	3;4	8.3301E-62	91897	160511_QHF_FH_JSI10i_1	169.96	165.52			0.85242	1.0392	10.623	4	0	Median	NaN	NaN	NaN	0	0	Median	0.76577	0.93722	7.7331	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2014	1.1911	NaN	1	0	Median	1487900000	794920000	693020000	64314000	33461000	30853000	1085700000	610290000	475440000	0	0	0	337900000	151170000	186730000	20926	851	19806	128600;128601;128602;128603;128604	174390;174391;174392	174390			2	
GSIVWQEVFDDK	1	Unmodified	1421.6827	0.68269519	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	81.119	80.66	2	8.5418E-16	71986	160511_QHF_FH_JSI11i_3	158.05	141.38			0.90704	0.88868	20.553	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94346	0.89821	NaN	1	0	Median	0.99459	1.0564	25.872	2	1	Median	585130000	292300000	292830000	0	0	0	0	0	0	230870000	108040000	122830000	354260000	184250000	170010000	20927	874	19807	128605;128606;128607	174393;174394;174395	174393			3	
GSKDHNIR	1	Acetyl (K)	967.48354	0.48354187	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		6.4115	-3.1121	2	0.00032883	2213	160513_QHF_FH_JSI11Kac_5	118.18	86.242			0.36137	0.35097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36137	0.35097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6251700	4447400	1804200	0	0	0	0	0	0	6251700	4447400	1804200	0	0	0	20928	2094	19808	128608	174396	174396	2194		1	
GSKKAVTKAQK	4	3 Acetyl (K)	1270.7245	0.72450043	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	28.411	20.657	2	0.0032568	11914	160513_QHF_FH_JSI10Kac_3	72.34	46.903			1.6506	1.7703	91.959	4	0	Median	NaN	NaN	NaN	0	0	Median	3.6202	4.2988	42.419	2	0	Median	1.0108	0.98406	NaN	1	0	Median	0.80754	0.87521	NaN	1	0	Median	25487000	9551300	15935000	0	0	0	15821000	3721800	12099000	4160600	1998800	2161900	5504900	3830700	1674200	20929	1235;1902	19809	128609;128610;128611;128612;128613	174397;174398;174399;174400;174401	174400	1114;1115;1117;1118		4	
GSKPGGVGTGLGGSSGTETLEK	2	Unmodified	1974.9858	0.98581308	3046	Q6GQQ9	OTUD7B	OTU domain-containing protein 7B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	32.198	31.809	3	3.3055E-13	27568	160511_QHF_FH_JSI11i_3	118.36	102.73			0.85682	0.89439	30.112	4	3	Median	NaN	NaN	NaN	0	0	Median	0.47264	0.55773	NaN	1	1	Median	1.174	1.1412	NaN	1	0	Median	0.85682	0.89439	5.1502	2	2	Median	117900000	69184000	48712000	0	0	0	26305000	18528000	7776900	63258000	28857000	34401000	28334000	21800000	6534300	20930	3046	19810	128614;128615;128616;128617	174402;174403;174404;174405;174406	174402			5	
GSLAADK	1	Unmodified	660.34425	0.34425443	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.8545	5.5084	2	0.014813	3540	160511_QHF_FH_JSI12i_1	65.313	18.942			0.82219	0.86907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82219	0.86907	NaN	1	1	Median	435780000	257040000	178740000	0	0	0	0	0	0	0	0	0	435780000	257040000	178740000	20931	1747	19811	128618	174407	174407			1	
GSLAADKVVEEIR	1	Acetyl (K)	1427.762	0.76200815	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			74.24	63.647	2	1.4749E-16	33927	160513_QHF_FH_JSI10Kac_4	142.83	106.41			0.70759	0.82928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70759	0.82928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11904000	6749400	5155000	0	0	0	11904000	6749400	5155000	0	0	0	0	0	0	20932	1747	19812	128619	174408	174408	1764		1	
GSLAAVAHAQSLVEAQPNVDK	1	Unmodified	2104.0913	0.091281208	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.11		2	7						2	2	4	3	2	61.722	59.505	3;4	6.5601E-58	52691	160511_QHF_FH_JSI11i_3	219.22	202.92			0.85446	0.87577	17.644	11	5	Median	1.1951	0.98634	19.906	2	1	Median	0.84789	0.99895	20.643	4	1	Linear	1.0132	0.95048	6.2354	3	1	Plateau	0.82678	0.82455	27.275	2	2	Median	1478000000	758090000	719950000	213340000	97399000	115940000	543090000	243310000	299790000	475410000	284390000	191020000	246200000	133000000	113200000	20933	2185	19813	128620;128621;128622;128623;128624;128625;128626;128627;128628;128629;128630	174409;174410;174411;174412;174413;174414;174415;174416;174417;174418;174419;174420;174421;174422;174423	174409			14	
GSLAEAVGSPPPAATPTPTPPTRK	1	Unmodified	2299.2172	0.21721	5727	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			51.802	50.224	3	4.2282E-12	41104	160511_QHF_FH_JSI9i_3	108.25	99.759			1.2254	1.1744	21.769	2	2	Median	1.2185	1.0069	NaN	1	1	Median	1.2323	1.3699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42725000	20527000	22198000	21878000	10262000	11615000	20848000	10265000	10583000	0	0	0	0	0	0	20934	5727	19814	128631;128632	174424;174425;174426	174426			3	
GSLANHTSIAELIK	1	Unmodified	1452.7936	0.79364262	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	55.952	55.181	2;3	3.1007E-05	46513	160511_QHF_FH_JSI10i_3	80.979	65.714			0.65742	0.68044	18.961	2	2	Median	NaN	NaN	NaN	0	0	Median	0.67549	0.77807	NaN	1	1	Median	0.63983	0.59507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133660000	92794000	40867000	0	0	0	113640000	81534000	32108000	20018000	11260000	8759000	0	0	0	20935	3972	19815	128633;128634;128635;128636	174427;174428;174429;174430;174431	174430			5	
GSLASLDSLRK	1	Unmodified	1145.6404	0.64043645	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.78	0.416		2	7							3	3	2	1	40.921	39.996	2;3	1.9172E-14	33342	160511_QHF_FH_JSI10i_3	136.81	115.77			0.87044	0.79153	11.239	9	1	Median	1.0772	0.9095	10.561	3	0	Median	0.61614	0.70005	7.6239	3	1	Median	0.86907	0.81044	9.503	2	0	Median	0.87044	0.83957	NaN	1	0	Median	728790000	405480000	323310000	297000000	159660000	137340000	212620000	102120000	110500000	188220000	122930000	65292000	30944000	20774000	10170000	20936	442	19816	128637;128638;128639;128640;128641;128642;128643;128644;128645	174432;174433;174434;174435;174436;174437;174438;174439;174440;174441;174442	174436			10	
GSLDQDRR	0	Unmodified	945.46281	0.46280643	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		4.8973	4.7031	2	6.3699E-09	2457	160511_QHF_FH_JSI11i_2	136.27	72.789			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20937	1629	19817	128646	174443	174443			1	
GSLDYRPLTTADPIDEHR	0	Unmodified	2055.0021	0.0021318501	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			3									2	1	53.106	53.027	3;4	2.8586E-07	46938	160511_QHF_FH_JSI11i_3	105.39	88.311			0.91871	0.8678	6.1744	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99826	0.9203	8.3069	2	1	Median	0.78366	0.89046	NaN	1	0	Median	243670000	130690000	112990000	0	0	0	0	0	0	172010000	92785000	79225000	71663000	37902000	33761000	20938	95	19818	128647;128648;128649	174444;174445	174444			2	
GSLEEEK	1	Unmodified	790.37086	0.37086311	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		8.0551	0.7379	2	0.011149	3208	160513_QHF_FH_JSI11Kac_3	81.191	49.255			0.73439	0.71015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73439	0.71015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4276300	2187500	2088800	0	0	0	0	0	0	4276300	2187500	2088800	0	0	0	20939	2587	19819	128650	174446	174446			1	
GSLEKGSPEDK	2	Acetyl (K)	1187.567	0.56699673	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		23.647	16.152	2	0.0011007	10315	160513_QHF_FH_JSI11Kac_3	85.958	53.638			1.2238	1.2802	312.82	2	2	Median	NaN	NaN	NaN	0	0	Median	10.627	11.694	NaN	1	1	Median	0.14094	0.14016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1786900	1193200	593740	0	0	0	588600	63563	525030	1198300	1129600	68703	0	0	0	20940	957	19820	128651;128652	174447;174448	174447	725		2	
GSLENVLDSK	1	Unmodified	1060.5401	0.5400537	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.352	44.707	2	0.001644	40630	160511_QHF_FH_JSI12i_1	68.836	49.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20941	1501	19821	128653	174449	174449			1	
GSLESPATDVFGSTEEGEK	1	Unmodified	1938.8694	0.86944592	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	60.206	59.562	2;3	2.0312E-119	53896	160511_QHF_FH_JSI11i_1	281.51	271.08			1.0136	1.0336	9.2074	8	3	Median	1.1734	0.96752	8.1474	2	1	Median	0.94991	1.1173	9.8137	2	1	Median	1.0313	1.0002	10.132	2	1	Median	0.95021	1.0175	9.9865	2	0	Median	1677700000	817190000	860560000	371820000	176040000	195780000	484540000	244810000	239730000	439160000	203650000	235500000	382240000	192690000	189550000	20942	110	19822	128654;128655;128656;128657;128658;128659;128660;128661	174450;174451;174452;174453;174454;174455;174456;174457;174458;174459;174460;174461;174462;174463;174464;174465;174466;174467;174468	174451			19	
GSLEVLNLK	1	Unmodified	971.56515	0.56514624	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.64	2	2					1	3		2	2	2	2	64.698	58.254	2	2.8734E-12	31440	160513_QHF_FH_JSI11Kac_5	160.75	75.682			0.7903	0.81469	20.898	7	1	Median	0.99573	0.84388	NaN	1	0	Median	0.66922	0.79693	14.478	2	1	Median	0.81185	0.79172	4.0443	2	0	Median	0.80241	0.86399	47.862	2	0	Median	519580000	315810000	203760000	10869000	5411900	5457300	402590000	241150000	161440000	22820000	13079000	9740900	83295000	56169000	27126000	20943	5569	19823	128662;128663;128664;128665;128666;128667;128668;128669	174469;174470;174471;174472;174473;174474	174472			6	
GSLFGGSVK	1	Unmodified	850.45487	0.45486751	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							3	1	2	1	33.325	32.597	2	9.0679E-07	27479	160511_QHF_FH_JSI12i_3	135.83	113.7			1.1794	1.1321	10.234	6	1	Median	1.3062	1.0855	14.3	2	1	Median	0.89387	1.0034	NaN	1	0	Median	1.1794	1.1321	5.8237	2	0	Median	1.2473	1.2629	NaN	1	0	Median	1438100000	681710000	756420000	183160000	79614000	103540000	140100000	75404000	64695000	487220000	234030000	253190000	627660000	292660000	334990000	20944	3766	19824	128670;128671;128672;128673;128674;128675;128676	174475;174476;174477;174478;174479;174480;174481	174481			7	
GSLGATGEIK	1	Unmodified	931.49746	0.4974606	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.83	4	3				2	2			2	3	3	3	24.009	20.313	2	2.0091E-10	12941	160513_QHF_FH_JSI11Kac_4	135.71	56.243			0.89286	0.88734	21.956	10	5	Median	0.95095	0.7847	24.349	2	1	Median	0.71515	0.8447	21.981	3	2	Median	0.86302	0.84294	27.863	3	1	Median	0.97039	1.0327	4.7343	2	1	Median	1041700000	510990000	530670000	281490000	131560000	149930000	228660000	128230000	100430000	330030000	156560000	173470000	201480000	94630000	106850000	20945	2286	19825	128677;128678;128679;128680;128681;128682;128683;128684;128685;128686;128687	174482;174483;174484;174485;174486;174487;174488;174489;174490;174491;174492;174493;174494;174495;174496	174490			15	
GSLGGGFSSGGFSGGSFSR	0	Unmodified	1706.7649	0.76486169	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				3	0			1							1				60.768	59.244	2	4.7756E-10	48603	160511_QHF_FH_JSI9i_3	121.28	101.52		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9322800	9322800	0	9322800	9322800	0	0	0	0	0	0	0	0	0	0	20946	56	19826	128688	174497	174497			1	
GSLGQGTAPVLPGK	1	Unmodified	1280.7089	0.70885036	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	3.72	6	2				1				2	2	1	4	44.802	43.051	2;3	1.0187E-29	38632	160511_QHF_FH_JSI11i_1	186.36	162.14			1.077	1.0689	10.51	8	2	Median	1.1399	0.92748	NaN	1	0	Median	0.85751	1.0279	5.4781	2	0	Median	1.0991	1.0693	NaN	1	0	Median	1.0866	1.1786	8.3948	4	2	Median	1305600000	608950000	696600000	182920000	81822000	101100000	232650000	119100000	113550000	295890000	133150000	162740000	594100000	274890000	319210000	20947	2409	19827	128689;128690;128691;128692;128693;128694;128695;128696;128697	174498;174499;174500;174501;174502;174503;174504;174505;174506;174507;174508;174509	174499			12	
GSLGSQGAK	1	Unmodified	803.41373	0.41373097	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	5.5156	3.7359	2	0.00034658	3123	160511_QHF_FH_JSI10i_1	82.426	44.78			0.95892	1.1413	52.975	5	3	Median	0.95892	0.78352	NaN	1	0	Median	0.95532	1.1413	NaN	1	0	Median	0.858	0.83972	78.585	2	2	Median	1.759	1.8393	NaN	1	1	Median	551690000	250240000	301450000	129830000	64667000	65163000	130510000	64798000	65709000	170880000	67768000	103110000	120470000	53008000	67465000	20948	2409	19828	128698;128699;128700;128701;128702	174510;174511;174512;174513	174512			4	
GSLGSQGAKDEPEEELQK	2	Unmodified	1900.9014	0.90141475	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	1	2	28.79	28.13	2;3	5.9222E-24	24895	160511_QHF_FH_JSI11i_1	170.16	155.89			1.0504	0.94404	18.87	6	0	Median	1.0504	0.89252	1.3181	2	0	Median	0.73595	0.86726	NaN	1	0	Median	1.0026	0.98927	NaN	1	0	Median	1.2218	1.2603	16.024	2	0	Median	458350000	220410000	237940000	102250000	47036000	55216000	109000000	54640000	54363000	94058000	44746000	49312000	153040000	73983000	79053000	20949	2409	19829	128703;128704;128705;128706;128707;128708	174514;174515;174516;174517;174518;174519	174514			6	
GSLLDFLK	1	Unmodified	891.50657	0.50656873	885;884;845	P06241;P07947;P07948	FYN;YES1;LYN	Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Lyn	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	2	2	3	92.879	92.387	2	8.4844E-07	81218	160511_QHF_FH_JSI11i_2	151.27	93.71			1.022	1.0121	5.0503	8	0	Median	1.2495	1.0379	0.12431	2	0	Median	0.88027	1.0327	6.9446	2	0	Median	1.022	0.98519	0.37496	2	0	Median	0.97797	1.0425	9.4282	2	0	Median	537800000	269270000	268530000	79169000	36431000	42738000	104520000	52490000	52033000	208150000	106280000	101870000	145960000	74069000	71891000	20950	845;884;885	19830	128709;128710;128711;128712;128713;128714;128715;128716;128717	174520;174521;174522;174523;174524;174525;174526;174527;174528;174529;174530;174531;174532;174533;174534;174535;174536;174537;174538;174539;174540;174541;174542;174543;174544;174545	174537			26	
GSLLFTAGPLEEER	0	Unmodified	1517.7726	0.77257283	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		6	3					3		2	4	4	2	77.789	73.893	2	2.7143E-52	66517	160511_QHF_FH_JSI11i_2	191.33	138.54			0.86688	0.88226	11.234	9	4	Median	1.0054	0.84731	15.99	2	1	Median	0.67919	0.83049	15.558	2	1	Median	0.92266	0.90119	14.321	3	1	Median	0.80682	0.85647	4.1953	2	1	Median	758460000	387990000	370460000	110250000	46842000	63403000	106080000	58265000	47816000	303930000	142980000	160950000	238200000	139900000	98293000	20951	1791	19831	128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729	174546;174547;174548;174549;174550;174551;174552;174553;174554;174555;174556;174557;174558;174559;174560;174561	174553			16	
GSLLGDFLTAYHGLEK	1	Unmodified	1719.8832	0.88318591	4389	Q9BRZ2	TRIM56	E3 ubiquitin-protein ligase TRIM56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.07	100.98	3	1.3081E-15	87607	160511_QHF_FH_JSI12i_3	157.8	132.48			0.90767	0.82966	7.8734	4	0	Median	0.95414	0.77798	NaN	1	0	Median	0.65874	0.7766	NaN	1	0	Median	0.97004	0.88477	NaN	1	0	Median	0.86347	0.89642	NaN	1	0	Median	288640000	149650000	138990000	47413000	25958000	21455000	54237000	33469000	20768000	71088000	35789000	35299000	115900000	54433000	61467000	20952	4389	19832	128730;128731;128732;128733	174562;174563;174564;174565;174566;174567;174568	174567			7	
GSLLHLTLPK	1	Unmodified	1077.6546	0.65462995	633	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.675	60.85	3	5.3932E-05	50130	160511_QHF_FH_JSI9i_3	81.017	68.44			1.0589	1.0507	5.8842	4	0	Median	1.3694	1.1086	NaN	1	0	Median	0.8966	1.0189	NaN	1	0	Median	1.1596	1.0835	NaN	1	0	Median	0.96691	0.97402	NaN	1	0	Median	220460000	112170000	108290000	36990000	14295000	22695000	34454000	21903000	12551000	46605000	22482000	24123000	102410000	53489000	48926000	20953	633	19833	128734;128735;128736;128737	174569;174570;174571;174572;174573;174574;174575;174576;174577	174574			9	
GSLLIDSSTIDPAVSK	1	Unmodified	1601.8512	0.85121708	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	71.322	70.79	2;3	4.9345E-15	64377	160511_QHF_FH_JSI11i_1	159.08	100.41			0.89962	0.93802	15.346	8	2	Median	1.0028	0.84325	15.094	2	1	Median	0.82386	0.96214	3.6223	2	1	Median	0.85884	0.83141	6.1042	2	0	Median	1.0713	1.0977	18.837	2	0	Median	827040000	443360000	383680000	189690000	98438000	91253000	251100000	145170000	105930000	221210000	118520000	102680000	165040000	81225000	83817000	20954	1380	19834	128738;128739;128740;128741;128742;128743;128744;128745	174578;174579;174580;174581;174582;174583;174584;174585;174586	174578			9	
GSLLLGGLDAEASR	0	Unmodified	1357.7201	0.72014333	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS		By matching	2.5	0.5		1	1								1		1	68.23	67.673	2	0.021233	60038	160511_QHF_FH_JSI10i_2	65.563	53.969			0.9881	1.1288	54.451	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63217	0.76811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5444	1.659	NaN	1	0	Median	102840000	52425000	50411000	0	0	0	55114000	31642000	23472000	0	0	0	47721000	20783000	26939000	20955	3146	19835	128746;128747	174587	174587			0	
GSLLQQSL	0	Unmodified	844.46543	0.46543219	219	O14925	TIMM23	Mitochondrial import inner membrane translocase subunit Tim23	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					1	2	2	3	59.057	57.365	1;2	8.038E-05	51903	160511_QHF_FH_JSI11i_1	134.08	91.169			0.81694	0.88116	16.465	8	0	Median	1.236	1.0057	NaN	1	0	Median	0.73368	0.87191	12.758	2	0	Median	0.9356	0.88676	16.97	2	0	Median	0.79008	0.80793	25.232	3	0	Plateau	414790000	214710000	200080000	55114000	25318000	29796000	104720000	55402000	49314000	130290000	63395000	66895000	124670000	70597000	54071000	20956	219	19836	128748;128749;128750;128751;128752;128753;128754;128755	174588;174589;174590;174591;174592;174593	174588			3	
GSLLSEADVR	0	Unmodified	1045.5404	0.54038805	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	42.612	41.399	2	0.00097947	35527	160511_QHF_FH_JSI12i_2	80.688	57.948			0.95717	0.93905	28.651	2	2	Median	0.8757	0.76684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0462	1.1499	NaN	1	1	Median	45913000	24511000	21401000	18531000	9519200	9011400	0	0	0	0	0	0	27382000	14992000	12390000	20957	2404	19837	128756;128757;128758;128759;128760	174594;174595;174596;174597;174598	174594			5	
GSLLTLQR	0	Unmodified	886.52362	0.52361577	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.09		2	5					1		4	2	1	1	43.697	41.137	2	8.4367E-07	35004	160511_QHF_FH_JSI12i_3	151.29	86.535			0.96127	1.0084	18.386	6	2	Linear	1.511	1.2842	23.022	3	2	Median	0.87807	1.0247	NaN	1	0	Median	1.0294	0.99229	NaN	1	0	Median	0.90552	0.92565	NaN	1	0	Median	1221100000	591070000	629980000	374310000	148430000	225880000	312880000	174950000	137930000	237300000	110980000	126310000	296570000	156710000	139860000	20958	2307	19838	128761;128762;128763;128764;128765;128766;128767;128768	174599;174600;174601;174602;174603;174604;174605;174606;174607;174608;174609;174610	174609			12	
GSLLVAR	0	Unmodified	714.43882	0.43882351	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	4.8			4					1		2	1	1	1	26.116	23.696	2	0.00142	19727	160511_QHF_FH_JSI12i_3	120.9	22.483			1.0979	1.0163	28.489	5	0	Median	1.5202	1.2564	29.984	2	0	Median	1.0979	1.2813	NaN	1	0	Median	0.99493	0.92515	NaN	1	0	Median	0.73917	0.74658	NaN	1	0	Median	386620000	197150000	189470000	40958000	18616000	22342000	62841000	30909000	31932000	111320000	52546000	58775000	171500000	95084000	76417000	20959	2721	19839	128769;128770;128771;128772;128773	174611;174612;174613;174614;174615	174615			5	
GSLLWVLDHTK	1	Unmodified	1267.6925	0.69247202	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	1	3	2	2	77.662	72.466	3	1.5798E-05	37265	160513_QHF_FH_JSI12Kac_6	105.2	88.826			0.91562	0.92789	50.705	6	2	Median	NaN	NaN	NaN	0	0	Median	0.80491	0.95455	110.13	2	2	Median	1.1022	1.0706	16.716	2	0	Median	0.83097	0.87253	5.1813	2	0	Median	247420000	119690000	127730000	0	0	0	77373000	34253000	43121000	82651000	44670000	37981000	87392000	40765000	46627000	20960	1176	19840	128774;128775;128776;128777;128778;128779;128780;128781	174616;174617;174618;174619;174620;174621;174622;174623	174621			8	
GSLPANVPTPR	0	Unmodified	1107.6037	0.60365701	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			2	4	2	1	39.703	39.075	2	4.6951E-05	34984	160511_QHF_FH_JSI10i_1	96.009	61.756			0.90293	0.95955	7.009	6	2	Median	1.2247	1.0661	NaN	1	1	Median	0.83032	0.96783	10.068	2	1	Median	0.91568	0.92281	1.1923	2	0	Median	0.92511	0.98938	NaN	1	0	Median	339000000	172300000	166700000	24358000	10508000	13850000	103450000	54790000	48657000	119490000	53769000	65720000	91708000	53231000	38476000	20961	1401	19841	128782;128783;128784;128785;128786;128787;128788;128789;128790	174624;174625;174626;174627;174628;174629;174630;174631;174632;174633	174627			10	
GSLPLSAHGIVVAWLSR	0	Unmodified	1761.989	0.98898839	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	87.304	78.663	2;3	1.2157E-128	45128	160513_QHF_FH_JSI10Kac_6	268.93	246.88			0.99432	0.93386	12.85	7	0	Median	1.0568	0.91257	1.1881	2	0	Median	0.81747	0.93386	NaN	1	0	Median	1.0851	1.0669	15.475	2	0	Median	0.81501	0.87054	17.17	2	0	Median	971460000	506680000	464780000	345820000	172100000	173720000	112710000	65829000	46877000	303210000	157010000	146210000	209720000	111750000	97973000	20962	5639	19842	128791;128792;128793;128794;128795;128796;128797	174634;174635;174636;174637;174638;174639	174639			6	
GSLPPHYALTVLNTTTAATLSNK	1	Unmodified	2369.2591	0.25907482	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	80.928	80.815	3	3.1654E-19	70340	160511_QHF_FH_JSI12i_3	121.21	106.59			0.90266	0.87604	58.214	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4133	1.3222	NaN	1	1	Median	0.57652	0.58044	NaN	1	0	Median	51238000	23815000	27423000	0	0	0	0	0	0	21829000	6438600	15390000	29409000	17376000	12033000	20963	3262	19843	128798;128799;128800	174640;174641;174642	174642			3	
GSLPWQGLK	1	Unmodified	984.53927	0.53926584	5738	Q9Y6M4;P78368;Q9HCP0	CSNK1G3;CSNK1G2;CSNK1G1	Casein kinase I isoform gamma-3;Casein kinase I isoform gamma-2;Casein kinase I isoform gamma-1	yes	no	0	0	0	0				By MS/MS	3	0			1										1	56.895	56.647	2	0.00051889	48663	160511_QHF_FH_JSI12i_3	89.296	70.565			0.52557	0.59449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52557	0.59449	NaN	1	1	Median	71580000	44824000	26757000	0	0	0	0	0	0	0	0	0	71580000	44824000	26757000	20964	5738	19844	128801	174643	174643			1	
GSLQILDQLLLPK	1	Unmodified	1436.8603	0.86026563	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.64	101.53	2	9.855E-67	89257	160511_QHF_FH_JSI11i_2	234.3	208.86			0.88102	0.81956	19.519	4	1	Median	0.96391	0.8216	NaN	1	0	Median	0.9794	1.1892	NaN	1	0	Median	0.80525	0.81751	NaN	1	0	Median	0.71579	0.7821	NaN	1	1	Median	961420000	522760000	438660000	195750000	100860000	94893000	259460000	129340000	130120000	262230000	141390000	120830000	243980000	151170000	92810000	20965	4456	19845	128802;128803;128804;128805	174644;174645;174646;174647	174646			4	
GSLQPAPAQPPGDPAAQASVSNGEDAGGGAGR	0	Unmodified	2886.3492	0.34923982	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	47.387	46.853	2;3	3.654E-07	42507	160511_QHF_FH_JSI12i_1	85.855	79.557			1.17	1.193	3.1603	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1984	1.1666	NaN	1	1	Median	1.1423	1.2199	NaN	1	1	Median	57423000	21036000	36387000	0	0	0	0	0	0	34403000	14167000	20237000	23020000	6869400	16151000	20966	175	19846	128806;128807;128808	174648;174649;174650	174649			3	
GSLRPNGIIVIK	1	Unmodified	1265.782	0.78195573	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			58.432	49.628	3	0.0019532	27286	160513_QHF_FH_JSI10Kac_6	60.161	42.353			1.0026	1.0039	6.8027	2	1	Median	1.1042	0.95675	NaN	1	1	Median	0.91031	1.0534	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26576000	15740000	10836000	10559000	5639400	4919800	16017000	10100000	5916400	0	0	0	0	0	0	20967	4463	19847	128809;128810	174651;174652	174652			2	
GSLSAMR	0	Unmodified	720.35886	0.35885863	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	12.042	11.781	2	0.0036275	8896	160511_QHF_FH_JSI12i_3	103.29	0			1.3055	1.2251	14.02	2	0	Median	1.5603	1.3528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0923	1.1095	NaN	1	0	Median	433440000	196180000	237260000	106230000	37305000	68929000	0	0	0	0	0	0	327210000	158880000	168330000	20968	5526	19848	128811;128812;128813	174653;174654	174654			2	
GSLSNAGDPEIVK	1	Unmodified	1285.6514	0.65139506	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	35.141	34.532	2	1.1515E-16	31336	160511_QHF_FH_JSI12i_1	133.79	116.36			1.2773	1.0448	12.45	3	1	Plateau	1.2773	1.0448	NaN	1	0	Median	0.69797	0.82757	NaN	1	1	Median	1.0338	1.0032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	332630000	170270000	162360000	124270000	56918000	67347000	111670000	63058000	48616000	96694000	50297000	46397000	0	0	0	20969	387	19849	128814;128815;128816;128817;128818;128819	174655;174656;174657;174658;174659;174660	174656			6	
GSLTEGALAHSGNPVSK	1	Unmodified	1623.8216	0.82164829	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.33		6	4					3		4	3	3	3	37.848	34.648	2;3	2.1298E-28	30452	160511_QHF_FH_JSI10i_2	224.05	194.12			0.83455	0.83567	28.353	11	9	Median	0.96213	0.84021	17.998	3	3	Plateau	0.62104	1.0421	24.896	3	2	Plateau	0.83455	0.83567	7.9026	3	2	Median	1.3288	1.3839	21.208	2	2	Median	585700000	310650000	275060000	162590000	94840000	67745000	188120000	107920000	80195000	110660000	60422000	50241000	124340000	47462000	76875000	20970	5463	19850	128820;128821;128822;128823;128824;128825;128826;128827;128828;128829;128830;128831;128832	174661;174662;174663;174664;174665;174666;174667;174668;174669;174670;174671;174672;174673;174674;174675	174670			15	
GSLTFEPLTLVPIQTK	1	Unmodified	1742.9818	0.98183733	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	101.32	101.18	2	1.8369E-07	91778	160511_QHF_FH_JSI12i_1	164.11	140.87			0.69519	0.74554	8.5904	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77937	0.79795	NaN	1	0	Median	0.6981	0.75421	11.243	2	1	Median	225550000	132590000	92958000	0	0	0	0	0	0	75894000	34240000	41654000	149650000	98347000	51304000	20971	4930	19851	128833;128834;128835	174676;174677	174676			2	
GSLTSEEFAK	1	Unmodified	1067.5135	0.5135046	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			30.569	30.239	2	0.0063944	26945	160511_QHF_FH_JSI10i_1	54.539	42.946			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20972	3342	19852	128836	174678	174678			1	
GSLVAPDR	0	Unmodified	813.43447	0.43446642	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.42	3	4	1			1	3	3	1	3	5	3	5	15.377	10.839	2	0.00049563	12937	160511_QHF_FH_JSI10i_1	106.36	61.664			0.92917	0.97696	15.165	16	1	Median	1.1828	1.009	3.7211	3	0	Plateau	0.78253	0.92987	19.058	5	0	Median	0.8552	0.86513	12.688	3	0	Plateau	0.96594	1.0731	18.866	5	1	Median	1792300000	929460000	862850000	457200000	204010000	253190000	549320000	294160000	255160000	215390000	114790000	100600000	570400000	316500000	253900000	20973	1664	19853	128837;128838;128839;128840;128841;128842;128843;128844;128845;128846;128847;128848;128849;128850;128851;128852	174679;174680;174681;174682;174683;174684;174685;174686;174687;174688;174689;174690;174691;174692;174693;174694	174683			12	
GSLVDYLR	0	Unmodified	921.49198	0.4919813	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.479	60.165	2	0.0010662	51655	160511_QHF_FH_JSI12i_2	87.181	50.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20974	1517	19854	128853	174695	174695			1	
GSLVGGGR	0	Unmodified	701.38204	0.38203692	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			8.8062	8.2928	2	0.0023754	6081	160511_QHF_FH_JSI10i_3	78.616	38.167			0.99882	0.98085	25.678	2	2	Median	1.4118	1.1761	NaN	1	1	Median	0.70666	0.81799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116190000	58582000	57608000	63255000	27015000	36239000	52936000	31567000	21369000	0	0	0	0	0	0	20975	5147	19855	128854;128855;128856	174696;174697;174698	174697			3	
GSMAGSTGVHDTVVNQLLSK	1	Oxidation (M)	2015.9946	0.99460363	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	1	0		By MS/MS		By MS/MS	3	0			2								1		1	57.195	56.301	3	7.226E-09	48408	160511_QHF_FH_JSI12i_3	108.71	102.87			0.74078	0.79671	19.973	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80133	0.91756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68481	0.69177	NaN	1	0	Median	79335000	45217000	34119000	0	0	0	23749000	15226000	8522900	0	0	0	55587000	29991000	25596000	20976	1586	19856	128857;128858	174699;174700	174700		1248	2	
GSMAGSTGVHDTVVNQLLSK	1	Unmodified	1999.9997	0.99968901	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	63.424	62.528	2;3	1.2014E-16	53981	160511_QHF_FH_JSI12i_3	119.69	104.66			0.77045	0.85229	5.4574	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72803	0.88583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81534	0.82003	NaN	1	0	Median	273490000	157150000	116350000	0	0	0	81998000	51029000	30969000	0	0	0	191500000	106120000	85378000	20977	1586	19856	128859;128860;128861	174701;174702;174703	174703			3	
GSMTMSIQWK	1	Unmodified	1167.5417	0.54165038	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	67.294	58.241	2	1.72E-33	32069	160513_QHF_FH_JSI10Kac_6	195.17	176.08			1.0411	0.98728	20.586	4	1	Median	1.1578	0.98519	NaN	1	0	Median	0.82381	0.98937	NaN	1	0	Median	0.93614	0.93152	NaN	1	1	Median	1.3276	1.4562	NaN	1	0	Median	115480000	55213000	60266000	26373000	10163000	16210000	41406000	21948000	19458000	34511000	17179000	17332000	13189000	5922700	7265800	20978	3141	19857	128862;128863;128864;128865	174704;174705;174706;174707	174707			3	
GSMTMSIQWK	1	Oxidation (M)	1183.5366	0.536565	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	54.515	44.682	2	0.016596	23343	160513_QHF_FH_JSI12Kac_6	61.78	55.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20979	3141	19857	128866	174708	174708		2204	1	
GSNEEDTDTPLFIGK	1	Unmodified	1621.7471	0.74714594	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	55.464	54.805	2	1.8506E-137	49604	160511_QHF_FH_JSI11i_1	290.66	275.28			1.5893	1.5545	9.9835	5	2	Median	1.7775	1.4481	NaN	1	1	Median	1.5648	1.8186	NaN	1	0	Median	1.5893	1.5545	NaN	1	0	Median	1.5399	1.6051	11.252	2	1	Median	461110000	190380000	270730000	83729000	28611000	55117000	104300000	41096000	63201000	95657000	41168000	54489000	177420000	79506000	97918000	20980	28	19858	128867;128868;128869;128870;128871	174709;174710;174711;174712;174713;174714;174715	174710			7	
GSNGAFYK	1	Unmodified	842.39227	0.39226725	1725;1726;2248	Q06787;P51114;P51116	FMR1;FXR1;FXR2	Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	12.854	12.355	2	0.0011031	10109	160511_QHF_FH_JSI10i_2	93.992	67.82			1.1215	1.2501	8.7493	5	1	Median	1.3373	1.1334	NaN	1	0	Median	1.0892	1.304	3.84	2	1	Median	1.0798	1.0814	NaN	1	0	Median	1.1215	1.2501	NaN	1	0	Median	431300000	211430000	219860000	91974000	39618000	52357000	138640000	75067000	63572000	103600000	44645000	58955000	97086000	52105000	44981000	20981	2248;1725;1726	19859	128872;128873;128874;128875;128876	174716;174717;174718;174719;174720	174719			5	
GSNLDAPEPYR	0	Unmodified	1217.5677	0.56766543	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.536	28.973	2	0.00035521	25960	160511_QHF_FH_JSI12i_1	82.445	67.607			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20982	1273	19860	128877	174721	174721			1	
GSNMDFREPTEEER	0	Unmodified	1695.7159	0.71586259	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.81	0.732	8	9	4							4	4	6	7	28.669	28.064	2;3	3.3252E-29	24101	160511_QHF_FH_JSI11i_3	189.13	153.17			0.93564	0.95816	8.1747	20	0	Median	1.0674	0.88206	10.851	4	0	Median	0.77044	0.93028	3.5515	4	0	Median	1.0118	0.98578	4.4239	6	0	Median	0.90086	0.9685	9.0885	6	0	Median	5147700000	2520900000	2626800000	1033600000	423240000	610360000	1030300000	539550000	490740000	1560200000	806140000	754050000	1523600000	751940000	771670000	20983	2619	19861	128878;128879;128880;128881;128882;128883;128884;128885;128886;128887;128888;128889;128890;128891;128892;128893;128894;128895;128896;128897;128898	174722;174723;174724;174725;174726;174727;174728;174729;174730;174731;174732;174733;174734;174735;174736;174737;174738;174739;174740;174741;174742;174743;174744;174745;174746;174747;174748;174749;174750;174751;174752;174753;174754;174755;174756;174757	174725			36	
GSNMDFREPTEEER	0	Oxidation (M)	1711.7108	0.71077721	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.51	2	14	3							3	3	7	6	24.8	24.198	2;3	6.5684E-08	23453	160511_QHF_FH_JSI11i_2	141	136.53			1.0262	1.0837	26.305	18	0	Median	1.2809	1.0815	15.738	3	0	Median	1.1614	1.4046	22.555	3	0	Plateau	1.1143	1.0898	12.392	7	0	Median	1.0202	1.027	47.87	5	0	Median	1070800000	559830000	510960000	186580000	86014000	100570000	157450000	97306000	60146000	455430000	224630000	230800000	271330000	151880000	119450000	20984	2619	19861	128899;128900;128901;128902;128903;128904;128905;128906;128907;128908;128909;128910;128911;128912;128913;128914;128915;128916;128917	174758;174759;174760;174761;174762;174763;174764;174765;174766;174767;174768;174769	174766		2053	11	
GSNNVALGYDEGSIIVK	1	Unmodified	1734.8788	0.87882882	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	63.922	63.325	2;3	1.0079E-23	57210	160511_QHF_FH_JSI10i_1	183.28	159.43			0.84602	0.87899	20.783	6	0	Median	1.0581	0.86538	NaN	1	0	Median	0.84058	1.0045	NaN	1	0	Median	0.87965	0.85582	28.773	2	0	Median	0.69979	0.7418	26.207	2	0	Median	1258100000	636100000	621990000	222320000	97703000	124620000	222910000	119160000	103740000	390070000	197970000	192100000	422790000	221260000	201530000	20985	1438	19862	128918;128919;128920;128921;128922;128923	174770;174771;174772;174773;174774;174775;174776;174777;174778;174779;174780;174781	174778			12	
GSNPHLQTFTFTR	0	Unmodified	1504.7423	0.74227576	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			53.201	44.618	2	0.00030577	24636	160513_QHF_FH_JSI10Kac_6	87.363	70.731			0.46132	0.54697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46132	0.54697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7745400	5292900	2452500	0	0	0	7745400	5292900	2452500	0	0	0	0	0	0	20986	4399	19863	128924	174782;174783	174783			2	
GSNSLPLLR	0	Unmodified	955.54508	0.5450795	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.92		3	5					1		2	2	2	3	48.067	45.953	2	7.7569E-12	38920	160511_QHF_FH_JSI12i_3	143.73	84.753			0.90818	0.96499	52.453	8	6	Median	1.3833	1.1363	16.404	2	2	Median	0.88709	1.0612	13.389	2	1	Median	0.62017	0.59793	67.643	2	1	Median	0.52339	0.55699	76.558	2	2	Median	1572600000	1167100000	405500000	29178000	14341000	14837000	186270000	100830000	85444000	540380000	376350000	164030000	816790000	675600000	141190000	20987	1890	19864	128925;128926;128927;128928;128929;128930;128931;128932;128933	174784;174785;174786;174787;174788;174789;174790;174791;174792;174793;174794;174795;174796;174797	174797			14	
GSNTCEVHFENTK	1	Unmodified	1521.6518	0.65180577	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.055	16.801	3	0.016261	13589	160511_QHF_FH_JSI11i_2	40.237	34.631			1.0523	1.0496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0523	1.0496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25689000	10375000	15314000	0	0	0	0	0	0	25689000	10375000	15314000	0	0	0	20988	4777	19865	128934	174798	174798			1	
GSNTIASAAADK	1	Unmodified	1104.5411	0.54111633	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.57	4	4	1		3	4	1			2	5	5	5	17.788	13.172	2	8.3886E-31	5431	160513_QHF_FH_JSI9Kac_3	202.16	171.09			1.0397	1.0688	12.299	13	1	Median	1.3543	1.1082	1.5462	2	0	Median	0.73142	0.9876	8.3693	4	0	Linear	1.2497	1.1948	7.922	3	0	Median	0.98397	1.0675	16.965	4	1	Median	3982500000	2010200000	1972300000	691330000	303720000	387610000	1027600000	574760000	452810000	1229200000	650750000	578410000	1034400000	480960000	553470000	20989	1844	19866	128935;128936;128937;128938;128939;128940;128941;128942;128943;128944;128945;128946;128947;128948;128949;128950;128951	174799;174800;174801;174802;174803;174804;174805;174806;174807;174808;174809;174810;174811;174812;174813;174814;174815;174816;174817;174818;174819;174820;174821;174822;174823;174824;174825	174812			27	
GSNTIASAAADKIPGLLGVFQK	2	Unmodified	2157.1794	0.17936793	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			100.01	99.801	3	1.186E-05	82516	160511_QHF_FH_JSI10i_3	74.029	65.535			0.57229	0.47673	25.424	3	3	Median	0.52864	0.4409	11.05	2	2	Median	0.58227	0.67038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38354000	25997000	12357000	27220000	17675000	9545200	11134000	8322600	2811300	0	0	0	0	0	0	20990	1844	19867	128952;128953;128954	174826;174827;174828	174826			3	
GSNWVPR	0	Unmodified	814.40859	0.40858602	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	21.256	20.746	2	0.0034374	17845	160511_QHF_FH_JSI10i_2	94.006	51.092			1.0179	0.99515	11.904	5	2	Median	1.1838	0.99389	21.882	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0352	1.0089	1.9447	2	1	Median	0.88117	0.90497	NaN	1	0	Median	888440000	430760000	457680000	214540000	89367000	125180000	0	0	0	368320000	184550000	183770000	305580000	156850000	148730000	20991	2217	19868	128955;128956;128957;128958;128959;128960;128961	174829;174830;174831;174832;174833;174834;174835;174836	174834			8	
GSPDGSLQTGKPSAPK	2	Unmodified	1525.7736	0.77363546	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	18.665	18.171	3	0.00042209	15610	160511_QHF_FH_JSI12i_1	58.83	51.937			1.0531	0.9401	18.625	4	0	Median	1.0254	0.83798	NaN	1	0	Median	0.68551	0.7948	NaN	1	0	Median	1.0815	1.0547	NaN	1	0	Median	1.1239	1.1763	NaN	1	0	Median	356470000	194810000	161660000	73928000	40410000	33518000	101820000	59622000	42200000	86471000	43186000	43284000	94251000	51588000	42662000	20992	3483	19869	128962;128963;128964;128965	174837	174837			1	
GSPFQVTR	0	Unmodified	890.46102	0.46101552	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	27.385	26.936	2	0.037537	22598	160511_QHF_FH_JSI12i_3	40.021	13.85			1.1082	1.2649	18.14	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1082	1.3201	NaN	1	0	Median	1.017	0.94587	NaN	1	0	Median	1.2269	1.2649	NaN	1	0	Median	302260000	153960000	148300000	0	0	0	55161000	27631000	27530000	100420000	55034000	45389000	146680000	71295000	75384000	20993	5119	19870	128966;128967;128968	174838;174839	174839			2	
GSPGVVHLVAFHPDPTR	0	Unmodified	1784.9322	0.93220179	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	12.5	5.79			3						8	3	2	3	3	60.647	53.5	3;4	3.4142E-05	29021	160513_QHF_FH_JSI11Kac_6	79.97	70.312			1.0236	1.0245	26.104	11	5	Median	1.2496	1.0382	11.717	3	0	Plateau	0.86903	1.016	1.1749	2	0	Median	1.055	1.0353	3.4648	3	2	Median	1.0107	1.1201	55.917	3	3	Median	284590000	132070000	152530000	68324000	29347000	38977000	72829000	40699000	32131000	60162000	27041000	33121000	83278000	34979000	48299000	20994	2304	19871	128969;128970;128971;128972;128973;128974;128975;128976;128977;128978;128979	174840;174841;174842;174843;174844;174845;174846;174847;174848;174849	174840			10	
GSPHYFSPFRPY	0	Unmodified	1453.6779	0.67788459	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	3	1	2	60.774	55.867	3	0.0007688	47915	160511_QHF_FH_JSI12i_3	51.774	46.695			0.92352	0.9302	22.387	8	3	Median	1.2022	1.0254	13.093	2	2	Median	0.6941	0.80446	32.713	3	1	Median	1.0131	0.92574	NaN	1	0	Median	0.79212	0.83992	21.762	2	0	Median	308130000	169950000	138180000	42784000	19596000	23188000	118070000	71712000	46360000	70531000	37559000	32973000	76744000	41087000	35657000	20995	2376	19872	128980;128981;128982;128983;128984;128985;128986;128987	174850;174851;174852;174853;174854;174855	174854			6	
GSPLAEGPQAFFPER	0	Unmodified	1601.7838	0.78380622	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	77.329	76.351	2	1.0953E-16	67276	160511_QHF_FH_JSI9i_2	123.95	105.68			0.75637	0.82396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75637	0.82396	NaN	1	1	Median	20365000	16833000	3532400	0	0	0	7902000	7902000	0	0	0	0	12463000	8930900	3532400	20996	3760	19873	128988;128989;128990;128991;128992;128993;128994	174856;174857;174858;174859;174860;174861;174862	174858			7	
GSPLGEVVEQGITR	0	Unmodified	1440.7573	0.75725712	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	4.86	1	7					2			1	3	3	3	64.305	62.249	2	0.00012144	55305	160511_QHF_FH_JSI10i_2	102.66	77.87			0.80033	0.83639	10.365	8	3	Median	0.99294	0.87347	NaN	1	0	Median	0.65254	0.78679	2.511	2	1	Median	0.84553	0.84697	8.5121	2	0	Median	0.74125	0.82196	14.81	3	2	Plateau	598930000	320320000	278610000	103070000	45155000	57917000	129400000	79795000	49605000	207660000	108740000	98917000	158800000	86631000	72166000	20997	1733	19874	128995;128996;128997;128998;128999;129000;129001;129002;129003;129004	174863;174864;174865;174866;174867;174868;174869;174870;174871;174872;174873;174874;174875;174876	174876			14	
GSPLLIGVR	0	Unmodified	910.56	0.56000128	2242;608	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5.12	1	4	4					1	1	3	3	3	2	54.351	51.647	2	1.1604E-05	44543	160511_QHF_FH_JSI11i_2	110.81	98.451			1.2872	1.0092	24.078	10	1	Linear	1.2409	1.0798	25.575	3	0	Plateau	0.87467	1.0555	30.778	3	0	Plateau	1.0885	1.0492	23.125	2	0	Median	1.1516	1.2214	22.598	2	1	Median	697100000	339220000	357880000	127810000	59867000	67944000	147280000	75603000	71675000	220080000	108770000	111310000	201930000	94983000	106950000	20998	2242;608	19875	129005;129006;129007;129008;129009;129010;129011;129012;129013;129014;129015	174877;174878;174879;174880;174881;174882;174883;174884;174885;174886;174887	174883			11	
GSPLNAAPYGIESMSQDTEVR	0	Unmodified	2221.0321	0.032111349	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	70.95	70.65	2	7.2564E-47	64298	160511_QHF_FH_JSI11i_1	210.9	194.56			0.96848	1.022	16.21	2	0	Median	NaN	NaN	NaN	0	0	Median	0.794	0.91132	NaN	1	0	Median	1.1813	1.1461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69508000	39409000	30099000	0	0	0	35639000	18240000	17399000	33868000	21169000	12699000	0	0	0	20999	1133	19876	129016;129017;129018	174888;174889;174890;174891;174892;174893	174890			6	
GSPLVVISQGK	1	Unmodified	1083.6288	0.62880913	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.98	4	4	2				3	2		4	4	4	3	51.611	47.367	2	1.7852E-05	40488	160511_QHF_FH_JSI12i_2	104.22	91.432			1.0069	1.0034	11.654	15	5	Median	1.1617	0.9815	9.7232	4	2	Median	0.81839	0.95611	21.297	4	2	Median	1.0005	0.98342	3.3933	4	0	Median	0.97379	1.0401	6.6739	3	1	Median	1062300000	551840000	510450000	216740000	104880000	111860000	289130000	170110000	119020000	321780000	157170000	164600000	234630000	119680000	114960000	21000	2739	19877	129019;129020;129021;129022;129023;129024;129025;129026;129027;129028;129029;129030;129031;129032;129033	174894;174895;174896;174897;174898;174899;174900;174901;174902;174903;174904;174905;174906;174907;174908;174909;174910;174911;174912;174913;174914;174915	174897			22	
GSPLVVSLIGALLR	0	Unmodified	1393.8657	0.86568536	192	O14727	APAF1	Apoptotic protease-activating factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	99.513	92.003	2;3	7.2923E-39	54941	160513_QHF_FH_JSI10Kac_6	189.17	182.56			0.85522	0.85999	31.642	4	0	Median	1.0167	0.87534	NaN	1	0	Median	0.60466	0.71144	24.314	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2267	1.2983	NaN	1	0	Median	422800000	236630000	186170000	110190000	50649000	59545000	281200000	168110000	113090000	0	0	0	31407000	17866000	13541000	21001	192	19878	129034;129035;129036;129037;129038;129039	174916;174917;174918;174919;174920;174921;174922;174923	174921			8	
GSPMEISLPIALSK	1	Unmodified	1441.7851	0.78505177	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	6	10	2							3	6	5	4	92.47	91.954	2;3	5.8019E-05	83295	160511_QHF_FH_JSI10i_1	145.14	129.25			0.90302	0.9198	23.566	15	10	Median	1.0919	0.9198	6.9261	3	3	Median	0.85818	1.0798	39.009	5	3	Median	0.84841	0.82693	15.214	4	3	Median	0.82809	0.91592	11.55	3	1	Plateau	870810000	457590000	413210000	119680000	56569000	63106000	328640000	168830000	159810000	287060000	152510000	134560000	135430000	79689000	55740000	21002	943	19879	129040;129041;129042;129043;129044;129045;129046;129047;129048;129049;129050;129051;129052;129053;129054;129055;129056;129057	174924;174925;174926;174927;174928;174929;174930;174931;174932;174933;174934;174935;174936;174937;174938;174939;174940;174941;174942;174943;174944;174945	174932			22	
GSPNANEPPLVFVGK	1	Unmodified	1524.7936	0.79364262	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								3	1	1	2	63.996	63.17	2	3.2029E-07	56000	160511_QHF_FH_JSI9i_1	151.13	137.77			0.95482	0.94148	22.618	7	6	Median	1.0699	0.88396	34.679	3	2	Median	0.73352	0.8539	NaN	1	1	Median	0.95482	0.94148	NaN	1	1	Median	0.9243	0.97915	5.1289	2	2	Median	811530000	410050000	401480000	298750000	135770000	162990000	139080000	80914000	58164000	178800000	94881000	83918000	194900000	98487000	96411000	21003	1313	19880	129058;129059;129060;129061;129062;129063;129064	174946;174947;174948;174949;174950;174951;174952;174953;174954	174953			9	
GSPNETELIESAK	1	Unmodified	1373.6674	0.66743906	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	40.768	39.856	2	5.9082E-05	36018	160511_QHF_FH_JSI11i_1	75.618	45.863			0.24689	0.23237	24.313	2	2	Median	0.33229	0.27596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18343	0.19567	NaN	1	1	Median	407810000	355670000	52142000	151000000	126460000	24533000	0	0	0	0	0	0	256810000	229200000	27609000	21004	3009	19881	129065;129066;129067	174955;174956;174957	174955			3	
GSPNTASAEATLPR	0	Unmodified	1370.679	0.6790068	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.95	29.383	2	0.0022212	26362	160511_QHF_FH_JSI12i_1	71.888	58.118			0.61672	0.64326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61672	0.64326	NaN	1	1	Median	35454000	18908000	16546000	0	0	0	0	0	0	0	0	0	35454000	18908000	16546000	21005	3127	19882	129068;129069	174958;174959	174958			2	
GSPPVPSGPPMEEDGLR	0	Unmodified	1720.809	0.80903469	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.489	54.831	2	6.2571E-06	49872	160511_QHF_FH_JSI12i_1	98.942	85.742			1.1033	0.80019	13.554	4	2	Linear	1.156	0.97387	NaN	1	0	Median	0.66508	0.78532	NaN	1	1	Median	0.71889	0.70258	NaN	1	1	Median	0.77894	0.81535	NaN	1	0	Median	211630000	123570000	88068000	64415000	34208000	30207000	46039000	28513000	17526000	55351000	33378000	21974000	45828000	27467000	18361000	21006	4724	19883	129070;129071;129072;129073	174960;174961;174962;174963;174964	174961			5	
GSPQAISR	0	Unmodified	814.42972	0.42971539	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.9974	7.8803	2	0.011949	5516	160511_QHF_FH_JSI11i_1	62.546	23.584			1.0334	1.0033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0334	1.0033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	125060000	67129000	57933000	0	0	0	0	0	0	125060000	67129000	57933000	0	0	0	21007	3819	19884	129074	174965	174965			1	
GSPQQIDHAK	1	Unmodified	1079.536	0.53597137	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.66	4	8	5				4	3		4	7	7	6	7.2388	4.423	2;3	1.5243E-11	4366	160511_QHF_FH_JSI12i_2	153.05	106.92			1.0059	1.0147	15.304	21	4	Median	1.1684	0.99552	19.156	4	1	Median	0.86638	1.0118	11.683	5	1	Median	1.0932	1.0847	13.976	6	1	Median	0.99201	1.0534	19.146	6	1	Median	3800500000	1916900000	1883600000	645520000	281200000	364320000	733440000	396500000	336940000	1394400000	710940000	683450000	1027200000	528280000	498880000	21008	3911	19885	129075;129076;129077;129078;129079;129080;129081;129082;129083;129084;129085;129086;129087;129088;129089;129090;129091;129092;129093;129094;129095;129096;129097;129098	174966;174967;174968;174969;174970;174971;174972;174973;174974;174975;174976;174977;174978;174979;174980;174981;174982;174983;174984;174985;174986;174987;174988;174989;174990;174991;174992;174993;174994;174995	174972			30	
GSPQQIDHAKQLIEEK	2	Acetyl (K)	1861.9534	0.95339074	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		66.293	55.377	3	0.054039	29950	160513_QHF_FH_JSI11Kac_5	33.697	17.391			0.021221	0.02076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.021221	0.02076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2898400	2872500	25887	0	0	0	0	0	0	2898400	2872500	25887	0	0	0	21009	3911	19886	129099	174996	174996			1	
GSPRPQAPK	1	Unmodified	936.51411	0.51411372	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		5.9157	5.576	3	0.0074691	3649	160511_QHF_FH_JSI9i_3	43.442	27.78			0.81441	0.76888	19.417	3	1	Median	0.95857	0.76888	NaN	1	0	Median	0.46945	0.55103	NaN	1	1	Median	0.81441	0.7737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	484990000	277430000	207560000	233840000	128690000	105150000	208350000	127860000	80492000	42789000	20874000	21914000	0	0	0	21010	2586	19887	129100;129101;129102	174997;174998	174998			2	
GSPSSQSIPEK	1	Unmodified	1115.5459	0.54586736	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.711	14.012	2	0.00017575	11726	160511_QHF_FH_JSI12i_1	82.261	66.928			2.0827	1.9264	130.04	2	0	Median	0.95613	0.76807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5368	4.8315	NaN	1	0	Median	95957000	38530000	57427000	59699000	30226000	29472000	0	0	0	0	0	0	36258000	8303800	27955000	21011	4659	19888	129103;129104	174999;175000	174999			2	
GSPSSYTVQTAQDQAGVTSIR	0	Unmodified	2152.0396	0.039639568	4103	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.585	48.919	2	2.6367E-33	44451	160511_QHF_FH_JSI12i_1	151.72	136.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21012	4103	19889	129105	175001	175001			1	
GSPTGGAQLLK	1	Unmodified	1027.5662	0.56620887	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	28.373	27.652	2	0.0060092	24337	160511_QHF_FH_JSI10i_1	63.216	46.44			1.0096	1.004	13.821	6	0	Median	1.2074	1.0193	4.4536	2	0	Median	0.83681	1.0097	30.001	2	0	Median	0.97251	0.9529	NaN	1	0	Median	0.9638	1.0206	NaN	1	0	Median	370520000	181530000	188990000	84899000	33521000	51378000	96567000	52684000	43883000	95409000	46331000	49078000	93645000	48993000	44652000	21013	2561	19890	129106;129107;129108;129109;129110;129111	175002;175003;175004;175005	175004			4	
GSPVNALQNK	1	Unmodified	1026.5458	0.54580778	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.19	21.663	2	1.5651E-05	18999	160511_QHF_FH_JSI12i_1	100.02	83.477			1.0159	1.0169	17.453	4	0	Median	1.0009	0.82981	NaN	1	0	Median	1.0683	1.2717	NaN	1	0	Median	1.0311	1.0078	NaN	1	0	Median	0.96574	1.026	NaN	1	0	Median	225140000	108830000	116300000	57795000	25179000	32616000	60234000	27375000	32860000	57511000	26941000	30570000	49595000	29336000	20259000	21014	3675	19891	129112;129113;129114;129115	175006;175007;175008;175009;175010;175011	175007			6	
GSQAQPDSPSAQLALIAASQSFLQPGGK	1	Unmodified	2753.3984	0.39842185	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	101.26	101.17	3	2.1496E-35	91869	160511_QHF_FH_JSI11i_1	161	146.67			0.93827	0.95101	5.3769	6	5	Median	1.2053	1.0001	NaN	1	0	Median	0.74024	0.88455	0.40549	2	2	Median	0.99087	0.9723	2.9495	2	2	Median	0.90619	0.94979	NaN	1	1	Median	1320600000	704730000	615830000	214970000	87115000	127850000	524560000	299370000	225190000	380760000	186530000	194230000	200280000	131720000	68563000	21015	5616	19892	129116;129117;129118;129119;129120;129121	175012;175013;175014;175015;175016;175017;175018	175013			7	
GSQFAIR	0	Unmodified	777.41334	0.41333704	5189	Q9P0U1	TOMM7	Mitochondrial import receptor subunit TOM7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	3	2	4	2	22.493	20.625	2	8.1096E-21	16951	160511_QHF_FH_JSI12i_3	167.82	48.603			1.1878	1.314	22.789	8	5	Median	1.6408	1.3645	27.049	2	1	Median	1.093	1.314	1.9297	2	1	Median	1.0524	0.98218	27.105	3	2	Median	1.263	1.4129	NaN	1	1	Median	1254600000	577430000	677180000	229220000	100350000	128870000	334420000	160970000	173450000	527130000	248820000	278310000	163850000	67289000	96557000	21016	5189	19893	129122;129123;129124;129125;129126;129127;129128;129129;129130;129131;129132	175019;175020;175021;175022;175023;175024;175025;175026;175027;175028	175028			10	
GSQFGQSCCLR	0	Unmodified	1298.5496	0.5495893	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2								1	2	3	23.026	22.532	2	1.6464E-05	19060	160511_QHF_FH_JSI11i_3	104.95	89.537			1.1235	1.1906	25.442	6	1	Median	NaN	NaN	NaN	0	0	Median	0.95469	1.1539	NaN	1	0	Median	0.97606	0.94249	20.168	2	0	Median	1.3965	1.4922	16.08	3	1	Median	281270000	136160000	145110000	0	0	0	49246000	25393000	23853000	108190000	54696000	53495000	123830000	56072000	67762000	21017	878	19894	129133;129134;129135;129136;129137;129138	175029;175030;175031;175032;175033;175034	175029			5	
GSQFTSK	1	Unmodified	753.36572	0.36571815	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		7.3166	-0.29025	2	0.050677	2723	160513_QHF_FH_JSI11Kac_4	51.736	47.054			0.88507	0.87417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88507	0.87417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6716800	3395700	3321100	0	0	0	0	0	0	6716800	3395700	3321100	0	0	0	21018	5479	19895	129139	175035	175035			1	
GSQGGNFEGPNK	1	Unmodified	1190.5316	0.53161428	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	11.156	10.772	2	2.688E-07	8390	160511_QHF_FH_JSI11i_1	111.86	98.802			0.87284	0.90442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87284	0.90442	NaN	1	0	Median	30729000	16773000	13956000	0	0	0	0	0	0	0	0	0	30729000	16773000	13956000	21019	3809	19896	129140;129141	175036;175037;175038	175036			3	
GSQGPLPFHEK	1	Unmodified	1195.5986	0.59857163	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	3	4	27.249	26.774	2;3	1.8282E-07	22327	160511_QHF_FH_JSI12i_3	123.01	100.48			1.464	1.1748	31.013	7	3	Linear	0.64598	0.54751	NaN	1	1	Median	0.99334	1.1965	NaN	1	1	Median	1.2672	1.1985	2.8157	2	0	Median	1.2942	1.2742	22.814	3	1	Plateau	942080000	416410000	525680000	49528000	30307000	19221000	73866000	37200000	36666000	328990000	149060000	179930000	489700000	199840000	289860000	21020	5262	19897	129142;129143;129144;129145;129146;129147;129148;129149;129150;129151	175039;175040;175041;175042;175043;175044;175045;175046;175047;175048;175049;175050	175049			12	
GSQGYLVVR	0	Unmodified	977.52943	0.52942943	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		40.258	30.168	2	0.060261	17392	160513_QHF_FH_JSI11Kac_5	34.932	18.783			1.2963	1.2731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2963	1.2731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5279200	2384100	2895100	0	0	0	0	0	0	5279200	2384100	2895100	0	0	0	21021	620	19898	129152	175051	175051			1	
GSQITQQSTNQSR	0	Unmodified	1433.6859	0.68588309	1717	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	8.1991	5.5671	2	1.3737E-116	5309	160511_QHF_FH_JSI10i_1	273.8	239.27			1.1132	1.0227	16.774	6	0	Median	1.1841	0.99395	NaN	1	0	Median	0.86455	1.0516	NaN	1	0	Median	1.165	1.118	16.542	2	0	Median	1.0871	1.1273	31.621	2	0	Median	251150000	114950000	136200000	63957000	26211000	37746000	65657000	32917000	32740000	62568000	31594000	30974000	58972000	24227000	34745000	21022	1717	19899	129153;129154;129155;129156;129157;129158	175052;175053;175054;175055;175056;175057;175058;175059;175060;175061	175059			10	
GSQLAAGQK	1	Unmodified	858.45593	0.45593014	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0				By MS/MS	7	6	1					1							2	6.6012	2.8636	2	0.0011096	3949	160511_QHF_FH_JSI12i_1	80.438	55.44			1.1765	1.2738	2.6233	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1765	1.2738	2.6233	2	1	Median	124850000	56522000	68329000	0	0	0	0	0	0	0	0	0	124850000	56522000	68329000	21023	2212	19900	129159;129160	175062;175063	175062			2	
GSQMGTVQPIPCLLSMPTR	0	Unmodified	2072.0217	0.02168678	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		90.059	89.52	2	6.7071E-05	78748	160511_QHF_FH_JSI11i_2	90.412	75.621			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3297000	3297000	0	0	0	0	0	0	0	3297000	3297000	0	0	0	0	21024	5147	19901	129161;129162	175064;175065	175065			2	
GSQPPPAAESQSSLRR	0	Unmodified	1666.8387	0.83869534	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5	5.02		2	2					1		2	2	1		16.328	13.79	3	0.00019225	11098	160511_QHF_FH_JSI9i_3	46.926	35.655			0.96041	0.92301	13.294	5	0	Median	1.2471	1.0463	7.4756	2	0	Median	0.70542	0.83732	12.367	2	0	Median	0.96041	0.92301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116440000	58349000	58093000	75688000	32292000	43396000	38173000	24536000	13637000	2580700	1521100	1059600	0	0	0	21025	339	19902	129163;129164;129165;129166;129167	175066;175067;175068;175069;175070;175071	175067			6	
GSQSYYTVAHAISER	0	Unmodified	1667.7903	0.79034816	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		9.5	6.5			3						3	2	3	1		49.291	43.149	2;3	2.4601E-05	36028	160511_QHF_FH_JSI10i_3	98.531	81.505			1.1462	0.96546	31.637	5	1	Median	1.3097	1.0642	18.587	2	0	Median	0.62843	0.72574	40.364	2	1	Median	1.1551	1.146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	137610000	72399000	65213000	54358000	24114000	30244000	76338000	45055000	31283000	6915800	3230200	3685700	0	0	0	21026	1736	19903	129168;129169;129170;129171;129172;129173	175072;175073;175074;175075;175076	175072			5	
GSRPIDTSR	0	Unmodified	987.50976	0.50975662	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			6.25	5.63			3						1	2	2			5.8844	3.7897	2;3	0.00020404	3359	160511_QHF_FH_JSI9i_3	102.51	72.01			0.99283	0.9423	7.8755	4	0	Median	1.1604	0.9423	6.8622	2	0	Median	0.82291	0.96516	11.543	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	676060000	342720000	333340000	487320000	240290000	247030000	188740000	102430000	86302000	0	0	0	0	0	0	21027	2217	19904	129174;129175;129176;129177	175077;175078;175079	175078			3	
GSRPLLSFDPAFDELPHYALLK	1	Unmodified	2485.3005	0.3005457	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			4							1	1	2		101	100.91	3;4	7.1294E-23	89915	160511_QHF_FH_JSI11i_3	164.27	153.87			0.8629	0.84289	11.962	4	1	Median	0.97513	0.80157	NaN	1	0	Median	0.78938	0.89918	NaN	1	1	Median	0.8387	0.78415	17.325	2	0	Median	NaN	NaN	NaN	0	0	Median	1437700000	791090000	646570000	67276000	37537000	29739000	148420000	86813000	61609000	1222000000	666740000	555220000	0	0	0	21028	3723	19905	129178;129179;129180;129181	175080;175081;175082;175083;175084	175083			5	
GSRVDIETPNLEGTLTGPR	0	Unmodified	2011.0334	0.033431978	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			63.962	62.456	3	1.6861E-06	52279	160511_QHF_FH_JSI10i_3	96.391	91.389			1.3434	1.313	11.565	2	0	Median	1.7651	1.4249	NaN	1	0	Median	1.0224	1.2099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81317000	39896000	41421000	25212000	12493000	12719000	56105000	27402000	28702000	0	0	0	0	0	0	21029	2286	19906	129182;129183	175085;175086	175086			2	
GSSAAGLTASVMR	0	Unmodified	1206.6027	0.60267073	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.1	2	2	1				2	1		1	2	3	2	41.026	38.814	2	1.0139E-05	33049	160511_QHF_FH_JSI12i_3	133.89	107.95			0.77981	0.82661	54.989	6	6	Median	NaN	NaN	NaN	0	0	Median	1.2401	1.4753	NaN	1	1	Median	1.1344	1.1328	62.587	3	3	Median	0.5314	0.56736	8.6531	2	2	Median	328090000	153620000	174470000	0	0	0	76556000	23798000	52758000	142840000	64692000	78152000	108690000	65134000	43557000	21030	1410	19907	129184;129185;129186;129187;129188;129189;129190;129191	175087;175088;175089;175090;175091;175092;175093;175094	175094			8	
GSSAAGLTASVMRDPSSR	0	Oxidation (M)	1764.8425	0.84246009	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	4.8			1					4		2	1	1	1	33.335	25.392	3	0.00059149	20643	160511_QHF_FH_JSI9i_3	69.485	57.2			1.0551	1.1256	13.299	5	1	Median	1.4428	1.184	2.7006	2	1	Median	0.7387	0.88547	NaN	1	0	Median	0.98475	0.96129	NaN	1	0	Median	1.0551	1.1256	NaN	1	0	Median	43102000	17942000	25160000	35304000	13465000	21839000	2487600	1603600	884050	3299700	1871200	1428500	2010800	1002200	1008700	21031	1410	19908	129192;129193;129194;129195;129196	175095;175096;175097	175096		1058	3	
GSSAAGLTASVMRDPSSR	0	Unmodified	1748.8475	0.84754546	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				40.958	39.422	3	5.5249E-05	32194	160511_QHF_FH_JSI9i_3	72.187	56.049			1.3956	1.1328	NaN	1	0	Median	1.3956	1.1328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133060000	55093000	77965000	133060000	55093000	77965000	0	0	0	0	0	0	0	0	0	21032	1410	19908	129197	175098	175098			1	
GSSAGFDR	0	Unmodified	795.35113	0.35113072	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.29	2	4	1				1	1		2	3	3	1	7.5588	5.1071	2	0.00024112	4731	160511_QHF_FH_JSI12i_2	117.1	88.569			0.9417	0.96794	28.326	9	2	Median	0.85322	0.71385	67.915	2	1	Median	0.80852	0.99146	11.754	3	0	Median	0.96996	0.95331	1.4293	3	1	Plateau	0.9417	1.0313	NaN	1	0	Median	2270100000	1214300000	1055800000	236380000	111510000	124870000	933590000	520030000	413560000	915600000	482460000	433140000	184510000	100330000	84185000	21033	1922	19909	129198;129199;129200;129201;129202;129203;129204;129205;129206	175099;175100;175101;175102;175103;175104;175105;175106;175107;175108;175109	175100			11	
GSSAGGGGSGAAAATAATAGGQHR	0	Unmodified	1926.8892	0.88922736	136	O00458	IFRD1	Interferon-related developmental regulator 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			13.233	12.47	3	1.238E-08	9883	160511_QHF_FH_JSI10i_3	50.827	41.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21034	136	19910	129207	175110	175110			1	
GSSASLVLK	1	Unmodified	860.49673	0.49673232	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.24	4	4	3			3	3	4	1	6	6	5	5	31.256	25.787	2	1.548E-32	15821	160513_QHF_FH_JSI10Kac_4	190.51	144.09			0.96286	0.98867	24.928	22	1	Median	1.123	0.94879	37.596	6	1	Median	0.88728	1.0535	11.755	6	0	Median	0.99279	0.9933	9.8937	5	0	Median	0.8436	0.945	32.64	5	0	Median	6503900000	3269400000	3234500000	1474000000	637210000	836810000	1701200000	963090000	738160000	1767400000	926140000	841240000	1561200000	742990000	818260000	21035	2146	19911	129208;129209;129210;129211;129212;129213;129214;129215;129216;129217;129218;129219;129220;129221;129222;129223;129224;129225;129226;129227;129228;129229	175111;175112;175113;175114;175115;175116;175117;175118;175119;175120;175121;175122;175123;175124;175125;175126;175127;175128;175129;175130;175131;175132;175133;175134;175135;175136;175137;175138;175139	175119			29	
GSSASLVLKR	1	Acetyl (K)	1058.6084	0.60840804	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	45.535	35.361	2	1.1505E-19	19878	160513_QHF_FH_JSI11Kac_5	166.77	98.688			0.35779	0.37994	122.29	3	2	Median	NaN	NaN	NaN	0	0	Median	2.1041	2.537	NaN	1	1	Median	0.26196	0.25834	NaN	1	0	Median	0.35779	0.37994	NaN	1	1	Median	31797000	21917000	9879500	0	0	0	4494300	879660	3614600	24229000	19124000	5104800	3073800	1913700	1160100	21036	2146	19912	129230;129231;129232;129233	175140;175141;175142;175143	175143	2246		4	
GSSASLVLKR	1	Unmodified	1016.5978	0.59784335	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				27.327	18.917	3	0.060924	10904	160513_QHF_FH_JSI9Kac_6	15.372	7.5676			0.95235	0.81547	NaN	1	0	Median	0.95235	0.81547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4765500	2495900	2269600	4765500	2495900	2269600	0	0	0	0	0	0	0	0	0	21037	2146	19912	129234	175144	175144			1	
GSSAVGLTAYVMK	1	Unmodified	1282.6591	0.65912298	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.54	4		3				1	3	1	3	3	4	2	66.554	61.951	2	9.1995E-23	56076	160511_QHF_FH_JSI10i_1	181.53	142.23			1.0323	1.1919	37.981	10	6	Median	1.4086	1.1843	NaN	1	1	Median	0.98985	1.1994	18.917	3	2	Median	1.1083	1.0572	63.186	4	2	Median	1.0929	1.1279	11.887	2	1	Median	564940000	277670000	287280000	6347100	2523900	3823200	168810000	93906000	74901000	202970000	88113000	114860000	186820000	93125000	93695000	21038	1409	19913	129235;129236;129237;129238;129239;129240;129241;129242;129243;129244;129245;129246	175145;175146;175147;175148;175149;175150;175151;175152;175153;175154;175155;175156	175150			11	
GSSAVGLTAYVMK	1	Oxidation (M)	1298.654	0.6540376	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		14.8	0.433							1	3		1	1	2		60.386	49.571	2	3.9831E-08	27055	160513_QHF_FH_JSI11Kac_5	112.13	100.54			0.98107	0.87078	15.08	4	0	Linear	1.0074	0.8429	NaN	1	0	Median	0.79283	0.91054	NaN	1	0	Median	0.78736	0.76982	22.028	2	0	Median	NaN	NaN	NaN	0	0	Median	13913000	7285600	6627100	4176200	1733100	2443100	3123500	1895900	1227600	6612900	3656600	2956300	0	0	0	21039	1409	19913	129247;129248;129249;129250	175157;175158;175159;175160	175159		1053	4	
GSSDVDQLGK	1	Unmodified	1004.4775	0.47745344	2150	Q00534	CDK6	Cyclin-dependent kinase 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	15.446	15.163	2	0.010536	12602	160511_QHF_FH_JSI11i_1	48.091	37.218			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21040	2150	19914	129251;129252	175161;175162	175161			2	
GSSEQAESDNMDVPPEDDSK	1	Unmodified	2135.8437	0.84370146	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	15									4	3	4	4	29.137	28.57	2	6.6066E-33	24831	160511_QHF_FH_JSI10i_1	151.9	145.46			0.95674	0.97275	43.62	7	5	Median	2.243	1.8041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.181	1.1493	68.331	2	2	Median	0.87909	0.90432	25.185	4	2	Median	144930000	72317000	72613000	19585000	5848500	13736000	0	0	0	31416000	16597000	14819000	93929000	49871000	44058000	21041	2325	19915	129253;129254;129255;129256;129257;129258;129259;129260;129261;129262;129263;129264;129265;129266;129267	175163;175164;175165;175166;175167;175168;175169;175170;175171;175172;175173;175174;175175;175176;175177;175178;175179;175180	175174			18	
GSSFEMTDDDSAIR	0	Unmodified	1529.6304	0.63040162	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.961	43.186	2	1.3957E-14	38713	160511_QHF_FH_JSI10i_1	157.68	143.18			1.1022	1.039	13.648	5	0	Median	1.2142	0.97232	13.581	2	0	Median	0.88929	1.039	NaN	1	0	Median	1.1184	1.0903	NaN	1	0	Median	0.78435	0.7989	NaN	1	0	Median	232260000	117450000	114810000	65913000	30619000	35294000	57282000	30545000	26737000	53213000	27152000	26061000	55853000	29136000	26717000	21042	3221	19916	129268;129269;129270;129271;129272	175181;175182;175183;175184;175185;175186;175187;175188;175189	175185			8	
GSSFIALSHK	1	Unmodified	1045.5556	0.55564418	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	0	By MS/MS		By matching		11.7	6.13			1						2	2		1		36.94	30.271	2;3	0.0011159	24260	160511_QHF_FH_JSI9i_3	78.655	56.569			1.0876	0.90928	15.842	3	1	Median	1.0726	0.89352	2.4721	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2207	1.1737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25146000	12330000	12815000	19652000	10188000	9464400	0	0	0	5493800	2142800	3351000	0	0	0	21043	629	19917	129273;129274;129275	175190;175191	175190			2	
GSSGGSGAKPSDAASEAARPATSTLNR	1	Unmodified	2502.2059	0.20587005	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			27.317	25.978	3;4	0.0001183	21113	160511_QHF_FH_JSI9i_3	46.404	33.475			1.3764	1.1118	14.198	3	0	Plateau	1.3025	1.0438	8.9191	2	0	Median	0.74942	0.83742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164340000	75908000	88435000	133530000	59896000	73636000	30810000	16012000	14799000	0	0	0	0	0	0	21044	2217	19918	129276;129277;129278	175192;175193;175194;175195;175196	175196			5	
GSSGGYGSGGAALQPK	1	Unmodified	1392.6634	0.66335673	3745	Q8TF74	WIPF2	WAS/WASL-interacting protein family member 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	21.5	20.77	2	6.2822E-07	18209	160511_QHF_FH_JSI12i_1	125.36	113.49			1.7851	1.8308	14.67	3	3	Plateau	2.1422	1.7864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.579	1.6032	18.771	2	2	Median	85336000	28358000	56978000	23331000	3695100	19636000	0	0	0	0	0	0	62006000	24663000	37342000	21045	3745	19919	129279;129280;129281	175197;175198;175199	175198			3	
GSSGLGGGSSR	0	Unmodified	920.43117	0.43117195	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	9.4	5.24			2			1	2			2	1	1	1	4.2951	-0.15103	2	4.2761E-07	1101	160513_QHF_FH_JSI9Kac_4	113.62	76.064		+	1.0142	0.77346	51.771	4	2	Median	1.0368	0.35418	NaN	1	1	Median	0.56325	0.66695	NaN	1	1	Median	0.99202	0.89698	NaN	1	0	Median	1.1467	1.1844	NaN	1	0	Median	61458000	26970000	34488000	6735100	3270300	3464800	2898000	2242200	655800	34677000	14875000	19802000	17148000	6582700	10565000	21046	65	19920	129282;129283;129284;129285;129286	175200;175201;175202;175203;175204	175201			5	
GSSGPTQINQVVSHPNQPLTITAHDDR	0	Unmodified	2868.4114	0.41144615	4958	Q9NRL3	STRN4	Striatin-4	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			54.746	53.194	4	1.5339E-09	44477	160511_QHF_FH_JSI10i_3	70.761	68.321			0.88656	0.98877	6.1685	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88656	0.98877	6.1685	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42276000	22100000	20177000	0	0	0	42276000	22100000	20177000	0	0	0	0	0	0	21047	4958	19921	129287;129288	175205;175206	175206			2	
GSSGSSSKPAGADSTHK	2	Unmodified	1559.7176	0.71757715	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.493	4.493	4	0.012391	2114	160511_QHF_FH_JSI11i_3	41.554	33.643			0.2141	0.19491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2141	0.19491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39369000	35097000	4272300	0	0	0	0	0	0	39369000	35097000	4272300	0	0	0	21048	261	19922	129289	175207	175207			1	
GSSGSSSKPAGADSTHK	2	Acetyl (K)	1601.7281	0.72814183	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13.3	0.471						2	1					1	2	8.1792	0.85346	3	0.0010239	3033	160513_QHF_FH_JSI12Kac_3	60.307	48.693			1.2886	1.3847	23.411	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5406	1.4672	NaN	1	0	Median	1.0628	1.1488	26.405	2	0	Median	13305000	6841800	6463600	0	0	0	0	0	0	2704000	1168800	1535200	10601000	5673000	4928500	21049	261	19922	129290;129291;129292	175208;175209	175209	143		2	
GSSGVGLTAAVLR	0	Unmodified	1186.667	0.66698555	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	53.969	53.222	2	3.8026E-22	47045	160511_QHF_FH_JSI11i_3	175.49	153.4			0.98045	0.94331	11.987	5	1	Median	1.0796	0.92726	NaN	1	1	Median	0.73815	0.88327	21.29	2	0	Median	0.9982	0.94331	NaN	1	0	Median	0.98045	1.009	NaN	1	0	Median	962770000	490940000	471830000	136520000	66149000	70372000	347740000	193470000	154280000	201100000	101770000	99327000	277400000	129550000	147850000	21050	1411	19923	129293;129294;129295;129296;129297	175210;175211;175212;175213;175214	175211			5	
GSSGVGLTAAVTTDQETGER	0	Unmodified	1934.9181	0.91812745	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.138	43.473	2	1.6234E-237	39330	160511_QHF_FH_JSI11i_1	344.3	323.3			0.98856	0.98067	7.7124	4	0	Median	1.2105	1.0018	NaN	1	0	Median	0.74738	0.8793	NaN	1	0	Median	0.96241	0.95994	NaN	1	0	Median	1.0154	1.0551	NaN	1	0	Median	530970000	267250000	263720000	88809000	35920000	52890000	142030000	79801000	62231000	132060000	64946000	67110000	168080000	86587000	81489000	21051	1254	19924	129298;129299;129300;129301	175215;175216;175217;175218;175219;175220;175221	175216			7	
GSSISIQWNSIHQK	1	Unmodified	1583.8056	0.80560429	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			56.919	48.407	3	0.0069893	26711	160513_QHF_FH_JSI10Kac_6	62.287	51.242			1.0431	1.2596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0431	1.2596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21839000	12798000	9040300	0	0	0	21839000	12798000	9040300	0	0	0	0	0	0	21052	400	19925	129302	175222	175222			0	
GSSLCDIAILVVDIMHGLEPQTIESINLLK	1	Unmodified	3277.7302	0.73018602	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.91	98.189	3;4	7.3126E-67	58136	160513_QHF_FH_JSI10Kac_6	184.75	160.66			0.86209	0.99392	2.0823	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86209	0.99392	2.0823	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170930000	94843000	76084000	0	0	0	170930000	94843000	76084000	0	0	0	0	0	0	21053	454	19926	129303;129304	175223;175224;175225;175226	175224			4	
GSSLHVGSDLLK	1	Unmodified	1211.651	0.65100113	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		2	1	42.935	42.208	3	2.8578E-05	36254	160511_QHF_FH_JSI12i_2	72.496	65.523			0.99261	0.97345	26.371	4	3	Median	1.0921	0.96393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1555	1.1148	43.594	2	2	Median	0.90221	0.98307	NaN	1	0	Median	182740000	79417000	103330000	27903000	14498000	13406000	0	0	0	115530000	44123000	71410000	39307000	20797000	18511000	21054	236	19927	129305;129306;129307;129308	175227;175228;175229;175230	175228			4	
GSSLLLMLK	1	Unmodified	960.56779	0.56778878	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.664	74.879	2	2.8991E-07	64945	160511_QHF_FH_JSI12i_3	139.88	105.07			1.0239	1.0898	13.597	4	0	Median	1.285	1.0623	NaN	1	0	Median	0.95818	1.1179	NaN	1	0	Median	0.93355	0.88118	NaN	1	0	Median	1.0941	1.2144	NaN	1	0	Median	131490000	73657000	57834000	19697000	9446200	10251000	18140000	9509300	8630900	22412000	12129000	10284000	71241000	42573000	28668000	21055	5334	19928	129309;129310;129311;129312	175231;175232;175233;175234;175235;175236	175236			6	
GSSLNIMR	0	Unmodified	876.44874	0.44873627	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	28.204	28.181	2	1.6178E-06	23603	160511_QHF_FH_JSI12i_3	147.52	92.994			1.2947	1.2541	0.67279	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3328	1.2482	NaN	1	1	Median	1.2577	1.2601	NaN	1	0	Median	219800000	93509000	126290000	0	0	0	0	0	0	96359000	42013000	54347000	123440000	51496000	71944000	21056	4817	19929	129313;129314	175237;175238;175239	175238			3	
GSSLVLYSDK	1	Unmodified	1067.5499	0.5498901	698	O95470	SGPL1	Sphingosine-1-phosphate lyase 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		47.748	37.307	2	0.013874	22105	160513_QHF_FH_JSI11Kac_4	55.461	46.549			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21057	698	19930	129315	175240	175240			1	
GSSNSYAIK	1	Unmodified	925.45051	0.45051041	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.24	4	3	3		1	3	2	4	2	6	8	4	4	14.216	9.0737	2	1.2008E-32	5368	160513_QHF_FH_JSI9Kac_3	193.38	173.9			1.0047	1.0469	29.366	22	3	Median	1.2808	1.0599	22.889	6	0	Median	0.93291	1.0982	28.968	8	0	Median	1.0231	1.0196	8.6479	4	0	Median	1.0286	1.1006	47.449	4	3	Median	16684000000	7456200000	9227400000	3626700000	1438100000	2188600000	4313600000	2070500000	2243100000	3412900000	1835900000	1576900000	5330400000	2111700000	3218700000	21058	1594	19931	129316;129317;129318;129319;129320;129321;129322;129323;129324;129325;129326;129327;129328;129329;129330;129331;129332;129333;129334;129335;129336;129337	175241;175242;175243;175244;175245;175246;175247;175248;175249;175250;175251;175252;175253;175254;175255;175256;175257;175258;175259;175260;175261;175262;175263;175264	175252			23	
GSSNSYAIKK	2	Unmodified	1053.5455	0.54547343	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	8.2742	8.0529	2;3	1.9622E-07	5903	160511_QHF_FH_JSI10i_3	117.53	80.765			1.0704	1.1514	46.579	9	6	Median	2.2794	1.8504	50.853	2	2	Median	0.95866	1.1164	21.057	2	0	Median	0.9637	0.88755	85.276	2	2	Median	1.0319	1.0386	16.797	3	2	Median	404140000	183280000	220870000	65651000	13712000	51939000	124580000	57009000	67568000	41039000	21905000	19133000	172880000	90651000	82227000	21059	1594	19932	129338;129339;129340;129341;129342;129343;129344;129345;129346	175265;175266;175267;175268;175269;175270;175271;175272;175273;175274	175269			10	
GSSNSYAIKK	2	Acetyl (K)	1095.556	0.55603812	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	1	2	25.937	18.147	2	1.1455E-07	11570	160513_QHF_FH_JSI11Kac_4	142	95.001			0.31743	0.31308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31743	0.31308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17044000	13052000	3992000	0	0	0	0	0	0	17044000	13052000	3992000	0	0	0	21060	1594	19932	129347;129348;129349;129350	175275;175276;175277;175278;175279	175277	1620		5	
GSSPLPTATTPK	1	Unmodified	1155.6136	0.61355299	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.761	28.171	2	9.3776E-05	24944	160511_QHF_FH_JSI10i_1	90.964	76.758			1.0772	0.87353	10.916	4	0	Linear	1.1441	0.94122	NaN	1	0	Median	0.80526	0.93497	NaN	1	0	Median	1.038	0.98354	NaN	1	0	Median	1.1179	1.18	NaN	1	0	Median	289260000	148510000	140750000	75360000	36072000	39288000	86866000	49132000	37734000	65487000	35170000	30317000	61546000	28140000	33407000	21061	4443	19933	129351;129352;129353;129354	175280;175281;175282;175283;175284	175283			5	
GSSPQNTTTPK	1	Unmodified	1116.5411	0.54111633	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		5.999	5.6825	2	3.9672E-07	3423	160511_QHF_FH_JSI9i_1	130.98	92.822			1.0124	0.97943	36.258	3	0	Plateau	1.1505	0.96069	NaN	1	0	Median	1.5345	1.8173	NaN	1	0	Median	1.0124	0.97943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	204930000	91102000	113830000	63446000	26765000	36681000	62283000	22758000	39526000	79200000	41579000	37620000	0	0	0	21062	2787	19934	129355;129356;129357	175285	175285			1	
GSSQLVR	0	Unmodified	745.40825	0.40825167	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		7.8222	7.4588	2	0.0011191	4990	160511_QHF_FH_JSI11i_2	124.34	52.628			0.98291	1.0083	5.1652	3	0	Plateau	1.0761	0.92525	NaN	1	0	Median	0.74133	0.92011	NaN	1	0	Median	0.98291	1.0089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1184800000	621520000	563320000	347500000	172860000	174630000	326100000	185480000	140620000	511240000	263180000	248060000	0	0	0	21063	1837	19935	129358;129359;129360	175286;175287;175288;175289	175287			4	
GSSQSVEIPGGGTEGYHVLR	0	Unmodified	2028.9865	0.98648179	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		64.779	64.779	3	0.057727	57612	160511_QHF_FH_JSI11i_3	14.161	4.4038			0.82899	0.78806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82899	0.78806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65109000	50026000	15083000	0	0	0	0	0	0	65109000	50026000	15083000	0	0	0	21064	4793	19936	129361	175290	175290			1	
GSSSANPVNSVR	0	Unmodified	1173.5738	0.57381344	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.747	14.048	2	3.3518E-05	11332	160511_QHF_FH_JSI9i_1	113.44	97.83			0.73791	0.68299	17.05	2	1	Median	0.95239	0.77051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57174	0.60542	NaN	1	0	Median	78081000	43677000	34404000	42024000	22254000	19770000	0	0	0	0	0	0	36057000	21423000	14634000	21065	4300	19937	129362;129363	175291;175292	175292			1	
GSSSASIVK	1	Unmodified	834.4447	0.44469675	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3616	8.996	2	1.4525E-05	6696	160511_QHF_FH_JSI11i_1	109.48	95.321			0.65535	0.59602	12.359	4	0	Median	0.67817	0.55442	NaN	1	0	Median	0.448	0.53227	NaN	1	0	Median	0.71531	0.69347	NaN	1	0	Median	0.63331	0.64073	NaN	1	0	Median	643700000	366090000	277610000	124500000	74521000	49975000	174810000	107480000	67329000	165340000	87268000	78072000	179060000	96824000	82232000	21066	2493	19938	129364;129365;129366;129367	175293;175294;175295;175296	175293			4	
GSSSDSTAGVKE	1	Unmodified	1123.4993	0.4993111	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	6.9084	3.7687	2	1.8757E-09	3928	160511_QHF_FH_JSI11i_1	119.53	83.133			0.89011	0.97017	13.262	5	1	Median	1.5222	1.2218	NaN	1	1	Median	0.83175	0.97017	NaN	1	0	Median	0.88143	0.84444	NaN	1	0	Median	0.91265	0.98009	1.4493	2	0	Median	150020000	78138000	71882000	39077000	15621000	23455000	47997000	27457000	20540000	1741300	950150	791100	61205000	34109000	27095000	21067	3312	19939	129368;129369;129370;129371;129372;129373	175297;175298;175299;175300;175301	175297			5	
GSSSQAPASK	1	Unmodified	918.44067	0.44067401	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	4										2		2	0.21775	-0.070908	2	0.00064101	41	160511_QHF_FH_JSI12i_1	85.731	61.576			0.70961	0.76119	32.956	4	4	Linear	NaN	NaN	NaN	0	0	Median	1.141	1.2779	39.978	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85904	0.88309	17.161	2	2	Median	52693000	24982000	27711000	0	0	0	22799000	9359600	13439000	0	0	0	29895000	15623000	14272000	21068	4744	19940	129374;129375;129376;129377	175302;175303;175304;175305	175302			4	
GSSYGVTSTESYK	1	Unmodified	1364.6096	0.60958983	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.14	6.2	3					2	2			1		5	1	29.727	24.3	2	1.7332E-07	21747	160511_QHF_FH_JSI12i_1	138.99	122.74			1.1749	1.179	26.644	7	4	Median	1.1749	0.97341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1859	1.179	31.828	5	4	Median	1.1719	1.1914	NaN	1	0	Median	355600000	129610000	225990000	79848000	30029000	49820000	0	0	0	146820000	47901000	98921000	128930000	51682000	77253000	21069	2140	19941	129378;129379;129380;129381;129382;129383;129384	175306;175307;175308;175309;175310;175311;175312;175313	175307			8	
GSSYLGIPFNPSK	1	Unmodified	1365.6929	0.69286595	1802	P53609	PGGT1B	Geranylgeranyl transferase type-1 subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	70.093	69.446	2	3.4186E-05	60790	160511_QHF_FH_JSI11i_2	80.979	68.403			0.64078	0.74188	19.886	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64078	0.74188	NaN	1	0	Median	0.55422	0.54459	NaN	1	0	Median	0.72018	0.78942	NaN	1	1	Median	262280000	150140000	112130000	0	0	0	121070000	69881000	51185000	119560000	68432000	51127000	21653000	11830000	9822600	21070	1802	19942	129385;129386;129387;129388	175314;175315;175316	175316			3	
GSSYSGLLER	0	Unmodified	1067.5247	0.52473799	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.25	5.63		3						1		2		1	1	39.282	36.016	2	0.0013632	31405	160511_QHF_FH_JSI9i_2	66.321	44.873			1.1095	1.0773	14.875	4	0	Median	1.097	0.92197	12.708	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1607	1.1507	NaN	1	0	Median	1.0606	1.1565	NaN	1	0	Median	148240000	66127000	82114000	46033000	18369000	27664000	0	0	0	63871000	29286000	34585000	38337000	18472000	19865000	21071	2832	19943	129389;129390;129391;129392	175317;175318;175319;175320;175321;175322	175319			6	
GSTAENAEYLR	0	Unmodified	1209.5626	0.56258006	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			20.663	19.953	2	0.0015351	17138	160511_QHF_FH_JSI10i_1	95.642	82.686			1.0249	1.0003	6.5613	2	1	Median	1.1684	0.95496	NaN	1	0	Median	0.89911	1.0478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196650000	104700000	91947000	90957000	42623000	48334000	105690000	62082000	43612000	0	0	0	0	0	0	21072	774	19944	129393;129394	175323;175324	175323			2	
GSTAPVGGGAFPTIVER	0	Unmodified	1614.8366	0.83657007	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	1	3	3	63.486	62.677	2;3	2.0044E-10	55043	160511_QHF_FH_JSI9i_2	140.82	124.93			0.77707	0.73345	23.217	10	6	Median	0.87556	0.71409	23.878	3	1	Median	0.47483	0.55107	NaN	1	0	Median	0.61509	0.58571	14.686	3	2	Median	0.77814	0.79999	14.414	3	3	Plateau	609930000	359720000	250210000	114120000	65060000	49063000	103580000	66870000	36715000	203920000	123070000	80857000	188300000	104720000	83577000	21073	2628	19945	129395;129396;129397;129398;129399;129400;129401;129402;129403;129404	175325;175326;175327;175328;175329;175330;175331;175332;175333;175334;175335	175334			11	
GSTAPVGGGAFPTIVEREPWDGR	0	Unmodified	2355.1608	0.16075776	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	76.364	75.589	3	7.7638E-17	63397	160511_QHF_FH_JSI10i_3	133.38	128.29			0.95325	0.92415	31.328	6	1	Median	1.116	0.92549	8.0206	2	0	Median	0.77162	0.92415	4.2891	2	0	Median	0.88929	0.82243	NaN	1	0	Median	1.9204	1.9166	NaN	1	1	Median	627370000	317650000	309720000	145880000	62074000	83803000	340870000	188520000	152350000	114020000	61332000	52689000	26598000	5719800	20878000	21074	2628	19946	129405;129406;129407;129408;129409;129410	175336;175337;175338;175339;175340;175341;175342;175343;175344;175345;175346;175347;175348;175349	175340			14	
GSTAVGVR	0	Unmodified	745.40825	0.40825167	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.43	4	1	1				1			1	1	2	3	7.8891	6.5273	2	9.6129E-07	3727	160513_QHF_FH_JSI11Kac_4	137.18	65.327			1.0036	0.99304	11.135	7	0	Median	1.1224	0.91823	NaN	1	0	Median	0.86381	1.0221	NaN	1	0	Median	1.0189	0.99902	0.84812	2	0	Median	0.88191	0.93626	17.336	3	0	Plateau	3331200000	1719400000	1611700000	448330000	227130000	221200000	836920000	450670000	386250000	742390000	358090000	384300000	1303500000	683520000	620000000	21075	209	19947	129411;129412;129413;129414;129415;129416;129417	175350;175351;175352;175353;175354;175355;175356;175357;175358;175359	175357			10	
GSTDNLMDDIER	0	Unmodified	1364.5878	0.58780853	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	56.397	52.212	2	1.0243E-33	46886	160511_QHF_FH_JSI11i_1	240.85	216.82			0.97831	1.0152	4.6781	5	2	Median	1.2605	1.0152	NaN	1	0	Median	0.79247	0.9372	NaN	1	0	Median	0.99022	0.97156	NaN	1	1	Median	0.96835	1.0423	0.76911	2	1	Median	4580800000	2283700000	2297100000	1297000000	582040000	714930000	11024000	6467500	4556500	1690000000	882020000	808010000	1582800000	813220000	769580000	21076	1721	19948	129418;129419;129420;129421;129422;129423	175360;175361;175362;175363;175364;175365;175366;175367	175360			8	
GSTDNLMDDIER	0	Oxidation (M)	1380.5827	0.58272315	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.66	3					6				2	3	2	2	35.537	28.351	2	1.2649E-15	18316	160513_QHF_FH_JSI11Kac_3	137.17	126.8			0.98624	0.97208	12.208	9	0	Median	1.1877	0.9681	27.949	2	0	Median	0.75435	1.0168	8.3522	3	0	Plateau	0.99429	0.96646	0.81959	2	0	Median	0.99651	1.0726	0.36168	2	0	Median	194800000	94901000	99903000	62256000	26247000	36009000	54660000	29917000	24743000	11336000	6080400	5256100	66551000	32657000	33895000	21077	1721	19948	129424;129425;129426;129427;129428;129429;129430;129431;129432	175368;175369;175370;175371;175372;175373;175374;175375;175376	175371		1397	8	
GSTGFGQDSILSLPGNVGHQDVK	1	Unmodified	2312.1397	0.13968796	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.877	5	3	5							2	2	5	4	72.422	71.94	3	4.0856E-24	64160	160511_QHF_FH_JSI11i_3	148.89	131.74			1.0119	0.98961	28.096	12	8	Median	0.93919	0.77917	24.63	2	1	Median	0.93913	1.1371	27.434	2	0	Median	1.023	0.9875	4.374	5	4	Median	1.001	1.0322	41.848	3	3	Median	2333500000	1174300000	1159200000	189200000	91702000	97502000	346170000	199460000	146720000	1132100000	555540000	576610000	666000000	327650000	338350000	21078	1040	19949	129433;129434;129435;129436;129437;129438;129439;129440;129441;129442;129443;129444;129445	175377;175378;175379;175380;175381;175382;175383;175384;175385;175386;175387;175388;175389;175390;175391;175392;175393;175394	175378			18	
GSTHPQPGVSPPAAPAAPGPK	1	Unmodified	1919.9854	0.98535957	628	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	33.563	32.992	3	9.7209E-10	28756	160511_QHF_FH_JSI11i_3	102.33	98.665			0.91691	0.91021	20.594	7	2	Median	0.91691	0.80453	NaN	1	1	Median	0.72527	0.86649	6.9621	2	0	Median	1.0216	0.97568	32.931	2	1	Median	1.1391	1.1857	0.35557	2	0	Median	303510000	144650000	158860000	33313000	21436000	11877000	80298000	40090000	40207000	76192000	33121000	43071000	113710000	50006000	63703000	21079	628	19950	129446;129447;129448;129449;129450;129451;129452;129453	175395;175396;175397;175398;175399;175400;175401;175402;175403;175404;175405;175406	175395			12	
GSTIETEQK	1	Unmodified	991.4822	0.48220447	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.6116	7.2718	2	6.2104E-23	5206	160511_QHF_FH_JSI12i_1	186.3	134.51			0.89575	0.91237	8.3106	4	0	Median	1.1589	0.94282	NaN	1	0	Median	0.67151	0.78842	NaN	1	0	Median	0.96684	0.93791	NaN	1	0	Median	0.82989	0.88753	NaN	1	0	Median	1341200000	682610000	658540000	288570000	134310000	154260000	354600000	186770000	167840000	337480000	178860000	158620000	360500000	182670000	177830000	21080	3570	19951	129454;129455;129456;129457	175407;175408;175409	175408			1	
GSTIKYLR	1	Acetyl (K)	978.54983	0.54983053	5643	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		44.781	34.457	2	0.012264	19481	160513_QHF_FH_JSI11Kac_5	71.491	42.131			0.2235	0.21961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2235	0.21961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4942400	4022900	919490	0	0	0	0	0	0	4942400	4022900	919490	0	0	0	21081	5643	19952	129458	175410	175410	3513		1	
GSTLDLSDLEAEK	1	Unmodified	1376.6671	0.66710471	166	O00767	SCD	Acyl-CoA desaturase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				1	2	3	3	67.25	62.432	2	4.2732E-82	56023	160511_QHF_FH_JSI11i_1	247.31	230.29			0.85616	0.84624	25.879	8	1	Median	1.2083	0.95485	NaN	1	0	Median	1.0154	1.2088	13.106	2	0	Median	0.85616	0.82139	2.0548	2	1	Median	0.7798	0.82952	25.323	3	0	Median	3494800000	1696900000	1797900000	1045400000	382300000	663060000	652420000	323620000	328800000	883730000	459200000	424530000	913280000	531790000	381480000	21082	166	19953	129459;129460;129461;129462;129463;129464;129465;129466;129467	175411;175412;175413;175414;175415;175416;175417;175418;175419;175420;175421;175422;175423;175424	175411			14	
GSTLSQWSLGNGTPVTSK	1	Unmodified	1818.9112	0.91119158	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0.577	1	4	1							2		2	2	63.059	62.649	2	5.9159E-33	54922	160511_QHF_FH_JSI9i_2	155.98	140.95			0.87688	0.8777	24.31	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76393	0.73908	NaN	1	1	Median	1.0065	1.0423	NaN	1	0	Median	40055000	23902000	16153000	0	0	0	0	0	0	17458000	11158000	6300200	22597000	12744000	9853100	21083	3248	19954	129468;129469;129470;129471;129472;129473	175425;175426;175427;175428;175429;175430;175431	175426			7	
GSTMEEELENITTK	1	Unmodified	1580.724	0.72396766	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	10	5								3	4	5	3	67.424	66.785	2;3	4.7623E-98	59377	160511_QHF_FH_JSI9i_1	257.13	232.79			0.954	0.97321	10.081	15	6	Median	1.1149	0.89882	7.8561	3	0	Median	0.79268	0.93115	16.375	4	2	Median	1.0305	1.0224	7.8604	5	4	Median	0.92642	0.96146	4.3017	3	0	Plateau	2372200000	1227700000	1144600000	338960000	161490000	177470000	731750000	401100000	330650000	660560000	328610000	331950000	640980000	336450000	304520000	21084	1604	19955	129474;129475;129476;129477;129478;129479;129480;129481;129482;129483;129484;129485;129486;129487;129488	175432;175433;175434;175435;175436;175437;175438;175439;175440;175441;175442;175443;175444;175445;175446;175447;175448;175449;175450;175451;175452;175453	175448			22	
GSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNK	1	Unmodified	4290.1208	0.12081378	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	98.273	90.147	3;4;5	3.1265E-226	53901	160513_QHF_FH_JSI10Kac_6	291.47	279.66			0.83139	0.89708	12.39	9	0	Median	1.1444	0.98308	7.2608	2	0	Median	0.75484	0.89708	7.1383	3	0	Plateau	1.1003	1.0558	18.623	2	0	Median	0.81135	0.85435	2.4245	2	0	Median	5625600000	2996400000	2629200000	980510000	420300000	560220000	2588500000	1531500000	1057000000	888120000	419850000	468270000	1168400000	624670000	543740000	21085	1284	19956	129489;129490;129491;129492;129493;129494;129495;129496;129497	175454;175455;175456;175457;175458;175459;175460;175461;175462;175463;175464;175465;175466;175467;175468;175469;175470	175469			17	
GSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNK	1	Oxidation (M)	4306.1157	0.1157284	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	97.678	89.589	4	4.4092E-56	50736	160513_QHF_FH_JSI9Kac_6	151.13	143.58			0.88898	0.98743	17.768	3	0	Median	0.88898	0.74392	NaN	1	0	Median	0.86789	1.0322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.931	0.98743	NaN	1	0	Median	783030000	385540000	397490000	198070000	101300000	96765000	213870000	115470000	98403000	0	0	0	371100000	168780000	202320000	21086	1284	19956	129498;129499;129500	175471;175472;175473;175474;175475;175476	175471		922	6	
GSTPYGGVK	1	Unmodified	864.43413	0.43413207	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.02	4	1	1			2				2	3	1	2	13.633	10.157	2	1.5549E-05	9617	160511_QHF_FH_JSI10i_1	109.01	76.542			0.98887	1.0187	12.7	8	1	Median	1.2119	1.0244	2.835	2	0	Median	0.87316	1.0335	19.955	3	0	Median	1.0275	0.9891	NaN	1	0	Median	0.95197	1.0281	17.034	2	1	Median	4337700000	2085000000	2252700000	1161100000	495330000	665800000	938850000	454140000	484710000	1135600000	547900000	587680000	1102100000	587650000	514490000	21087	1249	19957	129501;129502;129503;129504;129505;129506;129507;129508	175477;175478;175479;175480;175481;175482;175483;175484;175485;175486;175487;175488	175483			11	
GSTPYGGVKLEDLIVK	2	Acetyl (K)	1716.9298	0.92980175	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		86.959	76.46	2	0.035079	40145	160513_QHF_FH_JSI11Kac_5	45.915	30.376			1.0329	0.99415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0329	0.99415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2138500	942690	1195800	0	0	0	0	0	0	2138500	942690	1195800	0	0	0	21088	1249	19958	129509	175489	175489			1	
GSTPYKGDDEGIFISR	1	Unmodified	1740.8319	0.83187862	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	45.376	44.812	3	6.7055E-07	39402	160511_QHF_FH_JSI11i_3	126.77	107.45			0.89205	0.96472	20.443	4	1	Median	1.2517	1.0632	NaN	1	1	Median	0.83611	1.0224	NaN	1	0	Median	0.95174	0.91025	NaN	1	0	Median	0.65283	0.67672	NaN	1	0	Median	194770000	98065000	96701000	29720000	18344000	11376000	44619000	23105000	21515000	80848000	36153000	44696000	39579000	20464000	19115000	21089	2506	19959	129510;129511;129512;129513	175490;175491;175492;175493;175494	175490			5	
GSTPYSQDSAYSSSTTSTSFKPR	1	Unmodified	2441.0983	0.098276659	239	O15047	SETD1A	Histone-lysine N-methyltransferase SETD1A	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			38.553	37.587	3	0.00026023	33037	160511_QHF_FH_JSI10i_2	49.089	41.643			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21090	239	19960	129514	175495	175495			1	
GSTSLLVHPVSGVR	0	Unmodified	1407.7834	0.78341229	414	O60353	FZD6	Frizzled-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			42.631	41.084	2	0.0013349	34338	160511_QHF_FH_JSI10i_3	60.434	45.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21091	414	19961	129515;129516	175496;175497	175496			2	
GSTTATFAAVVLYVENERWDGVPFILR	0	Unmodified	3010.5553	0.55525684	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.329	92.608	3	1.9444E-116	54108	160513_QHF_FH_JSI10Kac_6	242.9	216			0.90547	1.0825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90547	1.0825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	592960000	319180000	273780000	0	0	0	592960000	319180000	273780000	0	0	0	0	0	0	21092	1000	19962	129517	175498	175498			1	
GSTTNDPPK	1	Unmodified	915.42977	0.42977497	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	4.9366	-2.2663	2	0.0017342	1348	160513_QHF_FH_JSI10Kac_2	83.265	51.33			1.0234	1.1183	6.2231	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87417	0.98764	NaN	1	0	Median	1.1054	1.0575	NaN	1	0	Median	1.0234	1.1183	NaN	1	0	Median	6653200	3147500	3505700	0	0	0	1986600	1188400	798210	1996500	875130	1121300	2670100	1084000	1586100	21093	305	19963	129518;129519;129520	175499;175500;175501	175501			3	
GSVAGGAVYLVYDQELLGPSDK	1	Unmodified	2237.1216	0.12157828	3006	Q5XKP0	QIL1	Protein QIL1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.698	91.663	3	7.8325E-05	83073	160511_QHF_FH_JSI10i_1	56.055	41.442			1.274	1.5155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.274	1.5155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36653000	13917000	22735000	0	0	0	36653000	13917000	22735000	0	0	0	0	0	0	21094	3006	19964	129521	175502	175502			1	
GSVAIWSGKPPICEK	2	Unmodified	1627.8392	0.83921261	1078	P15529	CD46	Membrane cofactor protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	54.704	54.034	2;3	1.954E-06	46213	160511_QHF_FH_JSI12i_3	89.403	33.309			0.90695	0.84361	21.165	5	3	Median	1.0376	0.84592	NaN	1	0	Median	0.62818	0.72442	NaN	1	1	Median	0.8438	0.77943	11.19	2	2	Median	1.1871	1.2124	NaN	1	0	Median	643820000	342770000	301050000	87313000	38330000	48983000	114410000	73878000	40533000	309870000	169190000	140680000	132230000	61372000	70857000	21095	1078	19965	129522;129523;129524;129525;129526;129527	175503;175504;175505;175506;175507;175508;175509;175510	175510			8	
GSVDSNWIVGATLEK	1	Unmodified	1574.794	0.79403656	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								2	4	3	2	74.772	74.218	2;3	1.008E-51	66080	160511_QHF_FH_JSI10i_2	257.95	235.75			0.84835	0.893	12.845	11	3	Median	1.0201	0.85426	23.597	2	1	Median	0.72299	0.86521	7.3635	4	2	Median	0.97304	0.96144	8.4678	3	0	Median	0.93361	0.99268	20.531	2	0	Median	1186600000	620370000	566250000	206650000	95460000	111190000	581800000	328230000	253570000	320620000	154790000	165830000	77541000	41890000	35650000	21096	754	19966	129528;129529;129530;129531;129532;129533;129534;129535;129536;129537;129538	175511;175512;175513;175514;175515;175516;175517;175518;175519;175520;175521;175522;175523;175524	175523			13	
GSVGAVPSGTSPGGVATTAAAGSR	0	Unmodified	2014.0079	0.0079455095	3180	Q6ZNB6	NFXL1	NF-X1-type zinc finger protein NFXL1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.205	41.577	2	1.0977E-10	37784	160511_QHF_FH_JSI12i_1	96.163	82.2			0.89464	0.89609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89464	0.89609	NaN	1	0	Median	25059000	14698000	10362000	0	0	0	0	0	0	0	0	0	25059000	14698000	10362000	21097	3180	19967	129539;129540	175525;175526;175527	175526			3	
GSVHSLDAGLLLPSGDPFSK	1	Unmodified	1996.0266	0.026555687	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	86.391	85.586	3	0.025368	73984	160511_QHF_FH_JSI12i_2	30.587	24.464			0.53506	0.5523	2.124	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57334	0.56066	NaN	1	1	Median	0.49934	0.54407	NaN	1	1	Median	26712000	16378000	10335000	0	0	0	0	0	0	10738000	5227800	5509800	15975000	11150000	4824800	21098	2648	19968	129541;129542	175528;175529	175528			2	
GSVISPTELEAPILVPHTAQR	0	Unmodified	2214.2008	0.20083166	3502	Q8N1B4	VPS52	Vacuolar protein sorting-associated protein 52 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.514	81.76	3	1.1757E-06	70814	160511_QHF_FH_JSI12i_2	76.301	71.496			0.91212	0.92687	16.534	4	1	Median	1.0801	0.93383	NaN	1	1	Median	0.90816	1.1215	NaN	1	0	Median	0.91611	0.91996	NaN	1	0	Median	0.68479	0.74845	NaN	1	0	Median	118380000	57299000	61085000	30134000	16848000	13286000	41682000	15280000	26403000	25156000	12940000	12216000	21412000	12232000	9180500	21099	3502	19969	129543;129544;129545;129546	175530;175531;175532;175533;175534;175535	175530			6	
GSVLEPEGTVEIK	1	Unmodified	1356.7137	0.71366097	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.891	52.226	2	0.0001947	47470	160511_QHF_FH_JSI12i_1	80.979	68.403			1.1007	1.1167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1007	1.1167	NaN	1	0	Median	115640000	68412000	47229000	0	0	0	0	0	0	0	0	0	115640000	68412000	47229000	21100	2348	19970	129547	175536;175537	175537			2	
GSVLPNSDK	1	Unmodified	915.46616	0.46616048	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	18.058	14.659	2	0.0012859	12920	160511_QHF_FH_JSI12i_1	69.716	51.68			0.79111	0.68186	28.844	7	0	Median	0.79111	0.63278	NaN	1	0	Median	0.69315	0.81077	34.344	2	0	Median	0.9329	0.91381	44.271	2	0	Median	0.79063	0.84545	30.412	2	0	Median	1166700000	602930000	563790000	245410000	117640000	127780000	314020000	170170000	143850000	300470000	158770000	141700000	306820000	156350000	150470000	21101	1207	19971	129548;129549;129550;129551;129552;129553;129554	175538;175539;175540;175541;175542	175538			5	
GSVLSERDYESLVMMR	0	Unmodified	1870.8917	0.89171846	5038	Q9NVM6	DNAJC17	DnaJ homolog subfamily C member 17	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		72.517	72.517	3	0.056013	64740	160511_QHF_FH_JSI11i_3	24.918	18.511			2.0062	1.9312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0062	1.9312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8083400	1984700	6098700	0	0	0	0	0	0	8083400	1984700	6098700	0	0	0	21102	5038	19972	129555	175543	175543			1	
GSVPLGLATVLQDLLR	0	Unmodified	1650.9669	0.96685596	3771	Q8WUX9	CHMP7	Charged multivesicular body protein 7	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		103.33	103.33	2	4.9124E-05	92417	160511_QHF_FH_JSI11i_3	122.46	116.36			1.0283	0.98889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0283	0.98889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9846600	5990800	3855800	0	0	0	0	0	0	9846600	5990800	3855800	0	0	0	21103	3771	19973	129556	175544	175544			1	
GSVPLSSSPPATHFPDETEITNPVPK	1	Unmodified	2703.3392	0.33917563	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	71.442	70.81	3	2.6047E-13	64391	160511_QHF_FH_JSI11i_1	96.019	88.307			1.1245	0.95747	15.712	3	1	Plateau	1.0066	0.83087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97397	0.95747	NaN	1	1	Median	1.1261	1.1371	NaN	1	0	Median	322100000	133280000	188820000	89301000	45691000	43610000	0	0	0	118230000	37313000	80922000	114560000	50279000	64285000	21104	999	19974	129557;129558;129559	175545;175546;175547	175545			3	
GSVPPPLDQYVK	1	Unmodified	1298.6871	0.68705229	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	65.019	64.317	2	0.0098832	57710	160511_QHF_FH_JSI9i_1	46.819	34.971			0.94508	0.95362	7.0419	3	3	Plateau	1.0094	0.85663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96038	0.91678	NaN	1	1	Median	0.933	0.98615	NaN	1	1	Median	101320000	53551000	47769000	29337000	16274000	13063000	0	0	0	32847000	15596000	17251000	39137000	21681000	17455000	21105	751	19975	129560;129561;129562;129563;129564	175548;175549;175550;175551;175552	175552			5	
GSVQMDSTLQGDMR	0	Unmodified	1523.6708	0.67082665	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.001	41.354	2	3.4643E-06	37332	160511_QHF_FH_JSI11i_1	129.34	93.399			2.1241	2.2313	96.456	4	3	Median	1.3758	1.1147	NaN	1	0	Median	3.2795	3.6394	NaN	1	1	Median	9.5771	9.0311	NaN	1	1	Median	1.3631	1.368	NaN	1	1	Median	83412000	22038000	61374000	13496000	4876000	8620300	19137000	4155000	14981000	23259000	2907600	20352000	27520000	10100000	17421000	21106	1512	19976	129565;129566;129567;129568	175553;175554;175555;175556	175553			4	
GSVQYKK	2	Acetyl (K)	850.45487	0.45486751	1444	P35659	DEK	Protein DEK	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		15.409	7.7889	2	0.0045826	6568	160513_QHF_FH_JSI11Kac_4	95.541	61.899			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4851900	4851900	0	0	0	0	0	0	0	4851900	4851900	0	0	0	0	21107	1444	19977	129569	175557	175557	1426		1	
GSVSNAQQPDLSK	1	Unmodified	1329.6525	0.6524577	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	18.59	18.292	2	2.9209E-41	15849	160511_QHF_FH_JSI12i_1	208.03	181.14			0.76663	0.78118	11.687	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86772	0.84848	NaN	1	0	Median	0.67732	0.71922	NaN	1	0	Median	105570000	56888000	48684000	0	0	0	0	0	0	56056000	28361000	27695000	49516000	28527000	20989000	21108	806	19978	129570;129571	175558;175559;175560	175560			3	
GSVSQPSTPSPPKPTGIFQTSANSSFEPVK	2	Unmodified	3058.5247	0.52474457	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				70.62	69.134	3	0.0006304	56711	160511_QHF_FH_JSI9i_3	38.843	28.96			1.2654	1.0837	NaN	1	1	Median	1.2654	1.0837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8995600	2911600	6084000	8995600	2911600	6084000	0	0	0	0	0	0	0	0	0	21109	235	19979	129572	175561;175562	175561			2	
GSVSSVSPKPPSSFK	2	Unmodified	1489.7777	0.77765821	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		33.816	32.866	3	0.00017368	26698	160511_QHF_FH_JSI9i_3	56.514	51.623			0.84479	0.95579	11.122	3	0	Median	1.1779	0.95579	NaN	1	0	Median	0.81574	0.95768	NaN	1	0	Median	0.84479	0.78911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89000000	39106000	49895000	23987000	8904800	15082000	26879000	12895000	13984000	38135000	17306000	20829000	0	0	0	21110	5154	19980	129573;129574;129575	175563;175564;175565	175564			3	
GSVTLSEIRLPLK	1	Unmodified	1411.8399	0.83986454	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		73.501	72.532	3	0.00089096	59687	160511_QHF_FH_JSI9i_3	58.04	38.965			1.095	1.0149	15.265	3	0	Plateau	1.1348	0.91903	NaN	1	0	Median	0.6553	0.7521	NaN	1	0	Median	1.095	1.0149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109680000	60696000	48981000	36297000	17187000	19110000	32232000	19290000	12942000	41149000	24220000	16929000	0	0	0	21111	4929	19981	129576;129577;129578	175566;175567;175568;175569	175568			4	
GSVVNVNPTNTR	0	Unmodified	1256.6473	0.64731274	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0			By MS/MS		1	0	1											1		26.33	26.139	2	0.0012304	23062	160511_QHF_FH_JSI11i_1	66.595	52.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21112	733;3526	19982	129579	175570	175570			1	
GSVVNVNPTNTRPQSDTPEIRK	1	Unmodified	2408.2408	0.24079899	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			38.961	37.47	4	0.00011899	30566	160511_QHF_FH_JSI9i_3	54.658	49.901			0.9107	0.74392	26.811	2	2	Median	0.9107	0.74392	26.811	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60688000	40935000	19753000	48399000	28646000	19753000	12289000	12289000	0	0	0	0	0	0	0	21113	733	19983	129580;129581;129582	175571;175572;175573	175573			3	
GSWATHK	1	Unmodified	785.38204	0.38203692	1799	P53582	METAP1	Methionine aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			4							2		1	1	5.8635	5.721	2	0.0054888	3293	160511_QHF_FH_JSI12i_3	94.662	72.531			1.0428	0.96186	12.69	3	1	Median	1.0428	0.85693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1468	1.1041	NaN	1	0	Median	0.93316	0.96186	NaN	1	0	Median	617280000	279010000	338280000	135410000	56033000	79373000	0	0	0	170110000	73487000	96623000	311770000	149490000	162280000	21114	1799	19984	129583;129584;129585;129586	175574;175575;175576;175577	175576			4	
GSYGDLGGPIITTQVTIPK	1	Unmodified	1916.0255	0.025493054	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	8	8	8							7	6	5	6	83.441	82.814	2;3	1.1918E-184	75753	160511_QHF_FH_JSI11i_1	321.85	278.76			0.95242	0.97902	28.216	23	4	Plateau	1.1615	0.95715	32.653	7	1	Median	0.85018	0.99254	5.1175	5	0	Median	1.0466	1.0859	29.667	5	1	Median	0.98555	1.0223	31.669	6	2	Median	7060000000	3528000000	3532100000	1169700000	524830000	644840000	2226800000	1211200000	1015600000	1401100000	671050000	730060000	2262500000	1120900000	1141600000	21115	1975	19985	129587;129588;129589;129590;129591;129592;129593;129594;129595;129596;129597;129598;129599;129600;129601;129602;129603;129604;129605;129606;129607;129608;129609;129610	175578;175579;175580;175581;175582;175583;175584;175585;175586;175587;175588;175589;175590;175591;175592;175593;175594;175595;175596;175597;175598;175599;175600;175601;175602;175603;175604;175605;175606;175607;175608;175609;175610;175611;175612;175613;175614;175615;175616;175617;175618;175619;175620;175621;175622;175623;175624;175625;175626;175627;175628;175629;175630;175631;175632	175586			54	
GSYHSLYYSIEK	1	Unmodified	1445.6827	0.68269519	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	3	3	48.983	41.498	2;3	1.1251E-61	22769	160513_QHF_FH_JSI10Kac_6	237.93	209.92			1.0404	1.0472	16.91	10	1	Median	1.2997	1.1187	1.907	2	0	Median	0.80015	0.96503	12.949	2	0	Median	1.1193	1.0705	15.88	3	1	Median	0.8684	0.9158	15.468	3	0	Plateau	407170000	203590000	203580000	103790000	42544000	61246000	114820000	63593000	51228000	102750000	50242000	52511000	85806000	47213000	38593000	21116	3170	19986	129611;129612;129613;129614;129615;129616;129617;129618;129619;129620	175633;175634;175635;175636;175637;175638;175639;175640;175641;175642;175643;175644;175645;175646;175647;175648;175649;175650;175651;175652	175652			20	
GSYNGQVGWFPSNYVTEEGDSPLGDHVGSLSEK	1	Unmodified	3511.5804	0.58042155	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.546	89.546	3	3.1507E-26	79873	160511_QHF_FH_JSI11i_3	101.37	95.465			1.0494	0.96896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0494	0.96896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27752000	15552000	12200000	0	0	0	0	0	0	27752000	15552000	12200000	0	0	0	21117	1095	19987	129621	175653;175654	175654			2	
GSYNPVTHIYTAQDVK	1	Unmodified	1791.8792	0.87916317	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	4	1	46.61	46.154	2;3	6.4541E-08	40641	160511_QHF_FH_JSI10i_2	130.27	96.654			0.59809	0.56807	36.237	7	6	Median	NaN	NaN	NaN	0	0	Median	0.33116	0.40066	17.625	2	2	Median	0.69013	0.65979	26.318	4	4	Median	0.89979	0.91232	NaN	1	0	Median	1149000000	748710000	400240000	0	0	0	493050000	342630000	150430000	517380000	335490000	181900000	138520000	70598000	67917000	21118	860	19988	129622;129623;129624;129625;129626;129627;129628	175655;175656;175657;175658;175659;175660;175661	175659			6	
GSYSIKSR	1	Acetyl (K)	938.48214	0.48214489	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	26.013	17.206	2	0.00015505	11259	160513_QHF_FH_JSI12Kac_4	124.98	86.192			0.79182	0.89022	21.172	6	0	Median	NaN	NaN	NaN	0	0	Median	0.80804	0.95504	3.9403	2	0	Median	0.6247	0.61827	3.7729	2	0	Median	0.81667	0.89022	5.67	2	0	Median	109560000	64007000	45556000	0	0	0	37860000	21831000	16029000	37189000	23998000	13191000	34514000	18179000	16336000	21119	1773	19989	129629;129630;129631;129632;129633;129634	175662;175663;175664;175665;175666;175667;175668;175669;175670	175665	1787		9	
GSYSLSHVYTPNDVR	0	Unmodified	1693.806	0.80599822	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.09		4	8						5	3	5	4	5	46.647	43.55	2;3	2.5769E-65	38426	160511_QHF_FH_JSI10i_2	229.29	203.91			1.1114	1.1118	10.948	15	3	Median	1.2359	1.063	11.525	3	1	Plateau	0.97436	1.1585	17.461	4	1	Median	1.1246	1.1006	2.7873	4	0	Median	1.0055	1.0153	8.0342	4	1	Median	2343700000	1156200000	1187500000	81208000	36463000	44745000	240700000	114730000	125970000	934410000	438560000	495850000	1087400000	566460000	520920000	21120	874	19990	129635;129636;129637;129638;129639;129640;129641;129642;129643;129644;129645;129646;129647;129648;129649;129650;129651	175671;175672;175673;175674;175675;175676;175677;175678;175679;175680;175681;175682;175683;175684;175685;175686;175687;175688;175689;175690;175691;175692;175693	175687			23	
GSYTAQFEHTILLRPTCK	1	Unmodified	2121.0677	0.067708995	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	68.644	59.756	3;4	6.215E-33	32698	160513_QHF_FH_JSI10Kac_6	162.15	142.44			1.0029	1.0863	23.332	7	1	Median	1.1445	0.98391	20.523	2	0	Median	0.88721	1.0492	4.9105	2	0	Median	0.71667	0.67856	NaN	1	1	Median	1.1886	1.2903	3.9237	2	0	Median	283090000	136750000	146340000	45847000	22169000	23678000	172590000	82747000	89844000	28269000	16144000	12126000	36381000	15685000	20696000	21121	1712	19991	129652;129653;129654;129655;129656;129657;129658	175694;175695;175696;175697;175698;175699	175699			6	
GSYVSIHSSGFR	0	Unmodified	1295.6258	0.62584901	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.61		3	8						9	6	6	4	4	35.831	31.329	2;3	1.0726E-127	17444	160513_QHF_FH_JSI11Kac_6	281.89	240.44			1.0041	0.93442	11.447	18	2	Median	1.1721	0.97597	7.6245	6	1	Median	0.76608	0.88697	11.381	4	1	Median	1.03	0.98376	3.4303	4	0	Median	0.81071	0.85041	14.643	4	0	Median	5389600000	2680200000	2709400000	1704700000	773910000	930790000	2159600000	1140200000	1019300000	982050000	468520000	513530000	543290000	297550000	245740000	21122	2474;97	19992	129659;129660;129661;129662;129663;129664;129665;129666;129667;129668;129669;129670;129671;129672;129673;129674;129675;129676;129677;129678	175700;175701;175702;175703;175704;175705;175706;175707;175708;175709;175710;175711;175712;175713;175714;175715;175716;175717;175718;175719;175720;175721;175722;175723;175724;175725;175726;175727;175728;175729;175730;175731;175732;175733;175734;175735;175736;175737;175738;175739;175740;175741	175712			42	
GTAAILEYLR	0	Unmodified	1105.6132	0.61315906	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	74.384	73.661	2	1.3908E-07	65623	160511_QHF_FH_JSI11i_3	120.31	89.694			0.83074	0.9465	23.346	5	1	Median	NaN	NaN	NaN	0	0	Median	0.83074	0.9465	NaN	1	1	Median	0.95632	0.91776	22.94	2	0	Median	0.95571	1.0179	39.283	2	0	Median	268930000	134120000	134810000	0	0	0	11702000	6176800	5525200	138580000	73534000	65049000	118640000	54406000	64237000	21123	4803	19993	129679;129680;129681;129682;129683	175742;175743;175744;175745;175746	175742			3	
GTADAFIVR	0	Unmodified	948.50288	0.50288033	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	2	2	1	41.695	39.376	2	0.00081194	34590	160511_QHF_FH_JSI9i_2	73.665	49.033			1.2859	1.3031	16.004	6	1	Median	1.4512	1.2558	NaN	1	0	Median	0.96133	1.1444	30.89	2	0	Median	1.3962	1.3598	0.80933	2	1	Median	1.1198	1.1789	NaN	1	0	Median	222220000	105390000	116830000	42872000	19105000	23767000	88936000	46040000	42896000	52580000	22765000	29815000	37833000	17477000	20356000	21124	1005	19994	129684;129685;129686;129687;129688;129689	175747;175748;175749	175749			3	
GTADVTHDLQEMK	1	Unmodified	1443.6664	0.6663932	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	42.463	41.619	2	8.3623E-05	35681	160511_QHF_FH_JSI11i_2	98.105	80.296			1.2972	1.1465	27.946	5	0	Median	1.2972	1.1465	NaN	1	0	Median	1.3848	1.7118	NaN	1	0	Median	1.1487	1.1309	24.079	2	0	Median	0.78037	0.84343	NaN	1	0	Median	262970000	122720000	140250000	30968000	14720000	16248000	28544000	11923000	16620000	176570000	84475000	92094000	26890000	11602000	15288000	21125	986	19995	129690;129691;129692;129693;129694	175750;175751;175752;175753;175754;175755;175756	175754			7	
GTAEGAVDAMLLHGQDVITVSNGGR	0	Unmodified	2467.2125	0.21253533	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	84.487	83.671	3	2.5452E-09	72372	160511_QHF_FH_JSI12i_2	91.175	83.371			0.83685	0.807	6.1111	2	2	Median	0.89795	0.77288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7799	0.84264	NaN	1	1	Median	69858000	32630000	37228000	38422000	19284000	19138000	0	0	0	0	0	0	31436000	13346000	18090000	21126	3562	19996	129695;129696	175757;175758	175757			2	
GTAEPQGQK	1	Unmodified	914.44576	0.44575938	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3.75	4.76	3				1						1		3	4.6361	4.3286	2	0.00030496	2235	160511_QHF_FH_JSI12i_1	93.429	57.302			0.75059	0.76923	29.597	3	3	Median	NaN	NaN	NaN	0	0	Median	0.64749	0.75259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95699	0.98837	35.451	2	2	Median	329410000	186900000	142510000	0	0	0	97916000	56574000	41342000	0	0	0	231490000	130320000	101170000	21127	740	19997	129697;129698;129699;129700	175759;175760;175761;175762	175760			4	
GTAFGGWK	1	Unmodified	822.40244	0.40243801	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	37.226	33.873	2	0.00083418	27677	160511_QHF_FH_JSI9i_3	97.602	66.933			1.0707	1.0449	40.465	13	1	Median	1.2237	1.0385	2.1201	3	0	Plateau	0.78378	0.91756	13.159	3	0	Median	1.0051	0.9971	74.641	4	1	Median	1.5155	1.5927	23.259	3	0	Plateau	2084500000	947550000	1137000000	268480000	112870000	155620000	444910000	226510000	218400000	705220000	279560000	425660000	665930000	328610000	337310000	21128	1006	19998	129701;129702;129703;129704;129705;129706;129707;129708;129709;129710;129711;129712;129713	175763;175764;175765;175766;175767;175768;175769;175770;175771;175772;175773;175774;175775	175769			13	
GTAFGGWKSVESVPK	2	Acetyl (K)	1590.8042	0.80420731	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.565	65.901	2	0.0010308	35076	160513_QHF_FH_JSI11Kac_5	108.72	80.512			0.028792	0.028341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.028792	0.028341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1766600	1714900	51725	0	0	0	0	0	0	1766600	1714900	51725	0	0	0	21129	1006	19999	129714	175776	175776	802		1	
GTAFVTLLNGEQAEAAINAFHQSR	0	Unmodified	2544.2721	0.27209912	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.25	5.63			3						1	1	3			96.277	94.684	3	1.4642E-93	45948	160513_QHF_FH_JSI10Kac_6	226.14	199.52			0.83396	0.85356	15.037	4	1	Median	1.079	0.86341	NaN	1	0	Median	0.68033	0.80109	18.111	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176390000	86596000	89791000	30893000	15694000	15199000	145490000	70902000	74592000	0	0	0	0	0	0	21130	3459	20000	129715;129716;129717;129718	175777;175778;175779;175780;175781	175781			5	
GTAITHALTSASTLCQVEPVGR	0	Unmodified	2268.1532	0.15322954	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			66.488	64.999	3	0.0092623	54430	160511_QHF_FH_JSI10i_3	21.606	13.768			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21131	4282	20001	129719	175782	175782			1	
GTALVLAR	0	Unmodified	799.49159	0.49158736	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.26	1	3	1				2	5	2	4	4	5	1	36.4	30.19	2	3.7956E-07	17389	160513_QHF_FH_JSI11Kac_5	143.23	68.813			0.95227	0.14539	87.928	13	3	Linear	0.2206	0.18728	106.29	3	2	Plateau	0.41229	0.49347	108.87	4	0	Median	0.95903	0.89227	75.415	5	1	Median	1.2388	1.362	NaN	1	0	Median	759380000	583000000	176380000	181380000	143670000	37709000	218520000	174190000	44329000	356880000	263920000	92953000	2603100	1211300	1391800	21132	5666	20002	129720;129721;129722;129723;129724;129725;129726;129727;129728;129729;129730;129731;129732;129733	175783;175784;175785;175786;175787;175788;175789;175790;175791;175792;175793;175794;175795;175796	175791			14	
GTAQYSSQK	1	Unmodified	968.45632	0.45632407	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		5.7881	-1.5299	2	0.012257	2034	160513_QHF_FH_JSI11Kac_3	66.621	43.881			0.4804	0.46335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4804	0.46335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2806500	1787500	1019000	0	0	0	0	0	0	2806500	1787500	1019000	0	0	0	21133	4330	20003	129734	175797	175797			1	
GTATFDGTAIANAVVK	1	Unmodified	1534.7991	0.79912193	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			68.732	68.102	2	2.593E-11	61718	160511_QHF_FH_JSI10i_1	154.67	128.66			0.87941	0.86609	0.5212	2	1	Median	1.0678	0.86929	NaN	1	1	Median	0.7243	0.8629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121880000	52630000	69247000	68109000	25889000	42219000	53769000	26741000	27028000	0	0	0	0	0	0	21134	1778	20004	129735;129736	175798;175799	175798			2	
GTAVAICR	0	Unmodified	846.43817	0.43817159	1103	P16615;Q93084	ATP2A2;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	22.861	14.535	2	5.5E-05	10136	160513_QHF_FH_JSI11Kac_4	128.86	83.888			0.88481	0.86609	13.271	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83399	1.0035	NaN	1	0	Median	0.88481	0.86609	NaN	1	0	Median	1.0522	1.1287	NaN	1	0	Median	28878000	15941000	12938000	0	0	0	7895500	4044800	3850700	15232000	9096400	6135400	5751000	2799300	2951700	21135	1103	20005	129737;129738;129739	175800;175801;175802	175801			3	
GTAVFWYNLFASGEGDYSTR	0	Unmodified	2240.0174	0.017447563	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		94.886	86.055	2	0.031543	31414	160513_QHF_FH_JSI11Kac_1	51.211	39.045			0.37594	0.35206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37594	0.35206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1572700	1246600	326050	0	0	0	0	0	0	1572700	1246600	326050	0	0	0	21136	1035	20006	129740	175803	175803			1	
GTAVVNGEFK	1	Unmodified	1020.524	0.52400971	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.93	9	4	3			5	3	2		8	6	5	7	29.386	25.04	1;2	2.6324E-34	16104	160513_QHF_FH_JSI11Kac_4	202.05	139.5			1.027	1.1081	35.34	26	9	Median	1.3271	1.1045	60.994	8	5	Median	0.89958	1.0835	8.5757	6	0	Median	1.0736	1.0769	12.841	5	1	Median	1.0484	1.1275	14.711	7	3	Median	10764000000	4954700000	5809500000	3545500000	1481400000	2064000000	2588500000	1337400000	1251100000	2581900000	1201600000	1380300000	2048300000	934270000	1114100000	21137	1338	20007	129741;129742;129743;129744;129745;129746;129747;129748;129749;129750;129751;129752;129753;129754;129755;129756;129757;129758;129759;129760;129761;129762;129763;129764;129765;129766	175804;175805;175806;175807;175808;175809;175810;175811;175812;175813;175814;175815;175816;175817;175818;175819;175820;175821;175822;175823;175824;175825;175826;175827;175828;175829;175830;175831;175832;175833;175834;175835	175816			31	
GTAYTFFTPGNLK	1	Unmodified	1415.7085	0.70851601	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.36	4	7	6				2	4	4	5	8	7	7	74.13	70.383	2;3	2.0017E-116	62028	160511_QHF_FH_JSI12i_3	318.89	288.63			1.021	1.0632	12.831	26	2	Median	1.0712	0.91501	9.4387	5	0	Median	0.79804	0.93765	12.966	8	1	Median	1.1704	1.134	13.92	6	0	Median	1.0168	1.1308	4.5732	7	1	Median	4145800000	2066400000	2079400000	515070000	267290000	247780000	884400000	523810000	360590000	1443600000	657350000	786260000	1302700000	617970000	684730000	21138	3893	20008	129767;129768;129769;129770;129771;129772;129773;129774;129775;129776;129777;129778;129779;129780;129781;129782;129783;129784;129785;129786;129787;129788;129789;129790;129791;129792;129793	175836;175837;175838;175839;175840;175841;175842;175843;175844;175845;175846;175847;175848;175849;175850;175851;175852;175853;175854;175855;175856;175857;175858;175859;175860;175861;175862;175863;175864;175865;175866;175867;175868;175869;175870;175871;175872;175873	175868			37	
GTAYVVYEDIFDAK	1	Unmodified	1589.7613	0.76133944	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	2	4	1	86.233	85.621	2	3.5017E-06	73904	160511_QHF_FH_JSI12i_2	125.28	101.53			0.76889	0.76297	23.223	6	5	Median	0.9382	0.79246	NaN	1	0	Median	0.52872	0.64711	NaN	1	1	Median	0.64339	0.65398	31.749	3	3	Plateau	0.81998	0.91835	NaN	1	1	Median	343940000	188880000	155060000	52940000	22424000	30516000	44402000	28994000	15408000	176520000	98274000	78241000	70082000	39191000	30890000	21139	5574	20009	129794;129795;129796;129797;129798;129799;129800;129801	175874;175875;175876;175877;175878;175879;175880;175881;175882;175883;175884;175885;175886;175887	175875			14	
GTDDFDFAGSFQGPR	0	Unmodified	1615.6903	0.69029976	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.83	69.281	2	2.3122E-06	62794	160511_QHF_FH_JSI10i_1	124.21	117.67			1.1188	1.1784	12.505	4	3	Median	1.5696	1.298	NaN	1	0	Median	0.93695	1.0891	NaN	1	1	Median	1.0446	1.0023	NaN	1	1	Median	1.1983	1.2751	NaN	1	1	Median	142000000	69302000	72694000	23932000	8021400	15910000	49619000	26537000	23082000	32212000	16358000	15854000	36233000	18386000	17847000	21140	2213	20010	129802;129803;129804;129805	175888;175889;175890;175891	175890			4	
GTDDSMTLQSQK	1	Unmodified	1309.582	0.58199487	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.051	18.554	2	7.9929E-149	16033	160511_QHF_FH_JSI12i_1	304.63	274.37			1.57	1.592	23.583	4	0	Median	1.5376	1.2821	NaN	1	0	Median	1.8901	2.2647	NaN	1	0	Median	1.6032	1.5702	NaN	1	0	Median	1.5083	1.6141	NaN	1	0	Median	1006800000	382210000	624570000	211620000	91206000	120420000	265830000	103440000	162390000	254850000	84991000	169860000	274470000	102570000	171900000	21141	130	20011	129806;129807;129808;129809	175892;175893;175894;175895;175896;175897	175893			6	
GTDDSMTLQSQK	1	Oxidation (M)	1325.5769	0.57690949	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1						2	1	3	14.889	13.374	2	2.08E-08	4148	160513_QHF_FH_JSI11Kac_2	115.18	59.608			0.86531	0.91044	27.849	6	4	Median	NaN	NaN	NaN	0	0	Median	0.89619	1.0394	44.014	2	1	Median	1.4217	1.3346	NaN	1	0	Median	0.86531	0.91756	13.055	3	3	Plateau	188370000	99574000	88799000	0	0	0	67829000	38213000	29616000	4586500	2144600	2442000	115960000	59217000	56742000	21142	130	20011	129810;129811;129812;129813;129814;129815	175898;175899;175900;175901;175902;175903;175904	175898		59	7	
GTDIMYTGTLDCWR	0	Unmodified	1687.7334	0.73342691	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	73.819	73.083	2	1.6676E-21	63016	160511_QHF_FH_JSI12i_2	176.8	171.31			1.0364	1.0447	13.851	5	0	Median	1.2002	1.0447	NaN	1	0	Median	0.93724	1.1143	11.803	2	0	Median	0.82261	0.85279	NaN	1	0	Median	1.0708	1.1742	NaN	1	0	Median	334460000	179130000	155330000	32007000	16513000	15494000	147430000	79717000	67713000	92051000	52076000	39975000	62970000	30820000	32149000	21143	826	20012	129816;129817;129818;129819;129820	175905;175906;175907;175908;175909;175910;175911;175912;175913;175914;175915;175916	175906			12	
GTDIMYTGTLDCWRK	1	Unmodified	1815.8284	0.82838993	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							1	3	4	5	63.542	63.017	2;3	3.0436E-23	54577	160511_QHF_FH_JSI12i_3	183	167.6			1.1203	1.2065	19.787	9	2	Median	1.293	1.1121	NaN	1	0	Median	1.3695	1.7091	NaN	1	0	Median	1.1699	1.1394	23.236	4	1	Median	1.1046	1.2065	7.5692	3	1	Median	1379700000	657310000	722370000	49123000	21106000	28017000	170610000	60627000	109980000	503560000	234950000	268610000	656380000	340630000	315760000	21144	826	20013	129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831;129832;129833	175917;175918;175919;175920;175921;175922;175923;175924;175925;175926;175927;175928;175929;175930;175931;175932;175933;175934;175935;175936	175933			19	
GTDRLDLPVTTR	0	Unmodified	1342.7205	0.72047768	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	1		By MS/MS	By matching		2.67	0.471		1	2								2	1		41.712	40.879	3	0.027222	35974	160511_QHF_FH_JSI10i_2	42.785	36.579			1.2265	1.1461	23.353	3	1	Median	NaN	NaN	NaN	0	0	Median	1.155	1.3508	30.177	2	1	Median	1.2265	1.1461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152280000	75737000	76546000	0	0	0	102590000	50894000	51700000	49689000	24843000	24846000	0	0	0	21145	3915	20014	129834;129835;129836	175937;175938;175939	175939			3	
GTDSQAMEEEKPEGHV	1	Unmodified	1742.7417	0.74174299	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	21.185	20.631	2;3	1.9741E-41	17673	160511_QHF_FH_JSI9i_1	171.26	167.42			1.5218	1.2644	23.223	7	0	Linear	1.4339	1.1953	18.376	2	0	Median	1.2787	1.4788	NaN	1	0	Median	1.1006	1.0572	42.89	2	0	Median	1.083	1.1265	16.327	2	0	Median	542880000	243370000	299510000	153880000	63725000	90153000	86335000	41778000	44557000	149670000	70866000	78808000	152990000	67002000	85992000	21146	2419	20015	129837;129838;129839;129840;129841;129842;129843;129844	175940;175941;175942;175943;175944;175945;175946;175947;175948;175949;175950;175951;175952;175953;175954	175954			15	
GTDTQTPAVLSPSK	1	Unmodified	1400.7147	0.7147236	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	3.85	6				1					2	1	1	3	33.772	33.063	2	2.1551E-15	29494	160511_QHF_FH_JSI10i_1	203.61	177.57			0.83705	0.79653	29.064	6	3	Median	0.84587	0.69946	12.01	2	2	Median	0.70395	0.83322	NaN	1	0	Median	0.9016	0.89005	NaN	1	0	Median	0.89068	0.91206	57.251	2	1	Median	539420000	286840000	252590000	178070000	89554000	88517000	110900000	71075000	39824000	111020000	57089000	53933000	139430000	69117000	70316000	21147	1580	20016	129845;129846;129847;129848;129849;129850;129851	175955;175956;175957;175958;175959;175960;175961;175962;175963;175964	175960			10	
GTDTVAGLALIK	1	Unmodified	1157.6656	0.66558856	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.24	4	3				2	4	1		3	4	3	4	70.319	65.593	2	4.3451E-16	59999	160511_QHF_FH_JSI12i_1	163.64	123.29			0.92979	0.90526	17.51	12	0	Median	0.97473	0.81081	5.495	2	0	Median	0.74179	0.87008	8.6492	4	0	Median	1.0292	1.003	23.77	3	0	Median	0.96533	1.0189	4.4903	3	0	Median	969450000	520140000	449310000	192110000	100960000	91154000	271010000	165250000	105770000	254710000	118910000	135800000	251610000	135020000	116590000	21148	1566	20017	129852;129853;129854;129855;129856;129857;129858;129859;129860;129861;129862;129863;129864;129865	175965;175966;175967;175968;175969;175970;175971;175972;175973;175974;175975;175976;175977;175978;175979;175980	175968			15	
GTDVASFVK	1	Unmodified	922.476	0.47599688	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.33	6.13	2						1			1		1	1	39.586	38.677	2	0.00011395	34204	160511_QHF_FH_JSI9i_1	110.41	72.275			1.5561	1.4582	17.962	2	2	Median	1.5328	1.2843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5797	1.6557	NaN	1	1	Median	240310000	90107000	150200000	78861000	32374000	46487000	0	0	0	0	0	0	161450000	57733000	103720000	21149	1772	20018	129866;129867;129868	175981;175982;175983	175983			3	
GTDVNVFNTILTTR	0	Unmodified	1549.81	0.81002097	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	6.13	5	8	4				2	4	2	6	8	5	6	85.46	82.275	2;3	2.6367E-177	74984	160511_QHF_FH_JSI11i_2	315.11	286.71			0.99488	0.99034	11.147	24	1	Median	1.1794	0.987	3.6689	6	0	Median	0.77994	0.90575	10.683	8	1	Median	1.0468	1.0374	6.9342	5	0	Median	0.98242	1.0852	8.6755	5	0	Median	5521800000	2774600000	2747200000	856310000	391350000	464950000	1444100000	805340000	638740000	1760000000	863600000	896430000	1461400000	714280000	747100000	21150	805	20019	129869;129870;129871;129872;129873;129874;129875;129876;129877;129878;129879;129880;129881;129882;129883;129884;129885;129886;129887;129888;129889;129890;129891;129892;129893	175984;175985;175986;175987;175988;175989;175990;175991;175992;175993;175994;175995;175996;175997;175998;175999;176000;176001;176002;176003;176004;176005;176006;176007;176008;176009;176010;176011;176012;176013;176014;176015;176016;176017;176018;176019;176020;176021;176022;176023;176024;176025;176026;176027;176028;176029;176030;176031	176016			48	
GTDVPKWISIMTER	1	Acetyl (K)	1673.8447	0.84469192	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	1			By MS/MS		16	0									1			1		90.137	80.788	3	0.020858	45211	160513_QHF_FH_JSI11Kac_6	45.14	26.082			0.17716	0.17497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17716	0.17497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13164000	11811000	1353200	0	0	0	0	0	0	13164000	11811000	1353200	0	0	0	21151	870	20020	129894	176032	176032	575		1	
GTDYQLSK	1	Unmodified	910.43961	0.43961137	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	18.456	15.052	2	0.00021625	13001	160511_QHF_FH_JSI12i_1	119.21	68.152			0.85403	0.9425	15.056	7	0	Median	1.1744	0.97247	NaN	1	0	Median	0.90862	1.0671	17.555	2	0	Median	0.82201	0.80753	13.68	2	0	Median	0.83894	0.89943	6.8422	2	0	Median	2149600000	1068600000	1081000000	514800000	225810000	288990000	582190000	334960000	247230000	482060000	235930000	246130000	570550000	271910000	298640000	21152	1823	20021	129895;129896;129897;129898;129899;129900;129901	176033;176034;176035;176036;176037;176038;176039;176040;176041;176042;176043;176044;176045	176035			13	
GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK	1	Unmodified	3314.5426	0.54263906	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			57.606	56.72	4	0.0068844	50167	160511_QHF_FH_JSI10i_2	31.78	25.75			1.0718	1.3107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0718	1.3107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35080000	13878000	21202000	0	0	0	35080000	13878000	21202000	0	0	0	0	0	0	21153	2366	20022	129902	176046	176046			1	
GTEASSGTEAATGLEGEEK	1	Unmodified	1822.8068	0.80684567	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	28.096	27.514	2;3	3.1699E-160	24309	160511_QHF_FH_JSI11i_1	303.02	286.77			0.94472	0.8931	6.7386	5	1	Median	1.0259	0.82427	NaN	1	0	Median	0.77431	0.92267	NaN	1	0	Median	0.96107	0.8931	NaN	1	0	Median	0.89977	0.92739	8.9363	2	1	Median	331570000	162450000	169110000	59783000	27138000	32645000	75544000	45239000	30306000	68051000	32402000	35649000	128190000	57675000	70513000	21154	3460	20023	129903;129904;129905;129906;129907	176047;176048;176049;176050;176051;176052;176053;176054;176055;176056;176057	176049			11	
GTEDEVEK	1	Unmodified	905.39781	0.39780614	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	1	3	2	7.8848	4.5918	2	0.00016011	4213	160511_QHF_FH_JSI9i_1	123.98	16.088		+	0.95715	0.97768	26.927	7	0	Median	1.072	0.88049	NaN	1	0	Median	0.95715	1.1454	NaN	1	0	Median	1.0944	1.0523	34.156	3	0	Median	0.80301	0.8487	20.008	2	0	Median	375730000	200350000	175380000	122630000	59900000	62730000	77552000	42713000	34839000	77267000	37701000	39566000	98285000	60038000	38247000	21155	73;886	20024	129908;129909;129910;129911;129912;129913;129914	176058;176059;176060;176061;176062;176063;176064	176064			6	
GTEDEVEKYSESVK	2	Acetyl (K)	1640.7417	0.74172621	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	1	0	0	1			By MS/MS	By MS/MS	12.8	0.433					1	3						3	1	54.9	45.465	2	0.006761	24514	160513_QHF_FH_JSI11Kac_3	67.153	34.547		+	0.91505	0.94252	50.91	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6449	0.65758	NaN	1	1	Median	1.2984	1.3509	NaN	1	1	Median	8459700	5178200	3281400	0	0	0	0	0	0	7336700	4451500	2885200	1123000	726730	396250	21156	73;886	20025	129915;129916;129917;129918	176065;176066;176067;176068	176067	49		4	
GTEDFIVESLDASFR	0	Unmodified	1684.7944	0.79443049	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	100.18	100.05	2;3	4.5214E-98	90811	160511_QHF_FH_JSI11i_1	262.56	251.8			1.0282	0.96375	11.618	16	0	Median	1.1038	0.93908	5.2279	4	0	Median	0.75328	0.88681	6.049	4	0	Median	1.0017	1.0852	7.6689	4	0	Linear	0.95565	1.0125	16.995	4	0	Median	1178100000	595430000	582630000	188360000	89907000	98448000	382340000	200890000	181440000	290330000	141770000	148550000	317040000	162860000	154190000	21157	1559	20026	129919;129920;129921;129922;129923;129924;129925;129926;129927;129928;129929;129930;129931;129932;129933;129934	176069;176070;176071;176072;176073;176074;176075;176076;176077;176078;176079;176080;176081;176082;176083;176084;176085;176086;176087;176088;176089;176090;176091;176092;176093;176094;176095	176071			27	
GTEDITSPHGIPLDLLDR	0	Unmodified	1947.9902	0.99017018	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							1	2	4	4	83.121	82.389	2;3	3.2742E-23	72542	160511_QHF_FH_JSI11i_2	172.23	147.44			1.1239	1.1532	11.699	10	3	Median	1.2469	1.0598	NaN	1	0	Median	0.82932	1.0163	10.483	2	1	Median	1.1544	1.1741	4.7349	3	0	Median	1.1022	1.2282	11.539	4	2	Median	1815600000	852660000	962960000	308080000	135140000	172940000	370180000	198710000	171470000	592690000	259210000	333490000	544670000	259610000	285060000	21158	5496	20027	129935;129936;129937;129938;129939;129940;129941;129942;129943;129944;129945	176096;176097;176098;176099;176100;176101;176102;176103;176104;176105;176106;176107;176108;176109;176110	176109			15	
GTEELYAIK	1	Unmodified	1022.5284	0.52842638	1112	P17252	PRKCA	Protein kinase C alpha type	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.166	39.554	2	0.00071654	35924	160511_QHF_FH_JSI12i_1	86.332	63.84			0.36938	0.38291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36938	0.38291	NaN	1	1	Median	52909000	36124000	16786000	0	0	0	0	0	0	0	0	0	52909000	36124000	16786000	21159	1112	20028	129946	176111	176111			1	
GTEFFLK	1	Unmodified	840.43815	0.43815481	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	51.297	50.127	2	0.013992	42968	160511_QHF_FH_JSI12i_2	68.312	41.145			0.46386	0.54236	48.75	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31873	0.38422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67507	0.76559	NaN	1	1	Median	109230000	67110000	42117000	0	0	0	56931000	38461000	18470000	0	0	0	52296000	28649000	23647000	21160	4217	20029	129947;129948	176112;176113	176112			2	
GTEFGIDYNSWEVGPK	1	Unmodified	1797.821	0.82097959	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	79.907	79.566	2	8.2803E-30	72458	160511_QHF_FH_JSI12i_1	184.1	170.43			1.0744	1.0959	18.261	3	2	Median	NaN	NaN	NaN	0	0	Median	0.72366	0.83858	NaN	1	1	Median	1.2286	1.1889	NaN	1	1	Median	1.0744	1.0959	NaN	1	0	Median	93885000	50364000	43521000	0	0	0	27513000	17443000	10070000	33692000	14498000	19194000	32680000	18423000	14257000	21161	5553	20030	129949;129950;129951;129952;129953	176114;176115;176116;176117;176118	176115			5	
GTEGMEPEEGVTVESQPQVK	1	Unmodified	2129.9787	0.9786788	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.52	45.844	2	1.7626E-54	41647	160511_QHF_FH_JSI12i_1	220.19	211.46			1.0203	0.9409	13.593	4	0	Median	1.1079	0.91119	NaN	1	0	Median	0.73151	0.86924	NaN	1	0	Median	1.2404	1.1839	NaN	1	0	Median	0.9397	0.97158	NaN	1	0	Median	136700000	69503000	67196000	27117000	10834000	16283000	36609000	15173000	21436000	37902000	20859000	17043000	35071000	22637000	12434000	21162	293	20031	129954;129955;129956;129957;129958	176119;176120;176121;176122;176123;176124;176125;176126;176127	176123			9	
GTEGWESAATQTK	1	Unmodified	1364.6208	0.62082322	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.913	27.708	2	0.00089691	24583	160511_QHF_FH_JSI11i_1	65.179	53.004			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21163	5464	20032	129959	176128	176128			1	
GTEISSGAASK	1	Unmodified	1006.4931	0.49310351	4859	Q9HCJ3	RAVER2	Ribonucleoprotein PTB-binding 2	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		11.32	3.9907	2	0.023169	4696	160513_QHF_FH_JSI11Kac_3	46.001	10.557			0.51332	0.487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51332	0.487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2207800	1282900	924950	0	0	0	0	0	0	2207800	1282900	924950	0	0	0	21164	4859	20033	129960	176129	176129			1	
GTEITHAVVIK	1	Unmodified	1166.6659	0.66592292	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.41	1	10	2				5	8	6	7	9	8	8	38.259	31.843	2;3	5.3007E-24	27403	160511_QHF_FH_JSI9i_2	156.51	137.26			0.95596	1.0039	25.872	29	3	Median	1.2746	1.0805	26.688	7	1	Median	0.87479	1.0318	21.351	8	0	Median	0.98083	0.98122	4.0576	8	0	Median	0.91696	0.99591	45.802	6	2	Median	2439400000	1254100000	1185300000	511520000	234910000	276610000	565660000	302420000	263240000	778540000	430580000	347970000	583630000	286190000	297450000	21165	40	20034	129961;129962;129963;129964;129965;129966;129967;129968;129969;129970;129971;129972;129973;129974;129975;129976;129977;129978;129979;129980;129981;129982;129983;129984;129985;129986;129987;129988;129989;129990;129991;129992	176130;176131;176132;176133;176134;176135;176136;176137;176138;176139;176140;176141;176142;176143;176144;176145;176146;176147;176148;176149;176150;176151;176152;176153;176154;176155;176156;176157;176158;176159;176160;176161;176162;176163;176164;176165;176166;176167;176168;176169;176170;176171;176172;176173	176146			44	
GTEITHAVVIKK	2	Acetyl (K)	1336.7715	0.77145062	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	1	0	0	1			By MS/MS		15	0								2				2		47.77	37.285	2;3	6.0342E-05	20932	160513_QHF_FH_JSI11Kac_5	104.17	86.303			0.3361	0.32981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3361	0.32981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11444000	8929500	2514500	0	0	0	0	0	0	11444000	8929500	2514500	0	0	0	21166	40	20035	129993;129994	176174;176175;176176	176176	10		3	
GTEITHAVVIKK	2	Unmodified	1294.7609	0.76088593	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1				By MS/MS	3	0			2										2	24.011	23.985	3	0.00026079	19789	160511_QHF_FH_JSI12i_3	76.24	65.027			0.37699	0.38198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37699	0.38198	NaN	1	1	Median	140520000	99116000	41404000	0	0	0	0	0	0	0	0	0	140520000	99116000	41404000	21167	40	20035	129995;129996	176177;176178	176177			2	
GTELDDGIQADSGPINDTDANPR	0	Unmodified	2370.0571	0.057140126	1853	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.948	53.284	2	3.1468E-269	48345	160511_QHF_FH_JSI12i_1	354.12	334.52			0.56527	0.73938	20.867	4	0	Linear	0.93295	0.80001	NaN	1	0	Median	0.57992	0.68334	NaN	1	0	Median	0.61748	0.60021	NaN	1	0	Median	0.95055	0.97379	NaN	1	0	Median	160420000	91668000	68754000	37381000	21546000	15835000	46430000	30325000	16105000	42941000	22345000	20595000	33671000	17452000	16219000	21168	1853	20036	129997;129998;129999;130000	176179;176180;176181;176182;176183;176184;176185	176181			7	
GTENEDAGSDYQSDNQASWIHR	0	Unmodified	2479.0272	0.027236981	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								2	5	4	3	38.974	38.299	3	2.2873E-34	34980	160511_QHF_FH_JSI12i_1	154.42	142.96			1.0102	1.1111	24.789	10	5	Median	1.6159	1.3755	3.739	2	1	Median	0.9023	1.0888	15.618	4	3	Median	1.1484	1.1273	31.662	3	1	Plateau	1.0581	1.1559	NaN	1	0	Median	602770000	288490000	314280000	70943000	21200000	49743000	326400000	161820000	164590000	184000000	96038000	87959000	21423000	9432600	11991000	21169	1604	20037	130001;130002;130003;130004;130005;130006;130007;130008;130009;130010;130011;130012;130013;130014	176186;176187;176188;176189;176190;176191;176192;176193;176194;176195;176196;176197;176198;176199;176200;176201;176202;176203;176204;176205;176206;176207;176208	176191			23	
GTENGVNGTLTSNVADSPR	0	Unmodified	1887.8922	0.89224705	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	37.446	36.718	2	2.7182E-54	33248	160511_QHF_FH_JSI12i_1	222.75	203.09			1.0523	1.0566	22.761	3	1	Plateau	1.2838	1.0566	NaN	1	1	Median	1.2336	1.4358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89769	0.92035	NaN	1	0	Median	85114000	41474000	43640000	22171000	8164100	14007000	29034000	14393000	14641000	0	0	0	33909000	18917000	14992000	21170	2687	20038	130015;130016;130017;130018;130019	176209;176210;176211;176212;176213;176214;176215	176212			7	
GTEPFVTGVR	0	Unmodified	1061.5506	0.55055881	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	37.978	37.181	2	1.0811E-05	31716	160511_QHF_FH_JSI11i_2	104.2	53.497			0.78149	0.90677	23.25	6	0	Median	1.3271	1.1045	NaN	1	0	Median	0.7212	0.85473	18.383	2	0	Median	1.0009	1.0139	NaN	1	0	Median	0.65767	0.70393	25.785	2	0	Median	465670000	258210000	207460000	68547000	30743000	37804000	147040000	86575000	60470000	111340000	54134000	57204000	138740000	86761000	51983000	21171	1814	20039	130020;130021;130022;130023;130024;130025	176216;176217;176218;176219;176220;176221;176222;176223;176224	176223			9	
GTEPPFSGIYLNNK	1	Unmodified	1535.762	0.76200815	5585	Q9Y3D2	MSRB2	Methionine-R-sulfoxide reductase B2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			65.709	65.376	2	0.0011541	59219	160511_QHF_FH_JSI10i_1	79.659	60.203			0.67464	0.76426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67464	0.76426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23239000	14336000	8902800	0	0	0	23239000	14336000	8902800	0	0	0	0	0	0	21172	5585	20040	130026;130027	176225;176226;176227	176226			3	
GTEQYQSK	1	Unmodified	939.42977	0.42977497	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.2493	4.6732	2	0.0069196	2530	160511_QHF_FH_JSI9i_1	70.332	40.257			1.3854	1.1279	NaN	1	1	Median	1.3854	1.1279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68109000	25518000	42591000	68109000	25518000	42591000	0	0	0	0	0	0	0	0	0	21173	1670	20041	130028	176228	176228			1	
GTESISK	1	Unmodified	720.36538	0.3653838	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.2736	2.9758	2	0.0014846	2502	160513_QHF_FH_JSI11Kac_3	107.59	36.452			0.92112	0.97224	31.608	7	1	Median	1.3806	1.124	NaN	1	1	Median	0.7635	0.90353	10.364	2	0	Median	1.1942	1.1735	37.792	2	0	Median	0.7891	0.85108	55.64	2	0	Median	3231700000	1708700000	1523000000	664920000	288450000	376470000	858620000	536350000	322270000	820330000	405780000	414550000	887860000	478120000	409740000	21174	2158	20042	130029;130030;130031;130032;130033;130034;130035	176229;176230;176231;176232;176233	176230			5	
GTESVTEEK	1	Unmodified	978.45057	0.45056999	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.7215	7.3739	2	2.1294E-06	5119	160511_QHF_FH_JSI11i_1	141.2	77.716			1.0031	1.0292	17.39	4	2	Median	1.2754	1.0478	NaN	1	0	Median	0.86521	1.011	NaN	1	1	Median	1.1629	1.1224	NaN	1	1	Median	0.7368	0.75645	NaN	1	0	Median	492000000	243350000	248650000	108860000	48865000	59991000	140230000	74294000	65931000	108920000	51664000	57260000	133990000	68523000	65466000	21175	1529	20043	130036;130037;130038;130039	176234;176235;176236;176237;176238	176234			5	
GTEVQVDDIK	1	Unmodified	1102.5506	0.55061839	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					1	4	2	1	33.385	29.819	2	5.1076E-55	26452	160511_QHF_FH_JSI11i_1	213.31	149.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21176	5487	20044	130040;130041;130042;130043;130044;130045;130046;130047	176239;176240;176241;176242;176243;176244;176245;176246	176239			8	
GTFADKEK	2	Acetyl (K)	936.45526	0.45526144	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	24.058	16.714	2	0.00097128	10215	160513_QHF_FH_JSI12Kac_3	108.74	55.188			1.1665	1.2216	37.347	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9493	0.93808	NaN	1	0	Median	1.4333	1.5908	NaN	1	0	Median	29640000	10158000	19482000	0	0	0	0	0	0	14836000	5255700	9580200	14804000	4902300	9902200	21177	906	20045	130048;130049	176247	176247	663		1	
GTFDNAETK	1	Unmodified	981.44034	0.44033966	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	11.352	10.898	2	0.037802	8644	160511_QHF_FH_JSI11i_1	59.35	37.902			1.3058	1.2555	8.0515	3	1	Median	1.5359	1.2555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1947	1.1576	NaN	1	0	Median	1.3058	1.3598	NaN	1	1	Median	273860000	122820000	151040000	101300000	43096000	58201000	0	0	0	97461000	44287000	53173000	75105000	35437000	39668000	21178	2517	20046	130050;130051;130052	176248;176249	176248			1	
GTFDNAETKK	2	Unmodified	1109.5353	0.53530267	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							2		1	1	8.8812	8.6182	2;3	5.3179E-05	6029	160511_QHF_FH_JSI12i_3	92.538	69.798			1.0092	0.9446	34.888	4	2	Median	1.5478	1.3282	25.609	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75568	0.73831	NaN	1	1	Median	0.78432	0.80514	NaN	1	0	Median	180610000	98923000	81684000	94460000	42601000	51859000	0	0	0	49088000	32719000	16369000	37060000	23603000	13456000	21179	2517	20047	130053;130054;130055;130056	176250;176251;176252;176253;176254	176253			5	
GTFESGLK	1	Unmodified	837.42323	0.42323303	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	2	2								2		2		22.144	21.484	2	0.012937	18566	160511_QHF_FH_JSI9i_2	52.786	22.979			0.73563	0.66821	16.818	4	0	Median	0.86535	0.72958	25.264	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67111	0.66821	11.535	2	0	Median	NaN	NaN	NaN	0	0	Median	601990000	291480000	310510000	225270000	112710000	112560000	0	0	0	376720000	178770000	197950000	0	0	0	21180	5223	20048	130057;130058;130059;130060	176255	176255			1	
GTFGIPLWVQVLGPLIGVQVPEEK	1	Unmodified	2575.4414	0.44139628	949	P0CG30	GSTT2B	Glutathione S-transferase theta-2B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.09	94.636	3	2.263E-13	56911	160513_QHF_FH_JSI10Kac_6	94.542	84.693			0.61659	0.625	44.617	2	1	Median	0.53204	0.45589	NaN	1	1	Median	0.71458	0.85683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147890000	92438000	55453000	24572000	18515000	6056500	123320000	73923000	49396000	0	0	0	0	0	0	21181	949	20049	130061;130062	176256;176257;176258	176258			3	
GTFHWSGNEQMTK	1	Oxidation (M)	1537.662	0.66197652	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	23.881	23.554	2;3	7.9832E-05	19335	160511_QHF_FH_JSI12i_3	74.733	73.702			0.92657	0.97597	8.6566	4	0	Median	NaN	NaN	NaN	0	0	Median	0.88261	1.013	NaN	1	0	Median	1.058	1.027	NaN	1	0	Median	0.92657	0.89418	7.1172	2	0	Median	287760000	148260000	139500000	0	0	0	33618000	19551000	14067000	63560000	30065000	33495000	190580000	98640000	91942000	21182	5160	20050	130063;130064;130065;130066;130067	176259;176260;176261;176262;176263;176264	176262		2592	6	
GTFHWSGNEQMTK	1	Unmodified	1521.6671	0.6670619	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.73		1	10						2	3	5	2	3	36.662	34.283	2;3	1.6707E-31	29700	160511_QHF_FH_JSI11i_3	192.65	191.94			1.0987	1.0715	24.001	10	1	Median	1.5601	1.2898	9.4915	3	1	Median	0.71268	0.83168	41.513	3	0	Median	1.0883	1.0469	4.039	2	0	Median	1.0295	1.0457	2.6703	2	0	Median	1766000000	838680000	927350000	129340000	42928000	86408000	280430000	157910000	122520000	641570000	285740000	355830000	714700000	352100000	362600000	21183	5160	20050	130068;130069;130070;130071;130072;130073;130074;130075;130076;130077;130078;130079;130080	176265;176266;176267;176268;176269;176270;176271;176272;176273;176274;176275;176276;176277;176278;176279;176280;176281;176282;176283;176284;176285;176286	176267			22	
GTFIADSHQNFALFFQLVDVNTGAELTPHQTFVR	0	Unmodified	3819.9009	0.90090825	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	96.193	88.116	4	5.841E-38	52150	160513_QHF_FH_JSI10Kac_6	170.44	160.72			0.75969	1.0759	28.555	3	1	Plateau	0.75969	0.6416	NaN	1	0	Median	0.59952	0.70683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0446	1.0964	NaN	1	0	Median	605510000	380500000	225010000	163950000	89595000	74356000	226780000	179730000	47047000	0	0	0	214780000	111180000	103600000	21184	817	20051	130081;130082;130083	176287;176288	176288			2	
GTFIEFR	0	Unmodified	868.4443	0.44430282	275;3895	O15305;Q92871	PMM2;PMM1	Phosphomannomutase 2;Phosphomannomutase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		4	2					1		2	1	2	2	52.622	50.504	2	0.0062314	43571	160511_QHF_FH_JSI11i_2	91.906	59.436			1.2066	1.21	18.337	7	0	Median	1.6818	1.4537	23.837	2	0	Median	0.91149	1.1175	NaN	1	0	Median	1.1045	1.0806	16.004	2	0	Median	1.0624	1.1337	11.067	2	0	Median	553910000	267620000	286290000	80219000	34808000	45411000	89673000	47808000	41865000	203890000	100320000	103570000	180120000	84680000	95444000	21185	275;3895	20052	130084;130085;130086;130087;130088;130089;130090	176289;176290;176291;176292;176293;176294;176295;176296;176297	176294			9	
GTFPDAR	0	Unmodified	762.36605	0.3660525	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.13	4	2	1				3	1		4	3	2	2	17.912	14.388	2	0.0017722	8842	160513_QHF_FH_JSI10Kac_4	105.2	71.843			1.1998	1.141	6.8273	11	1	Median	1.3824	1.1549	2.9438	4	1	Median	0.92742	1.1173	1.8979	3	0	Median	1.253	1.2148	5.4033	2	0	Median	0.94837	1.0139	5.7194	2	0	Median	3194600000	1540700000	1653900000	802150000	372530000	429620000	904040000	451240000	452800000	792610000	345970000	446640000	695830000	370970000	324870000	21186	2644	20053	130091;130092;130093;130094;130095;130096;130097;130098;130099;130100;130101	176298;176299;176300;176301;176302;176303;176304;176305;176306;176307;176308;176309;176310;176311;176312;176313;176314	176302			17	
GTFQIVYK	1	Unmodified	954.51747	0.51746776	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.8	0.687							2	3	1		3	2	1	57.012	46.624	2	0.0001198	23730	160513_QHF_FH_JSI10Kac_5	123.69	90.849			0.905	1.0001	11.853	6	0	Median	NaN	NaN	NaN	0	0	Median	0.77014	0.90897	1.5931	3	0	Plateau	1.1312	1.0971	0.67015	2	0	Median	1.042	1.1537	NaN	1	0	Median	60502000	31308000	29194000	0	0	0	33799000	17700000	16100000	17091000	8961300	8129400	9612100	4647400	4964700	21187	5107	20054	130102;130103;130104;130105;130106;130107	176315;176316;176317;176318;176319	176319			5	
GTFTDDLHK	1	Unmodified	1032.4876	0.4876242	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0		6								2	2	1	1	24.944	24.035	2;3	0.0099229	20833	160511_QHF_FH_JSI10i_2	31.286	26.298			1.0194	0.97049	22.899	6	0	Median	1.0773	0.92765	18.396	2	0	Median	0.80194	0.97501	42.1	2	0	Median	1.1806	1.1852	NaN	1	0	Median	0.79343	0.89146	NaN	1	0	Median	240520000	122900000	117620000	60573000	29061000	31511000	73198000	38521000	34677000	56852000	25814000	31038000	49900000	29507000	20393000	21188	4714	20055	130108;130109;130110;130111;130112;130113	176320;176321;176322	176321			2	
GTFVERDR	0	Unmodified	978.48829	0.4882929	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.4313	8.7881	2	0.010448	6483	160511_QHF_FH_JSI9i_3	100.39	69.672			1.1844	0.96202	NaN	1	0	Median	1.1844	0.96202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65610000	30379000	35232000	65610000	30379000	35232000	0	0	0	0	0	0	0	0	0	21189	920	20056	130114	176323	176323			1	
GTFVHSTWTCPMEVLR	0	Unmodified	1919.9022	0.90222357	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		75.398	73.115	3	7.6987E-05	38365	160513_QHF_FH_JSI10Kac_6	80.361	76.393			0.78212	0.90647	20.83	4	1	Median	1.3361	1.1091	NaN	1	0	Median	0.78212	0.90647	5.0837	2	0	Median	0.70687	0.67238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139170000	75167000	64004000	18862000	8094600	10768000	77585000	43338000	34247000	42724000	23735000	18989000	0	0	0	21190	5536	20057	130115;130116;130117;130118	176324;176325;176326;176327;176328;176329	176329			6	
GTGAASFDEFGNSK	1	Unmodified	1386.6052	0.60517315	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.365	39.73	2	4.1354E-10	36043	160511_QHF_FH_JSI12i_1	151.55	135.92			1.4039	1.5257	19.249	4	1	Median	2.4482	1.995	NaN	1	0	Median	1.2174	1.4422	NaN	1	0	Median	1.3052	1.2668	NaN	1	1	Median	1.51	1.614	NaN	1	0	Median	331570000	149550000	182020000	48153000	18848000	29305000	95205000	50033000	45172000	81731000	41271000	40461000	106480000	39401000	67078000	21191	2148	20058	130119;130120;130121;130122	176330;176331;176332;176333	176331			4	
GTGANGSFK	1	Unmodified	837.39808	0.39808091	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.77	5	3	1				4			3	3	4	3	7.3333	6.2344	2	0.00065589	3349	160513_QHF_FH_JSI11Kac_4	89.698	25.433			1.0345	1.083	26.398	9	3	Median	1.4789	1.2419	0.42452	2	1	Median	1.0628	1.274	22.968	2	0	Median	0.78008	0.76329	39.932	2	0	Median	0.97226	1.0264	7.6381	3	2	Plateau	1180600000	619470000	561150000	284000000	130560000	153440000	333930000	187600000	146330000	305230000	167740000	137490000	257460000	133570000	123890000	21192	3834	20059	130123;130124;130125;130126;130127;130128;130129;130130;130131;130132;130133;130134;130135	176334;176335;176336;176337;176338;176339;176340;176341;176342;176343;176344;176345;176346;176347	176340			14	
GTGARPYTGK	1	Unmodified	1006.5196	0.51959303	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		5.8548	5.515	2;3	9.4162E-05	3503	160511_QHF_FH_JSI10i_3	101.65	69.326			0.74922	0.82234	36.175	6	2	Median	1.3305	1.0763	2.2623	2	0	Median	0.7113	0.82234	1.389	2	0	Median	0.57967	0.54339	42.36	2	2	Median	NaN	NaN	NaN	0	0	Median	2795200000	1401400000	1393800000	1259100000	497540000	761590000	1163600000	657590000	506040000	372460000	246300000	126170000	0	0	0	21193	1664	20060	130136;130137;130138;130139;130140;130141	176348;176349;176350;176351;176352;176353;176354;176355	176352			8	
GTGASGSFK	1	Unmodified	810.38718	0.38718187	969;1099;1097;1098	P10412;Q02539;P22492;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1t;Histone H1.5;Histone H1.2;Histone H1.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.48	6.05	4	4	4		2	4	5	4	4	8	8	8	7	8.0109	3.0406	2	2.0359E-12	3616	160513_QHF_FH_JSI11Kac_4	160.88	113.03			1.0017	1.0311	25.391	28	0	Median	1.0399	0.81987	34.946	5	0	Median	0.89447	1.0274	27.814	8	0	Median	1.1951	1.1616	12.406	8	0	Median	0.94433	0.97762	15.505	7	0	Median	53293000000	24990000000	28303000000	12137000000	5380600000	6756300000	12696000000	6835700000	5859900000	13988000000	5742400000	8245200000	14473000000	7031600000	7441300000	21194	969;1097;1099;1098	20061	130142;130143;130144;130145;130146;130147;130148;130149;130150;130151;130152;130153;130154;130155;130156;130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167;130168;130169;130170;130171;130172	176356;176357;176358;176359;176360;176361;176362;176363;176364;176365;176366;176367;176368;176369;176370;176371;176372;176373;176374;176375;176376;176377;176378;176379;176380;176381;176382;176383;176384;176385;176386;176387;176388;176389;176390;176391;176392;176393;176394;176395;176396;176397;176398;176399;176400;176401	176375			45	
GTGASGSFKLNK	2	Acetyl (K)	1207.6197	0.619701	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.471						2	1				1	1	1	39.452	30.372	2	0.016787	18109	160513_QHF_FH_JSI11Kac_4	50.284	38.237			0.40928	0.40725	44.909	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81834	0.96675	NaN	1	0	Median	0.40928	0.40725	NaN	1	0	Median	0.4736	0.50813	NaN	1	0	Median	28413000	20673000	7740300	0	0	0	3300700	2237200	1063500	20792000	15118000	5673900	4320100	3317200	1002900	21195	969;1097;1099;1098	20062	130173;130174;130175	176402;176403;176404	176402	735		3	
GTGDSLR	0	Unmodified	704.34532	0.34531706	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.481	5.1571	2	0.016289	3016	160511_QHF_FH_JSI11i_1	63.306	20.832			0.82627	0.87961	8.9227	4	0	Linear	0.89244	0.7295	NaN	1	0	Median	0.79059	0.90534	NaN	1	0	Median	0.86356	0.83588	NaN	1	0	Median	0.7654	0.81453	NaN	1	0	Median	984800000	542760000	442030000	129350000	69525000	59820000	322550000	175930000	146620000	280040000	150810000	129230000	252860000	146500000	106360000	21196	2230	20063	130176;130177;130178;130179	176405	176405			1	
GTGDSLRESK	1	Unmodified	1048.5149	0.51490158	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.916	5.9637	2	0.014714	3722	160511_QHF_FH_JSI11i_3	61.593	40.065			0.84936	0.82239	60.009	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3951	1.2571	NaN	1	0	Median	0.5171	0.53802	NaN	1	0	Median	92631000	43512000	49120000	0	0	0	0	0	0	52372000	16909000	35463000	40259000	26603000	13657000	21197	2230	20064	130180;130181	176406	176406			1	
GTGEAEEEYVGPR	0	Unmodified	1392.6157	0.61573784	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	25.236	24.607	2	3.6723E-24	21170	160511_QHF_FH_JSI9i_1	225.01	210.8			1.0813	1.0469	7.4834	6	4	Median	1.2032	0.98028	3.029	2	2	Median	0.94566	1.1114	3.8595	2	2	Median	1.1797	1.1521	NaN	1	0	Median	0.99103	1.0133	NaN	1	0	Median	348360000	168190000	180180000	116840000	49591000	67247000	107570000	56630000	50940000	54393000	25336000	29058000	69561000	36630000	32931000	21198	2479	20065	130182;130183;130184;130185;130186;130187	176407;176408;176409;176410;176411;176412;176413	176412			7	
GTGIVSAPVPK	1	Unmodified	1024.5917	0.59169534	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.66	12	4	4		3	5	3	1		7	9	8	8	39.984	35.754	1;2;3	7.6618E-18	6679	160513_QHF_FH_JSI9Kac_3	160.36	97.815			0.94774	0.96496	12.638	30	1	Median	1.3101	1.0965	14.132	6	1	Median	0.80991	0.96496	7.161	8	0	Median	0.9625	0.9334	13.579	8	0	Median	0.94613	1.01	8.7642	8	0	Median	15864000000	7784600000	8079600000	3635200000	1581900000	2053300000	3737800000	1921600000	1816200000	4468100000	2234000000	2234100000	4023100000	2047000000	1976000000	21199	1084	20066	130188;130189;130190;130191;130192;130193;130194;130195;130196;130197;130198;130199;130200;130201;130202;130203;130204;130205;130206;130207;130208;130209;130210;130211;130212;130213;130214;130215;130216;130217;130218;130219	176414;176415;176416;176417;176418;176419;176420;176421;176422;176423;176424;176425;176426;176427;176428;176429;176430;176431;176432;176433;176434;176435;176436;176437;176438;176439;176440;176441;176442;176443;176444;176445;176446;176447;176448;176449;176450;176451;176452;176453;176454;176455;176456;176457;176458;176459;176460;176461;176462;176463;176464;176465	176443			50	
GTGIVSAPVPKK	2	Unmodified	1152.6867	0.68665836	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	26.795	26.777	2;3	0.0001425	22357	160511_QHF_FH_JSI12i_3	69.342	60.154			0.75831	0.76572	60.013	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52957	0.50092	NaN	1	0	Median	1.0859	1.1705	NaN	1	0	Median	88092000	49658000	38434000	0	0	0	0	0	0	17363000	12008000	5354900	70729000	37650000	33079000	21200	1084	20067	130220;130221;130222	176466;176467	176466			2	
GTGIVTR	0	Unmodified	702.40244	0.40243801	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	9.4941	9.14	2	0.01431	6807	160511_QHF_FH_JSI12i_2	66.429	5.6694			1.0346	1.005	11.5	5	0	Median	1.0726	0.90919	NaN	1	0	Median	0.72633	0.88259	NaN	1	0	Median	1.0346	1.0463	NaN	1	0	Median	1.0159	1.087	11.088	2	0	Median	631510000	321260000	310250000	117000000	57406000	59599000	115650000	63354000	52299000	167570000	82617000	84951000	231290000	117880000	113400000	21201	133	20068	130223;130224;130225;130226;130227	176468	176468			1	
GTGLDEAMEWLVETLK	1	Unmodified	1790.8761	0.87605162	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	103.4	103.32	2	1.7472E-183	91042	160511_QHF_FH_JSI11i_2	318.91	300.77			0.97741	0.99193	18.824	5	2	Median	1.0737	0.91084	NaN	1	1	Median	0.97741	1.1497	NaN	1	1	Median	0.91797	0.88546	30.383	2	0	Median	0.8885	0.99193	NaN	1	0	Median	198400000	104770000	93628000	29620000	21653000	7966800	16529000	8767900	7761000	123310000	59138000	64170000	28941000	15211000	13730000	21202	1498	20069	130228;130229;130230;130231;130232;130233	176469;176470;176471;176472;176473;176474;176475;176476;176477;176478	176477			10	
GTGLLSSDYR	0	Unmodified	1067.5247	0.52473799	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.35	2	5	1				2	4		2	4	3	5	37.627	33.549	2	6.4989E-05	29647	160511_QHF_FH_JSI10i_2	90.15	70.79			0.9739	0.99143	17.26	11	0	Median	1.0257	0.86665	8.1469	2	0	Median	0.89164	1.0538	11.753	3	0	Median	1.0596	1.0408	14.268	3	0	Median	0.99923	0.86295	27.796	3	0	Plateau	772990000	397520000	375480000	100210000	50272000	49937000	244450000	129230000	115220000	292190000	152120000	140070000	136150000	65900000	70246000	21203	3250	20070	130234;130235;130236;130237;130238;130239;130240;130241;130242;130243;130244;130245;130246;130247	176479;176480;176481;176482;176483;176484;176485;176486;176487;176488;176489;176490;176491;176492;176493;176494;176495	176492			16	
GTGLQPGEEELPDIAPPLVTPDEPK	1	Unmodified	2598.3065	0.30647852	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	93.048	92.654	3	1.0412E-06	82223	160511_QHF_FH_JSI9i_1	64.779	61.897			0.91673	0.93394	13.909	3	1	Median	1.1528	0.95695	NaN	1	0	Median	0.62599	0.74367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91673	0.93394	NaN	1	0	Median	297380000	178110000	119270000	85465000	53399000	32066000	123980000	82170000	41812000	0	0	0	87937000	42542000	45396000	21204	1573	20071	130248;130249;130250	176496;176497;176498;176499;176500;176501;176502;176503;176504;176505;176506	176504			11	
GTGLYELWK	1	Unmodified	1065.5495	0.54949617	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	68.155	67.258	2	0.00017854	58640	160511_QHF_FH_JSI11i_2	104.2	88.056			19.289	20.218	46.523	3	3	Median	NaN	NaN	NaN	0	0	Median	26.704	32.97	NaN	1	1	Median	19.289	20.218	NaN	1	1	Median	11.732	13.008	NaN	1	1	Median	2613400000	65042000	2548400000	0	0	0	552500000	14941000	537560000	1078400000	29018000	1049400000	982470000	21083000	961380000	21205	4815	20072	130251;130252;130253	176507;176508;176509;176510	176509			4	
GTGMQIR	0	Unmodified	761.38541	0.38540773	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	12.035	11.612	2	0.0075971	8943	160511_QHF_FH_JSI11i_2	86.838	45.716			0.82249	0.84227	15.016	5	0	Median	0.88842	0.74673	NaN	1	0	Median	0.69675	0.846	NaN	1	0	Median	0.98895	0.96046	21.328	2	0	Median	0.7656	0.84227	NaN	1	0	Median	1309800000	734790000	575050000	218530000	113920000	104620000	259380000	157060000	102320000	585160000	321490000	263670000	246760000	142320000	104440000	21206	1376	20073	130254;130255;130256;130257;130258	176511;176512;176513;176514	176513			4	
GTGNTSTDGSYKPSFLTDQELK	2	Unmodified	2345.1023	0.1022994	1291	P27540	ARNT	Aryl hydrocarbon receptor nuclear translocator	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	55.826	55.661	3	7.9551E-06	47769	160511_QHF_FH_JSI12i_3	82.037	72.874			1.1282	1.0454	19.117	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1282	1.0454	NaN	1	1	Median	0.9862	1.0399	27.033	2	2	Median	60035000	28833000	31202000	0	0	0	0	0	0	15009000	5614300	9394600	45026000	23219000	21807000	21207	1291	20074	130259;130260;130261	176515;176516;176517;176518	176517			4	
GTGQSDDSDIWDDTALIK	1	Unmodified	1935.8698	0.86978027	2748	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	76.922	76.384	2	5.9533E-31	69512	160511_QHF_FH_JSI12i_1	189.1	173.9			0.83447	0.8444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83447	0.8444	NaN	1	0	Median	27061000	15980000	11080000	0	0	0	0	0	0	0	0	0	27061000	15980000	11080000	21208	2748	20075	130262;130263	176519;176520;176521;176522	176520			4	
GTGREQQIVIQSSGGLSK	1	Unmodified	1843.9752	0.97518882	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.57	4.69		2	4						1	2	3	2		36.255	34.326	3	2.5222E-07	30202	160511_QHF_FH_JSI10i_2	96.544	78.844			1.0607	1.2725	35.662	7	2	Median	2.39	2.0219	13.697	2	0	Median	1.1747	1.4327	10.256	3	0	Plateau	0.92597	0.87225	12.817	2	2	Median	NaN	NaN	NaN	0	0	Median	323170000	142310000	180870000	76249000	19928000	56321000	207960000	101030000	106930000	38964000	21348000	17616000	0	0	0	21209	1480	20076	130264;130265;130266;130267;130268;130269;130270	176523;176524;176525;176526;176527;176528;176529;176530;176531	176529			9	
GTGRIPDQLVILDMK	1	Unmodified	1654.9076	0.90762652	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		75.073	75.073	3	0.00034107	66968	160511_QHF_FH_JSI11i_3	67.416	58.818			1.247	1.1569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.247	1.1569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88815000	34541000	54275000	0	0	0	0	0	0	88815000	34541000	54275000	0	0	0	21210	1678	20077	130271	176532	176532			1	
GTGVIQLYEIQHGDLK	1	Unmodified	1769.9312	0.93119874	4178	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	64.696	64.551	2;3	2.2024E-15	55791	160511_QHF_FH_JSI12i_3	164.81	130.43			0.91765	0.88933	34.465	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68268	0.63919	32.97	2	1	Median	1.033	1.0431	8.8191	2	0	Median	363730000	217050000	146680000	0	0	0	0	0	0	160580000	96714000	63865000	203150000	120340000	82819000	21211	4178	20078	130272;130273;130274;130275	176533;176534;176535;176536	176535			3	
GTGVVTSVPSDSPDDIAALR	0	Unmodified	1955.98	0.97999942	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	67.1	66.508	2;3	2.5395E-68	60531	160511_QHF_FH_JSI11i_1	289.89	258.7			0.90824	0.97437	17.43	8	1	Median	1.0259	0.85851	29.05	2	1	Median	0.6817	0.80289	22.275	2	0	Median	0.953	0.93027	13.225	2	0	Median	0.95878	1.0141	0.54541	2	0	Median	2077000000	1060400000	1016600000	428230000	196890000	231340000	607170000	334660000	272520000	560080000	275190000	284890000	481460000	253630000	227840000	21212	5215	20079	130276;130277;130278;130279;130280;130281;130282;130283	176537;176538;176539;176540;176541;176542;176543;176544;176545;176546;176547;176548;176549	176538			13	
GTGVVTSVPSDSPDDIAALRDLK	1	Unmodified	2312.186	0.18596945	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	74.765	74.032	3	1.004E-05	65701	160511_QHF_FH_JSI10i_2	59.356	52.141			0.58647	0.64887	50.361	4	1	Median	NaN	NaN	NaN	0	0	Median	0.65979	0.79403	NaN	1	0	Median	0.5213	0.53025	NaN	1	0	Median	0.45583	0.48864	77.391	2	1	Median	141590000	101570000	40021000	0	0	0	25747000	15740000	10006000	23413000	15232000	8181600	92431000	70598000	21833000	21213	5215	20080	130284;130285;130286;130287	176550;176551;176552	176551			3	
GTHFNFAIVFTDVK	1	Unmodified	1594.8144	0.81437807	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	1	2	3	85.753	81.645	3	9.6996E-06	75272	160511_QHF_FH_JSI12i_3	103.21	96.011			0.97687	0.93771	41.743	7	2	Median	0.97687	0.83634	NaN	1	0	Median	0.56296	0.67979	NaN	1	1	Median	1.476	1.4214	4.2104	2	1	Median	1.0511	1.0766	49.948	3	0	Plateau	252340000	121310000	131030000	70815000	26711000	44103000	7534900	5455900	2078900	63347000	28874000	34473000	110650000	60269000	50379000	21214	130	20081	130288;130289;130290;130291;130292;130293;130294	176553;176554;176555;176556;176557;176558;176559;176560;176561;176562	176558			10	
GTHTAVSSNDR	0	Unmodified	1143.5269	0.52686325	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	2					2		1	1	3	3	4.4533	1.5269	2;3	0.011208	1065	160511_QHF_FH_JSI12i_3	46.001	24.538			0.9413	0.89073	44.268	7	0	Median	1.0348	0.91272	NaN	1	0	Median	0.67055	0.82098	NaN	1	0	Median	0.9413	0.89073	19.987	3	0	Median	0.69279	0.76786	103.37	2	0	Median	297930000	169650000	128280000	100950000	47925000	53025000	136220000	87049000	49170000	48990000	26650000	22340000	11768000	8022100	3746200	21215	5142	20082	130295;130296;130297;130298;130299;130300;130301;130302	176563;176564;176565;176566	176566			4	
GTHYQVACQK	1	Unmodified	1190.5502	0.55024123	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.7505	7.7993	2	0.00016174	5519	160511_QHF_FH_JSI11i_3	95.358	76.087			2.3043	2.3471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3043	2.3471	NaN	1	1	Median	45438000	11424000	34015000	0	0	0	0	0	0	12018000	0	12018000	33420000	11424000	21997000	21216	1670	20083	130303;130304	176567;176568	176567			2	
GTIADYQPDDK	1	Unmodified	1221.5513	0.55134667	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		26.682	26.491	2	0.0020665	23371	160511_QHF_FH_JSI11i_1	63.624	34.523			1.6879	1.6517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6879	1.6517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45300000	14856000	30444000	0	0	0	0	0	0	45300000	14856000	30444000	0	0	0	21217	4330	20084	130305;130306;130307	176569;176570;176571	176570			3	
GTIEILSDVQLIK	1	Unmodified	1427.8235	0.82354577	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.95	4.84	5	8	6						3	5	7	5	5	93.11	91.903	2;3	2.8974E-54	81168	160511_QHF_FH_JSI12i_2	263.86	223.51			0.93841	0.95346	15.706	22	1	Median	1.1033	0.91871	8.2277	5	0	Median	0.76658	0.90095	10.499	7	0	Median	1.049	0.95491	8.7871	5	0	Median	0.92255	1.0248	26.69	5	1	Median	2580800000	1362700000	1218100000	456000000	215270000	240730000	909890000	534240000	375650000	711860000	353560000	358310000	503010000	259620000	243380000	21218	837	20085	130308;130309;130310;130311;130312;130313;130314;130315;130316;130317;130318;130319;130320;130321;130322;130323;130324;130325;130326;130327;130328;130329	176572;176573;176574;176575;176576;176577;176578;176579;176580;176581;176582;176583;176584;176585;176586;176587;176588;176589;176590;176591;176592;176593;176594;176595;176596;176597;176598;176599;176600;176601;176602;176603;176604;176605;176606;176607;176608;176609;176610;176611;176612;176613	176578			42	
GTIEINPR	0	Unmodified	898.48723	0.48723027	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7	6.07	1	3					3			1	3	2	1	29.633	25.314	2	9.797E-05	22175	160511_QHF_FH_JSI10i_1	130.04	56.423			1.0184	1.1208	13.314	7	0	Median	1.4041	1.1872	NaN	1	0	Median	0.89119	1.0475	12.311	3	0	Median	1.0758	1.0711	6.4177	2	0	Median	1.3286	1.4426	NaN	1	0	Median	397320000	194850000	202470000	90848000	39082000	51766000	179030000	94680000	84351000	123070000	58923000	64143000	4369500	2160700	2208800	21219	2266	20086	130330;130331;130332;130333;130334;130335;130336	176614;176615;176616;176617;176618	176615			5	
GTILISSEEGETEANNHK	1	Unmodified	1927.9123	0.91231379	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.06	4	10	3					1		2	5	5	6	34.963	33.726	2;3	2.8971E-99	29359	160511_QHF_FH_JSI9i_2	263.04	252.99			0.81849	0.85903	16.137	15	5	Median	1.1566	0.98167	NaN	1	0	Median	0.73951	0.87835	23.607	4	2	Median	0.87297	0.84199	18.232	5	1	Median	0.81849	0.82899	10.122	5	2	Median	1605900000	846660000	759240000	199960000	95976000	103980000	437910000	251230000	186680000	503630000	239790000	263850000	464390000	259660000	204730000	21220	5254	20087	130337;130338;130339;130340;130341;130342;130343;130344;130345;130346;130347;130348;130349;130350;130351;130352;130353;130354	176619;176620;176621;176622;176623;176624;176625;176626;176627;176628;176629;176630;176631;176632;176633;176634;176635;176636;176637;176638;176639;176640;176641;176642;176643;176644;176645	176633			27	
GTILISSEEGETEANNHKK	2	Unmodified	2056.0073	0.0072768075	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		26.981	26.981	3	7.0837E-11	23184	160511_QHF_FH_JSI11i_3	128.69	114.01			0.86208	0.81495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86208	0.81495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25768000	12288000	13481000	0	0	0	0	0	0	25768000	12288000	13481000	0	0	0	21221	5254	20088	130355	176646;176647	176647			2	
GTILISSEEGETEANNHKK	2	Acetyl (K)	2098.0178	0.017841494	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.224	36.794	3	0.0047438	20670	160513_QHF_FH_JSI11Kac_5	57.936	40.654			0.064115	0.061103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.064115	0.061103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2734300	2655700	78578	0	0	0	0	0	0	2734300	2655700	78578	0	0	0	21222	5254	20088	130356	176648	176648	3346		1	
GTILVGGGALATVLGLSQFAHYR	0	Unmodified	2300.2641	0.26410062	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.261	88.391	2;3	2.7765E-169	52130	160513_QHF_FH_JSI10Kac_6	279.19	263.6			0.90287	0.96393	7.3664	5	0	Median	1.1421	0.96963	NaN	1	0	Median	0.77798	0.921	6.4433	2	0	Median	1.138	1.0811	NaN	1	0	Median	0.90287	0.94881	NaN	1	0	Median	3674200000	1863700000	1810500000	703340000	303370000	399970000	1705000000	969760000	735270000	778040000	337570000	440470000	487820000	253020000	234800000	21223	1558	20089	130357;130358;130359;130360;130361	176649;176650;176651;176652;176653;176654	176653			6	
GTINFLHADCDK	1	Unmodified	1389.6347	0.63469914	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	42.267	41.788	2;3	4.3737E-05	35591	160511_QHF_FH_JSI12i_3	71.692	67.279			1.2108	1.1997	19.846	7	2	Median	1.3072	1.0885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94807	0.88105	27.667	3	1	Plateau	1.2108	1.205	11.277	3	1	Median	501540000	233570000	267970000	25333000	12235000	13098000	0	0	0	197120000	106140000	90984000	279080000	115200000	163880000	21224	4390	20090	130362;130363;130364;130365;130366;130367;130368	176655;176656;176657;176658;176659;176660;176661	176660			7	
GTIPDMIADSGK	1	Unmodified	1203.5805	0.58053831	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.879	53.215	2	0.00022559	48300	160511_QHF_FH_JSI12i_1	94.363	88.05			1.005	1.071	5.3671	4	4	Median	1.3096	1.0708	NaN	1	1	Median	0.92093	1.1045	NaN	1	1	Median	0.99009	0.97578	NaN	1	1	Median	1.0202	1.0711	NaN	1	1	Median	571570000	301240000	270320000	104640000	51759000	52876000	127770000	69069000	58703000	179450000	91481000	87969000	159710000	88934000	70777000	21225	2442	20091	130369;130370;130371;130372	176662;176663;176664;176665	176663			4	
GTIQVITQGTSLK	1	Unmodified	1344.7613	0.76127986	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.58	6.17	2	7	1	1		3	4	4	4	3	5	8	10	59.249	51.921	2	3.7598E-222	27197	160513_QHF_FH_JSI9Kac_5	331.73	242.03			0.98673	1.0091	69.165	20	8	Median	1.3416	1.131	70.357	3	2	Median	0.82089	0.98299	120.37	5	1	Median	0.97133	0.96817	35.097	7	4	Median	1.1	1.1168	24.697	5	1	Median	3457100000	1896000000	1561100000	1026400000	451830000	574550000	652830000	530630000	122210000	1540600000	802480000	738130000	237290000	111070000	126220000	21226	309	20092	130373;130374;130375;130376;130377;130378;130379;130380;130381;130382;130383;130384;130385;130386;130387;130388;130389;130390;130391;130392;130393;130394;130395;130396;130397;130398	176666;176667;176668;176669;176670;176671;176672;176673;176674;176675;176676;176677;176678;176679;176680;176681;176682;176683;176684;176685;176686;176687;176688;176689;176690;176691;176692;176693;176694;176695;176696;176697;176698;176699;176700;176701;176702;176703;176704;176705;176706	176673			40	
GTISAPGK	1	Unmodified	729.4021	0.40210366	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.13	6					2	2			1	3	2	4	12.986	9.8029	2	0.0011352	9019	160511_QHF_FH_JSI12i_1	93.561	45.818			0.90204	1.0997	47.065	10	1	Plateau	1.2794	1.0528	NaN	1	0	Median	0.96768	1.1592	63.086	3	0	Plateau	0.90311	0.884	26.01	2	0	Median	1.1823	1.2723	57.785	4	1	Linear	1901500000	962180000	939320000	219190000	100920000	118270000	732240000	375830000	356420000	269680000	139760000	129920000	680390000	345680000	334710000	21227	2409	20093	130399;130400;130401;130402;130403;130404;130405;130406;130407;130408	176707;176708;176709;176710;176711;176712;176713;176714;176715;176716;176717	176709			11	
GTITDAPGFDPLR	0	Unmodified	1358.683	0.68302954	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.476	64.845	2	0.010099	59074	160511_QHF_FH_JSI12i_1	57.293	38.686			0.38236	0.39054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38236	0.39054	NaN	1	1	Median	56888000	38144000	18745000	0	0	0	0	0	0	0	0	0	56888000	38144000	18745000	21228	1723	20094	130409	176718	176718			1	
GTITDAPGFDPLRDAEVLRK	1	Unmodified	2170.1382	0.1382314	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	6	5	1	76.025	75.346	3;4	1.9874E-25	66980	160511_QHF_FH_JSI10i_2	177.64	170.02			0.89944	0.9361	14.276	12	4	Median	1.0205	0.88379	11.046	2	0	Median	0.78613	0.95642	16.189	5	2	Median	1.1169	1.0543	14.335	4	2	Linear	0.74343	0.76125	NaN	1	0	Median	2156100000	1046200000	1109800000	262220000	104610000	157620000	601470000	325690000	275790000	1225600000	576160000	649470000	66767000	39795000	26972000	21229	1723	20095	130410;130411;130412;130413;130414;130415;130416;130417;130418;130419;130420;130421;130422;130423	176719;176720;176721;176722;176723;176724;176725;176726;176727;176728;176729;176730;176731;176732;176733;176734;176735;176736;176737;176738;176739;176740;176741;176742;176743;176744;176745;176746;176747	176738			29	
GTITIQDTGIGMTQEELVSNLGTIAR	0	Unmodified	2717.3906	0.39055928	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				101.34	101.16	3	5.0873E-14	89368	160511_QHF_FH_JSI9i_1	89.565	76.245			0.86301	0.7109	NaN	1	0	Median	0.86301	0.7109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62597000	22191000	40406000	62597000	22191000	40406000	0	0	0	0	0	0	0	0	0	21230	2328	20096	130424	176748	176748			1	
GTITVSAQELK	1	Unmodified	1145.6292	0.62920306	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	5.7	2	3	4			2	1	2		1	6	2	5	22.478	18.65	2;3	1.9731E-05	22050	160513_QHF_FH_JSI10Kac_3	102.61	54.326			0.81328	0.9493	24.199	13	0	Median	1.4095	1.1796	NaN	1	0	Median	0.81328	0.96853	14.247	5	0	Median	0.76872	0.7463	34.026	2	0	Median	0.72684	0.7363	28.082	5	0	Median	2329700000	1164300000	1165400000	230040000	94356000	135690000	448240000	254580000	193650000	176630000	72157000	104470000	1474800000	743200000	731560000	21231	4320	20097	130425;130426;130427;130428;130429;130430;130431;130432;130433;130434;130435;130436;130437;130438	176749;176750;176751;176752;176753;176754;176755;176756;176757	176753			9	
GTIVLASPGWTTHSISDGK	1	Unmodified	1925.9847	0.98469087	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.43	2	8	8					3	7	5	9	8	6	67.809	63.768	2;3	1.6098E-57	33065	160513_QHF_FH_JSI12Kac_6	175.21	165.93			0.95773	1.0262	16.153	26	2	Median	1.2237	1.066	18.636	5	0	Median	0.91343	1.0784	12.616	8	0	Median	1.0572	1.0275	21	8	1	Median	0.89857	0.96461	11.275	5	1	Median	7051200000	3675900000	3375200000	845920000	419000000	426920000	1370900000	763250000	607650000	2359800000	1155400000	1204400000	2474600000	1338300000	1136300000	21232	2581	20098	130439;130440;130441;130442;130443;130444;130445;130446;130447;130448;130449;130450;130451;130452;130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466	176758;176759;176760;176761;176762;176763;176764;176765;176766;176767;176768;176769;176770;176771;176772;176773;176774;176775;176776;176777;176778;176779;176780;176781;176782;176783;176784;176785;176786;176787;176788;176789;176790;176791;176792;176793;176794;176795;176796;176797;176798;176799;176800	176794			41	
GTKALMDEVVK	2	Acetyl (K)	1231.6482	0.64822394	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.7	0.471						1	2				2		1	66.277	55.982	2	0.0034535	30109	160513_QHF_FH_JSI10Kac_4	71.555	48.127			0.92761	1.0948	127.44	3	1	Median	NaN	NaN	NaN	0	0	Median	1.022	1.2073	13.823	2	0	Median	NaN	NaN	NaN	0	0	Median	0.12195	0.13365	NaN	1	1	Median	12595000	6813700	5781100	0	0	0	10588000	4934700	5653300	0	0	0	2006900	1879000	127820	21233	775	20099	130467;130468;130469	176801;176802;176803	176801	389;395		3	
GTKHFEALANR	1	Acetyl (K)	1284.6575	0.65748349	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		37.898	28.417	2	0.000845	15794	160513_QHF_FH_JSI11Kac_6	87.913	50.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	952710	952710	0	0	0	0	0	0	0	952710	952710	0	0	0	0	21234	2674	20100	130470	176804	176804	2622		1	
GTKVILHLK	2	Acetyl (K)	1049.6597	0.65971533	898;880	P08238;Q58FF7;P07900;Q14568	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	no	no	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	51.592	42.239	2;3	3.2128E-05	23133	160513_QHF_FH_JSI10Kac_6	109.42	63.261			0.34804	0.33391	86.281	6	0	Median	0.38349	0.33266	NaN	1	0	Median	1.1371	1.3316	1.8895	2	0	Median	0.22168	0.20822	4.6689	2	0	Median	0.31586	0.33517	NaN	1	0	Median	442710000	340790000	101920000	10363000	7698400	2664500	82328000	38960000	43368000	315080000	267080000	47996000	34936000	27050000	7886400	21235	898;880	20101	130471;130472;130473;130474;130475;130476;130477	176805;176806;176807;176808;176809;176810;176811;176812;176813	176811	608;609		9	
GTLDNLK	1	Unmodified	759.41267	0.41266834	743	O95905	ECD	Protein SGT1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.309	10.108	2	0.012621	7608	160511_QHF_FH_JSI11i_2	69.093	0.39289			0.92692	0.92803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92692	0.92803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103510000	44808000	58707000	0	0	0	0	0	0	103510000	44808000	58707000	0	0	0	21236	743	20102	130478	176814	176814			1	
GTLDPVEK	1	Unmodified	857.44945	0.44944778	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	5.72	4		1		3	3	1	1		2	4	3	4	25.576	21.069	2	5.5645E-07	12765	160513_QHF_FH_JSI11Kac_3	141.39	57.145			0.97388	0.9841	15.643	11	0	Median	1.1007	0.9841	NaN	1	0	Median	0.75482	0.88836	19.406	4	0	Median	1.0798	1.0496	5.3555	3	0	Median	1.0266	1.0761	9.5942	3	0	Median	26947000000	13076000000	13871000000	6414400000	2796800000	3617600000	5677000000	2884700000	2792300000	6869800000	3486800000	3382900000	7986100000	3908100000	4078000000	21237	985	20103	130479;130480;130481;130482;130483;130484;130485;130486;130487;130488;130489;130490;130491	176815;176816;176817;176818;176819;176820;176821;176822;176823;176824;176825;176826;176827;176828;176829;176830;176831;176832;176833;176834;176835	176825			21	
GTLDPVEKALR	1	Acetyl (K)	1239.6823	0.68230126	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.707						5	2	1			2	4	2	71.982	62.328	2	6.1696E-05	32699	160513_QHF_FH_JSI10Kac_4	99.815	78.913			0.5851	0.62722	66.784	7	0	Median	NaN	NaN	NaN	0	0	Median	1.15	1.3667	2.5734	2	0	Median	0.31836	0.31591	48.843	3	0	Median	0.4624	0.49691	32.936	2	0	Median	90805000	54070000	36735000	0	0	0	29280000	12577000	16703000	48906000	32891000	16015000	12619000	8602200	4017000	21238	985	20104	130492;130493;130494;130495;130496;130497;130498;130499	176836;176837;176838;176839;176840;176841;176842;176843	176836	779		7	
GTLEQWIEK	1	Unmodified	1102.5659	0.56587452	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	71.009	60.282	2	0.0015859	30152	160513_QHF_FH_JSI10Kac_5	70.256	34.961			0.7888	0.81733	11.408	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90793	0.88599	NaN	1	1	Median	0.6853	0.75399	NaN	1	0	Median	4721300	2236400	2484900	0	0	0	0	0	0	2038500	791600	1246900	2682900	1444800	1238000	21239	1162	20105	130500;130501;130502;130503	176844;176845;176846;176847	176847			4	
GTLGGLFSQILQGEDIVR	0	Unmodified	1902.0211	0.021076378	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.03	101.88	2	6.9335E-38	84552	160511_QHF_FH_JSI10i_3	287.14	249.96			0.8226	0.9451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8226	0.9451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50187000	31220000	18967000	0	0	0	50187000	31220000	18967000	0	0	0	0	0	0	21240	4575	20106	130504	176848	176848			1	
GTLGGMFGMLK	1	Unmodified	1110.5566	0.55657216	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		5	4						2	4	2	3	2	80.917	78.676	2	1.296E-23	69557	160511_QHF_FH_JSI12i_3	180.44	153.18			0.73232	0.69151	38.583	11	6	Median	0.88368	0.74099	14.048	4	3	Median	0.62652	0.7471	18.197	2	1	Median	0.69638	0.69151	72.008	3	2	Median	0.76828	0.7979	26.487	2	0	Median	2337800000	1279900000	1058000000	518250000	255500000	262750000	377090000	207690000	169400000	743020000	490380000	252640000	699480000	326310000	373180000	21241	899	20107	130505;130506;130507;130508;130509;130510;130511;130512;130513;130514;130515	176849;176850;176851;176852;176853;176854;176855;176856;176857;176858;176859;176860;176861;176862;176863;176864;176865;176866;176867	176867			19	
GTLGGMFGMLK	1	Oxidation (M)	1126.5515	0.55148678	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	0	By MS/MS			By MS/MS	3	0			2							1			1	65.715	64.824	2	2.695E-05	55876	160511_QHF_FH_JSI12i_3	104.2	87.548			0.89164	0.81139	67.885	2	1	Median	0.61257	0.50207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2978	1.3113	NaN	1	0	Median	174100000	88502000	85596000	88167000	55724000	32443000	0	0	0	0	0	0	85930000	32778000	53153000	21242	899	20107	130516;130517	176868;176869	176869		475	2	
GTLGKFTVPMLK	2	Acetyl (K)	1332.7475	0.74754405	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.648	75.331	2	1.801E-06	41723	160513_QHF_FH_JSI11Kac_6	115.18	78.842			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43496000	43496000	0	0	0	0	0	0	0	43496000	43496000	0	0	0	0	21243	1023	20108	130518	176870	176870	841		1	
GTLGKFTVPMLK	2	Acetyl (K);Oxidation (M)	1348.7425	0.74245868	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		81.097	70.546	2	0.013663	37399	160513_QHF_FH_JSI11Kac_5	66.056	47.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21244	1023	20108	130519	176871	176871	841	614	1	
GTLIAIQTVGPGK	1	Unmodified	1253.7343	0.73433683	2615	Q15047	SETDB1	Histone-lysine N-methyltransferase SETDB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.498							5	6		1	4	3	3	69.334	58.579	2	7.2936E-17	32362	160513_QHF_FH_JSI11Kac_4	143.96	126.93			1.0378	1.1356	25.624	9	5	Median	1.3865	1.1674	NaN	1	1	Median	0.87623	1.0622	8.7469	3	2	Median	1.0759	1.0717	34.23	3	1	Median	1.3249	1.4905	38.458	2	1	Median	36664000	19077000	17587000	3957900	1631300	2326600	13655000	7810300	5844800	16673000	8429600	8243200	2378100	1205600	1172500	21245	2615	20109	130520;130521;130522;130523;130524;130525;130526;130527;130528;130529;130530	176872;176873;176874;176875;176876;176877;176878;176879;176880;176881;176882	176874			11	
GTLKGHNGWVTQIATTPQFPDMILSASR	1	Acetyl (K)	3067.5549	0.55493926	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		90.381	81.032	3	9.8083E-20	45405	160513_QHF_FH_JSI11Kac_6	106.18	93.75			0.48688	0.46823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48688	0.46823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83485000	60219000	23265000	0	0	0	0	0	0	83485000	60219000	23265000	0	0	0	21246	2061	20110	130531	176883	176883	2130		1	
GTLLGESLK	1	Unmodified	916.52295	0.52294707	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	43.558	42.737	2	1.6141E-05	36718	160511_QHF_FH_JSI11i_2	108.74	74.946			0.94951	0.99237	26.529	5	1	Median	1.1737	0.99237	NaN	1	0	Median	0.71461	0.88185	NaN	1	0	Median	0.86212	0.88304	NaN	1	0	Median	1.2202	1.337	31.99	2	1	Median	332710000	172200000	160520000	54098000	24742000	29356000	77658000	45892000	31765000	94975000	50004000	44970000	105980000	51557000	54428000	21247	554	20111	130532;130533;130534;130535;130536	176884;176885;176886;176887;176888	176886			5	
GTLMELGISPIVTSGLIMQLLAGAK	1	Unmodified	2512.4009	0.40085337	1960	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	103.12	95.536	3	2.276E-52	57531	160513_QHF_FH_JSI10Kac_6	175.77	159.05			0.82817	0.95383	32.237	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6297	0.7594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0892	1.198	NaN	1	1	Median	291710000	191370000	100340000	0	0	0	288330000	190210000	98114000	0	0	0	3385400	1157800	2227600	21248	1960	20112	130537;130538	176889;176890;176891	176891			3	
GTLNLDK	1	Unmodified	759.41267	0.41266834	5808				yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		10.472	10.091	2	0.0062806	7885	160511_QHF_FH_JSI9i_2	92.191	0	+		1.1178	1.0237	13.875	2	1	Median	1.348	1.1292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92692	0.92803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	177620000	79617000	98006000	74108000	34809000	39299000	0	0	0	103510000	44808000	58707000	0	0	0	21249	5808	20113	130539;130540	176892;176893	176892			2	
GTLNPGLTKPPVPR	1	Acetyl (K)	1487.846	0.84601255	3850	Q92585	MAML1	Mastermind-like protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.373						1	5				3	2	1	70.334	59.782	2;3	7.6689E-30	31948	160513_QHF_FH_JSI10Kac_4	161.99	142.2			1.1671	1.1582	16.98	5	0	Median	NaN	NaN	NaN	0	0	Median	0.75175	0.89232	6.6282	2	0	Median	1.1871	1.1671	1.0818	2	0	Median	1.1671	1.2718	NaN	1	0	Median	60506000	30819000	29687000	0	0	0	29757000	16538000	13220000	20912000	9341100	11571000	9837100	4940100	4897000	21250	3850	20114	130541;130542;130543;130544;130545;130546	176894;176895;176896;176897;176898;176899;176900;176901	176895	2960		8	
GTLNSNAAYEQSHFFNK	1	Unmodified	1926.886	0.88603946	2944	Q5T3J3	LRIF1	Ligand-dependent nuclear receptor-interacting factor 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		47.017	47.017	3	5.6352E-11	41551	160511_QHF_FH_JSI11i_3	145.04	135.99			0.87748	0.79514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87748	0.79514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39636000	14386000	25250000	0	0	0	0	0	0	39636000	14386000	25250000	0	0	0	21251	2944	20115	130547	176902	176902			1	
GTLPAQEGPSGSKPLR	1	Acetyl (K)	1635.858	0.8580338	3182	Q6ZRI6	C15orf39	Uncharacterized protein C15orf39	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.484						5	3				3	3	2	49.259	39.533	2;3	0.00075635	21254	160513_QHF_FH_JSI10Kac_3	77.593	63.174			0.73834	0.84174	61.321	8	1	Median	NaN	NaN	NaN	0	0	Median	0.71808	0.84174	5.1051	3	0	Plateau	1.0285	0.9925	20.522	3	0	Median	0.38373	0.4167	131.72	2	1	Median	27023000	16681000	10341000	0	0	0	13125000	8557400	4567400	8346800	4430200	3916600	5551200	3693800	1857400	21252	3182	20116	130548;130549;130550;130551;130552;130553;130554;130555	176903;176904;176905;176906;176907;176908;176909;176910;176911;176912;176913	176912	2790		11	
GTLPAVEPFQR	0	Unmodified	1213.6455	0.64552182	959	P0DPB6			yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	6		1					1				1	1		57.398	56.5	2	0.0002828	49891	160511_QHF_FH_JSI10i_2	90.15	59.896			0.78228	0.98826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78228	0.98826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40904000	24123000	16781000	0	0	0	40904000	24123000	16781000	0	0	0	0	0	0	21253	959	20117	130556;130557	176914;176915	176915			2	
GTLQHAEIFLK	1	Unmodified	1255.6925	0.69247202	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.64		5	7					1	9	5	4	6	7	51.52	47.456	2;3	3.5569E-18	40237	160511_QHF_FH_JSI12i_3	178.46	161.62			1.0568	0.991	39.249	18	4	Median	1.455	1.2284	22.883	4	2	Median	0.84074	0.99884	35.663	4	1	Median	0.77548	0.80091	50.689	5	0	Median	0.81252	0.83509	30.1	5	1	Median	2076800000	1022100000	1054600000	94096000	47019000	47078000	196190000	101250000	94932000	876720000	443500000	433220000	909770000	430370000	479400000	21254	1397	20118	130558;130559;130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570;130571;130572;130573;130574;130575;130576;130577;130578;130579	176916;176917;176918;176919;176920;176921;176922;176923;176924;176925;176926;176927;176928;176929;176930;176931;176932;176933;176934;176935;176936;176937;176938;176939;176940;176941;176942;176943	176939			28	
GTLQHAEIFLKNLK	2	Acetyl (K)	1652.925	0.92499115	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.292	68.977	3	0.0002086	37733	160513_QHF_FH_JSI11Kac_6	96.247	78.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17270000	17270000	0	0	0	0	0	0	0	17270000	17270000	0	0	0	0	21255	1397	20119	130580	176944	176944	1356		1	
GTLQQFVDNFFQSVLAPGHAVPPAVK	1	Unmodified	2766.4493	0.4493352	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		99.051	90.961	3;4	1.2327E-28	51580	160513_QHF_FH_JSI11Kac_6	146.04	133.36			0.95419	0.8964	19.719	3	1	Median	0.85628	0.74856	NaN	1	1	Median	0.96314	1.1099	NaN	1	0	Median	0.95419	0.8964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	270480000	120480000	150000000	65742000	23870000	41871000	60435000	23054000	37380000	144300000	73553000	70751000	0	0	0	21256	236	20120	130581;130582;130583	176945;176946;176947	176945			2	
GTLSDEHAGVISVLAQQAAK	1	Unmodified	1994.0433	0.043268383	341	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	68.782	68.301	2;3	9.7924E-55	58955	160511_QHF_FH_JSI12i_3	212.92	197.53			0.94707	0.97841	9.7196	6	0	Median	0.93276	0.81146	NaN	1	0	Median	0.80597	0.96756	NaN	1	0	Median	0.98304	0.963	9.715	2	0	Median	0.99716	1.0211	4.465	2	0	Median	1703500000	931520000	771930000	123450000	60070000	63375000	154790000	96073000	58718000	116550000	53763000	62788000	1308700000	721610000	587050000	21257	341	20121	130584;130585;130586;130587;130588;130589	176948;176949;176950;176951;176952;176953;176954;176955;176956	176956			8	
GTLSFIAK	1	Unmodified	835.48035	0.48035398	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11	5.66			1					2		1		2		50.893	45.47	2	0.002353	39858	160511_QHF_FH_JSI11i_3	89.296	41.122			1.2541	1.1839	26.468	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2541	1.1839	26.468	2	2	Median	NaN	NaN	NaN	0	0	Median	160460000	74711000	85752000	0	0	0	0	0	0	160460000	74711000	85752000	0	0	0	21258	179	20122	130590;130591;130592	176957;176958;176959	176957			3	
GTLSGWILSK	1	Unmodified	1060.5917	0.59169534	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.6	2	3	4				1	2	4	4	6	3	3	72.246	68.134	2	1.106E-57	57398	160511_QHF_FH_JSI10i_3	239.49	159.89			0.90744	0.85827	8.8841	15	0	Median	0.98497	0.842	7.4567	4	0	Median	0.75641	0.82235	5.6517	5	0	Median	1.0477	1.0039	12.507	3	0	Plateau	0.93724	0.94091	2.991	3	0	Median	26537000000	11954000000	14584000000	5690800000	2423400000	3267400000	6239600000	3173600000	3066000000	8477900000	3417700000	5060300000	6128900000	2939000000	3189900000	21259	1299	20123	130593;130594;130595;130596;130597;130598;130599;130600;130601;130602;130603;130604;130605;130606;130607;130608	176960;176961;176962;176963;176964;176965;176966;176967;176968;176969;176970;176971;176972;176973;176974;176975;176976;176977;176978;176979;176980;176981;176982;176983;176984;176985;176986;176987;176988;176989;176990;176991;176992;176993;176994;176995;176996;176997;176998;176999;177000;177001;177002;177003;177004;177005	176968			45	
GTLSQMSGELSK	1	Unmodified	1236.602	0.60200203	2615	Q15047	SETDB1	Histone-lysine N-methyltransferase SETDB1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.726	40.26	2	0.00018472	34530	160511_QHF_FH_JSI11i_2	97.452	82.301			10.131	9.9423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.131	9.9423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13141000	1889000	11252000	0	0	0	0	0	0	13141000	1889000	11252000	0	0	0	21260	2615	20124	130609	177006	177006			1	
GTLTEAFPVLGGK	1	Unmodified	1288.7027	0.70270235	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		81.005	70.437	2	5.4818E-06	37358	160513_QHF_FH_JSI11Kac_5	103.55	72.125			0.69406	0.6665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69406	0.6665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2598000	1438000	1160000	0	0	0	0	0	0	2598000	1438000	1160000	0	0	0	21261	1316	20125	130610	177007	177007			1	
GTLTLCPYHSDR	0	Unmodified	1418.6612	0.66124824	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	1	1	5	2	38.04	34.184	2;3	1.8973E-07	29579	160511_QHF_FH_JSI11i_3	133.23	105.75			0.96643	0.91238	15.465	8	4	Median	1.0778	0.91205	NaN	1	0	Median	0.74484	0.9127	NaN	1	0	Median	0.96643	0.91262	10.695	4	3	Median	1.0405	1.1091	29.528	2	1	Median	577810000	301310000	276500000	35523000	13625000	21898000	83184000	48584000	34600000	394810000	211220000	183600000	64289000	27884000	36405000	21262	2370	20126	130611;130612;130613;130614;130615;130616;130617;130618;130619	177008;177009;177010;177011;177012;177013;177014;177015	177008			7	
GTLTVTNYR	0	Unmodified	1023.5349	0.53490874	2452	Q13614	MTMR2	Myotubularin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.22	6.46		4						5		2	3	2	2	33.796	27.984	2	2.2355E-09	24732	160511_QHF_FH_JSI10i_2	167.24	141.13			1.5466	1.5533	44.065	9	5	Linear	1.1839	1.0101	41.77	2	1	Median	0.61753	0.73424	33.288	3	2	Median	1.3615	1.3626	74.423	2	1	Median	0.94179	1.0196	56.352	2	1	Median	211970000	81365000	130600000	46088000	18734000	27354000	45284000	22510000	22774000	72111000	21480000	50631000	48483000	18642000	29841000	21263	2452	20127	130620;130621;130622;130623;130624;130625;130626;130627;130628	177016;177017;177018;177019;177020;177021;177022;177023;177024;177025	177024			10	
GTLVGDILR	0	Unmodified	942.54983	0.54983053	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			62.328	61.426	2	0.00011482	54459	160511_QHF_FH_JSI10i_2	92.439	46.721			1.0585	1.079	3.578	2	0	Median	1.292	1.1066	NaN	1	0	Median	0.86717	1.052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44101000	23484000	20618000	21051000	11108000	9943300	23050000	12376000	10675000	0	0	0	0	0	0	21264	3230	20128	130629;130630	177026;177027	177027			1	
GTLVQTK	1	Unmodified	745.4334	0.43340378	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.06	5	4	3		3	5	3	5	4	6	8	8	10	12.551	7.3853	1;2	1.1845E-13	5324	160513_QHF_FH_JSI9Kac_3	151.29	43.619			0.95826	0.98326	26.119	28	2	Median	1.1437	0.97511	36.218	5	1	Median	0.76185	0.91738	31.128	8	0	Median	1.2246	1.2133	13.469	7	0	Median	0.90897	0.96993	18.434	8	1	Median	47248000000	22238000000	25010000000	11928000000	5011100000	6916400000	11432000000	6097800000	5334700000	10936000000	4608600000	6327900000	12951000000	6520400000	6431000000	21265	969;1097;1099;1098	20129	130631;130632;130633;130634;130635;130636;130637;130638;130639;130640;130641;130642;130643;130644;130645;130646;130647;130648;130649;130650;130651;130652;130653;130654;130655;130656;130657;130658;130659;130660;130661;130662	177028;177029;177030;177031;177032;177033;177034;177035;177036;177037;177038;177039;177040;177041;177042;177043;177044;177045;177046;177047;177048;177049;177050;177051;177052;177053;177054;177055;177056;177057;177058;177059;177060;177061;177062;177063;177064;177065;177066;177067;177068;177069;177070;177071;177072;177073;177074;177075;177076;177077;177078;177079;177080	177052			53	
GTLVQTKGTGASGSFK	2	Unmodified	1537.81	0.81002097	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	25.522	24.636	3	0.0001272	20367	160511_QHF_FH_JSI10i_3	70.98	58.834			0.63132	0.50272	47.412	3	1	Plateau	0.63132	0.50272	NaN	1	0	Median	0.58336	0.67928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2308	1.2732	NaN	1	1	Median	92711000	52091000	40620000	49718000	28729000	20990000	28204000	17639000	10565000	0	0	0	14788000	5722900	9065600	21266	969;1097;1099;1098	20130	130663;130664;130665	177081;177082;177083;177084	177082			4	
GTLVQTKGTGASGSFK	2	Acetyl (K)	1579.8206	0.82058566	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.4						1	4				2	1	2	51.072	40.923	2	5.1573E-16	22767	160513_QHF_FH_JSI10Kac_4	139.89	122.45			0.62861	0.71083	23.181	3	0	Median	NaN	NaN	NaN	0	0	Median	0.62861	0.71083	NaN	1	0	Median	0.56465	0.55531	NaN	1	0	Median	0.82347	0.88253	NaN	1	0	Median	12773000	8360200	4412500	0	0	0	2539800	1592500	947330	6341000	4346000	1995000	3891900	2421800	1470200	21267	969;1097;1099;1098	20130	130666;130667;130668;130669;130670	177085;177086;177087;177088;177089;177090;177091	177085	735;736		7	
GTMDDISQEEGSSQGEDSVSGSQR	0	Unmodified	2485.0147	0.014682964	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	34.646	34.041	2;3	3.6693E-242	30530	160511_QHF_FH_JSI11i_1	341.37	330.31			1.1146	1.1145	7.4772	8	0	Median	1.451	1.1982	5.602	2	0	Median	0.87882	1.0392	5.4102	2	0	Median	1.1472	1.1129	4.6753	2	0	Median	1.0507	1.0793	9.5005	2	0	Median	438210000	216890000	221310000	80356000	35723000	44633000	114140000	61466000	52674000	136360000	66567000	69796000	107350000	53136000	54212000	21268	2560	20131	130671;130672;130673;130674;130675;130676;130677;130678	177092;177093;177094;177095;177096;177097;177098;177099;177100;177101;177102;177103;177104;177105	177092			14	
GTMDPALR	0	Unmodified	859.42219	0.42218717	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	20.988	20.487	2	0.0030807	16859	160511_QHF_FH_JSI11i_2	75.243	43.954			1.0111	1.0904	11.256	6	0	Median	1.3569	1.1618	NaN	1	0	Median	0.83643	1.0121	15.98	2	0	Median	1.0855	1.0904	0.22978	2	0	Median	0.85728	0.90416	NaN	1	0	Median	1577800000	815680000	762110000	177260000	84589000	92674000	527130000	281190000	245940000	625800000	316610000	309190000	247600000	133300000	114300000	21269	686	20132	130679;130680;130681;130682;130683;130684	177106;177107;177108;177109;177110;177111	177110			5	
GTMIPSEAPLLHR	0	Unmodified	1420.7497	0.74966932	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	3	3	56.558	55.771	2;3	1.4288E-05	49057	160511_QHF_FH_JSI9i_2	107.17	97.114			1.0302	1.0082	19.918	10	3	Median	1.4746	1.2302	24.904	2	0	Median	0.91689	1.0841	15.049	2	0	Median	1.0738	0.98546	9.1442	3	2	Plateau	1.0138	1.0429	23.632	3	1	Median	1242600000	601400000	641190000	97490000	42894000	54596000	216040000	115820000	100220000	522290000	252140000	270150000	406770000	190540000	216220000	21270	3960	20133	130685;130686;130687;130688;130689;130690;130691;130692;130693;130694	177112;177113;177114;177115;177116;177117;177118;177119;177120;177121;177122;177123;177124;177125	177117			13	
GTMTTGHNVADLVVILK	1	Unmodified	1767.9553	0.955305	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	78.983	78.399	2;3	7.3798E-53	67863	160511_QHF_FH_JSI12i_3	224.16	207.53			0.96327	0.94818	7.9152	12	0	Median	1.078	0.93343	2.2736	2	0	Median	0.85157	1.0382	12.875	2	0	Median	0.9866	0.95522	5.1877	4	0	Median	0.9365	0.97419	9.7214	4	0	Median	1235800000	648700000	587120000	74057000	34920000	39137000	120170000	67350000	52820000	362200000	189700000	172500000	679400000	356740000	322660000	21271	2324	20134	130695;130696;130697;130698;130699;130700;130701;130702;130703;130704;130705;130706	177126;177127;177128;177129;177130;177131;177132;177133;177134;177135;177136;177137;177138;177139;177140;177141;177142;177143	177142			18	
GTMVTIEGPR	0	Unmodified	1059.5383	0.53827956	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1				1	2	2	39.13	35.989	2	0.00054653	30692	160511_QHF_FH_JSI12i_2	93.649	69.494			1.2882	1.2652	21.921	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2882	1.2652	3.9796	2	1	Median	1.3222	1.4482	35.26	2	0	Median	302340000	133350000	168990000	0	0	0	0	0	0	89370000	43574000	45795000	212980000	89779000	123200000	21272	2354	20135	130707;130708;130709;130710;130711	177144;177145;177146;177147	177145			2	
GTNDMKQQHVIETLIGK	2	Acetyl (K)	1952.999	0.99896073	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1			By MS/MS		15.3	0.471								2	1			3		78.332	68.153	2;3	4.2301E-11	36166	160513_QHF_FH_JSI11Kac_5	119.8	106.95			0.21684	0.21584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21684	0.21584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83083000	79224000	3858800	0	0	0	0	0	0	83083000	79224000	3858800	0	0	0	21273	1630	20136	130712;130713;130714	177148;177149;177150;177151	177149	1644		4	
GTNDMKQQHVIETLIGK	2	Acetyl (K);Oxidation (M)	1968.9939	0.99387535	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		75.561	64.896	3	7.4844E-05	34542	160513_QHF_FH_JSI11Kac_5	78.78	75.286			0.30168	0.2999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30168	0.2999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18057000	13956000	4101300	0	0	0	0	0	0	18057000	13956000	4101300	0	0	0	21274	1630	20136	130715	177152;177153	177153	1644	1303	2	
GTNDMKQQHVIETLIGKK	3	Acetyl (K)	2081.0939	0.093923745	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		73.438	64.055	3	0.011204	34780	160513_QHF_FH_JSI11Kac_6	61.767	47.726			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10568000	10568000	0	0	0	0	0	0	0	10568000	10568000	0	0	0	0	21275	1630	20137	130716	177154	177154	1644		1	
GTNESLER	0	Unmodified	904.42502	0.42502394	913	P08670	VIM	Vimentin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	7.9534	4.1118	2	8.4742E-10	4963	160511_QHF_FH_JSI12i_1	160.88	84.745			0.99199	1.0414	9.3609	8	0	Median	1.3009	1.0768	NaN	1	0	Median	0.94632	1.1283	3.771	2	0	Median	0.90872	1.0014	7.0496	3	0	Plateau	1.0102	1.0658	13.103	2	0	Median	2212000000	1107200000	1104800000	532450000	252130000	280310000	601150000	314280000	286870000	481140000	224420000	256720000	597210000	316340000	280880000	21276	913	20138	130717;130718;130719;130720;130721;130722;130723;130724	177155;177156;177157;177158;177159;177160;177161;177162;177163;177164;177165;177166	177157			12	
GTNIQENEYVK	1	Unmodified	1293.6201	0.62009493	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	30.207	25.52	2	5.2961E-07	15229	160513_QHF_FH_JSI11Kac_3	107.24	61.247			0.9917	0.99621	13.66	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95325	0.90449	NaN	1	1	Median	1.0317	1.0972	NaN	1	1	Median	93471000	49579000	43892000	0	0	0	0	0	0	2088600	989530	1099100	91383000	48589000	42793000	21277	4387	20139	130725;130726	177167;177168	177168			2	
GTNSYYK	1	Unmodified	831.37628	0.37628284	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.81		5					3			2	3	2	1	9.842	4.6749	2	0.0087592	6025	160511_QHF_FH_JSI10i_2	71.296	53.734			0.84577	0.89351	11.056	5	2	Median	NaN	NaN	NaN	0	0	Median	0.75779	0.93148	14.677	2	1	Median	0.9394	0.92191	4.426	2	1	Median	0.71193	0.77574	NaN	1	0	Median	301830000	146300000	155530000	0	0	0	122070000	63469000	58601000	169920000	77478000	92438000	9844800	5353800	4491100	21278	939	20140	130727;130728;130729;130730;130731;130732;130733;130734	177169;177170;177171;177172;177173;177174;177175;177176	177176			8	
GTNVNQLNYR	0	Unmodified	1177.584	0.5839842	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		6	5.66		2					1			1		2		31.751	22.629	2	0.00054066	19406	160511_QHF_FH_JSI9i_2	82.75	63.479			0.72155	0.68103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72155	0.68103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1175400	656510	518880	0	0	0	0	0	0	1175400	656510	518880	0	0	0	21279	2179	20141	130735;130736;130737	177177;177178;177179	177178			3	
GTPAGTTPGASQAPK	1	Unmodified	1339.6732	0.67319314	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	16.768	14.127	2	2.6447E-21	12039	160511_QHF_FH_JSI12i_1	173.72	144.99			0.88197	0.93565	16.176	6	0	Median	0.87132	0.7213	NaN	1	0	Median	0.73638	0.87488	NaN	1	0	Median	1.1607	1.1102	1.2202	2	0	Median	0.88168	0.93565	0.24291	2	0	Median	636380000	335960000	300420000	167370000	86839000	80534000	175570000	96529000	79043000	144460000	69072000	75387000	148980000	83519000	65458000	21280	3411	20142	130738;130739;130740;130741;130742;130743	177180;177181;177182;177183;177184;177185;177186;177187	177182			8	
GTPEETGSYLVSK	1	Unmodified	1366.6616	0.6616254	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	38.172	37.265	2	2.7965E-07	33295	160511_QHF_FH_JSI10i_1	97.911	84.558			1.2827	1.1654	8.6922	2	0	Median	1.3581	1.0959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2116	1.2393	NaN	1	0	Median	109260000	46882000	62376000	41891000	15308000	26584000	0	0	0	0	0	0	67367000	31574000	35793000	21281	5270	20143	130744;130745;130746;130747	177188;177189;177190	177189			2	
GTPEPGPLNAVDER	0	Unmodified	1450.7052	0.70522155	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	42.957	42.035	2	0.0002487	38116	160511_QHF_FH_JSI12i_1	84.821	70.13			0.64163	0.58847	7.1258	2	1	Median	0.76155	0.61888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5406	0.55955	NaN	1	0	Median	94040000	63840000	30200000	21041000	13327000	7713900	0	0	0	0	0	0	72999000	50514000	22486000	21282	5393	20144	130748;130749	177191;177192	177191			2	
GTPFETPDQGK	1	Unmodified	1175.5459	0.54586736	2852	Q53FV1;Q9P0S3;Q8N138	ORMDL2;ORMDL1;ORMDL3	ORM1-like protein 2;ORM1-like protein 1;ORM1-like protein 3	yes	no	0	0	0	0				By MS/MS	1	0	1												1	28.633	28.07	2	0.031165	25086	160511_QHF_FH_JSI12i_1	47.228	21.289			0.26322	0.27006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26322	0.27006	NaN	1	1	Median	70309000	52137000	18172000	0	0	0	0	0	0	0	0	0	70309000	52137000	18172000	21283	2852	20145	130750	177193	177193			1	
GTPGKGATPAPPGK	2	Acetyl (K)	1276.6776	0.67755023	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	31.812	23.488	2	0.0033835	11169	160513_QHF_FH_JSI10Kac_2	66.262	44.799			0.87913	0.97051	3.1259	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86554	0.9922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89293	0.9493	NaN	1	0	Median	7361600	4297600	3064000	0	0	0	4086400	2348900	1737500	0	0	0	3275300	1948800	1326500	21284	2409	20146	130751;130752	177194;177195	177194	2475		2	
GTPGPDSSGSLGSGEFTGVK	1	Unmodified	1835.8537	0.85373628	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	50.049	49.374	2	3.1921E-18	44409	160511_QHF_FH_JSI10i_1	156.24	126.04			1.0033	0.97216	6.3549	5	2	Median	1.1409	0.93986	NaN	1	0	Median	0.88339	1.0515	NaN	1	0	Median	1.0033	0.97216	NaN	1	0	Median	0.97041	0.99707	9.6897	2	2	Median	487830000	247230000	240600000	111950000	51607000	60340000	76085000	48816000	27269000	97274000	42077000	55197000	202520000	104730000	97792000	21285	5230	20147	130753;130754;130755;130756;130757	177196;177197;177198;177199;177200;177201;177202;177203	177201			8	
GTPGPPPAHGAALQPHPR	0	Unmodified	1756.9121	0.91213505	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							4	3	2	1	21.415	20.644	3;4	2.4901E-09	16689	160511_QHF_FH_JSI9i_3	109.07	97.554			0.92356	0.95793	12.844	10	1	Median	1.1506	0.94661	16.258	4	1	Median	0.84817	0.98662	5.1249	3	0	Plateau	0.90882	0.83075	12.236	2	0	Median	0.90098	0.93007	NaN	1	0	Median	1122600000	563730000	558830000	462830000	210870000	251960000	526680000	293180000	233500000	109760000	48795000	60965000	23298000	10883000	12415000	21286	2697	20148	130758;130759;130760;130761;130762;130763;130764;130765;130766;130767	177204;177205;177206;177207;177208;177209;177210;177211;177212;177213;177214;177215;177216;177217;177218	177214			13	
GTPLDTEVPMER	0	Unmodified	1343.6391	0.63911582	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	50.778	50.104	2	4.1859E-07	44521	160511_QHF_FH_JSI9i_1	109.42	87.955			1.0247	1.0747	5.9677	5	3	Median	1.3431	1.0879	NaN	1	1	Median	1.0206	1.1983	NaN	1	0	Median	1.0552	1.024	NaN	1	0	Median	1.0135	1.0635	1.4858	2	2	Median	1225700000	595000000	630680000	268000000	122430000	145570000	252780000	122740000	130040000	270960000	136740000	134220000	433940000	213090000	220850000	21287	1002	20149	130768;130769;130770;130771;130772;130773	177219;177220;177221;177222;177223;177224;177225	177225			7	
GTPLELVNGDGVDSEIR	0	Unmodified	1769.8796	0.8795571	5236	Q9UBF8	PI4KB	Phosphatidylinositol 4-kinase beta	yes	yes	0	0	0	0		By MS/MS			8.5	7.5	1								1		2			77.988	71.922	2;3	0.0014623	65702	160511_QHF_FH_JSI10i_1	70.332	54.078			0.80363	0.95936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80363	0.95936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74668000	41588000	33080000	0	0	0	74668000	41588000	33080000	0	0	0	0	0	0	21288	5236	20150	130774;130775	177226;177227	177226			2	
GTPLISPLIK	1	Unmodified	1037.6485	0.64848194	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.27	4	4	4			1	3	4	1	5	5	5	6	68.212	62.945	2	1.2297E-10	57903	160511_QHF_FH_JSI11i_2	141.2	125.76			0.944	1.0367	12.744	21	0	Median	1.3093	1.0875	8.3125	5	0	Median	0.92914	1.0746	4.1958	5	0	Median	0.93513	0.91444	7.6553	5	0	Median	0.93991	0.9934	15.809	6	0	Median	7310200000	3701100000	3609100000	1452000000	639700000	812350000	1621400000	876050000	745350000	2443900000	1210100000	1233800000	1792800000	975250000	817570000	21289	1650	20151	130776;130777;130778;130779;130780;130781;130782;130783;130784;130785;130786;130787;130788;130789;130790;130791;130792;130793;130794;130795;130796	177228;177229;177230;177231;177232;177233;177234;177235;177236;177237;177238;177239;177240;177241;177242;177243;177244;177245;177246;177247;177248;177249;177250;177251;177252;177253;177254;177255;177256;177257;177258;177259;177260;177261;177262;177263;177264;177265;177266;177267;177268;177269;177270;177271;177272;177273;177274;177275;177276;177277;177278;177279	177265			52	
GTPLPTYEEAK	1	Unmodified	1204.5976	0.59756858	643	O95084	PRSS23	Serine protease 23	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.783	34.55	2	0.034069	30408	160511_QHF_FH_JSI9i_1	47.894	36.3			0.98825	0.81367	NaN	1	0	Median	0.98825	0.81367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46809000	26816000	19993000	46809000	26816000	19993000	0	0	0	0	0	0	0	0	0	21290	643	20152	130797	177280	177280			1	
GTPMKPNTQATPP	1	Unmodified	1338.6602	0.66018561	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	24.568	24.041	2	0.022749	21331	160511_QHF_FH_JSI12i_1	75.294	56.023			0.30979	0.33091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30979	0.33091	NaN	1	1	Median	43141000	30136000	13005000	0	0	0	0	0	0	0	0	0	43141000	30136000	13005000	21291	834	20153	130798	177281	177281			1	
GTPPLTPSDSPQTR	0	Unmodified	1452.7209	0.72087161	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.31	29.037	2	0.012077	25205	160511_QHF_FH_JSI9i_1	56.225	45.074			1.129	0.9215	NaN	1	1	Median	1.129	0.9215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17681000	10017000	7664200	17681000	10017000	7664200	0	0	0	0	0	0	0	0	0	21292	3086	20154	130799	177282	177282			1	
GTPQEPR	0	Unmodified	783.38752	0.38751622	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	6.2108	4.5258	2	0.011149	2479	160513_QHF_FH_JSI12Kac_3	81.191	34.82			1.508	1.3819	12.706	5	4	Median	1.5298	1.2457	NaN	1	1	Median	1.1871	1.3819	NaN	1	1	Median	1.508	1.4836	NaN	1	1	Median	1.3798	1.4957	19.845	2	1	Median	4412100000	1654000000	2758200000	863210000	347310000	515900000	1040000000	445110000	594860000	1563200000	427250000	1135900000	945810000	434280000	511530000	21293	595	20155	130800;130801;130802;130803;130804	177283;177284;177285;177286;177287	177287			5	
GTPQKDVIIK	2	Acetyl (K);Acetyl (Protein N-term)	1181.6656	0.66558856	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						2	1	2	64.792	55.34	2	0.00027671	22211	160513_QHF_FH_JSI10Kac_1	77.677	71.756			0.29431	0.29934	127.78	5	0	Median	NaN	NaN	NaN	0	0	Median	2.6261	3.0246	10.957	2	0	Median	0.29431	0.28838	NaN	1	0	Median	0.28403	0.29695	1.1342	2	0	Median	158840000	92995000	65842000	0	0	0	69001000	23900000	45101000	29921000	22866000	7055800	59914000	46229000	13685000	21294	1803	20156	130805;130806;130807;130808;130809	177288;177289;177290;177291;177292;177293	177291	1820		6	
GTPQQIDYAR	0	Unmodified	1147.5622	0.56218613	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			2	5	3	3	26.596	22.147	2	7.4535E-26	19433	160511_QHF_FH_JSI10i_1	193.38	144.82			0.8878	0.95598	8.8657	13	2	Median	1.0501	0.86934	3.7583	2	0	Median	0.78096	0.95598	6.277	5	2	Median	1.0654	1.0209	9.9278	3	0	Median	0.8878	0.94621	7.3408	3	0	Plateau	4446500000	2422200000	2024300000	1067700000	538400000	529280000	1036200000	616280000	419930000	1012300000	574230000	438050000	1330300000	693310000	637030000	21295	3966	20157	130810;130811;130812;130813;130814;130815;130816;130817;130818;130819;130820;130821;130822	177294;177295;177296;177297;177298;177299;177300;177301;177302;177303;177304;177305;177306;177307;177308;177309;177310	177301			17	
GTPSGTQSSR	0	Unmodified	976.45739	0.4573867	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	3.5738	3.2349	2	0.010413	1653	160511_QHF_FH_JSI12i_1	48.283	20.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21296	4936	20158	130823	177311	177311			1	
GTPSQSPVVGR	0	Unmodified	1083.5673	0.5672715	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.14	4.45	4	2					1			2	2	2	1	16.204	14.644	2	0.0089309	9503	160513_QHF_FH_JSI11Kac_4	55.549	45.962			0.88291	0.95773	14.419	7	2	Median	1.0052	0.86434	14.509	2	1	Median	0.7486	0.88686	15.293	2	1	Median	1.0157	1.0125	21.038	2	0	Median	0.99241	1.0074	NaN	1	0	Median	513420000	263750000	249660000	162800000	69549000	93252000	128800000	80941000	47863000	106030000	52456000	53574000	115780000	60809000	54974000	21297	1774	20159	130824;130825;130826;130827;130828;130829;130830	177312;177313;177314;177315;177316;177317	177313			5	
GTPWEGGLFK	1	Unmodified	1090.5447	0.54474515	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1		2	3	3	66.853	64.864	2	1.8238E-05	57687	160511_QHF_FH_JSI10i_2	110.41	77.145			1.1252	1.23	28.347	7	7	Median	NaN	NaN	NaN	0	0	Median	1.0073	1.2038	3.0443	2	2	Median	1.2759	1.275	11.265	2	2	Median	1.3701	1.4789	44.754	3	3	Median	2277200000	983910000	1293300000	0	0	0	526220000	227180000	299040000	916690000	399960000	516730000	834270000	356770000	477500000	21298	2063	20160	130831;130832;130833;130834;130835;130836;130837;130838	177318;177319;177320;177321;177322;177323;177324;177325	177323			8	
GTQCVEQIQELVLR	0	Unmodified	1671.8614	0.86140461	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.39	76.757	2	0.0061432	67426	160511_QHF_FH_JSI11i_2	52.247	30.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21299	5205	20161	130839	177326	177326			1	
GTQEVLKYLR	1	Acetyl (K)	1247.6874	0.68738664	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.117	62.351	2	0.0094735	33305	160513_QHF_FH_JSI11Kac_5	68.893	40.88			0.79578	0.79761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79578	0.79761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3816500	2383100	1433400	0	0	0	0	0	0	3816500	2383100	1433400	0	0	0	21300	4803	20162	130840	177327	177327	3239		1	
GTQGAEEVLR	0	Unmodified	1058.5356	0.53563702	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.496	20.313	2	4.2365E-05	17137	160511_QHF_FH_JSI9i_1	94.409	65.239			1.0818	0.87143	NaN	1	0	Median	1.0818	0.87143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	262100000	122100000	140000000	262100000	122100000	140000000	0	0	0	0	0	0	0	0	0	21301	2636	20163	130841	177328	177328			1	
GTQGATAGASSELDASK	1	Unmodified	1549.722	0.72199382	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	3	2	2	23.897	20.374	2	2.8956E-183	17682	160511_QHF_FH_JSI12i_1	313.88	297.21			1.0416	1.1203	21.167	7	0	Median	1.2895	1.0529	NaN	1	0	Median	1.1449	1.334	20.188	2	0	Median	1.1237	1.0945	32.802	2	0	Median	0.94271	0.99675	16.527	2	0	Median	764580000	374780000	389790000	223190000	102300000	120880000	177410000	91851000	85556000	193250000	100550000	92701000	170740000	80082000	90654000	21302	602	20164	130842;130843;130844;130845;130846;130847;130848;130849	177329;177330;177331;177332;177333;177334;177335;177336;177337;177338;177339;177340	177333			12	
GTQGVVTNFEIFR	0	Unmodified	1466.7518	0.75177781	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.82	3	4	2					4	4	3	5	5	4	77.977	73.312	2	1.463E-149	38574	160513_QHF_FH_JSI11Kac_6	299.42	269.65			0.96187	0.98054	13.923	17	3	Median	1.2344	1.0552	1.3839	3	0	Plateau	0.81496	0.97143	10.344	5	2	Median	0.99376	0.97796	15.283	5	1	Median	1.0166	1.114	18.424	4	0	Median	2683200000	1363300000	1319800000	366150000	161080000	205080000	457470000	281010000	176450000	980430000	485940000	494490000	879100000	435320000	443780000	21303	1867	20165	130850;130851;130852;130853;130854;130855;130856;130857;130858;130859;130860;130861;130862;130863;130864;130865;130866	177341;177342;177343;177344;177345;177346;177347;177348;177349;177350;177351;177352;177353;177354;177355;177356;177357;177358;177359;177360;177361;177362;177363;177364;177365;177366;177367;177368;177369;177370;177371	177349			31	
GTQLLSSGSDGLVK	1	Unmodified	1360.7198	0.71980898	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				50.362	49.153	2	0.0010014	43751	160511_QHF_FH_JSI9i_1	82.774	43.362			1.2081	1.0077	NaN	1	1	Median	1.2081	1.0077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66798000	30828000	35970000	66798000	30828000	35970000	0	0	0	0	0	0	0	0	0	21304	2304	20166	130867	177372	177372			1	
GTQNIPAGKPSLQTSSAR	1	Unmodified	1811.949	0.94897407	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	1	By MS/MS				3	0			3							3				28.184	26.816	3	8.3837E-05	21765	160511_QHF_FH_JSI9i_3	71.085	61.163			1.3651	1.1675	NaN	1	1	Median	1.3651	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8402100	5441500	2960600	8402100	5441500	2960600	0	0	0	0	0	0	0	0	0	21305	3386	20167	130868;130869;130870	177373;177374;177375	177375			3	
GTQPSTAR	0	Unmodified	816.40898	0.40897995	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.8	3	1	1							1	1	1	2	2.581	2.3877	2	7.2141E-05	1044	160511_QHF_FH_JSI11i_1	133.12	15.06			0.9746	0.98528	11.163	5	0	Median	1.324	1.1338	NaN	1	0	Median	0.81157	0.97823	NaN	1	0	Median	1.0554	0.98528	NaN	1	0	Median	0.90258	0.9085	13.076	2	0	Median	266580000	136460000	130120000	20626000	9761100	10865000	81549000	40381000	41168000	69916000	36425000	33491000	94490000	49894000	44596000	21306	4989	20168	130871;130872;130873;130874;130875	177376;177377;177378;177379;177380;177381;177382;177383;177384;177385	177378			10	
GTQSLPTASASK	1	Unmodified	1146.5881	0.58806652	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	20.432	16.986	2	3.4545E-07	14065	160511_QHF_FH_JSI9i_1	183.03	155.78			0.27812	0.29274	77.903	7	4	Median	0.21914	0.18135	NaN	1	1	Median	0.44819	0.52751	107.18	2	1	Median	0.50344	0.48506	99.267	2	1	Median	0.46933	0.50583	77.345	2	1	Median	1664300000	1345700000	318640000	542730000	438920000	103800000	361540000	298250000	63286000	312940000	248290000	64653000	447140000	360240000	86903000	21307	5709	20169	130876;130877;130878;130879;130880;130881;130882	177386;177387;177388;177389;177390;177391;177392;177393;177394	177391			9	
GTQTYSVLEGDPSENYSK	1	Unmodified	1973.8854	0.88543034	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.141	48.46	2	4.5199E-99	43841	160511_QHF_FH_JSI11i_1	265.95	258.22			1.0359	1.0122	3.5287	4	0	Median	1.1796	0.97573	NaN	1	0	Median	0.83349	0.98451	NaN	1	0	Median	1.0583	1.0425	NaN	1	0	Median	1.014	1.0406	NaN	1	0	Median	440720000	228100000	212620000	85188000	40714000	44474000	143850000	74459000	69390000	114670000	63557000	51115000	97013000	49371000	47642000	21308	1778	20170	130883;130884;130885;130886	177395;177396;177397;177398;177399;177400;177401;177402;177403;177404;177405;177406	177397			12	
GTQVYSPEKGR	1	Acetyl (K)	1262.6255	0.62551466	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		29.331	20.802	2	0.0054199	12854	160513_QHF_FH_JSI11Kac_3	63.283	52.132			0.3919	0.38412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3919	0.38412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7785800	5691400	2094400	0	0	0	0	0	0	7785800	5691400	2094400	0	0	0	21309	552	20171	130887	177407	177407	289		1	
GTRDDEYDYLFK	1	Acetyl (Protein N-term)	1562.6889	0.68890278	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.4	65.799	2	2.9934E-11	59904	160511_QHF_FH_JSI12i_1	82.749	47.335			1.1618	1.1693	9.7515	4	0	Median	1.2366	1.003	NaN	1	0	Median	1.0524	1.2282	NaN	1	0	Median	1.1641	1.1132	NaN	1	0	Median	1.1595	1.2319	NaN	1	0	Median	3795100000	1770100000	2025000000	885690000	415170000	470520000	1022800000	447090000	575730000	1041200000	477470000	563700000	845430000	430390000	415040000	21310	2009;2722	20172	130888;130889;130890;130891	177408;177409;177410;177411;177412	177410			5	
GTRPEDSSVLIPTDNSTPHK	1	Unmodified	2150.0604	0.060375011	90	L0R819	ASNSD1		yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	35.037	34.794	3;4	1.5201E-05	30256	160511_QHF_FH_JSI11i_3	71.073	61.285			1.0665	0.82249	16.253	5	2	Linear	NaN	NaN	NaN	0	0	Median	0.71286	0.87924	NaN	1	1	Median	0.93353	0.88069	9.6686	2	0	Median	0.67555	0.6942	16.937	2	1	Median	295810000	165040000	130770000	0	0	0	46829000	25755000	21073000	153830000	86626000	67203000	95153000	52660000	42493000	21311	90	20173	130892;130893;130894;130895;130896;130897	177413;177414;177415;177416;177417;177418;177419;177420;177421;177422	177414			10	
GTSAEQDNRFSNKQK	2	Acetyl (K)	1750.8234	0.8234392	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	1	0	0	2		By MS/MS			14	0							1				1			20.401	10.608	3	0.0049262	8210	160513_QHF_FH_JSI10Kac_4	66.797	55.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1340300	0	1340300	0	0	0	1340300	0	1340300	0	0	0	0	0	0	21312	3463	20174	130898	177423	177423	2863		1	
GTSFDAAATSGGSASSEK	1	Unmodified	1629.7118	0.71182307	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.81	5.82	8				3	5				2	4	5	5	26.129	21.73	2;3	2.6835E-117	18941	160511_QHF_FH_JSI10i_1	333.31	316.64			0.99207	0.99299	18.345	16	0	Median	1.1442	0.94378	1.4612	2	0	Median	0.78879	0.93465	17.894	4	0	Median	0.9568	0.94224	18.171	5	0	Median	1.1079	1.1611	12.18	5	0	Median	2519700000	1198200000	1321500000	623030000	245060000	377970000	578710000	300330000	278380000	536820000	287060000	249760000	781170000	365790000	415380000	21313	1041	20175	130899;130900;130901;130902;130903;130904;130905;130906;130907;130908;130909;130910;130911;130912;130913;130914	177424;177425;177426;177427;177428;177429;177430;177431;177432;177433;177434;177435;177436;177437;177438;177439;177440;177441;177442;177443;177444;177445;177446	177435			22	
GTSGSLADVFANTR	0	Unmodified	1394.679	0.6790068	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	3	2	59.247	58.587	2	1.6263E-10	51883	160511_QHF_FH_JSI11i_3	114.24	94.968			0.98316	0.98603	17.438	6	1	Median	1.5799	1.3317	NaN	1	0	Median	0.65614	0.79943	NaN	1	0	Median	1.126	1.0684	12.39	2	1	Median	0.91615	0.98603	0.4096	2	0	Median	210240000	105240000	105000000	40047000	16476000	23570000	35661000	21182000	14478000	70187000	36538000	33649000	64345000	31047000	33298000	21314	5202	20176	130915;130916;130917;130918;130919;130920;130921;130922	177447;177448;177449;177450;177451;177452;177453;177454;177455;177456;177457;177458;177459	177448			13	
GTSISTKPPLTK	2	Unmodified	1228.7027	0.70270235	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							5	3	2	2	25.765	25.01	2;3	1.9765E-31	20626	160511_QHF_FH_JSI12i_3	196.48	151.32			1.0368	1.0512	22.301	11	2	Median	1.2989	1.0886	30.948	4	2	Median	0.90453	1.0468	8.7532	3	0	Median	0.88071	0.82637	6.3849	2	0	Median	1.058	1.0657	1.9424	2	0	Median	2197000000	1093900000	1103200000	303310000	130430000	172880000	367550000	180070000	187480000	412540000	210890000	201650000	1113600000	572490000	541140000	21315	1428	20177	130923;130924;130925;130926;130927;130928;130929;130930;130931;130932;130933;130934	177460;177461;177462;177463;177464;177465;177466;177467;177468;177469;177470;177471;177472;177473;177474;177475;177476;177477;177478;177479;177480	177480			21	
GTSISTKPPLTK	2	Acetyl (K)	1270.7133	0.71326704	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.661					3	4	1				3	2	3	49.491	40.221	2;3	2.1165E-24	21893	160513_QHF_FH_JSI12Kac_3	172.8	132.08			0.93465	1.0184	18.71	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79432	0.94899	10.517	2	0	Median	1.2087	1.1794	33.784	2	0	Median	0.98112	1.0515	5.0409	2	0	Median	116280000	60409000	55872000	0	0	0	39869000	22923000	16946000	22190000	10307000	11883000	54222000	27179000	27043000	21316	1428	20177	130935;130936;130937;130938;130939;130940;130941;130942	177481;177482;177483;177484;177485;177486;177487;177488	177485	1388		8	
GTSIVVPEPLHFLLPGKK	2	Unmodified	1931.1244	0.12441924	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	92.149	91.621	4	2.3875E-05	78900	160511_QHF_FH_JSI12i_3	74.786	73.64			1.0331	0.98266	13.273	4	0	Median	1.3808	1.1495	NaN	1	0	Median	0.74263	0.86237	NaN	1	0	Median	0.97799	0.91123	NaN	1	0	Median	1.0913	1.0597	NaN	1	0	Median	92513000	51731000	40782000	12882000	7268700	5613600	14675000	8753700	5921100	19945000	10106000	9839000	45011000	25602000	19408000	21317	5013	20178	130943;130944;130945;130946	177489;177490;177491;177492;177493;177494;177495;177496	177496			8	
GTSKEDAMK	2	Acetyl (K);Oxidation (M)	1023.4543	0.45427516	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	1	1			By MS/MS	By MS/MS	12.3	0.471					2	1						2	1	6.799	-0.4545	2	0.002754	2553	160513_QHF_FH_JSI11Kac_3	72.243	56.581			0.47713	0.45422	30.298	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42601	0.41116	14.086	2	0	Median	0.63861	0.67492	NaN	1	0	Median	14163000	9718800	4444400	0	0	0	0	0	0	9562600	6821200	2741400	4600700	2897600	1703100	21318	863	20179	130947;130948;130949	177497;177498;177499;177500	177499	553;554	397	4	
GTSLNVVVLNNSK	1	Unmodified	1343.7409	0.74087877	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		63.196	52.132	2	0.059314	29448	160513_QHF_FH_JSI11Kac_4	39.917	29.685			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21319	201	20180	130950	177501	177501			1	
GTSSFGK	1	Unmodified	682.3286	0.32860436	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.11	4	4	4			1	3	4		4	6	4	6	7.37	3.4653	2	0.0079954	4458	160511_QHF_FH_JSI12i_1	85.359	11.385			0.96132	0.98548	18.511	19	3	Median	1.2541	1.0174	25.776	4	1	Median	0.85724	1.0266	9.9192	6	0	Median	0.91364	0.90413	21.207	4	0	Median	0.98654	1.064	11.963	5	2	Median	12421000000	6236500000	6184500000	2722100000	1324200000	1397900000	3570400000	1864500000	1705900000	2455900000	1121700000	1334300000	3672700000	1926200000	1746500000	21320	1967	20181	130951;130952;130953;130954;130955;130956;130957;130958;130959;130960;130961;130962;130963;130964;130965;130966;130967;130968;130969;130970	177502;177503;177504;177505;177506;177507;177508;177509;177510;177511;177512;177513;177514;177515;177516;177517;177518;177519;177520;177521;177522;177523;177524	177507			23	
GTSSFGKR	1	Acetyl (K)	880.44028	0.44028008	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	2	2	2	2	17.165	8.427	2	2.0173E-22	6901	160513_QHF_FH_JSI11Kac_5	178.6	123.16			0.83666	0.95655	21.133	8	0	Median	1.2219	1.0593	5.416	2	0	Median	0.94981	1.1311	17.619	2	0	Median	0.74466	0.73728	10.089	2	0	Median	0.7491	0.82529	14.795	2	0	Median	119250000	65777000	53469000	11800000	5050700	6749400	31531000	16333000	15198000	33059000	20288000	12771000	42856000	24105000	18751000	21321	1967	20182	130971;130972;130973;130974;130975;130976;130977;130978	177525;177526;177527;177528;177529;177530;177531;177532;177533;177534;177535;177536;177537	177533	1989		13	
GTSSHLPPPPK	1	Unmodified	1116.5928	0.59275797	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.62	5.43		3	3					2		2		3	3	16.533	13.586	3	0.0043198	10928	160511_QHF_FH_JSI12i_3	42.243	34.172			0.89782	0.96026	15.521	7	3	Median	1.0472	0.88955	22.133	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91098	0.89139	12.02	3	1	Plateau	0.98925	1.0493	9.0181	2	0	Median	384900000	188980000	195920000	64142000	36212000	27930000	0	0	0	155300000	78929000	76369000	165460000	73844000	91621000	21322	5646	20183	130979;130980;130981;130982;130983;130984;130985;130986	177538;177539;177540;177541;177542;177543;177544;177545	177544			8	
GTSTYDGFGLAWAISEYIATK	1	Unmodified	2250.0845	0.084464496	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.907	85.226	3	0.05057	75686	160511_QHF_FH_JSI10i_2	17.824	8.454			0.73191	0.68952	21.627	4	0	Linear	1.41	1.2104	NaN	1	0	Median	0.67888	0.82944	NaN	1	0	Median	0.78558	0.79463	NaN	1	0	Median	0.68192	0.75183	NaN	1	0	Median	221590000	118560000	103030000	38784000	19742000	19042000	44843000	20546000	24297000	63114000	38397000	24717000	74848000	39875000	34973000	21323	1557	20184	130987;130988;130989;130990	177546;177547	177547			2	
GTSVVLICPQDGMEAIPNPFIQQQDA	0	Unmodified	2827.3521	0.35206528	5359	Q9UK45	LSM7	U6 snRNA-associated Sm-like protein LSm7	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			74.506	73.066	3	0.044155	61232	160511_QHF_FH_JSI10i_3	18.497	2.4011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13655000	13655000	0	0	0	0	13655000	13655000	0	0	0	0	0	0	0	21324	5359	20185	130991	177548	177548			1	
GTSYQSPHGIPIDLLDR	0	Unmodified	1867.9428	0.94282606	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	3	3	4	71.433	70.779	2;3	3.6609E-22	61188	160511_QHF_FH_JSI12i_3	200.44	183.91			0.97624	1.0309	13.526	12	3	Median	1.3035	1.1101	10.957	2	0	Median	0.66016	0.82471	18.75	3	2	Plateau	1.0492	1.0345	7.5235	3	0	Plateau	0.92778	0.98596	16.653	4	1	Median	2278700000	1229900000	1048800000	224810000	116130000	108680000	376130000	265440000	110700000	963980000	485010000	478970000	713810000	363370000	350440000	21325	5487	20186	130992;130993;130994;130995;130996;130997;130998;130999;131000;131001;131002;131003	177549;177550;177551;177552;177553;177554;177555;177556;177557;177558;177559;177560;177561;177562;177563;177564;177565	177565			17	
GTTAVLTEK	1	Unmodified	918.50221	0.50221163	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	5.97	8	1			3	4	3			4	6	4	5	20.055	15.098	1;2	5.6298E-33	10899	160513_QHF_FH_JSI11Kac_3	198.65	150.8			0.86493	0.85823	15.065	19	1	Median	1.122	1.0082	24.088	4	0	Linear	0.74657	1.1374	13.013	6	1	Linear	0.86945	0.84832	8.391	4	0	Median	0.85847	0.85731	9.0521	5	0	Plateau	5692200000	3004600000	2687600000	1663800000	782890000	880920000	1370700000	780920000	589750000	1218600000	633110000	585480000	1439100000	807640000	631490000	21326	4267	20187	131004;131005;131006;131007;131008;131009;131010;131011;131012;131013;131014;131015;131016;131017;131018;131019;131020;131021;131022	177566;177567;177568;177569;177570;177571;177572;177573;177574;177575;177576;177577;177578;177579;177580;177581;177582;177583;177584;177585;177586;177587;177588;177589;177590;177591;177592;177593;177594	177576			28	
GTTEEVCR	0	Unmodified	950.41274	0.4127447	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	6.6372	6.3028	2	0.00027867	4276	160511_QHF_FH_JSI12i_1	113.91	88.168			1.1985	1.1432	17.259	4	0	Median	1.5467	1.2526	NaN	1	0	Median	0.87374	1.0434	NaN	1	0	Median	1.0332	0.9969	NaN	1	0	Median	1.3902	1.4497	NaN	1	0	Median	319560000	153430000	166130000	42340000	14721000	27620000	77168000	41955000	35212000	80152000	48510000	31642000	119900000	48245000	71658000	21327	40	20188	131023;131024;131025;131026	177595;177596;177597	177595			3	
GTTGLPQEVHVLNLR	0	Unmodified	1632.8948	0.89475365	2205	Q03167	TGFBR3	Transforming growth factor beta receptor type 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.494	62.213	3	0.00019729	53651	160511_QHF_FH_JSI12i_3	67.102	60.664			1.2454	1.2049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2454	1.2049	NaN	1	0	Median	44276000	18633000	25643000	0	0	0	0	0	0	0	0	0	44276000	18633000	25643000	21328	2205	20189	131027	177598;177599	177598			2	
GTTGTQASFLQLFEGDDHK	1	Unmodified	2050.9596	0.95959833	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	82.67	82.251	3	3.8691E-16	73281	160511_QHF_FH_JSI11i_3	154.48	137.99			1.4175	1.0496	27.901	5	4	Plateau	2.0644	1.7959	NaN	1	1	Median	1.4175	1.7482	NaN	1	1	Median	1.6227	1.5724	35.295	2	2	Median	1.0218	1.0496	NaN	1	0	Median	594450000	272070000	322380000	56727000	19497000	37230000	81935000	40071000	41864000	269690000	117240000	152450000	186100000	95268000	90836000	21329	1359	20190	131028;131029;131030;131031;131032	177600;177601;177602;177603;177604;177605;177606	177600			7	
GTTGTQASFLQLFEGDDHKVEQLDK	2	Unmodified	2763.3352	0.33515289	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	84.515	84.176	4	4.7266E-17	75055	160511_QHF_FH_JSI11i_3	124	112.85			0.87279	0.93633	17.249	4	1	Median	1.2865	1.1064	NaN	1	0	Median	0.83771	1.0002	NaN	1	1	Median	0.90934	0.87653	NaN	1	0	Median	0.73216	0.74257	NaN	1	0	Median	317190000	161640000	155550000	43531000	19394000	24137000	63687000	25696000	37991000	175540000	99479000	76063000	34430000	17069000	17361000	21330	1359	20191	131033;131034;131035;131036	177607;177608;177609;177610;177611;177612;177613	177607			7	
GTTITLVLK	1	Unmodified	944.59063	0.59063271	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.8	3	4	4		1	2	3	17	5	6	12	9	12	65.289	57.886	2	3.9848E-24	31319	160513_QHF_FH_JSI11Kac_5	185.84	166.13			0.94757	1.0023	26.012	37	6	Median	1.1439	0.95667	29.946	5	1	Median	0.79186	0.95196	25.632	12	2	Median	1.1459	1.1398	28.118	8	1	Median	0.97674	1.0393	20.975	12	2	Median	2211700000	1106800000	1104900000	320550000	152020000	168540000	582910000	331590000	251320000	622920000	292210000	330710000	685320000	331020000	354300000	21331	1057	20192	131037;131038;131039;131040;131041;131042;131043;131044;131045;131046;131047;131048;131049;131050;131051;131052;131053;131054;131055;131056;131057;131058;131059;131060;131061;131062;131063;131064;131065;131066;131067;131068;131069;131070;131071;131072;131073;131074;131075	177614;177615;177616;177617;177618;177619;177620;177621;177622;177623;177624;177625;177626;177627;177628;177629;177630;177631;177632;177633;177634;177635;177636;177637;177638;177639;177640;177641;177642;177643;177644;177645;177646;177647;177648;177649;177650;177651;177652;177653;177654;177655;177656;177657;177658;177659;177660;177661;177662;177663;177664;177665;177666;177667;177668;177669	177644			55	
GTTKPVNWLK	2	Unmodified	1142.6448	0.64479354	5026	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.167	30.102	3	0.057425	25337	160511_QHF_FH_JSI12i_3	29.063	19.175			1.6276	1.6278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6276	1.6278	NaN	1	1	Median	90013000	48900000	41113000	0	0	0	0	0	0	0	0	0	90013000	48900000	41113000	21332	5026	20193	131076	177670	177670			1	
GTTPLHVAAK	1	Unmodified	993.56073	0.56072956	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	14.721	14.262	2	6.23E-05	11374	160511_QHF_FH_JSI12i_3	90.657	68.526			0.8195	0.7493	59.807	2	0	Median	0.59786	0.4909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1233	1.1437	NaN	1	0	Median	56548000	30280000	26268000	23020000	12258000	10762000	0	0	0	0	0	0	33528000	18022000	15506000	21333	5545	20194	131077;131078;131079	177671;177672	177672			2	
GTTTVDGAGFGIDRPAELSK	1	Unmodified	1990.996	0.99598384	3435	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		54.629	54.629	3	0.00034642	48397	160511_QHF_FH_JSI11i_3	58.577	48.52			1.6283	1.5244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6283	1.5244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21862000	5916100	15946000	0	0	0	0	0	0	21862000	5916100	15946000	0	0	0	21334	3435	20195	131080	177673	177673			1	
GTTVTPDK	1	Unmodified	817.41815	0.41814765	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.99	6				1	1				1	4	2	1	7.7641	6.0465	2	0.00027425	4759	160511_QHF_FH_JSI9i_1	114.28	67.855			0.59288	0.57015	41.357	5	3	Median	1.0982	0.89675	NaN	1	0	Median	0.5639	0.65392	58.689	2	1	Median	0.59288	0.57015	NaN	1	1	Median	0.37662	0.40039	NaN	1	1	Median	3894600000	2615700000	1278900000	688350000	310010000	378330000	1212200000	901980000	310230000	948300000	645880000	302420000	1045800000	757880000	287890000	21335	2726	20196	131081;131082;131083;131084;131085;131086;131087;131088	177674;177675;177676;177677;177678;177679;177680;177681;177682	177680			9	
GTVAYVGATLFATGK	1	Unmodified	1454.7769	0.77692993	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			76.186	72.426	2	1.4593E-24	38774	160513_QHF_FH_JSI10Kac_6	189.33	156.8			0.85927	0.85677	14.952	2	0	Median	1.1286	0.95232	NaN	1	0	Median	0.65418	0.77081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58650000	31719000	26932000	10711000	4297100	6413500	47940000	27422000	20518000	0	0	0	0	0	0	21336	2516	20197	131089;131090;131091	177683;177684;177685	177685			3	
GTVDGPR	0	Unmodified	700.3504	0.35040244	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.6064	4.9999	2	0.013218	2882	160511_QHF_FH_JSI9i_1	71.141	37.591			0.81751	0.67913	NaN	1	1	Median	0.81751	0.67913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	326800000	193980000	132820000	326800000	193980000	132820000	0	0	0	0	0	0	0	0	0	21337	1857	20198	131092	177686	177686			1	
GTVEGFEPADNK	1	Unmodified	1262.5779	0.57789577	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	2	3	33.391	29.277	2	3.0982E-65	25958	160511_QHF_FH_JSI11i_1	236.35	204.85			0.85693	0.92073	13.456	7	0	Median	1.1298	0.92073	NaN	1	0	Median	0.76989	0.90838	14.869	2	0	Median	1.0209	1.0237	0.2142	2	0	Median	0.72743	0.7811	11.198	2	0	Median	1134700000	597560000	537170000	273390000	127860000	145530000	304850000	166680000	138170000	231410000	110470000	120940000	325080000	192550000	132530000	21338	1466	20199	131093;131094;131095;131096;131097;131098;131099;131100	177687;177688;177689;177690;177691;177692;177693;177694;177695;177696;177697;177698;177699;177700	177687			14	
GTVEPQLEAR	0	Unmodified	1098.5669	0.56693715	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	5.99	4	1			1	3	3			1	5	3	3	30.35	24.93	2	3.1824E-44	14977	160513_QHF_FH_JSI11Kac_3	211.52	176.23			0.92563	0.97751	10.745	12	1	Median	1.2772	1.0204	NaN	1	0	Median	0.81368	0.94699	16.485	5	1	Median	0.99777	0.96955	7.8879	3	0	Median	0.95693	1.0172	2.7746	3	0	Median	4549100000	2415000000	2134200000	951860000	460740000	491120000	1220700000	666220000	554470000	1266500000	705870000	560600000	1110100000	582130000	527970000	21339	1192	20200	131101;131102;131103;131104;131105;131106;131107;131108;131109;131110;131111;131112	177701;177702;177703;177704;177705;177706;177707;177708;177709;177710;177711;177712;177713;177714;177715;177716;177717;177718;177719;177720;177721;177722;177723;177724;177725	177709			25	
GTVGEPTYDAEFQHFLR	0	Unmodified	1965.9221	0.92209062	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	72.469	71.833	2;3	4.9618E-31	62360	160511_QHF_FH_JSI12i_3	190.82	181.54			1.0361	1.0487	11.161	6	0	Median	1.0716	0.93768	NaN	1	0	Median	0.83893	1.018	NaN	1	0	Median	1.1069	1.0782	13.056	2	0	Median	1.1063	1.1639	10.524	2	0	Median	1442800000	710510000	732330000	104240000	51186000	53054000	243090000	129020000	114070000	552090000	265360000	286730000	543420000	264950000	278470000	21340	2517	20201	131113;131114;131115;131116;131117;131118;131119;131120;131121	177726;177727;177728;177729;177730;177731;177732	177731			7	
GTVGSILDR	0	Unmodified	916.49779	0.49779495	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.317	35.253	2	0.013169	29924	160511_QHF_FH_JSI12i_3	46.813	20.641			1.3639	1.3314	16.426	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2731	1.1854	NaN	1	0	Median	1.4612	1.4954	NaN	1	0	Median	134570000	58996000	75578000	0	0	0	0	0	0	67378000	28660000	38718000	67195000	30335000	36860000	21341	1945	20202	131122;131123	177733;177734	177734			2	
GTVGSILDRKDETK	2	Acetyl (K)	1559.8155	0.81550028	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	51.512	41.003	3	0.0011626	22806	160513_QHF_FH_JSI11Kac_5	77.42	62.432			0.76076	0.89706	23.634	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76076	0.89706	NaN	1	0	Median	0.69404	0.68386	NaN	1	0	Median	1.001	1.0951	NaN	1	0	Median	57945000	30143000	27802000	0	0	0	10447000	5781000	4666200	34970000	17582000	17388000	12527000	6779600	5747800	21342	1945	20203	131124;131125;131126	177735	177735	1951		1	
GTVHIFALK	1	Unmodified	984.57565	0.57565135	5613	Q9Y484	WDR45	WD repeat domain phosphoinositide-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	1	2	2	53.185	46.505	2;3	0.00072554	25443	160513_QHF_FH_JSI11Kac_6	62.823	47.672			1.4243	1.4007	33.008	7	1	Median	2.2928	1.9605	21.657	2	1	Median	1.2271	1.4007	NaN	1	0	Median	1.2103	1.1413	28.923	2	0	Median	1.1886	1.2827	44.59	2	0	Median	286830000	135470000	151350000	61190000	18558000	42631000	59494000	27327000	32167000	79291000	42494000	36797000	86851000	47093000	39758000	21343	5613	20204	131127;131128;131129;131130;131131;131132;131133	177736;177737;177738;177739;177740;177741	177736			6	
GTVIIIANHGDR	0	Unmodified	1264.6888	0.68878362	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	3.07			1					7	8	4	4	5	3	38.977	29.524	2;3	1.0031E-39	15899	160513_QHF_FH_JSI9Kac_6	215.56	178.87			0.97119	0.95394	4.9476	15	1	Median	1.1414	0.95142	6.3258	4	0	Median	0.79785	0.95416	6.6571	4	0	Median	0.9919	0.9269	3.2497	4	0	Linear	0.87352	0.91045	4.7688	3	1	Plateau	589350000	301440000	287910000	151130000	75578000	75555000	211190000	105470000	105720000	178030000	96440000	81590000	49001000	23959000	25042000	21344	2772	20205	131134;131135;131136;131137;131138;131139;131140;131141;131142;131143;131144;131145;131146;131147;131148;131149	177742;177743;177744;177745;177746;177747;177748;177749;177750;177751;177752;177753;177754;177755;177756;177757;177758;177759;177760;177761;177762;177763;177764;177765;177766;177767;177768;177769;177770;177771;177772	177763			31	
GTVLAEDQLAQMSK	1	Unmodified	1489.7446	0.74464352	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.185	55.02	2	0.00033037	48903	160511_QHF_FH_JSI9i_1	101.39	83.581			1.6833	1.3749	NaN	1	1	Median	1.6833	1.3749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21856000	5492000	16364000	21856000	5492000	16364000	0	0	0	0	0	0	0	0	0	21345	4102	20206	131150	177773	177773			1	
GTVLALTENNFDDTIAEGITFIK	1	Unmodified	2481.2639	0.26388542	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	102.09	101.97	3	7.674E-48	89762	160511_QHF_FH_JSI11i_2	200.29	197.53			1.1548	1.1684	32.384	3	0	Median	NaN	NaN	NaN	0	0	Median	0.60092	0.73885	NaN	1	0	Median	1.1548	1.1684	NaN	1	0	Median	1.2427	1.381	NaN	1	0	Median	743780000	345490000	398290000	0	0	0	163180000	92968000	70213000	329640000	151540000	178100000	250960000	100980000	149980000	21346	3603	20207	131151;131152;131153	177774;177775;177776;177777	177776			4	
GTVLIWQK	1	Unmodified	943.5491	0.54910224	5079	Q9NWX6	THG1L	Probable tRNA(His) guanylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.4	0.696							1	3	4	2	3	2	1	63.106	53.102	2	0.00077183	28132	160513_QHF_FH_JSI9Kac_6	106.04	58.193			0.96269	0.94008	9.9751	8	2	Median	1.0814	0.92923	6.4917	2	1	Median	0.7725	0.90839	8.38	3	1	Median	1.0777	1.0127	16.544	2	0	Median	0.94411	1.0458	NaN	1	0	Median	186580000	97066000	89517000	42844000	18936000	23908000	64545000	37471000	27074000	65103000	32812000	32292000	14089000	7847100	6242400	21347	5079	20208	131154;131155;131156;131157;131158;131159;131160;131161	177778;177779;177780;177781;177782;177783;177784	177784			7	
GTVLLADNVICPGAPDFLAHVR	0	Unmodified	2334.2154	0.21543586	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	97.698	97.632	3	8.5961E-14	84494	160511_QHF_FH_JSI12i_3	123.19	116.25			1.398	1.4121	40.367	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78355	0.76197	17.844	2	0	Median	1.4415	1.4804	NaN	1	0	Median	167950000	85208000	82745000	0	0	0	0	0	0	102400000	58356000	44039000	65557000	26852000	38706000	21348	1199	20209	131162;131163;131164	177785;177786;177787;177788	177787			4	
GTVLTLMR	0	Unmodified	889.50552	0.50552287	374	O43772	SLC25A20	Mitochondrial carnitine/acylcarnitine carrier protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.859	50.624	2	0.011461	43329	160511_QHF_FH_JSI12i_3	54.157	22.868			0.82121	0.84356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82121	0.84356	NaN	1	0	Median	37082000	20908000	16173000	0	0	0	0	0	0	0	0	0	37082000	20908000	16173000	21349	374	20210	131165	177789	177789			1	
GTVMVGKPSSHSQYTSSGSVSSSGSK	2	Acetyl (K)	2570.1919	0.19185947	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	44.846	34.713	3	0.0090562	19651	160513_QHF_FH_JSI11Kac_5	40.682	32.593			0.67487	0.79997	11.06	3	0	Median	NaN	NaN	NaN	0	0	Median	0.67487	0.79997	NaN	1	0	Median	0.95236	0.91365	NaN	1	0	Median	0.66828	0.73352	NaN	1	0	Median	9073700	4474200	4599400	0	0	0	5045100	2777100	2268000	2449600	856840	1592700	1579000	840310	738710	21350	2694	20211	131166;131167;131168	177790;177791	177790	2634		2	
GTVMVGKPSSHSQYTSSGSVSSSGSK	2	Acetyl (K);Oxidation (M)	2586.1868	0.18677409	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	1	1				By MS/MS	15	0								1					1	40.491	30.673	3	0.0014107	16430	160513_QHF_FH_JSI12Kac_5	55.469	50.943			0.76797	0.81633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76797	0.81633	NaN	1	0	Median	2263200	1385100	878040	0	0	0	0	0	0	0	0	0	2263200	1385100	878040	21351	2694	20211	131169	177792	177792	2634	2103	1	
GTVMYVGLTDFKPGYWIGVR	1	Unmodified	2258.1558	0.15579572	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.729	84.008	3	1.3639E-09	47695	160513_QHF_FH_JSI10Kac_6	110.56	95.97			0.55516	0.66528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55516	0.66528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124700000	79765000	44930000	0	0	0	124700000	79765000	44930000	0	0	0	0	0	0	21352	4266	20212	131170	177793;177794	177794			2	
GTVNSKLR	1	Acetyl (K)	915.51378	0.51377937	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	22.996	15.362	2	0.01833	9729	160513_QHF_FH_JSI12Kac_4	62.969	41.521			0.8317	0.86147	28.825	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71067	0.70262	NaN	1	0	Median	0.97333	1.0562	NaN	1	0	Median	15121000	7994800	7126000	0	0	0	0	0	0	6639500	3397500	3242000	8481300	4597300	3884000	21353	4294	20213	131171;131172	177795;177796;177797;177798	177797	3111		4	
GTVNTEEK	1	Unmodified	876.41888	0.41887593	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					1	2	2	5.6699	-1.5738	2	0.0019839	1690	160513_QHF_FH_JSI12Kac_2	94.114	43.149			1.0538	1.1367	11.712	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0483	1.241	NaN	1	1	Median	1.1575	1.1173	5.8634	2	1	Median	0.95647	1.0179	15.61	2	0	Median	32311000	16282000	16029000	0	0	0	4018400	1874100	2144300	18057000	8602900	9454400	10235000	5804700	4430100	21354	1679	20214	131173;131174;131175;131176;131177	177799;177800;177801;177802;177803	177803			5	
GTVPDDAVEALADSLGK	1	Unmodified	1656.8206	0.82064524	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	93.927	93.578	2;3	9.6408E-81	85134	160511_QHF_FH_JSI11i_1	243.88	220.51			1.0201	0.94474	5.14	8	0	Median	1.0998	0.91033	1.5047	2	0	Median	0.77481	0.91381	2.213	2	0	Median	1.0308	0.99431	0.52171	2	0	Median	0.9732	0.99617	5.0007	2	0	Median	851450000	441960000	409490000	174260000	82048000	92210000	241540000	141880000	99666000	249160000	128350000	120810000	186490000	89687000	96800000	21355	1181	20215	131178;131179;131180;131181;131182;131183;131184;131185;131186	177804;177805;177806;177807;177808;177809;177810;177811;177812;177813;177814;177815;177816;177817;177818;177819;177820;177821;177822;177823;177824;177825;177826;177827;177828;177829;177830;177831;177832;177833;177834;177835	177806			32	
GTVPDDAVEALADSLGKK	2	Unmodified	1784.9156	0.91560825	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3							3	4	2	4	84.973	84.373	3	9.4717E-10	73074	160511_QHF_FH_JSI12i_2	139.88	123			1.0417	1.0449	25.586	11	3	Median	1.2822	1.0321	28.216	3	1	Median	0.74534	0.9273	34.511	3	1	Median	0.9911	0.96206	11.678	2	0	Median	1.0621	1.176	22.993	3	1	Median	804700000	393790000	410900000	219890000	101490000	118400000	184660000	98679000	85980000	185230000	93514000	91714000	214920000	100110000	114810000	21356	1181	20216	131187;131188;131189;131190;131191;131192;131193;131194;131195;131196;131197;131198;131199	177836;177837;177838;177839;177840;177841;177842;177843;177844;177845;177846;177847;177848;177849;177850;177851;177852;177853;177854;177855;177856;177857;177858;177859;177860;177861	177841			25	
GTVQALHATGAR	0	Unmodified	1180.6313	0.63126874	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.67	5.54		2	5						2	2	3	4		14.771	12.323	2;3	9.6241E-11	10173	160511_QHF_FH_JSI10i_3	145.55	118.95			0.90472	0.9262	24.475	9	3	Median	1.3839	1.1619	56.62	2	1	Median	0.8135	0.92696	15.185	3	1	Median	1.0238	0.95699	6.9918	4	1	Linear	NaN	NaN	NaN	0	0	Median	328090000	170950000	157140000	50073000	19622000	30450000	167170000	92707000	74461000	110850000	58625000	52224000	0	0	0	21357	3278	20217	131200;131201;131202;131203;131204;131205;131206;131207;131208	177862;177863;177864;177865;177866;177867;177868;177869;177870;177871;177872;177873;177874;177875	177868			14	
GTVQGQLQGPISK	1	Unmodified	1311.7147	0.71466402	868	P07311	ACYP1	Acylphosphatase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.376	32.772	2	6.2298E-22	29221	160511_QHF_FH_JSI10i_1	170.4	155.14			1.0966	1.0976	19.026	4	0	Median	1.2821	1.0433	NaN	1	0	Median	0.97807	1.1548	NaN	1	0	Median	1.2295	1.1981	NaN	1	0	Median	0.75526	0.78683	NaN	1	0	Median	189700000	86447000	103250000	51977000	22455000	29522000	46050000	22602000	23448000	53000000	22194000	30806000	38671000	19196000	19475000	21358	868	20218	131209;131210;131211;131212	177876;177877;177878;177879;177880;177881;177882;177883	177881			8	
GTVQQADE	0	Unmodified	846.37193	0.37192574	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.52	5			2						2	2	2	1	6.9275	4.4948	2	3.4803E-07	2112	160513_QHF_FH_JSI11Kac_1	143.56	124.87			1.0745	1.0646	11.203	7	1	Median	1.2826	1.0573	11.907	2	1	Median	1.063	1.2422	2.805	2	0	Median	1.0865	1.0557	1.1875	2	0	Median	0.89168	0.9393	NaN	1	0	Median	1499000000	758220000	740820000	216570000	96048000	120530000	450420000	226870000	223550000	388860000	196240000	192620000	443180000	239060000	204120000	21359	1398	20219	131213;131214;131215;131216;131217;131218;131219	177884;177885;177886;177887;177888;177889;177890;177891;177892;177893;177894	177893			11	
GTVRDYPDFSPSVDAEAIQK	1	Unmodified	2194.0542	0.054227	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	61.046	60.523	3	1.3927E-05	53820	160511_QHF_FH_JSI11i_3	72.086	67.084			0.97839	1.5962	37.681	4	0	Linear	0.76825	0.67046	NaN	1	0	Median	0.76179	0.92922	NaN	1	0	Median	1.6771	1.5958	NaN	1	0	Median	1.246	1.2657	NaN	1	0	Median	215710000	100590000	115120000	42155000	24199000	17957000	51340000	29264000	22076000	65034000	26496000	38538000	57177000	20629000	36548000	21360	1018	20220	131220;131221;131222;131223	177895;177896;177897;177898;177899	177895			5	
GTVRPANDFNPDADAK	1	Unmodified	1686.7962	0.79616182	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.65	2	7	8				2	5		5	7	6	6	30.028	26.645	2;3	8.4615E-06	22209	160511_QHF_FH_JSI12i_3	114.63	102.65			0.93095	0.96645	31.446	23	2	Median	1.2779	1.0646	10.292	4	1	Median	0.78938	0.96645	20.482	7	0	Median	1.031	1.0017	24.687	6	0	Median	0.84303	0.88317	54.963	6	1	Median	2447300000	1207600000	1239700000	496650000	239810000	256840000	753360000	366320000	387040000	863320000	420800000	442510000	333940000	180670000	153280000	21361	891	20221	131224;131225;131226;131227;131228;131229;131230;131231;131232;131233;131234;131235;131236;131237;131238;131239;131240;131241;131242;131243;131244;131245;131246;131247	177900;177901;177902;177903;177904;177905;177906;177907;177908;177909;177910;177911;177912;177913;177914;177915;177916;177917;177918;177919;177920;177921;177922;177923;177924;177925;177926;177927;177928;177929;177930;177931;177932;177933;177934	177934			35	
GTVSLPSK	1	Unmodified	787.44397	0.44396847	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	23.193	22.563	2	0.0012624	19536	160511_QHF_FH_JSI11i_1	91.853	41.15			0.81462	0.79954	30.049	5	0	Median	0.69821	0.59378	40.797	2	0	Median	0.69525	0.83135	NaN	1	0	Median	0.81462	0.79954	NaN	1	0	Median	0.93346	0.97928	NaN	1	0	Median	541270000	289620000	251650000	117450000	68962000	48490000	124900000	70978000	53921000	138420000	69763000	68662000	160490000	79920000	80573000	21362	3215	20222	131248;131249;131250;131251;131252	177935;177936;177937;177938;177939;177940;177941	177936			7	
GTVTDFPGFDER	0	Unmodified	1339.6044	0.60444487	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.74	4	4					2	1		2	3	2	4	61.908	58.421	2	6.4605E-65	53238	160511_QHF_FH_JSI12i_1	232.84	213.57			0.96004	0.98344	13.903	11	5	Median	1.2052	0.99448	1.579	2	1	Median	0.72858	0.92045	3.3769	3	2	Plateau	0.83082	0.83107	1.9778	2	2	Median	0.99408	1.0793	11.315	4	0	Median	5410200000	2889400000	2520800000	1122400000	545160000	577220000	1195500000	689230000	506250000	2091500000	1115200000	976270000	1000800000	539790000	461040000	21363	916	20223	131253;131254;131255;131256;131257;131258;131259;131260;131261;131262;131263	177942;177943;177944;177945;177946;177947;177948;177949;177950;177951;177952;177953;177954;177955;177956	177946			15	
GTVTDFPGFDERADAETLR	0	Unmodified	2095.9811	0.98106206	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	66.672	65.786	3	1.2339E-09	56583	160511_QHF_FH_JSI12i_2	120.24	110.49			1.0453	0.96328	18.931	5	2	Median	1.1242	0.96328	NaN	1	0	Median	0.6796	0.8317	11.496	2	2	Median	1.0453	1.0606	NaN	1	0	Median	1.1814	1.2762	NaN	1	0	Median	341790000	178670000	163130000	66002000	34706000	31295000	143290000	87240000	56045000	75346000	35748000	39598000	57160000	20972000	36188000	21364	916	20224	131264;131265;131266;131267;131268	177957;177958;177959;177960;177961;177962;177963	177958			7	
GTVTDFPGFDERADAETLRK	1	Unmodified	2224.076	0.076025075	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	5	2	2	59.534	58.58	3;4	3.313E-33	51745	160511_QHF_FH_JSI10i_2	148.24	135.01			1.0869	1.0884	15.035	13	3	Median	1.127	0.9531	11.196	4	2	Median	1.047	1.2003	13.508	5	0	Median	1.1161	1.0971	1.1267	2	0	Median	0.92474	0.95336	14.234	2	1	Median	4001300000	1820800000	2180500000	1005300000	405280000	600060000	2070500000	965170000	1105300000	674690000	311260000	363430000	250710000	139050000	111660000	21365	916	20225	131269;131270;131271;131272;131273;131274;131275;131276;131277;131278;131279;131280;131281	177964;177965;177966;177967;177968;177969;177970;177971;177972;177973;177974;177975;177976;177977;177978;177979;177980;177981;177982;177983;177984;177985;177986;177987;177988;177989;177990;177991;177992	177987			29	
GTVTGQVQGPEDK	1	Unmodified	1314.6416	0.64155866	1056	P14621	ACYP2	Acylphosphatase-2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	17.779	17.293	2	3.1889E-22	14841	160511_QHF_FH_JSI12i_1	176.78	149.03			1.1711	1.0325	16.236	4	0	Median	1.1784	0.96141	NaN	1	0	Median	0.73772	0.85359	NaN	1	0	Median	1.1637	1.1088	NaN	1	0	Median	1.2118	1.2372	NaN	1	0	Median	136270000	70874000	65391000	34584000	16099000	18485000	38649000	25146000	13503000	30256000	14696000	15560000	32776000	14933000	17843000	21366	1056	20226	131282;131283;131284;131285	177993;177994;177995	177993			3	
GTVVAQGGGR	0	Unmodified	900.47773	0.47772821	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.33	0.471	4	2								2	2	1	1	6.8258	6.4686	2	0.00030866	4392	160511_QHF_FH_JSI10i_1	94.114	59.29			0.56132	0.53576	24.812	5	2	Median	0.87194	0.7416	21.86	2	2	Median	0.44233	0.53576	NaN	1	0	Median	0.56132	0.52633	NaN	1	0	Median	0.43384	0.45147	NaN	1	0	Median	277820000	169400000	108420000	77425000	40623000	36801000	65383000	44692000	20692000	71286000	42351000	28935000	63731000	41736000	21995000	21367	4704	20227	131286;131287;131288;131289;131290;131291	177996;177997;177998;177999;178000;178001	177998			6	
GTVVTGTLER	0	Unmodified	1031.5611	0.56112349	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.18	4	4	5		1	3	3	5	2	5	8	7	7	30.24	25.51	2	6.8369E-36	22212	160511_QHF_FH_JSI9i_2	211.45	152.24			1.0249	1.0535	12.284	25	5	Median	1.3149	1.0503	9.4021	5	0	Median	0.78872	0.93866	18.47	7	1	Median	1.1115	1.0724	11.808	6	2	Median	1.0162	1.0779	8.3977	7	2	Median	6311700000	3141800000	3169900000	1430000000	600800000	829220000	1485900000	821370000	664530000	1806800000	935790000	871050000	1588900000	783890000	805050000	21368	1658	20228	131292;131293;131294;131295;131296;131297;131298;131299;131300;131301;131302;131303;131304;131305;131306;131307;131308;131309;131310;131311;131312;131313;131314;131315;131316;131317;131318	178002;178003;178004;178005;178006;178007;178008;178009;178010;178011;178012;178013;178014;178015;178016;178017;178018;178019;178020;178021;178022;178023;178024;178025;178026;178027;178028;178029;178030;178031;178032;178033;178034;178035;178036;178037;178038;178039;178040;178041;178042	178023			40	
GTVVYGEPITASLGTDGSHYWSK	1	Unmodified	2424.1598	0.1597547	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	75.306	74.622	3	6.4173E-39	64541	160511_QHF_FH_JSI12i_2	195.39	191.44			0.98294	1.126	12.223	5	0	Median	1.3485	1.1456	NaN	1	0	Median	0.92713	1.126	NaN	1	0	Median	1.1775	1.1561	23.578	2	0	Median	0.98294	1.0705	NaN	1	0	Median	991190000	454010000	537180000	141230000	50612000	90620000	257920000	125260000	132660000	364420000	177480000	186930000	227610000	100650000	126960000	21369	2739	20229	131319;131320;131321;131322;131323;131324	178043;178044;178045;178046;178047;178048;178049;178050;178051;178052;178053;178054	178046			12	
GTVVYGEPITASLGTDGSHYWSKNWAK	2	Acetyl (K)	2965.4246	0.4246366	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.221	74.904	3	3.2356E-23	41399	160513_QHF_FH_JSI11Kac_6	163.62	147.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18987000	18987000	0	0	0	0	0	0	0	18987000	18987000	0	0	0	0	21370	2739	20230	131325	178055	178055	2659		1	
GTVYFKEGK	2	Acetyl (K)	1069.5444	0.5444108	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.49	33.354	2	1.4675E-05	20013	160513_QHF_FH_JSI11Kac_4	108.98	87.677			0.057583	0.056128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.057583	0.056128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5695200	5226700	468460	0	0	0	0	0	0	5695200	5226700	468460	0	0	0	21371	2193	20231	131326	178056	178056	2307		1	
GTVYLTPYR	0	Unmodified	1068.5604	0.56039521	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.05		3					1	4	2	3	2	3	2	48.095	40.895	2	0.00020074	22826	160513_QHF_FH_JSI11Kac_5	103.56	61.454			1.3477	1.3578	22.148	9	1	Median	1.3322	1.1401	39.75	2	1	Median	1.1841	1.4417	27.008	2	0	Median	1.3477	1.3578	10.161	3	0	Median	1.1525	1.2742	29.212	2	0	Median	236260000	95685000	140580000	9255300	4115300	5139900	58688000	24977000	33711000	107720000	40449000	67269000	60598000	26144000	34455000	21372	3949	20232	131327;131328;131329;131330;131331;131332;131333;131334;131335;131336	178057;178058;178059;178060;178061;178062;178063	178059			4	
GTWERPGGAAPLGYDFWYQPR	0	Unmodified	2423.1447	0.14471376	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	82.44	74.323	3	1.7851E-10	39061	160513_QHF_FH_JSI12Kac_6	94.463	86.471			1.0016	0.97653	12.522	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0026	1.203	NaN	1	0	Median	1.0016	0.97653	NaN	1	0	Median	0.90273	0.96118	NaN	1	0	Median	133160000	72600000	60563000	0	0	0	95761000	52451000	43310000	16460000	7854900	8605500	20941000	12293000	8647600	21373	2374	20233	131337;131338;131339	178064;178065	178064			1	
GTWESHPETTELVVLQGR	0	Unmodified	2038.012	0.011968255	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.012	62.869	3	3.2201E-23	54328	160511_QHF_FH_JSI12i_3	172.42	166.29			1.1515	1.1218	17.646	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0726	0.99023	NaN	1	0	Median	1.2361	1.2709	NaN	1	0	Median	181590000	80837000	100750000	0	0	0	0	0	0	69035000	38941000	30094000	112550000	41896000	70658000	21374	1463	20234	131340;131341	178066;178067	178067			2	
GTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVK	1	Unmodified	4147.9844	0.98436311	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	97.73	89.641	3;4	3.6691E-151	53502	160513_QHF_FH_JSI10Kac_6	252	243.3			0.97794	0.9341	12.102	6	0	Median	0.9842	0.85725	0.88275	2	0	Median	0.78632	0.9341	3.2007	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0412	1.0962	9.9142	2	0	Median	2352500000	1267500000	1085000000	568720000	287160000	281560000	1305000000	746870000	558160000	0	0	0	478750000	233450000	245300000	21375	1297	20235	131342;131343;131344;131345;131346;131347	178068;178069;178070;178071;178072;178073;178074;178075;178076;178077	178077			10	
GTWLASGSDDLK	1	Unmodified	1248.5986	0.59863121	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	2	2								1		2	1	48.511	47.978	2	1.231E-09	41977	160511_QHF_FH_JSI9i_2	117.71	90.591			0.98515	1.0316	14.98	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95302	0.96445	9.5207	2	2	Median	1.1904	1.216	NaN	1	0	Median	151310000	79360000	71946000	0	0	0	0	0	0	94361000	49615000	44747000	56945000	29745000	27200000	21376	2962	20236	131348;131349;131350;131351	178078;178079;178080;178081;178082;178083	178081			6	
GTWNGPWVSTEVLAAAIGLVIYYLAFSAK	1	Unmodified	3096.6324	0.63244453	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13.8	2.28				1	1				2		2	2		107.62	100.18	3	3.0791E-59	60301	160513_QHF_FH_JSI10Kac_6	178.7	167.07			0.94064	0.92255	21.458	3	1	Median	NaN	NaN	NaN	0	0	Median	0.84594	1.0004	29.617	2	1	Median	0.94064	0.92255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216830000	112660000	104170000	0	0	0	210630000	109780000	100850000	6201600	2881000	3320600	0	0	0	21377	1740	20237	131352;131353;131354;131355	178084;178085;178086;178087;178088;178089	178087			6	
GTWSTGLPK	1	Unmodified	945.49198	0.4919813	451	O60828	PQBP1	Polyglutamine-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.47	2	5	3					3		2	3	5	3	39.574	37.131	2	1.9288E-06	31618	160511_QHF_FH_JSI11i_2	114.5	65.994			0.75834	0.84949	46.077	11	3	Median	1.1532	0.97442	11.562	2	0	Median	0.69271	0.84444	49.388	3	1	Median	0.937	0.91026	63.322	4	2	Median	0.93396	0.98688	28.375	2	0	Median	874980000	523320000	351660000	97202000	45311000	51891000	246640000	164740000	81904000	334450000	201290000	133160000	196680000	111980000	84701000	21378	451	20238	131356;131357;131358;131359;131360;131361;131362;131363;131364;131365;131366;131367;131368	178090;178091;178092;178093;178094;178095;178096;178097;178098;178099;178100;178101;178102;178103;178104;178105;178106;178107	178101			17	
GTWVQLK	1	Unmodified	830.46504	0.46503826	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.64	5	4	4				1	4	4	4	8	5	5	44.244	39.358	2	3.1112E-07	20917	160513_QHF_FH_JSI9Kac_6	135.87	87.623			0.98081	1.0333	8.0124	20	1	Median	1.2643	1.0625	6.3586	4	0	Median	0.91968	1.1037	5.7656	6	1	Median	1.046	0.98974	7.962	5	0	Median	0.93761	1.0305	12.21	5	0	Median	11649000000	5525400000	6123900000	1641500000	690760000	950790000	2363700000	1095100000	1268600000	4012400000	1941700000	2070700000	3631700000	1797900000	1833800000	21379	1591	20239	131369;131370;131371;131372;131373;131374;131375;131376;131377;131378;131379;131380;131381;131382;131383;131384;131385;131386;131387;131388;131389;131390	178108;178109;178110;178111;178112;178113;178114;178115;178116;178117;178118;178119;178120;178121;178122;178123;178124;178125;178126;178127;178128;178129;178130;178131;178132;178133;178134;178135;178136;178137;178138;178139;178140;178141;178142;178143;178144;178145;178146;178147	178141			40	
GTYDILVTK	1	Unmodified	1008.5492	0.54916182	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	51.418	48.672	2	0.00093493	44361	160511_QHF_FH_JSI12i_1	71.349	55.146			0.94998	0.78321	14.2	5	0	Linear	0.94998	0.78289	NaN	1	0	Median	0.67003	0.7768	NaN	1	0	Median	0.88288	0.86925	20.442	2	0	Median	0.97009	0.98958	NaN	1	0	Median	395470000	216520000	178950000	89525000	47338000	42187000	101580000	59791000	41785000	119010000	61821000	57185000	85362000	47565000	37797000	21380	1043	20240	131391;131392;131393;131394;131395	178148;178149;178150;178151;178152	178150			5	
GTYFPPGKEPK	2	Unmodified	1219.6237	0.62372375	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.432	24.406	3	0.049538	20202	160511_QHF_FH_JSI12i_3	31.348	22.938			1.3396	1.3873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3396	1.3873	NaN	1	1	Median	22639000	7886800	14752000	0	0	0	0	0	0	0	0	0	22639000	7886800	14752000	21381	3216	20241	131396	178153	178153			1	
GTYIHALDNGLFTLGAPHK	1	Unmodified	2024.048	0.047959831	2530	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	76.953	76.567	3;4	7.3016E-09	66253	160511_QHF_FH_JSI12i_3	111.33	106.12			0.92633	0.97439	13.48	5	0	Median	NaN	NaN	NaN	0	0	Median	0.8525	0.97439	NaN	1	0	Median	1.2487	1.1437	14.458	2	0	Median	0.9014	0.91719	3.2845	2	0	Median	415960000	205090000	210870000	0	0	0	14363000	8061200	6301500	163490000	81744000	81745000	238110000	115290000	122820000	21382	2530	20242	131397;131398;131399;131400;131401	178154;178155;178156;178157;178158;178159	178158			6	
GTYLASK	1	Unmodified	738.3912	0.39120462	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	10	5.66		1					2					2	1	14.289	9.1633	2	0.012767	8433	160511_QHF_FH_JSI11i_2	72.789	17.348			1.2556	1.2812	23.12	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1083	1.1069	20.677	2	1	Median	0.76204	0.81168	NaN	1	0	Median	205900000	72286000	133620000	0	0	0	0	0	0	200990000	69763000	131230000	4911300	2522500	2388700	21383	3175	20243	131402;131403;131404	178160;178161;178162	178161			3	
GTYLATFHQR	0	Unmodified	1192.5989	0.59890598	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.46			4					2	11	6	5	4	2	35.24	28.173	2;3	5.5472E-144	15786	160513_QHF_FH_JSI10Kac_6	297.11	210.32			0.96327	0.99089	20.511	15	1	Median	1.2816	1.0968	30.003	5	0	Median	0.84694	0.99089	14.927	5	0	Median	1.088	1.018	15.313	3	1	Median	0.91776	0.9704	1.5862	2	0	Median	1844700000	940220000	904490000	580590000	279670000	300920000	846940000	449100000	397840000	275530000	131920000	143610000	141640000	79525000	62120000	21384	1867	20244	131405;131406;131407;131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420;131421	178163;178164;178165;178166;178167;178168;178169;178170;178171;178172;178173;178174;178175;178176;178177;178178;178179;178180;178181;178182;178183;178184;178185	178185			23	
GTYLVHLTCTSSK	1	Unmodified	1465.7235	0.72351415	1243	P24386	CHM	Rab proteins geranylgeranyltransferase component A 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	1	2	3	2	45.081	37.62	2;3	1.2898E-08	20761	160513_QHF_FH_JSI10Kac_6	108.97	101.25			1.2906	1.2111	8.8345	5	2	Median	1.6734	1.4501	NaN	1	1	Median	0.97384	1.1551	NaN	1	0	Median	1.3538	1.2897	NaN	1	1	Median	1.1896	1.2093	0.21	2	0	Median	95702000	38687000	57015000	10552000	3966100	6585500	28441000	13724000	14717000	17285000	5595300	11690000	39424000	15402000	24023000	21385	1243	20245	131422;131423;131424;131425;131426;131427;131428;131429	178186;178187;178188;178189;178190;178191;178192;178193;178194	178192			9	
GTYQGLTATVLK	1	Unmodified	1250.6871	0.68705229	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	5.78		3					3	4		2	2	3	3	63.176	55.342	2	2.7377E-08	30072	160513_QHF_FH_JSI10Kac_4	115	69.669			0.68182	0.59297	39.271	10	9	Median	0.68182	0.57618	6.2808	2	2	Median	0.55854	0.65945	43.91	2	1	Median	0.81661	0.83757	36.272	3	3	Median	0.51863	0.58373	61.39	3	3	Median	1373500000	923490000	450020000	389680000	260700000	128980000	33558000	19945000	13613000	471020000	268120000	202910000	479260000	374740000	104520000	21386	1792	20246	131430;131431;131432;131433;131434;131435;131436;131437;131438;131439	178195;178196;178197;178198;178199;178200;178201;178202;178203;178204;178205	178198			11	
GVAASSAQK	1	Unmodified	817.42938	0.42938104	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	5.0361	4.7359	2	0.00083884	2698	160511_QHF_FH_JSI10i_1	84.498	31.815			1.0148	0.98592	16.658	5	1	Median	1.0148	0.83233	NaN	1	0	Median	0.7928	0.94409	6.1308	2	1	Median	1.2157	1.1867	NaN	1	0	Median	1.1997	1.2171	NaN	1	0	Median	543860000	270550000	273300000	84512000	38591000	45921000	241520000	126970000	114550000	104300000	50900000	53396000	113530000	54092000	59435000	21387	3670	20247	131440;131441;131442;131443;131444	178206;178207;178208	178208			3	
GVAAYMK	1	Unmodified	738.37345	0.37344606	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2.33	0.471		2	1							1		1	1	18.933	18.546	2	0.038396	15327	160511_QHF_FH_JSI11i_2	48.174	31.247			1.3732	1.3236	11.309	3	0	Median	1.8781	1.5875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2363	1.2901	NaN	1	0	Median	1.3732	1.3236	NaN	1	0	Median	103920000	48002000	55914000	22108000	10011000	12097000	0	0	0	37145000	18815000	18329000	44664000	19177000	25487000	21388	1307	20248	131445;131446;131447	178209	178209			1	
GVAFIRFDK	1	Unmodified	1051.5815	0.581465	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	2	2	56.616	51.945	2;3	1.742E-06	43484	160511_QHF_FH_JSI10i_3	105.52	85			0.96028	0.92908	25.204	9	1	Median	0.96028	0.77136	8.3394	3	1	Median	0.95978	1.1276	14.401	2	0	Median	1.4409	1.3861	6.994	2	0	Median	0.85121	0.90459	3.7783	2	0	Median	1127900000	560610000	567240000	401140000	200790000	200360000	335220000	172100000	163120000	254470000	106770000	147690000	137020000	80951000	56070000	21389	2700	20249	131448;131449;131450;131451;131452;131453;131454;131455;131456	178210;178211;178212;178213;178214;178215;178216;178217;178218;178219;178220	178213			11	
GVAFVGGFSYADVLGSAK	1	Unmodified	1743.8832	0.88318591	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.4	2	4	3						2	1	3	3	4	95.802	94.982	2	2.1957E-43	46058	160513_QHF_FH_JSI10Kac_6	217.88	194.97			0.73294	0.78357	7.8028	9	3	Median	0.95542	0.8166	NaN	1	0	Median	0.6738	0.79755	11.842	3	1	Median	0.76726	0.74979	7.7787	3	2	Median	0.7291	0.76015	4.2916	2	0	Median	407300000	233190000	174110000	37762000	20788000	16974000	202300000	115800000	86509000	80891000	44232000	36659000	86340000	52373000	33967000	21390	241	20250	131457;131458;131459;131460;131461;131462;131463;131464;131465;131466;131467	178221;178222;178223;178224;178225;178226;178227;178228;178229;178230;178231;178232	178232			12	
GVAGAHGLLCLLSDHVDK	1	Unmodified	1860.9516	0.9516166	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		73.517	73.517	3;4	1.0892E-07	65561	160511_QHF_FH_JSI11i_3	111.43	106			0.74871	0.6839	6.8502	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74871	0.6839	6.8502	2	0	Median	NaN	NaN	NaN	0	0	Median	104920000	59645000	45273000	0	0	0	0	0	0	104920000	59645000	45273000	0	0	0	21391	5249	20251	131468;131469	178233;178234;178235	178234			2	
GVAGNPMVK	1	Unmodified	871.45857	0.45857268	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	19.67	18.996	2	0.0024838	15568	160511_QHF_FH_JSI12i_2	73.975	62.606			0.92516	0.90726	21.748	6	2	Median	1.1233	0.95316	8.8218	2	0	Median	0.79484	0.91916	NaN	1	0	Median	0.69695	0.68807	NaN	1	1	Median	0.89925	0.96342	37.458	2	1	Median	599090000	301830000	297260000	166540000	68649000	97891000	164780000	94516000	70268000	93514000	44103000	49411000	174250000	94565000	79690000	21392	4171	20252	131470;131471;131472;131473;131474;131475	178236;178237;178238;178239	178237			3	
GVAIGQTSLTASVTNK	1	Unmodified	1545.8362	0.83623572	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.8	0.748	2	2	1								1	2	2	53.2	52.806	2	4.1118E-07	47505	160511_QHF_FH_JSI10i_1	128.54	112.97			0.90896	1.3433	30.759	4	3	Linear	NaN	NaN	NaN	0	0	Median	1.1027	1.2453	NaN	1	1	Median	0.95503	0.92233	37.659	2	2	Median	0.68859	0.73254	NaN	1	0	Median	87784000	40503000	47281000	0	0	0	32285000	12327000	19959000	42811000	21101000	21710000	12688000	7075500	5612100	21393	3734	20253	131476;131477;131478;131479;131480	178240;178241;178242;178243;178244	178242			5	
GVAINFVK	1	Unmodified	846.49634	0.49633839	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.63	4	4	3				2	5	3	4	6	6	5	53.814	48.583	2	6.1E-05	26778	160513_QHF_FH_JSI11Kac_5	128.38	97.093			0.94955	1.0666	14.9	19	2	Median	1.1443	0.98346	23.721	3	1	Plateau	0.89803	1.0904	8.9788	6	0	Median	1.0911	1.0666	21.872	5	1	Median	0.94374	1.0396	9.563	5	0	Median	3216900000	1542800000	1674200000	292650000	120260000	172390000	665410000	351510000	313890000	1088700000	516470000	572200000	1170200000	554510000	615700000	21394	1481	20254	131481;131482;131483;131484;131485;131486;131487;131488;131489;131490;131491;131492;131493;131494;131495;131496;131497;131498;131499;131500;131501	178245;178246;178247;178248;178249;178250;178251;178252;178253;178254;178255;178256;178257;178258;178259;178260;178261;178262;178263;178264;178265;178266;178267;178268;178269;178270;178271	178263			27	
GVAINFVTEEDK	1	Unmodified	1320.6561	0.65614609	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							3	3	1	3	58.395	57.415	2	1.4146E-07	49292	160511_QHF_FH_JSI12i_3	113.93	96.49			0.46552	0.52857	51.969	8	8	Median	0.38761	0.32924	83.922	2	2	Median	0.49377	0.57896	49.734	3	3	Median	0.29919	0.30444	NaN	1	1	Median	0.5116	0.54558	17.357	2	2	Median	1053600000	814710000	238880000	200330000	165240000	35099000	293640000	209220000	84420000	291810000	242300000	49511000	267810000	197960000	69848000	21395	2519	20255	131502;131503;131504;131505;131506;131507;131508;131509;131510;131511	178272;178273;178274;178275;178276;178277;178278;178279;178280;178281	178281			10	
GVAINFVTEEDKR	1	Unmodified	1476.7573	0.75725712	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	48.099	47.978	3	0.0034498	42369	160511_QHF_FH_JSI11i_3	51.643	41.009			1.1501	1.1213	30.663	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96607	0.90273	NaN	1	1	Median	1.3693	1.3928	NaN	1	0	Median	142490000	69870000	72625000	0	0	0	0	0	0	79197000	36766000	42431000	63297000	33104000	30193000	21396	2519	20256	131512;131513	178282;178283	178282			1	
GVAINMVTEEDK	1	Unmodified	1304.6282	0.62821678	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	3.87	4	6	4			1	1			3	5	4	4	48.351	46.282	2	9.9805E-65	42029	160511_QHF_FH_JSI11i_1	229.17	171.31			0.94015	0.97698	18.012	16	8	Median	0.93448	0.77248	4.8348	3	0	Plateau	0.93481	1.1297	10.342	5	2	Median	0.97136	0.84038	16.334	4	3	Linear	0.7921	0.85706	11.06	4	3	Median	4972800000	2467300000	2505600000	743060000	368590000	374460000	1366400000	641550000	724890000	1493800000	736440000	757380000	1369500000	720710000	648820000	21397	1917	20257	131514;131515;131516;131517;131518;131519;131520;131521;131522;131523;131524;131525;131526;131527;131528;131529	178284;178285;178286;178287;178288;178289;178290;178291;178292;178293;178294;178295;178296;178297;178298;178299;178300;178301;178302;178303;178304;178305;178306;178307;178308;178309;178310;178311;178312	178288			29	
GVAINMVTEEDK	1	Oxidation (M)	1320.6231	0.6231314	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.61	5.37	5				3	8	2			3	7	3	5	36.994	30.186	2	3.4938E-12	17999	160513_QHF_FH_JSI12Kac_3	123.63	104.85			1.1024	1.1898	36.153	15	8	Median	0.90757	0.73139	7.2611	2	1	Median	1.2657	1.5131	29.798	7	3	Median	1.0435	1.0141	15.311	2	1	Median	1.0749	1.1451	26.772	4	3	Median	334420000	163780000	170640000	68959000	36245000	32714000	169530000	77032000	92495000	9888600	5210000	4678500	86046000	45293000	40753000	21398	1917	20257	131530;131531;131532;131533;131534;131535;131536;131537;131538;131539;131540;131541;131542;131543;131544;131545;131546;131547	178313;178314;178315;178316;178317;178318;178319;178320;178321;178322;178323;178324;178325;178326;178327;178328;178329;178330;178331;178332;178333;178334	178329		1589	22	
GVAINMVTEEDKR	1	Oxidation (M)	1476.7242	0.72424243	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	5.77			7				3	7		2	3	5	7	31.53	25.575	2;3	4.7392E-09	20915	160511_QHF_FH_JSI12i_3	109.42	82.321			0.90507	0.91339	17.602	16	3	Median	1.1255	0.95206	0.3519	2	0	Median	0.72368	0.87608	12.141	3	0	Plateau	0.90693	0.88534	26.52	5	2	Median	0.90507	0.96484	12.285	6	1	Median	580980000	284670000	296310000	15563000	7313600	8249600	20728000	12218000	8509600	318620000	156280000	162330000	226070000	108860000	117220000	21399	1917	20258	131548;131549;131550;131551;131552;131553;131554;131555;131556;131557;131558;131559;131560;131561;131562;131563;131564	178335;178336;178337;178338;178339;178340;178341;178342;178343;178344;178345;178346;178347;178348;178349;178350;178351;178352;178353	178353		1589	19	
GVAINMVTEEDKR	1	Unmodified	1460.7293	0.72932781	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.03	6.32		8	9				1	8	4	7	8	8	7	43.073	38.24	2;3	2.2811E-66	33538	160511_QHF_FH_JSI11i_3	271.65	251.36			0.92818	0.94561	17.585	28	2	Median	1.5198	1.2856	14.859	6	1	Median	0.7379	0.87658	19.561	8	1	Median	0.92554	0.92394	3.5322	7	0	Median	0.91427	1.02	13.782	7	0	Median	11585000000	6166400000	5418500000	1322700000	495000000	827670000	2425500000	1350800000	1074700000	4762700000	2580400000	2182300000	3074100000	1740200000	1333800000	21400	1917	20258	131565;131566;131567;131568;131569;131570;131571;131572;131573;131574;131575;131576;131577;131578;131579;131580;131581;131582;131583;131584;131585;131586;131587;131588;131589;131590;131591;131592;131593;131594	178354;178355;178356;178357;178358;178359;178360;178361;178362;178363;178364;178365;178366;178367;178368;178369;178370;178371;178372;178373;178374;178375;178376;178377;178378;178379;178380;178381;178382;178383;178384;178385;178386;178387;178388;178389;178390;178391;178392;178393;178394;178395;178396;178397;178398;178399;178400;178401;178402;178403;178404;178405;178406	178360			53	
GVALSNVIHK	1	Unmodified	1036.6029	0.60292873	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.54	1	7	9					2	9	8	7	8	5	40.943	37.063	2;3	2.3345E-56	31235	160511_QHF_FH_JSI12i_3	237.61	180.43			0.96058	0.98916	50.915	25	2	Median	0.96058	0.82032	35.177	7	0	Median	0.83798	1.0045	13.736	6	0	Median	1.1955	1.1663	91.185	7	1	Median	1.1094	1.2124	21.956	5	1	Median	15518000000	6881300000	8637200000	3492600000	1264600000	2228000000	3276900000	1668300000	1608700000	3698100000	1785400000	1912700000	5050800000	2163000000	2887800000	21401	1464	20259	131595;131596;131597;131598;131599;131600;131601;131602;131603;131604;131605;131606;131607;131608;131609;131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622	178407;178408;178409;178410;178411;178412;178413;178414;178415;178416;178417;178418;178419;178420;178421;178422;178423;178424;178425;178426;178427;178428;178429;178430;178431;178432;178433;178434;178435;178436;178437;178438;178439;178440;178441;178442;178443;178444;178445;178446;178447;178448;178449;178450;178451;178452;178453;178454;178455;178456;178457;178458	178449			52	
GVAMNPVEHPFGGGNHQHIGK	1	Oxidation (M)	2198.044	0.04395386	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				41.767	40.231	4	0.0094304	32836	160511_QHF_FH_JSI9i_3	30.767	26.317			1.4233	1.178	NaN	1	0	Median	1.4233	1.178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75332000	39103000	36228000	75332000	39103000	36228000	0	0	0	0	0	0	0	0	0	21402	2039	20260	131623	178459	178459		1701	1	
GVAPLWMR	0	Oxidation (M)	944.49021	0.49020716	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	3	1	44.503	43.656	2	0.0010394	35726	160511_QHF_FH_JSI9i_3	99.919	60.377			0.9887	1.0048	6.1833	4	0	Median	1.2941	1.0439	NaN	1	0	Median	0.85648	1.0013	NaN	1	0	Median	1.0755	1.0084	NaN	1	0	Median	0.90895	0.90424	NaN	1	0	Median	825720000	411340000	414380000	273420000	123070000	150350000	292050000	147530000	144520000	105130000	51004000	54124000	155120000	89736000	65387000	21403	2146	20261	131624;131625;131626;131627;131628;131629;131630	178460;178461;178462;178463;178464;178465;178466;178467;178468;178469;178470;178471;178472;178473;178474;178475	178470		1789	16	
GVAPLWMR	0	Unmodified	928.49529	0.49529253	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	5	4	3	59.292	55.894	2	5.07E-30	49277	160511_QHF_FH_JSI11i_3	201.2	175.09			0.88391	0.94039	14.879	13	3	Median	1.2184	0.98966	6.2499	3	1	Plateau	0.78778	0.93582	26.712	4	2	Median	1.0259	0.96652	11.62	3	0	Median	0.81856	0.85793	5.9361	3	0	Plateau	9447700000	4875800000	4571900000	2271200000	1008000000	1263200000	2423100000	1319800000	1103300000	2458900000	1268800000	1190100000	2294500000	1279200000	1015300000	21404	2146	20261	131631;131632;131633;131634;131635;131636;131637;131638;131639;131640;131641;131642;131643;131644;131645	178476;178477;178478;178479;178480;178481;178482;178483;178484;178485;178486;178487;178488;178489;178490;178491;178492;178493;178494;178495;178496;178497;178498;178499;178500;178501;178502;178503;178504;178505;178506;178507;178508	178477			33	
GVATNWLR	0	Unmodified	915.49265	0.49265	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	43.683	43.072	2	5.3388E-05	37808	160511_QHF_FH_JSI11i_3	135.35	86.847			1.7605	0.91232	30.732	3	0	Plateau	1.9283	1.5483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.981	0.90624	NaN	1	0	Median	0.88918	0.91232	NaN	1	0	Median	1162900000	494370000	668570000	637550000	219990000	417560000	0	0	0	338980000	180080000	158890000	186410000	94297000	92117000	21405	1100	20262	131646;131647;131648;131649	178509;178510;178511;178512	178509			4	
GVAVDYLPER	0	Unmodified	1117.5768	0.57677356	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	3	3	2	51.647	47.531	2	5.2838E-06	41094	160511_QHF_FH_JSI11i_2	108.98	98.267			0.92285	0.91555	7.7755	9	1	Median	1.0757	0.91555	NaN	1	0	Median	0.72197	0.83579	3.9712	3	1	Median	0.94052	0.92814	3.3721	3	0	Plateau	0.90734	0.99207	5.6588	2	0	Median	796820000	422230000	374590000	85012000	42593000	42419000	263860000	146530000	117330000	348290000	179390000	168890000	99663000	53712000	45951000	21406	1035	20263	131650;131651;131652;131653;131654;131655;131656;131657;131658	178513;178514;178515;178516;178517;178518;178519;178520;178521	178519			9	
GVAYDVPNPVFLEQK	1	Unmodified	1674.8617	0.86172219	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	79.394	78.818	2;3	0.00037189	70115	160511_QHF_FH_JSI9i_1	95.094	80.675			0.47513	0.46457	46.278	3	2	Median	0.39802	0.32066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47513	0.46457	NaN	1	1	Median	0.77145	0.80448	NaN	1	0	Median	116610000	77431000	39178000	40654000	26752000	13902000	0	0	0	55908000	39314000	16593000	20047000	11365000	8682100	21407	2771	20264	131659;131660;131661	178522;178523;178524;178525	178525			4	
GVAYTLLTPK	1	Unmodified	1061.6121	0.61209643	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		2	1	3	3	55.381	54.649	2	1.2406E-06	46878	160511_QHF_FH_JSI12i_2	128	111.52			0.97103	0.98921	13.1	8	7	Median	0.97103	0.8136	0.62301	2	1	Median	0.79989	0.97603	NaN	1	1	Median	0.98911	0.96382	5.5747	2	2	Median	1.0799	1.0774	6.0064	3	3	Median	666850000	361620000	305230000	114170000	64337000	49833000	84002000	52244000	31758000	209290000	114640000	94650000	259390000	130410000	128990000	21408	3377	20265	131662;131663;131664;131665;131666;131667;131668;131669;131670	178526;178527;178528;178529;178530;178531;178532;178533;178534	178527			8	
GVCDQSFGIHVAELANFPK	1	Unmodified	2088.0099	0.0098597649	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	85.888	85.812	3	3.3591E-06	74452	160511_QHF_FH_JSI12i_3	88.565	80.175			1.2016	1.182	10.169	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1845	1.1	NaN	1	0	Median	1.219	1.2701	NaN	1	0	Median	80714000	43315000	37399000	0	0	0	0	0	0	31534000	18935000	12599000	49179000	24379000	24800000	21409	1557	20266	131671;131672	178535;178536;178537	178536			3	
GVCHIPMAEPFCPK	1	Unmodified	1641.7466	0.74657455	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	55.085	54.964	3	2.139E-05	47264	160511_QHF_FH_JSI12i_3	101.39	96.668			1.2904	1.255	29.127	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0929	1.0214	NaN	1	0	Median	1.5235	1.542	NaN	1	0	Median	197000000	88010000	108990000	0	0	0	0	0	0	77244000	38155000	39088000	119760000	49855000	69903000	21410	2354	20267	131673;131674	178538	178538			1	
GVDDLDFFIGDEAIEKPTYATK	2	Unmodified	2443.1795	0.17948709	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	94.043	94.037	3	0.013554	81470	160511_QHF_FH_JSI12i_3	34.405	27.559			0.74727	0.80808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74727	0.80808	NaN	1	1	Median	11286000	7758600	3527500	0	0	0	0	0	0	0	0	0	11286000	7758600	3527500	21411	1939	20268	131675	178539	178539			1	
GVDEATIIDILTK	1	Unmodified	1386.7606	0.76061116	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	4.2	8	8	2					1	1	5	6	5	4	100.44	99.533	2;3	1.6838E-116	91887	160511_QHF_FH_JSI11i_1	272.03	247.25			0.95717	0.95238	21.546	20	1	Median	1.0212	0.86013	31.431	5	0	Median	0.77416	0.90492	23.266	6	1	Median	0.95961	0.95762	13.79	5	0	Median	1.0117	1.077	6.4517	4	0	Linear	8483300000	4344700000	4138600000	1733100000	865540000	867580000	2477900000	1393300000	1084600000	2146300000	1009600000	1136700000	2126000000	1076300000	1049700000	21412	805	20269	131676;131677;131678;131679;131680;131681;131682;131683;131684;131685;131686;131687;131688;131689;131690;131691;131692;131693;131694;131695	178540;178541;178542;178543;178544;178545;178546;178547;178548;178549;178550;178551;178552;178553;178554;178555;178556;178557;178558;178559;178560;178561;178562;178563;178564;178565;178566;178567;178568;178569;178570;178571;178572;178573;178574;178575;178576	178540			37	
GVDESGASR	0	Unmodified	876.39372	0.39372381	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.3615	5.0711	2	0.00093332	3079	160511_QHF_FH_JSI10i_1	71.379	46.381			0.84404	0.92572	0.41075	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77695	0.92304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91692	0.92841	NaN	1	0	Median	355810000	193600000	162210000	0	0	0	177130000	103250000	73877000	0	0	0	178690000	90353000	88334000	21413	2291	20270	131696;131697	178577	178577			1	
GVDEVTIVNILTNR	0	Unmodified	1541.8413	0.8413211	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.49	9	10	10					8	8	10	13	10	12	93.633	90.368	2;3	1.9149E-226	84094	160511_QHF_FH_JSI9i_2	346.06	318.32			1.0027	0.98582	11.974	42	8	Median	1.1452	0.94934	14.017	9	2	Median	0.78323	0.91971	6.3538	11	2	Median	1.0881	1.073	7.4224	10	1	Median	0.97898	1.0428	10.597	12	3	Median	23715000000	12159000000	11556000000	4011800000	1953800000	2058000000	6328100000	3584700000	2743500000	6224400000	3099600000	3124900000	7151000000	3521100000	3629900000	21414	870	20271	131698;131699;131700;131701;131702;131703;131704;131705;131706;131707;131708;131709;131710;131711;131712;131713;131714;131715;131716;131717;131718;131719;131720;131721;131722;131723;131724;131725;131726;131727;131728;131729;131730;131731;131732;131733;131734;131735;131736;131737;131738;131739;131740;131741;131742	178578;178579;178580;178581;178582;178583;178584;178585;178586;178587;178588;178589;178590;178591;178592;178593;178594;178595;178596;178597;178598;178599;178600;178601;178602;178603;178604;178605;178606;178607;178608;178609;178610;178611;178612;178613;178614;178615;178616;178617;178618;178619;178620;178621;178622;178623;178624;178625;178626;178627;178628;178629;178630;178631;178632;178633;178634;178635;178636;178637;178638;178639;178640;178641;178642;178643;178644;178645;178646;178647;178648;178649;178650;178651;178652;178653;178654;178655;178656;178657;178658;178659;178660;178661;178662;178663;178664;178665;178666;178667;178668;178669;178670	178631			92	
GVDGSFLARPSK	1	Unmodified	1232.6513	0.65133548	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	34.255	33.421	2;3	1.4722E-05	27869	160511_QHF_FH_JSI10i_3	105.13	82.216			1.0887	1.0131	6.9809	7	0	Median	1.3129	1.0759	0.59621	2	0	Median	0.81519	0.94166	2.2838	2	0	Median	1.0594	0.98133	4.5088	2	0	Median	1.0982	1.0994	NaN	1	0	Median	1238700000	602240000	636450000	349810000	159090000	190720000	369310000	208920000	160380000	443820000	202040000	241770000	75758000	32189000	43569000	21415	2239	20272	131743;131744;131745;131746;131747;131748;131749	178671;178672;178673;178674;178675;178676;178677;178678	178675			8	
GVDILLTSPWPK	1	Unmodified	1324.7391	0.73908786	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.321	89.45	2	0.00095948	77175	160511_QHF_FH_JSI12i_2	77.379	65.531			0.32085	0.34676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32085	0.34676	NaN	1	1	Median	8035700	5901300	2134400	0	0	0	0	0	0	0	0	0	8035700	5901300	2134400	21416	3032	20273	131750	178679	178679			1	
GVDIVMDPLGGSDTAK	1	Unmodified	1573.7658	0.76577289	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.543	72.027	2	3.1812E-07	65577	160511_QHF_FH_JSI12i_1	146.79	126.58			1.3192	1.3841	3.1841	4	4	Median	1.6695	1.385	NaN	1	1	Median	1.1869	1.3832	NaN	1	1	Median	1.4179	1.3916	NaN	1	1	Median	1.2273	1.3013	NaN	1	1	Median	818960000	373910000	445050000	114760000	49187000	65577000	243330000	119710000	123620000	252760000	103010000	149750000	208110000	102000000	106110000	21417	4279	20274	131751;131752;131753;131754	178680;178681;178682;178683	178681			4	
GVDIVMDPLGGSDTAK	1	Oxidation (M)	1589.7607	0.76068752	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	1	0			By MS/MS	By MS/MS	6.5	5.5	1				1							1	1	64.589	59.655	2	4.8015E-05	53946	160511_QHF_FH_JSI11i_1	85.554	67.286			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21418	4279	20274	131755;131756	178684;178685	178684		2429	2	
GVDLDQLLDMSYEQLMQLYSAR	0	Unmodified	2587.2298	0.22982488	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.96	94.093	2;3	2.1533E-168	56171	160513_QHF_FH_JSI10Kac_6	359.11	334.55			0.99288	1.1851	4.0041	3	0	Median	1.3966	1.2103	NaN	1	0	Median	0.96452	1.1522	3.9877	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1077100000	537380000	539750000	357440000	163900000	193540000	719690000	373480000	346210000	0	0	0	0	0	0	21419	2024	20275	131757;131758;131759	178686;178687;178688;178689	178689			4	
GVDLDQLLDMSYEQLMQLYSAR	0	Oxidation (M)	2603.2247	0.2247395	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	100.33	90.887	3	2.2032E-13	50050	160513_QHF_FH_JSI12Kac_6	109.75	103.59			1.0194	1.0944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0194	1.0944	NaN	1	0	Median	154270000	77191000	77075000	0	0	0	0	0	0	0	0	0	154270000	77191000	77075000	21420	2024	20275	131760	178690	178690		1685	1	
GVDLHEQSQQNK	1	Unmodified	1381.6586	0.65860571	1931	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.789	10.099	2	0.00031196	7627	160511_QHF_FH_JSI12i_2	90.685	56.819			0.35602	0.39948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35602	0.39948	NaN	1	1	Median	30200000	18897000	11303000	0	0	0	0	0	0	0	0	0	30200000	18897000	11303000	21421	1931	20276	131761	178691	178691			1	
GVDLQENNPASR	0	Unmodified	1298.6215	0.62149192	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	27.855	24.592	2	4.2768E-54	21721	160511_QHF_FH_JSI11i_1	224.58	210.08			0.9897	0.95359	14.539	6	0	Median	1.0379	0.83886	NaN	1	0	Median	0.80634	0.95359	1.2953	2	0	Median	0.99724	0.99299	9.2112	2	0	Median	1.2482	1.2822	NaN	1	0	Median	756750000	392430000	364310000	180270000	87138000	93130000	179470000	100900000	78564000	208700000	114900000	93800000	188310000	89493000	98819000	21422	1727	20277	131762;131763;131764;131765;131766;131767	178692;178693;178694;178695;178696;178697;178698;178699;178700;178701;178702	178693			11	
GVDLSGNDFK	1	Unmodified	1050.4982	0.49818889	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	40.895	39.978	2	5.2951E-11	35331	160511_QHF_FH_JSI9i_1	147.2	131.76			1.0954	1.0257	9.0327	2	0	Median	1.1712	0.96223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0246	1.0933	NaN	1	0	Median	190570000	91401000	99165000	84652000	32761000	51892000	0	0	0	0	0	0	105910000	58641000	47274000	21423	2344	20278	131768;131769;131770;131771;131772	178703;178704;178705;178706;178707;178708	178706			6	
GVDLVLNSLAEEK	1	Unmodified	1385.7402	0.74021007	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.86	4	5	5				1	2		3	4	6	4	75.88	73.82	2;3	9.0913E-82	66184	160511_QHF_FH_JSI10i_2	240.21	181.54			0.95461	0.9135	18.338	15	4	Median	1.1331	0.94236	3.2495	3	0	Median	0.69587	0.89151	20.105	4	1	Linear	0.98238	0.93893	19.764	4	2	Median	0.96442	1.0155	16.075	4	1	Median	3224600000	1791100000	1433500000	600200000	305940000	294260000	882730000	517010000	365720000	1019300000	578430000	440900000	722350000	389760000	332590000	21424	1650	20279	131773;131774;131775;131776;131777;131778;131779;131780;131781;131782;131783;131784;131785;131786;131787;131788;131789	178709;178710;178711;178712;178713;178714;178715;178716;178717;178718;178719;178720;178721;178722;178723;178724;178725;178726;178727;178728;178729;178730;178731;178732;178733;178734;178735;178736;178737;178738	178737			30	
GVDNTFADELVELSTALEHQEYITFLEDLK	1	Unmodified	3438.6719	0.67186232	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			10.1	6.77		2	1						4	4	3			102.58	98.282	3;4	0	53484	160513_QHF_FH_JSI9Kac_6	392.32	373			0.89946	0.94208	17.895	6	2	Median	1.0342	0.89896	20.7	4	2	Median	0.80425	0.95622	13.626	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1397900000	724570000	673360000	521960000	247250000	274700000	875980000	477320000	398660000	0	0	0	0	0	0	21425	2251	20280	131790;131791;131792;131793;131794;131795;131796	178739;178740;178741;178742;178743;178744;178745;178746;178747;178748	178743			10	
GVDPKFLR	1	Acetyl (K)	972.53927	0.53926584	1610	P47914	RPL29	60S ribosomal protein L29	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		58.311	47.476	2	0.032811	27203	160513_QHF_FH_JSI11Kac_4	55.531	38.976			0.28245	0.2802	94.731	3	0	Median	NaN	NaN	NaN	0	0	Median	1.12	1.3267	NaN	1	0	Median	0.26039	0.25865	11.316	2	0	Median	NaN	NaN	NaN	0	0	Median	54645000	40553000	14092000	0	0	0	3601900	1629200	1972700	51043000	38924000	12119000	0	0	0	21426	1610	20281	131797;131798;131799	178749;178750	178749			2	
GVDPNSR	0	Unmodified	743.35622	0.3562161	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0331	4.7264	2	0.005502	2715	160511_QHF_FH_JSI12i_1	82.305	31.998			1.1161	1.0728	0.68301	3	1	Median	1.2812	1.071	NaN	1	0	Median	0.90898	1.0846	NaN	1	0	Median	1.1161	1.0728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1652100000	781100000	871000000	337860000	141450000	196410000	714120000	362250000	351870000	600120000	277400000	322720000	0	0	0	21427	5362	20282	131800;131801;131802;131803	178751;178752;178753;178754;178755	178752			5	
GVEAIPEGSHIK	1	Unmodified	1235.651	0.65100113	3496	Q8N108	MIER1	Mesoderm induction early response protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	28.49	27.582	2	0.00063391	23095	160511_QHF_FH_JSI11i_2	81.865	64.839			0.82951	0.88584	22.635	4	3	Median	0.95669	0.83035	NaN	1	1	Median	0.78584	0.94504	NaN	1	1	Median	0.61816	0.59093	NaN	1	1	Median	0.8756	0.96383	NaN	1	0	Median	62738000	36700000	26038000	14827000	8707500	6119200	15006000	9076900	5928700	17070000	9842500	7227200	15836000	9072700	6763000	21428	3496	20283	131804;131805;131806;131807	178756;178757;178758;178759	178758			4	
GVEAVAIHGGK	1	Unmodified	1036.5665	0.56654322	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		18.431	18.139	2	0.00014395	14756	160511_QHF_FH_JSI11i_2	94.692	64.437			1.1627	1.1743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1627	1.1743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27287000	13564000	13723000	0	0	0	0	0	0	27287000	13564000	13723000	0	0	0	21429	5347	20284	131808	178760;178761	178760			2	
GVEAVGSYAENQR	0	Unmodified	1378.6477	0.64770667	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.959	27.372	2	3.0399E-06	23760	160511_QHF_FH_JSI9i_1	126.71	108.84			0.61006	0.6596	6.785	4	0	Linear	0.74419	0.59937	NaN	1	0	Median	0.49965	0.59537	NaN	1	0	Median	0.6885	0.6737	NaN	1	0	Median	0.54056	0.57723	NaN	1	0	Median	244750000	126100000	118650000	60657000	25639000	35018000	60619000	37859000	22760000	83907000	40536000	43371000	39566000	22069000	17498000	21430	2338	20285	131809;131810;131811;131812	178762;178763;178764;178765;178766	178765			5	
GVEGLIDIENPNR	0	Unmodified	1424.726	0.72595699	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.36	6	4	2				1			3	5	3	2	64.865	63.28	2;3	6.3608E-82	57664	160511_QHF_FH_JSI11i_1	244.24	196.63			0.94864	0.94257	14.386	12	0	Median	1.2461	1.0686	14.936	3	0	Median	0.6955	0.9374	22.872	4	0	Linear	0.98198	0.94346	9.0872	3	0	Median	0.85901	0.93443	1.0931	2	0	Median	1925700000	1006900000	918840000	305120000	143140000	161980000	532820000	312700000	220120000	578820000	283730000	295080000	508970000	267310000	241660000	21431	2415	20286	131813;131814;131815;131816;131817;131818;131819;131820;131821;131822;131823;131824;131825	178767;178768;178769;178770;178771;178772;178773;178774;178775;178776;178777;178778;178779;178780;178781;178782;178783;178784;178785;178786;178787;178788	178768			20	
GVEGSDYINASFLDGYR	0	Unmodified	1861.8483	0.84825697	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	80.98	80.546	2	1.0701E-16	73347	160511_QHF_FH_JSI11i_1	124.86	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21432	971	20287	131826;131827	178789;178790	178789			2	
GVEGYGNDQTYFEEIK	1	Unmodified	1847.8214	0.82137352	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	62.646	62.156	2	8.6457E-36	56718	160511_QHF_FH_JSI12i_1	168.31	136.3			1.545	1.4744	11.221	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.5962	1.812	NaN	1	1	Median	1.545	1.4732	NaN	1	1	Median	1.4171	1.5156	NaN	1	1	Median	96933000	34161000	62772000	0	0	0	13637000	2853700	10783000	38961000	11389000	27572000	44335000	19918000	24416000	21433	3212	20288	131828;131829;131830;131831	178791;178792;178793;178794;178795	178793			5	
GVEIEEK	1	Unmodified	802.40725	0.40724861	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		20.63	13.167	2	0.05725	8936	160513_QHF_FH_JSI11Kac_3	48.787	11.812			1.0763	1.0482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0763	1.0482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2980000	1446600	1533400	0	0	0	0	0	0	2980000	1446600	1533400	0	0	0	21434	4821	20289	131832	178796	178796			1	
GVEITGFPEAQALGLEVFHAGTALK	1	Unmodified	2554.3431	0.3431388	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	1	2	99.432	96.283	3	2.4861E-63	89989	160511_QHF_FH_JSI10i_2	217.71	203.14			0.98816	1.0411	9.6749	6	1	Linear	1.0853	0.93119	9.0998	2	0	Median	0.77724	0.94336	NaN	1	0	Median	1.0289	1.04	NaN	1	0	Median	0.87053	0.94115	17.146	2	1	Median	6137000000	3095100000	3041900000	897730000	394540000	503190000	1115500000	607590000	507910000	1857900000	944310000	913620000	2265800000	1148600000	1117200000	21435	1205	20290	131833;131834;131835;131836;131837;131838	178797;178798;178799;178800;178801;178802;178803;178804;178805	178803			9	
GVENPAVQESNQK	1	Unmodified	1398.6739	0.67392142	4100	Q96GX5	MASTL	Serine/threonine-protein kinase greatwall	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.579	16.121	2	0.0005249	13805	160511_QHF_FH_JSI12i_1	89.403	64.018			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12525000	12525000	0	0	0	0	0	0	0	0	0	0	12525000	12525000	0	21436	4100	20291	131839	178806	178806			1	
GVEPSPSPIKPGDIK	2	Acetyl (K)	1561.8352	0.83517309	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						3						1	2	63.125	53.777	2	0.0012309	28029	160513_QHF_FH_JSI12Kac_3	79.741	65.05			0.52896	0.50671	31.505	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52328	0.49688	NaN	1	0	Median	0.81562	0.85121	7.2987	2	0	Median	4808400	2868300	1940100	0	0	0	0	0	0	2193200	1295800	897430	2615200	1572500	1042700	21437	3902	20292	131840;131841;131842	178807;178808;178809;178810	178809	2993		4	
GVETIANDVVSLATK	1	Unmodified	1515.8144	0.81443765	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.6	8	8	1							4	5	4	4	89.753	89.222	2;3	8.6313E-30	78453	160511_QHF_FH_JSI9i_2	177.81	149.09			0.89507	0.9051	38.521	16	5	Median	1.116	0.95893	54.158	4	2	Median	0.78711	0.91414	43.255	4	2	Median	0.89507	0.90204	33.837	4	0	Median	0.89138	0.9736	32.808	4	1	Median	683830000	349190000	334640000	98360000	50446000	47913000	196460000	108390000	88071000	226910000	103930000	122990000	162100000	86423000	75675000	21438	970	20293	131843;131844;131845;131846;131847;131848;131849;131850;131851;131852;131853;131854;131855;131856;131857;131858;131859	178811;178812;178813;178814;178815;178816;178817;178818;178819;178820;178821;178822;178823;178824;178825;178826;178827;178828;178829;178830;178831;178832	178827			22	
GVEVDPSLIK	1	Unmodified	1055.5863	0.58627561	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	56.293	53.222	2	1.3321E-05	47901	160511_QHF_FH_JSI11i_1	113.18	90.684			0.90522	1.0374	37.103	7	6	Median	1.2525	1.0445	NaN	1	0	Median	0.89453	1.0374	NaN	1	1	Median	1.0258	1.0054	19.264	2	2	Median	0.38135	0.40807	49.592	3	3	Plateau	717440000	439430000	278010000	97174000	45694000	51480000	121240000	65708000	55536000	220680000	105880000	114800000	278340000	222150000	56188000	21439	409	20294	131860;131861;131862;131863;131864;131865;131866	178833;178834;178835;178836;178837;178838;178839;178840	178834			8	
GVEVTVGHEQEEGGK	1	Unmodified	1553.7322	0.73216458	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.43	0.495	4	3								2	3	1	1	19.762	19.145	2;3	6.3207E-05	16669	160511_QHF_FH_JSI12i_1	72.523	59.756			0.92286	0.92422	35.174	5	0	Median	1.4329	1.2142	61.977	2	0	Median	0.79577	0.92422	NaN	1	0	Median	0.92182	0.91231	NaN	1	0	Median	1.2564	1.2922	NaN	1	0	Median	237180000	129430000	107760000	71852000	30402000	41450000	69812000	47366000	22447000	47852000	25899000	21954000	47668000	25762000	21907000	21440	3	20295	131867;131868;131869;131870;131871;131872;131873	178841;178842;178843;178844;178845	178841			4	
GVEVTVGHEQEEGGKWPYAGTAEAIK	2	Unmodified	2741.3297	0.32967358	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	57.625	57.346	3;4	8.897E-32	50755	160511_QHF_FH_JSI11i_3	149.73	143			0.92226	0.93412	11.475	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82429	0.98622	NaN	1	0	Median	1.0147	0.96829	13.538	2	0	Median	0.85338	0.8576	12.086	2	0	Median	460890000	240730000	220170000	0	0	0	49495000	29864000	19631000	270770000	130320000	140450000	140630000	80542000	60086000	21441	3	20296	131874;131875;131876;131877;131878;131879	178846;178847;178848;178849;178850;178851;178852;178853;178854;178855;178856	178847			11	
GVEWAAFGR	0	Unmodified	991.48756	0.48756462	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	55.719	55.595	2	2.6258E-06	47767	160511_QHF_FH_JSI12i_3	125.81	100.36			1.2532	1.2273	12.961	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2034	1.1198	NaN	1	0	Median	1.3051	1.3451	NaN	1	0	Median	166900000	78001000	88894000	0	0	0	0	0	0	67587000	32360000	35226000	99309000	45641000	53668000	21442	3050	20297	131880;131881	178857;178858	178858			1	
GVFAGNSR	0	Unmodified	806.4035	0.40350064	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			10.729	10.057	2	0.011461	7726	160511_QHF_FH_JSI10i_3	54.157	40.095			1.102	1.0715	1.3494	2	0	Median	1.2972	1.0613	NaN	1	0	Median	0.93617	1.0818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113690000	53231000	60456000	60887000	24278000	36609000	52801000	28953000	23847000	0	0	0	0	0	0	21443	1701	20298	131882;131883	178859;178860;178861;178862	178860			4	
GVFDCRK	1	Unmodified	880.42252	0.42252152	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		11.243	10.776	2;3	0.0014662	8326	160511_QHF_FH_JSI10i_3	128.38	99.044			1.2158	1.0328	12.661	6	0	Median	1.2684	1.0328	5.9006	2	0	Median	0.76442	0.90055	6.6844	2	0	Median	1.2415	1.1754	3.5153	2	0	Median	NaN	NaN	NaN	0	0	Median	731810000	310670000	421140000	205080000	69618000	135460000	237990000	89674000	148320000	288740000	151380000	137360000	0	0	0	21444	2176	20299	131884;131885;131886;131887;131888;131889	178863;178864;178865;178866;178867;178868;178869;178870;178871	178866			9	
GVFEAIVDQSPFVPEETMEEQK	1	Unmodified	2508.173	0.17302151	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.14	0.35		6	1							2		3	2	99.844	99.718	3	5.8042E-05	87396	160511_QHF_FH_JSI9i_2	58.479	50.767			0.79821	0.86352	36.599	7	6	Median	1.2191	1.0677	14.676	2	2	Median	NaN	NaN	NaN	0	0	Median	0.79821	0.79558	54.117	3	2	Median	0.67606	0.73273	23.227	2	2	Median	145340000	73826000	71516000	29780000	12518000	17263000	0	0	0	69702000	33764000	35938000	45860000	27544000	18316000	21445	2561	20300	131890;131891;131892;131893;131894;131895;131896	178872;178873;178874;178875;178876;178877;178878	178875			7	
GVFMMCIPPPNVTGSLHLGHALTNAIQDSLTR	0	Unmodified	3446.7261	0.72612047	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.333	85.941	4	7.0167E-08	48620	160513_QHF_FH_JSI11Kac_6	91.603	80.498			0.98843	0.95516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98843	0.95516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	103280000	34911000	68365000	0	0	0	0	0	0	103280000	34911000	68365000	0	0	0	21446	1283	20301	131897	178879	178879			1	
GVFNSGLK	1	Unmodified	820.4443	0.44430282	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	27.293	27.274	2	0.00045826	23354	160511_QHF_FH_JSI11i_3	107.59	87.747			0.94234	0.92184	26.523	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82275	0.7642	NaN	1	0	Median	1.0793	1.112	NaN	1	0	Median	475400000	223260000	252140000	0	0	0	0	0	0	156870000	81811000	75061000	318530000	141450000	177080000	21447	4122	20302	131898;131899;131900	178880;178881;178882;178883;178884	178880			5	
GVFPENFTERVP	0	Unmodified	1390.6881	0.68811492	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								2	1			72.242	71.427	2	0.0065845	62912	160511_QHF_FH_JSI9i_2	89.171	78.8			0.83027	0.98945	14.82	3	3	Plateau	1.175	1.0293	20.709	2	2	Median	0.79871	0.98945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183380000	89679000	93699000	104900000	53119000	51781000	78478000	36560000	41918000	0	0	0	0	0	0	21448	146	20303	131901;131902;131903	178885;178886;178887	178886			3	
GVFTKELPSGK	2	Acetyl (K)	1203.6499	0.6499385	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.881						2	4	4	1	1	3	5	2	62.172	51.691	2;3	2.6358E-09	28118	160513_QHF_FH_JSI10Kac_4	127.42	88.402			0.7114	0.77819	45.355	10	0	Median	1.0669	0.91566	NaN	1	0	Median	0.79389	0.95084	10.16	3	0	Plateau	0.44079	0.43152	19.566	4	0	Median	0.7114	0.77819	4.0225	2	0	Median	335560000	221410000	114150000	11274000	6303400	4970200	73484000	43239000	30245000	192230000	138010000	54222000	58573000	33862000	24710000	21449	1333	20304	131904;131905;131906;131907;131908;131909;131910;131911;131912;131913;131914	178888;178889;178890;178891;178892;178893;178894;178895;178896;178897;178898;178899;178900;178901;178902;178903;178904;178905;178906;178907;178908	178892	1260		21	
GVFTKELPSGKK	3	Acetyl (K)	1331.7449	0.74490152	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								4	8	2	4	3	3	51.354	41.576	2;3	2.7123E-05	22515	160513_QHF_FH_JSI11Kac_6	98.337	86.069			0.76784	0.79082	96.255	10	1	Median	0.84207	0.71128	14.956	2	0	Median	0.86273	1.0142	16.653	2	0	Median	0.47	0.45943	139.28	3	1	Median	0.75564	0.79103	13.812	3	0	Plateau	245630000	149680000	95950000	29594000	14540000	15054000	63998000	34480000	29518000	105520000	72994000	32530000	46514000	27666000	18848000	21450	1333	20305	131915;131916;131917;131918;131919;131920;131921;131922;131923;131924;131925;131926	178909;178910;178911;178912;178913;178914;178915;178916;178917;178918;178919;178920;178921;178922	178911	1260		14	
GVFVNVEK	1	Unmodified	890.48617	0.48616764	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.536	35.408	2	0.02187	30056	160511_QHF_FH_JSI12i_3	55.37	37.522			0.8284	0.82255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8284	0.82255	NaN	1	1	Median	76927000	41325000	35603000	0	0	0	0	0	0	0	0	0	76927000	41325000	35603000	21451	5024	20306	131927	178923	178923			1	
GVFVQSVLPYFVATK	1	Unmodified	1653.913	0.91302948	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	1	2	95.005	89.424	2	1.9458E-57	82056	160511_QHF_FH_JSI9i_3	262	237.15			1.3057	0.8747	17.094	6	3	Linear	1.3752	1.1335	3.7314	2	1	Median	1.264	1.4873	NaN	1	1	Median	1.3488	1.3333	NaN	1	0	Median	0.98427	1.0422	20.553	2	1	Median	871350000	396100000	475250000	197840000	82744000	115090000	36082000	12129000	23953000	33744000	12108000	21636000	603690000	289120000	314570000	21452	2854	20307	131928;131929;131930;131931;131932;131933	178924;178925;178926;178927;178928	178925			5	
GVFVVAAK	1	Unmodified	789.47487	0.47487467	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.48	4	4	3			2	3	4	4	4	7	7	6	42.453	36.564	2	0.00038521	19907	160513_QHF_FH_JSI11Kac_6	114.54	90.567			0.94347	0.99719	15.184	23	2	Median	1.2112	1.0194	10.234	4	0	Median	0.81501	0.99719	10.489	7	0	Median	0.97924	0.97379	22.085	7	1	Median	0.94347	1.0237	16.377	5	1	Median	2570100000	1330100000	1240000000	499330000	245780000	253550000	698420000	404570000	293850000	1040400000	520000000	520440000	331910000	159700000	172210000	21453	1545	20308	131934;131935;131936;131937;131938;131939;131940;131941;131942;131943;131944;131945;131946;131947;131948;131949;131950;131951;131952;131953;131954;131955;131956;131957	178929;178930;178931;178932;178933;178934;178935;178936;178937;178938;178939;178940;178941;178942;178943;178944;178945;178946;178947;178948;178949;178950;178951;178952;178953;178954;178955;178956;178957;178958;178959;178960;178961;178962;178963;178964	178938			36	
GVGAAATAVTQALNELLQHVK	1	Unmodified	2090.1484	0.14840216	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	4	2	1	99.102	93.454	3	2.2791E-234	50671	160513_QHF_FH_JSI9Kac_6	324.12	292.7			0.75036	0.78416	4.8271	7	3	Median	0.89153	0.75973	NaN	1	0	Median	0.71192	0.83905	3.719	3	2	Plateau	0.78362	0.74903	2.2327	2	0	Median	0.75036	0.78962	NaN	1	1	Median	2403200000	1338300000	1064800000	496610000	246230000	250380000	834420000	483480000	350940000	600120000	349710000	250410000	472010000	258930000	213080000	21454	5616	20309	131958;131959;131960;131961;131962;131963;131964;131965	178965;178966;178967;178968;178969;178970;178971;178972	178969			8	
GVGADPEAR	0	Unmodified	870.41954	0.41954463	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1	0	3									1		1	1	9.0617	8.6564	2	0.034324	6159	160511_QHF_FH_JSI9i_1	60.478	42.629			0.51592	0.84973	29.743	3	0	Plateau	1.0198	0.85181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.51592	0.50031	NaN	1	0	Median	0.49596	0.51854	NaN	1	0	Median	251450000	132930000	118520000	95898000	39597000	56302000	0	0	0	76646000	43478000	33168000	78910000	49856000	29054000	21455	1871	20310	131966;131967;131968	178973	178973			0	
GVGAEPLLPWNR	0	Unmodified	1307.6986	0.69862003	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	71.937	71.233	2	1.57E-06	61819	160511_QHF_FH_JSI12i_3	176.38	134.93			1.0622	1.149	14.917	5	3	Median	1.8325	1.4646	NaN	1	0	Median	1.0411	1.2026	NaN	1	1	Median	1.2199	1.149	NaN	1	0	Median	1.0216	1.0357	8.807	2	2	Median	478280000	242350000	235930000	48462000	18003000	30459000	66021000	30090000	35931000	122980000	62423000	60558000	240820000	131830000	108980000	21456	4628	20311	131969;131970;131971;131972;131973	178974;178975;178976;178977;178978	178978			5	
GVGAIYIR	0	Unmodified	847.49159	0.49158736	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.58			3					4	4	4	3	2	2	45.007	37.872	2	1.5748E-10	20205	160513_QHF_FH_JSI9Kac_6	150.07	92.605			1.0492	1.0573	15.023	10	1	Median	1.2361	1.0658	23.256	3	1	Median	0.87173	1.0389	13.165	3	0	Median	1.0264	0.99761	0.94839	2	0	Median	1.0891	1.1344	8.927	2	0	Median	632240000	300110000	332130000	109460000	44537000	64927000	155890000	80005000	75890000	114590000	54109000	60484000	252290000	121460000	130820000	21457	5712	20312	131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984	178979;178980;178981;178982;178983;178984;178985;178986;178987;178988;178989;178990;178991;178992;178993	178988			15	
GVGDDQLGEESEERDDHLLPM	0	Unmodified	2340.0176	0.017583497	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	66.97	66.51	3	1.1704E-05	60529	160511_QHF_FH_JSI12i_1	66.386	58.199			1.1166	1.0641	9.1613	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83894	0.97277	NaN	1	0	Median	1.1166	1.0641	NaN	1	0	Median	1.1367	1.1684	NaN	1	0	Median	311630000	168200000	143430000	0	0	0	102210000	57966000	44245000	107970000	51708000	56264000	101450000	58528000	42919000	21458	1178	20313	131985;131986;131987	178994;178995;178996;178997;178998;178999;179000;179001	178998			8	
GVGDDQLGEESEERDDHLLPM	0	Oxidation (M)	2356.0125	0.012498119	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	1	1				By MS/MS	1	0	1												1	55.72	55.059	3	0.015035	50039	160511_QHF_FH_JSI12i_1	36.805	31.903			1.5921	1.5848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5921	1.5848	NaN	1	1	Median	16171000	4075000	12096000	0	0	0	0	0	0	0	0	0	16171000	4075000	12096000	21459	1178	20313	131988	179002	179002		805	1	
GVGDGTVSWGLEDDEDMTLTR	0	Unmodified	2251.9903	0.99030611	2715;2398	Q13404;Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	4	2	82.196	81.777	2;3	2.2426E-186	74347	160511_QHF_FH_JSI10i_1	319.8	312.76			0.97217	1.006	25.517	11	2	Median	0.87332	0.7073	57.322	2	1	Median	0.83356	0.95644	5.1425	3	0	Median	1.2149	1.1697	12.291	4	1	Linear	1.0318	1.1085	8.9773	2	0	Median	574300000	295750000	278550000	56521000	33128000	23393000	214470000	116460000	98008000	174530000	85616000	88910000	128780000	60542000	68240000	21460	2398;2715	20314	131989;131990;131991;131992;131993;131994;131995;131996;131997;131998;131999	179003;179004;179005;179006;179007;179008;179009;179010;179011;179012;179013;179014;179015;179016;179017;179018;179019;179020;179021;179022;179023;179024;179025;179026	179019			23	
GVGDSFK	1	Unmodified	708.34425	0.34425443	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.392	14.934	2	0.010175	12529	160511_QHF_FH_JSI10i_1	81.32	62.515			1.1071	1.062	13.583	4	4	Median	1.1851	0.96643	NaN	1	1	Median	1.0342	1.2142	NaN	1	1	Median	1.2043	1.1671	NaN	1	1	Median	0.87654	0.92315	NaN	1	1	Median	737860000	357000000	380860000	132200000	61711000	70492000	213630000	100370000	113260000	166010000	80849000	85162000	226020000	114070000	111950000	21461	5633	20315	132000;132001;132002;132003	179027;179028;179029;179030	179029			4	
GVGGAVPGAVLEPVAR	0	Unmodified	1447.8147	0.81471242	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	1		2	62.499	61.191	2	0.0042338	53774	160511_QHF_FH_JSI9i_2	54.7	28.102			0.44546	0.49488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44546	0.49488	NaN	1	1	Median	28424000	20265000	8158900	0	0	0	0	0	0	0	0	0	28424000	20265000	8158900	21462	5608	20316	132004;132005;132006;132007	179031;179032;179033;179034;179035	179034			5	
GVGIISEGNETVEDIAAR	0	Unmodified	1828.9167	0.91667089	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.682	7	7	2							4	3	4	5	70.341	69.658	2;3	7.1606E-184	63457	160511_QHF_FH_JSI12i_1	318.49	302.95			0.88447	0.89852	9.4703	14	11	Median	1.2094	1.0052	3.2249	4	4	Median	0.68417	0.84644	3.5274	3	2	Median	0.8697	0.86103	4.8786	4	4	Median	0.8795	0.91378	8.9741	3	1	Median	2486200000	1298400000	1187800000	583920000	249910000	334010000	578100000	342460000	235640000	887220000	485110000	402110000	436970000	220930000	216040000	21463	821;1032	20317	132008;132009;132010;132011;132012;132013;132014;132015;132016;132017;132018;132019;132020;132021;132022;132023	179036;179037;179038;179039;179040;179041;179042;179043;179044;179045;179046;179047;179048;179049;179050;179051;179052;179053;179054	179040			19	
GVGISVLEMSHR	0	Unmodified	1283.6656	0.66560534	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.87	6.68		3	5						7	4	5	4	2	57.222	53.063	2;3	8.9726E-24	43480	160511_QHF_FH_JSI9i_3	182.64	171.42			0.95994	1.0429	14.272	13	1	Median	1.3341	1.0694	8.7453	4	0	Median	0.89651	1.0216	19.343	5	1	Median	0.95994	0.91463	8.6619	3	0	Median	1.1018	1.1961	NaN	1	0	Median	1105600000	549190000	556380000	391400000	171020000	220380000	410800000	222750000	188050000	281100000	144710000	136390000	22266000	10707000	11559000	21464	5697	20318	132024;132025;132026;132027;132028;132029;132030;132031;132032;132033;132034;132035;132036;132037;132038	179055;179056;179057;179058;179059;179060;179061;179062;179063;179064;179065;179066;179067;179068;179069;179070;179071	179061			13	
GVGQAAIR	0	Unmodified	770.43989	0.43988615	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26	2	4	2				1	4		2	3	4	4	13.176	9.2383	2	1.9535E-06	8324	160511_QHF_FH_JSI11i_2	145.88	91.826			0.9026	0.93881	11.067	12	3	Median	1.145	0.96424	5.3665	2	0	Median	0.73923	0.89096	2.3643	2	1	Median	0.95336	0.95473	19.933	4	1	Median	0.88695	0.96561	3.4469	4	1	Median	3302600000	1669200000	1633400000	568070000	247900000	320170000	462600000	273750000	188860000	1364500000	689040000	675510000	907350000	458490000	448860000	21465	1139	20319	132039;132040;132041;132042;132043;132044;132045;132046;132047;132048;132049;132050;132051	179072;179073;179074;179075;179076;179077;179078;179079;179080;179081;179082;179083;179084;179085;179086;179087	179078			16	
GVGQADWTPDLGLR	0	Unmodified	1483.7419	0.7419414	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	71.664	70.743	2	1.164E-06	60994	160511_QHF_FH_JSI12i_2	134.98	113.6			0.79978	0.78783	19.625	3	0	Plateau	0.69966	0.57739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79978	0.78783	NaN	1	0	Median	0.76531	0.83007	NaN	1	0	Median	130410000	68529000	61880000	34902000	21670000	13232000	0	0	0	55938000	26129000	29809000	39569000	20730000	18839000	21466	4581	20320	132052;132053;132054	179088;179089;179090;179091;179092	179089			5	
GVGSFEKVGK	2	Acetyl (K)	1048.5553	0.55530983	5845				yes	yes	1	0	0	1		By MS/MS			14	0							1				1			54.524	43.941	2	0.021655	24444	160513_QHF_FH_JSI10Kac_4	60.59	26.793	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5283100	5283100	0	0	0	0	5283100	5283100	0	0	0	0	0	0	0	21467	5845	20321	132055	179093	179093	3578		1	
GVGTDEACLIEILASR	0	Unmodified	1702.856	0.85598488	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		99.092	98.916	2	1.3156E-06	86721	160511_QHF_FH_JSI11i_2	126.95	105.72			0.46853	0.46684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46853	0.46684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18372000	12489000	5883500	0	0	0	0	0	0	18372000	12489000	5883500	0	0	0	21468	1723	20322	132056	179094	179094			1	
GVGVALDDPYENYRR	0	Unmodified	1722.8325	0.83254733	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	2	3	50.358	49.634	2;3	4.0367E-07	43785	160511_QHF_FH_JSI10i_2	89.247	54.869			1.0043	1.0088	24.038	6	2	Median	1.1181	0.94753	NaN	1	0	Median	0.6919	0.86118	19.18	2	1	Median	1.4629	1.3884	8.2801	2	1	Median	0.90209	1.0319	NaN	1	0	Median	417350000	191530000	225810000	51047000	25709000	25339000	114100000	60979000	53120000	216460000	85075000	131380000	35743000	19770000	15973000	21469	3432	20323	132057;132058;132059;132060;132061;132062;132063;132064;132065	179095;179096;179097;179098;179099;179100;179101;179102	179100			8	
GVHAVLK	1	Unmodified	722.44391	0.44390889	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	10.176	9.7603	2	0.013952	6974	160511_QHF_FH_JSI12i_3	66.994	31.187			1.0066	1.0217	4.9196	3	0	Plateau	1.1659	0.92603	NaN	1	0	Median	0.84189	0.97587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0066	1.0217	NaN	1	0	Median	220710000	116900000	103810000	50794000	21183000	29611000	61719000	34487000	27231000	0	0	0	108190000	61228000	46965000	21470	641	20324	132066;132067;132068	179103	179103			1	
GVHCVMSLGVPGPATLAK	1	Unmodified	1792.9328	0.93279542	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	67.27	66.182	2;3	1.5531E-16	57085	160511_QHF_FH_JSI12i_3	125.54	101.56			1.1717	1.1852	11.483	3	0	Plateau	1.1994	0.9562	NaN	1	0	Median	0.836	1.0143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1717	1.1936	NaN	1	0	Median	345550000	153590000	191960000	49349000	26635000	22714000	86677000	47738000	38939000	0	0	0	209520000	79213000	130310000	21471	4010	20325	132069;132070;132071;132072	179104;179105;179106;179107;179108;179109	179109			5	
GVHPKFPEGGK	2	Acetyl (K)	1193.6193	0.61930707	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		33.118	24.299	3	0.0067219	13692	160513_QHF_FH_JSI11Kac_6	45.257	29.367			0.61139	0.65469	67.791	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88381	1.0574	NaN	1	0	Median	0.42295	0.40537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12702000	9130800	3571400	0	0	0	3280200	1873800	1406400	9421900	7257000	2164900	0	0	0	21472	5309	20326	132073;132074	179110	179110	3360		1	
GVHQKEGWPSSAYGVTK	2	Acetyl (K)	1871.9166	0.91661131	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	52.487	43.115	3	0.00027283	23319	160513_QHF_FH_JSI11Kac_6	70.783	65.123			0.24924	0.24618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24924	0.24618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34324000	30584000	3740500	0	0	0	6207400	6207400	0	24750000	21010000	3740500	3366700	3366700	0	21473	1092	20327	132075;132076;132077	179111;179112;179113;179114;179115	179111	946		5	
GVHYISVSATR	0	Unmodified	1188.6251	0.62512073	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	34.873	25.915	3	0.00077749	14659	160513_QHF_FH_JSI10Kac_6	61.958	41.17			1.0996	1.1031	7.031	4	0	Median	1.1767	0.99849	NaN	1	0	Median	0.92021	1.076	NaN	1	0	Median	1.1692	1.1308	NaN	1	0	Median	1.034	1.1752	NaN	1	0	Median	27919000	13173000	14746000	8478300	3744700	4733600	11741000	6493500	5247500	5585500	2028200	3557200	2114500	906490	1208000	21474	2491	20328	132078;132079;132080;132081	179116;179117	179117			2	
GVIALCIEDGSIHR	0	Unmodified	1538.7875	0.78751139	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	59.76	59.626	3	0.00019718	51400	160511_QHF_FH_JSI12i_3	68.171	56.588			1.1828	1.1677	18.109	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0758	1.0274	NaN	1	0	Median	1.3004	1.3273	NaN	1	0	Median	269180000	103250000	165940000	0	0	0	0	0	0	81441000	37220000	44221000	187740000	66027000	121720000	21475	1367	20329	132082;132083	179118	179118			1	
GVIDLAALGITGR	0	Unmodified	1254.7296	0.7295858	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	90.246	90.224	2	7.5366E-05	78456	160511_QHF_FH_JSI12i_3	100.93	73.816			1.0251	1.0392	14.571	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1456	1.0676	20.488	2	2	Median	1.0251	1.0392	NaN	1	0	Median	78974000	36724000	42250000	0	0	0	0	0	0	44448000	20558000	23890000	34526000	16166000	18360000	21476	4286	20330	132084;132085;132086	179119;179120;179121;179122	179122			4	
GVIDLIFEK	1	Unmodified	1032.5855	0.58554733	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							3	2	4	4	89.369	88.851	1;2	1.0326E-16	79321	160511_QHF_FH_JSI11i_3	179.68	141.44			0.94519	0.92112	17.615	12	5	Median	1.2137	1.0019	14.751	2	1	Median	0.74402	0.89464	4.1336	2	0	Median	0.96151	0.9253	23.062	4	2	Median	0.94519	0.97363	20.918	4	2	Median	2694700000	1324300000	1370400000	283410000	132860000	150550000	384900000	197190000	187710000	693470000	352260000	341210000	1332900000	641980000	690900000	21477	2217	20331	132087;132088;132089;132090;132091;132092;132093;132094;132095;132096;132097;132098;132099	179123;179124;179125;179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136;179137;179138;179139;179140;179141;179142;179143;179144;179145;179146;179147;179148;179149;179150;179151	179126			29	
GVIDLVFEK	1	Unmodified	1018.5699	0.56989727	334	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.39	88.279	2	0.0037855	76660	160511_QHF_FH_JSI12i_3	69.423	51.388			0.14949	0.14745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14949	0.14745	NaN	1	1	Median	27006000	24057000	2949500	0	0	0	0	0	0	0	0	0	27006000	24057000	2949500	21478	334	20332	132100	179152	179152			1	
GVIDMGNSLIER	0	Unmodified	1302.6602	0.66018561	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By matching	By MS/MS		1.33	0.471	2	1									1	2		65.044	64.596	2	1.6033E-05	56233	160511_QHF_FH_JSI11i_2	121.29	97.765			1.147	1.1054	23.076	3	1	Median	NaN	NaN	NaN	0	0	Median	0.80475	0.91022	NaN	1	0	Median	1.2836	1.2623	18.768	2	1	Median	NaN	NaN	NaN	0	0	Median	190380000	79335000	111040000	0	0	0	34525000	16409000	18116000	155850000	62926000	92927000	0	0	0	21479	2470	20333	132101;132102;132103	179153;179154;179155	179155			3	
GVIDVFLHAWK	1	Unmodified	1283.7026	0.70264277	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	3	2	3	3	94.126	88.893	2;3	4.5137E-16	44970	160513_QHF_FH_JSI9Kac_6	144.77	121.02			1.0029	1.0507	21.233	10	1	Median	0.9342	0.78616	6.6882	2	0	Median	0.95063	1.1171	23.601	2	0	Median	1.314	1.2578	21.202	3	1	Median	1.0188	1.0368	8.0644	3	0	Plateau	381430000	199950000	181480000	91811000	45686000	46125000	106030000	58582000	47448000	84304000	41553000	42750000	99285000	54128000	45156000	21480	5374	20334	132104;132105;132106;132107;132108;132109;132110;132111;132112;132113;132114	179156;179157;179158;179159;179160;179161;179162;179163;179164;179165;179166;179167;179168;179169;179170	179163			15	
GVIDYIFYSK	1	Unmodified	1203.6176	0.61757574	4167	Q96LI5	CNOT6L	CCR4-NOT transcription complex subunit 6-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	2	1	1	1	83.998	79.881	2	3.714E-05	72687	160511_QHF_FH_JSI12i_3	105.4	94.232			0.8742	0.85789	38.607	5	3	Median	1.4195	1.2133	68.506	2	2	Median	0.72155	0.84477	NaN	1	0	Median	1.088	1.0575	NaN	1	0	Median	0.82862	0.85789	NaN	1	1	Median	124670000	57119000	67555000	38494000	11641000	26853000	14976000	7847400	7128900	21559000	11619000	9939600	49645000	26012000	23633000	21481	4167	20335	132115;132116;132117;132118;132119	179171;179172;179173;179174;179175	179175			5	
GVIFATYSSLIGESQSGGK	1	Unmodified	1899.9578	0.95780742	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				85.542	84.318	3	0.034575	69205	160511_QHF_FH_JSI9i_3	23.853	14.195			1.1379	0.96513	NaN	1	0	Median	1.1379	0.96513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10144000	3592000	6552500	10144000	3592000	6552500	0	0	0	0	0	0	0	0	0	21482	16	20336	132120	179176	179176			1	
GVIFGQTSSTFTFADLAK	1	Unmodified	1888.9571	0.95707914	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.84		2	9						4	4	1	5	5	96.687	94.505	2;3	3.0788E-81	87859	160511_QHF_FH_JSI11i_3	241.52	219.48			1.3709	1.1505	47.485	13	5	Median	1.7939	1.5418	20.089	4	2	Median	0.7689	0.87586	NaN	1	0	Median	1.5409	1.4749	59.115	4	1	Median	0.75201	0.78774	51.145	4	2	Median	540520000	239390000	301130000	68905000	22264000	46641000	19829000	10608000	9221100	175090000	73531000	101550000	276700000	132990000	143710000	21483	1685	20337	132121;132122;132123;132124;132125;132126;132127;132128;132129;132130;132131;132132;132133;132134;132135	179177;179178;179179;179180;179181;179182;179183;179184;179185;179186;179187;179188;179189;179190;179191;179192;179193;179194;179195;179196;179197	179178			20	
GVIFTEAFVAR	0	Unmodified	1208.6554	0.65535823	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3	1	1	1	1	77.159	71.087	2	0.000112	37516	160513_QHF_FH_JSI9Kac_6	94.692	79.541			0.7203	0.73105	14.223	4	1	Median	0.79134	0.68415	NaN	1	1	Median	0.65564	0.78117	NaN	1	0	Median	0.84298	0.80887	NaN	1	0	Median	0.58147	0.59173	NaN	1	0	Median	290700000	178330000	112370000	45914000	29688000	16226000	76762000	47102000	29660000	30021000	16576000	13444000	138000000	84962000	53042000	21484	615	20338	132136;132137;132138;132139	179198;179199;179200;179201	179199			4	
GVIFYLR	0	Unmodified	866.50142	0.50142377	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.2		1	4					4	4	3	4	3	3	68.462	62.159	2	6.9342E-25	32461	160513_QHF_FH_JSI12Kac_6	186.74	114.6			1.0721	1.0787	8.8593	13	3	Median	1.1995	1.0068	5.7354	3	1	Median	0.95087	1.1114	6.9706	4	1	Median	1.0878	1.0136	8.3076	3	1	Plateau	1.0112	1.0548	13.007	3	0	Median	6376500000	3030400000	3346100000	1336400000	596060000	740300000	2417000000	1122100000	1295000000	1614800000	810440000	804360000	1008300000	501860000	506450000	21485	736	20339	132140;132141;132142;132143;132144;132145;132146;132147;132148;132149;132150;132151;132152	179202;179203;179204;179205;179206;179207;179208;179209;179210;179211;179212;179213;179214;179215;179216;179217;179218;179219	179216			18	
GVIINTASVAAFEGQVGQAAYSASK	1	Unmodified	2438.2442	0.24415304	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	3.43	5	9	15						2	4	7	8	12	94.702	94.019	2;3;4	3.1608E-76	84592	160511_QHF_FH_JSI11i_3	199.94	195.3			0.88906	0.87579	15.628	29	12	Median	1.1778	0.9698	10.988	4	1	Median	0.68655	0.8087	8.9597	6	3	Median	1.0099	0.95921	10.007	7	2	Median	0.83048	0.85068	19.928	12	6	Median	4524400000	2475200000	2049200000	507470000	224530000	282940000	979790000	605160000	374630000	1000900000	503030000	497870000	2036300000	1142500000	893730000	21486	4304	20340	132153;132154;132155;132156;132157;132158;132159;132160;132161;132162;132163;132164;132165;132166;132167;132168;132169;132170;132171;132172;132173;132174;132175;132176;132177;132178;132179;132180;132181;132182;132183	179220;179221;179222;179223;179224;179225;179226;179227;179228;179229;179230;179231;179232;179233;179234;179235;179236;179237;179238;179239;179240;179241;179242;179243;179244;179245;179246;179247;179248;179249;179250;179251;179252;179253;179254;179255;179256;179257;179258;179259;179260;179261;179262;179263;179264;179265;179266;179267;179268;179269;179270;179271;179272;179273;179274;179275;179276;179277;179278;179279	179223			59	
GVILLIVDK	1	Unmodified	968.62702	0.62701821	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	5.6	5.2			4						1	1	2	1	1	77.981	76.234	2	0.0024414	40734	160513_QHF_FH_JSI10Kac_6	78.334	49.436			1.0487	0.95324	20.001	5	0	Median	1.1266	0.93697	NaN	1	0	Median	0.90443	1.0552	22.185	2	0	Median	0.99528	0.95324	NaN	1	0	Median	1.388	1.4184	NaN	1	0	Median	150230000	73590000	76637000	13096000	5647800	7448400	69785000	38422000	31363000	30438000	11634000	18804000	36907000	17886000	19021000	21487	2084	20341	132184;132185;132186;132187;132188	179280;179281;179282	179281			2	
GVINMGSYNYLGFAR	0	Unmodified	1660.8032	0.80316145	273	O15270	SPTLC2	Serine palmitoyltransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			85.065	83.857	2	2.0365E-11	68939	160511_QHF_FH_JSI9i_3	104.52	88.269			0.79669	0.90635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79669	0.90635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13708000	6572200	7136100	0	0	0	13708000	6572200	7136100	0	0	0	0	0	0	21488	273	20342	132189;132190	179283;179284	179284			2	
GVIPMNAK	1	Unmodified	828.45276	0.45275902	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.34		4	1				2			1	2	2	2	30.868	27.62	2	0.00027121	23250	160511_QHF_FH_JSI12i_2	114.54	114.54			0.71143	0.77951	21.449	7	0	Median	1.1778	1.0177	NaN	1	0	Median	0.67529	0.79986	23.038	2	0	Median	0.70671	0.70855	35.026	2	0	Median	0.70059	0.74199	6.9759	2	0	Median	719530000	405110000	314420000	184080000	88691000	95391000	120990000	76961000	44026000	163670000	94475000	69199000	250790000	144980000	105810000	21489	5596	20343	132191;132192;132193;132194;132195;132196;132197	179285;179286;179287;179288;179289	179286			5	
GVIPSTLAFALADTVFSTQDFLTLFYTLR	0	Unmodified	3206.6904	0.69035334	4307	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.6	5.12		1	1	3				1	2	1	3	4		105.88	99.673	3;4	9.6296E-21	36788	160513_QHF_FH_JSI10Kac_1	115.63	109.73			0.85994	0.93938	31.388	6	3	Median	0.80713	0.75504	NaN	1	1	Median	1.0992	1.3004	27.247	2	0	Median	0.76589	0.74504	27.118	3	2	Plateau	NaN	NaN	NaN	0	0	Median	38146000	20237000	17909000	3203600	2150900	1052700	22922000	11476000	11446000	12020000	6610400	5409500	0	0	0	21490	4307	20344	132198;132199;132200;132201;132202;132203;132204;132205	179290;179291;179292;179293;179294;179295;179296;179297;179298	179297			9	
GVIQAIQK	1	Unmodified	855.5178	0.51780212	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	27.189	26.398	2	0.00043207	21825	160511_QHF_FH_JSI12i_3	119.57	58.778			1.0451	0.98319	24.689	8	0	Median	1.0271	0.84892	12.252	2	0	Median	1.0697	1.2818	28.997	2	0	Median	1.0451	1.0077	13.234	2	0	Median	1.0882	1.1581	34.423	2	0	Median	701500000	357650000	343850000	113370000	58422000	54950000	146430000	76330000	70095000	219530000	108130000	111410000	222170000	114770000	107400000	21491	4919	20345	132206;132207;132208;132209;132210;132211;132212;132213	179299;179300;179301;179302;179303;179304;179305	179304			7	
GVIQVYDLGQDGQGMSR	0	Unmodified	1821.8679	0.86794655	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	64.31	63.545	2	3E-30	55351	160511_QHF_FH_JSI11i_2	187.98	157.43			0.92233	0.99919	12.486	8	0	Median	1.1112	0.94495	27.293	2	0	Median	0.80921	0.96456	9.6049	2	0	Median	0.96331	0.95365	13.714	2	0	Median	0.9237	1.0024	5.0646	2	0	Median	589460000	311550000	277910000	120110000	57222000	62889000	149180000	84581000	64595000	168300000	85823000	82474000	151880000	83925000	67950000	21492	558	20346	132214;132215;132216;132217;132218;132219;132220;132221	179306;179307;179308;179309;179310;179311;179312;179313;179314;179315;179316	179313			10	
GVIQVYDLGQDGQGMSR	0	Oxidation (M)	1837.8629	0.86286118	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.502	56.976	2	5.5521E-05	51579	160511_QHF_FH_JSI11i_1	85.258	71.831			0.80521	0.87456	50.679	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52112	0.61117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2442	1.2515	NaN	1	0	Median	41935000	22713000	19222000	0	0	0	16628000	12080000	4548200	0	0	0	25307000	10633000	14674000	21493	558	20346	132222;132223;132224;132225	179317;179318;179319;179320	179317		209	4	
GVISTPVIR	0	Unmodified	940.57057	0.57056597	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.71	1	4	3					3		2	2	4	3	46.898	44.15	2	7.9612E-05	37626	160511_QHF_FH_JSI12i_3	95.531	61.98			1.121	1.0337	16.397	10	1	Median	1.1874	0.99903	11.37	2	1	Median	0.9621	1.1453	21.031	2	0	Median	1.0976	1.0723	17.695	4	0	Median	0.99356	1.0586	26.76	2	0	Median	954600000	475680000	478910000	98959000	44599000	54359000	187200000	102430000	84770000	327090000	155780000	171310000	341350000	172870000	168480000	21494	5147	20347	132226;132227;132228;132229;132230;132231;132232;132233;132234;132235;132236	179321;179322;179323;179324;179325;179326;179327;179328;179329;179330;179331;179332;179333	179332			13	
GVITDQNSDGYCQTGTMSR	0	Unmodified	2088.8841	0.8840669	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	35.134	34.781	2	2.0772E-27	31086	160511_QHF_FH_JSI10i_1	218.31	211.62			0.76761	0.87507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76761	0.87507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21753000	14390000	7363800	0	0	0	21753000	14390000	7363800	0	0	0	0	0	0	21495	1085	20348	132237;132238	179334;179335	179335			2	
GVITMNEEYETR	0	Unmodified	1440.6555	0.65549416	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	41.354	40.285	2	6.4663E-06	34336	160511_QHF_FH_JSI12i_2	119.16	112.3			1.2081	1.3401	25.943	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6304	1.6948	NaN	1	1	Median	1.068	1.1631	20.032	2	2	Median	90662000	40247000	50415000	0	0	0	0	0	0	36306000	11812000	24494000	54356000	28435000	25921000	21496	3764	20349	132239;132240;132241;132242	179336;179337;179338;179339;179340	179337			5	
GVITRPDLPSK	1	Unmodified	1181.6768	0.67682195	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			6							2	2	1	1	34.534	33.561	2;3	5.6657E-05	27450	160511_QHF_FH_JSI9i_3	89.9	75.221			0.83932	0.83863	6.7518	6	0	Median	1.0912	0.89164	8.5401	2	0	Median	0.70921	0.82415	2.3344	2	0	Median	0.91587	0.84751	NaN	1	0	Median	0.76917	0.77241	NaN	1	0	Median	582430000	285580000	296850000	212340000	88479000	123860000	168440000	94768000	73673000	114520000	54804000	59718000	87133000	47529000	39604000	21497	28	20350	132243;132244;132245;132246;132247;132248	179341;179342;179343;179344;179345;179346	179345			6	
GVITVKDGK	2	Acetyl (K)	957.5495	0.54949617	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	37.295	28.139	2	5.1787E-07	16205	160513_QHF_FH_JSI10Kac_4	138.1	98.096			0.80689	0.95362	24.399	6	0	Median	NaN	NaN	NaN	0	0	Median	0.80689	0.95425	7.4731	2	0	Median	0.63722	0.621	10.279	2	0	Median	0.91065	1.008	0.46459	2	0	Median	76095000	41004000	35091000	0	0	0	26256000	13810000	12446000	22180000	13198000	8981500	27659000	13996000	13663000	21498	980	20351	132249;132250;132251;132252;132253;132254	179347;179348;179349;179350;179351;179352	179348	758		5	
GVIVDKDFSHPQMPK	2	Acetyl (K)	1738.8712	0.87124102	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		70.619	59.895	3	0.00048457	32095	160513_QHF_FH_JSI11Kac_5	67.136	62.82			0.46047	0.49956	118.47	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97658	1.1545	NaN	1	0	Median	0.21712	0.21617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25553000	19476000	6077300	0	0	0	3579000	2003000	1575900	21974000	17473000	4501300	0	0	0	21499	1630	20352	132255;132256	179353	179353	1645		1	
GVIVESAYSDIVK	1	Unmodified	1378.7344	0.73439641	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.67	5.91	1	1					1				1	2		68.769	64.91	2	4.0006E-05	56999	160511_QHF_FH_JSI11i_2	115.18	97.944			0.86883	1.0156	31.362	3	1	Median	NaN	NaN	NaN	0	0	Median	0.86883	1.0156	NaN	1	1	Median	1.0797	1.0571	44.232	2	0	Median	NaN	NaN	NaN	0	0	Median	68586000	35813000	32773000	0	0	0	2203100	1145700	1057400	66383000	34667000	31716000	0	0	0	21500	2640	20353	132257;132258;132259	179354;179355;179356	179356			3	
GVIVSTR	0	Unmodified	730.43374	0.43373813	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	5.95		4	3				1	3		2	3	3	3	16.106	12.379	2	0.0099713	10619	160511_QHF_FH_JSI12i_3	76.847	19.383			0.80247	0.92137	19.13	11	2	Median	1.342	1.127	28.484	2	1	Median	0.78445	0.97148	14.916	3	0	Plateau	1.0305	0.98387	18.069	3	0	Median	0.78213	0.85094	17.404	3	1	Median	556220000	256400000	299820000	94392000	38185000	56206000	65582000	37195000	28387000	189660000	82220000	107440000	206590000	98805000	107790000	21501	350	20354	132260;132261;132262;132263;132264;132265;132266;132267;132268;132269;132270	179357;179358;179359;179360;179361;179362;179363;179364;179365;179366;179367;179368;179369	179369			13	
GVKAVDPK	2	Acetyl (K)	854.48617	0.48616764	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	23.909	16.526	2	0.024026	10192	160513_QHF_FH_JSI12Kac_3	64.567	21.653			0.81381	0.88232	28.627	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90934	1.0803	NaN	1	0	Median	0.72832	0.72064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19614000	14034000	5580500	0	0	0	8557600	4813800	3743800	5203100	3366300	1836700	5853600	5853600	0	21502	1415	20355	132271;132272;132273	179370;179371	179370	1370;1372		2	
GVLDWLIQK	1	Unmodified	1070.6124	0.61243078	5209	Q9P2D0	IBTK	Inhibitor of Bruton tyrosine kinase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				97.979	97.641	2	0.0025867	79224	160511_QHF_FH_JSI9i_3	72.485	62.071			1.0758	0.91985	NaN	1	0	Median	1.0758	0.91985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7518700	3627300	3891300	7518700	3627300	3891300	0	0	0	0	0	0	0	0	0	21503	5209	20356	132274	179372	179372			1	
GVLEELLWFIK	1	Unmodified	1345.7646	0.76457433	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.678	93.957	2	5.3172E-36	55215	160513_QHF_FH_JSI10Kac_6	200.05	161.76			0.74253	0.8962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74253	0.8962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	284130000	173630000	110500000	0	0	0	284130000	173630000	110500000	0	0	0	0	0	0	21504	815	20357	132275	179373	179373			1	
GVLETFSGTETNK	1	Unmodified	1381.6725	0.67252444	5333	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		42.991	42.548	2	6.6196E-05	36604	160511_QHF_FH_JSI11i_2	104.79	93.631			1.0249	1.1101	17.217	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0653	1.2539	NaN	1	1	Median	0.98596	0.98289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83242000	48940000	34302000	0	0	0	52466000	32376000	20090000	30776000	16564000	14212000	0	0	0	21505	5333	20358	132276;132277	179374;179375	179375			2	
GVLFASGQNLAR	0	Unmodified	1231.6673	0.6673199	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.71		2	3						5	1	5	3	1	55.441	50.028	2	9.9976E-11	40916	160511_QHF_FH_JSI9i_3	145.17	121.4			0.75966	0.78327	16.66	6	3	Median	1.1267	0.90302	NaN	1	0	Median	0.80676	0.92785	NaN	1	0	Median	0.66216	0.62206	6.8582	3	2	Plateau	0.78718	0.86339	NaN	1	1	Median	421650000	206720000	214920000	151450000	69175000	82276000	112950000	67113000	45837000	153250000	68051000	85200000	3992900	2383400	1609500	21506	1313	20359	132278;132279;132280;132281;132282;132283;132284;132285;132286;132287	179376;179377;179378;179379;179380;179381;179382;179383;179384;179385	179379			10	
GVLFGVPGAFTPGCSK	1	Unmodified	1592.8021	0.80209882	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.76	3	8	8						3	4	6	7	5	83.799	82.264	2;3	1.6615E-10	40710	160513_QHF_FH_JSI11Kac_6	122.42	107.55			0.99813	1.0278	25.091	20	1	Median	1.2457	1.036	23.484	4	0	Median	0.99813	1.1484	26.794	4	1	Median	0.9026	0.84962	17.212	7	0	Median	1.187	1.2112	23.252	5	0	Median	6030500000	2836600000	3193900000	572840000	230570000	342270000	951190000	464480000	486710000	1810000000	960360000	849670000	2696500000	1181200000	1515300000	21507	1335	20360	132288;132289;132290;132291;132292;132293;132294;132295;132296;132297;132298;132299;132300;132301;132302;132303;132304;132305;132306;132307;132308;132309	179386;179387;179388;179389;179390;179391;179392;179393;179394;179395;179396;179397;179398;179399;179400;179401;179402;179403;179404;179405;179406;179407;179408;179409;179410;179411;179412;179413;179414;179415;179416;179417;179418;179419;179420;179421;179422;179423;179424;179425;179426;179427;179428;179429;179430;179431;179432;179433;179434;179435	179406			49	
GVLFHSGGK	1	Unmodified	900.48175	0.48175096	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	5	4	3	4	17.884	14.406	2;3	2.0223E-07	11108	160511_QHF_FH_JSI12i_3	122.13	88.338			0.91895	0.96799	17.691	14	2	Median	1.2791	1.0845	17.804	4	1	Median	0.93967	1.0954	11.19	4	1	Median	0.91064	0.85816	3.0233	3	0	Plateau	0.80476	0.81796	1.7166	3	0	Plateau	5224000000	2623000000	2600900000	1327100000	667940000	659120000	872050000	382320000	489730000	1409300000	716190000	693110000	1615500000	856570000	758980000	21508	1553	20361	132310;132311;132312;132313;132314;132315;132316;132317;132318;132319;132320;132321;132322;132323;132324;132325	179436;179437;179438;179439;179440;179441;179442;179443;179444;179445;179446;179447;179448;179449;179450;179451;179452;179453;179454;179455;179456;179457;179458;179459;179460;179461	179455			25	
GVLFSSK	1	Unmodified	736.41194	0.41194006	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.583	26.545	2	0.014061	22158	160511_QHF_FH_JSI12i_3	58.194	29.939			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21509	3869	20362	132326	179462	179462			1	
GVLFYGPPGCGK	1	Unmodified	1250.6118	0.61177885	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.59	3	4	4				2	4	4	4	7	5	5	59.611	54.455	2	1.5945E-12	29696	160513_QHF_FH_JSI10Kac_4	137	118.22			1.1128	1.0806	22.03	21	10	Median	1.2234	1.0432	5.9963	4	1	Median	0.93177	1.0806	24.405	7	4	Median	0.98384	0.91094	11.03	5	4	Median	1.2873	1.4362	15.506	5	1	Median	4644800000	2168500000	2476200000	405190000	193480000	211710000	875900000	432690000	443210000	1771800000	903650000	868190000	1591800000	638720000	953120000	21510	1846	20363	132327;132328;132329;132330;132331;132332;132333;132334;132335;132336;132337;132338;132339;132340;132341;132342;132343;132344;132345;132346;132347	179463;179464;179465;179466;179467;179468;179469;179470;179471;179472;179473;179474;179475;179476;179477;179478;179479;179480;179481;179482;179483;179484;179485;179486;179487;179488;179489;179490;179491;179492;179493;179494	179473			32	
GVLHQFSGTETNK	1	Unmodified	1416.6997	0.69974224	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			10						2	3	3	3	3	24.097	21.895	2;3	1.7168E-10	18345	160511_QHF_FH_JSI11i_3	175.86	160.6			0.9637	0.90589	28.247	11	2	Median	1.5128	1.2204	39.201	3	0	Median	0.65566	0.79356	39.498	3	2	Median	1.0807	0.99182	9.034	3	0	Median	0.76	0.79961	6.6626	2	0	Median	752870000	361740000	391130000	120900000	62143000	58752000	127960000	68478000	59485000	222220000	108200000	114030000	281790000	122920000	158870000	21511	1287	20364	132348;132349;132350;132351;132352;132353;132354;132355;132356;132357;132358;132359	179495;179496;179497;179498;179499;179500;179501;179502;179503;179504;179505;179506;179507;179508;179509;179510	179496			16	
GVLHQVMVLDSEALR	0	Unmodified	1665.8872	0.88722543	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	69.361	68.716	2;3	1.0876E-21	59079	160511_QHF_FH_JSI12i_3	142.07	106.65			1.0176	1.0336	20.107	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0691	1.2514	31.012	2	2	Median	1.056	0.98217	7.2171	2	1	Median	1.0148	1.0596	NaN	1	0	Median	166620000	80848000	85770000	0	0	0	31466000	14937000	16529000	88281000	43054000	45227000	46871000	22856000	24015000	21512	5032	20365	132360;132361;132362;132363;132364;132365;132366;132367	179511;179512;179513;179514;179515;179516;179517;179518;179519;179520	179519			10	
GVLHTFSPSPK	1	Unmodified	1168.6241	0.6240581	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							2	1	2	5	29.819	29.332	2;3	2.3578E-07	24369	160511_QHF_FH_JSI12i_3	120.12	60.188			1.1637	1.0523	62.906	9	1	Median	1.2468	0.99442	9.4625	2	0	Median	0.93035	1.0408	NaN	1	0	Median	1.1671	1.0928	5.3374	2	0	Median	1.6477	1.6584	94.595	4	1	Median	1479600000	624230000	855380000	257700000	111740000	145960000	134190000	65970000	68219000	365040000	171860000	193190000	722670000	274660000	448010000	21513	3386	20366	132368;132369;132370;132371;132372;132373;132374;132375;132376;132377	179521;179522;179523;179524;179525;179526;179527;179528;179529;179530;179531;179532;179533;179534;179535	179534			15	
GVLIAVLDTGVDPGAPGMQVTTDGKPK	2	Unmodified	2635.3891	0.38910271	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		89.772	89.638	3	1.4148E-09	80000	160511_QHF_FH_JSI11i_3	74.206	67.013			1.1008	1.0323	8.3675	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1008	1.0323	8.3675	2	2	Median	NaN	NaN	NaN	0	0	Median	61056000	32214000	28842000	2959400	2959400	0	0	0	0	58096000	29254000	28842000	0	0	0	21514	1316	20367	132378;132379;132380	179536;179537;179538	179536			3	
GVLLAGPPGVGK	1	Unmodified	1063.639	0.63897988	4482	Q9BVQ7	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	52.977	52.86	2	0.039189	45374	160511_QHF_FH_JSI12i_3	52.255	48.118			2.1715	2.1314	23.801	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7074	2.5221	NaN	1	0	Median	1.7416	1.8013	NaN	1	0	Median	45734000	13820000	31913000	0	0	0	0	0	0	21630000	5627000	16003000	24104000	8193400	15911000	21515	4482	20368	132381;132382	179539	179539			0	
GVLLEIEDLQVNQFK	1	Unmodified	1743.9407	0.94070079	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							3	1	3	3	98.65	98.523	2;3	2.0825E-117	84849	160511_QHF_FH_JSI12i_2	280.03	253.36			0.80433	1.0528	21.66	10	3	Linear	1.5797	1.3589	34.774	3	2	Median	0.81676	0.99379	NaN	1	0	Median	0.9627	0.98606	15.874	3	1	Plateau	0.86425	0.95473	16.094	3	0	Plateau	500490000	246240000	254260000	108690000	43630000	65065000	54957000	26074000	28883000	177640000	93633000	84009000	159200000	82898000	76299000	21516	1600	20369	132383;132384;132385;132386;132387;132388;132389;132390;132391;132392	179540;179541;179542;179543;179544;179545;179546;179547;179548;179549;179550;179551;179552;179553;179554;179555;179556;179557;179558;179559;179560	179544			21	
GVLLFGPPGTGK	1	Unmodified	1141.6495	0.64954457	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.48	3	4	4				4	5	4	4	7	7	6	72.302	66.53	2	5.8493E-16	56204	160511_QHF_FH_JSI10i_3	161.63	152.05			0.92334	1.0203	21.879	22	1	Median	1.327	1.0956	8.1137	4	0	Median	0.85136	1.0191	34.32	7	0	Median	1.1387	1.1102	11.046	5	1	Median	0.84781	0.88537	18.701	6	0	Median	3209100000	1620800000	1588400000	530220000	255410000	274810000	637090000	370460000	266620000	928050000	457840000	470210000	1113800000	537040000	576740000	21517	1449	20370	132393;132394;132395;132396;132397;132398;132399;132400;132401;132402;132403;132404;132405;132406;132407;132408;132409;132410;132411;132412;132413;132414;132415;132416	179561;179562;179563;179564;179565;179566;179567;179568;179569;179570;179571;179572;179573;179574;179575;179576;179577;179578;179579;179580;179581;179582;179583;179584;179585;179586;179587;179588;179589;179590;179591;179592;179593;179594;179595;179596;179597;179598;179599	179568			39	
GVLLHGPPGCGK	1	Unmodified	1190.623	0.62301224	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			26.92	25.627	2	0.0022608	21216	160511_QHF_FH_JSI10i_3	71.379	66.767			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6503900	0	6503900	0	0	0	6503900	0	6503900	0	0	0	0	0	0	21518	285	20371	132417;132418	179600;179601	179600			2	
GVLLMLFGGVPK	1	Unmodified	1229.7206	0.72060102	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	93.121	83.894	2	2.1224E-15	47060	160513_QHF_FH_JSI9Kac_6	133.86	105.46			1.128	1.1871	38.844	3	2	Median	1.6971	1.4235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71917	0.67581	NaN	1	1	Median	1.128	1.1871	NaN	1	1	Median	413610000	201200000	212410000	173690000	78060000	95635000	0	0	0	171090000	91804000	79290000	68823000	31333000	37490000	21519	2545	20372	132419;132420;132421	179602;179603;179604	179603			3	
GVLLMLFGGVPK	1	Oxidation (M)	1245.7155	0.71551564	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	88.033	79.003	2	2.5459E-06	43620	160513_QHF_FH_JSI9Kac_6	107.47	81.527			2.5768	2.4583	50.868	2	2	Median	2.0029	1.7156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3151	3.5225	NaN	1	1	Median	70320000	19086000	51234000	30625000	12667000	17959000	0	0	0	0	0	0	39694000	6419000	33275000	21520	2545	20372	132422;132423	179605;179606	179605		2005	2	
GVLLTDGSEK	1	Unmodified	1017.5342	0.53424004	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	27.556	27.182	2	0.0019108	23997	160511_QHF_FH_JSI11i_1	75.378	51.95			0.53243	0.54019	91.407	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0471	1.031	NaN	1	1	Median	0.27073	0.28304	NaN	1	1	Median	258370000	180510000	77861000	0	0	0	0	0	0	94468000	52499000	41969000	163900000	128010000	35891000	21521	1737	20373	132424;132425	179607;179608	179607			2	
GVLLYGPPGCGK	1	Unmodified	1216.6274	0.62742892	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	15	0								2				1	1	60.43	49.534	2	0.015717	27118	160513_QHF_FH_JSI11Kac_5	58.676	46.629			0.73573	0.70161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73573	0.70161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2744500	1361900	1382600	0	0	0	0	0	0	2744500	1361900	1382600	0	0	0	21522	3605	20374	132426;132427	179609;179610	179609			2	
GVLLYGPPGTGK	1	Unmodified	1157.6445	0.64445919	1984;3586	P62195;Q8NB90	PSMC5;SPATA5	26S protease regulatory subunit 8;Spermatogenesis-associated protein 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.95	7	8	5				3	6		6	7	8	8	53.752	49.87	2	3.9993E-23	45233	160511_QHF_FH_JSI10i_2	179.8	0			0.96176	0.96362	18.634	29	4	Median	1.1497	0.97995	9.0955	6	2	Median	0.77797	0.94352	16.002	7	0	Median	0.9549	0.92317	12.604	8	1	Median	0.95364	1.0679	27.734	8	1	Median	4187400000	2232100000	1955400000	758690000	374760000	383930000	1025500000	596190000	429300000	1334000000	709880000	624110000	1069300000	551230000	518050000	21523	1984;3586	20375	132428;132429;132430;132431;132432;132433;132434;132435;132436;132437;132438;132439;132440;132441;132442;132443;132444;132445;132446;132447;132448;132449;132450;132451;132452;132453;132454;132455;132456	179611;179612;179613;179614;179615;179616;179617;179618;179619;179620;179621;179622;179623;179624;179625;179626;179627;179628;179629;179630;179631;179632;179633;179634;179635;179636;179637;179638;179639;179640;179641;179642;179643;179644;179645;179646;179647;179648;179649;179650	179647			37	
GVLMAGLYPNLIQVR	0	Unmodified	1642.9229	0.92288266	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	98.946	98.919	2	2.739E-10	85649	160511_QHF_FH_JSI12i_3	152.81	135.79			0.86653	0.82784	8.6405	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95095	0.87999	NaN	1	0	Median	0.78961	0.77877	NaN	1	0	Median	45679000	20756000	24924000	0	0	0	4487500	0	4487500	14162000	5603000	8559000	27030000	15152000	11877000	21524	3221	20376	132457;132458;132459;132460	179651;179652;179653;179654;179655	179655			5	
GVLMYGPPGCGK	1	Unmodified	1234.5838	0.58384954	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	46.748	45.768	2	1.2003E-05	40276	160511_QHF_FH_JSI10i_2	126.41	112.9			0.51387	0.50174	18.567	4	4	Median	0.57934	0.48647	NaN	1	1	Median	0.42224	0.51749	NaN	1	1	Median	0.45579	0.45644	NaN	1	1	Median	0.61563	0.69469	NaN	1	1	Median	204450000	124340000	80113000	22706000	11920000	10785000	45332000	34067000	11264000	67870000	42938000	24932000	68545000	35413000	33131000	21525	1567	20377	132461;132462;132463;132464	179656;179657;179658;179659;179660;179661;179662	179662			7	
GVLMYGPPGCGK	1	Oxidation (M)	1250.5788	0.57876417	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	38.517	38.337	2	0.0015159	32680	160511_QHF_FH_JSI12i_3	71.692	60.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21526	1567	20377	132465	179663	179663		1231	1	
GVLMYGPPGTGK	1	Unmodified	1175.6009	0.60087982	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.17	3	4	3				2	4		4	4	4	4	51.813	47.184	2	1.3565E-07	40753	160511_QHF_FH_JSI11i_2	144.65	125.38			0.89558	0.93705	13.49	16	4	Median	1.1245	0.94147	12.931	4	1	Median	0.75758	0.90609	9.6844	4	1	Median	0.92888	0.91408	7.8824	4	1	Median	0.88154	0.95257	20.689	4	1	Median	1748700000	885630000	863100000	323740000	151490000	172240000	273530000	158920000	114610000	564580000	296560000	268010000	586880000	278650000	308230000	21527	1131	20378	132466;132467;132468;132469;132470;132471;132472;132473;132474;132475;132476;132477;132478;132479;132480;132481	179664;179665;179666;179667;179668;179669;179670;179671;179672;179673;179674;179675;179676;179677;179678;179679;179680;179681;179682;179683;179684	179677			20	
GVLNSPVK	1	Unmodified	812.4756	0.47560295	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.431	23.904	2	0.019371	21115	160511_QHF_FH_JSI12i_1	57.177	35.877			0.44067	0.45811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44067	0.45811	NaN	1	1	Median	19475000	11869000	7605800	0	0	0	0	0	0	0	0	0	19475000	11869000	7605800	21528	1814	20379	132482	179685	179685			1	
GVLPYVGNLITK	1	Unmodified	1272.7442	0.74417324	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.851	84.765	2	0.00036722	73530	160511_QHF_FH_JSI12i_3	89.171	70.946			0.73832	0.72343	0.9556	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7608	0.71855	NaN	1	1	Median	0.71651	0.72833	NaN	1	1	Median	399390000	256470000	142930000	0	0	0	0	0	0	163220000	99601000	63615000	236180000	156860000	79312000	21529	2947	20380	132483;132484	179686;179687	179687			2	
GVLPYWPR	0	Unmodified	986.53379	0.53378653	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	67.279	66.982	2	0.0019527	57959	160511_QHF_FH_JSI12i_3	81.381	33.638			1.0632	1.0319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0632	1.0319	NaN	1	1	Median	32662000	17905000	14757000	0	0	0	0	0	0	0	0	0	32662000	17905000	14757000	21530	610	20381	132485;132486;132487	179688;179689;179690	179690			3	
GVLQSLIEK	1	Unmodified	985.5808	0.5807963	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	58.45	57.621	2	3.0672E-06	47395	160511_QHF_FH_JSI9i_3	124.23	89.338			1.037	1.0713	9.1679	4	0	Median	1.375	1.1441	NaN	1	0	Median	0.88944	1.0303	NaN	1	0	Median	1.1682	1.114	NaN	1	0	Median	0.92053	0.93279	NaN	1	0	Median	309190000	154090000	155100000	46159000	18068000	28091000	61631000	29764000	31867000	81904000	36275000	45629000	119500000	69983000	49516000	21531	16	20382	132488;132489;132490;132491	179691;179692;179693;179694;179695	179693			5	
GVLQTAAER	0	Unmodified	943.50869	0.50869399	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	16.657	16.315	2	3.2209E-05	12903	160511_QHF_FH_JSI12i_3	101.43	64.337			1.2622	1.2915	42.519	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56461	0.65417	NaN	1	0	Median	1.5194	1.4301	NaN	1	0	Median	1.2622	1.2915	NaN	1	0	Median	259200000	124780000	134420000	0	0	0	69559000	38741000	30818000	122350000	51711000	70641000	67292000	34331000	32962000	21532	3736	20383	132492;132493;132494;132495	179696;179697;179698	179698			3	
GVLQTAAERGELTDNLVAMAPAAGYHVWLWAVEAFAK	1	Unmodified	3955.0091	0.009078489	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.307	93.587	4	1.7098E-53	54935	160513_QHF_FH_JSI10Kac_6	184.78	164.75			1.0866	1.2668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0866	1.2668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194660000	58576000	136090000	0	0	0	194660000	58576000	136090000	0	0	0	0	0	0	21533	3736	20384	132496	179699	179699			1	
GVLQVENILSLER	0	Unmodified	1468.8249	0.82494275	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.654	90.588	2	0.043385	78541	160511_QHF_FH_JSI12i_3	51.841	31.537			1.1455	1.0757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1455	1.0757	NaN	1	0	Median	32170000	14484000	17686000	0	0	0	0	0	0	0	0	0	32170000	14484000	17686000	21534	4659	20385	132497	179700	179700			0	
GVLSAFNFGTVPSNN	0	Unmodified	1522.7416	0.74160705	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			90.908	90.849	2	0.00035425	82433	160511_QHF_FH_JSI10i_1	96.113	84.067			1.0846	1.2468	24.211	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0846	1.2468	24.211	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36062000	19225000	16838000	0	0	0	36062000	19225000	16838000	0	0	0	0	0	0	21535	287	20386	132498;132499	179701;179702	179701			2	
GVLSQAMVMCASSPEK	1	Unmodified	1693.7837	0.78374792	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	59.649	58.679	2;3	5.0639E-30	52067	160511_QHF_FH_JSI11i_3	189.3	174.88			1.0887	0.91903	22.325	5	1	Median	1.1132	0.91903	NaN	1	0	Median	0.94035	1.0925	30.912	2	1	Median	0.82308	0.75923	NaN	1	0	Median	1.0887	1.088	NaN	1	0	Median	215500000	107390000	108110000	21901000	10396000	11505000	60666000	29296000	31371000	90357000	50207000	40150000	42578000	17490000	25088000	21536	2323	20387	132500;132501;132502;132503;132504;132505;132506	179703;179704;179705;179706;179707;179708;179709;179710;179711;179712;179713	179704			10	
GVLSTHQNIR	0	Unmodified	1123.6098	0.60980502	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			16.265	15.233	2;3	0.00031588	12117	160511_QHF_FH_JSI9i_3	78.334	69.802			1.4332	1.1794	14.488	4	0	Linear	1.5465	1.2609	9.8777	2	0	Median	1.2885	1.4944	15.599	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149310000	66689000	82621000	84766000	36122000	48644000	64544000	30567000	33977000	0	0	0	0	0	0	21537	2834	20388	132507;132508;132509;132510	179714;179715;179716;179717	179717			4	
GVLSYLEPR	0	Unmodified	1032.5604	0.56039521	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.587	59.453	2	0.00049206	52749	160511_QHF_FH_JSI11i_3	89.698	55.96			1.2556	1.2227	2.4088	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3004	1.2437	NaN	1	1	Median	1.2124	1.2021	NaN	1	1	Median	211110000	91636000	119470000	0	0	0	0	0	0	80991000	36341000	44650000	130120000	55295000	74821000	21538	3146	20389	132511;132512	179718;179719	179718			2	
GVLTGPEYEALDALPDAER	0	Unmodified	2014.9848	0.98475045	463	O60936	NOL3	Nucleolar protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		83.828	83.681	2	1.508E-13	75982	160511_QHF_FH_JSI10i_1	142.38	130.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8141100	8141100	0	0	0	0	8141100	8141100	0	0	0	0	0	0	0	21539	463	20390	132513;132514	179720;179721	179721			2	
GVLTGPEYEALDALPDAERR	0	Unmodified	2171.0859	0.08586148	463	O60936	NOL3	Nucleolar protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		75.757	75.757	3	1.4814E-14	67535	160511_QHF_FH_JSI11i_3	140.28	125.35			0.56473	0.51896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56473	0.51896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139730000	80082000	59643000	0	0	0	0	0	0	139730000	80082000	59643000	0	0	0	21540	463	20391	132515;132516	179722;179723;179724	179723			3	
GVLTQFR	0	Unmodified	819.46029	0.46028724	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				34.447	33.016	2	0.035999	26958	160511_QHF_FH_JSI9i_3	49.358	1.5099			1.3401	1.0665	NaN	1	0	Median	1.3401	1.0665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52141000	23892000	28249000	52141000	23892000	28249000	0	0	0	0	0	0	0	0	0	21541	4582	20392	132517	179725	179725			1	
GVLTTEK	1	Unmodified	746.41742	0.41741937	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	11.654	11.126	2	0.012734	8845	160511_QHF_FH_JSI9i_2	68.915	53.476			0.88987	0.92561	13.829	4	0	Median	0.89594	0.75758	NaN	1	0	Median	0.7064	0.86868	NaN	1	0	Median	1.0211	1.0298	NaN	1	0	Median	0.88383	0.98626	NaN	1	0	Median	393830000	215700000	178130000	90854000	40942000	49912000	82613000	46120000	36493000	112740000	67064000	45679000	107620000	61577000	46043000	21542	4717	20393	132518;132519;132520;132521	179726;179727;179728;179729	179727			4	
GVLVFLEQALIQYALR	0	Unmodified	1832.056	0.056005322	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.4	1.65				1					7	3	2	3		101.34	93.269	2;3	8.9665E-160	56233	160513_QHF_FH_JSI10Kac_6	345.94	313.41			0.93748	0.99791	6.1079	5	1	Median	1.1799	1.0241	3.0748	2	1	Median	0.79713	0.95219	6.6326	2	0	Median	0.93748	0.9178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1100200000	541810000	558350000	524040000	242770000	281270000	523700000	284560000	239140000	52421000	14481000	37939000	0	0	0	21543	1667	20394	132522;132523;132524;132525;132526;132527;132528;132529	179730;179731;179732;179733;179734;179735;179736;179737;179738;179739;179740	179740			11	
GVLVVGIGSGTK	1	Unmodified	1085.6445	0.64445919	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	3.06			1			1	4	6	3	3	5	3	4	60.8	51.332	2	6.0433E-12	27135	160513_QHF_FH_JSI9Kac_6	120.09	101.65			0.94297	1.0441	30.979	13	3	Median	0.91983	0.78387	40.864	3	0	Median	0.88212	1.0206	17.687	4	3	Median	0.9614	0.95257	13.759	3	0	Plateau	1.5022	1.6431	33.219	3	0	Median	194020000	89270000	104750000	40601000	19151000	21451000	40357000	20571000	19787000	54135000	25997000	28138000	58929000	23552000	35377000	21544	3798	20395	132530;132531;132532;132533;132534;132535;132536;132537;132538;132539;132540;132541;132542;132543;132544	179741;179742;179743;179744;179745;179746;179747;179748;179749;179750;179751;179752;179753;179754;179755;179756;179757;179758;179759;179760	179758			20	
GVMGGQSAGPQHTEAETIQK	1	Unmodified	2024.9586	0.95855248	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.09	2	5	6				1			2	3	6	3	26.823	25.613	2;3	8.6334E-44	21154	160511_QHF_FH_JSI12i_3	208.86	186.7			0.97439	0.97621	15.529	12	3	Median	1.0615	0.91948	14.79	2	2	Median	0.95443	1.1806	18.621	3	1	Median	0.99478	0.96606	9.2518	5	0	Median	0.97664	1.0489	29.821	2	0	Median	1214200000	646250000	567940000	213510000	98905000	114610000	206490000	124400000	82096000	470330000	243000000	227330000	323860000	179960000	143910000	21545	446	20396	132545;132546;132547;132548;132549;132550;132551;132552;132553;132554;132555;132556;132557;132558	179761;179762;179763;179764;179765;179766;179767;179768;179769;179770;179771;179772;179773;179774;179775;179776;179777;179778;179779	179777			18	
GVMGGQSAGPQHTEAETIQK	1	Oxidation (M)	2040.9535	0.9534671	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	23.101	23.099	3	2.6581E-14	21181	160511_QHF_FH_JSI12i_3	137.61	128.05			1.225	1.2022	20.482	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5094	1.4353	NaN	1	1	Median	0.98011	1.0066	0.044339	2	1	Median	131770000	54593000	77172000	0	0	0	0	0	0	56392000	19025000	37367000	75373000	35568000	39805000	21546	446	20396	132559;132560;132561	179780;179781;179782;179783;179784	179784		177	5	
GVMINKDVTHPR	1	Acetyl (K)	1407.7293	0.72926823	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.685							1	2	6	1	4	3	1	46.233	36.615	2;3	1.2355E-18	19973	160513_QHF_FH_JSI11Kac_6	149.31	131.87			0.63175	0.68761	71.125	7	1	Median	1.1541	0.99089	NaN	1	0	Median	1.0397	1.2167	6.0926	2	0	Median	0.39051	0.37544	43.826	3	1	Median	0.63175	0.68761	NaN	1	0	Median	247780000	159840000	87941000	12559000	6751400	5807300	66974000	29563000	37410000	146260000	109700000	36550000	21990000	13817000	8173000	21547	1655	20397	132562;132563;132564;132565;132566;132567;132568;132569;132570	179785;179786;179787;179788;179789;179790;179791;179792;179793;179794	179787	1675		10	
GVMINKDVTHPR	1	Acetyl (K);Oxidation (M)	1423.7242	0.72418285	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15.3	0.471								2	1			1	2	41.673	31.848	3	0.00025882	17000	160513_QHF_FH_JSI12Kac_5	78.903	58.062			0.13429	0.14241	129.77	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35809	0.35649	NaN	1	0	Median	0.050357	0.056886	NaN	1	1	Median	31952000	27098000	4854300	0	0	0	0	0	0	21882000	17235000	4646900	10071000	9863400	207330	21548	1655	20397	132571;132572;132573	179795;179796;179797	179796	1675	1331	3	
GVMISHSNIIAGITGMAER	0	Unmodified	1955.9921	0.99210121	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.25	5.63			3						1	1	3			80.335	77.568	3	6.9991E-05	66728	160511_QHF_FH_JSI10i_3	58.848	48.472			0.52476	0.61506	61.276	3	1	Median	1.5312	1.2782	NaN	1	1	Median	0.41639	0.48242	34.352	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283640000	183430000	100210000	13759000	2917600	10841000	269880000	180520000	89370000	0	0	0	0	0	0	21549	707	20398	132574;132575;132576;132577	179798;179799;179800;179801;179802	179799			5	
GVMLAVDAVIAELK	1	Unmodified	1427.8058	0.80578722	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.49		8	8						9	6	6	6	7	100.08	97.099	2;3	3.2811E-37	49486	160513_QHF_FH_JSI11Kac_6	184.88	160.09			0.96281	0.9747	18.629	22	2	Median	0.97073	0.80839	14.039	5	1	Median	0.74122	0.90919	11.366	5	0	Median	1.0587	1.0338	13.586	6	0	Median	0.96411	1.0173	25.161	6	1	Median	10081000000	4868500000	5212900000	1641200000	801120000	840080000	1873300000	1117300000	755930000	3793800000	1737000000	2056800000	2773100000	1213000000	1560100000	21550	980	20399	132578;132579;132580;132581;132582;132583;132584;132585;132586;132587;132588;132589;132590;132591;132592;132593;132594;132595;132596;132597;132598;132599;132600;132601;132602	179803;179804;179805;179806;179807;179808;179809;179810;179811;179812;179813;179814;179815;179816;179817;179818;179819;179820;179821;179822;179823;179824;179825;179826;179827;179828;179829;179830;179831;179832;179833;179834;179835;179836;179837;179838;179839;179840;179841;179842;179843;179844;179845;179846	179813			44	
GVMLAVDAVIAELK	1	Oxidation (M)	1443.8007	0.80070184	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	92.237	82.794	2	8.3084E-06	44694	160513_QHF_FH_JSI12Kac_6	109.24	83.577			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21551	980	20399	132603	179847	179847		551	1	
GVMLAVDAVIAELKK	2	Oxidation (M)	1571.8957	0.89566485	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.66		2	21						4	6	10	5	6	94.582	93.171	2;3	3.7915E-35	79788	160511_QHF_FH_JSI10i_3	158.81	149.53			0.67181	0.68334	26.066	11	11	Median	0.87464	0.77927	30.426	2	2	Median	0.57604	0.66783	31.331	4	4	Linear	0.73818	0.70678	4.7688	2	2	Median	0.67181	0.68524	17.024	3	3	Median	793290000	432350000	360940000	84260000	42921000	41338000	237130000	148000000	89135000	110970000	57580000	53394000	360920000	183850000	177070000	21552	980	20400	132604;132605;132606;132607;132608;132609;132610;132611;132612;132613;132614;132615;132616;132617;132618;132619;132620;132621;132622;132623;132624;132625;132626;132627;132628;132629;132630	179848;179849;179850;179851;179852;179853;179854;179855;179856;179857;179858;179859;179860;179861;179862;179863;179864;179865;179866;179867;179868;179869;179870;179871;179872;179873;179874;179875;179876;179877;179878	179858		551	31	
GVMLAVDAVIAELKK	2	Unmodified	1555.9008	0.90075023	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.63	6.43		5	12						10	8	6	8	5	97.984	94.566	2;3	7.1292E-83	88151	160511_QHF_FH_JSI12i_3	216.06	190.01			0.80983	0.85947	29.783	17	17	Median	0.93143	0.78772	26.201	5	5	Median	0.73782	0.90186	10.877	4	4	Median	0.80983	0.76459	39.444	5	5	Median	1.1501	1.144	26.464	3	3	Plateau	26234000000	12948000000	13286000000	2173300000	993350000	1179900000	5917800000	2849500000	3068300000	6565600000	3519100000	3046500000	11578000000	5586400000	5991200000	21553	980	20400	132631;132632;132633;132634;132635;132636;132637;132638;132639;132640;132641;132642;132643;132644;132645;132646;132647;132648;132649;132650;132651;132652;132653;132654;132655;132656;132657	179879;179880;179881;179882;179883;179884;179885;179886;179887;179888;179889;179890;179891;179892;179893;179894;179895;179896;179897;179898;179899;179900;179901;179902;179903;179904;179905	179901			27	
GVMTTGSDIGFSVIQAHDVQNPLHFGEMK	1	Unmodified	3114.4903	0.4902901	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	93.978	93.976	3;4	2.057E-43	81424	160511_QHF_FH_JSI12i_3	175.9	169.74			0.86394	0.87919	14.917	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90715	0.86059	25.468	2	0	Median	0.86394	0.87919	3.7866	2	0	Median	514810000	256120000	258690000	0	0	0	0	0	0	210480000	108400000	102070000	304330000	147710000	156620000	21554	3734	20401	132658;132659;132660;132661	179906;179907;179908;179909;179910;179911;179912;179913;179914	179911			9	
GVMTTGSDIGFSVIQAHDVQNPLHFGEMK	1	Oxidation (M)	3130.4852	0.48520472	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	88.569	88.459	4	3.903E-19	76494	160511_QHF_FH_JSI12i_3	102.27	99.953			0.89529	0.90805	5.8205	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89529	0.90805	5.8205	2	0	Median	115570000	67121000	48446000	0	0	0	0	0	0	0	0	0	115570000	67121000	48446000	21555	3734	20401	132662;132663	179915;179916;179917	179915		2284;2285	3	
GVNFYGPK	1	Unmodified	880.4443	0.44430282	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0			By MS/MS		6.33	6.13		2						1				3		30.859	30.479	2	0.003294	25828	160511_QHF_FH_JSI11i_2	79.597	66.609			0.69267	0.69055	26.879	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69267	0.69055	26.879	2	2	Median	NaN	NaN	NaN	0	0	Median	126740000	62573000	64168000	0	0	0	0	0	0	126740000	62573000	64168000	0	0	0	21556	2962	20402	132664;132665;132666	179918;179919;179920	179919			3	
GVNIGGAGSYIYEK	1	Unmodified	1426.7092	0.70924429	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.72	2	7	2					2		5	3	4	1	56.793	55.064	2	3.4689E-06	48601	160511_QHF_FH_JSI10i_2	128.85	113.7			1.1131	1.0396	26.86	11	9	Median	1.2795	1.0794	39.866	4	3	Median	0.83846	1.0179	33.056	3	3	Median	1.1131	1.0262	10.298	3	3	Median	0.93555	1.0396	NaN	1	0	Median	1748400000	853400000	895020000	301780000	129250000	172530000	525520000	249970000	275550000	711640000	372300000	339330000	209470000	101870000	107600000	21557	1789	20403	132667;132668;132669;132670;132671;132672;132673;132674;132675;132676;132677;132678;132679	179921;179922;179923;179924;179925;179926;179927;179928;179929;179930;179931;179932;179933;179934	179934			14	
GVNLDPLGK	1	Unmodified	911.50763	0.50763136	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	3	1	52.845	50.093	2	0.00013513	45308	160511_QHF_FH_JSI11i_1	90.657	73.881			1.012	0.99371	17.544	5	1	Median	1.1318	0.9257	NaN	1	0	Median	0.84238	0.99371	NaN	1	0	Median	1.1055	1.0832	32.523	2	1	Median	1.012	1.0225	NaN	1	0	Median	513430000	261640000	251790000	104950000	50341000	54609000	134130000	70413000	63713000	160080000	82304000	77779000	114270000	58579000	55689000	21558	1580	20404	132680;132681;132682;132683;132684;132685	179935;179936;179937;179938;179939;179940	179935			6	
GVNLPGAAVDLPAVSEK	1	Unmodified	1635.8832	0.88318591	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.67	8	8	6			4	5	2		5	9	9	10	77.866	74.306	2;3	1.4147E-15	67822	160511_QHF_FH_JSI10i_2	160.84	151.41			0.90397	0.94622	23.874	32	5	Median	1.1551	0.97549	6.6541	5	1	Median	0.84168	0.96573	17.624	9	1	Median	0.9528	0.93225	25.069	9	2	Median	0.85169	0.92784	34.017	9	1	Median	25400000000	12474000000	12926000000	5112900000	2120000000	2992900000	7012500000	3688500000	3324100000	6839100000	3245900000	3593200000	6435400000	3419300000	3016100000	21559	1055	20405	132686;132687;132688;132689;132690;132691;132692;132693;132694;132695;132696;132697;132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711;132712;132713;132714;132715;132716;132717;132718	179941;179942;179943;179944;179945;179946;179947;179948;179949;179950;179951;179952;179953;179954;179955;179956;179957;179958;179959;179960;179961;179962;179963;179964;179965;179966;179967;179968;179969;179970;179971;179972;179973;179974;179975;179976;179977;179978;179979;179980;179981;179982;179983;179984;179985;179986;179987;179988;179989;179990;179991;179992;179993;179994;179995;179996;179997;179998;179999;180000;180001;180002;180003;180004;180005;180006;180007;180008;180009;180010;180011;180012;180013;180014;180015;180016;180017;180018;180019;180020;180021	180017			81	
GVNLVINYDFPTSSVEYIHR	0	Unmodified	2322.1644	0.16444615	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.805	89.717	3	9.867E-06	77853	160511_QHF_FH_JSI12i_3	70.414	61.594			1.0574	1.0727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0574	1.0727	NaN	1	0	Median	28937000	14540000	14397000	0	0	0	0	0	0	0	0	0	28937000	14540000	14397000	21560	5530	20406	132719	180022;180023	180023			2	
GVNPSLVSWLTTMMGLR	0	Unmodified	1860.959	0.95901017	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	99.977	91.543	2;3	7.1589E-97	55258	160513_QHF_FH_JSI10Kac_6	285.52	269.76			1.0771	1.0234	8.0101	8	0	Median	1.2038	1.0345	6.6026	2	0	Median	0.85458	1.0167	1.707	2	0	Median	1.0771	1.0126	0.72701	2	0	Median	1.1095	1.1625	12.045	2	0	Median	4421700000	2238600000	2183100000	730140000	347380000	382760000	2046400000	1103700000	942670000	1452400000	707390000	745050000	192720000	80113000	112600000	21561	1585	20407	132720;132721;132722;132723;132724;132725;132726;132727	180024;180025;180026;180027;180028;180029;180030;180031;180032;180033	180031			10	
GVNPSLVSWLTTMMGLR	0	2 Oxidation (M)	1892.9488	0.94883941	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	2	0	By MS/MS	By MS/MS			16	0									2	1	1			88.718	81.524	3	2.3625E-05	46707	160513_QHF_FH_JSI10Kac_6	83.751	73.694			0.97482	0.98928	0.59871	2	0	Median	1.1537	0.99347	NaN	1	0	Median	0.82366	0.9851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207280000	113860000	93419000	52036000	26593000	25442000	155250000	87271000	67977000	0	0	0	0	0	0	21562	1585	20407	132728;132729	180034;180035	180035		1243;1244	2	
GVNPSLVSWLTTMMGLR	0	Oxidation (M)	1876.9539	0.95392479	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			96.429	90.709	2	5.4991E-06	52531	160513_QHF_FH_JSI10Kac_6	155.66	133.79			0.53862	0.61836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53862	0.61836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111080000	75827000	35258000	0	0	0	111080000	75827000	35258000	0	0	0	0	0	0	21563	1585	20407	132730	180036	180036		1243;1244	1	
GVNSYPSLFIFR	0	Unmodified	1398.7296	0.7295858	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		90.209	87.618	2	2.2746E-08	44636	160513_QHF_FH_JSI10Kac_6	115.7	102.35			1.0556	1.2561	21.271	3	0	Plateau	1.2516	1.0027	NaN	1	0	Median	0.87077	1.0155	30.064	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	257180000	87488000	169690000	24507000	10144000	14364000	232670000	77344000	155330000	0	0	0	0	0	0	21564	3439	20408	132731;132732;132733;132734	180037;180038;180039;180040;180041	180041			5	
GVNTDSGSVCR	0	Unmodified	1150.5037	0.50368497	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		9.8903	9.7089	2	2.8658E-06	7430	160511_QHF_FH_JSI11i_1	112.11	75.712			1.0402	1.092	16.058	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0591	1.2233	NaN	1	0	Median	1.0217	0.97482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52658000	29585000	23074000	0	0	0	27214000	15167000	12046000	25444000	14417000	11027000	0	0	0	21565	1022	20409	132735;132736	180042	180042			1	
GVNTFSPEGR	0	Unmodified	1062.5094	0.50942227	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	5.98	4	4	4			1	3	3		4	5	5	5	26.671	22.841	2	7.112E-44	14373	160513_QHF_FH_JSI11Kac_4	204.36	124.89			1.0048	0.97201	11.525	19	2	Median	1.2101	0.98625	7.856	4	0	Median	0.809	0.9605	14.615	5	1	Median	1.0167	0.99789	10.922	5	1	Median	0.92556	1.0291	13.831	5	0	Median	5157000000	2585200000	2571800000	1036500000	467600000	568930000	1249700000	695970000	553710000	1512100000	723680000	788450000	1358700000	697990000	660690000	21566	1300	20410	132737;132738;132739;132740;132741;132742;132743;132744;132745;132746;132747;132748;132749;132750;132751;132752;132753;132754;132755	180043;180044;180045;180046;180047;180048;180049;180050;180051;180052;180053;180054;180055;180056;180057;180058;180059;180060;180061;180062;180063;180064;180065;180066;180067;180068;180069;180070;180071;180072	180057			30	
GVNTGAVGSYIYDRDPEGK	1	Unmodified	1996.949	0.94903365	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.68	1	4	5					1		3	3	4	1	52.66	50.971	2;3	1.3565E-12	45060	160511_QHF_FH_JSI11i_3	145.43	124.96			0.94236	0.92471	23.772	9	2	Median	0.89397	0.76527	15.036	2	1	Median	0.80699	0.93915	9.4738	2	0	Median	0.95413	0.9317	33.336	4	1	Median	0.94236	0.97357	NaN	1	0	Median	1629100000	834380000	794680000	392030000	197730000	194310000	334150000	193670000	140490000	697120000	341120000	356000000	205760000	101860000	103890000	21567	1789	20411	132756;132757;132758;132759;132760;132761;132762;132763;132764;132765;132766	180073;180074;180075;180076;180077;180078;180079;180080;180081;180082;180083;180084;180085;180086	180076			14	
GVNTGGREPNTMVEK	1	Unmodified	1587.7675	0.76750423	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		19.357	19.357	3	0.0036099	16217	160511_QHF_FH_JSI11i_3	56.599	45.655			1.6192	1.4888	49.153	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6192	1.4888	49.153	2	2	Median	NaN	NaN	NaN	0	0	Median	96173000	36762000	59410000	0	0	0	0	0	0	96173000	36762000	59410000	0	0	0	21568	2899	20412	132767;132768	180087;180088	180087			2	
GVNTVFHCASPPPSSNNK	1	Unmodified	1911.8897	0.88974463	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		31.359	30.431	3	5.985E-09	26458	160511_QHF_FH_JSI11i_3	131.67	126.24			0.68749	0.66711	40.541	3	0	Plateau	1.7811	1.4459	NaN	1	0	Median	0.79073	0.91225	NaN	1	0	Median	0.68749	0.64441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153120000	76995000	76120000	26430000	8379000	18051000	52674000	29341000	23332000	74012000	39275000	34737000	0	0	0	21569	2701	20413	132769;132770;132771	180089;180090;180091;180092;180093;180094;180095	180090			7	
GVNVSALSR	0	Unmodified	901.49813	0.49812931	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.59		1	5				1	2		2	3	2	2	32.373	28.197	2	0.0014093	23828	160511_QHF_FH_JSI12i_2	77.732	47.014			1.202	1.0933	17.878	8	1	Median	1.3969	1.1651	5.0808	2	0	Median	1.0732	1.2674	35.706	2	0	Median	1.2606	1.2017	17.276	2	0	Median	0.95422	1.0012	4.9439	2	1	Median	552180000	256240000	295930000	35385000	14412000	20973000	63438000	31587000	31851000	168500000	80364000	88139000	284850000	129880000	154970000	21570	1479	20414	132772;132773;132774;132775;132776;132777;132778;132779;132780	180096;180097;180098;180099;180100;180101;180102	180096			7	
GVNWAAFHPTMPLIVSGADDR	0	Unmodified	2253.1001	0.10007176	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.03		1	6						3	4	3	1	2	93.393	90.762	3	2.0407E-141	78263	160511_QHF_FH_JSI9i_3	241.68	222.14			1.073	1.003	37.398	10	4	Median	1.2136	1.0208	23.757	4	3	Median	0.87029	1.0198	42.295	3	0	Plateau	1.0151	0.95862	NaN	1	0	Median	1.4594	1.5163	72.242	2	1	Median	882270000	398900000	483370000	174250000	65888000	108370000	364440000	173360000	191080000	192030000	91959000	100070000	151550000	67690000	83863000	21571	1805	20415	132781;132782;132783;132784;132785;132786;132787;132788;132789;132790	180103;180104;180105;180106;180107;180108;180109;180110;180111;180112;180113;180114;180115;180116;180117;180118;180119;180120;180121;180122	180111			19	
GVNWAAFHPTMPLIVSGADDR	0	Oxidation (M)	2269.095	0.094986378	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		81.1	80.213	3	4.8988E-05	67213	160511_QHF_FH_JSI10i_3	56.529	49.68			0.82972	0.92876	6.6406	3	2	Plateau	1.0411	0.83533	NaN	1	1	Median	0.81619	0.92876	NaN	1	0	Median	1.0415	0.94398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117550000	62587000	54964000	48237000	23322000	24915000	36070000	20368000	15702000	33245000	18898000	14347000	0	0	0	21572	1805	20415	132791;132792;132793	180123;180124;180125;180126	180124		1494	4	
GVPAFFR	0	Unmodified	792.42826	0.42825883	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	53.544	52.703	2	0.0032988	46509	160511_QHF_FH_JSI11i_3	105.42	76.08			0.91643	0.88713	9.1016	4	0	Median	1.1501	0.9344	NaN	1	0	Median	0.72847	0.84226	NaN	1	0	Median	1.0507	0.97608	NaN	1	0	Median	0.79936	0.80134	NaN	1	0	Median	481160000	247130000	234030000	184760000	89202000	95555000	116150000	62941000	53209000	89491000	47056000	42435000	90767000	47935000	42832000	21573	4628	20416	132794;132795;132796;132797	180127;180128;180129;180130;180131;180132	180127			6	
GVPAGNSDTEGGQPGR	0	Unmodified	1497.6808	0.68079771	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	12.588	12.27	2	0.00086949	10089	160511_QHF_FH_JSI12i_1	63.537	38.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21574	5380	20417	132798;132799	180133;180134	180133			2	
GVPAGNSDTEGGQPGRK	1	Unmodified	1625.7758	0.77576073	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.1	3	4	3				3			1	5	3	4	10.846	8.2953	2;3	1.3899E-07	6982	160511_QHF_FH_JSI11i_3	130.01	119.63			0.90501	0.93731	20.913	11	3	Median	1.1982	1.0157	NaN	1	0	Median	0.97495	1.1772	12.798	4	2	Median	0.8359	0.78189	12.921	3	0	Plateau	0.66137	0.68995	9.2755	3	1	Plateau	427510000	240750000	186770000	29138000	13698000	15439000	230590000	124380000	106210000	96055000	55374000	40681000	71730000	47297000	24433000	21575	5380	20418	132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812	180135;180136;180137;180138;180139;180140;180141;180142;180143;180144;180145;180146;180147;180148	180136			14	
GVPESLASGEGAGAGLPALDLAK	1	Unmodified	2079.0848	0.084798847	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	86.764	86.304	2;3	2.4851E-15	78282	160511_QHF_FH_JSI10i_1	125.5	117.63			0.61836	0.62896	14.554	5	2	Median	0.91994	0.76723	15.425	2	1	Median	0.56006	0.62896	NaN	1	1	Median	0.61836	0.60068	NaN	1	0	Median	0.58676	0.61165	NaN	1	0	Median	186850000	102150000	84692000	58901000	31040000	27861000	40169000	23338000	16831000	52348000	30367000	21981000	35428000	17408000	18020000	21576	739	20419	132813;132814;132815;132816;132817;132818;132819;132820	180149;180150;180151;180152;180153;180154;180155;180156;180157	180154			8	
GVPFEVK	1	Unmodified	774.42759	0.42759012	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.03	4	4					3	1		2	3	3	4	43.263	39.262	2	0.011468	33655	160511_QHF_FH_JSI12i_2	70.912	16.387			0.8819	0.91425	30.093	12	1	Median	1.1169	0.95105	8.1461	2	0	Median	0.85815	1.0194	64.305	3	1	Median	0.8955	0.87287	17.395	3	0	Median	0.86789	0.91111	7.1943	4	0	Median	1027500000	540740000	486720000	171810000	97866000	73940000	237990000	131190000	106790000	331370000	167760000	163600000	286310000	143920000	142390000	21577	2323	20420	132821;132822;132823;132824;132825;132826;132827;132828;132829;132830;132831;132832	180158;180159;180160;180161;180162;180163;180164;180165;180166;180167;180168;180169;180170;180171;180172	180161			15	
GVPFEVKGK	2	Acetyl (K)	1001.5546	0.55458155	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	56.526	45.764	2	0.0058635	25359	160513_QHF_FH_JSI10Kac_4	71.692	45.09			0.34856	0.35775	98.029	4	1	Median	NaN	NaN	NaN	0	0	Median	1.4988	1.7637	NaN	1	0	Median	0.2305	0.22446	20.59	2	1	Median	0.46248	0.49292	NaN	1	0	Median	39050000	28643000	10407000	0	0	0	5868600	2210200	3658400	28028000	22471000	5557000	5153400	3961800	1191600	21578	2323	20421	132833;132834;132835;132836	180173;180174;180175	180173	2416		3	
GVPGSAVLLFEVELVSREDGLPTGYLFVWHK	1	Unmodified	3413.8024	0.8023634	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.461	92.74	4	2.257E-16	54230	160513_QHF_FH_JSI10Kac_6	133.28	118.12			0.78443	0.94065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78443	0.94065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	307910000	120860000	187050000	0	0	0	307910000	120860000	187050000	0	0	0	0	0	0	21579	3973	20422	132837	180176	180176			1	
GVPHPEDDHSQVEGPESLR	0	Unmodified	2083.9559	0.95590994	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	33.871	33.455	3;4	1.2255E-06	29131	160511_QHF_FH_JSI11i_3	95.094	89.666			0.96093	0.98482	12.129	6	1	Median	1.4251	1.2049	NaN	1	0	Median	0.94206	1.1668	NaN	1	0	Median	0.98018	0.98685	4.0341	3	1	Plateau	0.90444	0.90515	NaN	1	0	Median	679560000	341120000	338450000	52646000	18487000	34159000	78755000	45314000	33442000	425660000	210160000	215500000	122500000	67154000	55344000	21580	3111	20423	132838;132839;132840;132841;132842;132843	180177;180178;180179;180180;180181;180182;180183	180178			7	
GVPLQFDINSVGK	1	Unmodified	1372.7351	0.73506511	4208	Q96QD9	FYTTD1	UAP56-interacting factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	75.325	74.972	2	0.016366	67943	160511_QHF_FH_JSI10i_1	51.252	44.52			0.58684	0.57581	44.636	3	2	Median	NaN	NaN	NaN	0	0	Median	0.83701	0.95024	NaN	1	1	Median	0.58684	0.57581	NaN	1	0	Median	0.38164	0.39007	NaN	1	1	Median	100880000	67350000	33526000	0	0	0	23830000	13665000	10165000	44165000	31296000	12869000	32881000	22389000	10491000	21581	4208	20424	132844;132845;132846	180184;180185;180186	180186			3	
GVPLVYEAFNWR	0	Unmodified	1449.7405	0.74048484	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	96.848	96.864	2	7.963E-05	83850	160511_QHF_FH_JSI12i_3	105.4	88.371			0.87018	0.84717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87018	0.84717	NaN	1	1	Median	43938000	20870000	23068000	0	0	0	0	0	0	0	0	0	43938000	20870000	23068000	21582	2768	20425	132847;132848	180187;180188	180187			2	
GVPQQIEVAR	0	Unmodified	1095.6037	0.60365701	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				34.944	33.7	2	0.00010658	29609	160511_QHF_FH_JSI9i_1	99.802	83.599			1.4136	1.156	NaN	1	1	Median	1.4136	1.156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124390000	44494000	79901000	124390000	44494000	79901000	0	0	0	0	0	0	0	0	0	21583	4118	20426	132849	180189	180189			1	
GVPTGFILPIR	0	Unmodified	1168.6968	0.69682911	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.48	4	4	4					2	4	4	6	3	5	85.848	82.501	2	1.1507E-09	70299	160511_QHF_FH_JSI9i_3	135.83	106.68			0.93599	0.96057	29.623	18	7	Median	1.2149	1.0136	28.912	4	0	Median	0.75399	0.89759	32.084	6	4	Median	1.0225	1.008	9.7869	3	0	Median	1.0461	1.0883	40.779	5	3	Median	3006600000	1528200000	1478400000	533250000	241050000	292210000	643530000	370510000	273020000	942540000	483020000	459510000	887280000	433640000	453630000	21584	1004	20427	132850;132851;132852;132853;132854;132855;132856;132857;132858;132859;132860;132861;132862;132863;132864;132865;132866;132867	180190;180191;180192;180193;180194;180195;180196;180197;180198;180199;180200;180201;180202;180203;180204;180205;180206;180207;180208;180209;180210;180211;180212;180213;180214;180215;180216;180217;180218;180219	180204			30	
GVPVAEFNTETTPATNR	0	Unmodified	1802.8799	0.87989145	5102	Q9NXA8	SIRT5	NAD-dependent protein deacylase sirtuin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	52.446	51.803	2;3	8.5154E-16	46606	160511_QHF_FH_JSI10i_1	164.48	139.14			0.90273	0.81646	21.042	10	3	Median	1.0618	0.86121	18.009	2	0	Median	0.71077	0.81394	43.056	2	0	Median	0.91805	0.87421	17.824	3	2	Median	0.62	0.66117	19.074	3	1	Plateau	426590000	225610000	200980000	84896000	36025000	48871000	85229000	55097000	30132000	129530000	60763000	68763000	126940000	73722000	53214000	21585	5102	20428	132868;132869;132870;132871;132872;132873;132874;132875;132876;132877;132878	180220;180221;180222;180223;180224;180225;180226;180227;180228;180229	180225			10	
GVPVISVK	1	Unmodified	797.50109	0.50108942	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							2	2	3	2	42.834	42.24	2	0.0061156	37943	160511_QHF_FH_JSI11i_1	63.565	48.344			0.88042	0.91296	20.99	9	0	Median	0.77984	0.66205	7.1334	2	0	Median	0.79537	0.95256	16.757	2	0	Median	1.0745	1.0737	5.4372	3	0	Median	0.82577	0.84914	10.248	2	0	Median	505160000	275410000	229750000	82292000	41151000	41141000	140820000	82524000	58295000	201180000	108940000	92241000	80871000	42800000	38071000	21586	2670	20429	132879;132880;132881;132882;132883;132884;132885;132886;132887	180230;180231;180232;180233;180234;180235;180236;180237;180238	180231			9	
GVPVSEAECTAMGLR	0	Unmodified	1575.7385	0.73851229	2985;3956	Q5VT66;Q969Z3	MARC1;MARC2	Mitochondrial amidoxime-reducing component 1;Mitochondrial amidoxime reducing component 2	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		57.772	57.364	2	0.00036772	51691	160511_QHF_FH_JSI10i_1	76.165	68.784			0.65644	0.70017	3.4413	2	0	Median	NaN	NaN	NaN	0	0	Median	0.58157	0.68334	NaN	1	0	Median	0.74094	0.71742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117010000	73121000	43886000	0	0	0	56308000	32910000	23397000	60700000	40211000	20489000	0	0	0	21587	2985;3956	20430	132888;132889	180239	180239			1	
GVPWNFTFNVK	1	Unmodified	1307.6663	0.66625727	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	88.431	88.357	2	0.00039931	78730	160511_QHF_FH_JSI11i_3	87.913	70.888			1.0774	1.1122	5.5253	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0741	0.99899	NaN	1	1	Median	1.0767	1.0951	2.1942	2	2	Median	235150000	116460000	118690000	0	0	0	0	0	0	43633000	20917000	22717000	191520000	95545000	95972000	21588	988	20431	132890;132891;132892	180240;180241;180242	180240			3	
GVQDIVVGEGTHFLIPWVQK	1	Unmodified	2221.1895	0.18953869	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	3	4	4	99.334	97.435	2;3	1.6228E-118	87994	160511_QHF_FH_JSI12i_3	325.61	288.06			0.93357	0.91086	15.375	13	3	Median	0.92857	0.79767	16.784	3	1	Plateau	0.8529	1.0121	19.485	3	1	Plateau	0.99236	0.93613	19.804	4	1	Median	0.91219	0.91086	12.582	3	0	Median	15732000000	8199100000	7532500000	1161800000	585080000	576700000	2051500000	1109100000	942330000	4726600000	2339000000	2387600000	7791700000	4165900000	3625900000	21589	1424	20432	132893;132894;132895;132896;132897;132898;132899;132900;132901;132902;132903;132904;132905;132906	180243;180244;180245;180246;180247;180248;180249;180250;180251;180252;180253;180254;180255;180256;180257;180258;180259;180260;180261	180257			19	
GVQDIVVGEGTHFLIPWVQKPIIFDCR	1	Unmodified	3122.6375	0.63754668	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.891	87.484	4	2.2818E-70	47143	160513_QHF_FH_JSI12Kac_6	194.77	167.14			1.1036	1.2125	30.392	4	0	Median	1.7496	1.4923	NaN	1	0	Median	0.82212	0.98511	NaN	1	0	Median	0.85919	0.82083	NaN	1	0	Median	1.4176	1.5037	NaN	1	0	Median	1231200000	629960000	601280000	121400000	43541000	77856000	447290000	224740000	222550000	301990000	192710000	109280000	360580000	168980000	191600000	21590	1424	20433	132907;132908;132909;132910	180262;180263;180264;180265;180266;180267	180264			6	
GVQFAPFSTCR	0	Unmodified	1268.5972	0.59719142	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			58.179	56.644	2	0.0125	47344	160511_QHF_FH_JSI10i_3	54.608	43.118			1.0654	1.24	16.768	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0654	1.24	16.768	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39054000	17942000	21112000	0	0	0	39054000	17942000	21112000	0	0	0	0	0	0	21591	93	20434	132911;132912	180268;180269	180269			2	
GVQGFQDYIEK	1	Unmodified	1282.6194	0.61936665	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		55.908	55.126	2	0.00017648	49838	160511_QHF_FH_JSI11i_1	92.538	76.336			0.91892	0.77954	99.455	4	1	Median	0.95742	0.77954	73.311	2	1	Median	0.14703	0.17548	NaN	1	0	Median	1.5008	1.4592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	264900000	147590000	117310000	98152000	46421000	51731000	67723000	52886000	14837000	99024000	48283000	50740000	0	0	0	21592	5147	20435	132913;132914;132915;132916	180270;180271;180272	180270			1	
GVQGIIVVNTEGIPIK	1	Unmodified	1635.956	0.95595693	4891	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	1	2	83.128	82.66	2	1.5211E-07	71417	160511_QHF_FH_JSI12i_2	97.911	74.994			0.96534	0.9767	11.39	4	4	Median	1.0772	0.91289	NaN	1	1	Median	0.89599	1.045	NaN	1	1	Median	0.82704	0.83289	NaN	1	1	Median	1.04	1.0559	NaN	1	1	Median	103030000	54807000	48224000	21918000	11837000	10081000	38149000	19614000	18535000	24704000	13215000	11489000	18261000	10141000	8119500	21593	4891	20436	132917;132918;132919;132920;132921	180273;180274;180275;180276;180277;180278	180273			6	
GVQHPLR	0	Unmodified	805.45587	0.45587056	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			6.1246	5.615	2	0.0017113	3665	160511_QHF_FH_JSI10i_3	117.56	68.801			0.95905	0.94234	8.764	2	0	Median	1.073	0.88571	NaN	1	0	Median	0.85719	1.0026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	610110000	312250000	297860000	324790000	142000000	182790000	285320000	170250000	115070000	0	0	0	0	0	0	21594	4212	20437	132922;132923	180279;180280;180281	180280			3	
GVQILMQAAGLGR	0	Unmodified	1312.7285	0.72853995	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				76.956	75.518	2	0.0061385	62165	160511_QHF_FH_JSI9i_3	77.662	54.234			1.9636	1.7021	NaN	1	1	Median	1.9636	1.7021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5469600	1535500	3934100	5469600	1535500	3934100	0	0	0	0	0	0	0	0	0	21595	1841	20438	132924	180282	180282			1	
GVQKILQDYK	2	Acetyl (K)	1232.6765	0.6764876	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	62.178	51.359	2	0.00162	28052	160513_QHF_FH_JSI10Kac_4	84.17	66.306			0.92196	0.90467	39.407	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1664	1.3581	NaN	1	0	Median	0.92196	0.90467	NaN	1	1	Median	0.57003	0.61757	NaN	1	0	Median	19816000	9957000	9859400	0	0	0	10543000	4720600	5822800	2507200	1485300	1022000	6765800	3751200	3014600	21596	851	20439	132925;132926;132927	180283;180284;180285	180283	509		3	
GVQKLVLTSR	1	Acetyl (K)	1141.6819	0.68190733	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15	0								3			1	1	1	57.493	46.786	2	0.052552	25657	160513_QHF_FH_JSI11Kac_5	60.167	36.399			0.34759	0.36943	88.085	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1252	1.3233	NaN	1	0	Median	0.24571	0.2442	NaN	1	0	Median	0.34759	0.36943	NaN	1	0	Median	21194000	16321000	4873100	0	0	0	2891700	1285400	1606200	16195000	13435000	2759400	2107700	1600200	507500	21597	1650	20440	132928;132929;132930	180286	180286			0	
GVQLQTHPNVDK	1	Unmodified	1334.6943	0.69426293	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.27		9	5					4		5	3	5	5	24.772	22.175	2;3	2.6112E-42	18340	160511_QHF_FH_JSI12i_3	237.36	195.96			0.96295	0.93159	21.343	18	5	Median	1.0895	0.93481	28.121	5	3	Median	0.75542	0.91278	18.78	3	0	Plateau	0.96594	0.92837	18.397	5	1	Median	0.85154	0.87819	22.654	5	1	Median	1921000000	968850000	952160000	304950000	151450000	153500000	175060000	109360000	65698000	754630000	376930000	377700000	686370000	331120000	355250000	21598	1620	20441	132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944;132945;132946;132947;132948	180287;180288;180289;180290;180291;180292;180293;180294;180295;180296;180297;180298;180299;180300;180301;180302;180303;180304;180305;180306;180307;180308;180309;180310;180311;180312;180313;180314	180314			28	
GVQLQTHPNVDKK	2	Unmodified	1462.7892	0.78922595	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			5								3	2		17.6	16.793	2;3;4	1.0159E-12	14005	160511_QHF_FH_JSI11i_3	128.17	101.07			0.86858	0.91997	10.394	4	2	Median	NaN	NaN	NaN	0	0	Median	0.82288	0.96651	12.129	3	2	Median	0.93358	0.87568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	444920000	270190000	174730000	0	0	0	283980000	179740000	104240000	160930000	90443000	70489000	0	0	0	21599	1620	20442	132949;132950;132951;132952;132953	180315;180316;180317;180318;180319	180316			5	
GVQPPNFSWVLPGR	0	Unmodified	1552.815	0.81504677	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		90.861	89.963	2	0.015152	73785	160511_QHF_FH_JSI9i_3	61.815	46.55			1.1441	0.83269	15.548	3	3	Plateau	1.2441	1.0535	NaN	1	1	Median	0.71742	0.83239	NaN	1	1	Median	1.1441	1.1164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35847000	18661000	17186000	11410000	4524600	6885000	10677000	7373700	3303300	13760000	6762500	6997600	0	0	0	21600	4473	20443	132954;132955;132956	180320;180321;180322	180321			3	
GVQQLIQR	0	Unmodified	940.54541	0.54541385	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				31.862	30.457	2	0.00063389	24856	160511_QHF_FH_JSI9i_3	124.37	53.031			1.3548	1.1137	NaN	1	1	Median	1.3548	1.1137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46963000	21598000	25365000	46963000	21598000	25365000	0	0	0	0	0	0	0	0	0	21601	4922	20444	132957	180323	180323			1	
GVQSAAVQAFLK	1	Unmodified	1217.6768	0.67682195	3025	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.837	61.556	2	2.0681E-08	52987	160511_QHF_FH_JSI12i_3	140.49	106.1			1.4371	1.4669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4371	1.4669	NaN	1	0	Median	57343000	26925000	30418000	0	0	0	0	0	0	0	0	0	57343000	26925000	30418000	21602	3025	20445	132958	180324;180325	180324			2	
GVQTLVIGR	0	Unmodified	941.56581	0.56581494	4764	Q9H7C9	AAMDC	Mth938 domain-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.4	5.34			2				1	4			4	1	2	48.658	40.243	2	0.00011828	20612	160513_QHF_FH_JSI10Kac_5	99.139	57.836			1.0463	1.1363	30.362	5	3	Median	NaN	NaN	NaN	0	0	Median	0.93705	1.1044	4.0194	2	1	Median	1.117	1.0718	NaN	1	0	Median	1.5063	1.5766	45.371	2	2	Median	138470000	41966000	96505000	0	0	0	6229900	3223500	3006400	6406100	3791600	2614500	125830000	34951000	90884000	21603	4764	20446	132959;132960;132961;132962;132963;132964;132965	180326;180327;180328;180329;180330;180331;180332;180333;180334	180332			9	
GVQVETISPGDGR	0	Unmodified	1313.6575	0.65754307	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6	6		1			3	2			1	3	3	5	39.171	33.692	2	2.5906E-40	19260	160513_QHF_FH_JSI11Kac_3	194.5	157.31			0.99521	1.0308	15.1	9	4	Median	1.0403	0.856	NaN	1	0	Median	0.94799	1.1251	10.649	2	0	Median	1.0142	0.99554	3.653	2	1	Median	1.212	1.0425	19.349	4	3	Linear	3242600000	1535700000	1706900000	805820000	349700000	456120000	861300000	459920000	401390000	748610000	347390000	401220000	826920000	378740000	448170000	21604	2041	20447	132966;132967;132968;132969;132970;132971;132972;132973;132974;132975;132976;132977	180335;180336;180337;180338;180339;180340;180341;180342;180343;180344;180345;180346;180347;180348;180349;180350;180351	180341			17	
GVQVETISPGDGRTFPK	1	Unmodified	1786.9214	0.92136233	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	48.975	48.856	3	4.4553E-06	43212	160511_QHF_FH_JSI11i_3	103.61	95.219			0.29738	0.29264	48.279	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21714	0.208	NaN	1	1	Median	0.40727	0.41171	NaN	1	1	Median	54044000	39447000	14596000	0	0	0	0	0	0	18713000	16882000	1830400	35331000	22565000	12766000	21605	2041	20448	132978;132979	180352;180353;180354	180352			3	
GVQYLNEIK	1	Unmodified	1062.571	0.5709599	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.19	4	4	4			3	3	4	1	4	6	6	7	49.793	44.467	2	1.5161E-09	37829	160511_QHF_FH_JSI12i_2	155.07	97.509			0.80462	0.83745	16.268	23	1	Median	1.2535	1.0399	14.957	4	0	Linear	0.70136	0.82261	13.012	6	0	Median	0.85951	0.83718	17.822	6	0	Median	0.75671	0.8279	19.977	7	1	Median	27952000000	14698000000	13253000000	5048800000	2310300000	2738500000	7361900000	4286200000	3075700000	8032500000	4278800000	3753700000	7508400000	3823100000	3685300000	21606	1033	20449	132980;132981;132982;132983;132984;132985;132986;132987;132988;132989;132990;132991;132992;132993;132994;132995;132996;132997;132998;132999;133000;133001;133002	180355;180356;180357;180358;180359;180360;180361;180362;180363;180364;180365;180366;180367;180368;180369;180370;180371;180372;180373;180374;180375;180376;180377;180378;180379;180380;180381;180382;180383;180384;180385;180386;180387;180388;180389;180390;180391;180392;180393;180394;180395;180396;180397;180398;180399;180400;180401;180402;180403;180404	180359			50	
GVSAAGQVVSLK	1	Unmodified	1114.6346	0.63462279	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.88	3	4				1	3			1	4	3	3	43.354	40.206	2	2.1275E-06	34402	160511_QHF_FH_JSI12i_2	125.72	107.5			1.02	1.1748	29.123	8	4	Median	NaN	NaN	NaN	0	0	Median	0.94548	1.1078	41.422	3	1	Median	1.2582	1.2459	16.872	3	3	Median	1.2073	1.2696	25.057	2	0	Median	276400000	146920000	129490000	0	0	0	99483000	66180000	33304000	111370000	48825000	62545000	65552000	31915000	33637000	21607	5694	20450	133003;133004;133005;133006;133007;133008;133009;133010;133011;133012;133013	180405;180406;180407;180408;180409;180410;180411;180412;180413;180414	180406			10	
GVSAFSTWEK	1	Unmodified	1110.5346	0.53457439	203	O14776;Q5VWI1	TCERG1;TCERG1L	Transcription elongation regulator 1;Transcription elongation regulator 1-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.31		4	3					2	2	4	1	4	2	53.983	49.524	2	5.2951E-11	43549	160511_QHF_FH_JSI11i_3	147.2	132.53			1.0489	0.97194	23.267	10	3	Median	1.1412	0.99892	20.663	3	1	Median	0.74619	0.90082	NaN	1	0	Median	1.0246	0.98378	33.475	4	2	Median	0.95896	1.0252	11.42	2	0	Median	1100100000	511680000	588450000	113160000	47104000	66058000	144600000	83023000	61574000	302870000	144530000	158330000	539500000	237010000	302480000	21608	203	20451	133014;133015;133016;133017;133018;133019;133020;133021;133022;133023;133024	180415;180416;180417;180418;180419;180420;180421;180422;180423;180424;180425;180426;180427	180415			12	
GVSAIVYMVDAADQEK	1	Unmodified	1694.8185	0.81853675	3987	Q96BM9	ARL8A	ADP-ribosylation factor-like protein 8A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5.25	5.63		3						1		2		2		86.287	83.249	2;3	0.001548	75709	160511_QHF_FH_JSI9i_2	69.864	53.61			0.50222	0.44872	36.321	4	3	Linear	0.57516	0.50468	27.246	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74954	0.73397	42.574	2	1	Median	NaN	NaN	NaN	0	0	Median	52027000	35275000	16752000	31677000	23399000	8278200	0	0	0	20350000	11876000	8473500	0	0	0	21609	3987	20452	133025;133026;133027;133028	180428;180429;180430;180431	180428			4	
GVSAVAGPHDIGASPGDKK	2	Unmodified	1761.901	0.90096124	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	24.726	24.713	3	4.4464E-07	21045	160511_QHF_FH_JSI11i_3	98.035	86.773			0.62832	0.60527	36.522	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5151	0.46752	NaN	1	0	Median	0.76641	0.78363	NaN	1	1	Median	80947000	45640000	35307000	0	0	0	0	0	0	39542000	27211000	12331000	41405000	18429000	22976000	21610	3465	20453	133029;133030	180432;180433;180434;180435	180432			4	
GVSAVVVGADR	0	Unmodified	1028.5615	0.56145784	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.57	5.7			3				2	2			2	3	2	35.62	29.109	2	8.792E-06	24797	160511_QHF_FH_JSI12i_3	102.06	65.301			1.0891	1.2012	30.37	6	3	Median	NaN	NaN	NaN	0	0	Median	1.0891	1.265	14.191	2	1	Median	0.96084	0.92017	35.851	3	1	Median	1.2331	1.2785	NaN	1	1	Median	124380000	56569000	67808000	0	0	0	17680000	8954400	8725700	67023000	32301000	34722000	39674000	15314000	24361000	21611	4456	20454	133031;133032;133033;133034;133035;133036;133037	180436;180437;180438;180439;180440;180441;180442	180442			6	
GVSAYSGHYIAHVK	1	Unmodified	1487.7521	0.75211216	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	2	2	1	34.551	27.148	3;4	2.8371E-05	15293	160513_QHF_FH_JSI10Kac_6	80.96	68.399			1.0222	0.98171	36.302	6	1	Median	1.4206	1.2074	1.2554	2	0	Median	0.92791	1.1039	44.691	2	0	Median	0.69788	0.67355	25.274	2	1	Median	NaN	NaN	NaN	0	0	Median	65038000	36613000	28425000	16819000	7322800	9495700	18890000	9245100	9645200	29330000	20045000	9284300	0	0	0	21612	3331	20455	133038;133039;133040;133041;133042;133043;133044	180443;180444;180445;180446;180447	180446			4	
GVSEAAVLKPSEELPAEATSSVEPEK	2	Unmodified	2653.3334	0.33342155	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.129	65.528	3	5.2607E-10	59733	160511_QHF_FH_JSI12i_1	81.297	74.265			1.0478	1.0623	6.5176	4	0	Linear	1.0829	0.92193	NaN	1	0	Median	0.86251	1.0027	NaN	1	0	Median	1.0765	1.0495	NaN	1	0	Median	1.0198	1.0659	NaN	1	0	Median	189920000	97657000	92263000	28810000	16393000	12417000	48687000	23603000	25084000	53231000	28941000	24290000	59192000	28719000	30472000	21613	644	20456	133045;133046;133047;133048	180448;180449;180450	180449			3	
GVSFYEVPPHLFAVADTVYR	0	Unmodified	2266.1423	0.14225415	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	6.29	6.16		3	2						2	1		3	3	97.19	94.013	3	2.4645E-33	88413	160511_QHF_FH_JSI11i_2	149.94	135.9			1.159	1.1358	49.015	6	3	Median	1.4586	1.2443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5165	1.4115	90.577	2	1	Median	0.921	1.0368	41.262	3	2	Median	508210000	228720000	279490000	76623000	34481000	42142000	0	0	0	178790000	59467000	119330000	252800000	134770000	118020000	21614	100	20457	133049;133050;133051;133052;133053;133054;133055	180451;180452;180453;180454;180455;180456	180454			5	
GVSGVDLYR	0	Unmodified	964.49779	0.49779495	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.038	35.604	2	0.0029571	30356	160511_QHF_FH_JSI11i_2	61.679	42.948			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21615	5698	20458	133056	180457	180457			1	
GVSIPLMHEAMQK	1	Unmodified	1439.7265	0.72649104	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	60.23	59.504	3	1.1155E-06	52795	160511_QHF_FH_JSI11i_3	125.53	117.35			1.2596	1.1893	20.614	5	2	Median	1.0778	0.92981	NaN	1	0	Median	1.0352	1.2315	31.728	2	1	Median	1.2596	1.1893	NaN	1	1	Median	1.2862	1.2994	NaN	1	0	Median	563420000	210960000	352450000	28589000	13960000	14629000	110340000	50356000	59986000	192480000	56921000	135550000	232010000	89728000	142280000	21616	3172	20459	133057;133058;133059;133060;133061	180458;180459;180460	180458			3	
GVSKAVEHINK	2	Acetyl (K)	1222.667	0.66698555	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.78							7	9	7	2	6	8	7	30.668	21.538	2;3	2.0569E-20	12992	160513_QHF_FH_JSI11Kac_5	166.04	118.44			0.62291	0.70073	68.009	15	0	Median	NaN	NaN	NaN	0	0	Median	1.1355	1.361	8.1813	5	0	Median	0.29058	0.27725	18.85	5	0	Median	0.62291	0.70073	18.642	5	0	Median	375030000	234480000	140550000	2723300	1704700	1018600	107560000	45956000	61602000	204680000	150910000	53778000	60065000	35915000	24151000	21617	854	20460	133062;133063;133064;133065;133066;133067;133068;133069;133070;133071;133072;133073;133074;133075;133076;133077;133078;133079;133080;133081;133082;133083;133084	180461;180462;180463;180464;180465;180466;180467;180468;180469;180470;180471;180472;180473;180474;180475;180476;180477;180478;180479;180480;180481;180482;180483;180484;180485;180486;180487;180488;180489	180474	518;521		29	
GVSLTNHHFYDESK	1	Unmodified	1632.7532	0.75323437	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.66	5.5		8	24						9	12	11	9	9	34.628	31.873	2;3;4	1.3798E-116	27433	160511_QHF_FH_JSI11i_3	269.2	250.45			1.0834	0.98888	44.516	36	13	Median	1.159	0.98048	7.4258	10	4	Median	0.85203	1.0183	42.85	10	5	Median	1.0329	1.0162	63.397	9	2	Median	1.0058	1.086	55.543	7	2	Median	6397100000	2859000000	3538100000	793660000	365910000	427750000	803820000	423030000	380800000	2944500000	1251600000	1692900000	1855100000	818460000	1036600000	21618	1050	20461	133085;133086;133087;133088;133089;133090;133091;133092;133093;133094;133095;133096;133097;133098;133099;133100;133101;133102;133103;133104;133105;133106;133107;133108;133109;133110;133111;133112;133113;133114;133115;133116;133117;133118;133119;133120;133121;133122;133123;133124;133125	180490;180491;180492;180493;180494;180495;180496;180497;180498;180499;180500;180501;180502;180503;180504;180505;180506;180507;180508;180509;180510;180511;180512;180513;180514;180515;180516;180517;180518;180519;180520;180521;180522;180523;180524;180525;180526;180527;180528;180529;180530;180531;180532;180533;180534;180535;180536;180537;180538;180539;180540;180541;180542;180543;180544;180545;180546	180493			57	
GVSPEPIHLK	1	Unmodified	1075.6026	0.60259438	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.7		8	2					1		3	2	3	3	34.446	32.814	2;3	9.0465E-05	28550	160511_QHF_FH_JSI9i_2	99.442	90.593			1.2951	1.2722	19.96	10	1	Median	1.4492	1.2378	22.094	3	1	Median	1.0238	1.2391	25.545	2	0	Median	1.4483	1.4565	20.282	3	0	Plateau	1.3918	1.4992	23.661	2	0	Median	1313900000	575180000	738670000	201720000	80407000	121310000	254850000	127470000	127380000	604030000	264580000	339460000	253250000	102720000	150530000	21619	133	20462	133126;133127;133128;133129;133130;133131;133132;133133;133134;133135;133136	180547;180548;180549;180550;180551;180552;180553;180554	180552			8	
GVSQMPLR	0	Unmodified	886.46947	0.46947171	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									2	1		25.687	25.169	2	0.001664	21069	160511_QHF_FH_JSI11i_2	110.81	90.253			0.23606	0.25372	62.097	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.5178	0.62937	23.282	2	1	Median	0.21719	0.22311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	999720000	740150000	259560000	0	0	0	441280000	308480000	132800000	558440000	431680000	126760000	0	0	0	21620	1381	20463	133137;133138;133139	180555;180556;180557	180556			3	
GVSSESSGDREK	1	Unmodified	1236.5582	0.55822296	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	8	8	4				2			4	4	7	7	4.6736	3.7366	2;3	5.08E-128	2172	160511_QHF_FH_JSI12i_3	292.68	271.81			0.90812	0.96482	11.86	22	0	Median	1.0491	0.87074	15.036	4	0	Median	0.76627	0.91589	7.778	4	0	Median	1.018	0.98756	10.529	7	0	Median	0.88308	0.96069	14.032	7	0	Median	6681800000	3450600000	3231200000	935420000	496310000	439110000	1412300000	841810000	570510000	2475600000	1116400000	1359300000	1858400000	996070000	862300000	21621	2412	20464	133140;133141;133142;133143;133144;133145;133146;133147;133148;133149;133150;133151;133152;133153;133154;133155;133156;133157;133158;133159;133160;133161	180558;180559;180560;180561;180562;180563;180564;180565;180566;180567;180568;180569;180570;180571;180572;180573;180574;180575;180576;180577;180578;180579;180580;180581;180582;180583;180584;180585;180586;180587;180588;180589;180590;180591;180592	180590			35	
GVSSLSIQFAK	1	Unmodified	1135.6237	0.62372375	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.2			1					3		1	1	1	1	65.462	58.202	2	5.4847E-05	31426	160513_QHF_FH_JSI11Kac_5	98.044	92.604			2.4175	2.4106	52.673	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.71615	0.842	NaN	1	0	Median	1.3754	1.3549	NaN	1	0	Median	2.4175	2.4106	NaN	1	1	Median	61726000	21161000	40565000	0	0	0	3512100	2088200	1423900	4336500	1768800	2567700	53878000	17304000	36573000	21622	3003	20465	133162;133163;133164;133165	180593;180594;180595;180596	180594			4	
GVSSQETAGIGASAHLVNFK	1	Unmodified	1972.0014	0.0014035686	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.37		3	5						2	4	2	2	2	59.799	57.435	2;3	2.3486E-68	49542	160511_QHF_FH_JSI12i_3	232.84	226.27			0.96	0.95457	9.5479	10	3	Median	1.1413	0.97658	9.2376	4	2	Median	0.8349	0.99022	8.6576	2	0	Median	1.0078	0.98646	17.994	2	1	Median	0.87719	0.8983	6.0142	2	0	Median	1540000000	780560000	759470000	221990000	108570000	113420000	328860000	195650000	133210000	161160000	93225000	67937000	828000000	383110000	444900000	21623	1566	20466	133166;133167;133168;133169;133170;133171;133172;133173;133174;133175	180597;180598;180599;180600;180601;180602;180603;180604;180605;180606;180607;180608;180609;180610;180611;180612;180613;180614;180615	180611			19	
GVSTFMAEMLETASILR	0	Unmodified	1854.922	0.92195596	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11.7	6.13			1						2	2		1		100.45	95.885	2;3	3.1772E-16	51158	160513_QHF_FH_JSI9Kac_6	141.54	120.28			1.0236	0.90745	54.439	2	0	Median	0.72712	0.61751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.441	1.3335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86991000	37991000	49001000	42639000	20192000	22447000	0	0	0	44352000	17799000	26554000	0	0	0	21624	1557	20467	133176;133177;133178	180616;180617;180618	180617			2	
GVSVSSSTTGLPDMTGSVYNK	1	Unmodified	2085.9888	0.98884955	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	65.243	64.751	2	4.5773E-27	58592	160511_QHF_FH_JSI10i_1	194.85	173.9			0.65652	0.69512	8.3529	2	1	Median	NaN	NaN	NaN	0	0	Median	0.66036	0.73741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65269	0.65525	NaN	1	0	Median	37379000	26069000	11309000	0	0	0	20133000	16323000	3809700	0	0	0	17246000	9746500	7499600	21625	2950	20468	133179;133180	180619;180620	180620			2	
GVTCLSFSK	1	Unmodified	997.49027	0.49026674	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	40.529	40.198	2	0.00072962	34535	160511_QHF_FH_JSI11i_2	86.136	59.174			1.1289	1.1403	89.954	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61307	0.60364	NaN	1	1	Median	2.0788	2.1541	NaN	1	1	Median	121490000	64407000	57079000	0	0	0	0	0	0	82484000	49691000	32792000	39002000	14715000	24286000	21626	2801	20469	133181;133182;133183	180621;180622;180623	180622			3	
GVTDHTQR	0	Unmodified	912.44134	0.44134271	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	2.2564	1.8265	2	0.0011254	914	160511_QHF_FH_JSI10i_2	86.794	66.239			1.0155	0.85349	4.8773	3	1	Plateau	1.0155	0.85349	NaN	1	0	Median	0.75714	0.92458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80539	0.84641	NaN	1	0	Median	57831000	32353000	25478000	23018000	11261000	11757000	21189000	12036000	9152900	0	0	0	13624000	9056200	4567500	21627	2517	20470	133184;133185;133186;133187	180624;180625;180626;180627	180627			4	
GVTEAIQNFSFR	0	Unmodified	1367.6834	0.68336389	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			69.247	67.775	2	4.6481E-07	55624	160511_QHF_FH_JSI9i_3	108.67	81.552			0.91599	1.0481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91599	1.0481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28606000	14345000	14261000	0	0	0	28606000	14345000	14261000	0	0	0	0	0	0	21628	476	20471	133188;133189;133190	180628;180629;180630	180629			3	
GVTECYECHPKPTQR	1	Unmodified	1860.8247	0.82470153	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			15.189	14.257	3	0.022124	11397	160511_QHF_FH_JSI10i_3	35.891	18.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21629	5254	20472	133191	180631	180631			1	
GVTFLFPIQAK	1	Unmodified	1219.6965	0.69649476	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.35	1	4	4				3	5	5	4	6	6	6	87.836	82.589	2	7.6182E-36	42561	160513_QHF_FH_JSI11Kac_6	198.65	154.84			0.87828	0.91514	12.759	19	4	Median	1.284	1.1121	15.565	4	0	Linear	0.74103	0.87775	7.0134	5	2	Median	0.92953	0.91205	19.573	5	0	Median	0.87828	0.97587	6.9477	5	2	Median	2525700000	1249700000	1276100000	538230000	244560000	293670000	413410000	235560000	177850000	869940000	412910000	457020000	704160000	356650000	347510000	21630	4940	20473	133192;133193;133194;133195;133196;133197;133198;133199;133200;133201;133202;133203;133204;133205;133206;133207;133208;133209;133210;133211;133212;133213	180632;180633;180634;180635;180636;180637;180638;180639;180640;180641;180642;180643;180644;180645;180646;180647;180648;180649;180650;180651;180652;180653;180654;180655	180637			20	
GVTFNVTTVDTK	1	Unmodified	1280.6612	0.66123147	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.2	4	4	3		1	4	2	5	2	5	8	5	7	56.532	50.277	2	1.2742E-64	47011	160511_QHF_FH_JSI10i_1	226.29	197.14			0.93452	0.94689	19.926	24	3	Median	1.0012	0.83254	20.25	4	0	Median	0.80278	0.94689	9.6113	8	0	Median	0.9893	0.93407	12.434	5	1	Median	0.99141	1.0224	30.773	7	2	Median	5065900000	2505300000	2560600000	1322700000	714400000	608250000	1557600000	777450000	780160000	975290000	417390000	557900000	1210400000	596040000	614330000	21631	119	20474	133214;133215;133216;133217;133218;133219;133220;133221;133222;133223;133224;133225;133226;133227;133228;133229;133230;133231;133232;133233;133234;133235;133236;133237;133238	180656;180657;180658;180659;180660;180661;180662;180663;180664;180665;180666;180667;180668;180669;180670;180671;180672;180673;180674;180675;180676;180677;180678;180679;180680;180681;180682;180683;180684;180685;180686;180687;180688;180689;180690;180691;180692;180693;180694;180695;180696;180697;180698;180699;180700;180701;180702	180676			46	
GVTFNVTTVDTKR	1	Unmodified	1436.7623	0.7623425	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			44.987	43.409	3	0.0012976	36159	160511_QHF_FH_JSI10i_3	53.754	46.715			1.1282	1.1085	59.493	2	0	Median	2.058	1.6883	NaN	1	0	Median	0.61852	0.72787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49735000	25124000	24610000	22998000	8740300	14258000	26736000	16384000	10352000	0	0	0	0	0	0	21632	119	20475	133239;133240	180703;180704;180705;180706	180703			4	
GVTIIGPATVGGIK	1	Unmodified	1281.7656	0.76563696	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.61	6.09	2	4	4			1	3	4		3	6	5	4	70.882	65.658	2	5.3061E-10	56981	160511_QHF_FH_JSI12i_2	150.46	132.23			0.98659	0.96393	14.634	17	4	Median	1.0042	0.85132	8.2664	3	0	Plateau	0.80415	0.95725	22.046	5	2	Median	1.004	0.99925	13.095	5	1	Median	0.90463	0.99582	8.4058	4	1	Median	2213500000	1128300000	1085200000	379790000	181920000	197870000	556660000	322320000	234340000	899960000	423950000	476010000	377060000	200080000	176970000	21633	1798	20476	133241;133242;133243;133244;133245;133246;133247;133248;133249;133250;133251;133252;133253;133254;133255;133256;133257;133258	180707;180708;180709;180710;180711;180712;180713;180714;180715;180716;180717;180718;180719;180720;180721;180722;180723;180724	180709			18	
GVTIIGPATVGGIKPGCFK	2	Unmodified	1871.0339	0.033889671	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	3	1	73.838	73.2	2;3	1.0207E-16	65325	160511_QHF_FH_JSI11i_3	174.49	160.86			0.82217	0.8988	16.913	5	5	Median	1.1834	0.97888	NaN	1	1	Median	0.80012	0.8988	NaN	1	1	Median	0.77016	0.73636	12.238	2	2	Median	1.0127	1.0312	NaN	1	1	Median	1735600000	984910000	750690000	320190000	151720000	168470000	436940000	267070000	169870000	564470000	331710000	232760000	414010000	234410000	179590000	21634	1798	20477	133259;133260;133261;133262;133263;133264	180725;180726;180727;180728;180729;180730;180731;180732;180733;180734	180726			10	
GVTIKPTVDDD	1	Unmodified	1158.5768	0.57683314	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.167	32.564	2	3.0671E-12	29300	160511_QHF_FH_JSI12i_1	147.78	137.49			0.97576	0.9786	13.151	4	0	Median	0.95662	0.77441	NaN	1	0	Median	0.80895	0.97673	NaN	1	0	Median	1.0093	0.98047	NaN	1	0	Median	0.99529	1.0445	NaN	1	0	Median	2153000000	1143100000	1009900000	405630000	210890000	194750000	619920000	345900000	274020000	675930000	357930000	318000000	451480000	228360000	223120000	21635	1508	20478	133265;133266;133267;133268	180735;180736;180737;180738;180739;180740;180741;180742;180743;180744	180738			10	
GVTIPYRPK	1	Unmodified	1029.5971	0.59711507	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.82	2	3	15					1	6	6	8	9	4	35.003	31.938	2;3	1.3676E-09	26649	160511_QHF_FH_JSI10i_3	133.55	108.63			0.87649	0.8661	37.686	21	3	Median	1.0008	0.83852	13.657	6	1	Median	0.57448	0.71122	23.526	5	1	Median	0.96128	0.92713	46.606	7	0	Median	0.84347	0.8661	66.89	3	1	Median	5926000000	3182100000	2743900000	2139900000	1012400000	1127500000	1500800000	917610000	583170000	1824400000	979610000	844790000	460920000	272500000	188410000	21636	2657	20479	133269;133270;133271;133272;133273;133274;133275;133276;133277;133278;133279;133280;133281;133282;133283;133284;133285;133286;133287;133288;133289;133290;133291;133292;133293;133294;133295	180745;180746;180747;180748;180749;180750;180751;180752;180753;180754;180755;180756;180757;180758;180759;180760;180761;180762;180763;180764;180765;180766;180767;180768;180769;180770;180771;180772;180773;180774;180775;180776;180777;180778;180779;180780;180781;180782;180783;180784;180785;180786;180787;180788;180789;180790;180791;180792	180763			48	
GVTKNMAQVTK	2	Acetyl (K)	1217.6438	0.64380726	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		39.824	30.834	2	0.00013451	17742	160513_QHF_FH_JSI11Kac_3	94.616	58.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2946000	2946000	0	0	0	0	1064000	1064000	0	1882000	1882000	0	0	0	0	21637	4873	20480	133296;133297	180793;180794	180793	3255		2	
GVTLGFR	0	Unmodified	748.42317	0.42317345	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.76	4	5	2				1	4	4	4	6	4	6	44.447	39.041	2	4.8922E-15	34407	160511_QHF_FH_JSI10i_2	182.31	94.725			0.91962	0.96836	10.425	18	3	Median	1.2019	1.0236	7.3194	4	0	Median	0.83637	1.0042	10.612	6	0	Median	0.94309	0.93252	6.1065	4	1	Median	0.85749	0.90857	10.167	4	2	Median	10314000000	4883900000	5430100000	3995000000	1685500000	2309500000	4401500000	2183000000	2218500000	1363200000	698970000	664260000	554260000	316400000	237860000	21638	1398	20481	133298;133299;133300;133301;133302;133303;133304;133305;133306;133307;133308;133309;133310;133311;133312;133313;133314;133315;133316;133317	180795;180796;180797;180798;180799;180800;180801;180802;180803;180804;180805;180806;180807;180808;180809;180810;180811;180812;180813;180814;180815;180816;180817;180818;180819;180820;180821;180822	180815			28	
GVTNDQVDPSVDVLK	1	Unmodified	1584.7995	0.79951586	5525	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		55.779	55.364	2	0.00068077	50130	160511_QHF_FH_JSI11i_1	86.772	52.886			0.87781	0.84083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87781	0.84083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47574000	28282000	19291000	0	0	0	0	0	0	47574000	28282000	19291000	0	0	0	21639	5525	20482	133318	180823	180823			1	
GVTPAGFPK	1	Unmodified	872.4756	0.47560295	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		43.154	33.018	2	0.012443	19872	160513_QHF_FH_JSI11Kac_4	55.676	45.262			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21640	3805	20483	133319	180824	180824			1	
GVTQEVDGLSQTDGTLTYFDK	1	Unmodified	2273.0699	0.069936644	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				79.045	78.173	3	0.037737	69549	160511_QHF_FH_JSI9i_1	25.67	11.056			2.3654	1.931	NaN	1	1	Median	2.3654	1.931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14815000	4721800	10093000	14815000	4721800	10093000	0	0	0	0	0	0	0	0	0	21641	3585	20484	133320	180825	180825			1	
GVTQFGNK	1	Unmodified	849.43447	0.43446642	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.81	5	5	4				3	3		2	6	6	6	16.159	12.987	2	8.0319E-15	10695	160511_QHF_FH_JSI12i_3	173.93	111.22			1.1216	1.174	35.155	15	9	Median	1.1658	0.97474	NaN	1	0	Median	0.92301	1.0809	46.368	5	4	Median	1.2356	1.1849	30.761	5	3	Median	1.2306	1.3078	29.686	4	2	Median	1728700000	825500000	903240000	222940000	83937000	139000000	389260000	179970000	209300000	662850000	331060000	331780000	453700000	230530000	223160000	21642	379	20485	133321;133322;133323;133324;133325;133326;133327;133328;133329;133330;133331;133332;133333;133334;133335;133336;133337;133338;133339;133340	180826;180827;180828;180829;180830;180831;180832;180833;180834;180835;180836;180837;180838;180839;180840;180841;180842;180843;180844;180845;180846;180847;180848;180849;180850	180850			25	
GVTQFGNKYIQQTK	2	Acetyl (K)	1652.8522	0.85222014	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	1.31				2	3	9	14	11	8	11	15	10	11	55.451	44.973	2;3	0	28691	160513_QHF_FH_JSI11Kac_4	402.81	366.22			0.92164	0.98623	287.69	43	13	Median	1.1284	1.4153	68.002	8	0	Linear	0.8796	1.005	299.84	14	5	Median	1.0009	0.9931	341.93	10	4	Median	0.91475	0.91786	342.83	11	4	Median	18625000000	9441400000	9183200000	5340700000	2506200000	2834400000	5643900000	3044200000	2599700000	4046500000	2094500000	1952000000	3593500000	1796500000	1797000000	21643	379	20486	133341;133342;133343;133344;133345;133346;133347;133348;133349;133350;133351;133352;133353;133354;133355;133356;133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368;133369;133370;133371;133372;133373;133374;133375;133376;133377;133378;133379;133380;133381;133382;133383;133384;133385;133386;133387	180851;180852;180853;180854;180855;180856;180857;180858;180859;180860;180861;180862;180863;180864;180865;180866;180867;180868;180869;180870;180871;180872;180873;180874;180875;180876;180877;180878;180879;180880;180881;180882;180883;180884;180885;180886;180887;180888;180889;180890;180891;180892;180893;180894;180895;180896;180897;180898;180899;180900;180901;180902;180903;180904;180905;180906;180907;180908;180909;180910;180911;180912;180913;180914;180915;180916;180917;180918;180919;180920;180921;180922;180923;180924;180925;180926;180927;180928;180929;180930;180931;180932;180933;180934;180935;180936;180937;180938;180939;180940;180941;180942;180943;180944;180945;180946	180882	196;197		95	
GVTQFGNKYIQQTKPLTLER	2	Acetyl (K)	2362.2645	0.26449455	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	1	0	0	2	By MS/MS				16	0									1	1				74.541	65.956	3	6.0261E-05	35214	160513_QHF_FH_JSI9Kac_6	122.53	91.065			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24120000	24120000	0	24120000	24120000	0	0	0	0	0	0	0	0	0	0	21644	379	20487	133388	180947	180947	196;197		1	
GVTQIDNDLK	1	Unmodified	1101.5666	0.5666028	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	35.864	32.486	2	6.5802E-07	28861	160511_QHF_FH_JSI11i_1	121.6	50.684			1.3839	1.4649	9.2485	6	3	Median	1.8159	1.4557	NaN	1	1	Median	1.2579	1.4743	NaN	1	1	Median	1.3401	1.3157	4.2036	2	1	Median	1.4981	1.5882	7.2466	2	0	Median	928990000	400530000	528450000	243440000	102280000	141150000	250960000	112920000	138030000	239650000	112920000	126730000	194940000	72405000	122530000	21645	1190	20488	133389;133390;133391;133392;133393;133394;133395	180948;180949;180950;180951;180952;180953;180954;180955	180948			8	
GVTQIDNDLKSR	1	Acetyl (K)	1386.7103	0.71030693	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		50.802	41.314	2	0.030613	22724	160513_QHF_FH_JSI11Kac_3	52.79	35.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	569290	569290	0	0	0	0	0	0	0	569290	569290	0	0	0	0	21646	1190	20489	133396	180956	180956			1	
GVTQYYAYVTER	0	Unmodified	1448.6936	0.69359423	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.26	6.49		5	4					6	4	4	6	4	5	61.463	56.385	2;3	9.9688E-92	29905	160513_QHF_FH_JSI9Kac_6	257.42	225.1			1.1001	1.0701	10.137	17	6	Median	1.1981	1.0088	6.6627	4	2	Median	0.84713	1.0212	7.571	4	0	Median	1.1244	1.1185	6.2282	4	2	Median	1.0329	1.1378	14.679	5	2	Median	2875900000	1388300000	1487600000	705670000	326390000	379280000	522000000	288420000	233580000	764950000	343450000	421500000	883290000	430030000	453270000	21647	1271	20490	133397;133398;133399;133400;133401;133402;133403;133404;133405;133406;133407;133408;133409;133410;133411;133412;133413;133414;133415	180957;180958;180959;180960;180961;180962;180963;180964;180965;180966;180967;180968;180969;180970;180971;180972;180973;180974;180975;180976;180977;180978;180979;180980;180981;180982;180983;180984;180985	180980			29	
GVTSAVNIMHSSLQQGK	1	Unmodified	1755.8938	0.89376737	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		50.716	49.662	2;3	6.499E-11	43784	160511_QHF_FH_JSI11i_3	149.97	140.05			1.0838	0.9085	8.3085	3	1	Plateau	1.1904	0.96203	NaN	1	0	Median	0.74162	0.85795	NaN	1	0	Median	1.0838	1.0084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213970000	107050000	106910000	57382000	27758000	29623000	58479000	34362000	24117000	98106000	44932000	53173000	0	0	0	21648	4808	20491	133416;133417;133418;133419	180986;180987;180988;180989;180990;180991	180986			6	
GVTSILPVLR	0	Unmodified	1053.6546	0.65462995	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			76.781	75.366	2	4.6801E-06	63224	160511_QHF_FH_JSI10i_3	136.75	90.737			0.66048	0.79802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66048	0.79802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89285000	45672000	43612000	0	0	0	89285000	45672000	43612000	0	0	0	0	0	0	21649	3860	20492	133420	180992	180992			1	
GVTVGEGVR	0	Unmodified	872.47158	0.4715802	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.332	17.059	2	0.0030732	13829	160511_QHF_FH_JSI11i_2	60.91	27.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21650	4124	20493	133421	180993	180993			1	
GVTYLFPIQVK	1	Unmodified	1263.7227	0.72270951	4346	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6	6.38	1	1						1			1	2		85.444	81.612	2	0.00010838	39490	160513_QHF_FH_JSI11Kac_5	95.099	57.623			0.48166	0.58983	29.739	3	3	Median	NaN	NaN	NaN	0	0	Median	0.48166	0.58983	NaN	1	1	Median	0.55156	0.52137	40.833	2	2	Median	NaN	NaN	NaN	0	0	Median	30783000	23159000	7624600	0	0	0	21272000	14700000	6571500	9511600	8458500	1053100	0	0	0	21651	4346	20494	133422;133423;133424	180994;180995;180996	180995			3	
GVVCIDEFDK	1	Unmodified	1180.5434	0.54342452	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	56.32	55.831	2	0.0005345	50613	160511_QHF_FH_JSI11i_1	71.614	29.505			0.72882	0.69387	32.708	3	1	Median	NaN	NaN	NaN	0	0	Median	0.58775	0.65039	NaN	1	1	Median	0.72882	0.69387	NaN	1	0	Median	1.1529	1.1805	NaN	1	0	Median	92655000	49656000	43000000	0	0	0	19436000	11557000	7879000	39695000	23227000	16468000	33524000	14871000	18653000	21652	1254	20495	133425;133426;133427	180997;180998;180999	180998			3	
GVVDHLLLR	0	Unmodified	1020.608	0.60801411	3565	Q8N884	MB21D1	Cyclic GMP-AMP synthase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	53.317	52.412	2	0.00025092	43124	160511_QHF_FH_JSI9i_3	96.253	61.445			1.0498	0.95574	39.871	2	1	Median	1.5341	1.267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71839	0.72094	NaN	1	0	Median	48335000	24491000	23844000	21891000	8703500	13187000	0	0	0	0	0	0	26444000	15788000	10657000	21653	3565	20496	133428;133429	181000;181001	181000			1	
GVVDRLEVVNK	1	Unmodified	1226.6983	0.69828568	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		40.143	39.137	2;3	4.6566E-05	32803	160511_QHF_FH_JSI10i_3	71.085	55.698			0.89671	0.90122	12.885	6	0	Median	1.105	0.90122	7.5978	2	0	Median	0.88614	1.0083	2.3502	2	0	Median	0.81725	0.7738	7.7766	2	0	Median	NaN	NaN	NaN	0	0	Median	749460000	378900000	370560000	284520000	136340000	148180000	212380000	118240000	94134000	252570000	124320000	128250000	0	0	0	21654	5640	20497	133430;133431;133432;133433;133434;133435	181002;181003;181004;181005;181006;181007;181008;181009;181010;181011	181007			10	
GVVDSDDLPLNVSR	0	Unmodified	1484.7471	0.74708636	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	4.83	17	6	2			2	1	1	1	9	9	7	5	64.754	62.269	2;3	1.0894E-65	56304	160511_QHF_FH_JSI12i_1	271.14	219.88			1.0382	1.029	24.201	26	8	Median	1.1436	0.95578	12.985	6	1	Median	0.80986	0.97754	11.585	8	4	Median	1.1726	1.1396	34.06	7	2	Median	1.0493	1.1355	27.692	5	1	Median	13738000000	7042000000	6696200000	2788700000	1310300000	1478500000	4749200000	2686900000	2062300000	3387000000	1631400000	1755500000	2813300000	1413300000	1400000000	21655	1057	20498	133436;133437;133438;133439;133440;133441;133442;133443;133444;133445;133446;133447;133448;133449;133450;133451;133452;133453;133454;133455;133456;133457;133458;133459;133460;133461;133462;133463;133464;133465	181012;181013;181014;181015;181016;181017;181018;181019;181020;181021;181022;181023;181024;181025;181026;181027;181028;181029;181030;181031;181032;181033;181034;181035;181036;181037;181038;181039;181040;181041;181042;181043;181044;181045;181046;181047;181048;181049;181050;181051;181052;181053;181054;181055;181056;181057;181058;181059;181060;181061;181062;181063;181064;181065	181027			52	
GVVDSEDLPLNISR	0	Unmodified	1512.7784	0.77838649	898;880	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	5.95	7	8	4		3	5	6	4		8	12	7	10	68.638	63.255	2;3	1.0057E-199	34849	160513_QHF_FH_JSI10Kac_4	318.84	0			1.0357	1.0319	34.972	33	5	Median	1.2145	0.97344	65.114	8	0	Plateau	0.81154	0.94387	12.912	10	3	Median	1.0767	1.0498	20.567	6	1	Median	1.0008	1.0963	10.303	9	1	Median	22021000000	12066000000	9955000000	2332800000	1064600000	1268100000	16621000000	9465000000	7155700000	1392700000	680300000	712350000	1674800000	856080000	818770000	21656	898;880	20499	133466;133467;133468;133469;133470;133471;133472;133473;133474;133475;133476;133477;133478;133479;133480;133481;133482;133483;133484;133485;133486;133487;133488;133489;133490;133491;133492;133493;133494;133495;133496;133497;133498;133499;133500;133501;133502	181066;181067;181068;181069;181070;181071;181072;181073;181074;181075;181076;181077;181078;181079;181080;181081;181082;181083;181084;181085;181086;181087;181088;181089;181090;181091;181092;181093;181094;181095;181096;181097;181098;181099;181100;181101;181102;181103;181104;181105;181106;181107;181108;181109;181110;181111;181112;181113;181114;181115;181116;181117;181118;181119;181120;181121;181122;181123;181124;181125;181126;181127;181128;181129;181130	181086			65	
GVVDSEDLPLNISREMLQQSK	1	Unmodified	2357.1897	0.18967462	898;880	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	1			By MS/MS		3	0			1									1		89.104	89.104	3	2.1299E-05	79467	160511_QHF_FH_JSI11i_3	78.021	57.278			0.19813	0.18393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19813	0.18393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16081000	14884000	1197100	0	0	0	0	0	0	16081000	14884000	1197100	0	0	0	21657	898;880	20500	133503	181131	181131			1	
GVVEVTHDLQK	1	Unmodified	1223.651	0.65100113	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.03	6.27	3	8	6				6	8	1	6	7	9	10	35.071	30.403	2;3	9.7804E-48	25874	160511_QHF_FH_JSI12i_2	216.45	193.02			1.0006	1.0117	29.582	30	4	Median	0.96423	0.80546	8.625	6	0	Median	0.71312	0.85605	22.501	6	0	Median	1.1065	1.0897	20.276	9	3	Median	0.99582	1.0469	34.719	9	1	Median	9909000000	4865400000	5043600000	1685900000	827120000	858770000	1912900000	1013300000	899570000	3541200000	1627500000	1913700000	2769100000	1397500000	1371600000	21658	1706	20501	133504;133505;133506;133507;133508;133509;133510;133511;133512;133513;133514;133515;133516;133517;133518;133519;133520;133521;133522;133523;133524;133525;133526;133527;133528;133529;133530;133531;133532;133533;133534;133535	181132;181133;181134;181135;181136;181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149;181150;181151;181152;181153;181154;181155;181156;181157;181158;181159;181160;181161;181162;181163;181164;181165;181166;181167;181168;181169;181170;181171;181172;181173;181174;181175;181176;181177;181178;181179;181180;181181;181182;181183;181184;181185;181186;181187;181188;181189;181190;181191	181140			60	
GVVEVTHDLQKHLAGLGLTEAIDK	2	Acetyl (K)	2584.3861	0.38606625	1706	P50454	SERPINH1	Serpin H1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									5		2	3		90.889	82.993	3;4	1.1782E-196	43577	160513_QHF_FH_JSI11Kac_6	296.49	259.09			0.51344	0.54778	123.9	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4197	1.658	10.269	2	0	Median	0.20248	0.19439	0.15434	2	0	Median	NaN	NaN	NaN	0	0	Median	1359900000	1079600000	280300000	0	0	0	242380000	115490000	126890000	1117500000	964100000	153420000	0	0	0	21659	1706	20502	133536;133537;133538;133539;133540	181192;181193;181194;181195;181196;181197;181198;181199	181194	1716;1717		8	
GVVFDVTSGK	1	Unmodified	1007.5288	0.52876073	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			45.912	44.648	2	0.04939	39188	160511_QHF_FH_JSI10i_2	43.308	23.531			0.37388	0.44914	6.6774	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37388	0.44914	6.6774	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152960000	105500000	47456000	0	0	0	152960000	105500000	47456000	0	0	0	0	0	0	21660	5428	20503	133541;133542	181200;181201	181201			2	
GVVFSVTTVDLK	1	Unmodified	1263.7075	0.70745338	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.33	6.13		2						1		1	1	1		75.939	75.184	2	0.0004502	66298	160511_QHF_FH_JSI9i_2	86.898	76.069			0.37091	0.37913	9.1051	2	2	Median	0.47909	0.40435	NaN	1	1	Median	0.28715	0.35549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51392000	36754000	14639000	26785000	18431000	8353700	24607000	18323000	6284800	0	0	0	0	0	0	21661	5711	20504	133543;133544;133545	181202;181203;181204	181202			3	
GVVGGVTGIITK	1	Unmodified	1099.6601	0.66010926	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.035	54.793	2	0.014223	47106	160511_QHF_FH_JSI12i_3	64.103	55.24			0.94339	0.92656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94339	0.92656	NaN	1	0	Median	32823000	19713000	13111000	0	0	0	0	0	0	0	0	0	32823000	19713000	13111000	21662	3196	20505	133546	181205	181205			0	
GVVGLFK	1	Unmodified	718.43776	0.43776088	664;3358	O95248;Q86WG5	SBF1;SBF2	Myotubularin-related protein 5;Myotubularin-related protein 13	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	47.996	47.141	2	0.011089	38809	160511_QHF_FH_JSI9i_3	72.021	19.79			1.261	1.1486	87.059	4	2	Median	0.81807	0.67869	NaN	1	0	Median	0.44482	0.49695	NaN	1	0	Median	3.3337	3.1625	NaN	1	1	Median	1.9439	1.944	NaN	1	1	Median	288430000	85029000	203400000	45817000	23097000	22720000	29096000	18255000	10841000	108670000	20122000	88546000	104850000	23555000	81297000	21663	664;3358	20506	133547;133548;133549;133550	181206;181207;181208	181207			3	
GVVGPGPAAIAALGGGGAGPPVVGGGGGR	0	Unmodified	2281.2291	0.22911209	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				85.729	84.505	3	4.8471E-05	69268	160511_QHF_FH_JSI9i_3	49.25	41.161			1.1322	0.92157	NaN	1	1	Median	1.1322	0.92157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17876000	10069000	7806900	17876000	10069000	7806900	0	0	0	0	0	0	0	0	0	21664	1201	20507	133551	181209	181209			1	
GVVHDDMECSHYMK	1	Unmodified	1706.6851	0.68509651	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	24.1	24.087	3	0.0016577	19898	160511_QHF_FH_JSI12i_3	51.939	47.837			0.8971	0.85803	4.5602	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88751	0.8308	NaN	1	0	Median	0.9068	0.88615	NaN	1	0	Median	52547000	22989000	29557000	0	0	0	0	0	0	21857000	11024000	10833000	30689000	11965000	18724000	21665	1712	20508	133552;133553	181210	181210			1	
GVVHLATAAVLNAVWDLWAK	1	Unmodified	2133.1735	0.1734947	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		99.108	90.686	3	7.8432E-19	54333	160513_QHF_FH_JSI10Kac_6	138.66	129.84			0.8313	0.83219	59.87	4	0	Median	1.0308	0.89354	NaN	1	0	Median	0.67423	0.77506	NaN	1	0	Median	0.53325	0.518	91.676	2	0	Median	NaN	NaN	NaN	0	0	Median	315510000	168500000	147010000	75147000	39355000	35792000	110660000	71064000	39592000	129700000	58081000	71623000	0	0	0	21666	3234	20509	133554;133555;133556;133557	181211;181212;181213;181214	181214			2	
GVVHTVGGYMLYVATTFK	1	Unmodified	1942.0023	0.0022551915	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.474	78.329	3	1.5853E-05	44469	160513_QHF_FH_JSI10Kac_6	79.97	63.663			0.76487	0.90927	15.926	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75841	0.90927	NaN	1	0	Median	1.1849	1.1319	NaN	1	0	Median	0.76487	0.83038	NaN	1	0	Median	282920000	157140000	125780000	0	0	0	141510000	85953000	55555000	82034000	33856000	48178000	59378000	37330000	22048000	21667	4938	20510	133558;133559;133560;133561	181215;181216;181217;181218;181219	181218			5	
GVVHVYTR	0	Unmodified	929.5083	0.50830006	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	4	3	4	2	18.546	12.921	2;3	0.00028132	7865	160513_QHF_FH_JSI9Kac_6	89.355	74.49			1.0998	1.0334	22.505	13	2	Median	1.336	1.0834	25.669	4	1	Median	0.87641	1.0224	0.60155	3	0	Plateau	1.308	1.2708	31.554	4	1	Median	0.95685	1.0592	9.6192	2	0	Median	555310000	255020000	300290000	344370000	149000000	195370000	88847000	45869000	42978000	103940000	50283000	53656000	18153000	9870400	8282100	21668	2168	20511	133562;133563;133564;133565;133566;133567;133568;133569;133570;133571;133572;133573;133574	181220;181221;181222;181223;181224;181225;181226;181227;181228;181229;181230;181231;181232;181233;181234;181235;181236;181237	181227			18	
GVVIGTGENSEFGEVFK	1	Unmodified	1767.8679	0.86792978	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								2	1	3	2	78.089	77.246	2	8.045E-11	66724	160511_QHF_FH_JSI12i_2	172.11	163.11			0.8522	0.84095	16.877	7	7	Median	0.93316	0.81959	12.664	2	2	Median	0.53669	0.64623	NaN	1	1	Median	0.88695	0.89278	8.4588	2	2	Median	0.8264	0.91111	23.914	2	2	Median	183110000	102530000	80575000	35036000	15725000	19311000	25849000	17693000	8156300	55216000	32360000	22855000	67006000	36753000	30253000	21669	2142	20512	133575;133576;133577;133578;133579;133580;133581;133582	181238;181239;181240;181241;181242;181243;181244;181245;181246	181241			9	
GVVKAEK	2	Acetyl (K)	771.44905	0.44905385	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	1	0	0	1		By MS/MS	By matching		13	0						2					1	1		13.28	5.9005	2	0.015836	5294	160513_QHF_FH_JSI10Kac_3	82.452	33.891			0.75061	0.80539	30.506	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84231	0.99928	NaN	1	0	Median	0.66889	0.64912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18521000	9632800	8888000	0	0	0	8874700	4467000	4407700	9646000	5165800	4480200	0	0	0	21670	928	20513	133583;133584	181247	181247	682		1	
GVVLFPWQAR	0	Unmodified	1171.6502	0.65021327	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	2	3	4	84.369	80.619	2	6.8243E-12	69054	160511_QHF_FH_JSI9i_3	154.35	125.2			1.1098	0.96171	15.009	11	3	Median	1.1437	0.93045	14.545	3	0	Median	0.72722	0.86087	2.4511	2	0	Median	1.0463	1.0604	7.1827	3	1	Plateau	1.1253	1.2061	22.277	3	2	Median	662530000	335410000	327120000	172080000	75782000	96299000	152220000	88351000	63869000	170440000	83892000	86552000	167780000	87385000	80400000	21671	5534	20514	133585;133586;133587;133588;133589;133590;133591;133592;133593;133594;133595;133596	181248;181249;181250;181251;181252;181253;181254;181255;181256;181257;181258;181259;181260;181261;181262	181253			14	
GVVLRDPTLFSFLWVVDFPLFLPK	1	Unmodified	2804.5669	0.56693114	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.83	97.11	3	1.0691E-18	57445	160513_QHF_FH_JSI10Kac_6	116.35	104.82			0.87973	1.0463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87973	1.0463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160090000	78184000	81905000	0	0	0	160090000	78184000	81905000	0	0	0	0	0	0	21672	3119	20515	133597	181263;181264	181263			2	
GVVMHTFGGYANSK	1	Unmodified	1466.6976	0.69763375	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	40.847	35.836	2;3	8.2257E-25	19735	160513_QHF_FH_JSI11Kac_6	124.42	117.98			0.97555	0.92812	9.4201	16	0	Median	1.0699	0.89362	3.9669	4	0	Median	0.79336	0.93184	4.2045	4	0	Median	0.98998	0.93604	7.1484	4	0	Median	0.92444	1.0568	15.369	4	0	Median	1699100000	823970000	875170000	558010000	258530000	299490000	464280000	254250000	210030000	392110000	163480000	228630000	284730000	147710000	137020000	21673	3159	20516	133598;133599;133600;133601;133602;133603;133604;133605;133606;133607;133608;133609;133610;133611;133612;133613	181265;181266;181267;181268;181269;181270;181271;181272;181273;181274;181275;181276;181277;181278;181279;181280;181281;181282;181283;181284;181285;181286;181287;181288;181289;181290;181291;181292;181293	181275			28	
GVVMHTFGGYANSK	1	Oxidation (M)	1482.6925	0.69254837	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		12.3	5.87			2						5	4	2	1		32.558	25.182	2;3	0.0012663	13678	160513_QHF_FH_JSI9Kac_6	56.527	49.799			1.1744	1.0149	22.377	5	0	Median	1.5081	1.1914	23.78	3	0	Plateau	0.75059	0.88905	NaN	1	0	Median	1.3181	1.3035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63179000	29330000	33849000	51603000	22498000	29105000	7846400	4570400	3276000	3729800	2261900	1467900	0	0	0	21674	3159	20516	133614;133615;133616;133617;133618;133619;133620	181294;181295;181296;181297;181298;181299	181297		2207	4	
GVVMLNR	0	Unmodified	787.43744	0.4374433	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	26.455	26.12	2	9.3523E-06	21690	160511_QHF_FH_JSI12i_3	148.12	109.91			1.2012	1.1622	43.358	4	2	Median	NaN	NaN	NaN	0	0	Median	0.51675	0.59141	NaN	1	1	Median	1.315	1.2134	32.871	2	1	Median	1.3817	1.4044	NaN	1	0	Median	316430000	151200000	165230000	0	0	0	60079000	35242000	24836000	159820000	72351000	87471000	96533000	43607000	52926000	21675	1133	20517	133621;133622;133623;133624;133625	181300;181301;181302;181303;181304	181304			5	
GVVPFQAGSR	0	Unmodified	1016.5403	0.54032847	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.45		5	4					3		2	3	3	4	40.124	35.755	2	2.5408E-10	31541	160511_QHF_FH_JSI11i_3	140.5	121.77			0.93513	0.91886	18.397	8	1	Median	1.0926	0.87767	NaN	1	0	Median	0.7719	0.88704	4.5682	2	0	Median	1.109	1.0545	19.056	2	0	Median	0.89894	0.92328	27.218	3	1	Median	907090000	478090000	429000000	58013000	28673000	29340000	132600000	69558000	63039000	292470000	144040000	148430000	424010000	235820000	188190000	21676	3250	20518	133626;133627;133628;133629;133630;133631;133632;133633;133634;133635;133636;133637	181305;181306;181307;181308;181309;181310;181311;181312;181313;181314;181315;181316;181317	181306			13	
GVVPGGGLK	1	Unmodified	782.46504	0.46503826	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.63	4	3	3				3	1		2	4	4	4	27.381	24.324	2	0.0041358	20261	160511_QHF_FH_JSI12i_3	57.281	46.975			0.93612	0.99473	10.885	14	3	Median	1.4174	1.1915	1.5459	2	1	Median	0.7834	0.94486	7.1776	4	1	Median	0.95959	0.94767	13.197	4	1	Median	0.94291	1.0146	1.5832	4	0	Median	2163700000	1107100000	1056700000	428110000	194410000	233700000	537310000	286610000	250690000	897100000	481780000	415310000	301210000	144250000	156960000	21677	571	20519	133638;133639;133640;133641;133642;133643;133644;133645;133646;133647;133648;133649;133650;133651	181318;181319;181320;181321;181322;181323;181324;181325;181326;181327;181328;181329;181330;181331;181332	181332			15	
GVVPLAGTDGETTTQGLDGLSER	0	Unmodified	2272.1183	0.11828382	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	2.31	23	2				1				7	6	6	7	72.684	71.83	2;3	4.9145E-87	65609	160511_QHF_FH_JSI10i_1	289.61	282.89			1.0149	1.0328	10.176	24	0	Median	1.3335	1.0942	6.1655	6	0	Median	0.88194	1.0498	5.6352	5	0	Median	1.052	1.0135	5.8776	6	0	Median	0.91182	0.96301	16.832	7	0	Median	17546000000	8721900000	8823800000	4269200000	1936800000	2332400000	3969200000	2084200000	1885000000	5014200000	2402000000	2612200000	4293100000	2298900000	1994200000	21678	944	20520	133652;133653;133654;133655;133656;133657;133658;133659;133660;133661;133662;133663;133664;133665;133666;133667;133668;133669;133670;133671;133672;133673;133674;133675;133676;133677	181333;181334;181335;181336;181337;181338;181339;181340;181341;181342;181343;181344;181345;181346;181347;181348;181349;181350;181351;181352;181353;181354;181355;181356;181357;181358;181359;181360;181361;181362;181363;181364;181365;181366;181367;181368;181369;181370;181371;181372;181373;181374;181375;181376;181377;181378;181379	181360			47	
GVVPLAGTNGETTTQGLDGLSER	0	Unmodified	2271.1343	0.13426824	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	2.3	14	8	3			1				6	5	7	8	69.168	68.209	2;3	8.4753E-105	61150	160511_QHF_FH_JSI9i_1	345.3	331.62			1.0172	1.0614	11.196	23	6	Median	1.2933	1.0907	7.0411	4	1	Median	0.95367	1.1222	3.6539	5	2	Median	1.0003	0.97849	18.37	6	2	Median	1.035	1.0698	7.3173	8	1	Median	25236000000	11866000000	13370000000	4958800000	1965500000	2993300000	6340300000	3119300000	3220900000	6058900000	2944900000	3114000000	7877800000	3836100000	4041700000	21679	803	20521	133678;133679;133680;133681;133682;133683;133684;133685;133686;133687;133688;133689;133690;133691;133692;133693;133694;133695;133696;133697;133698;133699;133700;133701;133702;133703	181380;181381;181382;181383;181384;181385;181386;181387;181388;181389;181390;181391;181392;181393;181394;181395;181396;181397;181398;181399;181400;181401;181402;181403;181404;181405;181406;181407;181408;181409;181410;181411;181412;181413;181414;181415;181416;181417;181418;181419;181420;181421;181422;181423;181424;181425;181426;181427;181428;181429;181430	181407			51	
GVVQELQQAISK	1	Unmodified	1298.7194	0.71941505	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.83	4	8	6				1	5	1	6	8	6	5	70.507	67.069	2;3	4.545E-93	59983	160511_QHF_FH_JSI10i_2	257.92	232.11			0.92887	0.98511	33.863	25	2	Median	1.1517	0.95364	63.19	6	1	Median	0.86551	1.0548	21.481	8	1	Median	0.99418	0.96297	5.2307	6	0	Median	0.89001	0.998	16.075	5	0	Median	8824600000	4382400000	4442200000	1523900000	683390000	840490000	2350600000	1193100000	1157500000	4407800000	2208600000	2199200000	542360000	297370000	244990000	21680	1327	20522	133704;133705;133706;133707;133708;133709;133710;133711;133712;133713;133714;133715;133716;133717;133718;133719;133720;133721;133722;133723;133724;133725;133726;133727;133728	181431;181432;181433;181434;181435;181436;181437;181438;181439;181440;181441;181442;181443;181444;181445;181446;181447;181448;181449;181450;181451;181452;181453;181454;181455;181456;181457;181458;181459;181460;181461;181462;181463;181464;181465;181466;181467;181468;181469;181470;181471;181472;181473;181474;181475;181476;181477	181469			45	
GVVQLFNAVQK	1	Unmodified	1201.6819	0.68190733	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	65.893	65.074	2	1.8692E-29	54492	160511_QHF_FH_JSI10i_3	214.9	192.82			0.91831	0.87445	6.762	4	0	Median	0.98743	0.79043	NaN	1	0	Median	0.75097	0.87247	NaN	1	0	Median	0.92746	0.87643	NaN	1	0	Median	0.90925	0.93064	NaN	1	0	Median	927520000	471440000	456080000	150680000	60462000	90222000	119520000	64412000	55112000	262500000	140060000	122440000	394810000	206500000	188310000	21681	5577	20523	133729;133730;133731;133732;133733	181478;181479;181480;181481;181482;181483;181484;181485;181486;181487;181488;181489	181482			12	
GVVREENK	1	Unmodified	929.49304	0.49304393	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.7683	4.7683	2	0.0012886	2372	160511_QHF_FH_JSI11i_3	121.58	76.813			0.97421	0.94675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97421	0.94675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	584620000	270280000	314340000	0	0	0	0	0	0	584620000	270280000	314340000	0	0	0	21682	3411	20524	133734	181490	181490			1	
GVVSGEVER	0	Unmodified	930.47706	0.47705951	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	14.346	13.495	2	0.0031367	10695	160511_QHF_FH_JSI12i_2	71.692	18.526			0.68251	0.74042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68251	0.74042	NaN	1	1	Median	22748000	14623000	8124600	0	0	0	0	0	0	0	0	0	22748000	14623000	8124600	21683	2213	20525	133735	181491	181491			1	
GVVSLVAVHPSTVNPLGK	1	Unmodified	1773.0149	0.014868788	2512	Q14186	TFDP1	Transcription factor Dp-1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			72.074	70.618	3	0.001618	59198	160511_QHF_FH_JSI10i_3	48.711	44.163			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21684	2512	20526	133736	181492	181492			1	
GVVSMANNGPNTNGSQFFITYGK	1	Unmodified	2402.1325	0.1324941	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	77.665	77.109	3	2.479E-09	68826	160511_QHF_FH_JSI11i_3	88.036	83.279			0.96192	0.91556	9.8121	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.64324	0.75835	NaN	1	1	Median	0.96192	0.91556	NaN	1	0	Median	0.7801	0.79452	NaN	1	1	Median	94073000	39354000	54719000	0	0	0	26208000	12365000	13843000	41878000	17415000	24464000	25987000	9574800	16413000	21685	4674	20527	133737;133738;133739	181493;181494;181495;181496;181497	181494			5	
GVVVTLR	0	Unmodified	742.47012	0.47012364	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				32.876	31.459	2	0.027308	25674	160511_QHF_FH_JSI9i_3	56.122	37.316			0.97993	0.80947	NaN	1	1	Median	0.97993	0.80947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21234000	10737000	10497000	21234000	10737000	10497000	0	0	0	0	0	0	0	0	0	21686	5409	20528	133740	181498	181498			1	
GVVVVIK	1	Unmodified	712.48471	0.48471107	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	5.93	4	4	4		3	4	5	6	4	11	8	8	7	38.483	31.721	2	5.1047E-05	19671	160513_QHF_FH_JSI11Kac_6	126.05	65.04			0.95088	0.93866	21.03	33	3	Median	1.2118	1.0616	34.737	10	1	Median	0.79407	0.92869	9.9965	8	0	Median	0.96719	0.94611	12.843	8	1	Median	0.87339	0.98127	13.766	7	1	Median	15370000000	7519300000	7850900000	5746700000	2634700000	3112000000	3547800000	1896000000	1651800000	3910500000	1942600000	1967900000	2165100000	1045900000	1119200000	21687	1592	20529	133741;133742;133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754;133755;133756;133757;133758;133759;133760;133761;133762;133763;133764;133765;133766;133767;133768;133769;133770;133771;133772;133773;133774	181499;181500;181501;181502;181503;181504;181505;181506;181507;181508;181509;181510;181511;181512;181513;181514;181515;181516;181517;181518;181519;181520;181521;181522;181523;181524;181525;181526;181527;181528;181529;181530;181531;181532;181533;181534;181535;181536;181537;181538;181539;181540;181541;181542;181543;181544;181545;181546;181547;181548;181549;181550;181551;181552;181553;181554;181555;181556;181557;181558;181559;181560;181561;181562;181563;181564;181565;181566;181567;181568;181569;181570;181571;181572;181573;181574;181575;181576;181577;181578;181579;181580;181581;181582;181583;181584;181585;181586;181587;181588;181589;181590;181591;181592	181516			94	
GVWGTPGQVYDVEEVDVK	1	Unmodified	1975.9527	0.95272204	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	76.752	76.41	2	0.00034589	69237	160511_QHF_FH_JSI10i_1	83.182	65.517			0.53058	0.56165	38.551	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.67645	0.76413	NaN	1	1	Median	0.86383	0.83948	NaN	1	1	Median	0.41617	0.41283	NaN	1	1	Median	48716000	35375000	13341000	0	0	0	17929000	13076000	4852300	15081000	8945200	6135800	15707000	13353000	2353300	21688	2846	20530	133775;133776;133777	181593;181594;181595	181595			3	
GVWSELSK	1	Unmodified	904.46543	0.46543219	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	42.385	41.345	2	0.00093466	35300	160511_QHF_FH_JSI12i_3	96.253	60.759			1.1264	1.1669	10.006	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87678	1.0051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0345	1.1038	11.906	2	0	Median	531290000	246190000	285100000	0	0	0	49587000	24376000	25210000	0	0	0	481700000	221810000	259890000	21689	2517	20531	133778;133779;133780	181596;181597;181598	181598			3	
GVWSTLPVNEK	1	Unmodified	1228.6452	0.64518747	4175	Q96MU7	YTHDC1	YTH domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	55.658	55.537	2	9.4034E-06	49196	160511_QHF_FH_JSI11i_3	108.67	78.5			1.121	1.0985	4.5636	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.1345	NaN	1	0	Median	1.0554	1.0636	NaN	1	0	Median	147400000	74199000	73202000	0	0	0	0	0	0	64928000	34487000	30441000	82473000	39713000	42761000	21690	4175	20532	133781;133782	181599;181600;181601;181602	181600			4	
GVYGLLYYAGHGYENFGNSFMVPVDAPNPYR	0	Unmodified	3466.6081	0.60809705	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		93.3	86.359	3;4	1.3192E-91	50000	160513_QHF_FH_JSI10Kac_6	207.13	196.61			0.72251	0.86086	33.97	3	1	Median	NaN	NaN	NaN	0	0	Median	0.68105	0.79535	11.193	2	1	Median	1.4404	1.4095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	278140000	165400000	112740000	0	0	0	188770000	127340000	61436000	89368000	38059000	51309000	0	0	0	21691	5270	20533	133783;133784;133785	181603;181604;181605	181604			3	
GVYQFCFSNEFSTFSHK	1	Unmodified	2083.9098	0.90981137	5600	Q9Y3Q3	TMED3	Transmembrane emp24 domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4		1	1	4	81.723	76.769	3	2.043E-70	41191	160513_QHF_FH_JSI10Kac_6	210.09	200.81			0.8019	0.85136	22.814	5	3	Median	NaN	NaN	NaN	0	0	Median	0.63064	0.7586	NaN	1	0	Median	1.0496	1.0005	NaN	1	0	Median	0.8019	0.85136	28.935	3	3	Median	361560000	197140000	164420000	0	0	0	148250000	85756000	62492000	81656000	47385000	34270000	131650000	63999000	67655000	21692	5600	20534	133786;133787;133788;133789;133790;133791	181606;181607;181608;181609;181610;181611;181612	181611			7	
GVYQISK	1	Unmodified	793.4334	0.43340378	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	19.687	18.921	2	0.017903	15992	160511_QHF_FH_JSI9i_2	60.76	7.2056			1.0249	1.2875	19.922	4	0	Linear	1.3571	1.1426	NaN	1	0	Median	0.68844	0.84208	NaN	1	0	Median	1.2495	1.2999	NaN	1	0	Median	0.84074	0.91645	NaN	1	0	Median	234640000	95868000	138770000	61517000	18496000	43021000	38469000	22732000	15737000	78599000	27404000	51195000	56057000	27236000	28821000	21693	4848	20535	133792;133793;133794;133795	181613	181613			1	
GVYQISKQIK	2	Acetyl (K)	1204.6816	0.68157298	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		56.555	45.708	2	7.2563E-05	25151	160513_QHF_FH_JSI11Kac_5	102.07	85.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3873900	3873900	0	0	0	0	0	0	0	3873900	3873900	0	0	0	0	21694	4848	20536	133796	181614	181614	3249		1	
GVYQYHWQSHNVK	1	Unmodified	1644.7797	0.77972389	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	43.56	34.276	3;4	0.004075	17375	160513_QHF_FH_JSI10Kac_6	51.211	40.156			1.3332	1.283	2.2189	2	0	Median	1.5189	1.3033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1702	1.2631	NaN	1	0	Median	14648000	5458500	9190000	8863300	3634600	5228700	0	0	0	0	0	0	5785200	1824000	3961200	21695	2332	20537	133797;133798;133799;133800	181615;181616;181617;181618	181618			2	
GVYSEETLR	0	Unmodified	1052.5138	0.51383895	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.43	5	4	3				3	1		4	4	4	4	27.232	24.172	2	1.5261E-11	20280	160511_QHF_FH_JSI11i_2	163.9	145.91			1.0439	1.073	7.5255	15	2	Median	1.2236	1.0058	7.2449	4	0	Median	0.89628	1.0702	10.403	4	0	Median	1.0734	1.0843	4.5998	3	0	Median	1.0398	1.1764	5.1539	4	2	Linear	2050100000	1028800000	1021300000	360570000	166580000	194000000	451520000	249180000	202350000	580540000	287700000	292850000	657490000	325360000	332130000	21696	2780	20538	133801;133802;133803;133804;133805;133806;133807;133808;133809;133810;133811;133812;133813;133814;133815;133816	181619;181620;181621;181622;181623;181624;181625;181626;181627;181628;181629;181630;181631;181632;181633;181634;181635;181636;181637	181635			19	
GVYVFVK	1	Unmodified	810.46398	0.46397563	3160	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	55.867	46.105	2	0.0037406	25001	160513_QHF_FH_JSI11Kac_6	99.511	89.761			0.9742	0.94076	11.635	6	0	Median	1.1636	0.97346	2.8529	2	0	Median	0.87651	1.0394	21.294	2	0	Median	0.94264	0.92768	NaN	1	0	Median	0.80453	0.87785	NaN	1	0	Median	86060000	43016000	43044000	20570000	9406100	11164000	30798000	16165000	14633000	25526000	12637000	12889000	9166600	4808400	4358200	21697	3160	20539	133817;133818;133819;133820;133821;133822	181638;181639;181640;181641;181642;181643;181644;181645	181639			8	
GWAAAVTFHPR	0	Unmodified	1211.62	0.61997578	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	4	4	3	3	53.806	46.966	2;3	7.1408E-47	25664	160513_QHF_FH_JSI10Kac_6	180.07	163.43			1.0371	1.0085	15.03	14	1	Median	1.0879	0.89487	12.948	4	0	Median	0.88419	1.0446	7.3285	4	1	Linear	1.1408	1.0886	3.116	3	0	Median	1.0174	1.0778	15.676	3	0	Plateau	2687400000	1341800000	1345600000	495290000	213770000	281520000	1416600000	759530000	657080000	550640000	257650000	292990000	224840000	110860000	113990000	21698	241	20540	133823;133824;133825;133826;133827;133828;133829;133830;133831;133832;133833;133834;133835;133836	181646;181647;181648;181649;181650;181651;181652;181653;181654;181655;181656;181657;181658;181659;181660;181661;181662;181663;181664;181665;181666;181667;181668;181669;181670	181662			22	
GWALLHPGR	0	Unmodified	1005.5508	0.55083358	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	2	2	2	1	51.587	44.83	3	0.00021607	24478	160513_QHF_FH_JSI10Kac_6	86.833	52.025			1.0523	1.0718	15.339	6	0	Median	1.2446	1.0521	22.501	2	0	Median	0.82118	0.93054	19.327	2	0	Median	1.1079	1.0767	NaN	1	0	Median	1.0302	1.1157	NaN	1	0	Median	141490000	73747000	67745000	35988000	17222000	18765000	79442000	42965000	36478000	14281000	6789700	7491200	11780000	6769900	5010500	21699	430	20541	133837;133838;133839;133840;133841;133842;133843	181671;181672;181673;181674;181675;181676	181675			6	
GWALYCAGK	1	Unmodified	1024.48	0.4800364	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.5	6.02			2					1	3		3	1	2	53.896	47.135	2	0.00014996	25899	160513_QHF_FH_JSI10Kac_6	105.12	83.188			0.87537	0.96675	32.531	6	1	Median	NaN	NaN	NaN	0	0	Median	0.79399	0.90176	13.822	3	1	Median	0.74241	0.68034	NaN	1	0	Median	1.2915	1.3618	38.607	2	0	Median	290640000	137000000	153630000	0	0	0	71353000	40767000	30586000	57093000	31415000	25678000	162190000	64821000	97369000	21700	1433	20542	133844;133845;133846;133847;133848;133849	181677;181678;181679;181680;181681	181681			5	
GWAPTFLGYSMQGLCK	1	Unmodified	1814.8484	0.84839709	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.19		10	9						8	7	8	6	6	94.669	91.562	2;3	4.871E-88	44486	160513_QHF_FH_JSI11Kac_6	267.75	254.32			0.97576	1.0417	19.081	22	4	Median	1.2625	1.0843	16.635	6	2	Median	0.93602	1.0675	12.491	6	1	Median	0.8074	0.76298	11.46	6	1	Median	1.1159	1.1638	5.2053	4	0	Median	2479500000	1209300000	1270200000	263160000	117670000	145500000	672890000	338090000	334810000	880510000	476130000	404380000	662960000	277470000	385500000	21701	2146	20543	133850;133851;133852;133853;133854;133855;133856;133857;133858;133859;133860;133861;133862;133863;133864;133865;133866;133867;133868;133869;133870;133871;133872;133873;133874;133875;133876	181682;181683;181684;181685;181686;181687;181688;181689;181690;181691;181692;181693;181694;181695;181696;181697;181698;181699;181700;181701;181702;181703;181704;181705;181706;181707;181708;181709;181710;181711;181712;181713;181714;181715;181716;181717;181718;181719;181720;181721;181722;181723;181724;181725;181726;181727;181728	181699			46	
GWAPTFLGYSMQGLCK	1	Oxidation (M)	1830.8433	0.84331171	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6		5	3	3	82.584	77.014	2;3	7.0156E-24	41776	160513_QHF_FH_JSI10Kac_6	158.04	139.42			0.98659	1.059	29.392	8	4	Median	NaN	NaN	NaN	0	0	Median	1.0201	1.1739	17.989	2	1	Median	0.78348	0.75906	41.502	3	2	Median	1.0861	1.0849	27.365	3	1	Median	172160000	88089000	84070000	0	0	0	25968000	13759000	12209000	64414000	26409000	38004000	81777000	47921000	33857000	21702	2146	20543	133877;133878;133879;133880;133881;133882;133883;133884;133885;133886;133887	181729;181730;181731;181732;181733;181734;181735;181736;181737;181738;181739	181738		1790	11	
GWAPVFLDR	0	Unmodified	1059.5502	0.55016488	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	72.981	72.104	2	0.0030629	64524	160511_QHF_FH_JSI11i_3	61.962	23.724			0.86797	0.93419	10.71	6	0	Median	1.3771	1.0827	NaN	1	0	Median	0.81966	0.97812	7.0377	2	0	Median	0.98871	0.93776	NaN	1	0	Median	0.78328	0.8428	7.3603	2	0	Median	9145800000	4447900000	4697900000	1224700000	515650000	709050000	2332800000	1137800000	1195000000	2641000000	1353500000	1287500000	2947300000	1441000000	1506300000	21703	5689	20544	133888;133889;133890;133891;133892;133893;133894	181740;181741;181742;181743;181744;181745;181746;181747;181748	181741			9	
GWAPVFLDREQSISLMSVGFLLEKPDEAVVWR	1	Unmodified	3673.8967	0.89667449	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			97.307	91.586	4	6.8706E-21	53269	160513_QHF_FH_JSI10Kac_6	117.23	106.35			0.96788	1.1427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96788	1.1427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224980000	132420000	92557000	0	0	0	224980000	132420000	92557000	0	0	0	0	0	0	21704	5689	20545	133895	181749	181749			1	
GWDDLFNK	1	Unmodified	993.4556	0.45559579	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	67.366	66.661	2	0.00027047	58600	160511_QHF_FH_JSI9i_2	114.6	97.217			0.96461	0.98876	34.024	7	1	Median	1.0537	0.88161	NaN	1	0	Median	0.84973	1.0321	6.1872	2	0	Median	1.0296	1.0129	3.4112	2	0	Median	0.62497	0.66868	66.987	2	1	Median	527250000	296150000	231100000	64264000	32037000	32226000	132120000	71235000	60888000	159780000	83560000	76224000	171080000	109320000	61763000	21705	2517	20546	133896;133897;133898;133899;133900;133901;133902	181750;181751;181752;181753;181754;181755;181756;181757	181756			8	
GWDDLFNKVK	2	Acetyl (K)	1262.6295	0.62953741	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		85.743	75.234	2	0.0038436	39573	160513_QHF_FH_JSI11Kac_5	77.732	65.884			0.051204	0.049602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.051204	0.049602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2094200	1993800	100330	0	0	0	0	0	0	2094200	1993800	100330	0	0	0	21706	2517	20547	133903	181758	181758	2508		1	
GWDEALLTMSK	1	Unmodified	1249.6013	0.60127375	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	3	2	3	73.995	73.309	2	3.2289E-23	63142	160511_QHF_FH_JSI12i_2	175.93	160.78			1.5053	1.4405	20.542	8	3	Median	1.7931	1.5067	24.412	2	1	Median	1.3097	1.563	23.328	2	1	Median	1.4911	1.4839	38.527	2	0	Median	1.3183	1.4099	14.826	2	1	Median	970190000	455740000	514450000	169580000	60016000	109570000	286230000	153330000	132900000	274650000	119940000	154710000	239720000	122450000	117270000	21707	2158	20548	133904;133905;133906;133907;133908;133909;133910;133911;133912;133913;133914	181759;181760;181761;181762;181763;181764;181765;181766;181767;181768;181769;181770;181771;181772;181773;181774;181775;181776;181777;181778;181779;181780	181762			22	
GWDENVYYTVPLVR	0	Unmodified	1709.8413	0.8413211	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	84.744	83.682	2	2.2969E-07	74368	160511_QHF_FH_JSI10i_2	112.13	84.796			0.7641	0.79466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7641	0.79466	NaN	1	1	Median	6595000	4807300	1787700	0	0	0	0	0	0	0	0	0	6595000	4807300	1787700	21708	4336	20549	133915;133916;133917	181781;181782;181783	181783			3	
GWDLTVK	1	Unmodified	817.4334	0.43340378	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.32	4	4	2				3	4		4	5	4	4	52.504	47.506	2	0.0055967	40567	160511_QHF_FH_JSI12i_2	94.262	58.076			0.93486	0.97371	21.052	17	4	Median	0.8675	0.72421	16.519	4	1	Median	0.71773	0.87726	18.014	5	2	Median	1.0102	1.0222	13.306	4	1	Median	0.95245	1.0442	7.0463	4	0	Median	3103900000	1607900000	1495900000	544710000	304710000	240000000	773310000	434880000	338430000	1020500000	488970000	531500000	765380000	379380000	386000000	21709	828	20550	133918;133919;133920;133921;133922;133923;133924;133925;133926;133927;133928;133929;133930;133931;133932;133933;133934	181784;181785;181786;181787;181788;181789;181790;181791;181792;181793;181794;181795;181796;181797;181798;181799;181800;181801;181802;181803;181804;181805;181806;181807;181808;181809;181810;181811	181788			28	
GWDQGLLGMCEGEK	1	Unmodified	1578.6807	0.68066306	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	68.758	68.253	2	7.7266E-05	62021	160511_QHF_FH_JSI11i_1	115.57	91.283			2.0357	2.0158	18.339	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4176	2.2949	NaN	1	1	Median	1.7141	1.7707	NaN	1	1	Median	53830000	15776000	38054000	0	0	0	0	0	0	23009000	4674300	18335000	30821000	11102000	19719000	21710	1285	20551	133935;133936	181812;181813	181812			2	
GWEAFLNAPEANR	0	Unmodified	1473.7001	0.70007659	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	74.82	69.518	2	0.000254	61462	160511_QHF_FH_JSI12i_2	101.93	100.86			0.65751	0.67786	38.16	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.533	0.51755	NaN	1	1	Median	0.8111	0.88782	NaN	1	1	Median	40941000	25244000	15697000	0	0	0	0	0	0	21634000	14023000	7610800	19307000	11221000	8085800	21711	366	20552	133937;133938	181814;181815	181814			2	
GWEEGVAQMSVGQR	0	Unmodified	1532.7042	0.70417569	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.596	6	8	1							2	4	4	5	53.149	52.419	2;3	1.4483E-116	44746	160511_QHF_FH_JSI12i_2	268.58	241.1			0.9562	1.0208	18.299	15	1	Median	0.97886	0.8574	1.1907	2	0	Median	0.85946	1.0432	5.4663	4	0	Median	0.91836	0.9396	9.4225	4	0	Median	1.0885	1.1404	16.447	5	1	Median	1703500000	884490000	818990000	208220000	101220000	106990000	554680000	303910000	250770000	483520000	257360000	226160000	457070000	222000000	235070000	21712	2041	20553	133939;133940;133941;133942;133943;133944;133945;133946;133947;133948;133949;133950;133951;133952;133953	181816;181817;181818;181819;181820;181821;181822;181823;181824;181825;181826;181827;181828;181829;181830;181831;181832;181833;181834;181835	181819			17	
GWEEGVAQMSVGQR	0	Oxidation (M)	1548.6991	0.69909031	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		37.116	36.682	2	1.0098E-07	31314	160511_QHF_FH_JSI11i_2	100.72	84.584			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21713	2041	20553	133954	181836	181836		1707	1	
GWENHVEGQK	1	Unmodified	1182.5418	0.54178503	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.43	0.495		4	3								1	4	2	13.155	12.984	2;3	1.3534E-05	9759	160511_QHF_FH_JSI12i_3	80.979	67.388			0.9141	0.97576	20.2	5	2	Median	NaN	NaN	NaN	0	0	Median	0.87547	1.0688	NaN	1	0	Median	1.1749	1.1587	34.426	2	1	Median	0.93651	0.9438	4.7096	2	1	Median	214770000	111990000	102780000	0	0	0	38086000	18239000	19847000	67327000	31000000	36327000	109350000	62752000	46602000	21714	2517	20554	133955;133956;133957;133958;133959;133960;133961	181837;181838;181839;181840;181841	181840			5	
GWEYGITIPPDHKPK	2	Unmodified	1736.8886	0.88860564	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	52.856	52.62	4	0.0093021	45002	160511_QHF_FH_JSI12i_3	46.318	34.878			0.90328	0.91497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90328	0.91497	NaN	1	1	Median	34798000	15181000	19617000	0	0	0	0	0	0	0	0	0	34798000	15181000	19617000	21715	5161	20555	133962	181842	181842			1	
GWFDAEGQALDGVSISDLK	1	Unmodified	2006.9585	0.9585357	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.655	98.48	2	2.3572E-08	86380	160511_QHF_FH_JSI11i_2	107.37	94.171			0.6823	0.66905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6823	0.66905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11386000	8074000	3311900	0	0	0	0	0	0	11386000	8074000	3311900	0	0	0	21716	1293	20556	133963	181843	181843			1	
GWFLYTLGQR	0	Unmodified	1239.64	0.64004252	553	O75648	TRMU	Mitochondrial tRNA-specific 2-thiouridylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.496	75.254	2	2.0596E-70	41279	160513_QHF_FH_JSI11Kac_6	236.09	218.22			1.0044	1.0255	9.8583	4	0	Median	1.4211	1.217	NaN	1	0	Median	0.83446	0.98284	NaN	1	0	Median	1.0837	1.06	NaN	1	0	Median	0.93093	0.99213	NaN	1	0	Median	489350000	251090000	238260000	88661000	35803000	52858000	245490000	149890000	95604000	89883000	31958000	57925000	65318000	33441000	31877000	21717	553	20557	133964;133965;133966;133967	181844;181845;181846;181847;181848;181849;181850	181845			7	
GWFPFSYTR	0	Unmodified	1159.5451	0.5450795	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.122	75.526	2	0.016625	41507	160513_QHF_FH_JSI10Kac_6	50.04	32.132			1.0435	1.2293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0435	1.2293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45080000	19874000	25206000	0	0	0	45080000	19874000	25206000	0	0	0	0	0	0	21718	5478	20558	133968	181851	181851			1	
GWFPSSYTK	1	Unmodified	1071.5025	0.50254598	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	52.92	52.24	2	9.3602E-05	44641	160511_QHF_FH_JSI12i_3	94.302	89.986			1.0345	1.1241	6.1318	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89376	1.0728	8.6	2	0	Median	1.2447	1.1575	NaN	1	0	Median	1.1134	1.1083	NaN	1	0	Median	334770000	161700000	173060000	0	0	0	78827000	46222000	32605000	100400000	39624000	60781000	155530000	75855000	79678000	21719	5310	20559	133969;133970;133971;133972	181852;181853;181854;181855;181856;181857	181857			6	
GWFVYQQR	0	Unmodified	1082.5298	0.52976379	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	61.087	51.807	2	5.8223E-43	28128	160513_QHF_FH_JSI11Kac_6	203.58	189.91			0.88009	0.93263	9.7631	4	0	Median	1.2464	1.0646	NaN	1	0	Median	0.81479	0.9734	NaN	1	0	Median	0.94676	0.89356	NaN	1	0	Median	0.81812	0.85334	NaN	1	0	Median	1035200000	565050000	470150000	155130000	66869000	88260000	634000000	363970000	270030000	134710000	69258000	65448000	111360000	64954000	46410000	21720	1060	20560	133973;133974;133975;133976;133977	181858;181859;181860;181861;181862;181863;181864;181865;181866;181867	181859			10	
GWFYTLLVLATALFGQPPFK	1	Unmodified	2268.2347	0.23469797	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			14.3	2.36				2					4	1	5			106.17	99.065	2;3	2.7481E-57	59495	160513_QHF_FH_JSI10Kac_6	192.96	164.88			0.77897	0.94091	29.979	5	3	Median	1.1678	1.0136	NaN	1	0	Median	0.7737	0.92744	34.496	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	471130000	253120000	218010000	10247000	4428700	5818200	460880000	248690000	212190000	0	0	0	0	0	0	21721	1520	20561	133978;133979;133980;133981;133982;133983	181868;181869;181870;181871;181872;181873;181874	181872			7	
GWGDQLIWTQTYEEALYK	1	Unmodified	2200.0477	0.047685059	747	O95994	AGR2	Anterior gradient protein 2 homolog	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	92.309	82.867	2	1.1426E-31	44738	160513_QHF_FH_JSI12Kac_6	163.99	138.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21722	747	20562	133984	181875	181875			1	
GWGDSVGTPSER	0	Unmodified	1246.5578	0.55782903	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.25	29.934	2	0.0016311	25273	160511_QHF_FH_JSI12i_2	63.283	52.76			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21723	3509	20563	133985	181876	181876			1	
GWGMAFWIPFIYR	0	Unmodified	1642.8119	0.81187565	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.917	91.49	2	3.6064E-40	54536	160513_QHF_FH_JSI10Kac_6	191.05	176.8			1.0204	1.0306	3.0127	2	0	Median	1.2268	1.0528	NaN	1	0	Median	0.84874	1.0089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	333580000	177800000	155770000	118690000	57768000	60923000	214890000	120040000	94850000	0	0	0	0	0	0	21724	4288	20564	133986;133987	181877;181878;181879;181880	181880			4	
GWHTILIVEK	1	Unmodified	1194.6761	0.67609367	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	3	3	64.417	57.102	2;3	1.2529E-06	31282	160513_QHF_FH_JSI10Kac_6	142.92	130.7			1.1996	1.1855	12.933	10	0	Median	1.3849	1.1855	0.98539	2	0	Median	1.0288	1.2155	16.122	2	0	Median	1.3202	1.2859	22.577	3	0	Median	1.0662	1.1613	9.1691	3	0	Median	595750000	306000000	289740000	73765000	33556000	40209000	201420000	107580000	93838000	129060000	63335000	65726000	191500000	101530000	89972000	21725	3716	20565	133988;133989;133990;133991;133992;133993;133994;133995;133996;133997	181881;181882;181883;181884;181885;181886;181887;181888;181889;181890;181891;181892;181893;181894;181895;181896;181897	181896			15	
GWIDLQR	0	Unmodified	886.4661	0.4661009	2482	Q13951	CBFB	Core-binding factor subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	49.351	48.806	2	0.01534	41836	160511_QHF_FH_JSI12i_2	64.803	42.672			1.1085	1.148	12.612	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.268	1.1681	NaN	1	0	Median	0.98158	1.0339	14.797	2	0	Median	363120000	169100000	194010000	0	0	0	0	0	0	137030000	58961000	78066000	226090000	110140000	115950000	21726	2482	20566	133998;133999;134000	181898;181899	181899			2	
GWIDWAASK	1	Unmodified	1032.5029	0.50288033	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	64.602	63.78	2	1.9956E-06	55242	160511_QHF_FH_JSI12i_3	128.69	109.96			0.99015	1.0147	6.0608	4	0	Median	1.3128	1.0467	NaN	1	0	Median	0.9225	1.0389	NaN	1	0	Median	1.0628	0.9911	NaN	1	0	Median	0.889	0.91741	NaN	1	0	Median	768700000	392550000	376150000	127900000	47935000	79965000	106770000	57110000	49663000	217920000	112200000	105720000	316110000	175310000	140800000	21727	5288	20567	134001;134002;134003;134004	181900;181901;181902;181903;181904;181905;181906	181906			7	
GWIPGNEENK	1	Unmodified	1142.5356	0.53563702	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	2	2									2	2		32.696	32.218	2	1.6316E-05	28892	160511_QHF_FH_JSI10i_1	99.442	72.188			2.4531	2.7308	67.746	4	3	Median	NaN	NaN	NaN	0	0	Median	2.3243	2.8169	81.764	2	1	Median	2.6409	2.6092	83.812	2	2	Median	NaN	NaN	NaN	0	0	Median	564310000	162160000	402140000	0	0	0	263760000	79119000	184640000	300540000	83046000	217500000	0	0	0	21728	5161	20568	134005;134006;134007;134008	181907;181908;181909;181910;181911	181909			5	
GWLDQEDQEAPLQK	1	Unmodified	1655.7791	0.77911477	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.387	55.993	2	8.6989E-05	50546	160511_QHF_FH_JSI10i_1	113.63	86.3			0.62058	0.69819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62058	0.69819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34247000	22515000	11732000	0	0	0	34247000	22515000	11732000	0	0	0	0	0	0	21729	3419	20569	134009	181912;181913	181913			2	
GWLHPNDK	1	Unmodified	965.47191	0.47191456	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	16.328	16.38	2;3	0.0026039	13080	160511_QHF_FH_JSI12i_3	49.418	30.978			1.1274	1.145	56.639	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1274	1.145	56.639	2	0	Median	187650000	80946000	106700000	0	0	0	0	0	0	0	0	0	187650000	80946000	106700000	21730	1319	20570	134010;134011;134012	181914;181915;181916	181915			2	
GWLKSNVSDAVAQSTR	1	Acetyl (K)	1759.8853	0.88531118	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.8	0.433								1	3		1	3		72.856	63.597	2;3	1.8775E-103	34382	160513_QHF_FH_JSI11Kac_6	253.15	217.74			0.33646	0.32964	70.121	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0822	1.2596	NaN	1	0	Median	0.33281	0.32821	9.295	3	0	Median	NaN	NaN	NaN	0	0	Median	71824000	52042000	19782000	0	0	0	11876000	4907900	6967900	59948000	47134000	12814000	0	0	0	21731	1908	20571	134013;134014;134015;134016	181917;181918;181919;181920	181917	1908		4	
GWLQSLVQDTK	1	Unmodified	1273.6667	0.6666512	3488	Q8IZU8	DSEL	Dermatan-sulfate epimerase-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.981	72.687	2	0.0038174	63134	160511_QHF_FH_JSI12i_3	67.113	47.351			1.7302	1.7408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7302	1.7408	NaN	1	1	Median	36011000	14245000	21766000	0	0	0	0	0	0	0	0	0	36011000	14245000	21766000	21732	3488	20572	134017	181921	181921			1	
GWLRDPSASPGDAGEQAIR	0	Unmodified	1981.9606	0.96060139	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			48.913	47.534	3	5.8485E-14	39698	160511_QHF_FH_JSI10i_3	150.7	138.04			1.0091	0.95192	14.741	3	1	Median	1.1896	0.95192	NaN	1	0	Median	0.90632	1.0778	18.214	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	436820000	205390000	231430000	239840000	110080000	129770000	196980000	95311000	101670000	0	0	0	0	0	0	21733	1139	20573	134018;134019;134020	181922;181923;181924;181925;181926;181927;181928;181929	181923			8	
GWLTINNISLMK	1	Oxidation (M)	1404.7435	0.74352131	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	81.458	81.345	2	0.0024567	70670	160511_QHF_FH_JSI12i_3	83.397	71.907			10.059	9.7984	73.638	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.2594	5.8213	NaN	1	1	Median	16.163	16.493	NaN	1	1	Median	576660000	42830000	533830000	0	0	0	0	0	0	157380000	27967000	129410000	419270000	14862000	404410000	21734	1711	20574	134021;134022	181930;181931;181932	181931		1390	3	
GWLTINNISLMK	1	Unmodified	1388.7486	0.74860669	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4	2	2	4	2	90.042	86.089	2	6.0653E-53	80187	160511_QHF_FH_JSI12i_3	211.78	195.15			1.0076	0.94755	14.208	9	3	Median	1.1219	0.9381	1.4178	2	0	Median	0.95244	1.1331	5.3538	2	1	Median	1.049	0.9841	17.065	3	2	Median	0.81617	0.85652	13.671	2	0	Median	1147700000	559430000	588230000	195130000	91139000	103990000	283890000	143860000	140030000	366990000	166990000	200000000	301650000	157440000	144210000	21735	1711	20574	134023;134024;134025;134026;134027;134028;134029;134030;134031;134032	181933;181934;181935;181936;181937;181938;181939;181940;181941;181942;181943;181944;181945;181946;181947;181948;181949;181950;181951	181948			19	
GWLVDLLNK	1	Unmodified	1056.5968	0.59678072	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	92.854	92.361	2	2.5091E-16	80282	160511_QHF_FH_JSI12i_3	174.27	0			1.1446	1.1217	12.917	5	0	Median	1.189	0.98147	NaN	1	0	Median	1.0352	1.2281	18.172	2	0	Median	1.1869	1.1411	NaN	1	0	Median	1.1067	1.1217	NaN	1	0	Median	484040000	234980000	249060000	69123000	32306000	36817000	76515000	38995000	37520000	169340000	82426000	86917000	169060000	81257000	87803000	21736	3921	20575	134033;134034;134035;134036;134037	181952;181953;181954;181955;181956;181957;181958;181959;181960;181961;181962	181961			10	
GWLYYEAGQR	0	Unmodified	1241.5829	0.58292157	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.24			2					3	4	2	3	2	2	58.465	51.603	2	1.4708E-24	28281	160513_QHF_FH_JSI10Kac_6	205.57	174.5			1.1246	1.0407	26.375	7	0	Median	1.1246	0.97183	NaN	1	0	Median	0.72968	0.84732	29.069	2	0	Median	1.4882	1.3803	25.453	2	0	Median	1.1096	1.1321	12.001	2	0	Median	417360000	197700000	219660000	45773000	22428000	23344000	121260000	67973000	53289000	139870000	53455000	86412000	110460000	53842000	56614000	21737	2636	20576	134038;134039;134040;134041;134042;134043;134044;134045;134046	181963;181964;181965;181966;181967;181968;181969;181970;181971;181972	181971			8	
GWNILTNSEK	1	Unmodified	1160.5826	0.58258722	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	53.709	53.032	2	8.3318E-44	45469	160511_QHF_FH_JSI12i_3	215.38	182.54			1.0043	1.0406	8.0632	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9235	1.1051	10.05	2	0	Median	1.0938	1.052	NaN	1	0	Median	0.98537	0.98184	NaN	1	0	Median	654990000	336270000	318720000	0	0	0	142580000	86509000	56073000	176890000	71005000	105890000	335520000	178760000	156760000	21738	1306	20577	134047;134048;134049;134050	181973;181974;181975;181976	181976			3	
GWNWGTVK	1	Unmodified	946.4661	0.4661009	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		1	4						2	1	2	1	3	52.301	48.991	2	0.00012323	42938	160511_QHF_FH_JSI11i_3	127.12	99.593			0.90189	0.94655	7.3499	7	1	Median	1.2254	0.97956	NaN	1	0	Median	0.78769	0.92155	0.042112	2	1	Median	1.0168	0.94655	NaN	1	0	Median	0.90189	0.98211	12.128	3	0	Median	1617400000	796270000	821170000	204670000	86344000	118330000	270780000	138220000	132560000	390630000	213630000	177000000	751370000	358080000	393280000	21739	2277	20578	134051;134052;134053;134054;134055;134056;134057	181977;181978;181979;181980;181981;181982;181983;181984;181985;181986;181987;181988;181989;181990;181991	181978			15	
GWNWVDVVK	1	Unmodified	1101.5607	0.56072956	3076	Q6NW29	RWDD4	RWD domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.722	78.467	2	0.00018662	68202	160511_QHF_FH_JSI12i_3	86.136	79.686			1.384	1.3493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.384	1.3493	NaN	1	0	Median	30734000	14317000	16417000	0	0	0	0	0	0	0	0	0	30734000	14317000	16417000	21740	3076	20579	134058	181992	181992			1	
GWNYILEK	1	Unmodified	1021.5233	0.52328142	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	2	3	60.276	58.309	2	0.00018793	49954	160511_QHF_FH_JSI12i_3	121.62	96.696			1.2079	1.2073	68.824	7	4	Median	1.7661	1.5031	NaN	1	1	Median	0.18963	0.23802	NaN	1	0	Median	1.2721	1.249	21.203	2	1	Median	1.4472	1.5304	28.653	3	2	Plateau	1074800000	471600000	603150000	197160000	67797000	129370000	105880000	89924000	15957000	414020000	153460000	260560000	357690000	160420000	197260000	21741	1566	20580	134059;134060;134061;134062;134063;134064;134065	181993;181994;181995;181996;181997;181998;181999;182000;182001	181999			9	
GWPEVWAGSVGR	0	Unmodified	1299.636	0.63601977	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	71.7	70.909	2	0.0018604	59504	160511_QHF_FH_JSI10i_3	59.426	49.473			0.58805	0.66438	30.426	3	1	Median	NaN	NaN	NaN	0	0	Median	0.58805	0.66438	NaN	1	0	Median	0.54553	0.57781	NaN	1	1	Median	1.0378	1.0348	NaN	1	0	Median	138900000	73693000	65204000	0	0	0	23162000	14577000	8584900	38108000	23715000	14392000	77627000	35400000	42226000	21742	2899	20581	134066;134067;134068	182002;182003;182004	182002			2	
GWPLELLCEK	1	Unmodified	1243.6271	0.62709457	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	90.897	90.279	2	0.00037669	79498	160511_QHF_FH_JSI11i_2	76.465	0			0.84474	1.1587	20.613	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98686	1.2165	NaN	1	0	Median	0.81424	0.83286	NaN	1	0	Median	1.0631	1.1587	NaN	1	1	Median	175450000	94287000	81159000	0	0	0	47116000	27599000	19517000	90189000	50284000	39905000	38140000	16404000	21736000	21743	2325	20582	134069;134070;134071	182005;182006;182007;182008;182009	182008			5	
GWPLYLSTK	1	Unmodified	1063.5702	0.57023162	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.55	2	4	4					2	4	4	4	5	3	70.964	67.241	2	5.0724E-06	60127	160511_QHF_FH_JSI11i_3	117.04	59.477			1.0778	1.0126	24.544	15	4	Median	1.2408	1.0367	16.544	4	0	Linear	0.89215	1.056	19.072	4	2	Median	0.87918	0.87822	21.624	4	2	Median	1.1985	1.2187	28.077	3	0	Median	4972900000	2437700000	2535200000	701130000	312920000	388210000	891510000	454170000	437330000	1665000000	840030000	824950000	1715300000	830550000	884700000	21744	576	20583	134072;134073;134074;134075;134076;134077;134078;134079;134080;134081;134082;134083;134084;134085;134086;134087	182010;182011;182012;182013;182014;182015;182016;182017;182018;182019;182020;182021;182022;182023;182024;182025;182026;182027;182028;182029;182030;182031;182032;182033;182034;182035;182036;182037;182038;182039;182040;182041;182042	182011			33	
GWPMYAQLLIDLFK	1	Unmodified	1693.8902	0.89018555	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101.39	92.212	2	1.0796E-10	53355	160513_QHF_FH_JSI9Kac_6	120.96	105.42			0.70135	0.60669	NaN	1	0	Median	0.70135	0.60669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48125000	29201000	18924000	48125000	29201000	18924000	0	0	0	0	0	0	0	0	0	21745	21	20584	134088	182043;182044	182044			2	
GWQDVTATSAYK	1	Unmodified	1325.6252	0.62518031	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	6.09	5	3					3	1		4	3	2	3	48.811	44.99	2	2.8328E-14	40295	160511_QHF_FH_JSI9i_1	134.57	120.97			0.8663	0.96874	55.989	10	6	Median	0.74718	0.62304	108.83	2	2	Median	0.80723	0.94966	53.907	3	2	Median	1.0363	1.0117	5.2392	2	0	Median	0.8955	0.96263	62.174	3	2	Median	2185700000	1139300000	1046300000	428770000	192400000	236370000	495140000	275230000	219910000	709530000	380380000	329140000	552210000	291330000	260890000	21746	1858	20585	134089;134090;134091;134092;134093;134094;134095;134096;134097;134098;134099;134100	182045;182046;182047;182048;182049;182050;182051;182052;182053;182054;182055;182056;182057;182058;182059	182055			15	
GWQDVTATSAYKK	2	Unmodified	1453.7201	0.72014333	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.26	1	6	8					1	6	6	5	8	3	40.93	37.657	2;3	1.0484E-22	31274	160511_QHF_FH_JSI10i_3	145	130.97			0.99339	0.99511	24.496	20	1	Median	0.97305	0.81482	22.264	5	0	Median	0.86906	0.99523	26.245	5	0	Median	1.0142	0.99008	29.368	7	1	Median	1.1504	1.1882	9.0308	3	0	Plateau	5426100000	2668800000	2757300000	415860000	239420000	176440000	655990000	335870000	320120000	1284100000	709640000	574480000	3070200000	1383900000	1686300000	21747	1858	20586	134101;134102;134103;134104;134105;134106;134107;134108;134109;134110;134111;134112;134113;134114;134115;134116;134117;134118;134119;134120;134121;134122	182060;182061;182062;182063;182064;182065;182066;182067;182068;182069;182070;182071;182072;182073;182074;182075;182076;182077;182078;182079;182080;182081;182082;182083;182084;182085;182086;182087;182088;182089;182090;182091;182092;182093;182094	182064			34	
GWSFLLGK	1	Unmodified	906.49634	0.49633839	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	79.917	75.417	2	0.00045611	67770	160511_QHF_FH_JSI12i_3	117.17	89.644			1.0544	1.0471	5.5541	8	0	Median	1.2753	1.058	0.49308	2	0	Median	0.89277	1.0385	5.9277	2	0	Median	1.0839	1.0261	1.9005	2	0	Median	1.0544	1.0999	11.031	2	0	Median	344700000	176400000	168290000	79859000	38289000	41570000	71979000	40532000	31447000	85097000	41734000	43363000	107760000	55850000	51912000	21748	5334	20587	134123;134124;134125;134126;134127;134128;134129;134130	182095;182096;182097;182098;182099;182100;182101;182102;182103;182104;182105;182106;182107;182108	182106			14	
GWSMSEQSEESVGGR	0	Unmodified	1624.6787	0.6787488	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		38.87	38.22	2	8.5972E-13	32680	160511_QHF_FH_JSI11i_2	197.31	174			1.1921	1.2217	42.953	3	3	Plateau	0.61286	0.53739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0733	1.0812	20.767	2	2	Median	NaN	NaN	NaN	0	0	Median	68552000	32772000	35780000	17701000	8626200	9075200	0	0	0	50850000	24146000	26704000	0	0	0	21749	5293	20588	134131;134132;134133	182109;182110;182111	182110			3	
GWTLMHPGR	0	Unmodified	1053.5178	0.51781889	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			42.098	38.227	3	0.00043719	21103	160513_QHF_FH_JSI10Kac_6	78.113	73.647			0.63992	0.70823	18.566	3	1	Plateau	0.8173	0.66303	NaN	1	1	Median	0.70712	0.81608	20.046	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57159000	28661000	28498000	18483000	9267100	9215600	38676000	19394000	19282000	0	0	0	0	0	0	21750	2194	20589	134134;134135;134136	182112;182113;182114;182115	182114			4	
GWTQWYDLTEDGTRPQAMT	0	Unmodified	2254.9953	0.99533191	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	2	2	86.991	86.427	2	2.5961E-23	76859	160511_QHF_FH_JSI10i_2	142.57	128.01			1.2922	1.3292	33.109	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78676	0.76442	NaN	1	1	Median	1.3083	1.3551	2.728	2	2	Median	29348000	10549000	18799000	0	0	0	0	0	0	9254100	4615500	4638600	20094000	5933800	14161000	21751	6	20590	134137;134138;134139;134140;134141	182116;182117;182118;182119;182120;182121	182119			6	
GWVHDSIDYR	0	Unmodified	1246.5731	0.57308516	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	37.036	36.873	2;3	0.0019149	31327	160511_QHF_FH_JSI12i_3	46.64	34.009			1.1013	1.0971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1013	1.0971	NaN	1	1	Median	28013000	12558000	15455000	0	0	0	0	0	0	0	0	0	28013000	12558000	15455000	21752	5330	20591	134142;134143	182122;182123	182122			2	
GWVLGPNNYYSFASQQQKPEDTTIPSTELAK	2	Unmodified	3468.6838	0.68376441	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	3	2		88.589	87.9	3;4	4.8756E-17	78474	160511_QHF_FH_JSI11i_3	95.255	90.496			0.73778	0.74795	102.84	8	4	Median	1.1891	0.96751	154.51	3	1	Plateau	0.72915	0.9036	104.92	3	2	Median	0.5396	0.51598	44.782	2	1	Median	NaN	NaN	NaN	0	0	Median	329780000	219610000	110180000	104440000	77493000	26947000	104140000	73649000	30489000	121210000	68467000	52740000	0	0	0	21753	1627	20592	134144;134145;134146;134147;134148;134149;134150;134151	182124;182125;182126;182127;182128;182129;182130;182131;182132;182133;182134;182135;182136;182137;182138;182139	182126			16	
GWVNTLVGGQK	1	Unmodified	1157.6193	0.61930707	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		1	4						2	1	3	1	2	53.608	51.483	2	6.1746E-48	43019	160511_QHF_FH_JSI10i_3	219.8	202.42			1.046	1.0093	15.25	6	2	Median	1.2296	0.98659	NaN	1	0	Median	0.69644	0.99455	20.025	3	2	Plateau	1.0927	1.0325	NaN	1	0	Median	1.1102	1.1552	NaN	1	0	Median	1236700000	590960000	645780000	152310000	67640000	84666000	294110000	153730000	140380000	269450000	127980000	141470000	520880000	241610000	279270000	21754	1060	20593	134152;134153;134154;134155;134156;134157;134158	182140;182141;182142;182143;182144;182145;182146;182147;182148;182149	182142			10	
GWWYAHFDGPWIAR	0	Unmodified	1760.8212	0.82119478	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.483	77.63	3	4.8153E-12	43948	160513_QHF_FH_JSI10Kac_6	130.07	120.5			0.90921	0.89976	17.035	3	0	Median	0.91396	0.77349	NaN	1	0	Median	0.90921	1.0867	NaN	1	0	Median	0.90146	0.89976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	783640000	394970000	388670000	142600000	66405000	76196000	603760000	308610000	295150000	37281000	19958000	17323000	0	0	0	21755	5420	20594	134159;134160;134161;134162	182150;182151;182152;182153	182153			4	
GYADIVQLLLAK	1	Unmodified	1302.7547	0.75473792	3898	Q92882	OSTF1	Osteoclast-stimulating factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	2	2	102.1	102.01	2	5.5221E-78	88836	160511_QHF_FH_JSI12i_3	242.83	223.74			0.92217	0.96801	15.154	8	1	Median	1.2944	1.1002	2.3876	2	0	Median	0.76254	0.91413	10.333	2	0	Median	0.99839	0.96801	0.67036	2	0	Median	0.73677	0.78932	18.897	2	1	Median	2675500000	1433100000	1242300000	268720000	101190000	167540000	519700000	301940000	217760000	560540000	296040000	264500000	1326500000	733970000	592520000	21756	3898	20595	134163;134164;134165;134166;134167;134168;134169;134170;134171	182154;182155;182156;182157;182158;182159;182160;182161;182162;182163;182164;182165;182166;182167;182168	182168			15	
GYADSPSK	1	Unmodified	823.3712	0.37119746	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	7.4011	4.76	2	0.0017927	3118	160513_QHF_FH_JSI11Kac_3	95.909	24.997			0.95594	1.0224	11.381	9	1	Median	1.2573	0.99135	NaN	1	0	Median	0.8876	1.0356	11.297	3	1	Median	1.0527	1.0224	11.692	3	0	Median	0.9635	1.0435	21.516	2	0	Median	4031900000	1863300000	2168500000	1085200000	445210000	639960000	1062600000	520670000	541960000	928960000	398080000	530880000	955100000	499370000	455730000	21757	2169	20596	134172;134173;134174;134175;134176;134177;134178;134179;134180	182169;182170;182171;182172;182173;182174;182175;182176	182171			8	
GYAEVVVASENSVHK	1	Unmodified	1587.7893	0.78928553	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.41		8	4					5	3	5	6	5	4	45.521	41.215	2;3	2.0193E-11	22250	160513_QHF_FH_JSI9Kac_5	126.1	117.5			0.96101	0.92602	43.301	17	2	Median	0.97974	0.84049	5.4057	4	0	Median	0.72085	0.8886	39.826	5	1	Median	1.1243	1.1194	45.205	4	0	Median	1.1053	1.1888	53.368	4	1	Median	1130400000	511240000	619190000	153830000	66684000	87150000	224090000	122270000	101820000	405520000	172100000	233410000	346990000	150190000	196810000	21758	3553	20597	134181;134182;134183;134184;134185;134186;134187;134188;134189;134190;134191;134192;134193;134194;134195;134196;134197;134198;134199;134200	182177;182178;182179;182180;182181;182182;182183;182184;182185;182186;182187;182188;182189;182190;182191;182192;182193;182194;182195;182196;182197;182198;182199;182200;182201;182202	182183			25	
GYAFIEFASFEDAK	1	Unmodified	1593.7351	0.73512469	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.15		11	5	2	3				8	6	6	9	8	92.339	88.424	2;3	1.3743E-98	81884	160511_QHF_FH_JSI12i_2	264.61	246.34			1.0512	0.99954	22.987	27	4	Median	1.1028	0.93165	17.048	6	2	Median	0.74921	0.90857	30.999	6	0	Median	0.97808	0.98056	20.846	8	1	Median	1.0951	1.1614	13.936	7	1	Median	5058500000	2453100000	2605400000	984700000	421610000	563080000	1184500000	686640000	497860000	1498700000	697730000	800950000	1390700000	647120000	743530000	21759	1154	20598	134201;134202;134203;134204;134205;134206;134207;134208;134209;134210;134211;134212;134213;134214;134215;134216;134217;134218;134219;134220;134221;134222;134223;134224;134225;134226;134227;134228;134229	182203;182204;182205;182206;182207;182208;182209;182210;182211;182212;182213;182214;182215;182216;182217;182218;182219;182220;182221;182222;182223;182224;182225;182226;182227;182228;182229;182230;182231;182232;182233;182234;182235;182236;182237;182238;182239;182240;182241;182242;182243;182244;182245;182246;182247;182248;182249;182250;182251;182252;182253;182254;182255;182256;182257;182258;182259;182260;182261;182262;182263;182264;182265	182206			62	
GYAFIEYEHER	0	Unmodified	1412.6361	0.63607935	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.77		8	4						9	3	4	6	8	47.741	43.731	2;3	7.1318E-10	22839	160513_QHF_FH_JSI12Kac_6	119.76	116.9			1.0044	1.0035	13.944	18	5	Median	1.2443	1.0882	13.255	3	0	Plateau	0.80282	0.96477	15.182	4	2	Median	1.1612	1.1901	11.896	5	1	Median	0.89905	0.98062	16.328	6	2	Median	1504400000	732650000	771760000	150970000	74499000	76469000	280300000	152940000	127370000	559870000	263260000	296600000	513270000	241950000	271320000	21760	910	20599	134230;134231;134232;134233;134234;134235;134236;134237;134238;134239;134240;134241;134242;134243;134244;134245;134246;134247;134248;134249;134250	182266;182267;182268;182269;182270;182271;182272;182273;182274;182275;182276;182277;182278;182279;182280;182281;182282;182283;182284;182285;182286;182287;182288;182289;182290;182291;182292	182287			26	
GYAFITFCGK	1	Unmodified	1162.5481	0.54811597	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.717	66.033	2	1.813E-24	34617	160513_QHF_FH_JSI12Kac_6	178.83	160.39			0.98984	0.99222	17.288	4	0	Median	1.0669	0.93403	NaN	1	0	Median	0.97958	1.1819	NaN	1	0	Median	0.82312	0.78908	NaN	1	0	Median	1.0002	1.054	NaN	1	0	Median	1456600000	711600000	744950000	333350000	147200000	186150000	286040000	142650000	143390000	588080000	312970000	275100000	249080000	108780000	140300000	21761	326	20600	134251;134252;134253;134254	182293;182294;182295;182296;182297;182298;182299;182300	182298			8	
GYAFNHSADFETVR	0	Unmodified	1612.727	0.72701962	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.92		7	9						3	4	6	5	4	47.104	44.835	2;3	3.2928E-42	39380	160511_QHF_FH_JSI9i_2	211.46	201.51			1.086	1.0042	21.389	18	3	Median	1.2438	1.0688	11.946	4	0	Median	1.1339	1.3275	15.148	6	2	Median	0.95823	0.94881	2.8576	4	0	Median	0.90183	0.94218	36.917	4	1	Median	3462800000	1719800000	1743000000	567480000	243480000	324000000	803590000	407740000	395850000	1145900000	589580000	556350000	945770000	479000000	466770000	21762	1940	20601	134255;134256;134257;134258;134259;134260;134261;134262;134263;134264;134265;134266;134267;134268;134269;134270;134271;134272;134273	182301;182302;182303;182304;182305;182306;182307;182308;182309;182310;182311;182312;182313;182314;182315;182316;182317;182318;182319;182320;182321;182322;182323;182324;182325;182326;182327;182328;182329;182330;182331;182332;182333;182334;182335	182315			33	
GYAFVHFETQEAADK	1	Unmodified	1711.7842	0.78420015	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.74		7	4						8	4	4	5	6	57.272	52.969	2;3	9.2955E-98	45363	160511_QHF_FH_JSI12i_3	257.19	214.45			1.0684	1.0271	17.048	19	1	Median	1.3159	1.1371	22.314	4	0	Median	0.84452	1.0304	19.097	4	0	Median	1.0885	1.0271	20.152	5	0	Median	1.0192	1.0326	11.83	6	1	Median	4627600000	2351200000	2276400000	635670000	305830000	329840000	855460000	440660000	414790000	1206800000	550340000	656450000	1929700000	1054400000	875320000	21763	2385	20602	134274;134275;134276;134277;134278;134279;134280;134281;134282;134283;134284;134285;134286;134287;134288;134289;134290;134291;134292	182336;182337;182338;182339;182340;182341;182342;182343;182344;182345;182346;182347;182348;182349;182350;182351;182352;182353;182354;182355;182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373	182363			38	
GYAFVMYCHK	1	Oxidation (M)	1290.5525	0.55254942	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	1	4	2	2	44.953	35.641	2;3	3.2315E-05	19688	160513_QHF_FH_JSI10Kac_6	96.331	93.986			1.0711	0.89254	29.092	5	0	Median	1.0711	0.89254	NaN	1	0	Median	0.69822	0.82849	NaN	1	0	Median	0.81575	0.80375	NaN	1	0	Median	1.2984	1.4183	6.8058	2	0	Median	82248000	41382000	40866000	16661000	7404300	9256600	18093000	11633000	6459900	15526000	8338400	7187700	31969000	14007000	17962000	21764	4	20603	134293;134294;134295;134296;134297;134298;134299;134300;134301	182374;182375;182376;182377;182378;182379;182380;182381;182382;182383;182384;182385;182386	182382		1	13	
GYAFVMYCHK	1	Unmodified	1274.5576	0.55763479	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	54.126	44.863	2;3	4.2294E-14	24677	160513_QHF_FH_JSI10Kac_6	157.52	146.99			0.90574	0.96591	27.893	8	3	Median	1.1391	0.95303	NaN	1	0	Median	0.8236	0.97897	15.198	3	2	Median	0.77134	0.74762	11.572	2	0	Median	1.365	1.4842	7.061	2	1	Median	744280000	353520000	390760000	132970000	61324000	71644000	283210000	140440000	142770000	227940000	111960000	115980000	100160000	39789000	60367000	21765	4	20603	134302;134303;134304;134305;134306;134307;134308;134309	182387;182388;182389;182390;182391;182392;182393;182394;182395;182396;182397	182397			11	
GYAFVQYSNER	0	Unmodified	1332.6099	0.6098646	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.86	6.54	1	2	3					4	4	3	4	3	4	49.923	43.092	2	5.2677E-27	22879	160513_QHF_FH_JSI9Kac_6	211.52	200.37			1.0697	1.1327	15.596	12	0	Median	1.4037	1.1884	14.492	3	0	Median	1.0099	1.2081	7.9894	3	0	Median	1.0919	1.0758	20.639	3	0	Median	1.0479	1.106	14.318	3	0	Plateau	524010000	228570000	295440000	130000000	50189000	79814000	142460000	64789000	77668000	151750000	60841000	90914000	99795000	52753000	47042000	21766	5375	20604	134310;134311;134312;134313;134314;134315;134316;134317;134318;134319;134320;134321;134322;134323	182398;182399;182400;182401;182402;182403;182404;182405;182406;182407;182408;182409;182410;182411;182412;182413;182414;182415;182416;182417;182418	182413			21	
GYAFVTFCTK	1	Unmodified	1192.5587	0.55868065	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.31		2	2					3	4	2	2	3	4	70.282	62.789	2	9.7604E-25	33984	160513_QHF_FH_JSI11Kac_6	183.65	162.75			1.2821	1.261	29.631	9	0	Median	1.3558	1.1845	NaN	1	0	Median	1.0433	1.2379	12.602	2	0	Median	0.97207	0.91807	16.297	3	0	Plateau	1.5297	1.6921	29.937	3	0	Median	2789500000	1281100000	1508400000	339690000	139470000	200220000	905240000	433000000	472240000	992080000	482530000	509550000	552490000	226120000	326370000	21767	423	20605	134324;134325;134326;134327;134328;134329;134330;134331;134332;134333;134334	182419;182420;182421;182422;182423;182424;182425;182426;182427;182428;182429;182430;182431;182432;182433;182434;182435;182436	182423			18	
GYALTALMK	1	Unmodified	966.52084	0.52083858	574	O75843	AP1G2	AP-1 complex subunit gamma-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.43		4	1					5	3	4	3	3	3	65.551	59.125	2	4.9229E-05	32088	160513_QHF_FH_JSI11Kac_6	121.62	0			0.98627	0.89922	23.748	13	4	Median	1.0234	0.83212	21.316	4	3	Median	0.56226	0.68533	25.711	3	0	Plateau	0.83331	0.80052	30.437	3	0	Plateau	0.98627	1.0802	15.527	3	1	Median	611010000	334940000	276070000	90800000	52922000	37878000	133090000	81200000	51885000	151400000	78152000	73249000	235720000	122670000	113060000	21768	574	20606	134335;134336;134337;134338;134339;134340;134341;134342;134343;134344;134345;134346;134347	182437;182438;182439;182440;182441;182442;182443;182444;182445;182446;182447;182448;182449;182450;182451	182440			14	
GYASVFK	1	Unmodified	770.39629	0.39629	4344	Q9BQ15	NABP2	SOSS complex subunit B1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.504	29.45	2	0.014789	24659	160511_QHF_FH_JSI12i_3	65.672	48.745			1.2666	1.269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2666	1.269	NaN	1	0	Median	93120000	41933000	51187000	0	0	0	0	0	0	0	0	0	93120000	41933000	51187000	21769	4344	20607	134348	182452;182453	182452			2	
GYAVLGGER	0	Unmodified	920.47158	0.4715802	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	4	7	6	6	32.304	27.634	2	2.5641E-06	23347	160511_QHF_FH_JSI12i_3	126.04	109.48			0.95539	0.96141	21.417	20	3	Median	1.2642	1.0424	17.566	4	0	Median	0.99143	1.1574	16.195	4	0	Median	0.8774	0.88077	23.464	6	2	Median	0.91562	0.97951	15.303	6	1	Median	4486700000	2259100000	2227500000	1367000000	578410000	788590000	1073300000	566250000	507040000	1060000000	601580000	458380000	986430000	512910000	473520000	21770	1650	20608	134349;134350;134351;134352;134353;134354;134355;134356;134357;134358;134359;134360;134361;134362;134363;134364;134365;134366;134367;134368;134369;134370;134371	182454;182455;182456;182457;182458;182459;182460;182461;182462;182463;182464;182465;182466;182467;182468;182469;182470;182471;182472;182473;182474;182475;182476;182477;182478;182479;182480;182481;182482;182483;182484;182485;182486;182487;182488;182489;182490;182491	182488			38	
GYAVNVFDIQQGFDNPQVR	0	Unmodified	2166.0494	0.049416394	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								2	4	3	4	90.356	89.918	2;3	1.9956E-32	81538	160511_QHF_FH_JSI10i_1	234.69	212.11			0.8446	1.0487	23.964	13	0	Median	1.4441	1.244	8.9414	2	0	Median	0.81297	0.96414	18.755	4	0	Median	0.76045	0.72747	26.781	3	0	Median	0.8354	0.89994	26.158	4	0	Median	512460000	251740000	260720000	121940000	50096000	71845000	173110000	88963000	84146000	89472000	44557000	44915000	127940000	68122000	59819000	21771	2701	20609	134372;134373;134374;134375;134376;134377;134378;134379;134380;134381;134382;134383;134384	182492;182493;182494;182495;182496;182497;182498;182499;182500;182501;182502;182503;182504;182505;182506;182507;182508;182509;182510;182511;182512;182513	182503			21	
GYAYTFITEDQAR	0	Unmodified	1533.71	0.70997257	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.87	6.72	2	4					1	4	4	4	4	4	3	64.069	58.117	2	3.2488E-31	49852	160511_QHF_FH_JSI12i_2	195.27	169.88			0.97686	1.0519	18.718	13	1	Median	1.3201	1.0984	8.5178	4	0	Median	0.77605	0.95345	10.398	3	0	Plateau	0.88964	0.86401	11.081	3	0	Median	0.93769	1.031	33.168	3	1	Median	726840000	368210000	358630000	183550000	75260000	108290000	126700000	68432000	58268000	211370000	115370000	96002000	205220000	109150000	96067000	21772	3216	20610	134385;134386;134387;134388;134389;134390;134391;134392;134393;134394;134395;134396;134397;134398;134399	182514;182515;182516;182517;182518;182519;182520;182521;182522;182523;182524;182525;182526;182527;182528;182529;182530;182531;182532;182533	182515			17	
GYAYVEFENPDEAEK	1	Unmodified	1759.7577	0.75771063	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	58.128	57.438	2;3	2.086E-40	52097	160511_QHF_FH_JSI12i_1	208.72	202.49			1.0446	0.99592	11.88	7	4	Median	1.0249	0.84295	2.8688	2	2	Median	0.87336	1.03	NaN	1	0	Median	1.1086	1.0652	9.5104	2	1	Median	1.0024	1.0427	7.4786	2	1	Median	865310000	431390000	433920000	230310000	119510000	110800000	192760000	103390000	89373000	228830000	107910000	120920000	213410000	100580000	112830000	21773	2650	20611	134400;134401;134402;134403;134404;134405;134406	182534;182535;182536;182537;182538;182539;182540;182541;182542;182543;182544	182538			11	
GYCLIINNHNFAK	1	Unmodified	1562.7664	0.76638202	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	13.4	5.2			1						4	1	2	1	1	61.732	54.032	3	1.5538E-20	29733	160513_QHF_FH_JSI10Kac_6	152.07	142.27			1.2661	1.3543	29.288	5	1	Median	1.7661	1.4358	NaN	1	0	Median	1.1428	1.3204	49.234	2	1	Median	1.0019	0.95959	NaN	1	0	Median	1.2661	1.3543	NaN	1	0	Median	150540000	73083000	77460000	15636000	5171600	10465000	89464000	46762000	42702000	27451000	12061000	15390000	17992000	9088400	8903200	21774	2575	20612	134407;134408;134409;134410;134411	182545;182546;182547	182547			3	
GYCVMLGYWGEPQK	1	Unmodified	1686.7534	0.75343407	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	81.122	71.808	2	1.2587E-45	39484	160513_QHF_FH_JSI11Kac_6	198.62	191.24			0.81159	0.79717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81159	0.79717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25934000	14301000	11633000	0	0	0	0	0	0	25934000	14301000	11633000	0	0	0	21775	4007	20613	134412;134413	182548;182549	182548			2	
GYDAPLCNLLLFKK	2	Unmodified	1650.8803	0.88034914	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	89	88.912	3	0.00021689	77196	160511_QHF_FH_JSI12i_3	67.234	46.853			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21776	418	20614	134414	182550	182550			1	
GYDFESETDTETIAK	1	Unmodified	1704.7366	0.73664084	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	2	3	56.025	51.664	2	4.994E-117	46704	160511_QHF_FH_JSI11i_1	277.75	262.21			1.028	0.99315	13.115	7	1	Median	1.1468	0.95143	NaN	1	0	Median	0.76529	0.88895	15.677	2	0	Median	1.0873	1.071	NaN	1	0	Median	1.028	1.0979	13.182	3	1	Median	1467200000	733420000	733790000	325390000	148700000	176690000	386070000	204930000	181130000	399960000	198730000	201230000	355790000	181060000	174740000	21777	2242	20615	134415;134416;134417;134418;134419;134420;134421;134422	182551;182552;182553;182554;182555;182556;182557;182558;182559;182560;182561;182562;182563	182552			13	
GYDQSAYDGK	1	Unmodified	1102.4567	0.456718	1354;2788	P30508;Q29960;P30510;P30501;Q29963;P10321	HLA-C	HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	16.228	12.854	2	7.3512E-10	10874	160511_QHF_FH_JSI9i_1	137.95	117.43			0.91006	0.92134	18.898	7	3	Median	0.93687	0.75437	NaN	1	0	Median	0.67127	0.79649	22.603	2	1	Median	1.0106	0.98981	10.137	2	1	Median	0.75207	0.81547	28.376	2	1	Median	1495600000	883660000	611960000	261440000	131810000	129630000	428280000	275870000	152420000	420100000	244900000	175200000	385810000	231090000	154720000	21778	1354;2788	20616	134423;134424;134425;134426;134427;134428;134429;134430	182564;182565;182566;182567;182568;182569;182570;182571;182572;182573;182574	182570			11	
GYDSAGVGFDGGNDK	1	Unmodified	1457.6059	0.60590143	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	37.022	32.848	2	4.8394E-40	29646	160511_QHF_FH_JSI12i_1	205.02	186.8			0.97757	0.96366	11.457	7	0	Median	1.0504	0.8493	NaN	1	0	Median	0.83821	0.96069	10.382	2	0	Median	1.0678	1.0381	10.61	2	0	Median	0.98935	1.0591	13.359	2	0	Median	806970000	381130000	425840000	180430000	75121000	105300000	209080000	106650000	102440000	197570000	92259000	105310000	219890000	107100000	112780000	21779	2242	20617	134431;134432;134433;134434;134435;134436;134437	182575;182576;182577;182578;182579;182580;182581;182582;182583;182584;182585	182578			11	
GYDSDPVK	1	Unmodified	879.39741	0.39741221	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	13.534	13.263	2	0.021447	11018	160511_QHF_FH_JSI12i_1	55.676	36.945			0.37004	0.37133	8.4352	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36733	0.34983	NaN	1	1	Median	0.37277	0.39416	NaN	1	1	Median	613560000	471250000	142310000	0	0	0	0	0	0	319610000	248890000	70725000	293940000	222360000	71581000	21780	999	20618	134438;134439;134440	182586;182587;182588	182587			3	
GYDVDFPR	0	Unmodified	967.43995	0.43994572	2242;608	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	2	1	4	48.093	45.644	2	0.00042494	41335	160511_QHF_FH_JSI11i_1	108.7	75.181			0.97254	0.99408	4.9448	6	1	Median	1.1416	0.94938	NaN	1	0	Median	0.80066	0.92811	NaN	1	0	Median	1.0538	1.0397	NaN	1	0	Median	0.95479	0.99139	3.3713	3	1	Plateau	701360000	364210000	337150000	115780000	56529000	59256000	207160000	113110000	94050000	178020000	94255000	83765000	200400000	100320000	100080000	21781	2242;608	20619	134441;134442;134443;134444;134445;134446;134447;134448	182589;182590;182591;182592;182593;182594;182595;182596;182597;182598;182599;182600;182601	182590			13	
GYDVIAQAQSGTGK	1	Unmodified	1393.6838	0.68375782	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.76	6.28	8	6	4		3	5	5	4	6	8	15	10	8	43.733	38.182	2;3	1.0484E-40	34417	160511_QHF_FH_JSI11i_1	253.76	189.05			0.88419	0.91978	75.778	34	12	Median	1.1475	0.96334	21.828	6	3	Median	0.82644	0.96598	84.003	13	5	Median	0.93438	0.91021	97.128	9	3	Median	0.81748	0.8706	68.277	6	1	Median	13217000000	6840500000	6376200000	2479000000	1070900000	1408100000	3809400000	2090000000	1719400000	3811500000	2071900000	1739600000	3116700000	1607700000	1509100000	21782	1917;2519	20620	134449;134450;134451;134452;134453;134454;134455;134456;134457;134458;134459;134460;134461;134462;134463;134464;134465;134466;134467;134468;134469;134470;134471;134472;134473;134474;134475;134476;134477;134478;134479;134480;134481;134482;134483;134484;134485;134486;134487;134488;134489	182602;182603;182604;182605;182606;182607;182608;182609;182610;182611;182612;182613;182614;182615;182616;182617;182618;182619;182620;182621;182622;182623;182624;182625;182626;182627;182628;182629;182630;182631;182632;182633;182634;182635;182636;182637;182638;182639;182640;182641;182642;182643;182644;182645;182646;182647;182648;182649;182650;182651;182652;182653;182654;182655;182656;182657;182658;182659;182660;182661;182662;182663;182664;182665;182666;182667;182668;182669;182670;182671	182603			69	
GYDYGPHFQGILEASLEGDSGR	0	Unmodified	2367.0768	0.076753356	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	3	4	85.699	85.235	2;3	2.6045E-29	75966	160511_QHF_FH_JSI11i_3	178.35	174.25			1.0898	1.03	16.652	9	3	Median	1.2505	1.0787	13.708	2	1	Median	0.94788	1.1401	NaN	1	0	Median	1.0898	1.03	9.2439	3	1	Median	0.90132	0.92974	25.874	3	1	Median	995020000	520140000	474880000	63171000	32926000	30246000	92451000	55058000	37393000	356120000	172780000	183330000	483280000	259380000	223900000	21783	1650	20621	134490;134491;134492;134493;134494;134495;134496;134497;134498;134499	182672;182673;182674;182675;182676;182677;182678;182679;182680;182681;182682;182683;182684;182685;182686;182687;182688;182689;182690	182673			18	
GYEDDDYVSK	1	Unmodified	1189.4775	0.47751302	1759	P51946	CCNH	Cyclin-H	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	22.289	21.786	2	0.0028461	18743	160511_QHF_FH_JSI9i_1	60.064	55.452			1.145	1.2013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.145	1.2013	NaN	1	0	Median	20765000	9780800	10984000	0	0	0	0	0	0	0	0	0	20765000	9780800	10984000	21784	1759	20622	134500;134501	182691;182692;182693	182693			3	
GYEEEIIHFK	1	Unmodified	1263.6136	0.61355299	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	54.213	53.251	3	0.0022224	45594	160511_QHF_FH_JSI12i_2	48.981	45.336			0.9421	1.0752	27.432	4	1	Median	0.74143	0.65245	NaN	1	1	Median	0.8197	1.0156	NaN	1	0	Median	1.1008	1.1383	NaN	1	0	Median	1.0828	1.1872	NaN	1	0	Median	99116000	50589000	48527000	13178000	7146200	6031700	28261000	13868000	14393000	35164000	20085000	15079000	22513000	9488900	13024000	21785	3896	20623	134502;134503;134504;134505	182694;182695	182694			2	
GYEEEIIHFKK	2	Unmodified	1391.7085	0.70851601	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	44.061	43.917	2;3;4	1.2591E-23	37443	160511_QHF_FH_JSI12i_3	149.23	129.13			0.92396	0.93254	19.599	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2291	1.1417	22.493	2	1	Median	0.90681	0.93254	9.6221	3	1	Plateau	537980000	284720000	253260000	0	0	0	0	0	0	135800000	61354000	74447000	402180000	223370000	178820000	21786	3896	20624	134506;134507;134508;134509;134510	182696;182697;182698;182699;182700;182701;182702	182699			7	
GYEENYFFIFR	0	Unmodified	1483.6772	0.67721588	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.96		5							4	2	2	3	2	91.837	87.966	2	6.273E-72	42315	160513_QHF_FH_JSI12Kac_6	232.97	219.62			1.2023	1.2103	9.1933	9	3	Median	1.3418	1.1598	15.932	2	0	Median	0.88392	1.0737	11.028	2	1	Median	1.2666	1.2354	1.04	3	2	Plateau	1.1071	1.1787	9.4447	2	0	Median	645140000	301600000	343540000	114800000	49821000	64980000	222250000	112580000	109680000	171420000	74647000	96772000	136670000	64556000	72111000	21787	3563	20625	134511;134512;134513;134514;134515;134516;134517;134518;134519	182703;182704;182705;182706;182707;182708;182709;182710;182711;182712;182713;182714;182715;182716	182714			14	
GYEEVHVPALKPK	2	Unmodified	1465.7929	0.79291434	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	40.936	40.534	3;4	1.74E-05	35411	160511_QHF_FH_JSI11i_3	102.97	100.73			1.0557	1.0273	26.238	7	1	Median	NaN	NaN	NaN	0	0	Median	0.88069	1.0615	63.778	2	1	Median	1.1109	1.0461	3.4368	3	0	Plateau	1.0208	1.0341	4.1729	2	0	Median	990550000	488130000	502410000	0	0	0	63536000	36953000	26583000	340120000	162560000	177560000	586890000	288620000	298270000	21788	552	20626	134520;134521;134522;134523;134524;134525;134526	182717;182718;182719;182720;182721;182722;182723;182724	182718			8	
GYEEVHVPALKPK	2	Acetyl (K)	1507.8035	0.80347903	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		64.599	53.679	3	0.024441	29146	160513_QHF_FH_JSI11Kac_5	43.382	37.889			1.1959	1.1619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1959	1.1619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1618800	663860	954940	0	0	0	0	0	0	1618800	663860	954940	0	0	0	21789	552	20626	134527	182725	182725	290		1	
GYEEWLLNEIR	0	Unmodified	1420.6987	0.69867961	361;1021	O43707;P12814;P35609	ACTN4;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	89.174	88.703	2;3	9.9985E-30	78158	160511_QHF_FH_JSI11i_2	190.88	168.14			0.9731	1.0817	49.297	5	0	Median	0.55796	0.47677	NaN	1	0	Median	0.54631	0.65716	NaN	1	0	Median	1.4869	1.436	6.9264	2	0	Median	0.9731	1.0817	NaN	1	0	Median	761280000	370170000	391110000	152830000	99221000	53613000	117530000	73315000	44212000	347100000	129020000	218090000	143820000	68616000	75202000	21790	361;1021	20627	134528;134529;134530;134531;134532;134533	182726;182727;182728;182729;182730;182731;182732;182733;182734	182731			9	
GYEFESETDTETIAK	1	Unmodified	1718.7523	0.7522909	608	O94808	GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			50.575	49.365	2	4.5251E-12	44530	160511_QHF_FH_JSI10i_1	113.61	89.623			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9130200	0	9130200	9130200	0	9130200	0	0	0	0	0	0	0	0	0	21791	608	20628	134534;134535	182735;182736	182735			2	
GYEIDEDIVSR	0	Unmodified	1294.6041	0.60411052	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.757	51.348	2	0.00088894	46261	160511_QHF_FH_JSI10i_1	78.513	64.693			1.1779	1.4215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1779	1.4215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66955000	32616000	34338000	0	0	0	66955000	32616000	34338000	0	0	0	0	0	0	21792	185	20629	134536	182737	182737			1	
GYEKGQPDEELKPK	3	Acetyl (K)	1658.8152	0.81516593	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14	0							2				1		1	39.418	29.644	3	0.0012482	17651	160513_QHF_FH_JSI12Kac_4	76.588	63.451			0.85393	0.98689	14.574	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90483	1.094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80589	0.89025	NaN	1	0	Median	19222000	9597500	9624400	0	0	0	7994800	3922500	4072300	0	0	0	11227000	5674900	5552200	21793	1823	20630	134537;134538	182738;182739	182739	1838;1839		2	
GYELLFQPEVVR	0	Unmodified	1448.7664	0.76636524	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.329	82.726	2	3.0424E-06	72723	160511_QHF_FH_JSI11i_2	121.61	83.877			1.217	1.2597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.217	1.2597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92384000	33172000	59212000	0	0	0	0	0	0	92384000	33172000	59212000	0	0	0	21794	442	20631	134539	182740	182740			1	
GYESFGVHR	0	Unmodified	1050.4883	0.4882929	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	22.558	22.16	2;3	8.573E-07	18079	160511_QHF_FH_JSI12i_3	136.16	61.82			0.99794	1.0234	8.772	8	1	Median	1.2449	1.0922	4.5791	2	1	Median	0.82146	1.0102	NaN	1	0	Median	0.94356	0.89028	7.8704	3	0	Plateau	1.0595	1.0718	9.9072	2	0	Median	550960000	273350000	277620000	91471000	42712000	48759000	34172000	17190000	16982000	165790000	85976000	79816000	259530000	127470000	132060000	21795	2216	20632	134540;134541;134542;134543;134544;134545;134546;134547	182741;182742;182743;182744;182745;182746;182747;182748;182749	182747			7	
GYEVHGIVR	0	Unmodified	1028.5403	0.54032847	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	4.02		3	6						1	1	2	3	4	24.665	24.127	2;3	0.00012756	21008	160511_QHF_FH_JSI10i_2	66.568	62.867			1.0082	0.96639	17.608	6	2	Median	0.98048	0.84392	NaN	1	0	Median	0.57698	0.71132	NaN	1	0	Median	1.0912	1.0104	NaN	1	1	Median	1.076	1.1048	11.03	3	1	Plateau	313030000	153020000	160010000	38430000	17295000	21135000	66533000	41629000	24904000	72696000	30393000	42303000	135370000	63704000	71668000	21796	427	20633	134548;134549;134550;134551;134552;134553;134554;134555;134556;134557	182750;182751;182752;182753;182754;182755;182756;182757	182754			8	
GYEYVLEPSPVSLPLDRPQETR	0	Unmodified	2544.286	0.28601785	4120	Q96I51	WBSCR16	Williams-Beuren syndrome chromosomal region 16 protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		83.051	82.416	3	1.4663E-05	73263	160511_QHF_FH_JSI10i_2	66.827	58.437			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21797	4120	20634	134558;134559	182758;182759	182759			2	
GYFAVTEK	1	Unmodified	913.45453	0.45453316	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	43.199	32.928	2	0.021737	17480	160513_QHF_FH_JSI12Kac_5	54.157	23.439			1.3743	1.3462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3743	1.3462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3257700	1353600	1904100	0	0	0	0	0	0	3257700	1353600	1904100	0	0	0	21798	2344	20635	134560;134561;134562;134563	182760;182761;182762;182763	182762			4	
GYFDEEMNR	0	Unmodified	1159.4604	0.46042317	2636;1898	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	36.903	36.207	2	7.8761E-05	32795	160511_QHF_FH_JSI12i_1	95.605	95.605			0.89284	0.94021	23.145	7	0	Median	1.0004	0.85188	54.941	2	0	Median	0.78731	0.92476	2.3424	2	0	Median	0.93739	0.91933	5.4066	2	0	Median	0.96917	0.98727	NaN	1	0	Median	496000000	252370000	243630000	85063000	46601000	38462000	162790000	88503000	74283000	163680000	77504000	86174000	84473000	39759000	44714000	21799	2636;1898	20636	134564;134565;134566;134567;134568;134569;134570	182764;182765;182766;182767;182768;182769;182770	182765			7	
GYFDQELK	1	Unmodified	998.47091	0.4709115	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.33	6.13	4						2			1	3		2	45.618	40.996	2	0.0019272	37090	160511_QHF_FH_JSI10i_1	81.548	63.512			0.84203	0.90096	10.681	5	2	Median	1.0812	0.88569	NaN	1	0	Median	0.73403	0.86413	9.7902	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91722	0.98749	12.97	2	0	Median	333690000	171850000	161840000	92296000	38695000	53602000	129500000	73495000	56005000	0	0	0	111890000	59658000	52237000	21800	2399	20637	134571;134572;134573;134574;134575;134576	182771;182772;182773;182774;182775;182776	182773			6	
GYFEELITMLEAALGLER	0	Unmodified	2054.0394	0.039428559	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.49	99.771	3	6.555E-34	59104	160513_QHF_FH_JSI10Kac_6	172.24	157.28			0.97324	1.1736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97324	1.1736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	268750000	135480000	133270000	0	0	0	268750000	135480000	133270000	0	0	0	0	0	0	21801	2155	20638	134577	182777;182778	182778			2	
GYFEYIEENK	1	Unmodified	1290.5768	0.57683314	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.25	4	8	5				2	4	3	6	7	6	7	59.049	54.974	2	3.0149E-47	48330	160511_QHF_FH_JSI9i_2	252.49	200.01			0.89109	0.98123	51.056	26	19	Median	1.0477	0.88274	30.248	6	5	Median	0.85319	0.99341	88.293	7	4	Median	1.1183	1.0684	20.695	6	5	Median	0.91602	1.0162	31.228	7	5	Median	17583000000	8704900000	8878000000	3430700000	1604600000	1826200000	2867400000	1742000000	1125400000	6927500000	3168200000	3759300000	4357300000	2190200000	2167100000	21802	2161	20639	134578;134579;134580;134581;134582;134583;134584;134585;134586;134587;134588;134589;134590;134591;134592;134593;134594;134595;134596;134597;134598;134599;134600;134601;134602;134603	182779;182780;182781;182782;182783;182784;182785;182786;182787;182788;182789;182790;182791;182792;182793;182794;182795;182796;182797;182798;182799;182800;182801;182802;182803;182804;182805;182806;182807	182793			27	
GYFEYIEENKYSR	1	Acetyl (K)	1738.7839	0.7838658	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.181	65.845	2	3.0748E-27	35860	160513_QHF_FH_JSI11Kac_6	202.65	175.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18630000	18630000	0	0	0	0	0	0	0	18630000	18630000	0	0	0	0	21803	2161	20640	134604	182808	182808	2274		1	
GYFFPTSAR	0	Unmodified	1044.5029	0.50288033	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	51.239	50.391	2	0.0027151	41214	160511_QHF_FH_JSI9i_3	63.48	28.672			1.1862	1.2675	54.066	4	0	Median	2.0129	1.6381	NaN	1	0	Median	1.3545	1.6071	NaN	1	0	Median	1.0388	0.99958	NaN	1	0	Median	0.50339	0.51814	NaN	1	0	Median	304490000	144370000	160120000	80958000	27572000	53386000	94169000	43377000	50792000	64515000	28861000	35654000	64849000	44557000	20292000	21804	5242	20641	134605;134606;134607;134608	182809;182810	182810			1	
GYFSEEMNR	0	Unmodified	1131.4655	0.46550855	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.766	31.841	2	3.2977E-08	26963	160511_QHF_FH_JSI12i_2	148.04	138.01			1.1057	1.0717	14.988	4	0	Median	1.0949	0.93142	NaN	1	0	Median	0.83762	1.0133	NaN	1	0	Median	1.1167	1.1335	NaN	1	0	Median	1.1598	1.3171	NaN	1	0	Median	264720000	127630000	137090000	39275000	18739000	20536000	75518000	42884000	32634000	98327000	41934000	56393000	51596000	24070000	27526000	21805	2636	20642	134609;134610;134611;134612	182811;182812;182813;182814;182815;182816;182817;182818	182811			8	
GYFSEEMNR	0	Oxidation (M)	1147.4604	0.46042317	2636	Q15149	PLEC	Plectin	yes	yes	0	0	1	0			By MS/MS		2	0		2										2		32.215	31.826	2	0.021307	26987	160511_QHF_FH_JSI11i_2	52.716	48.306			0.5415	0.55979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5415	0.55979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22896000	9754400	13142000	0	0	0	0	0	0	22896000	9754400	13142000	0	0	0	21806	2636	20642	134613;134614	182819;182820	182820			2	
GYFVQTPEELQK	1	Unmodified	1437.714	0.71399532	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								1	1	2		56.618	56.179	2	3.9781E-06	50675	160511_QHF_FH_JSI10i_1	119.68	103.46			0.59089	0.69961	62.078	3	3	Median	NaN	NaN	NaN	0	0	Median	0.59089	0.69961	NaN	1	1	Median	0.68447	0.65964	87.661	2	2	Median	NaN	NaN	NaN	0	0	Median	89159000	54502000	34657000	0	0	0	36466000	26156000	10310000	52693000	28346000	24348000	0	0	0	21807	5339	20643	134615;134616;134617;134618	182821;182822;182823;182824	182822			4	
GYGAGVVTVFK	1	Unmodified	1096.5917	0.59169534	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		15.7	0.471								1	2	2		1		66.865	57.158	2	8.8658E-05	30300	160513_QHF_FH_JSI9Kac_6	93.649	79.008			1.0386	0.85579	34.169	3	1	Median	0.98663	0.81442	7.0077	2	0	Median	NaN	NaN	NaN	0	0	Median	1.543	1.4627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19041000	7507400	11534000	8599400	3418400	5181000	0	0	0	10442000	4089100	6352700	0	0	0	21808	5091	20644	134619;134620;134621	182825;182826;182827;182828	182827			4	
GYGAGVVTVFKK	2	Unmodified	1224.6867	0.68665836	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				48.299	46.69	2	0.00040913	38229	160511_QHF_FH_JSI9i_3	94.692	83.202			0.68216	0.57637	20.113	2	2	Median	0.68216	0.57637	20.113	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22703000	14208000	8494400	22703000	14208000	8494400	0	0	0	0	0	0	0	0	0	21809	5091	20645	134622;134623	182829;182830	182830			2	
GYGCAGVSSVAYGLLAR	0	Unmodified	1699.8352	0.83518986	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			79.46	78.083	2	1.0588E-08	65494	160511_QHF_FH_JSI10i_3	101.95	76.737			0.58271	0.70679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58271	0.70679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4485600	3224400	1261200	0	0	0	4485600	3224400	1261200	0	0	0	0	0	0	21810	3912	20646	134624;134625	182831;182832	182832			2	
GYGFAEYMK	1	Unmodified	1064.4637	0.46371763	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.815	53.438	2	0.0011739	45730	160511_QHF_FH_JSI12i_2	79.474	48.185			2.9789	3.3101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9789	3.3101	NaN	1	1	Median	214830000	56849000	157980000	0	0	0	0	0	0	0	0	0	214830000	56849000	157980000	21811	3459	20647	134626	182833	182833			1	
GYGFGLIK	1	Unmodified	853.46979	0.46978929	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	6.04	3	8	10					5	4	8	6	9	7	63.048	59.133	1;2	0.00024148	32000	160513_QHF_FH_JSI11Kac_6	117.7	83.96			1.0509	1.0325	20.831	26	5	Median	1.1618	0.98775	35.085	6	2	Median	0.83314	1.0074	15.703	6	1	Median	1.0443	1.0543	6.8301	7	1	Median	1.0335	1.1569	19.61	7	1	Median	18289000000	8394000000	9894900000	2530000000	1054000000	1476000000	4682300000	2326400000	2355900000	5562200000	2657300000	2904900000	5514500000	2356400000	3158100000	21812	1195	20648	134627;134628;134629;134630;134631;134632;134633;134634;134635;134636;134637;134638;134639;134640;134641;134642;134643;134644;134645;134646;134647;134648;134649;134650;134651;134652;134653;134654;134655;134656	182834;182835;182836;182837;182838;182839;182840;182841;182842;182843;182844;182845;182846;182847;182848;182849;182850;182851;182852;182853;182854;182855;182856;182857;182858;182859;182860;182861;182862;182863;182864;182865;182866;182867;182868;182869;182870;182871;182872;182873;182874;182875;182876;182877;182878;182879;182880;182881;182882;182883;182884;182885;182886;182887	182852			51	
GYGFGMVK	1	Unmodified	857.41056	0.41055985	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	3	3	2	2	47.732	43.29	2	0.00058835	37009	160511_QHF_FH_JSI12i_2	103.29	80.357			1.0749	1.0982	11.349	10	0	Median	1.3683	1.1557	1.4411	3	0	Median	0.97282	1.1961	15.588	3	0	Median	1.0749	1.0437	0.46226	2	0	Median	0.9284	0.99034	1.256	2	0	Median	1837600000	962810000	874820000	373920000	167890000	206030000	459190000	245140000	214060000	598270000	326770000	271500000	406250000	223010000	183240000	21813	5499	20649	134657;134658;134659;134660;134661;134662;134663;134664;134665;134666	182888;182889;182890;182891;182892;182893;182894;182895;182896;182897;182898	182889			11	
GYGFIEYEK	1	Unmodified	1104.5128	0.51277632	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.69	1	4	1					4	2	3	2	4	3	55.947	50.621	2	0.00033791	27587	160513_QHF_FH_JSI11Kac_5	99.442	91.101			0.72417	0.71065	25.154	11	5	Median	1.0531	0.89317	23.647	3	2	Plateau	0.58919	0.70889	0.35038	2	1	Median	0.8091	0.81091	32.901	4	1	Median	0.7033	0.78854	41.998	2	1	Median	1794300000	933440000	860870000	282200000	139880000	142320000	279490000	167450000	112040000	720740000	381450000	339290000	511880000	244660000	267220000	21814	5315	20650	134667;134668;134669;134670;134671;134672;134673;134674;134675;134676;134677;134678	182899;182900;182901;182902;182903;182904;182905;182906;182907;182908;182909;182910	182906			10	
GYGFITFSDSECAK	1	Unmodified	1580.6817	0.68170891	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	67.965	67.028	2	3.6623E-08	58461	160511_QHF_FH_JSI11i_2	100.88	89.012			0.90364	0.92984	46.144	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67398	0.67097	NaN	1	0	Median	1.2116	1.2886	NaN	1	0	Median	64230000	32826000	31404000	0	0	0	0	0	0	40970000	22486000	18484000	23259000	10339000	12920000	21815	2538	20651	134679;134680;134681	182911;182912;182913;182914	182914			4	
GYGFVDFDSPAAAQK	1	Unmodified	1571.7256	0.72562264	1324	P29558;Q6XE24	RBMS1;RBMS3	RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	66.95	66.49	2	1.0842E-06	60157	160511_QHF_FH_JSI10i_1	160.18	139.41			1.0017	0.96453	10.502	3	2	Median	NaN	NaN	NaN	0	0	Median	0.7245	0.85712	NaN	1	1	Median	1.0017	0.96453	NaN	1	0	Median	1.0061	1.0569	NaN	1	1	Median	139820000	71259000	68562000	0	0	0	52863000	29303000	23560000	48021000	23416000	24605000	38936000	18540000	20396000	21816	1324	20652	134682;134683;134684	182915;182916;182917	182917			3	
GYGFVHFETQEAAER	0	Unmodified	1739.7903	0.79034816	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	6.4		11	9						10	7	9	7	7	55.132	51.153	2;3	5.7214E-104	27643	160513_QHF_FH_JSI11Kac_6	218.16	199.33			1.0032	1.0438	15.347	27	5	Median	1.2927	1.1136	14.16	7	1	Median	0.89253	1.0408	12.203	8	0	Median	0.99136	0.96062	7.5839	6	2	Median	0.86448	0.86393	15.688	6	2	Median	6701700000	3337100000	3364600000	892880000	395110000	497770000	1473500000	772520000	700960000	2746300000	1290900000	1455400000	1589000000	878580000	710410000	21817	1009	20653	134685;134686;134687;134688;134689;134690;134691;134692;134693;134694;134695;134696;134697;134698;134699;134700;134701;134702;134703;134704;134705;134706;134707;134708;134709;134710;134711;134712;134713;134714	182918;182919;182920;182921;182922;182923;182924;182925;182926;182927;182928;182929;182930;182931;182932;182933;182934;182935;182936;182937;182938;182939;182940;182941;182942;182943;182944;182945;182946;182947;182948;182949;182950;182951;182952;182953;182954;182955;182956;182957;182958;182959;182960;182961;182962;182963;182964;182965	182934			47	
GYGFVSFFNK	1	Unmodified	1164.5604	0.56039521	1375	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	82.615	77.542	2	3.9663E-44	41868	160513_QHF_FH_JSI10Kac_6	210.1	145.06			1.0125	0.89987	8.9447	7	0	Median	1.0327	0.85308	1.2001	2	0	Median	0.74265	0.8646	5.6542	2	0	Median	1.072	1.0098	0.31311	2	0	Median	0.95754	1.0071	NaN	1	0	Median	1870800000	914620000	956170000	636670000	276130000	360540000	488030000	300250000	187780000	552800000	245390000	307410000	193300000	92856000	100440000	21818	1375	20654	134715;134716;134717;134718;134719;134720;134721	182966;182967;182968;182969;182970;182971;182972;182973;182974;182975;182976;182977;182978;182979;182980;182981	182981			16	
GYGFVSFYNK	1	Unmodified	1180.5553	0.55530983	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.28	6.59		6	4					3	5	5	6	4	3	68.649	63.544	2	1.5462E-55	56247	160511_QHF_FH_JSI11i_3	226.54	210.34			1.0376	1.0391	22.774	16	5	Median	1.0862	0.93179	22.136	5	2	Median	0.88051	1.0567	33.06	5	2	Median	1.2573	1.111	9.4543	3	0	Plateau	1.0215	1.0444	17.783	3	1	Median	3463300000	1654500000	1808700000	890440000	418860000	471580000	771060000	391270000	379790000	1041900000	474070000	567860000	759850000	370350000	389500000	21819	2163	20655	134722;134723;134724;134725;134726;134727;134728;134729;134730;134731;134732;134733;134734;134735;134736;134737;134738;134739	182982;182983;182984;182985;182986;182987;182988;182989;182990;182991;182992;182993;182994;182995;182996;182997;182998;182999;183000;183001;183002;183003;183004;183005;183006;183007;183008;183009	182982			28	
GYGICHGTAGNGYSFLSLYR	0	Unmodified	2192.0109	0.010922397	4980	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.774	70.524	3	9.1275E-20	38524	160513_QHF_FH_JSI10Kac_6	146.18	140.39			1.1241	1.3318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1241	1.3318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165260000	75211000	90050000	0	0	0	165260000	75211000	90050000	0	0	0	0	0	0	21820	4980	20656	134740	183010;183011	183010			2	
GYGLCHGSAGNAYAFLTLYNLTQDMK	1	Unmodified	2864.3262	0.32618488	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.773	84.422	3	1.4798E-78	47097	160513_QHF_FH_JSI9Kac_6	203.96	191.99			1.1355	1.0404	15.987	4	0	Median	1.2894	1.1264	NaN	1	0	Median	0.79211	0.92965	NaN	1	0	Median	1.0234	0.96094	NaN	1	0	Median	1.2599	1.3157	NaN	1	0	Median	3261900000	1603200000	1658800000	307370000	128780000	178600000	1046300000	582760000	463510000	1111100000	559430000	551650000	797220000	332230000	464990000	21821	380	20657	134741;134742;134743;134744	183012;183013;183014;183015;183016;183017;183018	183014			7	
GYGLCHGSAGNAYAFLTLYNLTQDMK	1	Oxidation (M)	2880.3211	0.3210995	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	88.332	79.147	3	1.1315E-65	42461	160513_QHF_FH_JSI12Kac_6	201.24	195.26			1.0088	0.98321	28.865	4	3	Median	0.79859	0.69452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0088	0.98321	1.5032	2	2	Median	1.3383	1.408	NaN	1	0	Median	447990000	226560000	221430000	66957000	42451000	24506000	0	0	0	189510000	101720000	87784000	191530000	82388000	109140000	21822	380	20657	134745;134746;134747;134748	183019;183020;183021;183022;183023	183022		149	5	
GYGLFAGPCK	1	Unmodified	1068.5063	0.50625115	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	2	1	52.923	48.625	2	6.1649E-05	25286	160513_QHF_FH_JSI12Kac_6	91.9	72.123			1.1504	1.3383	27.016	3	1	Median	2.2728	1.8773	NaN	1	0	Median	1.1504	1.3383	NaN	1	0	Median	1.1364	1.1006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89361000	37016000	52345000	21812000	7819400	13992000	62214000	26335000	35879000	5335500	2861700	2473800	0	0	0	21823	2094	20658	134749;134750;134751;134752;134753	183024;183025;183026;183027;183028	183028			5	
GYGLLHTAAASGQIEVVK	1	Unmodified	1812.9734	0.9733979	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								2		1	60.919	60.023	3	1.8015E-12	51689	160511_QHF_FH_JSI12i_3	174.52	158.03			0.98383	1.0698	53.941	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3447	1.5666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71982	0.73055	NaN	1	1	Median	87827000	47021000	40806000	0	0	0	24740000	4903400	19837000	0	0	0	63087000	42118000	20969000	21824	3584	20659	134754;134755;134756	183029;183030;183031	183031			3	
GYGPATQVR	0	Unmodified	947.48248	0.48247924	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	no	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	17.282	16.386	2	0.0016808	13323	160511_QHF_FH_JSI12i_2	67.993	22.275			1.2425	1.2132	35.927	2	1	Median	1.8007	1.5641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85729	0.94104	NaN	1	0	Median	98264000	46266000	51998000	42487000	16499000	25989000	0	0	0	0	0	0	55777000	29767000	26010000	21825	1743	20660	134757;134758	183032;183033;183034	183033			3	
GYGTVIPPQASLVFHVLLIDVHNPK	1	Unmodified	2713.4956	0.49555712	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.72			5						14	6	5	4	4	97.902	91.616	2;3;4;5	1.8582E-73	49569	160513_QHF_FH_JSI9Kac_6	250.22	212.67			0.96523	0.9803	13.378	19	11	Median	1.0316	0.92178	16.768	6	4	Median	0.78081	0.88546	13.022	5	3	Median	1.1303	1.0762	6.6738	4	2	Median	0.96111	0.98447	3.6143	4	2	Median	44572000000	22383000000	22189000000	11388000000	5495100000	5892500000	5585000000	3203200000	2381800000	15754000000	7508900000	8245000000	11846000000	6176300000	5669600000	21826	3973	20661	134759;134760;134761;134762;134763;134764;134765;134766;134767;134768;134769;134770;134771;134772;134773;134774;134775;134776;134777	183035;183036;183037;183038;183039;183040;183041;183042;183043;183044;183045;183046;183047;183048;183049;183050;183051;183052;183053;183054;183055;183056;183057;183058	183048			23	
GYGYGQGAGTLNMDR	0	Unmodified	1558.6834	0.68344025	2733	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	42.004	41.256	2	3.6448E-44	35437	160511_QHF_FH_JSI11i_2	176.8	159.57			0.54345	0.61112	34.037	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.54345	0.61112	NaN	1	0	Median	0.76995	0.77644	NaN	1	1	Median	1.1436	1.1962	NaN	1	1	Median	73390000	44224000	29165000	0	0	0	32662000	19415000	13248000	23836000	12855000	10981000	16891000	11955000	4936600	21827	2733	20662	134778;134779;134780;134781;134782	183059;183060;183061;183062;183063	183063			5	
GYGYGQGAGTLNMDRGER	0	Unmodified	1900.8486	0.8486081	2733	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			36.807	35.35	3	0.00021251	29462	160511_QHF_FH_JSI10i_3	57.499	51.595			1.1165	1.0686	3.2394	2	0	Median	1.2769	1.0444	NaN	1	0	Median	0.97628	1.0934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51040000	23733000	27307000	29084000	14356000	14728000	21957000	9376900	12580000	0	0	0	0	0	0	21828	2733	20663	134783;134784	183064;183065	183064			1	
GYGYGQGAGTLSTDK	1	Unmodified	1473.6736	0.67358707	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	5.92	4	1	2			3	3			1	5	3	4	36.83	31.48	2	1.5165E-80	28482	160511_QHF_FH_JSI12i_1	240.12	228.39			0.92957	1.0488	15.837	10	3	Median	1.6735	1.3812	NaN	1	0	Median	0.73915	0.87344	12.143	3	1	Median	0.92018	0.8838	14.957	3	1	Median	1.0299	1.0949	3.5317	3	1	Plateau	3878700000	1897800000	1980900000	738600000	361750000	376850000	1098500000	546740000	551740000	981240000	469170000	512070000	1060400000	520120000	540230000	21829	1191	20664	134785;134786;134787;134788;134789;134790;134791;134792;134793;134794;134795;134796;134797	183066;183067;183068;183069;183070;183071;183072;183073;183074;183075;183076;183077;183078;183079;183080;183081;183082;183083;183084;183085;183086;183087;183088;183089;183090	183072			25	
GYGYGQGAGTLSTDKGESLGIK	2	Unmodified	2158.0542	0.054227	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	51.735	50.993	2;3	7.4738E-37	43641	160511_QHF_FH_JSI12i_3	190.83	181.78			0.92404	0.95482	17.464	8	1	Median	1.1129	0.97481	NaN	1	0	Median	0.80705	0.93985	2.3002	2	0	Median	0.96999	0.93506	2.89	2	0	Median	0.9877	1.0263	30.828	3	1	Plateau	1252600000	625750000	626840000	104020000	43674000	60345000	193990000	130960000	63031000	373310000	179400000	193910000	581260000	271710000	309550000	21830	1191	20665	134798;134799;134800;134801;134802;134803;134804;134805	183091;183092;183093;183094;183095;183096;183097;183098;183099;183100;183101;183102;183103;183104;183105;183106	183105			16	
GYHLNEEGTR	0	Unmodified	1174.5367	0.53669966	1219	P23142;CON__ENSEMBL:ENSBTAP00000016046	FBLN1	Fibulin-1	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	11.716	11.776	2;3	0.0019986	9308	160511_QHF_FH_JSI11i_3	53.597	37.982			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21831	1219	20666	134806;134807;134808	183107;183108;183109	183107			3	
GYHQYAYDGK	1	Unmodified	1200.52	0.51998696	967	P10316;P01892	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3		2	6	5	16.576	14.18	2;3	1.6999E-07	11279	160511_QHF_FH_JSI11i_3	118.71	106.18			1.0095	1.0552	35.063	10	2	Median	NaN	NaN	NaN	0	0	Median	0.84613	1.0069	3.2695	2	1	Median	0.84395	0.79748	35.072	5	1	Median	1.3335	1.3587	5.9813	3	0	Plateau	413480000	193830000	219650000	0	0	0	38337000	20936000	17401000	186880000	87550000	99326000	188260000	85343000	102920000	21832	967	20667	134809;134810;134811;134812;134813;134814;134815;134816;134817;134818;134819;134820;134821	183110;183111;183112;183113;183114;183115;183116;183117;183118;183119;183120;183121	183111			12	
GYHYATCLEGALK	1	Unmodified	1481.6973	0.6972994	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	48.062	47.941	2;3	2.6697E-05	42387	160511_QHF_FH_JSI11i_3	88.021	67.594			0.74277	0.73202	46.337	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63977	0.5954	36.669	2	1	Median	0.96845	0.98985	50.127	2	1	Median	281370000	139530000	141840000	0	0	0	0	0	0	161500000	91483000	70012000	119880000	48050000	71827000	21833	2242	20668	134822;134823;134824;134825	183122;183123;183124;183125;183126;183127	183122			6	
GYIAMLAVDSK	1	Oxidation (M)	1182.5955	0.59546009	2576	Q147X3	NAA30	N-alpha-acetyltransferase 30	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			59.265	48.624	2	0.015959	24746	160513_QHF_FH_JSI10Kac_5	62.2	40.693			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21834	2576	20669	134826	183128	183128		2018	1	
GYIAQYLNK	1	Unmodified	1068.5604	0.56039521	2969	Q5TEU4	NDUFAF5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			47.833	46.266	2	5.4403E-05	38644	160511_QHF_FH_JSI10i_3	116.54	107.03			1.5111	1.7632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5111	1.7632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24824000	7839600	16985000	0	0	0	24824000	7839600	16985000	0	0	0	0	0	0	21835	2969	20670	134827	183129	183129			1	
GYIDLSK	1	Unmodified	794.41742	0.41741937	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	34.279	33.676	2	0.0035499	29579	160511_QHF_FH_JSI9i_1	91.906	16.596			0.8698	0.9301	45.578	4	1	Median	2.3439	1.9088	NaN	1	1	Median	0.92729	1.101	NaN	1	0	Median	0.81588	0.78572	NaN	1	0	Median	0.64044	0.68627	NaN	1	0	Median	1669400000	848060000	821300000	306850000	133790000	173060000	456120000	249570000	206540000	498130000	237590000	260540000	408250000	227100000	181150000	21836	832	20671	134828;134829;134830;134831;134832	183130;183131;183132;183133;183134;183135;183136;183137	183137			8	
GYIFLEYASPAHAVDAVK	1	Unmodified	1949.9887	0.98871362	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.34		13	5						8	5	6	7	8	82.665	79.145	2;3	3.6532E-112	41222	160513_QHF_FH_JSI10Kac_6	308.42	262.5			1.1239	1.1948	13.117	20	9	Median	1.4018	1.185	14.951	4	2	Median	0.99487	1.211	10.911	5	2	Median	1.2059	1.2105	13.674	6	3	Median	1.0176	1.1076	13.766	5	2	Median	4560200000	2073300000	2486900000	1018700000	406630000	612060000	1338100000	691430000	646650000	1389100000	577800000	811250000	814420000	397460000	416960000	21837	1867	20672	134833;134834;134835;134836;134837;134838;134839;134840;134841;134842;134843;134844;134845;134846;134847;134848;134849;134850;134851;134852;134853;134854;134855;134856;134857;134858	183138;183139;183140;183141;183142;183143;183144;183145;183146;183147;183148;183149;183150;183151;183152;183153;183154;183155;183156;183157;183158;183159;183160;183161;183162;183163;183164;183165;183166;183167;183168;183169;183170;183171;183172;183173;183174;183175;183176;183177;183178;183179	183178			40	
GYIGVVK	1	Unmodified	734.43268	0.4326755	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	12	5.79		1						2	1	1		1	2	29.343	28.043	2	0.014353	23588	160511_QHF_FH_JSI12i_2	66.994	20.642			0.49834	0.54375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49834	0.54375	NaN	1	1	Median	38746000	23934000	14813000	0	0	0	0	0	0	0	0	0	38746000	23934000	14813000	21838	116	20673	134859;134860;134861;134862	183180;183181;183182;183183;183184	183180			5	
GYIGVVNR	0	Unmodified	876.48175	0.48175096	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.17	5.9			4					1	1	2	1	2	1	30.897	27.246	2	1.0542E-14	22743	160511_QHF_FH_JSI10i_3	170.96	125.98			1.0538	1.0376	17.408	6	0	Median	1.4587	1.2033	17.643	2	0	Median	0.84212	0.97552	NaN	1	0	Median	0.9405	0.89706	17.288	2	0	Median	1.0444	1.0636	NaN	1	0	Median	653500000	327260000	326240000	85757000	33190000	52567000	124240000	60059000	64182000	205260000	109260000	96000000	238240000	124750000	113490000	21839	1711	20674	134863;134864;134865;134866;134867;134868	183185;183186;183187;183188;183189;183190;183191	183188			7	
GYILQAK	1	Unmodified	791.45414	0.45413923	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.82	6.41	1	4	1				2	2	1	1	4	5	1	32.612	26.892	2	0.010475	23942	160511_QHF_FH_JSI10i_1	65.263	48.299			0.91556	0.96726	12.613	9	0	Median	1.1467	0.97594	NaN	1	0	Median	0.68005	0.81782	10.65	3	0	Plateau	0.94909	0.93441	14.737	4	0	Median	0.98051	1.1088	NaN	1	0	Median	518300000	254740000	263560000	82374000	38687000	43687000	132650000	73110000	59537000	211020000	94364000	116660000	92260000	48575000	43685000	21840	1623	20675	134869;134870;134871;134872;134873;134874;134875;134876;134877;134878;134879	183192;183193;183194;183195;183196;183197;183198;183199;183200	183197			9	
GYIPIYTPFFMR	0	Unmodified	1503.7584	0.75844309	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	97.377	93.161	2	9.9093E-23	90638	160511_QHF_FH_JSI11i_3	174.41	152.41			0.99601	1.0163	7.5739	8	0	Median	1.3509	1.1142	0.18508	2	0	Median	0.87227	1.0175	5.8164	2	0	Median	1.055	0.99769	3.5323	2	0	Median	0.92451	0.94745	8.9879	2	0	Median	7834700000	3913300000	3921500000	1865600000	797540000	1068100000	2323000000	1305700000	1017200000	2192700000	1071600000	1121000000	1453500000	738350000	715190000	21841	1667	20676	134880;134881;134882;134883;134884;134885;134886;134887	183201;183202;183203;183204;183205;183206;183207;183208;183209;183210;183211;183212;183213;183214	183201			14	
GYIPIYTPFFMR	0	Oxidation (M)	1519.7534	0.75335771	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	91.14	84.457	2	7.245E-08	43053	160513_QHF_FH_JSI12Kac_6	105.4	95.071			1.0439	1.0032	5.2839	5	1	Median	1.2448	1.0379	9.9094	2	0	Median	0.83315	0.9983	NaN	1	1	Median	1.0439	1.0159	NaN	1	0	Median	0.94	1.0032	NaN	1	0	Median	771370000	394330000	377050000	196460000	88965000	107490000	310040000	177800000	132240000	97801000	46456000	51346000	167080000	81110000	85967000	21842	1667	20676	134888;134889;134890;134891;134892	183215;183216;183217;183218;183219;183220;183221;183222	183221		1354	8	
GYIPIYTPFFMRK	1	Unmodified	1631.8534	0.85340611	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.663	78.996	3	1.12E-05	44216	160513_QHF_FH_JSI10Kac_6	90.926	71.868			2.9636	3.5346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.9636	3.5346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138610000	26741000	111870000	0	0	0	138610000	26741000	111870000	0	0	0	0	0	0	21843	1667	20677	134893	183223	183223			1	
GYISHQHQK	1	Unmodified	1096.5414	0.5413911	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			5.2699	4.7705	2	0.00045578	2687	160511_QHF_FH_JSI9i_3	84.568	36.007			0.60812	0.49258	NaN	1	1	Median	0.60812	0.49258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24039000	15406000	8632300	24039000	15406000	8632300	0	0	0	0	0	0	0	0	0	21844	2909	20678	134894;134895;134896	183224;183225;183226	183226			3	
GYISPYFINTSK	1	Unmodified	1388.6976	0.69761697	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.29	5	9	6			2	4	4	4	7	9	9	9	69.539	64.987	2;3	2.375E-39	34839	160513_QHF_FH_JSI11Kac_6	192.12	173.95			1.0198	0.99542	16.326	33	2	Median	1.112	0.92795	27.465	7	0	Median	0.80349	0.94094	8.1309	8	0	Median	1.0378	1.0019	6.3591	9	0	Median	1.0244	1.1307	13.52	9	2	Median	29515000000	14575000000	14940000000	5262400000	2418900000	2843500000	6483800000	3746400000	2737400000	9543000000	4694000000	4849000000	8225700000	3715400000	4510400000	21845	980	20679	134897;134898;134899;134900;134901;134902;134903;134904;134905;134906;134907;134908;134909;134910;134911;134912;134913;134914;134915;134916;134917;134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928;134929;134930	183227;183228;183229;183230;183231;183232;183233;183234;183235;183236;183237;183238;183239;183240;183241;183242;183243;183244;183245;183246;183247;183248;183249;183250;183251;183252;183253;183254;183255;183256;183257;183258;183259;183260;183261;183262;183263;183264;183265;183266;183267;183268;183269;183270;183271;183272;183273;183274;183275;183276;183277;183278;183279;183280;183281;183282;183283;183284;183285;183286;183287;183288;183289;183290;183291;183292;183293;183294;183295;183296;183297;183298;183299;183300;183301;183302;183303;183304;183305;183306;183307	183253			81	
GYIVIEDLWK	1	Unmodified	1234.6598	0.6597749	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.257	94.935	2	1.6894E-09	81941	160511_QHF_FH_JSI12i_2	132.9	98.821			0.96835	0.91099	12.54	4	0	Median	1.0157	0.89766	NaN	1	0	Median	0.73225	0.87367	NaN	1	0	Median	0.92321	0.92451	NaN	1	0	Median	1.0647	1.1495	NaN	1	0	Median	146590000	66442000	80150000	16398000	5937900	10461000	26340000	14599000	11741000	59989000	25684000	34305000	43864000	20221000	23644000	21846	4451	20680	134931;134932;134933;134934	183308;183309;183310;183311;183312;183313;183314;183315;183316	183309			9	
GYIWNYGAIPQTWEDPGHNDK	1	Unmodified	2460.1135	0.11347321	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.98		11	10						4	4	6	8	7	84.458	82.416	2;3	1.1939E-73	41682	160513_QHF_FH_JSI10Kac_6	210.06	195.95			1.0626	1.0584	17.951	21	4	Median	1.1794	1.0126	16.383	4	0	Median	0.95053	1.1749	15.78	5	1	Median	1.0704	1.0318	20.61	6	2	Median	0.94235	0.9936	11.79	6	1	Median	4128800000	1980600000	2148200000	493270000	211400000	281860000	639720000	328640000	311080000	1285100000	593130000	692010000	1710700000	847410000	863270000	21847	2641	20681	134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946;134947;134948;134949;134950;134951;134952;134953;134954;134955;134956;134957;134958;134959	183317;183318;183319;183320;183321;183322;183323;183324;183325;183326;183327;183328;183329;183330;183331;183332;183333;183334;183335;183336;183337;183338;183339;183340;183341;183342;183343;183344;183345;183346;183347;183348;183349;183350;183351;183352;183353;183354;183355;183356;183357;183358;183359;183360;183361;183362;183363;183364;183365;183366;183367;183368;183369;183370;183371;183372	183372			56	
GYIWNYGTLPQTWEDPHEK	1	Unmodified	2333.0753	0.075296793	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	2	2	4	5	82.831	79.804	3	3.0613E-34	41398	160513_QHF_FH_JSI10Kac_6	164.93	149.68			0.9707	1.0108	24.042	12	3	Median	1.0109	0.86359	18.233	2	2	Median	0.81197	0.98792	21.67	2	0	Median	0.98761	0.96508	27.338	4	1	Median	0.99573	1.0861	21.799	4	0	Median	1002600000	504200000	498420000	70637000	31431000	39207000	125750000	65638000	60110000	281610000	149320000	132280000	524630000	257810000	266820000	21848	4682	20682	134960;134961;134962;134963;134964;134965;134966;134967;134968;134969;134970;134971;134972	183373;183374;183375;183376;183377;183378;183379;183380;183381;183382;183383;183384;183385;183386;183387;183388;183389;183390;183391;183392;183393;183394;183395;183396;183397;183398	183398			26	
GYIWNYGTLPQTWEDPHEKDK	2	Acetyl (K)	2618.2078	0.20776753	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.185	73.869	3	8.5335E-08	40790	160513_QHF_FH_JSI11Kac_6	133.21	117.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11371000	11371000	0	0	0	0	0	0	0	11371000	11371000	0	0	0	0	21849	4682	20683	134973	183399	183399	3215		1	
GYIYVEAYK	1	Unmodified	1104.5492	0.54916182	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.471								4	2	2	1	1	2	58.461	48.116	2	0.00051081	24985	160513_QHF_FH_JSI12Kac_6	81.548	76.458			0.97846	1.0036	18.208	4	0	Median	0.97204	0.82794	NaN	1	0	Median	0.79038	0.94261	NaN	1	0	Median	1.2993	1.2689	NaN	1	0	Median	0.98493	1.0685	NaN	1	0	Median	28343000	14046000	14296000	8617400	3443000	5174300	8631100	5115400	3515700	7259000	3502300	3756700	3835100	1985300	1849700	21850	116	20684	134974;134975;134976;134977;134978;134979	183400;183401;183402;183403;183404;183405	183405			5	
GYIYVVK	1	Unmodified	840.47454	0.47454032	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.737							2	4	3	2	2	3	2	50.408	40.225	2	0.0054387	21908	160513_QHF_FH_JSI11Kac_6	94.669	68.842			0.98327	0.97087	13.544	9	0	Median	1.4171	1.2097	6.4477	2	0	Median	1.005	1.1867	1.7007	2	0	Median	0.95061	0.93681	3.6693	3	0	Median	0.83371	0.92797	0.41181	2	0	Median	67536000	33609000	33926000	16297000	6882700	9414600	15899000	7646900	8252000	26366000	14191000	12175000	8973500	4889000	4084500	21851	162	20685	134980;134981;134982;134983;134984;134985;134986;134987;134988	183406;183407;183408;183409;183410;183411;183412;183413	183408			8	
GYKGVTSR	1	Acetyl (K)	908.47158	0.4715802	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	19.513	10.701	2	0.00093837	8615	160513_QHF_FH_JSI11Kac_4	113.26	73.053			0.10257	0.10936	67.511	6	6	Median	NaN	NaN	NaN	0	0	Median	0.26146	0.31528	14.342	2	2	Median	0.077379	0.075635	24.378	2	2	Median	0.10257	0.10936	4.7628	2	2	Median	42165000	38002000	4162800	0	0	0	6895000	5365900	1529000	27613000	25741000	1872300	7657400	6895900	761480	21852	1484	20686	134989;134990;134991;134992;134993;134994	183414;183415;183416;183417;183418;183419	183415	1491		6	
GYKHPVLLLHPLGGWTK	2	Acetyl (K)	1957.0938	0.093787811	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.931	69.616	4	4.0343E-05	38115	160513_QHF_FH_JSI11Kac_6	77.39	68.681			0.40187	0.39653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40187	0.39653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38550000	27158000	11391000	0	0	0	0	0	0	38550000	27158000	11391000	0	0	0	21853	678	20687	134995	183420	183420	336		1	
GYKHTLNQIDSVK	2	Acetyl (K)	1543.7995	0.79945628	55	CON__P12763			yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.35								1	6	1	1	3	2	47.353	37.623	2;3	2.188E-25	20432	160513_QHF_FH_JSI11Kac_6	164.92	139.6		+	0.72543	0.75879	53.654	5	0	Median	1.3091	1.1064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.40476	0.38918	2.4888	2	0	Median	0.87772	0.9355	29.607	2	0	Median	215680000	138860000	76819000	4972200	2203800	2768400	0	0	0	165340000	111030000	54308000	45370000	25628000	19742000	21854	55	20688	134996;134997;134998;134999;135000;135001;135002	183421;183422;183423;183424;183425;183426;183427;183428;183429;183430;183431	183424	35		10	
GYKPPDEGPSEYQTIPLNK	2	Unmodified	2132.0426	0.042599681	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	52.61	51.988	3	1.4953E-13	44558	160511_QHF_FH_JSI12i_3	143.39	134.34			0.98352	1.0157	11.777	9	0	Median	1.1724	1.0157	NaN	1	0	Median	0.89906	1.0686	17.108	2	0	Median	0.97588	1.0122	8.2774	3	0	Plateau	0.90326	0.92268	15.955	3	0	Plateau	1680800000	813000000	867810000	185740000	86657000	99084000	392140000	186510000	205630000	609340000	294940000	314410000	493590000	244900000	248690000	21855	3905	20689	135003;135004;135005;135006;135007;135008;135009;135010;135011	183432;183433;183434;183435;183436;183437;183438;183439;183440;183441;183442	183441			11	
GYKQYWCTFK	2	Acetyl (K)	1421.6438	0.64380726	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.258	62.839	2	3.1375E-07	34088	160513_QHF_FH_JSI11Kac_6	113.12	86.018			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6125900	6125900	0	0	0	0	0	0	0	6125900	6125900	0	0	0	0	21856	3965	20690	135012	183443	183443	3013		1	
GYKYFGAAK	2	Acetyl (K)	1045.5233	0.52328142	5408	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1		1	1	3	48.37	38.168	2	0.0078958	19695	160513_QHF_FH_JSI10Kac_5	66.073	50.192			0.7061	0.76371	118.84	4	1	Median	NaN	NaN	NaN	0	0	Median	0.72183	0.85985	NaN	1	0	Median	0.69072	0.67831	NaN	1	0	Median	2.0543	2.1909	176.01	2	1	Median	16262000	8966600	7295400	0	0	0	3834100	2084000	1750100	5280900	3174200	2106700	7147000	3708400	3438600	21857	5408	20691	135013;135014;135015;135016;135017	183444;183445;183446;183447;183448;183449;183450	183449	3401		7	
GYLALCSYNCK	1	Unmodified	1347.5951	0.59514251	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.954						1	3	4	4	2	4	3	3	58.429	48.269	2	9.3223E-27	26435	160513_QHF_FH_JSI10Kac_6	178.94	165.35			0.92222	1.0032	21.243	12	0	Median	0.8844	0.75658	4.6221	2	0	Median	0.9011	1.0503	6.3644	4	0	Median	0.88803	0.87453	9.3968	3	0	Median	1.1759	1.2279	8.3851	3	0	Plateau	795420000	375160000	420260000	113400000	62302000	51097000	254400000	135290000	119120000	259360000	110930000	148430000	168260000	66640000	101620000	21858	1347	20692	135018;135019;135020;135021;135022;135023;135024;135025;135026;135027;135028;135029	183451;183452;183453;183454;183455;183456;183457;183458;183459;183460;183461;183462;183463;183464;183465;183466;183467;183468;183469;183470;183471;183472;183473;183474;183475	183475			25	
GYLAVAVVK	1	Unmodified	918.55385	0.55385327	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	5.65		4	3			1	3	9	6	6	7	7	6	60.131	52.76	2	6.0943E-11	26971	160513_QHF_FH_JSI9Kac_6	151.51	108.91		+	0.87387	0.91848	62.727	23	5	Median	1.1167	0.94985	12.731	4	0	Median	0.87955	1.0404	50.815	7	1	Median	0.88816	0.88862	75.654	6	2	Median	0.77598	0.82671	80.584	6	2	Median	1866100000	936780000	929280000	387170000	154500000	232660000	470290000	225770000	244520000	700050000	373350000	326700000	308560000	183160000	125400000	21859	66	20693	135030;135031;135032;135033;135034;135035;135036;135037;135038;135039;135040;135041;135042;135043;135044;135045;135046;135047;135048;135049;135050;135051;135052;135053;135054;135055	183476;183477;183478;183479;183480;183481;183482;183483;183484;183485;183486;183487;183488;183489;183490;183491;183492;183493;183494;183495;183496;183497;183498;183499;183500;183501;183502;183503;183504;183505;183506;183507	183503			30	
GYLDDPTVPR	0	Unmodified	1131.556	0.55603812	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			2	4	3	3	46.329	40.994	2	2.8201E-10	36951	160511_QHF_FH_JSI10i_1	140.35	125.58			0.96022	1.1185	20.673	12	0	Median	1.541	1.3199	9.4854	2	0	Median	1.0827	1.3106	11.333	4	0	Linear	0.9648	0.9848	15.082	3	0	Median	0.89986	0.96085	38.552	3	0	Median	5720600000	2564500000	3156100000	1435200000	592340000	842890000	1836000000	922280000	913750000	1579100000	734390000	844690000	870260000	315500000	554770000	21860	1000	20694	135056;135057;135058;135059;135060;135061;135062;135063;135064;135065;135066;135067	183508;183509;183510;183511;183512;183513;183514;183515;183516;183517;183518;183519;183520;183521;183522;183523;183524;183525;183526;183527;183528	183516			20	
GYLDKLEPSK	2	Acetyl (K)	1190.6183	0.61830402	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	0.756						2	3	2		1	2	2	2	64.73	54.418	2	1.1602E-11	29273	160513_QHF_FH_JSI10Kac_4	148.32	110.98			0.83386	0.89924	26.712	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1225	1.3361	2.0137	2	0	Median	0.81344	0.79522	2.9744	2	0	Median	0.83386	0.89924	NaN	1	0	Median	73371000	40128000	33243000	0	0	0	38306000	21515000	16792000	15236000	8822300	6413900	19828000	9790500	10038000	21861	1263	20695	135068;135069;135070;135071;135072;135073;135074	183529;183530;183531;183532;183533;183534;183535;183536;183537	183530	1158		9	
GYLFLLSPYQMVPPYEYQTAK	1	Unmodified	2507.2447	0.24467031	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.79	90.069	3	7.0175E-06	52028	160513_QHF_FH_JSI10Kac_6	74.505	66.318			0.53156	0.62	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53156	0.62	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87278000	51326000	35952000	0	0	0	87278000	51326000	35952000	0	0	0	0	0	0	21862	5361	20696	135075	183538	183538			1	
GYLFWTEWGQYPR	0	Unmodified	1701.794	0.79397698	2259	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.996	81.701	2	4.1174E-63	43611	160513_QHF_FH_JSI12Kac_6	228.2	193.48			1.1386	1.1557	9.9736	4	0	Median	1.3627	1.1546	NaN	1	0	Median	0.97154	1.1568	NaN	1	0	Median	1.3343	1.3104	NaN	1	0	Median	0.95451	1.0265	NaN	1	0	Median	233430000	111200000	122230000	41699000	17848000	23850000	121670000	59415000	62250000	43174000	20075000	23099000	26892000	13857000	13035000	21863	2259	20697	135076;135077;135078;135079	183539;183540;183541;183542;183543;183544;183545;183546	183543			8	
GYLFYFGK	1	Unmodified	993.496	0.49600404	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.578	71.294	2	0.0013655	38343	160513_QHF_FH_JSI9Kac_6	99.919	81.884			1.068	1.0047	25.578	4	0	Median	1.0362	0.86831	NaN	1	0	Median	0.65075	0.75569	NaN	1	0	Median	1.3825	1.3155	NaN	1	0	Median	1.1007	1.1625	NaN	1	0	Median	579730000	294860000	284870000	178300000	93046000	85249000	192770000	115930000	76840000	129870000	50870000	78999000	78792000	35008000	43784000	21864	1543	20698	135080;135081;135082;135083	183547;183548;183549;183550	183548			4	
GYLGPEQLPDCLK	1	Unmodified	1488.7283	0.72826518	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	3	2	1	67.184	66.562	2	1.1883E-22	60458	160511_QHF_FH_JSI11i_1	180.97	127.29			0.87852	0.97502	36.409	6	2	Median	1.2753	1.0633	NaN	1	0	Median	0.81693	0.97502	7.3706	2	1	Median	0.64509	0.62002	43.936	2	1	Median	1.2549	1.3192	NaN	1	0	Median	1715300000	805680000	909640000	211810000	76094000	135720000	405250000	218240000	187000000	650610000	312300000	338300000	447660000	199040000	248620000	21865	1504	20699	135084;135085;135086;135087;135088;135089;135090	183551;183552;183553;183554;183555;183556;183557;183558;183559;183560;183561;183562;183563	183552			13	
GYLIIVSR	0	Unmodified	919.5491	0.54910224	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.493								7	5	2	4	2	4	66.01	55.901	2	0.00041481	30231	160513_QHF_FH_JSI11Kac_6	113.89	84.513			1.1058	1.0317	22.625	10	2	Median	1.1668	0.99112	5.8698	2	0	Median	0.88222	1.0302	16.776	3	2	Median	0.97929	0.94069	11.336	2	0	Median	1.3321	1.4074	10.955	3	0	Median	735550000	358740000	376810000	168160000	76717000	91442000	302120000	162380000	139740000	176630000	81796000	94833000	88646000	37843000	50804000	21866	4668	20700	135091;135092;135093;135094;135095;135096;135097;135098;135099;135100;135101;135102	183564;183565;183566;183567;183568;183569;183570;183571;183572;183573;183574;183575;183576;183577	183565			14	
GYLISGSSYAR	0	Unmodified	1172.5826	0.58258722	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.69	6.43		4	3				1	4	4	4	4	4	4	45.276	39.35	2	2.8049E-27	20138	160513_QHF_FH_JSI10Kac_5	186.16	173.12			1.0021	1.0626	25.13	16	3	Median	1.3065	1.0955	44.593	4	1	Median	0.91176	1.107	7.8123	4	0	Median	1.0307	0.99445	16.179	4	1	Median	0.94756	1.0068	10.199	4	1	Median	2703500000	1273400000	1430100000	676520000	252970000	423550000	648700000	353110000	295600000	763810000	345290000	418520000	614430000	322000000	292430000	21867	3343	20701	135103;135104;135105;135106;135107;135108;135109;135110;135111;135112;135113;135114;135115;135116;135117;135118	183578;183579;183580;183581;183582;183583;183584;183585;183586;183587;183588;183589;183590;183591;183592;183593;183594;183595;183596;183597;183598;183599;183600;183601;183602;183603;183604;183605;183606	183596			29	
GYLLQIFTK	1	Unmodified	1081.6172	0.61718181	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	5.76			4					5	4	4	3	4	2	86.105	80.026	2	1.0382E-41	70976	160511_QHF_FH_JSI9i_3	218.63	148.36			1.0041	1.0403	11.606	11	0	Median	1.362	1.1031	20.077	3	0	Plateau	0.99723	1.1452	4.6918	3	0	Plateau	1.0803	1.0261	1.711	3	0	Plateau	0.92768	0.94841	8.9327	2	0	Median	7579200000	3466100000	4113100000	2025100000	801930000	1223200000	1894100000	943050000	951030000	1821400000	825970000	995410000	1838600000	895170000	943460000	21868	1395	20702	135119;135120;135121;135122;135123;135124;135125;135126;135127;135128;135129;135130;135131	183607;183608;183609;183610;183611;183612;183613;183614;183615;183616;183617;183618;183619;183620;183621;183622;183623;183624;183625;183626;183627;183628;183629;183630;183631;183632;183633;183634;183635	183620			29	
GYLLQIFTKPVQDRPTLFLEVIQR	1	Unmodified	2873.6167	0.61673488	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									4	2	2			94.719	87.352	3;4	1.3421E-40	51000	160513_QHF_FH_JSI10Kac_6	168.14	153.74			1.1002	1.1516	6.1842	4	0	Median	1.3306	1.1321	10.149	2	0	Median	0.96362	1.1516	2.9665	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	692510000	335730000	356780000	291860000	132870000	158990000	400650000	202860000	197790000	0	0	0	0	0	0	21869	1395	20703	135132;135133;135134;135135	183636;183637;183638;183639;183640;183641	183639			6	
GYLPSHYER	0	Unmodified	1120.5302	0.53015772	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	22.251	21.614	2;3	0.0008662	17691	160511_QHF_FH_JSI12i_3	69.423	62.528			0.93747	1.0151	25.311	4	0	Median	1.6312	1.3299	NaN	1	0	Median	1.0604	1.2352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81646	0.82941	0.821	2	0	Median	373740000	196240000	177490000	37418000	14433000	22985000	76115000	35677000	40438000	0	0	0	260200000	146140000	114070000	21870	3101	20704	135136;135137;135138;135139;135140;135141	183642;183643;183644;183645;183646;183647;183648	183646			6	
GYLQALASK	1	Unmodified	949.52328	0.52328142	5677;2983	Q9Y5S2;Q5VT25	CDC42BPB;CDC42BPA	Serine/threonine-protein kinase MRCK beta;Serine/threonine-protein kinase MRCK alpha	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			42.054	40.513	2	0.00019036	33965	160511_QHF_FH_JSI10i_3	99.136	33.883			1.1429	1.1303	67.143	2	1	Median	2.1569	1.8172	NaN	1	1	Median	0.60565	0.70311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77143000	33612000	43531000	34312000	11744000	22568000	42831000	21868000	20963000	0	0	0	0	0	0	21871	5677;2983	20705	135142;135143	183649;183650	183649			2	
GYLSPDLSK	1	Unmodified	978.50221	0.50221163	968	P10398	ARAF	Serine/threonine-protein kinase A-Raf	no	no	0	0	0	0			By MS/MS		1	0	1											1		38.511	38.228	2	0.049448	34303	160511_QHF_FH_JSI11i_1	44.349	17.387			0.16016	0.15505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16016	0.15505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	279450000	226660000	52792000	0	0	0	0	0	0	279450000	226660000	52792000	0	0	0	21872	968	20706	135144	183651	183651			1	
GYLTDLNSMIPTHGGDINDIKK	2	Unmodified	2401.1948	0.19476	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.494	76.218	3	1.4729E-07	66047	160511_QHF_FH_JSI12i_3	83.849	76.275			0.77762	0.80637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77762	0.80637	NaN	1	0	Median	39730000	27036000	12694000	0	0	0	0	0	0	0	0	0	39730000	27036000	12694000	21873	623	20707	135145	183652;183653	183652			2	
GYLTKEDLR	1	Acetyl (K)	1135.5873	0.58733824	1923	P60903	S100A10	Protein S100-A10	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13.8	0.433						1	3					1	3	54.295	44.111	2	4.678E-07	25334	160513_QHF_FH_JSI11Kac_4	138.98	93.894			2.4298	2.5371	135.49	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35831	0.35115	NaN	1	0	Median	3.2063	3.4515	43.53	2	2	Median	26294000	14614000	11680000	0	0	0	0	0	0	13652000	10581000	3071400	12642000	4033300	8608700	21874	1923	20708	135146;135147;135148;135149	183654;183655;183656;183657	183654	1931		4	
GYLVNWDVQR	0	Unmodified	1248.6251	0.62512073	4595	Q9GZN1	ACTR6	Actin-related protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.892	61.611	2	0.0015597	53178	160511_QHF_FH_JSI12i_3	87.308	76.143			1.2592	1.3004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2592	1.3004	NaN	1	0	Median	25362000	8646800	16715000	0	0	0	0	0	0	0	0	0	25362000	8646800	16715000	21875	4595	20709	135150	183658	183658			0	
GYLVTQDELDQTLEEFK	1	Unmodified	2026.9735	0.97351706	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	100.95	100.83	2	6.6002E-237	91502	160511_QHF_FH_JSI10i_1	347.5	316.95			0.92845	0.85577	10.07	6	4	Median	1.0172	0.83188	3.272	2	2	Median	0.87002	1.0313	NaN	1	0	Median	0.93586	0.91194	12.874	2	2	Median	0.81823	0.86021	NaN	1	0	Median	522100000	282500000	239600000	130010000	70114000	59899000	94408000	47846000	46561000	174970000	96794000	78176000	122710000	67748000	54965000	21876	1157	20710	135151;135152;135153;135154;135155;135156	183659;183660;183661;183662;183663;183664;183665;183666	183664			8	
GYMDLMPFINK	1	Unmodified	1327.6305	0.63046539	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	93.767	93.37	2	2.0947E-29	80501	160511_QHF_FH_JSI12i_2	183.65	176			1.058	1.0747	17.058	11	2	Median	1.0976	0.92729	9.4171	2	0	Median	0.88369	1.1066	21.413	3	1	Median	0.95959	0.97574	15.647	3	1	Median	1.207	1.29	12.345	3	0	Median	749990000	354960000	395030000	115850000	50783000	65065000	145370000	74902000	70466000	262890000	127070000	135830000	225880000	102210000	123670000	21877	328	20711	135157;135158;135159;135160;135161;135162;135163;135164;135165;135166;135167	183667;183668;183669;183670;183671;183672;183673;183674;183675;183676;183677;183678;183679;183680;183681;183682;183683;183684;183685;183686;183687;183688;183689;183690	183671			23	
GYMTQFPTFPSWLGK	1	Unmodified	1758.844	0.84396364	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			101.32	101.17	2	2.1815E-25	83801	160511_QHF_FH_JSI10i_3	221.28	182.01			0.96579	1.1208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96579	1.1208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123420000	62101000	61320000	0	0	0	123420000	62101000	61320000	0	0	0	0	0	0	21878	1430	20712	135168	183691	183691			1	
GYMTQFPTFPSWLGK	1	Oxidation (M)	1774.8389	0.83887826	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	97.076	97.092	2	2.6375E-16	84129	160511_QHF_FH_JSI12i_3	124.1	108.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21879	1430	20712	135169	183692	183692		1087	1	
GYMVVLR	0	Oxidation (M)	852.45276	0.45275902	4356	Q9BQA9	C17orf62	Uncharacterized protein C17orf62	yes	yes	0	0	1	0	By MS/MS	By matching	By matching	By matching	15.8	0.4								1	4	2	1	1	1	42.03	32.678	2	0.00050313	17996	160513_QHF_FH_JSI9Kac_5	114.67	75.449			1.1146	1.1153	14.374	5	0	Median	1.1927	1.0172	13.009	2	0	Median	1.1146	1.337	NaN	1	0	Median	1.2117	1.1602	NaN	1	0	Median	0.91184	0.98292	NaN	1	0	Median	45885000	21274000	24611000	22621000	10174000	12446000	7312500	3530700	3781800	9450500	4297900	5152500	6501500	3271000	3230500	21880	4356	20713	135170;135171;135172;135173;135174	183693	183693		2456	1	
GYMVVLR	0	Unmodified	836.45784	0.4578444	4356	Q9BQA9	C17orf62	Uncharacterized protein C17orf62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	55.757	45.844	2	6.7325E-17	24904	160513_QHF_FH_JSI11Kac_6	163.53	133.46			1.1446	1.0681	6.4171	7	1	Median	1.167	1.0065	5.0433	2	0	Median	0.89744	1.0779	1.291	2	0	Median	1.1762	1.1558	0.44983	2	1	Median	0.94932	1.018	NaN	1	0	Median	360360000	177250000	183110000	87051000	37662000	49390000	145120000	79444000	65678000	99445000	45279000	54167000	28745000	14869000	13876000	21881	4356	20713	135175;135176;135177;135178;135179;135180;135181	183694;183695;183696;183697;183698;183699;183700;183701;183702;183703	183696			10	
GYNATVLAYGQTGSGK	1	Unmodified	1585.7736	0.77363546	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	no	no	0	0	0	0			By MS/MS		14	0							1					1		55.736	44.83	2	0.031744	25945	160513_QHF_FH_JSI11Kac_4	47.288	30.262			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21882	662	20714	135182	183704	183704			1	
GYNDDYYEESYFTTR	0	Unmodified	1921.7643	0.76425257	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	60.114	59.47	2	1.1018E-260	53783	160511_QHF_FH_JSI10i_1	356.01	356.01			0.96763	0.99603	2.0613	4	0	Median	1.2346	1.0059	NaN	1	0	Median	0.87352	1.022	NaN	1	0	Median	1.013	0.98622	NaN	1	0	Median	0.92429	0.97579	NaN	1	0	Median	780200000	412130000	368080000	133200000	59295000	73907000	212270000	130040000	82229000	219710000	105980000	113740000	215010000	116810000	98202000	21883	1703	20715	135183;135184;135185;135186;135187	183705;183706;183707;183708;183709;183710;183711;183712;183713;183714	183712			10	
GYNPAEVGAAGK	1	Unmodified	1132.5513	0.55128709	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0				By MS/MS	7	6	1					1							2	32.811	24.391	2	6.3729E-10	21626	160511_QHF_FH_JSI12i_1	123.75	100.32			1.9527	2.0364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9527	2.0364	NaN	1	1	Median	1392900	399770	993140	0	0	0	0	0	0	0	0	0	1392900	399770	993140	21884	2358	20716	135188;135189	183715;183716	183715			2	
GYNPGLLVHPDLAYLQAEGGGDR	0	Unmodified	2411.187	0.18697251	1166	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	83.738	83.397	3	2.5409E-10	72440	160511_QHF_FH_JSI12i_3	98.3	90.678			1.0104	0.90796	31.549	6	4	Median	0.88072	0.75454	21.485	2	2	Median	0.60126	0.73343	NaN	1	0	Median	1.2076	1.1302	26.271	2	2	Median	1.3268	1.3978	NaN	1	0	Median	231660000	115690000	115970000	56979000	29807000	27172000	39362000	24057000	15304000	88274000	40272000	48002000	47049000	21557000	25491000	21885	1166	20717	135190;135191;135192;135193;135194;135195	183717;183718;183719;183720;183721;183722;183723;183724;183725	183725			9	
GYNVNDEK	1	Unmodified	937.41412	0.4141249	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	5.73	5	4	2		1	4	3			4	6	5	4	12.037	7.5674	2	1.1855E-29	7524	160511_QHF_FH_JSI11i_1	182.39	125.11			0.82583	0.89159	21.014	17	5	Median	1.2278	1.0937	23.048	3	2	Median	0.8449	1.0257	22.176	6	1	Median	0.83859	0.80807	21.858	4	1	Median	0.8095	0.86878	12.935	4	1	Median	13659000000	6855200000	6804000000	3978200000	1641300000	2336900000	5038900000	2866500000	2172500000	269850000	124100000	145750000	4372200000	2223300000	2148900000	21886	2101	20718	135196;135197;135198;135199;135200;135201;135202;135203;135204;135205;135206;135207;135208;135209;135210;135211;135212;135213;135214	183726;183727;183728;183729;183730;183731;183732;183733;183734;183735;183736;183737;183738;183739;183740;183741;183742;183743;183744;183745;183746;183747;183748;183749;183750;183751	183727			25	
GYNVNDEKAK	2	Acetyl (K)	1178.5568	0.5567664	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	25.984	18.602	2	4.1451E-07	11132	160513_QHF_FH_JSI12Kac_3	132.01	120.52			0.63105	0.68119	49.312	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0425	1.2285	21.6	2	0	Median	0.44534	0.42724	2.0882	2	0	Median	0.63105	0.68119	21.958	2	0	Median	95428000	61408000	34020000	0	0	0	22011000	11736000	10275000	45749000	32482000	13266000	27668000	17189000	10479000	21887	2101	20719	135215;135216;135217;135218;135219;135220	183752;183753;183754;183755;183756;183757;183758;183759;183760;183761;183762	183758	2212		11	
GYPDFNLIVNPYEPIRK	1	Unmodified	2034.0575	0.057461885	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	88.588	88.192	3	0.00066995	76284	160511_QHF_FH_JSI12i_2	53.255	43.971			1.3722	1.416	39.766	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8529	1.8002	50.476	2	2	Median	1.1654	1.2731	31.56	2	1	Median	89334000	40749000	48585000	0	0	0	0	0	0	48779000	19592000	29187000	40555000	21157000	19398000	21888	2693	20720	135221;135222;135223;135224	183763;183764;183765;183766	183764			4	
GYPEVALHFVK	1	Unmodified	1258.671	0.67100829	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.36		9	4						3	4	4	5	3	63.317	61.006	2;3	3.8246E-10	33391	160513_QHF_FH_JSI10Kac_6	107.06	75.87			0.97557	1.0158	46.585	16	5	Median	1.2596	1.0768	59.869	4	1	Median	0.83871	1.0235	71.571	4	1	Median	0.97525	0.98623	8.7601	5	2	Median	0.79888	0.89633	11.073	3	1	Plateau	1956000000	907610000	1048400000	364080000	133670000	230410000	442170000	190680000	251490000	643980000	314110000	329880000	505740000	269150000	236590000	21889	1805	20721	135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236;135237;135238;135239;135240	183767;183768;183769;183770;183771;183772;183773;183774;183775;183776;183777;183778;183779;183780;183781;183782;183783;183784;183785;183786;183787	183787			21	
GYPGDYTK	1	Unmodified	899.4025	0.40249759	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1			1	1	1	1	18.497	16.131	2	0.0026709	13846	160511_QHF_FH_JSI10i_1	85.064	36.56			1.0772	1.0945	3.0931	4	0	Median	1.3362	1.0874	NaN	1	0	Median	0.96128	1.1016	NaN	1	0	Median	1.1638	1.134	NaN	1	0	Median	0.99706	1.0525	NaN	1	0	Median	943400000	447670000	495730000	286510000	112030000	174480000	321760000	165910000	155850000	11197000	5719100	5478000	323940000	164010000	159920000	21890	1205	20722	135241;135242;135243;135244	183788;183789;183790;183791;183792	183789			5	
GYPGFIFIPNPFLPGYQWHWVK	1	Unmodified	2662.3525	0.35252169	2465	Q13686	ALKBH1	Alkylated DNA repair protein alkB homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.026	89.606	3	8.5067E-08	50948	160513_QHF_FH_JSI9Kac_6	125.18	117.64			1.5144	1.3542	42.412	4	4	Median	1.3453	1.1299	NaN	1	1	Median	0.67612	0.80142	NaN	1	1	Median	1.7048	1.6231	NaN	1	1	Median	2.0289	2.1186	NaN	1	1	Median	871210000	359800000	511410000	184820000	65288000	119530000	337900000	176790000	161110000	237790000	86587000	151200000	110700000	31132000	79567000	21891	2465	20723	135245;135246;135247;135248	183793;183794;183795;183796	183794			4	
GYPHLCSICDLPVHSNK	1	Unmodified	1995.9295	0.92950095	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.738	53.619	3	1.114E-06	45971	160511_QHF_FH_JSI12i_3	80.738	76.386			1.051	1.0314	1.0513	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1113	1.0391	NaN	1	0	Median	0.99399	1.0238	NaN	1	0	Median	114930000	55096000	59832000	0	0	0	0	0	0	50265000	22590000	27675000	64663000	32506000	32156000	21892	1556	20724	135249;135250	183797;183798;183799;183800;183801;183802	183801			6	
GYPHWPAR	0	Unmodified	982.47733	0.47733428	1758;532;3277	Q7Z4V5;Q9Y3E1;O75475;P51858	HDGFRP2;HDGFRP3;PSIP1;HDGF	Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.26	5.74		3	23						9	12	11	7	5	31.285	28.008	2;3	0.00011505	22635	160511_QHF_FH_JSI9i_3	113.08	63.772			0.93497	0.9136	10.419	31	8	Median	1.1218	0.92062	10.581	8	3	Median	0.77828	0.89169	13.189	11	2	Median	0.97964	0.92067	5.2778	7	1	Median	0.84047	0.8643	11.496	5	2	Median	4426500000	2248400000	2178100000	1566200000	693640000	872540000	1624100000	913690000	710390000	721570000	355490000	366080000	514680000	285630000	229050000	21893	3277;532;1758	20725	135251;135252;135253;135254;135255;135256;135257;135258;135259;135260;135261;135262;135263;135264;135265;135266;135267;135268;135269;135270;135271;135272;135273;135274;135275;135276;135277;135278;135279;135280;135281;135282;135283;135284;135285	183803;183804;183805;183806;183807;183808;183809;183810;183811;183812;183813;183814;183815;183816;183817;183818;183819;183820;183821;183822;183823;183824;183825;183826;183827;183828;183829;183830;183831;183832;183833;183834;183835;183836;183837;183838;183839;183840;183841;183842	183829			40	
GYPPEDIFNLVGK	1	Unmodified	1447.7347	0.73473076	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	92.764	92.342	2	1.292E-05	79555	160511_QHF_FH_JSI12i_2	123.63	110.67			1.0206	1.0337	12.213	9	0	Median	1.0759	0.91152	4.8225	2	0	Median	0.91477	1.0867	18.131	3	0	Median	1.0091	1.0102	7.4012	2	0	Median	1.0131	1.0845	6.7941	2	0	Median	974050000	480050000	494000000	226150000	115110000	111040000	269650000	140280000	129360000	268800000	119460000	149340000	209460000	105200000	104260000	21894	4943	20726	135286;135287;135288;135289;135290;135291;135292;135293;135294	183843;183844;183845;183846;183847;183848;183849;183850;183851;183852;183853;183854;183855;183856;183857	183844			15	
GYPPEDIFNLVGKK	2	Unmodified	1575.8297	0.82969378	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	81.1	80.426	3	7.0311E-05	70942	160511_QHF_FH_JSI9i_2	79.089	74.458			1.0947	1.1148	29.336	6	1	Median	0.96652	0.82797	55.689	2	1	Median	0.80921	0.97466	NaN	1	0	Median	1.1139	1.1135	NaN	1	0	Median	1.0975	1.143	3.3624	2	0	Median	248030000	126980000	121040000	54155000	27008000	27147000	42966000	24561000	18405000	52796000	30323000	22472000	98110000	45093000	53017000	21895	4943	20727	135295;135296;135297;135298;135299;135300	183858;183859;183860;183861;183862;183863;183864;183865;183866;183867;183868;183869	183861			12	
GYPTFHYYHYGK	1	Unmodified	1531.6884	0.68844927	2542	Q14554	PDIA5	Protein disulfide-isomerase A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	1	3	50.749	41.4	3;4	5.3943E-09	22470	160513_QHF_FH_JSI10Kac_6	97.214	90.31			1.138	1.2322	24.675	7	2	Median	1.0694	0.93478	NaN	1	0	Median	0.83576	0.99862	4.6628	2	0	Median	1.2741	1.2325	NaN	1	0	Median	1.1601	1.2557	21.106	3	2	Plateau	153380000	75299000	78076000	28164000	13119000	15045000	60314000	32460000	27855000	8655300	4950100	3705100	56241000	24770000	31471000	21896	2542	20728	135301;135302;135303;135304;135305;135306;135307	183870;183871;183872;183873;183874;183875;183876	183876			5	
GYPTIKFFR	1	Acetyl (K)	1169.6233	0.62332982	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.926	70.612	2	0.0033784	38742	160513_QHF_FH_JSI11Kac_6	81.296	41.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21897	867	20729	135308	183877	183877	567		1	
GYPTLLLFR	0	Unmodified	1078.6175	0.61751616	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	86.293	82.081	2	2.5961E-43	43182	160513_QHF_FH_JSI10Kac_6	207.6	168.81			1.0071	0.90604	19.442	14	0	Median	1.0071	0.85628	7.1521	4	0	Median	0.6694	0.89882	12.288	4	0	Linear	1.21	1.1402	7.7136	3	0	Median	1.1534	1.1753	10.756	3	0	Plateau	9553300000	4814000000	4739300000	2137200000	1050100000	1087100000	2745700000	1542400000	1203300000	2819000000	1323100000	1496000000	1851300000	898380000	952930000	21898	3603	20730	135309;135310;135311;135312;135313;135314;135315;135316;135317;135318;135319;135320;135321;135322	183878;183879;183880;183881;183882;183883;183884;183885;183886;183887;183888;183889;183890;183891;183892;183893;183894;183895;183896;183897;183898;183899;183900;183901;183902;183903;183904;183905;183906;183907;183908;183909;183910;183911;183912;183913;183914;183915	183914			38	
GYPTLLWFR	0	Unmodified	1151.6128	0.61276513	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	90.91	87.825	2	3.385E-43	43402	160513_QHF_FH_JSI11Kac_6	204.65	184.86			1.0165	0.91645	17.361	12	1	Median	1.0461	0.91082	8.4384	3	0	Plateau	0.70682	0.81786	2.5052	3	0	Plateau	1.2597	1.2118	7.7875	3	1	Plateau	1.1366	1.1802	13.585	3	0	Plateau	12829000000	6403400000	6425800000	2626500000	1282500000	1344000000	3692100000	2191800000	1500300000	4000000000	1767000000	2233100000	2510600000	1162200000	1348400000	21899	3603	20731	135323;135324;135325;135326;135327;135328;135329;135330;135331;135332;135333;135334	183916;183917;183918;183919;183920;183921;183922;183923;183924;183925;183926;183927;183928;183929;183930;183931;183932;183933;183934;183935;183936;183937;183938;183939;183940	183923			25	
GYQGYPGGDYSGGPQDGGAGK	1	Unmodified	1986.8344	0.83439782	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.112	33.649	2	5.7247E-12	30177	160511_QHF_FH_JSI11i_1	105.14	89.002			1.0944	1.1868	10.934	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96348	1.0985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.243	1.2822	NaN	1	1	Median	48825000	19870000	28955000	0	0	0	29726000	13324000	16403000	0	0	0	19099000	6546300	12552000	21900	167	20732	135335;135336;135337	183941;183942;183943	183941			3	
GYQQQDSQELLR	0	Unmodified	1463.7005	0.70047052	5680	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	32.034	31.663	2	1.3741E-05	28239	160511_QHF_FH_JSI10i_1	174.98	131.9			0.9045	0.92931	9.0948	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.87404	1.041	4.0131	2	2	Median	1.2271	1.1741	NaN	1	1	Median	0.90984	0.94733	NaN	1	0	Median	142830000	75381000	67446000	0	0	0	74465000	42563000	31901000	32984000	15152000	17832000	35377000	17665000	17712000	21901	5680	20733	135338;135339;135340;135341	183944;183945;183946;183947	183947			4	
GYQSVTLLLLHYK	1	Unmodified	1533.8555	0.8555146	4186	Q96NW4	ANKRD27	Ankyrin repeat domain-containing protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.707	73.461	3	3.605E-21	40147	160513_QHF_FH_JSI11Kac_6	159.08	150.48			1.3658	1.0954	19.688	4	0	Linear	1.4955	1.2577	NaN	1	0	Median	1.0585	1.2659	NaN	1	0	Median	0.9351	0.85806	NaN	1	0	Median	0.90263	0.95397	NaN	1	0	Median	463200000	224120000	239090000	210850000	89401000	121450000	155310000	82531000	72780000	57992000	30107000	27885000	39055000	22078000	16977000	21902	4186	20734	135342;135343;135344;135345	183948;183949;183950;183951;183952	183948			5	
GYQVTYVR	0	Unmodified	984.50288	0.50288033	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	2	2	1	3	37.542	27.941	2	0.00037414	15575	160513_QHF_FH_JSI9Kac_5	114.78	101.79			1.0551	1.147	8.3221	7	1	Median	1.3904	1.1758	3.1887	2	0	Median	0.87818	1.042	0.86553	2	0	Median	1.0309	1.0252	NaN	1	0	Median	1.112	1.2097	7.5288	2	1	Median	59739000	27674000	32064000	14249000	5738200	8510700	16218000	8733100	7485000	19689000	8973200	10716000	9582700	4229900	5352900	21903	971	20735	135346;135347;135348;135349;135350;135351;135352;135353	183953;183954;183955;183956;183957;183958;183959;183960;183961;183962;183963;183964;183965	183953			13	
GYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYK	1	Unmodified	3386.6095	0.60953683	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	3	3	4	97.096	96.96	3;4	1.8963E-100	83868	160511_QHF_FH_JSI12i_3	228.84	226.52			0.9656	0.97102	7.5893	10	1	Median	1.0761	0.91538	NaN	1	0	Median	0.75724	0.90793	6.9686	3	1	Plateau	1.0159	0.95338	5.7717	3	0	Median	1.101	1.1155	11.794	3	0	Plateau	1898800000	962370000	936430000	168360000	80257000	88099000	167800000	103230000	64569000	556730000	275360000	281370000	1005900000	503530000	502390000	21904	1372	20736	135354;135355;135356;135357;135358;135359;135360;135361;135362;135363;135364	183966;183967;183968;183969;183970;183971;183972;183973;183974;183975;183976;183977;183978;183979;183980;183981;183982;183983;183984;183985;183986;183987;183988;183989;183990;183991;183992;183993;183994;183995;183996;183997	183993			32	
GYSFSLTTFSPSGK	1	Unmodified	1477.7089	0.70890994	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.57	2	8	9					9	8	10	9	10	7	77.928	73.161	2;3	1.8808E-155	65685	160511_QHF_FH_JSI12i_3	298.58	282.44			1.0362	1.0261	13.081	32	2	Median	1.1395	0.98772	10.27	8	1	Median	0.89521	1.0761	5.5834	8	0	Median	1.0397	0.97561	17.883	9	1	Median	1.1013	1.1598	12.339	7	0	Median	9507100000	4753700000	4753400000	2428900000	1142000000	1286900000	2685100000	1447100000	1238000000	2487400000	1222200000	1265200000	1905700000	942440000	963270000	21905	1265	20737	135365;135366;135367;135368;135369;135370;135371;135372;135373;135374;135375;135376;135377;135378;135379;135380;135381;135382;135383;135384;135385;135386;135387;135388;135389;135390;135391;135392;135393;135394;135395;135396;135397;135398;135399;135400	183998;183999;184000;184001;184002;184003;184004;184005;184006;184007;184008;184009;184010;184011;184012;184013;184014;184015;184016;184017;184018;184019;184020;184021;184022;184023;184024;184025;184026;184027;184028;184029;184030;184031;184032;184033;184034;184035;184036;184037;184038;184039;184040;184041;184042;184043;184044;184045;184046;184047;184048;184049;184050;184051;184052;184053;184054;184055;184056;184057;184058;184059;184060;184061;184062;184063;184064;184065;184066;184067;184068;184069;184070;184071;184072	184060			75	
GYSFTTTAER	0	Unmodified	1131.5197	0.51965261	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.27	7	4	4		3	3	4	6	4	7	9	9	10	34.559	29.102	2	5.7432E-69	24450	160511_QHF_FH_JSI12i_3	239.66	220.88			0.92479	0.99777	14.761	33	19	Median	1.3268	1.1718	15.63	7	4	Median	0.85912	0.96375	7.7423	8	4	Median	0.89729	0.88806	8.5414	9	6	Median	0.90572	0.9309	12.06	9	5	Median	81244000000	39003000000	42242000000	18181000000	6929700000	11251000000	15786000000	8160500000	7625600000	23991000000	11551000000	12440000000	23287000000	12362000000	10925000000	21906	1916;2062	20738	135401;135402;135403;135404;135405;135406;135407;135408;135409;135410;135411;135412;135413;135414;135415;135416;135417;135418;135419;135420;135421;135422;135423;135424;135425;135426;135427;135428;135429;135430;135431;135432;135433;135434;135435	184073;184074;184075;184076;184077;184078;184079;184080;184081;184082;184083;184084;184085;184086;184087;184088;184089;184090;184091;184092;184093;184094;184095;184096;184097;184098;184099;184100;184101;184102;184103;184104;184105;184106;184107;184108;184109;184110;184111;184112;184113;184114;184115;184116;184117;184118;184119;184120;184121;184122;184123;184124;184125;184126;184127;184128;184129;184130;184131;184132;184133;184134;184135;184136;184137;184138;184139;184140;184141	184134			69	
GYSFTTTAEREIVR	0	Unmodified	1628.8158	0.81583463	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.91		4	8					2	3	6	6	2	3	54.815	51.122	2;3	1.8649E-20	41797	160511_QHF_FH_JSI9i_3	194.48	170.88			1.7778	1.6299	23.325	16	3	Median	1.9327	1.6299	7.8083	6	1	Median	1.7405	2.0125	18.921	5	1	Median	1.5886	1.5501	32.922	2	0	Median	1.1943	1.2122	9.5719	3	1	Plateau	7589800000	2599100000	4990700000	2866700000	897570000	1969200000	4077000000	1472700000	2604300000	323600000	93613000	229980000	322490000	135170000	187320000	21907	1916;2062	20739	135436;135437;135438;135439;135440;135441;135442;135443;135444;135445;135446;135447;135448;135449;135450;135451;135452	184142;184143;184144;184145;184146;184147;184148;184149;184150;184151;184152;184153;184154;184155;184156;184157;184158;184159	184150			18	
GYSFYLAHEFFDVLPVHK	1	Unmodified	2168.0731	0.073111949	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	91.233	82.806	3;4	2.0634E-33	44408	160513_QHF_FH_JSI12Kac_6	165.8	156.76			1.089	1.0784	10.992	9	2	Median	1.2562	1.0743	0.52959	2	0	Median	0.93484	1.1109	6.7075	2	0	Median	1.1272	1.103	6.5816	3	2	Median	0.91386	0.9646	23.352	2	0	Median	1976700000	958950000	1017800000	539280000	246390000	292890000	559130000	278220000	280910000	482840000	245690000	237150000	395470000	188650000	206820000	21908	3230	20740	135453;135454;135455;135456;135457;135458;135459;135460;135461	184160;184161;184162;184163;184164;184165;184166;184167;184168;184169;184170;184171;184172;184173	184168			13	
GYSLASLLAK	1	Unmodified	1021.5808	0.5807963	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	76.896	76.477	2	2.0955E-09	66341	160511_QHF_FH_JSI12i_3	130.75	114.54			1.2413	1.2786	16.47	4	3	Median	NaN	NaN	NaN	0	0	Median	1.2103	1.3801	NaN	1	1	Median	1.204	1.1111	9.0534	2	2	Median	1.4598	1.5125	NaN	1	0	Median	286540000	130330000	156210000	0	0	0	34726000	14721000	20005000	137770000	66529000	71245000	114040000	49083000	64956000	21909	4936	20742	135462;135463;135464;135465;135466	184174;184175;184176;184177;184178;184179	184178			6	
GYSLVSGGTDNHLVLVDLRPK	1	Unmodified	2239.1961	0.19608063	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	6		7	9						6	7	5	6	4	75.888	73.14	2;3;4	1.3321E-37	62680	160511_QHF_FH_JSI10i_3	196.89	192.94			0.93712	0.91063	17.449	22	5	Median	1.0587	0.89325	13.918	7	3	Median	0.79585	0.9338	12.232	5	1	Median	0.90422	0.84904	25.7	6	1	Median	0.83873	0.88518	19.223	4	0	Median	10968000000	5548100000	5420000000	2064200000	1008600000	1055600000	4389600000	2244700000	2144900000	2767200000	1391200000	1376000000	1747100000	903540000	843560000	21910	1415	20743	135467;135468;135469;135470;135471;135472;135473;135474;135475;135476;135477;135478;135479;135480;135481;135482;135483;135484;135485;135486;135487;135488	184180;184181;184182;184183;184184;184185;184186;184187;184188;184189;184190;184191;184192;184193;184194;184195;184196;184197;184198;184199;184200;184201;184202;184203;184204;184205;184206;184207;184208;184209;184210;184211;184212;184213;184214;184215;184216;184217;184218;184219;184220;184221;184222;184223;184224;184225	184197			46	
GYSMIVAYSLK	1	Oxidation (M)	1246.6268	0.62676022	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.433								6	2	2	1	2	3	67.597	57.238	2	3.1803E-10	29776	160513_QHF_FH_JSI12Kac_6	121.83	113.61			0.55245	0.55206	38.104	7	5	Median	0.50298	0.41917	38.947	2	2	Median	NaN	NaN	NaN	0	0	Median	0.49042	0.48163	40.074	2	1	Median	0.55245	0.58412	34.532	3	2	Median	59165000	37578000	21586000	19740000	13012000	6728000	0	0	0	8552200	5402000	3150200	30872000	19164000	11708000	21911	2279	20744	135489;135490;135491;135492;135493;135494;135495;135496	184226;184227;184228;184229;184230;184231;184232	184232		1877	7	
GYSMIVAYSLK	1	Unmodified	1230.6318	0.63184559	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	74.559	67.726	2	1.463E-27	37306	160513_QHF_FH_JSI10Kac_6	187.64	164.32			1.0805	1.0549	28.663	5	1	Median	0.85957	0.74212	NaN	1	0	Median	0.78655	0.93878	NaN	1	0	Median	1.0805	1.0549	NaN	1	0	Median	1.3282	1.3807	21.778	2	1	Median	343160000	166730000	176430000	74394000	31082000	43312000	74810000	44607000	30204000	91853000	45310000	46543000	102100000	45732000	56368000	21912	2279	20744	135497;135498;135499;135500;135501	184233;184234;184235;184236;184237;184238;184239	184239			6	
GYSSLLK	1	Unmodified	766.4225	0.42250475	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.18		1	4				1	3	3	2	3	4	3	36.626	30.722	2	0.0033087	16517	160513_QHF_FH_JSI9Kac_6	100.74	55.769			0.95821	0.94444	10.939	12	0	Median	1.037	0.87666	3.6871	2	0	Median	0.79084	0.93881	6.1485	3	0	Median	0.96014	0.91724	9.7344	4	0	Median	1.1144	1.1496	10.707	3	0	Plateau	1872600000	895930000	976670000	123790000	62179000	61616000	131380000	69470000	61914000	1120500000	519500000	601010000	496910000	244780000	252130000	21913	1128	20745	135502;135503;135504;135505;135506;135507;135508;135509;135510;135511;135512;135513	184240;184241;184242;184243;184244;184245;184246;184247;184248	184246			9	
GYSSLLKR	1	Acetyl (K)	964.53418	0.53418046	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		49.183	38.639	2	0.028265	21607	160513_QHF_FH_JSI11Kac_5	66.429	35.926			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2144100	2144100	0	0	0	0	0	0	0	2144100	2144100	0	0	0	0	21914	1128	20746	135514	184249	184249			1	
GYSTWLK	1	Unmodified	853.4334	0.43340378	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	44.627	40.089	2	0.0060804	33791	160511_QHF_FH_JSI12i_3	92.467	74.905			0.89203	0.96967	23.302	9	4	Median	1.1817	1.0009	4.4861	2	2	Median	0.78954	0.96064	16.452	2	1	Median	1.1313	1.1031	41.558	2	1	Median	0.86834	0.94737	32.431	3	0	Median	1874700000	877810000	996920000	275390000	126120000	149270000	291490000	151020000	140470000	493290000	200430000	292860000	814550000	400240000	414310000	21915	1426	20747	135515;135516;135517;135518;135519;135520;135521;135522;135523;135524;135525;135526	184250;184251;184252;184253;184254;184255;184256;184257;184258;184259;184260;184261;184262;184263	184259			14	
GYSTWLKLNK	2	Acetyl (K)	1250.6659	0.66592292	1426	P35241	RDX	Radixin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.645	64.263	2	2.9373E-34	34874	160513_QHF_FH_JSI11Kac_6	196.99	174.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20738000	20738000	0	0	0	0	0	0	0	20738000	20738000	0	0	0	0	21916	1426	20748	135527	184264	184264	1387		1	
GYSVEEVYDLAK	1	Unmodified	1371.6558	0.65581174	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.328	70.939	2	6.63E-15	63175	160511_QHF_FH_JSI9i_1	142	111.31			2.6511	2.7019	11.387	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.4679	2.8603	NaN	1	1	Median	3.4015	3.3648	NaN	1	1	Median	2.6511	2.7019	NaN	1	1	Median	287910000	78925000	208980000	0	0	0	101310000	27542000	73770000	103320000	20814000	82503000	83280000	30570000	52710000	21917	2584	20749	135528;135529;135530;135531	184265;184266;184267;184268	184268			4	
GYSYDLEVEQAYDLAR	0	Unmodified	1890.8636	0.86357268	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.18	0.386	9	2								3	3	2	3	78.985	78.485	2;3	8.649E-81	71122	160511_QHF_FH_JSI10i_1	247.67	237.88			1.0175	1.0295	6.6101	9	2	Median	1.2728	1.035	4.9393	2	2	Median	0.81449	0.94239	9.3595	3	0	Plateau	1.0715	1.0333	6.9589	2	0	Median	0.95537	0.99479	8.8664	2	0	Median	725360000	375060000	350300000	122600000	56000000	66602000	265250000	142960000	122290000	147190000	72978000	74213000	190320000	103130000	87192000	21918	1303	20750	135532;135533;135534;135535;135536;135537;135538;135539;135540;135541;135542	184269;184270;184271;184272;184273;184274;184275;184276;184277;184278;184279;184280;184281;184282;184283;184284;184285;184286;184287	184280			19	
GYSYDLEVEQAYDLARR	0	Unmodified	2046.9647	0.96468371	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	73.376	72.793	3	1.0518E-06	63183	160511_QHF_FH_JSI12i_3	109.83	99.359			1.1652	1.4874	18.495	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.2352	1.5161	NaN	1	0	Median	2.0506	1.9066	NaN	1	1	Median	1.2329	1.3318	12.928	2	0	Median	148520000	65938000	82580000	0	0	0	45606000	18096000	27510000	16368000	4271600	12096000	86544000	43570000	42974000	21919	1303	20751	135543;135544;135545;135546	184288;184289;184290;184291	184290			4	
GYTAEQVAAVK	1	Unmodified	1135.5873	0.58733824	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.289	29.691	2	5.8563E-06	26633	160511_QHF_FH_JSI12i_1	110.53	99.824			0.899	0.81028	11.405	4	1	Median	0.95417	0.77976	NaN	1	0	Median	0.62008	0.73695	NaN	1	1	Median	0.86053	0.842	NaN	1	0	Median	0.93918	0.95911	NaN	1	0	Median	244510000	124830000	119680000	52790000	26373000	26417000	59728000	31167000	28561000	43836000	22675000	21161000	88153000	44615000	43538000	21920	5114	20752	135547;135548;135549;135550	184292;184293;184294;184295	184293			4	
GYTIPLDK	1	Unmodified	905.48583	0.48583328	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	3.6	5.2	4						1			1	1	1	2	47.009	44.354	2	0.00093466	40418	160511_QHF_FH_JSI12i_1	96.253	77.522			0.92731	0.94521	6.3219	5	0	Median	1.1401	0.94403	NaN	1	0	Median	0.86589	1.0367	NaN	1	0	Median	0.97237	0.94521	NaN	1	0	Median	0.87096	0.90903	6.6633	2	0	Median	492860000	249170000	243690000	98983000	40420000	58563000	128960000	70641000	58320000	144990000	79209000	65780000	119920000	58900000	61024000	21921	2443	20753	135551;135552;135553;135554;135555	184296;184297;184298;184299	184297			4	
GYTLLSEGIDEMVGIIYKPK	2	Unmodified	2225.1654	0.16535735	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			96.539	89.146	3	3.0591E-104	49952	160513_QHF_FH_JSI9Kac_6	233.49	214.95			1.0257	1.0279	32.91	2	0	Median	1.5237	1.2973	NaN	1	0	Median	0.69048	0.81451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	255970000	136010000	119950000	122370000	56010000	66364000	133590000	80004000	53590000	0	0	0	0	0	0	21922	552	20754	135556;135557	184300;184301	184300			2	
GYTLVEYETYK	1	Unmodified	1364.65	0.64999808	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.34	4	4	6				3	5	2	7	6	5	6	59.989	55.474	2	3.1625E-60	47669	160511_QHF_FH_JSI12i_2	238.32	216.95			0.955	1.0063	24.449	23	5	Median	1.0494	0.89627	28.986	7	3	Median	0.83864	1.0133	8.6753	6	0	Median	1.0251	0.98496	7.1427	4	0	Median	0.94815	1.0224	35.885	6	2	Median	2747500000	1348200000	1399300000	519680000	246760000	272920000	702590000	385440000	317150000	785800000	366470000	419330000	739390000	349540000	389850000	21923	5678	20755	135558;135559;135560;135561;135562;135563;135564;135565;135566;135567;135568;135569;135570;135571;135572;135573;135574;135575;135576;135577;135578;135579;135580;135581	184302;184303;184304;184305;184306;184307;184308;184309;184310;184311;184312;184313;184314;184315;184316;184317;184318;184319;184320;184321;184322;184323;184324;184325;184326;184327;184328;184329;184330;184331;184332;184333;184334;184335;184336;184337;184338;184339;184340;184341;184342;184343;184344;184345	184307			43	
GYTNWAIGLSVADLIESMLK	1	Unmodified	2180.1187	0.11874151	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	5.6		2	7	3		3		1	18	9	11	8	6	104.11	98.57	2;3	2.9285E-157	54458	160513_QHF_FH_JSI9Kac_6	355.95	300.38			0.99663	1.0248	19.502	25	8	Median	1.3494	1.1563	15.423	8	4	Median	0.87274	0.98927	23.184	8	2	Median	0.91345	0.85811	19.134	5	1	Median	0.87445	0.93912	10.77	4	1	Median	20522000000	9722900000	10799000000	8252400000	3366900000	4885400000	9955100000	5139800000	4815200000	829960000	429550000	400410000	1484700000	786550000	698150000	21924	864	20756	135582;135583;135584;135585;135586;135587;135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598;135599;135600;135601;135602;135603;135604;135605;135606;135607;135608;135609;135610;135611;135612;135613;135614;135615	184346;184347;184348;184349;184350;184351;184352;184353;184354;184355;184356;184357;184358;184359;184360;184361;184362;184363;184364;184365;184366;184367;184368;184369;184370;184371;184372;184373;184374;184375;184376;184377;184378;184379;184380;184381;184382;184383;184384;184385;184386;184387;184388;184389;184390	184370			44	
GYTNWAIGLSVADLIESMLK	1	Oxidation (M)	2196.1137	0.11365613	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									7	3	2		2	99.765	91.504	2;3	1.5261E-57	54863	160513_QHF_FH_JSI10Kac_6	202.01	170.87			1.0994	1.0604	13.172	7	2	Median	1.2991	1.1125	11.923	3	1	Median	0.82962	0.98243	10.799	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93903	0.98793	22.597	2	1	Median	1380700000	653080000	727580000	477850000	219560000	258290000	525010000	266450000	258560000	0	0	0	377790000	167070000	210720000	21925	864	20756	135616;135617;135618;135619;135620;135621;135622	184391;184392;184393;184394;184395;184396;184397;184398	184397		403	8	
GYTNWAIGLSVADLIESMLKNLSR	1	Unmodified	2650.3789	0.37887238	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.7	97.984	3	6.7891E-93	57999	160513_QHF_FH_JSI10Kac_6	220.23	201.67			0.47654	0.55839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47654	0.55839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239160000	156810000	82349000	0	0	0	239160000	156810000	82349000	0	0	0	0	0	0	21926	864	20757	135623	184399	184399			1	
GYTSIFNMETQQR	0	Unmodified	1573.7195	0.7194914	381	O43815	STRN	Striatin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	61.103	60.674	2	2.0503E-24	52250	160511_QHF_FH_JSI12i_3	158.05	122.54			0.70495	0.75667	33.762	2	1	Median	NaN	NaN	NaN	0	0	Median	0.48235	0.59597	NaN	1	0	Median	1.0303	0.9607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92645000	56042000	36603000	0	0	0	47537000	36129000	11408000	45108000	19912000	25195000	0	0	0	21927	381	20758	135624;135625;135626	184400;184401;184402	184402			3	
GYTSWAIGLSVADLAESIMK	1	Oxidation (M)	2127.0558	0.055806905	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	2	2	4	4	98.794	93.183	2;3	2.823E-139	50082	160513_QHF_FH_JSI11Kac_6	271.64	244.55			1.1029	1.0027	20.436	12	1	Median	1.2169	1.0367	4.5462	2	1	Median	1.2137	1.4457	8.7454	2	0	Median	1.1029	1.0356	7.9825	4	0	Median	0.81409	0.83976	11.956	4	0	Median	2701800000	1354100000	1347700000	447270000	195360000	251910000	522270000	259320000	262940000	647130000	320340000	326800000	1085200000	579090000	506080000	21928	761	20759	135627;135628;135629;135630;135631;135632;135633;135634;135635;135636;135637;135638	184403;184404;184405;184406;184407;184408;184409;184410;184411;184412;184413;184414;184415;184416;184417;184418	184406		264	16	
GYTSWAIGLSVADLAESIMK	1	Unmodified	2111.0609	0.060892282	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.54		7	8	2					15	7	13	8	4	102.11	98.168	2;3	6.037E-157	55138	160513_QHF_FH_JSI10Kac_6	345.38	304.81			0.75472	0.86723	21.011	21	7	Median	1.0603	0.90249	23.358	5	1	Median	0.72175	0.8649	22.585	8	6	Median	1.2498	1.1848	20.83	4	0	Linear	0.73792	0.76651	3.7056	4	0	Median	11333000000	5986000000	5347200000	3234600000	1590100000	1644500000	3767200000	2094800000	1672400000	1391100000	614570000	776560000	2940300000	1686600000	1253800000	21929	761	20759	135639;135640;135641;135642;135643;135644;135645;135646;135647;135648;135649;135650;135651;135652;135653;135654;135655;135656;135657;135658;135659;135660;135661;135662;135663;135664;135665;135666;135667;135668;135669;135670	184419;184420;184421;184422;184423;184424;184425;184426;184427;184428;184429;184430;184431;184432;184433;184434;184435;184436;184437;184438;184439;184440;184441;184442;184443;184444;184445;184446;184447;184448;184449;184450;184451;184452;184453;184454;184455;184456;184457;184458;184459;184460;184461;184462;184463;184464	184458			46	
GYVFQMEMIVR	0	2 Oxidation (M)	1403.6577	0.65774277	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By MS/MS	15	0								4		1	2		1	64.752	54.058	2	0.00080272	27513	160513_QHF_FH_JSI10Kac_5	68.735	63.794			0.92914	1.0035	6.032	4	0	Median	1.2616	1.0136	NaN	1	0	Median	0.85698	1.0073	10.345	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9282	0.99356	NaN	1	0	Median	11153000	5696100	5456800	2536500	1018900	1517600	5219300	2838500	2380800	0	0	0	3397000	1838700	1558400	21930	445	20760	135671;135672;135673;135674	184465;184466;184467;184468;184469;184470	184470		173;174	6	
GYVKEQFAWR	1	Acetyl (K)	1324.6564	0.65642086	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.301	59.788	2	6.4622E-19	32366	160513_QHF_FH_JSI11Kac_6	166.19	138.45			0.032495	0.031733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.032495	0.031733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44838000	42613000	2225300	0	0	0	0	0	0	44838000	42613000	2225300	0	0	0	21931	1595	20761	135675	184471	184471	1623		1	
GYVLPVVSYIR	0	Unmodified	1264.718	0.71795849	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	87.14	86.435	2	0.0036551	74689	160511_QHF_FH_JSI12i_2	55.549	32.121			0.85563	0.93567	8.6912	3	1	Median	NaN	NaN	NaN	0	0	Median	0.85563	1.0445	NaN	1	1	Median	0.91465	0.93567	NaN	1	0	Median	0.83756	0.87985	NaN	1	0	Median	57583000	31429000	26154000	0	0	0	22810000	10427000	12383000	20836000	12730000	8106200	13937000	8273100	5664200	21932	3440	20762	135676;135677;135678	184472;184473	184472			2	
GYVNSSSQIK	1	Unmodified	1081.5404	0.54038805	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.96	4	4				3	3			2	4	4	4	18.754	15.083	2	2.559E-11	13043	160511_QHF_FH_JSI12i_1	151.44	128.01			1.0173	1.0314	43.604	14	5	Median	1.1366	0.9483	92.54	2	1	Median	0.90882	1.0722	40.576	4	1	Median	1.0975	1.0757	32.699	4	2	Median	0.95616	1.0016	48.603	4	1	Median	835640000	432110000	403530000	174420000	83748000	90676000	214660000	124580000	90080000	186700000	86637000	100070000	259860000	137150000	122710000	21933	2902	20763	135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692	184474;184475;184476;184477;184478;184479;184480;184481;184482;184483;184484;184485;184486;184487;184488;184489	184476			15	
GYVPNLLGIIPYAGIDLAVYELLK	1	Unmodified	2603.4615	0.46146302	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	103.93	94.49	3	0.0025684	51938	160513_QHF_FH_JSI12Kac_6	54.559	47.113			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21934	3071	20764	135693	184490	184490			1	
GYVPSNYIR	0	Unmodified	1067.54	0.53999412	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			41.244	40.237	2	0.0027151	35214	160511_QHF_FH_JSI9i_2	63.48	38.557			0.64725	0.65535	17.986	2	1	Median	0.88548	0.74423	NaN	1	0	Median	0.47311	0.57708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48118000	31924000	16194000	23020000	13734000	9286600	25098000	18191000	6907000	0	0	0	0	0	0	21935	3169	20765	135694;135695	184491;184492	184491			2	
GYVTPVK	1	Unmodified	762.42759	0.42759012	875	P07711;Q5NE16;P43235;O60911	CTSL;CTSL3P;CTSK;CTSV	Cathepsin L1;Cathepsin L1 heavy chain;Cathepsin L1 light chain;Putative inactive cathepsin L-like protein CTSL3P;Cathepsin K;Cathepsin L2	yes	no	0	0	0	0	By MS/MS				3	0			1							1				19.597	18.395	2	0.01187	14807	160511_QHF_FH_JSI9i_3	60.358	43.431			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21936	875	20766	135696	184493	184493			1	
GYVVGQALQLHADVENQSGK	1	Unmodified	2112.06	0.05998108	3543	Q8N5I2	ARRDC1	Arrestin domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		58.547	58.547	3	4.6696E-05	48918	160511_QHF_FH_JSI10i_3	66.325	57.278			1.1424	1.0528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1424	1.0528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20417000	10920000	9497100	0	0	0	0	0	0	20417000	10920000	9497100	0	0	0	21937	3543	20767	135697;135698	184494;184495	184495			2	
GYVVRISGGNDK	1	Unmodified	1263.6571	0.65714914	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			32.622	24.31	3	0.037393	13789	160513_QHF_FH_JSI10Kac_6	42.789	7.2776			0.11965	0.14189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11965	0.14189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6263900	5924700	339160	0	0	0	6263900	5924700	339160	0	0	0	0	0	0	21938	2018	20768	135699	184496	184496			1	
GYVVWQEVFDNK	1	Unmodified	1482.7143	0.71432967	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	3	1	84.159	79.174	2	6.339E-19	41043	160513_QHF_FH_JSI11Kac_6	152.07	132.41			0.93847	1.0922	11.772	4	3	Linear	1.0171	0.84214	NaN	1	1	Median	0.79936	0.95477	NaN	1	1	Median	1.1408	1.1195	NaN	1	0	Median	0.86595	0.93359	NaN	1	1	Median	125030000	67446000	57585000	25595000	13047000	12548000	49537000	28187000	21350000	26119000	10760000	15359000	23780000	15452000	8327800	21939	860	20769	135700;135701;135702;135703;135704;135705	184497;184498;184499;184500;184501;184502	184497			6	
GYWGNKIGK	2	Acetyl (K)	1063.5451	0.5450795	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	51.812	42.06	2	4.4215E-05	22801	160513_QHF_FH_JSI11Kac_6	126.28	115.21			0.11787	0.11616	108.82	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27072	0.25075	NaN	1	0	Median	0.051322	0.053814	NaN	1	1	Median	68592000	55056000	13535000	0	0	0	0	0	0	61368000	48060000	13308000	7223500	6996600	226930	21940	1084	20770	135706;135707	184503;184504;184505	184503	931;932		3	
GYWWHFK	1	Unmodified	1022.4763	0.47627165	544	O75586	MED6	Mediator of RNA polymerase II transcription subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	2	3	67.47	58.468	2;3	0.00044612	31815	160513_QHF_FH_JSI10Kac_6	102.98	99.233			1.0764	1.1977	26.062	6	3	Median	1.3655	1.1892	NaN	1	0	Median	0.94734	1.1357	12.134	2	1	Median	1.0575	1.0312	NaN	1	1	Median	1.4529	1.5893	38.991	2	1	Median	95274000	47244000	48030000	13262000	7452500	5810000	51794000	25858000	25936000	12069000	5610700	6458300	18148000	8322500	9825800	21941	544	20771	135708;135709;135710;135711;135712;135713;135714;135715;135716;135717	184506;184507;184508;184509;184510;184511;184512;184513;184514;184515;184516;184517	184515			12	
GYYAAVEAKK	2	Unmodified	1098.571	0.5709599	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.772	17.811	2	0.00032731	14352	160511_QHF_FH_JSI12i_3	78.149	53.226			0.43997	0.42685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43997	0.42685	NaN	1	0	Median	32657000	22172000	10486000	0	0	0	0	0	0	0	0	0	32657000	22172000	10486000	21942	2677	20772	135718	184518	184518			1	
GYYDNPK	1	Unmodified	855.37628	0.37628284	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	15.647	8.0924	2	0.041935	6350	160513_QHF_FH_JSI12Kac_4	64.803	60.786			1.6171	1.7534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6171	1.7534	NaN	1	1	Median	4617100	1322700	3294400	0	0	0	0	0	0	0	0	0	4617100	1322700	3294400	21943	2508	20773	135719	184519	184519			1	
GYYEVTPPTLVQTQVEGGATLFK	1	Unmodified	2497.2741	0.27405618	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								3	5	2	2	98.753	98.63	2;3	5.253E-24	89217	160511_QHF_FH_JSI10i_1	155.49	151.5			0.90165	1.0055	13.355	11	6	Median	0.90033	0.7705	17.862	3	2	Plateau	0.82138	0.93348	12.152	4	2	Median	1.0677	1.0588	10.193	2	1	Median	1.0077	1.0115	0.22395	2	1	Median	484530000	256550000	227970000	84131000	44461000	39671000	185800000	101500000	84302000	112680000	60481000	52200000	101910000	50114000	51799000	21944	375	20774	135720;135721;135722;135723;135724;135725;135726;135727;135728;135729;135730;135731	184520;184521;184522;184523;184524;184525;184526;184527;184528;184529;184530;184531;184532;184533;184534;184535;184536;184537;184538;184539;184540;184541	184530			22	
GYYFGTSSITGDLSDNHDVISLK	1	Unmodified	2488.1758	0.1757987	4644	Q9H0V9	LMAN2L	VIP36-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	86.676	86.222	3	8.2853E-16	74810	160511_QHF_FH_JSI12i_3	126.61	120.11			1.2199	1.2108	12.801	5	2	Median	NaN	NaN	NaN	0	0	Median	0.92202	1.1463	NaN	1	1	Median	1.2765	1.2108	0.0042406	2	1	Median	1.2324	1.3004	23.221	2	0	Median	222630000	92225000	130410000	0	0	0	29844000	14056000	15789000	81974000	32863000	49111000	110810000	45306000	65509000	21945	4644	20775	135732;135733;135734;135735;135736;135737	184542;184543;184544;184545;184546;184547;184548;184549;184550	184550			9	
GYYSLETFTYLLALK	1	Unmodified	1780.9287	0.92873912	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.421	89.003	2;3	3.3697E-139	53158	160513_QHF_FH_JSI10Kac_6	341.6	295.14			1.0666	1.0608	17.413	8	0	Median	1.4449	1.2514	17.334	2	0	Median	0.8995	1.0711	27.289	2	0	Median	1.0009	0.93922	4.9357	2	0	Median	1.0544	1.1242	14.25	2	0	Median	1915600000	935710000	979920000	382870000	166250000	216620000	434520000	240330000	194180000	525450000	262930000	262520000	572790000	266200000	306590000	21946	160	20776	135738;135739;135740;135741;135742;135743;135744;135745	184551;184552;184553;184554;184555;184556;184557;184558;184559;184560;184561;184562;184563;184564;184565	184563			15	
GYYSPGIVSTR	0	Unmodified	1198.5982	0.59823728	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	39.988	39.321	2	0.00016166	33468	160511_QHF_FH_JSI12i_3	87.913	67.584			0.65405	0.67397	30.342	4	1	Median	NaN	NaN	NaN	0	0	Median	0.65161	0.78488	40.642	2	1	Median	0.80844	0.77141	NaN	1	0	Median	0.52915	0.53133	NaN	1	0	Median	178870000	117850000	61015000	0	0	0	87738000	64471000	23267000	36405000	18896000	17508000	54727000	34488000	20239000	21947	2305	20777	135746;135747;135748;135749;135750;135751;135752;135753	184566;184567;184568;184569;184570;184571;184572;184573;184574	184574			9	
GYYSPYSVSGSGSTAGSR	0	Unmodified	1781.7857	0.78565671	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	37.661	37.03	2	1.4052E-22	33612	160511_QHF_FH_JSI12i_1	172.09	146.62			1.0768	1.0565	10.948	7	0	Median	1.2169	1.0035	NaN	1	0	Median	0.78794	0.95434	4.0937	2	0	Median	1.2241	1.2095	6.6885	2	0	Median	1.027	1.1027	6.0445	2	0	Median	303210000	158100000	145110000	34967000	14878000	20089000	87139000	51329000	35810000	104360000	51408000	52953000	76741000	40482000	36259000	21948	2636	20778	135754;135755;135756;135757;135758;135759;135760;135761	184575;184576;184577;184578;184579;184580;184581;184582;184583;184584;184585;184586	184581			12	
GYYSSAFASSTNAYMLIYR	0	Unmodified	2163.9935	0.993541	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	85.343	75.962	2;3	6.8917E-211	43602	160513_QHF_FH_JSI10Kac_6	297.24	251.37			1.1777	1.1887	15.139	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4237	1.3714	21.914	2	0	Median	1.113	1.1887	1.7002	2	0	Median	115760000	53179000	62577000	0	0	0	0	0	0	72553000	30039000	42514000	43204000	23140000	20064000	21949	4152	20779	135762;135763;135764;135765;135766	184587;184588;184589	184589			3	
GYYYNGDSAGLPAR	0	Unmodified	1502.679	0.6790068	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	43.041	42.541	2	0.00047011	38292	160511_QHF_FH_JSI10i_1	87.298	64.657			1.1293	1.1356	3.4135	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1505	1.1085	NaN	1	1	Median	1.1085	1.1633	NaN	1	1	Median	40466000	16441000	24025000	0	0	0	0	0	0	19810000	8194600	11616000	20656000	8246400	12409000	21950	680	20780	135767;135768;135769	184590;184591;184592	184592			3	
HAAADEALK	1	Unmodified	924.46649	0.46649483	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	8.1193	7.6405	2	3.6603E-06	5377	160511_QHF_FH_JSI11i_2	135.83	90.749			0.47198	0.51106	174.9	5	5	Median	5.4275	4.566	NaN	1	1	Median	0.092754	0.11229	NaN	1	1	Median	0.24487	0.24748	NaN	1	1	Median	1.551	1.6885	169.01	2	2	Median	282660000	177610000	105050000	62447000	26690000	35757000	55542000	50200000	5342000	59428000	52627000	6800800	105240000	48095000	57148000	21951	264	20781	135770;135771;135772;135773;135774;135775	184593;184594;184595;184596;184597;184598	184597			6	
HAAEEEIYTNLNQK	1	Unmodified	1658.79	0.79001381	5513	Q9Y2D4	EXOC6B	Exocyst complex component 6B	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	35.748	34.407	3	1.4841E-05	29331	160511_QHF_FH_JSI12i_2	76.073	69.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21952	5513	20782	135776;135777	184599;184600	184600			2	
HAAENPGKYNILGTNTIMDK	2	Acetyl (K)	2228.0896	0.089566649	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.7	0.471								1	2			2	1	74.647	64.826	3	3.0882E-13	35146	160513_QHF_FH_JSI11Kac_6	122.19	98.63			0.37003	0.35769	3.1946	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37003	0.35769	3.1946	2	0	Median	NaN	NaN	NaN	0	0	Median	105780000	74559000	31225000	0	0	0	0	0	0	97533000	66308000	31225000	8250400	8250400	0	21953	2161	20783	135778;135779;135780	184601;184602;184603;184604;184605	184602	2275		5	
HAAENPGKYNILGTNTIMDK	2	Acetyl (K);Oxidation (M)	2244.0845	0.084481271	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	1	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		66.817	56.41	3	0.0024888	30400	160513_QHF_FH_JSI11Kac_6	63.606	50.569			0.34265	0.33959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34265	0.33959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34366000	26113000	8252600	0	0	0	1524900	0	1524900	32841000	26113000	6727700	0	0	0	21954	2161	20783	135781;135782;135783	184606;184607;184608	184606	2275	1809	3	
HAALQDIGK	1	Unmodified	951.51378	0.51377937	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	18.063	17.425	2	0.00042921	14636	160511_QHF_FH_JSI9i_2	90.64	67.9			3.8397	4.3912	132.82	5	5	Median	3.1072	2.7088	NaN	1	1	Median	5.0957	6.1824	NaN	1	1	Median	1.5483	1.5622	235.48	2	2	Median	3.8397	4.3912	NaN	1	1	Median	295640000	92540000	203110000	33641000	10223000	23418000	50920000	6299700	44620000	145620000	58081000	87535000	65468000	17936000	47533000	21955	5414	20784	135784;135785;135786;135787;135788;135789	184609;184610;184611;184612;184613;184614	184611			6	
HAASTVQILGAEK	1	Unmodified	1323.7147	0.71466402	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		3	1	30.358	29.985	2	0.00057287	25360	160511_QHF_FH_JSI11i_2	87.667	68.689			0.24843	0.2495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24843	0.2495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85801000	32689000	53112000	7465800	0	7465800	0	0	0	67572000	21925000	45646000	10764000	10764000	0	21956	5544	20785	135790;135791;135792;135793;135794	184615;184616;184617;184618;184619	184617			5	
HAAVLVLR	0	Unmodified	877.54977	0.54977095	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		37.642	28.611	2	0.023858	15817	160513_QHF_FH_JSI11Kac_6	62.978	36.87			0.85881	0.89587	234.63	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14777	0.1705	NaN	1	1	Median	4.9911	4.7073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23672000	12633000	11039000	0	0	0	13616000	10696000	2920200	10056000	1937100	8118400	0	0	0	21957	1535	20786	135795;135796	184620;184621	184620			2	
HAAYILLTGPADSEAPGLVSVIK	1	Unmodified	2321.2631	0.26309756	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	94.535	94.446	3	4.4887E-12	81988	160511_QHF_FH_JSI12i_3	118.32	113.32			0.4377	0.4214	156.82	6	6	Median	0.073928	0.070156	NaN	1	1	Median	0.091716	0.10441	NaN	1	1	Median	1.1977	1.1119	120.75	2	2	Median	1.0553	1.0592	146.8	2	2	Median	268280000	139020000	129270000	2833600	2774200	59478	4738000	4309900	428070	89481000	43445000	46036000	171230000	88490000	82742000	21958	4647	20787	135797;135798;135799;135800;135801;135802	184622;184623;184624;184625;184626;184627;184628	184628			7	
HAAYSVGWEMAPAGAPGPGR	0	Unmodified	1980.9265	0.92646449	3944	Q969P0	IGSF8	Immunoglobulin superfamily member 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.447	56.324	3	1.1778E-05	48420	160511_QHF_FH_JSI12i_3	62.203	56.192			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21959	3944	20788	135803;135804	184629;184630	184630			2	
HADDDRPPR	0	Unmodified	1077.4952	0.49516919	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			4.7649	4.3579	3	0.00041185	2349	160511_QHF_FH_JSI10i_2	74.267	57.036			0.74234	0.9203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74234	0.9203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59852000	32216000	27636000	0	0	0	59852000	32216000	27636000	0	0	0	0	0	0	21960	2502	20789	135805	184631	184631			1	
HADHSSLTLGSGSSTTR	0	Unmodified	1712.8078	0.80778914	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	14.527	14.59	3	4.7779E-05	11394	160511_QHF_FH_JSI12i_3	56.746	38.015			2.0404	2.0405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0404	2.0405	NaN	1	1	Median	26541000	4521600	22020000	0	0	0	0	0	0	0	0	0	26541000	4521600	22020000	21961	3290	20790	135806	184632	184632			1	
HADIVTTTTHK	1	Unmodified	1222.6306	0.63060004	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.13		16	13						6	9	6	10	10	11.35	9.8225	2;3	5.9902E-07	7982	160511_QHF_FH_JSI9i_2	120.68	105.02			0.50149	0.4418	259.96	24	23	Median	0.60112	0.51477	172.41	7	7	Median	0.16794	0.20154	259.05	4	4	Median	0.16517	0.16437	308.43	7	7	Median	1.516	1.6097	330.94	6	5	Median	7738100000	3930800000	3807300000	1218700000	503500000	715170000	1648600000	989590000	658970000	2913800000	1604900000	1308800000	1957100000	832760000	1124300000	21962	1415	20791	135807;135808;135809;135810;135811;135812;135813;135814;135815;135816;135817;135818;135819;135820;135821;135822;135823;135824;135825;135826;135827;135828;135829;135830;135831;135832;135833;135834;135835;135836;135837;135838;135839;135840;135841	184633;184634;184635;184636;184637;184638;184639;184640;184641;184642;184643;184644;184645;184646;184647;184648;184649;184650;184651;184652;184653;184654;184655;184656;184657;184658;184659;184660;184661;184662;184663;184664;184665;184666;184667;184668	184650			36	
HADIVTTTTHKTLR	1	Acetyl (K)	1634.874	0.87401821	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	41.83	32.628	3	6.7419E-06	17917	160513_QHF_FH_JSI11Kac_6	146.59	131.55			0.3913	0.45658	386.93	4	4	Median	NaN	NaN	NaN	0	0	Median	0.3913	0.46384	468.07	2	2	Median	0.42215	0.4145	479.51	2	2	Median	NaN	NaN	NaN	0	0	Median	91736000	55417000	36319000	0	0	0	25878000	8011600	17866000	54854000	39665000	15189000	11004000	7740900	3263500	21963	1415	20792	135842;135843;135844;135845;135846;135847	184669;184670;184671;184672;184673;184674	184670	1373		6	
HADSILEK	1	Unmodified	911.47125	0.47124585	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	14.619	13.98	2	0.0013379	11063	160511_QHF_FH_JSI11i_2	106.36	72.806			0.15555	0.17615	141.2	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.15524	0.19035	NaN	1	1	Median	0.24417	0.2531	NaN	1	1	Median	1.4417	1.5945	141.72	2	2	Median	121870000	74091000	47782000	0	0	0	31481000	24930000	6550900	35849000	23149000	12700000	54543000	26011000	28531000	21964	2549	20793	135848;135849;135850;135851	184675;184676;184677;184678	184677			4	
HADYIASYGSK	1	Unmodified	1210.5619	0.56185177	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59		6	1						1	3	1	3	1	23.523	21.541	2;3	1.3034E-06	18716	160511_QHF_FH_JSI10i_2	119.16	102.68			1.0732	0.94103	159.14	7	7	Median	2.4142	2.1079	114.05	2	2	Median	1.4217	1.7573	NaN	1	1	Median	4.1766	4.2197	235.61	3	3	Plateau	0.31056	0.33532	NaN	1	1	Median	653630000	267610000	386020000	144600000	53720000	90883000	165440000	77185000	88254000	260680000	83661000	177020000	82902000	53039000	29863000	21965	1803	20794	135852;135853;135854;135855;135856;135857;135858;135859	184679;184680;184681;184682;184683;184684;184685;184686;184687	184687			9	
HAEATLGSGNLR	0	Unmodified	1224.6211	0.62109799	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	17.126	16.368	2	0.00042948	13074	160511_QHF_FH_JSI11i_2	148.56	126.43			2.9861	3.2724	133.47	5	5	Median	2.7425	2.3646	NaN	1	1	Median	3.0072	3.6274	NaN	1	1	Median	12.33	12.062	NaN	1	1	Median	0.91721	0.9979	167.96	2	2	Median	196050000	54857000	141190000	19773000	4113800	15659000	55965000	7479300	48486000	49538000	4505900	45033000	70771000	38758000	32013000	21966	4788	20795	135860;135861;135862;135863;135864	184688;184689;184690;184691;184692	184691			5	
HAEELAAQK	1	Unmodified	995.50361	0.50360861	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	8.0088	7.3844	2	0.0080403	5233	160511_QHF_FH_JSI12i_2	61.582	39.09			1.2811	1.4407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2811	1.4407	NaN	1	1	Median	77288000	49852000	27437000	0	0	0	0	0	0	0	0	0	77288000	49852000	27437000	21967	428	20796	135865;135866	184693;184694	184694			2	
HAEELER	0	Unmodified	882.41954	0.41954463	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	5.9724	5.6214	2	0.004659	3718	160511_QHF_FH_JSI10i_2	124.83	89.729			0.13238	0.14416	241.95	4	4	Median	NaN	NaN	NaN	0	0	Median	0.13505	0.16372	NaN	1	1	Median	1.4009	1.4011	339.59	2	2	Median	0.084881	0.094023	NaN	1	1	Median	551630000	346360000	205270000	0	0	0	116020000	101120000	14899000	309790000	133150000	176640000	125830000	112090000	13738000	21968	5295	20797	135867;135868;135869;135870	184695;184696;184697;184698	184698			4	
HAEMVHTGLK	1	Unmodified	1121.5652	0.56516301	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.88	5.86		3	3						2	1		4	3	17.77	14.99	2;3	0.00055606	11145	160511_QHF_FH_JSI11i_3	66.603	42.573			0.46291	0.48515	94.758	6	3	Median	1.2722	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.22349	0.21299	120.03	2	1	Median	0.6917	0.77795	68.141	3	2	Plateau	274460000	178520000	95938000	4224000	1739000	2485100	0	0	0	80696000	71357000	9339000	189540000	105430000	84114000	21969	2169	20798	135871;135872;135873;135874;135875;135876;135877;135878	184699;184700;184701;184702;184703;184704;184705;184706	184701			7	
HAEMVHTGLKLER	1	Acetyl (K)	1561.8035	0.8034958	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	45.398	36.137	3	0.00023636	18861	160513_QHF_FH_JSI12Kac_6	86.699	72.983			1.61	1.3832	279.46	7	5	Median	1.61	1.3832	NaN	1	0	Median	0.21572	0.25472	347.44	2	1	Median	0.4728	0.45629	461.39	2	2	Median	0.55757	0.61212	338.48	2	2	Median	86249000	51362000	34887000	8903800	3758600	5145200	35868000	22226000	13642000	27985000	19113000	8871700	13493000	6265200	7228100	21970	2169	20799	135879;135880;135881;135882;135883;135884;135885	184707;184708;184709;184710;184711;184712;184713	184711	2287		7	
HAEPEQNWEAVDGSQTETEK	1	Unmodified	2283.988	0.98799793	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		34.686	34.34	3	0.00015717	30667	160511_QHF_FH_JSI10i_1	61.087	53.283			2.1701	2.4686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1701	2.4686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24280000	5154700	19125000	0	0	0	24280000	5154700	19125000	0	0	0	0	0	0	21971	1005	20800	135886;135887	184714;184715	184715			2	
HAESVGDGER	0	Unmodified	1055.4632	0.46320036	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	3	2	3	5.007	4.6481	2	8.0429E-07	2578	160511_QHF_FH_JSI10i_2	123.21	93.832			0.75793	0.87082	78.299	9	4	Median	2.3173	2.0404	NaN	1	0	Median	0.7311	0.87082	86.605	3	2	Median	0.87419	0.86713	18.256	2	0	Median	0.68075	0.70646	119.02	3	2	Median	995850000	501620000	494240000	128090000	46545000	81547000	250730000	145720000	105000000	319670000	168520000	151150000	297360000	140830000	156530000	21972	1357	20801	135888;135889;135890;135891;135892;135893;135894;135895;135896	184716;184717;184718;184719;184720;184721	184721			6	
HAFEIFR	0	Unmodified	918.47119	0.47118627	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.875	40.665	2	0.014965	34742	160511_QHF_FH_JSI12i_3	64.757	44.203			0.20703	0.21529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20703	0.21529	NaN	1	1	Median	40605000	30513000	10092000	0	0	0	0	0	0	0	0	0	40605000	30513000	10092000	21973	2455	20802	135897	184722	184722			1	
HAFEIIHLLTGENPLQVLVNAIINSGPR	0	Unmodified	3064.6822	0.68218869	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	1.94				7					31	9	10	10	9	106.25	97.379	3;4	1.0822E-116	55342	160513_QHF_FH_JSI11Kac_6	240.46	224.01			1.3729	1.4716	64.982	31	17	Median	0.64056	0.54494	27.774	7	5	Median	0.54536	0.64303	89.314	7	4	Median	2.0065	1.9165	14.743	9	4	Median	1.6769	1.7509	20.986	8	4	Median	3590600000	1504400000	2086200000	766750000	547330000	219420000	2158600000	733410000	1425200000	338370000	102950000	235420000	326880000	120700000	206180000	21974	1594	20803	135898;135899;135900;135901;135902;135903;135904;135905;135906;135907;135908;135909;135910;135911;135912;135913;135914;135915;135916;135917;135918;135919;135920;135921;135922;135923;135924;135925;135926;135927;135928;135929;135930;135931;135932;135933;135934;135935	184723;184724;184725;184726;184727;184728;184729;184730;184731;184732;184733;184734;184735;184736;184737;184738;184739;184740;184741;184742;184743;184744;184745;184746;184747;184748;184749;184750;184751;184752;184753;184754;184755;184756;184757;184758;184759;184760;184761	184723			38	
HAFSGGR	0	Unmodified	730.35107	0.35107114	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			2.9517	2.4918	2	0.0055543	1309	160511_QHF_FH_JSI10i_3	99.384	75.197			2.2076	1.7932	204.02	4	4	Median	2.2076	1.7932	174.83	2	2	Median	1.2353	1.4399	306.31	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	210170000	90296000	119870000	106970000	35100000	71869000	103200000	55195000	48002000	0	0	0	0	0	0	21975	1226	20804	135936;135937;135938;135939	184762;184763;184764;184765;184766	184762			5	
HAGTEVELEK	1	Unmodified	1111.551	0.55095274	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	14.997	14.76	2	0.00094437	12020	160511_QHF_FH_JSI12i_2	73.985	48.426			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13823000	13823000	0	0	0	0	0	0	0	13823000	13823000	0	0	0	0	21976	3285	20805	135940;135941	184767;184768	184767			2	
HAIPIIK	1	Unmodified	790.50651	0.50650915	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.79		7	3						3	2	2	5	4	29.466	26.87	2	0.0075574	22418	160511_QHF_FH_JSI11i_3	88.627	56.513			7.3242	8.0029	244.43	12	12	Median	55.574	47.641	118.48	2	2	Median	5.1806	6.3679	354.87	2	2	Median	11.468	10.703	240.45	4	4	Median	2.3267	2.4237	236.79	4	4	Median	2443500000	923390000	1520100000	197100000	2679000	194420000	575950000	241420000	334530000	1121000000	377010000	743960000	549470000	302280000	247200000	21977	154	20806	135942;135943;135944;135945;135946;135947;135948;135949;135950;135951;135952;135953;135954	184769;184770;184771;184772;184773;184774;184775;184776;184777;184778;184779;184780;184781	184769			13	
HAIPIIKEK	2	Acetyl (K)	1089.6546	0.65462995	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		45.18	35.522	2	0.046815	19340	160513_QHF_FH_JSI11Kac_6	51.346	43.778			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2160800	2160800	0	0	0	0	0	0	0	2160800	2160800	0	0	0	0	21978	154	20807	135955	184782	184782			1	
HAIPNLVK	1	Unmodified	890.53379	0.53378653	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	2	1	1	4	27.106	26.345	2	0.0019528	22569	160511_QHF_FH_JSI12i_2	94.407	61.05			0.17031	0.19417	177.57	5	5	Median	0.12562	0.10829	NaN	1	1	Median	0.079569	0.096801	NaN	1	1	Median	4.1626	3.828	NaN	1	1	Median	0.64486	0.69598	180.54	2	2	Median	276280000	143380000	132900000	44976000	40102000	4874300	65638000	60646000	4991800	40936000	4100000	36836000	124730000	38532000	86197000	21979	442	20808	135956;135957;135958;135959;135960;135961;135962;135963	184783;184784;184785;184786;184787;184788;184789;184790	184785			8	
HAIPSAER	0	Unmodified	879.45626	0.45626449	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		7.8035	7.4793	2	0.020831	5140	160511_QHF_FH_JSI11i_2	56.122	31.49			0.46918	0.51856	80.634	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74513	0.9171	NaN	1	1	Median	0.29542	0.29321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88826000	57968000	30858000	0	0	0	46159000	26954000	19205000	42666000	31014000	11653000	0	0	0	21980	3859	20809	135964;135965	184791;184792	184791			2	
HAIQWLYPYSILLGHEGK	1	Unmodified	2124.1156	0.11564547	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	86.356	78.449	3	0.00018407	44645	160513_QHF_FH_JSI10Kac_6	87.411	78.248			1.2343	1.303	84.927	3	3	Median	2.549	2.2226	NaN	1	1	Median	0.35409	0.42117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2343	1.303	NaN	1	1	Median	226920000	111010000	115900000	76259000	17408000	58851000	72707000	62712000	9994900	0	0	0	77950000	30895000	47055000	21981	15	20810	135966;135967;135968	184793;184794;184795	184795			3	
HAIVICNR	0	Unmodified	981.51782	0.51781889	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	1	2		1	15.519	13.374	2	0.00090562	10716	160511_QHF_FH_JSI9i_3	117.7	80.053			1.1582	1.1414	89.083	4	4	Median	1.1419	0.9317	NaN	1	1	Median	0.54579	0.65259	107.77	2	2	Median	NaN	NaN	NaN	0	0	Median	2.4222	2.5142	NaN	1	1	Median	178060000	48870000	129190000	37828000	11938000	25890000	99526000	27219000	72306000	0	0	0	40703000	9712300	30991000	21982	1805	20811	135969;135970;135971;135972	184796;184797;184798;184799	184797			4	
HALDAHQQSIPAVLEIPSK	1	Unmodified	2053.0956	0.095638305	2774	Q16864	ATP6V1F	V-type proton ATPase subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		64.364	63.65	3	0.00089122	55968	160511_QHF_FH_JSI9i_2	50.957	35.999			0.82487	0.81179	33.715	4	4	Median	1.2533	1.032	NaN	1	1	Median	0.46999	0.57776	NaN	1	1	Median	0.82487	0.84996	40.442	2	2	Median	NaN	NaN	NaN	0	0	Median	132520000	77893000	54631000	25862000	9730100	16131000	34337000	26582000	7755000	72326000	41581000	30745000	0	0	0	21983	2774	20812	135973;135974;135975;135976	184800;184801;184802;184803;184804	184800			5	
HALIIYDDLSK	1	Unmodified	1286.6871	0.68705229	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.49		17	2					17	14	15	13	11	11	61.625	54.846	2;3	1.7215E-18	28477	160513_QHF_FH_JSI12Kac_6	174.73	164.78			4.1217	4.4251	241.55	47	42	Median	1.9674	1.6505	222.17	14	11	Median	3.7914	4.4251	243.52	11	10	Median	4.1217	3.8995	271.17	11	11	Median	6.4041	7.0062	266.5	11	10	Median	9508500000	4765700000	4742800000	2313800000	1166100000	1147700000	2545300000	1300700000	1244500000	2717700000	1420400000	1297200000	1931800000	878510000	1053300000	21984	1263	20813	135977;135978;135979;135980;135981;135982;135983;135984;135985;135986;135987;135988;135989;135990;135991;135992;135993;135994;135995;135996;135997;135998;135999;136000;136001;136002;136003;136004;136005;136006;136007;136008;136009;136010;136011;136012;136013;136014;136015;136016;136017;136018;136019;136020;136021;136022;136023;136024;136025;136026	184805;184806;184807;184808;184809;184810;184811;184812;184813;184814;184815;184816;184817;184818;184819;184820;184821;184822;184823;184824;184825;184826;184827;184828;184829;184830;184831;184832;184833;184834;184835;184836;184837;184838;184839;184840;184841;184842;184843;184844;184845;184846;184847;184848;184849;184850;184851;184852;184853;184854;184855;184856;184857;184858;184859;184860;184861;184862	184858			56	
HALLDVTPNAVDR	0	Unmodified	1419.747	0.74702678	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	49.368	48.408	2	0.00032692	41668	160511_QHF_FH_JSI11i_2	98.249	87.725			0.4935	0.51102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4935	0.51102	NaN	1	1	Median	18423000	17376000	1046600	0	0	0	0	0	0	12525000	12525000	0	5898200	4851500	1046600	21985	2253	20814	136027;136028	184863;184864	184864			2	
HALLEGR	0	Unmodified	794.43989	0.43988615	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	11.688	10.952	2	0.02427	8507	160511_QHF_FH_JSI12i_2	49.058	25.749			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21986	1357	20815	136029	184865	184865			1	
HALPPGFVLK	1	Unmodified	1077.6335	0.63350057	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	2	1	49.331	48.403	2	6.8179E-05	42529	160511_QHF_FH_JSI11i_3	89.55	70.456			0.6617	0.64448	51.14	7	4	Median	0.73834	0.62426	15.77	2	1	Median	1.4144	1.662	27.884	2	2	Median	0.60119	0.57166	5.0553	2	1	Median	0.62175	0.64448	NaN	1	0	Median	298200000	180320000	117880000	20983000	9167700	11816000	60533000	33643000	26890000	177120000	116210000	60905000	39569000	21296000	18272000	21987	3754	20816	136030;136031;136032;136033;136034;136035;136036	184866;184867;184868;184869;184870;184871;184872;184873	184866			8	
HALTVSYFYDATR	0	Unmodified	1542.7467	0.74669243	4981	Q9NSC5	HOMER3	Homer protein homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	67.684	58.641	2;3	1.0275E-08	32213	160513_QHF_FH_JSI10Kac_6	149.23	130.92			0.86298	0.71233	52.635	7	5	Median	0.73481	0.62015	19.599	2	1	Median	0.62551	0.74119	77.453	2	1	Median	1.6471	1.573	NaN	1	1	Median	0.67813	0.73726	64.44	2	2	Median	188560000	107350000	81212000	53537000	27972000	25564000	83849000	51657000	32192000	22736000	8990800	13745000	28440000	18730000	9710800	21988	4981	20817	136037;136038;136039;136040;136041;136042;136043;136044;136045	184874;184875;184876;184877;184878;184879;184880;184881;184882;184883	184883			10	
HANAKPFEVPFLK	2	Acetyl (K)	1538.8245	0.82454882	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		80.254	70.94	2;3	5.0028E-06	38963	160513_QHF_FH_JSI11Kac_6	118.48	104.02			0.09147	0.089489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.09147	0.089489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58619000	57224000	1395000	0	0	0	0	0	0	58619000	57224000	1395000	0	0	0	21989	5370	20818	136046;136047	184884;184885	184885	3372		2	
HANTLITAVHDSFVAVGK	1	Unmodified	1878.9952	0.99519598	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	70.953	70.364	3	0.00018673	60143	160511_QHF_FH_JSI12i_3	69.763	60.358			1.5885	1.6175	77.664	3	3	Median	0.56217	0.47376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1636	1.9951	NaN	1	1	Median	1.5885	1.6175	NaN	1	1	Median	73581000	27244000	46337000	10836000	7385700	3450500	0	0	0	21180000	6733500	14446000	41565000	13125000	28440000	21990	2977	20819	136048;136049;136050	184886;184887;184888	184888			3	
HAPGLIAALAYETANFYQK	1	Unmodified	2077.0633	0.063275544	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.12		1	2						7	2	3	2	3	94.217	88.39	3	1.2676E-14	83867	160511_QHF_FH_JSI10i_3	146.16	130.22			0.73871	0.72056	131.3	10	7	Median	0.35594	0.2977	115.16	2	1	Median	0.65729	0.77251	133.37	3	2	Median	0.82655	0.79532	221.92	2	2	Median	0.96046	1.0318	121.75	3	2	Median	878870000	488890000	389980000	208990000	147380000	61610000	420140000	215310000	204830000	93197000	53078000	40120000	156550000	73126000	83423000	21991	2992	20820	136051;136052;136053;136054;136055;136056;136057;136058;136059;136060	184889;184890;184891;184892;184893;184894;184895;184896;184897	184889			9	
HAPINSAQHLDNVDQTGPK	1	Unmodified	2040.9977	0.99771517	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.93	6.62		2	6						7	3	2	5	5	30.272	26.322	3;4	3.7376E-16	21693	160511_QHF_FH_JSI12i_3	151.95	131.56			0.34035	0.35326	111.98	8	8	Median	0.61215	0.5444	NaN	1	1	Median	1.0747	1.2547	180.69	2	2	Median	0.35945	0.35688	89.882	3	3	Median	0.19506	0.20284	75.545	2	2	Median	296060000	149700000	146360000	24990000	2465400	22524000	11484000	4893400	6590400	124240000	57332000	66905000	135350000	85009000	50339000	21992	305	20821	136061;136062;136063;136064;136065;136066;136067;136068;136069;136070;136071;136072;136073;136074;136075	184898;184899;184900;184901;184902;184903;184904;184905;184906;184907;184908;184909;184910;184911;184912;184913;184914	184907			17	
HAPLADQILAGNAVR	0	Unmodified	1544.8423	0.84232415	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	54.684	54.443	2	0.039825	46771	160511_QHF_FH_JSI12i_3	46.352	39.499			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6737200	0	6737200	0	0	0	0	0	0	0	0	0	6737200	0	6737200	21993	2479	20822	136076	184915	184915			1	
HAPVLELEGK	1	Unmodified	1091.5975	0.597509	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	35.499	34.558	2	0.0010829	29341	160511_QHF_FH_JSI12i_2	79.148	51.135			3.9304	4.304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9304	4.304	NaN	1	1	Median	133780000	105340000	28431000	17271000	17271000	0	31175000	31175000	0	51990000	51990000	0	33339000	4907800	28431000	21994	1491	20823	136077;136078;136079;136080	184916;184917;184918;184919	184916			4	
HAQPPPIPVQNDPELYEK	1	Unmodified	2071.0375	0.037454724	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	55.392	54.352	3	0.00011599	46527	160511_QHF_FH_JSI12i_2	78.078	69.434			0.77785	0.83206	104.72	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77785	0.83206	104.72	2	2	Median	56983000	29164000	27819000	0	0	0	10779000	10779000	0	11623000	0	11623000	34581000	18385000	16196000	21995	5459	20824	136081;136082;136083;136084	184920;184921;184922;184923;184924	184920			5	
HAQPTCPGAQLCTVYYASLNFR	0	Unmodified	2553.1893	0.18929747	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3		1	1	2	80.038	71.869	3	1.5579E-11	37627	160513_QHF_FH_JSI12Kac_6	101.71	93.519			1.0657	1.2727	5.1444	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0657	1.2715	NaN	1	0	Median	1.3957	1.3908	NaN	1	1	Median	1.2929	1.3892	NaN	1	0	Median	141500000	62691000	78809000	0	0	0	75081000	39401000	35680000	37472000	12845000	24627000	28947000	10445000	18502000	21996	1650	20825	136085;136086;136087;136088	184925;184926;184927;184928	184927			4	
HAQQELK	1	Unmodified	852.44537	0.44536545	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	4.3857	3.9946	2	0.0050493	2111	160511_QHF_FH_JSI10i_2	123.69	77.319			0.039567	0.03994	51.247	4	4	Median	0.034976	0.029708	NaN	1	1	Median	0.029767	0.035999	NaN	1	1	Median	0.044761	0.044312	NaN	1	1	Median	0.087416	0.095607	NaN	1	1	Median	541090000	512660000	28428000	159500000	155160000	4347800	143360000	137010000	6355200	47816000	44575000	3241100	190410000	175930000	14484000	21997	679	20826	136089;136090;136091;136092;136093	184929;184930;184931;184932;184933;184934	184934			6	
HAQSGTIMAVK	1	Unmodified	1141.5914	0.59137776	1587	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								2	1	1	16.578	16.095	2	2.0379E-05	13691	160511_QHF_FH_JSI10i_2	132.78	82.076			1.3412	1.3502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3412	1.3502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45276000	32209000	13066000	0	0	0	26619000	26619000	0	18656000	5590300	13066000	0	0	0	21998	1587	20827	136094;136095;136096;136097	184935;184936;184937;184938	184936			4	
HAQSGYLK	1	Unmodified	902.46102	0.46101552	187	O14662	STX16	Syntaxin-16	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	7.8714	7.2697	2	0.016966	5064	160511_QHF_FH_JSI12i_2	58.917	46.561			68.252	75.234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68.252	75.234	NaN	1	1	Median	12089000	227610	11861000	0	0	0	0	0	0	0	0	0	12089000	227610	11861000	21999	187	20828	136098	184939	184939			1	
HAQTFGAK	1	Unmodified	858.4348	0.43480077	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		6.0069	5.8114	2	0.012062	3658	160511_QHF_FH_JSI11i_2	62.464	45.537			0.23685	0.23874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23685	0.23874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63245000	52453000	10792000	0	0	0	0	0	0	63245000	52453000	10792000	0	0	0	22000	2677	20829	136099	184940	184940			1	
HAQTFGAKQPTHQGGPAQDR	1	Acetyl (K)	2173.0413	0.041311323	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	1	0	0	1		By MS/MS	By matching	By matching	16	0									3		1	1	1	26.565	18.147	3	0.00014411	10853	160513_QHF_FH_JSI10Kac_6	66.325	49.819			1.085	1.2938	55.717	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.085	1.2938	NaN	1	0	Median	0.45099	0.44538	NaN	1	0	Median	0.52496	0.57377	NaN	1	0	Median	16943000	9753100	7190100	0	0	0	8561800	3720000	4841800	3938400	2534600	1403800	4443000	3498500	944480	22001	2677	20830	136100;136101;136102	184941;184942	184942	2626		2	
HASHISKLPK	2	Acetyl (K)	1158.6509	0.65094155	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		26.94	17.808	3	0.053604	10752	160513_QHF_FH_JSI11Kac_6	32.329	22.376			0.18195	0.18181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18195	0.18181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2833400	2694500	138960	0	0	0	0	0	0	2833400	2694500	138960	0	0	0	22002	939	20831	136103	184943	184943			1	
HASLQNSQR	0	Unmodified	1039.5159	0.51590463	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			4.7427	4.3423	2	0.00024025	2360	160511_QHF_FH_JSI10i_2	108.98	82.375			0.17088	0.17363	14.551	2	2	Median	0.22861	0.19244	NaN	1	1	Median	0.12773	0.15665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169410000	136840000	32574000	75460000	54428000	21032000	93955000	82413000	11542000	0	0	0	0	0	0	22003	3736	20832	136104;136105	184944;184945	184945			2	
HASNMLGELR	0	Unmodified	1126.5553	0.55532661	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3								2	2	4	30.272	29.648	2;3	5.1926E-14	24275	160511_QHF_FH_JSI12i_3	158.79	113.71			0.69182	0.74838	118.71	8	6	Median	NaN	NaN	NaN	0	0	Median	0.58416	0.71771	198.79	2	2	Median	0.22718	0.22237	13.657	2	2	Median	1.2658	1.2833	81.405	4	2	Median	947410000	538330000	409090000	0	0	0	250380000	134870000	115520000	256220000	197030000	59190000	440810000	206430000	234380000	22004	4212	20833	136106;136107;136108;136109;136110;136111;136112;136113	184946;184947;184948;184949;184950;184951;184952;184953;184954	184953			9	
HASPEDIKK	2	Unmodified	1023.5349	0.53490874	491	O75190	DNAJB6	DnaJ homolog subfamily B member 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.4798	6.5775	3	0.029339	4152	160511_QHF_FH_JSI12i_3	32.523	21.724			0.16219	0.16856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16219	0.16856	NaN	1	1	Median	70162000	53021000	17141000	0	0	0	0	0	0	0	0	0	70162000	53021000	17141000	22005	491	20834	136114	184955	184955			1	
HASPILPITEFSDIPR	0	Unmodified	1791.9519	0.95193418	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	1	4	3	85.17	84.547	2;3	1.0913E-10	74469	160511_QHF_FH_JSI11i_2	142.45	129.66			0.7834	0.8579	38.934	7	1	Median	0.79973	0.67792	74.893	2	1	Median	0.777	0.9667	NaN	1	0	Median	1.1135	1.083	33.436	2	0	Median	0.75404	0.83291	4.1803	2	0	Median	1099500000	488510000	610990000	204500000	72972000	131530000	214300000	107050000	107240000	400880000	174930000	225950000	279820000	133560000	146260000	22006	1527	20835	136115;136116;136117;136118;136119;136120;136121;136122;136123;136124	184956;184957;184958;184959;184960;184961;184962;184963;184964;184965;184966;184967;184968;184969;184970;184971;184972;184973;184974;184975	184970			20	
HASSGSFLPSANEHLK	1	Unmodified	1680.822	0.82198264	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	3	1	2	3	35.964	33.953	2;3	6.8029E-08	27677	160511_QHF_FH_JSI12i_3	107.11	90.678			1.4323	1.2862	95.322	7	6	Median	0.91022	0.77151	55.039	3	3	Plateau	10.017	11.31	NaN	1	1	Median	1.9119	1.804	NaN	1	1	Median	1.1955	1.2629	2.5769	2	1	Median	920500000	444070000	476430000	218430000	136160000	82273000	19937000	2378500	17558000	228170000	101050000	127120000	453960000	204490000	249470000	22007	595	20836	136125;136126;136127;136128;136129;136130;136131;136132;136133	184976;184977;184978;184979;184980;184981;184982;184983;184984;184985;184986	184984			11	
HASSSPESPK	1	Unmodified	1025.4778	0.47778779	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.25	5.63		3						1			1	2	1	4.7358	2.0596	2	0.00078152	2212	160511_QHF_FH_JSI11i_2	69.812	17.096			0.83839	0.95865	16.386	4	0	Median	NaN	NaN	NaN	0	0	Median	0.74857	0.91478	NaN	1	0	Median	0.84774	0.85658	22.545	2	0	Median	0.93898	1.0579	NaN	1	0	Median	194770000	108640000	86130000	0	0	0	51485000	27960000	23525000	94131000	54144000	39987000	49155000	26537000	22618000	22008	5474	20837	136134;136135;136136;136137	184987;184988;184989	184988			2	
HASTSLVQK	1	Unmodified	969.52434	0.52434406	5821				yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			6.1289	5.6663	2;3	0.016793	3685	160511_QHF_FH_JSI10i_3	39.022	14.867	+		0.31414	0.37528	42.73	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31414	0.37528	42.73	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154930000	122970000	31957000	0	0	0	154930000	122970000	31957000	0	0	0	0	0	0	22009	5821	20838	136138;136139	184990;184991	184990			2	
HATIYPTEEELQAVQK	1	Unmodified	1855.9316	0.93159267	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	52.576	51.184	2;3	1.2939E-09	44081	160511_QHF_FH_JSI11i_2	102.05	85.926			1.0538	1.2006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.2006	NaN	1	1	Median	74328000	42520000	31808000	0	0	0	0	0	0	0	0	0	74328000	42520000	31808000	22010	4161	20839	136140;136141;136142	184992;184993;184994	184994			3	
HAVDGAVK	1	Unmodified	795.4239	0.42390173	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.46		5						4		2	3	2	2	5.5293	1.113	2	0.0017591	2821	160511_QHF_FH_JSI12i_2	85.212	54.708			0.69765	0.80471	148.25	9	6	Median	1.4536	1.1996	115.03	2	2	Median	0.69765	0.80471	249.48	3	2	Median	1.9463	1.9606	89.167	2	1	Median	0.39119	0.42427	74.988	2	1	Median	1603700000	596410000	1007300000	207010000	34700000	172310000	410730000	203360000	207370000	423630000	50101000	373520000	562380000	308250000	254130000	22011	3860	20840	136143;136144;136145;136146;136147;136148;136149;136150;136151	184995;184996;184997;184998;184999;185000;185001;185002;185003	184995			9	
HAVLMNFLFTMLR	0	2 Oxidation (M)	1623.8265	0.82653943	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	2	1	1	81.839	73.972	2;3	3.0913E-18	41468	160513_QHF_FH_JSI10Kac_6	146.71	130.13			0.83078	0.90341	22.429	6	1	Median	1.1268	0.94987	8.3445	2	1	Median	0.83078	0.97123	8.9834	2	0	Median	0.57188	0.55936	NaN	1	0	Median	0.76178	0.81934	NaN	1	0	Median	658810000	338020000	320800000	294360000	126880000	167470000	211100000	116280000	94818000	89848000	55812000	34036000	63516000	39042000	24473000	22012	5708	20841	136152;136153;136154;136155;136156;136157;136158	185004;185005;185006;185007;185008;185009;185010;185011	185010		2736;2737	8	
HAVLMNFLFTMLR	0	Oxidation (M)	1607.8316	0.83162481	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									27	7	7	7	6	89.985	81.77	2;3	1.5019E-13	46763	160513_QHF_FH_JSI10Kac_6	171.92	128.64			0.86941	0.98777	164.06	26	25	Median	0.36614	0.31708	165.43	7	7	Median	1.2603	1.5161	164.28	7	6	Median	0.33899	0.32289	187.32	7	7	Median	2.996	3.1613	161.14	5	5	Median	3711500000	2021200000	1690200000	1088200000	519270000	568920000	1469900000	859320000	610550000	772580000	465130000	307450000	380810000	177500000	203320000	22013	5708	20841	136159;136160;136161;136162;136163;136164;136165;136166;136167;136168;136169;136170;136171;136172;136173;136174;136175;136176;136177;136178;136179;136180;136181;136182;136183;136184;136185	185012;185013;185014;185015;185016;185017;185018;185019;185020;185021;185022;185023;185024;185025;185026;185027;185028;185029;185030;185031;185032;185033;185034;185035;185036;185037;185038	185036		2736;2737	27	
HAVLMNFLFTMLR	0	Unmodified	1591.8367	0.83671019	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									16	4	4	4	4	97.012	88.593	2;3	5.36E-60	50055	160513_QHF_FH_JSI11Kac_6	254.53	205.53			0.19419	0.20599	215.05	15	15	Median	0.8497	0.72564	283.79	4	4	Median	0.11251	0.13345	339.03	3	3	Median	0.63574	0.60426	190.79	4	4	Median	0.58222	0.61657	140.64	4	4	Median	11015000000	5596200000	5418700000	2556400000	947450000	1609000000	3989000000	2024200000	1964800000	2907800000	1726800000	1181000000	1561600000	897780000	663860000	22014	5708	20841	136186;136187;136188;136189;136190;136191;136192;136193;136194;136195;136196;136197;136198;136199;136200;136201	185039;185040;185041;185042;185043;185044;185045;185046;185047;185048;185049;185050;185051;185052;185053;185054	185040			16	
HAVLMNFLFTMLREEGGFEYK	1	Unmodified	2531.2341	0.2341224	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			97.606	90.193	3	3.1702E-08	53367	160513_QHF_FH_JSI10Kac_6	142.98	126.05			0.92014	0.7762	100.75	4	4	Median	0.92014	0.7762	66.443	2	2	Median	0.54481	0.65246	160.42	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1395400000	842440000	552960000	281770000	131370000	150400000	1113600000	711070000	402560000	0	0	0	0	0	0	22015	5708	20842	136202;136203;136204;136205	185055;185056;185057;185058	185058			4	
HAVVVGR	0	Unmodified	736.43441	0.43440684	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	5	3	2	7.6704	4.625	2	3.3462E-06	4766	160511_QHF_FH_JSI10i_3	157.88	101.62			0.47391	0.42049	108.62	13	12	Median	0.47391	0.40641	74.243	3	2	Median	0.36238	0.42049	163.53	5	5	Median	0.2933	0.27589	54.799	3	3	Median	0.95472	1.0027	56.439	2	2	Median	3755300000	2395400000	1359900000	826460000	443690000	382770000	1028800000	733570000	295190000	1157000000	841200000	315800000	743080000	376970000	366110000	22016	1004	20843	136206;136207;136208;136209;136210;136211;136212;136213;136214;136215;136216;136217;136218	185059;185060;185061;185062;185063;185064;185065;185066;185067;185068;185069;185070;185071	185061			13	
HAWQLTQGATVLGLFR	0	Unmodified	1796.9686	0.9685873	1521	P41273	TNFSF9	Tumor necrosis factor ligand superfamily member 9	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			85.721	80.02	2;3	2.0054E-22	44880	160513_QHF_FH_JSI10Kac_6	194.12	172.08			0.27426	0.32211	61.688	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.27426	0.32211	61.688	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	281320000	197530000	83786000	0	0	0	281320000	197530000	83786000	0	0	0	0	0	0	22017	1521	20844	136219;136220;136221	185072;185073;185074	185074			3	
HAYDLIQK	1	Unmodified	986.51853	0.5185304	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14	0							2				1		1	56.676	46.051	2	0.043724	25519	160513_QHF_FH_JSI10Kac_4	54.525	0			0.0057168	0.0059839	13.878	2	2	Median	NaN	NaN	NaN	0	0	Median	0.0061995	0.0066009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.0052717	0.0054246	NaN	1	1	Median	1021900000	1016200000	5682700	0	0	0	526000000	523260000	2742800	0	0	0	495890000	492950000	2939900	22018	2280	20845	136222;136223	185075;185076	185075			2	
HAYGDQYR	0	Unmodified	1008.4413	0.44134271	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	8.8548	8.4045	2	0.0076682	6187	160511_QHF_FH_JSI9i_2	58.815	53.156			1.0372	1.1078	21.65	4	0	Median	1.7787	1.545	NaN	1	0	Median	0.77226	0.95162	NaN	1	0	Median	1.0098	1.0159	NaN	1	0	Median	1.0655	1.2081	NaN	1	0	Median	302160000	144300000	157860000	45483000	14806000	30677000	86736000	45453000	41283000	118080000	54360000	63717000	51867000	29684000	22183000	22019	576	20846	136224;136225;136226;136227	185077	185077			1	
HAYYVTVEAAPYWLHK	1	Unmodified	1946.9679	0.9679186	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	74.636	66.098	2;3;4	5.3061E-32	36506	160513_QHF_FH_JSI10Kac_6	216.06	192.38			1.4933	1.6072	68.661	8	7	Median	2.6606	2.307	100.65	2	1	Median	0.77487	0.93176	85.296	2	2	Median	2.3863	2.2626	56.56	2	2	Median	1.3621	1.4471	35.957	2	2	Median	1467600000	614850000	852730000	297030000	109190000	187840000	405260000	259450000	145810000	480630000	145930000	334700000	284670000	100280000	184380000	22020	1388	20847	136228;136229;136230;136231;136232;136233;136234;136235;136236	185078;185079;185080;185081;185082;185083;185084;185085;185086;185087	185087			10	
HCDLQVR	0	Unmodified	926.43923	0.43923422	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		9.7726	9.4237	2	0.013756	7237	160511_QHF_FH_JSI10i_2	69.176	23.294			0.71369	0.80292	158.35	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9945	2.4601	NaN	1	1	Median	0.25538	0.26206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	158540000	99460000	59084000	0	0	0	61628000	28790000	32838000	96916000	70670000	26245000	0	0	0	22021	2502	20848	136237;136238	185088;185089	185089			2	
HCDNLLR	0	Unmodified	926.43923	0.43923422	2857	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			9.9654	9.466	2	0.020944	7440	160511_QHF_FH_JSI10i_2	60.358	9.0228			0.43974	0.53755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43974	0.53755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54318000	34961000	19357000	0	0	0	54318000	34961000	19357000	0	0	0	0	0	0	22022	2857	20849	136239	185090	185090			1	
HCGNIPVFVINYPLTLK	1	Unmodified	1984.0604	0.060438772	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		88.052	78.722	3	0.00054546	43912	160513_QHF_FH_JSI11Kac_6	74.12	58.865			0.21379	0.20161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21379	0.20161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28683000	23245000	5437400	0	0	0	0	0	0	28683000	23245000	5437400	0	0	0	22023	4121	20850	136240	185091	185091			1	
HCIMQANAEYHQSILAK	1	Unmodified	2012.9561	0.95605006	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	40.132	40.034	3	1.4554E-16	35183	160511_QHF_FH_JSI11i_3	195.38	173.17			0.74717	0.7273	53.163	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68726	0.64207	41.868	2	2	Median	0.97095	0.99875	69.095	2	2	Median	378350000	209280000	169060000	0	0	0	0	0	0	152860000	87407000	65448000	225490000	121880000	103620000	22024	3766	20851	136241;136242;136243;136244	185092;185093;185094;185095;185096;185097	185094			6	
HCIVLLQIAK	1	Unmodified	1193.6954	0.6954489	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	67.597	57.754	2	0.057415	30211	160513_QHF_FH_JSI12Kac_6	47.657	39.437			2.5767	2.7761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5767	2.7761	NaN	1	1	Median	6156100	1116400	5039700	0	0	0	0	0	0	0	0	0	6156100	1116400	5039700	22025	4248	20852	136245	185098	185098			1	
HCLGVFFPVFAYASR	0	Unmodified	1769.8712	0.87118144	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	3	2	1	89.137	81.428	2;3	0.00015085	44777	160513_QHF_FH_JSI9Kac_6	85.837	75.05			2.1961	2.3838	106.82	7	7	Median	3.3854	2.9571	NaN	1	1	Median	2.0176	2.3838	64.249	3	3	Median	0.97402	0.94788	221.97	2	2	Median	2.1961	2.3121	NaN	1	1	Median	562850000	254320000	308540000	65931000	20355000	45577000	296170000	144380000	151780000	127060000	57265000	69794000	73698000	32314000	41384000	22026	4337	20853	136246;136247;136248;136249;136250;136251;136252	185099;185100;185101;185102;185103;185104;185105	185101			7	
HCLQTVWNKPTVK	2	Unmodified	1609.8399	0.83988131	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.127	33.127	3	0.0515	28718	160511_QHF_FH_JSI11i_3	31.827	20.722			1.8586	1.6835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8586	1.6835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33301000	8446000	24855000	0	0	0	0	0	0	33301000	8446000	24855000	0	0	0	22027	873	20854	136253	185106	185106			1	
HCLSAANVIFGQTGK	1	Unmodified	1601.7984	0.79841043	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	53.713	53.654	2;3	0.00018972	47596	160511_QHF_FH_JSI11i_3	82.925	78.621			0.25345	0.23983	177.61	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25345	0.23983	177.61	3	3	Median	NaN	NaN	NaN	0	0	Median	144230000	79300000	64928000	0	0	0	0	0	0	134180000	79300000	54877000	10051000	0	10051000	22028	4047	20855	136254;136255;136256;136257;136258	185107;185108;185109;185110;185111	185109			5	
HCNMVLENVK	1	Unmodified	1242.5849	0.58491218	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		26.983	26.286	2	1.6469E-05	21717	160511_QHF_FH_JSI11i_2	150.61	122.43			1.4198	1.296	218.52	2	1	Median	0.33506	0.2764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6.0164	6.0764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	149500000	45161000	104330000	34908000	22402000	12506000	0	0	0	114590000	22760000	91828000	0	0	0	22029	2002	20856	136259;136260	185112;185113	185113			2	
HCNNGIPEDSK	1	Unmodified	1269.5408	0.54079876	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	8.2086	7.7979	2	0.0010576	5489	160511_QHF_FH_JSI11i_2	77.677	64.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30817000	18471000	12345000	0	0	0	0	0	0	18471000	18471000	0	12345000	0	12345000	22030	4260	20857	136261;136262;136263;136264	185114;185115;185116;185117	185116			4	
HCSQVDSVR	0	Unmodified	1086.4876	0.48764097	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									1	3	6.1305	5.8134	2	0.0002731	3541	160511_QHF_FH_JSI12i_3	96.143	73.072			0.96201	0.95543	78.057	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96201	0.95543	NaN	1	1	Median	0.64752	0.69569	107.31	2	2	Median	218230000	127470000	90758000	0	0	0	0	0	0	100600000	46788000	53816000	117630000	80684000	36942000	22031	2522	20858	136265;136266;136267;136268	185118;185119;185120;185121	185121			4	
HCTNAYMLVYIR	0	Unmodified	1539.7326	0.73263905	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									6		3	2	1	67.338	58.647	2;3	2.3542E-10	32040	160513_QHF_FH_JSI11Kac_6	127.42	114.85			1.704	2.035	48.406	5	5	Median	NaN	NaN	NaN	0	0	Median	0.89085	1.0616	44.45	3	3	Median	2.3754	2.1758	NaN	1	1	Median	2.4422	2.6256	NaN	1	1	Median	210460000	80560000	129900000	0	0	0	130470000	61899000	68569000	56777000	12474000	44303000	23212000	6186600	17026000	22032	3922	20859	136269;136270;136271;136272;136273;136274	185122;185123;185124;185125;185126;185127	185123			6	
HCTNAYMLVYIR	0	Oxidation (M)	1555.7276	0.72755367	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	58.265	48.387	3	0.00061936	25235	160513_QHF_FH_JSI12Kac_6	63.091	48.646			0.95943	1.0444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95943	1.0444	NaN	1	0	Median	9065700	3777600	5288100	0	0	0	0	0	0	0	0	0	9065700	3777600	5288100	22033	3922	20859	136275	185128	185128		2356	1	
HDADGQATLLNLLLR	0	Unmodified	1648.8897	0.88966827	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	2	4	99.468	99.42	3	1.1977E-05	85540	160511_QHF_FH_JSI12i_3	118.52	105.39			1.0085	1.0419	51.259	5	2	Median	NaN	NaN	NaN	0	0	Median	0.56951	0.68535	NaN	1	1	Median	1.8812	1.8069	NaN	1	0	Median	1.0085	1.0419	48.918	3	1	Median	67411000	36774000	30637000	0	0	0	7644500	6332500	1312000	7699300	3377800	4321500	52067000	27063000	25004000	22034	313	20860	136276;136277;136278;136279;136280;136281;136282	185129;185130;185131;185132;185133;185134;185135	185134			7	
HDDPALTLVAGLTSNKPTDK	2	Unmodified	2092.08	0.08004782	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	71.592	71.027	3	1.3362E-08	62983	160511_QHF_FH_JSI10i_2	107.65	86.421			0.9059	0.87652	22.397	6	4	Median	1.2556	1.0796	41.167	2	2	Median	0.76488	0.92555	NaN	1	0	Median	0.9059	0.88513	9.0781	2	1	Median	0.7931	0.79663	NaN	1	1	Median	307950000	158720000	149230000	57988000	20233000	37755000	49217000	29867000	19350000	94297000	50693000	43604000	106450000	57930000	48521000	22035	3111	20861	136283;136284;136285;136286;136287;136288	185136;185137;185138;185139;185140;185141;185142;185143	185141			8	
HDDYLVMLK	1	Unmodified	1132.5587	0.55868065	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		54.153	53.406	2	0.00055069	46095	160511_QHF_FH_JSI11i_2	88.819	47.39			1.3777	1.5231	19.748	4	4	Median	1.8584	1.612	NaN	1	1	Median	1.167	1.4392	NaN	1	1	Median	1.3088	1.3247	30.182	2	2	Median	NaN	NaN	NaN	0	0	Median	1408600000	594370000	814250000	270600000	82182000	188420000	350070000	149580000	200490000	787950000	362610000	425340000	0	0	0	22036	5486	20862	136289;136290;136291;136292	185144;185145;185146;185147	185146			4	
HDEEDYVEMK	1	Unmodified	1293.5183	0.51833198	4769	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.012	24.474	2	0.041211	21654	160511_QHF_FH_JSI12i_1	45.022	20.247			0.63865	0.66452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63865	0.66452	NaN	1	1	Median	19751000	14241000	5509800	0	0	0	0	0	0	0	0	0	19751000	14241000	5509800	22037	4769	20863	136293	185148	185148			1	
HDELTYF	0	Unmodified	923.4025	0.40249759	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	51.878	48.334	2	0.0030801	43894	160511_QHF_FH_JSI11i_1	106.84	89.91			0.99394	0.99512	11.8	11	0	Median	1.065	0.89011	1.3466	2	0	Median	0.90678	1.1925	8.6338	3	0	Plateau	1.0308	0.99512	8.4121	3	0	Plateau	0.84444	0.91508	11.739	3	0	Median	1534500000	719960000	814540000	292370000	112500000	179870000	377470000	196970000	180500000	482860000	230410000	252440000	381810000	180070000	201730000	22038	804	20864	136294;136295;136296;136297;136298;136299;136300;136301;136302;136303;136304	185149;185150;185151;185152;185153;185154;185155;185156;185157;185158;185159;185160;185161;185162;185163;185164;185165;185166;185167;185168;185169;185170;185171;185172;185173;185174	185150			26	
HDENLYGPIVK	1	Unmodified	1283.651	0.65100113	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	38.129	37.228	2	0.00046645	31821	160511_QHF_FH_JSI11i_2	86.624	75.473			1.6179	1.7296	30.027	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1238	2.1388	NaN	1	1	Median	1.2324	1.3988	NaN	1	1	Median	35132000	10025000	25107000	0	0	0	0	0	0	24648000	7198200	17450000	10484000	2827000	7656600	22039	3147	20865	136305;136306	185175;185176	185176			2	
HDFQDSVR	0	Unmodified	1002.4519	0.45190739	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.27	12.065	2	0.0034593	9434	160511_QHF_FH_JSI11i_2	78.192	49.043			1.8686	1.8689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8686	1.8689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45520000	12310000	33210000	0	0	0	0	0	0	45520000	12310000	33210000	0	0	0	22040	1873	20866	136307	185177	185177			1	
HDFSTVLTVFPILR	0	Unmodified	1643.9035	0.90352742	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									4	2		2		92.642	83.527	3	5.593E-05	46895	160513_QHF_FH_JSI9Kac_6	88.552	55.357			0.94248	0.86406	118.28	4	4	Median	0.73294	0.61284	152.66	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0451	1.0156	126.93	2	2	Median	NaN	NaN	NaN	0	0	Median	83229000	42734000	40496000	39786000	19529000	20257000	0	0	0	43444000	23205000	20239000	0	0	0	22041	5465	20867	136308;136309;136310;136311	185178;185179;185180;185181	185180			4	
HDGITVAVHK	1	Unmodified	1075.5774	0.57744226	341	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	22.926	15.559	3	0.0054437	8581	160513_QHF_FH_JSI12Kac_6	52.278	32.517			1.964	2.1852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.964	2.1852	NaN	1	1	Median	1459200	608660	850580	0	0	0	0	0	0	0	0	0	1459200	608660	850580	22042	341	20868	136312	185182	185182			1	
HDIAFVEFENDGQAGAAR	0	Unmodified	1945.8919	0.89185312	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	59.416	58.311	3	1.9589E-05	50140	160511_QHF_FH_JSI12i_2	78.441	71.839			0.67951	0.77445	38.822	2	1	Median	NaN	NaN	NaN	0	0	Median	0.48266	0.58854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95665	1.0191	NaN	1	0	Median	77476000	51710000	25766000	0	0	0	51313000	38241000	13072000	0	0	0	26163000	13469000	12694000	22043	906	20869	136313;136314	185183;185184	185183			2	
HDLGHFMLR	0	Unmodified	1124.5549	0.55493268	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	2	2	2	42.222	41.387	3	0.00019153	33753	160511_QHF_FH_JSI12i_3	63.397	58.49			1.0745	1.1437	34.427	8	1	Median	0.88725	0.72298	16.55	2	0	Median	0.97237	1.1437	12.554	2	0	Median	1.2956	1.2082	24.206	2	1	Median	1.5094	1.6399	20.584	2	0	Median	413740000	184990000	228760000	78982000	41030000	37952000	51951000	26610000	25341000	103330000	45679000	57653000	179480000	71669000	107810000	22044	1334	20870	136315;136316;136317;136318;136319;136320;136321;136322;136323	185185;185186;185187;185188;185189;185190;185191;185192	185190			7	
HDLNPLIK	1	Unmodified	948.53927	0.53926584	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	33.321	31.999	2	0.0071546	27097	160511_QHF_FH_JSI11i_2	58.815	30.597			0.33203	0.36555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33203	0.36555	NaN	1	1	Median	221500000	159920000	61580000	0	0	0	0	0	0	0	0	0	221500000	159920000	61580000	22045	1005	20871	136324;136325	185193;185194	185194			2	
HDLSTEGDSR	0	Unmodified	1115.4843	0.48432973	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	6.2435	5.6594	2	0.05472	3649	160511_QHF_FH_JSI12i_2	42.19	28.033			0.49219	0.54281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49219	0.54281	NaN	1	1	Median	12068000	7919600	4148000	0	0	0	0	0	0	0	0	0	12068000	7919600	4148000	22046	3405	20872	136326	185195	185195			1	
HDPNMKYELQLANPK	2	Acetyl (K)	1838.8985	0.8985184	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		68.584	57.697	3	0.0010174	31042	160513_QHF_FH_JSI11Kac_5	73.834	57.696			0.15569	0.15054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15569	0.15054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3417900	2879300	538520	0	0	0	0	0	0	3417900	2879300	538520	0	0	0	22047	3101	20873	136327	185196	185196	2769		1	
HDPNMKYELQLANPK	2	Acetyl (K);Oxidation (M)	1854.8934	0.89343302	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		57.973	47.107	3	0.0063135	25882	160513_QHF_FH_JSI11Kac_5	48.823	42.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22048	3101	20873	136328	185197	185197	2769	2194	1	
HDPQAEEALAK	1	Unmodified	1207.5833	0.5833155	3784	Q8WVM7	STAG1	Cohesin subunit SA-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		15.745	15.507	2	0.028164	12505	160511_QHF_FH_JSI11i_2	47.823	34.244			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12840000	12840000	0	0	0	0	0	0	0	12840000	12840000	0	0	0	0	22049	3784	20874	136329	185198	185198			1	
HDSATDTIDIAPNHR	0	Unmodified	1661.7758	0.77576073	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.689	24.664	3	2.0444E-15	20438	160511_QHF_FH_JSI12i_3	136.3	129.92			1.924	1.9794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.924	1.9794	NaN	1	0	Median	65005000	24719000	40287000	0	0	0	0	0	0	0	0	0	65005000	24719000	40287000	22050	1462	20875	136330	185199;185200	185199			2	
HDSFWNLVTILVLQGR	0	Unmodified	1897.021	0.021016799	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.508	89.374	3	0.037928	51396	160513_QHF_FH_JSI9Kac_6	31.7	10.467			2.3155	1.9652	NaN	1	1	Median	2.3155	1.9652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60843000	15679000	45165000	60843000	15679000	45165000	0	0	0	0	0	0	0	0	0	22051	4487	20876	136331	185201	185201			1	
HDSGAADLER	0	Unmodified	1069.4789	0.47885043	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	8.2592	7.7845	2	0.01085	5472	160511_QHF_FH_JSI12i_2	47.603	18.227			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14103000	14103000	0	0	0	0	14103000	14103000	0	0	0	0	0	0	0	22052	5093	20877	136332;136333	185202;185203	185202			2	
HDSPEDVK	1	Unmodified	925.41412	0.4141249	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.41	4	5					3			2	3	4	3	5.6606	3.3123	2	8.9383E-05	3064	160511_QHF_FH_JSI11i_1	131.06	112.33			0.83248	0.89127	62.792	12	2	Median	1.1176	0.93575	3.286	2	0	Median	0.74431	0.87565	20.446	3	0	Median	0.74505	0.72077	116.19	4	2	Median	0.62283	0.66799	27.156	3	0	Plateau	5356900000	2342900000	3014000000	908670000	390840000	517830000	1188500000	530400000	658120000	2000200000	766000000	1234200000	1259500000	655670000	603840000	22053	1386	20878	136334;136335;136336;136337;136338;136339;136340;136341;136342;136343;136344;136345	185204;185205;185206;185207;185208;185209;185210;185211;185212;185213;185214;185215;185216;185217;185218;185219;185220	185204			17	
HDSVFVAAHTSAGK	1	Unmodified	1425.7001	0.70007659	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS			By MS/MS	7.33	6.13			2						1	1			2	20.262	17.488	3	0.00029839	13749	160511_QHF_FH_JSI12i_3	77.42	64.007			1.7311	1.7714	112.8	3	3	Median	2.9238	2.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73062	0.73965	123.51	2	2	Median	122590000	62696000	59892000	2332600	347390	1985200	0	0	0	0	0	0	120260000	62348000	57907000	22054	2677	20879	136346;136347;136348	185221;185222;185223	185223			3	
HDTAAVDR	0	Unmodified	883.41479	0.41479361	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		1.8243	1.6371	2	0.011381	977	160511_QHF_FH_JSI11i_2	53.878	15.086			17.636	17.185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17.636	17.185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7968400	596120	7372300	0	0	0	0	0	0	7968400	596120	7372300	0	0	0	22055	4794	20880	136349;136350	185224;185225	185225			2	
HDVGAYMLMYK	1	Unmodified	1326.6101	0.6100643	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.32	6.96		11	1						13	5	5	8	7	60.773	55.362	2;3	3.2973E-20	30202	160513_QHF_FH_JSI10Kac_6	171.36	149.9			2.2209	2.3428	147.59	22	20	Median	3.089	2.6438	172.85	5	4	Median	0.91014	1.1116	193.04	5	4	Median	1.4572	1.5419	144.27	7	7	Median	2.7171	3.01	118.07	5	5	Median	2071500000	1022900000	1048600000	340990000	136460000	204530000	614370000	367510000	246870000	827850000	406830000	421020000	288330000	112110000	176220000	22056	2094	20881	136351;136352;136353;136354;136355;136356;136357;136358;136359;136360;136361;136362;136363;136364;136365;136366;136367;136368;136369;136370;136371;136372;136373;136374;136375	185226;185227;185228;185229;185230;185231;185232;185233;185234;185235;185236;185237;185238;185239;185240;185241;185242;185243;185244;185245;185246;185247;185248;185249;185250;185251;185252;185253;185254;185255;185256;185257;185258;185259;185260;185261	185257			36	
HDVGAYMLMYK	1	Oxidation (M)	1342.605	0.60497892	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	1	2		54.664	45.384	2;3	0.0048379	24640	160513_QHF_FH_JSI9Kac_6	54.471	37.529			1.4902	1.4643	104.08	5	5	Median	1.349	1.1431	56.38	2	2	Median	8.1914	9.3718	NaN	1	1	Median	1.0534	1.0184	51.352	2	2	Median	NaN	NaN	NaN	0	0	Median	51061000	20867000	30194000	28111000	11926000	16186000	5178700	527550	4651100	17771000	8413900	9357100	0	0	0	22057	2094	20881	136376;136377;136378;136379;136380	185262;185263;185264;185265;185266	185265		1765;1766	5	
HDVGAYMLMYKGANR	1	Acetyl (K)	1766.8232	0.82324497	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		70.762	62.25	3	0.0079801	33704	160513_QHF_FH_JSI11Kac_6	52.527	48.059			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25131000	25131000	0	0	0	0	9231500	9231500	0	15899000	15899000	0	0	0	0	22058	2094	20882	136381;136382	185267;185268	185267	2195		2	
HDVNLGR	0	Unmodified	809.4144	0.41439968	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.1709	7.9738	2	0.0057267	5582	160511_QHF_FH_JSI11i_2	97.602	43.892			0.28737	0.28707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28737	0.28707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	238290000	153480000	84817000	0	0	0	0	0	0	238290000	153480000	84817000	0	0	0	22059	3101	20883	136383	185269	185269			1	
HDVVFLITK	1	Unmodified	1070.6124	0.61243078	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.63		7	2					3	11	6	5	7	5	60.069	53.855	2;3	2.8341E-11	28397	160513_QHF_FH_JSI9Kac_6	156.92	100.91			1.9387	1.944	206.77	20	16	Median	4.7454	4.008	208.02	4	3	Median	1.0697	1.2808	211.63	5	4	Median	0.50302	0.5106	234.96	6	4	Median	4.2941	4.7679	219.59	5	5	Median	7612200000	3859900000	3752300000	1262400000	410810000	851540000	2265900000	1271700000	994200000	2565500000	1383200000	1182300000	1518400000	794260000	724180000	22060	2155	20884	136384;136385;136386;136387;136388;136389;136390;136391;136392;136393;136394;136395;136396;136397;136398;136399;136400;136401;136402;136403;136404;136405;136406	185270;185271;185272;185273;185274;185275;185276;185277;185278;185279;185280;185281;185282;185283;185284;185285;185286;185287;185288;185289;185290;185291;185292;185293;185294;185295;185296;185297;185298;185299;185300;185301;185302;185303;185304	185293			34	
HDYWLLAGIINHGYAR	0	Unmodified	1897.9588	0.95875089	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.704	77.111	3	8.6583E-17	42722	160513_QHF_FH_JSI10Kac_6	136.81	126.62			0.63641	0.73231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63641	0.73231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82521000	55288000	27233000	0	0	0	82521000	55288000	27233000	0	0	0	0	0	0	22061	2578	20885	136407	185305	185305			1	
HEALLYTWLAEHK	1	Unmodified	1609.8253	0.8252771	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	2		2	75.531	70.303	3	0.0001298	36453	160513_QHF_FH_JSI9Kac_6	87.498	74.085			1.2217	1.4664	82.504	5	5	Median	4.78	4.0028	NaN	1	1	Median	1.5908	1.8862	35.606	2	2	Median	NaN	NaN	NaN	0	0	Median	0.58815	0.62414	9.8227	2	2	Median	272780000	106620000	166160000	131050000	24504000	106550000	75065000	34679000	40386000	0	0	0	66660000	47434000	19226000	22062	2517	20886	136408;136409;136410;136411;136412	185306;185307;185308;185309;185310;185311	185307			6	
HEAMITDLEER	0	Unmodified	1342.6187	0.61871473	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	38.238	37.283	2;3	3.8971E-07	31813	160511_QHF_FH_JSI11i_2	120.06	100.93			1.0337	0.97703	222.14	8	8	Median	1.2863	1.0923	255.27	2	2	Median	0.96645	1.1644	320	2	2	Median	0.74348	0.7569	270.76	2	2	Median	1.5564	1.6999	312.98	2	2	Median	2079400000	1137100000	942310000	360990000	177420000	183570000	518770000	302670000	216100000	789100000	467410000	321690000	410590000	189640000	220950000	22063	1436	20887	136413;136414;136415;136416;136417;136418;136419;136420;136421	185312;185313;185314;185315;185316;185317;185318;185319;185320;185321;185322;185323	185318			12	
HEAMITDLEER	0	Oxidation (M)	1358.6136	0.61362935	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	28.108	26.819	2	0.026577	22513	160511_QHF_FH_JSI12i_2	46.462	31.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22064	1436	20887	136422	185324	185324		1098	1	
HEANNPQLK	1	Unmodified	1049.5254	0.52540669	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.38	3	8	6				4	2		4	5	8	6	6.3379	3.8647	2;3	1.1462E-06	3465	160511_QHF_FH_JSI11i_2	134.26	105.11			1.0777	1.1198	72.541	22	11	Median	1.1857	0.97609	81.596	3	1	Median	0.88673	1.0325	88.122	5	2	Median	1.2108	1.2168	78.748	8	6	Median	1.0943	1.1608	65.307	6	2	Median	9929200000	4973900000	4955200000	1254600000	463940000	790660000	2319700000	1344800000	974910000	3655600000	1869600000	1786000000	2699200000	1295600000	1403700000	22065	1386	20888	136423;136424;136425;136426;136427;136428;136429;136430;136431;136432;136433;136434;136435;136436;136437;136438;136439;136440;136441;136442;136443;136444;136445	185325;185326;185327;185328;185329;185330;185331;185332;185333;185334;185335;185336;185337;185338;185339;185340;185341;185342;185343;185344;185345;185346;185347;185348;185349;185350;185351;185352;185353;185354;185355	185346			31	
HEANNPQLKEGLQNMEAR	1	Acetyl (K)	2120.0069	0.006899652	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		57.62	46.754	3	0.007498	25692	160513_QHF_FH_JSI11Kac_5	52.045	43.858			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5063800	5063800	0	0	0	0	0	0	0	5063800	5063800	0	0	0	0	22066	1386	20889	136446	185356	185356	1337		1	
HEASEIQIK	1	Unmodified	1053.5455	0.54547343	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	15.451	14.875	2	0.00038973	11872	160511_QHF_FH_JSI11i_2	85.676	41.229			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22067	2691	20890	136447;136448	185357;185358	185358			2	
HECGAAFTSK	1	Unmodified	1106.4815	0.48149296	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	2	2	9.0709	8.7804	2	0.00014953	6464	160511_QHF_FH_JSI11i_2	96.342	86.754			0.90729	0.9446	85.966	4	4	Median	NaN	NaN	NaN	0	0	Median	1.8116	2.2221	NaN	1	1	Median	0.83061	0.83871	103.84	2	2	Median	0.47311	0.51049	NaN	1	1	Median	388350000	206450000	181900000	0	0	0	58605000	16927000	41678000	256830000	140560000	116270000	72913000	48964000	23949000	22068	2456;2457	20891	136449;136450;136451;136452;136453	185359;185360;185361;185362;185363	185361			5	
HECQANGPEDLNR	0	Unmodified	1538.6532	0.65320275	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								1	3	4	2	11.328	10.876	2;3	4.1325E-41	8436	160511_QHF_FH_JSI12i_2	206.58	178.57			1.0088	1.0541	21.436	8	0	Median	1.0317	0.86694	NaN	1	0	Median	1.0302	1.2466	7.6692	2	0	Median	0.9076	0.91693	8.2171	3	0	Plateau	1.184	1.3152	7.7811	2	0	Median	624600000	310330000	314280000	34606000	15335000	19271000	137110000	69538000	67574000	285520000	150560000	134960000	167360000	74893000	92469000	22069	1925	20892	136454;136455;136456;136457;136458;136459;136460;136461;136462;136463	185364;185365;185366;185367;185368;185369;185370;185371;185372;185373;185374;185375;185376;185377	185366			13	
HEDSAIPR	0	Unmodified	923.44609	0.44609374	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	8.1422	7.7601	2	0.0070671	5536	160511_QHF_FH_JSI9i_2	58.917	37.371			1.693	1.8709	172.13	2	2	Median	NaN	NaN	NaN	0	0	Median	5.1367	6.3189	NaN	1	1	Median	0.558	0.55392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63329000	38180000	25149000	0	0	0	34108000	18162000	15946000	29221000	20018000	9203100	0	0	0	22070	4271	20893	136464;136465;136466;136467;136468	185378;185379;185380;185381;185382	185379			5	
HEEAPGHRPTTNPNASK	1	Unmodified	1841.8769	0.87687176	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.4265	7.8758	4	0.00082692	6017	160511_QHF_FH_JSI10i_3	52.112	46.332			0.56775	0.66331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56775	0.66331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97605000	61858000	35747000	0	0	0	97605000	61858000	35747000	0	0	0	0	0	0	22071	1191	20894	136469	185383;185384	185384			2	
HEEILQNLQK	1	Unmodified	1250.6619	0.66190017	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		34.958	34.275	2	1.6377E-05	30057	160511_QHF_FH_JSI10i_2	111.46	87.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24784000	24784000	0	0	0	0	6161600	6161600	0	18622000	18622000	0	0	0	0	22072	1360	20895	136470;136471	185385;185386	185386			2	
HEELMLGDPCLK	1	Unmodified	1440.6741	0.67412112	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		5										2	3	52.97	51.585	2;3	2.7623E-10	44348	160511_QHF_FH_JSI11i_2	127.42	110.85			0.49489	0.53211	82.58	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49489	0.53211	82.58	3	3	Median	94158000	49827000	44331000	0	0	0	0	0	0	0	0	0	94158000	49827000	44331000	22073	878	20896	136472;136473;136474;136475;136476	185387;185388;185389;185390;185391	185391			5	
HEFQAETK	1	Unmodified	988.46141	0.46140945	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.13	4.29		7	6					2		4	4	3	4	7.756	6.1527	2	0.00018916	5272	160511_QHF_FH_JSI10i_2	135.71	112.67			0.39357	0.40832	196.11	14	13	Median	0.90114	0.7531	209.25	4	4	Median	0.85418	1.0306	250.72	4	4	Median	0.39986	0.39231	237.79	3	3	Median	0.38737	0.42498	171.15	3	2	Median	3697900000	1750500000	1947500000	855380000	373460000	481920000	1022600000	631030000	391580000	608580000	152140000	456430000	1211300000	593830000	617520000	22074	2328	20897	136477;136478;136479;136480;136481;136482;136483;136484;136485;136486;136487;136488;136489;136490;136491	185392;185393;185394;185395;185396;185397;185398;185399;185400;185401;185402;185403;185404;185405;185406	185405			15	
HEFQAETKK	2	Unmodified	1116.5564	0.55637247	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	5.9797	5.9523	2;3	1.0175E-05	3430	160511_QHF_FH_JSI12i_3	132.88	98.622			3.7366	3.4588	147.47	6	6	Median	NaN	NaN	NaN	0	0	Median	0.444	0.55047	NaN	1	1	Median	3.7366	3.4588	16.47	2	2	Median	5.2598	5.2698	207.3	3	3	Median	1546800000	454260000	1092500000	0	0	0	67010000	46997000	20013000	346930000	84963000	261970000	1132800000	322300000	810520000	22075	2328	20898	136492;136493;136494;136495;136496;136497	185407;185408;185409;185410;185411;185412	185412			6	
HEGALETLLR	0	Unmodified	1137.6142	0.6142217	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		47.608	47.347	2;3	0.0018284	41142	160511_QHF_FH_JSI11i_2	45.565	36.607			0.84515	0.85661	85.382	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84515	0.85661	85.382	2	2	Median	NaN	NaN	NaN	0	0	Median	101020000	37927000	63090000	0	0	0	0	0	0	101020000	37927000	63090000	0	0	0	22076	3766	20899	136498;136499	185413;185414	185414			2	
HEGLGAFYK	1	Unmodified	1020.5029	0.50288033	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.14	0.35		6	1							2	2	3		31.899	31.048	2;3	0.0011235	27151	160511_QHF_FH_JSI10i_2	80.229	27.826			0.98726	0.99055	81.725	6	6	Median	0.59536	0.50948	67.525	2	2	Median	1.1765	1.438	26.21	2	2	Median	1.3566	1.37	120.13	2	2	Median	NaN	NaN	NaN	0	0	Median	361340000	188280000	173050000	47844000	28956000	18889000	178090000	100940000	77152000	135400000	58390000	77013000	0	0	0	22077	3071	20900	136500;136501;136502;136503;136504;136505;136506	185415;185416;185417;185418;185419;185420;185421;185422	185421			8	
HEGPSAFLK	1	Unmodified	984.50288	0.50288033	4796	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.633	24.374	2	0.00079493	20339	160511_QHF_FH_JSI12i_2	83.265	38.818			1.4885	1.6392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4885	1.6392	NaN	1	0	Median	33589000	15831000	17759000	0	0	0	0	0	0	0	0	0	33589000	15831000	17759000	22078	4796	20901	136507	185423;185424	185423			2	
HEGTGQSSGITDQEK	1	Unmodified	1572.7016	0.70159273	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	8.445	7.9645	2;3	0.0010632	5843	160511_QHF_FH_JSI9i_2	78.653	59.873			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46374000	0	46374000	9583000	0	9583000	0	0	0	12189000	0	12189000	24603000	0	24603000	22079	4802	20902	136508;136509;136510;136511	185425;185426;185427;185428	185427			4	
HEHQVMLMR	0	Unmodified	1179.5641	0.56411716	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.116	20.129	3	0.053554	16412	160511_QHF_FH_JSI12i_3	18.168	11.508			5.7089	5.9333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7089	5.9333	NaN	1	1	Median	40635000	5138200	35497000	0	0	0	0	0	0	0	0	0	40635000	5138200	35497000	22080	2644	20903	136512	185429	185429			1	
HEIEAAIVR	0	Unmodified	1036.5665	0.56654322	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.432	23.63	2	0.00049206	19644	160511_QHF_FH_JSI11i_2	89.698	62.736			0.50705	0.52297	217.89	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11464	0.11204	NaN	1	1	Median	2.2427	2.4411	NaN	1	0	Median	105310000	65003000	40311000	0	0	0	0	0	0	49182000	38968000	10213000	56132000	26034000	30098000	22081	2455	20904	136513;136514	185430;185431	185431			2	
HEIEGTGLPQAQLLWR	0	Unmodified	1846.969	0.96898123	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								2	1	5	3	74.71	73.865	2;3	1.4396E-06	65398	160511_QHF_FH_JSI10i_2	94.09	84.302			1.1452	1.1566	45.617	7	3	Median	1.0372	0.90468	56.934	2	1	Median	0.70338	0.85662	NaN	1	0	Median	1.1452	1.1566	56.224	3	1	Median	1.4632	1.5914	NaN	1	1	Median	313390000	148500000	164890000	55803000	23099000	32704000	58099000	28899000	29200000	168010000	79341000	88669000	31479000	17163000	14316000	22082	4260	20905	136515;136516;136517;136518;136519;136520;136521;136522;136523;136524;136525	185432;185433;185434;185435;185436;185437;185438;185439;185440;185441;185442;185443;185444	185443			12	
HEIESLYTK	1	Unmodified	1118.5608	0.56078914	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	25.077	24.131	2	1.9682E-05	19946	160511_QHF_FH_JSI11i_2	120.12	105.96			2.6556	2.7271	112.3	6	6	Median	4.8258	3.9901	NaN	1	1	Median	0.86138	1.0549	80.498	2	2	Median	4.6329	4.6733	NaN	1	1	Median	1.8468	2.0453	191.22	2	2	Median	292420000	114030000	178390000	25664000	5556000	20108000	111260000	59008000	52253000	71319000	10288000	61031000	84182000	39181000	45001000	22083	4714	20906	136526;136527;136528;136529;136530;136531	185445;185446;185447;185448;185449;185450	185448			6	
HEILLSQSVR	0	Unmodified	1180.6564	0.65642086	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		6							3	2	3	3	1	33.928	30.351	2	0.0010102	26497	160511_QHF_FH_JSI10i_2	80.231	62.846			0.50229	0.46594	173.13	8	8	Median	0.37278	0.31983	31.359	2	2	Median	0.85369	1.0519	183.97	2	2	Median	0.54251	0.54379	236.71	3	3	Median	5.7445	6.449	NaN	1	1	Median	315340000	144030000	171310000	42000000	33455000	8545100	96709000	53855000	42854000	142240000	51905000	90337000	34391000	4816600	29574000	22084	1837	20907	136532;136533;136534;136535;136536;136537;136538;136539;136540	185451;185452;185453;185454;185455;185456;185457;185458;185459;185460	185457			10	
HEILQWVLQTDSQQ	0	Unmodified	1723.8529	0.85294842	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			84.855	84.243	2	0.0015261	74780	160511_QHF_FH_JSI10i_2	76.332	66.844			0.15237	0.17975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15237	0.17975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17455000	15417000	2037100	0	0	0	17455000	15417000	2037100	0	0	0	0	0	0	22085	3968	20908	136541	185461	185461			1	
HEILSRDPLLLAIIPK	1	Unmodified	1827.0982	0.098204487	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	94.32	94.219	3	1.8673E-11	79846	160511_QHF_FH_JSI12i_3	103.85	92.085			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22086	4831	20909	136542;136543;136544	185462;185463;185464	185464			3	
HEIVQTLSLK	1	Unmodified	1166.6659	0.66592292	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.13		6	2						3	1	2	4	4	44.29	41.2	2	5.6026E-06	35443	160511_QHF_FH_JSI11i_2	117.52	75.644			3.4053	3.7407	134.26	9	9	Median	3.1564	2.6521	NaN	1	1	Median	3.511	4.1613	0.65131	2	2	Median	3.6099	3.7407	198.99	3	3	Median	2.6844	2.9471	165.3	3	3	Median	2004100000	929870000	1074200000	234620000	95052000	139570000	262640000	91429000	171210000	826930000	382890000	444040000	679900000	360500000	319400000	22087	2374	20910	136545;136546;136547;136548;136549;136550;136551;136552;136553;136554;136555	185465;185466;185467;185468;185469;185470;185471;185472;185473;185474;185475;185476	185471			12	
HEKFSEVLK	2	Acetyl (K)	1157.6081	0.60807369	1017	P12277	CKB	Creatine kinase B-type	yes	yes	1	0	0	1			By MS/MS		15.3	0.471								2	1			3		48.784	38.525	2;3	0.010809	21668	160513_QHF_FH_JSI11Kac_5	51.445	32.202			0.26063	0.25431	68.826	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26063	0.25431	68.826	2	1	Median	NaN	NaN	NaN	0	0	Median	96114000	92914000	3199800	0	0	0	0	0	0	96114000	92914000	3199800	0	0	0	22088	1017	20911	136556;136557;136558	185477;185478;185479;185480	185480	829		4	
HELENLR	0	Unmodified	909.46683	0.46682918	5059	Q9NW15	ANO10	Anoctamin-10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		10.732	10.532	2	0.020283	8003	160511_QHF_FH_JSI11i_2	60.799	0			2.0607	2.0194	164.04	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0607	2.0194	164.04	2	2	Median	NaN	NaN	NaN	0	0	Median	114570000	47593000	66975000	0	0	0	0	0	0	114570000	47593000	66975000	0	0	0	22089	5059	20912	136559;136560;136561	185481;185482;185483	185481			3	
HELIEFR	0	Unmodified	942.49232	0.49231565	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							4	2	2	2	37.803	36.747	2	0.0020489	31884	160511_QHF_FH_JSI9i_2	113.7	70.696			0.95566	0.81397	67.526	10	7	Median	0.97934	0.81397	72.025	4	3	Median	0.8639	1.0555	113.44	2	2	Median	0.7384	0.76713	59.954	2	1	Median	0.93316	1.0512	87.043	2	1	Median	1163700000	583110000	580590000	194200000	78813000	115390000	321880000	184360000	137520000	334280000	148740000	185540000	313350000	171190000	142150000	22090	2155	20913	136562;136563;136564;136565;136566;136567;136568;136569;136570;136571	185484;185485;185486;185487;185488;185489;185490;185491;185492;185493;185494	185487			11	
HELLLGAGSGPGAGQQQATPGALLQAGPPR	0	Unmodified	2848.4944	0.49438792	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	4	2	74.672	74.006	3	2.0631E-63	65193	160511_QHF_FH_JSI9i_2	218.29	203.88			0.8194	0.80813	73.814	10	10	Median	0.94108	0.79686	113.75	2	2	Median	0.44859	0.52003	109.88	3	3	Median	0.99929	0.9715	60.534	4	4	Median	1.0357	1.0725	NaN	1	1	Median	598810000	313840000	284970000	137090000	70974000	66114000	232480000	133010000	99470000	198510000	93051000	105460000	30727000	16807000	13920000	22091	4029	20914	136572;136573;136574;136575;136576;136577;136578;136579;136580;136581;136582	185495;185496;185497;185498;185499;185500;185501;185502;185503;185504;185505;185506	185500			12	
HELLQPFNVLYEK	1	Unmodified	1628.8562	0.85624288	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.19		10	13						10	8	7	8	10	79.595	76.375	2;3	2.2909E-66	70240	160511_QHF_FH_JSI10i_2	227.31	214.73			1.0323	1.0136	53.517	30	19	Median	1.2387	1.038	48.033	7	5	Median	0.57763	0.69088	61.484	6	3	Median	1.0294	1.053	51.458	8	4	Median	0.89419	0.98981	57.605	9	7	Median	4953700000	2241100000	2712700000	781960000	261850000	520100000	1353200000	677110000	676080000	1733400000	800270000	933130000	1085200000	501820000	583350000	22092	5475	20915	136583;136584;136585;136586;136587;136588;136589;136590;136591;136592;136593;136594;136595;136596;136597;136598;136599;136600;136601;136602;136603;136604;136605;136606;136607;136608;136609;136610;136611;136612;136613;136614;136615	185507;185508;185509;185510;185511;185512;185513;185514;185515;185516;185517;185518;185519;185520;185521;185522;185523;185524;185525;185526;185527;185528;185529;185530;185531;185532;185533;185534;185535;185536;185537;185538;185539;185540;185541;185542;185543;185544;185545;185546;185547;185548;185549;185550;185551;185552;185553;185554;185555;185556;185557;185558;185559;185560;185561;185562;185563;185564;185565;185566;185567;185568;185569;185570;185571;185572;185573;185574;185575;185576;185577;185578;185579;185580;185581;185582;185583	185559			77	
HELLSLASSNHLGK	1	Unmodified	1504.7998	0.79979063	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.18		7	11						4	4	6	7	5	45.145	42.955	2;3	1.123E-17	36362	160511_QHF_FH_JSI12i_3	206.32	192.65			1.308	1.2761	122.86	22	18	Median	2.8093	2.332	90.32	4	3	Median	0.64255	0.77997	137.5	6	5	Median	1.2612	1.2565	123.22	7	6	Median	0.75053	0.83634	148.37	5	4	Median	4657200000	2217500000	2439700000	323620000	119550000	204070000	413830000	229780000	184060000	1579000000	722080000	856890000	2340800000	1146100000	1194700000	22093	283	20916	136616;136617;136618;136619;136620;136621;136622;136623;136624;136625;136626;136627;136628;136629;136630;136631;136632;136633;136634;136635;136636;136637	185584;185585;185586;185587;185588;185589;185590;185591;185592;185593;185594;185595;185596;185597;185598;185599;185600;185601;185602;185603;185604;185605;185606;185607;185608	185605			25	
HELQANCYEEVK	1	Unmodified	1518.6773	0.67729224	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.88	2	16	8				2	10		7	9	13	9	26.364	23.229	2;3	9.2944E-17	19762	160511_QHF_FH_JSI12i_2	208.72	178.98			0.47165	0.49185	158.24	32	31	Median	1.8594	1.5142	178.38	5	5	Median	0.21467	0.23606	177.2	7	6	Median	0.43159	0.41289	149.03	12	12	Median	1.1881	1.3023	165.34	8	8	Median	5539500000	2732300000	2807200000	525010000	256700000	268310000	1063600000	590610000	473020000	2609900000	1330600000	1279300000	1340900000	554370000	786570000	22094	1236	20917	136638;136639;136640;136641;136642;136643;136644;136645;136646;136647;136648;136649;136650;136651;136652;136653;136654;136655;136656;136657;136658;136659;136660;136661;136662;136663;136664;136665;136666;136667;136668;136669;136670;136671;136672;136673;136674;136675	185609;185610;185611;185612;185613;185614;185615;185616;185617;185618;185619;185620;185621;185622;185623;185624;185625;185626;185627;185628;185629;185630;185631;185632;185633;185634;185635;185636;185637;185638;185639;185640;185641;185642;185643;185644;185645;185646;185647;185648;185649;185650;185651;185652;185653	185618			45	
HELQANCYEEVKDR	1	Acetyl (K)	1831.8159	0.81591098	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		42.887	32.644	3	0.0021238	18598	160513_QHF_FH_JSI11Kac_5	54.501	49.517			0.28518	0.27217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28518	0.27217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8326300	5351600	2974700	0	0	0	0	0	0	8326300	5351600	2974700	0	0	0	22095	1236	20918	136676;136677	185654;185655	185654	1126		2	
HELQVEMK	1	Unmodified	1012.5012	0.50116577	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	20.12	19.42	2	0.00024346	16009	160511_QHF_FH_JSI11i_2	133.57	87.148			3.0207	3.1341	135.38	5	1	Median	3.7084	3.1341	NaN	1	0	Median	2.6179	3.1778	NaN	1	0	Median	0.72127	0.72088	201.07	2	1	Median	4.3364	4.8932	NaN	1	0	Median	395880000	141640000	254240000	53966000	10780000	43186000	73105000	16474000	56631000	200270000	102380000	97889000	68546000	12011000	56535000	22096	432	20919	136678;136679;136680;136681;136682	185656;185657;185658;185659	185659			4	
HELQVEMK	1	Oxidation (M)	1028.4961	0.4960804	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			20.165	19.345	2	0.028312	16616	160511_QHF_FH_JSI10i_2	70.919	44.317			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7571600	0	7571600	0	0	0	7571600	0	7571600	0	0	0	0	0	0	22097	432	20919	136683	185660	185660			1	
HELTEISNVDVETQSGK	1	Unmodified	1884.9065	0.90650013	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	2	14								3	5	3	5	43.547	42.651	2;3	9.199E-17	37323	160511_QHF_FH_JSI9i_2	125.61	91.726			1.7965	1.8566	84.59	9	9	Median	3.0981	2.6874	NaN	1	1	Median	0.37486	0.45738	80.529	3	3	Plateau	1.9056	1.9163	4.4769	2	2	Median	1.0358	1.0744	124.98	3	3	Median	621750000	304690000	317050000	90301000	26193000	64108000	225160000	148290000	76866000	136240000	57235000	79008000	170040000	72973000	97072000	22098	2286	20920	136684;136685;136686;136687;136688;136689;136690;136691;136692;136693;136694;136695;136696;136697;136698;136699	185661;185662;185663;185664;185665;185666;185667;185668;185669;185670;185671;185672;185673;185674;185675;185676;185677;185678;185679;185680	185672			20	
HEMLPASLIQAQR	0	Unmodified	1492.782	0.78203208	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		54.568	54.107	2	0.0070163	47904	160511_QHF_FH_JSI11i_3	51.927	43.028			0.76189	0.81337	87.952	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2292	1.5149	NaN	1	0	Median	0.47223	0.43671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66495000	38851000	27643000	0	0	0	31155000	16605000	14551000	35340000	22247000	13093000	0	0	0	22099	1764	20921	136700;136701	185681;185682	185681			1	
HEMLPEFYK	1	Unmodified	1192.5587	0.55868065	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	6.24		8							3	1	2	4	4	51.433	49.442	2;3	1.4006E-05	43372	160511_QHF_FH_JSI9i_2	109.71	97.087			1.1759	1.1435	70.567	8	7	Median	0.97235	0.82693	NaN	1	0	Median	0.9231	1.1263	98.942	2	2	Median	0.95068	0.96207	101.34	2	2	Median	0.72457	0.81167	83.609	3	3	Plateau	1303200000	712770000	590450000	142210000	84142000	58069000	191910000	88018000	103890000	620450000	334290000	286160000	348650000	206320000	142330000	22100	3343	20922	136702;136703;136704;136705;136706;136707;136708;136709;136710;136711;136712	185683;185684;185685;185686;185687;185688;185689;185690;185691;185692;185693	185688			11	
HENILGFIAADNK	1	Unmodified	1440.7361	0.73612775	1462	P36897;Q8NER5;P36896	TGFBR1;ACVR1C;ACVR1B	TGF-beta receptor type-1;Activin receptor type-1C;Activin receptor type-1B	yes	no	0	0	0	0				By MS/MS	2	0		1											1	66.047	64.748	3	0.0028457	55690	160511_QHF_FH_JSI12i_2	45.992	36.459			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22101	1462	20923	136713	185694	185694			1	
HENVIGLLDVFTPAR	0	Unmodified	1679.8995	0.89950468	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	97.198	97.021	3	2.04E-05	83187	160511_QHF_FH_JSI12i_3	63.631	44.9			1.9074	2.2658	102.92	3	3	Plateau	0.40389	0.36795	NaN	1	1	Median	1.9074	2.2658	NaN	1	1	Median	2.1852	2.1076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34110000	15291000	18820000	4018200	3212600	805600	15486000	7462000	8023600	14607000	4616000	9990600	0	0	0	22102	2736	20924	136714;136715;136716;136717	185695;185696;185697;185698	185698			4	
HEQEYMEVR	0	Unmodified	1219.5292	0.52917144	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		14	2							4	5	3	4	17.319	16.58	2;3	3.2459E-11	13699	160511_QHF_FH_JSI12i_2	157.66	132.77			1.0084	0.97735	118.15	12	8	Median	0.81613	0.6986	58.97	4	2	Median	1.0809	1.3055	130.72	3	3	Plateau	1.2186	1.2348	134.99	2	2	Median	1.6692	1.9048	157.97	3	1	Median	1994000000	821310000	1172700000	274720000	143990000	130730000	509190000	208480000	300710000	848550000	349920000	498630000	361540000	118920000	242630000	22103	2655	20925	136718;136719;136720;136721;136722;136723;136724;136725;136726;136727;136728;136729;136730;136731;136732;136733	185699;185700;185701;185702;185703;185704;185705;185706;185707;185708;185709;185710;185711;185712;185713;185714;185715;185716;185717	185700			19	
HEQEYMEVR	0	Oxidation (M)	1235.5241	0.52408606	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	17.36	16.676	2	0.00066021	13360	160511_QHF_FH_JSI11i_2	106.18	94.131			0.68135	0.70341	52.472	6	2	Median	0.75329	0.6534	NaN	1	0	Median	0.61628	0.75724	NaN	1	0	Median	0.65205	0.63878	106.71	2	1	Median	0.56995	0.62785	46.057	2	1	Median	230640000	133650000	96989000	42619000	19578000	23040000	48829000	29276000	19553000	90519000	55639000	34880000	48670000	29155000	19516000	22104	2655	20925	136734;136735;136736;136737;136738;136739	185718;185719;185720;185721;185722	185721		2072	5	
HEQGLSTALSVEK	1	Unmodified	1397.7151	0.71505795	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	35.853	34.969	2	1.9558E-05	29727	160511_QHF_FH_JSI11i_2	118.87	101.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67025000	67025000	0	0	0	0	0	0	0	44419000	44419000	0	22606000	22606000	0	22105	4119	20926	136740;136741	185723;185724	185724			2	
HEQILVLDPPTDLK	1	Unmodified	1616.8774	0.87737225	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.79		8						3		2	3	3	3	70.02	68.043	2;3	2.0589E-06	59035	160511_QHF_FH_JSI12i_2	151.78	137.36			1.0029	1.0067	5.7237	9	0	Median	1.1741	0.98813	8.111	2	0	Median	0.78294	0.94973	1.0342	2	0	Median	1.0327	1.0437	2.2731	3	0	Median	0.89683	0.98645	9.8254	2	0	Median	1360600000	676470000	684160000	226540000	100590000	125950000	329760000	178830000	150940000	501230000	253150000	248080000	303100000	143900000	159190000	22106	5185	20927	136742;136743;136744;136745;136746;136747;136748;136749;136750;136751;136752	185725;185726;185727;185728;185729;185730;185731;185732;185733;185734;185735;185736;185737;185738;185739;185740;185741;185742;185743;185744;185745;185746;185747;185748;185749;185750;185751;185752;185753;185754;185755;185756;185757;185758;185759	185728			35	
HEQISDLER	0	Unmodified	1125.5415	0.54145068	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	17.486	16.777	2	1.0314E-05	13986	160511_QHF_FH_JSI9i_2	127.76	35.982			0.94105	0.96771	118.39	8	8	Median	0.80963	0.70863	150.79	2	2	Median	1.0466	1.2694	145.09	2	2	Median	0.92118	0.9233	154.28	2	2	Median	0.80444	0.88092	164.46	2	2	Median	359030000	180520000	178510000	68275000	33121000	35154000	80002000	40756000	39246000	135560000	68222000	67341000	75187000	38422000	36766000	22107	1316	20928	136753;136754;136755;136756;136757;136758;136759;136760	185760;185761;185762;185763;185764;185765;185766;185767	185762			8	
HEQNIDCGGGYVK	1	Unmodified	1475.6463	0.64632646	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	4.95	4	16	8				4	3		6	9	9	11	19.843	17.371	2;3	2.6152E-24	14362	160511_QHF_FH_JSI11i_2	227.2	207.43			0.55766	0.57986	112.95	28	27	Median	0.42663	0.36183	125.72	5	5	Median	0.51359	0.60207	97.914	8	7	Median	0.59317	0.58579	154.65	7	7	Median	0.61025	0.6626	95.752	8	8	Median	5007600000	2411300000	2596300000	640450000	300090000	340360000	988210000	514090000	474130000	1941500000	787530000	1154000000	1437500000	809600000	627850000	22108	1297	20929	136761;136762;136763;136764;136765;136766;136767;136768;136769;136770;136771;136772;136773;136774;136775;136776;136777;136778;136779;136780;136781;136782;136783;136784;136785;136786;136787;136788;136789;136790;136791;136792;136793;136794;136795	185768;185769;185770;185771;185772;185773;185774;185775;185776;185777;185778;185779;185780;185781;185782;185783;185784;185785;185786;185787;185788;185789;185790;185791;185792;185793;185794;185795;185796;185797;185798;185799;185800;185801;185802;185803;185804;185805;185806;185807;185808;185809;185810;185811;185812;185813	185797			46	
HESGASIK	1	Unmodified	827.41373	0.41373097	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.96	2	11	9				1	7	2	6	8	9	9	3.8518	0.46598	2	6.6419E-06	1274	160513_QHF_FH_JSI9Kac_5	141.39	62.273			0.24892	0.26493	320.39	27	20	Median	0.2453	0.21423	382.38	5	5	Median	0.2345	0.27348	298.42	8	5	Median	0.11691	0.11448	359.96	7	5	Median	4.4091	4.4598	310.13	7	5	Median	11365000000	8142300000	3222800000	2957600000	2469300000	488320000	2178900000	1714000000	464930000	1610100000	685070000	925040000	4618400000	3273900000	1344500000	22109	1975	20930	136796;136797;136798;136799;136800;136801;136802;136803;136804;136805;136806;136807;136808;136809;136810;136811;136812;136813;136814;136815;136816;136817;136818;136819;136820;136821;136822;136823;136824;136825;136826;136827	185814;185815;185816;185817;185818;185819;185820;185821;185822;185823;185824;185825;185826;185827;185828;185829;185830;185831;185832;185833;185834;185835;185836;185837;185838;185839;185840;185841;185842;185843;185844;185845;185846;185847;185848;185849;185850;185851;185852;185853;185854;185855;185856;185857;185858	185824			45	
HESMPDVLK	1	Unmodified	1054.5117	0.51173046	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.122	30.742	2	0.0054366	26048	160511_QHF_FH_JSI11i_2	57.047	28.829			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22110	5361	20931	136828	185859	185859			1	
HESQMDSVVK	1	Oxidation (M)	1174.5288	0.52883709	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	1	0			By MS/MS	By MS/MS	6.8	5.88		3					2					3	2	10.788	6.7313	2	0.00046319	10612	160511_QHF_FH_JSI11i_2	93.649	72.142			2.532	10.475	111.51	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1697	4.1383	161.65	2	1	Median	2.489	2.7072	96.812	2	1	Median	173660000	28097000	145560000	0	0	0	0	0	0	102090000	8104700	93987000	71570000	19992000	51578000	22111	2159	20932	136829;136830;136831;136832;136833	185860;185861;185862;185863;185864	185863		1804	5	
HESQMDSVVK	1	Unmodified	1158.5339	0.53392246	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							3	1	2	2	14.023	13.375	2	6.5802E-07	10522	160511_QHF_FH_JSI11i_2	121.6	90.374			0.9142	0.76657	227.86	8	8	Median	3.0401	2.4666	179.75	3	3	Median	0.088339	0.10621	NaN	1	1	Median	1.6623	1.6856	330.28	2	2	Median	1.2123	1.3441	353.84	2	2	Median	1724500000	816410000	908070000	440030000	167980000	272050000	234560000	213730000	20827000	532460000	165100000	367360000	517430000	269590000	247830000	22112	2159	20932	136834;136835;136836;136837;136838;136839;136840;136841	185865;185866;185867;185868;185869;185870;185871;185872	185871			8	
HESQQDYSK	1	Unmodified	1120.4785	0.47851608	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	4.47		5					1			1	1	2	2	4.6344	3.0819	2	3.547E-16	2086	160511_QHF_FH_JSI12i_2	170.47	148.62			0.87877	0.92533	91.427	6	2	Median	1.3107	1.1179	NaN	1	0	Median	0.61707	0.76025	NaN	1	0	Median	0.97699	0.98333	200	2	2	Median	0.87877	0.95872	31.756	2	0	Median	1071000000	480090000	590920000	156310000	54609000	101700000	163900000	68477000	95424000	479910000	233820000	246100000	270880000	123180000	147700000	22113	2522	20933	136842;136843;136844;136845;136846;136847	185873;185874;185875;185876;185877;185878;185879	185874			7	
HESVEYKPPK	2	Unmodified	1212.6139	0.61388734	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.691	10.786	3	0.055083	7994	160511_QHF_FH_JSI12i_3	51.276	40.125			1.1889	1.2112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1889	1.2112	NaN	1	0	Median	75287000	30141000	45146000	0	0	0	0	0	0	0	0	0	75287000	30141000	45146000	22114	5626	20934	136848	185880	185880			0	
HETEFAELEVK	1	Unmodified	1330.6405	0.64049603	710	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.91	42.529	2	0.0016523	36425	160511_QHF_FH_JSI12i_2	66.692	51.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22115	710	20935	136849	185881	185881			1	
HETLTSLNLEK	1	Unmodified	1283.6721	0.67213051	3958	Q96A26	FAM162A	Protein FAM162A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	39.582	38.546	2	1.1846E-05	33630	160511_QHF_FH_JSI10i_2	108.7	75.434			7.3446	7.9391	131.12	4	4	Linear	NaN	NaN	NaN	0	0	Median	1.7948	2.2152	NaN	1	1	Median	5.7002	5.7017	NaN	1	1	Median	0.78877	0.87392	165.61	2	2	Median	398990000	159110000	239880000	0	0	0	113690000	55133000	58559000	103270000	20633000	82635000	182030000	83342000	98690000	22116	3958	20936	136850;136851;136852;136853	185882;185883;185884;185885;185886	185886			5	
HETWSGHVISS	0	Unmodified	1238.568	0.56799978	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	27.69	26.902	2	6.3481E-05	22572	160511_QHF_FH_JSI11i_2	93.267	84.053			0.99213	1.0284	63.89	8	2	Median	2.0237	1.7492	90.439	2	1	Median	0.62125	0.76065	58.51	2	0	Median	1.0576	1.0636	69.506	3	1	Median	0.90771	0.99432	NaN	1	0	Median	540110000	257660000	282450000	100340000	34285000	66053000	153670000	94958000	58710000	225400000	95381000	130010000	60709000	33038000	27671000	22117	5540	20937	136854;136855;136856;136857;136858;136859;136860;136861;136862	185887;185888;185889;185890;185891;185892;185893;185894;185895;185896;185897;185898;185899;185900;185901	185896			15	
HEVININLK	1	Unmodified	1078.6135	0.61349341	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.31	6.79		6	3						7	3	5	5	3	46.026	41.334	2	1.2339E-05	22573	160513_QHF_FH_JSI11Kac_6	111.95	76.502			1.4459	1.2909	118.19	12	12	Median	2.049	1.7926	75.881	3	3	Plateau	0.37093	0.4406	193.25	3	3	Median	0.84701	0.80267	114.52	4	4	Median	2.5835	2.8207	2.406	2	2	Median	1178100000	618470000	559680000	126680000	50758000	75924000	275910000	151270000	124640000	511380000	272050000	239340000	264160000	144390000	119780000	22118	2093	20938	136863;136864;136865;136866;136867;136868;136869;136870;136871;136872;136873;136874;136875;136876;136877;136878	185902;185903;185904;185905;185906;185907;185908;185909;185910;185911;185912;185913;185914;185915;185916;185917	185905			16	
HEVLLISAEQDK	1	Unmodified	1380.7249	0.72489436	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	41.06	39.689	2	0.00061378	33952	160511_QHF_FH_JSI12i_2	82.417	75.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5757400	0	5757400	0	0	0	0	0	0	0	0	0	5757400	0	5757400	22119	2147	20939	136879;136880	185918;185919	185918			2	
HEVSASTQSTPASSR	0	Unmodified	1543.7227	0.72266253	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	8.3302	7.8919	2;3	7.2552E-07	5656	160511_QHF_FH_JSI11i_2	131.37	104.85			0.81138	0.89873	67.476	6	6	Median	0.44814	0.38824	NaN	1	1	Median	0.68775	0.84092	57.781	2	2	Median	1.0473	1.0491	70.259	2	2	Median	1.8875	2.0656	NaN	1	1	Median	136750000	74407000	62345000	14308000	10513000	3795400	43026000	24002000	19023000	54016000	26565000	27450000	25402000	13327000	12076000	22120	2162	20940	136881;136882;136883;136884;136885;136886;136887	185920;185921;185922;185923;185924;185925;185926	185924			7	
HEVSGETVVFQGGALGK	1	Unmodified	1713.8686	0.86859848	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								1	4	3	4	49.294	48.291	2;3	1.9279E-10	42562	160511_QHF_FH_JSI10i_2	140.24	114.2			0.6381	0.61452	79.288	10	10	Median	0.62435	0.53184	NaN	1	1	Median	0.67671	0.84076	115.66	2	2	Median	0.87664	0.88422	90.677	3	3	Plateau	0.82868	0.91055	89.586	4	4	Median	899050000	520000000	379050000	204370000	128890000	75477000	202300000	117740000	84552000	238160000	123690000	114470000	254230000	149680000	104550000	22121	2997	20941	136888;136889;136890;136891;136892;136893;136894;136895;136896;136897;136898;136899	185927;185928;185929;185930;185931;185932;185933;185934;185935;185936;185937;185938	185937			12	
HEVTILGGLNEFVVK	1	Unmodified	1653.909	0.90900673	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				87.116	86.627	3	0.015261	76304	160511_QHF_FH_JSI9i_2	37.77	30.568			2.0581	1.8084	NaN	1	0	Median	2.0581	1.8084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17058000	6976400	10082000	17058000	6976400	10082000	0	0	0	0	0	0	0	0	0	22122	1989	20942	136900	185939	185939			0	
HEWQVNGLDDIK	1	Unmodified	1452.6997	0.69974224	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									1	2	3	53.691	52.655	2;3	1.7649E-05	46206	160511_QHF_FH_JSI10i_2	91.961	65.288			1.0807	1.0575	25.556	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2957	1.3078	30.042	2	0	Median	1.4398	1.5766	27.619	3	2	Plateau	131660000	61970000	69689000	0	0	0	0	0	0	78466000	37395000	41071000	53194000	24575000	28619000	22123	5500	20943	136901;136902;136903;136904;136905;136906	185940;185941;185942;185943;185944;185945;185946;185947	185947			8	
HFADGLETDGTLQK	1	Unmodified	1530.7314	0.7314363	4707	Q9H410	DSN1	Kinetochore-associated protein DSN1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.578	39.663	2	0.00096178	34007	160511_QHF_FH_JSI11i_2	64.439	56.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22124	4707	20944	136907;136908	185948;185949	185949			2	
HFAVQVVDMLALHLPPEK	1	Unmodified	2043.0976	0.09755256	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			4							1		1	2	100.8	100.76	3;4	6.4294E-12	87334	160511_QHF_FH_JSI12i_3	143.46	134.36			0.99814	0.99859	19.192	4	0	Median	1.3745	1.1381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0907	1.006	NaN	1	0	Median	0.79009	0.84794	22.086	2	0	Median	131820000	66702000	65116000	19655000	8643400	11012000	0	0	0	20356000	10446000	9909900	91807000	47612000	44194000	22125	3741	20945	136909;136910;136911;136912	185950;185951;185952	185951			2	
HFCNKLWNATK	2	Acetyl (K)	1459.7031	0.70305348	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		57.561	48.242	2;3	0.00011968	26140	160513_QHF_FH_JSI11Kac_6	96.015	81.857			0.73791	0.75708	56.324	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.41122	0.48045	NaN	1	1	Median	0.44255	0.43247	79.19	2	2	Median	NaN	NaN	NaN	0	0	Median	45765000	27434000	18331000	0	0	0	11766000	9067800	2698500	33999000	18367000	15632000	0	0	0	22126	1283	20946	136913;136914;136915	185953;185954;185955	185954	1205		3	
HFCPNVPIILVANK	1	Unmodified	1620.881	0.88101784	2016	P62745	RHOB	Rho-related GTP-binding protein RhoB	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.404	75.262	3	0.00046793	65291	160511_QHF_FH_JSI12i_3	72.496	65.294			0.68325	0.66905	139.3	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27	0.24984	NaN	1	1	Median	1.729	1.7916	NaN	1	1	Median	126180000	67223000	58953000	0	0	0	0	0	0	87233000	54403000	32830000	38943000	12820000	26123000	22127	2016	20947	136916;136917	185956;185957	185957			2	
HFCPNVPIILVGNK	1	Unmodified	1606.8654	0.86536778	1957;892	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		2	12							2	4	4	4	74.28	73.677	2;3	3.8718E-12	65525	160511_QHF_FH_JSI11i_3	202.36	187.9			2.5658	2.3977	165.53	12	12	Median	1.7486	1.5331	NaN	1	1	Median	4.0133	4.6103	161.64	3	3	Median	1.2014	1.1207	220.99	4	4	Median	1.2218	1.232	160.66	4	4	Median	1200900000	593520000	607360000	34258000	13545000	20712000	77482000	32421000	45061000	512140000	286020000	226110000	577010000	261530000	315480000	22128	1957;892	20948	136918;136919;136920;136921;136922;136923;136924;136925;136926;136927;136928;136929;136930;136931	185958;185959;185960;185961;185962;185963;185964;185965;185966;185967;185968;185969;185970;185971;185972	185959			15	
HFCPNVPIILVGNKK	2	Unmodified	1734.9603	0.9603308	1957;892	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		64.747	64	2;3	3.9785E-05	53980	160511_QHF_FH_JSI10i_3	105.95	103.09			0.19733	0.20736	41.249	4	4	Median	0.39929	0.31924	NaN	1	1	Median	0.21622	0.24988	NaN	1	1	Median	0.15469	0.14667	22.591	2	2	Median	NaN	NaN	NaN	0	0	Median	1489600000	1110600000	379050000	203970000	125660000	78314000	354450000	258710000	95746000	931170000	726190000	204990000	0	0	0	22129	1957;892	20949	136932;136933;136934;136935	185973;185974;185975;185976;185977;185978	185976			6	
HFDETVNR	0	Unmodified	1016.4676	0.46755746	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							3	3	4	2	12.231	11.834	2;3	1.0694E-36	9443	160511_QHF_FH_JSI9i_2	231.97	194.41			4.2069	4.2005	203.01	11	11	Median	8.587	7.3466	262.42	3	3	Median	4.4959	5.4898	201.1	3	3	Median	1.0826	1.0464	209.91	4	4	Median	0.2168	0.24829	NaN	1	1	Median	2801800000	1501000000	1300800000	567710000	195540000	372170000	737650000	412120000	325530000	1153500000	631240000	522230000	342950000	262060000	80890000	22130	816	20950	136936;136937;136938;136939;136940;136941;136942;136943;136944;136945;136946;136947	185979;185980;185981;185982;185983;185984;185985;185986;185987;185988;185989;185990	185981			12	
HFDSQVIIYGK	1	Unmodified	1305.6717	0.67173657	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	48.459	47.5	2	1.9494E-05	40733	160511_QHF_FH_JSI12i_2	105.86	87.083			0.31768	0.32189	34.159	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2655	0.25282	NaN	1	1	Median	0.38011	0.40984	NaN	1	1	Median	52024000	44205000	7818300	0	0	0	12082000	12082000	0	15343000	14330000	1012900	24599000	17793000	6805400	22131	4991	20951	136948;136949;136950	185991;185992;185993	185991			3	
HFEALANR	0	Unmodified	956.48281	0.48281359	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	2	1	18.805	18.615	2	0.0022094	14982	160511_QHF_FH_JSI12i_3	90.777	70.078			0.067757	0.07505	228.58	4	4	Median	NaN	NaN	NaN	0	0	Median	0.059368	0.07085	NaN	1	1	Median	0.56996	0.53472	343.69	2	2	Median	0.077332	0.0795	NaN	1	1	Median	440800000	278240000	162560000	0	0	0	64160000	62917000	1242800	264100000	112610000	151490000	112540000	102710000	9824800	22132	2674	20952	136951;136952;136953;136954;136955;136956	185994;185995;185996;185997;185998;185999	185999			6	
HFEANNGK	1	Unmodified	915.41988	0.41987898	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.5	6.06		3							1	1		2	1	5.1988	1.8223	2	0.00089666	2599	160511_QHF_FH_JSI11i_2	117.93	89.422			1.2264	1.305	98.387	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64321	0.65082	NaN	1	1	Median	2.3383	2.6166	NaN	1	1	Median	554890000	232900000	321990000	0	0	0	0	0	0	300610000	152760000	147850000	254280000	80141000	174140000	22133	5215	20953	136957;136958;136959;136960	186000;186001;186002;186003	186003			4	
HFEANNGKLPDNK	2	Unmodified	1482.7215	0.72154031	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.667	16.667	3	0.00072977	13815	160511_QHF_FH_JSI11i_3	68.83	48.821			0.085098	0.076243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.085098	0.076243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48155000	45789000	2366400	0	0	0	0	0	0	48155000	45789000	2366400	0	0	0	22134	5215	20954	136961	186004	186004			1	
HFEATDILVSK	1	Unmodified	1258.6558	0.65575216	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	55.326	54.247	2	7.9111E-13	46578	160511_QHF_FH_JSI12i_2	141.95	111.16			0.96857	0.8356	27.619	5	4	Median	1.0161	0.84286	3.5539	2	2	Median	0.66826	0.8356	NaN	1	1	Median	0.99602	1.0232	NaN	1	1	Median	0.43584	0.49129	NaN	1	0	Median	1303300000	834580000	468680000	226130000	141650000	84484000	317150000	211470000	105670000	426440000	251990000	174450000	333530000	229460000	104070000	22135	454	20955	136962;136963;136964;136965;136966	186005;186006;186007;186008;186009;186010	186005			6	
HFELGGDK	1	Unmodified	901.42938	0.42938104	2122;3945	P83881;Q969Q0	RPL36A;RPL36AL	60S ribosomal protein L36a;60S ribosomal protein L36a-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	6.6		8	4						7	5	6	4	4	22.789	19.197	2	0.0014005	16279	160511_QHF_FH_JSI12i_2	105.14	47.672			4.6617	5.0863	254.3	19	19	Median	0.17646	0.15016	263.21	5	5	Median	0.81578	0.94048	244.63	6	6	Median	9.5215	8.9745	264.98	4	4	Median	1.3321	1.4673	308.32	4	4	Median	5578900000	2829200000	2749600000	981750000	495590000	486160000	1418100000	792780000	625270000	1905200000	962310000	942870000	1273900000	578540000	695340000	22136	2122;3945	20956	136967;136968;136969;136970;136971;136972;136973;136974;136975;136976;136977;136978;136979;136980;136981;136982;136983;136984;136985	186011;186012;186013;186014;186015;186016;186017;186018;186019;186020;186021;186022;186023;186024;186025;186026;186027;186028;186029;186030;186031;186032;186033;186034	186014			24	
HFELGGDKK	2	Unmodified	1029.5243	0.52434406	2122;3945	P83881;Q969Q0	RPL36A;RPL36AL	60S ribosomal protein L36a;60S ribosomal protein L36a-like	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			9								1	3	5	14.02	13.957	2;3	0.00088801	11451	160511_QHF_FH_JSI11i_3	60.398	39.561			0.76289	0.78458	178.1	9	8	Median	NaN	NaN	NaN	0	0	Median	5.1632	5.9965	NaN	1	1	Median	0.32329	0.31032	263.73	3	2	Median	0.76289	0.78458	150.98	5	5	Median	2592400000	1045100000	1547400000	0	0	0	42865000	8739600	34125000	385430000	203090000	182340000	2164200000	833260000	1330900000	22137	2122;3945	20957	136986;136987;136988;136989;136990;136991;136992;136993;136994	186035;186036;186037;186038;186039;186040;186041;186042;186043;186044;186045	186035			11	
HFEQAIER	0	Unmodified	1028.5039	0.50394297	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	3	2	16.64	16.168	2	0.010742	13024	160511_QHF_FH_JSI11i_2	63.419	43.572			0.33494	0.34921	224.69	7	7	Median	2.5414	2.2296	340.74	2	2	Median	0.095678	0.11888	NaN	1	1	Median	0.36471	0.34921	249.79	3	3	Median	0.33494	0.37933	NaN	1	1	Median	351200000	228640000	122550000	57004000	19271000	37733000	60392000	54916000	5475800	149130000	88232000	60902000	84666000	66223000	18443000	22138	5640	20958	136995;136996;136997;136998;136999;137000;137001;137002	186046;186047;186048;186049;186050;186051;186052;186053	186050			8	
HFFINICHR	0	Unmodified	1242.608	0.60803088	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			54.146	45.572	3	0.0014842	24843	160513_QHF_FH_JSI10Kac_6	58.23	49.995			1.06	1.2566	79.169	2	1	Median	NaN	NaN	NaN	0	0	Median	1.06	1.2566	79.169	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37386000	19368000	18018000	0	0	0	37386000	19368000	18018000	0	0	0	0	0	0	22139	1005	20959	137003;137004	186054;186055	186054			1	
HFFLQGEK	1	Unmodified	1004.508	0.50796571	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	32.321	32.274	2	0.0013022	27164	160511_QHF_FH_JSI12i_3	107.29	64.229			0.25232	0.22979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25232	0.22979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105010000	100840000	4173400	0	0	0	0	0	0	32668000	28495000	4173400	72342000	72342000	0	22140	3022	20960	137005;137006	186056;186057	186057			2	
HFFSFLK	1	Unmodified	924.48577	0.48577371	3184	Q6ZRQ5	MMS22L	Protein MMS22-like	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				64.07	62.568	2	0.013962	51311	160511_QHF_FH_JSI9i_3	68.422	39.909			4.1005	3.4385	NaN	1	1	Median	4.1005	3.4385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15029000	4442100	10587000	15029000	4442100	10587000	0	0	0	0	0	0	0	0	0	22141	3184	20961	137007	186058	186058			1	
HFFTVTDPR	0	Unmodified	1118.5509	0.55089316	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.955	38.776	2	0.0036744	33111	160511_QHF_FH_JSI12i_3	82.671	56.845			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30039000	30039000	0	0	0	0	0	0	0	0	0	0	30039000	30039000	0	22142	4503	20962	137008	186059	186059			1	
HFFYFPVIYLYHR	0	Unmodified	1800.914	0.91403253	3131	Q6PKC3	TXNDC11	Thioredoxin domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	1	4	3	2	88.572	80.731	3;4	1.3247E-08	44492	160513_QHF_FH_JSI9Kac_6	108.7	103.49			1.0121	1.0596	97.45	9	6	Median	0.72913	0.64016	NaN	1	0	Median	0.24606	0.2922	123.89	3	3	Median	1.0187	0.98001	51.232	3	2	Plateau	1.8224	1.9386	85.431	2	1	Median	751070000	409050000	342020000	79489000	40124000	39365000	471920000	293510000	178410000	142560000	58860000	83700000	57102000	16559000	40542000	22143	3131	20963	137009;137010;137011;137012;137013;137014;137015;137016;137017;137018	186060;186061;186062;186063;186064;186065;186066;186067;186068;186069	186064			10	
HFGAEYR	0	Unmodified	878.4035	0.40350064	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	11.771	11.816	2	0.013116	9032	160511_QHF_FH_JSI12i_3	68.312	29.094			0.74772	0.7222	11.063	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84594	0.78096	NaN	1	0	Median	0.66091	0.66786	NaN	1	0	Median	133660000	80918000	52744000	0	0	0	0	0	0	49148000	25278000	23870000	84514000	55640000	28874000	22144	815	20964	137019;137020	186070	186070			1	
HFGAGGNQR	0	Unmodified	942.44201	0.44201141	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			5.4109	4.9227	2	5.6019E-05	2883	160511_QHF_FH_JSI9i_3	97.602	81.308			0.99249	0.95204	29.887	2	0	Median	1.4941	1.1761	NaN	1	0	Median	0.6593	0.77068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	737880000	320530000	417350000	490920000	198780000	292140000	246960000	121750000	125210000	0	0	0	0	0	0	22145	4212	20965	137021;137022	186071;186072	186072			2	
HFGLQILEHVVK	1	Unmodified	1418.8034	0.80341945	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.54	2.6			23						1	14	6	2	2	83.475	82.5	3	2.7314E-06	68911	160511_QHF_FH_JSI11i_3	117.23	108.28			0.97691	0.85466	32.29	17	6	Median	1.0108	0.85466	23.673	11	3	Median	0.68252	0.78886	42.647	2	1	Median	1.1624	1.076	41.141	2	1	Median	0.82577	0.84878	80.533	2	1	Median	401700000	211450000	190260000	131840000	61483000	70352000	43079000	23645000	19433000	105180000	54329000	50853000	121610000	71991000	49616000	22146	4831	20966	137023;137024;137025;137026;137027;137028;137029;137030;137031;137032;137033;137034;137035;137036;137037;137038;137039;137040;137041;137042;137043;137044;137045;137046	186073;186074;186075;186076;186077;186078;186079;186080;186081;186082;186083;186084;186085;186086;186087;186088;186089;186090;186091;186092;186093;186094;186095;186096;186097;186098;186099;186100;186101;186102;186103;186104;186105	186074			33	
HFGQAPSK	1	Unmodified	870.4348	0.43480077	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	7.5529	7.6018	2	0.0090621	5360	160511_QHF_FH_JSI11i_3	65.465	54.649			0.73699	0.7019	307.29	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73699	0.7019	294.17	2	2	Median	0.72621	0.73219	443.53	2	2	Median	456400000	259940000	196450000	0	0	0	0	0	0	165140000	89014000	76125000	291260000	170930000	120330000	22147	2984	20967	137047;137048;137049;137050	186106;186107;186108;186109	186107			4	
HFGTILNYLR	0	Unmodified	1232.6666	0.66659162	4690	Q9H3F6;Q13829;Q8WZ19	KCTD10;TNFAIP1;KCTD13	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3;BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2;BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			76.087	69.837	3	2.2572E-05	38059	160513_QHF_FH_JSI10Kac_6	95.502	77.682			0.45397	0.54282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45397	0.54282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9625400	8051300	1574000	0	0	0	9625400	8051300	1574000	0	0	0	0	0	0	22148	4690	20968	137051	186110	186110			1	
HFIDEELEK	1	Unmodified	1158.5557	0.55570376	2615	Q15047	SETDB1	Histone-lysine N-methyltransferase SETDB1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.531	35.108	2	0.016464	29888	160511_QHF_FH_JSI11i_2	53.493	41.858			5.2294	5.0873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.2294	5.0873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14059000	2001100	12058000	0	0	0	0	0	0	14059000	2001100	12058000	0	0	0	22149	2615	20969	137052	186111	186111			1	
HFIEQGINVCLCQSYAK	1	Unmodified	2065.9714	0.97136577	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	64.302	63.492	3	4.1663E-06	54649	160511_QHF_FH_JSI12i_3	100.35	90.695			0.28963	0.31547	185.09	3	3	Median	NaN	NaN	NaN	0	0	Median	0.47226	0.58495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.070064	0.075791	201.68	2	2	Median	60688000	47295000	13393000	0	0	0	28299000	19063000	9235800	0	0	0	32390000	28232000	4157300	22150	773	20970	137053;137054;137055	186112;186113;186114	186114			3	
HFIFFVQEFNLIDRR	0	Unmodified	1980.037	0.037001214	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	1		By MS/MS			16	0									1		1			89.039	83.319	3	3.8888E-05	47217	160513_QHF_FH_JSI10Kac_6	130.07	112.15			8.3469	9.9559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.3469	9.9559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75255000	7648000	67607000	0	0	0	75255000	7648000	67607000	0	0	0	0	0	0	22151	4788	20971	137056	186115	186115			1	
HFIHVLQTGQINQK	1	Unmodified	1661.9002	0.90017338	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			49.273	40.661	3	0.028849	22438	160513_QHF_FH_JSI10Kac_6	35.657	22.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22152	557	20972	137057	186116	186116			1	
HFIIQYVDNMYR	0	Unmodified	1597.7711	0.77113304	1102	P16591	FER	Tyrosine-protein kinase Fer	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				77.033	68.43	2	0.00012181	36785	160513_QHF_FH_JSI9Kac_6	96.89	87.936			2.7815	2.3012	NaN	1	1	Median	2.7815	2.3012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5519200	574840	4944400	5519200	574840	4944400	0	0	0	0	0	0	0	0	0	22153	1102	20973	137058	186117	186117			1	
HFILDECDK	1	Unmodified	1175.5281	0.5281088	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	37.781	36.532	2	0.00038973	31014	160511_QHF_FH_JSI11i_2	85.676	72.639			3.2031	3.6063	325.24	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2031	3.6063	325.24	2	2	Median	106860000	40646000	66218000	19455000	0	19455000	0	0	0	0	0	0	87408000	40646000	46763000	22154	2474	20974	137059;137060;137061;137062	186118;186119;186120;186121;186122	186122			5	
HFIQSLSK	1	Unmodified	958.52362	0.52361577	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		24.847	23.55	2	0.00034256	19479	160511_QHF_FH_JSI11i_3	106.04	69.021			2.2595	1.8468	106.2	4	4	Median	2.2595	1.8468	62.087	2	2	Median	2.4357	2.7842	168.21	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	495250000	171880000	323370000	263720000	76635000	187090000	231520000	95246000	136280000	0	0	0	0	0	0	22155	3117	20975	137063;137064;137065;137066;137067	186123;186124;186125;186126;186127	186123			5	
HFLCYYYYGGMIYTGLK	1	Unmodified	2147.9849	0.98489057	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	1	2	3	85.205	76.461	2;3	2.9976E-69	42212	160513_QHF_FH_JSI11Kac_6	258.33	227.51			5.8864	5.1343	214.43	5	5	Median	5.8864	5.1343	NaN	1	1	Median	12.742	14.886	NaN	1	1	Median	0.1348	0.1311	NaN	1	1	Median	2.0493	2.1935	246.28	2	2	Median	344570000	136930000	207640000	35495000	4016500	31479000	80348000	5354200	74994000	117020000	93027000	23990000	111710000	34531000	77176000	22156	5448	20976	137068;137069;137070;137071;137072;137073;137074	186128;186129;186130;186131;186132;186133;186134	186128			7	
HFLDFQGSAIPQAMQK	1	Unmodified	1816.893	0.89303909	3530	Q8N4Q0	ZADH2	Zinc-binding alcohol dehydrogenase domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	71.2	70.902	3	1.3512E-06	61476	160511_QHF_FH_JSI12i_3	87.566	75.874			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22157	3530	20977	137075	186135	186135			1	
HFLEAIENNK	1	Unmodified	1213.6091	0.60913632	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	36.884	36.241	2	4.4979E-09	30122	160511_QHF_FH_JSI12i_3	185.81	165.19			1.654	1.7119	114.29	4	4	Median	2.8788	2.4753	NaN	1	1	Median	0.95025	1.1839	NaN	1	1	Median	0.57518	0.5818	NaN	1	1	Median	8.222	8.4499	NaN	1	1	Median	390980000	145220000	245770000	59279000	24355000	34923000	108840000	46271000	62571000	79794000	53474000	26320000	143070000	21117000	121950000	22158	3754	20978	137076;137077;137078;137079;137080	186136;186137;186138;186139;186140;186141	186141			6	
HFLEESEK	1	Unmodified	1017.4767	0.47672516	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			14.893	14.264	2	0.014211	11779	160511_QHF_FH_JSI10i_2	60.91	46.128			7.156	8.864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7.156	8.864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21648000	2712700	18935000	0	0	0	21648000	2712700	18935000	0	0	0	0	0	0	22159	4039	20979	137081	186142	186142			1	
HFLIVFVHALEQQK	1	Unmodified	1707.9461	0.94606094	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	3	2	1	85.005	76.859	2;3	1.2859E-71	43504	160513_QHF_FH_JSI10Kac_6	258.81	218.26			0.18056	0.1556	368.02	5	5	Median	3.4402	2.9641	416.78	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90567	0.86126	494.1	2	2	Median	0.038468	0.0401	NaN	1	1	Median	873340000	607180000	266160000	195960000	66443000	129520000	319410000	319410000	0	246250000	111220000	135030000	111720000	110110000	1616000	22160	5622	20980	137082;137083;137084;137085;137086;137087;137088;137089;137090	186143;186144;186145;186146;186147;186148;186149;186150;186151	186150			9	
HFLLEEDKPEEPTAHAFVSTLTR	1	Unmodified	2666.334	0.33403068	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.6		2	17						6	3	13	6	3	77.282	74.575	3;4	4.1294E-20	65045	160511_QHF_FH_JSI10i_3	144.77	136.88			0.91144	1.021	43.632	24	13	Median	1.253	1.0877	22.908	3	2	Median	0.87425	1.0163	36.126	12	6	Median	0.82352	0.78262	66.141	6	3	Median	0.97065	0.98439	51.386	3	2	Median	1424100000	752570000	671500000	136690000	49196000	87492000	697060000	396990000	300070000	495990000	262130000	233860000	94333000	44256000	50077000	22161	1650	20981	137091;137092;137093;137094;137095;137096;137097;137098;137099;137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115	186152;186153;186154;186155;186156;186157;186158;186159;186160;186161;186162;186163;186164;186165;186166;186167;186168;186169;186170;186171;186172;186173;186174;186175;186176;186177;186178;186179	186168			28	
HFLLTFIR	0	Unmodified	1045.6073	0.60728582	5336	Q9UIW2	PLXNA1	Plexin-A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		77.84	70.058	2	0.00067876	37931	160513_QHF_FH_JSI11Kac_6	108.09	73.915			0.45254	0.47133	100.05	2	1	Median	NaN	NaN	NaN	0	0	Median	0.2037	0.23232	NaN	1	1	Median	1.0054	0.95622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162580000	124450000	38128000	0	0	0	113350000	103300000	10050000	49233000	21155000	28078000	0	0	0	22162	5336	20982	137116;137117	186180;186181	186180			2	
HFLPEMLSK	1	Unmodified	1100.5689	0.56885141	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	53.07	52.912	2	8.4319E-06	47281	160511_QHF_FH_JSI11i_3	107.69	89.469			10.263	9.6743	248.85	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.263	9.6743	NaN	1	1	Median	1.4836	1.4947	317.18	2	2	Median	453080000	163810000	289260000	0	0	0	0	0	0	123390000	14850000	108540000	329690000	148960000	180730000	22163	2084	20983	137118;137119;137120;137121	186182;186183;186184;186185	186183			4	
HFLQQATQVNAWDR	0	Unmodified	1712.8383	0.83830141	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			51.925	50.36	2	0.0042214	41240	160511_QHF_FH_JSI9i_3	55.401	41.437			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6832100	0	6832100	0	0	0	6832100	0	6832100	0	0	0	0	0	0	22164	1467	20984	137122;137123	186186;186187	186187			2	
HFLSDTGMACR	0	Unmodified	1293.5594	0.55942571	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.906	28.852	2	0.058887	24205	160511_QHF_FH_JSI12i_3	41.724	18.681			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15394000	15394000	0	0	0	0	0	0	0	0	0	0	15394000	15394000	0	22165	2970	20985	137124	186188	186188			1	
HFLVEDK	1	Unmodified	886.45487	0.45486751	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		23.554	22.672	2	0.0096908	19405	160511_QHF_FH_JSI9i_2	82.671	41.369			11.388	9.6774	95.322	3	3	Median	11.388	9.6774	NaN	1	1	Median	20.366	25.078	NaN	1	1	Median	3.7618	3.7268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	177700000	17359000	160340000	50754000	3348500	47405000	46228000	2453300	43774000	80717000	11557000	69160000	0	0	0	22166	1814	20986	137125;137126;137127;137128	186189;186190;186191;186192;186193	186190			5	
HFMELVTCGLSK	1	Unmodified	1420.6843	0.68429187	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	64.435	64.145	2	0.00022559	55610	160511_QHF_FH_JSI12i_3	94.363	66.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49641000	27611000	22030000	0	0	0	0	0	0	0	0	0	49641000	27611000	22030000	22167	3868	20987	137129;137130	186194;186195	186195			2	
HFNALGGWGELQNSVK	1	Unmodified	1755.8693	0.86926718	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			10								4	3	3	70.598	69.926	2;3	1.548E-09	60382	160511_QHF_FH_JSI12i_3	180.28	164.03			0.44773	0.53084	188.78	8	8	Median	NaN	NaN	NaN	0	0	Median	0.87426	1.0156	156.61	3	3	Median	1.3734	1.2964	276.13	2	2	Median	0.2273	0.21511	242.37	3	3	Median	969160000	509460000	459700000	0	0	0	174090000	85743000	88343000	367520000	206160000	161360000	427550000	217560000	209990000	22168	943	20988	137131;137132;137133;137134;137135;137136;137137;137138;137139;137140	186196;186197;186198;186199;186200;186201;186202;186203;186204;186205	186204			10	
HFNLLSSK	1	Unmodified	944.50797	0.50796571	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	34.939	34.26	2	0.0010125	28566	160511_QHF_FH_JSI10i_3	114.89	67.827			0.33123	0.32447	329.29	8	8	Median	0.87629	0.70561	488.74	2	2	Median	0.36483	0.41903	385.61	2	2	Median	1.1523	1.0663	497.8	2	2	Median	0.32008	0.32447	326.6	2	2	Median	2707600000	1463100000	1244500000	531400000	169590000	361810000	369150000	235980000	133170000	596100000	357750000	238360000	1210900000	699750000	511160000	22169	4448	20989	137141;137142;137143;137144;137145;137146;137147;137148;137149	186206;186207;186208;186209;186210;186211;186212;186213;186214;186215;186216;186217;186218	186208			13	
HFNLLSSKGADK	2	Acetyl (K)	1357.699	0.69901396	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		54.571	44.843	2	2.173E-05	24311	160513_QHF_FH_JSI11Kac_6	105.86	78.749			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2804700	2804700	0	0	0	0	0	0	0	2804700	2804700	0	0	0	0	22170	4448	20990	137150	186219	186219	3163		1	
HFPIEIDSTDYVSSGPSVR	0	Unmodified	2105.0065	0.006548526	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	73.028	72.285	3	4.4018E-05	62743	160511_QHF_FH_JSI12i_3	68.567	60.208			0.92301	0.93996	36.581	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0194	1.2308	NaN	1	0	Median	0.9253	0.8989	NaN	1	1	Median	0.71185	0.7148	45.041	2	2	Median	111950000	63715000	48234000	0	0	0	42299000	19673000	22626000	14197000	6916700	7280400	55453000	37125000	18328000	22171	2107	20991	137151;137152;137153;137154	186220;186221;186222;186223	186223			4	
HFPSVNWLISYSK	1	Unmodified	1576.8038	0.80381338	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	6	5	3	3	85.48	81.12	2;3	4.9987E-25	40201	160513_QHF_FH_JSI9Kac_6	193.23	169.38			0.98049	0.989	38.624	17	6	Median	1.0531	0.89944	35.353	6	3	Median	1.0013	1.1963	51.949	5	1	Median	1.0432	0.989	6.6216	3	1	Median	0.98049	1.0394	44.073	3	1	Plateau	2870100000	1431000000	1439100000	664830000	312670000	352160000	1325500000	751260000	574270000	603130000	216060000	387070000	276570000	150980000	125590000	22172	1479	20992	137155;137156;137157;137158;137159;137160;137161;137162;137163;137164;137165;137166;137167;137168;137169;137170;137171	186224;186225;186226;186227;186228;186229;186230;186231;186232;186233;186234;186235;186236;186237;186238;186239;186240;186241;186242;186243;186244;186245;186246;186247;186248;186249;186250;186251;186252;186253	186241			29	
HFPVGLFSGSK	1	Unmodified	1174.6135	0.61349341	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	3	1		59.473	58.25	2;3	0.00081282	48202	160511_QHF_FH_JSI9i_3	79.974	68.126			0.21714	0.21081	310.06	4	4	Linear	0.1506	0.12303	NaN	1	1	Median	1.494	1.7295	296.3	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124710000	61603000	63104000	37535000	31309000	6226600	70582000	30294000	40288000	16590000	0	16590000	0	0	0	22173	3163	20993	137172;137173;137174;137175;137176	186254;186255;186256;186257;186258	186258			5	
HFQEISWFLCPFHLSVAR	0	Unmodified	2273.1204	0.12041327	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.698	85.977	3	6.9231E-11	49093	160513_QHF_FH_JSI10Kac_6	169.19	135.35			0.4491	0.51498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4491	0.51498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111470000	90774000	20698000	0	0	0	111470000	90774000	20698000	0	0	0	0	0	0	22174	3037	20994	137177	186259;186260	186259			2	
HFQHLTPIK	1	Unmodified	1119.6189	0.61891314	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.887	26.85	3	0.052751	22597	160511_QHF_FH_JSI12i_3	24.089	13.332			0.57117	0.57353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57117	0.57353	NaN	1	1	Median	56786000	31906000	24880000	0	0	0	0	0	0	0	0	0	56786000	31906000	24880000	22175	3826	20995	137178	186261	186261			1	
HFSAADASR	0	Unmodified	960.44134	0.44134271	1001	P11441	UBL4A	Ubiquitin-like protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	9.1856	8.8906	2	0.0012377	6201	160511_QHF_FH_JSI12i_3	78.516	56.43			2.704	3.0908	40.996	4	4	Median	NaN	NaN	NaN	0	0	Median	2.2406	2.7615	NaN	1	1	Median	1.5439	1.5932	NaN	1	1	Median	3.6297	3.7559	11.631	2	2	Median	291120000	31231000	259890000	38398000	0	38398000	40029000	11467000	28562000	104950000	10827000	94125000	107740000	8937700	98801000	22176	1001	20996	137179;137180;137181;137182;137183;137184	186262;186263;186264;186265;186266;186267	186267			6	
HFSATLAYTK	1	Unmodified	1137.5819	0.58185893	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	2	2	1	42.071	34.522	2	0.0026371	29401	160511_QHF_FH_JSI12i_3	72.643	54.608			0.91602	0.84476	271.72	6	6	Median	0.99493	0.85588	273.35	2	2	Median	0.66214	0.77095	362.96	2	2	Median	5.828	5.7607	NaN	1	1	Median	0.021274	0.022496	NaN	1	1	Median	46845000	33635000	13210000	8932100	4707800	4224200	15420000	10277000	5143600	3968000	473760	3494300	18525000	18176000	348240	22177	2511	20997	137185;137186;137187;137188;137189;137190;137191	186268;186269;186270;186271;186272;186273;186274	186272			7	
HFSATLAYVK	1	Unmodified	1135.6026	0.60259438	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		52.494	43.304	2	1.0207E-05	23815	160513_QHF_FH_JSI10Kac_6	106.42	67.461			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18892000	18892000	0	4060200	4060200	0	7889000	7889000	0	6943100	6943100	0	0	0	0	22178	4765	20998	137192;137193;137194	186275;186276;186277	186277			3	
HFSEHPSTSK	1	Unmodified	1155.5309	0.530886	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	6.2958	6.3689	2;3	0.00018022	3923	160511_QHF_FH_JSI12i_3	83.081	79.064			2.4685	2.3917	114.04	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9227	1.788	NaN	1	1	Median	3.1691	3.1992	139.39	3	3	Median	746440000	311790000	434650000	0	0	0	0	0	0	116400000	54519000	61877000	630040000	257270000	372770000	22179	366	20999	137195;137196;137197;137198;137199;137200	186278;186279;186280;186281;186282;186283	186282			6	
HFSGLEEAVYR	0	Unmodified	1306.6306	0.63060004	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	3.02		14	5						1	3	3	6	8	46.274	45.506	2;3	4.9591E-18	39711	160511_QHF_FH_JSI12i_2	160.36	141.09			5.7811	6.42	206.78	15	14	Median	14.916	12.481	NaN	1	1	Median	7.173	8.9292	206.68	3	3	Median	3.463	3.2206	255.46	5	5	Median	1.3662	1.5226	201.63	6	5	Median	3011700000	1085100000	1926600000	221460000	20811000	200650000	821170000	279210000	541960000	1181200000	423580000	757610000	787840000	361520000	426330000	22180	1721	21000	137201;137202;137203;137204;137205;137206;137207;137208;137209;137210;137211;137212;137213;137214;137215;137216;137217;137218;137219;137220	186284;186285;186286;186287;186288;186289;186290;186291;186292;186293;186294;186295;186296;186297;186298;186299;186300;186301;186302;186303;186304;186305;186306;186307;186308	186286			25	
HFSIMDFNSEK	1	Unmodified	1353.6023	0.60233638	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.686	59.418	2	0.00079898	51171	160511_QHF_FH_JSI12i_3	80.24	43.845			0.44382	0.46001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44382	0.46001	NaN	1	1	Median	24711000	19629000	5082600	0	0	0	0	0	0	0	0	0	24711000	19629000	5082600	22181	3169	21001	137221	186309	186309			1	
HFSLLESQR	0	Unmodified	1115.5724	0.57235688	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				39.231	37.74	2	0.04274	30757	160511_QHF_FH_JSI9i_3	45.68	28.294			12.122	10.124	NaN	1	1	Median	12.122	10.124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14016000	2189800	11826000	14016000	2189800	11826000	0	0	0	0	0	0	0	0	0	22182	4747	21002	137222	186310	186310			1	
HFSQAEGSQLDEVR	0	Unmodified	1601.7434	0.74339797	3235	Q7L5Y9	MAEA	Macrophage erythroblast attacher	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	30.29	30.225	2;3	0.00041783	25514	160511_QHF_FH_JSI12i_3	55.335	42.953			3.4022	3.6222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4022	3.6222	NaN	1	1	Median	30538000	3106000	27432000	0	0	0	0	0	0	0	0	0	30538000	3106000	27432000	22183	3235	21003	137223;137224	186311;186312	186312			2	
HFSVEGQLEFR	0	Unmodified	1347.6571	0.65714914	898;880;2872	P08238;Q58FF7;P07900;Q14568;Q58FG1	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.77		14	12						23	6	12	13	18	59.452	54.923	2;3	5.5526E-24	47729	160511_QHF_FH_JSI11i_2	141.27	132.52			0.75732	0.81435	72.348	47	26	Median	0.74197	0.6339	33.944	5	1	Median	0.63346	0.76968	67.747	12	9	Median	1.166	1.1187	77.607	12	7	Median	0.73691	0.80077	75.193	18	9	Median	8616100000	3982100000	4634000000	1008200000	520940000	487250000	1999400000	1031800000	967600000	2196900000	884840000	1312000000	3411600000	1544500000	1867100000	22184	898;880;2872	21004	137225;137226;137227;137228;137229;137230;137231;137232;137233;137234;137235;137236;137237;137238;137239;137240;137241;137242;137243;137244;137245;137246;137247;137248;137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263;137264;137265;137266;137267;137268;137269;137270;137271;137272;137273	186313;186314;186315;186316;186317;186318;186319;186320;186321;186322;186323;186324;186325;186326;186327;186328;186329;186330;186331;186332;186333;186334;186335;186336;186337;186338;186339;186340;186341;186342;186343;186344;186345;186346;186347;186348;186349;186350;186351;186352;186353;186354;186355;186356;186357;186358;186359;186360;186361;186362;186363;186364;186365;186366;186367;186368;186369;186370;186371;186372;186373;186374;186375;186376;186377;186378;186379;186380;186381;186382;186383;186384;186385;186386;186387;186388;186389	186352			74	
HFTCNVLPR	0	Unmodified	1142.5655	0.56549736	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			34.275	32.854	2	0.0031076	27427	160511_QHF_FH_JSI10i_3	60.682	44.484			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22185	2216	21005	137274	186390	186390			1	
HFTEDIQTR	0	Unmodified	1145.5465	0.54653606	4242;2089	Q96SB4;Q9UPE1;P78362	SRPK1;SRPK3;SRPK2	SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		5								2	1		2	20.218	19.23	2	0.0041947	16076	160511_QHF_FH_JSI9i_2	67.993	51.849			0.92936	1.0862	158.1	4	4	Median	5.7634	4.9356	NaN	1	1	Median	0.40976	0.49387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52089	0.59073	197.6	2	2	Median	227700000	118010000	109690000	49242000	4652200	44590000	75197000	51893000	23304000	0	0	0	103260000	61461000	41802000	22186	4242;2089	21006	137275;137276;137277;137278;137279	186391;186392;186393;186394;186395	186393			5	
HFTEFVPLR	0	Unmodified	1144.6029	0.60292873	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							1	4	5	3	55.893	55.341	2;3	1.9954E-05	47330	160511_QHF_FH_JSI12i_3	107.01	82.853			2.991	3.6499	213	12	11	Median	0.40594	0.34422	NaN	1	1	Median	2.991	3.6499	121.49	4	4	Median	1.5469	1.4466	245.11	4	4	Median	18.184	18.134	333.03	3	2	Median	1145900000	416870000	729080000	51208000	29159000	22049000	344680000	107510000	237160000	380870000	152930000	227950000	369190000	127280000	241920000	22187	1479	21007	137280;137281;137282;137283;137284;137285;137286;137287;137288;137289;137290;137291;137292	186396;186397;186398;186399;186400;186401;186402;186403;186404;186405;186406;186407;186408;186409;186410;186411	186407			16	
HFTILDAPGHK	1	Unmodified	1234.6459	0.64585618	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.63		2	20						2	7	8	4	5	39.431	37.883	2;3	1.8456E-06	33033	160511_QHF_FH_JSI11i_3	112.13	105.9			0.99386	0.85052	133.51	23	21	Median	1.072	0.87271	119.36	7	6	Median	0.50661	0.62969	113.74	7	6	Median	1.6291	1.5201	198.35	4	4	Median	0.44786	0.44997	157.28	5	5	Median	9840000000	4608400000	5231600000	1281800000	405060000	876720000	1666100000	910870000	755200000	2033500000	890620000	1142900000	4858700000	2401900000	2456800000	22188	1069;3467	21008	137293;137294;137295;137296;137297;137298;137299;137300;137301;137302;137303;137304;137305;137306;137307;137308;137309;137310;137311;137312;137313;137314;137315;137316	186412;186413;186414;186415;186416;186417;186418;186419;186420;186421;186422;186423;186424;186425;186426;186427;186428;186429;186430;186431;186432;186433;186434;186435;186436;186437;186438;186439;186440;186441;186442;186443;186444;186445;186446;186447	186416			36	
HFTVMNYDPDVVLK	1	Unmodified	1676.8232	0.82322819	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		5								1	2		2	74.601	73.702	2;3	3.8605E-05	64044	160511_QHF_FH_JSI12i_2	79.201	64.325			0.72993	0.83481	82.832	4	4	Median	1.8441	1.603	NaN	1	1	Median	0.60498	0.72591	109.8	2	2	Median	NaN	NaN	NaN	0	0	Median	0.39976	0.44167	NaN	1	1	Median	141120000	78506000	62617000	23961000	9374300	14586000	102240000	58072000	44164000	0	0	0	14926000	11060000	3866600	22189	2509	21009	137317;137318;137319;137320;137321	186448;186449;186450;186451;186452	186449			5	
HFVALSTNTTK	1	Unmodified	1217.6404	0.64043645	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.19		15	23					3	15	15	13	15	13	30.642	26.995	2;3	4.263E-18	21542	160511_QHF_FH_JSI9i_3	161.63	152.77			0.058822	0.058991	420.41	48	41	Median	3.2853	2.8436	433.91	13	11	Median	0.069385	0.08291	410.73	12	11	Median	0.039671	0.040139	398.69	14	10	Median	31.48	35.167	492.55	9	9	Median	37196000000	18695000000	18501000000	6379000000	2521400000	3857600000	7521900000	3459700000	4062200000	12130000000	6776200000	5354000000	11165000000	5938100000	5227200000	22190	856	21010	137322;137323;137324;137325;137326;137327;137328;137329;137330;137331;137332;137333;137334;137335;137336;137337;137338;137339;137340;137341;137342;137343;137344;137345;137346;137347;137348;137349;137350;137351;137352;137353;137354;137355;137356;137357;137358;137359;137360;137361;137362;137363;137364;137365;137366;137367;137368;137369;137370;137371;137372;137373;137374;137375;137376;137377	186453;186454;186455;186456;186457;186458;186459;186460;186461;186462;186463;186464;186465;186466;186467;186468;186469;186470;186471;186472;186473;186474;186475;186476;186477;186478;186479;186480;186481;186482;186483;186484;186485;186486;186487;186488;186489;186490;186491;186492;186493;186494;186495;186496;186497;186498;186499;186500;186501;186502;186503;186504;186505;186506;186507;186508;186509;186510;186511;186512;186513;186514;186515;186516;186517;186518;186519;186520;186521;186522;186523;186524;186525;186526;186527;186528;186529;186530;186531;186532;186533;186534;186535;186536;186537;186538	186481			86	
HFVGILNK	1	Unmodified	926.53379	0.53378653	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	2	3	2	2	40.612	37.528	2	0.00027031	31661	160511_QHF_FH_JSI10i_3	132.94	95.295			2.3455	2.318	240.84	5	5	Median	NaN	NaN	NaN	0	0	Median	0.28964	0.33351	347.83	2	2	Median	2.3455	2.318	NaN	1	1	Median	0.66991	0.68283	293.11	2	2	Median	753670000	542340000	211330000	0	0	0	238950000	165750000	73196000	117540000	114520000	3027000	397180000	262070000	135110000	22191	4604	21011	137378;137379;137380;137381;137382;137383;137384;137385;137386	186539;186540;186541;186542;186543;186544;186545;186546;186547	186541			9	
HFVGMLPEK	1	Oxidation (M)	1072.5376	0.53755128	1925	P60981	DSTN	Destrin	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	27.856	27.601	2	0.0042052	22884	160511_QHF_FH_JSI12i_3	82.241	67.574			2.431	2.5915	231.03	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0076	1.1941	NaN	1	1	Median	5.8654	5.6244	NaN	1	1	Median	0.88903	0.88947	369.7	2	2	Median	324000000	132840000	191160000	0	0	0	49964000	24613000	25350000	61769000	12312000	49458000	212270000	95914000	116350000	22192	1925	21012	137387;137388;137389;137390	186548;186549;186550;186551	186550		1596	4	
HFVGMLPEK	1	Unmodified	1056.5426	0.54263666	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.32	5.45		12	15						7	8	9	10	7	42.408	39.884	2;3	1.2456E-05	21606	160513_QHF_FH_JSI11Kac_6	119.27	108.4			5.7819	5.6703	281.31	28	28	Median	6.1198	5.0273	234.57	6	6	Median	0.82835	0.9787	263.43	6	6	Median	8.7223	8.5921	309.34	9	9	Median	9.5751	10.027	350.32	7	7	Median	8476000000	4889000000	3587000000	1307400000	593760000	713610000	1677600000	979500000	698070000	3081500000	1740600000	1340900000	2409500000	1575100000	834410000	22193	1925	21012	137391;137392;137393;137394;137395;137396;137397;137398;137399;137400;137401;137402;137403;137404;137405;137406;137407;137408;137409;137410;137411;137412;137413;137414;137415;137416;137417;137418;137419;137420;137421;137422;137423;137424	186552;186553;186554;186555;186556;186557;186558;186559;186560;186561;186562;186563;186564;186565;186566;186567;186568;186569;186570;186571;186572;186573;186574;186575;186576;186577;186578;186579;186580;186581;186582;186583;186584;186585;186586;186587;186588;186589	186562			38	
HFVGWVWYER	0	Unmodified	1377.6618	0.66184059	896	P08236	GUSB	Beta-glucuronidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	77.264	68.82	2;3	9.1908E-10	38032	160513_QHF_FH_JSI10Kac_6	104.2	91.584			0.24742	0.27064	71.454	9	5	Linear	0.76975	0.66583	44.695	3	1	Plateau	0.2661	0.31429	28.485	2	2	Median	1.1017	1.0577	16.327	2	1	Median	1.7512	1.7978	60.263	2	1	Median	507750000	320140000	187610000	91450000	48381000	43069000	336330000	239430000	96903000	40939000	19229000	21710000	39022000	13098000	25924000	22194	896	21013	137425;137426;137427;137428;137429;137430;137431;137432;137433	186590;186591;186592;186593;186594;186595;186596;186597	186597			8	
HFVGYPTNSDFELK	1	Unmodified	1652.7835	0.78347187	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	3.81		15	7						2	6	6	6	6	60.541	59.692	2;3	1.1016E-11	51748	160511_QHF_FH_JSI11i_2	198.32	175.84			1.9108	1.9062	199.87	18	17	Median	0.28437	0.23848	155.15	3	3	Median	1.0359	1.2169	203.39	5	5	Median	5.1899	4.9385	214.12	5	5	Median	6.4315	6.6654	253.78	5	4	Median	2103800000	1011500000	1092200000	239150000	140580000	98572000	531560000	274770000	256780000	879460000	370100000	509360000	453600000	226090000	227510000	22195	2581	21014	137434;137435;137436;137437;137438;137439;137440;137441;137442;137443;137444;137445;137446;137447;137448;137449;137450;137451;137452;137453;137454;137455;137456;137457	186598;186599;186600;186601;186602;186603;186604;186605;186606;186607;186608;186609;186610;186611;186612;186613;186614;186615;186616;186617;186618;186619;186620;186621;186622;186623;186624;186625;186626;186627;186628;186629	186618			32	
HFVLDECDK	1	Unmodified	1161.5125	0.51245874	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	30.372	29.682	2	0.00028232	25225	160511_QHF_FH_JSI11i_2	95.358	85.577			4.1799	4.5318	236.85	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9211	1.9422	327.74	2	2	Median	4.1799	4.5318	NaN	1	1	Median	125900000	41549000	84356000	0	0	0	0	0	0	81790000	35337000	46453000	44114000	6211800	37902000	22196	97	21015	137458;137459;137460	186630;186631;186632	186632			3	
HFVPMGLYIVR	0	Unmodified	1330.722	0.72199801	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	3	1	77.528	68.818	2;3	9.5681E-12	36141	160513_QHF_FH_JSI12Kac_6	102.62	82.335			0.20733	0.19665	195.48	5	5	Median	NaN	NaN	NaN	0	0	Median	0.08252	0.09715	NaN	1	1	Median	0.2465	0.23828	231.92	3	3	Median	0.13563	0.1499	NaN	1	1	Median	97695000	71370000	26325000	10889000	10889000	0	23617000	22212000	1405200	53511000	29320000	24191000	9677600	8948800	728750	22197	3505	21016	137461;137462;137463;137464;137465;137466	186633;186634;186635;186636;186637;186638	186637			6	
HFVTISSPLATQIPQAVGAAYAAK	1	Unmodified	2440.3114	0.31144474	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		91.056	90.366	3	1.2631E-08	80336	160511_QHF_FH_JSI11i_3	88	81.047			1.1611	1.1245	180.79	3	3	Median	NaN	NaN	NaN	0	0	Median	2.1553	2.5386	246.88	2	2	Median	1.1611	1.1245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86771000	44121000	42650000	0	0	0	22671000	13527000	9144200	64101000	30595000	33506000	0	0	0	22198	1020	21017	137467;137468;137469	186639;186640;186641	186639			3	
HFYQPIWTLVGAGAK	1	Unmodified	1686.8882	0.88821171	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			16						8	6	7	6	5	85.504	82.266	2;3	6.7078E-10	42024	160513_QHF_FH_JSI10Kac_6	118.37	86.936			1.6554	1.5216	149.52	17	14	Median	6.3985	5.5041	291.88	2	2	Median	0.6264	0.73167	149.42	4	3	Median	1.669	1.5423	132.43	6	5	Median	1.8597	1.8334	139.82	5	4	Median	591030000	209070000	381960000	68492000	5378000	63114000	173600000	39016000	134580000	186290000	84014000	102280000	162650000	80658000	81989000	22199	5743	21018	137470;137471;137472;137473;137474;137475;137476;137477;137478;137479;137480;137481;137482;137483;137484;137485;137486;137487;137488;137489;137490;137491;137492;137493	186642;186643;186644;186645;186646;186647;186648;186649;186650;186651;186652;186653;186654;186655;186656;186657;186658;186659;186660;186661;186662;186663;186664;186665;186666;186667	186667			26	
HFYSLVK	1	Unmodified	892.48069	0.48068833	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	32.269	32.176	2	0.0093622	27210	160511_QHF_FH_JSI9i_3	69.176	47.405			1.7025	1.7191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7025	1.7191	NaN	1	1	Median	79953000	25698000	54255000	0	0	0	0	0	0	0	0	0	79953000	25698000	54255000	22200	4117	21019	137494;137495	186668;186669	186668			2	
HFYSLVKQR	1	Acetyl (K)	1218.6509	0.65094155	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			47.697	39.086	2	0.046815	21576	160513_QHF_FH_JSI10Kac_6	51.346	43.126			2.2239	2.6185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2239	2.6185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4157500	988460	3169000	0	0	0	4157500	988460	3169000	0	0	0	0	0	0	22201	4117	21020	137496	186670	186670			1	
HFYVVIPQIYK	1	Unmodified	1405.7758	0.77580772	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.25		1	7						15	5	6	7	5	80.092	74.502	2;3	2.2171E-40	38640	160513_QHF_FH_JSI9Kac_6	189.14	145.85			1.3673	1.3144	132.49	21	20	Median	0.25765	0.22401	172.92	4	4	Median	0.53553	0.64706	117.19	5	5	Median	1.7455	1.6621	141.28	7	6	Median	1.9053	2.0131	120.09	5	5	Median	2120500000	1173200000	947300000	328090000	215780000	112310000	986630000	549280000	437360000	559240000	294330000	264920000	246500000	113780000	132720000	22202	2934	21021	137497;137498;137499;137500;137501;137502;137503;137504;137505;137506;137507;137508;137509;137510;137511;137512;137513;137514;137515;137516;137517;137518;137519	186671;186672;186673;186674;186675;186676;186677;186678;186679;186680;186681;186682;186683;186684;186685;186686;186687;186688;186689;186690;186691;186692;186693	186684			23	
HFYWYLTNEGIQYLR	0	Unmodified	2001.9737	0.97373226	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	5.64		3	32	15	9	1	1		29	8	24	31	27	91.363	86.281	2;3;4	1.0599E-276	42303	160513_QHF_FH_JSI9Kac_6	377.87	358.23			0.9196	0.90402	115.49	74	38	Median	1.0897	0.90176	170.43	7	6	Median	1.245	1.4419	128.94	20	10	Median	0.86154	0.81837	103.33	26	12	Median	0.76109	0.79265	100.8	21	10	Median	111430000000	56096000000	55337000000	15862000000	9947100000	5915300000	35272000000	20480000000	14793000000	27609000000	13655000000	13954000000	32689000000	12014000000	20675000000	22203	1595	21022	137520;137521;137522;137523;137524;137525;137526;137527;137528;137529;137530;137531;137532;137533;137534;137535;137536;137537;137538;137539;137540;137541;137542;137543;137544;137545;137546;137547;137548;137549;137550;137551;137552;137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563;137564;137565;137566;137567;137568;137569;137570;137571;137572;137573;137574;137575;137576;137577;137578;137579;137580;137581;137582;137583;137584;137585;137586;137587;137588;137589;137590;137591;137592;137593;137594;137595;137596;137597;137598;137599;137600;137601;137602;137603;137604;137605;137606;137607;137608;137609	186694;186695;186696;186697;186698;186699;186700;186701;186702;186703;186704;186705;186706;186707;186708;186709;186710;186711;186712;186713;186714;186715;186716;186717;186718;186719;186720;186721;186722;186723;186724;186725;186726;186727;186728;186729;186730;186731;186732;186733;186734;186735;186736;186737;186738;186739;186740;186741;186742;186743;186744;186745;186746;186747;186748;186749;186750;186751;186752;186753;186754;186755;186756;186757;186758;186759;186760;186761;186762;186763;186764;186765;186766;186767;186768;186769;186770;186771;186772;186773;186774;186775;186776;186777;186778;186779;186780;186781;186782;186783;186784;186785;186786;186787;186788;186789;186790;186791;186792;186793;186794;186795;186796;186797;186798	186764			100	
HGAGAEISTVHPEQYAK	1	Unmodified	1793.8697	0.86966111	3697	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	31.257	30.133	3	0.00031892	25321	160511_QHF_FH_JSI11i_2	59.673	40.913			1.244	1.4627	93.471	2	2	Median	NaN	NaN	NaN	0	0	Median	2.2785	2.8328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67917	0.75531	NaN	1	1	Median	55563000	24412000	31151000	0	0	0	27859000	9525400	18333000	0	0	0	27704000	14886000	12818000	22204	3697	21023	137610;137611;137612;137613;137614	186799;186800;186801;186802;186803;186804	186802			6	
HGAGAEISTVNPEQYSK	1	Unmodified	1786.8486	0.84859132	2088;1619	P78356;P48426	PIP4K2B;PIP4K2A	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta;Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	37.048	36.156	3	6.9145E-06	30807	160511_QHF_FH_JSI11i_2	74.428	70.46			0.8825	0.94431	30.399	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1687	1.1708	NaN	1	0	Median	0.6664	0.76166	NaN	1	1	Median	95727000	41555000	54173000	0	0	0	0	0	0	59949000	21535000	38414000	35778000	20019000	15759000	22205	2088;1619	21024	137615;137616	186805;186806	186806			2	
HGASPELQK	1	Unmodified	965.49304	0.49304393	755	O96011	PEX11B	Peroxisomal membrane protein 11B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	7.7245	7.3142	2	0.0011621	4976	160511_QHF_FH_JSI11i_2	70.256	47.764			0.88339	0.93739	132.06	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3562	2.3849	NaN	1	0	Median	0.3312	0.36845	NaN	1	1	Median	122330000	55165000	67160000	0	0	0	0	0	0	85682000	30466000	55216000	36643000	24699000	11944000	22206	755	21025	137617;137618	186807;186808	186808			2	
HGASPELQKQIR	1	Acetyl (K)	1404.7474	0.74736113	755	O96011	PEX11B	Peroxisomal membrane protein 11B	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		33.877	24.992	3	0.01515	14096	160513_QHF_FH_JSI11Kac_6	47.429	32.968			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4066800	4066800	0	0	0	0	2289700	2289700	0	1777100	1777100	0	0	0	0	22207	755	21026	137619;137620;137621	186809;186810;186811	186809	364		3	
HGATHVFASK	1	Unmodified	1053.5356	0.53557744	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			5							1		1	3	7.8978	7.8232	2;3	0.00045909	4945	160511_QHF_FH_JSI12i_3	54.471	47.576			1.0668	1.0116	39.422	4	2	Median	1.5364	1.2209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81929	0.83813	44.298	3	2	Median	471580000	210360000	261230000	51234000	17848000	33387000	0	0	0	0	0	0	420350000	192510000	227840000	22208	403	21027	137622;137623;137624;137625;137626	186812;186813;186814;186815;186816	186814			5	
HGATVLTALGGILK	1	Unmodified	1349.8031	0.8030851	789	P02144	MB	Myoglobin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.448	82.239	3	0.0011185	71444	160511_QHF_FH_JSI12i_3	55.899	47.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22209	789	21028	137627	186817	186817			1	
HGDDLRR	0	Unmodified	867.43111	0.43111237	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1		By MS/MS			2	0		2									2			0.15522	-0.18881	2	0.01033	17	160511_QHF_FH_JSI10i_2	76.035	26.445		+	0.67426	0.79829	22.224	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67426	0.79829	22.224	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34676000	20073000	14603000	0	0	0	34676000	20073000	14603000	0	0	0	0	0	0	22210	51	21029	137628;137629	186818;186819	186818			2	
HGDEIITSTTSNYETQTFSSK	1	Unmodified	2345.0659	0.065913898	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	51.21	50.231	3	1.7385E-24	43473	160511_QHF_FH_JSI11i_2	180.76	171.6			0.857	0.86748	54.335	8	8	Median	1.1441	0.9596	71.013	2	2	Median	0.8518	1.0359	82.441	2	2	Median	0.98482	0.99757	63.145	2	2	Median	0.6878	0.76543	61.084	2	2	Median	509780000	256100000	253670000	128100000	54086000	74013000	93102000	54080000	39022000	126480000	61402000	65076000	162100000	86536000	75564000	22211	3101	21030	137630;137631;137632;137633;137634;137635;137636;137637	186820;186821;186822;186823;186824;186825;186826;186827;186828;186829;186830	186827			11	
HGDEIYIAPSGVQK	1	Unmodified	1512.7573	0.75725712	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	2	3	38.014	37.027	2;3	0.00013795	31457	160511_QHF_FH_JSI11i_2	111.63	86.775			0.69538	0.79291	24.085	6	4	Median	NaN	NaN	NaN	0	0	Median	0.77672	0.93758	NaN	1	1	Median	0.95119	0.98183	7.1377	2	1	Median	0.55669	0.62946	6.5912	3	2	Median	223950000	130250000	93695000	0	0	0	14922000	9840700	5080900	127810000	70706000	57099000	81220000	49706000	31515000	22212	4101	21031	137638;137639;137640;137641;137642;137643;137644	186831;186832;186833;186834;186835;186836	186835			6	
HGDLPDIQIK	1	Unmodified	1134.6033	0.60332266	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.57		5	1					2		1	3	3	1	48.142	44.309	2	6.5444E-08	37897	160511_QHF_FH_JSI11i_2	128.27	103.02			0.847	0.95454	21.707	7	0	Median	1.5514	1.3156	NaN	1	0	Median	0.83391	1.0265	26.979	3	0	Median	0.88256	0.89011	9.8829	2	0	Median	0.77557	0.87353	NaN	1	0	Median	3233800000	1413300000	1820500000	525140000	184970000	340170000	972790000	480330000	492450000	1005400000	408430000	596950000	730490000	339590000	390900000	22213	2094	21032	137645;137646;137647;137648;137649;137650;137651;137652	186837;186838;186839;186840;186841;186842;186843;186844;186845;186846;186847;186848;186849;186850;186851;186852;186853	186846			17	
HGDPGDAAQQEAK	1	Unmodified	1322.5851	0.58510641	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								1	3	4	5	6.9496	6.621	2;3	5.8579E-07	4502	160511_QHF_FH_JSI9i_1	133.32	115.01			0.80659	0.97218	50.071	13	9	Median	1.2376	1.0078	NaN	1	0	Median	0.80659	0.97218	28.016	3	1	Median	0.95185	0.93692	76.855	4	4	Median	0.52792	0.60344	46.811	5	4	Median	2598900000	1318900000	1280000000	281640000	85600000	196040000	565320000	314060000	251260000	884740000	461190000	423550000	867170000	458050000	409120000	22214	196	21033	137653;137654;137655;137656;137657;137658;137659;137660;137661;137662;137663;137664;137665	186854;186855;186856;186857;186858;186859;186860;186861;186862;186863;186864;186865;186866;186867	186866			13	
HGDPGDAAQQEAKHR	1	Acetyl (K)	1657.7557	0.75569399	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		18.315	8.8811	3	0.0030178	7538	160513_QHF_FH_JSI11Kac_5	62.68	50.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3942400	3942400	0	0	0	0	0	0	0	3942400	3942400	0	0	0	0	22215	196	21034	137666;137667	186868;186869	186869	106		2	
HGEAQVKIWR	1	Acetyl (K)	1264.6677	0.66765425	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	44.366	35.137	2	0.015809	19389	160513_QHF_FH_JSI10Kac_6	55.064	49.582			0.64715	0.72632	39.869	4	0	Median	1.412	1.2335	NaN	1	0	Median	0.67865	0.79759	NaN	1	0	Median	0.48618	0.47435	NaN	1	0	Median	0.61711	0.66142	NaN	1	0	Median	55516000	29503000	26013000	3855300	1122000	2733300	29244000	15036000	14208000	14911000	8607800	6302700	7506000	4737200	2768800	22216	1144	21035	137668;137669;137670;137671	186870;186871	186871	1003		2	
HGEEGVEAEK	1	Unmodified	1083.4833	0.4832671	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	5.8509	5.3963	2	0.0001284	3309	160511_QHF_FH_JSI12i_2	98.044	74.615			0.26844	0.29354	136.32	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25035	0.24997	NaN	1	1	Median	0.8343	0.91632	160.99	2	2	Median	153070000	95667000	57405000	0	0	0	0	0	0	45340000	33179000	12161000	107730000	62488000	45244000	22217	4800	21036	137672;137673;137674;137675;137676	186872;186873;186874;186875;186876	186872			5	
HGEIDYEAIVK	1	Unmodified	1272.635	0.63501672	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	46.181	45.202	2	1.8692E-29	39751	160511_QHF_FH_JSI10i_2	185.14	147.05			1.362	1.3957	51.623	4	2	Median	1.69	1.4116	NaN	1	0	Median	1.0976	1.3799	NaN	1	0	Median	0.79804	0.80022	NaN	1	1	Median	2.5233	2.821	NaN	1	1	Median	1156000000	413160000	742880000	225080000	79171000	145910000	301880000	87828000	214050000	352610000	119230000	233380000	276470000	126930000	149530000	22218	2006	21037	137677;137678;137679;137680;137681	186877;186878;186879;186880;186881;186882	186882			6	
HGEPEEDIVGLQAFQER	0	Unmodified	1952.9228	0.9228189	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			65.324	64.489	2	2.9167E-05	57155	160511_QHF_FH_JSI10i_2	94.191	84.14			0.80724	0.98774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80724	0.98774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20206000	12769000	7436900	0	0	0	20206000	12769000	7436900	0	0	0	0	0	0	22219	558	21038	137682;137683	186883;186884	186883			2	
HGESAWNLENR	0	Unmodified	1311.5956	0.59561152	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.21	0.409		37	10							10	8	12	17	26.737	25.963	2;3	1.9096E-29	21064	160511_QHF_FH_JSI11i_2	203.02	196.36			1.0774	1.0854	49.442	42	16	Median	1.5001	1.2867	35.263	10	3	Median	0.77215	0.95071	60.639	8	2	Median	1.148	1.0626	57.195	9	4	Median	0.69364	0.75946	34.901	15	7	Median	4394700000	2174000000	2220700000	700070000	243200000	456870000	894760000	468870000	425890000	1348800000	643420000	705330000	1451100000	818500000	632610000	22220	1144	21039	137684;137685;137686;137687;137688;137689;137690;137691;137692;137693;137694;137695;137696;137697;137698;137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719;137720;137721;137722;137723;137724;137725;137726;137727;137728;137729;137730	186885;186886;186887;186888;186889;186890;186891;186892;186893;186894;186895;186896;186897;186898;186899;186900;186901;186902;186903;186904;186905;186906;186907;186908;186909;186910;186911;186912;186913;186914;186915;186916;186917;186918;186919;186920;186921;186922;186923;186924;186925;186926;186927;186928;186929;186930;186931;186932;186933;186934;186935;186936;186937;186938;186939;186940	186911			53	
HGESEFNLLGK	1	Unmodified	1229.6041	0.60405094	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	45.459	44.509	2	8.9623E-05	39145	160511_QHF_FH_JSI10i_2	99.568	87.855			1.2793	1.4009	35.502	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3421	1.662	NaN	1	1	Median	0.83886	0.84009	NaN	1	0	Median	1.2793	1.4009	NaN	1	1	Median	148330000	79513000	68818000	0	0	0	47900000	23222000	24678000	73166000	43951000	29215000	27265000	12339000	14926000	22221	449	21040	137731;137732;137733	186941;186942;186943	186943			2	
HGESGSMAVFHQTQGPSYSESK	1	Unmodified	2350.0284	0.028422955	1068	P15151	PVR	Poliovirus receptor	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		33.181	33.181	3	2.6991E-05	28849	160511_QHF_FH_JSI11i_3	62.19	53.094			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22455000	22455000	0	0	0	0	0	0	0	22455000	22455000	0	0	0	0	22222	1068	21041	137734	186944	186944			1	
HGEVCPAGWK	1	Unmodified	1139.5182	0.51821282	2249;2364	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								1	4	3	4	21.445	20.657	2	1.0963E-06	17171	160511_QHF_FH_JSI10i_2	126.41	110.75			0.6442	0.72011	82.249	7	3	Median	NaN	NaN	NaN	0	0	Median	0.80761	0.9858	98.722	3	1	Median	0.49439	0.49155	5.57	2	0	Median	0.53848	0.57651	31.453	2	2	Median	217620000	120050000	97577000	0	0	0	87775000	35224000	52551000	93745000	60219000	33526000	36104000	24604000	11501000	22223	2249;2364	21042	137735;137736;137737;137738;137739;137740;137741;137742;137743;137744;137745;137746	186945;186946;186947;186948;186949;186950;186951;186952;186953;186954;186955	186954			11	
HGEVCPAGWKPGSDTIKPDVQK	3	Unmodified	2405.1798	0.17977864	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.76	3.35		4	23						2	3	18	5	3	44.957	43.241	3;4;5	5.339E-29	36792	160511_QHF_FH_JSI11i_3	175.77	163.29			0.75105	0.85479	64.853	26	18	Median	1.4334	1.1548	21.346	3	2	Median	0.7049	0.81262	68.107	16	13	Median	0.427	0.40212	74.124	4	2	Median	0.76216	0.8386	6.4166	3	1	Median	4020200000	2217000000	1803200000	85819000	41179000	44640000	1669200000	803860000	865350000	2049000000	1243700000	805360000	216130000	128260000	87868000	22224	2249	21043	137747;137748;137749;137750;137751;137752;137753;137754;137755;137756;137757;137758;137759;137760;137761;137762;137763;137764;137765;137766;137767;137768;137769;137770;137771;137772;137773;137774;137775	186956;186957;186958;186959;186960;186961;186962;186963;186964;186965;186966;186967;186968;186969;186970;186971;186972;186973;186974;186975;186976;186977;186978;186979;186980;186981;186982;186983;186984;186985;186986;186987;186988;186989;186990;186991;186992;186993;186994;186995;186996;186997	186960			42	
HGEVCPAGWKPGSETIIPDPAGK	2	Unmodified	2402.1689	0.1688796	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	4	5	2	60.738	60.161	3;4	9.0513E-10	52967	160511_QHF_FH_JSI11i_3	95.48	87.259			0.90533	0.90773	29.336	12	7	Median	1.3638	1.17	19.162	2	2	Median	0.8853	1.0782	36.569	4	3	Median	0.90533	0.86719	19.139	4	2	Median	0.70912	0.72535	6.4438	2	0	Median	1814400000	971240000	843180000	56575000	24739000	31836000	332580000	167170000	165410000	783260000	438370000	344880000	642010000	340960000	301050000	22225	2364	21044	137776;137777;137778;137779;137780;137781;137782;137783;137784;137785;137786;137787;137788	186998;186999;187000;187001;187002;187003;187004;187005;187006;187007;187008;187009;187010;187011;187012;187013;187014;187015;187016;187017;187018;187019;187020;187021;187022	187000			25	
HGFCGIPITDTGR	0	Unmodified	1429.6772	0.67723266	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								1	3	3	46.83	46.27	2	0.00024402	39874	160511_QHF_FH_JSI11i_2	72.2	57.324			0.41029	0.4146	85.907	6	6	Median	NaN	NaN	NaN	0	0	Median	0.13919	0.17015	NaN	1	1	Median	0.23412	0.22258	36.348	2	2	Median	0.97331	0.79874	34.668	3	3	Plateau	244030000	139880000	104140000	0	0	0	22758000	18130000	4628000	75866000	51225000	24641000	145400000	70529000	74873000	22226	1015	21045	137789;137790;137791;137792;137793;137794;137795	187023;187024;187025;187026;187027;187028;187029	187026			7	
HGFFVNPSDSVAVIAANIFSIPYFQQTGVR	0	Unmodified	3280.6669	0.66693255	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		1	2		99.704	91.52	3;4	5.7519E-67	51953	160513_QHF_FH_JSI11Kac_6	185.72	174.19			1.316	1.3878	22.823	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98378	1.1688	NaN	1	0	Median	1.8388	1.7225	6.2668	2	0	Median	NaN	NaN	NaN	0	0	Median	4016500000	1811500000	2205000000	0	0	0	2491300000	1298600000	1192600000	1525200000	512880000	1012300000	0	0	0	22227	1460	21046	137796;137797;137798	187030;187031;187032;187033;187034	187031			5	
HGFLILSR	0	Unmodified	941.54469	0.54468557	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		56.907	47.776	2	3.9122E-07	26214	160513_QHF_FH_JSI10Kac_6	143.11	88.558			0.83712	0.89494	7.579	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78523	0.94421	NaN	1	0	Median	0.89243	0.84824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	193270000	120770000	72502000	0	0	0	144320000	91922000	52403000	48945000	28845000	20100000	0	0	0	22228	2297	21047	137799;137800	187035;187036;187037	187037			3	
HGFNQQTLGFFMK	1	Unmodified	1553.7449	0.74491829	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.44		3	15						5	7	7	6	3	71.871	69.366	2;3	1.4111E-16	59919	160511_QHF_FH_JSI12i_3	131.43	113.62			1.3546	1.1691	93.845	22	19	Median	2.3861	1.9495	98.302	7	7	Median	1.8259	2.2131	99.994	7	7	Median	0.8583	0.79307	97.363	6	5	Median	0.44938	0.46375	29.256	2	0	Median	2547000000	1295000000	1252000000	260740000	95886000	164850000	626400000	329380000	297020000	994100000	478140000	515960000	665800000	391610000	274190000	22229	575	21048	137801;137802;137803;137804;137805;137806;137807;137808;137809;137810;137811;137812;137813;137814;137815;137816;137817;137818;137819;137820;137821;137822;137823	187038;187039;187040;187041;187042;187043;187044;187045;187046;187047;187048;187049;187050;187051;187052;187053;187054;187055;187056;187057;187058;187059;187060;187061;187062;187063;187064;187065;187066;187067	187065			30	
HGFSDNQK	1	Unmodified	931.41479	0.41479361	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	5.1011	2.1262	2	0.00067397	2521	160511_QHF_FH_JSI11i_2	100.45	88.258			1.0323	1.1046	54.412	6	2	Median	1.8179	1.5313	NaN	1	0	Median	1.718	2.0926	NaN	1	0	Median	0.74852	0.75191	70.779	2	1	Median	0.75514	0.8461	21.31	2	1	Median	2173900000	819700000	1354200000	437980000	99964000	338020000	654620000	172700000	481930000	762900000	364650000	398250000	318450000	182390000	136060000	22230	3793	21049	137824;137825;137826;137827;137828;137829	187068;187069;187070;187071;187072;187073;187074;187075	187073			8	
HGFSGIPITETGTMGSK	1	Unmodified	1718.8298	0.82977013	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	54.129	53.548	2;3	6.563E-07	46259	160511_QHF_FH_JSI11i_2	119.69	103.44			1.23	1.2534	66.283	5	5	Median	NaN	NaN	NaN	0	0	Median	3.166	3.9439	NaN	1	1	Median	1.3095	1.2305	22.09	2	2	Median	0.83941	0.90151	46.607	2	2	Median	277130000	112310000	164820000	12180000	0	12180000	10847000	2510600	8335900	147560000	55626000	91937000	106540000	54176000	52363000	22231	1182	21050	137830;137831;137832;137833;137834;137835;137836;137837	187076;187077;187078;187079;187080;187081;187082;187083	187080			8	
HGFSGIPITETGTMGSK	1	Oxidation (M)	1734.8247	0.82468476	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	44.834	44.596	3	0.041884	38080	160511_QHF_FH_JSI12i_3	31.883	27.849			0.43465	0.45331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43465	0.45331	NaN	1	1	Median	22068000	20156000	1912000	0	0	0	0	0	0	0	0	0	22068000	20156000	1912000	22232	1182	21050	137838	187084	187084			1	
HGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGK	1	Unmodified	2629.1865	0.18653159	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.6	0.49		2	3							2	3			40.492	39.137	3	1.0029E-32	34222	160511_QHF_FH_JSI9i_2	120.8	117.99			0.89898	0.89931	76.144	3	3	Plateau	2.1968	1.8707	26.304	2	2	Median	0.44861	0.5207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56479000	26010000	30470000	31948000	6546500	25401000	24532000	19463000	5068800	0	0	0	0	0	0	22233	2606	21051	137839;137840;137841;137842;137843	187085;187086;187087;187088;187089;187090	187089			6	
HGGPGPGGPEPELSPITEGSEAR	0	Unmodified	2227.0505	0.050538606	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	47.571	46.776	3	5.9707E-10	39820	160511_QHF_FH_JSI12i_3	96.718	92.45			0.89757	0.8674	22.997	7	3	Median	0.99549	0.8674	NaN	1	0	Median	0.89757	1.0956	NaN	1	0	Median	1.2449	1.2269	0.49097	2	1	Median	0.72512	0.76557	6.3346	3	2	Median	349710000	166910000	182800000	42267000	23522000	18745000	51766000	26524000	25243000	138420000	51142000	87277000	117260000	65723000	51539000	22234	3760	21052	137844;137845;137846;137847;137848;137849;137850	187091;187092;187093;187094;187095;187096;187097;187098;187099;187100;187101;187102	187102			12	
HGGPKDEER	1	Acetyl (K)	1065.4839	0.4839358	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		5.936	-3.5877	2	0.018827	1985	160513_QHF_FH_JSI11Kac_5	54.982	22.141			0.37016	0.36252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37016	0.36252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3685700	2477900	1207800	0	0	0	0	0	0	3685700	2477900	1207800	0	0	0	22235	769	21053	137851	187103	187103	376		1	
HGGSLGLGLAAMGTAR	0	Unmodified	1467.7616	0.76163099	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			54.647	53.727	3	0.060906	47426	160511_QHF_FH_JSI10i_2	23.33	16.449			0.96436	1.1779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96436	1.1779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38155000	15588000	22567000	0	0	0	38155000	15588000	22567000	0	0	0	0	0	0	22236	4272	21054	137852	187104	187104			1	
HGGSPQPLATTPLSQEPVNPPSEASPTR	0	Unmodified	2851.41	0.41004916	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	56.815	56.179	3	3.6361E-26	49767	160511_QHF_FH_JSI11i_3	132.69	127.48			1.0289	0.9673	24.045	3	0	Plateau	1.6582	1.4887	NaN	1	0	Median	0.81873	0.99789	NaN	1	0	Median	1.0289	0.9673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153750000	73007000	80741000	36368000	14819000	21549000	51277000	24964000	26313000	66102000	33224000	32878000	0	0	0	22237	5474	21055	137853;137854;137855;137856	187105;187106;187107;187108;187109;187110;187111;187112;187113	187105			9	
HGGTIPIVPTAEFQDR	0	Unmodified	1736.8846	0.8845829	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	61.739	60.837	2;3	1.369E-07	53688	160511_QHF_FH_JSI10i_2	167.3	149.83			0.82883	1.0182	15.281	5	3	Median	NaN	NaN	NaN	0	0	Median	0.82189	1.0182	NaN	1	1	Median	1.1664	1.186	9.942	2	1	Median	0.81013	0.8903	3.4764	2	1	Median	901930000	452720000	449210000	0	0	0	78449000	45205000	33245000	543720000	247970000	295750000	279750000	159540000	120210000	22238	762	21056	137857;137858;137859;137860;137861	187114;187115;187116;187117	187117			4	
HGGVIHIYVDK	1	Unmodified	1236.6615	0.66150624	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	3	1	1	1	43.496	34.292	3	0.00040788	18521	160513_QHF_FH_JSI10Kac_6	71.555	62.233			0.92769	0.80027	87.268	5	3	Median	0.90994	0.77073	5.3179	2	1	Median	1.1908	1.372	NaN	1	0	Median	0.39569	0.38091	NaN	1	1	Median	3.5668	3.9462	NaN	1	1	Median	62905000	39414000	23491000	16778000	9994400	6783600	14849000	6299400	8549300	27158000	22159000	4998700	4120800	961560	3159300	22239	2538	21057	137862;137863;137864;137865;137866;137867	187118;187119;187120;187121;187122;187123;187124	187123			7	
HGIEYQSK	1	Unmodified	960.46649	0.46649483	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	8.2737	7.863	2	0.0031886	5500	160511_QHF_FH_JSI11i_2	80.684	45.876			0.3963	0.41211	21.697	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47628	0.48044	NaN	1	1	Median	0.32976	0.35349	NaN	1	1	Median	97389000	70875000	26514000	0	0	0	0	0	0	57024000	40366000	16659000	40365000	30509000	9855300	22240	415	21058	137868;137869	187125;187126	187126			2	
HGIILNSEIATNGETSDTLNNVGYQGPTK	1	Unmodified	3042.4894	0.4894217	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.927	67.629	3	1.3433E-12	58530	160511_QHF_FH_JSI12i_3	82.089	77.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22241	2804	21059	137870	187127	187127			1	
HGILQFLHIYHAVK	1	Unmodified	1674.9358	0.93583061	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching			16	0									2	1	1			77.77	70.331	4	6.3149E-08	37830	160513_QHF_FH_JSI9Kac_6	112.51	101.56			0.95921	0.96098	13.428	2	0	Median	1.0186	0.87393	NaN	1	0	Median	0.90329	1.0567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132350000	60849000	71502000	62457000	29543000	32913000	69894000	31306000	38589000	0	0	0	0	0	0	22242	1622	21060	137871;137872	187128	187128			1	
HGINCFINR	0	Unmodified	1129.5451	0.54509627	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.8	0.4		1	4							2	3			29.718	28.441	2	0.00017564	23122	160511_QHF_FH_JSI9i_3	104.45	73.374			0.56337	0.68862	103.41	5	5	Median	1.4146	1.166	171.77	2	2	Median	0.56337	0.68862	78.776	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	286780000	142320000	144470000	130160000	57163000	72995000	156620000	85152000	71471000	0	0	0	0	0	0	22243	2090	21061	137873;137874;137875;137876;137877	187129;187130;187131;187132;187133	187131			5	
HGIPFALATSSGSASFDMK	1	Unmodified	1922.9196	0.91964777	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	74.347	74.129	2;3	9.877E-11	64405	160511_QHF_FH_JSI12i_3	131.69	117.79			1.7269	1.5782	110.18	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7269	1.5782	NaN	1	1	Median	0.8783	0.90059	148.94	2	2	Median	295740000	157620000	138120000	0	0	0	0	0	0	71496000	29660000	41836000	224250000	127960000	96284000	22244	2274	21062	137878;137879;137880;137881;137882	187134;187135;187136;187137;187138	187138			5	
HGIPNNQK	1	Unmodified	906.46716	0.46716353	1637	P48960;Q9UHX3	CD97;EMR2	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta;EGF-like module-containing mucin-like hormone receptor-like 2	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	5.0451	4.6624	2	0.0051116	2543	160511_QHF_FH_JSI11i_2	74.439	56.453			0.2692	0.28164	11.47	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2586	0.25969	NaN	1	1	Median	0.28024	0.30543	NaN	1	1	Median	156860000	108320000	48544000	0	0	0	0	0	0	118710000	80484000	38231000	38147000	27834000	10313000	22245	1637	21063	137883;137884	187139;187140	187140			2	
HGIPTAQWK	1	Unmodified	1036.5454	0.54541385	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.25		7	9						2	3	3	5	7	28.47	26.953	2	4.4485E-06	22646	160511_QHF_FH_JSI11i_3	119.27	85.478			0.94364	0.77217	160.32	15	10	Median	1.5594	1.2945	33.952	3	2	Median	2.073	2.5632	294.97	2	1	Median	1.0729	1.0131	74.342	4	3	Median	0.18545	0.19811	199.09	6	4	Median	2296600000	897450000	1399200000	155160000	66353000	88812000	259490000	107550000	151940000	1012300000	286260000	726070000	869650000	437290000	432350000	22246	1205	21064	137885;137886;137887;137888;137889;137890;137891;137892;137893;137894;137895;137896;137897;137898;137899;137900;137901;137902	187141;187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157;187158;187159	187141			19	
HGKPTDSTPATWK	2	Unmodified	1424.7048	0.70482762	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		17.65	17.65	3	0.027564	14725	160511_QHF_FH_JSI11i_3	38.511	32.079			2.6014	2.4133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6014	2.4133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15705000	3947600	11758000	0	0	0	0	0	0	15705000	3947600	11758000	0	0	0	22247	453	21065	137903;137904	187160;187161	187160			2	
HGKYMACCLLYR	1	Acetyl (K)	1612.7313	0.73125884	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		61.379	52.326	2;3	3.6634E-05	28400	160513_QHF_FH_JSI11Kac_6	98.048	87.291			0.3577	0.35075	222.84	3	1	Median	NaN	NaN	NaN	0	0	Median	13.414	15.857	NaN	1	1	Median	0.33969	0.33447	6.7195	2	0	Median	NaN	NaN	NaN	0	0	Median	64476000	47329000	17147000	0	0	0	9281400	3761800	5519600	55195000	43567000	11628000	0	0	0	22248	2073;2074;4359	21066	137905;137906;137907;137908	187162;187163;187164;187165;187166	187163	2159		5	
HGLEAISIMDSR	0	Unmodified	1327.6554	0.65543458	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	6.05		10	4						5	4	3	6	6	55.091	52.295	2;3	5.7588E-06	45336	160511_QHF_FH_JSI11i_2	145.46	114.38			0.79812	0.84992	57.563	17	14	Median	1.7723	1.5173	75.846	4	4	Median	0.79812	0.98633	52.938	3	2	Plateau	0.86082	0.84992	43.125	5	3	Median	0.65682	0.73374	49.62	5	5	Median	1153200000	537240000	615940000	204470000	71237000	133230000	316770000	149460000	167310000	352880000	172230000	180650000	279060000	144300000	134750000	22249	1283	21067	137909;137910;137911;137912;137913;137914;137915;137916;137917;137918;137919;137920;137921;137922;137923;137924;137925;137926;137927	187167;187168;187169;187170;187171;187172;187173;187174;187175;187176;187177;187178;187179;187180;187181;187182;187183;187184;187185;187186;187187	187179			21	
HGLEETAAK	1	Unmodified	954.47706	0.47705951	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	7.4796	7.0806	2	0.00011395	4769	160511_QHF_FH_JSI11i_2	110.41	77.05			3.3702	3.5221	29.168	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.2639	4.3288	NaN	1	1	Median	2.6638	2.8657	NaN	1	1	Median	142230000	43363000	98862000	0	0	0	0	0	0	85464000	23903000	61562000	56761000	19460000	37301000	22250	3602	21068	137928;137929	187188;187189	187189			2	
HGLEFYGYIK	1	Unmodified	1225.6132	0.61315906	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			65.436	57.268	2	0.0072083	31505	160513_QHF_FH_JSI10Kac_6	70.256	51.944			1.3506	1.5809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3506	1.5809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24494000	11137000	13357000	0	0	0	24494000	11137000	13357000	0	0	0	0	0	0	22251	438	21069	137930	187190	187190			1	
HGLEVIYMIEPIDEYCVQQLK	1	Unmodified	2576.2655	0.2654821	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4		2	3	2	95.32	90.425	3	2.9766E-23	89583	160511_QHF_FH_JSI10i_2	171.72	164.36			1.109	1.223	28.053	7	3	Median	NaN	NaN	NaN	0	0	Median	0.87886	1.0509	34.954	2	1	Median	1.1914	1.223	12.426	3	1	Median	0.82843	0.89973	46.212	2	1	Median	1527900000	760820000	767040000	0	0	0	301470000	182120000	119350000	749330000	322630000	426700000	477060000	256070000	220990000	22252	880	21070	137931;137932;137933;137934;137935;137936;137937	187191;187192;187193;187194;187195;187196;187197;187198	187196			8	
HGLINFGIYK	1	Unmodified	1160.6342	0.63422886	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.7	6.13			1						2	1		1	1	67.082	60.15	2	0.00037748	32590	160513_QHF_FH_JSI11Kac_6	106.36	83.337			0.99452	0.9205	45.368	3	2	Plateau	1.6997	1.3925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94149	0.9205	NaN	1	0	Median	2.115	2.2782	NaN	1	1	Median	95970000	43973000	51997000	40021000	20871000	19149000	0	0	0	40282000	17039000	23243000	15667000	6061800	9605600	22253	412	21071	137938;137939;137940	187199;187200;187201	187199			3	
HGLLLANAYIYVVQLPAK	1	Unmodified	1982.1353	0.13531827	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.96			3						14	5	4	3	5	92.127	85.331	2;3	1.2466E-167	47195	160513_QHF_FH_JSI10Kac_6	289.97	273.62			0.6639	0.54794	140.79	15	12	Median	0.6639	0.54794	185.73	5	4	Median	0.98401	1.13	154.69	4	2	Median	1.808	1.7012	93.649	2	2	Median	0.30768	0.31756	79.88	4	4	Median	2324000000	1168100000	1155800000	828180000	414510000	413660000	452720000	236180000	216550000	531550000	178760000	352790000	511510000	338690000	172820000	22254	1388	21072	137941;137942;137943;137944;137945;137946;137947;137948;137949;137950;137951;137952;137953;137954;137955;137956;137957	187202;187203;187204;187205;187206;187207;187208;187209;187210;187211;187212;187213;187214;187215;187216;187217;187218;187219	187217			18	
HGLLVPNNTTDQELQHIR	0	Unmodified	2084.0763	0.076299846	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.14		6	8						3	4	4	5	4	52.519	50.689	3;4	2.2781E-99	44440	160511_QHF_FH_JSI11i_3	264.03	250.57			0.89641	0.95499	56.802	16	9	Median	1.3061	1.1157	28.075	4	2	Median	0.8539	1.048	24.659	4	1	Median	0.90414	0.85437	61.529	5	3	Median	0.30179	0.30574	87.586	3	3	Median	2808000000	1496500000	1311600000	351820000	139510000	212310000	609780000	332200000	277580000	1118400000	544910000	573530000	728000000	479850000	248160000	22255	1881	21073	137958;137959;137960;137961;137962;137963;137964;137965;137966;137967;137968;137969;137970;137971;137972;137973;137974	187220;187221;187222;187223;187224;187225;187226;187227;187228;187229;187230;187231;187232;187233;187234;187235;187236;187237;187238;187239;187240;187241;187242;187243;187244;187245;187246	187221			26	
HGLPPSETIAIVEHINAK	1	Unmodified	1925.0371	0.037060793	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	66.005	65.858	3	0.00015478	56889	160511_QHF_FH_JSI12i_3	63.337	53.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22256	621	21074	137975;137976	187247;187248	187248			2	
HGLPSADAPSLK	1	Unmodified	1191.6248	0.62478638	5456	Q9UP95	SLC12A4	Solute carrier family 12 member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	32.187	31.302	2	0.0046915	26497	160511_QHF_FH_JSI11i_2	63.283	22.296			3.9349	4.3164	40.203	2	2	Median	NaN	NaN	NaN	0	0	Median	2.7251	3.2483	NaN	1	1	Median	5.6816	5.7356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49792000	20334000	29458000	0	0	0	15245000	4838700	10406000	23780000	4728000	19051000	10767000	10767000	0	22257	5456	21075	137977;137978;137979;137980	187249;187250;187251;187252;187253	187251			5	
HGLQSLGK	1	Unmodified	838.4661	0.4661009	5646;1628;2903	Q9Y520;P48634;Q5JSZ5	PRRC2C;PRRC2A;PRRC2B	Protein PRRC2C;Protein PRRC2A;Protein PRRC2B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	3	2	1	11.204	10.826	2	0.0027947	8699	160511_QHF_FH_JSI10i_2	84.743	40.929			5.8801	5.0676	180.6	7	7	Median	1.973	1.6766	156.43	2	2	Median	1.09	1.3366	296.64	2	2	Median	11.662	11.449	123.83	2	2	Median	9.4799	9.7274	NaN	1	1	Median	1066400000	229290000	837090000	177190000	54114000	123080000	286070000	104980000	181090000	298830000	40051000	258780000	304290000	30144000	274150000	22258	5646;1628;2903	21076	137981;137982;137983;137984;137985;137986;137987;137988	187254;187255;187256;187257;187258;187259;187260;187261	187259			8	
HGLQSLGKVGISR	1	Acetyl (K)	1392.7837	0.78374664	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									4		2		2	52.602	43.6	2;3	0.00014419	23991	160513_QHF_FH_JSI10Kac_6	90.759	58.153			0.28384	0.32104	368.21	2	2	Median	NaN	NaN	NaN	0	0	Median	3.6571	4.3381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.02203	0.023759	NaN	1	1	Median	30734000	8958100	21776000	0	0	0	23154000	1504700	21650000	0	0	0	7579500	7453400	126110	22259	5646	21077	137989;137990;137991;137992	187262;187263;187264;187265	187265	3516		4	
HGLTEADVGITK	1	Unmodified	1239.6459	0.64591575	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	32.521	31.526	2	7.6975E-06	27430	160511_QHF_FH_JSI9i_2	124.1	106.24			1.2385	1.1418	57.303	6	6	Median	1.0532	0.87785	NaN	1	1	Median	1.0946	1.3483	60.713	2	2	Median	1.5017	1.4851	NaN	1	1	Median	0.75953	0.83527	94.794	2	2	Median	232820000	113750000	119060000	25287000	8890100	16397000	72698000	35237000	37461000	65679000	29310000	36369000	69151000	40316000	28835000	22260	4202	21078	137993;137994;137995;137996;137997;137998	187266;187267;187268;187269;187270;187271;187272;187273	187269			8	
HGLVPFAFVR	0	Unmodified	1141.6396	0.63964859	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	71.206	70.468	2;3	0.00055535	58346	160511_QHF_FH_JSI9i_3	66.621	46.318			1.2835	1.1444	43.571	2	2	Median	1.02	0.84093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6151	1.5573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50025000	23603000	26422000	41654000	19747000	21908000	0	0	0	8370600	3856200	4514400	0	0	0	22261	2376	21079	137999;138000;138001;138002	187274;187275;187276;187277;187278	187277			5	
HGLYLPTR	0	Unmodified	955.52395	0.52395013	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.1		7	8						6	4	5	7	5	32.322	29.192	2	0.00017999	23906	160511_QHF_FH_JSI12i_3	136.33	116.41			1.3368	1.1893	105.02	21	17	Median	1.5951	1.3627	64.273	4	2	Median	1.0341	1.2778	54.75	5	3	Median	1.7242	1.7451	118.9	7	7	Median	0.24808	0.27471	114.88	5	5	Median	7576800000	3824200000	3752600000	637220000	217290000	419930000	1315500000	682440000	633030000	2807600000	1275100000	1532500000	2816600000	1649400000	1167200000	22262	1650	21080	138003;138004;138005;138006;138007;138008;138009;138010;138011;138012;138013;138014;138015;138016;138017;138018;138019;138020;138021;138022;138023	187279;187280;187281;187282;187283;187284;187285;187286;187287;187288;187289;187290;187291;187292;187293;187294;187295;187296;187297;187298;187299;187300;187301;187302;187303;187304	187301			26	
HGNQYIQVNEPWK	1	Unmodified	1611.7794	0.77938954	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.5	6.06		3							1			2	2	48.913	48.392	2;3	0.00046561	41886	160511_QHF_FH_JSI11i_2	91.549	82.227			1.3154	1.3199	17.101	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3154	1.3199	17.101	2	2	Median	NaN	NaN	NaN	0	0	Median	129860000	63728000	66131000	0	0	0	0	0	0	129860000	63728000	66131000	0	0	0	22263	1872	21081	138024;138025;138026;138027	187305;187306;187307;187308;187309	187308			5	
HGNYFAYVQMFNSR	0	Unmodified	1732.778	0.77800934	4783	Q9H8H0	NOL11	Nucleolar protein 11	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			76.375	70.125	2;3	9.8006E-05	38279	160513_QHF_FH_JSI10Kac_6	84.753	80.285			1.0144	1.2082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0144	1.2082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78758000	34386000	44371000	0	0	0	78758000	34386000	44371000	0	0	0	0	0	0	22264	4783	21082	138028;138029;138030	187310;187311;187312;187313	187311			4	
HGPLALVDK	1	Unmodified	948.53927	0.53926584	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	2	1	32.27	31.496	2	2.693E-05	26737	160511_QHF_FH_JSI11i_2	103.83	70.036			2.6404	2.8001	129.87	6	4	Median	3.8328	3.3735	NaN	1	1	Median	0.82557	1.0016	122.31	2	1	Median	2.0836	2.0126	69.778	2	1	Median	18.936	21.344	NaN	1	1	Median	907340000	368880000	538450000	100130000	28679000	71451000	281050000	143570000	137480000	461610000	194090000	267530000	64545000	2548600	61996000	22265	2242	21083	138031;138032;138033;138034;138035;138036	187314;187315;187316;187317;187318;187319;187320	187318			7	
HGSASFVSLLK	1	Unmodified	1144.6241	0.6240581	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	53.68	52.786	2	2.3276E-05	44868	160511_QHF_FH_JSI12i_3	105.52	85.527			0.69123	0.74894	112.67	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4305	1.6613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33402	0.33763	NaN	1	1	Median	707340000	552100000	155250000	0	0	0	45254000	19848000	25406000	0	0	0	662090000	532250000	129840000	22266	5113	21084	138037;138038	187321;187322	187322			2	
HGSGPNIILTGDSSPGFSK	1	Unmodified	1869.9221	0.92209062	2848	Q53ET0	CRTC2	CREB-regulated transcription coactivator 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		52.996	52.996	3	0.00011582	46909	160511_QHF_FH_JSI11i_3	70.986	64.823			1.0965	1.0479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.0479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26385000	9409100	16976000	0	0	0	0	0	0	26385000	9409100	16976000	0	0	0	22267	2848	21085	138039	187323	187323			1	
HGSLGFLPR	0	Unmodified	982.53485	0.53484916	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.68		10	13						2	8	6	7	4	42.121	40.429	2;3	3.3343E-11	34560	160511_QHF_FH_JSI9i_2	157.34	96.583			0.86507	0.96724	92.114	24	18	Median	1.3461	1.155	103.45	7	4	Median	0.67981	0.8269	121.98	6	5	Median	0.86575	0.88413	67.741	7	6	Median	0.49597	0.55805	67.617	4	3	Median	10909000000	5227900000	5681000000	3154200000	1143200000	2011000000	3417400000	1827900000	1589500000	3082300000	1498900000	1583400000	1255000000	757860000	497120000	22268	1484	21086	138040;138041;138042;138043;138044;138045;138046;138047;138048;138049;138050;138051;138052;138053;138054;138055;138056;138057;138058;138059;138060;138061;138062;138063;138064	187324;187325;187326;187327;187328;187329;187330;187331;187332;187333;187334;187335;187336;187337;187338;187339;187340;187341;187342;187343;187344;187345;187346;187347;187348;187349;187350;187351;187352;187353;187354;187355;187356;187357;187358;187359;187360;187361	187349			38	
HGSNIEAMSK	1	Oxidation (M)	1088.4921	0.49205765	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	6.8356	6.4084	2	0.0035403	2715	160511_QHF_FH_JSI11i_2	60.398	46.241			0.33962	0.35722	77.148	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61378	0.61638	NaN	1	0	Median	0.18792	0.20702	NaN	1	1	Median	155220000	82437000	72779000	28080000	0	28080000	0	0	0	68585000	35660000	32925000	58551000	46777000	11774000	22269	4496	21087	138065;138066;138067	187362;187363;187364	187364		2483	3	
HGSNIEAMSK	1	Unmodified	1072.4971	0.49714303	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	10.065	9.6442	2	7.3324E-06	7141	160511_QHF_FH_JSI11i_2	116.55	94.415			0.38693	0.43271	215.71	5	5	Median	0.38693	0.33117	NaN	1	1	Median	0.35483	0.43271	NaN	1	1	Median	1.2952	1.3021	316.33	2	2	Median	12.186	13.647	NaN	1	1	Median	1051600000	470030000	581570000	119230000	69255000	49979000	265460000	148060000	117390000	549130000	243410000	305720000	117780000	9297600	108480000	22270	4496	21087	138068;138069;138070;138071;138072	187365;187366;187367;187368;187369	187368			5	
HGSNIEAMSKLK	2	Acetyl (K);Oxidation (M)	1371.6816	0.68164933	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	1	0	1	1		By MS/MS		By MS/MS	15.3	0.471								2	1		1		2	28.142	19.202	3	0.02371	10839	160513_QHF_FH_JSI10Kac_5	37.594	27.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22271	4496	21088	138073;138074;138075	187370;187371;187372	187371	3170	2483	3	
HGSNIEAMSKLK	2	Acetyl (K)	1355.6867	0.68673471	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	1	0	0	1	By MS/MS			By MS/MS	16	0									2	1			1	44.914	35.558	2;3	0.00017468	18605	160513_QHF_FH_JSI12Kac_6	94.767	74.247			3.3446	2.8405	NaN	1	1	Median	3.3446	2.8405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23341000	9789600	13551000	18448000	4896700	13551000	0	0	0	0	0	0	4892900	4892900	0	22272	4496	21088	138076;138077	187373;187374	187374	3170		2	
HGSYEDAVHSGALND	0	Unmodified	1570.6648	0.6648133	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	4	2	28.734	27.89	2;3	2.8241E-21	23311	160511_QHF_FH_JSI11i_2	214.26	213.43			0.75456	0.92836	33.552	9	1	Median	1.8212	1.5525	4.4055	2	0	Median	0.74681	0.92836	28.579	3	1	Plateau	0.98959	0.99689	4.5424	2	0	Median	0.67015	0.7355	4.0219	2	0	Median	2093000000	982530000	1110500000	508290000	186100000	322190000	653510000	331770000	321740000	491540000	211720000	279820000	439650000	252940000	186720000	22273	1132	21089	138078;138079;138080;138081;138082;138083;138084;138085;138086;138087;138088	187375;187376;187377;187378;187379;187380;187381;187382;187383;187384;187385;187386;187387;187388;187389;187390;187391;187392;187393;187394;187395;187396;187397;187398;187399	187388			25	
HGTALQR	0	Unmodified	781.41949	0.41948505	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			4.6113	4.2043	2	0.019238	2182	160511_QHF_FH_JSI10i_2	61.494	35.016			0.14512	0.17601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14512	0.17601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141400000	115670000	25726000	0	0	0	141400000	115670000	25726000	0	0	0	0	0	0	22274	1201	21090	138089	187400	187400			1	
HGVESTLER	0	Unmodified	1026.5094	0.50942227	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.44		6	1					2	2	2	2	5	2	12.49	9.0434	2	7.2238E-12	7863	160511_QHF_FH_JSI11i_2	178.94	106.8			0.91426	0.89969	58.102	11	7	Median	1.1654	0.98186	12.36	2	1	Median	1.0064	1.2396	71.155	2	2	Median	0.91426	0.90467	38.578	5	3	Median	0.29568	0.32061	0.86186	2	1	Median	3305900000	1734200000	1571700000	306490000	119370000	187130000	1016500000	509950000	506580000	1596100000	823390000	772720000	386730000	281510000	105220000	22275	2217	21091	138090;138091;138092;138093;138094;138095;138096;138097;138098;138099;138100	187401;187402;187403;187404;187405;187406;187407;187408;187409;187410	187406			10	
HGVFLVR	0	Unmodified	826.48136	0.48135703	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		33.598	28.859	2	0.0051901	16264	160513_QHF_FH_JSI10Kac_6	95.378	70.874			0.85431	0.94331	65.946	4	2	Median	0.67167	0.56375	NaN	1	0	Median	0.81023	0.94331	40.911	2	1	Median	2.6601	2.464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	149690000	70982000	78706000	5094100	2921300	2172800	100110000	50238000	49873000	44483000	17823000	26660000	0	0	0	22276	1582	21092	138101;138102;138103;138104	187411;187412;187413;187414	187414			4	
HGVIVAADSR	0	Unmodified	1023.5461	0.54614213	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.42		7	5						6	3	4	5	6	13.664	11.615	2	8.5098E-07	8909	160511_QHF_FH_JSI12i_3	123.72	101.23			0.95724	1.0658	153.31	16	16	Median	4.6859	3.9116	80.619	2	2	Median	0.33364	0.38397	153.75	4	4	Median	1.0321	1.0232	200.06	4	4	Median	0.85357	0.92728	147.02	6	6	Median	3654000000	1743300000	1910700000	274080000	73619000	200460000	538600000	316120000	222490000	1631100000	785790000	845270000	1210200000	567760000	642470000	22277	1303	21093	138105;138106;138107;138108;138109;138110;138111;138112;138113;138114;138115;138116;138117;138118;138119;138120;138121;138122	187415;187416;187417;187418;187419;187420;187421;187422;187423;187424;187425;187426;187427;187428;187429;187430;187431;187432	187428			18	
HGVIYLITK	1	Unmodified	1042.6175	0.61751616	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	56.483	47.218	2	0.00836	24959	160513_QHF_FH_JSI9Kac_6	72.23	52.453			3.095	3.0557	171.89	5	5	Median	5.7751	4.8475	NaN	1	1	Median	1.1652	1.3552	217.29	2	2	Median	0.7021	0.67936	212.65	2	2	Median	NaN	NaN	NaN	0	0	Median	87604000	45157000	42447000	16855000	2985100	13870000	30643000	13819000	16824000	30736000	18984000	11752000	9368700	9368700	0	22278	1807	21094	138123;138124;138125;138126;138127;138128	187433;187434;187435;187436;187437;187438	187435			6	
HGVPISVTGIAQVK	1	Unmodified	1404.8089	0.80889876	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.069	54.828	3	0.00086737	46991	160511_QHF_FH_JSI12i_3	63.76	54.939			0.093956	0.097003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.093956	0.097003	NaN	1	1	Median	46652000	36603000	10050000	0	0	0	0	0	0	0	0	0	46652000	36603000	10050000	22279	590	21095	138129	187439	187439			1	
HGVVPLATYMR	0	Oxidation (M)	1258.6492	0.64922699	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1		2	1	3	36.423	34.323	2;3	0.00012803	29060	160511_QHF_FH_JSI12i_3	89.698	74.438			0.79336	0.9193	52.697	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79336	0.9193	11.812	2	0	Median	1.0689	1.0124	NaN	1	0	Median	0.33672	0.34573	63.78	3	0	Plateau	470210000	343550000	126660000	0	0	0	121410000	71444000	49964000	83909000	59089000	24821000	264890000	213020000	51870000	22280	1591	21096	138130;138131;138132;138133;138134;138135	187440;187441;187442;187443;187444;187445;187446;187447	187445		1257	8	
HGVVPLATYMR	0	Unmodified	1242.6543	0.65431237	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.76		10	15						8	8	9	9	7	50.934	48.46	2;3	2.5953E-18	41799	160511_QHF_FH_JSI11i_2	164.68	153.53			0.81399	0.8528	96.104	31	27	Median	1.2649	1.0709	75.915	7	6	Median	0.77612	0.93667	96.356	9	8	Median	0.67279	0.68353	111.45	8	7	Median	0.55265	0.60924	108.18	7	6	Median	17670000000	8524300000	9146100000	2748500000	1000800000	1747600000	4617400000	2203800000	2413600000	5910300000	2867700000	3042600000	4394300000	2452000000	1942300000	22281	1591	21096	138136;138137;138138;138139;138140;138141;138142;138143;138144;138145;138146;138147;138148;138149;138150;138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161;138162;138163;138164;138165;138166;138167;138168	187448;187449;187450;187451;187452;187453;187454;187455;187456;187457;187458;187459;187460;187461;187462;187463;187464;187465;187466;187467;187468;187469;187470;187471;187472;187473;187474;187475;187476;187477;187478;187479;187480;187481;187482;187483;187484;187485;187486;187487;187488;187489;187490	187470			43	
HGVYNPNK	1	Unmodified	927.45626	0.45626449	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	3	4	4	3	6.6725	4.2983	2	0.00023037	3666	160511_QHF_FH_JSI11i_2	118.01	68.652			0.84102	0.8512	84.13	14	6	Median	1.4591	1.23	69.591	3	1	Median	0.66608	0.79176	81.033	4	2	Median	0.84102	0.8512	103.66	4	2	Median	0.51326	0.51527	93.844	3	1	Median	15507000000	8111900000	7395400000	914470000	318230000	596240000	2053800000	929360000	1124500000	7110300000	3820400000	3289900000	5428700000	3043800000	2384800000	22282	1504	21097	138169;138170;138171;138172;138173;138174;138175;138176;138177;138178;138179;138180;138181;138182	187491;187492;187493;187494;187495;187496;187497;187498;187499;187500;187501;187502;187503;187504;187505;187506;187507;187508;187509;187510;187511;187512;187513;187514;187515;187516;187517	187503			27	
HGYAPSDLPVK	1	Unmodified	1182.6033	0.60332266	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	33.627	32.803	2	0.0010576	27727	160511_QHF_FH_JSI11i_2	77.677	60.438			1.0379	0.86198	51.488	5	3	Median	1.0379	0.86198	NaN	1	0	Median	1.0936	1.3558	NaN	1	1	Median	0.73724	0.72927	89.42	2	2	Median	0.74677	0.83298	NaN	1	0	Median	184890000	98038000	86851000	25457000	11559000	13898000	30634000	14104000	16530000	94616000	53986000	40630000	34182000	18389000	15794000	22283	5674	21098	138183;138184;138185;138186;138187	187518;187519;187520;187521;187522	187520			4	
HGYEKPTPIQTQAIPAIMSGR	1	Unmodified	2294.1841	0.18413574	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.889	62.388	3	0.012866	51255	160511_QHF_FH_JSI9i_3	35.036	30.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7844400	0	7844400	7844400	0	7844400	0	0	0	0	0	0	0	0	0	22284	3216	21099	138188	187523	187523			1	
HGYIKGIVK	2	Acetyl (K)	1055.6128	0.61276513	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		41.72	32.776	2	0.0001915	18171	160513_QHF_FH_JSI10Kac_6	95.909	45.206			0.23944	0.26171	1.8253	2	2	Median	NaN	NaN	NaN	0	0	Median	0.21529	0.25835	NaN	1	1	Median	0.2663	0.26511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60050000	42724000	17326000	0	0	0	22474000	6362300	16112000	37576000	36362000	1214300	0	0	0	22285	2039	21100	138189;138190;138191	187524;187525;187526	187525	2092;2093		3	
HGYNMEQALGMLFWHK	1	Unmodified	1960.9076	0.9076433	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		88.593	79.605	3	2.6152E-05	44052	160513_QHF_FH_JSI9Kac_6	92.575	83.574			1.8886	1.6977	4.1398	2	1	Median	1.9114	1.6487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8661	1.7481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	311120000	115900000	195220000	112490000	33857000	78630000	0	0	0	198630000	82040000	116590000	0	0	0	22286	5371	21101	138192;138193	187527;187528;187529	187528			3	
HGYNVEQALGMLFWHK	1	Unmodified	1928.9356	0.93557261	5216	Q9P2K3	RCOR3	REST corepressor 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.955	82.236	3	0.0018659	46395	160513_QHF_FH_JSI10Kac_6	62.813	53.408			0.33086	0.38166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33086	0.38166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115220000	90318000	24904000	0	0	0	115220000	90318000	24904000	0	0	0	0	0	0	22287	5216	21102	138194	187530	187530			1	
HHAKYLNA	1	Acetyl (K)	994.49846	0.49846366	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		24.478	15.375	2	0.056021	9636	160513_QHF_FH_JSI11Kac_6	53.163	49.417			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6806800	6806800	0	0	0	0	0	0	0	6806800	6806800	0	0	0	0	22288	979	21103	138195	187531	187531			1	
HHCPNTPIILVGTK	1	Unmodified	1585.8399	0.83988131	2045	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	0	0	0				By MS/MS	6.25	5.63			3						1				4	41.624	41.405	3	0.0002545	34508	160511_QHF_FH_JSI12i_3	79.614	74.723			5.9339	5.928	111.48	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.9339	5.928	111.48	3	3	Plateau	135380000	44949000	90434000	0	0	0	0	0	0	0	0	0	135380000	44949000	90434000	22289	2045	21104	138196;138197;138198;138199	187532;187533;187534;187535;187536	187532			5	
HHGPQTLYLPVTLSSIPVFQR	0	Unmodified	2389.2906	0.29064972	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			86.735	81.016	3	1.036E-07	45576	160513_QHF_FH_JSI10Kac_6	128.66	112.77			2.117	2.4727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.117	2.4727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87455000	19841000	67614000	0	0	0	87455000	19841000	67614000	0	0	0	0	0	0	22290	2569	21105	138200;138201;138202	187537;187538;187539	187539			3	
HHIETGGGQLPAK	1	Unmodified	1343.6946	0.69459728	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	14.133	14.206	3	0.00012625	11036	160511_QHF_FH_JSI12i_3	87.641	78.446			0.93133	0.98383	74.303	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93133	0.98383	74.303	2	2	Median	138670000	63781000	74889000	0	0	0	0	0	0	0	0	0	138670000	63781000	74889000	22291	3860	21106	138203;138204;138205	187540;187541;187542	187542			3	
HHLQIPIHFPK	1	Unmodified	1365.767	0.76697436	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.468	67.172	4	0.029531	58118	160511_QHF_FH_JSI12i_3	31.185	22.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15810000	0	15810000	0	0	0	0	0	0	0	0	0	15810000	0	15810000	22292	5526	21107	138206	187543	187543			1	
HHLTLLLK	1	Unmodified	973.60729	0.60728582	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	43.077	42.175	3	0.0014297	36328	160511_QHF_FH_JSI9i_3	65.038	40.883			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22293	5316	21108	138207;138208	187544;187545	187544			2	
HHPQVLSMK	1	Unmodified	1075.5597	0.5596837	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0				By MS/MS	3	0			3										3	15.481	15.544	3	5.6398E-05	12574	160511_QHF_FH_JSI12i_3	90.906	78.29			11.295	11.535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11.295	11.535	NaN	1	1	Median	251260000	18499000	232760000	0	0	0	0	0	0	0	0	0	251260000	18499000	232760000	22294	1381	21109	138209;138210;138211	187546;187547;187548	187548			3	
HHSGGEKPFQAQK	2	Acetyl (K)	1491.7219	0.72187466	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	28.141	19.868	3	0.0020694	9844	160513_QHF_FH_JSI12Kac_6	55.261	43.342			1.1212	1.1604	47.656	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83498	0.82846	NaN	1	0	Median	1.5055	1.6254	NaN	1	0	Median	10075000	6823700	3251000	0	0	0	2381200	2381200	0	4087000	2623800	1463300	3606500	1818800	1787700	22295	4288	21110	138212;138213;138214;138215	187549;187550;187551;187552	187550	3104		4	
HHSLGGQYGVQGFPTIK	1	Unmodified	1824.9271	0.92711641	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.77		1	15						3	3	4	3	9	57.016	55.306	3;4	6.6654E-17	46406	160511_QHF_FH_JSI12i_3	118.5	109.22			1.0742	1.1697	73.246	16	6	Median	0.66774	0.5364	24.86	3	1	Median	1.4028	1.6788	36.872	3	1	Plateau	1.7217	1.632	52.362	3	1	Median	1.9543	2.0848	79.544	7	3	Median	1732400000	605630000	1126700000	94833000	58192000	36641000	171690000	83911000	87783000	395390000	134830000	260560000	1070400000	328700000	741740000	22296	2628	21111	138216;138217;138218;138219;138220;138221;138222;138223;138224;138225;138226;138227;138228;138229;138230;138231;138232;138233;138234	187553;187554;187555;187556;187557;187558;187559;187560;187561;187562;187563;187564;187565;187566;187567;187568;187569;187570;187571;187572;187573;187574;187575;187576;187577;187578;187579	187576			26	
HHVLGTITTDK	1	Unmodified	1220.6513	0.65133548	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	19.986	19.995	3	0.013642	17007	160511_QHF_FH_JSI11i_3	41.109	32.155			3.088	2.9338	84.58	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.088	2.9338	NaN	1	1	Median	3.042	3.0698	119.56	2	2	Median	139180000	46645000	92534000	0	0	0	0	0	0	24971000	6167900	18803000	114210000	40477000	73731000	22297	2638;2895	21112	138235;138236;138237	187580;187581;187582	187580			3	
HIADLAGNPDLILPVPAFNVINGGSHAGNK	1	Unmodified	3020.5832	0.58320292	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	101.04	101.04	3;4	5.518E-32	90042	160511_QHF_FH_JSI11i_3	131.2	124.77			0.85752	0.81957	12.255	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85752	0.81957	5.042	2	0	Median	0.88134	0.89968	18.39	2	0	Median	1237400000	650910000	586520000	0	0	0	0	0	0	618420000	333520000	284900000	619010000	317390000	301620000	22298	1044	21113	138238;138239;138240;138241	187583;187584;187585;187586	187583			4	
HIADLAGNSEVILPVPAFNVINGGSHAGNK	1	Unmodified	3010.5625	0.56246748	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	4.94	1	15	26						8	10	14	13	13	96.687	95.391	3;4	1.0957E-71	44862	160513_QHF_FH_JSI10Kac_6	192.55	163.2			0.84465	0.85705	124.33	41	33	Median	2.1255	1.7735	101.31	8	6	Median	0.57983	0.70557	75.873	11	7	Median	0.59556	0.59328	145.28	11	11	Median	0.95865	1.0293	162.59	11	9	Median	21654000000	10896000000	10758000000	1379800000	538590000	841250000	3106800000	1529100000	1577700000	9978100000	5569400000	4408700000	7188800000	3258600000	3930200000	22299	854	21114	138242;138243;138244;138245;138246;138247;138248;138249;138250;138251;138252;138253;138254;138255;138256;138257;138258;138259;138260;138261;138262;138263;138264;138265;138266;138267;138268;138269;138270;138271;138272;138273;138274;138275;138276;138277;138278;138279;138280;138281;138282;138283;138284;138285;138286;138287;138288;138289;138290;138291	187587;187588;187589;187590;187591;187592;187593;187594;187595;187596;187597;187598;187599;187600;187601;187602;187603;187604;187605;187606;187607;187608;187609;187610;187611;187612;187613;187614;187615;187616;187617;187618;187619;187620;187621;187622;187623;187624;187625;187626;187627;187628;187629;187630;187631;187632;187633;187634;187635;187636;187637;187638;187639;187640;187641;187642;187643;187644;187645;187646;187647;187648;187649;187650;187651;187652;187653;187654;187655;187656;187657;187658;187659;187660;187661;187662;187663;187664;187665;187666;187667;187668;187669;187670;187671;187672;187673;187674;187675;187676;187677;187678;187679;187680;187681;187682;187683;187684;187685;187686;187687;187688;187689;187690;187691;187692;187693;187694;187695;187696;187697;187698;187699;187700;187701;187702;187703;187704;187705;187706;187707;187708;187709;187710;187711;187712;187713	187713			127	
HIAEDSDR	0	Unmodified	941.42027	0.42027292	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	4.775	3.3678	2	6.9647E-16	2206	160511_QHF_FH_JSI11i_2	183.26	120.54		+	2.3128	2.258	175.95	9	9	Median	1.2977	1.1253	266.63	2	2	Median	1.0115	1.2267	273.62	2	2	Median	2.3385	2.258	207.07	3	3	Median	0.96333	1.0722	125.17	2	2	Median	1736500000	1007100000	729440000	244370000	123950000	120410000	401070000	247640000	153430000	623230000	364760000	258470000	467850000	270720000	197130000	22300	73;886	21115	138292;138293;138294;138295;138296;138297;138298;138299;138300	187714;187715;187716;187717;187718;187719;187720;187721;187722	187718			9	
HIAEDSDRK	1	Unmodified	1069.5152	0.51523593	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1		2	5	2	3.9017	2.7689	2;3	1.1197E-06	2191	160511_QHF_FH_JSI11i_2	118.67	86.451		+	0.40469	0.49499	298.9	9	7	Median	NaN	NaN	NaN	0	0	Median	0.33935	0.41586	24.636	2	2	Median	0.90759	0.90197	258.58	5	3	Median	4.2563	4.2764	624.05	2	2	Median	652520000	360090000	292430000	0	0	0	227850000	154530000	73315000	346510000	165850000	180670000	78155000	39711000	38444000	22301	73;886	21116	138301;138302;138303;138304;138305;138306;138307;138308;138309	187723;187724;187725;187726;187727;187728;187729;187730;187731;187732	187728			10	
HIAEEADR	0	Unmodified	939.44101	0.44100836	2069;858	P06753;P67936	TPM3;TPM4	Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.21	1	5						3		1	1	4	3	6.0907	2.7394	2	1.3555E-09	3460	160511_QHF_FH_JSI12i_2	155.75	111.14			0.23725	0.25078	208.57	9	5	Median	0.026295	0.02282	NaN	1	0	Median	0.053344	0.066476	NaN	1	0	Median	0.31381	0.30674	238.59	4	3	Median	0.0393	0.043106	210.84	3	2	Plateau	1942400000	1397300000	545060000	271190000	262930000	8255400	388510000	364710000	23801000	1026200000	528360000	497800000	256530000	241320000	15212000	22302	858;2069	21117	138310;138311;138312;138313;138314;138315;138316;138317;138318	187733;187734;187735;187736;187737;187738;187739;187740;187741	187734			9	
HIAEEADRK	1	Unmodified	1067.536	0.53597137	2069;858	P06753;P67936	TPM3;TPM4	Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	5	3	5.4383	5.2336	2;3	2.5422E-09	3005	160511_QHF_FH_JSI11i_3	160.59	119.14			0.30162	0.30641	127.73	11	11	Median	0.97251	0.84536	NaN	1	1	Median	0.73349	0.90255	170.86	2	2	Median	0.30162	0.30641	155.69	5	5	Median	0.17318	0.17593	94	3	3	Median	4047700000	2787000000	1260700000	280570000	157040000	123530000	789210000	452740000	336470000	1629300000	1083000000	546360000	1348600000	1094200000	254380000	22303	858;2069	21118	138319;138320;138321;138322;138323;138324;138325;138326;138327;138328;138329	187742;187743;187744;187745;187746;187747;187748;187749;187750;187751;187752	187743			11	
HIAEEADRKYEEVAR	1	Acetyl (K)	1856.9017	0.90168952	2069;858	P06753;P67936	TPM3;TPM4	Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain	no	no	1	0	0	2			By MS/MS		16	0									1			1		48.675	38.974	3	0.047334	21136	160513_QHF_FH_JSI11Kac_6	47.621	36.516			0.11074	0.11155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11074	0.11155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7583100	7406500	176620	0	0	0	0	0	0	7583100	7406500	176620	0	0	0	22304	858;2069	21119	138330	187753	187753			1	
HIAELIFYMEELR	0	Unmodified	1662.844	0.84396364	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			93.663	87.942	2;3	0.00017891	50512	160513_QHF_FH_JSI10Kac_6	66.989	54.111			0.22739	0.27135	92.646	2	2	Median	NaN	NaN	NaN	0	0	Median	0.22739	0.27135	92.646	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56444000	46677000	9766500	0	0	0	56444000	46677000	9766500	0	0	0	0	0	0	22305	5507	21120	138331;138332	187754;187755	187755			2	
HIAELNPYVHVTSSSVPFNETTDLSFLDK	1	Unmodified	3259.6037	0.60372317	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.308	98.327	4	0.044009	85149	160511_QHF_FH_JSI12i_3	15.28	9.6196			0.91178	0.97977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91178	0.97977	NaN	1	1	Median	19496000	14415000	5080900	0	0	0	0	0	0	0	0	0	19496000	14415000	5080900	22306	5	21121	138333	187756	187756			1	
HIAEVSQEVTR	0	Unmodified	1267.6521	0.65206377	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	3	1	22.622	21.899	2;3	0.00041373	18250	160511_QHF_FH_JSI11i_2	74.53	55.785			0.57851	0.56989	156.79	7	7	Median	6.6596	5.6292	NaN	1	1	Median	1.0434	1.2764	179.88	2	2	Median	0.57851	0.56989	182.76	3	3	Median	0.24412	0.2758	NaN	1	1	Median	421700000	246500000	175200000	29345000	1021400	28324000	149180000	101740000	47436000	208570000	118540000	90026000	34613000	25196000	9416500	22307	1962	21122	138334;138335;138336;138337;138338;138339;138340;138341	187757;187758;187759;187760;187761;187762;187763;187764	187761			8	
HIAFSGNK	1	Unmodified	872.45045	0.45045083	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	12.434	12.121	2	0.00060564	9609	160511_QHF_FH_JSI10i_3	102.71	67.608			9.2467	9.2594	66.074	3	1	Plateau	3.1264	2.5533	NaN	1	0	Median	3.2949	3.7677	NaN	1	0	Median	9.7189	9.2594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	494030000	338020000	156020000	22186000	4487400	17699000	35232000	7494900	27737000	218250000	107670000	110580000	218370000	218370000	0	22308	4543	21123	138342;138343;138344;138345;138346	187765;187766;187767;187768	187767			4	
HIAFTPESQR	0	Unmodified	1184.5938	0.5938206	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		24.359	24.359	2	0.01111	20725	160511_QHF_FH_JSI11i_3	47.198	16.628			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22309	2887	21124	138347	187769	187769			1	
HIAVFPCK	1	Unmodified	970.50586	0.50585722	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	34.025	33.359	2	0.00043077	28182	160511_QHF_FH_JSI12i_3	129.16	108.88			1.0374	1.2778	218.99	7	7	Median	2.8314	2.4198	152.79	2	2	Median	0.5064	0.60041	106.82	2	2	Median	23.693	21.613	NaN	1	1	Median	1.3861	1.4075	405.4	2	2	Median	577190000	233690000	343490000	132100000	23059000	109040000	168350000	101620000	66730000	71054000	4927700	66127000	205690000	104090000	101600000	22310	454	21125	138348;138349;138350;138351;138352;138353;138354	187770;187771;187772;187773;187774;187775;187776	187776			7	
HIAVLQAEVYGAR	0	Unmodified	1425.7728	0.7728476	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.411	51.176	2	0.0020465	43915	160511_QHF_FH_JSI12i_3	69.979	47.893			0.47566	0.50906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47566	0.50906	NaN	1	1	Median	20455000	15677000	4778100	0	0	0	0	0	0	0	0	0	20455000	15677000	4778100	22311	4870	21126	138355	187777	187777			1	
HIAVVLEEIPK	1	Unmodified	1246.7285	0.72852317	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.831	64.54	3	0.016284	55728	160511_QHF_FH_JSI12i_3	33.89	21.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22312	104	21127	138356	187778	187778			1	
HIAWLAEQAK	1	Unmodified	1165.6244	0.62439245	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	45.339	44.618	2	1.5219E-05	38379	160511_QHF_FH_JSI12i_3	112.11	89.065			2.8179	2.7789	153.11	4	2	Median	NaN	NaN	NaN	0	0	Median	5.0504	5.9217	NaN	1	1	Median	2.511	2.3885	NaN	1	0	Median	0.76396	0.77107	202.71	2	1	Median	250500000	153260000	97247000	0	0	0	41425000	30139000	11286000	36942000	11581000	25361000	172140000	111540000	60601000	22313	2407	21128	138357;138358;138359;138360;138361	187779;187780;187781;187782;187783	187783			5	
HIDFSLR	0	Unmodified	886.4661	0.4661009	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.09	4.52		17	11						4	7	6	9	10	43.811	41.88	2;3	9.6147E-10	35791	160511_QHF_FH_JSI11i_2	168.74	78.839			0.29107	0.26924	250.07	25	24	Median	9.1177	7.7831	228.54	5	4	Median	0.19415	0.23966	260.95	5	5	Median	0.17017	0.17789	252.71	7	7	Median	0.2373	0.25501	282.62	8	8	Median	11432000000	5024500000	6407100000	1300000000	407660000	892320000	2067900000	1021400000	1046500000	4391700000	2042100000	2349600000	3672100000	1553300000	2118800000	22314	1593	21129	138362;138363;138364;138365;138366;138367;138368;138369;138370;138371;138372;138373;138374;138375;138376;138377;138378;138379;138380;138381;138382;138383;138384;138385;138386;138387;138388;138389;138390;138391;138392;138393	187784;187785;187786;187787;187788;187789;187790;187791;187792;187793;187794;187795;187796;187797;187798;187799;187800;187801;187802;187803;187804;187805;187806;187807;187808;187809;187810;187811;187812;187813;187814;187815;187816;187817;187818;187819;187820;187821;187822;187823	187805			40	
HIDMVEGDEGR	0	Unmodified	1256.5455	0.54554978	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	22.915	22.04	2	7.7993E-06	19083	160511_QHF_FH_JSI10i_2	112.71	98.042			0.047493	0.044982	230.86	3	3	Plateau	1.3584	1.1542	180.47	2	2	Median	NaN	NaN	NaN	0	0	Median	0.041453	0.041224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126770000	82656000	44112000	41130000	23087000	18043000	37369000	13177000	24191000	32228000	30351000	1877600	16041000	16041000	0	22315	1785	21130	138394;138395;138396;138397;138398;138399;138400;138401	187824;187825;187826;187827;187828;187829;187830;187831	187831			8	
HIDMVEGDEGR	0	Oxidation (M)	1272.5405	0.54046441	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	1	0			By MS/MS		2	0		2										2		22.183	21.848	2	0.02415	18337	160511_QHF_FH_JSI11i_2	48.091	42.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7005200	0	7005200	0	0	0	0	0	0	7005200	0	7005200	0	0	0	22316	1785	21130	138402;138403	187832;187833	187833			2	
HIDPVVLK	1	Unmodified	919.5491	0.54910224	5237	Q9UBI1	COMMD3	COMM domain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.384	33.054	2	0.0079547	28042	160511_QHF_FH_JSI12i_2	67.981	24.857			1.1613	1.2888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1613	1.2888	NaN	1	1	Median	78241000	58190000	20050000	0	0	0	0	0	0	0	0	0	78241000	58190000	20050000	22317	5237	21131	138404	187834	187834			1	
HIEEVRK	1	Unmodified	909.50321	0.50321468	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.08		11	7						1	3	5	8	3	6.1533	5.924	2;3	0.00071026	3286	160511_QHF_FH_JSI12i_3	128.86	88.288			5.2825	5.3617	205.39	16	15	Median	18.874	16.345	223.11	3	3	Plateau	17.215	21.047	140.85	4	3	Linear	5.254	5.3264	264.57	7	7	Median	12.558	12.825	2.1929	2	2	Median	9234700000	1639200000	7595400000	401580000	81303000	320280000	586490000	160400000	426090000	4514900000	922260000	3592600000	3731700000	475240000	3256400000	22318	1105	21132	138405;138406;138407;138408;138409;138410;138411;138412;138413;138414;138415;138416;138417;138418;138419;138420;138421;138422;138423	187835;187836;187837;187838;187839;187840;187841;187842;187843;187844;187845;187846;187847;187848;187849;187850;187851;187852;187853	187851			19	
HIESMIR	0	Unmodified	884.45382	0.45382165	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		20.904	20.333	2	0.0057784	17420	160511_QHF_FH_JSI10i_2	97.068	56.147			0.079221	0.088426	156.09	2	2	Median	NaN	NaN	NaN	0	0	Median	0.21743	0.26664	NaN	1	1	Median	0.028864	0.029325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	209970000	194220000	15744000	0	0	0	83064000	73531000	9532100	126900000	120690000	6212300	0	0	0	22319	1674	21133	138424;138425	187854;187855	187855			2	
HIEVQVAQETR	0	Unmodified	1308.6786	0.67861287	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	25.453	24.792	2	0.00011006	20446	160511_QHF_FH_JSI11i_2	97.734	81.531			18.366	19.13	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18.366	19.13	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54626000	33159000	21468000	0	0	0	0	0	0	40666000	19198000	21468000	13961000	13961000	0	22320	404	21134	138426;138427;138428	187856;187857;187858	187857			3	
HIEWESVLTNTAGCLR	0	Unmodified	1884.9152	0.9152311	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.913	82.704	3	0.0097304	71852	160511_QHF_FH_JSI12i_3	44.925	21.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7465700	7465700	0	0	0	0	0	0	0	0	0	0	7465700	7465700	0	22321	442	21135	138429	187859	187859			1	
HIFCYLYSCFQR	0	Unmodified	1692.7541	0.75410277	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.053	71.986	2	0.00036743	39408	160513_QHF_FH_JSI10Kac_6	90.827	85.103			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14276000	0	14276000	0	0	0	14276000	0	14276000	0	0	0	0	0	0	22322	2497	21136	138430	187860	187860			1	
HIFENVIGPK	1	Unmodified	1152.6291	0.62914348	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	43.865	43.632	2	0.00018964	37165	160511_QHF_FH_JSI12i_3	93.111	67.068			0.56592	0.58642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56592	0.58642	NaN	1	1	Median	39258000	30271000	8987000	0	0	0	0	0	0	0	0	0	39258000	30271000	8987000	22323	1403	21137	138431;138432	187861;187862	187862			2	
HIFNKHAEK	2	Acetyl (K)	1164.604	0.60399136	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		23.676	14.573	3	0.0063293	9364	160513_QHF_FH_JSI11Kac_6	60.064	46.472			0.076958	0.077505	47.052	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.076958	0.077505	47.052	2	2	Median	NaN	NaN	NaN	0	0	Median	5500200	5161800	338410	0	0	0	0	0	0	5500200	5161800	338410	0	0	0	22324	4521	21138	138433;138434	187863;187864	187864	3179		2	
HIFPASR	0	Unmodified	826.44497	0.44497152	2529	Q14320;Q9Y247	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			15.699	14.706	2	0.0071824	11905	160511_QHF_FH_JSI10i_3	89.673	48.171			2.9378	2.8943	436.79	2	2	Median	79.257	63.517	NaN	1	1	Median	0.10889	0.13189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178380000	79229000	99152000	92861000	3154100	89707000	85521000	76075000	9445700	0	0	0	0	0	0	22325	2529	21139	138435;138436;138437	187865;187866;187867	187865			3	
HIFSEDTSDFSGMSETK	1	Unmodified	1916.8098	0.80982255	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	2.59	3	17	4					1		4	5	8	8	52.757	51.572	2;3	1.882E-37	44627	160511_QHF_FH_JSI11i_2	241.51	227.61			0.076615	0.081066	160.36	9	9	Plateau	0.11194	0.094859	7.7453	2	2	Median	0.074114	0.09227	35.949	2	2	Median	0.058339	0.060448	290.15	3	3	Plateau	0.073408	0.081559	6.4768	2	2	Median	4286200000	2011200000	2275100000	705880000	261100000	444780000	968150000	435770000	532380000	1592300000	818940000	773340000	1019900000	495350000	524580000	22326	1464	21140	138438;138439;138440;138441;138442;138443;138444;138445;138446;138447;138448;138449;138450;138451;138452;138453;138454;138455;138456;138457;138458;138459;138460;138461;138462	187868;187869;187870;187871;187872;187873;187874;187875;187876;187877;187878;187879;187880;187881;187882;187883;187884;187885;187886;187887;187888;187889;187890;187891;187892;187893;187894;187895;187896;187897;187898;187899;187900;187901;187902;187903;187904;187905	187889			38	
HIFSEDTSDFSGMSETK	1	Oxidation (M)	1932.8047	0.80473718	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.11		6	2					2		1	2	3	4	42.639	39.971	2;3	5.7598E-06	34154	160511_QHF_FH_JSI12i_2	99.909	96.289			2.1546	2.3764	130.66	5	5	Median	NaN	NaN	NaN	0	0	Median	3.6761	4.5746	NaN	1	1	Median	1.1725	1.1577	184.92	2	2	Median	0.87114	0.95867	128.38	2	2	Median	187970000	69852000	118120000	7615800	0	7615800	37599000	10092000	27507000	70407000	22332000	48076000	72345000	37428000	34917000	22327	1464	21140	138463;138464;138465;138466;138467;138468;138469;138470;138471;138472	187906;187907;187908;187909;187910;187911;187912;187913;187914;187915;187916	187906		1131	11	
HIFVFQASHPLSWGR	0	Unmodified	1780.9162	0.9161578	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	75.848	67.901	3;4	2.6352E-11	36803	160513_QHF_FH_JSI11Kac_6	130.27	118.58			0.5217	0.54933	71.189	4	3	Median	NaN	NaN	NaN	0	0	Median	0.26578	0.31433	24.126	2	2	Median	0.87454	0.80945	NaN	1	0	Median	1.1852	1.2615	NaN	1	1	Median	330350000	221770000	108570000	0	0	0	228040000	172640000	55400000	61253000	27690000	33564000	41054000	21445000	19609000	22328	1631	21141	138473;138474;138475;138476	187917;187918;187919;187920;187921	187918			5	
HIGKYLK	2	Acetyl (K)	899.52289	0.52288749	3027	Q68DQ2	CRYBG3	Very large A-kinase anchor protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									3		1		2	33.629	24.859	2	0.022231	13131	160513_QHF_FH_JSI12Kac_6	81.297	18.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19892000	7092600	12800000	0	0	0	6951700	0	6951700	0	0	0	12941000	7092600	5848100	22329	3027	21142	138477;138478;138479	187922;187923;187924	187922	2744		3	
HIGLVYSGMGPDYR	0	Oxidation (M)	1579.7453	0.74531222	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	2	2	4	5	50.887	45.824	2;3	0.00078011	24125	160513_QHF_FH_JSI9Kac_6	99.653	84.081			0.39147	0.36623	159.27	6	6	Median	0.36892	0.30521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0317	1.899	222.87	2	2	Median	0.36633	0.34151	160.13	3	3	Median	362980000	158720000	204260000	10996000	5409300	5586300	10496000	3878300	6617300	99384000	30255000	69129000	242100000	119180000	122930000	22330	1265	21143	138480;138481;138482;138483;138484;138485;138486;138487;138488;138489;138490;138491;138492	187925;187926;187927;187928;187929;187930;187931;187932;187933;187934;187935;187936;187937	187929		893	13	
HIGLVYSGMGPDYR	0	Unmodified	1563.7504	0.7503976	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.57		11	14						16	9	12	11	9	59.933	55.627	2;3	1.5163E-33	49336	160511_QHF_FH_JSI11i_3	233.54	195.81			0.64023	0.67714	119.02	33	30	Median	1.0421	0.90446	120.89	7	6	Median	0.50002	0.60291	112.67	9	8	Median	0.67136	0.68867	132.44	10	10	Median	0.64023	0.69581	131.18	7	6	Median	3069100000	1686800000	1382300000	296760000	139880000	156890000	864330000	515890000	348440000	1062800000	539960000	522830000	845180000	491070000	354110000	22331	1265	21143	138493;138494;138495;138496;138497;138498;138499;138500;138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511;138512;138513;138514;138515;138516;138517;138518;138519;138520;138521;138522;138523;138524;138525;138526;138527;138528;138529;138530;138531;138532;138533	187938;187939;187940;187941;187942;187943;187944;187945;187946;187947;187948;187949;187950;187951;187952;187953;187954;187955;187956;187957;187958;187959;187960;187961;187962;187963;187964;187965;187966;187967;187968;187969;187970;187971;187972;187973;187974;187975;187976;187977;187978;187979;187980;187981;187982;187983;187984;187985;187986;187987	187939			50	
HIGPLLER	0	Unmodified	933.5396	0.53960019	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		31.183	30.492	2	0.024381	26202	160511_QHF_FH_JSI11i_3	53.554	14.336			0.084177	0.087248	138.72	2	2	Median	NaN	NaN	NaN	0	0	Median	0.20093	0.23267	NaN	1	1	Median	0.035265	0.032717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86039000	81311000	4727800	0	0	0	42310000	38292000	4017800	43729000	43019000	709940	0	0	0	22332	3382	21144	138534;138535	187988;187989	187988			2	
HIGVLGTSK	1	Unmodified	910.52362	0.52361577	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			22.052	20.848	2	0.0076443	17074	160511_QHF_FH_JSI10i_3	61.962	33.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20789000	20789000	0	0	0	0	20789000	20789000	0	0	0	0	0	0	0	22333	1577	21145	138536	187990	187990			1	
HIGYDDSSK	1	Unmodified	1020.4512	0.45123869	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.39	1	6	3					6	1	5	4	5	3	11.357	8.2976	2	0.00058064	7317	160511_QHF_FH_JSI12i_2	88.37	83.775			0.52705	0.4442	140.77	14	10	Median	0.52983	0.43968	186.01	4	3	Median	0.39831	0.4751	100.34	4	3	Median	0.49578	0.48237	170.95	4	2	Median	0.88148	0.97676	161.34	2	2	Median	2437800000	1364300000	1073500000	309910000	217360000	92544000	465300000	291440000	173860000	885380000	397640000	487730000	777170000	457830000	319350000	22334	1370	21146	138537;138538;138539;138540;138541;138542;138543;138544;138545;138546;138547;138548;138549;138550;138551;138552;138553	187991;187992;187993;187994;187995;187996;187997;187998;187999;188000;188001;188002;188003;188004;188005;188006	187992			16	
HIHIPLLVK	1	Unmodified	1068.6808	0.68078512	4842	Q9HBH5	RDH14	Retinol dehydrogenase 14	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	62.679	62.399	3	0.0047956	53730	160511_QHF_FH_JSI12i_3	42.287	30.24			1.821	1.8661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.821	1.8661	NaN	1	0	Median	15540000	4919500	10620000	0	0	0	0	0	0	0	0	0	15540000	4919500	10620000	22335	4842	21147	138554;138555	188007;188008	188007			2	
HIIEDTEEAR	0	Unmodified	1211.5782	0.57823012	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		14.283	14.06	2	0.011582	11147	160511_QHF_FH_JSI11i_2	46.462	35.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22336	4303	21148	138556	188009	188009			1	
HIILVLSGK	1	Unmodified	978.6226	0.62260154	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.39			9						13	5	6	5	6	55.207	49.161	2;3	4.8684E-06	41964	160511_QHF_FH_JSI12i_3	133.55	60.509			1.3502	1.1683	406.69	13	13	Median	0.15194	0.1307	475.58	4	4	Median	0.015287	0.018264	285.34	3	3	Plateau	2.2165	2.208	410.24	3	3	Median	3.4493	3.8232	538.76	3	3	Median	5386500000	2537200000	2849300000	1301200000	602350000	698810000	1650000000	871990000	778020000	1332100000	579340000	752760000	1103200000	483540000	619670000	22337	5689	21149	138557;138558;138559;138560;138561;138562;138563;138564;138565;138566;138567;138568;138569;138570;138571;138572;138573;138574;138575;138576;138577;138578	188010;188011;188012;188013;188014;188015;188016;188017;188018;188019;188020;188021;188022;188023;188024;188025;188026;188027;188028;188029;188030;188031;188032;188033;188034;188035	188026			26	
HIISATSLSTSPTELGSR	0	Unmodified	1855.964	0.96395543	2903	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		52.475	52.475	3	0.04176	46565	160511_QHF_FH_JSI11i_3	27.838	15.746			0.27961	0.25456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27961	0.25456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32840000	29434000	3406400	0	0	0	0	0	0	32840000	29434000	3406400	0	0	0	22338	2903	21150	138579	188036	188036			1	
HIISHLFSQPK	1	Unmodified	1305.7194	0.71935547	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	3	3	1	1	42.364	39.344	3	1.2841E-05	32441	160511_QHF_FH_JSI12i_3	94.767	86.462			0.51073	0.4444	88.151	8	6	Median	0.94627	0.76028	53.485	3	3	Plateau	0.31007	0.35954	104.13	3	2	Median	0.41696	0.39064	NaN	1	1	Median	0.1446	0.14587	NaN	1	0	Median	804520000	617180000	187340000	247230000	152820000	94410000	427240000	373880000	53360000	73968000	46409000	27559000	56077000	44066000	12012000	22339	2303	21151	138580;138581;138582;138583;138584;138585;138586;138587	188037;188038;188039;188040;188041;188042;188043;188044;188045;188046	188045			10	
HIISPNPHVR	0	Unmodified	1168.6465	0.64652488	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			19.64	18.474	3	0.0024482	14786	160511_QHF_FH_JSI9i_3	50.978	45.662			0.37379	0.35888	19.368	2	2	Median	0.49495	0.41156	NaN	1	1	Median	0.28228	0.31295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66874000	47682000	19192000	46205000	31754000	14450000	20669000	15927000	4741500	0	0	0	0	0	0	22340	2997	21152	138588;138589	188047;188048	188048			2	
HIITLGQVIHK	1	Unmodified	1257.7557	0.75574098	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	51.688	49.103	3	8.9253E-07	42205	160511_QHF_FH_JSI10i_3	110.46	88.411			2.8015	2.7399	160.29	4	4	Median	0.36789	0.30449	NaN	1	1	Median	10.395	11.841	NaN	1	1	Median	1.522	1.4152	NaN	1	1	Median	5.1568	5.3046	NaN	1	1	Median	320650000	107040000	213610000	71424000	49052000	22372000	12939000	704330	12235000	89262000	21789000	67473000	147020000	35493000	111530000	22341	3583	21153	138590;138591;138592;138593;138594	188049;188050;188051;188052;188053;188054	188050			6	
HIITTTR	0	Unmodified	840.48175	0.48175096	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	8.7589	8.4264	2	0.010954	6339	160511_QHF_FH_JSI9i_2	79.146	58.664			0.06545	0.06266	72.126	5	5	Median	0.093576	0.078951	78.006	2	2	Median	0.14768	0.18167	NaN	1	1	Median	0.06545	0.06266	NaN	1	1	Median	0.032903	0.033446	NaN	1	1	Median	827920000	782210000	45703000	117820000	107450000	10370000	229100000	218510000	10593000	244810000	234100000	10705000	236190000	222150000	14035000	22342	738	21154	138595;138596;138597;138598;138599;138600	188055;188056;188057;188058;188059;188060	188058			6	
HIITVDGKPPTWSEFPK	2	Unmodified	1951.0203	0.020348097	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7								3	3	3	64.983	64.535	3;4	3.209E-06	55292	160511_QHF_FH_JSI12i_3	105.89	96.355			0.46274	0.51388	155.29	9	9	Median	NaN	NaN	NaN	0	0	Median	0.46274	0.51388	61.721	3	3	Median	3.2124	3.0736	193.08	3	3	Median	0.20711	0.20577	210	3	3	Median	1256500000	685700000	570770000	0	0	0	133880000	83952000	49929000	399820000	188600000	211210000	722770000	413140000	309630000	22343	707	21155	138601;138602;138603;138604;138605;138606;138607;138608;138609	188061;188062;188063;188064;188065;188066;188067;188068;188069;188070;188071;188072	188068			12	
HIIYVDNK	1	Unmodified	1000.5342	0.53418046	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.4	6.86		2							3	1	1	3		28.114	22.749	2	0.00032001	19128	160511_QHF_FH_JSI11i_2	112.17	53.19			0.87614	0.88629	159.66	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87614	0.88629	159.66	3	2	Median	NaN	NaN	NaN	0	0	Median	209810000	88134000	121680000	2911500	2911500	0	4184400	4184400	0	202720000	81038000	121680000	0	0	0	22344	418	21156	138610;138611;138612;138613;138614	188073;188074;188075;188076;188077	188074			5	
HILAAEQK	1	Unmodified	908.50797	0.50796571	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	10.242	9.7973	2	0.0047708	7422	160511_QHF_FH_JSI12i_2	75.213	40.405			3.5945	3.7748	32.631	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0064	2.997	NaN	1	1	Median	4.2976	4.7545	NaN	1	1	Median	51951000	10811000	41141000	0	0	0	0	0	0	30837000	8101500	22735000	21115000	2709300	18405000	22345	141	21157	138615;138616	188078;188079	188078			2	
HILANFK	1	Unmodified	841.48102	0.48102268	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.77		6	15						7	7	7	8	6	29.653	26.656	2;3	2.5881E-05	14985	160513_QHF_FH_JSI10Kac_6	142.63	77.367			1.529	1.5453	397.97	23	20	Median	0.72528	0.6297	423.35	6	5	Median	1.8203	2.2129	392.32	6	5	Median	0.44748	0.43821	443.86	6	6	Median	1.529	1.5453	436.8	5	4	Median	17139000000	7710800000	9428000000	3555500000	1485900000	2069600000	3516400000	1478700000	2037700000	4831200000	2761000000	2070200000	5235800000	1985200000	3250600000	22346	1036	21158	138617;138618;138619;138620;138621;138622;138623;138624;138625;138626;138627;138628;138629;138630;138631;138632;138633;138634;138635;138636;138637;138638;138639;138640;138641;138642;138643;138644	188080;188081;188082;188083;188084;188085;188086;188087;188088;188089;188090;188091;188092;188093;188094;188095;188096;188097;188098;188099;188100;188101;188102;188103;188104;188105;188106;188107;188108;188109;188110;188111;188112;188113;188114	188114			35	
HILEITVLR	0	Unmodified	1092.6655	0.66552898	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.714	59.446	2	0.040479	51172	160511_QHF_FH_JSI12i_3	46.129	11.321			4.6593	4.792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6593	4.792	NaN	1	1	Median	15164000	2142000	13022000	0	0	0	0	0	0	0	0	0	15164000	2142000	13022000	22347	2621	21159	138645	188115	188115			1	
HILGFDTGDAVLNEAAQILR	0	Unmodified	2152.1277	0.12766671	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	101.91	101.79	3	2.2258E-14	87737	160511_QHF_FH_JSI12i_2	145.91	129.61			0.88471	0.99581	5.7766	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74499	0.91161	NaN	1	0	Median	0.88471	0.89846	NaN	1	1	Median	0.8963	0.99945	NaN	1	0	Median	295980000	154620000	141360000	0	0	0	72423000	41902000	30520000	124880000	61859000	63017000	98680000	50858000	47822000	22348	5486	21160	138646;138647;138648	188116;188117;188118	188116			2	
HILILQNK	1	Unmodified	977.6022	0.60220045	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.94		9	18						10	10	8	11	8	38.205	35.18	2;3	2.3362E-16	19587	160513_QHF_FH_JSI10Kac_6	176.98	78.847			2.0462	2.3233	419.8	29	28	Median	0.014512	0.01209	421.57	6	5	Median	0.01194	0.014021	453.4	6	6	Median	22.754	21.937	385.54	10	10	Median	2.0462	2.3233	439.3	7	7	Median	10095000000	4959400000	5135100000	2726900000	1368700000	1358200000	2006900000	1163300000	843570000	2669000000	1095100000	1573900000	2691700000	1332300000	1359500000	22349	1508	21161	138649;138650;138651;138652;138653;138654;138655;138656;138657;138658;138659;138660;138661;138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672;138673;138674;138675;138676;138677;138678;138679;138680;138681;138682;138683;138684;138685	188119;188120;188121;188122;188123;188124;188125;188126;188127;188128;188129;188130;188131;188132;188133;188134;188135;188136;188137;188138;188139;188140;188141;188142;188143;188144;188145;188146;188147;188148;188149;188150;188151;188152;188153;188154;188155;188156;188157;188158;188159;188160;188161;188162;188163;188164	188163			46	
HILLQYLILFQYLK	1	Unmodified	1804.0651	0.065113445	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.403	92.682	3	8.2572E-05	54189	160513_QHF_FH_JSI10Kac_6	102.62	92.028			0.30857	0.35212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30857	0.35212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59565000	46488000	13077000	0	0	0	59565000	46488000	13077000	0	0	0	0	0	0	22350	4076	21162	138686	188165	188165			1	
HILQFVAIK	1	Unmodified	1067.6492	0.64915064	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			7						7	4	4	4	2	65.729	60.883	2;3	3.8591E-12	32857	160513_QHF_FH_JSI11Kac_6	162.5	104.94			40.844	35.687	367.41	10	10	Median	1.3584	1.1258	439.87	4	4	Median	62.859	70.361	NaN	1	1	Median	1.7586	1.6794	363.99	4	4	Median	68.068	71.763	NaN	1	1	Median	1729700000	835900000	893750000	515410000	204800000	310620000	477050000	240890000	236160000	687320000	378990000	308330000	49868000	11217000	38650000	22351	4494	21163	138687;138688;138689;138690;138691;138692;138693;138694;138695;138696;138697;138698;138699;138700	188166;188167;188168;188169;188170;188171;188172;188173;188174;188175;188176;188177;188178;188179	188170			14	
HILVSQGLIR	0	Unmodified	1134.6873	0.68732706	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			47.036	45.45	2	0.0048034	37920	160511_QHF_FH_JSI10i_3	64.485	43.964			0.071589	0.069039	38.535	2	2	Median	0.064786	0.052572	NaN	1	1	Median	0.079106	0.090664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52549000	50321000	2227900	23974000	23154000	820100	28574000	27167000	1407800	0	0	0	0	0	0	22352	2947	21164	138701;138702	188180;188181	188180			2	
HIMGQNVADYMR	0	Oxidation (M)	1449.6493	0.64930335	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	2.41		7	22						1	4	9	6	11	33.994	32.918	2;3	1.5708E-15	30107	160511_QHF_FH_JSI12i_3	155.53	128.42			1.5937	1.3228	131.15	22	14	Median	1.5937	1.3228	81.121	4	1	Median	1.6207	1.894	132.17	8	6	Median	7.5074	7.0645	79.017	3	3	Median	0.7741	0.7799	142.61	7	4	Median	1851000000	618910000	1232000000	144100000	58685000	85412000	404310000	144270000	260040000	417230000	48650000	368580000	885320000	367300000	518020000	22353	1590	21165	138703;138704;138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715;138716;138717;138718;138719;138720;138721;138722;138723;138724;138725;138726;138727;138728;138729;138730;138731;138732	188182;188183;188184;188185;188186;188187;188188;188189;188190;188191;188192;188193;188194;188195;188196;188197;188198;188199;188200;188201;188202;188203;188204;188205;188206;188207;188208;188209;188210;188211;188212;188213	188204		1250;1251	31	
HIMGQNVADYMR	0	Unmodified	1433.6544	0.65438873	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.2		14	16						13	11	12	10	10	48.604	45.141	2;3	1.1569E-33	37869	160511_QHF_FH_JSI10i_3	240.1	195.12			0.92466	0.96615	258.86	32	31	Median	6.236	5.4115	245.59	9	9	Median	0.11986	0.13797	254.23	7	7	Median	9.6201	9.5116	310.53	7	7	Median	0.16524	0.18322	271.69	9	8	Median	13655000000	6130000000	7524900000	1912300000	714060000	1198200000	3259400000	1559000000	1700400000	3996300000	1873000000	2123300000	4486900000	1984000000	2503000000	22354	1590	21165	138733;138734;138735;138736;138737;138738;138739;138740;138741;138742;138743;138744;138745;138746;138747;138748;138749;138750;138751;138752;138753;138754;138755;138756;138757;138758;138759;138760;138761;138762;138763;138764;138765;138766;138767;138768;138769;138770;138771;138772;138773;138774;138775	188214;188215;188216;188217;188218;188219;188220;188221;188222;188223;188224;188225;188226;188227;188228;188229;188230;188231;188232;188233;188234;188235;188236;188237;188238;188239;188240;188241;188242;188243;188244;188245;188246;188247;188248;188249;188250;188251;188252;188253;188254;188255;188256;188257;188258;188259;188260;188261;188262;188263;188264;188265;188266;188267;188268;188269;188270;188271;188272;188273;188274;188275;188276;188277;188278;188279;188280;188281;188282;188283	188231			70	
HIMGQNVADYMR	0	2 Oxidation (M)	1465.6442	0.64421797	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	2	0		By MS/MS			3	0			1								1			30.304	28.961	3	0.028459	24085	160511_QHF_FH_JSI10i_3	38.58	34.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8749300	8749300	0	0	0	0	8749300	8749300	0	0	0	0	0	0	0	22355	1590	21165	138776	188284	188284		1250;1251	1	
HIMSEPEEITTMSGQK	1	Unmodified	1816.8335	0.83353488	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.567	46.063	2	9.8165E-06	39589	160511_QHF_FH_JSI11i_2	117.79	108.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9891400	9891400	0	0	0	0	0	0	0	9891400	9891400	0	0	0	0	22356	5366	21166	138777;138778	188285;188286	188286			2	
HINDSAPEVR	0	Unmodified	1136.5574	0.5574351	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	14.658	14.053	2	0.00022912	11627	160511_QHF_FH_JSI9i_2	91.867	71.346			0.71519	0.61378	60.643	5	5	Median	0.71519	0.61378	NaN	1	1	Median	0.81195	0.99233	NaN	1	1	Median	0.35203	0.35103	NaN	1	1	Median	0.70928	0.76678	92.512	2	2	Median	265800000	108640000	157160000	50629000	18570000	32058000	72370000	21442000	50928000	83553000	39125000	44427000	59251000	29504000	29748000	22357	2485	21167	138779;138780;138781;138782;138783;138784;138785;138786	188287;188288;188289;188290;188291;188292;188293;188294	188290			8	
HINELSMK	1	Unmodified	970.4906	0.49060109	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		21.265	20.68	2	0.0043495	16996	160511_QHF_FH_JSI11i_2	76.17	35.967			2.8879	3.2072	102.38	2	2	Median	NaN	NaN	NaN	0	0	Median	5.3417	6.615	NaN	1	1	Median	1.5613	1.555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134930000	45671000	89255000	0	0	0	47894000	10030000	37864000	87033000	35642000	51391000	0	0	0	22358	3699	21168	138787;138788	188295;188296	188295			2	
HINEVYYAK	1	Unmodified	1135.5662	0.56620887	2459	Q13627;Q9Y463	DYRK1A;DYRK1B	Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		23.068	22.723	2	0.0076443	18853	160511_QHF_FH_JSI11i_2	61.962	45.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9864300	9864300	0	0	0	0	0	0	0	9864300	9864300	0	0	0	0	22359	2459	21169	138789	188297	188297			1	
HINMDGTINVDDFK	1	Unmodified	1617.7457	0.74570615	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	64.199	63.126	2	0.00055576	54206	160511_QHF_FH_JSI12i_2	70.488	53.817			5.7695	6.5687	242.88	2	1	Median	NaN	NaN	NaN	0	0	Median	30.536	36.588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0901	1.1793	NaN	1	0	Median	30201000	14570000	15631000	0	0	0	7394700	230680	7164100	0	0	0	22806000	14339000	8466800	22360	552	21170	138790;138791;138792	188298;188299;188300	188298			3	
HINPSQDELTVR	0	Unmodified	1407.7106	0.71064128	3485	Q8IZP9	GPR64	G-protein coupled receptor 64	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		28.908	28.13	2	0.0014117	24325	160511_QHF_FH_JSI9i_2	75.294	66.431			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65629000	0	65629000	16777000	0	16777000	18811000	0	18811000	30040000	0	30040000	0	0	0	22361	3485	21171	138793;138794;138795	188301;188302;188303	188301			3	
HINPVAASLIQK	1	Unmodified	1289.7456	0.74557022	1794	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	47.028	46.515	2;3	0.0008633	39594	160511_QHF_FH_JSI12i_3	64.121	46.456			3.0694	3.1427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0694	3.1427	NaN	1	1	Median	142180000	17394000	124790000	0	0	0	12710000	12710000	0	23796000	0	23796000	105670000	4683300	100990000	22362	1794	21172	138796;138797;138798;138799	188304;188305;188306;188307	188307			4	
HINTWVAEK	1	Unmodified	1096.5665	0.56654322	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	3.54		10	15						2	8	6	7	6	28.769	27.459	2;3	2.5823E-07	22003	160511_QHF_FH_JSI12i_3	147.75	85.037			0.41056	0.3913	287.69	23	19	Median	3.6909	3.1525	218.45	7	7	Median	0.17995	0.21437	359.13	5	4	Median	0.11214	0.10331	80.055	5	3	Median	5.7414	6.3382	351.6	6	5	Median	4389800000	2347700000	2042100000	598900000	250590000	348310000	505820000	291000000	214820000	1283500000	888450000	395050000	2001600000	917640000	1084000000	22363	1425	21173	138800;138801;138802;138803;138804;138805;138806;138807;138808;138809;138810;138811;138812;138813;138814;138815;138816;138817;138818;138819;138820;138821;138822;138823;138824;138825;138826	188308;188309;188310;188311;188312;188313;188314;188315;188316;188317;188318;188319;188320;188321;188322;188323;188324;188325;188326;188327;188328;188329;188330;188331;188332;188333;188334;188335;188336;188337	188334			30	
HIPANRGEIK	1	Unmodified	1133.6305	0.63054046	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				13.917	13.025	3	0.024895	10170	160511_QHF_FH_JSI9i_3	31.286	17.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22364	3132	21174	138827	188338	188338			1	
HIPGSPFTAK	1	Unmodified	1053.5607	0.56072956	512;2527	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							3	4	3	3	34.927	34.25	2;3	1.0963E-06	29471	160511_QHF_FH_JSI11i_3	126.41	116			0.73119	0.60732	301.82	12	12	Median	4.287	3.4868	241.08	3	3	Median	0.074228	0.089258	276.38	3	3	Median	0.073748	0.077487	327.38	3	3	Median	12.012	11.833	463.33	3	3	Median	2129100000	1237200000	891910000	219380000	101300000	118080000	333620000	223030000	110590000	560170000	359750000	200420000	1015900000	553080000	462820000	22365	512;2527	21175	138828;138829;138830;138831;138832;138833;138834;138835;138836;138837;138838;138839;138840	188339;188340;188341;188342;188343;188344;188345;188346;188347;188348;188349;188350;188351;188352;188353;188354;188355	188340			17	
HIPIAGR	0	Unmodified	762.45006	0.4500569	1939	P61158;Q9C0K3	ACTR3;ACTR3C	Actin-related protein 3;Actin-related protein 3C	no	no	0	0	0	0	By MS/MS				3	0			1							1				18.602	17.441	2	0.041113	14006	160511_QHF_FH_JSI9i_3	49.312	34.091			0.6895	0.55066	NaN	1	1	Median	0.6895	0.55066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246970000	166090000	80878000	246970000	166090000	80878000	0	0	0	0	0	0	0	0	0	22366	1939	21176	138841	188356	188356			1	
HIQALAIR	0	Unmodified	920.55558	0.55558461	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	1	3	2	1	31.925	29.638	2	0.001626	25123	160511_QHF_FH_JSI11i_3	100.75	63.78			9.132	10.613	303.24	5	5	Median	5.7747	4.6916	NaN	1	1	Median	0.36517	0.42884	453.78	2	2	Median	11.277	10.806	NaN	1	1	Median	38.886	40.868	NaN	1	1	Median	350360000	126450000	223910000	77728000	16692000	61036000	156110000	104350000	51764000	58424000	3700000	54724000	58099000	1713600	56386000	22367	1060	21177	138842;138843;138844;138845;138846;138847;138848	188357;188358;188359;188360;188361;188362;188363	188357			7	
HIQEHYGGTATFYLSQAADGAK	1	Unmodified	2364.1135	0.11347321	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.314	56.314	3	0.027532	49946	160511_QHF_FH_JSI11i_3	24.282	10.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22368	1739	21178	138849	188364	188364			1	
HIQELSGDNIDQIK	1	Unmodified	1608.8107	0.81074925	978	P10746	UROS	Uroporphyrinogen-III synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		45.442	44.713	2	2.5062E-07	38483	160511_QHF_FH_JSI11i_2	93.058	66.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22369	978	21179	138850;138851	188365;188366	188365			2	
HIQGLEK	1	Unmodified	823.4552	0.45520186	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.168	12.956	2	0.045207	10107	160511_QHF_FH_JSI11i_2	48.561	0.71265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24866000	24866000	0	0	0	0	0	0	0	24866000	24866000	0	0	0	0	22370	1512	21180	138852	188367	188367			1	
HIQQVDCSGNDLEQLHIK	1	Unmodified	2133.0273	0.027300743	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.711	49.473	3	0.00015944	42373	160511_QHF_FH_JSI12i_3	62.94	52.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22371	1790	21181	138853	188368	188368			1	
HIQSNLDFSPVNSASSEENVK	1	Unmodified	2301.0873	0.087318043	199	O14757	CHEK1	Serine/threonine-protein kinase Chk1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	53.808	53.57	3	1.401E-09	45970	160511_QHF_FH_JSI12i_3	99.407	76.754			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22372	199	21182	138854	188369	188369			1	
HISDGVADSGLTLK	1	Unmodified	1411.7307	0.73070802	3442	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.485	43.991	2	0.00097094	37807	160511_QHF_FH_JSI11i_2	83.397	56.282			0.86738	0.84441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86738	0.84441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9700800	7100500	2600300	0	0	0	0	0	0	9700800	7100500	2600300	0	0	0	22373	3442	21183	138855	188370	188370			1	
HISDSVFLEAAK	1	Unmodified	1315.6772	0.67721588	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	53.446	52.234	3	0.00013004	44782	160511_QHF_FH_JSI12i_2	83.045	73.257			0.19298	0.18204	5.5157	2	2	Median	0.20674	0.17508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18013	0.18928	NaN	1	1	Median	23396000	20522000	2874400	9670500	8223600	1446900	0	0	0	0	0	0	13726000	12298000	1427500	22374	1225	21184	138856;138857;138858	188371;188372;188373	188371			3	
HISEGCVFIYCQVGEK	1	Unmodified	1924.8812	0.88115378	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	66.889	57.954	3	0.00023883	31860	160513_QHF_FH_JSI10Kac_6	86.378	64.537			1.6241	1.8197	29.321	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9039	2.239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3855	1.479	NaN	1	1	Median	23337000	5663400	17674000	0	0	0	16642000	3966700	12676000	0	0	0	6694600	1696600	4998000	22375	4367	21185	138859;138860	188374;188375	188375			2	
HISFFDFFK	1	Unmodified	1186.5811	0.58113065	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4		2	1	2	89.304	81.724	2	0.0004724	46820	160513_QHF_FH_JSI10Kac_6	92.062	76.681			1.2503	1.4612	197.45	4	4	Median	NaN	NaN	NaN	0	0	Median	1.2503	1.4612	185.76	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72372	0.78713	280.4	2	2	Median	120150000	63556000	56596000	0	0	0	82069000	47682000	34387000	0	0	0	38082000	15873000	22209000	22376	3147	21186	138861;138862;138863;138864;138865	188376;188377;188378;188379;188380	188380			5	
HISIGGK	1	Unmodified	710.40752	0.40752338	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.205	11.25	2	0.014715	8565	160511_QHF_FH_JSI12i_3	65.672	65.672			1.4364	1.4256	76.272	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5714	2.4447	NaN	1	1	Median	0.80233	0.83132	NaN	1	1	Median	291390000	152160000	139230000	0	0	0	0	0	0	107900000	26914000	80986000	183490000	125250000	58239000	22377	907	21187	138866;138867	188381;188382	188382			2	
HISPGDTK	1	Unmodified	853.42938	0.42938104	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	5.7352	5.3293	2	0.0079547	3256	160511_QHF_FH_JSI9i_2	67.981	34.242			2.6226	2.6232	123.34	3	3	Plateau	2.105	1.8487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6226	2.6232	NaN	1	1	Median	0.23955	0.26573	NaN	1	1	Median	361270000	251490000	109790000	32351000	8012000	24339000	25364000	0	25364000	53364000	16929000	36435000	250200000	226550000	23651000	22378	1251	21188	138868;138869;138870;138871	188383;188384;188385;188386	188384			4	
HISPQAK	1	Unmodified	779.42899	0.42898711	847	P06280	GLA	Alpha-galactosidase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	5.1343	4.8643	2	0.013281	2422	160511_QHF_FH_JSI12i_3	70.912	54.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212000000	184910000	27087000	0	0	0	64401000	64401000	0	70513000	70513000	0	77087000	49999000	27087000	22379	847	21189	138872;138873;138874;138875	188387;188388;188389;188390	188390			4	
HISQISVAEDDDESLLGHLMIVGK	1	Unmodified	2605.3058	0.30576701	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			14									10	4	98.037	98.039	3;4	8.3804E-33	86057	160511_QHF_FH_JSI11i_3	179.58	172.04			0.73774	0.69771	43.503	12	10	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76107	0.73582	45.309	9	8	Median	0.55226	0.57198	46.528	3	2	Plateau	408630000	212020000	196610000	0	0	0	0	0	0	321800000	159250000	162550000	86831000	52768000	34063000	22380	1683	21190	138876;138877;138878;138879;138880;138881;138882;138883;138884;138885;138886;138887;138888;138889	188391;188392;188393;188394;188395;188396;188397;188398;188399;188400;188401;188402;188403;188404;188405;188406	188396			16	
HISQISVAEDDDESLLGHLMIVGKK	2	Unmodified	2733.4007	0.40073003	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				116.87	116.24	4	0.057505	90134	160511_QHF_FH_JSI9i_3	9.4587	6.8737			0.90203	0.81141	NaN	1	0	Median	0.90203	0.81141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3032300	1508200	1524100	3032300	1508200	1524100	0	0	0	0	0	0	0	0	0	22381	1683	21191	138890	188407	188407			1	
HISVAMDK	1	Unmodified	899.45349	0.4534873	1072	P15291	B4GALT1	Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		19.45	18.91	2	0.0226	16115	160511_QHF_FH_JSI10i_2	43.808	10.069			0.41717	0.46271	27.976	2	0	Median	NaN	NaN	NaN	0	0	Median	0.46329	0.56392	NaN	1	0	Median	0.37564	0.37966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	500870000	293160000	207700000	0	0	0	200670000	137780000	62890000	300200000	155390000	144810000	0	0	0	22382	1072	21192	138891;138892	188408	188408			1	
HITAAEIDTFVSLVR	0	Unmodified	1670.8992	0.89917033	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	98.629	98.414	3	0.00021212	86005	160511_QHF_FH_JSI11i_2	65.092	58.655			0.48858	0.48393	117.12	4	4	Median	NaN	NaN	NaN	0	0	Median	0.2468	0.26733	NaN	1	1	Median	0.48858	0.4766	86.088	2	2	Median	2.944	3.0528	NaN	1	1	Median	25858000	18501000	7357200	0	0	0	3037900	2583700	454190	13403000	9149800	4252900	9417700	6767500	2650100	22383	2549	21193	138893;138894;138895;138896;138897	188409;188410;188411;188412;188413	188411			5	
HITFVDNAK	1	Unmodified	1043.54	0.53999412	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	25.965	25.606	2	0.0014448	21652	160511_QHF_FH_JSI12i_2	71.692	42.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27248000	0	27248000	0	0	0	0	0	0	27248000	0	27248000	0	0	0	22384	680	21194	138898;138899	188414;188415;188416	188414			3	
HITGLCGK	1	Unmodified	884.45382	0.45382165	5587	Q9Y3D5	MRPS18C	28S ribosomal protein S18c, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		13.797	13.797	2	0.0041769	11148	160511_QHF_FH_JSI11i_3	68.915	26.451			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22385	5587	21195	138900	188417	188417			1	
HITGSYK	1	Unmodified	804.413	0.41300269	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	4	1	4	2	7.1172	6.2048	2	0.009353	4395	160511_QHF_FH_JSI11i_3	83.614	27.104			5.7102	4.6351	260.48	11	10	Median	1.1955	0.99303	212.22	4	3	Median	13.427	16.584	NaN	1	1	Median	1.2139	1.1543	314.64	4	4	Median	2.1229	2.2754	416.18	2	2	Median	1999400000	743300000	1256100000	258030000	74359000	183670000	165080000	19830000	145250000	960050000	513860000	446190000	616210000	135250000	480960000	22386	2614	21196	138901;138902;138903;138904;138905;138906;138907;138908;138909;138910;138911	188418;188419;188420;188421;188422;188423;188424;188425;188426;188427;188428	188419			11	
HITIFSPEGR	0	Unmodified	1155.6037	0.60365701	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	4.57		5	14						3	5	6	7	4	43.413	41.219	2;3	6.8493E-07	36094	160511_QHF_FH_JSI11i_3	138.98	121.59			1.1586	1.2101	183.98	18	18	Median	0.20413	0.16575	151.06	4	4	Linear	0.37792	0.43205	182.36	4	4	Median	3.6149	3.5093	211.45	6	6	Median	3.2677	3.4152	186.51	4	4	Median	5030700000	2403500000	2627200000	577070000	386820000	190250000	1226400000	703300000	523130000	1690700000	778180000	912530000	1536400000	535170000	1001300000	22387	1922	21197	138912;138913;138914;138915;138916;138917;138918;138919;138920;138921;138922;138923;138924;138925;138926;138927;138928;138929;138930;138931;138932;138933	188429;188430;188431;188432;188433;188434;188435;188436;188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447;188448;188449;188450	188430			22	
HITLDKTWK	2	Acetyl (K)	1182.6397	0.63970816	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.15	47.424	2	0.016998	25669	160513_QHF_FH_JSI11Kac_6	64.654	33.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6902500	6902500	0	0	0	0	0	0	0	6902500	6902500	0	0	0	0	22388	4943	21198	138934	188451	188451	3275		1	
HITLIFNPTR	0	Unmodified	1210.6822	0.68224168	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	1	4	2	4	67.82	58.825	2;3	4.4346E-09	31889	160513_QHF_FH_JSI11Kac_6	127.4	112.25			3.5341	3.8198	234.31	10	10	Median	9.7188	8.3223	NaN	1	1	Median	1.0358	1.2366	329.01	4	4	Median	4.5465	4.3575	235.47	2	2	Median	0.27764	0.29862	183.99	3	3	Plateau	672360000	316030000	356330000	55616000	3880400	51735000	376330000	174590000	201740000	102730000	49686000	53046000	137680000	87881000	49801000	22389	2638;2895	21199	138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945	188452;188453;188454;188455;188456;188457;188458;188459;188460;188461;188462	188452			11	
HITLYDIR	0	Unmodified	1029.5607	0.56072956	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	53.111	43.301	2	0.0412	22625	160513_QHF_FH_JSI12Kac_6	45.718	24.418			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22390	3212	21200	138946	188463	188463			1	
HITTISDETSEQVTR	0	Unmodified	1715.8326	0.83260691	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.06		7	1					1		1	2	3	3	33.323	31.246	2;3	9.8081E-05	27625	160511_QHF_FH_JSI10i_2	134.2	119.22			1.3897	1.5211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3897	1.5211	NaN	1	1	Median	93919000	54235000	39684000	0	0	0	16570000	16570000	0	32225000	16318000	15907000	45124000	21347000	23777000	22391	2245	21201	138947;138948;138949;138950;138951;138952;138953;138954;138955	188464;188465;188466;188467;188468;188469;188470;188471;188472	188470			9	
HITTLQASFLTK	1	Unmodified	1358.7558	0.75580056	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.24	6.49			13						12	7	6	7	5	61.247	56.402	2;3	9.736E-10	30690	160513_QHF_FH_JSI11Kac_6	151.1	132.32			9.044	9.9075	289.68	14	13	Median	0.10219	0.084183	319.3	3	2	Median	11.707	13.701	238.66	4	4	Median	1.0711	1.0372	310.93	4	4	Median	9.0915	9.2961	373.51	3	3	Median	1773900000	649060000	1124900000	271800000	94354000	177450000	287520000	152520000	135000000	482990000	148560000	334430000	731600000	253620000	477990000	22392	5388	21202	138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966;138967;138968;138969;138970;138971;138972;138973;138974;138975;138976;138977;138978;138979;138980	188473;188474;188475;188476;188477;188478;188479;188480;188481;188482;188483;188484;188485;188486;188487;188488;188489;188490;188491;188492;188493;188494;188495;188496;188497	188482			25	
HIVDCIR	0	Unmodified	911.46472	0.46472069	3750	Q8WTW3	COG1	Conserved oligomeric Golgi complex subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	20.734	19.599	2	0.012344	16126	160511_QHF_FH_JSI12i_2	74.335	5.9135			4.1781	4.7451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1781	4.7451	NaN	1	1	Median	67963000	17173000	50790000	0	0	0	0	0	0	0	0	0	67963000	17173000	50790000	22393	3750	21203	138981;138982	188498;188499	188498			2	
HIVENAVQK	1	Unmodified	1036.5665	0.56654322	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							4	4	3	4	11.571	11.106	2	8.6834E-12	8730	160511_QHF_FH_JSI9i_2	176.6	136.5			3.6424	3.9829	285.33	11	11	Median	7.2065	6.1839	319.5	3	3	Median	6.0847	7.1276	337.71	3	3	Median	0.31806	0.32446	410.21	2	2	Median	1.8698	1.9411	292.31	3	3	Median	2551900000	1496000000	1055900000	401500000	215500000	185990000	638910000	357860000	281050000	794900000	499500000	295400000	716540000	423120000	293430000	22394	127	21204	138983;138984;138985;138986;138987;138988;138989;138990;138991;138992;138993;138994;138995;138996;138997	188500;188501;188502;188503;188504;188505;188506;188507;188508;188509;188510;188511;188512;188513;188514	188507			15	
HIVGEIK	1	Unmodified	794.46504	0.46503826	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		22.607	13.493	2	0.032875	8723	160513_QHF_FH_JSI11Kac_6	70.912	8.1982			0.0088311	0.0083522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0088311	0.0083522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64297000	63263000	1034000	0	0	0	0	0	0	64297000	63263000	1034000	0	0	0	22395	5369	21205	138998	188515	188515			1	
HIVIFALR	0	Unmodified	967.59672	0.59672114	5422	Q9UMN6	KMT2B	Histone-lysine N-methyltransferase 2B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			68.236	60.475	2	0.0020917	33205	160513_QHF_FH_JSI10Kac_6	75.311	61.153			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22396	5422	21206	138999	188516	188516			1	
HIVIFAMR	0	Unmodified	985.55314	0.55314176	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				62.846	53.836	2	0.03498	28539	160513_QHF_FH_JSI9Kac_6	58.246	29.734			0.11039	0.094028	NaN	1	1	Median	0.11039	0.094028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7373600	6262600	1110900	7373600	6262600	1110900	0	0	0	0	0	0	0	0	0	22397	2204	21207	139000	188517	188517			1	
HIVKEFK	2	Acetyl (K)	941.53345	0.53345218	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	32.886	24.143	2	0.0022092	13611	160513_QHF_FH_JSI11Kac_6	107.66	42.627			1.7285	1.8217	677.84	2	1	Median	NaN	NaN	NaN	0	0	Median	185.89	219.82	NaN	1	1	Median	0.016073	0.015097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	286030000	183870000	102150000	33564000	0	33564000	128640000	62087000	66555000	77439000	75407000	2031900	46381000	46381000	0	22398	1480	21208	139001;139002;139003;139004;139005	188518;188519;188520;188521;188522	188518	1474		5	
HIVKMLEK	2	Acetyl (K)	1038.5896	0.58958685	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.116	34.476	2	0.053763	18879	160513_QHF_FH_JSI11Kac_6	53.968	17.782			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3203000	3203000	0	0	0	0	0	0	0	3203000	3203000	0	0	0	0	22399	384	21209	139006	188523	188523			1	
HIVLSGGSTMYPGLPSR	0	Unmodified	1770.9087	0.90868916	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	4.71		7	11						3	6	4	7	4	61.819	60.386	2;3	9.3145E-09	53100	160511_QHF_FH_JSI9i_2	131.86	116.32			0.31409	0.28851	171.23	11	11	Median	0.84665	0.69983	165.6	3	3	Plateau	0.2404	0.28851	131.15	3	3	Median	0.95077	0.8904	295.44	2	2	Median	0.58386	0.60346	209.85	3	3	Median	1039700000	710520000	329200000	214630000	132630000	81993000	355570000	277940000	77636000	241000000	147560000	93436000	228520000	152380000	76136000	22400	1940	21210	139007;139008;139009;139010;139011;139012;139013;139014;139015;139016;139017;139018;139019;139020;139021;139022;139023;139024;139025;139026;139027	188524;188525;188526;188527;188528;188529;188530;188531;188532;188533;188534;188535;188536;188537;188538;188539;188540;188541;188542;188543;188544	188533			21	
HIVLSGGSTMYPGLPSR	0	Oxidation (M)	1786.9036	0.90360378	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			55.04	53.488	3	0.043471	44649	160511_QHF_FH_JSI10i_3	31.514	26.41			0.16567	0.19106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.16567	0.19106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33428000	29318000	4110000	0	0	0	33428000	29318000	4110000	0	0	0	0	0	0	22401	1940	21210	139028	188545	188545			1	
HIVNMAIEK	1	Unmodified	1053.5641	0.56410038	2290	Q0VDD8	DNAH14	Dynein heavy chain 14, axonemal	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.687	34.276	2	0.042549	29092	160511_QHF_FH_JSI11i_2	45.718	17.206			8.68	8.743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.68	8.743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40619000	6958200	33661000	0	0	0	0	0	0	40619000	6958200	33661000	0	0	0	22402	2290	21211	139029	188546	188546			1	
HIVPACFLAPLK	1	Unmodified	1364.7639	0.76386282	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	73.89	73.394	2;3	4.6125E-05	65074	160511_QHF_FH_JSI11i_3	95.573	81.316			4.2691	4.3975	92.463	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83755	0.79192	NaN	1	1	Median	2.0542	2.1216	103.08	2	2	Median	75896000	33939000	41958000	0	0	0	0	0	0	31917000	20042000	11875000	43979000	13897000	30082000	22403	344	21212	139030;139031;139032;139033;139034	188547;188548;188549;188550;188551	188547			5	
HIVSNDSSDSDDESHEPK	1	Unmodified	1996.8246	0.82462099	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	9.4873	9.423	3	9.4318E-09	7107	160511_QHF_FH_JSI11i_3	122.57	119.08			1.845	1.6043	NaN	1	1	Median	1.845	1.6043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84894000	39888000	45007000	19270000	6043400	13227000	0	0	0	33770000	15723000	18047000	31854000	18121000	13733000	22404	1604	21213	139035;139036;139037;139038;139039	188552;188553;188554;188555;188556	188553			5	
HIVSYLLTLSHLAAVAHK	1	Unmodified	1972.1258	0.12581622	2936	Q5T160	RARS2	Probable arginine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		88.737	80.832	4	1.7555E-56	44996	160513_QHF_FH_JSI11Kac_6	192.32	169.84			0.099555	0.085011	101.83	3	2	Median	0.099555	0.085011	NaN	1	1	Median	0.11543	0.13757	NaN	1	1	Median	0.020589	0.019487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	463780000	440450000	23334000	120790000	111020000	9770100	210000000	198510000	11486000	132990000	130910000	2077400	0	0	0	22405	2936	21214	139040;139041;139042	188557;188558;188559	188557			3	
HIVYLYGVCVR	0	Unmodified	1377.7227	0.72272629	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	67.142	57.983	2;3	4.4652E-05	30302	160513_QHF_FH_JSI12Kac_6	71.349	59.203			0.63371	0.69854	120.66	2	2	Median	NaN	NaN	NaN	0	0	Median	0.25468	0.29762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5769	1.6395	NaN	1	1	Median	53094000	38283000	14811000	0	0	0	24407000	20398000	4009900	9870600	9870600	0	18816000	8014700	10802000	22406	1230	21215	139043;139044;139045;139046;139047	188560;188561;188562;188563;188564	188562			5	
HIWITAAK	1	Unmodified	938.53379	0.53378653	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	31.063	31.024	2	0.0021004	26966	160511_QHF_FH_JSI11i_3	91.9	76.519			1.8255	1.7784	1.7213	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9067	1.8002	NaN	1	1	Median	1.7478	1.7569	NaN	1	1	Median	276440000	74037000	202400000	0	0	0	0	0	0	84626000	27465000	57161000	191810000	46572000	145240000	22407	623	21216	139048;139049	188565;188566	188565			2	
HIYAKVSGGPSLEQR	1	Acetyl (K)	1682.874	0.87401821	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		50.649	40.937	3	0.0031658	22184	160513_QHF_FH_JSI11Kac_6	62.377	49.822			0.23436	0.22441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23436	0.22441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10636000	9364600	1271000	0	0	0	0	0	0	10636000	9364600	1271000	0	0	0	22408	5494	21217	139050	188567	188567	3451		1	
HIYLLPSGR	0	Unmodified	1054.5924	0.59236404	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.29		7	10						4	6	6	6	3	45.385	43.327	2;3	5.771E-05	35517	160511_QHF_FH_JSI9i_3	83.206	69.049			2.2502	2.6732	210.95	15	15	Median	0.76819	0.63665	216.02	6	6	Median	0.48188	0.56564	246.39	4	4	Median	7.3171	6.9109	202.6	3	3	Median	11.576	11.682	31.081	2	2	Median	872380000	383360000	489020000	341800000	176400000	165400000	273860000	155550000	118310000	139770000	35630000	104140000	116950000	15768000	101180000	22409	1111	21218	139051;139052;139053;139054;139055;139056;139057;139058;139059;139060;139061;139062;139063;139064;139065;139066;139067;139068;139069;139070;139071	188568;188569;188570;188571;188572;188573;188574;188575;188576;188577;188578;188579;188580;188581;188582;188583;188584;188585;188586;188587;188588;188589;188590;188591;188592;188593	188579			26	
HIYLSTR	0	Unmodified	888.48175	0.48175096	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			18.582	17.437	2	0.01496	13936	160511_QHF_FH_JSI9i_3	64.776	38.668			0.15428	0.14995	56.164	2	2	Median	0.12368	0.1008	NaN	1	1	Median	0.19244	0.22306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90437000	75857000	14579000	37396000	31608000	5787900	53041000	44249000	8791500	0	0	0	0	0	0	22410	5309	21219	139072;139073	188594;188595	188595			2	
HIYYITGETK	1	Unmodified	1223.6186	0.61863837	880;2871	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.53		25	15				1	9	18	21	14	18	15	36.936	31.924	2;3	1.4504E-19	17608	160513_QHF_FH_JSI10Kac_6	174.41	151.05			0.33224	0.33868	291.58	54	50	Median	0.27325	0.2254	280.87	13	13	Median	0.2941	0.35105	299.11	13	12	Median	0.43243	0.43304	307.48	15	13	Median	0.7363	0.79918	307.83	13	12	Median	19386000000	9818500000	9567400000	2757800000	2103700000	654110000	4422000000	2078600000	2343400000	7020100000	3303600000	3716400000	5186000000	2332500000	2853500000	22411	880;2871	21220	139074;139075;139076;139077;139078;139079;139080;139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095;139096;139097;139098;139099;139100;139101;139102;139103;139104;139105;139106;139107;139108;139109;139110;139111;139112;139113;139114;139115;139116;139117;139118;139119;139120;139121;139122;139123;139124;139125;139126;139127;139128;139129;139130;139131;139132;139133;139134;139135;139136;139137;139138;139139;139140;139141	188596;188597;188598;188599;188600;188601;188602;188603;188604;188605;188606;188607;188608;188609;188610;188611;188612;188613;188614;188615;188616;188617;188618;188619;188620;188621;188622;188623;188624;188625;188626;188627;188628;188629;188630;188631;188632;188633;188634;188635;188636;188637;188638;188639;188640;188641;188642;188643;188644;188645;188646;188647;188648;188649;188650;188651;188652;188653;188654;188655;188656;188657;188658;188659;188660;188661;188662;188663;188664;188665;188666;188667;188668;188669;188670;188671;188672;188673;188674;188675;188676;188677;188678;188679;188680;188681;188682;188683;188684;188685;188686;188687;188688;188689;188690;188691;188692;188693;188694	188690			99	
HIYYITGETKDQVANSAFVER	1	Acetyl (K)	2482.2129	0.21285291	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	76.575	67.212	3	5.0578E-19	36712	160513_QHF_FH_JSI11Kac_6	188.84	158.41			0.35936	0.37263	65.418	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23981	0.23463	NaN	1	1	Median	0.53852	0.59179	NaN	1	1	Median	69746000	39281000	30465000	0	0	0	0	0	0	60351000	32418000	27933000	9394300	6862700	2531600	22412	880	21221	139142;139143;139144	188695;188696;188697	188696	605		3	
HKFSDVTGK	2	Acetyl (K)	1059.5349	0.53490874	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.623	16.52	2	0.035809	10085	160513_QHF_FH_JSI11Kac_6	56.258	35.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6576200	6576200	0	0	0	0	0	0	0	6576200	6576200	0	0	0	0	22413	5161	21222	139145	188698	188698			1	
HKLDVTSVEDYK	2	Unmodified	1432.7198	0.71980898	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.69		9	8						5	6	4	6	6	38.325	36.008	2;3	6.259E-06	29966	160511_QHF_FH_JSI12i_3	116.51	104.53			1.0036	1.0188	64.671	20	13	Median	1.4864	1.2743	51.543	5	3	Median	0.63912	0.77828	47.137	4	1	Median	1.0879	1.011	96.156	5	5	Median	0.85781	0.94436	69.359	6	4	Median	5550500000	3309800000	2240700000	125350000	53714000	71633000	323060000	164850000	158210000	1040800000	548410000	492440000	4061200000	2542800000	1518400000	22414	1630	21223	139146;139147;139148;139149;139150;139151;139152;139153;139154;139155;139156;139157;139158;139159;139160;139161;139162;139163;139164;139165;139166;139167	188699;188700;188701;188702;188703;188704;188705;188706;188707;188708;188709;188710;188711;188712;188713;188714;188715;188716;188717;188718;188719;188720;188721;188722;188723;188724;188725;188726	188720			28	
HKLDVTSVEDYK	2	Acetyl (K)	1474.7304	0.73037367	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								5			2	3		57.119	46.37	2;3	1.5399E-06	25517	160513_QHF_FH_JSI11Kac_5	118.48	98.722			3.937	3.8795	257.74	5	5	Median	NaN	NaN	NaN	0	0	Median	2.552	3.0403	347.31	2	2	Median	0.0915	0.089795	253.57	3	3	Plateau	NaN	NaN	NaN	0	0	Median	33697000	14690000	19007000	0	0	0	6107700	2334900	3772900	27589000	12355000	15234000	0	0	0	22415	1630	21223	139168;139169;139170;139171;139172	188727;188728;188729;188730;188731	188729	1646		5	
HKPAFTEEDVLNIFPVVK	2	Unmodified	2082.115	0.11497676	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	91.972	91.939	3;4	7.4102E-05	79751	160511_QHF_FH_JSI12i_3	65.107	54.91			1.1605	1.147	21.785	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4881	1.4078	NaN	1	0	Median	1.0724	1.0481	19.191	3	2	Median	240540000	119240000	121290000	0	0	0	0	0	0	11653000	4676400	6976200	228880000	114570000	114320000	22416	485	21224	139173;139174;139175;139176;139177	188732;188733;188734;188735;188736;188737;188738	188734			7	
HKPDFISLFK	2	Unmodified	1230.6761	0.67609367	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	1	2	3	66.33	65.401	2;3	1.1357E-07	53985	160511_QHF_FH_JSI12i_3	113.63	103.94			1.0945	0.90018	63.149	7	2	Median	1.0945	0.90018	67.926	3	2	Plateau	0.60534	0.69352	NaN	1	0	Median	1.2668	1.197	NaN	1	0	Median	1.3823	1.405	12	2	0	Median	462940000	198090000	264850000	54889000	33363000	21527000	32160000	21101000	11059000	124580000	48717000	75864000	251310000	94909000	156400000	22417	3862	21225	139178;139179;139180;139181;139182;139183;139184;139185;139186	188739;188740;188741;188742;188743;188744;188745;188746;188747;188748	188746			10	
HKPGGGDVK	2	Unmodified	893.47191	0.47191456	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		1.2143	1.2143	3	0.010226	572	160511_QHF_FH_JSI11i_3	35.541	25.127			0.41875	0.39765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41875	0.39765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	251180000	148260000	102920000	0	0	0	0	0	0	251180000	148260000	102920000	0	0	0	22418	1298	21226	139187	188749	188749			1	
HKPLLIDMNK	2	Unmodified	1207.6747	0.67471346	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			3							1			2	32.371	31.842	3	0.00017999	27026	160511_QHF_FH_JSI9i_3	74.962	69.648			3.4399	2.4684	181.21	3	2	Plateau	1.0292	0.83377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2076	1.2087	254.47	2	2	Median	268120000	86700000	181420000	91223000	27817000	63407000	0	0	0	0	0	0	176900000	58884000	118010000	22419	2636	21227	139188;139189;139190	188750;188751;188752	188750			3	
HKPNVVSVEK	2	Unmodified	1135.635	0.63495714	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		11.134	11.134	3	0.054304	8709	160511_QHF_FH_JSI11i_3	29.805	23.484			1.788	1.6713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.788	1.6713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49790000	22914000	26876000	0	0	0	0	0	0	49790000	22914000	26876000	0	0	0	22420	1230	21228	139191	188753	188753			1	
HKSETDTSLIR	1	Acetyl (K)	1327.6732	0.67319314	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	30.706	21.403	3	0.026621	12157	160513_QHF_FH_JSI12Kac_5	41.401	33.645			0.5398	0.57358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5398	0.57358	NaN	1	1	Median	2184000	1929100	254830	0	0	0	0	0	0	0	0	0	2184000	1929100	254830	22421	1494	21229	139192	188754	188754	1508		1	
HKSIELFYK	2	Acetyl (K)	1205.6445	0.64445919	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.122	52.415	2	0.0004295	28374	160513_QHF_FH_JSI11Kac_6	92.538	72.777			0.16697	0.16298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16697	0.16298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5844200	5274600	569660	0	0	0	0	0	0	5844200	5274600	569660	0	0	0	22422	2094	21230	139193	188755	188755	2196		1	
HKWSVLK	2	Acetyl (K)	938.53379	0.53378653	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		42.422	32.825	2	0.019051	17981	160513_QHF_FH_JSI11Kac_6	83.265	52.653			0.2696	0.2666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2696	0.2666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15748000	12481000	3266900	0	0	0	0	0	0	15748000	12481000	3266900	0	0	0	22423	905	21231	139194	188756	188756	661		1	
HLAAALENLNK	1	Unmodified	1192.6564	0.65642086	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	40.469	40.329	2;3	4.9688E-06	35125	160511_QHF_FH_JSI11i_3	123.35	94.206			15.388	14.419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15.388	14.419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118900000	79553000	39343000	0	0	0	0	0	0	41423000	2080100	39343000	77473000	77473000	0	22424	2302	21232	139195;139196;139197;139198	188757;188758;188759;188760	188757			4	
HLAAVEER	0	Unmodified	923.48248	0.48247924	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	11.028	10.617	2	7.5822E-06	8635	160511_QHF_FH_JSI10i_2	122.74	18.376			14.583	12.544	225.5	5	5	Median	3.6338	3.1221	196.68	2	2	Median	25.567	30.35	NaN	1	1	Median	1.928	1.9638	335.14	2	2	Median	NaN	NaN	NaN	0	0	Median	437190000	214750000	222440000	130020000	49564000	80457000	49689000	3891400	45798000	257480000	161290000	96184000	0	0	0	22425	3685;3907	21233	139199;139200;139201;139202;139203;139204;139205	188761;188762;188763;188764;188765;188766;188767	188767			7	
HLAEEYGER	0	Unmodified	1102.5043	0.5043369	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	12.451	11.91	2	0.00055069	9118	160511_QHF_FH_JSI11i_2	88.819	63.925			0.26065	0.26897	27.082	4	4	Median	0.29989	0.26375	NaN	1	1	Median	0.22654	0.27429	NaN	1	1	Median	0.18909	0.1888	NaN	1	1	Median	0.31901	0.36579	NaN	1	1	Median	224910000	162750000	62160000	27485000	19146000	8339300	62821000	44836000	17986000	86783000	69374000	17409000	47819000	29393000	18426000	22426	2902	21234	139206;139207;139208;139209	188768;188769;188770;188771	188770			4	
HLAEHSPYYEAMK	1	Unmodified	1574.7188	0.71876312	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.75	5.93		2	1						1		1	1	2	36.026	34.682	3	2.5345E-05	29480	160511_QHF_FH_JSI12i_2	70.563	66.095			1.4993	1.653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4993	1.653	NaN	1	0	Median	59295000	24497000	34798000	0	0	0	0	0	0	0	0	0	59295000	24497000	34798000	22427	2328	21235	139210;139211;139212;139213	188772;188773;188774;188775	188773			4	
HLAETAEEK	1	Unmodified	1026.4982	0.49818889	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	7.5849	6.9832	2	0.0010356	4818	160511_QHF_FH_JSI12i_2	81.548	47.751			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13665000	0	13665000	0	0	0	0	0	0	0	0	0	13665000	0	13665000	22428	3643	21236	139214;139215;139216;139217	188776;188777;188778;188779	188776			4	
HLAEVLER	0	Unmodified	965.52943	0.52942943	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.375	26.375	2	0.0019679	22599	160511_QHF_FH_JSI11i_3	94.114	31.397			1.2292	1.1806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2292	1.1806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55085000	26853000	28232000	0	0	0	0	0	0	55085000	26853000	28232000	0	0	0	22429	2988	21237	139218	188780	188780			1	
HLAGEVAK	1	Unmodified	823.4552	0.45520186	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.78	6.53		5	1						3		3	4	2	9.0709	6.2738	2	0.0016552	5723	160511_QHF_FH_JSI12i_2	100.19	29.276			0.14782	0.15802	311.9	8	8	Median	NaN	NaN	NaN	0	0	Median	0.97832	1.2098	325.86	2	2	Median	0.1011	0.098654	328.75	4	4	Median	0.8155	0.90621	465.33	2	2	Median	2189300000	989610000	1199700000	0	0	0	636550000	345610000	290930000	1225500000	619580000	605950000	327250000	24420000	302830000	22430	2370	21238	139219;139220;139221;139222;139223;139224;139225;139226;139227	188781;188782;188783;188784;188785;188786;188787;188788;188789	188782			9	
HLAGLFNSITSFYHPSNNGR	0	Unmodified	2231.0872	0.087198884	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.976	76.383	3	1.1087E-05	42122	160513_QHF_FH_JSI10Kac_6	110.77	95.515			0.098416	0.11562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.098416	0.11562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29956000	28713000	1243700	0	0	0	29956000	28713000	1243700	0	0	0	0	0	0	22431	2588	21239	139228	188790	188790			1	
HLAGLGLTEAIDK	1	Unmodified	1336.7351	0.73506511	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.93		16	13						10	9	10	8	12	61.522	58.662	2;3	1.9622E-33	51411	160511_QHF_FH_JSI11i_2	240.08	215.23			3.1875	3.3181	288.58	32	32	Median	4.6755	3.9662	247.82	7	7	Median	0.62851	0.74193	275.93	8	8	Median	3.3093	3.3978	300.82	7	7	Median	0.8155	0.87622	341.69	10	10	Median	6792200000	3288800000	3503400000	974620000	533990000	440630000	1467300000	935610000	531740000	1943200000	601300000	1341900000	2407100000	1217900000	1189200000	22432	1706	21240	139229;139230;139231;139232;139233;139234;139235;139236;139237;139238;139239;139240;139241;139242;139243;139244;139245;139246;139247;139248;139249;139250;139251;139252;139253;139254;139255;139256;139257;139258;139259;139260;139261;139262;139263;139264;139265;139266;139267	188791;188792;188793;188794;188795;188796;188797;188798;188799;188800;188801;188802;188803;188804;188805;188806;188807;188808;188809;188810;188811;188812;188813;188814;188815;188816;188817;188818;188819;188820;188821;188822;188823;188824;188825;188826;188827;188828;188829;188830;188831;188832;188833;188834;188835;188836;188837;188838;188839;188840;188841;188842;188843;188844	188820			54	
HLAGLGLTEAIDKNK	2	Acetyl (K)	1620.8835	0.88352026	1706	P50454	SERPINH1	Serpin H1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.817	62.397	3	1.3289E-06	33820	160513_QHF_FH_JSI11Kac_6	109.44	82.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22433	1706	21241	139268	188845	188845	1717		1	
HLAGSASPSVVLITKPTTVK	2	Unmodified	2005.1572	0.15717593	5607	Q9Y426	C2CD2	C2 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		53.564	52.52	3	2.2699E-05	46332	160511_QHF_FH_JSI11i_3	87.554	70.629			0.71167	0.6136	139.42	2	2	Median	2.0298	1.6445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.24952	0.22895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74277000	50133000	24143000	25695000	3781700	21913000	20159000	20159000	0	28423000	26193000	2230300	0	0	0	22434	5607	21242	139269;139270;139271	188846;188847;188848;188849	188846			4	
HLAGVPLIGWVLR	0	Unmodified	1429.8558	0.85578937	3663	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	3	1		90.944	83.562	2;3	1.8728E-05	48019	160513_QHF_FH_JSI10Kac_6	102.42	87.035			1.2461	1.4391	155.55	3	3	Plateau	9.1055	7.7978	NaN	1	1	Median	1.2461	1.4391	171.33	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148920000	78989000	69927000	20079000	666410	19412000	110020000	59502000	50515000	18821000	18821000	0	0	0	0	22435	3663	21243	139272;139273;139274;139275;139276	188850;188851;188852;188853;188854	188852			5	
HLAILGAGLMGAGIAQVSVDK	1	Unmodified	2020.1139	0.11393091	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			3							2			1	97.41	97.25	3	1.9944E-14	83797	160511_QHF_FH_JSI12i_3	123.19	103.9			0.87054	0.82364	132.06	2	2	Median	2.405	2.0955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31511	0.32374	NaN	1	1	Median	30800000	20122000	10678000	5090800	688400	4402400	0	0	0	0	0	0	25709000	19433000	6275900	22436	1507	21244	139277;139278;139279	188855;188856;188857	188857			3	
HLAILSK	1	Unmodified	780.48577	0.48577371	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		2	1	29.43	29.069	2	0.012945	24651	160511_QHF_FH_JSI11i_3	72.138	23.965			8.5241	7.5138	162.71	2	2	Median	2.8473	2.3779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25.519	23.743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	505980000	339170000	166810000	101510000	27391000	74123000	0	0	0	214360000	121670000	92691000	190100000	190100000	0	22437	171	21245	139280;139281;139282;139283	188858;188859;188860;188861	188858			4	
HLALNLQEK	1	Unmodified	1064.5978	0.59784335	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		36.038	35.347	2	0.00012297	30022	160511_QHF_FH_JSI11i_2	109.48	81.056			0.01258	0.013833	16.87	2	2	Median	NaN	NaN	NaN	0	0	Median	0.010093	0.012278	NaN	1	1	Median	0.01568	0.015586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91855000	90448000	1406700	0	0	0	49086000	48477000	609470	42769000	41972000	797260	0	0	0	22438	2560	21246	139284;139285	188862;188863	188862			2	
HLALSQPFSFTQQDMPK	1	Unmodified	1973.9669	0.96693232	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	75.592	75.324	3	5.8968E-11	67105	160511_QHF_FH_JSI11i_3	145.94	127.07			0.47907	0.44534	135.14	5	5	Median	0.18322	0.16033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99986	0.93505	104.9	2	2	Median	1.0954	1.0953	186.11	2	2	Median	325090000	164320000	160770000	12463000	8308400	4154900	0	0	0	154380000	78816000	75562000	158250000	77195000	81052000	22439	4724	21247	139286;139287;139288;139289;139290	188864;188865;188866;188867;188868	188864			5	
HLALSSSK	1	Unmodified	841.46577	0.46576654	3025	Q68D10	SPTY2D1	Protein SPT2 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.648	10.743	2	0.050268	8028	160511_QHF_FH_JSI12i_3	45.972	20.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25667000	25667000	0	0	0	0	0	0	0	0	0	0	25667000	25667000	0	22440	3025	21248	139291	188869	188869			1	
HLAPPGLHPVPGGVFPVPPAAVVLMK	1	Unmodified	2596.4716	0.47159097	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.14	101.15	4	2.6048E-14	87747	160511_QHF_FH_JSI12i_3	93.837	92.091			1.1403	1.1032	15.381	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3035	1.23	NaN	1	0	Median	0.99744	0.98952	NaN	1	0	Median	531780000	280010000	251770000	0	0	0	0	0	0	194190000	78807000	115390000	337580000	201200000	136380000	22441	2338	21249	139292;139293	188870;188871	188871			2	
HLAQASQELQ	0	Unmodified	1123.5622	0.56218613	3601	Q8NBP7	PCSK9	Proprotein convertase subtilisin/kexin type 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	20.216	19.494	2	0.00026595	16055	160511_QHF_FH_JSI11i_2	91.318	78.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15231000	0	15231000	0	0	0	0	0	0	10127000	0	10127000	5103800	0	5103800	22442	3601	21250	139294;139295	188872;188873	188873			2	
HLAQLMESIPHSPGPTR	0	Unmodified	1869.952	0.95195096	5112	Q9NXS2	QPCTL	Glutaminyl-peptide cyclotransferase-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				60.486	58.962	3	0.0025019	48325	160511_QHF_FH_JSI9i_3	50.053	39.418			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12375000	0	12375000	12375000	0	12375000	0	0	0	0	0	0	0	0	0	22443	5112	21251	139296;139297	188874;188875	188874			2	
HLAQVGDSMDR	0	Unmodified	1227.5666	0.56661958	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	19.304	19.317	2	0.00060535	15668	160511_QHF_FH_JSI11i_2	75.378	66.164			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12460000	12460000	0	0	0	0	0	0	0	0	0	0	12460000	12460000	0	22444	1868	21252	139298;139299	188876;188877	188876			2	
HLASDAIINENYDYLK	1	Unmodified	1877.9159	0.9159426	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	66.135	65.236	2	1.1031E-16	57564	160511_QHF_FH_JSI9i_2	121.08	80.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88619000	40329000	48290000	7542900	0	7542900	25748000	13887000	11861000	29420000	15017000	14402000	25908000	11425000	14484000	22445	1790	21253	139300;139301;139302;139303;139304;139305;139306;139307	188878;188879;188880;188881;188882;188883;188884;188885;188886	188881			9	
HLATGNYLAAEENPSYKGDASDPK	2	Unmodified	2547.1878	0.18776037	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		41.824	41.824	3	0.0023675	36861	160511_QHF_FH_JSI11i_3	39.647	25.916			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12202000	0	12202000	0	0	0	0	0	0	12202000	0	12202000	0	0	0	22446	2547	21254	139308	188887	188887			1	
HLATSDMLAAASK	1	Unmodified	1314.6602	0.66018561	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	42.482	41.549	2	3.0011E-05	35494	160511_QHF_FH_JSI12i_2	117.98	110.05			0.10368	0.12652	236.38	5	5	Median	NaN	NaN	NaN	0	0	Median	0.10368	0.12652	NaN	1	1	Median	0.65039	0.64904	291.22	2	2	Median	0.6561	0.73301	339.9	2	2	Median	247590000	133280000	114310000	0	0	0	39295000	34314000	4980700	134220000	57764000	76451000	74078000	41201000	32877000	22447	3248	21255	139309;139310;139311;139312;139313;139314;139315	188888;188889;188890;188891;188892;188893;188894	188888			7	
HLAVEWGPQNIR	0	Unmodified	1418.7419	0.74188183	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	54.678	54.436	2	0.013211	46757	160511_QHF_FH_JSI12i_3	45.368	34.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22448	5001	21256	139316	188895	188895			1	
HLAVHPPESLAVVANAK	1	Unmodified	1751.9683	0.96825295	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.968	55.721	3	0.0022636	47848	160511_QHF_FH_JSI12i_3	50.653	40.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11124000	11124000	0	0	0	0	0	0	0	0	0	0	11124000	11124000	0	22449	233	21257	139317	188896	188896			1	
HLAVLNFPK	1	Unmodified	1037.6022	0.60220045	391	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	55.368	55.247	2;3	0.00022563	47563	160511_QHF_FH_JSI12i_3	100.19	75.265			0.071479	0.072959	238.18	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5766	0.55128	293.59	2	2	Median	0.071479	0.072959	NaN	1	1	Median	58673000	42678000	15994000	0	0	0	0	0	0	25423000	18823000	6599400	33250000	23855000	9394800	22450	391	21258	139318;139319;139320;139321;139322	188897;188898;188899;188900;188901	188900			5	
HLAVMPHPER	0	Unmodified	1185.6077	0.60769653	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							3	2			25.043	23.725	3	0.0012212	19924	160511_QHF_FH_JSI10i_3	51.436	43.869			0.30903	0.27254	212.52	4	3	Median	0.38263	0.30984	244.7	3	2	Median	0.20565	0.23973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112840000	63448000	49391000	88064000	43598000	44466000	24775000	19850000	4924800	0	0	0	0	0	0	22451	241	21259	139323;139324;139325;139326;139327	188902;188903;188904;188905;188906	188902			5	
HLAWLLHSGVMGAVVAPLTILGGPLLIR	0	Unmodified	2903.6935	0.69354542	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			100.67	94.953	3;4	1.081E-12	56033	160513_QHF_FH_JSI10Kac_6	134.56	123.85			0.78229	0.93999	59.122	3	3	Median	NaN	NaN	NaN	0	0	Median	0.78229	0.93999	59.122	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	362080000	172870000	189210000	0	0	0	362080000	172870000	189210000	0	0	0	0	0	0	22452	4694	21260	139328;139329;139330	188907;188908;188909	188909			3	
HLCAVYYNK	1	Unmodified	1166.5543	0.55426398	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3		2	4	1	29.084	24.717	2	0.00014278	20863	160511_QHF_FH_JSI11i_2	94.262	73.36			1.9705	1.9084	132.83	6	6	Median	NaN	NaN	NaN	0	0	Median	1.7205	2.0464	237	2	2	Median	1.2671	1.1413	120.09	3	3	Median	3.0643	3.1912	NaN	1	1	Median	122660000	42740000	79922000	0	0	0	10671000	6220400	4450100	71637000	31376000	40261000	40355000	5143800	35211000	22453	4982	21261	139331;139332;139333;139334;139335;139336;139337	188910;188911;188912;188913;188914;188915;188916	188913			7	
HLCELLAQQF	0	Unmodified	1257.6176	0.61759251	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	73.847	72.793	2	0.015891	63192	160511_QHF_FH_JSI12i_2	50.878	39.388			2.8583	3.1272	99.452	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4372	3.4639	NaN	1	1	Median	1.2548	1.3574	118.03	2	2	Median	69373000	28532000	40841000	0	0	0	0	0	0	24060000	6302100	17758000	45313000	22230000	23083000	22454	726	21262	139338;139339;139340	188917;188918;188919	188918			3	
HLCEPGADGAETFADGVPR	0	Unmodified	1997.8901	0.89013856	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	no	no	0	0	0	0				By MS/MS	2	0		1											1	53.515	52.13	3	4.3906E-05	44629	160511_QHF_FH_JSI12i_2	77.221	72.969			6.7855	7.3088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.7855	7.3088	NaN	1	1	Median	14377000	823630	13554000	0	0	0	0	0	0	0	0	0	14377000	823630	13554000	22455	2578	21263	139341	188920	188920			1	
HLCQQLQAEQAAAEK	1	Unmodified	1723.8312	0.83116712	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									3	3	27.636	27.609	2;3	1.2175E-06	23042	160511_QHF_FH_JSI12i_3	144.47	119.04			4.3903	4.037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3903	4.037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106700000	11715000	94989000	0	0	0	0	0	0	51098000	5383200	45715000	55606000	6331700	49274000	22456	2587	21264	139342;139343;139344;139345;139346;139347	188921;188922;188923;188924;188925;188926	188925			6	
HLDALLR	0	Unmodified	836.48684	0.48683634	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	36.425	35.537	2	0.023579	30124	160511_QHF_FH_JSI11i_2	58.604	3.8179			0.37801	0.39418	62.064	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25469	0.25415	NaN	1	1	Median	0.56104	0.61134	NaN	1	1	Median	89426000	61471000	27955000	0	0	0	0	0	0	51352000	39465000	11886000	38074000	22006000	16069000	22457	3521	21265	139348;139349	188927;188928	188928			2	
HLDGEEDGSSDQSQASGTTGGR	0	Unmodified	2189.9057	0.90572486	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	16									4	4	4	4	11.359	10.96	2;3	3.0258E-48	8844	160511_QHF_FH_JSI12i_1	222.6	219.41			0.78718	0.72904	67.304	8	8	Median	0.84027	0.69885	59.088	4	4	Median	0.4683	0.55401	116.61	2	2	Median	0.53752	0.51247	NaN	1	1	Median	1.3652	1.4661	NaN	1	1	Median	501900000	281590000	220310000	113070000	56592000	56476000	152510000	100770000	51748000	110340000	52663000	57680000	125980000	71573000	54405000	22458	5436	21266	139350;139351;139352;139353;139354;139355;139356;139357;139358;139359;139360;139361;139362;139363;139364;139365	188929;188930;188931;188932;188933;188934;188935;188936;188937;188938;188939;188940;188941;188942;188943;188944	188935			16	
HLDLSNVAGYK	1	Unmodified	1215.6248	0.62478638	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	48.87	47.472	2	3.4533E-06	40592	160511_QHF_FH_JSI12i_2	117.02	78.247			0.19716	0.21904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19716	0.21904	NaN	1	1	Median	73790000	57969000	15821000	0	0	0	0	0	0	0	0	0	73790000	57969000	15821000	22459	5435	21267	139366;139367;139368	188945;188946;188947	188945			3	
HLDQIIPR	0	Unmodified	990.56106	0.56106391	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		37.206	36.354	2;3	0.0032828	30758	160511_QHF_FH_JSI11i_2	79.713	56.67			4.3543	4.3552	78.131	3	3	Median	15.49	13.908	NaN	1	1	Median	2.5876	3.1464	NaN	1	1	Median	4.3543	4.3552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	196640000	57265000	139380000	48024000	11524000	36500000	60318000	20168000	40151000	88298000	25573000	62725000	0	0	0	22460	3860	21268	139369;139370;139371;139372	188948;188949;188950;188951	188949			4	
HLDSSSNERPDISSIQR	0	Unmodified	1939.9348	0.93478057	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			31.479	30.489	3	0.00031705	26702	160511_QHF_FH_JSI10i_2	71.692	60.837			2.2583	2.3022	9.5057	2	2	Median	2.5317	2.1525	NaN	1	1	Median	2.0145	2.4622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66712000	21297000	45415000	34417000	9549800	24867000	32296000	11748000	20548000	0	0	0	0	0	0	22461	1690	21269	139373;139374	188952;188953	188953			2	
HLEAQGTSLPK	1	Unmodified	1179.6248	0.62478638	3077	Q6NW34	C3orf17	Uncharacterized protein C3orf17	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			22.601	21.731	2	0.01032	18743	160511_QHF_FH_JSI10i_2	47.198	22.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22462	3077	21270	139375	188954	188954			1	
HLEEIVEK	1	Unmodified	995.52876	0.52876073	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	25.39	24.53	2	0.0010125	20800	160511_QHF_FH_JSI11i_2	114.89	44.896			7.3328	8.184	239.45	6	6	Median	14.473	12.955	NaN	1	1	Median	8.1775	10.087	NaN	1	1	Median	1.423	1.4474	215.43	2	2	Median	0.86601	0.95847	411.56	2	2	Median	485880000	214290000	271590000	48136000	4463300	43672000	46778000	7927200	38851000	284760000	140840000	143910000	106210000	61057000	45154000	22463	5213	21271	139376;139377;139378;139379;139380;139381	188955;188956;188957;188958;188959;188960	188959			6	
HLEFYLLWTHK	1	Unmodified	1485.7769	0.77687035	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.447	74.851	3	0.00096557	41059	160513_QHF_FH_JSI10Kac_6	66.262	49.597			0.25939	0.29697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25939	0.29697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84508000	63166000	21342000	0	0	0	84508000	63166000	21342000	0	0	0	0	0	0	22464	2647	21272	139382	188961	188961			1	
HLEGLSEEAIMELNLPTGIPIVYELDK	1	Unmodified	3022.5573	0.55729025	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.57	102.46	3	3.4816E-09	90362	160511_QHF_FH_JSI11i_2	85.185	79.525			0.92186	0.92718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92186	0.92718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74536000	37992000	36544000	0	0	0	0	0	0	74536000	37992000	36544000	0	0	0	22465	1144	21273	139383	188962	188962			0	
HLEIIYAINQR	0	Unmodified	1368.7514	0.75138388	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									5		3	2		68.102	59.585	2;3	0.00012771	32553	160513_QHF_FH_JSI10Kac_6	87.298	69.931			0.12557	0.12682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12557	0.12682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41768000	14837000	26931000	0	0	0	29415000	8297300	21118000	12353000	6539300	5813400	0	0	0	22466	992	21274	139384;139385;139386;139387;139388	188963;188964;188965;188966;188967	188966			5	
HLEINPDHPIVETLR	0	Unmodified	1781.9424	0.94243213	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	5.07		52	25						15	17	22	26	27	63.04	61.046	2;3;4	1.8948E-34	51391	160511_QHF_FH_JSI10i_2	237.3	221.41			0.72257	0.82223	138.5	77	57	Median	0.99747	0.85033	75.206	15	11	Median	0.67746	0.78037	137.6	21	17	Median	0.81939	0.82223	154.78	23	17	Median	0.72825	0.80314	161.94	18	12	Median	55596000000	24068000000	31528000000	3493400000	1453300000	2040200000	10124000000	4335000000	5788600000	22316000000	9873900000	12442000000	19663000000	8405300000	11257000000	22467	898	21275	139389;139390;139391;139392;139393;139394;139395;139396;139397;139398;139399;139400;139401;139402;139403;139404;139405;139406;139407;139408;139409;139410;139411;139412;139413;139414;139415;139416;139417;139418;139419;139420;139421;139422;139423;139424;139425;139426;139427;139428;139429;139430;139431;139432;139433;139434;139435;139436;139437;139438;139439;139440;139441;139442;139443;139444;139445;139446;139447;139448;139449;139450;139451;139452;139453;139454;139455;139456;139457;139458;139459;139460;139461;139462;139463;139464;139465;139466;139467;139468;139469;139470;139471;139472;139473;139474;139475;139476;139477;139478;139479;139480	188968;188969;188970;188971;188972;188973;188974;188975;188976;188977;188978;188979;188980;188981;188982;188983;188984;188985;188986;188987;188988;188989;188990;188991;188992;188993;188994;188995;188996;188997;188998;188999;189000;189001;189002;189003;189004;189005;189006;189007;189008;189009;189010;189011;189012;189013;189014;189015;189016;189017;189018;189019;189020;189021;189022;189023;189024;189025;189026;189027;189028;189029;189030;189031;189032;189033;189034;189035;189036;189037;189038;189039;189040;189041;189042;189043;189044;189045;189046;189047;189048;189049;189050;189051;189052;189053;189054;189055;189056;189057;189058;189059;189060;189061;189062;189063;189064;189065;189066;189067;189068;189069;189070;189071;189072;189073;189074;189075;189076;189077;189078;189079;189080;189081;189082;189083;189084;189085;189086;189087;189088;189089;189090;189091;189092;189093;189094;189095;189096;189097;189098;189099;189100;189101;189102;189103;189104;189105;189106;189107;189108;189109;189110;189111;189112;189113;189114;189115;189116;189117;189118;189119;189120;189121;189122;189123;189124;189125;189126;189127;189128;189129;189130;189131;189132;189133	189078			164	
HLEINPDHSIIETLR	0	Unmodified	1785.9373	0.93734675	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.06		47	19						7	19	16	20	18	69.024	67.435	2;3;4	1.1607E-83	57235	160511_QHF_FH_JSI11i_3	183.6	167.96			0.90762	0.86509	96.083	62	36	Median	1.0632	0.89483	33.715	17	8	Median	0.77039	0.90816	75.527	13	7	Median	0.84738	0.84906	129.57	16	11	Median	0.7235	0.73959	122.06	16	10	Median	14564000000	6372500000	8191400000	1864000000	910610000	953390000	1821800000	819420000	1002400000	4521600000	1810600000	2711000000	6356500000	2831900000	3524600000	22468	880	21276	139481;139482;139483;139484;139485;139486;139487;139488;139489;139490;139491;139492;139493;139494;139495;139496;139497;139498;139499;139500;139501;139502;139503;139504;139505;139506;139507;139508;139509;139510;139511;139512;139513;139514;139515;139516;139517;139518;139519;139520;139521;139522;139523;139524;139525;139526;139527;139528;139529;139530;139531;139532;139533;139534;139535;139536;139537;139538;139539;139540;139541;139542;139543;139544;139545;139546;139547;139548;139549;139550;139551;139552;139553	189134;189135;189136;189137;189138;189139;189140;189141;189142;189143;189144;189145;189146;189147;189148;189149;189150;189151;189152;189153;189154;189155;189156;189157;189158;189159;189160;189161;189162;189163;189164;189165;189166;189167;189168;189169;189170;189171;189172;189173;189174;189175;189176;189177;189178;189179;189180;189181;189182;189183;189184;189185;189186;189187;189188;189189;189190;189191;189192;189193;189194;189195;189196;189197;189198;189199;189200;189201;189202;189203;189204;189205;189206;189207;189208;189209;189210;189211;189212;189213;189214;189215;189216;189217;189218;189219;189220;189221;189222;189223;189224;189225;189226;189227;189228;189229;189230;189231;189232;189233;189234;189235;189236;189237;189238;189239;189240	189151			101	
HLEQQAEK	1	Unmodified	981.48796	0.48795855	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	5.2166	4.8246	2	4.1972E-14	2668	160511_QHF_FH_JSI12i_2	147.51	53.206			0.31115	0.32154	24.337	5	5	Median	0.38785	0.32925	32.399	2	2	Median	0.26385	0.32154	NaN	1	1	Median	0.45166	0.46423	NaN	1	1	Median	0.24971	0.28605	NaN	1	1	Median	639640000	433120000	206520000	207110000	128580000	78527000	115220000	94177000	21038000	185050000	105090000	79954000	132270000	105260000	27002000	22469	3172	21277	139554;139555;139556;139557;139558;139559	189241;189242;189243;189244;189245;189246	189242			6	
HLETGGQK	1	Unmodified	868.44028	0.44028008	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	4.7609	4.325	2	0.002592	2150	160511_QHF_FH_JSI12i_2	86.833	30.711			0.36695	0.40692	110.82	4	2	Median	NaN	NaN	NaN	0	0	Median	0.52235	0.63958	NaN	1	0	Median	0.25779	0.25889	NaN	1	1	Median	0.54629	0.60767	176.49	2	1	Median	535040000	379430000	155610000	0	0	0	136180000	87298000	48878000	197970000	156450000	41525000	200890000	135690000	65208000	22470	3838	21278	139560;139561;139562;139563	189247;189248;189249	189248			3	
HLEVLNVSENK	1	Unmodified	1280.6725	0.67246486	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.038	38.13	2	0.00013413	32631	160511_QHF_FH_JSI11i_2	95.573	64.5			4.5699	4.8476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5699	4.8476	NaN	1	1	Median	60993000	4391500	56602000	0	0	0	0	0	0	34434000	0	34434000	26559000	4391500	22168000	22471	2712	21279	139564;139565	189250;189251	189251			2	
HLFAILGGSEGK	1	Unmodified	1227.6612	0.66117189	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			9						6	2	6	3	4	61.912	57.996	2;3	1.5912E-06	31967	160513_QHF_FH_JSI10Kac_6	113.93	69.479			9.1688	8.7306	200.4	14	14	Median	18.524	15.116	40.527	2	2	Median	0.56023	0.66932	224.87	6	6	Median	7.0782	6.7159	218.62	3	3	Median	11.931	13.183	168.2	3	3	Median	1229100000	374020000	855110000	227580000	12332000	215250000	439420000	224030000	215390000	203220000	23180000	180040000	358910000	114480000	244440000	22472	3860	21280	139566;139567;139568;139569;139570;139571;139572;139573;139574;139575;139576;139577;139578;139579;139580	189252;189253;189254;189255;189256;189257;189258;189259;189260;189261;189262;189263;189264;189265;189266;189267;189268;189269;189270;189271	189271			20	
HLFCLYVVSK	1	Unmodified	1264.6638	0.66381443	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	1	2	70.121	63.776	2	2.7278E-11	33026	160513_QHF_FH_JSI12Kac_6	147.51	124.36			4.4425	4.3158	233.27	5	5	Median	NaN	NaN	NaN	0	0	Median	0.59986	0.70544	292.99	2	2	Median	4.4425	4.3158	NaN	1	1	Median	0.54467	0.55767	318.6	2	2	Median	339890000	161970000	177920000	30905000	30905000	0	107450000	72900000	34554000	69234000	13425000	55809000	132300000	44744000	87552000	22473	1704	21281	139581;139582;139583;139584;139585;139586;139587;139588	189272;189273;189274;189275;189276;189277;189278;189279	189277			8	
HLFENSR	0	Unmodified	901.44061	0.44061443	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	10.652	10.386	2	0.011657	7593	160511_QHF_FH_JSI12i_3	76.847	37.628			0.087132	0.095456	16.807	4	4	Median	NaN	NaN	NaN	0	0	Median	0.087132	0.10087	10.753	2	2	Median	0.079787	0.073089	NaN	1	1	Median	0.097367	0.097473	NaN	1	1	Median	235540000	217340000	18195000	0	0	0	73562000	67261000	6301100	71660000	68338000	3321300	90315000	81743000	8572700	22474	3605	21282	139589;139590;139591;139592	189280;189281;189282;189283	189283			4	
HLFGQPNSAYDFK	1	Unmodified	1522.7205	0.72047768	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		12	6							3	3	6	6	51.367	50.721	2;3	2.1322E-06	45029	160511_QHF_FH_JSI10i_2	120.68	95.828			0.45486	0.46246	155.55	13	13	Median	0.45463	0.39667	NaN	1	1	Median	0.78191	0.93967	93.613	3	3	Median	0.45486	0.45205	229.01	5	5	Median	0.35481	0.38974	107.53	4	4	Median	530670000	339650000	191030000	19071000	14768000	4302800	110560000	59611000	50949000	219140000	148230000	70914000	181900000	117040000	64862000	22475	679	21283	139593;139594;139595;139596;139597;139598;139599;139600;139601;139602;139603;139604;139605;139606;139607;139608;139609;139610	189284;189285;189286;189287;189288;189289;189290;189291;189292;189293;189294;189295;189296;189297;189298;189299;189300;189301;189302;189303;189304	189299			21	
HLFGQPNSAYDFKTNNPK	2	Acetyl (K)	2119.0123	0.012302606	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.117	55.451	3	0.00020551	30095	160513_QHF_FH_JSI11Kac_6	116.06	108.24			0.47365	0.47246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47365	0.47246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7033100	5142100	1891000	0	0	0	0	0	0	7033100	5142100	1891000	0	0	0	22476	679	21284	139611	189305;189306	189306	339		2	
HLFLLLK	1	Unmodified	882.56911	0.5691094	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	70.68	69.797	2	0.0066142	60284	160511_QHF_FH_JSI12i_3	91.26	24.204			0.04701	0.049007	256.68	3	3	Median	0.04701	0.03886	NaN	1	1	Median	0.043343	0.049007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.6606	3.7046	NaN	1	1	Median	137650000	105970000	31683000	28169000	26599000	1570000	31581000	30690000	890790	0	0	0	77904000	48681000	29223000	22477	557	21285	139612;139613;139614;139615	189307;189308;189309;189310;189311	189311			5	
HLFLTSK	1	Unmodified	844.48069	0.48068833	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.84		2	9						4	4	5	4	2	30.165	27.228	2	0.0060359	22666	160511_QHF_FH_JSI11i_3	94.407	37.897			3.4464	3.3852	279.94	14	14	Median	7.9822	6.6947	250.41	4	4	Median	0.90602	1.0622	290.01	4	4	Median	0.35603	0.34447	274.01	4	4	Median	0.39672	0.39834	499.93	2	2	Median	2754500000	1727800000	1026700000	254390000	33169000	221220000	641260000	383910000	257350000	721090000	517430000	203650000	1137800000	793240000	344520000	22478	4992	21286	139616;139617;139618;139619;139620;139621;139622;139623;139624;139625;139626;139627;139628;139629;139630	189312;189313;189314;189315;189316;189317;189318;189319;189320;189321;189322;189323;189324;189325;189326;189327	189312			16	
HLFLTYLGR	0	Unmodified	1118.6237	0.62366417	4038	Q96E29	MTERF3	Transcription termination factor 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				71.009	62.386	2	0.060663	33191	160513_QHF_FH_JSI9Kac_6	54.712	29.153			1.704	1.3979	NaN	1	0	Median	1.704	1.3979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15226000	4069500	11157000	15226000	4069500	11157000	0	0	0	0	0	0	0	0	0	22479	4038	21287	139631	189328	189328			0	
HLFNLKFAAK	2	Acetyl (K)	1229.6921	0.69207809	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.802	64.446	2	0.0027205	34986	160513_QHF_FH_JSI11Kac_6	80.165	54.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10859000	10859000	0	0	0	0	0	0	0	10859000	10859000	0	0	0	0	22480	3240	21288	139632	189329	189329	2809		1	
HLFTGPVLSK	1	Unmodified	1097.6233	0.62332982	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	45.655	45.047	2	1.5219E-05	38091	160511_QHF_FH_JSI10i_3	112.11	72.461			1.4628	1.5722	242.91	6	6	Median	37.829	30.74	NaN	1	1	Median	0.23118	0.2813	NaN	1	1	Median	1.301	1.2226	278.92	2	2	Median	1.8268	1.8235	315.2	2	2	Median	681730000	271930000	409800000	77658000	1173100	76485000	82201000	66626000	15575000	175150000	59628000	115520000	346720000	144500000	202220000	22481	1104	21289	139633;139634;139635;139636;139637;139638	189330;189331;189332;189333;189334;189335	189332			6	
HLFTPADK	1	Unmodified	927.48142	0.48141661	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		20.613	20.613	2	0.011793	17337	160511_QHF_FH_JSI11i_3	62.659	42.377			0.25265	0.23477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25265	0.23477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31515000	28697000	2817100	0	0	0	0	0	0	31515000	28697000	2817100	0	0	0	22482	5523	21290	139639	189336	189336			1	
HLGGHEGTIPSKV	1	Unmodified	1330.6993	0.69934831	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	1				By MS/MS	3	0			1										1	23.377	23.359	3	0.010007	19219	160511_QHF_FH_JSI12i_3	45.115	36.385			0.27353	0.26804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27353	0.26804	NaN	1	1	Median	45453000	36415000	9038000	0	0	0	0	0	0	0	0	0	45453000	36415000	9038000	22483	3313	21291	139640	189337	189337			1	
HLGGIPWTYAEDAVPTLTPCR	0	Unmodified	2353.1525	0.15250126	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	94.424	94.29	3	1.5143E-24	81176	160511_QHF_FH_JSI12i_3	141.22	132.43			1.2204	1.3662	102.12	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5502	0.66359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7069	2.8125	NaN	1	1	Median	53537000	23138000	30400000	0	0	0	14940000	10520000	4419900	0	0	0	38597000	12617000	25980000	22484	1379	21292	139641;139642;139643	189338;189339;189340;189341	189341			4	
HLGNAIK	1	Unmodified	751.43407	0.43407249	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	8.8609	8.66	2	0.055564	6721	160511_QHF_FH_JSI10i_2	46.663	22.477			0.024848	0.025478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.024848	0.025478	NaN	1	1	Median	113660000	111440000	2217000	0	0	0	49564000	49564000	0	0	0	0	64094000	61877000	2217000	22485	4284	21293	139644;139645	189342;189343	189342			2	
HLGTAGTDVDLR	0	Unmodified	1253.6364	0.6364137	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.053	29.679	2	0.0053784	25111	160511_QHF_FH_JSI11i_2	54.416	36.105			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22486	5696	21294	139646	189344	189344			1	
HLGTLNFGGIR	0	Unmodified	1183.6462	0.64619053	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				55.938	54.372	3	0.00018189	44627	160511_QHF_FH_JSI9i_3	60.167	32.838			0.25823	0.21554	NaN	1	1	Median	0.25823	0.21554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13740000	10426000	3313600	13740000	10426000	3313600	0	0	0	0	0	0	0	0	0	22487	3926	21295	139647	189345	189345			1	
HLGVCISVANNR	0	Unmodified	1338.6827	0.68265239	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	46.64	37.828	3	0.0008905	20772	160513_QHF_FH_JSI10Kac_6	64.792	0			0.408	0.33856	111.67	3	3	Median	0.408	0.33856	NaN	1	1	Median	0.72772	0.8743	137.62	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45862000	25691000	20171000	5614900	4060300	1554600	40248000	21631000	18616000	0	0	0	0	0	0	22488	326	21296	139648;139649;139650;139651;139652;139653	189346;189347;189348;189349;189350;189351	189350			6	
HLGVILPAVMLALK	1	Unmodified	1473.9105	0.91052706	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			15						12	7	8	5	7	98.619	95.029	2;3	5.9199E-97	88407	160511_QHF_FH_JSI12i_3	230.1	190.96			0.35003	0.37865	143.39	10	10	Median	0.21462	0.17588	149.19	3	3	Plateau	0.043851	0.052718	139.25	3	3	Plateau	0.13871	0.13166	301.11	2	2	Median	0.28708	0.28568	53.521	2	2	Median	2102900000	1744900000	358010000	478030000	359570000	118460000	786160000	690240000	95916000	212120000	183280000	28843000	626620000	511840000	114780000	22489	3860	21297	139654;139655;139656;139657;139658;139659;139660;139661;139662;139663;139664;139665;139666;139667;139668;139669;139670;139671;139672;139673;139674;139675;139676;139677;139678;139679;139680	189352;189353;189354;189355;189356;189357;189358;189359;189360;189361;189362;189363;189364;189365;189366;189367;189368;189369;189370;189371;189372;189373;189374;189375;189376;189377;189378	189371			27	
HLGVILPAVMLALK	1	Oxidation (M)	1489.9054	0.90544168	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	8.2	6.37			3						2	3			2	98.573	98.459	2;3	0.0010164	84414	160511_QHF_FH_JSI12i_3	55.261	50.278			0.41016	0.35365	NaN	1	1	Median	0.41016	0.35365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11590000	10633000	956350	5865900	4909500	956350	0	0	0	0	0	0	5723900	5723900	0	22490	3860	21297	139681;139682;139683;139684;139685	189379;189380;189381;189382;189383	189383		2312	5	
HLGYKPEEYK	2	Unmodified	1262.6295	0.62953741	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	21.395	21.396	3	0.040957	17497	160511_QHF_FH_JSI12i_3	21.671	13.567			0.68918	0.69373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68918	0.69373	NaN	1	0	Median	81042000	43810000	37232000	0	0	0	0	0	0	0	0	0	81042000	43810000	37232000	22491	100	21298	139686	189384	189384			1	
HLHAMAFYVVK	1	Unmodified	1314.6907	0.69069788	4044	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	2	1	62.766	53.634	2;3	5.2718E-06	28826	160513_QHF_FH_JSI10Kac_6	103.7	85.891			0.88658	0.90342	89.499	8	5	Median	0.82528	0.70903	78.638	3	2	Plateau	1.2697	1.4918	78.349	2	2	Median	1.137	1.0927	104.01	2	1	Median	1.5295	1.5713	NaN	1	0	Median	216910000	110230000	106670000	75930000	44764000	31167000	63758000	31567000	32191000	58047000	27416000	30631000	19173000	6488200	12684000	22492	4044	21299	139687;139688;139689;139690;139691;139692;139693;139694	189385;189386;189387;189388;189389;189390;189391;189392;189393	189393			9	
HLHAMAFYVVK	1	Oxidation (M)	1330.6856	0.6856125	4044	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			48.116	39.504	3	0.014821	21719	160513_QHF_FH_JSI10Kac_6	44.425	34.992			1.5483	1.78	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5483	1.78	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15790000	6731000	9059200	0	0	0	15790000	6731000	9059200	0	0	0	0	0	0	22493	4044	21299	139695	189394	189394		2382	1	
HLHFTLVK	1	Unmodified	993.57599	0.5759857	855;992	P06737;P11217;P11216	PYGL;PYGM;PYGB	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	1	2	46.427	41.494	3	0.00011868	22154	160513_QHF_FH_JSI10Kac_6	96.253	72.098			0.89174	0.83171	158.62	6	6	Median	0.78962	0.66163	32.2	2	2	Median	0.21043	0.24423	NaN	1	1	Median	9.6164	9.4118	NaN	1	1	Median	2.9491	3.0863	185.29	2	2	Median	168530000	65051000	103470000	57281000	36458000	20824000	13962000	11122000	2840100	11265000	1119300	10146000	86017000	16352000	69665000	22494	855;992	21300	139696;139697;139698;139699;139700;139701	189395;189396;189397;189398;189399;189400	189400			6	
HLHPIQTSFQEATASK	1	Unmodified	1793.906	0.90604662	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	41.968	41.125	2;3	9.7035E-16	34863	160511_QHF_FH_JSI10i_3	160.8	149.11			1.3616	1.3097	65.259	6	5	Median	1.6981	1.3518	NaN	1	1	Median	0.61529	0.72232	79.672	2	1	Median	1.7262	1.6106	NaN	1	1	Median	1.0476	1.063	98.38	2	2	Median	388300000	184950000	203350000	49793000	25449000	24345000	84135000	41820000	42315000	77419000	29845000	47574000	176950000	87836000	89115000	22495	3734	21301	139702;139703;139704;139705;139706;139707;139708	189401;189402;189403;189404;189405;189406;189407;189408	189402			8	
HLHSIMVLK	1	Unmodified	1076.6165	0.6164703	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			14						17	12	5	7	7	46.385	41.192	2;3	1.3446E-06	36054	160511_QHF_FH_JSI9i_3	101.64	98.072			0.47429	0.5377	159.97	23	17	Median	0.66563	0.54587	130.53	7	5	Median	1.1655	1.3573	226.51	4	3	Median	0.31084	0.29145	167.98	5	4	Median	0.3975	0.41618	169.06	7	5	Median	1876800000	813070000	1063700000	571250000	278700000	292550000	204680000	71195000	133490000	357310000	173280000	184030000	743570000	289890000	453680000	22496	127	21302	139709;139710;139711;139712;139713;139714;139715;139716;139717;139718;139719;139720;139721;139722;139723;139724;139725;139726;139727;139728;139729;139730;139731;139732;139733;139734;139735;139736;139737;139738;139739	189409;189410;189411;189412;189413;189414;189415;189416;189417;189418;189419;189420;189421;189422;189423;189424;189425;189426;189427;189428;189429;189430;189431;189432;189433;189434;189435;189436;189437;189438;189439;189440;189441;189442;189443;189444;189445;189446	189422			38	
HLHSIMVLK	1	Oxidation (M)	1092.6114	0.61138492	127	O00410	IPO5	Importin-5	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	16	0									7	2	1	1	3	39.756	30.552	3	0.0010751	17426	160513_QHF_FH_JSI9Kac_6	63.534	52.37			1.7832	1.9755	67.588	5	3	Median	NaN	NaN	NaN	0	0	Median	1.4768	1.7067	NaN	1	0	Median	2.964	2.808	NaN	1	0	Median	1.7832	1.9755	81.656	3	3	Median	48733000	16149000	32584000	0	0	0	13707000	3777800	9929500	9935700	2609700	7326000	25090000	9761900	15328000	22497	127	21302	139740;139741;139742;139743;139744;139745;139746	189447;189448;189449;189450;189451;189452	189449		56	6	
HLIEQDFPGMR	0	Unmodified	1341.65	0.64995528	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	51.253	50.295	2;3	7.2501E-05	43001	160511_QHF_FH_JSI12i_2	101.11	91.152			0.36881	0.36296	166.09	5	5	Median	NaN	NaN	NaN	0	0	Median	0.14635	0.17653	NaN	1	1	Median	1.3867	1.4011	191.02	2	2	Median	1.1719	1.2684	202.61	2	2	Median	148220000	90712000	57503000	0	0	0	25356000	21489000	3867000	64962000	36257000	28705000	57897000	32966000	24932000	22498	4727	21303	139747;139748;139749;139750;139751	189453;189454;189455;189456;189457	189453			5	
HLIFVLNK	1	Unmodified	982.59639	0.59638679	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	4	4	3	3	63.06	57.073	2;3	4.4689E-10	30071	160513_QHF_FH_JSI9Kac_6	160.69	140.14			0.29816	0.29351	296.6	6	6	Median	0.62692	0.52287	314.82	4	4	Median	1.9761	2.3733	NaN	1	1	Median	0.015017	0.014641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1017200000	689010000	328220000	279760000	137030000	142730000	292000000	210640000	81361000	224750000	153460000	71287000	220720000	187880000	32846000	22499	2471	21304	139752;139753;139754;139755;139756;139757;139758;139759;139760;139761;139762;139763;139764;139765	189458;189459;189460;189461;189462;189463;189464;189465;189466;189467;189468;189469;189470;189471	189464			14	
HLIHFLK	1	Unmodified	906.54396	0.54395729	4807	Q9H9C1	VIPAS39	Spermatogenesis-defective protein 39 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				44.625	43.025	3	0.0066168	35172	160511_QHF_FH_JSI9i_3	50.039	21.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22500	4807	21305	139766	189472	189472			1	
HLILLIK	1	Unmodified	848.58476	0.58475947	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	3	3	5	3	64.566	57.766	2;3	0.00063466	30838	160513_QHF_FH_JSI9Kac_6	114.67	0			0.016184	0.015538	71.044	5	4	Plateau	0.022393	0.018922	1.7582	2	1	Median	0.034689	0.040532	NaN	1	1	Median	0.016184	0.015538	NaN	1	1	Median	0.080449	0.084884	NaN	1	1	Median	879210000	423540000	455670000	203230000	142400000	60834000	189900000	118110000	71782000	290520000	127940000	162580000	195570000	35091000	160470000	22501	2947	21306	139767;139768;139769;139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780	189473;189474;189475;189476;189477;189478;189479;189480;189481;189482;189483;189484;189485;189486	189480			14	
HLILPEK	1	Unmodified	848.51199	0.51198846	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	30.425	29.328	2	0.0080385	24759	160511_QHF_FH_JSI11i_2	87.284	16.143			0.028061	0.028711	291.62	4	4	Linear	6.5185	5.2934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.024607	0.024597	NaN	1	1	Median	0.45171	0.50244	331.31	2	2	Median	313710000	225890000	87828000	18499000	4732000	13767000	0	0	0	120490000	118730000	1759800	174720000	102420000	72301000	22502	552	21307	139781;139782;139783;139784	189487;189488;189489;189490	189490			4	
HLIPAANTGESK	1	Unmodified	1236.6463	0.64625011	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.21	2	14	11					6	7	9	10	11	10	20.746	17.443	2;3	4.9757E-06	9889	160513_QHF_FH_JSI9Kac_6	104.82	92.766			4.9089	5.7382	343.74	35	34	Median	4.1031	3.5176	328.29	9	9	Median	7.5537	8.7881	366.73	8	8	Median	10.045	9.479	358.21	9	9	Median	8.1594	8.6801	377.23	9	8	Median	18080000000	8527800000	9552400000	2942200000	1413300000	1528900000	3506300000	1522800000	1983500000	6166300000	3108300000	3057900000	5465400000	2483400000	2982000000	22503	1990	21308	139785;139786;139787;139788;139789;139790;139791;139792;139793;139794;139795;139796;139797;139798;139799;139800;139801;139802;139803;139804;139805;139806;139807;139808;139809;139810;139811;139812;139813;139814;139815;139816;139817;139818;139819;139820;139821;139822;139823;139824	189491;189492;189493;189494;189495;189496;189497;189498;189499;189500;189501;189502;189503;189504;189505;189506;189507;189508;189509;189510;189511;189512;189513;189514;189515;189516;189517;189518;189519;189520;189521;189522;189523;189524;189525;189526;189527;189528;189529;189530;189531;189532;189533;189534;189535;189536;189537;189538;189539;189540;189541;189542	189532			52	
HLIPAANTGESKVFYYK	2	Acetyl (K)	1979.0153	0.015262719	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	72.354	63.467	2;3	1.8259E-54	34371	160513_QHF_FH_JSI11Kac_6	237.3	200.88			0.18138	0.20163	105.34	4	4	Linear	2.797	2.3521	NaN	1	1	Median	0.37108	0.44073	NaN	1	1	Median	0.3143	0.2988	NaN	1	1	Median	1.9192	2.054	NaN	1	1	Median	215820000	144930000	70886000	14787000	6601700	8185300	28375000	17871000	10503000	144620000	107890000	36726000	28039000	12569000	15471000	22504	1990	21309	139825;139826;139827;139828;139829	189543;189544;189545;189546;189547	189544	2010		5	
HLITTQTEHK	1	Unmodified	1206.6357	0.63568542	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	8.3477	8.3966	2;3	3.907E-05	5878	160511_QHF_FH_JSI12i_3	94.087	86.825			0.40735	0.38489	225.63	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0308	2.8168	213.85	2	2	Median	0.12443	0.12277	93.961	2	2	Median	377190000	241320000	135870000	0	0	0	0	0	0	135810000	20629000	115190000	241380000	220690000	20687000	22505	5712	21310	139830;139831;139832;139833	189548;189549;189550;189551	189551			4	
HLIVAIGVK	1	Unmodified	948.61204	0.61203685	2802	Q2TBE0	CWF19L2	CWF19-like protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	57.023	47.502	2	0.03141	25238	160513_QHF_FH_JSI9Kac_6	55.504	0			0.48094	0.45399	26.704	2	2	Median	0.65725	0.54834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35192	0.37587	NaN	1	1	Median	43288000	33856000	9431600	14955000	9619300	5335500	0	0	0	0	0	0	28333000	24237000	4096000	22506	2802	21311	139834;139835	189552;189553	189552			2	
HLIVLINK	1	Unmodified	948.61204	0.61203685	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.67	6.47			16					1	16	10	8	6	9	52.349	46.696	2;3	2.3362E-16	25143	160513_QHF_FH_JSI11Kac_6	176.98	63.728			0.013979	0.013157	412.89	18	18	Median	0.04556	0.037913	404.83	6	6	Median	0.7699	0.86229	491.79	5	5	Median	0.013212	0.012373	403.78	4	4	Median	0.011065	0.011648	473.04	3	3	Median	16364000000	8473000000	7891200000	5131400000	2527100000	2604300000	4827400000	2715700000	2111700000	3162800000	1751800000	1411100000	3242600000	1478400000	1764100000	22507	1069;3467	21312	139836;139837;139838;139839;139840;139841;139842;139843;139844;139845;139846;139847;139848;139849;139850;139851;139852;139853;139854;139855;139856;139857;139858;139859;139860;139861;139862;139863;139864;139865;139866;139867;139868	189554;189555;189556;189557;189558;189559;189560;189561;189562;189563;189564;189565;189566;189567;189568;189569;189570;189571;189572;189573;189574;189575;189576;189577;189578;189579;189580;189581;189582;189583;189584;189585;189586;189587;189588;189589;189590;189591;189592;189593;189594;189595;189596	189562			43	
HLKALTSELANARDESK	2	Acetyl (K)	1924.0014	0.0014035686	1270	P26038	MSN	Moesin	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			58.847	50.391	3	0.02352	27750	160513_QHF_FH_JSI10Kac_6	52.862	30.387			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14125000	0	14125000	0	0	0	14125000	0	14125000	0	0	0	0	0	0	22508	1270	21313	139869	189597	189597	1176		1	
HLKTKPSDEEMLFIYGHYK	3	Acetyl (K)	2377.1777	0.17765337	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	72.611	64.059	4	0.00012865	35063	160513_QHF_FH_JSI10Kac_6	91.371	77.64			0.1424	0.17056	81.203	3	3	Median	0.054046	0.04552	NaN	1	1	Median	0.1424	0.17056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.18832	0.19971	NaN	1	1	Median	294190000	256410000	37782000	127830000	115560000	12271000	63658000	59587000	4070500	0	0	0	102710000	81266000	21440000	22509	863	21314	139870;139871;139872	189598;189599;189600;189601	189601	555;556		4	
HLLAFLLAELGTSGSIDGNNQLVIK	1	Unmodified	2622.4381	0.43810182	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	98.853	91.272	3	5.8843E-09	49289	160513_QHF_FH_JSI12Kac_6	124.86	104.42			0.58304	0.65701	156.26	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6828	1.9836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20201	0.21762	NaN	1	1	Median	389330000	215700000	173620000	0	0	0	246480000	93787000	152690000	0	0	0	142850000	121920000	20931000	22510	1169	21315	139873;139874	189602;189603	189602			2	
HLLDDNGQDK	1	Unmodified	1153.5364	0.53636531	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	11.759	11.151	2	1.6731E-05	9040	160511_QHF_FH_JSI10i_2	146.69	105.66			0.07021	0.068991	221.16	4	4	Median	0.082479	0.074031	NaN	1	1	Median	0.47474	0.57681	318.65	2	2	Median	NaN	NaN	NaN	0	0	Median	0.059765	0.064295	NaN	1	1	Median	190180000	143740000	46434000	48036000	45574000	2461600	98600000	58010000	40589000	0	0	0	43541000	40158000	3383100	22511	1181	21316	139875;139876;139877;139878	189604;189605;189606;189607	189607			4	
HLLDDNGQDKPVKPPTK	3	Unmodified	1901.0007	0.0006752871	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	3	1	24.989	24.554	3;4	7.7242E-06	20714	160511_QHF_FH_JSI10i_3	95.767	79.082			2.0123	1.9	94.343	6	6	Median	NaN	NaN	NaN	0	0	Median	0.89096	1.0236	135.89	2	2	Median	1.852	1.7724	99.808	3	3	Median	2.4563	2.4709	NaN	1	1	Median	496850000	227150000	269710000	0	0	0	109960000	56350000	53606000	334670000	153400000	181270000	52227000	17395000	34832000	22512	1181	21317	139879;139880;139881;139882;139883;139884	189608;189609;189610;189611;189612;189613;189614	189613			7	
HLLEGAK	1	Unmodified	766.43374	0.43373813	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		9.6956	9.4971	2	0.027308	7050	160511_QHF_FH_JSI11i_2	56.122	21.229			15.238	15.363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15.238	15.363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59556000	2583100	56973000	0	0	0	0	0	0	59556000	2583100	56973000	0	0	0	22513	4360	21318	139885	189615	189615			1	
HLLEGQNASVLAYGPTGAGK	1	Unmodified	1982.0221	0.022139011	2577	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			57.106	56.152	3	5.5727E-05	49337	160511_QHF_FH_JSI9i_2	69.256	60.761			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24402000	24402000	0	8542100	8542100	0	15860000	15860000	0	0	0	0	0	0	0	22514	2577	21319	139886;139887	189616;189617	189616			2	
HLLFQSHMATK	1	Unmodified	1311.6758	0.6757761	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	5	2	3	3	36.795	32.705	2;3	1.7058E-06	27575	160511_QHF_FH_JSI11i_3	105.2	84.917			2.2537	2.1802	158.16	10	10	Median	0.9583	0.81401	120.29	4	4	Median	3.4625	4.0777	81.012	2	2	Median	0.71092	0.67483	213.57	2	2	Median	1.7358	1.7411	287.2	2	2	Median	793450000	432540000	360910000	299360000	152260000	147100000	129810000	68548000	61260000	110390000	79728000	30665000	253890000	132000000	121880000	22515	5192	21320	139888;139889;139890;139891;139892;139893;139894;139895;139896;139897;139898;139899;139900	189618;189619;189620;189621;189622;189623;189624;189625;189626;189627;189628;189629;189630;189631;189632	189619			15	
HLLGAEHGDEPR	0	Unmodified	1329.6426	0.64256171	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.948	14.021	3	0.00010663	10867	160511_QHF_FH_JSI12i_3	93.011	87.952			0.57612	0.56816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57612	0.56816	NaN	1	1	Median	27060000	16609000	10452000	0	0	0	0	0	0	0	0	0	27060000	16609000	10452000	22516	4458	21321	139901;139902	189633;189634	189634			2	
HLLGVEDLLQK	1	Unmodified	1263.7187	0.71868677	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		4									2	2		75.277	74.605	2;3	0.00011517	65588	160511_QHF_FH_JSI11i_2	85.533	62.157			2.305	2.3342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.305	2.3342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46318000	32709000	13609000	0	0	0	9507000	9507000	0	36811000	23202000	13609000	0	0	0	22517	2162	21322	139903;139904;139905;139906	189635;189636;189637;189638	189636			4	
HLLIGLPSGAILSLPK	1	Unmodified	1628.0025	0.002513188	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.84		5	2						6	4	4	2	3	95.72	91.929	2;3	3.8414E-28	81735	160511_QHF_FH_JSI9i_3	146.59	134.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22518	3562	21323	139907;139908;139909;139910;139911;139912;139913;139914;139915;139916;139917;139918;139919	189639;189640;189641;189642;189643;189644;189645;189646;189647;189648;189649;189650;189651	189642			13	
HLLIGVSSDR	0	Unmodified	1095.6037	0.60365701	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.31	6.6		5	10						11	5	7	6	8	39.08	34.905	2;3	2.942E-11	19231	160513_QHF_FH_JSI10Kac_6	147.36	131.16			0.0017828	0.0016627	275.85	22	22	Linear	0.45494	0.37099	266	5	5	Median	0.10177	0.11506	263.04	7	7	Median	0.1757	0.17745	301.94	5	5	Median	11.122	12.181	346.61	5	5	Median	3560300000	2604300000	956070000	347430000	216980000	130450000	1010900000	555400000	455530000	1224100000	981280000	242780000	977900000	850590000	127310000	22519	1454	21324	139920;139921;139922;139923;139924;139925;139926;139927;139928;139929;139930;139931;139932;139933;139934;139935;139936;139937;139938;139939;139940;139941;139942;139943;139944;139945	189652;189653;189654;189655;189656;189657;189658;189659;189660;189661;189662;189663;189664;189665;189666;189667;189668;189669;189670;189671;189672;189673;189674;189675;189676;189677;189678;189679;189680	189680			29	
HLLKNLFK	2	Acetyl (K)	1053.6335	0.63350058	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.715	58.11	2	0.00094889	31542	160513_QHF_FH_JSI11Kac_6	104.21	64.546			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21407000	0	21407000	0	0	0	0	0	0	21407000	0	21407000	0	0	0	22520	1495	21325	139946	189681	189681	1511		1	
HLLKPWDAK	2	Acetyl (K)	1148.6342	0.63422886	2848	Q53ET0	CRTC2	CREB-regulated transcription coactivator 2	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	60.292	50.637	2	0.00056397	26465	160513_QHF_FH_JSI12Kac_6	92.062	92.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37513000	23200000	14314000	5613800	0	5613800	0	0	0	14571000	14571000	0	17328000	8628300	8699800	22521	2848	21326	139947;139948;139949;139950	189682;189683;189684;189685	189685	2696		4	
HLLLVDPEGVVR	0	Unmodified	1345.7718	0.77178497	1319	P29353;P98077	SHC1;SHC2	SHC-transforming protein 1;SHC-transforming protein 2	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		68.236	67.533	2;3	0.00046613	59316	160511_QHF_FH_JSI11i_2	57.019	50.497			0.62341	0.67625	159.68	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7433	2.0916	NaN	1	1	Median	0.22294	0.21864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31543000	20173000	11370000	0	0	0	18277000	8938600	9338000	13266000	11234000	2031900	0	0	0	22522	1319	21327	139951;139952	189686;189687	189686			2	
HLLLYQALGWQPPHFAHLPLLLNR	0	Unmodified	2846.586	0.58604388	2896	Q5JPH6	EARS2	Probable glutamate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			93.54	86.723	4	4.3097E-27	48453	160513_QHF_FH_JSI9Kac_6	139.11	127.37			1.5941	1.3366	86.125	3	2	Median	1.5941	1.3366	NaN	1	0	Median	0.73782	0.8829	117	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1248300000	746580000	501700000	191410000	74089000	117320000	1056900000	672490000	384380000	0	0	0	0	0	0	22523	2896	21328	139953;139954;139955	189688;189689;189690;189691	189688			4	
HLLNQAVGEEEVPK	1	Unmodified	1561.81	0.81002097	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	40.067	39.123	2	8.833E-10	33417	160511_QHF_FH_JSI12i_3	105.46	78.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61389000	18808000	42581000	9280100	0	9280100	9851900	0	9851900	29093000	10931000	18162000	13165000	7877500	5287200	22524	4632	21329	139956;139957;139958;139959;139960;139961;139962;139963;139964	189692;189693;189694;189695;189696;189697;189698;189699;189700;189701	189701			10	
HLLNSPTDPFNR	0	Unmodified	1409.7052	0.70516197	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		48.494	47.753	2	0.00065317	41099	160511_QHF_FH_JSI11i_2	81.338	75.303			0.052023	0.063213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.052023	0.063213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30850000	30088000	761980	0	0	0	14775000	14013000	761980	16076000	16076000	0	0	0	0	22525	647	21330	139965;139966	189702;189703	189702			2	
HLLPKIR	1	Acetyl (K)	917.58107	0.58107107	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.301	36.626	2	0.043381	19975	160513_QHF_FH_JSI11Kac_6	68.398	37.095			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14356000	14356000	0	0	0	0	0	0	0	14356000	14356000	0	0	0	0	22526	1764	21331	139967	189704	189704			1	
HLLPVETQR	0	Unmodified	1091.6087	0.60874239	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	1	3	3	27.906	27.56	2	0.00025092	23376	160511_QHF_FH_JSI11i_3	109.86	89.342			2.3124	2.0316	191.87	7	7	Median	2.3124	2.0316	NaN	1	1	Median	0.08262	0.10179	NaN	1	1	Median	11.256	11.062	210.97	3	3	Plateau	1.4948	1.5435	205.42	2	2	Median	486750000	208430000	278320000	45911000	8764600	37146000	86718000	77039000	9679500	228200000	67659000	160540000	125920000	54967000	70951000	22527	2517	21332	139968;139969;139970;139971;139972;139973;139974;139975;139976	189705;189706;189707;189708;189709;189710;189711;189712;189713	189705			9	
HLLPVTTADLSSK	1	Unmodified	1380.7613	0.76127986	4149	Q96K37	SLC35E1	Solute carrier family 35 member E1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.248	52.724	2	0.055889	45520	160511_QHF_FH_JSI11i_2	43.419	4.3967			0.021822	0.021859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.021822	0.021859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25350000	24711000	639270	0	0	0	0	0	0	25350000	24711000	639270	0	0	0	22528	4149	21333	139977	189714	189714			1	
HLLQAPLDDAQEILQAR	0	Unmodified	1930.0272	0.027224389	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	85.124	84.816	2;3	8.8925E-06	73314	160511_QHF_FH_JSI12i_3	106.49	64.491			1.4323	1.4527	112.73	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65941	0.6546	NaN	1	1	Median	3.1112	3.2237	NaN	1	1	Median	61704000	26334000	35370000	0	0	0	0	0	0	29214000	22261000	6952600	32490000	4072700	28417000	22529	2675	21334	139978;139979;139980;139981	189715;189716;189717;189718;189719	189719			5	
HLLQAPVDDAQEILHSR	0	Unmodified	1941.0068	0.0068232975	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	2	3	66.726	66.355	3	2.0718E-13	58894	160511_QHF_FH_JSI11i_3	186.75	180.31			1.4957	1.5456	99.902	7	7	Median	1.8522	1.5912	NaN	1	1	Median	0.57468	0.71066	NaN	1	1	Median	0.8375	0.78659	114	2	2	Median	1.4957	1.5456	144.21	3	3	Median	1106000000	584730000	521270000	55811000	19379000	36431000	81247000	50323000	30924000	622870000	339080000	283800000	346070000	175960000	170120000	22530	2674	21335	139982;139983;139984;139985;139986;139987;139988	189720;189721;189722;189723;189724;189725;189726	189721			7	
HLLQEAR	0	Unmodified	865.477	0.47699993	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.6132	9.7108	2	0.01483	7028	160511_QHF_FH_JSI12i_3	65.252	41.28			8.7808	8.7036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.7808	8.7036	NaN	1	1	Median	26789000	3622800	23167000	0	0	0	0	0	0	0	0	0	26789000	3622800	23167000	22531	235	21336	139989	189727	189727			1	
HLLSAGDGEVK	1	Unmodified	1124.5826	0.58258722	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	21.941	21.115	2	0.00051299	17531	160511_QHF_FH_JSI12i_2	85.731	68.491			2.8723	2.9299	15.733	3	3	Median	3.969	3.4039	NaN	1	1	Median	2.0439	2.4853	NaN	1	1	Median	2.8723	2.9299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146340000	26003000	120340000	28713000	2665000	26048000	36321000	13136000	23184000	62614000	10201000	52412000	18693000	0	18693000	22532	3350	21337	139990;139991;139992;139993	189728;189729;189730;189731	189728			4	
HLLSLMGIPYLDAPSEAEASCAALVK	1	Unmodified	2755.3925	0.39247353	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	101.48	101.45	3	1.0679E-31	88147	160511_QHF_FH_JSI12i_3	148.28	142.02			1.0886	1.1011	17.692	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96587	0.94599	21.731	2	1	Median	1.0886	1.1011	NaN	1	0	Median	1132300000	609800000	522540000	0	0	0	0	0	0	490200000	347680000	142520000	642140000	262120000	380020000	22533	1488	21338	139994;139995;139996	189732;189733	189733			2	
HLLSLMGIPYLDAPSEAEASCAALVK	1	Oxidation (M)	2771.3874	0.38738815	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	100.72	100.74	3	3.8614E-13	87359	160511_QHF_FH_JSI12i_3	94.838	88.405			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51008000	0	51008000	0	0	0	0	0	0	0	0	0	51008000	0	51008000	22534	1488	21338	139997	189734	189734		1168	1	
HLLSPVGR	0	Unmodified	877.51339	0.51338544	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			23.375	22.12	2	0.016542	18201	160511_QHF_FH_JSI10i_3	47.849	16.559			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22535	5104	21339	139998	189735	189735			1	
HLLSQPLFTESQK	1	Unmodified	1526.8093	0.80929269	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							1	1	5	6	51.63	51.39	2;3	6.2179E-06	45093	160511_QHF_FH_JSI11i_3	127.42	106.55			0.16754	0.16668	221.73	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.1296	5.8371	23.243	2	2	Median	0.41454	0.41702	278.05	2	2	Median	459160000	270300000	188860000	0	0	0	10752000	10752000	0	190400000	107100000	83305000	258000000	152450000	105550000	22536	4603	21340	139999;140000;140001;140002;140003;140004;140005;140006;140007;140008;140009;140010;140011	189736;189737;189738;189739;189740;189741;189742;189743;189744;189745;189746;189747;189748;189749;189750;189751	189738			16	
HLLTVLLK	1	Unmodified	935.61679	0.61678788	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	3	3	4	3	64.732	60.011	2	0.0004207	51026	160511_QHF_FH_JSI10i_3	129.4	80.894			0.024706	0.024096	434.67	4	4	Linear	0.016769	0.013971	NaN	1	1	Median	0.0093368	0.010718	NaN	1	1	Median	5.4453	4.9807	NaN	1	1	Median	60.924	66.033	NaN	1	1	Median	593840000	371460000	222380000	160660000	70860000	89801000	146170000	95281000	50891000	161450000	91073000	70374000	125560000	114240000	11316000	22537	2947	21341	140012;140013;140014;140015;140016;140017;140018;140019;140020;140021;140022;140023;140024	189752;189753;189754;189755;189756;189757;189758;189759;189760;189761;189762;189763;189764;189765	189756			14	
HLLVHAPEDK	1	Unmodified	1157.6193	0.61930707	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	21.095	21.096	3	0.014109	17278	160511_QHF_FH_JSI12i_3	35.541	22.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22538	1798	21342	140025	189766	189766			1	
HLLVHAPEDKK	2	Unmodified	1285.7143	0.71427009	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	17.586	17.609	3;4	8.602E-05	14253	160511_QHF_FH_JSI12i_3	73.9	68.842			0.88979	0.82827	46.358	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74984	0.6997	23.855	2	1	Median	0.75367	0.75865	55.524	3	2	Plateau	681030000	309880000	371150000	0	0	0	0	0	0	218200000	125070000	93131000	462830000	184810000	278020000	22539	1798	21343	140026;140027;140028;140029;140030	189767;189768;189769;189770;189771;189772	189770			6	
HLLVPER	0	Unmodified	862.50249	0.5024864	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	21.652	21.643	2	0.024196	17682	160511_QHF_FH_JSI12i_3	58.194	32.575			15.788	16.806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15.788	16.806	NaN	1	1	Median	18861000	841110	18020000	0	0	0	0	0	0	0	0	0	18861000	841110	18020000	22540	1443	21344	140031	189773	189773			1	
HLLVSNVGGDGEEIER	0	Unmodified	1722.8537	0.8536767	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.88		13	8						1	3	4	9	6	45.517	44.496	2;3	7.6871E-19	39012	160511_QHF_FH_JSI11i_3	208.15	182.81			0.19507	0.21434	165.54	17	17	Median	0.25377	0.21596	150.16	3	3	Median	0.17187	0.21434	141.7	3	3	Median	0.16804	0.16771	187.2	6	6	Median	0.23089	0.26072	209.98	5	5	Median	1877600000	1084000000	793590000	204910000	120930000	83980000	386580000	254500000	132080000	783600000	418440000	365160000	502470000	290100000	212370000	22541	558	21345	140032;140033;140034;140035;140036;140037;140038;140039;140040;140041;140042;140043;140044;140045;140046;140047;140048;140049;140050;140051;140052;140053	189774;189775;189776;189777;189778;189779;189780;189781;189782;189783;189784;189785;189786;189787;189788;189789;189790;189791;189792;189793;189794;189795;189796;189797;189798;189799	189774			26	
HLLVYGWGR	0	Unmodified	1099.5927	0.59269839	4860	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	63.325	54.22	2	0.00094139	29552	160513_QHF_FH_JSI11Kac_6	71.715	38.874			5.7194	6.5526	95.728	2	2	Median	NaN	NaN	NaN	0	0	Median	10.742	12.894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0452	3.33	NaN	1	1	Median	27540000	4234300	23306000	0	0	0	22254000	2703600	19551000	0	0	0	5286100	1530700	3755400	22542	4860	21346	140054;140055;140056	189800;189801;189802	189800			3	
HLLYQLLWNMFSK	1	Unmodified	1691.8858	0.88576887	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									6	3	3			97.68	90.267	2;3	4.6554E-47	50874	160513_QHF_FH_JSI9Kac_6	220.25	186.29			0.22326	0.19255	111.53	5	5	Median	0.16412	0.1409	148.88	3	3	Plateau	0.23997	0.27952	64.433	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	472100000	322320000	149780000	200930000	130000000	70922000	271170000	192320000	78854000	0	0	0	0	0	0	22543	1193	21347	140057;140058;140059;140060;140061;140062	189803;189804;189805;189806;189807;189808	189805			6	
HLMLPDFDLLEDIESK	1	Unmodified	1913.9445	0.94446554	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.2	0.4		4	1									3	2	107.89	107.81	3	0.010517	93686	160511_QHF_FH_JSI11i_2	44.294	30.04			3.2152	3.3262	14.967	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7524	2.7126	13.07	2	1	Median	3.2152	3.3262	NaN	1	0	Median	19674000	2562300	17112000	0	0	0	0	0	0	6596600	1745100	4851500	13078000	817170	12260000	22544	1024	21348	140063;140064;140065;140066;140067	189809;189810;189811;189812;189813	189811			5	
HLMQDLR	0	Unmodified	911.46472	0.46472069	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		19.744	19.436	2	0.0034023	15818	160511_QHF_FH_JSI11i_3	100.74	38.027			0.15692	0.15774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15692	0.15774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	122330000	107840000	14486000	0	0	0	0	0	0	122330000	107840000	14486000	0	0	0	22545	3723	21349	140068;140069;140070	189814;189815;189816	189814			3	
HLMSVASQEK	1	Unmodified	1128.5597	0.55974328	5782				yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	27.103	27.065	2	0.0055487	22596	160511_QHF_FH_JSI12i_3	63.419	36.53	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38286000	38286000	0	0	0	0	0	0	0	0	0	0	38286000	38286000	0	22546	5782	21350	140071;140072	189817;189818	189818			2	
HLMWDLGK	1	Unmodified	998.50077	0.50077184	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.771	55.84	2	0.0025803	48000	160511_QHF_FH_JSI11i_2	86.953	59.991			2.0772	2.2016	103.51	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5273	4.5771	NaN	1	1	Median	0.95301	1.0589	NaN	1	1	Median	340830000	62923000	277910000	0	0	0	0	0	0	251640000	38047000	213590000	89193000	24876000	64317000	22547	4298	21351	140073;140074	189819;189820;189821	189821			3	
HLNDDVVK	1	Unmodified	938.48214	0.48214489	2202	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.17	4.84		5						1		1		3	2	14.914	12.875	2	0.0017379	10834	160511_QHF_FH_JSI9i_2	98.582	71.889			8.3852	7.3971	301.03	5	5	Median	8.3852	7.3971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54472	0.55456	430.65	2	2	Median	0.85942	0.9554	362	2	2	Median	685900000	291890000	394010000	101370000	31695000	69675000	0	0	0	393950000	156820000	237130000	190580000	103380000	87204000	22548	2202	21352	140075;140076;140077;140078;140079;140080	189822;189823;189824;189825;189826;189827	189824			6	
HLNDETTSK	1	Unmodified	1043.4884	0.48835248	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.45	7	8	3				2	1		5	5	6	5	5.3492	3.8121	2	3.9608E-16	2983	160511_QHF_FH_JSI10i_2	191.1	142.6			14.947	16.546	291.85	7	7	Median	3.016	2.564	317.54	2	2	Median	31.46	38.757	NaN	1	1	Median	2.3389	2.3708	358.56	3	3	Plateau	14.947	16.546	NaN	1	1	Median	3370300000	1554200000	1816100000	691340000	237860000	453480000	802630000	407890000	394740000	947570000	377540000	570030000	928760000	530910000	397850000	22549	5015	21353	140081;140082;140083;140084;140085;140086;140087;140088;140089;140090;140091;140092;140093;140094;140095;140096;140097;140098;140099;140100;140101	189828;189829;189830;189831;189832;189833;189834;189835;189836;189837;189838;189839;189840;189841;189842;189843;189844;189845;189846;189847;189848	189848			21	
HLNEIDLFHCIDPNDSK	1	Unmodified	2065.9527	0.95273882	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.369	75.125	3	0.0001105	64915	160511_QHF_FH_JSI12i_2	69.188	59.048			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22550	2642	21354	140102	189849	189849			1	
HLNFLTSEQALADFAELIK	1	Unmodified	2159.1263	0.12626973	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	103	102.83	3	0.0011817	88793	160511_QHF_FH_JSI12i_2	43.115	35.276			0.58823	0.64184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58823	0.64184	NaN	1	0	Median	39031000	30060000	8971200	0	0	0	0	0	0	0	0	0	39031000	30060000	8971200	22551	1548	21355	140103	189850	189850			1	
HLNLGMNR	0	Unmodified	953.48652	0.48651876	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.199	22.878	2	0.0019527	18494	160511_QHF_FH_JSI9i_3	81.381	43.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22552	2668	21356	140104	189851	189851			1	
HLNMKLTR	1	Acetyl (K)	1053.5753	0.57533377	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	39.279	30.16	2	0.0075624	16846	160513_QHF_FH_JSI10Kac_6	81.642	33.139			0.019439	0.021947	29.552	2	2	Median	NaN	NaN	NaN	0	0	Median	0.022909	0.027048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.016495	0.017809	NaN	1	1	Median	98258000	97556000	701530	6616800	6616800	0	34805000	34213000	592190	41004000	41004000	0	15831000	15722000	109340	22553	1480	21357	140105;140106;140107;140108	189852;189853;189854;189855	189855	1475		4	
HLNPDTELK	1	Unmodified	1065.5455	0.54547343	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	19.312	18.564	2	2.763E-06	15236	160511_QHF_FH_JSI11i_2	138.98	101.42			0.76306	0.74758	104.05	5	5	Median	0.16128	0.13849	NaN	1	1	Median	0.84731	1.0197	NaN	1	1	Median	0.76306	0.74758	NaN	1	1	Median	0.29328	0.33124	136.77	2	2	Median	506140000	381300000	124840000	121310000	99344000	21964000	92623000	63880000	28744000	194900000	147530000	47367000	97311000	70544000	26768000	22554	4352	21358	140109;140110;140111;140112;140113;140114;140115;140116	189856;189857;189858;189859;189860;189861;189862;189863	189861			8	
HLNPGLQLYR	0	Unmodified	1209.6618	0.66184059	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	42.298	42.075	2	0.012054	35916	160511_QHF_FH_JSI12i_3	55.531	24.457			0.34347	0.37162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34347	0.37162	NaN	1	1	Median	70787000	60651000	10136000	0	0	0	0	0	0	0	0	0	70787000	60651000	10136000	22555	2620	21359	140117	189864	189864			1	
HLNTQQLTAFQLLFAWR	0	Unmodified	2086.1112	0.11122879	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.282	89.562	2	1.8992E-54	51651	160513_QHF_FH_JSI10Kac_6	269.08	238.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33342000	33342000	0	0	0	0	33342000	33342000	0	0	0	0	0	0	0	22556	2175	21360	140118	189865	189865			1	
HLNYGSR	0	Unmodified	845.4144	0.41439968	5264	Q9UBZ4	APEX2	DNA-(apurinic or apyrimidinic site) lyase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	5.0093	-1.8685	2	0.014829	1407	160513_QHF_FH_JSI12Kac_6	75.311	0			0.64067	0.70907	6.2946	2	0	Median	NaN	NaN	NaN	0	0	Median	0.58018	0.67821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70747	0.74135	NaN	1	0	Median	155020000	95748000	59268000	0	0	0	117680000	75708000	41969000	0	0	0	37338000	20039000	17299000	22557	5264	21361	140119;140120	189866;189867	189867			2	
HLPDNECIEK	1	Unmodified	1253.571	0.57103625	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		22.119	21.783	2	0.0068973	18011	160511_QHF_FH_JSI11i_2	53.756	45.224			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22558	1818	21362	140121	189868	189868			1	
HLPDRQDGPAAK	1	Unmodified	1303.6633	0.66329715	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			11.522	10.83	3	0.017448	8453	160511_QHF_FH_JSI10i_3	37.426	14.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22559	3906	21363	140122	189869	189869			1	
HLPLQFSR	0	Unmodified	996.5505	0.55049923	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			45.294	43.739	2	0.051543	36487	160511_QHF_FH_JSI10i_3	45.718	8.6972			1.653	1.9564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.653	1.9564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54516000	17239000	37278000	0	0	0	54516000	17239000	37278000	0	0	0	0	0	0	22560	940	21364	140123	189870	189870			1	
HLPMIAALLHGR	0	Unmodified	1327.7547	0.75469512	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.087	70.895	3	3.1893E-16	38635	160513_QHF_FH_JSI10Kac_6	135.86	127.55			1.6573	1.9366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6573	1.9366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87506000	50985000	36521000	0	0	0	87506000	50985000	36521000	0	0	0	0	0	0	22561	3508	21365	140124	189871	189871			1	
HLPMPFHWK	1	Unmodified	1191.6012	0.60115459	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.325	75.927	3	0.050889	63727	160511_QHF_FH_JSI10i_3	24.776	21.131			0.65137	0.68981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65137	0.68981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1993400	1539100	454300	0	0	0	1993400	1539100	454300	0	0	0	0	0	0	22562	1529	21366	140125	189872	189872			1	
HLPNDPMFK	1	Unmodified	1097.5328	0.53280025	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.8		7	4						1	3	2	4	3	38.981	38.087	2	5.1637E-06	33776	160511_QHF_FH_JSI9i_2	133.23	74.253			1.4878	1.7012	114.89	11	11	Median	2.1994	1.8644	104.7	3	3	Median	1.5987	1.9069	16.141	2	2	Median	0.28953	0.27478	174.06	3	3	Median	1.0033	1.122	122.17	3	3	Plateau	2949100000	1518300000	1430900000	677070000	301370000	375700000	431400000	205230000	226170000	1005900000	576170000	429740000	834770000	435490000	399280000	22563	517	21367	140126;140127;140128;140129;140130;140131;140132;140133;140134;140135;140136;140137	189873;189874;189875;189876;189877;189878;189879;189880;189881;189882;189883;189884;189885;189886;189887;189888;189889;189890;189891;189892	189883			20	
HLPPAALHLIAYYK	1	Unmodified	1605.9031	0.90313349	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	3	5	77.517	71.797	2;3	2.8505E-13	66225	160511_QHF_FH_JSI10i_3	119.39	96.911			0.55169	0.48573	258.62	10	9	Median	6.233	5.1514	304.84	2	1	Median	0.051571	0.061805	NaN	1	1	Median	0.41373	0.39537	308.34	3	3	Median	10.797	11.349	248.46	4	4	Linear	803820000	359210000	444620000	220820000	39241000	181580000	154050000	147100000	6946700	173580000	58435000	115140000	255370000	114430000	140940000	22564	5330	21368	140138;140139;140140;140141;140142;140143;140144;140145;140146;140147;140148;140149;140150;140151;140152;140153	189893;189894;189895;189896;189897;189898;189899;189900;189901;189902;189903;189904;189905;189906;189907;189908;189909	189895			17	
HLPSSDSMSLK	1	Unmodified	1200.5809	0.58087266	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	32.984	32.092	2	0.0010576	27250	160511_QHF_FH_JSI12i_2	77.677	65.051			0.73114	0.79187	101.1	3	3	Median	NaN	NaN	NaN	0	0	Median	0.88745	1.0942	NaN	1	1	Median	0.1641	0.16526	NaN	1	1	Median	0.73114	0.79187	NaN	1	1	Median	111960000	73356000	38608000	0	0	0	61661000	31309000	30352000	24703000	21770000	2932800	25600000	20277000	5322900	22565	602	21369	140154;140155;140156	189910;189911;189912	189910			3	
HLPSTEPDPHVVR	0	Unmodified	1482.7579	0.75792582	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	1	2	2	29.938	28.12	3	0.00014001	24325	160511_QHF_FH_JSI11i_3	74.46	69.477			1.9769	1.8112	90.572	5	5	Median	2.0526	1.8112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98517	0.91853	130.34	2	2	Median	0.90432	0.91705	110.13	2	2	Median	381800000	182800000	199000000	1707700	534580	1173100	0	0	0	151440000	79321000	72119000	228650000	102940000	125710000	22566	4442	21370	140157;140158;140159;140160;140161;140162	189913;189914;189915;189916;189917;189918;189919	189915			7	
HLPTLDHPIIPADYVAIK	1	Unmodified	2012.1095	0.10949746	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							4	1	2	7	84.89	84.125	3;4	1.0507E-11	73711	160511_QHF_FH_JSI11i_2	142.39	125.72			0.87568	0.90631	71.828	12	11	Median	1.0386	0.86141	20.198	2	2	Median	0.87697	1.0778	NaN	1	0	Median	1.7772	1.8013	83.123	2	2	Median	0.69302	0.74452	80.879	7	7	Median	1520400000	670860000	849550000	178600000	78347000	100250000	66274000	40001000	26273000	632950000	265210000	367750000	642580000	287300000	355280000	22567	1372	21371	140163;140164;140165;140166;140167;140168;140169;140170;140171;140172;140173;140174;140175;140176	189920;189921;189922;189923;189924;189925;189926;189927;189928;189929;189930;189931;189932;189933;189934;189935;189936;189937;189938;189939;189940;189941;189942;189943	189937			24	
HLQDASGTDGK	1	Unmodified	1127.5207	0.52071524	4909	Q9NPR9	GPR108	Protein GPR108	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			5.9039	5.4819	2	0.0013034	3436	160511_QHF_FH_JSI9i_2	69.276	21.533			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22568	4909	21372	140177;140178	189944;189945	189944			2	
HLQDLMEGLTAK	1	Unmodified	1354.6915	0.69148574	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.35	0.478		11	6							2	4	6	5	64.603	63.998	2;3	1.3425E-05	55366	160511_QHF_FH_JSI11i_2	127.17	31.159			1.3739	1.3455	221.45	16	15	Median	0.32369	0.27721	253.33	2	2	Median	0.29274	0.36328	279.9	4	4	Median	3.0664	3.2014	213.66	5	5	Median	0.95482	1.0889	228.64	5	4	Median	768010000	480790000	287230000	50882000	34626000	16256000	169850000	93595000	76258000	271420000	150830000	120590000	275860000	201730000	74124000	22569	998	21373	140179;140180;140181;140182;140183;140184;140185;140186;140187;140188;140189;140190;140191;140192;140193;140194;140195	189946;189947;189948;189949;189950;189951;189952;189953;189954;189955;189956;189957;189958;189959;189960;189961;189962	189954			16	
HLQDLSGR	0	Unmodified	924.47773	0.47772821	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		12.836	12.347	2	0.0020032	10022	160511_QHF_FH_JSI9i_2	93.429	47.058			0.16885	0.17493	12.168	2	2	Median	0.21576	0.19064	NaN	1	1	Median	0.13214	0.1605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	205900000	187990000	17917000	48488000	35341000	13147000	57846000	53076000	4770700	99570000	99570000	0	0	0	0	22570	1357	21374	140196;140197;140198	189963;189964;189965	189963			3	
HLQDSLADLK	1	Unmodified	1138.5982	0.59823728	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			39.414	38.448	2	0.0069997	33839	160511_QHF_FH_JSI10i_2	53.597	35.194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22571	3169	21375	140199	189966	189966			1	
HLQEAEQTK	1	Unmodified	1082.5356	0.53563702	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.79		4	1					2		2	1	2	2	6.6972	3.6904	2	1.4096E-05	4314	160511_QHF_FH_JSI10i_2	123.75	53.481			1.5696	1.7207	186.03	7	7	Median	0.54401	0.46638	227.6	2	2	Median	0.055523	0.067827	NaN	1	1	Median	4.2551	4.2624	107.41	2	2	Median	0.55573	0.61743	144.94	2	2	Median	674370000	342330000	332040000	187990000	71476000	116510000	137270000	132390000	4873500	196250000	27869000	168380000	152860000	110590000	42278000	22572	4193	21376	140200;140201;140202;140203;140204;140205;140206	189967;189968;189969;189970;189971;189972;189973	189973			7	
HLQELVGQETLPR	0	Unmodified	1518.8154	0.8154407	3804	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	50.419	49.682	2	5.4039E-08	43502	160511_QHF_FH_JSI11i_2	101.39	73.185			2.9437	2.7709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9437	2.7709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24381000	4020300	20361000	0	0	0	7731600	0	7731600	16650000	4020300	12630000	0	0	0	22573	3804	21377	140207;140208;140209;140210;140211;140212	189974;189975;189976;189977;189978;189979	189977			6	
HLQLAIR	0	Unmodified	849.51847	0.51847082	945;819;2765;1091	P0C0S5;Q71UI9;Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;P16104;Q16777;Q6FI13	H2AFZ;H2AFV;HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;H2AFX;HIST2H2AC;HIST2H2AA3	Histone H2A.Z;Histone H2A.V;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	32.198	31.43	2	0.0049847	26889	160511_QHF_FH_JSI11i_3	105.27	29.353			0.056005	0.065531	140.02	5	5	Median	0.085179	0.06834	NaN	1	1	Median	0.17151	0.20452	160.96	2	2	Median	0.013843	0.012715	NaN	1	1	Median	0.055371	0.056001	NaN	1	1	Median	1313100000	1211200000	101960000	232520000	206170000	26349000	373360000	313470000	59889000	343050000	338040000	5003800	364210000	353500000	10714000	22574	945;819;1091;2765	21378	140213;140214;140215;140216;140217	189980;189981;189982;189983;189984;189985;189986	189980			7	
HLQLAIRNDEELNK	1	Unmodified	1691.8955	0.89548193	819;2765;1091	Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;P16104;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;H2AFX;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	4	1		43.17	41.91	3	1.9743E-06	35069	160511_QHF_FH_JSI10i_3	150.26	136.23			10.535	10.677	168.68	4	4	Linear	2.1596	1.7705	122.65	3	3	Plateau	15.425	17.856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	274550000	64858000	209690000	147650000	59678000	87971000	75536000	5180200	70356000	51361000	0	51361000	0	0	0	22575	819;1091;2765	21379	140218;140219;140220;140221;140222;140223;140224;140225	189987;189988;189989;189990;189991;189992;189993;189994;189995;189996;189997	189989			11	
HLQSLHK	1	Unmodified	861.48209	0.48208531	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				8.1637	7.572	3	0.062005	5391	160511_QHF_FH_JSI9i_3	21.528	2.7455			0.88093	0.73338	NaN	1	1	Median	0.88093	0.73338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74088000	44208000	29880000	74088000	44208000	29880000	0	0	0	0	0	0	0	0	0	22576	5458	21380	140226	189998	189998			1	
HLQTGENHTSVDPR	0	Unmodified	1589.7546	0.75463136	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	13.663	13.072	3	0.011558	9295	160511_QHF_FH_JSI12i_3	29.491	15.745			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5754700	5754700	0	0	0	0	5754700	5754700	0	0	0	0	0	0	0	22577	623	21381	140227;140228	189999;190000	190000			2	
HLQVIFGHLAASR	0	Unmodified	1447.8048	0.80481643	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	66.285	57.273	2;3	4.5069E-07	31445	160513_QHF_FH_JSI10Kac_6	125.84	101.61			13.026	12.623	333.02	7	7	Median	1.6183	1.3919	407.09	2	2	Median	1.0338	1.243	455.49	2	2	Median	13.026	12.623	NaN	1	1	Median	2.4234	2.5474	500.56	2	2	Median	557500000	255460000	302030000	125510000	56507000	69008000	306550000	162770000	143780000	41122000	895430	40227000	84308000	35289000	49019000	22578	3921	21382	140229;140230;140231;140232;140233;140234;140235;140236;140237	190001;190002;190003;190004;190005;190006;190007;190008;190009	190008			9	
HLSASQK	1	Unmodified	769.40825	0.40825167	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.67		8	4						1	5	4	2	2	1.2162	0.31518	2	0.0050577	816	160511_QHF_FH_JSI10i_2	108.24	53.713			23.312	18.925	416.59	13	13	Median	23.312	18.925	453.56	5	5	Median	0.7892	0.90099	453.62	4	4	Median	0.58595	0.58845	530.21	2	2	Median	0.72762	0.81822	556.07	2	2	Median	1570000000	847960000	722070000	455240000	190490000	264750000	485820000	241000000	244820000	405250000	263830000	141420000	223720000	152640000	71078000	22579	1026	21383	140238;140239;140240;140241;140242;140243;140244;140245;140246;140247;140248;140249;140250	190010;190011;190012;190013;190014;190015;190016;190017;190018;190019;190020;190021;190022;190023;190024;190025;190026;190027;190028;190029;190030;190031;190032;190033;190034;190035;190036;190037	190034			28	
HLSDSINQK	1	Unmodified	1040.5251	0.52507234	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	10.98	10.551	2	3.3819E-30	7984	160511_QHF_FH_JSI11i_2	223.83	189.03			1.1115	1.2659	463.59	2	2	Median	NaN	NaN	NaN	0	0	Median	0.039722	0.047725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31.1	33.578	NaN	1	1	Median	282230000	235450000	46771000	34028000	34028000	0	63297000	60174000	3122800	68629000	68629000	0	116270000	72623000	43648000	22580	5640	21384	140251;140252;140253;140254;140255;140256	190038;190039;190040;190041;190042;190043	190041			6	
HLSELLK	1	Unmodified	838.49125	0.49125301	394	O43929;Q96NJ5	ORC4;KLHL32	Origin recognition complex subunit 4;Kelch-like protein 32	yes	no	0	0	0	0			By MS/MS		3	0			1									1		30.939	30.939	2	0.032543	26865	160511_QHF_FH_JSI11i_3	52.636	5.6424			0.96816	0.90502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96816	0.90502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50349000	28460000	21889000	0	0	0	0	0	0	50349000	28460000	21889000	0	0	0	22581	394	21385	140257	190044	190044			1	
HLSESSGK	1	Unmodified	843.40865	0.4086456	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		0.37618	0.19314	2	0.017274	175	160511_QHF_FH_JSI11i_2	46.994	29.227			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22582	3411	21386	140258	190045	190045			1	
HLSESSGKPLSTK	2	Unmodified	1369.7201	0.72014333	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	10.665	10.713	2;3	0.00066023	8375	160511_QHF_FH_JSI11i_3	70.272	31.638			0.23838	0.22364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23838	0.22364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112560000	109090000	3464900	0	0	0	0	0	0	96128000	92663000	3464900	16430000	16430000	0	22583	3411	21387	140259;140260;140261	190046;190047;190048;190049	190046			4	
HLSGEFGK	1	Unmodified	873.43447	0.43446642	1025	P13051	UNG	Uracil-DNA glycosylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.288	14.374	2	0.011658	11519	160511_QHF_FH_JSI12i_2	53.554	34.824			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22584	1025	21388	140262	190050	190050			1	
HLSGNQFILELFHGPTGSFK	1	Unmodified	2228.1378	0.13783747	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	87.648	79.453	3	5.5938E-19	45091	160513_QHF_FH_JSI10Kac_6	141.1	118.73			1.0123	1.215	59.646	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0123	1.215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2229	1.2933	84.198	2	2	Median	185300000	97609000	87689000	0	0	0	93661000	45883000	47778000	0	0	0	91637000	51726000	39911000	22585	3470	21389	140263;140264;140265;140266	190051;190052;190053;190054	190054			4	
HLSLGSVQLCGVGK	1	Unmodified	1453.7711	0.77113304	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	58.215	58.041	2;3	0.00013457	49881	160511_QHF_FH_JSI12i_3	90.731	77.303			2.0047	2.0287	67.842	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4848	1.3407	NaN	1	1	Median	3.1365	3.2006	64.477	2	2	Median	91498000	29997000	61501000	0	0	0	0	0	0	39846000	16222000	23624000	51652000	13775000	37877000	22586	1435	21390	140267;140268;140269;140270	190055;190056;190057;190058	190057			4	
HLSLQPFQK	1	Unmodified	1096.6029	0.60292873	3881	Q92766	RREB1	Ras-responsive element-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	44.602	43.927	2	0.016194	37498	160511_QHF_FH_JSI12i_3	53.753	41.706			12.16	13.437	48.027	2	2	Median	NaN	NaN	NaN	0	0	Median	15.705	18.871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9.4155	9.5681	NaN	1	1	Median	60460000	22402000	38058000	0	0	0	7789200	395540	7393600	0	0	0	52671000	22007000	30664000	22587	3881	21391	140271;140272;140273	190059;190060;190061	190061			3	
HLSMFILLPK	1	Oxidation (M)	1213.6893	0.68930089	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.01			14					1	30	11	11	11	12	74.228	68.155	2;3	9.9251E-14	35401	160513_QHF_FH_JSI12Kac_6	152.47	106.31			0.82234	0.80265	250.65	38	38	Median	2.0319	1.6949	209.61	10	10	Median	0.69931	0.80697	217.72	9	9	Median	3.0427	2.8707	258.34	8	8	Median	0.14718	0.15684	314.56	11	11	Median	9334300000	4858900000	4475400000	2594100000	1074800000	1519300000	2363400000	1422600000	940790000	2030700000	1022400000	1008300000	2346100000	1339100000	1007000000	22588	1464	21392	140274;140275;140276;140277;140278;140279;140280;140281;140282;140283;140284;140285;140286;140287;140288;140289;140290;140291;140292;140293;140294;140295;140296;140297;140298;140299;140300;140301;140302;140303;140304;140305;140306;140307;140308;140309;140310;140311;140312;140313;140314;140315;140316;140317;140318	190062;190063;190064;190065;190066;190067;190068;190069;190070;190071;190072;190073;190074;190075;190076;190077;190078;190079;190080;190081;190082;190083;190084;190085;190086;190087;190088;190089;190090;190091;190092;190093;190094;190095;190096;190097;190098;190099;190100;190101;190102;190103;190104;190105;190106	190097		1132	45	
HLSMFILLPK	1	Unmodified	1197.6944	0.69438627	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.44		3	21						16	10	11	10	9	85.774	81.648	2;3	3.9452E-14	40959	160513_QHF_FH_JSI9Kac_6	157.91	130.8			0.10713	0.10311	379.33	26	23	Median	0.16227	0.13019	342.62	7	6	Median	0.1316	0.15288	383.31	7	6	Median	0.058519	0.054974	439.7	6	6	Median	0.031816	0.0326	454.78	6	5	Median	27227000000	12724000000	14503000000	6790500000	2962700000	3827800000	8305600000	4988300000	3317300000	8004000000	3123100000	4880900000	4126900000	1650000000	2476900000	22589	1464	21392	140319;140320;140321;140322;140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333;140334;140335;140336;140337;140338;140339;140340;140341;140342;140343;140344;140345;140346;140347;140348;140349;140350;140351;140352;140353;140354;140355;140356;140357;140358	190107;190108;190109;190110;190111;190112;190113;190114;190115;190116;190117;190118;190119;190120;190121;190122;190123;190124;190125;190126;190127;190128;190129;190130;190131;190132;190133;190134;190135;190136;190137;190138;190139;190140;190141;190142;190143;190144;190145;190146;190147;190148;190149;190150;190151;190152;190153;190154;190155;190156;190157;190158;190159;190160;190161;190162;190163;190164;190165;190166;190167;190168;190169;190170;190171;190172;190173;190174;190175;190176;190177;190178;190179;190180;190181;190182;190183;190184;190185	190165			79	
HLSPDGQYVPR	0	Unmodified	1267.6309	0.63093439	747	O95994	AGR2	Anterior gradient protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	3	2	2	2	28.1	27.219	2;3	4.8549E-05	22463	160511_QHF_FH_JSI11i_2	103.26	87.995			0.18385	0.20788	240.52	6	6	Median	0.11514	0.097377	NaN	1	1	Median	0.19706	0.23499	NaN	1	1	Median	0.69422	0.69615	272.76	2	2	Median	2.2771	2.4357	365.37	2	2	Median	318030000	201640000	116390000	29387000	26862000	2525400	49578000	43806000	5771400	155860000	92098000	63765000	83198000	38874000	44324000	22590	747	21393	140359;140360;140361;140362;140363;140364;140365;140366;140367	190186;190187;190188;190189;190190;190191;190192;190193;190194;190195	190191			10	
HLSPYATLTVGDSSHK	1	Unmodified	1711.8529	0.85294842	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.482	38.302	3	1.3868E-07	32808	160511_QHF_FH_JSI12i_3	125.33	109.94			14.057	14.382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.057	14.382	NaN	1	1	Median	263140000	26367000	236770000	0	0	0	0	0	0	0	0	0	263140000	26367000	236770000	22591	4399	21394	140368	190196	190196			1	
HLSPYATLTVGDSSHKTK	2	Acetyl (K)	1983.0062	0.0061545955	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	51.824	42.072	3	9.4947E-07	22847	160513_QHF_FH_JSI11Kac_6	149.99	128.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14368000	14368000	0	0	0	0	0	0	0	11557000	11557000	0	2810200	2810200	0	22592	4399	21395	140369;140370;140371	190197;190198;190199	190197	3150		3	
HLSQSSLLLEHLLSSWEQIPK	1	Unmodified	2444.3064	0.30635936	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0		By MS/MS			3	0			3								3			103.41	103.28	3;4	0.00012888	85816	160511_QHF_FH_JSI10i_3	56.081	41.152			0.60083	0.72656	26.313	3	3	Median	NaN	NaN	NaN	0	0	Median	0.60083	0.72656	26.313	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18969000	12753000	6215300	0	0	0	18969000	12753000	6215300	0	0	0	0	0	0	22593	3074	21396	140372;140373;140374	190200;190201;190202;190203	190201			4	
HLSSEPLSR	0	Unmodified	1024.5302	0.53015772	797	P03905	MT-ND4	NADH-ubiquinone oxidoreductase chain 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		4	2							2		2	2	15.229	14.561	2	0.0013548	11452	160511_QHF_FH_JSI11i_2	77.923	32.205			4.1278	4.0545	9.633	3	3	Median	4.9368	4.2933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.1278	4.0545	NaN	1	1	Median	3.3523	3.5578	NaN	1	1	Median	102850000	33957000	68890000	38002000	20858000	17144000	0	0	0	41520000	8078000	33442000	23325000	5021100	18304000	22594	797	21397	140375;140376;140377;140378;140379;140380	190204;190205;190206;190207;190208;190209	190208			6	
HLSVNDLPVGR	0	Unmodified	1205.6517	0.65166983	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.95		15	11						9	9	7	10	9	48.007	45.165	2;3	1.8646E-10	24359	160513_QHF_FH_JSI11Kac_6	125.97	101.19			1.1647	1.2714	242.45	32	32	Median	1.38	1.191	195.36	8	8	Median	0.10962	0.1315	211.2	5	5	Median	0.21174	0.21165	268.65	10	10	Median	11.33	12.369	279.11	9	9	Median	15286000000	8040800000	7245100000	2301200000	972440000	1328800000	2679800000	1662200000	1017600000	5786100000	3187600000	2598500000	4518800000	2218600000	2300300000	22595	1338	21398	140381;140382;140383;140384;140385;140386;140387;140388;140389;140390;140391;140392;140393;140394;140395;140396;140397;140398;140399;140400;140401;140402;140403;140404;140405;140406;140407;140408;140409;140410;140411;140412;140413;140414;140415	190210;190211;190212;190213;190214;190215;190216;190217;190218;190219;190220;190221;190222;190223;190224;190225;190226;190227;190228;190229;190230;190231;190232;190233;190234;190235;190236;190237;190238;190239;190240;190241;190242;190243;190244;190245;190246;190247;190248;190249;190250;190251;190252	190220			43	
HLSVVTLAAK	1	Unmodified	1037.6233	0.62332982	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	4	4	3	2	44.964	40.224	2	3.1154E-06	33911	160511_QHF_FH_JSI12i_3	164.46	121.21			0.1279	0.12239	284.93	7	6	Median	0.11066	0.097402	342.61	3	3	Median	0.79991	0.92904	343.28	2	1	Median	0.1279	0.12239	NaN	1	1	Median	13.474	13.729	NaN	1	1	Median	2148200000	1316800000	831320000	466750000	203110000	263650000	317520000	159710000	157810000	384480000	362530000	21955000	979400000	591500000	387900000	22596	5261	21399	140416;140417;140418;140419;140420;140421;140422;140423;140424;140425;140426;140427;140428	190253;190254;190255;190256;190257;190258;190259;190260;190261;190262;190263;190264;190265;190266	190263			14	
HLSWSAYMYYLK	1	Unmodified	1560.7435	0.74352131	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	3	4	4	82.364	73.958	2;3	3.5617E-20	41530	160513_QHF_FH_JSI10Kac_6	187.97	138.26			0.88263	0.74431	176.14	13	13	Median	6.3933	5.4199	169.15	3	3	Plateau	0.11203	0.13262	208.37	3	3	Plateau	0.76201	0.73619	124.56	3	3	Median	1.8006	1.9174	242.17	4	4	Median	1610500000	756420000	854110000	424730000	218880000	205850000	519590000	256760000	262830000	374850000	158160000	216690000	291350000	122610000	168730000	22597	557	21400	140429;140430;140431;140432;140433;140434;140435;140436;140437;140438;140439;140440;140441;140442	190267;190268;190269;190270;190271;190272;190273;190274;190275;190276;190277;190278;190279;190280	190279			14	
HLSWSAYMYYLK	1	Oxidation (M)	1576.7384	0.73843593	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									3		1		2	76.572	68.154	2;3	1.527E-06	37687	160513_QHF_FH_JSI10Kac_6	119.68	83.299			1.2855	1.3759	8.6902	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0609	1.2467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3249	1.4282	5.274	2	0	Median	45869000	24550000	21318000	0	0	0	16611000	12194000	4416800	0	0	0	29258000	12356000	16902000	22598	557	21400	140443;140444;140445	190281;190282;190283	190283		207	2	
HLTALIK	1	Unmodified	794.50142	0.50142377	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	28.481	28.458	2	0.00605	23819	160511_QHF_FH_JSI12i_3	94.262	51.262			6.6778	6.6945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.6778	6.6945	NaN	1	1	Median	146440000	2622200	143820000	0	0	0	0	0	0	55675000	0	55675000	90770000	2622200	88147000	22599	292	21401	140446;140447	190284;190285;190286	190286			3	
HLTASEAK	1	Unmodified	855.44503	0.4450311	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.46		7	6					4	5	6	5	6	5	5.8676	1.9677	2	0.00041221	1958	160513_QHF_FH_JSI11Kac_6	127.56	83.757			0.12166	0.11942	345.95	19	19	Median	0.13948	0.11281	400.06	5	5	Median	0.068247	0.079126	339.9	5	5	Median	10.106	9.5163	344.87	5	5	Median	0.0552	0.060505	376.74	4	4	Median	6184900000	2987900000	3197000000	1605500000	823830000	781710000	1833300000	1169300000	664010000	1079200000	58665000	1020500000	1666900000	936090000	730770000	22600	1488	21402	140448;140449;140450;140451;140452;140453;140454;140455;140456;140457;140458;140459;140460;140461;140462;140463;140464;140465;140466;140467;140468;140469	190287;190288;190289;190290;190291;190292;190293;190294;190295;190296;190297;190298;190299;190300;190301;190302;190303;190304;190305;190306;190307;190308	190293			22	
HLTDAYFK	1	Unmodified	993.49198	0.4919813	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.35		10	8					1	8	8	6	7	6	33.526	29.738	2;3	6.2302E-06	24817	160511_QHF_FH_JSI12i_3	124.08	98.342			0.058789	0.068318	278.42	20	14	Median	0.34089	0.28485	280.38	6	4	Median	0.049637	0.058843	224.94	6	4	Median	0.37818	0.38357	296.92	4	3	Median	0.44134	0.47949	409.95	4	3	Median	10879000000	5425100000	5454200000	2001300000	964150000	1037200000	2523200000	1512800000	1010500000	4345800000	2015100000	2330700000	2008900000	933090000	1075800000	22601	2196	21403	140470;140471;140472;140473;140474;140475;140476;140477;140478;140479;140480;140481;140482;140483;140484;140485;140486;140487;140488;140489;140490;140491;140492;140493;140494;140495;140496	190309;190310;190311;190312;190313;190314;190315;190316;190317;190318;190319;190320;190321;190322;190323;190324;190325;190326;190327;190328;190329;190330;190331;190332;190333;190334;190335;190336;190337;190338;190339;190340;190341;190342;190343	190339			35	
HLTDAYFKK	2	Acetyl (K)	1163.5975	0.597509	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		45.007	35.696	2	1.3637E-05	19670	160513_QHF_FH_JSI11Kac_6	125.82	70.447			6.5035	7.7198	362.34	3	3	Median	NaN	NaN	NaN	0	0	Median	6.5035	7.7198	NaN	1	1	Median	0.38004	0.37652	449.17	2	2	Median	NaN	NaN	NaN	0	0	Median	56975000	39501000	17474000	0	0	0	7712300	1240800	6471600	49262000	38260000	11002000	0	0	0	22602	2196	21404	140497;140498;140499	190344;190345;190346	190345	2317		3	
HLTDAYFKK	2	Unmodified	1121.5869	0.58694431	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	23.9	23.878	3	0.00013209	20177	160511_QHF_FH_JSI12i_3	87.913	57.349			1.1494	1.1765	254.88	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1494	1.1765	254.88	2	2	Median	344530000	180410000	164120000	0	0	0	0	0	0	0	0	0	344530000	180410000	164120000	22603	2196	21404	140500;140501	190347;190348;190349;190350	190349			4	
HLTDTSHGVR	0	Unmodified	1121.5578	0.55776945	4115	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.0079	6.1035	3	0.047498	3700	160511_QHF_FH_JSI12i_3	19.456	12.076			2.9692	3.1035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9692	3.1035	NaN	1	1	Median	17849000	3981200	13868000	0	0	0	0	0	0	0	0	0	17849000	3981200	13868000	22604	4115	21405	140502	190351	190351			1	
HLTEYFTFK	1	Unmodified	1184.5866	0.58660996	2264	Q08209;P16298	PPP3CA;PPP3CB	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.4	5.31		1	3						1	1	3	1		59.49	56.932	2	0.0013004	50427	160511_QHF_FH_JSI11i_3	78.113	60.204			0.75998	0.90051	189.2	4	4	Median	NaN	NaN	NaN	0	0	Median	2.2891	2.7971	139.13	3	3	Median	0.074845	0.069619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	177140000	105600000	71539000	7977100	7977100	0	95827000	32840000	62987000	73335000	64784000	8551800	0	0	0	22605	2264	21406	140503;140504;140505;140506;140507	190352;190353;190354;190355;190356	190352			5	
HLTGEFEK	1	Unmodified	959.47125	0.47124585	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59		6	1						1	4	1	1	2	18.361	16.706	2	0.00045087	13985	160511_QHF_FH_JSI10i_2	128.69	82.968			9.1535	9.1849	223.06	8	8	Median	12.383	10.497	246.88	4	4	Median	8.5866	10.397	NaN	1	1	Median	11.576	11.669	NaN	1	1	Median	0.57992	0.6404	282.09	2	2	Median	1280700000	348460000	932210000	476940000	142880000	334060000	142500000	11073000	131420000	338290000	26631000	311660000	322940000	167870000	155070000	22606	2021	21407	140508;140509;140510;140511;140512;140513;140514;140515	190357;190358;190359;190360;190361;190362;190363;190364	190363			8	
HLTHAQSTLDAK	1	Unmodified	1320.6786	0.67861287	2634	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.4		17	12						7	9	7	11	9	13.213	11.817	2;3;4	4.0842E-11	8577	160511_QHF_FH_JSI11i_3	196.24	168.94			0.54776	0.56475	140.59	29	26	Median	0.66978	0.58734	85.148	8	6	Median	0.34238	0.42174	110.5	6	6	Median	0.54776	0.54331	151.97	9	8	Median	1.0434	1.1493	214.01	6	6	Median	6954700000	2997500000	3957200000	462390000	225290000	237090000	493900000	280260000	213630000	2181400000	1084100000	1097400000	3817000000	1407900000	2409100000	22607	2634	21408	140516;140517;140518;140519;140520;140521;140522;140523;140524;140525;140526;140527;140528;140529;140530;140531;140532;140533;140534;140535;140536;140537;140538;140539;140540;140541;140542;140543;140544;140545;140546;140547;140548;140549;140550;140551	190365;190366;190367;190368;190369;190370;190371;190372;190373;190374;190375;190376;190377;190378;190379;190380;190381;190382;190383;190384;190385;190386;190387;190388;190389;190390;190391;190392;190393;190394;190395;190396;190397;190398;190399;190400;190401;190402;190403;190404;190405	190368			41	
HLTHENVQR	0	Unmodified	1132.5738	0.57375386	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.7369	5.7847	2	0.0021298	3568	160511_QHF_FH_JSI11i_3	75.213	17.932			0.29395	0.28052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29395	0.28052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52414000	45016000	7398600	0	0	0	0	0	0	36519000	29120000	7398600	15896000	15896000	0	22608	2319	21409	140552;140553	190406;190407	190406			2	
HLTIVSLASR	0	Unmodified	1095.64	0.64004252	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		55.05	45.905	2	0.0051186	24784	160513_QHF_FH_JSI11Kac_6	74.173	33.144			0.52046	0.55952	571.26	2	2	Median	NaN	NaN	NaN	0	0	Median	0.0082551	0.0098521	NaN	1	1	Median	32.814	31.776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112350000	90565000	21789000	0	0	0	90432000	89743000	688100	21922000	821330	21101000	0	0	0	22609	4814	21410	140554;140555	190408;190409	190408			2	
HLTPEPDIVASTK	1	Unmodified	1406.7405	0.74054442	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	3	3	39.576	38.629	2;3	0.00017825	32905	160511_QHF_FH_JSI12i_2	79.089	66.592			4.158	3.85	227.35	6	6	Median	0.79361	0.69568	238.01	2	2	Median	0.61147	0.75655	389.52	2	2	Median	3.9735	3.9591	NaN	1	1	Median	5.6304	6.1541	NaN	1	1	Median	584840000	246020000	338810000	87994000	46583000	41411000	107340000	59746000	47589000	246570000	92032000	154540000	142940000	47662000	95277000	22610	2902	21411	140556;140557;140558;140559;140560;140561;140562;140563;140564;140565	190410;190411;190412;190413;190414;190415;190416;190417;190418;190419	190411			10	
HLTPVTLELGGK	1	Unmodified	1263.7187	0.71868677	1745;1561	P43353;P48448;P30838;P51648	ALDH3B1;ALDH3B2;ALDH3A1;ALDH3A2	Aldehyde dehydrogenase family 3 member B1;Aldehyde dehydrogenase family 3 member B2;Aldehyde dehydrogenase, dimeric NADP-preferring;Fatty aldehyde dehydrogenase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	3	1	54.057	53.302	2	1.4527E-05	45900	160511_QHF_FH_JSI11i_2	127.76	86.317			17.755	18.057	399.71	6	6	Median	16.204	13.657	NaN	1	1	Median	0.34195	0.42261	570.5	2	2	Median	0.76958	0.79254	521.41	2	2	Median	41.604	46.607	NaN	1	1	Median	594190000	296260000	297930000	61426000	3983300	57443000	185950000	106590000	79369000	274820000	182690000	92135000	71984000	3005100	68978000	22611	1561;1745	21412	140566;140567;140568;140569;140570;140571;140572	190420;190421;190422;190423;190424;190425;190426	190423			7	
HLTSMATSYFGK	1	Unmodified	1341.6387	0.63872189	5139	Q9NYZ1	TVP23B	Golgi apparatus membrane protein TVP23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	2	2	3	2	49.597	46.982	2;3	1.8662E-05	38448	160511_QHF_FH_JSI9i_3	174.41	156.55			8.1714	7.6299	258.5	5	5	Median	21.617	17.754	NaN	1	1	Median	8.8215	10.146	NaN	1	1	Median	1.2431	1.1697	265.22	2	2	Median	0.062103	0.06432	NaN	1	1	Median	438780000	173020000	265760000	78537000	1144000	77393000	50360000	8783000	41577000	130890000	54848000	76044000	178990000	108240000	70748000	22612	5139	21413	140573;140574;140575;140576;140577;140578;140579;140580;140581	190427;190428;190429;190430;190431;190432;190433;190434;190435	190431			9	
HLTSNSPR	0	Unmodified	910.46208	0.46207815	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	1	3	2	1	5.3236	0.88254	2	0.00066291	2742	160511_QHF_FH_JSI11i_3	123.69	71.39			0.1386	0.14988	41.507	4	4	Median	0.29325	0.2442	NaN	1	1	Median	0.11682	0.13756	45.716	2	2	Median	0.12263	0.1182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	567610000	509610000	57997000	5248100	4032600	1215600	385010000	347080000	37934000	175100000	158500000	16598000	2248800	0	2248800	22613	1065	21414	140582;140583;140584;140585;140586;140587;140588	190436;190437;190438;190439;190440;190441;190442	190436			7	
HLTYENVER	0	Unmodified	1159.5622	0.56218613	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		12	3						3	3	4	5	6	20.47	18.628	2;3	1.1095E-06	16063	160511_QHF_FH_JSI10i_2	144.77	123.31			1.9847	1.8888	224.29	13	13	Median	0.11751	0.10005	NaN	1	1	Median	0.19324	0.23212	226.78	3	3	Median	1.9847	1.8888	217.64	5	5	Median	9.6631	10.348	230.82	4	4	Median	2003900000	886310000	1117600000	300970000	124740000	176230000	345020000	243640000	101370000	906170000	356670000	549500000	451740000	161260000	290490000	22614	2009;2722	21415	140589;140590;140591;140592;140593;140594;140595;140596;140597;140598;140599;140600;140601;140602;140603;140604;140605;140606	190443;190444;190445;190446;190447;190448;190449;190450;190451;190452;190453;190454;190455;190456;190457;190458;190459;190460;190461;190462	190456			20	
HLTYNDFINK	1	Unmodified	1263.6248	0.62478638	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	47.721	46.742	2	6.2281E-05	40327	160511_QHF_FH_JSI11i_2	99.815	87.768			1.5148	1.4963	118.52	5	5	Median	1.145	1.0059	NaN	1	1	Median	0.60249	0.74632	186.54	2	2	Median	1.5148	1.4963	NaN	1	1	Median	4.0666	4.313	NaN	1	1	Median	114100000	53004000	61101000	17079000	7573200	9506200	30679000	19730000	10949000	42374000	20393000	21981000	23973000	5307400	18665000	22615	2197	21416	140607;140608;140609;140610;140611;140612;140613	190463;190464;190465;190466;190467;190468;190469	190467			7	
HLVAEFVQVLETLSHDTLVTTK	1	Unmodified	2479.3322	0.33223976	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	105.01	105.01	3	5.6452E-09	91499	160511_QHF_FH_JSI12i_3	98.132	90.329			0.98419	0.97788	25.001	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2145	1.167	NaN	1	0	Median	0.79756	0.81942	NaN	1	0	Median	25200000	13699000	11501000	0	0	0	0	0	0	9968700	4948200	5020600	15231000	8751100	6480200	22616	2213	21417	140614;140615	190470;190471;190472	190472			2	
HLVDEPQNLIK	1	Unmodified	1304.7089	0.70885036	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.3	3.9		9						1		1	3	2	4	47.019	44.848	2;3	3.9824E-21	39558	160511_QHF_FH_JSI10i_2	157.66	110.58		+	3.7672	4.1324	122.71	7	7	Median	22.684	19.444	NaN	1	1	Median	11.313	13.897	193.04	2	2	Median	7.9075	7.9162	158.4	2	2	Median	3.148	3.5054	23.27	2	2	Median	939060000	146710000	792360000	137010000	9838400	127170000	236310000	20148000	216160000	317120000	49487000	267630000	248620000	67234000	181390000	22617	50	21418	140616;140617;140618;140619;140620;140621;140622;140623;140624;140625	190473;190474;190475;190476;190477;190478;190479;190480;190481;190482	190482			10	
HLVESTNEMAPLK	1	Unmodified	1467.7392	0.73916421	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	3	3	2	39.125	38.233	2;3	1.0006E-09	33616	160511_QHF_FH_JSI9i_2	112.13	86.689			1.5885	1.6258	168.68	9	9	Median	0.5855	0.49473	NaN	1	1	Median	1.9182	2.3266	215.52	3	3	Median	1.5885	1.6258	186.84	3	3	Median	0.50225	0.55761	247.56	2	2	Median	626570000	304630000	321940000	70401000	34819000	35581000	189750000	78900000	110850000	274430000	141450000	132980000	91993000	49467000	42526000	22618	5135	21419	140626;140627;140628;140629;140630;140631;140632;140633;140634;140635	190483;190484;190485;190486;190487;190488;190489;190490;190491;190492	190486			10	
HLVFPLLEFLSVK	1	Unmodified	1540.9017	0.90173651	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.52		1	22						7	10	9	4	7	102.19	99.978	2;3	4.7476E-65	84609	160511_QHF_FH_JSI9i_3	203.94	168.43			1.039	0.93621	20.356	27	7	Median	1.2518	1.0578	16.002	8	2	Median	0.96224	1.1118	15.66	8	3	Median	0.88739	0.83687	18.492	4	0	Linear	0.83786	0.86379	26.592	7	2	Median	5167100000	2471200000	2695900000	697350000	304980000	392370000	730850000	378940000	351920000	963220000	498110000	465120000	2775700000	1289200000	1486500000	22619	1909	21420	140636;140637;140638;140639;140640;140641;140642;140643;140644;140645;140646;140647;140648;140649;140650;140651;140652;140653;140654;140655;140656;140657;140658;140659;140660;140661;140662;140663;140664;140665	190493;190494;190495;190496;190497;190498;190499;190500;190501;190502;190503;190504;190505;190506;190507;190508;190509;190510;190511;190512;190513;190514;190515;190516;190517;190518;190519;190520;190521;190522;190523;190524;190525;190526;190527;190528;190529;190530;190531;190532;190533;190534;190535;190536;190537;190538;190539;190540;190541;190542;190543;190544;190545	190526			53	
HLVGLWTADNATATNLLK	1	Unmodified	1937.0371	0.037060793	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.276	84.104	3	1.1272E-06	72957	160511_QHF_FH_JSI12i_3	104.26	88.134			0.14588	0.14947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14588	0.14947	NaN	1	1	Median	66338000	56433000	9905500	0	0	0	0	0	0	0	0	0	66338000	56433000	9905500	22620	486	21421	140666	190546	190546			1	
HLVGVCYTEDEAK	1	Unmodified	1519.6977	0.69769333	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	34.382	33.508	2	2.9318E-09	29312	160511_QHF_FH_JSI9i_2	104.22	93.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63424000	42985000	20439000	0	0	0	0	0	0	41925000	27585000	14340000	21499000	15400000	6098600	22621	905	21422	140667;140668;140669;140670;140671	190547;190548;190549;190550;190551;190552	190550			6	
HLVGVDSLIGPETQIGEK	1	Unmodified	1891.0051	0.005091963	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		4								2	2			74.135	73.356	2;3	0.00017655	65242	160511_QHF_FH_JSI10i_2	70.96	60.764			0.25336	1.0134	168.75	3	3	Plateau	0.25336	0.21669	NaN	1	1	Median	0.8352	1.0134	202.7	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95218000	56556000	38662000	21196000	18104000	3092000	74022000	38451000	35570000	0	0	0	0	0	0	22622	4946	21423	140672;140673;140674;140675	190553;190554;190555;190556	190556			4	
HLVLAGGSK	1	Unmodified	880.51305	0.51305109	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								2		1	14.738	14.801	2	0.006541	12987	160511_QHF_FH_JSI10i_2	55.549	24.831			9.8964	10.265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.8964	10.265	NaN	1	1	Median	114640000	11865000	102780000	0	0	0	0	0	0	0	0	0	114640000	11865000	102780000	22623	116	21424	140676;140677;140678	190557;190558;190559	190558			3	
HLVLPIALNK	1	Unmodified	1116.7019	0.70191449	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	66.759	66.641	2;3	1.1606E-06	57407	160511_QHF_FH_JSI12i_3	127.12	123.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171110000	94389000	76725000	0	0	0	0	0	0	59579000	32893000	26686000	111540000	61496000	50039000	22624	4250	21425	140679;140680;140681;140682;140683	190560;190561;190562;190563;190564	190563			5	
HLVMGDIPAAVNAFQEAASLLGK	1	Oxidation (M)	2367.2257	0.2256662	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	102.15	102.1	3	1.7381E-17	88652	160511_QHF_FH_JSI12i_3	138.66	124.64			1.0996	1.1218	16.278	3	1	Plateau	0.9576	0.83152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.115	1.0471	NaN	1	0	Median	1.0996	1.1386	NaN	1	0	Median	743790000	369640000	374150000	5345500	1627600	3717900	0	0	0	226770000	111660000	115110000	511680000	256350000	255320000	22625	1649	21426	140684;140685;140686	190565;190566;190567;190568;190569	190568		1311	5	
HLVMGDIPAAVNAFQEAASLLGK	1	Unmodified	2351.2308	0.23075158	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							2	4	4	3	102.98	102.9	2;3	9.8382E-122	89443	160511_QHF_FH_JSI12i_3	323.54	291.48			0.9009	0.99498	16.474	13	4	Median	0.97088	0.81798	27.704	2	0	Median	0.8185	1.005	17.096	4	2	Median	1.0881	1.0605	16.258	4	2	Median	1.0299	1.0531	7.2376	3	0	Plateau	3852100000	1906800000	1945300000	178380000	82521000	95858000	311760000	174580000	137170000	1319800000	547180000	772630000	2042100000	1102500000	939660000	22626	1649	21426	140687;140688;140689;140690;140691;140692;140693;140694;140695;140696;140697;140698;140699	190570;190571;190572;190573;190574;190575;190576;190577;190578;190579;190580;190581;190582;190583;190584;190585;190586;190587;190588;190589;190590;190591;190592	190591			22	
HLVQALQASLEK	1	Unmodified	1335.751	0.75104953	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	52.349	51.674	2	0.00015137	43763	160511_QHF_FH_JSI10i_3	99.973	63.592			2.554	2.5488	100.18	4	4	Median	NaN	NaN	NaN	0	0	Median	0.46807	0.54479	NaN	1	1	Median	3.1484	2.9896	77.596	2	2	Median	3.5541	3.7614	NaN	1	1	Median	140120000	49177000	90942000	12879000	0	12879000	24689000	19997000	4691700	83985000	26367000	57618000	18565000	2812300	15753000	22627	2269	21427	140700;140701;140702;140703;140704	190593;190594;190595;190596;190597	190595			5	
HLVSLTER	0	Unmodified	953.52943	0.52942943	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		22.869	22.869	2	0.00013607	19351	160511_QHF_FH_JSI11i_3	139.31	59.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46512000	46512000	0	0	0	0	0	0	0	46512000	46512000	0	0	0	0	22628	4473	21428	140705	190598	190598			1	
HLVSPEALDLLDK	1	Unmodified	1448.7875	0.78749461	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	75.483	74.425	2;3	9.1035E-17	65231	160511_QHF_FH_JSI11i_2	135.99	113.35			0.43498	0.53621	94.287	5	5	Median	0.36639	0.32131	NaN	1	1	Median	0.43498	0.53621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54741	0.5809	123.66	3	3	Median	132520000	83235000	49281000	18283000	13415000	4868400	47122000	30808000	16314000	0	0	0	67111000	39012000	28099000	22629	1165	21429	140706;140707;140708;140709;140710;140711;140712;140713	190599;190600;190601;190602;190603;190604;190605;190606	190605			8	
HLVVPGDTITTDTGFMR	0	Unmodified	1858.9247	0.92473315	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	71.983	71.142	2	0.00025971	62376	160511_QHF_FH_JSI11i_2	83.314	76.41			3.3081	3.427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3081	3.427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49945000	35562000	14383000	0	0	0	0	0	0	43922000	29539000	14383000	6022900	6022900	0	22630	2476	21430	140714;140715;140716	190607;190608;190609	190609			3	
HLVVVDNR	0	Unmodified	950.52976	0.52976379	1752	P51798	CLCN7	H(+)/Cl(-) exchange transporter 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	21.698	17.963	2	0.00093669	15254	160511_QHF_FH_JSI12i_2	88.029	56.093			0.50582	0.44009	117.77	5	5	Median	0.5165	0.44009	NaN	1	1	Median	0.50582	0.62675	NaN	1	1	Median	0.31525	0.31203	181.5	2	2	Median	0.078759	0.085997	NaN	1	1	Median	178770000	105990000	72787000	26917000	16804000	10113000	59767000	34457000	25310000	86527000	49633000	36895000	5562700	5093000	469730	22631	1752	21431	140717;140718;140719;140720;140721;140722	190610;190611;190612;190613;190614;190615	190610			6	
HLVYAVIR	0	Unmodified	969.57599	0.5759857	4054	Q96EQ0	SGTB	Small glutamine-rich tetratricopeptide repeat-containing protein beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	46.803	37.541	2	0.0055339	20188	160513_QHF_FH_JSI9Kac_6	83.287	49.772			3.715	3.5892	155.99	4	4	Median	0.89177	0.76674	166.2	2	2	Median	6.4401	7.7316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.8174	5.1874	NaN	1	1	Median	59888000	18997000	40892000	18454000	7784200	10670000	27835000	2501400	25333000	7689000	7689000	0	5910600	1022100	4888500	22632	4054	21432	140723;140724;140725;140726;140727	190616;190617;190618;190619;190620	190618			5	
HLVYESDK	1	Unmodified	989.48181	0.48181054	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.33		9	7					6	4	6	6	6	8	15.152	11.53	2	0.00018193	10055	160511_QHF_FH_JSI11i_2	122.13	122.13			0.28614	0.33832	233.84	25	21	Median	0.69069	0.58955	250.5	6	6	Median	0.84583	1.0237	231	6	6	Median	0.18789	0.17781	194.08	6	4	Median	0.33387	0.33832	289.23	7	5	Median	6856300000	3273300000	3583000000	1459800000	636230000	823580000	1588200000	956480000	631730000	2067100000	950210000	1116900000	1741200000	730420000	1010800000	22633	2652	21433	140728;140729;140730;140731;140732;140733;140734;140735;140736;140737;140738;140739;140740;140741;140742;140743;140744;140745;140746;140747;140748;140749;140750;140751;140752;140753	190621;190622;190623;190624;190625;190626;190627;190628;190629;190630;190631;190632;190633;190634;190635;190636;190637;190638;190639;190640;190641;190642;190643;190644;190645;190646;190647;190648;190649;190650;190651;190652	190636			32	
HLVYESDQNK	1	Unmodified	1231.5833	0.5833155	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.09		11	6					5	3	5	6	8	6	14.966	11.733	2;3	8.9746E-07	10376	160511_QHF_FH_JSI12i_2	124.23	78.512			0.26742	0.23615	235.16	15	15	Median	0.36439	0.30312	206.12	4	4	Median	0.16419	0.20351	292.2	3	3	Median	0.26742	0.26501	239.64	5	5	Median	0.20971	0.22529	334.71	3	3	Median	2237600000	1244000000	993610000	414500000	256600000	157900000	534030000	345610000	188430000	819510000	466970000	352530000	469570000	174830000	294740000	22634	388	21434	140754;140755;140756;140757;140758;140759;140760;140761;140762;140763;140764;140765;140766;140767;140768;140769;140770;140771;140772;140773;140774;140775;140776;140777;140778	190653;190654;190655;190656;190657;190658;190659;190660;190661;190662;190663;190664;190665;190666;190667;190668;190669;190670;190671;190672;190673;190674;190675;190676;190677;190678;190679;190680;190681;190682	190658			30	
HLWDYTFGPEK	1	Unmodified	1391.651	0.65100113	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.72		15	3						5	5	4	7	7	62.612	61.349	2;3	7.7398E-07	54259	160511_QHF_FH_JSI10i_2	119.68	79.329			0.69325	0.77792	111.15	17	17	Median	0.98821	0.85005	83.383	3	3	Median	0.40674	0.50333	107.26	3	3	Median	0.47485	0.48732	126.91	6	6	Median	1.5153	1.7304	121.41	5	5	Median	858020000	410630000	447400000	74821000	33143000	41678000	180880000	98931000	81951000	402670000	199560000	203110000	199650000	78993000	120660000	22635	1940	21435	140779;140780;140781;140782;140783;140784;140785;140786;140787;140788;140789;140790;140791;140792;140793;140794;140795;140796;140797;140798;140799;140800;140801	190683;190684;190685;190686;190687;190688;190689;190690;190691;190692;190693;190694;190695;190696;190697;190698;190699;190700;190701;190702;190703;190704;190705;190706	190698			24	
HLYDTGETK	1	Unmodified	1062.4982	0.49818889	3244	Q7RTP6	MICAL3	Protein-methionine sulfoxide oxidase MICAL3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		10.692	10.166	2	0.010474	8100	160511_QHF_FH_JSI10i_2	59.245	34.322			0.6191	0.76248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6191	0.76248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22473000	15638000	6835500	0	0	0	22473000	15638000	6835500	0	0	0	0	0	0	22636	3244	21436	140802;140803	190707;190708	190708			2	
HLYFWGYSEAAK	1	Unmodified	1470.6932	0.6932003	4310	Q99735	MGST2	Microsomal glutathione S-transferase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			70.14	62.535	2	0.00079169	34326	160513_QHF_FH_JSI10Kac_6	85.807	64.937			10.325	12.245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.325	12.245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78268000	8179400	70089000	0	0	0	78268000	8179400	70089000	0	0	0	0	0	0	22637	4310	21437	140804	190709	190709			1	
HLYHSSQNELAK	1	Unmodified	1425.7001	0.70007659	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.856	13.929	3	0.0047828	10798	160511_QHF_FH_JSI12i_3	49.28	39.993			0.15044	0.15479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15044	0.15479	NaN	1	1	Median	64983000	48316000	16667000	0	0	0	0	0	0	0	0	0	64983000	48316000	16667000	22638	2574	21438	140805	190710	190710			1	
HLYICDYHK	1	Unmodified	1247.5757	0.5757277	528	O75446	SAP30	Histone deacetylase complex subunit SAP30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		13.138	12.648	2	0.0038081	10157	160511_QHF_FH_JSI10i_2	69.344	39.535			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45628000	28998000	16630000	9900900	9900900	0	16630000	0	16630000	19097000	19097000	0	0	0	0	22639	528	21439	140806;140807;140808;140809	190711;190712;190713;190714	190714			4	
HLYNAAAFK	1	Unmodified	1033.5345	0.53451481	2321	Q12894	IFRD2	Interferon-related developmental regulator 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.46	27.419	2	0.01155	22905	160511_QHF_FH_JSI12i_3	48.756	26.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22640	2321	21440	140810	190715	190715			1	
HLYPNTPYAYTFWTYMMNAR	0	2 Oxidation (M)	2571.1351	0.13513663	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	2	1	5	81.51	73.093	2;3	3.3275E-19	38627	160513_QHF_FH_JSI12Kac_6	142.88	138.45			0.93007	1.0264	66.661	9	6	Median	1.0788	0.9226	145.62	2	2	Median	0.66152	0.79055	112.56	2	2	Median	0.8296	0.78526	NaN	1	0	Median	0.9599	1.0349	18.842	4	2	Median	3342800000	1743800000	1599000000	1073900000	497960000	575930000	1308400000	746840000	561580000	325500000	164670000	160830000	635030000	334340000	300690000	22641	1294	21441	140811;140812;140813;140814;140815;140816;140817;140818;140819;140820;140821	190716;190717;190718;190719;190720;190721;190722;190723;190724;190725;190726;190727;190728	190723		933;934	13	
HLYPNTPYAYTFWTYMMNAR	0	Oxidation (M)	2555.1402	0.14022201	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									32	6	9	6	11	87.579	79.364	2;3	1.147E-42	46822	160513_QHF_FH_JSI10Kac_6	226.65	207.32			0.56437	0.56857	91.848	27	26	Median	1.1878	1.0385	80.79	5	5	Median	0.41	0.49169	145.28	7	7	Median	0.56437	0.54536	55.99	5	4	Median	0.62166	0.65539	75.135	10	10	Median	9829400000	5328700000	4500700000	2097200000	980000000	1117200000	3475800000	1863300000	1612500000	1931200000	1127000000	804200000	2325200000	1358400000	966810000	22642	1294	21441	140822;140823;140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834;140835;140836;140837;140838;140839;140840;140841;140842;140843;140844;140845;140846;140847;140848;140849;140850;140851;140852;140853	190729;190730;190731;190732;190733;190734;190735;190736;190737;190738;190739;190740;190741;190742;190743;190744;190745;190746;190747;190748;190749;190750;190751;190752;190753;190754;190755;190756;190757;190758;190759;190760;190761;190762	190761		933;934	34	
HLYPNTPYAYTFWTYMMNAR	0	Unmodified	2539.1453	0.14530739	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	2.17				5					15	4	5	6	5	93.847	85.425	2;3	7.6126E-191	47528	160513_QHF_FH_JSI9Kac_6	258.8	252.97			1.002	1.1124	110.29	20	16	Median	1.3161	1.1357	171.5	4	4	Median	0.94668	1.0838	102.32	5	4	Median	1.6288	1.5866	122.6	6	4	Median	1.0688	1.1417	73.879	5	4	Median	31958000000	15184000000	16774000000	7715500000	2719700000	4995800000	14258000000	7632900000	6625300000	7733000000	3636900000	4096100000	2251400000	1194800000	1056700000	22643	1294	21441	140854;140855;140856;140857;140858;140859;140860;140861;140862;140863;140864;140865;140866;140867;140868;140869;140870;140871;140872;140873	190763;190764;190765;190766;190767;190768;190769;190770;190771;190772;190773;190774;190775;190776;190777;190778;190779;190780;190781;190782;190783	190775			21	
HLYTKDIDIHEVR	1	Acetyl (K)	1679.8631	0.86311917	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	3	3	57.89	48.477	2;3	4.6309E-20	26285	160513_QHF_FH_JSI11Kac_6	186.56	153.37			2.3145	2.1035	339.61	8	7	Median	2.7256	2.3309	270.95	2	1	Median	0.62652	0.74455	452.88	2	2	Median	0.53554	0.51837	454.51	2	2	Median	1.0432	1.0973	545.33	2	2	Median	992140000	500690000	491460000	255610000	123000000	132610000	322740000	166750000	156000000	195850000	111190000	84662000	217930000	99750000	118180000	22644	2161	21442	140874;140875;140876;140877;140878;140879;140880;140881;140882;140883	190784;190785;190786;190787;190788;190789;190790;190791;190792;190793;190794	190785	2276		11	
HLYTLDGGDIINALCFSPNR	0	Unmodified	2275.1056	0.10555106	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	100.51	100.37	2;3	9.6785E-17	86380	160511_QHF_FH_JSI12i_3	150.16	129.5			0.77784	0.85882	18.164	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.49225	0.60318	NaN	1	0	Median	0.68402	0.71461	NaN	1	0	Median	0.77784	0.86718	NaN	1	0	Median	235130000	164480000	70644000	0	0	0	58534000	44278000	14256000	77725000	53113000	24612000	98868000	67092000	31776000	22645	2061	21443	140884;140885;140886;140887;140888	190795;190796;190797;190798	190798			2	
HMALDMGNEIDTQNR	0	Unmodified	1743.7669	0.7668523	1919	P60880	SNAP25	Synaptosomal-associated protein 25	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.792	46.278	2	0.0093761	39808	160511_QHF_FH_JSI11i_2	46.706	40.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22646	1919	21444	140889	190799	190799			1	
HMEPQVK	1	Unmodified	867.42727	0.42727255	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.2916	7.6672	2	0.026669	5432	160511_QHF_FH_JSI12i_2	56.547	47.031			3.3541	3.5955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3541	3.5955	NaN	1	1	Median	42301000	10985000	31316000	0	0	0	0	0	0	0	0	0	42301000	10985000	31316000	22647	4023	21445	140890	190800	190800			1	
HMESLSQSK	1	Unmodified	1045.4862	0.48624399	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	9.5523	8.9758	2	0.00054208	6704	160511_QHF_FH_JSI12i_2	88.948	72.408			4.942	5.8381	61.474	2	2	Median	NaN	NaN	NaN	0	0	Median	7.2404	9.0169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.3732	3.78	NaN	1	1	Median	244580000	45079000	199500000	0	0	0	174730000	26520000	148210000	0	0	0	69848000	18559000	51289000	22648	4069	21446	140891;140892	190801;190802;190803	190801			3	
HMGGILAVANIR	0	Unmodified	1250.6918	0.69176051	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			67.522	59.2	3	3.5831E-08	32594	160513_QHF_FH_JSI10Kac_6	123.86	87.179			0.064814	0.077441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.064814	0.077441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51121000	39590000	11531000	7909400	0	7909400	43212000	39590000	3621500	0	0	0	0	0	0	22649	1615	21447	140893;140894	190804;190805	190805			2	
HMGGILAVANIR	0	Oxidation (M)	1266.6867	0.68667513	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			55.792	47.253	3	0.019267	26033	160513_QHF_FH_JSI10Kac_6	31.478	23.911			0.82239	0.941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82239	0.941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13168000	7525600	5642400	0	0	0	13168000	7525600	5642400	0	0	0	0	0	0	22650	1615	21447	140895	190806	190806		1290	1	
HMGLMLATCSADGIVR	0	Unmodified	1730.8266	0.82661579	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.327	65.033	2	1.513E-16	56190	160511_QHF_FH_JSI12i_3	117.67	102.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22651	4042	21448	140896	190807	190807			1	
HMILAYSK	1	Unmodified	961.50552	0.50552287	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			37.907	28.875	2	0.0057548	16221	160513_QHF_FH_JSI10Kac_6	67.169	55.948			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5267100	0	5267100	5267100	0	5267100	0	0	0	0	0	0	0	0	0	22652	5352	21449	140897;140898	190808;190809	190809			2	
HMIMANPQMQQLMER	0	Unmodified	1856.8518	0.85178468	4964	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.391	61.391	3	0.00021139	54577	160511_QHF_FH_JSI11i_3	57.794	54.98			3.1597	2.9953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1597	2.9953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24311000	2911900	21399000	0	0	0	0	0	0	24311000	2911900	21399000	0	0	0	22653	4964	21450	140899	190810	190810			1	
HMISFLLGASR	0	Unmodified	1230.6543	0.65431237	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.206	65.834	2	0.014646	36235	160513_QHF_FH_JSI10Kac_6	60.298	42.902			3.2238	3.8052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.2238	3.8052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24938000	5236500	19702000	0	0	0	24938000	5236500	19702000	0	0	0	0	0	0	22654	5468	21451	140900	190811	190811			1	
HMLADVFSVK	1	Unmodified	1145.5903	0.59031513	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	60.926	59.967	2;3	8.6371E-07	51774	160511_QHF_FH_JSI12i_2	123.86	105.08			0.27925	0.34171	79.874	7	7	Median	0.24458	0.21122	NaN	1	1	Median	0.43184	0.53554	63.543	2	2	Median	0.893	0.91033	114.07	2	2	Median	0.24696	0.2764	15.014	2	2	Median	217650000	140290000	77353000	64827000	45883000	18944000	33487000	20054000	13433000	40047000	18035000	22013000	79285000	56321000	22964000	22655	4292	21452	140901;140902;140903;140904;140905;140906;140907;140908;140909	190812;190813;190814;190815;190816;190817;190818;190819;190820	190814			9	
HMLDLQK	1	Unmodified	883.45857	0.45857268	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.398	23.054	2	0.01483	19222	160511_QHF_FH_JSI11i_2	65.252	46.447			5.0367	5.0091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0367	5.0091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32250000	2627600	29622000	0	0	0	0	0	0	32250000	2627600	29622000	0	0	0	22656	4944	21453	140910	190821	190821			1	
HMLPSGFR	0	Unmodified	943.46981	0.46980607	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							2	3			29.569	28.209	2	0.0027441	22722	160511_QHF_FH_JSI9i_3	85.265	58.135			0.79308	0.84294	273.84	4	4	Median	1.4419	1.1757	368.41	2	2	Median	0.73515	0.84294	296.86	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	458320000	246170000	212150000	264100000	126970000	137130000	194220000	119200000	75013000	0	0	0	0	0	0	22657	2037	21454	140911;140912;140913;140914;140915	190822;190823;190824;190825;190826;190827;190828	190825			7	
HMLPSGFRK	1	Unmodified	1071.5648	0.56476908	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			24.492	23.237	3	0.0023943	19051	160511_QHF_FH_JSI10i_3	44.203	33.298			0.90405	1.0685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90405	1.0685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26502000	12473000	14029000	0	0	0	26502000	12473000	14029000	0	0	0	0	0	0	22658	2037	21455	140916	190829	190829			1	
HMLPTVLR	0	Unmodified	965.54806	0.54805639	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.81		2	8						1	4	2	3	2	40.581	38.601	2	0.00020461	32136	160511_QHF_FH_JSI10i_3	134.66	90.216			4.0595	3.9281	279.38	9	9	Median	0.92092	0.78407	285.12	4	4	Median	1.1623	1.3505	447.13	2	2	Median	0.09771	0.089992	NaN	1	1	Median	10.27	10.96	125.2	2	2	Median	2053400000	1228900000	824530000	668000000	377580000	290420000	730580000	500410000	230170000	363380000	322370000	41016000	291480000	28562000	262920000	22659	1345	21456	140917;140918;140919;140920;140921;140922;140923;140924;140925;140926;140927	190830;190831;190832;190833;190834;190835;190836;190837;190838;190839;190840;190841;190842;190843;190844	190835			15	
HMLPTVLR	0	Oxidation (M)	981.54297	0.54297101	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			29.63	28.268	2	0.045383	23021	160511_QHF_FH_JSI9i_3	41.652	24.688			1.1904	1.1258	25.672	2	0	Median	1.1581	0.93892	NaN	1	0	Median	1.2235	1.3499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74733000	34927000	39806000	44546000	18170000	26377000	30187000	16757000	13430000	0	0	0	0	0	0	22660	1345	21456	140928;140929	190845	190845			1	
HMLQVDPMK	1	Unmodified	1097.5362	0.53617107	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.955	35.532	2	0.013094	30241	160511_QHF_FH_JSI11i_2	56.729	42.572			0.18265	0.18346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18265	0.18346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132030000	106140000	25887000	0	0	0	0	0	0	132030000	106140000	25887000	0	0	0	22661	2356	21457	140930	190846	190846			1	
HMMAFIEQEANEK	1	Unmodified	1576.7014	0.7013985	1455	P36543;Q96A05	ATP6V1E1;ATP6V1E2	V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	2	4	3	53.481	53.083	2;3	5.5202E-06	46831	160511_QHF_FH_JSI10i_2	120.06	92.049			0.77747	0.95875	188.22	6	6	Median	NaN	NaN	NaN	0	0	Median	0.77747	0.95875	92.881	2	2	Median	1.3336	1.2781	353.3	2	2	Median	1.137	1.1572	206.98	2	2	Median	286750000	103990000	182760000	11184000	11184000	0	31264000	12465000	18799000	139780000	48879000	90898000	104530000	31463000	73063000	22662	1455	21458	140931;140932;140933;140934;140935;140936;140937;140938;140939;140940;140941	190847;190848;190849;190850;190851;190852;190853;190854;190855;190856;190857;190858;190859	190854			13	
HMNSAGVLATLR	0	Unmodified	1268.6659	0.66593969	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							1	3			44.833	43.272	2;3	0.00026354	35243	160511_QHF_FH_JSI9i_3	58.754	48.866			3.7917	3.6818	168.61	4	4	Median	4.6576	3.7584	NaN	1	1	Median	0.62943	0.72422	197.55	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139690000	47548000	92138000	47955000	7210600	40745000	91730000	40337000	51393000	0	0	0	0	0	0	22663	738	21459	140942;140943;140944;140945	190860;190861;190862;190863	190863			4	
HMNSVPQK	1	Unmodified	939.45964	0.45963531	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	6.9984	6.6825	2	0.0017409	4685	160511_QHF_FH_JSI12i_2	98.523	71.921			4.9133	5.5022	160.46	9	8	Median	7.1788	6.3319	NaN	1	1	Median	1.6221	1.9845	241.66	2	2	Median	9.721	9.7331	176.21	3	2	Median	0.43514	0.46594	147.7	3	3	Median	607200000	272650000	334550000	46065000	5679400	40386000	147160000	73878000	73287000	183310000	80346000	102960000	230660000	112750000	117910000	22664	1895	21460	140946;140947;140948;140949;140950;140951;140952;140953;140954;140955	190864;190865;190866;190867;190868;190869;190870;190871;190872;190873	190866			10	
HMQANPEPPKK	2	Unmodified	1275.6394	0.63939059	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	8.4045	8.4533	2;3	0.00093432	5923	160511_QHF_FH_JSI12i_3	77.677	72.579			0.66126	0.64764	88.006	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55763	0.52199	104.05	2	2	Median	0.77233	0.79767	103.01	2	2	Median	555930000	298180000	257750000	0	0	0	0	0	0	264590000	141440000	123140000	291350000	156740000	134610000	22665	2668	21461	140956;140957;140958;140959;140960	190874;190875;190876;190877;190878	190878			5	
HMSEFMECNLNELVK	1	Unmodified	1879.8267	0.82667537	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		75.069	74.377	2;3	1.3458E-16	65543	160511_QHF_FH_JSI11i_2	122.51	89.286			0.25231	0.30178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25231	0.30178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39521000	20289000	19232000	0	0	0	26410000	20289000	6120400	13112000	0	13112000	0	0	0	22666	1264	21462	140961;140962;140963	190879;190880;190881	190880			3	
HMSVSSIK	1	Unmodified	887.45349	0.4534873	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	14.538	14.399	2	0.0013379	11899	160511_QHF_FH_JSI10i_2	106.36	54.569			0.80057	0.85736	296.51	4	4	Median	NaN	NaN	NaN	0	0	Median	6.9964	8.5559	NaN	1	1	Median	1.1418	1.0786	357.81	2	2	Median	0.048179	0.049123	NaN	1	1	Median	671280000	450610000	220660000	0	0	0	83507000	11424000	72083000	343590000	200000000	143590000	244180000	239190000	4990400	22667	1086	21463	140964;140965;140966;140967;140968;140969	190882;190883;190884;190885;190886;190887	190886			6	
HMSVSSIK	1	Oxidation (M)	903.4484	0.44840192	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	14.166	14.203	2	0.028734	10958	160511_QHF_FH_JSI12i_3	47.082	26.8			2.1767	2.0606	13.289	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4695	2.2636	NaN	1	0	Median	1.9186	1.8758	NaN	1	0	Median	71978000	23270000	48708000	0	0	0	0	0	0	28244000	8757200	19487000	43734000	14512000	29221000	22668	1086	21463	140970;140971	190888	190888			1	
HMVFLGGAVLADIMK	1	Unmodified	1600.8469	0.84694052	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.27			7						12	5	5	4	5	95.427	90.133	2;3	3.3145E-21	84029	160511_QHF_FH_JSI10i_3	190.53	166.46			0.74062	0.84552	170.82	17	9	Median	1.3185	1.0801	194.41	5	2	Median	0.61769	0.71541	222.87	4	2	Median	0.87452	0.83949	173.7	4	3	Median	0.93848	0.94725	99.36	4	2	Linear	4637400000	2341600000	2295800000	863470000	307430000	556040000	955610000	505620000	449990000	1181100000	642730000	538360000	1637300000	885860000	751410000	22669	1940	21464	140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985;140986;140987;140988;140989;140990	190889;190890;190891;190892;190893;190894;190895;190896;190897;190898;190899;190900;190901;190902;190903;190904;190905;190906;190907;190908;190909;190910;190911;190912	190894			24	
HMVFLGGAVLADIMK	1	Oxidation (M)	1616.8419	0.84185515	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	1	2		1	91.644	89.832	3	0.00012218	79714	160511_QHF_FH_JSI10i_3	71.548	64.004			1.073	1.0788	108.27	4	3	Median	1.2296	1.048	NaN	1	1	Median	1.7128	2.0127	84.11	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24288	0.25847	NaN	1	1	Median	89481000	40152000	49329000	9757900	5857500	3900400	58921000	20000000	38922000	0	0	0	20802000	14295000	6506700	22670	1940	21464	140991;140992;140993;140994	190913;190914;190915;190916;190917	190914		1606;1607	5	
HMVMQKLLR	1	Acetyl (K)	1196.6522	0.65220388	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	59.515	50.194	2	1.444E-05	26532	160513_QHF_FH_JSI9Kac_6	121.74	87.655			0.40973	0.49199	25.885	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.40973	0.49199	NaN	1	1	Median	0.80826	0.78886	NaN	1	1	Median	0.49761	0.51832	NaN	1	1	Median	417980000	177790000	240190000	27959000	0	27959000	260580000	117300000	143280000	69999000	27131000	42868000	59439000	33360000	26079000	22671	5315	21465	140995;140996;140997;140998;140999;141000;141001	190918;190919;190920;190921;190922;190923;190924	190920	3362		7	
HMYHSLYLK	1	Unmodified	1190.5906	0.59064948	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.26			33						57	28	17	17	28	41.102	35.113	2;3	3.9907E-17	18875	160513_QHF_FH_JSI9Kac_6	147.51	127.2			0.93716	0.9767	63.706	73	35	Median	0.83061	0.68557	34.722	25	13	Median	0.7444	0.86659	50.003	14	7	Median	1.0596	1.021	59.978	11	4	Median	1.1682	1.2962	67.261	23	11	Median	5031200000	2014800000	3016400000	1092700000	554380000	538370000	752600000	372130000	380470000	608250000	230320000	377920000	2577600000	857940000	1719700000	22672	2129	21466	141002;141003;141004;141005;141006;141007;141008;141009;141010;141011;141012;141013;141014;141015;141016;141017;141018;141019;141020;141021;141022;141023;141024;141025;141026;141027;141028;141029;141030;141031;141032;141033;141034;141035;141036;141037;141038;141039;141040;141041;141042;141043;141044;141045;141046;141047;141048;141049;141050;141051;141052;141053;141054;141055;141056;141057;141058;141059;141060;141061;141062;141063;141064;141065;141066;141067;141068;141069;141070;141071;141072;141073;141074;141075;141076;141077;141078;141079;141080;141081;141082;141083;141084;141085;141086;141087;141088;141089;141090;141091	190925;190926;190927;190928;190929;190930;190931;190932;190933;190934;190935;190936;190937;190938;190939;190940;190941;190942;190943;190944;190945;190946;190947;190948;190949;190950;190951;190952;190953;190954;190955;190956;190957;190958;190959;190960;190961;190962;190963;190964;190965;190966;190967;190968;190969;190970;190971;190972;190973;190974;190975;190976;190977;190978;190979;190980;190981;190982;190983;190984;190985;190986;190987;190988;190989;190990;190991;190992;190993;190994;190995;190996;190997;190998;190999;191000;191001;191002;191003;191004;191005;191006;191007;191008;191009;191010;191011;191012;191013;191014;191015;191016;191017;191018;191019;191020;191021;191022;191023;191024;191025;191026;191027;191028;191029;191030;191031;191032;191033;191034;191035;191036;191037;191038;191039	190970			110	
HMYHSLYLK	1	Oxidation (M)	1206.5856	0.5855641	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	2.71			1						21	5	2	3	12	38.809	30.15	3	0.00012725	14223	160513_QHF_FH_JSI12Kac_6	78.113	58.798			1.205	1.3129	32.548	19	2	Median	1.1153	0.97125	18.316	5	1	Median	1.001	1.1407	2.1832	2	0	Median	1.4038	1.3836	51.91	3	1	Median	1.2555	1.3666	24.604	9	0	Median	243760000	101280000	142480000	90415000	38031000	52385000	25722000	12127000	13595000	34783000	9689000	25094000	92837000	41435000	51402000	22673	2129	21466	141092;141093;141094;141095;141096;141097;141098;141099;141100;141101;141102;141103;141104;141105;141106;141107;141108;141109;141110;141111;141112;141113	191040;191041;191042;191043;191044;191045;191046;191047;191048;191049;191050;191051;191052;191053;191054;191055;191056;191057;191058;191059;191060;191061	191056		1785	21	
HMYVFGDFK	1	Unmodified	1142.5219	0.52190122	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.72		4	1						8	2	3	5	3	63.792	57.145	2;3	6.0548E-05	31240	160513_QHF_FH_JSI10Kac_6	103.56	87.36			0.62385	0.73221	135.78	11	11	Median	0.51876	0.43409	90.638	2	2	Median	0.62385	0.73221	196.63	3	3	Median	3.3526	3.2007	113.51	4	4	Linear	0.79514	0.89236	218.68	2	2	Median	262260000	93960000	168300000	48580000	20561000	28019000	83066000	36280000	46785000	77953000	27158000	50795000	52667000	9960400	42706000	22674	4390	21467	141114;141115;141116;141117;141118;141119;141120;141121;141122;141123;141124;141125;141126	191062;191063;191064;191065;191066;191067;191068;191069;191070;191071;191072;191073;191074	191073			13	
HNALIQEVISQSR	0	Unmodified	1493.795	0.79503961	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							1	3			57.033	55.489	2	8.2153E-07	49360	160511_QHF_FH_JSI10i_2	89.548	57.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23026000	12390000	10635000	0	0	0	23026000	12390000	10635000	0	0	0	0	0	0	22675	2454	21468	141127;141128;141129;141130	191075;191076;191077;191078	191078			4	
HNDDEQYAWESSAGGSFTVR	0	Unmodified	2254.9516	0.95155284	898;880	P08238;P07900;Q14568	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.16	0.367		21	4							4	6	2	13	59.825	58.768	2;3	1.2235E-11	49127	160511_QHF_FH_JSI12i_3	88.036	80.042			1.11	1.2319	37.111	18	12	Median	0.83963	0.71722	4.0592	4	2	Median	0.87374	1.0763	27.53	4	3	Median	1.9534	1.9462	6.2052	2	1	Median	1.2479	1.395	18.386	8	6	Median	847480000	400720000	446760000	218150000	118530000	99620000	158210000	85347000	72862000	102110000	28972000	73135000	369020000	167880000	201140000	22676	898;880	21469	141131;141132;141133;141134;141135;141136;141137;141138;141139;141140;141141;141142;141143;141144;141145;141146;141147;141148;141149;141150;141151;141152;141153;141154;141155	191079;191080;191081;191082;191083;191084;191085;191086;191087;191088;191089;191090;191091;191092;191093;191094;191095;191096;191097;191098;191099;191100;191101;191102;191103;191104	191102			24	
HNDLDDVGK	1	Unmodified	1011.4621	0.46213773	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							4	2	3	2	12.677	12.168	2	3.4305E-05	9835	160511_QHF_FH_JSI10i_2	100.48	54.461			0.61112	0.62311	53.438	11	9	Median	1.0285	0.88925	72.156	4	4	Median	0.57755	0.69383	34.47	2	1	Median	0.56306	0.54304	68.657	3	3	Plateau	0.58375	0.62412	22.479	2	1	Median	2971700000	1665500000	1306200000	601760000	332610000	269160000	700150000	425080000	275070000	961290000	517700000	443590000	708460000	390070000	318390000	22677	1664	21470	141156;141157;141158;141159;141160;141161;141162;141163;141164;141165;141166	191105;191106;191107;191108;191109;191110;191111;191112;191113;191114;191115;191116;191117	191116			13	
HNDMADLER	0	Unmodified	1099.4717	0.47165656	272	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.535	15.558	2	0.0040651	12680	160511_QHF_FH_JSI12i_2	57.59	46.716			1.0214	1.1436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0214	1.1436	NaN	1	0	Median	30297000	14878000	15419000	0	0	0	0	0	0	0	0	0	30297000	14878000	15419000	22678	272	21471	141167	191118	191118			1	
HNDMPIYEAADK	1	Unmodified	1402.6187	0.61871473	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	32.463	31.563	2	3.4563E-05	27605	160511_QHF_FH_JSI10i_2	113.22	101.38			1.0902	1.1486	45.927	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1133	1.3728	77.453	2	2	Median	1.138	1.1761	NaN	1	0	Median	1.0443	1.1218	NaN	1	1	Median	107180000	50832000	56346000	0	0	0	41188000	17922000	23266000	40085000	20256000	19830000	25905000	12654000	13251000	22679	2947	21472	141168;141169;141170;141171;141172	191119;191120;191121;191122;191123;191124	191123			6	
HNEETGDNVGPLIIK	1	Unmodified	1634.8264	0.82639932	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	3.09	4	9	1				1			2	4	4	5	47.82	46.311	2;3	5.5032E-40	40230	160511_QHF_FH_JSI10i_2	196.57	162.61			0.79586	0.94613	25.999	14	3	Median	1.2216	1.0347	3.2243	2	0	Median	0.76392	0.91919	8.4894	4	1	Median	1.6463	1.684	26.333	3	2	Plateau	0.72964	0.82	16.726	5	0	Median	2768200000	1241100000	1527100000	304270000	155020000	149250000	617860000	320860000	297000000	1344500000	479980000	864490000	501640000	285240000	216400000	22680	5144	21473	141173;141174;141175;141176;141177;141178;141179;141180;141181;141182;141183;141184;141185;141186;141187	191125;191126;191127;191128;191129;191130;191131;191132;191133;191134;191135;191136;191137;191138;191139;191140;191141;191142;191143;191144;191145;191146;191147;191148;191149;191150;191151;191152;191153;191154;191155	191152			31	
HNEETGDNVGPLIIKK	2	Acetyl (K)	1804.9319	0.93192702	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	61.476	50.788	3	0.0014409	28340	160513_QHF_FH_JSI12Kac_4	67.605	56.971			0.39271	0.4187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39271	0.4187	NaN	1	1	Median	3105400	2116900	988540	0	0	0	0	0	0	0	0	0	3105400	2116900	988540	22681	5144	21474	141188	191156	191156	3326		1	
HNEFDFISGTR	0	Unmodified	1321.6051	0.60511357	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	3	2	2	2	51.869	50.893	2;3	3.7413E-07	43843	160511_QHF_FH_JSI11i_2	118.4	113.09			0.9519	0.98563	10.258	8	0	Median	1.0545	0.90493	8.0898	2	0	Median	0.79778	0.96071	11.242	2	0	Median	0.98504	1.0018	14.352	2	0	Median	0.9601	1.0665	7.1637	2	0	Median	745910000	358100000	387820000	114170000	52378000	61794000	188360000	97835000	90530000	293660000	131570000	162090000	149720000	76316000	73399000	22682	678	21475	141189;141190;141191;141192;141193;141194;141195;141196;141197	191157;191158;191159;191160;191161;191162;191163;191164;191165;191166;191167	191162			11	
HNELTGDNVGPLILK	1	Unmodified	1618.8679	0.8678702	3546	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									1	1	4	62.995	61.936	2;3	0.00010163	53151	160511_QHF_FH_JSI12i_2	112.44	95.524			1.7202	1.8806	58.984	5	5	Median	NaN	NaN	NaN	0	0	Median	5.0873	6.2247	NaN	1	1	Median	2.9918	3.0684	NaN	1	1	Median	1.5016	1.6937	12.586	3	3	Median	1373400000	374070000	999370000	0	0	0	578880000	109480000	469400000	480700000	144980000	335720000	313870000	119620000	194250000	22683	3546	21476	141198;141199;141200;141201;141202;141203	191168;191169;191170;191171;191172;191173	191169			6	
HNELTGDNVGPLILKK	2	Acetyl (K)	1788.9734	0.9733979	3546	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.178	64.482	3	0.025005	34372	160513_QHF_FH_JSI11Kac_5	41.386	30.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1649600	1649600	0	0	0	0	0	0	0	1649600	1649600	0	0	0	0	22684	3546	21477	141204	191174	191174	2883		1	
HNESVVK	1	Unmodified	811.41882	0.41881635	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.16		7	1					2		3	1	3	3	4.6696	2.4559	2	0.0051237	2126	160511_QHF_FH_JSI11i_2	103.83	52.867			0.25689	0.28551	215.58	9	9	Median	0.67712	0.57333	289.63	2	2	Median	10.539	13.119	NaN	1	1	Median	0.22834	0.22581	228.79	3	3	Median	0.25689	0.28551	215.18	3	3	Median	2493600000	1146500000	1347100000	612540000	249080000	363460000	375890000	47120000	328770000	737140000	465290000	271850000	768000000	385030000	382970000	22685	144	21478	141205;141206;141207;141208;141209;141210;141211;141212;141213;141214	191175;191176;191177;191178;191179;191180;191181;191182;191183;191184	191181			10	
HNFLLLFMK	1	Unmodified	1161.6369	0.63687139	632	O94964	SOGA1	Protein SOGA1;N-terminal form;C-terminal 80 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	86.255	77.994	2;3	1.2266E-05	41578	160513_QHF_FH_JSI12Kac_6	107.29	91.151			2.0015	1.8725	60.953	4	3	Median	2.9699	2.5349	NaN	1	0	Median	2.7208	3.1916	NaN	1	1	Median	1.4724	1.3832	NaN	1	1	Median	0.78389	0.82752	NaN	1	1	Median	362280000	84005000	278270000	90161000	22209000	67952000	49556000	6174500	43381000	144530000	31616000	112920000	78031000	24006000	54025000	22686	632	21479	141215;141216;141217;141218;141219;141220	191185;191186;191187;191188;191189;191190	191188			6	
HNFTIMTK	1	Unmodified	990.49569	0.49568646	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	26.591	26.124	2	0.0020161	21430	160511_QHF_FH_JSI12i_3	93.178	62.509			0.33224	0.37033	134.01	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0675	1.3069	155.81	2	2	Median	0.20519	0.18766	NaN	1	1	Median	0.31021	0.3158	NaN	1	1	Median	225110000	169780000	55330000	0	0	0	46020000	24500000	21520000	70291000	58704000	11588000	108800000	86580000	22222000	22687	5561	21480	141221;141222;141223;141224;141225	191191;191192;191193;191194;191195	191195			5	
HNFTPLAR	0	Unmodified	954.50355	0.50354903	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.56	0.497		4	5							3	4	2		21.377	20.497	2	0.0013783	16412	160511_QHF_FH_JSI9i_3	105.57	79.949			1.0805	1.0852	104.94	9	8	Median	1.2791	1.0852	75.263	3	2	Median	0.64063	0.76957	133.79	4	4	Median	1.8076	1.7705	123.01	2	2	Median	NaN	NaN	NaN	0	0	Median	1355200000	707850000	647370000	499900000	246480000	253420000	592480000	366010000	226470000	262840000	95369000	167470000	0	0	0	22688	1545	21481	141226;141227;141228;141229;141230;141231;141232;141233;141234	191196;191197;191198;191199;191200;191201;191202;191203;191204;191205;191206	191200			11	
HNGAAEPEPEAETAR	0	Unmodified	1577.707	0.70701246	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	10.863	10.237	2	0.00015211	7996	160511_QHF_FH_JSI9i_2	108.37	93.171			0.76352	0.83023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76352	0.83023	NaN	1	0	Median	21435000	7396700	14038000	6858500	0	6858500	0	0	0	0	0	0	14577000	7396700	7179900	22689	5608	21482	141235;141236	191207;191208	191208			2	
HNGICIYFSR	0	Unmodified	1265.5975	0.59752577	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	54.624	45.409	3	0.00032662	24929	160513_QHF_FH_JSI10Kac_6	73.841	70.618			0.90682	0.99953	8.4576	3	0	Median	1.1088	0.89971	NaN	1	0	Median	0.89293	1.0636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90682	0.99953	NaN	1	0	Median	106480000	46750000	59734000	15442000	6317700	9124700	77302000	35158000	42145000	0	0	0	13740000	5274800	8464800	22690	558	21483	141237;141238;141239	191209;191210;191211;191212	191211			4	
HNGPNDASDGTVR	0	Unmodified	1338.5913	0.59125442	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	3	2	2	5.7679	5.3619	2;3	4.8758E-16	3466	160511_QHF_FH_JSI10i_2	167.71	148.93			0.87735	0.95326	14.553	8	0	Median	0.96098	0.81563	10.069	2	0	Median	0.77575	0.95399	12.805	2	0	Median	1.1463	1.1538	1.5608	2	0	Median	0.84823	0.95326	2.4339	2	0	Median	1112400000	579400000	533000000	233560000	114200000	119360000	218480000	132720000	85756000	363380000	181670000	181710000	296980000	150810000	146170000	22691	1382	21484	141240;141241;141242;141243;141244;141245;141246;141247;141248	191213;191214;191215;191216;191217;191218;191219;191220;191221;191222	191222			10	
HNGTGGKSIYGEK	2	Acetyl (K)	1388.6684	0.66844211	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.603							6	27	10	7	15	11	10	23.212	14.447	2;3	1.9217E-31	8773	160513_QHF_FH_JSI10Kac_5	178.15	113.85			0.8056	0.76704	139.03	38	3	Median	1.1461	0.9968	20.417	7	0	Median	0.83724	1.0056	23.681	12	0	Median	0.77381	0.74368	268.71	10	3	Median	0.66546	0.74065	31.968	9	0	Median	3966500000	1746000000	2220500000	639560000	269900000	369670000	1053800000	553190000	500630000	912360000	379760000	532600000	1360800000	543150000	817650000	22692	2040	21485	141249;141250;141251;141252;141253;141254;141255;141256;141257;141258;141259;141260;141261;141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282;141283;141284;141285;141286;141287;141288;141289;141290;141291	191223;191224;191225;191226;191227;191228;191229;191230;191231;191232;191233;191234;191235;191236;191237;191238;191239;191240;191241;191242;191243;191244;191245;191246;191247;191248;191249;191250;191251;191252;191253;191254;191255;191256;191257;191258;191259;191260;191261;191262;191263;191264;191265;191266;191267;191268;191269;191270;191271;191272;191273;191274;191275;191276;191277;191278;191279;191280;191281;191282;191283;191284;191285;191286;191287;191288;191289;191290;191291;191292;191293;191294;191295;191296;191297;191298;191299;191300	191275	2097;2098		76	
HNIIYVNGSVPGHK	1	Unmodified	1533.8052	0.80521036	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	11.7	6.13			1						2	1	1		1	37.535	31.602	3	0.02436	26313	160511_QHF_FH_JSI12i_3	45.825	33.443			0.91002	0.7892	30.378	3	1	Median	0.91002	0.7892	NaN	1	0	Median	1.1293	1.3279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78718	0.78025	NaN	1	0	Median	54529000	32308000	22221000	2700400	1427100	1273300	5895500	2632100	3263400	0	0	0	45933000	28249000	17685000	22693	919	21486	141292;141293;141294	191301;191302;191303	191302			2	
HNIMDFAMPYFIQVMK	1	Unmodified	1983.9409	0.94091726	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.7		6	5						8	4	6	5	4	99.811	96.035	2;3	1.0894E-88	52581	160513_QHF_FH_JSI10Kac_6	242.43	213.13			1.0559	1.1988	35.002	18	3	Median	1.4335	1.2192	30.989	4	1	Median	0.98244	1.2115	11.144	5	0	Median	1.2264	1.1987	28.959	5	1	Median	0.99258	1.0671	60.465	4	1	Median	6453500000	3091100000	3362400000	1129600000	442550000	687100000	1779400000	921590000	857810000	1922200000	895310000	1026800000	1622300000	831660000	790640000	22694	2155	21487	141295;141296;141297;141298;141299;141300;141301;141302;141303;141304;141305;141306;141307;141308;141309;141310;141311;141312;141313	191304;191305;191306;191307;191308;191309;191310;191311;191312;191313;191314;191315;191316;191317;191318;191319;191320;191321;191322;191323;191324;191325;191326;191327;191328;191329;191330;191331;191332;191333	191333			29	
HNIMDFAMPYFIQVMK	1	Oxidation (M)	1999.9358	0.93583189	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	1	2	2	92.449	83.718	2;3	0.00016545	45156	160513_QHF_FH_JSI12Kac_6	73.983	59.298			1.2198	1.2164	37.11	8	3	Median	0.96827	0.82984	54.806	3	2	Median	0.59421	0.70187	NaN	1	0	Median	1.4291	1.3298	19.407	2	0	Median	1.2348	1.3053	3.1774	2	1	Median	803250000	407270000	395980000	221130000	98907000	122220000	134760000	84754000	50009000	200630000	87635000	112990000	246720000	135970000	110750000	22695	2155	21487	141314;141315;141316;141317;141318;141319;141320;141321	191334;191335;191336;191337;191338;191339;191340;191341;191342;191343	191340		1797;1798;1799	10	
HNIMDFAMPYFIQVMK	1	3 Oxidation (M)	2031.9257	0.92566113	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	3	0				By MS/MS	16	0									1				1	79.193	69.751	3	0.0044669	36858	160513_QHF_FH_JSI12Kac_6	45.14	36.093			0.86359	0.93268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86359	0.93268	NaN	1	0	Median	23942000	11273000	12668000	0	0	0	0	0	0	0	0	0	23942000	11273000	12668000	22696	2155	21487	141322	191344	191344		1797;1798;1799	1	
HNIMDFAMPYFIQVMK	1	2 Oxidation (M)	2015.9307	0.93074651	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	2	0				By MS/MS	16	0									3				3	85.677	76.235	3	0.00019949	40064	160513_QHF_FH_JSI12Kac_6	70.197	54.313			1.7107	1.7813	24.161	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7107	1.7813	24.161	3	1	Median	159410000	61072000	98337000	0	0	0	0	0	0	0	0	0	159410000	61072000	98337000	22697	2155	21487	141323;141324;141325	191345;191346;191347;191348	191346		1797;1798;1799	4	
HNIQALLK	1	Unmodified	935.55525	0.55525025	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.58	3.77		6	5						1	2	3	2	5	30.889	29.445	2	0.00061433	25032	160511_QHF_FH_JSI11i_3	124.83	57.802			37.338	32.881	365.84	9	9	Median	1.4023	1.2234	465.45	2	2	Median	0.99664	1.1499	499.12	3	3	Median	45.026	42.468	NaN	1	1	Median	46.406	45.67	277.71	3	3	Median	1557800000	706320000	851520000	158870000	59419000	99447000	277350000	153330000	124010000	375010000	177160000	197840000	746620000	316400000	430220000	22698	977	21488	141326;141327;141328;141329;141330;141331;141332;141333;141334;141335;141336;141337	191349;191350;191351;191352;191353;191354;191355;191356;191357;191358;191359;191360;191361	191350			13	
HNIQFSSFDIFSDEEVR	0	Unmodified	2068.949	0.94903365	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.895	86.763	3	0.00010142	75497	160511_QHF_FH_JSI12i_3	65.175	62.505			1.2108	1.1627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2108	1.1627	NaN	1	0	Median	31031000	12624000	18407000	0	0	0	0	0	0	0	0	0	31031000	12624000	18407000	22699	595	21489	141338	191362	191362			1	
HNIVDETLK	1	Unmodified	1067.5611	0.56112349	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	32.199	31.298	2	0.0011234	26501	160511_QHF_FH_JSI11i_2	80.231	60.595			2.8693	3.0054	128.31	6	6	Median	2.8244	2.4868	NaN	1	1	Median	2.9148	3.6321	NaN	1	1	Median	1.5503	1.6311	168.26	2	2	Median	1.2407	1.3365	214.84	2	2	Median	150580000	63504000	87072000	15453000	3494800	11958000	19463000	5162400	14300000	76979000	33617000	43361000	38681000	21229000	17452000	22700	3668	21490	141339;141340;141341;141342;141343;141344	191363;191364;191365;191366;191367;191368	191367			6	
HNIVFGDYTWTEFDEPFLTR	0	Unmodified	2486.1543	0.1542754	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	92.566	84.559	3	2.9695E-26	45253	160513_QHF_FH_JSI12Kac_6	157.79	144.47			0.58904	0.6265	70.766	3	2	Median	2.3366	1.9944	NaN	1	1	Median	0.47342	0.55243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58904	0.6265	NaN	1	0	Median	183550000	86751000	96799000	50848000	11254000	39594000	50128000	37731000	12397000	0	0	0	82574000	37766000	44808000	22701	2692	21491	141345;141346;141347	191369;191370;191371;191372	191371			4	
HNKPEVEVR	1	Unmodified	1106.5833	0.58325592	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		7.9605	7.9605	2;3	0.0094993	5626	160511_QHF_FH_JSI11i_3	48.44	29.462			0.36174	0.34185	34.231	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36174	0.34185	34.231	2	2	Median	NaN	NaN	NaN	0	0	Median	170550000	118770000	51773000	0	0	0	0	0	0	170550000	118770000	51773000	0	0	0	22702	1905	21492	141348;141349	191373;191374	191374			2	
HNLEELEQVVYKPQK	2	Unmodified	1852.9683	0.96831253	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	56.484	56.237	3	1.4977E-05	48344	160511_QHF_FH_JSI12i_3	116.96	104.76			0.11102	0.11526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11102	0.11526	NaN	1	1	Median	116000000	93204000	22798000	0	0	0	0	0	0	0	0	0	116000000	93204000	22798000	22703	728	21493	141350	191375	191375			1	
HNLEIIK	1	Unmodified	865.50215	0.50215205	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.51		6	2						2	3	2	3	2	26.06	23.569	2	0.0061359	20583	160511_QHF_FH_JSI10i_2	93.374	36.093			4.8236	4.5214	242.25	8	8	Median	5.9116	4.7902	251.19	3	3	Median	0.070852	0.089183	NaN	1	1	Median	0.7355	0.72509	341.96	2	2	Median	8.1715	8.8966	103.89	2	2	Median	1409400000	753100000	656340000	313890000	134400000	179490000	511250000	274080000	237170000	390280000	324020000	66263000	194030000	20608000	173420000	22704	2094	21494	141351;141352;141353;141354;141355;141356;141357;141358;141359;141360	191376;191377;191378;191379;191380;191381;191382;191383;191384;191385	191384			10	
HNLEKQIATLHAQVADMK	2	Acetyl (K);Oxidation (M)	2104.0735	0.073522654	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		61.574	51.866	3	0.00033534	28082	160513_QHF_FH_JSI11Kac_6	77.221	67.641			0.26031	0.2481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26031	0.2481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9582900	8328900	1254000	0	0	0	0	0	0	9582900	8328900	1254000	0	0	0	22705	1436	21495	141361	191386	191386	1402	1099	1	
HNLEKQIATLHAQVADMK	2	Acetyl (K)	2088.0786	0.078608032	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.524	62.105	3	0.00017532	33611	160513_QHF_FH_JSI11Kac_6	110.33	94.933			0.13401	0.12745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13401	0.12745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51676000	49442000	2234800	0	0	0	0	0	0	51676000	49442000	2234800	0	0	0	22706	1436	21495	141362	191387	191387	1402		1	
HNLEKQIATLHAQVADMKK	3	Acetyl (K)	2216.1736	0.17357105	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			64.884	56.716	4	0.011225	31169	160513_QHF_FH_JSI10Kac_6	46.833	39.029			0.96007	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96007	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17541000	6712800	10828000	0	0	0	17541000	6712800	10828000	0	0	0	0	0	0	22707	1436	21496	141363	191388	191388	1402		1	
HNLGIFYFK	1	Unmodified	1137.5971	0.59711507	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	2	1	2	71.231	63.877	2	1.3518E-07	33783	160513_QHF_FH_JSI9Kac_6	141.47	101.42			0.24058	0.23405	232.66	7	7	Median	2.7467	2.3645	341.96	2	2	Median	1.1587	1.3862	359.82	2	2	Median	0.15669	0.15146	NaN	1	1	Median	0.28402	0.29095	30.778	2	2	Median	439340000	245190000	194150000	106030000	43625000	62403000	159610000	64168000	95446000	84621000	69217000	15404000	89074000	68181000	20893000	22708	4802	21497	141364;141365;141366;141367;141368;141369;141370	191389;191390;191391;191392;191393;191394;191395	191390			7	
HNLIQHAK	1	Unmodified	959.5301	0.53009814	2897	Q5JPI3	C3orf38	Uncharacterized protein C3orf38	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	11.59	4.1777	3	0.00080977	4516	160513_QHF_FH_JSI10Kac_6	73.26	57.057			0.71209	0.81201	26.361	5	1	Median	NaN	NaN	NaN	0	0	Median	0.5926	0.69769	21.459	2	1	Median	0.71209	0.71472	NaN	1	0	Median	0.98694	1.0908	2.0733	2	0	Median	37884000	21788000	16096000	0	0	0	23519000	13878000	9641100	3015600	1757900	1257700	11349000	6152200	5196800	22709	2897	21498	141371;141372;141373;141374;141375	191396;191397;191398;191399;191400	191399			3	
HNLKLGFMSAFVK	2	Acetyl (K)	1532.8174	0.81735495	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	86.023	76.581	3	0.0012943	40869	160513_QHF_FH_JSI12Kac_6	69.716	57.923			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6031000	0	6031000	0	0	0	0	0	0	0	0	0	6031000	0	6031000	22710	1465	21499	141376	191401	191401	1452		1	
HNLLLHLK	1	Unmodified	986.60253	0.6025348	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	2	4	1	3	38.475	36.273	3	0.00097432	31087	160511_QHF_FH_JSI10i_3	72.485	20.63			0.96617	1.1343	174.08	6	4	Median	6.1564	4.9836	329.73	2	1	Median	0.96617	1.1343	44.328	2	1	Median	0.65598	0.62033	NaN	1	1	Median	3.67	3.7861	NaN	1	1	Median	393990000	180440000	213550000	76853000	31614000	45239000	38932000	19813000	19119000	131860000	93718000	38145000	146340000	35295000	111040000	22711	2858	21500	141377;141378;141379;141380;141381;141382;141383;141384;141385;141386	191402;191403;191404;191405;191406;191407;191408;191409;191410;191411;191412;191413;191414	191405			13	
HNLLQACK	1	Unmodified	982.50183	0.50183448	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		14.7	14.47	2	0.0031291	11439	160511_QHF_FH_JSI11i_2	81.297	61.015			0.98221	0.99065	190.5	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98221	0.99065	190.5	2	2	Median	NaN	NaN	NaN	0	0	Median	53064000	31915000	21149000	0	0	0	0	0	0	53064000	31915000	21149000	0	0	0	22712	2560	21501	141387;141388	191415;191416	191415			2	
HNLMTVEQNNGSSQK	1	Unmodified	1685.7791	0.77913155	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			17.523	16.812	3	0.06088	14235	160511_QHF_FH_JSI10i_2	23.36	11.195			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11234000	11234000	0	0	0	0	11234000	11234000	0	0	0	0	0	0	0	22713	2432	21502	141389	191417	191417			1	
HNLSEVLLATMNILFTQFK	1	Unmodified	2218.182	0.18201047	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	102.95	95.1	2;3	8.797E-122	57373	160513_QHF_FH_JSI10Kac_6	294.39	269.83			3.7549	4.5067	168.01	5	5	Median	1.9723	1.6824	242.89	2	2	Median	1.1671	1.4007	165.26	2	2	Median	9.6877	9.4013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1075300000	423850000	651410000	800370000	327370000	473000000	189280000	90556000	98723000	85614000	5920900	79693000	0	0	0	22714	3503	21503	141390;141391;141392;141393;141394;141395	191418;191419;191420;191421;191422;191423	191422			6	
HNMCGETEEEK	1	Unmodified	1362.518	0.5180144	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	6.2774	5.8728	2	5.6595E-06	3762	160511_QHF_FH_JSI12i_2	114.83	110.9			0.95858	0.79346	97.442	7	7	Median	0.95858	0.79346	NaN	1	1	Median	1.075	1.3233	75.566	2	2	Median	1.0443	1.0631	185.6	2	2	Median	0.76222	0.83945	118.47	2	2	Median	353650000	151380000	202270000	25611000	7303400	18307000	61168000	31634000	29534000	142190000	57899000	84292000	124680000	54542000	70137000	22715	1188	21504	141396;141397;141398;141399;141400;141401;141402	191424;191425;191426;191427;191428;191429;191430	191424			7	
HNMDIGTWDNK	1	Unmodified	1329.5772	0.57718426	5654;4548	Q9BYJ9;Q9Y5A9	YTHDF1;YTHDF2	YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		36.318	35.626	2	0.00037574	31219	160511_QHF_FH_JSI10i_2	81.865	62.078			0.6801	0.73179	92.981	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32219	0.37918	NaN	1	1	Median	1.4356	1.4123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34464000	20068000	14396000	0	0	0	16395000	13274000	3120700	18069000	6793400	11275000	0	0	0	22716	4548;5654	21505	141403;141404;141405	191431;191432;191433	191433			3	
HNMNIGTWDEK	1	Unmodified	1343.5928	0.59283433	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	35.92	35.187	2	0.0017382	29630	160511_QHF_FH_JSI11i_2	66.056	52.936			0.49405	0.44921	27.402	2	2	Median	0.64598	0.54525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37785	0.37008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19966000	13839000	6127100	8862800	6220700	2642100	0	0	0	11103000	7618000	3485000	0	0	0	22717	3291	21506	141406;141407;141408;141409	191434;191435;191436;191437	191437			4	
HNNAKYAVSMAR	1	Acetyl (K)	1402.6776	0.67756701	1039	P13797	PLS3	Plastin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	33.646	24.747	2;3	3.6829E-12	13948	160513_QHF_FH_JSI11Kac_6	127.83	105.74			0.62	0.65849	67.377	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0195	1.1859	4.5125	2	0	Median	0.37627	0.36965	2.9668	2	0	Median	NaN	NaN	NaN	0	0	Median	101720000	69256000	32462000	0	0	0	31625000	15310000	16315000	67360000	51213000	16147000	2732000	2732000	0	22718	1039	21507	141410;141411;141412;141413;141414	191438;191439;191440;191441;191442;191443;191444	191439	868		7	
HNNLDLVIIR	0	Unmodified	1205.6881	0.68805534	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.3	6.6		2							4	1		1	4	64.242	56.319	2;3	0.00020843	48857	160511_QHF_FH_JSI12i_2	65.719	53.104			0.77961	0.76372	44.786	5	2	Median	0.9477	0.80895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77961	0.74181	NaN	1	0	Median	1.4449	1.5727	60.804	3	2	Plateau	110220000	57554000	52663000	21567000	11537000	10030000	0	0	0	27829000	14486000	13343000	60822000	31531000	29291000	22719	386	21508	141415;141416;141417;141418;141419;141420	191445;191446;191447;191448;191449;191450	191446			6	
HNNLYLVATSK	1	Unmodified	1258.667	0.66698555	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.45		7	5						3	3	1	6	5	35.442	32.955	2	3.2306E-07	18265	160513_QHF_FH_JSI11Kac_6	108.47	88.48			0.97815	1.0585	151.49	13	12	Median	0.81349	0.68391	55.767	3	3	Plateau	0.97815	1.1935	NaN	1	1	Median	0.62622	0.62303	185.67	4	4	Median	1.0559	1.1096	200.44	5	4	Median	483040000	267130000	215920000	90325000	46111000	44214000	54690000	25525000	29166000	203300000	120010000	83293000	134730000	75485000	59243000	22720	4524	21509	141421;141422;141423;141424;141425;141426;141427;141428;141429;141430;141431;141432;141433;141434;141435	191451;191452;191453;191454;191455;191456;191457;191458;191459;191460;191461;191462;191463;191464;191465	191456			15	
HNNNMMAK	1	Unmodified	958.4113	0.41130491	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.1177	4.9235	2	0.0061243	2707	160511_QHF_FH_JSI11i_2	72.138	59.15			2.9763	3.1296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9763	3.1296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37713000	9047000	28666000	0	0	0	0	0	0	37713000	9047000	28666000	0	0	0	22721	2911	21510	141436	191466	191466			1	
HNPTVTGHQEQTYLQK	1	Unmodified	1879.9177	0.91767394	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	20.483	20.484	3	5.3497E-08	16641	160511_QHF_FH_JSI12i_3	133.71	130.22			0.95104	0.91767	32.619	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78436	0.72865	NaN	1	0	Median	1.1531	1.1557	NaN	1	0	Median	142550000	68050000	74496000	0	0	0	0	0	0	53591000	33059000	20532000	88955000	34991000	53964000	22722	3206	21511	141437;141438;141439	191467;191468;191469;191470	191470			4	
HNPVFGVMS	0	Unmodified	986.46439	0.46438634	1939	P61158	ACTR3	Actin-related protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.629	46.647	2	0.0019812	40039	160511_QHF_FH_JSI11i_2	66.682	61.595			0.9333	0.96813	5.41	4	0	Median	1.1418	0.96295	NaN	1	0	Median	0.79976	0.97333	NaN	1	0	Median	0.92515	0.93187	NaN	1	0	Median	0.94152	1.0582	NaN	1	0	Median	616660000	320840000	295830000	93724000	47889000	45835000	139310000	80379000	58935000	234370000	114230000	120140000	149260000	78336000	70921000	22723	1939	21512	141440;141441;141442;141443	191471;191472;191473;191474;191475;191476;191477	191475			7	
HNQIITEETGSAVEPSDEIK	1	Unmodified	2196.0546	0.054620931	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		46.611	46.098	3	5.432E-06	40477	160511_QHF_FH_JSI10i_2	78.088	68.805			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16604000	16604000	0	0	0	0	0	0	0	16604000	16604000	0	0	0	0	22724	3000	21513	141444;141445	191478;191479	191479			2	
HNQLPLVIEFTEQTAPK	1	Unmodified	1964.0367	0.036726442	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.84	4.2		10	7						2	3	6	3	7	82.106	80.247	2;3	9.6193E-41	70774	160511_QHF_FH_JSI12i_2	197.88	180.81			1.1068	1.1432	34.353	16	5	Median	1.117	0.95875	23.542	3	0	Median	0.86348	1.0504	57.586	5	3	Median	1.1572	1.1136	1.5493	3	0	Plateau	1.1504	1.2294	21.934	5	2	Median	3672000000	1780300000	1891800000	584230000	305390000	278850000	921370000	551500000	369870000	1068800000	467970000	600870000	1097600000	455400000	642200000	22725	867	21514	141446;141447;141448;141449;141450;141451;141452;141453;141454;141455;141456;141457;141458;141459;141460;141461;141462;141463;141464	191480;191481;191482;191483;191484;191485;191486;191487;191488;191489;191490;191491;191492;191493;191494;191495;191496;191497;191498;191499;191500;191501;191502;191503;191504;191505;191506;191507;191508;191509;191510;191511;191512;191513;191514;191515;191516;191517;191518;191519;191520;191521;191522;191523;191524;191525;191526;191527;191528;191529;191530	191487			51	
HNSEKPPEPVKPEVK	3	Unmodified	1713.905	0.90498399	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		16.896	16.896	4	0.00075648	14042	160511_QHF_FH_JSI11i_3	68.173	57.319			0.33982	0.32558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33982	0.32558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55427000	38506000	16921000	0	0	0	0	0	0	55427000	38506000	16921000	0	0	0	22726	5296	21515	141465	191531	191531			1	
HNSSGSILFLGR	0	Unmodified	1286.6731	0.67313356	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	4	4	2	2	56.389	49.66	2;3	7.6405E-08	26358	160513_QHF_FH_JSI9Kac_6	126.19	107.88			1.2008	1.0536	25.898	12	4	Median	1.2609	1.0536	19.147	4	1	Median	1.1773	1.3493	31.617	4	2	Median	1.1127	1.0874	12.047	2	0	Median	0.79568	0.87011	22.89	2	1	Median	774470000	316390000	458070000	331950000	112190000	219760000	372530000	168430000	204100000	44231000	21147000	23084000	25761000	14627000	11134000	22727	1363	21516	141466;141467;141468;141469;141470;141471;141472;141473;141474;141475;141476;141477	191532;191533;191534;191535;191536;191537;191538;191539;191540;191541;191542	191539			11	
HNSVEDSVTK	1	Unmodified	1114.5255	0.52546627	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				9.2498	8.7337	2	0.034481	6606	160511_QHF_FH_JSI9i_2	47.187	35.418			0.41997	0.36102	NaN	1	0	Median	0.41997	0.36102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34242000	22563000	11679000	34242000	22563000	11679000	0	0	0	0	0	0	0	0	0	22728	428	21517	141478	191543	191543			1	
HNTAVSQLTK	1	Unmodified	1097.5829	0.58292157	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	4	2	11.831	11.614	2	9.0601E-06	9040	160511_QHF_FH_JSI11i_2	115.57	73.383			3.3256	2.9136	159.27	9	9	Median	3.3256	2.9136	NaN	1	1	Median	1.8789	2.3026	126.39	2	2	Median	1.1376	1.107	169.95	4	4	Median	1.4657	1.4793	293.31	2	2	Median	1251700000	527830000	723840000	98919000	22714000	76206000	259860000	116520000	143340000	575930000	234670000	341260000	316970000	153930000	163040000	22729	4989	21518	141479;141480;141481;141482;141483;141484;141485;141486;141487	191544;191545;191546;191547;191548;191549;191550;191551;191552;191553	191548			10	
HNTGTDFSNSSTK	1	Unmodified	1394.6062	0.60623578	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	7.8706	7.6735	2	0.00035777	5327	160511_QHF_FH_JSI12i_2	70.977	53.952			2.6682	2.6704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6682	2.6704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26980000	14219000	12761000	0	0	0	0	0	0	26980000	14219000	12761000	0	0	0	22730	4140	21519	141488;141489	191554;191555	191554			2	
HNTVIFILGK	1	Unmodified	1140.6655	0.66552898	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	68.478	59.626	2	4.2386E-09	31504	160513_QHF_FH_JSI9Kac_6	127.76	59.541			0.40585	0.39312	115.47	7	7	Median	0.93325	0.79841	148.8	2	2	Median	0.63688	0.75793	115.44	2	2	Median	1.3803	1.3378	173.19	2	2	Median	0.29091	0.30666	NaN	1	1	Median	460660000	245620000	215040000	113140000	56819000	56318000	155280000	104530000	50755000	153490000	57936000	95555000	38748000	26340000	12408000	22731	3477	21520	141490;141491;141492;141493;141494;141495;141496	191556;191557;191558;191559;191560;191561;191562	191558			7	
HNVEVLGILSDDVETDTVAPGENLK	1	Unmodified	2663.329	0.32900488	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							3	2	3	5	90.572	90.098	3	6.2262E-18	77929	160511_QHF_FH_JSI12i_3	133.27	125.73			0.98638	1.0151	34.581	12	9	Median	1.4326	1.2213	43.209	2	2	Median	0.74328	0.9138	28.164	2	2	Median	1.3276	1.3335	39.089	3	2	Median	0.84192	0.92407	40.333	5	3	Median	728990000	346660000	382330000	94962000	38141000	56821000	130860000	71309000	59553000	198170000	87988000	110190000	304990000	149220000	155770000	22732	1069	21521	141497;141498;141499;141500;141501;141502;141503;141504;141505;141506;141507;141508;141509	191563;191564;191565;191566;191567;191568;191569;191570;191571;191572;191573;191574;191575;191576;191577;191578;191579;191580;191581;191582;191583;191584;191585;191586	191586			24	
HNVIVGR	0	Unmodified	793.45587	0.45587056	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.8238	8.6267	2	0.020897	6188	160511_QHF_FH_JSI11i_2	60.39	39.405			3.1851	3.2296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1851	3.2296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85553000	33460000	52093000	0	0	0	0	0	0	85553000	33460000	52093000	0	0	0	22733	5479	21522	141510	191587	191587			1	
HNVMISTEWAAPNVLR	0	Unmodified	1836.9305	0.93048723	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	2	3	73.018	72.172	2;3	2.6166E-08	62259	160511_QHF_FH_JSI12i_3	134.98	110.63			0.92268	0.82104	20.372	6	4	Plateau	0.99367	0.82024	NaN	1	0	Median	0.66066	0.82184	NaN	1	0	Median	0.90726	0.90371	NaN	1	1	Median	0.74007	0.84759	25.176	3	3	Plateau	222620000	105590000	117030000	26156000	14028000	12128000	68331000	32724000	35608000	51879000	20932000	30947000	76259000	37908000	38351000	22734	2374	21523	141511;141512;141513;141514;141515;141516;141517	191588;191589;191590;191591;191592;191593;191594;191595;191596	191596			9	
HNVQTLDIISR	0	Unmodified	1294.6993	0.69934831	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	40.941	40.431	2	0.00068155	34744	160511_QHF_FH_JSI11i_2	82.494	65.954			1.1458	1.1517	115.61	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5763	2.5224	139.01	2	2	Median	0.74954	0.77885	83.463	2	2	Median	167370000	73631000	93735000	0	0	0	0	0	0	98688000	37985000	60702000	68678000	35646000	33032000	22735	2241	21524	141518;141519;141520;141521	191597;191598;191599;191600	191599			4	
HNYEGTLR	0	Unmodified	988.47264	0.47264284	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		9.641	9.2363	2	0.0017591	6751	160511_QHF_FH_JSI11i_2	85.212	49.332			1.0861	1.1123	27.776	3	0	Median	1.4072	1.1886	NaN	1	0	Median	0.57354	0.71316	NaN	1	0	Median	1.0861	1.1123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216420000	113910000	102510000	52956000	18017000	34939000	68428000	42580000	25848000	95033000	53313000	41721000	0	0	0	22736	3922	21525	141522;141523;141524	191601;191602;191603;191604;191605	191602			5	
HNYLPFIMELLK	1	Unmodified	1516.8112	0.81120694	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	102.18	102.13	3	8.3568E-06	88782	160511_QHF_FH_JSI12i_3	104.87	91.73			0.88199	1.0001	20.006	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88199	1.0382	NaN	1	0	Median	0.8028	0.72162	NaN	1	0	Median	0.97957	1.0001	NaN	1	0	Median	198230000	91251000	106980000	0	0	0	16204000	8627100	7577100	33861000	16906000	16955000	148170000	65718000	82448000	22737	5663	21526	141525;141526;141527	191606;191607;191608	191608			3	
HNYPDLVER	0	Unmodified	1141.5516	0.55162144	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		25.304	24.676	2	0.00059176	20516	160511_QHF_FH_JSI11i_2	82.287	60.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22738	5166	21527	141528;141529	191609;191610	191609			2	
HNYPWNK	1	Unmodified	957.4457	0.4456998	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.058	19.084	2	0.03714	15462	160511_QHF_FH_JSI12i_3	50.039	29.757			0.632	0.68754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.632	0.68754	NaN	1	1	Median	9193300	5436700	3756700	0	0	0	0	0	0	0	0	0	9193300	5436700	3756700	22739	3013	21528	141530	191611	191611			1	
HNYYFINYR	0	Unmodified	1288.5989	0.59890598	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	54.793	45.604	2	1.3605E-11	24770	160513_QHF_FH_JSI10Kac_6	159.04	118.69			1.0346	0.9923	14.434	6	1	Median	1.1799	1.0335	0.078129	2	0	Median	0.73761	0.86398	7.0907	2	1	Median	1.3066	1.2569	NaN	1	0	Median	0.91206	0.95324	NaN	1	0	Median	220100000	107280000	112830000	38315000	15278000	23037000	126270000	67725000	58542000	18754000	8008700	10745000	36766000	16265000	20501000	22740	1314	21529	141531;141532;141533;141534;141535;141536	191612;191613;191614;191615;191616;191617;191618;191619;191620;191621;191622	191620			11	
HPAKPDPSGECNPDLR	1	Unmodified	1788.8213	0.82133071	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	4	1	15.97	15.84	2;3	0.00040414	13840	160511_QHF_FH_JSI10i_2	42.813	35.755			1.0443	1.2763	71.895	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0443	1.2763	NaN	1	0	Median	0.55158	0.5099	56.012	3	2	Plateau	2.7816	2.7657	NaN	1	1	Median	340730000	178460000	162260000	0	0	0	44751000	19941000	24810000	262970000	153430000	109540000	33010000	5092600	27917000	22741	2741	21530	141537;141538;141539;141540;141541;141542	191623;191624;191625;191626;191627;191628;191629;191630;191631	191630			9	
HPDADSLYVEK	1	Unmodified	1272.5986	0.59863121	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	26.757	25.863	2	0.00037255	21526	160511_QHF_FH_JSI12i_2	73.067	67.585			1.018	1.0704	30.978	4	1	Median	1.5009	1.2759	NaN	1	1	Median	0.55689	0.69308	NaN	1	0	Median	1.3	1.3348	NaN	1	0	Median	0.79722	0.89796	NaN	1	0	Median	344930000	190830000	154110000	51939000	18178000	33761000	68227000	42611000	25616000	160260000	96547000	63711000	64511000	33492000	31019000	22742	1823	21531	141543;141544;141545;141546;141547	191632;191633;191634;191635;191636;191637;191638;191639	191632			8	
HPDASVNFSEFSK	1	Unmodified	1463.6681	0.66810776	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.42		11						8		4	4	7	4	51.127	45.877	2;3	1.2935E-16	39391	160511_QHF_FH_JSI11i_2	132.5	51.739			0.97035	0.97731	41.447	16	3	Median	1.1292	0.97731	12.208	4	1	Median	0.81871	0.99035	23.811	4	0	Linear	0.98473	1.005	62.622	4	1	Median	0.98679	1.0961	43.369	4	1	Median	1856400000	955290000	901150000	296340000	132110000	164230000	440750000	245380000	195370000	623130000	329630000	293500000	496220000	248170000	248050000	22743	928	21532	141548;141549;141550;141551;141552;141553;141554;141555;141556;141557;141558;141559;141560;141561;141562;141563;141564;141565;141566	191640;191641;191642;191643;191644;191645;191646;191647;191648;191649;191650;191651;191652;191653;191654;191655;191656;191657;191658;191659;191660;191661;191662;191663;191664;191665;191666;191667;191668;191669;191670;191671;191672;191673;191674;191675;191676;191677;191678;191679;191680;191681	191666			42	
HPDSHQLFIGNLPHEVDK	1	Unmodified	2082.0283	0.028287021	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	54.181	53.943	3;4	0.00020207	46515	160511_QHF_FH_JSI12i_3	64.723	55.439			1.9333	1.9073	7.6297	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9333	1.9073	7.6297	2	2	Median	133790000	57107000	76681000	0	0	0	0	0	0	0	0	0	133790000	57107000	76681000	22744	2381	21533	141567;141568	191682;191683;191684	191684			3	
HPDSSVNFAEFSK	1	Unmodified	1463.6681	0.66810776	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	44.869	43.896	2;3	2.6508E-05	37739	160511_QHF_FH_JSI11i_2	119.39	54.948			1.0596	1.1809	32.224	5	1	Median	2.1955	1.8298	NaN	1	1	Median	1.2782	1.5919	42.228	2	0	Median	1.0168	1.0246	NaN	1	0	Median	1.0596	1.1611	NaN	1	0	Median	419740000	196650000	223100000	63176000	26795000	36381000	171070000	75134000	95937000	122830000	64441000	58386000	62668000	30276000	32392000	22745	1280	21534	141569;141570;141571;141572;141573	191685;191686;191687;191688;191689;191690;191691;191692;191693;191694	191690			10	
HPDVEVDGFSELR	0	Unmodified	1498.7052	0.70522155	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		6								1		3	2	54.044	53.152	2;3	0.00052343	45519	160511_QHF_FH_JSI12i_2	43.813	33.154			1.0344	1.0634	13.975	6	1	Median	1.2664	1.0681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.096	1.0921	20.33	3	1	Median	0.91923	1.0384	2.7352	2	0	Median	308080000	141300000	166780000	39945000	17982000	21962000	0	0	0	183330000	82214000	101120000	84803000	41103000	43700000	22746	939	21535	141574;141575;141576;141577;141578;141579	191695;191696;191697;191698;191699;191700;191701	191695			6	
HPDYAILAAR	0	Unmodified	1125.5931	0.59309232	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	2	2	2	2	39.932	35.476	2	0.00025459	31102	160511_QHF_FH_JSI10i_2	80.219	64.78			0.88318	0.90418	16.743	7	1	Median	1.1397	0.98737	15.472	2	0	Median	0.73772	0.88503	15.201	2	0	Median	0.99889	0.99862	14.05	2	0	Median	0.63373	0.69925	NaN	1	1	Median	1373800000	704610000	669150000	278490000	124070000	154420000	387620000	215430000	172190000	487370000	249440000	237930000	220280000	115670000	104600000	22747	1242	21536	141580;141581;141582;141583;141584;141585;141586;141587	191702;191703;191704;191705;191706;191707;191708;191709;191710;191711	191708			10	
HPEAEMAQNSVR	0	Unmodified	1367.6252	0.62519709	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	12.258	11.832	2	0.00031196	9181	160511_QHF_FH_JSI11i_2	90.685	40.332			0.31118	0.33308	107.9	4	4	Median	NaN	NaN	NaN	0	0	Median	0.24246	0.29995	NaN	1	1	Median	0.86367	0.88058	158.93	2	2	Median	0.34152	0.36987	NaN	1	1	Median	352260000	222260000	130000000	0	0	0	66822000	52930000	13892000	204390000	117710000	86682000	81043000	51620000	29423000	22748	1065	21537	141588;141589;141590;141591	191712;191713;191714;191715	191714			4	
HPEELSLLK	1	Unmodified	1064.5866	0.58660996	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	40.535	39.576	2;3	0.014322	34395	160511_QHF_FH_JSI9i_2	36.424	20.222			0.19476	0.22212	169.84	3	3	Median	2.8804	2.482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.099613	0.093695	NaN	1	1	Median	0.19476	0.22212	NaN	1	1	Median	69984000	38756000	31228000	43323000	15707000	27616000	0	0	0	16630000	14849000	1780500	10031000	8199300	1831400	22749	3965	21538	141592;141593;141594;141595	191716;191717;191718;191719	191718			4	
HPELADK	1	Unmodified	808.40792	0.40791731	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	6.2495	5.8748	2	0.023109	3836	160511_QHF_FH_JSI10i_2	58.917	14.225			2.6303	3.0331	116.6	6	6	Median	5.1572	4.3048	NaN	1	1	Median	0.87511	1.0627	139.58	2	2	Median	1.1081	1.1242	167.29	2	2	Median	2.9298	3.2265	NaN	1	1	Median	9016900000	4979700000	4037100000	1039100000	362740000	676390000	2266000000	1424600000	841400000	4265800000	2527500000	1738300000	1446000000	664900000	781070000	22750	1595	21539	141596;141597;141598;141599;141600;141601	191720;191721;191722;191723;191724;191725;191726	191725			7	
HPELFEALGIAQPK	1	Unmodified	1548.83	0.83002813	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		7								1	3	3		75.98	75.28	2;3	0.00019756	65842	160511_QHF_FH_JSI11i_2	84.892	80.721			0.58367	0.58752	133.9	7	6	Median	0.3486	0.29651	NaN	1	0	Median	1.4215	1.7636	167.31	3	3	Median	0.58367	0.58752	93.906	3	3	Median	NaN	NaN	NaN	0	0	Median	239010000	115470000	123530000	23442000	17103000	6339000	78593000	28446000	50147000	136970000	69924000	67048000	0	0	0	22751	1984	21540	141602;141603;141604;141605;141606;141607;141608	191727;191728;191729;191730;191731;191732;191733;191734	191729			7	
HPELNISEEGITK	1	Unmodified	1465.7413	0.7412727	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.509	41.581	2	0.0017902	35654	160511_QHF_FH_JSI11i_2	73.781	54.687			1.5342	1.6184	47.371	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1602	1.1577	NaN	1	0	Median	2.0287	2.2623	NaN	1	1	Median	93174000	34517000	58657000	0	0	0	0	0	0	56602000	23372000	33229000	36572000	11145000	25427000	22752	1117	21541	141609;141610	191735;191736	191736			2	
HPENYDLATLK	1	Unmodified	1299.6459	0.64591575	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	36.168	35.244	2	0.00020994	31080	160511_QHF_FH_JSI10i_2	91.549	75.668			0.5605	0.57815	109.22	6	5	Median	0.8785	0.77398	NaN	1	0	Median	0.35761	0.43187	NaN	1	1	Median	0.64528	0.64344	129.84	2	2	Median	1.0203	1.129	189.52	2	2	Median	741980000	438010000	303970000	102740000	53324000	49412000	120380000	83509000	36871000	315240000	186620000	128620000	203620000	114560000	89067000	22753	2087	21542	141611;141612;141613;141614;141615;141616	191737;191738;191739;191740;191741;191742;191743	191743			7	
HPEQIFPR	0	Unmodified	1022.5298	0.52976379	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			24.43	23.542	2	0.028421	20379	160511_QHF_FH_JSI10i_2	50.632	30.35			1.6158	1.9733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6158	1.9733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23398000	9101500	14296000	0	0	0	23398000	9101500	14296000	0	0	0	0	0	0	22754	2115	21543	141617	191744	191744			1	
HPESEWPFLIITDLFLK	1	Unmodified	2084.0983	0.098264067	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.58	93.71	2;3	3.1937E-23	55829	160513_QHF_FH_JSI10Kac_6	203.82	173.09			1.2205	1.4745	59.638	3	3	Median	2.8353	2.3768	NaN	1	1	Median	0.86371	1.035	50.055	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	511850000	210810000	301040000	174940000	43024000	131910000	336910000	167780000	169130000	0	0	0	0	0	0	22755	5227	21544	141618;141619;141620	191745;191746;191747	191747			3	
HPESFIR	0	Unmodified	884.45045	0.45045083	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			57.842	56.956	2	0.017404	50321	160511_QHF_FH_JSI10i_2	62.715	6.689			7.7718	9.6904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7.7718	9.6904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40419000	7047000	33372000	0	0	0	40419000	7047000	33372000	0	0	0	0	0	0	22756	3586	21545	141621	191748	191748			1	
HPESNTAGMDIFAK	1	Unmodified	1516.698	0.69802768	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	43.882	42.923	2;3	0.0030491	37033	160511_QHF_FH_JSI11i_2	66.595	59.215			1.4118	1.4854	44.13	6	3	Median	3.4986	3.0189	NaN	1	0	Median	1.6177	1.9496	NaN	1	0	Median	1.2409	1.2431	40.86	2	2	Median	1.0517	1.1532	20.137	2	1	Median	357210000	140830000	216390000	37200000	7115500	30085000	52453000	20875000	31578000	118080000	52397000	65683000	149480000	60439000	89042000	22757	5711	21546	141622;141623;141624;141625;141626;141627	191749;191750;191751;191752;191753;191754	191753			6	
HPEVDVLINFASLR	0	Unmodified	1608.8624	0.86239089	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	90.124	89.488	3	0.00017838	77309	160511_QHF_FH_JSI12i_2	68.83	54.144			0.86695	0.86075	27.527	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0981	1.3626	NaN	1	0	Median	0.86695	0.86075	NaN	1	0	Median	0.77786	0.83273	NaN	1	0	Median	69500000	38019000	31481000	0	0	0	14304000	6536800	7767500	29185000	17187000	11998000	26011000	14295000	11716000	22758	1798	21547	141628;141629;141630	191755;191756;191757;191758;191759;191760	191756			6	
HPFIVDLIYAFQTGGK	1	Unmodified	1804.9512	0.9512059	1229	P23443	RPS6KB1	Ribosomal protein S6 kinase beta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	97.021	87.716	3	3.7117E-24	50123	160513_QHF_FH_JSI9Kac_6	153.7	133.86			1.0019	0.94417	42.396	3	1	Median	2.3081	1.9556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0019	0.94417	NaN	1	1	Median	0.86983	0.93267	NaN	1	0	Median	298790000	130100000	168700000	125010000	32517000	92494000	0	0	0	79604000	48338000	31266000	94179000	49240000	44939000	22759	1229	21548	141631;141632;141633	191761;191762;191763	191762			3	
HPFIVNHPK	1	Unmodified	1087.5927	0.59269839	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	13.689	13.763	3	8.3267E-05	10777	160511_QHF_FH_JSI12i_3	67.494	55.253			1.0492	1.0658	200.15	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0492	1.0658	200.15	2	1	Median	147650000	82136000	65512000	0	0	0	0	0	0	0	0	0	147650000	82136000	65512000	22760	1857	21549	141634;141635;141636	191764;191765;191766	191765			3	
HPFLVNLFACFQTK	1	Unmodified	1720.8759	0.87593247	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			89.794	84.074	2	0.00019961	47742	160513_QHF_FH_JSI10Kac_6	132.03	115.65			0.71816	0.84807	78.339	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71816	0.84807	78.339	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107860000	79348000	28514000	0	0	0	107860000	79348000	28514000	0	0	0	0	0	0	22761	2732	21550	141637;141638	191767;191768	191768			2	
HPFPGPGLAIR	0	Unmodified	1160.6455	0.64546224	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							1	3			48.856	47.278	2;3	0.00032883	38698	160511_QHF_FH_JSI9i_3	75.109	58.906			0.79018	0.76347	52.03	4	3	Median	1.0561	0.84778	NaN	1	0	Median	0.41944	0.49164	63.709	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	574710000	354490000	220220000	229420000	135160000	94259000	345290000	219330000	125970000	0	0	0	0	0	0	22762	1693	21551	141639;141640;141641;141642	191769;191770;191771;191772;191773	191773			5	
HPFSFPLENQAR	0	Unmodified	1441.7102	0.71024735	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	4	2	52.636	52.362	2;3	6.4862E-06	44787	160511_QHF_FH_JSI12i_3	79.889	75.088			1.1121	1.0742	26.638	7	2	Median	NaN	NaN	NaN	0	0	Median	0.89307	1.0742	NaN	1	0	Median	1.0218	0.96483	36.276	4	2	Median	1.2112	1.2227	6.0966	2	0	Median	667020000	305110000	361910000	0	0	0	56627000	29552000	27074000	394940000	175030000	219910000	215450000	100530000	114920000	22763	4361	21552	141643;141644;141645;141646;141647;141648;141649	191774;191775;191776;191777;191778;191779;191780;191781;191782;191783	191781			10	
HPFSKFGTGNK	2	Acetyl (K)	1260.6251	0.62512073	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.357	28.843	3	0.059168	15995	160513_QHF_FH_JSI11Kac_6	31.348	18.34			0.071053	0.069378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.071053	0.069378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5889000	5723400	165590	0	0	0	0	0	0	5889000	5723400	165590	0	0	0	22764	1060	21553	141650	191784	191784			1	
HPGIYLFLVHPNEMVR	0	Oxidation (M)	1936.9982	0.99817287	3254	Q7Z333	SETX	Probable helicase senataxin	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				76.074	67.471	3	0.022995	36198	160513_QHF_FH_JSI9Kac_6	39.517	23.925			1.6303	1.4022	NaN	1	1	Median	1.6303	1.4022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23388000	7339900	16048000	23388000	7339900	16048000	0	0	0	0	0	0	0	0	0	22765	3254	21554	141651	191785	191785			1	
HPGIYLFLVHPNEMVR	0	Unmodified	1921.0033	0.0032582445	3254	Q7Z333	SETX	Probable helicase senataxin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.441	73.8	3	5.6502E-08	40341	160513_QHF_FH_JSI10Kac_6	115.8	101.11			0.74078	0.88997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74078	0.88997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	264180000	137910000	126260000	0	0	0	264180000	137910000	126260000	0	0	0	0	0	0	22766	3254	21554	141652	191786;191787	191787			2	
HPGSFDVVHVK	1	Unmodified	1220.6302	0.63020611	2013;1204	P62701;P22090	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.43		11	7						9	7	7	7	6	33.652	30.179	2;3	3.1268E-10	16373	160513_QHF_FH_JSI9Kac_6	110.66	98.085			0.8294	0.86954	79.637	24	14	Median	0.77303	0.67125	51.522	5	4	Median	0.84056	1.0178	50.28	6	4	Median	0.8459	0.79576	52.304	7	5	Median	0.77847	0.83563	143.12	6	1	Median	5375100000	2731400000	2643700000	730600000	370930000	359660000	1218600000	652680000	565910000	1854300000	948170000	906130000	1571600000	759640000	811960000	22767	2013;1204	21555	141653;141654;141655;141656;141657;141658;141659;141660;141661;141662;141663;141664;141665;141666;141667;141668;141669;141670;141671;141672;141673;141674;141675;141676;141677;141678;141679	191788;191789;191790;191791;191792;191793;191794;191795;191796;191797;191798;191799;191800;191801;191802;191803;191804;191805;191806;191807;191808;191809;191810;191811;191812;191813;191814;191815;191816;191817;191818;191819;191820	191810			33	
HPHDIIDDINSGAVECPAS	0	Unmodified	2045.9113	0.91126793	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	60.511	59.711	2	2.6255E-09	51925	160511_QHF_FH_JSI11i_2	121.04	115.01			0.86658	1.0014	10.893	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78663	0.99848	NaN	1	0	Median	0.93043	0.94337	17.893	2	0	Median	0.91945	1.0044	NaN	1	0	Median	83607000	41576000	42032000	0	0	0	13732000	5613400	8118400	51380000	27041000	24339000	18495000	8920900	9574300	22768	1340	21556	141680;141681;141682;141683;141684	191821;191822;191823;191824;191825;191826	191825			6	
HPIGVLLNAITELQK	1	Unmodified	1644.9563	0.95629128	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		101.52	101.38	2;3	3.7238E-08	82258	160511_QHF_FH_JSI9i_3	94.728	74.621			1.0677	1.0259	33.07	5	3	Median	0.89194	0.72418	3.6523	2	1	Median	1.1795	1.3824	13.249	2	1	Median	1.0677	1.0259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	679830000	327680000	352140000	180010000	88399000	91614000	265320000	120070000	145250000	234490000	119210000	115280000	0	0	0	22769	5556	21557	141685;141686;141687;141688;141689;141690	191827;191828;191829;191830;191831	191831			5	
HPLFPLLALLFEK	1	Unmodified	1536.9068	0.90682189	1859	P55347	PKNOX1	Homeobox protein PKNOX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	99.503	91.664	2;3	1.0577E-12	49773	160513_QHF_FH_JSI12Kac_6	119.76	98.206			0.87792	0.91605	5.4599	5	0	Median	1.0704	0.92215	3.4077	2	0	Median	0.7489	0.88408	9.391	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87792	0.91605	NaN	1	0	Median	459240000	247410000	211830000	126010000	61342000	64663000	298170000	164040000	134130000	0	0	0	35057000	22023000	13033000	22770	1859	21558	141691;141692;141693;141694;141695	191832;191833;191834;191835;191836;191837;191838;191839;191840	191836			9	
HPLKWLPVQESSTDDK	2	Acetyl (K)	1920.9581	0.95814177	5715	Q9Y6A9	SPCS1	Signal peptidase complex subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.266	61.802	3	0.00066101	33476	160513_QHF_FH_JSI11Kac_6	76.151	64.889			0.16678	0.15871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16678	0.15871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9673600	8939100	734560	0	0	0	0	0	0	9673600	8939100	734560	0	0	0	22771	5715	21559	141696	191841	191841	3537		1	
HPLLVGHMPVMVAK	1	Unmodified	1527.8418	0.84179557	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	57.013	56.765	3	0.0017108	47493	160511_QHF_FH_JSI9i_3	52.495	40.703			0.88761	0.93013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88761	0.93013	NaN	1	1	Median	48861000	27221000	21639000	0	0	0	0	0	0	0	0	0	48861000	27221000	21639000	22772	233	21560	141697;141698	191842;191843	191842			2	
HPLPPPPPGEGPGAELPLFR	0	Unmodified	2074.1	0.099995401	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			77.732	77.001	3	0.00029075	68447	160511_QHF_FH_JSI10i_2	44.788	35.856			0.82221	0.96941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82221	0.96941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17700000	11768000	5932600	0	0	0	17700000	11768000	5932600	0	0	0	0	0	0	22773	3407	21561	141699	191844	191844			1	
HPNIVSLQDVLMQDSR	0	Unmodified	1850.9309	0.93088116	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		77.79	77.157	3	1.4271E-07	68414	160511_QHF_FH_JSI10i_2	78.228	66.46			0.79054	0.82751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79054	0.82751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37474000	22767000	14707000	0	0	0	0	0	0	37474000	22767000	14707000	0	0	0	22774	850	21562	141700;141701	191845;191846	191846			2	
HPNLVHK	1	Unmodified	843.47152	0.47152062	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.4371	5.5326	3	0.0050649	3103	160511_QHF_FH_JSI12i_3	58.981	35.962			1.6878	1.7319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6878	1.7319	NaN	1	1	Median	268610000	105810000	162800000	0	0	0	0	0	0	0	0	0	268610000	105810000	162800000	22775	1435	21563	141702	191847	191847			1	
HPPAEPSR	0	Unmodified	889.44061	0.44061443	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3			2	2	3	5.6172	1.3179	2	0.0048164	2923	160511_QHF_FH_JSI11i_2	75.109	43.82			0.6618	0.78142	111.96	7	3	Median	NaN	NaN	NaN	0	0	Median	0.4663	0.5658	45.663	2	1	Median	0.45462	0.45443	82.035	2	1	Median	1.1653	1.2412	174.14	3	1	Median	762430000	524290000	238140000	0	0	0	171680000	120840000	50840000	279330000	226580000	52756000	311410000	176870000	134540000	22776	3593	21564	141703;141704;141705;141706;141707;141708;141709	191848;191849;191850;191851;191852	191850			5	
HPPAPAEPSSDLASK	1	Unmodified	1502.7365	0.73652168	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	23.776	22.74	2;3	0.0024111	19625	160511_QHF_FH_JSI10i_2	56.599	43.973			2.0645	2.4999	44.302	3	3	Median	1.392	1.2003	NaN	1	1	Median	2.0645	2.4999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4005	2.6635	NaN	1	1	Median	207220000	69861000	137360000	79581000	26335000	53246000	43238000	13599000	29639000	0	0	0	84399000	29927000	54472000	22777	5213	21565	141710;141711;141712;141713	191853;191854;191855;191856;191857	191856			5	
HPPFSPPEPPLSSPASQHK	1	Unmodified	2036.0116	0.011574324	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		46.24	46.24	3	0.0032052	40820	160511_QHF_FH_JSI11i_3	46.877	40.395			1.2271	1.155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2271	1.155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37701000	13324000	24376000	0	0	0	0	0	0	37701000	13324000	24376000	0	0	0	22778	3024	21566	141714	191858	191858			1	
HPQGTEVK	1	Unmodified	894.45593	0.45593014	3427	Q8IWT0	ZBTB8OS	Protein archease	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			2.2863	1.9182	2	0.057914	1038	160511_QHF_FH_JSI10i_2	44.447	25.716			0.32753	0.40251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32753	0.40251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9167900	7221600	1946300	0	0	0	9167900	7221600	1946300	0	0	0	0	0	0	22779	3427	21567	141715	191859	191859			1	
HPQPFLR	0	Unmodified	893.48717	0.48717069	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	2	1	1	17.069	16.408	2;3	0.0029328	13497	160511_QHF_FH_JSI10i_3	64.776	40.804			2.4629	2.152	160.85	6	4	Median	5.3495	4.3781	36.959	2	2	Median	1.9232	2.2698	126.73	2	1	Median	1.4471	1.3737	NaN	1	1	Median	0.078901	0.080594	NaN	1	0	Median	677790000	272110000	405680000	267890000	64685000	203200000	132410000	58498000	73913000	208620000	86095000	122530000	68872000	62834000	6038000	22780	878	21568	141716;141717;141718;141719;141720;141721	191860;191861;191862;191863;191864;191865;191866	191862			7	
HPSSPCSVKHSPTR	1	Acetyl (K)	1617.7682	0.76817293	717	O95696	BRD1	Bromodomain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		16.244	8.2127	3	0.0021074	6142	160513_QHF_FH_JSI10Kac_6	54.598	48.121			0.85999	0.93509	39.471	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0377	1.2361	NaN	1	0	Median	0.71269	0.70736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11827000	6836900	4990400	0	0	0	8230100	4934500	3295600	3597200	1902400	1694800	0	0	0	22781	717	21569	141722;141723	191867;191868	191868	353		2	
HPSWMAAYHMNTIYLQEMMHSNQ	0	Unmodified	2819.2077	0.20766642	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		83.175	75.895	3;4	1.1934E-89	42562	160513_QHF_FH_JSI10Kac_6	218.69	206.73			1.0926	1.0869	23.723	4	1	Median	1.3148	1.1241	NaN	1	0	Median	0.86332	1.0108	5.5152	2	0	Median	1.692	1.6578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	308880000	142750000	166130000	61930000	28244000	33686000	205130000	104560000	100560000	41825000	9943900	31881000	0	0	0	22782	5301	21570	141724;141725;141726;141727	191869;191870;191871;191872;191873	191873			5	
HPTGPFFPVLSK	1	Unmodified	1325.7132	0.71320746	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.636	62.355	2	0.0024432	53779	160511_QHF_FH_JSI12i_3	59.367	38.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22783	5368	21571	141728	191874	191874			1	
HPTLLQDPDLR	0	Unmodified	1303.6884	0.68844927	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		41.435	40.719	2	0.0044164	34888	160511_QHF_FH_JSI11i_2	64.82	38.306			0.63683	0.69078	4.594	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59515	0.71359	NaN	1	1	Median	0.68143	0.6687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114440000	68464000	45973000	0	0	0	49442000	31143000	18300000	64995000	37321000	27673000	0	0	0	22784	444	21572	141729;141730	191875;191876	191875			2	
HPTPTMLSIQK	1	Unmodified	1251.6645	0.66454271	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.446	35.318	2	0.043073	29982	160511_QHF_FH_JSI12i_3	44.863	33.016			0.21136	0.21891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21136	0.21891	NaN	1	1	Median	25058000	20720000	4338500	0	0	0	0	0	0	0	0	0	25058000	20720000	4338500	22785	203	21573	141731	191877	191877			1	
HPTTGQILGYK	1	Unmodified	1213.6455	0.64552182	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	27.429	27.429	2	0.0018396	23006	160511_QHF_FH_JSI12i_3	65.305	55.073			0.7394	0.68612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7394	0.68612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15847000	11330000	4517400	0	0	0	0	0	0	15847000	11330000	4517400	0	0	0	22786	2677	21574	141732;141733;141734	191878;191879;191880	191880			3	
HPTTPSSTAK	1	Unmodified	1025.5142	0.5141733	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.8363	4.6422	2	0.0051791	2390	160511_QHF_FH_JSI11i_2	56.432	42.76			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22787	457	21575	141735	191881	191881			1	
HPTVLFVYGGPQVQLVNNSFK	1	Unmodified	2343.2376	0.23755152	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.879	89.879	3	0.00040981	80199	160511_QHF_FH_JSI11i_3	50.226	42.272			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22788	3308	21576	141736	191882	191882			1	
HPVCLLVLGMAGSGK	1	Unmodified	1537.8109	0.81088937	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		76.083	70.704	3	0.009388	61089	160511_QHF_FH_JSI10i_3	45.864	33.237			0.42246	0.45955	46.694	2	2	Median	NaN	NaN	NaN	0	0	Median	0.27205	0.33032	NaN	1	1	Median	0.65603	0.63932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29462000	20151000	9311300	0	0	0	5990400	4937000	1053400	23471000	15214000	8258000	0	0	0	22789	4861	21577	141737;141738	191883;191884	191883			2	
HPVLLLHPLGGWTK	1	Unmodified	1566.9035	0.90346785	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.45			14						11	4	8	4	9	72.202	68.301	2;3;4	1.7394E-05	60142	160511_QHF_FH_JSI12i_3	115.78	113.81			0.75356	0.72724	109.79	20	14	Median	0.88886	0.73726	56.62	4	3	Median	0.8358	0.966	165.52	6	4	Median	0.75356	0.71152	4.7539	2	0	Median	0.87031	0.94073	96.931	8	7	Median	4054200000	1988500000	2065700000	1059200000	564510000	494710000	1325600000	613190000	712370000	691160000	334280000	356880000	978280000	476550000	501720000	22790	678	21578	141739;141740;141741;141742;141743;141744;141745;141746;141747;141748;141749;141750;141751;141752;141753;141754;141755;141756;141757;141758;141759;141760;141761;141762;141763	191885;191886;191887;191888;191889;191890;191891;191892;191893;191894;191895;191896;191897;191898;191899;191900;191901;191902;191903;191904;191905;191906;191907;191908;191909;191910;191911;191912;191913;191914;191915;191916;191917;191918;191919;191920;191921;191922;191923;191924;191925;191926;191927;191928;191929;191930;191931	191912			47	
HPVSEYK	1	Unmodified	858.42357	0.42356738	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	5.8135	5.4107	2	0.04193	3237	160511_QHF_FH_JSI11i_2	46.426	29.499			1.0268	1.0279	46.94	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.88073	1.0598	NaN	1	0	Median	1.0268	1.0279	NaN	1	0	Median	2.097	2.3523	NaN	1	1	Median	547770000	302840000	244940000	0	0	0	155870000	88671000	67196000	243670000	155960000	87710000	148230000	58201000	90029000	22791	3593	21579	141764;141765;141766	191932;191933	191933			2	
HPVSLEQYLMEGSYNK	1	Unmodified	1893.8931	0.89309867	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								3	4	3	2	71.217	70.374	2;3	3.3517E-07	60809	160511_QHF_FH_JSI12i_2	120.21	115.86			0.96353	0.88764	52.62	12	12	Median	1.016	0.87015	65.862	3	3	Median	0.92113	1.1315	66.808	4	4	Median	0.91375	0.90549	41.777	3	3	Median	0.89131	0.98656	64.72	2	2	Median	1065700000	530820000	534900000	251610000	115870000	135740000	325060000	159070000	165990000	295670000	165890000	129780000	193380000	89979000	103400000	22792	1627	21580	141767;141768;141769;141770;141771;141772;141773;141774;141775;141776;141777;141778	191934;191935;191936;191937;191938;191939;191940;191941;191942;191943;191944;191945	191934			12	
HPVTGQFLYQDSNWASK	1	Unmodified	1976.9381	0.93807503	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	56.818	56.695	2	2.5072E-10	48698	160511_QHF_FH_JSI12i_3	162.37	134.71			1.0417	0.99948	90.439	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0417	0.99948	93.265	2	2	Median	0.86462	0.89249	125.34	2	2	Median	803870000	439540000	364330000	0	0	0	0	0	0	341270000	152400000	188870000	462600000	287140000	175460000	22793	793	21581	141779;141780;141781;141782	191946;191947;191948;191949;191950;191951	191951			6	
HPVTGQFLYQDSNWASKVEK	2	Acetyl (K)	2375.1546	0.15460975	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.481	68.163	3	6.2849E-10	37239	160513_QHF_FH_JSI11Kac_6	113.36	97.853			0.449	0.42612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.449	0.42612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51920000	40594000	11326000	0	0	0	0	0	0	51920000	40594000	11326000	0	0	0	22794	793	21582	141783	191952	191952	421		1	
HPWDDISYVLPEHMSM	0	Unmodified	1955.8546	0.85460468	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	3	1	92.966	92.514	2;3	0.00036495	81805	160511_QHF_FH_JSI10i_2	56.482	49.531			1.1177	1.1767	18.984	6	1	Median	1.4598	1.2499	NaN	1	1	Median	1.0702	1.3204	33.057	2	0	Median	1.0256	1.0465	11.567	2	0	Median	1.1099	1.2192	NaN	1	0	Median	238340000	98515000	139830000	20440000	6386800	14054000	83032000	37575000	45457000	97837000	37297000	60539000	37034000	17256000	19779000	22795	1798	21583	141784;141785;141786;141787;141788;141789;141790;141791	191953;191954;191955;191956;191957;191958;191959;191960;191961	191959			8	
HPWIAGDTALNK	1	Unmodified	1321.6779	0.67788459	3392	Q8IU85	CAMK1D	Calcium/calmodulin-dependent protein kinase type 1D	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		40.729	39.762	2	0.0068546	34030	160511_QHF_FH_JSI11i_2	51.927	37.26			0.62973	0.80866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62973	0.80866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12532000	9996800	2535500	0	0	0	12532000	9996800	2535500	0	0	0	0	0	0	22796	3392	21584	141792;141793	191962;191963	191962			2	
HPWIVHWDQLPQYQLNR	0	Unmodified	2229.1232	0.12319046	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.063	73.315	4	0.0077387	40074	160513_QHF_FH_JSI10Kac_6	37.913	29.204			0.82367	0.94482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82367	0.94482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58856000	29230000	29626000	0	0	0	58856000	29230000	29626000	0	0	0	0	0	0	22797	1755	21585	141794	191964	191964			1	
HPYFYAPELLYYANK	1	Unmodified	1887.9196	0.91957142	50	CON__P02769			yes	yes	0	0	0	0				By MS/MS	16	0									1				1	83.761	74.319	3	0.0004573	39582	160513_QHF_FH_JSI12Kac_6	76.588	60.646		+	0.1929	0.20851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1929	0.20851	NaN	1	1	Median	17411000	14162000	3248800	0	0	0	0	0	0	0	0	0	17411000	14162000	3248800	22798	50	21586	141795	191965	191965			1	
HQACLLLQK	1	Unmodified	1109.6015	0.60154852	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	3	1	26.59	26.006	2	1.1347E-05	21657	160511_QHF_FH_JSI11i_2	126.67	91.86			2.9712	3.2662	97.774	4	4	Median	NaN	NaN	NaN	0	0	Median	4.8902	5.9248	NaN	1	1	Median	1.195	1.232	53.67	2	2	Median	5.7416	6.3531	NaN	1	1	Median	143570000	47804000	95769000	0	0	0	18543000	1792000	16751000	104960000	43564000	61393000	20072000	2447800	17624000	22799	4361	21587	141796;141797;141798;141799;141800	191966;191967;191968;191969;191970	191968			5	
HQAFEAELHANADR	0	Unmodified	1607.7441	0.74406667	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.655	24.63	3	0.023794	20431	160511_QHF_FH_JSI12i_3	24.706	19.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22800	2470	21588	141801	191971	191971			1	
HQAFEAELSANQSR	0	Unmodified	1586.7437	0.74373232	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	28.733	28.085	2;3	0.0073396	23858	160511_QHF_FH_JSI12i_2	50.284	33.652			1.9093	2.0684	58.628	2	2	Median	NaN	NaN	NaN	0	0	Median	1.103	1.3665	NaN	1	1	Median	3.3049	3.131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47528000	20160000	27368000	0	0	0	30704000	17046000	13657000	16824000	3113300	13711000	0	0	0	22801	2470	21589	141802;141803;141804	191972;191973;191974	191972			3	
HQAFEAEVQANSGAIVK	1	Unmodified	1797.901	0.90096124	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.826	45.431	3	0.002015	38868	160511_QHF_FH_JSI12i_2	52.424	42.674			1.501	1.6093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.501	1.6093	NaN	1	1	Median	24393000	8120300	16272000	0	0	0	0	0	0	0	0	0	24393000	8120300	16272000	22802	2470	21590	141805	191975	191975			1	
HQAFMAELASNK	1	Unmodified	1345.6449	0.6448699	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	37.697	37.615	2	4.7265E-06	32855	160511_QHF_FH_JSI11i_3	122.51	60.951			0.81369	0.79562	30.163	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67173	0.64281	NaN	1	0	Median	0.98566	0.98477	NaN	1	1	Median	139520000	55747000	83770000	0	0	0	0	0	0	83696000	41046000	42650000	55820000	14701000	41120000	22803	2162	21591	141806;141807;141808;141809	191976;191977;191978;191979	191977			4	
HQALQAEIAGHEPR	0	Unmodified	1555.7855	0.78553755	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	25.142	25.11	3	0.0074804	20866	160511_QHF_FH_JSI12i_3	36.219	21.961			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22804	2470	21592	141810	191980	191980			1	
HQAMAIAYFHPQK	1	Unmodified	1540.7609	0.76090271	3476	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	45.433	40.479	3	2.0684E-05	22139	160513_QHF_FH_JSI11Kac_6	101.89	90.197			0.40717	0.40777	49.078	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29169	0.2882	NaN	1	1	Median	0.56837	0.57694	NaN	1	1	Median	32923000	21966000	10957000	0	0	0	0	0	0	6827500	4850600	1976900	26096000	17115000	8980500	22805	3476	21593	141811;141812	191981;191982	191981			2	
HQAQIDHYLGLANK	1	Unmodified	1606.8216	0.82158871	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.28		3	7						5	2	1	4	8	47.073	43.978	2;3;4	9.3092E-08	38382	160511_QHF_FH_JSI11i_3	184.03	164.27			1.003	0.99531	110.15	14	13	Median	2.3056	1.9308	162.36	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88858	0.84239	93.894	4	4	Median	1.0923	1.2066	117.79	8	8	Median	1772900000	901980000	870950000	72059000	36397000	35662000	0	0	0	543600000	317880000	225710000	1157300000	547700000	609570000	22806	4919	21594	141813;141814;141815;141816;141817;141818;141819;141820;141821;141822;141823;141824;141825;141826;141827	191983;191984;191985;191986;191987;191988;191989;191990;191991;191992;191993;191994;191995;191996;191997;191998;191999;192000;192001	191986			19	
HQASINELK	1	Unmodified	1038.5458	0.54580778	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	14.459	13.869	2	0.00022815	10926	160511_QHF_FH_JSI11i_2	99.973	65.801			1.0643	1.1773	72.976	6	6	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2853	130.83	2	2	Median	0.95149	0.94402	90.482	2	2	Median	1.0643	1.1773	17.67	2	2	Median	304950000	140530000	164420000	18341000	0	18341000	55236000	28315000	26921000	123630000	62128000	61504000	107740000	50090000	57649000	22807	4719	21595	141828;141829;141830;141831;141832;141833;141834	192002;192003;192004;192005;192006;192007;192008	192006			7	
HQCITAMK	1	Unmodified	987.46301	0.46300613	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	10.384	9.9394	2	0.001895	7577	160511_QHF_FH_JSI12i_2	95.531	57.292			1.4716	1.5688	96.247	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7652	0.79435	NaN	1	1	Median	2.83	3.0985	NaN	1	1	Median	45034000	11936000	33098000	0	0	0	0	0	0	22718000	7957200	14761000	22316000	3979000	18337000	22808	1790	21596	141835;141836	192009;192010	192009			2	
HQDPGDPGPGIR	0	Unmodified	1244.5898	0.58979786	3624	Q8ND04	SMG8	Protein SMG8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.603	11.867	2	0.0064681	9274	160511_QHF_FH_JSI12i_2	52.579	18.326			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22809	3624	21597	141837	192011	192011			1	
HQDVFNQPTLNSFMGLGQAAWK	1	Unmodified	2488.1958	0.19576305	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		99.759	99.636	3	0.028585	88217	160511_QHF_FH_JSI10i_2	27.739	19.935			0.69841	0.77987	12.237	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69747	0.85036	NaN	1	1	Median	0.69936	0.71523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35403000	23241000	12162000	0	0	0	14700000	10619000	4080600	20703000	12622000	8081200	0	0	0	22810	1104	21598	141838;141839	192012;192013	192013			2	
HQDVPSQDDSKPTQR	1	Unmodified	1736.8078	0.80778914	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.67	0.471		1	2								1	1	1	7.9009	7.7753	3	4.4436E-05	5753	160511_QHF_FH_JSI10i_2	89.484	76.348			0.75783	0.94161	31.801	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75783	0.94161	NaN	1	0	Median	0.65538	0.63542	NaN	1	0	Median	1.1876	1.1925	NaN	1	0	Median	189110000	96241000	92867000	0	0	0	68595000	38301000	30294000	63842000	37665000	26177000	56671000	20275000	36396000	22811	4959	21599	141840;141841;141842	192014;192015;192016	192014			3	
HQEAEMAQNAVR	0	Unmodified	1382.6361	0.63609612	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.062	12.272	2	0.036934	9648	160511_QHF_FH_JSI12i_2	46.462	21.686			0.4938	0.52289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4938	0.52289	NaN	1	1	Median	17236000	12655000	4581200	0	0	0	0	0	0	0	0	0	17236000	12655000	4581200	22812	1422	21600	141843	192017	192017			1	
HQEGEIFDTEK	1	Unmodified	1331.5994	0.59935949	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.22	5	14	10				2	6		8	9	11	9	26.181	23.449	2;3	3.8782E-23	20401	160511_QHF_FH_JSI10i_2	174.42	147.12			0.87136	0.87692	64.312	34	19	Median	1.2898	1.1065	53.927	8	5	Median	0.68234	0.81587	65.315	7	3	Median	0.94226	0.946	88.527	11	9	Median	0.72326	0.79978	37.147	8	2	Median	9519800000	4639300000	4880500000	1700200000	713760000	986480000	1457300000	695110000	762190000	4566600000	2375400000	2191100000	1795700000	854980000	940700000	22813	2196	21601	141844;141845;141846;141847;141848;141849;141850;141851;141852;141853;141854;141855;141856;141857;141858;141859;141860;141861;141862;141863;141864;141865;141866;141867;141868;141869;141870;141871;141872;141873;141874;141875;141876;141877;141878;141879;141880	192018;192019;192020;192021;192022;192023;192024;192025;192026;192027;192028;192029;192030;192031;192032;192033;192034;192035;192036;192037;192038;192039;192040;192041;192042;192043;192044;192045;192046;192047;192048;192049;192050;192051;192052;192053;192054;192055;192056;192057;192058;192059;192060;192061;192062;192063;192064;192065;192066;192067;192068;192069;192070;192071;192072;192073;192074;192075;192076	192068			58	
HQEHILR	0	Unmodified	931.4988	0.49879801	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.2885	6.3862	2	0.021135	3990	160511_QHF_FH_JSI12i_3	56.014	22.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22814	2380	21602	141881	192077	192077			1	
HQELETLK	1	Unmodified	996.52401	0.52400971	4667	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	1		2	15.282	14.475	2	0.0052486	11651	160511_QHF_FH_JSI12i_2	74.127	27.06			1.5995	1.6632	35.103	4	3	Median	1.7869	1.5604	NaN	1	1	Median	1.4317	1.7727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8384	1.9587	57.86	2	2	Median	86448000	35872000	50576000	18955000	6868300	12086000	19220000	8137900	11082000	0	0	0	48273000	20866000	27407000	22815	4667	21603	141882;141883;141884;141885	192078;192079;192080;192081	192078			4	
HQELPGKK	2	Unmodified	935.51886	0.51886475	4723	Q9H4K7	MTG2	Mitochondrial ribosome-associated GTPase 2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.961	14.723	2	0.051705	11791	160511_QHF_FH_JSI11i_2	50.966	10.964			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127820000	127820000	0	0	0	0	0	0	0	127820000	127820000	0	0	0	0	22816	4723	21604	141886	192082	192082			1	
HQEPVYSVAFSPDGR	0	Unmodified	1687.7954	0.79543354	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	3	2	1	48.688	47.802	2;3	9.5938E-05	41155	160511_QHF_FH_JSI11i_2	106.49	98.082			1.0815	1.2374	15.023	6	4	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.3224	18.799	3	3	Median	1.112	1.128	18.759	2	0	Median	1.0889	1.1887	NaN	1	1	Median	247100000	116720000	130380000	0	0	0	108520000	54751000	53764000	120030000	53100000	66928000	18553000	8869700	9683500	22817	4568	21605	141887;141888;141889;141890;141891;141892;141893;141894	192083;192084;192085;192086;192087;192088;192089;192090;192091	192087			8	
HQEYLNSILQHAK	1	Unmodified	1579.8107	0.81068967	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		1	2						2	1	1	2	1	53.503	48.896	3	0.0001236	41902	160511_QHF_FH_JSI12i_3	88.075	84.041			1.1673	1.1429	2.6622	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1646	1.1216	NaN	1	1	Median	1.17	1.1646	NaN	1	1	Median	110200000	36184000	74013000	13196000	0	13196000	4989700	0	4989700	14683000	2394600	12289000	77328000	33789000	43539000	22818	1736;1737	21606	141895;141896;141897;141898;141899	192092;192093;192094;192095;192096	192095			5	
HQFAWPFQQPVDAVK	1	Unmodified	1796.8998	0.89983903	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.884	75.746	3	0.00095203	65681	160511_QHF_FH_JSI12i_3	63.128	51.514			0.52415	0.54601	5.4271	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55526	0.52545	NaN	1	1	Median	0.49479	0.56737	NaN	1	1	Median	138660000	89012000	49645000	0	0	0	0	0	0	65470000	43621000	21849000	73187000	45391000	27796000	22819	457	21607	141900;141901	192097;192098	192098			2	
HQFGQEK	1	Unmodified	872.41407	0.41406533	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			5.1943	4.7873	2	0.049097	2824	160511_QHF_FH_JSI10i_2	47.849	21.74			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13929000	0	13929000	0	0	0	13929000	0	13929000	0	0	0	0	0	0	22820	5459	21608	141902	192099	192099			1	
HQFGTDK	1	Unmodified	831.38752	0.38751622	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	5.6132	5.0291	2	0.023109	3033	160511_QHF_FH_JSI12i_2	58.917	7.13			3.2029	3.4948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2029	3.4948	NaN	1	1	Median	38866000	6688500	32178000	0	0	0	0	0	0	0	0	0	38866000	6688500	32178000	22821	644	21609	141903	192100	192100			1	
HQFYPTVVYLTK	1	Unmodified	1494.7871	0.78710068	3309	Q86TM6	SYVN1	E3 ubiquitin-protein ligase synoviolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	70.103	62.135	2	1.7103E-06	34086	160513_QHF_FH_JSI10Kac_6	112.13	97.706			0.85801	0.78774	44.605	3	3	Median	0.85801	0.74789	NaN	1	1	Median	0.99261	1.1435	52.702	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37227000	20778000	16449000	9518100	5950300	3567800	27709000	14828000	12882000	0	0	0	0	0	0	22822	3309	21610	141904;141905;141906;141907;141908	192101;192102;192103;192104;192105	192105			5	
HQGVMVGMGQK	1	2 Oxidation (M)	1202.5536	0.55361205	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	4.84		30	28					4	7	15	20	12	22	13.064	11.294	2;3	0.00044088	14410	160511_QHF_FH_JSI12i_2	63.624	55.52			0.83202	0.86562	203.93	65	33	Median	1.3897	1.2005	181.14	15	9	Median	0.58952	0.726	193.31	19	10	Median	0.84689	0.83225	217.11	12	8	Median	0.74465	0.85315	211.84	19	6	Median	22508000000	11847000000	10661000000	2478400000	795910000	1682500000	4692300000	2499300000	2193000000	6286600000	3442100000	2844500000	9050500000	5109600000	3940900000	22823	1916;2015;2062;2070;2865	21611	141909;141910;141911;141912;141913;141914;141915;141916;141917;141918;141919;141920;141921;141922;141923;141924;141925;141926;141927;141928;141929;141930;141931;141932;141933;141934;141935;141936;141937;141938;141939;141940;141941;141942;141943;141944;141945;141946;141947;141948;141949;141950;141951;141952;141953;141954;141955;141956;141957;141958;141959;141960;141961;141962;141963;141964;141965;141966;141967;141968;141969;141970;141971;141972;141973;141974;141975;141976;141977	192106;192107;192108;192109;192110;192111;192112;192113;192114;192115;192116;192117;192118;192119;192120;192121;192122;192123;192124;192125;192126;192127;192128;192129;192130;192131;192132;192133;192134;192135;192136;192137;192138;192139;192140;192141;192142;192143;192144;192145;192146;192147;192148;192149;192150;192151;192152;192153;192154;192155;192156;192157;192158;192159;192160;192161;192162;192163;192164;192165;192166;192167;192168;192169;192170;192171;192172;192173;192174;192175;192176;192177;192178;192179	192121		1578;1579;2158;2159	73	
HQGVMVGMGQK	1	Unmodified	1170.5638	0.5637828	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	5.18		58	30					3	16	27	26	25	29	21.071	18.939	2;3	4.1092E-18	14917	160511_QHF_FH_JSI10i_2	161.92	142.82			0.34157	0.33874	265.98	101	66	Median	0.58153	0.49798	230.65	25	17	Median	0.16688	0.19292	259.9	24	15	Median	0.24368	0.24496	273.55	24	15	Median	0.35049	0.38075	298.45	28	19	Median	153260000000	76793000000	76470000000	16062000000	7735400000	8326700000	27694000000	17230000000	10464000000	48889000000	27337000000	21552000000	60618000000	24490000000	36128000000	22824	1916;2015;2062;2070;2865	21611	141978;141979;141980;141981;141982;141983;141984;141985;141986;141987;141988;141989;141990;141991;141992;141993;141994;141995;141996;141997;141998;141999;142000;142001;142002;142003;142004;142005;142006;142007;142008;142009;142010;142011;142012;142013;142014;142015;142016;142017;142018;142019;142020;142021;142022;142023;142024;142025;142026;142027;142028;142029;142030;142031;142032;142033;142034;142035;142036;142037;142038;142039;142040;142041;142042;142043;142044;142045;142046;142047;142048;142049;142050;142051;142052;142053;142054;142055;142056;142057;142058;142059;142060;142061;142062;142063;142064;142065;142066;142067;142068;142069;142070;142071;142072;142073;142074;142075;142076;142077;142078;142079;142080;142081;142082;142083;142084	192180;192181;192182;192183;192184;192185;192186;192187;192188;192189;192190;192191;192192;192193;192194;192195;192196;192197;192198;192199;192200;192201;192202;192203;192204;192205;192206;192207;192208;192209;192210;192211;192212;192213;192214;192215;192216;192217;192218;192219;192220;192221;192222;192223;192224;192225;192226;192227;192228;192229;192230;192231;192232;192233;192234;192235;192236;192237;192238;192239;192240;192241;192242;192243;192244;192245;192246;192247;192248;192249;192250;192251;192252;192253;192254;192255;192256;192257;192258;192259;192260;192261;192262;192263;192264;192265;192266;192267;192268;192269;192270;192271;192272;192273;192274;192275;192276;192277;192278;192279;192280;192281;192282;192283;192284;192285;192286;192287;192288;192289;192290;192291;192292;192293;192294;192295;192296;192297;192298	192253			113	
HQGVMVGMGQK	1	Oxidation (M)	1186.5587	0.55869743	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.32		52	41					6	17	29	29	32	26	14.462	12.487	2;3	4.6735E-06	6536	160511_QHF_FH_JSI12i_2	120.99	109.84			1.0812	1.0001	186.9	111	90	Median	2.5125	2.1191	161.07	27	20	Median	0.72399	0.87326	177.93	27	20	Median	1.6625	1.5962	200.83	31	28	Median	0.42899	0.46365	198.65	26	22	Median	63899000000	34311000000	29587000000	7583700000	2939700000	4643900000	9598300000	5616700000	3981600000	21624000000	11198000000	10427000000	25092000000	14557000000	10535000000	22825	1916;2015;2062;2070;2865	21611	142085;142086;142087;142088;142089;142090;142091;142092;142093;142094;142095;142096;142097;142098;142099;142100;142101;142102;142103;142104;142105;142106;142107;142108;142109;142110;142111;142112;142113;142114;142115;142116;142117;142118;142119;142120;142121;142122;142123;142124;142125;142126;142127;142128;142129;142130;142131;142132;142133;142134;142135;142136;142137;142138;142139;142140;142141;142142;142143;142144;142145;142146;142147;142148;142149;142150;142151;142152;142153;142154;142155;142156;142157;142158;142159;142160;142161;142162;142163;142164;142165;142166;142167;142168;142169;142170;142171;142172;142173;142174;142175;142176;142177;142178;142179;142180;142181;142182;142183;142184;142185;142186;142187;142188;142189;142190;142191;142192;142193;142194;142195;142196;142197;142198;142199;142200	192299;192300;192301;192302;192303;192304;192305;192306;192307;192308;192309;192310;192311;192312;192313;192314;192315;192316;192317;192318;192319;192320;192321;192322;192323;192324;192325;192326;192327;192328;192329;192330;192331;192332;192333;192334;192335;192336;192337;192338;192339;192340;192341;192342;192343;192344;192345;192346;192347;192348;192349;192350;192351;192352;192353;192354;192355;192356;192357;192358;192359;192360;192361;192362;192363;192364;192365;192366;192367;192368;192369;192370;192371;192372;192373;192374;192375;192376;192377;192378;192379;192380;192381;192382;192383;192384;192385;192386;192387;192388;192389;192390;192391;192392;192393;192394;192395;192396;192397;192398;192399;192400;192401;192402;192403;192404;192405;192406;192407;192408;192409;192410;192411;192412;192413;192414;192415;192416	192317		1578;1579;2158;2159	117	
HQGVMVGMGQKDCYVGDEAQSK	2	Unmodified	2423.0668	0.066799071	2865	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		15.243	15.119	3	0.042797	12537	160511_QHF_FH_JSI11i_1	27.739	23.935			0.15049	0.14213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15049	0.14213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62936000	59258000	3678200	0	0	0	0	0	0	62936000	59258000	3678200	0	0	0	22826	2865	21612	142201	192417	192417			1	
HQGVMVGMGQKDSYVGDEAQSK	2	Unmodified	2350.0682	0.06817928	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	1			By MS/MS		3	0			1									1		35.221	35.221	3	0.00012165	30744	160511_QHF_FH_JSI11i_3	55.705	39.731			0.38338	0.35935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38338	0.35935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19708000	16264000	3444400	0	0	0	0	0	0	19708000	16264000	3444400	0	0	0	22827	1916;2015;2062;2070	21613	142202	192418	192418			1	
HQGVMVGMGQKDSYVGDEAQSK	2	Acetyl (K)	2392.0787	0.078743966	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.484								3	5	1	4	2	1	57.749	48.008	3	1.3644E-05	26339	160513_QHF_FH_JSI10Kac_6	118.16	101.28			0.58036	0.63054	79.119	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92944	1.1033	NaN	1	0	Median	0.36239	0.36037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62459000	37696000	24763000	5027600	0	5027600	24967000	11050000	13917000	29508000	23689000	5818800	2956700	2956700	0	22828	1916;2015;2062;2070	21613	142203;142204;142205;142206;142207;142208;142209;142210	192419;192420;192421;192422;192423;192424;192425;192426;192427;192428;192429	192428	1913;1918		11	
HQGVMVGMGQKDSYVGDEAQSK	2	Acetyl (K);2 Oxidation (M)	2424.0686	0.06857321	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	2	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	1	2	42.685	32.651	3	2.4234E-05	18507	160513_QHF_FH_JSI11Kac_5	70.917	56.756			0.55516	0.62177	37.334	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33361	0.32662	NaN	1	0	Median	0.56465	0.62356	0.40611	2	0	Median	30361000	18503000	11858000	0	0	0	1345500	0	1345500	13160000	8622400	4538000	15855000	9880200	5974500	22829	1916;2015;2062;2070	21613	142211;142212;142213;142214	192430;192431;192432;192433;192434;192435;192436	192434	1913;1918	1578;1579	7	
HQGVMVGMGQKDSYVGDEAQSK	2	Acetyl (K);Oxidation (M)	2408.0737	0.073658588	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	15	0.471							1	7	1		3	2	4	50.25	39.827	3	2.4473E-05	20980	160513_QHF_FH_JSI11Kac_5	72.145	63.857			0.6327	0.68444	83.331	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2361	1.4723	27.947	2	0	Median	0.36059	0.35881	10.956	2	0	Median	NaN	NaN	NaN	0	0	Median	66204000	46379000	19825000	0	0	0	13077000	4904500	8172400	47782000	36130000	11652000	5345000	5345000	0	22830	1916;2015;2062;2070	21613	142215;142216;142217;142218;142219;142220;142221;142222;142223	192437;192438;192439;192440;192441;192442;192443;192444;192445;192446;192447;192448;192449	192439	1913;1918	1578;1579	13	
HQILEQAVEDYAETVHQLSK	1	Unmodified	2337.1601	0.16008906	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	88.592	88.482	3	2.3309E-11	76911	160511_QHF_FH_JSI12i_3	125.79	116.94			1.2385	1.2043	84.242	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2385	1.2043	84.242	2	2	Median	58213000	24788000	33425000	0	0	0	0	0	0	0	0	0	58213000	24788000	33425000	22831	2162	21614	142224;142225	192450;192451	192451			2	
HQITYLIHQAK	1	Unmodified	1350.7408	0.74081919	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	1	2	2	4	37.503	30.171	3	0.0028866	15858	160513_QHF_FH_JSI12Kac_6	48.115	40.913			0.89317	0.99996	59.79	9	2	Median	1.4266	1.1928	NaN	1	0	Median	0.79538	0.9166	12.451	2	0	Median	0.69905	0.67604	73.507	2	0	Median	0.772	0.86234	80.626	4	2	Median	190130000	74890000	115240000	14921000	4953000	9967600	45618000	24917000	20701000	14009000	7336900	6672200	115590000	37683000	77903000	22832	3875	21615	142226;142227;142228;142229;142230;142231;142232;142233;142234	192452;192453;192454;192455;192456;192457;192458;192459;192460;192461	192458			8	
HQIVEVAGDDK	1	Unmodified	1209.599	0.59896556	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	19.22	18.53	2	0.0001901	15138	160511_QHF_FH_JSI11i_2	141.73	103.43			0.6001	0.62954	103.09	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30744	0.3037	NaN	1	1	Median	1.1713	1.305	NaN	1	1	Median	154080000	102930000	51147000	0	0	0	0	0	0	80881000	57499000	23382000	73197000	45432000	27765000	22833	2261	21616	142235;142236	192462;192463	192463			2	
HQKPVLTGQR	1	Acetyl (K)	1204.6677	0.66765425	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	22.064	14.53	2;3	0.0098999	8819	160513_QHF_FH_JSI10Kac_6	68.224	50.838			0.11986	0.13249	231.52	3	3	Plateau	12.269	10.699	NaN	1	1	Median	0.27918	0.33392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11986	0.13249	NaN	1	1	Median	14185000	11659000	2526200	2256100	89217	2166800	5530800	5287300	243530	3181900	3181900	0	3216500	3100700	115790	22834	5722	21617	142237;142238;142239;142240;142241	192464;192465;192466;192467;192468	192468	3538		5	
HQKQLER	1	Acetyl (K)	979.51993	0.51992738	1426;1073	P15311;P35241	EZR;RDX	Ezrin;Radixin	no	no	1	0	0	1			By MS/MS		16	0									2			2		8.4936	-0.86973	2;3	0.012686	2987	160513_QHF_FH_JSI11Kac_6	63.565	34.607			0.19211	0.18921	16.016	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19211	0.18921	16.016	2	1	Median	NaN	NaN	NaN	0	0	Median	19116000	15418000	3697800	0	0	0	0	0	0	19116000	15418000	3697800	0	0	0	22835	1073;1426	21618	142242;142243	192469;192470	192470	910		2	
HQKQMER	1	Acetyl (K)	997.47635	0.47634801	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		5.5988	-3.7654	2	0.0092941	1772	160513_QHF_FH_JSI11Kac_6	92.47	54.912			0.2242	0.21986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2242	0.21986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15234000	11993000	3240300	0	0	0	0	0	0	15234000	11993000	3240300	0	0	0	22836	1270	21619	142244	192471;192472	192472	1171		2	
HQLEETK	1	Unmodified	883.43995	0.43994572	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	5.0709	4.4996	2	0.05376	2494	160511_QHF_FH_JSI12i_2	46.994	5.767			0.46599	0.50581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46599	0.50581	NaN	1	1	Median	32862000	23205000	9656500	0	0	0	0	0	0	0	0	0	32862000	23205000	9656500	22837	1201	21620	142245	192473	192473			1	
HQLEETKK	2	Unmodified	1011.5349	0.53490874	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	4.2801	4.1489	2;3	0.00038521	2193	160511_QHF_FH_JSI11i_2	80.688	56.92			1.1742	1.0409	154.87	7	2	Median	1.1742	1.0209	NaN	1	0	Median	0.77802	0.96737	NaN	1	0	Median	1.2738	1.2615	27.185	2	0	Median	2.2274	2.2607	266.22	3	2	Median	825000000	343230000	481770000	98005000	46426000	51579000	176120000	87379000	88739000	253240000	105190000	148050000	297630000	104230000	193400000	22838	1201	21621	142246;142247;142248;142249;142250;142251;142252	192474;192475;192476;192477;192478	192475			5	
HQLNELGSESAK	1	Unmodified	1311.6419	0.64189301	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		15.39	14.937	2	0.014381	12548	160511_QHF_FH_JSI10i_2	52.725	32.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31927000	0	31927000	0	0	0	8654500	0	8654500	23273000	0	23273000	0	0	0	22839	3063	21622	142253;142254	192479;192480	192480			2	
HQLQEASR	0	Unmodified	967.48354	0.48354187	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	4.91	4.5192	2	0.00037128	2405	160511_QHF_FH_JSI11i_2	130.56	63.569			1.9544	1.9746	76.288	3	3	Median	NaN	NaN	NaN	0	0	Median	0.57506	0.68966	NaN	1	1	Median	1.9544	1.9746	NaN	1	1	Median	2.6729	3.039	NaN	1	1	Median	370400000	174680000	195720000	0	0	0	150620000	98097000	52524000	168500000	63785000	104720000	51281000	12796000	38485000	22840	485	21623	142255;142256;142257	192481;192482;192483	192482			3	
HQLTEVGLLDNPELR	0	Unmodified	1732.9108	0.91079765	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			65.204	64.369	3	6.4189E-05	57089	160511_QHF_FH_JSI10i_2	80.719	72.334			0.85011	1.0214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85011	1.0214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74928000	32622000	42306000	0	0	0	74928000	32622000	42306000	0	0	0	0	0	0	22841	3648	21624	142258	192484	192484			1	
HQMEMLMEVGK	1	Oxidation (M)	1347.5985	0.59851333	5759				yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	24.244	23.441	2	0.013116	19462	160511_QHF_FH_JSI11i_2	49.418	33.215	+		0.97704	0.8933	107.17	6	1	Median	0.55333	0.4648	0	2	0	Median	0.32569	0.40458	NaN	1	0	Median	1.7252	1.7168	0	2	0	Median	5.3698	5.9769	NaN	1	1	Median	142520000	68892000	73629000	45336000	28720000	16616000	24456000	18396000	6060300	63897000	21254000	42643000	8831300	522320	8309000	22842	5759	21625	142259;142260;142261;142262;142263;142264	192485;192486;192487	192487		2743	3	
HQNVQLPR	0	Unmodified	990.53591	0.5359118	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.54		9	4						7	4	5	5	6	16.014	13.098	2;3	5.5658E-11	10140	160511_QHF_FH_JSI12i_3	174.21	134.1			1.0099	1.0012	55.506	20	10	Median	1.0791	0.93181	46.129	4	1	Median	0.66448	0.75516	53.455	5	3	Median	1.0432	1.0041	67.962	5	1	Median	1.0788	1.1712	62.744	6	5	Median	5857700000	2733900000	3123800000	879050000	330920000	548130000	964650000	544690000	419960000	2068600000	898090000	1170500000	1945400000	960190000	985220000	22843	1281	21626	142265;142266;142267;142268;142269;142270;142271;142272;142273;142274;142275;142276;142277;142278;142279;142280;142281;142282;142283;142284	192488;192489;192490;192491;192492;192493;192494;192495;192496;192497;192498;192499;192500;192501;192502;192503;192504;192505;192506;192507;192508;192509;192510;192511;192512	192507			25	
HQPNWSPK	1	Unmodified	992.48281	0.48281359	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	12.034	12.124	2	0.0064747	9264	160511_QHF_FH_JSI12i_3	71.342	48.72			1.4539	1.4767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4539	1.4767	NaN	1	1	Median	57174000	18047000	39127000	0	0	0	0	0	0	0	0	0	57174000	18047000	39127000	22844	777	21627	142285	192513	192513			1	
HQPPQPK	1	Unmodified	830.43989	0.43988615	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	4.795	4.4034	2	0.010327	2249	160511_QHF_FH_JSI12i_2	75.311	49.202			0.85134	0.79422	63.817	4	1	Median	0.97626	0.84055	NaN	1	0	Median	0.21046	0.25716	NaN	1	1	Median	0.7424	0.75045	NaN	1	0	Median	0.9775	1.0983	NaN	1	0	Median	733050000	379440000	353600000	135920000	54094000	81825000	137160000	108830000	28324000	299950000	138690000	161260000	160030000	77826000	82200000	22845	4619	21628	142286;142287;142288;142289	192514;192515;192516	192514			3	
HQPSTPDPFLKPR	1	Acetyl (K)	1560.8049	0.80487601	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	1	By MS/MS	By MS/MS			15	0								2		1	1			56.599	46.021	3	0.049686	24600	160513_QHF_FH_JSI9Kac_5	30.484	21.196			0.37566	0.43416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37566	0.43416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1890800	1482800	408020	0	0	0	1890800	1482800	408020	0	0	0	0	0	0	22846	190	21629	142290;142291	192517;192518	192517			2	
HQPTAIIAK	1	Unmodified	977.56581	0.56581494	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.45		9	8						9	7	6	7	6	18.218	15.036	2;3	5.1637E-06	12787	160511_QHF_FH_JSI9i_2	133.23	113.45			6.4564	5.5078	236	25	24	Median	7.6827	6.4698	186.45	6	6	Median	0.77116	0.91861	268.99	6	6	Median	1.71	1.6461	235.62	7	6	Median	1.2659	1.3306	274.87	6	6	Median	21330000000	11055000000	10275000000	4332300000	2042100000	2290200000	4762400000	2505200000	2257300000	6568300000	3186900000	3381300000	5667300000	3320800000	2346500000	22847	1322	21630	142292;142293;142294;142295;142296;142297;142298;142299;142300;142301;142302;142303;142304;142305;142306;142307;142308;142309;142310;142311;142312;142313;142314;142315;142316;142317	192519;192520;192521;192522;192523;192524;192525;192526;192527;192528;192529;192530;192531;192532;192533;192534;192535;192536;192537;192538;192539;192540;192541;192542;192543;192544;192545;192546;192547;192548;192549;192550;192551;192552	192534			33	
HQPTAIIAKTFK	2	Acetyl (K)	1395.7874	0.78743503	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	2	3	58.984	49.704	2;3	0.00019549	27288	160513_QHF_FH_JSI10Kac_6	93.258	64.171			0.3057	0.2604	266.6	4	4	Median	0.3057	0.2604	204.34	2	2	Median	NaN	NaN	NaN	0	0	Median	0.013356	0.012573	NaN	1	1	Median	4.0216	4.3854	NaN	1	1	Median	210430000	155140000	55295000	19559000	12512000	7047500	68814000	52864000	15950000	98022000	77877000	20144000	24039000	11886000	12153000	22848	1322	21631	142318;142319;142320;142321;142322;142323;142324;142325;142326;142327	192553;192554;192555;192556;192557;192558;192559;192560;192561;192562	192562	1245		10	
HQQLLEEK	1	Unmodified	1023.5349	0.53490874	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.014	11.809	2	0.0022442	9183	160511_QHF_FH_JSI11i_2	79.474	47.004			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22849	1437	21632	142328	192563	192563			1	
HQQLLGEVLTQLSSR	0	Unmodified	1707.9268	0.92678206	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			84.714	83.506	3	3.2881E-12	73554	160511_QHF_FH_JSI9i_2	91.207	68.732			0.42328	0.49827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42328	0.49827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16717000	10877000	5839700	0	0	0	16717000	10877000	5839700	0	0	0	0	0	0	22850	2453	21633	142329;142330	192564;192565	192565			2	
HQQLSGLHK	1	Unmodified	1046.5621	0.56212655	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	7.5776	7.6753	2;3	0.00018602	5170	160511_QHF_FH_JSI12i_3	103.56	30.303			0.39546	0.39921	20.187	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39546	0.39921	20.187	2	2	Median	256220000	159890000	96331000	0	0	0	0	0	0	0	0	0	256220000	159890000	96331000	22851	2140	21634	142331;142332	192566;192567	192567			2	
HQSEIKPGEPEPQILDFQTQQYK	2	Unmodified	2739.3504	0.35040902	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	60.855	60.718	3;4	4.4182E-11	52352	160511_QHF_FH_JSI12i_3	105.16	98.442			0.90418	0.923	39.876	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2067	1.1392	65.643	2	2	Median	0.90418	0.923	4.2704	2	0	Median	214160000	105620000	108540000	0	0	0	0	0	0	85489000	40345000	45144000	128670000	65280000	63393000	22852	2624	21635	142333;142334;142335;142336	192568;192569;192570;192571;192572;192573;192574	192572			7	
HQSFVLVGETGSGK	1	Unmodified	1444.731	0.73104237	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.28		15	10						11	5	10	10	11	39.245	35.872	2;3	3.5125E-06	30773	160511_QHF_FH_JSI12i_2	124.12	111.88			1.2097	1.2656	69.647	35	34	Median	1.0173	0.87569	57.807	5	4	Median	1.2097	1.4872	70.566	9	9	Median	1.4343	1.4121	67.222	10	10	Median	0.53931	0.59454	81.744	11	11	Median	4259600000	2005800000	2253900000	416540000	191990000	224560000	787310000	421740000	365570000	1458100000	635020000	823110000	1597600000	757020000	840610000	22853	300	21636	142337;142338;142339;142340;142341;142342;142343;142344;142345;142346;142347;142348;142349;142350;142351;142352;142353;142354;142355;142356;142357;142358;142359;142360;142361;142362;142363;142364;142365;142366;142367;142368;142369;142370;142371;142372	192575;192576;192577;192578;192579;192580;192581;192582;192583;192584;192585;192586;192587;192588;192589;192590;192591;192592;192593;192594;192595;192596;192597;192598;192599;192600;192601;192602;192603;192604;192605;192606;192607;192608;192609;192610;192611;192612;192613;192614	192579			40	
HQSIEEAK	1	Unmodified	940.46141	0.46140945	2421	Q13464	ROCK1	Rho-associated protein kinase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.236	5.0419	2	0.0036616	2847	160511_QHF_FH_JSI11i_2	77.732	32.651			1.0888	1.0973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0888	1.0973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40608000	19273000	21335000	0	0	0	0	0	0	40608000	19273000	21335000	0	0	0	22854	2421	21637	142373	192615	192615			1	
HQSSNLNVPELNSINMSR	0	Unmodified	2038.9854	0.98543593	4236	Q96S59	RANBP9	Ran-binding protein 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.594	59.46	3	0.00022706	51190	160511_QHF_FH_JSI12i_3	65.022	38.587			1.4253	1.3454	0.39244	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4929	1.3492	NaN	1	1	Median	1.3608	1.3417	NaN	1	1	Median	60601000	24083000	36518000	0	0	0	0	0	0	33481000	12564000	20918000	27120000	11519000	15601000	22855	4236	21638	142374;142375	192616;192617;192618	192618			3	
HQTLQGLAFPLQPEAQR	0	Unmodified	1933.017	0.016994053	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	68.079	67.93	3	9.8756E-05	58742	160511_QHF_FH_JSI12i_3	65.47	61.079			0.60672	0.58992	40.461	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46958	0.44314	NaN	1	1	Median	0.7839	0.78532	NaN	1	0	Median	175280000	110120000	65166000	0	0	0	0	0	0	84735000	60977000	23758000	90547000	49138000	41408000	22856	3053	21639	142376;142377	192619;192620;192621;192622	192620			4	
HQTLQGVAFPISR	0	Unmodified	1452.7837	0.78374664	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							1	3	4	3	52.84	52.162	2;3	2.1496E-07	44444	160511_QHF_FH_JSI12i_3	108.58	103.73			0.89711	1.0833	30.699	11	5	Plateau	0.68371	0.57965	NaN	1	1	Median	0.68425	0.79253	17.15	3	1	Median	1.0814	1.0076	21.459	4	2	Median	1.0288	1.0609	43.085	3	1	Median	1018000000	447190000	570860000	39440000	19032000	20408000	180150000	91542000	88606000	354990000	143390000	211600000	443470000	193230000	250240000	22857	2306	21640	142378;142379;142380;142381;142382;142383;142384;142385;142386;142387;142388	192623;192624;192625;192626;192627;192628;192629;192630;192631;192632;192633;192634;192635;192636;192637;192638	192638			16	
HQTNLAR	0	Unmodified	838.44095	0.44094878	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		6	2							2	3	3		2.5649	2.2726	2	0.013827	972	160511_QHF_FH_JSI11i_2	68.915	35.177			0.62089	0.63328	188.35	8	8	Median	1.3881	1.1917	281.49	2	2	Median	0.10238	0.12474	202.45	3	3	Median	1.9524	2.028	171.43	3	3	Median	NaN	NaN	NaN	0	0	Median	328310000	163170000	165140000	77221000	34664000	42557000	110420000	62931000	47487000	140670000	65573000	75097000	0	0	0	22858	2672	21641	142389;142390;142391;142392;142393;142394;142395;142396	192639;192640;192641;192642;192643;192644;192645;192646	192644			8	
HQVEQLSSSLK	1	Unmodified	1254.6568	0.65681479	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	3	2	3	22.689	21.794	2;3	0.00043344	18615	160511_QHF_FH_JSI10i_2	87.258	71.998			2.0722	2.1213	161.67	10	10	Median	2.0545	1.7595	121.41	3	3	Median	0.30179	0.37251	102.65	3	3	Plateau	0.73205	0.72155	255.5	2	2	Median	9.5844	10.419	175.51	2	2	Median	389330000	197090000	192240000	80964000	38822000	42142000	154290000	90032000	64256000	89407000	46775000	42632000	64670000	21464000	43206000	22859	2587	21642	142397;142398;142399;142400;142401;142402;142403;142404;142405;142406;142407	192647;192648;192649;192650;192651;192652;192653;192654;192655;192656;192657	192655			11	
HQVEYLGLK	1	Unmodified	1085.5869	0.58694431	2332	Q12965;O00160	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	33.196	32.272	2	9.9483E-07	27324	160511_QHF_FH_JSI11i_2	145.17	72.688			0.23035	0.22939	121.97	3	3	Plateau	2.6918	2.2533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23035	0.22939	NaN	1	1	Median	0.31854	0.34285	NaN	1	1	Median	408480000	272480000	136000000	67777000	14998000	52778000	0	0	0	102500000	76503000	26001000	238200000	180980000	57218000	22860	2332	21643	142408;142409;142410;142411	192658;192659;192660;192661	192661			4	
HQVLFIADEIQTGLAR	0	Unmodified	1809.9737	0.97373226	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.69	81.464	3	0.051082	70795	160511_QHF_FH_JSI12i_3	14.472	6.1128			0.174	0.17535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.174	0.17535	NaN	1	1	Median	29350000	25662000	3687700	0	0	0	0	0	0	0	0	0	29350000	25662000	3687700	22861	808	21644	142412	192662	192662			1	
HQVSVEGTNQTDVK	1	Unmodified	1540.7481	0.74814899	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	14.857	14.268	2;3	0.00039851	11287	160511_QHF_FH_JSI11i_2	98.353	72.794			0.41514	0.47693	30.995	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.57667	0.70855	NaN	1	1	Median	0.82035	0.80354	NaN	1	1	Median	0.41313	0.44606	NaN	1	1	Median	61505000	42169000	19336000	0	0	0	18935000	15776000	3158800	17918000	6095200	11823000	24652000	20297000	4354800	22862	2557	21645	142413;142414;142415;142416;142417	192663;192664;192665;192666;192667;192668	192666			6	
HQYINEDEYEVNLK	1	Unmodified	1792.8268	0.82679325	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	2	3	49.257	48.282	2;3	3.8996E-30	42422	160511_QHF_FH_JSI10i_2	193.23	177.69			0.72745	0.78447	21.82	6	2	Linear	1.4484	1.2396	NaN	1	1	Median	1.0006	1.2231	NaN	1	0	Median	0.85272	0.85609	13.614	2	1	Median	0.83067	0.9288	27.192	2	0	Median	290420000	149100000	141330000	20482000	6126400	14356000	32549000	19822000	12727000	142920000	76820000	66100000	94471000	46326000	48144000	22863	3922	21646	142418;142419;142420;142421;142422;142423;142424	192669;192670;192671;192672;192673;192674;192675;192676;192677;192678;192679	192678			11	
HRDFVAEPMGEK	1	Unmodified	1414.6663	0.66633362	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							3	3	1		26.763	25.813	3	5.1498E-05	20393	160511_QHF_FH_JSI10i_3	73.887	65.477			0.86512	0.98426	37.587	6	3	Median	0.78979	0.66464	30.341	3	2	Median	0.86512	1.0046	13.682	2	1	Median	1.8204	1.6921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	399180000	200170000	199000000	133010000	72651000	60363000	109090000	65538000	43554000	157070000	61985000	95085000	0	0	0	22864	541	21647	142425;142426;142427;142428;142429;142430;142431	192680;192681;192682;192683;192684;192685;192686;192687;192688	192682			9	
HRDYETATLSDIK	1	Unmodified	1547.758	0.7579854	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		31.971	31.971	3	0.00011228	27785	160511_QHF_FH_JSI11i_3	97.551	70.142			2.404	2.2011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.404	2.2011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35088000	14788000	20300000	0	0	0	0	0	0	35088000	14788000	20300000	0	0	0	22865	361	21648	142432	192689	192689			1	
HSAESQILK	1	Unmodified	1011.5349	0.53490874	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	11.808	11.49	2	0.00023031	9370	160511_QHF_FH_JSI9i_2	84.615	15.016			0.3101	0.34459	184.73	7	6	Median	0.036537	0.031097	NaN	1	0	Median	0.059391	0.071861	NaN	1	1	Median	1.1602	1.068	204.95	3	3	Median	0.5954	0.63027	85.387	2	2	Median	848040000	576710000	271340000	84695000	81525000	3169900	143000000	128500000	14503000	384590000	222280000	162310000	235760000	144400000	91355000	22866	1495	21649	142433;142434;142435;142436;142437;142438;142439	192690;192691;192692;192693;192694;192695;192696;192697	192692			8	
HSAESQILKHLLK	2	Acetyl (K)	1544.8675	0.86747627	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.136	60.623	3	0.012064	32866	160513_QHF_FH_JSI11Kac_6	49.333	42.604			1.0119	0.9293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0119	0.9293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58559000	46883000	11676000	0	0	0	0	0	0	58559000	46883000	11676000	0	0	0	22867	1495	21650	142440	192698	192698	1511;1512		1	
HSAQTEEPVQAK	1	Unmodified	1323.6419	0.64189301	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		7.7958	7.5987	2	0.0066461	5273	160511_QHF_FH_JSI11i_2	52.278	43.415			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22868	2637	21651	142441;142442	192699;192700	192700			2	
HSASLIFLHGSGDSGQGLR	0	Unmodified	1937.9708	0.97077214	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	2	2		57.514	48.54	3	2.7716E-05	26549	160513_QHF_FH_JSI10Kac_6	124.18	114.77			1.2056	1.3131	39.952	4	3	Median	1.0191	0.86686	NaN	1	0	Median	1.111	1.3131	35.701	2	2	Median	2.0712	2.0046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100970000	45581000	55387000	26110000	11972000	14139000	69261000	32010000	37251000	5596600	1598300	3998300	0	0	0	22869	2996	21652	142443;142444;142445;142446;142447;142448	192701;192702;192703;192704;192705;192706	192705			6	
HSATFSSIVK	1	Unmodified	1075.5662	0.56620887	3017	Q66K74	MAP1S	Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.25	5.63			3						1	1		1	2	28.665	26.406	2	1.3671E-06	21687	160511_QHF_FH_JSI12i_3	129.38	95.13			1.768	1.7806	262.99	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0197	3.774	NaN	1	1	Median	0.22271	0.2255	292.24	2	2	Median	116700000	43841000	72862000	2314200	0	2314200	0	0	0	29083000	2219200	26864000	85306000	41622000	43684000	22870	3017	21653	142449;142450;142451;142452	192707;192708;192709;192710;192711	192710			5	
HSATPFLK	1	Unmodified	899.4865	0.48650199	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1								2	2	3	21.374	20.834	2	0.0028908	16985	160511_QHF_FH_JSI11i_2	83.753	47.872			1.8244	2.0309	129.84	5	5	Median	NaN	NaN	NaN	0	0	Median	10.106	12.59	NaN	1	1	Median	1.8737	1.8145	106.59	2	2	Median	0.90384	0.95848	106.19	2	2	Median	513740000	205840000	307900000	0	0	0	67961000	11589000	56372000	300670000	115130000	185540000	145110000	79126000	65980000	22871	900	21654	142453;142454;142455;142456;142457;142458;142459	192712;192713;192714;192715;192716;192717;192718	192714			7	
HSDELTSLLGYFPNK	1	Unmodified	1719.8468	0.84680041	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		87.629	87.058	3	0.025899	76583	160511_QHF_FH_JSI11i_2	34.82	30.64			1.0739	1.0385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0739	1.0385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14471000	5728200	8742600	0	0	0	0	0	0	14471000	5728200	8742600	0	0	0	22872	3896	21655	142460	192719	192719			1	
HSDELTSLLGYFPNKK	2	Unmodified	1847.9418	0.94176342	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	77.392	77.259	3	1.5798E-06	68937	160511_QHF_FH_JSI11i_3	118.52	107.15			0.92766	0.87258	74.268	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86081	0.77625	88.873	2	2	Median	0.97919	0.98753	89.829	2	2	Median	333050000	161750000	171300000	0	0	0	0	0	0	87577000	46712000	40865000	245480000	115040000	130440000	22873	3896	21656	142461;142462;142463;142464	192720;192721;192722;192723	192720			4	
HSDFFNVK	1	Unmodified	992.47158	0.4715802	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	33.042	32.276	2	0.0017524	28179	160511_QHF_FH_JSI10i_2	98.299	79.569			1.2249	1.2163	119.11	4	4	Median	NaN	NaN	NaN	0	0	Median	4.0443	4.83	NaN	1	1	Median	1.2249	1.2163	106.38	2	2	Median	0.34832	0.39942	NaN	1	1	Median	287400000	131170000	156230000	0	0	0	64502000	16933000	47569000	175480000	83447000	92038000	47411000	30786000	16624000	22874	5566	21657	142465;142466;142467;142468	192724;192725;192726;192727	192727			4	
HSDGNLCVK	1	Unmodified	1028.4709	0.47092828	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	8.5993	8.167	2	6.2439E-05	5912	160511_QHF_FH_JSI12i_2	115.71	88.46			0.4043	0.39105	157.56	6	6	Median	0.45017	0.38113	NaN	1	1	Median	0.13058	0.15708	NaN	1	1	Median	0.6127	0.61596	254.72	2	2	Median	1.1687	1.2948	165.69	2	2	Median	1138600000	660910000	477680000	50798000	35526000	15271000	146920000	116700000	30210000	547160000	334900000	212260000	393720000	173770000	219940000	22875	1661	21658	142469;142470;142471;142472;142473;142474	192728;192729;192730;192731;192732;192733	192729			6	
HSDVLFLAVK	1	Unmodified	1127.6339	0.63389451	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.885	58.382	2	0.00047078	50694	160511_QHF_FH_JSI11i_2	88.267	68.27			3.9382	3.9806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9382	3.9806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27315000	4617600	22697000	0	0	0	0	0	0	27315000	4617600	22697000	0	0	0	22876	4000	21659	142475	192734	192734			1	
HSEAATAQREEWK	1	Unmodified	1541.7223	0.7222686	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	13.743	13.779	3	0.030077	11360	160511_QHF_FH_JSI11i_3	33.204	26.165			1.2545	1.1909	66.799	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79886	0.7426	NaN	1	0	Median	1.97	1.91	NaN	1	0	Median	59633000	29128000	30505000	0	0	0	0	0	0	28790000	16213000	12577000	30843000	12915000	17928000	22877	2488	21660	142476;142477	192735	192735			1	
HSEAFEALQQK	1	Unmodified	1286.6255	0.62551466	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.21	0.41		11	3							2	2	4	6	28.224	27.53	2;3	5.5109E-15	23374	160511_QHF_FH_JSI12i_2	143.89	121.8			0.16054	0.14952	248.23	12	12	Median	1.1841	1.0171	266.63	2	2	Median	1.0252	1.2573	393.74	2	2	Median	4.6719	4.6087	312.48	4	4	Linear	0.68482	0.73576	206.62	4	4	Median	1300800000	683800000	617050000	217490000	100480000	117010000	258130000	152010000	106120000	484300000	268910000	215400000	340920000	162400000	178520000	22878	2252	21661	142478;142479;142480;142481;142482;142483;142484;142485;142486;142487;142488;142489;142490;142491	192736;192737;192738;192739;192740;192741;192742;192743;192744;192745;192746;192747;192748;192749;192750;192751;192752;192753	192741			18	
HSELLQK	1	Unmodified	853.46577	0.46576654	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		10.91	10.481	2	0.0042527	8056	160511_QHF_FH_JSI11i_2	86.472	28.661			0.4084	0.34504	142.45	3	2	Median	0.4084	0.34504	NaN	1	1	Median	0.065094	0.079716	NaN	1	1	Median	1.345	1.3762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	628630000	367050000	261580000	67205000	43830000	23375000	129530000	109760000	19776000	431890000	213470000	218420000	0	0	0	22879	5528	21662	142492;142493;142494;142495	192754;192755;192756;192757	192756			4	
HSELSELNVK	1	Unmodified	1154.5932	0.5931519	3883;580	Q92783;O75886	STAM;STAM2	Signal transducing adapter molecule 1;Signal transducing adapter molecule 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	29.149	28.406	2	2.6315E-05	24029	160511_QHF_FH_JSI12i_2	97.431	67.621			0.5114	0.59954	103.51	4	3	Median	NaN	NaN	NaN	0	0	Median	0.43351	0.54033	NaN	1	1	Median	1.1017	1.1155	167.55	2	2	Median	0.60328	0.66525	NaN	1	0	Median	632690000	318030000	314670000	0	0	0	174010000	105860000	68151000	382560000	164670000	217900000	76123000	47504000	28619000	22880	3883;580	21663	142496;142497;142498;142499	192758;192759;192760;192761	192758			4	
HSETFTR	0	Unmodified	876.40898	0.40897995	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	5.9461	5.6713	2	0.0093681	3513	160511_QHF_FH_JSI11i_2	79.451	64.675			1.2438	1.1521	84.713	4	1	Median	1.318	1.1226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1738	1.1824	NaN	1	0	Median	2.3761	2.5347	123.69	2	1	Median	892050000	421980000	470070000	171430000	71851000	99576000	0	0	0	368000000	214640000	153370000	352620000	135490000	217130000	22881	5448	21664	142500;142501;142502;142503	192762;192763;192764;192765;192766	192765			5	
HSETSATALMVAAGR	0	Unmodified	1500.7355	0.73547582	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			46.761	37.849	3	0.0048228	20885	160513_QHF_FH_JSI10Kac_6	52.265	41.053			0.20835	0.21353	84.24	2	2	Median	0.13376	0.1177	NaN	1	1	Median	0.32454	0.3874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5113100	4162700	950470	1765300	1585000	180290	3347800	2577600	770180	0	0	0	0	0	0	22882	4750	21665	142504;142505	192767;192768	192768			2	
HSEVETDSK	1	Unmodified	1030.4567	0.456718	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			3.4962	3.2563	2	0.00062933	1572	160511_QHF_FH_JSI10i_1	87.639	53.843			0.11853	0.13242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11853	0.13242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13036000	11433000	1602600	0	0	0	13036000	11433000	1602600	0	0	0	0	0	0	22883	5095	21666	142506	192769	192769			1	
HSEVQQANLK	1	Unmodified	1152.5887	0.58873523	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.7		8	2					1		4	3	2	2	9.5972	8.2654	2;3	9.2176E-07	6634	160511_QHF_FH_JSI9i_2	120.15	84.859			0.43166	0.49474	168.09	9	9	Median	0.93462	0.80391	218.37	2	2	Median	0.43166	0.49474	190.43	3	3	Median	0.75066	0.76956	239.29	2	2	Median	0.78381	0.88038	219.39	2	2	Median	2821100000	1657000000	1164100000	533870000	298130000	235740000	497410000	271840000	225570000	1033000000	632840000	400200000	756740000	454190000	302550000	22884	1438	21667	142507;142508;142509;142510;142511;142512;142513;142514;142515;142516;142517	192770;192771;192772;192773;192774;192775;192776;192777;192778;192779;192780	192776			11	
HSFSGSQQK	1	Unmodified	1004.4676	0.46755746	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.5942	4.6866	2	0.03125	2194	160511_QHF_FH_JSI12i_3	47.96	18.621			0.06768	0.068106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.06768	0.068106	NaN	1	1	Median	56391000	53702000	2688300	0	0	0	0	0	0	0	0	0	56391000	53702000	2688300	22885	302	21668	142518	192781	192781			1	
HSFYNNK	1	Unmodified	908.41407	0.41406533	5286	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.016	7.1137	2	0.014587	4677	160511_QHF_FH_JSI12i_3	66.138	38.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28093000	0	28093000	0	0	0	0	0	0	0	0	0	28093000	0	28093000	22886	5286	21669	142519	192782	192782			1	
HSGASAEVQK	1	Unmodified	1012.4938	0.49377221	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		4.797	4.4654	2	2.1254E-07	2418	160511_QHF_FH_JSI10i_2	116.52	65.911			0.96428	1.1797	23.278	3	0	Median	1.5493	1.3186	NaN	1	0	Median	0.96428	1.1797	NaN	1	0	Median	0.85031	0.84318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	486360000	251160000	235210000	138680000	63071000	75607000	136590000	73294000	63299000	211090000	114790000	96302000	0	0	0	22887	4294	21670	142520;142521;142522	192783;192784;192785	192785			3	
HSGASAEVQKEEEK	2	Unmodified	1527.7165	0.71651452	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.4	0.49		3	2							1	1	3		6.8336	6.6155	2;3	8.8039E-05	4008	160511_QHF_FH_JSI11i_3	104.21	85.148			0.73031	0.79847	57.853	4	1	Median	1.365	1.1593	NaN	1	0	Median	0.68291	0.81876	NaN	1	0	Median	0.49623	0.48373	67.329	2	1	Median	NaN	NaN	NaN	0	0	Median	443040000	278150000	164890000	95496000	39506000	55990000	151690000	99473000	52214000	195860000	139170000	56689000	0	0	0	22888	4294	21671	142523;142524;142525;142526;142527	192786;192787;192788	192787			3	
HSGEATNTVTK	1	Unmodified	1143.552	0.55201537	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	5.1168	4.7248	2	1.2718E-05	2596	160511_QHF_FH_JSI9i_2	107.83	71.887			2.5172	2.5823	102.52	4	4	Median	5.7751	4.9035	NaN	1	1	Median	1.0972	1.3599	NaN	1	1	Median	1.0682	1.0746	NaN	1	1	Median	8.0213	9.1477	NaN	1	1	Median	371140000	177720000	193420000	97991000	53905000	44085000	102010000	64231000	37778000	117990000	55193000	62798000	53151000	4388400	48762000	22889	21	21672	142528;142529;142530;142531;142532	192789;192790;192791;192792;192793	192790			5	
HSGGFLSSPADFSQENK	1	Unmodified	1806.8173	0.81729119	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48.387	48.267	3	0.00010092	41226	160511_QHF_FH_JSI12i_3	65.231	58.281			1.779	1.6645	10.135	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9794	1.7882	NaN	1	0	Median	1.599	1.5494	NaN	1	0	Median	92732000	30705000	62027000	0	0	0	0	0	0	48541000	14785000	33755000	44191000	15919000	28272000	22890	3239	21673	142533;142534;142535	192794;192795;192796	192795			3	
HSGNITFDEIVNIAR	0	Unmodified	1684.8533	0.85328277	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	5.69		9	5						4	6	3	4	5	78.151	76.089	2;3	1.7689E-40	68361	160511_QHF_FH_JSI9i_2	162.41	153.58			1.0157	1.0375	16.903	15	3	Median	1.0424	0.88973	16.118	3	1	Median	0.77378	0.96047	22.792	3	1	Plateau	1.13	1.0547	5.9427	4	0	Median	0.92311	0.93506	18.383	5	1	Median	3023800000	1464300000	1559500000	558500000	256230000	302280000	676180000	323040000	353140000	829650000	399000000	430650000	959430000	486010000	473410000	22891	1340	21674	142536;142537;142538;142539;142540;142541;142542;142543;142544;142545;142546;142547;142548;142549;142550;142551;142552;142553	192797;192798;192799;192800;192801;192802;192803;192804;192805;192806;192807;192808;192809;192810;192811;192812;192813;192814;192815;192816;192817;192818;192819;192820;192821;192822;192823;192824;192825;192826;192827;192828;192829;192830;192831;192832	192807			36	
HSGPNSADSANDGFVR	0	Unmodified	1629.7132	0.71316047	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.16	1	8	9				1	8	2	8	7	6	8	19.774	15.864	2;3	1.1573E-40	13070	160511_QHF_FH_JSI11i_2	170.22	166.16			0.995	1.0163	23.849	27	6	Median	1.2113	1.0418	30.979	7	2	Median	0.77683	0.91665	33.764	6	3	Median	1.0213	1.0287	12.47	6	0	Median	0.90054	1.0006	16.428	8	1	Median	5503700000	2509300000	2994400000	584330000	243080000	341240000	1177000000	637760000	539280000	2260800000	975490000	1285300000	1481500000	652920000	828610000	22892	1775	21675	142554;142555;142556;142557;142558;142559;142560;142561;142562;142563;142564;142565;142566;142567;142568;142569;142570;142571;142572;142573;142574;142575;142576;142577;142578;142579;142580;142581;142582	192833;192834;192835;192836;192837;192838;192839;192840;192841;192842;192843;192844;192845;192846;192847;192848;192849;192850;192851;192852;192853;192854;192855;192856;192857;192858;192859;192860;192861;192862;192863;192864;192865;192866;192867;192868;192869;192870;192871;192872;192873;192874;192875;192876;192877;192878	192861			46	
HSGSSHLPQQLK	1	Unmodified	1317.6789	0.67894722	2262	Q08117	AES	Amino-terminal enhancer of split	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	12.504	12.586	3	0.0072344	9672	160511_QHF_FH_JSI12i_3	42.475	26.719			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22893	2262	21676	142583	192879	192879			1	
HSGVDDMVLLSK	1	Unmodified	1299.6493	0.64928657	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	2	2	51.267	50.3	2;3	7.429E-06	43378	160511_QHF_FH_JSI11i_2	120.96	100.97			0.89339	0.97656	28.887	8	4	Median	1.2326	1.0747	NaN	1	0	Median	0.61534	0.75311	49.112	3	3	Median	0.99517	1.0264	2.0615	2	0	Median	0.73104	0.82598	18.698	2	1	Median	672120000	341610000	330520000	33631000	16666000	16966000	210540000	121010000	89529000	241800000	109450000	132350000	186150000	94477000	91673000	22894	2332	21677	142584;142585;142586;142587;142588;142589;142590;142591	192880;192881;192882;192883;192884;192885;192886;192887;192888;192889	192886			10	
HSHSQLPVGTGNK	1	Unmodified	1360.6848	0.68476088	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.781	10.876	3	0.02443	8179	160511_QHF_FH_JSI12i_3	30.107	6.7314			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22895	428	21678	142592	192890	192890			1	
HSISMPAMR	0	Unmodified	1028.4896	0.48955523	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.068	27.049	2	7.1384E-05	23276	160511_QHF_FH_JSI11i_3	96.253	64.317			1.7757	1.7291	37.918	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4066	2.2608	NaN	1	0	Median	1.3102	1.3225	NaN	1	0	Median	121510000	54328000	67182000	0	0	0	0	0	0	58861000	26098000	32763000	62649000	28230000	34420000	22896	2779	21679	142593;142594	192891;192892;192893	192891			3	
HSLAFVVR	0	Unmodified	927.52904	0.5290355	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		43.286	34.168	2	0.00078084	18710	160513_QHF_FH_JSI11Kac_6	102.71	54.21			0.90849	0.97047	182.11	2	2	Median	NaN	NaN	NaN	0	0	Median	0.22651	0.26774	NaN	1	1	Median	3.6438	3.5176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28090000	17410000	10680000	0	0	0	18933000	14396000	4536900	9156600	3013700	6142900	0	0	0	22897	3037	21680	142595;142596	192894;192895	192894			2	
HSLALGSATEDK	1	Unmodified	1227.6095	0.60953025	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	19.85	19.129	2	5.6013E-05	16362	160511_QHF_FH_JSI10i_2	108.7	71.221			1.1424	1.0957	209.46	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1424	1.0957	209.46	2	2	Median	NaN	NaN	NaN	0	0	Median	80206000	51528000	28678000	23030000	9037600	13992000	17338000	17338000	0	30058000	15371000	14686000	9781400	9781400	0	22898	2925	21681	142597;142598;142599;142600;142601;142602;142603	192896;192897;192898;192899;192900;192901;192902	192901			7	
HSLASSEYPVR	0	Unmodified	1244.6149	0.61494998	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	20.727	19.919	2	1.3401E-05	16636	160511_QHF_FH_JSI12i_2	107.15	65.706			0.8033	0.83122	93.989	8	8	Median	1.6493	1.4081	155.64	2	2	Median	0.91682	1.1188	96.297	2	2	Median	0.70312	0.69806	78.968	2	2	Median	0.6441	0.70239	121.5	2	2	Median	252540000	128160000	124390000	42164000	16528000	25636000	42289000	20977000	21312000	95159000	49802000	45357000	72931000	40849000	32082000	22899	1739	21682	142604;142605;142606;142607;142608;142609;142610;142611	192903;192904;192905;192906;192907;192908;192909;192910	192904			8	
HSLDASQGTATGPR	0	Unmodified	1396.6695	0.66950474	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	11.613	10.125	2;3	3.5081E-06	8099	160511_QHF_FH_JSI11i_2	124.6	96.586			1.4339	1.4469	78.529	9	9	Median	1.116	0.95114	173.52	2	2	Median	0.9148	1.1259	83.434	2	2	Median	1.4339	1.4469	33.236	3	3	Median	0.81644	0.89044	91.902	2	2	Median	333180000	163040000	170130000	53788000	21557000	32231000	62473000	33275000	29198000	140250000	67397000	72849000	76668000	40812000	35856000	22900	122	21683	142612;142613;142614;142615;142616;142617;142618;142619;142620	192911;192912;192913;192914;192915;192916;192917;192918;192919;192920	192916			10	
HSLEEDEGSDFITENR	0	Unmodified	1876.8075	0.80751437	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.135	41.753	2	0.0018994	35752	160511_QHF_FH_JSI12i_2	67.153	55.94			0.3639	0.40449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3639	0.40449	NaN	1	1	Median	15650000	14158000	1492400	0	0	0	0	0	0	0	0	0	15650000	14158000	1492400	22901	5011	21684	142621	192921	192921			1	
HSLEEGLDMVNR	0	Unmodified	1398.6562	0.65616287	3253	Q7Z309	FAM122B	Protein FAM122B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	1	3		44.412	43.779	2;3	0.00017418	37494	160511_QHF_FH_JSI11i_2	98.249	68.505			1.222	1.1374	28.611	4	4	Median	1.4201	1.1956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2892	1.3032	33.913	3	3	Plateau	NaN	NaN	NaN	0	0	Median	155070000	69385000	85684000	22427000	7257400	15169000	0	0	0	132640000	62127000	70515000	0	0	0	22902	3253	21685	142622;142623;142624;142625;142626	192922;192923;192924;192925;192926	192923			5	
HSLESATR	0	Unmodified	899.44609	0.44609374	4501	Q9BWH6	RPAP1	RNA polymerase II-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.25	0.433		3	1							2	1		1	5.1682	4.8934	3	0.06115	2750	160511_QHF_FH_JSI9i_2	11.363	0.65286			1.6702	1.5599	14.189	4	0	Median	1.8693	1.591	0	2	0	Median	0.95366	1.1851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4923	1.5294	NaN	1	0	Median	631300000	288850000	342460000	167510000	63430000	104080000	176580000	104980000	71600000	0	0	0	287210000	120440000	166770000	22903	4501	21686	142627;142628;142629;142630	192927	192927			1	
HSLGITSMDYYYYLSLSGSYK	1	Unmodified	2447.1355	0.13551379	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.236	80.535	3	0.02257	45247	160513_QHF_FH_JSI10Kac_6	39.647	26.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57634000	0	57634000	0	0	0	57634000	0	57634000	0	0	0	0	0	0	22904	2332	21687	142631	192928	192928			1	
HSLLQTLYK	1	Unmodified	1101.6182	0.61824444	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		2	5						1	2	3	2	1	48.679	46.722	2	1.7868E-05	39347	160511_QHF_FH_JSI10i_3	120.31	75.911			2.7756	3.1283	111.72	8	8	Median	1.2533	1.0472	198.06	2	2	Median	2.4627	3.0121	127.1	3	3	Median	2.1825	2.123	60.174	2	2	Median	3.6915	3.8078	NaN	1	1	Median	877090000	320950000	556140000	63930000	16663000	47266000	205370000	94705000	110670000	294700000	123080000	171620000	313080000	86496000	226590000	22905	1578	21688	142632;142633;142634;142635;142636;142637;142638;142639	192929;192930;192931;192932;192933;192934;192935;192936	192931			8	
HSLLQTLYKV	1	Unmodified	1200.6867	0.68665836	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	1	2	63.151	62.415	2	1.5374E-07	52576	160511_QHF_FH_JSI10i_3	119.68	107.63			0.88715	0.84943	115.83	6	4	Median	0.94907	0.76566	NaN	1	0	Median	1.7282	2.0195	107.8	2	1	Median	0.25853	0.24388	NaN	1	1	Median	0.75087	0.76431	156.88	2	2	Median	850160000	483760000	366400000	96533000	47591000	48941000	173120000	91984000	81133000	194830000	128780000	66050000	385680000	215400000	170270000	22906	1578	21689	142640;142641;142642;142643;142644;142645	192937;192938;192939;192940;192941;192942;192943;192944;192945	192939			9	
HSLNSSSASTTEPDFQK	1	Unmodified	1834.8333	0.83333519	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	5.67		15	10				2	7	1	8	8	10	9	27.922	24.784	2;3	9.3795E-48	21236	160511_QHF_FH_JSI11i_3	250.89	210.18			0.98078	0.97526	116.22	32	32	Median	1.0612	0.92037	119.16	8	8	Median	1.9871	2.3706	115.81	7	7	Median	0.98078	0.97526	131.08	8	8	Median	0.4678	0.49738	119.1	9	9	Median	5049100000	2627700000	2421400000	779370000	404030000	375340000	986400000	541770000	444630000	1728800000	836020000	892770000	1554500000	845860000	708650000	22907	1544	21690	142646;142647;142648;142649;142650;142651;142652;142653;142654;142655;142656;142657;142658;142659;142660;142661;142662;142663;142664;142665;142666;142667;142668;142669;142670;142671;142672;142673;142674;142675;142676;142677;142678;142679;142680	192946;192947;192948;192949;192950;192951;192952;192953;192954;192955;192956;192957;192958;192959;192960;192961;192962;192963;192964;192965;192966;192967;192968;192969;192970;192971;192972;192973;192974;192975;192976;192977;192978;192979;192980;192981;192982;192983;192984;192985;192986;192987;192988;192989	192949			44	
HSLPNSR	0	Unmodified	809.4144	0.41439968	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	5.4139	-2.1369	2	0.009774	1726	160513_QHF_FH_JSI10Kac_6	84.244	52.13			0.86411	0.87753	33.125	4	2	Median	0.86078	0.74024	NaN	1	0	Median	0.86746	1.0403	NaN	1	0	Median	0.61737	0.60213	NaN	1	1	Median	1.1529	1.2576	NaN	1	1	Median	32283000	15464000	16819000	12197000	5608600	6588800	9097800	5090100	4007700	5743900	2696700	3047200	5244100	2068700	3175400	22908	2759	21691	142681;142682;142683;142684	192990;192991;192992;192993	192993			4	
HSLPSGLGLSETQITSHGFDNTK	1	Unmodified	2425.1874	0.18736644	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	61.558	61.278	3	8.5602E-50	52751	160511_QHF_FH_JSI12i_3	240.71	232.35			0.6027	0.64432	51.74	5	5	Median	NaN	NaN	NaN	0	0	Median	0.52595	0.64432	NaN	1	1	Median	0.87955	0.81166	73.482	2	2	Median	0.95948	0.97718	64.235	2	2	Median	336980000	169330000	167640000	0	0	0	33224000	23741000	9482800	157290000	75421000	81864000	146470000	70171000	76296000	22909	1796	21692	142685;142686;142687;142688;142689	192994;192995;192996;192997;192998	192998			5	
HSLSGRPLK	1	Unmodified	993.57196	0.57196295	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			8.5391	7.9679	3	0.004185	5762	160511_QHF_FH_JSI9i_3	57.108	40.437			1.3929	1.3186	9.5834	2	2	Median	1.7677	1.411	NaN	1	1	Median	1.0975	1.2322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	293690000	157150000	136540000	161610000	78869000	82744000	132070000	78281000	53793000	0	0	0	0	0	0	22910	1765	21693	142690;142691	192999;193000	193000			2	
HSLSGSSPGMK	1	Unmodified	1086.5128	0.51279309	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	9.167	8.8982	2	1.1098E-05	6653	160511_QHF_FH_JSI11i_3	109.44	88.74			4.4694	4.0585	180.34	9	9	Median	1.5283	1.2926	196.38	2	2	Median	1.07	1.3274	207.34	2	2	Median	4.4694	4.0585	203.31	3	3	Median	1.015	1.0733	308.49	2	2	Median	404780000	160330000	244450000	68405000	22995000	45409000	77550000	33078000	44472000	121160000	43606000	77553000	137670000	60648000	77018000	22911	5474	21694	142692;142693;142694;142695;142696;142697;142698;142699;142700;142701	193001;193002;193003;193004;193005;193006;193007;193008;193009;193010	193002			10	
HSLSGSSPGMKDIPR	1	Acetyl (K);Oxidation (M)	1625.7832	0.78315429	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	1	0	1	1	By MS/MS	By MS/MS		By MS/MS	15.3	0.471								4	2	2	2		2	35.705	26.328	3	0.00086412	14407	160513_QHF_FH_JSI12Kac_5	70.529	49.866			0.12684	0.12259	23.291	2	2	Median	0.17428	0.14454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.092312	0.10398	NaN	1	1	Median	16131000	13576000	2555500	3709300	3619700	89577	4316700	1981300	2335400	0	0	0	8105200	7974700	130500	22912	5474	21695	142702;142703;142704;142705;142706;142707	193011;193012;193013;193014;193015;193016	193012	3438	2668	6	
HSLSGSSPGMKDIPR	1	Acetyl (K)	1609.7882	0.78823967	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5		1	2	3	45.685	36.146	3	0.00027132	20017	160513_QHF_FH_JSI10Kac_6	103.14	88.45			2.8364	3.0101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8364	3.0101	NaN	1	1	Median	44511000	29393000	15117000	0	0	0	13293000	13293000	0	13950000	7357200	6592600	17268000	8743200	8524900	22913	5474	21695	142708;142709;142710;142711;142712;142713	193017;193018;193019;193020;193021;193022;193023	193023	3438		7	
HSMDLSYALETVLNK	1	Unmodified	1719.8502	0.85017123	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		96.045	95.737	3	0.019855	84047	160511_QHF_FH_JSI11i_2	37.657	25.865			1.2227	1.201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2227	1.201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12953000	6884400	6068100	0	0	0	0	0	0	12953000	6884400	6068100	0	0	0	22914	5553	21696	142714	193024	193024			1	
HSMLFIEASAK	1	Unmodified	1232.6223	0.62234354	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	55.808	46.493	2	1.2996E-13	25627	160513_QHF_FH_JSI10Kac_6	151.15	126.93			1.9776	2.0673	99.035	5	5	Median	NaN	NaN	NaN	0	0	Median	0.9366	1.1023	111.48	2	2	Median	4.9911	4.8857	NaN	1	1	Median	1.011	1.0692	93.246	2	2	Median	75579000	35162000	40417000	0	0	0	49330000	26674000	22656000	12404000	1798200	10606000	13844000	6689900	7154200	22915	4884	21697	142715;142716;142717;142718;142719	193025;193026;193027;193028;193029	193029			5	
HSMNILNR	0	Unmodified	983.49708	0.49708345	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			21.859	20.611	2	0.0018755	16670	160511_QHF_FH_JSI9i_3	95.909	75.389			2.8964	2.3943	262.09	2	2	Median	2.8964	2.3943	262.09	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246870000	86143000	160730000	218500000	86143000	132360000	28370000	0	28370000	0	0	0	0	0	0	22916	5017;5423	21698	142720;142721;142722	193030;193031;193032	193032			3	
HSNLMLEDLDK	1	Unmodified	1313.6286	0.62855113	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.462	46.949	2	0.0081932	40413	160511_QHF_FH_JSI11i_2	59.84	22.648			1.5803	1.5709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5803	1.5709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25976000	8429400	17547000	0	0	0	0	0	0	25976000	8429400	17547000	0	0	0	22917	988	21699	142723	193033	193033			1	
HSNVNLTIFTAR	0	Unmodified	1371.7259	0.72589741	4966	Q9NRW3;Q96AK3	APOBEC3C;APOBEC3D	DNA dC->dU-editing enzyme APOBEC-3C;DNA dC->dU-editing enzyme APOBEC-3D	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	4	5	3	2	59.164	52.523	2;3	1.7818E-07	28814	160513_QHF_FH_JSI10Kac_6	138.24	99.686			0.75274	0.67403	85.386	12	11	Median	0.53216	0.44542	34.826	3	3	Median	0.35384	0.41299	90.157	5	5	Median	1.3433	1.268	34.628	2	1	Median	1.8872	2.0503	56.188	2	2	Median	448150000	255390000	192760000	75794000	46300000	29494000	259150000	175120000	84023000	70902000	22498000	48405000	42311000	11472000	30840000	22918	4966	21700	142724;142725;142726;142727;142728;142729;142730;142731;142732;142733;142734;142735;142736;142737	193034;193035;193036;193037;193038;193039;193040;193041;193042;193043;193044;193045;193046;193047;193048	193047			15	
HSPAGSQALQTTAASELMSQK	1	Unmodified	2142.0375	0.037531078	3180	Q6ZNB6	NFXL1	NF-X1-type zinc finger protein NFXL1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	51.996	51.716	3	4.8698E-06	45749	160511_QHF_FH_JSI11i_3	88.036	72.093			0.92492	0.88221	23.128	5	4	Median	NaN	NaN	NaN	0	0	Median	0.6585	0.80484	NaN	1	0	Median	0.86529	0.79069	22.91	2	2	Median	1.0716	1.0562	25.45	2	2	Median	195900000	103230000	92672000	0	0	0	32526000	17481000	15046000	98752000	51734000	47018000	64625000	34016000	30609000	22919	3180	21701	142738;142739;142740;142741;142742	193049;193050;193051;193052;193053;193054	193051			6	
HSPDTAEGQLK	1	Unmodified	1181.5677	0.56766543	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		9.8414	9.3253	2	0.00066753	6804	160511_QHF_FH_JSI11i_2	73.985	44.898			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9900600	0	9900600	9900600	0	9900600	0	0	0	0	0	0	0	0	0	22920	3136	21702	142743;142744	193055;193056	193056			2	
HSPEDPEK	1	Unmodified	937.41412	0.4141249	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.64	5	3					3			2	3	3	3	5.3329	2.8157	2	0.00024184	2685	160511_QHF_FH_JSI11i_1	117.04	87.463			0.92183	1.0178	14.173	11	0	Median	1.2372	1.0344	5.0929	2	0	Median	0.86628	1.0178	21.271	3	0	Median	0.9086	0.88608	11.47	3	0	Median	0.90274	0.99119	6.1136	3	0	Plateau	2207100000	1156200000	1050900000	437880000	208510000	229370000	487360000	272000000	215360000	678560000	364270000	314290000	603260000	311400000	291860000	22921	2094	21703	142745;142746;142747;142748;142749;142750;142751;142752;142753;142754;142755	193057;193058;193059;193060;193061;193062;193063;193064;193065;193066;193067;193068;193069;193070;193071;193072	193057			16	
HSPLTQMGPAK	1	Unmodified	1165.5914	0.59137776	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	20.917	20.543	2	0.0024558	16666	160511_QHF_FH_JSI12i_3	72.325	64.143			0.9517	0.95253	51.741	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4623	1.4163	75.257	2	2	Median	0.87164	0.92441	23.391	2	2	Median	298440000	118650000	179800000	0	0	0	0	0	0	167040000	58042000	109000000	131410000	60606000	70801000	22922	5528	21704	142756;142757;142758;142759;142760	193073;193074;193075;193076;193077	193077			5	
HSPMVAK	1	Unmodified	768.39524	0.39524414	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		8	2						4	4	4	2	4	6.5731	4.2808	2	0.0031378	2614	160513_QHF_FH_JSI9Kac_6	97.071	79.304			2.4144	2.6684	139.17	14	14	Median	5.1164	4.2627	169.21	4	4	Median	2.4085	2.8375	119.5	4	4	Median	1.5196	1.5395	189.81	2	2	Median	0.77142	0.84971	145.49	4	4	Median	4962900000	2054000000	2908800000	723410000	246000000	477410000	1354200000	646100000	708080000	1720300000	621840000	1098500000	1165000000	540090000	624900000	22923	1242	21705	142761;142762;142763;142764;142765;142766;142767;142768;142769;142770;142771;142772;142773;142774	193078;193079;193080;193081;193082;193083;193084;193085;193086;193087;193088;193089;193090;193091;193092	193089			15	
HSPSHPVGPK	1	Unmodified	1041.5356	0.53557744	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.2187	5.3142	3	0.0049139	2799	160511_QHF_FH_JSI12i_3	48.981	33.319			0.518	0.52958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.518	0.52958	NaN	1	1	Median	69453000	45926000	23528000	0	0	0	0	0	0	0	0	0	69453000	45926000	23528000	22924	5464	21706	142775	193093	193093			1	
HSPSIHQSVVAVSR	0	Unmodified	1502.7954	0.79537396	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				33.246	24.369	3	0.0065928	13371	160513_QHF_FH_JSI9Kac_6	33.265	20.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22925	1435	21707	142776	193094	193094			1	
HSPTLVPTATKPDAVQPDSLPYPQYLAVIK	2	Unmodified	3245.7336	0.73361514	5099	Q9NX70	MED29	Mediator of RNA polymerase II transcription subunit 29	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	90.224	90.158	4	1.9531E-09	78245	160511_QHF_FH_JSI12i_3	64.779	57.309			0.99626	0.99862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99626	0.99862	NaN	1	0	Median	54589000	29925000	24664000	0	0	0	0	0	0	0	0	0	54589000	29925000	24664000	22926	5099	21708	142777	193095;193096;193097	193095			3	
HSPTPQQSNR	0	Unmodified	1150.5479	0.54793304	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.5555	4.3614	2	0.0033721	2078	160511_QHF_FH_JSI11i_2	59.245	34.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22927	3463	21709	142778	193098	193098			1	
HSQAVEELAEQLEQTK	1	Unmodified	1838.901	0.90102082	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.492		13	9							3	5	6	8	68.367	67.764	2;3	2.8211E-35	58917	160511_QHF_FH_JSI12i_2	159.22	138.43			0.37977	0.32793	224	10	8	Median	0.42102	0.35955	210.93	3	1	Median	18.695	22.786	NaN	1	1	Median	0.1811	0.18354	29.54	3	3	Median	3.3341	3.7097	279.53	3	3	Median	1942500000	1129500000	813070000	262390000	106310000	156080000	268560000	67469000	201100000	564720000	478060000	86659000	846870000	477630000	369240000	22928	1436	21710	142779;142780;142781;142782;142783;142784;142785;142786;142787;142788;142789;142790;142791;142792;142793;142794;142795;142796;142797;142798;142799;142800	193099;193100;193101;193102;193103;193104;193105;193106;193107;193108;193109;193110;193111;193112;193113;193114;193115;193116;193117;193118;193119;193120;193121;193122;193123	193106			23	
HSQDLAFLSMLNDIAAVPATAMPFR	0	Unmodified	2715.3513	0.35127742	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	103.2	103.12	3	1.0072E-28	90846	160511_QHF_FH_JSI11i_2	158.67	155.86			1.0533	1.1184	26.328	9	1	Median	1.1135	0.96039	40.958	2	0	Median	1.1686	1.3794	9.3951	2	0	Median	1.1496	1.1223	0.4956	2	0	Median	0.74698	0.81661	19.909	3	1	Median	1006800000	468870000	537930000	197620000	86922000	110700000	204040000	91756000	112290000	315710000	142440000	173270000	289430000	147750000	141670000	22929	1650	21711	142801;142802;142803;142804;142805;142806;142807;142808;142809;142810;142811	193124;193125;193126;193127;193128;193129;193130;193131;193132;193133;193134;193135;193136;193137;193138;193139	193132			15	
HSQEELLQR	0	Unmodified	1138.5731	0.57308516	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	15.078	14.485	2	2.763E-06	11479	160511_QHF_FH_JSI11i_2	138.98	82.853			1.0712	1.1928	49.841	7	6	Median	1.2394	1.064	89.189	2	2	Median	0.69266	0.85387	70.113	2	2	Median	1.0412	1.0618	33.031	2	2	Median	1.0712	1.1928	NaN	1	0	Median	377480000	189340000	188140000	81799000	36330000	45468000	85580000	45931000	39649000	154740000	80201000	74535000	55361000	26877000	28484000	22930	3100	21712	142812;142813;142814;142815;142816;142817;142818	193140;193141;193142;193143;193144;193145;193146;193147	193145			8	
HSQELPAILDDTTLSGSDR	0	Unmodified	2053.9916	0.99162674	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		68.974	68.375	3	0.0071754	59850	160511_QHF_FH_JSI11i_2	49.559	44.657			0.8444	0.84403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8444	0.84403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53486000	28803000	24683000	0	0	0	0	0	0	53486000	28803000	24683000	0	0	0	22931	2605	21713	142819	193148	193148			0	
HSQFIGYPITLFVEK	1	Unmodified	1777.9403	0.94030686	880;2871	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.94		23	10						11	15	9	10	10	93.616	90.936	2;3	1.9079E-62	43368	160513_QHF_FH_JSI11Kac_6	226.88	210.94			0.86688	0.89487	46.815	38	12	Median	0.85644	0.71437	43.833	11	6	Median	0.78088	0.93383	36.073	8	1	Median	0.94146	0.95826	51.887	9	2	Median	0.90468	0.95873	56.699	10	3	Median	17066000000	8437400000	8628300000	3145400000	1456800000	1688700000	3625800000	2046800000	1579000000	4911900000	2353000000	2558900000	5382500000	2580800000	2801700000	22932	880;2871	21714	142820;142821;142822;142823;142824;142825;142826;142827;142828;142829;142830;142831;142832;142833;142834;142835;142836;142837;142838;142839;142840;142841;142842;142843;142844;142845;142846;142847;142848;142849;142850;142851;142852;142853;142854;142855;142856;142857;142858;142859;142860;142861;142862;142863	193149;193150;193151;193152;193153;193154;193155;193156;193157;193158;193159;193160;193161;193162;193163;193164;193165;193166;193167;193168;193169;193170;193171;193172;193173;193174;193175;193176;193177;193178;193179;193180;193181;193182;193183;193184;193185;193186;193187;193188;193189;193190;193191;193192;193193;193194;193195;193196;193197;193198;193199;193200;193201;193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212;193213;193214;193215;193216;193217;193218;193219;193220;193221;193222;193223;193224;193225;193226;193227;193228;193229;193230;193231;193232;193233;193234;193235;193236;193237;193238;193239;193240;193241;193242;193243;193244;193245;193246;193247;193248;193249;193250;193251;193252;193253;193254;193255;193256;193257;193258;193259;193260;193261;193262;193263;193264;193265;193266;193267;193268;193269;193270;193271;193272;193273;193274;193275;193276;193277;193278;193279;193280;193281;193282;193283;193284;193285;193286;193287;193288;193289;193290;193291;193292;193293;193294;193295;193296;193297;193298	193196			150	
HSQFLGYPITLYLEK	1	Unmodified	1807.9509	0.95087155	2870	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	6.07		17	10						10	8	8	9	12	89.195	86.409	2;3	6.0464E-98	78808	160511_QHF_FH_JSI11i_2	260.85	0			1.4734	1.4514	48.688	34	10	Linear	1.0467	0.87363	55.438	7	2	Median	0.79289	0.97422	48.756	7	3	Median	0.93896	0.90495	60.211	9	1	Median	0.84781	0.88567	39.218	11	4	Median	45188000000	23486000000	21702000000	9414200000	4069000000	5345200000	14417000000	7878900000	6538100000	11392000000	5987800000	5403800000	9964800000	5549900000	4414800000	22933	2870	21715	142864;142865;142866;142867;142868;142869;142870;142871;142872;142873;142874;142875;142876;142877;142878;142879;142880;142881;142882;142883;142884;142885;142886;142887;142888;142889;142890;142891;142892;142893;142894;142895;142896;142897;142898;142899;142900	193299;193300;193301;193302;193303;193304;193305;193306;193307;193308;193309;193310;193311;193312;193313;193314;193315;193316;193317;193318;193319;193320;193321;193322;193323;193324;193325;193326;193327;193328;193329;193330;193331;193332;193333;193334;193335;193336;193337;193338;193339;193340;193341;193342;193343;193344;193345;193346;193347;193348;193349;193350;193351;193352;193353;193354;193355;193356;193357;193358;193359;193360;193361;193362;193363;193364;193365;193366;193367;193368;193369;193370;193371;193372;193373;193374;193375;193376;193377;193378;193379;193380;193381;193382;193383;193384;193385;193386;193387;193388;193389;193390;193391;193392;193393;193394;193395;193396;193397;193398;193399;193400;193401;193402;193403;193404;193405;193406;193407;193408;193409;193410;193411;193412;193413;193414;193415;193416;193417;193418;193419;193420;193421;193422;193423;193424	193370			126	
HSQPIPK	1	Unmodified	805.44464	0.44463717	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.06		7	1					1		4	2	1	2	6.3798	4.787	2	0.0091276	3607	160511_QHF_FH_JSI12i_2	84.244	68.804			1.2255	1.1484	110.84	8	7	Median	1.6172	1.3748	100.82	3	3	Median	1.1286	1.3908	211.19	2	2	Median	0.92864	0.95923	NaN	1	0	Median	0.85984	0.95116	139.08	2	2	Median	4310000000	2065600000	2244500000	899550000	382290000	517260000	1051000000	467230000	583800000	1238400000	620540000	617830000	1121100000	595510000	525580000	22934	157	21716	142901;142902;142903;142904;142905;142906;142907;142908;142909	193425;193426;193427;193428;193429;193430;193431;193432;193433;193434	193425			10	
HSSGIVADLSEQSLK	1	Unmodified	1569.7999	0.79985021	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	51.411	50.452	2;3	1.6548E-06	43421	160511_QHF_FH_JSI11i_2	127.17	105.18			0.86158	0.9006	20.21	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8328	0.84076	8.1778	2	2	Median	0.99262	1.0752	23.522	2	2	Median	134910000	70022000	64891000	0	0	0	0	0	0	100780000	51234000	49543000	34135000	18787000	15348000	22935	2673	21717	142910;142911;142912;142913	193435;193436;193437;193438	193437			4	
HSSLAGCQIINYR	0	Unmodified	1517.7409	0.74089555	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.29	4.8		8	4						2	4	5	5		41.63	39.412	2;3	8.422E-06	34634	160511_QHF_FH_JSI10i_2	101.89	91.339			0.68615	0.75357	44.285	12	10	Median	0.873	0.7479	30.283	3	2	Median	0.61164	0.72182	32.643	4	3	Median	0.74765	0.75928	63.868	5	5	Median	NaN	NaN	NaN	0	0	Median	543800000	269340000	274470000	84213000	37278000	46936000	241150000	119250000	121900000	218440000	112810000	105630000	0	0	0	22936	2155	21718	142914;142915;142916;142917;142918;142919;142920;142921;142922;142923;142924;142925;142926;142927	193439;193440;193441;193442;193443;193444;193445;193446;193447;193448;193449;193450;193451;193452;193453	193450			15	
HSSLITPLQAVAQR	0	Unmodified	1519.8471	0.84707518	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		8	9							6	6	4	1	57.932	56.922	2;3	1.9363E-10	47602	160511_QHF_FH_JSI10i_3	115.57	111.94			1.0327	0.97604	39.467	14	11	Median	1.2252	1.0294	50.574	6	4	Median	0.68134	0.80205	36.032	6	5	Median	1.0598	1.0679	11.862	2	2	Median	NaN	NaN	NaN	0	0	Median	864550000	465760000	398790000	401120000	185990000	215130000	390320000	227550000	162770000	61596000	40705000	20891000	11511000	11511000	0	22937	2094	21719	142928;142929;142930;142931;142932;142933;142934;142935;142936;142937;142938;142939;142940;142941;142942;142943;142944	193454;193455;193456;193457;193458;193459;193460;193461;193462;193463;193464;193465;193466;193467;193468;193469;193470;193471;193472;193473	193456			20	
HSSLITPLQAVAQRDPIIAK	1	Unmodified	2157.227	0.22698683	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			77.634	76.229	3;4	0.0014276	63812	160511_QHF_FH_JSI10i_3	43.534	40.04			0.95535	1.1017	67.333	3	1	Plateau	0.9567	0.7879	NaN	1	0	Median	1.5361	1.7821	68.02	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90517000	43978000	46539000	35525000	20083000	15442000	54992000	23895000	31097000	0	0	0	0	0	0	22938	2094	21720	142945;142946;142947	193474;193475;193476	193475			3	
HSSVYPTQEELEAVQNMVSHTER	0	Unmodified	2670.2344	0.23439299	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.412		18	5							5	1	7	10	81.45	80.726	3;4	2.0925E-48	68783	160511_QHF_FH_JSI12i_3	208.46	206.63			1.1916	1.1408	29.47	17	4	Median	1.8521	1.6019	23.57	4	1	Median	1.1916	1.466	NaN	1	0	Median	1.1805	1.0883	23.406	5	1	Median	1.017	1.0037	33.091	7	2	Median	1229800000	571830000	658000000	148910000	57029000	91883000	46094000	16919000	29174000	365190000	173560000	191630000	669630000	324320000	345320000	22939	2325	21721	142948;142949;142950;142951;142952;142953;142954;142955;142956;142957;142958;142959;142960;142961;142962;142963;142964;142965;142966;142967;142968;142969;142970	193477;193478;193479;193480;193481;193482;193483;193484;193485;193486;193487;193488;193489;193490;193491;193492;193493;193494;193495;193496;193497;193498;193499;193500;193501;193502;193503	193500			27	
HSTENDSPTNVQQ	0	Unmodified	1455.6226	0.62261413	1652	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.255	8.8895	2	3.0776E-10	6767	160511_QHF_FH_JSI12i_1	146.11	145.62			1.051	1.06	35.034	4	1	Median	1.9976	1.6414	NaN	1	1	Median	0.70855	0.83094	NaN	1	0	Median	1.3894	1.3522	NaN	1	0	Median	0.79504	0.81904	NaN	1	0	Median	279460000	147720000	131750000	47140000	19021000	28119000	93013000	57365000	35648000	74492000	29742000	44750000	64820000	41589000	23231000	22940	1652	21722	142971;142972;142973;142974	193504;193505;193506;193507;193508	193506			5	
HSTLDFMLGAK	1	Unmodified	1218.6067	0.60669348	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.97		9	3						4	4	4	5	3	61.514	59.255	2;3	9.8368E-10	51078	160511_QHF_FH_JSI12i_2	136.63	121.37			0.79271	0.70476	64.458	13	11	Median	0.84348	0.7202	55.677	3	2	Median	0.57683	0.68837	53.102	4	4	Median	0.44987	0.45188	97.039	3	3	Median	0.87077	0.99318	81.369	3	2	Median	1481500000	813210000	668310000	189550000	89259000	100290000	459920000	281750000	178180000	496340000	260160000	236180000	335700000	182040000	153660000	22941	1784	21723	142975;142976;142977;142978;142979;142980;142981;142982;142983;142984;142985;142986;142987;142988;142989;142990	193509;193510;193511;193512;193513;193514;193515;193516;193517;193518;193519;193520;193521;193522;193523;193524;193525;193526;193527;193528;193529	193510			21	
HSTLVNDAYK	1	Unmodified	1146.5669	0.56693715	3424	Q8IWL3	HSCB	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.008	16.973	2	0.025942	13859	160511_QHF_FH_JSI12i_2	42.109	17.954			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22942	3424	21724	142991	193530	193530			1	
HSTPHAAFQPNSQIGEEMSQNSFIK	1	Unmodified	2784.2926	0.29257657	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.728	61.728	4	6.3751E-12	54875	160511_QHF_FH_JSI11i_3	97.5	90.625			0.91082	0.85911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91082	0.85911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57681000	26476000	31205000	0	0	0	0	0	0	57681000	26476000	31205000	0	0	0	22943	5380	21725	142992	193531;193532	193532			2	
HSTSPSLDSEYNEELNEDDSQSDEK	1	Unmodified	2854.1537	0.15367887	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		40.881	40.518	3	1.1261E-13	36532	160511_QHF_FH_JSI11i_1	109.41	109.25			0.64323	0.67045	17.245	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52182	0.59348	NaN	1	1	Median	0.7929	0.7574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57126000	30077000	27048000	0	0	0	24239000	17121000	7118000	32886000	12956000	19930000	0	0	0	22944	1430	21726	142993;142994	193533;193534;193535;193536;193537;193538	193536			6	
HSTSVSSLAER	0	Unmodified	1172.5786	0.57856447	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.034	13.117	2	0.011141	10118	160511_QHF_FH_JSI12i_3	56.258	34.127			2.5824	2.6574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5824	2.6574	NaN	1	1	Median	16913000	3170500	13742000	0	0	0	0	0	0	0	0	0	16913000	3170500	13742000	22945	4653	21727	142995	193539	193539			1	
HSTVFDNLPNPEDRK	1	Unmodified	1767.854	0.85401105	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	1			By MS/MS		3	0			1									1		44.59	44.59	3	9.7892E-05	39390	160511_QHF_FH_JSI11i_3	66.965	62.649		+	0.63737	0.60432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63737	0.60432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106870000	59437000	47429000	0	0	0	0	0	0	106870000	59437000	47429000	0	0	0	22946	66	21728	142996	193540	193540			1	
HSTVQHSYS	0	Unmodified	1044.4625	0.46247208	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	5.1292	4.7376	2	0.00081194	2671	160511_QHF_FH_JSI12i_2	73.665	49.896			0.86703	0.94286	17.054	4	0	Median	1.3918	1.1717	NaN	1	0	Median	0.71079	0.88228	NaN	1	0	Median	1.0353	1.0076	NaN	1	0	Median	0.72611	0.78931	NaN	1	0	Median	364010000	173010000	191000000	72731000	32208000	40523000	60048000	33700000	26348000	147920000	70007000	77916000	83304000	37091000	46213000	22947	2493	21729	142997;142998;142999;143000	193541	193541			1	
HSVATAADLELK	1	Unmodified	1253.6616	0.66156582	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	36.177	35.447	2;3	2.326E-10	30952	160511_QHF_FH_JSI10i_2	127.87	108.77			0.3782	0.38807	39.947	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5244	0.53126	44.414	2	2	Median	0.31162	0.34642	NaN	1	1	Median	170870000	109640000	61226000	0	0	0	0	0	0	142870000	91714000	51152000	28002000	17928000	10074000	22948	2997	21730	143001;143002;143003;143004;143005	193542;193543;193544;193545;193546	193546			5	
HSVAVMTVR	0	Unmodified	998.53313	0.5331346	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			22.848	18.372	2	1.2322E-05	10856	160513_QHF_FH_JSI10Kac_6	110.87	68.407			0.26614	0.31879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26614	0.31879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24670000	22312000	2357800	0	0	0	24670000	22312000	2357800	0	0	0	0	0	0	22949	4382	21731	143006;143007	193547;193548	193548			2	
HSVDELQK	1	Unmodified	954.47706	0.47705951	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	9.7847	9.3178	2	0.0010359	7153	160511_QHF_FH_JSI10i_2	114.28	75.49			1.36	1.2613	211.51	8	8	Median	1.4735	1.2774	196.07	2	2	Median	1.0547	1.2965	319.8	2	2	Median	0.81938	0.8257	254.2	2	2	Median	1.6822	1.9083	317.49	2	2	Median	557890000	312000000	245900000	108840000	58257000	50581000	124070000	77557000	46508000	188340000	111310000	77027000	136650000	64868000	71781000	22950	8	21732	143008;143009;143010;143011;143012;143013;143014;143015	193549;193550;193551;193552;193553;193554;193555;193556	193555			8	
HSVDLIGRPFGSK	1	Unmodified	1411.7572	0.75719754	4078	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		43.124	42.08	3	0.0038041	34797	160511_QHF_FH_JSI9i_3	55.899	48.731			0.46269	0.54462	31.553	3	3	Median	0.79838	0.65938	NaN	1	1	Median	0.46269	0.54462	NaN	1	1	Median	0.37144	0.35598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111680000	70737000	40944000	40993000	18958000	22035000	16277000	9950800	6325900	54411000	41828000	12583000	0	0	0	22951	4078	21733	143016;143017;143018	193557;193558;193559	193559			3	
HSVGVVIGR	0	Unmodified	922.53485	0.53484916	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		6	6						4	5	4	4	3	21.304	18.86	2	3.676E-11	10772	160513_QHF_FH_JSI9Kac_6	155	79.807			1.0108	0.85958	152.35	16	16	Median	1.9107	1.5952	138.4	5	5	Median	0.93089	1.1064	168.47	4	4	Median	1.0006	1.0181	185.55	4	4	Median	0.25207	0.27472	189.09	3	3	Median	2673700000	1269100000	1404600000	721880000	294300000	427570000	661970000	348740000	313230000	621230000	296180000	325040000	668600000	329850000	338750000	22952	3911	21734	143019;143020;143021;143022;143023;143024;143025;143026;143027;143028;143029;143030;143031;143032;143033;143034	193560;193561;193562;193563;193564;193565;193566;193567;193568;193569;193570;193571;193572;193573;193574;193575	193571			16	
HSVLGAAVSVGVPQGVSLK	1	Unmodified	1804.0207	0.020682448	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.646	70.348	3	0.017989	60860	160511_QHF_FH_JSI12i_3	33.918	24.381			0.72314	0.72682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72314	0.72682	NaN	1	1	Median	88162000	47271000	40891000	0	0	0	0	0	0	0	0	0	88162000	47271000	40891000	22953	5032	21735	143035	193576	193576			1	
HSVMMTFLSNMLR	0	Unmodified	1565.7517	0.75165993	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	89.456	82.401	2;3	6.0009E-06	46900	160513_QHF_FH_JSI10Kac_6	108.37	75.766			0.14473	0.16232	232.53	4	4	Median	0.12709	0.10846	NaN	1	1	Median	0.11388	0.13428	259.94	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	303920000	222800000	81116000	20977000	19557000	1419300	265120000	185420000	79697000	0	0	0	17821000	17821000	0	22954	5234	21736	143036;143037;143038;143039;143040;143041	193577;193578;193579;193580;193581;193582	193580			6	
HSVNNPYSQFQDEYSLDEVMASK	1	Unmodified	2687.181	0.18096043	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	77.492	76.629	3	6.2918E-07	68084	160511_QHF_FH_JSI10i_2	67.979	59.254			1.2357	1.5091	48.786	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2357	1.5091	NaN	1	1	Median	2.8322	2.8879	NaN	1	1	Median	0.99584	1.1108	NaN	1	0	Median	81980000	23024000	58956000	0	0	0	25069000	7988500	17081000	28108000	2797800	25310000	28803000	12237000	16565000	22955	1207	21737	143042;143043;143044;143045	193583;193584;193585;193586	193586			4	
HSVSEMASNK	1	Unmodified	1088.4921	0.49205765	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	7.5813	7.1677	2	0.0026371	4854	160511_QHF_FH_JSI11i_2	72.643	46.906			7.9465	7.1649	26.03	3	3	Median	7.9465	6.835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.989	10.964	NaN	1	1	Median	6.5956	7.1649	NaN	1	1	Median	139660000	13235000	126420000	38158000	4515000	33643000	0	0	0	45261000	3285200	41976000	56240000	5434800	50805000	22956	2273	21738	143046;143047;143048	193587;193588;193589	193589			3	
HSWKRLKDIRK	3	Acetyl (K)	1507.8736	0.8735647	504	O75342	ALOX12B	Arachidonate 12-lipoxygenase, 12R-type	yes	yes	1	0	0	4	By MS/MS		By matching	By MS/MS	16	0									3	1		1	1	96.914	87.609	3	0.026013	49960	160513_QHF_FH_JSI9Kac_6	33.89	14.286			0.42133	0.40516	25.661	3	0	Plateau	0.31448	0.27186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.42133	0.40516	NaN	1	0	Median	0.40829	0.43894	NaN	1	0	Median	259490000	168490000	90997000	45887000	30000000	15887000	0	0	0	121920000	72044000	49876000	91682000	66448000	25234000	22957	504	21739	143049;143050;143051	193590	193590	251		0	
HSYPPGAILVFLPGLAEIK	1	Unmodified	2021.135	0.13498392	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.072	86.63	3	0.0032347	47158	160513_QHF_FH_JSI12Kac_6	57.989	48.735			0.59022	0.64147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59022	0.64147	NaN	1	1	Median	59671000	41393000	18278000	0	0	0	0	0	0	0	0	0	59671000	41393000	18278000	22958	3087	21740	143052	193591	193591			1	
HTAAPTDPADGPV	0	Unmodified	1247.5782	0.57823012	2225	Q04941	PLP2	Proteolipid protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.73	8	6	3		4	3	6			4	10	9	7	29.669	24.972	2	8.2965E-25	14530	160513_QHF_FH_JSI12Kac_3	164.96	149.29			0.9329	1.0176	75.595	26	20	Median	2.3087	1.8694	133.21	3	3	Median	1.0487	1.2474	57.573	8	6	Median	0.77815	0.77861	79.476	8	6	Median	0.8444	0.906	75.514	7	5	Median	15422000000	8173400000	7248700000	3393800000	1779300000	1614600000	2293900000	1238500000	1055400000	4028200000	1840500000	2187700000	5706100000	3315000000	2391000000	22959	2225	21741	143053;143054;143055;143056;143057;143058;143059;143060;143061;143062;143063;143064;143065;143066;143067;143068;143069;143070;143071;143072;143073;143074;143075;143076;143077;143078;143079;143080;143081;143082	193592;193593;193594;193595;193596;193597;193598;193599;193600;193601;193602;193603;193604;193605;193606;193607;193608;193609;193610;193611;193612;193613;193614;193615;193616;193617;193618;193619;193620;193621;193622;193623;193624	193617			33	
HTAEEYAALLTK	1	Unmodified	1345.6878	0.68778057	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								2		1	2	50.683	49.599	2	1.0713E-05	42774	160511_QHF_FH_JSI11i_2	125.72	91.854			0.72833	0.6304	75.497	5	3	Median	1.1492	1.0055	66.021	2	1	Median	NaN	NaN	NaN	0	0	Median	0.35687	0.35787	NaN	1	1	Median	0.92042	1.0137	99.171	2	1	Median	234930000	126140000	108780000	64819000	32284000	32536000	0	0	0	72801000	50035000	22766000	97305000	43824000	53480000	22960	4844	21742	143083;143084;143085;143086;143087	193625;193626;193627;193628	193628			4	
HTAEEYAALLTKHTR	1	Acetyl (K)	1781.906	0.90604662	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.038	52.33	3	0.0049074	28362	160513_QHF_FH_JSI11Kac_6	58.814	48.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4345500	4345500	0	0	0	0	0	0	0	4345500	4345500	0	0	0	0	22961	4844	21743	143088	193629	193629	3248		1	
HTAFIGDRN	0	Unmodified	1029.4992	0.49919194	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	13.414	13.487	2	0.001521	10443	160511_QHF_FH_JSI12i_3	84.743	49.387			1.2984	1.3606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2984	1.3606	NaN	1	1	Median	46939000	16366000	30573000	0	0	0	0	0	0	0	0	0	46939000	16366000	30573000	22962	4821	21744	143089;143090	193630;193631	193631			2	
HTALSLISVILK	1	Unmodified	1293.802	0.80202247	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	99.304	99.102	3	0.001095	84300	160511_QHF_FH_JSI12i_3	57.019	41.48			0.21274	0.23597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21274	0.23597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2629200	2211000	418220	0	0	0	2629200	2211000	418220	0	0	0	0	0	0	22963	405	21745	143091;143092	193632;193633	193633			2	
HTAMVSWGGVSIPNSPFR	0	Unmodified	1941.952	0.95195096	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.61		3	8						9	6	6	3	5	82.216	78.03	2;3	5.0167E-240	40992	160513_QHF_FH_JSI10Kac_6	341.59	300.88			1.0691	1.1031	44.405	20	9	Median	1.6133	1.3492	37.846	6	3	Median	0.88531	1.0936	18.289	6	3	Median	1.1188	1.0944	20.04	3	0	Median	0.75289	0.78161	81.427	5	3	Median	3063300000	1370300000	1693000000	787450000	251510000	535940000	1610900000	830170000	780730000	451180000	205270000	245910000	213760000	83295000	130470000	22964	1192	21746	143093;143094;143095;143096;143097;143098;143099;143100;143101;143102;143103;143104;143105;143106;143107;143108;143109;143110;143111;143112	193634;193635;193636;193637;193638;193639;193640;193641;193642;193643;193644;193645;193646;193647;193648;193649;193650;193651;193652;193653;193654;193655;193656;193657;193658;193659	193657			25	
HTAMVSWGGVSIPNSPFR	0	Oxidation (M)	1957.9469	0.94686558	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0	By MS/MS	By MS/MS			11.7	6.13			1						2	1	2			77.233	72.716	2;3	7.6529E-44	38965	160513_QHF_FH_JSI10Kac_6	185.95	164.72			0.76763	1.1215	13.526	3	0	Plateau	1.3597	1.1215	NaN	1	0	Median	0.88713	1.0409	18.133	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	242250000	118260000	123990000	32082000	17413000	14669000	210170000	100850000	109320000	0	0	0	0	0	0	22965	1192	21746	143113;143114;143115	193660;193661;193662	193661		817	2	
HTAQIEIVR	0	Unmodified	1065.5931	0.59309232	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	23.323	22.471	2	0.0042772	18528	160511_QHF_FH_JSI11i_2	67.704	46.24			0.13486	0.13736	166.51	3	3	Plateau	0.17165	0.1478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13486	0.13736	NaN	1	1	Median	2.3341	2.5467	NaN	1	1	Median	81730000	59360000	22370000	19889000	17610000	2279000	0	0	0	40385000	35790000	4594900	21456000	5959300	15496000	22966	2549	21747	143116;143117;143118	193663;193664;193665	193665			3	
HTDAAEEVLLEK	1	Unmodified	1353.6776	0.67760981	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		41.096	40.629	2	0.0036729	34703	160511_QHF_FH_JSI11i_2	57.293	42.626			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22967	3075	21748	143119;143120	193666;193667	193666			2	
HTDEEFLK	1	Unmodified	1017.4767	0.47672516	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	20.598	19.83	2	0.014866	16121	160511_QHF_FH_JSI11i_2	60.436	39.916			2.1216	2.6258	134.59	3	3	Median	NaN	NaN	NaN	0	0	Median	2.1216	2.6258	NaN	1	1	Median	2.7386	2.8495	NaN	1	1	Median	0.24552	0.26612	NaN	1	1	Median	88449000	38150000	50299000	0	0	0	19205000	4264500	14940000	36518000	10742000	25776000	32726000	23143000	9582900	22968	4627	21749	143121;143122;143123	193668;193669;193670	193669			3	
HTDNVIQWLNAMDEIGLPK	1	Unmodified	2193.0888	0.088838367	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	1	2	2	100.73	99.079	3	9.871E-09	87554	160511_QHF_FH_JSI12i_2	110.77	102.48			1.0982	1.2514	57.692	6	2	Median	1.0539	0.92959	NaN	1	0	Median	1.0281	1.2786	NaN	1	0	Median	1.1339	1.1124	13.621	2	1	Median	2.1472	2.3976	88.732	2	1	Median	1119000000	513210000	605830000	100860000	48379000	52478000	217500000	110830000	106670000	496040000	223340000	272700000	304640000	130660000	173970000	22969	1600	21750	143124;143125;143126;143127;143128;143129	193671;193672;193673;193674;193675;193676;193677	193672			7	
HTDPVPDPR	0	Unmodified	1032.4989	0.49885759	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.11		4	2				1			2	3	1	1	13.805	11.648	2	3.1742E-05	9950	160511_QHF_FH_JSI9i_2	101.64	68.803			1.0641	1.0338	18.526	6	0	Median	1.3547	1.1377	25.455	2	0	Median	1.0253	1.226	27.812	2	0	Median	1.0167	1.0228	NaN	1	0	Median	0.94	1.0448	NaN	1	0	Median	733150000	333380000	399770000	169480000	76296000	93183000	155250000	73730000	81524000	234920000	96935000	137990000	173500000	86418000	87079000	22970	1103	21751	143130;143131;143132;143133;143134;143135;143136	193678;193679;193680;193681;193682;193683;193684;193685;193686;193687;193688;193689;193690;193691;193692	193686			15	
HTDVQFYTEVGEITTDLGK	1	Unmodified	2152.0324	0.032428925	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.957	88.004	3	6.9991E-05	75964	160511_QHF_FH_JSI12i_2	58.848	49.802			1.1504	1.2583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1504	1.2583	NaN	1	0	Median	18347000	8579100	9768100	0	0	0	0	0	0	0	0	0	18347000	8579100	9768100	22971	5658	21752	143137	193693	193693			1	
HTEMITTLK	1	Unmodified	1072.5587	0.55868065	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		27.114	26.933	2	0.0013128	23186	160511_QHF_FH_JSI11i_3	69.598	53.936			2.7509	2.7109	149.16	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7509	2.7109	149.16	2	1	Median	NaN	NaN	NaN	0	0	Median	111490000	19873000	91619000	0	0	0	0	0	0	111490000	19873000	91619000	0	0	0	22972	532	21753	143138;143139	193694;193695	193694			2	
HTENTFSR	0	Unmodified	990.45191	0.45190739	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.9602	5.7647	2	0.061211	3554	160511_QHF_FH_JSI11i_2	34.808	21.229			1.1048	1.1124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1048	1.1124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24376000	10081000	14294000	0	0	0	0	0	0	24376000	10081000	14294000	0	0	0	22973	2233	21754	143140	193696	193696			1	
HTFEEAEK	1	Unmodified	989.44543	0.44542503	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		8.1716	7.9745	2	0.0032389	5578	160511_QHF_FH_JSI11i_2	80.165	66.586			2.614	2.5992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.614	2.5992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32068000	6967600	25100000	0	0	0	0	0	0	32068000	6967600	25100000	0	0	0	22974	1535	21755	143141;143142	193697;193698	193698			2	
HTFGLVQSK	1	Unmodified	1015.5451	0.5450795	3148	Q6UW68	TMEM205	Transmembrane protein 205	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	22.623	22.613	2	0.0029556	18558	160511_QHF_FH_JSI12i_3	72.325	40.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43478000	0	43478000	0	0	0	0	0	0	0	0	0	43478000	0	43478000	22975	3148	21756	143143	193699	193699			1	
HTFSGVASVESSSGEAFHVGK	1	Unmodified	2118.997	0.99704647	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	2	2	5	6	54.093	50.57	2;3;4	6.6952E-56	43436	160511_QHF_FH_JSI12i_3	179.56	166.57		+	1.0205	1.1666	103.97	11	10	Median	0.30831	0.26308	NaN	1	0	Median	0.67364	0.77043	58.68	2	2	Median	1.3632	1.3274	115.97	5	5	Median	1.9002	1.9715	127.28	3	3	Median	3416100000	1825000000	1591100000	21489000	16894000	4594300	108030000	66796000	41237000	1027100000	524260000	502840000	2259500000	1217100000	1042500000	22976	55	21757	143144;143145;143146;143147;143148;143149;143150;143151;143152;143153;143154;143155;143156;143157;143158	193700;193701;193702;193703;193704;193705;193706;193707;193708;193709;193710;193711;193712;193713;193714;193715;193716;193717;193718	193717			19	
HTFVVFFR	0	Unmodified	1051.5603	0.56033563	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	2	2	4	4	70.508	61.377	2;3	1.8804E-23	33497	160513_QHF_FH_JSI10Kac_6	180.7	150.04			1.5738	1.5968	70.196	10	9	Median	2.0112	1.7194	NaN	1	1	Median	1.0379	1.2488	61.469	2	1	Median	1.5551	1.483	95.341	3	3	Median	0.97908	1.0747	82.456	4	4	Median	1200200000	722150000	478030000	150820000	71923000	78896000	618860000	434370000	184490000	232000000	120590000	111420000	198500000	95265000	103230000	22977	4530	21758	143159;143160;143161;143162;143163;143164;143165;143166;143167;143168;143169;143170	193719;193720;193721;193722;193723;193724;193725;193726;193727;193728;193729;193730;193731	193730			13	
HTGAVLK	1	Unmodified	724.42317	0.42317345	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	6.1076	5.7574	2	0.0077716	3635	160511_QHF_FH_JSI9i_2	88.029	88.029			9.7875	9.6799	334.58	9	9	Median	0.96506	0.81508	349.95	2	2	Median	0.40084	0.49389	452.31	2	2	Median	1.122	1.1562	471.06	2	2	Median	0.80192	0.88883	388.96	3	3	Plateau	4839700000	2013400000	2826400000	746960000	299270000	447680000	1042200000	530470000	511710000	1909100000	627820000	1281300000	1141500000	555800000	585690000	22978	816	21759	143171;143172;143173;143174;143175;143176;143177;143178;143179	193732;193733;193734;193735;193736;193737;193738;193739;193740	193734			9	
HTGIHGSTFSSTTLGPIFWLLVK	1	Unmodified	2498.3322	0.33218018	3599	Q8NBN7	RDH13	Retinol dehydrogenase 13	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			95.036	89.315	3;4	5.2082E-12	51467	160513_QHF_FH_JSI10Kac_6	100.67	92.867			0.88335	1.0421	23.743	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88335	1.0421	23.743	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217610000	116850000	100750000	0	0	0	217610000	116850000	100750000	0	0	0	0	0	0	22979	3599	21760	143180;143181	193741;193742;193743	193742			3	
HTGPGILSMANAGPNTNGSQFFICTAK	1	Oxidation (M)	2806.3167	0.31668283	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.97		5	6						4	4	4	4	3	72.51	69.564	3	3.5871E-99	37286	160513_QHF_FH_JSI10Kac_6	222.21	209.99			1.0119	1.0411	34.609	14	3	Median	1.5174	1.1966	22.708	3	0	Median	0.9528	1.1036	15.412	4	1	Median	0.73636	0.69785	40.768	4	2	Median	1.1686	1.2341	8.2231	3	0	Median	2249400000	1205600000	1043900000	691230000	318050000	373190000	872570000	495190000	377380000	436120000	256940000	179180000	249530000	135390000	114140000	22980	2040	21761	143182;143183;143184;143185;143186;143187;143188;143189;143190;143191;143192;143193;143194;143195;143196	193744;193745;193746;193747;193748;193749;193750;193751;193752;193753;193754;193755;193756;193757;193758;193759;193760;193761;193762;193763;193764;193765;193766;193767;193768;193769;193770;193771;193772;193773;193774;193775;193776	193775		1704	33	
HTGPGILSMANAGPNTNGSQFFICTAK	1	Unmodified	2790.3218	0.3217682	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.24	2	5	15						5	6	11	7	3	82.053	79.977	2;3;4	7.3316E-117	40701	160513_QHF_FH_JSI10Kac_6	243.35	237.19			0.84804	0.86876	45.678	25	11	Median	1.1883	0.99233	27.717	6	2	Median	0.71504	0.82136	50.001	10	5	Median	0.67994	0.64738	37.988	6	3	Median	1.2789	1.4301	41.275	3	1	Median	9244200000	4691100000	4553100000	2749900000	1183100000	1566800000	3909800000	2080000000	1829800000	1922400000	1177000000	745370000	662180000	250970000	411210000	22981	2040	21761	143197;143198;143199;143200;143201;143202;143203;143204;143205;143206;143207;143208;143209;143210;143211;143212;143213;143214;143215;143216;143217;143218;143219;143220;143221;143222;143223	193777;193778;193779;193780;193781;193782;193783;193784;193785;193786;193787;193788;193789;193790;193791;193792;193793;193794;193795;193796;193797;193798;193799;193800;193801;193802;193803;193804;193805;193806;193807;193808;193809;193810;193811;193812;193813;193814;193815;193816;193817;193818;193819;193820;193821;193822;193823;193824;193825;193826;193827;193828;193829;193830;193831;193832;193833;193834;193835;193836;193837	193835			61	
HTGPGLLSMANQGQNTNNSQFVITLK	1	Unmodified	2769.3868	0.3868113	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			82.178	80.876	3	2.1156E-12	66514	160511_QHF_FH_JSI9i_3	83.701	77.268			0.81203	0.95858	50.167	3	3	Median	0.99513	0.83006	69.967	2	2	Median	0.81203	0.95858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48102000	23009000	25094000	32466000	17404000	15062000	15636000	5604400	10032000	0	0	0	0	0	0	22982	1685	21762	143224;143225;143226	193838;193839;193840;193841	193840			4	
HTGPITCLQFNPK	1	Unmodified	1511.7555	0.75548298	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	46.845	46.724	2	0.00011909	39946	160511_QHF_FH_JSI12i_3	110.39	94.134			3.1262	3.0978	16.129	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9022	2.7639	NaN	1	1	Median	3.3674	3.4721	NaN	1	1	Median	49899000	11762000	38137000	0	0	0	0	0	0	26016000	4182400	21833000	23884000	7579400	16304000	22983	3159	21763	143227;143228;143229	193842;193843;193844	193843			3	
HTGPNSPDTANDGFVR	0	Unmodified	1683.7601	0.76011066	1383;1864	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.72	4	16	12				1	6	4	8	11	13	11	24.969	22.065	2;3	2.1155E-40	18368	160511_QHF_FH_JSI12i_3	213.67	200.55			0.98991	1.0149	25.84	39	11	Median	1.3055	1.0947	28.353	8	2	Median	0.82886	0.98188	29.428	10	2	Median	1.1948	1.1529	23.722	11	5	Median	0.9202	0.98284	14.263	10	2	Median	9523900000	4619300000	4904500000	2055800000	971210000	1084600000	1631100000	847300000	783750000	3268300000	1497000000	1771300000	2568700000	1303800000	1264900000	22984	1383;1864	21764	143230;143231;143232;143233;143234;143235;143236;143237;143238;143239;143240;143241;143242;143243;143244;143245;143246;143247;143248;143249;143250;143251;143252;143253;143254;143255;143256;143257;143258;143259;143260;143261;143262;143263;143264;143265;143266;143267;143268;143269;143270;143271;143272	193845;193846;193847;193848;193849;193850;193851;193852;193853;193854;193855;193856;193857;193858;193859;193860;193861;193862;193863;193864;193865;193866;193867;193868;193869;193870;193871;193872;193873;193874;193875;193876;193877;193878;193879;193880;193881;193882;193883;193884;193885;193886;193887;193888;193889;193890;193891;193892;193893;193894;193895;193896;193897;193898;193899;193900;193901;193902;193903;193904;193905;193906;193907;193908;193909;193910;193911	193904			66	
HTGQIGGLK	1	Unmodified	909.50321	0.50321468	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		10.686	10.485	2	0.007111	8566	160511_QHF_FH_JSI10i_2	54.776	33.476			0.5838	0.58472	386.74	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5838	0.58472	386.74	2	2	Median	NaN	NaN	NaN	0	0	Median	85298000	26422000	58875000	0	0	0	0	0	0	85298000	26422000	58875000	0	0	0	22985	4495	21765	143273;143274;143275	193912;193913;193914	193914			3	
HTGYVGLK	1	Unmodified	873.47085	0.47085192	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	14.866	14.298	2	0.017839	11221	160511_QHF_FH_JSI11i_2	58.286	38.649			1.8172	1.9575	9.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0584	2.0865	NaN	1	1	Median	1.6043	1.8364	NaN	1	1	Median	108890000	40948000	67945000	0	0	0	0	0	0	61765000	23150000	38615000	47129000	17799000	29330000	22986	3922	21766	143276;143277	193915;193916	193916			2	
HTGYVIELQHVVK	1	Unmodified	1521.8304	0.83036248	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.62		3	1						7	3	3	3	2	56.192	49.46	3	1.7919E-07	26650	160513_QHF_FH_JSI10Kac_6	133.71	119.63			0.56687	0.62763	126.86	10	10	Median	0.65695	0.56772	89.627	3	3	Plateau	0.55548	0.68322	121.29	3	3	Median	0.36177	0.35457	68.754	2	2	Median	1.145	1.2128	279.51	2	2	Median	543900000	293040000	250860000	229360000	125630000	103730000	176850000	87606000	89249000	75798000	49521000	26278000	61890000	30282000	31609000	22987	1609	21767	143278;143279;143280;143281;143282;143283;143284;143285;143286;143287;143288	193917;193918;193919;193920;193921;193922;193923;193924;193925;193926;193927	193927			11	
HTHVQDGEAGGITQQIGATNVPLEAINEQTK	1	Unmodified	3255.612	0.61199645	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.102	69.804	4	9.1207E-05	60480	160511_QHF_FH_JSI12i_3	46.464	40.623			1.0806	1.1032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0806	1.1032	NaN	1	1	Median	16062000	4423700	11638000	0	0	0	0	0	0	0	0	0	16062000	4423700	11638000	22988	454	21768	143289	193928	193928			1	
HTIALWQFLSAHK	1	Unmodified	1550.8358	0.83578221	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	80.378	72.494	3	0.00010116	40244	160513_QHF_FH_JSI10Kac_6	83.53	69.501			1.571	1.7069	59.218	6	4	Median	1.2365	1.0399	84.19	2	2	Median	2.2289	2.6403	38.655	2	1	Median	1.4415	1.3833	NaN	1	0	Median	1.4232	1.5448	NaN	1	1	Median	2158500000	903750000	1254700000	421740000	238500000	183250000	1566400000	594070000	972310000	109080000	46298000	62780000	61259000	24884000	36375000	22989	3009	21769	143290;143291;143292;143293;143294;143295	193929;193930;193931;193932;193933;193934	193933			6	
HTIAVVWGGVNIPHSPYR	0	Unmodified	2002.0537	0.053713911	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			73.418	66.046	3;4	0.00013096	36266	160513_QHF_FH_JSI10Kac_6	122.57	112.37			2.1577	2.5166	61.255	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1577	2.5166	61.255	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	437700000	149150000	288550000	0	0	0	437700000	149150000	288550000	0	0	0	0	0	0	22990	512	21770	143296;143297	193935;193936	193935			2	
HTIIPAK	1	Unmodified	778.47012	0.47012364	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.902	12.689	2	0.040857	9930	160511_QHF_FH_JSI11i_2	49.358	49.358			0.74332	0.7561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74332	0.7561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	323660000	227910000	95746000	0	0	0	0	0	0	323660000	227910000	95746000	0	0	0	22991	5161	21771	143298	193937	193937			1	
HTILADIVISAAGIPNLITADMIK	1	Unmodified	2489.3927	0.39273153	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	104.17	104.18	3	0.0068629	90858	160511_QHF_FH_JSI12i_3	32.391	24.103			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22992	1047	21772	143299	193938	193938			1	
HTKHLGN	1	Acetyl (K)	847.43005	0.43004974	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		7.1061	-2.2581	2	0.05468	2358	160513_QHF_FH_JSI11Kac_6	63.565	56.655			0.047861	0.046276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.047861	0.046276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22158000	21299000	859410	0	0	0	0	0	0	22158000	21299000	859410	0	0	0	22993	4905	21773	143300	193939	193939			1	
HTKPVIHSK	2	Acetyl (K)	1087.6138	0.61382777	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	12.578	5.494	3	0.026772	4519	160513_QHF_FH_JSI12Kac_6	38.783	17.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22994	3849	21774	143301	193940	193940	2958		1	
HTLADNFNPVSEER	0	Unmodified	1627.759	0.75904803	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.54		8	3					1		3	2	3	4	48.755	47.174	2;3	9.8847E-53	40406	160511_QHF_FH_JSI12i_2	224.24	210.33			1.0509	1.0279	16.308	12	1	Median	1.2126	1.0362	1.88	3	0	Plateau	0.70238	0.86022	7.4875	2	0	Median	1.0958	1.1007	21.105	3	0	Median	1.0027	1.0616	15.763	4	1	Median	1675100000	787070000	888050000	259640000	102570000	157070000	341230000	197140000	144090000	570440000	226620000	343820000	503810000	260740000	243070000	22995	1178	21775	143302;143303;143304;143305;143306;143307;143308;143309;143310;143311;143312;143313	193941;193942;193943;193944;193945;193946;193947;193948;193949;193950;193951;193952;193953;193954;193955;193956;193957;193958;193959	193944			18	
HTLAYDK	1	Unmodified	846.42357	0.42356738	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			9.0549	8.5802	2	0.020341	6695	160511_QHF_FH_JSI10i_2	60.76	7.2056			0.32597	0.3958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32597	0.3958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259430000	124300000	135130000	0	0	0	259430000	124300000	135130000	0	0	0	0	0	0	22996	3101	21776	143314	193960	193960			1	
HTLDELNPQK	1	Unmodified	1193.6041	0.60405094	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.76		3					2	5	1	1	3	4	3	47.049	39.206	2;3	0.00087218	18397	160511_QHF_FH_JSI11i_2	82.287	63.507			0.97377	1.0352	58.059	10	2	Median	1.8613	1.6276	NaN	1	1	Median	0.74276	0.87371	15.373	3	0	Median	1.1135	1.0632	99.709	3	1	Median	0.93066	1.0195	12.293	3	0	Median	195290000	99709000	95579000	13446000	4430800	9015100	31630000	18867000	12763000	96664000	47739000	48925000	53548000	28672000	24875000	22997	2356	21777	143315;143316;143317;143318;143319;143320;143321;143322;143323;143324;143325	193961;193962;193963;193964;193965;193966	193962			6	
HTLDQYVESDYTLLYLHHGLTSDNKPSLSWLR	1	Unmodified	3800.8798	0.87983846	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.901	79.233	5	3.1455E-10	44302	160513_QHF_FH_JSI10Kac_6	85.412	70.708			1.3783	1.6332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3783	1.6332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127950000	56093000	71853000	0	0	0	127950000	56093000	71853000	0	0	0	0	0	0	22998	2261	21778	143326	193967	193967			1	
HTLGENIADMGGLK	1	Unmodified	1454.7188	0.71876312	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6								3	5	4	53.256	52.763	2;3	7.1083E-05	46672	160511_QHF_FH_JSI11i_3	147.71	134.61			0.81128	0.81214	59.786	12	9	Median	NaN	NaN	NaN	0	0	Median	1.4395	1.7905	49.793	3	2	Median	0.82163	0.81926	51.469	5	4	Median	0.67914	0.68326	76.183	4	3	Median	700230000	350670000	349570000	0	0	0	117130000	56410000	60724000	246290000	127840000	118450000	336810000	166420000	170390000	22999	714	21779	143327;143328;143329;143330;143331;143332;143333;143334;143335;143336;143337;143338	193968;193969;193970;193971;193972;193973;193974;193975;193976;193977;193978;193979;193980	193969			13	
HTLGENIADNGGLK	1	Unmodified	1437.7212	0.72120596	1550	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	32.158	32.08	2	0.0011726	27076	160511_QHF_FH_JSI12i_3	79.283	61.815			4.131	4.2666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.131	4.2666	NaN	1	1	Median	25352000	3726300	21626000	0	0	0	0	0	0	0	0	0	25352000	3726300	21626000	23000	1550	21780	143339;143340	193981;193982	193982			2	
HTLGQQEVEVDGLTAYVAGTK	1	Unmodified	2215.1121	0.11207623	5551	Q9Y303	AMDHD2	Putative N-acetylglucosamine-6-phosphate deacetylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.137	69.844	3	8.4921E-05	60268	160511_QHF_FH_JSI12i_2	59.356	55.636			0.79173	0.84686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79173	0.84686	NaN	1	1	Median	26037000	17870000	8167000	0	0	0	0	0	0	0	0	0	26037000	17870000	8167000	23001	5551	21781	143341	193983	193983			1	
HTLGSVEK	1	Unmodified	869.46068	0.46068117	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	4.9701	5.0163	3	0.057476	3035	160511_QHF_FH_JSI11i_3	12.047	0.45353			2.6923	2.6266	136.88	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0585	0.99781	NaN	1	0	Median	6.8474	6.9142	NaN	1	0	Median	302030000	93006000	209030000	0	0	0	0	0	0	162240000	70470000	91767000	139800000	22536000	117260000	23002	2836	21782	143342;143343	193984	193984			1	
HTLLSLVR	0	Unmodified	937.5709	0.57090032	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				46.823	45.213	2	0.022919	37002	160511_QHF_FH_JSI9i_3	54.611	43.542			2.8152	2.3	NaN	1	1	Median	2.8152	2.3	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37540000	15132000	22408000	37540000	15132000	22408000	0	0	0	0	0	0	0	0	0	23003	2947	21783	143344	193985	193985			1	
HTLNPEETSSVVR	0	Unmodified	1467.7318	0.73177065	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.551	26.191	2	0.00041033	21963	160511_QHF_FH_JSI11i_2	84.17	64.383			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23004	2925	21784	143345	193986	193986			1	
HTLNQIDSVK	1	Unmodified	1153.6091	0.60913632	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.53		12	4					4	1	6	4	6	5	21.968	19.228	2;3	1.5891E-06	16186	160511_QHF_FH_JSI12i_2	131.82	77.662		+	0.32069	0.30406	235.69	20	20	Median	1.2698	1.0821	233.95	6	6	Median	0.60166	0.74174	255.79	4	4	Median	0.57389	0.5562	261.72	6	6	Median	0.17397	0.1849	269.99	4	4	Median	3142400000	1653900000	1488500000	508380000	192480000	315890000	756060000	418420000	337640000	1160400000	631450000	528930000	717570000	411570000	306000000	23005	55	21785	143346;143347;143348;143349;143350;143351;143352;143353;143354;143355;143356;143357;143358;143359;143360;143361;143362;143363;143364;143365;143366	193987;193988;193989;193990;193991;193992;193993;193994;193995;193996;193997;193998;193999;194000;194001;194002;194003;194004;194005;194006;194007;194008	193989			22	
HTLQLQGLDSGFVPSVQDFDK	1	Unmodified	2330.1543	0.1542754	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		90.518	90.066	3	5.8007E-05	79898	160511_QHF_FH_JSI10i_2	61.361	53.822			0.82788	0.764	63.894	4	3	Median	0.58865	0.5022	NaN	1	1	Median	0.75408	0.92906	91.345	2	2	Median	1.1643	1.1623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	202560000	115180000	87374000	34362000	24210000	10153000	111580000	68572000	43003000	56620000	22402000	34218000	0	0	0	23006	4248	21786	143367;143368;143369;143370	194009;194010;194011;194012;194013	194011			5	
HTLQQHQETPK	1	Unmodified	1345.6739	0.67386184	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	5.5332	5.4883	2;3	5.057E-18	3050	160511_QHF_FH_JSI12i_3	160.18	119.83			0.59915	0.62565	32.427	5	1	Median	0.59915	0.50757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0112	0.96202	6.3504	2	0	Median	0.53148	0.5645	14.546	2	0	Median	1014200000	586010000	428170000	40857000	21876000	18982000	0	0	0	351050000	185190000	165850000	622270000	378940000	243330000	23007	3264	21787	143371;143372;143373;143374;143375	194014;194015;194016;194017;194018;194019;194020;194021	194020			8	
HTLSYVDVGTGK	1	Unmodified	1275.6459	0.64591575	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	6.29		11	2					2	4	5	3	6	5	35.725	31.834	2;3	1.4668E-38	27370	160511_QHF_FH_JSI11i_2	179.57	126.25			2.1941	2.1381	137.26	16	14	Median	4.1381	3.5281	161.26	4	4	Median	1.9195	2.2137	143.82	3	3	Median	3.1527	3.114	108.8	5	4	Median	0.79418	0.82912	167.87	4	3	Median	3070900000	1078800000	1992100000	563860000	200920000	362940000	845830000	360880000	484950000	1232700000	294870000	937810000	428520000	222130000	206390000	23008	1367	21788	143376;143377;143378;143379;143380;143381;143382;143383;143384;143385;143386;143387;143388;143389;143390;143391;143392;143393;143394	194022;194023;194024;194025;194026;194027;194028;194029;194030;194031;194032;194033;194034;194035;194036;194037;194038;194039;194040;194041;194042;194043;194044	194035			23	
HTLTQIK	1	Unmodified	839.4865	0.48650199	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.76		7	1						5	3	3	4	3	12.614	9.3138	2	0.0032652	5739	160513_QHF_FH_JSI11Kac_6	97.798	10.476			6.0718	6.2577	232.61	12	12	Median	0.72996	0.62304	340.8	2	2	Median	1.0138	1.2238	227.36	3	3	Plateau	1.0921	1.0775	238.65	4	4	Median	5.1385	5.646	299.71	3	3	Median	8818000000	4074800000	4743100000	1687900000	955320000	732610000	2465700000	1257900000	1207800000	3101800000	1176300000	1925500000	1562500000	685340000	877180000	23009	1494	21789	143395;143396;143397;143398;143399;143400;143401;143402;143403;143404;143405;143406;143407	194045;194046;194047;194048;194049;194050;194051;194052;194053;194054;194055;194056;194057	194046			13	
HTLTQIKDAVR	1	Acetyl (K)	1322.7306	0.73064844	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	1	2	4	51.797	42.305	2;3	1.8418E-07	23025	160513_QHF_FH_JSI11Kac_6	115.18	45.075			1.3512	1.1358	172.32	6	4	Median	1.3512	1.1358	86.923	2	1	Median	14.104	16.747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21397	0.236	187.36	3	2	Plateau	63690000	32976000	30713000	14033000	5527500	8505300	10750000	471300	10278000	11540000	11540000	0	27367000	15438000	11930000	23010	1494	21790	143408;143409;143410;143411;143412;143413;143414;143415;143416	194058;194059;194060;194061;194062;194063;194064;194065	194058	1507		8	
HTMMFSATFPK	1	Oxidation (M)	1312.5944	0.59441423	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			4						16	4	3	5	8	53.505	46.048	2;3	4.2911E-07	25203	160513_QHF_FH_JSI11Kac_6	107.79	85.702			0.99795	1.0485	60.041	19	15	Median	0.96631	0.82737	67.66	4	2	Median	1.1386	1.3182	57.561	3	2	Median	0.42804	0.41371	41.843	4	4	Linear	1.0042	1.0535	68.159	8	7	Median	949580000	490280000	459300000	196760000	105000000	91760000	170530000	100080000	70445000	148390000	90752000	57638000	433910000	194450000	239460000	23011	154	21791	143417;143418;143419;143420;143421;143422;143423;143424;143425;143426;143427;143428;143429;143430;143431;143432;143433;143434;143435;143436	194066;194067;194068;194069;194070;194071;194072;194073;194074;194075;194076;194077;194078;194079;194080;194081;194082;194083;194084;194085;194086	194069		68;69	21	
HTMMFSATFPK	1	Unmodified	1296.5995	0.59949961	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		8	12						16	8	9	9	10	59.301	54.528	2;3	8.7449E-14	29700	160513_QHF_FH_JSI11Kac_6	155.15	136.41			0.54284	0.5645	150.71	34	34	Median	0.85701	0.71181	172.48	8	8	Median	1.321	1.5725	149.8	8	8	Median	0.47091	0.45464	150.56	8	8	Median	0.44627	0.49392	156.6	10	10	Median	6221900000	3064500000	3157400000	881510000	395850000	485660000	1261000000	627990000	632990000	1616600000	796730000	819820000	2462800000	1243900000	1218900000	23012	154	21791	143437;143438;143439;143440;143441;143442;143443;143444;143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460;143461;143462;143463;143464;143465;143466;143467;143468;143469;143470;143471;143472	194087;194088;194089;194090;194091;194092;194093;194094;194095;194096;194097;194098;194099;194100;194101;194102;194103;194104;194105;194106;194107;194108;194109;194110;194111;194112;194113;194114;194115;194116;194117;194118;194119;194120;194121;194122;194123	194098			37	
HTMMFSATFPK	1	2 Oxidation (M)	1328.5893	0.58932885	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	2	0	By MS/MS			By MS/MS	16	0									3	2			1	44.663	35.496	2;3	0.0044351	18903	160513_QHF_FH_JSI9Kac_6	51.998	48.054			1.0918	0.9401	22.016	2	1	Median	1.0918	0.9401	22.016	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17792000	8809000	8982600	17792000	8809000	8982600	0	0	0	0	0	0	0	0	0	23013	154	21791	143473;143474;143475	194124;194125;194126	194125		68;69	3	
HTNFVEFR	0	Unmodified	1048.509	0.50902834	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	30.203	29.838	2	0.0048454	25482	160511_QHF_FH_JSI11i_3	75.043	45.667			1.38	1.2225	83.057	3	3	Median	1.38	1.2225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1821	1.0972	NaN	1	1	Median	4.7903	4.8667	NaN	1	1	Median	151380000	55198000	96186000	36646000	13637000	23010000	0	0	0	73094000	37026000	36067000	41644000	4534800	37109000	23014	1809	21792	143476;143477;143478	194127;194128;194129	194127			3	
HTNPIVENGQTHPCQK	1	Unmodified	1858.8744	0.87442892	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.888	10.983	3	2.2673E-05	8295	160511_QHF_FH_JSI12i_3	95.767	83.849			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15189000	0	15189000	0	0	0	0	0	0	0	0	0	15189000	0	15189000	23015	5666	21793	143479	194130	194130			1	
HTPLPQQR	0	Unmodified	975.52501	0.52501276	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		8.403	8.403	2	0.0069479	6109	160511_QHF_FH_JSI11i_3	70.268	32.03			1.2368	1.1627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2368	1.1627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58182000	26450000	31731000	0	0	0	0	0	0	58182000	26450000	31731000	0	0	0	23016	5637	21794	143480	194131	194131			1	
HTQENCETWGVNGETGTLVDMK	1	Unmodified	2505.09	0.090036934	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61.027	60.114	3	2.8045E-05	51593	160511_QHF_FH_JSI12i_2	62.064	58.602			1.2127	1.3259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2127	1.3259	NaN	1	1	Median	29831000	22105000	7725600	0	0	0	0	0	0	17436000	17436000	0	12394000	4668500	7725600	23017	1655	21795	143481;143482	194132;194133	194132			2	
HTQPYTIYTNHLYVYPK	1	Unmodified	2137.0633	0.063275544	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		1		2	65.82	56.489	3	2.3115E-10	30957	160513_QHF_FH_JSI10Kac_6	163.41	154.15			0.72202	0.77608	23.384	3	3	Median	NaN	NaN	NaN	0	0	Median	0.5678	0.6762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84424	0.9099	22.497	2	2	Median	31704000	18497000	13207000	0	0	0	19423000	12600000	6823800	0	0	0	12280000	5896900	6383500	23018	4555	21796	143483;143484;143485	194134;194135;194136	194136			3	
HTQWGIDFLER	0	Unmodified	1400.6837	0.68369824	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		71.959	71.959	3	0.02777	64191	160511_QHF_FH_JSI11i_3	18.53	8.3421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23019	2934	21797	143486	194137	194137			1	
HTSALCNSCR	0	Unmodified	1204.5077	0.50772449	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			6.0479	5.5517	2	0.0019332	3660	160511_QHF_FH_JSI10i_3	75.294	69.928			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36257000	18174000	18082000	0	0	0	36257000	18174000	18082000	0	0	0	0	0	0	23020	5616	21798	143487;143488	194138;194139	194139			2	
HTSTLAAMK	1	Unmodified	958.4906	0.49060109	3521;3784	Q8N3U4;Q9UJ98;Q8WVM7	STAG2;STAG3;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-3;Cohesin subunit SA-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	4	2	12.218	11.841	2	0.00083343	9495	160511_QHF_FH_JSI10i_2	73.26	53.783			0.57734	0.59737	187.64	8	6	Median	0.23437	0.19738	133.3	2	1	Median	0.56148	0.7044	NaN	1	0	Median	0.32611	0.31978	229.8	4	4	Median	4.891	4.9152	NaN	1	1	Median	793790000	436260000	357530000	114860000	76302000	38560000	172680000	102720000	69964000	364350000	201990000	162360000	141900000	55252000	86644000	23021	3521;3784	21799	143489;143490;143491;143492;143493;143494;143495;143496;143497;143498;143499	194140;194141;194142;194143;194144;194145;194146;194147;194148;194149;194150	194148			11	
HTSYISGPWFDMYLSAR	0	Unmodified	2029.9356	0.93563219	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.375	78.75	2	1.8496E-22	43945	160513_QHF_FH_JSI10Kac_6	195.87	174.92			2.2616	2.7203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2616	2.7203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65152000	15413000	49739000	0	0	0	65152000	15413000	49739000	0	0	0	0	0	0	23022	1240	21800	143500	194151	194151			1	
HTTDLDASK	1	Unmodified	986.46689	0.46688876	1019	P12532	CKMT1A	Creatine kinase U-type, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	6.6677	6.1783	2	0.0088252	4054	160511_QHF_FH_JSI12i_2	60.828	49.06			5.2519	5.3725	17.416	2	2	Median	6.8521	6.0766	NaN	1	1	Median	4.0254	4.75	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54064000	3382100	50682000	15871000	1736400	14134000	17368000	1645800	15722000	0	0	0	20826000	0	20826000	23023	1019	21801	143501;143502;143503	194152;194153;194154	194152			3	
HTTSIFDDFAHYEK	1	Unmodified	1709.7686	0.76855009	3291;4548	Q7Z739;Q9BYJ9	YTHDF3;YTHDF1	YTH domain-containing family protein 3;YTH domain-containing family protein 1	no	no	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	66.054	65.124	3	0.00018736	56669	160511_QHF_FH_JSI11i_2	58.723	54.689			1.0682	1.1184	8.7235	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0549	1.0515	NaN	1	0	Median	1.0817	1.1896	NaN	1	0	Median	45695000	23221000	22474000	0	0	0	0	0	0	30871000	14870000	16000000	14824000	8350700	6473400	23024	3291;4548	21802	143504;143505	194155	194155			1	
HTTSIFDDFSHYEK	1	Unmodified	1725.7635	0.76346471	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	63.157	61.849	3	0.010763	53132	160511_QHF_FH_JSI12i_2	40.211	35.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23025	5654	21803	143506	194156	194156			1	
HTVDDGLDIR	0	Unmodified	1139.5571	0.55710075	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	27.517	27.153	2	0.0090062	22679	160511_QHF_FH_JSI12i_2	50.473	27.044			0.61764	0.62622	39.827	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61764	0.62622	39.827	2	2	Median	NaN	NaN	NaN	0	0	Median	52520000	29188000	23332000	0	0	0	0	0	0	52520000	29188000	23332000	0	0	0	23026	3343	21804	143507;143508;143509;143510	194157;194158;194159;194160	194157			4	
HTVDDGLDIRK	1	Unmodified	1267.6521	0.65206377	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	22.324	21.791	2;3	2.6215E-08	18469	160511_QHF_FH_JSI12i_2	101.35	75.233			0.82901	0.90834	44.167	8	4	Median	1.1444	0.97764	NaN	1	0	Median	0.83184	1.0117	10.547	2	1	Median	0.54098	0.52482	72.879	2	1	Median	0.66596	0.6852	40.201	3	2	Median	1385100000	706830000	678220000	194610000	76158000	118460000	334000000	174180000	159830000	335520000	172270000	163250000	520910000	284230000	236680000	23027	3343	21805	143511;143512;143513;143514;143515;143516;143517;143518	194161;194162;194163;194164;194165;194166;194167;194168;194169;194170	194162			10	
HTVEFNQVAMANSDGSEAMLNR	0	Unmodified	2420.0849	0.084891976	4167	Q96LI5	CNOT6L	CCR4-NOT transcription complex subunit 6-like	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	59.473	58.368	3	2.5626E-09	51689	160511_QHF_FH_JSI10i_2	92.29	81.301			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23028	4167	21806	143519;143520	194171;194172	194172			2	
HTVTMIPGDGIGPELMLHVK	1	Unmodified	2144.1122	0.11221635	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	84.184	83.597	3	3.2818E-05	73532	160511_QHF_FH_JSI11i_2	59.512	44.584			0.73977	0.69074	49.086	2	1	Median	0.55674	0.48817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98298	0.97736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47966000	28495000	19471000	17742000	12008000	5734100	0	0	0	30224000	16488000	13736000	0	0	0	23029	1738	21807	143521;143522;143523;143524;143525	194173;194174;194175;194176;194177;194178;194179	194176			7	
HTVYNIITNFMR	0	Unmodified	1507.7606	0.76056836	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			80.436	74.84	2;3	9.94E-08	41079	160513_QHF_FH_JSI10Kac_6	103.46	85.03			0.62066	0.70846	72.749	3	3	Median	NaN	NaN	NaN	0	0	Median	0.62066	0.70846	72.749	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299800000	173220000	126590000	0	0	0	299800000	173220000	126590000	0	0	0	0	0	0	23030	4258	21808	143526;143527;143528	194180;194181;194182	194182			3	
HVAAGTQQPYTDGVR	0	Unmodified	1598.7801	0.78011783	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.16		11	6						1	1	3	9	5	20.847	19.891	2;3	6.3584E-07	16205	160511_QHF_FH_JSI12i_3	92.039	74.922			0.41233	0.40721	156.34	9	9	Median	0.29701	0.26059	NaN	1	1	Median	1.2631	1.5521	NaN	1	1	Median	1.756	1.6082	217.87	3	3	Median	0.29179	0.30884	139.07	4	4	Median	627010000	366890000	260120000	17242000	16006000	1236300	127070000	79778000	47290000	328030000	152030000	176000000	154670000	119080000	35589000	23031	1065	21809	143529;143530;143531;143532;143533;143534;143535;143536;143537;143538;143539;143540;143541;143542;143543;143544;143545;143546	194183;194184;194185;194186;194187;194188;194189;194190;194191;194192;194193;194194;194195;194196;194197;194198;194199;194200	194199			18	
HVADGEDHA	0	Unmodified	949.38897	0.38897279	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	4.5889	4.0176	2	0.00011176	1990	160511_QHF_FH_JSI12i_2	110.63	105.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21684000	21684000	0	0	0	0	0	0	0	0	0	0	21684000	21684000	0	23032	984	21810	143547	194201	194201			1	
HVAEDLGK	1	Unmodified	867.44503	0.4450311	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.3		7						1		1	2	3	2	10.551	8.8104	2	0.0018455	7197	160511_QHF_FH_JSI11i_2	96.492	50.066			13.033	12.812	296.78	7	7	Median	NaN	NaN	NaN	0	0	Median	1.5362	1.8802	388.98	2	2	Median	13.033	12.812	290.56	3	3	Median	1.3126	1.4605	444.92	2	2	Median	1155200000	564610000	590540000	0	0	0	360990000	200710000	160280000	446390000	176090000	270300000	347780000	187820000	159960000	23033	1507	21811	143548;143549;143550;143551;143552;143553;143554;143555	194202;194203;194204;194205;194206;194207;194208;194209	194206			8	
HVAEVLEYTK	1	Unmodified	1187.6186	0.61863837	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.27		11	3						3	4	4	5	4	39.311	36.955	2;3	1.1755E-08	32175	160511_QHF_FH_JSI11i_2	178.22	157.32			5.7677	6.2087	302.16	14	14	Median	11.782	10.081	397.27	3	3	Median	1.0086	1.1577	297.58	4	4	Median	5.7298	5.947	306.93	5	5	Median	1.2001	1.3279	431.2	2	2	Median	1977300000	863300000	1114000000	313800000	138290000	175500000	520370000	251680000	268680000	666860000	255780000	411070000	476310000	217540000	258770000	23034	832	21812	143556;143557;143558;143559;143560;143561;143562;143563;143564;143565;143566;143567;143568;143569;143570;143571;143572	194210;194211;194212;194213;194214;194215;194216;194217;194218;194219;194220;194221;194222;194223;194224;194225;194226;194227;194228;194229;194230;194231;194232;194233;194234	194225			25	
HVAFSGLVGLEPATLAR	0	Unmodified	1736.9574	0.95735391	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		10	12							4	7	6	5	81.905	81.353	2;3	3.2464E-11	71761	160511_QHF_FH_JSI9i_2	136.81	112.88			2.2435	2.0767	139.17	17	17	Median	1.3703	1.1713	148.88	2	2	Median	2.6014	3.1371	164.47	5	5	Median	1.3761	1.3906	125.97	5	5	Median	2.5403	2.6179	157.47	5	5	Median	1853600000	960120000	893460000	112310000	53164000	59146000	242350000	120720000	121630000	677870000	322480000	355390000	821050000	463750000	357290000	23035	950	21813	143573;143574;143575;143576;143577;143578;143579;143580;143581;143582;143583;143584;143585;143586;143587;143588;143589;143590;143591;143592;143593;143594	194235;194236;194237;194238;194239;194240;194241;194242;194243;194244;194245;194246;194247;194248;194249;194250;194251;194252;194253;194254;194255;194256	194244			22	
HVALSVGGR	0	Unmodified	894.50355	0.50354903	3781	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				19.231	18.029	2	0.015128	14454	160511_QHF_FH_JSI9i_3	54.776	41.001			6.4448	5.2609	NaN	1	1	Median	6.4448	5.2609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60367000	8868300	51499000	60367000	8868300	51499000	0	0	0	0	0	0	0	0	0	23036	3781	21814	143595	194257	194257			1	
HVANTLSVYR	0	Unmodified	1158.6146	0.61455605	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.498	24.473	2	0.010912	20239	160511_QHF_FH_JSI12i_3	56.916	38.14			3.1482	3.249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1482	3.249	NaN	1	1	Median	25435000	6017600	19417000	0	0	0	0	0	0	0	0	0	25435000	6017600	19417000	23037	3867	21815	143596	194258	194258			1	
HVATEYQENK	1	Unmodified	1217.5677	0.56766543	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		2	2	8.4955	8.0847	2	0.00018964	5799	160511_QHF_FH_JSI11i_2	93.111	73.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66011000	35060000	30951000	0	0	0	0	0	0	39827000	21916000	17912000	26184000	13144000	13039000	23038	662	21816	143597;143598;143599;143600;143601;143602	194259;194260;194261;194262;194263;194264	194264			6	
HVAVAMNK	1	Unmodified	868.45891	0.45890703	425	O60512	B4GALT3	Beta-1,4-galactosyltransferase 3;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.889	10.984	2	0.0057663	8283	160511_QHF_FH_JSI12i_3	61.494	40.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23039	425	21817	143603	194265	194265			1	
HVAVTNMNEHSSR	0	Unmodified	1480.6841	0.68410895	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0		By MS/MS			2.67	0.471		1	2								3			10.562	9.9816	3	1.1929E-05	7552	160511_QHF_FH_JSI10i_3	112.82	109.63			0.51359	0.61278	73.723	2	2	Median	NaN	NaN	NaN	0	0	Median	0.51359	0.61278	73.723	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104360000	62981000	41381000	0	0	0	104360000	62981000	41381000	0	0	0	0	0	0	23040	1400	21818	143604;143605;143606	194266;194267;194268	194266			3	
HVDLLEVAQETDGFSGSDLK	1	Unmodified	2159.0382	0.038242585	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	85.615	84.874	3	1.6413E-06	74759	160511_QHF_FH_JSI11i_2	93.684	78.529			0.87989	1.0045	22.414	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.78804	0.96341	NaN	1	1	Median	1.0548	1.1066	NaN	1	1	Median	1.3578	1.4936	NaN	1	1	Median	103990000	53681000	50309000	0	0	0	38994000	20883000	18112000	37591000	19711000	17880000	27405000	13088000	14318000	23041	3605	21819	143607;143608;143609;143610	194269;194270;194271;194272	194270			4	
HVDNIMFENHTVADR	0	Unmodified	1796.8264	0.82641609	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	40.992	40.206	3	1.0585E-07	33762	160511_QHF_FH_JSI12i_3	114.63	104.35			1.8523	1.925	9.9124	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8523	1.925	9.9124	2	2	Median	121610000	42452000	79159000	0	0	0	0	0	0	0	0	0	121610000	42452000	79159000	23042	3686	21820	143611;143612	194273;194274	194274			2	
HVDNPNGDGR	0	Unmodified	1079.4744	0.47443375	4609	Q9GZT9;Q9H6Z9	EGLN1;EGLN3	Egl nine homolog 1;Egl nine homolog 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	4.861	4.4695	2	1.0811E-05	2388	160511_QHF_FH_JSI11i_2	104.2	90.204			1.4923	1.5362	25.026	4	1	Median	2.0197	1.7096	NaN	1	0	Median	1.1163	1.3803	NaN	1	0	Median	1.1871	1.16	NaN	1	0	Median	1.876	2.0603	NaN	1	1	Median	141370000	61187000	80182000	35526000	13558000	21969000	29351000	13885000	15465000	49137000	23257000	25880000	27355000	10487000	16868000	23043	4609	21821	143613;143614;143615;143616;143617	194275;194276;194277;194278;194279	194278			5	
HVDTGMGLER	0	Unmodified	1113.5237	0.52369213	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.864	21.655	2	0.013502	17938	160511_QHF_FH_JSI12i_2	53.775	31.035			4.9042	5.3909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9042	5.3909	NaN	1	1	Median	12205000	766480	11438000	0	0	0	0	0	0	0	0	0	12205000	766480	11438000	23044	2907	21822	143618	194280	194280			1	
HVDYVADQIVTK	1	Unmodified	1386.7143	0.71432967	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	42.64	41.672	2;3	2.1721E-06	36629	160511_QHF_FH_JSI10i_2	120.06	112.14			1.2285	1.2023	76.905	2	2	Median	0.79217	0.69796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9051	2.0709	NaN	1	1	Median	157280000	16256000	141020000	36761000	8227000	28534000	29319000	0	29319000	51755000	0	51755000	39441000	8029200	31411000	23045	999	21823	143619;143620;143621;143622;143623	194281;194282;194283;194284;194285	194285			5	
HVDYVVDQVVGK	1	Unmodified	1356.7038	0.70376498	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.013	50.486	2	4.4629E-05	43459	160511_QHF_FH_JSI11i_2	100.88	78.792			0.37767	0.37319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37767	0.37319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56100000	41143000	14957000	0	0	0	0	0	0	56100000	41143000	14957000	0	0	0	23046	2197	21824	143624	194286	194286			1	
HVEASGGSGPGDSGPSDPR	0	Unmodified	1764.7663	0.76631825	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		11.87	11.285	2;3	0.0006376	9152	160511_QHF_FH_JSI10i_2	59.57	36.849			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19109000	19109000	0	8005600	8005600	0	11103000	11103000	0	0	0	0	0	0	0	23047	5466	21825	143625;143626;143627;143628	194287;194288;194289;194290	194290			4	
HVEAVAYYK	1	Unmodified	1078.5447	0.54474515	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		8	4						6	3	6	5	4	26.856	23.211	2	1.2306E-05	12905	160513_QHF_FH_JSI11Kac_6	109.86	91.827			0.19671	0.19157	198.47	11	11	Median	0.19671	0.17107	38.619	3	3	Median	0.46956	0.58327	157.46	2	2	Median	0.30896	0.30767	253.44	4	4	Median	1.0361	1.1803	363.77	2	2	Median	651320000	391430000	259880000	106060000	74983000	31079000	143800000	82212000	61584000	280510000	181580000	98930000	120950000	52659000	68289000	23048	372	21826	143629;143630;143631;143632;143633;143634;143635;143636;143637;143638;143639;143640;143641;143642;143643;143644;143645;143646	194291;194292;194293;194294;194295;194296;194297;194298;194299;194300;194301;194302;194303;194304;194305;194306;194307;194308;194309;194310;194311	194297			21	
HVEDLLTK	1	Unmodified	953.5182	0.51819605	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	30.133	29.218	2	0.0020032	24545	160511_QHF_FH_JSI12i_2	93.429	67.869			0.63289	0.59692	169.27	8	8	Median	0.5358	0.46181	59.63	2	2	Median	2.1235	2.5655	262.45	2	2	Median	1.9289	1.9513	190.84	2	2	Median	0.655	0.74071	229.63	2	2	Median	655410000	358860000	296550000	134030000	72869000	61161000	134830000	74823000	60009000	148350000	65266000	83088000	238200000	145900000	92297000	23049	1016	21827	143647;143648;143649;143650;143651;143652;143653;143654	194312;194313;194314;194315;194316;194317;194318;194319	194312			8	
HVEEFSPR	0	Unmodified	999.47739	0.47739386	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	16.526	15.779	2	0.0017354	12503	160511_QHF_FH_JSI12i_2	98.629	64.457			0.09318	0.11697	145.83	5	4	Median	0.18357	0.15561	NaN	1	0	Median	0.09318	0.11697	NaN	1	1	Median	0.08488	0.085373	NaN	1	1	Median	0.42033	0.47147	244.17	2	2	Median	564890000	438350000	126540000	65140000	54644000	10497000	97032000	87587000	9445000	117730000	105610000	12118000	284990000	190510000	94484000	23050	2545	21828	143655;143656;143657;143658;143659	194320;194321;194322;194323;194324;194325	194320			6	
HVENDGYK	1	Unmodified	960.43011	0.43010932	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.37		3						2		1	1	1	2	5.8903	3.1524	2	0.0014005	3190	160511_QHF_FH_JSI12i_2	105.14	86.757			0.53515	0.59436	33.451	4	3	Linear	0.9191	0.80861	NaN	1	1	Median	0.45282	0.54431	NaN	1	1	Median	1.174	1.1129	NaN	1	0	Median	0.5153	0.56989	NaN	1	1	Median	405090000	272820000	132270000	129070000	74797000	54278000	147370000	107580000	39786000	2282700	837680	1445000	126370000	89604000	36762000	23051	275	21829	143660;143661;143662;143663;143664	194326;194327;194328;194329;194330;194331	194326			6	
HVEPGNAAIR	0	Unmodified	1062.557	0.55704117	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	11.785	11.372	2	0.00014767	8934	160511_QHF_FH_JSI12i_2	96.492	82.82			0.45053	0.46151	196.19	8	8	Median	0.97398	0.82968	180.2	2	2	Median	0.21889	0.27182	172.12	2	2	Median	0.40539	0.40524	351.26	2	2	Median	0.46488	0.51813	266.2	2	2	Median	837620000	484380000	353240000	149550000	76486000	73064000	198100000	106380000	91727000	300660000	186860000	113800000	189310000	114660000	74654000	23052	2764	21830	143665;143666;143667;143668;143669;143670;143671;143672;143673;143674	194332;194333;194334;194335;194336;194337;194338;194339;194340;194341;194342	194334			11	
HVESVDK	1	Unmodified	812.40283	0.40283194	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	5.3298	4.8939	2	0.010009	2859	160511_QHF_FH_JSI12i_2	81.784	53.677			7.5006	7.5092	48.444	3	3	Median	NaN	NaN	NaN	0	0	Median	2.8683	3.5332	NaN	1	1	Median	7.5006	7.5092	NaN	1	1	Median	7.6203	8.7251	NaN	1	1	Median	346440000	147080000	199350000	0	0	0	86705000	40050000	46656000	121000000	11235000	109770000	138720000	95796000	42929000	23053	2506	21831	143675;143676;143677;143678	194343;194344;194345;194346	194344			4	
HVFAIFNTEQR	0	Unmodified	1360.6888	0.68878362	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.4			7						10	6	5	4	2	59.045	52.654	2;3	4.1374E-12	27806	160513_QHF_FH_JSI9Kac_6	114.4	105.66			5.731	5.5828	240.73	15	15	Median	12.85	10.58	291.56	5	5	Median	8.7749	10.533	257.39	5	5	Median	2.9069	2.8228	244.81	3	3	Median	9.3786	10.093	130.6	2	2	Median	386870000	148920000	237950000	159700000	49605000	110100000	181560000	85201000	96358000	33187000	12237000	20950000	12419000	1875100	10544000	23054	1711	21832	143679;143680;143681;143682;143683;143684;143685;143686;143687;143688;143689;143690;143691;143692;143693;143694;143695	194347;194348;194349;194350;194351;194352;194353;194354;194355;194356;194357;194358;194359;194360;194361;194362;194363;194364;194365	194360			19	
HVFDMKPK	2	Acetyl (K)	1042.527	0.52698659	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	40.909	31.458	2	0.018282	16609	160513_QHF_FH_JSI12Kac_6	69.423	60.56			0.58251	0.61923	267.39	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1848	4.1018	NaN	1	1	Median	0.081082	0.093481	NaN	1	1	Median	7568500	3831100	3737400	0	0	0	0	0	0	5071000	1399300	3671700	2497500	2431700	65763	23055	4559	21833	143696;143697	194366;194367	194367	3185		2	
HVFGESDELIGQK	1	Unmodified	1457.7151	0.71505795	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.52	4	21	16					15	14	19	17	18	16	47.946	43.245	2;3	3.6096E-44	38169	160511_QHF_FH_JSI9i_2	252.42	240.55			0.85227	0.77826	229.51	54	52	Median	1.2421	1.046	213.29	14	13	Median	1.6419	1.9575	200.75	13	12	Median	0.43489	0.43022	256.44	16	16	Median	4.6303	5.1958	258.7	11	11	Median	19033000000	9535100000	9497700000	3136700000	1434600000	1702100000	4343900000	2296900000	2046900000	7652100000	3931500000	3720700000	3900100000	1872200000	2028000000	23056	1908	21834	143698;143699;143700;143701;143702;143703;143704;143705;143706;143707;143708;143709;143710;143711;143712;143713;143714;143715;143716;143717;143718;143719;143720;143721;143722;143723;143724;143725;143726;143727;143728;143729;143730;143731;143732;143733;143734;143735;143736;143737;143738;143739;143740;143741;143742;143743;143744;143745;143746;143747;143748;143749;143750;143751;143752;143753;143754;143755;143756;143757;143758;143759;143760;143761;143762;143763;143764;143765;143766;143767	194368;194369;194370;194371;194372;194373;194374;194375;194376;194377;194378;194379;194380;194381;194382;194383;194384;194385;194386;194387;194388;194389;194390;194391;194392;194393;194394;194395;194396;194397;194398;194399;194400;194401;194402;194403;194404;194405;194406;194407;194408;194409;194410;194411;194412;194413;194414;194415;194416;194417;194418;194419;194420;194421;194422;194423;194424;194425;194426;194427;194428;194429;194430;194431;194432;194433;194434;194435;194436;194437;194438;194439;194440;194441;194442;194443;194444;194445;194446;194447;194448;194449;194450;194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477;194478;194479;194480;194481;194482;194483;194484;194485	194423			118	
HVFGQAVK	1	Unmodified	884.48684	0.48683634	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	3	2	13.053	12.766	2	0.00070109	9753	160511_QHF_FH_JSI12i_3	122.79	83.248			4.632	4.7118	305.18	7	7	Median	0.041912	0.033836	NaN	1	1	Median	27.944	32.582	NaN	1	1	Median	4.632	4.7118	201.33	3	3	Median	0.68868	0.69639	425.53	2	2	Median	778370000	494090000	284280000	83861000	79601000	4260500	49971000	22636000	27335000	279990000	130250000	149740000	364550000	261610000	102940000	23057	5411	21835	143768;143769;143770;143771;143772;143773;143774;143775;143776	194486;194487;194488;194489;194490;194491;194492;194493;194494	194494			9	
HVFGQPVK	1	Unmodified	910.50249	0.5024864	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	4.91		6	5						2	3	3	4	3	15.377	14.877	2	0.0016025	11331	160511_QHF_FH_JSI12i_3	101.21	75.761			6.5699	5.993	251.05	10	10	Median	14.235	12.161	36.556	2	2	Median	23.632	28.795	309.21	3	3	Plateau	0.81804	0.81639	265.84	4	4	Median	14.697	15.757	NaN	1	1	Median	709600000	252380000	457210000	45188000	5716600	39472000	96904000	53694000	43210000	372440000	190980000	181460000	195060000	1986400	193080000	23058	4366	21836	143777;143778;143779;143780;143781;143782;143783;143784;143785;143786;143787;143788;143789	194495;194496;194497;194498;194499;194500;194501;194502;194503;194504;194505;194506;194507	194506			13	
HVFIDLPTLQER	0	Unmodified	1466.7882	0.78816332	5477	Q9UQ90	SPG7	Paraplegin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	73.297	73.101	2;3	0.00058966	65201	160511_QHF_FH_JSI11i_3	69.451	57.837			0.10641	0.10489	18.366	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.097949	0.092116	NaN	1	1	Median	0.11561	0.11944	NaN	1	1	Median	44942000	40719000	4222600	0	0	0	0	0	0	19575000	17776000	1798400	25368000	22943000	2424100	23059	5477	21837	143790;143791;143792;143793	194508;194509;194510;194511	194508			4	
HVFLTGPPGVGK	1	Unmodified	1207.6713	0.67134264	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		2	10							4	4	2	2	45.478	44.478	2;3	1.4676E-06	37652	160511_QHF_FH_JSI12i_3	120.76	113.7			13.413	13.123	238.64	10	10	Median	13.143	11.274	273.48	4	4	Median	11.894	14.324	296.09	4	4	Median	12.238	11.39	NaN	1	1	Median	14.7	15.119	NaN	1	1	Median	884220000	132610000	751610000	221590000	47984000	173610000	209040000	71254000	137780000	170850000	6018100	164830000	282740000	7350300	275390000	23060	4394	21838	143794;143795;143796;143797;143798;143799;143800;143801;143802;143803;143804;143805	194512;194513;194514;194515;194516;194517;194518;194519;194520;194521;194522;194523	194522			12	
HVFNMLK	1	Unmodified	887.46874	0.46874343	823	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			36.048	34.597	2	0.012383	28867	160511_QHF_FH_JSI10i_3	74.191	74.191			0.63563	0.72948	64.077	3	3	Plateau	0.48677	0.40008	76.199	2	2	Median	0.63563	0.72948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115380000	67329000	48055000	65501000	36495000	29006000	49883000	30834000	19048000	0	0	0	0	0	0	23061	823	21839	143806;143807;143808	194524;194525;194526	194524			3	
HVFTTFYAK	1	Unmodified	1112.5655	0.56548059	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.72		4	5						8	3	5	5	4	43.783	39.124	2;3	4.7127E-11	21347	160513_QHF_FH_JSI10Kac_6	152.63	127.71			0.16251	0.15305	258.5	16	16	Median	0.10033	0.086872	294.67	3	3	Plateau	10.239	12.229	297.82	5	5	Median	0.15541	0.14925	260.12	5	5	Median	0.66652	0.6762	217.74	3	3	Plateau	2213800000	971600000	1242200000	165180000	108100000	57078000	365460000	123490000	241970000	734750000	370290000	364460000	948390000	369720000	578660000	23062	4438	21840	143809;143810;143811;143812;143813;143814;143815;143816;143817;143818;143819;143820;143821;143822;143823;143824;143825	194527;194528;194529;194530;194531;194532;194533;194534;194535;194536;194537;194538;194539;194540;194541;194542;194543;194544;194545	194543			19	
HVFTTFYAKTK	2	Acetyl (K)	1383.7187	0.71868677	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		57.788	48.066	2;3	0.00092547	25981	160513_QHF_FH_JSI11Kac_6	87.298	70.272			0.14402	0.14314	122.22	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14402	0.14314	122.22	2	2	Median	NaN	NaN	NaN	0	0	Median	10787000	9412300	1375100	0	0	0	0	0	0	10787000	9412300	1375100	0	0	0	23063	4438	21841	143826;143827	194546;194547	194546	3158		2	
HVFWGSGSHTLPALLENLK	1	Unmodified	2105.1058	0.10580906	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.81	6.49			10						11	8	5	7	1	92.677	88.656	3;4	1.4114E-11	89820	160511_QHF_FH_JSI11i_3	132.64	116.34			0.87735	0.82499	73.463	19	14	Median	1.1522	1.0091	73.087	8	5	Median	0.62042	0.72716	62.459	5	5	Median	0.29507	0.82499	62.377	5	3	Linear	0.15728	0.16776	NaN	1	1	Median	2426600000	1312700000	1113900000	597550000	267130000	330420000	1383700000	760450000	623290000	347050000	195850000	151200000	98254000	89240000	9013100	23064	793	21842	143828;143829;143830;143831;143832;143833;143834;143835;143836;143837;143838;143839;143840;143841;143842;143843;143844;143845;143846;143847;143848	194548;194549;194550;194551;194552;194553;194554;194555;194556;194557;194558;194559;194560;194561;194562;194563;194564;194565;194566;194567;194568;194569;194570;194571	194551			23	
HVGDLGNVTADK	1	Unmodified	1224.6099	0.6098646	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.53	3	14	6					6	1	6	6	10	8	27.278	24.425	2;3	1.8797E-05	20918	160511_QHF_FH_JSI12i_2	174.4	138.95			4.4854	4.4764	349.47	22	22	Median	0.36464	0.31129	344.36	3	3	Plateau	11.549	14.035	367.15	4	4	Median	3.1306	2.9065	389.58	9	9	Median	0.87601	0.99031	365.77	6	6	Median	8789400000	4379500000	4409900000	1121000000	499640000	621390000	1672900000	788570000	884350000	3884100000	1933900000	1950200000	2111400000	1157400000	953950000	23065	769	21843	143849;143850;143851;143852;143853;143854;143855;143856;143857;143858;143859;143860;143861;143862;143863;143864;143865;143866;143867;143868;143869;143870;143871;143872;143873;143874;143875;143876;143877;143878	194572;194573;194574;194575;194576;194577;194578;194579;194580;194581;194582;194583;194584;194585;194586;194587;194588;194589;194590;194591;194592;194593;194594;194595;194596;194597;194598;194599;194600;194601;194602;194603;194604;194605;194606;194607	194580			36	
HVGMAVAGLLADAR	0	Unmodified	1379.7344	0.73435361	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.57	6.29		1	8						5	4	5	5		69.76	65.802	2;3	7.1084E-13	54451	160511_QHF_FH_JSI9i_3	122.51	100.42			0.54397	0.51445	137.58	12	12	Median	0.67735	0.56758	103.92	2	2	Median	0.26699	0.31428	164.09	5	5	Median	0.88531	0.84211	148.55	5	5	Median	NaN	NaN	NaN	0	0	Median	801410000	474070000	327340000	69396000	44615000	24781000	294250000	213430000	80823000	437760000	216020000	221740000	0	0	0	23066	1266	21844	143879;143880;143881;143882;143883;143884;143885;143886;143887;143888;143889;143890;143891;143892	194608;194609;194610;194611;194612;194613;194614;194615;194616;194617;194618;194619;194620;194621;194622	194617			15	
HVGNQQYNVTYVVK	1	Unmodified	1647.8369	0.83690442	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.38		13	8						10	4	8	11	8	41.536	38.387	2;3	3.4415E-06	33934	160511_QHF_FH_JSI10i_2	131.82	122.63			0.98253	0.91817	170.42	22	22	Median	2.6788	2.2913	177.99	4	4	Median	0.27623	0.34855	210.37	5	5	Median	0.34015	0.32555	182.99	7	7	Median	1.1287	1.1845	154.7	6	6	Median	1622100000	754900000	867190000	158200000	47141000	111060000	348470000	167080000	181390000	600460000	299510000	300950000	514960000	241170000	273780000	23067	512	21845	143893;143894;143895;143896;143897;143898;143899;143900;143901;143902;143903;143904;143905;143906;143907;143908;143909;143910;143911;143912;143913;143914;143915;143916;143917;143918;143919;143920;143921;143922;143923	194623;194624;194625;194626;194627;194628;194629;194630;194631;194632;194633;194634;194635;194636;194637;194638;194639;194640;194641;194642;194643;194644;194645;194646;194647;194648;194649;194650;194651;194652;194653;194654;194655;194656;194657;194658;194659	194644			37	
HVGPGVLSMANAGPNTNGSQFFICTIK	1	Unmodified	2816.3738	0.37380378	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		90.385	89.514	3	2.2373E-14	74641	160511_QHF_FH_JSI10i_3	105.03	101.43			1.0019	0.84321	70.162	4	4	Median	1.0019	0.84321	62.865	2	2	Median	0.81785	0.91616	103.67	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95236000	65657000	29579000	22709000	11060000	11649000	43575000	25645000	17930000	28952000	28952000	0	0	0	0	23068	1348	21846	143924;143925;143926;143927;143928	194660;194661;194662;194663;194664;194665	194661			6	
HVGSNLCLDSR	0	Unmodified	1256.5932	0.59316868	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		22.426	22.426	2	0.025141	18982	160511_QHF_FH_JSI11i_3	48.423	27.553			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20749000	0	20749000	0	0	0	0	0	0	20749000	0	20749000	0	0	0	23069	2294	21847	143929	194666	194666			1	
HVIADQEVMETNRVESVEPSENEASK	1	Unmodified	2926.3614	0.36144399	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.43	0.495		4	3								4	3		47.147	46.597	3;4	2.935E-16	41109	160511_QHF_FH_JSI11i_3	115.88	109.15			0.64169	0.77066	40.699	4	4	Median	NaN	NaN	NaN	0	0	Median	0.64169	0.77066	40.699	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	229500000	116030000	113480000	0	0	0	157450000	92224000	65228000	72053000	23804000	48249000	0	0	0	23070	4686	21848	143930;143931;143932;143933;143934;143935;143936	194667;194668;194669;194670;194671;194672;194673;194674;194675	194668			9	
HVIECAK	1	Unmodified	855.42727	0.42727255	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	7.0117	6.41	2	0.011745	4279	160511_QHF_FH_JSI12i_2	60.799	43.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23071	1557	21849	143937	194676	194676			1	
HVILGTQQFK	1	Unmodified	1169.6557	0.65569258	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	35.188	34.666	2	1.2378E-05	29207	160511_QHF_FH_JSI12i_3	113.71	91.47			4.768	4.9429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.768	4.9429	NaN	1	1	Median	72389000	11312000	61077000	0	0	0	9672700	9672700	0	25288000	0	25288000	37428000	1639000	35789000	23072	282	21850	143938;143939;143940	194677;194678;194679	194679			3	
HVILSEIK	1	Unmodified	937.55967	0.55966693	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.3	6.6		1							2	1		1	1	37.601	32.15	2	0.0020904	17230	160513_QHF_FH_JSI9Kac_6	75.189	46.767			0.008463	0.0084085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.008463	0.0084085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24975000	24950000	24982	0	0	0	0	0	0	3350000	3325100	24982	21625000	21625000	0	23073	4352	21851	143941;143942;143943	194680;194681;194682	194682			3	
HVINFDLPSDIEEYVHR	0	Unmodified	2082.0171	0.017053633	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.85	0.361		2	11								1	3	9	90.294	90.142	3;4	7.9212E-13	78141	160511_QHF_FH_JSI12i_3	115.8	104.69			0.83383	0.83768	44.571	12	5	Median	NaN	NaN	NaN	0	0	Median	1.1652	1.4006	NaN	1	0	Median	1.1321	1.0467	2.4144	3	0	Median	0.68875	0.71457	51.478	8	5	Median	928500000	425360000	503130000	0	0	0	25533000	13929000	11604000	365570000	168980000	196590000	537390000	242460000	294940000	23074	154	21852	143944;143945;143946;143947;143948;143949;143950;143951;143952;143953;143954;143955;143956	194683;194684;194685;194686;194687;194688;194689;194690;194691;194692;194693;194694;194695;194696;194697	194697			12	
HVINMCLNVIK	1	Unmodified	1339.7104	0.71044704	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.2	6.37			3						2			4	1	62.504	57.638	2;3	1.3875E-05	49394	160511_QHF_FH_JSI12i_3	106.68	78.284			1.5914	1.4304	35.635	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.445	1.338	9.4472	2	2	Median	2.4684	2.4533	NaN	1	1	Median	77815000	22692000	55123000	0	0	0	0	0	0	49880000	17250000	32630000	27935000	5442200	22493000	23075	2349	21853	143957;143958;143959;143960;143961	194698;194699;194700;194701;194702;194703	194702			6	
HVIPMNPNTDDLFK	1	Unmodified	1639.8028	0.8028271	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.37	0.483		17	10							7	5	8	7	64.49	63.727	2;3	1.4437E-33	55601	160511_QHF_FH_JSI11i_2	234.17	184.82			0.34466	0.2921	234.05	19	17	Median	0.35404	0.2921	197.79	5	5	Median	0.94388	1.1518	284.08	4	3	Median	0.2373	0.22707	274.57	5	4	Median	0.34466	0.33014	263.72	5	5	Median	3803500000	2001700000	1801800000	678740000	298890000	379850000	964250000	571560000	392690000	1467900000	734450000	733430000	692610000	396770000	295840000	23076	1039	21854	143962;143963;143964;143965;143966;143967;143968;143969;143970;143971;143972;143973;143974;143975;143976;143977;143978;143979;143980;143981;143982;143983;143984;143985;143986;143987;143988	194704;194705;194706;194707;194708;194709;194710;194711;194712;194713;194714;194715;194716;194717;194718;194719;194720;194721;194722;194723;194724;194725;194726;194727;194728;194729;194730;194731;194732;194733;194734;194735;194736;194737;194738;194739;194740;194741;194742;194743;194744;194745;194746;194747;194748;194749	194731			46	
HVIPMNPNTDDLFK	1	Oxidation (M)	1655.7977	0.79774172	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									2	3	2	52.884	51.998	2;3	0.00021702	44958	160511_QHF_FH_JSI11i_2	88.087	78.029			0.33243	0.34697	41.531	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.40805	0.49906	NaN	1	1	Median	0.33243	0.32733	NaN	1	1	Median	0.68668	0.75111	NaN	1	1	Median	189530000	114960000	74569000	0	0	0	55845000	42233000	13612000	94916000	58983000	35933000	38766000	13742000	25024000	23077	1039	21854	143989;143990;143991;143992;143993;143994;143995	194750;194751;194752;194753;194754;194755;194756	194754		654	7	
HVISYSLSPFEQR	0	Unmodified	1561.7889	0.7888916	222	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.72		8	8						13	6	8	7	8	62.645	57.899	2;3	7.1857E-34	49831	160511_QHF_FH_JSI12i_3	244.24	224.03			0.35885	0.40622	114.28	23	23	Median	1.0496	0.89386	107.23	5	5	Median	0.3415	0.39587	89.351	6	6	Median	0.21447	0.20254	151.12	5	5	Median	0.35885	0.40622	134.64	7	7	Median	1884900000	1128200000	756780000	299510000	175210000	124300000	303060000	193000000	110060000	600480000	351830000	248660000	681890000	408130000	273760000	23078	222	21855	143996;143997;143998;143999;144000;144001;144002;144003;144004;144005;144006;144007;144008;144009;144010;144011;144012;144013;144014;144015;144016;144017;144018;144019;144020;144021;144022;144023;144024	194757;194758;194759;194760;194761;194762;194763;194764;194765;194766;194767;194768;194769;194770;194771;194772;194773;194774;194775;194776;194777;194778;194779;194780;194781;194782;194783;194784;194785;194786;194787;194788;194789;194790	194781			34	
HVKEAFR	1	Acetyl (K)	927.49265	0.49265	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	21.695	13.934	2	0.023222	8584	160513_QHF_FH_JSI10Kac_6	80.684	36.567			0.05058	0.048106	101.38	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.065771	0.078335	NaN	1	1	Median	0.05058	0.048106	NaN	1	1	Median	0.31407	0.33753	NaN	1	1	Median	33506000	30385000	3120800	0	0	0	10095000	9785200	309950	17343000	15166000	2176700	6068400	5434300	634140	23079	2545	21856	144025;144026;144027	194791;194792;194793	194793	2529		3	
HVLDALDPNAYEAFK	1	Unmodified	1701.8362	0.83623572	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										3	1	75.813	75.18	2;3	1.3129E-16	66158	160511_QHF_FH_JSI11i_2	122.7	103.57			1.2639	1.2711	88.212	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2639	1.2711	88.212	2	2	Median	NaN	NaN	NaN	0	0	Median	51794000	22061000	29733000	0	0	0	0	0	0	51794000	22061000	29733000	0	0	0	23080	1694	21857	144028;144029;144030;144031	194794;194795;194796;194797	194797			4	
HVLDTLIQLAK	1	Unmodified	1249.7394	0.73942221	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	2.78		9	13						1	5	6	5	7	78.047	76.887	2;3	1.3205E-06	66735	160511_QHF_FH_JSI12i_3	114.5	104.81			24.202	22.555	323.24	8	8	Median	12.602	11.003	NaN	1	1	Median	0.21227	0.24813	380.8	3	3	Plateau	97.431	92.351	NaN	1	1	Median	46.479	46.234	426.79	3	3	Median	993400000	622980000	370410000	61469000	29389000	32080000	111120000	64245000	46879000	214380000	169980000	44402000	606420000	359370000	247050000	23081	3290	21858	144032;144033;144034;144035;144036;144037;144038;144039;144040;144041;144042;144043;144044;144045;144046;144047;144048;144049;144050;144051;144052;144053;144054	194798;194799;194800;194801;194802;194803;194804;194805;194806;194807;194808;194809;194810;194811;194812;194813;194814;194815;194816;194817;194818;194819;194820;194821;194822;194823	194819			26	
HVLEGHDR	0	Unmodified	961.47298	0.47297719	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	4.6347	4.7041	2;3	0.00049494	2184	160511_QHF_FH_JSI12i_3	80.455	55.317			1.5054	1.4132	159.96	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5054	1.4132	NaN	1	1	Median	2.1445	2.2093	223.26	2	2	Median	1158100000	364250000	793890000	0	0	0	0	0	0	142310000	58806000	83509000	1015800000	305450000	710380000	23082	1805	21859	144055;144056;144057;144058	194824;194825;194826;194827	194825			4	
HVLFPLK	1	Unmodified	852.52216	0.52215921	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.08		4	10						3	3	5	3	6	48.068	45.727	2;3	0.0026906	23953	160513_QHF_FH_JSI12Kac_6	83.229	55.912			0.058972	0.066069	245.7	11	11	Median	0.069267	0.057567	31.886	2	2	Median	0.053171	0.066069	370.16	3	3	Median	0.056737	0.055306	9.8497	2	2	Median	0.028849	0.029694	261.63	4	4	Linear	1418200000	1125300000	292940000	194500000	174560000	19934000	431750000	269740000	162010000	289500000	270400000	19097000	502450000	410550000	91901000	23083	1823	21860	144059;144060;144061;144062;144063;144064;144065;144066;144067;144068;144069;144070;144071;144072;144073;144074;144075	194828;194829;194830;194831;194832;194833;194834;194835;194836;194837;194838;194839;194840;194841;194842;194843;194844;194845;194846;194847	194847			20	
HVLKIQK	2	Acetyl (K)	906.56509	0.56508666	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		27.341	18.209	2	0.041761	10902	160513_QHF_FH_JSI11Kac_6	69.383	17.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5438000	5438000	0	0	0	0	0	0	0	5438000	5438000	0	0	0	0	23084	2284	21861	144076	194848	194848			1	
HVLLQEEVAELQGQVQR	0	Unmodified	1975.0487	0.048688112	3105	Q6P4E1	CASC4	Protein CASC4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.48	73.185	3	0.021728	63524	160511_QHF_FH_JSI12i_3	26.548	15.074			3.3244	3.4077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3244	3.4077	NaN	1	1	Median	16671000	1256000	15415000	0	0	0	0	0	0	0	0	0	16671000	1256000	15415000	23085	3105	21862	144077	194849	194849			1	
HVLLTIK	1	Unmodified	822.53272	0.5327239	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11.7	6.13			1						2	2		1		39.32	34.031	2	0.012236	18789	160513_QHF_FH_JSI11Kac_6	68.7	35.917			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35681000	35681000	0	35681000	35681000	0	0	0	0	0	0	0	0	0	0	23086	2761	21863	144078;144079;144080	194850;194851;194852	194850			3	
HVLSVLSK	1	Unmodified	881.53345	0.53345218	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.92		1	9						4	4	2	4	4	33.187	29.87	2	0.00041779	25185	160511_QHF_FH_JSI12i_3	129.47	66.749			0.0092514	0.0038947	470.87	6	6	Plateau	0.91997	0.74985	645.68	2	2	Median	0.0090413	0.010561	NaN	1	1	Median	0.53347	0.50009	638.71	2	2	Median	0.00385	0.0038947	NaN	1	1	Median	2788500000	1663400000	1125100000	613290000	325640000	287650000	511880000	300070000	211820000	560250000	347160000	213090000	1103100000	690550000	412540000	23087	1629	21864	144081;144082;144083;144084;144085;144086;144087;144088;144089;144090;144091;144092;144093;144094	194853;194854;194855;194856;194857;194858;194859;194860;194861;194862;194863;194864;194865;194866;194867	194866			15	
HVLTGSADNSCR	0	Unmodified	1315.5939	0.59389696	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.67		8	4						1	2	2	5	4	8.2274	7.9483	2	5.9806E-11	5690	160511_QHF_FH_JSI11i_3	192.38	181.16			0.091912	0.093075	220.88	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.020713	0.019522	NaN	1	1	Median	0.40785	0.44376	NaN	1	1	Median	551100000	273580000	277520000	39538000	15019000	24519000	114150000	66981000	47168000	216450000	117670000	98778000	180970000	73914000	107060000	23088	2391	21865	144095;144096;144097;144098;144099;144100;144101;144102;144103;144104;144105;144106;144107	194868;194869;194870;194871;194872;194873;194874;194875;194876;194877;194878;194879;194880	194869			13	
HVLVILTDMSSYAEALR	0	Unmodified	1917.003	0.002983473	1189	P21281;P15313	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			92.499	85.732	3	0.00012545	49405	160513_QHF_FH_JSI10Kac_6	79.471	60.179			0.1364	0.15992	247.19	3	3	Plateau	10.071	8.7432	NaN	1	1	Median	1.2818	1.5073	318.74	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	248800000	114380000	134430000	67373000	5120000	62253000	181430000	109260000	72175000	0	0	0	0	0	0	23089	1189	21866	144108;144109;144110	194881;194882;194883;194884	194882			4	
HVLVTLGEK	1	Unmodified	994.58113	0.58113065	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.79		10	9						6	6	8	5	6	34.024	31.249	2;3	1.0451E-08	27496	160511_QHF_FH_JSI9i_2	160.88	124.48			9.0384	9.4379	380.94	24	24	Median	0.82331	0.66798	406.9	6	6	Median	12.532	14.262	403.86	7	7	Median	10.108	10.541	413.44	5	5	Median	0.42068	0.44377	406.35	6	6	Median	9490300000	4642900000	4847400000	1246800000	609360000	637440000	1943000000	1105100000	837930000	2786900000	866100000	1920800000	3513600000	2062400000	1451200000	23090	1915	21867	144111;144112;144113;144114;144115;144116;144117;144118;144119;144120;144121;144122;144123;144124;144125;144126;144127;144128;144129;144130;144131;144132;144133;144134;144135	194885;194886;194887;194888;194889;194890;194891;194892;194893;194894;194895;194896;194897;194898;194899;194900;194901;194902;194903;194904;194905;194906;194907;194908;194909;194910;194911;194912;194913;194914;194915;194916	194899			32	
HVMDGSLPTSLK	1	Unmodified	1283.6544	0.65437195	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	3	1	2	43.316	42.29	2;3	2.5798E-05	35991	160511_QHF_FH_JSI12i_2	133.81	116.58			0.10561	0.1296	256.14	7	7	Median	0.07975	0.06897	NaN	1	1	Median	0.14792	0.18009	236.85	3	3	Median	0.089884	0.092712	NaN	1	1	Median	1.6043	1.785	425.4	2	2	Median	411530000	284200000	127330000	42940000	38878000	4062300	140350000	98420000	41927000	93148000	86232000	6916200	135090000	60666000	74425000	23091	3290	21868	144136;144137;144138;144139;144140;144141;144142	194917;194918;194919;194920;194921;194922;194923	194917			7	
HVMDVVDEELSK	1	Unmodified	1399.6653	0.66533057	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	53.994	53.029	2	2.6747E-07	45526	160511_QHF_FH_JSI12i_2	129.89	120.4			0.73765	0.6301	257.52	8	7	Median	0.73765	0.6301	293.37	2	2	Median	0.72761	0.8842	358.04	2	2	Median	0.52284	0.53387	361.76	2	2	Median	0.73285	0.8211	340.29	2	1	Median	1113200000	563670000	549510000	192860000	95839000	97024000	275600000	149060000	126540000	365720000	190900000	174810000	279000000	127870000	151130000	23092	1459	21869	144143;144144;144145;144146;144147;144148;144149;144150	194924;194925;194926;194927;194928;194929;194930;194931;194932;194933;194934	194924			11	
HVMLPKDIAK	2	Acetyl (K)	1192.6638	0.66381443	1932	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.465	47.74	2	0.00018925	25822	160513_QHF_FH_JSI11Kac_6	93.649	47.223			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7757100	7757100	0	0	0	0	0	0	0	7757100	7757100	0	0	0	0	23093	1932	21870	144151	194935	194935	1939		1	
HVMNFTNWAIASGSSTALLYSK	1	Unmodified	2397.1787	0.17871601	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		86.267	77.3	3	1.0516E-07	42609	160513_QHF_FH_JSI9Kac_6	122.3	108.28			0.72566	0.6524	113.5	2	2	Median	1.6987	1.4556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31	0.29239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118240000	56899000	61340000	54301000	20627000	33674000	0	0	0	63937000	36272000	27666000	0	0	0	23094	5461	21871	144152;144153	194936;194937	194937			2	
HVMQPYYK	1	Unmodified	1064.5113	0.51133653	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							1	2	3	4	19.971	19.315	2	0.00070109	16345	160511_QHF_FH_JSI10i_2	122.79	103			0.60588	0.58433	179.68	10	9	Median	0.92103	0.78384	NaN	1	1	Median	1.4085	1.7051	278.81	2	2	Median	8.6432	7.8726	252.82	3	3	Median	0.33458	0.37168	68.326	4	3	Median	1323800000	721280000	602500000	76453000	40948000	35505000	285290000	138090000	147210000	462740000	186230000	276510000	499290000	356010000	143280000	23095	2094	21872	144154;144155;144156;144157;144158;144159;144160;144161;144162;144163	194938;194939;194940;194941;194942;194943;194944;194945;194946;194947;194948	194946			11	
HVNPVQALSEFK	1	Unmodified	1367.7197	0.7197494	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.42		8	6						1	2	1	4	8	61.348	60.629	2;3	1.8467E-05	53478	160511_QHF_FH_JSI11i_3	129.88	96.878			0.87389	0.98465	184.93	12	12	Median	0.075461	0.063106	NaN	1	1	Median	1.3625	1.6882	NaN	1	1	Median	1.2073	1.1285	186.68	4	4	Median	1.881	1.9884	191.05	6	6	Median	984330000	516550000	467780000	62557000	53133000	9423200	79879000	41871000	38009000	351680000	181330000	170350000	490210000	240210000	250000000	23096	1421	21873	144164;144165;144166;144167;144168;144169;144170;144171;144172;144173;144174;144175;144176;144177;144178	194949;194950;194951;194952;194953;194954;194955;194956;194957;194958;194959;194960;194961;194962;194963;194964	194950			16	
HVPGGGNVQIQNK	1	Unmodified	1346.7055	0.70549632	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8								3	7	3	18.89	18.656	2;3	6.7861E-06	15449	160511_QHF_FH_JSI11i_3	128.36	77.483			0.23606	0.28692	176.19	11	11	Median	NaN	NaN	NaN	0	0	Median	0.22281	0.26596	161.67	3	3	Plateau	3.653	3.5155	207.19	5	5	Median	0.15978	0.16044	182.16	3	3	Median	737360000	416640000	320720000	0	0	0	138080000	86814000	51263000	356550000	145970000	210580000	242730000	183860000	58875000	23097	1298	21874	144179;144180;144181;144182;144183;144184;144185;144186;144187;144188;144189;144190;144191	194965;194966;194967;194968;194969;194970;194971;194972;194973;194974;194975;194976;194977;194978;194979;194980	194966			16	
HVPSGQIMAVK	1	Unmodified	1165.6278	0.62776327	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	31.196	30.706	2	0.00060997	25857	160511_QHF_FH_JSI12i_3	83.869	47.487			2.3804	2.2159	175.11	7	7	Median	3.3411	2.9073	NaN	1	1	Median	1.2272	1.5099	190.29	2	2	Median	3.5212	3.3903	60.144	2	2	Median	0.2485	0.25354	255.93	2	2	Median	413130000	213190000	199940000	31822000	9084700	22738000	65278000	33289000	31989000	140610000	55029000	85581000	175420000	115790000	59635000	23098	1772	21875	144192;144193;144194;144195;144196;144197;144198	194981;194982;194983;194984;194985;194986;194987;194988	194988			8	
HVPVVYVDYPGPASLTQIYGTFNR	0	Unmodified	2692.3649	0.36493687	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.88	1	2	2						4	1	4	2	2	96.007	92.629	3	2.1153E-93	43572	160513_QHF_FH_JSI12Kac_6	223.82	207.32			1.1489	1.1524	42.975	9	2	Median	1.3482	1.1524	NaN	1	0	Median	0.86297	1.0363	66.47	4	2	Median	1.0041	0.95437	23.12	2	0	Median	1.1534	1.1981	4.5028	2	0	Median	1312600000	698630000	614020000	88094000	32056000	56038000	584030000	321620000	262410000	319590000	161460000	158130000	320940000	183490000	137440000	23099	2517	21876	144199;144200;144201;144202;144203;144204;144205;144206;144207	194989;194990;194991;194992;194993;194994;194995	194993			7	
HVQGILR	0	Unmodified	821.48717	0.48717069	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4	4.02		3	6						1	3	6		1	18.23	16.746	2	8.5021E-06	13286	160511_QHF_FH_JSI9i_3	150.82	52.789			1.0229	1.1264	264.13	10	10	Median	13.082	11.371	360.14	3	3	Median	0.89542	1.0908	258.63	6	6	Median	NaN	NaN	NaN	0	0	Median	0.29861	0.30031	NaN	1	1	Median	2127100000	1080700000	1046400000	866340000	305450000	560890000	899460000	553030000	346440000	0	0	0	361250000	222190000	139070000	23100	37	21877	144208;144209;144210;144211;144212;144213;144214;144215;144216;144217	194996;194997;194998;194999;195000;195001;195002;195003;195004;195005;195006	194999			11	
HVQLVMEAIGK	1	Unmodified	1223.6696	0.66962808	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.305	58.305	2	7.6041E-05	51736	160511_QHF_FH_JSI11i_3	100.79	90.095			0.023367	0.021579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.023367	0.021579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43935000	42870000	1065600	0	0	0	0	0	0	43935000	42870000	1065600	0	0	0	23101	2904	21878	144218	195007	195007			1	
HVQPTLDLMEAELRK	1	Unmodified	1778.9349	0.93490391	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.184	64.894	3	8.6629E-05	56011	160511_QHF_FH_JSI12i_3	93.424	68.866			2.8676	2.8866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8676	2.8866	NaN	1	1	Median	51934000	16923000	35011000	0	0	0	0	0	0	0	0	0	51934000	16923000	35011000	23102	3146	21879	144219	195008	195008			1	
HVQSLEPDPGTPGSER	0	Unmodified	1704.8067	0.80672651	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	27.838	27.012	2;3	6.2385E-05	22713	160511_QHF_FH_JSI11i_2	63.681	53.177			0.12501	0.12537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12501	0.12537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44747000	43622000	1124900	0	0	0	0	0	0	28631000	27506000	1124900	16116000	16116000	0	23103	5091	21880	144220;144221;144222	195009;195010;195011	195010			3	
HVQYLDFLHTVIK	1	Unmodified	1611.8773	0.87731267	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	87.507	87.419	3	0.00011194	75518	160511_QHF_FH_JSI12i_3	89.992	80.213			0.87121	0.80865	15.182	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87121	0.80865	NaN	1	1	Median	0.79711	0.78391	21.321	2	2	Median	102610000	55033000	47573000	0	0	0	0	0	0	16003000	7696600	8306900	86603000	47337000	39267000	23104	2547	21881	144223;144224;144225	195012;195013;195014;195015	195013			4	
HVSAQLER	0	Unmodified	938.49338	0.49337828	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	9.9335	9.794	2	0.0030196	7130	160511_QHF_FH_JSI12i_3	82.426	24.14			0.26563	0.25245	32.973	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22116	0.19995	NaN	1	1	Median	0.31905	0.31874	NaN	1	1	Median	127440000	82094000	45350000	21065000	0	21065000	0	0	0	52194000	44761000	7432500	54185000	37333000	16852000	23105	442	21882	144226;144227;144228;144229	195016;195017;195018;195019	195019			4	
HVSDDMK	1	Unmodified	830.35925	0.35925256	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.26		6	1					1		2	2	2	2	5.8547	4.2693	2	0.0080246	3271	160511_QHF_FH_JSI12i_2	87.323	70.768			0.082305	0.070893	332.57	7	7	Median	0.082305	0.070893	NaN	1	1	Median	0.64596	0.80361	461.09	2	2	Median	0.67071	0.67388	380.15	2	2	Median	1.4162	1.5787	490.63	2	2	Median	2722500000	1717600000	1005000000	410990000	376540000	34449000	831160000	525990000	305170000	378530000	353040000	25489000	1101800000	462000000	639850000	23106	2169	21883	144230;144231;144232;144233;144234;144235;144236;144237	195020;195021;195022;195023;195024;195025;195026;195027	195021			8	
HVSIQEAESYAESVGAK	1	Unmodified	1803.8639	0.86390703	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	64.531	64.115	3	3.8375E-06	56550	160511_QHF_FH_JSI9i_2	86.455	75.821			1.0356	1.0604	210.76	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23309	0.23891	NaN	1	1	Median	4.6009	4.7064	NaN	1	1	Median	133420000	85724000	47695000	0	0	0	0	0	0	96480000	80067000	16413000	36939000	5657500	31282000	23107	5388	21884	144238;144239;144240	195028;195029;195030	195028			3	
HVSNAPLTK	1	Unmodified	965.52943	0.52942943	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.96		7	3						1	2	2	4	3	10.52	9.2853	2	0.00057225	7711	160511_QHF_FH_JSI10i_2	88.496	45.722			0.54874	0.53014	264.52	8	8	Median	10.498	9.086	NaN	1	1	Median	0.26115	0.31717	399.64	2	2	Median	1.1032	1.0356	257.05	3	3	Median	0.068674	0.071444	188.75	2	2	Median	991520000	523180000	468340000	135660000	65798000	69862000	224290000	126160000	98128000	447230000	175150000	272090000	184350000	156080000	28265000	23108	3685	21885	144241;144242;144243;144244;144245;144246;144247;144248;144249;144250;144251	195031;195032;195033;195034;195035;195036;195037;195038;195039;195040;195041	195039			11	
HVSPAGAAVGIPLSEDEAK	1	Unmodified	1846.9425	0.94249171	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		16	4					4		5	5	7	7	54.53	51.859	2;3	7.2292E-26	45514	160511_QHF_FH_JSI10i_2	209.21	185.46			0.47374	0.45215	152.93	21	21	Median	1.4841	1.3001	120.9	5	5	Median	1.1136	1.3093	210.75	4	4	Median	0.37891	0.37355	177.57	6	6	Median	0.33716	0.3564	149.89	6	6	Median	3105500000	1703600000	1401900000	531740000	279920000	251820000	648660000	381680000	266980000	1116400000	599990000	516410000	808700000	442050000	366650000	23109	1381	21886	144252;144253;144254;144255;144256;144257;144258;144259;144260;144261;144262;144263;144264;144265;144266;144267;144268;144269;144270;144271;144272;144273;144274;144275	195042;195043;195044;195045;195046;195047;195048;195049;195050;195051;195052;195053;195054;195055;195056;195057;195058;195059;195060;195061;195062;195063;195064;195065;195066;195067;195068	195061			27	
HVSPLIGR	0	Unmodified	877.51339	0.51338544	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							3	4	2	2	20.977	20.265	2	0.00124	16240	160511_QHF_FH_JSI9i_3	108.92	75.186			1.3451	1.6613	235.77	11	9	Median	0.03783	0.030814	351.83	3	3	Plateau	0.44974	0.55912	201.98	4	3	Median	1.198	1.1058	271.8	2	1	Median	0.89092	0.90302	262.78	2	2	Median	1619700000	929200000	690520000	573730000	282750000	290990000	581390000	352980000	228410000	228190000	156210000	71974000	236400000	137260000	99149000	23110	4806	21887	144276;144277;144278;144279;144280;144281;144282;144283;144284;144285;144286	195069;195070;195071;195072;195073;195074;195075;195076;195077;195078;195079	195074			11	
HVSSTSSSFLEV	0	Unmodified	1278.6092	0.6091959	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			53.114	52.183	2	0.0026408	46114	160511_QHF_FH_JSI10i_2	69.628	56.274			0.49921	0.61999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49921	0.61999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24230000	15049000	9181800	0	0	0	24230000	15049000	9181800	0	0	0	0	0	0	23111	2142	21888	144287	195080	195080			1	
HVTAQQPSR	0	Unmodified	1022.5257	0.52574104	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			5.5036	5.0833	2	0.0032261	3154	160511_QHF_FH_JSI10i_2	71.379	53.394			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24671000	24671000	0	0	0	0	24671000	24671000	0	0	0	0	0	0	0	23112	230	21889	144288	195081	195081			1	
HVTFNQVK	1	Unmodified	971.51886	0.51886475	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.05		5	5						2	1	3	3	5	17.857	16.254	2	0.0008209	9067	160513_QHF_FH_JSI12Kac_6	107.66	73.412			0.91095	0.9922	219.16	12	12	Median	5.053	4.3376	NaN	1	1	Median	0.19093	0.22696	223.4	3	3	Median	9.0374	8.8287	284.63	3	3	Median	0.12762	0.14178	223.16	5	5	Median	3226100000	1489600000	1736500000	192150000	31168000	160980000	383200000	133590000	249610000	1108800000	351090000	757660000	1542000000	973790000	568200000	23113	1226	21890	144289;144290;144291;144292;144293;144294;144295;144296;144297;144298;144299;144300	195082;195083;195084;195085;195086;195087;195088;195089;195090;195091;195092;195093	195092			12	
HVTNPAFTK	1	Unmodified	1013.5294	0.52942943	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	15.644	15.382	2	0.00029014	11899	160511_QHF_FH_JSI12i_3	94.692	88.053			10.319	9.0704	176.73	5	5	Median	10.319	9.0704	NaN	1	1	Median	5.3253	6.5088	NaN	1	1	Median	26.105	24.693	NaN	1	1	Median	7.4947	7.5391	336.6	2	2	Median	315960000	95962000	219990000	32396000	4659100	27737000	27226000	4453400	22773000	60604000	2518800	58085000	195730000	84330000	111400000	23114	3907	21891	144301;144302;144303;144304;144305	195094;195095;195096;195097;195098	195097			5	
HVTSECLGWMR	0	Unmodified	1374.6173	0.61727494	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.115	42.115	2	0.0033937	37106	160511_QHF_FH_JSI11i_3	68.735	61.363			0.54313	0.50643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54313	0.50643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21673000	15658000	6015300	0	0	0	0	0	0	21673000	15658000	6015300	0	0	0	23115	1085	21892	144306	195099	195099			1	
HVTSEQEWDK	1	Unmodified	1257.5626	0.56258006	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		15.319	15.081	2	0.00092468	12146	160511_QHF_FH_JSI11i_2	74.162	49.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23116	1469	21893	144307	195100	195100			1	
HVTTAEGTPGTTDQEGPPPDGPPEK	1	Unmodified	2514.151	0.15104051	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		29.83	29.601	3	0.00104	26496	160511_QHF_FH_JSI11i_1	40.668	37.524			0.27148	0.26031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27148	0.26031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27020000	16569000	10451000	0	0	0	0	0	0	27020000	16569000	10451000	0	0	0	23117	167	21894	144308;144309	195101;195102	195102			2	
HVVAVVLGDVGR	0	Unmodified	1219.7037	0.70370541	4408	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	58.094	51.048	2	8.4159E-07	27827	160513_QHF_FH_JSI10Kac_6	125.48	97.081			7.0837	5.8736	NaN	1	1	Median	7.0837	5.8736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53327000	13359000	39968000	16594000	1264300	15329000	26334000	12094000	14240000	10399000	0	10399000	0	0	0	23118	4408	21895	144310;144311;144312;144313;144314	195103;195104;195105;195106;195107	195106			5	
HVVDGISR	0	Unmodified	881.47191	0.47191456	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.81	10.609	2	0.010742	8122	160511_QHF_FH_JSI11i_2	63.419	37.592			0.22318	0.22189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22318	0.22189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41011000	36530000	4481200	0	0	0	0	0	0	41011000	36530000	4481200	0	0	0	23119	971	21896	144315	195108	195108			1	
HVVFGFVK	1	Unmodified	931.52797	0.52797287	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	3	4	2	2	52.799	47.344	2	0.00072807	39960	160511_QHF_FH_JSI12i_3	122.15	104.17			4.7144	5.5647	203.37	11	10	Median	4.4446	3.5492	266.92	3	3	Median	0.74816	0.87489	165.72	4	3	Median	12.989	12.301	59.031	2	2	Median	22.932	23.25	48.559	2	2	Median	1217100000	419800000	797350000	308840000	117250000	191580000	488780000	272380000	216400000	254960000	23715000	231240000	164570000	6446200	158120000	23120	1685	21897	144316;144317;144318;144319;144320;144321;144322;144323;144324;144325;144326	195109;195110;195111;195112;195113;195114;195115;195116;195117;195118;195119	195116			11	
HVVFGHVK	1	Unmodified	921.51847	0.51847082	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	3	2	3	15.399	14.94	2;3	0.0004269	12259	160511_QHF_FH_JSI9i_3	94.662	89.181			4.7046	4.5086	192.66	9	6	Median	9.1145	7.4735	180.32	3	2	Median	1.8369	2.1573	NaN	1	1	Median	1.0996	1.0492	206.19	2	1	Median	14.45	14.625	296.62	3	2	Plateau	1980600000	543740000	1436800000	456690000	112300000	344390000	198540000	94453000	104090000	357170000	92104000	265060000	968180000	244880000	723300000	23121	1348	21898	144327;144328;144329;144330;144331;144332;144333;144334;144335;144336;144337	195120;195121;195122;195123;195124;195125;195126;195127;195128;195129;195130;195131;195132;195133	195129			14	
HVVFGKVK	2	Unmodified	912.55452	0.55452197	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			16.787	15.725	3	0.046243	12233	160511_QHF_FH_JSI9i_3	32.841	21.967			0.36567	0.3563	197.17	2	2	Median	1.7726	1.4365	NaN	1	1	Median	0.075435	0.088372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83080000	45166000	37914000	55131000	19650000	35481000	27949000	25516000	2433200	0	0	0	0	0	0	23122	2040	21899	144338;144339	195134;195135	195135			2	
HVVFGKVK	2	Acetyl (K)	954.56509	0.56508666	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	37.184	28.135	2;3	0.00091389	15914	160513_QHF_FH_JSI11Kac_6	116.54	66.503			65.6	69.903	42.363	4	4	Median	47.806	42.04	NaN	1	1	Median	50.033	58.632	NaN	1	1	Median	86.01	83.34	NaN	1	1	Median	104.81	111.55	NaN	1	1	Median	647530000	422480000	225060000	55768000	28349000	27419000	173050000	87358000	85692000	304830000	238010000	66823000	113880000	68758000	45123000	23123	2040	21899	144340;144341;144342;144343;144344;144345;144346;144347;144348	195136;195137;195138;195139;195140;195141;195142;195143;195144;195145;195146;195147	195139	2099		12	
HVVFGKVLEGMEVVR	1	Acetyl (K)	1739.9393	0.939261	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.014	74.697	2	0.0011936	41275	160513_QHF_FH_JSI11Kac_6	102.62	85.678			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10754000	10754000	0	0	0	0	0	0	0	10754000	10754000	0	0	0	0	23124	1224	21900	144349	195148	195148	1097		1	
HVVFGQVIK	1	Unmodified	1025.6022	0.60220045	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		2	6						6	3	5	4	2	44.197	39.242	2;3	1.2382E-05	21513	160513_QHF_FH_JSI11Kac_6	114.6	77.582			5.8422	6.6953	176.48	9	8	Median	2.3355	2.0115	461.56	2	2	Median	3.7088	4.356	60.79	2	2	Median	3.8777	3.7274	46.832	3	2	Median	10.012	10.432	29.235	2	2	Median	638960000	77866000	561100000	25373000	12114000	13259000	116420000	19898000	96527000	249190000	35855000	213330000	247980000	9999600	237980000	23125	2276	21901	144350;144351;144352;144353;144354;144355;144356;144357;144358;144359;144360;144361;144362;144363	195149;195150;195151;195152;195153;195154;195155;195156;195157;195158;195159;195160;195161;195162	195153			14	
HVVFIAQR	0	Unmodified	968.55558	0.55558461	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.6		6	12					3	16	12	10	8	7	31.854	26.852	2;3	5.2445E-31	15102	160513_QHF_FH_JSI10Kac_6	196.39	140.95			0.39059	0.35339	357.42	34	30	Median	0.32779	0.27103	365.34	10	9	Median	3.603	4.2189	407.96	9	8	Median	0.47271	0.46474	333.47	8	7	Median	0.072161	0.080004	369.03	7	6	Median	12682000000	6353100000	6329400000	4130100000	1935600000	2194500000	5265500000	2663100000	2602400000	2136500000	1161000000	975550000	1150400000	593410000	556950000	23126	1979	21902	144364;144365;144366;144367;144368;144369;144370;144371;144372;144373;144374;144375;144376;144377;144378;144379;144380;144381;144382;144383;144384;144385;144386;144387;144388;144389;144390;144391;144392;144393;144394;144395;144396;144397;144398;144399;144400	195163;195164;195165;195166;195167;195168;195169;195170;195171;195172;195173;195174;195175;195176;195177;195178;195179;195180;195181;195182;195183;195184;195185;195186;195187;195188;195189;195190;195191;195192;195193;195194;195195;195196;195197;195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208;195209;195210;195211;195212	195209			50	
HVVFTAETHNFPTGVCPFSGATTGTGGR	0	Unmodified	2904.3613	0.36132483	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							2	3			70.529	69.056	3;4	8.7756E-17	57809	160511_QHF_FH_JSI10i_3	98.326	91.893			1.013	1.1708	46.016	5	5	Median	2.1182	1.7597	8.0291	2	2	Median	0.64038	0.75642	29.824	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141390000	78297000	63088000	29538000	7771400	21767000	111850000	70526000	41321000	0	0	0	0	0	0	23127	241	21903	144401;144402;144403;144404;144405	195213;195214;195215;195216;195217;195218;195219;195220;195221	195217			9	
HVVLGAIENK	1	Unmodified	1078.6135	0.61349341	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	4	1	31.307	29.546	2	8.0429E-07	25373	160511_QHF_FH_JSI11i_2	123.21	107.01			18.596	16.43	252.3	2	2	Median	3.1653	2.7597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109.25	97.82	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	291190000	81264000	209930000	31544000	680180	30864000	37464000	0	37464000	180770000	80584000	100190000	41412000	0	41412000	23128	1514	21904	144406;144407;144408;144409;144410;144411;144412	195222;195223;195224;195225;195226;195227;195228;195229;195230	195228			9	
HVVLGAIENKVESK	2	Unmodified	1521.8515	0.85149185	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			43.612	42.053	3	0.012471	34436	160511_QHF_FH_JSI9i_3	46.89	39.345			5.0911	4.825	27.763	2	2	Median	7.3059	5.8716	NaN	1	1	Median	3.5477	3.965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44422000	5314300	39108000	24262000	2543400	21719000	20160000	2770900	17389000	0	0	0	0	0	0	23129	1514	21905	144413;144414	195231;195232	195232			2	
HVVLYPLVAK	1	Unmodified	1137.691	0.69101545	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.37		7	1						1	4	2	2	1	55.818	55.182	2;3	1.0465E-05	47674	160511_QHF_FH_JSI11i_2	114.78	109.62			0.49153	0.61248	215.82	5	5	Median	1.7449	1.5209	NaN	1	1	Median	0.49153	0.61248	NaN	1	1	Median	0.07624	0.077589	238.05	2	2	Median	4.4314	4.424	NaN	1	1	Median	394030000	247560000	146470000	31579000	9557300	22021000	88202000	58797000	29405000	220180000	170860000	49325000	54068000	8345400	45723000	23130	102	21906	144415;144416;144417;144418;144419;144420;144421;144422;144423	195233;195234;195235;195236;195237;195238;195239;195240;195241	195236			9	
HVVQIVEK	1	Unmodified	950.55492	0.5549159	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	18.518	18.337	2	0.007143	14919	160511_QHF_FH_JSI11i_2	69.825	38.535			1.0947	1.0974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0947	1.0974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	103980000	56403000	47576000	0	0	0	0	0	0	86024000	56403000	29621000	17955000	0	17955000	23131	644	21907	144424;144425;144426	195242;195243;195244	195242			3	
HVVQSISTQQEK	1	Unmodified	1382.7154	0.7153923	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.16	2	12	10					8	4	4	10	11	11	15.351	12.184	2;3	6.9913E-07	10459	160511_QHF_FH_JSI11i_3	121.68	102.44			0.13368	0.13391	294.99	20	20	Median	0.0716	0.061033	40.016	3	3	Plateau	0.13276	0.15364	279.94	4	4	Median	0.19218	0.18191	319.76	6	6	Median	4.1609	4.7101	330.38	7	7	Median	5054700000	2672700000	2382100000	238530000	221750000	16777000	779890000	458470000	321420000	1789600000	1006600000	783070000	2246700000	985890000	1260800000	23132	1246	21908	144427;144428;144429;144430;144431;144432;144433;144434;144435;144436;144437;144438;144439;144440;144441;144442;144443;144444;144445;144446;144447;144448;144449;144450;144451;144452;144453;144454;144455;144456;144457;144458;144459;144460;144461;144462	195245;195246;195247;195248;195249;195250;195251;195252;195253;195254;195255;195256;195257;195258;195259;195260;195261;195262;195263;195264;195265;195266;195267;195268;195269;195270;195271;195272;195273;195274;195275;195276;195277;195278;195279;195280;195281;195282	195249			38	
HVVQSISTQQEKETIAK	2	Acetyl (K)	1967.0324	0.032369346	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								5		1	2	1	1	48.814	38.454	3	0.00040719	21374	160513_QHF_FH_JSI11Kac_5	89.358	77.838			20.746	21.278	15.742	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24.8	23.784	NaN	1	1	Median	17.354	19.037	NaN	1	1	Median	14156000	4607900	9548500	1539000	1539000	0	5926900	2962000	2964800	3482500	79855	3402600	3208100	27031	3181000	23133	1246	21909	144463;144464;144465;144466;144467	195283;195284;195285;195286;195287;195288	195285	1142		6	
HVVQSVEK	1	Unmodified	924.50288	0.50288033	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	7.6383	7.2393	2	0.0010359	4915	160511_QHF_FH_JSI11i_2	114.28	67.855			1.7583	1.8147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7583	1.8147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54137000	39153000	14984000	0	0	0	0	0	0	34793000	19808000	14984000	19345000	19345000	0	23134	5459	21910	144468;144469	195289;195290	195290			2	
HVVWHPSQELLASASYDDTVK	1	Unmodified	2381.1652	0.16517443	600	O76071	CIAO1	Probable cytosolic iron-sulfur protein assembly protein CIAO1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	66.932	66.635	3	1.7474E-11	57810	160511_QHF_FH_JSI12i_3	113.17	104.98			1.102	1.1171	2.4483	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.102	1.1171	2.4483	2	0	Median	110560000	60045000	50510000	0	0	0	0	0	0	0	0	0	110560000	60045000	50510000	23135	600	21911	144470;144471;144472;144473;144474;144475	195291;195292;195293;195294;195295;195296;195297;195298	195296			8	
HVYIFGGMTPAGALDTMYQYHTEEQHWTLLK	1	Unmodified	3636.717	0.71699557	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.832	84.112	4	1.0833E-13	47778	160513_QHF_FH_JSI10Kac_6	110.78	100.39			0.44334	0.52425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44334	0.52425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67194000	55094000	12100000	0	0	0	67194000	55094000	12100000	0	0	0	0	0	0	23136	3289	21912	144476	195299	195299			1	
HVYLVTELMR	0	Unmodified	1259.6696	0.66962808	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	68.231	65.271	2	0.0043293	58323	160511_QHF_FH_JSI11i_3	66.27	55.106			17.811	17.109	54.854	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27.321	25.216	NaN	1	1	Median	11.611	11.608	NaN	1	1	Median	82564000	4001900	78562000	8392000	0	8392000	0	0	0	31725000	1170000	30555000	42447000	2831900	39615000	23137	2669	21913	144477;144478;144479	195300;195301;195302	195300			3	
HVYTGGK	1	Unmodified	760.38679	0.38678794	2220	Q04726;Q04724;Q04727	TLE3;TLE1;TLE4	Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	6.8084	6.3098	2	0.012699	2641	160511_QHF_FH_JSI12i_2	73.039	16.529			2.0847	1.7474	181.58	5	5	Median	2.0847	1.7474	NaN	1	1	Median	0.12196	0.14841	NaN	1	1	Median	5.507	5.6076	NaN	1	1	Median	0.79751	0.88544	249.77	2	2	Median	430980000	215190000	215790000	73494000	30796000	42698000	82285000	67773000	14512000	126330000	30315000	96014000	148870000	86309000	62564000	23138	2220	21914	144480;144481;144482;144483;144484	195303;195304;195305;195306;195307	195303			5	
HWDHLTQVK	1	Unmodified	1162.5883	0.5883413	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	24.94	24.927	3	0.012175	20672	160511_QHF_FH_JSI12i_3	43.185	34.484			1.4385	1.4035	45.447	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0764	1.0177	NaN	1	1	Median	1.9225	1.9354	NaN	1	1	Median	77469000	31315000	46154000	0	0	0	0	0	0	25567000	11201000	14366000	51902000	20114000	31788000	23139	1341	21915	144485;144486	195308;195309	195309			2	
HWDQNER	0	Unmodified	983.42094	0.42094162	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2								1	5	4	8.2941	7.9353	2	0.0027935	4070	160511_QHF_FH_JSI12i_3	108.7	52.15			0.8083	0.84071	34.23	8	2	Median	NaN	NaN	NaN	0	0	Median	0.51688	0.62019	NaN	1	0	Median	0.60866	0.62175	13.696	3	2	Median	1.0489	1.1016	23.059	4	0	Median	1077800000	535410000	542380000	0	0	0	149370000	80605000	68762000	291010000	172150000	118860000	637420000	282660000	354760000	23140	895	21916	144487;144488;144489;144490;144491;144492;144493;144494;144495;144496	195310;195311;195312;195313;195314;195315;195316;195317;195318;195319;195320	195320			11	
HWELTAEGEEIAR	0	Unmodified	1539.7318	0.73177065	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		4									2	2		52.646	51.85	2;3	0.00045057	44652	160511_QHF_FH_JSI11i_2	69.979	55.289			1.4131	1.4727	32.772	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.76839	0.95197	13.888	2	1	Median	1.6463	1.6361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82188000	35340000	46848000	0	0	0	39434000	22175000	17258000	42754000	13165000	29589000	0	0	0	23141	5502	21917	144497;144498;144499;144500	195321;195322;195323;195324	195321			2	
HWGGNVLGPK	1	Unmodified	1063.5563	0.55631289	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.76		11	28						13	14	13	12	13	33.369	30.374	2;3	1.5668E-09	25147	160511_QHF_FH_JSI9i_3	133.55	118.11			0.62596	0.60803	222	45	38	Median	0.69671	0.58635	106.84	12	9	Median	0.62596	0.75125	205.7	11	9	Median	0.42848	0.42264	269.23	11	10	Median	1.5769	1.7267	275.66	11	10	Median	21171000000	9385000000	11786000000	4865100000	2215600000	2649400000	5485100000	1910300000	3574800000	4401100000	2128700000	2272400000	6419800000	3130300000	3289600000	23142	2007	21918	144501;144502;144503;144504;144505;144506;144507;144508;144509;144510;144511;144512;144513;144514;144515;144516;144517;144518;144519;144520;144521;144522;144523;144524;144525;144526;144527;144528;144529;144530;144531;144532;144533;144534;144535;144536;144537;144538;144539;144540;144541;144542;144543;144544;144545;144546;144547;144548;144549;144550;144551;144552	195325;195326;195327;195328;195329;195330;195331;195332;195333;195334;195335;195336;195337;195338;195339;195340;195341;195342;195343;195344;195345;195346;195347;195348;195349;195350;195351;195352;195353;195354;195355;195356;195357;195358;195359;195360;195361;195362;195363;195364;195365;195366;195367;195368;195369;195370;195371;195372;195373;195374;195375;195376;195377;195378;195379;195380;195381;195382;195383;195384;195385;195386;195387;195388;195389;195390;195391;195392;195393;195394	195347			70	
HWIASGQTLLQASQQDLEK	1	Unmodified	2152.0913	0.091281208	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			74.436	72.982	3	2.2275E-18	61189	160511_QHF_FH_JSI10i_3	186.75	177.16			0.96111	0.93503	118.37	2	2	Median	2.5748	2.1594	NaN	1	1	Median	0.35875	0.40487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43811000	29158000	14653000	12349000	3124700	9224800	31462000	26033000	5428500	0	0	0	0	0	0	23143	3353	21919	144553;144554	195395;195396	195395			2	
HWILPQDYDHAQAEAR	0	Unmodified	1948.918	0.91800829	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.39		2	11						8	2	3	5	11	54.041	50.587	2;3;4	2.6381E-33	27000	160513_QHF_FH_JSI10Kac_6	170.16	154.28			1.0651	1.1163	35.504	20	6	Median	1.2987	1.1382	7.0628	2	1	Median	0.61362	0.75692	41.184	3	1	Median	1.0076	0.98183	35.543	5	1	Median	1.0651	1.1559	38.954	10	3	Median	2234400000	1017400000	1217000000	58826000	26395000	32431000	132070000	73347000	58721000	729070000	296100000	432970000	1314400000	621570000	692850000	23144	2652	21920	144555;144556;144557;144558;144559;144560;144561;144562;144563;144564;144565;144566;144567;144568;144569;144570;144571;144572;144573;144574;144575	195397;195398;195399;195400;195401;195402;195403;195404;195405;195406;195407;195408;195409;195410;195411;195412;195413;195414;195415;195416;195417;195418;195419;195420;195421;195422	195421			22	
HWLDSPWPGFFTLDGQPR	0	Unmodified	2155.0276	0.02755874	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		1		2	92.289	84.088	3	4.0604E-05	48940	160513_QHF_FH_JSI10Kac_6	138.91	129.16			0.76041	0.82287	80.382	3	3	Median	NaN	NaN	NaN	0	0	Median	0.32614	0.3909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1813	1.2661	60.944	2	2	Median	93173000	55238000	37934000	0	0	0	40115000	28651000	11464000	0	0	0	53058000	26587000	26471000	23145	2185	21921	144576;144577;144578	195423;195424;195425	195425			3	
HWLFSPFK	1	Unmodified	1060.5494	0.54943659	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	78.791	69.412	2	0.00090853	38026	160513_QHF_FH_JSI11Kac_6	104.21	64.991			1.1405	1.1668	33.162	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5365	1.4751	NaN	1	0	Median	0.84657	0.92287	NaN	1	0	Median	46544000	21121000	25423000	0	0	0	0	0	0	30102000	12622000	17480000	16442000	8498900	7943500	23146	1476	21922	144579;144580	195426;195427	195426			2	
HWLLVYAR	0	Unmodified	1056.5869	0.58688473	1819	P54198	HIRA	Protein HIRA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	1	4	1		65.326	56.807	2;3	0.00014178	31298	160513_QHF_FH_JSI10Kac_6	132.8	105.84			0.42408	0.46788	69.659	5	5	Median	NaN	NaN	NaN	0	0	Median	0.56984	0.67144	75.451	4	4	Median	0.42408	0.41697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	307900000	205780000	102120000	2128600	0	2128600	261910000	182470000	79448000	43856000	23314000	20542000	0	0	0	23147	1819	21923	144581;144582;144583;144584;144585;144586	195428;195429;195430;195431;195432;195433	195433			6	
HWPFMVVNDAGRPK	1	Unmodified	1652.8246	0.8245656	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		8	32						8	18	16	7	7	65.004	62.413	2;3;4	2.7827E-37	31910	160513_QHF_FH_JSI10Kac_6	177.81	169.43			0.74936	0.73792	43.706	43	12	Median	0.82511	0.67063	35.57	16	9	Median	0.63371	0.73283	52.136	15	2	Median	0.91905	0.88155	47.228	6	0	Median	0.9671	1.0069	42.539	6	1	Median	9421300000	4930700000	4490600000	2212800000	1000500000	1212300000	3812800000	1968400000	1844400000	2858700000	1668300000	1190400000	536970000	293480000	243480000	23148	985	21924	144587;144588;144589;144590;144591;144592;144593;144594;144595;144596;144597;144598;144599;144600;144601;144602;144603;144604;144605;144606;144607;144608;144609;144610;144611;144612;144613;144614;144615;144616;144617;144618;144619;144620;144621;144622;144623;144624;144625;144626;144627;144628;144629;144630;144631;144632;144633;144634	195434;195435;195436;195437;195438;195439;195440;195441;195442;195443;195444;195445;195446;195447;195448;195449;195450;195451;195452;195453;195454;195455;195456;195457;195458;195459;195460;195461;195462;195463;195464;195465;195466;195467;195468;195469;195470;195471;195472;195473;195474;195475;195476;195477;195478;195479;195480;195481;195482;195483;195484;195485;195486;195487;195488;195489;195490;195491;195492;195493;195494;195495;195496;195497;195498;195499;195500;195501;195502;195503;195504;195505;195506;195507;195508;195509;195510;195511;195512;195513;195514;195515;195516;195517;195518;195519;195520	195517			86	
HWPFMVVNDAGRPK	1	Oxidation (M)	1668.8195	0.81948022	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			10						6	11	2	2	1	57.159	52.932	3;4	2.8032E-06	44359	160511_QHF_FH_JSI9i_3	86.803	79.395			0.83157	0.73072	35.294	13	7	Median	0.83118	0.67822	29.426	8	6	Median	0.6043	0.70376	90.347	2	0	Median	0.94646	0.89327	3.0103	2	1	Median	0.67451	0.73072	NaN	1	0	Median	785410000	380350000	405060000	340720000	159340000	181380000	213690000	105600000	108090000	203630000	96154000	107470000	27379000	19259000	8120300	23149	985	21924	144635;144636;144637;144638;144639;144640;144641;144642;144643;144644;144645;144646;144647;144648;144649;144650	195521;195522;195523;195524;195525;195526;195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538	195529		563	16	
HWPFQVINDGDK	1	Unmodified	1454.6943	0.69426293	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0			By MS/MS		3	0			3									3		64.315	64.315	2;3	0.0013927	57440	160511_QHF_FH_JSI11i_3	55.261	31.656			0.79511	0.72971	4.0661	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79511	0.72971	4.0661	2	2	Median	NaN	NaN	NaN	0	0	Median	69075000	37572000	31503000	0	0	0	0	0	0	69075000	37572000	31503000	0	0	0	23150	954	21925	144651;144652;144653	195539;195540;195541	195541			3	
HWPFQVINDGDKPK	2	Unmodified	1679.842	0.8419898	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	2.34		15	47						2	15	28	13	8	61.414	60.059	2;3;4	7.3124E-41	50536	160511_QHF_FH_JSI11i_3	208.68	204.5			0.78452	0.79304	32.718	50	16	Median	0.99203	0.79736	27.242	14	4	Median	0.66111	0.77754	30.634	24	9	Median	0.90524	0.88452	52.374	8	3	Median	0.66052	0.6555	25.174	4	0	Linear	15997000000	8005400000	7991500000	2618600000	1297900000	1320700000	6293000000	3583000000	2710000000	4645400000	1785300000	2860100000	2440000000	1339200000	1100700000	23151	954	21926	144654;144655;144656;144657;144658;144659;144660;144661;144662;144663;144664;144665;144666;144667;144668;144669;144670;144671;144672;144673;144674;144675;144676;144677;144678;144679;144680;144681;144682;144683;144684;144685;144686;144687;144688;144689;144690;144691;144692;144693;144694;144695;144696;144697;144698;144699;144700;144701;144702;144703;144704;144705;144706;144707;144708;144709;144710;144711;144712;144713;144714;144715;144716;144717	195542;195543;195544;195545;195546;195547;195548;195549;195550;195551;195552;195553;195554;195555;195556;195557;195558;195559;195560;195561;195562;195563;195564;195565;195566;195567;195568;195569;195570;195571;195572;195573;195574;195575;195576;195577;195578;195579;195580;195581;195582;195583;195584;195585;195586;195587;195588;195589;195590;195591;195592;195593;195594;195595;195596;195597;195598;195599;195600;195601;195602;195603;195604;195605;195606;195607;195608;195609;195610;195611;195612;195613;195614;195615;195616;195617;195618;195619;195620;195621;195622;195623;195624;195625;195626;195627;195628;195629;195630;195631;195632;195633;195634;195635;195636;195637;195638;195639;195640;195641;195642;195643;195644;195645;195646;195647;195648;195649;195650;195651;195652;195653;195654;195655;195656;195657;195658;195659;195660;195661;195662;195663;195664;195665;195666;195667;195668	195551			124	
HWPTFISDIVGASR	0	Unmodified	1584.8049	0.80487601	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			95.466	94.526	3	0.0024035	77645	160511_QHF_FH_JSI9i_3	48.527	42.867			1.0055	1.0354	54.251	2	0	Median	1.7435	1.5195	NaN	1	0	Median	0.57986	0.7055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11901000	6342800	5558000	4957800	1573500	3384300	6943100	4769300	2173800	0	0	0	0	0	0	23152	231	21927	144718;144719	195669;195670	195670			1	
HWQEITFNLPVK	1	Unmodified	1510.7932	0.79324869	5705	Q9Y672	ALG6	Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	78.815	78.229	3	0.00013908	67615	160511_QHF_FH_JSI12i_3	81.92	70.001			2.2366	2.3659	102.66	4	4	Median	3.4829	2.9421	NaN	1	1	Median	2.1109	2.4901	NaN	1	1	Median	2.3699	2.248	NaN	1	1	Median	0.31225	0.33042	NaN	1	1	Median	55082000	19245000	35837000	7604100	1125600	6478500	17488000	2689500	14799000	16857000	6044900	10812000	13132000	9384800	3747600	23153	5705	21928	144720;144721;144722;144723;144724	195671;195672;195673;195674;195675;195676	195676			6	
HWVAPGGPYSAETPGVPSPIAALK	1	Unmodified	2401.243	0.24303082	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	84.219	84.098	3	2.0971E-09	73073	160511_QHF_FH_JSI12i_3	96.55	89.294			1.176	1.1022	62.033	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.176	1.1022	NaN	1	1	Median	0.88773	0.89925	86.14	2	2	Median	146190000	76031000	70163000	0	0	0	0	0	0	43349000	21009000	22340000	102840000	55022000	47822000	23154	3391	21929	144725;144726;144727	195677;195678;195679	195679			3	
HWVVIVAGSNGWYNYR	0	Unmodified	1919.9431	0.94310083	4280	Q99538	LGMN	Legumain	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.832	73.084	3	3.3104E-24	39904	160513_QHF_FH_JSI10Kac_6	159.66	153.53			0.77541	0.9304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77541	0.9304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40792000	24014000	16778000	0	0	0	40792000	24014000	16778000	0	0	0	0	0	0	23155	4280	21930	144728	195680	195680			1	
HYAMQEAK	1	Unmodified	976.44365	0.44365089	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	8.9328	8.4901	2	0.00018262	6238	160511_QHF_FH_JSI12i_2	136.16	109.55			1.4933	1.2627	100.41	7	7	Median	0.80454	0.68568	86.356	2	2	Median	2.041	2.4943	NaN	1	1	Median	0.76186	0.77108	123.22	2	2	Median	0.73201	0.82066	159.16	2	2	Median	760780000	427150000	333620000	150510000	85743000	64767000	86021000	39175000	46846000	312360000	166450000	145910000	211890000	135780000	76106000	23156	2524	21931	144729;144730;144731;144732;144733;144734;144735	195681;195682;195683;195684;195685;195686;195687	195682			7	
HYAMQEAK	1	Oxidation (M)	992.43857	0.43856552	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	8.9571	8.5148	2	0.025467	6304	160511_QHF_FH_JSI9i_2	49.097	38.629			0.92044	0.76483	20.68	3	1	Plateau	0.92044	0.76483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61101	0.61302	NaN	1	1	Median	0.83757	0.92672	NaN	1	0	Median	71636000	40279000	31356000	25431000	13217000	12214000	0	0	0	25227000	16460000	8767100	20977000	10603000	10375000	23157	2524	21931	144736;144737;144738	195688;195689	195688			2	
HYAQAYYGWSLR	0	Unmodified	1513.7102	0.71024735	960	P0DPD7			yes	yes	0	0	0	0		By MS/MS			16	0									1		1			60.701	52.302	2	0.016233	28753	160513_QHF_FH_JSI10Kac_6	58.37	48.937			3.5785	4.2245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.5785	4.2245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34842000	6966000	27876000	0	0	0	34842000	6966000	27876000	0	0	0	0	0	0	23158	960	21932	144739	195690	195690			1	
HYASEEIK	1	Unmodified	975.46616	0.46616048	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		9.3888	9.1903	2	0.007852	6735	160511_QHF_FH_JSI11i_2	68.214	47.06			3.4357	3.4098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4357	3.4098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54242000	12220000	42022000	0	0	0	0	0	0	54242000	12220000	42022000	0	0	0	23159	2162	21933	144740	195691	195691			1	
HYCTVANPVSR	0	Unmodified	1302.6139	0.61390412	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		20.327	20.327	2	0.051039	17064	160511_QHF_FH_JSI11i_3	43.282	31.792			6.0719	5.6351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.0719	5.6351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15929000	1040800	14888000	0	0	0	0	0	0	15929000	1040800	14888000	0	0	0	23160	2573	21934	144741	195692	195692			1	
HYDLESVPMTWDPVDQNPR	0	Unmodified	2298.0375	0.037531078	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	81.087	72.602	3	4.0308E-13	39211	160513_QHF_FH_JSI9Kac_6	123.14	112.32			0.8844	0.93233	14.381	5	2	Median	1.0757	0.90901	NaN	1	0	Median	0.86489	1.0201	NaN	1	0	Median	1.1573	1.1107	NaN	1	0	Median	0.7963	0.83996	14.754	2	2	Median	573290000	298970000	274320000	141840000	62930000	78907000	169140000	90835000	78310000	108900000	58778000	50122000	153410000	86424000	66984000	23161	4856	21935	144742;144743;144744;144745;144746	195693;195694;195695;195696;195697;195698	195694			6	
HYDLESVPMTWDPVDQNPR	0	Oxidation (M)	2314.0324	0.0324457	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				76.559	67.956	3	4.2101E-05	36479	160513_QHF_FH_JSI9Kac_6	116.96	104.65			2.1845	1.8608	NaN	1	1	Median	2.1845	1.8608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18720000	6254800	12465000	18720000	6254800	12465000	0	0	0	0	0	0	0	0	0	23162	4856	21935	144747	195699	195699		2542	1	
HYDLNQLLEPR	0	Unmodified	1396.7099	0.709913	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	65.531	64.637	3	0.00013416	56333	160511_QHF_FH_JSI11i_2	57.164	51.849			1.1846	1.2227	9.3348	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86033	1.0445	NaN	1	0	Median	1.1846	1.2283	NaN	1	0	Median	0.98953	1.0454	NaN	1	0	Median	80474000	34669000	45806000	0	0	0	20977000	9141900	11835000	35912000	14100000	21812000	23586000	11427000	12159000	23163	1790	21936	144748;144749;144750	195700;195701	195700			2	
HYEDGYPGGSDNYGSLSR	0	Unmodified	1972.8187	0.81874776	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.08	35.646	3	0.0030005	30397	160511_QHF_FH_JSI11i_2	45.257	39.353			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23164	442	21937	144751	195702	195702			1	
HYEMLANR	0	Unmodified	1032.4811	0.48109903	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				20.071	19.142	2	0.011364	16349	160511_QHF_FH_JSI9i_2	72.492	45.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16313000	0	16313000	16313000	0	16313000	0	0	0	0	0	0	0	0	0	23165	2675	21938	144752	195703	195703			1	
HYEVEILDAK	1	Unmodified	1215.6136	0.61355299	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							3	1	1	1	49.151	48.167	2	5.5482E-18	42220	160511_QHF_FH_JSI9i_2	150.08	112.88			0.67814	0.70677	11.989	4	0	Median	0.67888	0.59728	NaN	1	0	Median	0.5824	0.72103	NaN	1	0	Median	0.67739	0.69279	NaN	1	0	Median	0.7091	0.7974	NaN	1	0	Median	1307800000	651400000	656450000	129040000	84441000	44599000	363670000	188410000	175260000	473210000	213430000	259780000	341920000	165120000	176810000	23166	5141	21939	144753;144754;144755;144756;144757;144758	195704;195705;195706;195707;195708;195709;195710;195711;195712;195713;195714	195710			11	
HYFIEVNSR	0	Unmodified	1163.5724	0.57235688	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	1	4	4	43.092	37.471	2;3	2.7839E-05	32039	160511_QHF_FH_JSI12i_3	103.42	79.399			0.88357	0.85595	55.731	10	3	Median	1.2241	1.0347	20.098	2	0	Median	0.61049	0.71667	NaN	1	0	Median	0.82529	0.81618	42.232	3	2	Median	0.76502	0.79482	84.65	4	1	Median	321540000	157320000	164220000	18344000	8174600	10169000	23881000	13127000	10754000	139220000	67424000	71791000	140100000	68594000	71510000	23167	1002	21940	144759;144760;144761;144762;144763;144764;144765;144766;144767;144768;144769	195715;195716;195717;195718;195719;195720;195721;195722;195723;195724;195725;195726	195722			12	
HYFQNTQGLIFVVDSNDRER	0	Unmodified	2437.1775	0.17747045	2125;1944;1137;2126	P61204;P84077;P18085;P84085	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	73.927	65.301	3;4	5.8234E-57	35836	160513_QHF_FH_JSI10Kac_6	193.22	174.92			0.92688	0.8658	52.386	6	2	Median	0.81365	0.68723	NaN	1	0	Median	0.4437	0.52638	44.7	2	1	Median	1.0559	1.0382	NaN	1	0	Median	1.3874	1.4836	10.388	2	1	Median	579980000	271310000	308670000	163850000	64460000	99394000	280580000	153740000	126850000	43858000	23264000	20594000	91687000	29848000	61840000	23168	1944;2125;1137;2126	21941	144770;144771;144772;144773;144774;144775	195727;195728;195729;195730;195731;195732;195733;195734;195735	195733			9	
HYGCPQCGKDFSIKAELTKHRR	3	Acetyl (K)	2729.3279	0.32785664	2893	Q5JNZ3	ZNF311	Zinc finger protein 311	yes	yes	1	0	0	4	By MS/MS				16	0									1	1				99.19	90.044	4	0.019375	51912	160513_QHF_FH_JSI9Kac_6	31.488	17.807			0.98823	0.84444	NaN	1	0	Median	0.98823	0.84444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	515210000	241920000	273290000	515210000	241920000	273290000	0	0	0	0	0	0	0	0	0	23169	2893	21942	144776	195736	195736	2707		1	
HYGEHVCTAK	1	Unmodified	1200.5346	0.53459117	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.2895	7.3872	3	0.014181	4869	160511_QHF_FH_JSI12i_3	40.154	31.2			2.6822	2.9184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6822	2.9184	NaN	1	1	Median	9702500	2722800	6979700	0	0	0	0	0	0	0	0	0	9702500	2722800	6979700	23170	4361	21943	144777	195737	195737			1	
HYGFNEILK	1	Unmodified	1119.5713	0.57129425	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.965	50.573	2	0.0096752	43340	160511_QHF_FH_JSI12i_2	50.834	32.059			0.4805	0.52312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4805	0.52312	NaN	1	0	Median	57688000	35049000	22640000	0	0	0	0	0	0	0	0	0	57688000	35049000	22640000	23171	3699	21944	144778	195738	195738			1	
HYGFQLYQSDPSGNYGGWK	1	Unmodified	2202.9759	0.9759171	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.35		1	12						8	1	2	7	11	71.311	67.598	2;3	5.4909E-71	36155	160513_QHF_FH_JSI10Kac_6	262.29	241.63			0.96471	1.0031	29.331	17	5	Median	1.1869	1.0031	NaN	1	0	Median	0.9732	1.1414	5.4556	2	0	Median	1.092	1.0286	38.981	6	2	Median	0.86826	0.88861	28.8	8	3	Median	2550800000	1134700000	1416000000	163120000	66041000	97079000	674730000	309140000	365600000	637420000	274820000	362600000	1075500000	484740000	590740000	23172	1267	21945	144779;144780;144781;144782;144783;144784;144785;144786;144787;144788;144789;144790;144791;144792;144793;144794;144795;144796;144797;144798;144799	195739;195740;195741;195742;195743;195744;195745;195746;195747;195748;195749;195750;195751;195752;195753;195754;195755;195756;195757;195758;195759;195760;195761;195762;195763;195764;195765;195766;195767;195768;195769;195770;195771;195772;195773;195774;195775	195774			37	
HYGGLTGLNK	1	Unmodified	1058.5509	0.55089316	1144	P18669;Q8N0Y7;P15259	PGAM1;PGAM4;PGAM2	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.49	5.59		15	17						9	10	9	11	11	26.786	24.218	2;3	6.928E-13	21115	160511_QHF_FH_JSI10i_2	194.9	169			0.26289	0.3041	212.49	40	37	Median	0.76132	0.62446	214.54	10	9	Median	0.34181	0.39067	179.81	9	7	Median	0.20088	0.19435	242.5	11	11	Median	0.18526	0.20573	233.61	10	10	Median	33045000000	15954000000	17091000000	2695800000	1116800000	1579100000	4967800000	2976000000	1991800000	11716000000	5650800000	6065400000	13665000000	6210000000	7455200000	23173	1144	21946	144800;144801;144802;144803;144804;144805;144806;144807;144808;144809;144810;144811;144812;144813;144814;144815;144816;144817;144818;144819;144820;144821;144822;144823;144824;144825;144826;144827;144828;144829;144830;144831;144832;144833;144834;144835;144836;144837;144838;144839;144840	195776;195777;195778;195779;195780;195781;195782;195783;195784;195785;195786;195787;195788;195789;195790;195791;195792;195793;195794;195795;195796;195797;195798;195799;195800;195801;195802;195803;195804;195805;195806;195807;195808;195809;195810;195811;195812;195813;195814;195815;195816;195817;195818;195819;195820;195821;195822;195823;195824;195825;195826;195827;195828	195812			53	
HYGGLTGLNKAETAAK	2	Acetyl (K)	1671.858	0.8580338	1144	P18669;Q8N0Y7;P15259	PGAM1;PGAM4;PGAM2	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4;Phosphoglycerate mutase 2	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	1	4	4	4	52.716	43.384	2;3	0.00041862	23900	160513_QHF_FH_JSI10Kac_6	87.647	69.051			0.52635	0.5679	290.17	6	6	Median	NaN	NaN	NaN	0	0	Median	0.62568	0.73808	281.72	2	2	Median	0.22341	0.21905	379.37	2	2	Median	0.3153	0.34016	427.31	2	2	Median	198880000	111670000	87203000	13482000	13482000	0	64968000	28927000	36041000	67734000	45060000	22674000	52692000	24204000	28488000	23174	1144	21947	144841;144842;144843;144844;144845;144846;144847;144848;144849;144850;144851;144852;144853	195829;195830;195831;195832;195833;195834;195835;195836;195837;195838;195839;195840;195841	195841	1002;1005		13	
HYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGK	2	Unmodified	3708.8035	0.80350239	1569	P45877	PPIC	Peptidyl-prolyl cis-trans isomerase C	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			94.494	88.774	4	2.0171E-17	51051	160513_QHF_FH_JSI10Kac_6	118.05	108.19			0.72916	0.86336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72916	0.86336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100410000	81158000	19253000	0	0	0	100410000	81158000	19253000	0	0	0	0	0	0	23175	1569	21948	144854	195842	195842			1	
HYGITSPISLAAPK	1	Unmodified	1453.7929	0.79291434	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.17	0.373		5	1							1		3	2	61.699	61.041	2;3	0.00061683	52804	160511_QHF_FH_JSI12i_2	68.171	63.457			1.3404	1.3264	74.501	5	5	Median	3.3298	2.8295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3404	1.3264	90.15	3	3	Median	0.96103	1.0478	NaN	1	1	Median	177110000	81433000	95678000	10413000	2243700	8169500	0	0	0	128390000	57116000	71272000	38309000	22073000	16236000	23176	1724	21949	144855;144856;144857;144858;144859;144860	195843;195844;195845;195846;195847;195848;195849	195844			7	
HYGPGWVSMANAGK	1	Oxidation (M)	1489.6772	0.67723266	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	5	4	3	3	34.937	31.404	2;3	1.48E-05	27323	160511_QHF_FH_JSI11i_3	127.42	113.22			1.414	0.74011	45.224	12	3	Linear	1.0558	0.84288	40.927	3	0	Median	0.90661	1.0415	15.828	3	0	Median	1.1899	1.1471	49.736	3	2	Plateau	0.58382	0.63603	45.652	3	1	Median	2534200000	999760000	1534400000	609550000	206830000	402720000	745640000	318890000	426740000	775250000	287100000	488150000	403750000	186940000	216810000	23177	1224	21950	144861;144862;144863;144864;144865;144866;144867;144868;144869;144870;144871;144872;144873;144874;144875	195850;195851;195852;195853;195854;195855;195856;195857;195858;195859;195860;195861;195862;195863;195864;195865;195866;195867;195868;195869;195870;195871;195872;195873;195874;195875;195876;195877;195878;195879;195880	195855		856	31	
HYGPGWVSMANAGK	1	Unmodified	1473.6823	0.68231804	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.63	4.73		11	24						6	11	13	10	7	47.37	45.002	2;3	2.6917E-31	39373	160511_QHF_FH_JSI11i_3	164.64	143.77			0.90286	0.86445	92.091	35	19	Median	0.87037	0.71161	56.434	10	4	Median	0.80055	0.94833	118.07	10	3	Median	1.138	1.114	77.985	8	6	Median	0.81372	0.84422	104.51	7	6	Median	42016000000	15038000000	26978000000	6335700000	2581700000	3754000000	8026800000	2945100000	5081700000	19708000000	5810000000	13898000000	7945600000	3700800000	4244900000	23178	1224	21950	144876;144877;144878;144879;144880;144881;144882;144883;144884;144885;144886;144887;144888;144889;144890;144891;144892;144893;144894;144895;144896;144897;144898;144899;144900;144901;144902;144903;144904;144905;144906;144907;144908;144909;144910;144911;144912;144913;144914;144915;144916	195881;195882;195883;195884;195885;195886;195887;195888;195889;195890;195891;195892;195893;195894;195895;195896;195897;195898;195899;195900;195901;195902;195903;195904;195905;195906;195907;195908;195909;195910;195911;195912;195913;195914;195915;195916;195917;195918;195919;195920;195921;195922;195923;195924;195925;195926;195927;195928;195929;195930;195931;195932;195933;195934;195935;195936;195937;195938;195939;195940;195941;195942;195943;195944;195945;195946;195947;195948;195949;195950;195951;195952;195953;195954;195955;195956;195957;195958;195959;195960;195961;195962;195963;195964	195892			82	
HYGYSLYSAIK	1	Unmodified	1300.6452	0.64518747	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	2	2	4	3	56.049	48.366	2;3	4.4617E-12	26258	160513_QHF_FH_JSI11Kac_6	147.75	117.5			1.0976	1.1294	83.275	11	9	Median	1.7015	1.4648	123.33	2	1	Median	0.9537	1.1281	110.21	2	2	Median	1.2578	1.2127	87.688	4	4	Median	1.0976	1.1294	95	3	2	Median	443350000	230260000	213090000	52295000	17464000	34831000	74707000	39153000	35554000	161000000	94031000	66968000	155350000	79611000	75737000	23179	1018	21951	144917;144918;144919;144920;144921;144922;144923;144924;144925;144926;144927	195965;195966;195967;195968;195969;195970;195971;195972;195973;195974;195975;195976	195967			12	
HYIFNPR	0	Unmodified	945.48209	0.48208531	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			28.638	27.285	2	0.001004	22707	160511_QHF_FH_JSI10i_3	138.38	102.5			0.60664	0.58607	76.6	2	2	Median	1.2429	1.0074	NaN	1	1	Median	0.29609	0.34097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117220000	77714000	39509000	65142000	39990000	25151000	52081000	37724000	14357000	0	0	0	0	0	0	23180	5135	21952	144928;144929	195977;195978;195979	195977			3	
HYILDLLR	0	Unmodified	1041.5971	0.59711507	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	71.555	71.407	2	0.0012375	63567	160511_QHF_FH_JSI11i_3	92.187	66.45			0.80152	0.78676	8.151	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89204	0.83344	NaN	1	0	Median	0.72019	0.7427	NaN	1	0	Median	172960000	79168000	93787000	0	0	0	0	0	0	73725000	31219000	42507000	99230000	47950000	51280000	23181	485	21953	144930;144931	195980	195980			1	
HYILNGSK	1	Unmodified	930.49232	0.49231565	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.451	13.488	2	0.007852	10419	160511_QHF_FH_JSI12i_3	68.214	40.689			3.2851	3.2113	14.624	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0343	2.8958	NaN	1	1	Median	3.5565	3.5611	NaN	1	1	Median	137110000	29874000	107240000	0	0	0	0	0	0	61368000	17001000	44367000	75743000	12873000	62870000	23182	4777	21954	144932;144933	195981;195982	195982			2	
HYIVLLASAPTEK	1	Unmodified	1440.7977	0.79766537	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			4						16	4	4	6	6	63.956	56.613	2;3	8.9392E-08	30950	160513_QHF_FH_JSI10Kac_6	147.74	121.07			0.56914	0.58491	170.79	17	17	Median	0.62727	0.53286	175.84	4	4	Median	0.15598	0.18036	218.5	3	3	Median	2.8501	2.752	187.32	6	6	Median	0.46965	0.47174	161.42	4	4	Median	865250000	506400000	358850000	153880000	72742000	81139000	198840000	105490000	93355000	210160000	89765000	120400000	302370000	238410000	63959000	23183	1724	21955	144934;144935;144936;144937;144938;144939;144940;144941;144942;144943;144944;144945;144946;144947;144948;144949;144950;144951;144952;144953	195983;195984;195985;195986;195987;195988;195989;195990;195991;195992;195993;195994;195995;195996;195997;195998;195999;196000;196001;196002	196000			20	
HYIYVVR	0	Unmodified	948.51814	0.51813647	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	36.453	27.448	2	9.7821E-09	15465	160513_QHF_FH_JSI10Kac_6	150.89	104.86			0.86403	0.94935	73.704	5	4	Median	NaN	NaN	NaN	0	0	Median	0.88607	1.059	103.39	2	2	Median	1.4548	1.3971	98.897	2	2	Median	0.86403	0.94935	NaN	1	0	Median	68009000	31956000	36054000	0	0	0	38517000	19596000	18921000	21616000	8043900	13572000	7876400	4316200	3560200	23184	135	21956	144954;144955;144956;144957;144958	196003;196004;196005;196006;196007	196007			5	
HYLDFINHYANLFHEK	1	Unmodified	2059.9904	0.99044495	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.588	93.565	4	0.056841	81106	160511_QHF_FH_JSI12i_3	22.154	16.123			4.4659	4.8348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4659	4.8348	NaN	1	1	Median	5893100	571590	5321500	0	0	0	0	0	0	0	0	0	5893100	571590	5321500	23185	2517	21957	144959	196008	196008			1	
HYLFYDGESVSGK	1	Unmodified	1500.6885	0.68850885	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	6.37		14	4						8	7	5	7	7	52.175	48.815	2;3	3.1932E-17	42266	160511_QHF_FH_JSI11i_2	215.89	196.13			0.90925	0.97168	86.333	18	16	Median	2.0315	1.7453	74.112	4	4	Linear	0.64651	0.79061	69.459	3	3	Plateau	0.84362	0.81647	92.451	6	5	Median	0.62231	0.68636	114.91	5	4	Median	2138900000	1031500000	1107400000	284070000	107130000	176950000	445280000	260400000	184880000	812190000	419890000	392300000	597320000	244050000	353270000	23186	525	21958	144960;144961;144962;144963;144964;144965;144966;144967;144968;144969;144970;144971;144972;144973;144974;144975;144976;144977;144978;144979;144980;144981;144982;144983;144984;144985	196009;196010;196011;196012;196013;196014;196015;196016;196017;196018;196019;196020;196021;196022;196023;196024;196025;196026;196027;196028;196029;196030;196031;196032;196033;196034;196035;196036;196037;196038;196039;196040;196041;196042;196043	196029			35	
HYLLAAVNR	0	Unmodified	1055.5876	0.58761301	3547	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			39.434	34.397	2	0.0012814	19061	160513_QHF_FH_JSI10Kac_6	88.643	73.867			0.37949	0.36844	45.286	2	2	Median	0.62678	0.50751	NaN	1	1	Median	0.22977	0.26749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37367000	24176000	13192000	25496000	15404000	10092000	11871000	8771400	3100000	0	0	0	0	0	0	23187	3547	21959	144986;144987	196044;196045	196045			2	
HYLPLSSILDTLDVMAYNK	1	Unmodified	2192.1187	0.11874151	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	102.72	102.73	3	4.0378E-09	89491	160511_QHF_FH_JSI12i_3	110.32	96.301			1.0678	1.1092	15.3	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0678	1.1092	15.3	2	2	Median	84115000	36117000	47997000	0	0	0	0	0	0	0	0	0	84115000	36117000	47997000	23188	860	21960	144988;144989	196046;196047	196046			2	
HYNAWYGLGMIYYK	1	Unmodified	1777.8286	0.82864792	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	81.807	73.855	2;3	4.436E-57	41248	160513_QHF_FH_JSI10Kac_6	242.88	192.59			0.85929	0.87109	35.622	9	2	Median	0.88546	0.75583	13.047	2	0	Median	0.65944	0.78167	67.804	3	2	Median	1.0041	0.96693	9.0005	2	0	Median	0.84331	0.8969	4.1287	2	0	Median	1878800000	1033100000	845670000	479500000	279620000	199890000	783660000	435790000	347870000	406140000	215230000	190910000	209510000	102500000	107010000	23189	1347	21961	144990;144991;144992;144993;144994;144995;144996;144997;144998	196048;196049;196050;196051;196052;196053;196054;196055;196056;196057;196058;196059;196060;196061;196062	196061			15	
HYNAWYGLGMIYYK	1	Oxidation (M)	1793.8236	0.82356254	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									8	3	1	2	2	77.337	68.638	2;3	2.1599E-67	38102	160513_QHF_FH_JSI10Kac_6	218.49	194.64			0.86132	0.78156	32.933	8	2	Median	0.83322	0.71559	42.802	3	2	Median	0.47192	0.56702	NaN	1	0	Median	0.71178	0.69151	29.783	2	0	Median	0.98251	1.036	10.194	2	0	Median	371280000	206080000	165190000	146280000	76514000	69765000	41720000	28598000	13122000	88346000	52917000	35429000	94932000	48053000	46879000	23190	1347	21961	144999;145000;145001;145002;145003;145004;145005;145006	196063;196064;196065;196066;196067;196068;196069	196069		990	6	
HYPLYSLNVASMWLK	1	Unmodified	1820.9284	0.92836197	4955	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	88.889	81.111	2;3	1.223E-07	46536	160513_QHF_FH_JSI10Kac_6	113.35	96.206			1.1603	1.2398	48.153	5	3	Median	1.1603	1.0089	NaN	1	1	Median	0.93263	1.0893	18.306	2	0	Median	2.0552	1.9374	NaN	1	1	Median	2.7896	2.9738	NaN	1	1	Median	459000000	155350000	303650000	66992000	28434000	38558000	157110000	77929000	79184000	136020000	29134000	106890000	98874000	19849000	79025000	23191	4955	21962	145007;145008;145009;145010;145011	196070;196071;196072;196073;196074	196074			5	
HYPVFENPK	1	Unmodified	1129.5556	0.55564418	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		9								1	4	4		30.847	30.132	2;3	2.1097E-05	25496	160511_QHF_FH_JSI11i_2	101.72	70.432			0.80251	0.79305	67.928	5	2	Median	NaN	NaN	NaN	0	0	Median	0.42134	1.7548	85.21	3	1	Plateau	1.1479	1.1461	52.081	2	1	Median	NaN	NaN	NaN	0	0	Median	663040000	225260000	437780000	0	0	0	239390000	97590000	141800000	423650000	127670000	295980000	0	0	0	23192	1857	21963	145012;145013;145014;145015;145016;145017;145018;145019;145020	196075;196076;196077;196078;196079;196080;196081;196082;196083;196084	196080			10	
HYQFASGAFLHIK	1	Unmodified	1517.7779	0.77793298	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			6						10	5	5	4	2	66.679	59.976	2;3;4	2.1982E-20	32300	160513_QHF_FH_JSI11Kac_6	146.79	137.25			0.85497	0.93171	89.968	13	6	Median	1.2585	1.022	31.859	3	0	Plateau	0.65501	0.76728	56.224	4	2	Median	0.93313	0.90512	126.65	4	3	Median	2.2206	2.3573	124.31	2	1	Median	2066500000	1208900000	857580000	164390000	75931000	88454000	1099100000	693200000	405940000	359180000	202230000	156950000	443780000	237550000	206230000	23193	3766	21964	145021;145022;145023;145024;145025;145026;145027;145028;145029;145030;145031;145032;145033;145034;145035;145036	196085;196086;196087;196088;196089;196090;196091;196092;196093;196094;196095;196096;196097;196098;196099;196100;196101;196102;196103;196104;196105;196106	196089			21	
HYQGTVDK	1	Unmodified	946.45084	0.45084476	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	5.8301	5.3929	2	0.00026704	3252	160511_QHF_FH_JSI11i_2	114.89	94.374			1.3882	1.4032	111.28	5	3	Median	0.4056	0.34232	NaN	1	1	Median	1.6946	2.0541	NaN	1	0	Median	1.3882	1.4032	NaN	1	0	Median	1.2776	1.4523	173.21	2	2	Median	823460000	326970000	496500000	156340000	34863000	121480000	141770000	48194000	93578000	251240000	127940000	123300000	274120000	115970000	158150000	23194	1962	21965	145037;145038;145039;145040;145041;145042	196107;196108;196109;196110;196111;196112;196113	196111			7	
HYQTGQPLPK	1	Unmodified	1167.6037	0.60365701	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			15.476	14.806	2	0.011582	12381	160511_QHF_FH_JSI10i_2	46.462	32.883			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23195	4314	21966	145043	196114	196114			1	
HYRGPAGDATVASEK	1	Unmodified	1557.7536	0.75356872	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				17.287	16.174	3	0.021082	12814	160511_QHF_FH_JSI9i_3	37.177	30.295			0.94226	0.74722	NaN	1	0	Median	0.94226	0.74722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30620000	16965000	13655000	30620000	16965000	13655000	0	0	0	0	0	0	0	0	0	23196	2705	21967	145044	196115	196115			1	
HYSPEDEPSPEAQPIAAYK	1	Unmodified	2127.9749	0.97491405	3188	Q6ZSR9		Uncharacterized protein FLJ45252	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.773	44.28	3	3.9032E-05	38058	160511_QHF_FH_JSI11i_2	86.367	77.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16699000	0	16699000	0	0	0	0	0	0	16699000	0	16699000	0	0	0	23197	3188	21968	145045	196116	196116			1	
HYSVVLPTVSHSGFLYK	1	Unmodified	1933.0098	0.0097834104	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			72.615	71.166	3	0.024667	59654	160511_QHF_FH_JSI10i_3	30.107	20.824			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23198	4191	21969	145046	196117	196117			1	
HYTEAIK	1	Unmodified	860.43922	0.43921744	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	1	3	3	9.2731	9.0059	2	0.010009	6475	160511_QHF_FH_JSI11i_3	81.784	56.785			0.35766	0.36552	205.62	9	9	Median	1.0793	0.91409	320.5	2	2	Median	0.038031	0.043816	NaN	1	1	Median	0.41163	0.39818	196.44	3	3	Median	0.35766	0.36552	201.22	3	3	Median	2632700000	1688800000	943920000	447900000	131160000	316730000	52486000	51203000	1282900	1169400000	888760000	280650000	962920000	617660000	345260000	23199	1386	21970	145047;145048;145049;145050;145051;145052;145053;145054;145055	196118;196119;196120;196121;196122;196123;196124;196125;196126	196118			9	
HYTFASGSPDNIK	1	Unmodified	1435.6732	0.67319314	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	3	1	32.846	32.047	2;3	3.5892E-06	27066	160511_QHF_FH_JSI11i_2	87.568	63.346			0.82545	0.83052	118.07	5	5	Median	NaN	NaN	NaN	0	0	Median	0.89706	1.09	142.54	2	2	Median	0.49994	0.51511	67.554	2	2	Median	4.05	4.4309	NaN	1	1	Median	234210000	144880000	89327000	0	0	0	57418000	36902000	20516000	155220000	100530000	54689000	21573000	7450900	14122000	23200	350	21971	145056;145057;145058;145059;145060;145061	196127;196128;196129;196130;196131;196132	196130			6	
HYTFYVWK	1	Unmodified	1142.5549	0.5549159	2877	Q5I7T1;Q5BKT4	ALG10B;ALG10	Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase;Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	2	2		66.432	57.563	2;3	0.00080719	31521	160513_QHF_FH_JSI10Kac_6	109.86	95.656			0.60663	0.72734	37.186	6	2	Median	0.70516	0.60784	36.005	2	0	Median	0.60663	0.72734	5.3132	2	1	Median	0.9093	0.89121	64.212	2	1	Median	NaN	NaN	NaN	0	0	Median	351860000	168210000	183640000	116200000	57510000	58691000	190240000	83954000	106290000	45413000	26749000	18664000	0	0	0	23201	2877	21972	145062;145063;145064;145065;145066;145067	196133;196134;196135;196136	196136			3	
HYVYGPLPQSFDK	1	Unmodified	1549.7565	0.75652884	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.49		9	3						6	5	3	6	4	58.454	54.493	2;3	2.1329E-10	48036	160511_QHF_FH_JSI9i_2	177.57	159.76			0.88465	1.0507	114.98	14	8	Median	1.2203	1.0475	71.374	3	2	Median	0.88465	1.105	6.6916	2	0	Median	0.59465	0.60054	158.1	5	3	Median	1.4574	1.5999	123.54	4	3	Median	2536100000	1148800000	1387300000	178790000	93472000	85315000	497000000	274030000	222970000	1595500000	697370000	898150000	264780000	83891000	180890000	23202	1026	21973	145068;145069;145070;145071;145072;145073;145074;145075;145076;145077;145078;145079;145080;145081;145082;145083;145084;145085	196137;196138;196139;196140;196141;196142;196143;196144;196145;196146;196147;196148;196149;196150;196151;196152;196153;196154;196155;196156;196157;196158;196159	196145			23	
HYVYIIR	0	Unmodified	962.53379	0.53378653	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	42.749	33.661	2	2.2478E-24	18170	160513_QHF_FH_JSI9Kac_6	181.07	136.96			0.98717	0.96405	70.806	5	2	Median	1.08	0.93328	NaN	1	0	Median	0.93004	1.0893	140.84	2	2	Median	0.98717	0.96538	NaN	1	0	Median	0.92035	0.96405	NaN	1	0	Median	272070000	133870000	138200000	48459000	22741000	25718000	150760000	73662000	77102000	40464000	20638000	19825000	32382000	16832000	15550000	23203	11	21974	145086;145087;145088;145089;145090	196160;196161;196162;196163;196164;196165;196166	196162			7	
HYWEVTVK	1	Unmodified	1060.5342	0.53418046	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	45.074	35.762	2	0.004669	18689	160513_QHF_FH_JSI12Kac_6	85.064	64.544			0.55283	0.54931	63.269	5	5	Median	1.7507	1.4689	NaN	1	1	Median	0.396	0.47195	NaN	1	1	Median	0.55283	0.54931	NaN	1	1	Median	0.80615	0.8639	89.686	2	2	Median	26547000	13897000	12650000	5101200	1640400	3460800	8382800	5689900	2693000	3338100	2351400	986700	9725400	4215500	5509900	23204	3795	21975	145091;145092;145093;145094;145095	196167;196168;196169;196170;196171	196170			5	
HYYSITINYR	0	Unmodified	1328.6513	0.65133548	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	4	2	2	3	55.965	46.609	2;3	7.6687E-44	25222	160513_QHF_FH_JSI11Kac_6	203.35	193.12			0.91592	0.95439	31.85	11	1	Median	0.64132	0.69886	40.731	4	1	Linear	0.53877	0.64258	2.866	2	0	Median	1.0621	1.0085	2.2118	2	0	Median	1.1845	1.2554	16.17	3	0	Median	2949400000	1320500000	1628900000	797840000	305090000	492750000	1117100000	577460000	539590000	439480000	213660000	225820000	595030000	224330000	370700000	23205	144	21976	145096;145097;145098;145099;145100;145101;145102;145103;145104;145105;145106	196172;196173;196174;196175;196176;196177;196178;196179;196180;196181;196182;196183;196184;196185;196186;196187;196188;196189;196190;196191;196192;196193;196194;196195;196196;196197	196173			26	
HYYSITINYRK	1	Unmodified	1456.7463	0.7462985	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	1	3	48.896	39.539	3	2.4669E-08	20630	160513_QHF_FH_JSI12Kac_6	115.91	101.23			1.3309	1.4103	64.681	6	3	Median	0.59855	0.50989	22.816	2	1	Median	1.2373	1.4497	NaN	1	0	Median	1.4316	1.372	NaN	1	0	Median	1.8797	2.0177	3.5953	2	2	Median	243120000	119380000	123730000	62074000	33515000	28559000	118160000	62936000	55227000	10689000	4738400	5950700	52189000	18192000	33997000	23206	144	21977	145107;145108;145109;145110;145111;145112;145113	196198;196199;196200;196201;196202;196203;196204;196205;196206;196207	196204			10	
IAAAGLDVTSPEPLPTNHPLLTLK	1	Unmodified	2467.3686	0.36862527	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	89.27	88.682	3	1.066E-17	79146	160511_QHF_FH_JSI11i_3	126.97	115.99			1.0185	1.0142	7.4859	8	0	Median	1.2243	1.036	10.792	2	0	Median	0.87307	1.0146	2.2663	2	0	Median	1.0185	1.0142	1.3098	2	0	Median	1.0053	1.0726	15.082	2	0	Median	1869200000	926700000	942480000	192770000	85036000	107740000	262430000	138750000	123680000	638460000	307720000	330740000	775520000	395200000	380320000	23207	5249	21978	145114;145115;145116;145117;145118;145119;145120;145121	196208;196209;196210;196211;196212;196213;196214;196215;196216;196217;196218;196219;196220;196221;196222;196223;196224;196225;196226;196227;196228;196229	196209			22	
IAAAILNTPDLR	0	Unmodified	1266.7296	0.7295858	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	66.084	65.501	2	1.8142E-05	57997	160511_QHF_FH_JSI10i_2	112.36	78.491			0.88362	0.91439	22.619	8	2	Median	1.1248	0.97616	NaN	1	0	Median	0.55528	0.65687	16.86	2	0	Median	1.0196	1.0317	20.304	3	2	Plateau	0.91219	0.98484	19.742	2	0	Median	749340000	398160000	351180000	106010000	49344000	56665000	199730000	124040000	75682000	286610000	139060000	147550000	156990000	85714000	71279000	23208	773	21979	145122;145123;145124;145125;145126;145127;145128;145129	196230;196231;196232;196233;196234;196235;196236;196237;196238;196239	196237			10	
IAAAILNTPDLRK	1	Unmodified	1394.8245	0.82454882	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	6.09		7	8					3	4	6	6	6	4	59.073	55.216	2;3	2.6479E-16	45279	160511_QHF_FH_JSI9i_3	165.58	131.8			0.95486	0.98481	27.348	21	3	Median	1.1658	0.97534	16.445	5	0	Median	0.83648	1.0019	9.0218	6	0	Median	0.94347	0.90485	41.459	6	3	Median	0.83908	0.88694	34.034	4	0	Median	6563600000	3407800000	3155800000	1696800000	781900000	914860000	1879600000	1080300000	799310000	2387900000	1224500000	1163500000	599280000	321110000	278170000	23209	773	21980	145130;145131;145132;145133;145134;145135;145136;145137;145138;145139;145140;145141;145142;145143;145144;145145;145146;145147;145148;145149;145150;145151	196240;196241;196242;196243;196244;196245;196246;196247;196248;196249;196250;196251;196252;196253;196254;196255;196256;196257;196258;196259;196260;196261;196262;196263;196264;196265;196266;196267;196268;196269;196270;196271;196272;196273;196274;196275;196276;196277;196278	196257			39	
IAAANGIGR	0	Unmodified	841.477	0.47699993	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.77	4	3	2					3		2	4	4	2	18.252	15.552	2	0.0016076	13700	160511_QHF_FH_JSI10i_2	68.312	37.023			1.0266	1.1046	9.2702	12	1	Median	1.3739	1.142	0.97386	2	0	Median	0.97327	1.1457	11.69	4	1	Median	1.0864	0.93337	9.351	4	0	Linear	1.0084	1.1095	3.5616	2	0	Median	2553700000	1271000000	1282700000	473960000	197010000	276950000	917680000	464130000	453550000	1049400000	553210000	496200000	112680000	56626000	56053000	23210	1460	21981	145152;145153;145154;145155;145156;145157;145158;145159;145160;145161;145162;145163	196279;196280;196281;196282;196283;196284;196285;196286	196286			8	
IAAEIAQAEEQAR	0	Unmodified	1398.7103	0.71030693	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	38.63	37.78	2	3.3493E-06	33794	160511_QHF_FH_JSI10i_1	122.69	111.94			0.77164	0.77432	75.4	9	8	Median	0.76358	0.63872	1.8436	2	1	Median	0.70367	0.83949	18.333	2	2	Median	0.80005	0.82306	8.6331	2	2	Median	6.4281	6.6334	113.86	3	3	Plateau	563340000	282800000	280540000	111300000	60112000	51186000	175500000	99035000	76465000	169280000	92861000	76423000	107260000	30796000	76464000	23211	3936	21982	145164;145165;145166;145167;145168;145169;145170;145171;145172	196287;196288;196289;196290;196291;196292;196293;196294;196295;196296	196292			10	
IAAENELNQSYK	1	Unmodified	1378.6729	0.67285879	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.534	32.929	2	9.5694E-05	29686	160511_QHF_FH_JSI12i_1	109.66	93.032			0.75517	0.82472	22.188	4	1	Median	1.2569	1.032	NaN	1	1	Median	0.66993	0.77983	NaN	1	0	Median	0.62531	0.60819	NaN	1	0	Median	0.85127	0.8722	NaN	1	0	Median	453280000	226810000	226470000	107780000	42693000	65088000	138690000	75122000	63571000	125630000	64915000	60716000	81176000	44079000	37097000	23212	287	21983	145173;145174;145175;145176	196297;196298;196299;196300	196298			4	
IAAEYYDNLPHYNSWIK	1	Unmodified	2096.0003	0.0003409361	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	3	3	76.349	75.66	3	6.5307E-11	66441	160511_QHF_FH_JSI11i_2	149.57	134.69			0.89453	0.95597	10.686	8	5	Median	1.0909	0.92946	NaN	1	0	Median	0.78181	0.96224	NaN	1	0	Median	0.88167	0.88878	9.5604	3	3	Median	0.90758	1.0111	12.077	3	2	Median	1338500000	676850000	661610000	80984000	38938000	42046000	134120000	82779000	51338000	724130000	357770000	366360000	399240000	197370000	201870000	23213	251	21984	145177;145178;145179;145180;145181;145182;145183;145184	196301;196302;196303;196304;196305;196306;196307;196308;196309;196310	196306			10	
IAAGEVIQRPANAIK	1	Unmodified	1549.894	0.89402537	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		44.231	43.182	3	0.016716	36046	160511_QHF_FH_JSI10i_3	27.643	16.03			0.79505	0.79141	5.0242	3	0	Median	0.97513	0.79141	NaN	1	0	Median	0.70805	0.81587	NaN	1	0	Median	0.79505	0.73959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	315670000	172520000	143150000	123010000	58615000	64392000	113880000	67853000	46029000	78779000	46054000	32724000	0	0	0	23214	1499	21985	145185;145186;145187	196311;196312	196311			2	
IAAGIFKHLK	2	Acetyl (K)	1138.6863	0.68626443	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.018	55.352	3	0.00064005	29956	160513_QHF_FH_JSI11Kac_6	74.267	57.036			0.24045	0.23921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24045	0.23921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34486000	25870000	8615900	0	0	0	0	0	0	34486000	25870000	8615900	0	0	0	23215	2992	21986	145188	196313	196313	2732		1	
IAAGSSDFLVK	1	Unmodified	1106.5972	0.59717465	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		50.226	49.544	2	0.0081182	44605	160511_QHF_FH_JSI10i_1	59.931	38.984			1.046	1.0158	34.645	3	3	Plateau	0.61894	0.50877	NaN	1	1	Median	0.62167	0.74697	NaN	1	1	Median	1.0468	1.0158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	264310000	170710000	93595000	109940000	81793000	28151000	78757000	50169000	28587000	75608000	38751000	36857000	0	0	0	23216	560	21987	145189;145190;145191	196314;196315;196316	196315			3	
IAAHLADFTPR	0	Unmodified	1210.6459	0.64585618	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	46.181	45.771	2;3	6.0959E-06	39099	160511_QHF_FH_JSI12i_3	90.653	86.317			1.1517	1.1621	18.138	5	1	Median	NaN	NaN	NaN	0	0	Median	0.751	0.88432	NaN	1	0	Median	1.3688	1.2639	7.2324	2	0	Median	1.0309	1.025	17.753	2	1	Median	471040000	230480000	240570000	0	0	0	17058000	9250300	7807800	178960000	83929000	95036000	275020000	137300000	137720000	23217	486	21988	145192;145193;145194;145195;145196	196317;196318;196319;196320;196321;196322;196323	196322			7	
IAAHPNVQK	1	Unmodified	976.54541	0.54541385	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	9.2846	9.121	3	0.0025715	6868	160511_QHF_FH_JSI11i_3	49.423	33.22			0.74489	0.72926	7.731	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.66062	0.72926	NaN	1	0	Median	0.82533	0.79217	NaN	1	0	Median	0.67229	0.67877	NaN	1	1	Median	179260000	103780000	75474000	0	0	0	29391000	17858000	11534000	54504000	33711000	20793000	95362000	52214000	43148000	23218	1599	21989	145197;145198;145199	196324;196325;196326	196325			3	
IAAIDSLNQYTR	0	Unmodified	1363.7096	0.70957864	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	57.815	56.99	2	0.00028807	49411	160511_QHF_FH_JSI11i_2	74.944	55.182			0.81866	0.88696	9.6454	5	0	Median	1.0446	0.88696	NaN	1	0	Median	0.69008	0.82736	9.2033	2	0	Median	0.99058	1.0155	NaN	1	0	Median	0.81866	0.91395	NaN	1	0	Median	643400000	336290000	307110000	117320000	57503000	59816000	221420000	125290000	96135000	184240000	86869000	97370000	120420000	66631000	53788000	23219	3176	21990	145200;145201;145202;145203;145204	196327;196328;196329;196330;196331;196332;196333;196334	196332			8	
IAAKFITHAPPGEFNEVFNDVR	1	Acetyl (K)	2513.2703	0.27030821	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		83.774	75.932	3	2.7091E-29	41583	160513_QHF_FH_JSI11Kac_6	158.94	147.64			0.91161	1.0735	15.947	3	0	Plateau	1.4546	1.2559	NaN	1	0	Median	0.91133	1.0735	NaN	1	0	Median	0.93796	0.91293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	245410000	121800000	123610000	45446000	17128000	28318000	102430000	50179000	52248000	97538000	54489000	43049000	0	0	0	23220	1788	21991	145205;145206;145207	196335;196336	196335	1800		2	
IAALQAFADQLIAAGHYAK	1	Unmodified	1971.0578	0.057796236	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	3	1	1	1	99.96	98.418	3	5.9561E-43	88080	160511_QHF_FH_JSI12i_3	205.31	189.89			0.99237	0.88959	16.78	6	1	Median	1.0588	0.8531	21.286	3	1	Median	1.0103	1.1554	NaN	1	0	Median	0.9748	0.92014	NaN	1	0	Median	0.8509	0.86007	NaN	1	0	Median	2984000000	1544200000	1439700000	379010000	191720000	187290000	613530000	305240000	308290000	674260000	351130000	323120000	1317200000	696130000	621040000	23221	2470	21992	145208;145209;145210;145211;145212;145213	196337;196338;196339;196340;196341;196342;196343;196344;196345;196346	196345			10	
IAAQDLLLAVATDFQNESAAALAAAATR	0	Unmodified	2785.461	0.4610221	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	4.12		6	3						1	2	3	3	2	103.53	102.55	3;4	9.2631E-50	91431	160511_QHF_FH_JSI11i_2	190.28	184.12			0.99801	1.2018	18.303	9	1	Median	1.3882	1.1789	4.7467	2	0	Median	0.99801	1.2447	9.2826	3	1	Plateau	1.1318	1.082	16.387	2	0	Median	0.965	1.0506	44.955	2	0	Median	960250000	445870000	514370000	302470000	114600000	187860000	140110000	72787000	67322000	429650000	217210000	212450000	88014000	41273000	46741000	23222	4193	21993	145214;145215;145216;145217;145218;145219;145220;145221;145222;145223	196347;196348;196349;196350;196351;196352;196353;196354;196355	196351			8	
IAAQGFTVAAILLGLAVTAMK	1	Unmodified	2058.1911	0.19111859	4491	Q9BW72	HIGD2A	HIG1 domain family member 2A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	2.25				3	1				8	3	4	3	2	104.98	96.047	2;3	1.0518E-46	55229	160513_QHF_FH_JSI9Kac_6	214.22	183.89			0.86708	0.87999	27.395	10	3	Median	0.82683	0.70048	14.577	2	0	Median	0.69354	0.7732	12.898	3	2	Median	1.0983	1.0452	36.594	3	1	Median	0.93076	0.97954	9.9052	2	0	Median	744300000	386350000	357950000	199840000	109670000	90168000	135010000	72206000	62807000	250810000	119980000	130830000	158640000	84491000	74146000	23223	4491	21994	145224;145225;145226;145227;145228;145229;145230;145231;145232;145233;145234;145235	196356;196357;196358;196359;196360;196361;196362;196363;196364;196365;196366;196367;196368;196369;196370;196371	196366			16	
IAAQGFTVAAILLGLAVTAMK	1	Oxidation (M)	2074.186	0.18603322	4491	Q9BW72	HIGD2A	HIG1 domain family member 2A, mitochondrial	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		102.17	92.748	3	0.027905	53236	160513_QHF_FH_JSI11Kac_6	38.746	30.145			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23224	4491	21994	145236	196372	196372			1	
IAAQGFTVAAILLGLAVTAMKSRP	1	Unmodified	2398.377	0.37702188	4491	Q9BW72	HIGD2A	HIG1 domain family member 2A, mitochondrial	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			102.54	96.816	3	7.6274E-08	57245	160513_QHF_FH_JSI10Kac_6	122.5	110.88			0.85903	1.0281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85903	1.0281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125040000	73788000	51254000	0	0	0	125040000	73788000	51254000	0	0	0	0	0	0	23225	4491	21995	145237	196373	196373			1	
IAAQTLLGTAK	1	Unmodified	1085.6445	0.64445919	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	49.708	48.748	2	0.001904	41693	160511_QHF_FH_JSI12i_2	60.167	42.609			0.90167	0.90405	11.826	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90167	1.129	NaN	1	0	Median	0.88986	0.90405	NaN	1	0	Median	0.97387	1.0837	NaN	1	0	Median	382120000	192640000	189480000	0	0	0	95344000	51251000	44093000	180730000	92354000	88374000	106050000	49036000	57013000	23226	2859	21996	145238;145239;145240	196374;196375;196376;196377;196378	196374			5	
IAASSSFR	0	Unmodified	837.43447	0.43446642	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	17.897	17.321	2	0.04611	13825	160511_QHF_FH_JSI12i_3	38.133	11.171			0.9116	0.91776	13.785	5	0	Median	1.1782	1.0081	NaN	1	0	Median	0.69468	0.84117	NaN	1	0	Median	0.9116	0.91959	NaN	1	0	Median	0.78043	0.80155	19.146	2	0	Median	699250000	381920000	317330000	85652000	39251000	46402000	120990000	74911000	46075000	112480000	63780000	48699000	380130000	203980000	176150000	23227	4331	21997	145241;145242;145243;145244;145245	196379	196379			1	
IAATPAGSR	0	Unmodified	842.46102	0.46101552	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.182	17.697	2	0.047359	15251	160511_QHF_FH_JSI12i_1	36.395	3.9247			1.0438	1.1143	10.26	4	0	Median	1.4323	1.1951	NaN	1	0	Median	0.96877	1.146	NaN	1	0	Median	1.1246	1.0834	NaN	1	0	Median	0.88561	0.94439	NaN	1	0	Median	1589300000	719710000	869540000	331680000	129520000	202160000	405530000	207410000	198120000	505040000	188150000	316890000	347000000	194640000	152360000	23228	4584	21998	145246;145247;145248;145249	196380	196380			1	
IAAYAYSALSQIR	0	Unmodified	1425.7616	0.76161421	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	4	3	4	3	70.675	68.246	2;3	5.1589E-12	35607	160513_QHF_FH_JSI9Kac_6	121.61	103			0.82693	0.91831	40.041	13	4	Median	1.2098	1.0539	18.091	3	0	Median	0.82351	0.97904	4.6615	3	0	Plateau	0.91962	0.89903	31.359	4	2	Median	0.89752	0.92687	68.783	3	2	Plateau	713720000	366070000	347660000	153670000	64135000	89535000	175500000	95192000	80311000	229630000	114780000	114850000	154920000	91960000	62957000	23229	3051	21999	145250;145251;145252;145253;145254;145255;145256;145257;145258;145259;145260;145261;145262;145263	196381;196382;196383;196384;196385;196386;196387;196388;196389;196390;196391;196392;196393;196394;196395;196396;196397;196398;196399;196400	196395			20	
IAAYGHEVGK	1	Unmodified	1043.54	0.53999412	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.27	1	10	5					4	4	5	7	6	6	21.237	17.948	2;3	3.3736E-05	15343	160511_QHF_FH_JSI9i_2	96.034	83.206			0.90985	0.89604	43.799	24	9	Median	1.1915	1.0068	22.999	5	0	Median	1.1139	1.3129	60.779	7	5	Median	0.95191	0.94964	57.85	6	2	Median	0.73844	0.81665	18.122	6	2	Median	5905600000	3600900000	2304700000	600440000	238600000	361830000	1357900000	776210000	581690000	2614800000	1764100000	850730000	1332400000	822000000	510410000	23230	2757	22000	145264;145265;145266;145267;145268;145269;145270;145271;145272;145273;145274;145275;145276;145277;145278;145279;145280;145281;145282;145283;145284;145285;145286;145287	196401;196402;196403;196404;196405;196406;196407;196408;196409;196410;196411;196412;196413;196414;196415;196416;196417;196418;196419;196420;196421;196422;196423;196424;196425;196426	196413			26	
IAAYKSILQER	1	Acetyl (K)	1332.7402	0.74015049	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.471								4	2	1	2	2	1	71.195	61.244	2	0.00010365	33015	160513_QHF_FH_JSI11Kac_6	96.171	67.214			0.84676	0.97624	87.856	6	1	Median	1.2675	1.0599	NaN	1	0	Median	0.94516	1.1241	22.456	2	0	Median	0.25616	0.24887	97.332	2	1	Median	0.88925	0.99368	NaN	1	0	Median	152690000	94025000	58661000	4224200	1837700	2386500	81968000	44503000	37466000	59532000	43800000	15733000	6961300	3885300	3076100	23231	1024	22001	145288;145289;145290;145291;145292;145293	196427;196428;196429;196430;196431	196427	844		5	
IAAYLFK	1	Unmodified	824.47963	0.47962569	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.6		3	3					2	4	4	3	3	2	58.819	53.603	2	0.010513	45791	160511_QHF_FH_JSI12i_3	80.377	43.79			1.124	1.0629	20.552	12	1	Median	1.3032	1.1015	23.776	4	0	Median	1.1288	1.1563	15.982	3	0	Plateau	1.0484	1.0222	3.6302	3	0	Plateau	0.84343	0.87566	31.707	2	1	Median	5599200000	2552000000	3047200000	1222200000	517570000	704660000	978910000	477520000	501390000	2613600000	1217700000	1395800000	784520000	339210000	445320000	23232	2155	22002	145294;145295;145296;145297;145298;145299;145300;145301;145302;145303;145304;145305	196432;196433;196434;196435;196436;196437;196438;196439;196440;196441;196442	196440			11	
IAAYLQSDQFCK	1	Unmodified	1442.6864	0.68640036	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.12	3	4					3	1		1	3	4	3	55.655	51.224	2	1.0513E-15	44018	160511_QHF_FH_JSI12i_2	155.42	144.26			1.0342	1.0745	13.344	11	0	Median	1.2035	1.011	NaN	1	0	Median	0.90047	1.0736	6.2773	3	0	Plateau	0.99026	0.97347	6.915	4	0	Median	1.1521	1.2473	9.3871	3	0	Plateau	1049500000	504290000	545170000	75065000	29874000	45191000	312860000	180800000	132060000	344700000	169270000	175430000	316830000	124350000	192480000	23233	1188	22003	145306;145307;145308;145309;145310;145311;145312;145313;145314;145315;145316	196443;196444;196445;196446;196447;196448;196449;196450;196451;196452;196453;196454;196455;196456	196446			14	
IACLDFSLQK	1	Unmodified	1193.6114	0.6114445	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	67.416	66.772	2	0.00045736	57277	160511_QHF_FH_JSI12i_2	73.985	60.632			0.92294	0.92187	42.143	5	1	Median	NaN	NaN	NaN	0	0	Median	0.79641	0.90972	NaN	1	1	Median	0.73292	0.71259	36.417	2	0	Median	1.2492	1.3486	40.794	2	0	Median	523070000	268080000	254990000	0	0	0	118660000	66870000	51793000	183040000	97755000	85288000	221360000	103460000	117910000	23234	1132	22004	145317;145318;145319;145320;145321	196457;196458;196459;196460	196457			4	
IACYSNMGFHDK	1	Unmodified	1441.6119	0.61185521	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	33.071	33.024	3	0.018422	28739	160511_QHF_FH_JSI11i_3	37.793	31.357			1.5091	1.5033	20.811	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4004	1.2976	NaN	1	1	Median	1.6263	1.7416	NaN	1	1	Median	34038000	11838000	22200000	0	0	0	0	0	0	13620000	5554500	8065300	20418000	6283400	14135000	23235	3425	22005	145322;145323	196461;196462;196463	196461			3	
IADEDRGNWR	0	Unmodified	1230.5741	0.5741478	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			16.492	15.482	3	0.019198	12465	160511_QHF_FH_JSI10i_3	33.875	25.476			0.81899	0.94544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81899	0.94544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52722000	30016000	22706000	0	0	0	52722000	30016000	22706000	0	0	0	0	0	0	23236	2502	22006	145324	196464	196464			1	
IADFGWSVHAPSLR	0	Unmodified	1554.7943	0.79431133	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.38	72.233	3	0.00034359	64418	160511_QHF_FH_JSI11i_3	63.037	55.313			0.78485	0.76287	12.327	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.917	0.83236	NaN	1	0	Median	0.67174	0.69919	NaN	1	1	Median	89225000	49873000	39352000	0	0	0	0	0	0	48670000	25023000	23647000	40555000	24850000	15705000	23237	4088	22007	145325;145326	196465;196466	196465			2	
IADFGWSVHAPSSR	0	Unmodified	1528.7423	0.74227576	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.82	56.82	3	0.025673	50330	160511_QHF_FH_JSI11i_3	32.152	22.865			0.97786	0.89126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97786	0.89126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71305000	43399000	27906000	0	0	0	0	0	0	71305000	43399000	27906000	0	0	0	23238	226	22008	145327	196467	196467			1	
IADFQDVLK	1	Unmodified	1047.5601	0.56006086	5031	Q9NVG8	TBC1D13	TBC1 domain family member 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	64.019	63.146	2	0.036438	57428	160511_QHF_FH_JSI11i_1	38.776	16.284			1.6733	1.7023	67.34	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0738	1.0574	NaN	1	0	Median	2.6075	2.7406	NaN	1	0	Median	40084000	21174000	18910000	0	0	0	0	0	0	26529000	16628000	9901100	13555000	4546800	9008500	23239	5031	22009	145328;145329	196468	196468			1	
IADGYEQAAR	0	Unmodified	1092.52	0.51998696	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.52	3	8				2	3			3	3	6	4	17.442	14.596	2;3	0.00168	10272	160513_QHF_FH_JSI11Kac_4	78.149	56.621			0.9931	1.0072	18.128	16	1	Median	1.176	0.96372	37.996	3	1	Median	0.64298	0.79794	18.545	3	0	Plateau	0.99419	1.0164	4.6845	6	0	Median	0.90832	1.0178	9.9168	4	0	Median	6239100000	2975600000	3263500000	1765600000	745660000	1019900000	518460000	319640000	198820000	2131300000	984780000	1146600000	1823700000	925490000	898240000	23240	1630	22010	145330;145331;145332;145333;145334;145335;145336;145337;145338;145339;145340;145341;145342;145343;145344;145345	196469;196470;196471;196472;196473;196474;196475;196476;196477;196478;196479;196480;196481	196474			13	
IADLCHTFIK	1	Unmodified	1216.6274	0.62742892	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.25	0.433		3	1								1	2	1	51.431	50.716	3	2.6324E-05	43738	160511_QHF_FH_JSI11i_2	80.706	66.144			1.1046	1.1394	18.913	4	2	Median	NaN	NaN	NaN	0	0	Median	1.082	1.3245	NaN	1	1	Median	0.99614	0.95751	15.742	2	1	Median	1.1276	1.213	NaN	1	0	Median	129920000	63891000	66028000	0	0	0	32973000	15191000	17783000	64941000	32112000	32829000	32005000	16588000	15417000	23241	2518	22011	145346;145347;145348;145349	196482;196483;196484;196485	196483			4	
IADLGLASFK	1	Unmodified	1033.5808	0.5807963	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.89	66.992	2	0.0091271	57677	160511_QHF_FH_JSI12i_2	49.35	25.922			0.97838	1.0316	3.7742	4	0	Median	1.1713	1.0592	NaN	1	0	Median	0.7965	0.97255	NaN	1	0	Median	1.049	1.0457	NaN	1	0	Median	0.91252	1.0177	NaN	1	0	Median	245120000	116600000	128520000	47149000	21809000	25340000	54618000	27620000	26998000	88037000	36430000	51607000	55316000	30739000	24577000	23242	2437	22012	145350;145351;145352;145353	196486;196487;196488	196486			3	
IADMGHLK	1	Oxidation (M)	899.45349	0.4534873	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	3.4	3.88		8	1					1		2		5	3	16.568	15.108	2;3	0.0044092	15715	160511_QHF_FH_JSI12i_2	50.04	36.687			0.95387	1.0078	137.12	10	3	Median	1.3514	1.1527	62.76	2	1	Median	NaN	NaN	NaN	0	0	Median	1.8851	1.7503	190.12	5	2	Median	0.66703	0.7445	16.453	3	0	Median	1214100000	508460000	705620000	286910000	104350000	182560000	0	0	0	474460000	153540000	320910000	452710000	250570000	202140000	23243	1010	22013	145354;145355;145356;145357;145358;145359;145360;145361;145362;145363	196489;196490;196491;196492;196493;196494;196495;196496	196491		601	7	
IADMGHLK	1	Unmodified	883.45857	0.45857268	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.66	5.21	2	13	9						5	4	5	11	9	20.702	18.78	2;3	0.001329	15979	160511_QHF_FH_JSI9i_2	59.245	40.514			1.2608	1.2902	143.9	25	10	Median	1.0664	0.90835	37.769	3	1	Median	0.7734	0.89985	256.11	4	3	Median	1.4667	1.4389	113.34	10	4	Median	2.7619	2.9689	144.98	8	2	Median	9142900000	4016800000	5126000000	1117800000	527740000	590040000	1643000000	846340000	796690000	4169300000	1891400000	2277900000	2212800000	751410000	1461400000	23244	1010	22013	145364;145365;145366;145367;145368;145369;145370;145371;145372;145373;145374;145375;145376;145377;145378;145379;145380;145381;145382;145383;145384;145385;145386;145387;145388;145389;145390;145391;145392	196497;196498;196499;196500;196501;196502;196503;196504;196505;196506;196507;196508;196509;196510;196511;196512;196513;196514;196515;196516;196517;196518;196519;196520;196521	196512			24	
IADMGHLKYYLAPK	2	Acetyl (K)	1660.8647	0.86469908	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	78.409	70.135	2;3	5.243E-45	38021	160513_QHF_FH_JSI11Kac_6	190.3	174.76			0.22503	0.22752	6.6327	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24842	0.23845	NaN	1	0	Median	0.20384	0.2171	NaN	1	0	Median	204190000	179400000	24789000	0	0	0	40735000	40735000	0	108680000	89888000	18791000	54776000	48778000	5998600	23245	1010	22014	145393;145394;145395;145396	196522;196523;196524;196525;196526	196523	812		5	
IADMGHLKYYLAPK	2	Acetyl (K);Oxidation (M)	1676.8596	0.8596137	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		66.452	56.812	3	0.0026997	30724	160513_QHF_FH_JSI11Kac_6	60.196	48.926			0.091938	0.090689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.091938	0.090689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24529000	23268000	1260500	0	0	0	0	0	0	24529000	23268000	1260500	0	0	0	23246	1010	22014	145397	196527	196527	812	601	1	
IADNHTPK	1	Unmodified	894.45593	0.45593014	2053	P63165	SUMO1	Small ubiquitin-related modifier 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.91		8	3					5		5	3	4	4	5.5014	2.3282	2;3	0.00050124	2887	160511_QHF_FH_JSI11i_2	74.92	56.189			0.89396	0.90131	22.439	16	1	Median	0.90938	0.76773	16.204	5	1	Median	0.86698	1.0714	27.765	3	0	Plateau	0.95955	0.95165	11.998	4	0	Median	0.85497	0.9355	31.893	4	0	Median	3582100000	1881100000	1701000000	694170000	353870000	340300000	754450000	422330000	332120000	1046400000	543030000	503340000	1087100000	561860000	525270000	23247	2053	22015	145398;145399;145400;145401;145402;145403;145404;145405;145406;145407;145408;145409;145410;145411;145412;145413	196528;196529;196530;196531;196532;196533;196534;196535;196536;196537;196538;196539;196540;196541;196542;196543;196544;196545;196546	196539			18	
IADPEHDHTGFLTEYVATR	0	Unmodified	2171.0283	0.028346601	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.561	59.427	3	4.7969E-08	52625	160511_QHF_FH_JSI11i_3	99.508	96.317			1.2633	1.2029	3.7304	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3516	1.2351	NaN	1	0	Median	1.1808	1.1716	NaN	1	0	Median	169290000	78940000	90355000	0	0	0	0	0	0	92485000	40164000	52321000	76810000	38776000	38034000	23248	1289	22016	145414;145415	196547;196548;196549	196547			3	
IADQFLGAMYTLPR	0	Unmodified	1594.8177	0.81774888	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	2	10								2	2	4	4	88.974	88.377	2;3	4.462E-05	78507	160511_QHF_FH_JSI10i_2	85.909	79.328			0.726	0.77893	60.386	12	7	Median	0.77972	0.66819	50.742	2	0	Median	0.67773	0.84224	28.151	2	0	Median	0.72812	0.72932	14.303	4	3	Median	0.726	0.80305	102.47	4	4	Median	460450000	273720000	186730000	80540000	43880000	36660000	56686000	37640000	19046000	214280000	123210000	91073000	108940000	68993000	39951000	23249	412	22017	145416;145417;145418;145419;145420;145421;145422;145423;145424;145425;145426;145427	196550;196551;196552;196553;196554;196555;196556;196557;196558;196559;196560;196561;196562;196563;196564;196565;196566	196566			17	
IADQLEELNK	1	Unmodified	1171.6085	0.60846762	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.705	41.061	2	1.3477E-05	37133	160511_QHF_FH_JSI11i_1	101.9	76.759			0.50729	0.51312	30.865	4	1	Median	0.52468	0.42459	NaN	1	0	Median	0.47254	0.55735	NaN	1	0	Median	0.49048	0.4724	NaN	1	0	Median	0.82554	0.85633	NaN	1	1	Median	2028600000	1308700000	719920000	399840000	269570000	130270000	524790000	347010000	177780000	571990000	375630000	196360000	531980000	316470000	215500000	23250	4326	22018	145428;145429;145430;145431	196567;196568;196569;196570;196571;196572	196568			6	
IADREDEYK	1	Unmodified	1137.5302	0.53021729	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	10.048	9.5808	2	0.032923	7131	160511_QHF_FH_JSI11i_2	56.432	16.43			0.91176	1.0021	15.507	4	0	Median	1.3962	1.1807	NaN	1	0	Median	0.76692	0.93542	NaN	1	0	Median	1.084	1.0735	NaN	1	0	Median	0.75567	0.82908	NaN	1	0	Median	112540000	55463000	57080000	22073000	8311100	13762000	37937000	20775000	17161000	32914000	14368000	18546000	19619000	12008000	7611000	23251	542	22019	145432;145433;145434;145435	196573	196573			1	
IADREDEYKK	2	Unmodified	1265.6252	0.62518031	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		8.2658	8.028	2;3	0.0021878	5585	160511_QHF_FH_JSI11i_3	63.944	34.177			0.75487	0.8179	36.574	4	0	Median	1.5673	1.4027	NaN	1	0	Median	0.732	0.9089	NaN	1	0	Median	0.70689	0.66216	14.952	2	0	Median	NaN	NaN	NaN	0	0	Median	561680000	347180000	214510000	48143000	24617000	23526000	88672000	42092000	46580000	424870000	280470000	144400000	0	0	0	23252	542	22020	145436;145437;145438;145439	196574;196575;196576;196577	196574			4	
IADRLGLELGK	1	Unmodified	1183.6925	0.69247202	1920	P60891;P21108	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			50.061	48.493	3	0.0020466	39566	160511_QHF_FH_JSI9i_3	55.261	30.408			1.3093	1.5278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3093	1.5278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	237520000	102710000	134810000	0	0	0	237520000	102710000	134810000	0	0	0	0	0	0	23253	1920	22021	145440;145441	196578;196579	196579			2	
IADVVLLQK	1	Unmodified	997.61718	0.61718181	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	56.717	55.88	2	0.0034855	47902	160511_QHF_FH_JSI12i_2	60.118	41.015			1.0415	1.1454	19.764	5	0	Median	1.6784	1.4623	NaN	1	0	Median	1.0986	1.3766	NaN	1	0	Median	0.98973	0.96551	7.667	2	0	Median	1.0415	1.1454	NaN	1	0	Median	219810000	99844000	119970000	33673000	13913000	19759000	41329000	17920000	23409000	89089000	42701000	46389000	55722000	25310000	30413000	23254	2547	22022	145442;145443;145444;145445;145446	196580	196580			1	
IADYEAASAVPGVAAEQPGVSPSGS	0	Unmodified	2329.1074	0.10738478	5660	Q9Y5J6	TIMM10B	Mitochondrial import inner membrane translocase subunit Tim10 B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.787	69.529	3	0.0059947	62999	160511_QHF_FH_JSI10i_1	32.146	23.099			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23255	5660	22023	145447	196581	196581			1	
IAEAGSR	0	Unmodified	702.36605	0.3660525	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	4.9584	4.6702	2	0.019217	2471	160511_QHF_FH_JSI11i_1	58.687	14.267			0.99974	0.97679	5.0891	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0268	1.0199	6.2735	2	0	Median	0.88418	0.97679	NaN	1	1	Median	5152000000	2541700000	2610300000	0	0	0	0	0	0	4127900000	2009900000	2118000000	1024200000	531850000	492310000	23256	1421;1272	22024	145448;145449;145450	196582;196583;196584	196582			3	
IAEAYQMLKK	2	Oxidation (M)	1209.6427	0.64274463	5356	Q9UJY5	GGA1	ADP-ribosylation factor-binding protein GGA1	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			68.918	61.242	2	0.029264	33609	160513_QHF_FH_JSI10Kac_6	51.854	26.932			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14203000	14203000	0	0	0	0	14203000	14203000	0	0	0	0	0	0	0	23257	5356	22025	145451	196585	196585			1	
IAEENGAAFAGGTSLIQK	1	Unmodified	1775.9054	0.90537792	4546	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.395	59.516	2;3	1.4938E-05	54215	160511_QHF_FH_JSI12i_1	97.797	71.68			0.58221	0.54408	126.8	2	2	Median	1.6088	1.3337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2107	0.22195	NaN	1	1	Median	84690000	40245000	44446000	62996000	22950000	40047000	0	0	0	0	0	0	21694000	17295000	4399100	23258	4546	22026	145452;145453	196586;196587	196586			2	
IAEESNFPFIK	1	Unmodified	1293.6605	0.66050319	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			69.805	69.008	2	0.012556	61302	160511_QHF_FH_JSI10i_2	54.539	35.759			2.1711	2.6381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1711	2.6381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195770000	55262000	140510000	0	0	0	195770000	55262000	140510000	0	0	0	0	0	0	23259	1586	22027	145454	196588	196588			1	
IAEFAFEYAR	0	Unmodified	1215.5924	0.59242362	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.712	64.811	2	0.0092789	56504	160511_QHF_FH_JSI11i_2	49.16	37.312			0.93031	0.96575	17.651	4	0	Median	1.2265	1.0723	NaN	1	0	Median	0.61893	0.75689	NaN	1	0	Median	0.87614	0.86979	NaN	1	0	Median	0.98783	1.0946	NaN	1	0	Median	206860000	107240000	99629000	28271000	12378000	15893000	48952000	27190000	21762000	65979000	35485000	30494000	63663000	32183000	31480000	23260	1698	22028	145455;145456;145457;145458	196589;196590;196591;196592	196591			4	
IAEFTTNLTEEEEK	1	Unmodified	1652.7781	0.77811172	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	2.78	5	6	4			1				3	5	4	4	56.123	54.555	2	6.844E-52	49094	160511_QHF_FH_JSI10i_1	250.94	220.68			0.86697	0.94374	20.286	12	7	Median	1.1816	0.98838	3.6932	2	0	Median	0.84977	0.98561	9.0014	5	3	Median	0.88451	0.85818	31.524	3	2	Median	0.68891	0.73232	23.257	2	2	Median	5957800000	3278300000	2679500000	1441000000	725750000	715230000	1467700000	779170000	688500000	911680000	437710000	473970000	2137400000	1335700000	801750000	23261	1436	22029	145459;145460;145461;145462;145463;145464;145465;145466;145467;145468;145469;145470;145471;145472;145473;145474	196593;196594;196595;196596;196597;196598;196599;196600;196601;196602;196603;196604;196605;196606;196607;196608;196609;196610;196611;196612;196613;196614;196615;196616;196617	196606			25	
IAEGAQQGDPLSR	0	Unmodified	1340.6684	0.66844211	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	27.363	26.807	2	0.01738	23956	160511_QHF_FH_JSI12i_1	50.275	39.903			1.1633	1.1976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1633	1.1976	NaN	1	1	Median	117720000	56504000	61219000	0	0	0	0	0	0	0	0	0	117720000	56504000	61219000	23262	5338	22030	145475	196618	196618			1	
IAEGEHPK	1	Unmodified	879.44503	0.4450311	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	5.4006	4.9114	2	0.0045508	2812	160511_QHF_FH_JSI11i_2	67.169	41.343			0.97351	1.1258	47.081	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3068	1.5706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72522	0.80703	NaN	1	0	Median	236540000	115130000	121410000	0	0	0	92212000	39789000	52423000	0	0	0	144330000	75341000	68986000	23263	3708	22031	145476;145477;145478	196619;196620;196621	196620			3	
IAEGFSDTALIMVDNTK	1	Unmodified	1823.8975	0.89751535	330	O43402	EMC8	ER membrane protein complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.112	82.647	3	6.054E-05	74926	160511_QHF_FH_JSI10i_1	82.707	73.291			0.93376	0.99959	13.6	4	4	Median	1.2667	1.0185	NaN	1	1	Median	0.91285	1.0563	NaN	1	1	Median	0.8144	0.78094	NaN	1	1	Median	0.95515	0.98106	NaN	1	1	Median	115450000	60516000	54936000	20076000	9484000	10592000	38621000	22120000	16501000	25661000	12000000	13660000	31094000	16912000	14182000	23264	330	22032	145479;145480;145481;145482	196622;196623;196624;196625	196624			4	
IAEGVNSLLQMAGLLAR	0	Unmodified	1754.9713	0.97128941	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	3	3	2	102.25	102.18	2;3	2.7868E-81	89013	160511_QHF_FH_JSI12i_3	250.8	216.91			1.0087	1.0414	25.42	9	1	Median	1.3373	1.1276	NaN	1	0	Median	1.3021	1.462	28.954	3	0	Plateau	1.1352	1.065	31.055	3	1	Plateau	0.94221	0.96875	10.23	2	0	Median	1589500000	780570000	808890000	34454000	12987000	21467000	401700000	188050000	213650000	537450000	262090000	275360000	615850000	317440000	298420000	23265	1429	22033	145483;145484;145485;145486;145487;145488;145489;145490;145491	196626;196627;196628;196629;196630;196631;196632;196633;196634	196633			4	
IAEITHLQQQLQESQQMLGR	0	Unmodified	2350.2063	0.20632774	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									1	3	78.693	78.216	3	1.3318E-14	67873	160511_QHF_FH_JSI12i_3	149.72	141.12		+	1.1147	1.0982	22.459	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0234	0.97062	NaN	1	0	Median	1.2842	1.3742	14.241	2	0	Median	221900000	110470000	111420000	0	0	0	0	0	0	108690000	57516000	51178000	113200000	52957000	60246000	23266	2711	22034	145492;145493;145494;145495	196635;196636;196637;196638	196637			4	
IAEKGSTIETEQK	2	Acetyl (K)	1474.7515	0.75150304	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	0.471					4	8				2	4	4	2	31.63	21.468	2;3	1.3191E-12	5709	160513_QHF_FH_JSI9Kac_3	131.17	114.97			0.5067	0.49702	95.414	11	0	Median	2.8111	2.3015	NaN	1	0	Median	1.9232	2.3121	10.528	4	0	Linear	0.44588	0.366	17.921	4	0	Linear	0.33938	0.37041	6.0036	2	0	Median	474860000	231370000	243490000	119500000	21641000	97860000	124550000	41220000	83334000	123900000	84905000	38995000	106910000	83605000	23301000	23267	3570	22035	145496;145497;145498;145499;145500;145501;145502;145503;145504;145505;145506;145507	196639;196640;196641;196642;196643;196644;196645;196646;196647;196648;196649;196650;196651;196652	196642	2887		14	
IAELCANSIK	1	Unmodified	1117.5801	0.58014438	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.157	37.713	2	0.0005431	32176	160511_QHF_FH_JSI11i_2	71.349	47.921			0.57516	0.60148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57516	0.60148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78362000	46056000	32305000	0	0	0	0	0	0	78362000	46056000	32305000	0	0	0	23268	1085	22036	145508	196653;196654	196653			2	
IAELLENVTLIHKPVSLQPR	1	Unmodified	2269.3158	0.31580184	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			81.762	80.443	4	6.4123E-05	67473	160511_QHF_FH_JSI10i_3	66.152	62.348			2.0232	2.3026	127.23	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0232	2.3026	127.23	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36753000	17617000	19136000	0	0	0	36753000	17617000	19136000	0	0	0	0	0	0	23269	2567	22037	145509;145510	196655;196656	196656			2	
IAELLSPGSVDPLTR	0	Unmodified	1566.8617	0.86172219	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.31	8	8	5				3	3		6	8	7	6	80.567	77.637	2;3	3.7864E-21	70767	160511_QHF_FH_JSI10i_2	169.52	138.91			0.99081	1.0368	5.8417	26	0	Median	1.2168	1.0075	1.7216	6	0	Median	0.88293	1.0673	6.8262	7	0	Median	1.0562	1.0347	3.9282	7	0	Median	0.95813	1.0485	8.6117	6	0	Median	6959000000	3527200000	3431700000	1327700000	612100000	715640000	2059400000	1102300000	957080000	2223600000	1092300000	1131200000	1348300000	720530000	627770000	23270	1425	22038	145511;145512;145513;145514;145515;145516;145517;145518;145519;145520;145521;145522;145523;145524;145525;145526;145527;145528;145529;145530;145531;145532;145533;145534;145535;145536;145537	196657;196658;196659;196660;196661;196662;196663;196664;196665;196666;196667;196668;196669;196670;196671;196672;196673;196674;196675;196676;196677;196678;196679;196680;196681;196682;196683;196684;196685;196686;196687;196688;196689;196690;196691;196692;196693;196694;196695;196696;196697;196698;196699;196700;196701;196702;196703;196704;196705	196699			49	
IAELLTELHQLIK	1	Unmodified	1519.8974	0.89737941	4057	Q96ES7	CCDC101	SAGA-associated factor 29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	99.692	99.52	3	0.00093691	87511	160511_QHF_FH_JSI11i_2	62.924	55.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18160000	8991200	9169200	2357500	0	2357500	0	0	0	7601900	3872000	3730000	8200900	5119200	3081600	23271	4057	22039	145538;145539;145540;145541;145542	196706;196707;196708;196709;196710	196710			5	
IAELMPGASGAEVK	1	Unmodified	1371.7068	0.70680145	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	10	4					2			3	3	5	5	51.49	49.483	2;3	5.3934E-05	44765	160511_QHF_FH_JSI11i_1	117.09	86.404			1.0207	1.053	21.543	16	8	Median	1.6594	1.3966	27.098	3	2	Median	0.79872	0.9328	9.9077	3	0	Median	1.0449	1.0309	24.227	5	3	Median	1.0197	1.0794	12.382	5	3	Median	4079200000	2114100000	1965200000	644850000	271060000	373790000	711210000	399920000	311290000	1448900000	792930000	655960000	1274300000	650160000	624110000	23272	1984	22040	145543;145544;145545;145546;145547;145548;145549;145550;145551;145552;145553;145554;145555;145556;145557;145558	196711;196712;196713;196714;196715;196716;196717;196718;196719;196720;196721;196722;196723;196724;196725;196726;196727;196728;196729;196730;196731;196732	196713			22	
IAELMPGASGAEVK	1	Oxidation (M)	1387.7017	0.70171607	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				38.324	37.108	2	0.0074921	32789	160511_QHF_FH_JSI9i_1	57.348	42.198			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23273	1984	22040	145559	196733	196733		1648	1	
IAENLGDVQISDK	1	Unmodified	1400.7147	0.7147236	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	51.025	50.261	2	4.2681E-06	44600	160511_QHF_FH_JSI9i_1	124.21	67.848			0.96103	0.99647	7.1955	3	2	Median	1.3184	1.0876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96103	0.94297	NaN	1	1	Median	0.94378	0.99647	NaN	1	0	Median	472090000	232250000	239840000	156170000	58248000	97923000	0	0	0	173570000	95839000	77732000	142350000	78164000	64181000	23274	4620	22041	145560;145561;145562	196734;196735;196736	196736			3	
IAENNDLLWMDYHQK	1	Unmodified	1888.8778	0.87778296	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	63.704	62.799	3	1.8366E-05	54616	160511_QHF_FH_JSI11i_2	113.59	106.86			0.79805	0.83668	7.3015	4	0	Median	0.96237	0.82804	NaN	1	0	Median	0.7655	0.95131	NaN	1	0	Median	0.83199	0.80621	NaN	1	0	Median	0.76319	0.84541	NaN	1	0	Median	406160000	216350000	189810000	44178000	19412000	24765000	109900000	61709000	48193000	148680000	87435000	61248000	103400000	47790000	55606000	23275	146	22042	145563;145564;145565;145566;145567	196737;196738;196739;196740;196741;196742;196743;196744;196745;196746	196744			10	
IAEQLGDGDEVIEK	1	Unmodified	1514.7464	0.74641766	3895	Q92871	PMM1	Phosphomannomutase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		46.833	46.417	2	7.0551E-05	41959	160511_QHF_FH_JSI11i_1	116.01	101.04			0.75105	0.72033	33.556	3	3	Median	NaN	NaN	NaN	0	0	Median	0.43826	0.50625	NaN	1	1	Median	0.88047	0.84452	22.496	2	2	Median	NaN	NaN	NaN	0	0	Median	88441000	55022000	33419000	0	0	0	14281000	9765400	4515600	74160000	45257000	28904000	0	0	0	23276	3895	22043	145568;145569;145570	196747;196748;196749	196747			3	
IAEQVASFQEEK	1	Unmodified	1377.6776	0.67760981	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	3	1	2	40.445	37.221	2	9.7171E-06	33424	160511_QHF_FH_JSI11i_1	118.9	95.529			0.92882	1.0241	34.202	7	1	Median	1.6329	1.3505	NaN	1	0	Median	0.83607	0.94555	43.249	3	1	Median	1.1347	1.1037	NaN	1	0	Median	1.0213	1.0875	10.411	2	0	Median	2484000000	1358100000	1125900000	490200000	218740000	271460000	728770000	434330000	294440000	686320000	388460000	297860000	578710000	316540000	262170000	23277	1421	22044	145571;145572;145573;145574;145575;145576;145577	196750;196751;196752;196753;196754;196755;196756;196757;196758;196759;196760	196751			11	
IAESIPYLK	1	Unmodified	1032.5855	0.58554733	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	2	2	2	59.44	57.341	2	0.0001986	51647	160511_QHF_FH_JSI10i_1	85.212	56.063			1.059	0.97981	11.568	7	2	Median	1.1153	0.91634	NaN	1	0	Median	0.77009	0.93266	6.9749	2	1	Median	1.0614	1.0563	13.949	2	1	Median	1.0748	1.1432	0.53904	2	0	Median	957600000	465220000	492380000	109120000	51759000	57358000	318270000	150030000	168240000	384760000	192930000	191830000	145450000	70500000	74952000	23278	2307	22045	145578;145579;145580;145581;145582;145583;145584	196761;196762;196763;196764;196765;196766;196767;196768	196762			8	
IAESNHIK	1	Unmodified	910.48723	0.48723027	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.45	4.98		8	1					2		2	2	3	4	7.7682	5.7594	2;3	0.00060559	4887	160511_QHF_FH_JSI9i_2	71.501	44.247			0.90384	1.0018	46.427	11	0	Median	0.63703	0.54412	10.93	2	0	Median	0.56887	0.70053	15.975	2	0	Median	1.8579	1.8887	4.3972	3	0	Plateau	0.97568	1.0492	9.3621	4	0	Median	3555300000	1763200000	1792100000	624600000	369340000	255260000	819450000	539750000	279700000	1271600000	435620000	835940000	839650000	418450000	421200000	23279	361	22046	145585;145586;145587;145588;145589;145590;145591;145592;145593;145594;145595	196769;196770;196771;196772;196773;196774;196775;196776;196777;196778;196779;196780;196781;196782;196783;196784	196775			16	
IAESTEWQEKHK	2	Acetyl (K)	1526.7365	0.73652168	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		35.269	25.449	3	0.012173	15025	160513_QHF_FH_JSI11Kac_5	48.948	42.067			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2113800	2113800	0	0	0	0	0	0	0	2113800	2113800	0	0	0	0	23280	2574	22047	145596	196785	196785	2545		1	
IAETDFEK	1	Unmodified	951.45493	0.45492709	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	30.951	27.646	2	0.014788	23940	160511_QHF_FH_JSI9i_1	51.066	17.27			1.219	1.2736	20.43	6	0	Median	1.2433	0.99681	NaN	1	0	Median	1.1952	1.4325	NaN	1	0	Median	1.3025	1.2583	24.064	2	0	Median	1.2568	1.3613	26.041	2	0	Median	1128800000	577600000	551200000	254930000	118930000	135990000	293710000	145610000	148100000	297100000	150150000	146960000	283060000	162900000	120160000	23281	4294	22048	145597;145598;145599;145600;145601;145602	196786;196787;196788;196789;196790;196791;196792;196793	196792			8	
IAEVDASVVR	0	Unmodified	1057.5768	0.57677356	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	36.624	36.017	2	0.0027736	32641	160511_QHF_FH_JSI12i_1	57.859	29.685			0.51238	0.61377	14.232	4	0	Linear	0.80672	0.65979	NaN	1	0	Median	0.46114	0.54459	NaN	1	0	Median	0.58595	0.57096	NaN	1	0	Median	0.69867	0.74467	NaN	1	0	Median	2655100000	1549100000	1106000000	447450000	180920000	266530000	801860000	546250000	255610000	748730000	448400000	300340000	657070000	373560000	283510000	23282	1379	22049	145603;145604;145605;145606;145607	196794;196795;196796	196794			2	
IAEVDCTAER	0	Unmodified	1162.5288	0.52883709	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.719	17.233	2	5.1985E-05	14833	160511_QHF_FH_JSI12i_1	104.2	66.473			1.0777	0.9868	19.184	4	3	Median	1.1151	0.9243	NaN	1	1	Median	0.79687	0.95208	NaN	1	1	Median	1.0417	1.0228	NaN	1	0	Median	1.3315	1.4036	NaN	1	1	Median	789110000	395860000	393250000	160520000	78284000	82240000	222710000	132840000	89877000	184150000	86782000	97364000	221730000	97955000	123770000	23283	3603	22050	145608;145609;145610;145611	196797;196798;196799;196800	196798			4	
IAEVGAGGNK	1	Unmodified	914.48214	0.48214489	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		10.754	10.37	2	0.00027483	7871	160511_QHF_FH_JSI9i_1	79.596	52.634			7.9101	2.1303	65.166	3	2	Plateau	7.9101	6.4988	NaN	1	0	Median	1.8069	2.1303	NaN	1	1	Median	2.1182	2.0752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	379500000	128310000	251190000	109100000	15694000	93407000	142990000	65446000	77543000	127410000	47171000	80242000	0	0	0	23284	2152	22051	145612;145613;145614	196801;196802;196803	196803			3	
IAEVGGVPYLLPLVNQK	1	Unmodified	1809.04	0.040020906	4646	Q9H0W9	C11orf54	Ester hydrolase C11orf54	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	100.97	100.86	3	5.2278E-06	88548	160511_QHF_FH_JSI11i_2	97.45	91.418			0.77972	0.83367	11.787	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.64769	0.74961	NaN	1	1	Median	0.91576	0.92194	NaN	1	1	Median	0.66389	0.75385	NaN	1	1	Median	162740000	92680000	70058000	0	0	0	39028000	21390000	17638000	72089000	39692000	32397000	51621000	31598000	20023000	23285	4646	22052	145615;145616;145617;145618	196804;196805;196806;196807	196806			4	
IAFAITAIK	1	Unmodified	946.58515	0.5851534	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	6.42	2	8	5			1	2	3	5	7	7	7	5	73.452	68.659	1;2	2.2076E-05	61456	160511_QHF_FH_JSI12i_3	106.04	78.517			1.1598	1.1093	17.725	26	0	Median	1.3321	1.1327	10.514	7	0	Median	0.85601	1.0478	27.152	7	0	Median	1.1736	1.1528	20.009	7	0	Median	1.0281	1.1479	9.0209	5	0	Median	22887000000	10214000000	12672000000	4537300000	1721900000	2815400000	6058800000	2944400000	3114300000	6661700000	2986400000	3675300000	5629100000	2561700000	3067400000	23286	1993	22053	145619;145620;145621;145622;145623;145624;145625;145626;145627;145628;145629;145630;145631;145632;145633;145634;145635;145636;145637;145638;145639;145640;145641;145642;145643;145644	196808;196809;196810;196811;196812;196813;196814;196815;196816;196817;196818;196819;196820;196821;196822;196823;196824;196825;196826;196827;196828;196829;196830;196831;196832;196833;196834;196835;196836;196837;196838;196839;196840;196841;196842;196843;196844;196845;196846;196847;196848;196849;196850;196851;196852;196853;196854;196855;196856;196857;196858;196859;196860;196861;196862;196863;196864;196865;196866;196867	196862			56	
IAFDAESDPSNAPGSGTEK	1	Unmodified	1891.8436	0.84356552	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			42.309	41.898	2	2.5747E-32	37141	160511_QHF_FH_JSI9i_1	145.6	130.73			0.80979	0.90759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80979	0.90759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20349000	13391000	6957700	0	0	0	20349000	13391000	6957700	0	0	0	0	0	0	23287	4141	22054	145645;145646	196868;196869;196870	196870			3	
IAFGGETDEATR	0	Unmodified	1265.5888	0.58879481	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								1	3	3	2	34.288	33.599	2	0.00057604	30105	160511_QHF_FH_JSI11i_1	72.006	59.417			1.3803	1.2658	31.119	4	1	Median	1.3469	1.1382	NaN	1	0	Median	1.1573	1.3886	50.929	2	1	Median	1.4146	1.4077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	522830000	271870000	250960000	49673000	18563000	31110000	412470000	224320000	188150000	60684000	28985000	31699000	0	0	0	23288	1745	22055	145647;145648;145649;145650;145651;145652;145653;145654;145655	196871;196872;196873;196874;196875;196876;196877;196878	196871			8	
IAFGGHQR	0	Unmodified	884.46168	0.46168422	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				12.5	11.703	3	0.037682	9060	160511_QHF_FH_JSI9i_3	22.386	13.614			0.98943	0.8147	NaN	1	0	Median	0.98943	0.8147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67716000	32637000	35080000	67716000	32637000	35080000	0	0	0	0	0	0	0	0	0	23289	2560	22056	145656	196879	196879			1	
IAFIAWK	1	Unmodified	847.49561	0.49561011	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	74.784	70.178	2	0.024981	36820	160513_QHF_FH_JSI9Kac_6	71.359	45.25			0.93208	0.96797	6.0257	8	0	Median	1.1203	0.93141	8.7509	2	0	Median	0.88378	1.0183	5.7739	2	0	Median	1.0027	0.94695	6.2977	2	0	Median	0.91868	0.94204	2.4444	2	0	Median	607330000	316000000	291330000	140140000	61647000	78490000	155220000	91022000	64195000	192360000	102040000	90322000	119610000	61287000	58324000	23290	2977	22057	145657;145658;145659;145660;145661;145662;145663;145664	196880;196881;196882;196883;196884;196885;196886;196887;196888;196889	196885			10	
IAFIFNNLSQSNMTQK	1	Unmodified	1854.9298	0.92981853	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		84.418	83.675	2;3	4.5021E-15	74708	160511_QHF_FH_JSI11i_3	159.99	141.85			1.1384	0.94749	60.066	5	3	Median	0.89083	0.73222	36.449	2	1	Median	1.4805	1.8023	NaN	1	1	Median	1.4164	1.3386	81.196	2	1	Median	NaN	NaN	NaN	0	0	Median	93630000	39704000	53926000	39610000	19282000	20328000	6340600	2298700	4041900	47679000	18123000	29556000	0	0	0	23291	21	22058	145665;145666;145667;145668;145669	196890;196891;196892;196893;196894;196895	196890			6	
IAFILYLVPPWDR	0	Unmodified	1601.897	0.89698548	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.261	90.834	2	1.3251E-20	54035	160513_QHF_FH_JSI10Kac_6	159.83	126.6			1.0846	1.0759	36.449	2	0	Median	0.99062	0.83145	NaN	1	0	Median	1.1876	1.3922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	420340000	209460000	210880000	182930000	91270000	91663000	237410000	118190000	119220000	0	0	0	0	0	0	23292	3536	22059	145670;145671	196896;196897;196898;196899	196899			4	
IAFPSANEVFYNPVQEFNR	0	Unmodified	2241.0855	0.085467549	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	100.96	100.84	2	2.0098E-13	89355	160511_QHF_FH_JSI10i_2	148.57	123.39			0.99561	0.98838	20.892	4	0	Median	1.0682	0.92435	NaN	1	0	Median	0.5726	0.6833	NaN	1	0	Median	1.0556	1.0568	NaN	1	0	Median	0.93906	1.0715	NaN	1	0	Median	186610000	97350000	89264000	34137000	15945000	18192000	64230000	38960000	25270000	53044000	25675000	27369000	35203000	16770000	18433000	23293	5108	22060	145672;145673;145674;145675	196900;196901	196901			1	
IAFPYLYNNLPHHVHLTWYHTPNVVFIK	1	Unmodified	3432.7924	0.79240784	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				92.093	83.315	5	0.01404	46791	160513_QHF_FH_JSI9Kac_6	38.006	30.998			0.30971	0.26465	NaN	1	1	Median	0.30971	0.26465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89640000	73392000	16248000	89640000	73392000	16248000	0	0	0	0	0	0	0	0	0	23294	3101	22061	145676	196902	196902			1	
IAFQFTPYSWVR	0	Unmodified	1513.7718	0.77178497	4470	Q9BVG9	PTDSS2	Phosphatidylserine synthase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	89.306	81.14	2	0.0022379	43210	160513_QHF_FH_JSI12Kac_6	70.1	49.796			0.76642	0.90736	15.767	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7605	0.90736	NaN	1	0	Median	1.0845	1.0642	NaN	1	0	Median	1.1516	1.2437	NaN	1	0	Median	191310000	101970000	89336000	0	0	0	125880000	72662000	53223000	39316000	16665000	22651000	26105000	12643000	13462000	23295	4470	22062	145677;145678;145679	196903;196904;196905	196904			2	
IAFSSTSLLK	1	Unmodified	1065.607	0.60701105	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	2	2	3	2	66.223	63.625	2	2.6315E-05	56264	160511_QHF_FH_JSI11i_3	97.431	61.035			0.87482	1.1754	22.567	9	0	Plateau	0.90555	0.77694	22.127	2	0	Median	0.89928	1.0609	1.4888	2	0	Median	1.2375	1.1477	29.361	3	0	Plateau	0.97655	1.0508	19.225	2	0	Median	1611100000	797050000	814030000	130520000	64171000	66349000	331160000	179990000	151170000	530840000	241950000	288890000	618560000	310940000	307620000	23296	5552	22063	145680;145681;145682;145683;145684;145685;145686;145687;145688	196906;196907;196908;196909;196910;196911;196912;196913;196914;196915;196916	196907			10	
IAFTEWIEPPKR	1	Unmodified	1485.798	0.79799972	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	4	2	2	74.252	73.537	2;3	2.2552E-11	65521	160511_QHF_FH_JSI11i_3	125.28	109.9			0.76521	0.86254	17.069	7	1	Median	1.0561	0.9551	NaN	1	0	Median	0.76521	0.86254	18.618	3	0	Plateau	1.1357	1.0829	NaN	1	0	Median	0.74127	0.77213	2.1488	2	1	Median	746420000	380020000	366390000	47073000	22994000	24079000	181420000	107400000	74027000	418160000	190220000	227940000	99755000	59410000	40346000	23297	403	22064	145689;145690;145691;145692;145693;145694;145695;145696;145697;145698;145699	196917;196918;196919;196920;196921;196922;196923;196924;196925;196926;196927;196928;196929;196930;196931;196932;196933;196934;196935	196920			19	
IAFWDDVYGFK	1	Unmodified	1359.6499	0.6499385	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.288	94.966	2	0.010546	84222	160511_QHF_FH_JSI10i_2	47.187	34.571			1.0403	1.0859	14.462	4	1	Median	1.4395	1.2366	NaN	1	1	Median	0.75093	0.91784	NaN	1	0	Median	0.99323	0.98777	NaN	1	0	Median	1.0897	1.1938	NaN	1	0	Median	86741000	38024000	48717000	10939000	5480700	5458500	23430000	10353000	13077000	30262000	12532000	17730000	22109000	9658200	12451000	23298	438	22065	145700;145701;145702;145703	196936;196937;196938;196939	196939			2	
IAGAGLLFVGGGIGGTILYAK	1	Unmodified	1947.1193	0.11933386	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									9	2		5	2	97.24	87.937	2;3	1.0387E-37	48916	160513_QHF_FH_JSI11Kac_6	229.97	212.81			1.0802	0.96054	26.675	6	0	Median	1.1207	0.96054	5.2275	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1359	1.0708	9.6194	2	0	Median	0.60843	0.6461	24.691	2	0	Median	616840000	285700000	331150000	122150000	50289000	71860000	0	0	0	371740000	160550000	211190000	122950000	74860000	48095000	23299	2780	22066	145704;145705;145706;145707;145708;145709;145710;145711;145712	196940;196941;196942;196943;196944;196945;196946;196947;196948;196949;196950	196942			11	
IAGDYVSEEVWYR	0	Unmodified	1585.7413	0.7412727	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	67.059	66.365	2	2.7699E-05	60219	160511_QHF_FH_JSI10i_1	137.17	119.73			0.89567	0.95282	11.052	6	0	Median	1.2343	1.046	NaN	1	0	Median	0.83528	0.96671	NaN	1	0	Median	1.0598	1.0486	15.59	2	0	Median	0.82986	0.88928	6.5751	2	0	Median	436030000	221690000	214340000	71149000	30250000	40900000	99968000	55567000	44402000	144420000	69747000	74672000	120490000	66127000	54367000	23300	726;635	22067	145713;145714;145715;145716;145717;145718	196951;196952;196953;196954;196955;196956;196957;196958;196959;196960	196957			10	
IAGEASR	0	Unmodified	702.36605	0.3660525	1235;1902;2915	Q16778;P23527;P06899;P33778;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST1H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.4	0.49	3	2								2	2		1	4.9962	4.6046	2	0.0099713	2639	160511_QHF_FH_JSI10i_1	76.847	19.383			1.1717	1.1243	19.985	5	0	Median	1.2639	1.064	7.8018	2	0	Median	1.2202	1.4733	7.3669	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92774	0.99478	NaN	1	0	Median	7027000000	3224100000	3802900000	1617900000	707950000	909930000	3753700000	1620600000	2133100000	0	0	0	1655400000	895530000	759870000	23301	1235;1902;2915	22068	145719;145720;145721;145722;145723	196961;196962;196963;196964;196965	196964			5	
IAGELYGPLMLVFTLVAILLHGMK	1	Oxidation (M)	2614.4631	0.4630597	4593	Q9GZM5	YIPF3	Protein YIPF3;Protein YIPF3, 36 kDa form III	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			106.65	100.93	3	1.0103E-12	59828	160513_QHF_FH_JSI10Kac_6	141.47	121.4			0.58007	0.68324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58007	0.68324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45096000	31437000	13660000	0	0	0	45096000	31437000	13660000	0	0	0	0	0	0	23302	4593	22069	145724	196966	196966		2497	1	
IAGFDER	0	Unmodified	806.39227	0.39226725	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.4	0.49	3	2								1	2	1	1	23.913	23.259	2	0.064523	19352	160511_QHF_FH_JSI11i_2	40.103	12.983			0.97117	1.0652	11.36	5	0	Median	1.2033	0.98732	NaN	1	0	Median	0.92268	1.1069	5.4342	2	0	Median	1.1664	1.19	NaN	1	0	Median	0.89125	0.90022	NaN	1	0	Median	1269500000	599930000	669550000	107250000	51165000	56086000	515340000	255540000	259800000	467090000	203990000	263100000	179800000	89239000	90558000	23303	2094	22070	145725;145726;145727;145728;145729	196967	196967			1	
IAGFDSIFKK	2	Unmodified	1124.623	0.62299547	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	64.322	63.224	3	0.0055447	53011	160511_QHF_FH_JSI10i_3	48.284	33.617			0.79118	0.79103	12.378	3	2	Median	1.1543	0.95665	NaN	1	0	Median	0.64827	0.75828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79118	0.79103	NaN	1	1	Median	58872000	37979000	20893000	17382000	9874500	7507300	14942000	9447500	5494800	0	0	0	26548000	18657000	7890900	23304	3930	22071	145730;145731;145732	196968;196969;196970	196968			3	
IAGGAVR	0	Unmodified	642.38131	0.38130863	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.756	2	3	2							1	3	3		9.7407	9.4173	2	0.040678	8636	160511_QHF_FH_JSI11i_3	47.045	47.045			0.81356	0.85002	20.307	7	0	Median	1.3282	1.1067	NaN	1	0	Median	0.69644	0.85002	26.546	3	0	Median	0.81356	0.79436	8.7518	3	0	Median	NaN	NaN	NaN	0	0	Median	3346500000	1747900000	1598600000	598410000	252720000	345690000	1091200000	616700000	474460000	1656900000	878510000	778440000	0	0	0	23305	4204	22072	145733;145734;145735;145736;145737;145738;145739	196971;196972;196973;196974;196975	196971			5	
IAGHPLAQNER	0	Unmodified	1204.6313	0.63126874	5430	Q9UMY4	SNX12	Sorting nexin-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.19		1	7						4	4	3	3	2	12.087	9.2818	2;3	1.1452E-06	7815	160511_QHF_FH_JSI10i_3	99.343	56.625			0.93183	1.0306	19.512	12	1	Median	1.5202	1.29	9.3724	4	0	Median	0.93819	1.0544	5.2729	3	0	Median	0.79685	0.75354	9.445	3	1	Plateau	0.82908	0.88332	1.7009	2	0	Median	1605600000	794830000	810810000	614940000	255760000	359180000	572320000	289750000	282570000	279900000	170350000	109550000	138490000	78980000	59513000	23306	5430	22073	145740;145741;145742;145743;145744;145745;145746;145747;145748;145749;145750;145751	196976;196977;196978;196979;196980;196981;196982;196983;196984;196985;196986;196987;196988;196989;196990;196991;196992;196993;196994	196979			19	
IAGLAVSLTK	1	Unmodified	971.60153	0.60153174	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	57.685	57.557	2	0.00161	49480	160511_QHF_FH_JSI12i_3	64.841	31.948			1.3082	1.2638	0.51861	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3453	1.2684	NaN	1	0	Median	1.2721	1.2591	NaN	1	0	Median	549130000	253170000	295950000	0	0	0	0	0	0	196100000	82263000	113840000	353030000	170910000	182120000	23307	3840	22074	145752;145753	196995	196995			1	
IAGPGLGSGVR	0	Unmodified	982.55598	0.55597854	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		31.451	30.523	2	0.001981	25433	160511_QHF_FH_JSI10i_3	59.597	24.103			1.2076	0.98536	17.515	3	0	Plateau	1.5374	1.2722	NaN	1	0	Median	0.84274	0.98536	NaN	1	0	Median	0.94857	0.90975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	916570000	449960000	466610000	316230000	122970000	193260000	289790000	152140000	137650000	310540000	174850000	135700000	0	0	0	23308	512	22075	145754;145755;145756	196996;196997	196997			2	
IAGQVAAANK	1	Unmodified	941.52943	0.52942943	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	5.5	3	4	4		2	3	3			3	5	5	6	13.385	9.9053	2	3.1666E-06	8487	160511_QHF_FH_JSI9i_1	110.81	67.741			0.96739	1.0158	15.169	19	1	Median	1.4098	1.1271	12.597	3	0	Median	0.85747	1.0335	11.95	5	0	Median	1.0283	1.0158	14.168	5	0	Median	0.79282	0.88167	16.95	6	1	Median	23121000000	10233000000	12888000000	5586900000	2340800000	3246100000	1542400000	829090000	713260000	8556800000	3241200000	5315500000	7435100000	3821800000	3613300000	23309	1483	22076	145757;145758;145759;145760;145761;145762;145763;145764;145765;145766;145767;145768;145769;145770;145771;145772;145773;145774;145775	196998;196999;197000;197001;197002;197003;197004;197005;197006;197007;197008;197009;197010;197011;197012;197013;197014;197015;197016;197017;197018;197019;197020;197021;197022;197023;197024;197025;197026;197027	197012			30	
IAGQVAAANKK	2	Unmodified	1069.6244	0.62439245	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		8.4709	8.0477	2;3	0.00092574	5858	160511_QHF_FH_JSI10i_3	55.353	45.936			0.59745	0.62149	77.786	4	2	Median	3.4788	2.8611	NaN	1	1	Median	0.51237	0.58918	3.6629	2	1	Median	0.69282	0.63882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	324970000	160990000	163970000	107350000	26904000	80443000	127210000	81163000	46050000	90406000	52925000	37481000	0	0	0	23310	1483	22077	145776;145777;145778;145779	197028;197029;197030	197028			3	
IAGYVTHLMK	1	Oxidation (M)	1147.606	0.6059652	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.11	6.44			10					1	8	6	4	5	4	34.032	28.85	2;3	9.0544E-05	24411	160511_QHF_FH_JSI11i_3	91.069	79.221			0.91119	0.88768	19.511	17	1	Median	1.2659	1.0693	10.415	5	0	Median	0.93064	1.094	30.122	4	1	Median	0.90874	0.87398	1.1393	4	0	Median	0.69501	0.72722	15.307	4	0	Median	8318300000	3572800000	4745600000	1714900000	477960000	1236900000	1368700000	486060000	882690000	1764400000	850330000	914090000	3470300000	1758400000	1711900000	23311	914	22078	145780;145781;145782;145783;145784;145785;145786;145787;145788;145789;145790;145791;145792;145793;145794;145795;145796;145797;145798	197031;197032;197033;197034;197035;197036;197037;197038;197039;197040;197041;197042;197043;197044;197045;197046;197047;197048;197049;197050;197051;197052;197053;197054;197055;197056	197033		491	26	
IAGYVTHLMK	1	Unmodified	1131.6111	0.61105057	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.16		8	16					1	10	10	10	10	5	45.037	41.736	2;3	3.8779E-07	22214	160513_QHF_FH_JSI9Kac_6	109.11	83.973			1.0439	1.0484	141.29	34	32	Median	2.7266	2.3865	169.24	9	9	Median	1.7758	2.1148	105.9	10	10	Median	0.74541	0.76536	135.73	10	9	Median	0.93701	1.0066	189.51	5	4	Median	59919000000	27557000000	32363000000	12418000000	4732200000	7685700000	13503000000	5777800000	7725300000	14539000000	6783800000	7755100000	19459000000	10263000000	9196500000	23312	914	22078	145799;145800;145801;145802;145803;145804;145805;145806;145807;145808;145809;145810;145811;145812;145813;145814;145815;145816;145817;145818;145819;145820;145821;145822;145823;145824;145825;145826;145827;145828;145829;145830;145831;145832;145833	197057;197058;197059;197060;197061;197062;197063;197064;197065;197066;197067;197068;197069;197070;197071;197072;197073;197074;197075;197076;197077;197078;197079;197080;197081;197082;197083;197084;197085;197086;197087;197088;197089;197090;197091;197092;197093;197094;197095;197096;197097;197098;197099;197100;197101;197102;197103;197104;197105;197106;197107;197108;197109;197110;197111;197112	197099			56	
IAHFLDR	0	Unmodified	870.47119	0.47118627	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.02		3	6						1	2	4	3	1	26.472	24.957	2;3	0.0013109	20329	160511_QHF_FH_JSI9i_3	89.55	58.26			1.0233	0.92775	29.719	9	2	Median	1.0233	0.8261	NaN	1	0	Median	0.93096	1.1244	30.63	4	1	Median	1.2034	1.1295	29.066	3	1	Median	0.64322	0.66411	NaN	1	0	Median	3322400000	1581800000	1740600000	867320000	333710000	533610000	920450000	474460000	445990000	1219900000	607260000	612690000	314730000	166390000	148340000	23313	1909	22079	145834;145835;145836;145837;145838;145839;145840;145841;145842;145843	197113;197114;197115;197116;197117;197118;197119;197120;197121;197122;197123;197124;197125;197126	197119			14	
IAHIMGPPDR	0	Oxidation (M)	1121.5652	0.56516301	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	21.308	20.789	3	2.1117E-05	14664	160511_QHF_FH_JSI11i_3	88.056	81.168			1.0066	1.0852	27.217	7	1	Median	1.7583	1.4411	26.297	2	0	Median	0.92455	1.0852	NaN	1	0	Median	1.0828	1.0212	9.4068	2	1	Median	0.77891	0.78888	0.19007	2	0	Median	907040000	449790000	457250000	231390000	82096000	149300000	207590000	122630000	84965000	249180000	118800000	130380000	218870000	126270000	92603000	23314	3911	22080	145844;145845;145846;145847;145848;145849;145850	197127;197128;197129;197130;197131;197132;197133	197127		2342	7	
IAHIMGPPDR	0	Unmodified	1105.5702	0.57024839	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.84		2	9						4	4	5	4	2	28.264	25.21	2;3	3.0104E-06	20851	160511_QHF_FH_JSI10i_3	96.143	91.627			0.92777	1.0768	28.878	14	4	Median	1.5731	1.2699	36.721	3	1	Plateau	0.82449	0.98841	21.463	5	2	Median	1.0056	0.97094	38.224	4	1	Median	0.84423	0.88055	40.555	2	0	Median	4115000000	1983500000	2131500000	967040000	373730000	593310000	1239400000	629730000	609710000	1490200000	743840000	746360000	418350000	236240000	182110000	23315	3911	22080	145851;145852;145853;145854;145855;145856;145857;145858;145859;145860;145861;145862;145863;145864;145865	197134;197135;197136;197137;197138;197139;197140;197141;197142;197143;197144;197145;197146;197147;197148;197149;197150;197151	197138			18	
IAHIPLYFVNAQFPR	0	Unmodified	1784.9726	0.97261004	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.104	75.862	3	8.1926E-17	42927	160513_QHF_FH_JSI10Kac_6	135.6	130.17			0.99333	1.0168	6.8811	4	0	Median	1.3161	1.1013	NaN	1	0	Median	0.82508	0.98813	NaN	1	0	Median	1.0058	0.93981	NaN	1	0	Median	0.98101	1.0463	NaN	1	0	Median	993190000	497960000	495230000	196790000	80352000	116440000	441190000	246350000	194840000	187220000	92474000	94750000	167980000	78789000	89196000	23316	4956	22081	145866;145867;145868;145869	197152;197153;197154;197155;197156;197157	197157			6	
IAHLAGVK	1	Unmodified	807.49667	0.49667274	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		15.081	14.615	2	0.014896	11665	160511_QHF_FH_JSI11i_3	50.966	28.344			0.94986	0.97915	10.687	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92116	1.056	NaN	1	0	Median	0.97945	0.90789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	294520000	160960000	133560000	0	0	0	74323000	39815000	34508000	220190000	121140000	99050000	0	0	0	23317	1016	22082	145870;145871	197158;197159	197158			2	
IAHLAGVKDQLTK	2	Acetyl (K)	1434.8195	0.81946344	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	56.908	47.041	3	0.052922	24554	160513_QHF_FH_JSI12Kac_6	33.685	21.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3392400	0	3392400	0	0	0	0	0	0	0	0	0	3392400	0	3392400	23318	1016	22083	145872	197160	197160			1	
IAHLVQYFFYK	1	Unmodified	1427.7602	0.76015765	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	1	4	2	3	79.172	71.251	2;3	1.7244E-11	39518	160513_QHF_FH_JSI10Kac_6	143.01	87.48			0.71051	0.71716	89.649	8	8	Median	0.53308	0.45188	NaN	1	1	Median	1.1357	1.3466	173.03	2	2	Median	1.0114	0.97738	45.684	2	2	Median	0.67981	0.72688	90.075	3	3	Median	502180000	249550000	252640000	41824000	29765000	12059000	281140000	135580000	145560000	99702000	44696000	55006000	79521000	39506000	40015000	23319	3585	22084	145873;145874;145875;145876;145877;145878;145879;145880;145881;145882	197161;197162;197163;197164;197165;197166;197167;197168;197169;197170	197170			10	
IAICGAISTYNR	0	Unmodified	1337.6762	0.67617003	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	2	1	56.892	52.066	2	1.0868E-05	28118	160513_QHF_FH_JSI11Kac_6	101.97	76.837			0.88622	1.0073	13.819	6	0	Median	1.2162	1.0643	NaN	1	0	Median	0.86678	1.0136	8.675	2	0	Median	0.85467	0.82924	4.1239	2	0	Median	1.107	1.1352	NaN	1	0	Median	473280000	262480000	210800000	13062000	5339200	7723000	83154000	44475000	38678000	196560000	115550000	81004000	180510000	97113000	83395000	23320	2581	22085	145883;145884;145885;145886;145887;145888	197171;197172;197173;197174;197175;197176	197173			6	
IAIDHNQMFQYFITVVPTK	1	Unmodified	2264.1664	0.16636041	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	1	2	3	92.595	85.163	3	1.0254E-08	47988	160513_QHF_FH_JSI10Kac_6	104.35	95.96			1.0909	1.0346	14.295	7	5	Median	1.0909	0.94694	NaN	1	0	Median	0.72263	0.86846	NaN	1	0	Median	1.1477	1.0831	6.479	2	2	Median	0.92167	0.96739	17.484	3	3	Plateau	1439000000	739620000	699340000	282250000	136290000	145960000	301770000	181940000	119830000	312520000	142560000	169960000	542410000	278820000	263590000	23321	4222	22086	145889;145890;145891;145892;145893;145894;145895	197177;197178;197179;197180;197181;197182;197183;197184	197184			8	
IAIGPLR	0	Unmodified	738.47521	0.47520902	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			41.465	39.945	2	0.060549	33263	160511_QHF_FH_JSI10i_3	45.75	3.0314			0.45418	0.53252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45418	0.53252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9496300	5707700	3788600	0	0	0	9496300	5707700	3788600	0	0	0	0	0	0	23322	4205	22087	145896	197185	197185			1	
IAIIGAGIGGTSAAYYLR	0	Unmodified	1765.9727	0.97266962	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.62		3	6						7	4	4	5	3	87.277	83.285	2;3	1.3839E-83	41694	160513_QHF_FH_JSI9Kac_6	225.13	179.15			0.96511	1.0175	14.817	15	2	Median	1.2644	1.0612	10.342	4	0	Median	0.89914	1.0599	12.957	3	0	Plateau	1.0323	0.98827	19.788	5	1	Median	0.83794	0.89675	14.501	3	1	Median	1046000000	517650000	528390000	245770000	111790000	133980000	386000000	193570000	192440000	267350000	134020000	133330000	146910000	78270000	68643000	23323	5300	22088	145897;145898;145899;145900;145901;145902;145903;145904;145905;145906;145907;145908;145909;145910;145911;145912	197186;197187;197188;197189;197190;197191;197192;197193;197194;197195;197196;197197;197198;197199;197200;197201;197202;197203;197204;197205;197206;197207;197208	197199			21	
IAIIVDDIIDDVDSFLAAAETLK	1	Unmodified	2459.3047	0.30468761	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			105.85	100.13	3	1.2614E-19	59350	160513_QHF_FH_JSI10Kac_6	180.86	159.46			0.63289	0.73847	142.64	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63289	0.73847	142.64	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	249730000	174220000	75510000	0	0	0	249730000	174220000	75510000	0	0	0	0	0	0	23324	402	22089	145913;145914	197209;197210	197210			2	
IAIIVDDIIDDVESFVAAAEILK	1	Unmodified	2471.3411	0.34107311	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			106.3	100.58	3	2.7959E-19	59605	160513_QHF_FH_JSI10Kac_6	135.21	114.01			0.59874	0.69327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59874	0.69327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81707000	64490000	17217000	0	0	0	81707000	64490000	17217000	0	0	0	0	0	0	23325	2543	22090	145915;145916	197211;197212	197212			2	
IAILGFAFK	1	Unmodified	978.59024	0.59023878	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	95.719	92.863	2	9.4063E-05	85217	160511_QHF_FH_JSI12i_3	94.262	44.222			0.98288	1.0003	12.191	12	0	Median	1.1835	1.0104	13.689	3	0	Plateau	0.96733	1.0158	7.9393	3	0	Plateau	1.1065	1.0419	3.2291	3	0	Plateau	1.018	1.0566	19.121	3	0	Plateau	6722400000	3280200000	3442200000	1915300000	841810000	1073500000	1490800000	793940000	696820000	2483500000	1186600000	1296900000	832810000	457860000	374950000	23326	440	22091	145917;145918;145919;145920;145921;145922;145923;145924;145925;145926;145927;145928	197213;197214;197215;197216;197217;197218;197219;197220;197221;197222;197223;197224;197225;197226;197227;197228;197229;197230;197231	197227			19	
IAILGFAFKK	2	Unmodified	1106.6852	0.68520179	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	3	3	4	3	79.968	74.932	2;3	1.7198E-05	39311	160513_QHF_FH_JSI11Kac_6	89.247	55.503			1.2116	1.2572	66.691	9	9	Median	1.7284	1.437	47.321	2	2	Median	1.6371	1.9128	87.569	2	2	Median	0.90377	0.85098	85.33	3	3	Plateau	2.2252	2.3222	86.779	2	2	Median	2278400000	770760000	1507600000	550820000	172200000	378620000	703960000	281340000	422620000	603020000	210790000	392240000	420570000	106430000	314140000	23327	440	22092	145929;145930;145931;145932;145933;145934;145935;145936;145937;145938;145939;145940;145941	197232;197233;197234;197235;197236;197237;197238;197239;197240;197241;197242;197243;197244;197245;197246;197247	197237			16	
IAILGYR	0	Unmodified	804.48577	0.48577371	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	55.646	51.409	2	0.0023732	27790	160513_QHF_FH_JSI11Kac_6	103.41	38.846			0.89166	0.93159	17.259	13	1	Median	1.1031	0.96102	14.111	4	0	Median	0.84988	0.98855	7.0717	3	0	Median	0.97085	0.93159	9.641	3	0	Median	0.79847	0.81214	24.027	3	1	Median	1996100000	993400000	1002800000	462750000	194920000	267830000	554150000	288960000	265190000	514620000	255320000	259300000	464630000	254200000	210430000	23328	2660	22093	145942;145943;145944;145945;145946;145947;145948;145949;145950;145951;145952;145953;145954	197248;197249;197250;197251;197252;197253;197254;197255;197256;197257;197258;197259;197260;197261;197262;197263;197264;197265;197266	197252			19	
IAILTCPFEPPKPK	2	Unmodified	1609.8902	0.89018555	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.64	1	3	8							2	2	5	3	69.887	69.345	2;3;4	6.1057E-10	61572	160511_QHF_FH_JSI11i_3	117.07	111.17			1.0382	1.1791	22.115	12	2	Median	1.5277	1.3029	11.159	2	0	Median	1.0178	1.2091	6.511	2	0	Median	0.97784	0.94918	15.183	5	1	Median	1.3578	1.3887	37.04	3	1	Median	3083800000	1448200000	1635600000	205840000	93119000	112730000	535500000	266270000	269230000	1091300000	536090000	555210000	1251100000	552690000	698440000	23329	1630	22094	145955;145956;145957;145958;145959;145960;145961;145962;145963;145964;145965;145966	197267;197268;197269;197270;197271;197272;197273;197274;197275;197276;197277;197278;197279;197280;197281;197282;197283;197284;197285;197286;197287;197288;197289;197290;197291;197292;197293;197294;197295;197296;197297;197298	197270			32	
IAIPDASK	1	Unmodified	813.45962	0.45961853	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.845	33.241	2	0.0042745	29230	160511_QHF_FH_JSI9i_1	69.198	50.392			1.0891	1.0275	8.2686	4	0	Median	1.1952	0.98832	NaN	1	0	Median	0.78815	0.92164	NaN	1	0	Median	1.1404	1.1097	NaN	1	0	Median	1.04	1.0682	NaN	1	0	Median	554010000	272590000	281410000	153000000	63365000	89631000	156620000	81396000	75228000	143310000	80535000	62770000	101080000	47297000	53783000	23330	586	22095	145967;145968;145969;145970	197299;197300;197301;197302;197303	197303			5	
IAIPGLAGAGNSVLLVSNLNPER	0	Unmodified	2274.2696	0.26957993	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.22	2	3	7						5	4	5	5	3	99.165	96.583	2;3	1.2866E-87	83967	160511_QHF_FH_JSI10i_3	247.89	239.08			1.0099	1.0574	20.055	17	1	Median	1.4954	1.2294	17.385	4	0	Median	0.88992	1.0729	9.2441	5	0	Median	1.0458	1.0052	18.655	5	1	Median	0.9744	0.97178	29.319	3	0	Median	10904000000	5354400000	5549500000	3119100000	1377700000	1741400000	4307800000	2232600000	2075200000	2307200000	1139700000	1167600000	1169800000	604540000	565270000	23331	1281	22096	145971;145972;145973;145974;145975;145976;145977;145978;145979;145980;145981;145982;145983;145984;145985;145986;145987	197304;197305;197306;197307;197308;197309;197310;197311;197312;197313;197314;197315;197316;197317;197318;197319;197320;197321	197306			17	
IAIVNHDK	1	Unmodified	908.50797	0.50796571	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	13.434	13.104	2;3	0.001672	9968	160511_QHF_FH_JSI12i_3	55.549	38.878			1.3108	1.2115	21.295	11	0	Median	1.5156	1.3177	1.1561	2	0	Median	0.7763	0.94446	2.0565	2	0	Median	1.116	1.0931	21.559	4	0	Median	1.4774	1.5429	17.218	3	0	Median	1761800000	880900000	880950000	138020000	58546000	79470000	165690000	91162000	74530000	636460000	307370000	329090000	821680000	423830000	397850000	23332	1945	22097	145988;145989;145990;145991;145992;145993;145994;145995;145996;145997;145998	197322;197323;197324;197325;197326;197327;197328;197329	197329			8	
IAIWTTECENR	0	Unmodified	1391.6503	0.65034921	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	51.676	50.83	2	2.2779E-05	43829	160511_QHF_FH_JSI11i_2	134.25	121.72			0.88543	0.97531	15.596	4	4	Median	NaN	NaN	NaN	0	0	Median	0.75892	0.91402	NaN	1	1	Median	0.90234	0.91043	18.912	2	2	Median	0.99413	1.139	NaN	1	1	Median	360720000	176320000	184400000	0	0	0	73892000	41189000	32703000	221220000	104320000	116900000	65607000	30812000	34796000	23333	853	22098	145999;146000;146001;146002;146003	197330;197331;197332;197333;197334	197333			5	
IAIYELLFK	1	Unmodified	1108.6532	0.65323296	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.5	1	4	3						4	3	2	4	3	98.733	95.892	2	3.1458E-08	89297	160511_QHF_FH_JSI9i_2	148.38	131			1.031	1.0638	16.517	12	0	Median	1.2379	1.0592	9.9933	3	0	Median	1.0195	1.154	8.4923	2	0	Median	1.0016	1.0156	23.235	4	0	Median	0.99305	1.0684	18.208	3	0	Median	50569000000	23629000000	26940000000	8929400000	3876000000	5053500000	9487700000	4803200000	4684500000	17300000000	7821300000	9478500000	14852000000	7128900000	7723500000	23334	1595	22099	146004;146005;146006;146007;146008;146009;146010;146011;146012;146013;146014;146015	197335;197336;197337;197338;197339;197340;197341;197342;197343;197344;197345;197346;197347;197348;197349;197350;197351;197352;197353;197354;197355	197343			21	
IAKAVNEK	2	Acetyl (K)	913.52328	0.52328142	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		21.807	14.358	2	0.030477	9471	160513_QHF_FH_JSI11Kac_3	56.729	25.656			0.46369	0.4943	60.987	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6475	0.76081	NaN	1	0	Median	0.33206	0.32115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15523000	10825000	4698000	0	0	0	4966500	3043300	1923200	10557000	7782100	2774800	0	0	0	23335	854	22100	146016;146017	197356	197356	522		1	
IAKMHEVK	2	Acetyl (K)	996.54264	0.54263666	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		23.038	13.924	3	0.021577	8994	160513_QHF_FH_JSI11Kac_6	36.334	20.452			0.46037	0.44933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46037	0.44933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5835700	4211400	1624300	0	0	0	0	0	0	5835700	4211400	1624300	0	0	0	23336	4221	22101	146018	197357	197357	3082		1	
IAKTHEDIEAQIR	1	Acetyl (K)	1564.8209	0.82092001	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.271	36.841	3	0.042873	20710	160513_QHF_FH_JSI11Kac_5	37.013	22.326			0.22537	0.22466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22537	0.22466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3778700	2797200	981540	0	0	0	0	0	0	3778700	2797200	981540	0	0	0	23337	542	22102	146019	197358	197358			0	
IAKYPHVEDYRR	1	Acetyl (K)	1587.8158	0.81577505	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		42.162	32.565	4	0.0039268	17933	160513_QHF_FH_JSI11Kac_6	54.65	40.971			0.12158	0.11809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12158	0.11809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14304000	13880000	423430	0	0	0	0	0	0	14304000	13880000	423430	0	0	0	23338	1950	22103	146020	197359	197359	1963		1	
IALALTAISLGTARPPPSMSAAGLAAR	0	Unmodified	2576.4472	0.44722671	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.296	81.578	3	6.3636E-08	45978	160513_QHF_FH_JSI10Kac_6	96.903	68.09			1.1523	1.3524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1523	1.3524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62035000	24370000	37664000	0	0	0	62035000	24370000	37664000	0	0	0	0	0	0	23339	5474	22104	146021	197360	197360			1	
IALDFQR	0	Unmodified	861.47085	0.47085192	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	2	1	1	49.475	48.376	2	0.0099713	41714	160511_QHF_FH_JSI11i_2	76.847	37.628			0.99047	1.0158	20.301	5	0	Median	1.2125	1.0343	NaN	1	0	Median	1.0181	1.2407	33.317	2	0	Median	0.99047	1.0158	NaN	1	0	Median	0.88489	0.97386	NaN	1	0	Median	4394200000	2271300000	2122900000	917820000	414810000	503010000	1090100000	613760000	476300000	1306600000	634500000	672100000	1079700000	608190000	471520000	23340	1130	22105	146022;146023;146024;146025;146026	197361;197362;197363	197362			3	
IALEDVPEK	1	Unmodified	1012.5441	0.54407645	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	43.158	42.235	2	0.01177	37484	160511_QHF_FH_JSI9i_1	48.423	36.655			0.87404	0.8075	35.28	2	0	Median	0.75807	0.62922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0078	1.0363	NaN	1	0	Median	153700000	83383000	70318000	57426000	30976000	26450000	0	0	0	0	0	0	96275000	52407000	43868000	23341	301	22106	146027;146028	197364;197365	197365			2	
IALEHPMLTDIHDK	1	Unmodified	1631.8341	0.83412723	5392	Q9UL63	MKLN1	Muskelin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		50.609	50.609	4	0.0093178	44800	160511_QHF_FH_JSI11i_3	38.376	26.21			2.2086	2.0966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2086	2.0966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26841000	11013000	15828000	0	0	0	0	0	0	26841000	11013000	15828000	0	0	0	23342	5392	22107	146029	197366	197366			1	
IALGIPLPEIK	1	Unmodified	1162.7325	0.73254592	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.703	4	7	3							3	4	4	3	96.484	96.279	2;3	1.6707E-05	82841	160511_QHF_FH_JSI12i_2	125.82	104.52			1.0401	1.0325	15.306	13	1	Median	1.254	1.0719	7.2312	3	1	Median	0.76471	1.0358	25.391	4	0	Linear	1.0401	1.0751	4.6743	3	0	Plateau	0.97583	1.0863	8.5776	3	0	Plateau	2770200000	1364400000	1405700000	470990000	204100000	266890000	784820000	411640000	373180000	836450000	414250000	422200000	677890000	334450000	343450000	23343	1372	22108	146030;146031;146032;146033;146034;146035;146036;146037;146038;146039;146040;146041;146042;146043	197367;197368;197369;197370;197371;197372;197373;197374;197375;197376;197377;197378;197379;197380;197381;197382;197383;197384;197385;197386;197387;197388;197389;197390;197391;197392;197393	197371			27	
IALHTALNNPYYYLK	1	Unmodified	1792.9512	0.9512059	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			74.999	73.552	3	0.00093197	61724	160511_QHF_FH_JSI10i_3	44.571	33.627			1.1569	1.1782	13.148	3	2	Median	1.3124	1.0688	16.806	2	2	Median	1.0265	1.1782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117780000	51038000	66742000	84163000	33376000	50787000	33617000	17662000	15955000	0	0	0	0	0	0	23344	5232	22109	146044;146045;146046	197394;197395;197396	197394			3	
IALLEEAK	1	Unmodified	885.51713	0.51713341	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.66		1					2				1	1	1	53.004	45.353	2	0.0027493	38739	160511_QHF_FH_JSI12i_2	85.212	58.61			0.85412	1.2186	18.932	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1455	1.3877	NaN	1	0	Median	1.2322	1.2186	NaN	1	0	Median	0.85412	0.95567	NaN	1	1	Median	450610000	265570000	185040000	0	0	0	8999600	4504600	4495000	8879500	4037500	4842000	432740000	257030000	175700000	23345	1426	22110	146047;146048;146049	197397;197398;197399	197397			3	
IALLEEAKK	2	Unmodified	1013.6121	0.61209643	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	2	2	36.077	35.473	3	0.013749	30053	160511_QHF_FH_JSI12i_3	41.54	17.248			1.48	1.6424	94.928	7	7	Median	1.708	1.4548	100.04	2	2	Median	1.48	1.6424	NaN	1	1	Median	1.7389	1.6192	110.81	2	2	Median	1.4409	1.4515	177.65	2	2	Median	587460000	240830000	346630000	94752000	39677000	55075000	20452000	8166400	12286000	198390000	83230000	115160000	273860000	109760000	164100000	23346	1426	22111	146050;146051;146052;146053;146054;146055;146056	197400;197401;197402;197403;197404;197405;197406	197406			7	
IALLEEARR	0	Unmodified	1069.6244	0.62439245	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		6	5.79		2	4						2	3	4	1		39.556	35.959	2;3	1.9784E-05	29204	160511_QHF_FH_JSI9i_3	95.358	78.191			1.0496	1.0359	11.001	7	0	Median	1.3186	1.0359	12.149	3	0	Median	0.83951	0.9832	14.67	3	0	Median	1.0496	1.0369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1133600000	501140000	632460000	793130000	331030000	462100000	336710000	167690000	169010000	3763000	2408400	1354600	0	0	0	23347	1073	22112	146057;146058;146059;146060;146061;146062;146063;146064	197407;197408;197409;197410;197411;197412;197413;197414;197415;197416;197417;197418	197412			12	
IALLEPLLGYMQAQISFFK	1	Unmodified	2181.1908	0.19078424	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		101.25	93.738	2;3	1.1048E-44	53242	160513_QHF_FH_JSI9Kac_6	177.67	165			1.0511	1.102	19.911	4	0	Median	1.6043	1.3563	NaN	1	0	Median	0.80618	0.93875	0.36714	2	0	Median	1.3575	1.2903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	783200000	393340000	389850000	220610000	73403000	147200000	481460000	285090000	196370000	81129000	34854000	46275000	0	0	0	23348	5367	22113	146065;146066;146067;146068	197419;197420;197421;197422;197423;197424	197420			6	
IALLNVELELK	1	Unmodified	1253.7595	0.75948895	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	1	1	3	2	93.478	90.158	2	6.6129E-06	82375	160511_QHF_FH_JSI12i_2	110.14	91.356			0.87938	0.97348	13.133	6	1	Median	1.1138	0.97409	NaN	1	0	Median	0.79607	0.97287	NaN	1	0	Median	0.88451	0.87547	15.833	2	0	Median	0.83308	0.90194	22.179	2	1	Median	218680000	123390000	95283000	18746000	10438000	8307500	22768000	12037000	10730000	94714000	55769000	38945000	82450000	45150000	37300000	23349	4321	22114	146069;146070;146071;146072;146073;146074;146075	197425;197426;197427;197428;197429;197430;197431;197432;197433;197434	197425			10	
IALLPLLQAETDRR	0	Unmodified	1607.9359	0.93589019	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			88.883	87.742	3	0.00042709	73330	160511_QHF_FH_JSI10i_3	55.314	50.684			0.86747	0.84858	2.8403	2	0	Median	1.0142	0.83171	NaN	1	0	Median	0.74198	0.8658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38044000	21793000	16251000	19930000	10425000	9505700	18114000	11368000	6745200	0	0	0	0	0	0	23350	5180	22115	146076;146077	197435;197436;197437	197435			3	
IALPAPR	0	Unmodified	736.45956	0.45955895	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.514	2	8	1							2	4	2	3	38.691	37.794	2	0.0093014	32284	160511_QHF_FH_JSI12i_2	69.39	22.344			1.0312	1.1044	29.286	7	5	Median	1.2979	1.1077	NaN	1	1	Median	0.90919	1.1044	9.6238	3	2	Median	2.2874	2.3161	NaN	1	1	Median	1.0034	1.0513	0.2254	2	1	Median	748660000	216380000	532270000	85362000	39441000	45921000	195940000	77145000	118800000	379170000	55387000	323790000	88180000	44411000	43769000	23351	3290	22116	146078;146079;146080;146081;146082;146083;146084;146085;146086;146087;146088	197438;197439;197440;197441;197442;197443;197444;197445;197446;197447;197448	197439			11	
IALTDNALIAR	0	Unmodified	1169.6768	0.67682195	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.11	1	3	4				2	4		5	2	3	4	65.751	61.051	2	1.6838E-07	52416	160511_QHF_FH_JSI12i_2	123.35	73.937			1.0856	1.0596	18.54	13	0	Median	1.3456	1.1086	22.74	4	0	Median	0.78131	0.91703	0.26515	2	0	Median	1.0299	1.0025	16.076	3	0	Median	1.0439	1.0946	13.114	4	0	Median	7721100000	3792100000	3929000000	2636700000	1126700000	1510000000	1786700000	933920000	852790000	629490000	318050000	311440000	2668200000	1413400000	1254800000	23352	1138	22117	146089;146090;146091;146092;146093;146094;146095;146096;146097;146098;146099;146100;146101;146102	197449;197450;197451;197452;197453;197454;197455;197456;197457;197458;197459;197460;197461;197462;197463;197464;197465;197466	197451			18	
IALTGGAALVADYGHDGTK	1	Unmodified	1828.9319	0.93192702	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.63	64.339	3	0.010175	55568	160511_QHF_FH_JSI12i_3	35.159	35.159			1.3746	1.3749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3746	1.3749	NaN	1	0	Median	159030000	62443000	96586000	0	0	0	0	0	0	0	0	0	159030000	62443000	96586000	23353	3230	22118	146103	197467	197467			1	
IALVDQHGR	0	Unmodified	1007.5512	0.55122751	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				19.41	18.515	3	0.0047294	15728	160511_QHF_FH_JSI9i_2	42.348	31.279			1.1683	1.0564	NaN	1	0	Median	1.1683	1.0564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47241000	25614000	21628000	47241000	25614000	21628000	0	0	0	0	0	0	0	0	0	23354	2834	22119	146104	197468	197468			1	
IALYCHQLNICSK	1	Unmodified	1618.796	0.79596759	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	60.191	52.735	2;3	9.8717E-05	29054	160513_QHF_FH_JSI10Kac_6	83.729	75.552			1.1699	1.1537	28.223	5	2	Median	1.0593	0.91133	NaN	1	0	Median	0.9264	1.0863	NaN	1	0	Median	1.1743	1.1537	NaN	1	1	Median	1.4761	1.5644	30.578	2	1	Median	182440000	80836000	101610000	27349000	14625000	12724000	79794000	37784000	42010000	43382000	18532000	24850000	31920000	9894100	22026000	23355	1421;1272	22120	146105;146106;146107;146108;146109	197469;197470;197471;197472;197473	197472			5	
IALYETPTGWK	1	Unmodified	1277.6656	0.66558856	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.3	1	5	4					2	3	4	2	5	4	68.459	64.374	2	4.4329E-06	59181	160511_QHF_FH_JSI12i_1	116.05	96.78			0.7331	0.75407	37.501	14	14	Median	0.79222	0.65866	41.706	3	3	Plateau	0.74434	0.90687	5.8954	2	2	Median	0.82618	0.85167	39.809	5	5	Median	0.71234	0.75407	21.095	4	4	Median	5829800000	3459600000	2370300000	774880000	413480000	361390000	1077200000	687530000	389660000	2761400000	1566700000	1194700000	1216400000	791890000	424470000	23356	1460	22121	146110;146111;146112;146113;146114;146115;146116;146117;146118;146119;146120;146121;146122;146123;146124	197474;197475;197476;197477;197478;197479;197480;197481;197482;197483;197484;197485;197486;197487;197488;197489;197490;197491	197478			18	
IALYGLGSIPDER	0	Unmodified	1402.7456	0.7456298	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	77.959	77.348	2	0.00015264	67982	160511_QHF_FH_JSI11i_2	134.57	116.7			0.8605	0.93435	4.6111	5	2	Median	NaN	NaN	NaN	0	0	Median	0.78065	0.91197	8.6424	2	1	Median	0.93528	0.93018	2.1907	2	1	Median	0.85521	0.93435	NaN	1	0	Median	268650000	134060000	134580000	0	0	0	84686000	47275000	37411000	122910000	58640000	64271000	61053000	28150000	32903000	23357	1695	22122	146125;146126;146127;146128;146129;146130	197492;197493;197494;197495;197496;197497;197498;197499	197497			8	
IAMENDDGRTEEEK	1	Unmodified	1635.7046	0.7046292	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	1	0	6									1	2	1	2	15.76	15.336	2;3	3.1147E-06	12998	160511_QHF_FH_JSI12i_1	89.189	63.752			1.0291	1.0157	31.988	5	1	Median	1.2601	1.0157	NaN	1	0	Median	1.1826	1.3636	52.291	2	1	Median	0.9114	0.89952	NaN	1	0	Median	1.0291	1.0829	NaN	1	0	Median	804550000	347170000	457380000	176520000	72056000	104470000	247290000	112250000	135040000	177560000	87841000	89714000	203180000	75024000	128160000	23358	3801	22123	146131;146132;146133;146134;146135;146136	197500;197501;197502	197501			3	
IAMLEPLTVDLNPQYYLLVNR	0	Unmodified	2474.3243	0.32431761	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.26	102.15	3	4.2645E-07	89943	160511_QHF_FH_JSI11i_2	99.021	92.069			1.0883	1.1062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0883	1.1062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126810000	54990000	71817000	0	0	0	0	0	0	126810000	54990000	71817000	0	0	0	23359	4047	22124	146137	197503	197503			1	
IANAIMK	1	Unmodified	759.4313	0.43129529	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2.67	0.471		1	2							1	1	1		23.069	22.113	2	0.042042	17846	160511_QHF_FH_JSI9i_3	46.37	29.444			0.39795	0.40309	4.8587	3	1	Median	0.45445	0.37797	NaN	1	0	Median	0.35193	0.40309	NaN	1	0	Median	0.39795	0.41574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	923780000	499540000	424240000	104470000	60738000	43733000	73589000	49014000	24576000	745720000	389790000	355930000	0	0	0	23360	887	22125	146138;146139;146140	197504;197505	197504			2	
IANDNSLNHEYLPILGLAEFR	0	Unmodified	2398.2281	0.22810904	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.67	5.09		3	2						1	2		2	2	99.543	98.029	3	3.1489E-46	90232	160511_QHF_FH_JSI11i_3	200.23	188.28			1.2012	1.0922	26.967	6	1	Median	1.7766	1.5014	46.113	2	1	Median	NaN	NaN	NaN	0	0	Median	1.138	1.1105	13.097	2	0	Median	1.0224	1.0809	2.5667	2	0	Median	3119400000	1461600000	1657800000	428590000	176960000	251630000	0	0	0	1348000000	641080000	706930000	1342800000	643530000	699240000	23361	1111	22126	146141;146142;146143;146144;146145;146146	197506;197507;197508;197509	197506			4	
IANFVEHK	1	Unmodified	956.50797	0.50796571	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	23.005	18.812	3	0.00084375	15152	160511_QHF_FH_JSI12i_3	65.305	33.371			1.0836	1.0119	59.878	2	1	Median	0.7627	0.6626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5395	1.5453	NaN	1	0	Median	231280000	84114000	147160000	2550400	1095900	1454600	0	0	0	0	0	0	228730000	83018000	145710000	23362	5755	22127	146147;146148	197510;197511;197512	197511			3	
IANFVEHKAAK	2	Acetyl (K)	1268.6877	0.68772099	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		39.251	30.178	3	0.0012643	16704	160513_QHF_FH_JSI11Kac_6	61.375	46.276			0.80012	0.85392	75.403	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2142	1.4554	NaN	1	0	Median	0.52726	0.50102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18955000	10406000	8548700	0	0	0	9194700	3776300	5418500	9760400	6630200	3130200	0	0	0	23363	5755	22128	146149;146150	197513;197514	197513	3550		2	
IANLAYVTK	1	Unmodified	991.57023	0.57023162	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.776	41.808	2	0.0071415	36922	160511_QHF_FH_JSI10i_2	53.751	37.211			0.96128	1.0263	15.523	4	0	Median	1.1717	0.98527	NaN	1	0	Median	0.96018	1.193	NaN	1	0	Median	0.82861	0.82543	NaN	1	0	Median	0.96237	1.0691	NaN	1	0	Median	373870000	183870000	190010000	61621000	23604000	38017000	68611000	34279000	34331000	154480000	86512000	67965000	89163000	39471000	49692000	23364	4856	22129	146151;146152;146153;146154	197515;197516;197517;197518;197519;197520	197520			6	
IANLQTDLSDGLR	0	Unmodified	1414.7416	0.74160705	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	2	2	1	63.874	61.425	2	4.1548E-07	54431	160511_QHF_FH_JSI10i_2	135.66	110.81			0.84843	0.95468	25.769	6	0	Median	1.5068	1.311	NaN	1	0	Median	0.7048	0.83997	10.206	2	0	Median	1.0821	1.0837	41.935	2	0	Median	0.91256	1.0095	NaN	1	0	Median	563760000	260220000	303530000	123500000	48014000	75487000	78386000	45206000	33179000	260100000	119480000	140620000	101770000	47522000	54245000	23365	1192	22130	146155;146156;146157;146158;146159;146160	197521;197522;197523;197524;197525;197526;197527	197527			6	
IANPDQLLTQDVEK	1	Unmodified	1582.8203	0.82025131	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	65.778	65.168	2;3	1.8555E-21	58925	160511_QHF_FH_JSI10i_1	176.05	159.8			0.93344	0.97573	28.555	8	1	Median	1.2918	1.057	5.672	2	0	Median	0.5643	0.6596	52.858	2	1	Median	1.0734	1.0342	5.7126	2	0	Median	0.82386	0.87426	2.4246	2	0	Median	1543000000	828000000	714960000	300230000	135040000	165180000	504790000	320850000	183950000	387620000	173300000	214310000	350330000	198810000	151520000	23366	1304	22131	146161;146162;146163;146164;146165;146166;146167;146168	197528;197529;197530;197531;197532;197533;197534;197535;197536;197537;197538;197539;197540	197536			13	
IANPVEGSSGR	0	Unmodified	1085.5465	0.54653606	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.73	4	4	3			3	4			3	5	5	5	21.979	18.353	2	1.332E-07	12456	160513_QHF_FH_JSI11Kac_4	116.52	67.762			0.99152	1.0075	11.177	18	1	Median	1.1693	0.92517	6.7587	3	1	Median	0.77266	0.96367	11.829	5	0	Plateau	1.048	1.0418	11.226	5	0	Median	0.94361	1.0098	11.741	5	0	Median	7460200000	3758800000	3701400000	1619700000	752360000	867340000	1644500000	889670000	754850000	2213500000	1094600000	1118900000	1982500000	1022200000	960350000	23367	2656	22132	146169;146170;146171;146172;146173;146174;146175;146176;146177;146178;146179;146180;146181;146182;146183;146184;146185;146186	197541;197542;197543;197544;197545;197546;197547;197548;197549;197550;197551;197552;197553;197554;197555;197556;197557;197558;197559;197560;197561;197562;197563;197564;197565;197566;197567;197568;197569	197555			29	
IANPVEGSTDR	0	Unmodified	1157.5677	0.56766543	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.03	4	2				3	2			3	2	3	3	26.095	20.89	2	5.7279E-07	20126	160511_QHF_FH_JSI11i_1	113.62	89.467			0.98134	0.97119	7.0326	11	0	Median	1.1639	0.9589	9.5857	3	0	Median	0.84927	1.0267	7.8572	2	0	Median	0.98179	0.96088	6.382	3	0	Plateau	0.89268	0.95919	5.7335	3	0	Median	6349000000	3372800000	2976200000	1638900000	797290000	841630000	1189400000	664120000	525240000	2071200000	1121900000	949360000	1449500000	789540000	659990000	23368	2657	22133	146187;146188;146189;146190;146191;146192;146193;146194;146195;146196;146197	197570;197571;197572;197573;197574;197575;197576;197577;197578;197579;197580;197581;197582;197583;197584;197585;197586	197570			17	
IANRDAEK	1	Unmodified	915.47739	0.47739386	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.29	0.7	1	3	3							2	1	2	2	4.5989	4.2929	2;3	0.055982	2072	160511_QHF_FH_JSI10i_3	22.086	11.328			1.042	1.0178	52.833	7	0	Median	0.68159	0.57138	72.881	2	0	Median	0.56448	0.65728	NaN	1	0	Median	1.0142	1.0231	0.73227	2	0	Median	1.4103	1.4929	29.524	2	0	Median	1473400000	829830000	643600000	173670000	96402000	77273000	327150000	249250000	77896000	807610000	405070000	402540000	164990000	79103000	85890000	23369	1748	22134	146198;146199;146200;146201;146202;146203;146204	197587;197588	197587			2	
IANTYNLTEVDK	1	Unmodified	1379.6933	0.69325988	5221	Q9P2N7	KLHL13	Kelch-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	45.966	45.29	2	0.00025455	40249	160511_QHF_FH_JSI9i_1	77.062	60.431			0.7462	0.98735	20.016	4	0	Linear	1.6771	1.3506	NaN	1	0	Median	0.88418	1.0563	NaN	1	0	Median	0.94391	0.92286	NaN	1	0	Median	0.83846	0.85645	NaN	1	0	Median	193250000	92167000	101080000	40632000	12944000	27688000	54710000	29706000	25004000	40995000	21564000	19431000	56912000	27953000	28958000	23370	5221	22135	146205;146206;146207;146208	197589	197589			1	
IANVVINQSANDSK	1	Unmodified	1471.7631	0.76307078	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.609	33.269	2	0.00083106	29800	160511_QHF_FH_JSI11i_1	65.842	50.252			0.47323	0.537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47323	0.537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22335000	16533000	5802100	0	0	0	22335000	16533000	5802100	0	0	0	0	0	0	23371	232	22136	146209;146210	197590;197591	197590			2	
IAPAEAPDAK	1	Unmodified	981.51311	0.51311067	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		25.802	18.21	2	0.02426	11298	160513_QHF_FH_JSI11Kac_3	46.001	24.151			0.98228	1.0569	16.561	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7901	0.94007	NaN	1	0	Median	1.2212	1.1882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9472100	4491900	4980200	0	0	0	2757300	1439800	1317500	6714900	3052100	3662800	0	0	0	23372	132	22137	146211;146212	197592	197592			1	
IAPAFSSMSNK	1	Oxidation (M)	1167.5594	0.55940893	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	25.841	25.399	2	0.029357	21620	160511_QHF_FH_JSI11i_3	42.001	21.131			1.2568	1.27	27.143	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2568	1.4139	NaN	1	0	Median	0.92852	0.84523	NaN	1	0	Median	1.2656	1.27	NaN	1	0	Median	161350000	73430000	87917000	0	0	0	22941000	11948000	10993000	32376000	16578000	15798000	106030000	44904000	61126000	23373	328	22138	146213;146214;146215	197593	197593			1	
IAPAFSSMSNK	1	Unmodified	1151.5645	0.56449431	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.01	2	4	4					1	1	4	3	3	2	41.422	39.143	2	3.183E-07	33069	160511_QHF_FH_JSI12i_3	119.75	98.8			1.0265	0.91505	18.265	12	0	Median	1.0738	0.91505	8.4462	4	0	Median	0.78721	0.95703	21.131	3	0	Median	0.80779	0.79661	24.44	3	0	Median	0.92867	0.97533	30.712	2	0	Median	2907500000	1482600000	1424900000	373700000	187310000	186390000	508410000	301350000	207060000	1057800000	517540000	540220000	967630000	476380000	491250000	23374	328	22138	146216;146217;146218;146219;146220;146221;146222;146223;146224;146225;146226;146227	197594;197595;197596;197597;197598;197599;197600;197601;197602;197603;197604;197605;197606;197607;197608;197609;197610;197611;197612	197610			19	
IAPASQIDSAWIVYNKPK	2	Unmodified	2000.0731	0.073111949	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	69.88	69.582	3	5.5536E-07	60341	160511_QHF_FH_JSI12i_3	101.15	96.532			0.91414	0.94065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91414	0.94065	NaN	1	0	Median	99502000	43450000	56052000	0	0	0	0	0	0	0	0	0	99502000	43450000	56052000	23375	4653	22139	146228;146229	197613;197614;197615;197616	197616			4	
IAPAVVHIELFR	0	Unmodified	1363.7976	0.79760579	3878	Q92743	HTRA1	Serine protease HTRA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.915	76.141	3	3.5577E-05	66021	160511_QHF_FH_JSI12i_3	83.617	62.388			1.0021	0.97277	25.406	4	0	Median	1.0201	0.83622	NaN	1	0	Median	0.5983	0.67541	NaN	1	0	Median	1.2739	1.1407	NaN	1	0	Median	0.98453	1.1316	NaN	1	0	Median	166570000	81691000	84878000	23488000	11946000	11543000	23125000	15055000	8070100	48027000	18748000	29279000	71928000	35942000	35986000	23376	3878	22140	146230;146231;146232;146233	197617;197618;197619;197620	197620			4	
IAPDLTSQDK	1	Unmodified	1086.5557	0.55570376	2184	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.739	27.428	2	0.0021769	24296	160511_QHF_FH_JSI10i_1	74.376	42.021			0.52975	0.61705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52975	0.61705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50981000	31585000	19396000	0	0	0	50981000	31585000	19396000	0	0	0	0	0	0	23377	2184	22141	146234	197621	197621			1	
IAPDVLRK	1	Unmodified	910.56	0.56000128	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	3	2		27.535	26.491	2;3	0.00031024	21412	160511_QHF_FH_JSI9i_3	82.452	59.381			0.86012	0.80549	49.613	7	3	Median	1.1311	0.90331	31.108	3	1	Plateau	0.86012	1.0308	71.6	3	2	Median	0.77226	0.71704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1014200000	551770000	462450000	358370000	181100000	177280000	556890000	320910000	235990000	98961000	49770000	49191000	0	0	0	23378	107	22142	146235;146236;146237;146238;146239;146240;146241;146242	197622;197623;197624;197625;197626;197627;197628;197629;197630;197631;197632	197626			11	
IAPELYHK	1	Unmodified	969.52837	0.5283668	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	25.983	25.381	2;3	0.00034541	21410	160511_QHF_FH_JSI12i_2	80.438	53.184			0.91704	0.93132	36.961	12	2	Median	0.85295	0.7342	11.313	2	0	Median	0.91522	1.127	29.142	2	0	Median	0.89338	0.88198	23.368	4	1	Median	1.1815	1.2595	58.166	4	1	Median	2922300000	1554300000	1368000000	397650000	223690000	173960000	522160000	293490000	228670000	1108000000	569900000	538110000	894450000	467200000	427250000	23379	2614	22143	146243;146244;146245;146246;146247;146248;146249;146250;146251;146252;146253;146254;146255	197633;197634;197635;197636;197637;197638;197639;197640;197641;197642;197643;197644;197645;197646;197647;197648;197649	197637			17	
IAPELYHKMLVVGGIDR	1	Acetyl (K)	1952.0554	0.055353394	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.011	75.694	3	0.00043471	41915	160513_QHF_FH_JSI11Kac_6	109.89	85.604			0.10888	0.09998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10888	0.09998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58507000	55918000	2589200	0	0	0	0	0	0	58507000	55918000	2589200	0	0	0	23380	2614	22144	146256	197650	197650	2579		1	
IAPETAVK	1	Unmodified	827.47527	0.4752686	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	18.979	18.35	2	0.015799	15884	160511_QHF_FH_JSI12i_1	50.127	16.576			1.003	0.99495	7.0368	4	0	Median	1.2142	0.99093	NaN	1	0	Median	0.80956	0.99898	NaN	1	0	Median	0.95317	0.9223	NaN	1	0	Median	1.0555	1.095	NaN	1	0	Median	1514300000	687660000	826660000	381210000	192280000	188940000	70571000	41714000	28857000	525630000	220350000	305280000	536910000	233320000	303590000	23381	3071	22145	146257;146258;146259;146260	197651;197652;197653;197654	197652			4	
IAPLAEGALPYNLAELQR	0	Unmodified	1938.0575	0.057461885	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	95.562	95.24	2;3	1.5466E-05	82067	160511_QHF_FH_JSI12i_2	80.738	73.33			0.97582	1.1225	10.242	4	0	Median	1.3719	1.1841	NaN	1	0	Median	0.9708	1.1623	NaN	1	0	Median	0.96231	0.94469	NaN	1	0	Median	0.98087	1.0841	NaN	1	0	Median	67122000	28331000	38791000	19681000	5551800	14129000	15107000	6858900	8247600	11612000	4693500	6918600	20722000	11227000	9495400	23382	562	22146	146261;146262;146263;146264;146265	197655;197656;197657;197658;197659;197660;197661	197655			7	
IAPLEEGTLPFNLAEAQR	0	Unmodified	1968.0316	0.031641065	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	4	2	94.373	94.006	2;3	1.9961E-05	81055	160511_QHF_FH_JSI12i_2	78.234	73.476			0.85279	0.89692	49.429	11	7	Median	1.0188	0.89414	18.44	2	1	Median	0.80725	0.93911	44.71	3	1	Plateau	0.92209	0.91776	70.709	4	4	Median	0.87632	0.96807	10.796	2	1	Median	741250000	401020000	340230000	79611000	38950000	40661000	228050000	137830000	90218000	299500000	155360000	144140000	134090000	68884000	65209000	23383	5345	22147	146266;146267;146268;146269;146270;146271;146272;146273;146274;146275;146276	197662;197663;197664;197665;197666;197667;197668;197669;197670;197671;197672	197664			10	
IAPNTPQLADIVATGFSVCGR	0	Unmodified	2186.1154	0.11538747	2895	Q5JPE7	NOMO2	Nodal modulator 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.56	100.57	3	0.016594	87136	160511_QHF_FH_JSI12i_3	27.471	20.911			0.88361	0.8666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88361	0.8666	NaN	1	0	Median	43585000	16802000	26782000	0	0	0	0	0	0	0	0	0	43585000	16802000	26782000	23384	2895	22148	146277	197673	197673			1	
IAPPEAPVTGYMFGK	1	Unmodified	1576.796	0.79595081	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.683	8	10	3							6	6	4	5	78.125	77.417	2;3	4.123E-05	68850	160511_QHF_FH_JSI9i_1	78.814	75.342			0.97687	1.019	8.8361	21	4	Median	1.1806	0.99717	12.08	6	2	Median	0.8451	1.0252	8.1803	6	2	Median	0.99901	1.0238	8.5444	4	0	Median	0.96127	1.0735	6.8566	5	0	Median	4111200000	2026500000	2084800000	972460000	455620000	516840000	1164400000	613930000	550430000	1138200000	554610000	583570000	836240000	402320000	433920000	23385	939	22149	146278;146279;146280;146281;146282;146283;146284;146285;146286;146287;146288;146289;146290;146291;146292;146293;146294;146295;146296;146297;146298	197674;197675;197676;197677;197678;197679;197680;197681;197682;197683;197684;197685;197686;197687;197688;197689;197690;197691;197692;197693;197694;197695;197696;197697;197698;197699;197700;197701;197702;197703;197704;197705;197706;197707;197708;197709;197710;197711;197712;197713;197714;197715	197701			42	
IAPPETPDSK	1	Unmodified	1053.5342	0.53424004	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.9	2		3						4	3	2	2	2	55.78	50.566	2	0.00089079	22565	160511_QHF_FH_JSI12i_1	74.92	45.758			1.1514	1.1453	23.414	8	1	Median	1.067	0.9328	11.85	3	0	Plateau	1.1381	1.3471	20.369	2	0	Median	0.94672	0.90369	36.963	2	1	Median	0.89647	0.94907	NaN	1	0	Median	2469400000	1219300000	1250100000	685620000	299940000	385680000	843680000	405150000	438520000	893370000	490180000	403190000	46736000	24044000	22692000	23386	5153	22150	146299;146300;146301;146302;146303;146304;146305;146306;146307	197716;197717;197718;197719	197717			4	
IAPQYYDMSNFPQCEAK	1	Unmodified	2060.8972	0.89719777	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	64.599	64.005	2;3	3.6969E-05	58402	160511_QHF_FH_JSI12i_1	88.087	72.699			1.1739	1.139	24.137	6	0	Median	1.3518	1.0938	NaN	1	0	Median	1.1853	1.4037	NaN	1	0	Median	0.92641	0.88206	23.792	2	0	Median	1.2675	1.3106	14.12	2	0	Median	448870000	222190000	226680000	49169000	18319000	30850000	74000000	38068000	35932000	192200000	97860000	94343000	133500000	67944000	65552000	23387	300	22151	146308;146309;146310;146311;146312;146313;146314;146315;146316	197720;197721;197722;197723;197724;197725;197726;197727	197723			8	
IAPSFAVESIEDALK	1	Unmodified	1588.8348	0.83483874	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.68	3	8	4							3	4	4	4	101.33	101.23	2;3	8.3632E-10	91924	160511_QHF_FH_JSI11i_1	187.58	163.85			0.92828	1.0047	11.261	15	1	Median	1.0536	0.85583	16.01	3	0	Median	0.83192	1.0013	5.6219	4	0	Median	1.0549	1.0436	17.281	4	0	Median	0.9348	0.99937	2.0257	4	1	Median	11227000000	5592100000	5635000000	2272400000	1070600000	1201800000	2390800000	1251500000	1139300000	3356400000	1623400000	1733100000	3207500000	1646600000	1560900000	23388	1372	22152	146317;146318;146319;146320;146321;146322;146323;146324;146325;146326;146327;146328;146329;146330;146331	197728;197729;197730;197731;197732;197733;197734;197735;197736;197737;197738;197739;197740;197741;197742;197743;197744;197745;197746;197747;197748;197749;197750;197751;197752;197753;197754;197755	197731			27	
IAPSHTMIPPATYSVALLAPK	1	Unmodified	2177.1918	0.19184688	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	85.699	85.454	3	7.9647E-07	74146	160511_QHF_FH_JSI12i_3	79.511	62.826			1.1834	1.1459	11.672	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78228	0.9542	NaN	1	1	Median	1.1498	1.0792	NaN	1	0	Median	1.1968	1.205	NaN	1	0	Median	143920000	69635000	74282000	0	0	0	22841000	13000000	9841000	58608000	25837000	32771000	62469000	30798000	31671000	23389	3653	22153	146332;146333;146334	197756;197757;197758;197759;197760;197761	197760			6	
IAPVENDNSYDELK	1	Unmodified	1605.7522	0.75223132	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	46.659	45.981	2	0.00080335	41309	160511_QHF_FH_JSI10i_1	68.44	40.428			0.92418	1.0093	41.446	4	1	Median	2.433	2.0008	NaN	1	1	Median	1.0112	1.2018	NaN	1	0	Median	0.84468	0.82026	NaN	1	0	Median	0.79697	0.84764	NaN	1	0	Median	304720000	133730000	170990000	139460000	40439000	99025000	60995000	33144000	27851000	59372000	34744000	24628000	44885000	25402000	19482000	23390	2588	22154	146335;146336;146337;146338	197762;197763;197764	197763			3	
IAPVENDNSYDELKR	1	Unmodified	1761.8533	0.85334235	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		39.09	38.639	3	0.003673	33000	160511_QHF_FH_JSI11i_2	50.653	40.695			0.54247	0.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54247	0.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27240000	19173000	8066600	0	0	0	0	0	0	27240000	19173000	8066600	0	0	0	23391	2588	22155	146339	197765	197765			1	
IAPVFFR	0	Unmodified	848.49086	0.49085908	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				61.546	60.03	2	0.034946	49301	160511_QHF_FH_JSI9i_3	51.036	30.338			0.43882	0.36247	NaN	1	1	Median	0.43882	0.36247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99240000	67392000	31848000	99240000	67392000	31848000	0	0	0	0	0	0	0	0	0	23392	3075	22156	146340	197766	197766			1	
IAPVHIDSEAISALVK	1	Unmodified	1661.9352	0.93522148	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	3	3	82.267	81.644	2;3	6.214E-06	71906	160511_QHF_FH_JSI11i_2	106.38	99.338			1.0865	1.1166	33.079	8	3	Median	1.2633	1.0858	NaN	1	0	Median	0.84882	1.0184	NaN	1	0	Median	1.1144	1.0897	35.254	3	2	Median	1.0593	1.1809	42.997	3	1	Median	720450000	303540000	416910000	86351000	39670000	46681000	149520000	69845000	79672000	253590000	97918000	155670000	230990000	96102000	134890000	23393	2789	22157	146341;146342;146343;146344;146345;146346;146347;146348	197767;197768;197769;197770;197771;197772;197773;197774;197775;197776;197777;197778;197779	197774			13	
IAPVHIDTESISALIK	1	Unmodified	1705.9614	0.96143623	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	88.38	87.947	3	5.1009E-08	76303	160511_QHF_FH_JSI12i_3	137.19	103.99			0.96386	1.0215	28.422	6	1	Median	0.81796	0.70376	NaN	1	1	Median	0.75896	0.92169	NaN	1	0	Median	1.0747	1.0429	11.192	2	0	Median	1.2924	1.3435	30.511	2	0	Median	310230000	171860000	138370000	44274000	26870000	17404000	57825000	36946000	20879000	102950000	56167000	46785000	105180000	51878000	53301000	23394	4988	22158	146349;146350;146351;146352;146353;146354	197780;197781;197782;197783;197784;197785;197786;197787;197788	197787			9	
IAPVIGLK	1	Unmodified	809.53747	0.53747492	2085	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	52.053	51.078	2	0.037165	44919	160511_QHF_FH_JSI10i_2	40.103	8.8137			1.0107	1.0412	19.779	4	0	Median	1.0021	0.8336	NaN	1	0	Median	0.87093	1.0755	NaN	1	0	Median	1.0194	1.008	NaN	1	0	Median	1.2444	1.3465	NaN	1	0	Median	134710000	66144000	68564000	26437000	11909000	14527000	29234000	15415000	13819000	47693000	23638000	24054000	31344000	15181000	16163000	23395	2085	22159	146355;146356;146357;146358	197789	197789			1	
IAPYSVEIK	1	Unmodified	1018.5699	0.56989727	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	48.21	47.353	2	0.0004804	42535	160511_QHF_FH_JSI10i_1	79.906	52.382			0.94865	0.97772	4.2069	7	0	Median	1.1686	0.97658	5.5368	2	0	Median	0.78344	0.95992	2.5991	2	0	Median	0.95938	0.95827	6.511	2	0	Median	0.91192	1.015	NaN	1	0	Median	3482300000	1576400000	1905900000	746290000	325350000	420940000	1037500000	502530000	534940000	1168900000	482320000	686540000	529700000	266220000	263490000	23396	2094	22160	146359;146360;146361;146362;146363;146364;146365	197790;197791;197792;197793;197794;197795;197796;197797;197798;197799;197800;197801;197802;197803;197804	197794			15	
IAPYVAHNFSK	1	Unmodified	1245.6506	0.6506072	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	3	2	3	34.816	33.931	2;3	1.7368E-05	29414	160511_QHF_FH_JSI11i_3	78.692	69.005			0.92169	0.91515	54.228	10	4	Median	1.4905	1.193	81.845	3	2	Median	1.0544	1.1845	62.019	3	2	Median	0.97296	0.91515	25.914	2	0	Median	0.62747	0.6321	12.847	2	0	Median	3412800000	1875700000	1537100000	762440000	320100000	442340000	539510000	289140000	250370000	973420000	591690000	381730000	1137500000	674800000	462670000	23397	1002	22161	146366;146367;146368;146369;146370;146371;146372;146373;146374;146375;146376	197805;197806;197807;197808;197809;197810;197811;197812;197813;197814;197815;197816;197817;197818;197819;197820;197821;197822;197823	197805			19	
IAQATDRSDPLMDTLSSMNR	0	Unmodified	2221.0467	0.046715556	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				69.249	68.363	3	0.0088524	60255	160511_QHF_FH_JSI9i_2	37.552	21.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23398	3564	22162	146377	197824	197824			1	
IAQDLEMYGINYFEIK	1	Unmodified	1945.9496	0.94955092	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								3	3	2	2	99.952	99.847	2;3	5.57E-15	90313	160511_QHF_FH_JSI10i_1	157.75	141.86			0.91593	0.88984	8.8485	9	1	Median	1.0225	0.84525	7.2711	2	0	Median	0.71789	0.86087	6.7426	3	1	Median	0.97539	0.93917	10.842	2	0	Median	0.9466	0.98906	7.1585	2	0	Median	565420000	297670000	267750000	104880000	51754000	53127000	195650000	106510000	89142000	126130000	68528000	57600000	138760000	70881000	67881000	23399	1073	22163	146378;146379;146380;146381;146382;146383;146384;146385;146386;146387	197825;197826;197827;197828;197829;197830;197831;197832;197833;197834;197835;197836;197837;197838;197839;197840;197841;197842;197843;197844;197845;197846;197847;197848;197849;197850	197838			26	
IAQDLEMYGVNYFEIK	1	Unmodified	1931.9339	0.93390085	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.2	0.4	4	1								2	2	1		95.936	95.867	2	6.7962E-07	85504	160511_QHF_FH_JSI10i_1	128.22	98.978			0.67981	0.76964	19.352	3	1	Median	0.91182	0.76964	NaN	1	0	Median	0.58171	0.67175	25.012	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109900000	68062000	41833000	8863000	3419000	5444000	101030000	64643000	36389000	0	0	0	0	0	0	23400	1426	22164	146388;146389;146390;146391;146392	197851;197852;197853;197854;197855;197856	197852			6	
IAQDLEMYGVNYFSIK	1	Oxidation (M)	1905.9183	0.91825079	1270	P26038	MSN	Moesin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.91	5	5						1		3	2	4	2	85.424	83.83	2	8.7875E-11	74707	160511_QHF_FH_JSI11i_2	107.37	91.832			0.9479	0.96718	24.89	10	6	Median	0.9141	0.73771	33.151	3	3	Median	0.71107	0.85038	5.3934	2	2	Median	1.0729	1.0226	22.685	3	1	Median	0.99898	1.0799	9.9435	2	0	Median	235100000	114090000	121000000	54030000	23025000	31005000	61664000	34581000	27083000	61176000	27300000	33875000	58228000	29188000	29040000	23401	1270	22165	146393;146394;146395;146396;146397;146398;146399;146400;146401;146402;146403	197857;197858;197859;197860;197861;197862;197863;197864;197865;197866;197867;197868;197869;197870;197871;197872;197873;197874	197871		899	18	
IAQDLEMYGVNYFSIK	1	Unmodified	1889.9233	0.92333617	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	4.25	8	9	2						2	6	6	5	4	92.523	91.199	2;3	1.2632E-15	83969	160511_QHF_FH_JSI10i_1	134.44	128.41			1.0481	1.0354	29.608	20	9	Median	1.2574	1.0602	46.47	6	3	Median	0.7698	0.90509	25.1	6	4	Median	1.0874	1.0857	3.6493	4	1	Median	0.94123	1.0213	24.958	4	1	Median	2141700000	1083400000	1058300000	390820000	164890000	225930000	832620000	472170000	360450000	590600000	281330000	309270000	327680000	164980000	162700000	23402	1270	22165	146404;146405;146406;146407;146408;146409;146410;146411;146412;146413;146414;146415;146416;146417;146418;146419;146420;146421;146422;146423;146424	197875;197876;197877;197878;197879;197880;197881;197882;197883;197884;197885;197886;197887;197888;197889;197890;197891;197892;197893;197894;197895;197896;197897;197898;197899;197900;197901;197902;197903;197904;197905;197906;197907;197908;197909;197910;197911;197912;197913;197914;197915;197916;197917	197892			43	
IAQEVQR	0	Unmodified	842.46102	0.46101552	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	19.334	18.923	2	0.037209	16413	160511_QHF_FH_JSI12i_1	48.761	8.0747			0.6608	0.70059	33.946	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.84057	0.99023	54.02	2	0	Median	0.77583	0.75154	NaN	1	0	Median	0.81375	0.84631	NaN	1	0	Median	547170000	313490000	233680000	0	0	0	235280000	141680000	93600000	161870000	92376000	69495000	150020000	79438000	70584000	23403	3440	22166	146425;146426;146427;146428	197918;197919;197920	197918			3	
IAQFLSDIPETVPLSTVNR	0	Unmodified	2099.1263	0.12626973	923	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								4	2	1	3	98.601	98.429	2;3	5.5527E-07	87117	160511_QHF_FH_JSI10i_2	65.47	61.218			0.91221	0.85115	33.032	7	2	Median	0.91221	0.76633	NaN	1	0	Median	0.76581	0.94349	29.453	2	0	Median	1.2101	1.1955	NaN	1	0	Median	0.77941	0.85115	48.387	3	2	Median	119710000	55916000	63792000	29897000	9607900	20289000	31246000	17302000	13944000	26442000	11464000	14978000	32122000	17541000	14581000	23404	923	22167	146429;146430;146431;146432;146433;146434;146435;146436;146437;146438	197921;197922;197923;197924;197925;197926;197927;197928;197929;197930;197931;197932;197933;197934	197931			13	
IAQGVSGSIQDK	1	Unmodified	1201.6303	0.63026569	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.561	21.433	2	2.0662E-05	18576	160511_QHF_FH_JSI11i_1	111.27	83.962			0.98731	1.0512	14.838	5	0	Median	1.2563	1.0512	NaN	1	0	Median	0.91272	1.0624	NaN	1	0	Median	1.0541	1.0338	29.555	2	0	Median	0.98731	1.03	NaN	1	0	Median	557920000	255570000	302350000	146640000	59804000	86832000	138580000	71867000	66710000	118610000	46447000	72167000	154100000	77455000	76642000	23405	1182	22168	146439;146440;146441;146442;146443	197935;197936;197937;197938;197939;197940;197941;197942;197943	197936			9	
IAQITGPPDR	0	Unmodified	1066.5771	0.57710791	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.94	4	3	1				1			3	2	1	3	30.054	28.214	2	6.4989E-05	25448	160511_QHF_FH_JSI12i_1	90.15	60.677			0.91836	0.99598	13.181	9	2	Median	1.208	1.0112	8.1831	3	0	Plateau	0.85949	1.0269	11.786	2	1	Median	1.026	0.99696	NaN	1	0	Median	0.88109	0.93499	12.758	3	1	Plateau	4211400000	2056800000	2154600000	1053800000	456120000	597670000	1230800000	646570000	584270000	859270000	402370000	456900000	1067500000	551740000	515760000	23406	3966	22169	146444;146445;146446;146447;146448;146449;146450;146451;146452	197944;197945;197946;197947;197948;197949;197950;197951;197952;197953;197954;197955	197947			12	
IAQLCNK	1	Unmodified	845.44292	0.44292261	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.293	12.503	2	0.047323	9806	160511_QHF_FH_JSI12i_2	48.174	22.065			1.8034	2.0677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8034	2.0677	NaN	1	1	Median	47387000	16823000	30564000	0	0	0	0	0	0	0	0	0	47387000	16823000	30564000	23407	1205	22170	146453	197956	197956			1	
IAQLEEELEEEQGNTELINDR	0	Unmodified	2471.1664	0.16635622	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								2	2	2	4	76.934	76.386	2;3	2.3723E-85	69521	160511_QHF_FH_JSI12i_1	296.72	281.68			0.76063	0.78185	29.774	10	3	Median	0.98258	0.84037	0.8463	2	1	Median	0.51153	0.6069	19.415	2	1	Median	0.72052	0.70514	5.2414	2	0	Median	0.8486	0.90005	37.016	4	1	Median	994400000	507020000	487370000	115380000	46580000	68803000	171310000	114380000	56930000	304170000	177740000	126430000	403530000	168330000	235210000	23408	1436	22171	146454;146455;146456;146457;146458;146459;146460;146461;146462;146463	197957;197958;197959;197960;197961;197962;197963;197964;197965;197966;197967;197968;197969;197970	197963			12	
IAQLEEELEEEQGNTELINDRLK	1	Unmodified	2712.3454	0.34538322	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		79.309	79.074	3	4.1144E-08	70243	160511_QHF_FH_JSI10i_2	80.303	73.58			0.87147	0.81452	30.548	3	2	Median	NaN	NaN	NaN	0	0	Median	0.91955	1.1164	NaN	1	0	Median	0.74988	0.70261	20.902	2	2	Median	NaN	NaN	NaN	0	0	Median	152510000	86287000	66222000	0	0	0	62665000	36589000	26075000	89845000	49698000	40147000	0	0	0	23409	1436	22172	146464;146465;146466	197971;197972;197973;197974	197973			4	
IAQLEEQLDNETK	1	Unmodified	1529.7573	0.7573167	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.42	9	3	1			6				2	8	4	5	50.481	46.71	2;3	3.5984E-33	41998	160511_QHF_FH_JSI10i_1	234.61	208.57			1.0425	1.187	144.56	16	14	Median	1.281	1.0546	181.16	2	2	Median	1.0142	1.187	166.53	6	5	Median	1.3959	1.3672	169.15	4	3	Median	0.96335	1.0279	129.77	4	4	Median	5940700000	2706900000	3233900000	1495600000	576170000	919410000	1365300000	719600000	645740000	1604400000	696020000	908370000	1475400000	715070000	760340000	23410	1436	22173	146467;146468;146469;146470;146471;146472;146473;146474;146475;146476;146477;146478;146479;146480;146481;146482;146483;146484;146485	197975;197976;197977;197978;197979;197980;197981;197982;197983;197984;197985;197986;197987;197988;197989;197990;197991;197992;197993;197994;197995;197996;197997;197998;197999	197990			25	
IAQLICER	0	Unmodified	1001.5328	0.53280025	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	33.337	32.232	2	0.0022922	27249	160511_QHF_FH_JSI12i_2	81.191	55.251			1.8656	2.1448	51.907	3	2	Plateau	0.88418	0.76683	NaN	1	1	Median	0.9193	1.135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9001	2.1448	NaN	1	0	Median	932820000	454480000	478340000	270410000	152220000	118190000	331810000	182700000	149110000	0	0	0	330600000	119560000	211040000	23411	1402	22174	146486;146487;146488	198000;198001;198002	198000			3	
IAQMTEEEQFALALK	1	Unmodified	1720.8706	0.87057232	4218	Q96RL1	UIMC1	BRCA1-A complex subunit RAP80	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	82.667	82.155	3	0.053973	74898	160511_QHF_FH_JSI12i_1	19.075	1.3745			0.98265	0.97552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98265	0.97552	NaN	1	0	Median	14320000	9088700	5231000	0	0	0	0	0	0	0	0	0	14320000	9088700	5231000	23412	4218	22175	146489	198003	198003			1	
IAQNLSIFLSSFR	0	Unmodified	1494.8195	0.81946344	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.458	82.149	2	2.3979E-08	45456	160513_QHF_FH_JSI9Kac_6	132.76	97.541			0.76448	0.79029	28.852	4	0	Linear	1.0047	0.8798	NaN	1	0	Median	0.71762	0.84694	NaN	1	0	Median	1.1885	1.1317	NaN	1	0	Median	1.5068	1.5836	NaN	1	0	Median	255080000	128880000	126190000	65352000	33208000	32144000	119700000	66148000	53549000	51526000	21747000	29779000	18501000	7779900	10721000	23413	4986	22176	146490;146491;146492;146493	198004;198005;198006;198007;198008;198009	198006			6	
IAQPGDHVSVTGIFLPILR	0	Unmodified	2032.1469	0.14694559	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.46		3	8						3	4	5	3	2	98.266	96.759	2;3	9.496E-68	87285	160511_QHF_FH_JSI12i_3	187.31	179.45			1.1114	1.0314	16.294	14	0	Median	1.2726	1.1124	6.7933	4	0	Linear	0.76258	0.88261	7.6945	5	0	Median	1.3006	1.2166	19.463	3	0	Median	1.0295	1.0798	21.078	2	0	Median	5867100000	2927400000	2939600000	2062800000	861320000	1201500000	2291500000	1271600000	1019900000	963400000	493000000	470400000	549340000	301480000	247860000	23414	1411	22177	146494;146495;146496;146497;146498;146499;146500;146501;146502;146503;146504;146505;146506;146507	198010;198011;198012;198013;198014;198015;198016;198017;198018;198019;198020;198021;198022;198023;198024;198025;198026	198023			17	
IAQPNYIPTQQDVLR	0	Unmodified	1754.9315	0.93153309	2049	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	63.098	62.462	2	5.4434E-05	56749	160511_QHF_FH_JSI11i_1	116.24	80.824			0.87892	0.92394	6.9219	5	4	Median	1.0423	0.86589	NaN	1	0	Median	0.86788	1.0429	NaN	1	1	Median	0.96027	0.93481	NaN	1	1	Median	0.86847	0.91327	1.6427	2	2	Median	715200000	361190000	354010000	142250000	54748000	87500000	126750000	66156000	60597000	143130000	73171000	69961000	303070000	167120000	135950000	23415	2049	22178	146508;146509;146510;146511;146512	198027;198028;198029;198030;198031;198032	198027			6	
IAQQAAK	1	Unmodified	728.41809	0.41808807	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.9553	4.6412	2	0.026498	2518	160511_QHF_FH_JSI11i_1	54.056	14.295			0.97026	0.998	13.849	4	0	Median	1.4276	1.1508	NaN	1	0	Median	0.7347	0.85598	NaN	1	0	Median	0.93203	0.91866	NaN	1	0	Median	1.0101	1.0842	NaN	1	0	Median	1423300000	733430000	689830000	263090000	121510000	141580000	379920000	216140000	163780000	401970000	205660000	196310000	378280000	190120000	188160000	23416	3896	22179	146513;146514;146515;146516	198033;198034;198035;198036;198037;198038	198034			6	
IAQSAELADREK	1	Unmodified	1329.6888	0.6888432	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.715	15.715	3	0.013365	12935	160511_QHF_FH_JSI11i_3	45.79	38.007			0.81952	0.7697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81952	0.7697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66222000	39402000	26820000	0	0	0	0	0	0	66222000	39402000	26820000	0	0	0	23417	5458	22180	146517	198039	198039			1	
IAQSDYIPTQQDVLR	0	Unmodified	1745.8948	0.89481323	818	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.626	59.98	2	5.07E-05	53092	160511_QHF_FH_JSI9i_1	116.54	93.66			1.2307	0.80882	40.584	4	4	Linear	0.73686	0.59435	NaN	1	1	Median	0.53233	0.63361	NaN	1	1	Median	1.0531	1.0325	NaN	1	1	Median	1.3272	1.3905	NaN	1	1	Median	668050000	411970000	256090000	176290000	126400000	49892000	181320000	138590000	42733000	173180000	92571000	80606000	137270000	54413000	82855000	23418	818	22181	146518;146519;146520;146521	198040;198041;198042;198043	198043			4	
IARDEGGK	1	Unmodified	844.44028	0.44028008	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.83	0.373	1	5								2	1	3		1.4161	1.1592	2	0.0089076	752	160511_QHF_FH_JSI9i_2	91.318	41.96			1.1601	1.2541	97.576	6	0	Median	0.82275	0.71195	132.4	2	0	Median	0.98058	1.2027	NaN	1	0	Median	1.3726	1.3078	118	3	0	Median	NaN	NaN	NaN	0	0	Median	632280000	321180000	311110000	296290000	151570000	144730000	189840000	96078000	93762000	146150000	73530000	72617000	0	0	0	23419	826	22182	146522;146523;146524;146525;146526;146527	198044;198045;198046;198047;198048;198049;198050	198045			7	
IASDEEIQGTK	1	Unmodified	1189.5826	0.5826468	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.35	17.88	2	0.010245	15452	160511_QHF_FH_JSI12i_1	57.347	19.839			0.61665	0.63118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61665	0.63118	NaN	1	1	Median	58022000	39975000	18047000	0	0	0	0	0	0	0	0	0	58022000	39975000	18047000	23420	3805	22183	146528	198051	198051			1	
IASDGLK	1	Unmodified	702.3912	0.39120462	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	2	1	12.698	12.197	2	0.011468	9483	160511_QHF_FH_JSI9i_1	70.912	10.125			0.94855	0.97506	17.019	8	0	Median	1.6078	1.3475	22.292	3	0	Plateau	0.77912	0.94586	16.178	2	0	Median	0.97425	0.97805	17.9	2	0	Median	0.8496	0.8965	NaN	1	0	Median	13927000000	6847600000	7079800000	3468800000	1350600000	2118100000	3450700000	1785900000	1664800000	3804600000	1832100000	1972500000	3203300000	1879000000	1324300000	23421	1948	22184	146529;146530;146531;146532;146533;146534;146535;146536	198052;198053;198054;198055;198056;198057	198055			6	
IASGLGLAWIVGR	0	Unmodified	1311.7663	0.76630566	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	88.029	79.747	2;3	1.7553E-16	45731	160513_QHF_FH_JSI10Kac_6	139.43	109.96			1.103	1.0987	18.572	4	0	Median	1.5707	1.3364	NaN	1	0	Median	0.73037	0.86133	NaN	1	0	Median	1.0984	1.038	NaN	1	0	Median	1.1076	1.1629	NaN	1	0	Median	2045600000	1035100000	1010500000	402110000	136160000	265950000	1206500000	692790000	513730000	329480000	156310000	173170000	107500000	49795000	57706000	23422	214	22185	146537;146538;146539;146540;146541	198058;198059;198060;198061;198062;198063;198064;198065	198064			8	
IASHSHVK	1	Unmodified	877.477	0.47699993	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				4.7397	-2.3143	3	0.011543	1302	160513_QHF_FH_JSI9Kac_6	48.283	22.546			1.0514	0.85354	NaN	1	1	Median	1.0514	0.85354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15494000	6551400	8942400	15494000	6551400	8942400	0	0	0	0	0	0	0	0	0	23423	5496	22186	146542	198066	198066			1	
IASHYYITNDTVQTYNQLLK	1	Unmodified	2384.2012	0.20122559	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.682	72.047	3	8.7368E-12	62416	160511_QHF_FH_JSI12i_3	136.62	121.69			0.99277	0.96682	16.199	6	0	Median	1.1096	0.93596	NaN	1	0	Median	0.81506	0.99024	NaN	1	0	Median	1.0323	0.99903	32.979	2	0	Median	0.99476	1.0322	12.646	2	0	Median	399400000	181830000	217570000	34544000	12763000	21781000	62623000	38712000	23911000	173930000	73784000	100140000	128300000	56573000	71732000	23424	552	22187	146543;146544;146545;146546;146547;146548	198067;198068;198069;198070;198071;198072;198073	198073			7	
IASHYYITNDTVQTYNQLLKPTLSEIELFR	1	Unmodified	3569.8406	0.8405994	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				93.002	84.144	4	1.1584E-09	47374	160513_QHF_FH_JSI9Kac_6	85.19	73.806			1.1324	0.97511	NaN	1	0	Median	1.1324	0.97511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52593000	20834000	31758000	52593000	20834000	31758000	0	0	0	0	0	0	0	0	0	23425	552	22188	146549	198074	198074			1	
IASITDHLIAMLADYFK	1	Unmodified	1921.0019	0.0019208405	3399	Q8IUR7	ARMC8	Armadillo repeat-containing protein 8	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				99.046	89.912	3	0.00011743	51762	160513_QHF_FH_JSI9Kac_6	137.44	100.85			1.9295	1.6472	26.183	2	2	Median	1.9295	1.6472	26.183	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	433460000	161690000	271770000	433460000	161690000	271770000	0	0	0	0	0	0	0	0	0	23426	3399	22189	146550;146551	198075;198076	198075			2	
IASITDHLIAMLADYFK	1	Oxidation (M)	1936.9968	0.99683546	3399	Q8IUR7	ARMC8	Armadillo repeat-containing protein 8	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	97.207	87.765	3	0.0019447	48001	160513_QHF_FH_JSI12Kac_6	63.918	53.283			0.97285	1.0298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97285	1.0298	NaN	1	1	Median	66633000	28964000	37669000	0	0	0	0	0	0	0	0	0	66633000	28964000	37669000	23427	3399	22189	146552	198077	198077		2257	1	
IASLEVENQSLR	0	Unmodified	1357.7201	0.72014333	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.02		4	4				4	4		3	4	5	4	52.24	46.415	2	9.2806E-23	40273	160511_QHF_FH_JSI11i_2	174.98	82.143			1.0516	1.0494	9.4366	16	4	Median	1.1923	0.99387	16.187	3	1	Plateau	0.90383	1.0454	3.7269	4	0	Linear	1.0858	1.0507	8.0215	5	3	Median	0.99461	1.2056	11.045	4	0	Linear	9603700000	4750400000	4853300000	2047000000	1031300000	1015700000	1599600000	880650000	718930000	3761300000	1900500000	1860800000	2195800000	937900000	1257900000	23428	1327	22190	146553;146554;146555;146556;146557;146558;146559;146560;146561;146562;146563;146564;146565;146566;146567;146568	198078;198079;198080;198081;198082;198083;198084;198085;198086;198087;198088;198089;198090;198091;198092;198093;198094;198095;198096;198097;198098;198099;198100	198092			23	
IASLLGLLSK	1	Unmodified	1013.6485	0.64848194	4115	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	93.197	92.652	2	0.0022808	75655	160511_QHF_FH_JSI9i_3	73.985	35.899			1.1253	1.0319	32.739	2	2	Median	1.5861	1.3007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79841	0.81866	NaN	1	1	Median	142630000	91163000	51471000	42691000	23691000	19001000	0	0	0	0	0	0	99943000	67473000	32470000	23429	4115	22191	146569;146570	198101;198102	198101			2	
IASLPQEVQDVSLLEK	1	Unmodified	1767.9618	0.96183016	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	86.172	85.719	2;3	7.1479E-07	78185	160511_QHF_FH_JSI11i_1	98.507	86.865			0.95519	0.96237	4.621	8	0	Median	1.2156	1.0036	6.6658	2	0	Median	0.81381	0.93843	4.294	2	0	Median	0.9905	0.95806	1.6446	2	0	Median	0.89863	0.95244	5.784	2	0	Median	434570000	203430000	231140000	109610000	39312000	70299000	82171000	40416000	41755000	130190000	70177000	60017000	112590000	53522000	59072000	23430	4921	22192	146571;146572;146573;146574;146575;146576;146577;146578	198103;198104;198105;198106;198107;198108;198109;198110;198111;198112;198113	198104			11	
IASLPVEVQEVSLLDK	1	Unmodified	1738.9717	0.97166657	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	95.262	95.053	3	0.00044205	86436	160511_QHF_FH_JSI11i_1	55.975	51.584			0.70675	0.78138	17.833	4	2	Median	NaN	NaN	NaN	0	0	Median	0.59233	0.67615	25.219	2	1	Median	0.8598	0.83782	NaN	1	0	Median	0.72032	0.7555	NaN	1	1	Median	46200000	24762000	21438000	0	0	0	24319000	13329000	10990000	14158000	6020200	8137400	7722800	5412200	2310600	23431	4189	22193	146579;146580;146581;146582	198114;198115;198116;198117	198114			4	
IASMAPGALLLEAQK	1	Unmodified	1511.8381	0.83814998	4667	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	80.618	80.1	3	8.2234E-05	70618	160511_QHF_FH_JSI9i_2	59.607	38.307			0.94776	0.96185	33.01	7	2	Median	1.0301	0.90187	NaN	1	0	Median	0.747	0.96185	NaN	1	0	Median	0.94651	0.93706	7.6287	2	0	Median	0.99076	1.0413	55.156	3	2	Median	103160000	53746000	49411000	13399000	6728000	6670600	12680000	7065100	5614600	34668000	15981000	18687000	42411000	23972000	18439000	23432	4667	22194	146583;146584;146585;146586;146587;146588;146589	198118;198119;198120;198121;198122;198123;198124;198125;198126;198127	198121			10	
IASNAGSIA	0	Unmodified	802.41848	0.418482	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.18	7			1	3					2	2	3	4	25.77	22.42	1;2	0.00063171	19526	160511_QHF_FH_JSI9i_1	77.058	59.496			0.9347	0.99011	8.8631	11	0	Median	1.332	1.0682	8.1794	2	0	Median	0.78624	0.94404	7.9638	2	0	Median	1.1093	1.0823	12.294	3	0	Median	0.90031	0.95402	5.0425	4	0	Median	6195100000	3048000000	3147000000	1695900000	736000000	959910000	617550000	376020000	241530000	1907200000	956360000	950830000	1974400000	979660000	994740000	23433	2022	22195	146590;146591;146592;146593;146594;146595;146596;146597;146598;146599;146600	198128;198129;198130;198131;198132;198133;198134;198135;198136;198137;198138;198139;198140	198135			12	
IASPEGQDYLK	1	Unmodified	1219.6085	0.60846762	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.66	2					1				1	1	1		39.228	38.432	2	0.00052328	34072	160511_QHF_FH_JSI9i_1	85.533	50.177			0.54644	0.54026	8.6272	2	2	Median	0.61364	0.50829	NaN	1	1	Median	0.4866	0.57425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1019300000	644520000	374800000	499790000	313830000	185950000	519530000	330690000	188840000	0	0	0	0	0	0	23434	5596	22196	146601;146602;146603	198141;198142;198143;198144	198144			4	
IASQMITEGR	0	Unmodified	1104.5597	0.55974328	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	2	3	2	30.5	27.577	2	1.6032E-05	23943	160511_QHF_FH_JSI9i_2	99.688	70.311			1.0459	1.0538	18.025	8	2	Median	1.4152	1.1819	NaN	1	0	Median	0.69534	0.82617	13.926	2	1	Median	1.2154	1.2237	3.7135	3	1	Plateau	0.86812	0.92782	6.1615	2	0	Median	997450000	485640000	511810000	227250000	109990000	117260000	150980000	85908000	65070000	386660000	173120000	213540000	232560000	116630000	115930000	23435	4411	22197	146604;146605;146606;146607;146608;146609;146610;146611	198145;198146;198147;198148;198149;198150;198151;198152	198149			8	
IASQMITEGR	0	Oxidation (M)	1120.5547	0.55465791	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	28.844	27.544	2	0.015029	23184	160511_QHF_FH_JSI12i_2	48.283	24.855			1.189	1.2737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.189	1.2737	NaN	1	0	Median	41994000	23806000	18188000	0	0	0	0	0	0	0	0	0	41994000	23806000	18188000	23436	4411	22197	146612	198153	198153		2467	1	
IASQVAALDLGYKPGVEAIR	1	Unmodified	2070.1473	0.14733952	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	72.62	72.115	3	1.1188E-05	62563	160511_QHF_FH_JSI12i_3	75.334	65.194			0.853	0.84561	28.282	5	1	Median	1.3143	1.1479	NaN	1	1	Median	0.44054	0.52903	NaN	1	0	Median	0.86348	0.82406	12.021	2	0	Median	0.853	0.84561	NaN	1	0	Median	375480000	197490000	177990000	27311000	13947000	13364000	53092000	28800000	24291000	169270000	83478000	85795000	125800000	71262000	54542000	23437	1306	22198	146613;146614;146615;146616;146617	198154;198155;198156;198157;198158;198159;198160	198159			7	
IASQVAALDLGYKPGVEAIRK	2	Unmodified	2198.2423	0.24230254	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							3	1	1		65.204	64.007	3;4	1.3319E-07	52489	160511_QHF_FH_JSI9i_3	87.772	79.172			0.88631	0.85559	25.74	5	2	Median	0.90651	0.71826	33.397	3	2	Median	0.77099	0.87575	NaN	1	0	Median	0.88631	0.85559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	540980000	284600000	256370000	207510000	107430000	100080000	161030000	90852000	70178000	172440000	86318000	86118000	0	0	0	23438	1306	22199	146618;146619;146620;146621;146622	198161;198162;198163;198164;198165;198166;198167;198168	198165			8	
IASVWFGPK	1	Unmodified	1003.5491	0.54910224	5688	Q9Y5Y0	FLVCR1	Feline leukemia virus subgroup C receptor-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.577	62.575	2	0.0030296	55534	160511_QHF_FH_JSI11i_3	62.107	38.314			0.86214	0.81819	10.839	3	0	Plateau	1.2433	1.0159	NaN	1	0	Median	0.7905	0.90164	NaN	1	0	Median	0.86214	0.81819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	120310000	65149000	55162000	27259000	13300000	13960000	36344000	20538000	15806000	56707000	31311000	25396000	0	0	0	23439	5688	22200	146623;146624;146625	198169;198170	198169			2	
IASWADLVNAHVVPGSGVVK	1	Unmodified	2018.0949	0.094910023	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		2	6						2	3	2	2	3	87.606	85.457	2;3	7.9346E-11	78527	160511_QHF_FH_JSI11i_3	150.57	136.61			0.99191	0.94992	10.196	10	0	Median	1.0886	0.92589	9.9998	3	0	Median	0.77946	0.93376	16.7	2	0	Median	0.95351	0.90512	11.942	2	0	Median	0.88369	0.89779	10.353	3	0	Plateau	2733800000	1415500000	1318300000	353810000	150660000	203150000	454400000	251970000	202440000	604580000	312130000	292450000	1321100000	700760000	620290000	23440	989	22201	146626;146627;146628;146629;146630;146631;146632;146633;146634;146635	198171;198172;198173;198174;198175;198176;198177;198178;198179;198180;198181;198182;198183;198184;198185;198186;198187;198188;198189;198190	198174			20	
IASYYYLK	1	Unmodified	1019.5328	0.53278348	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	55.662	45.872	2	0.025991	23914	160513_QHF_FH_JSI12Kac_6	52.403	25.273			0.90967	0.9307	1.8718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94289	0.91846	NaN	1	0	Median	0.87763	0.9431	NaN	1	0	Median	17948000	10287000	7661300	0	0	0	0	0	0	11919000	6284800	5634400	6028800	4001900	2026900	23441	3516	22202	146636;146637	198191;198192	198192			2	
IATANMLGIRK	1	Unmodified	1186.6856	0.6856125	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.099	40.578	3	0.059182	33871	160511_QHF_FH_JSI10i_3	21.759	7.5237			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8878400	0	8878400	0	0	0	8878400	0	8878400	0	0	0	0	0	0	23442	5088	22203	146638	198193	198193			1	
IATCSDDNTLK	1	Unmodified	1236.5656	0.56561652	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	36.872	35.962	3	0.058791	29255	160511_QHF_FH_JSI9i_3	15.539	1.2818			1.1153	0.92527	20.573	5	0	Linear	1.1533	0.92527	0	2	0	Median	0.85341	0.96854	NaN	1	0	Median	0.72302	0.67607	NaN	1	0	Median	0.61817	0.62255	NaN	1	0	Median	851140000	413960000	437180000	465310000	206600000	258710000	162870000	89540000	73334000	141450000	68943000	72504000	81507000	48876000	32631000	23443	5154	22204	146639;146640;146641;146642;146643	198194	198194			1	
IATEAIENFR	0	Unmodified	1162.5982	0.59823728	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.988	48.59	2	0.04902	41553	160511_QHF_FH_JSI12i_2	35.826	20.675			1.5473	1.6722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5473	1.6722	NaN	1	0	Median	43219000	16030000	27189000	0	0	0	0	0	0	0	0	0	43219000	16030000	27189000	23444	894	22205	146644	198195	198195			1	
IATEFNQLQFHAVQSK	1	Unmodified	1859.953	0.95299681	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2.5	0.5		2	2							1		1	2	61.063	60.426	3	4.967E-05	52095	160511_QHF_FH_JSI12i_3	76.713	61.791			1.3233	1.2289	43.545	4	0	Median	1.092	0.9273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7941	1.6697	NaN	1	0	Median	0.99911	1.0593	60.828	2	0	Median	269160000	111490000	157660000	21772000	11661000	10111000	0	0	0	100590000	29330000	71261000	146790000	70501000	76291000	23445	2572	22206	146645;146646;146647;146648	198196;198197	198197			1	
IATELLK	1	Unmodified	786.48511	0.485105	3865	Q92626	PXDN	Peroxidasin homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.615	8.4179	2	0.035052	5925	160511_QHF_FH_JSI11i_2	50.966	0			0.012176	0.012451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.012176	0.012451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	928170000	913560000	14614000	0	0	0	0	0	0	928170000	913560000	14614000	0	0	0	23446	3865	22207	146649	198198	198198			1	
IATFPGMWER	0	Unmodified	1206.5856	0.5855641	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	1	3	1	68.926	68.167	2	9.0806E-05	60635	160511_QHF_FH_JSI11i_3	91.069	67.64			0.91351	0.98755	13.946	7	3	Median	1.1171	0.91793	23.679	2	1	Median	0.85632	0.98755	NaN	1	0	Median	0.8788	0.8847	16.348	3	2	Median	0.96831	1.0043	NaN	1	0	Median	717940000	358610000	359330000	102960000	43512000	59450000	68296000	35043000	33253000	342320000	168690000	173620000	204370000	111370000	92999000	23447	3176	22208	146650;146651;146652;146653;146654;146655;146656	198199;198200;198201;198202;198203;198204;198205;198206;198207;198208	198199			10	
IATGHGQQGVTQVVLK	1	Unmodified	1634.9104	0.91040372	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	4	4	3	39.324	36.042	2;3	3.0805E-10	30537	160511_QHF_FH_JSI12i_3	145.17	129.59			1.1147	1.1132	9.1601	13	2	Median	1.1147	0.95756	8.061	3	1	Plateau	0.85892	1.0091	11.806	3	1	Plateau	1.2428	1.1835	4.2634	4	0	Median	1.0352	1.039	9.5259	3	0	Median	2235600000	1093400000	1142200000	146000000	71817000	74186000	288280000	139470000	148810000	913780000	413310000	500470000	887530000	468840000	418690000	23448	1743	22209	146657;146658;146659;146660;146661;146662;146663;146664;146665;146666;146667;146668;146669;146670	198209;198210;198211;198212;198213;198214;198215;198216;198217;198218;198219;198220;198221;198222;198223;198224;198225;198226;198227;198228;198229;198230;198231	198229			23	
IATGHNIIDELPPCK	1	Unmodified	1676.8556	0.85559095	2740	Q16563	SYPL1	Synaptophysin-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	55.343	55.263	3	1.0467E-05	49046	160511_QHF_FH_JSI11i_3	99.451	89.32			0.83909	0.78088	55.929	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81503	0.76589	2.7415	2	0	Median	1.9641	2.0166	NaN	1	1	Median	413520000	160610000	252910000	0	0	0	0	0	0	232650000	125040000	107610000	180870000	35570000	145300000	23449	2740	22210	146671;146672;146673;146674	198232;198233;198234;198235	198233			4	
IATGQIAGVDK	1	Unmodified	1071.5924	0.59242362	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.676	31.074	2	0.0038488	27177	160511_QHF_FH_JSI9i_1	55.314	34.014			0.93818	0.92628	16.19	4	0	Median	1.0477	0.85712	NaN	1	0	Median	0.8551	1.001	NaN	1	0	Median	0.76878	0.74564	NaN	1	0	Median	1.0293	1.0702	NaN	1	0	Median	629000000	337650000	291340000	137810000	62628000	75183000	160360000	103950000	56407000	163110000	84328000	78786000	167710000	86743000	80967000	23450	4848	22211	146675;146676;146677;146678	198236;198237;198238;198239;198240	198239			5	
IATGSFLK	1	Unmodified	835.48035	0.48035398	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.38	3	4	6					1		2	3	5	4	41.994	40.609	1;2	0.0055642	35033	160511_QHF_FH_JSI12i_2	65.252	41.28			1.0961	1.0447	17.644	14	0	Median	1.113	0.92316	2.4485	2	0	Median	0.84948	1.0206	15.97	3	0	Median	1.1145	1.1111	19.483	5	0	Median	1.0181	1.0859	17.784	4	0	Median	10387000000	4862200000	5524700000	1588700000	658490000	930180000	2297600000	1138300000	1159300000	3379700000	1625100000	1754600000	3120900000	1440300000	1680600000	23451	1206	22212	146679;146680;146681;146682;146683;146684;146685;146686;146687;146688;146689;146690;146691;146692	198241;198242;198243;198244;198245;198246;198247;198248;198249;198250;198251;198252;198253;198254	198244			13	
IATIGSDRK	1	Unmodified	959.53999	0.53999412	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		10.277	9.9217	3	0.017276	7528	160511_QHF_FH_JSI11i_3	38.303	18.517			2.5949	2.2912	48.365	2	2	Median	1.987	1.6276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.3889	3.2255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	244210000	67860000	176350000	116050000	30671000	85381000	0	0	0	128160000	37189000	90968000	0	0	0	23452	3989	22213	146693;146694	198255;198256	198255			2	
IATLGYLPTQQDVLR	0	Unmodified	1686.9305	0.93047046	1330	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.33	6.13		2						1			1	1	1	80.193	76.044	2	2.1809E-05	67841	160511_QHF_FH_JSI12i_2	123.8	106.36			0.78977	0.88525	9.7085	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74894	0.91584	NaN	1	0	Median	0.78977	0.75623	NaN	1	0	Median	0.79984	0.85568	NaN	1	0	Median	86991000	49323000	37668000	0	0	0	43875000	27211000	16664000	1554300	829090	725200	41562000	21283000	20279000	23453	1330	22214	146695;146696;146697	198257;198258;198259;198260	198258			4	
IATLISSFLK	1	Unmodified	1091.659	0.65904662	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		2	8						4	4	3	3	4	90.131	87.378	2	9.8498E-07	76201	160511_QHF_FH_JSI10i_3	120.12	66.953			1.6973	1.5082	97.86	12	8	Median	1.7838	1.4985	108.4	3	2	Median	1.8196	2.1841	155.32	3	2	Median	3.3097	3.0693	102.01	3	2	Plateau	1.1077	1.203	77.079	3	2	Median	4033700000	1751100000	2282600000	883990000	369620000	514370000	563990000	270690000	293300000	937140000	417150000	520000000	1648600000	693670000	954950000	23454	690	22215	146698;146699;146700;146701;146702;146703;146704;146705;146706;146707;146708;146709;146710;146711	198261;198262;198263;198264;198265;198266;198267;198268;198269;198270;198271;198272;198273;198274;198275;198276;198277;198278;198279;198280;198281	198266			21	
IATMETMNIFLEK	1	Unmodified	1539.7677	0.76768715	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		89.524	88.986	2	0.00080679	78267	160511_QHF_FH_JSI11i_2	79.201	60.529			1.2596	1.2348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2596	1.2348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11316000	4927200	6388300	0	0	0	0	0	0	11316000	4927200	6388300	0	0	0	23455	232	22216	146712	198282	198282			1	
IATPQIVINYAMFLEEHK	1	Unmodified	2116.1027	0.10269752	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				94.14	85.2	3	1.2533E-05	48175	160513_QHF_FH_JSI9Kac_6	83.849	74.375			0.47531	0.4017	NaN	1	0	Median	0.47531	0.4017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57167000	43322000	13845000	57167000	43322000	13845000	0	0	0	0	0	0	0	0	0	23456	4863	22217	146713	198283	198283			1	
IATSLDGFDVASVQQQR	0	Unmodified	1833.9221	0.92209062	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	69.948	69.285	2;3	3.6474E-159	61669	160511_QHF_FH_JSI9i_1	358.82	343.95			1.0547	1.0634	10.261	12	0	Median	1.2789	1.0417	3.9906	3	0	Plateau	0.94056	1.1104	10.747	3	0	Median	1.049	1.0266	7.3879	3	0	Plateau	1.0088	1.0555	10.676	3	0	Plateau	5158300000	2527200000	2631000000	1011200000	468010000	543210000	1578500000	814350000	764100000	1240400000	574650000	665740000	1328200000	670230000	657990000	23457	434	22218	146714;146715;146716;146717;146718;146719;146720;146721;146722;146723;146724;146725	198284;198285;198286;198287;198288;198289;198290;198291;198292;198293;198294;198295;198296;198297;198298;198299;198300;198301;198302;198303;198304;198305;198306	198298			23	
IATTTASAATAAAIGATPR	0	Unmodified	1714.9214	0.92136233	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.13	3.2	10	4					1			4	3	5	3	54.533	52.967	2;3	2.5508E-55	45840	160511_QHF_FH_JSI11i_2	176.89	151.42			1.0435	0.95065	29.496	13	7	Median	1.2862	1.0754	36.745	4	4	Median	1.0435	1.2128	31.619	3	2	Median	0.96129	0.93711	29.955	3	0	Median	0.91511	0.95065	33.813	3	1	Median	690300000	334200000	356100000	208260000	95067000	113200000	201730000	105270000	96468000	124290000	58008000	66278000	156010000	75857000	80156000	23458	2587	22219	146726;146727;146728;146729;146730;146731;146732;146733;146734;146735;146736;146737;146738;146739;146740	198307;198308;198309;198310;198311;198312;198313;198314;198315;198316;198317;198318;198319;198320;198321;198322;198323;198324	198323			18	
IAVAAQNCYK	1	Unmodified	1136.5648	0.56482866	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.94	4	4	4				3	3		3	5	5	5	28.446	24.851	2	9.615E-19	21041	160511_QHF_FH_JSI11i_2	170.06	129.79			1.0093	1.1166	30.859	18	0	Median	1.44	1.1537	14.876	3	0	Median	0.91125	1.0806	12.235	5	0	Median	0.785	0.77631	14.149	5	0	Median	1.4157	1.5096	17.829	5	0	Median	10808000000	5623600000	5183900000	1419700000	679200000	740450000	2474600000	1215800000	1258800000	3822200000	2268900000	1553300000	3091200000	1459800000	1631400000	23459	1908	22220	146741;146742;146743;146744;146745;146746;146747;146748;146749;146750;146751;146752;146753;146754;146755;146756;146757;146758	198325;198326;198327;198328;198329;198330;198331;198332;198333;198334;198335;198336;198337;198338;198339;198340;198341;198342;198343;198344;198345;198346;198347;198348;198349;198350;198351;198352;198353	198346			29	
IAVAHNGELVNAAR	0	Unmodified	1433.7739	0.77391024	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7								2	3	5	31.447	30.967	2;3	1.0196E-12	25980	160511_QHF_FH_JSI12i_3	119.16	74.018			1.011	1.1128	41.157	8	5	Median	NaN	NaN	NaN	0	0	Median	1.0306	1.23	21.982	2	1	Median	0.6635	0.6185	15.821	2	1	Median	1.1649	1.1993	33.729	4	3	Median	917670000	448690000	468980000	0	0	0	149730000	69887000	79845000	214180000	124520000	89665000	553750000	254280000	299470000	23460	2241	22221	146759;146760;146761;146762;146763;146764;146765;146766;146767;146768	198354;198355;198356;198357;198358;198359;198360;198361;198362;198363	198363			10	
IAVEAQNK	1	Unmodified	871.47633	0.47633123	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			12.385	12.148	2	0.0084749	9873	160511_QHF_FH_JSI10i_1	66.799	34.838			1.2235	1.4178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2235	1.4178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	206830000	116470000	90359000	0	0	0	206830000	116470000	90359000	0	0	0	0	0	0	23461	1016	22222	146769	198364	198364			1	
IAVEFLR	0	Unmodified	846.49634	0.49633839	3373	Q86X83	COMMD2	COMM domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		60.157	59.471	2	0.042042	51650	160511_QHF_FH_JSI11i_2	46.37	7.1522			0.71528	0.79091	8.944	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69591	0.84255	NaN	1	0	Median	0.73519	0.74244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112600000	55317000	57283000	0	0	0	42168000	23596000	18572000	70432000	31721000	38711000	0	0	0	23462	3373	22223	146770;146771	198365;198366	198365			2	
IAVEPVNPSELPK	1	Unmodified	1391.766	0.76603089	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			3	2	2	1	63.952	61.73	2;3	6.0694E-05	56381	160511_QHF_FH_JSI12i_1	107.11	81.175			1.0904	0.95511	20.512	7	3	Median	1.1734	0.95511	31.634	3	3	Median	0.74191	0.89536	NaN	1	0	Median	1.0987	1.0794	7.8188	2	0	Median	0.89223	0.93944	NaN	1	0	Median	2830000000	1361000000	1469100000	1263300000	550120000	713160000	613730000	360010000	253720000	508850000	230990000	277860000	444190000	219860000	224340000	23463	2609	22224	146772;146773;146774;146775;146776;146777;146778;146779	198367;198368;198369;198370;198371;198372;198373;198374;198375;198376;198377	198370			11	
IAVHCTVR	0	Unmodified	954.50692	0.50691985	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	13.136	12.675	2;3	0.00067884	10038	160511_QHF_FH_JSI10i_3	67.494	36.19			0.93337	0.89159	30.508	7	1	Median	1.0904	0.87986	1.873	2	0	Median	1.0312	1.1942	39.915	2	0	Median	0.68563	0.64457	9.7124	2	0	Median	0.93337	0.97315	NaN	1	1	Median	2849000000	1354500000	1494600000	688260000	290170000	398090000	1094600000	500470000	594100000	541950000	304340000	237620000	524260000	259500000	264760000	23464	2038	22225	146780;146781;146782;146783;146784;146785;146786;146787;146788	198378;198379;198380;198381;198382;198383;198384;198385;198386;198387;198388	198382			11	
IAVHEPSFMISQLK	1	Unmodified	1598.849	0.84904901	5198	Q9P246	STIM2	Stromal interaction molecule 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.044	69.746	3	8.5424E-05	60395	160511_QHF_FH_JSI12i_3	77.776	70.795			1.007	1.0186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.007	1.0186	NaN	1	0	Median	51371000	26389000	24982000	0	0	0	0	0	0	0	0	0	51371000	26389000	24982000	23465	5198	22226	146789	198389	198389			1	
IAVHPDYQGMGYGSR	0	Unmodified	1649.762	0.76202492	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6								3	2	3	41.491	40.935	2;3	1.1514E-22	34891	160511_QHF_FH_JSI12i_3	141.82	123.72			1.0145	1.0721	17.071	7	2	Median	NaN	NaN	NaN	0	0	Median	1.0088	1.2231	16.695	3	1	Median	1.0824	1.0088	7.9791	2	0	Median	0.97852	0.98829	15.852	2	1	Median	1064900000	538180000	526760000	0	0	0	223340000	113350000	109990000	454220000	216940000	237280000	387390000	207890000	179500000	23466	4623	22227	146790;146791;146792;146793;146794;146795;146796;146797	198390;198391;198392;198393;198394;198395;198396;198397;198398;198399;198400	198398			11	
IAVHPDYQGMGYGSR	0	Oxidation (M)	1665.7569	0.75693954	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	30.88	30.847	3	0.020989	26887	160511_QHF_FH_JSI11i_3	40.857	33.799			0.92505	0.91396	7.2018	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	0.96171	NaN	1	1	Median	0.84801	0.86858	NaN	1	1	Median	97314000	51153000	46161000	0	0	0	0	0	0	30735000	14095000	16640000	66580000	37058000	29521000	23467	4623	22227	146798;146799	198401;198402	198401		2504	2	
IAVMELFRPK	1	Oxidation (M)	1218.6795	0.67946449	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	57.114	56.042	3	0.0072441	46546	160511_QHF_FH_JSI10i_3	51.436	46.97			0.79486	0.80908	20.76	6	0	Median	1.0431	0.85127	33.628	2	0	Median	0.82961	0.96921	13.271	2	0	Median	0.7681	0.74186	NaN	1	0	Median	0.6997	0.7103	NaN	1	0	Median	328800000	180680000	148130000	132640000	65798000	66837000	105020000	58686000	46337000	62252000	40663000	21589000	28894000	15531000	13363000	23468	2734	22228	146800;146801;146802;146803;146804;146805	198403;198404;198405;198406;198407;198408	198405		2113	6	
IAVMELFRPK	1	Unmodified	1202.6845	0.68454987	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.47		2	12						4	6	6	3	3	73.998	71.213	2;3	2.8663E-08	60438	160511_QHF_FH_JSI10i_3	104.05	104.05			0.96708	0.91737	31.328	16	3	Median	1.1247	0.90848	29.372	5	2	Median	0.93911	1.082	50.511	5	1	Median	0.96799	0.91916	3.7262	3	0	Plateau	0.71808	0.73923	21.798	3	0	Plateau	4051400000	2069900000	1981500000	884510000	391840000	492670000	968140000	528950000	439190000	1622700000	810480000	812240000	575990000	338610000	237380000	23469	2734	22228	146806;146807;146808;146809;146810;146811;146812;146813;146814;146815;146816;146817;146818;146819;146820;146821;146822;146823	198409;198410;198411;198412;198413;198414;198415;198416;198417;198418;198419;198420;198421;198422;198423;198424;198425;198426;198427;198428;198429;198430;198431;198432;198433;198434;198435;198436;198437;198438;198439;198440;198441;198442;198443;198444;198445;198446;198447;198448;198449	198417			41	
IAVQPGTVGPQGR	0	Unmodified	1278.7044	0.70443369	904	P08572	COL4A2	Collagen alpha-2(IV) chain;Canstatin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.409	33.079	2	0.0043617	28059	160511_QHF_FH_JSI12i_2	62.823	43.729			1.4534	1.6438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4534	1.6438	NaN	1	1	Median	10779000	4186700	6592800	0	0	0	0	0	0	0	0	0	10779000	4186700	6592800	23470	904	22229	146824	198450	198450			1	
IAVSIEDEANK	1	Unmodified	1187.6034	0.60338224	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.729	39.988	2	7.5259E-05	35821	160511_QHF_FH_JSI10i_1	109.29	83.396			0.88174	1.0256	23.005	3	1	Median	0.84653	0.69466	NaN	1	1	Median	0.88174	1.0256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0024	1.0434	NaN	1	0	Median	316090000	177040000	139050000	47358000	25260000	22098000	149210000	85695000	63514000	0	0	0	119520000	66081000	53440000	23471	5147	22230	146825;146826;146827;146828	198451;198452;198453;198454	198453			4	
IAVSIVK	1	Unmodified	728.47963	0.47962569	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.523	40.064	2	0.033472	34330	160511_QHF_FH_JSI11i_2	52.018	16.817			1.0768	1.0886	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0768	1.0886	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128180000	67752000	60428000	0	0	0	0	0	0	128180000	67752000	60428000	0	0	0	23472	1772	22231	146829	198455	198455			1	
IAVSNLHK	1	Unmodified	880.51305	0.51305109	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.69		5	8						4	5	4	4	4	20.851	18.268	2;3	0.0004944	14969	160511_QHF_FH_JSI10i_3	84.498	38.072			1.0559	1.038	23.487	16	4	Median	1.0466	0.86684	26.31	4	1	Median	0.92977	1.2649	28.989	4	1	Linear	1.0635	1.038	6.1064	4	0	Median	1.1717	1.2247	12.658	4	2	Median	15088000000	7120500000	7967100000	2608100000	1151600000	1456500000	2039900000	1032600000	1007300000	4668200000	2430400000	2237700000	5771400000	2505900000	3265500000	23473	1242	22232	146830;146831;146832;146833;146834;146835;146836;146837;146838;146839;146840;146841;146842;146843;146844;146845;146846	198456;198457;198458;198459;198460;198461;198462;198463;198464;198465;198466;198467;198468;198469;198470;198471;198472;198473;198474;198475;198476;198477;198478;198479;198480	198462			25	
IAVSNLHKETK	2	Acetyl (K)	1280.7089	0.70885036	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.7	0.471								2	4		2	4		37.152	27.726	2;3	0.0018012	15397	160513_QHF_FH_JSI11Kac_6	58.487	35.569			1.1606	1.3802	122.45	5	2	Median	NaN	NaN	NaN	0	0	Median	1.8221	2.1454	62.379	2	1	Median	0.28199	0.27405	133.22	3	1	Median	NaN	NaN	NaN	0	0	Median	171890000	124300000	47591000	0	0	0	25555000	6117700	19437000	146330000	118180000	28154000	0	0	0	23474	1242	22233	146847;146848;146849;146850;146851;146852	198481;198482;198483;198484;198485;198486	198481	1137		6	
IAVVAFFPENGVSDFQK	1	Unmodified	1866.9516	0.95159983	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.046	97.744	3	0.0054058	84015	160511_QHF_FH_JSI12i_2	43.791	38.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23475	3470	22234	146853	198487	198487			1	
IAVVGAGIGGSAVAHFLQQHFGPR	0	Unmodified	2388.2815	0.28148202	3597	Q8NBM8	PCYOX1L	Prenylcysteine oxidase-like	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			86.942	81.223	3;4	1.3102E-52	45740	160513_QHF_FH_JSI10Kac_6	183.56	171.94			0.77596	0.92717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77596	0.92717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	317320000	182440000	134880000	0	0	0	317320000	182440000	134880000	0	0	0	0	0	0	23476	3597	22235	146854;146855	198488;198489	198488			2	
IAVVTADGK	1	Unmodified	872.49673	0.49673232	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	3.4	4.8	4					1				1	1	1	2	25.964	23.85	2	0.0040034	20398	160511_QHF_FH_JSI9i_1	57.859	24.062			1.256	1.1104	43.505	5	1	Median	1.363	1.1104	NaN	1	0	Median	0.82626	0.96231	NaN	1	0	Median	0.79612	0.76626	NaN	1	0	Median	1.6625	1.7751	44.13	2	1	Median	431480000	194550000	236920000	133340000	60670000	72665000	72064000	35896000	36168000	105400000	40001000	65399000	120680000	57987000	62691000	23477	4036	22236	146856;146857;146858;146859;146860	198490;198491;198492;198493	198491			4	
IAVYHLQELASAELAK	1	Unmodified	1754.9567	0.95668521	4173	Q96ME7	ZNF512	Zinc finger protein 512	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	76.441	76.302	3	5.9249E-06	66308	160511_QHF_FH_JSI12i_3	108.34	89.262			0.82186	0.79974	17.3	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7634	0.70765	NaN	1	0	Median	0.8848	0.9038	NaN	1	0	Median	80020000	43508000	36512000	0	0	0	0	0	0	38577000	22055000	16521000	41443000	21453000	19990000	23478	4173	22237	146861;146862	198494	198494			1	
IAVYSCPFDGMITETK	1	Unmodified	1830.8532	0.85320769	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.598	9	8	1							5	4	5	4	80.212	79.565	2;3	7.9737E-52	69953	160511_QHF_FH_JSI11i_2	262	232.23			0.9805	1.0313	17.504	17	3	Median	1.1469	1.0313	11.887	5	3	Median	0.86433	1.0287	8.6766	4	0	Median	0.87675	0.84418	3.1718	4	0	Median	1.3837	1.2931	10.07	4	0	Linear	1831000000	940410000	890590000	229870000	117130000	112730000	478880000	238390000	240490000	671470000	369270000	302200000	450780000	215610000	235160000	23479	1721	22238	146863;146864;146865;146866;146867;146868;146869;146870;146871;146872;146873;146874;146875;146876;146877;146878;146879;146880	198495;198496;198497;198498;198499;198500;198501;198502;198503;198504;198505;198506;198507;198508;198509;198510;198511;198512;198513;198514;198515;198516;198517;198518;198519;198520;198521;198522;198523;198524;198525;198526;198527;198528;198529;198530;198531;198532;198533;198534	198531			40	
IAVYSCPFDGMITETK	1	Oxidation (M)	1846.8481	0.84812231	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	3											1	2	67.3	66.686	2	0.00051613	60623	160511_QHF_FH_JSI11i_1	72.652	66.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11775000	0	11775000	0	0	0	0	0	0	0	0	0	11775000	0	11775000	23480	1721	22238	146881;146882;146883	198535;198536;198537	198535		1398	3	
IAWALSR	0	Unmodified	815.46537	0.46537261	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	48.934	47.885	2	0.010636	39369	160511_QHF_FH_JSI9i_3	73.975	45.72			0.84723	0.87934	11.001	7	0	Median	1.1653	0.96632	20.423	2	0	Median	0.77065	0.92439	7.0656	2	0	Median	0.90635	0.89876	NaN	1	0	Median	0.77153	0.8269	1.065	2	0	Median	2443700000	1268600000	1175000000	851850000	391780000	460070000	887910000	500260000	387660000	210960000	107760000	103190000	492980000	268850000	224130000	23481	2221	22239	146884;146885;146886;146887;146888;146889;146890	198538;198539;198540;198541;198542	198540			5	
IAWFLVTSANLSK	1	Unmodified	1448.8028	0.80275075	5018	Q9NUW8	TDP1	Tyrosyl-DNA phosphodiesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	2	1	88.358	79.642	2	8.614E-08	45556	160513_QHF_FH_JSI10Kac_6	123.8	97.862			0.60491	0.61614	38.592	5	1	Median	0.60491	0.52778	NaN	1	0	Median	0.87368	1.0462	NaN	1	0	Median	0.59186	0.56769	53.568	2	1	Median	0.57679	0.61614	NaN	1	0	Median	271660000	174230000	97425000	64826000	39367000	25459000	96435000	68025000	28409000	66519000	37615000	28904000	43875000	29223000	14653000	23482	5018	22240	146891;146892;146893;146894;146895	198543;198544;198545;198546;198547	198547			5	
IAWPPPTELGSSGSALEEGIK	1	Unmodified	2138.0895	0.089549874	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	8	9								3	3	7	4	88.149	87.634	2;3	2.4988E-15	79718	160511_QHF_FH_JSI11i_1	102.37	92.786			1.1894	1.1702	36.823	15	9	Median	0.88197	0.75718	31.693	3	2	Median	0.5485	0.64118	34.134	3	2	Median	1.4057	1.3654	16.707	5	4	Median	1.0234	1.0617	11.436	4	1	Linear	413550000	205920000	207630000	45820000	26488000	19332000	85938000	55139000	30800000	180760000	70601000	110160000	101030000	53687000	47345000	23483	5293	22241	146896;146897;146898;146899;146900;146901;146902;146903;146904;146905;146906;146907;146908;146909;146910;146911;146912	198548;198549;198550;198551;198552;198553;198554;198555;198556;198557;198558;198559;198560;198561;198562;198563;198564;198565;198566;198567;198568;198569;198570	198550			23	
IAWTHITIPESLR	0	Unmodified	1535.846	0.84601255	4629	Q9H0E2	TOLLIP	Toll-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	78.021	77.005	3	0.00045338	63442	160511_QHF_FH_JSI9i_3	46.964	35.35			0.98686	0.80307	27.376	3	0	Plateau	0.98686	0.80307	NaN	1	0	Median	0.8389	0.98866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.333	1.3817	NaN	1	0	Median	89210000	41131000	48079000	38160000	19646000	18514000	26170000	10443000	15727000	0	0	0	24881000	11042000	13838000	23484	4629	22242	146913;146914;146915	198571;198572;198573;198574	198573			2	
IAYFTLPK	1	Unmodified	951.54295	0.54295423	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	66.332	65.525	2	0.0061435	57076	160511_QHF_FH_JSI11i_2	63.48	43.843			1.0463	1.1757	11.984	5	0	Median	1.5512	1.3201	NaN	1	0	Median	0.91821	1.1356	NaN	1	0	Median	1.1629	1.1217	19.602	2	0	Median	1.0463	1.1757	NaN	1	0	Median	457440000	222640000	234810000	82250000	33761000	48490000	113220000	64206000	49015000	171080000	83854000	87231000	90889000	40816000	50073000	23485	3904	22243	146916;146917;146918;146919;146920	198575;198576;198577;198578	198577			4	
IAYIHLVADYR	0	Unmodified	1332.719	0.71902112	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.571	59.697	3	0.0046652	32823	160513_QHF_FH_JSI10Kac_6	45.915	31.354			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23486	2661	22244	146921	198579	198579			1	
IAYMLVVHGR	0	Unmodified	1157.6379	0.63793403	4654	Q9H1B5	XYLT2	Xylosyltransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	56.421	47.089	3	4.7733E-07	25781	160513_QHF_FH_JSI10Kac_6	96.034	89.801			1.0117	1.0715	15.236	4	0	Median	1.6059	1.3888	NaN	1	0	Median	0.92674	1.0703	NaN	1	0	Median	1.1044	1.0728	NaN	1	0	Median	0.89491	0.97406	NaN	1	0	Median	114580000	55098000	59481000	27611000	12252000	15359000	53072000	26137000	26935000	21603000	10047000	11556000	12293000	6662200	5630900	23487	4654	22245	146922;146923;146924;146925	198580;198581;198582;198583	198583			3	
IAYQLAVEAESEQK	1	Unmodified	1577.7937	0.7937022	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								4	3	2	3	53.579	52.76	2;3	1.4297E-09	47687	160511_QHF_FH_JSI11i_1	142.08	122.84			0.92357	0.9799	20.512	12	2	Median	1.7629	1.0068	22.315	4	1	Linear	0.75414	0.92239	22.131	3	1	Median	0.92085	0.9363	18.164	2	0	Median	0.81954	0.86559	15.754	3	0	Plateau	597940000	305350000	292590000	152530000	71467000	81060000	193090000	103070000	90025000	97297000	47906000	49391000	155030000	82912000	72116000	23488	1438	22246	146926;146927;146928;146929;146930;146931;146932;146933;146934;146935;146936;146937	198584;198585;198586;198587;198588;198589;198590;198591;198592;198593;198594;198595;198596;198597;198598;198599	198584			15	
IAYTFAR	0	Unmodified	840.44939	0.4493882	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.833	3	2	2							1	1	3	2	36.057	35.654	2	0.023369	31180	160511_QHF_FH_JSI11i_3	55.604	20.711			1.0329	1.01	17.928	7	0	Median	0.99436	0.84722	NaN	1	0	Median	0.83826	0.98447	NaN	1	0	Median	1.0329	1.01	14.968	3	0	Median	1.2266	1.2343	21.24	2	0	Median	2886800000	1303400000	1583300000	371050000	162310000	208740000	47062000	26250000	20812000	1541900000	722130000	819740000	926790000	392760000	534030000	23489	1459	22247	146938;146939;146940;146941;146942;146943;146944	198600;198601;198602;198603	198600			4	
IAYTYSVSFEEDDK	1	Unmodified	1665.741	0.74099793	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.683	61.042	2	0.0003819	55277	160511_QHF_FH_JSI10i_1	95.477	80.105			1.0719	1.1773	13.782	4	1	Median	1.7079	1.4014	NaN	1	1	Median	1.0026	1.2085	NaN	1	0	Median	1.0728	1.0041	NaN	1	0	Median	1.0709	1.1469	NaN	1	0	Median	202380000	81398000	120980000	47377000	12622000	34755000	65063000	29716000	35347000	49779000	22927000	26852000	40160000	16133000	24027000	23490	4316	22248	146945;146946;146947;146948	198604;198605;198606;198607	198606			4	
IAYVSQQPWVFSGTLR	0	Unmodified	1850.9679	0.9679186	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	1	2	2		86.163	82.725	2	5.8582E-05	72694	160511_QHF_FH_JSI10i_3	92.866	78.96			0.97291	0.98171	27.513	5	3	Median	1.7147	1.4711	NaN	1	1	Median	0.88284	1.0309	11.798	2	1	Median	0.86901	0.82268	24.993	2	1	Median	NaN	NaN	NaN	0	0	Median	82038000	46613000	35425000	6991600	2975700	4015900	39660000	24582000	15078000	35386000	19055000	16331000	0	0	0	23491	292	22249	146949;146950;146951;146952;146953	198608;198609;198610;198611;198612;198613	198610			5	
IAYVYPDER	0	Unmodified	1124.5502	0.55022446	3747	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.206	37.923	2	0.0017268	34113	160511_QHF_FH_JSI10i_1	69.825	53.049			1.0558	1.0393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0558	1.0393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128350000	64364000	63984000	0	0	0	0	0	0	128350000	64364000	63984000	0	0	0	23492	3747	22250	146954;146955;146956	198614;198615;198616	198616			3	
ICALDDNVCMAFAGLTADAR	0	Unmodified	2182.9809	0.98094418	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	98.078	97.878	2	5.5844E-09	88748	160511_QHF_FH_JSI12i_1	143.38	129.66			1.2712	1.259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2712	1.259	NaN	1	1	Median	14878000	5280000	9598500	0	0	0	0	0	0	0	0	0	14878000	5280000	9598500	23493	209	22251	146957;146958;146959	198617;198618;198619	198617			3	
ICANHYITPMMELKPNAGSDR	1	Unmodified	2417.129	0.1290054	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							3	4	2		60.886	59.98	3;4	3.7723E-13	50278	160511_QHF_FH_JSI10i_3	118.52	109.43			1.1874	1.0814	21.492	7	2	Median	1.5357	1.3058	6.2668	3	1	Median	0.70575	0.83445	9.1683	2	1	Median	1.0294	0.96548	16.032	2	0	Median	NaN	NaN	NaN	0	0	Median	1015200000	512590000	502650000	390380000	160100000	230290000	402390000	236180000	166210000	222470000	116320000	106150000	0	0	0	23494	1565	22252	146960;146961;146962;146963;146964;146965;146966;146967;146968	198620;198621;198622;198623;198624;198625;198626;198627;198628;198629;198630;198631;198632;198633;198634	198624			15	
ICANHYITPMMELKPNAGSDR	1	Oxidation (M)	2433.1239	0.12392002	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			51.508	49.927	4	1.2999E-05	41786	160511_QHF_FH_JSI10i_3	61.767	47.606			1.0593	1.0234	9.7678	2	0	Median	1.347	1.0965	NaN	1	0	Median	0.83301	0.95506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109750000	51174000	58573000	60133000	26325000	33808000	49613000	24849000	24764000	0	0	0	0	0	0	23495	1565	22252	146969;146970	198635;198636	198635		1229;1230	2	
ICANKYMVK	2	Acetyl (K)	1167.578	0.57803589	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	2	1	51.462	40.896	2	0.023283	23974	160513_QHF_FH_JSI11Kac_4	51.346	34.106			0.4601	0.47853	107.17	4	0	Median	NaN	NaN	NaN	0	0	Median	2.118	2.5222	NaN	1	0	Median	0.27063	0.26802	19.824	2	0	Median	0.6797	0.74264	NaN	1	0	Median	65550000	50537000	15013000	0	0	0	3845900	1229700	2616200	59190000	47711000	11479000	2514100	1596100	917980	23496	1292	22253	146971;146972;146973;146974	198637;198638	198637	1219		2	
ICDDELILIK	1	Unmodified	1230.653	0.65297497	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		71.145	70.845	2	0.008331	64289	160511_QHF_FH_JSI10i_1	60.045	23.285			0.72754	0.77537	21.008	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57804	0.66833	NaN	1	1	Median	0.9157	0.89954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	284460000	134500000	149970000	0	0	0	164190000	92180000	72015000	120270000	42319000	77950000	0	0	0	23497	1132	22254	146975;146976	198639;198640	198640			2	
ICDFENASKPQSIQESTGSIIEVLSK	2	Unmodified	2879.4223	0.42225334	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	91.645	91.388	3	6.3408E-26	81430	160511_QHF_FH_JSI11i_3	138.54	131.51			1.3449	1.1771	24.362	5	0	Median	1.3741	1.1771	NaN	1	0	Median	0.80835	0.97321	NaN	1	0	Median	1.0848	1.0527	41.71	2	0	Median	1.3449	1.3458	NaN	1	0	Median	300710000	163720000	136990000	20745000	9749600	10995000	73951000	37480000	36471000	130220000	76802000	53414000	75799000	39690000	36109000	23498	1747	22255	146977;146978;146979;146980;146981	198641;198642;198643;198644;198645;198646	198643			6	
ICDQWDALGSLTHSR	0	Unmodified	1757.8155	0.81551705	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	67.106	66.357	3	2.9333E-05	57951	160511_QHF_FH_JSI11i_2	97.904	91.741			1.2105	1.2657	42.608	4	0	Median	NaN	NaN	NaN	0	0	Median	0.53136	0.65716	NaN	1	0	Median	1.444	1.4616	NaN	1	0	Median	1.326	1.3816	32.749	2	0	Median	288430000	124010000	164410000	0	0	0	61395000	39910000	21485000	127870000	48562000	79304000	99166000	35541000	63625000	23499	361	22256	146982;146983;146984;146985	198647;198648;198649;198650	198649			4	
ICDQWDNLGALTQK	1	Unmodified	1660.7879	0.78790532	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		71.218	70.927	2	0.0022744	64548	160511_QHF_FH_JSI11i_1	71.548	54.522			0.9209	0.96773	49.17	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1936	1.3701	NaN	1	1	Median	0.71049	0.68353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63140000	34927000	28213000	0	0	0	26737000	14504000	12233000	36403000	20423000	15980000	0	0	0	23500	1021	22257	146986;146987	198651;198652	198651			2	
ICDVYNAVMDVVKK	2	Unmodified	1652.8266	0.82659901	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	81.806	81.36	3	0.00014149	70512	160511_QHF_FH_JSI12i_3	70.26	56.841			1.4731	1.6529	51.09	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94131	1.1517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3052	2.3721	NaN	1	0	Median	97312000	44215000	53097000	0	0	0	32828000	15637000	17191000	0	0	0	64484000	28578000	35906000	23501	5658	22258	146988;146989	198653;198654	198654			2	
ICGDIHGQYTDLLR	0	Unmodified	1659.8039	0.80388973	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	57.16	56.234	2;3	6.2281E-05	48163	160511_QHF_FH_JSI12i_2	83.869	75.692			1.0782	1.1749	16.741	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96168	0.99915	6.7317	2	1	Median	1.2056	1.3246	0.77161	2	0	Median	396860000	195220000	201640000	0	0	0	0	0	0	223260000	117210000	106040000	173600000	78010000	95591000	23502	1981	22259	146990;146991;146992;146993	198655;198656;198657;198658	198655			4	
ICGDIHGQYYDLLR	0	Unmodified	1721.8195	0.8195398	1980;1461	P36873;P62136	PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	62.51	61.595	3	0.00038927	53495	160511_QHF_FH_JSI11i_2	48.823	33.661			1.0516	1.113	39.597	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8642	0.84117	NaN	1	0	Median	1.2796	1.4726	NaN	1	0	Median	148190000	69672000	78518000	0	0	0	0	0	0	81927000	49154000	32773000	66263000	20518000	45745000	23503	1461;1980	22260	146994;146995	198659	198659			1	
ICHQIEYYFGDFNLPR	0	Unmodified	2070.9622	0.96218129	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.62	74.376	3	1.1556E-07	41975	160513_QHF_FH_JSI10Kac_6	112.34	95.653			1.1853	1.1797	29.138	4	0	Median	1.3526	1.1395	NaN	1	0	Median	1.0386	1.2215	NaN	1	0	Median	0.7793	0.7601	NaN	1	0	Median	1.4204	1.5288	NaN	1	0	Median	613610000	290260000	323350000	127740000	56996000	70744000	243630000	115050000	128580000	94653000	54267000	40386000	147590000	63949000	83638000	23504	840	22261	146996;146997;146998;146999	198660;198661;198662;198663;198664	198663			5	
ICIVGPNGVGK	1	Unmodified	1112.6012	0.60121417	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	46.506	46.077	2	0.0014649	39284	160511_QHF_FH_JSI12i_3	63.419	46.643			1.0452	1.0872	8.4497	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94099	1.1686	NaN	1	0	Median	1.0452	1.0056	2.7541	2	0	Median	1.1243	1.1527	NaN	1	0	Median	135540000	67581000	67955000	0	0	0	24221000	9855600	14366000	70016000	38907000	31109000	41298000	18819000	22480000	23505	3634	22262	147000;147001;147002;147003	198665;198666	198666			2	
ICKMNVHIR	1	Acetyl (K)	1211.6267	0.62671741	1248	P24723	PRKCH	Protein kinase C eta type	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			39.438	30.827	3	0.024684	17231	160513_QHF_FH_JSI10Kac_6	39.622	27.459			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23506	1248	22263	147004	198667	198667	1147		1	
ICLDILK	1	Unmodified	873.49937	0.49937486	1937	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		68.579	68.172	2	0.028086	61974	160511_QHF_FH_JSI11i_1	55.604	16.061			1.0027	0.9962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0027	0.9962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26827000	14251000	12576000	0	0	0	0	0	0	26827000	14251000	12576000	0	0	0	23507	1937	22264	147005	198668	198668			1	
ICLEIMQR	0	Unmodified	1061.5362	0.53617107	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.394	58.264	2	0.021912	50064	160511_QHF_FH_JSI12i_3	44.447	24.165			1.4937	1.4684	12.884	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4169	1.3405	NaN	1	1	Median	1.5747	1.6084	NaN	1	0	Median	235490000	96075000	139420000	0	0	0	0	0	0	125120000	54174000	70950000	110370000	41901000	68468000	23508	2147	22265	147006;147007	198669;198670	198670			2	
ICLQPPPTSR	0	Unmodified	1167.607	0.60702783	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	40.566	39.201	2	0.027918	33437	160511_QHF_FH_JSI12i_2	71.692	54.306			1.6644	1.7878	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6644	1.7878	NaN	1	0	Median	25908000	11081000	14826000	0	0	0	0	0	0	0	0	0	25908000	11081000	14826000	23509	1283	22266	147008;147009	198671;198672	198672			1	
ICLTDHFK	1	Unmodified	1032.5063	0.50625115	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	2	2	38.486	37.947	2;3	0.0012492	32562	160511_QHF_FH_JSI11i_2	59.35	46.313			0.96255	1.0987	27.443	6	1	Median	NaN	NaN	NaN	0	0	Median	0.92386	1.0987	8.9295	2	0	Median	0.94215	0.9142	0.71908	2	0	Median	1.592	1.6108	18.57	2	1	Median	497410000	221870000	275540000	0	0	0	87706000	44085000	43622000	157360000	73667000	83691000	252350000	104120000	148230000	23510	5583	22267	147010;147011;147012;147013;147014;147015	198673;198674;198675;198676;198677	198674			5	
ICMAQIAYSGNTSNLSYHLEK	1	Unmodified	2399.125	0.12496588	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		70.036	70.036	3	6.2902E-06	62385	160511_QHF_FH_JSI11i_3	86.539	77.72			0.99096	0.92709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99096	0.92709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38030000	19533000	18497000	0	0	0	0	0	0	38030000	19533000	18497000	0	0	0	23511	752	22268	147016	198678	198678			1	
ICPFTIAIFLK	1	Unmodified	1321.7468	0.74681577	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0		By MS/MS		By matching	7.33	6.13			2						1		2		1	99.732	97.779	2	8.0635E-05	51568	160513_QHF_FH_JSI10Kac_6	94.692	73.821			0.71754	0.84628	42.037	3	0	Median	NaN	NaN	NaN	0	0	Median	0.5893	0.68395	30.117	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2663	1.2813	NaN	1	0	Median	370660000	202490000	168170000	0	0	0	274910000	166180000	108740000	0	0	0	95749000	36312000	59437000	23512	4193	22269	147017;147018;147019	198679;198680;198681	198681			3	
ICPVEFNPNFVAR	0	Unmodified	1561.7711	0.77113304	5324	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	75.128	74.269	2	0.00010772	64181	160511_QHF_FH_JSI12i_2	91.584	42.788			0.90363	1.0453	13.242	4	1	Median	1.2236	1.0407	NaN	1	1	Median	0.85659	1.0498	NaN	1	0	Median	0.79538	0.80564	NaN	1	0	Median	0.95325	1.0582	NaN	1	0	Median	394230000	212940000	181290000	34412000	16906000	17506000	83156000	51782000	31374000	176960000	102010000	74954000	99698000	42241000	57457000	23513	5324	22270	147020;147021;147022;147023;147024	198682;198683;198684;198685;198686;198687;198688	198683			7	
ICSKPVVLPK	2	Unmodified	1139.6737	0.67365083	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	29.836	29.365	3	0.025971	24578	160511_QHF_FH_JSI10i_3	33.229	20.652			1.3709	1.4014	38.728	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78331	0.88033	NaN	1	0	Median	2.0475	1.8994	NaN	1	0	Median	1.3709	1.4014	NaN	1	0	Median	556000000	226660000	329350000	0	0	0	106280000	54471000	51810000	156540000	66233000	90305000	293180000	105950000	187230000	23514	2094	22271	147025;147026;147027	198689;198690;198691	198690			3	
ICSLHSLPPQS	0	Unmodified	1237.6125	0.61250714	799	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	37.777	36.425	2	0.008226	31027	160511_QHF_FH_JSI12i_2	59.8	53.495			0.19379	0.20368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19379	0.20368	NaN	1	1	Median	13531000	11547000	1984300	0	0	0	0	0	0	0	0	0	13531000	11547000	1984300	23515	799	22272	147028;147029	198692;198693	198692			2	
ICSWNVDGLR	0	Unmodified	1218.5815	0.58154136	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		55.202	54.388	2	0.0019904	47783	160511_QHF_FH_JSI9i_2	62.558	42.771			0.86282	1.0527	13.167	3	0	Plateau	1.2643	1.0527	NaN	1	0	Median	0.93246	1.1473	NaN	1	0	Median	0.86282	0.88591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	724740000	391110000	333630000	68969000	32078000	36891000	163370000	86520000	76847000	492400000	272510000	219890000	0	0	0	23516	1294	22273	147030;147031;147032	198694	198694			1	
ICSWSLDMLSHPQDSMELVHK	1	Unmodified	2512.1549	0.1548858	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	88.197	87.985	4	2.3015E-13	76220	160511_QHF_FH_JSI12i_3	121.21	117.99			1.3582	1.2816	6.8455	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0361	1.2816	NaN	1	0	Median	1.2678	1.2305	NaN	1	1	Median	1.3582	1.4063	NaN	1	0	Median	196430000	75611000	120820000	0	0	0	19184000	8450700	10733000	63601000	26590000	37011000	113650000	40570000	73078000	23517	2400	22274	147033;147034;147035	198695;198696	198696			2	
ICYIFHETFGR	0	Unmodified	1441.6813	0.6812554	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	67.91	58.906	2;3	0.00046696	32294	160513_QHF_FH_JSI10Kac_6	69.451	62.08			0.8886	1.0788	11.745	4	0	Linear	1.2642	1.0527	NaN	1	0	Median	0.87251	1.0051	NaN	1	0	Median	1.154	1.1055	NaN	1	0	Median	1.2444	1.3151	NaN	1	0	Median	125150000	60540000	64606000	16641000	9363100	7277400	60396000	29910000	30486000	29769000	10857000	18912000	18340000	10409000	7931500	23518	133	22275	147036;147037;147038;147039;147040	198697;198698;198699;198700;198701;198702	198700			6	
ICYQEVSQCFGVLSSR	0	Unmodified	1931.887	0.88696744	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		77.319	77.319	2	6.1699E-05	69069	160511_QHF_FH_JSI11i_3	103.88	90.453			1.3178	1.2655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3178	1.2655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10045000	3569400	6475600	0	0	0	0	0	0	10045000	3569400	6475600	0	0	0	23519	2734	22276	147041;147042	198703;198704	198703			2	
IDAAEGPSDIPD	0	Unmodified	1198.5354	0.53536225	1547	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	47.782	47.19	2	0.00026786	41864	160511_QHF_FH_JSI9i_1	76.221	71.77			1.0212	1.0191	6.4968	6	5	Median	1.2145	0.99259	NaN	1	0	Median	0.84266	0.98427	12.417	2	2	Median	1.053	1.0349	4.6602	2	2	Median	1.0241	1.0371	NaN	1	1	Median	694500000	345160000	349340000	127660000	56901000	70762000	213330000	122810000	90521000	238260000	106390000	131880000	115240000	59061000	56183000	23520	1547	22277	147043;147044;147045;147046;147047;147048	198705;198706;198707;198708;198709;198710;198711	198710			7	
IDAAQNWLADPNGGPEGEEQIR	0	Unmodified	2379.1091	0.10911612	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.65	69.392	2	0.0072728	62871	160511_QHF_FH_JSI10i_1	43.592	34.31			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23521	1139	22278	147049	198712	198712			1	
IDAAYFETSK	1	Unmodified	1143.5448	0.54480473	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.929	46.431	2	0.00024811	42263	160511_QHF_FH_JSI12i_1	91.584	47.235			1.133	1.1084	28.624	3	3	Median	NaN	NaN	NaN	0	0	Median	1.4772	1.7978	NaN	1	1	Median	1.133	1.1084	NaN	1	1	Median	1.0626	1.0827	NaN	1	1	Median	207350000	84930000	122420000	0	0	0	66307000	23258000	43049000	85038000	33965000	51072000	56005000	27706000	28298000	23522	4018	22279	147050;147051;147052	198713;198714;198715	198714			3	
IDAMHGVVGPYVK	1	Unmodified	1384.7173	0.71730656	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	52.464	51.585	2;3	7.0846E-05	44525	160511_QHF_FH_JSI11i_2	55.899	49.995			0.77457	0.94661	19.645	3	2	Plateau	0.77457	0.6393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82762	0.85171	14.939	2	1	Median	NaN	NaN	NaN	0	0	Median	537720000	298600000	239120000	32797000	17824000	14973000	0	0	0	504920000	280780000	224140000	0	0	0	23523	1460	22280	147053;147054;147055;147056;147057;147058	198716;198717;198718;198719;198720;198721;198722	198720			7	
IDASELSFPFHESILK	1	Unmodified	1831.9356	0.93561541	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							4	4	2	3	94.06	93.572	2;3	4.899E-07	82221	160511_QHF_FH_JSI9i_2	88.441	64.098			1.085	1.106	11.129	11	1	Median	1.3036	1.106	10.416	3	1	Median	0.90454	1.1093	10.939	3	0	Median	0.96773	0.9777	18.331	2	0	Median	0.98506	1.0791	5.9554	3	0	Plateau	897340000	448880000	448470000	165670000	71318000	94351000	225090000	122290000	102800000	250050000	124250000	125800000	256530000	131020000	125510000	23524	1526	22281	147059;147060;147061;147062;147063;147064;147065;147066;147067;147068;147069;147070;147071	198723;198724;198725;198726;198727;198728;198729;198730;198731;198732;198733;198734;198735;198736;198737;198738;198739;198740;198741;198742;198743;198744;198745;198746;198747;198748;198749	198737			27	
IDASKNEEDEGHSNSSPR	1	Unmodified	1970.8566	0.85658982	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		8.3555	8.0385	3	5.1666E-07	5989	160511_QHF_FH_JSI10i_2	103.66	86.582			0.70327	0.85005	39.449	3	1	Median	1.2857	1.0713	NaN	1	0	Median	0.70327	0.85005	NaN	1	0	Median	0.52129	0.49657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111150000	68867000	42286000	35301000	17821000	17480000	49244000	31228000	18016000	26608000	19817000	6790300	0	0	0	23525	2488	22282	147072;147073;147074	198750;198751;198752;198753	198753			4	
IDASQTCK	1	Unmodified	921.42258	0.4225811	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.3896	8.0402	2	0.034346	5891	160511_QHF_FH_JSI12i_1	45.68	6.4617			1.0817	1.0266	17.908	4	0	Linear	1.9437	1.5821	NaN	1	0	Median	1.0108	1.1709	NaN	1	0	Median	1.0942	1.0802	NaN	1	0	Median	1.0694	1.0924	NaN	1	0	Median	411560000	186870000	224690000	69481000	32233000	37248000	100760000	50271000	50488000	128910000	57920000	70993000	112410000	46447000	65959000	23526	2842	22283	147075;147076;147077;147078	198754;198755	198755			2	
IDATSASVLASR	0	Unmodified	1189.6303	0.63026569	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	4	1				1				2	1	2	1	39.488	36.001	2	0.00011904	38387	160511_QHF_FH_JSI10i_1	86.344	63.564			0.95834	0.90463	15.482	5	0	Median	0.95834	0.78225	NaN	1	0	Median	0.75624	0.89834	NaN	1	0	Median	1.0158	1.0109	15.711	2	0	Median	1.0391	1.1046	NaN	1	0	Median	3219300000	1506200000	1713100000	707610000	372180000	335430000	738990000	365200000	373790000	920720000	404530000	516190000	852000000	364340000	487670000	23527	1034	22284	147079;147080;147081;147082;147083;147084	198756;198757;198758;198759;198760;198761;198762;198763	198760			8	
IDATSASVLASRFDVSGYPTIK	1	Unmodified	2297.1903	0.19032655	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	87.765	87.633	3	0.022424	76029	160511_QHF_FH_JSI12i_3	27.904	18.72			0.50217	0.49992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50217	0.49992	NaN	1	0	Median	60716000	39395000	21321000	0	0	0	0	0	0	0	0	0	60716000	39395000	21321000	23528	1034	22285	147085	198764	198764			1	
IDAVAWNTTPYQLAR	0	Unmodified	1717.8788	0.87876924	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	1	2	76.583	75.657	2	1.1247E-29	66503	160511_QHF_FH_JSI11i_2	186.81	139.51			1.1365	1.2702	15.06	5	3	Median	1.4414	1.2702	NaN	1	1	Median	1.1365	1.399	NaN	1	1	Median	1.3244	1.3242	NaN	1	0	Median	0.93402	1.028	8.0026	2	1	Median	183540000	83066000	100470000	28067000	14966000	13101000	27433000	10700000	16732000	66533000	26534000	39999000	61503000	30866000	30637000	23529	4495	22286	147086;147087;147088;147089;147090;147091;147092	198765;198766;198767;198768;198769;198770;198771;198772	198770			8	
IDAVNAETIR	0	Unmodified	1100.5826	0.58258722	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	4.86	5.79	4	1					2			1	3	2	1	37.778	34.394	2	0.0050484	31062	160511_QHF_FH_JSI11i_1	62.823	23.276			1.0044	0.98263	15.075	7	0	Median	1.1877	0.98263	NaN	1	0	Median	0.78802	0.96595	18.043	3	0	Plateau	1.0115	0.98659	1.4065	2	0	Median	0.76601	0.81893	NaN	1	0	Median	998940000	493440000	505510000	159220000	48379000	110840000	312360000	172190000	140160000	266150000	126910000	139240000	261220000	145960000	115270000	23530	527	22287	147093;147094;147095;147096;147097;147098;147099	198773;198774;198775;198776;198777	198774			5	
IDCDNLEQYFIQQGGGPDK	1	Unmodified	2195.9793	0.9793475	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		80.433	80.084	3	5.795E-05	72992	160511_QHF_FH_JSI11i_1	83.213	75.026			1.1906	1.148	28.235	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.148	28.235	2	2	Median	NaN	NaN	NaN	0	0	Median	68294000	29956000	38338000	0	0	0	0	0	0	68294000	29956000	38338000	0	0	0	23531	3828	22288	147100;147101	198778;198779	198779			2	
IDDFKAEDFQIEGYNPHPTIK	2	Unmodified	2476.1911	0.19105483	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	1		By matching		By MS/MS	2.5	0.5		1	1								1		1	68.957	68.404	4	0.0097038	59228	160511_QHF_FH_JSI12i_3	31.176	20.338			0.92841	1.0308	15.536	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75444	0.92358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1425	1.1505	NaN	1	0	Median	114440000	54888000	59549000	0	0	0	33003000	17253000	15749000	0	0	0	81434000	37635000	43799000	23532	815	22289	147102;147103	198780	198780			1	
IDDFPNELEK	1	Unmodified	1218.5768	0.57683314	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				52.677	51.477	2	0.048415	45758	160511_QHF_FH_JSI9i_1	43.512	30.135			3.5492	2.9663	NaN	1	1	Median	3.5492	2.9663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147390000	38590000	108800000	147390000	38590000	108800000	0	0	0	0	0	0	0	0	0	23533	4976	22290	147104	198781	198781			1	
IDDIADGAVKPPPNK	2	Unmodified	1548.8148	0.814772	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				37.566	36.343	3	0.00015156	31954	160511_QHF_FH_JSI9i_1	76.759	62.729			0.98116	0.80816	NaN	1	0	Median	0.98116	0.80816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93454000	38432000	55021000	93454000	38432000	55021000	0	0	0	0	0	0	0	0	0	23534	3277	22291	147105	198782	198782			1	
IDDIRKPGESEE	1	Unmodified	1386.6627	0.66268803	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	19.028	18.476	2;3	0.00080974	15023	160511_QHF_FH_JSI12i_2	68.44	52.685			0.95732	1.0356	11.416	11	0	Median	1.2472	1.0476	1.634	2	0	Median	0.81756	0.99053	0.67253	2	0	Median	1.0821	1.1269	18.678	3	0	Median	0.93046	0.98607	13.479	4	0	Median	4539200000	2189900000	2349300000	762090000	309470000	452610000	968170000	481390000	486780000	1497000000	709460000	787540000	1311900000	689560000	622360000	23535	1630	22292	147106;147107;147108;147109;147110;147111;147112;147113;147114;147115;147116	198783;198784;198785;198786;198787;198788;198789;198790;198791;198792;198793	198784			11	
IDDIVSGHK	1	Unmodified	982.50836	0.50835964	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	2.87	6	8	3				1			4	5	5	4	18.298	17.204	2;3	3.5787E-05	13797	160511_QHF_FH_JSI11i_2	99.802	42.243			0.97843	1.1041	19.337	15	1	Median	1.3838	1.1389	11.644	4	0	Median	0.92876	1.1119	6.8446	4	0	Median	0.8095	0.83472	9.9421	4	0	Median	0.97843	1.1041	20.184	3	1	Plateau	5227600000	2689700000	2538000000	1038900000	463360000	575570000	1400400000	712150000	688210000	1708000000	974860000	733170000	1080300000	539280000	541030000	23536	1655	22293	147117;147118;147119;147120;147121;147122;147123;147124;147125;147126;147127;147128;147129;147130;147131;147132;147133;147134	198794;198795;198796;198797;198798;198799;198800;198801;198802;198803;198804;198805;198806;198807;198808;198809;198810;198811;198812;198813;198814;198815;198816;198817;198818;198819	198811			26	
IDDIVSGHKK	2	Acetyl (K)	1152.6139	0.61388734	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	32.843	23.674	3	0.0065315	14875	160513_QHF_FH_JSI11Kac_4	78.513	62.259			0.46764	0.51921	70.596	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0193	1.22	NaN	1	0	Median	0.30923	0.30063	NaN	1	0	Median	0.46764	0.51921	NaN	1	0	Median	79951000	53522000	26430000	0	0	0	18328000	8126600	10201000	49372000	37221000	12151000	12251000	8173600	4077700	23537	1655	22294	147135;147136;147137	198820;198821;198822;198823;198824	198822	1676		5	
IDDIVSGHKK	2	Unmodified	1110.6033	0.60332266	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.499	11.588	3	0.0093495	8813	160511_QHF_FH_JSI12i_3	38.021	20.157			0.84729	0.85541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84729	0.85541	NaN	1	0	Median	79814000	31700000	48115000	0	0	0	0	0	0	0	0	0	79814000	31700000	48115000	23538	1655	22294	147138	198825;198826	198825			2	
IDDKPVK	2	Unmodified	813.45962	0.45961853	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	8.0343	7.5093	3	0.027288	5338	160511_QHF_FH_JSI9i_2	37.558	22.119			0.98104	0.97623	50.746	3	1	Plateau	1.7485	1.4944	NaN	1	0	Median	2.124	2.6263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84498	0.9539	NaN	1	0	Median	615910000	278060000	337850000	175540000	64431000	111110000	181070000	86550000	94518000	0	0	0	259300000	127080000	132220000	23539	2596	22295	147139;147140;147141	198827;198828	198827			2	
IDDLIKLHPESK	2	Acetyl (K)	1448.7875	0.78749461	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.471							2	1			1	1	1	64.749	53.969	3	0.00191	29329	160513_QHF_FH_JSI10Kac_4	56.648	45.034			0.50827	0.55022	126.04	3	0	Median	NaN	NaN	NaN	0	0	Median	2.562	3.0551	NaN	1	0	Median	0.26709	0.26162	NaN	1	0	Median	0.50827	0.55022	NaN	1	0	Median	41552000	21816000	19737000	0	0	0	22694000	7040500	15653000	11313000	9437700	1874900	7545800	5337500	2208300	23540	1132	22296	147142;147143;147144	198829;198830;198831;198832	198829	984		4	
IDDLQMVLNQTEDHR	0	Unmodified	1825.8629	0.86286118	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	67.294	66.394	3	0.0030352	57990	160511_QHF_FH_JSI11i_2	43.904	39.423			0.80669	0.87414	22.621	4	0	Median	1.3656	1.1919	NaN	1	0	Median	0.57469	0.68923	NaN	1	0	Median	0.80956	0.84557	NaN	1	0	Median	0.80383	0.90367	NaN	1	0	Median	196980000	101620000	95359000	27294000	10017000	17277000	42613000	20896000	21716000	77575000	43387000	34188000	49499000	27321000	22178000	23541	3926	22297	147145;147146;147147;147148	198833	198833			1	
IDDMMFVLQGQWMR	0	Unmodified	1768.8099	0.80990309	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.732	87.011	2	7.0231E-11	49849	160513_QHF_FH_JSI10Kac_6	125.22	111.31			1.0855	1.3055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0855	1.3055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149280000	73689000	75590000	0	0	0	149280000	73689000	75590000	0	0	0	0	0	0	23542	1379	22298	147149	198834	198834			1	
IDDMTAAPMDVR	0	Unmodified	1333.6006	0.60062182	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.643	47.963	2	1.0282E-07	43420	160511_QHF_FH_JSI11i_1	136.96	132.17			0.9947	1.0028	7.7024	4	0	Median	1.1469	0.93341	NaN	1	0	Median	0.92318	1.1102	NaN	1	0	Median	1.0707	1.039	NaN	1	0	Median	0.92411	0.96777	NaN	1	0	Median	1076300000	523120000	553190000	304000000	132320000	171680000	267890000	145100000	122790000	271150000	129860000	141280000	233270000	115840000	117430000	23543	1086	22299	147150;147151;147152;147153	198835;198836;198837;198838;198839;198840;198841	198836			7	
IDDPTDSKPEDWDKPEHIPDPDAK	3	Unmodified	2759.2562	0.25623386	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	2.44	0.685	2	6	10							1	2	7	8	52.901	52.422	3;4;5	1.3178E-09	45549	160511_QHF_FH_JSI11i_3	104.53	85.807			0.96479	1.0322	19.559	18	5	Median	2.0107	1.7004	NaN	1	0	Median	1.0121	1.2105	24.42	2	0	Median	1.1047	1.0428	16.059	7	3	Median	0.92833	0.98248	12.038	8	2	Median	2885700000	1482900000	1402700000	29264000	16627000	12638000	215390000	112650000	102740000	1125400000	562600000	562780000	1515600000	791070000	724550000	23544	1297	22300	147154;147155;147156;147157;147158;147159;147160;147161;147162;147163;147164;147165;147166;147167;147168;147169;147170;147171	198842;198843;198844;198845;198846;198847;198848;198849;198850;198851;198852;198853;198854;198855;198856;198857;198858;198859;198860;198861;198862;198863;198864;198865	198847			21	
IDDPTDSKPEDWDKPEHIPDPDAK	3	Acetyl (K)	2801.2668	0.26679855	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15.8	0.433								1	3		1	3		68.655	59.198	3;4	0.00020527	31923	160513_QHF_FH_JSI11Kac_6	57.293	54.078			0.23983	0.22994	14.682	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23983	0.22994	14.682	3	0	Plateau	NaN	NaN	NaN	0	0	Median	352360000	275600000	76762000	0	0	0	11420000	0	11420000	340940000	275600000	65342000	0	0	0	23545	1297	22300	147172;147173;147174;147175	198866;198867;198868;198869;198870	198868	1223		3	
IDDVVNTR	0	Unmodified	930.47706	0.47705951	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	23.072	19.553	2	0.00045611	17193	160511_QHF_FH_JSI12i_1	107.66	78.091			1.0014	1.0342	4.6716	7	0	Median	1.1311	0.94488	NaN	1	0	Median	0.84611	0.99429	0.93756	2	0	Median	1.0762	1.0602	0.73335	2	0	Median	0.97183	1.0539	2.6682	2	0	Median	6763500000	3307400000	3456100000	1708200000	788490000	919730000	1372100000	656550000	715590000	1973400000	1015600000	957750000	1709700000	846740000	863000000	23546	1722	22301	147176;147177;147178;147179;147180;147181;147182	198871;198872;198873;198874;198875;198876;198877;198878;198879;198880	198873			10	
IDEAESLNDEELEEK	1	Unmodified	1761.7792	0.77923393	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.686	46.008	2	4.2235E-53	41322	160511_QHF_FH_JSI10i_1	225.13	199.69			1.1175	1.0627	14.892	4	0	Median	1.1675	0.94044	NaN	1	0	Median	0.85957	1.0089	NaN	1	0	Median	1.3913	1.3249	NaN	1	0	Median	1.0696	1.1193	NaN	1	0	Median	1045200000	524070000	521150000	238560000	97741000	140820000	252420000	148570000	103850000	318800000	157530000	161270000	235440000	120220000	115220000	23547	403	22302	147183;147184;147185;147186	198881;198882;198883;198884;198885;198886;198887;198888	198886			8	
IDEDGKK	2	Unmodified	803.4025	0.40249759	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	4.5711	4.3444	2	0.01935	2083	160511_QHF_FH_JSI11i_1	58.981	17.479			0.97604	0.95866	65.757	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3322	1.6108	NaN	1	1	Median	0.97604	0.95866	NaN	1	0	Median	0.40977	0.43638	NaN	1	1	Median	853790000	486990000	366800000	0	0	0	271360000	128990000	142360000	244160000	149240000	94920000	338270000	208760000	129520000	23548	570	22303	147187;147188;147189;147190	198889;198890;198891;198892	198889			4	
IDEELVTNSGK	1	Unmodified	1203.5983	0.59829686	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		32.08	31.793	2	0.010408	28378	160511_QHF_FH_JSI10i_1	57.149	38.17			0.83525	0.9071	40.617	2	2	Median	NaN	NaN	NaN	0	0	Median	0.99462	1.2089	NaN	1	1	Median	0.70141	0.68065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142300000	77263000	65041000	0	0	0	66408000	29326000	37082000	75897000	47937000	27960000	0	0	0	23549	4976	22304	147191;147192	198893;198894	198894			2	
IDEFPIR	0	Unmodified	888.47052	0.47051757	483	O75151	PHF2	Lysine-specific demethylase PHF2	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		3										2	1	14.454	14.022	3	0.042141	11102	160511_QHF_FH_JSI11i_2	21.3	1.6637			1.1735	1.1752	9.1592	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1735	1.1752	0	2	0	Median	0.89086	1.0028	NaN	1	0	Median	305220000	137520000	167690000	0	0	0	0	0	0	214050000	97549000	116500000	91163000	39976000	51187000	23550	483	22305	147193;147194;147195	198895	198895			1	
IDEHHFVAVALR	0	Unmodified	1405.7466	0.74663285	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	2	2	5	4	54.15	48.38	3;4	1.0573E-08	25671	160513_QHF_FH_JSI9Kac_6	95.018	72.101			1.2546	1.1713	21.363	13	2	Median	1.1547	0.96706	9.4368	2	0	Median	0.7998	0.94865	1.7702	2	0	Median	1.3559	1.238	10.638	5	2	Median	1.2478	1.2665	26.258	4	0	Median	414980000	194650000	220330000	33609000	16568000	17041000	42784000	24129000	18655000	170260000	77168000	93092000	168330000	76786000	91545000	23551	4959	22306	147196;147197;147198;147199;147200;147201;147202;147203;147204;147205;147206;147207;147208	198896;198897;198898;198899;198900;198901;198902;198903;198904;198905;198906;198907;198908;198909;198910;198911	198902			15	
IDEKPETFESLVAK	2	Unmodified	1604.8298	0.82975336	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	60.585	59.262	3	0.061752	50770	160511_QHF_FH_JSI12i_2	25.319	14.532			0.90512	0.96939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90512	0.96939	NaN	1	0	Median	41918000	24597000	17321000	0	0	0	0	0	0	0	0	0	41918000	24597000	17321000	23552	4505	22307	147209	198912	198912			1	
IDELEPR	0	Unmodified	870.4447	0.44469675	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.8	22.266	2	0.019071	19195	160511_QHF_FH_JSI11i_1	58.917	15.917			0.93411	0.97079	7.7911	4	0	Median	1.263	1.0291	NaN	1	0	Median	0.80364	0.92952	NaN	1	0	Median	1.0494	1.0139	NaN	1	0	Median	0.83152	0.87145	NaN	1	0	Median	697880000	345100000	352780000	172830000	77663000	95168000	165430000	92572000	72859000	159590000	70783000	88806000	200030000	104080000	95944000	23553	2569	22308	147210;147211;147212;147213	198913;198914;198915;198916;198917;198918;198919	198913			7	
IDEMPEAAVK	1	Oxidation (M)	1117.5325	0.53252548	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	1	2	3	27.455	24.837	2	0.00062065	31385	160511_QHF_FH_JSI9i_1	75.378	51.223			0.93103	0.91781	15.046	8	0	Median	0.91647	0.74792	11.183	2	0	Median	0.74017	0.85815	NaN	1	0	Median	1.0009	0.97878	14.593	2	0	Median	0.92853	0.9658	6.6007	3	0	Plateau	978690000	468590000	510100000	489420000	215440000	273980000	101640000	54900000	46743000	95919000	52647000	43272000	291710000	145610000	146100000	23554	1758	22309	147214;147215;147216;147217;147218;147219;147220;147221	198920;198921;198922;198923;198924;198925;198926;198927	198926		1436	8	
IDEMPEAAVK	1	Unmodified	1101.5376	0.53761086	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.43	4	1	1		2	2				1	4	3	2	40.226	35.821	2	5.2838E-06	32135	160511_QHF_FH_JSI11i_1	108.98	92.775			1.0145	1.0358	8.2717	9	0	Median	1.3282	1.1152	NaN	1	0	Median	0.83493	1.0028	4.602	3	0	Plateau	1.0345	0.99769	3.3046	3	0	Median	1.0624	1.15	15.919	2	0	Median	8808300000	3864000000	4944300000	1846600000	732720000	1113900000	2283600000	1025600000	1258000000	2421200000	1014200000	1407000000	2256800000	1091500000	1165400000	23555	1758	22309	147222;147223;147224;147225;147226;147227;147228;147229;147230;147231	198928;198929;198930;198931;198932;198933;198934;198935;198936;198937;198938;198939;198940;198941;198942;198943;198944;198945;198946	198930			19	
IDEPLEGSEDR	0	Unmodified	1258.5677	0.56772501	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				2	1	1	1	26.6	22.566	2	2.5889E-09	24573	160511_QHF_FH_JSI9i_1	128.91	125.33			0.97379	0.93938	11.235	5	0	Median	1.259	1.0325	11.947	2	0	Median	0.75771	0.87952	NaN	1	0	Median	0.97379	0.93938	NaN	1	0	Median	0.7864	0.83454	NaN	1	0	Median	3520800000	1865400000	1655400000	814210000	379140000	435070000	1070100000	581480000	488580000	919210000	494470000	424740000	717310000	410320000	306990000	23556	1975	22310	147232;147233;147234;147235;147236	198947;198948;198949;198950;198951;198952;198953;198954;198955	198955			9	
IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK	1	Unmodified	3828.9381	0.93814119	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.784	9	6	4							4	4	6	5	101.03	100.93	3;4	0	86702	160511_QHF_FH_JSI12i_2	379.76	369.7			1.1988	1.0828	11.156	18	2	Median	1.2742	1.0367	8.1419	4	0	Median	0.89954	1.0475	2.5956	3	0	Median	1.2212	1.1936	11.424	6	2	Median	0.99806	1.1013	12.826	5	0	Median	11997000000	5803500000	6193900000	1843100000	754270000	1088800000	2924600000	1564600000	1359900000	2640400000	1213900000	1426600000	4589400000	2270800000	2318600000	23557	1975	22311	147237;147238;147239;147240;147241;147242;147243;147244;147245;147246;147247;147248;147249;147250;147251;147252;147253;147254;147255	198956;198957;198958;198959;198960;198961;198962;198963;198964;198965;198966;198967;198968;198969;198970;198971;198972;198973;198974;198975;198976;198977;198978;198979;198980	198961			25	
IDESSLTGESDHVK	1	Unmodified	1515.7053	0.70528113	1168;1239	P23634;P20020	ATP2B4;ATP2B1	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	33.571	32.966	2;3	3.2975E-05	29424	160511_QHF_FH_JSI10i_1	98.253	86.813			0.75683	0.72994	7.473	4	0	Median	0.83532	0.69414	NaN	1	0	Median	0.64777	0.75505	NaN	1	0	Median	0.85634	0.81791	NaN	1	0	Median	0.68572	0.70567	NaN	1	0	Median	495120000	268320000	226800000	87655000	43542000	44113000	155550000	101780000	53769000	153090000	67861000	85226000	98825000	55132000	43693000	23558	1239;1168	22312	147256;147257;147258;147259;147260	198981;198982;198983;198984;198985;198986;198987	198985			7	
IDESSLTGESDHVKK	2	Unmodified	1643.8002	0.80024414	1168;1239	P23634;P20020	ATP2B4;ATP2B1	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	1	3	28.499	27.766	3;4	0.00019035	23197	160511_QHF_FH_JSI12i_3	82.529	54.881			1.1466	1.0968	33.442	6	5	Median	1.2398	1.0455	18.172	2	2	Median	1.2019	1.4435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92738	1.0119	45.887	3	2	Median	477140000	236520000	240620000	167650000	74244000	93404000	74357000	40174000	34183000	0	0	0	235140000	122100000	113030000	23559	1239;1168	22313	147261;147262;147263;147264;147265;147266;147267	198988;198989;198990;198991;198992;198993;198994	198993			6	
IDEYDYSKPIQGQQK	2	Acetyl (K)	1852.8843	0.88430813	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		56.485	46.896	3	0.042468	25231	160513_QHF_FH_JSI11Kac_3	36.022	24.76			0.12661	0.13263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12661	0.13263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	951870	910540	41330	0	0	0	0	0	0	951870	910540	41330	0	0	0	23560	1367	22314	147268	198995	198995	1300		1	
IDFADTVTK	1	Unmodified	1008.5128	0.51277632	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.224	47.542	2	0.00072092	42399	160511_QHF_FH_JSI9i_1	75.378	29.698			1.2474	1.2522	11.37	4	0	Median	1.5503	1.2629	NaN	1	0	Median	1.0486	1.2415	NaN	1	0	Median	1.1417	1.1033	NaN	1	0	Median	1.3629	1.4561	NaN	1	0	Median	861850000	389000000	472850000	172900000	70404000	102500000	217110000	102160000	114950000	212090000	109530000	102560000	259750000	106900000	152850000	23561	2332	22315	147269;147270;147271;147272	198996;198997;198998;198999;199000	199000			5	
IDFDSVSSIMASSQ	0	Unmodified	1485.6657	0.6657245	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	93.324	92.948	2	3.1397E-30	84443	160511_QHF_FH_JSI10i_1	194.06	168.67			0.74076	0.9868	12.085	4	0	Linear	1.2903	1.0554	NaN	1	0	Median	0.7921	0.92264	NaN	1	0	Median	1.1353	1.1169	NaN	1	0	Median	0.83134	0.85816	NaN	1	0	Median	493230000	237560000	255680000	101180000	44893000	56292000	148770000	79317000	69456000	116270000	53964000	62302000	127010000	59382000	67628000	23562	5247	22316	147273;147274;147275;147276	199001;199002;199003;199004;199005;199006;199007	199006			7	
IDFGEAAR	0	Unmodified	877.42938	0.42938104	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.43	0.495	4	3								2	2	2	1	33.356	32.669	2	0.034099	28623	160511_QHF_FH_JSI10i_2	40.778	23.413			1.0362	1.0502	12.028	7	0	Median	1.0439	0.86997	3.6284	2	0	Median	0.83597	0.99027	9.5162	2	0	Median	1.1514	1.1416	0.19996	2	0	Median	0.99947	1.0502	NaN	1	0	Median	1463200000	726860000	736380000	265940000	128620000	137320000	509190000	292310000	216880000	565220000	251360000	313860000	122900000	54580000	68321000	23563	915	22317	147277;147278;147279;147280;147281;147282;147283	199008;199009	199009			2	
IDFGTHISGR	0	Unmodified	1101.5567	0.55670682	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	7	6.38		3	3						3	2	1	4	2	39.383	35.941	3	5.8182E-06	31435	160511_QHF_FH_JSI11i_3	86.276	77.832			0.98912	1.0178	28.353	9	1	Median	1.1587	0.99091	12.003	2	0	Median	0.98912	1.231	NaN	1	0	Median	0.9664	0.9515	43.575	4	1	Median	0.90806	0.96062	9.9403	2	0	Median	2065400000	1009800000	1055600000	78050000	33970000	44080000	98550000	54855000	43696000	1101200000	502550000	598630000	787640000	418410000	369230000	23564	1712	22318	147284;147285;147286;147287;147288;147289;147290;147291;147292	199010;199011;199012;199013;199014;199015	199010			5	
IDFSKLTSLNVK	2	Acetyl (K)	1405.7817	0.78168095	1281;724	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	1	0	0	1			By MS/MS		15	0								1				1		86.814	76.314	2	0.0041568	40053	160513_QHF_FH_JSI11Kac_5	66.595	47.353			0.31696	0.31078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31696	0.31078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9623300	7039400	2583900	0	0	0	0	0	0	9623300	7039400	2583900	0	0	0	23565	1281;724	22319	147293	199016	199016	358;359		1	
IDFSSIAVPGTSSPR	0	Unmodified	1532.7835	0.78347187	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									1	2	3	74.784	74.361	2	1.7902E-05	64142	160511_QHF_FH_JSI12i_2	84.718	59.863			0.53712	0.68813	14.582	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.45693	0.54404	NaN	1	1	Median	0.64147	0.62917	19.684	2	0	Median	0.5069	0.53118	NaN	1	1	Median	147700000	88374000	59322000	0	0	0	36757000	25547000	11211000	89805000	46990000	42815000	21134000	15838000	5296600	23566	2968	22320	147294;147295;147296;147297;147298;147299	199017;199018;199019;199020;199021;199022	199018			6	
IDFVGELNDK	1	Unmodified	1148.5714	0.57135383	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	61.722	61.023	2	0.00093461	53522	160511_QHF_FH_JSI9i_2	68.893	29.871			0.89542	0.8158	12.279	7	2	Median	0.99825	0.83902	12.286	2	1	Median	0.67541	0.81506	0.129	2	0	Median	0.90928	0.898	18.7	2	1	Median	0.95799	1.0264	NaN	1	0	Median	1280200000	669170000	611040000	256240000	121710000	134530000	341230000	197690000	143540000	404960000	218540000	186420000	277780000	131230000	146560000	23567	1862	22321	147300;147301;147302;147303;147304;147305;147306	199023;199024;199025;199026;199027;199028;199029	199027			7	
IDFYFDENPYFENK	1	Unmodified	1839.7992	0.79918151	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.777	9	8	5							6	5	6	5	92.08	91.609	2;3	3.1901E-98	83114	160511_QHF_FH_JSI10i_1	288.35	277.14			0.9253	0.97778	21.843	20	3	Median	1.0599	0.89207	37.416	5	1	Median	0.82734	0.98977	4.091	5	0	Median	0.90023	0.88014	11.602	6	2	Median	0.97837	1.0947	6.7447	4	0	Median	2220600000	1134100000	1086500000	292330000	141180000	151150000	621010000	353830000	267180000	770750000	378340000	392410000	536560000	260750000	275810000	23568	2164	22322	147307;147308;147309;147310;147311;147312;147313;147314;147315;147316;147317;147318;147319;147320;147321;147322;147323;147324;147325;147326;147327;147328	199030;199031;199032;199033;199034;199035;199036;199037;199038;199039;199040;199041;199042;199043;199044;199045;199046;199047;199048;199049;199050;199051;199052;199053;199054;199055;199056;199057;199058;199059;199060;199061;199062;199063;199064;199065;199066;199067;199068;199069;199070;199071;199072;199073;199074	199051			45	
IDGALHR	0	Unmodified	780.42424	0.42423608	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		9.2061	9.2061	2	0.019238	6855	160511_QHF_FH_JSI11i_3	61.494	30.436			1.54	1.42	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.54	1.42	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140060000	58499000	81559000	0	0	0	0	0	0	140060000	58499000	81559000	0	0	0	23569	3217	22323	147329	199075	199075			1	
IDGATQSSPAEPK	1	Unmodified	1299.6307	0.63065962	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	17.325	15.531	2	3.2134E-07	13217	160511_QHF_FH_JSI12i_1	136.96	108.75			1.0485	1.0235	11.886	5	0	Median	1.0768	0.88846	NaN	1	0	Median	0.8724	1.0235	NaN	1	0	Median	1.1146	1.0671	17.822	2	0	Median	1.0485	1.0616	NaN	1	0	Median	592420000	301860000	290560000	157440000	75382000	82054000	158900000	86168000	72729000	144500000	75735000	68769000	131580000	64574000	67010000	23570	2804	22324	147330;147331;147332;147333;147334	199076;199077;199078;199079;199080;199081;199082;199083;199084	199079			9	
IDGNLDYRDHEK	1	Unmodified	1473.6848	0.68482046	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	19.748	19.761	3	0.0056205	16072	160511_QHF_FH_JSI12i_3	44.426	36.702			0.9495	0.97118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9495	0.97118	NaN	1	0	Median	67632000	38368000	29264000	0	0	0	0	0	0	0	0	0	67632000	38368000	29264000	23571	3115	22325	147335	199085	199085			1	
IDGNLVVRPYTPISSDDDK	1	Unmodified	2103.0484	0.048413341	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	4	6	6							5	3	4	4	61.892	61.176	2;3	7.4633E-08	52954	160511_QHF_FH_JSI12i_3	101.38	85.44			0.93057	0.95804	18.862	15	2	Median	1.131	0.95197	26.058	4	1	Median	0.82755	0.96114	9.4259	3	0	Median	0.90739	0.88626	12.652	4	0	Median	0.91797	0.97518	21.944	4	1	Median	3596500000	1778900000	1817600000	465390000	202740000	262640000	699170000	373020000	326160000	1480000000	713790000	766210000	951920000	489380000	462550000	23572	764	22326	147336;147337;147338;147339;147340;147341;147342;147343;147344;147345;147346;147347;147348;147349;147350;147351	199086;199087;199088;199089;199090;199091;199092;199093;199094;199095;199096;199097;199098;199099;199100;199101;199102;199103;199104;199105;199106;199107;199108;199109;199110;199111;199112;199113;199114;199115;199116;199117;199118;199119;199120;199121;199122;199123	199122			38	
IDGQDISQVTQASLR	0	Unmodified	1629.8322	0.83221298	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	61.024	60.314	2	0.00037426	54744	160511_QHF_FH_JSI12i_1	70.622	46.771			0.95678	0.90621	13.656	3	3	Median	1.0818	0.90621	NaN	1	1	Median	0.95678	1.1159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82557	0.86281	NaN	1	1	Median	161180000	89553000	71625000	63703000	29909000	33795000	51553000	30195000	21358000	0	0	0	45922000	29450000	16472000	23573	4880	22327	147352;147353;147354;147355;147356;147357	199124;199125;199126;199127;199128;199129	199127			6	
IDGVEQLNNILVIGMTNRPDLIDEALLRPGR	0	Unmodified	3443.8559	0.85587231	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			96.339	90.618	4	4.0812E-20	52475	160513_QHF_FH_JSI10Kac_6	112.9	91.443			0.9838	1.161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9838	1.161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133990000	68008000	65977000	0	0	0	133990000	68008000	65977000	0	0	0	0	0	0	23574	1586	22328	147358	199130	199130			1	
IDGVFAACQSGSFDK	1	Unmodified	1600.7192	0.71915705	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	56.835	56.296	2	0.00087996	51193	160511_QHF_FH_JSI12i_1	82.543	66.914			1.4741	1.5013	41.835	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0795	2.0181	NaN	1	1	Median	1.045	1.1168	NaN	1	1	Median	38488000	10461000	28027000	0	0	0	0	0	0	15731000	1647700	14084000	22757000	8813300	13944000	23575	1428	22329	147359;147360	199131;199132	199132			2	
IDHILDAL	0	Unmodified	908.49673	0.49673232	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	6.16	3	4	1				1	3		2	3	3	4	69.569	65.503	2	0.0019461	60030	160511_QHF_FH_JSI11i_1	83.801	78.976			1.0803	1.0482	15.573	12	1	Median	1.1775	0.99371	10.345	2	1	Median	0.7018	0.87339	4.6603	3	0	Plateau	1.0878	1.1166	8.9315	3	0	Median	1.1194	1.1702	15.913	4	0	Median	1892800000	1015700000	877060000	421870000	223920000	197960000	458320000	255350000	202970000	637090000	333230000	303860000	375510000	203230000	172280000	23576	816	22330	147361;147362;147363;147364;147365;147366;147367;147368;147369;147370;147371;147372	199133;199134;199135;199136;199137;199138;199139;199140;199141;199142;199143;199144;199145;199146;199147	199133			15	
IDHYLGK	1	Unmodified	844.4443	0.44430282	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.22	2	9	8						4	6	6	6	5	15.45	13.713	2;3	0.0027051	10964	160511_QHF_FH_JSI11i_2	67.032	26.929			0.89147	0.87305	40.254	23	7	Median	1.133	0.94041	48.997	6	2	Median	0.83035	0.98333	20.679	6	1	Median	0.89974	0.89541	46.574	6	2	Median	0.78496	0.85686	50.179	5	2	Median	5750000000	2635800000	3114200000	1177400000	444610000	732830000	1219700000	556190000	663520000	1795500000	862420000	933100000	1557300000	772550000	784720000	23577	1000	22331	147373;147374;147375;147376;147377;147378;147379;147380;147381;147382;147383;147384;147385;147386;147387;147388;147389;147390;147391;147392;147393;147394;147395	199148;199149;199150;199151;199152;199153;199154;199155;199156;199157;199158;199159;199160;199161;199162;199163;199164;199165;199166;199167;199168;199169;199170;199171;199172;199173;199174;199175;199176;199177	199169			30	
IDIDPEETVK	1	Unmodified	1157.5816	0.58158416	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	49.953	49.275	2	0.00046399	44457	160511_QHF_FH_JSI11i_1	84.213	75.68			0.98022	0.95203	6.0809	4	0	Median	1.1035	0.87345	NaN	1	0	Median	0.77441	0.9351	NaN	1	0	Median	1.0136	0.96927	NaN	1	0	Median	0.94792	1.0078	NaN	1	0	Median	3667800000	1806900000	1860900000	1016500000	500040000	516480000	621070000	247930000	373140000	1009800000	531520000	478300000	1020400000	527440000	493000000	23578	1831	22332	147396;147397;147398;147399;147400	199178;199179;199180;199181;199182;199183;199184;199185;199186;199187	199178			10	
IDIDYQK	1	Unmodified	893.44945	0.44944778	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		34.596	33.853	2	0.035999	29744	160511_QHF_FH_JSI9i_1	49.358	3.6406			1.0967	0.98059	16.927	2	0	Median	1.3347	1.1053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90116	0.86997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1025700000	419730000	605930000	513170000	187670000	325490000	0	0	0	512500000	232060000	280440000	0	0	0	23579	2412	22333	147401;147402	199188;199189;199190	199189			3	
IDIGLPPPK	1	Unmodified	948.56442	0.56441796	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	58.16	57.431	2	0.0092652	51194	160511_QHF_FH_JSI9i_1	51.854	18.058			0.85223	0.96275	11.733	3	2	Median	1.1729	0.99813	NaN	1	0	Median	0.85223	0.96275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78287	0.80194	NaN	1	1	Median	94769000	53326000	41443000	28875000	12801000	16075000	32252000	21030000	11222000	0	0	0	33642000	19495000	14146000	23580	4033	22334	147403;147404;147405;147406	199191;199192;199193;199194	199194			4	
IDIIPNPQER	0	Unmodified	1193.6404	0.64043645	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.13	6	4	4			3	4	4		3	7	7	8	59.003	53.97	2	6.2982E-08	47720	160511_QHF_FH_JSI10i_2	124.23	92.809			0.99049	1.0579	10.654	25	5	Median	1.237	1.0579	3.2486	3	0	Median	0.86691	0.97279	6.2792	7	2	Median	1.067	1.0662	12.433	7	1	Median	0.98606	1.0611	14.304	8	2	Median	56284000000	28005000000	28279000000	9577800000	4178400000	5399400000	17635000000	9735600000	7899400000	13172000000	6261800000	6910000000	15900000000	7829600000	8070000000	23581	898	22335	147407;147408;147409;147410;147411;147412;147413;147414;147415;147416;147417;147418;147419;147420;147421;147422;147423;147424;147425;147426;147427;147428;147429;147430;147431	199195;199196;199197;199198;199199;199200;199201;199202;199203;199204;199205;199206;199207;199208;199209;199210;199211;199212;199213;199214;199215;199216;199217;199218;199219;199220;199221;199222;199223;199224;199225;199226;199227;199228;199229;199230;199231;199232;199233;199234;199235;199236;199237;199238	199235			44	
IDIIPNPQERTLTLVDTGIGMTK	1	Unmodified	2524.3571	0.3570743	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	98.353	98.257	3	1.1904E-06	84989	160511_QHF_FH_JSI12i_3	69.922	62.21			0.33693	0.32966	103.41	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.036989	0.042737	NaN	1	1	Median	0.10412	0.095774	NaN	1	1	Median	0.33693	0.33284	NaN	1	0	Median	267060000	199930000	67128000	36146000	0	36146000	55588000	55086000	502320	49042000	47045000	1997100	126280000	97797000	28483000	23582	898	22336	147432;147433;147434;147435;147436	199239;199240;199241;199242;199243;199244;199245;199246	199245			8	
IDILDSALLRPGR	0	Unmodified	1437.8304	0.83036248	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		80.185	79.398	3	1.7921E-07	65271	160511_QHF_FH_JSI9i_3	113.65	93.909			0.86039	0.82218	30.411	6	0	Median	0.97228	0.82218	0.3194	2	0	Median	0.73317	0.87254	16.191	2	0	Median	1.1458	1.0991	58.49	2	0	Median	NaN	NaN	NaN	0	0	Median	315870000	171980000	143890000	155480000	78165000	77315000	100300000	62770000	37535000	60084000	31046000	29038000	0	0	0	23583	1984	22337	147437;147438;147439;147440;147441;147442	199247;199248;199249;199250;199251;199252;199253;199254;199255;199256;199257	199249			11	
IDILTELRDK	1	Unmodified	1214.6871	0.68705229	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	67.215	66.712	3	0.0011782	59184	160511_QHF_FH_JSI10i_2	57.785	31.112			0.99227	1.0503	16.705	4	0	Median	1.358	1.1691	NaN	1	0	Median	0.96891	1.1984	NaN	1	0	Median	1.0162	0.94358	NaN	1	0	Median	0.83098	0.84962	NaN	1	0	Median	187730000	100580000	87148000	11813000	4907200	6906300	28475000	13976000	14499000	77945000	41373000	36572000	69495000	40324000	29171000	23584	95	22338	147443;147444;147445;147446	199258;199259;199260;199261	199260			4	
IDILVNNGGMSQR	0	Unmodified	1415.7191	0.71909747	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.516	54.397	2	0.0012527	46688	160511_QHF_FH_JSI12i_3	61.353	35.415			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23585	5565	22339	147447;147448	199262;199263	199263			2	
IDINMSGFNETDDLK	1	Unmodified	1710.7771	0.77706586	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	2	1	1	76.73	76.066	2	1.7363E-40	69133	160511_QHF_FH_JSI10i_1	209.19	183.75			1.0533	1.0346	14.84	5	1	Median	1.2397	1.0346	NaN	1	0	Median	1.0172	1.2178	20.548	2	1	Median	1.0533	1.0124	NaN	1	0	Median	0.93408	0.97178	NaN	1	0	Median	2240400000	1127600000	1112800000	352630000	137770000	214850000	738800000	417460000	321350000	588100000	291750000	296340000	560880000	280670000	280210000	23586	1039	22340	147449;147450;147451;147452;147453	199264;199265;199266;199267;199268;199269;199270;199271;199272;199273;199274;199275;199276;199277;199278;199279	199271			16	
IDISNVK	1	Unmodified	787.44397	0.44396847	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	5.99	4	2	2			4	4	1		4	2	4	7	29.259	23.728	2	0.015772	17399	160513_QHF_FH_JSI10Kac_4	74.415	28.045			0.90536	0.88825	25.187	17	0	Median	1.3174	1.0902	25.978	4	0	Median	0.81432	0.97567	13.274	2	0	Median	0.8689	0.85385	23.873	4	0	Median	0.80062	0.80345	25.047	7	0	Median	13810000000	6518400000	7291600000	3375800000	1357000000	2018800000	3173000000	1679600000	1493400000	3436900000	1583200000	1853700000	3824300000	1898600000	1925800000	23587	2196	22341	147454;147455;147456;147457;147458;147459;147460;147461;147462;147463;147464;147465;147466;147467;147468;147469;147470	199280;199281;199282;199283;199284;199285;199286;199287;199288;199289;199290;199291;199292;199293	199284			14	
IDISPSTFRK	1	Unmodified	1162.6346	0.63462279	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		45.445	44.664	3	0.00085956	39212	160511_QHF_FH_JSI11i_3	56.359	37.614			1.1736	1.2105	22.945	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2395	1.4237	NaN	1	1	Median	1.1113	1.0292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	140870000	60865000	80008000	0	0	0	72209000	29603000	42607000	68663000	31262000	37401000	0	0	0	23588	5542	22342	147471;147472	199294;199295	199294			2	
IDISPVLLQK	1	Unmodified	1124.6805	0.68051035	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.999	74.34	2	0.0013717	67736	160511_QHF_FH_JSI12i_1	66.27	41.495			1.0806	1.1739	13.375	7	0	Median	1.1845	0.95501	NaN	1	0	Median	0.98	1.1809	0.84519	2	0	Median	1.0567	1.0401	23.896	2	0	Median	1.0933	1.1672	8.2526	2	0	Median	508320000	234610000	273700000	41846000	16772000	25074000	163830000	82831000	80997000	176070000	79214000	96855000	126570000	55795000	70778000	23589	1695	22343	147473;147474;147475;147476;147477;147478;147479;147480	199296;199297;199298;199299;199300;199301;199302;199303;199304;199305;199306	199299			11	
IDISQLVITK	1	Unmodified	1128.6754	0.67542497	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.74	4	4					2	1		2	3	4	2	81.026	77.686	2	0.0005431	72557	160511_QHF_FH_JSI12i_1	71.349	43.336			1.0122	1.0507	18.078	11	1	Median	1.1771	0.9667	11.783	2	0	Median	0.92538	1.1095	22.548	3	0	Plateau	1.1502	1.1355	19.69	4	1	Median	1.059	1.0987	2.6274	2	0	Median	282430000	141410000	141020000	46412000	21867000	24545000	89370000	49381000	39989000	94008000	44250000	49759000	52638000	25912000	26726000	23590	1307	22344	147481;147482;147483;147484;147485;147486;147487;147488;147489;147490;147491	199307;199308;199309;199310;199311;199312;199313;199314;199315;199316;199317;199318	199310			12	
IDIVENR	0	Unmodified	857.46068	0.46068117	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.07	4	6	1				3			4	3	3	4	29.358	26.225	2	1.4903E-05	22131	160511_QHF_FH_JSI12i_2	127.84	67.056			1.0077	1.1329	16.652	11	2	Median	1.4036	1.1781	5.7347	3	1	Plateau	0.99059	1.1854	3.9654	2	0	Median	1.0077	0.99532	16.366	3	0	Median	0.89445	0.96888	14.856	3	1	Median	17750000000	8663800000	9085900000	3577300000	1577100000	2000200000	3709100000	1824500000	1884700000	5957900000	2833700000	3124200000	4505500000	2428600000	2076900000	23591	779	22345	147492;147493;147494;147495;147496;147497;147498;147499;147500;147501;147502;147503;147504;147505	199319;199320;199321;199322;199323;199324;199325;199326;199327;199328;199329;199330;199331;199332;199333;199334;199335	199321			17	
IDKLMIEMDGTENK	2	Acetyl (K);2 Oxidation (M)	1709.7852	0.78518771	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	2	1			By MS/MS	By MS/MS	13	0						2						1	1	60.131	50.729	2	0.027291	26861	160513_QHF_FH_JSI11Kac_3	46.592	36.905			0.29919	0.30625	56.257	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2168	0.20574	NaN	1	0	Median	0.41289	0.45587	NaN	1	0	Median	4568400	3078800	1489500	0	0	0	0	0	0	2366700	1515800	850890	2201600	1563000	638640	23592	854	22346	147506;147507	199336	199336	523	380;381	1	
IDKLMIEMDGTENK	2	Acetyl (K);Oxidation (M)	1693.7903	0.79027309	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	65.982	56.758	2	0.0060473	29343	160513_QHF_FH_JSI12Kac_3	54.143	39.986			1.2385	1.3654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2385	1.3654	NaN	1	0	Median	2149100	938260	1210800	0	0	0	0	0	0	0	0	0	2149100	938260	1210800	23593	854	22346	147508	199337	199337	523	380;381	1	
IDKPILK	2	Unmodified	825.53239	0.53238955	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.718	2	5	7							3	3	3	5	21.938	21.312	3	0.0075716	18105	160511_QHF_FH_JSI9i_2	60.76	8.9727			0.83546	0.72319	133.73	14	12	Median	1.0385	0.85991	66.648	3	2	Median	0.38973	0.43598	89.975	3	3	Median	0.80789	0.7709	103.15	3	3	Median	0.59367	0.59544	207.43	5	4	Median	24285000000	10936000000	13349000000	4049400000	1467700000	2581700000	4151700000	2019800000	2131900000	4774500000	1794300000	2980200000	11310000000	5654600000	5655000000	23594	2039	22347	147509;147510;147511;147512;147513;147514;147515;147516;147517;147518;147519;147520;147521;147522	199338;199339;199340;199341;199342;199343;199344;199345;199346;199347;199348;199349;199350;199351;199352	199346			15	
IDKPILK	2	Acetyl (K)	867.54295	0.54295423	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		55.487	44.58	2	0.032176	25836	160513_QHF_FH_JSI11Kac_4	75.213	28.131			0.013189	0.012692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.013189	0.012692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42917000	42464000	453740	0	0	0	0	0	0	42917000	42464000	453740	0	0	0	23595	2039	22347	147523	199353	199353			1	
IDLAGSSLSGILDK	1	Unmodified	1387.7559	0.75586013	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	86.31	85.731	2	0.0021592	78096	160511_QHF_FH_JSI10i_1	57.225	23.019			0.95906	1.0872	6.9649	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96746	1.1421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95073	1.035	NaN	1	1	Median	31351000	16373000	14978000	0	0	0	15364000	7990000	7373800	0	0	0	15987000	8382800	7604000	23596	3982	22348	147524;147525	199354;199355	199355			2	
IDLAVLLGK	1	Unmodified	940.59572	0.59571809	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	1	3	3	3	91.17	88.437	2	3.7951E-06	81304	160511_QHF_FH_JSI11i_2	121.62	77.172			1.1303	1.0726	20.293	10	2	Median	1.1832	1.0088	NaN	1	0	Median	0.90959	1.0773	5.1021	3	0	Median	1.0905	1.0668	30.857	3	1	Plateau	0.83771	0.93877	24.49	3	1	Plateau	634330000	318310000	316020000	76579000	33755000	42824000	155070000	85256000	69810000	221090000	109280000	111810000	181600000	90014000	91583000	23597	2505	22349	147526;147527;147528;147529;147530;147531;147532;147533;147534;147535	199356;199357;199358;199359;199360;199361;199362;199363;199364;199365;199366;199367;199368;199369;199370;199371;199372;199373;199374;199375	199365			20	
IDLENTLEQEQEALVNR	0	Unmodified	2013.0015	0.0014631481	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	88.51	88.282	2;3	4.4336E-08	80208	160511_QHF_FH_JSI10i_1	171.21	152.11			0.81742	0.94478	17.399	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73218	0.84663	15.513	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0454	1.0697	NaN	1	0	Median	195380000	112610000	82765000	0	0	0	137550000	79358000	58193000	0	0	0	57827000	33256000	24571000	23598	2727	22350	147536;147537;147538	199376;199377;199378	199377			1	
IDLFEREEVGGR	0	Unmodified	1418.7154	0.7153923	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		51.991	50.426	2	0.02104	44294	160511_QHF_FH_JSI11i_3	59.426	46.81			0.7323	0.80823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7323	0.80823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30220000	16651000	13570000	0	0	0	30220000	16651000	13570000	0	0	0	0	0	0	23599	5300	22351	147539;147540	199379;199380	199379			2	
IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR	0	Unmodified	3234.6786	0.67855987	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.081	88.947	4	7.708E-15	51098	160513_QHF_FH_JSI9Kac_6	100.38	83.846			1.3269	1.1246	NaN	1	0	Median	1.3269	1.1246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97163000	65928000	31235000	97163000	65928000	31235000	0	0	0	0	0	0	0	0	0	23600	5475	22352	147541	199381	199381			1	
IDLIAIADFAAGAMENWGLVTYR	0	Unmodified	2509.2675	0.26753101	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		103.82	94.629	3	1.5761E-08	34428	160513_QHF_FH_JSI11Kac_1	85.945	78.584			1.1185	1.0828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1185	1.0828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9969900	4243200	5726800	0	0	0	0	0	0	9969900	4243200	5726800	0	0	0	23601	1862	22353	147542	199382	199382			1	
IDLKFIDTTSK	2	Acetyl (K)	1321.7129	0.71293269	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	81.133	70.557	2	0.018931	37290	160513_QHF_FH_JSI12Kac_4	50.292	29.989			0.95248	1.135	60.6	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.065	1.3059	NaN	1	0	Median	0.39313	0.39076	NaN	1	0	Median	0.60209	0.64691	NaN	1	0	Median	17528000	10280000	7248200	0	0	0	8366300	4324700	4041600	3066800	2320000	746770	6094600	3634900	2459800	23602	1484	22354	147543;147544;147545	199383;199384	199384	1486;1488		2	
IDLLDRK	1	Unmodified	871.51272	0.51271674	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							2	3	4	2	32.397	31.783	2;3	0.0013796	27601	160511_QHF_FH_JSI11i_3	91.906	8.292			0.83281	0.80745	78.482	11	4	Median	0.64972	0.54584	55.374	2	1	Median	0.8585	1.002	20.243	3	1	Median	0.81113	0.7877	102.8	4	1	Median	0.50125	0.50781	131.59	2	1	Median	2139400000	1219600000	919810000	421140000	293210000	127930000	676900000	358840000	318050000	694930000	340070000	354860000	346470000	227510000	118960000	23603	1823	22355	147546;147547;147548;147549;147550;147551;147552;147553;147554;147555;147556	199385;199386;199387;199388;199389;199390;199391;199392;199393;199394;199395;199396;199397;199398;199399;199400;199401	199388			17	
IDLLPEGK	1	Unmodified	883.50148	0.50148335	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.304	51.634	2	0.014487	46443	160511_QHF_FH_JSI10i_1	51.346	6.2644			1.2137	1.1757	24.645	3	0	Median	1.0009	0.85446	NaN	1	0	Median	1.2354	1.3876	NaN	1	0	Median	1.2137	1.1757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96141000	41605000	54536000	28303000	13344000	14959000	32739000	13085000	19654000	35099000	15176000	19923000	0	0	0	23604	1896	22356	147557;147558;147559	199402;199403;199404	199403			3	
IDLLSSLIYVSQN	0	Unmodified	1463.7872	0.78716026	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			102.65	102.61	2	2.0702E-05	93397	160511_QHF_FH_JSI10i_1	83.883	73.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23605	2437	22357	147560	199405	199405			1	
IDLMSISGHK	1	Unmodified	1099.5696	0.56957969	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	50.641	49.66	3	1.8476E-05	42658	160511_QHF_FH_JSI12i_2	73.887	50.533			0.95635	1.0032	5.6471	4	0	Median	1.1745	1.0233	NaN	1	0	Median	0.80454	0.9836	NaN	1	0	Median	1.0521	1.0622	NaN	1	0	Median	0.86931	0.9309	NaN	1	0	Median	339030000	185130000	153900000	56891000	21962000	34929000	86057000	45128000	40929000	113670000	62420000	51246000	82414000	55617000	26796000	23606	5712	22358	147561;147562;147563;147564	199406	199406			1	
IDLNYLR	0	Unmodified	905.49707	0.49706667	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	57.027	56.235	2	0.0572	48184	160511_QHF_FH_JSI12i_2	41.502	12.99			0.97572	1.0023	10.357	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7862	0.98877	NaN	1	0	Median	0.97572	0.95332	8.9956	2	0	Median	1.0339	1.1505	NaN	1	0	Median	319530000	162620000	156920000	0	0	0	96527000	50277000	46250000	123790000	60480000	63314000	99212000	51858000	47353000	23607	3372	22359	147565;147566;147567;147568	199407	199407			1	
IDLPAENSNSETIIITGK	1	Unmodified	1913.9946	0.99458686	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	73.605	73.162	2;3	4.0792E-16	66310	160511_QHF_FH_JSI10i_1	193.06	160.46			0.94391	0.94382	14.265	7	0	Median	1.1318	0.92453	NaN	1	0	Median	0.78867	0.91823	16.115	2	0	Median	0.8454	0.81705	20.398	2	0	Median	0.99163	1.0246	5.6529	2	0	Median	624500000	317120000	307380000	73753000	34307000	39446000	209790000	125700000	84097000	160400000	71859000	88543000	180550000	85253000	95296000	23608	2147	22360	147569;147570;147571;147572;147573;147574;147575	199408;199409;199410;199411;199412;199413;199414;199415;199416	199414			7	
IDLPEVQIEHDPELEK	1	Unmodified	1902.9575	0.95747307	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	72.133	71.755	3	0.0016482	64972	160511_QHF_FH_JSI10i_1	48.053	40.921			1.0685	1.0472	3.127	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91028	1.0242	NaN	1	0	Median	1.116	1.0707	NaN	1	0	Median	1.0685	1.0879	NaN	1	0	Median	89136000	47100000	42036000	0	0	0	33508000	17762000	15747000	31175000	15518000	15657000	24453000	13820000	10632000	23609	2584	22361	147576;147577;147578	199417;199418;199419	199419			3	
IDLPEYQGEPDEISIQK	1	Unmodified	1972.963	0.96295238	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	74.979	74.405	2;3	6.0018E-52	66227	160511_QHF_FH_JSI9i_1	214.23	198.1			1.1635	0.95411	14.713	5	1	Median	1.2526	1.0331	11.242	2	1	Median	0.72445	0.86979	NaN	1	0	Median	0.90179	0.8862	NaN	1	0	Median	1.1635	1.2146	NaN	1	0	Median	575300000	285330000	289980000	218790000	102550000	116240000	127210000	72201000	55005000	119280000	63115000	56167000	110020000	47456000	62567000	23610	4532	22362	147579;147580;147581;147582;147583	199420;199421;199422;199423;199424;199425;199426;199427;199428;199429;199430;199431;199432;199433	199431			14	
IDLQVPSSESK	1	Unmodified	1201.619	0.6190323	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.88	45.477	2	0.00011491	41490	160511_QHF_FH_JSI12i_1	91.855	54.043			0.94153	0.90991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94153	0.90991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109020000	52651000	56367000	0	0	0	0	0	0	109020000	52651000	56367000	0	0	0	23611	3839	22363	147584;147585;147586;147587	199434;199435;199436;199437	199435			4	
IDLRPVLGEGVPILASFLR	0	Unmodified	2064.2095	0.20954585	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	99.413	92.644	3	0.00044747	54061	160513_QHF_FH_JSI10Kac_6	64.203	49.731			0.90113	0.95479	7.0046	5	1	Median	1.0845	0.94195	NaN	1	0	Median	0.82127	0.93839	2.4502	2	0	Median	1.155	1.0999	NaN	1	1	Median	0.90113	0.95585	NaN	1	0	Median	1235800000	639220000	596600000	250970000	120030000	130940000	412730000	217880000	194850000	238290000	105600000	132690000	333830000	195720000	138120000	23612	3343	22364	147588;147589;147590;147591;147592	199438;199439;199440;199441;199442;199443	199443			6	
IDLSGAR	0	Unmodified	730.39735	0.39735263	5364	Q9UKD1	GMEB2	Glucocorticoid modulatory element-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	20.455	19.893	2	0.025066	17098	160511_QHF_FH_JSI10i_2	54.765	7.9982			0.86081	0.9434	5.1934	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78977	0.94702	NaN	1	0	Median	0.8425	0.86461	NaN	1	0	Median	0.89618	0.95778	2.6797	2	0	Median	598430000	324860000	273570000	0	0	0	150970000	93068000	57899000	225230000	118670000	106550000	222240000	113120000	109110000	23613	5364	22365	147593;147594;147595;147596	199444	199444			1	
IDMSSNNGCMRDPTLYR	0	Unmodified	2028.8816	0.88156448	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	47.595	46.872	3	0.024308	41451	160511_QHF_FH_JSI11i_3	34.909	26.309			1.4685	1.6386	54.887	6	1	Median	5.571	4.6748	NaN	1	0	Median	1.2628	1.5174	12.111	2	1	Median	1.5822	1.5222	67.878	2	0	Median	1.6136	1.6242	NaN	1	0	Median	483890000	207270000	276610000	61952000	7556100	54395000	162990000	76280000	86715000	206990000	106280000	100720000	51949000	17160000	34789000	23614	878	22366	147597;147598;147599;147600;147601;147602	199445;199446;199447;199448	199445			4	
IDNADELLESFLEGFHDESTQVQLQLLTAIVK	1	Unmodified	3614.8356	0.8355736	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.11	97.387	4	1.7686E-57	57627	160513_QHF_FH_JSI10Kac_6	170.36	168.72			0.70826	0.83545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70826	0.83545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130610000	76988000	53621000	0	0	0	130610000	76988000	53621000	0	0	0	0	0	0	23615	2296	22367	147603	199449	199449			1	
IDNADELLESFLEGFHDESTQVQLTLLTAIVK	1	Unmodified	3587.8247	0.82467457	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			103.82	98.1	3;4	1.4661E-208	58068	160513_QHF_FH_JSI10Kac_6	291.35	267.16			0.50279	0.59641	20.388	3	2	Median	NaN	NaN	NaN	0	0	Median	0.50279	0.59641	20.388	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	424690000	271530000	153170000	0	0	0	424690000	271530000	153170000	0	0	0	0	0	0	23616	2046	22368	147604;147605;147606	199450;199451;199452;199453;199454	199450			5	
IDNDGDGFVTTEELK	1	Unmodified	1651.7577	0.75771063	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.634	54.975	2	3.4715E-05	49865	160511_QHF_FH_JSI12i_1	121.45	88.22			0.7928	0.79959	5.8023	4	0	Median	0.86261	0.71636	NaN	1	0	Median	0.68648	0.80859	NaN	1	0	Median	0.81249	0.79068	NaN	1	0	Median	0.77359	0.80948	NaN	1	0	Median	885020000	493000000	392020000	151020000	85748000	65271000	233160000	146060000	87091000	265130000	141840000	123280000	235720000	119340000	116380000	23617	2652	22369	147607;147608;147609;147610	199455;199456;199457;199458	199456			4	
IDNSQVESGSLEDDWDFLPPK	1	Unmodified	2390.0914	0.091400367	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	29									11	5	6	7	92.74	92.236	2;3	2.1103E-211	83517	160511_QHF_FH_JSI11i_1	325.52	289.87			1.0633	0.96634	11.685	22	3	Median	1.1712	0.95298	12.128	10	2	Median	0.816	0.97396	10.924	3	0	Plateau	1.1148	1.0826	10.936	5	0	Plateau	1.1214	1.1806	10.601	4	1	Linear	1954000000	963830000	990200000	613270000	274810000	338460000	395190000	223160000	172030000	582520000	288910000	293610000	363050000	176950000	186090000	23618	1297	22370	147611;147612;147613;147614;147615;147616;147617;147618;147619;147620;147621;147622;147623;147624;147625;147626;147627;147628;147629;147630;147631;147632;147633;147634;147635;147636;147637;147638;147639	199459;199460;199461;199462;199463;199464;199465;199466;199467;199468;199469;199470;199471;199472;199473;199474;199475;199476;199477;199478;199479;199480;199481;199482;199483;199484;199485;199486;199487;199488;199489;199490;199491;199492;199493;199494;199495;199496;199497;199498;199499;199500;199501;199502;199503;199504;199505;199506;199507;199508;199509;199510;199511;199512;199513;199514;199515;199516;199517;199518;199519;199520;199521;199522	199467			64	
IDNSQVESGSLEDDWDFLPPKK	2	Unmodified	2518.1864	0.18636339	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.752	21	10	6							8	10	11	8	81.693	81.147	2;3;4	4.4702E-86	73981	160511_QHF_FH_JSI11i_1	244.16	236.77			0.96433	0.94318	24.156	34	12	Median	1.0409	0.89574	12.148	8	1	Median	0.77683	0.88959	32.344	9	2	Median	0.96433	0.93258	25.523	10	7	Median	0.96758	1.0501	11.452	7	2	Median	7074800000	3596800000	3478000000	1260200000	567810000	692360000	1698400000	974410000	724000000	2678300000	1292200000	1386200000	1437900000	762370000	675520000	23619	1297	22371	147640;147641;147642;147643;147644;147645;147646;147647;147648;147649;147650;147651;147652;147653;147654;147655;147656;147657;147658;147659;147660;147661;147662;147663;147664;147665;147666;147667;147668;147669;147670;147671;147672;147673;147674;147675;147676	199523;199524;199525;199526;199527;199528;199529;199530;199531;199532;199533;199534;199535;199536;199537;199538;199539;199540;199541;199542;199543;199544;199545;199546;199547;199548;199549;199550;199551;199552;199553;199554;199555;199556;199557;199558;199559;199560;199561;199562;199563;199564;199565;199566;199567;199568;199569;199570;199571;199572;199573;199574;199575;199576;199577;199578;199579;199580;199581;199582;199583;199584;199585;199586;199587;199588;199589;199590;199591;199592;199593;199594;199595;199596;199597;199598;199599;199600;199601;199602	199529			80	
IDNSVLVLIVGLSTVGAGAYAYK	1	Unmodified	2322.2835	0.28349865	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.94	5.57		4	1	4	2				5	2	4	5	5	102.15	96.734	3	1.5686E-22	52701	160513_QHF_FH_JSI11Kac_6	139.26	132.27			0.90498	0.95348	36.143	12	1	Median	1.0469	0.89508	12.471	2	0	Median	0.82142	0.98354	18.025	4	0	Median	1.0756	1.0343	16.196	3	1	Median	0.66028	0.7165	76.569	3	0	Plateau	706740000	366410000	340320000	188880000	90212000	98667000	178060000	108320000	69735000	301640000	144620000	157020000	38160000	23259000	14901000	23620	736	22372	147677;147678;147679;147680;147681;147682;147683;147684;147685;147686;147687;147688;147689;147690;147691;147692	199603;199604;199605;199606;199607;199608;199609;199610;199611;199612;199613;199614;199615;199616;199617;199618;199619;199620;199621	199606			19	
IDPEAFITR	0	Unmodified	1060.5553	0.55530983	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	66.071	65.255	2	0.011185	56044	160511_QHF_FH_JSI12i_2	49.097	2.015			0.90814	1.0165	6.0744	2	1	Median	NaN	NaN	NaN	0	0	Median	0.92824	1.0611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88847	0.97376	NaN	1	0	Median	301540000	162510000	139030000	0	0	0	118040000	63947000	54093000	0	0	0	183500000	98566000	84934000	23621	3860	22373	147693;147694	199622;199623	199622			2	
IDPHAPNEMLYGR	0	Unmodified	1511.7191	0.71909747	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.493	1	9	2							2	2	5	3	46.85	46.098	2;3	5.8792E-06	40352	160511_QHF_FH_JSI9i_2	119.88	104.12			0.99377	0.98592	16.47	12	4	Median	0.98626	0.865	5.5944	2	0	Median	0.78826	0.9829	0.17313	2	0	Median	0.98001	0.98774	15.727	5	3	Median	1.1207	1.2098	12.068	3	1	Median	1519000000	785180000	733790000	224410000	109030000	115380000	372690000	216200000	156490000	628870000	327920000	300950000	292990000	132020000	160970000	23622	380	22374	147695;147696;147697;147698;147699;147700;147701;147702;147703;147704;147705;147706	199624;199625;199626;199627;199628;199629;199630;199631;199632;199633;199634;199635;199636;199637;199638	199629			15	
IDPLAPLDK	1	Unmodified	980.55425	0.5542472	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			2	3	3	1	69.974	65.945	2	0.00019186	60215	160511_QHF_FH_JSI10i_1	85.676	49.796			0.95137	0.98649	19.481	9	0	Median	1.2465	1.0665	11.032	2	0	Median	0.77908	0.96671	2.1449	3	0	Plateau	1.0795	1.0451	36.936	3	0	Median	0.95137	0.98822	NaN	1	0	Median	2383800000	1144900000	1238900000	564520000	224270000	340250000	606410000	315410000	291000000	664970000	340610000	324360000	547870000	264630000	283250000	23623	1006	22375	147707;147708;147709;147710;147711;147712;147713;147714;147715	199639;199640;199641;199642;199643;199644;199645;199646;199647;199648;199649;199650;199651;199652	199647			14	
IDPLLPK	1	Unmodified	794.49019	0.49019038	4546	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	47.022	46.52	2	0.016664	41975	160511_QHF_FH_JSI11i_1	62.714	10.031			0.99432	1.0382	13.122	4	0	Median	NaN	NaN	NaN	0	0	Median	0.73542	0.85445	NaN	1	0	Median	1.1193	1.1134	7.0142	2	0	Median	0.95715	1.0172	NaN	1	0	Median	189000000	96065000	92939000	0	0	0	48831000	28662000	20170000	103980000	50705000	53274000	36193000	16698000	19494000	23624	4546	22376	147716;147717;147718;147719	199653;199654;199655;199656;199657	199654			5	
IDPNPADSQK	1	Unmodified	1083.5197	0.51965261	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		17.868	17.378	2	4.6404E-05	14736	160511_QHF_FH_JSI10i_1	93.649	73.129			1.0736	0.99333	5.786	3	0	Plateau	1.1422	0.94065	NaN	1	0	Median	0.80205	0.94625	NaN	1	0	Median	1.0736	1.0428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	206690000	101760000	104920000	58163000	27784000	30379000	73372000	34659000	38713000	75151000	39321000	35830000	0	0	0	23625	554	22377	147720;147721;147722	199658;199659;199660	199659			3	
IDPNVLLDPADEK	1	Unmodified	1437.7351	0.73512469	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.168	71.652	2	0.00012386	65134	160511_QHF_FH_JSI11i_1	87.216	58.26			0.78975	0.7461	5.4177	4	0	Median	0.86031	0.70572	NaN	1	0	Median	0.61437	0.7143	NaN	1	0	Median	0.81379	0.77978	NaN	1	0	Median	0.76642	0.77931	NaN	1	0	Median	494390000	295190000	199200000	123090000	72591000	50496000	104500000	68906000	35590000	150650000	91927000	58719000	116160000	61762000	54394000	23626	3563	22378	147723;147724;147725;147726	199661;199662;199663;199664;199665;199666;199667;199668;199669;199670;199671;199672;199673	199662			13	
IDPQTGWPFFVDHNSR	0	Unmodified	1914.9013	0.90129559	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	79.672	79.18	2;3	1.7506E-05	70806	160511_QHF_FH_JSI11i_3	89.261	84.644			1.0878	1.1961	32.085	9	3	Median	2.1272	1.8041	NaN	1	0	Median	1.3249	1.6036	39.706	2	1	Median	1.0878	1.0264	22.042	3	1	Plateau	1.189	1.1961	13.403	3	1	Median	891360000	414620000	476740000	76208000	23906000	52303000	214560000	92336000	122220000	309820000	162290000	147530000	290770000	136080000	154690000	23627	732	22379	147727;147728;147729;147730;147731;147732;147733;147734;147735	199674;199675;199676;199677;199678;199679;199680;199681;199682	199674			7	
IDPSALVQK	1	Unmodified	969.5495	0.54949617	4984	Q9NSI2	FAM207A	Protein FAM207A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	49.679	48.913	2	0.00072971	44217	160511_QHF_FH_JSI11i_1	75.213	52.59			0.81651	0.89459	15.79	3	1	Plateau	0.81651	0.67902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95577	0.93064	NaN	1	0	Median	0.78169	0.80805	NaN	1	0	Median	232700000	121420000	111280000	77272000	41706000	35565000	0	0	0	82670000	42750000	39920000	72759000	36963000	35796000	23628	4984	22380	147736;147737;147738;147739	199683;199684;199685;199686	199683			4	
IDPSKPESILK	2	Unmodified	1225.6918	0.69180331	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	45.333	44.546	3	0.0025811	38294	160511_QHF_FH_JSI11i_2	42.843	22.065			0.90494	0.97548	27.209	6	1	Median	1.1292	0.96486	NaN	1	0	Median	0.79327	0.93855	19.22	2	0	Median	0.73439	0.7146	45.559	2	1	Median	0.91473	1.0225	NaN	1	0	Median	725330000	379390000	345940000	118440000	55143000	63295000	199220000	100410000	98805000	241850000	128560000	113290000	165820000	95277000	70547000	23629	2568	22381	147740;147741;147742;147743;147744;147745	199687;199688;199689;199690;199691	199690			5	
IDPSSLSFNMWK	1	Unmodified	1423.6806	0.6805867	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	90.366	89.907	2	0.00024954	77688	160511_QHF_FH_JSI12i_2	77.379	61.155			1.045	0.97953	8.8995	5	1	Median	1.1239	0.97571	NaN	1	0	Median	0.80679	0.97796	0.22639	2	1	Median	1.1282	1.131	NaN	1	0	Median	1.045	1.1657	NaN	1	0	Median	391700000	195910000	195780000	78256000	27962000	50294000	121350000	67556000	53796000	119160000	64405000	54757000	72926000	35991000	36935000	23630	3749	22382	147746;147747;147748;147749;147750	199692;199693;199694;199695;199696;199697;199698	199693			6	
IDPTVLLGALPLR	0	Unmodified	1376.8391	0.83913625	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.07	101.96	2	8.7993E-08	87848	160511_QHF_FH_JSI12i_2	140.16	109.6			0.89998	1.0247	13.041	4	0	Median	1.4808	1.2404	NaN	1	0	Median	0.88888	1.0998	NaN	1	0	Median	0.91122	0.94071	NaN	1	0	Median	0.84687	0.95476	NaN	1	0	Median	352550000	184680000	167870000	62270000	26465000	35804000	112900000	63449000	49448000	91004000	47802000	43202000	86384000	46968000	39416000	23631	3764	22383	147751;147752;147753;147754	199699;199700;199701	199699			3	
IDPTVTMMQVEEKPDVTYSDVGGCK	2	Unmodified	2798.2813	0.2812681	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	75.292	74.939	3	9.4441E-09	68342	160511_QHF_FH_JSI12i_1	72.227	64.867			2.1448	2.1747	9.6401	3	0	Plateau	NaN	NaN	NaN	0	0	Median	2.0794	2.4336	NaN	1	0	Median	2.1448	2.1089	NaN	1	0	Median	2.4702	2.5334	NaN	1	0	Median	285020000	101990000	183020000	0	0	0	97116000	39751000	57365000	117630000	37595000	80037000	70266000	24644000	45623000	23632	1449	22384	147755;147756;147757	199702;199703;199704;199705	199703			4	
IDPYVFDR	0	Unmodified	1023.5025	0.50254598	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.415	54.463	2	0.0042745	48134	160511_QHF_FH_JSI10i_2	69.198	35.682			0.66401	0.69476	17.585	4	0	Median	0.84886	0.73849	NaN	1	0	Median	0.52728	0.65362	NaN	1	0	Median	0.56656	0.5797	NaN	1	0	Median	0.77822	0.87491	NaN	1	0	Median	595920000	342200000	253720000	123450000	68990000	54463000	102050000	71083000	30964000	279450000	148200000	131250000	90970000	53928000	37042000	23633	1604	22385	147758;147759;147760;147761	199706;199707;199708;199709	199709			4	
IDPYVFDREGLK	1	Unmodified	1450.7456	0.7456298	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							3	1	4	5	60.365	59.688	2;3	3.9903E-05	51273	160511_QHF_FH_JSI12i_3	131.82	82.518			0.98266	0.98229	13.221	13	2	Median	1.1369	0.98229	8.1331	3	0	Median	0.74083	0.90751	NaN	1	0	Median	1.1348	1.0574	13.138	4	0	Median	0.87249	0.8771	7.9587	5	2	Median	6267400000	3279500000	2988000000	384590000	157530000	227070000	573600000	342420000	231190000	1567900000	697130000	870720000	3741400000	2082400000	1659000000	23634	1604	22386	147762;147763;147764;147765;147766;147767;147768;147769;147770;147771;147772;147773;147774	199710;199711;199712;199713;199714;199715;199716;199717;199718;199719;199720;199721;199722;199723;199724	199721			15	
IDQEGKIPDETLEK	2	Unmodified	1613.8148	0.81483158	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	3									1			2	37.475	36.565	3	0.0029372	33144	160511_QHF_FH_JSI12i_1	49.482	19.749			1.9309	1.7782	3.3756	2	2	Median	2.235	1.8211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6681	1.7363	NaN	1	1	Median	130890000	56727000	74161000	55850000	22545000	33305000	0	0	0	0	0	0	75039000	34182000	40857000	23635	4777	22387	147775;147776;147777	199725;199726;199727	199726			3	
IDQISIEELDIIYK	1	Unmodified	1690.9029	0.9029183	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.27	100.15	2	6.8912E-07	90797	160511_QHF_FH_JSI12i_1	137.59	112.15			0.97658	0.94423	7.3279	4	0	Median	1.2091	0.97447	NaN	1	0	Median	0.78258	0.88651	NaN	1	0	Median	0.97414	0.91492	NaN	1	0	Median	0.97904	1.0463	NaN	1	0	Median	103530000	56477000	47055000	20304000	7819200	12484000	22743000	12003000	10739000	24118000	13422000	10696000	36367000	23233000	13135000	23636	5505	22388	147778;147779;147780;147781	199728;199729;199730;199731;199732;199733;199734;199735	199731			8	
IDQISMEEVDR	0	Unmodified	1333.6184	0.61838038	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			46.711	45.886	2	0.00077469	40834	160511_QHF_FH_JSI9i_1	80.706	59.836			1.1623	1.1317	0.927	2	2	Median	1.3714	1.1243	NaN	1	1	Median	0.98506	1.1391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	340750000	159240000	181510000	138470000	56647000	81822000	202280000	102590000	99690000	0	0	0	0	0	0	23637	1843	22389	147782;147783	199736;199737	199737			2	
IDQLEGDHQLIQEALIFDNK	1	Unmodified	2338.1805	0.18049015	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.88		4						1	3	2	2	2	2	88.627	84.092	3	9.7724E-09	78604	160511_QHF_FH_JSI12i_2	105.79	97.077			0.85278	0.93687	40.308	8	5	Median	0.83131	0.70721	42.095	2	1	Median	0.66319	0.78917	21.937	2	1	Median	1.6944	1.6798	9.1985	2	2	Median	0.83156	0.90504	8.3315	2	1	Median	743500000	384930000	358560000	219420000	120380000	99039000	136120000	80542000	55579000	85239000	30937000	54302000	302720000	153070000	149640000	23638	1021	22390	147784;147785;147786;147787;147788;147789;147790;147791	199738;199739;199740;199741;199742;199743;199744;199745;199746;199747;199748;199749;199750;199751	199739			14	
IDQLQEELLHTQLK	1	Unmodified	1706.9203	0.9202997	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	67.716	66.779	3	0.01403	57648	160511_QHF_FH_JSI12i_2	42.095	30.179			0.84053	0.88431	9.3595	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83385	0.82768	NaN	1	0	Median	0.84726	0.94482	NaN	1	0	Median	209250000	104450000	104810000	0	0	0	0	0	0	102020000	54000000	48016000	107240000	50446000	56789000	23639	409	22391	147792;147793	199752	199752			0	
IDQVNQLLELDHQK	1	Unmodified	1691.8842	0.88424855	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	2	3	64.438	63.62	2;3	1.8606E-07	55976	160511_QHF_FH_JSI9i_2	95.417	73.544			1.0008	0.89459	26.349	7	1	Median	1.0008	0.85251	NaN	1	0	Median	0.94048	1.1149	31.138	2	0	Median	1.0166	1.0019	23.243	2	0	Median	1.0439	1.1347	44.57	2	1	Median	1007100000	558240000	448880000	171700000	87834000	83863000	322450000	184720000	137730000	297710000	166160000	131550000	215270000	119530000	95739000	23640	1943	22392	147794;147795;147796;147797;147798;147799;147800;147801;147802;147803	199753;199754;199755;199756;199757;199758;199759;199760;199761;199762	199759			10	
IDQYQGADAVGLEEK	1	Unmodified	1634.7788	0.77878042	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	45.904	45.225	2	8.7902E-08	40238	160511_QHF_FH_JSI9i_1	134.68	116.42			0.89458	0.8787	16.11	7	7	Median	1.1089	0.90023	9.59	2	2	Median	0.72866	0.86383	20.907	2	2	Median	0.78231	0.74645	23.069	2	2	Median	0.89458	0.93349	NaN	1	1	Median	398510000	221970000	176540000	77197000	33850000	43348000	116370000	68376000	47998000	125820000	77149000	48672000	79115000	42595000	36521000	23641	328	22393	147804;147805;147806;147807;147808;147809;147810	199763;199764;199765;199766;199767;199768;199769	199769			7	
IDRDSYSPR	0	Unmodified	1107.5309	0.530886	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.465	11.773	3	0.058344	9228	160511_QHF_FH_JSI10i_3	23.378	9.2597			0.32151	0.35853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32151	0.35853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21055000	13616000	7439600	0	0	0	21055000	13616000	7439600	0	0	0	0	0	0	23642	4290	22394	147811	199770	199770			1	
IDREFALWLK	1	Unmodified	1289.7132	0.71320746	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	73.322	72.521	3	0.001209	59912	160511_QHF_FH_JSI9i_3	57.348	46.443			0.92639	0.86155	11.649	4	0	Median	1.027	0.84172	NaN	1	0	Median	0.67619	0.77986	NaN	1	0	Median	1.1204	1.0279	NaN	1	0	Median	0.83566	0.88185	NaN	1	0	Median	102440000	52053000	50384000	17719000	9173200	8546200	24089000	12718000	11371000	38969000	20226000	18743000	21660000	9936800	11723000	23643	28	22395	147812;147813;147814;147815	199771;199772;199773;199774	199774			4	
IDREISAILK	1	Unmodified	1156.6816	0.68157298	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							3	4	3	2	47.774	46.863	2;3	2.3629E-05	39186	160511_QHF_FH_JSI10i_3	90.05	68.678			0.82826	0.91994	11.561	12	0	Median	1.1821	0.97882	7.2314	3	0	Plateau	0.80738	0.99117	3.8943	4	0	Median	0.94028	0.88346	5.9932	3	0	Plateau	0.74597	0.80983	16.679	2	0	Median	5889800000	2698000000	3191700000	1104700000	467090000	637640000	2254100000	995320000	1258800000	2294400000	1103300000	1191100000	236560000	132300000	104260000	23644	4027	22396	147816;147817;147818;147819;147820;147821;147822;147823;147824;147825;147826;147827	199775;199776;199777;199778;199779;199780;199781;199782;199783;199784;199785;199786;199787;199788;199789;199790;199791;199792;199793;199794	199783			20	
IDRIEESDQGPYAIILAPTR	0	Unmodified	2256.175	0.17501084	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	75.477	75.026	3	1.5659E-10	65149	160511_QHF_FH_JSI12i_3	125.23	112.56			0.9403	1.0251	5.1845	4	0	Median	1.2776	1.0725	NaN	1	0	Median	0.82581	1.0243	NaN	1	0	Median	0.99359	0.94677	NaN	1	0	Median	0.88987	1.0258	NaN	1	0	Median	405420000	205600000	199820000	74932000	39716000	35216000	69167000	34830000	34337000	188230000	90509000	97726000	73091000	40545000	32545000	23645	4449	22397	147828;147829;147830;147831;147832	199795;199796;199797;199798;199799;199800;199801;199802	199802			7	
IDRLDGAHAPELTK	1	Unmodified	1534.8104	0.81035532	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.39		7	9						4	3	6	5	6	36.463	33.971	2;3;4	5.1358E-05	30014	160511_QHF_FH_JSI10i_2	87.932	73.237			1.0231	1.0827	25.89	18	1	Median	1.2968	1.1166	3.9653	2	0	Median	1.0207	1.1434	9.8495	5	0	Median	1.2572	1.1869	14.48	5	0	Median	0.80763	0.83462	42.892	6	1	Median	4620800000	2230900000	2390000000	289430000	143000000	146430000	661950000	346370000	315580000	2529600000	1206500000	1323100000	1139900000	534990000	604890000	23646	595	22398	147833;147834;147835;147836;147837;147838;147839;147840;147841;147842;147843;147844;147845;147846;147847;147848;147849;147850;147851;147852	199803;199804;199805;199806;199807;199808;199809;199810;199811;199812;199813;199814;199815;199816;199817;199818;199819;199820;199821;199822;199823;199824;199825	199818			23	
IDRPEAISEER	0	Unmodified	1313.6575	0.65754307	5716	Q9Y6B6	SAR1B	GTP-binding protein SAR1b	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	3	1	21.805	21.314	2;3	0.00067041	18236	160511_QHF_FH_JSI10i_2	62.528	50.797			0.9611	1.0401	20.669	8	1	Median	1.3904	1.1969	4.3204	2	0	Median	0.81661	0.99791	9.7895	2	0	Median	0.91595	0.84316	13.47	3	0	Median	1.2476	1.4607	NaN	1	1	Median	670490000	326660000	343830000	166870000	72873000	94001000	176320000	92433000	83886000	254710000	124600000	130110000	72586000	36757000	35830000	23647	5716	22399	147853;147854;147855;147856;147857;147858;147859;147860	199826;199827;199828;199829;199830;199831;199832;199833	199830			8	
IDRTDAISEEK	1	Unmodified	1275.6307	0.63065962	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.759	5	8	6							3	4	6	6	16.064	15.605	2;3	2.7102E-09	12830	160511_QHF_FH_JSI11i_3	158.05	127.48			1.0263	1.0257	17.855	19	0	Median	1.1446	0.98435	5.4869	3	0	Median	0.87403	1.0718	10.762	4	0	Median	1.0898	1.1043	24.534	6	0	Median	0.91288	0.96315	21.19	6	0	Median	4000700000	1959800000	2040900000	447860000	189460000	258400000	933330000	520240000	413100000	1399700000	622910000	776780000	1219800000	627190000	592650000	23648	4941	22400	147861;147862;147863;147864;147865;147866;147867;147868;147869;147870;147871;147872;147873;147874;147875;147876;147877;147878;147879	199834;199835;199836;199837;199838;199839;199840;199841;199842;199843;199844;199845;199846;199847;199848;199849;199850;199851;199852;199853;199854;199855;199856	199834			23	
IDRTEFIPSTDPFQK	1	Unmodified	1792.8996	0.89956426	4742	Q9H6E4	CCDC134	Coiled-coil domain-containing protein 134	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	67.491	67.195	3	0.038368	58149	160511_QHF_FH_JSI12i_3	34.909	27.679			0.78371	0.78758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78371	0.78758	NaN	1	1	Median	52462000	28715000	23747000	0	0	0	0	0	0	0	0	0	52462000	28715000	23747000	23649	4742	22401	147880	199857	199857			1	
IDRVETR	0	Unmodified	887.48248	0.48247924	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			6.5444	6.0481	3	0.018737	4104	160511_QHF_FH_JSI10i_3	43.808	5.0161			1.4219	1.6539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4219	1.6539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183550000	83943000	99606000	0	0	0	183550000	83943000	99606000	0	0	0	0	0	0	23650	2517	22402	147881	199858	199858			1	
IDSANMNDDITTSLR	0	Unmodified	1664.7676	0.76756381	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				55.09	53.913	2	0.026153	47959	160511_QHF_FH_JSI9i_1	59.225	48.854			0.71429	0.59212	NaN	1	1	Median	0.71429	0.59212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166860000	99658000	67199000	166860000	99658000	67199000	0	0	0	0	0	0	0	0	0	23651	5523	22403	147882	199859	199859			1	
IDSDISGTLK	1	Unmodified	1047.5448	0.54480473	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.301	36.689	2	0.0005364	33037	160511_QHF_FH_JSI11i_1	81.338	41.336			1.0184	0.906	21.101	4	0	Median	1.0374	0.85262	NaN	1	0	Median	0.65707	0.7751	NaN	1	0	Median	0.99984	0.96272	NaN	1	0	Median	1.2049	1.2614	NaN	1	0	Median	2017800000	1040200000	977590000	461530000	236690000	224840000	523400000	271160000	252240000	574210000	307420000	266790000	458660000	224940000	233720000	23652	5508	22404	147883;147884;147885;147886	199860;199861;199862;199863;199864;199865;199866	199861			7	
IDSEGGVSANHTSR	0	Unmodified	1428.6593	0.65933399	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.79		7	4				3			2	2	5	5	10.093	8.0783	2;3	1.2682E-15	6718	160511_QHF_FH_JSI11i_3	155.43	124.87			1.0731	1.0596	9.151	14	1	Median	1.1698	1.0068	0.51202	2	0	Median	0.9954	1.1689	5.2029	2	0	Median	1.0914	1.089	5.1055	5	0	Median	1.0226	1.2458	13.514	5	1	Linear	949980000	445240000	504740000	160550000	71088000	89460000	38218000	21271000	16947000	409190000	194820000	214370000	342020000	158060000	183960000	23653	1747	22405	147887;147888;147889;147890;147891;147892;147893;147894;147895;147896;147897;147898;147899;147900	199867;199868;199869;199870;199871;199872;199873;199874;199875;199876;199877;199878;199879;199880;199881;199882;199883;199884	199867			18	
IDSFNSLYMLVK	1	Unmodified	1428.7323	0.73228792	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	95.609	95.234	2	0.0060429	82116	160511_QHF_FH_JSI12i_2	52.725	35.495			0.64031	0.77233	5.3386	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.56862	0.73146	NaN	1	0	Median	0.80418	0.78872	NaN	1	0	Median	0.64031	0.71139	NaN	1	0	Median	37873000	22621000	15253000	0	0	0	12827000	7673400	5153100	13254000	7760100	5494000	11793000	7187100	4605700	23654	5024	22406	147901;147902;147903	199885;199886;199887	199885			3	
IDSIADHVNSAAVNVEEGTK	1	Unmodified	2068.0073	0.0072768075	1886	P56962	STX17	Syntaxin-17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.642	53.533	3	1.9596E-05	45819	160511_QHF_FH_JSI12i_2	85.974	30.537			0.97069	1.2017	17.77	3	3	Median	1.5304	1.2905	NaN	1	1	Median	0.97069	1.2017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80749	0.92114	NaN	1	1	Median	79066000	31350000	47716000	22282000	7834000	14448000	21597000	7851000	13746000	0	0	0	35186000	15665000	19521000	23655	1886	22407	147904;147905;147906;147907	199888;199889;199890;199891	199888			4	
IDSIEDRYPR	0	Unmodified	1262.6255	0.62551466	2363	Q13158	FADD	FAS-associated death domain protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	26.837	26.818	3	0.0042196	22852	160511_QHF_FH_JSI11i_3	41.283	32.77			0.83602	0.8259	4.8645	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85333	0.79798	NaN	1	0	Median	0.81907	0.8548	NaN	1	0	Median	97072000	45273000	51798000	0	0	0	0	0	0	50211000	24937000	25275000	46860000	20337000	26524000	23656	2363	22408	147908;147909	199892;199893;199894	199892			3	
IDSIPHLNNSTPLVDPSVYGYGVQK	1	Unmodified	2712.3759	0.37589549	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	84.504	84.023	3	1.6688E-16	73959	160511_QHF_FH_JSI9i_2	115.01	111.74			1.0113	0.98163	10.45	8	1	Median	1.0252	0.87129	NaN	1	0	Median	0.78638	0.95191	5.2244	2	0	Median	1.0819	1.0361	7.4075	3	1	Median	0.96709	1.0369	17.45	2	0	Median	593060000	301180000	291870000	95635000	44820000	50815000	149940000	81119000	68824000	195800000	94924000	100870000	151680000	80321000	71360000	23657	4118	22409	147910;147911;147912;147913;147914;147915;147916;147917	199895;199896;199897;199898;199899;199900;199901;199902;199903;199904;199905;199906;199907;199908;199909	199905			15	
IDSLSAQLSQLQK	1	Unmodified	1429.7777	0.77765821	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	3.31	10	3					1			4	5	3	2	65.407	63.978	2;3	1.4718E-13	58388	160511_QHF_FH_JSI12i_1	128.36	109.91			0.94842	0.97791	14.844	13	5	Median	1.2533	1.0245	24.26	4	3	Median	0.90747	1.0949	13.353	5	2	Median	0.98895	0.97791	8.3885	3	0	Median	0.89123	0.94914	NaN	1	0	Median	2238300000	1056000000	1182300000	510160000	222330000	287830000	652090000	334800000	317290000	654330000	288680000	365650000	421700000	210190000	211510000	23658	791	22410	147918;147919;147920;147921;147922;147923;147924;147925;147926;147927;147928;147929;147930;147931	199910;199911;199912;199913;199914;199915;199916;199917;199918;199919;199920;199921;199922;199923;199924;199925;199926	199915			17	
IDSNLDELSMGLGR	0	Unmodified	1518.7348	0.73480712	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	73.808	73.308	2	3.4968E-06	66737	160511_QHF_FH_JSI11i_1	125.82	99.773			1.4235	1.3736	17.751	4	4	Median	1.3361	1.085	NaN	1	1	Median	1.0814	1.2719	NaN	1	1	Median	1.5286	1.4833	NaN	1	1	Median	1.5165	1.6249	NaN	1	1	Median	358350000	159620000	198730000	82020000	34614000	47406000	93371000	46957000	46414000	75618000	35985000	39633000	107340000	42067000	65276000	23659	720	22411	147932;147933;147934;147935;147936	199927;199928;199929;199930;199931	199927			5	
IDSVAAQPTATSPVVYTRPAISSFSSSGIGFGESLK	1	Unmodified	3626.8468	0.84680699	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				95.794	94.832	3	0.00051544	77423	160511_QHF_FH_JSI9i_3	32.483	27.271			1.8297	1.5494	NaN	1	0	Median	1.8297	1.5494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11431000	3976200	7454500	11431000	3976200	7454500	0	0	0	0	0	0	0	0	0	23660	1684	22412	147937	199932	199932			1	
IDSVAVNISNLVLENQPPR	0	Unmodified	2077.1168	0.11676768	3557	Q8N6M0	OTUD6B	OTU domain-containing protein 6B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	96.287	96.04	3	0.0013014	83240	160511_QHF_FH_JSI12i_3	47.726	30.026			2.5728	3.159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5728	3.159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23610000	6404400	17205000	0	0	0	23610000	6404400	17205000	0	0	0	0	0	0	23661	3557	22413	147938;147939;147940	199933;199934;199935	199935			3	
IDSWENAEDFLEK	1	Unmodified	1594.7151	0.71511753	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	80.01	79.578	2	0.0011918	72570	160511_QHF_FH_JSI12i_1	75.819	61.584			0.61157	0.61029	18.008	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54586	0.53732	NaN	1	1	Median	0.68518	0.69317	NaN	1	1	Median	54604000	33073000	21531000	0	0	0	0	0	0	27538000	17163000	10376000	27066000	15910000	11156000	23662	2471	22414	147941;147942	199936;199937	199937			2	
IDTHNIIVNQLVFPDPEK	1	Unmodified	2091.1001	0.10005498	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	1	3	2	88.182	87.664	3	2.0651E-06	78282	160511_QHF_FH_JSI11i_3	95.814	75.723			1.0912	1.0528	21.325	8	1	Median	0.90848	0.76991	30.425	2	0	Median	0.82632	1.014	NaN	1	0	Median	1.1772	1.1459	4.4343	3	1	Median	1.0408	1.1176	11.946	2	0	Median	434710000	196790000	237930000	76440000	37656000	38785000	76952000	36425000	40527000	170340000	69439000	100900000	110980000	53268000	57714000	23663	357	22415	147943;147944;147945;147946;147947;147948;147949;147950	199938;199939;199940;199941;199942;199943;199944;199945;199946;199947;199948;199949;199950;199951;199952;199953;199954;199955;199956;199957	199939			20	
IDTHNIIVNQLVFPDPEKPCK	2	Unmodified	2476.2784	0.27843005	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	80.434	80.314	3;4	1.5639E-09	69620	160511_QHF_FH_JSI12i_3	106.03	101.37			0.91418	0.85653	15.549	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91418	0.85653	2.998	2	1	Median	0.92976	0.95751	24.333	2	1	Median	386130000	179100000	207030000	0	0	0	0	0	0	148140000	68492000	79646000	237990000	110610000	127380000	23664	357	22416	147951;147952;147953;147954;147955	199958;199959;199960;199961;199962;199963;199964;199965	199961			8	
IDTHPSPSHSSTVK	1	Unmodified	1491.7318	0.73177065	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	9.2848	9.3335	2;3	0.0075329	6967	160511_QHF_FH_JSI11i_3	60.434	41.119			1.0683	1.0409	33.812	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5525	1.4698	38.253	2	1	Median	0.92452	0.94446	3.1908	2	1	Median	178440000	82849000	95588000	0	0	0	0	0	0	70446000	32882000	37564000	107990000	49967000	58024000	23665	3675	22417	147956;147957;147958;147959	199966;199967;199968	199966			2	
IDTIEIITDR	0	Unmodified	1187.6398	0.63976774	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.93	4	4	3				2	3		3	5	3	5	68.201	64.303	2	6.862E-11	58907	160511_QHF_FH_JSI11i_1	144.77	112.84			0.96673	1.0332	18.041	16	1	Median	1.185	0.99163	5.3928	3	0	Median	0.92978	1.1134	7.5796	5	1	Median	1.1267	1.1394	31.52	3	0	Median	0.85918	0.93028	9.8001	5	0	Median	10393000000	4959300000	5433700000	1694400000	748300000	946050000	2785700000	1376500000	1409200000	2925200000	1280100000	1645100000	2987800000	1554400000	1433400000	23666	1212	22418	147960;147961;147962;147963;147964;147965;147966;147967;147968;147969;147970;147971;147972;147973;147974;147975	199969;199970;199971;199972;199973;199974;199975;199976;199977;199978;199979;199980;199981;199982;199983;199984;199985;199986;199987;199988;199989;199990;199991;199992;199993	199970			25	
IDTIEIITDRQSGK	1	Unmodified	1587.8468	0.84680041	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.861	53.623	3	0.054835	46028	160511_QHF_FH_JSI12i_3	31.319	19.879			0.8226	0.83296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8226	0.83296	NaN	1	1	Median	328450000	137690000	190750000	0	0	0	0	0	0	0	0	0	328450000	137690000	190750000	23667	1212	22419	147976	199994	199994			1	
IDTMGTYHGMTLK	1	Unmodified	1466.6898	0.68977118	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	46.966	46.132	3	0.00055982	39531	160511_QHF_FH_JSI12i_2	54.898	54.898			0.88885	0.89974	7.5298	5	0	Median	0.99934	0.83738	NaN	1	0	Median	0.7218	0.89974	NaN	1	0	Median	0.84309	0.85887	NaN	1	0	Median	0.916	0.9792	3.942	2	0	Median	526920000	281250000	245660000	74545000	36665000	37880000	103350000	53449000	49904000	182350000	100120000	82233000	166670000	91024000	75644000	23668	3090	22420	147977;147978;147979;147980;147981	199995;199996;199997;199998;199999	199995			5	
IDTRNELESYAYSLK	1	Unmodified	1800.8894	0.8893935	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	66.023	65.351	2;3	2.7301E-05	57101	160511_QHF_FH_JSI11i_2	97.836	78.513			1.184	1.2261	18.205	9	1	Median	1.409	1.2261	NaN	1	1	Median	0.83478	1.0047	NaN	1	0	Median	1.184	1.2029	8.5869	3	0	Median	1.3509	1.4256	21.45	4	0	Median	1265200000	554090000	711080000	24397000	7899200	16498000	42925000	20466000	22459000	508110000	239270000	268840000	689740000	286450000	403290000	23669	982	22421	147982;147983;147984;147985;147986;147987;147988;147989;147990	200000;200001;200002;200003;200004;200005;200006;200007;200008;200009	200004			10	
IDTTHLLDSLR	0	Unmodified	1282.6881	0.68811492	4563	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		23.852	23.852	3	0.048815	20367	160511_QHF_FH_JSI11i_3	12.955	0			0.26394	0.24934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26394	0.24934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	200910000	159500000	41408000	0	0	0	0	0	0	200910000	159500000	41408000	0	0	0	23670	4563	22422	147991	200010	200010			1	
IDVAFVDR	0	Unmodified	933.49198	0.4919813	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	54.041	53.629	2	0.0090002	45822	160511_QHF_FH_JSI12i_2	56.659	25.923			1.3084	1.2757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3084	1.2757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	170360000	73445000	96919000	0	0	0	0	0	0	170360000	73445000	96919000	0	0	0	23671	2692	22423	147992;147993;147994	200011;200012;200013	200012			3	
IDVDAPDIDIHGPDAK	1	Unmodified	1689.821	0.82097959	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.053	62.424	3	0.00015785	56574	160511_QHF_FH_JSI11i_1	64.56	59.351			0.96244	1.0703	29.467	4	0	Median	0.7554	0.60788	NaN	1	0	Median	0.88272	1.0445	NaN	1	0	Median	1.1572	1.1353	NaN	1	0	Median	1.0494	1.0967	NaN	1	0	Median	378010000	175310000	202700000	19442000	10559000	8883900	123500000	60556000	62944000	110350000	44713000	65634000	124720000	59485000	65238000	23672	2286	22424	147995;147996;147997;147998	200014;200015;200016;200017;200018;200019;200020	200014			7	
IDVGEAEPR	0	Unmodified	984.48762	0.4876242	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.038	26.458	2	3.1964E-05	23581	160511_QHF_FH_JSI12i_1	101.54	55.116			1.0708	1.1556	13.264	4	0	Median	1.6703	1.3793	NaN	1	0	Median	1.0061	1.189	NaN	1	0	Median	1.1396	1.123	NaN	1	0	Median	0.95569	1.0027	NaN	1	0	Median	1889600000	963500000	926120000	480410000	219500000	260910000	505160000	284100000	221060000	452130000	223630000	228500000	451920000	236280000	215640000	23673	1823	22425	147999;148000;148001;148002	200021;200022;200023;200024;200025;200026	200023			6	
IDVGFVYDEPGHAVMR	0	Unmodified	1803.8614	0.86140461	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	69.668	68.837	3	1.4946E-05	60240	160511_QHF_FH_JSI11i_2	84.874	79.203			0.81195	0.92288	8.3767	6	5	Median	1.2088	1.0326	NaN	1	1	Median	0.76025	0.92288	2.4469	2	2	Median	0.91899	0.92296	12.53	2	2	Median	0.76946	0.85222	NaN	1	0	Median	541410000	278710000	262700000	65641000	26376000	39265000	135750000	80470000	55284000	236770000	112450000	124320000	103250000	59414000	43831000	23674	5161	22426	148003;148004;148005;148006;148007;148008	200027;200028;200029;200030;200031;200032;200033;200034	200031			8	
IDVLLQQIEELGSEGK	1	Unmodified	1769.9411	0.94109472	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.15	101.12	2	1.0781E-27	91812	160511_QHF_FH_JSI10i_1	148.91	125.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23675	660	22427	148009	200035	200035			1	
IDVPANRYDLLCLEGLVR	0	Unmodified	2115.1147	0.11465919	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	98.7	98.673	3	0.0012203	87816	160511_QHF_FH_JSI11i_3	41.86	9.1716			0.74957	0.68949	53.569	3	1	Median	NaN	NaN	NaN	0	0	Median	0.37144	0.43838	NaN	1	0	Median	0.74957	0.68949	NaN	1	1	Median	1.2533	1.2746	NaN	1	0	Median	82480000	44735000	37745000	0	0	0	17291000	12060000	5231100	31833000	16872000	14961000	33356000	15803000	17553000	23676	4982	22428	148010;148011;148012	200036;200037	200036			2	
IDVTAPDVSIEEPEGK	1	Unmodified	1697.836	0.83596095	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	65.771	65.163	2;3	3.4369E-15	59290	160511_QHF_FH_JSI12i_1	162.22	128.81			1.0469	1.0523	9.6001	8	0	Median	1.3253	1.0826	5.5247	2	0	Median	0.93367	1.0956	22.322	2	0	Median	1.0781	1.0277	8.0338	2	0	Median	0.99485	1.0523	1.4609	2	0	Median	1187900000	568860000	619010000	249300000	118260000	131040000	340220000	156260000	183960000	330860000	167280000	163570000	267490000	127050000	140440000	23677	2286	22429	148013;148014;148015;148016;148017;148018;148019;148020	200038;200039;200040;200041;200042;200043;200044;200045;200046;200047;200048;200049;200050;200051;200052	200044			15	
IDVVVNNAGILR	0	Unmodified	1281.7405	0.74048484	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	66.341	65.445	2	0.00019717	56212	160511_QHF_FH_JSI12i_2	80.688	50.434			0.87355	0.89086	22.009	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.48134	0.58377	NaN	1	0	Median	0.87523	0.89517	NaN	1	0	Median	0.5843	0.66014	NaN	1	0	Median	304690000	180040000	124650000	0	0	0	75736000	48102000	27634000	136490000	75534000	60960000	92464000	56409000	36056000	23678	1747	22430	148021;148022;148023	200053;200054;200055;200056;200057;200058	200054			6	
IDVYGFSALWK	1	Unmodified	1297.6707	0.67067394	5259	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	1	2	2	2	94.332	89.527	2	4.3064E-07	43609	160513_QHF_FH_JSI12Kac_6	110.53	92.222			0.99189	1.0408	19.1	7	1	Median	1.1627	0.99486	NaN	1	0	Median	0.68533	0.82278	33.248	2	1	Median	1.0143	1.0016	13.214	2	0	Median	1.0286	1.1037	2.6576	2	0	Median	1904200000	874250000	1030000000	387030000	184270000	202770000	571070000	295300000	275770000	638320000	260790000	377540000	307800000	133890000	173910000	23679	5259	22431	148024;148025;148026;148027;148028;148029;148030	200059;200060;200061;200062;200063;200064;200065;200066;200067;200068;200069;200070;200071	200069			13	
IDWNKILSYK	2	Acetyl (K)	1320.7078	0.70778773	1788;1606	P47755;P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	no	no	1	0	0	1				By MS/MS	16	0									1				1	87.174	77.731	2	0.00047061	41568	160513_QHF_FH_JSI12Kac_6	90.685	65.831			0.85869	0.91033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85869	0.91033	NaN	1	0	Median	313820000	164150000	149670000	0	0	0	0	0	0	0	0	0	313820000	164150000	149670000	23680	1606;1788	22432	148031	200072;200073	200073	1630		2	
IDYASLDPLNIK	1	Unmodified	1360.7238	0.72383172	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.769	85.312	2	0.0002858	77510	160511_QHF_FH_JSI10i_1	92.538	74.719			0.81525	0.80624	10.072	4	0	Median	0.91328	0.73151	NaN	1	0	Median	0.81572	0.92946	NaN	1	0	Median	0.79866	0.78631	NaN	1	0	Median	0.81479	0.82668	NaN	1	0	Median	102890000	57550000	45341000	26366000	14368000	11998000	25434000	13207000	12227000	26523000	16679000	9843600	24568000	13295000	11273000	23681	3517	22433	148032;148033;148034;148035	200074;200075	200075			2	
IDYGEYMDK	1	Unmodified	1132.4747	0.47467625	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.441	44.768	2	0.0025867	40060	160511_QHF_FH_JSI9i_1	64.04	54.452			0.96081	1.0182	4.8662	4	0	Linear	1.1906	0.98529	NaN	1	0	Median	0.93584	1.0808	NaN	1	0	Median	1.0247	0.97957	NaN	1	0	Median	0.98952	1.0521	NaN	1	0	Median	3974400000	1871100000	2103300000	544180000	266830000	277350000	1226700000	642220000	584440000	1035300000	446100000	589220000	1168300000	515940000	652330000	23682	2222	22434	148036;148037;148038;148039	200076;200077;200078;200079;200080;200081	200081			6	
IDYIAGLDSR	0	Unmodified	1121.5717	0.57168818	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	54.71	53.9	2	1.4382E-07	48820	160511_QHF_FH_JSI11i_1	136.57	120.36			1.0107	1.048	9.4496	8	0	Median	1.3237	1.1079	12.086	2	0	Median	0.92737	1.1232	12.663	2	0	Median	1.1232	1.1051	16.199	2	0	Median	0.96439	1.048	0.69113	2	0	Median	4177100000	1952900000	2224300000	979500000	403020000	576480000	1059000000	509400000	549590000	1280400000	626180000	654250000	858190000	414260000	443930000	23683	877	22435	148040;148041;148042;148043;148044;148045;148046;148047;148048	200082;200083;200084;200085;200086;200087;200088;200089;200090;200091;200092;200093;200094;200095;200096;200097;200098	200083			17	
IDYPPEFHQRPGYLK	1	Unmodified	1858.9366	0.93661847	4175	Q96MU7	YTHDC1	YTH domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		50.787	50.787	3	0.0071467	44924	160511_QHF_FH_JSI11i_3	49.482	32.403			1.2133	1.1228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2133	1.1228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14345000	5261600	9083800	0	0	0	0	0	0	14345000	5261600	9083800	0	0	0	23684	4175	22436	148049	200099	200099			1	
IEADLEHLK	1	Unmodified	1066.5659	0.56587452	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		38.499	37.795	3	0.0061655	32263	160511_QHF_FH_JSI11i_2	48.602	41.473			1.7694	1.9574	66.127	2	1	Median	NaN	NaN	NaN	0	0	Median	1.023	1.2263	NaN	1	0	Median	3.0601	3.1243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38730000	14274000	24456000	0	0	0	18246000	9384700	8861100	20484000	4889100	15595000	0	0	0	23685	5164	22437	148050;148051	200100;200101	200100			2	
IEADSESQEDIIR	0	Unmodified	1503.7053	0.70528113	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.344	37.725	2	2.3001E-06	33997	160511_QHF_FH_JSI11i_1	120.96	78.565			1.1033	1.0775	6.742	4	4	Median	1.2076	0.99865	NaN	1	1	Median	0.92816	1.0978	NaN	1	1	Median	1.2047	1.1728	NaN	1	1	Median	1.0105	1.0575	NaN	1	1	Median	477260000	252760000	224500000	99251000	48374000	50877000	110590000	59711000	50883000	143140000	68739000	74401000	124270000	75935000	48339000	23686	1868	22438	148052;148053;148054;148055	200102;200103;200104;200105	200102			4	
IEAELQDICNDVLELLDK	1	Unmodified	2129.0562	0.056200835	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		3									1	2		102.81	102.72	2;3	9.0045E-31	90515	160511_QHF_FH_JSI11i_2	220.14	168.37			0.89801	0.90435	13.668	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.57187	0.69733	NaN	1	0	Median	0.85904	0.87905	4.0123	2	0	Median	NaN	NaN	NaN	0	0	Median	133880000	74481000	59395000	0	0	0	22853000	12183000	10670000	111020000	62298000	48725000	0	0	0	23687	1384	22439	148056;148057;148058	200106;200107	200106			2	
IEAFRASLSK	1	Unmodified	1120.6241	0.6240581	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		35.721	34.997	3	0.037207	29178	160511_QHF_FH_JSI10i_3	33.87	15.535			1.654	1.713	37.528	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9352	2.2336	NaN	1	1	Median	1.4136	1.3137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	268750000	131730000	137020000	0	0	0	179590000	87323000	92271000	89155000	44410000	44745000	0	0	0	23688	775;866	22440	148059;148060	200108;200109	200109			2	
IEAIFAKHR	1	Acetyl (K)	1125.6295	0.62947783	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	67.647	58.182	2;3	0.013311	30823	160513_QHF_FH_JSI9Kac_6	38.086	10.757			1.0201	0.94595	17.031	3	0	Plateau	1.1774	0.97055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.039	1.1029	21.707	2	0	Median	49783000	24902000	24881000	16334000	7396000	8938400	0	0	0	0	0	0	33449000	17506000	15943000	23689	5195	22441	148061;148062;148063;148064	200110;200111;200112;200113	200111	3331		4	
IEAINQAIANEYEVR	0	Unmodified	1731.8792	0.87916317	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	65.324	64.566	2	7.5153E-07	56583	160511_QHF_FH_JSI9i_2	151.78	135.89			1.0071	1.0853	21.815	8	1	Median	1.0894	0.90339	41.212	2	1	Median	0.82473	0.99963	18.969	2	0	Median	1.1069	1.0853	4.5809	2	0	Median	0.96499	1.0588	29.206	2	0	Median	678230000	322820000	355410000	143150000	68812000	74336000	133280000	75526000	57757000	179480000	86749000	92728000	222320000	91731000	130590000	23690	3614	22442	148065;148066;148067;148068;148069;148070;148071;148072	200114;200115;200116;200117;200118;200119;200120;200121;200122;200123;200124;200125;200126;200127;200128	200123			15	
IEAITSSGQMGSFIR	0	Unmodified	1595.7977	0.79774172	2855	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	66.872	66.297	2	4.9153E-05	57146	160511_QHF_FH_JSI12i_2	78.653	52.138			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8612300	0	8612300	0	0	0	0	0	0	8612300	0	8612300	0	0	0	23691	2855	22443	148073;148074;148075;148076	200129;200130;200131;200132	200130			4	
IEAIVKNYPEGHK	2	Unmodified	1496.7987	0.798728	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		102.28	102.2	3	0.054295	90065	160511_QHF_FH_JSI9i_2	17.587	11.744			1.0777	1.087	35.739	3	0	Median	0.95092	0.82368	NaN	1	0	Median	1.3458	1.674	NaN	1	0	Median	1.0777	1.087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	739250000	416270000	322980000	186550000	94273000	92279000	215840000	121990000	93851000	336860000	200010000	136850000	0	0	0	23692	1158	22444	148077;148078;148079	200133	200133			1	
IEALQADNDFTNER	0	Unmodified	1634.7536	0.7536283	2590	Q14BN4	SLMAP	Sarcolemmal membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	49.035	48.267	2	3.5344E-07	43815	160511_QHF_FH_JSI12i_1	89.301	78.204			1.0346	1.0964	11.792	3	3	Median	1.0998	0.91638	NaN	1	1	Median	0.98604	1.1445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.0964	NaN	1	1	Median	63745000	37712000	26033000	23118000	10973000	12145000	17089000	11746000	5343500	0	0	0	23537000	14993000	8544200	23693	2590	22445	148080;148081;148082;148083;148084	200134;200135;200136;200137;200138	200136			5	
IEALQNHENESVYK	1	Unmodified	1672.8057	0.80566387	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.51	1	9	2				1	3		3	5	4	4	32.365	29.22	2;3	3.6822E-06	24687	160511_QHF_FH_JSI12i_2	125.22	118.38			0.86045	0.90838	39.086	16	6	Median	0.98013	0.84367	47.531	3	2	Median	0.83865	1.0283	39.679	5	3	Median	0.86665	0.87567	49.629	4	1	Median	0.73713	0.81885	17.243	4	0	Linear	2677500000	1458400000	1219100000	434450000	236430000	198020000	734970000	432040000	302930000	907080000	508690000	398390000	601010000	281220000	319790000	23694	1766	22446	148085;148086;148087;148088;148089;148090;148091;148092;148093;148094;148095;148096;148097;148098;148099;148100	200139;200140;200141;200142;200143;200144;200145;200146;200147;200148;200149;200150;200151;200152;200153;200154;200155;200156	200142			18	
IEALSHCPTYVLMR	0	Oxidation (M)	1704.8327	0.83274702	5786				yes	yes	0	0	1	0				By MS/MS	1	0	1												1	58.756	58.099	2	0.018939	52852	160511_QHF_FH_JSI12i_1	63.283	29.417	+		1.7612	1.8807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7612	1.8807	NaN	1	1	Median	37347000	28738000	8608800	0	0	0	0	0	0	0	0	0	37347000	28738000	8608800	23695	5786	22447	148101	200157	200157		2747	1	
IEANAGQLYLTGVVVLHK	1	Unmodified	1924.0782	0.078197327	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9	7		1							1	1			1	82.984	78.137	3	3.2883E-05	39824	160513_QHF_FH_JSI9Kac_6	76.301	66.513			0.67889	0.65894	4.8245	2	1	Median	0.75485	0.63684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61056	0.68181	NaN	1	1	Median	156010000	79575000	76439000	127030000	62420000	64614000	0	0	0	0	0	0	28980000	17155000	11825000	23696	327	22448	148102;148103	200158;200159	200159			2	
IEANEALVK	1	Unmodified	985.54441	0.5444108	1339	P30049	ATP5D	ATP synthase subunit delta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	2	2	2	35.653	31.326	2	2.756E-05	27434	160511_QHF_FH_JSI9i_1	103.55	67.666			0.89796	0.92689	20.854	7	0	Median	1.1681	0.92689	NaN	1	0	Median	0.78007	0.91364	2.5591	2	0	Median	1.2322	1.2047	38.713	2	0	Median	0.85788	0.9316	9.4771	2	0	Median	4881800000	2319400000	2562400000	1164300000	498680000	665570000	1358600000	758770000	599790000	1231700000	541930000	689730000	1127300000	520050000	607290000	23697	1339	22449	148104;148105;148106;148107;148108;148109;148110	200160;200161;200162;200163;200164;200165;200166;200167;200168;200169;200170;200171;200172	200170			13	
IEANVNSVVTEEK	1	Unmodified	1430.7253	0.72528829	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		42.993	42.606	2	0.00049147	38278	160511_QHF_FH_JSI10i_1	90.614	65.776			0.80676	0.83598	18.04	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84233	0.94973	NaN	1	1	Median	0.77269	0.73586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71923000	36729000	35193000	0	0	0	33772000	14538000	19234000	38151000	22191000	15959000	0	0	0	23698	3653	22450	148111;148112;148113	200173;200174;200175	200175			3	
IEAVEMHLTR	0	Unmodified	1197.6176	0.61759251	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.652	39.691	3	0.00035987	33905	160511_QHF_FH_JSI12i_2	57.836	49.835			0.98641	1.0452	8.8498	4	0	Median	1.3428	1.1378	NaN	1	0	Median	0.75549	0.92269	NaN	1	0	Median	1.0395	1.0704	NaN	1	0	Median	0.93604	1.0206	NaN	1	0	Median	157670000	83839000	73827000	21928000	10407000	11521000	39161000	21207000	17954000	58275000	29822000	28453000	38301000	22402000	15899000	23699	5376	22451	148114;148115;148116;148117	200176;200177;200178;200179	200176			4	
IEDFGLHFVR	0	Unmodified	1231.635	0.63495714	4409	Q9BT40	INPP5K	Inositol polyphosphate 5-phosphatase K	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.252	65.105	3	0.00064553	56311	160511_QHF_FH_JSI12i_3	64.297	54.865			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23700	4409	22452	148118;148119	200180;200181	200181			2	
IEDFLER	0	Unmodified	920.46035	0.46034682	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.91	4	3	2				2	2		3	3	4	3	48.886	44.94	2	0.0034484	40601	160511_QHF_FH_JSI11i_1	104.45	63.762			0.97729	1.002	10.288	13	1	Median	1.0963	0.90622	16.181	3	0	Plateau	0.82937	0.94402	14.633	3	1	Median	1.0108	0.97846	5.4653	4	0	Median	0.85436	0.8883	8.593	3	0	Plateau	7853000000	3904600000	3948500000	1897900000	820080000	1077800000	2355500000	1174100000	1181400000	3039900000	1648300000	1391600000	559740000	262120000	297620000	23701	1593	22453	148120;148121;148122;148123;148124;148125;148126;148127;148128;148129;148130;148131;148132	200182;200183;200184;200185;200186;200187;200188;200189;200190;200191;200192;200193;200194	200183			13	
IEDFLERR	0	Unmodified	1076.5615	0.56145784	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							2	4	3	3	36.626	35.876	2;3	8.0211E-05	29973	160511_QHF_FH_JSI10i_3	101.43	71.958			1.0462	1.0828	17.143	12	1	Median	1.3882	1.1816	11.291	2	0	Median	0.82539	0.99087	22.493	4	1	Median	1.1923	1.1131	13.811	3	0	Median	1.1072	1.1302	17.201	3	0	Plateau	4780900000	2167600000	2613300000	938480000	388270000	550210000	1718300000	842280000	876020000	1525500000	626060000	899410000	598640000	310950000	287690000	23702	1593	22454	148133;148134;148135;148136;148137;148138;148139;148140;148141;148142;148143;148144	200195;200196;200197;200198;200199;200200;200201;200202;200203;200204;200205;200206;200207;200208;200209;200210;200211;200212;200213;200214;200215;200216;200217	200201			23	
IEDGNDFGVAIQEK	1	Unmodified	1533.7311	0.73110195	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.943	4		2							1	3	1	1	53.662	52.819	2	0.00011657	47526	160511_QHF_FH_JSI10i_1	127.79	102.36			0.95891	0.99549	9.3647	5	2	Median	1.4322	1.1697	NaN	1	1	Median	0.80489	0.9539	7.3222	2	1	Median	1.0104	0.9714	NaN	1	0	Median	0.95891	0.99549	NaN	1	0	Median	2140700000	1087500000	1053200000	443090000	191380000	251710000	598120000	352690000	245420000	587020000	267390000	319630000	512510000	276040000	236460000	23703	5391	22455	148145;148146;148147;148148;148149;148150	200218;200219;200220;200221;200222;200223;200224;200225;200226	200224			9	
IEDGNNFGVAVQEK	1	Unmodified	1518.7314	0.7314363	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	2	1	1	44.013	43.173	2	1.8052E-21	39157	160511_QHF_FH_JSI11i_1	176.25	118.66			0.94126	0.90806	19.683	5	1	Median	0.95118	0.78252	NaN	1	0	Median	0.64295	0.75589	25.938	2	1	Median	1.0575	1.0181	NaN	1	0	Median	0.94126	0.98177	NaN	1	0	Median	2379500000	1193000000	1186500000	464240000	222710000	241540000	732130000	411940000	320190000	608960000	306290000	302670000	574130000	252070000	322060000	23704	2244	22456	148151;148152;148153;148154;148155	200227;200228;200229;200230;200231;200232;200233;200234;200235;200236;200237;200238;200239;200240	200230			14	
IEDIETFK	1	Unmodified	993.50188	0.50187728	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	42.398	41.931	2	0.053269	38135	160511_QHF_FH_JSI12i_1	36.557	17.774			1.4633	1.4644	10.538	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5034	1.7115	NaN	1	0	Median	1.4633	1.4002	NaN	1	0	Median	1.3974	1.4644	NaN	1	0	Median	80407000	34687000	45720000	0	0	0	26299000	10081000	16218000	32987000	14570000	18417000	21121000	10036000	11085000	23705	2791	22457	148156;148157;148158	200241	200241			1	
IEDILEVIEK	1	Unmodified	1199.6649	0.66491986	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		88.073	87.703	2	0.0014293	77226	160511_QHF_FH_JSI11i_2	77.192	44.837			0.97212	0.94719	14.769	4	1	Median	1.1015	0.94155	NaN	1	0	Median	0.92965	1.047	NaN	1	0	Median	0.87642	0.83994	17.838	2	1	Median	NaN	NaN	NaN	0	0	Median	125290000	65430000	59862000	28784000	12731000	16054000	30182000	14783000	15398000	66326000	37916000	28410000	0	0	0	23706	2757	22458	148159;148160;148161;148162	200242;200243;200244;200245;200246;200247;200248	200248			7	
IEDLALQNQIR	0	Unmodified	1311.7147	0.71466402	4190	Q96P47	AGAP3	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.771	51.362	2	0.010097	46240	160511_QHF_FH_JSI10i_1	47.732	20.143			0.28733	0.3313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.28733	0.3313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27043000	18690000	8352300	0	0	0	27043000	18690000	8352300	0	0	0	0	0	0	23707	4190	22459	148163	200249	200249			1	
IEDLLQSEENK	1	Unmodified	1316.646	0.64597533	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	43.38	42.902	2	0.00027694	38357	160511_QHF_FH_JSI10i_1	77.533	11.814			0.75965	0.8872	28.715	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75965	0.8872	NaN	1	0	Median	0.541	0.52694	NaN	1	1	Median	0.79998	0.84289	NaN	1	0	Median	453530000	261630000	191900000	0	0	0	169990000	110420000	59569000	142930000	79984000	62946000	140610000	71222000	69384000	23708	695	22460	148164;148165;148166	200250;200251;200252	200252			3	
IEDLSQEAQLAAAEK	1	Unmodified	1614.8101	0.81008055	4567	Q9BZK3	NACAP1	Putative nascent polypeptide-associated complex subunit alpha-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									1	2	5	4	53.036	52.471	2;3	1.1874E-34	50100	160511_QHF_FH_JSI11i_1	159.5	112.31			0.83527	0.82799	20.624	10	4	Median	1.1282	0.93115	NaN	1	0	Median	0.76228	0.89336	25.678	2	0	Median	0.7308	0.70174	15.726	4	3	Median	1.0593	1.0888	15.948	3	1	Plateau	507970000	287230000	220730000	46441000	21646000	24795000	142010000	91154000	50852000	187300000	106020000	81279000	132220000	68410000	63807000	23709	4567	22461	148167;148168;148169;148170;148171;148172;148173;148174;148175;148176;148177;148178	200253;200254;200255;200256;200257;200258;200259;200260;200261;200262;200263;200264;200265;200266;200267	200258			15	
IEDLSQQAQLAAAEK	1	Unmodified	1613.8261	0.82606496	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.26	8	2	3		1	5				3	4	5	7	52.906	49.189	2;3	1.4526E-116	44726	160511_QHF_FH_JSI12i_1	270.27	224.9			0.92163	0.93516	14.185	17	2	Median	1.2259	1.0263	25.821	3	1	Median	0.78366	0.91868	3.8479	4	1	Median	0.95161	0.93274	2.2899	4	0	Median	0.97296	1.0437	14.861	6	0	Median	15529000000	7271900000	8257000000	4020100000	1741000000	2279100000	3677100000	1699300000	1977800000	4265700000	1902900000	2362800000	3566000000	1928700000	1637300000	23710	87	22462	148179;148180;148181;148182;148183;148184;148185;148186;148187;148188;148189;148190;148191;148192;148193;148194;148195;148196;148197	200268;200269;200270;200271;200272;200273;200274;200275;200276;200277;200278;200279;200280;200281;200282;200283;200284;200285;200286;200287;200288;200289;200290;200291;200292;200293;200294;200295;200296;200297;200298;200299;200300;200301;200302;200303;200304;200305;200306;200307;200308;200309	200281			42	
IEDLSQQAQLAAAEKFK	2	Acetyl (K)	1931	6.5851002E-06	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	1	0	0	1		By MS/MS		By MS/MS	13.5	0.5						1	1				1		1	80.879	71.474	3	0.00033186	35871	160513_QHF_FH_JSI12Kac_3	85.563	64.316			0.72606	0.86403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72606	0.86403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5190200	3757600	1432500	0	0	0	3504200	2071700	1432500	0	0	0	1686000	1686000	0	23711	87	22463	148198;148199	200310;200311	200311	57		2	
IEDPNQFVPLNTNPNEVLEK	1	Unmodified	2309.1539	0.15394104	5275	Q9UEY8	ADD3	Gamma-adducin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		83.888	83.523	3	0.00037391	76104	160511_QHF_FH_JSI11i_1	55.206	40.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23712	5275	22464	148200	200312	200312			1	
IEDPQIQAHWSNINDVYESSVK	1	Unmodified	2571.2241	0.22414587	5027	Q9NVC6	MED17	Mediator of RNA polymerase II transcription subunit 17	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	74.058	72.782	3	0.0031107	62857	160511_QHF_FH_JSI12i_2	38.933	25.478			1.0721	1.1361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0721	1.1361	NaN	1	1	Median	14094000	8751100	5342500	0	0	0	0	0	0	0	0	0	14094000	8751100	5342500	23713	5027	22465	148201	200313	200313			1	
IEDSEPHIPLIDDTDAEDDAPTK	1	Unmodified	2535.15	0.15003746	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	5										1	2	2	71.153	70.758	3	1.495E-09	64294	160511_QHF_FH_JSI12i_1	75.797	67.9			1.1252	1.1618	21.398	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68833	0.80384	NaN	1	0	Median	1.2107	1.1618	NaN	1	0	Median	1.1252	1.1672	NaN	1	0	Median	172360000	83424000	88938000	0	0	0	57019000	32123000	24896000	61819000	25325000	36494000	53524000	25976000	27548000	23714	1168	22466	148202;148203;148204;148205;148206	200314;200315;200316;200317	200316			3	
IEDSTGLNRPGPAPLSSR	0	Unmodified	1865.9595	0.95953875	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		38.103	37.108	3	0.0087449	32635	160511_QHF_FH_JSI10i_2	41.554	29.863			0.8237	0.94472	18.436	5	0	Median	1.4014	1.164	13.367	2	0	Median	0.78472	0.92723	2.6414	2	0	Median	0.8237	0.7801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	264230000	131230000	133000000	122820000	53316000	69507000	122120000	68697000	53427000	19285000	9216900	10068000	0	0	0	23715	4352	22467	148207;148208;148209;148210;148211	200318;200319;200320;200321;200322	200322			5	
IEDTVFHVFDK	1	Unmodified	1348.6663	0.66631685	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		67.799	67.035	3	4.2111E-06	58499	160511_QHF_FH_JSI11i_2	89.301	73.928			0.88516	0.90928	7.312	3	0	Median	1.1113	0.96754	NaN	1	0	Median	0.67774	0.83635	NaN	1	0	Median	0.88516	0.90928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	296450000	163440000	133010000	56803000	21610000	35194000	81789000	48146000	33644000	157860000	93689000	64173000	0	0	0	23716	5523	22468	148212;148213;148214	200323;200324;200325;200326	200324			3	
IEDVGSDEEDDSGK	1	Unmodified	1493.6005	0.60054128	898;2870	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	19.261	15.937	2	2.2449E-07	13565	160511_QHF_FH_JSI9i_1	140.14	121.83			1.0356	1.1173	15.065	7	0	Median	1.0103	0.82358	NaN	1	0	Median	0.89855	1.044	13.608	2	0	Median	1.2613	1.2311	7.8795	2	0	Median	1.0418	1.1087	1.0909	2	0	Median	1036200000	550700000	485480000	274760000	147030000	127730000	198570000	122250000	76325000	271510000	129880000	141630000	291350000	151550000	139800000	23717	898;2870	22469	148215;148216;148217;148218;148219;148220;148221	200327;200328;200329;200330;200331;200332;200333;200334;200335;200336;200337	200335			11	
IEDVPAPSTSADK	1	Unmodified	1328.646	0.64597533	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	6									2	2	2		30.775	30.109	2	0.0015211	26919	160511_QHF_FH_JSI10i_1	62.408	40.944			0.8123	0.77841	14.396	5	4	Median	0.88029	0.71975	11.082	2	2	Median	0.71685	0.83592	NaN	1	0	Median	0.71249	0.69387	21.612	2	2	Median	NaN	NaN	NaN	0	0	Median	685080000	396250000	288820000	248900000	130340000	118560000	139690000	81533000	58159000	296480000	184380000	112100000	0	0	0	23718	1649	22470	148222;148223;148224;148225;148226;148227	200338;200339;200340;200341;200342;200343;200344	200341			7	
IEDVPAPSTSADKVESLDVDSEAK	2	Unmodified	2501.2021	0.20207303	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.402	58.752	3	4.9869E-06	53389	160511_QHF_FH_JSI11i_1	62.237	48.781			1.0357	0.93382	16.273	4	0	Median	1.1143	0.91801	NaN	1	0	Median	0.74942	0.87801	NaN	1	0	Median	0.96263	0.94991	NaN	1	0	Median	1.2464	1.2586	NaN	1	0	Median	702190000	352110000	350080000	169180000	82744000	86440000	157260000	90644000	66611000	195840000	91318000	104520000	179920000	87407000	92509000	23719	1649	22471	148228;148229;148230;148231	200345;200346;200347;200348	200345			3	
IEDVTPIPSDSTR	0	Unmodified	1428.7096	0.70963822	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.42	9	1	2		3	4				3	5	6	5	46.238	42.408	2;3	1.5955E-53	38294	160511_QHF_FH_JSI10i_1	223.78	212.29			0.94261	0.89511	17.482	14	1	Median	1.0247	0.83299	6.4261	2	0	Median	0.82409	0.95333	16.824	5	0	Median	0.95772	0.94297	14.101	4	1	Median	0.77846	0.83363	24.212	3	0	Median	7058200000	3887500000	3170700000	1489700000	783300000	706380000	1865700000	1066700000	798990000	2081000000	1132900000	948080000	1621800000	904580000	717200000	23720	1991	22472	148232;148233;148234;148235;148236;148237;148238;148239;148240;148241;148242;148243;148244;148245;148246;148247;148248;148249;148250	200349;200350;200351;200352;200353;200354;200355;200356;200357;200358;200359;200360;200361;200362;200363;200364;200365;200366;200367;200368;200369;200370;200371;200372;200373;200374;200375;200376;200377;200378	200365			30	
IEDVTPIPSDSTRR	0	Unmodified	1584.8107	0.81074925	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	6	8					2			4	4	5	3	37.64	35.644	2;3	3.2167E-40	30524	160511_QHF_FH_JSI11i_2	227.94	181.94			0.93605	0.96944	17.813	16	0	Median	1.4889	1.2619	11.818	4	0	Median	0.70923	0.84872	8.6045	4	0	Median	0.99625	0.98038	9.9445	5	0	Median	0.85277	0.96267	15.536	3	0	Median	3090300000	1460500000	1629800000	831160000	296670000	534480000	471310000	281250000	190060000	1357000000	653410000	703580000	430820000	229170000	201660000	23721	1991	22473	148251;148252;148253;148254;148255;148256;148257;148258;148259;148260;148261;148262;148263;148264;148265;148266	200379;200380;200381;200382;200383;200384;200385;200386;200387;200388;200389;200390;200391;200392;200393;200394;200395;200396;200397;200398;200399	200396			21	
IEEAMDGSETPQLFTVLPEK	1	Unmodified	2233.0824	0.082415586	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	90.263	89.819	3	2.1622E-05	81899	160511_QHF_FH_JSI12i_1	64.83	60.026			0.91486	0.73114	32.619	3	1	Plateau	0.91486	0.73114	NaN	1	0	Median	0.40224	0.44664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7893	0.82745	NaN	1	0	Median	66400000	36595000	29805000	26319000	13137000	13182000	19077000	12405000	6671700	0	0	0	21004000	11053000	9951500	23722	2412	22474	148267;148268;148269	200400;200401;200402	200400			3	
IEEAVNAFK	1	Unmodified	1019.5288	0.52876073	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.097	36.831	2	2.4026E-05	33257	160511_QHF_FH_JSI12i_1	101.54	51.415			0.96922	0.94171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96922	0.94171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42854000	17549000	25305000	0	0	0	0	0	0	42854000	17549000	25305000	0	0	0	23723	2307	22475	148270;148271	200403;200404	200404			2	
IEEDFPHIR	0	Unmodified	1154.572	0.57202253	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	42.994	42.054	3	0.0044587	36056	160511_QHF_FH_JSI11i_2	36.424	30.192			0.86533	1.054	6.7723	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77401	0.95457	NaN	1	0	Median	1.0458	1.054	NaN	1	0	Median	0.86533	0.92598	NaN	1	0	Median	160220000	89262000	70962000	0	0	0	46881000	27745000	19137000	71702000	36758000	34944000	41641000	24759000	16882000	23724	4988	22476	148272;148273;148274	200405	200405			1	
IEEDSEVLMMIK	1	Unmodified	1435.6939	0.6938535	458	O60888	CUTA	Protein CutA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	77.805	77.235	2	0.00031094	70177	160511_QHF_FH_JSI11i_1	73.499	56.474			1.0542	1.0821	35.055	4	2	Median	2.1903	1.8352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82512	0.81895	NaN	1	0	Median	1.0542	1.0821	16.591	2	2	Median	448050000	196610000	251440000	78872000	14596000	64276000	0	0	0	134350000	66382000	67972000	234820000	115630000	119200000	23725	458	22477	148275;148276;148277;148278;148279	200406;200407;200408;200409;200410;200411	200406			6	
IEEELGSK	1	Unmodified	903.45493	0.45492709	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.75	4	4	3		1	2	3	1		2	4	7	5	19.377	15.942	2	0.00038974	13886	160511_QHF_FH_JSI11i_1	109.86	23.75			0.93032	0.93403	28.905	18	2	Median	1.1376	1.0394	18.12	2	1	Median	0.81133	0.9389	54.986	4	1	Median	0.99439	0.9541	16.931	7	0	Median	0.78554	0.85274	20.53	5	0	Median	60894000000	26903000000	33991000000	15622000000	5802200000	9820000000	16274000000	7391900000	8882500000	14357000000	6566900000	7789900000	14640000000	7142000000	7498400000	23726	854	22478	148280;148281;148282;148283;148284;148285;148286;148287;148288;148289;148290;148291;148292;148293;148294;148295;148296;148297	200412;200413;200414;200415;200416;200417;200418;200419;200420;200421;200422;200423;200424;200425;200426;200427;200428;200429;200430;200431;200432;200433;200434;200435;200436;200437;200438;200439;200440;200441;200442	200415			31	
IEEFLEAVLCPPRYPK	1	Unmodified	1960.0128	0.012819878	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									3	1	92.175	92.164	3	6.1891E-05	82356	160511_QHF_FH_JSI11i_3	89.506	73.2			1.0108	0.96497	105.29	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89288	0.81561	128.46	3	2	Median	1.1443	1.1417	NaN	1	0	Median	157250000	79449000	77803000	0	0	0	0	0	0	96817000	48256000	48561000	60435000	31193000	29242000	23727	119	22479	148298;148299;148300;148301	200443;200444;200445;200446	200444			4	
IEEFVYEK	1	Unmodified	1055.5175	0.51752734	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.565	41.221	2	0.019499	37459	160511_QHF_FH_JSI12i_1	45.68	18.718			2.6055	2.5406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6055	2.5406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90339000	26365000	63974000	0	0	0	0	0	0	90339000	26365000	63974000	0	0	0	23728	5559	22480	148302;148303	200447;200448	200448			2	
IEEGHIGVYYR	0	Unmodified	1334.6619	0.66190017	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	45.364	35.9	3	0.058487	18723	160513_QHF_FH_JSI12Kac_6	14.876	11.344			0.83565	0.77575	14.529	3	0	Plateau	0.81908	0.69748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85297	0.86279	NaN	1	0	Median	0.83565	0.92084	NaN	1	0	Median	19793000	11416000	8377900	8123400	4487700	3635700	0	0	0	7341100	4495000	2846000	4329000	2432800	1896200	23729	622	22481	148304;148305;148306	200449	200449			1	
IEEGLDQINK	1	Unmodified	1157.5928	0.59281755	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.336	34.732	2	7.0848E-05	30533	160511_QHF_FH_JSI9i_1	89.047	22.974			1.1622	1.0876	14.898	4	0	Median	1.3223	1.093	NaN	1	0	Median	1.215	1.4551	NaN	1	0	Median	1.1118	1.0822	NaN	1	0	Median	1.0482	1.0675	NaN	1	0	Median	491050000	227670000	263380000	113320000	48694000	64628000	125120000	77335000	47783000	123860000	48644000	75216000	128750000	52998000	75750000	23730	101	22482	148307;148308;148309;148310	200450;200451;200452	200452			3	
IEEIPLDQVDIDK	1	Unmodified	1525.7876	0.78755419	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		71.967	71.47	2	5.5657E-05	63619	160511_QHF_FH_JSI9i_1	109.24	75.37			0.99532	0.76443	14.633	3	2	Plateau	0.87834	0.72352	NaN	1	0	Median	0.65319	0.76443	NaN	1	1	Median	0.99532	0.9539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	315110000	146060000	169050000	71269000	29292000	41976000	92388000	52064000	40324000	151450000	64701000	86750000	0	0	0	23731	3922	22483	148311;148312;148313	200453;200454;200455;200456	200456			4	
IEEIPLDQVDIDKENEMLVTVAHFHK	2	Unmodified	3061.543	0.54303717	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	96.709	96.725	5	0.0096147	83773	160511_QHF_FH_JSI12i_3	31.83	29.052			1.0095	1.0142	53.578	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0095	1.0142	53.578	2	2	Median	46127000	29588000	16539000	0	0	0	0	0	0	0	0	0	46127000	29588000	16539000	23732	3922	22484	148314;148315	200457;200458	200457			2	
IEELDQENEAALENGIK	1	Unmodified	1913.9218	0.92181584	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	59.775	59.13	2;3	2.092E-30	53567	160511_QHF_FH_JSI11i_1	190.86	146.67			1.0003	1.0279	16.598	8	1	Median	0.91639	0.75422	16.735	2	1	Median	0.87044	1.0082	2.7356	2	0	Median	1.1008	1.0642	4.8965	2	0	Median	1.0132	1.0556	3.5092	2	0	Median	888840000	469270000	419570000	196950000	103580000	93369000	268760000	162320000	106430000	217510000	96843000	120660000	205630000	106530000	99102000	23733	1556	22485	148316;148317;148318;148319;148320;148321;148322;148323	200459;200460;200461;200462;200463;200464;200465;200466;200467;200468;200469;200470	200462			12	
IEELGSELK	1	Unmodified	1016.539	0.53899107	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	38.072	37.455	2	0.024179	33932	160511_QHF_FH_JSI12i_1	41.448	16.525			1.2779	0.99974	21.91	4	0	Linear	2.1461	1.7829	NaN	1	0	Median	1.0043	1.176	NaN	1	0	Median	1.1471	1.1014	NaN	1	0	Median	1.4237	1.4611	NaN	1	0	Median	351550000	150510000	201040000	77043000	30268000	46775000	87954000	42186000	45768000	105590000	46288000	59306000	80962000	31772000	49189000	23734	2510	22486	148324;148325;148326;148327	200471;200472;200473;200474	200471			4	
IEEMAEQER	0	Unmodified	1133.5023	0.50228799	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	14.787	14.333	2	0.016245	11833	160511_QHF_FH_JSI10i_1	43.272	15.176			1.043	1.0227	18.58	4	0	Median	1.1603	0.95685	NaN	1	0	Median	0.93752	1.0931	NaN	1	0	Median	1.282	1.2635	NaN	1	0	Median	0.78265	0.81772	NaN	1	0	Median	654870000	344780000	310090000	156820000	73538000	83287000	148480000	78456000	70025000	194720000	94223000	100490000	154850000	98567000	56282000	23735	3765	22487	148328;148329;148330;148331	200475	200475			1	
IEEVPELPLVVEDK	1	Unmodified	1607.8658	0.86580451	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	87.109	86.659	2;3	1.1021E-14	79091	160511_QHF_FH_JSI11i_1	160.15	122.06			0.93127	0.91858	7.037	8	0	Median	1.0716	0.87036	6.4075	2	0	Median	0.81607	0.9648	1.4691	2	0	Median	0.93127	0.90261	3.6972	2	0	Median	0.86452	0.90664	13.421	2	0	Median	4054000000	2130800000	1923200000	956580000	494480000	462100000	995680000	553680000	442000000	1313300000	674360000	638990000	788380000	408260000	380110000	23736	1457	22488	148332;148333;148334;148335;148336;148337;148338;148339;148340	200476;200477;200478;200479;200480;200481;200482;200483;200484;200485;200486;200487;200488;200489;200490;200491;200492;200493;200494;200495;200496;200497;200498;200499;200500;200501;200502;200503;200504;200505;200506;200507	200478			32	
IEEVPELPLVVEDKVEGYK	2	Unmodified	2184.1566	0.15656681	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	91.314	90.747	3	0.00010916	78494	160511_QHF_FH_JSI12i_2	61.096	51.999			0.9619	1.0573	23.959	4	3	Median	NaN	NaN	NaN	0	0	Median	0.7017	0.85709	31.538	2	2	Median	1.0555	1.0436	NaN	1	1	Median	1.1113	1.1753	NaN	1	0	Median	87941000	50471000	37470000	0	0	0	37524000	24886000	12638000	26563000	13945000	12618000	23854000	11640000	12214000	23737	1457	22489	148341;148342;148343;148344;148345	200508;200509;200510;200511;200512;200513	200509			6	
IEEVRDAMENEMR	0	Unmodified	1620.7236	0.7235905	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	39.888	39.219	2;3	0.00094154	33537	160511_QHF_FH_JSI12i_3	52.265	47.361			0.17342	0.17205	182.32	5	5	Median	4.671	4.1236	NaN	1	1	Median	0.059762	0.073879	NaN	1	1	Median	0.67431	0.66424	191.04	2	2	Median	0.13908	0.15229	NaN	1	1	Median	405500000	295630000	109870000	32621000	6569600	26051000	28534000	26209000	2325100	253590000	190280000	63309000	90750000	72564000	18187000	23738	2780	22490	148346;148347;148348;148349;148350;148351;148352	200514;200515;200516;200517;200518;200519;200520	200520			7	
IEEVSAR	0	Unmodified	802.41848	0.418482	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	10.58	10.271	2	0.035999	8044	160511_QHF_FH_JSI10i_1	49.358	15.62			0.68428	0.74627	8.399	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68482	0.79194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68374	0.70324	NaN	1	0	Median	199090000	133140000	65949000	0	0	0	99172000	65343000	33829000	0	0	0	99922000	67802000	32120000	23739	1148	22491	148353;148354	200521	200521			1	
IEEVSDTSSLQPQASLK	1	Unmodified	1830.9211	0.92108756	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.67	50.996	2	3.0839E-12	46305	160511_QHF_FH_JSI12i_1	178.15	112.65			0.70865	0.77783	11.503	4	2	Median	1.0178	0.84065	NaN	1	0	Median	0.6894	0.81583	NaN	1	0	Median	0.6773	0.65111	NaN	1	1	Median	0.72845	0.7416	NaN	1	1	Median	221370000	131480000	89895000	58002000	28126000	29876000	55849000	37637000	18212000	51869000	32992000	18877000	55654000	32724000	22930000	23740	4753	22492	148355;148356;148357;148358	200522;200523;200524;200525	200523			4	
IEEYISK	1	Unmodified	880.4542	0.45419881	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.845	22.707	2	0.056861	19698	160511_QHF_FH_JSI11i_1	46.426	17.914			0.67495	0.65399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67495	0.65399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98144000	54009000	44135000	0	0	0	0	0	0	98144000	54009000	44135000	0	0	0	23741	3803	22493	148359	200526	200526			1	
IEFAVAEGAK	1	Unmodified	1033.5444	0.5444108	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			46.999	46.036	2	0.0078466	40485	160511_QHF_FH_JSI10i_2	52.278	1.6716			0.75272	0.9442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75272	0.9442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41304000	19283000	22020000	0	0	0	41304000	19283000	22020000	0	0	0	0	0	0	23742	2732	22494	148360;148361	200527;200528	200528			2	
IEFEGQPVDFVDPNK	1	Unmodified	1732.8308	0.83081599	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	78.303	77.829	2;3	6.0175E-30	69261	160511_QHF_FH_JSI9i_1	214.81	179.92			0.97211	0.95534	5.3205	8	0	Median	1.1161	0.90857	0.70565	2	0	Median	0.84656	0.99494	5.2104	2	0	Median	0.97723	0.94636	0.80203	2	0	Median	0.95966	1.0233	1.6402	2	0	Median	4238400000	2090800000	2147700000	1026700000	417930000	608720000	1061100000	581690000	479420000	1186200000	627560000	558610000	964480000	463580000	500900000	23743	1372	22495	148362;148363;148364;148365;148366;148367;148368;148369	200529;200530;200531;200532;200533;200534;200535;200536;200537;200538;200539;200540;200541;200542;200543;200544;200545;200546;200547;200548;200549;200550;200551;200552;200553;200554;200555;200556;200557;200558	200552			30	
IEFEHGTTSGK	1	Unmodified	1204.5724	0.57241646	5044	Q9NVQ4	FAIM	Fas apoptotic inhibitory molecule 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		17.636	16.885	2;3	0.010764	13602	160511_QHF_FH_JSI11i_2	46.462	25.942			0.51384	0.61851	13.03	2	2	Median	NaN	NaN	NaN	0	0	Median	0.51384	0.61851	13.03	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70213000	43182000	27031000	0	0	0	70213000	43182000	27031000	0	0	0	0	0	0	23744	5044	22496	148370;148371;148372	200559;200560;200561	200559			3	
IEFGVDEVIEPSDTLPR	0	Unmodified	1914.9575	0.95747307	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			88.451	88.348	2	3.0893E-05	80199	160511_QHF_FH_JSI10i_1	116.51	93.135			1.174	1.3304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.174	1.3304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23323000	6256400	17067000	0	0	0	23323000	6256400	17067000	0	0	0	0	0	0	23745	2567	22497	148373	200562	200562			1	
IEFGVDVTTK	1	Unmodified	1107.5812	0.58119023	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	57.725	56.935	2	0.00097395	51298	160511_QHF_FH_JSI10i_1	68.657	41.403			0.98317	0.97932	9.8363	5	1	Median	1.1044	0.90724	NaN	1	0	Median	0.80318	0.97932	NaN	1	0	Median	1.1961	1.1471	NaN	1	0	Median	0.89984	0.97022	9.2034	2	1	Median	815240000	432390000	382860000	71838000	32722000	39116000	284300000	160410000	123890000	156410000	81618000	74793000	302700000	157640000	145060000	23746	1206	22498	148374;148375;148376;148377;148378	200563;200564;200565;200566;200567;200568;200569;200570;200571	200569			9	
IEFHISTDMPAAFK	1	Unmodified	1605.7861	0.78611441	4169	Q96LT9	RNPC3	RNA-binding protein 40	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.03	100.83	2	0.018483	86708	160511_QHF_FH_JSI12i_2	50.292	34.753			0.4242	0.45784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4242	0.45784	NaN	1	1	Median	233510000	173910000	59606000	0	0	0	0	0	0	0	0	0	233510000	173910000	59606000	23747	4169	22499	148379	200572	200572			1	
IEFISTMEGYK	1	Unmodified	1316.6322	0.63223953	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.632	68.735	2	0.0011356	60455	160511_QHF_FH_JSI9i_2	77.379	61.176			0.89297	0.85435	17	4	2	Median	1.0545	0.90288	NaN	1	1	Median	0.63595	0.77903	NaN	1	0	Median	0.79113	0.80843	NaN	1	1	Median	1.0079	1.1364	NaN	1	0	Median	587210000	319960000	267250000	114790000	53203000	61590000	129960000	78064000	51893000	191350000	105850000	85500000	151110000	82841000	68265000	23748	3891	22500	148380;148381;148382;148383	200573;200574;200575;200576	200574			4	
IEFLQSHENQEIYQK	1	Unmodified	1904.9268	0.92684164	439;1767;254	O15131;P52294;O60684	KPNA5;KPNA1;KPNA6	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.07		8	6					1	2	3	5	5	4	53.194	50.735	2;3	8.5539E-30	43740	160511_QHF_FH_JSI11i_2	207.66	175.16			0.85699	0.91748	19.547	16	2	Median	1.1417	0.97545	3.6194	3	0	Median	0.67225	0.78731	26.574	4	1	Median	0.89781	0.8746	21.692	5	0	Median	0.88599	0.92881	8.9356	4	1	Median	3800600000	1880800000	1919800000	353650000	169680000	183960000	661390000	292310000	369080000	1431600000	756060000	675490000	1354000000	662750000	691240000	23749	254;1767;439	22501	148384;148385;148386;148387;148388;148389;148390;148391;148392;148393;148394;148395;148396;148397;148398;148399;148400	200577;200578;200579;200580;200581;200582;200583;200584;200585;200586;200587;200588;200589;200590;200591;200592;200593;200594;200595;200596;200597;200598;200599;200600;200601;200602;200603;200604;200605;200606	200591			30	
IEFSLPDLEGR	0	Unmodified	1274.6507	0.65066678	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	86.668	85.976	2	0.0013743	75679	160511_QHF_FH_JSI11i_2	76.465	47.378			1.3439	1.247	5.3676	3	3	Plateau	1.4137	1.1667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2545	1.2975	NaN	1	1	Median	1.1427	1.247	NaN	1	1	Median	88491000	37848000	50644000	26146000	11500000	14645000	0	0	0	35189000	14402000	20786000	27157000	11945000	15212000	23750	1449	22502	148401;148402;148403	200607;200608;200609	200609			3	
IEFTFER	0	Unmodified	940.46543	0.46543219	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	56.994	56.217	2	0.016662	48207	160511_QHF_FH_JSI12i_3	62.717	50.812			1.1733	1.1064	7.7876	4	0	Median	1.3307	1.1367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1001	1.0769	NaN	1	0	Median	1.0954	1.1696	11.68	2	0	Median	734420000	331900000	402520000	85457000	41135000	44322000	0	0	0	152490000	63972000	88521000	496470000	226790000	269680000	23751	369	22503	148404;148405;148406;148407	200610	200610			1	
IEFYELDK	1	Unmodified	1055.5175	0.51752734	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	60.777	60.043	2	0.020585	53298	160511_QHF_FH_JSI9i_1	45.68	26.898			0.95132	0.88067	16.724	6	1	Median	1.2089	1.0188	22.424	2	0	Median	0.67079	0.8058	12.116	2	0	Median	0.9053	0.88347	NaN	1	0	Median	0.99968	1.05	NaN	1	1	Median	202130000	106300000	95836000	48646000	19465000	29181000	69543000	38925000	30618000	53638000	31063000	22575000	30305000	16842000	13463000	23752	275	22504	148408;148409;148410;148411;148412;148413	200611;200612;200613	200613			3	
IEFYELDKK	2	Unmodified	1183.6125	0.61249036	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.536	49.556	3	0.02378	42660	160511_QHF_FH_JSI11i_2	41.399	31.967			0.90826	0.96183	11.499	4	0	Median	1.117	0.95501	NaN	1	0	Median	0.77954	0.96869	NaN	1	0	Median	1.0582	1.0879	NaN	1	0	Median	0.72428	0.82197	NaN	1	0	Median	234690000	119660000	115030000	28780000	13409000	15371000	60340000	35855000	24485000	93858000	46561000	47298000	51715000	23837000	27878000	23753	275	22505	148414;148415;148416;148417	200614;200615;200616	200616			0	
IEGATLLYIHK	1	Unmodified	1256.7129	0.71287311	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			64.864	55.964	3	0.00086563	29731	160513_QHF_FH_JSI9Kac_6	68.132	52.988			1.4947	1.291	NaN	1	1	Median	1.4947	1.291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34319000	10263000	24057000	34319000	10263000	24057000	0	0	0	0	0	0	0	0	0	23754	3469	22506	148418;148419	200617;200618	200617			2	
IEGDETSTEAATR	0	Unmodified	1378.6212	0.62121715	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.05	13.609	2	0.00016393	11330	160511_QHF_FH_JSI12i_1	83.045	71.894			0.80622	0.8148	5.1169	4	1	Linear	1.1068	0.90429	NaN	1	1	Median	0.74564	0.86713	NaN	1	0	Median	0.84764	0.83501	NaN	1	0	Median	0.76683	0.80243	NaN	1	0	Median	532480000	290090000	242400000	124750000	57351000	67399000	115170000	68273000	46896000	137090000	83275000	53817000	155470000	81188000	74284000	23755	1771	22507	148420;148421;148422;148423	200619;200620;200621;200622;200623	200620			5	
IEGDMIVCAAYAHELPK	1	Unmodified	1915.9172	0.91720493	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	6.07	2	9	3					1	4	3	7	5	4	72.404	69.171	2;3	4.4938E-17	37324	160513_QHF_FH_JSI10Kac_6	141	124.07			1.1205	1.2854	35.969	17	9	Median	1.3114	1.123	28.699	2	1	Median	1.2288	1.4269	28.461	7	6	Median	0.87924	0.8953	59.535	5	2	Median	1.2324	1.3498	7.3919	3	0	Plateau	3459300000	1663200000	1796100000	419360000	178340000	241020000	1237500000	589550000	647920000	1172600000	572840000	599780000	629880000	322520000	307370000	23756	1590	22508	148424;148425;148426;148427;148428;148429;148430;148431;148432;148433;148434;148435;148436;148437;148438;148439;148440;148441;148442	200624;200625;200626;200627;200628;200629;200630;200631;200632;200633;200634;200635;200636;200637;200638;200639;200640;200641;200642;200643;200644;200645;200646;200647;200648;200649;200650;200651	200650			28	
IEGDMIVCAAYAHELPK	1	Oxidation (M)	1931.9121	0.91211956	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.632							2	6	2	1	2	2	5	73.234	62.822	3	3.3794E-05	33407	160513_QHF_FH_JSI11Kac_5	81.317	76.926			1.0271	1.0875	27.355	10	0	Median	0.90511	0.76957	NaN	1	0	Median	0.769	0.90674	4.2858	2	0	Median	0.80189	0.79046	11.183	2	0	Median	1.2602	1.373	6.2582	5	0	Median	258250000	130280000	127970000	8766400	4612000	4154400	13597000	8043400	5553100	133460000	74547000	58912000	102430000	43080000	59351000	23757	1590	22508	148443;148444;148445;148446;148447;148448;148449;148450;148451;148452	200652;200653;200654;200655;200656	200653		1252	5	
IEGDPQGVQQAK	1	Unmodified	1268.6361	0.63607935	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	16.816	16.463	2	5.1432E-05	13839	160511_QHF_FH_JSI10i_1	109.66	74.368			0.67461	0.75637	21.011	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7467	0.87753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60948	0.65195	NaN	1	1	Median	718940000	399890000	319050000	0	0	0	356080000	174750000	181330000	0	0	0	362860000	225140000	137720000	23758	2147	22509	148453;148454;148455	200657;200658;200659;200660	200660			4	
IEGEGSVLQAK	1	Unmodified	1129.5979	0.59790293	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			30.565	29.767	2	0.0027628	26479	160511_QHF_FH_JSI10i_1	56.632	31.073			1.1175	1.111	20.035	2	1	Median	1.5394	1.2801	NaN	1	1	Median	0.81125	0.96427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	342360000	170190000	172170000	162970000	70616000	92350000	179400000	99575000	79822000	0	0	0	0	0	0	23759	2573	22510	148456;148457	200661;200662	200661			2	
IEGEMQVPDVDIRGPK	1	Unmodified	1781.8982	0.89818405	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	60.658	59.838	3	0.0029389	52022	160511_QHF_FH_JSI11i_2	48.112	35.485			1.0171	1.1785	18.661	5	0	Median	1.0171	0.8581	NaN	1	0	Median	0.94504	1.1785	NaN	1	0	Median	1.3443	1.3198	10.356	2	0	Median	0.95323	1.0705	NaN	1	0	Median	374880000	186660000	188220000	53497000	27838000	25659000	88329000	47000000	41328000	137480000	60025000	77450000	95579000	51800000	43779000	23760	2286	22511	148458;148459;148460;148461;148462	200663	200663			1	
IEGFEVLK	1	Unmodified	933.51713	0.51713341	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.971	57.638	2	0.061211	49400	160511_QHF_FH_JSI12i_2	34.808	7.2829			0.83141	0.90694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83141	0.90694	NaN	1	0	Median	38502000	19441000	19061000	0	0	0	0	0	0	0	0	0	38502000	19441000	19061000	23761	2673	22512	148463	200664	200664			1	
IEGFEVLKK	2	Unmodified	1061.6121	0.61209643	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	47.051	46.097	3	0.0014586	39551	160511_QHF_FH_JSI11i_2	62.823	33.35			1.5283	1.7458	27.374	3	3	Median	NaN	NaN	NaN	0	0	Median	1.4619	1.7458	NaN	1	1	Median	1.5283	1.4713	NaN	1	1	Median	2.3347	2.5145	NaN	1	1	Median	49777000	20147000	29629000	0	0	0	18122000	8693700	9428700	17278000	6954400	10324000	14376000	4499200	9876500	23762	2673	22513	148464;148465;148466	200665;200666;200667	200666			3	
IEGLAPK	1	Unmodified	726.42759	0.42759012	3527	Q8N4H5	TOMM5	Mitochondrial import receptor subunit TOM5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	21.834	19.466	2	0.017405	18440	160511_QHF_FH_JSI10i_1	62.714	8.1891			0.53722	1.1307	56.682	4	2	Linear	0.55899	0.45192	NaN	1	1	Median	0.5163	0.6099	NaN	1	1	Median	0.23604	0.23285	NaN	1	0	Median	0.83606	0.88976	NaN	1	0	Median	1017100000	604190000	412860000	231680000	131750000	99934000	258270000	146630000	111640000	104150000	82094000	22058000	422950000	243720000	179230000	23763	3527	22514	148467;148468;148469;148470	200668;200669;200670;200671	200670			4	
IEGLLAAFPK	1	Unmodified	1057.6172	0.61718181	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	77.486	76.623	2	0.0025124	67151	160511_QHF_FH_JSI11i_2	69.825	60.237			1.2433	1.2241	14.686	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98478	1.204	NaN	1	0	Median	1.2433	1.2241	NaN	1	0	Median	0.84431	0.94174	NaN	1	1	Median	244840000	151870000	92966000	0	0	0	35098000	15667000	19431000	64349000	20704000	43645000	145390000	115500000	29890000	23764	1620	22515	148471;148472;148473	200672;200673	200673			2	
IEGLQNLVNLR	0	Unmodified	1267.7248	0.72483478	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			85.997	85.867	2	0.037539	77849	160511_QHF_FH_JSI10i_1	38.293	11.178			0.91176	1.0138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91176	1.0138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19885000	15304000	4581400	0	0	0	19885000	15304000	4581400	0	0	0	0	0	0	23765	2673	22516	148474	200674	200674			1	
IEGLTAEFVNLEFLSLINVGLISVSNLPK	1	Unmodified	3128.7373	0.73730353	3871	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.67	5.56		2	1	1	1				1	3	1	2		105.13	99.1	3	2.8389E-29	58808	160513_QHF_FH_JSI10Kac_6	179.86	169.89			0.97558	0.96084	14.9	4	2	Median	0.89132	0.80599	NaN	1	1	Median	0.75941	0.89303	NaN	1	1	Median	1.1122	1.0788	6.0226	2	0	Median	NaN	NaN	NaN	0	0	Median	141180000	92869000	48311000	4282200	3049600	1232600	118930000	81847000	37082000	17968000	7972400	9996000	0	0	0	23766	3871	22517	148475;148476;148477;148478;148479;148480	200675;200676;200677;200678;200679;200680;200681;200682	200682			8	
IEGTPLETIQK	1	Unmodified	1227.6711	0.67106787	355	O43676	NDUFB3	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.767	47.086	2	0.00014148	42539	160511_QHF_FH_JSI11i_1	83.862	54.7			0.9494	0.95939	2.2308	4	0	Median	1.1241	0.92329	NaN	1	0	Median	0.81363	0.95251	NaN	1	0	Median	0.98284	0.96955	NaN	1	0	Median	0.9171	0.96633	NaN	1	0	Median	871530000	468180000	403340000	220140000	98644000	121500000	195120000	106270000	88849000	232550000	136150000	96399000	223710000	127120000	96596000	23767	355	22518	148481;148482;148483;148484	200683;200684;200685;200686;200687;200688	200684			6	
IEGTQADTR	0	Unmodified	989.47779	0.47778779	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.207	6.9698	2	0.038606	4843	160511_QHF_FH_JSI10i_1	38.303	9.1536			0.66246	0.7851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66246	0.7851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94690000	46253000	48438000	0	0	0	94690000	46253000	48438000	0	0	0	0	0	0	23768	433	22519	148485	200689	200689			1	
IEGVYAR	0	Unmodified	806.42865	0.42865276	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	2	1	2	18.466	17.893	2	0.020766	15206	160511_QHF_FH_JSI10i_2	56.89	20.334			0.96338	1.0087	10.426	6	0	Median	1.0655	0.91319	NaN	1	0	Median	0.85115	1.0087	2.0523	2	0	Median	1.0401	1.0769	NaN	1	0	Median	0.92694	0.96809	19.652	2	0	Median	2665000000	1254600000	1410400000	458450000	167570000	290880000	682720000	344790000	337930000	1217100000	571270000	645840000	306710000	170970000	135740000	23769	1135	22520	148486;148487;148488;148489;148490;148491	200690;200691;200692	200692			3	
IEGVYARDETEFYLGK	1	Unmodified	1888.9207	0.92069363	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							1	2	2	4	62.701	61.938	2;3	1.6801E-05	53381	160511_QHF_FH_JSI12i_2	89.541	58.998			1.1134	1.1638	24.852	9	1	Median	1.2805	1.0871	NaN	1	0	Median	0.92391	1.138	3.1717	2	0	Median	1.3982	1.4167	8.7331	2	0	Median	1.0846	1.1494	36.804	4	1	Median	2066200000	881420000	1184700000	52148000	22882000	29267000	476090000	299420000	176670000	394690000	215570000	179120000	1143200000	343550000	799670000	23770	1135	22521	148492;148493;148494;148495;148496;148497;148498;148499;148500	200693;200694;200695;200696;200697;200698;200699;200700;200701;200702;200703;200704;200705;200706;200707;200708	200695			16	
IEGYEDQVLITEHGDLGNGK	1	Unmodified	2186.0491	0.049141622	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	59.418	58.612	3	0.00054775	53393	160511_QHF_FH_JSI12i_1	48.007	33.991			0.83904	0.81298	37.316	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83904	0.81298	NaN	1	0	Median	0.91454	0.9647	50.89	2	0	Median	219810000	124580000	95238000	0	0	0	0	0	0	97114000	41391000	55723000	122700000	83185000	39516000	23771	1606	22522	148501;148502;148503	200709;200710;200711	200711			2	
IEGYEDQVLITEHGDLGNSR	0	Unmodified	2244.0659	0.065854319	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	59.44	58.515	3	1.719E-11	50263	160511_QHF_FH_JSI12i_2	132.01	126.43			0.99641	1.0793	11.08	4	0	Median	1.4953	1.2673	NaN	1	0	Median	0.8123	1.0189	NaN	1	0	Median	0.97903	0.99822	NaN	1	0	Median	1.0141	1.1434	NaN	1	0	Median	1075400000	512370000	563020000	213630000	79238000	134390000	298420000	169390000	129030000	276080000	133850000	142230000	287270000	129890000	157380000	23772	1788	22523	148504;148505;148506;148507;148508;148509	200712;200713;200714;200715;200716;200717;200718;200719;200720;200721	200714			10	
IEHFISILGK	1	Unmodified	1155.6652	0.66519463	3069	Q6NSJ5	LRRC8E	Volume-regulated anion channel subunit LRRC8E	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.638	62.543	3	0.00055564	53784	160511_QHF_FH_JSI12i_3	73.067	66.407			0.52532	0.51349	43.573	3	1	Plateau	1.4354	1.2135	NaN	1	0	Median	0.60454	0.69879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52532	0.51349	NaN	1	1	Median	59191000	35372000	23819000	11855000	7074400	4780100	14580000	8106500	6473900	0	0	0	32756000	20191000	12565000	23773	3069	22524	148510;148511;148512;148513	200722;200723;200724;200725	200725			4	
IEHGALVHHSGTITCLK	1	Unmodified	1871.9676	0.96760102	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			95.07	94.131	3	0.016338	78410	160511_QHF_FH_JSI10i_3	25.319	8.2408			0.94984	0.93477	2.9225	2	0	Median	1.1704	0.95429	NaN	1	0	Median	0.77083	0.91566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156060000	86561000	69504000	62549000	27769000	34780000	93516000	58792000	34724000	0	0	0	0	0	0	23774	5070	22525	148514;148515	200726;200727;200728	200727			3	
IEHIKHSK	2	Acetyl (K)	1032.5716	0.5716286	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.696							1	1	6		3	4	1	9.0923	0.45023	2;3	0.00097175	2966	160513_QHF_FH_JSI11Kac_6	71.614	52.942			1.1143	1.3006	104.34	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3871	1.6715	36.259	3	0	Median	0.21141	0.20451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53747000	24678000	29069000	0	0	0	26003000	10129000	15874000	20320000	7125100	13195000	7424600	7424600	0	23775	1591	22526	148516;148517;148518;148519;148520;148521;148522;148523	200729;200730;200731;200732;200733;200734;200735;200736	200732	1610		8	
IEHLYKNPQAHIEGNMK	2	Acetyl (K)	2063.0258	0.02584418	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		49.505	39.803	3;4	0.0042034	21600	160513_QHF_FH_JSI11Kac_6	54.974	44.916			0.15654	0.15151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15654	0.15151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11516000	10895000	621220	0	0	0	0	0	0	11516000	10895000	621220	0	0	0	23776	427	22527	148524;148525	200737;200738	200738	213		2	
IEHSFWR	0	Unmodified	973.477	0.47699993	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			7							3	4			31.343	29.967	3	0.0082301	25116	160511_QHF_FH_JSI10i_3	43.246	32.373			0.89563	0.89585	11.977	5	1	Median	1.1868	0.96564	16.735	2	1	Median	0.89563	1.0152	11.026	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	379800000	186660000	193140000	178080000	76998000	101090000	201720000	109660000	92056000	0	0	0	0	0	0	23777	2734	22528	148526;148527;148528;148529;148530;148531;148532	200739;200740;200741;200742;200743;200744;200745;200746	200742			8	
IEIAQKHPDIYAVPIK	2	Acetyl (K)	1876.0458	0.045834566	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.733	67.124	3	0.017202	35673	160513_QHF_FH_JSI11Kac_5	35.329	18.39			0.44111	0.43357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44111	0.43357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4891600	3311400	1580200	0	0	0	0	0	0	4891600	3311400	1580200	0	0	0	23778	5268	22529	148533	200747	200747	3350		1	
IEIESFYEGEDFSETLTR	0	Unmodified	2163.9848	0.98481003	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	21	6								7	7	6	7	93.341	92.917	2;3	1.4235E-236	84358	160511_QHF_FH_JSI12i_1	338.11	308.56			1.0884	1.0287	23.611	23	6	Median	1.1868	0.97741	26.096	7	2	Median	0.72222	0.84388	12.554	6	2	Median	1.3219	1.3027	8.9602	5	2	Median	1.0162	1.0444	20.902	5	0	Median	1321900000	682680000	639200000	207810000	96015000	111790000	576800000	331710000	245100000	218290000	94829000	123460000	318970000	160130000	158850000	23779	982	22530	148534;148535;148536;148537;148538;148539;148540;148541;148542;148543;148544;148545;148546;148547;148548;148549;148550;148551;148552;148553;148554;148555;148556;148557;148558;148559;148560	200748;200749;200750;200751;200752;200753;200754;200755;200756;200757;200758;200759;200760;200761;200762;200763;200764;200765;200766;200767;200768;200769;200770;200771;200772;200773;200774;200775;200776;200777;200778;200779;200780;200781;200782;200783;200784;200785;200786;200787;200788;200789;200790;200791;200792;200793;200794;200795	200763			48	
IEIHEQEAILHNFSSTNPTQVNGSVIDEPVR	0	Unmodified	3472.7223	0.72227518	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	79.534	79.413	4	6.9541E-18	68854	160511_QHF_FH_JSI12i_3	98.151	93.437			2.0414	1.9844	65.92	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4203	3.1628	NaN	1	0	Median	1.2184	1.2451	NaN	1	0	Median	138120000	54063000	84056000	0	0	0	0	0	0	68879000	20378000	48501000	69241000	33686000	35555000	23780	1576	22531	148561;148562	200796;200797;200798;200799	200799			4	
IEIHYAK	1	Unmodified	872.4756	0.47560295	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	23.52	22.74	3	0.0042173	19024	160511_QHF_FH_JSI12i_2	56.547	33.023			1.0287	1.0712	9.292	4	0	Median	1.1785	0.99246	NaN	1	0	Median	0.90514	1.1262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0287	1.1123	12.385	2	0	Median	328410000	170700000	157710000	75543000	29045000	46498000	102910000	61649000	41260000	0	0	0	149960000	80006000	69952000	23781	2594	22532	148563;148564;148565;148566	200800;200801	200800			2	
IEILAPPNGSVPGDR	0	Unmodified	1533.8151	0.81510635	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	3.41	8	4					1			3	4	3	3	62.975	62.25	2;3	1.6869E-07	56844	160511_QHF_FH_JSI12i_1	140.39	120.63			0.89786	0.93706	19.554	12	2	Median	1.1177	0.93513	10.697	3	1	Plateau	0.83725	0.99475	39.625	3	1	Plateau	0.94547	0.939	6.5784	3	0	Plateau	0.92432	0.9651	3.2533	3	0	Median	989630000	524480000	465150000	204930000	101310000	103610000	248720000	141950000	106770000	303290000	155870000	147420000	232690000	125340000	107350000	23782	2323	22533	148567;148568;148569;148570;148571;148572;148573;148574;148575;148576;148577;148578;148579	200802;200803;200804;200805;200806;200807;200808;200809;200810;200811;200812;200813;200814;200815;200816;200817;200818;200819;200820;200821;200822;200823;200824;200825;200826;200827;200828	200810			27	
IEILAPPNGSVPGDRITFDAFPGEPDK	1	Unmodified	2851.4392	0.43922403	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	96.491	96.374	3	7.7245E-14	83467	160511_QHF_FH_JSI12i_3	86.856	70.751			1.1274	1.1301	16.097	6	3	Median	1.0782	0.92206	NaN	1	0	Median	1.1787	1.4486	NaN	1	0	Median	1.2947	1.208	5.1237	2	2	Median	0.93731	1.0486	6.2911	2	1	Median	210350000	104050000	106300000	21213000	11335000	9877600	21378000	10907000	10471000	84869000	37881000	46989000	82894000	43929000	38965000	23783	2323	22534	148580;148581;148582;148583;148584;148585	200829;200830;200831;200832;200833;200834;200835;200836;200837;200838;200839	200838			11	
IEINFPAEYPFKPPK	2	Unmodified	1788.9451	0.94505789	2071	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.14		7	10						2	2	5	6	6	85.356	83.919	2;3;4	1.1929E-10	73674	160511_QHF_FH_JSI12i_3	108.37	74.487			1.0374	1.0571	20.385	18	4	Median	1.3815	1.1525	2.6454	2	0	Median	0.82729	1.0583	28.447	5	2	Median	1.048	0.99533	17.899	6	1	Median	1.0326	1.0587	20.049	5	1	Median	6732200000	3521100000	3211100000	447120000	201380000	245740000	749600000	389550000	360050000	1529300000	777490000	751810000	4006200000	2152700000	1853500000	23784	2071	22535	148586;148587;148588;148589;148590;148591;148592;148593;148594;148595;148596;148597;148598;148599;148600;148601;148602;148603;148604	200840;200841;200842;200843;200844;200845;200846;200847;200848;200849;200850;200851;200852;200853;200854;200855;200856;200857;200858;200859;200860;200861;200862;200863;200864;200865;200866;200867;200868;200869;200870;200871;200872;200873;200874;200875;200876;200877;200878;200879;200880;200881;200882;200883;200884;200885;200886;200887;200888;200889;200890;200891;200892;200893;200894	200893			55	
IEIPIHIVPHVTIGK	1	Unmodified	1664.9978	0.99776216	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	3	2	81.004	80.491	3;4	5.7205E-07	69582	160511_QHF_FH_JSI12i_3	121.31	116.68			0.98502	0.9424	7.929	6	6	Median	1.0101	0.83131	NaN	1	1	Median	0.71327	0.83285	NaN	1	1	Median	1.0231	0.94615	5.2854	2	2	Median	0.96635	0.97607	0.24124	2	2	Median	684160000	328130000	356030000	46898000	22421000	24477000	63701000	38938000	24763000	188050000	82384000	105660000	385520000	184390000	201130000	23785	1588	22536	148605;148606;148607;148608;148609;148610;148611	200895;200896;200897;200898;200899;200900;200901;200902	200902			8	
IEIPLFHVLNAR	0	Unmodified	1420.8191	0.81906951	3191	Q6ZTN6;Q8IZ07	ANKRD13D;ANKRD13A	Ankyrin repeat domain-containing protein 13D;Ankyrin repeat domain-containing protein 13A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	95.882	95.632	3	0.0011723	79945	160511_QHF_FH_JSI10i_3	57.019	50.138			0.84648	1.0266	21.037	5	2	Median	1.2495	1.0909	NaN	1	0	Median	0.84648	1.0266	NaN	1	0	Median	0.90825	0.87286	27.573	2	1	Median	0.66885	0.72744	NaN	1	1	Median	36674000	16763000	19911000	4128200	1645700	2482600	5833400	3165000	2668400	19814000	8275300	11539000	6898100	3676500	3221600	23786	3191	22537	148612;148613;148614;148615;148616;148617	200903;200904;200905;200906;200907;200908;200909	200907			7	
IEIQTLTGLFK	1	Unmodified	1261.7282	0.72818882	1855	P55212	CASP6	Caspase-6;Caspase-6 subunit p18;Caspase-6 subunit p11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		96.944	96.673	2	0.053752	84888	160511_QHF_FH_JSI11i_2	42.743	23.472			0.56739	0.55294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56739	0.55294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6188000	3834500	2353500	0	0	0	0	0	0	6188000	3834500	2353500	0	0	0	23787	1855	22538	148618	200910	200910			1	
IEISQHAK	1	Unmodified	924.50288	0.50288033	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	10.951	10.75	2;3	0.0032495	8159	160511_QHF_FH_JSI12i_3	53.878	40.5			9.8827	10.04	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.8827	10.04	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2328700000	65451000	2263300000	0	0	0	0	0	0	2328700000	65451000	2263300000	0	0	0	23788	1956	22539	148619;148620;148621;148622;148623;148624	200911;200912;200913;200914;200915;200916	200916			6	
IEISTIASNYHLEVNPSDAGNSDR	0	Unmodified	2601.2307	0.23068782	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.218	76.079	3	8.7832E-05	67945	160511_QHF_FH_JSI11i_3	49.902	42.87			0.91803	0.92062	15.077	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0843	1.0242	NaN	1	0	Median	0.77724	0.82752	NaN	1	0	Median	51787000	27608000	24179000	0	0	0	0	0	0	31014000	17289000	13725000	20773000	10319000	10454000	23789	1506	22540	148625;148626	200917;200918;200919	200918			3	
IEITMRK	1	Unmodified	889.50552	0.50552287	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	25.701	24.813	3	0.0023717	20119	160511_QHF_FH_JSI9i_3	77.674	38.882			1.7501	1.4888	18.427	3	0	Median	1.7501	1.3995	NaN	1	0	Median	1.2882	1.4888	NaN	1	0	Median	2.0699	1.9772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	581860000	247580000	334270000	209560000	86500000	123060000	187790000	93134000	94660000	184510000	67947000	116560000	0	0	0	23790	5296	22541	148627;148628;148629;148630;148631	200920;200921;200922;200923;200924;200925;200926;200927	200924			8	
IEKSFDAHPR	1	Acetyl (K)	1240.62	0.62003536	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		36.173	26.353	3	0.050714	15464	160513_QHF_FH_JSI11Kac_5	33.057	24.544			0.1368	0.13367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1368	0.13367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1644900	1421800	223140	0	0	0	0	0	0	1644900	1421800	223140	0	0	0	23791	404	22542	148632	200928	200928			1	
IELEETIK	1	Unmodified	973.53318	0.53317741	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.971	44.326	2	0.014809	40264	160511_QHF_FH_JSI12i_1	60.478	23.384			2.0315	2.0955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0315	2.0955	NaN	1	1	Median	127140000	35381000	91755000	0	0	0	0	0	0	0	0	0	127140000	35381000	91755000	23792	1883	22543	148633	200929	200929			1	
IELETYK	1	Unmodified	894.46985	0.46984887	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	35.882	35.482	2	0.015081	31795	160511_QHF_FH_JSI10i_1	57.281	17.178			0.96492	1.0217	1.7898	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.83132	0.99177	NaN	1	1	Median	1.0604	1.0227	NaN	1	1	Median	0.96492	0.99122	NaN	1	1	Median	380710000	218890000	161820000	0	0	0	131650000	83098000	48554000	147900000	78140000	69765000	101150000	57650000	43503000	23793	2727	22544	148634;148635;148636;148637	200930;200931;200932;200933	200933			4	
IELETYKLK	2	Acetyl (K)	1177.6594	0.65944055	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	71.801	61.072	2	0.006684	32633	160513_QHF_FH_JSI10Kac_4	69.423	27.314			0.34001	0.37057	194.46	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2539	1.4657	NaN	1	0	Median	0.092199	0.093693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10250000	7758200	2491600	0	0	0	5301800	2970500	2331400	2081500	1921300	160180	2866400	2866400	0	23794	2727	22545	148638;148639;148640	200934;200935	200934	2650		2	
IELFADVVPK	1	Unmodified	1129.6383	0.63831118	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	80.069	79.467	2	6.0012E-05	70088	160511_QHF_FH_JSI9i_2	91.087	77.084			0.84851	1.0642	13.615	7	0	Linear	1.1307	0.95966	NaN	1	0	Median	0.81964	0.98201	6.0218	2	0	Median	0.91758	0.90212	20.837	2	0	Median	0.82332	0.89109	22.751	2	0	Median	386210000	195350000	190870000	51464000	23874000	27590000	122730000	68606000	54128000	110780000	55653000	55128000	101230000	47213000	54020000	23795	335	22546	148641;148642;148643;148644;148645;148646;148647	200936;200937;200938;200939;200940;200941;200942	200940			7	
IELFVGGELIDPADDRK	1	Unmodified	1885.9785	0.97854286	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	86.381	85.804	3	0.028463	74415	160511_QHF_FH_JSI12i_3	27.271	17.988			0.82732	0.9504	14.867	4	0	Median	NaN	NaN	NaN	0	0	Median	0.72654	0.89958	NaN	1	0	Median	1.1382	1.1148	NaN	1	0	Median	0.82732	0.88963	17.117	2	0	Median	46542000	24478000	22065000	0	0	0	10054000	4588200	5465300	11096000	4392400	6703700	25393000	15497000	9895800	23796	3921	22547	148648;148649;148650;148651	200943	200943			1	
IELGDVTPHNIK	1	Unmodified	1334.7194	0.71941505	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1			1	2	2	50.711	49.644	2;3	0.0013041	42797	160511_QHF_FH_JSI11i_2	76.143	38.951			0.7011	0.76988	34.209	4	1	Median	NaN	NaN	NaN	0	0	Median	0.65626	0.8127	NaN	1	0	Median	0.7189	0.71042	NaN	1	0	Median	0.95343	1.0357	49.606	2	1	Median	350900000	169820000	181080000	0	0	0	28323000	16995000	11328000	46817000	27952000	18865000	275760000	124870000	150890000	23797	4614	22548	148652;148653;148654;148655;148656	200944;200945;200946;200947;200948;200949	200947			6	
IELHGKPIEVEHSVPK	2	Unmodified	1810.9941	0.99413335	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	37.758	37.636	3;4;5	0.0032955	32019	160511_QHF_FH_JSI12i_3	50.305	39.671			0.89087	0.88133	3.9687	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9105	0.86386	NaN	1	1	Median	0.87167	0.89915	4.302	3	3	Median	760290000	397010000	363280000	0	0	0	0	0	0	130680000	60019000	70665000	629600000	336990000	292610000	23798	132	22549	148657;148658;148659;148660	200950;200951;200952;200953	200952			4	
IELLGSYDPQK	1	Unmodified	1261.6554	0.65541781	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							2	3	2	2	60.294	59.444	2	2.2622E-05	53780	160511_QHF_FH_JSI10i_1	121.5	86.207			0.90786	0.91643	8.7207	8	1	Median	1.046	0.86534	2.8639	2	1	Median	0.77844	0.92247	5.7869	2	0	Median	0.96465	0.95369	14.56	2	0	Median	0.90786	1.0002	7.515	2	0	Median	1674200000	873390000	800770000	238930000	123480000	115450000	473960000	253330000	220630000	553170000	280750000	272420000	408100000	215830000	192270000	23799	1247	22550	148661;148662;148663;148664;148665;148666;148667;148668;148669	200954;200955;200956;200957;200958;200959;200960;200961;200962;200963;200964;200965;200966;200967	200961			14	
IELPELFDR	0	Unmodified	1130.5972	0.59717465	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	85.559	85.076	2	0.00083406	73739	160511_QHF_FH_JSI12i_3	73.248	26.166			0.8696	0.8514	12.951	6	0	Median	0.97903	0.84214	NaN	1	0	Median	0.58077	0.70265	NaN	1	0	Median	0.94183	0.90519	7.1171	2	0	Median	0.74803	0.79926	18.29	2	0	Median	338900000	187700000	151200000	44038000	21632000	22406000	53579000	34477000	19102000	120770000	63247000	57528000	120510000	68345000	52168000	23800	5549	22551	148670;148671;148672;148673;148674;148675	200968;200969;200970;200971;200972;200973;200974;200975;200976;200977	200976			10	
IELPTTVK	1	Unmodified	899.53278	0.53278348	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1.25	0.433	3	1									1	2	1	47.393	46.891	2	0.057531	42703	160511_QHF_FH_JSI12i_1	35.618	15.336			1.0477	1.0626	17.324	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78803	0.93331	NaN	1	0	Median	1.0726	1.0516	19.824	2	0	Median	1.1847	1.2777	NaN	1	0	Median	200140000	94636000	105510000	0	0	0	55795000	30662000	25133000	107660000	48847000	58816000	36687000	15127000	21560000	23801	1462	22552	148676;148677;148678;148679	200978	200978			1	
IELVVAPAGVTLK	1	Unmodified	1308.8017	0.80168812	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	83.524	83.017	2	0.0012451	75662	160511_QHF_FH_JSI12i_1	61.435	51.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23802	1182	22553	148680	200979	200979			1	
IEMWSYAAK	1	Unmodified	1097.5216	0.52156686	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		37.285	36.771	2	0.023303	48903	160511_QHF_FH_JSI10i_2	49.536	39.249			3.4999	3.8301	49.801	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1829	2.6932	NaN	1	1	Median	5.6113	5.4468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	206840000	37994000	168850000	0	0	0	81845000	24939000	56906000	125000000	13055000	111940000	0	0	0	23803	3903	22554	148681;148682	200980;200981	200981			2	
IENARMMERMSLKHQNSGK	2	Acetyl (K);2 Oxidation (M)	2333.1039	0.10385328	2961	Q5TAP6	UTP14C	U3 small nucleolar RNA-associated protein 14 homolog C	yes	yes	1	0	2	3		By MS/MS			16	0									1		1			90.084	84.363	3	0.016274	47945	160513_QHF_FH_JSI10Kac_6	34.274	17.033			1.028	1.1855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.028	1.1855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109690000	55226000	54463000	0	0	0	109690000	55226000	54463000	0	0	0	0	0	0	23804	2961	22555	148683	200982	200982	2725	2173;2174	1	
IENHEGVR	0	Unmodified	952.47264	0.47264284	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.15	5	8	8				1	6	3	7	8	8	8	5.5834	2.5586	2;3	0.00025474	2856	160511_QHF_FH_JSI11i_2	87.308	54.467			0.90926	0.94656	15.656	31	0	Median	1.2696	1.0704	16.843	7	0	Median	0.82327	0.94476	11.644	8	0	Median	0.89872	0.88497	10.506	8	0	Median	0.88967	0.93455	18.817	8	0	Median	78158000000	38705000000	39453000000	11075000000	4803600000	6271100000	16917000000	8758800000	8157900000	23587000000	11974000000	11614000000	26579000000	13169000000	13410000000	23805	1055	22556	148684;148685;148686;148687;148688;148689;148690;148691;148692;148693;148694;148695;148696;148697;148698;148699;148700;148701;148702;148703;148704;148705;148706;148707;148708;148709;148710;148711;148712;148713;148714	200983;200984;200985;200986;200987;200988;200989;200990;200991;200992;200993;200994;200995;200996;200997;200998;200999;201000;201001;201002;201003;201004;201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017;201018;201019;201020	201004			38	
IENHEGVRR	0	Unmodified	1108.5738	0.57375386	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				5.0118	4.5124	2;3	0.0001406	2497	160511_QHF_FH_JSI9i_3	76.827	48.1			1.0781	0.86467	2.7498	2	1	Median	1.0781	0.86467	2.7498	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243330000	120480000	122850000	243330000	120480000	122850000	0	0	0	0	0	0	0	0	0	23806	1055	22557	148715;148716	201021;201022	201022			2	
IENLELMSQHGCNAWK	1	Unmodified	1928.8873	0.88730179	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		57.024	57.024	3	0.00096771	50542	160511_QHF_FH_JSI11i_3	52.522	43.426			1.358	1.2594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.358	1.2594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44615000	26710000	17905000	0	0	0	0	0	0	44615000	26710000	17905000	0	0	0	23807	585	22558	148717;148718	201023;201024;201025	201023			3	
IENLSNLHQLQMLELGSNR	0	Unmodified	2208.1321	0.13210017	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	80.303	79.628	3	1.1869E-09	70977	160511_QHF_FH_JSI11i_3	114.46	100.15			1.1572	1.1783	22.283	8	6	Median	1.8044	1.5548	NaN	1	1	Median	1.342	1.6113	24.042	2	2	Median	1.2009	1.1418	8.4025	3	2	Median	0.99961	1.0416	1.952	2	1	Median	608700000	288930000	319780000	55975000	22305000	33671000	104620000	41302000	63319000	263470000	126960000	136510000	184640000	98361000	86279000	23808	2673	22559	148719;148720;148721;148722;148723;148724;148725;148726	201026;201027;201028;201029;201030;201031;201032;201033;201034	201026			9	
IENLTEEAFNTQVTALIK	1	Unmodified	2033.0681	0.06808615	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	2	2	2	98.201	98.092	2;3	1.2385E-22	88804	160511_QHF_FH_JSI10i_1	173.44	131.4			0.81886	0.86774	35.252	6	3	Median	2.152	1.8018	NaN	1	1	Median	0.71691	0.82518	11.403	2	0	Median	0.8728	0.84181	NaN	1	0	Median	0.99461	1.0018	39.801	2	2	Median	135800000	77139000	58661000	8012400	2315500	5696900	68142000	41548000	26595000	19593000	11361000	8231700	40052000	21915000	18137000	23809	387	22560	148727;148728;148729;148730;148731;148732;148733	201035;201036;201037;201038;201039;201040;201041;201042;201043	201041			9	
IENVPTGPNNKPK	2	Unmodified	1406.7518	0.75177781	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	17.606	17.333	3	0.00020775	13883	160511_QHF_FH_JSI12i_3	70.089	60.301			1.2025	1.2055	57.356	4	3	Median	0.56575	0.49424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6836	1.639	3.1405	2	2	Median	0.89441	0.90657	NaN	1	0	Median	289090000	153800000	135280000	57443000	42922000	14520000	0	0	0	112210000	52671000	59537000	119440000	58210000	61227000	23810	335	22561	148734;148735;148736;148737	201044;201045;201046;201047	201047			4	
IENVVLVVPVK	1	Unmodified	1207.754	0.75400964	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.22	4	3				1	3	1		2	4	3	3	76.231	71.674	2	4.7933E-05	36467	160513_QHF_FH_JSI10Kac_4	98.943	84.276			0.93593	1.0018	15.285	12	1	Median	1.1399	0.94812	3.8493	2	0	Median	0.86884	1.121	12.254	4	0	Linear	1.0732	1.0463	7.0806	3	0	Median	0.85992	0.88599	29.402	3	1	Median	401370000	196110000	205270000	76839000	31482000	45357000	122480000	61882000	60602000	120790000	56179000	64614000	81258000	46563000	34695000	23811	4930	22562	148738;148739;148740;148741;148742;148743;148744;148745;148746;148747;148748;148749	201048;201049;201050;201051;201052;201053;201054;201055;201056;201057	201049			10	
IEPELDGSAQVTSHDASTNGLINFIK	1	Unmodified	2755.3665	0.36645302	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	4	2	2	86.739	86.264	3	7.0578E-14	75884	160511_QHF_FH_JSI9i_2	85.801	78.268			0.78625	0.88523	19.995	9	4	Median	1.1598	1.002	NaN	1	0	Median	0.67295	0.79706	17.46	4	4	Median	0.72396	0.70563	27.506	2	0	Median	0.88996	0.96392	12.044	2	0	Median	333260000	186910000	146340000	41589000	17855000	23735000	157320000	99541000	57776000	66197000	35276000	30921000	68156000	34243000	33913000	23812	856	22563	148750;148751;148752;148753;148754;148755;148756;148757;148758	201058;201059;201060;201061;201062;201063;201064;201065;201066;201067;201068;201069;201070;201071;201072;201073	201067			16	
IEPEPFENCLLRPGSPAR	0	Unmodified	2081.0364	0.036408866	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			67.805	66.947	3	0.0064381	59462	160511_QHF_FH_JSI10i_2	41.554	23.854			1.7522	1.8063	14.697	2	0	Median	2.3433	2.0041	NaN	1	0	Median	1.3102	1.628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89749000	32714000	57035000	41208000	10715000	30493000	48541000	21999000	26542000	0	0	0	0	0	0	23813	1629	22564	148759;148760	201074;201075	201075			2	
IEPGVDPDDTYNETPYEK	1	Unmodified	2080.9113	0.91131074	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	52.464	51.795	2;3	5.4753E-41	46648	160511_QHF_FH_JSI10i_1	249.66	236.86			1.0573	1.0226	7.3985	8	0	Median	1.1517	0.94286	9.4278	2	0	Median	0.85519	1.0122	6.4637	2	0	Median	1.0981	1.0656	3.7704	2	0	Median	0.96982	1.0214	9.1384	2	0	Median	1551100000	777180000	773910000	161650000	76140000	85509000	452270000	262690000	189570000	338850000	162590000	176270000	598320000	275760000	322560000	23814	4715	22565	148761;148762;148763;148764;148765;148766;148767;148768;148769	201076;201077;201078;201079;201080;201081;201082;201083;201084;201085;201086;201087;201088;201089;201090;201091;201092;201093;201094	201088			19	
IEPGVSVSLVNPQPSNGHFSTK	1	Unmodified	2293.1703	0.17025981	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	62.733	61.831	3;4	6.0907E-19	54703	160511_QHF_FH_JSI10i_2	152.64	144.45			1.0826	1.1537	13.354	6	2	Median	1.3978	1.1898	NaN	1	1	Median	0.98967	1.1753	8.6485	2	0	Median	1.0894	1.1188	NaN	1	0	Median	1.0489	1.125	27.905	2	1	Median	642570000	304210000	338360000	145730000	59107000	86626000	249470000	134330000	115140000	94076000	44438000	49638000	153290000	66329000	86961000	23815	5215	22566	148770;148771;148772;148773;148774;148775	201095;201096;201097;201098;201099;201100;201101;201102;201103;201104;201105	201104			11	
IEPHHTAVLGEGDSVQVENK	1	Unmodified	2158.0655	0.065460388	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	2	6	4	35.071	34.488	2;3;4	6.0423E-44	29611	160511_QHF_FH_JSI11i_3	209.66	192.73			0.80145	0.91695	26.602	11	2	Median	1.5803	1.3483	0.77125	2	0	Median	0.76592	0.93516	8.6979	2	0	Median	0.99604	0.94243	25.627	4	1	Median	0.70916	0.72907	14.839	3	1	Median	2083100000	1055300000	1027800000	171700000	86735000	84962000	297210000	163250000	133960000	927280000	435430000	491850000	686910000	369930000	316990000	23816	157	22567	148776;148777;148778;148779;148780;148781;148782;148783;148784;148785;148786;148787;148788;148789	201106;201107;201108;201109;201110;201111;201112;201113;201114;201115;201116;201117;201118;201119;201120;201121;201122;201123;201124;201125;201126;201127	201107			22	
IEPHTGLLLLSVQK	1	Unmodified	1546.9083	0.90827845	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	2	3	4	3	72.417	69.482	2;3	1.2964E-05	36114	160513_QHF_FH_JSI9Kac_6	98.943	87.028			1.0532	1.0364	19.213	11	2	Median	1.1218	0.94845	4.4955	2	0	Median	0.90492	1.078	14.302	2	2	Median	1.044	1.0083	21.255	4	0	Median	1.3354	1.386	14.507	3	0	Plateau	1605900000	770730000	835210000	134960000	64047000	70912000	197370000	100220000	97150000	621260000	304800000	316460000	652350000	301660000	350690000	23817	1085	22568	148790;148791;148792;148793;148794;148795;148796;148797;148798;148799;148800;148801	201128;201129;201130;201131;201132;201133;201134;201135;201136;201137;201138;201139;201140;201141;201142;201143	201138			16	
IEPIPGESPK	1	Unmodified	1065.5706	0.57062555	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	36.664	32.35	2	0.0015325	28573	160511_QHF_FH_JSI11i_1	65.305	55.524			0.96892	0.98685	11.442	7	0	Median	1.099	0.90643	NaN	1	0	Median	0.84874	1.0077	NaN	1	0	Median	0.95511	0.95097	5.2381	2	0	Median	0.97305	1.0463	18.731	3	0	Median	1807800000	855250000	952550000	472670000	211170000	261500000	456530000	241380000	215150000	478720000	229450000	249270000	399890000	173260000	226630000	23818	454	22569	148802;148803;148804;148805;148806;148807;148808	201144;201145;201146;201147;201148;201149;201150;201151;201152;201153	201144			10	
IEPPDRR	0	Unmodified	881.47191	0.47191456	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			10.245	9.7377	3	0.007942	7371	160511_QHF_FH_JSI9i_2	47.849	17.663			1.0047	1.0424	15.671	2	0	Median	1.3421	1.1645	NaN	1	0	Median	0.75217	0.93304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	638640000	336300000	302340000	270990000	128020000	142970000	367650000	208280000	159370000	0	0	0	0	0	0	23819	2672	22570	148809;148810	201154;201155;201156	201154			3	
IEPPDTGLYYDEYLK	1	Unmodified	1814.8614	0.86144742	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			79.681	79.52	2	2.3571E-05	70791	160511_QHF_FH_JSI9i_1	83.617	61.419			1.4359	1.705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4359	1.705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53410000	21937000	31473000	0	0	0	53410000	21937000	31473000	0	0	0	0	0	0	23820	2100	22571	148811;148812	201157;201158	201158			2	
IEPPGLFR	0	Unmodified	927.5178	0.51780212	998	P11387;Q969P6	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	yes	no	0	0	0	0		By MS/MS			2	0		1									1			57.871	56.984	2	0.019355	50394	160511_QHF_FH_JSI10i_2	45.718	18.193			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23821	998	22572	148813	201159	201159			1	
IEPSINHILSTR	0	Unmodified	1378.7569	0.75686319	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.403	53.284	3	0.00028369	47347	160511_QHF_FH_JSI11i_3	70.628	63.747			1.0193	0.97691	5.1374	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1094	1.0131	NaN	1	0	Median	0.9365	0.94206	NaN	1	0	Median	127880000	61083000	66793000	0	0	0	0	0	0	71440000	34100000	37340000	56436000	26983000	29453000	23822	429	22573	148814;148815	201160;201161	201160			1	
IEPSPYK	1	Unmodified	832.43307	0.43306943	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	25.09	17.353	2	0.011748	14281	160511_QHF_FH_JSI12i_2	60.788	35.789			1.0344	1.0162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0344	1.0162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13067000	5370700	7696600	0	0	0	0	0	0	13067000	5370700	7696600	0	0	0	23823	4316	22574	148816;148817	201162;201163	201162			2	
IEPSVNFLK	1	Unmodified	1045.5808	0.5807963	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.38	3	4	3				1	2		2	4	3	4	64.936	61.831	2	1.3681E-05	56207	160511_QHF_FH_JSI11i_1	109.86	53.852			0.97113	0.95693	19.67	13	1	Median	1.1625	0.94854	0.36879	2	0	Median	0.92541	1.1109	32.244	4	0	Linear	1.0636	1.0395	7.2697	3	0	Median	0.97661	1.046	12.648	4	1	Median	3004100000	1636300000	1367800000	494090000	224820000	269270000	763870000	447590000	316290000	937700000	540430000	397270000	808490000	423490000	385000000	23824	2326	22575	148818;148819;148820;148821;148822;148823;148824;148825;148826;148827;148828;148829;148830	201164;201165;201166;201167;201168;201169;201170;201171;201172;201173;201174;201175;201176;201177;201178;201179;201180;201181;201182	201165			19	
IEPVFHVMGFSVTGR	0	Unmodified	1674.8552	0.85519702	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.35		3	8						6	5	5	4	3	83.246	79.804	2;3	1.8704E-07	40416	160513_QHF_FH_JSI11Kac_6	93.754	77.089			0.98842	1.0036	15.244	16	1	Median	1.2972	1.0795	6.5067	4	0	Median	0.81657	0.93133	12.022	5	0	Median	1.1648	1.1037	24.145	4	1	Linear	0.99817	1.0204	11.284	3	0	Median	3180200000	1606800000	1573500000	837020000	394720000	442300000	1229800000	643780000	586020000	703280000	372050000	331230000	410140000	196220000	213910000	23825	2638;2895	22576	148831;148832;148833;148834;148835;148836;148837;148838;148839;148840;148841;148842;148843;148844;148845;148846;148847	201183;201184;201185;201186;201187;201188;201189;201190;201191;201192;201193;201194;201195;201196;201197;201198;201199;201200;201201;201202;201203;201204;201205;201206;201207;201208	201189			26	
IEPVFIPLVLAFR	0	Unmodified	1512.9068	0.90682189	2963	Q5TAX3	ZCCHC11	Terminal uridylyltransferase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.17	103.18	2	9.0178E-05	92254	160511_QHF_FH_JSI11i_3	87.328	69.961			1.0127	0.98426	0.97593	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0681	0.99107	NaN	1	0	Median	0.96024	0.97749	NaN	1	0	Median	49382000	25503000	23880000	0	0	0	0	0	0	15798000	6675600	9122500	33584000	18827000	14757000	23826	2963	22577	148848;148849	201209;201210;201211	201209			3	
IEPVVLPLLWFAESGAMEGETLHTFYTQLVLMPK	1	Unmodified	3858.998	0.99802802	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.22	97.503	4	3.7505E-23	57729	160513_QHF_FH_JSI10Kac_6	105.61	97.737			0.79022	0.91899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79022	0.91899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116610000	65015000	51590000	0	0	0	116610000	65015000	51590000	0	0	0	0	0	0	23827	3749	22578	148850	201212	201212			1	
IEQAMDLVK	1	Unmodified	1045.5478	0.54778161	2699	Q15714;O75157;Q99576	TSC22D1;TSC22D2;TSC22D3	TSC22 domain family protein 1;TSC22 domain family protein 2;TSC22 domain family protein 3	no	no	0	0	0	0			By MS/MS		1	0	1											1		44.685	44.292	2	0.012075	40079	160511_QHF_FH_JSI11i_1	57.708	6.3623			2.1678	2.1328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1678	2.1328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	236790000	94113000	142680000	0	0	0	0	0	0	236790000	94113000	142680000	0	0	0	23828	2699	22579	148851	201213	201213			1	
IEQEFLTEALPVK	1	Unmodified	1515.8185	0.81846039	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								3	2	2	2	79.753	79.194	2;3	7.8647E-07	70378	160511_QHF_FH_JSI9i_1	130.56	93.869			1.225	1.0601	39.71	8	3	Median	1.3562	1.1046	42.83	3	2	Median	1.318	1.5034	NaN	1	0	Median	1.0126	0.98623	52.746	2	1	Median	0.78205	0.82168	30.203	2	0	Median	537910000	279250000	258660000	170720000	70967000	99753000	21563000	10582000	10980000	159850000	89518000	70330000	185780000	108180000	77597000	23829	1373	22580	148852;148853;148854;148855;148856;148857;148858;148859;148860	201214;201215;201216;201217;201218;201219;201220;201221;201222;201223;201224;201225	201222			12	
IEQETQK	1	Unmodified	874.43961	0.43961137	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	2	1	1	5.2789	2.1186	2	0.017903	2777	160511_QHF_FH_JSI10i_1	60.76	14.334			0.95915	1.109	13.806	5	0	Median	1.4831	1.2058	NaN	1	0	Median	0.89738	1.068	5.3253	2	0	Median	1.4302	1.4328	NaN	1	0	Median	0.95915	1.0312	NaN	1	0	Median	1129400000	547280000	582100000	294020000	117570000	176450000	438280000	226430000	211850000	6354500	2619500	3735100	390730000	200670000	190070000	23830	475	22581	148861;148862;148863;148864;148865	201226;201227;201228;201229	201228			4	
IEQFSQEHSVK	1	Unmodified	1330.6517	0.65172941	2802	Q2TBE0	CWF19L2	CWF19-like protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.466	77.071	3	0.061054	63344	160511_QHF_FH_JSI9i_3	21.23	0.7669			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7371500	0	7371500	7371500	0	7371500	0	0	0	0	0	0	0	0	0	23831	2802	22582	148866	201230	201230			1	
IEQFVYSSPHDNK	1	Unmodified	1562.7365	0.73652168	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.2	4	8	1				2	5		4	7	5	4	36.456	31.627	2;3	1.6559E-05	26691	160511_QHF_FH_JSI12i_2	103.11	96.528			0.96515	1.0368	21.143	16	3	Median	1.1683	1.0094	2.5834	3	1	Median	0.96315	1.1783	28.539	5	1	Median	0.99033	0.99134	30.93	4	1	Median	0.92703	1.0386	8.8547	4	0	Median	1758200000	852930000	905230000	313860000	130560000	183300000	323000000	172420000	150580000	669290000	307210000	362080000	452010000	242740000	209270000	23832	1667	22583	148867;148868;148869;148870;148871;148872;148873;148874;148875;148876;148877;148878;148879;148880;148881;148882;148883;148884;148885;148886	201231;201232;201233;201234;201235;201236;201237;201238;201239;201240;201241;201242;201243;201244;201245;201246;201247;201248;201249;201250;201251;201252;201253;201254;201255;201256;201257;201258	201235			28	
IEQLHQEQANNDFFLLAELLSDYIR	0	Unmodified	3018.5087	0.50870058	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.897	90.741	3	3.6315E-22	52396	160513_QHF_FH_JSI9Kac_6	123.65	112.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55835000	21909000	33926000	55835000	21909000	33926000	0	0	0	0	0	0	0	0	0	23833	2448	22584	148887	201259	201259			1	
IEQLQNHENEDIYK	1	Unmodified	1771.8377	0.83769228	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								1	3	4	3	31.998	31.338	2;3	1.9593E-17	26458	160511_QHF_FH_JSI11i_2	138.94	104.22			0.97859	1.0588	39.925	8	4	Median	2.909	2.4808	NaN	1	1	Median	0.92441	1.0692	19.747	2	1	Median	0.90151	0.87573	39.348	3	1	Median	0.97859	1.0588	2.7004	2	1	Median	593930000	270230000	323700000	85276000	20561000	64714000	148910000	73642000	75271000	259650000	125620000	134040000	100090000	50413000	49676000	23834	158	22585	148888;148889;148890;148891;148892;148893;148894;148895;148896;148897;148898	201260;201261;201262;201263;201264;201265;201266;201267;201268	201267			9	
IEQLSPFPFDLLLK	1	Unmodified	1658.9283	0.92834519	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	1	3	102.66	102.57	2	6.4614E-10	88389	160511_QHF_FH_JSI12i_2	149.38	100.4			1.0617	1.059	28.441	9	4	Median	1.258	1.0559	13.329	3	2	Median	0.90288	1.0821	28.282	2	1	Median	1.0445	1.059	NaN	1	0	Median	1.0266	1.1648	51.021	3	1	Median	933130000	464130000	469000000	151440000	74825000	76615000	188300000	86962000	101330000	219520000	108030000	111500000	373870000	194320000	179550000	23835	2185	22586	148899;148900;148901;148902;148903;148904;148905;148906;148907	201269;201270;201271;201272;201273;201274;201275;201276;201277;201278;201279	201269			11	
IEQSQHLFQAHK	1	Unmodified	1464.7474	0.74736113	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								1	2	3	19.796	19.602	2;3;4	9.2526E-06	15777	160511_QHF_FH_JSI12i_3	89.959	79.606			0.92668	0.91293	20.536	6	1	Median	NaN	NaN	NaN	0	0	Median	0.61176	0.67361	NaN	1	1	Median	1.105	1.0485	18.292	2	0	Median	0.89022	0.90467	13.738	3	0	Median	664140000	366570000	297560000	0	0	0	29618000	17206000	12412000	157970000	62667000	95307000	476540000	286700000	189840000	23836	1796	22587	148908;148909;148910;148911;148912;148913	201280;201281;201282;201283;201284;201285;201286;201287;201288	201284			8	
IEQYYEAILALWNQLYINMK	1	Oxidation (M)	2531.277	0.27703307	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				99.626	90.471	3	0.0004391	52209	160513_QHF_FH_JSI9Kac_6	97.271	80.554			1.5315	1.2838	NaN	1	1	Median	1.5315	1.2838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203410000	99915000	103500000	203410000	99915000	103500000	0	0	0	0	0	0	0	0	0	23837	1085	22588	148914	201289	201289		731	1	
IEQYYEAILALWNQLYINMK	1	Unmodified	2515.2821	0.28211845	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.52	94.066	3	5.4759E-10	56585	160513_QHF_FH_JSI10Kac_6	111.66	103.37			0.97442	0.99118	18.143	2	0	Median	1.2898	1.1269	NaN	1	0	Median	0.73617	0.87184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	231560000	120330000	111230000	65880000	32501000	33379000	165680000	87832000	77853000	0	0	0	0	0	0	23838	1085	22588	148915;148916	201290;201291	201291			1	
IERDAQEMADSLGVR	0	Unmodified	1688.8152	0.8151827	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	47.224	46.772	2;3	4.149E-05	41222	160511_QHF_FH_JSI11i_3	105.6	88.381			1.1948	1.1712	16.383	5	0	Median	1.396	1.1844	NaN	1	0	Median	0.95824	1.1712	NaN	1	0	Median	1.375	1.293	22.446	2	0	Median	0.94671	0.96542	NaN	1	0	Median	652180000	263540000	388640000	164810000	65130000	99676000	191950000	58371000	133580000	185860000	75134000	110720000	109570000	64904000	44663000	23839	454	22589	148917;148918;148919;148920;148921	201292;201293;201294;201295;201296;201297	201292			6	
IERPGEGSPMVDNPMR	0	Unmodified	1783.8345	0.83453794	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		40.933	40.134	3	9.5204E-06	34978	160511_QHF_FH_JSI9i_2	109.35	92.071			0.94391	1.1371	19.62	5	0	Median	1.2241	1.0528	NaN	1	0	Median	0.93135	1.1408	0.45636	2	0	Median	1.0641	1.0405	38.02	2	0	Median	NaN	NaN	NaN	0	0	Median	320270000	163220000	157040000	77222000	35495000	41727000	145800000	76743000	69061000	97239000	50984000	46254000	0	0	0	23840	4259	22590	148922;148923;148924;148925;148926	201298;201299;201300;201301;201302;201303;201304;201305;201306	201302			9	
IESDVQEPTEPEDDLDIMLGNK	1	Unmodified	2486.137	0.13702993	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	85.708	85.293	2;3	1.1841E-17	77640	160511_QHF_FH_JSI11i_1	136.51	124.9			1.1827	1.2006	10.199	8	2	Median	1.5548	1.2599	NaN	1	0	Median	1.2014	1.4275	11.71	2	0	Median	1.214	1.1675	0.22898	2	1	Median	1.1464	1.1957	3.8839	3	1	Median	499980000	222010000	277970000	42666000	15696000	26970000	155150000	76102000	79052000	120510000	55664000	64847000	181650000	74552000	107100000	23841	1169	22591	148927;148928;148929;148930;148931;148932;148933;148934;148935	201307;201308;201309;201310;201311;201312;201313;201314;201315;201316;201317;201318;201319;201320;201321;201322;201323	201309			17	
IESDVQEPTEPEDDLDIMLGNKK	2	Unmodified	2614.232	0.23199295	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.964	76.486	3	1.8523E-24	69263	160511_QHF_FH_JSI10i_1	164.65	157.2			0.92004	0.89479	10.558	4	1	Median	1.0996	0.91649	NaN	1	1	Median	0.93663	1.0903	NaN	1	0	Median	0.90374	0.87361	NaN	1	0	Median	0.81676	0.87234	NaN	1	0	Median	268880000	135440000	133440000	23714000	11144000	12571000	105120000	55440000	49683000	79360000	37448000	41912000	60681000	31403000	29277000	23842	1169	22592	148936;148937;148938;148939	201324;201325;201326;201327;201328;201329;201330;201331;201332	201330			9	
IESEGLLSLTTQLVK	1	Unmodified	1629.9189	0.91890272	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	100.6	100.48	2;3	1.2629E-07	86462	160511_QHF_FH_JSI12i_2	112.15	99.017			0.80509	0.81277	53.187	7	2	Median	0.80645	0.68773	NaN	1	0	Median	0.51574	0.58161	39.724	2	2	Median	1.4531	1.4346	80.357	2	0	Median	0.85063	0.92945	7.9705	2	0	Median	213110000	119180000	93927000	37613000	22203000	15410000	27232000	15803000	11428000	36391000	16790000	19601000	111870000	64385000	47488000	23843	3844	22593	148940;148941;148942;148943;148944;148945;148946	201333;201334;201335;201336;201337;201338;201339;201340;201341	201335			9	
IESFVETLK	1	Unmodified	1064.5754	0.57537657	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.944	56.013	2	0.0038717	48485	160511_QHF_FH_JSI11i_2	58.433	31.303			0.71423	0.76515	18.341	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66256	0.67208	NaN	1	0	Median	0.76993	0.8711	NaN	1	0	Median	140120000	91430000	48694000	0	0	0	0	0	0	89457000	55406000	34051000	50667000	36024000	14642000	23844	1682	22594	148947;148948	201342;201343;201344	201344			3	
IESGELDPER	0	Unmodified	1143.5408	0.54078198	1173	P20338	RAB4A	Ras-related protein Rab-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.011	26.431	2	0.00038461	23518	160511_QHF_FH_JSI12i_1	76.221	37.446			0.94751	1.1003	11.438	4	1	Linear	1.402	1.152	NaN	1	1	Median	1.0419	1.2146	NaN	1	0	Median	1.084	1.0508	NaN	1	0	Median	0.8945	0.93572	NaN	1	0	Median	438000000	199040000	238960000	109340000	40989000	68353000	105860000	49960000	55900000	98401000	48263000	50138000	124400000	59827000	64572000	23845	1173	22595	148949;148950;148951;148952	201345;201346;201347;201348;201349;201350	201348			6	
IESHETANLQDDRNSQSSSVSYLESK	1	Unmodified	2923.3432	0.34315139	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		39.54	39.54	4	4.9524E-08	34722	160511_QHF_FH_JSI11i_3	69.845	57.531			0.95225	0.87448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95225	0.87448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28453000	15837000	12616000	0	0	0	0	0	0	28453000	15837000	12616000	0	0	0	23846	3849	22596	148953	201351;201352	201351			2	
IESILMSLPLTAR	0	Unmodified	1442.8167	0.81668625	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	98.068	97.948	2	0.00036505	84478	160511_QHF_FH_JSI12i_2	81.865	55.267			1.0284	0.96208	46.699	10	7	Median	1.0866	0.94131	NaN	1	0	Median	0.68195	0.81999	5.6911	2	1	Median	1.124	1.0652	56.594	4	4	Median	2.2205	2.3631	46.953	3	2	Plateau	282240000	129970000	152270000	28500000	13947000	14553000	31322000	17998000	13325000	119440000	59758000	59681000	102980000	38265000	64714000	23847	1456	22597	148954;148955;148956;148957;148958;148959;148960;148961;148962;148963	201353;201354;201355;201356;201357;201358;201359;201360;201361;201362;201363;201364;201365	201356			13	
IESIQLMMDSETGR	0	Unmodified	1608.7487	0.74874262	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	69.044	68.32	2	8.384E-10	62106	160511_QHF_FH_JSI11i_1	106.01	97.787			0.78854	0.87589	7.0151	3	3	Median	NaN	NaN	NaN	0	0	Median	0.6564	0.78014	NaN	1	1	Median	0.86422	0.87589	NaN	1	1	Median	0.78854	0.88538	NaN	1	1	Median	257480000	138320000	119160000	0	0	0	82669000	46142000	36527000	89383000	46505000	42877000	85428000	45677000	39751000	23848	2538	22598	148964;148965;148966;148967;148968	201366;201367;201368;201369;201370	201366			5	
IESLPPLLIGK	1	Unmodified	1178.7275	0.72746054	3578	Q8N9N7	LRRC57	Leucine-rich repeat-containing protein 57	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	83.42	82.753	2	0.011203	72882	160511_QHF_FH_JSI9i_2	46.39	33.337			0.19351	0.20575	19.842	4	0	Median	0.27558	0.23051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.18666	0.18606	28.874	2	0	Median	0.16676	0.1855	NaN	1	0	Median	287300000	243700000	43592000	62523000	52259000	10264000	0	0	0	140240000	117310000	22933000	84532000	74137000	10394000	23849	3578	22599	148969;148970;148971;148972	201371	201371			1	
IESLSSQLSNLQK	1	Unmodified	1445.7726	0.77257283	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3							2	2	6	3	58.463	57.887	2;3	4.3991E-06	50712	160511_QHF_FH_JSI9i_2	124.42	87.079			1.0156	0.95912	23.86	13	10	Median	1.1367	0.95117	0.86631	2	1	Median	1.0867	1.2782	39.138	2	2	Median	1.0073	0.97965	26.728	6	6	Median	0.82692	0.88453	10.415	3	1	Median	1027200000	532030000	495150000	138680000	62471000	76212000	173000000	84448000	88556000	485410000	251860000	233550000	230080000	133250000	96831000	23850	1180	22600	148973;148974;148975;148976;148977;148978;148979;148980;148981;148982;148983;148984;148985	201372;201373;201374;201375;201376;201377;201378;201379;201380;201381;201382;201383;201384;201385	201381			14	
IESSIQPTSNMPNTSINRPEIK	1	Unmodified	2455.2377	0.23768745	2935	Q5T0W9	FAM83B	Protein FAM83B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		54.526	54.011	3	1.6603E-08	47944	160511_QHF_FH_JSI11i_3	97.271	75.468			1.0232	0.89918	44.693	2	1	Median	0.794	0.65553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3185	1.2334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57046000	29216000	27830000	25735000	17485000	8249900	0	0	0	31312000	11731000	19581000	0	0	0	23851	2935	22601	148986;148987	201386;201387	201386			2	
IESSLQEDEPENDAK	1	Unmodified	1702.7534	0.75335353	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.673	28.755	2	2.1664E-21	25706	160511_QHF_FH_JSI12i_1	175.48	26.592			1.0776	0.99455	17.309	2	0	Median	1.0779	0.87999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0772	1.124	NaN	1	0	Median	187870000	96096000	91777000	67846000	34556000	33289000	0	0	0	0	0	0	120030000	61540000	58487000	23852	4907	22602	148988;148989	201388;201389;201390	201388			3	
IESVHFSDQFSGPK	1	Unmodified	1576.7522	0.75217174	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.43		9	5						1	2	2	6	5	51.061	49.577	2;3	3.5834E-10	42370	160511_QHF_FH_JSI12i_3	111.86	90.483			0.94612	0.98561	22.574	12	2	Median	0.98824	0.83366	23.809	2	0	Median	0.69041	0.8411	22.293	2	0	Median	1.3345	1.2411	21.877	5	2	Median	0.96	1.0826	10.184	3	0	Median	2269700000	1023800000	1245900000	232220000	82639000	149580000	375670000	217030000	158640000	879700000	407140000	472550000	782080000	316990000	465090000	23853	3959	22603	148990;148991;148992;148993;148994;148995;148996;148997;148998;148999;149000;149001;149002;149003;149004	201391;201392;201393;201394;201395;201396;201397;201398;201399;201400;201401;201402;201403;201404;201405	201405			13	
IETAQELK	1	Unmodified	930.50221	0.50221163	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.329	18.848	2	0.030226	16397	160511_QHF_FH_JSI12i_1	41.631	6.0129			1.1047	1.161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1047	1.161	NaN	1	0	Median	94032000	39557000	54475000	0	0	0	0	0	0	0	0	0	94032000	39557000	54475000	23854	4477	22604	149005	201406	201406			1	
IETAVTSTPSASGQFSK	1	Unmodified	1709.8472	0.84719434	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.132	41.915	2	0.00062286	37180	160511_QHF_FH_JSI9i_1	65.043	54.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23855	1443	22605	149006	201407	201407			1	
IETDLPQIR	0	Unmodified	1083.5924	0.59242362	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		51.262	50.849	2	0.0042949	45964	160511_QHF_FH_JSI11i_1	58.596	22.039			0.79929	0.79335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79929	0.79335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	130060000	72501000	57563000	0	0	0	0	0	0	130060000	72501000	57563000	0	0	0	23856	2789	22606	149007;149008;149009	201408;201409;201410	201409			3	
IETELRDICNDVLSLLEK	1	Unmodified	2159.1144	0.11438442	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	102.14	102.11	2;3	5.8517E-12	90500	160511_QHF_FH_JSI10i_2	149.34	133.4			0.69895	0.86644	24.959	5	1	Median	NaN	NaN	NaN	0	0	Median	0.69895	0.86644	NaN	1	0	Median	0.71363	0.70949	35.703	2	0	Median	0.83212	0.84419	28.512	2	1	Median	1276300000	665070000	611180000	0	0	0	366280000	196230000	170050000	677030000	339550000	337480000	232940000	129290000	103650000	23857	2051	22607	149010;149011;149012;149013;149014	201411;201412;201413;201414	201413			4	
IETHLFAFEIYFR	0	Unmodified	1684.8613	0.86132826	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			90.096	82.878	3	0.00011707	45710	160513_QHF_FH_JSI9Kac_6	75.462	62.902			0.80168	0.81008	26.254	2	1	Median	0.78504	0.67283	NaN	1	1	Median	0.81867	0.97533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110570000	59445000	51124000	33650000	20222000	13428000	76919000	39222000	37697000	0	0	0	0	0	0	23858	4518	22608	149015;149016	201415;201416	201415			2	
IETIEVMEDR	0	Unmodified	1233.5911	0.59110299	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	50.542	49.69	2	0.00015907	45104	160511_QHF_FH_JSI12i_1	95.573	72.833			0.82309	0.93957	22.334	8	8	Median	1.2101	1.0269	NaN	1	1	Median	0.85838	1.0278	18.86	2	2	Median	0.92185	0.92063	40.255	2	2	Median	0.62385	0.66338	19.992	3	3	Plateau	5841600000	3536000000	2305600000	212760000	101300000	111460000	1578000000	1002600000	575410000	2317900000	1366400000	951530000	1732900000	1065700000	667240000	23859	1763	22609	149017;149018;149019;149020;149021;149022;149023;149024	201417;201418;201419;201420;201421;201422;201423;201424	201420			8	
IETINFHEVK	1	Unmodified	1228.6452	0.64518747	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	42.553	41.585	3	0.05729	36655	160511_QHF_FH_JSI10i_2	35.71	32.487			0.69519	0.73065	9.1653	4	0	Median	0.91747	0.80111	NaN	1	0	Median	0.51876	0.64395	NaN	1	0	Median	0.71356	0.71397	NaN	1	0	Median	0.67729	0.74771	NaN	1	0	Median	294090000	167500000	126590000	45678000	22229000	23449000	60916000	39710000	21206000	103350000	57123000	46232000	84137000	48433000	35704000	23860	5366	22610	149025;149026;149027;149028	201425	201425			0	
IETLDPALIRPGR	0	Unmodified	1449.8304	0.83036248	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.57	0.495		3	4							2	2	2	1	58.521	57.706	3	5.1721E-05	50640	160511_QHF_FH_JSI9i_2	87.641	71.291			0.91006	0.91484	11.803	7	0	Median	1.2513	1.0459	7.4561	2	0	Median	0.66147	0.79679	1.5047	2	0	Median	0.96863	0.94338	4.3443	2	0	Median	0.87801	0.90155	NaN	1	0	Median	1314400000	675220000	639150000	445960000	217670000	228290000	465690000	255160000	210530000	337100000	172630000	164460000	65617000	29757000	35860000	23861	1983	22611	149029;149030;149031;149032;149033;149034;149035	201426;201427;201428;201429;201430;201431;201432;201433;201434;201435;201436;201437;201438	201434			13	
IETMLGDVAVAVHPK	1	Unmodified	1578.844	0.84396364	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.442		11	4							3	3	6	3	70.353	69.508	2;3	1.4094E-09	61716	160511_QHF_FH_JSI10i_2	142.1	122.33			1.1817	1.0806	30.784	13	4	Median	1.3367	1.1093	2.4392	3	1	Median	0.66978	1.0328	17.097	3	0	Plateau	1.3136	1.2634	55.485	4	3	Median	0.88218	0.99404	12.421	3	0	Median	1886700000	870770000	1016000000	410790000	159030000	251760000	416440000	234510000	181930000	609180000	256070000	353110000	450330000	221160000	229170000	23862	1283	22612	149036;149037;149038;149039;149040;149041;149042;149043;149044;149045;149046;149047;149048;149049;149050	201439;201440;201441;201442;201443;201444;201445;201446;201447;201448;201449;201450;201451;201452;201453;201454;201455;201456;201457;201458;201459;201460	201459			21	
IETMLGDVAVAVHPK	1	Oxidation (M)	1594.8389	0.83887826	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		67.435	56.53	3	0.0029192	30507	160513_QHF_FH_JSI11Kac_5	60.401	46.684			1.9961	1.9586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9961	1.9586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1978200	623250	1355000	0	0	0	0	0	0	1978200	623250	1355000	0	0	0	23863	1283	22612	149051	201461	201461		920	1	
IETNENNLESAK	1	Unmodified	1360.647	0.64703797	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	24.551	21.401	2	8.5906E-32	18476	160511_QHF_FH_JSI10i_1	194.5	173.63			1.0075	1.0944	15.44	6	0	Median	1.0839	0.87471	NaN	1	0	Median	0.95374	1.1347	4.8722	2	0	Median	1.1649	1.1409	24.77	2	0	Median	1.0312	1.0925	NaN	1	0	Median	3116500000	1398400000	1718100000	908110000	323260000	584850000	727390000	425690000	301710000	679110000	268970000	410140000	801850000	380460000	421400000	23864	2252	22613	149052;149053;149054;149055;149056;149057	201462;201463;201464;201465;201466;201467;201468;201469;201470;201471;201472	201468			11	
IETSINLAWTAGSNNTR	0	Unmodified	1846.9173	0.91733959	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							1	3	4	2	69.363	68.838	2;3	2.2569E-07	62605	160511_QHF_FH_JSI10i_1	120.84	101.71			0.72938	0.70405	29.554	9	5	Median	0.81776	0.70405	NaN	1	0	Median	0.36772	0.43464	32.142	2	1	Median	0.87396	0.84724	13.791	4	3	Median	0.63215	0.67999	15.908	2	1	Median	245150000	136530000	108630000	19898000	10597000	9301100	46736000	36814000	9922400	109250000	52636000	56613000	69270000	36480000	32790000	23865	5499	22614	149058;149059;149060;149061;149062;149063;149064;149065;149066;149067	201473;201474;201475;201476;201477;201478;201479;201480;201481	201476			9	
IETVISDEEVIK	1	Unmodified	1373.729	0.72897668	4783	Q9H8H0	NOL11	Nucleolar protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			28.663	27.679	3	0.056125	23893	160511_QHF_FH_JSI9i_2	11.919	0.33624			2.0513	2.1102	24.483	2	0	Median	2.9048	2.5091	NaN	1	0	Median	1.4486	1.7748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82811000	29847000	52964000	43075000	13954000	29121000	39736000	15893000	23843000	0	0	0	0	0	0	23866	4783	22615	149068;149069	201482;201483	201482			2	
IETVNESWNALATPSDK	1	Unmodified	1873.9058	0.90577185	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	65.659	65.106	2;3	1.2185E-65	58870	160511_QHF_FH_JSI10i_1	232.37	190.04			1.0156	0.90986	22.915	7	1	Median	1.022	0.85152	NaN	1	0	Median	0.62395	0.74877	27.558	2	1	Median	1.086	1.0498	22.974	2	0	Median	1.0487	1.0985	1.3723	2	0	Median	575680000	318450000	257230000	86932000	39580000	47352000	177320000	116750000	60566000	149240000	77124000	72121000	162190000	84994000	77193000	23867	1194	22616	149070;149071;149072;149073;149074;149075;149076	201484;201485;201486;201487;201488;201489;201490;201491;201492;201493;201494;201495	201492			11	
IETWHKPDLGTLENVHGLDPNTWK	2	Unmodified	2799.398	0.39802792	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			8									2	6	83.084	82.932	4;5	0.0012464	71533	160511_QHF_FH_JSI12i_3	42.384	31.481			0.83716	0.84408	17.004	8	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83716	0.79443	3.511	2	1	Median	0.82792	0.88521	19.089	6	4	Median	423720000	240390000	183330000	0	0	0	0	0	0	82595000	42454000	40141000	341130000	197940000	143190000	23868	1636	22617	149077;149078;149079;149080;149081;149082;149083;149084	201496;201497;201498;201499;201500;201501;201502;201503;201504	201502			9	
IEVEIPK	1	Unmodified	826.48002	0.48001963	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.098	48.596	2	0.023013	43648	160511_QHF_FH_JSI10i_1	58.981	26.511			1.0814	1.0301	25.783	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64731	0.76225	NaN	1	1	Median	1.0814	1.0301	NaN	1	0	Median	1.2411	1.2733	NaN	1	0	Median	284390000	145380000	139010000	0	0	0	89067000	49552000	39515000	106750000	56903000	49844000	88572000	38921000	49650000	23869	3778	22618	149085;149086;149087	201505;201506	201506			2	
IEVEKPFAIAK	2	Unmodified	1243.7176	0.71762413	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.599	1	8	7							3	4	5	4	51.871	51.033	2;3	5.4783E-07	43825	160511_QHF_FH_JSI12i_3	125.48	78.282			1.0932	1.0399	21.31	16	2	Median	1.0978	0.86829	3.9508	3	0	Plateau	0.81655	0.96233	16.548	4	1	Median	1.0885	1.1163	28.271	5	1	Median	1.2556	1.3072	10.282	4	0	Median	9075500000	4268900000	4806500000	634760000	258100000	376670000	1282900000	621870000	661060000	2639500000	1178700000	1460800000	4518300000	2210200000	2308100000	23870	1224	22619	149088;149089;149090;149091;149092;149093;149094;149095;149096;149097;149098;149099;149100;149101;149102;149103	201507;201508;201509;201510;201511;201512;201513;201514;201515;201516;201517;201518;201519;201520;201521;201522;201523;201524;201525;201526;201527;201528;201529;201530;201531;201532;201533	201533			27	
IEVEKPFAIAK	2	Acetyl (K)	1285.7282	0.72818882	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	78.834	68.272	2	1.6963E-05	36313	160513_QHF_FH_JSI11Kac_5	103.7	73.446			0.62267	0.6117	72.898	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2145	1.4233	16.274	2	0	Median	0.47167	0.46746	38.032	2	0	Median	0.29213	0.31696	NaN	1	0	Median	56463000	32694000	23769000	0	0	0	26719000	12257000	14462000	21601000	13696000	7905100	8142900	6741400	1401500	23871	1224	22619	149104;149105;149106;149107;149108	201534;201535;201536;201537;201538	201538	1098		5	
IEVEKPFAIAKE	2	Unmodified	1372.7602	0.76021723	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.722	2	5	5							2	3	4	3	53.458	52.828	2;3	0.00046127	45196	160511_QHF_FH_JSI12i_3	59.185	45.505			1.1583	1.0527	24.96	12	0	Median	1.166	1.012	6.7446	2	0	Median	0.68964	0.86748	17.391	3	0	Median	1.1468	1.0696	11.118	4	0	Median	1.2523	1.2585	25.575	3	0	Plateau	3729100000	1700800000	2028200000	350420000	136740000	213680000	419640000	212830000	206810000	1101400000	574000000	527360000	1857700000	777280000	1080400000	23872	1224	22620	149109;149110;149111;149112;149113;149114;149115;149116;149117;149118;149119;149120	201539;201540;201541;201542;201543;201544;201545;201546;201547;201548;201549;201550;201551;201552;201553;201554	201551			15	
IEVFVQTLLHLAAK	1	Unmodified	1580.929	0.92901389	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		1	3	93.652	84.371	2;3	4.8074E-05	45775	160513_QHF_FH_JSI12Kac_6	128.22	85.434			0.5877	0.50114	108.85	3	3	Plateau	0.5877	0.50114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63649	0.59877	NaN	1	1	Median	3.4022	3.5867	NaN	1	1	Median	334070000	202780000	131290000	121540000	67879000	53665000	0	0	0	78652000	53280000	25372000	133870000	81620000	52255000	23873	2284	22621	149121;149122;149123;149124;149125	201555;201556;201557;201558;201559	201558			5	
IEVGDVNPSETQYISEPK	1	Unmodified	2003.9688	0.96876604	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	64.581	63.872	2	0.00021705	56710	160511_QHF_FH_JSI9i_1	71.241	52.03			1.9267	1.6347	17.19	3	3	Median	2.069	1.6347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3981	1.3536	NaN	1	1	Median	1.9267	1.9079	NaN	1	1	Median	59370000	14669000	44701000	25709000	5660100	20049000	0	0	0	18756000	5127900	13628000	14905000	3881200	11024000	23874	3331	22622	149126;149127;149128;149129	201560;201561;201562;201563	201563			4	
IEVGLVVGNSQVAFEK	1	Unmodified	1687.9145	0.91448604	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	81.092	79.94	2	8.9844E-05	69110	160511_QHF_FH_JSI12i_2	98.353	81.722			0.93017	0.99509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93017	0.99509	NaN	1	1	Median	7759400	2824700	4934700	0	0	0	0	0	0	0	0	0	7759400	2824700	4934700	23875	1586	22623	149130;149131	201564;201565	201564			2	
IEVIEIMTDR	0	Unmodified	1217.6326	0.63257388	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.57	4	4	4				2	5	3	5	7	4	6	76.311	71.485	2	1.5622E-17	33941	160513_QHF_FH_JSI12Kac_5	168.83	126.72			0.91025	0.9999	13.803	22	0	Median	1.0573	0.90663	18.769	5	0	Median	0.83823	1.0031	11.914	7	0	Median	1.0964	1.065	4.1702	4	0	Median	0.87984	0.94204	14.046	6	0	Median	7673600000	4000100000	3673600000	1024400000	495410000	529020000	1764300000	1010600000	753690000	2560500000	1244400000	1316100000	2324400000	1249700000	1074700000	23876	936	22624	149132;149133;149134;149135;149136;149137;149138;149139;149140;149141;149142;149143;149144;149145;149146;149147;149148;149149;149150;149151;149152;149153	201566;201567;201568;201569;201570;201571;201572;201573;201574;201575;201576;201577;201578;201579;201580;201581;201582;201583;201584;201585;201586;201587;201588;201589;201590;201591;201592;201593;201594;201595;201596;201597;201598;201599;201600;201601;201602;201603;201604;201605;201606;201607;201608;201609;201610;201611;201612;201613	201599			48	
IEVIEIMTDR	0	Oxidation (M)	1233.6275	0.6274885	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.738						1	4	7	1	1	4	1	7	64.775	54.228	2	6.6281E-07	27305	160513_QHF_FH_JSI10Kac_5	129.38	87.274			0.95604	1.0859	18.362	13	0	Median	1.275	1.0859	NaN	1	0	Median	0.86485	1.0336	29.187	4	0	Median	1.1305	1.1138	NaN	1	0	Median	0.89943	0.97204	15.353	7	0	Median	497470000	258920000	238550000	26015000	11199000	14817000	194800000	105660000	89143000	41552000	19686000	21866000	235100000	122370000	112720000	23877	936	22624	149154;149155;149156;149157;149158;149159;149160;149161;149162;149163;149164;149165;149166	201614;201615;201616;201617;201618;201619;201620;201621;201622;201623;201624;201625	201624		511	12	
IEVIKPGDLGVDLTSK	2	Unmodified	1682.9455	0.94545182	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	74.931	74.05	3	0.00066082	63951	160511_QHF_FH_JSI12i_2	66.335	54.567			0.8623	0.84102	19.995	3	3	Median	NaN	NaN	NaN	0	0	Median	0.60528	0.73409	NaN	1	1	Median	0.8623	0.84102	NaN	1	1	Median	0.94923	1.0882	NaN	1	1	Median	199770000	102040000	97729000	0	0	0	52088000	28900000	23187000	82024000	42281000	39743000	65655000	30856000	34799000	23878	1473	22625	149167;149168;149169;149170	201626;201627;201628;201629;201630	201626			5	
IEVLEEELR	0	Unmodified	1128.6027	0.60265396	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	57.959	57.216	2	0.00017327	51663	160511_QHF_FH_JSI10i_1	87.308	58.581			0.9393	0.92389	12.633	7	0	Median	1.0447	0.89022	NaN	1	0	Median	0.73532	0.87519	13.855	2	0	Median	1.0366	1.0339	15.907	2	0	Median	0.92239	0.98661	12.821	2	0	Median	1379800000	663420000	716420000	172600000	68093000	104500000	410730000	210970000	199760000	450490000	227130000	223360000	346020000	157230000	188800000	23879	1085	22626	149171;149172;149173;149174;149175;149176;149177	201631;201632;201633;201634;201635;201636;201637;201638;201639	201638			9	
IEVLQQHENEDIYK	1	Unmodified	1756.8632	0.86317875	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								3	2	1	2	45.106	44.062	2;3	3.4579E-15	37716	160511_QHF_FH_JSI12i_2	157.09	144.92			0.96809	0.94446	19.769	6	1	Median	1.0326	0.88282	NaN	1	0	Median	0.6482	0.77903	13.345	2	1	Median	1.1858	1.2124	NaN	1	0	Median	0.96809	1.0687	7.9276	2	0	Median	841070000	424160000	416900000	121810000	41643000	80163000	205610000	125980000	79635000	286300000	130150000	156160000	227350000	126400000	100950000	23880	147	22627	149178;149179;149180;149181;149182;149183;149184;149185	201640;201641;201642;201643;201644;201645;201646;201647;201648;201649	201640			10	
IEVLYEDEGFR	0	Unmodified	1368.6561	0.65614609	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	63.77	62.92	2	0.00025292	53883	160511_QHF_FH_JSI12i_2	78.655	57.192			1.0393	1.0287	11.912	5	1	Median	1.1923	1.0287	NaN	1	0	Median	0.78715	0.95953	NaN	1	1	Median	1.0393	1.06	NaN	1	0	Median	1.0263	1.096	21.096	2	0	Median	502670000	271800000	230870000	79507000	33135000	46373000	90080000	56969000	33112000	135780000	69278000	66500000	197310000	112420000	84889000	23881	4272	22628	149186;149187;149188;149189;149190	201650;201651;201652;201653;201654;201655	201650			6	
IEVLYGDEHVAQSPYILK	1	Unmodified	2073.0783	0.078256906	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	73.88	72.896	3	4.2629E-06	62958	160511_QHF_FH_JSI12i_2	94.882	62.066			1.0577	1.1142	29.524	4	2	Median	NaN	NaN	NaN	0	0	Median	0.54414	0.66735	NaN	1	0	Median	1.0849	1.1408	NaN	1	0	Median	1.1223	1.1966	13.422	2	2	Median	128780000	68020000	60759000	0	0	0	33371000	18970000	14402000	39435000	19561000	19874000	55972000	29489000	26483000	23882	3272	22629	149191;149192;149193;149194	201656;201657;201658;201659;201660	201656			5	
IEVPLYSLLEQTHLK	1	Unmodified	1781.9927	0.99273636	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	101.19	101.1	3	2.5718E-52	90170	160511_QHF_FH_JSI11i_3	214.65	207.93			1.0708	1.0794	19.39	8	1	Median	1.2271	1.0239	16.247	2	1	Median	0.76624	0.92504	20.039	2	0	Median	1.1959	1.1881	11.789	2	0	Median	1.1686	1.2517	26.058	2	0	Median	4031200000	1968900000	2062300000	651610000	323720000	327900000	554370000	305280000	249090000	1393000000	621840000	771130000	1432300000	718090000	714190000	23883	3852	22630	149195;149196;149197;149198;149199;149200;149201;149202	201661;201662;201663;201664;201665;201666;201667;201668;201669;201670;201671;201672;201673	201661			13	
IEVQDTSGGTTALRPSASTQALSSSVSSSK	1	Unmodified	2951.4684	0.4683519	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.825	6	6	7							4	7	5	3	56.379	55.536	3;4	2.2406E-38	49374	160511_QHF_FH_JSI11i_3	148.66	136.02			0.97881	0.98369	13.257	18	2	Median	1.177	0.98484	2.8427	4	0	Median	0.78823	0.96153	21.623	6	2	Median	0.97883	0.91938	7.3927	5	0	Median	0.97878	1.0372	13.75	3	0	Median	2598000000	1287900000	1310100000	581020000	253510000	327500000	811320000	451110000	360210000	853350000	427960000	425390000	352280000	155290000	196990000	23884	2734	22631	149203;149204;149205;149206;149207;149208;149209;149210;149211;149212;149213;149214;149215;149216;149217;149218;149219;149220;149221	201674;201675;201676;201677;201678;201679;201680;201681;201682;201683;201684;201685;201686;201687;201688;201689;201690;201691;201692;201693;201694;201695;201696;201697;201698;201699;201700;201701;201702;201703;201704;201705;201706;201707;201708	201675			35	
IEWLESHQDADIEDFK	1	Unmodified	1973.9007	0.90068647	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.14		26	9						2	9	6	8	14	73.15	71.788	2;3	3.0155E-65	63700	160511_QHF_FH_JSI10i_2	228.07	208.94			1.0599	1.1558	14.81	27	10	Median	1.3824	1.1935	13.595	5	4	Median	0.8081	0.99774	12.961	5	3	Median	1.1671	1.1772	22.544	7	1	Median	1.0788	1.142	8.9137	10	2	Median	7135600000	2862900000	4272700000	447030000	199790000	247240000	1570200000	766000000	804230000	2287800000	794170000	1493700000	2830500000	1102900000	1727600000	23885	982	22632	149222;149223;149224;149225;149226;149227;149228;149229;149230;149231;149232;149233;149234;149235;149236;149237;149238;149239;149240;149241;149242;149243;149244;149245;149246;149247;149248;149249;149250;149251;149252;149253;149254;149255;149256;149257;149258	201709;201710;201711;201712;201713;201714;201715;201716;201717;201718;201719;201720;201721;201722;201723;201724;201725;201726;201727;201728;201729;201730;201731;201732;201733;201734;201735;201736;201737;201738;201739;201740;201741;201742;201743;201744;201745;201746;201747;201748;201749;201750;201751;201752;201753;201754;201755;201756;201757;201758;201759;201760;201761;201762;201763;201764;201765;201766;201767;201768;201769;201770;201771;201772;201773;201774;201775;201776;201777;201778;201779;201780;201781;201782;201783;201784;201785;201786;201787;201788;201789;201790;201791;201792;201793	201772			85	
IEYDTFGELK	1	Unmodified	1213.5867	0.58666954	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	3	2	3	60.888	59.071	2	5.5871E-05	52488	160511_QHF_FH_JSI9i_1	91.867	61.7			0.98295	0.9824	8.5583	11	1	Median	1.3313	1.0889	11.999	3	0	Plateau	0.75377	0.87647	1.6657	3	1	Median	1.0128	0.99344	1.5807	2	0	Median	0.92403	0.98393	4.1422	3	0	Plateau	5660800000	2837300000	2823500000	1406600000	623950000	782670000	1590600000	945430000	645170000	1314700000	601890000	712780000	1348900000	666030000	682850000	23886	887	22633	149259;149260;149261;149262;149263;149264;149265;149266;149267;149268;149269	201794;201795;201796;201797;201798;201799;201800;201801;201802;201803;201804;201805;201806;201807;201808;201809;201810;201811;201812	201805			19	
IEYEPFRK	1	Unmodified	1080.5604	0.56039521	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	32.204	32.157	3	0.00091834	27773	160511_QHF_FH_JSI11i_3	70.856	42.129			1.4979	1.4761	78.116	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6991	2.5646	NaN	1	0	Median	0.83129	0.84964	NaN	1	0	Median	535290000	247510000	287780000	0	0	0	0	0	0	165520000	46437000	119080000	369770000	201080000	168700000	23887	3216	22634	149270;149271	201813;201814	201813			2	
IEYNDQNDGSCDVK	1	Unmodified	1655.6733	0.67332907	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	22.069	21.542	2	4.5502E-08	18335	160511_QHF_FH_JSI9i_1	100.55	64.22			0.92873	0.85178	23.838	4	2	Median	0.90302	0.72078	NaN	1	1	Median	1.0227	1.167	NaN	1	0	Median	0.77236	0.72844	NaN	1	1	Median	0.95516	0.99599	NaN	1	0	Median	94764000	51203000	43561000	11414000	7721100	3693100	21630000	11073000	10558000	23254000	17117000	6136100	38466000	15291000	23175000	23888	512	22635	149272;149273;149274;149275;149276	201815;201816;201817;201818;201819;201820	201820			6	
IEYNESMK	1	Unmodified	1012.4535	0.45354688	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.536	21.33	2	0.03296	18041	160511_QHF_FH_JSI9i_1	41.029	24.253			1.9558	1.6268	NaN	1	0	Median	1.9558	1.6268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98040000	39760000	58280000	98040000	39760000	58280000	0	0	0	0	0	0	0	0	0	23889	3936	22636	149277	201821	201821			1	
IEYQFFEDR	0	Unmodified	1245.5666	0.5666028	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.6	5.2		4						1		2	1	1	1	63.568	60.721	2	0.00056389	53431	160511_QHF_FH_JSI9i_2	78.334	62.132			1.0972	1.1252	17.323	5	0	Median	1.2892	1.0759	29.64	2	0	Median	0.8719	1.0643	NaN	1	0	Median	1.0972	1.1252	NaN	1	0	Median	1.1848	1.3184	NaN	1	0	Median	478330000	230700000	247640000	92274000	37861000	54412000	124280000	63672000	60605000	137340000	70878000	66461000	124440000	58285000	66158000	23890	5135	22637	149278;149279;149280;149281;149282	201822;201823;201824;201825;201826	201823			5	
IEYVHTK	1	Unmodified	888.47052	0.47051757	1633	P48729;Q8N752	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	11.747	11.276	2	0.063659	8587	160511_QHF_FH_JSI11i_2	40.268	13.306			0.64985	0.66969	5.9397	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7036	0.69842	NaN	1	0	Median	0.60021	0.64215	NaN	1	0	Median	91146000	45442000	45704000	0	0	0	0	0	0	50607000	23145000	27462000	40539000	22297000	18242000	23891	1633	22638	149283;149284	201827	201827			1	
IFALAFVK	1	Unmodified	907.55312	0.55312499	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	80.572	76.077	2	0.0026311	39951	160513_QHF_FH_JSI11Kac_6	89.673	63.565			1.0737	1.078	7.4319	8	1	Median	1.2724	1.0643	5.4811	2	1	Median	0.93989	1.0925	10.704	2	0	Median	1.0689	1.0104	11.957	2	0	Median	1.0476	1.0905	4.4236	2	0	Median	512980000	250140000	262840000	152510000	66749000	85765000	112210000	63229000	48984000	145910000	68467000	77443000	102350000	51700000	50646000	23892	2511	22639	149285;149286;149287;149288;149289;149290;149291;149292	201828;201829;201830;201831;201832;201833;201834;201835	201830			8	
IFALLAGK	1	Unmodified	831.52182	0.52182486	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	63.099	62.374	2	0.033293	55183	160511_QHF_FH_JSI11i_3	49.358	18.914			5.6069	5.8223	225.3	7	7	Median	7.2857	5.8223	NaN	1	1	Median	1.0871	1.2373	231.98	2	2	Median	1.0214	0.98228	330.42	2	2	Median	0.87282	0.89557	338.7	2	2	Median	1415100000	655130000	760020000	207410000	53472000	153940000	327500000	170420000	157080000	343270000	166720000	176550000	536970000	264520000	272450000	23893	1790	22640	149293;149294;149295;149296;149297;149298;149299	201836;201837;201838;201839;201840;201841;201842	201836			7	
IFANTESYLK	1	Unmodified	1184.6077	0.60773933	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.5	6.5		2						2				2	2	54.03	48.16	2	0.003101	41311	160511_QHF_FH_JSI12i_2	56.916	31.778			0.99049	1.0574	16.717	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0937	1.098	7.1872	2	0	Median	0.84326	0.91908	21.684	2	0	Median	416420000	214000000	202420000	0	0	0	0	0	0	242090000	122060000	120030000	174330000	91941000	82393000	23894	2284	22641	149300;149301;149302;149303	201843;201844;201845	201844			3	
IFANTPDSGCVLGMR	0	Unmodified	1636.7701	0.77014677	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	62.312	61.692	2	1.043E-09	53685	160511_QHF_FH_JSI11i_2	145.55	104.01			1.0608	1.0757	23.144	7	1	Median	1.0608	0.91484	NaN	1	0	Median	0.87273	1.0757	NaN	1	1	Median	0.96227	0.97223	10.777	3	0	Median	1.4217	1.5057	16.557	2	0	Median	566770000	278860000	287920000	41521000	14734000	26787000	70752000	35797000	34955000	277040000	154760000	122280000	177460000	73570000	103890000	23895	897	22642	149304;149305;149306;149307;149308;149309;149310	201846;201847;201848;201849;201850;201851;201852;201853;201854;201855;201856;201857	201854			12	
IFAPNHVVAK	1	Unmodified	1094.6237	0.62366417	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.1		8	13					1	8	10	6	8	6	30.461	27.062	2;3	2.5349E-10	22286	160511_QHF_FH_JSI10i_3	131.44	90.41			0.90737	0.89972	72.497	29	3	Median	1.042	0.87849	100.78	10	2	Median	0.87076	1.0666	16.959	6	0	Median	0.9414	0.92187	87.598	7	1	Median	0.86917	0.8882	13.435	6	0	Median	41800000000	19558000000	22242000000	10359000000	4042400000	6316800000	6575000000	3127100000	3447900000	10928000000	5112900000	5815000000	13938000000	7276000000	6662000000	23896	2190	22643	149311;149312;149313;149314;149315;149316;149317;149318;149319;149320;149321;149322;149323;149324;149325;149326;149327;149328;149329;149330;149331;149332;149333;149334;149335;149336;149337;149338;149339;149340	201858;201859;201860;201861;201862;201863;201864;201865;201866;201867;201868;201869;201870;201871;201872;201873;201874;201875;201876;201877;201878;201879;201880;201881;201882;201883;201884;201885;201886;201887;201888;201889;201890;201891;201892;201893;201894;201895;201896;201897;201898;201899;201900;201901;201902;201903;201904;201905;201906;201907;201908;201909;201910;201911;201912;201913;201914;201915;201916;201917;201918;201919;201920;201921;201922;201923	201870			66	
IFAPNHVVAKSR	1	Acetyl (K)	1379.7674	0.76736829	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	43.902	34.648	3	5.1146E-05	18954	160513_QHF_FH_JSI11Kac_6	89.231	75.551			0.65747	0.70513	163.36	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.6541	1.9625	NaN	1	0	Median	0.26132	0.25336	NaN	1	0	Median	0.070797	0.077728	NaN	1	1	Median	41752000	24022000	17731000	0	0	0	19172000	6687600	12484000	19129000	13980000	5149600	3450700	3354300	96457	23897	2190	22644	149341;149342;149343	201924;201925;201926	201924	2301		3	
IFAQDGEGQR	0	Unmodified	1119.5309	0.530886	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.86	5	4					2			2	3	3	3	15.573	13.79	2	0.00036493	11575	160511_QHF_FH_JSI9i_2	76.827	68.294			0.88961	0.81711	12.021	11	3	Linear	1.126	0.9291	0.68932	2	0	Median	0.7138	0.85325	17.986	3	2	Plateau	0.87817	0.86658	8.4118	3	1	Plateau	0.84095	0.90655	17.391	3	0	Plateau	1600900000	843260000	757650000	268320000	123420000	144900000	594590000	321760000	272830000	423680000	201630000	222050000	314320000	196440000	117870000	23898	512	22645	149344;149345;149346;149347;149348;149349;149350;149351;149352;149353;149354	201927;201928;201929;201930;201931;201932;201933;201934;201935;201936;201937;201938;201939	201936			13	
IFAQDGEGQRIDIQMK	1	Unmodified	1847.92	0.91998213	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	53.065	52.429	3	0.00019329	45020	160511_QHF_FH_JSI12i_3	68.257	48.933			1.038	0.99731	12.335	5	0	Median	1.1603	0.99731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0917	1.0686	21.172	2	0	Median	0.92439	0.97328	8.3162	2	0	Median	525650000	277320000	248320000	59308000	30398000	28910000	0	0	0	213720000	100880000	112840000	252620000	146040000	106580000	23899	512	22646	149355;149356;149357;149358;149359	201940;201941;201942	201942			3	
IFAQYLVPHNLETEER	0	Unmodified	1957.9898	0.98977625	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	68.983	68.191	3	1.0587E-06	57178	160511_QHF_FH_JSI10i_3	109.35	97.067			0.95827	1.0642	19.036	7	2	Median	1.2749	1.0688	15.661	2	1	Median	0.90055	1.0824	2.3997	2	0	Median	0.86222	0.85847	35.1	2	1	Median	0.95827	0.96146	NaN	1	0	Median	948120000	446710000	501410000	123200000	54427000	68771000	231350000	114760000	116590000	432170000	193470000	238700000	161400000	84052000	77348000	23900	2789	22647	149360;149361;149362;149363;149364;149365;149366	201943;201944;201945;201946;201947;201948;201949;201950;201951;201952;201953;201954	201946			12	
IFAQYMVPHNLETTER	0	Unmodified	1947.9513	0.95128225	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.814	61.988	3	2.7627E-05	51929	160511_QHF_FH_JSI10i_3	83.418	74.598			1.0315	0.99405	4.8031	4	1	Median	1.2859	1.041	NaN	1	0	Median	0.82297	0.93483	NaN	1	0	Median	1.0367	0.97122	NaN	1	0	Median	1.0262	1.0174	NaN	1	1	Median	458250000	237380000	220870000	36962000	18278000	18684000	128780000	62946000	65832000	215830000	116200000	99638000	76674000	39961000	36712000	23901	4988	22648	149367;149368;149369;149370	201955;201956;201957;201958;201959;201960;201961	201957			7	
IFASIAPSIYGHEDIK	1	Unmodified	1759.9145	0.91448604	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	4.62		1	5						1	1	1	1	4	68.388	66.345	2;3	2.9134E-10	57555	160511_QHF_FH_JSI12i_3	147.24	114.3			1.0485	1.0131	40.478	7	5	Median	1.0485	0.86552	NaN	1	1	Median	0.61368	0.68737	NaN	1	1	Median	0.66227	0.60819	NaN	1	1	Median	1.2861	1.3721	26.863	4	2	Median	1513800000	913410000	600390000	69096000	31651000	37445000	137080000	84529000	52549000	40898000	21468000	19430000	1266700000	775760000	490970000	23902	1674	22649	149371;149372;149373;149374;149375;149376;149377	201962;201963;201964;201965;201966;201967;201968;201969	201968			8	
IFASIAPSIYGHEDIKR	1	Unmodified	1916.0156	0.01559707	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			59.669	58.137	4	1.5702E-05	47656	160511_QHF_FH_JSI9i_3	90.348	79.69			0.73769	0.72041	190.73	2	2	Median	3.4052	2.7753	NaN	1	1	Median	0.15981	0.18701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54728000	29169000	25559000	29254000	5955300	23299000	25473000	23214000	2259500	0	0	0	0	0	0	23903	1674	22650	149378;149379	201970;201971	201971			2	
IFASIAPSIYGHEDIKR	1	Acetyl (K)	1958.0262	0.026161756	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.384	66.047	3	0.0016501	35969	160513_QHF_FH_JSI11Kac_6	68.494	53.073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23904	1674	22650	149380	201972	201972	1696		1	
IFAVAATYPYQVVR	0	Unmodified	1596.8664	0.86641364	4671	Q9H2D1	SLC25A32	Mitochondrial folate transporter/carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	3	4	1	77.833	74.455	2	9.9727E-37	38549	160513_QHF_FH_JSI11Kac_6	175.93	142.05			1.1564	1.094	20.493	8	2	Median	1.4137	1.2055	21.921	2	1	Median	0.81492	0.96944	17.78	2	0	Median	1.2831	1.2299	11.73	3	1	Median	0.70973	0.79761	NaN	1	0	Median	304480000	139550000	164930000	62636000	28070000	34566000	89419000	47437000	41983000	116060000	47257000	68807000	36358000	16788000	19571000	23905	4671	22651	149381;149382;149383;149384;149385;149386;149387;149388;149389;149390	201973;201974;201975;201976;201977;201978;201979;201980;201981;201982;201983;201984;201985;201986;201987	201979			15	
IFCVHGGLSPSIQTLDQIR	0	Unmodified	2140.1099	0.10990816	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			79.867	78.507	3	2.8136E-11	65833	160511_QHF_FH_JSI10i_3	136.2	120.78			1.2154	1.1607	4.7763	2	0	Median	1.4962	1.2006	NaN	1	0	Median	0.98721	1.1222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59117000	34194000	24923000	24644000	11015000	13629000	34473000	23178000	11295000	0	0	0	0	0	0	23906	1912	22652	149391;149392	201988;201989;201990;201991;201992	201989			5	
IFDANTKPNLNLQVLSNPEFLAEGTAIK	2	Unmodified	3056.6183	0.61825103	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	101.08	101.06	3;4	9.3394E-70	87705	160511_QHF_FH_JSI12i_3	215.53	209.09			0.98946	0.95905	9.3511	6	0	Median	0.93733	0.80348	NaN	1	0	Median	0.78548	0.9541	NaN	1	0	Median	1.0743	1.0016	5.5685	2	0	Median	0.98946	0.99354	5.5686	2	0	Median	1414300000	745540000	668750000	86827000	47413000	39414000	122020000	70386000	51637000	567830000	286480000	281350000	637600000	341260000	296350000	23907	440	22653	149393;149394;149395;149396;149397;149398	201993;201994;201995;201996;201997	201995			5	
IFDDAYK	1	Unmodified	870.41233	0.41233399	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	26.376	25.715	2	0.043362	22184	160511_QHF_FH_JSI9i_1	45.718	26.241			1.0115	1.0517	11.233	3	0	Median	1.3244	1.0707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89487	0.87408	NaN	1	0	Median	1.0115	1.0517	NaN	1	0	Median	181930000	81945000	99989000	49320000	16115000	33206000	0	0	0	57702000	28983000	28719000	74911000	36847000	38064000	23908	1586	22654	149399;149400;149401	201998	201998			1	
IFDDVSSGVSQLASK	1	Unmodified	1551.7781	0.77805214	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	62.198	61.526	2;3	0.0010319	55659	160511_QHF_FH_JSI10i_1	65.043	49.153			1.0848	1.0564	19.359	7	3	Median	1.3871	1.1321	1.5164	2	1	Median	0.71896	0.84433	NaN	1	0	Median	1.0348	1.0065	6.8408	2	0	Median	0.92318	0.9569	39.569	2	2	Median	489330000	250870000	238460000	155930000	65359000	90570000	90417000	56478000	33939000	122480000	60680000	61797000	120500000	68349000	52155000	23909	3561	22655	149402;149403;149404;149405;149406;149407;149408	201999;202000;202001;202002;202003;202004;202005;202006	202005			7	
IFDEILVNAADNK	1	Unmodified	1460.7511	0.75110911	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		2	2	69.027	68.132	2;3	2.3374E-06	59550	160511_QHF_FH_JSI11i_2	121.02	66.04			0.54879	0.61163	55.474	5	5	Median	0.35724	0.30601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70485	0.70096	80.182	2	2	Median	0.64034	0.70169	19.426	2	2	Median	524950000	352640000	172320000	120960000	83720000	37240000	0	0	0	206440000	133090000	73348000	197560000	135830000	61729000	23910	999;2197	22656	149409;149410;149411;149412;149413	202007;202008;202009;202010;202011	202011			5	
IFDIDEAEEGVK	1	Unmodified	1363.6507	0.65072636	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.526	58.881	2	6.5304E-05	52332	160511_QHF_FH_JSI9i_1	96.171	68.917			0.71997	0.74705	3.8735	4	0	Median	0.95211	0.773	NaN	1	0	Median	0.63396	0.7492	NaN	1	0	Median	0.7297	0.7043	NaN	1	0	Median	0.71036	0.74491	NaN	1	0	Median	2298200000	1259900000	1038300000	638060000	309020000	329040000	506090000	301970000	204120000	559360000	319020000	240340000	594660000	329880000	264780000	23911	1169	22657	149414;149415;149416;149417	202012;202013;202014;202015;202016;202017;202018;202019;202020;202021;202022	202020			11	
IFDLQDWTQEDERDK	1	Unmodified	1936.8803	0.88028538	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	68.98	68.056	3	0.033252	59974	160511_QHF_FH_JSI9i_2	36.029	24.767			0.77007	1.2532	35.943	3	2	Plateau	0.77007	0.68718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2723	1.2922	NaN	1	0	Median	0.61931	0.69983	NaN	1	1	Median	171120000	81620000	89501000	36495000	18778000	17716000	0	0	0	84114000	33756000	50358000	50512000	29086000	21426000	23912	5223	22658	149418;149419;149420	202023;202024;202025	202024			2	
IFDPQNPDENE	0	Unmodified	1316.5521	0.55207495	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.73	5			1						1	1	3	1	40.184	37.853	2	0.00014317	34422	160511_QHF_FH_JSI12i_1	83.783	83.28			0.92067	0.98796	16.049	5	1	Median	1.2858	1.0699	NaN	1	0	Median	0.88134	1.0537	NaN	1	0	Median	0.8538	0.8438	22.305	2	1	Median	0.92067	0.96732	NaN	1	0	Median	421700000	215240000	206460000	79496000	38086000	41410000	129970000	71156000	58810000	102770000	50917000	51850000	109470000	55080000	54387000	23913	1583	22659	149421;149422;149423;149424;149425;149426	202026;202027;202028;202029;202030;202031;202032;202033;202034	202028			9	
IFDSEEILAGYK	1	Unmodified	1383.6922	0.69219725	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.656	6	4	1							4	2	3	2	71.702	70.954	2	1.3169E-06	64649	160511_QHF_FH_JSI11i_1	120.68	92.94			1.0476	1.0499	21.674	10	3	Median	1.0586	0.92361	20.181	3	0	Median	1.0644	1.2539	1.2334	2	0	Median	0.85161	0.82682	21.866	3	2	Median	1.0762	1.161	24.134	2	1	Median	1122700000	578910000	543830000	199650000	98438000	101220000	318760000	173400000	145350000	417480000	220490000	196990000	186840000	86576000	100270000	23914	375	22660	149427;149428;149429;149430;149431;149432;149433;149434;149435;149436;149437	202035;202036;202037;202038;202039;202040;202041;202042;202043;202044;202045;202046;202047;202048;202049;202050	202036			16	
IFDSEEILAGYKR	1	Unmodified	1539.7933	0.79330827	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	2	4	3	61.986	61.351	2;3	2.4352E-05	52780	160511_QHF_FH_JSI12i_3	88.552	75.149			0.99327	1.0119	11.168	9	1	Median	1.1888	1.0152	NaN	1	0	Median	0.85908	1.0047	0.087737	2	0	Median	1.1165	1.09	18.872	3	1	Median	0.99327	1.0119	7.2832	3	0	Median	2195700000	1123100000	1072600000	154650000	64274000	90379000	393630000	209720000	183910000	773700000	325580000	448120000	873730000	523520000	350200000	23915	375	22661	149438;149439;149440;149441;149442;149443;149444;149445;149446;149447	202051;202052;202053;202054;202055;202056;202057;202058;202059;202060;202061;202062	202060			11	
IFDSPEELPK	1	Unmodified	1173.5918	0.59175492	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.161	48.48	2	0.0056762	43870	160511_QHF_FH_JSI11i_1	53.683	47.37			0.86108	0.93405	16.607	4	2	Median	1.3419	1.0993	NaN	1	0	Median	0.72674	0.87014	NaN	1	1	Median	1.0202	1.0026	NaN	1	0	Median	0.72375	0.75219	NaN	1	1	Median	578800000	297960000	280840000	123620000	48617000	75007000	128920000	74064000	54858000	174370000	90613000	83758000	151880000	84669000	67216000	23916	1443	22662	149448;149449;149450;149451	202063;202064;202065	202063			3	
IFDYSPLDPTQDFNTQMTK	1	Unmodified	2260.0358	0.035799744	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									1		2	3	88.132	87.714	2;3	5.6401E-05	79859	160511_QHF_FH_JSI11i_1	62.203	53.384			1.0109	0.96096	34.77	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0109	0.96096	NaN	1	0	Median	0.94809	0.93618	49.125	2	2	Median	55658000	33765000	21893000	0	0	0	0	0	0	28295000	18695000	9599800	27363000	15070000	12293000	23917	3920	22663	149452;149453;149454;149455;149456;149457	202066;202067;202068;202069;202070;202071;202072	202066			7	
IFEAYWFLGQAGSSIPSTWPR	0	Unmodified	2412.1903	0.19026697	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.359	87.952	3	1.0367E-16	52238	160513_QHF_FH_JSI10Kac_6	126.04	112.17			1.1643	1.1542	4.1048	4	1	Median	1.2749	1.0668	NaN	1	0	Median	0.96527	1.1645	NaN	1	0	Median	1.235	1.1547	NaN	1	1	Median	1.0977	1.1537	NaN	1	0	Median	905770000	420230000	485540000	198000000	87220000	110780000	286830000	136240000	150590000	190260000	87546000	102720000	230670000	109220000	121450000	23918	3401	22664	149458;149459;149460;149461	202073;202074;202075;202076	202076			4	
IFEFQLMPALVSMLK	1	Unmodified	1765.9511	0.95107124	4376	Q9BRP1	PDCD2L	Programmed cell death protein 2-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.16	103.16	2	3.5643E-05	89914	160511_QHF_FH_JSI12i_3	121.28	105.74			0.84851	0.81943	9.2667	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82859	0.76746	NaN	1	1	Median	0.86891	0.87492	NaN	1	0	Median	107960000	63759000	44201000	0	0	0	0	0	0	21374000	11536000	9838400	86586000	52224000	34362000	23919	4376	22665	149462;149463	202077;202078	202078			2	
IFEGMPVTFTCR	0	Unmodified	1456.6843	0.68429187	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.803	72.169	2	0.00030743	62593	160511_QHF_FH_JSI12i_3	73.721	44.994			1.0467	1.1087	33.323	6	1	Median	0.87169	0.74655	NaN	1	1	Median	0.86099	1.0493	NaN	1	0	Median	0.98133	0.93438	31.966	2	0	Median	1.455	1.5452	13.205	2	0	Median	227620000	112990000	114620000	20676000	9402500	11273000	35579000	18618000	16961000	95114000	50039000	45075000	76247000	34932000	41315000	23920	3805	22666	149464;149465;149466;149467;149468;149469	202079;202080;202081;202082;202083;202084;202085;202086;202087;202088	202086			10	
IFEGTNDILR	0	Unmodified	1176.6139	0.61388734	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.89	6.45	4	2						3		1	2	2	4	56.19	51.994	2	0.0024135	46962	160511_QHF_FH_JSI10i_1	60.019	24.663			0.91091	1.0243	17.638	9	2	Median	0.8818	0.70604	NaN	1	0	Median	0.99538	1.1781	20.326	2	0	Median	1.0792	1.0592	1.5134	2	0	Median	0.87924	0.95718	8.0191	4	2	Median	1467800000	649350000	818430000	39855000	16056000	23799000	128980000	69396000	59585000	125710000	36121000	89588000	1173200000	527780000	645460000	23921	1675	22667	149470;149471;149472;149473;149474;149475;149476;149477;149478	202089;202090;202091;202092;202093	202092			5	
IFEIFGPVAHPFYVLR	0	Unmodified	1904.0349	0.034875949	4112	Q96HR8	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	1	2	95.022	90.105	2;3	9.4273E-08	48191	160513_QHF_FH_JSI10Kac_6	113.59	102.64			0.97353	0.89125	23.944	8	2	Median	1.1132	0.92376	9.9995	2	1	Median	0.70346	0.84354	29.693	3	1	Median	0.73351	0.701	NaN	1	0	Median	1.0694	1.1083	25.894	2	0	Median	1577800000	824140000	753640000	286760000	133850000	152910000	466790000	254310000	212470000	300870000	175410000	125460000	523360000	260560000	262800000	23922	4112	22668	149479;149480;149481;149482;149483;149484;149485;149486	202094;202095;202096;202097;202098;202099;202100;202101;202102;202103	202102			10	
IFEKMDHK	2	Acetyl (K)	1088.5325	0.5324659	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.767	22.484	3	0.029902	12829	160513_QHF_FH_JSI11Kac_6	38.754	26.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23923	5268	22669	149487	202104	202104			1	
IFELGLK	1	Unmodified	818.49019	0.49019038	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.566	58.644	2	0.045437	50339	160511_QHF_FH_JSI12i_2	44.692	5.4738			0.83063	0.9364	8.9041	4	0	Median	1.1376	0.97831	NaN	1	0	Median	0.82359	1.001	NaN	1	0	Median	0.83773	0.82369	NaN	1	0	Median	0.7788	0.89629	NaN	1	0	Median	238430000	134760000	103670000	38682000	18114000	20568000	51058000	28321000	22737000	82415000	45420000	36995000	66273000	42900000	23373000	23924	2338	22670	149488;149489;149490;149491	202105;202106	202105			2	
IFELGLKK	2	Unmodified	946.58515	0.5851534	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	44.398	44.16	3	0.055276	37751	160511_QHF_FH_JSI12i_3	23.429	3.642			1.3909	1.5094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3909	1.5094	NaN	1	1	Median	10996000	4131400	6865000	0	0	0	0	0	0	0	0	0	10996000	4131400	6865000	23925	2338	22671	149492	202107	202107			1	
IFEMGPVFTL	0	Unmodified	1152.5889	0.58891815	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							2	3	4	2	102.47	102.38	2	1.0525E-05	90961	160511_QHF_FH_JSI10i_2	104.45	94.034			0.95182	1.0021	8.7117	10	1	Median	1.2336	1.0334	5.7438	2	0	Median	0.78624	0.96519	10.278	3	0	Median	1.003	0.9839	10.743	3	1	Median	0.96472	1.0443	4.4458	2	0	Median	3431300000	1744500000	1686800000	606280000	251030000	355250000	930830000	525160000	405670000	1152000000	597400000	554610000	742210000	370910000	371300000	23926	767	22672	149493;149494;149495;149496;149497;149498;149499;149500;149501;149502;149503	202108;202109;202110;202111;202112;202113;202114;202115;202116;202117;202118;202119;202120;202121;202122;202123	202123			16	
IFEMGPVFTL	0	Oxidation (M)	1168.5838	0.58383277	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	96.194	96.004	2	0.012125	86950	160511_QHF_FH_JSI10i_1	50.703	42.483			1.5289	1.4824	13.168	4	0	Median	NaN	NaN	NaN	0	0	Median	0.99435	1.177	NaN	1	0	Median	1.5323	1.4824	5.9032	2	0	Median	1.5808	1.5662	NaN	1	0	Median	57664000	27802000	29862000	0	0	0	16097000	8660900	7436000	28479000	13112000	15367000	13088000	6029000	7059300	23927	767	22672	149504;149505;149506;149507	202124	202124		274	1	
IFEPPPPK	1	Unmodified	923.51165	0.5116541	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	31.094	30.175	2	0.033628	25516	160511_QHF_FH_JSI11i_2	46.994	31.362			1.413	1.0765	15.063	4	0	Linear	1.1082	0.96316	NaN	1	0	Median	0.84609	1.0354	NaN	1	0	Median	1.3772	1.3659	NaN	1	0	Median	0.97959	1.1192	NaN	1	0	Median	238200000	112320000	125880000	58093000	22924000	35170000	44266000	24162000	20104000	87649000	41583000	46066000	48187000	23647000	24541000	23928	300	22673	149508;149509;149510;149511	202125;202126	202126			2	
IFEPPPPKK	2	Unmodified	1051.6066	0.60661712	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.73	0.445		3	8							1	1	4	5	22.042	21.765	2;3	0.0028253	17852	160511_QHF_FH_JSI12i_3	46.158	40.123			1.0315	1.0106	27.665	8	3	Median	1.1648	0.99131	NaN	1	0	Median	0.93002	1.1658	NaN	1	0	Median	1.0357	0.97809	14.539	3	1	Plateau	0.98529	1.0117	46.279	3	2	Median	1019900000	485690000	534250000	83258000	40305000	42953000	104590000	61370000	43221000	345170000	146820000	198350000	486910000	237190000	249720000	23929	300	22674	149512;149513;149514;149515;149516;149517;149518;149519;149520;149521;149522	202127;202128;202129;202130;202131;202132;202133;202134;202135;202136;202137;202138	202133			12	
IFEYETQR	0	Unmodified	1084.5189	0.51892433	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	28.019	27.257	2	0.00087206	23485	160511_QHF_FH_JSI9i_2	97.093	81.654			1.0935	1.0595	8.7933	5	0	Median	1.3371	1.157	NaN	1	0	Median	0.8267	1.0283	NaN	1	0	Median	1.146	1.1381	10.117	2	0	Median	0.85864	0.98608	NaN	1	0	Median	1290000000	570650000	719320000	286250000	98959000	187300000	212930000	105360000	107570000	481320000	222040000	259280000	309460000	144290000	165170000	23930	1703	22675	149523;149524;149525;149526;149527	202139;202140;202141;202142;202143	202140			5	
IFFAGDTIPK	1	Unmodified	1107.5964	0.59644637	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	3	1	63.452	62.776	2	0.0013014	55698	160511_QHF_FH_JSI10i_2	66.692	38.269			0.90386	0.9207	10.216	6	1	Median	1.0466	0.88528	NaN	1	0	Median	0.79486	0.95754	NaN	1	0	Median	0.8988	0.84869	12.996	3	1	Median	0.90895	1.0411	NaN	1	0	Median	1432300000	734710000	697640000	241450000	120090000	121360000	232270000	125300000	106970000	657400000	325820000	331570000	301230000	163500000	137730000	23931	512	22676	149528;149529;149530;149531;149532;149533	202144;202145;202146;202147;202148;202149;202150;202151;202152	202152			9	
IFFIDPNERPVTLYHLLK	1	Unmodified	2214.2201	0.22011054	710	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		13.4	5.2			1						4	2	1	2		89.809	83.352	4	0.0003998	45476	160513_QHF_FH_JSI10Kac_6	62.765	53.511			0.84359	0.73816	32.072	5	3	Median	0.72499	0.63499	21.292	2	2	Median	0.90871	1.0618	NaN	1	0	Median	0.72093	0.6999	42.818	2	1	Median	NaN	NaN	NaN	0	0	Median	431950000	236390000	195560000	155070000	88925000	66146000	174660000	103980000	70683000	102220000	43489000	58732000	0	0	0	23932	710	22677	149534;149535;149536;149537;149538	202153;202154;202155;202156;202157	202157			5	
IFFNSLSLHASK	1	Unmodified	1362.7296	0.7295858	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.7	6.13			1						2	2	1			66.503	60.525	3	0.00013221	49805	160511_QHF_FH_JSI9i_3	82.774	66.854			0.33988	0.44429	22.737	3	3	Plateau	0.44426	0.37088	31.853	2	2	Median	0.32998	0.39143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	401730000	276840000	124890000	237530000	159800000	77731000	164200000	117040000	47159000	0	0	0	0	0	0	23933	5541	22678	149539;149540;149541	202158;202159;202160	202158			3	
IFFPGVSEFGK	1	Unmodified	1226.6336	0.63356015	846	P06276	BCHE	Cholinesterase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.503	82.899	2	0.020163	72925	160511_QHF_FH_JSI11i_2	43.635	27.973			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23934	846	22679	149542	202161	202161			1	
IFFSPGGLSTDPLIR	0	Unmodified	1618.8719	0.87189295	5858				yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	88.554	79.54	3	0.053599	44072	160513_QHF_FH_JSI9Kac_6	17.489	5.7973	+		1.1954	0.9927	9.9891	4	0	Linear	1.1988	1.0434	0	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89851	0.84619	NaN	1	0	Median	0.89785	0.94444	NaN	1	0	Median	990530000	451330000	539200000	584560000	248190000	336370000	0	0	0	213490000	93629000	119860000	192480000	109510000	82972000	23935	5858	22680	149543;149544;149545;149546	202162	202162			1	
IFFTNMVTCSQVHFK	1	Unmodified	1857.8906	0.89059625	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			78.347	72.599	3	0.00014406	39582	160513_QHF_FH_JSI10Kac_6	127.57	110.43			1.0602	1.2431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0602	1.2431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68506000	31064000	37442000	0	0	0	68506000	31064000	37442000	0	0	0	0	0	0	23936	4794	22681	149547;149548	202163;202164	202163			2	
IFFVNPAPPYLWPAHK	1	Unmodified	1896.0087	0.0086611984	139	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	3	1	1	1	96.84	95.026	3	6.0861E-06	82219	160511_QHF_FH_JSI10i_3	85.42	75.89			0.87696	0.87135	8.1078	5	4	Median	1.1045	0.9237	13.592	2	2	Median	0.74764	0.87135	NaN	1	0	Median	0.8757	0.83126	NaN	1	1	Median	0.87696	0.88456	NaN	1	1	Median	231010000	129520000	101490000	65009000	28168000	36840000	24762000	14298000	10464000	60910000	35788000	25122000	80330000	51270000	29060000	23937	139	22682	149549;149550;149551;149552;149553;149554	202165;202166;202167;202168;202169;202170;202171;202172;202173	202167			9	
IFGDHPIPQYEVNPR	0	Unmodified	1780.8897	0.88966827	4012	Q96CS2	HAUS1	HAUS augmin-like complex subunit 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.992	51.757	3	8.8222E-06	44323	160511_QHF_FH_JSI12i_3	98.943	87.673			1.0363	1.0344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0363	1.0344	NaN	1	0	Median	76026000	37490000	38536000	0	0	0	0	0	0	0	0	0	76026000	37490000	38536000	23938	4012	22683	149555	202174	202174			1	
IFGESIMIGVKPCIDK	2	Unmodified	1805.942	0.94196312	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.801	75.517	3	0.0034475	65549	160511_QHF_FH_JSI12i_3	46.249	35.614			0.9679	0.98913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9679	0.98913	NaN	1	0	Median	68412000	35061000	33351000	0	0	0	0	0	0	0	0	0	68412000	35061000	33351000	23939	3658	22684	149556	202175	202175			1	
IFGFPTGLGALLVHNR	0	Unmodified	1710.957	0.95695998	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.444	82.134	3	2.194E-75	47465	160513_QHF_FH_JSI10Kac_6	171.26	160.31			0.95846	0.98673	2.137	4	0	Median	1.1774	0.98577	NaN	1	0	Median	0.84575	1.0094	NaN	1	0	Median	1.0056	0.9582	NaN	1	0	Median	0.91349	0.9877	NaN	1	0	Median	801320000	422780000	378540000	195280000	84772000	110510000	418650000	242040000	176610000	129110000	65213000	63892000	58294000	30760000	27534000	23940	4052	22685	149557;149558;149559;149560	202176;202177;202178;202179;202180;202181;202182;202183	202183			8	
IFGGEIK	1	Unmodified	762.42759	0.42759012	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	28.317	27.154	2	0.011077	23506	160511_QHF_FH_JSI9i_2	63.148	21.645			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23941	867	22686	149561;149562	202184;202185	202185			2	
IFGGFLMR	0	Unmodified	939.50004	0.50004356	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	76.518	67.395	2	0.054844	36125	160513_QHF_FH_JSI9Kac_6	43	19.028			1.1149	1.0328	13.11	3	0	Plateau	1.1669	1.0116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0651	1.0328	NaN	1	0	Median	1.1803	1.2818	NaN	1	0	Median	157970000	73892000	84073000	63945000	31892000	32053000	0	0	0	68383000	31533000	36850000	25637000	10467000	15170000	23942	5552	22687	149563;149564;149565	202186	202186			1	
IFGGLDMLAEK	1	Unmodified	1192.6162	0.61619553	3871	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							2	1	4	3	76.977	76.325	2	4.8618E-06	68178	160511_QHF_FH_JSI11i_3	111.06	86.902			0.90705	0.88506	55.1	10	3	Median	1.1395	0.95276	12.388	2	0	Median	0.73774	0.88834	NaN	1	0	Median	0.79392	0.79714	74.223	4	2	Median	0.80055	0.8818	70.527	3	1	Median	8409700000	4525000000	3884700000	1080200000	564600000	515640000	1273800000	640130000	633710000	3976200000	2108100000	1868100000	2079500000	1212200000	867270000	23943	3871	22688	149566;149567;149568;149569;149570;149571;149572;149573;149574;149575	202187;202188;202189;202190;202191;202192;202193;202194;202195;202196;202197;202198;202199;202200;202201;202202;202203;202204;202205;202206	202187			20	
IFGLDIKGR	1	Unmodified	1017.5971	0.59711507	3956	Q969Z3	MARC2	Mitochondrial amidoxime reducing component 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.324	48.72	3	0.011041	39942	160511_QHF_FH_JSI9i_3	41.876	26.214			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23944	3956	22689	149576	202207	202207			1	
IFGLLMGTLQK	1	Unmodified	1219.6999	0.69986558	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	4	4	4	3	86.921	82.835	2	2.0295E-11	41949	160513_QHF_FH_JSI9Kac_6	141.88	114.14			0.40695	0.38719	222.62	15	15	Median	0.74037	0.63295	232.73	4	4	Median	0.71775	0.85793	225.44	4	4	Median	1.5122	1.4441	271.46	4	4	Median	0.25626	0.27075	260.64	3	3	Median	5322700000	2804900000	2517800000	1445200000	720510000	724690000	1619500000	962510000	656980000	1706400000	755620000	950770000	551630000	366270000	185360000	23945	4686	22690	149577;149578;149579;149580;149581;149582;149583;149584;149585;149586;149587;149588;149589;149590;149591	202208;202209;202210;202211;202212;202213;202214;202215;202216;202217;202218;202219;202220;202221;202222;202223;202224;202225;202226;202227;202228;202229	202222			22	
IFGLLMGTLQK	1	Oxidation (M)	1235.6948	0.6947802	4686	Q9H307	PNN	Pinin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	78.307	69.731	2	4.7221E-05	37451	160513_QHF_FH_JSI9Kac_6	97.431	71.047			1.551	1.4486	22.8	4	0	Median	1.8784	1.5766	NaN	1	0	Median	0.91624	1.0923	NaN	1	0	Median	1.384	1.3311	NaN	1	0	Median	1.7382	1.859	NaN	1	0	Median	493170000	199980000	293190000	172210000	49693000	122520000	126090000	61753000	64340000	121460000	52111000	69345000	73409000	36426000	36982000	23946	4686	22690	149592;149593;149594;149595;149596	202230;202231;202232;202233;202234;202235;202236	202233		2514	7	
IFGPIWNR	0	Unmodified	1001.5447	0.54468557	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	64.697	61.426	2	0.0043562	33641	160513_QHF_FH_JSI10Kac_6	82.263	49.792			0.78865	0.80821	11.993	6	0	Median	1.0603	0.88953	11.538	2	0	Median	0.73278	0.8558	10.113	2	0	Median	0.8074	0.75138	NaN	1	0	Median	0.68689	0.70268	NaN	1	0	Median	611500000	323880000	287620000	158160000	73268000	84895000	291660000	161750000	129910000	97840000	50842000	46998000	63838000	38024000	25813000	23947	1000	22691	149597;149598;149599;149600;149601;149602	202237;202238;202239;202240;202241;202242	202242			6	
IFGPIWNRDNIACVILTFK	1	Unmodified	2276.214	0.2139793	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.043	89.322	3	1.9127E-07	51436	160513_QHF_FH_JSI10Kac_6	97.284	78.747			1.002	1.2039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.002	1.2039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	264190000	135830000	128360000	0	0	0	264190000	135830000	128360000	0	0	0	0	0	0	23948	1000	22692	149603	202243;202244	202243			2	
IFGSEAAWK	1	Unmodified	1007.5076	0.50763136	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.946	42.264	2	0.0080406	36966	160511_QHF_FH_JSI9i_2	52.716	26.114			2.3021	2.2053	44.403	6	3	Median	2.4649	2.1179	NaN	1	0	Median	1.8357	2.2101	NaN	1	0	Median	2.3021	2.2417	2.6301	2	1	Median	1.414	1.5167	89.302	2	2	Median	1301400000	535860000	765500000	191680000	42738000	148940000	232770000	67799000	164970000	354810000	118130000	236680000	522100000	307190000	214910000	23949	1675	22693	149604;149605;149606;149607;149608;149609	202245;202246;202247;202248;202249;202250	202247			6	
IFGSNKWTTEQQQR	1	Acetyl (K)	1763.8591	0.85909643	2611	Q15041	ARL6IP1	ADP-ribosylation factor-like protein 6-interacting protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.383	47.657	2	0.0012796	25756	160513_QHF_FH_JSI11Kac_6	90.653	71.908			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6771200	6771200	0	0	0	0	0	0	0	6771200	6771200	0	0	0	0	23950	2611	22694	149610	202251	202251	2578		1	
IFGTDSQYNAYNEK	1	Unmodified	1648.7369	0.73691561	2710	Q15800	MSMO1	Methylsterol monooxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	3	2	2	40.261	39.464	2	2.0588E-07	35531	160511_QHF_FH_JSI11i_1	140.24	129.87			0.9611	1.0002	18.134	10	4	Median	1.2593	1.0272	22.613	3	2	Median	0.7961	0.98291	20.661	3	2	Median	0.96205	0.9769	5.7923	2	0	Median	0.80895	0.86505	26.286	2	0	Median	888340000	468160000	420180000	157400000	72548000	84851000	354120000	200410000	153710000	218030000	106450000	111580000	158790000	88747000	70044000	23951	2710	22695	149611;149612;149613;149614;149615;149616;149617;149618;149619;149620	202252;202253;202254;202255;202256;202257;202258;202259;202260;202261;202262;202263;202264;202265;202266	202253			15	
IFGVTTLDIVR	0	Unmodified	1232.7129	0.71287311	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.54	2	3	4					1	4	3	5	4	2	81.763	78.287	2	7.341E-13	72133	160511_QHF_FH_JSI10i_2	142.92	110.99			0.98589	1.0211	19.495	14	0	Median	1.2201	1.04	31.37	3	0	Plateau	0.90015	1.0808	12.733	5	0	Median	1.0649	1.0186	7.8453	4	0	Median	1.1208	1.1743	26.219	2	0	Median	12414000000	6104100000	6309600000	2679700000	1344100000	1335600000	3611300000	1785300000	1826000000	3650500000	1835400000	1815200000	2472200000	1139400000	1332800000	23952	1504	22696	149621;149622;149623;149624;149625;149626;149627;149628;149629;149630;149631;149632;149633;149634	202267;202268;202269;202270;202271;202272;202273;202274;202275;202276;202277;202278;202279;202280;202281;202282;202283;202284;202285;202286;202287;202288;202289	202280			23	
IFGYPVGIVGNNGVLFSESAK	1	Unmodified	2167.1314	0.13135511	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	100.28	100.26	2;3	1.9298E-14	89266	160511_QHF_FH_JSI11i_3	123.55	107.61			0.95702	0.9458	78.931	6	1	Median	0.29729	0.25857	NaN	1	0	Median	0.16146	0.19668	NaN	1	0	Median	1.1338	1.0683	15.194	2	1	Median	0.95702	0.97645	6.5416	2	0	Median	411520000	238420000	173100000	56706000	39643000	17063000	54845000	43892000	10953000	118450000	56097000	62351000	181520000	98784000	82734000	23953	4852	22697	149635;149636;149637;149638;149639;149640	202290;202291;202292;202293;202294;202295;202296;202297;202298	202292			9	
IFGYPVGIVGNNGVLFSESAKK	2	Unmodified	2295.2263	0.22631813	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				90.787	89.662	3	0.059949	73474	160511_QHF_FH_JSI9i_3	15.506	6.9054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2752600	2752600	0	2752600	2752600	0	0	0	0	0	0	0	0	0	0	23954	4852	22698	149641	202299	202299			1	
IFHAPNASAPSSSLSTFK	1	Unmodified	1860.937	0.9370124	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		53.872	52.979	2;3	7.1921E-09	44338	160511_QHF_FH_JSI10i_3	102.58	99.908			0.96166	1.0582	26.733	7	3	Median	1.3819	1.1184	7.8281	2	0	Median	0.68934	0.79481	44.471	2	1	Median	0.96166	0.91015	22.956	3	2	Median	NaN	NaN	NaN	0	0	Median	1292100000	617540000	674520000	380960000	153410000	227550000	244700000	136040000	108660000	666400000	328090000	338310000	0	0	0	23955	4679	22699	149642;149643;149644;149645;149646;149647;149648	202300;202301;202302;202303;202304;202305;202306;202307;202308;202309;202310	202306			11	
IFHDLDMLTTVQEENEPVIYNR	0	Unmodified	2675.2901	0.29011695	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	86.476	86.4	3	6.3948E-06	77075	160511_QHF_FH_JSI11i_3	63.578	60.304			1.3751	1.3278	9.1573	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5636	1.4166	NaN	1	0	Median	1.2093	1.2445	NaN	1	1	Median	71916000	30179000	41738000	0	0	0	0	0	0	34770000	14540000	20230000	37146000	15639000	21508000	23956	2118	22700	149649;149650	202311;202312;202313	202311			3	
IFHELTQTDK	1	Unmodified	1230.6245	0.62445203	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.81		13	9						1	5	3	7	8	24.085	23.148	2;3	2.026E-06	19291	160511_QHF_FH_JSI11i_3	140.49	123.54			0.64387	0.60809	86.248	23	21	Median	1.0613	0.85826	94.987	5	4	Median	0.35361	0.43545	112.21	3	3	Median	0.64387	0.60809	89.439	7	7	Median	0.69168	0.76938	85.929	8	7	Median	6918200000	3343500000	3574700000	609070000	238770000	370300000	805160000	490600000	314560000	2841700000	1360800000	1480900000	2662300000	1253300000	1409000000	23957	1004	22701	149651;149652;149653;149654;149655;149656;149657;149658;149659;149660;149661;149662;149663;149664;149665;149666;149667;149668;149669;149670;149671;149672;149673	202314;202315;202316;202317;202318;202319;202320;202321;202322;202323;202324;202325;202326;202327;202328;202329;202330;202331;202332;202333;202334;202335;202336;202337;202338;202339;202340	202314			27	
IFHIVENDLYIDFGGK	1	Unmodified	1878.9516	0.95159983	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.082	88.027	3	2.2839E-05	76292	160511_QHF_FH_JSI12i_3	84.874	78.842			1.0423	1.0071	4.4467	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0484	0.97594	NaN	1	0	Median	1.0363	1.0393	NaN	1	0	Median	76223000	33203000	43020000	0	0	0	0	0	0	21596000	9125300	12471000	54627000	24078000	30549000	23958	5528	22702	149674;149675	202341;202342;202343	202342			3	
IFHLEVCSR	0	Unmodified	1159.5808	0.58081308	3883;580	Q92783;O75886	STAM;STAM2	Signal transducing adapter molecule 1;Signal transducing adapter molecule 2	no	no	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	49.836	40.12	3	0.0027235	20916	160513_QHF_FH_JSI12Kac_6	51.528	47.605			0.98747	0.99406	13.811	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93177	0.90156	NaN	1	0	Median	1.0465	1.096	NaN	1	0	Median	15729000	9825300	5904100	0	0	0	0	0	0	8692800	6221500	2471300	7036700	3603800	3432900	23959	3883;580	22703	149676;149677	202344;202345	202345			2	
IFHTVTTTDDPVIR	0	Unmodified	1613.8413	0.8413211	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.78	0.416		2	7							2	1	3	3	45.405	44.887	2;3	3.5074E-06	39626	160511_QHF_FH_JSI11i_3	124.67	94.105			1.1166	1.15	26.851	8	4	Median	1.6999	1.4813	7.4101	2	2	Median	1.2039	1.3634	NaN	1	0	Median	0.9606	0.90465	15.33	3	2	Median	1.1338	1.15	10.849	2	0	Median	953720000	474650000	479060000	111810000	39655000	72152000	40865000	19498000	21367000	373600000	202090000	171510000	427450000	213410000	214040000	23960	282	22704	149678;149679;149680;149681;149682;149683;149684;149685;149686	202346;202347;202348;202349;202350;202351;202352;202353;202354;202355	202349			9	
IFHTVTTTDDPVIRK	1	Unmodified	1741.9363	0.93628412	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			38.821	37.338	3;4	0.00019761	31139	160511_QHF_FH_JSI10i_3	66.246	55.612			0.94854	0.88888	43.977	4	1	Median	1.6004	1.2987	5.9937	2	1	Median	0.53032	0.60911	5.8293	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	310570000	155650000	154910000	202310000	83266000	119040000	108260000	72387000	35869000	0	0	0	0	0	0	23961	282	22705	149687;149688;149689;149690	202356;202357;202358;202359;202360;202361	202356			6	
IFHVNWFR	0	Unmodified	1117.5821	0.58213371	2768	Q16822;P35558	PCK2;PCK1	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial;Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	yes	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			69.736	61.586	3	3.2304E-11	32702	160513_QHF_FH_JSI9Kac_6	130.77	112.02			1.1514	1.1608	15.687	2	0	Median	1.5262	1.297	NaN	1	0	Median	0.86859	1.0389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	646070000	405860000	240210000	94584000	41670000	52914000	551480000	364190000	187290000	0	0	0	0	0	0	23962	2768	22706	149691;149692	202362;202363;202364;202365	202362			4	
IFIGTFK	1	Unmodified	824.47963	0.47962569	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.45		4	4					3	3	3	4	3	4	60.828	56.082	2	0.011468	45991	160511_QHF_FH_JSI9i_3	70.912	37.174			0.90058	0.9123	21.084	14	2	Median	1.2514	1.0475	31.99	3	1	Plateau	0.69832	1.0516	14.226	4	1	Linear	0.97553	0.94995	11.978	3	0	Median	0.82482	0.90317	26.895	4	0	Median	15079000000	7520000000	7559300000	3726100000	2003900000	1722200000	3232700000	1830900000	1401800000	3199100000	1418700000	1780400000	4921300000	2266400000	2654900000	23963	1059	22707	149693;149694;149695;149696;149697;149698;149699;149700;149701;149702;149703;149704;149705;149706	202366;202367;202368;202369;202370;202371;202372;202373;202374;202375;202376;202377;202378;202379;202380;202381;202382;202383;202384;202385	202374			20	
IFIGTFKAFDK	2	Acetyl (K)	1327.7176	0.71762413	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	1	0	0	1			By MS/MS		16	0									1			1		84.983	75.666	2	0.0012434	41887	160513_QHF_FH_JSI11Kac_6	83.438	64.459			0.36207	0.33308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36207	0.33308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59865000	44569000	15296000	0	0	0	0	0	0	59865000	44569000	15296000	0	0	0	23964	1059	22708	149707	202386	202386	895		1	
IFIKPNAQK	2	Unmodified	1057.6284	0.6284152	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.192	21.96	3	0.028183	18047	160511_QHF_FH_JSI10i_3	37.191	10.518			0.5335	0.61509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5335	0.61509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58857000	38057000	20800000	0	0	0	58857000	38057000	20800000	0	0	0	0	0	0	23965	2175	22709	149708	202387	202387			1	
IFILGPSHHVPLSR	0	Unmodified	1571.8936	0.89363144	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	16	0									3	1		1	1	63.9	54.372	4	6.7195E-05	28804	160513_QHF_FH_JSI9Kac_6	77.204	64.004			1.0654	1.0573	19.421	3	0	Median	1.2507	1.0573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81321	0.7989	NaN	1	0	Median	1.0654	1.1601	NaN	1	0	Median	71716000	31450000	40266000	31363000	10508000	20855000	0	0	0	24127000	11933000	12195000	16226000	9008400	7217100	23966	5556	22710	149709;149710;149711	202388;202389	202389			2	
IFINLPR	0	Unmodified	871.52797	0.52797287	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	63.245	62.418	2	0.00251	51215	160511_QHF_FH_JSI9i_3	110.54	50.895			0.9977	0.90514	7.436	5	0	Linear	1.1713	0.92896	NaN	1	0	Median	0.74665	0.8935	14.281	2	0	Median	0.94452	0.90514	NaN	1	0	Median	0.86079	0.87853	NaN	1	0	Median	1752600000	934780000	817850000	450410000	198580000	251840000	445570000	257710000	187860000	436760000	224910000	211850000	419890000	253580000	166310000	23967	328	22711	149712;149713;149714;149715;149716	202390;202391;202392;202393;202394;202395;202396;202397;202398	202394			9	
IFISNTFNPAK	1	Unmodified	1250.6659	0.66592292	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	60.416	59.587	2	2.7738E-09	51301	160511_QHF_FH_JSI12i_3	149.72	105.91			0.95947	0.93064	0.6689	4	0	Median	1.1574	0.92461	NaN	1	0	Median	0.82014	0.93948	NaN	1	0	Median	1.0137	0.93207	NaN	1	0	Median	0.9081	0.92921	NaN	1	0	Median	624130000	330450000	293670000	95239000	42628000	52610000	111640000	74787000	36855000	153910000	76439000	77466000	263340000	136600000	126740000	23968	4093	22712	149717;149718;149719;149720;149721	202399;202400;202401;202402;202403;202404;202405;202406;202407	202407			9	
IFKPEELR	1	Unmodified	1030.5811	0.58113065	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	29.656	29.629	3	0.051943	25481	160511_QHF_FH_JSI11i_3	25.808	11.601			0.99255	0.96388	0.54769	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.03	0.96762	NaN	1	0	Median	0.95643	0.96015	NaN	1	0	Median	214650000	102760000	111890000	0	0	0	0	0	0	120920000	57146000	63771000	93737000	45618000	48120000	23969	2285;3886	22713	149722;149723	202408;202409	202408			2	
IFLCQGK	1	Unmodified	864.45276	0.45275902	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	27.898	27.876	2	0.02555	24003	160511_QHF_FH_JSI11i_3	54.525	20.787			1.6458	1.608	7.3976	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6144	1.5261	NaN	1	0	Median	1.6779	1.6944	NaN	1	0	Median	308310000	117270000	191030000	0	0	0	0	0	0	131950000	60732000	71222000	176350000	56542000	119810000	23970	1554	22714	149724;149725	202410	202410			1	
IFLDESAPDNVLEVTAR	0	Unmodified	1887.9578	0.95780742	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	84.992	84.852	2	5.837E-06	77040	160511_QHF_FH_JSI10i_1	111.39	86.533			0.8758	0.9845	18.928	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8758	0.9845	18.928	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26167000	15318000	10849000	0	0	0	26167000	15318000	10849000	0	0	0	0	0	0	23971	5409	22715	149726;149727;149728	202411;202412;202413;202414	202414			4	
IFLDHIGGTR	0	Unmodified	1127.6087	0.60874239	2012	P62699	YPEL5	Protein yippee-like 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	41.798	41.217	3	0.00043608	35064	160511_QHF_FH_JSI12i_3	63.408	54.827			1.0453	0.90929	25.183	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0453	1.2012	NaN	1	1	Median	1.1729	1.1038	NaN	1	0	Median	0.74811	0.74904	NaN	1	0	Median	240440000	132720000	107720000	0	0	0	50347000	24180000	26167000	85021000	44974000	40048000	105080000	63569000	41506000	23972	2012	22716	149729;149730;149731;149732	202415;202416;202417;202418;202419;202420	202419			6	
IFLDPEKR	1	Unmodified	1016.5655	0.56548059	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		32.327	31.388	3	0.0051277	26298	160511_QHF_FH_JSI10i_3	45.161	33.939			1.0315	1.3706	32.556	3	0	Plateau	1.706	1.3706	NaN	1	0	Median	0.68907	0.79937	NaN	1	0	Median	1.5441	1.4358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277890000	127130000	150760000	48172000	15765000	32407000	118410000	73101000	45308000	111310000	38264000	73049000	0	0	0	23973	2194	22717	149733;149734;149735	202421;202422	202421			2	
IFLDPLLDVLMK	1	Unmodified	1415.8098	0.80980996	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	102.93	102.82	2	0.00030045	90630	160511_QHF_FH_JSI11i_2	78.655	60.344			1.2569	1.083	23.956	3	2	Median	1.2569	1.083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5518	1.5799	NaN	1	1	Median	0.94562	1.0133	NaN	1	0	Median	60620000	27615000	33005000	11269000	3772100	7496600	0	0	0	23370000	10469000	12901000	25981000	13373000	12608000	23974	2397	22718	149736;149737;149738	202423;202424;202425;202426	202426			4	
IFLEFERVESAIK	1	Unmodified	1579.861	0.86099391	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	80.354	80.274	3	0.030077	69636	160511_QHF_FH_JSI12i_3	33.204	21.59			1.2169	1.2209	19.951	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4113	1.2896	27.859	2	2	Median	1.2169	1.2209	NaN	1	0	Median	261640000	113520000	148120000	0	0	0	0	0	0	183100000	75538000	107560000	78543000	37984000	40559000	23975	4119	22719	149739;149740;149741	202427;202428;202429	202429			3	
IFLEFHQFFLDR	0	Unmodified	1610.8245	0.82454882	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				88.056	79.419	3	0.00033641	44033	160513_QHF_FH_JSI9Kac_6	76.357	55.128			0.39367	0.33367	NaN	1	1	Median	0.39367	0.33367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32694000	19942000	12752000	32694000	19942000	12752000	0	0	0	0	0	0	0	0	0	23976	5164	22720	149742	202430	202430			1	
IFLENHVR	0	Unmodified	1026.5611	0.56106391	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	2	2	1	26.72	25.903	2;3	0.00029684	21346	160511_QHF_FH_JSI12i_3	83.265	64.17			0.99134	1.1104	14.486	7	0	Median	1.5451	1.2481	15.701	2	0	Median	0.94326	1.095	5.4529	2	0	Median	0.93536	0.93097	10.735	2	0	Median	1.0861	1.1104	NaN	1	0	Median	992640000	539160000	453490000	202490000	82956000	119530000	252500000	144960000	107540000	279000000	150230000	128770000	258650000	161010000	97640000	23977	2454	22721	149743;149744;149745;149746;149747;149748;149749	202431;202432;202433;202434;202435;202436;202437;202438;202439;202440	202440			10	
IFLETRK	1	Unmodified	905.53345	0.53345218	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		21.945	21.111	3	0.02237	17454	160511_QHF_FH_JSI10i_3	32.841	17.179			0.84826	1.0178	21.356	3	0	Median	0.84826	0.70421	NaN	1	0	Median	0.84297	1.021	NaN	1	0	Median	1.0649	1.0178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	266780000	140130000	126650000	100040000	48026000	52012000	85537000	56525000	29012000	81206000	35580000	45626000	0	0	0	23978	4234	22722	149750;149751;149752	202441;202442	202442			2	
IFLFDTQHFISK	1	Unmodified	1494.7871	0.78710068	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	82.293	82.154	2;3	2.9396E-08	71382	160511_QHF_FH_JSI12i_3	113.99	101.6			1.2017	1.2281	18.583	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1654	1.0907	NaN	1	0	Median	1.3492	1.3886	17.375	2	1	Median	291640000	151770000	139870000	0	0	0	0	0	0	79312000	35213000	44099000	212330000	116560000	95771000	23979	4733	22723	149753;149754;149755	202443;202444;202445;202446;202447	202445			4	
IFLIASK	1	Unmodified	790.49528	0.49527576	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.299	50.452	2	0.034446	44376	160511_QHF_FH_JSI11i_3	50.127	26.154			1.2062	1.0804	8.6005	4	0	Median	1.242	1.01	NaN	1	0	Median	0.86265	1.0067	NaN	1	0	Median	1.2604	1.1559	NaN	1	0	Median	1.1714	1.1828	NaN	1	0	Median	236020000	118230000	117790000	43244000	20395000	22849000	43260000	24131000	19129000	69660000	35365000	34295000	79853000	38338000	41515000	23980	3840	22724	149756;149757;149758;149759	202448;202449	202448			2	
IFLLTNNNLLLADQK	1	Unmodified	1728.9774	0.97742065	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	95.437	95.205	2;3	6.6845E-05	82286	160511_QHF_FH_JSI12i_3	76.759	65.489			1.2371	1.1946	23.877	9	2	Median	1.9367	1.6701	NaN	1	1	Median	1.1247	1.3649	46.836	2	1	Median	1.2525	1.1946	17.524	3	0	Median	1.1576	1.1651	9.997	3	0	Median	124380000	62264000	62120000	6647000	1932600	4714400	13228000	4996500	8231300	38328000	20905000	17422000	66181000	34429000	31752000	23981	376	22725	149760;149761;149762;149763;149764;149765;149766;149767;149768	202450;202451;202452;202453;202454;202455;202456;202457;202458;202459;202460;202461;202462;202463;202464	202460			15	
IFLQVTSR	0	Unmodified	962.55492	0.5549159	2713	Q15814	TBCC	Tubulin-specific chaperone C	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				47.27	45.661	2	0.061119	37481	160511_QHF_FH_JSI9i_3	43.808	25.077			1.0964	0.89167	NaN	1	1	Median	1.0964	0.89167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77351000	33910000	43441000	77351000	33910000	43441000	0	0	0	0	0	0	0	0	0	23982	2713	22726	149769	202465	202465			1	
IFLSHEELEPDSIER	0	Unmodified	1812.8894	0.8893935	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.406	59.138	3	0.046528	50787	160511_QHF_FH_JSI12i_3	37.77	32.965			1.6581	1.6712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6581	1.6712	NaN	1	0	Median	107160000	34558000	72597000	0	0	0	0	0	0	0	0	0	107160000	34558000	72597000	23983	1403	22727	149770	202466	202466			0	
IFLYPNAGQLK	1	Unmodified	1262.7023	0.70230842	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	66.256	65.43	2	0.00012834	58260	160511_QHF_FH_JSI11i_3	84.476	56.077			0.66979	0.74382	21.058	9	5	Median	0.77692	0.65225	38.203	2	1	Median	0.53737	0.62566	8.6898	2	1	Median	0.82704	0.7894	28.163	3	2	Median	0.70097	0.75566	2.2343	2	1	Median	462610000	268590000	194010000	58873000	31240000	27633000	82329000	53977000	28352000	183850000	108190000	75666000	137550000	75189000	62360000	23984	4314	22728	149771;149772;149773;149774;149775;149776;149777;149778;149779	202467;202468;202469;202470;202471;202472;202473;202474;202475;202476;202477	202467			11	
IFMDAILLSLTR	0	Unmodified	1391.7847	0.78465784	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	96.597	88.188	2	1.5641E-08	49732	160513_QHF_FH_JSI11Kac_6	116.77	97.986			0.97262	0.76489	23.1	4	1	Linear	0.76893	0.6605	NaN	1	0	Median	0.49104	0.57223	NaN	1	1	Median	0.9388	0.88578	NaN	1	0	Median	0.88243	0.92325	NaN	1	0	Median	464290000	240240000	224050000	105680000	49462000	56219000	80730000	52727000	28003000	153940000	81982000	71960000	123940000	56066000	67869000	23985	3147	22729	149780;149781;149782;149783	202478;202479;202480;202481	202478			4	
IFMDAILLSLTRK	1	Unmodified	1519.8796	0.87962086	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		91.669	83.712	3	0.0024334	48515	160513_QHF_FH_JSI10Kac_6	60.937	48.791			0.7156	0.71701	68.069	3	1	Plateau	1.341	1.1631	NaN	1	0	Median	0.38187	0.44202	NaN	1	1	Median	1.7054	1.6434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129260000	75370000	53887000	37788000	23452000	14336000	60828000	39486000	21342000	30640000	12432000	18208000	0	0	0	23986	3147	22730	149784;149785;149786	202482;202483	202483			2	
IFNDNSLSMEAFQHR	0	Unmodified	1807.8312	0.83116712	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	60.966	60.518	2;3	2.075E-10	53813	160511_QHF_FH_JSI11i_3	147.1	140.26			1.0476	0.98272	14.297	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.97062	1.181	NaN	1	0	Median	1.2351	1.1641	11.276	2	1	Median	0.88876	0.90713	NaN	1	0	Median	550540000	249370000	301170000	0	0	0	82144000	34558000	47585000	219850000	97333000	122510000	248550000	117480000	131070000	23987	1529	22731	149787;149788;149789;149790	202484;202485;202486;202487;202488;202489	202485			6	
IFNLSGGEK	1	Unmodified	963.50255	0.50254598	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	34.389	33.812	2	0.0020756	28584	160511_QHF_FH_JSI12i_3	66.27	10.26			0.9284	0.85916	43.246	2	1	Median	0.7425	0.6328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1608	1.1665	NaN	1	0	Median	294200000	168510000	125680000	172930000	114620000	58316000	0	0	0	0	0	0	121260000	53900000	67364000	23988	4989	22732	149791;149792	202490;202491	202491			2	
IFNNQEFAALLAQSVNQGFEAVYQLTR	0	Unmodified	3070.5512	0.55123409	2709;2124	Q15796;P84022	SMAD2;SMAD3	Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.26	94.803	3;4	1.1017E-33	57054	160513_QHF_FH_JSI10Kac_6	137.26	124.17			0.98126	1.1613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98126	1.1613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174550000	88294000	86254000	8241000	0	8241000	166310000	88294000	78013000	0	0	0	0	0	0	23989	2709;2124	22733	149793;149794	202492;202493	202493			2	
IFNPHLNK	1	Unmodified	981.5396	0.53960019	2495	Q14135	VGLL4	Transcription cofactor vestigial-like protein 4	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	3	0			3							1		1	1	23.392	22.946	3	0.0050078	18913	160511_QHF_FH_JSI12i_3	45.081	26.351			0.98794	0.82174	12.658	3	0	Median	0.98794	0.79918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0805	1.0077	NaN	1	0	Median	0.8181	0.82174	NaN	1	0	Median	176320000	79079000	97238000	43787000	17083000	26704000	0	0	0	45117000	18456000	26661000	87413000	43540000	43873000	23990	2495	22734	149795;149796;149797	202494	202494			1	
IFNSDELIHFR	0	Unmodified	1389.7041	0.70409934	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	65.949	65.575	3	0.0018469	56618	160511_QHF_FH_JSI12i_3	50.484	36.754			1.1258	1.2938	13.095	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81578	1.0122	NaN	1	1	Median	1.2636	1.1785	NaN	1	0	Median	1.1258	1.3137	NaN	1	0	Median	136880000	66668000	70213000	0	0	0	19299000	13804000	5495200	45119000	18135000	26984000	72463000	34730000	37734000	23991	4997	22735	149798;149799;149800;149801;149802	202495;202496;202497;202498;202499;202500	202500			5	
IFNSFLHTALK	1	Unmodified	1289.7132	0.71320746	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	3	2	1	1	63.092	60.848	2;3	7.5271E-07	51221	160511_QHF_FH_JSI10i_3	111.94	99.723			1.0442	0.84101	12.309	6	1	Linear	1.2216	0.83945	12.892	3	1	Plateau	0.90806	1.0329	NaN	1	0	Median	1.0624	1.0171	NaN	1	0	Median	0.78133	0.79869	NaN	1	0	Median	851120000	441720000	409400000	241060000	109290000	131770000	147670000	80686000	66979000	167460000	93504000	73953000	294940000	158240000	136700000	23992	2884	22736	149803;149804;149805;149806;149807;149808;149809	202501;202502;202503;202504;202505;202506;202507;202508;202509	202503			8	
IFNTNNLWISLAAVK	1	Unmodified	1702.9406	0.94064121	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.76	6.62		2	6						9	5	4	4	4	97.346	92.845	2;3	6.6632E-120	46513	160513_QHF_FH_JSI9Kac_6	260.81	218.93			0.92881	0.94197	22.682	17	0	Median	1.178	0.98544	21.728	5	0	Median	0.83919	0.97879	25.121	4	0	Median	1.0017	0.95561	31.125	4	0	Median	0.84671	0.86465	12.308	4	0	Median	5540600000	2942500000	2598100000	864090000	430550000	433540000	1504100000	805400000	698680000	1212100000	544040000	668100000	1960300000	1162500000	797830000	23993	2772	22737	149810;149811;149812;149813;149814;149815;149816;149817;149818;149819;149820;149821;149822;149823;149824;149825;149826	202510;202511;202512;202513;202514;202515;202516;202517;202518;202519;202520;202521;202522;202523;202524;202525;202526;202527;202528;202529;202530;202531;202532;202533;202534;202535;202536;202537	202523			25	
IFPGDTILETGEVIPPMK	1	Unmodified	1956.0278	0.02780124	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								1	2	4	4	100.78	100.67	2;3	3.9696E-12	91247	160511_QHF_FH_JSI12i_1	148.03	132.39			0.88891	0.92303	23.908	11	1	Median	1.0162	0.9026	NaN	1	1	Median	0.78251	0.92534	0.35258	2	0	Median	0.9388	0.91961	24.05	4	0	Median	1.0039	1.0592	35.36	4	0	Median	1327100000	700250000	626890000	36591000	15870000	20721000	233530000	134960000	98571000	629810000	321720000	308090000	427210000	227700000	199510000	23994	645	22738	149827;149828;149829;149830;149831;149832;149833;149834;149835;149836;149837	202538;202539;202540;202541;202542;202543;202544;202545;202546;202547;202548;202549;202550;202551;202552;202553	202543			15	
IFPGLAADQSR	0	Unmodified	1173.6142	0.6142217	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.075	46.834	2	0.0003491	40088	160511_QHF_FH_JSI12i_3	74.162	28.444			1.1594	1.1778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1594	1.1778	NaN	1	0	Median	138250000	52862000	85385000	0	0	0	0	0	0	0	0	0	138250000	52862000	85385000	23995	2407	22739	149838;149839	202554;202555;202556;202557	202557			4	
IFPGLSPVR	0	Unmodified	984.57565	0.57565135	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	58.414	57.583	2	1.8708E-05	49457	160511_QHF_FH_JSI12i_3	121.99	95.88			1.0694	1.0303	13.437	4	0	Linear	1.1566	0.91303	NaN	1	0	Median	0.70742	0.80384	NaN	1	0	Median	1.131	1.0916	NaN	1	0	Median	1.0111	1.0223	NaN	1	0	Median	638000000	318950000	319050000	166330000	77205000	89121000	128710000	72970000	55739000	171940000	77402000	94538000	171020000	91369000	79655000	23996	3003	22740	149840;149841;149842;149843	202558;202559;202560;202561;202562;202563;202564;202565	202565			8	
IFPMGDR	0	Unmodified	834.40581	0.40580882	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	2	3	2	35.059	34.44	2	0.0041464	29378	160511_QHF_FH_JSI12i_3	99.919	82.993			1.1875	1.1599	18.438	8	0	Median	1.2368	1.0516	NaN	1	0	Median	1.1076	1.292	14.13	2	0	Median	1.2257	1.1803	17.544	3	0	Median	0.91317	0.96274	25.218	2	0	Median	2548000000	1215600000	1332400000	250120000	117120000	132990000	258290000	126550000	131730000	993430000	479990000	513440000	1046100000	491940000	554200000	23997	1672	22741	149844;149845;149846;149847;149848;149849;149850;149851	202566;202567;202568;202569;202570;202571;202572	202571			7	
IFPPETSASVAATPPPSTASAPAAVNSSASADK	1	Unmodified	3096.5251	0.5251385	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	65.798	65.145	3;4	1.0449E-15	59388	160511_QHF_FH_JSI11i_1	72.37	67.317			1.2978	1.1605	64.462	6	5	Median	1.1165	0.92654	55.513	2	2	Median	1.8619	2.2264	NaN	1	1	Median	0.66319	0.64361	59.703	2	1	Median	1.807	1.8805	NaN	1	1	Median	594160000	338990000	255170000	242250000	149690000	92566000	77388000	28579000	48809000	184600000	121550000	63051000	89922000	39182000	50740000	23998	939	22742	149852;149853;149854;149855;149856;149857	202573;202574;202575;202576;202577;202578;202579	202574			7	
IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK	2	Unmodified	3766.8724	0.87236982	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.875	4	2	3							2	2	3	2	70.494	70.034	4;5	1.9614E-18	62782	160511_QHF_FH_JSI11i_3	77.766	75.688			0.91832	1.0143	17.515	9	1	Median	1.3685	1.1786	18.342	2	0	Median	0.90917	1.1016	11.682	2	0	Median	0.89659	0.82165	4.4054	3	0	Plateau	1.0299	1.0544	22.037	2	1	Median	560880000	305210000	255670000	80114000	36602000	43512000	107020000	62568000	44456000	264100000	149700000	114400000	109640000	56347000	53296000	23999	939	22743	149858;149859;149860;149861;149862;149863;149864;149865;149866	202580;202581;202582;202583;202584;202585;202586;202587;202588;202589;202590;202591;202592;202593;202594;202595;202596;202597;202598;202599;202600	202583			21	
IFPVPEEPPVK	1	Unmodified	1250.6911	0.69107503	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1.33	0.471	2	1								1		1	1	63.14	62.395	2	0.011394	55274	160511_QHF_FH_JSI9i_1	46.158	29.955			0.82255	0.7766	12.332	3	0	Median	0.96611	0.7766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68596	0.6761	NaN	1	0	Median	0.82255	0.86465	NaN	1	0	Median	127370000	63858000	63509000	39476000	19466000	20010000	0	0	0	42274000	18811000	23463000	45616000	25581000	20035000	24000	752	22744	149867;149868;149869	202601;202602;202603	202602			3	
IFQAHKNCGQMSEIEAK	2	Acetyl (K)	2031.9506	0.95063033	5616	Q9Y490	TLN1	Talin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		49.519	39.817	3	0.0083435	21575	160513_QHF_FH_JSI11Kac_6	51.888	41.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4092400	4092400	0	0	0	0	0	0	0	4092400	4092400	0	0	0	0	24001	5616	22745	149870	202604	202604	3500		1	
IFQAHSLHYLANLPK	1	Unmodified	1750.9519	0.9518746	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			65.767	57.265	4	0.0087526	31459	160513_QHF_FH_JSI10Kac_6	34.954	28.226			0.60764	0.60356	70.172	2	0	Median	1.1572	0.99133	NaN	1	0	Median	0.31905	0.36748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35010000	19698000	15312000	20115000	8434800	11680000	14895000	11263000	3631800	0	0	0	0	0	0	24002	325	22746	149871;149872	202605;202606	202606			2	
IFQEALVQITLPTVQK	1	Unmodified	1827.0506	0.050585593	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	96.674	96.271	3	0.0015684	82823	160511_QHF_FH_JSI12i_2	52.522	36.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24003	4572	22747	149873;149874	202607;202608	202608			2	
IFQFQNFTNTR	0	Unmodified	1414.6993	0.69934831	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			71.911	64.445	2	0.00058357	35384	160513_QHF_FH_JSI10Kac_6	89.047	51.856			0.72923	0.86926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72923	0.86926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8442700	6817000	1625700	0	0	0	8442700	6817000	1625700	0	0	0	0	0	0	24004	2795	22748	149875	202609	202609			1	
IFQGNVHNFEK	1	Unmodified	1331.6622	0.66223452	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							4	3	2	2	30.346	29.521	2;3	9.5164E-08	24055	160511_QHF_FH_JSI9i_3	100.93	85.544			1.0476	1.0334	43.894	11	6	Median	1.1339	0.96825	37.371	4	3	Median	0.43565	0.52954	76.484	3	3	Median	1.3724	1.2916	9.7609	2	0	Median	1.0037	1.0134	5.8979	2	0	Median	3256500000	1507800000	1748700000	432740000	171710000	261030000	944900000	470110000	474790000	950930000	357570000	593370000	927940000	508400000	419540000	24005	4029	22749	149876;149877;149878;149879;149880;149881;149882;149883;149884;149885;149886	202610;202611;202612;202613;202614;202615;202616;202617;202618;202619;202620;202621;202622;202623;202624;202625	202618			16	
IFQGSFGGPTLYENPHYQSPNMHR	0	Unmodified	2776.2816	0.28161795	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			61.958	60.441	4	1.3108E-08	50616	160511_QHF_FH_JSI10i_3	86.987	84.021			1.0242	1.2142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0242	1.2142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55926000	32012000	23914000	0	0	0	55926000	32012000	23914000	0	0	0	0	0	0	24006	3723	22750	149887	202626	202626			1	
IFQIHTSR	0	Unmodified	1000.5454	0.54541385	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	30.699	22.271	2;3	0.0052493	12330	160513_QHF_FH_JSI9Kac_6	42.312	23.64			0.68138	0.7689	9.9255	4	0	Median	1.0544	0.91958	NaN	1	0	Median	0.65175	0.76425	4.351	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69321	0.75014	NaN	1	0	Median	47005000	26058000	20946000	13224000	6685200	6538300	28047000	15678000	12369000	0	0	0	5734700	3695600	2039100	24007	1983	22751	149888;149889;149890;149891	202627;202628	202627			2	
IFQILYANEGESK	1	Unmodified	1510.7668	0.76675917	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	6			2					2			1	2	1	67.729	64.126	2	5.7618E-06	57083	160511_QHF_FH_JSI11i_3	126.67	99.556			0.95223	0.98742	25.381	3	2	Median	NaN	NaN	NaN	0	0	Median	0.69448	0.82333	NaN	1	0	Median	1.4432	1.3593	NaN	1	1	Median	0.95223	0.98742	NaN	1	1	Median	81280000	31482000	49799000	0	0	0	4689900	2490400	2199500	35832000	13690000	22142000	40759000	15301000	25458000	24008	475	22752	149892;149893;149894;149895	202629;202630;202631;202632;202633	202629			5	
IFQIQFPLYTAYK	1	Unmodified	1630.8759	0.87591569	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.464	82.104	2	4.8533E-07	46092	160513_QHF_FH_JSI11Kac_6	140.3	105.41			0.5808	0.56887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5808	0.56887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39672000	20691000	18980000	0	0	0	0	0	0	39672000	20691000	18980000	0	0	0	24009	3198	22753	149896	202634	202634			1	
IFQKGESPVDYDGGR	1	Acetyl (K)	1708.8057	0.80566387	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		59.404	48.522	2	0.010048	26517	160513_QHF_FH_JSI11Kac_5	56.225	41.535			0.26796	0.25565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26796	0.25565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6803700	5249800	1553900	0	0	0	0	0	0	6803700	5249800	1553900	0	0	0	24010	2628	22754	149897	202635	202635	2594		1	
IFQNAPTDPTQDFSTQVAK	1	Unmodified	2107.0222	0.02219859	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	62.162	61.479	2;3	1.5089E-24	55564	160511_QHF_FH_JSI10i_1	176.87	155.81			1.1178	1.0574	13.689	10	5	Median	1.3906	0.91914	13.655	3	2	Plateau	0.86574	1.0083	10.149	2	0	Median	1.179	1.1476	5.6312	2	1	Median	1.3451	1.3985	18.63	3	2	Plateau	3791900000	1615600000	2176200000	1268500000	557060000	711460000	595060000	302860000	292200000	774540000	330030000	444500000	1153800000	425690000	728060000	24011	1573	22755	149898;149899;149900;149901;149902;149903;149904;149905;149906;149907;149908	202636;202637;202638;202639;202640;202641;202642;202643;202644;202645;202646;202647;202648;202649;202650;202651	202645			16	
IFQNLDGALDEVVLK	1	Unmodified	1672.9036	0.903587	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.655	87.21	2	0.00023644	79401	160511_QHF_FH_JSI12i_1	84.507	69.631			0.62211	0.74478	6.5	4	0	Linear	1.054	0.87917	NaN	1	0	Median	0.6416	0.76201	NaN	1	0	Median	0.8148	0.7817	NaN	1	0	Median	0.81796	0.8366	NaN	1	0	Median	124410000	69239000	55168000	23692000	12774000	10918000	43276000	23110000	20165000	31171000	17775000	13395000	26269000	15580000	10689000	24012	2194	22756	149909;149910;149911;149912	202652;202653;202654;202655	202653			4	
IFQNLNGALDEVVLK	1	Unmodified	1671.9196	0.91957142	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									2	2	1	90.235	89.775	2	2.0165E-06	79614	160511_QHF_FH_JSI10i_2	125.54	107.27			0.89999	1.0227	14.079	5	5	Median	NaN	NaN	NaN	0	0	Median	0.77579	0.90656	17.044	2	2	Median	0.99545	0.98838	10.882	2	2	Median	1.0114	1.1522	NaN	1	1	Median	467680000	323680000	144010000	0	0	0	140190000	101840000	38360000	190750000	128760000	61984000	136740000	93078000	43664000	24013	430	22757	149913;149914;149915;149916;149917	202656;202657;202658;202659;202660	202660			5	
IFQNMSPLLELSSENLR	0	Unmodified	1990.0194	0.019361819	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	97.334	97.343	3	6.5088E-06	84309	160511_QHF_FH_JSI12i_3	91.401	73.912			1.1477	1.1345	17.288	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3663	1.282	NaN	1	0	Median	0.96403	1.0039	NaN	1	0	Median	98998000	39772000	59226000	0	0	0	0	0	0	58469000	21873000	36596000	40529000	17899000	22630000	24014	5323	22758	149918;149919	202661	202661			1	
IFQPTPPGAR	0	Unmodified	1082.5873	0.58727866	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	33.299	32.651	2	0.0021226	28572	160511_QHF_FH_JSI10i_2	77.318	56.763			0.86043	0.87981	13.634	6	1	Median	1.1917	1.0011	NaN	1	0	Median	0.8841	1.0219	19.78	2	1	Median	0.85226	0.82875	0.15573	2	0	Median	0.8493	0.87121	NaN	1	0	Median	285870000	154900000	130970000	50109000	21713000	28395000	81473000	46283000	35189000	90146000	49443000	40703000	64138000	37456000	26683000	24015	398	22759	149920;149921;149922;149923;149924;149925	202662;202663;202664;202665;202666;202667;202668;202669	202668			8	
IFQPVIEAPGASK	1	Unmodified	1355.7449	0.74490152	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	58.496	57.578	2	0.00073319	52165	160511_QHF_FH_JSI11i_1	81.865	54.75			0.92351	0.98819	17.177	3	1	Plateau	0.87397	0.75658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7408	0.7171	NaN	1	1	Median	0.92351	0.98819	NaN	1	0	Median	130960000	66308000	64651000	28515000	15031000	13484000	0	0	0	60815000	32375000	28440000	41629000	18902000	22727000	24016	4413	22760	149926;149927;149928	202670;202671;202672	202670			3	
IFQSSVFEAFLK	1	Unmodified	1414.7497	0.74965254	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.62	100.53	2	0.001801	83321	160511_QHF_FH_JSI10i_3	73.499	44.803			1.1436	1.1545	24.572	3	1	Median	NaN	NaN	NaN	0	0	Median	0.67562	0.79526	NaN	1	1	Median	1.3621	1.2644	NaN	1	0	Median	1.1436	1.1545	NaN	1	0	Median	73947000	33749000	40198000	6034000	0	6034000	16336000	11639000	4697200	16073000	5740300	10332000	35504000	16370000	19134000	24017	2257	22761	149929;149930;149931;149932	202673;202674;202675;202676	202674			4	
IFQTLNGAVDEVVLK	1	Unmodified	1644.9087	0.90867238	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	3	3	1	83.74	83.156	2	1.258E-07	73798	160511_QHF_FH_JSI10i_2	134.08	93.352			0.99994	0.93012	37.089	8	6	Median	1.0318	0.87272	NaN	1	0	Median	0.63513	0.7629	30.376	3	3	Median	1.0437	0.99131	50.562	3	3	Median	1.0946	1.229	NaN	1	0	Median	452670000	234020000	218650000	90338000	51669000	38668000	137200000	80772000	56429000	155780000	63008000	92770000	69357000	38572000	30785000	24018	140	22762	149933;149934;149935;149936;149937;149938;149939;149940	202677;202678;202679;202680;202681;202682;202683;202684;202685	202684			9	
IFQVAQELSGEDMHQFHR	0	Unmodified	2171.0218	0.021821435	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		63.562	62.559	3;4	2.0212E-07	55363	160511_QHF_FH_JSI11i_3	113.53	98.761			1.0116	0.98324	27.808	6	2	Median	1.9224	1.5704	27.202	2	2	Median	0.85767	0.98246	0.35962	2	0	Median	1.0116	0.95617	3.7008	2	0	Median	NaN	NaN	NaN	0	0	Median	669570000	282720000	386850000	131990000	50851000	81140000	200740000	94718000	106020000	336850000	137150000	199690000	0	0	0	24019	4292	22763	149941;149942;149943;149944;149945;149946	202686;202687;202688;202689;202690;202691;202692;202693;202694	202687			8	
IFRDEGGK	1	Unmodified	920.47158	0.4715802	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							4	4	4	2	7.3508	7.0557	2;3	0.0014576	4757	160511_QHF_FH_JSI9i_3	66.621	12.072			0.88503	0.86324	27.578	14	1	Median	1.0043	0.83588	17.719	4	0	Median	0.80845	0.63141	36.25	4	0	Linear	0.9099	0.83465	5.9015	4	0	Linear	0.56595	0.57857	36.24	2	1	Median	25485000000	12093000000	13392000000	8866400000	3552000000	5314300000	8505300000	4610300000	3895000000	7094800000	3440700000	3654200000	1018500000	490020000	528480000	24020	1014	22764	149947;149948;149949;149950;149951;149952;149953;149954;149955;149956;149957;149958;149959;149960	202695;202696;202697;202698;202699;202700;202701;202702;202703;202704;202705;202706;202707;202708;202709;202710;202711;202712;202713;202714;202715;202716;202717	202704			23	
IFRDGEEAGAYDGPR	0	Unmodified	1651.759	0.75904803	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.56		7	10					1	4	5	7	6	4	31.056	28.246	2;3	9.3883E-15	23422	160511_QHF_FH_JSI10i_3	168.31	145.39			0.98507	0.97366	16.4	21	2	Median	1.2286	1.0554	14.151	5	0	Median	0.82426	0.97146	13.568	6	1	Median	1.0243	1.0278	21.023	6	0	Median	0.85931	0.88806	11.566	4	1	Median	6948500000	3427000000	3521500000	1784600000	803050000	981510000	3192100000	1664500000	1527600000	1635600000	783920000	851700000	336240000	175560000	160680000	24021	1344	22765	149961;149962;149963;149964;149965;149966;149967;149968;149969;149970;149971;149972;149973;149974;149975;149976;149977;149978;149979;149980;149981;149982	202718;202719;202720;202721;202722;202723;202724;202725;202726;202727;202728;202729;202730;202731;202732;202733;202734;202735;202736;202737;202738;202739;202740;202741;202742;202743;202744;202745;202746;202747;202748;202749;202750;202751;202752;202753;202754;202755;202756;202757;202758;202759;202760;202761	202726			44	
IFREDYSITTK	1	Unmodified	1371.7034	0.70343063	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			38.57	37.095	3	0.0031721	30822	160511_QHF_FH_JSI10i_3	58.098	45.143			1.3573	1.5247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3573	1.5247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	437450000	265780000	171670000	0	0	0	437450000	265780000	171670000	0	0	0	0	0	0	24022	4449	22766	149983	202762	202762			1	
IFRQPQGHLLLIGVSGAGK	1	Unmodified	1990.1476	0.1476143	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	69.602	60.893	4	0.00016411	32184	160513_QHF_FH_JSI12Kac_6	68.653	35.964			1.2719	1.2733	9.6009	3	0	Median	1.2863	1.0917	NaN	1	0	Median	1.0665	1.2733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2719	1.3023	NaN	1	0	Median	160160000	66109000	94056000	43398000	20339000	23059000	97425000	36356000	61070000	0	0	0	19342000	9413900	9927800	24023	2517	22767	149984;149985;149986	202763;202764;202765	202763			3	
IFSAEIIYHLFDAFTK	1	Unmodified	1913.9927	0.99273636	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	1	3	2	3	99.91	93.784	2;3	3.3312E-24	54248	160513_QHF_FH_JSI10Kac_6	139.08	115.24			0.85916	0.89749	29.95	8	2	Median	0.94473	0.80659	NaN	1	0	Median	0.89865	1.0383	6.6716	3	1	Median	1.0811	1.0191	51.268	2	0	Median	0.61339	0.64333	10.503	2	1	Median	9788900000	5456500000	4332400000	1729200000	980810000	748390000	4009300000	1974600000	2034800000	1690300000	946160000	744130000	2360100000	1555000000	805130000	24024	454	22768	149987;149988;149989;149990;149991;149992;149993;149994;149995	202766;202767;202768;202769;202770;202771;202772;202773;202774;202775;202776	202775			11	
IFSAVQQFYQPK	1	Unmodified	1454.7558	0.75580056	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	1	3	3	65.797	64.856	2	7.0357E-06	55947	160511_QHF_FH_JSI12i_3	123.75	96.321			0.88707	0.81111	64.307	10	10	Median	1.6101	0.82356	56.803	3	3	Plateau	0.53243	0.61363	NaN	1	1	Median	0.69389	0.65716	40.691	3	3	Median	1.2567	1.2743	77.39	3	3	Median	710610000	443930000	266690000	88660000	40498000	48163000	38425000	22049000	16376000	365610000	276730000	88881000	217910000	104650000	113270000	24025	5034	22769	149996;149997;149998;149999;150000;150001;150002;150003;150004;150005	202777;202778;202779;202780;202781;202782;202783;202784;202785;202786	202786			10	
IFSAYIK	1	Unmodified	840.47454	0.47454032	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	43.525	42.705	2	0.027514	36286	160511_QHF_FH_JSI12i_3	53.554	13.451			1.0721	1.0417	11.554	5	0	Median	1.1093	0.94134	NaN	1	0	Median	0.84671	1.0337	NaN	1	0	Median	1.0389	1.0417	NaN	1	0	Median	1.1542	1.2163	5.5729	2	0	Median	1157600000	569770000	587830000	165160000	76370000	88794000	266800000	151000000	115800000	244710000	123630000	121080000	480930000	218770000	262150000	24026	255	22770	150006;150007;150008;150009;150010	202787;202788;202789;202790;202791;202792	202791			6	
IFSFAHQTISALIK	1	Unmodified	1574.8821	0.8820637	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.81	6.49			10						11	6	5	6	4	81.611	77.112	2;3	6.1831E-71	39210	160513_QHF_FH_JSI9Kac_6	248.19	203.03			0.79274	0.79338	95.551	21	12	Median	0.6552	0.53	155.83	6	5	Median	0.91654	1.0963	39.95	5	2	Median	0.72719	0.69059	93.322	6	4	Median	0.79156	0.81075	7.4552	4	1	Median	12879000000	5975500000	6903300000	4542400000	2106400000	2436100000	4201500000	2080000000	2121500000	3240600000	1345100000	1895600000	894270000	444080000	450190000	24027	4212	22771	150011;150012;150013;150014;150015;150016;150017;150018;150019;150020;150021;150022;150023;150024;150025;150026;150027;150028;150029;150030;150031	202793;202794;202795;202796;202797;202798;202799;202800;202801;202802;202803;202804;202805;202806;202807;202808;202809;202810;202811;202812;202813;202814;202815;202816;202817;202818;202819;202820;202821;202822	202810			30	
IFSFLLNTLQENVNK	1	Unmodified	1778.9567	0.95668521	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4		3	2	1	95.014	89.947	2;3	7.0373E-43	48791	160513_QHF_FH_JSI10Kac_6	225.55	189.12			4.6736	5.2876	127.96	4	4	Linear	NaN	NaN	NaN	0	0	Median	1.9121	2.2323	166.76	2	2	Median	1.0823	1.0011	NaN	1	1	Median	0.3523	0.3787	NaN	1	1	Median	390420000	195270000	195150000	0	0	0	256220000	129830000	126390000	107340000	43585000	63750000	26866000	21861000	5004800	24028	4831	22772	150032;150033;150034;150035;150036;150037	202823;202824;202825;202826;202827;202828	202828			6	
IFSGSSHQDLSQK	1	Unmodified	1432.6947	0.69465686	1920	P60891;P21108	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.91		10	8					3	4	6	6	6	7	19.288	16.442	2;3	9.3343E-16	13173	160511_QHF_FH_JSI12i_3	166.14	152.79			1.0158	0.99585	31.465	25	6	Median	1.1294	0.98256	25.596	6	1	Median	0.92267	1.0944	14.444	6	0	Median	0.95681	0.9613	39.544	6	1	Median	0.9403	0.98388	40.59	7	4	Median	7183800000	3552100000	3631700000	696770000	246430000	450350000	1176200000	585210000	591030000	2218400000	1029100000	1189400000	3092300000	1691400000	1401000000	24029	1920	22773	150038;150039;150040;150041;150042;150043;150044;150045;150046;150047;150048;150049;150050;150051;150052;150053;150054;150055;150056;150057;150058;150059;150060;150061;150062	202829;202830;202831;202832;202833;202834;202835;202836;202837;202838;202839;202840;202841;202842;202843;202844;202845;202846;202847;202848;202849;202850;202851;202852;202853;202854;202855;202856;202857;202858;202859;202860;202861;202862;202863;202864;202865;202866;202867;202868	202863			40	
IFSGVFVK	1	Unmodified	895.51674	0.51673948	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.003	55.167	2	0.021912	46254	160511_QHF_FH_JSI10i_3	44.447	15.935			0.81806	0.6551	11.392	4	0	Linear	0.91628	0.75376	NaN	1	0	Median	0.82185	0.92394	NaN	1	0	Median	0.81429	0.77371	NaN	1	0	Median	0.70022	0.70847	NaN	1	0	Median	566640000	316660000	249970000	119580000	70499000	49078000	106350000	52896000	53459000	107670000	53106000	54567000	233030000	140160000	92870000	24030	3037	22774	150063;150064;150065;150066	202869;202870;202871;202872;202873;202874	202870			6	
IFSIIAEGEMHEAIK	1	Unmodified	1686.8651	0.86509301	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	3	3	70.889	70.253	2;3	1.0682E-11	60655	160511_QHF_FH_JSI12i_3	110.08	77.131			1.2274	1.4049	46.218	7	5	Median	1.8565	1.6123	NaN	1	1	Median	0.91963	1.1465	NaN	1	0	Median	1.1788	1.1258	58.451	3	2	Median	1.7985	1.9539	46.655	2	2	Median	770710000	351800000	418910000	78083000	30156000	47927000	98278000	41311000	56967000	340830000	175010000	165820000	253520000	105320000	148190000	24031	127	22775	150067;150068;150069;150070;150071;150072;150073;150074;150075	202875;202876;202877;202878;202879;202880;202881;202882;202883;202884;202885;202886;202887;202888	202888			14	
IFSIVEQR	0	Unmodified	990.54983	0.54983053	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	45.294	44.646	2	0.0081696	38113	160511_QHF_FH_JSI12i_3	57.281	10.214			1.2647	1.1573	12.796	7	1	Median	1.3716	1.1573	NaN	1	0	Median	1.2647	1.5627	NaN	1	0	Median	1.2563	1.2182	9.7519	3	1	Plateau	1.0528	1.1263	3.6385	2	0	Median	2054600000	938720000	1115900000	216370000	80307000	136060000	330950000	180200000	150750000	803160000	356130000	447030000	704100000	322090000	382020000	24032	1012	22776	150076;150077;150078;150079;150080;150081;150082	202889;202890;202891;202892;202893	202893			5	
IFSLLSGEGNVTFNGHK	1	Unmodified	1818.9264	0.92644771	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.563	71.086	3	0.052914	58285	160511_QHF_FH_JSI9i_3	19.39	10.447			1.3339	1.1006	NaN	1	0	Median	1.3339	1.1006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68330000	21932000	46398000	68330000	21932000	46398000	0	0	0	0	0	0	0	0	0	24033	5451	22777	150083	202894	202894			1	
IFSLSGTLETVR	0	Unmodified	1321.7242	0.72416608	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	73.605	73.027	2	7.9623E-05	63357	160511_QHF_FH_JSI12i_3	105.4	48.834			0.87336	0.90029	15.63	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0105	1.1641	NaN	1	0	Median	0.93278	0.8775	NaN	1	1	Median	0.87336	0.90029	NaN	1	1	Median	314660000	160450000	154210000	0	0	0	46029000	23895000	22134000	121930000	59504000	62423000	146710000	77052000	69654000	24034	5534	22778	150084;150085;150086	202895;202896;202897;202898	202898			4	
IFSNTDPDK	1	Unmodified	1035.4873	0.48728985	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.421	15.948	2	0.047422	13086	160511_QHF_FH_JSI9i_1	36.381	21.712			1.0657	1.0603	25.949	4	0	Median	1.0948	0.91222	NaN	1	0	Median	1.0374	1.2325	NaN	1	0	Median	0.91836	0.88676	NaN	1	0	Median	1.4636	1.528	NaN	1	0	Median	716710000	342260000	374460000	212730000	85159000	127570000	190440000	110530000	79914000	159070000	82647000	76421000	154480000	63924000	90551000	24035	2858	22779	150087;150088;150089;150090	202899	202899			1	
IFSNTDPDKK	2	Unmodified	1163.5823	0.58225287	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		11.812	11.812	3	0.036903	9348	160511_QHF_FH_JSI11i_3	29.341	11.073			2.3615	2.1265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3615	2.1265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40007000	15220000	24787000	0	0	0	0	0	0	40007000	15220000	24787000	0	0	0	24036	2858	22780	150091	202900	202900			1	
IFSPHEPILEGSR	0	Unmodified	1480.7674	0.76742787	2098	P78563	ADARB1	Double-stranded RNA-specific editase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		46.422	46.422	2	0.0093567	40989	160511_QHF_FH_JSI11i_3	46.606	21.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24037	2098	22781	150092	202901	202901			1	
IFSPNVVNLTLVDLPGMTK	1	Unmodified	2057.1231	0.12309861	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.3	0.458		7	3							2	3	2	3	101.85	101.77	2;3	4.3959E-99	88575	160511_QHF_FH_JSI12i_3	259.08	228.53			1.1727	1.1095	24.309	10	0	Median	1.3886	1.1731	25.261	2	0	Median	0.84574	1.0488	33.872	3	0	Median	0.97795	0.9906	23.994	2	0	Median	1.2431	1.283	23.66	3	0	Median	2182500000	1112900000	1069600000	302260000	152820000	149440000	546960000	334740000	212220000	326320000	165060000	161260000	1007000000	460300000	546700000	24038	133	22782	150093;150094;150095;150096;150097;150098;150099;150100;150101;150102	202902;202903;202904;202905;202906	202905			5	
IFSQETLTK	1	Unmodified	1065.5706	0.57062555	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0.707	1	2	1							3	1			34.337	33.37	2	0.018992	28906	160511_QHF_FH_JSI9i_2	51.066	37.487			1.0118	0.99561	50.763	4	3	Median	1.0877	0.87026	61.458	3	2	Median	0.9413	1.139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	718980000	375820000	343160000	447130000	207590000	239540000	271840000	168230000	103620000	0	0	0	0	0	0	24039	5300	22783	150103;150104;150105;150106	202907;202908;202909;202910	202909			4	
IFSQMNNIMSK	1	Unmodified	1311.6315	0.63152802	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			55.978	54.431	2	0.00071433	45452	160511_QHF_FH_JSI10i_3	81.865	59.779			1.1984	1.3912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1984	1.3912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37266000	17921000	19345000	0	0	0	37266000	17921000	19345000	0	0	0	0	0	0	24040	4936	22784	150107	202911	202911			1	
IFSSLHVSGEQLSQLTGVAAILR	0	Unmodified	2425.3329	0.33290846	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.454	84.733	3	4.9416E-06	48173	160513_QHF_FH_JSI10Kac_6	115.96	94.362			0.82977	1.0028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82977	1.0028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64565000	31637000	32928000	0	0	0	64565000	31637000	32928000	0	0	0	0	0	0	24041	4387	22785	150108	202912	202912			1	
IFSSSEHAPPAATSR	0	Unmodified	1556.7583	0.75831975	3007	Q5XPI4	RNF123	E3 ubiquitin-protein ligase RNF123	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			21.462	20.257	3	0.0031975	16536	160511_QHF_FH_JSI10i_3	51.643	38.811			0.78626	0.9255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78626	0.9255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16415000	8331100	8083700	0	0	0	16415000	8331100	8083700	0	0	0	0	0	0	24042	3007	22786	150109	202913	202913			1	
IFSSVQWLSGVK	1	Unmodified	1349.7343	0.73433683	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	2	1		1	80.04	79.049	2	0.00047041	68616	160511_QHF_FH_JSI12i_3	86.344	59.041			1.069	0.84084	20.523	3	3	Plateau	1.2072	0.96167	NaN	1	1	Median	1.069	1.2582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84639	0.84084	NaN	1	1	Median	251520000	141320000	110200000	52888000	28005000	24883000	44489000	26601000	17888000	0	0	0	154140000	86716000	67425000	24043	4582	22787	150110;150111;150112;150113	202914;202915;202916;202917	202917			4	
IFSSVQWLSGVKPVLSTK	2	Unmodified	1975.1142	0.11424848	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	88.013	85.268	3	3.2324E-05	79809	160511_QHF_FH_JSI11i_3	79.311	68.843			0.90394	0.9269	24.976	6	1	Median	1.2454	1.0421	33.643	2	1	Median	0.80237	0.9269	4.9593	2	0	Median	1.1634	1.0858	NaN	1	0	Median	0.64349	0.6344	NaN	1	0	Median	445730000	231830000	213900000	133430000	61238000	72192000	168030000	93502000	74526000	117120000	62098000	55018000	27157000	14995000	12162000	24044	4582	22788	150114;150115;150116;150117;150118;150119	202918;202919;202920;202921;202922;202923;202924;202925;202926;202927;202928;202929	202919			12	
IFSVIHSNDPVAR	0	Unmodified	1453.7678	0.76776223	5033	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				44.992	43.392	3	0.05688	35456	160511_QHF_FH_JSI9i_3	19.578	5.672			1.9393	1.6613	NaN	1	1	Median	1.9393	1.6613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9100100	3476400	5623700	9100100	3476400	5623700	0	0	0	0	0	0	0	0	0	24045	5033	22789	150120	202930	202930			1	
IFTALPLGNPIYQMLELK	1	Unmodified	2060.138	0.13802039	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		3	1	102.78	102.76	2;3	3.2167E-41	91883	160511_QHF_FH_JSI11i_3	166.38	135.15			1.442	1.3643	41.122	4	2	Median	3.5461	2.9725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.442	1.3303	10.786	2	1	Median	1.2644	1.2965	NaN	1	0	Median	241080000	83387000	157700000	73489000	11392000	62097000	0	0	0	49677000	22447000	27230000	117920000	49547000	68371000	24046	201	22790	150121;150122;150123;150124;150125	202931;202932;202933;202934;202935	202932			5	
IFTASNVSSVPLPAENVTITAGQR	0	Unmodified	2471.302	0.30200227	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.64	6	5	1							2	4	1	5	83.624	83.119	2;3	4.0933E-16	75875	160511_QHF_FH_JSI12i_1	113.42	100.29			1.0667	1.177	30.375	9	2	Median	1.3417	1.1221	29.251	2	0	Median	1.0137	1.2013	15.871	3	1	Plateau	1.1985	1.177	NaN	1	0	Median	1.0667	1.0957	49.094	3	1	Median	770100000	353240000	416860000	126300000	46878000	79422000	260650000	117590000	143070000	110450000	50003000	60450000	272700000	138780000	133920000	24047	2505	22791	150126;150127;150128;150129;150130;150131;150132;150133;150134;150135;150136;150137	202936;202937;202938;202939;202940;202941;202942;202943;202944;202945;202946;202947	202940			12	
IFTDIFHYLEVLFR	0	Unmodified	1811.961	0.9610423	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.72	93.269	3	6.8597E-12	55914	160513_QHF_FH_JSI10Kac_6	128.76	118.71			0.83594	0.84809	15.887	2	1	Median	0.8801	0.75797	NaN	1	1	Median	0.794	0.94892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	726130000	424440000	301690000	117320000	63864000	53460000	608800000	360570000	248230000	0	0	0	0	0	0	24048	3482	22792	150138;150139	202948;202949;202950	202950			3	
IFTDLQSEGFPVIETSTLTEEGVIK	1	Unmodified	2752.4059	0.40585821	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	101.43	101.33	3	2.6499E-29	91900	160511_QHF_FH_JSI12i_1	166.6	151.83			0.79448	0.83716	22.423	3	0	Median	1.2077	1.0067	NaN	1	0	Median	0.55305	0.64432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79448	0.83716	NaN	1	0	Median	699650000	366750000	332890000	97413000	36290000	61123000	210600000	127270000	83337000	168060000	83513000	84547000	223570000	119680000	103890000	24049	4559	22793	150140;150141;150142;150143	202951	202951			1	
IFTFAEK	1	Unmodified	854.4538	0.45380487	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	43.726	42.881	2	0.04193	37543	160511_QHF_FH_JSI11i_3	46.426	13.955			1.2972	1.2388	4.4102	4	0	Median	1.4978	1.2162	NaN	1	0	Median	1.0918	1.2618	NaN	1	0	Median	1.3071	1.1997	NaN	1	0	Median	1.2875	1.324	NaN	1	0	Median	871170000	408920000	462260000	78602000	33916000	44686000	65888000	31135000	34753000	349270000	167050000	182220000	377410000	176810000	200600000	24050	1823	22794	150144;150145;150146;150147	202952;202953;202954	202952			3	
IFTFGSYR	0	Unmodified	989.49707	0.49706667	1724	P51003;Q9NRJ5;Q9BWT3	PAPOLA;PAPOLB;PAPOLG	Poly(A) polymerase alpha;Poly(A) polymerase beta;Poly(A) polymerase gamma	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.845	53.282	2	0.020544	43654	160511_QHF_FH_JSI9i_3	45.718	18.193			0.99593	0.97123	5.4861	2	0	Median	1.2307	1.0096	NaN	1	0	Median	0.80596	0.93427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87713000	44499000	43214000	45172000	21504000	23668000	42541000	22995000	19546000	0	0	0	0	0	0	24051	1724	22795	150148;150149	202955	202955			1	
IFTFGTWIYSVNK	1	Unmodified	1574.8133	0.81331543	2139	P98170	XIAP	E3 ubiquitin-protein ligase XIAP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	1	3	90.185	81.867	2;3	3.074E-40	45474	160513_QHF_FH_JSI9Kac_6	222.74	175.85			0.88098	0.80454	30.21	8	3	Median	0.87108	0.74983	4.0361	2	1	Median	0.69895	0.83367	44.148	2	0	Median	0.87554	0.83894	NaN	1	0	Median	0.70423	0.75052	40.125	3	2	Plateau	1293800000	756310000	537510000	291820000	150190000	141620000	372870000	242070000	130800000	292580000	155590000	136990000	336550000	208460000	128090000	24052	2139	22796	150150;150151;150152;150153;150154;150155;150156;150157	202956;202957;202958;202959;202960;202961;202962;202963;202964;202965;202966	202959			11	
IFTIESTR	0	Unmodified	965.5182	0.51819605	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	37.219	36.431	2	0.0014643	32078	160511_QHF_FH_JSI10i_2	89.142	58.424			0.93476	1.1275	13.572	5	0	Median	1.3444	1.1276	NaN	1	0	Median	0.91857	1.1275	NaN	1	0	Median	0.90864	0.92356	NaN	1	0	Median	1.1096	1.1609	19.012	2	0	Median	1303200000	601820000	701430000	232830000	91607000	141230000	274060000	136400000	137660000	382520000	186840000	195680000	413830000	186970000	226860000	24053	2517	22797	150158;150159;150160;150161;150162	202967;202968;202969;202970;202971;202972;202973	202971			7	
IFTLGNSEFPVSWDNEVK	1	Unmodified	2081.0106	0.010571271	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.07	98.07	3	0.030219	87246	160511_QHF_FH_JSI11i_3	31.297	22.251			1.6157	1.5374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6157	1.5374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17842000	6865500	10977000	0	0	0	0	0	0	17842000	6865500	10977000	0	0	0	24054	3312	22798	150163	202974	202974			1	
IFTLNLSAPFISQFYK	1	Unmodified	1888.0135	0.013471805	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	3	4	4	3	99.221	94.376	2;3	1.1471E-120	49972	160513_QHF_FH_JSI11Kac_6	331.25	266.82			0.95452	1.1348	11.307	13	1	Linear	1.111	0.95741	0.62653	2	0	Median	0.8441	0.99146	12.162	4	1	Median	1.0934	1.0318	18.391	4	0	Median	0.95452	0.99989	2.6921	3	0	Median	7124000000	3510300000	3613800000	954270000	423500000	530770000	1711000000	893450000	817570000	1876500000	827530000	1049000000	2582200000	1365800000	1216400000	24055	1856	22799	150164;150165;150166;150167;150168;150169;150170;150171;150172;150173;150174;150175;150176;150177	202975;202976;202977;202978;202979;202980;202981;202982;202983;202984;202985;202986;202987;202988;202989;202990;202991;202992;202993;202994;202995;202996;202997	202982			23	
IFTMAEVYGIR	0	Unmodified	1298.6693	0.66929373	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	1	2	2	2	77.828	72.72	2	7.3323E-05	37117	160513_QHF_FH_JSI12Kac_6	95.642	63.882			1.0791	1.1009	22.363	7	4	Median	1.5281	1.3038	NaN	1	1	Median	0.97301	1.169	25.185	2	1	Median	1.0324	1.0023	13.274	2	1	Median	0.86118	0.93766	34.779	2	1	Median	1042200000	497590000	544610000	103230000	35168000	68062000	435360000	218130000	217230000	274650000	126410000	148240000	228960000	117890000	111080000	24056	4193	22800	150178;150179;150180;150181;150182;150183;150184	202998;202999;203000;203001;203002;203003;203004	203003			7	
IFTPIVEHLGLQIR	0	Unmodified	1634.9508	0.95081197	4968	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	87.619	87.016	3	7.4141E-05	72961	160511_QHF_FH_JSI10i_3	80.746	75.592			0.93704	0.88471	6.2681	4	0	Linear	1.2908	1.0527	NaN	1	0	Median	0.8107	0.9413	NaN	1	0	Median	0.97771	0.92916	NaN	1	0	Median	0.89806	0.91965	NaN	1	0	Median	196980000	103530000	93455000	37888000	16244000	21644000	38179000	20937000	17241000	54191000	26400000	27792000	66724000	39947000	26778000	24057	4968	22801	150185;150186;150187;150188;150189	203005;203006;203007;203008;203009;203010;203011	203008			7	
IFTPLLHQIELEK	1	Unmodified	1579.8974	0.89737941	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	5.95		7	9	1					6	5	5	8	5	80.358	78.039	2;3	1.3331E-22	66984	160511_QHF_FH_JSI10i_3	159.08	146.94			0.90727	0.86839	43.137	19	3	Median	1.4257	1.1382	45.693	5	0	Median	0.90727	1.0217	60.862	5	0	Median	0.86365	0.83004	12.131	5	2	Median	0.70234	0.73972	16.945	4	1	Median	19917000000	9458300000	10458000000	2595800000	1070600000	1525100000	3826400000	1698200000	2128200000	6490800000	3175800000	3315000000	7003600000	3513700000	3489800000	24058	1000	22802	150190;150191;150192;150193;150194;150195;150196;150197;150198;150199;150200;150201;150202;150203;150204;150205;150206;150207;150208;150209;150210;150211;150212	203012;203013;203014;203015;203016;203017;203018;203019;203020;203021;203022;203023;203024;203025;203026;203027;203028;203029;203030;203031;203032;203033;203034;203035;203036;203037;203038;203039;203040;203041;203042;203043;203044;203045;203046;203047;203048;203049;203050;203051;203052;203053;203054;203055;203056;203057;203058;203059;203060;203061;203062;203063;203064;203065;203066;203067;203068;203069;203070;203071;203072;203073;203074;203075;203076;203077;203078;203079;203080	203027			69	
IFTPLLHQIELEKPK	2	Unmodified	1805.0451	0.045106284	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			74.968	73.538	4	0.0038327	61647	160511_QHF_FH_JSI10i_3	51.147	40.203			0.60622	0.70262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60622	0.70262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12692000	7726500	4965400	0	0	0	12692000	7726500	4965400	0	0	0	0	0	0	24059	1000	22803	150213	203081	203081			1	
IFTSIGEDYDER	0	Unmodified	1443.6518	0.65178899	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	6.24	4	5	4					4	2	5	4	5	5	52.713	48.861	2	1.877E-31	42032	160511_QHF_FH_JSI12i_2	190.96	161.8			0.9999	0.95737	23.435	19	3	Median	1.1349	0.93328	7.3939	5	1	Median	0.81012	0.96247	3.7038	4	0	Median	0.9999	1.0106	36.753	5	1	Median	0.89633	0.95737	30.263	5	1	Median	11614000000	5969300000	5644400000	1775300000	802190000	973080000	2459500000	1336000000	1123500000	3446000000	1622200000	1823800000	3932800000	2208900000	1724000000	24060	1424	22804	150214;150215;150216;150217;150218;150219;150220;150221;150222;150223;150224;150225;150226;150227;150228;150229;150230;150231;150232	203082;203083;203084;203085;203086;203087;203088;203089;203090;203091;203092;203093;203094;203095;203096;203097;203098;203099;203100;203101;203102;203103;203104;203105;203106;203107;203108;203109;203110;203111;203112;203113;203114;203115;203116;203117;203118;203119;203120;203121	203088			40	
IFTSIGEDYDERVLPSITTEILK	1	Unmodified	2638.3742	0.37416416	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								2		1	101.15	101.07	3	1.95E-20	87771	160511_QHF_FH_JSI12i_3	147.21	127.66			1.5513	1.6737	38.123	2	2	Median	NaN	NaN	NaN	0	0	Median	1.926	2.1916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2494	1.2782	NaN	1	1	Median	154150000	55590000	98558000	0	0	0	36063000	11703000	24360000	0	0	0	118080000	43886000	74197000	24061	1424	22805	150233;150234;150235	203122;203123;203124	203124			3	
IFTSNTHSSVVLQGFDQLR	0	Unmodified	2148.0964	0.096366586	5221	Q9P2N7	KLHL13	Kelch-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			72.907	71.445	3	5.1806E-05	58730	160511_QHF_FH_JSI9i_3	63.337	53.922			0.97929	0.96018	12.876	2	1	Median	1.2767	1.0517	NaN	1	0	Median	0.75118	0.87662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39096000	24155000	14941000	21007000	11469000	9538900	18088000	12686000	5401900	0	0	0	0	0	0	24062	5221	22806	150236;150237	203125;203126	203126			2	
IFTTGDVNK	1	Unmodified	993.51311	0.51311067	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.2	0.4	4	1								1	1	2	1	24.344	23.832	2	0.05504	20789	160511_QHF_FH_JSI11i_1	40.002	14.265			1.0261	0.98022	19.235	5	0	Median	1.0261	0.83422	NaN	1	0	Median	0.83719	0.98022	NaN	1	0	Median	0.92427	0.92503	31.007	2	0	Median	1.0799	1.1384	NaN	1	0	Median	1048900000	521050000	527880000	225430000	108560000	116870000	236970000	126160000	110810000	365170000	175400000	189770000	221360000	110930000	110420000	24063	3071	22807	150238;150239;150240;150241;150242	203127;203128;203129	203127			3	
IFTVGHQVPDDETIFK	1	Unmodified	1844.9309	0.93086439	499	O75319	DUSP11	RNA/RNP complex-1-interacting phosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	66.665	66.517	3	5.8128E-05	57517	160511_QHF_FH_JSI12i_3	74.141	57.742			0.96527	0.92509	13.553	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91465	0.84055	NaN	1	0	Median	1.0187	1.0181	NaN	1	0	Median	92245000	54388000	37857000	0	0	0	0	0	0	38906000	19559000	19346000	53340000	34829000	18511000	24064	499	22808	150243;150244	203130;203131	203131			2	
IFTYINSWTQR	0	Unmodified	1427.7197	0.7197494	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.944	68.434	2	0.00087225	37269	160513_QHF_FH_JSI10Kac_6	83	40.257			0.75418	0.89806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75418	0.89806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38604000	15335000	23269000	0	0	0	38604000	15335000	23269000	0	0	0	0	0	0	24065	3198	22809	150245	203132	203132			1	
IFVEFSIASETHK	1	Unmodified	1506.7718	0.77184455	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	2	4	67.431	66.889	2;3	2.2332E-11	57744	160511_QHF_FH_JSI12i_3	124.12	119.04			0.66346	0.79768	33.346	5	0	Median	NaN	NaN	NaN	0	0	Median	0.65945	0.79768	NaN	1	0	Median	0.66346	0.61324	NaN	1	0	Median	0.8738	0.89953	43.145	3	0	Median	537460000	269690000	267770000	0	0	0	50832000	25567000	25265000	112840000	44727000	68114000	373790000	199400000	174390000	24066	5315	22810	150246;150247;150248;150249;150250;150251;150252	203133;203134;203135;203136;203137;203138;203139;203140;203141	203139			8	
IFVEFTSVFDCQK	1	Unmodified	1618.7701	0.77012999	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	93.926	93.425	2;3	3.1563E-06	82052	160511_QHF_FH_JSI11i_2	126.67	110.42			1.2893	1.3498	45.34	5	1	Median	NaN	NaN	NaN	0	0	Median	0.49757	0.57859	NaN	1	1	Median	1.1024	1.1356	24.44	2	0	Median	1.5447	1.6715	10.478	2	0	Median	99697000	39135000	60563000	0	0	0	5721200	3683800	2037400	57513000	22363000	35151000	36463000	13088000	23375000	24067	1274	22811	150253;150254;150255;150256;150257	203142;203143;203144;203145;203146;203147;203148;203149;203150	203149			9	
IFVFEPPPGVK	1	Unmodified	1228.6856	0.68559572	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	4	6	4							2	4	4	4	76.522	75.832	2;3	3.7991E-07	66633	160511_QHF_FH_JSI11i_2	118.26	88.455			1.1499	1.2796	9.7337	11	4	Median	1.5235	1.2726	8.0087	2	0	Median	1.0758	1.33	2.3004	3	1	Plateau	1.17	1.1489	15.64	4	2	Median	1.1808	1.263	6.3479	2	1	Median	714980000	318300000	396680000	110210000	42941000	67269000	136270000	68658000	67607000	285960000	122000000	163970000	182540000	84704000	97835000	24068	2517	22812	150258;150259;150260;150261;150262;150263;150264;150265;150266;150267;150268;150269;150270;150271	203151;203152;203153;203154;203155;203156;203157;203158;203159;203160;203161;203162;203163;203164;203165;203166;203167;203168	203165			18	
IFVGGIKEDTEEHHLRDYFEQYGK	2	Acetyl (K)	2951.409	0.40898653	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	1	0	0	2		By MS/MS	By MS/MS		16	0									3		2	1		79.19	72.253	4	6.4159E-09	39788	160513_QHF_FH_JSI10Kac_6	129.78	117.82			0.1563	0.16733	47.046	2	2	Median	NaN	NaN	NaN	0	0	Median	0.10136	0.11998	NaN	1	1	Median	0.24103	0.23337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	249610000	141880000	107730000	0	0	0	226680000	120420000	106270000	22925000	21461000	1464000	0	0	0	24069	936	22813	150272;150273;150274	203169;203170;203171	203170	695		3	
IFVGGIPHNCGETELREYFK	1	Unmodified	2365.1525	0.15250126	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		72.342	72.342	4	0.013718	64405	160511_QHF_FH_JSI11i_3	29.766	25.149			0.94657	0.89962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94657	0.89962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42772000	22523000	20249000	0	0	0	0	0	0	42772000	22523000	20249000	0	0	0	24070	4053	22814	150275	203172	203172			1	
IFVGGLSANTVVEDVK	1	Unmodified	1646.8879	0.88793694	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	79.921	79.346	2	3.2856E-07	68894	160511_QHF_FH_JSI12i_3	135.02	109.4			0.95054	0.91361	13.549	6	2	Median	1.0041	0.86628	NaN	1	0	Median	0.57617	0.71732	NaN	1	0	Median	0.97534	0.96954	6.9447	2	1	Median	0.9105	0.97353	10.443	2	1	Median	398980000	215520000	183450000	58860000	27741000	31119000	67817000	51028000	16789000	138110000	67535000	70576000	134190000	69219000	64969000	24071	4028	22815	150276;150277;150278;150279;150280;150281;150282	203173;203174;203175;203176;203177;203178;203179;203180	203180			6	
IFVGGLSPDTPEEK	1	Unmodified	1487.7508	0.75077476	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	6.14	8	8	5			2	4	7		6	11	7	10	61.72	57.653	2;3	4.1087E-52	50191	160511_QHF_FH_JSI11i_2	220.1	201.32			0.99896	1.0207	23.285	30	2	Median	1.2421	1.022	17.498	6	0	Median	0.79857	0.93472	18.387	8	0	Median	1.0248	1.0008	34.704	7	1	Median	0.96724	1.0421	22.721	9	1	Median	14310000000	7371500000	6938900000	3169000000	1471900000	1697000000	3241900000	1753900000	1488000000	3923600000	2038500000	1885100000	3975900000	2107200000	1868700000	24072	2488	22816	150283;150284;150285;150286;150287;150288;150289;150290;150291;150292;150293;150294;150295;150296;150297;150298;150299;150300;150301;150302;150303;150304;150305;150306;150307;150308;150309;150310;150311;150312;150313;150314;150315;150316	203181;203182;203183;203184;203185;203186;203187;203188;203189;203190;203191;203192;203193;203194;203195;203196;203197;203198;203199;203200;203201;203202;203203;203204;203205;203206;203207;203208;203209;203210;203211;203212;203213;203214;203215;203216;203217;203218;203219;203220;203221;203222;203223;203224;203225;203226;203227;203228;203229;203230;203231;203232;203233;203234;203235;203236;203237;203238;203239;203240;203241	203225			60	
IFVGNVSAACTSQELR	0	Unmodified	1750.8672	0.86721827	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.4		3	3					1		1	2	2	2	59.058	56.783	2	2.0303E-65	50169	160511_QHF_FH_JSI10i_2	231.83	185.83			1.1565	1.1508	16.79	7	1	Median	1.3282	1.1508	NaN	1	0	Median	1.0297	1.2336	14.381	2	0	Median	1.3493	1.2566	36.876	2	1	Median	1.0918	1.154	4.4718	2	0	Median	467780000	230960000	236830000	41703000	16715000	24987000	100810000	53908000	46900000	147890000	72344000	75542000	177390000	87990000	89396000	24073	4197	22817	150317;150318;150319;150320;150321;150322;150323	203242;203243;203244;203245;203246;203247;203248;203249;203250;203251;203252;203253;203254	203252			13	
IFVGTKGIPHLVTHDAR	1	Acetyl (K)	1902.0476	0.0475659	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	69.87	60.972	3;4	1.9914E-11	33265	160513_QHF_FH_JSI10Kac_6	124.29	108.65			0.91415	1.0089	19.73	8	0	Median	1.3164	1.1361	4.2197	2	0	Median	1.0345	1.2216	17.888	2	0	Median	0.84232	0.80758	12.464	2	0	Median	0.86405	0.91239	5.0683	2	0	Median	1897800000	979690000	918090000	301190000	128100000	173080000	666770000	337210000	329550000	444180000	259680000	184500000	485650000	254700000	230950000	24074	2013	22818	150324;150325;150326;150327;150328;150329;150330;150331	203255;203256;203257;203258;203259;203260;203261;203262;203263;203264;203265;203266;203267;203268;203269;203270	203268	2041		16	
IFVHYPR	0	Unmodified	930.50757	0.50757178	4354	Q9BQ95	ECSIT	Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	3	1	1	37.054	30.514	3	0.0044556	24683	160511_QHF_FH_JSI9i_3	59.205	44.054			0.8722	0.94875	10.968	6	1	Median	1.29	1.0703	13.914	2	0	Median	0.81649	0.94875	3.0177	2	1	Median	0.88071	0.87025	NaN	1	0	Median	0.80524	0.88637	NaN	1	0	Median	130090000	62806000	67282000	56131000	22168000	33963000	53088000	29587000	23501000	12955000	6159000	6796000	7914100	4891600	3022400	24075	4354	22819	150332;150333;150334;150335;150336;150337;150338	203271;203272;203273;203274;203275;203276;203277;203278;203279;203280;203281	203275			11	
IFVMATHGLLSSDAPR	0	Unmodified	1713.8872	0.88722543	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.8	4.84			1						5	1	2	3		72.007	65.055	2;3	1.9998E-22	35766	160513_QHF_FH_JSI10Kac_6	143.17	124.54			0.91808	0.78302	37.625	5	0	Median	0.91808	0.77215	NaN	1	0	Median	0.65317	0.78302	NaN	1	0	Median	1.4077	1.3351	48.887	3	0	Median	NaN	NaN	NaN	0	0	Median	1050600000	578750000	471830000	210940000	111010000	99932000	507700000	329750000	177950000	331950000	138000000	193950000	0	0	0	24076	402	22820	150339;150340;150341;150342;150343;150344	203282;203283;203284;203285;203286;203287	203287			6	
IFVMATHGLLSSDAPR	0	Oxidation (M)	1729.8821	0.88214006	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	10.8	6.37			2						3	2	2		1	61.1	55.048	3	0.00023651	45263	160511_QHF_FH_JSI9i_3	75.574	56.251			0.86635	0.73606	31.679	5	1	Median	0.84047	0.69539	8.0377	2	1	Median	0.6964	0.80961	28.536	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2593	1.3706	NaN	1	0	Median	173890000	113750000	60147000	72258000	44768000	27490000	79810000	58347000	21462000	0	0	0	21824000	10630000	11195000	24077	402	22820	150345;150346;150347;150348;150349	203288;203289;203290;203291;203292	203290		161	3	
IFVNDDRHVMAK	1	Unmodified	1443.7293	0.72926823	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	3	1	1	27.624	26.615	2;3;4	1.7151E-05	21922	160511_QHF_FH_JSI10i_3	95.401	86.58			0.78543	0.79255	49.891	8	2	Median	1.8114	1.4248	44.598	3	0	Plateau	0.69989	0.79711	64.828	3	1	Median	0.84814	0.78801	NaN	1	0	Median	0.49507	0.49842	NaN	1	1	Median	2263200000	1000400000	1262800000	808180000	332290000	475900000	613120000	311470000	301650000	710720000	276330000	434380000	131200000	80326000	50876000	24078	2325	22821	150350;150351;150352;150353;150354;150355;150356;150357	203293;203294;203295;203296;203297;203298;203299;203300;203301;203302;203303;203304;203305;203306	203298			14	
IFVNDDRHVMAK	1	Oxidation (M)	1459.7242	0.72418285	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		20.82	20.237	3;4	0.016702	22631	160511_QHF_FH_JSI11i_3	34.264	26.194			2.5787	2.3583	38.984	4	0	Linear	1.5927	1.3266	NaN	1	0	Median	1.0082	1.1642	NaN	1	0	Median	1.4944	1.4325	65.361	2	0	Median	NaN	NaN	NaN	0	0	Median	365870000	174170000	191700000	73374000	35499000	37875000	66517000	35149000	31368000	225980000	103520000	122450000	0	0	0	24079	2325	22821	150358;150359;150360;150361	203307;203308	203307		1916	2	
IFVNGTFIGGATDTHR	0	Unmodified	1704.8584	0.85836815	4977	Q9NS18	GLRX2	Glutaredoxin-2, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				58.195	56.65	3	0.00019302	46485	160511_QHF_FH_JSI9i_3	61.962	57.414			1.4747	1.1979	NaN	1	0	Median	1.4747	1.1979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39365000	16203000	23161000	39365000	16203000	23161000	0	0	0	0	0	0	0	0	0	24080	4977	22822	150362	203309	203309			1	
IFVNNELNELYTGLK	1	Unmodified	1765.9251	0.92505073	30	A6NJ78	METTL15	Probable methyltransferase-like protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.96	91.44	2	0.00088443	78918	160511_QHF_FH_JSI12i_2	66.595	39.923			0.6974	1.0216	30.493	3	2	Plateau	0.6974	0.59312	NaN	1	1	Median	0.54856	0.70155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0003	1.0718	NaN	1	0	Median	35831000	21007000	14823000	7307200	2863900	4443300	12313000	8691500	3621300	0	0	0	16210000	9452100	6758400	24081	30	22823	150363;150364;150365;150366	203310;203311;203312;203313	203310			4	
IFVNSNTDVAPFLR	0	Unmodified	1591.8358	0.83584179	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	80.267	79.696	2	0.00012186	70938	160511_QHF_FH_JSI10i_2	102.52	65.412			1.1612	0.79068	30.829	6	5	Linear	1.5349	1.3179	NaN	1	1	Median	1.0264	1.2714	NaN	1	0	Median	1.1612	1.1478	18.781	2	2	Median	0.896	0.94719	58.312	2	2	Median	264570000	141540000	123030000	20155000	8204900	11950000	29503000	15106000	14397000	99101000	50307000	48794000	115810000	67923000	47886000	24082	4096	22824	150367;150368;150369;150370;150371;150372;150373	203314;203315;203316;203317;203318;203319;203320;203321	203320			8	
IFVQGIIWDINSFDQWGVELGK	1	Unmodified	2563.3111	0.31111039	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.1	1.81				1	1				8	1	7	2		102.45	95.599	3	2.9889E-11	51977	160513_QHF_FH_JSI9Kac_6	98.543	84.381		+	0.88772	1.027	28.991	4	3	Median	1.2785	1.0759	NaN	1	0	Median	0.88772	1.0463	9.2017	2	2	Median	0.62499	0.59759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	545340000	281380000	263960000	128230000	49551000	78680000	414980000	230490000	184480000	2137600	1336000	801610	0	0	0	24083	856;75	22825	150374;150375;150376;150377;150378;150379;150380;150381;150382;150383	203322;203323;203324;203325;203326;203327;203328;203329;203330;203331	203324			10	
IFVYFITK	1	Unmodified	1029.5899	0.58990443	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	81.144	73.253	2	0.0073568	40923	160513_QHF_FH_JSI10Kac_6	73.26	53.474			0.78019	0.92781	19.775	3	1	Plateau	0.81482	0.7103	NaN	1	1	Median	0.78019	0.92781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9801	1.0451	NaN	1	0	Median	802380000	431110000	371270000	297710000	167840000	129870000	406060000	216670000	189390000	0	0	0	98614000	46608000	52006000	24084	3009	22826	150384;150385;150386;150387	203332;203333;203334;203335;203336	203335			5	
IFWEVFHELPLEK	1	Unmodified	1685.8817	0.88172935	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2	1	1	1	1	94.465	90.873	3	4.8155E-09	46525	160513_QHF_FH_JSI10Kac_6	111.83	96.195			0.9478	1.0188	18.353	4	1	Median	1.5313	1.3169	NaN	1	0	Median	0.92244	1.06	NaN	1	0	Median	0.90834	0.84861	NaN	1	1	Median	0.97386	0.97919	NaN	1	0	Median	338320000	170520000	167790000	53002000	24714000	28288000	114590000	56979000	57610000	49581000	27691000	21890000	121150000	61141000	60005000	24085	2884	22827	150388;150389;150390;150391	203337;203338;203339;203340;203341;203342;203343;203344	203343			8	
IFYALVQYTLPLELINQQNLTEWIEILK	1	Unmodified	3404.8636	0.86356668	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			10.4	6.86		2							3	2	3			104.05	99.904	3;4	2.0184E-135	57987	160513_QHF_FH_JSI10Kac_6	254.68	208.02			0.95319	1.0173	28.865	5	0	Median	1.5488	1.3604	46.627	2	0	Median	0.82118	1.0173	10.062	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1077600000	541650000	535930000	95943000	34174000	61769000	981640000	507480000	474160000	0	0	0	0	0	0	24086	686	22828	150392;150393;150394;150395;150396	203345;203346;203347;203348;203349;203350;203351;203352;203353;203354	203352			10	
IFYDMKVR	1	Acetyl (K)	1112.5689	0.56885141	1925	P60981	DSTN	Destrin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.41	52.711	2	0.02558	28466	160513_QHF_FH_JSI11Kac_6	59.245	42.469			0.32387	0.31094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32387	0.31094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123250000	97316000	25933000	0	0	0	0	0	0	123250000	97316000	25933000	0	0	0	24087	1925	22829	150397	203355	203355	1935		1	
IFYDMKVRK	2	Acetyl (K)	1240.6638	0.66381443	1925	P60981	DSTN	Destrin	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			49.869	41.257	3	0.056879	22776	160513_QHF_FH_JSI10Kac_6	35.541	26.109			1.3186	1.5686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3186	1.5686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22827000	8856500	13971000	0	0	0	22827000	8856500	13971000	0	0	0	0	0	0	24088	1925	22830	150398	203356	203356	1935		0	
IFYHPETTQLMILSASEATVK	1	Unmodified	2378.2192	0.21918384	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	2	3	3	2	86.514	82.944	3	3.6917E-37	40883	160513_QHF_FH_JSI9Kac_6	163.53	155.14			0.95224	0.87092	22.357	10	1	Median	0.95224	0.80001	2.3217	2	0	Median	0.70602	0.8121	10.244	3	0	Median	1.2285	1.1661	4.5292	3	1	Plateau	1.0608	1.0951	35.763	2	0	Median	1142200000	571100000	571150000	264130000	126620000	137520000	342590000	207520000	135070000	318780000	143180000	175600000	216750000	93780000	122970000	24089	1725	22831	150399;150400;150401;150402;150403;150404;150405;150406;150407;150408	203357;203358;203359;203360;203361;203362;203363;203364;203365;203366;203367;203368;203369;203370;203371;203372;203373;203374;203375;203376;203377;203378;203379;203380;203381	203371			25	
IFYHPETTQLMILSASEATVK	1	Oxidation (M)	2394.2141	0.21409846	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	79.624	70.588	3	0.011244	38270	160513_QHF_FH_JSI9Kac_6	39.288	24.827			1.17	1.1294	34.417	2	1	Median	1.0327	0.88547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3256	1.4407	NaN	1	1	Median	29558000	12079000	17478000	20565000	9099200	11466000	0	0	0	0	0	0	8992500	2980100	6012400	24090	1725	22831	150409;150410	203382;203383	203382		1413	1	
IFYINHNIK	1	Unmodified	1160.6342	0.63422886	1597	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.8	6.37			2						3	1		2	2	44.047	36.893	3	0.00078942	19409	160513_QHF_FH_JSI12Kac_6	69.423	51.559			0.93561	0.96922	28.899	4	0	Median	0.68671	0.59573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0266	1.0059	NaN	1	0	Median	0.99214	1.043	15.628	2	0	Median	222550000	89854000	132700000	10349000	6271800	4076700	0	0	0	13879000	7120300	6759200	198320000	76462000	121860000	24091	1597	22832	150411;150412;150413;150414;150415	203384;203385;203386;203387;203388;203389;203390	203390			6	
IFYIVEQR	0	Unmodified	1066.5811	0.58113065	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	61.77	51.969	2	0.0070225	27139	160513_QHF_FH_JSI12Kac_6	80.229	55.335			1.0468	1.0528	0.56898	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0691	1.0486	NaN	1	1	Median	1.0249	1.0571	NaN	1	1	Median	61479000	33514000	27965000	0	0	0	0	0	0	42423000	23771000	18653000	19056000	9743700	9312100	24092	1666	22833	150416;150417	203391;203392	203392			2	
IFYLFLTQEGNWK	1	Unmodified	1657.8504	0.85042922	658	O95219	SNX4	Sorting nexin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			90.594	84.873	2	1.845E-06	46238	160513_QHF_FH_JSI9Kac_6	112.13	87.276			1.0774	1.2394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0774	1.2394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58490000	28221000	30268000	0	0	0	58490000	28221000	30268000	0	0	0	0	0	0	24093	658	22834	150418;150419	203393;203394	203393			2	
IFYPEIEEVQALDDTER	0	Unmodified	2065.9844	0.9844161	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.591	9	9	1							4	4	7	4	88.379	87.863	2;3	2.8063E-98	80047	160511_QHF_FH_JSI11i_1	264.72	244.3			0.93074	0.90319	5.9045	16	10	Plateau	1.092	0.96967	2.3708	3	1	Plateau	0.74074	0.90104	5.3663	4	1	Median	0.92337	0.92362	3.4544	5	4	Median	0.94309	0.98226	4.9854	4	4	Median	1716100000	891440000	824650000	253950000	114360000	139590000	442530000	259220000	183320000	682110000	338860000	343260000	337490000	179000000	158480000	24094	1402	22835	150420;150421;150422;150423;150424;150425;150426;150427;150428;150429;150430;150431;150432;150433;150434;150435;150436;150437;150438	203395;203396;203397;203398;203399;203400;203401;203402;203403;203404;203405;203406;203407;203408;203409;203410;203411;203412;203413;203414;203415;203416;203417;203418;203419;203420;203421;203422;203423;203424	203397			30	
IFYPEIEEVQALDDTERGSGGFGSTGK	1	Unmodified	2901.3668	0.36684695	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	87.063	86.704	3;4	7.314E-26	76347	160511_QHF_FH_JSI9i_2	136.44	118.91			1.1155	1.0857	12.444	8	1	Median	1.0987	0.92998	NaN	1	0	Median	0.81373	0.99076	NaN	1	0	Median	1.2564	1.1848	9.8296	3	0	Median	1.0076	1.0446	8.4716	3	1	Median	774550000	394920000	379630000	71420000	31085000	40335000	122830000	63006000	59820000	396580000	208730000	187850000	183720000	92097000	91627000	24095	1402	22836	150439;150440;150441;150442;150443;150444;150445;150446	203425;203426;203427;203428;203429;203430;203431;203432;203433;203434;203435;203436;203437;203438;203439;203440;203441;203442	203432			18	
IFYPEIEEVQALDDTERGSGGFGSTGKN	1	Unmodified	3015.4098	0.40977439	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	86.403	85.992	3;4	8.4223E-42	76778	160511_QHF_FH_JSI11i_3	180.26	166.69			1.1615	1.1519	9.7283	10	2	Median	1.3233	1.1276	15.58	2	1	Median	0.96264	1.1698	7.3596	2	1	Median	1.1648	1.1902	4.2397	3	0	Median	0.94506	0.99731	13.575	3	0	Median	1575700000	812040000	763680000	309840000	151500000	158340000	390270000	231420000	158850000	678680000	323830000	354850000	196930000	105290000	91638000	24096	1402	22837	150447;150448;150449;150450;150451;150452;150453;150454;150455;150456	203443;203444;203445;203446;203447;203448;203449;203450;203451;203452;203453;203454;203455;203456;203457;203458	203444			16	
IFYPETTDIYDR	0	Unmodified	1531.7195	0.71947463	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.427	61.794	2	0.0080282	56390	160511_QHF_FH_JSI12i_1	50.452	26.847			0.94892	0.86104	10.022	4	1	Linear	1.1984	1.0155	NaN	1	0	Median	0.72952	0.86201	NaN	1	0	Median	1.0661	1.0351	NaN	1	1	Median	0.84459	0.86267	NaN	1	0	Median	295740000	148560000	147190000	65995000	31830000	34165000	73592000	36683000	36910000	89779000	43443000	46336000	66377000	36599000	29778000	24097	1600	22838	150457;150458;150459;150460	203459;203460	203460			2	
IFYPETTDIYDRK	1	Unmodified	1659.8144	0.81443765	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.19	3.36	1	8	6						1	3	5	4	4	54.92	53.494	2;3	3.8598E-06	46049	160511_QHF_FH_JSI12i_2	99.941	84.779			0.87853	0.95281	20.746	15	4	Median	1.1499	0.95281	16.38	3	1	Plateau	0.65287	0.77535	16.097	4	2	Median	1.0817	1.0856	17.562	4	0	Median	1.0243	1.0939	16.136	4	1	Median	6120400000	2827500000	3292900000	739050000	329890000	409160000	1282700000	638520000	644160000	2179000000	921870000	1257200000	1919700000	937230000	982420000	24098	1600	22839	150461;150462;150463;150464;150465;150466;150467;150468;150469;150470;150471;150472;150473;150474;150475;150476	203461;203462;203463;203464;203465;203466;203467;203468;203469;203470;203471;203472;203473;203474;203475;203476;203477;203478;203479;203480;203481;203482;203483;203484;203485;203486;203487;203488;203489;203490;203491;203492;203493;203494	203469			33	
IFYPETTDIYDRKNMPR	1	Acetyl (K)	2200.0623	0.062289266	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		73.197	63.814	3	0.025259	34582	160513_QHF_FH_JSI11Kac_6	51.606	42.076			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31646000	31646000	0	0	0	0	0	0	0	31646000	31646000	0	0	0	0	24099	1600	22840	150477	203495	203495	1625		1	
IFYQFLYNNNTR	0	Unmodified	1591.7783	0.77832691	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	76.167	68.144	2;3	1.7082E-16	36264	160513_QHF_FH_JSI9Kac_6	146.11	107.09			1.1472	1.1865	16.522	5	0	Median	1.1472	0.98824	NaN	1	0	Median	1.0616	1.2717	23.218	2	0	Median	1.3784	1.3311	NaN	1	0	Median	1.1041	1.1865	NaN	1	0	Median	556370000	266320000	290050000	109100000	57481000	51615000	316540000	151490000	165050000	67046000	25357000	41689000	63680000	31990000	31690000	24100	2606	22841	150478;150479;150480;150481;150482	203496;203497;203498;203499;203500;203501;203502;203503	203498			8	
IFYSGANIDELITFLIDHIQSSEDELK	1	Unmodified	3109.5496	0.54956234	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.02	96.298	3	1.3404E-84	56909	160513_QHF_FH_JSI10Kac_6	215.37	178.14			0.74884	0.89725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74884	0.89725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123140000	64982000	58162000	0	0	0	123140000	64982000	58162000	0	0	0	0	0	0	24101	3706	22842	150483	203504;203505	203505			2	
IFYVHAYTSK	1	Unmodified	1227.6288	0.62880913	4635	Q9H0K6	PUS7L	Pseudouridylate synthase 7 homolog-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	45.355	36.147	2;3	0.00066978	19777	160513_QHF_FH_JSI11Kac_6	57.019	51.921			1.1057	1.1629	18.093	7	0	Median	1.1502	0.98327	23.725	2	0	Median	0.83334	0.99861	14.125	2	0	Median	1.335	1.2959	12.932	2	0	Median	1.1057	1.1876	NaN	1	0	Median	208390000	111130000	97268000	59124000	30708000	28416000	73346000	43629000	29717000	52622000	22913000	29709000	23302000	13877000	9425500	24102	4635	22843	150484;150485;150486;150487;150488;150489;150490	203506;203507;203508;203509;203510;203511;203512;203513;203514;203515;203516;203517	203506			12	
IFYVNYLSELSEHVK	1	Unmodified	1839.9407	0.94070079	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	4	3	2	2	89.61	85.593	3	1.5565E-11	41029	160513_QHF_FH_JSI12Kac_6	127.71	108.16			0.89639	0.96489	22.458	9	0	Median	1.1398	0.97991	30.483	3	0	Plateau	0.79854	0.92009	9.0731	2	0	Median	0.93435	0.88774	11.785	2	0	Median	0.81729	0.84736	10.176	2	0	Median	2700800000	1321300000	1379500000	616270000	259280000	356980000	490350000	234160000	256190000	695220000	358130000	337090000	899010000	469760000	429250000	24103	2261	22844	150491;150492;150493;150494;150495;150496;150497;150498;150499;150500;150501	203518;203519;203520;203521;203522;203523;203524;203525;203526;203527;203528;203529;203530;203531;203532;203533;203534;203535;203536;203537	203536			19	
IGAAALWALIYNYQK	1	Unmodified	1693.9192	0.91917749	3347	Q86VV8	RTTN	Rotatin	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		96.523	87.124	3	0.015048	49530	160513_QHF_FH_JSI11Kac_6	43.03	32.396			1.3345	1.2791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3345	1.2791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111470000	52390000	59078000	0	0	0	0	0	0	111470000	52390000	59078000	0	0	0	24104	3347	22845	150502	203538	203538			1	
IGADEEIDDFK	1	Unmodified	1250.5667	0.56666238	3755	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	50.407	49.741	2	0.0058636	45176	160511_QHF_FH_JSI12i_1	54.584	43.221			1.0273	1.0523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0273	1.0523	NaN	1	1	Median	81209000	32458000	48751000	0	0	0	0	0	0	0	0	0	81209000	32458000	48751000	24105	3755	22846	150503;150504	203539;203540	203540			2	
IGAEVYHHLK	1	Unmodified	1165.6244	0.62439245	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	22.305	22.299	2;3;4	1.3867E-05	18169	160511_QHF_FH_JSI12i_3	77.662	66.905			0.98014	0.99316	39.806	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97892	0.92476	67.853	2	1	Median	0.92937	0.94618	25.372	3	1	Plateau	879780000	446400000	433390000	0	0	0	0	0	0	345330000	178360000	166970000	534450000	268040000	266410000	24106	1044	22847	150505;150506;150507;150508;150509	203541;203542;203543;203544;203545;203546;203547	203543			6	
IGAEVYHNLK	1	Unmodified	1142.6084	0.60840804	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.39	2	13	8					4	8	7	7	12	9	32.55	28.878	2;3	5.155E-10	24295	160511_QHF_FH_JSI11i_2	111.61	74.913			1.0046	1.0277	65.007	35	5	Median	1.3545	1.11	8.9261	7	0	Median	0.86142	1.0156	6.3989	7	0	Median	1.0639	1.0227	101.97	12	2	Median	0.77592	0.8405	55.371	9	3	Median	80523000000	41311000000	39212000000	12193000000	5366200000	6827000000	12524000000	6159400000	6364400000	31633000000	16368000000	15264000000	24173000000	13417000000	10756000000	24107	854	22848	150510;150511;150512;150513;150514;150515;150516;150517;150518;150519;150520;150521;150522;150523;150524;150525;150526;150527;150528;150529;150530;150531;150532;150533;150534;150535;150536;150537;150538;150539;150540;150541;150542;150543;150544	203548;203549;203550;203551;203552;203553;203554;203555;203556;203557;203558;203559;203560;203561;203562;203563;203564;203565;203566;203567;203568;203569;203570;203571;203572;203573;203574;203575;203576;203577;203578;203579;203580;203581;203582;203583;203584;203585;203586;203587;203588;203589;203590;203591;203592;203593;203594;203595;203596;203597;203598;203599;203600;203601;203602;203603;203604;203605;203606;203607;203608;203609;203610;203611;203612;203613;203614;203615;203616;203617;203618;203619;203620;203621;203622;203623;203624;203625;203626;203627;203628;203629;203630;203631;203632;203633;203634	203594			87	
IGAEVYHNLKNVIK	2	Acetyl (K)	1638.9093	0.90934108	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	74.795	66.096	2;3	4.23E-67	35797	160513_QHF_FH_JSI11Kac_6	218.01	181.43			0.47627	0.49879	87.036	7	0	Median	0.832	0.69654	NaN	1	0	Median	1.6682	1.9687	0.22071	2	0	Median	0.25693	0.24299	6.3864	2	0	Median	0.46703	0.49369	1.4523	2	0	Median	4030300000	2656400000	1373900000	199390000	102010000	97383000	1326600000	528490000	798120000	1876700000	1589200000	287540000	627570000	436710000	190860000	24108	854	22849	150545;150546;150547;150548;150549;150550;150551	203635;203636;203637;203638;203639;203640;203641;203642;203643;203644;203645;203646;203647;203648	203637	524		14	
IGAFGYMECSAK	1	Unmodified	1332.5842	0.58424348	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	6.45	2	3	2						3		4	4	2	56.338	53.308	2	1.8142E-05	45805	160511_QHF_FH_JSI12i_2	112.36	104.14			0.98051	1.0503	43.597	10	2	Median	NaN	NaN	NaN	0	0	Median	0.99112	1.1902	64.155	4	2	Median	0.97831	0.94238	16.834	4	0	Median	1.0881	1.1592	18.276	2	0	Median	1236700000	568860000	667830000	0	0	0	261240000	114430000	146810000	552300000	276680000	275620000	423140000	177740000	245400000	24109	1957	22850	150552;150553;150554;150555;150556;150557;150558;150559;150560;150561	203649;203650;203651;203652;203653;203654;203655;203656;203657;203658;203659;203660;203661	203651			13	
IGALEGYR	0	Unmodified	877.46577	0.46576654	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.346	31.023	2	0.026824	26200	160511_QHF_FH_JSI12i_2	51.787	21.119			0.74471	0.83577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74471	0.83577	NaN	1	1	Median	283040000	166240000	116810000	0	0	0	0	0	0	0	0	0	283040000	166240000	116810000	24110	375	22851	150562	203662	203662			1	
IGALLPYFVYVVSGVK	1	Unmodified	1723.9913	0.9912798	5732	Q9Y6J9	TAF6L	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	98.689	90.119	2;3	1.6108E-16	51269	160513_QHF_FH_JSI11Kac_6	142.1	113.14			1.0085	0.96824	69.7	5	4	Median	2.1553	1.8531	105.55	2	1	Median	0.89068	1.0524	NaN	1	1	Median	1.0085	0.96824	NaN	1	1	Median	0.60966	0.64249	NaN	1	1	Median	691560000	203910000	487650000	449320000	98951000	350370000	89014000	34247000	54767000	114510000	44904000	69608000	38717000	25806000	12910000	24111	5732	22852	150563;150564;150565;150566;150567;150568;150569	203663;203664;203665;203666;203667;203668;203669;203670	203664			8	
IGALQLQLSQLHEQCSSLEK	1	Unmodified	2281.1736	0.17363063	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			74.138	72.698	3	0.031108	60966	160511_QHF_FH_JSI10i_3	28.813	6.1603			0.99187	1.1496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99187	1.1496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10742000	4759600	5982500	0	0	0	10742000	4759600	5982500	0	0	0	0	0	0	24112	4255	22853	150570	203671	203671			1	
IGAMLAYTPLDEK	1	Unmodified	1420.7272	0.72720254	2601;5256	Q15014;Q9UBU8	MORF4L2;MORF4L1	Mortality factor 4-like protein 2;Mortality factor 4-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	73.008	72.13	2	8.8113E-05	64052	160511_QHF_FH_JSI10i_2	96.89	59.778			0.91576	1.0045	18.629	4	3	Median	0.92137	0.80791	NaN	1	1	Median	0.88064	1.0875	NaN	1	0	Median	0.91019	0.92783	NaN	1	1	Median	1.1157	1.2392	NaN	1	1	Median	109180000	57265000	51913000	17445000	9715600	7729800	29236000	14983000	14253000	34446000	18997000	15450000	28051000	13571000	14481000	24113	2601;5256	22854	150571;150572;150573;150574;150575	203672;203673;203674;203675;203676;203677	203677			6	
IGASFLQR	0	Unmodified	890.4974	0.49740102	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By matching		3	0			2							1		1		43.15	42.359	2	0.009583	34622	160511_QHF_FH_JSI9i_3	55.902	19.345			1.2102	1.0661	8.445	2	0	Median	1.2441	1.0043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1773	1.1317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1221400000	520710000	700690000	765460000	312580000	452890000	0	0	0	455930000	208130000	247800000	0	0	0	24114	773	22855	150576;150577	203678	203678			1	
IGASLADVDPMQLDSSVR	0	Unmodified	1872.9251	0.92512708	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	83.31	82.932	2	4.8999E-08	75604	160511_QHF_FH_JSI11i_1	120.87	109.66			0.77101	0.77283	37.043	5	5	Median	NaN	NaN	NaN	0	0	Median	0.50299	0.56241	NaN	1	1	Median	1.0966	1.0403	51.013	2	2	Median	0.86311	0.88152	18.61	2	2	Median	102000000	55379000	46617000	0	0	0	20209000	13677000	6531900	44942000	26003000	18939000	36845000	15698000	21147000	24115	3133	22856	150578;150579;150580;150581;150582	203679;203680;203681;203682;203683	203680			5	
IGASTLLSDIER	0	Unmodified	1273.6878	0.68778057	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	75.009	74.264	2	0.0084605	66012	160511_QHF_FH_JSI10i_2	71.221	58.168			0.79187	0.78356	25.526	5	0	Median	1.3321	1.1447	NaN	1	0	Median	0.79187	0.96366	NaN	1	0	Median	0.73629	0.72477	NaN	1	0	Median	0.65879	0.68115	19.807	2	0	Median	582880000	306210000	276660000	109800000	42051000	67744000	139360000	68609000	70750000	82470000	46118000	36352000	251250000	149440000	101820000	24116	5555	22857	150583;150584;150585;150586;150587	203684;203685	203684			1	
IGAVSAPIYNAHEK	1	Unmodified	1468.7674	0.76742787	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			7									3	4	37.277	37.184	2;3	1.995E-05	31547	160511_QHF_FH_JSI12i_3	114.7	95.381			0.99396	0.92071	30.212	7	7	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0516	1.0159	40.167	3	3	Median	0.86946	0.89153	15.476	4	4	Median	691770000	356150000	335620000	0	0	0	0	0	0	154870000	76242000	78630000	536900000	279910000	257000000	24117	15	22858	150588;150589;150590;150591;150592;150593;150594	203686;203687;203688;203689;203690;203691;203692	203690			7	
IGDEDVGR	0	Unmodified	859.40356	0.40356022	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.89	4	1				2	1			2	1	2	3	14.556	11.517	2	0.001083	10096	160511_QHF_FH_JSI10i_1	94.262	60.523			1.0518	1.0409	15.209	8	0	Median	1.2484	1.0571	0.86497	2	0	Median	0.87336	1.0265	NaN	1	0	Median	1.2855	1.2618	13.795	2	0	Median	0.8956	0.99033	13.326	3	0	Median	16104000000	7924500000	8179400000	3619200000	1572400000	2046900000	4648900000	2530200000	2118600000	4096600000	1844700000	2251900000	3739100000	1977100000	1762000000	24118	1224	22859	150595;150596;150597;150598;150599;150600;150601;150602	203693;203694;203695;203696;203697;203698;203699	203697			7	
IGDEDVGRVIFGLFGK	1	Unmodified	1720.9148	0.91482039	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			94.132	88.411	3	0.00098224	50806	160513_QHF_FH_JSI10Kac_6	76.358	57.762			4.1321	4.9698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.1321	4.9698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65159000	13088000	52071000	0	0	0	65159000	13088000	52071000	0	0	0	0	0	0	24119	1224	22860	150603	203700	203700			1	
IGDEYFTFITDCK	1	Unmodified	1607.7178	0.71776007	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		85.202	84.609	2	0.0022578	74473	160511_QHF_FH_JSI11i_2	68.536	45.3			1.0472	1.0477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0472	1.0477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53322000	27687000	25635000	0	0	0	0	0	0	53322000	27687000	25635000	0	0	0	24120	1655	22861	150604;150605;150606	203701;203702;203703	203703			3	
IGDFGLVTSLK	1	Unmodified	1148.6441	0.64412484	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	77.195	76.64	2	0.0012439	68177	160511_QHF_FH_JSI10i_2	65.056	38.672			0.97789	1.0467	24.843	7	3	Median	1.4695	1.2227	NaN	1	0	Median	0.88977	1.0866	NaN	1	0	Median	1.1485	1.1157	9.0383	2	1	Median	0.60983	0.65234	22.368	3	2	Plateau	555160000	273610000	281550000	68587000	33121000	35467000	83791000	40148000	43643000	207710000	91867000	115850000	195070000	108480000	86594000	24121	1162	22862	150607;150608;150609;150610;150611;150612;150613	203704;203705;203706;203707;203708;203709;203710;203711	203709			8	
IGDFIDVSEGPLIPR	0	Unmodified	1626.8617	0.86172219	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	1	3	92.932	92.417	2;3	1.7454E-06	81987	160511_QHF_FH_JSI10i_2	126.76	101.91			1.1659	1.2369	25.374	6	6	Median	NaN	NaN	NaN	0	0	Median	0.83741	1.0278	28.586	3	3	Plateau	1.4232	1.3561	NaN	1	1	Median	1.3037	1.3932	37.89	2	2	Median	152530000	80022000	72511000	0	0	0	105720000	54984000	50734000	16982000	7970500	9011100	29832000	17067000	12765000	24122	5128	22863	150614;150615;150616;150617;150618;150619;150620	203712;203713;203714;203715;203716;203717;203718	203717			7	
IGDGMNAYVAYK	1	Unmodified	1300.6122	0.61217279	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			49.693	48.738	2	0.043968	43032	160511_QHF_FH_JSI10i_2	45.158	33.555			1.6907	2.0874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6907	2.0874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61544000	17516000	44028000	0	0	0	61544000	17516000	44028000	0	0	0	0	0	0	24123	2448	22864	150621	203719	203719			1	
IGDLGLATLK	1	Unmodified	999.59645	0.59644637	4714	Q9H4A3;Q96J92	WNK1;WNK4	Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.344	63.441	2	0.00097395	55748	160511_QHF_FH_JSI9i_2	68.657	34.86			0.93246	1.0416	22.44	4	0	Median	1.6161	1.3479	NaN	1	0	Median	0.83788	1.034	NaN	1	0	Median	1.0377	1.0492	NaN	1	0	Median	0.70293	0.77848	NaN	1	0	Median	369570000	189680000	179890000	63037000	25498000	37539000	100590000	52852000	47740000	128160000	71552000	56604000	77786000	39776000	38010000	24124	4714	22865	150622;150623;150624;150625	203720;203721;203722;203723;203724	203721			5	
IGDLLVQQFSGENGER	0	Unmodified	1760.8693	0.86932676	3189	Q6ZSZ5	ARHGEF18	Rho guanine nucleotide exchange factor 18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	69.588	69.39	2	1.5813E-07	60147	160511_QHF_FH_JSI12i_3	140.31	115.46			1.0378	0.98396	19.275	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0378	0.98396	NaN	1	0	Median	0.90531	0.94915	27.1	2	2	Median	67012000	34818000	32194000	0	0	0	0	0	0	24026000	11278000	12747000	42986000	23539000	19447000	24125	3189	22866	150626;150627;150628	203725;203726;203727;203728;203729;203730;203731	203731			7	
IGDLQAFQGHGAGNLAGLK	1	Unmodified	1865.9748	0.97479489	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.86	2	9	12						4	5	7	7	8	67.159	65.198	2;3	6.5822E-118	57987	160511_QHF_FH_JSI11i_3	313.31	285.83			0.95898	1.0473	26.734	27	9	Median	1.7571	1.4861	20.031	5	0	Median	0.93357	1.0594	13.909	7	2	Median	1.083	1.0538	13.733	7	2	Median	0.66995	0.69937	21.072	8	5	Median	80106000000	37640000000	42466000000	7084300000	2797000000	4287400000	15486000000	7543200000	7942500000	28929000000	13101000000	15829000000	28607000000	14199000000	14408000000	24126	895	22867	150629;150630;150631;150632;150633;150634;150635;150636;150637;150638;150639;150640;150641;150642;150643;150644;150645;150646;150647;150648;150649;150650;150651;150652;150653;150654;150655	203732;203733;203734;203735;203736;203737;203738;203739;203740;203741;203742;203743;203744;203745;203746;203747;203748;203749;203750;203751;203752;203753;203754;203755;203756;203757;203758;203759;203760;203761;203762;203763;203764;203765;203766;203767;203768;203769;203770;203771;203772;203773;203774;203775;203776;203777;203778;203779;203780;203781;203782;203783;203784;203785;203786;203787;203788;203789;203790;203791;203792;203793;203794;203795;203796	203734			64	
IGDLQAFQGHGAGNLAGLKGR	1	Acetyl (K)	2121.1079	0.10793433	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	76.029	66.64	3	6.6097E-22	36285	160513_QHF_FH_JSI11Kac_6	142.85	126.36			0.24418	0.24981	23.745	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30216	0.29548	NaN	1	0	Median	0.19733	0.2112	NaN	1	1	Median	119810000	96143000	23667000	0	0	0	0	0	0	90083000	72024000	18059000	29727000	24119000	5608600	24127	895	22868	150656;150657	203797;203798	203797	637		2	
IGDPLLEDTR	0	Unmodified	1127.5823	0.58225287	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	3	2	1	49.631	48.931	2	0.00032358	44534	160511_QHF_FH_JSI12i_1	78.098	70.618			0.97996	1.05	19.807	6	2	Median	1.6653	1.3557	NaN	1	0	Median	0.92803	1.1268	6.82	2	2	Median	1.0346	1.0239	0.37881	2	0	Median	0.69589	0.74807	NaN	1	0	Median	2205900000	1067900000	1138000000	306100000	118590000	187500000	676810000	353850000	322960000	829350000	386900000	442450000	393620000	208580000	185040000	24128	1645	22869	150658;150659;150660;150661;150662;150663;150664	203799;203800;203801;203802;203803;203804;203805;203806;203807	203802			9	
IGDQEFDHLPALLEFYK	1	Unmodified	2034.0098	0.0098429899	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.24	101.13	3	3.0684E-08	88810	160511_QHF_FH_JSI11i_2	130.56	116.72			0.9118	1.0044	18.708	4	0	Median	1.3297	1.1673	NaN	1	0	Median	0.803	0.975	NaN	1	0	Median	1.0353	1.0346	NaN	1	0	Median	0.67421	0.74946	NaN	1	0	Median	711810000	350040000	361770000	99410000	41413000	57997000	199540000	97160000	102380000	239440000	113660000	125780000	173420000	97805000	75615000	24129	1583	22870	150665;150666;150667;150668	203808;203809;203810;203811;203812;203813	203811			6	
IGDSSQGDNNLQK	1	Unmodified	1374.6375	0.63753591	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.494	13.526	2	0.0048585	10848	160511_QHF_FH_JSI9i_1	54.198	32.734			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24130	2227	22871	150669	203814	203814			1	
IGDTPMVR	0	Unmodified	887.45349	0.4534873	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0			By MS/MS		2	0		1										1		24.992	24.639	2	0.026824	20530	160511_QHF_FH_JSI11i_2	51.787	29.165			1.3656	1.3538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3656	1.3538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	205540000	111860000	93677000	0	0	0	0	0	0	205540000	111860000	93677000	0	0	0	24131	957	22872	150670	203815	203815			1	
IGDTSVSYK	1	Unmodified	968.48148	0.48147619	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.736	22.202	2	0.0017027	19247	160511_QHF_FH_JSI10i_1	67.897	47.615			0.8424	0.9026	18.792	4	0	Median	1.4053	1.1637	NaN	1	0	Median	0.78221	0.93084	NaN	1	0	Median	0.90723	0.87521	NaN	1	0	Median	0.71186	0.73859	NaN	1	0	Median	2026300000	1101200000	925050000	516620000	254270000	262350000	420670000	221680000	198980000	562090000	288320000	273760000	526880000	336930000	189950000	24132	1180	22873	150671;150672;150673;150674	203816;203817;203818;203819	203819			4	
IGDVVGSSGANQQTSGK	1	Unmodified	1603.7802	0.7801774	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	24.044	21.013	2	1.2051E-07	18075	160511_QHF_FH_JSI11i_1	131.35	114.33			1.057	1.0718	24.867	6	0	Median	1.6239	1.3459	NaN	1	0	Median	0.79174	0.92374	NaN	1	0	Median	1.2202	1.1868	8.1759	2	0	Median	0.77681	0.83182	29.601	2	0	Median	510950000	248110000	262840000	141640000	56373000	85267000	106290000	50176000	56116000	122910000	57021000	65886000	140110000	84537000	55575000	24133	5495	22874	150675;150676;150677;150678;150679;150680	203820;203821;203822;203823;203824;203825;203826;203827;203828;203829	203820			10	
IGDVVLSIDGINAQGMTHLEAQNK	1	Unmodified	2522.2799	0.27988661	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	87.413	86.963	3	4.9509E-24	77260	160511_QHF_FH_JSI10i_2	142.45	122.01			0.95687	1.0129	27.013	6	1	Median	1.1548	1.0156	NaN	1	0	Median	0.83482	1.0103	NaN	1	0	Median	1.3748	1.3352	31.747	2	1	Median	0.75156	0.81537	14.012	2	0	Median	223800000	114490000	109320000	33191000	14313000	18879000	49215000	26845000	22370000	65848000	31896000	33952000	75550000	41434000	34116000	24134	4108	22875	150681;150682;150683;150684;150685;150686	203830;203831;203832;203833;203834;203835;203836;203837;203838;203839;203840;203841;203842	203840			13	
IGDVYGFLVEHYVR	0	Unmodified	1665.8515	0.85149185	4230	Q96RY7	IFT140	Intraflagellar transport protein 140 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		84.449	75.132	3	0.0012714	41596	160513_QHF_FH_JSI11Kac_6	55.885	51.171			1.2003	1.1412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2003	1.1412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49077000	22679000	26398000	0	0	0	0	0	0	49077000	22679000	26398000	0	0	0	24135	4230	22876	150687;150688	203843;203844	203844			2	
IGDWQHAQNIMDQMPPYYAASHK	1	Unmodified	2700.2213	0.22132588	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		75.764	75.764	3;4	0.00069113	67756	160511_QHF_FH_JSI11i_3	46.833	39.801			0.9721	0.90655	62.218	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9721	0.90655	62.218	2	1	Median	NaN	NaN	NaN	0	0	Median	111210000	42863000	68346000	0	0	0	0	0	0	111210000	42863000	68346000	0	0	0	24136	3675	22877	150689;150690	203845;203846;203847	203847			3	
IGDYVQQHGGVSLVEQLLQDPK	1	Unmodified	2422.2492	0.24923841	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	94.732	94.568	3	1.3502E-07	84338	160511_QHF_FH_JSI11i_3	101.75	87.915			0.92	0.94954	33.463	5	4	Median	NaN	NaN	NaN	0	0	Median	0.92	1.0839	NaN	1	0	Median	1.1151	1.024	10.675	2	2	Median	0.5778	0.58065	14.796	2	2	Median	1170900000	620140000	550800000	0	0	0	56549000	31112000	25437000	709820000	330880000	378950000	404570000	258150000	146420000	24137	1012	22878	150691;150692;150693;150694;150695	203848;203849;203850;203851;203852;203853;203854;203855;203856;203857;203858;203859;203860	203852			13	
IGEEFLTDLSQLK	1	Unmodified	1491.7821	0.78207489	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	93.068	92.608	2	0.0020217	79909	160511_QHF_FH_JSI12i_2	58.674	48.987			0.82347	0.84497	16.228	4	0	Median	0.95572	0.83851	NaN	1	0	Median	0.70952	0.85148	NaN	1	0	Median	1.1066	1.1089	NaN	1	0	Median	0.68536	0.75831	NaN	1	0	Median	93910000	52120000	41791000	18200000	9295800	8904300	26065000	17036000	9029100	28667000	14186000	14481000	20978000	11601000	9376500	24138	992	22879	150696;150697;150698;150699	203861;203862	203861			2	
IGEEQSAEDAEDGPPELLFIHGGHTAK	1	Unmodified	2846.3359	0.33588117	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.16	4.58		16	11						4	8	8	11	4	68.916	67.177	3;4	1.4127E-69	59453	160511_QHF_FH_JSI11i_3	211.78	203.71			0.98419	1.0158	15.262	30	9	Median	1.3408	1.0983	12.15	7	2	Median	0.83818	1.0138	16.889	8	2	Median	0.99802	0.98258	11.585	11	5	Median	0.79174	0.81209	12.027	4	0	Median	11338000000	5727900000	5609700000	1216800000	519970000	696880000	1711800000	926070000	785760000	7295700000	3641700000	3654000000	1113200000	640170000	473010000	24139	2741	22880	150700;150701;150702;150703;150704;150705;150706;150707;150708;150709;150710;150711;150712;150713;150714;150715;150716;150717;150718;150719;150720;150721;150722;150723;150724;150725;150726;150727;150728;150729;150730	203863;203864;203865;203866;203867;203868;203869;203870;203871;203872;203873;203874;203875;203876;203877;203878;203879;203880;203881;203882;203883;203884;203885;203886;203887;203888;203889;203890;203891;203892;203893;203894;203895;203896;203897;203898;203899;203900;203901;203902;203903;203904;203905;203906;203907;203908;203909;203910;203911;203912;203913;203914;203915;203916;203917;203918;203919;203920;203921;203922;203923	203865			60	
IGEEQSPEDAEDGPPELLFIHGGHTAK	1	Unmodified	2872.3515	0.35153123	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							3	2	4	2	68.285	67.828	3;4	1.2218E-31	59833	160511_QHF_FH_JSI11i_3	143.08	136.36			0.94416	0.95873	20.76	10	4	Median	1.2402	1.08	3.0046	2	1	Median	0.83954	1.0341	9.2049	2	0	Median	0.99577	0.94218	26.153	4	2	Median	0.7415	0.74305	2.7811	2	1	Median	2650800000	1272000000	1378800000	148130000	69051000	79077000	525060000	269910000	255150000	1668400000	759590000	908760000	309250000	173430000	135810000	24140	2283	22881	150731;150732;150733;150734;150735;150736;150737;150738;150739;150740;150741	203924;203925;203926;203927;203928;203929;203930;203931;203932;203933;203934;203935;203936;203937;203938;203939;203940;203941;203942;203943;203944	203924			21	
IGEGTYGTVFK	1	Unmodified	1170.5921	0.59208927	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	48.272	47.387	2	0.0019127	40721	160511_QHF_FH_JSI11i_2	60.102	51.19			0.88249	1.0032	32.896	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.65752	0.80998	NaN	1	0	Median	0.82248	0.84319	NaN	1	0	Median	0.46813	0.5069	29.143	2	1	Median	341480000	199190000	142290000	0	0	0	71108000	45128000	25980000	137470000	78193000	59276000	132910000	75872000	57037000	24141	2151	22882	150742;150743;150744;150745	203945;203946	203946			2	
IGEGTYGVVYK	1	Unmodified	1184.6077	0.60773933	850;1252	P06493;P24941;Q00526	CDK1;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.7	4	4	3					1		4	2	3	3	43.465	41.899	2	1.283E-10	35989	160511_QHF_FH_JSI11i_2	140.75	46.062			0.95016	0.93523	28.22	12	3	Median	1.151	0.95397	44.453	4	2	Median	0.73464	0.8941	7.1031	2	0	Median	1.0398	1.0575	8.6261	3	0	Median	0.89517	0.9051	22.018	3	1	Median	3305800000	1671300000	1634500000	526790000	216900000	309890000	751150000	442720000	308430000	1150100000	532200000	617920000	877750000	479470000	398280000	24142	850;1252	22883	150746;150747;150748;150749;150750;150751;150752;150753;150754;150755;150756;150757	203947;203948;203949;203950;203951;203952;203953;203954;203955;203956;203957;203958;203959;203960;203961;203962;203963	203960			17	
IGEGTYGVVYKGR	1	Acetyl (K)	1439.7409	0.74087877	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5		1	2	1	2	58.533	47.837	2;3	0.0017127	24303	160513_QHF_FH_JSI10Kac_5	76.228	19.823			0.64114	0.69919	34.52	5	0	Median	1.3436	1.0964	NaN	1	0	Median	0.93872	1.0954	NaN	1	0	Median	0.49174	0.48765	NaN	1	0	Median	0.6356	0.69779	0.28285	2	0	Median	56784000	35374000	21410000	5990000	2679800	3310100	12081000	6645200	5436200	26113000	18123000	7990200	12599000	7926100	4673100	24143	850	22884	150758;150759;150760;150761;150762;150763	203964;203965;203966;203967	203966	503		4	
IGEHMEEHGIK	1	Unmodified	1278.6027	0.60267073	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.17		7	7						3	3	2	6	6	16.513	14.817	2;3;4	9.0033E-07	11019	160511_QHF_FH_JSI12i_3	94.767	83.603			0.86463	0.87503	29.877	17	1	Median	1.3027	1.1219	21.744	3	0	Plateau	0.84923	1.0113	15.946	2	0	Median	0.85234	0.83864	10.841	6	0	Median	0.83428	0.83816	30.338	6	1	Median	3962700000	2055400000	1907300000	174420000	64129000	110290000	167070000	85872000	81199000	1434500000	746190000	688300000	2186700000	1159200000	1027500000	24144	2778	22885	150764;150765;150766;150767;150768;150769;150770;150771;150772;150773;150774;150775;150776;150777;150778;150779;150780	203968;203969;203970;203971;203972;203973;203974;203975;203976;203977;203978;203979;203980;203981;203982;203983;203984;203985;203986;203987;203988;203989	203984			22	
IGEHMEEHGIK	1	Oxidation (M)	1294.5976	0.59758535	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	12.742	12.784	2;3;4	0.0020279	5475	160511_QHF_FH_JSI12i_3	64.297	50.091			0.89831	0.83901	43.645	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.273	1.1855	3.6005	2	0	Median	0.58785	0.56197	11.388	2	0	Median	435220000	227650000	207560000	0	0	0	0	0	0	275750000	122000000	153740000	159470000	105650000	53819000	24145	2778	22885	150781;150782;150783;150784	203990;203991;203992	203992		2137	3	
IGEHMEEHGIKFIR	1	Acetyl (K)	1736.8668	0.86682434	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		58.366	48.644	3;4	2.4478E-05	26314	160513_QHF_FH_JSI11Kac_6	94.023	80.961			0.19681	0.19235	32.62	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19681	0.19235	32.62	2	1	Median	NaN	NaN	NaN	0	0	Median	27514000	22280000	5233800	0	0	0	0	0	0	27514000	22280000	5233800	0	0	0	24146	2778	22886	150785;150786	203993;203994	203993	2680		2	
IGEHTPSALAIMENANVLAR	0	Oxidation (M)	2122.0841	0.084087341	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.3		3	12						8	5	7	7	4	64.347	61.286	2;3	2.2362E-26	51615	160511_QHF_FH_JSI10i_3	182.7	163.67			0.9478	0.99355	20.167	19	4	Median	1.6557	1.3463	17.128	5	2	Median	0.91446	1.069	8.0766	5	0	Median	0.95658	0.91643	12.661	5	1	Median	0.67506	0.68834	20.996	4	1	Linear	3776500000	1804300000	1972300000	989480000	373750000	615730000	1293800000	654850000	638940000	975700000	497820000	477870000	517560000	277830000	239730000	24147	803	22887	150787;150788;150789;150790;150791;150792;150793;150794;150795;150796;150797;150798;150799;150800;150801;150802;150803;150804;150805;150806;150807;150808;150809	203995;203996;203997;203998;203999;204000;204001;204002;204003;204004;204005;204006;204007;204008;204009;204010;204011;204012;204013;204014;204015;204016;204017;204018;204019;204020;204021;204022;204023;204024;204025;204026;204027	204008		317	33	
IGEHTPSALAIMENANVLAR	0	Unmodified	2106.0892	0.089172718	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	4.86		9	13						4	8	7	6	5	83.827	81.729	2;3	2.2276E-160	69824	160511_QHF_FH_JSI10i_3	344.47	321.75			0.97498	0.99143	22.083	22	4	Median	1.3583	1.2985	8.3072	6	1	Linear	0.84799	1.0131	16.994	7	2	Median	0.95992	0.93242	11.538	5	0	Median	0.70739	0.77332	5.9509	4	1	Median	14267000000	7056500000	7210500000	3924700000	1508200000	2416500000	7941000000	4257800000	3683200000	1705200000	874080000	831100000	696180000	416450000	279730000	24148	803	22887	150810;150811;150812;150813;150814;150815;150816;150817;150818;150819;150820;150821;150822;150823;150824;150825;150826;150827;150828;150829;150830;150831;150832;150833;150834;150835	204028;204029;204030;204031;204032;204033;204034;204035;204036;204037;204038;204039;204040;204041;204042;204043;204044;204045;204046;204047;204048;204049;204050;204051;204052;204053;204054;204055;204056;204057;204058;204059;204060;204061;204062;204063;204064;204065;204066;204067;204068;204069;204070;204071;204072;204073;204074;204075;204076;204077;204078	204041			50	
IGEIATGSPVSTELGHVLIEISSTHK	1	Unmodified	2674.4178	0.4177603	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.07	101.02	4	2.2363E-58	90060	160511_QHF_FH_JSI11i_3	198.56	191.98			0.7553	0.90003	17.831	3	0	Median	NaN	NaN	NaN	0	0	Median	0.7553	0.90003	NaN	1	0	Median	1.0629	1.0133	NaN	1	0	Median	0.69188	0.71364	NaN	1	0	Median	828530000	445230000	383290000	0	0	0	92645000	50725000	41920000	293350000	119050000	174290000	442540000	275450000	167080000	24149	5310	22888	150836;150837;150838	204079;204080;204081	204079			3	
IGEKSLFTK	2	Acetyl (K)	1063.5914	0.59136099	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	61.411	50.633	2	0.052109	25750	160513_QHF_FH_JSI12Kac_5	43.282	24.499			0.88464	1.0645	18.65	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88464	1.0645	NaN	1	0	Median	0.86923	0.85193	NaN	1	0	Median	1.1081	1.234	NaN	1	0	Median	21708000	10668000	11040000	0	0	0	4840600	2720800	2119900	9780700	4114100	5666700	7086800	3832900	3253900	24150	901	22889	150839;150840;150841	204082	204082			1	
IGEQAEAMFGVGK	1	Unmodified	1335.6493	0.64928657	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	57.454	56.64	2	0.00097697	49085	160511_QHF_FH_JSI11i_2	77.288	56.341			0.5962	0.63583	25.501	4	2	Median	NaN	NaN	NaN	0	0	Median	0.4955	0.61183	NaN	1	0	Median	0.82784	0.8233	31.1	2	2	Median	0.53471	0.59259	NaN	1	0	Median	143520000	77848000	65672000	0	0	0	29141000	17496000	11645000	83757000	40181000	43576000	30622000	20171000	10451000	24151	2547	22890	150842;150843;150844;150845;150846	204083;204084;204085;204086;204087	204086			5	
IGETLIER	0	Unmodified	929.5182	0.51819605	5821				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.992	17.522	2	0.016568	15084	160511_QHF_FH_JSI12i_1	59.205	19.102	+		0.39901	0.42032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39901	0.42032	NaN	1	1	Median	224950000	146570000	78379000	0	0	0	0	0	0	0	0	0	224950000	146570000	78379000	24152	5821	22891	150847	204088	204088			1	
IGEVALAVIFDVASIILGSK	1	Unmodified	2014.1714	0.17142901	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.51	100.79	3	1.9328E-09	59758	160513_QHF_FH_JSI10Kac_6	95.5	85.969			0.39092	0.46074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.39092	0.46074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28774000	20798000	7976700	0	0	0	28774000	20798000	7976700	0	0	0	0	0	0	24153	5618	22892	150848	204089	204089			0	
IGEVDVEQHTLAK	1	Unmodified	1437.7464	0.74635808	1058	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	39.101	38.147	3	4.9807E-05	32489	160511_QHF_FH_JSI12i_2	79.875	67.314			0.82597	1.0836	15.802	3	2	Plateau	1.2788	1.0836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1124	1.129	NaN	1	1	Median	0.7651	0.8432	NaN	1	0	Median	237580000	125680000	111900000	51031000	22634000	28397000	0	0	0	110760000	57906000	52854000	75784000	45137000	30646000	24154	1058	22893	150849;150850;150851	204090;204091;204092	204090			3	
IGEWELIQESGVPLK	1	Unmodified	1696.9036	0.903587	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								3	3	2	2	90.788	90.235	2;3	5.0377E-09	81937	160511_QHF_FH_JSI10i_1	101.89	84.721			0.98273	1.0752	9.681	8	0	Median	1.3726	1.1566	1.8371	2	0	Median	0.90698	1.1098	5.2845	2	0	Median	1.0522	1.0565	3.2895	2	0	Median	0.82763	0.91865	3.2533	2	0	Median	520710000	284150000	236570000	89664000	40806000	48858000	164070000	95660000	68409000	174160000	97288000	76875000	92815000	50391000	42423000	24155	1573	22894	150852;150853;150854;150855;150856;150857;150858;150859;150860;150861	204093;204094;204095;204096;204097;204098;204099;204100;204101;204102;204103;204104;204105;204106;204107;204108;204109	204100			17	
IGFAEKVAAK	2	Acetyl (K)	1074.6073	0.6073454	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	2	3	2	58.303	48.175	2	1.0388E-05	26541	160513_QHF_FH_JSI10Kac_6	111.61	76.312			0.71261	0.77147	17.189	9	0	Median	1.2094	1.022	5.1424	2	0	Median	0.73007	0.86893	16.825	2	0	Median	0.71261	0.70524	8.6101	3	0	Median	0.65916	0.71502	0.79821	2	0	Median	511240000	281700000	229540000	80346000	37367000	42979000	132160000	70705000	61452000	191430000	106290000	85138000	107300000	67330000	39973000	24156	887	22895	150862;150863;150864;150865;150866;150867;150868;150869;150870	204110;204111;204112;204113;204114;204115;204116;204117;204118;204119	204119	624		10	
IGFDVVTLSGTR	0	Unmodified	1263.6823	0.68230126	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.574	74.284	2	0.013103	64477	160511_QHF_FH_JSI12i_3	44.639	28.437			0.87204	0.90309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87204	0.90309	NaN	1	0	Median	22856000	11425000	11431000	0	0	0	0	0	0	0	0	0	22856000	11425000	11431000	24157	4394	22896	150871	204120	204120			1	
IGFEAVMR	0	Unmodified	921.47422	0.47422274	700;701	O95487;O95486	SEC24B;SEC24A	Protein transport protein Sec24B;Protein transport protein Sec24A	no	no	0	0	0	0	By MS/MS				2	0		1								1				61.3	60.341	2	0.0030718	52976	160511_QHF_FH_JSI9i_2	75.311	0			0.88917	0.76592	NaN	1	0	Median	0.88917	0.76592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	190190000	91606000	98585000	190190000	91606000	98585000	0	0	0	0	0	0	0	0	0	24158	701;700	22897	150872	204121	204121			1	
IGFFNQQYAEQLR	0	Unmodified	1612.7998	0.79979063	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	73.507	72.672	2	1.3595E-15	60892	160511_QHF_FH_JSI10i_3	164.64	148.01			0.90735	0.96081	30.496	8	1	Median	1.6504	1.3636	3.6118	2	0	Median	0.79629	0.95357	0.26047	2	0	Median	1.0087	0.98807	3.1478	2	0	Median	0.59106	0.61324	4.1405	2	1	Median	1227400000	594220000	633190000	361690000	134370000	227320000	354680000	198010000	156670000	399030000	196620000	202410000	112020000	65221000	46799000	24159	3634	22898	150873;150874;150875;150876;150877;150878;150879;150880	204122;204123;204124;204125;204126;204127;204128;204129;204130;204131;204132;204133;204134	204126			13	
IGFLGLGLMGSGIVSNLLK	1	Unmodified	1888.0856	0.08559089	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	4	3	2	99.916	91.481	2;3	7.4791E-122	52061	160513_QHF_FH_JSI11Kac_6	295.78	244.5			0.70253	0.81097	26.771	8	8	Median	0.9981	0.85962	1.346	2	2	Median	0.70253	0.84091	2.9797	2	2	Median	0.61231	0.57522	46.427	2	2	Median	0.55988	0.59205	2.3201	2	2	Median	2725000000	1659000000	1066100000	683560000	368540000	315020000	1129700000	691190000	438500000	400800000	251840000	148960000	510960000	347390000	163570000	24160	2827	22899	150881;150882;150883;150884;150885;150886;150887;150888;150889;150890;150891;150892	204135;204136;204137;204138;204139;204140;204141;204142;204143;204144;204145;204146	204136			12	
IGFPWSEIR	0	Unmodified	1103.5764	0.57637963	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	3	4	4	3	81.232	78.7	2	1.5549E-05	66516	160511_QHF_FH_JSI9i_3	109.01	74.188			0.97674	1.0617	27.258	12	5	Median	1.6225	1.3476	11.519	2	0	Median	0.96584	1.0667	11.842	3	2	Median	1.1344	1.0972	7.5976	4	2	Median	0.655	0.65763	8.5989	3	1	Median	28031000000	13933000000	14098000000	3548100000	1278800000	2269300000	4716700000	2398600000	2318100000	14069000000	6648400000	7420400000	5697700000	3607100000	2090700000	24161	1073;1426;1270	22900	150893;150894;150895;150896;150897;150898;150899;150900;150901;150902;150903;150904;150905;150906	204147;204148;204149;204150;204151;204152;204153;204154;204155;204156;204157;204158;204159;204160;204161;204162;204163;204164;204165;204166;204167;204168;204169;204170;204171;204172;204173;204174;204175	204159			29	
IGFQSLIQK	1	Unmodified	1032.5968	0.59678072	4590	Q9C0I1	MTMR12	Myotubularin-related protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	65.157	64.062	2	0.0093639	53668	160511_QHF_FH_JSI10i_3	51.193	31.556			1.0741	1.0972	2.8271	3	1	Median	1.4111	1.1461	NaN	1	0	Median	0.95576	1.0972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0741	1.087	NaN	1	1	Median	355210000	157100000	198100000	78745000	29211000	49533000	99310000	49786000	49524000	0	0	0	177150000	78106000	99047000	24162	4590	22901	150907;150908;150909	204176;204177;204178	204176			3	
IGFSGPK	1	Unmodified	704.38573	0.38572531	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	25.5	24.832	2	0.035999	20603	160511_QHF_FH_JSI12i_3	49.358	25.386			1.3956	1.2699	31.582	4	0	Median	1.8616	1.5214	NaN	1	0	Median	0.86227	1.0121	NaN	1	0	Median	2.1549	1.9722	NaN	1	0	Median	1.0462	1.0599	NaN	1	0	Median	1070400000	523830000	546550000	37613000	10760000	26853000	208490000	102080000	106410000	93072000	29972000	63099000	731200000	381010000	350190000	24163	2286	22902	150910;150911;150912;150913	204179;204180	204179			2	
IGFVGFPSVGK	1	Unmodified	1106.6124	0.61243078	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	2	1	77.236	76.49	2	5.7279E-07	64333	160511_QHF_FH_JSI10i_3	113.62	83.455			0.75927	0.68574	38.429	6	2	Median	1.0932	0.92242	48.233	2	1	Median	0.80622	0.9382	NaN	1	0	Median	0.60286	0.58157	29.604	2	1	Median	0.47579	0.49911	NaN	1	0	Median	1704500000	883070000	821430000	359350000	129150000	230200000	330290000	170920000	159370000	467030000	237030000	229990000	547840000	345970000	201870000	24164	5505	22903	150914;150915;150916;150917;150918;150919	204181;204182;204183;204184;204185;204186;204187;204188;204189;204190;204191;204192;204193;204194;204195	204186			15	
IGGAQNR	0	Unmodified	714.37729	0.37728589	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3							5	3	2	3	1.8268	1.4958	2	0.019234	183	160511_QHF_FH_JSI11i_3	58.661	33.662			1.18	1.1758	21.686	13	0	Median	1.4328	1.1854	11.741	5	0	Median	0.92534	1.043	19.58	3	0	Plateau	1.0205	0.99971	4.3732	2	0	Median	0.74403	0.79519	34.098	3	0	Plateau	19088000000	8809100000	10279000000	5244400000	2033600000	3210800000	6862100000	3415600000	3446500000	5159900000	2377600000	2782200000	1822100000	982260000	839810000	24165	1048	22904	150920;150921;150922;150923;150924;150925;150926;150927;150928;150929;150930;150931;150932	204196;204197;204198;204199;204200;204201;204202;204203;204204	204196			9	
IGGDAATTVNNSTPDFGFGGQK	1	Unmodified	2153.0025	0.0025257806	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.905	62.27	2;3	1.5045E-57	56441	160511_QHF_FH_JSI11i_1	268.61	238.55			0.97284	1.0306	12.008	8	0	Median	1.3009	1.0805	7.3178	2	0	Median	0.90537	1.0688	4.5245	2	0	Median	1.0795	1.0546	8.0931	2	0	Median	0.80869	0.84061	2.1709	2	0	Median	3139400000	1425100000	1714200000	953810000	389410000	564400000	673390000	338500000	334890000	833740000	372350000	461390000	678420000	324850000	353570000	24166	3911	22905	150933;150934;150935;150936;150937;150938;150939;150940	204205;204206;204207;204208;204209;204210;204211;204212;204213;204214;204215;204216;204217;204218;204219;204220;204221;204222;204223;204224	204208			20	
IGGDAGTSLNSNDYGYGGQK	1	Unmodified	1972.8763	0.87626263	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	43.143	40.775	2;3	1.7564E-54	36475	160511_QHF_FH_JSI10i_1	220.21	207.01			1.0867	1.09	12.908	10	4	Median	1.4033	1.1462	6.6424	2	0	Median	0.97321	1.1488	17.479	2	1	Median	1.0692	1.0864	11.468	3	1	Median	0.89619	0.94406	17.914	3	2	Plateau	3607000000	1701500000	1905500000	853790000	306620000	547170000	821640000	409320000	412320000	807560000	343630000	463930000	1124000000	641930000	482100000	24167	3966	22906	150941;150942;150943;150944;150945;150946;150947;150948;150949;150950	204225;204226;204227;204228;204229;204230;204231;204232;204233;204234;204235;204236;204237;204238;204239;204240;204241;204242	204235			18	
IGGGDTTEHIQTHFESK	1	Unmodified	1855.8701	0.87005504	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	30.544	30.511	3;4	7.5337E-05	25665	160511_QHF_FH_JSI12i_3	67.274	57.486			0.85947	0.82942	9.9679	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89833	0.84176	12.332	2	0	Median	0.82328	0.82032	11.805	2	1	Median	215890000	110860000	105020000	0	0	0	0	0	0	109740000	54072000	55669000	106140000	56791000	49353000	24168	167	22907	150951;150952;150953;150954	204243;204244;204245;204246;204247	204246			4	
IGGGIDVPVPR	0	Unmodified	1078.6135	0.61349341	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	3	2	3	56.808	55.99	2	2.1411E-09	50510	160511_QHF_FH_JSI10i_1	131.06	97.265			0.95564	1.0502	18.012	10	0	Median	1.6391	1.3697	21.515	2	0	Median	0.82286	1.0218	11.73	3	0	Median	1.0746	1.0746	1.5188	2	0	Median	0.87953	0.8985	9.3066	3	0	Median	2766400000	1364300000	1402000000	495800000	186140000	309660000	724490000	390020000	334480000	871340000	416810000	454520000	674720000	371340000	303380000	24169	3911	22908	150955;150956;150957;150958;150959;150960;150961;150962;150963;150964	204248;204249;204250;204251;204252;204253;204254;204255;204256;204257;204258;204259;204260;204261;204262;204263	204256			16	
IGGHGPTLK	1	Unmodified	878.4974	0.49740102	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	12.125	11.758	2;3	0.00023828	9366	160511_QHF_FH_JSI10i_3	62.823	36.221			0.99824	1.0319	28.748	8	0	Median	1.4615	1.1666	6.8353	2	0	Median	1.0449	1.2433	3.5472	2	0	Median	0.92464	0.87361	13.038	2	0	Median	0.65834	0.66419	23.824	2	0	Median	2010600000	1025900000	984650000	564580000	176750000	387830000	406560000	201130000	205430000	410490000	233530000	176960000	628920000	414480000	214430000	24170	2778	22909	150965;150966;150967;150968;150969;150970;150971;150972	204264;204265;204266;204267;204268;204269;204270;204271;204272	204267			9	
IGGIFAFK	1	Unmodified	851.49052	0.49052473	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	6.1		2	5						3	3	1	3	3	69.545	66.305	1;2	0.017484	57698	160511_QHF_FH_JSI12i_3	55.441	30.443			1.0891	1.0236	19.315	10	2	Median	1.2838	1.0318	20.288	3	1	Median	0.86444	1.0052	NaN	1	0	Median	1.0826	1.0179	5.9261	3	0	Plateau	0.82939	0.84684	32.148	3	1	Plateau	5000900000	2256700000	2744200000	1391400000	628330000	763030000	1193600000	647750000	545830000	1079800000	426760000	653090000	1336100000	553840000	782290000	24171	1207	22910	150973;150974;150975;150976;150977;150978;150979;150980;150981;150982	204273;204274;204275;204276;204277;204278;204279;204280;204281;204282;204283;204284;204285;204286;204287;204288	204286			16	
IGGIGTVPVGR	0	Unmodified	1024.6029	0.60292873	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.41	4	5	5			2	3	4	4	5	7	8	7	49.91	44.318	2;3	3.9186E-09	22640	160513_QHF_FH_JSI12Kac_5	120.15	70.44			0.91975	1.0155	27.298	25	9	Median	1.6089	1.3343	14.752	4	1	Median	0.88168	0.96398	13.807	7	2	Median	1.0482	1.0295	31.639	8	4	Median	0.63901	0.83952	16.792	6	2	Linear	98337000000	48857000000	49480000000	9701200000	3294200000	6407000000	29739000000	14544000000	15194000000	31938000000	15544000000	16395000000	26959000000	15475000000	11484000000	24172	2072;2231	22911	150983;150984;150985;150986;150987;150988;150989;150990;150991;150992;150993;150994;150995;150996;150997;150998;150999;151000;151001;151002;151003;151004;151005;151006;151007;151008;151009	204289;204290;204291;204292;204293;204294;204295;204296;204297;204298;204299;204300;204301;204302;204303;204304;204305;204306;204307;204308;204309;204310;204311;204312;204313;204314;204315;204316;204317;204318;204319;204320;204321;204322;204323;204324;204325;204326;204327;204328;204329;204330;204331;204332;204333	204323			45	
IGGIGTVPVGRVETGVLK	1	Unmodified	1751.0305	0.030518852	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.291	66.811	3	0.011578	54666	160511_QHF_FH_JSI9i_3	40.844	21.633			0.29734	0.33906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29734	0.33906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127950000	97185000	30761000	0	0	0	127950000	97185000	30761000	0	0	0	0	0	0	24173	2072	22912	151010;151011	204334;204335	204335			2	
IGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVK	2	Unmodified	3520.9691	0.96911115	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	2		By MS/MS			9.5	6.5			1						1		2			94.297	91.353	4	2.3509E-16	83238	160511_QHF_FH_JSI10i_3	80.841	76.219			0.22358	0.26013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.22358	0.26013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126090000	116620000	9468100	0	0	0	126090000	116620000	9468100	0	0	0	0	0	0	24174	2072	22913	151012;151013	204336;204337;204338	204336			3	
IGGILANELSVDEAALHAAVIAINEAIDR	0	Unmodified	2957.5822	0.58219987	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			100.89	95.168	3;4	1.0762E-34	56111	160513_QHF_FH_JSI10Kac_6	143.01	136.57			0.80495	0.96118	9.9058	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80495	0.96118	9.9058	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	465390000	240670000	224720000	0	0	0	465390000	240670000	224720000	0	0	0	0	0	0	24175	1600	22914	151014;151015	204339;204340	204339			2	
IGGISGIFK	1	Unmodified	890.52255	0.52255314	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	61.482	60.775	2	0.0036856	52318	160511_QHF_FH_JSI12i_3	59.245	32.643			0.96541	1.0284	18.074	7	0	Median	1.2833	1.056	NaN	1	0	Median	0.90084	1.0816	7.1311	2	0	Median	0.94859	0.93244	1.1387	2	0	Median	1.0161	1.058	40.521	2	0	Median	1295200000	648620000	646600000	331940000	138500000	193430000	264400000	140560000	123840000	268150000	139770000	128390000	430720000	229780000	200940000	24176	5360	22915	151016;151017;151018;151019;151020;151021;151022	204341;204342;204343;204344;204345;204346	204346			6	
IGGKGTAR	1	Acetyl (K)	800.45045	0.45045083	1172;4146	Q96K17;P20290	BTF3L4;BTF3	Transcription factor BTF3 homolog 4;Transcription factor BTF3	no	no	1	0	0	1		By MS/MS			15	0								1			1			10.014	0.68444	2	0.018934	3500	160513_QHF_FH_JSI10Kac_5	62.659	11.086			0.6801	0.77971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6801	0.77971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151110000	94605000	56509000	0	0	0	151110000	94605000	56509000	0	0	0	0	0	0	24177	4146;1172	22916	151023	204347	204347	1030		1	
IGGNEGIDVPIPR	0	Unmodified	1335.7147	0.71466402	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								4	3	3	3	63.627	62.891	2;3	1.1322E-05	55840	160511_QHF_FH_JSI9i_1	124.12	110.12			0.94852	0.99558	19.475	13	0	Median	1.3908	1.1651	13.578	4	0	Median	0.769	0.91297	19.974	3	0	Median	1.0343	0.99558	8.9205	3	0	Median	0.79512	0.84355	5.5443	3	0	Median	2600900000	1329300000	1271700000	566380000	238520000	327870000	485820000	271240000	214570000	924170000	455090000	469080000	624550000	364400000	260150000	24178	3966	22917	151024;151025;151026;151027;151028;151029;151030;151031;151032;151033;151034;151035;151036	204348;204349;204350;204351;204352;204353;204354;204355;204356;204357;204358;204359;204360;204361;204362;204363;204364;204365;204366;204367;204368	204363			21	
IGGQVHAVQALVQLFLER	0	Unmodified	1977.116	0.11597982	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.174	90.454	3	1.7356E-17	52334	160513_QHF_FH_JSI10Kac_6	141.22	123.73			0.66259	0.78166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66259	0.78166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201270000	108210000	93061000	0	0	0	201270000	108210000	93061000	0	0	0	0	0	0	24179	3282	22918	151037	204369	204369			1	
IGGSTDTGK	1	Unmodified	834.40831	0.40831125	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	6.0636	-1.0884	2	0.052286	2153	160513_QHF_FH_JSI12Kac_3	37.549	16.994			0.84884	0.9422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84884	0.9422	NaN	1	0	Median	14912000	8458800	6453500	0	0	0	0	0	0	0	0	0	14912000	8458800	6453500	24180	1602	22919	151038	204370	204370			1	
IGGVQQDTILAEGLHFR	0	Unmodified	1852.9795	0.97954591	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.23		9	9						4	7	6	6	3	77.798	75.47	2;3	9.4339E-41	68442	160511_QHF_FH_JSI11i_3	198.15	170			0.95157	1.0257	20.483	20	8	Median	1.4358	1.2092	13.857	6	3	Median	0.85711	1.0332	9.6231	5	0	Median	1.0008	0.98358	13.905	6	4	Median	0.652	0.70416	9.3226	3	1	Median	10895000000	5295500000	5600000000	2072400000	852690000	1219700000	4485700000	2313500000	2172200000	3985200000	1924900000	2060300000	352170000	204360000	147800000	24181	4296	22920	151039;151040;151041;151042;151043;151044;151045;151046;151047;151048;151049;151050;151051;151052;151053;151054;151055;151056;151057;151058;151059;151060	204371;204372;204373;204374;204375;204376;204377;204378;204379;204380;204381;204382;204383;204384;204385;204386;204387;204388;204389;204390;204391;204392;204393;204394;204395;204396;204397;204398;204399;204400;204401;204402;204403;204404;204405	204371			35	
IGGVTER	0	Unmodified	730.39735	0.39735263	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			10.139	9.6392	2	0.031522	7560	160511_QHF_FH_JSI10i_2	51.572	16.68			0.77009	0.94749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77009	0.94749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	876340000	465690000	410650000	0	0	0	876340000	465690000	410650000	0	0	0	0	0	0	24182	887	22921	151061	204406	204406			1	
IGHFFFWHLK	1	Unmodified	1330.6975	0.69749782	1533	P42336	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	78.532	70.024	3;4	7.7389E-06	37486	160513_QHF_FH_JSI9Kac_6	102.61	93.42			0.89491	0.93071	30.863	9	0	Median	1.2376	1.075	9.4868	2	0	Median	0.75481	0.90212	4.413	2	0	Median	1.1377	1.0737	28.267	3	0	Plateau	0.57208	0.59806	6.2162	2	0	Median	1844000000	1011900000	832040000	177250000	91151000	86099000	1135200000	643380000	491860000	360010000	169190000	190830000	171470000	108210000	63254000	24183	1533	22922	151062;151063;151064;151065;151066;151067;151068;151069;151070	204407;204408;204409;204410;204411;204412;204413;204414;204415;204416;204417;204418;204419;204420;204421	204411			15	
IGHFQLMQGK	1	Unmodified	1157.6015	0.60154852	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	40.936	40.007	2;3	4.2449E-06	33717	160511_QHF_FH_JSI10i_3	83.998	83.998			0.93023	1.0756	46.272	7	2	Median	1.476	1.1785	1.3383	2	0	Median	0.91871	1.0702	0.71098	2	0	Median	1.5698	1.482	NaN	1	0	Median	0.46136	0.47231	1.1181	2	2	Median	924870000	468260000	456610000	270450000	103860000	166590000	246620000	137440000	109180000	192820000	96452000	96371000	214970000	130510000	84465000	24184	1277	22923	151071;151072;151073;151074;151075;151076;151077	204422;204423;204424;204425;204426;204427;204428;204429;204430;204431;204432	204424			11	
IGHFQLMQGK	1	Oxidation (M)	1173.5965	0.59646314	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	29.326	28.4	3	0.0011818	23231	160511_QHF_FH_JSI9i_3	55.461	48.802			0.94548	0.8369	43.608	3	1	Plateau	1.0551	0.8369	NaN	1	0	Median	0.58317	0.65331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.34368	0.3584	NaN	1	1	Median	70103000	40054000	30050000	30039000	16171000	13867000	22348000	12442000	9905500	0	0	0	17717000	11440000	6277000	24185	1277	22923	151078;151079;151080	204433;204434;204435;204436	204433		910	4	
IGHGGSALVFLLPMEESYINFLAINQK	1	Unmodified	2960.547	0.54700034	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		98.264	88.991	3	9.5047E-34	51085	160513_QHF_FH_JSI9Kac_6	138.62	126.88			1.1666	1.0688	6.0427	2	1	Median	1.2726	1.1155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0694	1.0241	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	203110000	82245000	120870000	77771000	40086000	37685000	0	0	0	125340000	42160000	83181000	0	0	0	24186	3670	22924	151081;151082	204437;204438	204438			2	
IGHGGTLDSAAR	0	Unmodified	1153.584	0.5839842	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	11.508	11.043	3	0.028403	8691	160511_QHF_FH_JSI10i_3	26.483	19.824			1.1896	1.3706	60.446	3	1	Median	1.9943	1.6249	NaN	1	0	Median	1.1896	1.3706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53048	0.52931	NaN	1	1	Median	138290000	66964000	71328000	17855000	5372100	12483000	58925000	26540000	32385000	0	0	0	61511000	35052000	26460000	24187	3798	22925	151083;151084;151085	204439;204440	204439			2	
IGHLLPEEQVYLNQQSGTIR	0	Unmodified	2294.2019	0.20189429	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	66.058	65.684	3	6.5032E-06	56759	160511_QHF_FH_JSI12i_3	74.776	66.588			0.78365	0.69501	21.209	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.56285	0.69501	NaN	1	1	Median	1.0055	0.92998	NaN	1	0	Median	0.61076	0.61552	NaN	1	0	Median	171230000	82994000	88234000	0	0	0	28672000	16599000	12073000	87536000	42572000	44964000	55019000	23822000	31197000	24188	641	22926	151086;151087;151088;151089	204441;204442;204443;204444	204444			4	
IGHPAPNFK	1	Unmodified	979.52395	0.52395013	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		8	8						8	6	6	6	6	21.876	18.62	2;3	2.2076E-05	14919	160511_QHF_FH_JSI9i_3	108.24	85.219			0.86879	0.95109	33.399	24	0	Median	1.6257	1.4032	10.596	6	0	Median	0.85895	0.98421	10.584	6	0	Median	0.95286	0.9248	6.6944	6	0	Median	0.54638	0.5775	5.4771	6	0	Median	91426000000	41077000000	50349000000	19064000000	6724600000	12340000000	23166000000	11583000000	11583000000	21052000000	8216200000	12836000000	28144000000	14553000000	13592000000	24189	2249	22927	151090;151091;151092;151093;151094;151095;151096;151097;151098;151099;151100;151101;151102;151103;151104;151105;151106;151107;151108;151109;151110;151111;151112;151113	204445;204446;204447;204448;204449;204450;204451;204452;204453;204454;204455;204456;204457;204458;204459;204460;204461;204462;204463;204464;204465;204466;204467;204468;204469;204470;204471;204472;204473;204474;204475;204476;204477;204478;204479;204480;204481;204482;204483;204484;204485;204486;204487;204488;204489;204490;204491;204492;204493;204494;204495;204496;204497;204498;204499;204500;204501;204502;204503;204504;204505;204506;204507;204508;204509;204510	204478			66	
IGHPAPNFKATAVMPDGQFK	2	Acetyl (K);Oxidation (M)	2183.0834	0.083359059	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	66.65	57.01	3	4.6814E-13	30780	160513_QHF_FH_JSI11Kac_6	121.26	111.5			0.33559	0.31508	15.768	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.22364	0.25691	NaN	1	1	Median	0.33559	0.31508	NaN	1	0	Median	0.32516	0.35036	NaN	1	0	Median	108490000	85054000	23439000	0	0	0	15295000	13202000	2093400	65529000	51967000	13562000	27669000	19886000	7783300	24190	2249	22928	151114;151115;151116;151117	204511;204512;204513;204514;204515	204511	2348	1861	5	
IGHPAPNFKATAVMPDGQFK	2	Acetyl (K)	2167.0884	0.088444437	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	73.802	64.961	3;4	1.3095E-18	35900	160513_QHF_FH_JSI10Kac_6	137.61	121.38			0.40578	0.38482	62.965	5	0	Median	1.0967	0.95016	NaN	1	0	Median	1.0504	1.2681	NaN	1	0	Median	0.37858	0.3615	8.8408	2	0	Median	0.32371	0.34051	NaN	1	0	Median	985310000	603890000	381420000	67859000	32991000	34868000	281800000	121550000	160260000	529220000	371780000	157440000	106430000	77567000	28861000	24191	2249	22928	151118;151119;151120;151121;151122	204516;204517;204518;204519;204520;204521;204522;204523;204524	204524	2348		9	
IGHYILGDTLGVGTFGK	1	Unmodified	1746.9305	0.93047046	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			7							2	2	1	2	78.772	77.908	2;3	1.2539E-08	64133	160511_QHF_FH_JSI9i_3	111.64	99.498			0.78947	0.90604	29.12	7	0	Median	1.3952	1.1638	2.4929	2	0	Median	0.74563	0.86208	7.0332	2	0	Median	1.0615	1.0034	NaN	1	0	Median	0.59219	0.59217	13.395	2	0	Median	625450000	284930000	340520000	100160000	35268000	64891000	109240000	56284000	52952000	163650000	57334000	106320000	252400000	136050000	116360000	24192	2356	22929	151123;151124;151125;151126;151127;151128;151129	204525;204526;204527;204528;204529;204530;204531;204532	204530			8	
IGHYVLGDTLGVGTFGK	1	Unmodified	1732.9148	0.91482039	1826	P54646	PRKAA2	5'-AMP-activated protein kinase catalytic subunit alpha-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.027	73.737	3	0.0011154	64013	160511_QHF_FH_JSI12i_3	58.83	48.362			0.32524	0.34804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32524	0.34804	NaN	1	1	Median	12187000	9050200	3136600	0	0	0	0	0	0	0	0	0	12187000	9050200	3136600	24193	1826	22930	151130	204533	204533			1	
IGIARPEEEFHVPLDSYR	0	Unmodified	2127.0749	0.074902863	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			70.499	69.036	4	0.035947	57979	160511_QHF_FH_JSI10i_3	30.152	20.364			1.1723	1.3347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1723	1.3347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13794000	6304500	7489100	0	0	0	13794000	6304500	7489100	0	0	0	0	0	0	24194	3196	22931	151131	204534	204534			1	
IGIEIIK	1	Unmodified	784.50584	0.50584045	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.6	2	4	2				2	4	4	3	5	6	4	63.174	57.294	2	0.011062	50460	160511_QHF_FH_JSI11i_3	72.138	18.584			0.99736	1.0064	51.763	18	1	Median	1.165	0.96933	98.777	3	0	Plateau	0.86466	1.0344	41.379	5	1	Median	1.0612	1.0228	4.7698	6	0	Median	0.6365	0.69242	16.763	4	0	Median	12478000000	6332700000	6145400000	2147000000	873840000	1273200000	3171000000	1710000000	1461000000	4076500000	1904400000	2172100000	3083600000	1844600000	1239000000	24195	980	22932	151132;151133;151134;151135;151136;151137;151138;151139;151140;151141;151142;151143;151144;151145;151146;151147;151148;151149	204535;204536;204537;204538;204539;204540;204541;204542;204543;204544;204545;204546;204547;204548;204549;204550	204535			16	
IGIEIIKR	1	Unmodified	940.60695	0.60695147	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							3	2	1	1	45.23	44.225	2;3	0.00070744	38670	160511_QHF_FH_JSI11i_3	76.478	5.9528			1.6714	1.6776	106.12	7	2	Median	2.5961	2.0615	21.513	3	1	Plateau	0.21939	0.25923	16.097	2	1	Median	0.65858	0.61006	NaN	1	0	Median	1.6714	1.6776	NaN	1	0	Median	2123100000	878650000	1244500000	1203100000	277500000	925580000	419710000	320460000	99248000	378860000	234500000	144360000	121480000	46203000	75281000	24196	980	22933	151150;151151;151152;151153;151154;151155;151156	204551;204552;204553;204554;204555;204556;204557;204558;204559;204560;204561;204562;204563;204564	204552			14	
IGIFGQDEDVTSK	1	Unmodified	1407.6882	0.6881745	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							2	2	2	2	58.499	57.74	2	0.00014257	49977	160511_QHF_FH_JSI11i_2	84.479	67.249			0.73884	0.66944	44.483	7	6	Median	0.82127	0.66944	NaN	1	1	Median	0.61366	0.73919	28.624	2	2	Median	0.87175	0.86974	15.41	2	1	Median	0.35656	0.38494	57.764	2	2	Median	2059900000	1404200000	655650000	437110000	291680000	145430000	561040000	403160000	157880000	539310000	333480000	205840000	522430000	375920000	146510000	24197	1103	22934	151157;151158;151159;151160;151161;151162;151163;151164	204565;204566;204567;204568;204569;204570;204571;204572	204571			8	
IGIGELITR	0	Unmodified	970.58113	0.58113065	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	65.616	64.796	2	0.00055425	54168	160511_QHF_FH_JSI10i_3	78.516	17.728			0.96075	1.0053	35.034	4	0	Median	1.7821	1.4467	NaN	1	0	Median	0.9213	1.046	NaN	1	0	Median	1.0019	0.96619	NaN	1	0	Median	0.59764	0.61827	NaN	1	0	Median	659470000	336340000	323130000	78375000	27139000	51236000	161820000	78375000	83448000	236240000	115930000	120310000	183030000	114900000	68138000	24198	485	22935	151165;151166;151167;151168	204573	204573			1	
IGIGNHNSK	1	Unmodified	938.49338	0.49337828	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				8.5401	7.9484	2	0.00874	5708	160511_QHF_FH_JSI9i_3	60.91	33.948			1.3979	1.1186	NaN	1	1	Median	1.3979	1.1186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58771000	24062000	34709000	58771000	24062000	34709000	0	0	0	0	0	0	0	0	0	24199	3839	22936	151169	204574	204574			1	
IGIHTGPVCAGVVGLK	1	Unmodified	1576.8759	0.87593247	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	59.197	58.602	2;3	7.1652E-06	48143	160511_QHF_FH_JSI9i_3	99.927	91.328			0.76542	0.74506	33.758	3	0	Plateau	1.4631	1.1709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64594	0.60144	NaN	1	0	Median	0.90699	0.92297	NaN	1	0	Median	218450000	117450000	101000000	24422000	10614000	13809000	0	0	0	97281000	54227000	43054000	96742000	52608000	44135000	24200	1088	22937	151170;151171;151172;151173	204575;204576;204577	204576			3	
IGIIDGEYVVNPTR	0	Unmodified	1544.8199	0.81985738	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.922	70.312	2	0.00036972	61555	160511_QHF_FH_JSI11i_2	77.305	52.088			1.4202	1.4646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4202	1.4646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21390000	9232800	12157000	0	0	0	0	0	0	21390000	9232800	12157000	0	0	0	24201	3709	22938	151174	204578	204578			1	
IGIIDGEYVVNPTRK	1	Unmodified	1672.9148	0.91482039	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	62.724	61.822	2;3	1.5472E-08	51739	160511_QHF_FH_JSI10i_3	141	113.67			0.82592	0.91454	23.524	9	1	Median	0.83177	0.69086	37.363	3	0	Plateau	0.78644	0.91454	11.511	3	0	Median	1.1089	1.0441	0.69144	2	1	Median	0.66131	0.66466	NaN	1	0	Median	1331300000	652240000	679080000	308830000	127880000	180950000	461310000	263480000	197840000	454440000	211250000	243200000	106730000	49635000	57095000	24202	3709	22939	151175;151176;151177;151178;151179;151180;151181;151182;151183	204579;204580;204581;204582;204583;204584;204585;204586;204587;204588;204589;204590	204582			12	
IGIIGGTGLDDPEILEGR	0	Unmodified	1823.9629	0.9628928	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							3	2	3	2	91.359	90.918	2	8.9096E-23	79816	160511_QHF_FH_JSI11i_2	176.25	138.28			1.0272	1.0688	22.549	9	4	Median	1.6192	1.3993	35.188	3	2	Median	0.85172	1.0138	7.4714	2	0	Median	1.0991	1.0907	12.762	3	2	Median	0.68509	0.78217	NaN	1	0	Median	516320000	249340000	266980000	86601000	31798000	54802000	207120000	107360000	99761000	169240000	75946000	93297000	53360000	34243000	19117000	24203	2354	22940	151184;151185;151186;151187;151188;151189;151190;151191;151192;151193	204591;204592;204593;204594;204595;204596;204597;204598;204599;204600;204601;204602;204603	204599			13	
IGIIGGTGLDDPEILEGRTEK	1	Unmodified	2182.1481	0.14812739	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	79.885	79.286	3	2.1785E-07	68796	160511_QHF_FH_JSI12i_3	103.85	87.909			1.0995	1.1464	12.669	5	3	Median	1.0797	0.94173	NaN	1	1	Median	0.98005	1.1374	13.386	2	1	Median	1.336	1.267	NaN	1	0	Median	1.0995	1.1464	NaN	1	1	Median	278680000	132560000	146120000	42198000	16262000	25936000	78634000	40605000	38029000	108710000	47394000	61320000	49132000	28301000	20831000	24204	2354	22941	151194;151195;151196;151197;151198	204604;204605;204606;204607;204608;204609	204609			6	
IGILHENFQTLK	1	Unmodified	1411.7823	0.78234966	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	59.079	58.269	2;3	8.7077E-06	48899	160511_QHF_FH_JSI10i_3	96.745	91.45			0.91304	1.0533	31.9	6	0	Median	1.8002	1.4414	NaN	1	0	Median	0.91304	1.0707	3.5093	2	0	Median	0.98567	0.92541	19.481	2	0	Median	0.55429	0.56662	NaN	1	0	Median	1295300000	735160000	560180000	213530000	79178000	134350000	241600000	142940000	98658000	416290000	218370000	197920000	423920000	294670000	129250000	24205	5725	22942	151199;151200;151201;151202;151203;151204	204610;204611;204612;204613;204614;204615;204616;204617;204618;204619	204613			9	
IGIMPGHIHK	1	Unmodified	1101.6117	0.61171928	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	29.217	28.43	2;3	8.2584E-05	23957	160511_QHF_FH_JSI10i_3	63.216	58.75			0.92591	0.88704	41.86	7	0	Median	1.3703	1.1304	NaN	1	0	Median	0.94187	1.0793	63.816	3	0	Median	0.92591	0.88704	NaN	1	0	Median	0.6905	0.71764	3.7505	2	0	Median	1702100000	823370000	878690000	296770000	106280000	190490000	562780000	273710000	289060000	233310000	108860000	124450000	609200000	334520000	274680000	24206	1800	22943	151205;151206;151207;151208;151209;151210;151211	204620;204621;204622;204623;204624;204625;204626;204627;204628;204629;204630;204631	204621			12	
IGIMPGHIHK	1	Oxidation (M)	1117.6066	0.6066339	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	20.068	20.081	3	0.027085	16445	160511_QHF_FH_JSI12i_3	37.556	31.521			0.49953	0.57924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49953	0.57924	NaN	1	0	Median	72982000	45259000	27724000	0	0	0	0	0	0	0	0	0	72982000	45259000	27724000	24207	1800	22943	151212	204632	204632			0	
IGIPGVK	1	Unmodified	682.43776	0.43776088	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	42.58	41.943	2	0.032606	35900	160511_QHF_FH_JSI12i_2	51.036	31.19			0.97672	0.97699	18.44	7	0	Median	1.4271	1.2259	NaN	1	0	Median	0.84118	1.0161	NaN	1	0	Median	1.0122	0.97699	10.374	3	0	Median	0.69383	0.75463	1.1327	2	0	Median	829320000	442970000	386360000	121360000	54759000	66598000	144180000	85145000	59032000	329380000	160300000	169080000	234410000	142760000	91647000	24208	2286	22944	151213;151214;151215;151216;151217;151218;151219	204633;204634;204635;204636;204637;204638	204634			6	
IGITNHDEYSLVR	0	Unmodified	1515.7682	0.76815616	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	3	2	1	48.17	47.4	2;3	1.2331E-05	41898	160511_QHF_FH_JSI11i_3	103.85	83.426			1.0276	0.98072	20.101	7	3	Median	1.0276	0.87069	NaN	1	1	Median	1.0343	1.1948	30.651	3	1	Median	1.067	1.0122	4.4672	2	0	Median	0.83736	0.84975	NaN	1	1	Median	1139700000	565340000	574370000	49543000	23504000	26038000	206340000	105200000	101140000	705960000	334960000	371010000	177860000	101680000	76180000	24209	5616	22945	151220;151221;151222;151223;151224;151225;151226	204639;204640;204641;204642;204643;204644;204645;204646;204647	204642			9	
IGIVGFCWGGTAVHHLMMK	1	Unmodified	2113.0424	0.042362642	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	3	2	84.499	77.172	3;4	4.1341E-34	42552	160513_QHF_FH_JSI10Kac_6	161.32	145.01			0.91259	0.98356	18.281	9	2	Median	1.427	1.2084	6.6377	2	1	Median	0.88841	1.0582	3.2014	2	0	Median	0.95337	0.90771	7.2596	3	1	Median	0.71555	0.76255	11.374	2	0	Median	4014300000	2062700000	1951600000	804730000	320860000	483870000	1992000000	1229200000	762800000	1002300000	385690000	616630000	215310000	127010000	88300000	24210	4027	22946	151227;151228;151229;151230;151231;151232;151233;151234;151235	204648;204649;204650;204651;204652;204653;204654;204655;204656;204657;204658;204659;204660;204661;204662;204663;204664	204661			17	
IGIVGFCWGGTAVHHLMMK	1	Oxidation (M)	2129.0373	0.037277264	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	80.605	72.712	4	1.8873E-09	40068	160513_QHF_FH_JSI10Kac_6	105.39	95.809			0.90122	1.0158	36.562	6	0	Median	1.9245	1.62	11.871	2	0	Median	0.86506	1.0158	2.2868	2	0	Median	0.93466	0.90891	NaN	1	0	Median	0.59738	0.63158	NaN	1	0	Median	1128400000	553180000	575210000	338000000	109830000	228170000	638270000	355380000	282890000	98756000	53996000	44760000	53361000	33973000	19388000	24211	4027	22946	151236;151237;151238;151239;151240;151241	204665;204666;204667;204668;204669;204670;204671	204669		2376;2377	7	
IGIVGLPNVGK	1	Unmodified	1065.6546	0.65462995	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.88	4	4	4				1	4		4	5	4	4	72.041	68.416	2	2.4052E-07	56652	160511_QHF_FH_JSI9i_3	121.62	105.99			0.99734	1.0886	41.286	17	0	Median	1.6909	1.4112	4.0782	4	0	Median	0.8645	1.0886	62.964	5	0	Median	1.0676	1.0394	7.4219	4	0	Median	0.71476	0.73062	7.5043	4	0	Median	3866400000	1973400000	1893000000	560320000	209830000	350490000	726050000	391020000	335020000	1251800000	600370000	651450000	1328200000	772170000	556030000	24212	4992	22947	151242;151243;151244;151245;151246;151247;151248;151249;151250;151251;151252;151253;151254;151255;151256;151257;151258	204672;204673;204674;204675;204676;204677;204678;204679;204680;204681;204682;204683;204684;204685;204686;204687;204688;204689;204690;204691;204692;204693;204694;204695	204684			24	
IGKDEMLQMIR	1	Unmodified	1332.6894	0.68937725	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	58.47	57.833	2;3	1.6574E-07	51237	160511_QHF_FH_JSI11i_3	117.98	80.55			0.93605	0.92556	15.944	7	0	Median	1.151	0.95069	NaN	1	0	Median	0.66254	0.78972	12.563	2	0	Median	1.2098	1.1367	5.6777	2	0	Median	0.91948	0.92504	0.079554	2	0	Median	1023900000	518860000	505010000	41007000	20699000	20309000	109460000	55266000	54198000	479580000	204640000	274940000	393830000	238260000	155560000	24213	403	22948	151259;151260;151261;151262;151263;151264;151265	204696;204697;204698;204699;204700;204701;204702;204703;204704;204705	204697			10	
IGKPAPDFK	2	Unmodified	971.54402	0.54401687	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.17	2	4	6					1	4	5	4	5	3	25.301	22.25	3	0.0026261	18449	160511_QHF_FH_JSI12i_3	61.65	41.346			0.73624	0.85844	57.043	17	7	Median	1.3663	1.1796	58.382	5	2	Median	0.80427	0.92165	13.388	4	0	Median	0.73064	0.74262	74.944	5	3	Median	0.56409	0.55872	25.109	3	2	Median	43440000000	19805000000	23635000000	11617000000	4779400000	6838000000	6559700000	2841600000	3718100000	14400000000	6411600000	7988800000	10863000000	5772100000	5090600000	24214	1390	22949	151266;151267;151268;151269;151270;151271;151272;151273;151274;151275;151276;151277;151278;151279;151280;151281;151282	204706;204707;204708;204709;204710;204711;204712;204713;204714;204715;204716;204717;204718;204719;204720;204721;204722;204723;204724;204725;204726;204727;204728	204726			23	
IGKPHTVPCK	2	Unmodified	1135.6172	0.61719858	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.46			12						1	3	3	4	3	10.126	9.1531	2;3;4	0.00011515	7025	160511_QHF_FH_JSI11i_3	111.06	59.203			1.4891	1.2084	49.726	13	0	Median	1.5864	1.222	2.7676	3	0	Plateau	0.80831	0.97158	9.4107	3	0	Median	1.1952	1.1364	78.026	4	0	Median	1.5364	1.5749	62.355	3	0	Median	9398400000	3643500000	5754900000	1355600000	481330000	874300000	1584800000	729010000	855840000	3019000000	1174900000	1844000000	3438900000	1258200000	2180700000	24215	1084	22950	151283;151284;151285;151286;151287;151288;151289;151290;151291;151292;151293;151294;151295	204729;204730;204731;204732;204733;204734;204735;204736;204737;204738;204739;204740;204741;204742;204743;204744;204745;204746	204732			18	
IGKPHTVPCK	2	Acetyl (K)	1177.6278	0.62776327	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		31.322	22.628	3	0.0010334	12764	160513_QHF_FH_JSI11Kac_6	66.19	41.899			1.619	1.74	263.59	2	1	Median	NaN	NaN	NaN	0	0	Median	9.501	11.22	NaN	1	1	Median	0.27589	0.26983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46003000	31834000	14169000	0	0	0	6051600	477540	5574100	39951000	31357000	8594900	0	0	0	24216	1084	22950	151296;151297	204747;204748	204747	932		2	
IGLADYALESGGASVISTR	0	Unmodified	1878.9687	0.96870646	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			82.673	82.007	3	0.0048729	72989	160511_QHF_FH_JSI10i_2	43.116	34.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24217	5290	22951	151298	204749	204749			1	
IGLAVCYDMR	0	Unmodified	1196.5682	0.56819948	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		29.141	28.362	2	0.012624	23962	160511_QHF_FH_JSI11i_2	44.961	13.657			1.034	0.87004	34.756	3	0	Plateau	0.98656	0.81845	NaN	1	0	Median	1.3504	1.6191	NaN	1	0	Median	1.278	1.292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1056100000	519700000	536410000	630280000	301040000	329240000	118890000	58068000	60821000	306940000	160590000	146350000	0	0	0	24218	3372	22952	151299;151300;151301	204750;204751	204751			2	
IGLETVGVK	1	Unmodified	914.54368	0.54368251	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.31	2	4	1				2	3		2	4	4	2	51.676	46.668	2	0.0004804	40228	160511_QHF_FH_JSI11i_2	79.906	37.797			0.9412	1.0776	26.563	12	0	Median	1.5304	1.2573	4.6807	2	0	Median	0.9412	1.1063	19.154	4	0	Median	0.94242	0.92156	16.135	4	0	Median	0.60056	0.6725	2.7489	2	0	Median	3685400000	1870600000	1814800000	666230000	233460000	432770000	891850000	480390000	411470000	1451300000	741630000	709700000	676000000	415090000	260910000	24219	2778	22953	151302;151303;151304;151305;151306;151307;151308;151309;151310;151311;151312;151313	204752;204753;204754;204755;204756;204757;204758;204759;204760;204761;204762;204763	204761			12	
IGLFGGAGVGK	1	Unmodified	974.55492	0.5549159	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.9	1	3	5						3	2	3	4	3	59.316	56.279	2	0.00014745	49857	160511_QHF_FH_JSI10i_2	94.302	45.515			1.1956	1.1169	35.272	12	5	Median	1.5382	1.3595	37.246	2	1	Median	1.0929	0.99965	15.349	3	2	Plateau	1.2517	1.2109	9.9596	4	2	Median	0.53999	0.60752	69.433	3	0	Plateau	27287000000	12367000000	14920000000	5500500000	1935300000	3565200000	13241000000	6418100000	6822800000	8267700000	3861200000	4406500000	277690000	152650000	125040000	24220	851	22954	151314;151315;151316;151317;151318;151319;151320;151321;151322;151323;151324;151325	204764;204765;204766;204767;204768;204769;204770;204771;204772;204773;204774;204775;204776	204774			11	
IGLFNSSADR	0	Unmodified	1078.5407	0.5407224	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		43.514	42.742	2	0.010542	37553	160511_QHF_FH_JSI11i_3	47.574	24.051			0.95354	1.0083	7.4668	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92116	1.0629	NaN	1	0	Median	0.98706	0.9564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129930000	59016000	70918000	0	0	0	67496000	29119000	38377000	62439000	29897000	32542000	0	0	0	24221	1042	22955	151326;151327	204777;204778	204777			2	
IGLFYMDNDLITR	0	Unmodified	1569.7861	0.78611441	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		4	1						2	1	1	2	3	93.621	90.757	2	3.9492E-05	44063	160513_QHF_FH_JSI11Kac_6	93.839	69.548			1.0226	1.0939	24.93	7	1	Median	1.9344	1.5917	NaN	1	0	Median	0.95062	1.1309	NaN	1	0	Median	1.2019	1.1526	7.3908	2	0	Median	0.96015	1.0041	19.809	3	1	Plateau	317260000	160310000	156940000	25990000	11984000	14006000	50430000	29401000	21029000	113140000	52670000	60474000	127690000	66260000	61433000	24222	2598	22956	151328;151329;151330;151331;151332;151333;151334	204779;204780;204781;204782;204783;204784;204785	204780			7	
IGLGTDVAGGYSYSMLDAIR	0	Unmodified	2058.0092	0.0091910629	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	2		1	97.046	96.871	2	1.2454E-24	85785	160511_QHF_FH_JSI10i_2	171.76	135.44			0.6809	0.57375	18.911	4	0	Linear	0.81917	0.68105	NaN	1	0	Median	0.59112	0.69613	32.355	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60402	0.65394	NaN	1	0	Median	152120000	93577000	58538000	35228000	19994000	15234000	72608000	45355000	27253000	0	0	0	44279000	28229000	16050000	24223	5536	22957	151335;151336;151337;151338	204786;204787;204788;204789;204790;204791	204791			6	
IGLIHGHQVIPWGDMASLALLQR	0	Unmodified	2524.3737	0.37366784	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	89.747	81.967	3;4;5	9.6853E-49	43746	160513_QHF_FH_JSI12Kac_6	185.61	171.51			0.98462	1.1345	18.888	10	1	Median	1.6394	1.4049	5.5166	2	0	Median	0.89637	1.0525	11.796	4	1	Median	1.2277	1.1631	3.5267	2	0	Median	0.8056	0.84749	6.5536	2	0	Median	9097500000	4491700000	4605800000	1212300000	341230000	871050000	4327200000	2366300000	1960900000	2434600000	1130700000	1303900000	1123400000	653510000	469930000	24224	5246	22958	151339;151340;151341;151342;151343;151344;151345;151346;151347;151348	204792;204793;204794;204795;204796;204797;204798;204799;204800;204801;204802	204797			10	
IGLIHGHQVIPWGDMASLALLQR	0	Oxidation (M)	2540.3686	0.36858246	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			83.473	76.367	4	2.4802E-12	42857	160513_QHF_FH_JSI10Kac_6	103.27	87.374			1.1648	1.1807	12.328	2	1	Median	1.4801	1.2883	NaN	1	1	Median	0.91664	1.0822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	640640000	256320000	384310000	292270000	69821000	222450000	348360000	186500000	161860000	0	0	0	0	0	0	24225	5246	22958	151349;151350	204803;204804	204804		2613	2	
IGLINDMVR	0	Unmodified	1029.5641	0.56410038	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	60.525	59.745	2	0.00014996	52798	160511_QHF_FH_JSI10i_2	89.355	24.103			1.0865	1.2392	27.846	7	0	Median	2.1488	1.8588	NaN	1	0	Median	1.0609	1.2781	4.3628	2	0	Median	1.2416	1.2223	24.957	2	0	Median	0.83315	0.8753	4.4523	2	0	Median	3176600000	1470700000	1705900000	286660000	89868000	196790000	733660000	381510000	352160000	1236900000	514670000	722270000	919380000	484670000	434710000	24226	2502	22959	151351;151352;151353;151354;151355;151356;151357	204805;204806;204807;204808;204809;204810;204811;204812;204813;204814	204811			10	
IGLIQFCLSAPK	1	Unmodified	1345.7428	0.74279303	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	3	2	87.037	82.004	2;3	3.2775E-19	42307	160513_QHF_FH_JSI11Kac_6	156.48	137.73			0.93022	0.96748	21.628	7	0	Median	1.4982	1.2508	3.8462	2	0	Median	0.87076	1.017	7.0561	2	0	Median	0.84081	0.80983	16.149	2	0	Median	0.72337	0.7768	NaN	1	0	Median	2528400000	1241600000	1286800000	499760000	176150000	323610000	1003600000	507080000	496480000	871460000	459520000	411940000	153630000	98820000	54805000	24227	1722	22960	151358;151359;151360;151361;151362;151363;151364;151365;151366	204815;204816;204817;204818;204819;204820;204821;204822;204823;204824;204825;204826;204827;204828;204829;204830;204831	204820			17	
IGLIQGNR	0	Unmodified	869.5083	0.50830006	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			29.216	27.835	2	0.0046301	23266	160511_QHF_FH_JSI10i_3	77.374	28.614			1.7347	1.3862	NaN	1	1	Median	1.7347	1.3862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243230000	96391000	146840000	243230000	96391000	146840000	0	0	0	0	0	0	0	0	0	24228	897	22961	151367;151368	204832;204833	204832			2	
IGLIQHLPK	1	Unmodified	1017.6335	0.63350058	5580	Q9Y3C5	RNF11	RING finger protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		45.908	44.851	3	3.1875E-05	37684	160511_QHF_FH_JSI10i_3	90.657	81.443			1.023	0.95547	23.705	3	0	Median	1.5929	1.3141	NaN	1	0	Median	0.72367	0.82679	NaN	1	0	Median	1.023	0.95547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91821000	36040000	55781000	41432000	14455000	26977000	28636000	15023000	13613000	21752000	6561600	15191000	0	0	0	24229	5580	22962	151369;151370;151371	204834;204835;204836	204835			3	
IGLLDPR	0	Unmodified	782.46504	0.46503826	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	46.256	45.604	2	0.012433	40249	160511_QHF_FH_JSI10i_2	69.39	34.497			0.90713	1.0806	42.782	7	2	Median	1.4952	1.2849	NaN	1	0	Median	0.90713	1.1198	NaN	1	0	Median	1.0762	1.0806	29.697	3	1	Median	0.4989	0.53756	46.254	2	1	Median	1225900000	695580000	530340000	136390000	54213000	82179000	186170000	95876000	90293000	476610000	251040000	225570000	426750000	294450000	132300000	24230	2676	22963	151372;151373;151374;151375;151376;151377;151378	204837;204838;204839;204840;204841;204842;204843;204844;204845;204846	204844			10	
IGLLGHPPHMNVNPQQPA	0	Unmodified	1918.9836	0.98358543	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	59.275	58.443	2;3	5.2537E-06	48936	160511_QHF_FH_JSI10i_3	89.466	79.302			0.9274	0.94503	24.211	4	1	Median	1.8132	1.4539	NaN	1	1	Median	0.8296	0.93594	NaN	1	0	Median	1.0367	0.9542	NaN	1	0	Median	0.8121	0.8385	NaN	1	0	Median	946180000	466640000	479540000	125910000	43606000	82300000	143290000	78617000	64669000	361680000	162930000	198750000	315310000	181480000	133820000	24231	2549	22964	151379;151380;151381;151382;151383	204847;204848;204849;204850;204851;204852;204853;204854	204850			8	
IGLLLAAK	1	Unmodified	797.53747	0.53747492	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	59.812	58.985	2	0.0077101	50595	160511_QHF_FH_JSI12i_3	58.687	33.688			0.98834	1.0428	19.257	4	0	Median	1.5301	1.2776	NaN	1	0	Median	0.8885	1.0473	NaN	1	0	Median	1.0994	1.0383	NaN	1	0	Median	0.78946	0.79893	NaN	1	0	Median	422250000	209180000	213070000	101390000	39235000	62154000	96041000	52311000	43730000	84557000	40109000	44448000	140260000	77522000	62740000	24232	4039	22965	151384;151385;151386;151387	204855;204856;204857;204858;204859;204860	204860			6	
IGLLVKNK	2	Acetyl (K)	925.59605	0.59605244	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		58.735	49.012	2	0.026409	26490	160513_QHF_FH_JSI11Kac_6	58.819	18.246			0.29976	0.29446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29976	0.29446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24120000	19579000	4541000	0	0	0	0	0	0	24120000	19579000	4541000	0	0	0	24233	1600	22966	151388	204861	204861	1626		1	
IGLPHSIK	1	Unmodified	863.52289	0.52288749	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							3	3	4	3	33.459	32.815	2;3	0.0014096	28526	160511_QHF_FH_JSI11i_3	71.501	56.062			0.80875	0.85315	17.815	13	5	Median	1.2153	0.97561	16.18	3	0	Median	0.77365	0.87772	8.7268	3	0	Median	0.93518	0.90559	11.176	4	3	Linear	0.64493	0.64319	11.872	3	2	Plateau	5015100000	2612700000	2402300000	1092100000	467030000	625090000	868690000	463650000	405040000	1206800000	555580000	651170000	1847500000	1126500000	721000000	24234	2538	22967	151389;151390;151391;151392;151393;151394;151395;151396;151397;151398;151399;151400;151401	204862;204863;204864;204865;204866;204867;204868;204869;204870;204871;204872;204873;204874;204875;204876;204877;204878;204879;204880;204881;204882;204883;204884;204885;204886	204865			25	
IGLSVSEVIEGYEIACRK	1	Unmodified	2022.0456	0.045576569	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			93.999	93.022	3	0.017351	77612	160511_QHF_FH_JSI10i_3	31.462	27.36			1.1848	1.3269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1848	1.3269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21889000	9691000	12198000	0	0	0	21889000	9691000	12198000	0	0	0	0	0	0	24235	1721	22968	151402	204887;204888	204888			2	
IGMDALQIYPISQANANQR	0	Unmodified	2102.0579	0.05787259	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		84.933	84.352	2	0.00022309	74186	160511_QHF_FH_JSI11i_2	83.769	52.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24236	3861	22969	151403;151404	204889;204890	204890			2	
IGMGKPAITK	2	Acetyl (K);Oxidation (M)	1072.5951	0.59506616	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.911						3	6	6	2	2	5	4	6	38.695	28.567	2	0.00012848	17652	160513_QHF_FH_JSI10Kac_4	96.143	73.906			0.79806	0.89357	25.469	17	0	Median	1.5704	1.3234	15.267	2	0	Median	0.79806	0.94064	15.977	5	0	Median	0.85381	0.84854	15.469	4	0	Median	0.70777	0.77004	21.801	6	0	Median	539060000	269990000	269060000	105110000	42119000	62987000	137060000	69579000	67482000	99733000	49326000	50407000	197160000	108970000	88185000	24237	3647	22970	151405;151406;151407;151408;151409;151410;151411;151412;151413;151414;151415;151416;151417;151418;151419;151420;151421	204891;204892;204893;204894;204895;204896;204897;204898;204899;204900;204901;204902;204903;204904;204905	204893	2906	2277	14	
IGMGKPAITK	2	Acetyl (K)	1056.6002	0.60015154	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.829							2	1	1		2	1	1	54.818	44.661	2	0.013698	25899	160513_QHF_FH_JSI11Kac_4	56.916	42.247			0.92599	0.81124	15.459	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.65847	0.78567	10.625	2	0	Median	1.0534	1.0395	NaN	1	0	Median	0.71724	0.77703	NaN	1	0	Median	356610000	202570000	154040000	0	0	0	102870000	60954000	41912000	146000000	71575000	74422000	107740000	70040000	37704000	24238	3647	22970	151422;151423;151424;151425	204906;204907	204906	2906		2	
IGNCPFSQR	0	Unmodified	1077.5026	0.50256276	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.6	3	2	4					1	4	4	3	4	3	27.312	23.765	2	2.693E-05	19758	160511_QHF_FH_JSI10i_3	103.83	100.44			1.055	1.1239	28.284	14	0	Median	1.7584	1.4837	14.325	4	0	Median	0.98714	1.1436	13.313	3	0	Median	1.0199	0.98146	43.597	4	0	Median	0.92559	0.93484	10.584	3	0	Median	2316300000	1060700000	1255600000	636230000	238410000	397820000	595550000	309800000	285750000	805000000	362780000	442220000	279490000	149660000	129820000	24239	119	22971	151426;151427;151428;151429;151430;151431;151432;151433;151434;151435;151436;151437;151438;151439	204908;204909;204910;204911;204912;204913;204914	204910			7	
IGNFGMHLK	1	Unmodified	1015.5273	0.52732094	5632	Q9Y4K3	TRAF6	TNF receptor-associated factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	42.891	41.782	3	0.011787	35043	160511_QHF_FH_JSI10i_3	35.826	26.612			0.64799	0.73716	14.158	3	1	Plateau	0.84962	0.6878	NaN	1	0	Median	0.64799	0.76094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59676	0.57534	NaN	1	1	Median	114280000	68105000	46170000	36948000	18379000	18569000	44753000	27352000	17401000	0	0	0	32575000	22374000	10200000	24240	5632	22972	151440;151441;151442	204915;204916;204917;204918	204915			4	
IGNFIVK	1	Unmodified	789.47487	0.47487467	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.971	44.12	2	0.027514	36175	160511_QHF_FH_JSI9i_3	53.554	19.816			1.0617	0.84625	22.267	4	0	Linear	1.6234	1.3037	NaN	1	0	Median	0.95864	1.1205	NaN	1	0	Median	1.1758	1.1082	NaN	1	0	Median	0.73557	0.77155	NaN	1	0	Median	1395100000	686540000	708580000	146050000	52641000	93413000	294470000	144400000	150060000	406080000	185620000	220460000	548520000	303870000	244650000	24241	2160	22973	151443;151444;151445;151446	204919;204920	204920			2	
IGNFLNYGSHTGDADGFK	1	Unmodified	1911.8751	0.87514042	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	3	3	2	61.652	61.014	2;3	7.2953E-13	52504	160511_QHF_FH_JSI12i_3	176.91	162.35			0.95314	0.87361	26.07	8	5	Median	0.96869	0.80629	NaN	1	1	Median	0.80011	0.91574	25.205	2	1	Median	1.2199	1.1252	13.095	3	2	Median	0.61152	0.62833	1.1702	2	1	Median	1593000000	853550000	739410000	100460000	58158000	42298000	166130000	87838000	78294000	1055500000	535540000	519950000	270880000	172020000	98863000	24242	2787	22974	151447;151448;151449;151450;151451;151452;151453;151454;151455	204921;204922;204923;204924;204925;204926;204927;204928;204929;204930	204930			10	
IGNSYFK	1	Unmodified	827.41775	0.41775372	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	27.301	26.48	2	0.019546	22473	160511_QHF_FH_JSI11i_3	58.167	37.612			0.76706	0.8623	32.8	6	1	Median	1.7749	1.4211	NaN	1	0	Median	0.76706	0.9034	18.789	2	1	Median	0.9981	0.94002	NaN	1	0	Median	0.57804	0.6122	8.118	2	0	Median	5077500000	2574000000	2503500000	425510000	171580000	253930000	1328100000	756220000	571850000	1890200000	789170000	1101000000	1433800000	857020000	576730000	24243	1386	22975	151456;151457;151458;151459;151460;151461	204931;204932;204933;204934;204935;204936;204937	204931			7	
IGNTEDGAPHKEDEPSVGQVAR	1	Unmodified	2305.0935	0.093466053	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			27.669	26.69	3	0.039843	23038	160511_QHF_FH_JSI9i_2	28.412	13.643			0.8469	1.0423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8469	1.0423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33901000	14444000	19458000	10204000	0	10204000	23697000	14444000	9253200	0	0	0	0	0	0	24244	4582	22976	151462;151463	204938;204939	204938			2	
IGNTGGMLDNILASK	1	Oxidation (M)	1518.7712	0.77119262	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	60.896	60.069	2	0.00015453	50462	160511_QHF_FH_JSI10i_3	103.75	85.079			0.63843	0.48772	31.946	8	1	Linear	1.5129	1.2239	4.0107	2	0	Median	0.97785	1.1294	3.5184	2	0	Median	0.90796	0.85005	33.678	2	0	Median	0.603	0.61221	8.2194	2	1	Median	758620000	380480000	378140000	93633000	35536000	58098000	138630000	61873000	76753000	161120000	72498000	88626000	365240000	210570000	154670000	24245	1798	22977	151464;151465;151466;151467;151468;151469;151470;151471	204940;204941;204942;204943;204944;204945;204946;204947;204948	204943		1476	9	
IGNTGGMLDNILASK	1	Unmodified	1502.7763	0.776278	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.21	0.773	3	5	6							2	4	3	5	77.519	76.897	2;3	9.5756E-11	67040	160511_QHF_FH_JSI12i_3	170.56	161.6			0.83858	0.95525	43.93	14	2	Median	1.7058	1.417	11.688	2	0	Median	0.79431	0.96177	19.635	4	0	Median	1.0594	1.0053	11.81	3	0	Median	0.63884	0.71649	50.89	5	2	Median	6434900000	3625200000	2809600000	885840000	340570000	545270000	1357300000	649600000	707680000	1661000000	1032300000	628630000	2530800000	1602700000	928060000	24246	1798	22977	151472;151473;151474;151475;151476;151477;151478;151479;151480;151481;151482;151483;151484;151485	204949;204950;204951;204952;204953;204954;204955;204956;204957;204958;204959;204960;204961;204962;204963;204964;204965;204966;204967;204968;204969;204970;204971;204972;204973;204974;204975	204973			27	
IGPATWAMATSKPDIMIILLSK	2	Unmodified	2356.2898	0.28984636	4854	Q9HCD6	TANC2	Protein TANC2	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		96.523	87.124	3	0.0030967	49526	160513_QHF_FH_JSI11Kac_6	66.889	52.276			1.9781	1.8577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9781	1.8577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77335000	16928000	60407000	0	0	0	0	0	0	77335000	16928000	60407000	0	0	0	24247	4854	22978	151486	204976	204976			1	
IGPIATPDYIQNAPGLPK	1	Unmodified	1864.0094	0.0094490594	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.891	82.528	3	0.0038593	75208	160511_QHF_FH_JSI11i_1	47.548	24.942			0.65832	0.62915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65832	0.62915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9495200	6546000	2949200	0	0	0	0	0	0	9495200	6546000	2949200	0	0	0	24248	4938	22979	151487	204977	204977			1	
IGPILDNSTLQSEVKPILEK	2	Unmodified	2193.2256	0.22564942	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.682	2	7	7							3	4	5	4	89.236	88.797	2;3	5.5178E-25	79388	160511_QHF_FH_JSI11i_3	171.21	162.61			1.0013	1.0404	25.033	14	4	Median	1.07	0.8707	26.127	2	0	Median	0.85481	1.0444	3.9632	3	0	Plateau	1.0902	1.0685	28.924	5	2	Median	1.0874	1.147	30.269	4	2	Median	7278900000	3654600000	3624400000	684830000	313130000	371700000	952720000	501900000	450820000	2653300000	1087200000	1566100000	2988100000	1752300000	1235800000	24249	1345	22980	151488;151489;151490;151491;151492;151493;151494;151495;151496;151497;151498;151499;151500;151501;151502;151503	204978;204979;204980;204981;204982;204983;204984;204985;204986;204987;204988;204989;204990;204991;204992;204993;204994;204995;204996;204997;204998;204999;205000;205001;205002;205003;205004;205005;205006;205007;205008;205009	204980			32	
IGPILDTNALQGEVKPVLQK	2	Unmodified	2132.2205	0.22050447	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	84.431	83.915	3	5.0557E-25	72913	160511_QHF_FH_JSI12i_3	172.23	163.14			0.84895	0.81706	27.37	5	0	Median	0.84895	0.7132	NaN	1	0	Median	0.67942	0.80387	2.301	2	0	Median	1.5118	1.4295	NaN	1	0	Median	0.97321	0.97796	NaN	1	0	Median	552090000	279240000	272850000	67555000	37678000	29877000	91392000	56647000	34745000	163850000	74337000	89518000	229290000	110580000	118710000	24250	1346	22981	151504;151505;151506;151507;151508	205010;205011;205012;205013;205014;205015;205016;205017	205017			8	
IGPITPLEFYR	0	Unmodified	1304.7129	0.71287311	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	85.629	84.942	2	0.0017697	74678	160511_QHF_FH_JSI11i_2	61.161	50.638			1.1225	1.0998	8.1321	4	0	Median	1.2706	1.0833	NaN	1	0	Median	0.85794	1.0425	NaN	1	0	Median	1.241	1.2585	NaN	1	0	Median	1.0153	1.1166	NaN	1	0	Median	994940000	484100000	510840000	205310000	98588000	106720000	255230000	124130000	131100000	312320000	143460000	168860000	222080000	117920000	104160000	24251	2475	22982	151509;151510;151511;151512	205018;205019	205018			2	
IGPLGLSPK	1	Unmodified	880.5382	0.53820321	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.67	4	2	5					1		4	3	2	3	52.261	50.68	1;2	0.0004804	42373	160511_QHF_FH_JSI10i_3	79.906	36.66			1.0709	1.0329	14.595	12	0	Median	1.1939	1.0052	17.93	4	0	Median	0.90517	1.0543	10.039	3	0	Median	1.1798	1.1119	13.313	2	0	Median	0.93055	0.92649	19.124	3	0	Median	18304000000	8408000000	9895900000	4138200000	1701900000	2436300000	5500600000	2589400000	2911200000	348240000	180900000	167340000	8316900000	3935800000	4381100000	24252	1340	22983	151513;151514;151515;151516;151517;151518;151519;151520;151521;151522;151523;151524	205020;205021;205022;205023;205024;205025;205026;205027;205028;205029;205030;205031;205032;205033;205034;205035;205036;205037;205038;205039;205040;205041;205042;205043;205044;205045;205046;205047;205048;205049;205050;205051	205026			31	
IGPLGLSPKK	2	Unmodified	1008.6332	0.63316622	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			40.135	38.626	3	0.012345	31534	160511_QHF_FH_JSI9i_3	41.689	32.332			0.55653	0.53652	21.589	2	2	Median	0.77221	0.62501	NaN	1	1	Median	0.40109	0.46056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80974000	41889000	39085000	44248000	19942000	24306000	36726000	21947000	14779000	0	0	0	0	0	0	24253	1340	22984	151525;151526	205052;205053	205053			2	
IGPQHQAGSDSLLTGMAFFK	1	Unmodified	2104.0412	0.041159893	5335	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			86.831	86.308	3	6.9577E-06	76670	160511_QHF_FH_JSI10i_2	73.809	56.731			0.88551	0.89772	11.933	2	0	Median	1.1247	0.97675	NaN	1	0	Median	0.69719	0.82508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30760000	17351000	13410000	15007000	6821800	8185400	15753000	10529000	5224400	0	0	0	0	0	0	24254	5335	22985	151527;151528	205054;205055	205055			2	
IGPYQPNVPVGIDYVIPK	1	Unmodified	1968.072	0.072049316	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.8	8	9	8							7	5	6	7	95.528	95.159	2;3	8.597E-22	84383	160511_QHF_FH_JSI10i_2	206.18	182.96			0.9068	0.85576	10.526	25	6	Median	1.0492	0.85576	7.9271	7	2	Median	0.70107	0.83413	3.6244	5	1	Median	1.0197	0.98334	6.0019	6	0	Median	0.76086	0.82815	10.847	7	3	Median	2766800000	1468600000	1298200000	440260000	220120000	220130000	799540000	479290000	320260000	805290000	373740000	431540000	721720000	395490000	326230000	24255	1556	22986	151529;151530;151531;151532;151533;151534;151535;151536;151537;151538;151539;151540;151541;151542;151543;151544;151545;151546;151547;151548;151549;151550;151551;151552;151553	205056;205057;205058;205059;205060;205061;205062;205063;205064;205065;205066;205067;205068;205069;205070;205071;205072;205073;205074;205075;205076;205077;205078;205079;205080;205081;205082;205083;205084;205085;205086;205087;205088;205089;205090;205091;205092;205093;205094;205095;205096;205097;205098;205099;205100;205101;205102;205103;205104;205105;205106;205107;205108;205109;205110;205111	205110			56	
IGQFLFWHLR	0	Unmodified	1315.719	0.71896154	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.803	75.56	3	1.3638E-12	42633	160513_QHF_FH_JSI10Kac_6	129.38	90.98			0.90733	0.97976	24.941	4	0	Median	1.6588	1.429	NaN	1	0	Median	0.82714	0.98125	NaN	1	0	Median	0.9953	0.97829	NaN	1	0	Median	0.72736	0.78332	NaN	1	0	Median	255120000	127650000	127470000	49483000	20799000	28684000	164130000	83756000	80375000	25788000	15479000	10309000	15718000	7614400	8103800	24256	1534	22987	151554;151555;151556;151557	205112;205113;205114;205115;205116;205117	205117			6	
IGQGASGTVFTATDVALGQEVAIK	1	Unmodified	2332.2274	0.22744034	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	89.701	89.289	3	5.3916E-09	81266	160511_QHF_FH_JSI11i_1	91.238	75.984			0.71331	0.70458	22.744	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8515	0.82752	NaN	1	1	Median	0.59755	0.59991	NaN	1	1	Median	45038000	24620000	20418000	0	0	0	0	0	0	17361000	9948500	7412900	27676000	14672000	13005000	24257	2366	22988	151558;151559	205118;205119;205120	205118			3	
IGQGTFGEVFK	1	Unmodified	1181.6081	0.60807369	1717	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	59.883	59.227	2	0.00093635	52497	160511_QHF_FH_JSI11i_3	67.334	53.127			0.81801	0.88117	6.5307	6	0	Median	1.0868	0.92216	NaN	1	0	Median	0.74958	0.90766	NaN	1	0	Median	0.86035	0.83607	10.413	2	0	Median	0.81015	0.84601	2.7751	2	0	Median	538510000	291920000	246580000	51388000	28704000	22684000	73329000	46392000	26937000	215950000	111920000	104040000	197830000	104910000	92922000	24258	1717	22989	151560;151561;151562;151563;151564;151565	205121;205122;205123;205124;205125;205126	205121			6	
IGQGYLIK	1	Unmodified	890.52255	0.52255314	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	2	1	3	3	42.086	38.359	2	0.0017531	33591	160511_QHF_FH_JSI11i_3	85.265	32.582			1.3258	1.3072	21.951	9	2	Median	1.7949	1.5014	19.589	2	0	Median	1.2971	1.5046	NaN	1	0	Median	1.3662	1.2969	27.26	3	1	Median	1.1908	1.1956	22.842	3	1	Median	13959000000	6179200000	7780200000	716890000	299330000	417560000	1416100000	634640000	781460000	5327000000	2374500000	2952500000	6499400000	2870700000	3628700000	24259	1484	22990	151566;151567;151568;151569;151570;151571;151572;151573;151574	205127;205128;205129;205130;205131;205132;205133;205134;205135;205136;205137;205138;205139;205140;205141;205142;205143;205144	205128			18	
IGQGYLIKDGK	2	Acetyl (K)	1232.6765	0.6764876	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.3	0.471							2	1				2	1	56.241	45.446	2	2.109E-05	25726	160513_QHF_FH_JSI12Kac_4	103.34	74.255			0.31482	0.3075	20.615	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33394	0.33011	14.986	2	0	Median	0.41784	0.44841	NaN	1	0	Median	79032000	59358000	19674000	0	0	0	0	0	0	61848000	47600000	14248000	17185000	11759000	5426100	24260	1484	22991	151575;151576;151577	205145;205146;205147;205148	205146	1492		4	
IGQLFFGVPPK	1	Unmodified	1201.6859	0.68593008	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	78.06	78.06	2	0.010505	67687	160511_QHF_FH_JSI12i_3	46.891	20.786			2.0346	1.8883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0346	1.8883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13084000	4976000	8108200	0	0	0	0	0	0	13084000	4976000	8108200	0	0	0	24261	3231	22992	151578;151579	205149;205150	205150			2	
IGQLYYHYYLR	0	Unmodified	1487.7561	0.75613491	3579	Q8N9R8	SCAI	Protein SCAI	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	65.808	56.878	2;3	6.9606E-10	30160	160513_QHF_FH_JSI9Kac_6	120.09	104.15			0.94193	1.0406	15.303	5	0	Median	1.2009	1.0544	NaN	1	0	Median	0.8748	1.0383	9.715	2	0	Median	1.0703	1.0406	NaN	1	0	Median	0.69699	0.75413	NaN	1	0	Median	537720000	264950000	272770000	78225000	33105000	45120000	355700000	173740000	181960000	45315000	22233000	23082000	58476000	35875000	22601000	24262	3579	22993	151580;151581;151582;151583;151584	205151;205152;205153;205154;205155;205156;205157;205158	205152			7	
IGQPSIALEYINTAIESTPTLIELFLVK	1	Unmodified	3072.6999	0.69985539	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	3	1	3	2	105.51	98.619	3;4	2.8373E-41	55592	160513_QHF_FH_JSI9Kac_6	159.56	152.63			1.0161	1.1026	25.941	8	1	Median	1.5081	1.2869	5.8249	2	0	Median	0.92077	1.1122	NaN	1	0	Median	1.1214	1.0931	18.976	3	1	Median	0.66509	0.70853	12.231	2	0	Median	1016100000	457730000	558380000	547130000	206430000	340700000	276080000	137640000	138440000	56191000	30975000	25216000	136710000	82689000	54026000	24263	4518	22994	151585;151586;151587;151588;151589;151590;151591;151592;151593	205159;205160;205161;205162;205163;205164;205165;205166;205167;205168;205169;205170	205163			12	
IGQPTLLLYVDAGPETMTQR	0	Unmodified	2202.1355	0.13545421	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	3	3	1	96.404	96.193	2;3	1.1874E-10	82850	160511_QHF_FH_JSI12i_2	127.26	106.88			0.88126	0.91049	18.504	6	2	Median	1.3135	1.1308	NaN	1	1	Median	0.90051	1.1011	27.293	2	1	Median	0.88126	0.88397	4.5907	2	0	Median	0.74066	0.83478	NaN	1	0	Median	108370000	47187000	61179000	11814000	3304700	8509600	32581000	16319000	16262000	54636000	22490000	32146000	9334400	5072400	4262000	24264	776	22995	151594;151595;151596;151597;151598;151599;151600;151601	205171;205172;205173;205174;205175;205176;205177;205178;205179	205172			9	
IGQPTVSYFLK	1	Unmodified	1251.6863	0.68632401	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.781	2	3	5							2	3	4	1	70.246	69.561	2	2.6534E-05	60144	160511_QHF_FH_JSI12i_3	99.653	58.929			1.0621	1.0935	30.109	9	1	Median	2.1309	1.7834	2.0308	2	0	Median	1.0586	1.3245	32.894	3	0	Plateau	1.0621	1.129	8.2486	3	1	Plateau	0.82589	0.84188	NaN	1	0	Median	1069200000	504590000	564600000	128930000	43354000	85576000	233370000	118150000	115210000	290130000	130520000	159610000	416760000	212570000	204200000	24265	5575	22996	151602;151603;151604;151605;151606;151607;151608;151609;151610;151611	205180;205181;205182;205183;205184;205185;205186;205187;205188;205189	205188			10	
IGQQNEVR	0	Unmodified	942.48829	0.4882929	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.4822	8.0392	2	0.019076	5855	160511_QHF_FH_JSI9i_2	47.082	27.445			0.87695	0.96762	21.218	4	0	Median	1.3838	1.1652	NaN	1	0	Median	0.79017	0.9951	NaN	1	0	Median	0.97325	0.9409	NaN	1	0	Median	0.62163	0.70134	NaN	1	0	Median	453500000	243940000	209560000	93181000	42503000	50678000	95738000	56539000	39198000	150640000	69639000	80998000	113940000	75259000	38684000	24266	1736;1737	22997	151612;151613;151614;151615	205190;205191;205192	205190			3	
IGQQPQQPGAPPQQDYTK	1	Unmodified	1979.9701	0.97010344	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	3.45	10					1				3	2	4	2	32.477	30.962	2;3	1.3271E-08	27207	160511_QHF_FH_JSI9i_1	136.3	128.84			0.92882	0.9345	7.721	10	2	Median	1.2092	0.99149	1.9234	3	2	Plateau	0.79765	0.92991	1.1044	2	0	Median	0.9246	0.91757	8.2879	3	0	Plateau	0.79158	0.84046	2.5209	2	0	Median	1072600000	547690000	524910000	330600000	145440000	185160000	242420000	136000000	106420000	250930000	123310000	127620000	248660000	142950000	105720000	24267	3911	22998	151616;151617;151618;151619;151620;151621;151622;151623;151624;151625;151626	205193;205194;205195;205196;205197;205198;205199;205200;205201;205202;205203;205204;205205;205206;205207;205208;205209;205210;205211;205212;205213	205209			20	
IGRDQELYFFHELSPGSCFFLPK	1	Unmodified	2786.3527	0.35265763	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	2	2	93.646	87.527	3;4	1.5609E-29	47535	160513_QHF_FH_JSI10Kac_6	156.29	139.63			0.9611	1.0485	26.711	7	1	Median	1.4761	1.2886	NaN	1	1	Median	0.91859	1.0731	3.9084	2	0	Median	1.0713	1.0206	16.751	2	0	Median	0.72897	0.77092	43.486	2	0	Median	1052100000	527620000	524510000	28092000	7242800	20850000	388380000	189390000	198990000	394220000	192100000	202120000	241430000	138880000	102550000	24268	1282	22999	151627;151628;151629;151630;151631;151632;151633	205214;205215;205216;205217;205218;205219	205219			6	
IGRIEDVTPIPSDSTR	0	Unmodified	1754.9163	0.91627696	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.54	3	6	8					3	2	5	6	7	4	52.924	49.966	2;3	1.4226E-29	41822	160511_QHF_FH_JSI10i_3	194.12	177.1			1.2533	1.315	27.375	22	4	Median	1.9012	1.5804	14.414	5	0	Median	1.2073	1.4049	4.999	6	1	Median	1.2971	1.2572	13.006	7	3	Median	0.68926	0.75129	15.424	4	0	Median	7005900000	3035600000	3970300000	1387200000	558670000	828480000	2576000000	1112600000	1463400000	2314000000	978280000	1335700000	728800000	386060000	342730000	24269	1991	23000	151634;151635;151636;151637;151638;151639;151640;151641;151642;151643;151644;151645;151646;151647;151648;151649;151650;151651;151652;151653;151654;151655	205220;205221;205222;205223;205224;205225;205226;205227;205228;205229;205230;205231;205232;205233;205234;205235;205236;205237;205238;205239;205240;205241;205242;205243;205244;205245;205246;205247	205229			27	
IGRIEDVTPIPSDSTRR	0	Unmodified	1911.0174	0.017387984	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	2	By MS/MS	By matching			3	0			3							2	1			45.713	44.121	3;4	0.00018216	35998	160511_QHF_FH_JSI9i_3	75.97	61.716			1.7107	1.4084	7.364	3	1	Median	1.7767	1.4501	4.1286	2	1	Median	1.0987	1.2898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208770000	71457000	137310000	182990000	59151000	123840000	25780000	12306000	13475000	0	0	0	0	0	0	24270	1991	23001	151656;151657;151658	205248;205249	205248			2	
IGRPSETGIIGIIDPECR	0	Unmodified	1982.0255	0.025509829	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			76.797	75.37	3	8.9549E-06	61910	160511_QHF_FH_JSI9i_3	89.982	79.883			1.1756	1.1297	13.169	2	1	Median	1.2697	1.0292	NaN	1	0	Median	1.0886	1.2399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53026000	23773000	29253000	29502000	11135000	18367000	23525000	12638000	10887000	0	0	0	0	0	0	24271	2734	23002	151659;151660;151661	205250;205251;205252;205253;205254	205253			5	
IGSAIQR	0	Unmodified	743.42899	0.42898711	4249	Q96SW2	CRBN	Protein cereblon	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.214	13.973	2	0.050547	11564	160511_QHF_FH_JSI10i_1	42.773	0			0.93701	1.1142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93701	1.1142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	438270000	227480000	210780000	0	0	0	438270000	227480000	210780000	0	0	0	0	0	0	24272	4249	23003	151662	205255	205255			1	
IGSCTQQDVELHVQK	1	Unmodified	1740.8465	0.84648283	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	34.448	33.805	3	8.7105E-23	28651	160511_QHF_FH_JSI12i_3	182.1	169.89			1.0332	0.88345	40.217	6	3	Linear	0.46034	0.39048	NaN	1	1	Median	0.82997	1.0321	NaN	1	0	Median	0.67808	0.64997	35.313	2	1	Median	0.89878	0.95545	2.9901	2	1	Median	650990000	358820000	292170000	54860000	33319000	21541000	102790000	67463000	35327000	249610000	142630000	106990000	243730000	115410000	128310000	24273	1064	23004	151663;151664;151665;151666;151667;151668	205256;205257;205258;205259;205260;205261;205262;205263;205264	205264			9	
IGSESTKPPITFDK	2	Unmodified	1518.793	0.79297392	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.771	43.655	3	0.031145	38426	160511_QHF_FH_JSI11i_3	34.18	21.895			0.96246	0.93539	26.811	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2157	1.1306	NaN	1	0	Median	0.762	0.77385	NaN	1	0	Median	251980000	114950000	137020000	0	0	0	0	0	0	103010000	46163000	56843000	148970000	68789000	80181000	24274	3262	23005	151669;151670	205265;205266	205265			2	
IGSFTIQNVFPQSDGDSSK	1	Unmodified	2025.9643	0.96434936	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	83.055	82.921	2	4.919E-24	71945	160511_QHF_FH_JSI12i_3	141.46	119.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24275	723	23006	151671;151672;151673	205267;205268;205269	205268			3	
IGSGGFGLIYLAFPTNKPEK	2	Unmodified	2108.1306	0.13062683	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	91.643	85.007	3	1.1104E-06	44851	160513_QHF_FH_JSI9Kac_6	88.396	70.339			0.88424	0.78338	24.184	5	0	Median	0.88424	0.76953	NaN	1	0	Median	0.66406	0.78123	NaN	1	0	Median	1.0967	1.0205	37.396	2	0	Median	0.96884	1.0356	NaN	1	0	Median	968940000	476640000	492300000	266950000	139280000	127660000	244040000	145910000	98134000	373070000	155550000	217520000	84875000	35897000	48978000	24276	3379	23007	151674;151675;151676;151677;151678	205270;205271;205272;205273;205274;205275;205276;205277;205278	205275			9	
IGSGSFGTVYK	1	Unmodified	1114.5659	0.56587452	801	P04049	RAF1	RAF proto-oncogene serine/threonine-protein kinase	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	42.143	41.012	2	0.013554	36113	160511_QHF_FH_JSI10i_2	53.327	36.787			0.85273	1.0456	39.744	3	1	Median	1.5728	1.3872	NaN	1	0	Median	0.85273	1.0456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57476	0.63292	NaN	1	0	Median	82771000	44889000	37882000	27562000	11920000	15642000	33345000	20201000	13144000	0	0	0	21865000	12769000	9096100	24277	801	23008	151679;151680;151681;151682	205279;205280;205281	205280			3	
IGSGVER	0	Unmodified	716.3817	0.38170256	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1							1	1	2	2	7.7538	7.5403	2	0.027514	5290	160511_QHF_FH_JSI11i_2	53.554	8.8622			0.90527	0.94248	18.32	6	0	Median	1.612	1.3402	NaN	1	0	Median	0.79461	0.95966	NaN	1	0	Median	0.96478	0.95287	4.105	2	0	Median	0.79664	0.82109	7.639	2	0	Median	5486100000	2728900000	2757300000	1063400000	402670000	660730000	656780000	359470000	297310000	2251900000	1130900000	1121000000	1514100000	835810000	678240000	24278	1765	23009	151683;151684;151685;151686;151687;151688	205282	205282			1	
IGSGYDNVDIK	1	Unmodified	1179.5772	0.57716749	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.721	37.303	2	0.0015935	33327	160511_QHF_FH_JSI10i_1	62.466	25.909			1.2745	1.3177	30.098	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85887	1.0079	NaN	1	0	Median	1.3716	1.3337	NaN	1	0	Median	0.6982	0.73086	NaN	1	0	Median	699430000	360220000	339200000	0	0	0	235430000	121200000	114230000	267080000	124000000	143080000	196920000	115020000	81898000	24279	1882	23010	151689;151690;151691	205283;205284;205285;205286	205286			4	
IGSLASGNVR	0	Unmodified	972.53524	0.53524309	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			24.297	23.225	2	0.00036493	18525	160511_QHF_FH_JSI10i_3	76.827	34.228			0.51325	0.6106	44.757	2	0	Median	NaN	NaN	NaN	0	0	Median	0.51325	0.6106	44.757	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117710000	74117000	43591000	0	0	0	117710000	74117000	43591000	0	0	0	0	0	0	24280	4679	23011	151692;151693	205287;205288	205287			2	
IGSLIDVNQSK	1	Unmodified	1172.6401	0.6401021	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.86	4	4	4				3			3	4	3	5	47.429	44.605	2	3.1668E-18	38414	160511_QHF_FH_JSI11i_2	163.64	120.36			0.97646	1.0719	22.305	15	2	Median	1.5995	1.3442	13.726	3	0	Median	0.92834	1.1159	10.872	4	0	Median	1.0261	0.98959	10.978	3	0	Median	0.78051	0.83202	21.918	5	2	Median	2799300000	1331700000	1467700000	446210000	181480000	264720000	732750000	383080000	349670000	903270000	391100000	512170000	717110000	376000000	341110000	24281	1952;3963	23012	151694;151695;151696;151697;151698;151699;151700;151701;151702;151703;151704;151705;151706;151707;151708	205289;205290;205291;205292;205293;205294;205295;205296;205297;205298;205299;205300;205301;205302;205303;205304;205305;205306;205307;205308;205309;205310;205311;205312;205313;205314;205315;205316	205311			28	
IGSSLPQDDDAPKK	2	Unmodified	1469.7362	0.73618733	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.5	0.866	3		1							1	1	2		22.505	22.1	3	0.024063	18917	160511_QHF_FH_JSI9i_1	35.35	22.213			1.1634	1.2257	60.013	4	2	Median	3.8508	3.1689	NaN	1	1	Median	1.1586	1.3767	NaN	1	0	Median	0.98158	0.91908	24.295	2	1	Median	NaN	NaN	NaN	0	0	Median	221660000	65577000	156090000	100190000	16513000	83680000	45098000	21228000	23871000	76370000	27835000	48535000	0	0	0	24282	681	23013	151709;151710;151711;151712	205317;205318;205319	205319			2	
IGSSLYALGTQDSTDICK	1	Unmodified	1927.9197	0.91970735	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	64.984	64.353	2	1.1787E-06	58636	160511_QHF_FH_JSI12i_1	112.08	95.946			0.8643	0.85605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8643	0.85605	NaN	1	1	Median	12879000	8833100	4045900	0	0	0	0	0	0	0	0	0	12879000	8833100	4045900	24283	5437	23014	151713	205320	205320			1	
IGSTIDDTISK	1	Unmodified	1148.5925	0.5924832	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.481	34.877	2	0.00075852	30602	160511_QHF_FH_JSI9i_1	81.017	71.311			1.2763	1.2775	17.731	4	4	Median	1.6949	1.3632	NaN	1	1	Median	0.98495	1.1972	NaN	1	1	Median	1.6025	1.5557	NaN	1	1	Median	1.0165	1.0281	NaN	1	1	Median	904440000	479780000	424660000	177270000	79226000	98047000	274710000	161990000	112720000	270340000	131940000	138400000	182120000	106630000	75488000	24284	2558	23015	151714;151715;151716;151717	205321;205322;205323;205324	205324			4	
IGSTIFGERDYSK	1	Unmodified	1471.7307	0.73070802	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			43.267	41.708	3	0.0036685	34789	160511_QHF_FH_JSI10i_3	50.108	38.79			0.91657	0.88947	0.94681	2	0	Median	1.0998	0.89545	NaN	1	0	Median	0.76383	0.88354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113030000	62724000	50303000	60147000	28639000	31508000	52879000	34085000	18795000	0	0	0	0	0	0	24285	621	23016	151718;151719	205325;205326	205326			2	
IGSTSGAEAANK	1	Unmodified	1104.5411	0.54111633	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.2466	8.5136	2	0.0043145	6132	160511_QHF_FH_JSI9i_1	63.694	53.28			1.0562	0.8838	NaN	1	1	Median	1.0562	0.8838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79030000	33411000	45618000	79030000	33411000	45618000	0	0	0	0	0	0	0	0	0	24286	4936	23017	151720	205327	205327			1	
IGSVAPDTINNHVK	1	Unmodified	1463.7732	0.77324153	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	32.742	32.246	2;3	2.1835E-05	27178	160511_QHF_FH_JSI12i_3	89.231	77.085			0.88956	0.90811	22.76	5	0	Median	1.047	0.90705	NaN	1	0	Median	0.74418	0.90811	NaN	1	0	Median	0.74027	0.72344	37.977	2	0	Median	0.88956	0.91383	NaN	1	0	Median	647720000	345570000	302150000	48930000	26337000	22593000	83982000	45299000	38683000	230650000	120040000	110610000	284160000	153890000	130270000	24287	5316	23018	151721;151722;151723;151724;151725;151726	205328;205329;205330;205331;205332;205333	205331			6	
IGTAEPDYGALYEGR	0	Unmodified	1610.7577	0.75765105	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.502	54.844	2	0.00041067	49827	160511_QHF_FH_JSI12i_1	73.435	63.127			1.1697	1.224	28.934	4	0	Median	2.1048	1.751	NaN	1	0	Median	1.1233	1.3105	NaN	1	0	Median	1.2181	1.1431	NaN	1	0	Median	0.827	0.87363	NaN	1	0	Median	179220000	83031000	96184000	44795000	13537000	31258000	41078000	20408000	20670000	50707000	24792000	25915000	42636000	24295000	18341000	24288	1152	23019	151727;151728;151729;151730	205334;205335;205336;205337;205338;205339	205336			6	
IGTAEVEKPAGLLFQQPDLDSALQIAR	1	Unmodified	2879.5393	0.53927242	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		100.86	100.86	3	8.3511E-14	89863	160511_QHF_FH_JSI11i_3	85.849	76.262			0.96977	0.9171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96977	0.9171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57274000	30864000	26410000	0	0	0	0	0	0	57274000	30864000	26410000	0	0	0	24289	681	23020	151731	205340	205340			1	
IGTDIQDNK	1	Unmodified	1002.4982	0.49818889	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	20.133	17.305	2	1.6336E-06	14628	160511_QHF_FH_JSI9i_1	131.06	72.144			0.81759	0.87964	17.759	6	0	Median	1.382	1.1154	NaN	1	0	Median	0.82661	0.97423	6.1903	2	0	Median	0.80349	0.79086	6.7936	2	0	Median	0.65949	0.70438	NaN	1	0	Median	5587900000	2913300000	2674600000	1315000000	549330000	765620000	1496900000	792360000	704500000	1365500000	744410000	621090000	1410600000	827160000	583430000	24290	1051	23021	151732;151733;151734;151735;151736;151737	205341;205342;205343;205344;205345;205346;205347;205348	205348			8	
IGTILIQTNQLTGEPELHYLR	0	Unmodified	2408.3064	0.30635936	5082	Q9NWZ5	UCKL1	Uridine-cytidine kinase-like 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		88.873	88.873	3	3.355E-05	79307	160511_QHF_FH_JSI11i_3	63.184	59.156			1.1541	1.0849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1541	1.0849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35779000	14648000	21131000	0	0	0	0	0	0	35779000	14648000	21131000	0	0	0	24291	5082	23022	151738	205349;205350	205349			2	
IGTNQMAVCAK	1	Unmodified	1191.574	0.57401314	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.754	27.548	2	0.0091324	24387	160511_QHF_FH_JSI11i_1	58.699	34.669			2.1171	2.0159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1171	2.0159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39609000	15014000	24595000	0	0	0	0	0	0	39609000	15014000	24595000	0	0	0	24292	2518	23023	151739	205351	205351			1	
IGTVMTFL	0	Unmodified	880.47283	0.47282576	1336	P30046	DDT	D-dopachrome decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.41	5.06	6	5	7				1	2	1	3	8	8	3	94.08	91.933	1;2	0.0024001	83381	160511_QHF_FH_JSI9i_2	80.377	80.377			0.99122	1.0428	37.633	22	1	Median	1.6742	1.3925	3.8148	3	0	Median	0.82633	0.98043	5.25	8	0	Median	1.1417	1.0688	51.36	8	1	Median	0.60687	0.68024	2.4732	3	0	Plateau	1363100000	696380000	666680000	156990000	59110000	97882000	440570000	230000000	210570000	416860000	198650000	218220000	348630000	208610000	140020000	24293	1336	23024	151740;151741;151742;151743;151744;151745;151746;151747;151748;151749;151750;151751;151752;151753;151754;151755;151756;151757;151758;151759;151760;151761	205352;205353;205354;205355;205356;205357;205358;205359;205360;205361;205362;205363;205364;205365;205366;205367;205368;205369;205370;205371;205372;205373;205374;205375;205376;205377;205378;205379;205380;205381;205382;205383;205384;205385;205386	205375			30	
IGTVMTFL	0	Oxidation (M)	896.46774	0.46774038	1336	P30046	DDT	D-dopachrome decarboxylase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	14.8	0.4							1	4		1	1	1	2	80.546	70.07	2	0.0090157	35986	160513_QHF_FH_JSI9Kac_5	64.776	64.776			0.81571	0.90304	32.133	5	0	Median	1.7816	1.5072	NaN	1	0	Median	0.81571	0.96359	NaN	1	0	Median	0.90815	0.90304	NaN	1	0	Median	0.63461	0.69549	10.309	2	0	Median	44428000	24465000	19964000	7655300	2801600	4853700	10214000	5111400	5102400	17223000	10970000	6252900	9336800	5582200	3754500	24294	1336	23024	151762;151763;151764;151765;151766	205387;205388;205389	205387		979	3	
IGVDHVAR	0	Unmodified	865.477	0.47699993	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		12.974	12.974	3	0.0054276	10359	160511_QHF_FH_JSI11i_3	54.776	45.383			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295930000	0	295930000	0	0	0	0	0	0	295930000	0	295930000	0	0	0	24295	3232	23025	151767	205390	205390			1	
IGVDLIMK	1	Unmodified	887.51502	0.51502492	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	65.575	64.851	2	0.0034061	57482	160511_QHF_FH_JSI10i_2	72.789	42.177			0.9477	0.88819	19.459	5	0	Linear	1.4278	1.2098	NaN	1	0	Median	0.9477	1.188	NaN	1	0	Median	1.0959	1.0506	21.369	2	0	Median	0.72536	0.80517	NaN	1	0	Median	478640000	241160000	237480000	71176000	31846000	39329000	106900000	55413000	51485000	158370000	68860000	89514000	142190000	85043000	57147000	24296	120	23026	151768;151769;151770;151771;151772	205391;205392;205393;205394;205395	205395			5	
IGVFSKDK	2	Acetyl (K)	934.51238	0.51238239	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			50.888	40.44	2	0.039968	22593	160513_QHF_FH_JSI10Kac_4	51.854	28.426			1.7606	2.078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7606	2.078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13100000	5923300	7176700	0	0	0	13100000	5923300	7176700	0	0	0	0	0	0	24297	5658	23027	151773	205396	205396			1	
IGVFSYGSGLAATLYSLK	1	Unmodified	1845.9877	0.98765098	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			94.212	86.881	2	3.6494E-56	50684	160513_QHF_FH_JSI10Kac_6	200.16	178.29			0.8763	0.88673	33.129	2	0	Median	1.2849	1.1208	NaN	1	0	Median	0.59765	0.70155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121860000	64103000	57754000	76371000	33891000	42481000	45485000	30212000	15273000	0	0	0	0	0	0	24298	2170	23028	151774;151775	205397;205398	205398			2	
IGVHAFQQR	0	Unmodified	1054.5672	0.56721192	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	4	4	4	1	27.641	22.545	2;3	6.699E-08	18439	160511_QHF_FH_JSI10i_3	121.62	96.725			1.1372	1.0336	49.745	13	1	Median	1.2537	1.0277	2.1409	4	0	Median	0.76784	0.9014	10.55	4	0	Median	1.8482	1.7609	66.317	4	1	Median	0.65886	0.71918	NaN	1	0	Median	1168400000	509180000	659270000	407690000	185220000	222460000	532510000	247410000	285100000	217230000	70366000	146870000	11021000	6179700	4841400	24299	828	23029	151776;151777;151778;151779;151780;151781;151782;151783;151784;151785;151786;151787;151788	205399;205400;205401;205402;205403;205404;205405;205406;205407;205408;205409;205410;205411;205412;205413;205414;205415;205416;205417	205402			19	
IGVITNR	0	Unmodified	771.46029	0.46028724	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.76	6.37	3	4	4					4	2	4	5	4	4	23.747	19.894	2	0.0032732	16594	160511_QHF_FH_JSI10i_3	97.071	52.46			0.97628	1.0701	31.292	16	1	Median	1.6187	1.3719	14.643	4	0	Median	0.89898	0.98494	6.8724	4	1	Linear	1.1005	1.092	5.6724	4	0	Median	0.59193	0.60523	13.411	4	0	Median	9764900000	4950100000	4814900000	3249200000	1236500000	2012800000	3439200000	1895100000	1544100000	1519400000	772650000	746730000	1557100000	1045900000	511240000	24300	2013	23030	151789;151790;151791;151792;151793;151794;151795;151796;151797;151798;151799;151800;151801;151802;151803;151804;151805	205418;205419;205420;205421;205422;205423;205424;205425;205426;205427;205428;205429;205430;205431	205420			14	
IGVLDEGK	1	Unmodified	829.45453	0.45453316	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.84	4	4	1				3	1		2	4	4	3	32.662	29.225	2	0.00081956	26233	160511_QHF_FH_JSI10i_1	97.798	40.517			0.8654	0.95898	22.525	13	0	Median	1.5059	1.2318	2.1717	2	0	Median	0.82956	0.97504	4.8844	4	0	Median	0.94746	0.96016	13.462	4	0	Median	0.61459	0.65569	1.6541	3	0	Plateau	9977200000	5193500000	4783800000	2002400000	854840000	1147600000	2624300000	1301100000	1323200000	2601300000	1450800000	1150500000	2749300000	1586800000	1162500000	24301	1593	23031	151806;151807;151808;151809;151810;151811;151812;151813;151814;151815;151816;151817;151818	205432;205433;205434;205435;205436;205437;205438;205439;205440;205441;205442;205443;205444;205445;205446;205447;205448;205449;205450;205451;205452	205442			21	
IGVNQPK	1	Unmodified	754.43374	0.43373813	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							3	2	1	2	12.876	12.327	2	0.015049	9855	160511_QHF_FH_JSI10i_3	65.263	34.843			0.9337	1.0005	18.259	8	2	Median	1.5568	1.2397	17.523	3	1	Median	0.80283	0.9206	2.9417	2	1	Median	1.0181	1.0544	NaN	1	0	Median	0.84871	0.90829	6.5603	2	0	Median	3705400000	1724400000	1981000000	1424700000	527360000	897330000	1104600000	572720000	531930000	633200000	342580000	290620000	542910000	281790000	261120000	24302	2090	23032	151819;151820;151821;151822;151823;151824;151825;151826	205453;205454;205455;205456;205457;205458;205459;205460;205461	205454			9	
IGVPFPK	1	Unmodified	756.45341	0.45341094	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	2	3	1							1	2	2	1	52.591	51.999	2	0.013952	44996	160511_QHF_FH_JSI11i_2	66.994	50.067			1.0888	1.0695	11.68	6	0	Median	1.2032	1.024	NaN	1	0	Median	0.86432	1.0213	12.656	2	0	Median	1.0619	1.057	16.855	2	0	Median	1.2117	1.2208	NaN	1	0	Median	482170000	239070000	243100000	84168000	36483000	47685000	156060000	87667000	68389000	160040000	77037000	83003000	81909000	37883000	44025000	24303	4788	23033	151827;151828;151829;151830;151831;151832	205462;205463;205464;205465;205466;205467;205468;205469;205470;205471	205467			10	
IGVSSDSGSINPMSEGFK	1	Unmodified	1810.8407	0.84072875	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	65.103	64.345	2	9.086E-53	58424	160511_QHF_FH_JSI11i_1	218.31	199.18			1.1483	1.2156	18.727	8	1	Median	1.7816	1.5047	3.3293	2	0	Median	1.0277	1.2245	12.402	2	0	Median	1.2485	1.2116	11.828	2	1	Median	0.89616	0.94864	3.6608	2	0	Median	621250000	265370000	355880000	133590000	49777000	83812000	171620000	79542000	92076000	163470000	62301000	101170000	152570000	73746000	78823000	24304	1684	23034	151833;151834;151835;151836;151837;151838;151839;151840;151841	205472;205473;205474;205475;205476;205477;205478;205479;205480;205481;205482;205483;205484;205485;205486	205472			15	
IGVVGGSDFEK	1	Unmodified	1106.5608	0.56078914	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.48	3	4	1				3			3	3	3	2	45.889	42.32	2	2.4969E-05	38306	160511_QHF_FH_JSI11i_1	100.48	72.303			0.94627	1.0423	24.946	11	0	Median	1.6596	1.3906	19.835	3	0	Plateau	0.91201	1.0724	3.5009	3	0	Median	0.98871	0.97449	4.5027	3	0	Median	0.72246	0.79653	8.5687	2	0	Median	1690100000	775010000	915060000	345710000	127970000	217740000	537830000	253940000	283890000	639290000	286690000	352600000	167230000	106410000	60828000	24305	275	23035	151842;151843;151844;151845;151846;151847;151848;151849;151850;151851;151852	205487;205488;205489;205490;205491;205492;205493;205494;205495;205496;205497;205498;205499	205487			13	
IGWPHFK	1	Unmodified	883.47046	0.47045799	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	1	2	2	49.926	48.95	3	0.0081742	42760	160511_QHF_FH_JSI11i_3	50.039	38.671			0.90506	0.92327	25.105	7	4	Median	1.4033	1.1565	20.722	3	2	Median	0.90506	1.0599	NaN	1	0	Median	0.81443	0.74117	NaN	1	1	Median	0.74129	0.77652	18.776	2	1	Median	320410000	164860000	155550000	126120000	54824000	71294000	57164000	29962000	27201000	39391000	21060000	18330000	97735000	59011000	38724000	24306	549	23036	151853;151854;151855;151856;151857;151858;151859;151860	205500;205501;205502;205503;205504;205505;205506;205507;205508;205509;205510;205511;205512;205513;205514;205515;205516;205517;205518;205519;205520	205500			21	
IGWSLTTSGMLLGEEEFSYGYSLK	1	Unmodified	2667.2778	0.27782093	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			111.49	105.77	3	0.058632	62179	160513_QHF_FH_JSI10Kac_6	30.306	17.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24307	2161	23037	151861	205521	205521			1	
IGYHISLYSLSTSFPR	0	Unmodified	1839.9519	0.95193418	94	O00124	UBXN8	UBX domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	82.981	74.737	3	6.3445E-17	42148	160513_QHF_FH_JSI10Kac_6	139.58	121.35			1.1245	1.1528	28.373	4	0	Median	1.6387	1.3884	NaN	1	0	Median	0.79489	0.95714	NaN	1	0	Median	1.5831	1.4981	NaN	1	0	Median	0.79875	0.83424	NaN	1	0	Median	537070000	261380000	275690000	143180000	54396000	88780000	295700000	162880000	132820000	64375000	26753000	37622000	33815000	17348000	16467000	24308	94	23038	151862;151863;151864;151865	205522;205523;205524	205524			2	
IGYHLLYYLR	0	Unmodified	1309.7183	0.71829284	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	76.131	68.011	2;3	3.5022E-13	37493	160513_QHF_FH_JSI10Kac_6	157.91	140.24			0.9895	1.0472	27.283	6	0	Median	1.4349	1.2311	1.8722	2	0	Median	0.86954	1.0057	7.4256	2	0	Median	1.0982	1.0347	NaN	1	0	Median	0.56533	0.58944	NaN	1	0	Median	9080900000	4424600000	4656300000	1064900000	387030000	677840000	6292000000	3154600000	3137500000	984310000	396260000	588050000	739660000	486780000	252880000	24309	3028	23039	151866;151867;151868;151869;151870;151871	205525;205526;205527;205528;205529;205530;205531;205532;205533;205534;205535;205536;205537	205536			13	
IGYIYALLFVNK	1	Unmodified	1412.8068	0.80677349	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	5.85			5	1					11	5	4	5	3	96.428	90.152	2;3	9.7296E-42	84275	160511_QHF_FH_JSI10i_3	255.54	218.2			0.96496	0.88647	22.671	16	1	Median	1.0373	0.87865	9.5947	4	0	Median	0.6824	0.81037	11.077	4	0	Median	1.2063	1.1338	28.998	5	1	Median	0.90186	0.91807	13.491	3	0	Median	6694100000	3100300000	3593800000	1220900000	554850000	666080000	1418100000	687010000	731050000	2475600000	990390000	1485300000	1579400000	868010000	711440000	24310	380	23040	151872;151873;151874;151875;151876;151877;151878;151879;151880;151881;151882;151883;151884;151885;151886;151887;151888	205538;205539;205540;205541;205542;205543;205544;205545;205546;205547;205548;205549;205550;205551;205552;205553;205554;205555;205556;205557;205558;205559;205560;205561;205562;205563;205564	205540			27	
IGYLNDRVDELLEK	1	Unmodified	1675.8781	0.87810054	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			75.718	74.289	3	0.019592	62325	160511_QHF_FH_JSI10i_3	37.156	17.833			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24311	4637	23041	151889	205565	205565			1	
IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	1	Oxidation (M)	3582.6588	0.65881199	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.64	2	7	3							2	3	4	3	102.04	101.98	3;4	8.5168E-33	91152	160511_QHF_FH_JSI11i_3	136.14	131.04			0.95019	0.99273	19.011	12	0	Median	1.6369	1.416	1.4305	2	0	Median	0.77966	0.96693	7.3584	3	0	Plateau	1.0441	1.0229	9.1289	4	0	Median	0.85161	0.8728	7.4672	3	0	Plateau	3607700000	1876900000	1730800000	631410000	241280000	390130000	862200000	496430000	365770000	912960000	439430000	473530000	1201200000	699790000	501360000	24312	2072	23042	151890;151891;151892;151893;151894;151895;151896;151897;151898;151899;151900;151901	205566;205567;205568;205569;205570;205571;205572;205573;205574	205566		1732;1733	8	
IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK	1	Unmodified	3566.6639	0.66389736	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.87	6	8	5						3	3	6	6	7	101.78	100.62	3;4	6.4293E-59	90880	160511_QHF_FH_JSI10i_2	191.51	182.29			0.98608	1.0628	25.178	22	3	Median	1.6636	1.3697	19.029	3	1	Median	0.98608	1.1668	13.498	6	1	Median	1.0788	1.0696	11.046	6	0	Median	0.76313	0.80166	15.999	7	1	Median	21700000000	11011000000	10689000000	2696700000	1085000000	1611800000	5027700000	2699900000	2327800000	9568700000	4678500000	4890200000	4407200000	2548000000	1859200000	24313	2072	23042	151902;151903;151904;151905;151906;151907;151908;151909;151910;151911;151912;151913;151914;151915;151916;151917;151918;151919;151920;151921;151922;151923	205575;205576;205577;205578;205579;205580;205581;205582;205583;205584;205585;205586;205587;205588;205589;205590;205591;205592;205593;205594;205595;205596;205597;205598;205599;205600;205601	205594			26	
IGYQVTAMIGHTNVVVPR	0	Unmodified	1954.0459	0.045851341	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.4	5.2			1						4	1	2	2		76.206	69.803	3	1.2727E-24	36670	160513_QHF_FH_JSI9Kac_6	154.49	135.73			0.80866	0.90048	11.044	4	1	Median	1.2293	1.0334	NaN	1	0	Median	0.76158	0.90048	5.08	2	1	Median	0.8411	0.79631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	530710000	297110000	233610000	128740000	67457000	61288000	349770000	202840000	146930000	52201000	26814000	25388000	0	0	0	24314	4679	23043	151924;151925;151926;151927;151928	205602;205603;205604;205605;205606	205605			5	
IGYSSPLTLSDQSSK	1	Unmodified	1581.7886	0.78861683	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	3	2	56.756	55.963	2;3	7.2324E-10	50776	160511_QHF_FH_JSI11i_1	168.02	143.63			0.88939	0.97921	26.874	10	3	Median	1.5422	1.1107	8.5674	3	2	Plateau	0.7525	0.87582	13.977	3	1	Median	1.0413	1.0578	29.402	2	0	Median	0.61995	0.64923	8.079	2	0	Median	834950000	413340000	421610000	186070000	75035000	111040000	256810000	147840000	108970000	234740000	95660000	139080000	157330000	94805000	62528000	24315	418	23044	151929;151930;151931;151932;151933;151934;151935;151936;151937;151938;151939	205607;205608;205609;205610;205611;205612;205613;205614;205615;205616;205617;205618;205619;205620;205621;205622;205623;205624	205609			18	
IGYSSPQTLADQSSK	1	Unmodified	1580.7682	0.76821574	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	40.557	39.818	2;3	0.00029274	35213	160511_QHF_FH_JSI9i_1	99.669	78.205			0.84444	0.77947	37.286	3	3	Median	0.95421	0.77947	NaN	1	1	Median	0.84444	1.0075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45149	0.48325	NaN	1	1	Median	265630000	167280000	98351000	103800000	58928000	44873000	54860000	34636000	20224000	0	0	0	106970000	73715000	33254000	24316	707	23045	151940;151941;151942	205625;205626;205627	205627			3	
IHAAQKPYR	1	Acetyl (K)	1124.6091	0.60907674	4151	Q96K58	ZNF668	Zinc finger protein 668	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	22.237	14.553	3	1.3571E-05	8825	160513_QHF_FH_JSI10Kac_6	121.05	104.38			1.0355	1.0171	9.9163	4	0	Median	1.076	0.91818	NaN	1	0	Median	0.80071	0.96082	NaN	1	0	Median	1.1704	1.1377	NaN	1	0	Median	0.99646	1.0768	NaN	1	0	Median	70058000	38604000	31454000	7895700	3978000	3917600	32321000	19460000	12861000	14638000	6796700	7841300	15204000	8369000	6834600	24317	4151	23046	151943;151944;151945;151946	205628;205629;205630;205631;205632;205633	205632	3054		6	
IHAEDIVLR	0	Unmodified	1064.5978	0.59784335	5774				yes	no	0	0	0	0	By MS/MS	By MS/MS			8.5	6.5		2						2		3	1			66.412	60.655	2	0.0069192	53265	160511_QHF_FH_JSI10i_2	62.659	16.643	+		1.3049	1.1745	234.32	4	3	Median	0.19142	0.17019	225.15	3	2	Median	8.8961	11.011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131720000	52501000	79215000	61631000	40858000	20773000	70085000	11643000	58442000	0	0	0	0	0	0	24318	5774	23047	151947;151948;151949;151950	205634;205635;205636;205637	205637			4	
IHAENAIR	0	Unmodified	922.49846	0.49846366	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.62	0.484		3	5							1		4	3	10.139	9.981	2;3	0.00079566	7221	160511_QHF_FH_JSI12i_3	65.252	27.908			0.84899	0.87624	16.903	8	1	Median	1.3677	1.1934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2881	0.91302	19.275	4	1	Linear	0.84344	0.87045	4.5987	3	0	Plateau	1332600000	668650000	663940000	57199000	23540000	33659000	0	0	0	751190000	342790000	408400000	524210000	302330000	221890000	24319	3240	23048	151951;151952;151953;151954;151955;151956;151957;151958	205638;205639;205640;205641;205642;205643	205642			6	
IHAFVQDTTLSEPR	0	Unmodified	1612.8209	0.82092001	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.25	5.63			3						1			3	1	48.957	45.634	2;3	2.8744E-05	39217	160511_QHF_FH_JSI12i_3	80.96	65.116			1.1481	1.1181	4.3027	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2312	1.1664	2.0476	2	0	Median	1.0791	1.0874	NaN	1	0	Median	222900000	99212000	123690000	0	0	0	0	0	0	140300000	62357000	77944000	82600000	36855000	45745000	24320	3505	23049	151959;151960;151961;151962	205644;205645;205646	205646			3	
IHAGPITK	1	Unmodified	835.49159	0.49158736	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	15.356	14.983	2;3	0.0092959	11693	160511_QHF_FH_JSI12i_3	47.574	25.083			1.081	1.1053	11.745	4	0	Median	1.328	1.0659	NaN	1	0	Median	1.0098	1.1461	NaN	1	0	Median	0.95954	0.92267	NaN	1	0	Median	1.1572	1.2099	NaN	1	0	Median	2312000000	520690000	1791300000	92491000	39867000	52624000	229500000	89703000	139790000	852270000	176680000	675590000	1137700000	214440000	923300000	24321	2006	23050	151963;151964;151965;151966;151967;151968;151969	205647;205648;205649;205650	205650			4	
IHAIMSFLPIILNQLFK	1	Unmodified	1997.1536	0.15361088	3996	Q96BY6	DOCK10	Dedicator of cytokinesis protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.36	94.643	3	1.1572E-08	55692	160513_QHF_FH_JSI10Kac_6	118.13	112.74			0.65569	0.78854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65569	0.78854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145610000	91769000	53837000	0	0	0	145610000	91769000	53837000	0	0	0	0	0	0	24322	3996	23051	151970	205651;205652	205651			2	
IHALTITWALPPQQQHYR	0	Unmodified	2172.1592	0.15924161	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	75.935	67.701	3;4	2.4824E-08	36131	160513_QHF_FH_JSI9Kac_6	113.69	108.68			1.3825	1.4	17.456	9	1	Median	1.451	1.2469	3.9978	2	0	Median	1.0029	1.1746	21.418	3	0	Median	1.7483	1.6926	12.129	2	0	Median	1.3844	1.4743	7.3116	2	1	Median	1043800000	455020000	588760000	246920000	104350000	142580000	541950000	251570000	290390000	114240000	45710000	68533000	140660000	53393000	87263000	24323	387	23052	151971;151972;151973;151974;151975;151976;151977;151978;151979	205653;205654;205655;205656;205657;205658;205659;205660;205661	205656			7	
IHALTSENTNLK	1	Unmodified	1339.7096	0.70957864	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.568	24.543	2	0.05409	20309	160511_QHF_FH_JSI12i_3	43.282	33.849			1.3828	1.4222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3828	1.4222	NaN	1	1	Median	23684000	9403700	14280000	0	0	0	0	0	0	0	0	0	23684000	9403700	14280000	24324	4561	23053	151980	205662	205662			1	
IHALTSLK	1	Unmodified	881.53345	0.53345218	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.514	24.489	3	0.018798	20284	160511_QHF_FH_JSI12i_3	38.962	21.723			1.6595	1.7155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6595	1.7155	NaN	1	1	Median	25258000	15591000	9667200	0	0	0	0	0	0	0	0	0	25258000	15591000	9667200	24325	2434	23054	151981	205663	205663			1	
IHAYSQLLESYR	0	Unmodified	1478.7518	0.75177781	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.03		1	6						3	2	2	3	3	55.481	52.162	2;3	4.9659E-12	45820	160511_QHF_FH_JSI11i_3	134.3	115.2			0.88065	0.9341	19.322	10	1	Median	1.2531	1.0373	9.0066	2	0	Median	0.7756	0.92708	2.7797	2	1	Median	1.0523	0.99291	3.8568	3	0	Plateau	0.65724	0.67647	12.553	3	0	Median	1218600000	661130000	557510000	115030000	53459000	61574000	245180000	128380000	116800000	405850000	220090000	185770000	452580000	259210000	193370000	24326	2598	23055	151982;151983;151984;151985;151986;151987;151988;151989;151990;151991	205664;205665;205666;205667;205668;205669;205670;205671;205672;205673;205674;205675;205676	205666			12	
IHCPLLAGSALITFDDPK	1	Unmodified	1967.0186	0.018633537	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.183	87.051	3	0.02391	75583	160511_QHF_FH_JSI12i_3	30.072	19.605			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24327	2099	23056	151992	205677	205677			1	
IHDENLRK	1	Unmodified	1023.5461	0.54614213	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.8252	5.9208	3	0.0018507	3734	160511_QHF_FH_JSI11i_3	60.478	31.004			0.63922	0.65308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63922	0.65308	NaN	1	0	Median	253080000	153960000	99125000	0	0	0	0	0	0	0	0	0	253080000	153960000	99125000	24328	660	23057	151993;151994	205678;205679	205678			2	
IHDPQLLTER	0	Unmodified	1220.6513	0.65133548	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		31.777	30.987	2	0.028793	26180	160511_QHF_FH_JSI11i_2	40.067	19.367			0.99052	0.98525	5.049	3	0	Plateau	1.0536	0.91439	NaN	1	0	Median	0.73092	0.91733	NaN	1	0	Median	0.99052	0.99952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	326320000	181730000	144590000	77910000	37292000	40619000	106010000	63665000	42345000	142400000	80774000	61626000	0	0	0	24329	1064	23058	151995;151996;151997	205680	205680			1	
IHEATGMPAGK	1	Unmodified	1110.5492	0.5491786	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	13.171	12.607	2	0.0015454	9821	160511_QHF_FH_JSI11i_2	62.823	51.659			1.2388	1.2801	51.54	4	1	Median	1.5077	1.2796	NaN	1	0	Median	1.2042	1.4671	NaN	1	0	Median	1.2744	1.2805	NaN	1	0	Median	0.43076	0.48172	NaN	1	1	Median	332800000	164740000	168050000	66924000	24797000	42128000	85183000	48778000	36405000	108320000	44784000	63536000	72368000	46384000	25984000	24330	2676	23059	151998;151999;152000;152001	205681;205682;205683;205684	205683			4	
IHEATGMPAGK	1	Oxidation (M)	1126.5441	0.54409322	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	13.161	12.596	3	0.018468	10287	160511_QHF_FH_JSI10i_2	32.329	25.067			0.9366	0.964	60.825	4	0	Median	0.76843	0.66084	NaN	1	0	Median	1.1416	1.4062	NaN	1	0	Median	0.50031	0.50933	NaN	1	0	Median	1.6172	1.8399	NaN	1	0	Median	197810000	98182000	99627000	43959000	22709000	21249000	46287000	20899000	25388000	59050000	34453000	24596000	48513000	20120000	28393000	24331	2676	23059	152002;152003;152004;152005	205685	205685		2098	1	
IHEGCEEPATHNALAK	1	Unmodified	1775.8261	0.82608174	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	4	2	16.188	15.978	2;3;4	6.049E-06	13008	160511_QHF_FH_JSI11i_3	107.5	91.612			1.2931	1.2725	24.923	7	1	Median	2.3429	1.9676	NaN	1	0	Median	1.4327	1.7667	NaN	1	1	Median	1.3542	1.1651	14.173	3	0	Plateau	1.2482	1.259	1.5088	2	0	Median	1023000000	482090000	540930000	22693000	9548900	13144000	46957000	18309000	28648000	425310000	204660000	220650000	528070000	249570000	278490000	24332	2155	23060	152006;152007;152008;152009;152010;152011;152012;152013	205686;205687;205688;205689;205690;205691;205692;205693;205694;205695	205688			10	
IHEMLQPGQDQ	0	Unmodified	1294.5976	0.59758535	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	28.572	27.663	2	1.3333E-05	23868	160511_QHF_FH_JSI9i_2	106.6	101.99			1.1083	1.1232	32.609	4	1	Median	1.6079	1.4147	NaN	1	0	Median	0.72372	0.89171	NaN	1	0	Median	1.6036	1.5948	NaN	1	1	Median	0.76602	0.83175	NaN	1	0	Median	102580000	48008000	54570000	32445000	14638000	17807000	24807000	13086000	11722000	18327000	5271600	13055000	26999000	15013000	11985000	24333	4360	23061	152014;152015;152016;152017	205696;205697;205698;205699;205700;205701;205702;205703;205704	205699			9	
IHEPIMLK	1	Unmodified	979.55247	0.55247306	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	3	4	36.482	35.673	2;3	0.00084375	31228	160511_QHF_FH_JSI10i_2	71.501	62.287			1.0159	1.021	19.954	12	0	Median	1.3323	1.113	39.003	2	0	Median	0.80181	0.99402	14.895	3	0	Median	1.0476	1.0487	8.3714	3	0	Median	0.91694	0.97696	26.313	4	0	Median	2215600000	1104500000	1111100000	274150000	129490000	144660000	404260000	207780000	196480000	848060000	420080000	427980000	689150000	347160000	341990000	24334	2502	23062	152018;152019;152020;152021;152022;152023;152024;152025;152026;152027;152028;152029	205705;205706;205707;205708;205709;205710;205711;205712;205713;205714;205715;205716;205717;205718;205719;205720;205721;205722;205723	205718			19	
IHEPIMLK	1	Oxidation (M)	995.54739	0.54738768	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	32.292	30.969	3	0.017682	26179	160511_QHF_FH_JSI12i_2	34.253	27.033			0.61382	0.69257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61382	0.69257	NaN	1	0	Median	29850000	16990000	12860000	0	0	0	0	0	0	0	0	0	29850000	16990000	12860000	24335	2502	23062	152030	205724	205724		1978	1	
IHETIESINQLK	1	Unmodified	1423.7671	0.76709352	3908	Q92925;Q6STE5	SMARCD2;SMARCD3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		43.989	43.155	3	0.0020768	37118	160511_QHF_FH_JSI11i_2	56.087	49.609			0.49796	0.88615	41.027	3	2	Plateau	0.49796	0.42266	NaN	1	1	Median	0.37678	0.46324	NaN	1	1	Median	0.89069	0.89656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133110000	71597000	61508000	29660000	18171000	11489000	34283000	24780000	9502500	69163000	28646000	40517000	0	0	0	24336	3908	23063	152031;152032;152033	205725;205726;205727	205726			2	
IHETIETINQLK	1	Unmodified	1437.7827	0.78274359	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	44.95	43.986	2;3	0.015231	38510	160511_QHF_FH_JSI10i_2	35.793	27.064			1.3712	1.42	23.557	5	1	Median	1.6058	1.42	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5087	1.5728	13.1	2	0	Median	0.94233	1.0599	20.448	2	1	Median	194460000	87572000	106890000	32882000	19169000	13712000	0	0	0	98932000	35395000	63537000	62649000	33007000	29642000	24337	4093	23064	152034;152035;152036;152037;152038;152039	205728;205729;205730;205731	205731			3	
IHETNLK	1	Unmodified	853.46577	0.46576654	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	7.9359	7.4976	2;3	0.014211	5300	160511_QHF_FH_JSI9i_2	37.646	17.091			0.98677	1.0653	8.9369	7	0	Median	1.2787	1.0704	NaN	1	0	Median	0.7934	0.98069	11.7	2	0	Median	0.97974	0.98398	2.3027	2	0	Median	1.0152	1.1418	4.9155	2	0	Median	1744700000	907700000	837040000	220840000	99261000	121580000	459890000	230910000	228980000	571130000	319700000	251430000	492880000	257820000	235060000	24338	4315	23065	152040;152041;152042;152043;152044;152045;152046	205732;205733;205734;205735;205736	205732			5	
IHETNLKK	2	Unmodified	981.56073	0.56072956	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1		By MS/MS		By matching	3	0			2								1		1	5.884	5.6837	3	0.014845	3704	160511_QHF_FH_JSI10i_3	31.074	9.61			0.93066	1.0179	19.34	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0019	1.167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86445	0.88775	NaN	1	0	Median	302560000	193060000	109500000	0	0	0	121620000	69301000	52324000	0	0	0	180930000	123760000	57177000	24339	4315	23066	152047;152048	205737	205737			1	
IHFELGK	1	Unmodified	842.46504	0.46503826	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	37.948	37.297	3	0.002436	31431	160511_QHF_FH_JSI12i_3	70.912	29.41			0.98962	0.92316	10.985	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.77126	0.91553	10.408	2	1	Median	0.90998	0.8648	NaN	1	0	Median	1.027	1.0711	NaN	1	0	Median	89922000	40091000	49832000	0	0	0	24947000	12507000	12440000	26769000	11861000	14907000	38207000	15723000	22485000	24340	3482	23067	152049;152050;152051;152052	205738;205739;205740;205741;205742;205743;205744	205743			7	
IHFFLSK	1	Unmodified	890.50142	0.50142377	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.75		3	9						4	5	4	4	3	54.754	51.381	2;3	0.00024875	27426	160513_QHF_FH_JSI9Kac_6	102.71	71.424			0.88523	0.87845	29.065	13	2	Median	0.93493	0.76467	9.0461	4	1	Median	0.77113	0.91113	4.9092	4	0	Median	1.0543	1.0026	56.602	3	1	Plateau	1.0043	1.0562	9.536	2	0	Median	8712100000	3971800000	4740300000	2029100000	902040000	1127000000	2282500000	1190100000	1092400000	1963800000	916240000	1047600000	2436600000	963400000	1473200000	24341	1444	23068	152053;152054;152055;152056;152057;152058;152059;152060;152061;152062;152063;152064;152065;152066;152067;152068	205745;205746;205747;205748;205749;205750;205751;205752;205753;205754;205755;205756;205757;205758;205759;205760;205761;205762;205763;205764;205765;205766;205767;205768;205769;205770;205771;205772;205773;205774;205775;205776;205777;205778;205779;205780;205781;205782;205783;205784;205785;205786;205787;205788;205789;205790;205791;205792;205793;205794;205795;205796;205797;205798;205799;205800;205801;205802;205803;205804	205788			60	
IHFFLSKK	2	Acetyl (K)	1060.607	0.60695147	1444	P35659	DEK	Protein DEK	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		65.063	56.113	3	0.02567	30763	160513_QHF_FH_JSI10Kac_6	42.599	25.125			0.34887	0.33734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34887	0.33734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36247000	21399000	14847000	0	0	0	5381000	0	5381000	30866000	21399000	9466200	0	0	0	24342	1444	23069	152069;152070	205805;205806	205806	1427		2	
IHFGQITSNQMLVPVIEK	1	Unmodified	2053.103	0.10303187	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.928	21.719	6	0.060226	18026	160511_QHF_FH_JSI12i_2	15.942	0			0.46466	0.53026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46466	0.53026	NaN	1	1	Median	35216000	25280000	9935700	0	0	0	0	0	0	0	0	0	35216000	25280000	9935700	24343	5451	23070	152071	205807	205807			1	
IHFHNLQGEK	1	Unmodified	1221.6255	0.62545508	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.504	23.183	3	0.050383	18782	160511_QHF_FH_JSI9i_3	14.687	9.893			0.30612	0.25493	NaN	1	0	Median	0.30612	0.25493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74012000	50238000	23775000	74012000	50238000	23775000	0	0	0	0	0	0	0	0	0	24344	3700	23071	152072	205808	205808			1	
IHFIEAQDLQGK	1	Unmodified	1397.7303	0.73031409	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	2	2	4	3	50.747	49.346	2;3	5.0934E-09	43396	160511_QHF_FH_JSI9i_2	115.33	96.227			1.0704	1.028	19.345	11	2	Median	1.2166	1.0628	4.7093	2	0	Median	0.86519	1.0463	32.349	2	1	Median	0.85009	1.0994	20.41	4	1	Linear	1.0968	1.1159	8.706	3	0	Plateau	1353500000	639980000	713550000	108840000	62298000	46542000	129810000	63468000	66347000	519160000	231810000	287350000	595710000	282410000	313310000	24345	6	23072	152073;152074;152075;152076;152077;152078;152079;152080;152081;152082;152083	205809;205810;205811;205812;205813;205814;205815;205816;205817;205818;205819;205820;205821;205822;205823;205824;205825;205826	205815			18	
IHFKPPK	2	Acetyl (K)	907.52797	0.52797287	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		37.414	27.933	3	0.022139	15536	160513_QHF_FH_JSI11Kac_6	52.636	32.85			1.3153	1.2357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3153	1.2357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10161000	4335600	5825600	0	0	0	0	0	0	10161000	4335600	5825600	0	0	0	24346	2842	23073	152084	205827	205827	2694		1	
IHFKPPK	2	Unmodified	865.51741	0.51740818	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				18.875	17.673	3	0.030107	14230	160511_QHF_FH_JSI9i_3	40.103	30.889			1.052	0.84992	NaN	1	1	Median	1.052	0.84992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83169000	41822000	41347000	83169000	41822000	41347000	0	0	0	0	0	0	0	0	0	24347	2842	23073	152085	205828	205828			1	
IHFKPPKNE	2	Unmodified	1108.6029	0.60292873	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			19.748	18.562	3	0.049244	15383	160511_QHF_FH_JSI10i_3	33.229	25.583			0.96402	0.93789	46.629	2	0	Median	1.6069	1.3042	NaN	1	0	Median	0.57833	0.67446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73683000	34901000	38782000	35933000	11550000	24383000	37750000	23351000	14399000	0	0	0	0	0	0	24348	2842	23074	152086;152087	205829	205829			1	
IHFPDFSTR	0	Unmodified	1118.5509	0.55089316	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	55.678	54.842	3	5.0099E-06	48431	160511_QHF_FH_JSI11i_3	106.42	98.777			1.0576	1.0044	3.6946	4	0	Median	1.2606	1.0017	NaN	1	0	Median	0.84349	0.96998	NaN	1	0	Median	1.0719	1.0071	NaN	1	0	Median	1.0434	1.0606	NaN	1	0	Median	387310000	178540000	208770000	51190000	22193000	28997000	71928000	36366000	35562000	145390000	62885000	82509000	118800000	57093000	61708000	24349	540	23075	152088;152089;152090;152091;152092	205830;205831;205832;205833;205834;205835;205836;205837	205831			8	
IHFPLATYAPVISAEK	1	Unmodified	1755.956	0.95595693	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.36		9	26						9	12	10	7	15	83.866	81.573	2;3;4	4.4617E-40	69817	160511_QHF_FH_JSI10i_3	203.11	181.74			0.9711	0.9592	29.155	38	16	Median	1.1133	0.95079	35.553	11	4	Median	0.87078	1.0341	29.831	9	4	Median	0.99258	0.94975	29.055	7	3	Median	0.95882	0.9601	23.756	11	5	Median	60653000000	25815000000	34838000000	11058000000	4488400000	6569600000	11509000000	5593000000	5915600000	17575000000	7229900000	10345000000	20511000000	8503800000	12007000000	24350	2073;2074;4359	23076	152093;152094;152095;152096;152097;152098;152099;152100;152101;152102;152103;152104;152105;152106;152107;152108;152109;152110;152111;152112;152113;152114;152115;152116;152117;152118;152119;152120;152121;152122;152123;152124;152125;152126;152127;152128;152129;152130;152131;152132;152133;152134;152135;152136	205838;205839;205840;205841;205842;205843;205844;205845;205846;205847;205848;205849;205850;205851;205852;205853;205854;205855;205856;205857;205858;205859;205860;205861;205862;205863;205864;205865;205866;205867;205868;205869;205870;205871;205872;205873;205874;205875;205876;205877;205878;205879;205880;205881;205882;205883;205884;205885;205886;205887;205888;205889;205890;205891;205892;205893;205894;205895;205896;205897;205898;205899;205900;205901;205902;205903;205904;205905;205906;205907;205908;205909;205910;205911;205912;205913;205914;205915;205916;205917;205918;205919;205920;205921;205922;205923;205924;205925;205926;205927;205928;205929;205930;205931;205932;205933;205934;205935;205936;205937;205938;205939;205940;205941;205942;205943;205944;205945;205946;205947;205948;205949;205950;205951;205952;205953;205954;205955;205956;205957;205958;205959;205960;205961;205962;205963;205964;205965;205966;205967;205968;205969;205970;205971;205972;205973;205974;205975;205976;205977;205978;205979;205980;205981;205982;205983;205984;205985;205986;205987;205988;205989;205990;205991;205992;205993;205994;205995;205996;205997	205875			160	
IHFVPGWDCHGLPIEIK	1	Unmodified	2017.0244	0.024387617	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	86.544	86.468	4	0.0012392	74759	160511_QHF_FH_JSI12i_3	56.746	50.765			1.1584	1.1219	28.774	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98703	0.91532	NaN	1	0	Median	1.3595	1.375	NaN	1	1	Median	64640000	27546000	37094000	0	0	0	0	0	0	13267000	7719600	5547300	51374000	19826000	31547000	24351	4983	23077	152137;152138	205998;205999	205999			1	
IHGALLILNELVR	0	Unmodified	1459.8875	0.88748343	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	86.561	78.816	3	4.8906E-06	43074	160513_QHF_FH_JSI9Kac_6	97.214	82.957			0.76974	0.65386	77.051	5	3	Median	0.76974	0.65386	NaN	1	0	Median	0.81727	0.95863	96.642	2	2	Median	1.4489	1.3927	NaN	1	0	Median	0.27473	0.28764	NaN	1	1	Median	293540000	161170000	132370000	42335000	27356000	14979000	158940000	82805000	76136000	71702000	35368000	36334000	20566000	15645000	4920100	24352	1535	23078	152139;152140;152141;152142;152143	206000;206001;206002;206003;206004;206005	206002			6	
IHGAYSSEK	1	Unmodified	990.47706	0.47705951	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	1	4	5.9887	5.8243	2;3	0.0019951	3447	160511_QHF_FH_JSI12i_3	66.621	41.699			0.81637	0.90262	23.59	5	1	Median	NaN	NaN	NaN	0	0	Median	0.67334	0.82648	NaN	1	0	Median	1.4574	1.3552	NaN	1	0	Median	0.81637	0.90262	18.596	3	1	Median	856250000	369930000	486320000	0	0	0	39827000	22108000	17719000	219000000	71175000	147830000	597430000	276650000	320780000	24353	1463	23079	152144;152145;152146;152147;152148;152149	206006;206007;206008;206009;206010	206008			5	
IHGFTVNQVTSVPELFLTAVK	1	Unmodified	2299.2576	0.25761826	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	101.57	101.53	3	4.067E-18	88228	160511_QHF_FH_JSI12i_3	139.11	133.66			0.89575	0.83218	19.332	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0002	1.1544	NaN	1	1	Median	0.83813	0.78595	NaN	1	0	Median	0.95733	0.98702	NaN	1	1	Median	1082800000	532040000	550810000	0	0	0	179580000	81308000	98274000	400210000	222400000	177810000	503060000	228330000	274720000	24354	2900	23080	152150;152151;152152;152153	206011;206012;206013;206014;206015	206015			5	
IHGHLYVNK	1	Unmodified	1079.5876	0.58761301	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.481	13.554	3	0.046869	10517	160511_QHF_FH_JSI12i_3	40.724	37.746			1.6442	1.6648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6442	1.6648	NaN	1	0	Median	41761000	13323000	28439000	0	0	0	0	0	0	0	0	0	41761000	13323000	28439000	24355	4222	23081	152154	206016	206016			0	
IHGIIAEENK	1	Unmodified	1122.6033	0.60332266	3016	Q66K14	TBC1D9B	TBC1 domain family member 9B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.371	20.372	3	0.034989	16658	160511_QHF_FH_JSI12i_3	23.378	15.729			1.1736	1.2483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1736	1.2483	NaN	1	0	Median	20835000	10097000	10738000	0	0	0	0	0	0	0	0	0	20835000	10097000	10738000	24356	3016	23082	152155	206017	206017			1	
IHGLILLGR	0	Unmodified	990.63383	0.63383493	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	66.317	57.204	3	0.00015362	31324	160513_QHF_FH_JSI10Kac_6	89.296	28.614			0.98601	1.0592	29.443	4	1	Median	1.3471	1.1577	NaN	1	0	Median	0.94631	1.1098	NaN	1	0	Median	1.0274	1.0109	NaN	1	0	Median	0.55598	0.61218	NaN	1	1	Median	95928000	47622000	48306000	12704000	5657900	7045800	49582000	22225000	27357000	25563000	15230000	10333000	8079000	4508500	3570500	24357	719	23083	152156;152157;152158;152159	206018;206019;206020	206020			3	
IHGTEEGQQILK	1	Unmodified	1351.7096	0.70957864	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.6	5.2		4						1		1	2	2		26.858	24.281	3	0.00055813	20407	160511_QHF_FH_JSI11i_2	56.936	47.932			0.91921	0.91834	72.418	5	3	Median	3.479	3.0746	NaN	1	1	Median	0.87478	1.0768	85.204	2	2	Median	0.78763	0.76589	25.673	2	0	Median	NaN	NaN	NaN	0	0	Median	233770000	114190000	119570000	31024000	7746200	23278000	80100000	46039000	34061000	122640000	60408000	62233000	0	0	0	24358	2587	23084	152160;152161;152162;152163;152164	206021;206022;206023;206024;206025	206022			5	
IHGTEEGQQILKQPVSER	1	Acetyl (K)	2090.0756	0.075631144	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		53.562	42.804	3	0.0035914	23705	160513_QHF_FH_JSI11Kac_5	62.203	45.709			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1835000	1835000	0	0	0	0	0	0	0	1835000	1835000	0	0	0	0	24359	2587	23085	152165	206026	206026	2570		1	
IHGVGFK	1	Unmodified	756.42826	0.42825883	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	17.451	16.905	2	0.049359	13746	160511_QHF_FH_JSI11i_3	43	26.073			0.81494	0.88029	39.716	4	0	Median	1.8731	1.4938	NaN	1	0	Median	0.77291	0.90291	NaN	1	0	Median	0.58665	0.56657	NaN	1	0	Median	0.85926	0.85824	NaN	1	0	Median	2153100000	968160000	1185000000	432270000	135930000	296340000	244160000	132210000	111950000	623850000	295650000	328200000	852830000	404370000	448460000	24360	2035	23086	152166;152167;152168;152169	206027;206028;206029;206030;206031	206027			5	
IHHTVEEK	1	Unmodified	991.50869	0.50869399	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	4.5531	4.6148	2;3	0.0003188	2120	160511_QHF_FH_JSI12i_3	90.657	67.228			1.9779	1.5858	27.294	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1465	1.996	NaN	1	0	Median	1.5724	1.6052	34.255	2	1	Median	2601700000	1024600000	1577100000	0	0	0	0	0	0	805550000	275110000	530450000	1796100000	749450000	1046700000	24361	5380	23087	152170;152171;152172	206032;206033;206034;206035;206036	206035			5	
IHIDLPNEQAR	0	Unmodified	1304.6837	0.68369824	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	45.913	45.12	2;3	8.3746E-06	38503	160511_QHF_FH_JSI12i_3	84.687	78.393			1.2726	1.202	30.199	6	1	Median	1.2858	1.0909	NaN	1	0	Median	1.916	2.146	NaN	1	0	Median	1.2241	1.202	4.9486	2	0	Median	0.98376	1.0479	27.882	2	1	Median	1367900000	581210000	786730000	164820000	72696000	92124000	22035000	10419000	11616000	357560000	146540000	211020000	823520000	351560000	471970000	24362	2006	23088	152173;152174;152175;152176;152177;152178	206037;206038;206039;206040;206041;206042	206042			4	
IHIFAQQNDQFQK	1	Unmodified	1615.8107	0.81068967	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	1	2	1	45.369	44.413	2;3	9.3448E-16	36500	160511_QHF_FH_JSI9i_3	155.48	145.69			1.2357	0.91118	27.076	5	2	Linear	1.5706	1.3008	34.802	2	1	Median	0.7178	0.81535	NaN	1	0	Median	1.22	1.1522	15.884	2	1	Median	NaN	NaN	NaN	0	0	Median	685360000	311840000	373520000	158870000	57801000	101070000	164660000	110430000	54238000	361830000	143610000	218220000	0	0	0	24363	3050	23089	152179;152180;152181;152182;152183;152184;152185	206043;206044;206045;206046;206047;206048;206049;206050;206051;206052	206048			10	
IHIFSSFFYK	1	Unmodified	1287.6652	0.66519463	4601	Q9GZR1	SENP6	Sentrin-specific protease 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.972	71.687	3	4.79E-05	39150	160513_QHF_FH_JSI11Kac_6	72.275	62.432			0.94804	0.98791	31.257	4	0	Median	0.85113	0.73687	NaN	1	0	Median	1.2799	1.5354	NaN	1	0	Median	0.89906	0.89813	NaN	1	0	Median	0.99969	1.0867	NaN	1	0	Median	128950000	66159000	62791000	46400000	22800000	23600000	31489000	14526000	16963000	34916000	21131000	13785000	16145000	7701400	8443500	24364	4601	23090	152186;152187;152188;152189	206053;206054;206055;206056;206057	206053			5	
IHIMPSMNPDGFEAVK	1	Unmodified	1784.859	0.85896177	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	70.623	70.26	2;3	0.0001094	60925	160511_QHF_FH_JSI12i_3	68.14	62.597			1.0584	1.0133	22.015	4	1	Median	1.0996	0.97895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9542	0.90852	NaN	1	0	Median	1.2532	1.2516	24.999	2	0	Median	341080000	183100000	157990000	36544000	18887000	17658000	0	0	0	126780000	73093000	53690000	177760000	91117000	86640000	24365	1052	23091	152190;152191;152192;152193	206058;206059;206060;206061	206061			3	
IHIPEPDLR	0	Unmodified	1088.5978	0.59784335	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	2	4	4	50.277	49.662	3	0.010058	42220	160511_QHF_FH_JSI12i_3	40.352	26.773			1.1294	1.1306	28.18	8	5	Median	2.7552	2.3929	NaN	1	1	Median	0.9009	1.0848	NaN	1	0	Median	1.1878	1.0737	13.737	3	2	Median	1.0498	1.1782	9.1489	3	2	Plateau	209930000	98264000	111660000	6191600	1706300	4485400	26566000	15946000	10620000	82336000	37970000	44366000	94835000	42642000	52193000	24366	2134	23092	152194;152195;152196;152197;152198;152199;152200;152201;152202;152203;152204	206062;206063;206064;206065;206066;206067;206068;206069;206070;206071	206071			10	
IHIPFISK	1	Unmodified	953.56984	0.56983769	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	0.3		1	9							3	4	1	2	69.07	68.141	2;3	0.0002529	60091	160511_QHF_FH_JSI11i_3	85.212	80.855			0.96941	1.0038	4.8489	7	0	Median	1.2083	0.97305	4.3987	2	0	Median	0.91134	1.0422	2.9551	2	0	Median	1.083	1.014	NaN	1	0	Median	0.94552	0.94364	1.5912	2	0	Median	1244900000	598030000	646890000	323640000	144850000	178780000	208490000	117920000	90569000	225810000	99566000	126250000	486980000	235690000	251290000	24367	1943	23093	152205;152206;152207;152208;152209;152210;152211;152212;152213;152214	206072;206073;206074;206075;206076;206077;206078;206079;206080;206081;206082;206083;206084;206085;206086;206087;206088;206089;206090;206091;206092;206093;206094;206095;206096;206097;206098;206099;206100;206101;206102;206103;206104;206105;206106;206107;206108;206109;206110;206111;206112;206113;206114;206115;206116;206117;206118;206119;206120;206121	206075			50	
IHIPGGLSPESK	1	Unmodified	1233.6717	0.67173657	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			4								1	1	2	44.737	44.227	2;3	0.0029885	38712	160511_QHF_FH_JSI11i_3	36.847	32.83			0.96908	0.98099	6.1236	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85331	0.9946	NaN	1	0	Median	0.97011	0.90305	NaN	1	0	Median	1.0134	1.006	5.5043	2	0	Median	318030000	161350000	156690000	0	0	0	28179000	14539000	13640000	85674000	44395000	41279000	204180000	102410000	101770000	24368	1896	23094	152215;152216;152217;152218	206122;206123;206124	206122			3	
IHIPGGLSPESKK	2	Unmodified	1361.7667	0.76669959	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			37.81	36.335	4	0.02047	30445	160511_QHF_FH_JSI10i_3	33.227	30.08			0.859	0.96225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.859	0.96225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22247000	12425000	9822300	0	0	0	22247000	12425000	9822300	0	0	0	0	0	0	24369	1896	23095	152219	206125	206125			0	
IHISVSEPIIPFR	0	Unmodified	1506.8558	0.85584895	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	81.326	80.615	3	1.4349E-05	71907	160511_QHF_FH_JSI11i_3	107.06	98.751			0.94234	0.95706	16.497	4	0	Median	1.4491	1.1763	NaN	1	0	Median	0.94674	1.0567	NaN	1	0	Median	0.93797	0.86686	NaN	1	0	Median	0.81432	0.82936	NaN	1	0	Median	117140000	54741000	62399000	18492000	7938900	10553000	21110000	11569000	9541000	44091000	20958000	23132000	33447000	14274000	19173000	24370	3252	23096	152220;152221;152222;152223	206126;206127;206128;206129	206126			4	
IHKNDFAGLK	2	Unmodified	1141.6244	0.62439245	473	O75093	SLIT1	Slit homolog 1 protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	74.105	64.707	3	0.04686	35124	160513_QHF_FH_JSI11Kac_6	24.855	18.622			0.83025	0.83673	13.441	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80676	0.76087	NaN	1	0	Median	0.85443	0.92016	NaN	1	0	Median	52075000	30107000	21968000	0	0	0	0	0	0	29020000	15778000	13242000	23055000	14329000	8726000	24371	473	23097	152224;152225	206130;206131	206130			2	
IHKNSSTYWEGK	2	Acetyl (K)	1490.7154	0.7153923	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	36.739	27.883	3	0.0093676	15675	160513_QHF_FH_JSI10Kac_6	41.644	36.565			0.84858	0.96392	9.3037	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8583	1.0295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83897	0.90254	NaN	1	0	Median	15168000	7037800	8130700	0	0	0	9064500	3968600	5095800	0	0	0	6104000	3069200	3034900	24372	1282	23098	152226;152227;152228;152229	206132;206133;206134	206134	1199		3	
IHLAQSLHK	1	Unmodified	1045.6033	0.60326308	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	3.15			15						1	4	4	3	5	20.178	19.012	2;3	2.5854E-06	16021	160511_QHF_FH_JSI10i_3	126.24	56.431			0.69011	0.69473	96.672	13	9	Median	0.57258	0.46434	126.88	3	1	Median	0.40349	0.47093	38.099	2	2	Median	2.0853	1.9774	89.811	3	3	Plateau	0.83743	0.85444	109.53	5	3	Median	3756500000	1778900000	1977600000	1219800000	586590000	633210000	281880000	194590000	87292000	444240000	173570000	270680000	1810600000	824170000	986390000	24373	1844	23099	152230;152231;152232;152233;152234;152235;152236;152237;152238;152239;152240;152241;152242;152243;152244;152245	206135;206136;206137;206138;206139;206140;206141;206142;206143;206144;206145;206146;206147;206148;206149;206150;206151;206152;206153	206137			19	
IHLAVTEMASLFPK	1	Unmodified	1555.8432	0.84323535	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	90.802	90.769	3	2.8675E-05	78836	160511_QHF_FH_JSI12i_3	102.62	94.896			1.3588	1.3321	18.88	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5845	1.5223	NaN	1	1	Median	1.1652	1.1656	NaN	1	0	Median	60955000	26665000	34289000	0	0	0	0	0	0	7753700	1884600	5869200	53201000	24781000	28420000	24374	5545	23100	152246;152247	206154;206155;206156	206156			3	
IHLDEKSFR	1	Acetyl (K)	1185.6142	0.6142217	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	50.995	41.264	2;3	0.00036456	22385	160513_QHF_FH_JSI11Kac_6	88.496	71.825			0.064367	0.069867	145.67	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.056267	0.05444	205	2	1	Median	0.064367	0.069867	NaN	1	1	Median	84851000	78655000	6196300	0	0	0	0	0	0	76399000	70676000	5723900	8451400	7979100	472330	24375	1471	23101	152248;152249;152250	206157;206158;206159	206158	1455		3	
IHLELLPNQGMLIK	1	Unmodified	1617.9276	0.92763369	5046	Q9NVR2	INTS10	Integrator complex subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	86.02	85.944	3	0.032025	76682	160511_QHF_FH_JSI11i_3	26.124	13.959			3.5077	3.4836	17.622	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2318	3.0755	NaN	1	0	Median	3.8071	3.9459	NaN	1	0	Median	54140000	11965000	42174000	0	0	0	0	0	0	29504000	6937100	22567000	24636000	5028400	19607000	24376	5046	23102	152251;152252	206160	206160			1	
IHLFDIDVPGK	1	Unmodified	1252.6816	0.68157298	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		10	12							5	6	6	5	78.725	78.008	2;3	4.0759E-06	69398	160511_QHF_FH_JSI11i_3	104.52	88.984			0.96206	0.94447	32.523	18	8	Median	1.2496	1.0957	38.817	5	2	Median	0.74931	0.90381	30.72	4	2	Median	1.0142	0.96433	10.675	4	1	Median	0.68634	0.71353	30.944	5	3	Median	830740000	422680000	408060000	58994000	26941000	32053000	86531000	46938000	39593000	237130000	122720000	114410000	448090000	226080000	222010000	24377	4924	23103	152253;152254;152255;152256;152257;152258;152259;152260;152261;152262;152263;152264;152265;152266;152267;152268;152269;152270;152271;152272;152273;152274	206161;206162;206163;206164;206165;206166;206167;206168;206169;206170;206171;206172;206173;206174;206175;206176;206177;206178;206179;206180;206181;206182;206183;206184;206185;206186;206187;206188;206189;206190;206191;206192;206193;206194;206195;206196;206197;206198;206199;206200;206201;206202;206203;206204;206205;206206;206207	206165			47	
IHLFSMAFR	0	Unmodified	1120.5852	0.58517017	3202	Q70J99	UNC13D	Protein unc-13 homolog D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	75.561	67.419	3	2.363E-08	37064	160513_QHF_FH_JSI10Kac_6	121.09	109.38			1.1539	0.98642	21.502	3	2	Plateau	1.1539	0.98642	NaN	1	0	Median	0.86095	1.0223	NaN	1	1	Median	1.5352	1.4554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77634000	36090000	41544000	21907000	10581000	11325000	38079000	18079000	20000000	17648000	7429200	10219000	0	0	0	24378	3202	23104	152275;152276;152277;152278;152279	206208;206209;206210;206211;206212;206213	206213			6	
IHLLELEK	1	Unmodified	993.58588	0.58588168	1859	P55347;Q96KN3	PKNOX1;PKNOX2	Homeobox protein PKNOX1;Homeobox protein PKNOX2	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.417	50.299	3	0.00047767	44479	160511_QHF_FH_JSI11i_3	83.206	19.641			1.2102	1.1808	9.0016	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1724	1.1079	NaN	1	0	Median	1.2491	1.2584	NaN	1	0	Median	52813000	24042000	28770000	0	0	0	0	0	0	23439000	12277000	11162000	29374000	11765000	17608000	24379	1859	23105	152280;152281	206214;206215	206214			2	
IHLMPSMNPDGYEK	1	Unmodified	1630.7483	0.74834869	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				56.69	55.68	3	0.012179	48858	160511_QHF_FH_JSI9i_2	36.944	32.143			0.84147	0.73785	NaN	1	0	Median	0.84147	0.73785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17692000	9118500	8573200	17692000	9118500	8573200	0	0	0	0	0	0	0	0	0	24380	594	23106	152282	206216	206216			1	
IHLQLWDTAGQER	0	Unmodified	1565.795	0.79503961	1731	P51159	RAB27A	Ras-related protein Rab-27A	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		60.946	60.946	3	0.0024255	54214	160511_QHF_FH_JSI11i_3	43.761	32.974			0.77826	0.73203	18.182	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77826	0.73203	18.182	2	2	Median	NaN	NaN	NaN	0	0	Median	114160000	55669000	58494000	0	0	0	0	0	0	114160000	55669000	58494000	0	0	0	24381	1731	23107	152283;152284	206217;206218	206218			2	
IHLQQQQQQLLQEETLPR	0	Unmodified	2229.1866	0.18657858	5284	Q9UGP4	LIMD1	LIM domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			59.914	58.783	3	1.0979E-08	51679	160511_QHF_FH_JSI9i_2	120.63	104.9			1.5968	1.4484	37.043	3	3	Median	1.6516	1.4484	NaN	1	1	Median	1.127	1.3514	52.08	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74681000	28998000	45684000	17295000	6813500	10481000	57386000	22184000	35202000	0	0	0	0	0	0	24382	5284	23108	152285;152286;152287	206219;206220;206221;206222	206221			4	
IHLTENGIR	0	Unmodified	1051.5774	0.57744226	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	28.122	27.665	2	0.039601	23702	160511_QHF_FH_JSI11i_3	38.086	15.067			0.78865	0.7651	5.6667	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65298	0.7651	NaN	1	0	Median	0.89839	0.83108	NaN	1	0	Median	0.69232	0.74566	NaN	1	0	Median	185290000	102860000	82426000	0	0	0	27161000	16130000	11032000	87413000	47787000	39626000	70716000	38947000	31768000	24383	5215	23109	152288;152289;152290	206223	206223			1	
IHLTVVYFGK	1	Unmodified	1175.6703	0.67028001	3554	Q8N6G5	CSGALNACT2	Chondroitin sulfate N-acetylgalactosaminyltransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	72.968	64.209	3	0.00043974	33634	160513_QHF_FH_JSI12Kac_6	73.985	73.985			0.84854	1.1032	15.779	4	0	Linear	1.0929	0.92988	NaN	1	0	Median	0.80749	0.97852	NaN	1	0	Median	1.2932	1.2575	NaN	1	0	Median	1.1571	1.2437	NaN	1	0	Median	71986000	34373000	37613000	18226000	7520800	10706000	21310000	12518000	8792100	14659000	6085400	8573200	17791000	8248900	9542000	24384	3554	23110	152291;152292;152293;152294	206224;206225;206226;206227;206228;206229	206228			6	
IHLVDKWNGLSK	2	Acetyl (K)	1450.7932	0.79324869	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.435	64.053	3	0.0038303	34766	160513_QHF_FH_JSI11Kac_6	59.796	48.849			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16823000	16823000	0	0	0	0	0	0	0	16823000	16823000	0	0	0	0	24385	3749	23111	152295	206230	206230	2927		1	
IHLVNLTGLK	1	Unmodified	1106.6812	0.68117905	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	60.164	59.105	2;3	1.8419E-05	49629	160511_QHF_FH_JSI10i_3	101.65	94.758			0.73412	0.66933	28.749	6	4	Median	0.93111	0.76313	30.128	2	1	Median	0.42149	0.48374	6.5512	2	2	Median	0.93725	0.86631	NaN	1	0	Median	0.71123	0.72645	NaN	1	1	Median	788710000	495740000	292960000	187590000	101020000	86571000	236480000	174660000	61821000	112840000	69447000	43394000	251800000	150620000	101180000	24386	128	23112	152296;152297;152298;152299;152300;152301	206231;206232;206233;206234;206235;206236;206237	206233			6	
IHLVVLVK	1	Unmodified	919.62187	0.62187326	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	63.49	54.177	2	0.043731	29673	160513_QHF_FH_JSI10Kac_6	45.718	32.73			1.1281	1.2482	13.9	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87818	1.0617	NaN	1	0	Median	1.4596	1.4002	NaN	1	0	Median	1.1281	1.2482	NaN	1	0	Median	48443000	24036000	24407000	0	0	0	21652000	11996000	9655300	17047000	6746200	10301000	9744900	5293900	4451000	24387	2080	23113	152302;152303;152304	206238	206238			1	
IHMGSCAENTAK	1	Unmodified	1317.5806	0.58055508	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	1	2	4	3	12.289	11.12	2;3	2.53E-17	8930	160511_QHF_FH_JSI11i_3	134.75	127.03			0.80031	0.83233	46.709	10	1	Median	1.5436	1.3058	NaN	1	0	Median	0.98765	1.1988	67.067	2	1	Median	0.64629	0.63998	17.553	4	0	Median	1.2759	1.2915	33.238	3	0	Median	2070800000	813800000	1257000000	70502000	25208000	45294000	190860000	88102000	102760000	827380000	347240000	480140000	982060000	353260000	628800000	24388	1249	23114	152305;152306;152307;152308;152309;152310;152311;152312;152313;152314	206239;206240;206241;206242;206243;206244;206245;206246;206247;206248;206249	206240			11	
IHMGSCAENTAK	1	Oxidation (M)	1333.5755	0.5754697	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									2	3	10.105	10.16	2;3	2.9256E-05	8597	160511_QHF_FH_JSI12i_3	88.83	81.286			1.1447	1.0891	32.194	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.124	1.0404	6.4735	2	0	Median	1.3189	1.3599	38.69	3	0	Median	428780000	196810000	231970000	0	0	0	0	0	0	176920000	82440000	94476000	251860000	114370000	137500000	24389	1249	23114	152315;152316;152317;152318;152319	206250;206251;206252;206253;206254;206255	206255		882	6	
IHMSGPK	1	Unmodified	768.39524	0.39524414	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	9.3293	9.0458	2	0.035999	6775	160511_QHF_FH_JSI9i_3	49.358	32.432			1.0022	0.89869	11.057	4	0	Median	1.021	0.85045	NaN	1	0	Median	0.68775	0.79824	NaN	1	0	Median	1.0078	0.94967	NaN	1	0	Median	0.99677	1.0221	NaN	1	0	Median	656470000	354570000	301900000	73093000	38179000	34914000	118750000	77733000	41019000	197310000	127880000	69424000	267320000	110770000	156550000	24390	2286	23115	152320;152321;152322;152323	206256;206257	206257			2	
IHMVYSK	1	Unmodified	876.45276	0.45275902	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	18.03	18.056	3	0.026103	14630	160511_QHF_FH_JSI12i_3	31.289	22.517			0.5699	0.57423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5699	0.57423	NaN	1	0	Median	86457000	56250000	30207000	0	0	0	0	0	0	0	0	0	86457000	56250000	30207000	24391	910	23116	152324	206258	206258			1	
IHNADVTLR	0	Unmodified	1037.5618	0.56179219	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2.33	0.471		2	1							1	1		1	17.268	16.762	3	0.041615	13298	160511_QHF_FH_JSI12i_3	42.395	22.633			1.2066	1.0173	23.339	3	0	Median	1.2066	1.0173	NaN	1	0	Median	0.66534	0.83033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3098	1.3226	NaN	1	0	Median	347070000	156990000	190080000	93630000	36341000	57289000	103620000	60421000	43198000	0	0	0	149820000	60225000	89597000	24392	5505	23117	152325;152326;152327	206259	206259			0	
IHNAENIQPGEQK	1	Unmodified	1476.7321	0.732105	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.7		8	4				1	4		3	3	5	6	14.807	11.908	2;3	2.289E-07	10195	160511_QHF_FH_JSI10i_2	101.39	94.952			0.99279	1.0701	15.412	17	1	Median	1.3389	1.1385	5.2551	3	0	Plateau	0.94362	1.1656	8.6143	3	0	Plateau	1.1111	1.076	5.6742	5	0	Median	0.83098	0.84382	22.42	6	1	Median	2874200000	1509000000	1365200000	421840000	220170000	201670000	511160000	282650000	228510000	962200000	484510000	477700000	978970000	521680000	457290000	24393	2217	23118	152328;152329;152330;152331;152332;152333;152334;152335;152336;152337;152338;152339;152340;152341;152342;152343;152344	206260;206261;206262;206263;206264;206265;206266;206267;206268;206269;206270;206271;206272;206273;206274;206275;206276;206277;206278;206279;206280;206281;206282;206283;206284;206285;206286;206287;206288;206289	206283			30	
IHNAENIQPGEQKYEYK	2	Acetyl (K)	2102.0069	0.006882877	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	46.139	35.89	3	0.0094914	20159	160513_QHF_FH_JSI11Kac_5	42.913	34.204			0.50347	0.51706	55.261	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35526	0.34982	NaN	1	0	Median	0.71352	0.76426	NaN	1	0	Median	16229000	12055000	4174600	0	0	0	0	0	0	14375000	10879000	3496000	1854500	1175900	678580	24394	2217	23119	152345;152346	206290;206291	206290	2332		2	
IHNFGLIQEK	1	Unmodified	1197.6506	0.6506072	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.57		2	8						3	3	4	4	2	42.38	39.653	2;3	2.1898E-06	33246	160511_QHF_FH_JSI10i_3	91.549	80.385			1.055	1.1903	23.7	13	1	Median	1.55	1.2441	26.247	3	0	Median	0.97139	1.1326	14.167	4	0	Median	1.9827	1.9373	32.711	4	1	Linear	1.0435	1.0367	0.71364	2	0	Median	3162800000	1549200000	1613600000	286750000	105220000	181540000	729800000	414800000	315000000	842320000	354060000	488270000	1303900000	675140000	628750000	24395	1675	23120	152347;152348;152349;152350;152351;152352;152353;152354;152355;152356;152357;152358;152359	206292;206293;206294;206295;206296;206297;206298;206299;206300;206301;206302;206303;206304;206305;206306;206307;206308;206309;206310;206311;206312;206313;206314;206315;206316;206317;206318;206319;206320	206298			29	
IHNFTSK	1	Unmodified	845.43955	0.43955179	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			4									2	2	8.3167	8.3655	2;3	0.011491	5776	160511_QHF_FH_JSI12i_3	40.268	31.355			0.87497	0.86108	14.53	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0555	0.99303	10.908	2	0	Median	0.79021	0.79258	2.4688	2	0	Median	557140000	294480000	262660000	0	0	0	0	0	0	228050000	106930000	121110000	329100000	187550000	141550000	24396	4679	23121	152360;152361;152362;152363	206321;206322	206322			2	
IHNGSVFTK	1	Unmodified	1001.5294	0.52942943	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.423	13.46	3	0.00021927	10417	160511_QHF_FH_JSI12i_3	71.451	41.978			0.93745	0.90626	6.5565	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0265	0.94926	NaN	1	0	Median	0.85613	0.8652	NaN	1	0	Median	258860000	126360000	132500000	0	0	0	0	0	0	87615000	41121000	46494000	171240000	85240000	86004000	24397	1588	23122	152364;152365	206323;206324	206324			1	
IHNHLPEIQK	1	Unmodified	1227.6724	0.67240528	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	21.728	21.719	2;3	9.7196E-05	17748	160511_QHF_FH_JSI12i_3	65.5	54.89			1.3478	1.3965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3478	1.3965	NaN	1	0	Median	114020000	59089000	54930000	0	0	0	0	0	0	0	0	0	114020000	59089000	54930000	24398	2625	23123	152366;152367	206325;206326	206325			2	
IHNIDIPTTQQVPHIEALLK	1	Unmodified	2279.2638	0.26376627	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2.33	0.471		2	1							1	1		1	82.852	82.366	4	0.0094945	71080	160511_QHF_FH_JSI12i_3	35.091	30.984			1.0182	0.88274	46.702	3	1	Median	1.0182	0.88274	NaN	1	0	Median	0.62183	0.77005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8151	1.8353	NaN	1	1	Median	111600000	40076000	71524000	14508000	7710700	6797600	21624000	14626000	6998300	0	0	0	75468000	17740000	57728000	24399	28	23124	152368;152369;152370	206327;206328	206328			2	
IHNLTAYLQTLHR	0	Unmodified	1578.8631	0.86305959	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	67.837	58.703	4	0.00064614	31977	160513_QHF_FH_JSI11Kac_6	49.929	45.128			1.8754	2.2454	36.103	3	1	Median	NaN	NaN	NaN	0	0	Median	1.8754	2.2454	NaN	1	0	Median	1.2442	1.2045	NaN	1	0	Median	2.105	2.2566	NaN	1	1	Median	35224000	13601000	21623000	0	0	0	19798000	7624300	12173000	8796800	4104900	4691900	6629500	1872100	4757400	24400	4668	23125	152371;152372;152373	206329;206330;206331;206332	206329			3	
IHNNMFDPALIGDKPK	2	Unmodified	1808.9243	0.92433922	3810	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	54.293	54.056	4	0.014885	46399	160511_QHF_FH_JSI12i_3	41.422	29.399			0.86886	0.88145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86886	0.88145	NaN	1	1	Median	101770000	59215000	42550000	0	0	0	0	0	0	0	0	0	101770000	59215000	42550000	24401	3810	23126	152374	206333	206333			1	
IHNQNNEQAWK	1	Unmodified	1380.6535	0.65346075	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	10.43	10.468	2;3	1.1989E-07	7750	160511_QHF_FH_JSI12i_3	115.18	94.318			1.1047	1.0255	27.35	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1047	1.0255	35.805	3	1	Median	1.0301	1.0798	20.232	2	0	Median	426680000	214490000	212190000	0	0	0	0	0	0	200060000	92228000	107830000	226620000	122260000	104350000	24402	1810	23127	152375;152376;152377;152378;152379	206334;206335;206336;206337;206338	206337			5	
IHNVGSPLK	1	Unmodified	963.55016	0.55016488	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	15.954	16.005	2;3	0.0010924	12707	160511_QHF_FH_JSI12i_3	65.305	50.154			0.74258	0.76911	4.0698	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74258	0.76911	4.0698	2	2	Median	706780000	381260000	325520000	0	0	0	0	0	0	0	0	0	706780000	381260000	325520000	24403	1778	23128	152380;152381	206339;206340	206340			2	
IHPFHILIALETYK	1	Unmodified	1693.9556	0.955563	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	5	2	1	84.085	76.456	2;3;4	2.4005E-24	40568	160513_QHF_FH_JSI12Kac_6	126.63	114.25			0.9572	0.96153	55.081	10	4	Median	0.83538	0.72291	10.34	3	0	Median	0.64502	0.76065	46.692	4	2	Median	2.0261	1.9209	24.553	2	2	Median	2.0386	2.2064	NaN	1	0	Median	1665100000	894200000	770930000	549170000	299530000	249640000	778570000	501570000	277010000	275090000	74431000	200660000	62300000	18672000	43628000	24404	962	23129	152382;152383;152384;152385;152386;152387;152388;152389;152390;152391;152392	206341;206342;206343;206344;206345;206346;206347;206348;206349;206350;206351;206352;206353;206354	206348			13	
IHPLVPQVPGPVTAAMATGLAVNGK	1	Unmodified	2437.3515	0.35153542	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		97.23	96.975	3	0.00074215	85913	160511_QHF_FH_JSI11i_3	40.682	33.57			0.94825	0.88861	8.2353	3	1	Median	1.1681	1.0156	NaN	1	0	Median	0.73088	0.88861	NaN	1	1	Median	0.94825	0.87386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32784000	15713000	17071000	5257900	1997300	3260600	7117900	4384600	2733300	20408000	9331100	11077000	0	0	0	24405	5488	23130	152393;152394;152395	206355;206356;206357;206358;206359	206356			5	
IHPMAYQLQLQAASNFK	1	Oxidation (M)	1974.9986	0.9985668	2068	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	62.306	61.709	3	4.424E-05	53188	160511_QHF_FH_JSI12i_3	74.786	63.97			1.1779	1.1009	13.918	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.95917	1.1009	NaN	1	1	Median	0.96017	0.89846	NaN	1	1	Median	1.1792	1.1727	NaN	1	0	Median	248200000	115400000	132800000	0	0	0	49901000	20739000	29161000	43408000	25382000	18026000	154890000	69282000	85608000	24406	2068	23131	152396;152397;152398	206360;206361;206362;206363	206363		1728	4	
IHPMAYQLQLQAASNFK	1	Unmodified	1959.0037	0.003652175	2068	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	69.953	69.244	2;3	4.2008E-08	57007	160511_QHF_FH_JSI9i_3	122.93	111.82			1.2883	1.3328	49.046	5	4	Median	1.7503	1.403	NaN	1	1	Median	3.1014	3.7501	NaN	1	1	Median	1.1687	1.1049	NaN	1	1	Median	1.2803	1.3065	2.8141	2	1	Median	1007000000	408540000	598430000	151510000	45327000	106190000	7465900	1250200	6215700	264520000	117130000	147390000	583480000	244830000	338650000	24407	2068	23131	152399;152400;152401;152402;152403	206364;206365;206366;206367;206368;206369;206370;206371	206367			8	
IHPQTIIAGWR	0	Unmodified	1290.7197	0.71968982	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.12		1	2						7	3	4	2	1	62.475	55.718	2;3	2.4829E-08	30355	160513_QHF_FH_JSI10Kac_6	94.363	79.917			1.0636	1.1189	20.787	10	1	Median	1.4769	1.2435	37.75	3	0	Median	0.85096	1.0019	12.18	4	1	Median	1.2304	1.1615	6.371	2	0	Median	1.1865	1.2449	NaN	1	0	Median	1246500000	589520000	657000000	269890000	118570000	151320000	693970000	352320000	341650000	231420000	91560000	139870000	51240000	27077000	24163000	24408	2090	23132	152404;152405;152406;152407;152408;152409;152410;152411;152412;152413	206372;206373;206374;206375;206376;206377;206378;206379;206380;206381;206382;206383;206384	206381			12	
IHPTSVISGYR	0	Unmodified	1228.6564	0.65642086	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		6	8						8	6	6	6	4	38.529	34.677	2;3	1.5161E-18	28939	160511_QHF_FH_JSI10i_3	130.98	113.96			0.98953	0.98216	15.709	22	0	Median	1.1239	0.94546	6.7175	6	0	Median	0.91261	1.0446	9.6097	6	0	Median	1.0232	0.99953	24.797	6	0	Median	0.81038	0.86929	11.091	4	0	Median	6320900000	3026600000	3294300000	2386900000	983940000	1403000000	1887400000	993960000	893480000	1177000000	588470000	588520000	869500000	460220000	409270000	24409	1132	23133	152414;152415;152416;152417;152418;152419;152420;152421;152422;152423;152424;152425;152426;152427;152428;152429;152430;152431;152432;152433;152434;152435	206385;206386;206387;206388;206389;206390;206391;206392;206393;206394;206395;206396;206397;206398;206399;206400;206401;206402;206403;206404;206405;206406;206407;206408;206409;206410;206411;206412;206413;206414;206415	206390			31	
IHPVASK	1	Unmodified	750.43882	0.43882351	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	6.2153	5.9097	2	0.020108	4004	160511_QHF_FH_JSI10i_2	57.281	24.81			1.0186	0.99489	15.578	5	0	Median	1.1345	0.95933	NaN	1	0	Median	0.74722	0.91811	NaN	1	0	Median	0.99569	0.99489	NaN	1	0	Median	1.1582	1.2198	15.203	2	0	Median	651100000	301100000	350000000	61142000	28176000	32967000	66250000	37930000	28320000	56669000	23063000	33605000	467040000	211930000	255110000	24410	989	23134	152436;152437;152438;152439;152440	206416;206417	206416			2	
IHPVSTMVK	1	Oxidation (M)	1026.5532	0.55320134	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.63	3.57		19	28					1	3	11	12	12	16	19.876	18.674	2;3	0.0013174	18222	160511_QHF_FH_JSI10i_2	72.485	53.754			1.041	0.97312	112.29	49	8	Median	1.2856	1.0952	97.322	11	2	Median	1.0149	1.1706	127.6	12	2	Median	0.93958	0.92609	119.69	10	2	Median	0.83864	0.90313	105.14	16	2	Median	24896000000	11422000000	13474000000	1713500000	582320000	1131200000	4587900000	2067100000	2520800000	6561200000	3212000000	3349200000	12033000000	5561000000	6472300000	24411	864	23135	152441;152442;152443;152444;152445;152446;152447;152448;152449;152450;152451;152452;152453;152454;152455;152456;152457;152458;152459;152460;152461;152462;152463;152464;152465;152466;152467;152468;152469;152470;152471;152472;152473;152474;152475;152476;152477;152478;152479;152480;152481;152482;152483;152484;152485;152486;152487;152488;152489;152490;152491	206418;206419;206420;206421;206422;206423;206424;206425;206426;206427;206428;206429;206430;206431;206432;206433;206434;206435;206436;206437;206438;206439;206440;206441;206442;206443;206444;206445;206446;206447;206448;206449;206450;206451;206452;206453;206454;206455;206456;206457;206458;206459;206460;206461;206462;206463;206464;206465;206466;206467	206455		404	49	
IHPVSTMVK	1	Unmodified	1010.5583	0.55828672	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	4.89		17	30					1	8	11	14	12	19	23.331	21.337	2;3	1.0739E-05	17828	160511_QHF_FH_JSI11i_3	86.136	70.985			1.0846	1.0568	139.14	53	12	Median	1.157	0.99366	105.72	10	2	Median	0.92237	1.0461	142.53	13	5	Median	1.122	1.0698	126.62	11	3	Median	1.0846	1.163	166.44	19	2	Median	118010000000	52147000000	65860000000	14502000000	6426700000	8075600000	22692000000	10641000000	12051000000	25738000000	10261000000	15477000000	55074000000	24818000000	30256000000	24412	864	23135	152492;152493;152494;152495;152496;152497;152498;152499;152500;152501;152502;152503;152504;152505;152506;152507;152508;152509;152510;152511;152512;152513;152514;152515;152516;152517;152518;152519;152520;152521;152522;152523;152524;152525;152526;152527;152528;152529;152530;152531;152532;152533;152534;152535;152536;152537;152538;152539;152540;152541;152542;152543;152544;152545;152546;152547	206468;206469;206470;206471;206472;206473;206474;206475;206476;206477;206478;206479;206480;206481;206482;206483;206484;206485;206486;206487;206488;206489;206490;206491;206492;206493;206494;206495;206496;206497;206498;206499;206500;206501;206502;206503;206504;206505;206506;206507;206508;206509;206510;206511;206512;206513;206514;206515;206516;206517;206518;206519;206520;206521;206522;206523;206524;206525;206526;206527;206528;206529;206530;206531;206532;206533;206534;206535;206536;206537;206538;206539;206540;206541;206542;206543;206544;206545;206546;206547	206469			80	
IHQEGDALPGHSK	1	Unmodified	1387.6844	0.68442653	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	9.9273	9.9904	3;4	5.9473E-05	7283	160511_QHF_FH_JSI12i_3	62.378	52.845			0.94628	0.96974	10.718	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92645	0.86934	NaN	1	0	Median	0.98521	1.022	7.4282	2	0	Median	203650000	101690000	101950000	0	0	0	0	0	0	45554000	19315000	26239000	158090000	82377000	75716000	24413	2784	23136	152548;152549;152550	206548;206549;206550	206548			3	
IHQETFGK	1	Unmodified	958.48723	0.48723027	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.15		7	2						1	2	1	4	3	11.517	10.258	2;3	0.0019018	6026	160513_QHF_FH_JSI11Kac_6	59.35	36.03			0.94998	0.96847	15.032	10	0	Median	0.91815	0.7679	18.751	2	0	Median	0.8329	1.032	NaN	1	0	Median	0.9974	0.9468	12.98	4	0	Median	0.97639	0.96442	7.3365	3	0	Plateau	1662900000	771380000	891570000	300510000	126970000	173540000	101940000	51901000	50035000	643260000	256940000	386320000	617240000	335570000	281670000	24414	2665	23137	152551;152552;152553;152554;152555;152556;152557;152558;152559;152560	206551;206552;206553;206554;206555;206556;206557;206558;206559	206554			9	
IHQFLSEQFLESEQK	1	Unmodified	1861.921	0.92102798	3719	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.98	3		2							1	1	1	2	69.173	68.781	3	7.3003E-05	54417	160511_QHF_FH_JSI12i_3	97.417	81.533			0.76273	0.77837	36.026	5	2	Median	1.6313	1.3568	NaN	1	0	Median	0.87036	1.0194	NaN	1	0	Median	0.58537	0.55411	NaN	1	1	Median	0.68483	0.70539	13.924	2	1	Median	402900000	199940000	202960000	95176000	25906000	69270000	92776000	45098000	47678000	80135000	56781000	23354000	134810000	72153000	62658000	24415	3719	23138	152561;152562;152563;152564;152565	206560;206561;206562	206562			3	
IHQIEYAMEAVK	1	Unmodified	1430.7228	0.72278587	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.54		10	2						3	5	4	3	3	50.883	48.155	2;3	1.1596E-05	41531	160511_QHF_FH_JSI12i_2	126.19	111.99			0.96583	1.0218	94.307	15	14	Median	1.2632	1.0218	73.868	5	4	Median	0.73067	0.87385	106.37	4	4	Median	1.8416	1.79	124.28	3	3	Median	0.42216	0.47528	134.49	3	3	Median	3292700000	1857500000	1435200000	904560000	516220000	388340000	877950000	501900000	376050000	599960000	326900000	273060000	910250000	512490000	397760000	24416	1264	23139	152566;152567;152568;152569;152570;152571;152572;152573;152574;152575;152576;152577;152578;152579;152580	206563;206564;206565;206566;206567;206568;206569;206570;206571;206572;206573;206574;206575;206576;206577;206578;206579;206580;206581;206582	206563			20	
IHQSTNQTPALNLLWEK	1	Unmodified	1992.0429	0.042874453	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		70.055	70.055	3	0.00010935	62476	160511_QHF_FH_JSI11i_3	64.298	58.98			1.0896	1.0083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0896	1.0083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72594000	32173000	40421000	0	0	0	0	0	0	72594000	32173000	40421000	0	0	0	24417	2993	23140	152581	206583;206584	206584			2	
IHQTGLK	1	Unmodified	795.46029	0.46028724	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	6.1389	6.1866	2	0.02937	3987	160511_QHF_FH_JSI11i_3	52.636	9.7221			1.1118	1.0869	20.04	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3276	1.2523	NaN	1	0	Median	0.93109	0.94328	NaN	1	0	Median	289800000	139960000	149830000	0	0	0	0	0	0	123720000	56195000	67524000	166080000	83767000	82311000	24418	3904	23141	152582;152583	206585	206585			1	
IHSITGLPPAMQK	1	Unmodified	1391.7595	0.75950572	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	2	4	46.889	46.377	2;3	0.0011633	39753	160511_QHF_FH_JSI12i_3	61.932	57.416			1.1544	1.2143	56.614	8	5	Median	NaN	NaN	NaN	0	0	Median	2.352	2.7019	103.73	2	2	Median	1.2968	1.2151	30.623	2	1	Median	1.1544	1.1344	23.357	4	2	Median	823610000	267090000	556520000	0	0	0	280670000	33833000	246840000	119810000	42221000	77592000	423130000	191040000	232090000	24419	175	23142	152584;152585;152586;152587;152588;152589;152590;152591	206586;206587;206588;206589;206590;206591;206592;206593	206591			5	
IHSLTHLDSVTK	1	Unmodified	1349.7303	0.73031409	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	29.119	28.425	3	0.00037596	23123	160511_QHF_FH_JSI12i_3	73.927	60.118			1.1164	1.1819	24.712	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2449	1.4076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0012	0.9924	NaN	1	1	Median	181380000	83675000	97707000	0	0	0	28841000	10809000	18032000	0	0	0	152540000	72866000	79675000	24420	1588	23143	152592;152593	206594;206595	206595			2	
IHSMTIEAPITK	1	Unmodified	1339.717	0.71697221	668	O95263;O60658	PDE8B;PDE8A	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B;High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A	yes	no	0	0	0	0				By MS/MS	2	0		1											1	45.464	44.073	3	0.0024163	37666	160511_QHF_FH_JSI12i_2	47.915	39.505			0.97462	1.0952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97462	1.0952	NaN	1	0	Median	34422000	18704000	15718000	0	0	0	0	0	0	0	0	0	34422000	18704000	15718000	24421	668	23144	152594	206596	206596			1	
IHSQEEALR	0	Unmodified	1081.5516	0.55162144	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							2	2	4	1	9.7347	9.3786	2;3	1.8213E-05	7315	160511_QHF_FH_JSI10i_2	81.95	69.374			1.0222	1.034	9.1718	9	0	Median	1.2119	1.0268	0.98311	2	0	Median	0.80395	0.98904	6.6742	2	0	Median	1.05	1.0667	11.537	4	0	Median	0.83727	0.94137	NaN	1	0	Median	2199500000	1126800000	1072700000	519190000	227970000	291220000	634800000	365440000	269360000	896070000	457380000	438680000	149460000	76033000	73428000	24422	165	23145	152595;152596;152597;152598;152599;152600;152601;152602;152603	206597;206598;206599;206600;206601;206602;206603;206604;206605;206606	206604			10	
IHTDFEK	1	Unmodified	888.43413	0.43413207	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	15.576	15.294	2;3	0.0030359	12209	160511_QHF_FH_JSI11i_2	72.875	36.995			1.0429	1.0563	38.901	3	1	Median	NaN	NaN	NaN	0	0	Median	0.59342	0.73826	NaN	1	1	Median	1.0429	1.0563	NaN	1	0	Median	1.3701	1.606	NaN	1	0	Median	506520000	266140000	240380000	0	0	0	168700000	102460000	66240000	265190000	129980000	135210000	72626000	33701000	38926000	24423	4992	23146	152604;152605;152606	206607;206608	206607			2	
IHTEPQLSAALEYVR	0	Unmodified	1725.905	0.90498399	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	67.671	67.139	3	3.2771E-05	57982	160511_QHF_FH_JSI12i_3	78.902	71.998			1.2618	1.2107	9.403	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3219	1.2274	NaN	1	0	Median	1.036	1.0917	9.242	2	0	Median	356010000	171780000	184240000	0	0	0	0	0	0	156770000	73940000	82826000	199250000	97837000	101410000	24424	1609	23147	152607;152608;152609	206609;206610;206611;206612;206613	206613			4	
IHTFNKTLTQEEK	2	Acetyl (K)	1629.8362	0.83623572	3269	Q7Z4G4	TRMT11	tRNA (guanine(10)-N2)-methyltransferase homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.994	37.32	3	0.022207	20393	160513_QHF_FH_JSI11Kac_6	44.457	33.512			0.035884	0.035932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.035884	0.035932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2918400	2809100	109240	0	0	0	0	0	0	2918400	2809100	109240	0	0	0	24425	3269	23148	152610	206614	206614	2817		1	
IHTLELK	1	Unmodified	852.5069	0.50690308	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	25.964	25.08	3	0.0044891	20934	160511_QHF_FH_JSI11i_3	58.981	9.6227			1.1853	1.1802	66.271	6	1	Median	1.0692	0.89856	NaN	1	0	Median	0.86347	1.073	NaN	1	0	Median	1.6747	1.6585	41.833	2	0	Median	2.2426	2.431	108.47	2	1	Median	311020000	139850000	171170000	60538000	25145000	35394000	60344000	34016000	26328000	123820000	52587000	71233000	66319000	28104000	38215000	24426	3499	23149	152611;152612;152613;152614;152615;152616;152617	206615;206616;206617;206618;206619;206620;206621;206622;206623;206624	206615			10	
IHTPMEYK	1	Unmodified	1017.4954	0.49535211	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1		2	2	2	25.988	23.866	2;3	0.011047	19899	160511_QHF_FH_JSI11i_2	31.268	25.402			0.95301	1.0132	34.048	6	2	Median	NaN	NaN	NaN	0	0	Median	0.75273	0.92336	31.398	2	1	Median	0.96353	0.97277	3.0579	2	0	Median	1.3845	1.4535	48.325	2	1	Median	248820000	106030000	142790000	0	0	0	114990000	56019000	58967000	61026000	28986000	32041000	72810000	21030000	51780000	24427	386	23150	152618;152619;152620;152621;152622;152623	206625;206626;206627;206628;206629;206630	206627			6	
IHTTEFEWPK	1	Unmodified	1286.6295	0.62953741	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2.25	0.433		3	1								1	1	2	50.471	49.695	3	0.054341	43815	160511_QHF_FH_JSI10i_2	36.585	21.046			0.99901	1.1459	27.424	4	0	Median	NaN	NaN	NaN	0	0	Median	0.91117	1.1078	NaN	1	0	Median	1.7742	1.7693	NaN	1	0	Median	0.99901	1.0462	17.648	2	0	Median	135290000	64393000	70898000	0	0	0	36600000	18633000	17967000	31637000	11322000	20315000	67054000	34438000	32616000	24428	426	23151	152624;152625;152626;152627	206631	206631			0	
IHVCLYFIAPTGHSLK	1	Unmodified	1854.9815	0.98146017	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	78.167	68.724	4	0.016547	36260	160513_QHF_FH_JSI12Kac_6	40.983	31.195			2.3037	2.4904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3037	2.4904	NaN	1	1	Median	21443000	6047200	15396000	0	0	0	0	0	0	0	0	0	21443000	6047200	15396000	24429	2498	23152	152628	206632	206632			1	
IHVCLYFISPTGHSLK	1	Unmodified	1870.9764	0.97637479	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	1	2	76.958	68.892	2;3;4	2.5153E-18	38025	160513_QHF_FH_JSI10Kac_6	184.03	170.83			0.86998	0.7596	42.205	8	0	Median	0.86998	0.73661	5.0747	2	0	Median	0.62003	0.74194	6.4162	3	0	Plateau	1.8009	1.7564	NaN	1	0	Median	1.4319	1.5385	2.0033	2	0	Median	1715200000	988800000	726380000	696730000	380670000	316060000	926380000	572600000	353770000	44980000	17047000	27934000	47090000	18481000	28609000	24430	5192	23153	152629;152630;152631;152632;152633;152634;152635;152636	206633;206634;206635;206636;206637;206638;206639;206640;206641	206641			9	
IHVCLYFITPTGHSLK	1	Unmodified	1884.992	0.99202486	3853	Q92599	SEPT8	Septin-8	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	78.352	68.91	3	0.017597	36357	160513_QHF_FH_JSI12Kac_6	40.983	30.607			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13590000	0	13590000	0	0	0	0	0	0	0	0	0	13590000	0	13590000	24431	3853	23154	152637	206642	206642			1	
IHVFMNEK	1	Unmodified	1016.5113	0.51133653	4797	Q9H967	WDR76	WD repeat-containing protein 76	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	28.46	28.437	3	0.0039008	23821	160511_QHF_FH_JSI12i_3	49.442	30.199			0.95587	0.95847	6.0889	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99303	0.91808	NaN	1	0	Median	0.9201	1.0006	NaN	1	0	Median	106210000	54852000	51358000	0	0	0	0	0	0	35333000	16031000	19302000	70877000	38821000	32056000	24432	4797	23155	152638;152639	206643	206643			1	
IHVFYIDYGNR	0	Unmodified	1395.6935	0.69353465	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.55		2	9						14	6	6	7	6	66.668	61.303	2;3	1.4196E-18	33344	160513_QHF_FH_JSI10Kac_6	142	127.12			0.95323	1.0001	23.076	25	13	Median	1.5047	1.2772	27.475	6	3	Median	0.88998	1.0263	15.063	6	4	Median	0.99197	0.94955	12.393	7	4	Median	0.8528	0.88826	13.571	6	2	Median	30343000000	14839000000	15504000000	3248100000	1287800000	1960400000	12014000000	5853100000	6161000000	9029400000	4437200000	4592200000	6051700000	3260900000	2790800000	24433	3213	23156	152640;152641;152642;152643;152644;152645;152646;152647;152648;152649;152650;152651;152652;152653;152654;152655;152656;152657;152658;152659;152660;152661;152662;152663;152664	206644;206645;206646;206647;206648;206649;206650;206651;206652;206653;206654;206655;206656;206657;206658;206659;206660;206661;206662;206663;206664;206665;206666;206667;206668;206669;206670;206671;206672;206673;206674;206675;206676;206677;206678;206679;206680;206681;206682;206683;206684;206685	206685			42	
IHVFYIDYGNREVLPSTR	0	Unmodified	2178.1222	0.12218741	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	75.057	66.805	2;3;4	8.4311E-17	36887	160513_QHF_FH_JSI10Kac_6	133.86	124.44			1.2826	1.4345	7.5103	9	0	Median	1.8675	1.5977	3.5604	2	0	Median	1.2367	1.4673	3.1449	3	0	Plateau	1.5118	1.4191	1.5287	2	0	Median	1.2433	1.3151	3.3719	2	0	Median	4896500000	2008700000	2887800000	944180000	338850000	605330000	3162700000	1357300000	1805400000	395320000	169730000	225590000	394240000	142820000	251420000	24434	3213	23157	152665;152666;152667;152668;152669;152670;152671;152672;152673	206686;206687;206688;206689;206690;206691;206692;206693;206694;206695;206696;206697;206698;206699;206700	206697			15	
IHVIDHSGAR	0	Unmodified	1103.5836	0.58359027	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0		By matching	By MS/MS		3	0			2								1	1		10.643	10.326	3	0.0029013	7828	160511_QHF_FH_JSI11i_3	37.968	32.187			0.81455	0.84635	8.5481	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6947	0.79671	NaN	1	0	Median	0.95508	0.89908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182600000	100410000	82189000	0	0	0	72842000	41468000	31375000	109760000	58945000	50814000	0	0	0	24435	4266	23158	152674;152675	206701;206702	206701			2	
IHVILAQK	1	Unmodified	920.58074	0.58073672	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	2	3	32.887	29.077	2;3	0.00064836	23792	160511_QHF_FH_JSI12i_3	68.915	59.521			0.98516	0.92691	37.845	11	0	Median	1.1483	0.9501	14.41	3	0	Median	0.34147	0.38959	48.786	3	0	Plateau	1.0858	1.0361	15.755	2	0	Median	0.99382	1.027	9.4604	3	0	Median	1377700000	717480000	660220000	303350000	140420000	162930000	244800000	153690000	91106000	144060000	67221000	76839000	685490000	356150000	329340000	24436	4416	23159	152676;152677;152678;152679;152680;152681;152682;152683;152684;152685;152686	206703;206704;206705;206706;206707;206708;206709;206710;206711	206710			9	
IHVLEAQDLIAK	1	Unmodified	1348.7715	0.77145062	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	3	5	61.939	61.253	2;3	5.9784E-06	53838	160511_QHF_FH_JSI9i_2	109.24	100.51			1.1394	1.2172	11.722	10	2	Median	1.2162	1.0191	NaN	1	0	Median	0.92073	1.1331	8.4134	2	0	Median	1.1424	1.1571	7.7816	3	0	Median	1.2235	1.3034	9.3069	4	2	Median	893590000	406900000	486690000	69632000	28829000	40803000	194700000	104050000	90648000	328170000	147530000	180640000	301090000	126490000	174600000	24437	4399	23160	152687;152688;152689;152690;152691;152692;152693;152694;152695;152696;152697	206712;206713;206714;206715;206716;206717;206718;206719;206720;206721;206722;206723;206724	206715			12	
IHVLPIDDTVEGITGNLFEVYLK	1	Unmodified	2584.3789	0.3788556	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3	1	1	1	1	98.735	92.641	3	7.1758E-49	48253	160513_QHF_FH_JSI12Kac_6	186.56	167.51			1.0294	0.94655	13.193	4	0	Median	1.0437	0.87437	NaN	1	0	Median	0.68679	0.82541	NaN	1	0	Median	1.0218	1.0247	NaN	1	0	Median	1.0369	1.0937	NaN	1	0	Median	839190000	427930000	411260000	201420000	98177000	103240000	301740000	179330000	122410000	80172000	34068000	46104000	255860000	116360000	139500000	24438	1846	23161	152698;152699;152700;152701	206725;206726;206727;206728;206729;206730;206731	206729			6	
IHVSDQELQSANASVDDSR	0	Unmodified	2069.9614	0.96138925	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	40.138	40.04	3	3.4521E-06	35126	160511_QHF_FH_JSI11i_3	88.264	77.207			0.56418	0.54219	19.784	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50972	0.4714	NaN	1	0	Median	0.62446	0.62359	NaN	1	0	Median	90291000	53890000	36401000	0	0	0	0	0	0	44230000	28436000	15794000	46060000	25454000	20606000	24439	1208	23162	152702;152703	206732;206733;206734	206732			3	
IHVSDQELQSANASVDDSRLEELK	1	Unmodified	2682.3097	0.30966642	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							1	1	4	6	60.766	60.175	3;4	1.5797E-28	53293	160511_QHF_FH_JSI11i_3	152.13	144.51			0.93055	0.94474	13.57	12	6	Median	1.1479	0.97464	NaN	1	0	Median	0.66066	0.80907	NaN	1	0	Median	1.0443	0.98143	15.849	4	2	Median	0.90548	0.94474	13.501	6	4	Median	8923500000	4118800000	4804700000	521450000	267960000	253490000	602640000	317480000	285160000	4608100000	2104600000	2503500000	3191300000	1428800000	1762500000	24440	1208	23163	152704;152705;152706;152707;152708;152709;152710;152711;152712;152713;152714;152715	206735;206736;206737;206738;206739;206740;206741;206742;206743;206744;206745;206746;206747;206748;206749;206750;206751;206752;206753;206754;206755;206756;206757;206758;206759;206760;206761;206762;206763	206739			29	
IHVSYQETQQMQMK	1	Unmodified	1749.8178	0.81782524	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	1	2	2	3	40.888	39.268	2;3	6.7132E-22	34444	160511_QHF_FH_JSI11i_3	146.58	142.52			0.95304	1.0463	28.873	7	2	Median	NaN	NaN	NaN	0	0	Median	0.76424	0.91767	38.059	2	2	Median	0.7239	0.68634	3.6433	2	0	Median	1.2126	1.2258	9.295	3	0	Plateau	797270000	449780000	347490000	0	0	0	21121000	9493100	11627000	298220000	191380000	106830000	477940000	248910000	229030000	24441	3328	23164	152716;152717;152718;152719;152720;152721;152722;152723	206764;206765;206766;206767;206768;206769;206770;206771;206772;206773	206764			9	
IHVTPLIPGK	1	Unmodified	1073.6597	0.65971533	4636	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	47.433	46.868	3	0.00047324	39920	160511_QHF_FH_JSI12i_3	62.463	51.705			0.84443	0.74801	23.36	4	2	Median	0.79886	0.67647	NaN	1	1	Median	0.43038	0.54687	NaN	1	1	Median	0.89259	0.82712	NaN	1	0	Median	0.91726	0.93047	NaN	1	0	Median	235220000	128110000	107100000	9688000	5573300	4114600	11976000	7240200	4735400	94297000	53092000	41205000	119260000	62208000	57047000	24442	4636	23165	152724;152725;152726;152727	206774;206775;206776;206777;206778	206778			5	
IHVVDSGLTFNLPYPLILRPQR	0	Unmodified	2547.4326	0.43256293	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.367	83.646	4	1.5363E-05	47389	160513_QHF_FH_JSI10Kac_6	71.742	57.727			0.9947	1.1674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9947	1.1674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234950000	104580000	130370000	0	0	0	234950000	104580000	130370000	0	0	0	0	0	0	24443	1604	23166	152728	206779	206779			1	
IHVWNGESGIK	1	Unmodified	1238.6408	0.6407708	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	37.58	36.769	2;3	0.00070674	32021	160511_QHF_FH_JSI11i_3	60.598	47.59			0.81858	0.88202	4.8686	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74475	0.85217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89972	0.91291	NaN	1	1	Median	156510000	91366000	65143000	0	0	0	60280000	34711000	25569000	0	0	0	96230000	56655000	39575000	24444	3159	23167	152729;152730;152731	206780;206781;206782	206780			3	
IHVYGYSMAYGPAQHAISTEK	1	Oxidation (M)	2338.1052	0.10521671	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	3	3	4	3	54.19	48.191	3;4	3.1431E-13	25467	160513_QHF_FH_JSI9Kac_6	109.72	106.05			1.0515	1.0649	18.845	13	1	Median	1.4309	1.1573	9.1152	3	0	Median	0.89152	1.027	10.976	3	0	Plateau	1.0678	1.0519	30.352	4	1	Median	1.0515	1.1192	2.8479	3	0	Plateau	1043100000	493150000	549910000	360860000	150860000	210000000	302670000	160050000	142620000	214580000	100870000	113710000	164960000	81368000	83588000	24445	4971	23168	152732;152733;152734;152735;152736;152737;152738;152739;152740;152741;152742;152743;152744	206783;206784;206785;206786;206787;206788;206789;206790;206791;206792;206793;206794;206795;206796;206797;206798;206799;206800;206801;206802;206803;206804;206805;206806	206794		2565	24	
IHVYGYSMAYGPAQHAISTEK	1	Unmodified	2322.1103	0.11030209	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.85	6.47			11						9	6	5	5	4	61.215	56.65	3;4	3.3357E-22	30917	160513_QHF_FH_JSI10Kac_6	143.93	139.82			0.98271	1.0358	16.849	20	6	Median	1.4135	1.1939	22.969	6	1	Median	0.96105	1.1464	7.8315	5	2	Median	0.97977	0.9425	9.8327	5	3	Median	0.9379	0.96049	7.3115	4	0	Median	5702900000	2868700000	2834100000	1122300000	456110000	666170000	2184400000	1104200000	1080200000	1501100000	759860000	741250000	895080000	548500000	346580000	24446	4971	23168	152745;152746;152747;152748;152749;152750;152751;152752;152753;152754;152755;152756;152757;152758;152759;152760;152761;152762;152763;152764	206807;206808;206809;206810;206811;206812;206813;206814;206815;206816;206817;206818;206819;206820;206821;206822;206823;206824;206825;206826;206827;206828;206829;206830;206831;206832;206833;206834;206835;206836;206837;206838;206839;206840;206841;206842;206843;206844;206845;206846;206847;206848;206849;206850;206851;206852;206853	206850			47	
IHVYTFVQK	1	Unmodified	1133.6233	0.62332982	509	O75356	ENTPD5	Ectonucleoside triphosphate diphosphohydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.8	5.63			1						3	1	1	1	1	50.707	43.135	3	0.0016992	22867	160513_QHF_FH_JSI9Kac_6	48.794	40.869			0.80377	0.90058	29.352	4	1	Median	0.67093	0.55613	NaN	1	0	Median	0.67637	0.78848	NaN	1	1	Median	1.0394	1.0368	NaN	1	0	Median	0.95516	1.0286	NaN	1	0	Median	28341000	15684000	12657000	6159100	2944700	3214400	10113000	7658900	2453600	7033800	2573300	4460500	5035400	2506800	2528600	24447	509	23169	152765;152766;152767;152768	206854;206855;206856	206856			2	
IHWLMAALPFTK	1	Unmodified	1426.7795	0.77951289	2994	Q5VW38	GPR107	Protein GPR107	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			86.515	79.355	3	1.5644E-05	43345	160513_QHF_FH_JSI9Kac_6	99.215	89.682			0.52881	0.53465	21.027	2	2	Median	0.7267	0.62036	NaN	1	1	Median	0.3848	0.46079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105760000	62854000	42901000	40053000	22716000	17337000	65702000	40138000	25564000	0	0	0	0	0	0	24448	2994	23170	152769;152770	206857;206858	206857			2	
IHWWENVYGFDMSCIK	1	Unmodified	2083.9284	0.92843832	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	88.01	78.568	3	0.00037756	42067	160513_QHF_FH_JSI12Kac_6	63.614	58.51			1.1585	1.218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1585	1.218	NaN	1	0	Median	38261000	14542000	23720000	0	0	0	0	0	0	0	0	0	38261000	14542000	23720000	24449	4325	23171	152771	206859	206859			1	
IHYIGQNEPELLVAHAYTR	0	Unmodified	2223.1437	0.14365113	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.42		2	9						3	6	5	2	1	65.766	63.67	3;4	2.8293E-08	56006	160511_QHF_FH_JSI11i_3	105.32	96.228			1.2162	1.1588	22.442	13	4	Median	1.6459	1.4023	13.89	5	3	Median	0.9699	1.1588	26.347	5	1	Median	1.0745	1.0068	11.571	2	0	Median	0.88778	0.89068	NaN	1	0	Median	1105100000	529820000	575320000	137760000	51921000	85841000	392500000	185780000	206720000	381840000	175080000	206770000	193040000	117050000	75994000	24450	1355	23172	152772;152773;152774;152775;152776;152777;152778;152779;152780;152781;152782;152783;152784;152785	206860;206861;206862;206863;206864;206865;206866;206867;206868;206869;206870;206871;206872;206873;206874;206875;206876;206877;206878	206861			18	
IHYLDTTTLIEPAPR	0	Unmodified	1738.9254	0.92538508	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	65.207	64.306	2;3	8.4991E-12	55365	160511_QHF_FH_JSI12i_2	119.25	110.87			0.89152	0.94463	8.876	8	2	Median	1.0983	0.93325	3.0605	2	1	Median	0.87708	1.0762	11.136	2	0	Median	0.87262	0.90545	4.6455	2	0	Median	0.84616	0.94733	6.9522	2	1	Median	1065900000	575850000	490010000	216250000	104090000	112160000	289120000	157170000	131950000	317430000	183370000	134060000	243080000	131230000	111850000	24451	1583	23173	152786;152787;152788;152789;152790;152791;152792;152793	206879;206880;206881;206882;206883;206884;206885;206886;206887;206888	206879			10	
IHYLDTTTLIEPVSR	0	Unmodified	1756.9359	0.93594977	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1								1	3	2	69.375	68.455	2;3	2.1537E-05	59930	160511_QHF_FH_JSI11i_2	74.789	69.494			0.96208	0.972	16.248	5	2	Plateau	NaN	NaN	NaN	0	0	Median	0.6504	0.81555	NaN	1	1	Median	0.83778	0.83509	22.753	2	1	Median	0.93494	1.0154	6.1768	2	0	Median	259060000	150140000	108920000	0	0	0	11222000	7628800	3593100	160350000	91619000	68726000	87496000	50892000	36604000	24452	1582	23174	152794;152795;152796;152797;152798;152799	206889;206890;206891;206892;206893;206894;206895;206896	206894			8	
IIAATFLFK	1	Unmodified	1022.6165	0.61645353	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	2	2	3	84.874	83.224	2	1.3681E-05	69187	160511_QHF_FH_JSI9i_3	109.86	91.132			0.99102	0.9545	18.742	9	0	Median	0.99503	0.82602	6.6999	2	0	Median	0.81994	0.96636	1.7471	2	0	Median	0.97757	0.96617	12.113	2	0	Median	1.1495	1.1715	26.997	3	0	Median	3215000000	1471300000	1743700000	481240000	225710000	255530000	435170000	197020000	238150000	555650000	282380000	273270000	1742900000	766200000	976720000	24453	2480	23175	152800;152801;152802;152803;152804;152805;152806;152807;152808	206897;206898;206899;206900;206901;206902;206903;206904;206905;206906;206907;206908;206909;206910;206911	206904			15	
IIAEGANGPTTPEADK	1	Unmodified	1582.7839	0.7838658	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	5.92	8				1	6				2	4	4	5	34.146	29.719	2;3	7.7288E-30	25927	160511_QHF_FH_JSI9i_1	227.93	208.17			1.0407	1.1234	55.065	15	2	Median	3.3822	2.8233	135.04	2	0	Median	0.91996	1.0888	8.8346	4	0	Median	1.0669	1.047	35.657	4	1	Median	1.1955	1.2523	24.224	5	1	Median	2129100000	1024900000	1104100000	434870000	174980000	259890000	572020000	296090000	275940000	499290000	238310000	260970000	622880000	315550000	307330000	24454	762	23176	152809;152810;152811;152812;152813;152814;152815;152816;152817;152818;152819;152820;152821;152822;152823	206912;206913;206914;206915;206916;206917;206918;206919;206920;206921;206922;206923;206924;206925;206926;206927;206928;206929;206930;206931;206932;206933;206934;206935;206936;206937;206938	206929			27	
IIAELNETWEEK	1	Unmodified	1473.7351	0.73512469	411;390	O60333;Q12756;O43896	KIF1B;KIF1A;KIF1C	Kinesin-like protein KIF1B;Kinesin-like protein KIF1A;Kinesin-like protein KIF1C	no	no	0	0	0	0			By MS/MS		2	0		1										1		62.04	61.518	2	0.0012304	53523	160511_QHF_FH_JSI11i_2	66.595	31.084			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24455	411;390	23177	152824	206939	206939			1	
IIAFISWLR	0	Unmodified	1117.6648	0.6648007	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	92.554	84.557	2	2.6819E-07	47147	160513_QHF_FH_JSI11Kac_6	161.68	113.94			0.73792	0.73462	84.527	6	4	Median	1.7484	1.4933	145.02	2	2	Median	0.73019	0.87274	95.177	2	2	Median	0.85337	0.80313	NaN	1	0	Median	0.6381	0.67196	NaN	1	0	Median	2307200000	1225800000	1081500000	488120000	201720000	286400000	1284900000	689440000	595430000	346530000	213600000	132930000	187700000	121010000	66694000	24456	700	23178	152825;152826;152827;152828;152829;152830	206940;206941;206942;206943;206944;206945;206946;206947	206940			8	
IIAFVGSPVEDNEK	1	Unmodified	1516.7773	0.77732386	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.48	8	4	1			3	1	1		4	6	4	4	65.688	62.393	2;3	4.2363E-30	56117	160511_QHF_FH_JSI10i_1	227.94	207.07			0.99246	0.99764	44.14	17	7	Median	1.1902	0.98584	19.339	4	2	Median	0.91463	1.0829	66.658	6	3	Median	1.0341	0.99764	32.483	3	1	Plateau	0.97582	1.0259	30.812	4	1	Median	2282500000	1105700000	1176900000	419010000	175510000	243500000	549360000	283750000	265610000	711370000	346550000	364820000	602790000	299850000	302950000	24457	1842	23179	152831;152832;152833;152834;152835;152836;152837;152838;152839;152840;152841;152842;152843;152844;152845;152846;152847;152848	206948;206949;206950;206951;206952;206953;206954;206955;206956;206957;206958;206959;206960;206961;206962;206963;206964;206965;206966;206967;206968;206969;206970;206971;206972;206973;206974;206975;206976;206977;206978	206963			31	
IIAHFLIQQYLK	1	Unmodified	1485.8708	0.87077073	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	80.841	76.351	2;3	7.1894E-54	69462	160511_QHF_FH_JSI12i_3	182.71	164.97			0.91532	0.87144	21.001	16	0	Median	1.0972	0.94524	15.866	4	0	Median	0.7544	0.84712	7.9013	4	0	Median	0.96826	0.91747	10.916	4	0	Median	1.0923	1.1329	34.852	4	0	Median	19224000000	9540500000	9684000000	4890400000	2483900000	2406600000	9753600000	5220300000	4533300000	2042900000	970250000	1072700000	2537500000	866050000	1671400000	24458	1579	23180	152849;152850;152851;152852;152853;152854;152855;152856;152857;152858;152859;152860;152861;152862;152863;152864	206979;206980;206981;206982;206983;206984;206985;206986;206987;206988;206989;206990;206991;206992;206993;206994;206995;206996;206997;206998;206999;207000;207001;207002;207003;207004;207005;207006;207007;207008;207009;207010;207011;207012	207002			34	
IIAHSNQK	1	Unmodified	909.50321	0.50321468	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			3									3		4.5442	4.5442	2;3	0.00045585	2211	160511_QHF_FH_JSI11i_3	107.67	39.189			1.1798	1.1159	26.136	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1798	1.1159	26.136	2	1	Median	NaN	NaN	NaN	0	0	Median	407590000	219390000	188200000	0	0	0	0	0	0	407590000	219390000	188200000	0	0	0	24459	183	23181	152865;152866;152867	207013;207014;207015;207016	207014			4	
IIAIANYVCR	0	Unmodified	1191.6434	0.64341333	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			68.959	61.283	2	0.0016387	33607	160513_QHF_FH_JSI10Kac_6	79.451	58.504			1.1874	1.4079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1874	1.4079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44314000	15390000	28924000	0	0	0	44314000	15390000	28924000	0	0	0	0	0	0	24460	2752	23182	152868	207017	207017			1	
IIAINSELTQPK	1	Unmodified	1325.7555	0.7554662	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.09	2	5					1			1	1	2	4	57.247	54.869	2	7.5555E-05	48072	160511_QHF_FH_JSI9i_2	94.297	67.782			1.1244	1.1124	49	7	4	Median	1.0486	0.90058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1507	1.1803	8.3757	2	0	Median	1.0149	1.0852	67.57	4	4	Median	205780000	93631000	112150000	38039000	18171000	19867000	0	0	0	42207000	21119000	21089000	125540000	54341000	71194000	24461	3790	23183	152869;152870;152871;152872;152873;152874;152875;152876	207018;207019;207020;207021;207022;207023;207024;207025	207023			8	
IIALAEPPVIGSTAHQWLGPEFLTMFFFHYMK	1	Unmodified	3690.8771	0.87712502	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			99.854	92.416	4	7.935E-80	52480	160513_QHF_FH_JSI9Kac_6	202.62	186.55			0.94622	0.96463	4.7104	2	0	Median	1.1477	0.9973	NaN	1	0	Median	0.7801	0.93303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	843120000	436400000	406720000	275940000	126100000	149840000	567180000	310300000	256870000	0	0	0	0	0	0	24462	15	23184	152877;152878	207026;207027;207028;207029	207027			4	
IIALDGDTK	1	Unmodified	944.51786	0.51786169	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.37	4	4	3			3	2			5	5	1	5	34.521	30.459	2	1.2638E-16	28844	160511_QHF_FH_JSI10i_1	178.83	114.05			0.70341	0.79233	52.209	16	8	Median	1.2299	1.0191	68.23	5	3	Median	0.61259	0.75013	53.142	5	3	Median	0.93427	0.92054	NaN	1	0	Median	0.70102	0.76588	49.407	5	2	Median	27402000000	13201000000	14202000000	7367800000	3142000000	4225800000	7477900000	4043900000	3434000000	6831600000	3190200000	3641500000	5725000000	2824500000	2900600000	24463	1322	23185	152879;152880;152881;152882;152883;152884;152885;152886;152887;152888;152889;152890;152891;152892;152893;152894	207030;207031;207032;207033;207034;207035;207036;207037;207038;207039;207040;207041;207042;207043;207044;207045;207046;207047;207048;207049;207050;207051;207052;207053	207040			24	
IIAMTCTHAALK	1	Unmodified	1328.6945	0.69446263	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.46	35.332	3	0.039011	29973	160511_QHF_FH_JSI12i_3	34.179	26.568			1.305	1.4333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.305	1.4333	NaN	1	0	Median	73936000	44030000	29905000	0	0	0	0	0	0	0	0	0	73936000	44030000	29905000	24464	408	23186	152895	207054	207054			0	
IIANALSSEPACLAEIEEDK	1	Unmodified	2172.062	0.062014494	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	2	2	81.268	80.853	2;3	3.7105E-54	73624	160511_QHF_FH_JSI11i_1	268.59	246.01			0.92621	1.0617	30.944	7	5	Median	1.3795	1.1094	NaN	1	0	Median	0.9896	1.138	7.3947	2	2	Median	0.68726	0.65899	40.056	2	1	Median	0.87121	0.8922	24.594	2	2	Median	291660000	160470000	131190000	19757000	11052000	8704200	64649000	32406000	32243000	141030000	79976000	61053000	66221000	37034000	29187000	24465	2094	23187	152896;152897;152898;152899;152900;152901;152902;152903	207055;207056;207057;207058;207059;207060;207061;207062;207063;207064;207065	207057			11	
IIAPANMERPVR	0	Unmodified	1365.7551	0.75508905	3484	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.867	35.409	3	0.05385	28800	160511_QHF_FH_JSI9i_3	28.806	20.501			1.2247	1.0038	NaN	1	0	Median	1.2247	1.0038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61525000	25283000	36242000	61525000	25283000	36242000	0	0	0	0	0	0	0	0	0	24466	3484	23188	152904	207066	207066			1	
IIAPPER	0	Unmodified	794.46504	0.46503826	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.48	4	4	4			2	2	3	4	5	4	7	7	24.952	20.48	2	8.084E-05	13144	160513_QHF_FH_JSI11Kac_4	121.87	38.644			0.86568	0.94236	20.293	23	0	Median	1.4291	1.1428	9.1971	5	0	Median	0.75628	0.87948	25.993	4	0	Median	0.75846	0.75779	11.603	7	0	Median	0.91785	0.99633	7.6055	7	0	Median	24540000000	12239000000	12301000000	5181300000	2084500000	3096800000	5534200000	2964500000	2569700000	8192300000	4343600000	3848700000	5632200000	2846200000	2786000000	24467	1916;2015;2062;2070;2865	23189	152905;152906;152907;152908;152909;152910;152911;152912;152913;152914;152915;152916;152917;152918;152919;152920;152921;152922;152923;152924;152925;152926;152927	207067;207068;207069;207070;207071;207072;207073;207074;207075;207076;207077;207078;207079;207080;207081;207082;207083;207084;207085;207086;207087;207088;207089;207090;207091;207092	207079			26	
IIAPPERK	1	Unmodified	922.56	0.56000128	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.49	4	7	8					2	8	8	8	7	6	18.153	15.089	2;3	0.00053359	10886	160511_QHF_FH_JSI12i_3	105.39	44.603			0.90987	0.93056	16.265	29	1	Median	1.1465	0.98684	16.613	8	0	Median	0.83714	0.93164	14.257	8	1	Median	0.94115	0.93056	4.0498	7	0	Median	0.7838	0.84634	19.747	6	0	Median	108360000000	54494000000	53866000000	30058000000	14118000000	15940000000	32585000000	17034000000	15551000000	32796000000	16279000000	16517000000	12922000000	7064000000	5858300000	24468	1916;2015;2062;2070;2865	23190	152928;152929;152930;152931;152932;152933;152934;152935;152936;152937;152938;152939;152940;152941;152942;152943;152944;152945;152946;152947;152948;152949;152950;152951;152952;152953;152954;152955;152956	207093;207094;207095;207096;207097;207098;207099;207100;207101;207102;207103;207104;207105;207106;207107;207108;207109;207110;207111;207112;207113;207114;207115;207116;207117;207118;207119;207120;207121;207122;207123;207124;207125;207126;207127;207128;207129;207130;207131;207132;207133;207134;207135;207136;207137;207138;207139;207140;207141;207142;207143;207144;207145;207146;207147;207148;207149;207150;207151;207152;207153;207154;207155;207156;207157;207158;207159;207160;207161	207157			68	
IIASSPEMNLPTVSALR	0	Unmodified	1797.9659	0.96586969	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.213	80.43	2	2.6843E-08	70731	160511_QHF_FH_JSI11i_2	132.79	104.59			1.1463	1.2059	9.7793	4	2	Median	1.2465	1.0473	NaN	1	0	Median	1.0359	1.2614	NaN	1	0	Median	1.0829	1.1528	NaN	1	1	Median	1.2136	1.3014	NaN	1	1	Median	111730000	50496000	61237000	25085000	10354000	14731000	23281000	13152000	10129000	38967000	18192000	20775000	24399000	8797800	15602000	24469	4000	23191	152957;152958;152959;152960	207162;207163;207164;207165	207164			4	
IIASSPEMNLPTVSALRK	1	Unmodified	1926.0608	0.060832703	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	3	1	1	71.108	70.195	3	2.4181E-23	57611	160511_QHF_FH_JSI9i_3	175.39	154.16			0.85742	0.93274	25.374	6	4	Median	1.175	0.94002	NaN	1	0	Median	0.78785	0.92551	16.256	3	2	Median	1.4042	1.3363	NaN	1	1	Median	0.63035	0.64181	NaN	1	1	Median	929590000	465380000	464210000	240260000	103460000	136800000	459090000	255880000	203210000	188670000	84268000	104410000	41568000	21776000	19792000	24470	4000	23192	152961;152962;152963;152964;152965;152966	207166;207167;207168;207169;207170;207171;207172;207173	207169			8	
IIASSPEMNLPTVSALRK	1	Oxidation (M)	1942.0557	0.055747325	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			60.944	59.42	3	0.0015112	49757	160511_QHF_FH_JSI10i_3	51.089	40.75			0.3709	0.3597	10.524	2	2	Median	0.41045	0.3339	NaN	1	1	Median	0.33517	0.38749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122140000	82159000	39978000	80224000	54901000	25323000	41913000	27258000	14655000	0	0	0	0	0	0	24471	4000	23192	152967;152968	207174;207175	207174		2372	2	
IIATAHIK	1	Unmodified	865.53854	0.53853756	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	3.69		3	8						1	2	4	3	3	18.293	17.072	2;3	0.0035804	13429	160511_QHF_FH_JSI12i_3	44.753	35.981			1.7174	1.608	55.413	12	4	Median	2.3127	1.9436	34.63	2	2	Median	0.77779	0.92386	66.416	4	2	Median	1.8308	1.7304	48.432	3	0	Median	1.7972	1.7964	64.728	3	0	Plateau	2994300000	1294600000	1699700000	131960000	51223000	80734000	498270000	273370000	224900000	1070800000	451870000	618910000	1293300000	518100000	775160000	24472	5739	23193	152969;152970;152971;152972;152973;152974;152975;152976;152977;152978;152979;152980	207176;207177;207178;207179;207180;207181;207182;207183;207184;207185	207185			10	
IIATVLMTEDIK	1	Unmodified	1345.7527	0.75268901	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	76.316	75.574	2	2.7945E-11	65226	160511_QHF_FH_JSI12i_2	152.54	114.99			0.77057	0.82122	17.759	5	0	Median	1.1162	0.98488	NaN	1	0	Median	0.65499	0.82122	NaN	1	0	Median	0.71329	0.70059	20.509	2	0	Median	0.77057	0.86049	NaN	1	0	Median	522900000	275760000	247140000	102000000	53049000	48954000	95437000	57254000	38183000	205290000	100380000	104910000	120170000	65084000	55089000	24473	2217	23194	152981;152982;152983;152984;152985	207186;207187;207188;207189;207190;207191;207192;207193;207194	207186			9	
IIATVLMTEDIK	1	Oxidation (M)	1361.7476	0.74760363	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	14.7	0.471							1	2				1	2	73.054	62.371	2	0.001785	33384	160513_QHF_FH_JSI11Kac_5	78.934	61.498			1.6773	1.7733	40.477	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3747	2.3609	NaN	1	1	Median	1.1847	1.3319	NaN	1	1	Median	8960700	3797500	5163300	0	0	0	0	0	0	4558700	1411900	3146800	4402000	2385600	2016400	24474	2217	23194	152986;152987;152988	207195;207196;207197	207196		1844	3	
IIAVFKPK	2	Unmodified	914.59532	0.59532415	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	37.699	37.148	3	0.0049201	31159	160511_QHF_FH_JSI12i_3	51.854	35.652			0.28739	0.29019	16.325	3	3	Plateau	0.29054	0.23315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.24057	0.21885	NaN	1	1	Median	0.28739	0.2981	NaN	1	1	Median	167680000	120000000	47686000	58140000	38679000	19461000	0	0	0	39412000	29795000	9617600	70132000	51524000	18608000	24475	4422	23195	152989;152990;152991;152992;152993;152994	207198;207199;207200;207201;207202;207203	207203			6	
IIAVSFPAGCSEESYLHNLQEVTR	0	Unmodified	2719.3276	0.32756509	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.878	91.835	3	1.8245E-12	79670	160511_QHF_FH_JSI12i_3	99.999	97.158			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24476	3024	23196	152995	207204	207204			1	
IICILSHPIK	1	Unmodified	1192.7002	0.70019993	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	1	3	53.268	52.497	2;3	2.3466E-05	44661	160511_QHF_FH_JSI12i_3	107.47	69.99			1.7385	1.3871	121.89	7	6	Median	1.7385	1.3871	NaN	1	1	Median	1.1297	1.2975	117.08	2	2	Median	0.48083	0.4564	NaN	1	1	Median	3.0092	3.0592	164.84	3	2	Median	721420000	323600000	397830000	147750000	55123000	92630000	153770000	81500000	72266000	204470000	145210000	59261000	215440000	41771000	173670000	24477	1368	23197	152996;152997;152998;152999;153000;153001;153002	207205;207206;207207;207208;207209;207210;207211	207210			6	
IICQGFTGK	1	Unmodified	1022.5219	0.52190122	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.67	5.91		1	1					1				1	2	32.517	26.931	2	0.0038164	22749	160511_QHF_FH_JSI12i_3	59.245	40.463			1.0879	1.1253	32.102	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89852	0.89678	NaN	1	0	Median	1.3171	1.4121	NaN	1	0	Median	91123000	39448000	51676000	0	0	0	0	0	0	8641900	4724600	3917300	82481000	34723000	47758000	24478	1800	23198	153003;153004;153005	207212;207213;207214	207214			3	
IIDAALR	0	Unmodified	770.46504	0.46503826	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.39	2	6	1				3	3	1	1	5	5	5	32.478	27.975	2	0.018633	22755	160511_QHF_FH_JSI12i_2	59.609	59.609			0.91564	0.93007	21.298	16	0	Median	1.2303	1.0195	NaN	1	0	Median	0.823	0.97733	24.373	5	0	Median	0.88643	0.8819	6.6675	5	0	Median	0.95463	0.96619	27.405	5	0	Median	7174000000	3489500000	3684500000	1434600000	590630000	843960000	1871200000	978960000	892280000	2483600000	1241900000	1241700000	1384600000	678100000	706510000	24479	1179	23199	153006;153007;153008;153009;153010;153011;153012;153013;153014;153015;153016;153017;153018;153019;153020;153021	207215;207216;207217;207218;207219;207220;207221;207222;207223	207216			9	
IIDDSEITKEDDALWPPPDR	1	Unmodified	2324.1172	0.11722119	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	1	By MS/MS				1	0	1									1				74.121	73.204	3	0.0024362	65090	160511_QHF_FH_JSI9i_1	45.094	30.633			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24480	1952;3963	23200	153022	207224	207224			1	
IIDEDGLLNLIR	0	Unmodified	1382.7769	0.77692993	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	98.61	98.445	2	0.061879	84796	160511_QHF_FH_JSI12i_2	33.961	23.131			0.94604	1.1372	9.9971	4	0	Linear	1.1695	1.0317	NaN	1	0	Median	0.73988	0.91827	NaN	1	0	Median	1.0627	1.115	NaN	1	0	Median	0.84218	0.90284	NaN	1	0	Median	112270000	60204000	52069000	27649000	13975000	13674000	24008000	12951000	11056000	37598000	20795000	16803000	23019000	12482000	10536000	24481	1430	23201	153023;153024;153025;153026	207225	207225			1	
IIDETMAQLQDLK	1	Unmodified	1516.7807	0.78069468	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	68.523	67.86	3	4.1425E-05	61704	160511_QHF_FH_JSI11i_1	77.279	65.359			1.0465	1.0157	4.4009	3	0	Plateau	1.3544	1.1006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0465	1.0157	NaN	1	0	Median	1.0365	1.091	NaN	1	0	Median	205380000	88132000	117250000	61208000	22993000	38215000	0	0	0	81835000	36919000	44916000	62340000	28220000	34120000	24482	2560	23202	153027;153028;153029	207226;207227;207228	207226			3	
IIDEVVNK	1	Unmodified	928.52295	0.52294707	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	2	3	27.328	25.689	2	0.0028908	22851	160511_QHF_FH_JSI12i_1	83.753	47.872			1.938	2.1018	117.13	7	7	Median	5.405	4.5185	NaN	1	1	Median	1.5076	1.7921	NaN	1	1	Median	0.7484	0.71949	189.49	2	2	Median	1.938	2.1018	106.28	3	3	Median	2375000000	1219900000	1155200000	337950000	43218000	294730000	441630000	234810000	206820000	662260000	430860000	231390000	933180000	510960000	422220000	24483	731	23203	153030;153031;153032;153033;153034;153035;153036	207229;207230;207231;207232;207233;207234;207235	207231			7	
IIDFLSALEGFK	1	Unmodified	1351.7388	0.73875351	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	102.37	102.26	2	1.1251E-10	88173	160511_QHF_FH_JSI12i_2	143.89	102.86			1.0122	0.9455	15.534	5	0	Median	1.2196	1.0148	10.004	2	0	Median	0.63385	0.79644	NaN	1	0	Median	0.83167	0.84549	NaN	1	0	Median	1.0122	1.14	NaN	1	0	Median	1552700000	860400000	692260000	326600000	158320000	168280000	310770000	191470000	119300000	442930000	241760000	201170000	472350000	268840000	203510000	24484	1778	23204	153037;153038;153039;153040;153041;153042	207236;207237;207238;207239;207240;207241;207242;207243;207244;207245	207237			10	
IIDGDGTDMFDIVTEK	1	Unmodified	1767.8237	0.8236817	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	86.595	86.069	2	1.9235E-05	78553	160511_QHF_FH_JSI11i_1	115.14	88.463			0.9295	0.92293	15.472	5	2	Median	0.89155	0.73601	12.384	2	2	Median	0.76703	0.92293	NaN	1	0	Median	1.0393	0.97756	NaN	1	0	Median	0.9295	0.95303	NaN	1	0	Median	284830000	146440000	138390000	87833000	45613000	42220000	79015000	42436000	36578000	63417000	30705000	32712000	54570000	27690000	26880000	24485	5745	23205	153043;153044;153045;153046;153047	207246;207247;207248;207249;207250;207251;207252;207253;207254;207255;207256;207257	207248			12	
IIDGLLVMR	0	Unmodified	1028.6052	0.60523691	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	4.8	5.6		4							1	1	1	2	1	72.649	70.075	2	0.010335	37009	160513_QHF_FH_JSI11Kac_6	57.722	36.434			0.98884	1.1194	13.191	5	0	Median	1.2904	1.1194	NaN	1	0	Median	0.91518	1.1468	NaN	1	0	Median	1.1461	1.1355	25.773	2	0	Median	0.95537	1.0682	NaN	1	0	Median	559910000	263790000	296120000	78640000	39170000	39470000	95395000	50098000	45297000	266830000	121770000	145060000	119040000	52752000	66293000	24486	335	23206	153048;153049;153050;153051;153052	207258;207259	207258			2	
IIDINYYPVPEACLSNK	1	Unmodified	2007.9976	0.99756374	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	83.87	83.459	2;3	1.0112E-07	76133	160511_QHF_FH_JSI11i_1	132.97	116.87			1.0446	1.1299	14.79	7	1	Median	1.4089	1.1299	NaN	1	1	Median	0.90613	1.0647	13.095	2	0	Median	0.96414	0.93304	12.404	2	0	Median	1.203	1.2716	2.2507	2	0	Median	473960000	253140000	220830000	12038000	3510000	8527600	176060000	107260000	68802000	144650000	77018000	67630000	141220000	65353000	75866000	24487	1242	23207	153053;153054;153055;153056;153057;153058;153059;153060	207260;207261;207262;207263;207264;207265;207266;207267;207268;207269;207270;207271	207262			12	
IIDISDVFR	0	Unmodified	1076.5866	0.58660996	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.765	83.028	2	0.0024995	71725	160511_QHF_FH_JSI12i_2	64.42	51.154			0.94537	0.88681	22.108	4	0	Median	0.88575	0.74504	NaN	1	0	Median	0.62015	0.73995	NaN	1	0	Median	1.0289	1.0556	NaN	1	0	Median	1.009	1.1183	NaN	1	0	Median	276230000	133500000	142720000	75317000	35954000	39362000	64424000	38696000	25729000	58528000	17756000	40772000	77958000	41097000	36862000	24488	3119	23208	153061;153062;153063;153064	207272;207273;207274	207272			2	
IIDKEGDDYEVIPNSNFYVSR	1	Unmodified	2472.1809	0.18088408	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1	By MS/MS				2	0		2								2				69.61	68.733	3	0.0017605	60582	160511_QHF_FH_JSI9i_2	47.392	20.638			0.99233	0.82812	18.388	2	2	Median	0.99233	0.82812	18.388	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49450000	24046000	25403000	49450000	24046000	25403000	0	0	0	0	0	0	0	0	0	24489	4989	23209	153065;153066	207275;207276	207275			2	
IIDPLPPIDHSEIDYPPFEK	1	Unmodified	2334.1784	0.17836488	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	4	2	1	94.185	93.943	3	1.5727E-05	82463	160511_QHF_FH_JSI9i_2	87.352	79.548			0.90273	0.92715	16.344	8	6	Median	1.0179	0.88287	NaN	1	1	Median	0.78298	0.95981	14.704	4	4	Median	0.92619	0.92583	1.2347	2	1	Median	1.2982	1.3264	NaN	1	0	Median	464450000	268050000	196400000	56437000	27887000	28550000	235460000	145090000	90367000	146790000	82394000	64395000	25771000	12682000	13088000	24490	3377	23210	153067;153068;153069;153070;153071;153072;153073;153074	207277;207278;207279;207280;207281;207282;207283;207284;207285;207286;207287	207284			11	
IIDPPLREGK	1	Unmodified	1136.6554	0.65535823	5836				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	3	1	23.574	22.853	2;3	0.0093974	18239	160511_QHF_FH_JSI9i_3	66.258	0	+		0.8555	0.90315	19.87	9	0	Median	1.1247	0.90795	0.3063	3	0	Plateau	0.84405	0.96592	0	2	0	Median	0.8555	0.80376	4.9008	3	0	Plateau	0.49595	0.50738	NaN	1	0	Median	5999700000	3045700000	2953900000	1858000000	876150000	981850000	1765300000	909830000	855500000	2113300000	1102500000	1010800000	262990000	157190000	105800000	24491	5836	23211	153075;153076;153077;153078;153079;153080;153081;153082;153083	207288;207289;207290;207291;207292;207293;207294;207295;207296;207297;207298;207299;207300	207294			13	
IIDRIHGTEEGQQILK	1	Unmodified	1849.0058	0.005760665	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		39.313	38.561	3	0.030032	33697	160511_QHF_FH_JSI11i_3	36.638	16.799			0.33479	0.35119	250.32	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7885	2.0618	NaN	1	1	Median	0.062672	0.059817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	199100000	164160000	34942000	0	0	0	32414000	12471000	19943000	166690000	151690000	14999000	0	0	0	24492	2587	23212	153084;153085	207301;207302	207301			2	
IIDSLFNTVTDK	1	Unmodified	1364.7187	0.71874635	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		71.524	70.764	2	3.2489E-07	62309	160511_QHF_FH_JSI9i_2	127.42	106.55			0.86502	0.64258	16.351	4	3	Linear	1.0018	0.84325	NaN	1	0	Median	0.52627	0.64258	2.2366	2	2	Median	0.56913	0.57509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	547810000	358790000	189010000	92850000	46802000	46048000	204430000	140520000	63906000	250530000	171470000	79059000	0	0	0	24493	440	23213	153086;153087;153088;153089	207303;207304;207305;207306;207307	207303			5	
IIDSLFNTVTDKK	2	Unmodified	1492.8137	0.81370936	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	60.892	60.686	2;3	1.3156E-05	53907	160511_QHF_FH_JSI11i_3	115.35	101.67			1.7774	1.8017	88.41	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6104	2.4963	NaN	1	1	Median	1.2102	1.3004	100.78	3	3	Median	916180000	341100000	575080000	0	0	0	0	0	0	181450000	57187000	124260000	734740000	283920000	450820000	24494	440	23214	153090;153091;153092;153093	207308;207309;207310;207311	207308			4	
IIDVDALWSHR	0	Unmodified	1323.6935	0.69353465	4539	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.257	71.96	3	0.029688	62468	160511_QHF_FH_JSI12i_3	26.627	21.528			2.5231	2.7112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5231	2.7112	NaN	1	1	Median	19559000	4984700	14575000	0	0	0	0	0	0	0	0	0	19559000	4984700	14575000	24495	4539	23215	153094	207312	207312			1	
IIDVVYNASNNELVR	0	Unmodified	1717.8999	0.89989861	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	6.09	8	9	1				2	6		8	7	5	6	69.429	65.787	2;3	2.9051E-81	60536	160511_QHF_FH_JSI12i_1	251.03	191.01			0.88906	1.0177	40.698	24	4	Median	1.2984	1.0644	58.791	6	2	Median	0.83872	1.0186	26.492	7	1	Median	1.0669	1.1026	16.551	5	0	Linear	0.7807	0.87097	38.644	6	1	Median	11198000000	5490800000	5706800000	1863100000	849080000	1014000000	3222700000	1763100000	1459600000	3394800000	1523000000	1871800000	2717000000	1355600000	1361400000	24496	1985	23216	153095;153096;153097;153098;153099;153100;153101;153102;153103;153104;153105;153106;153107;153108;153109;153110;153111;153112;153113;153114;153115;153116;153117;153118;153119;153120	207313;207314;207315;207316;207317;207318;207319;207320;207321;207322;207323;207324;207325;207326;207327;207328;207329;207330;207331;207332;207333;207334;207335;207336;207337;207338;207339;207340;207341;207342;207343;207344;207345;207346;207347;207348;207349;207350;207351;207352;207353;207354;207355	207324			43	
IIEDPAQSSGFHPSGSVVAVGTLTGR	0	Unmodified	2581.3136	0.31362958	131	O00423	EML1	Echinoderm microtubule-associated protein-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		72.2	71.474	3	7.1905E-05	63858	160511_QHF_FH_JSI11i_3	49.638	27.262			0.8485	0.79108	0.43726	2	2	Median	0.8896	0.78864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8093	0.79353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29250000	20051000	9199000	15943000	10811000	5132800	0	0	0	13306000	9240200	4066200	0	0	0	24497	131	23217	153121;153122;153123	207356;207357;207358	207356			3	
IIEDPAR	0	Unmodified	812.43922	0.43921744	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	15.567	15.152	2	0.048713	12910	160511_QHF_FH_JSI12i_1	43.124	6.9381			0.95809	1.0629	28.76	6	0	Median	1.4487	1.2255	NaN	1	0	Median	0.83782	1.0026	33.094	2	0	Median	1.0136	1.0057	50.913	2	0	Median	0.89677	0.92191	NaN	1	0	Median	926300000	464360000	461940000	90926000	26894000	64032000	304610000	148470000	156140000	341490000	175840000	165640000	189280000	113150000	76123000	24498	737	23218	153124;153125;153126;153127;153128;153129	207359	207359			1	
IIEDQNQSK	1	Unmodified	1073.5353	0.53530267	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.1311	7.4468	2	0.02334	5064	160511_QHF_FH_JSI9i_1	41.631	15.217			1.0306	0.83585	NaN	1	0	Median	1.0306	0.83585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59039000	22421000	36618000	59039000	22421000	36618000	0	0	0	0	0	0	0	0	0	24499	2691	23219	153130	207360	207360			1	
IIEDQQESLNK	1	Unmodified	1315.662	0.66195975	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	26.292	22.368	2	7.6326E-13	19435	160511_QHF_FH_JSI10i_1	142.43	88.27			0.82323	0.94469	36.506	7	2	Median	1.7252	1.3984	NaN	1	0	Median	0.64364	0.7626	34.402	2	1	Median	0.87781	0.85949	13.367	2	0	Median	0.82577	0.88582	63.999	2	1	Median	3737600000	1907200000	1830400000	889380000	319450000	569930000	803800000	446770000	357040000	782830000	440220000	342610000	1261600000	700780000	560800000	24500	840	23220	153131;153132;153133;153134;153135;153136;153137	207361;207362;207363;207364;207365;207366;207367;207368;207369;207370;207371	207366			11	
IIEDQQESLNKWK	2	Acetyl (K)	1671.8468	0.84680041	840	P05455	SSB	Lupus La protein	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			63.899	53.193	2	0.024374	28988	160513_QHF_FH_JSI10Kac_4	56.783	22.404			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1258100	1258100	0	0	0	0	1258100	1258100	0	0	0	0	0	0	0	24501	840	23221	153138	207372	207372	492		1	
IIEDTVVPFTVSSSSADQLSTSSSMTEGSGTMNK	1	Unmodified	3492.6124	0.61237488	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	87.356	87.054	3	5.1133E-11	79042	160511_QHF_FH_JSI10i_1	66.378	60.474			0.84584	0.93098	31.18	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63933	0.74678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.119	1.1606	NaN	1	1	Median	23190000	14595000	8594900	0	0	0	14674000	11979000	2695700	0	0	0	8515700	2616500	5899200	24502	5463	23222	153139;153140	207373;207374;207375;207376	207376			4	
IIEEAPATIATPAVFEHMEQCAVK	1	Unmodified	2654.3084	0.30840955	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	90.009	89.095	3	0.020271	76845	160511_QHF_FH_JSI12i_2	26.627	19.595			0.71922	0.80127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71922	0.80127	NaN	1	1	Median	15587000	9733900	5852800	0	0	0	0	0	0	0	0	0	15587000	9733900	5852800	24503	2348	23223	153141;153142	207377;207378	207378			2	
IIEETLALK	1	Unmodified	1028.6118	0.61176208	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	51.507	50.699	2	0.010365	43310	160511_QHF_FH_JSI12i_2	50.04	31.31			0.94859	0.96559	16.536	7	0	Median	0.91916	0.77504	10.033	2	0	Median	0.95766	1.1406	NaN	1	0	Median	1.075	1.0426	10.846	2	0	Median	0.90619	0.97974	8.269	2	0	Median	911040000	451110000	459930000	209070000	104840000	104230000	189360000	100870000	88492000	259140000	117150000	141990000	253470000	128250000	125220000	24504	256	23224	153143;153144;153145;153146;153147;153148;153149	207379;207380;207381;207382;207383;207384	207380			6	
IIEGGAAHK	1	Unmodified	894.49232	0.49231565	2330	Q12959	DLG1	Disks large homolog 1	no	no	0	0	0	0			By MS/MS		3	0			1									1		17.414	17.414	3	0.038222	14463	160511_QHF_FH_JSI11i_3	17.819	0			1.124	1.0404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.124	1.0404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	376930000	151640000	225290000	0	0	0	0	0	0	376930000	151640000	225290000	0	0	0	24505	2330	23225	153150	207385	207385			1	
IIEGTEVVQEIQNK	1	Unmodified	1598.8516	0.85155143	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.371	61.726	3	0.00026667	56183	160511_QHF_FH_JSI12i_1	78.486	63.099			0.9013	0.92953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9013	0.92953	NaN	1	1	Median	34833000	18726000	16107000	0	0	0	0	0	0	0	0	0	34833000	18726000	16107000	24506	4286	23226	153151	207386	207386			1	
IIEIEDEAEK	1	Unmodified	1187.5921	0.59214885	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	38.697	38.282	2	1.6108E-05	33751	160511_QHF_FH_JSI11i_1	111.61	78.056			0.40844	0.42313	67.16	4	4	Median	NaN	NaN	NaN	0	0	Median	0.68069	0.80812	94.802	2	2	Median	0.44564	0.4331	NaN	1	1	Median	0.37435	0.3942	NaN	1	1	Median	836970000	644160000	192820000	0	0	0	316760000	243720000	73035000	293460000	226320000	67135000	226760000	174110000	52646000	24507	2494	23227	153152;153153;153154;153155	207387;207388;207389;207390	207387			4	
IIEKVIHR	1	Acetyl (K)	1048.6393	0.63931423	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.104	28.623	3	0.00099067	15852	160513_QHF_FH_JSI11Kac_6	87.308	50.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14389000	14389000	0	0	0	0	0	0	0	14389000	14389000	0	0	0	0	24508	2545	23228	153156	207391	207391	2530		1	
IIELPFQNK	1	Unmodified	1100.623	0.62299547	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.88	4	4	4				1	4		4	4	4	5	70.608	66.969	2	3.5881E-16	61228	160511_QHF_FH_JSI10i_1	170.32	112.76			0.99189	1.0877	10.356	17	0	Median	1.2899	1.101	3.0367	4	0	Median	0.83139	1.0159	11.664	4	0	Median	0.95764	0.93582	15.954	4	0	Median	1.0466	1.1022	7.2673	5	0	Median	5202800000	2549500000	2653400000	936930000	433890000	503040000	1308500000	706300000	602170000	1720700000	845350000	875370000	1236700000	563950000	672790000	24509	1464	23229	153157;153158;153159;153160;153161;153162;153163;153164;153165;153166;153167;153168;153169;153170;153171;153172;153173	207392;207393;207394;207395;207396;207397;207398;207399;207400;207401;207402;207403;207404;207405;207406;207407;207408;207409;207410;207411;207412;207413;207414;207415;207416;207417;207418;207419;207420;207421;207422;207423;207424;207425;207426;207427;207428;207429;207430;207431;207432;207433;207434;207435;207436	207411			44	
IIENAENEYQTAISENYQTMSDTTFK	1	Unmodified	3039.3655	0.36552632	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	81.671	81.274	2;3	6.399E-70	72186	160511_QHF_FH_JSI9i_1	221.43	219.02			1.0009	0.95983	35.163	6	0	Median	1.0179	0.8478	NaN	1	0	Median	1.3474	1.5694	40.532	2	0	Median	0.88022	0.84995	3.0815	2	0	Median	1.0107	1.0605	NaN	1	0	Median	1485800000	726020000	759790000	204230000	81516000	122720000	459860000	268910000	190950000	370080000	173700000	196380000	451640000	201900000	249740000	24510	1788	23230	153174;153175;153176;153177;153178;153179	207437;207438;207439;207440;207441;207442;207443;207444;207445;207446;207447;207448;207449;207450;207451	207450			15	
IIENELEGFGIR	0	Unmodified	1388.73	0.72997974	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	72.259	71.487	2	2.816E-08	62663	160511_QHF_FH_JSI11i_2	140.16	68.663			0.90271	0.94361	11.78	4	0	Median	1.0853	0.93008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86835	0.84966	16.872	2	0	Median	0.8741	0.96914	NaN	1	0	Median	429660000	232440000	197220000	76950000	41280000	35670000	0	0	0	227190000	120840000	106350000	125520000	70315000	55202000	24511	5505	23231	153180;153181;153182;153183	207452;207453;207454;207455	207455			4	
IIENGENEK	1	Unmodified	1044.5088	0.50875357	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.3346	7.9852	2	1.754E-06	5773	160511_QHF_FH_JSI10i_1	130.27	66.706			0.72279	0.76399	5.2242	4	0	Median	0.99274	0.79697	NaN	1	0	Median	0.65309	0.7589	NaN	1	0	Median	0.72351	0.70393	NaN	1	0	Median	0.72207	0.76912	NaN	1	0	Median	1225900000	631450000	594480000	256880000	114280000	142610000	333160000	195390000	137770000	296120000	145700000	150410000	339760000	176080000	163680000	24512	5576	23232	153184;153185;153186;153187	207456;207457;207458;207459;207460;207461	207459			6	
IIEPIQSR	0	Unmodified	954.54983	0.54983053	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4									3	2	2	28.36	27.698	2	0.0014643	23261	160511_QHF_FH_JSI12i_2	89.142	52.957			0.9621	1.0768	17.64	5	1	Median	NaN	NaN	NaN	0	0	Median	0.91055	1.0913	19.426	2	1	Median	0.9621	0.93222	NaN	1	0	Median	1.1398	1.229	18.697	2	0	Median	577170000	310860000	266300000	0	0	0	261480000	159990000	101490000	97208000	44388000	52820000	218480000	106490000	111990000	24513	1429	23233	153188;153189;153190;153191;153192;153193;153194	207462;207463;207464;207465;207466	207462			5	
IIEPLTSR	0	Unmodified	927.53893	0.53893149	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	33.855	32.962	2	0.032061	28870	160511_QHF_FH_JSI10i_2	41.227	0			1.1003	1.094	11.389	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73912	0.89555	NaN	1	0	Median	1.1003	1.0965	NaN	1	0	Median	0.80318	0.90522	NaN	1	0	Median	496430000	251120000	245310000	0	0	0	142060000	76362000	65702000	203500000	96391000	107110000	150860000	78365000	72499000	24514	1428	23234	153195;153196;153197	207467	207467			1	
IIEQLSPQAATSR	0	Unmodified	1412.7623	0.7623425	2210	Q03468;P0DP91	ERCC6	DNA excision repair protein ERCC-6	yes	no	0	0	0	0				By MS/MS	1	0	1												1	40.26	39.647	2	0.0024262	35821	160511_QHF_FH_JSI12i_1	67.385	29.082			1.0875	1.1093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0875	1.1093	NaN	1	1	Median	83546000	42257000	41289000	0	0	0	0	0	0	0	0	0	83546000	42257000	41289000	24515	2210	23235	153198	207468	207468			1	
IIESIIEESQK	1	Unmodified	1287.6922	0.69219725	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	4.58	7	4					2			2	3	2	6	49.661	47.33	2	2.7722E-06	42572	160511_QHF_FH_JSI10i_1	117.7	75.099			1.9063	1.6779	91.224	13	13	Median	2.6758	2.2141	39.215	2	2	Median	0.62438	0.76551	97.79	3	3	Median	0.7966	0.77174	154.11	2	2	Median	1.1127	1.1554	91.036	6	6	Median	1116400000	517070000	599300000	147510000	43605000	103900000	294370000	164150000	130220000	230430000	114290000	116140000	444050000	195020000	249030000	24516	2902	23236	153199;153200;153201;153202;153203;153204;153205;153206;153207;153208;153209;153210;153211	207469;207470;207471;207472;207473;207474;207475;207476;207477;207478;207479;207480;207481	207475			13	
IIETLTQQLQAK	1	Unmodified	1384.7926	0.79257999	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.2	6	8	5				3			5	7	6	4	56.614	54.381	2	3.0344E-06	48790	160511_QHF_FH_JSI10i_1	121.6	74.416			1.922	1.7301	108.39	19	18	Median	2.1032	1.7301	120.13	5	5	Median	0.96309	1.17	108.47	6	6	Median	1.0338	1.0151	123.21	5	4	Median	2.4655	2.6671	126.74	3	3	Median	3197900000	1672800000	1525100000	519040000	258670000	260360000	766490000	470210000	296280000	1226500000	603530000	622950000	685870000	340380000	345500000	24517	5313	23237	153212;153213;153214;153215;153216;153217;153218;153219;153220;153221;153222;153223;153224;153225;153226;153227;153228;153229;153230;153231;153232;153233	207482;207483;207484;207485;207486;207487;207488;207489;207490;207491;207492;207493;207494;207495;207496;207497;207498;207499;207500;207501;207502;207503;207504;207505	207492			24	
IIETPGIR	0	Unmodified	897.52837	0.5283668	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.91	4	5	3				1	4		4	4	4	5	36.858	33.37	2	0.00087398	29212	160511_QHF_FH_JSI9i_2	97.068	50.697			1.0423	1.0685	24.759	17	3	Median	1.1642	0.98597	15.438	4	0	Median	0.87327	1.0598	8.1662	4	1	Median	1.0699	1.055	11.714	4	1	Median	1.0865	1.1109	43.724	5	1	Median	3456900000	1774000000	1682900000	717640000	331430000	386210000	766830000	436710000	330110000	1166600000	617690000	548900000	805830000	388170000	417650000	24518	1544	23238	153234;153235;153236;153237;153238;153239;153240;153241;153242;153243;153244;153245;153246;153247;153248;153249;153250	207506;207507;207508;207509;207510;207511;207512;207513;207514;207515;207516;207517;207518;207519;207520	207515			15	
IIEVAPQVATQNVNPTPGATS	0	Unmodified	2106.0957	0.095697884	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	3	9			1						2	2	3	3	69.685	68.335	2;3	8.2555E-06	62191	160511_QHF_FH_JSI11i_1	61.767	55.165			1.1072	1.1401	31.67	10	4	Median	1.331	1.0738	58.189	2	1	Median	0.89231	1.0328	12.382	2	0	Median	1.2352	1.21	20.924	3	2	Plateau	1.1638	1.2228	28.395	3	1	Plateau	850080000	408260000	441820000	137610000	56530000	81080000	165420000	94489000	70926000	374640000	180350000	194290000	172410000	76891000	95520000	24519	1691	23239	153251;153252;153253;153254;153255;153256;153257;153258;153259;153260	207521;207522;207523;207524;207525;207526;207527;207528;207529;207530;207531;207532	207522			11	
IIEVEEEQEDPYLNDR	0	Unmodified	1989.9167	0.91673047	1219	P23142	FBLN1	Fibulin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		57.2	56.794	2	4.9789E-17	51271	160511_QHF_FH_JSI10i_1	126.1	96.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24520	1219	23240	153261;153262	207533;207534	207534			2	
IIEVGDTPK	1	Unmodified	970.53351	0.53351176	1960	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.86	4	2				3	1			2	3	3	2	32.396	28.385	2	9.3602E-05	25129	160511_QHF_FH_JSI11i_1	94.302	69.38			0.96956	0.97117	14.071	10	0	Median	1.2674	1.0745	23.382	2	0	Median	0.72459	0.86071	6.8875	3	0	Plateau	1.0404	1.0135	9.4771	3	0	Median	0.83127	0.88874	18.023	2	0	Median	3008500000	1613600000	1394900000	617140000	260320000	356820000	956900000	560520000	396380000	759170000	402150000	357020000	675310000	390640000	284660000	24521	1960	23241	153263;153264;153265;153266;153267;153268;153269;153270;153271;153272	207535;207536;207537;207538;207539;207540;207541;207542;207543;207544;207545	207536			11	
IIEVHVEK	1	Unmodified	965.55458	0.55458155	3794	Q8WW22	DNAJA4	DnaJ homolog subfamily A member 4	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	15	0								3			1	1	1	45.992	35.797	3	0.0052807	18521	160513_QHF_FH_JSI10Kac_5	45.161	1.879			0.85229	0.95618	44.083	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85229	1.0268	NaN	1	0	Median	0.97999	0.95618	NaN	1	0	Median	0.42231	0.46291	NaN	1	0	Median	17338000	10387000	6950900	0	0	0	7445000	4535400	2909700	4145200	1847700	2297400	5747900	4004000	1743800	24522	3794	23242	153273;153274;153275	207546	207546			1	
IIEVNQNQK	1	Unmodified	1084.5877	0.58767259	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			15.674	15.43	2	0.04274	12983	160511_QHF_FH_JSI10i_1	45.68	29.799			1.3966	1.6263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3966	1.6263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38211000	15329000	22882000	0	0	0	38211000	15329000	22882000	0	0	0	0	0	0	24523	261	23243	153276	207547	207547			1	
IIEVSGQK	1	Unmodified	872.49673	0.49673232	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								2	1	1		16.485	15.87	2	0.022919	13344	160511_QHF_FH_JSI9i_2	54.611	14.965			1.1998	1.2219	85.517	4	4	Median	1.1429	0.96705	107.92	2	2	Median	0.59065	0.71983	NaN	1	1	Median	2.8189	2.7346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	575620000	234830000	340790000	149130000	75443000	73690000	62442000	33456000	28986000	364040000	125930000	238110000	0	0	0	24524	1938	23244	153277;153278;153279;153280	207548;207549;207550;207551	207550			4	
IIEVVDAIMTTAQSHQR	0	Unmodified	1910.9884	0.98839604	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	6.08		9	9						7	7	6	6	6	82.474	79.537	2;3	1.3414E-23	72778	160511_QHF_FH_JSI9i_2	158.2	125.6			0.30315	0.30667	252.61	20	20	Median	0.45021	0.36522	251.1	6	6	Median	0.1066	0.12567	293.43	5	5	Median	1.8732	1.777	299.39	4	4	Median	0.3779	0.3944	257	5	5	Median	3525700000	1747200000	1778500000	864280000	416510000	447770000	1073800000	565180000	508650000	853010000	413880000	439130000	734560000	351620000	382950000	24525	2176	23245	153281;153282;153283;153284;153285;153286;153287;153288;153289;153290;153291;153292;153293;153294;153295;153296;153297;153298;153299;153300;153301;153302;153303;153304;153305	207552;207553;207554;207555;207556;207557;207558;207559;207560;207561;207562;207563;207564;207565;207566;207567;207568;207569;207570;207571;207572;207573;207574;207575;207576;207577;207578;207579;207580;207581;207582;207583;207584;207585	207571			34	
IIEVVDAIMTTAQSHQR	0	Oxidation (M)	1926.9833	0.98331066	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	63.089	62.803	3	3.6098E-05	54195	160511_QHF_FH_JSI12i_3	77.468	66.81			0.8194	0.87432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8194	0.87432	NaN	1	0	Median	48162000	28299000	19863000	0	0	0	0	0	0	0	0	0	48162000	28299000	19863000	24526	2176	23245	153306;153307	207586;207587;207588;207589	207589		1824	4	
IIFDDFR	0	Unmodified	924.47052	0.47051757	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	3	2	1	60.759	59.899	2	0.0082581	51817	160511_QHF_FH_JSI11i_2	84.244	32.556			0.91243	1.026	11.141	7	0	Median	1.2311	1.0665	NaN	1	0	Median	0.82466	1.026	5.0965	3	0	Plateau	1.2345	1.2137	8.7383	2	0	Median	0.91243	0.9822	NaN	1	0	Median	1109400000	537780000	571590000	185740000	76812000	108930000	289490000	162080000	127410000	398720000	191790000	206930000	235420000	107110000	128310000	24527	1602	23246	153308;153309;153310;153311;153312;153313;153314	207590;207591;207592;207593;207594;207595;207596;207597;207598	207595			9	
IIFDSSCLR	0	Unmodified	1109.5539	0.55392962	5773				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	3	2	65.69	65.025	2	0.0051068	55742	160511_QHF_FH_JSI12i_2	64.803	34.618	+		1.0647	1.0753	8.5112	7	1	Median	1.3486	1.1136	NaN	1	0	Median	0.79023	0.91412	NaN	1	0	Median	0.95281	0.96312	6.3588	3	0	Plateau	0.94078	1.0214	12.248	2	1	Median	4008400000	1992500000	2015900000	664360000	321170000	343190000	312060000	144090000	167970000	2063000000	1026200000	1036700000	969010000	501010000	468000000	24528	5773	23247	153315;153316;153317;153318;153319;153320;153321	207599;207600	207600			2	
IIFEDDR	0	Unmodified	906.4447	0.44469675	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.52	4	4	1				2	1		3	3	3	3	34.585	31.468	2	0.0017493	18305	160513_QHF_FH_JSI12Kac_4	105.39	67.153			1.0118	1.0238	11.064	12	0	Median	1.1894	0.9771	17.807	3	0	Plateau	0.81197	0.97339	3.7731	3	0	Plateau	1.1523	1.1469	13.165	3	0	Plateau	1.0151	1.1049	7.8273	3	0	Plateau	10342000000	5163400000	5179000000	2221400000	967490000	1253900000	2643100000	1440100000	1203000000	3183400000	1577500000	1605800000	2294500000	1178300000	1116300000	24529	1683	23248	153322;153323;153324;153325;153326;153327;153328;153329;153330;153331;153332;153333	207601;207602;207603;207604;207605;207606;207607;207608;207609;207610;207611;207612;207613;207614	207613			14	
IIFEDDRCLAFHDISPQAPTHFLVIPK	1	Unmodified	3178.6274	0.62737592	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		2	3	2	95.764	94.935	4;5	5.3274E-14	83863	160511_QHF_FH_JSI12i_3	86.131	75.893			0.82168	0.79787	38.646	7	1	Median	NaN	NaN	NaN	0	0	Median	0.76539	0.89274	16.202	2	0	Median	0.74616	0.71247	40.407	3	1	Median	1.1182	1.1527	2.4409	2	0	Median	719380000	377200000	342170000	0	0	0	197450000	90212000	107230000	344060000	202020000	142050000	177870000	84974000	92893000	24530	1683	23249	153334;153335;153336;153337;153338;153339;153340	207615;207616;207617;207618;207619;207620;207621;207622;207623;207624	207621			8	
IIFHSGPTNSGK	1	Unmodified	1256.6513	0.65133548	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	4	2	2	2	21.521	19.343	2;3	8.1469E-06	15672	160511_QHF_FH_JSI12i_3	105.25	94.597			0.76403	0.78164	24.679	10	2	Median	0.82616	0.67281	38.069	4	2	Median	0.73721	0.85804	5.8857	2	0	Median	1.0468	0.97933	5.9319	2	0	Median	0.70191	0.72571	3.1966	2	0	Median	1563000000	837470000	725540000	362830000	182720000	180110000	305720000	167780000	137940000	340120000	154570000	185550000	554350000	332410000	221940000	24531	3466	23250	153341;153342;153343;153344;153345;153346;153347;153348;153349;153350	207625;207626;207627;207628;207629;207630;207631;207632;207633;207634;207635;207636;207637;207638;207639;207640	207639			16	
IIFMASK	1	Unmodified	808.4517	0.45169638	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	2	4	3	2	46.393	42.475	2	0.027473	23361	160513_QHF_FH_JSI10Kac_6	63.306	24.285			0.97321	0.93927	41.622	11	3	Median	0.96199	0.80306	13.839	2	0	Median	0.85333	1.007	63.376	4	2	Median	0.97628	0.90989	38.428	3	1	Plateau	0.87371	0.90897	16.466	2	0	Median	2069300000	968770000	1100500000	242100000	107060000	135040000	591570000	325260000	266310000	670680000	300950000	369720000	564970000	235500000	329480000	24532	5658	23251	153351;153352;153353;153354;153355;153356;153357;153358;153359;153360;153361	207641;207642;207643;207644;207645;207646;207647;207648;207649	207648			9	
IIFSEHLPLSK	1	Unmodified	1282.7285	0.72852317	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	62.87	62.218	3	3.586E-08	55043	160511_QHF_FH_JSI11i_3	106.49	83.266			1.1413	0.99825	48.933	5	0	Median	1.1413	0.95123	NaN	1	0	Median	2.5198	2.8995	NaN	1	0	Median	1.0722	1.0477	24.974	2	0	Median	0.97725	0.99825	NaN	1	0	Median	1161300000	566780000	594520000	63551000	27453000	36098000	177930000	68252000	109680000	520120000	251210000	268900000	399700000	219860000	179840000	24533	5523	23252	153362;153363;153364;153365;153366;153367	207650;207651;207652;207653;207654;207655;207656;207657	207650			8	
IIFVVGGPGSGK	1	Unmodified	1129.6495	0.64954457	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.43	2	4	4			1	2	5	4	5	6	6	5	62.479	56.265	2	5.2633E-13	31779	160513_QHF_FH_JSI11Kac_5	132.01	85.347			0.98343	1.0569	23.671	22	1	Median	1.3961	1.1166	19.452	5	0	Median	0.91588	1.0955	10.379	6	0	Median	0.90763	0.89935	20.641	6	0	Median	0.95275	1	38.666	5	1	Median	5308500000	2593100000	2715400000	894910000	399690000	495220000	1233500000	689670000	543790000	1606000000	794500000	811470000	1574200000	709260000	864910000	24534	776	23253	153368;153369;153370;153371;153372;153373;153374;153375;153376;153377;153378;153379;153380;153381;153382;153383;153384;153385;153386;153387;153388;153389	207658;207659;207660;207661;207662;207663;207664;207665;207666;207667;207668;207669;207670;207671;207672;207673;207674;207675;207676;207677;207678;207679;207680;207681;207682;207683;207684;207685;207686;207687;207688;207689;207690;207691;207692;207693	207679			34	
IIFYSLIK	1	Unmodified	995.60555	0.60555449	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	2	3	81.626	77.522	2	0.002249	38767	160513_QHF_FH_JSI12Kac_6	91.626	91.626			1.0865	1.0764	14.159	9	0	Median	1.159	0.9766	13.757	2	0	Median	0.94226	1.0914	5.4734	2	0	Median	1.1448	1.0745	9.7453	2	0	Median	1.112	0.96468	23.911	3	0	Plateau	1140400000	552400000	588010000	320930000	159520000	161410000	335950000	171700000	164250000	274810000	121550000	153260000	208710000	99620000	109090000	24535	3466	23254	153390;153391;153392;153393;153394;153395;153396;153397;153398	207694;207695;207696;207697;207698;207699;207700;207701;207702;207703;207704	207703			11	
IIFYSLIKPSINEK	2	Unmodified	1663.9549	0.95489429	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			80.578	79.228	3	0.0026825	66398	160511_QHF_FH_JSI10i_3	59.871	48.6			0.4106	0.48342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4106	0.48342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8927100	4925200	4001900	0	0	0	8927100	4925200	4001900	0	0	0	0	0	0	24536	3466	23255	153399	207705;207706	207706			2	
IIGATDSCGDLMFLMK	1	Unmodified	1770.8354	0.83544914	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.772	94.376	2	0.063718	82881	160511_QHF_FH_JSI11i_2	43.084	26.831			0.99328	0.96944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99328	0.96944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13746000	6172400	7573100	0	0	0	0	0	0	13746000	6172400	7573100	0	0	0	24537	1572	23256	153400	207707	207707			1	
IIGATDSSGELMFLMK	1	Unmodified	1711.8525	0.85247941	2367;2123	P83916;Q13185	CBX1;CBX3	Chromobox protein homolog 1;Chromobox protein homolog 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	94.876	94.596	2;3	1.9341E-65	81573	160511_QHF_FH_JSI12i_2	232.2	187.04			0.89343	0.92456	29.832	11	2	Median	0.83579	0.71774	32.236	2	1	Median	0.68345	0.82971	11.407	3	0	Median	1.1893	1.2125	10.033	3	0	Plateau	1.1785	1.3261	48.499	3	1	Plateau	1838200000	929010000	909190000	313670000	160930000	152730000	483710000	286280000	197430000	666090000	283550000	382540000	374730000	198240000	176480000	24538	2123;2367	23257	153401;153402;153403;153404;153405;153406;153407;153408;153409;153410;153411	207708;207709;207710;207711;207712;207713;207714;207715;207716;207717;207718;207719;207720;207721;207722;207723;207724;207725;207726;207727;207728	207711			21	
IIGAVDQIQLTQAQLEER	0	Unmodified	2024.0902	0.090218576	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	4	4	2	76.86	76.222	2;3	1.8135E-105	69482	160511_QHF_FH_JSI11i_1	238.47	176.07			0.91057	0.92554	28.051	12	5	Median	1.0904	0.96685	13.564	3	1	Plateau	0.64451	0.77775	30.823	4	3	Median	1.1344	1.1391	18.407	3	1	Median	1.0644	1.1956	22.958	2	0	Median	1274000000	672690000	601270000	168210000	75707000	92499000	523010000	306230000	216780000	409500000	203560000	205940000	173240000	87189000	86055000	24539	3085	23258	153412;153413;153414;153415;153416;153417;153418;153419;153420;153421;153422;153423;153424	207729;207730;207731;207732;207733;207734;207735;207736;207737;207738;207739;207740;207741;207742;207743;207744;207745;207746;207747	207730			18	
IIGDASTQTDALK	1	Unmodified	1331.6933	0.69325988	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	35.706	35.099	2	0.0099208	31749	160511_QHF_FH_JSI12i_1	48.741	29.961			1.1443	1.0851	10.011	4	0	Median	1.1572	0.94374	NaN	1	0	Median	0.86978	1.03	NaN	1	0	Median	1.1953	1.143	NaN	1	0	Median	1.1316	1.1733	NaN	1	0	Median	249160000	126780000	122380000	61430000	28050000	33380000	61982000	35664000	26318000	72789000	36879000	35910000	52958000	26183000	26775000	24540	3004	23259	153425;153426;153427;153428	207748	207748			1	
IIGDAYLK	1	Unmodified	891.50657	0.50656873	5519	Q9Y2H2	INPP5F	Phosphatidylinositide phosphatase SAC2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	1	1		1							1			1	45.004	43.877	2	0.019092	35906	160511_QHF_FH_JSI9i_3	47.067	1.3491			0.78051	0.72302	25.23	2	0	Median	1.0654	0.86423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57179	0.60488	NaN	1	0	Median	187160000	97757000	89398000	82210000	44788000	37422000	0	0	0	0	0	0	104950000	52969000	51976000	24541	5519	23260	153429;153430	207749;207750	207750			2	
IIGDLLQFQGSHK	1	Unmodified	1454.7882	0.78816332	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	61.878	61.464	3	0.00013905	52748	160511_QHF_FH_JSI12i_3	85.536	77.67			1.7319	2.0015	104.86	5	5	Median	NaN	NaN	NaN	0	0	Median	1.7319	2.0015	NaN	1	1	Median	1.2918	1.1908	133.9	2	2	Median	1.2705	1.2727	155.3	2	2	Median	476070000	207240000	268830000	0	0	0	32514000	10648000	21866000	168310000	69957000	98353000	275250000	126640000	148610000	24542	2588	23261	153431;153432;153433;153434;153435	207751;207752;207753;207754;207755	207754			5	
IIGDTFVK	1	Unmodified	891.50657	0.50656873	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	3	2	3	44.45	43.696	2	0.00821	38358	160511_QHF_FH_JSI9i_2	57.177	12.73			0.80437	0.85864	15.929	9	0	Median	1.1285	0.9335	11.822	2	0	Median	0.78438	0.95348	7.2024	2	0	Median	0.87293	0.8803	8.5044	2	0	Median	0.70052	0.7726	14.81	3	0	Median	2550300000	1265400000	1284900000	377830000	150670000	227160000	589470000	313420000	276050000	807230000	369240000	437990000	775790000	432100000	343700000	24543	1693	23262	153436;153437;153438;153439;153440;153441;153442;153443;153444;153445	207756;207757;207758;207759;207760;207761;207762	207760			7	
IIGGDPK	1	Unmodified	698.39629	0.39629	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	10.336	9.921	2	0.044869	7613	160511_QHF_FH_JSI11i_1	44.973	19.974			0.86101	0.8829	27.239	6	0	Median	0.99286	0.84666	NaN	1	0	Median	0.79371	0.95312	NaN	1	0	Median	1.225	1.2113	44.165	2	0	Median	0.76648	0.82686	8.7222	2	0	Median	1714200000	959640000	754600000	156580000	72012000	84565000	119210000	72694000	46515000	788450000	439420000	349040000	650000000	375510000	274490000	24544	472	23263	153446;153447;153448;153449;153450;153451	207763;207764;207765	207763			3	
IIGHFYASQMAQR	0	Unmodified	1520.7558	0.75581733	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									8	2	2	3	1	49.013	39.757	2;3	4.0182E-41	21851	160513_QHF_FH_JSI10Kac_6	149.93	137.55			0.97908	1.1681	26.361	7	3	Median	1.2314	1.0831	55.828	2	2	Median	0.94265	1.1044	7.9314	2	0	Median	1.0055	0.98592	25.656	2	1	Median	1.1332	1.2233	NaN	1	0	Median	207250000	96236000	111010000	7884000	3433400	4450600	153800000	70651000	83146000	30215000	13761000	16455000	15353000	8391800	6961700	24545	5153	23264	153452;153453;153454;153455;153456;153457;153458;153459	207766;207767;207768;207769;207770;207771;207772;207773	207772			8	
IIGHFYASQMAQR	0	Oxidation (M)	1536.7507	0.75073195	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	37.003	28.098	3	0.00047327	15165	160513_QHF_FH_JSI9Kac_6	66.989	61.835			0.90835	1.0476	9.5816	3	0	Plateau	1.2132	1.0286	NaN	1	0	Median	0.90835	1.0501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81819	0.88121	NaN	1	0	Median	36482000	19119000	17362000	14600000	6224500	8375600	15982000	9674400	6307700	0	0	0	5899400	3220400	2679000	24546	5153	23264	153460;153461;153462	207774;207775;207776	207774		2590	3	
IIGIMEEVADGFK	1	Unmodified	1420.7272	0.72720254	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	84.985	84.653	2;4	5.1834E-06	84959	160511_QHF_FH_JSI9i_2	120.09	90.617			0.96944	1.0477	91.953	6	5	Median	1.6565	1.4315	110.64	2	1	Median	4.5552	5.6212	NaN	1	1	Median	0.79744	0.78236	51.378	2	2	Median	0.85804	0.97565	NaN	1	1	Median	282800000	130570000	152230000	63860000	22655000	41206000	46572000	9238500	37333000	107330000	61198000	46136000	65036000	37476000	27559000	24547	1778	23265	153463;153464;153465;153466;153467;153468	207777;207778;207779;207780;207781;207782;207783;207784	207780			7	
IIGINGDFFANMVVDAVLAIK	1	Unmodified	2219.2024	0.20241156	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.6	1.76				1	1	2	1		2		4	2	1	103.96	95.298	3	6.6421E-08	42145	160513_QHF_FH_JSI10Kac_3	85.231	76.752			0.9233	1.0355	38.956	6	1	Median	NaN	NaN	NaN	0	0	Median	0.98038	1.1357	25.321	3	1	Plateau	0.7308	0.71343	6.3144	2	0	Median	0.86954	0.9441	NaN	1	0	Median	44415000	23369000	21046000	0	0	0	21220000	10559000	10661000	19278000	10516000	8761900	3916200	2293300	1622900	24548	1132	23266	153469;153470;153471;153472;153473;153474;153475	207785;207786;207787;207788;207789;207790;207791;207792	207789			8	
IIGIPSPSSLFK	1	Unmodified	1257.7333	0.7332742	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	93.611	92.935	2	0.012669	77527	160511_QHF_FH_JSI10i_3	45.137	35.183			0.91978	1.0464	54.537	3	1	Median	1.4588	1.2143	NaN	1	0	Median	0.91978	1.0464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.44262	0.44219	NaN	1	1	Median	117270000	80924000	36349000	13244000	4931800	8311900	11781000	7135400	4645800	0	0	0	92248000	68857000	23392000	24549	625	23267	153476;153477;153478	207793;207794;207795;207796;207797;207798	207794			6	
IIGLDQVAGMSETALPGAFK	1	Unmodified	2017.0554	0.055412974	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.75	9	8	4							5	6	6	4	101.02	100.9	2;3	1.3179E-160	88575	160511_QHF_FH_JSI11i_2	376.69	329.96			0.94253	0.94854	18.088	20	5	Median	1.0183	0.87747	14.003	5	2	Median	0.82603	1.0166	9.9352	5	1	Median	0.62709	0.636	27.567	6	2	Linear	0.95201	1.0274	17.183	4	0	Median	11384000000	6059100000	5324600000	1445400000	722950000	722430000	2587200000	1360100000	1227100000	5058900000	2921700000	2137200000	2292300000	1054400000	1237900000	24550	1436	23268	153479;153480;153481;153482;153483;153484;153485;153486;153487;153488;153489;153490;153491;153492;153493;153494;153495;153496;153497;153498;153499	207799;207800;207801;207802;207803;207804;207805;207806;207807;207808;207809;207810;207811;207812;207813;207814;207815;207816;207817;207818;207819;207820;207821;207822;207823;207824;207825;207826;207827;207828;207829;207830;207831	207827			33	
IIGLDQVAGMSETALPGAFK	1	Oxidation (M)	2033.0503	0.050327596	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	3	2	3	89.279	88.666	2;3	7.2999E-10	78048	160511_QHF_FH_JSI9i_2	124.3	111.74			0.98314	0.99499	18.242	10	4	Median	1.1276	0.9525	4.2365	2	0	Median	0.88647	1.1374	31.529	3	2	Median	0.98314	0.98397	3.5115	2	0	Median	0.90635	1.0182	17.793	3	2	Median	213250000	108130000	105120000	40656000	21265000	19391000	50724000	28240000	22484000	56774000	27238000	29536000	65093000	31384000	33709000	24551	1436	23268	153500;153501;153502;153503;153504;153505;153506;153507;153508;153509	207832;207833;207834;207835;207836;207837;207838;207839;207840;207841;207842;207843;207844;207845;207846;207847	207836		1100	16	
IIGLKPEGVPR	1	Unmodified	1177.7183	0.71829284	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	2	2	2	40.999	40.216	2;3	0.00010444	35208	160511_QHF_FH_JSI9i_2	68.069	38.77			1.057	0.96531	9.521	9	0	Median	1.2448	0.9787	11.367	3	0	Median	0.73058	0.87843	2.7516	2	0	Median	1.068	1.0097	2.082	2	0	Median	0.89283	0.90923	2.7753	2	0	Median	5706400000	2847900000	2858500000	1527500000	679920000	847630000	1371000000	751860000	619090000	2027900000	955060000	1072800000	780060000	461090000	318970000	24552	1829	23269	153510;153511;153512;153513;153514;153515;153516;153517;153518	207848;207849;207850;207851;207852;207853;207854;207855;207856;207857;207858;207859;207860;207861;207862;207863	207861			16	
IIGNLLYYR	0	Unmodified	1123.639	0.63897988	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	70.038	64.62	2	3.2954E-24	35602	160513_QHF_FH_JSI10Kac_6	186.43	136.3			1.0469	1.0283	11.339	9	0	Median	1.346	1.14	13.938	3	0	Median	0.83743	0.97676	19.112	2	0	Median	1.1028	1.0367	7.2735	2	0	Median	0.9482	0.97488	7.5405	2	0	Median	6636000000	3215200000	3420800000	1345600000	549130000	796460000	2016100000	1097000000	919080000	1999400000	947270000	1052100000	1274900000	621800000	653130000	24553	1600	23270	153519;153520;153521;153522;153523;153524;153525;153526;153527	207864;207865;207866;207867;207868;207869;207870;207871;207872;207873;207874;207875;207876	207876			13	
IIGNSAFLLILK	1	Unmodified	1300.8119	0.81185887	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	91.325	83.344	2	0.00011509	48239	160513_QHF_FH_JSI10Kac_6	97.472	63.383			0.61208	0.70039	4.0229	3	3	Plateau	0.7779	0.67297	NaN	1	1	Median	0.58623	0.70039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61208	0.64625	NaN	1	1	Median	349480000	197670000	151810000	115290000	60758000	54532000	155860000	94524000	61338000	0	0	0	78331000	42391000	35940000	24554	2755	23271	153528;153529;153530	207877;207878;207879	207879			3	
IIGVDINK	1	Unmodified	870.51747	0.51746776	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	41.662	40.741	2	0.019783	34794	160511_QHF_FH_JSI12i_2	46.426	6.3227			0.77859	0.81251	62.838	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51857	0.52103	NaN	1	1	Median	1.169	1.2671	NaN	1	0	Median	590160000	311550000	278610000	0	0	0	0	0	0	359690000	189530000	170160000	230470000	122020000	108450000	24555	1006	23272	153531;153532	207880;207881;207882	207881			3	
IIGVFKPK	2	Unmodified	900.57967	0.57967409	3707	Q8TCG2	PI4K2B	Phosphatidylinositol 4-kinase type 2-beta	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		34.17	33.448	3	0.0099854	29032	160511_QHF_FH_JSI11i_3	43.808	24.021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24556	3707	23273	153533;153534	207883;207884	207883			2	
IIGVINEHK	1	Unmodified	1021.592	0.59202969	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	24.376	24.029	3	0.0081431	19862	160511_QHF_FH_JSI12i_3	46.819	37.92			2.9363	2.5634	208.53	3	3	Median	2.9363	2.5634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.2687	7.6145	NaN	1	1	Median	0.12964	0.13522	NaN	1	1	Median	99498000	58389000	41109000	12371000	2875100	9496100	0	0	0	27808000	4693700	23114000	59319000	50820000	8498900	24557	3267	23274	153535;153536;153537;153538	207885;207886;207887;207888	207888			4	
IIGVINEHKK	2	Unmodified	1149.687	0.68699271	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			17.412	16.334	3	0.00097997	13334	160511_QHF_FH_JSI10i_3	65.5	43.455			1.2743	1.0276	147.69	4	4	Median	1.2743	1.0276	117.8	2	2	Median	1.0325	1.1652	226.72	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180780000	78642000	102140000	115370000	49798000	65568000	65414000	28843000	36570000	0	0	0	0	0	0	24558	3267	23275	153539;153540;153541;153542	207889;207890;207891;207892	207890			4	
IIGVINEHKK	2	Acetyl (K)	1191.6976	0.69755739	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.111	30.567	3	0.028686	16869	160513_QHF_FH_JSI11Kac_6	38.021	24.621			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3021900	3021900	0	0	0	0	0	0	0	3021900	3021900	0	0	0	0	24559	3267	23275	153543	207893	207893			1	
IIGYGLPFPK	1	Unmodified	1103.6379	0.63791725	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.357	77.537	2	0.024205	67001	160511_QHF_FH_JSI12i_2	41.029	27.987			0.94067	0.98932	9.264	4	0	Median	1.0254	0.86581	NaN	1	0	Median	0.84565	1.0613	NaN	1	0	Median	0.94582	0.9459	NaN	1	0	Median	0.93555	1.0347	NaN	1	0	Median	456320000	230200000	226120000	94147000	43867000	50280000	106050000	56356000	49693000	154930000	79042000	75886000	101190000	50930000	50264000	24560	5269	23276	153544;153545;153546;153547	207894;207895;207896;207897	207894			3	
IIHDFPQFYPLGIVQHD	0	Unmodified	2038.0312	0.031247134	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		5	2						2	2	1	3	3	93.764	91.577	2;3	6.1542E-06	84834	160511_QHF_FH_JSI11i_3	91.932	86.93			1.1208	1.05	10.743	9	1	Median	1.2892	1.124	9.6365	2	0	Median	0.83037	1.0412	NaN	1	0	Median	1.058	1.0311	8.2962	3	1	Median	0.94185	1.0158	14.187	3	0	Plateau	936100000	444630000	491470000	163450000	74029000	89420000	106830000	56984000	49845000	348130000	172640000	175490000	317690000	140980000	176710000	24561	1427	23277	153548;153549;153550;153551;153552;153553;153554;153555;153556	207898;207899;207900;207901;207902;207903;207904;207905;207906;207907;207908;207909;207910;207911;207912	207898			15	
IIHEDGYSEDECK	1	Unmodified	1593.6617	0.66170175	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		17.218	16.944	2	3.9939E-05	13679	160511_QHF_FH_JSI11i_2	79.741	64.768			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24562	915	23278	153557;153558	207913;207914	207913			2	
IIHEDGYSEEECR	0	Unmodified	1635.6835	0.68349983	818	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	73.81	73.46	4	0.040477	63765	160511_QHF_FH_JSI12i_3	27.967	23.903			1.1928	1.1199	15.15	3	1	Median	NaN	NaN	NaN	0	0	Median	0.91025	1.1199	NaN	1	0	Median	1.1928	1.1033	NaN	1	0	Median	1.4397	1.4446	NaN	1	1	Median	138570000	53409000	85166000	0	0	0	34017000	16425000	17592000	44270000	16702000	27567000	60288000	20282000	40006000	24563	818	23279	153559;153560;153561	207915;207916;207917;207918	207918			4	
IIHGAGYSEEDK	1	Unmodified	1317.6201	0.62009493	1330	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	4	2	12.953	12.607	2;3	0.00016616	10389	160511_QHF_FH_JSI10i_2	78.548	71.346			0.64173	0.66717	70.94	8	8	Median	0.91621	0.79814	NaN	1	1	Median	1.1453	1.3819	59.746	2	2	Median	0.48659	0.47361	42.263	3	3	Median	0.81015	0.85542	94.402	2	2	Median	314280000	171640000	142650000	42283000	21164000	21119000	76182000	26469000	49713000	130750000	86134000	44616000	65067000	37869000	27198000	24564	1330	23280	153562;153563;153564;153565;153566;153567;153568;153569;153570	207919;207920;207921;207922;207923;207924;207925;207926;207927	207926			9	
IIHGQDFDQR	0	Unmodified	1227.5996	0.59963426	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			4									3	1	16.609	16.621	2;3	0.0023072	13797	160511_QHF_FH_JSI11i_3	87.639	66.939			1.0881	1.0311	20.987	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1953	1.1285	19.398	3	2	Median	0.86604	0.86442	NaN	1	0	Median	219190000	97481000	121710000	0	0	0	0	0	0	141400000	60182000	81218000	77786000	37299000	40488000	24565	2531	23281	153571;153572;153573;153574	207928;207929;207930	207930			3	
IIHGSESMDSGISLDNSYK	1	Unmodified	2051.947	0.94698474	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	50.235	49.169	3	3.7598E-08	42386	160511_QHF_FH_JSI11i_2	102.57	93.043			0.92618	0.9738	89.113	5	1	Median	0.74131	0.64611	NaN	1	0	Median	0.79715	0.9738	NaN	1	0	Median	0.97772	0.96019	NaN	1	0	Median	2.3012	2.5339	127.36	2	1	Median	259070000	128500000	130580000	45609000	24341000	21268000	54573000	38195000	16378000	65061000	35007000	30054000	93830000	30954000	62876000	24566	1539	23282	153575;153576;153577;153578;153579	207931;207932;207933;207934;207935	207933			5	
IIHGSGYSDEDK	1	Unmodified	1319.5994	0.59935949	1697	P50148	GNAQ	Guanine nucleotide-binding protein G(q) subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.173	10.268	3	0.058955	7579	160511_QHF_FH_JSI12i_3	35.734	26.302			0.66513	0.70311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66513	0.70311	NaN	1	0	Median	58387000	32277000	26110000	0	0	0	0	0	0	0	0	0	58387000	32277000	26110000	24567	1697	23283	153580	207936	207936			0	
IIHGTASYK	1	Unmodified	988.53418	0.53418046	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	2	1	3	10.619	9.547	2;3	4.6089E-05	7126	160511_QHF_FH_JSI12i_3	117.4	64.762			1.6928	1.5841	85.177	9	9	Median	1.0822	0.86485	86	3	3	Plateau	0.79978	0.90967	117.42	2	2	Median	1.6928	1.5841	NaN	1	1	Median	0.40446	0.4047	109.17	3	3	Median	1279600000	641530000	638040000	195810000	98168000	97642000	273080000	152830000	120250000	96459000	37055000	59405000	714230000	353480000	360750000	24568	2521	23284	153581;153582;153583;153584;153585;153586;153587;153588;153589	207937;207938;207939;207940;207941;207942;207943;207944;207945	207943			9	
IIHGTASYKK	2	Unmodified	1116.6291	0.62914348	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	3	2	3	7.889	7.6041	2;3;4	2.0244E-05	5329	160511_QHF_FH_JSI11i_3	73.499	44.773			0.53245	0.55321	46.409	11	6	Median	1.2116	0.98774	26.126	3	1	Median	0.5457	0.64278	8.7853	3	1	Median	0.48134	0.45161	14.019	2	1	Median	0.35507	0.36069	24.072	3	3	Median	1955300000	1033000000	922340000	756540000	283260000	473280000	425930000	269960000	155970000	274990000	168110000	106880000	497850000	311630000	186210000	24569	2521	23285	153590;153591;153592;153593;153594;153595;153596;153597;153598;153599;153600	207946;207947;207948;207949;207950;207951;207952;207953;207954;207955;207956;207957	207946			12	
IIHGTASYKK	2	Acetyl (K)	1158.6397	0.63970816	2521	Q14244	MAP7	Ensconsin	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	21.346	14.197	3	0.00083111	7996	160513_QHF_FH_JSI12Kac_6	93.667	74.424			0.65074	0.74278	15.267	3	1	Plateau	1.0988	0.94348	NaN	1	1	Median	0.60398	0.696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76317	0.82884	NaN	1	0	Median	28864000	13762000	15102000	4052100	527060	3525000	13547000	7106000	6440900	0	0	0	11265000	6128500	5136600	24570	2521	23285	153601;153602;153603	207958;207959	207959	2515		2	
IIHLQEEGASGR	0	Unmodified	1308.6786	0.67861287	3618	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.458	20.459	2	0.0085607	16724	160511_QHF_FH_JSI12i_3	59.067	37.62			0.86549	0.88981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86549	0.88981	NaN	1	1	Median	15187000	9949500	5237800	0	0	0	0	0	0	0	0	0	15187000	9949500	5237800	24571	3618	23286	153604	207960	207960			1	
IIHLVHR	0	Unmodified	886.55011	0.5501053	1801	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			22.024	15.089	3	0.017498	8988	160513_QHF_FH_JSI10Kac_6	44.692	44.692			0.74357	0.85304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74357	0.85304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5260300	3002100	2258200	0	0	0	5260300	3002100	2258200	0	0	0	0	0	0	24572	1801	23287	153605	207961	207961			1	
IIHQAHK	1	Unmodified	845.48717	0.48717069	2816	Q3KRA6	C2orf76	UPF0538 protein C2orf76	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			0.71625	0.27723	3	0.017926	311	160511_QHF_FH_JSI10i_3	36.185	20.032			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24573	2816	23288	153606	207962	207962			1	
IIHSSVQK	1	Unmodified	910.52362	0.52361577	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	2	2	3	6.7207	6.558	2;3	0.00060824	3886	160511_QHF_FH_JSI12i_3	85.064	59.327			0.95664	0.88948	35.89	8	4	Median	1.0769	0.8885	NaN	1	0	Median	0.55261	0.62663	39.932	2	1	Median	1.373	1.3264	5.3766	2	1	Median	0.86414	0.89045	28.53	3	2	Median	2391900000	1088200000	1303700000	45399000	20953000	24446000	192430000	118900000	73531000	779050000	245870000	533170000	1375000000	702450000	672540000	24574	3562	23289	153607;153608;153609;153610;153611;153612;153613;153614	207963;207964;207965;207966;207967	207966			5	
IIHTDIKPENILLSVNEQYIR	1	Unmodified	2507.3748	0.37477328	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	86.382	86.306	3;4	3.1831E-10	74865	160511_QHF_FH_JSI12i_3	110.77	106.97			1.0597	1.0817	11.907	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95723	0.8755	9.8974	2	0	Median	0.9955	1.0104	11.041	2	0	Median	276570000	139440000	137130000	0	0	0	0	0	0	101880000	42115000	59770000	174690000	97329000	77359000	24575	4242	23290	153615;153616;153617;153618	207968;207969;207970;207971;207972;207973;207974;207975	207975			8	
IIHTSVWAGQK	1	Unmodified	1238.6772	0.6771563	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			14						6	5	5	4	6	32.739	29.527	2;3	1.4697E-06	24423	160511_QHF_FH_JSI12i_3	112.84	68.395			1.0896	1.0531	90.546	20	16	Median	1.0645	0.93116	101.28	5	4	Median	1.3671	1.5966	73.778	5	4	Median	0.84161	0.82118	49.976	4	3	Median	0.8465	0.91862	124.47	6	5	Median	4242800000	2077700000	2165100000	925210000	448050000	477160000	591390000	296760000	294630000	1231900000	665410000	566460000	1494300000	667450000	826870000	24576	3101	23291	153619;153620;153621;153622;153623;153624;153625;153626;153627;153628;153629;153630;153631;153632;153633;153634;153635;153636;153637;153638	207976;207977;207978;207979;207980;207981;207982;207983;207984;207985;207986;207987;207988;207989;207990;207991;207992;207993;207994;207995;207996;207997;207998;207999;208000;208001	207993			26	
IIIAEVVNK	1	Unmodified	997.61718	0.61718181	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	53.59	52.623	2	0.00030202	45378	160511_QHF_FH_JSI11i_2	83.265	59.11			1.0941	1.0964	16.842	4	0	Median	1.1028	0.94863	NaN	1	0	Median	1.0855	1.3335	NaN	1	0	Median	0.96949	0.97727	NaN	1	0	Median	1.152	1.2301	NaN	1	0	Median	116850000	51619000	65232000	24637000	10451000	14186000	24935000	11681000	13254000	40603000	18075000	22529000	26676000	11413000	15263000	24577	376	23292	153639;153640;153641;153642	208002;208003;208004	208003			3	
IIIENKPK	2	Unmodified	953.59097	0.59096706	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	15.376	15.414	2;3	0.0098137	12622	160511_QHF_FH_JSI11i_3	39.022	12.638			2.4641	2.3845	74.6	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3352	3.1132	37.71	2	1	Median	1.3669	1.3781	74.976	3	2	Median	1747400000	749140000	998250000	0	0	0	0	0	0	529380000	128620000	400760000	1218000000	620520000	597490000	24578	999	23293	153643;153644;153645;153646;153647	208005;208006;208007;208008;208009;208010;208011	208005			7	
IIIENLFYPVTLEVLHQIFSK	1	Unmodified	2515.409	0.40903352	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	101.7	93.26	3	2.0537E-73	56502	160513_QHF_FH_JSI10Kac_6	204.82	183.62			0.88833	0.85679	19.526	3	0	Plateau	1.109	0.96431	NaN	1	0	Median	0.71157	0.84793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1856	1.2444	NaN	1	0	Median	1128400000	602200000	526180000	350040000	165050000	184990000	723930000	414340000	309590000	2974800	0	2974800	51430000	22812000	28619000	24579	724	23294	153648;153649;153650;153651	208012;208013;208014;208015;208016;208017	208017			6	
IIIHLKSDCK	2	Acetyl (K)	1267.6958	0.69584284	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.825	43.1	3	0.059342	23309	160513_QHF_FH_JSI11Kac_6	31.478	21.791			0.49354	0.48002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49354	0.48002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11720000	6859700	4860500	0	0	0	0	0	0	11720000	6859700	4860500	0	0	0	24580	2328	23295	153652	208018	208018			0	
IIILDEADSMTDGAQQALRR	0	Unmodified	2215.1267	0.12668044	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		78.884	78.365	3	0.00055714	69916	160511_QHF_FH_JSI11i_3	48.112	38.828			1.0543	0.99663	18.297	4	0	Median	1.3217	1.1282	NaN	1	0	Median	0.72217	0.88041	NaN	1	0	Median	1.0543	1.0254	26.243	2	0	Median	NaN	NaN	NaN	0	0	Median	313340000	164520000	148820000	89415000	39798000	49617000	84231000	42249000	41982000	139690000	82474000	57220000	0	0	0	24581	1429	23296	153653;153654;153655;153656	208019;208020;208021;208022	208019			4	
IIIPEIQK	1	Unmodified	952.59572	0.59571809	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	59.552	58.684	2	0.0010531	50846	160511_QHF_FH_JSI11i_2	94.662	23.32			1.0078	0.96132	7.7632	9	0	Median	1.1518	0.95136	3.7635	3	0	Median	0.73979	0.89798	7.3946	2	0	Median	0.99106	0.99051	4.2308	2	0	Median	1.0107	1.0861	0.67979	2	0	Median	3056500000	1558900000	1497600000	538760000	231190000	307570000	742450000	434050000	308390000	1046500000	515350000	531180000	728750000	378280000	350460000	24582	1844	23297	153657;153658;153659;153660;153661;153662;153663;153664;153665	208023;208024;208025;208026;208027;208028;208029;208030;208031;208032;208033;208034;208035;208036;208037;208038;208039;208040;208041;208042;208043;208044;208045;208046	208042			24	
IIIPPFLAYGEK	1	Unmodified	1359.7802	0.78022439	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.92	3	5	4						2	2	4	4	4	99.108	97.571	2;3	4.173E-06	81575	160511_QHF_FH_JSI9i_3	123.88	84.735			1.0281	1.0468	40.236	13	2	Median	1.2112	1.0046	8.2842	2	0	Median	0.84045	1.0222	5.5944	3	1	Median	1.1142	1.092	54.559	4	0	Median	1.1232	1.1823	56.258	4	1	Median	2703800000	1306300000	1397500000	500280000	242750000	257530000	495690000	250480000	245200000	857910000	405710000	452200000	849950000	407400000	442550000	24583	3973	23298	153666;153667;153668;153669;153670;153671;153672;153673;153674;153675;153676;153677;153678;153679	208047;208048;208049;208050;208051;208052;208053;208054;208055;208056;208057;208058;208059;208060;208061;208062;208063;208064;208065;208066;208067;208068;208069;208070;208071;208072	208058			26	
IIIQESALDYR	0	Unmodified	1319.7085	0.70851601	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		2	1	2	1	64.093	59.239	2	0.00010845	51514	160511_QHF_FH_JSI11i_2	85.807	59.365			1.1065	1.2239	27.331	5	1	Median	1.7209	1.4737	NaN	1	1	Median	0.61733	0.72383	NaN	1	0	Median	1.1381	1.1352	15.848	2	0	Median	1.1065	1.2239	NaN	1	0	Median	329460000	148930000	180530000	88622000	30749000	57873000	1667400	922930	744450	137570000	69299000	68273000	101600000	47958000	53640000	24584	3903	23299	153680;153681;153682;153683;153684;153685	208073;208074;208075;208076;208077;208078;208079;208080;208081	208077			9	
IIISDVPSRK	1	Unmodified	1126.671	0.67100829	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			3							1	1	1		31.626	30.698	3	0.0013989	25032	160511_QHF_FH_JSI9i_3	53.567	41.836			1.0173	0.84622	6.2802	3	0	Plateau	1.0173	0.84375	NaN	1	0	Median	0.82065	0.94896	NaN	1	0	Median	0.96296	0.92987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	192490000	109720000	82771000	71726000	42098000	29627000	58529000	36499000	22030000	62240000	31126000	31114000	0	0	0	24585	3816	23300	153686;153687;153688	208082;208083	208083			2	
IIITVVEEQEQK	1	Unmodified	1427.7872	0.78716026	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.915	55.559	2	0.0018815	47608	160511_QHF_FH_JSI12i_2	61.213	45.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24586	2636	23301	153689	208084	208084			1	
IIITWHR	0	Unmodified	937.54977	0.54977095	890	P08069	IGF1R	Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	16	0									4	1	1	1	1	53.209	43.869	3	0.059345	22849	160513_QHF_FH_JSI12Kac_6	38.16	28.644			1.0477	1.0613	9.4809	4	0	Median	1.2194	1.0472	NaN	1	0	Median	0.76309	0.89712	NaN	1	0	Median	1.1049	1.1111	NaN	1	0	Median	0.99347	1.0755	NaN	1	0	Median	148650000	78672000	69983000	23000000	10625000	12375000	67870000	39318000	28553000	36261000	18137000	18124000	21524000	10592000	10931000	24587	890	23302	153690;153691;153692;153693	208085	208085			0	
IIKDGEQHEDLNEVAK	2	Acetyl (K)	1878.9323	0.93232095	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	45.911	35.763	3	0.00088317	20312	160513_QHF_FH_JSI10Kac_4	61.226	50.742			0.74442	0.83701	9.7878	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66743	0.78104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83028	0.89699	NaN	1	0	Median	12603000	6991700	5610900	0	0	0	5405400	2974800	2430600	0	0	0	7197200	4016900	3180300	24588	736	23303	153694;153695	208086;208087	208086	362		2	
IIKPVLTQESATYIAEEYSR	1	Unmodified	2310.2107	0.21072764	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		74.302	73.375	3	5.8238E-25	61408	160511_QHF_FH_JSI10i_3	170.53	166.26			0.83815	0.84244	20.748	4	0	Median	1.0393	0.86404	35.832	2	0	Median	0.72593	0.84892	NaN	1	0	Median	0.89432	0.836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	952260000	484370000	467890000	268400000	126300000	142100000	287510000	148020000	139480000	396350000	210050000	186300000	0	0	0	24589	1254	23304	153696;153697;153698;153699;153700	208088;208089;208090;208091;208092;208093;208094;208095;208096;208097	208090			10	
IILDLISESPIK	1	Unmodified	1339.7963	0.79626839	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.28	5.69	4	9	6					4	2	7	6	6	6	91.37	88.644	2;3	9.4364E-23	81883	160511_QHF_FH_JSI10i_2	202.36	138.88			1.0975	1.0136	32.75	24	4	Median	1.1922	0.95574	53.758	7	1	Median	0.8303	0.98671	12.829	6	1	Median	1.1263	1.0539	12.35	5	0	Median	1.0068	1.09	28.242	6	2	Median	9511400000	4415900000	5095500000	1776700000	695080000	1081600000	2299200000	1133400000	1165800000	2906700000	1420500000	1486200000	2528800000	1166900000	1361900000	24590	1975	23305	153701;153702;153703;153704;153705;153706;153707;153708;153709;153710;153711;153712;153713;153714;153715;153716;153717;153718;153719;153720;153721;153722;153723;153724;153725	208098;208099;208100;208101;208102;208103;208104;208105;208106;208107;208108;208109;208110;208111;208112;208113;208114;208115;208116;208117;208118;208119;208120;208121;208122;208123;208124;208125;208126;208127;208128;208129;208130;208131;208132;208133;208134;208135;208136;208137;208138;208139;208140;208141;208142;208143;208144;208145;208146;208147;208148;208149;208150;208151;208152;208153;208154;208155;208156;208157	208148			60	
IILEAEK	1	Unmodified	814.48002	0.48001963	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	1	2	29.027	28.219	2	0.020108	23735	160511_QHF_FH_JSI12i_2	57.281	18.489			1.3202	1.3057	32.952	5	2	Median	1.2959	1.1069	NaN	1	0	Median	1.665	2.0957	NaN	1	1	Median	1.3202	1.3057	NaN	1	0	Median	1.3772	1.4606	46.334	2	1	Median	580330000	290830000	289510000	154390000	85865000	68523000	95701000	44612000	51089000	135660000	62244000	73414000	194590000	98104000	96482000	24591	2660	23306	153726;153727;153728;153729;153730	208158;208159;208160;208161	208158			4	
IILEHVSTWR	0	Unmodified	1252.6928	0.69280637	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		48.401	48.401	3	0.00075484	42796	160511_QHF_FH_JSI11i_3	50.95	27.574			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24592	5170	23307	153731	208162	208162			1	
IILGGFSQGGALSLYTALTTQQK	1	Unmodified	2366.2846	0.28456129	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		94.832	86.791	3	1.1429E-29	48586	160513_QHF_FH_JSI11Kac_6	156.87	138.56			0.80761	0.76424	16.495	3	0	Median	0.82568	0.70554	NaN	1	0	Median	0.80612	0.96886	NaN	1	0	Median	0.80761	0.76424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	470500000	250150000	220360000	101010000	49014000	51993000	143750000	77737000	66014000	225740000	123390000	102350000	0	0	0	24593	548	23308	153732;153733;153734	208163;208164;208165	208163			3	
IILHNTMESLLER	0	Unmodified	1567.8392	0.83921261	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		68.661	67.775	2;3	9.2105E-05	56904	160511_QHF_FH_JSI10i_3	95.81	58.465			0.89133	0.84159	12.344	5	0	Median	1.013	0.82404	NaN	1	0	Median	0.67883	0.78382	11.582	2	0	Median	0.98242	0.92673	13.63	2	0	Median	NaN	NaN	NaN	0	0	Median	302290000	150090000	152200000	26984000	11524000	15461000	97125000	46098000	51027000	178180000	92469000	85709000	0	0	0	24594	295	23309	153735;153736;153737;153738;153739	208166;208167;208168;208169;208170;208171	208169			5	
IILIHTLAK	1	Unmodified	1020.6696	0.66955173	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	52.915	48.515	3	4.9185E-06	41242	160511_QHF_FH_JSI12i_3	106.6	78.717			0.69412	0.652	33.515	7	2	Median	0.67608	0.56649	11.07	2	1	Median	0.74103	0.86059	10.539	2	0	Median	0.99501	0.94286	57.54	2	1	Median	0.64794	0.652	NaN	1	0	Median	220910000	118080000	102820000	58899000	30222000	28677000	57549000	32619000	24930000	52362000	30429000	21933000	52095000	24812000	27284000	24595	3248	23310	153740;153741;153742;153743;153744;153745;153746;153747	208172;208173;208174;208175;208176;208177;208178;208179;208180;208181	208178			10	
IILLAEGR	0	Unmodified	883.5491	0.54910224	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.61	3	4	4					3	4	4	5	5	4	51.847	47.497	2	1.2616E-06	25258	160513_QHF_FH_JSI9Kac_6	134.06	20.973			1.0206	1.0353	11.582	18	0	Median	1.2482	1.0388	3.6647	4	0	Median	0.89418	1.0601	10.574	5	0	Median	0.96174	0.99719	9.3736	5	0	Median	1.0019	1.0496	19.165	4	0	Median	5689300000	2755100000	2934100000	864850000	363850000	501000000	1206500000	633020000	573450000	2078300000	1001900000	1076400000	1539600000	756350000	783280000	24596	1234	23311	153748;153749;153750;153751;153752;153753;153754;153755;153756;153757;153758;153759;153760;153761;153762;153763;153764;153765	208182;208183;208184;208185;208186;208187;208188;208189;208190;208191;208192;208193;208194;208195;208196;208197;208198;208199;208200;208201;208202;208203;208204;208205;208206;208207	208202			26	
IILLFDAHK	1	Unmodified	1068.6332	0.63316622	4727;4664	Q9H4M9;Q9H223	EHD1;EHD4	EH domain-containing protein 1;EH domain-containing protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.55		6	7						8	4	7	5	5	67.272	63.246	2;3	9.1645E-08	34582	160513_QHF_FH_JSI10Kac_6	133.57	112.7			1.0446	1.0097	48.267	20	11	Median	1.1735	1.0018	42.451	4	2	Median	0.90012	1.0786	58.379	7	6	Median	0.93596	0.93818	63.821	5	2	Median	1.0715	1.1458	21.635	4	1	Median	1541900000	739380000	802520000	230830000	96755000	134070000	409120000	215800000	193320000	525300000	230490000	294820000	376650000	196340000	180310000	24597	4727;4664	23312	153766;153767;153768;153769;153770;153771;153772;153773;153774;153775;153776;153777;153778;153779;153780;153781;153782;153783;153784;153785;153786	208208;208209;208210;208211;208212;208213;208214;208215;208216;208217;208218;208219;208220;208221;208222;208223;208224;208225;208226;208227;208228;208229;208230;208231;208232;208233;208234;208235;208236;208237;208238;208239;208240;208241;208242	208240			35	
IILLKPIIK	2	Unmodified	1049.7576	0.75763846	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	3	2	1	67.573	63.785	3	0.016449	56525	160511_QHF_FH_JSI11i_3	38.086	36.584			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24598	2485	23313	153787;153788;153789;153790;153791;153792;153793;153794	208243;208244;208245;208246;208247;208248;208249;208250	208243			8	
IILNALVAQQK	1	Unmodified	1209.7445	0.74450759	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	60.916	60.302	2	2.2603E-05	53653	160511_QHF_FH_JSI11i_3	101.72	77.953			1.2869	1.1105	12.824	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.76158	0.9201	NaN	1	0	Median	1.1795	1.0901	NaN	1	0	Median	1.1682	1.1902	7.1822	2	0	Median	133670000	56332000	77338000	0	0	0	20573000	10585000	9988100	44099000	16664000	27435000	68997000	29083000	39914000	24599	3855	23314	153795;153796;153797;153798	208251;208252	208251			2	
IILNAVFGFINNPK	1	Unmodified	1558.8871	0.88714908	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	91.861	83.823	2;3	1.2728E-45	46544	160513_QHF_FH_JSI9Kac_6	242.83	205.64			0.72446	0.85249	38.026	9	3	Median	0.58156	0.49226	4.184	2	0	Median	0.71392	0.84948	22.745	3	2	Median	1.224	1.1859	1.8642	2	0	Median	1.0867	1.1379	13.309	2	1	Median	858590000	463720000	394870000	157090000	91568000	65518000	379440000	230510000	148930000	214860000	90394000	124460000	107210000	51249000	55959000	24600	185	23315	153799;153800;153801;153802;153803;153804;153805;153806;153807	208253;208254;208255;208256;208257;208258;208259;208260;208261;208262;208263;208264;208265;208266;208267	208260			15	
IILNAVFGFINNPKPK	2	Unmodified	1784.0349	0.034875949	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			85.696	79.995	3	0.00076331	44859	160513_QHF_FH_JSI10Kac_6	109.83	91.82			0.8736	1.0335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8736	1.0335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62730000	32326000	30404000	0	0	0	62730000	32326000	30404000	0	0	0	0	0	0	24601	185	23316	153808	208268	208268			1	
IILNSHSPAGSAAISQQDFHPK	1	Unmodified	2317.1815	0.1814932	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	49.211	48.271	3;4	1.6502E-13	39547	160511_QHF_FH_JSI9i_3	118.54	103.29			0.93911	0.96181	18.545	7	1	Median	1.2953	1.0438	11.573	2	0	Median	0.8563	0.99595	14.131	2	0	Median	0.84761	0.80265	29.085	2	1	Median	0.79132	0.84572	NaN	1	0	Median	698900000	354670000	344240000	200840000	86396000	114440000	206750000	105720000	101040000	243260000	138770000	104480000	48056000	23780000	24277000	24602	5468	23317	153809;153810;153811;153812;153813;153814;153815	208269;208270;208271;208272;208273;208274;208275;208276;208277;208278;208279;208280;208281	208279			13	
IILNTAVAEFFK	1	Unmodified	1364.7704	0.77038799	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	100.15	100.06	2	4.4831E-05	86429	160511_QHF_FH_JSI12i_3	111.06	92.745			1.0755	1.1171	29.562	5	1	Median	NaN	NaN	NaN	0	0	Median	0.93411	1.1316	NaN	1	0	Median	1.1192	1.1022	1.907	2	0	Median	0.79865	0.83478	50.015	2	1	Median	130310000	70735000	59579000	0	0	0	20792000	11714000	9077300	56046000	28655000	27391000	53476000	30366000	23111000	24603	4802	23318	153816;153817;153818;153819;153820	208282;208283;208284;208285;208286;208287	208287			6	
IILPEGAK	1	Unmodified	839.51165	0.5116541	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	3	3	2	36.94	35.176	2	0.0016632	31889	160511_QHF_FH_JSI12i_1	86.472	37.712			0.95937	1.036	29.715	11	1	Median	1.0855	0.92082	37.776	3	1	Median	0.87263	1.036	11.347	3	0	Median	0.86812	0.8646	26.557	3	0	Median	1.4403	1.5671	17.527	2	0	Median	3199700000	1810700000	1389000000	612730000	323990000	288740000	872850000	552030000	320820000	1052800000	569750000	483040000	661350000	364940000	296410000	24604	816	23319	153821;153822;153823;153824;153825;153826;153827;153828;153829;153830;153831	208288;208289;208290;208291;208292;208293;208294;208295;208296;208297;208298;208299;208300;208301;208302;208303;208304;208305;208306;208307;208308	208296			21	
IILPPEK	1	Unmodified	808.50584	0.50584045	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.479	5	9								5	2	3	4	37.927	36.991	2	0.011748	31950	160511_QHF_FH_JSI11i_2	60.788	51.547			0.97476	0.97447	6.0382	12	6	Median	1.0882	0.91282	3.6158	4	2	Median	0.82847	0.97989	0.3156	2	1	Median	0.99857	0.98512	2.0053	2	1	Median	0.9385	1.0401	6.9434	4	2	Median	1634900000	841620000	793310000	387610000	185560000	202050000	310750000	168510000	142240000	388300000	205750000	182550000	548270000	281810000	266460000	24605	1658	23320	153832;153833;153834;153835;153836;153837;153838;153839;153840;153841;153842;153843;153844;153845	208309;208310;208311;208312;208313;208314;208315;208316;208317;208318;208319;208320;208321;208322;208323;208324;208325;208326;208327;208328;208329;208330;208331;208332;208333;208334;208335;208336;208337;208338	208337			30	
IILSDEGK	1	Unmodified	873.48075	0.48074791	1308;2684	P28347;Q99594;Q15562;Q15561	TEAD1;TEAD3;TEAD2;TEAD4	Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4;Transcriptional enhancer factor TEF-3	no	no	0	0	0	0				By MS/MS	1	0	1												1	24.965	24.426	2	0.028056	21623	160511_QHF_FH_JSI12i_1	42.109	20.407			0.80911	0.81709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80911	0.81709	NaN	1	0	Median	180060000	101700000	78359000	0	0	0	0	0	0	0	0	0	180060000	101700000	78359000	24606	1308;2684	23321	153846	208339	208339			1	
IILSNPPSQGDYHGCPFR	0	Unmodified	2056.9789	0.97889399	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	54.287	53.691	3	8.8201E-05	44715	160511_QHF_FH_JSI10i_3	42.059	37.706			1.0946	1.2579	29.565	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0946	1.2579	NaN	1	0	Median	0.85291	0.80065	NaN	1	0	Median	1.3853	1.3964	NaN	1	0	Median	203930000	91155000	112780000	0	0	0	50322000	26049000	24273000	74143000	39273000	34871000	79465000	25833000	53632000	24607	1670	23322	153847;153848;153849	208340	208340			1	
IILTARPFR	0	Unmodified	1085.6709	0.67094871	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS	By matching			16	0									2	1	1			54.856	45.977	3	0.055293	24455	160513_QHF_FH_JSI9Kac_6	27.772	14.394			1.0328	1.0242	18.271	2	0	Median	1.4057	1.1654	NaN	1	0	Median	0.7588	0.90006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43496000	22755000	20741000	15056000	6609100	8446500	28440000	16146000	12294000	0	0	0	0	0	0	24608	2569	23323	153850;153851	208341	208341			1	
IILVILDAISNIFQAAEK	1	Unmodified	1970.1452	0.14521426	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	3.14			1		1				15	3	5	6	3	104.73	97.108	2;3	1.7218E-190	58547	160513_QHF_FH_JSI10Kac_6	342.36	286.96			0.2929	0.29362	292.02	8	7	Median	0.16701	0.14033	NaN	1	1	Median	0.5137	0.61437	340.26	5	4	Median	NaN	NaN	NaN	0	0	Median	0.89073	0.95309	295.29	2	2	Median	2749400000	1369400000	1380000000	669720000	148610000	521110000	1835300000	1118500000	716740000	152840000	26546000	126300000	91580000	75714000	15867000	24609	1766	23324	153852;153853;153854;153855;153856;153857;153858;153859;153860;153861;153862;153863;153864;153865;153866;153867;153868	208342;208343;208344;208345;208346;208347;208348;208349;208350;208351;208352;208353;208354;208355;208356;208357;208358;208359	208359			18	
IILWDHDLNPER	0	Unmodified	1519.7783	0.77832691	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.96	64.815	3	5.3549E-06	56038	160511_QHF_FH_JSI12i_3	90.793	78.166			0.77147	0.74929	6.7957	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76185	0.71414	NaN	1	0	Median	0.78122	0.78618	NaN	1	0	Median	214100000	121970000	92131000	0	0	0	0	0	0	119480000	72736000	46743000	94625000	49237000	45388000	24610	4848	23325	153869;153870	208360;208361;208362	208362			3	
IILWSEQFYDFFR	0	Unmodified	1762.8719	0.87189295	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				97.347	88.241	2	2.935E-05	50486	160513_QHF_FH_JSI9Kac_6	115.18	104.52			1.1082	0.94547	NaN	1	0	Median	1.1082	0.94547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103330000	44858000	58468000	103330000	44858000	58468000	0	0	0	0	0	0	0	0	0	24611	5561	23326	153871	208363	208363			1	
IIMPPSALDQLSR	0	Unmodified	1439.7806	0.7806351	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	76.86	76.257	2	2.2353E-05	67775	160511_QHF_FH_JSI10i_2	120.68	91.765			1.1824	1.1498	16.109	6	0	Median	1.2279	1.0831	NaN	1	0	Median	0.83495	1.0349	NaN	1	0	Median	1.3852	1.3415	20.593	2	0	Median	1.1596	1.2731	15.634	2	0	Median	531850000	276940000	254910000	100900000	47675000	53226000	111530000	62800000	48729000	203710000	106510000	97198000	115710000	59955000	55753000	24612	3902	23327	153872;153873;153874;153875;153876;153877;153878;153879;153880	208364;208365;208366;208367;208368;208369;208370;208371;208372;208373;208374;208375;208376;208377	208375			14	
IIMTSSASGIYGNFGQANYSAAK	1	Unmodified	2350.1263	0.12634609	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.72	5	9	5						5	4	7	7	6	73.354	70.999	2;3	1.3215E-89	38044	160513_QHF_FH_JSI10Kac_6	217.33	195.34			1.0168	1.0381	13.226	23	2	Median	1.3349	1.1075	14.473	4	0	Median	0.83347	0.96743	12.593	6	0	Median	1.0168	0.9747	8.1169	7	0	Median	1.0604	1.1287	15.356	6	2	Median	2547000000	1263900000	1283100000	430040000	192610000	237440000	632150000	372880000	259270000	882180000	424030000	458160000	602630000	274410000	328220000	24613	1747	23328	153881;153882;153883;153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896;153897;153898;153899;153900;153901;153902;153903;153904	208378;208379;208380;208381;208382;208383;208384;208385;208386;208387;208388;208389;208390;208391;208392;208393;208394;208395;208396;208397;208398;208399;208400;208401;208402;208403;208404;208405;208406;208407;208408;208409;208410;208411;208412;208413;208414;208415;208416;208417;208418;208419;208420;208421;208422;208423;208424;208425;208426;208427	208427			48	
IIMYDQNHLLGR	0	Unmodified	1471.7606	0.76056836	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	55.539	54.739	3	6.5876E-08	48408	160511_QHF_FH_JSI11i_3	120.96	99.659			0.9271	1.2696	18.903	7	1	Linear	1.2476	1.0961	NaN	1	0	Median	0.8208	0.98449	8.7696	2	1	Median	1.1444	1.1082	24.376	2	0	Median	0.93189	0.99712	35.627	2	0	Median	903210000	416160000	487060000	126720000	51517000	75201000	181520000	100170000	81354000	336260000	151990000	184280000	258710000	112480000	146220000	24614	3115	23329	153905;153906;153907;153908;153909;153910;153911	208428;208429;208430;208431;208432;208433	208428			4	
IINADSEDPK	1	Unmodified	1100.535	0.53496832	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	1	3	3	17.1	15.099	2	0.00097947	12791	160511_QHF_FH_JSI10i_1	80.688	52.514			0.90024	0.89045	76.47	9	7	Median	1.1658	0.96576	141.02	2	2	Median	0.2481	0.29771	NaN	1	1	Median	0.90024	0.89045	75.272	3	2	Median	0.93101	0.99845	49.399	3	2	Median	3459600000	2115700000	1343900000	650300000	331250000	319050000	596230000	417770000	178460000	1017600000	591170000	426400000	1195500000	775560000	419980000	24615	1449	23330	153912;153913;153914;153915;153916;153917;153918;153919;153920	208434;208435;208436;208437;208438;208439;208440;208441	208438			8	
IINAFFPEGEDQVNFR	0	Unmodified	1894.9214	0.92136233	4299	Q99653	CHP1	Calcineurin B homologous protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	85.376	84.566	2	0.00040314	74319	160511_QHF_FH_JSI11i_2	99.522	66.916			0.59146	0.6366	39.606	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47624	0.4811	NaN	1	1	Median	0.73455	0.84235	NaN	1	1	Median	105660000	70424000	35240000	0	0	0	0	0	0	70029000	49420000	20609000	35635000	21005000	14631000	24616	4299	23331	153921;153922	208442;208443	208443			2	
IINDLLQSLR	0	Unmodified	1183.6925	0.69247202	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.17	0.373		5	1							1		3	2	74.053	73.284	2	8.0184E-05	63059	160511_QHF_FH_JSI12i_2	114.5	95.721			1.1597	1.1709	124.16	6	6	Median	0.35081	0.30047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9203	2.6747	136.81	3	3	Median	1.2396	1.3862	140.69	2	2	Median	2895500000	1432400000	1463200000	338640000	225260000	113380000	0	0	0	1538500000	766050000	772470000	1018400000	441070000	577300000	24617	3911	23332	153923;153924;153925;153926;153927;153928	208444;208445;208446;208447;208448;208449	208445			6	
IINDYEEFSK	1	Unmodified	1256.5925	0.5924832	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.456	42.797	2	0.0020329	38850	160511_QHF_FH_JSI12i_1	62.303	32.493			1.2655	1.3976	48.016	4	2	Median	1.0704	0.87079	NaN	1	1	Median	1.3255	1.5436	NaN	1	0	Median	2.8497	2.7507	NaN	1	1	Median	1.2082	1.2654	NaN	1	0	Median	276680000	114410000	162270000	35063000	15482000	19581000	87261000	42227000	45033000	77497000	23817000	53680000	76863000	32889000	43974000	24618	2575	23333	153929;153930;153931;153932	208450;208451;208452;208453	208451			4	
IINEPTAAAIAYGLDK	1	Unmodified	1658.8879	0.88793694	985;982;1827;1416	P11021;P11142;P54652;P34931	HSPA5;HSPA8;HSPA2;HSPA1L	78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.21	10	9	9				1	6		9	10	8	8	76.777	74.051	2;3	2.8233E-65	66753	160511_QHF_FH_JSI9i_1	228.8	183.44			0.88425	0.93442	16.98	34	8	Median	1.1692	0.97066	15.825	9	2	Median	0.81862	0.97178	16.244	9	4	Median	0.86509	0.87106	26.291	8	2	Median	0.87249	0.93295	7.6952	8	0	Median	67515000000	31591000000	35924000000	13417000000	5882100000	7535000000	18122000000	9554800000	8567500000	24151000000	10382000000	13770000000	11824000000	5772200000	6052200000	24619	982;985;1827;1416	23334	153933;153934;153935;153936;153937;153938;153939;153940;153941;153942;153943;153944;153945;153946;153947;153948;153949;153950;153951;153952;153953;153954;153955;153956;153957;153958;153959;153960;153961;153962;153963;153964;153965;153966;153967	208454;208455;208456;208457;208458;208459;208460;208461;208462;208463;208464;208465;208466;208467;208468;208469;208470;208471;208472;208473;208474;208475;208476;208477;208478;208479;208480;208481;208482;208483;208484;208485;208486;208487;208488;208489;208490;208491;208492;208493;208494;208495;208496;208497;208498;208499;208500;208501;208502;208503;208504;208505;208506;208507;208508;208509;208510;208511;208512;208513;208514;208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526;208527;208528;208529;208530;208531;208532;208533;208534;208535;208536;208537;208538;208539;208540;208541;208542;208543;208544;208545	208511			92	
IINEPTAAAIAYGLDKR	1	Unmodified	1814.989	0.98904797	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	2	2	2	68.289	67.633	2;3	1.0699E-16	60026	160511_QHF_FH_JSI10i_2	133.93	120.19			1.0517	0.97841	45.56	8	2	Median	1.4074	1.1592	24.547	2	1	Median	0.61541	0.72199	0.17645	2	0	Median	1.307	1.23	49.286	2	1	Median	1.5441	1.6072	69.619	2	0	Median	6603000000	2900200000	3702900000	700090000	348390000	351700000	1376300000	754350000	621970000	1825000000	756220000	1068800000	2701600000	1041200000	1660400000	24620	982	23335	153968;153969;153970;153971;153972;153973;153974;153975;153976	208546;208547;208548;208549;208550;208551;208552;208553;208554;208555;208556;208557;208558;208559;208560;208561;208562;208563	208557			18	
IINEPTAAAIAYGLDR	0	Unmodified	1686.8941	0.89408495	954;1108	P0DMV9;P0DMV8;P17066	HSPA1B;HSPA1A;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.66	5.83	8	9	8				2	8		8	10	9	8	76.908	73.409	2;3	9.2911E-52	67165	160511_QHF_FH_JSI11i_3	214.88	166.94			1.0687	1.0856	20.407	35	11	Median	1.3134	1.0823	16.829	8	2	Median	0.9366	1.1204	29.635	10	3	Median	1.2235	1.2027	17.326	9	4	Median	1.0738	1.1408	14.178	8	2	Median	38312000000	19761000000	18551000000	6378200000	3127900000	3250300000	8626100000	4581200000	4044900000	15745000000	8049700000	7695200000	7563300000	4002500000	3560800000	24621	954;1108	23336	153977;153978;153979;153980;153981;153982;153983;153984;153985;153986;153987;153988;153989;153990;153991;153992;153993;153994;153995;153996;153997;153998;153999;154000;154001;154002;154003;154004;154005;154006;154007;154008;154009;154010;154011	208564;208565;208566;208567;208568;208569;208570;208571;208572;208573;208574;208575;208576;208577;208578;208579;208580;208581;208582;208583;208584;208585;208586;208587;208588;208589;208590;208591;208592;208593;208594;208595;208596;208597;208598;208599;208600;208601;208602;208603;208604;208605;208606;208607;208608;208609;208610;208611;208612;208613;208614;208615;208616;208617	208565			54	
IINEPTAAAIAYGLDRTGK	1	Unmodified	1973.0582	0.058190166	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	70.527	70.101	3	8.6698E-11	62456	160511_QHF_FH_JSI11i_3	127.17	104.96			0.31961	0.35332	104.81	4	3	Median	NaN	NaN	NaN	0	0	Median	0.23365	0.28578	NaN	1	1	Median	0.21074	0.20852	171.1	2	2	Median	0.43718	0.43683	NaN	1	0	Median	318760000	240450000	78310000	0	0	0	44572000	34425000	10146000	116010000	99427000	16582000	158180000	106600000	51581000	24622	954	23337	154012;154013;154014;154015	208618;208619;208620;208621;208622	208618			5	
IINEQTREPLHLGR	0	Unmodified	1674.9166	0.91655173	5777				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.27	4	4						1		2	2	3	2	75.761	73.989	2	0.0071877	66430	160511_QHF_FH_JSI9i_1	98.249	53.112	+		3.8155	3.7106	26.45	9	9	Median	5.0919	4.29	23.348	2	2	Median	3.1184	3.7456	11.395	2	2	Median	3.8341	3.7106	34.846	3	3	Plateau	2.7285	2.9973	1.6876	2	2	Median	2323600000	504630000	1819000000	554980000	88149000	466830000	528740000	143920000	384820000	670810000	151340000	519470000	569070000	121220000	447850000	24623	5777	23338	154016;154017;154018;154019;154020;154021;154022;154023;154024	208623;208624;208625;208626;208627;208628;208629;208630;208631;208632	208628			10	
IINEQTREPLHLGRR	0	Unmodified	1831.0177	0.017662755	5777				yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	67.341	67.193	3	0.0058451	59756	160511_QHF_FH_JSI11i_3	59.607	42.388	+		3.2895	3.2046	40.687	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5489	2.4034	NaN	1	1	Median	4.2452	4.2728	NaN	1	1	Median	114760000	22613000	92144000	0	0	0	0	0	0	59841000	13442000	46398000	54916000	9170400	45746000	24624	5777	23339	154025;154026	208633;208634	208633			2	
IINEVKPTEIYNLGAQSHVK	2	Unmodified	2252.2165	0.21648172	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	1	2	58.279	57.822	3;4	4.6199E-12	49722	160511_QHF_FH_JSI12i_3	139.98	101.98			0.8614	0.81897	31.377	5	1	Median	NaN	NaN	NaN	0	0	Median	0.91148	1.121	0.37229	2	1	Median	0.8614	0.80945	NaN	1	0	Median	0.65182	0.65409	31.79	2	0	Median	1150700000	654590000	496060000	0	0	0	194490000	96455000	98039000	121100000	60771000	60326000	835060000	497370000	337700000	24625	427	23340	154027;154028;154029;154030;154031	208635;208636;208637;208638;208639;208640;208641	208640			7	
IINEVSKPLAHHIPVEK	2	Unmodified	1923.0942	0.094181742	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			42.13	40.589	5	0.00054641	33832	160511_QHF_FH_JSI10i_3	54.768	45.019			1.174	1.1462	5.4479	2	0	Median	1.3438	1.1029	NaN	1	0	Median	1.0257	1.1913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66863000	33672000	33191000	21609000	8577700	13031000	45254000	25095000	20159000	0	0	0	0	0	0	24626	1849	23341	154032;154033	208642	208642			1	
IINFAPSLLR	0	Unmodified	1142.6812	0.68117905	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	80.178	79.473	2	6.7495E-05	68981	160511_QHF_FH_JSI12i_3	107.69	64.779			0.86616	0.92999	7.2651	7	0	Median	1.0899	0.93437	4.8388	2	0	Median	0.8116	0.96873	2.165	2	0	Median	0.92076	0.91549	2.2225	2	0	Median	0.78535	0.79158	NaN	1	0	Median	397330000	205140000	192190000	100900000	43985000	56919000	115330000	68517000	46815000	101660000	46460000	55201000	79437000	46182000	33255000	24627	287	23342	154034;154035;154036;154037;154038;154039;154040	208643;208644;208645;208646;208647;208648;208649;208650;208651;208652	208652			10	
IINHAAGSHGVSGIFMK	1	Unmodified	1737.8985	0.89845882	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			3							1		2		40.124	40.124	3;4	8.1765E-07	35307	160511_QHF_FH_JSI11i_3	115.31	91.831			0.79838	0.74144	16.566	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79838	0.74144	16.566	2	0	Median	NaN	NaN	NaN	0	0	Median	219580000	123620000	95959000	0	0	0	0	0	0	219580000	123620000	95959000	0	0	0	24628	4222	23343	154041;154042;154043	208653;208654;208655;208656	208655			4	
IINLDNESQTTSSSNNEK	1	Unmodified	1992.9236	0.92360676	3682	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			101.97	101.87	2	0.044633	92672	160511_QHF_FH_JSI10i_1	36.284	20.147			1.0633	1.0434	13.441	2	0	Median	1.4122	1.1474	NaN	1	0	Median	0.8006	0.94876	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150190000	87109000	63082000	55431000	24433000	30999000	94760000	62677000	32083000	0	0	0	0	0	0	24629	3682	23344	154044;154045	208657	208657			1	
IINLLGFPGDR	0	Unmodified	1213.6819	0.68190733	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			85.044	83.836	2	0.0097813	70181	160511_QHF_FH_JSI10i_3	48.091	22.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24630	3539	23345	154046	208658	208658			1	
IINNTENLVR	0	Unmodified	1184.6513	0.65133548	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								4	2	2	2	32.744	31.904	2	6.0186E-10	26972	160511_QHF_FH_JSI12i_2	157.86	113.41			0.75798	0.86449	50.858	10	4	Median	0.99888	0.8196	83.607	4	4	Median	0.67551	0.81777	15.737	2	0	Median	1.0511	1.0578	8.1267	2	0	Median	0.67825	0.73056	15.925	2	0	Median	3086300000	1609300000	1476900000	805140000	373060000	432080000	745430000	416870000	328560000	899600000	465350000	434250000	636100000	354050000	282050000	24631	5697	23346	154047;154048;154049;154050;154051;154052;154053;154054;154055;154056	208659;208660;208661;208662;208663;208664;208665;208666;208667;208668;208669;208670;208671;208672;208673	208662			15	
IINPMGLLVEELK	1	Unmodified	1467.8371	0.83708734	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	2	3	102.25	102.14	2;3	2.3746E-12	88034	160511_QHF_FH_JSI12i_2	121.61	87.421			0.95908	0.98583	22.431	7	0	Median	0.97136	0.83248	NaN	1	0	Median	0.6105	0.75339	18.833	2	0	Median	1.1593	1.1778	18.265	2	0	Median	0.92692	1.0274	5.8348	2	0	Median	777340000	398860000	378490000	121030000	61172000	59862000	231000000	138630000	92370000	199490000	103040000	96452000	225820000	96015000	129800000	24632	4811	23347	154057;154058;154059;154060;154061;154062;154063;154064	208674;208675;208676;208677;208678	208675			5	
IINPMGLLVEELKK	2	Unmodified	1595.9321	0.93205036	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	101.57	101.5	3	1.3825E-10	88252	160511_QHF_FH_JSI12i_3	110.77	87.413			0.96469	1.0473	5.3722	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87445	1.0083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0643	1.0879	NaN	1	1	Median	406190000	215470000	190730000	0	0	0	114330000	66509000	47819000	0	0	0	291870000	148960000	142910000	24633	4811	23348	154065;154066;154067;154068	208679;208680;208681;208682	208682			4	
IINTPEVVR	0	Unmodified	1039.6026	0.60259438	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	37.832	36.879	2	0.0033484	31519	160511_QHF_FH_JSI11i_2	73.208	31.633			1.0368	0.98764	12.623	4	0	Median	1.1641	0.97886	NaN	1	0	Median	0.75967	0.94209	NaN	1	0	Median	0.97335	0.99651	NaN	1	0	Median	1.1044	1.246	NaN	1	0	Median	405410000	201950000	203460000	72936000	32653000	40283000	80456000	42542000	37914000	138070000	69963000	68109000	113950000	56787000	57158000	24634	4727	23349	154069;154070;154071;154072	208683	208683			1	
IINYRDDEK	1	Unmodified	1164.5775	0.57750184	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	13.611	13.345	2;3	0.0040761	10869	160511_QHF_FH_JSI9i_2	77.732	36.745			0.9773	0.97651	33.248	7	3	Median	1.1103	0.97651	NaN	1	0	Median	1.064	1.3136	34.138	2	1	Median	0.9773	0.93666	43.461	3	2	Median	0.78787	0.81407	NaN	1	0	Median	782660000	388360000	394310000	32424000	15524000	16901000	140820000	70781000	70037000	464000000	213580000	250420000	145420000	88472000	56950000	24635	3922	23350	154073;154074;154075;154076;154077;154078;154079	208684;208685;208686;208687;208688;208689;208690;208691	208688			8	
IIPAIATTTAAVVGLVCLELYK	1	Unmodified	2315.3174	0.31744132	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.12	5.01		4	2	1					1		3	3	2	103.39	100.7	3	1.4454E-15	91637	160511_QHF_FH_JSI11i_2	128.32	119.16			0.69492	0.81238	53.371	6	0	Median	NaN	NaN	NaN	0	0	Median	0.58288	0.71501	24.728	2	0	Median	0.76956	0.7512	19.981	2	0	Median	1.3148	1.4213	85.778	2	0	Median	130270000	73565000	56700000	0	0	0	16841000	10909000	5931800	97395000	53854000	43542000	16029000	8801600	7227200	24636	1208	23351	154080;154081;154082;154083;154084;154085;154086;154087	208692;208693;208694;208695;208696;208697;208698;208699;208700;208701	208698			10	
IIPAIATTTATVSGLVALEMIK	1	Unmodified	2212.2752	0.27524215	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	103.13	102.97	3	9.6135E-06	88885	160511_QHF_FH_JSI12i_2	65.184	56.126			1.0841	1.1996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0841	1.1996	NaN	1	1	Median	15765000	8040900	7723700	0	0	0	0	0	0	0	0	0	15765000	8040900	7723700	24637	5	23352	154088	208702	208702			1	
IIPAIWFR	0	Unmodified	1014.6015	0.60147217	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	86.926	85.318	2	0.00024987	77620	160511_QHF_FH_JSI11i_3	116.35	64.666			0.95166	0.91777	33.285	5	1	Median	1.0283	0.84866	NaN	1	0	Median	1.1061	1.3189	51.279	2	1	Median	0.95166	0.88888	NaN	1	0	Median	0.94023	0.99202	NaN	1	0	Median	563960000	252780000	311180000	68754000	26768000	41986000	314090000	128870000	185230000	110720000	57181000	53537000	70396000	39961000	30434000	24638	3953	23353	154089;154090;154091;154092;154093	208703;208704;208705;208706;208707;208708;208709;208710;208711	208703			9	
IIPALQSR	0	Unmodified	896.54435	0.54435122	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	38.522	37.736	2	0.0057259	31525	160511_QHF_FH_JSI10i_3	64.757	13.185			0.96557	0.85344	22.699	4	0	Linear	1.7271	1.406	NaN	1	0	Median	0.93151	1.1329	NaN	1	0	Median	1.0009	0.94137	NaN	1	0	Median	0.83332	0.83613	NaN	1	0	Median	482830000	230320000	252510000	47501000	17245000	30256000	80707000	40161000	40546000	161660000	75498000	86158000	192970000	97417000	95554000	24639	1505	23354	154094;154095;154096;154097;154098	208712;208713;208714;208715;208716	208712			5	
IIPFLPGK	1	Unmodified	883.55312	0.55312499	11	A1X283;Q5TCZ1	SH3PXD2B;SH3PXD2A	SH3 and PX domain-containing protein 2B;SH3 and PX domain-containing protein 2A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.67	0.471		2	4							2	2	1	1	72.462	71.466	2	0.014896	59967	160511_QHF_FH_JSI10i_3	50.966	40.093			0.82385	0.97073	49.641	5	3	Median	1.477	1.2154	NaN	1	1	Median	0.58275	0.69779	46.688	2	1	Median	1.0633	1.0158	NaN	1	0	Median	0.35068	0.38861	NaN	1	1	Median	236260000	148590000	87669000	27709000	12209000	15500000	78590000	50114000	28477000	55768000	27929000	27838000	74192000	58338000	15854000	24640	11	23355	154099;154100;154101;154102;154103;154104	208717;208718;208719;208720;208721;208722	208719			6	
IIPGFMCQGGDFTR	0	Oxidation (M)	1613.733	0.73303298	2040	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.55	1	8	8					4	8	6	8	7	8	65.856	62.047	2	7.1598E-07	53299	160511_QHF_FH_JSI12i_2	138.76	125.17			1.0926	1.168	33.279	25	6	Median	1.552	1.2922	14.848	4	1	Median	1.039	1.2539	11.977	6	2	Median	0.90622	0.88532	10.683	7	1	Median	1.3395	1.4053	51.742	8	2	Median	9139800000	4370700000	4769100000	450480000	170420000	280060000	1844700000	911180000	933510000	3134800000	1538700000	1596200000	3709800000	1750500000	1959400000	24641	2040	23356	154105;154106;154107;154108;154109;154110;154111;154112;154113;154114;154115;154116;154117;154118;154119;154120;154121;154122;154123;154124;154125;154126;154127;154128;154129;154130;154131;154132;154133	208723;208724;208725;208726;208727;208728;208729;208730;208731;208732;208733;208734;208735;208736;208737;208738;208739;208740;208741;208742;208743;208744;208745;208746;208747;208748;208749;208750;208751;208752;208753;208754;208755;208756;208757;208758;208759;208760;208761;208762;208763;208764	208726		1705	42	
IIPGFMCQGGDFTR	0	Unmodified	1597.7381	0.73811836	2040	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	5.28	7	11	10					1	5	6	8	10	10	74.951	72.765	2;3	6.6657E-17	38689	160513_QHF_FH_JSI10Kac_6	168.22	158.27			1.1219	1.077	28.192	33	13	Median	1.565	1.3262	29.218	6	2	Median	1.0368	1.1716	22.776	8	2	Median	0.91614	0.87057	29.675	10	5	Median	1.1551	1.2282	21.81	9	4	Median	102700000000	43471000000	59230000000	10558000000	4107200000	6450400000	15960000000	7397100000	8562700000	39304000000	17788000000	21516000000	36880000000	14179000000	22701000000	24642	2040	23356	154134;154135;154136;154137;154138;154139;154140;154141;154142;154143;154144;154145;154146;154147;154148;154149;154150;154151;154152;154153;154154;154155;154156;154157;154158;154159;154160;154161;154162;154163;154164;154165;154166;154167	208765;208766;208767;208768;208769;208770;208771;208772;208773;208774;208775;208776;208777;208778;208779;208780;208781;208782;208783;208784;208785;208786;208787;208788;208789;208790;208791;208792;208793;208794;208795;208796;208797;208798;208799;208800;208801;208802;208803;208804;208805;208806;208807;208808;208809;208810;208811;208812;208813;208814;208815;208816;208817;208818;208819	208818			55	
IIPGGIADR	0	Unmodified	910.52362	0.52361577	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	36.567	35.748	2	0.0041651	31401	160511_QHF_FH_JSI10i_2	57.177	0			1.0373	1.0606	18.564	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79243	0.96709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1389	1.211	18.761	2	0	Median	486890000	240180000	246710000	0	0	0	125570000	69167000	56408000	0	0	0	361310000	171010000	190300000	24643	5010	23357	154168;154169;154170	208820;208821;208822;208823	208822			4	
IIPKPEFPR	1	Unmodified	1095.6441	0.64406526	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		46.36	45.302	3	0.0051813	39914	160511_QHF_FH_JSI11i_3	47.706	41.744			0.92117	0.87003	82.658	3	1	Median	0.50216	0.40257	NaN	1	1	Median	1.8713	2.1002	NaN	1	0	Median	0.92117	0.87003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	836520000	481030000	355490000	423380000	299670000	123700000	132260000	52009000	80248000	280890000	129350000	151540000	0	0	0	24644	3960	23358	154171;154172;154173	208824;208825;208826;208827;208828;208829	208826			6	
IIPLLTDPK	1	Unmodified	1008.6219	0.62193284	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	67.161	66.435	2	0.0024659	58376	160511_QHF_FH_JSI9i_2	64.567	53.694			0.83449	0.87097	5.8749	6	0	Median	0.99059	0.85429	NaN	1	0	Median	0.70479	0.84375	5.8979	2	0	Median	0.94049	0.93726	3.1824	2	0	Median	0.76709	0.86234	NaN	1	0	Median	1212900000	614780000	598170000	182800000	69995000	112800000	322560000	176870000	145690000	450710000	241600000	209110000	256880000	126320000	130560000	24645	862	23359	154174;154175;154176;154177;154178;154179	208830;208831;208832;208833;208834;208835;208836;208837;208838	208833			9	
IIPLVVK	1	Unmodified	780.54731	0.54731133	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							4	4	5	3	57.586	56.763	2	0.014353	49923	160511_QHF_FH_JSI9i_2	66.994	30.407			0.86976	0.90119	73.512	16	16	Median	1.1347	0.96266	73.455	4	4	Median	0.7436	0.87851	73.535	4	4	Median	2.1295	2.0932	92.593	5	5	Median	0.57497	0.58055	76.048	3	3	Median	4512000000	2393900000	2118100000	859930000	422380000	437550000	1055900000	579650000	476290000	1539300000	767510000	771790000	1056800000	624360000	432470000	24646	3343	23360	154180;154181;154182;154183;154184;154185;154186;154187;154188;154189;154190;154191;154192;154193;154194;154195	208839;208840;208841;208842;208843;208844;208845;208846;208847;208848;208849;208850;208851;208852;208853;208854	208849			16	
IIPLYSTLPPQQQQR	0	Unmodified	1780.9836	0.98356866	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								1	5	6	4	67.779	67.104	2;3	1.9303E-16	59530	160511_QHF_FH_JSI10i_2	119.16	72.563			1.0386	1.0821	28.258	12	6	Median	1.2956	1.0907	NaN	1	1	Median	0.90159	1.0737	34.877	3	1	Median	1.0305	1.026	21.005	5	3	Median	1.0466	1.1259	40.798	3	1	Median	411710000	196470000	215240000	22435000	9556400	12879000	116880000	67265000	49611000	177430000	76555000	100880000	94970000	43094000	51876000	24647	300	23361	154196;154197;154198;154199;154200;154201;154202;154203;154204;154205;154206;154207;154208;154209;154210;154211	208855;208856;208857;208858;208859;208860;208861;208862;208863;208864;208865;208866;208867;208868;208869;208870;208871;208872	208872			18	
IIPNFYPPLEGHVR	0	Unmodified	1650.8882	0.88821171	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.48	73.335	3	0.00028724	65269	160511_QHF_FH_JSI11i_3	59.248	48.46			0.68907	0.67279	18.009	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62832	0.59235	NaN	1	1	Median	0.75569	0.76417	NaN	1	1	Median	377640000	227660000	149980000	0	0	0	0	0	0	212500000	129720000	82779000	165140000	97942000	67198000	24648	3028	23362	154212;154213	208873;208874	208873			2	
IIPPGSGIIHQVNLEYLAR	0	Unmodified	2089.1684	0.16840932	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	3	2	87.077	83.729	3	2.9875E-13	40938	160513_QHF_FH_JSI9Kac_6	125.73	96.388			1.0551	0.99991	11.951	11	0	Median	1.21	0.95988	5.0134	3	0	Plateau	0.89826	1.0502	9.3322	3	0	Plateau	1.0685	1.008	19.582	3	0	Median	1.0739	1.1066	15.538	2	0	Median	1758600000	889800000	868780000	576880000	263900000	312980000	604150000	325000000	279140000	329770000	177150000	152620000	247780000	123750000	124030000	24649	1194	23363	154214;154215;154216;154217;154218;154219;154220;154221;154222;154223;154224	208875;208876;208877;208878;208879;208880;208881;208882;208883;208884;208885;208886	208884			12	
IIPQFMCQGGDFTNHNGTGGK	1	Unmodified	2278.0259	0.025920535	5444	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	63.506	62.987	3	1.9942E-14	55937	160511_QHF_FH_JSI11i_3	123.19	116.92			0.7681	0.78226	69.608	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1256	1.2797	NaN	1	1	Median	0.52415	0.47818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127340000	80884000	46460000	0	0	0	23447000	13154000	10294000	71377000	50451000	20926000	32520000	17279000	15241000	24650	5444	23364	154225;154226;154227;154228;154229;154230	208887;208888;208889;208890;208891;208892;208893;208894	208888			8	
IIPQGADSTMLATK	1	Unmodified	1444.7596	0.7595653	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.146	51.474	2	0.00062951	46584	160511_QHF_FH_JSI11i_1	92.112	56.204			1.1336	1.1328	64.843	4	2	Median	2.8924	2.3261	NaN	1	1	Median	0.41889	0.49006	NaN	1	1	Median	0.99888	0.97478	NaN	1	0	Median	1.2866	1.3163	NaN	1	0	Median	247890000	121630000	126260000	41712000	11029000	30683000	57711000	34767000	22944000	83006000	45176000	37831000	65459000	30655000	34804000	24651	1443	23365	154231;154232;154233;154234	208895;208896;208897;208898;208899;208900	208895			6	
IIPTTQPAE	0	Unmodified	968.51786	0.51786169	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	36.018	35.325	2	0.015511	31083	160511_QHF_FH_JSI9i_1	44.117	11.646			1.2304	1.1394	20.083	3	0	Plateau	1.4872	1.2107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2275	1.1394	NaN	1	0	Median	1.5451	1.6565	NaN	1	0	Median	160280000	65431000	94846000	48289000	22113000	26175000	0	0	0	68698000	25686000	43012000	43290000	17632000	25659000	24652	4512	23366	154235;154236;154237	208901;208902	208902			2	
IIPVLLEHGLER	0	Unmodified	1387.8187	0.81873516	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	5	4	73.077	72.494	2;3	6.8751E-06	63842	160511_QHF_FH_JSI9i_2	100.38	87.368			0.5125	0.47991	110.39	13	13	Median	0.92373	0.79129	115.88	2	2	Median	0.62878	0.76131	89.734	2	2	Median	0.5125	0.47991	134.63	5	5	Median	0.7434	0.79546	130.66	4	4	Median	810760000	404850000	405910000	71505000	35788000	35716000	87811000	53892000	33919000	395200000	189870000	205330000	256240000	125300000	130940000	24653	1148	23367	154238;154239;154240;154241;154242;154243;154244;154245;154246;154247;154248;154249;154250	208903;208904;208905;208906;208907;208908;208909;208910;208911;208912;208913;208914;208915;208916;208917;208918;208919;208920;208921	208910			19	
IIPVVVK	1	Unmodified	766.53166	0.53166127	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.963	46.982	2	0.027199	40330	160511_QHF_FH_JSI12i_2	53.71	53.71			1.3472	1.4214	63.014	4	3	Median	3.1268	2.6677	NaN	1	1	Median	0.59652	0.73798	NaN	1	1	Median	2.1985	2.1795	NaN	1	1	Median	0.82554	0.92703	NaN	1	0	Median	312300000	140430000	171870000	49343000	17511000	31831000	66826000	34940000	31886000	101830000	39730000	62097000	94302000	48250000	46053000	24654	4157	23368	154251;154252;154253;154254	208922;208923;208924;208925;208926	208923			5	
IIPYFEALK	1	Unmodified	1092.6219	0.62193284	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	79.811	78.974	2	0.0031048	68258	160511_QHF_FH_JSI12i_2	60.91	36.938			1.0568	1.0545	44.123	3	1	Median	NaN	NaN	NaN	0	0	Median	0.43649	0.52826	NaN	1	1	Median	1.0568	1.0545	NaN	1	0	Median	1.1297	1.2003	NaN	1	0	Median	91048000	47515000	43533000	0	0	0	18514000	11837000	6677200	46170000	21239000	24931000	26364000	14439000	11925000	24655	4974	23369	154255;154256;154257	208927;208928;208929;208930;208931	208928			5	
IIPYLSFGEVEK	1	Unmodified	1393.7493	0.74931819	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	87.178	86.585	2	5.0151E-05	74742	160511_QHF_FH_JSI12i_2	98.943	68.379			1.0251	1.0241	16.136	5	2	Median	1.5933	1.3873	NaN	1	1	Median	0.82278	1.02	NaN	1	0	Median	1.1883	1.1715	19.01	2	1	Median	0.9194	1.0059	NaN	1	0	Median	306220000	150070000	156160000	56815000	23607000	33208000	69671000	34088000	35583000	117730000	63985000	53743000	62009000	28387000	33623000	24656	2947	23370	154258;154259;154260;154261;154262	208932;208933;208934;208935;208936;208937;208938;208939;208940;208941	208933			10	
IIQEFLSK	1	Unmodified	976.55933	0.55933258	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.065	46.552	2	0.012756	39959	160511_QHF_FH_JSI11i_2	61.962	25.567			4.8628	4.9188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8628	4.9188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	232520000	85499000	147020000	0	0	0	0	0	0	232520000	85499000	147020000	0	0	0	24657	1557	23371	154263	208942	208942			1	
IIQEFLSKVK	2	Acetyl (K)	1245.7333	0.7332742	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		77.041	66.406	2	0.00037985	35296	160513_QHF_FH_JSI11Kac_5	90.15	52.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24658	1557	23372	154264;154265	208943;208944	208943	1574		2	
IIQEPPHK	1	Unmodified	960.53927	0.53926584	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				58.912	57.378	2	0.0056024	46946	160511_QHF_FH_JSI9i_3	73.324	4.148			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234460000	234460000	0	234460000	234460000	0	0	0	0	0	0	0	0	0	0	24659	203	23373	154266	208945	208945			1	
IIQEPPHKK	2	Unmodified	1088.6342	0.63422886	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	3	0			6								2	2	2	7.8155	7.6645	2;3	2.3506E-05	5083	160511_QHF_FH_JSI12i_3	105.57	66.025			1.0187	1.161	35.351	6	0	Median	NaN	NaN	NaN	0	0	Median	0.98772	1.161	0.05358	2	0	Median	1.5514	1.4331	28.276	2	0	Median	0.77907	0.78393	41.214	2	0	Median	1477500000	705010000	772530000	0	0	0	293580000	140970000	152610000	448170000	183140000	265030000	735790000	380890000	354890000	24660	203	23374	154267;154268;154269;154270;154271;154272	208946;208947	208947			2	
IIQEVEENPDLR	0	Unmodified	1453.7413	0.7412727	865	P07199	CENPB	Major centromere autoantigen B	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				52.163	50.573	3	0.041857	41427	160511_QHF_FH_JSI9i_3	15.941	2.1316			1.4707	1.1987	NaN	1	0	Median	1.4707	1.1987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62596000	30352000	32245000	62596000	30352000	32245000	0	0	0	0	0	0	0	0	0	24661	865	23375	154273	208948	208948			1	
IIQEVEENPDLRK	1	Unmodified	1581.8362	0.83623572	865	P07199	CENPB	Major centromere autoantigen B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		33.823	33.103	3	0.0016639	28827	160511_QHF_FH_JSI9i_2	59.607	45.577			3.7838	3.3333	NaN	1	1	Median	3.7838	3.3333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37512000	2940400	34571000	16741000	2940400	13801000	0	0	0	20770000	0	20770000	0	0	0	24662	865	23376	154274;154275	208949;208950	208949			2	
IIQFNPGPEK	1	Unmodified	1141.6132	0.61315906	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.79	3	4	3				4	1		3	4	5	3	45.4	41.814	2	8.9844E-11	35793	160511_QHF_FH_JSI11i_2	141.48	83.921			0.98794	0.97555	19.615	14	2	Median	1.1157	0.96094	16.062	3	1	Plateau	0.92009	1.0964	20.366	3	0	Plateau	0.92922	0.93241	10.577	5	0	Median	1.4005	1.4982	23.643	3	1	Plateau	1535200000	711030000	824200000	275930000	127120000	148810000	387570000	186260000	201310000	593590000	272440000	321140000	278140000	125200000	152930000	24663	1596	23377	154276;154277;154278;154279;154280;154281;154282;154283;154284;154285;154286;154287;154288;154289;154290	208951;208952;208953;208954;208955;208956;208957;208958;208959;208960;208961;208962;208963;208964;208965;208966;208967;208968;208969	208962			19	
IIQGQGVDEPLSETGFK	1	Unmodified	1816.9207	0.92069363	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	60.559	59.863	2;3	6.3973E-52	53051	160511_QHF_FH_JSI9i_1	259.48	244.8			0.93113	0.96888	15.674	9	2	Median	1.2073	0.98011	17.359	3	2	Plateau	0.86761	1.0225	7.6156	2	0	Median	1.0756	1.0398	20.646	2	0	Median	0.96183	1.0219	9.0423	2	0	Median	1241100000	610760000	630370000	341210000	141120000	200100000	292380000	158000000	134380000	274100000	130390000	143710000	333440000	181250000	152180000	24664	4915	23378	154291;154292;154293;154294;154295;154296;154297;154298;154299	208970;208971;208972;208973;208974;208975;208976;208977;208978;208979;208980;208981;208982	208979			13	
IIQHCSNYSTQELLR	0	Unmodified	1860.9152	0.9152311	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	5.62		3	7						3	2	3	4	4	42.506	39.531	2;3	5.3999E-11	34639	160511_QHF_FH_JSI11i_3	153.24	147.69			1.191	1.3232	26.112	11	5	Median	2.0474	1.76	25.861	2	2	Median	1.0829	1.2719	5.5996	2	0	Median	1.191	1.1528	25.969	3	0	Median	1.2334	1.322	27.96	4	3	Median	810660000	387930000	422730000	47069000	17770000	29299000	169900000	83985000	85915000	283410000	145620000	137790000	310280000	140560000	169730000	24665	133	23379	154300;154301;154302;154303;154304;154305;154306;154307;154308;154309;154310;154311;154312	208983;208984;208985;208986;208987;208988;208989;208990;208991;208992;208993;208994;208995;208996	208984			14	
IIQHLVPASFR	0	Unmodified	1279.7401	0.74009091	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		50.69	49.425	2;3	0.00050297	41468	160511_QHF_FH_JSI10i_3	58.476	53.719			0.70656	0.6228	18.057	5	2	Median	0.85485	0.69687	15.891	2	1	Median	0.45632	0.54176	19.322	2	1	Median	0.70656	0.66205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	269380000	157700000	111680000	106950000	58731000	48216000	95915000	63999000	31916000	66516000	34972000	31544000	0	0	0	24666	4416	23380	154313;154314;154315;154316;154317	208997;208998;208999;209000;209001	208997			5	
IIQLAVINFLAK	1	Unmodified	1341.8384	0.83840797	3486	Q8IZT6	ASPM	Abnormal spindle-like microcephaly-associated protein	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				94.493	85.552	2	0.00050095	48354	160513_QHF_FH_JSI9Kac_6	89.247	68.377			0.80191	0.68587	NaN	1	1	Median	0.80191	0.68587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30708000	17509000	13200000	30708000	17509000	13200000	0	0	0	0	0	0	0	0	0	24667	3486	23381	154318;154319	209002;209003	209002			2	
IIQLIEGK	1	Unmodified	912.56442	0.56441796	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	47.819	47.028	2	0.0016552	40267	160511_QHF_FH_JSI12i_2	100.19	29.276			0.0873	0.098131	88.323	5	5	Median	0.01889	0.015715	NaN	1	1	Median	0.0873	0.10349	NaN	1	1	Median	0.0434	0.041097	NaN	1	1	Median	0.10781	0.11469	22.055	2	2	Median	314090000	294990000	19093000	68879000	67995000	884040	55671000	54436000	1235000	51148000	49734000	1413300	138390000	122830000	15561000	24668	738	23382	154320;154321;154322;154323;154324	209004;209005;209006;209007;209008	209005			5	
IIQLLDDYPK	1	Unmodified	1216.6703	0.67033959	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.83	8	12	7			1	4	7		8	12	8	11	71.733	67.64	2;3	4.4344E-08	35103	160513_QHF_FH_JSI10Kac_4	120.12	73.693			1.8385	1.9158	146.87	34	32	Median	1.0576	0.89763	152.63	7	6	Median	1.3821	1.6071	160.44	10	9	Median	3.1356	3.1201	170.45	7	7	Median	1.8385	1.9158	133.52	10	10	Median	20805000000	10419000000	10387000000	4214000000	2088600000	2125400000	5693700000	3238300000	2455400000	6372000000	3147800000	3224200000	4525800000	1944200000	2581600000	24669	837	23383	154325;154326;154327;154328;154329;154330;154331;154332;154333;154334;154335;154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347;154348;154349;154350;154351;154352;154353;154354;154355;154356;154357;154358;154359;154360;154361;154362;154363	209009;209010;209011;209012;209013;209014;209015;209016;209017;209018;209019;209020;209021;209022;209023;209024;209025;209026;209027;209028;209029;209030;209031;209032;209033;209034;209035;209036;209037;209038;209039;209040;209041;209042;209043;209044;209045;209046;209047;209048;209049;209050;209051;209052;209053;209054;209055;209056;209057;209058;209059;209060;209061;209062;209063;209064	209025			56	
IIQMLQHFEHLAPVLVAAVSLWATDYGMK	1	Unmodified	3280.7141	0.71408244	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			101.23	94.641	3;4	1.3747E-21	56245	160513_QHF_FH_JSI10Kac_6	157.11	139.46			1.8156	1.9723	58.423	4	4	Median	2.1509	1.8296	NaN	1	1	Median	1.7911	2.1261	69.864	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	883940000	337070000	546870000	122880000	45342000	77536000	761060000	291730000	469330000	0	0	0	0	0	0	24670	2605	23384	154364;154365;154366;154367	209065;209066;209067;209068	209066			4	
IIQMLQHFEHLAPVLVAAVSLWATDYGMK	1	Oxidation (M)	3296.709	0.70899706	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			100.4	94.683	4	0.0015981	55775	160513_QHF_FH_JSI10Kac_6	53.895	43.565			0.56917	0.66741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56917	0.66741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68425000	47128000	21297000	0	0	0	68425000	47128000	21297000	0	0	0	0	0	0	24671	2605	23384	154368	209069	209069		2048	1	
IIQQAGQVWFPDSAFK	1	Unmodified	1833.9414	0.94136949	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	84.171	83.402	2;3	4.9658E-11	74175	160511_QHF_FH_JSI10i_2	103.88	81.406			0.70418	0.70914	92.953	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.089809	0.1109	NaN	1	1	Median	0.70418	0.70914	NaN	1	0	Median	0.29033	0.30993	NaN	1	1	Median	47421000	31629000	15792000	0	0	0	9631700	8443600	1188100	24939000	13115000	11824000	12850000	10070000	2780000	24672	2348	23385	154369;154370;154371;154372	209070;209071;209072;209073	209073			4	
IIQQVLQGLDYLHTK	1	Unmodified	1767.9883	0.98831969	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	2	3	80.134	79.571	3	3.839E-07	70643	160511_QHF_FH_JSI10i_2	126.77	120.33			0.12873	0.12016	283.09	8	8	Median	1.5678	1.336	339.33	2	2	Median	1.4326	1.7703	388.75	2	2	Median	0.095077	0.094807	NaN	1	1	Median	1.6468	1.664	336.02	3	3	Plateau	751540000	411870000	339660000	94750000	44172000	50577000	149990000	65872000	84114000	150940000	138530000	12413000	355860000	163300000	192560000	24673	4242	23386	154373;154374;154375;154376;154377;154378;154379;154380;154381	209074;209075;209076;209077;209078;209079;209080;209081;209082	209079			9	
IIQSFLWYLNPR	0	Unmodified	1548.8453	0.84528426	2444	Q13574	DGKZ	Diacylglycerol kinase zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.283	82.973	2	4.2003E-19	44425	160513_QHF_FH_JSI12Kac_6	155.15	92.328			0.77154	0.90588	18.52	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77154	0.90588	NaN	1	0	Median	0.76731	0.74691	NaN	1	0	Median	1.0057	1.0816	NaN	1	0	Median	165920000	79547000	86378000	25817000	0	25817000	68021000	39848000	28173000	45189000	27668000	17521000	26897000	12030000	14867000	24674	2444	23387	154382;154383;154384;154385	209083;209084;209085;209086;209087;209088	209086			6	
IIQTAQTTPVQTVTIVQQAPLGQHQLPIK	1	Unmodified	3150.7765	0.776483	2166	Q01167	FOXK2	Forkhead box protein K2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	84.05	83.987	3;4	4.9041E-14	72927	160511_QHF_FH_JSI12i_3	82.486	72.339			1.1083	1.0453	5.9753	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1083	1.0453	5.9753	2	1	Median	NaN	NaN	NaN	0	0	Median	90032000	43803000	46229000	0	0	0	0	0	0	80808000	34579000	46229000	9224300	9224300	0	24675	2166	23388	154386;154387;154388	209089;209090;209091	209091			2	
IIQTPGLWESENQNK	1	Unmodified	1755.8792	0.87916317	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.553	3	8	1							2	3	4	3	58.216	57.469	2;3	1.5476E-21	50352	160511_QHF_FH_JSI9i_2	177.76	135.02			0.99544	1.031	53.051	12	2	Median	1.269	1.1007	22.178	2	0	Median	1.0005	1.2282	27.93	3	1	Plateau	0.99127	0.97437	7.3501	4	0	Median	0.99038	1.1122	107.9	3	1	Median	789700000	426660000	363040000	116360000	62059000	54305000	168630000	93419000	75216000	317610000	171930000	145680000	187090000	99256000	87835000	24676	4884	23389	154389;154390;154391;154392;154393;154394;154395;154396;154397;154398;154399;154400	209092;209093;209094;209095;209096;209097;209098;209099;209100;209101;209102	209095			10	
IIQVGNR	0	Unmodified	798.47119	0.47118627	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							2	2	3	1	15.03	14.564	2	0.005487	11984	160511_QHF_FH_JSI9i_2	94.669	25.279			0.87859	0.89587	41.843	8	0	Median	1.5027	1.2386	34.548	2	0	Median	0.75534	0.90806	25.147	2	0	Median	0.83609	0.78893	42.827	3	0	Plateau	1.1948	1.2259	NaN	1	0	Median	1411900000	707930000	703930000	347540000	150540000	197010000	327800000	175620000	152180000	450770000	234930000	215840000	285750000	146850000	138900000	24677	2087	23390	154401;154402;154403;154404;154405;154406;154407;154408	209103;209104;209105;209106;209107;209108;209109	209107			7	
IISAASEGGANVFTVSYFK	1	Unmodified	1959.9942	0.99419293	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.78	2	6	1						5	2	4	4	4	84.561	81.177	2;3	1.8349E-121	40509	160513_QHF_FH_JSI9Kac_6	306.05	268.05			0.92034	1.0105	24.155	14	2	Median	1.3087	1.1084	8.9497	2	0	Median	0.81721	0.98855	19.696	4	0	Median	0.7025	0.7048	18.687	4	0	Linear	0.9967	1.0753	38.937	4	2	Median	663040000	326510000	336530000	73658000	29894000	43764000	179440000	83530000	95908000	217610000	117180000	100420000	192340000	95901000	96437000	24678	1064	23391	154409;154410;154411;154412;154413;154414;154415;154416;154417;154418;154419;154420;154421;154422	209110;209111;209112;209113;209114;209115;209116;209117;209118;209119;209120;209121;209122;209123;209124;209125;209126	209123			15	
IISEGIWSLIR	0	Unmodified	1285.7394	0.73942221	5155	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	91.037	88.74	2	0.045346	43061	160513_QHF_FH_JSI11Kac_6	39.148	21.712			0.91998	0.91054	11.414	5	0	Median	0.99778	0.79013	NaN	1	0	Median	0.91998	1.0338	NaN	1	0	Median	0.93865	0.87723	12.127	2	0	Median	0.89483	0.91054	NaN	1	0	Median	3833700000	1869700000	1964000000	539550000	221230000	318330000	430570000	206170000	224410000	1756500000	915010000	841510000	1107000000	527290000	579750000	24679	5155	23392	154423;154424;154425;154426;154427	209127;209128;209129	209128			3	
IISGHIDLDNR	0	Unmodified	1251.6571	0.65714914	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	34.806	34.742	2;3	0.00090789	29581	160511_QHF_FH_JSI12i_3	46.069	38.345			0.84659	0.81672	27.557	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7018	0.64479	6.7641	2	0	Median	1.0332	1.0301	6.158	2	1	Median	271950000	144230000	127710000	0	0	0	0	0	0	118870000	65179000	53695000	153070000	79055000	74018000	24680	615	23393	154428;154429;154430;154431	209130;209131;209132	209131			3	
IISHFSQDDLTALVQMTEK	1	Unmodified	2175.0882	0.088169665	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	93.499	93.334	3	5.3309E-05	80762	160511_QHF_FH_JSI12i_3	62.966	53.551			1.077	1.124	10.292	4	2	Median	1.4543	1.2618	NaN	1	1	Median	0.9349	1.2038	NaN	1	0	Median	1.0845	1.0217	NaN	1	1	Median	1.0695	1.0496	NaN	1	0	Median	99181000	44655000	54525000	13757000	6658500	7098100	12678000	6198400	6479500	29188000	18068000	11120000	43558000	13730000	29828000	24681	3516	23394	154432;154433;154434;154435;154436	209133;209134;209135;209136;209137;209138	209137			6	
IISHVWENNNPFQIVLVK	1	Unmodified	2149.1684	0.16840932	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	95.453	95.458	3	7.4296E-05	82721	160511_QHF_FH_JSI12i_3	83.418	74.164			1.6597	1.5657	60.657	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6597	1.5657	NaN	1	0	Median	0.89043	0.92563	74.274	2	2	Median	67357000	26277000	41080000	0	0	0	0	0	0	22257000	8002200	14255000	45100000	18275000	26825000	24682	1534	23395	154437;154438;154439	209139;209140;209141	209140			3	
IISIFSGTEK	1	Unmodified	1093.6019	0.60192568	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.67		3						2	1	2	1	2	1	63.621	58.102	2	0.00026217	50086	160511_QHF_FH_JSI11i_2	79.986	58.685			1.1394	1.102	13.12	6	1	Median	1.4373	1.2311	24.005	2	1	Median	0.87619	1.0308	NaN	1	0	Median	1.1448	1.1459	8.1006	2	0	Median	1.0028	1.1223	NaN	1	0	Median	484200000	243110000	241080000	141550000	70184000	71368000	4108100	2155300	1952800	175030000	90670000	84359000	163510000	80106000	83405000	24683	2366	23396	154440;154441;154442;154443;154444;154445	209142;209143;209144;209145	209144			4	
IISIFSGTEKGSK	2	Acetyl (K)	1407.7609	0.76094551	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	1	0	0	1		By MS/MS			15	0								1			1			73.033	62.483	2	0.0053958	31261	160513_QHF_FH_JSI10Kac_5	70.17	7.9078			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1245300	0	1245300	0	0	0	1245300	0	1245300	0	0	0	0	0	0	24684	2366	23397	154446	209146	209146	2437		1	
IISKIENHEGVR	1	Acetyl (K)	1435.7783	0.77832691	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.487								5	8		5	5	3	39.548	30.124	2;3	9.8522E-07	16607	160513_QHF_FH_JSI11Kac_6	125.74	106.65			0.045141	0.051527	328.91	6	6	Median	NaN	NaN	NaN	0	0	Median	0.061268	0.072942	84.421	2	2	Median	0.0070623	0.0066445	512.88	3	3	Plateau	0.059939	0.066122	NaN	1	1	Median	417750000	296630000	121110000	0	0	0	117270000	51976000	65294000	270030000	218280000	51748000	30445000	26372000	4072500	24685	1055	23398	154447;154448;154449;154450;154451;154452;154453;154454;154455;154456;154457;154458;154459	209147;209148;209149;209150;209151;209152;209153;209154;209155;209156;209157;209158;209159;209160	209149	884		14	
IISLDLPVAEVYKK	2	Unmodified	1586.9283	0.92834519	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	83.255	82.891	3	0.00086384	71757	160511_QHF_FH_JSI12i_3	63.709	50.59			0.92329	0.83042	30.602	4	4	Median	0.77167	0.65905	NaN	1	1	Median	0.51081	0.6246	NaN	1	1	Median	1.1047	1.0464	NaN	1	1	Median	1.1084	1.1267	NaN	1	1	Median	157710000	72292000	85422000	29880000	13973000	15907000	35087000	18810000	16277000	41691000	17845000	23846000	51057000	21665000	29393000	24686	2947	23399	154460;154461;154462;154463	209161;209162;209163;209164	209164			4	
IISLETYNLLR	0	Unmodified	1333.7606	0.76055158	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	84.251	83.533	2	0.011148	73700	160511_QHF_FH_JSI9i_2	46.457	31.783			1.1009	1.135	16.624	4	0	Median	1.0939	0.94953	NaN	1	0	Median	0.8756	1.0514	NaN	1	0	Median	1.3739	1.3845	NaN	1	0	Median	1.108	1.2252	NaN	1	0	Median	255040000	113170000	141870000	45458000	20409000	25049000	63332000	37272000	26060000	71778000	27915000	43863000	74470000	27577000	46893000	24687	2636	23400	154464;154465;154466;154467	209165	209165			1	
IISLFSLLSK	1	Unmodified	1119.6903	0.69034675	3245	Q7RTS9	DYM	Dymeclin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	2	2	2	98.921	95.428	2	6.4989E-05	84450	160511_QHF_FH_JSI10i_3	90.15	64.591			1.0984	1.1106	8.6876	7	3	Median	1.2091	0.99598	9.2914	2	0	Median	1.0229	1.1793	7.0469	2	1	Median	1.14	1.0828	3.5895	2	1	Median	1.1139	1.1351	NaN	1	1	Median	901940000	421070000	480870000	225050000	105950000	119090000	228260000	108360000	119900000	207080000	93670000	113410000	241560000	113090000	128470000	24688	3245	23401	154468;154469;154470;154471;154472;154473;154474;154475	209166;209167;209168;209169;209170;209171;209172;209173	209166			8	
IISLSSSVPEAESQPIGK	1	Unmodified	1840.9782	0.97820851	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.387	63.749	2	1.0545E-11	57873	160511_QHF_FH_JSI11i_1	115.14	91.285			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6576300	0	6576300	0	0	0	0	0	0	0	0	0	6576300	0	6576300	24689	478	23402	154476;154477	209174;209175	209174			2	
IISMLNYFLQHLVGPK	1	Oxidation (M)	1888.0281	0.028076011	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.064	83.736	3	1.2835E-11	46575	160513_QHF_FH_JSI9Kac_6	128.71	114.88			0.58233	0.66394	33.861	4	0	Median	0.4537	0.37977	NaN	1	0	Median	0.49084	0.59248	NaN	1	0	Median	0.85545	0.80832	NaN	1	0	Median	0.69086	0.74402	NaN	1	0	Median	850730000	516340000	334390000	198880000	133080000	65796000	283070000	197110000	85968000	222700000	110760000	111940000	146070000	75384000	70685000	24690	2497	23403	154478;154479;154480;154481	209176;209177;209178;209179	209177		1977	4	
IISMLNYFLQHLVGPK	1	Unmodified	1872.0332	0.033161389	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									8	3	3	2		97.738	89.826	2;3	1.0872E-69	50639	160513_QHF_FH_JSI11Kac_6	259.48	215.8			10.92	12.941	367.91	5	4	Median	1.2509	1.0607	518.47	2	2	Median	0.45382	0.53867	449.59	2	1	Median	14.18	13.331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8122500000	3678500000	4444000000	2615700000	1420500000	1195200000	3537600000	2211800000	1325800000	1969200000	46131000	1923100000	0	0	0	24691	2497	23403	154482;154483;154484;154485;154486;154487;154488;154489	209180;209181;209182;209183;209184;209185;209186;209187	209181			8	
IISNASCTTNCLAPLAK	1	Unmodified	1832.9125	0.91245391	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	5.74	11	8	11			7	6	4		10	14	14	9	57.97	53.774	2;3	1.1643E-137	48198	160511_QHF_FH_JSI10i_1	293.47	247.47			0.98657	1.0557	74.06	47	20	Median	0.98029	0.79885	31.851	10	4	Median	0.91765	1.1005	109.25	14	6	Median	0.89345	0.90254	62.384	14	7	Median	1.2351	1.3214	35.044	9	3	Median	20752000000	9303800000	11448000000	2916800000	1380600000	1536200000	6214600000	2455100000	3759500000	6925600000	3578400000	3347300000	4695000000	1889700000	2805300000	24692	812	23404	154490;154491;154492;154493;154494;154495;154496;154497;154498;154499;154500;154501;154502;154503;154504;154505;154506;154507;154508;154509;154510;154511;154512;154513;154514;154515;154516;154517;154518;154519;154520;154521;154522;154523;154524;154525;154526;154527;154528;154529;154530;154531;154532;154533;154534;154535;154536	209188;209189;209190;209191;209192;209193;209194;209195;209196;209197;209198;209199;209200;209201;209202;209203;209204;209205;209206;209207;209208;209209;209210;209211;209212;209213;209214;209215;209216;209217;209218;209219;209220;209221;209222;209223;209224;209225;209226;209227;209228;209229;209230;209231;209232;209233;209234;209235;209236;209237;209238;209239;209240;209241;209242;209243;209244;209245;209246;209247;209248;209249;209250;209251;209252;209253;209254;209255;209256;209257;209258;209259;209260;209261;209262;209263;209264;209265;209266;209267;209268;209269;209270;209271;209272;209273;209274;209275;209276;209277;209278	209228			91	
IISNVPADSLIR	0	Unmodified	1296.7402	0.74015049	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	61.227	58.761	2	3.3126E-05	50946	160511_QHF_FH_JSI11i_2	105.86	62.617			0.93671	0.91479	20.993	6	1	Median	1.0298	0.88505	NaN	1	0	Median	0.67995	0.83535	NaN	1	0	Median	1.2383	1.226	12.486	2	0	Median	0.76453	0.84383	16.093	2	1	Median	719920000	350140000	369780000	121430000	52272000	69156000	114240000	67367000	46876000	307000000	143000000	164010000	177240000	87501000	89743000	24693	5330	23405	154537;154538;154539;154540;154541;154542	209279;209280;209281;209282;209283;209284;209285;209286;209287	209283			9	
IISPTLLAEYAYVLR	0	Unmodified	1720.9764	0.97635802	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		95.842	86.636	3	0.0032916	49109	160513_QHF_FH_JSI11Kac_6	74.475	63.688			0.82834	0.74912	11.98	2	0	Median	0.95689	0.81535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71705	0.68828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70266000	40129000	30136000	40193000	22463000	17730000	0	0	0	30073000	17666000	12407000	0	0	0	24694	5245	23406	154543;154544	209288	209288			0	
IISQVVDPK	1	Unmodified	997.5808	0.5807963	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	no	no	0	0	0	0	By MS/MS				1	0	1									1				74.833	73.928	2	0.020761	65724	160511_QHF_FH_JSI9i_1	50.04	24.303			0.52976	0.43697	NaN	1	1	Median	0.52976	0.43697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54022000	38090000	15932000	54022000	38090000	15932000	0	0	0	0	0	0	0	0	0	24695	3653	23407	154545	209289	209289			1	
IISSDRDLLAVVFYGTEK	1	Unmodified	2025.0783	0.078256906	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		4	8						8	5	5	4	6	95.132	91.991	2;3;4	1.5635E-55	46620	160513_QHF_FH_JSI10Kac_6	228.19	190.16			1.0702	1.0692	25.477	20	3	Median	1.2488	1.0791	10.089	5	2	Median	1.0339	1.205	17.437	5	1	Median	0.89671	0.88443	18.325	4	0	Median	0.86154	0.90592	38.232	6	0	Median	9746300000	4831300000	4915100000	2682400000	1083900000	1598500000	3822600000	1977000000	1845700000	1528200000	766510000	761660000	1713100000	1003900000	709180000	24696	1023	23408	154546;154547;154548;154549;154550;154551;154552;154553;154554;154555;154556;154557;154558;154559;154560;154561;154562;154563;154564;154565	209290;209291;209292;209293;209294;209295;209296;209297;209298;209299;209300;209301;209302;209303;209304;209305;209306;209307;209308;209309;209310;209311;209312;209313;209314;209315;209316;209317;209318;209319;209320;209321;209322;209323;209324;209325;209326;209327;209328;209329;209330;209331;209332	209331			41	
IISSIEQK	1	Unmodified	916.52295	0.52294707	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.89	5	6	6			2	3			5	6	6	5	22.491	19.664	2	0.00017492	5736	160513_QHF_FH_JSI9Kac_3	119.29	60.31			0.48143	0.48345	122.51	22	20	Median	1.239	1.0459	157.43	5	4	Median	0.2603	0.31232	141.68	6	6	Median	0.72357	0.70708	102.32	6	5	Median	0.4875	0.49619	120.02	5	5	Median	27900000000	14418000000	13483000000	5171100000	2359100000	2812000000	8250100000	4420700000	3829400000	9404000000	4503500000	4900500000	5075200000	3134500000	1940700000	24697	1990	23409	154566;154567;154568;154569;154570;154571;154572;154573;154574;154575;154576;154577;154578;154579;154580;154581;154582;154583;154584;154585;154586;154587	209333;209334;209335;209336;209337;209338;209339;209340;209341;209342;209343;209344;209345;209346;209347;209348;209349;209350;209351;209352;209353;209354;209355	209344			23	
IISSIEQKEENK	2	Unmodified	1416.746	0.74602373	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		12	8							2	4	8	6	18.914	18.505	2;3	2.5646E-06	15021	160511_QHF_FH_JSI12i_3	187.42	150.07			0.13515	0.14771	238.04	14	14	Median	1.4032	1.2102	362.75	2	2	Median	0.10872	0.13487	252.99	3	3	Median	0.15571	0.16177	232.86	5	5	Median	0.81101	0.90389	288.57	4	4	Median	2588500000	1176100000	1412400000	250050000	110580000	139470000	541680000	280050000	261630000	843910000	324070000	519840000	952870000	461360000	491510000	24698	1990	23410	154588;154589;154590;154591;154592;154593;154594;154595;154596;154597;154598;154599;154600;154601;154602;154603;154604;154605;154606;154607	209356;209357;209358;209359;209360;209361;209362;209363;209364;209365;209366;209367;209368;209369;209370;209371;209372;209373;209374;209375	209375			20	
IISSLSSAFHVFEDGNK	1	Unmodified	1849.921	0.92102798	358	O43683	BUB1	Mitotic checkpoint serine/threonine-protein kinase BUB1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	83.044	82.317	3	0.00022886	71435	160511_QHF_FH_JSI12i_3	70.802	54.496			0.44665	0.46798	21.176	2	2	Median	NaN	NaN	NaN	0	0	Median	0.46467	0.54357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42934	0.4029	NaN	1	1	Median	41274000	30827000	10447000	0	0	0	9771600	6527400	3244200	0	0	0	31502000	24299000	7203000	24699	358	23411	154608;154609	209376;209377	209377			2	
IISTEPLPGRK	1	Unmodified	1209.7081	0.70812208	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		28.435	27.595	3	0.00042258	22462	160511_QHF_FH_JSI9i_3	61.363	44.83			0.96773	1.0804	26.229	6	0	Median	1.1357	0.95191	29.37	2	0	Median	0.90439	1.0804	7.9501	2	0	Median	0.92749	0.90386	46.658	2	0	Median	NaN	NaN	NaN	0	0	Median	450880000	217970000	232910000	127360000	55698000	71657000	154920000	77918000	77004000	168600000	84352000	84249000	0	0	0	24700	2831	23412	154610;154611;154612;154613;154614;154615	209378;209379;209380;209381;209382;209383;209384	209383			7	
IISVTPVKNIDPVK	2	Acetyl (K)	1563.9236	0.92359416	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							3				2		1	79.104	68.562	2	0.0015895	36250	160513_QHF_FH_JSI10Kac_4	87.298	60.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4776200	4776200	0	0	0	0	2523500	2523500	0	0	0	0	2252800	2252800	0	24701	2789	23413	154616;154617;154618	209385;209386;209387	209385	2685		3	
IISYAQGFMLLR	0	Unmodified	1410.7693	0.76934213	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	2	3	4	88.101	82.805	2;3	2.6374E-39	42512	160513_QHF_FH_JSI9Kac_6	190.88	158.56			1.0354	1.0568	30.664	10	3	Median	1.3799	1.222	NaN	1	0	Median	0.88998	1.0686	18.868	2	1	Median	1.3903	1.3355	35.54	3	0	Median	0.83002	0.87271	19.471	4	2	Median	9402600000	4843300000	4559200000	2565000000	1145600000	1419400000	2261700000	1351800000	909840000	2818500000	1378400000	1440100000	1757400000	967530000	789840000	24702	1764	23414	154619;154620;154621;154622;154623;154624;154625;154626;154627;154628;154629	209388;209389;209390;209391;209392;209393;209394;209395;209396;209397;209398;209399;209400;209401;209402;209403	209394			16	
IISYAQGFMLLR	0	Oxidation (M)	1426.7643	0.76425675	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	82.171	77.252	2	3.7456E-12	39798	160513_QHF_FH_JSI9Kac_6	122.94	104.88			0.96708	0.9804	23.621	7	0	Median	1.3445	1.1279	NaN	1	0	Median	0.73019	0.84088	21.71	2	0	Median	0.99306	0.92455	41.089	2	0	Median	1.0523	1.0896	15.361	2	0	Median	2545300000	1187600000	1357700000	915300000	331080000	584220000	804710000	478940000	325770000	416030000	189650000	226380000	409310000	187950000	221360000	24703	1764	23414	154630;154631;154632;154633;154634;154635;154636	209404;209405;209406;209407;209408;209409;209410;209411;209412	209406		1437	9	
IISYTVVFR	0	Unmodified	1096.6281	0.62808085	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		74.105	67.595	2	0.0086049	36748	160513_QHF_FH_JSI10Kac_6	71.877	48.835			0.4311	0.51687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4311	0.51687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	308370000	231690000	76686000	0	0	0	308370000	231690000	76686000	0	0	0	0	0	0	24704	971	23415	154637;154638	209413;209414	209414			2	
IITADPKK	2	Unmodified	884.53312	0.53311783	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	10.197	10.26	2;3	0.012737	7535	160511_QHF_FH_JSI12i_3	53.166	22.448			1.3144	1.3586	9.487	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2613	1.1386	NaN	1	0	Median	1.3144	1.3378	2.5882	2	1	Median	257460000	121560000	135900000	0	0	0	0	0	0	40224000	17158000	23066000	217240000	104400000	112830000	24705	4047	23416	154639;154640;154641	209415;209416;209417	209416			3	
IITAESGKPLK	2	Unmodified	1155.6863	0.68632401	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	19.839	19.852	3	0.0044007	16103	160511_QHF_FH_JSI12i_3	53.569	37.939			1.9613	2.0018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9613	2.0018	NaN	1	1	Median	187740000	81979000	105760000	0	0	0	0	0	0	0	0	0	187740000	81979000	105760000	24706	1746	23417	154642	209418	209418			1	
IITDVIGNPEEERR	0	Unmodified	1639.8529	0.85294842	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	44.692	44.073	3	7.451E-05	37596	160511_QHF_FH_JSI12i_3	81.185	67.506			1.0196	0.99263	15.539	6	2	Median	1.1845	1.0008	NaN	1	0	Median	0.81528	1.0012	24.887	2	2	Median	0.90998	0.88125	15.666	2	0	Median	1.0724	1.0867	NaN	1	0	Median	732750000	383580000	349170000	52840000	28259000	24580000	262870000	146540000	116330000	247550000	128490000	119060000	169490000	80292000	89199000	24707	3908	23418	154643;154644;154645;154646;154647;154648	209419;209420;209421;209422;209423;209424;209425;209426	209426			8	
IITEGASILR	0	Unmodified	1071.6288	0.62880913	2264	Q08209	PPP3CA	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			48.684	47.676	2	0.022206	41669	160511_QHF_FH_JSI9i_2	41.448	6.1529			0.88339	0.90163	8.93	2	0	Median	1.0036	0.84646	NaN	1	0	Median	0.7776	0.9604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194630000	108840000	85788000	93763000	53420000	40343000	100870000	55421000	45445000	0	0	0	0	0	0	24708	2264	23419	154649;154650	209427	209427			1	
IITEGFEAAK	1	Unmodified	1077.5706	0.57062555	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.18	4	4	2				3			3	4	3	3	41.269	38.159	2	1.6316E-05	31244	160511_QHF_FH_JSI9i_3	99.442	24.332			1.0561	1.0388	16.972	13	1	Median	1.112	0.95491	6.3256	3	0	Plateau	0.94542	1.1422	29.616	4	1	Median	1.0116	0.97647	12.168	3	0	Median	1.0808	1.1716	10.066	3	0	Plateau	8372600000	4068800000	4303900000	1552500000	689290000	863260000	2260300000	1126800000	1133400000	2457100000	1183900000	1273200000	2102700000	1068800000	1033900000	24709	1494	23420	154651;154652;154653;154654;154655;154656;154657;154658;154659;154660;154661;154662;154663	209428;209429;209430;209431;209432;209433;209434;209435;209436;209437;209438;209439;209440;209441;209442;209443;209444;209445;209446;209447;209448;209449;209450;209451;209452;209453;209454;209455;209456	209444			29	
IITFTKNNQFQALLQYADPVSAQHAK	2	Acetyl (K)	2987.5505	0.55050581	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		93.062	83.69	3	2.6353E-61	47129	160513_QHF_FH_JSI11Kac_6	235.23	210.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56150000	56150000	0	0	0	0	0	0	0	56150000	56150000	0	0	0	0	24710	1281	23421	154664	209457	209457	1195		1	
IITGGAAAQDGR	0	Unmodified	1128.5887	0.58873523	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		13.598	13.413	2	0.021621	11069	160511_QHF_FH_JSI10i_1	49.3	32.07			0.89759	0.97508	0.77175	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7971	0.96977	NaN	1	1	Median	1.0108	0.98041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147200000	77885000	69312000	0	0	0	66331000	34676000	31655000	80866000	43209000	37657000	0	0	0	24711	2330	23422	154665;154666	209458;209459	209459			2	
IITGGAPELAVEGNGPVESNAVLTK	1	Unmodified	2435.2908	0.29076888	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.122	75.639	3	4.0246E-11	67140	160511_QHF_FH_JSI9i_1	88.504	83.504			0.8459	0.8568	14.611	4	2	Median	1.0849	0.87219	NaN	1	0	Median	0.81772	0.98041	NaN	1	0	Median	0.87505	0.84168	NaN	1	1	Median	0.66032	0.68993	NaN	1	1	Median	208040000	108130000	99910000	40854000	18906000	21948000	64474000	33185000	31290000	51894000	25620000	26275000	50821000	30423000	20398000	24712	2338	23423	154667;154668;154669;154670	209460;209461;209462;209463	209463			4	
IITGGDLDAIIVDLLEHVDK	1	Unmodified	2148.1678	0.16780019	5809				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.57		8	3						6	4	3	4	6	101.1	97.955	3	0.012519	91122	160511_QHF_FH_JSI10i_2	30.416	20.885	+		0.98016	1.0534	16.54	17	1	Median	1.3052	1.1213	20.222	4	1	Median	0.98016	1.2046	1.8713	3	0	Plateau	0.90953	0.9237	7.5844	4	0	Linear	1.2216	1.2752	20.883	6	0	Linear	3400300000	1676800000	1723500000	496350000	215820000	280520000	542760000	276350000	266410000	812600000	421040000	391560000	1548600000	763570000	784990000	24713	5809	23424	154671;154672;154673;154674;154675;154676;154677;154678;154679;154680;154681;154682;154683;154684;154685;154686;154687	209464;209465;209466;209467;209468;209469;209470;209471;209472;209473;209474;209475;209476;209477;209478	209473			15	
IITHPNFNGNTLDNDIMLIK	1	Oxidation (M)	2298.1678	0.16781697	47	CON__P00761			yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	2	2	2	3	79.184	76.636	3	1.7899E-11	67871	160511_QHF_FH_JSI12i_3	133.09	109.76		+	0.97523	0.99646	21.849	9	0	Median	0.91911	0.78966	1.8619	2	0	Median	1.1495	1.363	20.735	2	0	Median	1.0056	0.99923	0.39317	2	0	Median	0.98805	1.0115	9.047	3	0	Plateau	1868800000	872420000	996390000	202300000	104940000	97354000	281250000	139120000	142120000	667560000	302490000	365080000	717700000	325860000	391840000	24714	47	23425	154688;154689;154690;154691;154692;154693;154694;154695;154696	209479;209480;209481;209482;209483;209484;209485;209486;209487;209488;209489;209490;209491;209492;209493;209494;209495;209496;209497	209494		14	19	
IITHPNFNGNTLDNDIMLIK	1	Unmodified	2282.1729	0.17290235	47	CON__P00761			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.96	2.71		14	10						1	5	4	8	8	84.263	83.356	2;3;4	3.1689E-83	74564	160511_QHF_FH_JSI10i_2	196.99	180.87		+	0.89854	0.90919	32.192	24	7	Median	0.70321	0.60306	20.453	5	3	Median	0.98533	1.1571	21.782	4	0	Median	0.9503	0.89687	16.651	7	2	Median	1.0043	1.0538	21.755	8	2	Median	15233000000	7861600000	7371800000	1690300000	1011000000	679240000	1309600000	664030000	645530000	6695200000	3668700000	3026600000	5538400000	2517900000	3020500000	24715	47	23425	154697;154698;154699;154700;154701;154702;154703;154704;154705;154706;154707;154708;154709;154710;154711;154712;154713;154714;154715;154716;154717;154718;154719;154720;154721	209498;209499;209500;209501;209502;209503;209504;209505;209506;209507;209508;209509;209510;209511;209512;209513;209514;209515;209516;209517;209518;209519;209520;209521;209522;209523;209524;209525;209526;209527;209528;209529;209530;209531;209532;209533;209534;209535;209536;209537;209538;209539;209540;209541;209542;209543;209544;209545;209546	209532			49	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	1	Unmodified	3308.7187	0.71871013	47	CON__P00761			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.11		2	7						2	5	3	1	2	96.773	95.005	4	5.9031E-208	43176	160513_QHF_FH_JSI9Kac_6	288.7	262.28		+	0.56492	0.47131	40.72	11	5	Median	0.57446	0.47131	41.788	5	2	Median	0.34147	0.39438	47.793	3	2	Median	0.76499	0.70838	NaN	1	0	Median	0.43955	0.45812	30.933	2	1	Median	2235200000	1249600000	985610000	1137300000	652450000	484890000	527000000	271420000	255580000	337310000	155370000	181940000	233560000	170350000	63208000	24716	47	23426	154722;154723;154724;154725;154726;154727;154728;154729;154730;154731;154732	209547;209548;209549;209550;209551;209552;209553;209554;209555;209556;209557;209558;209559;209560;209561;209562	209560			16	
IITHPNFNGNTLDNDIMLIKLSSPATLNSR	1	Oxidation (M)	3324.7136	0.71362475	47	CON__P00761			yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			3							2	1			94.488	93.498	4	1.0864E-32	77934	160511_QHF_FH_JSI10i_3	139.81	130.74		+	0.63655	0.58658	23.872	3	0	Median	0.63164	0.51734	17.765	2	0	Median	0.63655	0.73531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	266570000	155230000	111340000	195680000	114240000	81436000	70890000	40983000	29907000	0	0	0	0	0	0	24717	47	23426	154733;154734;154735	209563;209564;209565	209563		14	3	
IITITGTQDQIQNAQYLLQNSVK	1	Unmodified	2588.381	0.38098087	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.71	11	8	3							4	5	6	7	99.131	98.985	2;3;4	6.3021E-164	86750	160511_QHF_FH_JSI11i_2	371.39	346.83			0.93211	0.99186	27.861	20	3	Median	0.93216	0.802	4.7593	3	0	Median	0.80114	0.99822	22.436	5	0	Median	0.85692	0.80824	44.196	5	1	Median	1.0021	1.0857	17.84	7	2	Median	3953500000	2147600000	1805800000	723920000	364690000	359230000	1161200000	697630000	463550000	1168600000	638130000	530500000	899760000	447200000	452560000	24718	1975	23427	154736;154737;154738;154739;154740;154741;154742;154743;154744;154745;154746;154747;154748;154749;154750;154751;154752;154753;154754;154755;154756;154757	209566;209567;209568;209569;209570;209571;209572;209573;209574;209575;209576;209577;209578;209579;209580;209581;209582;209583;209584;209585;209586;209587;209588;209589;209590;209591;209592;209593;209594;209595;209596;209597;209598;209599;209600;209601;209602;209603;209604;209605;209606;209607;209608;209609;209610;209611;209612;209613;209614;209615;209616;209617	209611			52	
IITLAGPTNAIFK	1	Unmodified	1357.7969	0.79693709	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	6.37	4	7	5					4	4	5	7	6	6	81.694	77.563	2;3	6.2184E-32	72133	160511_QHF_FH_JSI11i_3	197.06	151.9			1.1369	1.1241	16.352	20	0	Median	1.3987	1.1093	20.349	5	0	Median	0.93624	1.1391	13.753	5	0	Median	1.142	1.1025	16.588	5	0	Median	1.1319	1.1712	19.131	5	0	Median	14062000000	6506700000	7555000000	2369300000	1105400000	1263900000	2393300000	1276000000	1117300000	5403000000	2436200000	2966800000	3896200000	1689200000	2207000000	24719	2657	23428	154758;154759;154760;154761;154762;154763;154764;154765;154766;154767;154768;154769;154770;154771;154772;154773;154774;154775;154776;154777;154778;154779;154780;154781	209618;209619;209620;209621;209622;209623;209624;209625;209626;209627;209628;209629;209630;209631;209632;209633;209634;209635;209636;209637;209638;209639;209640;209641;209642;209643;209644;209645;209646;209647;209648;209649;209650;209651;209652;209653;209654;209655;209656;209657;209658;209659;209660;209661;209662;209663;209664;209665;209666;209667;209668;209669;209670;209671	209620			53	
IITLEEGDIILTGTPK	1	Unmodified	1711.9608	0.96076753	3108	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	1	3	88.327	87.797	2;3	2.4057E-05	79671	160511_QHF_FH_JSI10i_1	94.532	76.168			0.82044	0.87028	22.183	6	3	Median	NaN	NaN	NaN	0	0	Median	0.71012	0.82001	1.7289	2	1	Median	0.99691	0.96902	NaN	1	1	Median	0.92058	0.91241	33.701	3	1	Median	77147000	41364000	35783000	0	0	0	38815000	19308000	19507000	9047500	5619800	3427700	29285000	16436000	12848000	24720	3108	23429	154782;154783;154784;154785;154786;154787	209672;209673;209674;209675;209676;209677	209676			6	
IITLTGPTNAIFK	1	Unmodified	1387.8075	0.80750177	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.54	4	7	4					5	4	6	5	6	7	81.469	77.744	2;3	7.9198E-41	67641	160511_QHF_FH_JSI10i_3	202.05	121.61			1.0557	1.0222	24.349	22	4	Median	1.0851	0.91775	12.286	5	0	Median	0.90711	1.0853	16.501	5	0	Median	1.1407	1.0903	24.237	5	2	Median	1.0643	1.1201	31.069	7	2	Median	17908000000	8288700000	9619700000	2610200000	1239600000	1370600000	3529900000	1751700000	1778200000	6405000000	2985500000	3419500000	5363300000	2311900000	3051500000	24721	2656	23430	154788;154789;154790;154791;154792;154793;154794;154795;154796;154797;154798;154799;154800;154801;154802;154803;154804;154805;154806;154807;154808;154809;154810;154811	209678;209679;209680;209681;209682;209683;209684;209685;209686;209687;209688;209689;209690;209691;209692;209693;209694;209695;209696;209697;209698;209699;209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713;209714;209715;209716;209717;209718;209719;209720;209721;209722;209723;209724;209725;209726;209727;209728	209692			51	
IITPLNK	1	Unmodified	797.50109	0.50108942	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	34.437	33.77	2	0.015518	29442	160511_QHF_FH_JSI9i_2	64.523	12.224			0.82804	0.86366	46.225	8	2	Median	0.88976	0.75616	NaN	1	0	Median	0.7131	0.85997	8.0713	2	0	Median	0.31752	0.32216	83.169	3	2	Plateau	0.91716	0.96357	22.947	2	0	Median	1528100000	1011200000	516900000	248750000	135150000	113600000	297900000	193080000	104820000	710570000	501660000	208920000	270910000	181340000	89568000	24722	558	23431	154812;154813;154814;154815;154816;154817;154818;154819	209729;209730;209731;209732;209733	209730			5	
IITTTNLHPVK	1	Unmodified	1235.7238	0.72377215	3402	Q8IV38	ANKMY2	Ankyrin repeat and MYND domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.718	30.718	3	0.025511	26582	160511_QHF_FH_JSI11i_3	33.968	21.471			5.3474	4.9966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.3474	4.9966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110670000	18005000	92664000	0	0	0	0	0	0	110670000	18005000	92664000	0	0	0	24723	3402	23432	154820	209734	209734			1	
IITVPVFHLFHK	1	Unmodified	1449.8496	0.84964136	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	4	3	5	4	84.179	80.091	3;4	6.2722E-06	40577	160513_QHF_FH_JSI11Kac_6	91.937	77.061			0.97022	0.97916	20.924	16	2	Median	1.1525	0.95205	12.594	4	0	Median	0.93916	1.0942	5.7584	3	0	Median	0.99257	0.96765	32.941	5	2	Median	0.91238	0.96314	19.011	4	0	Median	690850000	340330000	350520000	209310000	94024000	115290000	178430000	91830000	86602000	202010000	103090000	98918000	101100000	51383000	49714000	24724	4936	23433	154821;154822;154823;154824;154825;154826;154827;154828;154829;154830;154831;154832;154833;154834;154835;154836	209735;209736;209737;209738;209739;209740;209741;209742;209743;209744;209745;209746;209747;209748;209749;209750;209751;209752;209753;209754;209755;209756;209757;209758;209759;209760;209761;209762;209763;209764;209765;209766;209767;209768;209769;209770	209748			34	
IITVSMEDVK	1	Unmodified	1133.6002	0.60021112	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	1	2	53.698	52.749	2	0.00089476	43146	160511_QHF_FH_JSI9i_3	81.95	49.058			0.82039	0.79786	14.745	8	4	Median	0.84331	0.69198	19.881	3	2	Plateau	0.72458	0.85697	18.463	2	1	Median	0.72741	0.70662	NaN	1	0	Median	0.79909	0.87037	3.9454	2	1	Median	1629500000	809350000	820160000	365680000	165750000	199930000	450580000	206180000	244410000	292340000	157090000	135250000	520910000	280330000	240570000	24725	2282	23434	154837;154838;154839;154840;154841;154842;154843;154844	209771;209772;209773;209774;209775;209776;209777;209778	209775			8	
IITVSMEDVK	1	Oxidation (M)	1149.5951	0.59512574	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		5.33	6.13	2						1			1	1	1		37.259	33.417	2	0.020605	29472	160511_QHF_FH_JSI9i_1	43.635	34.722			0.71441	0.70764	16.077	3	1	Median	0.71441	0.59645	NaN	1	0	Median	0.60196	0.70764	NaN	1	0	Median	0.84641	0.82248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172610000	89337000	83277000	79216000	37902000	41314000	5679800	3596800	2083000	87718000	47837000	39880000	0	0	0	24726	2282	23434	154845;154846;154847	209779;209780;209781	209781		1878	3	
IITYDLIK	1	Unmodified	977.57973	0.57973367	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1.67	0.471	2	4								1	2	2	1	61.383	60.638	2	0.030482	53240	160511_QHF_FH_JSI9i_2	41.575	18.146			1.067	1.1584	10.213	6	0	Median	1.3077	1.1129	NaN	1	0	Median	0.96071	1.154	7.5422	2	0	Median	1.2119	1.2018	20.306	2	0	Median	1.0865	1.2058	NaN	1	0	Median	1048000000	461410000	586550000	168910000	79942000	88972000	283730000	151570000	132160000	388960000	136480000	252480000	206360000	93425000	112930000	24727	228	23435	154848;154849;154850;154851;154852;154853	209782;209783	209783			2	
IITYKDPDNPEYLEFLK	2	Unmodified	2097.067	0.067023518	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	81.005	80.779	3	0.0009256	70131	160511_QHF_FH_JSI12i_3	54.368	40.328			1.1833	1.1408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1833	1.1408	NaN	1	0	Median	44671000	24294000	20376000	0	0	0	0	0	0	0	0	0	44671000	24294000	20376000	24728	1088	23436	154854	209784	209784			1	
IIVACIETLRK	1	Unmodified	1314.7693	0.76934213	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			61.799	53.435	3	0.041673	29452	160513_QHF_FH_JSI10Kac_6	30.336	12.2			1.0211	1.2126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.2126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10583000	5935500	4647900	0	0	0	10583000	5935500	4647900	0	0	0	0	0	0	24729	2485	23437	154855	209785	209785			1	
IIVDELK	1	Unmodified	828.49567	0.49566969	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.66	4	4	2				3	1		3	3	4	4	44.678	41.069	2	0.0046967	36519	160511_QHF_FH_JSI9i_1	97.602	30.567			0.9727	1.0099	19.916	14	1	Median	1.5732	1.2959	24.939	3	0	Median	0.85564	1.0261	14.114	3	0	Median	1.0415	1.0364	10.727	4	0	Median	0.87885	0.95789	23.603	4	1	Median	15187000000	6981100000	8206100000	2846000000	993020000	1853000000	3738000000	1766000000	1972000000	4865100000	2338000000	2527100000	3738100000	1884100000	1854000000	24730	2061	23438	154856;154857;154858;154859;154860;154861;154862;154863;154864;154865;154866;154867;154868;154869	209786;209787;209788;209789;209790;209791;209792;209793;209794;209795;209796;209797;209798;209799;209800;209801;209802;209803;209804;209805;209806;209807;209808	209799			23	
IIVDELKQEVISTSSK	2	Unmodified	1787.988	0.98804492	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	65.124	64.203	3	0.01924	55404	160511_QHF_FH_JSI12i_3	37.431	27.643			0.34822	0.31172	NaN	1	1	Median	0.34822	0.31172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48134000	34642000	13493000	48134000	34642000	13493000	0	0	0	0	0	0	0	0	0	24731	2061	23439	154870;154871	209809;209810	209810			2	
IIVDTYGGWGAHGGGAFSGK	1	Unmodified	1948.9432	0.94316041	1370	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			12						4	4	3	4	5	65.278	62.111	2;3	4.9165E-33	53292	160511_QHF_FH_JSI12i_3	221.91	186.69			0.90117	0.92242	5.5397	13	2	Median	1.1351	0.96763	10.552	2	0	Median	0.80467	0.93058	4.4325	3	0	Median	0.97159	0.94952	3.3967	3	0	Median	0.87964	0.90234	6.4318	5	2	Median	6607900000	3503200000	3104700000	392140000	173660000	218470000	1173600000	648000000	525640000	2404700000	1380700000	1024000000	2637400000	1300800000	1336600000	24732	1370	23440	154872;154873;154874;154875;154876;154877;154878;154879;154880;154881;154882;154883;154884;154885;154886;154887	209811;209812;209813;209814;209815;209816;209817;209818;209819;209820;209821;209822;209823;209824;209825;209826;209827;209828;209829;209830;209831;209832;209833;209834;209835;209836;209837;209838;209839;209840;209841;209842	209830			32	
IIVEGGGAVAALQAMK	1	Unmodified	1526.849	0.84904901	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0			By matching	By MS/MS	2.75	0.433		1	3									1	3	76.766	76.322	2;3	2.7452E-10	66315	160511_QHF_FH_JSI12i_3	147.72	120.6			1.076	1.0941	13.91	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0449	0.99272	NaN	1	0	Median	1.108	1.0577	15.588	3	0	Plateau	97280000	47603000	49677000	0	0	0	0	0	0	29452000	14905000	14547000	67827000	32698000	35129000	24733	3079	23441	154888;154889;154890;154891	209843;209844;209845;209846	209845			3	
IIVEKPFGR	1	Acetyl (K)	1099.639	0.63897988	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.2	0.661							1	4	3	1	3	2	2	69.065	59.106	2	0.011954	31937	160513_QHF_FH_JSI11Kac_6	60.59	29.516			0.17884	1.0531	101.93	8	1	Linear	1.1234	0.97089	NaN	1	0	Median	1.0076	1.1929	3.4954	3	0	Median	0.41729	0.40916	7.0785	2	0	Median	2.2754	2.4709	199.39	2	1	Median	224520000	138710000	85812000	10818000	4971600	5846400	49106000	25693000	23413000	135190000	94480000	40711000	29406000	13563000	15842000	24734	1000	23442	154892;154893;154894;154895;154896;154897;154898;154899	209847;209848;209849;209850;209851;209852;209853;209854	209847	795		8	
IIVENLFYPVTLDVLHQIFSK	1	Unmodified	2487.3777	0.37773339	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.65	6.75		4	4						9	4	4	5	4	102.14	97.581	2;3	2.1086E-60	55678	160513_QHF_FH_JSI10Kac_6	252.17	228.24			0.96459	0.98134	12.982	17	6	Median	1.3125	1.1345	15.861	4	2	Median	0.77308	0.84173	6.4228	4	0	Linear	1.0917	1.0498	10.515	5	2	Median	0.86469	0.91083	8.0232	4	2	Median	24955000000	12193000000	12762000000	5253600000	2138000000	3115600000	5374800000	3012600000	2362200000	11132000000	5356200000	5776100000	3194000000	1686200000	1507800000	24735	1281	23443	154900;154901;154902;154903;154904;154905;154906;154907;154908;154909;154910;154911;154912;154913;154914;154915;154916	209855;209856;209857;209858;209859;209860;209861;209862;209863;209864;209865;209866;209867;209868;209869;209870;209871;209872;209873;209874;209875;209876;209877;209878;209879;209880;209881;209882;209883	209882			29	
IIVENLFYPVTLDVLHQIFSKFGTVLK	2	Unmodified	3132.7627	0.76273042	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			102.23	94.774	4	9.2167E-11	56952	160513_QHF_FH_JSI10Kac_6	121.25	110.24			1.0734	1.0918	3.6347	2	1	Median	1.2106	1.0641	NaN	1	0	Median	0.9517	1.1202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198190000	80540000	117650000	79049000	36552000	42497000	119140000	43988000	75149000	0	0	0	0	0	0	24736	1281	23444	154917;154918	209884;209885	209885			2	
IIVLGLLPR	0	Unmodified	992.67464	0.67463711	2077	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	87.395	83.202	2	1.5723E-16	42372	160513_QHF_FH_JSI11Kac_6	167.25	106.47			0.87496	0.93313	10.559	14	0	Median	1.3095	1.0939	11.552	4	0	Median	0.82822	0.97555	4.7886	4	0	Median	0.91237	0.93016	9.1967	3	0	Median	0.86699	0.90704	1.1391	3	0	Plateau	8686900000	4518700000	4168200000	2132200000	928150000	1204000000	2974200000	1676600000	1297600000	2188500000	1138100000	1050400000	1392000000	775840000	616210000	24737	2077	23445	154919;154920;154921;154922;154923;154924;154925;154926;154927;154928;154929;154930;154931;154932	209886;209887;209888;209889;209890;209891;209892;209893;209894;209895;209896;209897;209898;209899;209900;209901;209902;209903;209904;209905;209906;209907;209908;209909;209910;209911;209912;209913;209914;209915;209916;209917	209897			32	
IIVPHNVSK	1	Unmodified	1005.5971	0.59711507	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	23.386	22.961	3	0.00020439	18875	160511_QHF_FH_JSI12i_3	72.638	45.011			0.69502	0.70873	22.143	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97126	1.0949	NaN	1	0	Median	0.886	0.81973	NaN	1	0	Median	0.69478	0.70873	NaN	1	0	Median	532370000	253310000	279050000	0	0	0	130430000	67185000	63248000	155840000	72517000	83318000	246100000	113610000	132490000	24738	4069	23446	154933;154934;154935	209918;209919;209920	209920			3	
IIVSDHVEFPVR	0	Unmodified	1409.7667	0.76669959	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	60.512	59.942	3	1.4478E-05	51650	160511_QHF_FH_JSI12i_2	95.018	82.636			0.96735	0.97378	32.029	6	3	Median	0.63455	0.55085	NaN	1	0	Median	0.63532	0.75839	NaN	1	0	Median	1.0303	0.97378	8.4705	2	2	Median	1.1356	1.2363	15.573	2	1	Median	518590000	251700000	266880000	45460000	22540000	22921000	63808000	35932000	27876000	228950000	108600000	120360000	180370000	84636000	95731000	24739	287	23447	154936;154937;154938;154939;154940;154941	209921;209922;209923;209924;209925;209926;209927	209923			7	
IIWAKHSEVQQANLK	2	Acetyl (K)	1805.9788	0.97881763	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	58.328	48.964	2;3	3.5692E-06	26898	160513_QHF_FH_JSI10Kac_6	104.41	79.479			0.61216	0.63861	108.58	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1688	1.3762	NaN	1	0	Median	0.32062	0.29634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106700000	70859000	35842000	0	0	0	48375000	22835000	25540000	54785000	44483000	10302000	3540500	3540500	0	24740	1438	23448	154942;154943;154944;154945	209928;209929;209930;209931;209932;209933	209933	1420		6	
IIWELIK	1	Unmodified	913.56369	0.56368968	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.06		8	7					1	5	7	5	4	5	77.99	74.796	2	0.0051095	66115	160511_QHF_FH_JSI12i_2	83.614	40.614			1.551	1.655	115.76	20	18	Median	1.0427	0.85689	111.63	7	6	Median	2.1669	2.6264	149.4	5	5	Median	2.0341	1.9826	125.2	4	3	Median	1.0273	1.0758	112.61	4	4	Median	5507500000	2748000000	2759500000	1129600000	474960000	654620000	1338400000	654260000	684120000	2186100000	1164800000	1021300000	853480000	454000000	399480000	24741	576	23449	154946;154947;154948;154949;154950;154951;154952;154953;154954;154955;154956;154957;154958;154959;154960;154961;154962;154963;154964;154965;154966	209934;209935;209936;209937;209938;209939;209940;209941;209942;209943;209944;209945;209946;209947;209948;209949;209950;209951;209952;209953;209954;209955;209956;209957;209958	209936			25	
IIWQFIK	1	Unmodified	946.56402	0.56402403	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	4	3	2	2	78.081	74.584	2	0.0085928	37579	160513_QHF_FH_JSI12Kac_6	92.692	55.599			1.2111	1.1305	61.449	11	3	Median	1.4722	1.2174	98.315	4	2	Median	1.1777	1.3821	20.437	3	1	Median	1.1005	1.0326	12.809	2	0	Median	0.95826	1.0038	6.8057	2	0	Median	1993800000	783560000	1210200000	684670000	166020000	518650000	442220000	216840000	225380000	384510000	165910000	218600000	482350000	234790000	247570000	24742	1635	23450	154967;154968;154969;154970;154971;154972;154973;154974;154975;154976;154977	209959;209960;209961;209962;209963;209964;209965;209966;209967;209968;209969;209970;209971	209969			13	
IIYASGLDSHYQTEPHVLAGTANPTVAK	1	Unmodified	2952.4981	0.49813589	5203	Q9P273	TENM3	Teneurin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.029	61.749	4	1.4355E-05	53169	160511_QHF_FH_JSI12i_3	44.555	38.652			1.3699	1.3871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3699	1.3871	NaN	1	0	Median	51300000	22606000	28694000	0	0	0	0	0	0	0	0	0	51300000	22606000	28694000	24743	5203	23451	154978	209972;209973	209972			2	
IIYEAHKR	1	Unmodified	1028.5767	0.57671398	963	P10243	MYBL1	Myb-related protein A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	55.551	54.712	2	0.010248	45836	160511_QHF_FH_JSI10i_3	55.441	1.8868			0.89909	0.84264	7.3377	4	0	Linear	1.2821	1.0425	NaN	1	0	Median	0.80986	0.92407	NaN	1	0	Median	0.96552	0.91724	NaN	1	0	Median	0.83723	0.8787	NaN	1	0	Median	1694100000	880610000	813490000	363110000	159680000	203430000	381530000	214120000	167410000	413980000	212370000	201610000	535480000	294440000	241040000	24744	963	23452	154979;154980;154981;154982	209974;209975	209974			2	
IIYEQEGVYIHSSCGK	1	Unmodified	1881.8931	0.89309867	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.373	41.991	3	0.027177	35908	160511_QHF_FH_JSI12i_2	34.094	24.306			1.3925	1.4984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3925	1.4984	NaN	1	1	Median	16147000	5857400	10289000	0	0	0	0	0	0	0	0	0	16147000	5857400	10289000	24745	3699	23453	154983	209976	209976			1	
IIYGDPVTFLPHLPR	0	Unmodified	1736.9614	0.96137665	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.4	0.49		3	2								2	2	1	93.293	92.781	3	2.4905E-05	82460	160511_QHF_FH_JSI11i_3	102.52	89.642			0.72604	0.81154	10.017	5	1	Median	NaN	NaN	NaN	0	0	Median	0.65083	0.76761	9.0804	2	1	Median	0.93472	0.87973	11.41	2	0	Median	0.72604	0.80649	NaN	1	0	Median	123540000	66716000	56823000	0	0	0	25257000	16278000	8979500	82614000	40346000	42267000	15668000	10092000	5576500	24746	3009	23454	154984;154985;154986;154987;154988	209977;209978;209979	209977			3	
IIYGDPVTFLPHLPRK	1	Unmodified	1865.0563	0.056339672	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			82.472	81.189	4	0.054252	68116	160511_QHF_FH_JSI10i_3	22.911	16.879			0.6543	0.78695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6543	0.78695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7741100	4116500	3624600	0	0	0	7741100	4116500	3624600	0	0	0	0	0	0	24747	3009	23455	154989	209980	209980			1	
IIYGGSVTGATCK	1	Unmodified	1325.6649	0.66493664	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.61	7	6	4			1	4	7	5	6	9	10	9	39.22	34.11	2;3	1.5484E-31	19340	160513_QHF_FH_JSI10Kac_4	175.86	134.83			0.94991	0.97892	21.598	33	1	Median	1.0327	0.87343	11.628	6	0	Median	0.8879	1.0641	14.072	9	0	Median	0.8372	0.82038	14.48	10	0	Median	1.1947	1.2606	10.206	8	1	Median	13245000000	6369800000	6875200000	1379200000	561450000	817740000	3423800000	1752700000	1671100000	4991500000	2566600000	2424900000	3450500000	1489000000	1961500000	24748	1908	23456	154990;154991;154992;154993;154994;154995;154996;154997;154998;154999;155000;155001;155002;155003;155004;155005;155006;155007;155008;155009;155010;155011;155012;155013;155014;155015;155016;155017;155018;155019;155020;155021;155022;155023	209981;209982;209983;209984;209985;209986;209987;209988;209989;209990;209991;209992;209993;209994;209995;209996;209997;209998;209999;210000;210001;210002;210003;210004;210005;210006;210007;210008;210009;210010;210011;210012;210013;210014;210015;210016;210017;210018;210019;210020;210021;210022;210023;210024;210025;210026;210027;210028;210029;210030;210031;210032;210033	210000			51	
IIYIAPMR	0	Unmodified	975.55756	0.55755844	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	3	2	2	1	59.383	54.26	2	0.00060522	29514	160513_QHF_FH_JSI11Kac_6	109.7	109.7			1.4389	1.3489	20.71	8	0	Median	1.5922	1.3669	20.161	3	0	Median	1.2975	1.5316	19.837	2	0	Median	1.5372	1.4262	26.454	2	0	Median	1.0131	1.0363	NaN	1	0	Median	726980000	302480000	424500000	292020000	126200000	165820000	198790000	86889000	111900000	216160000	80870000	135290000	20004000	8517200	11487000	24749	552	23457	155024;155025;155026;155027;155028;155029;155030;155031	210034;210035;210036;210037;210038;210039;210040;210041;210042;210043	210036			10	
IIYIAPMR	0	Oxidation (M)	991.55247	0.55247306	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	15.7	0.471								2	4	2	2	1	1	49.335	39.674	2	0.015386	21474	160513_QHF_FH_JSI9Kac_5	57.463	30.861			0.91342	0.98059	10.316	6	0	Median	1.2483	1.0607	13.438	2	0	Median	0.86261	1.0205	6.3757	2	0	Median	0.87704	0.85894	NaN	1	0	Median	0.90492	0.98569	NaN	1	0	Median	69429000	32007000	37422000	24124000	10948000	13176000	21060000	10686000	10374000	15149000	5820700	9328500	9096400	4552600	4543800	24750	552	23457	155032;155033;155034;155035;155036;155037	210044;210045;210046;210047	210044		204	4	
IIYIVHDEVK	1	Unmodified	1227.6863	0.68632401	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.47		16	13				3	10	12	16	15	12	11	46.577	41.817	2;3	8.314E-06	22711	160513_QHF_FH_JSI11Kac_6	108.98	93.827			0.86235	0.93152	118.33	50	40	Median	0.61613	0.54061	160.62	13	10	Median	0.79383	0.94665	89.067	15	13	Median	0.83726	0.8022	110	12	10	Median	1.0091	1.052	116.11	10	7	Median	9889800000	4462600000	5427100000	1609300000	623120000	986190000	2835700000	1452900000	1382900000	3403300000	1500900000	1902400000	2041400000	885750000	1155700000	24751	1266	23458	155038;155039;155040;155041;155042;155043;155044;155045;155046;155047;155048;155049;155050;155051;155052;155053;155054;155055;155056;155057;155058;155059;155060;155061;155062;155063;155064;155065;155066;155067;155068;155069;155070;155071;155072;155073;155074;155075;155076;155077;155078;155079;155080;155081;155082;155083;155084;155085;155086;155087;155088;155089;155090;155091	210048;210049;210050;210051;210052;210053;210054;210055;210056;210057;210058;210059;210060;210061;210062;210063;210064;210065;210066;210067;210068;210069;210070;210071;210072;210073;210074;210075;210076;210077;210078;210079;210080;210081;210082;210083;210084;210085;210086;210087;210088;210089;210090;210091;210092;210093;210094;210095;210096;210097;210098;210099;210100;210101;210102;210103;210104;210105;210106;210107;210108;210109;210110;210111;210112;210113;210114;210115;210116;210117;210118;210119;210120;210121;210122	210069			75	
IIYIVHDEVKDK	2	Acetyl (K)	1512.8188	0.81879474	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								5			2	1	2	59.31	48.598	2;3	0.025022	24878	160513_QHF_FH_JSI12Kac_5	55.567	37.255			0.090934	0.10067	70.686	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14425	0.16596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.057324	0.061073	NaN	1	1	Median	9411800	7317500	2094200	0	0	0	3871100	2883100	987970	1027800	0	1027800	4512800	4434400	78459	24752	1266	23459	155092;155093;155094;155095;155096	210123;210124;210125;210126;210127	210125	1166		5	
IIYLNQLLQEDSLNVADLTSLR	0	Unmodified	2530.3643	0.36426817	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.6	4.15		7	2						1	3		3	4	101.74	100.61	2;3	4.9188E-29	88069	160511_QHF_FH_JSI12i_2	169.09	140.54			1.1472	1.104	22.098	9	0	Median	1.2617	1.0686	12.695	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0438	1.0873	9.0665	3	0	Median	1.3048	1.4107	25.196	4	0	Median	2577100000	1161900000	1415200000	523580000	231500000	292080000	0	0	0	1154200000	504420000	649750000	899360000	426000000	473360000	24753	5391	23460	155097;155098;155099;155100;155101;155102;155103;155104;155105;155106	210128;210129;210130;210131;210132;210133;210134	210130			4	
IIYPTAPPR	0	Unmodified	1026.5862	0.58621603	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.436	37.984	2	0.044242	32411	160511_QHF_FH_JSI11i_2	40.067	14.241			1.0847	1.0612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0847	1.0612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49572000	23628000	25944000	0	0	0	0	0	0	49572000	23628000	25944000	0	0	0	24754	2996	23461	155107	210135	210135			1	
IIYSHFTCATDTENIR	0	Unmodified	1939.9098	0.90981137	1330;1697	P29992;P50148	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			55.48	46.613	3	0.001344	25688	160513_QHF_FH_JSI10Kac_6	67.605	49.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24755	1330;1697	23462	155108;155109	210136;210137	210137			2	
IKAEYEGDGIPTVFVAVAGR	1	Unmodified	2091.1001	0.10005498	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	2	2	82.545	82.167	3	6.8726E-05	73265	160511_QHF_FH_JSI11i_3	75.358	66.416			0.85279	0.78869	47.993	5	5	Median	0.35544	0.30771	NaN	1	1	Median	0.45392	0.50496	NaN	1	1	Median	0.92422	0.85578	11.546	2	2	Median	0.90647	0.93869	NaN	1	1	Median	291610000	178530000	113070000	42830000	30987000	11843000	30611000	19723000	10887000	177320000	105120000	72203000	40847000	22709000	18139000	24756	1206	23463	155110;155111;155112;155113;155114;155115	210138;210139;210140;210141;210142;210143;210144	210138			7	
IKDDGPSQSESATETAMTLPSESR	1	Unmodified	2536.1599	0.15989064	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	46.563	45.71	3	3.445E-28	40745	160511_QHF_FH_JSI9i_1	159.98	156.97			1.0554	1.0212	26.392	9	2	Median	1.2595	1.0212	36.585	3	1	Plateau	0.99117	1.1805	11.943	2	1	Median	1.083	1.0648	8.6767	2	0	Median	0.82713	0.88173	27.267	2	0	Median	671520000	341490000	330030000	163470000	77468000	85999000	186180000	104220000	81964000	175810000	87563000	88250000	146060000	72241000	73816000	24757	4803	23464	155116;155117;155118;155119;155120;155121;155122;155123;155124	210145;210146;210147;210148;210149;210150;210151;210152;210153;210154;210155;210156;210157;210158;210159;210160;210161	210155			17	
IKDEFQFLQAQYHSLK	2	Unmodified	1994.0262	0.026161756	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			69.387	67.916	3	0.044853	56975	160511_QHF_FH_JSI10i_3	47.916	36.801			1.0532	1.2146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38403000	10616000	27787000	0	0	0	38403000	10616000	27787000	0	0	0	0	0	0	24758	2220	23465	155125	210162	210162			0	
IKDEFQLLQAQYHSLK	2	Unmodified	1960.0418	0.04181182	2262	Q08117	AES	Amino-terminal enhancer of split	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	64.76	64.615	3;4	1.9113E-05	55804	160511_QHF_FH_JSI12i_3	95.954	85.854			0.90601	0.88765	18.003	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81496	0.75706	14.15	2	0	Median	0.96554	0.99032	7.1215	2	0	Median	901840000	506300000	395530000	0	0	0	0	0	0	260020000	155940000	104080000	641810000	350370000	291450000	24759	2262	23466	155126;155127;155128;155129;155130	210163;210164;210165;210166;210167;210168;210169	210167			7	
IKDPDASKPEDWDER	2	Unmodified	1799.8326	0.83260691	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	2.61		30	22						2	14	20	17	3	30.077	29.024	2;3;4	1.109E-37	24321	160511_QHF_FH_JSI11i_3	203.87	164.69			0.89935	0.89683	40.76	47	17	Median	1.092	0.96067	48.791	9	4	Median	0.78681	0.91983	35.313	19	7	Median	0.90347	0.86435	42.885	16	6	Median	0.76612	0.79264	19.091	3	0	Plateau	8867900000	4519200000	4348800000	775660000	376980000	398690000	2551100000	1325200000	1225900000	4757400000	2467600000	2289800000	783770000	349430000	434340000	24760	1297	23467	155131;155132;155133;155134;155135;155136;155137;155138;155139;155140;155141;155142;155143;155144;155145;155146;155147;155148;155149;155150;155151;155152;155153;155154;155155;155156;155157;155158;155159;155160;155161;155162;155163;155164;155165;155166;155167;155168;155169;155170;155171;155172;155173;155174;155175;155176;155177;155178;155179;155180;155181;155182;155183;155184	210170;210171;210172;210173;210174;210175;210176;210177;210178;210179;210180;210181;210182;210183;210184;210185;210186;210187;210188;210189;210190;210191;210192;210193;210194;210195;210196;210197;210198;210199;210200;210201;210202;210203;210204;210205;210206;210207;210208;210209;210210;210211;210212;210213;210214;210215;210216;210217;210218;210219;210220;210221;210222;210223;210224;210225;210226;210227;210228;210229;210230;210231;210232;210233;210234;210235;210236;210237;210238;210239;210240;210241;210242;210243;210244;210245;210246;210247;210248;210249;210250;210251;210252;210253;210254;210255;210256;210257;210258;210259;210260;210261;210262;210263;210264	210179			93	
IKDTVLQR	1	Unmodified	971.57638	0.57637963	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.319	16.319	3	0.020542	13467	160511_QHF_FH_JSI11i_3	37.591	12.77			0.71395	0.6716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71395	0.6716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121880000	62343000	59540000	0	0	0	0	0	0	121880000	62343000	59540000	0	0	0	24761	1205	23468	155185	210265;210266	210265			2	
IKEDDAPR	1	Unmodified	942.47706	0.47705951	1261	P25490	YY1	Transcriptional repressor protein YY1	yes	yes	0	0	0	1			By MS/MS	By matching	2	0		2										1	1	6.8613	6.4623	2	0.049539	4168	160511_QHF_FH_JSI11i_2	60.118	32.236			0.80545	0.8274	1.2073	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85123	0.83449	NaN	1	0	Median	0.76214	0.82037	NaN	1	0	Median	82101000	46398000	35703000	0	0	0	0	0	0	55283000	32143000	23140000	26818000	14255000	12563000	24762	1261	23469	155186;155187	210267	210267			1	
IKEDEDDK	2	Unmodified	990.45057	0.45056999	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	5.33	7	2						2		2	3	3	3	5.0761	3.0867	2;3	0.0012439	2692	160511_QHF_FH_JSI10i_1	122.13	67.978			1.1913	1.3019	43.36	11	0	Median	0.6837	0.56937	43.305	2	0	Median	1.1913	1.4001	4.9233	3	0	Median	1.8396	1.7753	20.479	3	0	Plateau	1.1089	1.1742	26.557	3	0	Plateau	6066200000	2687700000	3378500000	759540000	399650000	359900000	1611200000	767560000	843600000	1760300000	631280000	1129000000	1935200000	889180000	1046000000	24763	1057	23470	155188;155189;155190;155191;155192;155193;155194;155195;155196;155197;155198	210268;210269;210270;210271;210272;210273;210274;210275;210276;210277	210273			9	
IKEDNFFQVSK	2	Unmodified	1353.6929	0.69286595	3938	Q969G6	RFK	Riboflavin kinase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	45.114	44.953	2;3	6.4791E-05	38457	160511_QHF_FH_JSI12i_3	83.314	67.061			0.95708	0.95882	21.602	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5394	1.4699	NaN	1	0	Median	1.035	1.0377	11.181	2	0	Median	332760000	155840000	176920000	0	0	0	0	0	0	26443000	11459000	14983000	306320000	144380000	161940000	24764	3938	23471	155199;155200;155201	210278;210279;210280	210280			3	
IKEEAVK	2	Unmodified	815.47527	0.4752686	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.3977	6.4954	3	0.02981	4080	160511_QHF_FH_JSI12i_3	40.268	7.9135			1.1137	1.1698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1137	1.1698	NaN	1	1	Median	539420000	296980000	242440000	0	0	0	0	0	0	0	0	0	539420000	296980000	242440000	24765	596	23472	155202	210281	210281			1	
IKEEMEAFPEK	2	Unmodified	1349.6537	0.65370325	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		1	3	35.145	34.82	2;3	0.00050068	29454	160511_QHF_FH_JSI12i_3	56.122	47.712			0.96665	0.99383	33.539	4	3	Median	1.6057	1.3565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6298	0.60333	NaN	1	1	Median	0.96665	0.99383	2.0136	2	1	Median	305390000	153240000	152150000	71884000	26739000	45145000	0	0	0	55440000	33797000	21643000	178070000	92701000	85365000	24766	2901	23473	155203;155204;155205;155206;155207	210282;210283;210284;210285;210286	210284			5	
IKEEMEAFPEKF	2	Unmodified	1496.7221	0.72211717	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	57.042	56.788	3	0.00026595	48849	160511_QHF_FH_JSI12i_3	79.633	66.496			1.1571	1.1666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1571	1.1666	NaN	1	0	Median	150030000	63364000	86667000	0	0	0	0	0	0	0	0	0	150030000	63364000	86667000	24767	2901	23474	155208	210287;210288	210288			2	
IKEENFVSPK	2	Unmodified	1189.6343	0.63428844	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	1	3	3	26.584	24.914	2;3	0.00079065	21449	160511_QHF_FH_JSI9i_2	56.225	40.133			0.99775	1.0074	21.942	8	2	Median	1.3531	1.1516	NaN	1	0	Median	0.8359	1.0055	NaN	1	0	Median	1.3615	1.3359	37.152	3	2	Plateau	0.99349	1.005	8.6439	3	0	Median	1340600000	665770000	674850000	84291000	33475000	50816000	117520000	77602000	39919000	307170000	161080000	146090000	831630000	393620000	438020000	24768	132	23475	155209;155210;155211;155212;155213;155214;155215;155216	210289;210290;210291;210292;210293;210294;210295	210290			7	
IKELFSK	2	Unmodified	863.51165	0.5116541	4192	Q96P63	SERPINB12	Serpin B12	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.395	40.199	3	0.030191	34318	160511_QHF_FH_JSI12i_3	38.792	8.6066			0.8968	0.94836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8968	0.94836	NaN	1	0	Median	70431000	40313000	30118000	0	0	0	0	0	0	0	0	0	70431000	40313000	30118000	24769	4192	23476	155217	210296	210296			1	
IKFDQSVDPEIIAR	1	Unmodified	1629.8726	0.87262123	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	64.84	64.131	3	0.00022501	55293	160511_QHF_FH_JSI12i_3	55.186	44.847			0.92524	0.81013	26.677	5	2	Median	0.94282	0.81013	NaN	1	0	Median	0.68041	0.82042	44.272	2	1	Median	0.92524	0.86562	NaN	1	1	Median	0.59258	0.59712	NaN	1	0	Median	252570000	147200000	105370000	43649000	25572000	18077000	47598000	28609000	18989000	79285000	42376000	36909000	82037000	50646000	31390000	24770	4261	23477	155218;155219;155220;155221;155222	210297;210298;210299;210300	210300			4	
IKFESLEIK	2	Unmodified	1105.6383	0.63831118	555	O75665	OFD1	Oral-facial-digital syndrome 1 protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	55.392	55.15	3	0.0046963	47369	160511_QHF_FH_JSI12i_3	49.189	30.517			1.1303	1.151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1303	1.151	NaN	1	0	Median	36787000	18670000	18117000	0	0	0	0	0	0	0	0	0	36787000	18670000	18117000	24771	555	23478	155223	210301;210302	210302			2	
IKFPDNPEK	2	Unmodified	1086.571	0.5709599	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	30.912	30.204	3	5.979E-05	25264	160511_QHF_FH_JSI12i_3	90.108	69.238			0.97288	1.0472	23.533	4	0	Median	1.759	1.4267	NaN	1	0	Median	0.93168	1.0781	NaN	1	0	Median	0.86383	0.80473	NaN	1	0	Median	1.0159	1.0171	NaN	1	0	Median	411520000	232580000	178930000	38572000	15845000	22727000	61528000	33089000	28439000	116750000	79471000	37275000	194670000	104180000	90489000	24772	3817	23479	155224;155225;155226;155227	210303;210304;210305;210306	210306			4	
IKFPLPHR	1	Acetyl (K)	1048.6182	0.61818486	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.417	52.718	3	0.042455	28507	160513_QHF_FH_JSI11Kac_6	36.211	27.438			0.039499	0.037891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.039499	0.037891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10746000	10660000	86342	0	0	0	0	0	0	10746000	10660000	86342	0	0	0	24773	2190	23480	155228	210307	210307			1	
IKFPTMK	2	Unmodified	863.4939	0.49389555	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	39.315	38.515	3	0.0098212	33602	160511_QHF_FH_JSI11i_3	55.676	18.655			0.98566	0.98593	21.713	4	0	Median	1.6447	1.3576	NaN	1	0	Median	0.69618	0.82691	NaN	1	0	Median	0.94003	0.90853	NaN	1	0	Median	1.0335	1.0699	NaN	1	0	Median	371110000	184010000	187100000	71036000	28357000	42679000	93561000	52985000	40576000	62291000	30924000	31367000	144220000	71745000	72473000	24774	2286	23481	155229;155230;155231;155232	210308;210309;210310;210311;210312;210313;210314;210315	210308			8	
IKGDMDISVPK	2	Unmodified	1201.6377	0.63765925	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	40.729	40.198	2;3	0.00062518	34271	160511_QHF_FH_JSI12i_3	60.161	49.256			1.0447	1.078	16.387	6	0	Median	NaN	NaN	NaN	0	0	Median	0.84438	1.0426	NaN	1	0	Median	1.0447	1.029	10.638	2	0	Median	1.4738	1.492	17.755	3	0	Plateau	1072900000	529650000	543200000	0	0	0	100770000	62133000	38638000	154030000	77875000	76155000	818050000	389640000	428410000	24775	2286	23482	155233;155234;155235;155236;155237;155238	210316;210317;210318;210319;210320;210321	210321			4	
IKGDVDVSAPK	2	Unmodified	1127.6186	0.61863837	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		1	3	21.468	21.467	2;3	5.7794E-05	17514	160511_QHF_FH_JSI12i_3	117.25	19.517			2.1154	2.0759	89.487	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2462	1.1594	NaN	1	0	Median	3.5909	3.7171	97.685	3	3	Median	762440000	238870000	523570000	0	0	0	0	0	0	102230000	50559000	51676000	660200000	188310000	471890000	24776	2286	23483	155239;155240;155241;155242;155243	210322;210323;210324;210325;210326;210327	210326			6	
IKGDVDVTGPK	2	Unmodified	1127.6186	0.61863837	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	20.403	19.978	3	0.00035543	15980	160511_QHF_FH_JSI12i_3	77.597	7.7333			1.4647	1.3158	52.796	6	5	Median	1.607	1.3764	NaN	1	1	Median	1.1257	1.3894	110.62	2	2	Median	1.2432	1.1614	11.285	2	1	Median	1.8866	1.8867	NaN	1	1	Median	1141500000	521810000	619680000	59638000	26711000	32927000	147520000	68057000	79465000	576000000	271360000	304640000	358340000	155690000	202650000	24777	2286	23484	155244;155245;155246;155247;155248;155249	210328;210329;210330;210331;210332;210333	210333			6	
IKGDVPSVGLEGPDVDLQGPEAK	2	Unmodified	2319.1958	0.19580586	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							2	2	2	3	68.886	68.289	3	1.9035E-19	59214	160511_QHF_FH_JSI12i_3	145.55	140.79			1.0424	0.98835	52.624	8	3	Median	1.0558	0.91435	NaN	1	1	Median	0.96926	1.1619	54.325	2	1	Median	0.84256	0.82818	25.82	2	0	Median	1.4416	1.5728	63.388	3	1	Median	657360000	313380000	343980000	56289000	27691000	28598000	99075000	50985000	48089000	227200000	116890000	110320000	274800000	117820000	156980000	24778	2286	23485	155250;155251;155252;155253;155254;155255;155256;155257;155258	210334;210335;210336;210337;210338;210339;210340;210341;210342;210343;210344;210345	210344			12	
IKGEEFPLTLGR	1	Unmodified	1358.7558	0.75580056	3802	Q8WWV3	RTN4IP1	Reticulon-4-interacting protein 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	58.28	58.149	3	0.00074686	51502	160511_QHF_FH_JSI11i_3	60.161	53.502			0.9514	0.93148	18.972	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1367	1.0652	NaN	1	0	Median	0.79632	0.81454	NaN	1	0	Median	130880000	60215000	70667000	0	0	0	0	0	0	105030000	44777000	60255000	25849000	15437000	10412000	24779	3802	23486	155259;155260	210346;210347	210346			2	
IKGEELSEANVR	1	Unmodified	1343.7045	0.70449327	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	3	3	23.863	23.577	2;3	5.0474E-05	19874	160511_QHF_FH_JSI11i_3	86.288	74.369			0.86208	0.83539	19.285	8	3	Median	0.88855	0.76611	NaN	1	0	Median	0.60284	0.74324	NaN	1	0	Median	1.0924	1.0343	11.815	3	1	Plateau	0.55782	0.57184	26.231	3	2	Plateau	819380000	471030000	348340000	56008000	29863000	26145000	82024000	56513000	25511000	417900000	221660000	196250000	263440000	163000000	100440000	24780	2516	23487	155261;155262;155263;155264;155265;155266;155267;155268	210348;210349;210350;210351;210352;210353;210354;210355;210356	210348			9	
IKGEHPGLSIGDVAK	2	Unmodified	1519.8358	0.83584179	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.88		3	18						8	7	8	8	6	39.069	35.909	2;3;4	2.795E-09	29261	160511_QHF_FH_JSI9i_3	142.85	100.85			0.78173	0.80896	69.477	28	5	Median	1.0967	0.86119	54.395	7	2	Median	0.78366	0.95206	59.804	7	2	Median	0.39875	0.3792	96.938	8	0	Median	0.76228	0.78989	35.449	6	1	Median	23579000000	11539000000	12040000000	5175200000	2015600000	3159600000	6396500000	3501100000	2895400000	6052800000	3377000000	2675800000	5954700000	2645600000	3309100000	24781	928	23488	155269;155270;155271;155272;155273;155274;155275;155276;155277;155278;155279;155280;155281;155282;155283;155284;155285;155286;155287;155288;155289;155290;155291;155292;155293;155294;155295;155296;155297	210357;210358;210359;210360;210361;210362;210363;210364;210365;210366;210367;210368;210369;210370;210371;210372;210373;210374;210375;210376;210377;210378;210379;210380;210381;210382;210383;210384;210385;210386;210387;210388;210389;210390;210391;210392;210393;210394;210395;210396;210397;210398;210399;210400;210401;210402;210403;210404;210405;210406;210407;210408;210409;210410;210411;210412;210413;210414;210415;210416;210417;210418;210419;210420;210421;210422;210423;210424;210425	210395			68	
IKIIAPPER	1	Acetyl (K)	1077.6546	0.65462995	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4		1	1	2	1	61.377	50.573	2	0.010604	27598	160513_QHF_FH_JSI11Kac_5	61.691	27.439			0.70814	0.84062	40.03	5	0	Median	1.5863	1.3267	NaN	1	0	Median	0.70814	0.84062	NaN	1	0	Median	0.60134	0.58011	8.45	2	0	Median	1.1097	1.2425	NaN	1	0	Median	28162000	14636000	13526000	5162300	1416500	3745800	4507800	2777500	1730300	12377000	7387200	4989400	6114900	3054800	3060100	24782	1916;2015;2062;2070;2865	23489	155298;155299;155300;155301;155302	210426;210427;210428	210428	1915;2701		3	
IKIIAPPERK	2	Acetyl (K)	1205.7496	0.74959297	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	49.858	40.038	3	0.0016851	20643	160513_QHF_FH_JSI10Kac_5	80.979	68.403			0.88346	0.95402	40.681	7	0	Median	0.99611	0.85342	15.76	2	0	Median	0.91311	1.0917	9.8407	2	0	Median	0.52111	0.50472	50.863	2	0	Median	0.97454	1.0527	NaN	1	0	Median	115850000	64528000	51321000	17343000	8535300	8807900	50878000	29035000	21843000	22955000	13776000	9179300	24673000	13182000	11491000	24783	1916;2015;2062;2070;2865	23490	155303;155304;155305;155306;155307;155308;155309	210429;210430;210431;210432;210433;210434;210435;210436;210437;210438;210439;210440	210434	1915;2701		11	
IKLDVPEDLR	1	Unmodified	1196.6765	0.6764876	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	56.238	56.114	3	0.0051056	48328	160511_QHF_FH_JSI12i_3	45.653	34.44			1.0423	1.0311	3.8612	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1035	1.0596	NaN	1	0	Median	0.98451	1.0033	NaN	1	0	Median	118370000	56081000	62284000	0	0	0	0	0	0	54893000	25245000	29648000	63472000	30836000	32636000	24784	2248	23491	155310;155311	210441;210442	210442			2	
IKLELHQLK	2	Unmodified	1120.6968	0.69682911	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.638	38.458	4	0.001193	32793	160511_QHF_FH_JSI12i_3	64.711	39.152			0.81571	0.82756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81571	0.82756	NaN	1	1	Median	34371000	18536000	15835000	0	0	0	0	0	0	0	0	0	34371000	18536000	15835000	24785	3970	23492	155312	210443;210444	210444			2	
IKLETVDPTYIFHPR	1	Unmodified	1827.9883	0.98831969	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	77.868	77.261	3;4	7.3093E-05	68763	160511_QHF_FH_JSI11i_3	80.706	75.163			0.99311	0.93857	10.675	5	1	Median	1.1038	0.92201	NaN	1	0	Median	0.72802	0.83612	NaN	1	0	Median	1.0725	0.99796	8.677	2	1	Median	0.95027	1.0824	NaN	1	0	Median	181230000	82399000	98832000	14147000	5911300	8235300	23890000	12207000	11683000	69886000	32162000	37725000	73309000	32120000	41189000	24786	647	23493	155313;155314;155315;155316;155317	210445;210446;210447;210448;210449;210450;210451;210452;210453	210445			9	
IKLSPFWK	2	Acetyl (Protein N-term)	1059.6117	0.6117025	5830				yes	yes	0	1	0	1			By MS/MS		16	0									1			1		101.26	91.833	2	0.061119	52739	160513_QHF_FH_JSI11Kac_6	38.792	14.637	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9315900	9315900	0	0	0	0	0	0	0	9315900	9315900	0	0	0	0	24787	5830	23494	155318	210454	210454			1	
IKNENTEGSPQEDGVELEGLK	2	Unmodified	2285.1023	0.1022994	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	45.781	45.379	3	5.8991E-13	39983	160511_QHF_FH_JSI11i_3	113.17	92.515			0.7461	1.0003	35.663	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.59685	0.74167	NaN	1	1	Median	0.7461	0.7146	NaN	1	1	Median	1.3254	1.3491	NaN	1	1	Median	93819000	52146000	41674000	0	0	0	29793000	22877000	6916700	30421000	19144000	11277000	33605000	10125000	23480000	24788	999	23495	155319;155320;155321;155322;155323;155324;155325	210455;210456;210457;210458;210459;210460;210461	210456			7	
IKNEVDSTLTFR	1	Unmodified	1421.7514	0.75144346	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	41.518	41.413	3	1.5108E-06	36459	160511_QHF_FH_JSI11i_3	106.32	84.692			0.97908	0.95021	14.416	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93309	0.85812	NaN	1	0	Median	1.0273	1.0522	NaN	1	0	Median	250050000	113240000	136820000	0	0	0	0	0	0	138070000	67577000	70493000	111990000	45659000	66327000	24789	1196	23496	155326;155327	210462;210463;210464	210462			3	
IKPAATSHVEGSGGVSAK	2	Unmodified	1694.8951	0.89514758	4173	Q96ME7	ZNF512	Zinc finger protein 512	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	15.176	14.526	3;4	9.0009E-05	11658	160511_QHF_FH_JSI10i_3	49.865	43.961			1.2277	0.99468	28.155	6	2	Median	1.2277	0.99468	3.2562	2	0	Median	0.69384	0.82401	1.5643	2	0	Median	1.7403	1.6397	NaN	1	1	Median	1.3353	1.3827	NaN	1	1	Median	367110000	178010000	189100000	134390000	61213000	73175000	150720000	84860000	65862000	59649000	23355000	36294000	22347000	8578100	13769000	24790	4173	23497	155328;155329;155330;155331;155332;155333	210465;210466;210467;210468;210469	210467			5	
IKPHLMSQELPEDWDK	2	Oxidation (M)	1980.9615	0.96151259	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		50.341	49.439	3;4	1.3995E-05	41784	160511_QHF_FH_JSI10i_3	118.31	100.82			1.1307	1.1566	23.6	7	0	Median	1.2465	1.0017	20.341	2	0	Median	0.91545	1.0431	30.047	2	0	Median	1.3145	1.237	31.629	3	0	Median	NaN	NaN	NaN	0	0	Median	1090000000	534520000	555440000	336400000	153220000	183170000	258220000	133340000	124880000	495350000	247960000	247390000	0	0	0	24791	867	23498	155334;155335;155336;155337;155338;155339;155340	210470;210471;210472;210473;210474;210475;210476;210477;210478;210479;210480;210481;210482;210483;210484;210485;210486;210487	210479		407	17	
IKPHLMSQELPEDWDK	2	Unmodified	1964.9666	0.96659797	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	2.71			42						2	14	17	10	3	60.513	58.984	2;3;4	8.2156E-27	51018	160511_QHF_FH_JSI11i_3	150.11	117.78			0.83987	0.8154	36.63	40	16	Median	1.0104	0.80048	57.375	13	7	Median	0.68261	0.78999	23.293	16	7	Median	0.8904	0.83606	24.918	8	2	Median	0.83314	0.85455	3.5766	3	0	Median	9765300000	4774600000	4990600000	2640700000	1202100000	1438600000	3119600000	1782600000	1336900000	3696900000	1605000000	2091900000	308060000	184880000	123170000	24792	867	23498	155341;155342;155343;155344;155345;155346;155347;155348;155349;155350;155351;155352;155353;155354;155355;155356;155357;155358;155359;155360;155361;155362;155363;155364;155365;155366;155367;155368;155369;155370;155371;155372;155373;155374;155375;155376;155377;155378;155379;155380;155381;155382;155383;155384	210488;210489;210490;210491;210492;210493;210494;210495;210496;210497;210498;210499;210500;210501;210502;210503;210504;210505;210506;210507;210508;210509;210510;210511;210512;210513;210514;210515;210516;210517;210518;210519;210520;210521;210522;210523;210524;210525;210526;210527;210528;210529;210530;210531;210532;210533;210534;210535;210536;210537;210538;210539;210540;210541;210542;210543;210544;210545;210546;210547;210548;210549;210550;210551;210552;210553;210554;210555;210556;210557;210558	210504			71	
IKPHLMSQELPEDWDK	2	Acetyl (K)	2006.9772	0.97716265	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.108	66.784	3	1.8546E-11	36378	160513_QHF_FH_JSI11Kac_6	128.59	103.63			0.2464	0.23874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2464	0.23874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101450000	84333000	17117000	0	0	0	0	0	0	101450000	84333000	17117000	0	0	0	24793	867	23498	155385	210559;210560;210561	210561	568;569		3	
IKPHLMSQELPEDWDKQPVK	3	Acetyl (K)	2459.2519	0.25188095	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	2			By MS/MS		16	0									2			2		72.863	63.48	3;4	0.00097818	34416	160513_QHF_FH_JSI11Kac_6	80.236	73.122			0.80709	0.73983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80709	0.73983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69568000	45361000	24208000	0	0	0	0	0	0	69568000	45361000	24208000	0	0	0	24794	867	23499	155386;155387	210562;210563	210562	568;569		2	
IKPLGPMLLNGLTK	2	Unmodified	1493.9004	0.9003563	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	2	3	78.501	77.963	3	1.9658E-10	65725	160511_QHF_FH_JSI10i_3	109.84	75.452			0.96173	0.88949	13.826	3	3	Median	NaN	NaN	NaN	0	0	Median	0.74602	0.87996	NaN	1	1	Median	0.96173	0.88949	NaN	1	1	Median	1.0898	1.1239	NaN	1	1	Median	366240000	166170000	200070000	0	0	0	95928000	60418000	35509000	88189000	36812000	51377000	182130000	68944000	113180000	24795	2997	23500	155388;155389;155390;155391;155392;155393;155394	210564;210565;210566;210567;210568;210569;210570	210567			7	
IKPNAITYGYYNK	2	Unmodified	1543.8035	0.80347903	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	42.059	41.227	2;3	7.4271E-05	33904	160511_QHF_FH_JSI9i_3	64.224	61.256			0.8903	0.86619	7.6333	4	1	Median	1.0755	0.86167	NaN	1	0	Median	0.85842	0.99297	NaN	1	0	Median	0.92337	0.87073	NaN	1	1	Median	0.81346	0.83556	NaN	1	0	Median	319260000	149440000	169820000	92931000	30216000	62715000	70412000	38381000	32031000	57721000	31955000	25765000	98196000	48886000	49310000	24796	3000	23501	155395;155396;155397;155398;155399	210571;210572;210573;210574;210575;210576;210577	210576			6	
IKPPGPTAVPK	2	Unmodified	1103.6703	0.67028001	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	29.925	28.583	3	0.00084052	23254	160511_QHF_FH_JSI9i_3	62.338	28.961			0.71081	0.84164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71081	0.84164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54546000	27989000	26557000	0	0	0	54546000	27989000	26557000	0	0	0	0	0	0	24797	5481	23502	155400;155401;155402	210578;210579;210580	210579			3	
IKPSESNVTILGR	1	Unmodified	1412.7987	0.798728	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				41.191	39.655	3	0.00076817	32477	160511_QHF_FH_JSI9i_3	68.034	56.058			1.2725	1.0338	NaN	1	1	Median	1.2725	1.0338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78969000	26438000	52531000	78969000	26438000	52531000	0	0	0	0	0	0	0	0	0	24798	540	23503	155403	210581	210581			1	
IKPSQNTETLELLLK	2	Unmodified	1725.9877	0.98765098	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			72.687	71.239	3	0.00011502	59728	160511_QHF_FH_JSI10i_3	96.414	83.295			0.73279	0.85525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73279	0.85525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62929000	38911000	24018000	0	0	0	62929000	38911000	24018000	0	0	0	0	0	0	24799	5053	23504	155404	210582	210582			1	
IKPTSAWNLAQK	2	Unmodified	1355.7561	0.75613491	1821	P54277	PMS1	PMS1 protein homolog 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.378	42.778	3	0.0017242	34914	160511_QHF_FH_JSI9i_3	62.694	53.866			0.65848	0.54996	NaN	1	1	Median	0.65848	0.54996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14012000	7917100	6095300	14012000	7917100	6095300	0	0	0	0	0	0	0	0	0	24800	1821	23505	155405	210583	210583			1	
IKPVLMMNK	2	Oxidation (M)	1088.6086	0.60860773	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			14						6	6	3	5	6	33.917	30.359	3	0.00066415	26664	160511_QHF_FH_JSI12i_3	76.064	63.108			0.90028	0.93964	100.28	17	2	Median	0.97838	0.81474	112.75	5	1	Median	0.88919	1.0143	6.9364	2	0	Median	1.0536	1.0189	114.41	5	1	Median	0.80786	0.80635	99.947	5	0	Median	6247300000	3348100000	2899200000	1652600000	943260000	709320000	756150000	364300000	391850000	1665400000	736860000	928550000	2173100000	1303700000	869440000	24801	1033	23506	155406;155407;155408;155409;155410;155411;155412;155413;155414;155415;155416;155417;155418;155419;155420;155421;155422;155423;155424;155425	210584;210585;210586;210587;210588;210589;210590;210591;210592;210593;210594;210595;210596;210597;210598;210599;210600;210601;210602;210603;210604;210605;210606	210598		633;634	23	
IKPVLMMNK	2	Unmodified	1072.6137	0.61369311	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.98		2	17						4	5	6	6	6	41.645	39.394	2;3	5.1291E-06	32339	160511_QHF_FH_JSI9i_3	122.19	91.501			0.97154	0.99843	83.49	23	16	Median	1.0288	0.88565	99.472	5	4	Median	0.91434	1.1002	76.818	6	4	Median	0.98138	0.96901	58.938	6	4	Median	0.65221	0.68141	104.36	6	4	Median	115230000000	55120000000	60108000000	31819000000	13770000000	18050000000	27169000000	14106000000	13063000000	27009000000	12280000000	14729000000	29231000000	14964000000	14267000000	24802	1033	23506	155426;155427;155428;155429;155430;155431;155432;155433;155434;155435;155436;155437;155438;155439;155440;155441;155442;155443;155444;155445;155446;155447;155448	210607;210608;210609;210610;210611;210612;210613;210614;210615;210616;210617;210618;210619;210620;210621;210622;210623;210624;210625;210626;210627;210628;210629;210630;210631;210632;210633;210634;210635;210636;210637;210638;210639;210640;210641;210642;210643;210644;210645	210628			39	
IKPVLMMNK	2	2 Oxidation (M)	1104.6035	0.60352235	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	21.896	21.283	3	0.0083594	33005	160511_QHF_FH_JSI12i_3	51.949	44.976			1.2981	1.2501	116.65	6	1	Median	1.2804	1.0106	27.545	2	0	Median	1.3756	1.5649	NaN	1	0	Median	0.97515	0.93151	NaN	1	0	Median	4.7628	4.8832	190.17	2	1	Median	4221900000	1646100000	2575800000	2095900000	829760000	1266100000	487000000	213280000	273720000	425330000	271290000	154040000	1213700000	331780000	881880000	24803	1033	23506	155449;155450;155451;155452;155453;155454	210646;210647;210648;210649;210650	210650		633;634	5	
IKPVLMMNK	2	Acetyl (K)	1114.6243	0.6242578	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.165	59.652	2	0.037439	32235	160513_QHF_FH_JSI11Kac_6	55.531	26.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20549000	20549000	0	0	0	0	0	0	0	20549000	20549000	0	0	0	0	24804	1033	23506	155455	210651	210651			1	
IKQEILPEER	1	Unmodified	1253.698	0.69795133	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	3.76		4	5					1		2	3	2	3	30.141	28.628	2;3	0.0002408	24995	160511_QHF_FH_JSI10i_2	71.085	65.05			1.0603	1.1367	18.617	10	0	Median	1.8402	1.5914	0.84135	2	0	Median	0.91796	1.1258	10.552	3	0	Median	1.1307	1.0604	11.198	2	0	Median	0.98382	1.0785	17.073	3	0	Median	862250000	384560000	477690000	142350000	57168000	85181000	226930000	109890000	117050000	354840000	149720000	205120000	138130000	67780000	70348000	24805	543	23507	155456;155457;155458;155459;155460;155461;155462;155463;155464;155465	210652;210653;210654;210655;210656;210657;210658;210659;210660;210661;210662	210661			11	
IKSEHPGLSIGDTAK	2	Acetyl (K)	1593.8362	0.83623572	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		46.325	35.895	3	0.036472	20294	160513_QHF_FH_JSI11Kac_5	37.583	28.05			0.13977	0.13409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13977	0.13409	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2445200	2197300	247940	0	0	0	0	0	0	2445200	2197300	247940	0	0	0	24806	1280	23508	155466	210663	210663			1	
IKSKIPNEHK	3	2 Acetyl (K)	1276.7139	0.71393574	3857	Q92613	JADE3	Protein Jade-3	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By matching	By matching	15.7	0.745							1		5	2	2	1	1	25.913	17.028	2;3	2.9372E-05	12515	160513_QHF_FH_JSI10Kac_6	97.911	81.774			1.0836	1.0399	17.959	5	0	Median	1.2021	1.0645	16.813	2	0	Median	0.63297	0.74448	NaN	1	0	Median	1.0836	1.0399	NaN	1	0	Median	1.0011	1.0736	NaN	1	0	Median	641490000	245720000	395770000	482830000	167680000	315150000	64538000	33467000	31071000	30038000	10869000	19169000	64088000	33707000	30381000	24807	3857	23509	155467;155468;155469;155470;155471;155472	210664;210665;210666;210667	210666	2963;2964;2965		4	
IKSKIPNEHKK	4	3 Acetyl (K)	1446.8195	0.81946344	3857	Q92613	JADE3	Protein Jade-3	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.662							4	7	2	2	4	4	3	35.977	26.461	2;3	1.6795E-07	16081	160513_QHF_FH_JSI12Kac_4	105.65	59.494			0.93256	0.95934	14.42	13	0	Median	0.9582	0.81463	3.0894	2	0	Median	0.80365	0.95014	7.4046	4	0	Median	1.1511	1.1429	14.994	4	0	Median	0.89197	0.97164	3.2384	3	0	Median	804950000	402220000	402730000	105740000	51403000	54339000	275750000	145930000	129820000	217600000	107470000	110140000	205860000	97425000	108430000	24808	3857	23510	155473;155474;155475;155476;155477;155478;155479;155480;155481;155482;155483;155484;155485	210668;210669;210670;210671;210672;210673;210674;210675;210676;210677;210678;210679;210680;210681;210682;210683;210684;210685;210686	210677	2963;2964;2965		19	
IKSKIPNEHKK	4	2 Acetyl (K)	1404.8089	0.80889876	3857	Q92613	JADE3	Protein Jade-3	yes	yes	2	0	0	3		By MS/MS			16	0									1		1			22.853	15.826	4	0.011389	9246	160513_QHF_FH_JSI10Kac_6	35.204	26.691			0.67941	0.81321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67941	0.81321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19778000	12559000	7218200	0	0	0	19778000	12559000	7218200	0	0	0	0	0	0	24809	3857	23510	155486	210687	210687	2963;2964;2965		1	
IKVAEDEAEAAAAAK	2	Unmodified	1485.7675	0.76748745	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	33.401	33.291	2	0.011165	28349	160511_QHF_FH_JSI12i_3	60.161	47.206			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11785000	0	11785000	0	0	0	0	0	0	0	0	0	11785000	0	11785000	24810	895	23511	155487;155488	210688;210689	210689			2	
IKVDEFVTHNLSFDEINK	2	Unmodified	2147.0899	0.089884225	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	77.526	77.393	3;4	1.9216E-23	67084	160511_QHF_FH_JSI12i_3	179.78	165.01			0.9974	1.0265	3.8604	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0124	0.94739	3.5758	2	0	Median	0.99089	1.0022	0.5459	2	0	Median	861180000	404270000	456910000	0	0	0	0	0	0	320650000	164910000	155740000	540540000	239360000	301170000	24811	1006	23512	155489;155490;155491;155492	210690;210691;210692;210693;210694;210695;210696	210694			7	
IKVDFVIPK	2	Unmodified	1057.6536	0.65356732	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	2	3	63.892	63.234	3	0.00076685	54507	160511_QHF_FH_JSI12i_3	67.726	46.855			0.91395	0.65738	31.717	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.46478	0.56038	30.298	2	2	Median	0.68045	0.62246	NaN	1	1	Median	0.97294	0.97596	NaN	1	1	Median	245460000	125160000	120300000	0	0	0	53635000	34889000	18746000	70220000	35237000	34983000	121600000	55030000	66574000	24812	543	23513	155493;155494;155495;155496;155497;155498;155499;155500;155501;155502	210697;210698;210699;210700;210701;210702;210703;210704;210705;210706	210706			10	
IKVEPASEK	2	Unmodified	999.56006	0.56006086	1509	P41162	ETV3	ETS translocation variant 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.8032	9.8978	3	0.023109	7232	160511_QHF_FH_JSI12i_3	29.473	0			0.74688	0.74675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74688	0.74675	NaN	1	0	Median	226970000	126860000	100110000	0	0	0	0	0	0	0	0	0	226970000	126860000	100110000	24813	1509	23514	155503	210707	210707			1	
IKVPVDWSK	2	Unmodified	1070.6124	0.61243078	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.028	50.18	3	9.8209E-06	41208	160511_QHF_FH_JSI9i_3	97.456	77.153			0.95457	0.8441	22.738	4	0	Median	1.0315	0.82399	NaN	1	0	Median	0.74398	0.84508	NaN	1	0	Median	0.8834	0.84313	NaN	1	0	Median	1.2852	1.3187	NaN	1	0	Median	936500000	467020000	469480000	156330000	81538000	74793000	161010000	101470000	59545000	187310000	94066000	93249000	431840000	189950000	241890000	24814	1039	23515	155504;155505;155506;155507	210708;210709;210710;210711;210712	210710			5	
IKWDEQTSNTK	2	Unmodified	1348.6623	0.6622941	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	19.788	19.801	3	0.0036599	16104	160511_QHF_FH_JSI12i_3	49.483	40.97			1.1222	1.1582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1222	1.1582	NaN	1	0	Median	98775000	41785000	56990000	0	0	0	0	0	0	0	0	0	98775000	41785000	56990000	24815	327	23516	155508	210713	210713			1	
IKWGDAGAEYVVESTGVFTTMEK	2	Unmodified	2517.2097	0.20974136	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	6	5.79		1	2						1	2		1	1	94.403	91.502	3	5.2512E-10	84629	160511_QHF_FH_JSI12i_3	98.121	90.409			0.55355	0.48021	48.485	3	2	Median	0.46363	0.40354	24.598	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88018	0.88375	NaN	1	0	Median	142910000	91271000	51639000	40242000	31731000	8511300	0	0	0	0	0	0	102670000	59540000	43128000	24816	812	23517	155509;155510;155511;155512	210714;210715;210716;210717;210718	210718			5	
IKYFEGVSPK	2	Acetyl (K)	1208.6441	0.64412484	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	62.818	52.006	2	0.0033603	28228	160513_QHF_FH_JSI11Kac_5	75.294	52.554			0.47567	0.50907	57.318	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83638	0.99264	31.405	2	0	Median	0.33977	0.33297	10.253	2	0	Median	0.47567	0.50907	NaN	1	0	Median	49702000	37586000	12115000	0	0	0	15307000	10622000	4684900	28687000	22349000	6337100	5707700	4614400	1093200	24817	2094	23518	155513;155514;155515;155516;155517	210719;210720;210721;210722;210723;210724;210725	210723	2197		7	
IKYPENFFLLR	1	Unmodified	1438.7973	0.79727144	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	1	2	2	79.826	77.368	3	8.1837E-06	64961	160511_QHF_FH_JSI9i_3	103.43	90.806			0.99039	0.8927	15.964	5	0	Median	0.99039	0.79123	NaN	1	0	Median	0.76559	0.8613	NaN	1	0	Median	1.083	1.0164	18.353	2	0	Median	1.0823	1.0787	NaN	1	0	Median	597980000	297330000	300660000	147410000	65287000	82125000	141860000	76324000	65536000	247390000	122670000	124720000	61318000	33044000	28274000	24818	1981;1461;1980	23519	155518;155519;155520;155521;155522;155523	210726;210727;210728;210729;210730;210731;210732;210733;210734;210735	210732			9	
ILAAALTQHNGDAAASLTVAEQYVSAFSK	1	Unmodified	2946.5087	0.50870058	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.638	85.917	4	0.0093909	49016	160513_QHF_FH_JSI10Kac_6	35.923	18.707			0.7985	0.9327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7985	0.9327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50017000	30453000	19564000	0	0	0	50017000	30453000	19564000	0	0	0	0	0	0	24819	5357	23520	155524	210736	210736			0	
ILAAETDRLSYVGNNFGTGALK	1	Unmodified	2309.2016	0.20155994	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			73.797	72.357	3	0.013813	60626	160511_QHF_FH_JSI10i_3	34.346	25.25			0.75021	0.86044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75021	0.86044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41367000	24361000	17006000	0	0	0	41367000	24361000	17006000	0	0	0	0	0	0	24820	4604	23521	155525	210737	210737			1	
ILAAIIMK	1	Unmodified	871.5565	0.55649581	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	3	3	4	2	67.105	62.347	2	0.0028862	55198	160511_QHF_FH_JSI11i_3	83.801	78.946			2.015	2.0395	108.48	12	11	Median	0.8666	0.7401	120.86	3	2	Median	0.74431	0.87667	153.65	3	3	Plateau	4.3595	4.1548	103.35	4	4	Linear	2.656	2.7896	33.156	2	2	Median	2666200000	1176000000	1490200000	597600000	264660000	332940000	495600000	248440000	247160000	1066400000	500640000	565750000	506590000	162230000	344360000	24821	1857	23522	155526;155527;155528;155529;155530;155531;155532;155533;155534;155535;155536;155537	210738;210739;210740;210741;210742;210743;210744;210745;210746;210747;210748;210749	210738			12	
ILAAIIMK	1	Oxidation (M)	887.55141	0.55141043	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				59.994	49.331	2	0.003616	26163	160513_QHF_FH_JSI9Kac_5	81.381	42.163			0.82503	0.70635	NaN	1	0	Median	0.82503	0.70635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20662000	9450500	11212000	20662000	9450500	11212000	0	0	0	0	0	0	0	0	0	24822	1857	23522	155538	210750	210750		1539	1	
ILADAAAEGVPVR	0	Unmodified	1280.7089	0.70885036	2876	Q5BJH7	YIF1B	Protein YIF1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.061	47.641	2	0.00069087	43042	160511_QHF_FH_JSI11i_1	83.397	56.724			0.78645	0.85869	6.8973	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74689	0.90161	NaN	1	1	Median	0.82811	0.81782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172330000	105180000	67148000	0	0	0	79599000	53590000	26010000	92732000	51594000	41138000	0	0	0	24823	2876	23523	155539;155540	210751;210752	210751			2	
ILADLEDYLNELWEDK	1	Unmodified	1977.9571	0.95713872	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		5								1	1	2	1	102.6	102.5	2;3	1.2098E-35	90294	160511_QHF_FH_JSI11i_2	243.88	221.68			1.1291	1.1406	25.921	5	2	Median	1.5342	1.3084	NaN	1	1	Median	0.8879	1.0829	NaN	1	0	Median	1.1515	1.1607	2.4685	2	1	Median	0.60362	0.67233	NaN	1	0	Median	349180000	162120000	187070000	37636000	13076000	24560000	37920000	19883000	18038000	245000000	112930000	132070000	28627000	16223000	12404000	24824	40	23524	155541;155542;155543;155544;155545	210753;210754;210755;210756	210755			4	
ILADLEEENRNLQAEYDR	0	Unmodified	2190.0553	0.055289633	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		59.188	59.188	3	0.031273	52567	160511_QHF_FH_JSI11i_3	34.094	20.262			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14918000	0	14918000	0	0	0	0	0	0	14918000	0	14918000	0	0	0	24825	1003	23525	155546	210757	210757			1	
ILADLEEENRNLQAEYDRLK	1	Unmodified	2431.2343	0.23431663	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		72.24	72.24	4	0.038679	64443	160511_QHF_FH_JSI11i_3	29.384	15.074			0.35421	0.33425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35421	0.33425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29240000	21375000	7864600	0	0	0	0	0	0	29240000	21375000	7864600	0	0	0	24826	1003	23526	155547	210758	210758			1	
ILADLNQQAPAPAPAERR	0	Unmodified	1930.0385	0.038457777	5547	Q9Y2Y9	KLF13	Krueppel-like factor 13	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			43.599	42.633	3	0.0069719	37570	160511_QHF_FH_JSI10i_2	42.647	24.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24827	5547	23527	155548	210759	210759			1	
ILADNPR	0	Unmodified	797.43955	0.43955179	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	12.315	11.904	2	0.010853	9718	160511_QHF_FH_JSI10i_2	73.039	16.529			0.83894	0.96796	7.6841	7	3	Median	0.99398	0.84888	NaN	1	0	Median	0.80153	0.96928	0.19227	2	1	Median	0.94781	0.95406	11.43	2	1	Median	0.82663	0.90857	9.0654	2	1	Median	4406500000	2285400000	2121200000	503980000	240520000	263460000	1084700000	546290000	538430000	1675300000	882090000	793240000	1142500000	616460000	526050000	24828	1525	23528	155549;155550;155551;155552;155553;155554;155555	210760;210761;210762;210763;210764;210765;210766	210766			7	
ILADQQDK	1	Unmodified	929.48181	0.48181054	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.83	5.84	3				1	2				1		3	2	11.316	7.4963	2	0.0030213	7061	160511_QHF_FH_JSI9i_1	75.692	44.403			1.3407	1.2283	91.48	6	1	Median	1.3477	1.0639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5965	1.5568	139.04	3	1	Median	1.0589	1.142	30.607	2	0	Median	2949800000	1256100000	1693700000	1063200000	438010000	625180000	0	0	0	827720000	329160000	498550000	1058900000	488920000	570000000	24829	5496	23529	155556;155557;155558;155559;155560;155561	210767;210768;210769;210770;210771;210772	210770			6	
ILAEADGLSTNHWLIGTDK	1	Unmodified	2053.048	0.04801941	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	77.195	76.267	3	0.00016206	66977	160511_QHF_FH_JSI11i_2	56.055	38.977			1.0824	1.1271	34.202	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4254	1.4355	NaN	1	0	Median	0.82199	0.88501	NaN	1	0	Median	126000000	66594000	59405000	0	0	0	0	0	0	69282000	31775000	37508000	56716000	34819000	21897000	24830	5338	23530	155562;155563	210773;210774;210775	210774			3	
ILAEGGGAK	1	Unmodified	814.45487	0.45486751	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.83	7	5	4			1	3			4	5	6	5	11.294	9.38	1;2	0.00083343	7562	160511_QHF_FH_JSI11i_2	73.26	31.758			0.99287	0.96832	13.207	20	0	Median	1.1634	0.9548	5.7171	4	0	Median	0.79017	0.91992	9.0732	5	0	Median	1.0234	0.98654	20.828	6	0	Median	0.98766	1.0546	10.288	5	0	Median	10462000000	5463400000	4999000000	2366500000	1190400000	1176100000	2702300000	1533400000	1168900000	2839200000	1368000000	1471200000	2554400000	1371600000	1182700000	24831	1658	23531	155564;155565;155566;155567;155568;155569;155570;155571;155572;155573;155574;155575;155576;155577;155578;155579;155580;155581;155582;155583	210776;210777;210778;210779;210780;210781;210782;210783;210784;210785;210786;210787;210788;210789;210790;210791;210792;210793;210794;210795;210796;210797;210798;210799;210800	210794			23	
ILAGDVETHAEMVHSAFQAQR	0	Unmodified	2309.1223	0.12226376	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	59.149	58.55	3;4	6.0063E-29	51911	160511_QHF_FH_JSI11i_3	177	167.62			1.0823	1.021	14.069	8	0	Median	1.1591	1.0017	NaN	1	0	Median	0.70827	0.85812	21.552	3	0	Plateau	1.1446	1.0854	5.9454	2	0	Median	0.98887	0.99336	17.173	2	0	Median	885680000	430190000	455490000	58617000	20994000	37623000	183170000	93801000	89369000	401270000	191940000	209330000	242620000	123450000	119170000	24832	1491	23532	155584;155585;155586;155587;155588;155589;155590;155591	210801;210802;210803;210804;210805;210806;210807;210808;210809;210810	210803			9	
ILAGILHLGNVGFTSR	0	Unmodified	1666.9519	0.9518746	5631	Q9Y4I1	MYO5A	Unconventional myosin-Va	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.608	76.015	3	0.002344	41908	160513_QHF_FH_JSI10Kac_6	61.226	51.477			3.0444	3.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0444	3.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80756000	22333000	58423000	0	0	0	80756000	22333000	58423000	0	0	0	0	0	0	24833	5631	23533	155592	210811	210811			1	
ILAGLGFDPEMQNRPTQK	1	Oxidation (M)	2030.0255	0.025509829	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		57.782	56.755	3	0.00040328	50279	160511_QHF_FH_JSI11i_3	60.768	44.826			1.0185	1.1662	1.7678	3	0	Plateau	1.4165	1.135	NaN	1	0	Median	1.0021	1.1662	NaN	1	0	Median	1.2397	1.1733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	320430000	151660000	168780000	92906000	44607000	48299000	120940000	62636000	58308000	106580000	44414000	62171000	0	0	0	24834	3634	23534	155593;155594;155595	210812;210813	210812		2275	2	
ILAGLGFDPEMQNRPTQK	1	Unmodified	2014.0306	0.030595207	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		64.317	63.253	2;3	1.8526E-08	53141	160511_QHF_FH_JSI10i_3	127.22	112.06			1.0519	0.9825	8.5027	5	1	Median	1.176	0.98356	12.959	2	0	Median	0.81797	0.96579	2.4255	2	0	Median	1.0748	1.0971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1543800000	831730000	712080000	671220000	331260000	339970000	774830000	448410000	326430000	97750000	52065000	45685000	0	0	0	24835	3634	23534	155596;155597;155598;155599;155600;155601	210814;210815;210816;210817;210818;210819;210820;210821;210822;210823;210824;210825;210826	210817			13	
ILAHLTGTEFMQDPDEEHLK	1	Unmodified	2323.1154	0.11544705	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.904	63.618	4	0.0027129	54798	160511_QHF_FH_JSI12i_3	44.816	40.464			0.54229	0.54419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54229	0.54419	NaN	1	1	Median	161480000	94865000	66616000	0	0	0	0	0	0	0	0	0	161480000	94865000	66616000	24836	4937	23535	155602	210827	210827			1	
ILAHLWHLGYSPEDIIGNIFR	0	Unmodified	2463.3063	0.30629978	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.933	87.526	3;4	4.6188E-89	51597	160513_QHF_FH_JSI10Kac_6	221.91	205.4			1.0623	1.0294	13.988	8	0	Median	1.3021	1.1044	6.9064	2	0	Median	0.71131	0.84776	3.3797	2	0	Median	1.0623	0.99662	1.5302	2	0	Median	1.1084	1.1753	9.2729	2	0	Median	4177600000	2148300000	2029300000	729480000	313760000	415720000	2293700000	1273400000	1020300000	581130000	269790000	311340000	573290000	291350000	281940000	24837	1429	23536	155603;155604;155605;155606;155607;155608;155609;155610	210828;210829;210830;210831;210832;210833;210834;210835;210836	210836			9	
ILAHNNFVGR	0	Unmodified	1139.62	0.61997578	132;5153	O00425;Q9NZI8	IGF2BP3;IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6.25	5.63			6						2	3	2	2	1	27.282	24.258	2;3	4.7483E-08	19684	160511_QHF_FH_JSI9i_3	93.098	68.943			0.8549	0.81594	26.744	7	1	Median	0.84468	0.69746	26.081	3	0	Median	0.99271	1.1426	20.123	2	1	Median	0.8772	0.81594	NaN	1	0	Median	0.70977	0.74832	NaN	1	0	Median	719070000	366730000	352340000	382080000	179540000	202540000	185990000	104670000	81319000	102350000	61395000	40956000	48648000	21126000	27521000	24838	132;5153	23537	155611;155612;155613;155614;155615;155616;155617;155618	210837;210838;210839;210840;210841;210842;210843	210840			7	
ILAIGLINEALDEGDAQK	1	Unmodified	1882.0048	0.004757612	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	3.4	2	8	5						1	2	3	6	5	100.79	100.12	2;3	7.9554E-266	90338	160511_QHF_FH_JSI11i_3	354.97	332.92			0.945	0.96937	22.709	16	1	Median	1.2135	1.0423	4.9831	2	0	Median	0.6398	0.79604	14.945	3	0	Plateau	0.945	0.93391	30.816	6	1	Median	0.9562	0.98216	24.15	5	0	Median	8104700000	4033500000	4071200000	1037900000	439520000	598370000	1293400000	777230000	516180000	2454100000	1243800000	1210300000	3319300000	1573000000	1746300000	24839	1600	23538	155619;155620;155621;155622;155623;155624;155625;155626;155627;155628;155629;155630;155631;155632;155633;155634	210844;210845;210846;210847;210848;210849;210850;210851;210852;210853;210854;210855;210856;210857;210858;210859;210860;210861;210862;210863;210864;210865;210866;210867	210844			21	
ILAIVGTAESNSEHPLGTAITK	1	Unmodified	2221.1954	0.19541193	2218	Q04656	ATP7A	Copper-transporting ATPase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.404	69.255	3	2.8702E-06	61660	160511_QHF_FH_JSI11i_3	87.156	73.729			4.0513	3.9723	32.226	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.2565	4.9889	NaN	1	1	Median	3.1224	3.1629	NaN	1	1	Median	53473000	22118000	31355000	0	0	0	0	0	0	24814000	9057700	15757000	28658000	13060000	15598000	24840	2218	23539	155635;155636	210868;210869	210868			2	
ILALCMGNHELYMR	0	Unmodified	1719.8259	0.82588751	1270;1426	P35241;P26038	RDX;MSN	Radixin;Moesin	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							1	3	3	4	70.964	70.296	2;3	1.7505E-05	60800	160511_QHF_FH_JSI12i_3	137.17	111.73			0.9689	0.96375	30.285	11	6	Median	1.3963	1.1743	NaN	1	0	Median	0.98125	1.1574	17.337	3	3	Plateau	0.79916	0.76876	2.9276	3	1	Median	1.3821	1.5258	25.283	4	2	Median	878760000	444340000	434420000	22540000	10610000	11930000	123030000	62957000	60070000	239340000	143310000	96034000	493850000	227460000	266390000	24841	1426;1270	23540	155637;155638;155639;155640;155641;155642;155643;155644;155645;155646;155647	210870;210871;210872;210873;210874;210875;210876;210877;210878;210879;210880	210880			11	
ILALCMGNHELYMR	0	Oxidation (M)	1735.8208	0.82080213	1270;1426	P35241;P26038	RDX;MSN	Radixin;Moesin	no	no	0	0	1	0	By MS/MS		By matching	By MS/MS	16	0									3	1		1	1	70.237	60.96	3	0.0017454	31992	160513_QHF_FH_JSI12Kac_6	52.527	47.248			1.2028	1.2855	12.966	3	0	Plateau	1.1629	0.99736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1705	1.1417	NaN	1	0	Median	1.2106	1.2925	NaN	1	0	Median	96410000	48926000	47484000	20542000	11552000	8990200	0	0	0	31871000	18885000	12986000	43996000	18488000	25508000	24842	1426;1270	23540	155648;155649;155650	210881;210882	210882		900	2	
ILALDCGLK	1	Unmodified	1001.558	0.55795237	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	55.349	54.409	2	0.058527	47093	160511_QHF_FH_JSI11i_2	39.022	22.246			1.0886	1.1384	22.693	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97091	0.96965	NaN	1	0	Median	1.2205	1.3366	NaN	1	0	Median	73530000	36051000	37479000	0	0	0	0	0	0	51180000	28010000	23170000	22350000	8040900	14309000	24843	1296	23541	155651;155652	210883	210883			1	
ILALLDALSTVHSQK	1	Unmodified	1607.9247	0.9246568	2566	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	91.057	90.504	3	0.00021348	80527	160511_QHF_FH_JSI11i_3	80.632	73.267			1.9341	1.7308	62.303	4	4	Linear	4.8229	4.03	NaN	1	1	Median	8.9399	10.364	NaN	1	1	Median	2.7403	2.5531	NaN	1	1	Median	2.8505	3.0625	NaN	1	1	Median	82364000	22035000	60328000	14220000	2759100	11460000	12801000	2842000	9958700	35535000	10751000	24784000	19808000	5683000	14125000	24844	2566	23542	155653;155654;155655;155656	210884;210885;210886;210887;210888;210889	210884			6	
ILALVPETIHDELQQSFQK	1	Unmodified	2208.179	0.17903358	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	97.581	97.398	3	9.1003E-05	85281	160511_QHF_FH_JSI9i_2	77.39	69			0.73796	0.67144	18.331	6	6	Median	0.73796	0.63009	3.2337	2	2	Median	0.66691	0.80629	31.927	2	2	Median	0.76861	0.76061	NaN	1	1	Median	0.64159	0.69934	NaN	1	1	Median	277560000	175020000	102540000	84821000	53916000	30905000	105680000	63860000	41823000	47774000	30978000	16796000	39287000	26266000	13021000	24845	1669	23543	155657;155658;155659;155660;155661;155662	210890;210891;210892;210893;210894;210895;210896	210891			7	
ILAMNHLK	1	Unmodified	938.53716	0.53715735	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.392	26.392	3	0.033332	22589	160511_QHF_FH_JSI11i_3	31.934	21.061			4.4622	4.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4622	4.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50682000	11412000	39269000	0	0	0	0	0	0	50682000	11412000	39269000	0	0	0	24846	4733	23544	155663	210897;210898	210897			2	
ILAMSKSR	1	Oxidation (M)	920.51134	0.51133653	466	O75031	HSF2BP	Heat shock factor 2-binding protein	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				14.379	13.398	3	0.013336	10559	160511_QHF_FH_JSI9i_3	57.177	25.948			3.7954	3.0421	NaN	1	1	Median	3.7954	3.0421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173870000	39454000	134420000	173870000	39454000	134420000	0	0	0	0	0	0	0	0	0	24847	466	23545	155664	210899	210899		182	1	
ILAPYLEMK	1	Unmodified	1076.594	0.59400353	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	67.491	66.593	2	0.008244	58123	160511_QHF_FH_JSI11i_2	52.482	33.699			1.1454	1.1558	19.705	3	1	Median	NaN	NaN	NaN	0	0	Median	0.74811	0.91217	NaN	1	0	Median	1.1454	1.1558	NaN	1	0	Median	1.2487	1.3489	NaN	1	1	Median	266830000	121780000	145050000	0	0	0	62415000	39298000	23117000	123130000	47915000	75214000	81284000	34565000	46720000	24848	4076	23546	155665;155666;155667	210900;210901	210901			2	
ILAQATSDLVNAIK	1	Unmodified	1455.8297	0.82969378	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.691	9	6	2							4	4	6	3	74.262	73.638	2;3	7.6435E-10	63558	160511_QHF_FH_JSI12i_2	165.63	126.61			1.5603	1.4602	52.216	17	13	Median	1.4628	1.2609	57.973	4	3	Median	1.0758	1.2596	43.758	4	2	Median	2.1762	2.1096	66.551	6	6	Median	1.6981	1.6718	47.318	3	2	Median	1890700000	888900000	1001800000	336160000	147310000	188850000	522330000	269360000	252970000	755910000	341410000	414510000	276260000	130830000	145430000	24849	5616	23547	155668;155669;155670;155671;155672;155673;155674;155675;155676;155677;155678;155679;155680;155681;155682;155683;155684	210902;210903;210904;210905;210906;210907;210908;210909;210910;210911;210912;210913;210914;210915;210916;210917;210918;210919;210920	210906			19	
ILAQITGTEHLK	1	Unmodified	1322.7558	0.75580056	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	42.462	41.638	2;3	1.4001E-05	35765	160511_QHF_FH_JSI12i_2	107.09	91.228			0.74057	0.77806	61.224	4	4	Median	NaN	NaN	NaN	0	0	Median	0.4942	0.61431	NaN	1	1	Median	1.3064	1.2918	85.863	2	2	Median	0.77679	0.86006	NaN	1	1	Median	418140000	222430000	195710000	0	0	0	168260000	101980000	66279000	72921000	37318000	35603000	176960000	83128000	93832000	24850	4108	23548	155685;155686;155687;155688	210921;210922;210923;210924	210921			4	
ILAQSASVEEVFR	0	Unmodified	1447.7671	0.76709352	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			73.863	63.347	2	0.050828	31677	160513_QHF_FH_JSI10Kac_5	35.959	20.388			0.70915	0.83576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70915	0.83576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1770100	1246200	523990	0	0	0	1770100	1246200	523990	0	0	0	0	0	0	24851	2691	23549	155689	210925	210925			1	
ILAQTAAHVAGAAYYYQR	0	Unmodified	1966.0061	0.006095016	5638	Q9Y4U1	MMACHC	Methylmalonic aciduria and homocystinuria type C protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	61.902	52.35	3	1.7059E-12	27779	160513_QHF_FH_JSI9Kac_6	131.11	121.06			1.3769	1.1862	36.253	3	1	Plateau	1.3769	1.1862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5376	1.5065	NaN	1	1	Median	2.281	2.4183	NaN	1	0	Median	66480000	25798000	40681000	38843000	14432000	24411000	0	0	0	20836000	8360300	12476000	6800800	3005600	3795200	24852	5638	23550	155690;155691;155692	210926;210927	210927			2	
ILAQVVGDVDTSLPR	0	Unmodified	1581.8726	0.87262123	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								2	4	4	3	72.83	72.274	2;3	1.6548E-06	62325	160511_QHF_FH_JSI12i_2	127.17	90.749			0.7067	0.79692	25.895	12	8	Median	1.0724	0.91079	NaN	1	0	Median	0.66914	0.78934	19.766	4	2	Median	0.96816	0.95723	37.655	4	3	Median	0.6059	0.62862	15.808	3	3	Plateau	582340000	315120000	267220000	35663000	11407000	24256000	219480000	130130000	89343000	179260000	83350000	95906000	147940000	90227000	57714000	24853	2609	23551	155693;155694;155695;155696;155697;155698;155699;155700;155701;155702;155703;155704;155705	210928;210929;210930;210931;210932;210933;210934;210935;210936;210937	210931			10	
ILASLVTQFNSGLK	1	Unmodified	1489.8504	0.85042922	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.136	81.927	2	0.00022249	71187	160511_QHF_FH_JSI12i_3	87.713	62.496			0.80574	0.84156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80574	0.84156	NaN	1	0	Median	38066000	20948000	17118000	0	0	0	0	0	0	0	0	0	38066000	20948000	17118000	24854	3888	23552	155706	210938	210938			1	
ILASPVELALVVMK	1	Unmodified	1481.8891	0.88912291	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							3	3	2	1	102.4	102.29	2	1.6203E-17	90886	160511_QHF_FH_JSI10i_2	139.86	100.84			0.88315	0.96716	17.778	5	5	Median	0.88315	0.7532	NaN	1	1	Median	0.73635	0.87777	13.715	2	2	Median	1.021	1.0378	NaN	1	1	Median	1.0635	1.1483	NaN	1	1	Median	915310000	498490000	416820000	148960000	76709000	72253000	259980000	166730000	93253000	273150000	142560000	130590000	233210000	112490000	120730000	24855	5135	23553	155707;155708;155709;155710;155711;155712;155713;155714;155715	210939;210940;210941;210942;210943;210944;210945;210946;210947	210947			9	
ILASTQFEPTAAR	0	Unmodified	1403.7409	0.74087877	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		47.785	47.264	2	4.0909E-05	40737	160511_QHF_FH_JSI11i_2	114.89	87.59			1.1263	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1263	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88307000	57805000	30502000	0	0	0	0	0	0	88307000	57805000	30502000	0	0	0	24856	5142	23554	155716;155717	210948;210949	210949			2	
ILATGANVILTTGGIDDMCLK	1	Unmodified	2175.1279	0.12792599	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	96.595	96.272	3	3.9278E-06	82738	160511_QHF_FH_JSI12i_2	89.028	73.774			1.1271	1.2026	21.164	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1271	1.2026	21.164	2	2	Median	38233000	19879000	18354000	0	0	0	0	0	0	0	0	0	38233000	19879000	18354000	24857	1132	23555	155718;155719	210950;210951;210952	210951			3	
ILATPPQEDAPSVDIANIR	0	Unmodified	2019.0637	0.063669474	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.775	8	9	6							6	6	7	4	75.051	74.298	2;3	9.4259E-83	66071	160511_QHF_FH_JSI9i_1	295.86	269.08			1.0731	1.1418	13.4	22	5	Median	1.386	1.1696	11.181	6	1	Median	1.0201	1.2217	10.077	6	1	Median	1.1103	1.0906	18.313	6	2	Median	0.95666	1.0279	6.6387	4	1	Median	26559000000	11580000000	14979000000	6829600000	2185100000	4644500000	7325900000	3333300000	3992600000	6482800000	2975300000	3507600000	5920700000	3086600000	2834100000	24858	1322	23556	155720;155721;155722;155723;155724;155725;155726;155727;155728;155729;155730;155731;155732;155733;155734;155735;155736;155737;155738;155739;155740;155741;155742	210953;210954;210955;210956;210957;210958;210959;210960;210961;210962;210963;210964;210965;210966;210967;210968;210969;210970;210971;210972;210973;210974;210975;210976;210977;210978;210979;210980;210981;210982;210983;210984;210985;210986;210987;210988;210989;210990;210991	210980			39	
ILATPPQEDAPSVDIANIRMPSLPSYK	1	Unmodified	2922.5161	0.51609414	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			97.98	97.782	3	0.03614	86414	160511_QHF_FH_JSI10i_2	24.637	18.203			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19151000	19151000	0	0	0	0	19151000	19151000	0	0	0	0	0	0	0	24859	1322	23557	155743;155744	210992;210993	210993			2	
ILATTPSAVFR	0	Unmodified	1174.671	0.67100829	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	58.227	57.293	2	0.0035406	50331	160511_QHF_FH_JSI9i_2	58.433	30.035			0.85017	0.89892	9.5951	4	3	Median	1.1439	0.96811	NaN	1	1	Median	0.63195	0.78555	NaN	1	1	Median	0.85471	0.85566	NaN	1	1	Median	0.84565	0.94438	NaN	1	0	Median	365010000	196420000	168590000	70541000	31793000	38749000	98732000	61196000	37536000	105780000	54498000	51285000	89949000	48930000	41019000	24860	4956	23558	155745;155746;155747;155748;155749	210994;210995;210996;210997;210998	210996			5	
ILAVCHGVMYK	1	Unmodified	1289.6624	0.66243422	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		39.761	39.761	3	0.0010249	34996	160511_QHF_FH_JSI11i_3	48.998	40.485			0.92533	0.83931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92533	0.83931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34822000	14902000	19920000	0	0	0	0	0	0	34822000	14902000	19920000	0	0	0	24861	5281	23559	155750	210999	210999			1	
ILAVNGQDVR	0	Unmodified	1083.6037	0.60365701	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.645	31.322	2	0.011796	26518	160511_QHF_FH_JSI12i_2	46.129	4.0196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24862	2506	23560	155751	211000	211000			1	
ILAYTEGLHGK	1	Unmodified	1200.6503	0.65027285	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		33.117	33.117	3	0.0075635	28794	160511_QHF_FH_JSI11i_3	46.592	33.976			1.5554	1.4593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5554	1.4593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45520000	19473000	26047000	0	0	0	0	0	0	45520000	19473000	26047000	0	0	0	24863	1718	23561	155752	211001	211001			1	
ILCDVPCSGDGTMR	0	Unmodified	1579.6793	0.67928285	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			41.107	40.705	2	0.0078168	36536	160511_QHF_FH_JSI10i_1	49.5	42.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24864	2282	23562	155753	211002	211002			1	
ILCDVPCSGDGTMRK	1	Unmodified	1707.7742	0.77424587	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	33.112	33.065	3	0.0015175	27935	160511_QHF_FH_JSI12i_3	60.474	50.278			1.2613	1.2555	24.163	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1371	1.0583	NaN	1	1	Median	1.3991	1.4894	NaN	1	1	Median	115840000	48753000	67083000	0	0	0	0	0	0	67526000	29890000	37636000	48311000	18864000	29447000	24865	2282	23563	155754;155755;155756	211003;211004;211005	211005			3	
ILCFYGPPGVGK	1	Unmodified	1306.6744	0.67437911	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			69.331	67.859	2	0.00010388	56850	160511_QHF_FH_JSI10i_3	103.56	82.693			0.94524	1.088	19.609	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94524	1.088	19.609	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72272000	43295000	28976000	0	0	0	72272000	43295000	28976000	0	0	0	0	0	0	24866	1459	23564	155757;155758	211006;211007	211007			2	
ILCHKFMR	1	Acetyl (K)	1145.5838	0.58378997	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		42.711	33.114	3	0.011219	18129	160513_QHF_FH_JSI11Kac_6	45.972	39.74			0.26042	0.25517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26042	0.25517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20829000	17222000	3606900	0	0	0	0	0	0	20829000	17222000	3606900	0	0	0	24867	1905	23565	155759	211008	211008	1902		1	
ILDAAGANLK	1	Unmodified	984.5604	0.56039521	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		33.544	32.8	2	0.0089908	28805	160511_QHF_FH_JSI10i_2	59.245	35.09			0.12565	0.1532	65.891	3	3	Median	0.18697	0.16206	NaN	1	1	Median	0.12565	0.1532	NaN	1	1	Median	0.051938	0.050383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1632400000	1570700000	61687000	269770000	243130000	26637000	161080000	152800000	8280600	1201600000	1174800000	26769000	0	0	0	24868	5249	23566	155760;155761;155762	211009;211010;211011;211012	211012			4	
ILDAVVAQEPLHR	0	Unmodified	1459.8147	0.81471242	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.44	1	7	4				1	3		3	3	7	3	52.913	49.311	2;3	1.5246E-08	42566	160511_QHF_FH_JSI11i_2	128.68	108.57			0.99919	1.0106	41.292	14	9	Median	1.043	0.88955	48.349	3	3	Plateau	1.0709	1.3106	68.667	3	3	Plateau	0.95726	0.99009	19.974	5	1	Median	0.95457	1.0706	36.508	3	2	Median	2484000000	1125400000	1358600000	343670000	136230000	207440000	642990000	266840000	376150000	885640000	447150000	438490000	611670000	275140000	336520000	24869	2609	23567	155763;155764;155765;155766;155767;155768;155769;155770;155771;155772;155773;155774;155775;155776;155777;155778	211013;211014;211015;211016;211017;211018;211019;211020;211021;211022;211023;211024;211025;211026;211027;211028;211029;211030;211031	211023			19	
ILDDDTIITTLENLK	1	Unmodified	1715.9193	0.91929665	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.25	0.433	3	1								1	1	1	1	101.83	101.74	2;3	7.6956E-17	92527	160511_QHF_FH_JSI10i_1	125.82	83.817			0.66075	0.62974	15.808	3	0	Plateau	0.56803	0.49194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67041	0.62974	NaN	1	0	Median	0.6374	0.66037	NaN	1	0	Median	156440000	87422000	69013000	34079000	17034000	17046000	0	0	0	63612000	35639000	27973000	58744000	34749000	23994000	24870	2517	23568	155779;155780;155781;155782	211032;211033;211034	211033			2	
ILDDDTIITTLENLKR	1	Unmodified	1872.0204	0.020407676	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	100.94	100.95	3	1.1695E-11	87559	160511_QHF_FH_JSI12i_3	106.82	90.681			1.3231	1.3092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3231	1.3092	NaN	1	0	Median	216330000	81074000	135260000	0	0	0	0	0	0	0	0	0	216330000	81074000	135260000	24871	2517	23569	155783;155784	211035;211036	211036			2	
ILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQK	1	Unmodified	3607.8807	0.88074966	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4		2	2	1	104.48	98.404	3;4	2.9913E-269	58288	160513_QHF_FH_JSI10Kac_6	325.42	299.92			0.84589	0.9147	18.755	4	1	Median	NaN	NaN	NaN	0	0	Median	0.84181	1.0122	18.517	2	0	Median	0.84904	0.83029	17.891	2	1	Median	NaN	NaN	NaN	0	0	Median	445630000	240310000	205320000	0	0	0	388000000	212260000	175750000	43134000	28055000	15079000	14499000	0	14499000	24872	3862	23570	155785;155786;155787;155788;155789	211037;211038;211039;211040;211041;211042;211043	211043			7	
ILDDSDSNLSVVK	1	Unmodified	1403.7144	0.71438925	31	A6NKT7;Q7Z3J3	RGPD3;RGPD4	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.028	45.402	2	3.3493E-06	40955	160511_QHF_FH_JSI11i_1	122.69	0			0.93582	0.99822	59.299	5	4	Median	0.75778	0.61221	NaN	1	1	Median	0.90274	1.076	83.615	2	2	Median	2.0341	1.9993	NaN	1	1	Median	0.93582	0.99822	NaN	1	0	Median	1056800000	521400000	535440000	180110000	92275000	87834000	376930000	201400000	175530000	243020000	97576000	145440000	256790000	130150000	126640000	24873	31	23571	155790;155791;155792;155793;155794	211044;211045;211046;211047;211048;211049	211044			6	
ILDDWGETCK	1	Unmodified	1235.5492	0.54923818	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.896	41.269	2	0.018049	37505	160511_QHF_FH_JSI12i_1	44.318	31.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24874	1849	23572	155795	211050	211050			1	
ILDEIEEHNIK	1	Unmodified	1351.6983	0.69834526	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								2	4	2	3	38.17	37.178	2;3	1.525E-05	32371	160511_QHF_FH_JSI9i_2	101.39	91.594			1.3341	1.4679	73.388	11	9	Median	2.0916	1.8099	29.615	2	2	Median	0.96219	1.1835	74.101	4	4	Median	3.8134	3.8308	4.9198	2	1	Median	0.71986	0.82687	43.597	3	2	Median	1804800000	843210000	961610000	237190000	93413000	143780000	744210000	407800000	336410000	424220000	134360000	289860000	399200000	207630000	191560000	24875	2603	23573	155796;155797;155798;155799;155800;155801;155802;155803;155804;155805;155806	211051;211052;211053;211054;211055;211056;211057;211058;211059;211060;211061;211062	211054			12	
ILDGMFAICGVSDSK	1	Unmodified	1611.7637	0.7636644	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.412	80.26	2	0.00072444	69348	160511_QHF_FH_JSI12i_2	85.845	50.958			2.9698	3.1904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9698	3.1904	NaN	1	1	Median	12728000	2548300	10180000	0	0	0	0	0	0	0	0	0	12728000	2548300	10180000	24876	1012	23574	155807	211063	211063			1	
ILDHQQQMTVLDQTK	1	Unmodified	1796.9091	0.90908309	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.36	40.894	3	0.0006536	35115	160511_QHF_FH_JSI11i_2	65.716	47.352			0.75702	0.7708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75702	0.7708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40393000	23519000	16874000	0	0	0	0	0	0	40393000	23519000	16874000	0	0	0	24877	5628	23575	155808	211064	211064			1	
ILDIDNVDLAMGK	1	Unmodified	1415.733	0.7330162	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.73	80.26	2	1.1027E-07	71387	160511_QHF_FH_JSI9i_1	139.86	110.11			0.74416	0.69779	22.204	4	2	Median	0.71155	0.58135	NaN	1	0	Median	0.8237	0.95871	NaN	1	1	Median	0.77825	0.76768	NaN	1	0	Median	0.60604	0.63427	NaN	1	1	Median	528950000	318140000	210810000	124770000	83754000	41018000	137830000	67951000	69877000	103520000	58034000	45490000	162830000	108400000	54421000	24878	346	23576	155809;155810;155811;155812	211065;211066;211067;211068;211069;211070	211069			6	
ILDIGLAYINHLVER	0	Unmodified	1737.9778	0.977755	1677	P49754	VPS41	Vacuolar protein sorting-associated protein 41 homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	100.88	100.83	3	9.206E-06	87451	160511_QHF_FH_JSI12i_3	120.66	107.83			1.0134	1.0874	20.082	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1138	1.3199	NaN	1	0	Median	0.93134	0.88337	NaN	1	0	Median	1.0134	1.0874	NaN	1	0	Median	93867000	53812000	40055000	0	0	0	19177000	8596100	10581000	26893000	17920000	8972700	47797000	27295000	20502000	24879	1677	23577	155813;155814;155815	211071;211072;211073	211073			3	
ILDLGITGPEGHVLSRPEEVEAEAVNR	0	Unmodified	2899.5039	0.50394955	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	77.913	77.572	3;4	1.1194E-17	67356	160511_QHF_FH_JSI12i_3	104.3	92.332			0.95507	1.0029	6.2716	5	0	Median	NaN	NaN	NaN	0	0	Median	0.91433	1.0994	4.8166	2	0	Median	1.0559	0.99563	1.0244	2	0	Median	0.95507	0.9794	NaN	1	0	Median	579770000	308110000	271670000	0	0	0	145400000	76067000	69331000	334450000	175790000	158650000	99928000	56245000	43683000	24880	2739	23578	155816;155817;155818;155819;155820	211074;211075;211076;211077;211078;211079;211080	211080			7	
ILDLIKK	2	Unmodified	841.56369	0.56368968	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			39.557	38.066	3	0.02819	31767	160511_QHF_FH_JSI10i_3	29.149	11.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24881	1271	23579	155821	211081	211081			1	
ILDNTSEPQPGEAR	0	Unmodified	1525.7372	0.73724996	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				2	3	2	3	27.584	24.317	2	3.4335E-06	21455	160511_QHF_FH_JSI10i_1	132.69	110.6			1.0207	1.0148	10.88	9	5	Median	1.1587	0.96637	6.9143	2	2	Median	0.89186	1.0606	13.379	3	2	Median	1.0909	1.0562	10.263	2	0	Median	1.0175	1.0956	16.19	2	1	Median	1013200000	502130000	511070000	294700000	128870000	165830000	356780000	192550000	164230000	152410000	77989000	74421000	209310000	102720000	106590000	24882	1704	23580	155822;155823;155824;155825;155826;155827;155828;155829;155830;155831	211082;211083;211084;211085;211086;211087;211088;211089;211090;211091;211092	211087			11	
ILDPEGLALGAVIASSK	1	Unmodified	1652.9349	0.93488713	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	101	100.88	2;3	8.1161E-06	88542	160511_QHF_FH_JSI11i_2	88.992	43.735			0.803	0.8661	120.42	5	2	Median	NaN	NaN	NaN	0	0	Median	2.6626	3.2849	188.53	2	1	Median	0.94981	0.94284	22.98	2	0	Median	0.6297	0.72171	NaN	1	1	Median	550220000	120210000	430010000	0	0	0	404740000	42618000	362120000	109820000	59227000	50592000	35659000	18367000	17293000	24883	3460	23581	155832;155833;155834;155835;155836	211093;211094;211095;211096;211097	211094			5	
ILDQGEDFPASEMTR	0	Oxidation (M)	1723.7723	0.77231483	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.86	43.085	2	4.1153E-07	38341	160511_QHF_FH_JSI9i_1	139.78	101.21			1.0746	0.99818	12.206	5	0	Median	1.3039	1.0868	15.953	2	0	Median	0.76706	0.88524	NaN	1	0	Median	1.0265	0.99818	NaN	1	0	Median	1.0746	1.1012	NaN	1	0	Median	358760000	170800000	187960000	100390000	43360000	57026000	86064000	52239000	33825000	74778000	37762000	37016000	97536000	37438000	60098000	24884	1332	23582	155837;155838;155839;155840;155841	211098;211099;211100;211101;211102;211103;211104;211105	211105		974	8	
ILDQGEDFPASEMTR	0	Unmodified	1707.7774	0.77740021	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								3	3	5	2	57.445	56.753	2;3	9.6539E-31	51643	160511_QHF_FH_JSI12i_1	196.57	184.71			1.1189	1.0767	10.61	11	1	Median	1.2216	0.98948	6.9545	3	0	Median	0.85673	1.013	3.2599	3	0	Plateau	1.2993	1.2461	7.3637	3	1	Median	1.0923	1.1477	1.6796	2	0	Median	3920200000	1882000000	2038200000	980910000	440400000	540510000	1029300000	565150000	464190000	1133300000	523980000	609340000	776620000	352420000	424190000	24885	1332	23582	155842;155843;155844;155845;155846;155847;155848;155849;155850;155851;155852;155853;155854	211106;211107;211108;211109;211110;211111;211112;211113;211114;211115;211116;211117;211118;211119;211120;211121;211122;211123;211124;211125;211126;211127;211128;211129;211130;211131	211112			26	
ILDQSEAEK	1	Unmodified	1031.5135	0.5135046	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	13.796	13.382	2	0.0010634	10803	160511_QHF_FH_JSI11i_1	74.376	42.441			1.0011	1.048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0011	1.048	NaN	1	1	Median	233710000	149950000	83761000	0	0	0	0	0	0	0	0	0	233710000	149950000	83761000	24886	2573	23583	155855;155856	211132;211133	211132			2	
ILDSAEFIK	1	Unmodified	1034.5648	0.56481189	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	56.393	55.528	2	0.0035082	49925	160511_QHF_FH_JSI10i_1	60.019	22.461			1.0055	1.2158	4.6265	5	0	Linear	1.4312	1.1943	2.5214	2	0	Median	1.0583	1.2326	NaN	1	0	Median	1.332	1.2702	NaN	1	0	Median	1.0268	1.1269	NaN	1	0	Median	775830000	333310000	442510000	221150000	105800000	115350000	155240000	57682000	97557000	153690000	76354000	77331000	245750000	93472000	152280000	24887	2087	23584	155857;155858;155859;155860;155861	211134;211135;211136;211137;211138;211139;211140;211141	211136			8	
ILDSFAAAPVPTTTLVLK	1	Unmodified	1856.0659	0.065901306	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		96.341	96.357	2	7.6301E-07	87387	160511_QHF_FH_JSI10i_1	115.14	106.13			0.74914	0.81647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74914	0.81647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11471000	8087100	3384100	0	0	0	11471000	8087100	3384100	0	0	0	0	0	0	24888	1141	23585	155862;155863;155864	211142;211143;211144	211143			3	
ILDSVGIEADDDR	0	Unmodified	1416.6733	0.67325272	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	46.419	45.747	2	1.2773E-05	41336	160511_QHF_FH_JSI11i_1	123.67	102.89			0.86824	0.97986	18.56	5	2	Linear	1.0892	0.89193	NaN	1	0	Median	0.8178	0.97986	NaN	1	0	Median	0.98301	0.95514	NaN	1	0	Median	1.2461	1.2752	15.054	2	2	Median	501580000	266590000	235000000	72475000	37556000	34919000	128420000	77303000	51114000	125310000	64176000	61137000	175380000	87553000	87828000	24889	836	23586	155865;155866;155867;155868;155869	211145;211146;211147;211148;211149;211150;211151;211152	211146			8	
ILDSVGIEADDDRLNK	1	Unmodified	1771.8952	0.89520716	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.03	0.782	9	12	10							9	7	8	7	50.783	49.908	2;3	1.6494E-233	43251	160511_QHF_FH_JSI11i_2	379.76	331.32			0.96107	0.93294	18.217	27	7	Median	1.0703	0.88094	14.497	8	3	Median	0.85782	0.98405	22.886	6	2	Median	0.97501	0.93766	9.5651	6	0	Median	0.96107	1.0122	20.328	7	2	Median	43716000000	20860000000	22856000000	6121700000	2677800000	3443900000	10821000000	5116400000	5704100000	11050000000	4679300000	6371000000	15724000000	8386700000	7336800000	24890	836	23587	155870;155871;155872;155873;155874;155875;155876;155877;155878;155879;155880;155881;155882;155883;155884;155885;155886;155887;155888;155889;155890;155891;155892;155893;155894;155895;155896;155897;155898;155899;155900	211153;211154;211155;211156;211157;211158;211159;211160;211161;211162;211163;211164;211165;211166;211167;211168;211169;211170;211171;211172;211173;211174;211175;211176;211177;211178;211179;211180;211181;211182;211183;211184;211185;211186;211187;211188;211189;211190;211191;211192;211193;211194;211195;211196;211197;211198;211199;211200;211201;211202;211203;211204;211205;211206;211207;211208;211209;211210;211211;211212;211213;211214;211215;211216;211217;211218;211219;211220;211221;211222;211223;211224;211225;211226;211227;211228;211229;211230;211231;211232;211233;211234;211235;211236;211237;211238;211239;211240	211225			88	
ILDTLGLLR	0	Unmodified	1012.6281	0.62808085	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	76.297	75.425	2	0.057187	65209	160511_QHF_FH_JSI12i_2	34.253	14.466			1.0054	1.0568	6.8775	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78573	0.96006	NaN	1	0	Median	1.053	1.0568	NaN	1	0	Median	1.0054	1.097	NaN	1	0	Median	139920000	73819000	66102000	0	0	0	39603000	21327000	18276000	61253000	31884000	29369000	39064000	20607000	18457000	24891	4505	23588	155901;155902;155903	211241	211241			1	
ILDVAQDLK	1	Unmodified	1013.5757	0.57571092	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	51.963	51.32	2	0.016245	45556	160511_QHF_FH_JSI9i_1	43.272	5.1858			1.001	0.95368	14.661	5	0	Median	0.98883	0.80468	NaN	1	0	Median	0.81257	0.95368	NaN	1	0	Median	1.0051	0.97699	4.647	2	0	Median	1.172	1.2095	NaN	1	0	Median	334570000	172920000	161650000	51978000	23457000	28521000	96783000	63387000	33395000	111890000	52727000	59164000	73915000	33345000	40570000	24892	21	23589	155904;155905;155906;155907;155908	211242	211242			1	
ILDVASLEVLNEVNRR	0	Unmodified	1839.0214	0.021410729	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	85.814	85.083	3	1.5952E-05	74914	160511_QHF_FH_JSI11i_2	92.063	73.925			0.90157	1.1014	10.489	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90157	1.1014	NaN	1	0	Median	1.1432	1.1644	NaN	1	0	Median	0.86003	0.95049	NaN	1	0	Median	482950000	257850000	225100000	0	0	0	192220000	108380000	83841000	164120000	84452000	79673000	126600000	65020000	61583000	24893	3860	23590	155909;155910;155911	211243;211244	211244			2	
ILDVLEEIPK	1	Unmodified	1167.6751	0.67509062	2756	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	1	3	3	83.633	82.954	2	0.0020329	72888	160511_QHF_FH_JSI11i_2	62.303	49.676			0.82824	0.72477	59.458	9	8	Median	1.3673	1.1503	73.061	2	2	Median	0.4465	0.53526	NaN	1	1	Median	1.0714	1.0864	86.417	3	2	Median	0.65751	0.72477	42.631	3	3	Median	1311100000	662520000	648540000	221000000	90018000	130990000	152550000	101840000	50710000	472420000	240320000	232100000	465090000	230350000	234750000	24894	2756	23591	155912;155913;155914;155915;155916;155917;155918;155919;155920	211245;211246;211247;211248;211249;211250;211251;211252;211253;211254	211253			10	
ILDVMYSR	0	Unmodified	995.511	0.51100218	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	14.8	0.687							2	3	1	1	2	2	1	55.741	45.275	2	0.01978	24977	160513_QHF_FH_JSI11Kac_5	57.177	20.084			1.1066	1.1388	9.595	6	0	Median	1.3319	1.1442	NaN	1	0	Median	0.97317	1.1673	4.1733	2	0	Median	1.1066	1.1016	3.4816	2	0	Median	1.2859	1.4129	NaN	1	0	Median	79927000	34999000	44928000	24004000	10532000	13472000	20520000	8760700	11759000	24304000	10718000	13586000	11099000	4988600	6110700	24895	2094	23592	155921;155922;155923;155924;155925;155926	211255	211255			1	
ILDVMYSRLPK	1	Unmodified	1333.7428	0.74279303	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	57.865	57.61	3	0.022369	47218	160511_QHF_FH_JSI9i_3	33.207	24.203			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17044000	17044000	0	0	0	0	0	0	0	0	0	0	17044000	17044000	0	24896	2094	23593	155927;155928	211256;211257	211256			2	
ILDVNDNIPVVENK	1	Unmodified	1580.841	0.84098675	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.497	65.896	2;3	1.1911E-05	59888	160511_QHF_FH_JSI11i_1	125.82	107.95			1.0885	1.1255	17.5	8	1	Median	1.3829	1.1363	33.671	2	1	Median	1.0196	1.1898	10.53	2	0	Median	1.2327	1.1929	5.5405	2	0	Median	0.90478	0.92903	4.9639	2	0	Median	816460000	389820000	426640000	182710000	85026000	97683000	211100000	109010000	102090000	247490000	110430000	137060000	175160000	85360000	89802000	24897	2493	23594	155929;155930;155931;155932;155933;155934;155935;155936	211258;211259;211260;211261;211262;211263;211264;211265;211266;211267;211268;211269;211270;211271	211260			14	
ILDWHVANTDK	1	Unmodified	1310.6619	0.66190017	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	4	4	3	45.199	44.474	2;3	1.9581E-05	37683	160511_QHF_FH_JSI12i_3	103.31	65.584			1.1443	1.1588	65.448	13	7	Median	2.3626	2.0618	6.2656	2	2	Median	1.8477	2.2117	110.54	4	3	Median	1.0116	0.97055	48.985	4	2	Median	1.1443	1.1588	10.051	3	0	Median	2369700000	892490000	1477200000	129610000	38642000	90964000	318850000	134800000	184050000	898140000	321900000	576240000	1023100000	397150000	625970000	24898	1471	23595	155937;155938;155939;155940;155941;155942;155943;155944;155945;155946;155947;155948;155949	211272;211273;211274;211275;211276;211277;211278;211279;211280;211281;211282;211283;211284;211285;211286;211287	211285			16	
ILDWHVANTDKK	2	Unmodified	1438.7569	0.75686319	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.64		5	19						4	7	9	6	6	38.401	36.699	2;3;4	9.9703E-16	30604	160511_QHF_FH_JSI12i_3	172.27	140.85			0.89676	0.98046	60.258	27	8	Median	1.6577	1.3538	41.929	7	4	Median	0.89385	1.0477	21.823	9	2	Median	2.649	2.4488	126.74	5	2	Median	0.76799	0.79637	35.203	6	0	Median	8711800000	4006000000	4705800000	976560000	360100000	616460000	1270700000	597080000	673590000	3002400000	1573700000	1428700000	3462100000	1475100000	1987000000	24899	1471	23596	155950;155951;155952;155953;155954;155955;155956;155957;155958;155959;155960;155961;155962;155963;155964;155965;155966;155967;155968;155969;155970;155971;155972;155973;155974;155975;155976;155977	211288;211289;211290;211291;211292;211293;211294;211295;211296;211297;211298;211299;211300;211301;211302;211303;211304;211305;211306;211307;211308;211309;211310;211311;211312;211313;211314;211315;211316;211317;211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328;211329;211330;211331;211332;211333;211334;211335;211336;211337;211338;211339;211340;211341;211342	211337			54	
ILEAHQNVAQMSLIEAK	1	Unmodified	1893.9982	0.99823245	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.42		7							3	2	3	3	2	61.008	57.149	2;3	2.0094E-16	50661	160511_QHF_FH_JSI10i_2	120.14	96.531			0.87909	0.9077	21.758	8	1	Median	1.1825	1.0106	6.8979	2	0	Median	0.67654	0.80882	6.5431	2	0	Median	0.84996	0.856	35.96	3	1	Median	0.90922	1.0301	NaN	1	0	Median	1243900000	650500000	593370000	276220000	131510000	144710000	291090000	173330000	117760000	385580000	191900000	193680000	290990000	153760000	137230000	24900	3965	23597	155978;155979;155980;155981;155982;155983;155984;155985;155986;155987	211343;211344;211345;211346;211347;211348;211349;211350;211351;211352;211353;211354;211355;211356;211357;211358	211354			16	
ILEAHQNVAQMSLIEAK	1	Oxidation (M)	1909.9931	0.99314707	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			45.193	44.228	3	0.001677	38962	160511_QHF_FH_JSI10i_2	48.053	37.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24901	3965	23597	155988	211359	211359		2366	1	
ILEASQLK	1	Unmodified	900.52803	0.52803245	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				29.074	28.034	2	0.040862	24269	160511_QHF_FH_JSI9i_2	47.849	7.7455			1.1137	0.94507	NaN	1	1	Median	1.1137	0.94507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23382000	10064000	13318000	23382000	10064000	13318000	0	0	0	0	0	0	0	0	0	24902	128	23598	155989	211360	211360			1	
ILEAWEANDHTQAAGGMR	0	Unmodified	1968.9112	0.91120835	487	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.123	43.885	3	0.0083895	37502	160511_QHF_FH_JSI12i_3	46.159	28.242			1.0667	1.1055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0667	1.1055	NaN	1	1	Median	24602000	15088000	9513900	0	0	0	0	0	0	0	0	0	24602000	15088000	9513900	24903	487	23599	155990	211361	211361			1	
ILEDDLK	1	Unmodified	844.4542	0.45419881	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	28.152	27.771	2	0.04193	24882	160511_QHF_FH_JSI12i_1	46.426	7.6341			1.0988	1.0974	9.3681	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0791	1.0271	NaN	1	0	Median	1.1188	1.1725	NaN	1	0	Median	300960000	135940000	165020000	0	0	0	0	0	0	154410000	74283000	80123000	146560000	61662000	84895000	24904	1945	23600	155991;155992	211362	211362			1	
ILEDLDSLGVLICYMHNK	1	Unmodified	2132.0646	0.064597452	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		94.287	84.903	3	1.8315E-06	47968	160513_QHF_FH_JSI11Kac_6	101.15	76.861			1.2702	1.2209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2702	1.2209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46674000	21919000	24755000	0	0	0	0	0	0	46674000	21919000	24755000	0	0	0	24905	5552	23601	155993	211363	211363			1	
ILEDNSIPQVK	1	Unmodified	1254.682	0.68196691	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	46.324	45.725	2;3	0.00051942	41090	160511_QHF_FH_JSI10i_1	47.559	30.192			0.79246	0.92495	8.3403	7	0	Median	1.1474	0.93431	NaN	1	0	Median	0.77587	0.92081	0.63352	2	0	Median	1.0293	1.0035	4.8607	2	0	Median	0.78899	0.82603	2.9732	2	0	Median	2799100000	1442800000	1356400000	621260000	288630000	332630000	699570000	377500000	322070000	769560000	424180000	345380000	708760000	352460000	356300000	24906	990	23602	155994;155995;155996;155997;155998;155999;156000	211364;211365;211366;211367;211368;211369;211370;211371;211372;211373	211372			10	
ILEDSGFDEQQEFR	0	Unmodified	1711.7689	0.76894402	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	55.131	54.349	2	2.4237E-06	49330	160511_QHF_FH_JSI12i_1	87.667	74.712			1.1338	1.1135	10.016	2	0	Median	1.4442	1.1952	NaN	1	0	Median	0.89011	1.0374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112990000	51040000	61947000	44174000	14879000	29296000	68812000	36161000	32651000	0	0	0	0	0	0	24907	413	23603	156001;156002;156003	211374;211375;211376;211377;211378	211374			5	
ILEDTQFVDGYK	1	Unmodified	1426.698	0.6980109	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	57.746	56.997	2	5.7088E-05	50664	160511_QHF_FH_JSI9i_1	108.47	84.381			0.96984	0.85606	25.603	5	5	Median	1.355	1.1081	39.023	2	2	Median	0.65251	0.7686	NaN	1	1	Median	0.86747	0.85606	NaN	1	1	Median	0.96984	1.0398	NaN	1	1	Median	1179500000	600410000	579040000	431680000	209940000	221740000	233140000	132430000	100710000	232150000	118770000	113380000	282490000	139280000	143210000	24908	2591	23604	156004;156005;156006;156007;156008	211379;211380;211381;211382;211383	211383			5	
ILEEENSLAEYHSR	0	Unmodified	1688.8006	0.8005785	2695	Q15650	TRIP4	Activating signal cointegrator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		37.025	36.211	3	9.5654E-05	31798	160511_QHF_FH_JSI10i_2	78.69	65.265			1.4288	1.2081	14.793	3	2	Plateau	1.4288	1.2081	NaN	1	0	Median	1.3192	1.6188	NaN	1	1	Median	1.4453	1.4528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	200770000	83014000	117760000	54107000	19690000	34417000	72198000	31037000	41161000	74469000	32286000	42183000	0	0	0	24909	2695	23605	156009;156010;156011	211384;211385;211386	211386			2	
ILEEFRK	1	Unmodified	933.52837	0.5283668	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.85	22.832	3	0.017639	18872	160511_QHF_FH_JSI12i_3	41.892	0			0.2181	0.21466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2181	0.21466	NaN	1	1	Median	346820000	253550000	93270000	0	0	0	0	0	0	0	0	0	346820000	253550000	93270000	24910	4518	23606	156012	211387	211387			1	
ILEEIDTLILPENFK	1	Unmodified	1785.9764	0.9764176	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2									2	4	2	101.26	101.17	2;3	8.1734E-40	91886	160511_QHF_FH_JSI10i_1	240.12	179.69			0.93752	0.94798	15.062	8	1	Median	NaN	NaN	NaN	0	0	Median	0.69514	0.81067	17.3	2	0	Median	1.0144	1.0139	9.4939	4	1	Median	0.91102	0.94063	20.699	2	0	Median	815220000	417280000	397940000	0	0	0	224750000	133270000	91476000	352450000	176370000	176070000	238020000	107630000	130390000	24911	4326	23607	156013;156014;156015;156016;156017;156018;156019;156020	211388;211389;211390;211391;211392;211393;211394;211395;211396	211393			9	
ILEENNRK	1	Unmodified	1014.5458	0.54580778	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1	By MS/MS	By matching		By matching	2.33	0.471		2	1							1	1		1	5.7429	5.4934	3	0.0016936	3334	160511_QHF_FH_JSI9i_2	60.91	26.704			0.72434	0.85404	24.328	3	0	Plateau	0.99933	0.85404	NaN	1	0	Median	0.91852	1.1352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69028	0.69957	NaN	1	0	Median	547340000	260960000	286380000	153170000	70136000	83033000	183620000	80085000	103530000	0	0	0	210560000	110740000	99819000	24912	5065	23608	156021;156022;156023	211397	211397			1	
ILEFFGLK	1	Unmodified	965.5586	0.5586043	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.3	2	4	5					1	4	4	4	4	4	84.186	81.085	2	0.00043207	73851	160511_QHF_FH_JSI11i_2	119.57	54.789			0.98287	0.96205	33.347	16	3	Median	1.0827	0.89975	9.7835	4	0	Median	0.8442	1.0085	6.0036	4	0	Median	1.0282	1.0141	30.059	4	1	Median	0.81815	0.88415	64.012	4	2	Median	11006000000	5382700000	5623400000	2419500000	875120000	1544400000	2604800000	1421900000	1182900000	3572300000	1840000000	1732400000	2409500000	1245700000	1163800000	24913	867	23609	156024;156025;156026;156027;156028;156029;156030;156031;156032;156033;156034;156035;156036;156037;156038;156039	211398;211399;211400;211401;211402;211403;211404;211405;211406;211407;211408;211409;211410;211411;211412;211413;211414;211415;211416;211417;211418;211419;211420;211421;211422;211423;211424;211425;211426;211427;211428;211429;211430;211431;211432;211433;211434;211435;211436;211437;211438	211426			41	
ILEFFGLKK	2	Unmodified	1093.6536	0.65356732	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.54		6	15						6	6	7	7	7	69.143	66.463	2;3	0.00058273	58859	160511_QHF_FH_JSI11i_3	73.233	59.115			0.5366	0.56407	118.7	25	23	Median	0.75103	0.64144	125.33	6	5	Median	0.6026	0.73464	75.42	6	5	Median	0.5366	0.52153	133.77	7	7	Median	0.6536	0.69141	151.85	6	6	Median	3315400000	1637500000	1677900000	723370000	405800000	317570000	734430000	457120000	277320000	694050000	258400000	435640000	1163500000	516180000	647370000	24914	867	23610	156040;156041;156042;156043;156044;156045;156046;156047;156048;156049;156050;156051;156052;156053;156054;156055;156056;156057;156058;156059;156060;156061;156062;156063;156064;156065;156066	211439;211440;211441;211442;211443;211444;211445;211446;211447;211448;211449;211450;211451;211452;211453;211454;211455;211456;211457;211458;211459;211460;211461;211462;211463;211464;211465;211466;211467;211468;211469;211470;211471;211472;211473	211439			35	
ILEFFGLKK	2	Acetyl (K)	1135.6641	0.664132	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	84.744	75.365	2	0.0044506	41686	160513_QHF_FH_JSI11Kac_6	82.279	39.155			0.05193	0.053516	8.6402	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.058349	0.056888	NaN	1	1	Median	0.046218	0.050345	NaN	1	1	Median	99402000	95742000	3659900	0	0	0	0	0	0	87040000	83652000	3388300	12361000	12090000	271590	24915	867	23610	156067;156068	211474;211475	211474	570		2	
ILEFIAVSQLR	0	Unmodified	1287.7551	0.75507227	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	3	3	1	85.282	82.239	2	0.00012209	41444	160513_QHF_FH_JSI11Kac_6	93.556	70.202			0.82682	0.88501	31.762	9	4	Median	1.4005	1.208	25.43	2	1	Median	0.76656	0.92566	37.087	3	1	Plateau	0.83505	0.83774	21.841	3	2	Median	0.82682	0.91455	NaN	1	0	Median	1287900000	634640000	653300000	406890000	183050000	223840000	356630000	157300000	199330000	446910000	254410000	192490000	77513000	39872000	37642000	24916	1459	23611	156069;156070;156071;156072;156073;156074;156075;156076;156077	211476;211477;211478;211479;211480;211481;211482;211483;211484;211485	211479			10	
ILEFVGR	0	Unmodified	832.48069	0.48068833	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	46.09	45.291	2	0.035531	38931	160511_QHF_FH_JSI11i_2	49.59	13.033			0.99249	1.0091	12.416	4	0	Median	1.3458	1.1585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91145	0.92002	NaN	1	0	Median	0.94725	1.0042	13.752	2	0	Median	651330000	322440000	328890000	135960000	55347000	80610000	0	0	0	233430000	114920000	118520000	281940000	152180000	129760000	24917	953;1699	23612	156078;156079;156080;156081	211486	211486			1	
ILEGGPILPK	1	Unmodified	1035.6328	0.63283187	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		53.882	53.164	2	0.038241	45861	160511_QHF_FH_JSI11i_2	38.086	15.346			1.0555	1.2003	11.674	4	0	Median	1.1189	0.97474	NaN	1	0	Median	0.9875	1.2003	4.2917	2	0	Median	1.2562	1.258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156500000	88655000	67848000	36994000	18673000	18321000	66426000	40930000	25496000	53081000	29051000	24030000	0	0	0	24918	5412	23613	156082;156083;156084;156085	211487	211487			1	
ILEGSGATEFHCSAR	0	Unmodified	1633.7519	0.75185416	4993	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	28.648	28.145	3	0.00012021	24581	160511_QHF_FH_JSI10i_2	82.259	67.828			2.1343	1.5043	38.973	4	3	Linear	0.96195	0.83894	NaN	1	1	Median	1.2409	1.5246	NaN	1	1	Median	1.6264	1.4842	NaN	1	1	Median	2.1333	2.149	NaN	1	0	Median	290110000	130180000	159930000	48771000	26069000	22702000	66248000	29109000	37139000	91987000	39863000	52124000	83105000	35140000	47965000	24919	4993	23614	156086;156087;156088;156089	211488;211489;211490;211491	211490			4	
ILEGTETTK	1	Unmodified	990.52334	0.523341	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.853	13.415	2	0.0040651	11166	160511_QHF_FH_JSI12i_1	57.59	36.289			0.93579	0.98225	23.589	4	0	Median	0.83665	0.67568	NaN	1	0	Median	1.0012	1.1609	NaN	1	0	Median	1.0689	1.0532	NaN	1	0	Median	0.87468	0.91605	NaN	1	0	Median	862530000	481470000	381060000	233610000	138270000	95334000	207480000	100790000	106690000	179700000	102760000	76935000	241740000	139640000	102110000	24920	2104	23615	156090;156091;156092;156093	211492;211493	211493			2	
ILEHMPVSNQKPDTDEAEDPEK	2	Unmodified	2521.1642	0.16424773	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							1	2	3		37.149	36.653	3;4	9.2692E-16	31992	160511_QHF_FH_JSI11i_3	133.38	129.78			0.89939	0.96537	34.75	6	2	Median	1.4102	1.1949	NaN	1	0	Median	0.7019	0.85899	21.488	2	0	Median	0.98688	0.93199	47.552	3	2	Median	NaN	NaN	NaN	0	0	Median	470960000	250490000	220470000	21928000	11483000	10445000	162140000	87668000	74467000	286890000	151340000	135560000	0	0	0	24921	4449	23616	156094;156095;156096;156097;156098;156099	211494;211495;211496;211497;211498;211499;211500;211501;211502;211503;211504	211494			11	
ILELDQELIK	1	Unmodified	1212.6966	0.69655434	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	73.012	72.317	2	0.0011033	65792	160511_QHF_FH_JSI11i_1	67.881	47.256			0.94343	0.96406	7.98	8	0	Median	1.1307	0.96561	5.5332	2	0	Median	0.77503	0.92645	6.6851	2	0	Median	0.93285	0.92484	4.8151	2	0	Median	0.99879	1.0684	8.5141	2	0	Median	472960000	249660000	223290000	69395000	29246000	40149000	127270000	77453000	49813000	137410000	68744000	68670000	138880000	74222000	64661000	24922	3896	23617	156100;156101;156102;156103;156104;156105;156106;156107	211505;211506;211507;211508;211509;211510;211511	211506			7	
ILELDQFK	1	Unmodified	1004.5542	0.5542472	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.4	0.49	3	2								1	1	2	1	61.817	61.208	2	0.0034803	53708	160511_QHF_FH_JSI9i_2	81.191	26.579			0.81765	0.84168	27.201	4	0	Median	1.5944	1.3696	NaN	1	0	Median	0.66626	0.79388	NaN	1	0	Median	0.78348	0.75126	NaN	1	0	Median	0.85331	0.89235	NaN	1	0	Median	270130000	139480000	130650000	109640000	45623000	64018000	60555000	40438000	20117000	61867000	37584000	24282000	38064000	15834000	22231000	24923	1023	23618	156108;156109;156110;156111;156112	211512;211513	211512			2	
ILELEGISPEYFQSVSFSGKR	1	Acetyl (K)	2427.2322	0.23219137	4979	Q9NS73	MBIP	MAP3K12-binding inhibitory protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.804	83.432	3	0.00010775	46959	160513_QHF_FH_JSI11Kac_6	106.86	91.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15988000	15988000	0	0	0	0	0	0	0	15988000	15988000	0	0	0	0	24924	4979	23619	156113	211514	211514	3281		1	
ILELLRPDPNTGK	1	Unmodified	1464.83	0.83002813	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	3	1	53.524	52.677	2;3	0.0030524	45075	160511_QHF_FH_JSI12i_3	58.098	38.967			2.1916	2.0311	133.04	10	10	Median	2.9825	2.5353	123.27	3	3	Median	0.38936	0.44822	130.17	3	3	Plateau	1.746	1.6272	170.15	3	3	Median	0.18988	0.18916	NaN	1	1	Median	4068200000	2184000000	1884100000	397580000	165560000	232020000	943000000	474430000	468570000	1837800000	913720000	924060000	889810000	630310000	259500000	24925	2665	23620	156114;156115;156116;156117;156118;156119;156120;156121;156122;156123	211515;211516;211517;211518;211519;211520;211521;211522;211523;211524;211525	211525			11	
ILELSGSSSEDSEK	1	Unmodified	1479.694	0.69404774	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.53	5		1			3				1	2	4	2	36.917	32.784	2;3	3.6745E-10	28791	160511_QHF_FH_JSI9i_1	151.98	131.11			1.1015	1.13	20.004	7	1	Median	1.4072	1.157	NaN	1	0	Median	1.0653	1.2596	28.499	2	0	Median	1.1015	1.0844	23.29	3	1	Median	1.0204	1.13	NaN	1	0	Median	2638100000	1411900000	1226100000	719640000	358310000	361330000	938680000	554490000	384180000	964080000	491620000	472460000	15666000	7513900	8151700	24926	2094	23621	156124;156125;156126;156127;156128;156129;156130;156131;156132	211526;211527;211528;211529;211530;211531;211532;211533;211534;211535;211536;211537;211538;211539	211535			14	
ILEMDPSNVQGK	1	Unmodified	1329.6599	0.65985126	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.755	42.392	2	0.00077158	38309	160511_QHF_FH_JSI11i_1	70.389	43.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24927	3195	23622	156133	211540	211540			1	
ILEMFSAHNLQSVFSR	0	Unmodified	1877.9458	0.94580295	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			83.581	76.476	3	0.00012407	43055	160513_QHF_FH_JSI10Kac_6	138.08	117.35			0.55779	0.55404	33.701	2	2	Median	0.506	0.43656	NaN	1	1	Median	0.61488	0.70313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113600000	71409000	42189000	30269000	15891000	14378000	83329000	55518000	27811000	0	0	0	0	0	0	24928	3087	23623	156134;156135	211541;211542	211542			2	
ILENQLVLK	1	Unmodified	1068.6543	0.6542956	5848				yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	67.675	67.526	2	0.0069192	58514	160511_QHF_FH_JSI12i_3	62.659	17.577	+		12.531	12.178	51.221	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18.935	17.494	NaN	1	1	Median	8.2935	8.4779	NaN	1	1	Median	277640000	20813000	256820000	0	0	0	0	0	0	140250000	13801000	126450000	137380000	7011900	130370000	24929	5848	23624	156136;156137	211543;211544	211544			2	
ILEPGLNILIPVLDR	0	Unmodified	1674.008	0.0079924964	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	4	4	4	102.21	102.12	2;3	1.4208E-16	91309	160511_QHF_FH_JSI11i_3	139.78	75.964			1.0602	1.1196	20.52	13	0	Median	1.3563	1.1547	11.901	2	0	Median	0.84396	1.0685	6.5326	4	0	Linear	1.0898	1.1196	5.7264	3	0	Median	1.1835	1.2715	32.255	4	0	Median	2960300000	1434800000	1525500000	431800000	172320000	259480000	563570000	309830000	253740000	697580000	339410000	358170000	1267400000	613190000	654160000	24930	5357	23625	156138;156139;156140;156141;156142;156143;156144;156145;156146;156147;156148;156149;156150;156151	211545;211546;211547;211548;211549;211550;211551;211552;211553;211554;211555;211556;211557;211558;211559;211560;211561	211546			16	
ILEPPEGQDEGVWK	1	Unmodified	1595.7831	0.78313752	5567	Q9Y3A3	MOB4	MOB-like protein phocein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	58.477	57.579	2	0.0031006	51048	160511_QHF_FH_JSI9i_1	66.267	49.596			0.59868	0.55559	62.744	2	2	Median	0.43395	0.35651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82595	0.86584	NaN	1	1	Median	130060000	83382000	46676000	109040000	69941000	39098000	0	0	0	0	0	0	21020000	13442000	7578500	24931	5567	23626	156152;156153	211562;211563	211563			2	
ILEQEEEEEQAGKPGEPSK	2	Unmodified	2126.0015	0.0015227276	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	25.345	24.836	3	9.4146E-11	21281	160511_QHF_FH_JSI9i_1	131.71	114.63			0.92781	0.80859	46.555	5	2	Median	0.92781	0.7548	NaN	1	0	Median	0.83406	0.99712	84.99	2	2	Median	0.84345	0.80859	NaN	1	0	Median	1.1421	1.2173	NaN	1	0	Median	1489700000	760400000	729270000	289090000	137090000	152000000	527100000	262300000	264800000	329390000	162150000	167240000	344080000	198850000	145240000	24932	4521	23627	156154;156155;156156;156157;156158	211564;211565;211566;211567;211568;211569;211570;211571	211570			8	
ILEQEEEEEQAGKPGEPSKK	3	Unmodified	2254.0965	0.096485745	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		20.705	20.122	3;4	1.8303E-06	17186	160511_QHF_FH_JSI10i_2	95.666	83.003			0.89298	0.81539	11.816	3	2	Plateau	1.0569	0.89453	NaN	1	1	Median	0.8379	1.031	NaN	1	1	Median	0.89298	0.81539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	139920000	66725000	73195000	29221000	9452400	19768000	39947000	22421000	17526000	70752000	34852000	35901000	0	0	0	24933	4521	23628	156159;156160;156161;156162	211572;211573;211574;211575;211576;211577	211577			6	
ILEQENEHLNQTVSSLR	0	Unmodified	2009.0178	0.017781914	2822	Q3V6T2	CCDC88A	Girdin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	47.539	46.583	3	0.0023208	40910	160511_QHF_FH_JSI10i_2	38.777	30.863			0.55899	0.58465	14.084	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52761	0.52923	NaN	1	0	Median	0.59223	0.64588	NaN	1	1	Median	58666000	36450000	22216000	0	0	0	0	0	0	40740000	23620000	17120000	17926000	12830000	5096100	24934	2822	23629	156163;156164;156165	211578;211579;211580	211580			2	
ILEQQNSSR	0	Unmodified	1073.5465	0.54653606	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	7.9862	6.7936	2	0.00069719	5210	160511_QHF_FH_JSI10i_1	75.825	43.683			1.0011	1.0385	6.5557	9	0	Median	1.2683	1.0718	4.7269	2	0	Median	0.92011	1.0961	0.23747	2	0	Median	1.0423	1.0297	10.963	3	0	Median	0.9431	1.0121	3.6405	2	0	Median	2575200000	1279800000	1295500000	548790000	246940000	301850000	642540000	346360000	296180000	683130000	340470000	342650000	700800000	346000000	354800000	24935	2725	23630	156166;156167;156168;156169;156170;156171;156172;156173;156174	211581;211582;211583;211584;211585;211586;211587;211588;211589;211590;211591;211592;211593;211594	211584			14	
ILESASSNSHLADYVLYK	1	Unmodified	2009.0106	0.010571271	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	64.807	64.087	3	6.2118E-06	55246	160511_QHF_FH_JSI12i_2	85.146	67.777			0.82388	0.96521	35.769	5	1	Median	0.82388	0.70806	NaN	1	0	Median	0.7769	0.96521	NaN	1	0	Median	0.82123	0.79282	54.507	2	1	Median	1.1228	1.2748	NaN	1	0	Median	250710000	142990000	107720000	43712000	26883000	16828000	60450000	35154000	25296000	95447000	54176000	41271000	51103000	26775000	24328000	24936	2755	23631	156175;156176;156177;156178;156179;156180	211595;211596;211597;211598	211596			4	
ILESDRK	1	Unmodified	859.47633	0.47633123	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29		6	3					7		3	4	4	5	6.1173	1.8413	2;3	0.0014959	2249	160513_QHF_FH_JSI9Kac_5	83.614	32.648			0.99515	1.0684	13.555	16	0	Median	1.3352	1.1257	5.643	3	0	Median	1.0378	1.2609	19.341	4	0	Linear	1.2116	1.1844	8.5953	4	0	Median	0.86734	1.0394	7.958	5	0	Linear	11013000000	5120600000	5891900000	1742800000	656940000	1085900000	1671500000	835640000	835890000	3114000000	1326800000	1787100000	4484200000	2301200000	2183000000	24937	1372	23632	156181;156182;156183;156184;156185;156186;156187;156188;156189;156190;156191;156192;156193;156194;156195;156196	211599;211600;211601;211602;211603;211604;211605;211606;211607;211608;211609;211610;211611;211612;211613;211614;211615;211616;211617;211618;211619	211604			21	
ILESGPFVSCVK	1	Unmodified	1334.6904	0.69042311	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1		2	2	1	63.953	61.354	2	0.0002858	48473	160511_QHF_FH_JSI12i_2	92.538	60.904		+	0.97852	0.97478	30.864	5	3	Median	NaN	NaN	NaN	0	0	Median	1.1129	1.3758	49.519	2	2	Median	1.0244	1.0065	9.8898	2	1	Median	0.85161	0.97478	NaN	1	0	Median	391580000	187050000	204530000	0	0	0	86561000	43653000	42908000	239480000	119680000	119800000	65535000	23717000	41819000	24938	66	23633	156197;156198;156199;156200;156201	211620;211621;211622;211623;211624;211625;211626	211622			7	
ILESSQTLLSVLK	1	Unmodified	1429.8392	0.83919583	377	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.143	85.462	2	0.0044114	75045	160511_QHF_FH_JSI11i_2	54.784	31.43			1.0548	1.1069	9.7382	4	0	Median	1.1139	0.93858	NaN	1	0	Median	0.94098	1.1503	NaN	1	0	Median	1.113	1.1568	NaN	1	0	Median	0.99957	1.0652	NaN	1	0	Median	108020000	52074000	55942000	22345000	9013000	13332000	22758000	12265000	10494000	36273000	17231000	19042000	26639000	13566000	13074000	24939	377	23634	156202;156203;156204;156205	211627;211628;211629	211629			3	
ILETLYTLGK	1	Unmodified	1149.6645	0.66452593	3005	Q5W0V3	FAM160B1	Protein FAM160B1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.001	65.439	2	0.0029537	57091	160511_QHF_FH_JSI11i_2	71.451	51.121			2.0899	2.0451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0899	2.0451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41944000	15015000	26929000	0	0	0	0	0	0	41944000	15015000	26929000	0	0	0	24940	3005	23635	156206	211630	211630			1	
ILETTMTPTGIDTAK	1	Unmodified	1590.8175	0.81747411	5431	Q9UMZ2	SYNRG	Synergin gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	56.1	55.326	2	1.3654E-11	50134	160511_QHF_FH_JSI11i_1	108.37	79.676			1.0774	1.0361	25.5	2	2	Median	1.0601	0.86512	NaN	1	1	Median	1.095	1.2408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39449000	22659000	16791000	21655000	8201900	13453000	17794000	14457000	3337400	0	0	0	0	0	0	24941	5431	23636	156207;156208;156209;156210;156211	211631;211632;211633;211634;211635	211631			5	
ILETTTFFQR	0	Unmodified	1254.6608	0.66083754	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		62.947	62.26	2	2.4401E-07	55231	160511_QHF_FH_JSI10i_2	114.89	79.599			0.86316	0.96404	23.346	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67187	0.81734	NaN	1	0	Median	1.1089	1.1371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	471660000	232530000	239130000	0	0	0	248420000	143380000	105040000	223240000	89151000	134090000	0	0	0	24942	5135	23637	156212;156213	211636;211637;211638	211638			3	
ILETWGELLSK	1	Unmodified	1287.7075	0.70745338	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.119	83.287	2	0.014842	73140	160511_QHF_FH_JSI11i_2	51.762	36.147			0.94447	1.0021	0.0094159	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96755	1.002	NaN	1	1	Median	0.92194	1.0022	NaN	1	0	Median	68550000	36010000	32540000	0	0	0	0	0	0	35552000	22054000	13498000	32997000	13956000	19042000	24943	5599	23638	156214;156215	211639;211640	211640			2	
ILEVHIDK	1	Unmodified	965.55458	0.55458155	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	36.355	35.501	2;3	0.00025474	31138	160511_QHF_FH_JSI10i_2	87.308	8.9731			1.0611	1.0375	16.175	9	0	Median	1.0871	0.93349	2.7676	2	0	Median	0.84895	1.0542	5.7161	2	0	Median	1.1612	1.1734	20.7	2	0	Median	1.2184	1.3767	15.91	3	0	Plateau	1842600000	881190000	961450000	375530000	172230000	203300000	478840000	254220000	224620000	575970000	268820000	307150000	412300000	185920000	226380000	24944	1376	23639	156216;156217;156218;156219;156220;156221;156222;156223;156224	211641;211642;211643;211644;211645;211646;211647;211648;211649	211649			9	
ILEVHVDK	1	Unmodified	951.53893	0.53893149	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	6.08		7	1					4		4	3	3	2	31.224	27.371	2;3	0.0005374	22710	160511_QHF_FH_JSI11i_2	74.464	31.866			0.94386	0.96172	12.882	12	0	Median	1.1725	0.9977	18.572	4	0	Median	0.74544	0.90661	7.5375	3	0	Median	0.9513	0.96231	6.8691	3	0	Median	0.90726	0.99174	4.4321	2	0	Median	1008000000	533410000	474540000	215880000	96959000	118920000	208750000	125650000	83098000	388460000	212520000	175930000	194870000	98275000	96592000	24945	456	23640	156225;156226;156227;156228;156229;156230;156231;156232;156233;156234;156235;156236	211650;211651;211652;211653;211654;211655;211656;211657;211658;211659;211660;211661;211662;211663;211664;211665;211666;211667	211658			17	
ILEVNHVNVEGATHK	1	Unmodified	1658.874	0.87401821	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	33.109	32.731	3;4	0.00023919	28433	160511_QHF_FH_JSI11i_3	65.231	50.878			1.0019	1.0168	46.857	3	1	Median	2.0947	1.7674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76156	0.6961	NaN	1	0	Median	1.0019	1.0168	NaN	1	0	Median	266000000	109560000	156440000	93875000	38038000	55837000	0	0	0	70445000	32093000	38353000	101680000	39428000	62252000	24946	4164	23641	156237;156238;156239	211668;211669;211670	211668			3	
ILEVVNQIQDEER	0	Unmodified	1583.8155	0.81550028	626	O94919	ENDOD1	Endonuclease domain-containing 1 protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				60.241	59.268	2	0.0013382	52090	160511_QHF_FH_JSI9i_2	60.434	36.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24947	626	23642	156240	211671	211671			1	
ILFDGIPLEK	1	Unmodified	1143.654	0.65396125	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		81.075	80.54	2	0.012464	70908	160511_QHF_FH_JSI11i_2	45.161	27.775			1.1181	0.85716	20.341	4	0	Linear	0.95568	0.83279	NaN	1	0	Median	0.63576	0.74955	23.049	2	0	Median	1.0529	1.0388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128260000	73480000	54785000	33663000	17781000	15882000	39859000	24682000	15177000	54742000	31017000	23725000	0	0	0	24948	1200	23643	156241;156242;156243;156244	211672;211673;211674	211674			3	
ILFEDFR	0	Unmodified	938.48617	0.48616764	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	64.137	63.244	2	0.010853	54344	160511_QHF_FH_JSI12i_2	73.039	46.93			0.80428	0.90908	22.044	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0131	1.2413	NaN	1	0	Median	0.80428	0.81073	NaN	1	0	Median	0.80154	0.90908	NaN	1	0	Median	253930000	136120000	117810000	0	0	0	76790000	38617000	38173000	109080000	63722000	45358000	68062000	33785000	34277000	24949	3536	23644	156245;156246;156247	211675;211676;211677;211678;211679	211675			5	
ILFFNDK	1	Unmodified	895.48035	0.48035398	1315	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.585	61.679	2	0.048361	53580	160511_QHF_FH_JSI11i_2	43.246	20.317			0.89097	0.94848	11.081	4	0	Median	0.95136	0.78593	NaN	1	0	Median	0.8171	0.99947	NaN	1	0	Median	1.0035	0.98809	NaN	1	0	Median	0.83442	0.91046	NaN	1	0	Median	165030000	84499000	80530000	25706000	12526000	13180000	44550000	22803000	21746000	55882000	28648000	27234000	38891000	20521000	18370000	24950	1315	23645	156248;156249;156250;156251	211680	211680			1	
ILFFNTPK	1	Unmodified	978.55385	0.55385327	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	69.147	68.213	2	0.00057467	57226	160511_QHF_FH_JSI10i_3	113.7	76.675			0.96447	1.0383	6.2124	7	0	Median	1.2541	1.0534	2.0359	2	0	Median	0.86267	1.0359	4.4229	2	0	Median	1.071	1.0422	9.4643	2	0	Median	0.83885	0.92945	NaN	1	0	Median	2247900000	1111000000	1136800000	523970000	248800000	275170000	549580000	302580000	247000000	997700000	455520000	542180000	176610000	104120000	72493000	24951	1627	23646	156252;156253;156254;156255;156256;156257;156258	211681;211682;211683;211684;211685;211686;211687;211688;211689;211690	211685			10	
ILFHFAR	0	Unmodified	902.51266	0.51265716	5356	Q9UJY5	GGA1	ADP-ribosylation factor-binding protein GGA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	56.809	47.482	3	0.0078622	26021	160513_QHF_FH_JSI10Kac_6	54.787	44.876			0.80757	0.99147	21.008	4	0	Linear	1.0085	0.8664	NaN	1	0	Median	0.87332	1.0425	NaN	1	0	Median	0.95375	0.9429	NaN	1	0	Median	1.2835	1.4028	NaN	1	0	Median	64658000	33270000	31387000	12425000	6450800	5973900	30953000	15478000	15475000	13004000	6856500	6147900	8275600	4484700	3790800	24952	5356	23647	156259;156260;156261;156262	211691;211692;211693;211694;211695	211695			5	
ILFIFIDSDHTDNQR	0	Unmodified	1832.9057	0.90571227	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	5.97		5	20	2	1				11	13	11	10	5	85.001	81.445	2;3	0	42445	160513_QHF_FH_JSI10Kac_6	400.68	375.34			0.95883	0.95062	34.438	30	12	Median	1.5934	1.3584	24.247	9	4	Median	0.77928	0.92683	7.6795	10	3	Median	0.98108	0.92328	57.42	8	5	Median	0.94577	0.96433	24.692	3	0	Median	9149700000	3683300000	5466400000	2294100000	765540000	1528600000	3520500000	1508000000	2012600000	1543000000	772710000	770260000	1792000000	637090000	1155000000	24953	867	23648	156263;156264;156265;156266;156267;156268;156269;156270;156271;156272;156273;156274;156275;156276;156277;156278;156279;156280;156281;156282;156283;156284;156285;156286;156287;156288;156289;156290;156291;156292;156293;156294;156295;156296;156297;156298;156299;156300;156301	211696;211697;211698;211699;211700;211701;211702;211703;211704;211705;211706;211707;211708;211709;211710;211711;211712;211713;211714;211715;211716;211717;211718;211719;211720;211721;211722;211723;211724;211725;211726;211727;211728;211729;211730;211731;211732;211733;211734;211735;211736;211737;211738;211739;211740;211741;211742;211743;211744;211745;211746;211747;211748;211749;211750;211751;211752;211753;211754;211755	211754			60	
ILFIGGITAPTVR	0	Unmodified	1356.8129	0.8129215	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.683	76.433	2	2.7808E-22	42071	160513_QHF_FH_JSI11Kac_6	161.17	114.09			1.0479	1.1047	12.84	4	0	Median	1.5479	1.2963	NaN	1	0	Median	0.91959	1.0875	NaN	1	0	Median	1.1941	1.1222	NaN	1	0	Median	0.9015	0.948	NaN	1	0	Median	613250000	265250000	348000000	130940000	39243000	91695000	222740000	113450000	109300000	207650000	84690000	122960000	51915000	27868000	24048000	24954	1631	23649	156302;156303;156304;156305	211756;211757;211758;211759;211760;211761;211762	211757			7	
ILFLDPSGK	1	Unmodified	988.55933	0.55933258	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.52	2	3					2	4		2	2	3	4	72.938	66.286	2	1.2379E-05	58482	160511_QHF_FH_JSI11i_2	103.56	25.889			1.5302	1.0672	24.048	10	1	Linear	1.0763	0.91339	19.646	2	0	Median	0.74395	0.88763	28.413	2	0	Median	1.3101	1.2786	14.369	2	0	Median	1.0536	1.1092	25.007	4	1	Median	603370000	306220000	297150000	171030000	117150000	53882000	10794000	6955400	3839000	100680000	33920000	66760000	320870000	148200000	172670000	24955	741	23650	156306;156307;156308;156309;156310;156311;156312;156313;156314;156315;156316	211763;211764;211765;211766;211767;211768;211769;211770	211768			8	
ILFLDVLFPLVVDK	1	Unmodified	1629.9746	0.9745671	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		6	3						6	3	4	2	6	103.34	101.44	2	3.7635E-23	89743	160511_QHF_FH_JSI12i_2	144.65	105.38			0.81847	0.79625	25.21	8	8	Median	0.99409	0.86894	18.968	2	2	Median	0.48336	0.56907	21.685	2	2	Median	0.78805	0.78301	8.9815	2	2	Median	0.91565	0.9811	16.351	2	2	Median	748820000	393770000	355050000	341760000	144630000	197130000	244710000	160490000	84229000	101350000	56987000	44364000	60990000	31667000	29324000	24956	5135	23651	156317;156318;156319;156320;156321;156322;156323;156324;156325;156326;156327;156328;156329;156330;156331	211771;211772;211773;211774;211775;211776;211777;211778;211779;211780;211781;211782;211783;211784;211785	211773			15	
ILFNNAVK	1	Unmodified	917.53345	0.53345218	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	2	3	40.056	39.309	2	0.0024164	33358	160511_QHF_FH_JSI12i_3	88.643	25.929			0.68894	0.79253	18.207	6	3	Median	NaN	NaN	NaN	0	0	Median	0.63217	0.75679	12.178	2	1	Median	0.82139	0.79051	30.937	2	1	Median	0.82658	0.86935	18.735	2	1	Median	819240000	508450000	310790000	0	0	0	197180000	128420000	68759000	317560000	195370000	122200000	304500000	184670000	119830000	24957	900	23652	156332;156333;156334;156335;156336;156337;156338	211786;211787;211788;211789;211790;211791;211792;211793	211792			8	
ILFNNAVKK	2	Unmodified	1045.6284	0.6284152	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	29.099	28.404	3	0.0025822	23556	160511_QHF_FH_JSI12i_3	49.715	27.629			1.4779	1.3659	20.232	4	1	Median	1.4477	1.1806	NaN	1	0	Median	0.98728	1.1974	NaN	1	0	Median	1.8751	1.7812	NaN	1	1	Median	1.5088	1.558	NaN	1	0	Median	366470000	170260000	196210000	113400000	43370000	70032000	83309000	47217000	36092000	56554000	25151000	31403000	113200000	54520000	58682000	24958	900	23653	156339;156340;156341;156342	211794;211795	211795			2	
ILFQPQTNVYDSLAK	1	Unmodified	1735.9145	0.91448604	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								2	2	3	2	79.136	78.51	2	2.695E-10	69814	160511_QHF_FH_JSI10i_2	152.85	105.96			0.88762	0.87258	22.342	9	5	Median	0.83638	0.72848	17.255	2	2	Median	0.81686	0.95594	15.528	2	0	Median	0.89417	0.89592	9.5514	3	3	Median	0.82293	0.90362	47.975	2	0	Median	485810000	272620000	213190000	138890000	92436000	46459000	81703000	42645000	39057000	187030000	97256000	89772000	78182000	40281000	37901000	24959	614	23654	156343;156344;156345;156346;156347;156348;156349;156350;156351	211796;211797;211798;211799;211800;211801;211802;211803;211804;211805	211804			9	
ILFSSLILISK	1	Unmodified	1232.7744	0.77441073	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	4	2	2	2	97.966	93.202	2	7.8355E-11	46508	160513_QHF_FH_JSI9Kac_6	132.78	120.93			0.90428	0.9011	32.743	9	9	Median	0.78831	0.66858	60.474	3	3	Median	0.84315	0.97719	14.584	2	2	Median	0.96719	0.91815	2.6501	2	2	Median	0.77983	0.79738	24.654	2	2	Median	7972600000	4131200000	3841400000	1603400000	833350000	770010000	2171100000	1198300000	972750000	2283100000	1101300000	1181800000	1915100000	998290000	916840000	24960	1844	23655	156352;156353;156354;156355;156356;156357;156358;156359;156360;156361	211806;211807;211808;211809;211810;211811;211812;211813;211814;211815	211810			10	
ILFTEATR	0	Unmodified	949.52328	0.52328142	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	40.505	39.66	2	0.0061435	33991	160511_QHF_FH_JSI12i_2	63.48	11.792			1.1034	1.0385	13.669	6	0	Median	1.2628	1.0126	NaN	1	0	Median	0.93165	1.065	NaN	1	0	Median	1.1318	1.0993	15.116	2	0	Median	1.0736	1.1606	23.865	2	0	Median	1106700000	543740000	562940000	58934000	30055000	28880000	47694000	24022000	23672000	615560000	310070000	305480000	384500000	179600000	204900000	24961	1627	23656	156362;156363;156364;156365;156366;156367	211816;211817;211818;211819	211816			4	
ILFVLLR	0	Unmodified	872.58476	0.58475947	2556	Q14674	ESPL1	Separin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									6	2	2	1	1	85.056	77.183	2	1.8651E-05	43772	160513_QHF_FH_JSI10Kac_6	144.51	112.39			0.61381	0.62916	103.99	6	4	Median	1.1196	0.96647	206.04	2	2	Median	0.76661	0.8998	88.785	2	2	Median	0.84546	0.82419	NaN	1	0	Median	0.44563	0.47316	NaN	1	0	Median	302670000	163800000	138870000	56406000	26043000	30363000	183730000	98404000	85323000	32133000	19168000	12966000	30402000	20182000	10220000	24962	2556	23657	156368;156369;156370;156371;156372;156373	211820;211821;211822;211823;211824	211823			5	
ILFVSQGSEIASQGR	0	Unmodified	1590.8366	0.83657007	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	60.338	59.682	2	1.4747E-06	53075	160511_QHF_FH_JSI11i_3	132.76	106.83			0.90199	0.86168	26.455	6	1	Median	1.0549	0.90584	NaN	1	0	Median	0.67825	0.81966	NaN	1	0	Median	0.94129	0.90676	23.815	2	1	Median	1.0096	1.0721	48.575	2	0	Median	226520000	117920000	108600000	38768000	19412000	19356000	25313000	15126000	10188000	78539000	43215000	35324000	83903000	40167000	43736000	24963	5013	23658	156374;156375;156376;156377;156378;156379	211825;211826;211827;211828;211829;211830;211831;211832;211833;211834;211835;211836;211837	211826			13	
ILFYHPNEVEK	1	Unmodified	1387.7136	0.71360139	2136	P86791;P86790	CCZ1;CCZ1B	Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B	yes	no	0	0	0	0				By MS/MS	3	0			1										1	46.293	46.051	3	0.002286	39312	160511_QHF_FH_JSI12i_3	57.175	49.07			0.041851	0.04184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.041851	0.04184	NaN	1	1	Median	1533600000	1463700000	69917000	0	0	0	0	0	0	0	0	0	1533600000	1463700000	69917000	24964	2136	23659	156380	211838	211838			1	
ILGADLDVVMSLNNLDEESNKK	2	Unmodified	2416.2156	0.21555502	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	96.351	96.367	3	8.708E-06	83478	160511_QHF_FH_JSI12i_3	69.088	53.834			0.74256	0.76763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74256	0.76763	NaN	1	1	Median	23149000	9738900	13411000	0	0	0	0	0	0	0	0	0	23149000	9738900	13411000	24965	1100	23660	156381	211839	211839			1	
ILGADTSVDLEETGR	0	Unmodified	1574.7788	0.77878042	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							2	3	1	3	54.336	53.473	2	2.8615E-21	48744	160511_QHF_FH_JSI12i_1	172.92	131.05			0.95257	1.0089	8.1891	9	0	Median	1.0849	0.89582	10.524	2	0	Median	0.85168	1.0469	2.4859	3	0	Plateau	1.0738	1.0488	NaN	1	0	Median	0.95257	1.0089	8.6451	3	0	Median	9232100000	4566700000	4665400000	1297800000	512800000	784960000	3008500000	1687600000	1320900000	2130800000	974160000	1156700000	2795000000	1392100000	1402900000	24966	1263	23661	156382;156383;156384;156385;156386;156387;156388;156389;156390	211840;211841;211842;211843;211844;211845;211846;211847;211848;211849;211850;211851;211852;211853;211854;211855;211856;211857	211847			18	
ILGAGAR	0	Unmodified	656.39696	0.3969587	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	7.7978	7.5496	2	0.050547	5205	160511_QHF_FH_JSI9i_2	42.773	42.773			0.78306	0.83595	7.5405	4	0	Median	0.95916	0.81462	NaN	1	0	Median	0.72204	0.89223	NaN	1	0	Median	0.73134	0.74933	NaN	1	0	Median	0.83843	0.85784	NaN	1	0	Median	1671700000	915080000	756610000	444820000	214400000	230420000	543260000	291870000	251390000	535780000	312500000	223280000	147840000	96313000	51523000	24967	5566	23662	156391;156392;156393;156394	211858	211858			1	
ILGDLSHLLAMILLLGK	1	Oxidation (M)	1835.0954	0.095427295	367	O43731	KDELR3	ER lumen protein-retaining receptor 3	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		101.61	92.186	3	0.00077836	52935	160513_QHF_FH_JSI11Kac_6	73.166	62.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24968	367	23663	156395	211859	211859		143	1	
ILGDLSHLLAMILLLGK	1	Unmodified	1819.1005	0.10051267	367	O43731	KDELR3	ER lumen protein-retaining receptor 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.59	96.873	3	1.4048E-43	57296	160513_QHF_FH_JSI10Kac_6	183.01	159.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24969	367	23663	156396	211860	211860			1	
ILGEGSFSTVVLAR	0	Unmodified	1447.8035	0.80347903	298	O15530;Q6A1A2	PDPK1;PDPK2P	3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2	yes	no	0	0	0	0				By MS/MS	3	0			1										1	74.666	74.376	2	0.018786	64583	160511_QHF_FH_JSI12i_3	44.188	18.069			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24970	298	23664	156397	211861	211861			1	
ILGGLLSAYHLSGDSLFLR	0	Unmodified	2031.1153	0.11531111	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.464	84.744	3	0.00015791	48181	160513_QHF_FH_JSI10Kac_6	65.25	49.857			0.53682	0.64415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53682	0.64415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142280000	83360000	58916000	0	0	0	142280000	83360000	58916000	0	0	0	0	0	0	24971	5374	23665	156398	211862	211862			1	
ILGGLLSAYHLSGDSLFLRK	1	Unmodified	2159.2103	0.21027413	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.891	79.224	4	4.5502E-05	44282	160513_QHF_FH_JSI10Kac_6	108.92	83.091			1.1749	1.3786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1749	1.3786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198230000	101070000	97164000	0	0	0	198230000	101070000	97164000	0	0	0	0	0	0	24972	5374	23666	156399	211863	211863			1	
ILGGLWPTYGGVLYKPPPQR	1	Unmodified	2211.2204	0.22044489	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.101	75.858	3	1.9905E-06	42877	160513_QHF_FH_JSI10Kac_6	85.937	47.36			0.77664	0.86726	16.474	4	0	Median	1.2724	1.0698	NaN	1	0	Median	0.80297	0.95471	NaN	1	0	Median	0.75118	0.7527	NaN	1	0	Median	0.72226	0.78781	NaN	1	0	Median	318740000	159500000	159240000	59034000	23111000	35923000	207590000	109240000	98346000	35236000	17402000	17834000	16886000	9749700	7136400	24973	1406	23667	156400;156401;156402;156403	211864;211865;211866;211867;211868;211869	211869			5	
ILGGSVLHLVLALR	0	Unmodified	1459.9239	0.92386894	2718	Q15843	NEDD8	NEDD8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									15	6	4	2	3	94.966	86.708	2;3	6.6732E-61	45003	160513_QHF_FH_JSI12Kac_6	237.36	197.44			1.0447	0.92261	32.855	11	11	Median	1.0356	0.88956	23.244	4	4	Median	0.84018	0.9981	21.985	3	3	Plateau	1.6616	1.571	18.592	2	2	Median	1.1454	1.2041	12.637	2	2	Median	8213100000	3827100000	4386000000	1626800000	794790000	832030000	3777400000	1911800000	1865700000	1484400000	537100000	947260000	1324400000	583450000	740990000	24974	2718	23668	156404;156405;156406;156407;156408;156409;156410;156411;156412;156413;156414;156415;156416;156417;156418	211870;211871;211872;211873;211874;211875;211876;211877;211878;211879;211880;211881;211882;211883;211884;211885	211881			16	
ILGILALIDEGETDWK	1	Unmodified	1784.956	0.95601651	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	1	2	3	3	100.86	98.243	2;3	8.0838E-46	91739	160511_QHF_FH_JSI11i_3	250.94	204.47			0.9396	0.93186	53.889	8	3	Median	NaN	NaN	NaN	0	0	Median	0.58252	0.69037	7.0461	2	0	Median	1.1151	1.06	74.243	3	2	Plateau	0.87181	0.89161	35.667	3	1	Plateau	568760000	323470000	245290000	0	0	0	239460000	145470000	93996000	139360000	76016000	63349000	189930000	101980000	87945000	24975	4682	23669	156419;156420;156421;156422;156423;156424;156425;156426;156427	211886;211887;211888;211889;211890;211891;211892;211893;211894;211895;211896;211897;211898	211887			13	
ILGIPVIVTEQYPK	1	Unmodified	1568.9178	0.91778051	4008	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	92.535	92.035	2;3	9.8017E-05	80905	160511_QHF_FH_JSI9i_2	74.46	69.545			1.356	1.3952	22.456	7	2	Median	1.1645	1.018	22.211	2	0	Median	0.85292	1.0435	NaN	1	0	Median	1.4114	1.4581	6.2335	2	1	Median	1.388	1.5392	3.0973	2	1	Median	188390000	77702000	110690000	48940000	20451000	28489000	32820000	16883000	15937000	58142000	22939000	35203000	48492000	17429000	31063000	24976	4008	23670	156428;156429;156430;156431;156432;156433;156434	211899;211900;211901;211902;211903;211904;211905;211906;211907;211908	211903			8	
ILGLAIESQDAGIK	1	Unmodified	1426.8031	0.80314468	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	4.62	1	5						1		1	2	3	1	71.582	69.429	2;3	1.2358E-09	61574	160511_QHF_FH_JSI9i_2	143.89	111.37			0.89854	0.88305	28.839	7	2	Median	1.0166	0.85812	NaN	1	0	Median	0.69764	0.83397	8.0868	2	0	Median	0.93686	0.93142	46.684	3	2	Median	0.89854	1.002	NaN	1	0	Median	303130000	156520000	146610000	49730000	24645000	25086000	73261000	37384000	35877000	107150000	51598000	55548000	72995000	42894000	30101000	24977	101	23671	156435;156436;156437;156438;156439;156440;156441	211909;211910;211911;211912;211913;211914;211915;211916;211917;211918;211919	211913			11	
ILGLALIHQYLLDAFFTRPFYK	1	Unmodified	2638.4676	0.46755145	3210	Q9P2P5;Q76N89	HECW2;HECW1	E3 ubiquitin-protein ligase HECW2;E3 ubiquitin-protein ligase HECW1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		98.82	90.729	4	1.6414E-22	54312	160513_QHF_FH_JSI10Kac_6	144.92	123.55			0.66701	0.78062	43.879	3	0	Plateau	0.90345	0.76707	NaN	1	0	Median	0.66701	0.78062	NaN	1	0	Median	0.36847	0.36194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	361610000	219020000	142590000	144290000	71296000	72997000	196770000	135860000	60916000	20541000	11863000	8677700	0	0	0	24978	3210	23672	156442;156443;156444	211920;211921;211922	211922			3	
ILGLAPSR	0	Unmodified	825.50724	0.50723743	5417	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		36.857	35.962	2	0.0043669	29358	160511_QHF_FH_JSI9i_3	68.915	35.177			0.98722	1.059	25.485	6	1	Median	1.4598	1.2036	7.5421	2	0	Median	0.90373	1.0795	13.283	2	0	Median	0.79329	0.78083	31.423	2	1	Median	NaN	NaN	NaN	0	0	Median	1378900000	709840000	669050000	367830000	158790000	209040000	458310000	249100000	209210000	552750000	301950000	250790000	0	0	0	24979	5417	23673	156445;156446;156447;156448;156449;156450	211923;211924;211925;211926;211927	211925			5	
ILGLGDLGCNGMGIPVGK	1	Unmodified	1769.9168	0.916811	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.944	92.496	2	0.062991	81272	160511_QHF_FH_JSI11i_2	42.556	27.865			0.79068	0.80198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79068	0.80198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19590000	13251000	6339300	0	0	0	0	0	0	19590000	13251000	6339300	0	0	0	24980	1616	23674	156451	211928	211928			1	
ILGLGDLGVYGMGIPVGK	1	Unmodified	1757.975	0.97497781	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.63	101.56	2	5.2446E-07	89389	160511_QHF_FH_JSI9i_2	92.906	73.064			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24981	1225	23675	156452	211929	211929			1	
ILGLLDAYLK	1	Unmodified	1117.6747	0.67469669	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	6.23		8	8						7	6	6	6	5	92.744	89.985	2	1.3212E-09	43739	160513_QHF_FH_JSI9Kac_6	133.23	80.518			0.62074	0.62032	422.67	20	20	Median	1.0175	0.86554	462.57	6	6	Median	0.80278	0.95838	501.68	4	4	Median	0.034546	0.032579	441	5	5	Median	11.154	11.811	425.93	5	5	Median	7535800000	3851200000	3684500000	1487300000	702040000	785260000	1699800000	897730000	802050000	2562600000	1405200000	1157300000	1786100000	846240000	939910000	24982	1284	23676	156453;156454;156455;156456;156457;156458;156459;156460;156461;156462;156463;156464;156465;156466;156467;156468;156469;156470;156471;156472;156473;156474;156475	211930;211931;211932;211933;211934;211935;211936;211937;211938;211939;211940;211941;211942;211943;211944;211945;211946;211947;211948;211949;211950;211951;211952;211953;211954;211955;211956;211957;211958;211959;211960	211953			31	
ILGLLDAYLKTR	1	Acetyl (K)	1416.8341	0.83405088	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	89.688	82.13	2;3	0.00061976	43423	160513_QHF_FH_JSI12Kac_6	89.032	54.5			3.7538	3.7915	120.77	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6654	1.6142	NaN	1	1	Median	8.4608	8.9059	NaN	1	1	Median	231380000	142520000	88862000	0	0	0	117010000	117010000	0	45683000	17462000	28222000	68682000	8041800	60641000	24983	1284	23677	156476;156477;156478;156479	211961;211962;211963;211964	211962	1208		4	
ILGPAESDEFLAR	0	Unmodified	1416.7249	0.72489436	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	63.873	62.95	2	0.00023184	54088	160511_QHF_FH_JSI12i_2	83.397	60.043			1.0077	1.0369	2.8339	3	0	Median	1.1956	1.0369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0077	1.0347	NaN	1	0	Median	0.97405	1.0879	NaN	1	0	Median	379330000	202530000	176810000	97710000	50132000	47579000	0	0	0	159830000	85518000	74307000	121800000	66876000	54920000	24984	2947	23678	156480;156481;156482	211965;211966;211967;211968;211969;211970	211966			6	
ILGPFHKR	1	Acetyl (K)	1008.5869	0.58688473	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.79	35.149	3	0.031208	19192	160513_QHF_FH_JSI11Kac_6	39.022	32.983			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8192000	8192000	0	0	0	0	0	0	0	8192000	8192000	0	0	0	0	24985	4989	23679	156483	211971	211971			1	
ILGPGLNK	1	Unmodified	810.49634	0.49633839	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.6	4	4	4				1	3	4	4	5	6	5	33.759	29.533	2	0.00069002	24850	160511_QHF_FH_JSI12i_3	99.919	55.309			1.0361	1.061	17.753	20	0	Median	1.2053	1.0003	19.347	4	0	Median	0.94389	1.1247	18.858	5	0	Median	1.0677	1.0649	16.847	6	0	Median	0.99155	1.0361	19.15	5	0	Median	21201000000	9214100000	11987000000	3154600000	1199500000	1955200000	4065600000	2000900000	2064700000	7024700000	3091700000	3933000000	6955700000	2922000000	4033700000	24986	2036	23680	156484;156485;156486;156487;156488;156489;156490;156491;156492;156493;156494;156495;156496;156497;156498;156499;156500;156501;156502;156503	211972;211973;211974;211975;211976;211977;211978;211979;211980;211981;211982;211983;211984;211985;211986;211987;211988;211989;211990;211991;211992;211993;211994;211995;211996;211997;211998;211999;212000;212001;212002	212001			31	
ILGPQGNTIK	1	Unmodified	1039.6026	0.60259438	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.29	4	4	4				3	4	1	5	5	5	5	32.337	27.919	2	7.378E-05	24012	160511_QHF_FH_JSI11i_3	91.853	36.177			1.175	1.1648	16.904	19	1	Median	1.3154	1.1042	13.983	4	0	Median	1.0524	1.3001	24.511	5	1	Median	1.3104	1.2449	9.5215	5	0	Median	0.92371	1.0233	14.916	5	0	Median	4461100000	2324100000	2137000000	747220000	341360000	405860000	1067100000	564230000	502840000	1274300000	671290000	602980000	1372600000	747240000	625330000	24987	2255	23681	156504;156505;156506;156507;156508;156509;156510;156511;156512;156513;156514;156515;156516;156517;156518;156519;156520;156521;156522;156523	212003;212004;212005;212006;212007;212008;212009;212010;212011;212012;212013;212014;212015;212016;212017	212003			15	
ILGQEGDASYLASEISTWDGVIVTPSEK	1	Unmodified	2964.4604	0.46041298	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	101.62	101.49	3	3.7897E-18	89650	160511_QHF_FH_JSI9i_1	107.01	100.58			1.3308	1.1631	8.8207	3	1	Median	1.3586	1.1086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3308	1.3154	NaN	1	1	Median	1.0878	1.1631	NaN	1	0	Median	523580000	225900000	297680000	126190000	51806000	74381000	0	0	0	135890000	44270000	91622000	261500000	129820000	131680000	24988	2324	23682	156524;156525;156526	212018;212019	212019			2	
ILGRNDDDSSEAMNDILAQVATNTETSK	1	Unmodified	3007.404	0.40403709	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		88.903	88.654	3	6.8831E-13	79195	160511_QHF_FH_JSI11i_3	87.339	80.905			0.85682	0.94214	26.177	2	2	Median	NaN	NaN	NaN	0	0	Median	0.89492	1.1337	NaN	1	1	Median	0.82034	0.78294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29998000	17037000	12961000	0	0	0	11821000	6769100	5051800	18178000	10268000	7909500	0	0	0	24989	369	23683	156527;156528	212020;212021	212020			2	
ILGSEGEPAFR	0	Unmodified	1174.5982	0.59823728	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.946	40.48	2	0.00011881	34779	160511_QHF_FH_JSI11i_2	96.948	79.708			0.99997	1.0168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99997	1.0168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	273510000	112280000	161230000	0	0	0	0	0	0	273510000	112280000	161230000	0	0	0	24990	3733	23684	156529	212022	212022			1	
ILGSGISSSSVLHGMVFK	1	Unmodified	1817.971	0.97095506	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.55		4	9						9	6	6	5	5	79.406	75.522	2;3	9.9711E-168	39902	160513_QHF_FH_JSI10Kac_6	339.28	291.72			0.91242	0.9408	20.718	22	5	Median	1.1977	1.0387	17.363	6	2	Median	0.83091	0.98767	28.353	6	2	Median	0.92054	0.88383	9.3438	5	0	Median	0.79796	0.80929	17.952	5	1	Median	27778000000	14348000000	13430000000	7694900000	3622300000	4072600000	9972400000	5448500000	4523900000	6670800000	3540200000	3130600000	3440300000	1737400000	1702900000	24991	1721	23685	156530;156531;156532;156533;156534;156535;156536;156537;156538;156539;156540;156541;156542;156543;156544;156545;156546;156547;156548;156549;156550;156551	212023;212024;212025;212026;212027;212028;212029;212030;212031;212032;212033;212034;212035;212036;212037;212038;212039;212040;212041;212042;212043;212044;212045;212046;212047;212048;212049;212050;212051;212052;212053;212054;212055;212056;212057;212058;212059;212060;212061;212062;212063;212064;212065;212066;212067;212068	212068			46	
ILGSGISSSSVLHGMVFK	1	Oxidation (M)	1833.9659	0.96586969	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			10						4	3	4	5	2	68.83	65.28	2;3	1.6151E-06	58499	160511_QHF_FH_JSI11i_3	90.614	60.408			0.96458	0.93854	13.193	12	4	Median	1.1945	0.95841	7.5211	3	0	Plateau	0.85281	1.0132	22.154	4	1	Median	1.0106	0.90683	6.2348	3	2	Plateau	0.84745	0.89147	8.3488	2	1	Median	3480600000	1753600000	1726900000	970260000	437590000	532670000	1165500000	615060000	550400000	933410000	480690000	452710000	411420000	220270000	191150000	24992	1721	23685	156552;156553;156554;156555;156556;156557;156558;156559;156560;156561;156562;156563;156564;156565	212069;212070;212071;212072;212073;212074;212075;212076;212077;212078;212079;212080;212081;212082;212083;212084;212085;212086;212087;212088;212089;212090;212091;212092;212093;212094;212095	212073		1399	27	
ILGSGISSSSVLHGMVFKK	2	Unmodified	1946.0659	0.065918081	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			4						4	2	3	3		71.717	67.265	3;4	2.7922E-10	57586	160511_QHF_FH_JSI10i_3	124.68	117.95			0.45967	0.52488	66.009	8	5	Median	0.41342	0.3475	87.107	2	1	Median	0.59248	0.68907	28.099	3	1	Plateau	0.33525	0.31513	93.004	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2000300000	1325800000	674480000	629780000	459480000	170300000	664900000	397220000	267680000	705640000	469130000	236510000	0	0	0	24993	1721	23686	156566;156567;156568;156569;156570;156571;156572;156573	212096;212097;212098;212099;212100;212101;212102;212103;212104;212105;212106;212107;212108;212109	212101			14	
ILGSGISSSSVLHGMVFKK	2	Acetyl (K)	1988.0765	0.076482767	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			79.284	73.643	3	0.00058628	40201	160513_QHF_FH_JSI10Kac_6	75.564	55.516			1.237	1.4593	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.237	1.4593	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101830000	39790000	62036000	0	0	0	101830000	39790000	62036000	0	0	0	0	0	0	24994	1721	23686	156574	212110	212110	1733		1	
ILGSLYAASEDQEK	1	Unmodified	1522.7515	0.75150304	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	3	3	47.919	46.855	2	3.7191E-13	41499	160511_QHF_FH_JSI11i_3	126.19	89.003			0.77102	0.87079	32.085	6	4	Median	1.042	0.91288	56.997	2	2	Median	0.67886	0.84348	NaN	1	0	Median	0.87569	0.89897	NaN	1	0	Median	0.80021	0.91484	42.978	2	2	Median	345330000	164040000	181290000	99384000	41753000	57632000	48352000	21713000	26639000	97081000	41522000	55559000	100510000	59050000	41463000	24995	3115	23687	156575;156576;156577;156578;156579;156580;156581;156582;156583	212111;212112;212113;212114;212115;212116;212117;212118;212119;212120	212112			10	
ILGTAGTEEGQK	1	Unmodified	1202.6143	0.61428128	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.586	16.31	2	0.0015767	14011	160511_QHF_FH_JSI12i_1	74.533	42.773			0.40803	0.40197	51.768	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.91614	1.0953	NaN	1	1	Median	0.5639	0.53014	NaN	1	1	Median	0.39331	0.40197	NaN	1	1	Median	200980000	128210000	72766000	0	0	0	67603000	39662000	27942000	63489000	43330000	20159000	69887000	45222000	24665000	24996	2266	23688	156584;156585;156586	212121;212122;212123	212122			3	
ILGVGISTGGR	0	Unmodified	1028.5978	0.59784335	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	12.8	5.63			1						3	2		1	1	74.482	67.236	2	0.051529	36644	160511_QHF_FH_JSI9i_3	43.185	23.046			0.87766	0.82549	43.578	4	1	Median	0.74038	0.61725	59.105	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1542	1.096	NaN	1	0	Median	0.70007	0.72687	NaN	1	0	Median	181520000	108490000	73037000	134700000	86630000	48066000	0	0	0	27969000	12112000	15857000	18857000	9743700	9113800	24997	5485	23689	156587;156588;156589;156590	212124;212125	212124			2	
ILHAELQQYLGNPQESLDR	0	Unmodified	2223.1284	0.128395	3787	Q8WVT3	TRAPPC12	Trafficking protein particle complex subunit 12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	69.719	69.62	3	5.4316E-09	60236	160511_QHF_FH_JSI12i_3	106.75	97.218			1.7965	1.7708	32.165	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.185	1.1418	21.287	2	2	Median	1.8688	1.8681	NaN	1	1	Median	182910000	76007000	106900000	0	0	0	0	0	0	128620000	60603000	68021000	54284000	15405000	38879000	24998	3787	23690	156591;156592;156593	212126;212127;212128	212128			3	
ILHCLGLAEEIQK	1	Unmodified	1522.8177	0.81774888	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.92	3.66		2	9						1		2	5	5	55.844	55.489	2;3	3.9674E-05	48940	160511_QHF_FH_JSI11i_3	105.65	93.673			0.89144	0.92303	71.502	11	9	Median	NaN	NaN	NaN	0	0	Median	1.0604	1.2302	121.26	2	1	Median	0.77871	0.79334	70.911	5	4	Median	1.1812	1.2058	62.396	4	4	Median	1816300000	850310000	965970000	0	0	0	130650000	72333000	58313000	737970000	403580000	334390000	947660000	374400000	573270000	24999	1791	23691	156594;156595;156596;156597;156598;156599;156600;156601;156602;156603;156604;156605	212129;212130;212131;212132;212133;212134;212135;212136;212137;212138;212139;212140;212141	212129			13	
ILHDFYIEK	1	Unmodified	1176.6179	0.61791009	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.12	46.14	3	0.0005244	39470	160511_QHF_FH_JSI11i_2	65.627	47.02			1.1133	1.0726	31.914	4	1	Linear	0.63198	0.55969	NaN	1	0	Median	0.40005	0.48062	NaN	1	1	Median	0.94044	0.94783	NaN	1	0	Median	0.7687	0.82429	NaN	1	0	Median	197950000	98765000	99188000	32798000	16417000	16381000	53119000	30736000	22383000	71700000	32369000	39331000	40336000	19243000	21093000	25000	4753	23692	156606;156607;156608;156609	212142;212143;212144;212145;212146;212147	212145			6	
ILHENTQTDK	1	Unmodified	1197.599	0.59896556	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	6.9403	6.71	2	0.00092178	4840	160511_QHF_FH_JSI10i_2	81.548	29.693			0.99539	1.0736	54.289	5	3	Median	NaN	NaN	NaN	0	0	Median	0.55584	0.68953	NaN	1	1	Median	0.6529	0.63639	91.625	2	2	Median	1.0477	1.1071	4.3463	2	0	Median	169920000	105550000	64376000	0	0	0	28117000	19564000	8553100	52235000	33257000	18979000	89569000	52725000	36844000	25001	3141	23693	156610;156611;156612;156613;156614;156615	212148;212149;212150;212151;212152;212153	212152			6	
ILHGFKNQVGDENWR	1	Acetyl (K)	1853.9173	0.91728001	3914	Q92973	TNPO1	Transportin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		61.634	52.362	2;3	0.0014903	28738	160513_QHF_FH_JSI10Kac_6	57.794	47.135			0.66939	0.70956	97.887	2	0	Median	NaN	NaN	NaN	0	0	Median	1.234	1.4177	NaN	1	0	Median	0.3631	0.35513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37683000	24036000	13647000	0	0	0	15288000	7092200	8196000	22395000	16944000	5451200	0	0	0	25002	3914	23694	156616;156617;156618	212154;212155;212156;212157;212158	212157	3000		5	
ILHGLGFTPAMQR	0	Unmodified	1439.7707	0.77073911	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		54.412	54.412	3	0.0046793	30058	160513_QHF_FH_JSI10Kac_6	49.28	36.513			0.59265	0.55428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59265	0.55428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38051000	28280000	9771600	0	0	0	0	0	0	38051000	28280000	9771600	0	0	0	25003	5279	23695	156619;156620	212159;212160	212160			2	
ILHIEGGEVSGTIDDSIR	0	Unmodified	1909.9745	0.97452012	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.952	61.671	3	0.00010906	53147	160511_QHF_FH_JSI12i_3	78.95	69.667			1.2283	1.2362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2283	1.2362	NaN	1	1	Median	41970000	20654000	21316000	0	0	0	0	0	0	0	0	0	41970000	20654000	21316000	25004	5485	23696	156621	212161	212161			1	
ILHIKQDER	1	Acetyl (K)	1192.6564	0.65642086	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		32.101	22.819	3	0.0029997	12922	160513_QHF_FH_JSI11Kac_6	56.404	37.448			0.29652	0.28158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29652	0.28158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17396000	15141000	2255100	0	0	0	0	0	0	17396000	15141000	2255100	0	0	0	25005	1388	23697	156622	212162	212162	1343		1	
ILHILGSIR	0	Unmodified	1020.6444	0.64439961	5143	Q9NZ32	ACTR10	Actin-related protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	60.271	50.982	3	0.0027599	27002	160513_QHF_FH_JSI9Kac_6	51.276	22.549			1.0586	0.65923	32.35	4	1	Linear	1.1494	0.98158	NaN	1	0	Median	0.56442	0.66905	NaN	1	0	Median	1.5503	1.4701	NaN	1	1	Median	0.975	1.0632	NaN	1	0	Median	120990000	68859000	52132000	25174000	10468000	14705000	66915000	43505000	23410000	17834000	9074300	8760100	11067000	5811300	5256100	25006	5143	23698	156623;156624;156625;156626;156627	212163;212164;212165;212166;212167;212168	212164			6	
ILHKALEAAQQEK	2	Unmodified	1477.8253	0.8252771	4554	Q9BYX2	TBC1D2	TBC1 domain family member 2A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.928	47.928	4	0.027201	42680	160511_QHF_FH_JSI11i_3	27.862	5.2839			1.0672	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0672	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2569800000	1337500000	1232400000	0	0	0	0	0	0	2569800000	1337500000	1232400000	0	0	0	25007	4554	23699	156628	212169	212169			1	
ILHKLLQNGNSPAEVAK	2	Acetyl (K)	1873.0421	0.042146171	5747	Q9Y6Q9	NCOA3	Nuclear receptor coactivator 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	56.753	47.404	3	0.00029587	26107	160513_QHF_FH_JSI10Kac_6	83.751	73.554			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47263000	20288000	26976000	5392500	0	5392500	18766000	10867000	7899100	11439000	3701400	7737900	11666000	5719800	5946300	25008	5747	23700	156629;156630;156631;156632;156633;156634;156635	212170;212171;212172;212173;212174;212175;212176;212177	212177	3547		8	
ILHLLGQEGPK	1	Unmodified	1203.6976	0.69755739	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.5		6	14						3	5	7	6	5	42.656	41.426	2;3	2.2333E-06	36380	160511_QHF_FH_JSI10i_2	110.38	106.04			0.88488	0.74043	78.831	21	20	Median	0.88488	0.74043	93.192	5	4	Median	0.43247	0.52727	84.537	7	7	Median	1.4863	1.3966	87.359	5	5	Median	1.1095	1.1334	67.478	4	4	Median	8043200000	3557200000	4486000000	647820000	245130000	402690000	1597900000	790700000	807190000	1797700000	829460000	968230000	3999800000	1691900000	2307900000	25009	5708	23701	156636;156637;156638;156639;156640;156641;156642;156643;156644;156645;156646;156647;156648;156649;156650;156651;156652;156653;156654;156655;156656;156657;156658	212178;212179;212180;212181;212182;212183;212184;212185;212186;212187;212188;212189;212190;212191;212192;212193;212194;212195;212196;212197;212198;212199;212200;212201;212202;212203;212204	212194			27	
ILHLLTQEALSIHGVK	1	Unmodified	1771.0356	0.03560423	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	4	3	2	2	72.132	68.636	3;4	6.6994E-08	59955	160511_QHF_FH_JSI12i_3	153.48	142.21			0.093099	0.090233	67.526	8	8	Linear	0.32802	0.27456	18.996	2	2	Median	0.30952	0.35398	49.957	2	2	Median	0.26111	0.24791	146.07	2	2	Median	0.15639	0.15822	30.746	2	2	Median	1243900000	1027900000	216020000	124640000	97873000	26766000	241360000	189950000	51404000	210270000	183460000	26809000	667620000	556580000	111040000	25010	1837	23702	156659;156660;156661;156662;156663;156664;156665;156666;156667;156668;156669	212205;212206;212207;212208;212209;212210;212211;212212;212213;212214;212215;212216;212217;212218;212219	212218			15	
ILHLPTSWDWR	0	Unmodified	1422.7408	0.74081919	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			16						4	9	4	3	4	82.326	79.684	2;3	4.2354E-06	71828	160511_QHF_FH_JSI11i_3	90.685	86.533			1.0481	1.0459	20.616	17	2	Median	1.3539	1.1071	24.847	7	2	Median	0.85614	1.0041	9.1018	4	0	Median	1.1409	1.0459	12.798	3	0	Median	0.90419	0.92797	27.231	3	0	Median	962540000	484360000	478180000	182250000	84735000	97519000	292450000	152130000	140320000	331910000	168190000	163710000	155920000	79296000	76627000	25011	1806	23703	156670;156671;156672;156673;156674;156675;156676;156677;156678;156679;156680;156681;156682;156683;156684;156685;156686;156687;156688;156689	212220;212221;212222;212223;212224;212225;212226;212227;212228;212229;212230;212231;212232;212233;212234;212235;212236;212237;212238;212239;212240;212241	212220			19	
ILHNDPEVEK	1	Unmodified	1192.6088	0.60880197	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS				2	0		1								1				14.934	14.216	3	0.0025026	11643	160511_QHF_FH_JSI9i_2	56.359	37.614			1.9129	1.6135	NaN	1	1	Median	1.9129	1.6135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53420000	21083000	32337000	53420000	21083000	32337000	0	0	0	0	0	0	0	0	0	25012	733;3526	23704	156690	212242	212242			1	
ILHQHLGAPEER	0	Unmodified	1398.7368	0.73679645	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	17.726	16.998	3;4	9.0189E-05	14204	160511_QHF_FH_JSI10i_3	59.898	46.219			2.0244	1.6269	60.678	3	1	Median	2.0244	1.6269	NaN	1	1	Median	0.6637	0.77769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.576	2.5905	NaN	1	0	Median	110380000	49572000	60807000	24783000	8235600	16547000	43598000	27887000	15712000	0	0	0	41998000	13450000	28548000	25013	5161	23705	156691;156692;156693	212243;212244;212245;212246	212244			4	
ILHSILLNGETR	0	Unmodified	1364.7776	0.77759863	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				47.289	45.679	3	0.0055884	37555	160511_QHF_FH_JSI9i_3	35.077	23.019			0.43095	0.34394	NaN	1	1	Median	0.43095	0.34394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48986000	32624000	16362000	48986000	32624000	16362000	0	0	0	0	0	0	0	0	0	25014	647	23706	156694	212247	212247			1	
ILHTAWHPK	1	Unmodified	1101.6083	0.60834846	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			6							2	1	1	2	20.043	19.556	3	0.0022462	16467	160511_QHF_FH_JSI9i_3	53.751	33.761			0.96416	1.0722	79.81	5	1	Median	1.8872	1.5569	NaN	1	1	Median	0.92596	1.0722	NaN	1	0	Median	0.96416	0.9024	NaN	1	0	Median	1.4951	1.5206	151.55	2	0	Median	328270000	138680000	189590000	106520000	44198000	62320000	61585000	36014000	25570000	16711000	8081600	8629600	143460000	50387000	93071000	25015	2052	23707	156695;156696;156697;156698;156699;156700	212248;212249;212250;212251;212252	212250			3	
ILHTLLASGEDALDFTQESEPSYISDVGPPGR	0	Unmodified	3413.6627	0.66269462	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	99.632	99.569	3	3.9916E-23	88536	160511_QHF_FH_JSI11i_3	105.02	102.85			1.2048	1.2898	56.996	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2048	1.4079	32.967	2	0	Median	1.6284	1.4919	NaN	1	0	Median	0.46424	0.49082	NaN	1	1	Median	83083000	35873000	47210000	0	0	0	29041000	12223000	16818000	40834000	13459000	27375000	13207000	10191000	3016200	25016	3503	23708	156701;156702;156703;156704;156705;156706	212253;212254;212255;212256;212257;212258;212259;212260;212261	212253			9	
ILHTLLTLVNK	1	Unmodified	1263.7915	0.79145778	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	69.355	68.27	2;3	0.00054395	60182	160511_QHF_FH_JSI11i_3	64.82	54.867			0.22012	0.17894	NaN	1	1	Median	0.22012	0.17894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47675000	46272000	1402900	17904000	16501000	1402900	11641000	11641000	0	0	0	0	18130000	18130000	0	25017	1193	23709	156707;156708;156709;156710;156711	212262;212263;212264;212265;212266	212262			5	
ILHTYYK	1	Unmodified	936.5069	0.50690308	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	5.86		1	12						5	5	4	4	5	19.137	16.497	2;3	0.0022412	13495	160511_QHF_FH_JSI11i_3	81.297	50.007			1.0628	0.98916	74.297	17	12	Median	1.1618	0.98916	49.676	5	3	Median	1.0503	1.2107	65.899	4	1	Median	0.56689	0.56093	85.128	4	4	Median	1.0429	1.0776	111.95	4	4	Median	4162600000	1956900000	2205700000	581410000	197950000	383460000	687950000	351610000	336350000	1364600000	735050000	629570000	1528600000	672280000	856360000	25018	40	23710	156712;156713;156714;156715;156716;156717;156718;156719;156720;156721;156722;156723;156724;156725;156726;156727;156728;156729	212267;212268;212269;212270;212271;212272;212273;212274;212275;212276;212277;212278;212279;212280;212281;212282;212283;212284;212285;212286;212287	212269			21	
ILHTYYKFDYK	2	Acetyl (K)	1531.7711	0.77111627	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	1	0	0	1			By MS/MS		16	0									1			1		64.42	54.734	2	9.8122E-05	29628	160513_QHF_FH_JSI11Kac_6	98.048	57.697			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9322500	9322500	0	0	0	0	0	0	0	9322500	9322500	0	0	0	0	25019	40	23711	156730	212288;212289	212289	9;11		2	
ILHVDNHIGISIAGLTADAR	0	Unmodified	2085.1331	0.13308644	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	79.896	78.821	3;4	5.3496E-06	65924	160511_QHF_FH_JSI10i_3	76.155	71.445			0.81366	0.76596	55.078	4	1	Median	0.92711	0.76596	9.4358	2	1	Median	0.76683	0.87464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.2588	0.26945	NaN	1	0	Median	137470000	89357000	48116000	44851000	27528000	17324000	34750000	20492000	14257000	0	0	0	57872000	41336000	16535000	25020	1264	23712	156731;156732;156733;156734	212290;212291;212292;212293;212294;212295	212292			6	
ILHVFHGLLPGFLVK	1	Unmodified	1689.013	0.013018295	3601	Q8NBP7	PCSK9	Proprotein convertase subtilisin/kexin type 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	84.959	77.086	3;4	2.6101E-05	42625	160513_QHF_FH_JSI11Kac_6	99.844	88.582			0.53702	0.58385	24.001	6	6	Median	0.53702	0.45021	8.2254	2	2	Median	0.48919	0.58385	0.6501	2	2	Median	0.86992	0.82593	NaN	1	1	Median	0.63794	0.68557	NaN	1	1	Median	2147400000	1273000000	874380000	389850000	237740000	152100000	1375800000	819170000	556630000	318060000	172770000	145290000	63682000	43333000	20349000	25021	3601	23713	156735;156736;156737;156738;156739;156740;156741	212296;212297;212298;212299;212300;212301;212302	212297			7	
ILHVNGFNGEGGEEDPQAAR	0	Unmodified	2108.9875	0.98754442	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.606	41.495	3	2.4148E-33	36572	160511_QHF_FH_JSI11i_3	114.55	109.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25022	2048	23714	156742;156743	212303;212304	212303			2	
ILIAFISYK	1	Unmodified	1066.6427	0.64266828	3711	Q8TCT8	SPPL2A	Signal peptide peptidase-like 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	85.461	80.391	2	0.0001215	74564	160511_QHF_FH_JSI12i_3	91.853	81.439			0.92523	0.9265	16.335	7	0	Median	1.0028	0.83537	14.643	2	0	Median	0.87018	1.0035	17.212	2	0	Median	0.89268	0.85128	NaN	1	0	Median	1.0577	1.0847	15.081	2	0	Median	2354600000	1200100000	1154500000	709290000	401180000	308110000	907980000	464490000	443490000	455100000	225680000	229420000	282200000	108750000	173450000	25023	3711	23715	156744;156745;156746;156747;156748;156749;156750	212305;212306;212307;212308;212309;212310;212311;212312;212313;212314;212315	212311			11	
ILIANTGMDTDK	1	Oxidation (M)	1306.6439	0.64386684	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	32.563	31.96	2	1.5732E-06	40081	160511_QHF_FH_JSI9i_1	105.86	72.971			0.93438	0.89607	7.5376	4	0	Median	0.99798	0.80359	NaN	1	0	Median	0.74258	0.85808	NaN	1	0	Median	0.97341	0.93574	NaN	1	0	Median	0.89693	0.9405	NaN	1	0	Median	1225000000	578490000	646490000	261470000	100290000	161180000	329210000	161770000	167440000	331080000	165530000	165560000	303210000	150900000	152310000	25024	2090	23716	156751;156752;156753;156754;156755	212316;212317;212318;212319;212320;212321;212322;212323	212323		1751	8	
ILIANTGMDTDK	1	Unmodified	1290.649	0.64895222	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22	4	1	2			3				3	3	2	2	48.654	45.15	2	1.3644E-22	40681	160511_QHF_FH_JSI11i_1	201.33	156.98			0.90942	0.91157	14.421	10	2	Median	0.9723	0.81554	23.444	3	1	Plateau	0.75644	0.90997	13.754	3	1	Median	0.90665	0.8721	6.0783	2	0	Median	0.87699	0.93578	3.524	2	0	Median	9589100000	4956100000	4633000000	2174000000	1214000000	960060000	2469300000	1475900000	993470000	2519800000	1191200000	1328600000	2425900000	1075100000	1350800000	25025	2090	23716	156756;156757;156758;156759;156760;156761;156762;156763;156764;156765	212324;212325;212326;212327;212328;212329;212330;212331;212332;212333;212334;212335;212336;212337;212338;212339	212325			16	
ILIANTGMDTDKIK	2	Acetyl (K)	1573.8385	0.83854391	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			73.753	63.16	2	0.017232	33699	160513_QHF_FH_JSI10Kac_4	60.434	24.474			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1034600	1034600	0	0	0	0	1034600	1034600	0	0	0	0	0	0	0	25026	2090	23717	156766	212340	212340	2174		1	
ILIDTGEPAIPEYISCLK	1	Unmodified	2031.0598	0.05982965	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		99.425	99.419	2	7.898E-05	90193	160511_QHF_FH_JSI10i_1	90.731	73.789			0.90371	0.96321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90371	0.96321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7892000	6187200	1704800	0	0	0	7892000	6187200	1704800	0	0	0	0	0	0	25027	2858	23718	156767;156768	212341;212342	212342			2	
ILIEDSDQNLK	1	Unmodified	1286.6718	0.67179615	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	43.686	43.028	2	4.5855E-07	38786	160511_QHF_FH_JSI11i_1	116.37	74.084			1.1159	1.1504	23.792	5	2	Median	1.1934	0.9774	NaN	1	0	Median	0.99207	1.1783	NaN	1	0	Median	1.1833	1.1504	NaN	1	0	Median	0.84827	0.89265	39.26	2	2	Median	725220000	384160000	341060000	106070000	54779000	51289000	174470000	82241000	92227000	145320000	65026000	80289000	299370000	182120000	117250000	25028	179	23719	156769;156770;156771;156772;156773	212343;212344;212345;212346;212347;212348;212349	212343			7	
ILIEDWK	1	Unmodified	915.50657	0.50656873	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	58.146	57.316	2	0.010636	49514	160511_QHF_FH_JSI11i_2	73.975	47.373			0.78753	0.81091	11.746	5	0	Median	1.0427	0.88463	NaN	1	0	Median	0.69054	0.84363	NaN	1	0	Median	0.79327	0.78815	4.0256	2	0	Median	0.60475	0.65261	NaN	1	0	Median	962740000	524050000	438690000	164580000	80327000	84254000	192200000	111350000	80856000	372330000	203380000	168950000	233630000	129000000	104630000	25029	1050	23720	156774;156775;156776;156777;156778	212350;212351;212352;212353;212354;212355;212356;212357	212354			8	
ILIEDWKK	2	Unmodified	1043.6015	0.60153174	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		8	8						4	3	6	5	6	47.378	44.851	2;3	0.00032022	38344	160511_QHF_FH_JSI11i_2	103.56	74.09			1.4204	1.3657	65.004	20	15	Median	1.4017	1.2075	48.258	3	1	Median	1.6482	1.9656	80.794	6	6	Median	1.4398	1.3521	60.729	5	3	Median	1.1355	1.2232	71.012	6	5	Median	7719600000	3755300000	3964300000	461180000	210480000	250700000	1263200000	631480000	631760000	2242100000	1030200000	1211900000	3753100000	1883100000	1869900000	25030	1050	23721	156779;156780;156781;156782;156783;156784;156785;156786;156787;156788;156789;156790;156791;156792;156793;156794;156795;156796;156797;156798	212358;212359;212360;212361;212362;212363;212364;212365;212366;212367;212368;212369;212370;212371;212372;212373;212374;212375;212376;212377;212378;212379;212380;212381;212382;212383;212384;212385;212386;212387;212388;212389;212390;212391;212392;212393	212376			36	
ILIEENRK	1	Unmodified	1013.5869	0.58694431	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			4								1	2	1	16.626	16.37	2;3	0.0042402	13410	160511_QHF_FH_JSI11i_3	43.083	12.009			1.1255	1.1493	7.4514	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1035	1.2304	NaN	1	0	Median	1.1255	1.0743	3.2459	2	0	Median	1.1521	1.2015	NaN	1	1	Median	988050000	461490000	526560000	0	0	0	39960000	24453000	15507000	423330000	196150000	227180000	524760000	240880000	283880000	25031	430	23722	156799;156800;156801;156802	212394;212395;212396;212397;212398	212396			5	
ILIENGVAER	0	Unmodified	1112.619	0.61897272	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.4	0.49	3	2								2	1	1	1	37.673	36.939	2	0.042509	32144	160511_QHF_FH_JSI9i_2	37.191	12.297			0.82514	0.79305	24.328	5	0	Median	1.108	0.92443	21.678	2	0	Median	0.55118	0.64073	NaN	1	0	Median	0.82514	0.83422	NaN	1	0	Median	0.54893	0.57741	NaN	1	0	Median	266410000	158010000	108400000	75064000	38472000	36592000	49648000	32528000	17120000	111870000	66638000	45235000	29824000	20376000	9448100	25032	4623	23723	156803;156804;156805;156806;156807	212399	212399			1	
ILIEQNRK	1	Unmodified	1012.6029	0.60292873	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		14.232	13.623	2;3	0.0044262	10972	160511_QHF_FH_JSI11i_3	42.599	2.5314			1.2362	1.1165	18.468	6	1	Median	1.5731	1.265	30.556	2	1	Median	0.87493	1.0041	11.503	2	0	Median	1.2776	1.2028	7.0389	2	0	Median	NaN	NaN	NaN	0	0	Median	845960000	354030000	491930000	228120000	89493000	138630000	226450000	118340000	108100000	391390000	146190000	245200000	0	0	0	25033	140	23724	156808;156809;156810;156811;156812;156813	212400;212401;212402;212403;212404	212401			5	
ILIFSSR	0	Unmodified	834.49634	0.49633839	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	4	2	2	2	53.34	51.521	2	0.0045361	27399	160513_QHF_FH_JSI9Kac_6	79.146	26.846			0.76588	0.76501	9.579	9	1	Median	0.95813	0.76501	5.142	3	1	Plateau	0.61125	0.73446	5.4925	2	0	Median	0.88173	0.86084	15.214	2	0	Median	0.69005	0.71785	2.3125	2	0	Median	1887200000	1007800000	879420000	767080000	377710000	389370000	384360000	218420000	165940000	358480000	203080000	155400000	377300000	208600000	168710000	25034	3723	23725	156814;156815;156816;156817;156818;156819;156820;156821;156822;156823	212405;212406;212407;212408;212409;212410;212411	212410			7	
ILIHSVSLSSSPNIMLLHR	0	Unmodified	2116.1827	0.18267917	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			78.466	72.718	3;4	2.0868E-104	39653	160513_QHF_FH_JSI10Kac_6	237.01	223.78			0.71317	0.84699	4.4474	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71317	0.84699	4.4474	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	684160000	405540000	278620000	0	0	0	684160000	405540000	278620000	0	0	0	0	0	0	25035	3676	23726	156824;156825	212412;212413;212414	212414			3	
ILIHVRWK	1	Unmodified	1063.6655	0.66546941	5847				yes	yes	0	0	0	1			By MS/MS		3	0			1									1		52.996	52.996	3	0.042381	46802	160511_QHF_FH_JSI11i_3	33.797	3.1843	+		0.27467	0.26382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27467	0.26382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55134000	41060000	14074000	0	0	0	0	0	0	55134000	41060000	14074000	0	0	0	25036	5847	23727	156826	212415	212415			1	
ILIIGESGVGK	1	Unmodified	1084.6492	0.64921022	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.63	2	4	2				1	5	3	4	4	5	4	61.048	55.969	2	0.00021919	49388	160511_QHF_FH_JSI10i_2	80.231	60.975			1.0324	1.0443	29.699	14	1	Median	1.1674	0.99731	19.375	2	0	Median	0.84133	0.99597	28.148	4	1	Median	1.0419	1.0443	13.033	4	0	Median	1.2212	1.3393	39.926	4	0	Median	739920000	375810000	364110000	110810000	51687000	59121000	202280000	115210000	87069000	245850000	124430000	121420000	180990000	84490000	96499000	25037	4884	23728	156827;156828;156829;156830;156831;156832;156833;156834;156835;156836;156837;156838;156839;156840;156841;156842;156843	212416;212417;212418;212419;212420;212421;212422;212423;212424;212425;212426;212427;212428;212429;212430;212431;212432;212433;212434;212435;212436	212431			21	
ILIIGGSIANFTNVAATFK	1	Unmodified	1949.0986	0.098598418	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		14.9	1.96				1	1				6	2		6		96.207	87.112	2	5.245E-12	49228	160513_QHF_FH_JSI11Kac_6	117.08	93.855			1.1513	1.0443	24.241	4	2	Median	1.1982	1.0325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1061	1.0562	29.462	3	1	Median	NaN	NaN	NaN	0	0	Median	205080000	94963000	110120000	74011000	37419000	36592000	0	0	0	131070000	57544000	73524000	0	0	0	25038	1798	23729	156844;156845;156846;156847;156848;156849;156850;156851	212437;212438;212439;212440;212441;212442;212443;212444	212441			7	
ILILGLDGAGK	1	Unmodified	1068.6543	0.6542956	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.69	2	4					1	4	1	2	4	4	2	77.178	71.221	2	6.8023E-05	34618	160513_QHF_FH_JSI10Kac_5	96.331	55.302			0.77314	0.84006	24.349	11	2	Median	1.0237	0.86797	7.4922	2	0	Median	0.76105	0.90509	16.739	3	0	Median	1.452	1.4521	41.523	4	1	Linear	0.75329	0.83671	0.047686	2	1	Median	401260000	226680000	174580000	62657000	30521000	32136000	80844000	47022000	33822000	174890000	106330000	68559000	82869000	42805000	40064000	25039	1498	23730	156852;156853;156854;156855;156856;156857;156858;156859;156860;156861;156862;156863	212445;212446;212447;212448;212449;212450;212451;212452;212453;212454;212455;212456;212457;212458;212459;212460	212460			16	
ILILQGLK	1	Unmodified	896.60589	0.60588884	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	68.697	67.803	2	0.0057109	55504	160511_QHF_FH_JSI9i_3	64.803	36.697			0.89792	0.90638	15.491	6	0	Median	1.1552	0.96711	11.127	2	0	Median	0.54984	0.67252	NaN	1	0	Median	0.833	0.8331	NaN	1	0	Median	0.89792	0.95135	4.8937	2	0	Median	281630000	141070000	140560000	60140000	23282000	36858000	38729000	20878000	17851000	45689000	26109000	19580000	137070000	70806000	66269000	25040	5451	23731	156864;156865;156866;156867;156868;156869	212461;212462;212463;212464;212465;212466	212463			6	
ILINDAYKR	1	Unmodified	1104.6291	0.62914348	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			30.974	29.613	3	0.028798	24655	160511_QHF_FH_JSI10i_3	27.329	19.104			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25041	5640	23732	156870	212467	212467			1	
ILIQHQK	1	Unmodified	878.53379	0.53378653	353	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	4	4	4	4	11.32	9.5517	2;3	0.0026041	7657	160511_QHF_FH_JSI9i_3	72.234	33.995			0.95539	1.0632	24.34	16	3	Plateau	1.4881	1.2425	11.902	4	0	Median	0.8563	0.99486	20.202	4	1	Linear	1.0681	1.0183	17.54	4	1	Linear	1.1233	1.132	26.603	4	1	Linear	5176400000	2286600000	2889700000	816030000	358680000	457350000	907000000	460900000	446100000	1397500000	591710000	805830000	2055800000	875320000	1180500000	25042	353	23733	156871;156872;156873;156874;156875;156876;156877;156878;156879;156880;156881;156882;156883;156884;156885;156886	212468;212469;212470;212471;212472;212473;212474;212475;212476;212477;212478;212479;212480;212481;212482;212483;212484;212485;212486	212477			19	
ILIQHQKAK	2	Acetyl (K)	1119.6764	0.67642802	353	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		23.948	15.882	3	0.00079548	9598	160513_QHF_FH_JSI10Kac_6	75.378	56.633			0.62928	0.68696	48.507	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8116	0.96805	NaN	1	0	Median	0.48791	0.4875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14232000	8646600	5585000	0	0	0	6451000	3282300	3168700	7780700	5364400	2416300	0	0	0	25043	353	23734	156887;156888	212487;212488	212488	176		2	
ILISLRPQELVDVIK	1	Unmodified	1735.0608	0.060756348	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				100.7	100.49	3	0.021214	81447	160511_QHF_FH_JSI9i_3	36.392	25.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25044	2547	23735	156889	212489	212489			1	
ILITTVPPNLR	0	Unmodified	1235.7602	0.76015765	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.5		6	5					1		2	4	4	2	70.268	68.343	2	1.1687E-05	59197	160511_QHF_FH_JSI12i_2	107.47	97.877			1.0615	1.1447	19.867	9	4	Median	1.1985	1.0055	18.327	2	1	Median	1.0615	1.254	15.357	3	2	Median	1.1194	1.0846	24.77	2	0	Median	1.0201	1.0941	31.471	2	1	Median	622850000	323270000	299580000	97017000	39394000	57623000	115310000	59359000	55952000	194530000	84526000	110000000	216000000	139990000	76006000	25045	2324	23736	156890;156891;156892;156893;156894;156895;156896;156897;156898;156899;156900;156901	212490;212491;212492;212493;212494;212495;212496;212497;212498;212499;212500;212501;212502;212503;212504;212505;212506;212507;212508;212509;212510;212511;212512;212513;212514;212515;212516;212517;212518;212519;212520	212496			31	
ILIVGEPGFGQGSHLAPAVIHALEK	1	Unmodified	2552.4115	0.41149314	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			6							4	2			98.019	97.651	4	3.1148E-07	80297	160511_QHF_FH_JSI10i_3	69.133	66.484			0.88511	0.83392	17.347	6	3	Median	1.0953	0.89547	21.091	4	2	Median	0.67284	0.77045	8.3605	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151850000	83905000	67947000	66906000	32904000	34002000	84945000	51000000	33945000	0	0	0	0	0	0	25046	3133	23737	156902;156903;156904;156905;156906;156907	212521;212522;212523;212524;212525;212526;212527	212522			7	
ILIVGGGVAGLASAGAAK	1	Unmodified	1523.9035	0.90352742	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	76.487	75.923	2	2.2056E-08	65912	160511_QHF_FH_JSI12i_3	128.31	82.34			0.75354	0.77343	18.221	3	3	Median	NaN	NaN	NaN	0	0	Median	0.805	0.9777	NaN	1	1	Median	0.71508	0.68291	NaN	1	1	Median	0.75354	0.77343	NaN	1	1	Median	62567000	37623000	24944000	0	0	0	7244200	4237600	3006600	18268000	9908800	8359600	37055000	23477000	13577000	25047	2405	23738	156908;156909;156910;156911;156912	212528;212529;212530;212531;212532	212532			5	
ILIVTQTPHYMR	0	Unmodified	1470.8017	0.80170489	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.57		1	7						8	5	4	3	4	57.901	52.458	2;3	2.4997E-25	27463	160513_QHF_FH_JSI12Kac_6	172.8	161.22			0.94327	0.96875	19.249	15	4	Median	1.4246	1.1548	21.447	5	2	Median	0.81706	0.97067	16.251	4	1	Median	0.98684	0.93269	2.6469	3	0	Median	0.72529	0.73453	24.147	3	1	Median	1497300000	747260000	750080000	388930000	160050000	228880000	572540000	310490000	262040000	293770000	141150000	152610000	242110000	135560000	106540000	25048	3132	23739	156913;156914;156915;156916;156917;156918;156919;156920;156921;156922;156923;156924;156925;156926;156927;156928	212533;212534;212535;212536;212537;212538;212539;212540;212541;212542;212543;212544;212545;212546;212547;212548;212549;212550;212551;212552;212553;212554;212555;212556;212557;212558;212559;212560	212555			28	
ILIVTQTPHYMR	0	Oxidation (M)	1486.7966	0.79661951	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	54.347	44.566	3	0.00057454	23210	160513_QHF_FH_JSI12Kac_6	64.65	57.28			0.93923	0.95635	8.5259	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0552	1.0158	NaN	1	1	Median	0.83601	0.90039	NaN	1	0	Median	53557000	27191000	26366000	0	0	0	0	0	0	30510000	14939000	15571000	23047000	12251000	10795000	25049	3132	23739	156929;156930	212561;212562;212563	212562		2202	3	
ILIWSGR	0	Unmodified	843.49667	0.49667274	3958	Q96A26	FAM162A	Protein FAM162A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		4	5						2	3	3	2	3	56.431	53.822	2	0.0078603	45039	160511_QHF_FH_JSI10i_3	74.439	28.068			1.007	0.97686	14.582	10	1	Median	1.2031	1.0059	4.2127	3	0	Median	0.86288	1.0139	13.697	2	1	Median	0.95728	0.93785	7.2839	2	0	Median	0.83111	0.86042	26.09	3	0	Median	2820200000	1431200000	1389000000	941310000	457110000	484200000	649450000	371970000	277480000	547360000	262880000	284480000	682080000	339230000	342850000	25050	3958	23740	156931;156932;156933;156934;156935;156936;156937;156938;156939;156940;156941	212564;212565;212566;212567;212568;212569;212570;212571;212572;212573	212566			10	
ILIYHPAFIK	1	Unmodified	1213.7223	0.72231558	2300	Q11201	ST3GAL1	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	65.183	64.587	3	0.00047324	57284	160511_QHF_FH_JSI11i_3	62.463	53.763			1.128	1.2119	21.96	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88646	1.0387	NaN	1	0	Median	0.81256	0.78582	NaN	1	0	Median	1.128	1.2119	NaN	1	0	Median	37882000	19171000	18712000	0	0	0	9612000	4311800	5300200	8924700	4802100	4122500	19346000	10057000	9288800	25051	2300	23741	156942;156943;156944	212574	212574			1	
ILKDLSSEDTR	1	Acetyl (K)	1317.6776	0.67760981	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	46.998	38.056	2	0.050456	20952	160513_QHF_FH_JSI12Kac_3	42.743	30.216			1.2165	1.3351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.3351	NaN	1	0	Median	5082400	2266600	2815800	0	0	0	0	0	0	0	0	0	5082400	2266600	2815800	25052	1147	23742	156945	212575	212575			1	
ILKHEGLGAFYK	2	Acetyl (K)	1416.7765	0.776536	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	61.072	51.859	2;3	8.8295E-06	28243	160513_QHF_FH_JSI11Kac_6	95.417	83.149			0.60012	0.86064	23.4	4	0	Linear	1.0735	0.9172	NaN	1	0	Median	0.7489	0.88587	NaN	1	0	Median	0.5763	0.554	NaN	1	0	Median	0.79474	0.83613	NaN	1	0	Median	306810000	199060000	107740000	64703000	38701000	26002000	84951000	60479000	24472000	83392000	58310000	25082000	73763000	41574000	32189000	25053	3071	23743	156946;156947;156948;156949;156950;156951;156952	212576;212577;212578;212579;212580;212581;212582;212583;212584;212585;212586	212577	2761		11	
ILKHGAK	2	Acetyl (K)	807.49667	0.49667274	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	1	0	0	1			By MS/MS		16	0									1			1		8.4938	-0.86947	2	0.048742	2982	160513_QHF_FH_JSI11Kac_6	60.648	28.583			0.25725	0.24417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25725	0.24417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51905000	40658000	11247000	0	0	0	0	0	0	51905000	40658000	11247000	0	0	0	25054	223;1151	23744	156953	212587	212587			1	
ILKPTDENLLK	2	Unmodified	1282.7497	0.74965254	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	2	3	44.066	43.39	2;3	3.5614E-05	38066	160511_QHF_FH_JSI11i_3	97.911	82.524			0.69789	0.69333	41.169	8	8	Median	0.83397	0.72486	72.39	2	2	Median	0.41374	0.5064	NaN	1	1	Median	0.56397	0.54729	31.955	2	2	Median	1.0299	1.041	23.499	3	3	Median	1610500000	736560000	873980000	183680000	90126000	93551000	114690000	65114000	49578000	447380000	207480000	239900000	864790000	373840000	490950000	25055	5173	23745	156954;156955;156956;156957;156958;156959;156960;156961	212588;212589;212590;212591;212592;212593;212594;212595	212588			8	
ILKTHPK	2	Acetyl (K)	877.53854	0.53853756	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		14.267	4.9749	3	0.022815	5254	160513_QHF_FH_JSI11Kac_6	51.854	17.047			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6768300	6768300	0	0	0	0	0	0	0	6768300	6768300	0	0	0	0	25056	179	23746	156962	212596	212596	97		1	
ILLAELEQLK	1	Unmodified	1168.7067	0.7067251	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	82.34	81.469	2	2.6748E-09	71478	160511_QHF_FH_JSI11i_2	127.68	89.952			1.0762	1.1998	22.229	5	1	Median	1.5557	1.3125	35.459	2	1	Median	0.99466	1.2132	NaN	1	0	Median	0.92589	0.94678	NaN	1	0	Median	1.0762	1.1998	NaN	1	0	Median	1983400000	1029600000	953850000	376810000	195220000	181590000	771550000	413730000	357830000	472770000	238860000	233910000	362270000	181750000	180520000	25057	913	23747	156963;156964;156965;156966;156967	212597;212598;212599;212600;212601;212602;212603;212604;212605;212606	212602			10	
ILLAEVPTMAVEK	1	Unmodified	1412.7949	0.79488818	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							3	2	4	2	81.491	80.939	2;3	3.4013E-05	71235	160511_QHF_FH_JSI11i_2	81.017	62.237			1.1406	1.09	35.154	7	2	Median	1.6437	1.3947	45.547	2	0	Median	0.7462	0.88391	17.916	2	1	Median	1.2885	1.261	20.607	2	1	Median	1.8301	1.9443	NaN	1	0	Median	256330000	119770000	136560000	58408000	25837000	32570000	73413000	41540000	31873000	101020000	44981000	56034000	23492000	7414100	16078000	25058	260	23748	156968;156969;156970;156971;156972;156973;156974;156975;156976;156977;156978	212607;212608;212609;212610;212611;212612;212613;212614;212615;212616;212617;212618;212619;212620	212619			14	
ILLANFLAQTEALMR	0	Unmodified	1702.944	0.94401203	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.52		8	9						10	7	6	6	8	100.58	97.348	2;3	9.1246E-88	50364	160513_QHF_FH_JSI11Kac_6	236.37	171.02		+	0.8555	0.9039	28.622	27	9	Median	1.2035	1.011	55.794	7	3	Median	0.81005	0.92702	14.741	6	1	Median	0.94891	0.86292	5.1832	6	1	Linear	0.74081	0.79754	10.032	8	4	Median	44962000000	23496000000	21467000000	7312600000	3458200000	3854400000	10983000000	5886200000	5096300000	9838300000	4841900000	4996400000	16829000000	9309300000	7519600000	25059	856;75	23749	156979;156980;156981;156982;156983;156984;156985;156986;156987;156988;156989;156990;156991;156992;156993;156994;156995;156996;156997;156998;156999;157000;157001;157002;157003;157004;157005	212621;212622;212623;212624;212625;212626;212627;212628;212629;212630;212631;212632;212633;212634;212635;212636;212637;212638;212639;212640;212641;212642;212643;212644;212645;212646;212647;212648;212649;212650;212651;212652;212653;212654;212655;212656;212657;212658	212630			37	
ILLANFLAQTEALMR	0	Oxidation (M)	1718.9389	0.93892665	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	96.13	91.324	2;3	1.4816E-52	46840	160513_QHF_FH_JSI11Kac_6	196.24	148.15		+	1.0096	1.0556	10.619	14	3	Median	1.2996	1.0149	8.1934	4	1	Linear	0.92075	1.0749	11.649	4	1	Median	1.0591	0.97701	14.726	3	1	Median	0.92877	0.98499	7.5124	3	0	Median	7148700000	3469700000	3679000000	2010400000	765650000	1244700000	2742600000	1565300000	1177300000	1055100000	484090000	571000000	1340700000	654670000	685990000	25060	856;75	23749	157006;157007;157008;157009;157010;157011;157012;157013;157014;157015;157016;157017;157018;157019	212659;212660;212661;212662;212663;212664;212665;212666;212667;212668;212669;212670;212671;212672;212673;212674;212675;212676;212677;212678;212679;212680;212681;212682	212664		36	23	
ILLANFLAQTEALMRGK	1	Unmodified	1888.0604	0.060438772	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	1		By MS/MS			16	0									1		1			95.446	89.726	3	0.00070225	51758	160513_QHF_FH_JSI10Kac_6	127.3	97.163		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94330000	94330000	0	0	0	0	94330000	94330000	0	0	0	0	0	0	0	25061	856;75	23750	157020	212683	212683			1	
ILLAVNGK	1	Unmodified	826.52764	0.52763852	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.854	39.395	2	0.025649	33782	160511_QHF_FH_JSI11i_2	52.636	22.83			1.1736	1.1863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1736	1.1863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172550000	84940000	87611000	0	0	0	0	0	0	172550000	84940000	87611000	0	0	0	25062	262	23751	157021	212684	212684			1	
ILLDHEK	1	Unmodified	866.48617	0.48616764	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.15		7	2						1	2	2	4	2	15.485	14.952	2;3	0.0038037	12509	160511_QHF_FH_JSI10i_2	63.565	18.484			1.1184	1.0744	14.13	8	0	Median	1.1448	0.98487	10.195	2	0	Median	0.86837	1.0744	0.97394	2	0	Median	1.1502	1.1758	9.7072	3	0	Plateau	0.81127	0.90795	NaN	1	0	Median	2210000000	1013100000	1196900000	368870000	164360000	204510000	537820000	299280000	238540000	948390000	386760000	561630000	354950000	162750000	192200000	25063	1818	23752	157022;157023;157024;157025;157026;157027;157028;157029;157030;157031	212685;212686;212687;212688;212689;212690;212691;212692;212693;212694;212695;212696;212697;212698;212699	212697			15	
ILLDHEKEWK	2	Acetyl (K)	1351.7136	0.71360139	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.089	47.364	3	0.0062247	25654	160513_QHF_FH_JSI11Kac_6	58.172	41.919			0.034612	0.033969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.034612	0.033969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26106000	25150000	956750	0	0	0	0	0	0	26106000	25150000	956750	0	0	0	25064	1818	23753	157032	212700	212700	1836		1	
ILLDPNSEEVSEK	1	Unmodified	1471.7406	0.740604	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.32	48.64	2	5.6936E-05	43747	160511_QHF_FH_JSI10i_1	108.7	69.392			1.1886	0.96256	12.851	4	0	Linear	1.0099	0.83658	NaN	1	0	Median	0.72209	0.87229	NaN	1	0	Median	1.1096	1.0622	NaN	1	0	Median	1.04	1.068	NaN	1	0	Median	374050000	178440000	195610000	88552000	40707000	47845000	81330000	44905000	36425000	105840000	38601000	67242000	98324000	54222000	44102000	25065	1736	23754	157033;157034;157035;157036	212701;212702	212702			2	
ILLEAAR	0	Unmodified	784.48069	0.48068833	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	31.495	30.747	2	0.023698	26199	160511_QHF_FH_JSI12i_2	55.441	24.772			1.0871	1.1238	27.269	5	0	Median	1.1743	0.9983	NaN	1	0	Median	0.50794	0.63271	NaN	1	0	Median	1.0871	1.1238	NaN	1	0	Median	1.1462	1.2125	1.9335	2	0	Median	1822600000	922370000	900250000	323290000	153370000	169920000	390740000	206320000	184410000	654880000	322540000	332330000	453710000	240130000	213580000	25066	1645	23755	157037;157038;157039;157040;157041	212703	212703			1	
ILLELLNQMDGFDQNVNVK	1	Unmodified	2202.1355	0.13545421	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.56	101.45	3	1.0294E-24	89163	160511_QHF_FH_JSI11i_2	169.61	153.66			1.1037	1.1407	15.118	4	0	Median	1.332	1.1384	NaN	1	0	Median	0.72502	0.87333	NaN	1	0	Median	1.1903	1.2336	NaN	1	0	Median	1.0234	1.143	NaN	1	0	Median	1247300000	613670000	633640000	175580000	70217000	105360000	236260000	140920000	95345000	411620000	181320000	230290000	423850000	221210000	202640000	25067	1567	23756	157042;157043;157044;157045	212704;212705;212706;212707;212708;212709	212706			6	
ILLEQSHKK	2	Acetyl (K)	1136.6554	0.65535823	5856				yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.361								2	11	4	3	3	3	42.804	33.425	2;3	0.011546	17791	160513_QHF_FH_JSI9Kac_6	86.011	42.764	+		1.0932	1.0735	8.1465	13	0	Median	1.2321	1.0344	4.8254	4	0	Median	0.99438	1.1932	5.3535	3	0	Plateau	1.142	1.1122	2.791	3	0	Plateau	0.91846	0.96798	10.413	3	0	Plateau	598130000	285450000	312680000	178500000	75186000	103320000	171580000	88099000	83482000	133870000	63830000	70036000	114180000	58336000	55845000	25068	5856	23757	157046;157047;157048;157049;157050;157051;157052;157053;157054;157055;157056;157057;157058	212710;212711;212712;212713;212714;212715;212716	212713	3585		6	
ILLFAAQASHHLVPPEIIQSLLMTVANNFVTDK	1	Unmodified	3629.9644	0.96436013	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.94	95.22	5	5.8807E-11	56162	160513_QHF_FH_JSI10Kac_6	85.412	79.714			0.8895	1.0303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8895	1.0303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86400000	44969000	41431000	0	0	0	86400000	44969000	41431000	0	0	0	0	0	0	25069	5051	23758	157059	212717	212717			1	
ILLGGYQSR	0	Unmodified	1005.5607	0.56072956	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		38.257	37.269	2	7.5297E-05	31067	160511_QHF_FH_JSI10i_3	95.909	44.337			1.0197	0.97018	7.5679	3	0	Median	1.3683	1.0971	NaN	1	0	Median	0.85464	0.97018	NaN	1	0	Median	1.0197	0.95575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	434230000	210250000	223980000	152980000	63392000	89592000	161980000	90640000	71344000	119260000	56217000	63040000	0	0	0	25070	4271	23759	157060;157061;157062	212718;212719	212718			2	
ILLHHAANSVK	1	Unmodified	1201.6931	0.69314072	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	3.24			14						1	7	3	3	2	14.917	14.389	2;3	7.072E-05	11893	160511_QHF_FH_JSI9i_3	66.262	60.261			0.93375	0.94109	52.891	11	3	Median	1.9974	1.6466	44.542	3	1	Median	0.93375	1.0802	48.48	3	1	Median	0.43773	0.41061	31.039	3	1	Median	1.0237	1.0395	14.071	2	0	Median	825140000	394440000	430700000	240300000	94173000	146130000	157320000	84619000	72705000	166850000	95876000	70971000	260670000	119770000	140900000	25071	1746	23760	157063;157064;157065;157066;157067;157068;157069;157070;157071;157072;157073;157074;157075;157076;157077	212720;212721;212722;212723;212724;212725;212726;212727;212728;212729;212730;212731;212732;212733;212734;212735;212736;212737	212729			18	
ILLHLFK	1	Unmodified	882.56911	0.5691094	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	1	2	3	1	63.065	60.938	3	0.004193	52188	160511_QHF_FH_JSI12i_3	60.961	21.419			1.1325	1.0808	33.499	6	3	Median	1.1098	0.91717	NaN	1	0	Median	0.84195	0.96365	NaN	1	0	Median	1.2046	1.2123	50.68	3	3	Median	1.1558	1.2202	NaN	1	0	Median	158180000	74832000	83344000	28404000	11517000	16887000	32120000	13820000	18300000	49052000	24686000	24366000	48601000	24809000	23791000	25072	3930	23761	157078;157079;157080;157081;157082;157083;157084	212738;212739;212740;212741;212742;212743;212744;212745;212746;212747	212746			10	
ILLIFEGTNEILR	0	Unmodified	1529.8817	0.88172935	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	92.046	82.935	2	0.00020403	44797	160513_QHF_FH_JSI12Kac_6	98.353	51.093			0.83876	0.79981	82.779	2	1	Median	1.6587	1.4361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42415	0.44543	NaN	1	1	Median	85526000	44219000	41307000	47572000	18918000	28653000	0	0	0	0	0	0	37955000	25301000	12654000	25073	4777	23762	157085;157086	212748;212749;212750	212750			3	
ILLITEDLK	1	Unmodified	1056.6431	0.64306221	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		1	2	3	2	74.41	71.272	2	0.00013044	62360	160511_QHF_FH_JSI12i_2	91.069	75.629			0.87968	0.91071	29.602	8	0	Median	0.99724	0.84751	NaN	1	0	Median	0.79392	0.9504	4.3098	2	0	Median	0.91512	0.89968	20.743	3	0	Median	0.60657	0.66722	54.886	2	0	Median	257340000	136100000	121240000	34424000	17357000	17067000	66863000	36092000	30770000	85984000	40116000	45868000	70066000	42531000	27534000	25074	2276	23763	157087;157088;157089;157090;157091;157092;157093;157094	212751;212752;212753;212754;212755;212756;212757;212758;212759	212751			9	
ILLLEAGPKK	2	Unmodified	1080.6907	0.6906811	5550	Q9Y2Z9	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	44.38	44.141	3	0.014965	37730	160511_QHF_FH_JSI12i_3	39.148	25.03			1.1118	1.1288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1118	1.1288	NaN	1	1	Median	57160000	25492000	31668000	0	0	0	0	0	0	0	0	0	57160000	25492000	31668000	25075	5550	23764	157095	212760	212760			1	
ILLLGEAQVGK	1	Unmodified	1139.6914	0.69140938	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.864	63.961	2	6.6068E-05	56681	160511_QHF_FH_JSI10i_2	92.838	43.123			0.89975	0.88723	12.448	4	0	Median	0.91923	0.80933	NaN	1	0	Median	0.88069	1.0786	NaN	1	0	Median	0.92384	0.9197	NaN	1	0	Median	0.78612	0.8559	NaN	1	0	Median	200680000	90937000	109740000	33128000	15469000	17659000	45240000	21032000	24208000	66191000	29697000	36494000	56120000	24739000	31381000	25076	3441	23765	157096;157097;157098;157099	212761;212762;212763;212764	212764			4	
ILLLGLDNAGK	1	Unmodified	1125.6758	0.67575932	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.76	1	5	2					3		1	3	3	4	75.911	72.583	2	2.1946E-05	63604	160511_QHF_FH_JSI12i_2	102.07	78.639			0.91742	0.94761	55.351	11	3	Median	0.98768	0.86267	NaN	1	0	Median	0.79083	0.94761	5.2713	3	0	Median	0.91742	0.9392	27.45	3	1	Median	1.1186	1.2087	81.306	4	2	Median	739410000	337290000	402120000	104620000	45431000	59185000	148840000	79021000	69821000	226000000	110250000	115760000	259950000	102590000	157350000	25077	1451	23766	157100;157101;157102;157103;157104;157105;157106;157107;157108;157109;157110	212765;212766;212767;212768;212769;212770;212771;212772;212773;212774;212775;212776	212766			10	
ILLLITSSHSDYCR	0	Unmodified	1676.8556	0.85559095	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	70.522	61.573	3	6.7452E-08	32308	160513_QHF_FH_JSI12Kac_6	93.494	79.464			0.70404	0.75092	69.467	3	2	Median	NaN	NaN	NaN	0	0	Median	1.4311	1.6844	NaN	1	1	Median	0.43547	0.42257	NaN	1	1	Median	0.70404	0.75092	NaN	1	0	Median	374450000	190680000	183770000	0	0	0	244610000	119540000	125070000	85591000	52138000	33453000	44253000	19006000	25247000	25078	2970	23767	157111;157112;157113	212777;212778;212779	212778			3	
ILLLQSWFR	0	Unmodified	1174.6863	0.68626443	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.3	82.974	2	4.2354E-06	48205	160513_QHF_FH_JSI10Kac_6	147.52	111.64			1.0417	1.0541	18.779	4	1	Median	1.3539	1.1719	NaN	1	0	Median	0.66895	0.79632	NaN	1	1	Median	1.2049	1.1761	NaN	1	0	Median	0.90061	0.94809	NaN	1	0	Median	398990000	193340000	205650000	74872000	29428000	45444000	158110000	92830000	65275000	92450000	32504000	59946000	73559000	38577000	34982000	25079	2420	23768	157114;157115;157116;157117	212780;212781;212782;212783	212783			4	
ILLLTLLFEELK	1	Unmodified	1443.8953	0.89525415	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.4	6.43			3						4	2	3	2		102.81	99.049	2	4.45E-27	56436	160513_QHF_FH_JSI10Kac_6	168.74	121.48			0.35246	0.12694	105.67	4	4	Linear	0.1262	0.10979	NaN	1	1	Median	0.35246	0.42312	105.43	2	2	Median	0.90601	0.86874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	456110000	402070000	54034000	290320000	258840000	31483000	159010000	139170000	19831000	6779900	4060000	2719900	0	0	0	25080	3290	23769	157118;157119;157120;157121;157122;157123;157124	212784;212785;212786;212787;212788;212789;212790	212790			7	
ILLMGLR	0	Unmodified	814.50988	0.50987997	4838	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		71.891	63.385	2	0.019512	34797	160513_QHF_FH_JSI10Kac_6	70.865	70.865			0.92573	1.097	10.166	3	0	Plateau	1.4353	1.2461	NaN	1	0	Median	0.91346	1.097	NaN	1	0	Median	1.0508	1.0193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85367000	40787000	44580000	12905000	4700900	8204300	41390000	22336000	19054000	31072000	13751000	17322000	0	0	0	25081	4838	23770	157125;157126;157127	212791	212791			1	
ILLNACCPGWVR	0	Unmodified	1457.7272	0.72715974	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	67.584	66.727	2	2.1187E-05	55889	160511_QHF_FH_JSI10i_3	128.69	101.21			1.0781	1.1337	14.97	8	0	Median	1.3591	1.1337	2.9036	2	0	Median	1.0276	1.2231	6.0164	2	0	Median	1.011	0.97942	13.33	2	0	Median	1.2411	1.2825	22.654	2	0	Median	419320000	195520000	223800000	70138000	25916000	44222000	108700000	56443000	52254000	128650000	63098000	65548000	111840000	50059000	61780000	25082	1092	23771	157128;157129;157130;157131;157132;157133;157134;157135	212792;212793;212794;212795;212796;212797;212798;212799;212800	212795			9	
ILLNAGAEINSR	0	Unmodified	1269.7041	0.70409934	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0				By MS/MS	3	0			1										1	48.836	48.598	2	0.017163	41594	160511_QHF_FH_JSI12i_3	44.425	24.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25083	3434;489	23772	157136	212801	212801			1	
ILLNIEHR	0	Unmodified	1006.5924	0.59236404	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	38.442	37.62	3	0.00037081	32777	160511_QHF_FH_JSI11i_3	87.696	70.457			1.0399	1.0699	11.693	5	1	Median	1.6607	1.3819	NaN	1	0	Median	0.91123	1.0941	3.1639	2	1	Median	1.1297	1.0492	NaN	1	0	Median	1.0399	1.0483	NaN	1	0	Median	249550000	118090000	131460000	33342000	13389000	19953000	59327000	34465000	24862000	73200000	31279000	41921000	83686000	38960000	44725000	25084	1535	23773	157137;157138;157139;157140;157141;157142	212802;212803;212804;212805;212806	212802			5	
ILLNYLPLER	0	Unmodified	1242.7336	0.73360855	5031	Q9NVG8	TBC1D13	TBC1 domain family member 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.662	84.069	2	0.056946	73902	160511_QHF_FH_JSI11i_2	41.724	21.937			0.68414	0.70834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68414	0.70834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35474000	19378000	16096000	0	0	0	0	0	0	35474000	19378000	16096000	0	0	0	25085	5031	23774	157143	212807	212807			1	
ILLQSKNAGAVIGK	2	Acetyl (K)	1452.8664	0.86641364	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.6							3	6	1	1	2	5	2	70.013	59.409	2;3	2.042E-37	31838	160513_QHF_FH_JSI11Kac_5	187.44	146.04			0.48352	0.49581	106.32	8	1	Median	0.85409	0.70482	NaN	1	0	Median	0.84761	1.0236	14.707	2	0	Median	0.41568	0.40857	132.6	3	1	Plateau	0.42061	0.4582	38.528	2	0	Median	188670000	133940000	54734000	1794500	1034100	760460	17580000	9266500	8313900	154690000	114070000	40616000	14608000	9564200	5043500	25086	1975	23775	157144;157145;157146;157147;157148;157149;157150;157151;157152;157153	212808;212809;212810;212811;212812;212813;212814;212815;212816;212817;212818	212813	1993		11	
ILLQYLK	1	Unmodified	889.56369	0.56368968	5190	Q9P0U3	SENP1	Sentrin-specific protease 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				76.9	68.297	2	0.041959	36597	160513_QHF_FH_JSI9Kac_6	56.026	1.4146			1.0973	0.94782	NaN	1	0	Median	1.0973	0.94782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	238530000	112720000	125810000	238530000	112720000	125810000	0	0	0	0	0	0	0	0	0	25087	5190	23776	157154	212819	212819			1	
ILLSHFNWDK	1	Unmodified	1271.6663	0.66625727	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	61.944	61.119	2;3	6.4189E-08	50250	160511_QHF_FH_JSI9i_3	113.44	113.44			1.1022	1.0527	16.247	8	3	Median	1.1676	0.94974	1.4816	2	0	Median	1.0001	1.1703	13.57	2	1	Median	1.1715	1.1231	10.569	2	0	Median	0.90794	0.91717	25.965	2	2	Median	1889900000	879230000	1010700000	305940000	132030000	173910000	247980000	112010000	135970000	625430000	272760000	352670000	710580000	362440000	348150000	25088	5641	23777	157155;157156;157157;157158;157159;157160;157161;157162;157163	212820;212821;212822;212823;212824;212825;212826;212827;212828;212829;212830;212831;212832;212833	212830			14	
ILLSHFNWDKEK	2	Acetyl (K)	1570.8144	0.81437807	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	74.131	65.003	3	1.6658E-08	35302	160513_QHF_FH_JSI11Kac_6	109.6	83.476			0.67461	0.64532	7.3318	3	0	Plateau	0.83878	0.7331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67461	0.64532	NaN	1	0	Median	0.60619	0.64602	NaN	1	0	Median	154040000	100080000	53964000	36854000	26443000	10411000	0	0	0	72656000	41308000	31348000	44530000	32325000	12205000	25089	5641	23778	157164;157165;157166	212834;212835;212836	212834	3512		3	
ILLSQTTGVAIPLHASSLDDVSLASTPK	1	Unmodified	2833.5437	0.5436891	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	3	4	95.677	95.475	3;4	3.5054E-36	85031	160511_QHF_FH_JSI11i_3	158.18	154.69			1.0676	1.1004	16.602	9	2	Median	0.98501	0.83328	NaN	1	0	Median	0.86208	1.0289	NaN	1	0	Median	1.2211	1.1553	20.088	3	0	Plateau	1.1092	1.1845	11.079	4	2	Median	716470000	337020000	379450000	54248000	24955000	29293000	63984000	33977000	30007000	232740000	123780000	108960000	365490000	154310000	211180000	25090	1016	23779	157167;157168;157169;157170;157171;157172;157173;157174;157175	212837;212838;212839;212840;212841;212842;212843;212844;212845;212846;212847;212848;212849;212850;212851;212852;212853	212837			17	
ILLSSGR	0	Unmodified	744.44939	0.4493882	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			22.056	21.031	2	0.0099713	16941	160511_QHF_FH_JSI9i_3	76.847	0			1.2975	1.0724	13.575	3	0	Median	1.4131	1.1453	9.2959	2	0	Median	0.76895	0.9323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3481700000	1558100000	1923700000	2345900000	979560000	1366300000	1135800000	578520000	557320000	0	0	0	0	0	0	25091	2090	23780	157176;157177;157178	212854;212855;212856;212857	212855			4	
ILLSSGRDASLMVTNDGATILK	1	Unmodified	2274.2253	0.22533185	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			80.038	78.688	3	0.04132	65975	160511_QHF_FH_JSI10i_3	28.076	8.2563			0.24999	0.28993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.24999	0.28993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10703000	8699000	2003600	0	0	0	10703000	8699000	2003600	0	0	0	0	0	0	25092	2090	23781	157179	212858	212858			1	
ILLTDMHLPSFHLK	1	Unmodified	1663.912	0.91198362	5003	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	89.825	89.518	4	0.0023895	77336	160511_QHF_FH_JSI12i_3	44.457	40.732			1.5147	1.5311	17.639	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.95162	1.0666	NaN	1	0	Median	1.1689	1.1059	NaN	1	0	Median	1.2524	1.3026	24.421	2	1	Median	130730000	66194000	64540000	0	0	0	22557000	9932400	12624000	27053000	15749000	11304000	81124000	40513000	40612000	25093	5003	23782	157180;157181;157182;157183	212859;212860;212861;212862;212863;212864;212865	212863			7	
ILLTEPPMNPTK	1	Oxidation (M)	1368.7323	0.73228792	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	2	2	1	50.231	47.872	2	0.00012358	43643	160511_QHF_FH_JSI12i_1	93.111	88.17			1.1575	1.0883	15.08	6	3	Median	1.2519	0.9979	NaN	1	0	Median	1.0256	1.163	16.043	2	2	Median	1.1575	1.0883	4.5803	2	1	Median	1.3607	1.4675	NaN	1	0	Median	160340000	72680000	87663000	25406000	10892000	14515000	63042000	29317000	33725000	35242000	18958000	16284000	36652000	13513000	23139000	25094	1940	23783	157184;157185;157186;157187;157188;157189	212866;212867;212868;212869;212870;212871;212872	212868		1608	7	
ILLTEPPMNPTK	1	Unmodified	1352.7374	0.7373733	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.86	9	6	2				2			5	5	5	4	62.375	60.349	2;3	5.5238E-50	51696	160511_QHF_FH_JSI12i_2	187.64	128.97			0.99117	1.0061	24.538	17	7	Median	1.4689	1.2273	29.2	5	5	Median	0.88733	1.046	19.718	5	1	Median	0.9927	0.98326	29.19	4	1	Median	0.87503	0.92364	4.787	3	0	Median	3186300000	1615800000	1570500000	947280000	401160000	546120000	770010000	417240000	352770000	817510000	412370000	405140000	651530000	385050000	266490000	25095	1940	23783	157190;157191;157192;157193;157194;157195;157196;157197;157198;157199;157200;157201;157202;157203;157204;157205;157206;157207;157208	212873;212874;212875;212876;212877;212878;212879;212880;212881;212882;212883;212884;212885;212886;212887;212888;212889;212890;212891;212892;212893;212894;212895;212896;212897;212898	212877			26	
ILLTNIR	0	Unmodified	841.53854	0.53853756	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		38.436	37.561	2	0.0060195	33068	160511_QHF_FH_JSI10i_2	92.692	0			1.232	1.0987	17.079	4	0	Median	1.522	1.2515	22.358	2	0	Median	0.80724	0.98851	NaN	1	0	Median	1.2025	1.1298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2171900000	1039300000	1132600000	591400000	276770000	314630000	600830000	302180000	298660000	979700000	460390000	519300000	0	0	0	25096	2346	23784	157209;157210;157211;157212	212899;212900;212901;212902	212902			4	
ILLTPPEHLER	0	Unmodified	1316.7452	0.74523587	1211	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.175	50.649	3	0.02663	43683	160511_QHF_FH_JSI11i_2	26.627	18.522			0.66494	0.65386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66494	0.65386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41435000	21964000	19471000	0	0	0	0	0	0	41435000	21964000	19471000	0	0	0	25097	1211	23785	157213	212903	212903			1	
ILLTQENPFFR	0	Unmodified	1376.7452	0.74523587	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.15		4	1					4	8	4	4	5	4	83.445	76.863	2;3	1.0514E-35	39252	160513_QHF_FH_JSI12Kac_6	211.52	179.2			0.94531	0.9917	72.045	17	2	Median	1.0495	0.89913	122.22	4	1	Median	0.84009	1.0013	71.506	4	1	Median	1.0595	1.0535	16.711	5	0	Median	0.92685	0.99928	19.739	4	0	Median	6254000000	3183300000	3070700000	1187100000	644110000	542980000	2002300000	1062400000	939950000	1595300000	689740000	905570000	1469300000	787100000	682210000	25098	2282	23786	157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224;157225;157226;157227;157228;157229;157230	212904;212905;212906;212907;212908;212909;212910;212911;212912;212913;212914;212915;212916;212917;212918;212919;212920;212921;212922;212923;212924;212925;212926;212927;212928	212924			25	
ILLTQENPFFRK	1	Unmodified	1504.8402	0.84019889	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.28		3	7						5	4	5	4	2	72.042	68.786	2;3	4.4643E-08	35181	160513_QHF_FH_JSI12Kac_6	134.99	115.89			1.1394	1.143	17.146	15	4	Median	1.3842	1.1504	12.054	4	1	Median	1.1364	1.2904	16.432	5	1	Median	1.1317	1.0658	17.458	4	1	Median	0.90816	0.94561	11.976	2	1	Median	2600200000	1250900000	1349300000	538560000	229430000	309130000	1031300000	518540000	512810000	608850000	278380000	330470000	421440000	224540000	196900000	25099	2282	23787	157231;157232;157233;157234;157235;157236;157237;157238;157239;157240;157241;157242;157243;157244;157245	212929;212930;212931;212932;212933;212934;212935;212936;212937;212938;212939;212940;212941;212942	212940			13	
ILLWDTR	0	Unmodified	915.5178	0.51780212	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.44	6.77		3	2						4	2	3	1	3	67.331	62.873	2	0.0073727	54129	160511_QHF_FH_JSI12i_2	94.262	60.523			1.0755	1.1573	9.227	9	5	Median	1.3852	1.1792	4.6115	2	1	Median	1.0189	1.2014	13.956	3	2	Median	1.0755	1.0298	NaN	1	0	Median	1.0553	1.1573	6.7322	3	2	Median	829180000	391720000	437460000	164450000	58466000	105980000	325310000	159580000	165730000	27463000	12023000	15440000	311960000	161640000	150310000	25100	4355	23788	157246;157247;157248;157249;157250;157251;157252;157253;157254	212943;212944;212945;212946;212947;212948	212943			6	
ILLYISQQQPVTVAR	0	Unmodified	1727.9934	0.99340506	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	6.19		7	1						3	2	4	3	2	75.205	72.718	2	4.137E-120	37748	160513_QHF_FH_JSI11Kac_6	265.6	234.73			1.0211	1.0118	29.278	8	3	Median	0.89297	0.78432	NaN	1	0	Median	1.1962	1.415	39.709	3	2	Median	1.3179	1.2868	17.441	2	1	Median	0.81955	0.88202	2.8681	2	0	Median	170340000	79884000	90461000	12674000	6263600	6410300	75515000	39118000	36398000	44438000	15329000	29110000	37717000	19174000	18543000	25101	2938	23789	157255;157256;157257;157258;157259;157260;157261;157262;157263;157264;157265	212949;212950;212951;212952;212953;212954;212955;212956;212957;212958;212959;212960;212961	212951			13	
ILLYYIAGSLSTMFR	0	Unmodified	1746.9379	0.93786402	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	2.21				3	1				9	2	3	5	3	98.754	90.147	2;3	8.647E-105	51432	160513_QHF_FH_JSI9Kac_6	203.39	196.71			0.98071	0.9964	26.029	10	2	Median	1.2851	1.0935	7.1833	2	0	Median	0.72873	0.83154	9.8236	3	0	Median	1.6631	1.5888	0.18019	2	0	Median	0.9007	0.95521	10.853	3	2	Median	5384300000	2750500000	2633800000	1738300000	817900000	920430000	1329300000	868750000	460520000	1302600000	529160000	773450000	1014100000	534720000	479380000	25102	220	23790	157266;157267;157268;157269;157270;157271;157272;157273;157274;157275;157276;157277;157278	212962;212963;212964;212965;212966;212967;212968;212969;212970;212971;212972;212973;212974;212975;212976;212977;212978;212979	212970			18	
ILLYYIAGSLSTMFR	0	Oxidation (M)	1762.9328	0.93277864	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									3	2			1	94.982	85.755	2;3	2.8995E-05	46575	160513_QHF_FH_JSI12Kac_6	96.464	92.496			0.87889	0.84468	21.985	2	1	Median	0.83014	0.72307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9305	0.98674	NaN	1	0	Median	122070000	55660000	66408000	82613000	37735000	44878000	0	0	0	0	0	0	39456000	17925000	21530000	25103	220	23790	157279;157280;157281	212980;212981;212982;212983	212982		92	4	
ILMAAPGMAIPPFIMNTLEK	1	Unmodified	2157.14	0.140011	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	3	2	5	102.5	102.43	2;3	4.5338E-95	88311	160511_QHF_FH_JSI12i_2	218.31	195.08			0.96471	0.9369	19.655	9	2	Median	1.0652	0.87383	NaN	1	0	Median	0.76288	0.93417	2.7544	3	1	Median	1.3796	1.3227	NaN	1	0	Median	1.133	1.2044	19.737	4	1	Median	2919100000	1384200000	1534900000	413950000	208260000	205690000	833030000	467150000	365880000	446170000	147580000	298590000	1225900000	561210000	664740000	25104	4806	23791	157282;157283;157284;157285;157286;157287;157288;157289;157290;157291;157292	212984;212985;212986;212987;212988;212989;212990;212991;212992;212993;212994	212986			11	
ILMAINGK	1	Unmodified	858.49971	0.49970921	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	40.712	39.904	2	0.01438	33761	160511_QHF_FH_JSI12i_3	60.788	34.679			0.96955	1.0081	20.682	5	1	Median	1.0895	0.94166	NaN	1	0	Median	0.81035	1.0081	NaN	1	0	Median	0.82477	0.83756	NaN	1	0	Median	1.1833	1.2434	22.268	2	1	Median	992140000	489640000	502500000	187970000	94768000	93200000	175690000	90278000	85414000	261880000	139150000	122730000	366610000	165450000	201160000	25105	115	23792	157293;157294;157295;157296;157297	212995;212996;212997;212998	212998			4	
ILMDKPEMNVVLK	2	Unmodified	1528.8357	0.83570714	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	64.118	63.639	2;3	0.00050921	54878	160511_QHF_FH_JSI12i_3	95.477	79.339			1.0868	1.0747	26.554	8	2	Median	1.2009	1.0243	47.413	2	1	Median	0.69515	0.86346	NaN	1	1	Median	0.77301	0.74048	29.434	3	0	Plateau	1.2336	1.2187	1.5728	2	0	Median	2316000000	1073800000	1242200000	241430000	92654000	148780000	24367000	14533000	9833300	958230000	489590000	468640000	1092000000	477020000	614970000	25106	1862	23793	157298;157299;157300;157301;157302;157303;157304;157305	212999;213000;213001;213002;213003;213004;213005;213006;213007	213004			9	
ILMDSPEDADLFHSEEIK	1	Unmodified	2087.9721	0.97213685	5611	Q9Y478	PRKAB1	5'-AMP-activated protein kinase subunit beta-1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	75.509	74.248	3	0.00051786	64221	160511_QHF_FH_JSI12i_2	61.096	53.585			1.0186	1.1321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0186	1.1321	NaN	1	1	Median	30538000	16901000	13637000	0	0	0	0	0	0	0	0	0	30538000	16901000	13637000	25107	5611	23794	157306;157307	213008;213009	213008			2	
ILMEFNK	1	Unmodified	893.46807	0.46807473	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	48.123	47.2	2	0.011748	40407	160511_QHF_FH_JSI11i_2	60.788	16.177			1.1152	1.2251	6.3746	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89942	1.107	NaN	1	0	Median	1.2826	1.2251	NaN	1	0	Median	1.1152	1.2453	NaN	1	0	Median	355010000	191420000	163590000	0	0	0	163440000	93813000	69628000	22778000	8683600	14095000	168790000	88926000	79865000	25108	5479	23795	157308;157309;157310;157311;157312	213010;213011;213012;213013	213012			4	
ILMEHIHK	1	Unmodified	1019.5586	0.55862107	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	2	2	18.653	18.198	2;3	0.00071837	14970	160511_QHF_FH_JSI10i_3	79.906	47.972			1.3436	1.3409	59.227	7	3	Median	2.3702	1.974	48.682	2	2	Median	0.34068	0.39741	NaN	1	1	Median	0.98853	0.9402	3.7318	2	0	Median	1.3711	1.3867	4.7469	2	0	Median	3907600000	1734000000	2173600000	423140000	149270000	273860000	315470000	226620000	88843000	1331700000	670220000	661450000	1837400000	687890000	1149500000	25109	2129	23796	157313;157314;157315;157316;157317;157318;157319	213014;213015;213016;213017;213018;213019;213020	213016			7	
ILMEHIHK	1	Oxidation (M)	1035.5535	0.55353569	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	1	3	13.595	13.352	2;3	0.0047813	14974	160511_QHF_FH_JSI11i_3	48.794	16.86			1.1049	1.0558	65.858	5	1	Median	2.188	1.8259	NaN	1	0	Median	0.36696	0.44068	NaN	1	0	Median	1.1049	1.0558	NaN	1	0	Median	1.5173	1.5552	64.164	2	1	Median	901070000	425600000	475480000	103680000	36350000	67335000	90754000	62495000	28259000	183490000	88577000	94911000	523150000	238180000	284970000	25110	2129	23796	157320;157321;157322;157323;157324;157325	213021;213022;213023;213024;213025	213021		1786	5	
ILMEHIHKLK	2	Acetyl (K)	1302.7482	0.74821276	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		47.651	38.322	3;4	0.00060707	20994	160513_QHF_FH_JSI11Kac_6	74.944	51.093			0.20449	0.20458	89.146	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83605	0.99229	NaN	1	0	Median	0.21544	0.21214	5.1323	2	0	Median	NaN	NaN	NaN	0	0	Median	70968000	53302000	17666000	0	0	0	10936000	5017400	5918700	60032000	48284000	11747000	0	0	0	25111	2129	23797	157326;157327;157328	213026;213027;213028	213027	2228		3	
ILMEVEK	1	Unmodified	860.46774	0.46774038	4910	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				36.626	35.582	2	0.056861	30986	160511_QHF_FH_JSI9i_2	46.426	15.136			5.9311	5.0531	NaN	1	1	Median	5.9311	5.0531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60216000	12100000	48116000	60216000	12100000	48116000	0	0	0	0	0	0	0	0	0	25112	4910	23798	157329	213029	213029			1	
ILMGNEELTR	0	Unmodified	1174.6016	0.6016081	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.692	42.218	2	0.0066984	35951	160511_QHF_FH_JSI12i_2	54.066	30.111			1.4387	1.4461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4387	1.4461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116540000	52963000	63574000	0	0	0	0	0	0	116540000	52963000	63574000	0	0	0	25113	4076	23799	157330;157331	213030;213031	213030			2	
ILMHHIPEQTTQLLK	1	Unmodified	1800.992	0.99202486	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	53.603	53.444	3	0.0017162	45915	160511_QHF_FH_JSI12i_3	59.709	47.94			2.3795	2.3427	50.503	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2786	1.2019	NaN	1	0	Median	1.4775	1.4867	69.279	2	1	Median	163520000	84712000	78807000	0	0	0	0	0	0	46123000	22597000	23526000	117400000	62115000	55280000	25114	4668	23800	157332;157333;157334	213032;213033	213033			2	
ILMHTFPK	1	Unmodified	985.54191	0.54190838	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	35.747	34.986	3	0.00055203	28585	160511_QHF_FH_JSI9i_3	87.696	64.956			0.93836	0.83856	18.246	4	1	Median	0.99762	0.79218	NaN	1	1	Median	1.0457	1.1805	NaN	1	0	Median	0.88262	0.8383	NaN	1	0	Median	0.83303	0.83882	NaN	1	0	Median	607750000	301950000	305800000	163860000	70931000	92925000	143610000	78583000	65032000	126140000	65265000	60878000	174140000	87169000	86969000	25115	3748	23801	157335;157336;157337;157338	213034;213035;213036;213037;213038;213039	213037			6	
ILMLGLDAAGK	1	Unmodified	1100.6264	0.62636629	2005	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	72.801	72.03	2	0.035112	62151	160511_QHF_FH_JSI12i_2	53.517	36.741			0.76332	0.74247	21.673	5	0	Median	0.8847	0.74247	NaN	1	0	Median	0.57715	0.70292	NaN	1	0	Median	0.64772	0.6334	27.587	2	0	Median	0.8602	0.95126	NaN	1	0	Median	387810000	221920000	165890000	64471000	34845000	29626000	84486000	46658000	37827000	138130000	86797000	51333000	100720000	53617000	47105000	25116	2005	23802	157339;157340;157341;157342;157343	213040;213041	213040			0	
ILMPSLSPTMEEGNIVK	1	Unmodified	1857.958	0.95800712	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	3	1	86.75	86.128	2;3	1.5582E-23	75792	160511_QHF_FH_JSI11i_2	130.56	106.96			0.83642	0.9017	11.863	6	4	Median	0.88163	0.76764	NaN	1	1	Median	0.73749	0.9017	6.988	2	0	Median	0.84028	0.85878	13.959	2	2	Median	0.96909	1.0308	NaN	1	1	Median	208200000	115070000	93130000	37004000	20109000	16895000	59415000	35686000	23728000	88529000	47315000	41214000	23255000	11961000	11293000	25117	122	23803	157344;157345;157346;157347;157348;157349;157350	213042;213043;213044;213045;213046;213047;213048;213049;213050;213051	213047			10	
ILMSKPVLSGGTGR	1	Acetyl (K)	1456.8072	0.8071842	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	4	2	1	71.278	61.522	2	6.1328E-07	32127	160513_QHF_FH_JSI12Kac_6	113.22	87.839			1.0129	1.0387	98.038	8	1	Median	1.1631	0.98342	15.878	2	0	Median	0.68793	0.80639	164.09	3	1	Plateau	1.0507	1.0388	17.42	2	0	Median	0.97791	1.0582	NaN	1	0	Median	130700000	64944000	65758000	19795000	8719700	11076000	53957000	29987000	23969000	32564000	14635000	17928000	24386000	11602000	12785000	25118	5410	23804	157351;157352;157353;157354;157355;157356;157357;157358;157359	213052;213053;213054;213055;213056;213057;213058;213059;213060;213061;213062;213063;213064	213062	3402		13	
ILMSKPVLSGGTGR	1	Acetyl (K);Oxidation (M)	1472.8021	0.80209882	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	1	0	1	1			By MS/MS	By MS/MS	14.5	0.5							2	2				1	3	56.892	46.155	2	0.0014547	26108	160513_QHF_FH_JSI12Kac_4	68.551	43.334			0.93993	1.0161	17.37	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1028	1.0863	NaN	1	0	Median	0.81086	0.89141	18.512	2	0	Median	17204000	8639000	8564800	0	0	0	0	0	0	2954400	1441500	1512900	14249000	7197500	7051900	25119	5410	23804	157360;157361;157362;157363	213065;213066;213067;213068	213066	3402	2653	4	
ILMTYSVQDHMETR	0	Unmodified	1722.8069	0.8069262	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6.14	6.24		4	1						2	2	1	2	2	52.229	49.916	3	0.00021458	43838	160511_QHF_FH_JSI9i_2	70.281	58.115			1.0956	1.0789	15.28	6	1	Median	1.2671	1.064	NaN	1	1	Median	0.77506	0.93171	NaN	1	0	Median	1.2393	1.2381	17.494	2	0	Median	0.97266	1.0189	14.13	2	0	Median	345770000	166050000	179720000	61834000	23263000	38572000	56363000	26487000	29876000	68685000	33776000	34909000	158890000	82523000	76365000	25120	5330	23805	157364;157365;157366;157367;157368;157369;157370	213069;213070;213071;213072;213073;213074	213070			6	
ILMVGLDAAGK	1	Unmodified	1086.6107	0.61071622	2125;1944;1137;2126	P61204;P84077;P18085;P84085	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.47	4	4	4				3	5	2	5	6	5	6	67.136	62.659	2	8.19E-13	55740	160511_QHF_FH_JSI10i_2	141.48	95.054			1.0293	1.0579	23.426	20	1	Median	1.0353	0.87863	15.156	5	0	Median	1.0553	1.2399	17.274	5	0	Median	1.0137	1.0062	32.06	5	0	Median	1.1358	1.2597	10.655	5	1	Median	9434700000	4639700000	4795000000	1617000000	788160000	828870000	2305200000	1129900000	1175200000	2945000000	1492900000	1452200000	2567500000	1228700000	1338700000	25121	1944;2125;1137;2126	23806	157371;157372;157373;157374;157375;157376;157377;157378;157379;157380;157381;157382;157383;157384;157385;157386;157387;157388;157389;157390;157391;157392	213075;213076;213077;213078;213079;213080;213081;213082;213083;213084;213085;213086;213087;213088;213089;213090;213091;213092;213093;213094;213095;213096;213097;213098;213099;213100;213101;213102;213103;213104;213105;213106;213107;213108;213109;213110;213111;213112;213113;213114;213115;213116;213117;213118;213119;213120;213121	213115			47	
ILMVGLDAAGK	1	Oxidation (M)	1102.6056	0.60563084	2125;1944;1137;2126	P61204;P84077;P18085;P84085	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	5.71	2		1			1	3	4		1	5	3	2	57.942	50.015	2	0.006314	25324	160513_QHF_FH_JSI12Kac_5	56.916	31.357			1.0576	1.0844	22.142	11	0	Median	1.2006	1.0087	NaN	1	0	Median	0.90866	1.0844	18.831	5	0	Median	1.2625	1.2311	34.101	3	0	Plateau	1.1964	1.2944	15.38	2	0	Median	447580000	211510000	236070000	47226000	22059000	25166000	190890000	91047000	99847000	158540000	72887000	85656000	50918000	25521000	25397000	25122	1944;2125;1137;2126	23806	157393;157394;157395;157396;157397;157398;157399;157400;157401;157402;157403	213122;213123;213124;213125;213126;213127;213128;213129;213130;213131;213132;213133;213134	213133		762	12	
ILNAHMDSLQWIDQNSALLQR	0	Unmodified	2465.2485	0.24852691	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	2	3	90.392	90.049	3;4	2.7235E-59	78068	160511_QHF_FH_JSI12i_3	225.29	214.45			1.0056	1.0042	12.618	8	2	Median	1.2667	1.0905	23.056	2	2	Median	0.92887	1.1346	NaN	1	0	Median	1.0613	1.0459	3.9344	2	0	Median	0.92798	0.98322	8.6575	3	0	Median	1068700000	538300000	530440000	175470000	71427000	104040000	137320000	85077000	52238000	364990000	183380000	181620000	390950000	198410000	192540000	25123	1467	23807	157404;157405;157406;157407;157408;157409;157410;157411	213135;213136;213137;213138;213139;213140;213141;213142;213143;213144;213145;213146	213145			11	
ILNAHMDSLQWIDQNSALLQR	0	Oxidation (M)	2481.2434	0.24344153	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	80.33	80.089	3	0.0003466	71503	160511_QHF_FH_JSI10i_2	49.973	37.044			1.1996	1.2193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1996	1.2193	NaN	1	1	Median	63220000	26671000	36550000	0	0	0	0	0	0	0	0	0	63220000	26671000	36550000	25124	1467	23807	157412;157413	213147;213148	213147		1136	2	
ILNDDTALK	1	Unmodified	1001.5393	0.53932542	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5.33	5.44	1	1				1					2		1	31.218	27.956	2	0.015195	24681	160511_QHF_FH_JSI10i_1	54.712	22.571			1.5557	1.8389	34.163	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3211	1.5887	20.679	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86081	0.93067	NaN	1	0	Median	836070000	428740000	407330000	0	0	0	823550000	422500000	401050000	0	0	0	12519000	6241600	6277400	25125	1831	23808	157414;157415;157416	213149;213150;213151;213152	213149			4	
ILNDQNK	1	Unmodified	843.44503	0.4450311	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	6.7427	6.3839	2	0.01639	4328	160511_QHF_FH_JSI12i_1	63.148	20.233			0.74384	0.79385	30.774	5	1	Median	0.51407	0.42565	NaN	1	1	Median	0.73151	0.87536	9.7538	2	0	Median	0.80993	0.78566	NaN	1	0	Median	0.74384	0.79385	NaN	1	0	Median	1467500000	894470000	573020000	497250000	403620000	93635000	331140000	177850000	153290000	288900000	131000000	157910000	350190000	182010000	168180000	25126	3328	23809	157417;157418;157419;157420;157421	213153;213154;213155	213153			3	
ILNEDGSPNLDFKPEDQPHFDIKDEF	2	Unmodified	3058.4196	0.4196108	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			3									1	2	87.308	87.22	3;4	1.2337E-05	75656	160511_QHF_FH_JSI12i_3	57.278	50.702			1.1519	1.1039	5.6344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.159	1.0608	NaN	1	0	Median	1.1449	1.1488	NaN	1	0	Median	125940000	62510000	63428000	0	0	0	0	0	0	27989000	15228000	12761000	97949000	47282000	50667000	25127	5428	23810	157422;157423;157424	213156;213157	213157			2	
ILNEKPTTDEPEK	2	Unmodified	1512.7672	0.7671531	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		2	6							1		3	4	19.353	19.208	2;3	0.00026275	15498	160511_QHF_FH_JSI12i_3	81.865	57.483			0.89547	0.85286	50.162	5	3	Median	0.46511	0.39639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2431	1.1735	45.134	2	1	Median	0.7958	0.82148	13.213	2	1	Median	256650000	148000000	108640000	66569000	44077000	22492000	0	0	0	81986000	45019000	36967000	108090000	58909000	49184000	25128	4673	23811	157425;157426;157427;157428;157429;157430;157431;157432	213158;213159;213160;213161;213162;213163;213164;213165	213165			8	
ILNEKVNTPTTTVYR	1	Acetyl (K)	1789.9574	0.95741349	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		62.441	51.38	2	0.0014983	29047	160513_QHF_FH_JSI11Kac_4	96.103	73.905			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1769700	1769700	0	0	0	0	0	0	0	1769700	1769700	0	0	0	0	25129	1282	23812	157433	213166	213166	1200		1	
ILNEMRDQYEK	1	Unmodified	1437.6922	0.69221402	65	Q04695;CON__Q04695;P02533;CON__P02533;CON__Q6IFX2	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									3	1	25.661	25.563	2;3	0.0012449	21752	160511_QHF_FH_JSI11i_3	101.38	72.219		+	1.0619	1.0168	73.097	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7285	1.6225	62.308	3	3	Median	0.43888	0.45155	NaN	1	1	Median	546960000	277240000	269720000	0	0	0	0	0	0	339730000	136720000	203010000	207230000	140520000	66709000	25130	65	23813	157434;157435;157436;157437	213167;213168;213169;213170	213168			4	
ILNEPLK	1	Unmodified	825.496	0.49600404	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		28.772	28.068	2	0.056414	23591	160511_QHF_FH_JSI11i_2	41.652	13.23			1.1337	1.0717	12.195	2	0	Median	1.3479	1.1682	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95345	0.98313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168700000	82838000	85864000	77804000	36432000	41371000	0	0	0	90898000	46406000	44493000	0	0	0	25131	5566	23814	157438;157439	213171	213171			1	
ILNFLMHPK	1	Unmodified	1111.6212	0.62122133	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.86		4	10						5	5	5	5	4	60.806	57.633	2;3	0.00013851	47498	160511_QHF_FH_JSI9i_3	87.639	72.966			1.4622	1.5189	137.2	16	16	Median	3.6478	3.0243	136.63	4	4	Median	0.55706	0.65765	195.1	4	4	Median	0.82835	0.80048	89.81	4	4	Median	1.0342	1.0589	134.21	4	4	Median	2860500000	1415800000	1444600000	599690000	179040000	420650000	309820000	161930000	147880000	830580000	480090000	350490000	1120400000	594790000	525590000	25132	1444	23815	157440;157441;157442;157443;157444;157445;157446;157447;157448;157449;157450;157451;157452;157453;157454;157455;157456;157457;157458	213172;213173;213174;213175;213176;213177;213178;213179;213180;213181;213182;213183;213184;213185;213186;213187;213188;213189;213190;213191;213192;213193;213194;213195	213181			24	
ILNFLMHPK	1	Oxidation (M)	1127.6161	0.61613595	1444	P35659	DEK	Protein DEK	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			48.99	47.402	3	0.015472	38708	160511_QHF_FH_JSI9i_3	34.563	20.445			1.1028	1.0614	33.638	2	1	Median	1.6896	1.3464	NaN	1	0	Median	0.71975	0.83672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82601000	38548000	44053000	49490000	20617000	28872000	33112000	17931000	15180000	0	0	0	0	0	0	25133	1444	23815	157459;157460	213196;213197	213197		1121	2	
ILNHFDVQLPESMEDDGLSER	0	Unmodified	2443.1326	0.13255368	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	79.786	79.666	3	2.9439E-08	71197	160511_QHF_FH_JSI11i_3	95.957	90.7			1.1488	1.138	1.394	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1846	1.1268	NaN	1	0	Median	1.114	1.1493	NaN	1	0	Median	102120000	46449000	55673000	0	0	0	0	0	0	61086000	26693000	34393000	41035000	19756000	21279000	25134	557	23816	157461;157462	213198;213199;213200;213201;213202	213199			5	
ILNHSVDK	1	Unmodified	924.50288	0.50288033	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	8.0271	7.9573	2;3	0.0035516	6092	160511_QHF_FH_JSI11i_3	71.692	0			1.3839	1.546	72.63	4	3	Median	NaN	NaN	NaN	0	0	Median	1.2956	1.5864	NaN	1	1	Median	0.9085	0.85681	NaN	1	0	Median	2.6925	2.7047	82.744	2	2	Median	595460000	251590000	343870000	0	0	0	58483000	23909000	34574000	228010000	98888000	129130000	308970000	128790000	180170000	25135	2578	23817	157463;157464;157465;157466	213203;213204;213205;213206;213207	213204			5	
ILNHSVDKK	2	Unmodified	1052.5978	0.59784335	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	6.4287	6.1208	2;3	0.0042794	4051	160511_QHF_FH_JSI9i_3	50.292	0			0.14553	0.13866	10.09	2	2	Median	0.16287	0.12911	NaN	1	1	Median	0.13003	0.14891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1494300000	1443000000	51308000	962200000	927500000	34699000	510890000	494280000	16609000	0	0	0	21210000	21210000	0	25136	2578	23818	157467;157468;157469;157470	213208;213209;213210;213211	213209			4	
ILNIFGVIK	1	Unmodified	1015.643	0.64300263	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	90.647	86.99	2	2.7824E-06	79641	160511_QHF_FH_JSI12i_2	125.25	90.445			0.98437	0.96127	10.313	13	0	Median	1.1696	0.95729	8.0762	4	0	Median	0.83331	0.96127	3.6216	3	0	Plateau	0.98437	1.0045	14.22	3	0	Median	1.0442	1.0708	16.987	3	0	Plateau	11930000000	6074900000	5854900000	2763900000	1277700000	1486200000	3024400000	1693900000	1330500000	3943000000	2026000000	1917000000	2198500000	1077300000	1121200000	25137	793	23819	157471;157472;157473;157474;157475;157476;157477;157478;157479;157480;157481;157482;157483	213212;213213;213214;213215;213216;213217;213218;213219;213220;213221;213222;213223;213224;213225;213226;213227;213228;213229;213230;213231;213232;213233;213234;213235;213236;213237;213238;213239;213240;213241;213242;213243;213244	213216			33	
ILNLSGNELK	1	Unmodified	1099.6237	0.62372375	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		50.25	49.408	2	0.0070661	43602	160511_QHF_FH_JSI10i_2	53.493	9.6857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25138	5257	23820	157484;157485;157486	213245;213246;213247	213247			3	
ILNNSGLPITSAIDLEDAAK	1	Unmodified	2054.0895	0.089549874	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	3	1	1	92.208	91.808	2;3	2.7727E-18	83520	160511_QHF_FH_JSI12i_1	193.96	164.66			1.0811	1.0766	2.9713	4	0	Median	1.3283	1.1018	NaN	1	0	Median	0.89232	1.0688	NaN	1	0	Median	1.1641	1.0846	NaN	1	0	Median	1.0041	1.028	NaN	1	0	Median	247570000	127410000	120160000	44374000	21223000	23152000	64360000	32273000	32087000	69590000	36111000	33478000	69245000	37801000	31445000	25139	4122	23821	157487;157488;157489;157490;157491;157492	213248;213249;213250;213251;213252;213253;213254;213255;213256;213257	213250			10	
ILNPEEIEK	1	Unmodified	1083.5812	0.58119023	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.87	5	3				1	1			2	1	2	5	43.761	41.934	2	0.00015606	36420	160511_QHF_FH_JSI9i_2	88.819	74.15			1.0519	1.1309	15.429	8	1	Median	1.6992	1.4175	23.649	2	0	Median	0.94239	1.0916	NaN	1	0	Median	1.1105	1.1031	9.89	2	0	Median	1.0218	1.1396	4.9756	3	1	Plateau	6254100000	2439900000	3814200000	1092000000	355580000	736380000	1323700000	533600000	790100000	2064800000	786140000	1278700000	1773600000	764590000	1009100000	25140	209	23822	157493;157494;157495;157496;157497;157498;157499;157500;157501;157502	213258;213259;213260;213261;213262;213263;213264;213265;213266;213267;213268;213269;213270;213271;213272	213268			15	
ILNPHGIPLGPLDFSTK	1	Unmodified	1818.004	0.003969751	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	3	1	86.396	85.607	3	0.00011524	76371	160511_QHF_FH_JSI11i_3	76.713	65.769			0.83098	0.90994	44.664	5	3	Median	1.264	1.0871	NaN	1	1	Median	0.75322	0.87757	NaN	1	1	Median	0.61015	0.59178	70.578	2	1	Median	0.83098	0.90994	NaN	1	0	Median	260110000	191020000	69085000	6553000	3014000	3539100	10174000	6112400	4061900	220820000	169580000	51243000	22555000	12314000	10240000	25141	3379	23823	157503;157504;157505;157506;157507;157508	213273;213274;213275;213276;213277;213278	213273			5	
ILNSYTPIDDFEK	1	Unmodified	1553.7613	0.76133944	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.537	67.932	2	0.0018747	61921	160511_QHF_FH_JSI12i_1	71.153	38.833			2.0464	2.1544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0464	2.1544	NaN	1	1	Median	21641000	7316200	14325000	0	0	0	0	0	0	0	0	0	21641000	7316200	14325000	25142	4932	23824	157509	213279	213279			1	
ILNVDEFVK	1	Unmodified	1075.5914	0.59136099	5033	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		72.778	72.286	2	0.054641	65592	160511_QHF_FH_JSI11i_1	34.808	2.8733			1.0357	0.87234	13.036	3	0	Plateau	1.0477	0.87136	NaN	1	0	Median	0.95127	1.1265	NaN	1	0	Median	0.98695	0.9531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	227380000	112870000	114510000	87432000	44572000	42860000	62087000	27728000	34359000	77858000	40571000	37287000	0	0	0	25143	5033	23825	157510;157511;157512	213280	213280			1	
ILPAAALASEHSK	1	Unmodified	1306.7245	0.72450043	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	38.755	38.665	3	0.0031002	33888	160511_QHF_FH_JSI11i_3	45.207	40.221			1.0945	1.0641	8.826	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.088	0.99972	NaN	1	0	Median	1.1009	1.1326	NaN	1	1	Median	432280000	210700000	221580000	0	0	0	0	0	0	153480000	69455000	84029000	278800000	141250000	137550000	25144	3285	23826	157513;157514;157515	213281;213282;213283;213284	213281			4	
ILPDGEDFLAVQTSQGVPVRR	0	Unmodified	2296.2175	0.21754435	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			77.483	76.524	3	0.0002541	64169	160511_QHF_FH_JSI10i_3	51.348	33.753			1.4259	1.0667	22.568	3	0	Plateau	1.4733	1.2329	NaN	1	0	Median	1.0996	1.3112	31.518	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178830000	83874000	94959000	62433000	25795000	36638000	116400000	58079000	58321000	0	0	0	0	0	0	25145	280	23827	157516;157517;157518	213285;213286	213285			2	
ILPDILK	1	Unmodified	810.52149	0.52149051	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	64.643	63.74	2	0.0077995	54954	160511_QHF_FH_JSI12i_2	86.086	31.561			1.0841	1.0631	11.35	4	0	Median	1.1213	0.9821	NaN	1	0	Median	0.76732	0.92476	NaN	1	0	Median	1.1358	1.1508	NaN	1	0	Median	1.0482	1.1584	NaN	1	0	Median	742190000	380100000	362080000	125740000	64356000	61381000	145800000	90893000	54903000	270190000	138560000	131630000	200470000	86294000	114170000	25146	957	23828	157519;157520;157521;157522;157523	213287;213288;213289;213290;213291;213292;213293;213294;213295;213296;213297;213298	213289			12	
ILPDILKK	2	Unmodified	938.61645	0.61645353	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	2	2	2	53.143	52.254	3	0.0012315	45792	160511_QHF_FH_JSI11i_3	69.825	28.796			0.41903	0.44435	41.932	6	6	Median	0.31255	0.25794	57.598	2	2	Median	0.3597	0.44435	2.648	2	2	Median	0.51845	0.48828	NaN	1	1	Median	0.54014	0.5517	NaN	1	1	Median	560470000	293460000	267010000	93289000	54126000	39163000	105690000	68010000	37680000	109700000	55079000	54625000	251790000	116250000	135540000	25147	957	23829	157524;157525;157526;157527;157528;157529;157530;157531;157532	213299;213300;213301;213302;213303;213304;213305;213306;213307;213308;213309;213310;213311	213301			13	
ILPDLNTVVWVWQSLK	1	Unmodified	1910.0666	0.066570008	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			1	2	99.903	90.469	2;3	0.0016046	51943	160513_QHF_FH_JSI11Kac_6	63.681	57.971			1.5171	1.5701	23.751	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6009	1.5701	NaN	1	1	Median	1.2352	1.3096	30.145	2	2	Median	199290000	78478000	120810000	0	0	0	0	0	0	42380000	15833000	26547000	156910000	62645000	94265000	25148	405	23830	157533;157534;157535	213312;213313;213314	213312			3	
ILPEAHQR	0	Unmodified	962.52976	0.52976379	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	4	2	2	11.108	10.585	2;3	0.0018652	8399	160511_QHF_FH_JSI9i_2	58.596	40.561			0.95629	1.0889	26.199	5	5	Median	1.3211	1.0889	NaN	1	1	Median	1.1169	1.3227	16.273	2	2	Median	0.86122	0.87925	NaN	1	1	Median	0.70512	0.75512	NaN	1	1	Median	1374800000	727730000	647030000	395120000	195480000	199630000	608560000	314710000	293850000	288880000	173230000	115650000	82197000	44305000	37892000	25149	1283	23831	157536;157537;157538;157539;157540;157541;157542;157543;157544;157545	213315;213316;213317;213318;213319;213320;213321;213322;213323;213324	213318			10	
ILPEEITNLR	0	Unmodified	1196.6765	0.6764876	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.012	64.111	2	0.0011253	55084	160511_QHF_FH_JSI12i_2	78.516	38.248			1.0289	0.95855	16.458	4	4	Median	1.1269	0.95508	NaN	1	1	Median	0.6843	0.84143	NaN	1	1	Median	0.93935	0.96202	NaN	1	1	Median	1.1361	1.2455	NaN	1	1	Median	722900000	290060000	432840000	116980000	47607000	69377000	132680000	82809000	49871000	227910000	98943000	128970000	245320000	60705000	184620000	25150	4803	23832	157546;157547;157548;157549	213325;213326;213327;213328	213325			4	
ILPEIIPILEEGLR	0	Unmodified	1603.9549	0.95489429	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	3	2	3	102.39	102.3	2;3	3.4768E-21	88175	160511_QHF_FH_JSI12i_2	169.58	134.07			1.6487	1.7622	36.113	10	2	Median	2.2299	1.9247	45.227	2	0	Median	1.3765	1.673	36.783	3	1	Median	2.1088	2.1292	36.802	2	0	Median	2.241	2.5728	42.667	3	1	Plateau	1829300000	612590000	1216700000	277300000	73723000	203580000	373920000	178470000	195440000	504520000	117290000	387240000	673560000	243100000	430460000	25151	3860	23833	157550;157551;157552;157553;157554;157555;157556;157557;157558;157559	213329;213330;213331;213332;213333;213334;213335;213336;213337	213329			9	
ILPEQGLMLTGSADK	1	Unmodified	1571.8229	0.82289384	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	69.18	68.447	2	0.00072444	59853	160511_QHF_FH_JSI11i_2	85.845	59.802			0.94778	0.98854	16.122	8	3	Median	0.98482	0.84883	15.093	2	1	Median	0.93594	1.1188	6.4606	2	0	Median	0.92588	0.90926	11.709	2	1	Median	1.0082	1.1062	15.792	2	1	Median	604940000	292670000	312270000	125120000	63242000	61880000	162300000	75009000	87292000	177510000	86069000	91442000	140010000	68353000	71653000	25152	5495	23834	157560;157561;157562;157563;157564;157565;157566;157567	213338;213339;213340;213341;213342;213343;213344;213345;213346;213347	213346			10	
ILPEYLSNWTMEK	1	Unmodified	1622.8014	0.80143012	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.593	3	9	2							3	4	4	3	87.371	86.916	2;3	1.1027E-10	75279	160511_QHF_FH_JSI12i_2	152.07	127.78			0.79404	0.9112	40.907	14	5	Median	1.2075	1.0113	79.871	3	2	Median	0.76739	0.92214	13.375	4	2	Median	0.94941	0.93354	15.995	4	0	Median	0.82795	0.92053	50.196	3	1	Plateau	1621400000	833360000	788000000	281910000	147830000	134080000	518160000	272200000	245960000	550560000	269660000	280900000	270720000	143670000	127060000	25153	736	23835	157568;157569;157570;157571;157572;157573;157574;157575;157576;157577;157578;157579;157580;157581	213348;213349;213350;213351;213352;213353;213354;213355;213356;213357;213358;213359;213360;213361;213362;213363;213364;213365;213366;213367;213368;213369;213370;213371;213372;213373	213351			26	
ILPGNMK	1	Unmodified	771.4313	0.43129529	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.8	0.4	1	4								1	3	1		25.741	25.044	2	0.011089	20884	160511_QHF_FH_JSI11i_2	72.021	64.607			0.60418	0.70269	44.271	5	1	Median	0.55805	0.47963	NaN	1	1	Median	1.0411	1.2788	34.569	3	0	Plateau	0.59464	0.61908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2252700000	1148900000	1103800000	466600000	238090000	228510000	1085700000	570380000	515300000	700410000	340460000	359950000	0	0	0	25154	1664	23836	157582;157583;157584;157585;157586	213374;213375;213376;213377	213376			4	
ILPGPHFEER	0	Unmodified	1193.6193	0.61930707	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	37.75	37.587	3	0.00035705	31948	160511_QHF_FH_JSI12i_3	68.069	42.632			0.82512	0.8281	7.8209	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82512	0.8281	7.8209	2	2	Median	243600000	142280000	101320000	0	0	0	0	0	0	0	0	0	243600000	142280000	101320000	25155	3972	23837	157587;157588;157589	213378;213379;213380	213380			3	
ILPHHQNTGGFFVAVLVK	1	Unmodified	1976.0996	0.099601471	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	77.534	68.542	3;4	0.00047235	37532	160513_QHF_FH_JSI11Kac_6	60.768	54.758			1.0683	0.72279	27.287	4	1	Linear	0.91639	0.76929	2.3551	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2379	1.1448	NaN	1	0	Median	1.224	1.3047	NaN	1	0	Median	449650000	247840000	201810000	358480000	210100000	148380000	0	0	0	61127000	21556000	39572000	30039000	16179000	13860000	25156	2282	23838	157590;157591;157592;157593	213381;213382;213383;213384;213385;213386	213381			6	
ILPIMFASLYK	1	Unmodified	1294.7359	0.73591674	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	97.127	92.912	2	9.065E-06	88174	160511_QHF_FH_JSI12i_3	111.46	61.329			0.62742	0.41676	50.689	8	8	Linear	0.69984	0.58181	48.891	2	2	Median	0.59105	0.69452	41.6	2	2	Median	0.62303	0.58307	28.407	2	2	Median	0.98905	1.0068	95.198	2	2	Median	1902600000	1172300000	730300000	488180000	301250000	186920000	500840000	321010000	179830000	524090000	321690000	202400000	389490000	228360000	161140000	25157	2640	23839	157594;157595;157596;157597;157598;157599;157600;157601	213387;213388;213389;213390;213391;213392;213393;213394	213392			8	
ILPIMFPSLYR	0	Unmodified	1348.7577	0.75771481	2394	Q13362	PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	1	2	96.177	91.376	2	0.00056168	49288	160513_QHF_FH_JSI10Kac_6	89.247	32.07			0.80714	0.8372	20.396	5	1	Median	0.97399	0.82692	NaN	1	0	Median	0.71788	0.84406	NaN	1	1	Median	1.3502	1.263	NaN	1	0	Median	0.75122	0.78934	8.3254	2	0	Median	587040000	310900000	276140000	95416000	52577000	42839000	171050000	87478000	83568000	160220000	66509000	93709000	160360000	104340000	56024000	25158	2394	23840	157602;157603;157604;157605;157606	213395;213396;213397	213397			3	
ILPNYHHLK	1	Unmodified	1133.6346	0.63456321	124	O00399	DCTN6	Dynactin subunit 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	24.826	24.496	3	0.00068486	20197	160511_QHF_FH_JSI12i_3	52.255	37.581			0.5238	0.46012	66.323	4	3	Linear	NaN	NaN	NaN	0	0	Median	2.8933	3.3272	NaN	1	1	Median	1.0699	0.99575	21.434	2	2	Median	0.76192	0.78804	NaN	1	0	Median	439260000	206130000	233130000	0	0	0	50923000	14574000	36348000	203980000	102170000	101810000	184360000	89393000	94966000	25159	124	23841	157607;157608;157609;157610	213398;213399;213400;213401;213402;213403	213403			6	
ILPQDVILK	1	Unmodified	1037.6485	0.64848194	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	68.37	67.443	2	0.0015914	58861	160511_QHF_FH_JSI11i_2	68.383	58.117			0.92046	0.94035	9.3256	3	0	Median	0.92046	0.8164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93838	0.94035	NaN	1	0	Median	0.86352	0.97356	NaN	1	0	Median	164600000	92616000	71985000	46286000	30085000	16202000	0	0	0	68049000	37003000	31046000	50266000	25529000	24737000	25160	4096	23842	157611;157612;157613	213404;213405;213406;213407	213407			4	
ILPQYIFNSR	0	Unmodified	1249.6819	0.68190733	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	69.225	68.574	2	0.00017476	61026	160511_QHF_FH_JSI11i_3	94.309	49.915			0.85922	0.83301	36.374	5	4	Median	1.0061	0.83301	NaN	1	1	Median	0.85922	1.0388	NaN	1	0	Median	1.2028	1.1477	63.819	2	2	Median	0.78978	0.79786	NaN	1	1	Median	344900000	172640000	172260000	75250000	35764000	39485000	84290000	51996000	32294000	129740000	55996000	73747000	55617000	28881000	26736000	25161	454	23843	157614;157615;157616;157617;157618	213408;213409;213410;213411;213412	213409			5	
ILPSLEDTLSLVK	1	Unmodified	1426.8283	0.8282968	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.77	100.64	2	0.00024288	88368	160511_QHF_FH_JSI9i_2	77.744	42.299			0.97956	1.0174	1.5187	4	1	Linear	1.2556	1.0617	NaN	1	0	Median	0.85257	1.0311	NaN	1	0	Median	0.98468	1.0258	NaN	1	0	Median	0.97448	1.0412	NaN	1	1	Median	126220000	60818000	65407000	22077000	10905000	11172000	26667000	13996000	12671000	36823000	17930000	18892000	40657000	17986000	22671000	25162	5100	23844	157619;157620;157621;157622	213413;213414;213415;213416	213414			4	
ILPTLEAVAALGNK	1	Unmodified	1408.829	0.8289655	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.799	6	8	10							5	7	6	6	91.852	91.41	2;3	1.7471E-21	80454	160511_QHF_FH_JSI11i_2	176.48	129.29			1.0334	1.0355	27.097	22	7	Median	1.1568	0.98748	10.263	4	1	Median	0.68948	0.81156	33.386	7	4	Median	1.1084	1.0795	27.05	6	2	Plateau	0.96663	1.0372	19.291	5	0	Median	2293700000	1145200000	1148500000	332090000	150070000	182020000	500160000	303870000	196290000	757840000	350950000	406890000	703640000	340350000	363290000	25163	2324	23845	157623;157624;157625;157626;157627;157628;157629;157630;157631;157632;157633;157634;157635;157636;157637;157638;157639;157640;157641;157642;157643;157644;157645;157646	213417;213418;213419;213420;213421;213422;213423;213424;213425;213426;213427;213428;213429;213430;213431;213432;213433;213434;213435;213436;213437;213438;213439;213440;213441;213442;213443;213444;213445;213446;213447;213448;213449;213450;213451;213452;213453;213454;213455;213456;213457;213458;213459;213460;213461;213462;213463;213464;213465;213466;213467;213468;213469;213470;213471;213472;213473;213474;213475;213476;213477;213478;213479	213463			63	
ILPVAASYSAVTR	0	Unmodified	1346.7558	0.75580056	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	59.394	58.863	2	0.0016873	50646	160511_QHF_FH_JSI12i_3	72.434	45.13			0.74142	0.78782	40.471	4	3	Median	1.257	1.0817	NaN	1	1	Median	0.82161	0.98042	NaN	1	0	Median	0.66905	0.63305	NaN	1	1	Median	0.44428	0.45164	NaN	1	1	Median	295740000	164270000	131470000	38335000	16754000	21581000	49560000	28251000	21309000	106550000	59704000	46841000	101290000	59558000	41736000	25164	4398	23846	157647;157648;157649;157650	213480;213481;213482;213483;213484	213484			5	
ILPVFDEPPNPTNVEESLK	1	Unmodified	2137.0943	0.094300901	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	9	6								5	3	4	3	95.034	94.723	2;3	7.468E-18	86167	160511_QHF_FH_JSI11i_1	159	137.75			0.9339	0.94424	16.67	14	2	Median	0.98675	0.81918	13.417	4	2	Median	0.90802	1.0603	12.951	3	0	Plateau	1.0872	0.96447	12.067	4	0	Linear	0.93058	0.96507	31.145	3	0	Median	489910000	253420000	236490000	88574000	38498000	50076000	116740000	66455000	50281000	181180000	100990000	80195000	103420000	47477000	55940000	25165	5130	23847	157651;157652;157653;157654;157655;157656;157657;157658;157659;157660;157661;157662;157663;157664;157665	213485;213486;213487;213488;213489;213490;213491;213492;213493;213494;213495;213496;213497;213498;213499;213500;213501;213502;213503;213504;213505;213506;213507;213508;213509;213510;213511;213512;213513;213514	213486			30	
ILPVGGIK	1	Unmodified	795.52182	0.52182486	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		44.332	43.602	2	0.0033731	38170	160511_QHF_FH_JSI9i_2	73.039	6.0453			1.0076	1.1444	9.3701	4	0	Median	1.5016	1.2777	NaN	1	0	Median	0.89172	1.0721	7.4392	2	0	Median	1.1188	1.1589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1397400000	572460000	824930000	325280000	116060000	209220000	451390000	200210000	251180000	620720000	256180000	364540000	0	0	0	25166	1459	23848	157666;157667;157668;157669	213515;213516;213517	213515			3	
ILPVNLK	1	Unmodified	795.52182	0.52182486	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.728	1	2	4							1	1	3	2	45.246	44.433	2	0.018612	37198	160511_QHF_FH_JSI12i_2	59.641	6.0866			1.1941	1.1453	16.357	7	0	Median	1.2244	0.98734	NaN	1	0	Median	1.1941	1.4152	NaN	1	0	Median	1.4601	1.3809	12.693	3	0	Plateau	1.1856	1.2552	24.465	2	0	Median	1096300000	491610000	604700000	124380000	50855000	73522000	94813000	50153000	44660000	334100000	165000000	169100000	543010000	225600000	317410000	25167	5376	23849	157670;157671;157672;157673;157674;157675;157676	213518;213519;213520;213521;213522;213523;213524	213520			7	
ILPVYEQGSHFQPSTVEMVDGETSPPK	1	Unmodified	2971.4273	0.42733871	2422	Q13472	TOP3A	DNA topoisomerase 3-alpha	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		74.819	74.819	3	8.6602E-07	66779	160511_QHF_FH_JSI11i_3	62.237	51.694			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14849000	0	14849000	0	0	0	0	0	0	14849000	0	14849000	0	0	0	25168	2422	23850	157677	213525;213526	213526			2	
ILPWYPK	1	Unmodified	915.52182	0.52182486	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.011	63.477	2	0.03714	55270	160511_QHF_FH_JSI11i_2	50.039	25.041			1.0825	1.0878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0825	1.0878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	104570000	54358000	50209000	0	0	0	0	0	0	104570000	54358000	50209000	0	0	0	25169	3675	23851	157678	213527	213527			1	
ILQAGFK	1	Unmodified	775.45922	0.4592246	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.22	2	4	3						1	2	3	3	2	29.822	28.028	2	0.02555	23492	160511_QHF_FH_JSI12i_2	54.525	37.598			0.87031	0.91501	59.989	10	4	Median	1.0901	0.90281	61.84	2	0	Median	0.40864	0.50771	85.086	3	3	Median	0.80185	0.82762	69.516	3	1	Median	1.0199	1.1197	14.353	2	0	Median	2028100000	1153300000	874750000	406410000	199590000	206820000	553150000	332640000	220510000	550850000	359250000	191590000	517660000	261820000	255830000	25170	2698	23852	157679;157680;157681;157682;157683;157684;157685;157686;157687;157688	213528;213529;213530;213531;213532;213533;213534;213535;213536;213537	213529			10	
ILQAGFKR	1	Unmodified	931.56034	0.56033563	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.609	5.0861	3	0.048308	3031	160511_QHF_FH_JSI9i_3	16.203	0			1.2441	1.0524	NaN	1	0	Median	1.2441	1.0524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3324100000	1200700000	2123400000	3324100000	1200700000	2123400000	0	0	0	0	0	0	0	0	0	25171	2698	23853	157689	213538	213538			1	
ILQALHLQFGK	1	Unmodified	1266.7448	0.74484194	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.4	6.43			3						4	2		3	2	69.299	63.772	2;3	0.00053424	56634	160511_QHF_FH_JSI11i_3	72.434	66.775			0.25333	0.22605	108.64	6	6	Median	0.94359	0.77542	179.79	2	2	Median	NaN	NaN	NaN	0	0	Median	0.23542	0.22084	8.7643	2	2	Median	0.21585	0.22024	74.362	2	2	Median	850100000	558750000	291340000	252880000	111480000	141400000	0	0	0	396220000	290470000	105740000	201000000	156810000	44197000	25172	5485	23854	157690;157691;157692;157693;157694;157695;157696	213539;213540;213541;213542;213543;213544;213545;213546	213539			8	
ILQAVNFPFLVK	1	Unmodified	1387.8228	0.82275791	1121	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.77	100.65	2	1.56E-05	86563	160511_QHF_FH_JSI12i_2	113.62	65.799			0.88777	0.99803	19.465	4	0	Median	1.4893	1.3025	NaN	1	0	Median	0.76332	0.92431	NaN	1	0	Median	0.82023	0.83269	NaN	1	0	Median	0.96087	1.0776	NaN	1	0	Median	255660000	134450000	121220000	45739000	19128000	26610000	50857000	32597000	18260000	89528000	43519000	46009000	69537000	39201000	30335000	25173	1121	23855	157697;157698;157699;157700	213547;213548;213549;213550	213547			3	
ILQAVNFPFLVR	0	Unmodified	1415.8289	0.82890592	1215	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				100.94	100.73	2	0.0013935	81668	160511_QHF_FH_JSI9i_3	75.378	57.067			0.90502	0.73604	NaN	1	1	Median	0.90502	0.73604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26935000	16025000	10910000	26935000	16025000	10910000	0	0	0	0	0	0	0	0	0	25174	1215	23856	157701	213551	213551			1	
ILQDGGLQVVEK	1	Unmodified	1297.7242	0.72416608	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	49.496	48.807	2	8.4209E-07	39901	160511_QHF_FH_JSI9i_3	102.53	51.726			0.90857	0.94936	22.419	10	2	Median	1.0936	0.92018	6.0405	2	0	Median	0.8661	1.0506	13.81	2	0	Median	0.97023	0.94586	29.257	3	1	Plateau	0.96473	1.0141	26.189	3	1	Plateau	14893000000	7772400000	7120600000	3359700000	1658000000	1701700000	3967000000	2266700000	1700300000	3639800000	1878100000	1761700000	3926500000	1969700000	1956800000	25175	309	23857	157702;157703;157704;157705;157706;157707;157708;157709;157710;157711;157712;157713	213552;213553;213554;213555;213556;213557;213558;213559;213560;213561;213562;213563;213564;213565;213566;213567;213568;213569;213570;213571	213562			20	
ILQDIASGSHPFSQVLK	1	Unmodified	1838.989	0.98904797	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							3	1	1		66.747	65.919	2;3	2.6275E-10	58785	160511_QHF_FH_JSI11i_3	159.02	116.47			1.7691	2.0671	75.186	5	5	Median	2.3998	2.0671	42.016	3	3	Median	1.7691	2.1795	NaN	1	1	Median	0.48755	0.45505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	886030000	275250000	610780000	519920000	147860000	372060000	346240000	109980000	236260000	19877000	17411000	2466100	0	0	0	25176	1306	23858	157714;157715;157716;157717;157718	213572;213573;213574;213575;213576	213572			5	
ILQDIASGSHPFSQVLKEAK	2	Acetyl (K)	2209.1743	0.17428256	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.338	69.024	3	0.024573	37782	160513_QHF_FH_JSI11Kac_6	44.258	27.179			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20061000	20061000	0	0	0	0	0	0	0	20061000	20061000	0	0	0	0	25177	1306	23859	157719	213577	213577	1241		1	
ILQDVADEEIAALPR	0	Unmodified	1651.8781	0.87810054	447	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	74.835	74.331	2;3	2.0353E-08	67361	160511_QHF_FH_JSI10i_1	86.497	66.034			0.88391	0.90753	78.777	5	1	Median	1.1072	0.90753	NaN	1	0	Median	0.86584	1.0061	NaN	1	0	Median	0.74859	0.74324	NaN	1	0	Median	2.0916	2.1347	122.05	2	1	Median	399050000	176620000	222430000	80822000	37051000	43770000	104230000	42019000	62211000	102880000	49738000	53145000	111110000	47813000	63300000	25178	447	23860	157720;157721;157722;157723;157724;157725;157726;157727	213578;213579;213580;213581;213582;213583;213584;213585;213586;213587	213586			10	
ILQEAGADISK	1	Unmodified	1143.6136	0.61355299	3994	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.905	28.987	2	6.943E-05	26069	160511_QHF_FH_JSI12i_1	101.38	62.418			0.51206	0.4744	90.77	2	2	Median	1.1148	0.90135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23521	0.24969	NaN	1	1	Median	65911000	43078000	22833000	26601000	11270000	15331000	0	0	0	0	0	0	39310000	31808000	7502500	25179	3994	23861	157728;157729	213588;213589	213588			2	
ILQEAQNLMALTNVDTPLK	1	Unmodified	2111.1296	0.12964055	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	3	2	97.016	96.777	3	2.6363E-11	85750	160511_QHF_FH_JSI10i_2	131.11	110.18			1.0023	0.93014	44.146	10	4	Median	0.90596	0.75456	34.396	2	0	Median	0.68373	0.80072	60.451	3	2	Median	0.94595	0.89904	39.771	3	2	Median	1.3926	1.4793	36.468	2	0	Median	307680000	165060000	142620000	56874000	28801000	28073000	93089000	60285000	32804000	93238000	44627000	48611000	64476000	31348000	33129000	25180	4271	23862	157730;157731;157732;157733;157734;157735;157736;157737;157738;157739	213590;213591;213592;213593;213594;213595;213596;213597;213598;213599;213600;213601;213602;213603	213603			14	
ILQEDPTNTAAR	0	Unmodified	1327.6732	0.67319314	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.47	22.926	2	1.3195E-05	20180	160511_QHF_FH_JSI12i_1	115.78	79.386			0.99305	0.98277	8.9773	4	0	Median	1.2247	1.0042	NaN	1	0	Median	0.73745	0.85728	NaN	1	0	Median	0.98415	0.96182	NaN	1	0	Median	1.002	1.0588	NaN	1	0	Median	478960000	237870000	241100000	106840000	44979000	61856000	121490000	71489000	50004000	141670000	68378000	73288000	108970000	53019000	55950000	25181	2597	23863	157740;157741;157742;157743	213604;213605;213606;213607;213608	213606			5	
ILQEDPTNTAARK	1	Unmodified	1455.7682	0.76815616	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	18.319	18.345	3	0.047939	14858	160511_QHF_FH_JSI12i_3	27.029	6.076			1.99	2.0033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.99	2.0033	NaN	1	1	Median	26357000	10225000	16132000	0	0	0	0	0	0	0	0	0	26357000	10225000	16132000	25182	2597	23864	157744	213609	213609			1	
ILQEGVDPK	1	Unmodified	997.54441	0.5444108	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.204	22.665	2	0.024179	19723	160511_QHF_FH_JSI10i_1	41.448	18.02			0.92057	0.90459	11.524	4	0	Median	1.0232	0.84608	NaN	1	0	Median	0.92616	1.0881	NaN	1	0	Median	0.88747	0.86163	NaN	1	0	Median	0.91502	0.94969	NaN	1	0	Median	1602500000	851020000	751490000	366170000	193490000	172670000	356900000	172030000	184880000	359890000	205210000	154680000	519550000	280290000	239270000	25183	1507	23865	157745;157746;157747;157748	213610;213611;213612	213611			3	
ILQEHEQIK	1	Unmodified	1136.619	0.61897272	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.4		7						2		1	3	3	2	16.275	13.751	2;3	0.00025641	11150	160511_QHF_FH_JSI11i_2	97.565	56.136			0.97196	1.1065	19.073	9	6	Median	1.3068	1.1086	NaN	1	0	Median	0.82202	1.0156	24.287	3	2	Median	1.1479	1.1834	27.515	3	2	Median	0.92996	1.0497	7.4567	2	2	Median	2297900000	1070100000	1227800000	244430000	110700000	133730000	480440000	258590000	221840000	1007300000	426350000	580930000	565720000	274420000	291300000	25184	2502	23866	157749;157750;157751;157752;157753;157754;157755;157756;157757	213613;213614;213615;213616;213617;213618;213619;213620;213621	213617			8	
ILQELPSVSQETLK	1	Unmodified	1583.877	0.8770379	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								3	2	2	2	64.752	64.09	2;3	6.1345E-05	58276	160511_QHF_FH_JSI11i_1	117.79	91.675			0.9463	0.89623	29.124	9	5	Median	2.0564	1.7023	50.129	3	3	Plateau	0.85806	0.99552	14.858	2	1	Median	0.92132	0.91887	30.183	2	0	Median	0.83958	0.85719	18.832	2	1	Median	567760000	281260000	286500000	119620000	59350000	60269000	139030000	83932000	55097000	140280000	57769000	82511000	168840000	80210000	88625000	25185	4246	23867	157758;157759;157760;157761;157762;157763;157764;157765;157766	213622;213623;213624;213625;213626;213627;213628;213629;213630;213631;213632	213623			11	
ILQETLNELDK	1	Unmodified	1314.7031	0.70309628	1776	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.2	52.662	2	0.0054402	47590	160511_QHF_FH_JSI11i_1	63.184	30.864			0.11884	0.12062	3.1743	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.121	0.11795	NaN	1	1	Median	0.11672	0.12336	NaN	1	1	Median	470300000	422310000	47992000	0	0	0	0	0	0	259200000	235510000	23693000	211110000	186810000	24300000	25186	1776	23868	157767;157768;157769	213633;213634;213635	213633			3	
ILQEYITQEGHK	1	Unmodified	1457.7514	0.75144346	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.457	1	11	2							4	2	4	4	34.135	33.264	2;3	2.0983E-07	29049	160511_QHF_FH_JSI10i_2	126.83	107.77			0.98179	1.0417	55.396	13	10	Median	1.2107	1.0544	17.666	4	3	Median	0.98179	1.211	NaN	1	0	Median	0.80802	0.80529	45.897	4	4	Median	0.65844	0.70789	95.082	4	3	Median	1414800000	730800000	683990000	264380000	119820000	144560000	207840000	99747000	108090000	591270000	304520000	286750000	351320000	206720000	144590000	25187	4524	23869	157770;157771;157772;157773;157774;157775;157776;157777;157778;157779;157780;157781;157782;157783	213636;213637;213638;213639;213640;213641;213642;213643;213644;213645;213646;213647;213648;213649;213650	213648			15	
ILQEYVEHQVDDAMMANAAQK	1	Unmodified	2403.1199	0.1198805	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.064	70.179	3	1.926E-22	62300	160511_QHF_FH_JSI10i_2	156.92	142.3			0.9211	0.94924	9.298	4	0	Median	0.98424	0.84751	NaN	1	0	Median	0.81365	0.99104	NaN	1	0	Median	0.90149	0.90921	NaN	1	0	Median	0.94114	1.0461	NaN	1	0	Median	454470000	221530000	232940000	79745000	40039000	39706000	126840000	48792000	78050000	142480000	66413000	76063000	105410000	66286000	39126000	25188	900	23870	157784;157785;157786;157787	213651;213652;213653;213654;213655;213656;213657;213658;213659	213658			9	
ILQGGVGIPHIR	0	Unmodified	1258.751	0.75098995	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	52.034	51.189	3	3.2359E-05	42134	160511_QHF_FH_JSI9i_3	84.479	68.85			1.0293	1.0559	20.074	4	1	Median	1.5253	1.2243	NaN	1	0	Median	1.0646	1.2345	NaN	1	1	Median	0.9952	0.91067	NaN	1	0	Median	0.80595	0.83672	NaN	1	0	Median	619700000	301710000	318000000	230030000	98724000	131310000	181980000	92477000	89499000	91370000	45622000	45748000	116330000	64885000	51442000	25189	1633	23871	157788;157789;157790;157791	213660;213661;213662;213663;213664;213665;213666	213665			7	
ILQGVVVVLSGFQNPFR	0	Unmodified	1872.0622	0.062153332	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	96.403	88.142	2;3	2.1143E-20	49730	160513_QHF_FH_JSI9Kac_6	141.13	115.93			1.134	1.2134	16.773	7	1	Median	1.2576	1.0845	15.88	2	0	Median	0.944	1.1205	11.981	2	0	Median	1.3561	1.3243	8.8512	2	1	Median	0.82636	0.87099	NaN	1	0	Median	641160000	285540000	355630000	168430000	70837000	97591000	212350000	102720000	109630000	184940000	71018000	113930000	75436000	40957000	34479000	25190	1150	23872	157792;157793;157794;157795;157796;157797;157798	213667;213668;213669;213670;213671;213672;213673;213674	213671			7	
ILQHKDELNADHPFIYIIR	1	Acetyl (K)	2376.259	0.25901524	1464	P36952	SERPINB5	Serpin B5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		78.588	71.455	3;4	7.3814E-05	38493	160513_QHF_FH_JSI11Kac_6	108.37	86.153			1.0972	1.2993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0972	1.2993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224320000	119810000	104510000	0	0	0	190210000	85697000	104510000	34111000	34111000	0	0	0	0	25191	1464	23873	157799;157800;157801	213675;213676;213677	213675	1450		3	
ILQIAESYLIVSDK	1	Unmodified	1590.8869	0.88687431	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		87.94	87.383	3	0.019636	76987	160511_QHF_FH_JSI11i_2	38.028	26.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3372500	3372500	0	0	0	0	0	0	0	3372500	3372500	0	0	0	0	25192	4424	23874	157802	213678	213678			1	
ILQIITELIK	1	Unmodified	1182.7588	0.75876067	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.35	101.17	2	0.012815	87058	160511_QHF_FH_JSI12i_2	54.608	34.821			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48667000	48667000	0	0	0	0	0	0	0	0	0	0	48667000	48667000	0	25193	3267	23875	157803	213679	213679			1	
ILQKQGFK	2	Acetyl (K)	1002.5862	0.58621603	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.781							2	3	3	1	2	2	3	41.69	32.063	2	0.0058296	18923	160513_QHF_FH_JSI12Kac_4	84.244	56.137			0.94544	1.0184	9.6811	8	0	Median	0.99085	0.85805	NaN	1	0	Median	0.8302	0.97351	11.995	2	0	Median	0.96407	0.94897	9.3267	2	0	Median	0.94577	1.028	4.5676	3	0	Plateau	357890000	184570000	173320000	10619000	5193200	5425700	68508000	39711000	28797000	136090000	71804000	64287000	142680000	67864000	74811000	25194	935	23876	157804;157805;157806;157807;157808;157809;157810;157811	213680;213681;213682	213680	690		3	
ILQKYNHCR	1	Acetyl (K)	1272.6397	0.63972494	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		22.329	13.215	3	0.0017096	8647	160513_QHF_FH_JSI11Kac_6	75.378	60.502			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4414600	4414600	0	0	0	0	0	0	0	4414600	4414600	0	0	0	0	25195	2772	23877	157812	213683	213683	2678		1	
ILQLCMGNHELYMR	0	Unmodified	1776.8474	0.84735123	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1		2	3	1	69.926	67.568	2;3	5.5725E-07	36550	160513_QHF_FH_JSI10Kac_6	180.18	134.81			0.77355	0.71864	41.869	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67779	0.75911	NaN	1	0	Median	0.53404	0.50737	49.232	2	1	Median	NaN	NaN	NaN	0	0	Median	128110000	80146000	47966000	0	0	0	37272000	27182000	10091000	90840000	52965000	37875000	0	0	0	25196	1073	23878	157813;157814;157815;157816;157817;157818	213684;213685;213686;213687;213688;213689;213690	213690			7	
ILQLCMGNHELYMR	0	Oxidation (M)	1792.8423	0.84226585	1073	P15311	EZR	Ezrin	yes	yes	0	0	1	0		By matching	By matching	By MS/MS	16	0									3		1	1	1	64.5	55.212	3	0.0068303	28952	160513_QHF_FH_JSI12Kac_6	41.495	30.216			0.71929	0.85156	38.685	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71929	0.85156	NaN	1	0	Median	0.78244	0.75874	NaN	1	0	Median	1.4288	1.5592	NaN	1	0	Median	52197000	29269000	22927000	0	0	0	25100000	15779000	9320600	14457000	8351900	6105500	12640000	5138400	7501400	25197	1073	23878	157819;157820;157821	213691	213691		718	1	
ILQLLAETFHHK	1	Unmodified	1448.814	0.81398414	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	65.626	64.735	4	0.015973	54314	160511_QHF_FH_JSI10i_3	38.021	32.537			0.30074	0.31535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30074	0.31535	NaN	1	1	Median	42866000	40944000	1921900	0	0	0	20982000	20982000	0	0	0	0	21884000	19962000	1921900	25198	4878	23879	157822;157823	213692;213693	213692			2	
ILQLVATGAVR	0	Unmodified	1139.7026	0.70264277	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	65.421	56.461	2	0.0036982	30630	160513_QHF_FH_JSI11Kac_6	72.928	10.346			0.66536	0.70234	52.6	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0042	1.1889	57.321	2	2	Median	0.66039	0.62228	NaN	1	1	Median	0.51626	0.55604	NaN	1	1	Median	82092000	37842000	44251000	0	0	0	48444000	21239000	27205000	28981000	12940000	16042000	4667400	3663000	1004400	25199	1609	23880	157824;157825;157826;157827	213694;213695;213696;213697	213694			4	
ILQNYDNK	1	Unmodified	1006.5084	0.50835964	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	15.526	14.795	2	0.014795	12420	160511_QHF_FH_JSI12i_1	51.059	29.288			1.127	1.0319	4.381	2	0	Median	1.3043	1.0644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97383	1.0004	NaN	1	0	Median	309300000	138680000	170620000	136470000	59887000	76580000	0	0	0	0	0	0	172830000	78791000	94039000	25200	1685;31;191	23881	157828;157829	213698	213698			1	
ILQVSFK	1	Unmodified	833.50109	0.50108942	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.61		4	3					1	4	3	3	3	3	52.369	47.895	2	0.017903	41059	160511_QHF_FH_JSI12i_2	60.76	12.586			0.91014	0.97756	19.68	12	0	Median	0.98893	0.84785	10.911	3	0	Plateau	0.85155	1.0563	4.3506	3	0	Plateau	1.3033	1.3175	30.601	3	0	Median	0.87752	0.97222	18.339	3	0	Median	1512700000	745630000	767100000	240720000	117880000	122840000	329370000	181530000	147830000	488040000	235310000	252730000	454600000	210910000	243690000	25201	2700	23882	157830;157831;157832;157833;157834;157835;157836;157837;157838;157839;157840;157841	213699;213700;213701;213702;213703;213704	213700			6	
ILREEGPK	1	Unmodified	940.53418	0.53418046	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	8.9094	8.7459	3	0.0034721	6457	160511_QHF_FH_JSI10i_3	51.066	18.226			0.85469	0.87104	20.586	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92542	1.08	NaN	1	0	Median	0.74224	0.71559	NaN	1	0	Median	0.85469	0.87104	NaN	1	0	Median	892000000	480660000	411340000	0	0	0	312980000	171990000	140990000	469740000	248160000	221570000	109290000	60504000	48782000	25202	5345	23883	157842;157843;157844;157845	213705;213706;213707;213708	213707			4	
ILREEGPSAFWK	1	Unmodified	1431.751	0.75104953	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.724	51.724	3	0.012303	45779	160511_QHF_FH_JSI11i_3	46.387	30.037			1.2346	1.1763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2346	1.1763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41925000	17150000	24775000	0	0	0	0	0	0	41925000	17150000	24775000	0	0	0	25203	562	23884	157846	213709	213709			1	
ILSCGEVIHVK	1	Unmodified	1253.6802	0.68019277	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		40.193	39.481	3	0.001145	33799	160511_QHF_FH_JSI11i_2	63.473	49.464			0.70561	0.78085	63.034	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0072	1.2194	NaN	1	1	Median	0.49433	0.50003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	143210000	77601000	65605000	0	0	0	57480000	31521000	25959000	85726000	46080000	39646000	0	0	0	25204	4682	23885	157847;157848	213710;213711	213710			2	
ILSDDVPIR	0	Unmodified	1026.571	0.5709599	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.275	45.623	2	0.0081794	41455	160511_QHF_FH_JSI12i_1	60.59	24.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25205	1830	23886	157849	213712	213712			1	
ILSDDVPIRDYR	0	Unmodified	1460.7623	0.7623425	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	48.662	47.932	2;3	0.0024185	42244	160511_QHF_FH_JSI10i_2	47.062	41.56			0.79136	0.73217	25.965	5	1	Median	0.96394	0.81907	NaN	1	0	Median	0.81798	0.99633	NaN	1	1	Median	0.79136	0.73217	NaN	1	0	Median	0.53165	0.56574	17.609	2	0	Median	1410200000	716710000	693530000	308950000	135790000	173160000	654750000	326630000	328130000	87329000	45720000	41609000	359210000	208580000	150630000	25206	1830	23887	157850;157851;157852;157853;157854	213713;213714;213715;213716	213715			3	
ILSDVTHSAVFGVPASK	1	Unmodified	1726.9254	0.92538508	2792	Q2M2I8	AAK1	AP2-associated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	62.061	61.389	3	5.8157E-06	54403	160511_QHF_FH_JSI10i_2	92.439	70.981			1.0685	1.7468	39.582	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.102	1.3229	NaN	1	0	Median	1.6315	1.6	51.713	2	1	Median	2.1234	2.4461	NaN	1	1	Median	221790000	93789000	128000000	0	0	0	63346000	33244000	30102000	104000000	43041000	60958000	54441000	17504000	36937000	25207	2792	23888	157855;157856;157857;157858;157859;157860	213717;213718;213719;213720;213721;213722	213722			6	
ILSDYGTTFVTAWK	1	Unmodified	1600.8137	0.81370936	3589	Q8NBF6	AVL9	Late secretory pathway protein AVL9 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.115	84.522	2	0.0013515	74356	160511_QHF_FH_JSI11i_2	60.255	44.626			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25208	3589	23889	157861	213723	213723			1	
ILSENFGSIHVYFGDPVSLR	0	Unmodified	2249.1481	0.14806781	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.7	6.13			1						2	1	1	1		90.471	85.692	3	0.0043616	45555	160513_QHF_FH_JSI10Kac_6	54.728	36.67			0.52847	0.62166	55.026	3	3	Plateau	1.2555	1.0616	NaN	1	1	Median	0.52847	0.62166	NaN	1	1	Median	1.9783	1.8683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117130000	61705000	55430000	32353000	11419000	20933000	62232000	43016000	19216000	22550000	7269100	15281000	0	0	0	25209	265	23890	157862;157863;157864	213724;213725;213726	213726			3	
ILSFIQDQEEDYLK	1	Unmodified	1739.8618	0.86178177	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	83.587	82.492	2	1.697E-07	72622	160511_QHF_FH_JSI11i_2	96.015	62.149			0.71208	0.76252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71208	0.76252	NaN	1	1	Median	7786200	6769100	1017100	0	0	0	0	0	0	0	0	0	7786200	6769100	1017100	25210	3375	23891	157865;157866;157867	213727;213728;213729	213729			3	
ILSGNFFLLK	1	Unmodified	1150.675	0.67503104	4639	Q9H0R6	QRSL1	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				85.138	76.527	2	0.023306	42109	160513_QHF_FH_JSI9Kac_6	57.708	33.858			2.0508	1.7934	NaN	1	1	Median	2.0508	1.7934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36218000	11301000	24917000	36218000	11301000	24917000	0	0	0	0	0	0	0	0	0	25211	4639	23892	157868	213730	213730			1	
ILSGPFVQK	1	Unmodified	987.57532	0.57531699	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							2	3	3	2	48.397	47.522	2	0.0021594	38773	160511_QHF_FH_JSI12i_2	75.109	41.752			1.2098	1.3188	21.29	10	3	Median	1.5784	1.3071	14.042	2	1	Median	1.1259	1.3853	6.416	3	1	Plateau	1.1634	1.129	14.759	3	0	Median	1.6758	1.8101	21.98	2	1	Median	4371700000	2120300000	2251300000	349100000	165760000	183340000	469310000	255250000	214060000	2937200000	1405400000	1531700000	616090000	293910000	322180000	25212	1205	23893	157869;157870;157871;157872;157873;157874;157875;157876;157877;157878	213731;213732;213733;213734;213735;213736;213737;213738;213739;213740;213741;213742	213732			12	
ILSGVVTK	1	Unmodified	815.51165	0.5116541	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.46	1	2				1	3	4	3	3	3	4	4	33.787	25.573	2	0.0032112	6112	160513_QHF_FH_JSI9Kac_3	87.181	28.577			0.89962	0.96558	29.553	14	2	Median	1.18	0.9974	2.3308	3	0	Median	0.83578	0.96004	8.3375	3	0	Median	0.93813	0.91378	8.5771	4	0	Median	0.87995	0.96454	57.008	4	2	Median	5205000000	2415600000	2789400000	157290000	70281000	87012000	91561000	46481000	45079000	1278800000	588580000	690270000	3677300000	1710200000	1967000000	25213	1996	23894	157879;157880;157881;157882;157883;157884;157885;157886;157887;157888;157889;157890;157891;157892	213743;213744;213745;213746;213747;213748;213749;213750;213751;213752;213753;213754;213755;213756	213750			14	
ILSHFPEELSLAFVYGSGVYR	0	Unmodified	2383.2212	0.22123275	3995	Q96BW9	TAMM41	Phosphatidate cytidylyltransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.787	86.067	3	1.0686E-09	49137	160513_QHF_FH_JSI10Kac_6	90.968	73.82			0.64029	0.7618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64029	0.7618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159250000	110370000	48886000	0	0	0	159250000	110370000	48886000	0	0	0	0	0	0	25214	3995	23895	157893	213757	213757			1	
ILSHIYAK	1	Unmodified	943.5491	0.54910224	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			2						1	1	1	1		22.81	21.545	3	0.0057612	17709	160511_QHF_FH_JSI10i_3	52.255	26.15			0.46114	0.45231	18.079	2	2	Median	0.62321	0.51399	NaN	1	1	Median	0.34122	0.39803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40654000	24131000	16522000	22464000	11704000	10760000	18190000	12427000	5762300	0	0	0	0	0	0	25215	1577	23896	157894;157895;157896	213758;213759;213760	213758			3	
ILSHTEEHK	1	Unmodified	1092.5564	0.55637247	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	3	3	2	5.1543	4.9586	2;3	1.7098E-06	2629	160511_QHF_FH_JSI12i_3	130.56	97.721			1.1828	1.1081	21.871	8	0	Median	1.2278	1.0425	NaN	1	0	Median	0.68475	0.81749	4.4755	2	0	Median	1.2439	1.1597	21.369	3	0	Median	1.1828	1.1939	3.515	2	0	Median	3342100000	1632000000	1710100000	201080000	74653000	126430000	322510000	197080000	125430000	1223200000	626030000	597150000	1595400000	734280000	861090000	25216	3170	23897	157897;157898;157899;157900;157901;157902;157903;157904;157905	213761;213762;213763;213764;213765;213766;213767;213768;213769;213770;213771	213771			11	
ILSIMYYAR	0	Unmodified	1128.6002	0.60015154	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	75.821	67.354	2	0.00089108	35205	160513_QHF_FH_JSI12Kac_6	89.142	68.622			1.0388	0.98203	12.522	4	0	Median	1.0901	0.92717	NaN	1	0	Median	0.77088	0.88756	NaN	1	0	Median	1.2463	1.1733	NaN	1	0	Median	0.98994	1.0401	NaN	1	0	Median	489160000	226040000	263130000	98291000	33304000	64987000	182920000	106870000	76053000	137390000	57212000	80181000	70560000	28654000	41905000	25217	5340	23898	157906;157907;157908;157909	213772;213773;213774;213775	213774			4	
ILSISADIETIGEILK	1	Unmodified	1713.9764	0.9764176	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.24		8	4						5	4	4	5	4	100.93	98.182	2;3	1.9448E-159	90910	160511_QHF_FH_JSI10i_2	304.51	248.95			0.94952	0.94106	15.433	16	2	Median	1.1761	1.011	8.1937	3	0	Median	0.70677	1.0526	16.15	4	0	Linear	0.99774	0.97464	10.399	5	2	Median	0.83912	0.90056	12.665	4	0	Median	6637200000	3451800000	3185400000	1261100000	604300000	656800000	1155700000	693980000	461770000	3111900000	1537400000	1574500000	1108500000	616130000	492350000	25218	1975	23899	157910;157911;157912;157913;157914;157915;157916;157917;157918;157919;157920;157921;157922;157923;157924;157925;157926	213776;213777;213778;213779;213780;213781;213782;213783;213784;213785;213786;213787;213788;213789;213790;213791;213792;213793;213794;213795;213796;213797;213798;213799;213800;213801;213802	213794			27	
ILSISADIETIGEILKK	2	Unmodified	1842.0714	0.071380614	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	101.89	101.82	3	2.4897E-17	90989	160511_QHF_FH_JSI11i_3	126.19	115.72			0.86069	0.9288	24.108	2	2	Median	NaN	NaN	NaN	0	0	Median	0.9417	1.1014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78665	0.78323	NaN	1	1	Median	1002300000	665370000	336940000	0	0	0	97409000	54496000	42913000	0	0	0	904910000	610880000	294030000	25219	1975	23900	157927;157928;157929;157930;157931	213803;213804;213805;213806;213807	213803			5	
ILSKLHTVQPK	2	Acetyl (K)	1304.7816	0.78162138	1842	P55036;A2A3N6	PSMD4;PIPSL	26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein	yes	no	1	0	0	1			By MS/MS		16	0									2			2		47.144	37.469	3	0.0014276	20439	160513_QHF_FH_JSI11Kac_6	68.44	53.564			0.55753	0.54378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55753	0.54378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14526000	11042000	3483300	0	0	0	0	0	0	14526000	11042000	3483300	0	0	0	25220	1842	23901	157932;157933	213808;213809	213809	1849		2	
ILSLLAASGPTWDQVPPFQWSTSPFSGLLHMGQPDLWK	1	Unmodified	4207.1241	0.12410825	3669	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.777	94.057	4	7.9797E-69	55297	160513_QHF_FH_JSI10Kac_6	164.29	150.45			0.66063	0.78222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66063	0.78222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203840000	115780000	88058000	0	0	0	203840000	115780000	88058000	0	0	0	0	0	0	25221	3669	23902	157934	213810;213811	213810			2	
ILSLQLLLSILQNAGPIFR	0	Unmodified	2108.2721	0.27214611	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.94	98.218	2;3	1.8763E-102	58133	160513_QHF_FH_JSI10Kac_6	280.9	252.69			1.4752	1.7516	47.204	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4752	1.7516	47.204	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173930000	77790000	96144000	0	0	0	173930000	77790000	96144000	0	0	0	0	0	0	25222	5719	23903	157935;157936	213812;213813;213814	213814			3	
ILSLVGLSWMDWLK	1	Unmodified	1659.9058	0.90583561	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.517	90.362	2	0.00039417	52137	160513_QHF_FH_JSI9Kac_6	114.82	89.602			0.62516	0.53977	NaN	1	1	Median	0.62516	0.53977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48754000	29931000	18823000	48754000	29931000	18823000	0	0	0	0	0	0	0	0	0	25223	1534	23904	157937	213815	213815			1	
ILSLVHWGMYSGHGK	1	Unmodified	1683.8555	0.85553137	2359	Q13145	BAMBI	BMP and activin membrane-bound inhibitor homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			69.885	62.281	4	0.00025318	34163	160513_QHF_FH_JSI10Kac_6	86.497	74.883			0.57543	0.67742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57543	0.67742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48492000	32390000	16101000	0	0	0	48492000	32390000	16101000	0	0	0	0	0	0	25224	2359	23905	157938	213816	213816			1	
ILSMAEGIK	1	Unmodified	960.5314	0.53140327	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		45.223	44.494	2	0.047412	39190	160511_QHF_FH_JSI10i_2	44.753	19.83			2.7098	3.0403	39.812	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9022	2.2944	NaN	1	1	Median	3.8603	4.0289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133270000	46503000	86770000	0	0	0	55969000	23743000	32227000	77304000	22760000	54544000	0	0	0	25225	5113	23906	157939;157940	213817;213818	213818			2	
ILSNNPSK	1	Unmodified	871.47633	0.47633123	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	1	2	1	9.7967	7.9802	2	0.015178	6833	160511_QHF_FH_JSI12i_1	50.703	0.5768			0.90038	0.88124	12.945	5	0	Median	0.94417	0.77263	NaN	1	0	Median	0.90124	1.0705	NaN	1	0	Median	0.85851	0.83801	7.1125	2	0	Median	0.85954	0.91903	NaN	1	0	Median	1365000000	792880000	572160000	222040000	102400000	119640000	414940000	248150000	166780000	370110000	234410000	135700000	357950000	207910000	150040000	25226	1629	23907	157941;157942;157943;157944;157945;157946	213819;213820;213821	213819			3	
ILSQQPVETEEVNK	1	Unmodified	1612.8308	0.83081599	2355	Q13129	RLF	Zinc finger protein Rlf	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	35.888	35.162	2	0.0012035	31447	160511_QHF_FH_JSI10i_1	78.653	51.538			0.46678	0.44397	54.002	2	2	Median	0.37494	0.30305	NaN	1	1	Median	0.58113	0.65042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42860000	32901000	9959600	18808000	15431000	3376900	20268000	13685000	6582700	0	0	0	3785400	3785400	0	25227	2355	23908	157947;157948;157949	213822;213823;213824	213823			3	
ILSQSTDSLNMR	0	Unmodified	1363.6766	0.67656396	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	39.565	38.833	2	6.1376E-05	33055	160511_QHF_FH_JSI12i_2	96.89	69.775			1.1915	1.2005	24.429	7	3	Median	1.1915	1.0774	NaN	1	1	Median	0.95211	1.1408	10.794	2	1	Median	1.2153	1.2218	2.483	2	1	Median	1.3563	1.4454	51.461	2	0	Median	470390000	218550000	251840000	47229000	22306000	24922000	129140000	57698000	71442000	176710000	86143000	90569000	117310000	52399000	64909000	25228	3915	23909	157950;157951;157952;157953;157954;157955;157956	213825;213826;213827;213828;213829;213830;213831	213827			7	
ILSTIDRELLK	1	Unmodified	1299.7762	0.77620165	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	2	4	2	56.229	55.546	3	0.0012608	48991	160511_QHF_FH_JSI9i_2	67.08	42.225			0.15395	0.18235	196.8	11	11	Median	2.3024	1.8502	222.02	3	3	Median	0.13651	0.16561	13.617	2	2	Median	0.81531	0.83804	229.18	4	4	Median	0.82926	0.83539	273.02	2	2	Median	1105800000	598920000	506930000	154350000	77918000	76433000	158850000	130990000	27857000	549670000	255400000	294270000	242980000	134610000	108370000	25229	1567	23910	157957;157958;157959;157960;157961;157962;157963;157964;157965;157966;157967	213832;213833;213834;213835;213836;213837;213838;213839;213840;213841;213842	213837			11	
ILSVDGNK	1	Unmodified	844.46543	0.46543219	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.265	19.145	2	0.054003	16454	160511_QHF_FH_JSI11i_1	36.395	2.6568			0.89314	0.84432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89314	0.84432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65057000	37459000	27599000	0	0	0	0	0	0	65057000	37459000	27599000	0	0	0	25230	116	23911	157968	213843	213843			1	
ILSVELPK	1	Unmodified	897.55352	0.55351892	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	58.537	57.606	2	0.054003	50962	160511_QHF_FH_JSI10i_2	36.395	19.01			0.927	0.96019	9.5444	4	0	Median	1.2629	1.1123	NaN	1	0	Median	0.72312	0.88847	NaN	1	0	Median	0.96227	0.94016	NaN	1	0	Median	0.89303	0.98064	NaN	1	0	Median	146910000	65931000	80984000	33108000	14749000	18359000	31352000	15681000	15671000	48999000	21533000	27466000	33456000	13968000	19488000	25231	4388	23912	157969;157970;157971;157972	213844	213844			1	
ILTATVDNANILLQIDNAR	0	Unmodified	2067.1324	0.13241774	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	94.308	93.932	2;3	2.7921E-25	81059	160511_QHF_FH_JSI12i_2	182.57	154.24		+	1.0831	1.1814	33.594	9	4	Median	0.90428	0.76591	26.404	3	2	Median	1.1191	1.406	19.501	2	2	Median	1.2345	1.2332	16.167	2	0	Median	1.114	1.2138	3.8253	2	0	Median	125590000	59509000	66077000	33239000	18336000	14903000	22666000	11523000	11143000	36365000	14842000	21523000	33316000	14808000	18508000	25232	65	23914	157973;157974;157975;157976;157977;157978;157979;157980;157981	213845;213846;213847;213848;213849;213850;213851;213852;213853;213854;213855;213856	213848			12	
ILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNK	1	Unmodified	4014.1731	0.17310735	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			101.84	95.255	4;5	7.0177E-143	56753	160513_QHF_FH_JSI10Kac_6	235.56	229.53			0.89844	1.044	51.707	4	1	Median	1.238	1.0564	NaN	1	0	Median	0.86434	1.0317	60.016	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2148100000	1198200000	949970000	155800000	75290000	80512000	1992300000	1122900000	869460000	0	0	0	0	0	0	25233	843	23915	157982;157983;157984;157985	213857;213858;213859;213860;213861;213862	213861			6	
ILTDEAVSGWK	1	Unmodified	1217.6292	0.62920306	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	53.565	52.901	2	9.6068E-05	47818	160511_QHF_FH_JSI11i_1	93.667	62.363			0.70434	0.80458	16.752	3	1	Plateau	1.3004	1.102	NaN	1	0	Median	0.70434	0.80458	NaN	1	0	Median	0.87951	0.85219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	253470000	128680000	124790000	36709000	12374000	24335000	118620000	72115000	46510000	98137000	44195000	53943000	0	0	0	25234	3921	23916	157986;157987;157988;157989;157990	213863;213864;213865;213866;213867	213864			5	
ILTDIMWPIIAK	1	Unmodified	1412.8101	0.81014431	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.65	101.54	2	1.1758E-07	89393	160511_QHF_FH_JSI9i_2	136.33	108.84			0.96085	1.0974	9.1914	4	0	Median	1.2483	1.0879	NaN	1	0	Median	0.93769	1.1662	NaN	1	0	Median	0.93075	0.94095	NaN	1	0	Median	0.98459	1.1069	NaN	1	0	Median	1514000000	750840000	763140000	277330000	115720000	161610000	398120000	194680000	203440000	377800000	203390000	174410000	460730000	237050000	223680000	25235	2346	23917	157991;157992;157993;157994	213868;213869;213870;213871;213872	213869			5	
ILTDSIQR	0	Unmodified	944.5291	0.52909508	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	26.887	26.133	2	0.013349	21924	160511_QHF_FH_JSI11i_2	52.403	8.5883			1.051	1.1214	10.78	5	0	Median	1.3298	1.1214	NaN	1	0	Median	1.051	1.2699	NaN	1	0	Median	1.1751	1.1414	12.286	2	0	Median	0.89342	0.98998	NaN	1	0	Median	498230000	245260000	252970000	92625000	38163000	54462000	92989000	51467000	41522000	208910000	90435000	118480000	103700000	65190000	38512000	25236	3248	23918	157995;157996;157997;157998;157999	213873	213873			1	
ILTDYGFEGHPFR	0	Unmodified	1550.7518	0.75177781	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			4								1	2	1	59.919	59.471	2;3	0.00017385	52722	160511_QHF_FH_JSI11i_3	82.379	71.431			1.0453	1.0438	13.538	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92001	1.0651	NaN	1	0	Median	1.0453	0.96452	8.3083	2	0	Median	1.2424	1.2614	NaN	1	0	Median	477130000	193940000	283190000	0	0	0	42260000	20186000	22075000	245850000	103430000	142430000	189020000	70326000	118690000	25237	534	23919	158000;158001;158002;158003	213874;213875;213876	213874			2	
ILTDYGFEGHPFRK	1	Unmodified	1678.8467	0.84674083	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	3	2	1	51.577	50.561	3;4	3.3127E-05	44162	160511_QHF_FH_JSI11i_3	96.464	82.032			0.96854	1.0445	25.516	8	2	Median	1.3816	1.1017	26.944	3	0	Median	0.88595	1.0445	0.73491	2	1	Median	0.80535	0.75732	40.885	2	1	Median	1.0207	1.079	NaN	1	0	Median	953700000	437000000	516700000	361880000	147890000	213990000	209320000	116390000	92926000	324120000	142640000	181480000	58386000	30080000	28306000	25238	534	23920	158004;158005;158006;158007;158008;158009;158010;158011;158012	213877;213878;213879;213880;213881;213882;213883;213884;213885;213886;213887	213877			9	
ILTEAEIDAHLVALAERD	0	Unmodified	1978.0371	0.037120373	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.4	0.49		3	2							1	1		3	89.033	88.342	2;3	6.3231E-06	76238	160511_QHF_FH_JSI12i_3	127.76	104.88			1.2937	1.5008	50.094	5	5	Median	3.2149	2.8267	NaN	1	1	Median	1.2937	1.5008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0676	3.3498	62.387	3	3	Plateau	78641000	27445000	51197000	16970000	4325100	12645000	12536000	7027200	5508700	0	0	0	49135000	16092000	33043000	25239	1922	23921	158013;158014;158015;158016;158017	213888;213889;213890;213891;213892	213892			5	
ILTFDQLALDSPK	1	Unmodified	1459.7922	0.79224564	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.8	8	8	5				2	6		7	7	8	7	83.785	80.353	2;3	9.1112E-53	75536	160511_QHF_FH_JSI10i_1	215.46	168.27			0.9555	0.98599	9.3327	28	0	Median	1.1852	0.97803	4.4016	7	0	Median	0.88872	1.0267	8.8803	7	0	Median	0.99358	1.047	11.865	7	0	Linear	0.94979	1.0098	7.7679	7	0	Median	14980000000	7511600000	7468800000	3099000000	1483500000	1615500000	3965200000	2140500000	1824700000	4560600000	2120100000	2440500000	3355500000	1767500000	1588000000	25240	2250	23922	158018;158019;158020;158021;158022;158023;158024;158025;158026;158027;158028;158029;158030;158031;158032;158033;158034;158035;158036;158037;158038;158039;158040;158041;158042;158043;158044;158045;158046	213893;213894;213895;213896;213897;213898;213899;213900;213901;213902;213903;213904;213905;213906;213907;213908;213909;213910;213911;213912;213913;213914;213915;213916;213917;213918;213919;213920;213921;213922;213923;213924;213925;213926;213927;213928;213929;213930;213931;213932;213933;213934;213935;213936;213937;213938;213939;213940;213941;213942;213943;213944;213945;213946;213947;213948;213949;213950;213951;213952;213953;213954;213955;213956;213957;213958;213959	213923			67	
ILTFLETYLASGHQK	1	Unmodified	1719.9196	0.91957142	5003	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	87.559	86.956	3	0.00049432	77399	160511_QHF_FH_JSI11i_3	70.529	66.18			7.3888	7.9359	35.569	4	4	Median	14.329	11.827	NaN	1	1	Median	8.1815	9.6135	NaN	1	1	Median	5.7204	5.4095	NaN	1	1	Median	6.673	6.551	NaN	1	1	Median	154910000	29301000	125610000	32700000	3593300	29107000	19380000	2382200	16998000	57282000	10146000	47136000	45544000	13179000	32365000	25241	5003	23923	158047;158048;158049;158050	213960;213961;213962;213963	213960			4	
ILTGGADK	1	Unmodified	773.42832	0.42831841	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			2	3	3	2	10.672	9.5344	2	0.0033437	7639	160511_QHF_FH_JSI11i_1	73.26	15.979			1.0159	1.0094	17.734	10	0	Median	1.2206	1.0094	2.9938	2	0	Median	1.0989	1.2886	28.906	3	0	Plateau	1.3365	1.332	16.855	3	0	Plateau	0.84023	0.90605	2.2049	2	0	Median	5531800000	2992400000	2539400000	1160500000	538900000	621640000	1513800000	871240000	642540000	1690200000	859110000	831100000	1167200000	723100000	444140000	25242	5426	23924	158051;158052;158053;158054;158055;158056;158057;158058;158059;158060	213964;213965;213966;213967;213968;213969;213970;213971;213972;213973;213974	213965			11	
ILTGTDAPK	1	Unmodified	914.5073	0.50729701	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	18.672	18.306	2	0.0078493	15842	160511_QHF_FH_JSI12i_1	53.775	24.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25243	1737	23925	158061;158062	213975;213976	213975			2	
ILTHVAEMQGK	1	Unmodified	1225.6489	0.64889264	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	24.848	24.835	2	0.0005245	21127	160511_QHF_FH_JSI11i_3	77.662	57.876			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25244	5290	23926	158063;158064	213977;213978	213977			2	
ILTIEIKK	2	Unmodified	956.62702	0.62701821	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	43.481	42.308	2;3	0.0030772	35487	160511_QHF_FH_JSI10i_3	55.549	24.476			0.53588	0.61032	2.8911	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48261	0.59797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59503	0.62292	NaN	1	1	Median	26431000	18748000	7683300	0	0	0	19246000	12773000	6473200	0	0	0	7185300	5975200	1210100	25245	5269	23927	158065;158066;158067;158068	213979;213980;213981;213982	213981			4	
ILTIEVKK	2	Unmodified	942.61137	0.61136815	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6								3	2	3	35.219	34.593	3	0.0024391	29631	160511_QHF_FH_JSI12i_2	57.96	26.025			0.50034	0.5092	31.395	4	4	Median	NaN	NaN	NaN	0	0	Median	0.50432	0.58334	42.713	2	2	Median	0.42172	0.39993	NaN	1	1	Median	0.59362	0.60121	NaN	1	1	Median	249820000	146920000	102900000	0	0	0	52576000	32151000	20426000	56824000	37513000	19311000	140420000	77260000	63163000	25246	1262	23928	158069;158070;158071;158072;158073;158074;158075;158076	213983;213984;213985;213986;213987;213988;213989;213990	213985			8	
ILTLGEVPK	1	Unmodified	968.59063	0.59063271	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1.8	0.4	1	4								1	1	2	1	54.954	54.107	2	0.019836	46501	160511_QHF_FH_JSI12i_2	48.283	21.681			0.91674	0.95837	16.89	5	0	Median	0.91674	0.79525	NaN	1	0	Median	0.78499	0.95837	NaN	1	0	Median	1.0846	1.0591	23.97	2	0	Median	0.91693	1.0098	NaN	1	0	Median	261410000	130120000	131290000	41754000	19991000	21763000	38085000	20718000	17367000	118280000	56368000	61914000	63289000	33048000	30242000	25247	5327	23929	158077;158078;158079;158080;158081	213991;213992	213991			2	
ILTLSQIGR	0	Unmodified	999.60768	0.60767976	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			55.302	53.743	2	0.00079493	44935	160511_QHF_FH_JSI10i_3	83.265	27.254			1.0206	0.99044	3.6984	2	0	Median	1.2655	1.0167	NaN	1	0	Median	0.82316	0.96487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	441200000	230360000	210850000	224540000	112610000	111920000	216660000	117740000	98924000	0	0	0	0	0	0	25248	2730	23930	158082;158083	213993;213994;213995;213996	213994			4	
ILTLTYVDK	1	Unmodified	1064.6118	0.61176208	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.41		5					1	4		1	3	2	4	63.664	57.8	2	0.00016949	51054	160511_QHF_FH_JSI10i_2	87.639	63.684			0.85895	0.92237	35.431	10	2	Median	1.0215	0.89259	NaN	1	0	Median	0.8156	1.0115	15.067	3	0	Plateau	0.98362	0.99094	11.934	2	0	Median	1.0478	1.1681	56.241	4	2	Median	785020000	387790000	397220000	98607000	37201000	61407000	141670000	81554000	60112000	188510000	85923000	102580000	356230000	183110000	173120000	25249	899	23931	158084;158085;158086;158087;158088;158089;158090;158091;158092;158093	213997;213998;213999;214000;214001;214002;214003;214004;214005;214006	214006			10	
ILTMDGLIEDIK	1	Unmodified	1359.732	0.73195357	2112	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	94.277	94.072	2	6.2035E-05	81146	160511_QHF_FH_JSI12i_2	86.344	57.618			0.60659	0.60683	19.739	3	2	Plateau	1.0132	0.87821	NaN	1	1	Median	0.73157	0.82316	NaN	1	0	Median	0.60659	0.60683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97791000	59022000	38769000	34023000	17803000	16220000	18139000	9318200	8821100	45629000	31901000	13728000	0	0	0	25250	2112	23932	158094;158095;158096;158097	214007;214008;214009;214010;214011	214007			5	
ILTNFTGVMPPQFK	1	Unmodified	1591.8432	0.84323535	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	87.476	86.771	2;3	0.0088487	76448	160511_QHF_FH_JSI11i_2	41.621	30.181			0.53848	0.60964	44.214	3	3	Median	NaN	NaN	NaN	0	0	Median	0.53848	0.63776	NaN	1	1	Median	0.64281	0.60964	NaN	1	1	Median	0.27187	0.29021	NaN	1	1	Median	30048000	19087000	10960000	0	0	0	6708800	4180800	2528000	15640000	9387600	6252600	7699000	5519100	2179900	25251	21	23933	158098;158099;158100;158101	214012;214013;214014;214015	214014			4	
ILTNWGHPEYTCIYR	0	Unmodified	1921.9145	0.91450282	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		74.939	74.306	3	0.059535	65094	160511_QHF_FH_JSI11i_2	17.252	14.017			0.91624	0.93277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91624	0.93277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126380000	75557000	50827000	0	0	0	0	0	0	126380000	75557000	50827000	0	0	0	25252	5290	23934	158102	214016	214016			1	
ILTPALK	1	Unmodified	754.49528	0.49527576	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		13.936	13.331	2	0.049359	10660	160511_QHF_FH_JSI11i_3	43	43			0.99335	1.0276	15.555	4	0	Median	1.5311	1.2365	NaN	1	0	Median	0.79211	0.93241	13.95	2	0	Median	1.0921	1.0262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1714100000	831550000	882580000	190090000	78775000	111310000	524590000	279320000	245270000	999440000	473450000	525990000	0	0	0	25253	1896	23935	158103;158104;158105;158106	214017;214018	214017			2	
ILTPIIFK	1	Unmodified	943.61064	0.61063987	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.252	76.479	2	0.0011574	67993	160511_QHF_FH_JSI11i_3	93.262	34.057			1.1156	1.1434	10.125	4	0	Median	1.3572	1.1307	NaN	1	0	Median	1.0093	1.2216	NaN	1	0	Median	1.0536	0.9649	NaN	1	0	Median	1.1813	1.1562	NaN	1	0	Median	436430000	202360000	234070000	72640000	28276000	44364000	85047000	36509000	48538000	151350000	75214000	76132000	127390000	62358000	65033000	25254	2104	23936	158107;158108;158109;158110	214019;214020;214021;214022;214023;214024;214025;214026	214019			8	
ILTPLVSLDTPGK	1	Unmodified	1352.7915	0.79151736	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.76	3	9	4					3		5	5	5	4	79.351	77.105	2;3	9.1984E-11	68596	160511_QHF_FH_JSI11i_2	152.62	82.667			1.0473	0.99451	20.469	19	2	Median	1.1663	0.96176	30.88	5	2	Median	0.79875	0.93701	15.546	5	0	Median	1.0511	1.0301	8.377	5	0	Median	0.99776	1.0189	21.267	4	0	Median	1287700000	636360000	651340000	226610000	111890000	114710000	308830000	158670000	150160000	439200000	225710000	213490000	313070000	140090000	172980000	25255	4850	23937	158111;158112;158113;158114;158115;158116;158117;158118;158119;158120;158121;158122;158123;158124;158125;158126;158127;158128;158129	214027;214028;214029;214030;214031;214032;214033;214034;214035;214036;214037;214038;214039;214040;214041;214042;214043;214044;214045;214046;214047;214048;214049;214050;214051;214052;214053;214054	214044			28	
ILTPWLFK	1	Unmodified	1016.6059	0.60588884	3047	Q6GYQ0	RALGAPA1	Ral GTPase-activating protein subunit alpha-1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			90.404	89.322	2	0.018844	74514	160511_QHF_FH_JSI10i_3	57.559	20.539			0.92333	1.0704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92333	1.0704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12650000	7309400	5340500	0	0	0	12650000	7309400	5340500	0	0	0	0	0	0	25256	3047	23938	158130	214055	214055			1	
ILTSVDQYLELIGNSLPGTTAK	1	Unmodified	2332.2526	0.25259246	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	102.04	101.94	3	1.7455E-29	89714	160511_QHF_FH_JSI11i_2	180.04	164.06			1.0324	1.1026	16.784	4	3	Median	1.6693	1.436	NaN	1	1	Median	0.83814	0.97106	NaN	1	1	Median	1.1334	1.1481	NaN	1	0	Median	0.9404	1.0589	NaN	1	1	Median	1043300000	469790000	573530000	262030000	89103000	172930000	115590000	47219000	68371000	328330000	129980000	198350000	337370000	203490000	133880000	25257	4260	23939	158131;158132;158133;158134	214056;214057;214058;214059	214059			4	
ILTTASSHEFEHTK	1	Unmodified	1599.7893	0.78928553	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.64		11	13						7	9	5	9	8	24.658	22.145	2;3;4	6.0945E-11	18030	160511_QHF_FH_JSI12i_3	152.99	119.31			0.86771	0.88551	43.521	30	13	Median	0.97703	0.82268	42.919	8	5	Median	0.70619	0.86693	38.626	5	1	Median	0.90369	0.90448	49.381	9	3	Median	0.81902	0.84755	45.448	8	4	Median	3727100000	1783200000	1943900000	464360000	204200000	260170000	358570000	192030000	166550000	1214500000	618300000	596200000	1689700000	768680000	921030000	25258	2772	23940	158135;158136;158137;158138;158139;158140;158141;158142;158143;158144;158145;158146;158147;158148;158149;158150;158151;158152;158153;158154;158155;158156;158157;158158;158159;158160;158161;158162;158163;158164;158165	214060;214061;214062;214063;214064;214065;214066;214067;214068;214069;214070;214071;214072;214073;214074;214075;214076;214077;214078;214079;214080;214081;214082;214083;214084;214085;214086;214087;214088;214089;214090;214091;214092;214093;214094;214095;214096;214097;214098;214099;214100	214095			40	
ILTTEGR	0	Unmodified	788.43922	0.43921744	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	11.207	10.83	2	0.006833	8594	160511_QHF_FH_JSI9i_2	89.673	43.01			0.99178	1.1097	33.316	5	0	Median	0.84987	0.71194	NaN	1	0	Median	0.70022	0.85326	NaN	1	0	Median	1.0869	1.1106	NaN	1	0	Median	1.3029	1.3817	31.004	2	0	Median	3570500000	1751700000	1818800000	722340000	354630000	367710000	706630000	386280000	320360000	1344300000	612130000	732180000	797200000	398630000	398580000	25259	2265	23941	158166;158167;158168;158169;158170	214101;214102;214103;214104	214102			4	
ILTTEIGLHDLRK	1	Unmodified	1507.8722	0.8722273	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.626	50.779	4	2.727E-05	43319	160511_QHF_FH_JSI12i_3	86.467	83.271			0.95843	0.95827	19.959	4	0	Median	1.2604	1.0377	NaN	1	0	Median	0.96614	1.1331	NaN	1	0	Median	0.95078	0.88488	NaN	1	0	Median	0.69959	0.7193	NaN	1	0	Median	260100000	126090000	134010000	40435000	16105000	24330000	53877000	26209000	27668000	100590000	47347000	53247000	65193000	36432000	28761000	25260	292	23942	158171;158172;158173;158174	214105;214106	214106			2	
ILTTNTWSSELSK	1	Unmodified	1478.7617	0.76167379	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.75	2	4	4					1		1	4	4	2	60.767	59.072	2	1.5529E-30	51214	160511_QHF_FH_JSI11i_2	186.87	107.4			1.1577	1.1751	26.724	11	6	Median	1.318	1.1192	NaN	1	0	Median	1.1591	1.3443	24.313	4	3	Median	1.0847	1.0819	36.969	4	2	Median	1.0619	1.1564	25.196	2	1	Median	1179100000	585250000	593840000	159850000	74034000	85817000	324930000	167380000	157540000	367880000	181680000	186210000	326430000	162160000	164280000	25261	440	23943	158175;158176;158177;158178;158179;158180;158181;158182;158183;158184;158185	214107;214108;214109;214110;214111;214112;214113;214114;214115;214116;214117;214118;214119;214120;214121;214122	214117			16	
ILTTSEDSNAQEIK	1	Unmodified	1547.7679	0.76788138	4755	Q9H6V9	C2orf43	UPF0554 protein C2orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.741	30.141	2	0.00032922	26752	160511_QHF_FH_JSI10i_1	79.82	56.467			0.42885	0.42217	62.959	4	2	Median	0.58686	0.47761	NaN	1	1	Median	0.31338	0.37316	NaN	1	0	Median	0.27454	0.25924	NaN	1	0	Median	1.1107	1.1387	NaN	1	1	Median	209640000	142720000	66928000	34991000	22187000	12804000	75901000	59333000	16568000	64853000	46017000	18836000	33900000	15179000	18721000	25262	4755	23944	158186;158187;158188;158189	214123;214124;214125;214126;214127;214128	214126			6	
ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR	0	Unmodified	3751.9057	0.90571885	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8								3	3	4	99.741	99.684	3;4;5	7.0436E-55	85943	160511_QHF_FH_JSI12i_3	161.62	155.36			0.89648	0.87968	20.724	9	6	Median	NaN	NaN	NaN	0	0	Median	0.72107	0.87968	19.954	3	3	Plateau	0.79587	0.77525	13.181	2	1	Median	0.91316	0.89466	19.67	4	2	Median	796340000	479320000	317020000	0	0	0	228440000	172010000	56436000	77194000	44269000	32925000	490710000	263050000	227660000	25263	1322	23945	158190;158191;158192;158193;158194;158195;158196;158197;158198;158199	214129;214130;214131;214132;214133;214134;214135;214136;214137;214138;214139;214140;214141;214142;214143;214144;214145	214142			17	
ILVAEGTR	0	Unmodified	857.49707	0.49706667	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.875	20.917	2	0.057531	17770	160511_QHF_FH_JSI9i_2	35.618	12.689			1.3038	1.1059	NaN	1	0	Median	1.3038	1.1059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213090000	101450000	111640000	213090000	101450000	111640000	0	0	0	0	0	0	0	0	0	25264	970	23946	158200	214146	214146			1	
ILVAGDSMDSVK	1	Unmodified	1233.6275	0.6274885	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.966	46.286	2	8.9981E-05	42178	160511_QHF_FH_JSI12i_1	91.658	60.585			0.86098	0.90652	13.972	4	0	Linear	1.0463	0.8462	NaN	1	0	Median	0.98543	1.1522	NaN	1	0	Median	0.89139	0.86872	NaN	1	0	Median	0.88252	0.94596	NaN	1	0	Median	1018700000	507330000	511380000	231220000	100590000	130620000	248580000	114830000	133740000	259940000	161160000	98784000	278970000	130740000	148230000	25265	726	23947	158201;158202;158203;158204	214147;214148	214147			2	
ILVAGDSMDSVK	1	Oxidation (M)	1249.6224	0.62240312	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	1	0	By MS/MS				13	0						1				1				18.574	0.76192	2	0.031198	6149	160513_QHF_FH_JSI9Kac_3	53.327	34.547			0.67064	0.37281	NaN	1	1	Median	0.67064	0.37281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5737400	3554000	2183400	5737400	3554000	2183400	0	0	0	0	0	0	0	0	0	25266	726	23947	158205	214149	214149			1	
ILVAHDIHTK	1	Unmodified	1145.6557	0.65569258	3994	Q96BW5	PTER	Phosphotriesterase-related protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.008	19.034	4	0.028293	15434	160511_QHF_FH_JSI12i_3	32.254	21.424			0.7355	0.73573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7355	0.73573	NaN	1	0	Median	54393000	27839000	26554000	0	0	0	0	0	0	0	0	0	54393000	27839000	26554000	25267	3994	23948	158206	214150	214150			0	
ILVALCGGN	0	Unmodified	915.48479	0.48478743	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	5.25	3				4	3					3	4	3	66.037	59.281	2	1.7327E-07	30220	160513_QHF_FH_JSI11Kac_3	142.63	135.72			0.99375	1.0262	22.068	10	0	Median	NaN	NaN	NaN	0	0	Median	0.99526	1.1796	21.733	3	0	Median	0.67532	0.64685	33.197	4	0	Linear	0.99224	1.0468	4.0621	3	0	Median	241090000	132260000	108820000	0	0	0	78309000	46816000	31493000	80595000	45306000	35289000	82182000	40140000	42043000	25268	805	23949	158207;158208;158209;158210;158211;158212;158213;158214;158215;158216	214151;214152;214153;214154;214155;214156;214157;214158;214159;214160;214161;214162;214163;214164;214165	214158			15	
ILVAQGGLGGK	1	Unmodified	1011.6077	0.60767976	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	38.412	37.458	2	0.01913	31897	160511_QHF_FH_JSI12i_2	42.075	19.055			0.83146	0.92731	9.2085	4	0	Median	1.0961	0.96917	NaN	1	0	Median	0.71519	0.88725	NaN	1	0	Median	0.80998	0.80016	NaN	1	0	Median	0.8535	0.97265	NaN	1	0	Median	139720000	72165000	67550000	32705000	16095000	16610000	27618000	16864000	10754000	44283000	22905000	21378000	35109000	16301000	18809000	25269	17	23950	158217;158218;158219;158220	214166	214166			1	
ILVATNLFGR	0	Unmodified	1102.6499	0.64987892	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	76.189	71.836	2	8.7327E-26	38867	160513_QHF_FH_JSI10Kac_6	188.76	139.4			0.94311	0.98887	11.291	14	4	Median	1.2198	0.99769	11.999	4	1	Median	0.80554	0.9497	9.3975	4	1	Median	0.92158	0.86172	17.057	3	1	Plateau	0.84386	0.8579	12.176	3	1	Plateau	9569400000	4532000000	5037400000	2024000000	897580000	1126500000	3510000000	1718300000	1791600000	2290200000	1060800000	1229400000	1745200000	855310000	889870000	25270	2474;97	23951	158221;158222;158223;158224;158225;158226;158227;158228;158229;158230;158231;158232;158233;158234	214167;214168;214169;214170;214171;214172;214173;214174;214175;214176;214177;214178;214179;214180;214181;214182;214183;214184;214185;214186;214187	214187			21	
ILVAVVK	1	Unmodified	740.51601	0.5160112	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.74	1	2					2	4	4	2	4	4	3	51.612	43.613	2	0.0098726	23355	160513_QHF_FH_JSI9Kac_5	84.025	57.916			0.92168	0.99929	26.017	13	1	Median	1.7734	1.4888	46.808	2	0	Median	0.86792	1.0439	12.893	4	0	Median	0.96039	0.92281	6.2568	4	0	Median	0.58935	0.67015	20.077	3	1	Plateau	1442700000	732360000	710290000	200710000	83606000	117110000	495090000	283010000	212080000	359090000	174300000	184790000	387760000	191450000	196310000	25271	110	23952	158235;158236;158237;158238;158239;158240;158241;158242;158243;158244;158245;158246;158247	214188;214189;214190;214191;214192;214193;214194;214195;214196;214197;214198;214199;214200;214201;214202;214203	214190			16	
ILVDLLTLAHLHVSR	0	Unmodified	1699.0145	0.014474858	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	12.8	5.63			1						3	1	1	1	1	89.182	83.274	4	2.635E-11	43192	160513_QHF_FH_JSI9Kac_6	121.31	109.4			0.98405	0.92034	11.661	4	0	Median	1.0839	0.91647	NaN	1	0	Median	0.71303	0.84504	NaN	1	0	Median	1.1088	1.1133	NaN	1	0	Median	0.89341	0.92423	NaN	1	0	Median	192540000	105860000	86673000	60307000	32628000	27679000	78368000	47900000	30468000	36615000	18260000	18355000	17248000	7077700	10170000	25272	486	23953	158248;158249;158250;158251	214204;214205;214206;214207	214204			4	
ILVDYDEK	1	Unmodified	993.50188	0.50187728	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	2	1	2	37.788	36.752	2	0.00050512	32317	160511_QHF_FH_JSI10i_2	106.04	47.061			0.99248	1.0228	7.9943	5	1	Median	1.2739	1.0517	3.931	2	1	Median	0.99248	1.1909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90122	0.98878	3.1065	2	0	Median	2766000000	1376900000	1389000000	1259300000	589520000	669790000	149370000	83156000	66214000	0	0	0	1357300000	704270000	653010000	25273	1395	23954	158252;158253;158254;158255;158256;158257;158258;158259	214208;214209;214210;214211;214212;214213;214214;214215;214216;214217;214218;214219	214219			12	
ILVEDELSSPVVVFR	0	Unmodified	1700.9349	0.93488713	3111	Q6P996;Q6P474	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	3	9								1	3	5	3	93.82	93.394	2;3	1.1391E-09	80558	160511_QHF_FH_JSI12i_2	144.65	102.65			0.9725	1.0625	18.73	10	6	Median	1.5773	1.3779	NaN	1	1	Median	0.93752	1.1577	NaN	1	1	Median	1.1094	1.059	12.555	5	3	Median	0.96325	1.0661	24.306	3	1	Plateau	269470000	133450000	136020000	33534000	12346000	21187000	29183000	14574000	14610000	137850000	68887000	68964000	68898000	37643000	31254000	25274	3111	23955	158260;158261;158262;158263;158264;158265;158266;158267;158268;158269;158270;158271	214220;214221;214222;214223;214224;214225;214226;214227;214228;214229;214230;214231;214232	214222			13	
ILVELATFLEK	1	Unmodified	1274.7486	0.74858991	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.31	101.2	2	2.6767E-05	87051	160511_QHF_FH_JSI12i_2	99.53	78.66			0.84124	0.93042	39.793	4	0	Median	0.66372	0.57044	NaN	1	0	Median	1.0194	1.2316	NaN	1	0	Median	0.69423	0.70287	NaN	1	0	Median	1.1287	1.2511	NaN	1	0	Median	354830000	191500000	163340000	55835000	31613000	24222000	57251000	36221000	21030000	141760000	82601000	59162000	99984000	41063000	58921000	25275	5161	23956	158272;158273;158274;158275	214233;214234;214235	214233			1	
ILVGHALHNDLK	1	Unmodified	1328.7565	0.75646926	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				33.859	32.428	4	0.015682	26397	160511_QHF_FH_JSI9i_3	38.3	27.656			1.6355	1.3466	NaN	1	1	Median	1.6355	1.3466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40439000	19447000	20992000	40439000	19447000	20992000	0	0	0	0	0	0	0	0	0	25276	4602	23957	158276	214236	214236			1	
ILVGSLEK	1	Unmodified	857.52222	0.52221879	1724	P51003;Q9NRJ5	PAPOLA;PAPOLB	Poly(A) polymerase alpha;Poly(A) polymerase beta	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	41.296	40.362	2	0.022018	34556	160511_QHF_FH_JSI12i_2	44.349	5.3867			1.0213	1.0057	5.8432	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7495	0.92435	NaN	1	0	Median	1.0213	1.0057	NaN	1	0	Median	0.92042	1.0341	NaN	1	0	Median	177540000	91447000	86092000	0	0	0	46883000	29380000	17504000	81061000	37274000	43787000	49595000	24794000	24801000	25277	1724	23958	158277;158278;158279	214237	214237			1	
ILVGTNLVR	0	Unmodified	983.61277	0.61276513	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	53.021	52.163	2	0.00012408	44649	160511_QHF_FH_JSI12i_3	91.626	20.714			0.85241	0.91787	5.5503	6	0	Median	1.1799	1.0074	NaN	1	0	Median	0.79868	0.95106	0.5123	2	0	Median	0.96449	0.88905	NaN	1	0	Median	0.82558	0.88001	0.39277	2	0	Median	3250800000	1725400000	1525500000	301960000	149020000	152950000	949000000	537310000	411690000	754990000	370950000	384040000	1244900000	668100000	576780000	25278	4212	23959	158280;158281;158282;158283;158284;158285	214238;214239;214240;214241;214242;214243;214244	214244			7	
ILVIGLKPSLK	2	Unmodified	1179.7955	0.79548053	3520	Q8N3P4	VPS8	Vacuolar protein sorting-associated protein 8 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	67.2	66.112	3	0.017202	54366	160511_QHF_FH_JSI9i_3	36.847	35.596			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25279	3520	23960	158286;158287;158288	214245;214246;214247	214246			3	
ILVIGLSR	0	Unmodified	869.56984	0.56983769	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.8	0.4								1	4	2	1	1	1	69.619	60.347	2	0.012188	32647	160513_QHF_FH_JSI11Kac_6	63.054	33.694			1.0542	1.1476	18.917	4	0	Median	1.8252	1.5661	NaN	1	0	Median	0.9903	1.1457	NaN	1	0	Median	1.0546	1.0021	NaN	1	0	Median	1.0538	1.1496	NaN	1	0	Median	142960000	68959000	74006000	21720000	9529600	12191000	55841000	30408000	25433000	48807000	21202000	27605000	16597000	7818800	8778000	25280	3508	23961	158289;158290;158291;158292;158293	214248;214249	214248			2	
ILVKPDR	1	Unmodified	839.52289	0.52288749	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			15.28	14.348	3	0.036775	11540	160511_QHF_FH_JSI10i_3	36.395	0			0.98618	1.1647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98618	1.1647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56310000	6820500	49489000	0	0	0	56310000	6820500	49489000	0	0	0	0	0	0	25281	5575	23962	158294	214250	214250			1	
ILVNHQSFPNEENDVDK	1	Unmodified	1996.949	0.94903365	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			41.687	40.721	3	0.047794	35818	160511_QHF_FH_JSI10i_2	26.837	17.363			1.5622	1.9353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5622	1.9353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87230000	37229000	50002000	0	0	0	87230000	37229000	50002000	0	0	0	0	0	0	25282	2462	23963	158295	214251	214251			1	
ILVPEGTR	0	Unmodified	883.51272	0.51271674	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.551	28.638	2	0.0081696	24172	160511_QHF_FH_JSI12i_2	57.281	33.309			0.8988	0.94208	9.4205	4	0	Median	1.2595	1.0836	NaN	1	0	Median	0.72273	0.87005	NaN	1	0	Median	0.96402	0.96937	NaN	1	0	Median	0.83798	0.91556	NaN	1	0	Median	1014500000	497020000	517430000	191020000	79969000	111050000	235690000	129090000	106600000	361960000	173550000	188410000	225780000	114410000	111370000	25283	970	23964	158296;158297;158298;158299	214252;214253	214252			2	
ILVPIQQVLK	1	Unmodified	1149.7485	0.74853033	1632	P48723	HSPA13	Heat shock 70 kDa protein 13	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	82.188	81.292	2	0.055727	72183	160511_QHF_FH_JSI10i_2	41.979	34.759			0.71088	0.82239	14.431	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61783	0.74261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81795	0.91074	NaN	1	1	Median	54109000	27973000	26135000	0	0	0	25508000	14146000	11362000	0	0	0	28600000	13827000	14773000	25284	1632	23965	158300;158301	214254;214255	214255			2	
ILVPLVLLR	0	Unmodified	1034.7216	0.7215873	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	2	2	3	96.773	92.569	2	4.0737E-08	83938	160511_QHF_FH_JSI10i_3	154.11	133.59			0.8386	0.89345	13.271	8	7	Median	1.2415	1.0319	7.5169	2	1	Median	0.76882	0.9028	8.0317	2	2	Median	0.82816	0.78397	18.77	2	2	Median	0.8386	0.88647	0.82407	2	2	Median	1198600000	609720000	588830000	278120000	123540000	154580000	332260000	176040000	156210000	327900000	178000000	149900000	260290000	132140000	128140000	25285	4519	23966	158302;158303;158304;158305;158306;158307;158308;158309;158310	214256;214257;214258;214259;214260;214261;214262;214263;214264;214265	214257			10	
ILVQGCHAAAELIK	1	Unmodified	1521.8337	0.8337333	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	51.477	50.869	3	0.00034682	45136	160511_QHF_FH_JSI11i_3	63.128	51.152			1.6953	1.0736	33.897	3	0	Plateau	1.3075	1.0733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.0736	NaN	1	0	Median	1.8399	1.9309	NaN	1	0	Median	139430000	61116000	78316000	47042000	19738000	27304000	0	0	0	43581000	22744000	20837000	48808000	18634000	30174000	25286	2407	23967	158311;158312;158313	214266;214267;214268	214266			3	
ILVQQFEVQLQQYR	0	Unmodified	1790.9679	0.9679186	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	84.858	84.327	2	3.482E-06	72847	160511_QHF_FH_JSI12i_2	127.42	100.75			1.9379	2.2037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9379	2.2037	NaN	1	1	Median	16038000	3035300	13003000	0	0	0	0	0	0	6195700	0	6195700	9842300	3035300	6807100	25287	4477	23968	158314;158315;158316	214269;214270;214271	214270			3	
ILVQQTLNILQQLAVAMGPNIK	1	Unmodified	2404.3876	0.38758657	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		103.36	103.36	3	4.1945E-08	92437	160511_QHF_FH_JSI11i_3	89.483	85.679			0.89652	0.84895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89652	0.84895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11566000	6079700	5486300	0	0	0	0	0	0	11566000	6079700	5486300	0	0	0	25288	2485	23969	158317	214272	214272			1	
ILVSLIEVAQK	1	Unmodified	1211.7489	0.74892426	4401	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		79.685	79.019	2	0.013201	70256	160511_QHF_FH_JSI10i_2	53.756	31.608			0.45795	0.49818	14.397	2	2	Median	NaN	NaN	NaN	0	0	Median	0.45577	0.55157	NaN	1	1	Median	0.46014	0.44996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18718000	12766000	5952000	0	0	0	7981800	5860200	2121600	10736000	6905600	3830500	0	0	0	25289	4401	23970	158318;158319	214273;214274	214274			2	
ILVTGGSGLVGK	1	Unmodified	1099.6601	0.66010926	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		8.5	6.5		2						2		1		3		53.555	47.915	2	0.01344	41580	160511_QHF_FH_JSI11i_2	53.751	22.677			0.24243	0.2458	130.88	4	3	Median	0.12728	0.10686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33382	0.342	129.03	3	2	Median	NaN	NaN	NaN	0	0	Median	545260000	414270000	130990000	39201000	35645000	3555400	0	0	0	506060000	378620000	127440000	0	0	0	25290	2460	23971	158320;158321;158322;158323	214275;214276;214277;214278	214277			4	
ILVTLLHTLER	0	Unmodified	1306.7973	0.79727144	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			6						15	6	4	6	5	76.655	70.327	2;3	2.6708E-32	36328	160513_QHF_FH_JSI12Kac_6	168.3	132.62			2.4238	2.0517	155.59	21	21	Median	0.87159	0.71897	178.57	6	6	Median	3.7061	4.3708	221.1	4	4	Median	1.0388	0.96754	132.65	6	6	Median	1.8721	1.9791	137.64	5	5	Median	9677900000	5759200000	3918700000	2949400000	2184100000	765350000	4839400000	2738900000	2100500000	1213700000	502270000	711450000	675360000	333980000	341380000	25291	4496	23972	158324;158325;158326;158327;158328;158329;158330;158331;158332;158333;158334;158335;158336;158337;158338;158339;158340;158341;158342;158343;158344	214279;214280;214281;214282;214283;214284;214285;214286;214287;214288;214289;214290;214291;214292;214293;214294;214295;214296;214297;214298;214299;214300	214296			22	
ILVTSNDSR	0	Unmodified	1003.5298	0.52982336	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.43	4.34	2	4					1			1	2	1	3	18.263	16.675	2	0.0017027	14034	160511_QHF_FH_JSI9i_2	67.897	45.116			0.77861	0.86887	21.821	7	0	Median	1.018	0.86887	NaN	1	0	Median	0.6572	0.79095	14.799	2	0	Median	0.77861	0.7814	NaN	1	0	Median	0.78488	0.90411	28.639	3	0	Plateau	740700000	427340000	313360000	87660000	32043000	55617000	250750000	162460000	88293000	129950000	72570000	57381000	272340000	160270000	112060000	25292	2902	23973	158345;158346;158347;158348;158349;158350;158351	214301;214302;214303;214304;214305;214306	214304			5	
ILVVIEPLLIDEDYYAR	0	Unmodified	2033.1085	0.1084944	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9	7		1							1		1		1	99.358	96.407	2;3	0.0020391	52634	160513_QHF_FH_JSI10Kac_6	151.78	112.6			0.83886	0.96465	86.509	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4918	1.7784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4717	0.52325	NaN	1	0	Median	89812000	65140000	24672000	0	0	0	43543000	33490000	10053000	0	0	0	46268000	31649000	14619000	25293	542	23974	158352;158353	214307;214308	214308			1	
ILVVNAAYFVGK	1	Unmodified	1292.7493	0.74925861	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.68	3	4	4						6	4	5	4	4	82.725	79.553	2	5.8757E-20	39981	160513_QHF_FH_JSI9Kac_6	189.13	151.05			0.89341	0.92807	16.533	17	0	Median	1.1246	0.9501	23.917	4	0	Median	0.72677	0.89861	8.0944	5	0	Median	0.90605	0.89251	11.971	4	0	Median	0.95345	1.0399	21.116	4	0	Median	12516000000	6102800000	6412800000	3707300000	1623700000	2083500000	3863500000	1900100000	1963400000	3196900000	1764300000	1432600000	1748000000	814680000	933280000	25294	1464	23975	158354;158355;158356;158357;158358;158359;158360;158361;158362;158363;158364;158365;158366;158367;158368;158369;158370	214309;214310;214311;214312;214313;214314;214315;214316;214317;214318;214319;214320;214321;214322;214323;214324;214325;214326;214327;214328;214329;214330;214331;214332;214333;214334;214335;214336;214337;214338;214339;214340;214341;214342;214343;214344;214345	214336			36	
ILVYHGANNPK	1	Unmodified	1224.6615	0.66150624	3600	Q8NBP0	TTC13	Tetratricopeptide repeat protein 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	20.116	20.122	2;3	0.0022909	16352	160511_QHF_FH_JSI12i_3	61.962	7.413			0.7732	0.74802	19.088	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92332	0.85611	NaN	1	1	Median	0.64749	0.65357	NaN	1	1	Median	128740000	81480000	47255000	0	0	0	0	0	0	44599000	27402000	17197000	84136000	54078000	30057000	25295	3600	23976	158371;158372;158373	214346;214347;214348	214348			3	
ILWHTMK	1	Unmodified	927.50004	0.50004356	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	31.485	30.9	2;3	0.0044891	26091	160511_QHF_FH_JSI10i_3	58.981	36.34			0.60047	0.69498	52.942	5	1	Median	0.60047	0.47723	NaN	1	0	Median	0.59555	0.69498	NaN	1	0	Median	1.5712	1.5066	NaN	1	0	Median	0.70333	0.70926	64.712	2	1	Median	1016200000	583570000	432600000	51368000	26967000	24401000	185450000	109930000	75524000	308010000	180000000	128020000	471330000	266670000	204660000	25296	1685	23977	158374;158375;158376;158377;158378;158379	214349;214350;214351;214352;214353;214354	214350			6	
ILWHTMKNYYR	1	Acetyl (K)	1565.7813	0.7813038	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.224	56.584	3	0.015635	30728	160513_QHF_FH_JSI11Kac_6	47.288	33.609			0.14667	0.14565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14667	0.14565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3460700	3219900	240840	0	0	0	0	0	0	3460700	3219900	240840	0	0	0	25297	1685	23978	158380	214355	214355	1707		1	
ILWQGTEDLSVPGVEHEAR	0	Unmodified	2135.0647	0.064732107	393	O43924	PDE6D	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	73.894	73.587	3	2.6811E-06	63846	160511_QHF_FH_JSI12i_3	85.046	76.446			0.97884	0.97912	74.458	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72355	0.67947	100.99	2	2	Median	0.97884	0.97912	NaN	1	0	Median	136830000	81743000	55090000	0	0	0	0	0	0	83625000	55167000	28458000	53208000	26576000	26632000	25298	393	23979	158381;158382;158383	214356;214357;214358;214359;214360	214360			5	
ILYDILAFAK	1	Unmodified	1165.6747	0.67469669	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	2	1	2	2	94.441	90.411	2	9.1037E-06	43231	160513_QHF_FH_JSI12Kac_6	107.47	73.915			1.7884	2.0283	61.434	7	5	Median	1.0942	0.9183	67.898	2	1	Median	1.6851	2.0283	NaN	1	1	Median	2.6308	2.6205	22.422	2	2	Median	1.2794	1.3866	74.619	2	1	Median	243090000	101250000	141840000	68978000	35886000	33092000	25774000	11284000	14490000	82730000	23200000	59530000	65608000	30883000	34725000	25299	3439	23980	158384;158385;158386;158387;158388;158389;158390	214361;214362;214363;214364;214365;214366;214367	214367			7	
ILYEGTHLDPERK	1	Unmodified	1569.8151	0.81510635	2920	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.17	6.26		1	3						2	1	2	2	1	53.669	51.033	3;4	0.0023739	27934	160511_QHF_FH_JSI11i_3	47.532	36.058			0.5471	0.58632	62.785	4	2	Median	NaN	NaN	NaN	0	0	Median	0.35722	0.43693	NaN	1	1	Median	0.46315	0.43657	83.295	2	1	Median	0.9587	0.979	NaN	1	0	Median	775880000	396350000	379530000	58374000	0	58374000	121620000	34993000	86627000	416450000	281100000	135350000	179440000	80259000	99181000	25300	2920	23981	158391;158392;158393;158394;158395;158396	214368;214369;214370;214371;214372;214373	214368			6	
ILYESQR	0	Unmodified	907.47633	0.47633123	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	16.644	15.955	2	0.038514	12957	160511_QHF_FH_JSI12i_2	48.115	14.262			1.0034	1.0597	5.7726	4	0	Median	1.1754	1.0203	NaN	1	0	Median	0.90612	1.1007	NaN	1	0	Median	1.1112	1.104	NaN	1	0	Median	0.88176	0.98232	NaN	1	0	Median	314500000	160180000	154320000	58189000	25425000	32764000	55147000	33346000	21801000	102150000	50700000	51454000	99006000	50704000	48302000	25301	1020	23982	158397;158398;158399;158400	214374;214375	214374			2	
ILYHGYSLLYVQGNER	0	Unmodified	1923.9843	0.98429694	790	P02462	COL4A1	Collagen alpha-1(IV) chain;Arresten	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	72.044	63.282	3	2.0409E-05	34748	160513_QHF_FH_JSI10Kac_6	95.347	79.209			1.1478	1.1035	15.413	4	0	Median	1.3437	1.1734	NaN	1	0	Median	0.83079	0.97501	NaN	1	0	Median	1.4214	1.3831	NaN	1	0	Median	0.98049	1.0378	NaN	1	0	Median	453830000	205130000	248700000	76685000	27340000	49345000	198340000	99680000	98659000	97857000	40619000	57238000	80952000	37490000	43462000	25302	790	23983	158401;158402;158403;158404	214376	214376			1	
ILYIVASDPYSR	0	Unmodified	1395.7398	0.73981614	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.481								7	4	3	3	2	3	74.908	65.041	2	1.5307E-06	32452	160513_QHF_FH_JSI10Kac_5	114.84	87.099			0.95123	0.91464	21.994	11	7	Median	1.4829	1.2964	20.994	3	2	Plateau	0.95593	1.1423	15.015	3	2	Median	0.77227	0.75503	23.338	2	1	Median	0.6422	0.69962	20.703	3	2	Plateau	194560000	99128000	95431000	55713000	27762000	27951000	64971000	31733000	33238000	42386000	20487000	21900000	31489000	19147000	12342000	25303	5409	23984	158405;158406;158407;158408;158409;158410;158411;158412;158413;158414;158415	214377;214378;214379;214380;214381;214382;214383;214384;214385;214386;214387;214388;214389;214390	214385			14	
ILYLINQGEHLGTTEATEAFFAMTK	1	Unmodified	2797.3997	0.3996674	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5	5.51		3	1						1	1	2	1	1	99.747	98.54	3	1.6831E-48	50027	160513_QHF_FH_JSI10Kac_6	225.3	174.9			1.1817	1.2218	24.237	4	1	Median	1.2331	1.0568	NaN	1	0	Median	0.95805	1.1788	NaN	1	0	Median	1.9598	1.8466	NaN	1	1	Median	1.1325	1.2663	NaN	1	0	Median	889890000	495960000	393930000	178050000	96788000	81262000	349580000	242190000	107400000	197620000	57039000	140580000	164640000	99950000	64689000	25304	5708	23985	158416;158417;158418;158419;158420	214391;214392;214393;214394	214394			3	
ILYLIQAWAHAFR	0	Unmodified	1600.8878	0.88781778	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	1.12				1					18	5	5	5	4	94.339	86.039	2;3	4.0672E-20	46330	160513_QHF_FH_JSI12Kac_6	184.24	158.11			0.17275	0.15553	350.39	16	16	Median	0.1121	0.095565	440.34	4	4	Median	0.32954	0.39031	377.1	5	5	Median	0.58983	0.56359	410.82	4	4	Median	0.033046	0.034719	150.08	3	3	Plateau	17612000000	9291300000	8320700000	4593800000	1676000000	2917800000	6959400000	4866100000	2093300000	3773500000	1590400000	2183000000	2285300000	1158800000	1126500000	25305	225	23986	158421;158422;158423;158424;158425;158426;158427;158428;158429;158430;158431;158432;158433;158434;158435;158436;158437;158438;158439	214395;214396;214397;214398;214399;214400;214401;214402;214403;214404;214405;214406;214407;214408;214409;214410;214411;214412;214413	214406			19	
ILYLIQAWAHAFRNEPK	1	Unmodified	2069.1211	0.12106519	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	89.283	81.64	4	0.00034587	44749	160513_QHF_FH_JSI9Kac_6	107.66	84.327			0.92881	0.99204	253.15	5	5	Median	1.7632	1.5011	344.44	2	2	Median	2.6881	3.1633	356.64	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92881	0.99204	NaN	1	1	Median	345550000	174780000	170770000	111850000	51806000	60041000	205550000	103710000	101850000	0	0	0	28150000	19266000	8884200	25306	225	23987	158440;158441;158442;158443;158444	214414;214415;214416;214417;214418	214414			5	
ILYLTPEQEK	1	Unmodified	1232.6653	0.66525421	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	4	2	2	49.49	48.573	2	9.2833E-06	41835	160511_QHF_FH_JSI11i_2	105.52	94.356			0.89904	0.91497	24.893	9	4	Median	1.1061	0.91497	29.834	3	2	Plateau	0.82756	0.99831	13.216	2	0	Median	1.0019	0.98688	3.3365	2	0	Median	0.83	0.88594	28.484	2	2	Median	3290300000	1785100000	1505200000	723740000	341430000	382310000	774420000	420730000	353690000	1101200000	633060000	468170000	690910000	389840000	301070000	25307	2010	23988	158445;158446;158447;158448;158449;158450;158451;158452;158453;158454;158455	214419;214420;214421;214422;214423;214424;214425;214426;214427;214428;214429;214430;214431;214432;214433;214434	214431			16	
ILYMTDEVNDPSLTIK	1	Unmodified	1850.9336	0.9335665	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	78.815	78.296	2;3	1.4489E-07	71263	160511_QHF_FH_JSI12i_1	164.13	130.91			0.93955	0.86243	10.168	7	4	Median	1.0232	0.86859	11.75	2	2	Median	0.7409	0.86243	NaN	1	0	Median	0.97091	0.92053	15.328	2	2	Median	0.89729	0.92782	13.238	2	0	Median	358390000	197300000	161090000	60002000	30534000	29469000	84041000	54463000	29579000	125350000	61850000	63504000	88994000	50457000	38537000	25308	767	23989	158456;158457;158458;158459;158460;158461;158462	214435;214436;214437;214438;214439;214440;214441;214442;214443;214444	214437			10	
ILYPEIPRK	1	Unmodified	1127.6703	0.67028001	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			45.352	43.797	3	0.015592	36494	160511_QHF_FH_JSI10i_3	39.848	17.51			1.4113	1.6266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4113	1.6266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58888000	23667000	35222000	0	0	0	58888000	23667000	35222000	0	0	0	0	0	0	25309	4257	23990	158463	214445	214445			1	
ILYSFATAFR	0	Unmodified	1187.6339	0.63389451	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.547	72.799	2	0.022868	39682	160513_QHF_FH_JSI10Kac_6	46.457	30.575			1.0927	1.2485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0927	1.2485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112660000	57607000	55054000	0	0	0	112660000	57607000	55054000	0	0	0	0	0	0	25310	5599	23991	158464	214446	214446			1	
ILYSHLVDYFPEFDGPQR	0	Unmodified	2195.0688	0.068754852	1330	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	94.278	94.007	3	2.4667E-07	83651	160511_QHF_FH_JSI11i_3	108.49	99.393			0.87083	0.92881	5.0934	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87083	0.9752	NaN	1	0	Median	0.99008	0.92881	NaN	1	0	Median	0.84374	0.88077	NaN	1	0	Median	173880000	83488000	90395000	0	0	0	21810000	11383000	10427000	105210000	48329000	56879000	46865000	23777000	23088000	25311	1330	23992	158465;158466;158467	214447;214448;214449;214450;214451	214448			5	
ILYSQCGDVMR	0	Unmodified	1340.6217	0.62169161	1915	P60660	MYL6	Myosin light polypeptide 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	40.427	39.78	2	7.4301E-18	33909	160511_QHF_FH_JSI12i_2	155.84	135.32			1.0706	1.1526	14.966	8	0	Median	1.4983	1.2777	NaN	1	0	Median	0.95476	1.1526	10.633	2	0	Median	0.90175	0.92914	6.7802	3	0	Plateau	1.1878	1.2821	0.67377	2	0	Median	2482500000	1230400000	1252100000	173480000	76939000	96541000	670650000	358720000	311930000	1015700000	525510000	490210000	622650000	269190000	353470000	25312	1915	23993	158468;158469;158470;158471;158472;158473;158474;158475	214452;214453;214454;214455;214456;214457;214458;214459;214460;214461;214462;214463;214464	214455			13	
ILYSQCGDVMR	0	Oxidation (M)	1356.6166	0.61660624	1915	P60660	MYL6	Myosin light polypeptide 6	no	no	0	0	1	0			By MS/MS	By MS/MS	14.5	0.5							2	2				2	2	36.579	26.98	2	0.036272	16272	160513_QHF_FH_JSI12Kac_4	39.022	34.238			1.0621	1.099	39.883	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83675	0.81512	6.6779	2	0	Median	1.4551	1.5887	16.543	2	0	Median	12250000	6733300	5516600	0	0	0	0	0	0	6967300	4429600	2537700	5282500	2303700	2978900	25313	1915	23993	158476;158477;158478;158479	214465;214466	214466			2	
ILYYIFTK	1	Unmodified	1059.6005	0.60046911	4201	Q96PV6	LENG8	Leukocyte receptor cluster member 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	79.104	70.039	2	0.004669	38389	160513_QHF_FH_JSI11Kac_6	85.064	50.256			0.17104	0.30052	130.84	5	5	Linear	0.85364	0.72907	141.58	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82766	0.78643	203.81	2	2	Median	0.28563	0.30052	NaN	1	1	Median	1160500000	683960000	476550000	454820000	237810000	217010000	0	0	0	467810000	275520000	192300000	237870000	170630000	67238000	25314	4201	23994	158480;158481;158482;158483;158484	214467;214468;214469;214470;214471	214468			5	
ILYYSGYTR	0	Unmodified	1134.571	0.5709599	3948	Q969S9	GFM2	Ribosome-releasing factor 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	50.435	41.105	2	0.00036848	22702	160513_QHF_FH_JSI10Kac_6	98.523	73.629			0.8593	1.038	13.691	4	0	Linear	1.1609	0.99263	NaN	1	0	Median	0.83915	0.98777	NaN	1	0	Median	1.1189	1.0854	NaN	1	0	Median	1.2048	1.3238	NaN	1	0	Median	107000000	48792000	58205000	21960000	10157000	11802000	48567000	24064000	24504000	23094000	7895100	15199000	13375000	6675300	6699800	25315	3948	23995	158485;158486;158487;158488	214472;214473;214474;214475	214475			4	
IMADNPSWDGEK	1	Unmodified	1361.5922	0.59216562	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	39.004	38.314	2	5.0394E-05	34219	160511_QHF_FH_JSI10i_1	98.898	85.861			0.99627	1.095	13.599	5	1	Median	1.3234	1.095	NaN	1	0	Median	0.91317	1.0831	14.427	2	1	Median	1.2595	1.2281	NaN	1	0	Median	0.83658	0.89143	NaN	1	0	Median	935430000	478030000	457400000	159310000	61408000	97907000	230150000	128200000	101950000	258750000	130260000	128480000	287220000	158160000	129060000	25316	3101	23996	158489;158490;158491;158492;158493	214476;214477;214478;214479;214480;214481;214482;214483;214484	214480			9	
IMADNPSWDGEK	1	Oxidation (M)	1377.5871	0.58708025	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			32.587	32.247	2	0.015661	28789	160511_QHF_FH_JSI10i_1	52.79	42.266			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25317	3101	23996	158494	214485	214485		2195	1	
IMAISAGDAYASNK	1	Unmodified	1410.6813	0.68131498	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.562	45.171	2	0.00061524	38629	160511_QHF_FH_JSI12i_2	90.653	69.19			1.176	1.2882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.176	1.2882	NaN	1	1	Median	19435000	10707000	8728100	0	0	0	0	0	0	0	0	0	19435000	10707000	8728100	25318	4330	23997	158495	214486	214486			1	
IMAQMSEMQR	0	Unmodified	1223.5461	0.54608383	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.072	33.661	2	0.0024839	28702	160511_QHF_FH_JSI11i_2	59.597	48.445			1.2384	1.2914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2384	1.2914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39747000	18330000	21417000	0	0	0	0	0	0	39747000	18330000	21417000	0	0	0	25319	3430	23998	158496	214487	214487			1	
IMASSPDMDLATVSALR	0	Unmodified	1776.875	0.87500577	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.38	0.484	5	3								2	3	3		79.65	79.114	2;3	6.0991E-06	70319	160511_QHF_FH_JSI9i_1	95.067	85.146			0.74731	0.70107	27.483	6	2	Median	0.83665	0.70107	27.374	2	1	Median	0.81776	0.95837	32.098	3	1	Plateau	0.55467	0.5458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277110000	146870000	130240000	63761000	35967000	27795000	158380000	76557000	81827000	54966000	34348000	20619000	0	0	0	25320	1394	23999	158497;158498;158499;158500;158501;158502;158503;158504	214488;214489;214490;214491;214492;214493;214494;214495;214496;214497	214493			10	
IMASSPDMDLATVSALRK	1	Unmodified	1904.97	0.96996879	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	69.808	69.051	2;3	1.1929E-10	61560	160511_QHF_FH_JSI11i_3	148.68	118.87			0.92882	0.87279	20.089	9	2	Median	1.3628	1.1394	18.992	2	0	Median	0.82161	0.98973	24.458	2	0	Median	0.90504	0.87279	8.4701	3	1	Plateau	0.90111	0.9603	28.552	2	1	Median	3186300000	1742100000	1444200000	523790000	264980000	258820000	635640000	352770000	282870000	1247600000	711560000	536060000	779280000	412810000	366480000	25321	1394	24000	158505;158506;158507;158508;158509;158510;158511;158512;158513	214498;214499;214500;214501;214502;214503;214504;214505;214506;214507;214508;214509;214510;214511;214512;214513;214514	214501			17	
IMASSPDMDLATVSALRK	1	Oxidation (M)	1920.9649	0.96488341	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	1	1		By MS/MS			3	0			2								2			63.631	62.12	3	0.00020944	53667	160511_QHF_FH_JSI10i_3	68.567	51.688			1.035	1.1876	24.003	2	2	Median	NaN	NaN	NaN	0	0	Median	1.035	1.1876	24.003	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89259000	49510000	39750000	0	0	0	89259000	49510000	39750000	0	0	0	0	0	0	25322	1394	24000	158514;158515	214515;214516	214516		1040;1041	2	
IMATPEQVGK	1	Unmodified	1072.5587	0.55868065	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.22	4	4	2			3	1			3	4	4	3	31.594	28.413	2	5.1307E-06	25351	160511_QHF_FH_JSI12i_1	109.11	93.448			0.97402	0.94066	21.692	14	2	Median	1.1428	0.9628	14.106	3	0	Median	0.97827	1.138	31.765	4	2	Median	0.9276	0.89678	20.657	4	0	Median	0.78563	0.83407	19.803	3	0	Median	5149300000	2296400000	2852900000	1374500000	557690000	816790000	1441100000	664600000	776480000	1361700000	624040000	737650000	972040000	450050000	521980000	25323	1023	24001	158516;158517;158518;158519;158520;158521;158522;158523;158524;158525;158526;158527;158528;158529	214517;214518;214519;214520;214521;214522;214523;214524;214525;214526;214527;214528;214529;214530;214531;214532;214533;214534;214535;214536;214537;214538;214539;214540;214541	214523			25	
IMATPEQVGK	1	Oxidation (M)	1088.5536	0.55359527	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	27.051	26.414	2	0.015494	25431	160511_QHF_FH_JSI12i_1	68.846	45.323			1.8031	1.6626	40.136	4	1	Median	1.94	1.6064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5347	2.4881	NaN	1	0	Median	1.2442	1.2717	42.771	2	1	Median	582570000	214370000	368200000	194850000	69041000	125810000	0	0	0	173760000	56966000	116800000	213960000	88365000	125590000	25324	1023	24001	158530;158531;158532;158533	214542;214543;214544	214543		615	2	
IMATPEQVGKMK	2	Acetyl (K)	1373.7047	0.70469296	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	56.994	46.359	2	0.036483	26094	160513_QHF_FH_JSI12Kac_4	45.137	40.838			0.7641	0.8744	2.0857	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70588	0.8616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82711	0.88739	NaN	1	0	Median	13829000	7624200	6205200	0	0	0	8234400	4416800	3817600	0	0	0	5595000	3207400	2387600	25325	1023	24002	158534;158535	214545;214546	214546	842		2	
IMATPEQVGKMK	2	Acetyl (K);Oxidation (M)	1389.6996	0.69960758	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	1	0	1	1				By MS/MS	14	0							1						1	45.484	35.405	2	0.0041371	20620	160513_QHF_FH_JSI12Kac_4	66.435	48.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1537200	1537200	0	0	0	0	0	0	0	0	0	0	1537200	1537200	0	25326	1023	24002	158536	214547	214547	842	615;616	1	
IMCEILSSLQIGDFLVK	1	Unmodified	1965.0315	0.031506409	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.3	102.19	3	0.00033606	89977	160511_QHF_FH_JSI11i_2	65.225	47.308			0.86716	0.86954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86716	0.86954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56812000	30821000	25991000	0	0	0	0	0	0	56812000	30821000	25991000	0	0	0	25327	1012	24003	158537	214548	214548			1	
IMDPNIVGSEHYDVAR	0	Oxidation (M)	1830.857	0.85704752	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.4	4	9	4				1	4		5	6	5	6	48.745	45.566	2;3	6.3034E-07	40236	160511_QHF_FH_JSI10i_2	95.018	79.817			0.97656	1.0541	8.1198	17	3	Median	1.2778	1.1039	9.9764	3	0	Median	0.86745	1.0636	4.9519	4	1	Median	1.0052	0.99508	8.06	4	0	Median	0.97522	1.0461	6.456	6	2	Median	1776600000	925930000	850690000	261660000	112760000	148900000	464120000	257870000	206240000	585210000	308260000	276950000	465620000	247030000	218590000	25328	851	24004	158538;158539;158540;158541;158542;158543;158544;158545;158546;158547;158548;158549;158550;158551;158552;158553;158554;158555;158556;158557;158558;158559	214549;214550;214551;214552;214553;214554;214555;214556;214557;214558;214559;214560;214561;214562;214563;214564;214565;214566;214567;214568;214569;214570;214571;214572;214573;214574	214571		370	26	
IMDPNIVGSEHYDVAR	0	Unmodified	1814.8621	0.8621329	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.8	7	8	7				2	4	2	8	7	6	9	56.313	52.841	2;3	4.8327E-40	46703	160511_QHF_FH_JSI10i_2	224.05	214.86			1.0274	1.0342	17.377	29	6	Median	1.3535	1.1141	16.535	8	2	Median	0.83193	1.0016	21.678	7	2	Median	1.0665	1.0434	11.638	6	0	Median	0.95137	1.0439	17.813	8	2	Median	22368000000	10576000000	11792000000	9038400000	3510100000	5528300000	5680900000	3174000000	2506900000	1962300000	990770000	971550000	5686500000	2900800000	2785600000	25329	851	24004	158560;158561;158562;158563;158564;158565;158566;158567;158568;158569;158570;158571;158572;158573;158574;158575;158576;158577;158578;158579;158580;158581;158582;158583;158584;158585;158586;158587;158588;158589	214575;214576;214577;214578;214579;214580;214581;214582;214583;214584;214585;214586;214587;214588;214589;214590;214591;214592;214593;214594;214595;214596;214597;214598;214599;214600;214601;214602;214603;214604;214605;214606;214607;214608;214609;214610;214611;214612;214613	214608			39	
IMDQAANPQYVWDR	0	Unmodified	1705.7882	0.78823967	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	58.141	57.615	2	0.0010979	52068	160511_QHF_FH_JSI10i_1	66.004	55.633			0.47297	0.52482	3.1345	2	0	Median	NaN	NaN	NaN	0	0	Median	0.45381	0.53658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49294	0.51332	NaN	1	0	Median	122320000	80881000	41441000	0	0	0	58768000	42291000	16478000	0	0	0	63554000	38591000	24963000	25330	3266	24005	158590;158591	214614;214615	214615			1	
IMDYSLLLGIHDIIR	0	Unmodified	1770.9702	0.97022678	3697	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	92.748	84.397	3	1.1722E-07	45354	160513_QHF_FH_JSI12Kac_6	113.59	102.54			1.075	1.1481	21.241	4	0	Median	0.99985	0.87206	NaN	1	0	Median	0.90698	1.0705	NaN	1	0	Median	1.4872	1.4376	NaN	1	0	Median	1.1558	1.2314	NaN	1	0	Median	313820000	152680000	161140000	82097000	36194000	45904000	119720000	68041000	51677000	67177000	28098000	39078000	44826000	20346000	24480000	25331	3697	24006	158592;158593;158594;158595	214616;214617;214618;214619;214620;214621	214618			6	
IMEAIELYREETAK	1	Unmodified	1694.8549	0.85492225	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	63.442	63.299	3	0.013564	56083	160511_QHF_FH_JSI11i_3	46.318	27.495			0.38737	0.38176	494.39	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.959	12.59	NaN	1	1	Median	0.011579	0.011576	NaN	1	1	Median	117680000	64763000	52915000	0	0	0	0	0	0	63380000	10643000	52737000	54297000	54120000	177660	25332	5451	24007	158596;158597	214622;214623	214622			2	
IMEFTTTLLNTSPEGWK	1	Unmodified	1966.971	0.97101464	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.276	1	11								3	3	4	2	97.699	97.517	2;3	2.8668E-28	85602	160511_QHF_FH_JSI11i_2	221.09	197.87			0.85873	0.86249	22.523	11	7	Median	1.1148	0.93808	23.574	3	3	Median	0.93485	1.1355	38.084	3	2	Median	0.85873	0.86249	15.409	3	2	Median	0.69401	0.77228	0.80027	2	0	Median	1009900000	505630000	504320000	141860000	66005000	75860000	284310000	152270000	132040000	404220000	190150000	214060000	179560000	97197000	82361000	25333	2094	24008	158598;158599;158600;158601;158602;158603;158604;158605;158606;158607;158608;158609	214624;214625;214626;214627;214628;214629;214630;214631;214632;214633;214634;214635;214636;214637;214638;214639;214640	214636			17	
IMEFTTTLLNTSPEGWK	1	Oxidation (M)	1982.9659	0.96592926	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		87.529	86.959	2	0.0090858	76505	160511_QHF_FH_JSI11i_2	54.7	32.502			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25334	2094	24008	158610	214641	214641		1767	1	
IMEGPAFNFLDAPAVR	0	Unmodified	1746.8763	0.8763264	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.64	2	7	3							2	3	4	3	95.226	94.939	2;3	1.7908E-05	81701	160511_QHF_FH_JSI12i_2	116.01	82.786			1.049	1.0659	13.769	12	1	Median	1.3479	1.1592	22.641	2	0	Median	0.81878	0.99599	13.315	3	0	Median	1.049	1.0475	3.9673	4	1	Median	0.95492	1.0731	16.013	3	0	Plateau	1220100000	506560000	713570000	225870000	77752000	148120000	319870000	143620000	176250000	447470000	189570000	257900000	226930000	95621000	131310000	25335	990	24009	158611;158612;158613;158614;158615;158616;158617;158618;158619;158620;158621;158622	214642;214643;214644;214645;214646;214647;214648;214649;214650;214651;214652	214645			11	
IMEHAGK	1	Unmodified	784.39016	0.39015876	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	5.3202	5.0069	2	0.035052	2975	160511_QHF_FH_JSI11i_3	50.966	25.967			1.0581	0.81231	20.405	5	1	Linear	1.0588	0.90523	NaN	1	0	Median	0.97558	1.2023	NaN	1	0	Median	1.2659	1.2362	17.778	2	1	Median	0.76588	0.85237	NaN	1	0	Median	614630000	345970000	268660000	111660000	54687000	56969000	89264000	49600000	39664000	162130000	77387000	84742000	251580000	164300000	87290000	25336	552	24010	158623;158624;158625;158626;158627	214653;214654	214653			2	
IMEIVDAITTTAQSHQR	0	Oxidation (M)	1928.9626	0.96257522	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	57.983	57.854	3	1.6385E-06	49797	160511_QHF_FH_JSI12i_3	111.78	15.003			7.7432	7.0771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.7432	7.0771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56649000	1789300	54859000	0	0	0	0	0	0	39151000	1789300	37362000	17497000	0	17497000	25337	897	24011	158628;158629	214655;214656	214656		462	2	
IMEIVDAITTTAQSHQR	0	Unmodified	1912.9677	0.9676606	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.93		6	8						5	6	4	5	4	73.694	70.394	2;3	1.6677E-22	61584	160511_QHF_FH_JSI12i_3	170.78	23.713			0.1913	0.21071	114.07	16	10	Median	1.2213	1.0017	159.86	5	2	Median	0.17894	0.2162	123.76	3	2	Median	0.18031	0.17953	95.634	4	3	Median	0.16894	0.18357	88.268	4	3	Median	2218000000	1506900000	711090000	726630000	393910000	332720000	418120000	311800000	106330000	399750000	329110000	70641000	673450000	472050000	201390000	25338	897	24011	158630;158631;158632;158633;158634;158635;158636;158637;158638;158639;158640;158641;158642;158643;158644;158645;158646;158647;158648	214657;214658;214659;214660;214661;214662;214663;214664;214665;214666;214667;214668;214669;214670;214671;214672;214673;214674;214675;214676;214677;214678	214675			22	
IMEMSAK	1	Unmodified	808.3823	0.38229619	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.576	17.541	2	0.04276	14275	160511_QHF_FH_JSI12i_2	46.016	40.929			0.6477	0.74568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6477	0.74568	NaN	1	0	Median	133290000	65468000	67827000	0	0	0	0	0	0	0	0	0	133290000	65468000	67827000	25339	1645	24012	158649	214679	214679			1	
IMENNLENELK	1	Unmodified	1345.6548	0.65476588	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	48.973	48.31	2	0.011887	43941	160511_QHF_FH_JSI12i_1	55.353	33.905			0.87021	0.87865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87021	0.87865	NaN	1	1	Median	114380000	63810000	50568000	0	0	0	0	0	0	0	0	0	114380000	63810000	50568000	25340	4181	24013	158650	214680	214680			1	
IMEPLFR	0	Unmodified	904.48406	0.48405915	2394	Q13362	PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	55.324	54.787	2	0.056414	47442	160511_QHF_FH_JSI11i_2	44.692	14.507			1.1245	0.9692	20.59	5	0	Median	1.1245	0.9692	NaN	1	0	Median	0.71864	0.88738	NaN	1	0	Median	1.1124	1.0764	30.448	2	0	Median	1.3053	1.2854	NaN	1	0	Median	282690000	141950000	140740000	44959000	19290000	25669000	47441000	27254000	20187000	144600000	74970000	69627000	45697000	20441000	25256000	25341	2394	24014	158651;158652;158653;158654;158655	214681;214682	214682			2	
IMETDPLQQGQALASALK	1	Unmodified	1912.9928	0.99281272	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	88.232	87.783	2;3	7.1677E-07	79957	160511_QHF_FH_JSI11i_1	89.507	65.902			0.99	0.96225	22.876	5	3	Median	0.8498	0.71535	NaN	1	1	Median	1.2587	1.3377	NaN	1	1	Median	0.99	0.96225	NaN	1	1	Median	0.96269	0.95449	11.31	2	0	Median	56626000	25723000	30904000	7157000	3926900	3230200	7280900	2017700	5263200	15008000	5063400	9944700	27180000	14715000	12466000	25342	5041	24015	158656;158657;158658;158659;158660;158661	214683;214684;214685;214686;214687;214688;214689	214684			7	
IMEVIDAITTTAQSHQR	0	Unmodified	1912.9677	0.9676606	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.44		5	9						2	3	4	4	5	72.091	70.555	2;3	8.381E-53	61649	160511_QHF_FH_JSI12i_3	203.52	13.713			0.88212	0.8542	101.08	13	8	Median	1.2213	1.0017	117.31	3	2	Median	0.62168	0.78015	100.69	3	1	Median	0.92779	0.8542	84.359	3	2	Median	0.87826	0.92119	111.81	4	3	Median	3158600000	1356600000	1802000000	584660000	193880000	390780000	599450000	384890000	214560000	1179500000	461940000	717560000	794970000	315910000	479060000	25343	1129	24016	158662;158663;158664;158665;158666;158667;158668;158669;158670;158671;158672;158673;158674;158675;158676;158677	214690;214691;214692;214693;214694;214695;214696;214697;214698;214699;214700;214701;214702;214703;214704;214705;214706	214700			17	
IMEVIDAITTTAQSHQR	0	Oxidation (M)	1928.9626	0.96257522	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	58.056	57.802	3	4.192E-06	49711	160511_QHF_FH_JSI12i_3	103.13	8.5621			2.5397	2.5657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5397	2.5657	NaN	1	1	Median	35417000	4958100	30459000	0	0	0	0	0	0	0	0	0	35417000	4958100	30459000	25344	1129	24016	158678	214707	214707		753	1	
IMFEVQDLK	1	Unmodified	1121.5791	0.57908174	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		69.547	68.91	2	0.00087552	60790	160511_QHF_FH_JSI9i_2	83.948	54.799			1.3901	1.6581	16.766	4	3	Median	1.4017	1.2331	NaN	1	1	Median	1.373	1.6581	1.8878	2	1	Median	1.7811	1.8066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	647300000	181980000	465330000	127150000	42148000	85000000	256760000	71801000	184960000	263400000	68030000	195370000	0	0	0	25345	2517	24017	158679;158680;158681;158682	214708;214709;214710;214711	214709			4	
IMFHATVATQTQFFHVK	1	Unmodified	2005.0244	0.024387617	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	74.397	65.93	3;4	2.0403E-08	36446	160513_QHF_FH_JSI10Kac_6	116.87	106.95			1.2289	1.0586	14.99	3	0	Median	1.2289	1.0586	NaN	1	0	Median	0.88776	1.0469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2728	1.3645	NaN	1	0	Median	210100000	108090000	102010000	86402000	46216000	40186000	67516000	34977000	32539000	0	0	0	56184000	26898000	29286000	25346	2752	24018	158683;158684;158685;158686	214712;214713;214714	214713			3	
IMFVDPSLTVR	0	Unmodified	1276.6849	0.6849438	747	O95994;Q8TD06	AGR2;AGR3	Anterior gradient protein 2 homolog;Anterior gradient protein 3 homolog	yes	no	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	79.831	79.029	2	0.0022359	68226	160511_QHF_FH_JSI12i_2	57.708	49.488			0.93297	1.0297	12.22	4	0	Median	1.4665	1.2446	NaN	1	0	Median	0.83814	1.009	NaN	1	0	Median	0.92027	0.93153	NaN	1	0	Median	0.94585	1.0508	NaN	1	0	Median	750510000	443370000	307140000	160630000	104260000	56368000	146450000	86655000	59793000	269370000	156710000	112660000	174060000	95742000	78323000	25347	747	24019	158687;158688;158689;158690	214715	214715			1	
IMGIPEEEQMGLLR	0	Unmodified	1614.8109	0.81094895	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	4	8	4							4	4	4	4	81.311	80.621	2;3	1.5808E-14	71005	160511_QHF_FH_JSI11i_2	156.12	145.89			1.0012	1.0626	6.7771	16	1	Median	1.2865	1.0625	7.2766	4	0	Median	0.88022	1.0613	6.9687	4	0	Median	1.0581	1.0559	4.1444	4	1	Median	0.98117	1.0794	9.7542	4	0	Median	4999400000	2457300000	2542100000	1060500000	419740000	640730000	975240000	516380000	458860000	1810200000	930250000	879980000	1153500000	590900000	562580000	25348	1436	24020	158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706	214716;214717;214718;214719;214720;214721;214722;214723;214724;214725;214726;214727;214728;214729;214730;214731;214732;214733;214734;214735;214736;214737;214738;214739;214740;214741	214735			26	
IMGIPEEEQMGLLR	0	Oxidation (M)	1630.8059	0.80586357	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	69.764	68.863	2	0.0011899	59373	160511_QHF_FH_JSI12i_2	68.551	40.538			1.0732	1.261	5.8414	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0497	1.261	NaN	1	0	Median	1.1361	1.144	NaN	1	0	Median	1.1777	1.2701	NaN	1	0	Median	200610000	101320000	99286000	0	0	0	74320000	37965000	36355000	69237000	32502000	36735000	57050000	30854000	26196000	25349	1436	24020	158707;158708;158709	214742;214743;214744	214742		1101	3	
IMGLDLPDGGHLTHGFMTDK	1	Unmodified	2154.0238	0.02379527	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	81.301	81.077	3;4	3.9311E-10	70122	160511_QHF_FH_JSI12i_3	113.47	104.43			0.89413	0.85302	16.608	5	2	Median	NaN	NaN	NaN	0	0	Median	0.63408	0.78839	NaN	1	1	Median	0.98595	0.92927	12.108	2	1	Median	0.75363	0.77504	24.164	2	0	Median	825620000	427040000	398580000	0	0	0	29849000	12071000	17778000	333710000	163490000	170220000	462060000	251480000	210590000	25350	1414	24021	158710;158711;158712;158713;158714	214745;214746;214747;214748;214749;214750;214751;214752;214753;214754;214755	214751			11	
IMGLDLPDGGHLTHGFMTDK	1	Oxidation (M)	2170.0187	0.018709892	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	73.718	73.523	3;4	0.00084142	64048	160511_QHF_FH_JSI12i_3	43.116	28.193			0.7694	0.76981	37.667	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46491	0.44311	NaN	1	1	Median	0.80727	0.83706	11.845	2	1	Median	109320000	70387000	38929000	0	0	0	0	0	0	36686000	29344000	7341800	72630000	41043000	31587000	25351	1414	24021	158715;158716;158717	214756;214757;214758;214759	214757		1064;1065	4	
IMGLDLPDGGHLTHGYMSDVK	1	Oxidation (M)	2271.0664	0.066388366	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	66.942	66.843	3	2.1959E-07	58163	160511_QHF_FH_JSI12i_3	84.249	70.794			1.1912	1.1964	19.925	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1476	1.0736	26.756	2	0	Median	1.1912	1.1964	NaN	1	0	Median	221570000	91160000	130410000	0	0	0	0	0	0	134240000	58997000	75241000	87329000	32164000	55165000	25352	1415	24022	158718;158719;158720;158721	214760;214761;214762;214763;214764;214765;214766;214767;214768	214768		1069;1070	9	
IMGLDLPDGGHLTHGYMSDVK	1	Unmodified	2255.0715	0.071473744	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.383		23	5							7	3	12	6	76.722	76.046	2;3;4	7.422E-16	67015	160511_QHF_FH_JSI11i_3	138.03	123.8			1.0275	0.98958	38.354	24	11	Median	1.1923	1.0129	31.154	5	4	Median	0.76558	0.94133	38.876	3	0	Plateau	0.99899	1.0107	38.285	11	6	Median	0.90575	0.96892	54.375	5	1	Median	3609600000	1714400000	1895200000	343050000	139800000	203260000	269390000	137010000	132380000	2174900000	1083000000	1091800000	822240000	354550000	467700000	25353	1415	24022	158722;158723;158724;158725;158726;158727;158728;158729;158730;158731;158732;158733;158734;158735;158736;158737;158738;158739;158740;158741;158742;158743;158744;158745;158746;158747;158748;158749	214769;214770;214771;214772;214773;214774;214775;214776;214777;214778;214779;214780;214781;214782;214783;214784;214785;214786;214787;214788;214789;214790;214791;214792;214793;214794;214795;214796;214797;214798;214799;214800;214801;214802;214803;214804;214805;214806;214807;214808;214809	214773			40	
IMGLDLPDGGHLTHGYMSDVKR	1	Acetyl (K)	2453.1831	0.18314946	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			77.812	71.745	3	0.033297	39300	160513_QHF_FH_JSI10Kac_6	41.76	29.097			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19063000	0	19063000	0	0	0	19063000	0	19063000	0	0	0	0	0	0	25354	1415	24023	158750	214810	214810			1	
IMGNIWDASLVVER	0	Unmodified	1601.8236	0.82356254	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		89.496	89.001	2;3	0.00125	78990	160511_QHF_FH_JSI10i_2	78.096	63.938			1.0513	0.98776	8.4081	4	3	Median	1.1537	0.98058	NaN	1	1	Median	0.71261	0.88363	NaN	1	1	Median	1.0513	1.0389	6.1055	2	1	Median	NaN	NaN	NaN	0	0	Median	234130000	135300000	98834000	60605000	28462000	32143000	59884000	40571000	19313000	113650000	66268000	47378000	0	0	0	25355	558	24024	158751;158752;158753;158754	214811;214812;214813;214814	214814			3	
IMGNLGAADIDHK	1	Unmodified	1353.6711	0.67108465	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	39.599	38.931	3	3.8542E-05	34205	160511_QHF_FH_JSI10i_2	76.588	69.7			0.86424	0.94268	46.774	6	1	Median	0.85453	0.72935	NaN	1	0	Median	0.80156	0.99238	NaN	1	0	Median	0.9759	0.95912	9.7132	2	0	Median	1.4044	1.4856	83.223	2	1	Median	472970000	232700000	240270000	65587000	35330000	30257000	79191000	51539000	27652000	213300000	101110000	112180000	114900000	44714000	70183000	25356	542	24025	158755;158756;158757;158758;158759;158760	214815;214816;214817;214818;214819;214820;214821	214820			6	
IMGNLNLPK	1	Unmodified	998.55829	0.55828672	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.633	50.657	2	0.023243	43698	160511_QHF_FH_JSI11i_2	41.652	22.87			0.91929	0.93184	12.147	4	0	Median	0.9178	0.77485	NaN	1	0	Median	0.71797	0.8924	NaN	1	0	Median	0.95439	0.97302	NaN	1	0	Median	0.92077	1.0224	NaN	1	0	Median	401330000	211830000	189500000	67250000	32594000	34656000	98746000	59819000	38927000	135680000	72059000	63616000	99658000	47359000	52299000	25357	706	24026	158761;158762;158763;158764	214822;214823	214823			2	
IMGPNYTPGK	1	Unmodified	1076.5325	0.5324659	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.35	6.39	1	4	4				3	4	4	4	6	5	5	35.506	29.908	2	2.0889E-06	26125	160511_QHF_FH_JSI11i_3	111.74	87.767			1.0053	0.97676	18.887	20	4	Median	1.1932	0.97676	5.428	4	2	Median	0.96614	1.1515	28.836	6	1	Median	0.93196	0.94061	21.021	5	1	Median	0.87376	0.9594	12.208	5	0	Median	14352000000	7054700000	7297600000	2236900000	1014000000	1222900000	3672700000	1859600000	1813100000	4681500000	2263400000	2418100000	3761200000	1917700000	1843500000	25358	1033	24027	158765;158766;158767;158768;158769;158770;158771;158772;158773;158774;158775;158776;158777;158778;158779;158780;158781;158782;158783;158784	214824;214825;214826;214827;214828;214829;214830;214831;214832;214833;214834;214835;214836;214837;214838;214839;214840;214841;214842;214843;214844;214845;214846;214847	214824			24	
IMGPNYTPGK	1	Oxidation (M)	1092.5274	0.52738052	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	4.97	2	5	9				1	3		4	6	5	5	29.665	27.047	2	0.00010628	26191	160511_QHF_FH_JSI11i_3	106.6	67.808			1.2106	1.0833	57.45	19	2	Median	1.2785	1.0448	69.151	4	0	Median	1.1206	1.3136	42.876	6	0	Median	0.99996	0.9872	58.55	4	1	Median	1.1057	1.0972	77.312	5	1	Median	1645900000	684360000	961500000	252090000	75907000	176180000	544180000	246970000	297210000	254570000	114820000	139750000	595030000	246670000	348360000	25359	1033	24027	158785;158786;158787;158788;158789;158790;158791;158792;158793;158794;158795;158796;158797;158798;158799;158800;158801;158802;158803;158804	214848;214849;214850;214851;214852;214853;214854;214855;214856;214857;214858;214859;214860;214861;214862;214863;214864;214865	214849		635	18	
IMGPNYTPGKK	2	Oxidation (M)	1220.6223	0.62234354	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.96	0.192		1	25							8	7	6	5	20.877	20.176	2;3	9.2593E-07	14288	160511_QHF_FH_JSI12i_3	112.13	99.912			0.89416	0.94527	91.571	24	2	Median	1.2546	1.0147	137.79	8	2	Median	0.78887	0.9022	56.39	6	0	Median	1.1025	1.0381	49.851	5	0	Median	0.88861	0.89758	81.354	5	0	Median	11759000000	6184400000	5574200000	2980400000	1448200000	1532100000	3046500000	1572300000	1474200000	2898600000	1639700000	1258800000	2833100000	1524100000	1309100000	25360	1033	24028	158805;158806;158807;158808;158809;158810;158811;158812;158813;158814;158815;158816;158817;158818;158819;158820;158821;158822;158823;158824;158825;158826;158827;158828;158829;158830	214866;214867;214868;214869;214870;214871;214872;214873;214874;214875;214876;214877;214878;214879;214880;214881;214882;214883;214884;214885;214886;214887;214888;214889;214890;214891;214892;214893;214894;214895;214896	214891		635	30	
IMGPNYTPGKK	2	Unmodified	1204.6274	0.62742892	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.51		7	8						4	5	5	5	4	24.356	21.971	2;3	1.8584E-08	18576	160511_QHF_FH_JSI11i_3	110.86	101.2			0.94171	0.98584	24.489	19	1	Median	1.2658	1.1193	12.132	5	0	Median	0.80519	0.92861	16.599	5	0	Median	1.1237	1.0383	40.809	5	1	Median	0.87213	0.88018	17.627	4	0	Median	26566000000	13876000000	12690000000	6669100000	2703400000	3965700000	5024400000	2485600000	2538800000	5924600000	3173400000	2751100000	8948000000	5514000000	3433900000	25361	1033	24028	158831;158832;158833;158834;158835;158836;158837;158838;158839;158840;158841;158842;158843;158844;158845;158846;158847;158848;158849	214897;214898;214899;214900;214901;214902;214903;214904;214905;214906;214907;214908;214909;214910;214911;214912;214913;214914;214915;214916;214917;214918;214919;214920;214921;214922;214923;214924;214925;214926;214927;214928;214929;214930;214931;214932;214933;214934;214935;214936;214937;214938;214939;214940;214941;214942;214943;214944;214945	214900			49	
IMGPNYTPGKKEDLYLK	3	Unmodified	1966.0234	0.023384564	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		49.598	48.329	3;4	1.1824E-05	39680	160511_QHF_FH_JSI9i_3	88.133	77.666			0.83221	0.94165	21.327	5	2	Median	0.96101	0.78876	26.053	2	1	Median	0.67077	0.78125	29.578	2	1	Median	1.0172	0.94165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	314790000	173960000	140830000	102740000	51433000	51311000	97374000	57617000	39757000	114670000	64907000	49767000	0	0	0	25362	1033	24029	158850;158851;158852;158853;158854	214946;214947;214948;214949;214950	214949			5	
IMGTSPLQIDR	0	Unmodified	1229.6438	0.64380726	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							2	2	3	1	51.779	51.134	2	0.00015509	45325	160511_QHF_FH_JSI11i_3	101.66	82.57			1.0351	0.9616	16.282	8	0	Median	1.1405	0.92505	0.69067	2	0	Median	0.74225	0.89898	19.492	2	0	Median	0.95186	0.99472	17.546	3	0	Median	1.2362	1.2637	NaN	1	0	Median	3818900000	2048000000	1770800000	715560000	349230000	366330000	987430000	615820000	371610000	1824600000	958090000	866530000	291250000	124880000	166370000	25363	1372	24030	158855;158856;158857;158858;158859;158860;158861;158862	214951;214952;214953;214954;214955;214956;214957;214958;214959;214960;214961	214952			11	
IMGTSPLQIDRAEDR	0	Unmodified	1700.8516	0.85156821	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.5	0.5		5	5							4	4	1	1	47.163	46.155	2;3	3.9199E-05	38481	160511_QHF_FH_JSI10i_3	88.075	74.662			1.1989	1.0872	24.058	10	2	Median	1.3439	1.1322	27.047	4	2	Median	1.0335	1.222	20.66	4	0	Median	1.0382	0.99489	NaN	1	0	Median	0.82363	0.80418	NaN	1	0	Median	2566500000	1172200000	1394300000	1094500000	442350000	652160000	1044500000	507170000	537290000	299830000	150300000	149540000	127690000	72411000	55277000	25364	1372	24031	158863;158864;158865;158866;158867;158868;158869;158870;158871;158872	214962;214963;214964;214965;214966;214967;214968;214969;214970;214971;214972;214973;214974;214975	214963			14	
IMGVAGGLTNLSK	1	Unmodified	1259.6908	0.69075746	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	61.094	60.24	2	0.00010419	50399	160511_QHF_FH_JSI10i_3	92.538	63.065			1.058	1.0097	14.06	6	1	Median	1.1471	0.9432	9.932	2	0	Median	1.0378	1.2138	3.875	2	1	Median	1.0608	1.0076	NaN	1	0	Median	0.88191	0.90216	NaN	1	0	Median	1026400000	525270000	501120000	154480000	63626000	90856000	224960000	109050000	115900000	250930000	138970000	111960000	396010000	213620000	182390000	25365	3803	24032	158873;158874;158875;158876;158877;158878	214976;214977;214978;214979;214980;214981;214982;214983;214984	214978			8	
IMGVLTHLDSFK	1	Unmodified	1359.7221	0.72205759	2566	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	1	2	2	71.354	70.542	2;3	5.1803E-05	60928	160511_QHF_FH_JSI12i_3	93.623	86.584			0.73265	0.61903	198.75	7	7	Median	0.73265	0.61903	179.47	3	3	Median	0.21418	0.25222	NaN	1	1	Median	12.375	11.737	NaN	1	1	Median	1.457	1.4694	309.46	2	2	Median	178090000	98149000	79943000	41496000	18934000	22562000	17101000	14908000	2193400	50694000	27051000	23643000	68801000	37256000	31545000	25366	2566	24033	158879;158880;158881;158882;158883;158884;158885;158886	214985;214986;214987;214988;214989;214990;214991;214992	214991			8	
IMHDVIKK	2	Unmodified	982.56337	0.5633721	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	12.621	12.155	3	0.0042402	9908	160511_QHF_FH_JSI10i_3	43.083	37.302			0.51846	0.48431	147.21	5	4	Median	11.691	9.5239	NaN	1	1	Median	1.0549	1.2356	165.54	2	1	Median	0.51846	0.48431	NaN	1	1	Median	0.47305	0.48234	NaN	1	1	Median	502810000	261610000	241200000	56547000	5450000	51097000	122740000	66339000	56399000	79173000	47932000	31240000	244350000	141890000	102460000	25367	1962	24034	158887;158888;158889;158890;158891	214993;214994;214995;214996;214997	214994			5	
IMHDVIKK	2	Acetyl (K)	1024.5739	0.57393679	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	30.829	21.79	3	0.0094472	12502	160513_QHF_FH_JSI11Kac_6	56.432	41.281			4.5847	0.55819	246.99	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56751	0.55819	299.36	2	2	Median	4.5847	5.0595	NaN	1	1	Median	10187000	5481000	4706100	0	0	0	0	0	0	8932800	5420900	3511900	1254400	60176	1194200	25368	1962	24034	158892;158893;158894	214998;214999;215000	214999	1984		3	
IMHFPTWVDLK	1	Unmodified	1385.7166	0.71657828	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	4.48		4	22						4	14	8	5	3	83.35	81.297	2;3	5.2044E-10	72896	160511_QHF_FH_JSI11i_3	121.9	113.2			1.046	0.94774	20.115	27	5	Median	1.1771	1.0007	22.324	14	2	Median	0.80723	0.92568	15.434	6	2	Median	0.94892	0.8959	19.451	4	0	Median	0.92937	0.94549	13.611	3	1	Median	1972600000	960800000	1011800000	398230000	189290000	208940000	267070000	137200000	129870000	575720000	274520000	301200000	731620000	359790000	371830000	25369	3828	24035	158895;158896;158897;158898;158899;158900;158901;158902;158903;158904;158905;158906;158907;158908;158909;158910;158911;158912;158913;158914;158915;158916;158917;158918;158919;158920;158921;158922;158923;158924	215001;215002;215003;215004;215005;215006;215007;215008;215009;215010;215011;215012;215013;215014;215015;215016;215017;215018;215019;215020;215021;215022;215023;215024;215025;215026;215027;215028;215029;215030;215031;215032;215033;215034;215035;215036;215037;215038;215039;215040;215041;215042;215043;215044;215045;215046;215047;215048	215004			45	
IMHFPTWVDLK	1	Oxidation (M)	1401.7115	0.7114929	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	70.633	69.552	3	0.00036824	59697	160511_QHF_FH_JSI12i_3	64.439	54.367			1.1229	1.1139	3.5876	3	0	Median	1.3872	1.1139	NaN	1	0	Median	0.89911	1.0561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1229	1.1308	NaN	1	0	Median	132920000	57940000	74979000	24708000	10893000	13815000	26837000	9166900	17670000	0	0	0	81374000	37880000	43494000	25370	3828	24035	158925;158926;158927;158928	215049;215050;215051;215052	215052		2298	4	
IMHPVSGK	1	Unmodified	867.46366	0.46365805	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		8.9315	8.4886	2;3	0.010571	6244	160511_QHF_FH_JSI10i_3	40.021	32.081			0.7185	0.72296	52.862	4	1	Linear	2.0903	1.7085	42.323	2	1	Median	0.83352	0.97673	NaN	1	0	Median	0.7108	0.65312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	842050000	448170000	393880000	266850000	99353000	167490000	217740000	140670000	77064000	357470000	208140000	149320000	0	0	0	25371	4494	24036	158929;158930;158931;158932	215053;215054;215055;215056;215057	215053			5	
IMIHQPSGGAR	0	Unmodified	1165.6026	0.60261115	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	9.5	6.5			3						3	2	3		1	22.602	18.055	2;3	0.0011282	10685	160513_QHF_FH_JSI10Kac_6	53.211	50.272			1.0653	1.0234	12.275	6	0	Median	1.2152	0.99951	4.4963	2	0	Median	0.82051	0.96069	16.031	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0446	1.1954	NaN	1	0	Median	428580000	233500000	195080000	93333000	44493000	48841000	332590000	187680000	144910000	0	0	0	2653400	1327800	1325600	25372	2759	24037	158933;158934;158935;158936;158937;158938	215058;215059;215060;215061;215062	215062			3	
IMIMTDQDQDGSHIK	1	Unmodified	1730.7968	0.79675545	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	1	3	3	42.015	41.237	2;3	7.1753E-41	35316	160511_QHF_FH_JSI11i_2	196.74	174.83			0.99885	1.0312	25	6	1	Median	0.91624	0.78368	NaN	1	0	Median	0.71911	0.87479	NaN	1	0	Median	1.252	1.264	22.471	3	1	Median	0.96303	1.068	NaN	1	0	Median	899140000	437310000	461830000	137530000	71176000	66350000	160520000	84925000	75591000	395810000	185090000	210720000	205290000	96123000	109170000	25373	999;2197	24038	158939;158940;158941;158942;158943;158944;158945;158946	215063;215064;215065;215066;215067;215068;215069;215070;215071;215072	215069			10	
IMKIDIEK	2	Unmodified	988.5627	0.5627034	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	31.028	30.95	3	0.02473	26153	160511_QHF_FH_JSI12i_3	41.029	0			9.8088	10.087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.8088	10.087	NaN	1	1	Median	23694000	1766500	21927000	0	0	0	0	0	0	0	0	0	23694000	1766500	21927000	25374	3212	24039	158947	215073	215073			1	
IMLDSSNLQHQK	1	Unmodified	1412.7082	0.70819844	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								2	1			33.229	32.219	3	6.9237E-05	28273	160511_QHF_FH_JSI10i_2	60.539	50.061			0.70417	0.85232	26.632	3	2	Median	0.79223	0.68144	31.644	2	2	Median	0.70417	0.87513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	252610000	155750000	96859000	164850000	99114000	65734000	87763000	56638000	31125000	0	0	0	0	0	0	25375	5523	24040	158948;158949;158950	215074;215075;215076;215077	215077			4	
IMLDSSNLQHQKIR	1	Acetyl (K)	1723.9039	0.90393813	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		58.238	48.515	3	0.00011246	26283	160513_QHF_FH_JSI11Kac_6	105.03	81.572			0.13009	0.12832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13009	0.12832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25033000	22340000	2693700	0	0	0	0	0	0	25033000	22340000	2693700	0	0	0	25376	5523	24041	158951	215078	215078	3469		1	
IMLFTGGPPTQGPGMVVGDELK	1	Unmodified	2243.133	0.13301137	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		98.539	98.374	3	4.0278E-05	89345	160511_QHF_FH_JSI11i_1	60.602	44.48			2.4149	2.311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4149	2.311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8972700	1400100	7572500	0	0	0	0	0	0	8972700	1400100	7572500	0	0	0	25377	2675	24042	158952	215079	215079			1	
IMLFTNEDNPHGNDSAK	1	Oxidation (M)	1917.8527	0.85269042	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	1	3	39.526	39.051	3	2.9004E-05	34084	160511_QHF_FH_JSI11i_3	79.805	73.961			1.0811	1.0254	30.899	5	1	Median	1.1917	1.0254	NaN	1	0	Median	0.68153	0.82083	NaN	1	0	Median	1.0811	1.0272	NaN	1	0	Median	1.1268	1.1484	55.382	2	1	Median	226970000	111900000	115070000	23724000	13427000	10297000	25896000	12447000	13449000	83513000	40480000	43033000	93842000	45549000	48293000	25378	1023	24043	158953;158954;158955;158956;158957;158958	215080;215081;215082;215083;215084;215085	215080		617	5	
IMLFTNEDNPHGNDSAK	1	Unmodified	1901.8578	0.8577758	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	3.53		2	8					1		3	1	2	5	46.637	44.597	2;3	2.1414E-74	39046	160511_QHF_FH_JSI11i_3	212.95	196.42			0.81962	0.9182	60.164	5	2	Median	2.0431	1.7087	NaN	1	0	Median	0.81962	0.9182	NaN	1	0	Median	2.4833	2.3526	NaN	1	1	Median	0.61841	0.65546	32.762	2	1	Median	579960000	353320000	226640000	4214600	1828000	2386600	22352000	9414700	12937000	26971000	6275600	20695000	526420000	335800000	190620000	25379	1023	24043	158959;158960;158961;158962;158963;158964;158965;158966;158967;158968;158969	215086;215087;215088;215089;215090;215091;215092;215093;215094;215095;215096;215097;215098;215099	215087			14	
IMLGDEAALLEQK	1	Unmodified	1429.7487	0.74866627	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.464	5	11								3	6	4	3	75.597	74.949	2;3	2.3915E-07	65787	160511_QHF_FH_JSI11i_2	89.301	77.381			1.2151	1.1592	33.187	13	7	Median	1.3377	1.1592	43.359	3	2	Median	0.78696	0.95024	31.644	5	3	Median	1.7556	1.6949	19.079	3	2	Median	0.84493	0.906	26.886	2	0	Median	511540000	238050000	273490000	72889000	33748000	39141000	234510000	111860000	122650000	136680000	59010000	77670000	67460000	33426000	34034000	25380	4487	24044	158970;158971;158972;158973;158974;158975;158976;158977;158978;158979;158980;158981;158982;158983;158984;158985	215100;215101;215102;215103;215104;215105;215106;215107;215108;215109;215110;215111;215112;215113;215114;215115;215116;215117;215118;215119;215120;215121	215117			22	
IMLLDEFTTK	1	Unmodified	1209.6315	0.63151124	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.549	82.813	2	0.0026778	73543	160511_QHF_FH_JSI10i_2	58.433	34.665			1.1671	1.204	9.5012	4	0	Median	1.1887	1.0063	NaN	1	0	Median	0.96282	1.1958	NaN	1	0	Median	1.2247	1.2123	NaN	1	0	Median	1.1459	1.2358	NaN	1	0	Median	170660000	85522000	85136000	40831000	20277000	20555000	41548000	22502000	19046000	44478000	24504000	19973000	43800000	18239000	25561000	25381	104	24045	158986;158987;158988;158989	215122;215123;215124;215125;215126;215127	215127			6	
IMLLNHPDK	1	Unmodified	1079.5798	0.57975044	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							2			1	32.629	32.069	2;3	0.0030732	27887	160511_QHF_FH_JSI9i_2	60.91	26.658			1.3316	1.2704	102.89	2	2	Median	0.71476	0.61376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4807	2.6298	NaN	1	1	Median	104240000	42926000	61317000	55786000	29360000	26427000	0	0	0	0	0	0	48457000	13567000	34891000	25382	4023	24046	158990;158991;158992	215128;215129;215130	215129			3	
IMLNEASGFEK	1	Unmodified	1237.6013	0.60127375	2210	Q03468;P0DP91	ERCC6	DNA excision repair protein ERCC-6	yes	no	0	0	0	0				By MS/MS	2	0		1											1	52.384	50.992	2	0.041589	43638	160511_QHF_FH_JSI12i_2	45.158	36.577			1.8289	2.0938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8289	2.0938	NaN	1	1	Median	35462000	14825000	20637000	0	0	0	0	0	0	0	0	0	35462000	14825000	20637000	25383	2210	24047	158993	215131	215131			1	
IMLNTPEDVQALVSGK	1	Oxidation (M)	1729.892	0.89203604	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		82.994	82.543	2	0.00010219	74863	160511_QHF_FH_JSI10i_1	90.731	57.506			1.3093	1.2862	15.645	3	1	Plateau	1.3093	1.0472	NaN	1	1	Median	0.99314	1.1616	NaN	1	0	Median	1.4703	1.4242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47330000	22452000	24878000	11902000	5252400	6649700	16775000	8449500	8325800	18652000	8750200	9902300	0	0	0	25384	109	24048	158994;158995;158996	215132;215133;215134;215135;215136	215133		47	5	
IMLNTPEDVQALVSGK	1	Unmodified	1713.8971	0.89712142	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	8	7								4	4	4	3	87.32	86.801	2;3	7.5795E-52	79053	160511_QHF_FH_JSI11i_1	216.84	181.33			1.0083	1.0157	6.2559	14	0	Median	1.2211	0.9873	7.696	4	0	Median	0.9501	1.0751	2.9881	3	0	Plateau	1.0172	1.0078	2.9238	4	0	Median	0.95144	0.99192	8.2098	3	0	Median	1302900000	660850000	642080000	281630000	118630000	163000000	317930000	183560000	134370000	438410000	230880000	207530000	264960000	127780000	137180000	25385	109	24048	158997;158998;158999;159000;159001;159002;159003;159004;159005;159006;159007;159008;159009;159010;159011	215137;215138;215139;215140;215141;215142;215143;215144;215145;215146;215147;215148;215149;215150;215151;215152;215153;215154;215155;215156;215157;215158;215159;215160;215161	215137			25	
IMLPGVLR	0	Unmodified	897.54699	0.54699375	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		68.591	67.553	2	0.0035175	55353	160511_QHF_FH_JSI9i_3	71.949	60.228			1.0977	0.99815	9.312	2	0	Median	1.1437	0.93454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0536	1.0661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141940000	72532000	69405000	114590000	57638000	56947000	0	0	0	27352000	14893000	12458000	0	0	0	25386	453	24049	159012;159013	215162;215163;215164	215162			3	
IMLPWDPTGK	1	Unmodified	1156.5951	0.59506616	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.25	4	4	4					3		4	4	3	4	82.64	80.042	2	2.3731E-14	74433	160511_QHF_FH_JSI11i_1	164.57	147.18			1.079	1.0557	10.396	15	0	Median	1.2036	0.98766	8.4916	4	0	Median	0.84401	1.0059	17.831	4	0	Median	1.079	1.0972	6.4666	3	0	Median	1.0256	1.0998	2.7459	4	0	Median	10664000000	4758400000	5906000000	1597000000	718660000	878380000	3233700000	1541000000	1692700000	3375700000	1380500000	1995200000	2458000000	1118200000	1339700000	25387	1227	24050	159014;159015;159016;159017;159018;159019;159020;159021;159022;159023;159024;159025;159026;159027;159028	215165;215166;215167;215168;215169;215170;215171;215172;215173;215174;215175;215176;215177;215178;215179;215180;215181;215182;215183;215184;215185;215186;215187;215188;215189;215190;215191;215192;215193;215194;215195;215196;215197;215198	215168			34	
IMLPWDPTGK	1	Oxidation (M)	1172.59	0.58998078	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	5.2		1						4		1	1	1	2	79.97	71.352	2	0.0068952	65269	160511_QHF_FH_JSI12i_2	76.465	64.617			1.1091	1.1037	36.01	5	1	Median	1.2978	1.1037	NaN	1	0	Median	1.1091	1.3136	NaN	1	0	Median	1.4362	1.4199	NaN	1	0	Median	0.62443	0.69528	21.792	2	1	Median	287390000	198160000	89233000	6532200	2939700	3592500	3601000	1925700	1675300	3981400	1384100	2597200	273280000	191910000	81368000	25388	1227	24050	159029;159030;159031;159032;159033	215199;215200;215201;215202;215203;215204	215199		863	6	
IMLVEPPVAK	1	Unmodified	1095.6362	0.63620269	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.945	61.637	2	0.025661	52925	160511_QHF_FH_JSI12i_2	40.724	33.829			0.81571	0.8826	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81571	0.8826	NaN	1	0	Median	25648000	13186000	12462000	0	0	0	0	0	0	0	0	0	25648000	13186000	12462000	25389	1141	24051	159034	215205	215205			1	
IMMEFER	0	Unmodified	954.43031	0.43030902	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.36	46.378	2	0.022321	39749	160511_QHF_FH_JSI12i_2	56.122	35.567			0.97749	1.0606	3.5792	4	0	Median	1.2505	1.0672	NaN	1	0	Median	0.90664	1.1	NaN	1	0	Median	1.0012	1.0091	NaN	1	0	Median	0.95432	1.0541	NaN	1	0	Median	1006700000	493110000	513590000	174210000	73596000	100610000	242980000	120900000	122090000	369790000	190220000	179570000	219720000	108400000	111320000	25390	348	24052	159035;159036;159037;159038	215206;215207;215208;215209	215206			4	
IMMFIGGPATQGPGMVVGDELK	1	Unmodified	2247.1102	0.11016744	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.183	81.822	3	0.00086476	45946	160513_QHF_FH_JSI11Kac_6	51.526	35.22			1.5241	1.4778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5241	1.4778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45637000	15781000	29855000	0	0	0	0	0	0	45637000	15781000	29855000	0	0	0	25391	2674	24053	159039	215210	215210			1	
IMMLSVLK	1	Unmodified	933.53913	0.53913118	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	75.967	72.629	2	0.0020973	38902	160513_QHF_FH_JSI10Kac_6	75.854	37.616			1.0077	1.0299	17.599	12	1	Median	1.1135	0.89881	15.312	3	0	Median	0.88319	1.0215	3.4844	3	1	Plateau	1.0463	0.98526	15.443	3	0	Median	1.2044	1.2379	27.683	3	0	Median	1592400000	770030000	822380000	349120000	152460000	196660000	464960000	245820000	219140000	408270000	186200000	222070000	370060000	185550000	184500000	25392	5135	24054	159040;159041;159042;159043;159044;159045;159046;159047;159048;159049;159050;159051;159052	215211;215212;215213;215214;215215;215216;215217;215218;215219;215220;215221;215222;215223;215224;215225;215226;215227;215228	215228			18	
IMMLSVLR	0	Unmodified	961.54528	0.54527919	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			32.261	30.881	3	0.052046	25776	160511_QHF_FH_JSI10i_3	21.3	5.1462			0.42695	0.50353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42695	0.50353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26617000	13865000	12752000	0	0	0	26617000	13865000	12752000	0	0	0	0	0	0	25393	5134	24055	159053	215229	215229			1	
IMMQVHGSK	1	Unmodified	1029.51	0.50995632	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							2	3	4	4	16.516	16.148	2;3	0.00092755	12646	160511_QHF_FH_JSI12i_3	83.168	45.522			2.2312	2.0902	45.396	11	11	Median	2.4392	1.9843	48.379	2	2	Median	3.7852	4.3672	29.676	2	2	Median	1.5752	1.4592	20.222	3	3	Plateau	1.5096	1.5306	41.769	4	4	Linear	4665700000	1735800000	2929900000	544290000	190200000	354090000	598220000	177130000	421090000	1157600000	464650000	692920000	2365600000	903820000	1461800000	25394	3071	24056	159054;159055;159056;159057;159058;159059;159060;159061;159062;159063;159064;159065;159066	215230;215231;215232;215233;215234;215235;215236;215237;215238;215239;215240;215241;215242	215239			13	
IMNEEDPEK	1	Unmodified	1103.4805	0.48048991	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.544	14.303	2	0.019265	11837	160511_QHF_FH_JSI10i_1	50.805	32.48			0.70983	0.81771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70983	0.81771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116420000	71944000	44480000	0	0	0	116420000	71944000	44480000	0	0	0	0	0	0	25395	3959	24057	159067	215243	215243			1	
IMNLYQFIQLYK	1	Unmodified	1572.8374	0.83742169	3780	Q8WVD5	RNF141	RING finger protein 141	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	95.451	87.058	2	4.2783E-20	46964	160513_QHF_FH_JSI12Kac_6	160.59	134.54			0.86383	0.88603	19.865	4	0	Median	0.80412	0.68885	NaN	1	0	Median	0.88404	1.0581	NaN	1	0	Median	0.84409	0.79249	NaN	1	0	Median	0.92841	0.99063	NaN	1	0	Median	283730000	156290000	127440000	54894000	27242000	27652000	96591000	51585000	45006000	77113000	43931000	33181000	55137000	33532000	21605000	25396	3780	24058	159068;159069;159070;159071	215244;215245;215246;215247	215245			4	
IMNMEAGTLAK	1	Unmodified	1177.5835	0.58351519	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		43.5	42.775	2	0.020724	36689	160511_QHF_FH_JSI11i_2	49.3	38.149			0.74423	0.82016	41.729	2	2	Median	NaN	NaN	NaN	0	0	Median	0.49965	0.61059	NaN	1	1	Median	1.1085	1.1016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75751000	44459000	31292000	0	0	0	32352000	19397000	12956000	43398000	25062000	18337000	0	0	0	25397	4007	24059	159072;159073	215248;215249	215248			2	
IMNSDENK	1	Unmodified	949.4175	0.41749572	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.0655	5.7195	2	0.012376	3741	160511_QHF_FH_JSI12i_1	52.716	5.8806			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25398	1251	24060	159074	215250	215250			1	
IMNTFSVMPSPK	1	Unmodified	1350.6676	0.66757917	2477;4440	Q13885;Q9BVA1;Q9BUF5	TUBB2A;TUBB2B;TUBB6	Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.718	6	9	4							4	6	6	3	63.782	63.04	2;3	7.8512E-11	55789	160511_QHF_FH_JSI10i_2	147.37	139.72			0.93427	0.99895	68.137	19	6	Median	1.2431	1.0437	44.273	4	1	Median	0.85476	1.0399	17.791	6	2	Median	0.91677	5.9769	118.53	6	2	Linear	0.8893	0.98864	37.344	3	1	Median	2926500000	1349500000	1577000000	439680000	191480000	248210000	732580000	372840000	359740000	1173100000	469730000	703400000	581070000	315410000	265660000	25399	2477;4440	24061	159075;159076;159077;159078;159079;159080;159081;159082;159083;159084;159085;159086;159087;159088;159089;159090;159091;159092;159093	215251;215252;215253;215254;215255;215256;215257;215258;215259;215260;215261;215262;215263;215264;215265;215266;215267;215268;215269;215270;215271;215272;215273;215274;215275;215276;215277	215273			27	
IMNTFSVVPSPK	1	Unmodified	1318.6955	0.69550848	2075;872;811;2430	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.48	8	8	8			2	4	8	6	10	11	11	12	67.035	62.085	2;3	1.9396E-39	32754	160513_QHF_FH_JSI9Kac_6	194.17	159.41			0.9574	0.98623	10.407	44	0	Median	1.1329	0.91789	14.708	10	0	Median	0.83073	0.96955	8.1728	11	0	Median	1.0055	0.99446	7.3719	11	0	Median	0.93219	0.99701	7.3821	12	0	Median	57508000000	26924000000	30584000000	10043000000	4539300000	5504100000	14801000000	7120700000	7680500000	19317000000	8742100000	10575000000	13347000000	6522400000	6824300000	25400	872;2075;811;2430	24062	159094;159095;159096;159097;159098;159099;159100;159101;159102;159103;159104;159105;159106;159107;159108;159109;159110;159111;159112;159113;159114;159115;159116;159117;159118;159119;159120;159121;159122;159123;159124;159125;159126;159127;159128;159129;159130;159131;159132;159133;159134;159135;159136;159137	215278;215279;215280;215281;215282;215283;215284;215285;215286;215287;215288;215289;215290;215291;215292;215293;215294;215295;215296;215297;215298;215299;215300;215301;215302;215303;215304;215305;215306;215307;215308;215309;215310;215311;215312;215313;215314;215315;215316;215317;215318;215319;215320;215321;215322;215323;215324;215325;215326;215327;215328;215329;215330;215331;215332;215333;215334;215335;215336;215337;215338;215339;215340;215341;215342;215343;215344;215345;215346;215347;215348;215349;215350;215351;215352;215353;215354;215355;215356;215357;215358;215359;215360;215361;215362;215363;215364;215365;215366;215367;215368;215369;215370;215371;215372;215373;215374;215375;215376;215377;215378;215379;215380;215381;215382;215383;215384;215385;215386;215387;215388;215389	215380			112	
IMNTFSVVPSPK	1	Oxidation (M)	1334.6904	0.69042311	2075;872;811;2430	P07437;P68371;P04350;Q13509	TUBB;TUBB4B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.5	10	11	4			1	6	10	3	12	10	12	11	58.635	53.627	2;3	2.6092E-24	28223	160513_QHF_FH_JSI9Kac_5	169.58	136.35			0.93145	0.9021	17.341	42	13	Plateau	1.1359	0.96296	21.001	10	4	Median	0.75342	0.89678	17.957	10	3	Median	1.0012	0.96712	12.793	11	3	Median	0.93351	1.0272	17.211	11	3	Median	7954700000	4293200000	3661500000	1592400000	765830000	826580000	1949100000	1156400000	792700000	2795500000	1508900000	1286600000	1617700000	862110000	755540000	25401	872;2075;811;2430	24062	159138;159139;159140;159141;159142;159143;159144;159145;159146;159147;159148;159149;159150;159151;159152;159153;159154;159155;159156;159157;159158;159159;159160;159161;159162;159163;159164;159165;159166;159167;159168;159169;159170;159171;159172;159173;159174;159175;159176;159177;159178;159179;159180;159181;159182	215390;215391;215392;215393;215394;215395;215396;215397;215398;215399;215400;215401;215402;215403;215404;215405;215406;215407;215408;215409;215410;215411;215412;215413;215414;215415;215416;215417;215418;215419;215420;215421;215422;215423;215424;215425;215426;215427;215428;215429;215430;215431;215432;215433;215434;215435;215436;215437;215438;215439;215440;215441;215442;215443;215444;215445;215446;215447;215448;215449;215450;215451;215452;215453;215454;215455;215456;215457;215458;215459;215460;215461;215462;215463;215464;215465	215412		324	75	
IMNVIGEPIDER	0	Unmodified	1384.7021	0.70205043	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.43	4	4	3				1			3	2	3	4	59.733	58.168	2	9.879E-11	52527	160511_QHF_FH_JSI10i_1	176.65	158.11			0.99685	1.0761	21.92	12	3	Median	1.5071	1.1478	8.2499	3	2	Plateau	0.99685	1.203	1.6719	2	0	Median	0.93876	0.87028	16.021	3	1	Median	0.80531	0.87781	25.725	4	0	Median	6135700000	2940600000	3195200000	1207800000	459770000	747990000	1346800000	677350000	669420000	1920900000	892260000	1028600000	1660300000	911180000	749160000	25402	851	24063	159183;159184;159185;159186;159187;159188;159189;159190;159191;159192;159193;159194	215466;215467;215468;215469;215470;215471;215472;215473;215474;215475;215476;215477;215478;215479;215480;215481;215482	215473			16	
IMNVIGEPIDER	0	Oxidation (M)	1400.697	0.69696505	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			48.656	48.232	2	0.0092426	43441	160511_QHF_FH_JSI10i_1	57.174	36.175			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25403	851	24063	159195	215483	215483		371	1	
IMNVIGEPIDERGPIK	1	Oxidation (M)	1795.9502	0.95021962	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	54.221	53.835	2;3	1.6123E-05	46141	160511_QHF_FH_JSI12i_3	116.86	116.86			1.1334	1.1595	5.9181	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84754	1.0326	NaN	1	0	Median	1.1657	1.1172	NaN	1	0	Median	1.1334	1.1595	NaN	1	0	Median	891210000	402440000	488780000	0	0	0	193880000	100860000	93028000	301380000	118790000	182580000	395950000	182790000	213170000	25404	851	24064	159196;159197;159198;159199;159200;159201	215484;215485;215486;215487;215488;215489;215490;215491;215492;215493;215494;215495	215492		371	12	
IMNVIGEPIDERGPIK	1	Unmodified	1779.9553	0.955305	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.86	2	8	6					4	2	4	4	8	6	64.993	61.654	2;3	2.8608E-21	54193	160511_QHF_FH_JSI9i_2	180.18	151.42			1.0623	1.0211	17.87	22	2	Median	1.1889	0.98755	2.968	4	0	Median	0.82354	0.99327	14.439	4	0	Median	1.0886	1.0603	26.941	8	2	Median	0.99024	1.1	12.799	6	0	Median	18200000000	8844200000	9356100000	2578800000	1096400000	1482400000	3198200000	1828900000	1369300000	6829000000	3038300000	3790700000	5594300000	2880500000	2713800000	25405	851	24064	159202;159203;159204;159205;159206;159207;159208;159209;159210;159211;159212;159213;159214;159215;159216;159217;159218;159219;159220;159221;159222;159223	215496;215497;215498;215499;215500;215501;215502;215503;215504;215505;215506;215507;215508;215509;215510;215511;215512;215513;215514;215515;215516;215517;215518;215519;215520;215521;215522;215523;215524;215525;215526;215527;215528;215529;215530;215531;215532;215533;215534;215535;215536	215519			41	
IMPDSNDSPPAEREPGEVVDSLVGK	1	Unmodified	2637.2592	0.25921075	5703	Q9Y657	SPIN1	Spindlin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	74.399	73.907	3	5.8545E-05	65934	160511_QHF_FH_JSI11i_3	50.029	42.836			1.0464	1.116	17.444	5	1	Median	1.0464	0.89597	NaN	1	0	Median	0.94038	1.1653	NaN	1	0	Median	1.0556	1.0473	8.9859	2	1	Median	1.4002	1.415	NaN	1	0	Median	203290000	101670000	101620000	49245000	28270000	20975000	27591000	18542000	9049200	91077000	40580000	50497000	35377000	14281000	21096000	25406	5703	24065	159224;159225;159226;159227;159228	215537;215538;215539;215540;215541	215537			5	
IMPEDIIINCSK	1	Unmodified	1431.7102	0.71017227	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		71.459	71.111	2	0.0030424	64628	160511_QHF_FH_JSI11i_1	67.776	42.559			0.38125	0.37574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38125	0.37574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27705000	19674000	8031100	0	0	0	0	0	0	27705000	19674000	8031100	0	0	0	25407	998	24066	159229	215542	215542			1	
IMPHTEAR	0	Unmodified	953.47529	0.47528537	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2.33	0.471		2	1								1	1	1	9.9151	9.7149	3	0.01262	7000	160511_QHF_FH_JSI12i_3	36.506	25.437			1.0748	1.0383	19.671	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75487	0.89381	NaN	1	0	Median	1.0748	1.0383	NaN	1	0	Median	1.2782	1.3201	NaN	1	0	Median	266340000	133420000	132930000	0	0	0	50241000	28483000	21758000	14525000	6297400	8227400	201580000	98635000	102940000	25408	4007	24067	159230;159231;159232	215543	215543			1	
IMPIQHTLSVQSASSTVK	1	Unmodified	1926.0244	0.024447197	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	53.883	53.042	3	5.0788E-24	46873	160511_QHF_FH_JSI11i_3	181.72	156.4			0.96095	0.94618	12.332	4	1	Median	0.97345	0.79842	NaN	1	1	Median	0.93357	1.0681	NaN	1	0	Median	0.98235	0.91203	NaN	1	0	Median	0.94861	0.98161	NaN	1	0	Median	304030000	157090000	146940000	22931000	10243000	12688000	47584000	25430000	22154000	88952000	43328000	45623000	144570000	78092000	66473000	25409	3419	24068	159233;159234;159235;159236	215544;215545;215546;215547;215548	215544			5	
IMPLEDMNEFTTHILEVINAHMVLSK	1	Unmodified	3024.5123	0.51227109	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	99.605	91.171	4	1.4162E-94	49728	160513_QHF_FH_JSI12Kac_6	227.24	211.12			0.88244	0.89856	64.103	4	0	Median	1.0788	0.9359	NaN	1	0	Median	0.72183	0.8627	NaN	1	0	Median	0.30563	0.29113	NaN	1	0	Median	1.1892	1.2607	NaN	1	0	Median	1213200000	640280000	572900000	247040000	122780000	124260000	606930000	342420000	264510000	47907000	36081000	11826000	311300000	139000000	172310000	25410	1086	24069	159237;159238;159239;159240	215549;215550;215551;215552;215553	215552			5	
IMQDFESDTFFPEIDLEK	1	Unmodified	2203.0031	0.003102632	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.31	101.28	3	0.00018392	91983	160511_QHF_FH_JSI10i_1	70.094	62.406			0.94205	1.1161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94205	1.1161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111340000	57221000	54116000	0	0	0	111340000	57221000	54116000	0	0	0	0	0	0	25411	763	24070	159241	215554	215554			1	
IMQEEGQPLK	1	Unmodified	1171.5907	0.59070906	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	23.953	23.633	2	0.0019904	20813	160511_QHF_FH_JSI12i_1	62.558	34.675			0.52759	0.56702	8.7921	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52734	0.61429	NaN	1	0	Median	0.52759	0.51535	NaN	1	0	Median	0.53826	0.56702	NaN	1	0	Median	722450000	485260000	237200000	0	0	0	240420000	152830000	87591000	257180000	183440000	73740000	224850000	148990000	75866000	25412	3959	24071	159242;159243;159244	215555	215555			1	
IMQEEGQPLK	1	Oxidation (M)	1187.5856	0.58562368	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			23.89	23.606	2	0.020605	20695	160511_QHF_FH_JSI10i_1	43.635	21.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42946000	23215000	19730000	0	0	0	42946000	23215000	19730000	0	0	0	0	0	0	25413	3959	24071	159245	215556	215556		2365	1	
IMQFLSIVNTMFATINR	0	Unmodified	1998.0431	0.043074149	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.33	94.605	2;3	2.0753E-31	55701	160513_QHF_FH_JSI10Kac_6	224.42	183.71			0.20767	0.24453	76.028	2	2	Median	NaN	NaN	NaN	0	0	Median	0.20767	0.24453	76.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101050000	85235000	15812000	0	0	0	101050000	85235000	15812000	0	0	0	0	0	0	25414	4205	24072	159246;159247;159248	215557;215558;215559	215558			3	
IMQIHSR	0	Unmodified	883.46981	0.46980607	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			10.925	10.253	2;3	0.00081344	7827	160511_QHF_FH_JSI9i_3	104.45	31.409			0.96168	0.91856	3.6864	4	0	Median	1.1558	0.91856	1.6526	2	0	Median	0.78835	0.90314	5.9304	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1051900000	490110000	561830000	603840000	257720000	346120000	448100000	232380000	215720000	0	0	0	0	0	0	25415	1131	24073	159249;159250;159251;159252	215560;215561;215562;215563;215564;215565	215564			6	
IMQNTDPHSQEYVEHLK	1	Unmodified	2067.9684	0.96838888	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	3	5	4	35.418	34.729	3;4	1.2474E-16	30378	160511_QHF_FH_JSI10i_2	166.35	146.26			1.0676	1.1093	41.21	14	3	Median	1.409	1.1967	0.69137	2	0	Median	0.90837	1.1024	19.699	3	0	Plateau	1.5719	1.6019	61.259	5	2	Median	0.89429	0.94359	31.718	4	1	Median	4471900000	2287700000	2184200000	730060000	266690000	463370000	988940000	536170000	452770000	1682600000	941890000	740700000	1070300000	542940000	527390000	25416	40	24074	159253;159254;159255;159256;159257;159258;159259;159260;159261;159262;159263;159264;159265;159266	215566;215567;215568;215569;215570;215571;215572;215573;215574;215575;215576;215577;215578;215579;215580;215581;215582;215583;215584;215585;215586;215587;215588;215589;215590;215591;215592	215584			27	
IMQNTDPHSQEYVEHLK	1	Oxidation (M)	2083.9633	0.9633035	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	1	0				By MS/MS	3	0			1										1	29.62	29.566	4	0.00019277	24864	160511_QHF_FH_JSI12i_3	71.685	62.155			1.3048	1.3036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3048	1.3036	NaN	1	1	Median	92262000	39236000	53026000	0	0	0	0	0	0	0	0	0	92262000	39236000	53026000	25417	40	24074	159267	215593	215593		10	1	
IMQQETSVPTLK	1	Unmodified	1373.7225	0.72245152	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	44.03	43.255	2	6.7073E-06	39336	160511_QHF_FH_JSI12i_1	121.61	88.998			0.98837	1.0315	50.693	5	1	Median	0.88208	0.72949	94.055	2	1	Median	0.64775	0.75394	NaN	1	0	Median	1.0693	1.0502	NaN	1	0	Median	0.98837	1.0315	NaN	1	0	Median	584370000	316620000	267760000	160080000	79339000	80738000	138000000	95219000	42781000	120860000	60311000	60550000	165440000	81748000	83689000	25418	3264	24075	159268;159269;159270;159271;159272	215594;215595;215596;215597;215598;215599;215600;215601	215596			7	
IMQSSSEVGYDAMAGDFVNMVEK	1	Unmodified	2507.1018	0.10184717	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	10	8	4							5	6	6	5	98.509	98.339	2;3	3.6728E-300	89303	160511_QHF_FH_JSI12i_1	372.53	355.45			0.97465	0.94092	21.998	20	4	Median	1.0821	0.89302	7.6871	5	1	Median	0.73114	0.88171	30.151	6	2	Median	0.97705	0.99265	29.096	5	1	Median	0.94763	1.0329	10.315	4	0	Median	10327000000	5000800000	5326300000	1394600000	621030000	773560000	2873100000	1485200000	1387900000	2735500000	1369100000	1366400000	3323800000	1525400000	1798400000	25419	980	24076	159273;159274;159275;159276;159277;159278;159279;159280;159281;159282;159283;159284;159285;159286;159287;159288;159289;159290;159291;159292;159293;159294	215602;215603;215604;215605;215606;215607;215608;215609;215610;215611;215612;215613;215614;215615;215616;215617;215618;215619;215620;215621;215622;215623;215624;215625;215626;215627;215628;215629;215630;215631;215632;215633;215634;215635;215636;215637;215638;215639;215640;215641;215642;215643;215644;215645;215646;215647;215648;215649;215650;215651;215652;215653;215654;215655;215656;215657;215658;215659	215622			58	
IMQSSSEVGYDAMAGDFVNMVEK	1	Oxidation (M)	2523.0968	0.096761796	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.09	0.282	21	2								4	8	4	7	88.928	88.598	2;3	1.9975E-86	86024	160511_QHF_FH_JSI11i_1	239.72	227.57			0.97674	0.984	25.174	18	5	Median	1.1943	0.97315	7.3934	3	0	Median	0.76939	0.9002	39.837	6	3	Median	0.9877	0.97011	15.051	4	1	Median	0.98463	1.0762	19.692	5	1	Median	1519600000	803260000	716330000	227430000	113370000	114050000	490570000	283560000	207010000	365730000	194290000	171450000	435860000	212040000	223810000	25420	980	24076	159295;159296;159297;159298;159299;159300;159301;159302;159303;159304;159305;159306;159307;159308;159309;159310;159311;159312;159313;159314;159315;159316;159317	215660;215661;215662;215663;215664;215665;215666;215667;215668;215669;215670;215671;215672;215673;215674;215675;215676;215677;215678;215679;215680;215681;215682;215683;215684;215685;215686;215687;215688;215689;215690;215691;215692;215693;215694;215695	215662		552;553;554	36	
IMQTDEEIGK	1	Unmodified	1162.554	0.5539892	2582	Q14919	DRAP1	Dr1-associated corepressor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	25.585	24.913	2	0.0010217	21517	160511_QHF_FH_JSI9i_1	68.371	52.038			0.64467	0.68761	72.472	6	4	Median	1.4216	1.1737	135.76	2	1	Median	0.62143	0.72655	NaN	1	0	Median	0.66877	0.65076	NaN	1	1	Median	0.91723	0.93824	69.902	2	2	Median	775710000	437590000	338120000	200160000	97763000	102400000	140360000	83371000	56984000	169300000	103700000	65594000	265900000	152750000	113140000	25421	2582	24077	159318;159319;159320;159321;159322;159323	215696;215697;215698;215699;215700;215701;215702	215701			7	
IMQVNGWDMTMVTHDQAR	0	Unmodified	2131.9601	0.96014916	216	O14907	TAX1BP3	Tax1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	2	1	2	1	71.763	69.741	3	2.0292E-07	60596	160511_QHF_FH_JSI12i_2	113.47	100.06			0.98251	1.0614	25.537	6	0	Median	1.0658	0.91167	18.37	2	0	Median	0.99577	1.2392	NaN	1	0	Median	1.3191	1.2643	41.068	2	0	Median	0.96943	1.0853	NaN	1	0	Median	413780000	189160000	224620000	105800000	49791000	56009000	88494000	39238000	49256000	149230000	64202000	85029000	70251000	35926000	34325000	25422	216	24078	159324;159325;159326;159327;159328;159329	215703;215704;215705;215706;215707;215708	215704			4	
IMRDPDTGNSK	1	Unmodified	1232.5819	0.58193529	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		4	6							4	4	2		8.38	7.9614	2;3	4.8304E-12	5719	160511_QHF_FH_JSI11i_3	143.4	114.24			1.1519	1.0849	22.906	10	1	Median	1.3429	1.1082	7.898	4	0	Median	0.87767	1.0441	12.037	4	0	Median	1.5475	1.468	51.061	2	1	Median	NaN	NaN	NaN	0	0	Median	2950600000	1346500000	1604100000	1009500000	396610000	612860000	1199800000	655230000	544560000	741350000	294680000	446670000	0	0	0	25423	2671	24079	159330;159331;159332;159333;159334;159335;159336;159337;159338;159339	215709;215710;215711;215712;215713;215714;215715;215716;215717;215718;215719;215720;215721;215722;215723;215724;215725;215726	215709			18	
IMRDPDTGNSK	1	Oxidation (M)	1248.5768	0.57684991	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		6.3919	6.0522	2;3	0.0015957	3073	160511_QHF_FH_JSI10i_3	62.088	51.258			1.0583	0.99957	11.763	3	0	Median	1.4806	1.198	NaN	1	0	Median	0.81899	0.96082	NaN	1	0	Median	1.0583	0.99957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	416170000	210330000	205840000	180140000	74681000	105460000	213460000	124090000	89366000	22571000	11552000	11019000	0	0	0	25424	2671	24079	159340;159341;159342;159343	215727;215728;215729;215730;215731	215728		2093	5	
IMREPWVEQDK	1	Unmodified	1429.7024	0.70238478	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		4	6							3	4	3		37.54	36.61	2;3	1.8246E-05	29870	160511_QHF_FH_JSI9i_3	96.64	82.383			0.94545	0.98804	13.888	10	1	Median	1.5079	1.1934	16.46	3	0	Median	0.83639	0.987	3.476	4	0	Median	1.0063	0.76321	16.244	3	1	Plateau	NaN	NaN	NaN	0	0	Median	2969300000	1512400000	1456900000	1307600000	605720000	701840000	1018700000	571180000	447510000	643070000	335520000	307550000	0	0	0	25425	1395	24080	159344;159345;159346;159347;159348;159349;159350;159351;159352;159353	215732;215733;215734;215735;215736;215737;215738;215739;215740;215741;215742;215743;215744;215745;215746;215747;215748;215749;215750;215751;215752;215753;215754;215755;215756	215742			25	
IMREPWVEQDK	1	Oxidation (M)	1445.6973	0.6972994	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				37.979	36.506	3	0.00025229	29793	160511_QHF_FH_JSI9i_3	78.324	65.697			1.0067	0.79601	NaN	1	0	Median	1.0067	0.79601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30509000	11008000	19501000	30509000	11008000	19501000	0	0	0	0	0	0	0	0	0	25426	1395	24080	159354	215757	215757		1044	1	
IMREPWVEQDKFGK	2	Acetyl (K)	1803.8978	0.89779012	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		67.877	59.159	3	0.0045803	32406	160513_QHF_FH_JSI10Kac_6	60.918	52.742			0.69775	0.75331	82.562	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1403	1.3506	NaN	1	0	Median	0.42697	0.42018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48686000	26706000	21980000	0	0	0	23153000	9581500	13571000	25533000	17125000	8408300	0	0	0	25427	1395	24081	159355;159356	215758;215759	215759	1353		2	
IMRPDDANVAGNVHGGTILK	1	Unmodified	2077.0739	0.073857005	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							4	3	2	2	47.229	46.328	3;4	4.462E-33	40896	160511_QHF_FH_JSI11i_3	185.61	175.51			1.0831	1.0188	24.443	11	1	Median	1.2137	1.0087	18.885	4	0	Median	1.049	1.2882	17.691	3	0	Median	1.0475	0.99899	5.5184	2	0	Median	0.96656	0.97293	60.476	2	1	Median	3597100000	1768900000	1828200000	946970000	418980000	527990000	875130000	470440000	404690000	1506500000	738290000	768210000	268510000	141170000	127340000	25428	99	24082	159357;159358;159359;159360;159361;159362;159363;159364;159365;159366;159367	215760;215761;215762;215763;215764;215765;215766;215767;215768;215769;215770;215771;215772;215773;215774;215775;215776	215763			16	
IMRPDDANVAGNVHGGTILK	1	Oxidation (M)	2093.0688	0.068771627	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	1	1		By MS/MS			3	0			3								3			42.343	40.822	3;4	6.8371E-05	34014	160511_QHF_FH_JSI10i_3	67.251	59.099			0.78618	0.90422	46.883	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78618	0.90422	46.883	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142260000	78775000	63487000	0	0	0	142260000	78775000	63487000	0	0	0	0	0	0	25429	99	24082	159368;159369;159370	215777;215778;215779	215778		43	3	
IMSIVDPNR	0	Unmodified	1043.5434	0.54336494	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.695	41.229	2	0.016171	35381	160511_QHF_FH_JSI11i_2	53.775	34.992			1.3023	1.3357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3023	1.3357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	160910000	59766000	101140000	0	0	0	0	0	0	160910000	59766000	101140000	0	0	0	25430	1021	24083	159371	215780	215780			1	
IMSLVDPNHSGLVTFQAFIDFMSR	0	Oxidation (M)	2740.3353	0.335293	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.253	89.826	3	9.3281E-53	48830	160513_QHF_FH_JSI12Kac_6	186.28	171.35			0.91237	1.019	66.976	4	1	Median	0.58646	0.50186	NaN	1	0	Median	0.70877	0.83658	NaN	1	0	Median	2.571	2.4557	NaN	1	1	Median	1.1745	1.2411	NaN	1	0	Median	664160000	341380000	322780000	152890000	115370000	37522000	201570000	119680000	81895000	127640000	29750000	97895000	182050000	76585000	105470000	25431	361	24084	159372;159373;159374;159375	215781;215782;215783;215784	215783		139	4	
IMSLVDPNHSGLVTFQAFIDFMSR	0	Unmodified	2724.3404	0.34037838	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	99.012	91.508	3;4	4.0657E-111	51767	160513_QHF_FH_JSI9Kac_6	243.47	223.57			0.75519	0.79446	34.038	4	1	Median	0.83582	0.70144	NaN	1	0	Median	0.66723	0.79446	3.37	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4065	1.4886	NaN	1	0	Median	3338300000	2146900000	1191400000	982840000	511500000	471340000	2067500000	1535800000	531650000	0	0	0	287980000	99548000	188440000	25432	361	24084	159376;159377;159378;159379	215785;215786;215787;215788;215789	215786			5	
IMSLYYQYMETYMGPALFAITIEAMK	1	Unmodified	3077.4662	0.4662321	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.8	6.71		2	1						2	2	3			103.4	101.06	3	1.0821E-13	91848	160511_QHF_FH_JSI9i_2	102.07	95.494			1.1397	1.1502	20.595	4	4	Median	1.1626	1.0215	NaN	1	1	Median	1.1173	1.2952	22.277	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	260180000	120980000	139210000	14394000	4363000	10031000	245790000	116610000	129170000	0	0	0	0	0	0	25433	2585	24085	159380;159381;159382;159383;159384	215790;215791;215792;215793;215794	215791			5	
IMSSPLSK	1	Unmodified	861.46299	0.46298935	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.94	4	3	4					1	1	5	3	3	2	30.56	28.539	2	0.0061156	23778	160511_QHF_FH_JSI10i_3	63.565	29.827			1.1157	1.1522	27.555	13	0	Median	1.1157	0.90784	32.586	5	0	Median	0.95946	1.1522	40.281	3	0	Median	1.143	1.1702	24.756	3	0	Median	1.0094	1.0333	17.715	2	0	Median	12070000000	5708500000	6361800000	2615400000	1089000000	1526500000	3339900000	1805800000	1534100000	4791200000	2207100000	2584200000	1323800000	606710000	717050000	25434	1949;5450	24086	159385;159386;159387;159388;159389;159390;159391;159392;159393;159394;159395;159396;159397	215795;215796;215797;215798;215799;215800;215801;215802;215803;215804;215805;215806;215807;215808;215809;215810;215811	215800			17	
IMSSPLSK	1	Oxidation (M)	877.4579	0.45790397	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	8.33	6.37	1	1	1				1	2			1	2	3	22.437	16.589	2	0.0075584	25345	160511_QHF_FH_JSI11i_1	74.127	22.439			0.96161	1.0719	17.709	5	0	Median	NaN	NaN	NaN	0	0	Median	0.9323	1.0918	NaN	1	0	Median	1.0755	1.0706	NaN	1	0	Median	0.96161	1.0719	24.775	3	0	Median	165030000	86843000	78187000	0	0	0	5472300	2568000	2904300	8822800	4160700	4662100	150730000	80114000	70621000	25435	1949;5450	24086	159398;159399;159400;159401;159402;159403	215812;215813;215814	215812		1618	3	
IMSTPGGEEAIER	0	Unmodified	1388.6606	0.66057954	411	O60333	KIF1B	Kinesin-like protein KIF1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.932	34.632	2	0.00017561	30894	160511_QHF_FH_JSI10i_1	82.261	70.667			0.85177	0.90729	4.1399	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78527	0.93424	NaN	1	0	Median	0.9239	0.88111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82442000	42523000	39919000	0	0	0	43550000	23559000	19992000	38892000	18964000	19927000	0	0	0	25436	411	24087	159404;159405;159406	215815;215816;215817	215817			3	
IMTYLFDFPHGPK	1	Unmodified	1564.7748	0.77482144	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.65		5	4						6	5	3	4	3	82.317	78.493	3	8.1586E-06	39676	160513_QHF_FH_JSI9Kac_6	76.588	63.962			0.8481	0.939	30.881	15	4	Median	0.89131	0.72957	42.667	5	3	Median	0.81835	0.95789	6.6562	3	0	Median	0.96697	0.97197	38.315	4	1	Median	0.94893	0.97373	5.8939	3	0	Plateau	1214000000	630790000	583250000	286260000	139290000	146970000	226060000	121560000	104510000	324330000	158170000	166160000	377380000	211770000	165610000	25437	1690	24088	159407;159408;159409;159410;159411;159412;159413;159414;159415;159416;159417;159418;159419;159420;159421	215818;215819;215820;215821;215822;215823;215824;215825;215826;215827;215828;215829;215830;215831;215832;215833;215834;215835;215836;215837	215832			20	
IMVANIEEVLQR	0	Unmodified	1413.765	0.76498503	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.44	2	9	6						4	3	6	6	6	84.918	82.686	2;3	1.6485E-41	74658	160511_QHF_FH_JSI11i_2	199.67	175.45			0.9151	0.9745	22.245	18	1	Median	1.2536	1.0726	7.9014	3	0	Median	0.83093	1.0083	10.54	4	0	Median	1.0061	0.96577	17.736	6	0	Median	0.87142	0.92539	38.259	5	1	Median	3720800000	1967800000	1753000000	627480000	258890000	368590000	1121000000	651060000	469910000	1302300000	692220000	610100000	669990000	365610000	304380000	25438	520	24089	159422;159423;159424;159425;159426;159427;159428;159429;159430;159431;159432;159433;159434;159435;159436;159437;159438;159439;159440;159441;159442	215838;215839;215840;215841;215842;215843;215844;215845;215846;215847;215848;215849;215850;215851;215852;215853;215854;215855;215856;215857;215858;215859;215860;215861;215862;215863;215864;215865;215866;215867;215868;215869	215857			32	
IMVANIEEVLQR	0	Oxidation (M)	1429.7599	0.75989966	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	78.577	78.252	2	0.0011865	69852	160511_QHF_FH_JSI11i_3	91.584	72.804			1.1971	1.2254	29.185	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2511	1.5259	NaN	1	0	Median	0.91573	0.85598	NaN	1	1	Median	1.1971	1.2254	NaN	1	0	Median	132200000	58550000	73646000	0	0	0	35346000	15277000	20069000	50360000	22120000	28240000	46489000	21152000	25336000	25439	520	24089	159443;159444;159445	215870;215871	215870		193	2	
IMVANIEEVLQRGEALSALDSK	1	Unmodified	2385.2574	0.25736026	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	101.3	101.25	3	1.6319E-14	90314	160511_QHF_FH_JSI11i_3	122.3	110.84			1.141	1.0223	32.683	4	2	Median	1.3528	1.1364	NaN	1	0	Median	1.316	1.5031	NaN	1	1	Median	0.98921	0.91976	NaN	1	1	Median	0.68638	0.69446	NaN	1	0	Median	2498600000	1207700000	1290900000	553780000	236010000	317780000	501130000	183450000	317680000	804740000	435190000	369550000	638950000	353060000	285890000	25440	520	24090	159446;159447;159448;159449	215872;215873;215874;215875;215876	215872			5	
IMVANIEEVLQRGEALSALDSK	1	Oxidation (M)	2401.2523	0.25227488	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			101.06	100.89	3	1.3821E-09	83520	160511_QHF_FH_JSI10i_3	107.47	93.158			1.2265	1.3954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2265	1.3954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158490000	65253000	93241000	0	0	0	158490000	65253000	93241000	0	0	0	0	0	0	25441	520	24090	159450	215877	215877		193	1	
IMVDMLDSDGSGK	1	Unmodified	1366.6109	0.61085216	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.919	58.27	2	8.0691E-05	51647	160511_QHF_FH_JSI9i_1	98.898	91.253			1.0346	1.0134	10.879	4	0	Median	1.1544	0.9393	NaN	1	0	Median	0.87558	1.0397	NaN	1	0	Median	1.2421	1.2083	NaN	1	0	Median	0.92722	0.98783	NaN	1	0	Median	1399600000	679260000	720360000	288040000	118230000	169820000	414260000	211250000	203010000	356130000	159270000	196860000	341180000	190510000	150670000	25442	1122	24091	159451;159452;159453;159454	215878;215879	215879			1	
IMVSRSEVDMLK	1	Unmodified	1406.7262	0.72615669	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	51.768	51.169	2;3	0.036437	43838	160511_QHF_FH_JSI12i_3	72.434	28.125			0.13348	0.15279	102.33	3	3	Median	NaN	NaN	NaN	0	0	Median	0.13348	0.15279	NaN	1	1	Median	0.030853	0.028487	NaN	1	1	Median	0.18042	0.18164	NaN	1	1	Median	106600000	93160000	13445000	0	0	0	59937000	52694000	7243600	20312000	19576000	735960	26355000	20890000	5465400	25443	870	24092	159455;159456;159457	215880;215881;215882	215882			3	
IMVVGSTINDVLAVNTPK	1	Unmodified	1870.0234	0.023384564	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	1	2	91.926	91.505	2;3	3.5903E-16	79061	160511_QHF_FH_JSI12i_2	119.39	104.24			0.92149	0.84567	14.756	5	0	Median	0.92149	0.80526	NaN	1	0	Median	0.69339	0.81371	5.4479	2	0	Median	0.94744	0.94561	NaN	1	0	Median	1.0155	1.1239	NaN	1	0	Median	172410000	78455000	93956000	33519000	15144000	18375000	64144000	27923000	36221000	40893000	18723000	22170000	33855000	16664000	17190000	25444	175	24093	159458;159459;159460;159461;159462;159463;159464	215883;215884;215885;215886;215887;215888;215889;215890;215891	215884			9	
IMYDIFPFK	1	Unmodified	1172.594	0.59400353	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.568	94.171	2	0.0096373	83346	160511_QHF_FH_JSI10i_2	50.878	44.428			0.83731	0.87496	3.6964	4	0	Median	1.0095	0.87664	NaN	1	0	Median	0.79055	0.93271	NaN	1	0	Median	0.87577	0.87328	NaN	1	0	Median	0.80053	0.85643	NaN	1	0	Median	78732000	48827000	29905000	14994000	8878700	6114900	16073000	10323000	5750500	31432000	18955000	12476000	16234000	10670000	5563400	25445	5039	24094	159465;159466;159467;159468	215892;215893	215893			2	
IMYDIFPFKK	2	Unmodified	1300.689	0.68896654	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	78.264	77.71	3	0.0006046	69184	160511_QHF_FH_JSI11i_3	59.542	52.882			1.8758	1.8754	38.623	3	0	Plateau	1.0864	0.9093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7527	1.6492	NaN	1	0	Median	1.8758	1.8754	NaN	1	0	Median	79188000	34881000	44307000	14646000	7276800	7368900	0	0	0	22101000	10283000	11819000	42441000	17321000	25120000	25446	5039	24095	159469;159470;159471	215894;215895;215896	215894			3	
IMYDLTSKPPGTTEWE	1	Unmodified	1866.871	0.87096625	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								2	3	3	4	72.539	71.977	2;3	2.7586E-06	65619	160511_QHF_FH_JSI12i_1	140.14	124.51			1.0594	1.0485	15.639	12	7	Median	1.3146	1.0811	7.4002	2	1	Median	0.72623	0.88175	20.343	3	2	Median	1.0637	1.0528	16.535	3	1	Median	1.0436	1.1185	16.01	4	3	Median	2407400000	1138300000	1269100000	261030000	109070000	151970000	647160000	352080000	295080000	681620000	309160000	372460000	817610000	367980000	449630000	25447	1693	24096	159472;159473;159474;159475;159476;159477;159478;159479;159480;159481;159482;159483	215897;215898;215899;215900;215901;215902;215903;215904;215905;215906;215907;215908	215900			12	
IMYDLTSKPPGTTEWE	1	Oxidation (M)	1882.8659	0.86588087	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	1	By MS/MS			By MS/MS	1	0	2									1			1	66.947	66.13	2	0.0012205	60284	160511_QHF_FH_JSI12i_1	73.848	48.631			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25448	1693	24096	159484;159485	215909;215910	215909		1369	2	
IMYHASK	1	Unmodified	848.42146	0.42145889	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	8.9901	8.8082	3	0.019583	6185	160511_QHF_FH_JSI12i_3	34.253	22.206			1.0728	1.1129	14.854	3	0	Plateau	1.0099	0.82686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0467	0.96118	NaN	1	0	Median	1.0728	1.1129	NaN	1	0	Median	439830000	238830000	201000000	98148000	62536000	35612000	0	0	0	139020000	75848000	63170000	202660000	100450000	102210000	25449	1517	24097	159486;159487;159488;159489	215911;215912;215913	215912			3	
IMYLSEAYFR	0	Unmodified	1291.6271	0.62709457	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	2	1	1	75.589	73.402	2	0.0040241	65882	160511_QHF_FH_JSI10i_2	58.23	22.286			0.67661	0.73609	28.167	4	3	Median	1.2891	1.1029	NaN	1	1	Median	0.55073	0.64964	NaN	1	1	Median	0.83128	0.83403	NaN	1	1	Median	0.54839	0.58699	NaN	1	0	Median	541950000	358620000	183320000	38984000	14915000	24070000	356160000	260700000	95461000	105070000	52789000	52281000	41730000	30219000	11511000	25450	5743	24098	159490;159491;159492;159493;159494	215914;215915;215916;215917;215918	215917			5	
IMYSHLVDYFPEYDGPQR	0	Unmodified	2229.0201	0.0200901	1697	P50148	GNAQ	Guanine nucleotide-binding protein G(q) subunit alpha	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.24	80.24	3	4.3609E-07	71696	160511_QHF_FH_JSI11i_3	82.482	74.86			1.5091	1.3971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5091	1.3971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41118000	11395000	29723000	0	0	0	0	0	0	41118000	11395000	29723000	0	0	0	25451	1697	24099	159495	215919	215919			1	
IMYTVFEHTFHVR	0	Unmodified	1678.829	0.82898227	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			10						16	10	7	4	5	72.261	66.506	2;3;4	3.6639E-40	34073	160513_QHF_FH_JSI12Kac_6	209.97	162.36			1.1944	1.0948	24.579	26	14	Median	1.2511	1.0465	20.229	10	6	Median	0.91743	1.0585	39.734	7	5	Median	1.2842	1.2212	7.7237	4	1	Median	1.0515	1.1256	14.144	5	2	Median	16365000000	8835300000	7529300000	3620700000	1824900000	1795900000	8334000000	5137900000	3196100000	1529800000	523880000	1006000000	2880000000	1348600000	1531400000	25452	1519	24100	159496;159497;159498;159499;159500;159501;159502;159503;159504;159505;159506;159507;159508;159509;159510;159511;159512;159513;159514;159515;159516;159517;159518;159519;159520;159521	215920;215921;215922;215923;215924;215925;215926;215927;215928;215929;215930;215931;215932;215933;215934;215935;215936;215937;215938;215939;215940;215941;215942;215943;215944;215945;215946;215947;215948;215949;215950;215951;215952;215953;215954	215946			35	
IMYTVFEHTFHVR	0	Oxidation (M)	1694.8239	0.8238969	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	69.747	60.85	3;4	2.2267E-26	33182	160513_QHF_FH_JSI10Kac_6	173.76	152.48			1.1216	1.1353	6.869	8	0	Median	1.2829	1.0944	0.47897	2	0	Median	1.0142	1.2043	3.3466	2	0	Median	1.2314	1.1788	0.61113	2	0	Median	0.97336	1.0271	0.98862	2	0	Median	1880200000	923720000	956510000	247160000	108750000	138410000	919940000	458210000	461730000	146110000	56667000	89442000	567020000	300100000	266930000	25453	1519	24100	159522;159523;159524;159525;159526;159527;159528;159529	215955;215956;215957;215958;215959;215960;215961;215962;215963;215964;215965;215966	215966		1193	12	
INAAHGFSLIQVDNTK	1	Unmodified	1726.9002	0.90023296	4342	Q9BPZ7	MAPKAP1	Target of rapamycin complex 2 subunit MAPKAP1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6.25	5.63			3						1		3		1	60.103	59.207	3	1.0713E-07	49578	160511_QHF_FH_JSI10i_3	91.657	72.386			1.2814	1.3731	42.667	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6281	1.8567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0084	1.0155	NaN	1	1	Median	127440000	55118000	72323000	0	0	0	48217000	20094000	28122000	0	0	0	79224000	35024000	44201000	25454	4342	24101	159530;159531;159532;159533	215967;215968;215969;215970	215968			4	
INAANYASVK	1	Unmodified	1049.5506	0.55055881	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	2	3	2	31.701	29.038	2	0.00087087	26010	160511_QHF_FH_JSI10i_1	69.276	47.748			0.92975	0.91841	15.75	9	0	Median	1.2859	1.0867	25.717	2	0	Median	0.75463	0.91601	8.7899	2	0	Median	1.0571	1.0747	14	3	0	Median	0.80691	0.86313	5.987	2	0	Median	833690000	417270000	416420000	177660000	83147000	94516000	238460000	128570000	109890000	269030000	127070000	141950000	148540000	78479000	70057000	25455	4126	24102	159534;159535;159536;159537;159538;159539;159540;159541;159542	215971;215972;215973;215974;215975;215976;215977;215978;215979;215980	215973			10	
INAGMLAQFIDK	1	Unmodified	1319.6908	0.69075746	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	91.005	90.445	2	1.2344E-05	78612	160511_QHF_FH_JSI12i_3	116.55	78.46			0.80448	0.7888	7.5894	4	0	Median	0.87688	0.70266	NaN	1	0	Median	0.72649	0.84288	NaN	1	0	Median	0.83926	0.79487	NaN	1	0	Median	0.77113	0.78279	NaN	1	0	Median	299360000	161110000	138240000	48302000	20246000	28056000	42735000	25764000	16971000	106690000	54686000	52007000	101620000	60416000	41208000	25456	1427	24103	159543;159544;159545;159546	215981;215982;215983;215984;215985;215986	215986			6	
INALTAASEAACLIVSVDETIK	1	Unmodified	2288.1934	0.19336302	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.75	5.93		2	1						1		1	2	1	102.42	99.974	3	7.1086E-15	90975	160511_QHF_FH_JSI11i_2	126.51	115.21			0.84454	0.89453	22.359	4	3	Median	NaN	NaN	NaN	0	0	Median	0.83288	0.93152	NaN	1	1	Median	0.81521	0.82058	6.4746	2	2	Median	1.2524	1.3085	NaN	1	0	Median	267140000	147840000	119300000	0	0	0	20144000	14652000	5492300	213590000	117760000	95824000	33406000	15423000	17983000	25457	4321	24104	159547;159548;159549;159550	215987;215988;215989;215990	215988			4	
INAWNSPTLPIYEPGLK	1	Unmodified	1912.0094	0.0094490594	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.661	3	4	1									5	3	90.515	90.006	2;3	1.3813E-07	81992	160511_QHF_FH_JSI11i_1	126.1	110.9			0.55234	0.56541	38.035	7	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43543	0.43902	47.838	4	1	Linear	0.5265	0.56052	27.004	3	2	Median	252810000	159690000	93126000	0	0	0	0	0	0	161870000	99596000	62278000	90941000	60093000	30848000	25458	440	24105	159551;159552;159553;159554;159555;159556;159557;159558	215991;215992;215993;215994;215995;215996;215997;215998;215999	215991			9	
INDALSCEYECR	0	Unmodified	1528.6286	0.62862749	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		36.331	36.076	2	0.0037664	32424	160511_QHF_FH_JSI11i_1	64.439	46.127			3.0653	3.0456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0653	3.0456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26825000	9348700	17477000	0	0	0	0	0	0	26825000	9348700	17477000	0	0	0	25459	2844	24106	159559;159560	216000;216001	216000			2	
INDFVLSPGPQPYK	1	Unmodified	1573.814	0.81404372	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	66.297	65.581	2;3	1.6467E-06	56418	160511_QHF_FH_JSI12i_2	132.32	114.46			0.881	0.89841	12.334	9	3	Median	1.1305	0.94149	11.213	2	0	Median	0.83707	0.99045	20.125	2	1	Median	0.85187	0.86361	17.254	3	2	Median	0.87904	0.92678	4.3955	2	0	Median	661960000	350640000	311330000	120920000	68699000	52222000	142400000	78164000	64240000	275170000	145110000	130070000	123460000	58668000	64797000	25460	4535	24107	159561;159562;159563;159564;159565;159566;159567;159568;159569	216002;216003;216004;216005;216006;216007;216008;216009;216010;216011	216004			10	
INDRFEFPEQLPLDEFLQK	1	Unmodified	2377.1954	0.19541193	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.38	101.38	3	1.1788E-06	90398	160511_QHF_FH_JSI11i_3	103.1	78.21			0.80565	0.75533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80565	0.75533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	399950000	230290000	169660000	0	0	0	0	0	0	399950000	230290000	169660000	0	0	0	25461	3922	24108	159570	216012	216012			1	
INEAIVAVQAIIADPK	1	Unmodified	1663.9509	0.95087155	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.386	2	9								2	3	3	3	96.717	96.479	2;3	9.734E-05	85258	160511_QHF_FH_JSI10i_2	52.172	46.513			0.99151	0.99705	19.078	11	3	Median	1.0854	0.93563	3.3274	2	0	Median	0.99121	1.1833	16.699	3	1	Median	0.99151	0.99705	19.445	3	0	Plateau	0.85774	0.93984	15.049	3	2	Median	188360000	85279000	103080000	33078000	15217000	17860000	42741000	20502000	22239000	51404000	19477000	31926000	61135000	30082000	31052000	25462	5486	24109	159571;159572;159573;159574;159575;159576;159577;159578;159579;159580;159581	216013;216014;216015;216016;216017;216018;216019;216020;216021;216022;216023;216024;216025	216024			13	
INEALITTILHLLNHPK	1	Unmodified	1939.1255	0.12548187	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	97.937	91.178	4	9.2096E-18	52132	160513_QHF_FH_JSI10Kac_6	145.55	131.89			1.2504	1.0736	38.602	5	0	Median	1.1867	1.0047	9.3843	2	0	Median	0.56426	0.68168	NaN	1	0	Median	1.2504	1.168	NaN	1	0	Median	1.8262	1.9678	NaN	1	0	Median	789350000	402630000	386720000	185290000	79043000	106250000	274190000	169320000	104860000	185320000	98262000	87057000	144550000	56002000	88552000	25463	3136	24110	159582;159583;159584;159585;159586	216026;216027;216028;216029;216030;216031;216032;216033;216034	216034			9	
INEAVECLLSLK	1	Unmodified	1387.7381	0.73810158	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	84.519	83.914	2	3.4056E-05	72437	160511_QHF_FH_JSI12i_2	105.46	78.346			1.2248	1.3658	69.759	7	6	Median	0.669	0.56741	NaN	1	1	Median	0.93129	1.1359	111.61	2	2	Median	0.82769	0.83883	88.584	2	2	Median	1.4631	1.5953	21.963	2	1	Median	762920000	345950000	416980000	51272000	20446000	30826000	204340000	92490000	111850000	355290000	171480000	183810000	152020000	61530000	90490000	25464	878	24111	159587;159588;159589;159590;159591;159592;159593	216035;216036;216037;216038;216039;216040;216041;216042	216035			8	
INEEISVK	1	Unmodified	930.50221	0.50221163	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.992	27.405	2	0.0072746	24225	160511_QHF_FH_JSI10i_1	60.019	24.139			0.84696	0.83443	10.401	4	0	Median	1.0745	0.88916	NaN	1	0	Median	0.64056	0.76555	NaN	1	0	Median	0.79556	0.78306	NaN	1	0	Median	0.90168	0.9524	NaN	1	0	Median	833450000	439100000	394350000	159370000	79246000	80126000	222950000	129280000	93674000	238420000	120400000	118010000	212710000	110170000	102540000	25465	4442	24112	159594;159595;159596;159597	216043;216044;216045;216046;216047	216046			5	
INEELESQYQQSMDSK	1	Unmodified	1927.8469	0.84693634	105	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	45.15	44.368	2	1.8881E-65	40261	160511_QHF_FH_JSI12i_1	232.37	219.17			1.0187	1.1242	44.382	5	2	Median	1.1638	0.95944	85.726	2	2	Median	0.96436	1.1242	NaN	1	0	Median	1.2885	1.2589	NaN	1	0	Median	1.0187	1.0908	NaN	1	0	Median	1077900000	472650000	605270000	300640000	114570000	186070000	244140000	110960000	133180000	257010000	107660000	149350000	276140000	139460000	136670000	25466	105	24113	159598;159599;159600;159601;159602	216048;216049;216050;216051;216052;216053;216054;216055;216056	216050			9	
INEGIGQGDLSELPELHALTAGLK	1	Unmodified	2474.3017	0.30166791	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.51	100.38	3	5.4582E-21	88041	160511_QHF_FH_JSI9i_2	127.83	111.53			0.93917	0.9722	14.147	4	0	Median	0.97716	0.82533	NaN	1	0	Median	0.9291	1.1646	NaN	1	0	Median	0.94936	0.95428	NaN	1	0	Median	0.89356	0.99046	NaN	1	0	Median	453820000	235950000	217880000	53798000	27904000	25894000	106930000	63802000	43132000	116670000	62367000	54303000	176420000	81873000	94547000	25467	2624	24114	159603;159604;159605;159606	216057;216058;216059;216060;216061;216062;216063;216064;216065	216060			9	
INEGLEHLAK	1	Unmodified	1122.6033	0.60332266	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		28.299	27.65	3	0.001525	23225	160511_QHF_FH_JSI11i_2	52.693	32.389			1.0788	1.2309	42.5	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74511	0.9114	NaN	1	0	Median	1.5619	1.6624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77464000	33809000	43655000	0	0	0	38450000	21086000	17365000	39013000	12723000	26290000	0	0	0	25468	4311	24115	159607;159608	216066;216067	216066			2	
INEILSNALK	1	Unmodified	1113.6394	0.63937381	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.65	3	6	4				2	3		2	6	6	4	58.52	54.884	2	4.9264E-05	47229	160511_QHF_FH_JSI12i_2	93.111	68.188			1.033	0.99342	55.324	18	9	Median	1.0622	0.88753	10.864	2	0	Median	0.89587	1.0412	70.964	6	6	Median	0.92201	0.90888	62.493	6	3	Median	1.0723	1.1555	41.128	4	0	Median	6736200000	3266400000	3469800000	883600000	352570000	531030000	1882600000	1016000000	866690000	2692800000	1301400000	1391500000	1277100000	596490000	680600000	25469	1765	24116	159609;159610;159611;159612;159613;159614;159615;159616;159617;159618;159619;159620;159621;159622;159623;159624;159625;159626	216068;216069;216070;216071;216072;216073;216074;216075;216076;216077;216078;216079;216080;216081;216082;216083;216084;216085;216086;216087;216088	216072			21	
INEKPQVIADYESGR	1	Unmodified	1717.8635	0.8635131	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	3	1	39.02	38.437	2;3	5.9838E-06	33746	160511_QHF_FH_JSI10i_2	136.27	104.26			1.0586	0.99901	17.22	8	0	Median	1.4853	1.2894	7.0727	2	0	Median	0.79141	0.96496	1.5995	2	0	Median	1.111	1.0226	4.7857	3	0	Plateau	0.75899	0.76581	NaN	1	0	Median	1225100000	569830000	655280000	214140000	78949000	135200000	300060000	166500000	133560000	535200000	250790000	284410000	175700000	73594000	102110000	25470	455	24117	159627;159628;159629;159630;159631;159632;159633;159634	216089;216090;216091;216092;216093;216094;216095;216096;216097;216098;216099;216100	216099			12	
INELMPK	1	Unmodified	843.45242	0.45242467	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								2	1	1		30.477	29.761	2	0.035999	25941	160511_QHF_FH_JSI9i_1	49.358	24.36			1.2364	1.1252	23.443	4	0	Median	1.2364	1.0355	17.309	2	0	Median	0.93471	1.0818	NaN	1	0	Median	1.6641	1.6026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	527110000	256610000	270500000	211320000	95149000	116170000	167650000	95231000	72416000	148150000	66231000	81920000	0	0	0	25471	1849	24118	159635;159636;159637;159638	216101	216101			1	
INELPTEETEIMIVQAK	1	Unmodified	1957.0078	0.0077940794	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	81.516	80.997	3	0.00018741	73854	160511_QHF_FH_JSI12i_1	64.454	53.638			1.5435	1.5325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5435	1.5325	NaN	1	1	Median	14398000	5527800	8870500	0	0	0	0	0	0	0	0	0	14398000	5527800	8870500	25472	457	24119	159639;159640	216102;216103	216103			2	
INEPPKPAPR	1	Unmodified	1117.6244	0.62439245	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.169	14.169	3	0.0032142	11412	160511_QHF_FH_JSI11i_3	51.268	34.037			0.99162	0.94047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99162	0.94047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108700000	60279000	48421000	0	0	0	0	0	0	108700000	60279000	48421000	0	0	0	25473	2137	24120	159641	216104;216105	216105			2	
INEVLTAAVTQASLQSIIHK	1	Unmodified	2135.195	0.195018	4412	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	94.495	94.003	3	7.8677E-07	83167	160511_QHF_FH_JSI10i_2	100.28	87.392			0.77016	0.88145	71.313	2	2	Median	NaN	NaN	NaN	0	0	Median	0.42965	0.53235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3805	1.4595	NaN	1	1	Median	42728000	28324000	14404000	0	0	0	29526000	21855000	7671900	0	0	0	13202000	6469400	6732400	25474	4412	24121	159642;159643	216106;216107	216107			2	
INEVQTDVGVDTK	1	Unmodified	1416.7096	0.70963822	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	2	2	37.162	35.231	2	5.1076E-22	31588	160511_QHF_FH_JSI10i_1	172.76	125.15			1.0856	1.0743	48.908	7	4	Median	1.2172	1.0174	59.718	2	2	Median	0.7111	0.84774	NaN	1	0	Median	1.0531	1.0195	7.4047	2	0	Median	1.9547	2.0467	52.456	2	2	Median	1042300000	492630000	549650000	292650000	134790000	157860000	226150000	140680000	85475000	201330000	74208000	127120000	322150000	142960000	179190000	25475	2306	24122	159644;159645;159646;159647;159648;159649;159650	216108;216109;216110;216111;216112;216113;216114;216115;216116	216114			9	
INEWLTLVEK	1	Unmodified	1243.6812	0.68123863	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.262	80.479	2	0.001479	70593	160511_QHF_FH_JSI11i_2	65.627	45.84			0.90096	0.95522	5.848	4	0	Median	1.0879	0.91481	NaN	1	0	Median	0.8606	1.0496	NaN	1	0	Median	0.93149	0.94677	NaN	1	0	Median	0.87143	0.96376	NaN	1	0	Median	426540000	222840000	203690000	75255000	36564000	38692000	85519000	44483000	41035000	164760000	82143000	82619000	101000000	59651000	41348000	25476	2517	24123	159651;159652;159653;159654	216117;216118;216119;216120;216121;216122;216123	216120			7	
INFAVFPSLQGGPHNHAIAAVAVALK	1	Unmodified	2641.4493	0.44927563	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	3	4	4	89.806	81.368	2;3;4	0	44909	160513_QHF_FH_JSI10Kac_6	412.17	355.03			0.96202	0.8919	18.86	14	0	Median	1.0072	0.82522	4.6519	3	0	Plateau	0.75041	0.89207	2.9793	3	0	Plateau	1.185	1.1142	6.4519	4	0	Median	0.83317	0.87669	29.437	4	0	Median	8614700000	4372900000	4241800000	2108200000	1054500000	1053700000	3274100000	1800200000	1473800000	2515500000	1157800000	1357800000	716960000	360480000	356490000	25477	1415	24124	159655;159656;159657;159658;159659;159660;159661;159662;159663;159664;159665;159666;159667;159668	216124;216125;216126;216127;216128;216129;216130;216131;216132;216133;216134;216135;216136;216137;216138;216139;216140;216141;216142;216143;216144;216145;216146;216147;216148;216149	216149			26	
INFDALLK	1	Unmodified	932.53312	0.53311783	1845	P55061	TMBIM6	Bax inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.636	77.817	2	0.011461	67271	160511_QHF_FH_JSI12i_2	54.157	33.637			0.92025	0.98525	3.3896	4	0	Median	1.1254	0.99545	NaN	1	0	Median	0.81968	1.0089	NaN	1	0	Median	0.99057	0.97515	NaN	1	0	Median	0.85492	0.93361	NaN	1	0	Median	157620000	77950000	79668000	30603000	14325000	16278000	33819000	18437000	15383000	55854000	26515000	29339000	37341000	18674000	18668000	25478	1845	24125	159669;159670;159671;159672	216150;216151;216152;216153;216154;216155;216156	216151			7	
INFDDNAEFR	0	Unmodified	1239.552	0.55201537	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.236	51.566	2	0.0036249	46432	160511_QHF_FH_JSI10i_1	56.258	49.667			1.084	1.1361	6.898	4	0	Median	1.5101	1.2475	NaN	1	0	Median	0.98022	1.1763	NaN	1	0	Median	1.1209	1.0973	NaN	1	0	Median	1.0484	1.0716	NaN	1	0	Median	349340000	179200000	170140000	56695000	24926000	31768000	127440000	66066000	61379000	95547000	48677000	46870000	69654000	39535000	30119000	25479	4122	24126	159673;159674;159675;159676	216157;216158;216159;216160	216159			4	
INFDKYHPGYFGK	2	Acetyl (K)	1626.7831	0.78307794	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	73.112	64.242	2;3	6.4713E-20	34751	160513_QHF_FH_JSI11Kac_6	156.71	140.46			0.31745	0.33509	83.199	5	0	Median	0.86649	0.71688	NaN	1	0	Median	1.4737	1.7694	NaN	1	0	Median	0.26778	0.25728	3.0764	2	0	Median	0.31745	0.33509	NaN	1	0	Median	904880000	646250000	258630000	15089000	8398200	6690900	142800000	77491000	65308000	669110000	502230000	166880000	77877000	58134000	19743000	25480	1589	24127	159677;159678;159679;159680;159681	216161;216162;216163;216164;216165;216166;216167;216168;216169	216163	1598;1599		9	
INFDMSSLVVSLAHGAVIYATK	1	Unmodified	2335.2246	0.22460357	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	99.329	93.265	3	1.1115E-28	51137	160513_QHF_FH_JSI9Kac_6	147.39	125.58			1.0217	0.97337	33.232	4	2	Median	0.94538	0.79402	NaN	1	0	Median	0.77283	0.90977	NaN	1	1	Median	1.1041	1.0414	NaN	1	1	Median	1.698	1.702	NaN	1	0	Median	598620000	287290000	311330000	170610000	85987000	84625000	119150000	59431000	59722000	217590000	107980000	109610000	91264000	33893000	57371000	25481	708	24128	159682;159683;159684;159685;159686	216170;216171;216172;216173;216174;216175	216172			5	
INFDSNSAYR	0	Unmodified	1185.5415	0.54145068	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.066	35.714	2	0.037206	30421	160511_QHF_FH_JSI12i_2	38.303	19.521			1.0748	1.2008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0748	1.2008	NaN	1	0	Median	108090000	52592000	55494000	0	0	0	0	0	0	0	0	0	108090000	52592000	55494000	25482	5223	24129	159687	216176;216177	216177			2	
INFLVNNGGGQFLSPAEHISSK	1	Unmodified	2328.1862	0.18624423	4536	Q9BY49	PECR	Peroxisomal trans-2-enoyl-CoA reductase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.25	81.25	3	1.2948E-05	72577	160511_QHF_FH_JSI11i_3	63.869	50.638			1.1294	1.0775	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1294	1.0775	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18125000	7489500	10636000	0	0	0	0	0	0	18125000	7489500	10636000	0	0	0	25483	4536	24130	159688	216178	216178			1	
INFVGGNK	1	Unmodified	847.4552	0.45520186	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	27.702	27.679	2	0.017274	23122	160511_QHF_FH_JSI12i_3	46.994	18.571			0.668	0.64307	9.8528	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6562	0.59979	NaN	1	0	Median	0.68001	0.68947	NaN	1	1	Median	258000000	133970000	124040000	0	0	0	0	0	0	91514000	46714000	44800000	166490000	87253000	79236000	25484	4161	24131	159689;159690;159691	216179;216180;216181	216181			3	
INFVGGNKLQSTGNK	2	Acetyl (K)	1617.8475	0.84746911	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	65.343	54.594	2	0.010178	27521	160513_QHF_FH_JSI10Kac_5	56.094	31.713			0.82606	0.89473	15.158	5	0	Median	NaN	NaN	NaN	0	0	Median	0.79906	0.93392	6.3134	2	0	Median	1.2051	1.2085	NaN	1	0	Median	0.78262	0.85074	7.1297	2	0	Median	14488000	7319600	7168500	0	0	0	4800600	2467000	2333600	3820400	1860600	1959800	5867100	2992000	2875000	25485	4161	24132	159692;159693;159694;159695;159696	216182;216183;216184	216184	3063		2	
INFVIDNNK	1	Unmodified	1075.5662	0.56620887	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4	4.97	2	2	1					1			3	3		51.979	49.578	2	0.0013012	43863	160511_QHF_FH_JSI10i_2	72.643	31.614			0.744	0.76333	51.734	5	3	Median	NaN	NaN	NaN	0	0	Median	0.70765	0.81106	8.5781	2	1	Median	0.8168	0.83149	66.02	3	2	Plateau	NaN	NaN	NaN	0	0	Median	799330000	496130000	303200000	0	0	0	153920000	85329000	68590000	645410000	410800000	234610000	0	0	0	25486	543	24133	159697;159698;159699;159700;159701;159702	216185;216186;216187;216188;216189	216188			5	
INFVIDNNKHTGAVSAR	1	Acetyl (K)	1896.9806	0.98060855	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.341	52.642	3	0.018056	28500	160513_QHF_FH_JSI11Kac_6	46.663	28.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3037600	3037600	0	0	0	0	0	0	0	3037600	3037600	0	0	0	0	25487	543	24134	159703	216190	216190	285		1	
INFVLNSVAHLQR	0	Unmodified	1509.8416	0.84159587	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.307	68.935	3	0.0082369	37555	160513_QHF_FH_JSI10Kac_6	37.366	25.201			1.1926	1.4249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1926	1.4249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73600000	42600000	30999000	0	0	0	73600000	42600000	30999000	0	0	0	0	0	0	25488	303	24135	159704	216191	216191			1	
INFYCPGSALGR	0	Unmodified	1353.65	0.64995528	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		63.25	62.284	2	0.001731	52080	160511_QHF_FH_JSI10i_3	60.434	56.416			0.91228	1.0295	15.926	4	0	Median	1.2681	1.0112	NaN	1	0	Median	0.90609	1.1079	7.8339	2	0	Median	0.86468	0.80175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242910000	118610000	124300000	49285000	18429000	30856000	115400000	57262000	58134000	78230000	42916000	35314000	0	0	0	25489	5658	24136	159705;159706;159707;159708	216192;216193;216194	216193			3	
INGDWQR	0	Unmodified	887.42496	0.42496436	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	18.438	17.709	2	0.019546	15039	160511_QHF_FH_JSI10i_2	58.167	38.321			0.99159	1.1678	7.0279	4	0	Linear	1.2916	1.1039	NaN	1	0	Median	0.87287	1.0697	NaN	1	0	Median	1.1265	1.1257	NaN	1	0	Median	0.86475	0.96151	NaN	1	0	Median	670270000	354610000	315650000	175580000	72511000	103070000	130510000	78279000	52232000	239520000	134520000	105010000	124660000	69308000	55350000	25490	1544	24137	159709;159710;159711;159712	216195;216196;216197;216198;216199	216198			5	
INGEAQPWLSTSTEGLK	1	Unmodified	1829.9159	0.9159426	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.225	64.61	2	1.543E-07	58641	160511_QHF_FH_JSI11i_1	128.54	104.16			0.99266	1.0221	18.904	4	1	Median	1.2909	1.0539	NaN	1	1	Median	0.87545	0.99115	NaN	1	0	Median	1.1256	1.0891	NaN	1	0	Median	0.6813	0.72113	NaN	1	0	Median	155470000	80781000	74684000	35581000	15451000	20130000	34571000	18803000	15768000	35192000	18761000	16432000	50120000	27767000	22354000	25491	3283	24138	159713;159714;159715;159716	216200;216201;216202;216203;216204	216200			5	
INGIPVEELAK	1	Unmodified	1181.6656	0.66558856	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	63.123	62.356	2	0.0002094	55408	160511_QHF_FH_JSI9i_1	80.688	58.557			1.0434	1.1673	19.201	5	0	Median	1.4272	1.1673	NaN	1	0	Median	1.0434	1.2283	NaN	1	0	Median	1.5031	1.4829	NaN	1	0	Median	0.91809	0.96145	11.943	2	0	Median	595000000	265530000	329480000	124300000	52505000	71795000	134510000	65784000	68723000	178130000	63144000	114980000	158070000	84094000	73973000	25492	1388	24139	159717;159718;159719;159720;159721	216205;216206;216207;216208;216209;216210;216211;216212	216212			8	
INHEGEVNR	0	Unmodified	1066.5156	0.51557028	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.96	6.55		8	6					7	7	6	6	8	8	5.7252	1.3037	2;3	1.4093E-11	1927	160513_QHF_FH_JSI12Kac_5	133.23	114.79			1.0049	1.0575	11.199	28	1	Median	1.219	1.0849	11.133	6	1	Plateau	0.94819	1.1298	14.79	6	0	Median	1.1432	1.1239	9.6344	8	0	Median	0.93101	0.98997	5.6769	8	0	Median	26028000000	12807000000	13222000000	3682800000	1678900000	2004000000	5379800000	2630000000	2749800000	7835100000	3650300000	4184800000	9130600000	4847400000	4283100000	25493	2283;2741	24140	159722;159723;159724;159725;159726;159727;159728;159729;159730;159731;159732;159733;159734;159735;159736;159737;159738;159739;159740;159741;159742;159743;159744;159745;159746;159747;159748;159749	216213;216214;216215;216216;216217;216218;216219;216220;216221;216222;216223;216224;216225;216226;216227;216228;216229;216230;216231;216232;216233;216234;216235;216236;216237;216238;216239;216240;216241;216242;216243;216244;216245;216246;216247;216248;216249;216250;216251;216252;216253;216254;216255	216238			43	
INHLEYEDQYK	1	Unmodified	1450.6729	0.67285879	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		28.619	28.064	2;3	3.4655E-05	23653	160511_QHF_FH_JSI11i_2	98.048	81.475			0.68086	0.70496	24.079	3	0	Median	NaN	NaN	NaN	0	0	Median	0.44208	0.54508	NaN	1	0	Median	0.76613	0.7885	15.837	2	0	Median	NaN	NaN	NaN	0	0	Median	144750000	82479000	62273000	0	0	0	47211000	27848000	19363000	97541000	54631000	42910000	0	0	0	25494	396	24141	159750;159751;159752	216256;216257;216258;216259	216258			4	
INHSNNAIVKPPEMTPQAAAK	2	Unmodified	2230.1528	0.15283561	3806	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		37.669	36.825	3;4	4.5027E-07	30902	160511_QHF_FH_JSI10i_3	82.609	74.009			0.98473	0.95182	23.727	7	2	Median	1.2238	0.99179	30.916	2	0	Median	0.79545	0.92665	3.7893	2	0	Median	1.024	0.96212	31.127	3	2	Median	NaN	NaN	NaN	0	0	Median	399810000	215160000	184640000	72729000	29647000	43082000	109910000	65194000	44713000	217170000	120320000	96850000	0	0	0	25495	3806	24142	159753;159754;159755;159756;159757;159758;159759	216260;216261;216262;216263;216264;216265;216266;216267;216268;216269;216270;216271	216267			11	
INIILSETDRDPLQVV	0	Unmodified	1823.9993	0.9992783	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	97.605	97.346	2	0.0055274	83714	160511_QHF_FH_JSI12i_2	62.14	38.535			1.2034	1.2418	21.214	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4792	1.4427	NaN	1	1	Median	0.97903	1.0688	NaN	1	0	Median	22571000	10820000	11751000	0	0	0	0	0	0	10148000	3819100	6328600	12423000	7000900	5422100	25496	4608	24143	159760;159761	216272;216273	216272			2	
INIPPPSVNR	0	Unmodified	1105.6244	0.62439245	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	43.374	42.447	2	0.049763	36462	160511_QHF_FH_JSI11i_2	48.794	39.206			2.6247	2.7123	101.68	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.5726	5.5666	NaN	1	0	Median	1.2363	1.3215	NaN	1	0	Median	141090000	55787000	85302000	0	0	0	0	0	0	99768000	40254000	59514000	41321000	15533000	25788000	25497	2147	24144	159762;159763	216274	216274			0	
INIPPPSVNRTEIVFTGEK	1	Unmodified	2110.1423	0.14225415	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		72.512	71.049	3	0.0013825	58561	160511_QHF_FH_JSI9i_3	50.387	27.734			0.97931	0.9151	17.499	4	4	Median	1.0087	0.81155	9.282	2	2	Median	0.91954	1.0538	12.256	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171670000	95347000	76319000	93758000	51115000	42643000	77909000	44232000	33676000	0	0	0	0	0	0	25498	2147	24145	159764;159765;159766;159767;159768;159769	216275;216276;216277;216278;216279;216280;216281;216282	216280			8	
INIPPQR	0	Unmodified	836.48684	0.48683634	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							2	1		1	30.139	28.908	2	0.012443	21693	160511_QHF_FH_JSI9i_3	59.641	44.42			0.87849	0.95817	8.9087	3	3	Median	1.3008	1.1177	NaN	1	1	Median	0.83177	0.95758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87849	0.95817	NaN	1	1	Median	93694000	47185000	46510000	38068000	17296000	20772000	28487000	16856000	11631000	0	0	0	27139000	13033000	14107000	25499	2381	24146	159770;159771;159772;159773	216283;216284;216285;216286	216285			4	
INIRVLDPFTIK	1	Unmodified	1427.85	0.85003529	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	88.97	88.227	3	0.00050336	78416	160511_QHF_FH_JSI11i_3	74.76	54.297			0.029584	0.032616	341.71	3	3	Plateau	18.423	15.091	NaN	1	1	Median	0.028558	0.032616	NaN	1	1	Median	0.056591	0.051879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80407000	56807000	23601000	23499000	1425800	22073000	28643000	28002000	640700	28265000	27378000	886880	0	0	0	25500	1322	24147	159774;159775;159776;159777	216287;216288;216289;216290	216287			4	
INISEGNCPER	0	Unmodified	1287.5877	0.58774895	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.18	4	4	2				3			2	3	4	4	27.844	25.27	2	2.3578E-07	21173	160511_QHF_FH_JSI12i_2	121.73	102.64			1.0867	1.1921	22.564	13	0	Median	1.5682	1.2971	11.937	2	0	Median	0.98396	1.1649	8.2429	3	0	Median	0.9456	0.95042	16.959	4	0	Median	1.4029	1.4885	8.3022	4	0	Median	3515400000	1702500000	1812900000	397720000	149720000	248000000	858650000	480780000	377870000	1216700000	638440000	578270000	1042300000	433550000	608790000	25501	2656;1893;2657	24148	159778;159779;159780;159781;159782;159783;159784;159785;159786;159787;159788;159789;159790	216291;216292;216293;216294;216295;216296;216297;216298;216299;216300;216301;216302;216303;216304;216305;216306;216307;216308;216309;216310	216296			20	
INISQVIAVVGQQNVEGK	1	Unmodified	1895.0476	0.04762548	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		99.842	99.716	3	2.4203E-09	88499	160511_QHF_FH_JSI11i_3	137.45	119.53			0.79916	0.71919	10.855	3	2	Median	0.8036	0.65427	NaN	1	1	Median	0.71012	0.81244	NaN	1	1	Median	0.79916	0.71919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116820000	62115000	54708000	38097000	19268000	18829000	38679000	22558000	16121000	40047000	20289000	19758000	0	0	0	25502	1251	24149	159791;159792;159793;159794	216311;216312;216313;216314;216315	216312			5	
INIYSNSLEAVAR	0	Unmodified	1448.7623	0.7623425	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.977	63.676	2	0.014771	54682	160511_QHF_FH_JSI12i_2	52.79	24.063			0.55887	0.62312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55887	0.62312	NaN	1	1	Median	28742000	20566000	8175700	0	0	0	0	0	0	0	0	0	28742000	20566000	8175700	25503	3585	24150	159795	216316	216316			1	
INLDLILELLAYLDK	1	Unmodified	1758.0179	0.017888481	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.2	98.483	2	7.4672E-10	58284	160513_QHF_FH_JSI10Kac_6	117.2	75.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25504	3267	24151	159796	216317	216317			1	
INLIAPPR	0	Unmodified	892.54944	0.54943659	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	50.172	49.378	2	0.0016919	42554	160511_QHF_FH_JSI11i_2	86.086	51.194			0.91003	1.0024	5.7011	6	0	Median	1.2342	1.014	NaN	1	0	Median	0.88508	1.0624	2.263	2	0	Median	0.93114	0.93911	1.5359	2	0	Median	0.88458	0.99089	NaN	1	0	Median	2243000000	1186300000	1056700000	403120000	188150000	214970000	665860000	363220000	302650000	734450000	392630000	341820000	439600000	242330000	197270000	25505	832	24152	159797;159798;159799;159800;159801;159802	216318;216319;216320;216321;216322;216323;216324;216325	216324			8	
INLNLIYDHNPK	1	Unmodified	1452.7725	0.77251325	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	59.888	59.297	2;3	1.1624E-09	51028	160511_QHF_FH_JSI12i_3	118.4	82.892			0.9768	0.94686	9.4182	7	1	Median	1.0811	0.91595	NaN	1	0	Median	0.89536	1.0618	16.207	2	0	Median	0.9768	0.9267	2.3371	3	1	Median	0.92661	0.95292	NaN	1	0	Median	945410000	461370000	484040000	65108000	31451000	33657000	150560000	74291000	76265000	350810000	164460000	186350000	378940000	191170000	187770000	25506	648	24153	159803;159804;159805;159806;159807;159808;159809;159810	216326;216327;216328;216329;216330;216331;216332	216332			7	
INLPAPNPDHVGGYK	1	Unmodified	1590.8154	0.8154407	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	51.429	50.873	2;3	2.1919E-05	43528	160511_QHF_FH_JSI12i_3	107.74	87.629			0.8126	0.84621	15.026	6	1	Median	NaN	NaN	NaN	0	0	Median	0.71704	0.86852	NaN	1	0	Median	0.93472	0.91594	17.89	2	0	Median	0.81894	0.82448	18.659	3	1	Median	1002400000	533120000	469310000	0	0	0	116150000	70939000	45206000	396730000	212530000	184190000	489560000	249650000	239910000	25507	5345	24154	159811;159812;159813;159814;159815;159816	216333;216334;216335;216336;216337;216338;216339;216340;216341;216342;216343	216340			9	
INLPQKK	2	Unmodified	839.52289	0.52288749	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			17.196	16.186	3	0.025071	13087	160511_QHF_FH_JSI10i_3	31.289	7.3172			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25508	4288	24155	159817	216344	216344			1	
INLPVTALPPLWVR	0	Unmodified	1587.9501	0.95008369	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.83	101.65	2	0.0030385	82557	160511_QHF_FH_JSI9i_3	66.663	42.281			1.2539	1.0374	NaN	1	1	Median	1.2539	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31831000	11466000	20365000	31831000	11466000	20365000	0	0	0	0	0	0	0	0	0	25509	4794	24156	159818	216345	216345			1	
INLQGDIVDR	0	Unmodified	1141.6091	0.60913632	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	68.044	58.336	3	0.036634	31606	160513_QHF_FH_JSI11Kac_6	22.562	9.7499			0.32892	0.33824	7.8784	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3308	0.31991	NaN	1	1	Median	0.32706	0.35762	NaN	1	1	Median	43751000	9636000	34115000	0	0	0	0	0	0	30874000	6112600	24762000	12876000	3523500	9352600	25510	1440	24157	159819;159820	216346;216347	216346			2	
INLSQKK	2	Unmodified	829.50215	0.50215205	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			6							2	2		2	9.7756	9.3976	2;3	0.018254	6759	160511_QHF_FH_JSI12i_3	64.757	29.865			0.92895	0.97041	37.914	6	1	Median	1.5213	1.2319	3.2576	2	0	Median	0.70969	0.82467	66.303	2	1	Median	NaN	NaN	NaN	0	0	Median	0.73765	0.75244	5.4877	2	0	Median	1126300000	512400000	613870000	458230000	173110000	285120000	305960000	153410000	152550000	0	0	0	362080000	185880000	176200000	25511	1804	24158	159821;159822;159823;159824;159825;159826	216348;216349;216350	216350			3	
INLTVFK	1	Unmodified	833.50109	0.50108942	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	60.914	60.389	2	0.019031	53507	160511_QHF_FH_JSI11i_3	58.981	23.876			0.89099	1.0426	15.886	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89352	0.86529	14.118	2	0	Median	0.83116	0.88543	23.505	2	0	Median	119190000	65008000	54180000	0	0	0	0	0	0	54529000	28978000	25551000	64659000	36029000	28630000	25512	3425	24159	159827;159828;159829;159830	216351;216352	216351			2	
INLVILGK	1	Unmodified	868.57459	0.57458871	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	70.295	69.707	2	0.020224	61999	160511_QHF_FH_JSI11i_3	46.016	13.545			1.378	1.5292	15.95	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2615	1.5292	NaN	1	0	Median	1.2778	1.1841	NaN	1	0	Median	1.4862	1.5872	NaN	1	0	Median	40835000	17519000	23316000	0	0	0	5157100	1755700	3401400	15095000	6250300	8844300	20583000	9512700	11071000	25513	4974	24160	159831;159832;159833	216353	216353			1	
INLWHLEITDR	0	Unmodified	1408.7463	0.7462985	2052;3018	P63151;Q66LE6	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	2	1	1	78.152	77.264	3	0.00017121	68560	160511_QHF_FH_JSI11i_3	68.44	54.411			1.1435	1.0844	8.586	5	1	Median	1.2977	1.0726	1.5526	2	1	Median	0.94379	1.0998	NaN	1	0	Median	1.1435	1.111	NaN	1	0	Median	0.8859	0.90222	NaN	1	0	Median	159130000	80543000	78589000	45021000	20952000	24069000	24756000	14875000	9881400	63366000	32284000	31081000	25990000	12432000	13557000	25514	2052;3018	24161	159834;159835;159836;159837;159838;159839;159840	216354;216355;216356;216357;216358;216359;216360;216361;216362;216363;216364	216356			11	
INMMLANLYK	1	Unmodified	1209.625	0.62498608	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		76.695	73.821	2	0.018825	67060	160511_QHF_FH_JSI11i_3	49.715	35.597			1.5962	1.6608	37.929	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0762	1.2701	NaN	1	0	Median	2.3673	2.1717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93056000	35074000	57982000	0	0	0	23426000	11436000	11990000	69630000	23638000	45992000	0	0	0	25515	5351	24162	159841;159842	216365;216366	216365			2	
INMNGINNSSGMVDAR	0	Unmodified	1691.7719	0.77193768	2715	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	2	3	49.462	48.805	2	9.4197E-81	42105	160511_QHF_FH_JSI11i_2	247.14	212.36			1.0518	1.087	12.001	8	0	Median	1.1339	0.9599	NaN	1	0	Median	0.83422	0.98057	6.7319	2	0	Median	1.1783	1.1333	9.0952	2	0	Median	1.0577	1.1147	9.8802	3	0	Plateau	1440900000	720270000	720640000	214330000	111060000	103270000	469620000	237490000	232130000	313450000	138900000	174540000	443510000	232830000	210690000	25516	2715	24163	159843;159844;159845;159846;159847;159848;159849;159850	216367;216368;216369;216370;216371;216372;216373;216374;216375;216376;216377;216378;216379;216380;216381;216382	216378			16	
INMNGVNSSNGVVDPR	0	Unmodified	1671.7999	0.79986699	2398	Q13404	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	45.035	44.212	2	1.2787E-21	39988	160511_QHF_FH_JSI11i_1	173.44	135.36			1.0783	1.0957	5.9553	8	1	Median	1.3487	1.1184	5.7091	2	0	Median	0.88697	1.0647	8.1504	2	1	Median	1.1399	1.1241	0.80247	2	0	Median	0.9657	1.0198	4.7253	2	0	Median	629710000	313800000	315910000	107490000	42221000	65270000	182690000	98031000	84663000	178050000	95211000	82843000	161470000	78334000	83138000	25517	2398	24164	159851;159852;159853;159854;159855;159856;159857;159858	216383;216384;216385;216386;216387;216388;216389;216390;216391;216392;216393;216394;216395;216396	216383			14	
INMVEELEK	1	Unmodified	1103.5533	0.55326092	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	56.547	55.748	2	8.9167E-05	50192	160511_QHF_FH_JSI10i_1	94.692	41.976			1.0077	1.0697	12.213	8	0	Median	1.1114	0.92628	14.692	2	0	Median	0.87655	1.0703	3.7704	2	0	Median	0.9884	0.98977	14.683	2	0	Median	1.0809	1.1642	3.6369	2	0	Median	1913800000	985970000	927810000	333230000	170250000	162970000	527350000	296670000	230680000	619130000	301280000	317850000	434070000	217770000	216310000	25518	2614	24165	159859;159860;159861;159862;159863;159864;159865;159866	216397;216398;216399;216400;216401;216402;216403;216404;216405;216406;216407;216408;216409	216402			13	
INNAAFEAVVVTNTIPQEDK	1	Unmodified	2172.1063	0.10626257	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								3	2	2	3	80.255	79.707	2;3	1.1396E-24	70837	160511_QHF_FH_JSI9i_1	142.91	121.28			0.95141	1.0032	36.821	9	2	Median	1.0754	0.87559	23.798	2	1	Median	0.81256	0.96827	15.46	2	0	Median	1.0022	0.96936	17.849	2	0	Median	0.9775	1.0032	57.475	3	1	Median	625650000	297400000	328250000	95186000	41215000	53971000	226050000	120700000	105360000	158360000	65804000	92559000	146050000	69682000	76366000	25519	1008	24166	159867;159868;159869;159870;159871;159872;159873;159874;159875;159876	216410;216411;216412;216413;216414;216415;216416;216417;216418;216419;216420;216421;216422;216423;216424;216425;216426;216427	216427			18	
INNACFEAVVVTNTIPQEDK	1	Unmodified	2261.0998	0.099796984	1920	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.922	76.385	3	0.00025419	69569	160511_QHF_FH_JSI12i_1	57.806	53.7			0.26332	0.27789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26332	0.27789	NaN	1	1	Median	21839000	17523000	4315700	0	0	0	0	0	0	0	0	0	21839000	17523000	4315700	25520	1920	24167	159877	216428	216428			1	
INNAHTIGCNAVSWAPAVVPGSLIDHPSGQK	1	Unmodified	3209.604	0.60401472	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			79.745	78.372	4	0.00088182	64577	160511_QHF_FH_JSI9i_3	30.352	24.322			1.0924	1.0625	2.6024	2	0	Median	1.3103	1.0822	NaN	1	0	Median	0.91074	1.0431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87801000	46240000	41561000	40998000	20267000	20732000	46803000	25973000	20830000	0	0	0	0	0	0	25521	1860	24168	159878;159879	216429;216430;216431;216432;216433;216434	216434			6	
INNEIDQLMNQMQQIETQQR	0	Unmodified	2473.169	0.16895596	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	100.76	100.68	3	0.002692	91304	160511_QHF_FH_JSI10i_1	41.115	29.262			0.77805	0.857	8.1516	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77477	0.90785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78135	0.809	NaN	1	1	Median	82486000	55311000	27175000	0	0	0	47353000	27719000	19634000	0	0	0	35133000	27592000	7541200	25522	5479	24169	159880;159881	216435;216436;216437	216436			3	
INNEIDQLMNQMQQIETQQRK	1	Unmodified	2601.2639	0.26391897	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		93.356	93.144	3	7.2161E-06	82936	160511_QHF_FH_JSI11i_3	65.887	52.567			0.66755	0.78897	14.127	3	0	Median	0.93302	0.78897	NaN	1	0	Median	0.66755	0.80986	NaN	1	0	Median	0.66365	0.62651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	188110000	97905000	90201000	67150000	30516000	36634000	55293000	28472000	26820000	65664000	38918000	26746000	0	0	0	25523	5479	24170	159882;159883;159884	216438;216439;216440	216438			3	
INNFSADIK	1	Unmodified	1020.524	0.52400971	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	39.119	36.459	2	0.00075663	30998	160511_QHF_FH_JSI12i_2	85.731	55.546			0.89423	0.93544	35.267	10	4	Median	1.2636	1.0592	19.222	2	0	Median	0.82175	0.9905	59.791	3	1	Plateau	0.94654	0.94608	2.3749	2	1	Median	0.8823	0.94059	12.766	3	2	Median	4192200000	1947200000	2245000000	766880000	289150000	477720000	1135000000	552810000	582160000	1211400000	574880000	636500000	1079000000	530360000	548650000	25524	1039	24171	159885;159886;159887;159888;159889;159890;159891;159892;159893;159894	216441;216442;216443;216444;216445;216446;216447;216448;216449;216450;216451	216442			11	
INNVPAEGENEVNNELANR	0	Unmodified	2094.993	0.99302373	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	50.34	49.662	2;3	3.9592E-82	44745	160511_QHF_FH_JSI10i_1	242.43	224.76			0.94077	1.0626	9.2054	8	0	Median	1.402	1.1357	7.9675	2	0	Median	0.90921	1.0686	2.2559	2	0	Median	1.0304	0.99536	11.433	2	0	Median	0.90039	0.94626	3.1321	2	0	Median	2765200000	1333800000	1431400000	559630000	219830000	339800000	740110000	399520000	340590000	895810000	419740000	476070000	569640000	294730000	274910000	25525	5015	24172	159895;159896;159897;159898;159899;159900;159901;159902	216452;216453;216454;216455;216456;216457;216458;216459;216460;216461;216462;216463;216464;216465;216466;216467	216461			16	
INNWIVQLSK	1	Unmodified	1213.6819	0.68190733	2720	Q15853;P22415	USF2;USF1	Upstream stimulatory factor 2;Upstream stimulatory factor 1	yes	no	0	0	0	0	By MS/MS				3	0			1							1				72.536	71.059	2	0.0041055	58486	160511_QHF_FH_JSI9i_3	67.113	47.842			0.96701	0.79834	NaN	1	1	Median	0.96701	0.79834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70026000	35748000	34278000	70026000	35748000	34278000	0	0	0	0	0	0	0	0	0	25526	2720	24173	159903	216468	216468			1	
INPDEREEMK	1	Unmodified	1259.5816	0.58160094	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.2	0.4		4	1							1		1	3	15.163	14.609	2;3	0.00010706	11659	160511_QHF_FH_JSI11i_2	100.02	64.722			1.1404	1.2376	21.823	5	1	Median	1.5727	1.422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87003	0.9249	NaN	1	0	Median	1.1404	1.2376	20.029	3	0	Median	311080000	139590000	171500000	47308000	18242000	29066000	0	0	0	39054000	17513000	21541000	224720000	103830000	120890000	25527	1623	24174	159904;159905;159906;159907;159908	216469;216470;216471;216472;216473;216474	216473			6	
INPDGSQSVVEVPYAR	0	Unmodified	1729.8635	0.8635131	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	4.98	8	1					2			2	4	3	2	59.102	56.359	2;3	8.2117E-30	51267	160511_QHF_FH_JSI11i_1	184.21	158.09			1.1809	1.1552	16.22	10	0	Median	1.1899	0.96432	2.0727	2	0	Median	1.0626	1.2551	20.852	4	0	Median	1.1716	1.1358	6.7399	2	0	Median	1.2035	1.2498	8.4194	2	0	Median	4644800000	2273200000	2371600000	1204700000	500090000	704590000	1103400000	635500000	467870000	1025200000	508780000	516380000	1311600000	628850000	682790000	25528	5508	24175	159909;159910;159911;159912;159913;159914;159915;159916;159917;159918;159919	216475;216476;216477;216478;216479;216480;216481;216482;216483;216484;216485;216486;216487;216488;216489;216490	216476			16	
INPELNQK	1	Unmodified	954.51345	0.51344502	1772;1587	P46734;P52564	MAP2K3;MAP2K6	Dual specificity mitogen-activated protein kinase kinase 3;Dual specificity mitogen-activated protein kinase kinase 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	20.039	19.446	2	0.0014792	16920	160511_QHF_FH_JSI12i_1	88.942	60.43			1.1547	1.1683	11.3	5	3	Median	1.3693	1.1452	20.807	2	2	Median	0.97552	1.1683	NaN	1	1	Median	1.2703	1.2385	NaN	1	0	Median	1.0539	1.097	NaN	1	0	Median	596260000	261490000	334760000	147900000	57758000	90141000	128760000	60712000	68049000	170390000	62226000	108160000	149210000	80799000	68414000	25529	1587;1772	24176	159920;159921;159922;159923;159924	216491;216492;216493;216494;216495;216496;216497	216493			7	
INPENSK	1	Unmodified	800.40283	0.40283194	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.1791	6.8433	2	0.012047	4412	160511_QHF_FH_JSI9i_1	69.998	12.535			0.99087	1.0011	14.427	4	0	Median	1.3062	1.0757	NaN	1	0	Median	0.78618	0.9317	NaN	1	0	Median	1.203	1.1691	NaN	1	0	Median	0.81611	0.8466	NaN	1	0	Median	2065900000	1024500000	1041500000	578080000	274730000	303350000	481330000	273020000	208310000	475710000	208950000	266760000	530800000	267770000	263040000	25530	5497	24177	159925;159926;159927;159928	216498;216499;216500;216501;216502	216502			5	
INPLPGGR	0	Unmodified	822.47119	0.47118627	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.831	26.793	2	0.01468	22346	160511_QHF_FH_JSI12i_3	50.025	23.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25531	3499	24178	159929	216503	216503			1	
INPNTAYQK	1	Unmodified	1047.5349	0.53490874	3059;2912	Q5MIZ7;Q6IN85	SMEK2;SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3B;Serine/threonine-protein phosphatase 4 regulatory subunit 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		18.997	18.303	2	0.0035082	15634	160511_QHF_FH_JSI10i_1	60.019	35.096			0.79456	0.78071	33.142	2	1	Median	0.76294	0.61761	NaN	1	1	Median	0.82749	0.98688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80490000	41853000	38637000	26638000	15389000	11249000	53852000	26464000	27388000	0	0	0	0	0	0	25532	2912;3059	24179	159930;159931;159932	216504;216505;216506	216505			3	
INPSSMFDVHVK	1	Unmodified	1372.6809	0.68092105	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	2	1	1	62.49	61.904	3	0.013629	54830	160511_QHF_FH_JSI11i_3	26.112	13.234			0.92529	0.85589	13.734	5	3	Median	0.95345	0.82227	NaN	1	1	Median	0.64396	0.78925	17.899	2	2	Median	0.92529	0.85589	NaN	1	0	Median	1.0048	1.0144	NaN	1	0	Median	285560000	150380000	135180000	28595000	14151000	14444000	89680000	48265000	41415000	87468000	49514000	37954000	79814000	38446000	41368000	25533	992	24180	159933;159934;159935;159936;159937	216507;216508;216509;216510	216507			4	
INPTESTSK	1	Unmodified	975.48729	0.48728985	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.092	10.304	2	0.046856	7745	160511_QHF_FH_JSI9i_1	44.863	26.081			0.7874	0.65134	NaN	1	1	Median	0.7874	0.65134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94270000	64974000	29296000	94270000	64974000	29296000	0	0	0	0	0	0	0	0	0	25534	3668	24181	159938	216511	216511			1	
INPYMSSPCHIEMILTEK	1	Oxidation (M)	2178.0159	0.0159327	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	72.226	72.078	3	1.7692E-05	62455	160511_QHF_FH_JSI12i_3	80.975	72.585			1.8214	1.7407	36.118	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4786	1.3484	NaN	1	0	Median	2.2438	2.2472	NaN	1	0	Median	93901000	32869000	61032000	0	0	0	0	0	0	51760000	21829000	29931000	42141000	11040000	31102000	25535	1143	24182	159939;159940;159941	216512;216513;216514	216514		779	3	
INPYMSSPCHIEMILTEK	1	Unmodified	2162.021	0.021018078	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	81.181	80.632	2;3	3.1386E-07	71794	160511_QHF_FH_JSI11i_3	100.67	86.839			1.1775	1.2775	31.908	5	0	Median	NaN	NaN	NaN	0	0	Median	0.70301	0.84706	NaN	1	0	Median	1.151	1.1379	31.872	2	0	Median	1.46	1.5261	25.15	2	0	Median	1393900000	637410000	756510000	0	0	0	232100000	127600000	104500000	746320000	369970000	376350000	415510000	139840000	275670000	25536	1143	24182	159942;159943;159944;159945;159946;159947	216515;216516;216517;216518;216519;216520;216521;216522;216523;216524;216525	216516			10	
INQDPQVMLAPLISIALK	1	Unmodified	1963.1176	0.1176193	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	6	8	8							4	6	6	6	102.56	102.47	2;3	8.9736E-53	91029	160511_QHF_FH_JSI10i_2	218.4	203.2			1.0043	1.0329	7.8807	22	1	Median	1.1757	1.0016	4.7	4	0	Median	0.87538	1.073	10.58	6	0	Median	1.0043	1.0168	5.9346	6	1	Median	1.0311	1.0759	8.0326	6	0	Median	5195600000	2640900000	2554800000	620600000	283880000	336720000	1457600000	768940000	688670000	1610900000	840850000	770040000	1506500000	747180000	759340000	25537	1460	24183	159948;159949;159950;159951;159952;159953;159954;159955;159956;159957;159958;159959;159960;159961;159962;159963;159964;159965;159966;159967;159968;159969	216526;216527;216528;216529;216530;216531;216532;216533;216534;216535;216536;216537;216538;216539;216540;216541;216542;216543;216544;216545;216546;216547;216548;216549;216550;216551;216552;216553;216554;216555;216556;216557;216558;216559;216560;216561;216562;216563;216564;216565	216561			40	
INQGWLDSSR	0	Unmodified	1174.5731	0.57308516	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	39.58	38.515	2	0.0023996	33052	160511_QHF_FH_JSI11i_2	60.102	40.325			0.99732	1.0063	14.517	5	0	Linear	1.3371	1.1668	NaN	1	0	Median	1.0206	1.2091	17.439	2	0	Median	0.89482	0.9159	NaN	1	0	Median	0.99732	1.1258	NaN	1	0	Median	756250000	384470000	371780000	133350000	58909000	74439000	240490000	134530000	105950000	228120000	110650000	117470000	154300000	80376000	73921000	25538	3965	24184	159970;159971;159972;159973;159974	216566;216567;216568;216569;216570;216571	216570			6	
INQIQMK	1	Unmodified	873.47422	0.47422274	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	21.441	20.68	2	0.018889	16993	160511_QHF_FH_JSI11i_2	62.842	37.105			1.0651	1.1787	26.725	5	1	Median	1.3561	1.1931	NaN	1	0	Median	0.60268	0.72396	NaN	1	0	Median	1.3805	1.3953	NaN	1	0	Median	0.95365	1.0102	21.814	2	1	Median	701740000	344000000	357740000	127180000	50743000	76441000	92061000	46963000	45098000	172200000	81734000	90471000	310290000	164560000	145730000	25539	2456;2457	24185	159975;159976;159977;159978;159979	216572;216573	216573			2	
INQLSEENGDLSFK	1	Unmodified	1592.7682	0.76821574	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.122	52.367	2	1.3496E-09	46483	160511_QHF_FH_JSI9i_1	142.83	108.14			0.98126	0.90269	22.004	3	1	Plateau	1.0172	0.82941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98126	0.97753	NaN	1	0	Median	0.60787	0.63227	NaN	1	1	Median	414920000	233140000	181780000	132280000	69587000	62690000	0	0	0	132740000	65943000	66800000	149900000	97611000	52291000	25540	2587	24186	159980;159981;159982	216574;216575;216576;216577;216578	216576			5	
INQLYEQAK	1	Unmodified	1105.5768	0.57677356	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	24.134	23.502	2	0.00015606	20603	160511_QHF_FH_JSI10i_1	88.819	23.573			0.98651	0.96442	30.883	7	2	Median	1.2029	1.0027	21.638	2	0	Median	0.76227	0.9283	5.3982	2	1	Median	0.67871	0.6757	50.358	2	1	Median	1.1399	1.1928	NaN	1	0	Median	926620000	474570000	452050000	182380000	94885000	87500000	243230000	141350000	101880000	191580000	107000000	84581000	309430000	131340000	178090000	25541	3965	24187	159983;159984;159985;159986;159987;159988;159989	216579;216580;216581;216582;216583;216584;216585;216586;216587;216588;216589	216583			11	
INQLYEQAR	0	Unmodified	1133.5829	0.58292157	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		26.554	25.918	2	0.059279	22624	160511_QHF_FH_JSI10i_2	33.797	0.41876			0.81119	0.89219	14.603	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65693	0.80466	NaN	1	0	Median	1.0017	0.98924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64786000	34074000	30713000	0	0	0	31677000	16965000	14712000	33110000	17109000	16001000	0	0	0	25542	4363	24188	159990;159991	216590	216590			1	
INQMATAPDSQR	0	Unmodified	1330.6299	0.62994811	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	18.033	17.551	2	7.0289E-07	14646	160511_QHF_FH_JSI9i_1	104.79	74.541			0.93464	0.96925	11.355	5	5	Linear	0.96718	0.80356	NaN	1	1	Median	0.66745	0.77189	NaN	1	1	Median	0.99859	0.97192	NaN	1	1	Median	0.85357	0.89199	13.314	2	2	Median	767410000	413850000	353560000	118980000	66817000	52166000	164960000	104110000	60855000	169430000	88494000	80938000	314040000	154440000	159600000	25543	5479	24189	159992;159993;159994;159995;159996;159997	216591;216592;216593;216594;216595;216596	216596			6	
INQNVAALPVASSVMDR	0	Unmodified	1783.9251	0.9250675	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.667	70.301	2	0.0049825	63923	160511_QHF_FH_JSI11i_1	71.176	41.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25544	4936	24190	159998	216597	216597			1	
INQQEEPGFEVITR	0	Unmodified	1658.8264	0.82639932	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		55.186	54.774	2	0.00021872	49700	160511_QHF_FH_JSI11i_1	106.38	83.738			1.021	1.0021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.021	1.0021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95074000	41667000	53407000	0	0	0	0	0	0	95074000	41667000	53407000	0	0	0	25545	3699	24191	159999	216598	216598			1	
INQVFHGSCITEGNELTK	1	Unmodified	2045.984	0.98403894	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	1	2	4	3	50.325	48.755	2;3	5.7484E-09	42148	160511_QHF_FH_JSI11i_2	131.71	122.92			0.90202	0.96866	28.048	10	2	Median	0.76076	0.65082	NaN	1	1	Median	0.91663	1.0681	0.044094	2	0	Median	0.78444	0.7777	11.237	4	1	Median	1.3168	1.3009	6.7624	3	0	Median	1565000000	713930000	851110000	88329000	47947000	40383000	235690000	132650000	103040000	693260000	291420000	401840000	547770000	241920000	305850000	25546	2094	24192	160000;160001;160002;160003;160004;160005;160006;160007;160008;160009	216599;216600;216601;216602;216603;216604;216605;216606;216607;216608;216609;216610;216611;216612;216613;216614;216615	216609			17	
INQYPESNAEYLAHLVPGAHVVK	1	Unmodified	2548.3074	0.30742199	3020	Q687X5	STEAP4	Metalloreductase STEAP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	74.942	74.305	3;4	4.3969E-10	65444	160511_QHF_FH_JSI11i_2	97.253	94.529			0.87027	0.85517	22.401	7	3	Median	0.87027	0.74064	NaN	1	0	Median	0.6971	0.84759	1.2591	2	1	Median	1.0858	1.0531	19.401	2	1	Median	0.90173	0.96258	40.284	2	1	Median	1537600000	846450000	691190000	95825000	55590000	40236000	270330000	159630000	110700000	461370000	215760000	245610000	710110000	415470000	294640000	25547	3020	24193	160010;160011;160012;160013;160014;160015;160016	216616;216617;216618;216619;216620;216621;216622;216623;216624;216625;216626;216627;216628;216629	216624			14	
INRLDLLITYLNTR	0	Unmodified	1716.9887	0.98865404	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				86.983	78.364	3	0.019493	43380	160513_QHF_FH_JSI9Kac_6	53.828	42.06			1.1793	1.0311	NaN	1	0	Median	1.1793	1.0311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36412000	18579000	17833000	36412000	18579000	17833000	0	0	0	0	0	0	0	0	0	25548	2575	24194	160017	216630	216630			0	
INSAPQQIEVFPPFR	0	Unmodified	1741.9152	0.91515474	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	82.612	81.946	2	5.7346E-05	72449	160511_QHF_FH_JSI9i_2	77.062	60.037			0.65876	0.80827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65876	0.80827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33419000	22010000	11409000	0	0	0	33419000	22010000	11409000	0	0	0	0	0	0	25549	3734	24195	160018;160019;160020;160021	216631;216632;216633;216634	216632			4	
INSDDSNLYLTASK	1	Unmodified	1539.7417	0.74166663	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.542	44.869	2	0.0011145	40191	160511_QHF_FH_JSI10i_1	80.469	57.149			1.1768	1.1663	26.684	4	2	Median	1.0846	0.88701	NaN	1	0	Median	0.93006	1.0824	NaN	1	1	Median	1.2768	1.2567	NaN	1	1	Median	1.5645	1.6712	NaN	1	0	Median	463400000	242210000	221190000	104830000	48407000	56420000	137230000	72370000	64858000	115080000	61942000	53141000	106260000	59495000	46767000	25550	4562	24196	160022;160023;160024;160025	216635;216636;216637;216638;216639;216640	216638			6	
INSFYAFEVK	1	Unmodified	1216.6128	0.61282471	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.2	5.93		1						1	2		2	1	1	73.559	66.444	2	0.0013014	58163	160511_QHF_FH_JSI12i_2	66.692	32.439			0.75315	0.85855	67.711	4	3	Median	NaN	NaN	NaN	0	0	Median	0.37509	0.4472	86.584	2	2	Median	1.0852	1.0673	NaN	1	1	Median	0.82046	0.89357	NaN	1	0	Median	136610000	76604000	60004000	0	0	0	36509000	23473000	13036000	43997000	17747000	26250000	56102000	35384000	20718000	25551	3733	24197	160026;160027;160028;160029	216641;216642;216643;216644;216645	216641			5	
INSGGKLPNFGFVVFDDSEPVQK	2	Unmodified	2493.254	0.25398944	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				92.658	91.558	3	0.0012203	74909	160511_QHF_FH_JSI9i_3	46.178	38.375			0.46137	0.3845	NaN	1	1	Median	0.46137	0.3845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13454000	9414200	4039900	13454000	9414200	4039900	0	0	0	0	0	0	0	0	0	25552	2381	24198	160030	216646;216647	216646			2	
INSHLPSHIR	0	Unmodified	1172.6414	0.6414395	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			48.079	46.513	2	0.011582	38852	160511_QHF_FH_JSI10i_3	46.462	7.6703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25553	5694	24199	160031	216648	216648			1	
INSITVDNCK	1	Unmodified	1162.5652	0.56522259	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	25.608	25.192	2	0.0016863	21961	160511_QHF_FH_JSI11i_1	68.525	42.42			1.206	1.3407	27.76	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93695	1.1017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5523	1.6314	NaN	1	0	Median	417530000	203340000	214200000	0	0	0	171760000	95246000	76512000	0	0	0	245770000	108090000	137680000	25554	2169	24200	160032;160033;160034	216649;216650	216649			2	
INSITVDNCKK	2	Unmodified	1290.6602	0.66018561	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.951	17.99	3	0.011365	14506	160511_QHF_FH_JSI12i_3	42.976	26.598			0.84257	0.86819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84257	0.86819	NaN	1	1	Median	25600000	11813000	13787000	0	0	0	0	0	0	0	0	0	25600000	11813000	13787000	25555	2169	24201	160035	216651	216651			1	
INSPNSKVNTLSK	2	Acetyl (K)	1442.7729	0.77290718	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.694	37.254	2	0.048887	21988	160513_QHF_FH_JSI11Kac_4	42.001	17.658			0.68376	0.67115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68376	0.67115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33700000	19536000	14164000	0	0	0	0	0	0	33700000	19536000	14164000	0	0	0	25556	1507	24202	160036	216652	216652			1	
INSQNQPTGIHREPPPPPFSVNK	1	Unmodified	2553.3088	0.30881898	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.847	43.247	4	0.035724	35354	160511_QHF_FH_JSI9i_3	24.896	17.784			1.4228	1.1908	NaN	1	1	Median	1.4228	1.1908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15873000	5638500	10234000	15873000	5638500	10234000	0	0	0	0	0	0	0	0	0	25557	2179	24203	160037	216653	216653			1	
INSSTENSDEGLK	1	Unmodified	1392.6369	0.63686721	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.672	15.228	2	1.7101E-05	12934	160511_QHF_FH_JSI12i_1	84.658	63.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25558	1311	24204	160038	216654	216654			1	
INSTATPDQDRDK	1	Unmodified	1459.6903	0.69029976	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	8.9745	8.5692	3	0.00097464	6118	160511_QHF_FH_JSI9i_1	57.095	39.286			1.0431	0.99389	9.0305	3	1	Median	1.3132	1.0897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0431	0.99389	NaN	1	0	Median	0.8833	0.90962	NaN	1	1	Median	400740000	170430000	230310000	119340000	41684000	77658000	0	0	0	153990000	63609000	90377000	127410000	65136000	62278000	25559	4673	24205	160039;160040;160041	216655;216656;216657	216656			3	
INSYGYGDHYIHIK	1	Unmodified	1678.8104	0.81035532	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	2	2	2	6	49.981	44.007	2;3;4	1.5218E-05	37845	160511_QHF_FH_JSI12i_3	75.764	63.788			1.1951	1.1372	26.465	11	1	Median	1.4894	1.2766	18.083	2	0	Median	1.0597	1.2515	19.584	2	1	Median	1.2603	1.2088	4.0766	2	0	Median	0.96837	1.0595	33.019	5	0	Median	572390000	240090000	332300000	30457000	12023000	18435000	34013000	19840000	14173000	138160000	52798000	85365000	369750000	155430000	214330000	25560	4062	24206	160042;160043;160044;160045;160046;160047;160048;160049;160050;160051;160052;160053	216658;216659;216660;216661;216662;216663;216664;216665;216666;216667;216668;216669;216670	216665			9	
INTESSLWSLEPGK	1	Unmodified	1559.7831	0.78313752	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			70.419	70.186	2	0.0013472	63590	160511_QHF_FH_JSI10i_1	60.301	43.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25561	3404	24207	160054	216671	216671			1	
INVDIPEEANQNLSFGATER	0	Unmodified	2216.0709	0.070939697	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	78.083	77.652	2	1.5778E-09	70746	160511_QHF_FH_JSI12i_1	143.38	120.8			1.0585	1.0452	27.362	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3066	1.2683	NaN	1	1	Median	0.85745	0.86134	NaN	1	0	Median	44324000	18893000	25431000	0	0	0	0	0	0	16466000	5276800	11189000	27859000	13616000	14242000	25562	4803	24208	160055;160056;160057	216672;216673;216674;216675	216675			4	
INVGIGEIK	1	Unmodified	941.55458	0.55458155	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	54.027	53.176	2	0.00033494	46949	160511_QHF_FH_JSI10i_2	82.645	36.219			1.2961	1.3152	14.808	5	0	Median	1.6812	1.4356	NaN	1	0	Median	1.0762	1.3284	NaN	1	0	Median	1.3099	1.2743	4.4753	2	0	Median	0.88837	0.97421	NaN	1	0	Median	818540000	389300000	429240000	151170000	57742000	93428000	208250000	101430000	106830000	276350000	123770000	152580000	182770000	106360000	76403000	25563	2958	24209	160058;160059;160060;160061;160062	216676;216677;216678;216679;216680	216680			5	
INVLAAQYQSLLNSYGEPVDDK	1	Unmodified	2436.2173	0.21726958	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	98.641	98.476	3	3.0969E-08	87201	160511_QHF_FH_JSI10i_2	92.098	78.083			0.91061	1.1216	21.841	4	0	Linear	0.86791	0.7499	NaN	1	0	Median	0.96862	1.1968	NaN	1	0	Median	1.0283	1.0652	NaN	1	0	Median	1.093	1.181	NaN	1	0	Median	95354000	44059000	51295000	30121000	13739000	16382000	29289000	13185000	16104000	21504000	9051600	12453000	14440000	8084100	6355500	25564	133	24210	160063;160064;160065;160066	216681;216682;216683;216684;216685;216686	216686			6	
INVLLQAFISQLK	1	Unmodified	1485.8919	0.89190011	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									9	4	1	4		96.972	88.424	2;3	8.1037E-40	50034	160513_QHF_FH_JSI11Kac_6	175.49	138.15			0.64677	0.41791	38.533	5	5	Linear	0.51045	0.44531	57.14	2	2	Median	0.59189	0.70371	NaN	1	1	Median	0.40353	0.38221	12.628	2	2	Median	NaN	NaN	NaN	0	0	Median	780330000	440390000	339930000	352930000	168420000	184500000	214490000	123290000	91202000	212910000	148680000	64228000	0	0	0	25565	552	24211	160067;160068;160069;160070;160071;160072;160073;160074;160075	216687;216688;216689;216690;216691;216692;216693;216694;216695	216689			9	
INVNEIFYDLVR	0	Unmodified	1493.7878	0.78782897	1946;2023	P61224;A6NIZ1;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59		6	1						1	2	3	2	1	100.91	99.881	2	2.973E-38	89770	160511_QHF_FH_JSI9i_2	172.61	136.09			0.88695	1.0137	9.0156	6	2	Median	1.1527	0.99144	NaN	1	0	Median	0.82967	1.0161	5.5208	3	2	Median	1.1772	1.2309	NaN	1	0	Median	0.9094	1.0114	NaN	1	0	Median	3835400000	1979000000	1856500000	476280000	277420000	198860000	1360300000	717720000	642610000	1048900000	481470000	567420000	949930000	502370000	447560000	25566	1946;2023	24212	160076;160077;160078;160079;160080;160081;160082;160083	216696;216697;216698;216699;216700;216701;216702;216703;216704;216705	216699			10	
INVSGLTTK	1	Unmodified	931.53385	0.53384611	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.42	3	4	1				2	4		3	4	4	3	42.915	38.003	2	0.00013513	32495	160511_QHF_FH_JSI12i_2	90.657	59.938			1.0519	1.1176	22.907	14	1	Median	1.3849	1.2063	27.325	3	0	Median	0.99452	1.1655	24.376	4	0	Median	1.0258	1.0081	23.681	4	1	Median	0.98898	1.1164	18.02	3	0	Median	1687200000	873930000	813230000	316360000	164150000	152210000	435300000	218910000	216390000	557850000	252790000	305060000	377660000	238090000	139570000	25567	1111	24213	160084;160085;160086;160087;160088;160089;160090;160091;160092;160093;160094;160095;160096;160097	216706;216707;216708;216709;216710;216711;216712;216713;216714;216715;216716;216717;216718;216719;216720	216708			14	
INVVNNHQAK	1	Unmodified	1135.6098	0.60980502	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	2	2	3	2	11.072	9.7667	2;3	1.1345E-05	7525	160511_QHF_FH_JSI12i_3	103.74	75.565			0.9624	0.93295	28.891	9	0	Median	1.2732	1.0514	16.904	2	0	Median	0.92759	1.0672	8.8385	2	0	Median	1.159	1.0955	45.2	3	0	Plateau	0.78063	0.7969	12.714	2	0	Median	1131700000	620560000	511130000	89777000	36789000	52989000	213600000	124020000	89579000	357450000	190970000	166480000	470870000	268780000	202080000	25568	4538	24214	160098;160099;160100;160101;160102;160103;160104;160105;160106	216721;216722;216723;216724;216725;216726;216727;216728;216729;216730;216731	216730			11	
INVYYNEAAGNK	1	Unmodified	1354.6517	0.65172941	2477	Q13885	TUBB2A	Tubulin beta-2A chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.611	36.003	2	0.00022646	32588	160511_QHF_FH_JSI12i_1	94.297	65.21			0.91206	0.93625	22.487	4	1	Median	0.80551	0.65188	NaN	1	0	Median	0.7724	0.86345	NaN	1	0	Median	1.0327	1.0152	NaN	1	0	Median	1.0488	1.0776	NaN	1	1	Median	131020000	67172000	63847000	18736000	13433000	5302500	33159000	19100000	14060000	44818000	20505000	24313000	34305000	14134000	20171000	25569	2477	24215	160107;160108;160109;160110	216732;216733;216734	216733			3	
INVYYNEATGGK	1	Unmodified	1327.6408	0.64083038	2075	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.28	4	4	4			3	3	4	2	5	7	6	6	43.359	38.053	2	1.8474E-12	21307	160513_QHF_FH_JSI10Kac_4	129.16	107.07			1.0597	1.0707	20.207	24	3	Median	1.1566	0.97426	13.274	5	0	Median	0.9237	1.1057	21.039	7	1	Median	1.0356	0.97586	17.231	6	1	Median	1.0597	1.1057	23.292	6	1	Median	15359000000	7250900000	8108200000	3286600000	1461500000	1825100000	4439400000	2101200000	2338300000	4135600000	1954600000	2181000000	3497300000	1733600000	1763700000	25570	2075	24216	160111;160112;160113;160114;160115;160116;160117;160118;160119;160120;160121;160122;160123;160124;160125;160126;160127;160128;160129;160130;160131;160132;160133;160134	216735;216736;216737;216738;216739;216740;216741;216742;216743;216744;216745;216746;216747;216748;216749;216750;216751;216752;216753;216754;216755;216756;216757;216758;216759;216760;216761;216762;216763;216764;216765;216766;216767;216768;216769;216770;216771;216772;216773;216774;216775;216776;216777;216778;216779;216780;216781;216782;216783;216784;216785	216751			50	
INVYYNEATGGKYVPR	1	Acetyl (K)	1884.937	0.9370124	2075	P68371	TUBB4B	Tubulin beta-4B chain	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.49								9	6	3	3	3	6	71.185	61.248	2;3	6.9655E-43	33801	160513_QHF_FH_JSI10Kac_6	182.02	166.63			0.88201	0.93463	61.904	13	2	Median	1.0118	0.86329	17.741	2	0	Median	0.81256	0.97549	8.2398	3	0	Median	0.88845	0.875	65.982	3	1	Median	0.82695	0.9306	90.771	5	1	Median	240550000	124030000	116530000	51917000	19708000	32210000	40891000	18562000	22328000	82605000	50457000	32148000	65141000	35299000	29842000	25571	2075	24217	160135;160136;160137;160138;160139;160140;160141;160142;160143;160144;160145;160146;160147;160148;160149	216786;216787;216788;216789;216790;216791;216792;216793;216794;216795;216796;216797;216798;216799;216800;216801;216802;216803;216804;216805	216805	2162		20	
INVYYNESSSQK	1	Unmodified	1430.6678	0.66777341	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.96	5	4	1			2	3	1		5	4	4	3	33.941	29.097	2	1.7621E-07	27762	160511_QHF_FH_JSI11i_1	133.81	113.11			0.98042	1.0312	28.192	15	1	Median	1.1685	0.9574	13.336	4	0	Median	0.7915	1.0441	7.2483	4	0	Linear	0.92238	0.92915	53.731	4	1	Median	1.0045	1.0741	5.1519	3	0	Median	2029300000	1000400000	1028800000	377780000	177790000	199990000	524640000	237050000	287600000	695250000	371310000	323950000	431590000	214290000	217300000	25572	4440	24218	160150;160151;160152;160153;160154;160155;160156;160157;160158;160159;160160;160161;160162;160163;160164;160165	216806;216807;216808;216809;216810;216811;216812;216813;216814;216815;216816;216817;216818;216819;216820;216821;216822;216823;216824;216825;216826;216827;216828;216829;216830;216831;216832;216833;216834;216835;216836;216837;216838	216806			33	
INYTEGR	0	Unmodified	851.41373	0.41373097	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.3	4	4	1			1	3	3		2	4	5	5	14.702	10.453	2	0.0078603	9882	160511_QHF_FH_JSI12i_1	74.439	39.333			0.89758	0.92865	21.283	15	0	Median	1.0928	0.90529	13.535	2	0	Median	0.84646	1.0098	29.154	4	0	Median	0.79895	0.81172	13.464	5	0	Median	0.8892	0.97425	15.38	4	0	Median	13790000000	6532800000	7257700000	3099600000	1345100000	1754500000	4681500000	2198000000	2483500000	4533700000	2271300000	2262400000	1475700000	718350000	757320000	25573	856	24219	160166;160167;160168;160169;160170;160171;160172;160173;160174;160175;160176;160177;160178;160179;160180;160181	216839;216840;216841;216842;216843;216844;216845;216846;216847;216848;216849;216850;216851;216852;216853;216854	216841			16	
INYTINIMELK	1	Oxidation (M)	1366.7166	0.71663786	1531	P42262	GRIA2	Glutamate receptor 2	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	19.951	19.965	3	0.01598	16247	160511_QHF_FH_JSI12i_3	31.431	18.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25574	1531	24220	160182	216855	216855		1205	1	
INYTYMLTR	0	Unmodified	1173.5852	0.58522975	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0		By MS/MS			15.5	0.5								1	1		2			67.349	58.005	2	0.053376	31829	160513_QHF_FH_JSI10Kac_6	37.191	24.965			0.86838	1.016	2.2576	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86838	1.016	2.2576	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51210000	28159000	23051000	0	0	0	51210000	28159000	23051000	0	0	0	0	0	0	25575	264	24221	160183;160184	216856	216856			1	
IPAANILGHENK	1	Unmodified	1275.6935	0.69353465	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	34.411	33.895	3	2.8079E-05	28519	160511_QHF_FH_JSI12i_3	69.352	65.335			0.91561	0.85807	11.483	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.91561	1.0573	NaN	1	1	Median	0.95129	0.91358	NaN	1	0	Median	0.8169	0.84305	NaN	1	0	Median	728950000	379770000	349180000	0	0	0	41637000	22634000	19003000	242860000	128160000	114700000	444460000	228970000	215480000	25576	1277	24222	160185;160186;160187	216857;216858;216859;216860	216859			4	
IPAASAAAMNLASAR	0	Unmodified	1413.7398	0.73983292	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		53.746	53.339	3	0.010548	48058	160511_QHF_FH_JSI10i_1	29.341	21.616			0.87525	0.91267	17.683	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7055	0.8054	NaN	1	0	Median	1.0858	1.0342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60085000	30172000	29912000	0	0	0	29684000	18634000	11050000	30401000	11538000	18862000	0	0	0	25577	5474	24223	160188;160189	216861	216861			1	
IPADTFAALK	1	Unmodified	1045.5808	0.5807963	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	55.053	54.377	2	0.013089	49092	160511_QHF_FH_JSI10i_1	44.377	23.895			0.88401	1.0065	9.9521	6	0	Linear	0.91035	0.75413	NaN	1	0	Median	0.70084	0.83677	11.88	2	0	Median	0.93072	0.93661	3.6322	2	0	Median	0.85843	0.8846	NaN	1	0	Median	653340000	344740000	308600000	62949000	31487000	31462000	187330000	111080000	76244000	322560000	162550000	160020000	80499000	39625000	40873000	25578	1600	24224	160190;160191;160192;160193;160194;160195	216862;216863;216864;216865	216863			4	
IPAEANPLADHVSATR	0	Unmodified	1660.8533	0.85328277	5092	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.827	41.716	3	0.014869	36595	160511_QHF_FH_JSI11i_3	34.721	24.664			1.0147	0.99758	2.1535	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0278	0.9825	NaN	1	0	Median	1.0017	1.0129	NaN	1	1	Median	140500000	71459000	69039000	0	0	0	0	0	0	55681000	28470000	27211000	84817000	42989000	41829000	25579	5092	24225	160196;160197	216866;216867;216868	216867			3	
IPAFLNVVDIAGLVK	1	Unmodified	1567.9338	0.93376492	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.08		14	12						10	8	8	10	10	101.14	98.8	2;3	1.8825E-12	89179	160511_QHF_FH_JSI12i_3	112.42	91.566			0.94594	0.92925	20.429	19	19	Median	1.0513	0.88305	20.505	5	5	Median	0.69785	0.82204	28.986	4	4	Median	1.1246	1.0822	21.167	5	5	Median	0.98633	1.0457	9.8364	5	5	Median	5149600000	2639400000	2510200000	929850000	484300000	445550000	850740000	465340000	385400000	1688000000	858280000	829720000	1681000000	831490000	849510000	25580	4992	24226	160198;160199;160200;160201;160202;160203;160204;160205;160206;160207;160208;160209;160210;160211;160212;160213;160214;160215;160216;160217;160218;160219;160220;160221;160222;160223;160224;160225;160226;160227;160228;160229;160230;160231;160232;160233	216869;216870;216871;216872;216873;216874;216875;216876;216877;216878;216879;216880;216881;216882;216883;216884;216885;216886;216887;216888;216889;216890;216891;216892;216893;216894;216895;216896;216897;216898;216899;216900;216901;216902;216903;216904	216898			36	
IPAGLCATAIDILTTVVR	0	Unmodified	1883.055	0.055019043	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	102.81	102.78	3	2.2528E-31	89608	160511_QHF_FH_JSI12i_3	169.09	158.89			1.0917	1.1238	28.011	4	0	Median	1.8398	1.6174	NaN	1	0	Median	0.78101	0.95669	NaN	1	0	Median	0.91288	0.88856	NaN	1	0	Median	1.3055	1.32	NaN	1	0	Median	329510000	147720000	181800000	12909000	5190700	7718500	21281000	11084000	10196000	62705000	27294000	35411000	232620000	104150000	128470000	25581	4193	24227	160234;160235;160236;160237	216905;216906	216906			2	
IPAHQVLYSTSGENASGK	1	Unmodified	1857.9221	0.92209062	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.41		5	6					1	2	4	3	4	3	30.421	27.79	2;3	1.2037E-41	23911	160511_QHF_FH_JSI11i_3	164.53	140.7			0.9657	0.93145	10.928	13	2	Median	0.97333	0.82177	22.616	3	1	Median	0.69492	0.84831	6.7496	3	1	Median	0.97405	0.95722	2.3671	4	0	Median	0.93467	0.93145	3.9374	3	0	Plateau	1062700000	525480000	537260000	165950000	77633000	88315000	180160000	103990000	76169000	314530000	147890000	166640000	402100000	195960000	206140000	25582	5161	24228	160238;160239;160240;160241;160242;160243;160244;160245;160246;160247;160248;160249;160250;160251	216907;216908;216909;216910;216911;216912;216913;216914;216915;216916;216917;216918;216919;216920;216921;216922;216923;216924;216925;216926;216927;216928;216929;216930;216931;216932	216909			26	
IPALDLLIK	1	Unmodified	994.64267	0.64266828	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	3	2	2	89.65	89.079	2	0.00092686	78668	160511_QHF_FH_JSI9i_2	71.501	32.709			1.0773	1.1721	13.919	9	0	Median	1.1204	0.92824	1.7552	2	0	Median	0.94665	1.1935	17.864	3	0	Plateau	1.2061	1.2057	1.6908	2	0	Median	1.0493	1.1793	0.87282	2	0	Median	1505500000	742160000	763320000	306970000	130610000	176360000	381360000	209230000	172130000	439420000	208460000	230950000	377750000	193870000	183880000	25583	2094	24229	160252;160253;160254;160255;160256;160257;160258;160259;160260	216933;216934;216935;216936;216937;216938;216939;216940;216941;216942;216943;216944;216945	216938			13	
IPAMTIAK	1	Unmodified	843.48881	0.48881017	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.91	2	3	4					1		3	2	2	3	38.719	36.938	1;2	0.00821	31065	160511_QHF_FH_JSI10i_3	57.177	27.839			0.97228	0.94188	35.619	10	1	Median	1.2617	1.018	27.481	3	1	Plateau	0.8131	0.94188	11.997	2	0	Median	1.0107	0.95377	39.39	2	0	Median	1.0707	1.054	61.291	3	0	Median	4825200000	2212000000	2613100000	1627900000	649040000	978900000	373310000	204610000	168700000	393850000	206540000	187310000	2430100000	1151800000	1278200000	25584	980	24230	160261;160262;160263;160264;160265;160266;160267;160268;160269;160270	216946;216947;216948;216949;216950;216951;216952;216953;216954;216955	216952			9	
IPANQLAELWLK	1	Unmodified	1394.7922	0.79218606	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	93.135	92.762	2	0.037148	81453	160511_QHF_FH_JSI11i_2	44.425	32.559			1.0488	1.0067	13.98	5	0	Median	1.0553	0.90779	NaN	1	0	Median	0.74431	0.91757	NaN	1	0	Median	1.0488	1.0569	NaN	1	0	Median	1.0577	1.1359	17.069	2	0	Median	364920000	201530000	163380000	44057000	19983000	24074000	71697000	48752000	22945000	88881000	49974000	38907000	160280000	82825000	77458000	25585	5161	24231	160271;160272;160273;160274;160275	216956;216957;216958;216959;216960	216958			5	
IPAVGGK	1	Unmodified	640.39081	0.39081069	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	1	1	2	21.186	20.77	2	0.042081	17738	160511_QHF_FH_JSI11i_1	46.351	20.242			0.97128	1.1364	29.003	5	0	Median	2.0921	1.7473	NaN	1	0	Median	0.97128	1.1364	NaN	1	0	Median	0.91593	0.89658	NaN	1	0	Median	0.94156	0.97315	22.325	2	0	Median	1393900000	673690000	720190000	205930000	77601000	128330000	361370000	195370000	165990000	345630000	179980000	165650000	480950000	220730000	260220000	25586	3021	24232	160276;160277;160278;160279;160280	216961;216962;216963	216961			3	
IPAYFVTVSDPAVPPGEDPDGR	0	Unmodified	2298.1168	0.11682726	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	83.019	82.868	2;3	0.00018161	75186	160511_QHF_FH_JSI11i_1	54.225	45.937			1.8138	2.1298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8138	2.1298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16565000	3714700	12850000	0	0	0	16565000	3714700	12850000	0	0	0	0	0	0	25587	1283	24233	160281;160282;160283	216964;216965;216966;216967	216964			4	
IPDEFDNDPILVQQLR	0	Unmodified	1910.9738	0.97379183	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			85.491	85.007	3	5.5414E-05	75635	160511_QHF_FH_JSI9i_1	74.966	64.179			1.2523	1.2314	6.8926	2	1	Median	1.4498	1.1728	NaN	1	0	Median	1.0817	1.2929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123630000	59920000	63713000	68975000	27516000	41459000	54658000	32404000	22254000	0	0	0	0	0	0	25588	2825	24234	160284;160285	216968;216969;216970	216969			3	
IPDEFDNDPILVQQLRR	0	Unmodified	2067.0749	0.074902863	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			76.194	75.439	3	0.031689	67214	160511_QHF_FH_JSI10i_2	28.212	19.503			1.532	1.5551	1.9664	2	2	Median	1.8093	1.5337	NaN	1	1	Median	1.2971	1.5769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66380000	27677000	38703000	29558000	13088000	16470000	36822000	14589000	22233000	0	0	0	0	0	0	25589	2825	24235	160286;160287	216971;216972	216972			2	
IPDEIIDMVK	1	Unmodified	1171.6159	0.61586118	5643	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.2	0.4	4	1								1	1	2	1	75.403	74.886	2	0.010307	67911	160511_QHF_FH_JSI11i_1	47.187	31.927			0.78692	0.78479	23.469	5	1	Median	0.78692	0.65868	NaN	1	0	Median	0.72656	0.85364	NaN	1	1	Median	0.95124	0.9746	30.634	2	0	Median	0.70313	0.71856	NaN	1	0	Median	349110000	196600000	152510000	66646000	40104000	26542000	72986000	45240000	27746000	141220000	68937000	72279000	68263000	42322000	25940000	25590	5643	24236	160288;160289;160290;160291;160292	216973;216974;216975;216976	216973			4	
IPDPEAVKPDDWDEDAPAK	2	Unmodified	2106.9746	0.9745797	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.214	57.562	3	4.0894E-08	52061	160511_QHF_FH_JSI10i_1	106.94	98.296			0.93614	1.0434	14.18	4	0	Linear	0.93252	0.76263	NaN	1	0	Median	0.78082	0.92412	NaN	1	0	Median	1.1019	1.0542	NaN	1	0	Median	0.93978	0.99961	NaN	1	0	Median	3389000000	1634600000	1754300000	601140000	297160000	303970000	840060000	452140000	387910000	1004200000	453200000	550970000	943610000	432130000	511480000	25591	1299	24237	160293;160294;160295;160296	216977;216978;216979;216980;216981;216982;216983;216984;216985;216986;216987;216988;216989;216990;216991;216992;216993;216994;216995;216996	216988			20	
IPDQLVILDMK	1	Unmodified	1283.7159	0.71590958	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	84.509	84.004	2	0.00079841	76843	160511_QHF_FH_JSI12i_1	68.355	68.355			0.87764	0.89908	18.506	8	1	Median	1.0165	0.89565	NaN	1	0	Median	0.73186	0.89104	4.4186	2	0	Median	0.90903	0.89166	1.7138	2	0	Median	0.90933	0.95368	33.185	3	1	Plateau	965710000	513170000	452540000	100420000	41184000	59240000	288960000	173810000	115150000	303780000	155770000	148010000	272540000	142410000	130130000	25592	1678	24238	160297;160298;160299;160300;160301;160302;160303;160304	216997;216998;216999;217000;217001;217002;217003;217004;217005;217006;217007;217008	217003			12	
IPDWFLNR	0	Unmodified	1059.5502	0.55016488	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	72.858	72.107	2	0.00037462	64217	160511_QHF_FH_JSI11i_3	110.36	58.509			0.88769	0.92595	7.4923	7	1	Median	1.0839	0.90355	NaN	1	0	Median	0.81966	0.97812	7.0377	2	0	Median	0.941	0.93184	0.89638	2	1	Median	0.78328	0.8428	7.3603	2	0	Median	9177000000	4510900000	4666100000	594780000	232500000	362280000	2332800000	1137800000	1195000000	3302100000	1699600000	1602600000	2947300000	1441000000	1506300000	25593	1993	24239	160305;160306;160307;160308;160309;160310;160311;160312	217009;217010;217011;217012;217013;217014;217015;217016;217017;217018;217019;217020;217021;217022;217023;217024;217025;217026;217027;217028;217029;217030;217031	217011			23	
IPEAPAGPPSDFGLFLSDDDPKK	2	Unmodified	2412.1849	0.18490682	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		87.995	87.635	3	0.012662	79783	160511_QHF_FH_JSI11i_1	32.491	16.899			1.6281	1.5802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6281	1.5802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15699000	6890000	8808700	0	0	0	0	0	0	15699000	6890000	8808700	0	0	0	25594	5616	24240	160313	217032	217032			1	
IPEDQHALLVK	1	Unmodified	1261.703	0.7030367	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.438	35.015	3	0.025448	29795	160511_QHF_FH_JSI11i_2	27.914	13.038			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25595	615	24241	160314	217033	217033			1	
IPEFIAFR	0	Unmodified	991.5491	0.54910224	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	73.597	72.843	2	0.039164	63210	160511_QHF_FH_JSI12i_2	39.663	20.88			0.94731	0.99951	18.421	5	0	Median	1.1893	1.0475	NaN	1	0	Median	0.83125	0.99951	NaN	1	0	Median	0.94731	0.9343	NaN	1	0	Median	0.94614	1.0002	35.924	2	0	Median	232070000	101760000	130310000	31161000	12801000	18360000	56334000	29042000	27292000	64212000	24562000	39650000	80366000	35359000	45007000	25596	2592	24242	160315;160316;160317;160318;160319	217034	217034			1	
IPEFNMAAFTTTLQHHK	1	Unmodified	1984.9829	0.98291673	5546	Q9Y2Y0	ARL2BP	ADP-ribosylation factor-like protein 2-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.723	79.997	4	8.8486E-07	71181	160511_QHF_FH_JSI11i_3	112.34	104.64			0.72803	0.90132	23.747	4	0	Linear	1.3125	1.0713	NaN	1	0	Median	0.97106	1.143	NaN	1	0	Median	0.7706	0.71587	NaN	1	0	Median	0.75448	0.75834	NaN	1	0	Median	277200000	146670000	130530000	31333000	13547000	17786000	44574000	22339000	22235000	94548000	42917000	51631000	106750000	67866000	38882000	25597	5546	24243	160320;160321;160322;160323	217035;217036;217037;217038;217039;217040;217041	217035			7	
IPEGASLAMSLIDKK	2	Unmodified	1571.8593	0.85927935	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	80.156	79.915	3	0.021334	69407	160511_QHF_FH_JSI12i_3	36.193	25.249			1.3927	1.4272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3927	1.4272	NaN	1	1	Median	15543000	7161200	8382200	0	0	0	0	0	0	0	0	0	15543000	7161200	8382200	25598	5622	24244	160324	217042	217042			1	
IPEGLFDPSNVK	1	Unmodified	1314.682	0.68196691	758	O96019	ACTL6A	Actin-like protein 6A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.949	64.335	2	0.0083933	58328	160511_QHF_FH_JSI10i_1	50.034	29.73			1.0671	1.0286	6.2057	4	0	Median	1.2323	1.0049	NaN	1	0	Median	0.83048	0.974	NaN	1	0	Median	1.1395	1.1234	NaN	1	0	Median	0.99925	1.0529	NaN	1	0	Median	598650000	309670000	288980000	132250000	63509000	68737000	146740000	81046000	65692000	178980000	91744000	87239000	140680000	73367000	67313000	25599	758	24245	160325;160326;160327;160328	217043;217044;217045	217044			3	
IPEGTILTMDMLTVK	1	Unmodified	1660.878	0.87796588	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	98.926	98.76	2;3	4.1433E-05	85049	160511_QHF_FH_JSI12i_2	91.441	79.749			0.96806	0.99859	9.3567	7	2	Median	1.1241	0.94038	NaN	1	1	Median	0.80671	0.98845	1.4429	2	0	Median	0.92395	0.92255	16.876	2	1	Median	0.97019	1.0638	3.5719	2	0	Median	421280000	209670000	211610000	64256000	28873000	35383000	93385000	52741000	40644000	136210000	69646000	66568000	127420000	58413000	69012000	25600	4943	24246	160329;160330;160331;160332;160333;160334;160335;160336	217046;217047;217048;217049;217050;217051;217052;217053;217054;217055;217056;217057;217058	217047			13	
IPEIHFPLESK	1	Unmodified	1308.7078	0.70778773	14	A2RUS2	DENND3	DENN domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	69.863	68.811	3	0.037541	59448	160511_QHF_FH_JSI12i_2	29.807	14.931			1.8348	2.0632	51.506	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2144	1.4334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.7721	2.9697	NaN	1	1	Median	43230000	18751000	24479000	0	0	0	17242000	11020000	6222100	0	0	0	25988000	7731400	18257000	25601	14	24247	160337;160338	217059;217060	217059			2	
IPEINSSDMSAHVTSPSGR	0	Unmodified	1983.932	0.93200337	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.99	3	4	2					1		1	2	5	2	48.112	46.485	3	7.3449E-07	41221	160511_QHF_FH_JSI11i_3	97.058	86.573			1.0189	1.0348	7.8607	10	4	Median	1.3566	1.1651	NaN	1	0	Median	0.88667	1.0575	15.311	2	0	Median	1.0348	1.0163	5.4559	5	4	Median	1.0189	1.0894	6.0817	2	0	Median	2535600000	1264900000	1270700000	295470000	131610000	163860000	530880000	292810000	238070000	1085300000	531340000	553930000	624000000	309120000	314880000	25602	512	24248	160339;160340;160341;160342;160343;160344;160345;160346;160347;160348	217061;217062;217063;217064;217065;217066;217067;217068;217069;217070;217071;217072;217073;217074	217062			14	
IPEINSSDMSAHVTSPSGR	0	Oxidation (M)	1999.9269	0.926918	512	O75369	FLNB	Filamin-B	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	33.024	32.978	3	5.0769E-05	27782	160511_QHF_FH_JSI12i_3	65.47	61.566			1.186	1.1448	8.1424	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2023	1.0807	NaN	1	0	Median	1.1699	1.2126	NaN	1	0	Median	73785000	29953000	43832000	0	0	0	0	0	0	34240000	12163000	22077000	39545000	17789000	21755000	25603	512	24248	160349;160350	217075;217076	217076		188	2	
IPEIPADVVGALLFLEDYVR	0	Unmodified	2228.2093	0.20927108	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.99	97.273	3	7.5335E-22	57555	160513_QHF_FH_JSI10Kac_6	147.16	137.6			0.77824	0.92759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77824	0.92759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97981000	56900000	41080000	0	0	0	97981000	56900000	41080000	0	0	0	0	0	0	25604	2302	24249	160351	217077	217077			1	
IPEISIQDMTAQVTSPSGK	1	Unmodified	2001.0089	0.0088567119	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	8	2	2							2	4	3	3	84.762	84.332	2;3	2.916E-24	76674	160511_QHF_FH_JSI10i_1	213.83	188.98			1.0074	1.0174	36.486	10	2	Median	1.2128	1.0056	0.84908	2	0	Median	0.89518	1.0625	49.957	3	1	Median	1.0061	0.96853	51.126	3	1	Plateau	0.98895	1.0369	1.8993	2	0	Median	3093200000	1570700000	1522500000	683430000	325110000	358320000	789630000	416100000	373520000	822030000	425220000	396810000	798150000	404280000	393860000	25605	1192	24250	160352;160353;160354;160355;160356;160357;160358;160359;160360;160361;160362;160363	217078;217079;217080;217081;217082;217083;217084;217085;217086;217087;217088;217089;217090;217091;217092;217093;217094;217095;217096;217097;217098;217099;217100;217101;217102;217103;217104;217105;217106;217107;217108;217109;217110;217111;217112	217096			35	
IPEIWEGHNIADYIDPAIMK	1	Unmodified	2324.1511	0.15110427	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	101.14	101.01	3	3.1293E-05	88692	160511_QHF_FH_JSI11i_2	81.807	65.865			1.0092	1.0053	8.4153	4	3	Median	1.1757	1.0011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96095	0.97849	4.4277	2	2	Median	1.0332	1.1558	NaN	1	0	Median	1036300000	518730000	517520000	146310000	92982000	53327000	0	0	0	609780000	302210000	307570000	280170000	123540000	156630000	25606	4559	24251	160364;160365;160366;160367	217113;217114;217115;217116	217116			4	
IPELGGK	1	Unmodified	712.41194	0.41194006	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	1	2	3	19.626	19.161	2	0.0098491	16278	160511_QHF_FH_JSI11i_1	77.374	36.688			0.80329	0.84647	18.809	5	1	Linear	1.2015	0.99495	NaN	1	0	Median	0.75227	0.87643	NaN	1	0	Median	1.0944	1.0943	22.27	2	0	Median	1.2884	1.3254	NaN	1	1	Median	1079200000	507730000	571430000	190850000	77338000	113510000	339720000	165750000	173980000	376270000	181710000	194560000	172320000	82940000	89385000	25607	3647	24252	160368;160369;160370;160371;160372;160373;160374	217117;217118;217119;217120;217121;217122;217123;217124;217125;217126;217127	217117			11	
IPELLASGMVDNMTK	1	Unmodified	1617.8106	0.8106146	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.494	11	8								4	4	5	6	82.595	82.002	2;3	2.9841E-10	72040	160511_QHF_FH_JSI11i_2	143.46	135.73			1.2765	1.4474	62.824	19	18	Median	1.1883	0.97241	69.637	4	4	Median	0.29628	0.36107	62.257	4	4	Linear	0.9328	0.95562	62.955	5	4	Median	1.4083	1.5264	75.458	6	6	Median	1409000000	750300000	658710000	209790000	79153000	130630000	320440000	181430000	139010000	443880000	225960000	217920000	434910000	263760000	171150000	25608	1363	24253	160375;160376;160377;160378;160379;160380;160381;160382;160383;160384;160385;160386;160387;160388;160389;160390;160391;160392;160393	217128;217129;217130;217131;217132;217133;217134;217135;217136;217137;217138;217139;217140;217141;217142;217143;217144;217145;217146;217147;217148;217149;217150	217146			23	
IPEMHLK	1	Unmodified	866.46841	0.46840908	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	27.237	26.444	3	0.0073159	22931	160511_QHF_FH_JSI10i_2	47.849	25.717			0.85256	0.82112	67.537	5	1	Median	0.93864	0.82112	NaN	1	0	Median	0.54279	0.66425	NaN	1	0	Median	1.7344	1.7315	99.496	2	1	Median	0.72413	0.81467	NaN	1	0	Median	238700000	111960000	126740000	33465000	16649000	16817000	31937000	21679000	10257000	143890000	57726000	86159000	29409000	15905000	13503000	25609	2286	24254	160394;160395;160396;160397;160398;160399;160400;160401;160402	217151;217152;217153;217154;217155;217156;217157	217156			7	
IPEMHLKAPK	2	Acetyl (K)	1204.6638	0.66381443	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.79	42.07	3	0.016077	22802	160513_QHF_FH_JSI11Kac_6	47.559	31.026			0.16486	0.1565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16486	0.1565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9819900	8322200	1497800	0	0	0	0	0	0	9819900	8322200	1497800	0	0	0	25610	2286	24255	160403	217158	217158	2403		1	
IPENEVPAPVKPVTDSTSAPAPK	2	Unmodified	2343.2322	0.23219137	2711	Q15811	ITSN1	Intersectin-1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		51.239	50.827	3	0.048536	46079	160511_QHF_FH_JSI11i_1	25.408	4.7828		+	1.8678	1.8152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8678	1.8152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42893000	10195000	32699000	0	0	0	0	0	0	42893000	10195000	32699000	0	0	0	25611	2711	24256	160404	217159	217159			1	
IPEQIIVVDSSMVENEVIK	1	Unmodified	2141.129	0.12897185	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	99.484	99.384	3	0.00060591	89939	160511_QHF_FH_JSI10i_1	56.017	41.856			1.0975	1.0805	59.369	3	2	Median	NaN	NaN	NaN	0	0	Median	0.45435	0.49559	NaN	1	1	Median	1.6521	1.5895	NaN	1	1	Median	1.0975	1.0805	NaN	1	0	Median	30430000	14579000	15850000	0	0	0	11533000	7054200	4479000	7668600	2532900	5135700	11228000	4992400	6235400	25612	2305	24257	160405;160406;160407	217160;217161;217162;217163	217163			4	
IPEQSVLLLHACAHNPTGVDPRPEQWK	1	Unmodified	3091.5662	0.56617265	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		68.406	68.406	5	0.042234	61103	160511_QHF_FH_JSI11i_3	17.158	14.992			0.60198	0.56845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60198	0.56845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	192160000	85294000	106870000	0	0	0	0	0	0	192160000	85294000	106870000	0	0	0	25613	773	24258	160408	217164;217165	217165			2	
IPETLEEDQQFMLK	1	Unmodified	1719.8389	0.83893784	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			71.581	71.367	3	0.016691	64660	160511_QHF_FH_JSI10i_1	52.821	45.782			1.2073	1.4137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2073	1.4137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42104000	18646000	23458000	0	0	0	42104000	18646000	23458000	0	0	0	0	0	0	25614	5285	24259	160409	217166	217166			0	
IPETYPFNPPK	1	Unmodified	1301.6656	0.66558856	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	55.468	54.809	2;3	0.00044054	49857	160511_QHF_FH_JSI12i_1	48.44	41.312			0.99238	0.88587	29.14	4	3	Median	0.95386	0.77031	NaN	1	1	Median	0.62724	0.69361	NaN	1	1	Median	1.0325	1.0188	NaN	1	1	Median	1.28	1.3249	NaN	1	0	Median	95381000	50104000	45277000	18858000	8787100	10071000	19511000	12524000	6987000	27869000	13836000	14034000	29143000	14957000	14185000	25615	1936	24260	160410;160411;160412;160413;160414;160415	217167;217168;217169;217170;217171;217172;217173;217174	217169			8	
IPFNQALVFSNLHSR	0	Unmodified	1741.9264	0.92638813	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	78.678	69.554	3	0.00032152	38126	160513_QHF_FH_JSI11Kac_6	67.415	55.269			1.0793	1.0955	6.8307	3	0	Median	1.2514	1.0955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0744	1.025	NaN	1	0	Median	1.0793	1.1751	NaN	1	0	Median	159050000	74578000	84476000	77402000	33385000	44017000	0	0	0	65432000	33793000	31640000	16219000	7399600	8819400	25616	5301	24261	160416;160417;160418	217175;217176	217175			1	
IPFYLQPHASSGAK	1	Unmodified	1514.7882	0.78816332	3682	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	46.293	45.676	3	0.0004246	39043	160511_QHF_FH_JSI12i_3	60.196	52.472			0.7133	0.71986	28.506	3	1	Plateau	1.5095	1.2162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81228	0.77093	NaN	1	0	Median	0.7133	0.71986	NaN	1	0	Median	336760000	188930000	147830000	57656000	25738000	31918000	0	0	0	107220000	58637000	48581000	171880000	104550000	67330000	25617	3682	24262	160419;160420;160421	217177;217178;217179	217179			3	
IPFYLQPHASSGAKTLK	2	Acetyl (K)	1899.0254	0.025433475	3682	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	70.544	60.838	3	0.01169	31886	160513_QHF_FH_JSI12Kac_6	40.844	30.377			0.82891	0.90452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82891	0.90452	NaN	1	0	Median	16863000	9122300	7740300	0	0	0	0	0	0	0	0	0	16863000	9122300	7740300	25618	3682	24263	160422	217180	217180	2911		1	
IPGEETDTIQHMR	0	Unmodified	1525.7195	0.7194914	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.59	31.268	3	0.0065921	26512	160511_QHF_FH_JSI12i_2	39.509	34.43			1.4539	1.5719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4539	1.5719	NaN	1	1	Median	43192000	19387000	23805000	0	0	0	0	0	0	0	0	0	43192000	19387000	23805000	25619	1704	24264	160423	217181	217181			1	
IPGGATLVFEVELLK	1	Unmodified	1584.9127	0.91269513	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.68	101.56	2	0.00070922	89298	160511_QHF_FH_JSI11i_2	68.44	51.415			1.0017	1.0181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0017	1.0181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156500000	64532000	91973000	0	0	0	0	0	0	156500000	64532000	91973000	0	0	0	25620	1285	24265	160424	217182;217183	217182			2	
IPGGIIEDSCVLR	0	Unmodified	1427.7442	0.74424959	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		65.186	64.307	2	0.0095123	56891	160511_QHF_FH_JSI10i_2	49.189	27.62			0.88997	0.91004	6.053	2	0	Median	1.0228	0.87191	NaN	1	0	Median	0.77442	0.94983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	371610000	187430000	184180000	148250000	65403000	82851000	223360000	122030000	101330000	0	0	0	0	0	0	25621	1655	24266	160425;160426;160427	217184;217185	217185			2	
IPGLLGVFQK	1	Unmodified	1070.6488	0.64881629	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.88		4	4					1	2	3	2	3	3	84.802	81.652	2	0.00048094	69019	160511_QHF_FH_JSI9i_3	73.26	32.231			1.1816	1.1655	11.367	11	0	Median	1.3334	1.0704	7.0336	3	0	Plateau	0.96997	1.1635	0.7045	2	0	Median	1.4034	1.329	10.358	3	0	Median	1.1816	1.2041	4.8041	3	0	Median	5571300000	2625800000	2945600000	1197800000	537720000	660060000	1081600000	507450000	574180000	1453700000	644720000	808940000	1838300000	935880000	902390000	25622	1844	24267	160428;160429;160430;160431;160432;160433;160434;160435;160436;160437;160438	217186;217187;217188;217189;217190;217191;217192;217193;217194;217195;217196;217197;217198;217199;217200;217201;217202;217203;217204;217205;217206;217207;217208;217209;217210;217211;217212;217213;217214;217215;217216;217217;217218;217219;217220	217202			35	
IPGLLSPHPLLQLSYTATDR	0	Unmodified	2191.2001	0.20010338	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			4						2	2	3	1		91.065	88.208	3	0.00030318	77804	160511_QHF_FH_JSI10i_3	56.149	41.689			0.68694	0.7354	24.294	6	3	Median	0.81085	0.67292	37.743	2	0	Median	0.57379	0.68179	20.516	3	3	Plateau	0.69412	0.64693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	416910000	285850000	131050000	157570000	113680000	43892000	227920000	154100000	73818000	31424000	18080000	13344000	0	0	0	25623	1650	24268	160439;160440;160441;160442;160443;160444	217221;217222;217223;217224;217225;217226	217224			6	
IPGLNSPIPESCSFGYHAGGWGKPPVDETGK	2	Unmodified	3253.5502	0.55024782	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.04	78.04	4	0.010419	69745	160511_QHF_FH_JSI11i_3	29.377	23.597			0.77859	0.70042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77859	0.70042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33805000	25484000	8320800	0	0	0	0	0	0	33805000	25484000	8320800	0	0	0	25624	2412	24269	160445	217227	217227			1	
IPGMLIIDTPGHESFSNLR	0	Unmodified	2096.0725	0.072460022	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	3	1	83.022	82.566	2;3	3.416E-10	73702	160511_QHF_FH_JSI11i_3	124.26	103.03			1.0469	1.0359	18.151	6	3	Median	1.5341	1.2622	NaN	1	1	Median	0.73883	0.92058	NaN	1	1	Median	1.2286	1.1646	21.912	3	1	Median	0.89201	0.92148	NaN	1	0	Median	1521200000	805820000	715390000	137170000	63352000	73822000	174280000	108110000	66172000	761780000	392240000	369540000	447970000	242120000	205850000	25625	454	24270	160446;160447;160448;160449;160450;160451	217228;217229;217230;217231;217232;217233	217228			6	
IPGSAVLIFNVHVIDFHNPADVVEIR	0	Unmodified	2870.5443	0.54429822	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.858	85.486	3;4	5.9246E-23	46028	160513_QHF_FH_JSI12Kac_6	127.53	111.64			0.99864	1.0087	15.527	8	0	Median	0.99565	0.85004	8.774	2	0	Median	0.85304	1.008	6.4113	2	0	Median	1.3111	1.2361	0.40635	2	0	Median	1.005	1.0517	12.205	2	0	Median	4523000000	2098700000	2424300000	1254700000	558840000	695810000	1492500000	734260000	758250000	946900000	404790000	542100000	828900000	400790000	428110000	25626	3973	24271	160452;160453;160454;160455;160456;160457;160458;160459	217234;217235;217236;217237;217238;217239;217240;217241;217242;217243	217241			10	
IPGSPPESMGR	0	Unmodified	1126.5441	0.54409322	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	25.879	25.532	2	0.010203	21302	160511_QHF_FH_JSI11i_2	47.603	35.556			0.90515	1.0219	3.3165	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.87799	1.0441	NaN	1	0	Median	1.003	1.0011	4.5838	2	0	Median	0.942	1.01	NaN	1	0	Median	1422100000	736780000	685310000	0	0	0	437860000	250340000	187520000	577990000	289710000	288280000	406230000	196730000	209510000	25627	1702	24272	160460;160461;160462;160463	217244;217245;217246	217246			3	
IPHEPVINSSNVHVGSR	0	Unmodified	1840.9544	0.9543938	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			35.701	34.259	3;4	4.5615E-05	28035	160511_QHF_FH_JSI9i_3	71.685	65.248			1.0983	0.90893	10.538	3	0	Median	1.1725	0.95493	6.9822	2	0	Median	0.67336	0.81272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	312480000	148300000	164180000	222910000	95388000	127520000	89572000	52914000	36658000	0	0	0	0	0	0	25628	2584	24273	160464;160465;160466;160467	217247;217248;217249;217250;217251	217250			5	
IPHLAIHLQR	0	Unmodified	1196.7142	0.71421051	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	51.897	42.705	3;4	0.0003431	23314	160513_QHF_FH_JSI10Kac_6	64.297	53.54			0.96912	0.94825	24.14	5	1	Median	1.0646	0.91017	NaN	1	0	Median	0.63592	0.74308	37.371	2	1	Median	0.97803	0.94825	NaN	1	0	Median	0.96912	1.0468	NaN	1	0	Median	125340000	62578000	62763000	17744000	8849500	8894900	71752000	36037000	35715000	14446000	8095400	6350200	21399000	9596100	11803000	25629	5393	24274	160468;160469;160470;160471;160472	217252;217253;217254;217255	217253			4	
IPHLISSVLLR	0	Unmodified	1246.7761	0.77614207	3174	Q6YHU6	THADA	Thyroid adenoma-associated protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.649	69.278	3	0.0016934	37783	160513_QHF_FH_JSI10Kac_6	52.693	29.775			0.94835	1.1183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94835	1.1183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35140000	18631000	16508000	0	0	0	35140000	18631000	16508000	0	0	0	0	0	0	25630	3174	24275	160473	217256	217256			1	
IPHPLVPFDGPGLELHRPNLLLGLIIR	0	Unmodified	2995.7488	0.74875211	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.577	87.856	5	0.00089947	50470	160513_QHF_FH_JSI10Kac_6	50.498	48.048			0.756	0.88744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.756	0.88744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198460000	109030000	89432000	0	0	0	198460000	109030000	89432000	0	0	0	0	0	0	25631	3849	24276	160474	217257	217257			1	
IPIAVSGVR	0	Unmodified	910.56	0.56000128	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	88.816	88.061	2	0.024198	77654	160511_QHF_FH_JSI11i_2	49.358	18.069			4.2312	4.4329	5.948	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.7409	4.6233	NaN	1	1	Median	3.7762	4.2503	NaN	1	0	Median	19384000	3863000	15521000	0	0	0	0	0	0	10105000	1644700	8460800	9279000	2218300	7060700	25632	3860	24277	160475;160476	217258;217259	217259			2	
IPIFSAAGLPHNEIAAQICR	0	Unmodified	2177.1415	0.14154264	1189	P21281;P15313	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			84.121	82.857	3	0.0081621	69431	160511_QHF_FH_JSI10i_3	35.159	25.876			0.96045	0.9398	4.9123	2	0	Median	1.1823	0.97302	NaN	1	0	Median	0.78023	0.90772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57936000	34675000	23261000	19822000	9939900	9882600	38113000	24736000	13378000	0	0	0	0	0	0	25633	1189	24278	160477;160478	217260;217261;217262	217261			3	
IPIGFIPLGETSSLSHTLFAESGNK	1	Unmodified	2614.3643	0.36426817	2857	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.42	101.43	3	8.7108E-10	90464	160511_QHF_FH_JSI11i_3	83.202	63.305			0.73733	0.70967	0.53403	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77245	0.71235	NaN	1	0	Median	0.7038	0.70699	NaN	1	0	Median	671920000	416130000	255790000	0	0	0	0	0	0	340200000	200010000	140190000	331720000	216120000	115600000	25634	2857	24279	160479;160480	217263;217264	217263			2	
IPIHNEDITYDELVLMMQR	0	Unmodified	2329.1446	0.14463869	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	1	3	3	3	94.353	92.563	3	3.9218E-13	42079	160513_QHF_FH_JSI12Kac_6	123.41	114.36			1.1124	1.1589	20.272	9	6	Median	1.159	0.98014	NaN	1	0	Median	1.0366	1.2292	8.333	2	1	Median	1.3108	1.2203	18.362	3	3	Median	1.0504	1.1309	30.386	3	2	Median	568630000	275760000	292870000	70476000	30905000	39571000	178900000	87960000	90945000	164470000	80887000	83585000	154780000	76006000	78770000	25635	3876	24280	160481;160482;160483;160484;160485;160486;160487;160488;160489;160490	217265;217266;217267;217268;217269;217270;217271;217272;217273;217274;217275;217276;217277;217278;217279;217280	217279			16	
IPILLIQQPGK	1	Unmodified	1218.77	0.76999406	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	77.275	76.051	2	0.0032138	65681	160511_QHF_FH_JSI12i_2	69.423	59.437			0.70215	0.76155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70215	0.76155	NaN	1	1	Median	57430000	28081000	29350000	0	0	0	0	0	0	0	0	0	57430000	28081000	29350000	25636	4288	24281	160491	217281	217281			1	
IPILYGEVEK	1	Unmodified	1159.6489	0.64887587	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	61.028	60.203	2	0.0102	51692	160511_QHF_FH_JSI12i_2	54.608	34.278			0.57728	0.62924	18.358	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5466	0.55266	NaN	1	0	Median	0.70833	0.75134	6.7284	2	0	Median	491290000	248600000	242690000	0	0	0	0	0	0	218800000	123120000	95679000	272490000	125480000	147010000	25637	5160	24282	160492;160493;160494	217282;217283;217284;217285	217282			4	
IPIPLMDYILNVMK	1	Unmodified	1658.914	0.91395746	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	103.67	103.63	2;3	2.1619E-05	90370	160511_QHF_FH_JSI12i_3	112.43	106.27			0.82866	0.83947	12.627	6	1	Median	NaN	NaN	NaN	0	0	Median	0.64892	0.77497	10.097	2	1	Median	0.91604	0.88124	14.538	2	0	Median	0.90673	0.92397	12.355	2	0	Median	151550000	85857000	65695000	0	0	0	11705000	6837400	4867400	38914000	21461000	17453000	100930000	57558000	43375000	25638	3290	24283	160495;160496;160497;160498;160499;160500	217286;217287;217288;217289;217290;217291;217292;217293;217294	217294			9	
IPISLVLR	0	Unmodified	909.60114	0.60113781	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	70.45	70.3	2	0.048325	61007	160511_QHF_FH_JSI12i_3	37.646	17.091			0.88584	0.84504	14.198	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0429	0.93429	NaN	1	0	Median	0.75243	0.76432	NaN	1	0	Median	99234000	54432000	44802000	0	0	0	0	0	0	48136000	26623000	21513000	51098000	27809000	23289000	25639	721	24284	160501;160502	217295	217295			1	
IPITNENRK	1	Unmodified	1083.6037	0.60365701	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			10.081	9.4933	3	0.03443	7179	160511_QHF_FH_JSI10i_3	30.612	18.085			1.1373	1.3328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1373	1.3328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53823000	24005000	29818000	0	0	0	53823000	24005000	29818000	0	0	0	0	0	0	25640	2227	24285	160503	217296	217296			1	
IPKHLTDAYFK	2	Acetyl (K)	1373.7343	0.73433683	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	61.339	51.602	3	1.4187E-05	27919	160513_QHF_FH_JSI11Kac_6	98.156	80.348			0.33399	0.36112	96.684	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2189	1.4655	NaN	1	0	Median	0.24128	0.22931	NaN	1	0	Median	0.33399	0.36112	NaN	1	0	Median	185200000	137070000	48129000	0	0	0	27766000	11346000	16419000	132920000	107570000	25350000	24515000	18156000	6359200	25641	2196	24286	160504;160505;160506;160507	217297;217298;217299;217300;217301	217297	2317;2318		5	
IPLDVNDMK	1	Unmodified	1043.5321	0.53213155	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	50.614	49.831	2	0.013478	44799	160511_QHF_FH_JSI10i_1	46.457	22.688			0.87517	0.94154	12.851	5	0	Linear	0.87517	0.72746	0	2	0	Median	0.68113	0.79761	NaN	1	0	Median	0.84401	0.81785	NaN	1	0	Median	0.96819	0.99585	NaN	1	0	Median	743330000	382790000	360550000	231100000	90007000	141100000	160140000	113360000	46784000	162190000	73430000	88760000	189900000	105990000	83909000	25642	5712	24287	160508;160509;160510;160511;160512	217302;217303;217304;217305	217304			4	
IPLFLVGKPGSSK	2	Unmodified	1341.802	0.80202247	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			63.807	62.296	3	0.013161	52176	160511_QHF_FH_JSI10i_3	40.552	29.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25643	3009	24288	160513	217306	217306			1	
IPLGFYYGHTYILPWESELK	1	Unmodified	2425.2358	0.23582018	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.612	84.264	3	3.0421E-14	49126	160513_QHF_FH_JSI10Kac_6	131.54	113.38			0.98285	0.96175	7.7781	4	0	Median	1.1622	0.99044	NaN	1	0	Median	0.72776	0.87263	NaN	1	0	Median	0.97434	0.93389	NaN	1	0	Median	0.99144	1.0457	NaN	1	0	Median	1788000000	939740000	848240000	396910000	188460000	208460000	455090000	258820000	196270000	488980000	255490000	233490000	447010000	236970000	210030000	25644	4936	24289	160514;160515;160516;160517	217307;217308;217309;217310;217311;217312;217313	217312			7	
IPLLSDLTHQISK	1	Unmodified	1463.8348	0.83477916	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.54		5	6						3	4	2	3	5	79.079	76.414	3	1.7699E-07	69606	160511_QHF_FH_JSI11i_3	131.06	115.51			0.983	1.0181	32.024	13	2	Median	1.1849	0.99174	12.547	4	1	Median	0.81576	0.96123	17.67	2	0	Median	1.1559	1.0858	56.42	3	0	Plateau	0.97682	1.0267	22.48	4	1	Median	4124300000	2120000000	2004300000	524670000	261490000	263180000	536770000	307780000	228990000	1208700000	657680000	551050000	1854100000	893100000	961040000	25645	2364	24290	160518;160519;160520;160521;160522;160523;160524;160525;160526;160527;160528;160529;160530;160531	217314;217315;217316;217317;217318;217319;217320;217321;217322;217323;217324;217325;217326;217327;217328;217329;217330;217331;217332;217333;217334;217335;217336;217337;217338;217339;217340;217341;217342;217343;217344;217345;217346;217347;217348;217349;217350;217351;217352;217353;217354;217355;217356;217357;217358;217359	217319			46	
IPLMLNDSGSAHSMPK	1	Unmodified	1696.8277	0.82766164	2156	Q00613	HSF1	Heat shock factor protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.347	51.821	3	0.01684	44753	160511_QHF_FH_JSI11i_2	35.852	20.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25646	2156	24291	160532	217360	217360			1	
IPLMYIEELK	1	Oxidation (M)	1263.6785	0.67846144	5763				yes	yes	0	0	1	0			By MS/MS		2	0		1										1		39.904	39.445	2	0.01887	33770	160511_QHF_FH_JSI11i_2	45.081	6.0595	+		0.95803	1.02	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95803	1.02	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38906000	15663000	23243000	0	0	0	0	0	0	38906000	15663000	23243000	0	0	0	25647	5763	24292	160533	217361	217361		2744	1	
IPLNDLFR	0	Unmodified	986.55492	0.5549159	1028	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	72.176	71.629	2	0.0070234	61952	160511_QHF_FH_JSI12i_2	60.788	29.498			1.1168	1.1828	13.43	8	0	Median	1.4851	1.2872	NaN	1	0	Median	0.90345	1.0447	20.618	2	0	Median	1.1633	1.1893	14.266	3	0	Plateau	1.1529	1.2032	4.33	2	0	Median	1361900000	647200000	714660000	186070000	78124000	107950000	274230000	145460000	128770000	536760000	259680000	277080000	364790000	163940000	200850000	25648	1028	24293	160534;160535;160536;160537;160538;160539;160540;160541	217362;217363;217364;217365;217366;217367;217368;217369	217364			8	
IPLPAGYREEIVR	0	Unmodified	1511.846	0.84601255	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			57.214	55.666	3	0.012146	45767	160511_QHF_FH_JSI9i_3	40.725	25.693			0.92282	0.88804	6.6933	2	0	Median	1.1705	0.93108	NaN	1	0	Median	0.72758	0.84699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84747000	39846000	44900000	51917000	24399000	27518000	32830000	15447000	17383000	0	0	0	0	0	0	25649	1621	24294	160542;160543	217370;217371	217371			2	
IPLSQEEITLQGHAFEAR	0	Unmodified	2038.0484	0.048353761	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	66.08	65.933	3	4.5775E-05	56948	160511_QHF_FH_JSI12i_3	68.187	59.999			1.1516	1.1257	6.9313	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2529	1.1823	NaN	1	1	Median	1.0584	1.0719	NaN	1	0	Median	85222000	39260000	45961000	0	0	0	0	0	0	22339000	10941000	11398000	62882000	28319000	34563000	25650	4223	24295	160544;160545	217372;217373	217373			2	
IPMFIVHK	1	Unmodified	983.56264	0.56264382	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	57.092	52.038	3	0.00045907	44227	160511_QHF_FH_JSI12i_3	88.942	80.079			0.97648	0.96206	11.368	8	0	Median	1.1676	0.96608	12.691	2	0	Median	0.85927	1.0093	12.756	2	0	Median	0.95735	0.89866	4.2422	2	0	Median	1.0333	1.093	12.651	2	0	Median	930450000	495490000	434970000	257500000	124530000	132970000	211570000	129270000	82300000	184990000	85654000	99338000	276400000	156040000	120360000	25651	1615	24296	160546;160547;160548;160549;160550;160551;160552;160553	217374;217375;217376;217377;217378;217379;217380;217381;217382;217383;217384;217385;217386;217387;217388;217389;217390	217388			17	
IPMFIVHKK	2	Unmodified	1111.6576	0.65760684	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	3	2	1	2	42.904	37.682	3;4	0.001957	20277	160513_QHF_FH_JSI9Kac_6	57.96	57.96			0.93545	0.8273	28.688	8	4	Median	0.95886	0.57493	22.938	3	1	Plateau	0.58364	0.68868	27.273	2	2	Median	1.1453	1.1075	NaN	1	0	Median	1.0466	1.0963	13.833	2	1	Median	221740000	124740000	96998000	107740000	62063000	45672000	20310000	9416200	10894000	8576100	3637800	4938300	85120000	49626000	35494000	25652	1615	24297	160554;160555;160556;160557;160558;160559;160560;160561	217391;217392;217393;217394;217395;217396;217397;217398	217395			8	
IPMPDFDLHLK	1	Unmodified	1324.6849	0.6849438	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	77.589	76.899	3	9.5216E-05	73038	160511_QHF_FH_JSI11i_3	58.274	53.333			1.0804	1.0262	11.626	7	0	Median	1.1305	0.946	3.9119	2	0	Median	0.81118	0.97956	NaN	1	0	Median	1.1031	1.0717	6.1249	2	0	Median	1.1388	1.2132	8.3876	2	0	Median	607500000	298840000	308650000	137820000	71712000	66103000	55839000	28254000	27584000	194680000	97516000	97169000	219160000	101360000	117800000	25653	2286	24298	160562;160563;160564;160565;160566;160567;160568	217399;217400;217401;217402;217403;217404;217405;217406;217407	217399			9	
IPMPDFDLHLK	1	Oxidation (M)	1340.6799	0.67985842	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	68.23	67.932	3	0.049195	58628	160511_QHF_FH_JSI12i_3	30.004	21.115			2.2877	2.4342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2877	2.4342	NaN	1	1	Median	20810000	6642100	14167000	0	0	0	0	0	0	0	0	0	20810000	6642100	14167000	25654	2286	24298	160569	217408	217408			1	
IPMTPTSSFVSPPPPTASPHSNR	0	Unmodified	2404.1845	0.18452967	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	1	2		59.547	58.29	3	4.373E-05	51823	160511_QHF_FH_JSI11i_3	57.806	50.184			1.1656	1.1628	2.3052	2	0	Median	1.3516	1.144	NaN	1	0	Median	1.0052	1.1819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49251000	23466000	25784000	23315000	10840000	12475000	25936000	12627000	13309000	0	0	0	0	0	0	25655	3283	24299	160570;160571;160572;160573	217409;217410;217411;217412;217413;217414;217415;217416	217410			8	
IPNEHKK	2	Acetyl (K)	906.49232	0.49231565	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		6.4338	-3.0898	3	0.038528	2237	160513_QHF_FH_JSI11Kac_5	40.778	23.682			2.6674	2.6095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6674	2.6095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3681000	1225000	2456000	0	0	0	0	0	0	3681000	1225000	2456000	0	0	0	25656	3857	24300	160574	217417	217417	2965		1	
IPNFLHLTPVAIK	1	Unmodified	1461.8708	0.87077073	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	1	2	86.509	85.979	3	2.9578E-05	70653	160511_QHF_FH_JSI9i_3	86.803	75.59			0.85817	0.87765	15.695	7	3	Median	0.94977	0.78638	20.498	2	0	Median	0.65401	0.79608	29.402	2	1	Median	0.93275	0.87404	NaN	1	0	Median	0.86097	0.88187	0.67981	2	2	Median	513140000	262350000	250790000	106510000	52189000	54322000	80597000	44630000	35967000	118610000	56612000	61998000	207420000	108920000	98502000	25657	2107	24301	160575;160576;160577;160578;160579;160580;160581	217418;217419;217420;217421;217422;217423;217424;217425;217426;217427;217428;217429;217430;217431;217432;217433;217434;217435;217436;217437;217438;217439;217440	217432			23	
IPNFLHLTPVAIKK	2	Unmodified	1589.9657	0.96573375	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			75.654	74.213	3	0.0008526	61251	160511_QHF_FH_JSI9i_3	57.804	46.699			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25658	2107	24302	160582;160583;160584	217441;217442;217443	217443			3	
IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR	0	Unmodified	3724.8526	0.85256107	2164	Q01105	SET	Protein SET	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	96.538	88.957	5	5.9345E-40	47653	160513_QHF_FH_JSI12Kac_6	144.92	135.3			1.0693	1.2163	5.8452	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96968	1.1671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1793	1.2676	NaN	1	0	Median	417380000	163530000	253850000	0	0	0	266400000	90055000	176340000	0	0	0	150980000	73473000	77508000	25659	2164	24303	160585;160586	217444;217445	217444			2	
IPNIYAIGDVVAGPMLAHK	1	Oxidation (M)	1994.0659	0.065918081	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	88.119	87.682	3	4.5207E-08	76131	160511_QHF_FH_JSI12i_3	102.33	92.269			1.0151	1.0613	22.216	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75645	0.9109	33.489	2	0	Median	1.0428	0.98045	NaN	1	0	Median	1.1468	1.1488	NaN	1	0	Median	337320000	166500000	170820000	0	0	0	55571000	30100000	25471000	121480000	60828000	60648000	160280000	75572000	84703000	25660	935	24304	160587;160588;160589;160590	217446;217447;217448;217449;217450;217451;217452;217453	217452		509	8	
IPNIYAIGDVVAGPMLAHK	1	Unmodified	1978.071	0.071003459	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	3	3	99.008	97.044	3	6.1239E-14	87432	160511_QHF_FH_JSI12i_3	146.58	129.09			1.0284	1.0553	12.264	10	1	Median	1.3419	1.1063	8.5197	2	0	Median	0.85695	1.0207	14.176	2	0	Median	1.0923	1.0691	6.8705	3	0	Median	0.92262	1.0998	18.039	3	1	Plateau	6543900000	3345200000	3198700000	628120000	301320000	326800000	1080100000	605730000	474380000	2242100000	1133700000	1108300000	2593600000	1304400000	1289200000	25661	935	24304	160591;160592;160593;160594;160595;160596;160597;160598;160599;160600	217454;217455;217456;217457;217458;217459;217460;217461;217462;217463;217464;217465;217466;217467	217466			14	
IPNPDFFEDLEPFR	0	Unmodified	1734.8253	0.82533668	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.55	101.43	2	0.0025679	89162	160511_QHF_FH_JSI11i_2	69.672	52.198			1.0221	1.0429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0221	1.0429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	194190000	97228000	96964000	0	0	0	0	0	0	194190000	97228000	96964000	0	0	0	25662	1299	24305	160601	217468	217468			1	
IPNQFQSDPPAPSDK	1	Unmodified	1639.7842	0.78420015	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	2	1	37.006	36.392	2;3	0.00065388	32409	160511_QHF_FH_JSI10i_1	67.385	43.534			0.99003	0.93681	13.504	7	2	Median	0.95117	0.78436	4.7021	2	1	Median	0.76958	0.91189	3.8119	2	0	Median	1.0872	1.0482	3.4578	2	1	Median	1.0398	1.06	NaN	1	0	Median	464290000	234860000	229430000	101890000	56321000	45567000	158380000	78614000	79765000	147820000	70455000	77362000	56210000	29469000	26741000	25663	4965	24306	160602;160603;160604;160605;160606;160607;160608;160609	217469;217470;217471;217472;217473;217474;217475;217476;217477	217475			9	
IPPPVIMVQNVSFK	1	Unmodified	1567.8796	0.87962086	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.84	2	5	6						4	2	5	6	4	88.484	86.083	2;3	8.8672E-11	79482	160511_QHF_FH_JSI11i_3	112.44	101.49			0.96259	1.0011	37.695	12	9	Median	0.94113	0.8312	NaN	1	0	Median	0.96418	1.08	41.33	3	3	Median	0.95572	0.93615	13.615	5	3	Median	1.6474	1.8203	38.38	3	3	Median	591950000	219490000	372460000	36711000	18801000	17910000	112600000	51089000	61511000	197610000	90861000	106750000	245030000	58737000	186290000	25664	5279	24307	160610;160611;160612;160613;160614;160615;160616;160617;160618;160619;160620;160621;160622;160623;160624;160625;160626	217478;217479;217480;217481;217482;217483;217484;217485;217486;217487;217488;217489;217490;217491;217492;217493;217494;217495	217479			18	
IPPSSAPTVLSVPAGTTIVK	1	Unmodified	1934.1088	0.10882875	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	77.327	76.849	3	0.0012209	69837	160511_QHF_FH_JSI11i_1	42.716	32.659			0.94165	0.92408	4.9929	4	0	Median	1.1211	0.90851	NaN	1	0	Median	0.73676	0.8584	NaN	1	0	Median	0.97689	0.93991	NaN	1	0	Median	0.90768	0.96326	NaN	1	0	Median	187840000	106110000	81733000	42694000	25923000	16771000	48167000	25683000	22484000	51907000	27434000	24474000	45072000	27067000	18005000	25665	1743	24308	160627;160628;160629;160630;160631	217496;217497;217498;217499;217500;217501	217496			6	
IPPYHYIHVLDQNSNVSR	0	Unmodified	2151.0861	0.086136251	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.2	6.37			3						2	2	3			59.751	55.35	3	0.0073578	29505	160513_QHF_FH_JSI10Kac_6	41.513	31.137			0.76203	1.031	16.579	5	2	Linear	1.4313	1.1952	20.902	2	2	Median	0.78722	0.91583	14.779	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109680000	47016000	62666000	29390000	9165600	20224000	80292000	37851000	42442000	0	0	0	0	0	0	25666	2573	24309	160632;160633;160634;160635;160636	217502;217503;217504;217505;217506;217507	217507			5	
IPQAIAQLSK	1	Unmodified	1067.6339	0.63389451	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				46.729	45.674	2	0.014562	39968	160511_QHF_FH_JSI9i_2	52.49	29.418			2.1519	1.8385	NaN	1	1	Median	2.1519	1.8385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87945000	32309000	55636000	87945000	32309000	55636000	0	0	0	0	0	0	0	0	0	25667	2767	24310	160637	217508	217508			1	
IPQLAPPASDSTVTK	1	Unmodified	1523.8195	0.81952302	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.6	48.921	2	0.0010139	43371	160511_QHF_FH_JSI9i_1	65.232	57.953			0.97368	0.9762	4.6432	4	0	Median	1.1652	0.94981	NaN	1	0	Median	0.8408	1.0033	NaN	1	0	Median	1.0514	1.0082	NaN	1	0	Median	0.90168	0.91504	NaN	1	0	Median	533940000	246720000	287220000	132660000	59376000	73280000	131450000	64139000	67308000	156370000	68471000	87903000	113460000	54733000	58726000	25668	2732	24311	160638;160639;160640;160641	217509;217510;217511;217512;217513;217514;217515	217515			7	
IPQLYQSGVVVLVLTVLSSMGLAAM	0	Oxidation (M)	2604.4271	0.42706812	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	1	0		By MS/MS			11	0				1							1			107.4	98.293	3	0.0024493	37337	160513_QHF_FH_JSI10Kac_1	46.982	39.27			1.2352	1.4238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2352	1.4238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5061700	1807800	3253800	0	0	0	5061700	1807800	3253800	0	0	0	0	0	0	25669	4298	24312	160642	217516;217517	217517		2435	2	
IPQLYQSGVVVLVLTVLSSMGLAAM	0	Unmodified	2588.4322	0.4321535	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.95	102.23	3	0.032236	60522	160513_QHF_FH_JSI10Kac_6	36.9	29.096			0.4886	0.58578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4886	0.58578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7186700	5859900	1326800	0	0	0	7186700	5859900	1326800	0	0	0	0	0	0	25670	4298	24312	160643	217518	217518			1	
IPQQNSESAMAK	1	Unmodified	1302.6238	0.6238001	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.69	13.561	2	0.027652	11103	160511_QHF_FH_JSI11i_1	40.589	24.927			1.2357	1.1537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2357	1.1537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49953000	24188000	25765000	0	0	0	0	0	0	49953000	24188000	25765000	0	0	0	25671	4619	24313	160644	217519	217519			1	
IPQSHIQQICETILTSGENLAR	0	Unmodified	2507.2802	0.28022097	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			89.986	88.87	3	3.5088E-10	74199	160511_QHF_FH_JSI10i_3	107.47	99.475			1.026	0.99054	13.59	2	0	Median	1.349	1.0904	NaN	1	0	Median	0.78032	0.89978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70030000	34806000	35224000	24097000	10442000	13655000	45933000	24364000	21569000	0	0	0	0	0	0	25672	380	24314	160645;160646;160647	217520;217521;217522;217523	217520			4	
IPQVTTHWLEILQALLLSSNQELQHR	0	Unmodified	3066.6615	0.66145325	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		99.261	91.163	3;4	2.5161E-43	51886	160513_QHF_FH_JSI9Kac_6	170.27	160.22			1.3198	1.1954	23.324	3	2	Median	1.3198	1.1954	NaN	1	0	Median	0.68749	0.82175	NaN	1	1	Median	1.3296	1.2606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6215300000	2559200000	3656000000	3258800000	1439900000	1818900000	601700000	483950000	117740000	2354800000	635360000	1719400000	0	0	0	25673	4704	24315	160648;160649;160650	217524;217525;217526;217527	217525			4	
IPSAVGYQPTLATDMGTMQER	0	Oxidation (M)	2281.0719	0.071867674	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									3	4	4	3	62.949	62.352	2;3	1.1952E-07	54782	160511_QHF_FH_JSI12i_1	87.326	81.825			1.0592	1.1238	19.648	14	3	Median	1.5679	1.2888	3.1631	3	1	Plateau	0.9175	1.0823	21.328	4	1	Median	1.1016	1.0708	20.002	4	1	Median	0.87455	0.92792	20.105	3	0	Median	1152800000	546630000	606150000	237720000	90626000	147100000	259070000	128980000	130090000	309580000	151690000	157890000	346400000	175330000	171070000	25674	851	24316	160651;160652;160653;160654;160655;160656;160657;160658;160659;160660;160661;160662;160663;160664	217528;217529;217530;217531;217532;217533;217534;217535;217536;217537;217538;217539;217540;217541;217542;217543;217544;217545;217546;217547;217548	217536		372;373	21	
IPSAVGYQPTLATDMGTMQER	0	Unmodified	2265.077	0.076953052	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	8	8	2							5	4	4	5	72.722	72.003	2;3	4.8587E-36	65511	160511_QHF_FH_JSI11i_1	229.54	219.49			1.1026	1.1276	5.6374	18	2	Median	1.3592	1.1523	2.3571	5	1	Median	0.9387	1.1147	4.0054	4	0	Median	1.0917	1.0624	4.1191	4	0	Linear	1.0503	1.1165	9.294	5	1	Median	9111200000	4322700000	4788600000	1723000000	661030000	1061900000	2280500000	1140800000	1139800000	3173400000	1532100000	1641300000	1934300000	988810000	945530000	25675	851	24316	160665;160666;160667;160668;160669;160670;160671;160672;160673;160674;160675;160676;160677;160678;160679;160680;160681;160682	217549;217550;217551;217552;217553;217554;217555;217556;217557;217558;217559;217560;217561;217562;217563;217564;217565;217566;217567;217568;217569;217570;217571;217572;217573;217574;217575;217576;217577;217578;217579;217580;217581;217582;217583;217584;217585;217586;217587	217550			39	
IPSDTFYDHEDTTTDK	1	Unmodified	1883.8061	0.80611738	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	35.235	34.84	3	0.0016578	31071	160511_QHF_FH_JSI10i_1	58.09	47.623			0.95083	0.98794	6.1784	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.95083	1.1073	NaN	1	1	Median	1.0654	1.0038	NaN	1	0	Median	0.94812	0.98794	NaN	1	0	Median	174460000	88807000	85651000	0	0	0	48264000	25204000	23059000	50899000	22627000	28273000	75295000	40976000	34319000	25676	2491	24317	160683;160684;160685	217588;217589	217589			2	
IPSTENSSQEISVEER	0	Unmodified	1803.8487	0.8486509	4256	Q96T58	SPEN	Msx2-interacting protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				75.024	74.119	2	0.041338	65987	160511_QHF_FH_JSI9i_1	45.433	19.315			2.4329	1.981	NaN	1	1	Median	2.4329	1.981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69510000	12783000	56727000	69510000	12783000	56727000	0	0	0	0	0	0	0	0	0	25677	4256	24318	160686	217590	217590			1	
IPTEAPQLELK	1	Unmodified	1237.6918	0.69180331	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	56.433	55.73	2	0.016001	50222	160511_QHF_FH_JSI10i_1	42.718	30.87			0.89402	0.86198	18.774	5	0	Median	1.1043	0.8977	NaN	1	0	Median	0.5906	0.71269	26.896	2	0	Median	0.89402	0.85095	NaN	1	0	Median	0.8989	0.94378	NaN	1	0	Median	1072100000	531070000	541030000	271210000	106910000	164310000	254090000	155850000	98238000	316240000	152710000	163530000	230570000	115610000	114960000	25678	2992	24319	160687;160688;160689;160690;160691	217591	217591			1	
IPTHLFTFIQFK	1	Unmodified	1490.8286	0.82857157	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	3	3	4	5	88.308	83.441	2;3	1.0842E-13	42127	160513_QHF_FH_JSI9Kac_6	132.91	115.05			1.0197	0.99841	16.35	14	0	Median	1.0985	0.99146	15.322	3	0	Median	0.69994	0.83166	7.208	3	0	Median	1.1579	1.0913	23.352	4	0	Median	1.0197	1.065	10.719	4	0	Median	12461000000	6136400000	6324500000	4049100000	1791500000	2257500000	3247200000	1787400000	1459800000	2785300000	1321500000	1463800000	2379400000	1236100000	1143300000	25679	962	24320	160692;160693;160694;160695;160696;160697;160698;160699;160700;160701;160702;160703;160704;160705;160706	217592;217593;217594;217595;217596;217597;217598;217599;217600;217601;217602;217603;217604;217605;217606;217607;217608;217609;217610;217611;217612;217613;217614;217615;217616;217617;217618;217619;217620	217605			29	
IPTHLFTFIQFKK	2	Unmodified	1618.9235	0.92353459	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	4	3	3	4	80.322	74.558	3;4	0.00017118	39107	160513_QHF_FH_JSI11Kac_6	82.34	74.163			1.1821	1.1735	19.384	11	11	Median	1.1821	1.0092	12.354	3	3	Median	0.74134	0.88164	2.2197	2	2	Median	1.3696	1.3292	11.346	3	3	Plateau	1.4628	1.5502	14.641	3	3	Plateau	1942800000	876170000	1066600000	708650000	307140000	401510000	659140000	336550000	322590000	373580000	159230000	214350000	201400000	73251000	128150000	25680	962	24321	160707;160708;160709;160710;160711;160712;160713;160714;160715;160716;160717;160718;160719;160720	217621;217622;217623;217624;217625;217626;217627;217628;217629;217630;217631;217632;217633;217634	217623			14	
IPTISTQLK	1	Unmodified	999.59645	0.59644637	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	45.806	45.017	2	0.0030629	39512	160511_QHF_FH_JSI9i_2	61.962	26.082			0.85023	0.867	9.544	6	0	Median	0.85805	0.72516	NaN	1	0	Median	0.70055	0.85083	3.1888	2	0	Median	0.87472	0.87896	2.4654	2	0	Median	0.84248	0.96725	NaN	1	0	Median	1399700000	734130000	665530000	240540000	132030000	108510000	396650000	232190000	164460000	456330000	222140000	234190000	306130000	147770000	158360000	25681	1139	24322	160721;160722;160723;160724;160725;160726	217635;217636;217637;217638;217639;217640;217641;217642;217643;217644	217642			10	
IPTRPFEEGK	1	Unmodified	1172.619	0.61897272	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.8	0.4		1	4							2	1	1	1	24.688	23.958	3	0.0044488	19451	160511_QHF_FH_JSI9i_3	39.917	18.158			0.94953	0.85792	4.6425	5	0	Median	1.0494	0.87141	3.2786	2	0	Median	0.7013	0.81249	NaN	1	0	Median	0.94953	0.91732	NaN	1	0	Median	0.82946	0.85792	NaN	1	0	Median	506900000	254290000	252610000	167680000	81258000	86425000	124190000	74184000	50002000	174130000	79281000	94854000	40897000	19568000	21329000	25682	4793	24323	160727;160728;160729;160730;160731	217645;217646;217647;217648;217649;217650;217651	217650			7	
IPTYNISVVGLSGTEK	1	Unmodified	1676.8985	0.89850163	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	75.209	74.654	3	0.05309	68081	160511_QHF_FH_JSI12i_1	25.824	19.387			2.7279	2.7745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7279	2.7745	NaN	1	1	Median	9226000	2857300	6368700	0	0	0	0	0	0	0	0	0	9226000	2857300	6368700	25683	4974	24324	160732	217652	217652			1	
IPVDTYNNILTVLK	1	Unmodified	1601.9029	0.90285872	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.596	6	8	1							3	4	4	4	95.971	95.741	2;3	4.8936E-05	84750	160511_QHF_FH_JSI10i_2	89.629	76.862			0.96869	1.0268	13.253	15	1	Median	1.2694	1.1018	17.113	3	0	Median	0.83744	0.99503	5.8169	4	1	Median	1.0526	1.0407	18.332	4	0	Median	0.98162	1.0203	14.935	4	0	Median	1734900000	849830000	885110000	349350000	169410000	179940000	469070000	243920000	225140000	512870000	235310000	277560000	403660000	201180000	202480000	25684	4212	24325	160733;160734;160735;160736;160737;160738;160739;160740;160741;160742;160743;160744;160745;160746;160747	217653;217654;217655;217656;217657;217658;217659;217660;217661;217662;217663;217664;217665	217664			13	
IPVENILGEVGDGFK	1	Unmodified	1585.8352	0.83517309	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	1	2	3	97.036	96.783	2;3	0.011881	85616	160511_QHF_FH_JSI10i_2	37.092	29.721			0.98302	0.71729	16.525	8	0	Linear	0.92933	0.79839	21.393	2	0	Median	0.84077	1.0094	NaN	1	0	Median	1.0786	1.0437	9.9347	2	0	Median	0.76083	0.80861	16.427	3	0	Plateau	143740000	82909000	60833000	59137000	35030000	24107000	7507100	3548000	3959100	21521000	11881000	9640000	55577000	32450000	23127000	25685	4777	24326	160748;160749;160750;160751;160752;160753;160754;160755	217666;217667;217668;217669;217670;217671;217672;217673;217674;217675	217675			9	
IPVGPETLGR	0	Unmodified	1037.5869	0.58694431	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	43.332	42.705	2	0.020165	38753	160511_QHF_FH_JSI12i_1	41.876	21.321			1.5146	1.4445	12.846	7	0	Median	1.6722	1.3731	7.1634	2	0	Median	1.3854	1.6613	NaN	1	0	Median	1.4026	1.4076	7.5744	2	0	Median	1.4006	1.4643	24.85	2	0	Median	11462000000	4641400000	6820500000	2827300000	1119000000	1708300000	2131300000	872610000	1258700000	5144800000	2118000000	3026800000	1358600000	531870000	826780000	25686	851	24327	160756;160757;160758;160759;160760;160761;160762	217676;217677;217678;217679;217680;217681;217682	217676			7	
IPVHPNDHVNK	1	Unmodified	1268.6626	0.66256887	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	6.2		7	9						7	4	6	7	6	12.8	10.243	2;3;4	5.6928E-07	7735	160511_QHF_FH_JSI12i_3	113.71	97.825			1.0045	1.0401	19.301	23	3	Median	1.2287	1.0473	23.074	4	1	Median	0.83605	1.02	28.115	6	1	Median	0.84956	1.1071	20.007	7	1	Linear	1.0725	1.0559	5.9252	6	0	Linear	15809000000	7272800000	8536600000	407360000	228450000	178910000	732880000	403750000	329130000	5277300000	2684100000	2593200000	9391900000	3956500000	5435400000	25687	887	24328	160763;160764;160765;160766;160767;160768;160769;160770;160771;160772;160773;160774;160775;160776;160777;160778;160779;160780;160781;160782;160783;160784;160785	217683;217684;217685;217686;217687;217688;217689;217690;217691;217692;217693;217694;217695;217696;217697;217698;217699;217700;217701;217702;217703;217704;217705;217706;217707;217708	217703			24	
IPVQALLHLR	0	Unmodified	1158.7237	0.72371257	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	1	2	73.836	67.775	3	4.0636E-05	57971	160511_QHF_FH_JSI10i_3	82.749	75.861			1.1695	0.95716	15.353	5	0	Median	1.2515	1.0543	13.674	2	0	Median	0.76506	0.90918	NaN	1	0	Median	0.95639	0.91611	NaN	1	0	Median	1.1713	1.2742	NaN	1	0	Median	69769000	35292000	34477000	28186000	11439000	16747000	18852000	12200000	6651900	17097000	9666200	7430400	5634200	1986500	3647700	25688	1463	24329	160786;160787;160788;160789;160790;160791	217709;217710;217711;217712;217713;217714;217715;217716;217717;217718;217719	217711			11	
IPVQLVFK	1	Unmodified	942.59024	0.59023878	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0.632	1	3	1							1		3	1	67.39	66.751	2	0.016626	57583	160511_QHF_FH_JSI12i_2	49.358	37.454			0.90274	0.84595	13.163	5	0	Median	0.89633	0.77233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84562	0.81972	8.8206	3	0	Plateau	0.9454	1.0668	NaN	1	0	Median	601790000	312130000	289660000	107620000	56698000	50919000	0	0	0	339630000	172600000	167030000	154540000	82826000	71716000	25689	3173	24330	160792;160793;160794;160795;160796	217720;217721;217722	217721			3	
IPVTDEEQTNVPYIYAIGDILEDK	1	Unmodified	2734.3589	0.35890802	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	102.01	101.91	3	2.352E-16	92652	160511_QHF_FH_JSI11i_1	119.34	110.01			0.94078	0.98729	7.061	4	0	Median	1.2244	0.99812	NaN	1	0	Median	0.93108	1.0864	NaN	1	0	Median	0.95058	0.91563	NaN	1	0	Median	0.91759	0.97658	NaN	1	0	Median	1202400000	644750000	557670000	135580000	58503000	77074000	382790000	203670000	179120000	349950000	199550000	150400000	334100000	183030000	151070000	25690	2778	24331	160797;160798;160799;160800;160801	217723;217724;217725	217723			3	
IPVTIITGYLGAGK	1	Unmodified	1401.8232	0.82315184	3396	Q9BRT8;Q8IUF1;Q5RIA9;Q5JTY5;Q4V339	CBWD1;CBWD2;CBWD5;CBWD3;CBWD6	COBW domain-containing protein 1;COBW domain-containing protein 2;COBW domain-containing protein 5;COBW domain-containing protein 3;COBW domain-containing protein 6	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	88.846	87.262	2	0.0023774	43930	160513_QHF_FH_JSI10Kac_6	65.241	51.422			1.0585	1.1817	10.683	5	0	Median	1.417	1.2114	NaN	1	0	Median	0.90581	1.0823	12.426	2	0	Median	1.0585	0.97607	NaN	1	0	Median	1.2082	1.1901	NaN	1	0	Median	114860000	61791000	53067000	8084200	3311200	4773000	50771000	33129000	17642000	28566000	12239000	16327000	27437000	13113000	14325000	25691	3396	24332	160802;160803;160804;160805;160806	217726;217727	217727			2	
IPVTLNMK	1	Unmodified	914.52592	0.52592396	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.241	47.259	2	0.014012	41673	160511_QHF_FH_JSI10i_2	51.787	20.498			0.85966	0.99157	12.554	4	0	Median	1.1935	1.0026	NaN	1	0	Median	0.78723	0.98062	NaN	1	0	Median	0.77156	0.79245	NaN	1	0	Median	0.93876	1.0525	NaN	1	0	Median	431400000	236410000	194990000	75078000	34282000	40796000	88147000	52622000	35525000	158750000	89143000	69608000	109420000	60363000	49060000	25692	685	24333	160807;160808;160809;160810	217728;217729;217730;217731;217732	217732			5	
IPWFQYPIIYDIR	0	Unmodified	1722.9134	0.91336383	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.46		8	7						8	5	6	6	6	99.741	96.765	2;3	1.5147E-17	51445	160513_QHF_FH_JSI10Kac_6	122.46	118.49			1.125	1.0753	13.395	23	0	Median	1.2318	1.0462	6.1284	5	0	Median	0.89284	1.0702	11.414	6	0	Median	1.1394	1.0841	3.2703	6	0	Median	1.0021	1.0744	22.888	6	0	Median	16336000000	8026600000	8309100000	2633100000	1231600000	1401400000	3820500000	2016500000	1803900000	5014200000	2357900000	2656300000	4868000000	2420600000	2447400000	25693	4296	24334	160811;160812;160813;160814;160815;160816;160817;160818;160819;160820;160821;160822;160823;160824;160825;160826;160827;160828;160829;160830;160831;160832;160833	217733;217734;217735;217736;217737;217738;217739;217740;217741;217742;217743;217744;217745;217746;217747;217748;217749;217750;217751;217752;217753;217754;217755;217756;217757;217758;217759;217760;217761;217762;217763;217764	217763			32	
IPWSALK	1	Unmodified	813.47487	0.47487467	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			48.451	46.885	2	0.040857	39226	160511_QHF_FH_JSI10i_3	49.358	32.432			0.75606	0.85341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75606	0.85341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	403990000	255070000	148920000	0	0	0	403990000	255070000	148920000	0	0	0	0	0	0	25694	2517	24335	160834	217765	217765			1	
IPYKPNYSLNLWSIMK	2	Unmodified	1966.0386	0.038640698	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	90.003	85.166	3	0.0024951	42668	160513_QHF_FH_JSI9Kac_6	56.407	45.94			0.94342	0.97738	20.854	7	2	Median	0.94342	0.80389	NaN	1	0	Median	0.79559	0.93714	12.815	2	1	Median	1.0351	0.98517	1.1223	2	0	Median	0.81959	0.85209	45.415	2	1	Median	1747200000	905950000	841250000	496060000	237140000	258930000	583420000	334900000	248530000	427970000	205260000	222710000	239740000	128660000	111080000	25695	1201	24336	160835;160836;160837;160838;160839;160840;160841	217766;217767;217768;217769;217770;217771;217772;217773	217771			8	
IPYKPNYSLNLWSIMK	2	Oxidation (M)	1982.0336	0.03355532	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			79.28	73.639	3	0.048383	40220	160513_QHF_FH_JSI10Kac_6	30.152	14.029			0.67385	0.7715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67385	0.7715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84510000	50585000	33926000	0	0	0	84510000	50585000	33926000	0	0	0	0	0	0	25696	1201	24336	160842	217774	217774			1	
IPYLPITNFNQNWQDGK	1	Unmodified	2047.0163	0.016325351	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.68	2	7	6							2	3	5	5	94.913	94.581	2;3	3.916E-06	81763	160511_QHF_FH_JSI12i_3	101.04	95.851			0.99894	1.1337	17.28	15	6	Median	1.3898	1.1876	25.986	2	1	Median	0.97142	1.2041	18.813	3	0	Plateau	0.99894	1.0442	8.2665	5	2	Median	0.99031	1.0192	15.679	5	3	Median	1204200000	551790000	652410000	33665000	16669000	16996000	139270000	56021000	83251000	569120000	263760000	305360000	462150000	215350000	246800000	25697	512	24337	160843;160844;160845;160846;160847;160848;160849;160850;160851;160852;160853;160854;160855;160856;160857	217775;217776;217777;217778;217779;217780;217781;217782;217783;217784;217785;217786;217787;217788	217788			14	
IPYSDVNIGTGVAHPPR	0	Unmodified	1791.9268	0.92678206	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	51.856	51.739	3	0.022405	44415	160511_QHF_FH_JSI12i_3	43.261	35.084			1.114	1.163	10.403	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1607	1.0805	NaN	1	0	Median	1.0692	1.2517	NaN	1	0	Median	150250000	62293000	87958000	0	0	0	0	0	0	77669000	30430000	47239000	72582000	31863000	40719000	25698	5374	24338	160858;160859	217789	217789			0	
IPYTTVLR	0	Unmodified	961.55967	0.55966693	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		45.964	45.183	2	0.048325	39859	160511_QHF_FH_JSI11i_3	37.646	11.537			1.0745	1.1157	0.12423	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97712	1.1147	NaN	1	0	Median	1.1815	1.1167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	418780000	191010000	227770000	0	0	0	155410000	74052000	81363000	263360000	116960000	146400000	0	0	0	25699	2277	24339	160860;160861	217790;217791	217790			2	
IQAAASTPTNATAASDANTGDR	0	Unmodified	2102.9829	0.98285297	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.4	5.39	3				2					1	2	2		32.817	26.935	2;3	7.6442E-34	24118	160511_QHF_FH_JSI11i_1	154.6	118.86			0.6902	0.77023	17.727	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78373	0.88285	20.328	2	1	Median	1.1285	1.0566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24136000	16656000	7479300	0	0	0	22514000	15887000	6627300	1621400	769440	852000	0	0	0	25700	1689	24340	160862;160863;160864;160865;160866	217792;217793;217794;217795;217796;217797	217792			6	
IQAAASTPTNATAASDANTGDRGQTNNAASASASNST	0	Unmodified	3464.5636	0.56360229	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			32.164	31.829	3	0.029084	28386	160511_QHF_FH_JSI10i_1	20.78	19.056			0.58831	0.66856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58831	0.66856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24054000	16230000	7823800	0	0	0	24054000	16230000	7823800	0	0	0	0	0	0	25701	1689	24341	160867	217798	217798			1	
IQADEVIAILDQEQQGK	1	Unmodified	1896.9793	0.97927114	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								2	2	3	2	94.945	94.67	3	4.7491E-05	86099	160511_QHF_FH_JSI11i_1	71.143	61.085			0.89048	0.90223	27.377	8	5	Median	0.87821	0.74371	23.114	2	2	Median	0.77	0.91055	5.737	2	1	Median	0.93676	0.93545	0.90352	2	0	Median	1.1476	1.2117	47.672	2	2	Median	106520000	56022000	50501000	19154000	10505000	8648900	27966000	15538000	12428000	35033000	17564000	17469000	24370000	12415000	11955000	25702	3407	24342	160868;160869;160870;160871;160872;160873;160874;160875;160876	217799;217800;217801;217802;217803;217804;217805;217806;217807;217808;217809;217810;217811;217812	217800			14	
IQAEFEK	1	Unmodified	863.43888	0.43888309	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		23.899	23.614	2	0.016874	20430	160511_QHF_FH_JSI11i_1	55.676	21.938			0.88042	1.036	128.42	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88042	1.036	128.42	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292910000	151400000	141510000	0	0	0	292910000	151400000	141510000	0	0	0	0	0	0	25703	2319	24343	160877;160878;160879	217813;217814;217815	217813			3	
IQAGAEAK	1	Unmodified	786.42357	0.42356738	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	7.5652	4.9241	2	0.0055642	4730	160511_QHF_FH_JSI12i_1	65.252	14.286			1.0917	1.1504	12.227	9	1	Median	1.3866	1.1415	NaN	1	0	Median	1.0889	1.2993	17.599	3	1	Median	1.0494	1.0134	7.0593	3	0	Plateau	1.112	1.1726	0.33839	2	0	Median	2486300000	1145700000	1340700000	725510000	268400000	457110000	618070000	333120000	284960000	644390000	318400000	325990000	498330000	225730000	272600000	25704	5436	24344	160880;160881;160882;160883;160884;160885;160886;160887;160888	217816;217817;217818;217819;217820;217821;217822;217823;217824;217825	217817			10	
IQAGEEK	1	Unmodified	773.39193	0.3919329	3092	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.9248	4.8255	2	0.01187	2573	160511_QHF_FH_JSI11i_1	60.358	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25705	3092	24345	160889	217826	217826			1	
IQAGEGETAVLNQLQEK	1	Unmodified	1826.9374	0.93740633	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	63.674	63.17	2	0.00026037	57537	160511_QHF_FH_JSI12i_1	69.602	46.226			1.0992	1.1894	35.898	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78071	0.92278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5477	1.5331	NaN	1	0	Median	30536000	16846000	13690000	0	0	0	15697000	10235000	5462100	0	0	0	14840000	6611900	8227900	25706	2627	24346	160890;160891;160892	217827;217828;217829;217830	217829			4	
IQAGEIGEMK	1	Unmodified	1074.5379	0.53794521	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	35.729	34.942	2	0.0013026	30518	160511_QHF_FH_JSI9i_2	71.349	36.054			0.90953	1.0393	28.84	6	1	Median	0.91383	0.75515	NaN	1	0	Median	0.85862	1.0393	5.3278	2	0	Median	1.188	1.166	NaN	1	0	Median	0.88505	0.95452	55.379	2	1	Median	964570000	511360000	453210000	153460000	75838000	77621000	284890000	159050000	125840000	245340000	142620000	102720000	280890000	133850000	147030000	25707	1106	24347	160893;160894;160895;160896;160897;160898;160899	217831;217832;217833;217834;217835;217836;217837;217838;217839	217839			9	
IQAGEVSQPSK	1	Unmodified	1142.5932	0.5931519	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.66	2					1						1	2	19.453	16.886	2	0.014751	14479	160511_QHF_FH_JSI12i_1	51.872	21.28			0.75594	0.80489	6.9033	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93348	0.90463	NaN	1	1	Median	0.73968	0.80275	0.37507	2	2	Median	712630000	400480000	312150000	0	0	0	0	0	0	285150000	164860000	120290000	427480000	235620000	191860000	25708	4378	24348	160900;160901;160902	217840;217841;217842	217841			3	
IQAIAWAR	0	Unmodified	927.52904	0.5290355	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	52.753	46.932	2	0.00049384	39996	160511_QHF_FH_JSI12i_3	106.42	60.064			0.89516	0.94928	18.437	7	0	Median	1.3079	1.0836	2.3278	2	0	Median	0.72668	0.83822	35.056	2	0	Median	0.89516	0.857	NaN	1	0	Median	0.85927	0.9061	6.5843	2	0	Median	599050000	294790000	304260000	174300000	63757000	110540000	212700000	113660000	99037000	27472000	16059000	11413000	184580000	101310000	83272000	25709	1126	24349	160903;160904;160905;160906;160907;160908;160909	217843;217844;217845;217846;217847;217848;217849;217850	217848			8	
IQALAEETAQNLK	1	Unmodified	1427.762	0.76200815	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								1	1	2		47.003	46.584	2	0.00051584	41933	160511_QHF_FH_JSI10i_1	89.731	65.701			0.40172	0.38391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40172	0.38391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41341000	38350000	2991100	0	0	0	20481000	20481000	0	20861000	17870000	2991100	0	0	0	25710	3469	24350	160910;160911;160912;160913	217851;217852;217853;217854	217852			4	
IQALEAELQAVSHSK	1	Unmodified	1622.8628	0.86278482	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		65.231	64.463	3	0.00023928	56007	160511_QHF_FH_JSI11i_2	78.234	65.098			0.65079	0.5651	154.37	3	3	Median	0.65079	0.5651	NaN	1	1	Median	0.28494	0.34587	NaN	1	1	Median	6.15	6.194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90186000	45318000	44868000	14959000	8994500	5964700	50956000	33903000	17053000	24271000	2420100	21851000	0	0	0	25711	2269	24351	160914;160915;160916	217855;217856;217857	217856			3	
IQALLLTVLATLVK	1	Unmodified	1494.9749	0.97490145	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	102.03	92.694	2;3	7.6011E-61	53240	160513_QHF_FH_JSI11Kac_6	200.44	158.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25712	1193	24352	160917;160918;160919;160920;160921	217858;217859;217860;217861;217862	217858			5	
IQALNSLGAGPFSHMIK	1	Unmodified	1782.9451	0.94507466	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	80.358	79.514	3	5.5931E-08	65526	160511_QHF_FH_JSI9i_3	98.062	71.033			0.91131	0.8181	36.442	5	1	Median	0.9357	0.75662	NaN	1	0	Median	0.49221	0.56881	51.397	2	1	Median	1.0797	0.98478	NaN	1	0	Median	0.91131	0.91793	NaN	1	0	Median	335180000	196210000	138960000	57332000	25646000	31686000	150240000	110430000	39804000	91787000	38270000	53518000	35820000	21863000	13957000	25713	5520	24353	160922;160923;160924;160925;160926;160927	217863;217864;217865;217866;217867;217868;217869;217870;217871;217872;217873	217872			11	
IQALQQQADEAEDR	0	Unmodified	1613.7645	0.76452734	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	3	2	34.863	30.117	2;3	1.2691E-98	26827	160511_QHF_FH_JSI10i_1	264.84	258.87			0.86827	0.88451	31.999	8	1	Median	0.91871	0.7602	NaN	1	0	Median	0.74172	0.87156	11.684	2	0	Median	1.398	1.362	41.662	3	1	Median	0.95087	1.0078	28.057	2	0	Median	2921200000	1408700000	1512500000	547060000	223050000	324010000	814370000	436920000	377450000	759250000	331160000	428090000	800510000	417550000	382960000	25714	2069	24354	160928;160929;160930;160931;160932;160933;160934;160935	217874;217875;217876;217877;217878;217879;217880;217881;217882;217883;217884;217885;217886	217881			13	
IQALQQQADEAEDRAQGLQR	0	Unmodified	2267.1254	0.12543488	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	50.235	49.398	3	5.3594E-34	43511	160511_QHF_FH_JSI10i_2	196.06	181.06			1.174	1.2176	40.224	12	0	Median	1.2119	1.0414	74.995	3	0	Plateau	1.0084	1.2273	18.532	3	0	Median	1.2012	1.213	7.8685	3	0	Median	1.0806	1.1883	6.2295	3	0	Median	2833800000	1301000000	1532800000	541520000	176490000	365030000	1274700000	691400000	583270000	710720000	289740000	420980000	306920000	143350000	163560000	25715	2069	24355	160936;160937;160938;160939;160940;160941;160942;160943;160944;160945;160946;160947	217887;217888;217889;217890;217891;217892;217893;217894;217895;217896;217897;217898;217899;217900;217901;217902;217903;217904;217905;217906	217904			20	
IQASGILQLFASLLTPQSSCK	1	Unmodified	2261.209	0.2089535	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.34	95.619	3	0.0004486	56459	160513_QHF_FH_JSI10Kac_6	95.996	83.505			0.94416	1.1315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94416	1.1315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124680000	62091000	62587000	0	0	0	124680000	62091000	62587000	0	0	0	0	0	0	25716	1769	24356	160948	217907	217907			1	
IQASTMAFK	1	Unmodified	995.511	0.51100218	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.37	6.55	2	4	4				2	3	4	5	4	5	5	41.584	36.741	2	9.3602E-05	31586	160511_QHF_FH_JSI12i_2	94.302	47.235			0.99769	0.95713	25.858	18	2	Median	1.1357	0.94594	8.7933	5	2	Median	0.7663	0.91895	14.255	3	0	Median	0.85803	0.87624	40.039	5	0	Median	0.97884	1.0172	27.29	5	0	Median	10848000000	5205200000	5643000000	2417100000	1029200000	1387900000	1913800000	1058700000	855010000	3339000000	1669200000	1669800000	3178300000	1448100000	1730300000	25717	1470	24357	160949;160950;160951;160952;160953;160954;160955;160956;160957;160958;160959;160960;160961;160962;160963;160964;160965;160966;160967	217908;217909;217910;217911;217912;217913;217914;217915;217916;217917;217918;217919;217920;217921;217922;217923;217924;217925;217926;217927;217928;217929;217930;217931;217932;217933;217934;217935;217936;217937	217912			30	
IQAYDYLECSAK	1	Unmodified	1459.6653	0.66533057	2016	P62745	RHOB	Rho-related GTP-binding protein RhoB	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	53.681	53.189	2	0.011903	48077	160511_QHF_FH_JSI11i_1	55.426	39.172			1.5758	1.6187	35.035	3	3	Median	NaN	NaN	NaN	0	0	Median	1.8524	2.2224	NaN	1	1	Median	1.129	1.104	NaN	1	1	Median	1.5758	1.6187	NaN	1	1	Median	261970000	98122000	163850000	0	0	0	82013000	29500000	52513000	83315000	37459000	45856000	96644000	31164000	65481000	25718	2016	24358	160968;160969;160970	217938;217939;217940	217938			3	
IQDALSTVLQYAEDVLSGK	1	Unmodified	2049.063	0.063000772	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.45		10	4						1	3	3	4	5	104.1	103.43	2;3	1.2432E-117	91860	160511_QHF_FH_JSI11i_2	325.46	264.97			1.0067	1.0861	15.511	15	5	Median	1.0676	0.91716	24.791	3	1	Plateau	0.92989	1.1867	15.272	3	2	Median	1.0082	0.99418	6.2792	4	0	Median	0.9989	1.1399	15.651	5	2	Median	641280000	312360000	328930000	100970000	44564000	56409000	44681000	23117000	21564000	336100000	166400000	169700000	159530000	78280000	81250000	25719	120	24359	160971;160972;160973;160974;160975;160976;160977;160978;160979;160980;160981;160982;160983;160984;160985	217941;217942;217943;217944;217945;217946;217947;217948;217949;217950;217951;217952;217953;217954;217955;217956;217957;217958;217959;217960;217961;217962;217963;217964	217955			24	
IQDFNDEK	1	Unmodified	1007.456	0.45598972	2973	Q5THJ4	VPS13D	Vacuolar protein sorting-associated protein 13D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	6									1	1	1	3	15.924	15.405	2	0.0048706	12883	160511_QHF_FH_JSI10i_1	65.676	26.013			1.122	1.0066	41.099	4	1	Median	1.6086	1.3178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78258	0.76498	NaN	1	0	Median	1.0916	1.1599	58.137	2	1	Median	1049200000	488200000	561030000	312480000	135710000	176770000	0	0	0	221500000	127430000	94067000	515250000	225060000	290190000	25720	2973	24360	160986;160987;160988;160989;160990;160991	217965;217966;217967;217968	217967			4	
IQDHQVVINCAIPK	1	Unmodified	1633.861	0.86101068	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	44.635	43.844	2;3	0.00017477	37633	160511_QHF_FH_JSI11i_2	109.24	82.722			1.2989	1.3864	39.252	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0229	1.0504	NaN	1	0	Median	1.6493	1.8299	NaN	1	0	Median	246710000	135720000	110990000	0	0	0	0	0	0	168520000	98962000	69558000	78190000	36755000	41435000	25721	3570	24361	160992;160993;160994	217969;217970;217971	217971			3	
IQDKEGIPPDQQR	1	Acetyl (K)	1564.7845	0.7845345	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	0	0	1			By MS/MS		13	0						3						3		39.777	30.69	2	0.00084833	17469	160513_QHF_FH_JSI11Kac_3	88.441	28.007			0.093579	0.088798	188.05	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.093579	0.088798	188.05	2	1	Median	NaN	NaN	NaN	0	0	Median	7149900	6539700	610250	0	0	0	0	0	0	7149900	6539700	610250	0	0	0	25722	2042	24362	160995;160996;160997	217972;217973;217974	217973	2103		3	
IQDLIDDK	1	Unmodified	958.49713	0.49712625	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	38.969	35.54	2	0.00069356	31804	160511_QHF_FH_JSI11i_1	99.802	56.556			1.1309	1.1208	5.837	6	0	Median	1.2836	1.0444	NaN	1	0	Median	0.9201	1.1096	NaN	1	0	Median	1.1534	1.1127	6.9068	2	0	Median	1.097	1.1744	5.1962	2	0	Median	2100700000	1048600000	1052100000	387550000	191510000	196040000	611390000	334270000	277120000	631940000	292410000	339530000	469840000	230460000	239380000	25723	2692	24363	160998;160999;161000;161001;161002;161003	217975;217976;217977;217978;217979;217980;217981	217975			7	
IQDLPPVDLSLVNK	1	Unmodified	1549.8716	0.87155859	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	84.548	84.139	2;3	9.9169E-10	75000	160511_QHF_FH_JSI9i_1	146.16	120.05			0.93625	0.96071	3.6804	7	2	Median	1.167	0.95013	NaN	1	0	Median	0.84284	0.97886	1.046	2	0	Median	1.0321	0.99713	5.2626	2	1	Median	0.92416	0.93292	1.3648	2	1	Median	679320000	340450000	338870000	134110000	60587000	73523000	191240000	101190000	90045000	194010000	93991000	100010000	159970000	84684000	75286000	25724	2757	24364	161004;161005;161006;161007;161008;161009;161010	217982;217983;217984;217985;217986;217987;217988;217989;217990;217991;217992;217993;217994;217995;217996;217997;217998;217999;218000;218001;218002;218003;218004;218005;218006;218007;218008;218009	218007			28	
IQDLSLLYQLFSR	0	Unmodified	1594.8719	0.87189295	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	102.2	102.21	2;3	5.3661E-05	88962	160511_QHF_FH_JSI12i_3	110.08	84.691			0.80592	0.80159	52.297	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3193	1.2593	NaN	1	0	Median	1.2872	1.3252	73.842	2	0	Median	198650000	94733000	103910000	0	0	0	0	0	0	61382000	21893000	39489000	137260000	72840000	64424000	25725	2457	24365	161011;161012;161013	218010;218011;218012	218011			2	
IQDPVLQAVTSQTSLPGH	0	Unmodified	1889.9847	0.98469087	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	80.078	79.502	3	0.00010069	70662	160511_QHF_FH_JSI9i_1	40.614	34.604			1.0882	1.0697	4.9552	3	0	Median	1.2041	0.98365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0882	1.0697	NaN	1	0	Median	1.0522	1.0737	NaN	1	0	Median	103870000	54744000	49125000	26934000	13704000	13230000	0	0	0	44958000	24239000	20719000	31977000	16801000	15176000	25726	5245	24366	161014;161015;161016	218013;218014;218015;218016	218016			3	
IQDRQEAIDWLLGLAVR	0	Unmodified	1995.0902	0.090158996	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	16	0									3	1		1	1	94.247	84.989	3	6.8066E-05	47891	160513_QHF_FH_JSI9Kac_6	81.723	62.687			1.2991	1.3661	20.685	3	0	Plateau	1.5105	1.3077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9385	0.936	NaN	1	0	Median	1.2991	1.3661	NaN	1	0	Median	157060000	77641000	79417000	47846000	21028000	26818000	0	0	0	37369000	21144000	16225000	71844000	35470000	36374000	25727	5486	24367	161017;161018;161019	218017	218017			1	
IQDTIEITGTFK	1	Unmodified	1364.7187	0.71874635	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.082	63.456	2	0.00026612	57878	160511_QHF_FH_JSI12i_1	76.332	55.385			0.89029	1.054	7.0743	4	0	Linear	1.2968	1.0594	NaN	1	0	Median	0.78636	0.9285	NaN	1	0	Median	1.0933	1.0486	NaN	1	0	Median	1.0273	1.0894	NaN	1	0	Median	138920000	74114000	64802000	14929000	7780700	7148100	46043000	25407000	20636000	37335000	19587000	17749000	40609000	21339000	19270000	25728	228	24368	161020;161021;161022;161023	218018;218019;218020;218021;218022;218023	218021			6	
IQDTNVTSEDK	1	Unmodified	1248.5834	0.58337508	4741	Q9H6D7	HAUS4	HAUS augmin-like complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.559	14.051	2	0.0030558	11819	160511_QHF_FH_JSI12i_1	70.028	49.508			0.7873	0.77414	30.01	3	2	Plateau	1.7376	1.4105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7873	0.77414	NaN	1	0	Median	0.99332	1.06	NaN	1	1	Median	71414000	35805000	35608000	20942000	7630800	13311000	0	0	0	27337000	13227000	14110000	23134000	14947000	8187400	25729	4741	24369	161024;161025;161026;161027	218024;218025;218026;218027	218025			4	
IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK	1	Unmodified	3332.6996	0.69961417	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	101.7	101.59	3;4	3.9494E-46	92333	160511_QHF_FH_JSI11i_1	146.08	135.47			1.1569	1.1346	17.826	6	0	Median	1.3203	1.0892	NaN	1	0	Median	1.207	1.4119	25.148	2	0	Median	1.0983	1.0845	NaN	1	0	Median	1.1069	1.1541	14.321	2	0	Median	2255700000	1088900000	1166800000	380890000	148950000	231940000	631750000	323940000	307820000	407800000	207370000	200430000	835290000	408640000	426650000	25730	1786	24370	161028;161029;161030;161031;161032;161033;161034	218028;218029;218030;218031;218032;218033;218034;218035	218029			8	
IQDWQSMYQSTHIPIPK	1	Unmodified	2071.0197	0.01969617	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.209	77.942	3	0.0081906	67713	160511_QHF_FH_JSI12i_3	44.816	29.661			2.3259	2.35	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3259	2.35	NaN	1	1	Median	139920000	42206000	97716000	0	0	0	0	0	0	0	0	0	139920000	42206000	97716000	25731	2302	24371	161035	218036	218036			1	
IQDYDVSLDK	1	Unmodified	1194.5768	0.57683314	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	45.969	41.765	2	0.00042952	37789	160511_QHF_FH_JSI12i_1	74.841	47.587			1.0023	1.0583	16.409	5	2	Median	0.99052	0.8207	NaN	1	1	Median	1.0023	1.171	NaN	1	0	Median	1.0278	0.99764	8.3453	2	1	Median	1.1716	1.2271	NaN	1	0	Median	664910000	327700000	337210000	199500000	93413000	106090000	2417800	1374200	1043600	221120000	112350000	108770000	241870000	120560000	121310000	25732	3922	24372	161036;161037;161038;161039;161040;161041	218037;218038;218039;218040;218041;218042	218039			6	
IQEAGTEVVK	1	Unmodified	1072.5764	0.57643921	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.67	4	3	1		1	4	1			3	3	4	4	23.815	19.343	2	7.744E-05	17664	160511_QHF_FH_JSI9i_1	87.806	37.68			0.90827	0.97183	21.205	14	1	Median	0.94665	0.75159	25.204	3	0	Median	0.90191	1.0869	10.459	3	0	Median	1.0141	0.99641	22.48	4	1	Median	0.81137	0.87946	17.486	4	0	Median	9017900000	4183500000	4834400000	2275800000	1005300000	1270500000	1964300000	1015400000	948930000	2182400000	950200000	1232200000	2595400000	1212600000	1382800000	25733	1504	24373	161042;161043;161044;161045;161046;161047;161048;161049;161050;161051;161052;161053;161054;161055	218043;218044;218045;218046;218047;218048;218049;218050;218051;218052;218053;218054;218055;218056;218057;218058;218059;218060	218054			18	
IQEALNCLVK	1	Unmodified	1186.638	0.63799361	2794	Q2NKX8	ERCC6L	DNA excision repair protein ERCC-6-like	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	68.371	67.573	2	0.055109	58378	160511_QHF_FH_JSI12i_3	42.109	0			0.34889	0.36836	160.53	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34889	0.36836	160.53	2	2	Median	835260000	290650000	544610000	0	0	0	0	0	0	0	0	0	835260000	290650000	544610000	25734	2794	24374	161056;161057	218061;218062	218062			2	
IQEEISQK	1	Unmodified	973.50803	0.50802529	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.511	14.069	2	0.0059603	11859	160511_QHF_FH_JSI12i_1	69.423	13.874			0.91459	0.96666	25.288	4	0	Median	1.1832	0.98019	NaN	1	0	Median	0.81796	0.95331	NaN	1	0	Median	1.0226	1.0007	NaN	1	0	Median	0.5609	0.59062	NaN	1	0	Median	349430000	174210000	175210000	76402000	33015000	43387000	97599000	46475000	51125000	84618000	41656000	42962000	90806000	53065000	37740000	25735	4886	24375	161058;161059;161060;161061	218063;218064;218065;218066;218067;218068;218069	218066			7	
IQEENVIPR	0	Unmodified	1096.5877	0.58767259	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.663	5	4	1							3	2	3	2	34.653	33.868	2	0.00015606	29713	160511_QHF_FH_JSI9i_1	88.819	70.999			1.1226	1.0508	13.072	10	2	Median	1.2381	1.0155	6.5505	3	0	Plateau	0.92409	1.1058	7.4029	2	0	Median	1.1226	1.0173	8.0165	3	2	Plateau	1.0898	1.1551	34.2	2	0	Median	2862900000	1297900000	1565100000	595550000	234720000	360830000	635500000	315420000	320080000	1075800000	459350000	616490000	556020000	288370000	267660000	25736	1544	24376	161062;161063;161064;161065;161066;161067;161068;161069;161070;161071	218070;218071;218072;218073;218074;218075;218076;218077;218078;218079;218080;218081;218082;218083;218084	218078			15	
IQEFCNLHQSK	1	Unmodified	1402.6663	0.66633362	1797	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	23.726	23.708	2;3	0.010948	19623	160511_QHF_FH_JSI12i_3	46.158	15.085			2.1376	2.1329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1376	2.1329	NaN	1	0	Median	124910000	45666000	79242000	0	0	0	0	0	0	0	0	0	124910000	45666000	79242000	25737	1797	24377	161072;161073	218085;218086	218086			2	
IQEFKPSNK	2	Unmodified	1089.5819	0.58185893	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	13.339	13.387	2;3	0.033353	10342	160511_QHF_FH_JSI12i_3	62.823	24.031			1.0702	1.0196	11.195	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0702	1.0196	NaN	1	0	Median	1.081	1.0973	14.65	2	0	Median	436060000	208810000	227250000	0	0	0	0	0	0	54256000	23173000	31083000	381800000	185630000	196170000	25738	5	24378	161074;161075;161076	218087;218088	218087			2	
IQEGVFDINNEANGIK	1	Unmodified	1759.8741	0.87407779	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								2	4	3	3	65.804	65.103	2;3	6.5764E-30	57994	160511_QHF_FH_JSI9i_1	225.23	205.13			0.88531	1.0002	28.955	10	3	Median	1.2648	1.0235	0.7194	2	0	Median	0.84942	1.0187	3.4657	3	1	Plateau	0.84214	0.81871	4.4206	2	0	Median	0.95089	0.99362	49.594	3	2	Median	3183100000	1682300000	1500800000	684230000	282830000	401390000	908860000	557110000	351750000	770660000	432660000	338000000	819340000	409710000	409630000	25739	1930	24379	161077;161078;161079;161080;161081;161082;161083;161084;161085;161086;161087;161088	218089;218090;218091;218092;218093;218094;218095;218096;218097;218098;218099;218100;218101;218102;218103;218104;218105;218106;218107;218108;218109;218110	218106			22	
IQEHFFFATFHPLK	1	Unmodified	1760.9039	0.90386178	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	3	3	78.152	73.092	3;4	4.5129E-06	38846	160513_QHF_FH_JSI10Kac_6	102.38	85.884			1.0507	1.0619	7.7232	10	2	Median	1.2963	1.1071	2.9697	2	1	Median	0.91033	1.0912	10.378	2	0	Median	1.1529	1.0838	2.8043	3	1	Plateau	0.99408	1.0459	10.965	3	0	Median	1515700000	746350000	769400000	311380000	134620000	176760000	683490000	345650000	337840000	178400000	97877000	80526000	342470000	168200000	174270000	25740	2397	24380	161089;161090;161091;161092;161093;161094;161095;161096;161097;161098	218111;218112;218113;218114;218115;218116;218117;218118;218119;218120;218121;218122;218123;218124;218125;218126	218124			16	
IQEHFNK	1	Unmodified	914.46102	0.46101552	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		6	3						3	2	2	5	3	11.435	9.2769	2;3	0.0039309	7603	160511_QHF_FH_JSI11i_3	58.981	30.469			0.9855	1.038	19.768	12	5	Median	1.2169	1.0288	39.525	2	1	Median	0.80302	0.96602	10.613	2	1	Median	1.0653	1.0434	18.323	5	1	Median	0.86371	0.93365	21.217	3	2	Median	2079000000	983450000	1095600000	236030000	111320000	124710000	338880000	178830000	160050000	1132700000	532920000	599770000	371430000	160390000	211040000	25741	5017;5423	24381	161099;161100;161101;161102;161103;161104;161105;161106;161107;161108;161109;161110	218127;218128;218129;218130;218131;218132;218133;218134;218135;218136;218137;218138	218129			12	
IQEHFNKK	2	Acetyl (K)	1084.5665	0.56654322	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	1	0	0	1		By MS/MS	By MS/MS		15.5	0.5								1	1		1	1		23.808	14.377	3	0.046844	9235	160513_QHF_FH_JSI10Kac_6	36.381	13.74			0.069967	0.068805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.069967	0.068805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3703900	3522100	181790	0	0	0	0	0	0	3703900	3522100	181790	0	0	0	25742	5017;5423	24382	161111;161112	218139;218140	218140			2	
IQEIIEQLDVTTSEYEK	1	Unmodified	2037.0154	0.015381878	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	1	4	82.63	82.141	2;3	7.8308E-22	74683	160511_QHF_FH_JSI12i_1	216.15	173.59			4.8352	3.9155	186.72	9	9	Median	1.0447	0.84138	217.46	2	2	Median	0.88847	1.0531	289.61	2	2	Median	10.467	10.021	NaN	1	1	Median	1.2398	1.2717	184.39	4	4	Median	573000000	296320000	276670000	91036000	39958000	51078000	178550000	128190000	50355000	35858000	5477000	30381000	267560000	122700000	144860000	25743	980	24383	161113;161114;161115;161116;161117;161118;161119;161120;161121	218141;218142;218143;218144;218145;218146;218147;218148;218149;218150;218151;218152;218153	218142			13	
IQEILTQVK	1	Unmodified	1070.6336	0.63356015	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	44.68	43.978	2	0.0014852	39583	160511_QHF_FH_JSI11i_1	68.846	19.31			1.9476	1.6175	145.72	6	3	Median	1.9476	1.6175	136.3	2	1	Median	0.32995	0.39064	NaN	1	1	Median	7.4302	7.3328	19.613	2	0	Median	0.35826	0.37496	NaN	1	1	Median	1935000000	1533200000	401870000	330120000	234500000	95620000	844620000	757650000	86969000	173130000	19182000	153950000	587160000	521830000	65329000	25744	132	24384	161122;161123;161124;161125;161126;161127	218154;218155;218156;218157;218158	218154			5	
IQELAHELAAAK	1	Unmodified	1292.7089	0.70885036	515	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.626	38.261	3	0.0095324	32547	160511_QHF_FH_JSI12i_2	45.28	23.287			1.9503	2.0828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9503	2.0828	NaN	1	1	Median	41039000	13611000	27428000	0	0	0	0	0	0	0	0	0	41039000	13611000	27428000	25745	515	24385	161128	218159	218159			1	
IQELEDLLAK	1	Unmodified	1170.6496	0.64960415	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								1	3	2	3	72.98	72.205	2	3.714E-05	63572	160511_QHF_FH_JSI11i_2	105.4	46.151			4.5231	4.4673	193.76	9	9	Median	6.7344	5.914	NaN	1	1	Median	4.5518	5.6938	230.57	3	3	Median	0.81426	0.81311	240.94	2	2	Median	0.26167	0.27426	208.21	3	3	Median	1450000000	694850000	755170000	131620000	24685000	106940000	471470000	189800000	281670000	287930000	137500000	150430000	559000000	342870000	216130000	25746	1180	24386	161129;161130;161131;161132;161133;161134;161135;161136;161137	218160;218161;218162;218163;218164;218165;218166;218167;218168	218166			9	
IQELENLPGSLAGDLR	0	Unmodified	1723.9105	0.9104633	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	3	1	1	83.324	82.783	2	2.4593E-05	71449	160511_QHF_FH_JSI12i_2	109.18	77.114			0.93323	1.0241	24.899	6	1	Median	1.2053	1.0205	NaN	1	0	Median	0.69497	0.84275	36.591	3	1	Plateau	0.98474	1.0278	NaN	1	0	Median	0.84186	0.90361	NaN	1	0	Median	194090000	102470000	91623000	40836000	21866000	18970000	89304000	42003000	47301000	37184000	22285000	14899000	26767000	16314000	10453000	25747	1737	24387	161138;161139;161140;161141;161142;161143	218169;218170;218171;218172;218173;218174;218175;218176;218177	218170			9	
IQELFHVEPGLQR	0	Unmodified	1564.8362	0.83617614	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	60.138	59.404	2;3	0.0013431	51679	160511_QHF_FH_JSI11i_2	53.377	40.751			0.7565	0.8534	22.646	5	1	Median	0.65251	0.56139	NaN	1	0	Median	0.7565	0.94133	NaN	1	0	Median	0.88856	0.87548	18.262	2	1	Median	0.761	0.8534	NaN	1	0	Median	671270000	323220000	348050000	121580000	63482000	58094000	213180000	113950000	99234000	188440000	67000000	121440000	148080000	78788000	69288000	25748	4259	24388	161144;161145;161146;161147;161148	218178;218179;218180	218180			3	
IQELGDLYTPAPGR	0	Unmodified	1528.7886	0.78855725	5069	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.8	59.408	2	0.00064758	53751	160511_QHF_FH_JSI10i_1	84.718	50.339			1.0567	1.2363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0567	1.2363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72592000	35566000	37026000	0	0	0	72592000	35566000	37026000	0	0	0	0	0	0	25749	5069	24389	161149	218181	218181			1	
IQELQASQEAR	0	Unmodified	1271.647	0.64697839	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.11	19.952	2	0.0024974	16893	160511_QHF_FH_JSI9i_1	60.434	38.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25750	5720	24390	161150	218182	218182			1	
IQENALPMMLAEPPQNLIAQSQSGTGK	1	Unmodified	2865.4365	0.43646361	5017	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.74	100.62	3	2.0355E-14	91368	160511_QHF_FH_JSI11i_1	93.411	88.044			0.93245	0.97821	10.323	4	0	Median	1.38	1.126	NaN	1	0	Median	0.81218	0.9671	NaN	1	0	Median	0.90423	0.87614	NaN	1	0	Median	0.96155	0.98946	NaN	1	0	Median	301210000	151390000	149820000	69676000	33258000	36417000	75915000	41387000	34527000	97261000	49937000	47324000	58363000	26807000	31556000	25751	5017	24391	161151;161152;161153;161154	218183;218184;218185;218186;218187;218188	218184			6	
IQEPLFK	1	Unmodified	873.496	0.49600404	2735	Q16537;Q15173	PPP2R5E;PPP2R5B	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform	yes	no	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	43.465	42.525	2	0.04145	36479	160511_QHF_FH_JSI12i_2	46.663	24.893			0.9966	1.0118	16.018	3	0	Median	NaN	NaN	NaN	0	0	Median	0.67682	0.82685	NaN	1	0	Median	0.9966	1.0118	NaN	1	0	Median	1.0151	1.1345	NaN	1	0	Median	90613000	47187000	43426000	0	0	0	27186000	14475000	12710000	34335000	17911000	16424000	29092000	14801000	14291000	25752	2735	24392	161155;161156;161157	218189	218189			1	
IQEPNTFPAILR	0	Unmodified	1397.7667	0.76669959	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	2	4	2	72.053	71.568	2	0.00015562	62798	160511_QHF_FH_JSI11i_2	98.048	57.697			1.1115	1.0584	16.069	9	2	Median	1.2397	1.0584	NaN	1	0	Median	0.77817	0.92747	7.7438	2	0	Median	1.13	1.0698	15.542	4	2	Median	1.1131	1.1784	23.743	2	0	Median	1142200000	559110000	583070000	174520000	76630000	97893000	232610000	124860000	107750000	493910000	236770000	257140000	241130000	120850000	120280000	25753	1081	24393	161158;161159;161160;161161;161162;161163;161164;161165;161166	218190;218191;218192;218193;218194;218195;218196;218197;218198;218199	218196			10	
IQEQESSGEEDSDLSPEEREK	1	Unmodified	2420.0463	0.046300668	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.233	24.674	3	0.00069486	21901	160511_QHF_FH_JSI12i_1	47.808	44.71			0.9429	1.0417	15.968	4	0	Median	1.3971	1.1424	NaN	1	0	Median	0.84106	0.98042	NaN	1	0	Median	0.82418	0.80309	NaN	1	0	Median	1.0571	1.1067	NaN	1	0	Median	227400000	107230000	120170000	54781000	21470000	33311000	51337000	22500000	28838000	58395000	33763000	24632000	62889000	29499000	33390000	25754	1516	24394	161167;161168;161169;161170	218200;218201;218202;218203;218204;218205;218206	218201			7	
IQEQVQQTLAR	0	Unmodified	1312.7099	0.709913	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.535	28.973	2	0.020724	25962	160511_QHF_FH_JSI12i_1	49.3	9.9959			0.94397	0.96512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94397	0.96512	NaN	1	1	Median	68391000	34387000	34004000	0	0	0	0	0	0	0	0	0	68391000	34387000	34004000	25755	4330	24395	161171	218207	218207			1	
IQERDELAWK	1	Unmodified	1286.6619	0.66190017	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			3									2	1	33.598	33.561	2;3	0.0055054	29230	160511_QHF_FH_JSI11i_3	61.78	36.158			0.90816	0.83308	19.059	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78846	0.71596	21.427	2	0	Median	0.8522	0.8747	NaN	1	0	Median	284740000	160660000	124080000	0	0	0	0	0	0	186640000	105940000	80696000	98105000	54719000	43386000	25756	1357	24396	161172;161173;161174	218208;218209;218210;218211	218209			4	
IQESHPELR	0	Unmodified	1107.5673	0.5672715	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	14.405	13.816	2;3	0.00078496	10927	160511_QHF_FH_JSI11i_2	74.173	40.376			1.1037	1.0959	12.862	7	2	Median	1.1037	0.93142	NaN	1	0	Median	0.86998	1.0629	4.3236	2	2	Median	1.2533	1.2561	9.9795	2	0	Median	1.0341	1.1377	14.592	2	0	Median	750520000	378320000	372200000	72149000	36615000	35533000	169000000	97978000	71018000	346990000	159950000	187040000	162390000	83782000	78605000	25757	4806	24397	161175;161176;161177;161178;161179;161180;161181	218212;218213;218214;218215;218216;218217;218218;218219;218220;218221	218219			10	
IQESHPELRR	0	Unmodified	1263.6684	0.66838253	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		11.535	10.939	3;4	0.00082017	8462	160511_QHF_FH_JSI9i_3	49.5	36.924			1.3074	1.0638	25.083	5	0	Median	1.3147	1.0844	2.7065	2	0	Median	0.66145	0.76501	7.3594	2	0	Median	1.4222	1.3498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	390230000	203630000	186600000	184020000	83935000	100080000	164470000	102000000	62461000	41750000	17689000	24060000	0	0	0	25758	4806	24398	161182;161183;161184;161185;161186	218222;218223;218224;218225;218226	218226			5	
IQESPGK	1	Unmodified	757.39702	0.39701828	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.7954	4.1292	2	0.016664	3952	160511_QHF_FH_JSI11i_1	62.714	18.103			1.0269	1.0038	12.757	6	0	Median	1.2868	1.0633	NaN	1	0	Median	0.72002	0.85438	7.6248	2	0	Median	1.0269	1.0038	0.59411	2	0	Median	1.1225	1.1661	NaN	1	0	Median	1792700000	955470000	837220000	366940000	158430000	208510000	476920000	281910000	195010000	400730000	219330000	181400000	548100000	295800000	252300000	25759	1674	24399	161187;161188;161189;161190;161191;161192	218227;218228;218229;218230;218231;218232;218233;218234;218235;218236	218228			10	
IQESYGDVYGICTK	1	Unmodified	1631.7501	0.75012283	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.409	51.998	2	2.3942E-06	46845	160511_QHF_FH_JSI10i_1	128.21	91.789			1.0068	1.0797	3.7604	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93383	1.1088	NaN	1	0	Median	1.0856	1.0514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89124000	44797000	44328000	0	0	0	43236000	26292000	16944000	45888000	18505000	27384000	0	0	0	25760	1168	24400	161193;161194;161195	218237;218238;218239;218240	218238			4	
IQETQAELPR	0	Unmodified	1183.6197	0.619701	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.129	28.535	2	0.00059875	25265	160511_QHF_FH_JSI10i_1	70.908	57.871			0.89894	0.85065	9.0241	4	0	Median	1.0172	0.84277	NaN	1	0	Median	0.65954	0.78971	NaN	1	0	Median	0.88532	0.8586	NaN	1	0	Median	0.91276	0.9793	NaN	1	0	Median	1040600000	562770000	477810000	193970000	91833000	102130000	265490000	164620000	100870000	299440000	153870000	145570000	281680000	152450000	129230000	25761	2545	24401	161196;161197;161198;161199	218241;218242;218243;218244;218245	218245			5	
IQEVADELQK	1	Unmodified	1171.6085	0.60846762	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	34.413	33.809	2	5.1723E-05	30535	160511_QHF_FH_JSI12i_1	104.22	45.241			1.0484	1.1139	179.51	8	8	Median	1.6618	1.3658	267.53	2	2	Median	1.2265	1.4648	243.27	2	2	Median	1.372	1.3313	240.08	2	2	Median	1.0484	1.1139	190.66	2	2	Median	5673900000	2103500000	3570400000	1193000000	401700000	791350000	1560300000	613760000	946490000	1477400000	490070000	987280000	1443200000	597940000	845300000	25762	1137	24402	161200;161201;161202;161203;161204;161205;161206;161207;161208	218246;218247;218248;218249;218250;218251;218252;218253;218254;218255	218250			10	
IQEVGEPSK	1	Unmodified	985.50803	0.50802529	4269	Q99442	SEC62	Translocation protein SEC62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	15.023	14.515	2	0.010803	12011	160511_QHF_FH_JSI10i_1	49.536	17.602			1.1147	1.1119	33.154	5	0	Median	2.0646	1.6685	NaN	1	0	Median	0.72712	0.86696	35.187	2	0	Median	1.1147	1.1068	NaN	1	0	Median	1.2788	1.3158	NaN	1	0	Median	305760000	145690000	160070000	51099000	19905000	31194000	139950000	80538000	59408000	42699000	17739000	24960000	72021000	27513000	44508000	25763	4269	24403	161209;161210;161211;161212;161213	218256;218257;218258;218259	218257			4	
IQEYCYDNIHFMK	1	Unmodified	1759.7698	0.76981241	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.676	58.173	2	0.016532	50510	160511_QHF_FH_JSI11i_2	51.092	39.226			0.82597	0.77789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82597	0.77789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16369000	6700100	9669200	0	0	0	0	0	0	16369000	6700100	9669200	0	0	0	25764	3218	24404	161214	218260	218260			1	
IQEYCYDNIHFMKAFQK	2	Acetyl (K)	2276.0394	0.039445334	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.25	70.936	3	0.00031225	38918	160513_QHF_FH_JSI11Kac_6	78.441	68.88			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12923000	12923000	0	0	0	0	0	0	0	12923000	12923000	0	0	0	0	25765	3218	24405	161215	218261	218261	2802		1	
IQFENNEDQDVNPLK	1	Unmodified	1801.8483	0.84825697	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	58.397	57.739	2	1.0682E-11	52266	160511_QHF_FH_JSI11i_1	110.08	77.131			1.7278	1.7786	10.236	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7278	1.7786	10.236	2	2	Median	166720000	59727000	106990000	0	0	0	0	0	0	0	0	0	166720000	59727000	106990000	25766	648	24406	161216;161217;161218;161219	218262;218263;218264;218265	218262			4	
IQFGTLSDFFDALDK	1	Unmodified	1715.8407	0.8406524	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	102.36	102.24	2;3	1.5843E-06	84856	160511_QHF_FH_JSI10i_3	150.21	108.67			1.0387	1.0199	28.078	4	2	Median	1.2305	0.99702	NaN	1	1	Median	0.79333	0.93526	15.47	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5226	1.6215	NaN	1	0	Median	109890000	48305000	61582000	25746000	10646000	15099000	65255000	28347000	36909000	0	0	0	18886000	9311400	9574400	25767	2755	24407	161220;161221;161222;161223	218266;218267;218268	218266			3	
IQFHNVKPEYLDAYNSLTEAVLPK	2	Unmodified	2788.4436	0.44358112	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.276		2	22							9	7	5	3	95.904	95.468	3;4	1.0088E-43	83602	160511_QHF_FH_JSI11i_3	197.33	190.9			0.94484	0.90457	29.669	22	9	Median	1.1978	0.97264	21.388	9	5	Median	0.77089	0.87519	29.162	7	3	Median	1.0392	0.98808	33.958	4	1	Linear	0.81047	0.80925	6.2492	2	0	Median	1777200000	939540000	837620000	192880000	79187000	113690000	406640000	229280000	177360000	725300000	361310000	363990000	452340000	269770000	182580000	25768	4336	24408	161224;161225;161226;161227;161228;161229;161230;161231;161232;161233;161234;161235;161236;161237;161238;161239;161240;161241;161242;161243;161244;161245;161246;161247	218269;218270;218271;218272;218273;218274;218275;218276;218277;218278;218279;218280;218281;218282;218283;218284;218285;218286;218287;218288;218289;218290;218291;218292;218293;218294;218295;218296;218297;218298;218299;218300;218301;218302;218303;218304;218305;218306	218271			37	
IQFKPDDGISPER	1	Unmodified	1500.7573	0.75725712	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	4	2	1	43.502	42.632	2;3	0.00087906	36363	160511_QHF_FH_JSI12i_3	85.958	72.605			0.934	0.9662	19.755	9	1	Median	1.0666	0.92444	6.2485	2	0	Median	0.85808	1.0147	31.248	4	1	Median	0.98998	0.9521	9.949	2	0	Median	0.86522	0.89676	NaN	1	0	Median	628700000	322340000	306360000	154980000	72791000	82191000	346780000	188460000	158320000	102280000	48729000	53550000	24659000	12359000	12299000	25769	4118	24409	161248;161249;161250;161251;161252;161253;161254;161255;161256	218307;218308;218309;218310;218311;218312;218313;218314	218314			8	
IQFKPDDGTTPER	1	Unmodified	1502.7365	0.73652168	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.683	3	10	8							5	5	6	5	31.146	30.405	2;3	1.862E-09	26463	160511_QHF_FH_JSI11i_3	171.62	147.59			0.84001	0.83686	14.709	21	4	Median	1.0392	0.88394	11.739	5	2	Median	0.70996	0.82829	7.5103	5	0	Median	0.8383	0.81519	10.051	6	2	Median	0.84632	0.87245	26.445	5	0	Median	7086500000	3667600000	3418900000	1757000000	823650000	933340000	1739300000	907370000	831950000	2407400000	1258100000	1149300000	1182800000	678480000	504280000	25770	3966	24410	161257;161258;161259;161260;161261;161262;161263;161264;161265;161266;161267;161268;161269;161270;161271;161272;161273;161274;161275;161276;161277	218315;218316;218317;218318;218319;218320;218321;218322;218323;218324;218325;218326;218327;218328;218329;218330;218331;218332;218333;218334;218335;218336;218337;218338;218339;218340;218341;218342;218343;218344;218345;218346;218347	218321			33	
IQFKPDDGTTPER	1	Acetyl (K)	1544.7471	0.74708636	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13.5	0.5						1	1					1	1	54.931	44.849	2	0.015134	25126	160513_QHF_FH_JSI12Kac_4	61.353	36.136			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2079700	2079700	0	0	0	0	0	0	0	1071300	1071300	0	1008400	1008400	0	25771	3966	24410	161278;161279	218348;218349	218349	3015		2	
IQFNAHIWTK	1	Unmodified	1256.6666	0.66659162	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	8.2	6.37			3						2	2	1	1	1	61.224	57.494	3	0.00011493	47334	160511_QHF_FH_JSI9i_3	65.395	52.387			1.0273	1.0021	25.281	5	1	Median	1.2148	1.0116	27.576	2	1	Median	0.89436	1.0509	NaN	1	0	Median	1.0495	1.0021	NaN	1	0	Median	0.65789	0.63548	NaN	1	0	Median	293670000	143800000	149860000	113890000	52486000	61406000	70576000	37983000	32593000	64837000	32828000	32009000	44362000	20508000	23854000	25772	4248	24411	161280;161281;161282;161283;161284	218350;218351;218352	218350			3	
IQFNDLQSLLCATLQNVLRK	1	Unmodified	2373.2838	0.28384978	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	99.726	91.533	3	2.113E-13	55008	160513_QHF_FH_JSI10Kac_6	122.94	91.52			0.9627	1.0136	9.0584	3	1	Median	NaN	NaN	NaN	0	0	Median	0.83175	0.99452	NaN	1	0	Median	1.2052	1.1735	NaN	1	0	Median	0.9627	1.0136	NaN	1	1	Median	757350000	366020000	391330000	0	0	0	586680000	287290000	299380000	96934000	35166000	61768000	73738000	43559000	30180000	25773	2585	24412	161285;161286;161287	218353;218354;218355;218356	218355			4	
IQFTSLYHK	1	Unmodified	1135.6026	0.60259438	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	2	3	3	2	51.324	47.698	2;3	8.4351E-06	39740	160511_QHF_FH_JSI10i_3	99.815	90.601			0.88854	0.95515	33.205	9	2	Median	0.97823	0.81793	44.416	2	0	Median	0.88854	1.0599	19.201	3	0	Median	0.85581	0.8126	22.857	2	1	Median	0.65563	0.66646	57.861	2	1	Median	1317100000	600250000	716840000	239890000	99146000	140740000	247680000	115350000	132330000	266990000	84412000	182580000	562520000	301340000	261180000	25774	2134	24413	161288;161289;161290;161291;161292;161293;161294;161295;161296;161297	218357;218358;218359;218360;218361;218362;218363;218364;218365;218366;218367;218368;218369	218358			13	
IQGDDWEPRPLR	0	Unmodified	1480.7423	0.74227576	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			46.937	45.359	2;3	0.0018605	37124	160511_QHF_FH_JSI9i_3	45.257	37.533			1.0556	1.1988	6.2705	3	0	Median	1.6009	1.3217	NaN	1	0	Median	1.0378	1.1873	1.368	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193220000	87059000	106160000	69869000	26128000	43742000	123350000	60931000	62421000	0	0	0	0	0	0	25775	732	24414	161298;161299;161300	218370;218371;218372;218373	218373			4	
IQGEYKYTQVGPDHNR	1	Acetyl (K)	1945.9282	0.92823863	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		44.893	34.879	3	6.9857E-05	19724	160513_QHF_FH_JSI11Kac_5	87.088	71.695			0.61245	0.66424	83.525	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0065	1.199	NaN	1	0	Median	0.37267	0.36798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35091000	25109000	9981800	0	0	0	3832600	1498300	2334300	31258000	23611000	7647500	0	0	0	25776	2265	24415	161301;161302;161303	218374;218375;218376;218377	218375	2363		4	
IQGGYENVPTIDIHMNQIGFER	0	Unmodified	2530.2275	0.22745711	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	3	2	84.604	84.077	3	8.0904E-06	75058	160511_QHF_FH_JSI11i_3	61.222	53.524			1.3115	1.321	6.9511	8	6	Median	1.428	1.2673	NaN	1	1	Median	0.97062	1.1812	1.1099	2	2	Median	1.5097	1.3933	2.5013	3	2	Plateau	1.2602	1.3526	4.4696	2	1	Median	721850000	326670000	395180000	48394000	18473000	29921000	169670000	89376000	80292000	284760000	121470000	163290000	219020000	97346000	121680000	25777	2194	24416	161304;161305;161306;161307;161308;161309;161310;161311	218378;218379;218380;218381;218382;218383;218384;218385;218386;218387;218388	218380			11	
IQGLTVEQAEAVVR	0	Unmodified	1511.8308	0.83075641	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								2	4	4	3	66.392	65.664	2	3.541E-06	59559	160511_QHF_FH_JSI10i_1	121.02	89.599			0.85467	0.88157	8.0991	12	11	Median	1.0175	0.85641	0.42577	2	2	Median	0.84284	1.0058	5.4855	4	4	Median	0.87773	0.87595	4.8294	3	3	Median	0.82991	0.83759	5.3938	3	2	Plateau	1836800000	985730000	851050000	245480000	110310000	135180000	651470000	340050000	311420000	526560000	315970000	210600000	413270000	219400000	193870000	25778	2517	24417	161312;161313;161314;161315;161316;161317;161318;161319;161320;161321;161322;161323;161324	218389;218390;218391;218392;218393;218394;218395;218396;218397;218398;218399;218400;218401;218402	218396			14	
IQHADVPSFATAPFFYMPQQVAYTLLWPLR	0	Unmodified	3506.7849	0.7849392	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.7	91.277	3	7.2599E-39	52413	160513_QHF_FH_JSI11Kac_6	139.72	130.73			1.2844	1.2304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2844	1.2304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	293370000	138740000	154630000	0	0	0	0	0	0	293370000	138740000	154630000	0	0	0	25779	2509	24418	161325	218403	218403			1	
IQHAVQLATEPLEK	1	Unmodified	1575.8621	0.86205654	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							3	3	5	3	44.439	43.886	2;3	7.754E-07	38424	160511_QHF_FH_JSI11i_3	122.97	103.75			1.1288	0.9818	55.31	13	11	Median	1.1288	0.97786	30.479	3	2	Median	0.80946	0.9818	36.408	3	2	Median	3.8283	3.4562	80.798	4	4	Linear	1.2331	1.2301	78.634	3	3	Median	1713300000	727130000	986180000	113080000	47192000	65889000	269350000	132550000	136800000	630750000	237420000	393330000	700120000	309960000	390150000	25780	1665	24419	161326;161327;161328;161329;161330;161331;161332;161333;161334;161335;161336;161337;161338;161339	218404;218405;218406;218407;218408;218409;218410;218411;218412;218413;218414;218415;218416;218417;218418;218419;218420;218421	218405			18	
IQHEELNNR	0	Unmodified	1151.5683	0.56833414	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.6313	7.729	2	0.023898	5201	160511_QHF_FH_JSI12i_3	49.418	28.863			1.4821	1.5498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4821	1.5498	NaN	1	1	Median	37963000	13164000	24799000	0	0	0	0	0	0	0	0	0	37963000	13164000	24799000	25781	2627	24420	161340	218422	218422			1	
IQHILCTGNLCTK	1	Unmodified	1556.7803	0.78031752	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	2	2	2	3	40.259	38.473	2;3	1.4617E-05	32158	160511_QHF_FH_JSI10i_3	106.58	95.307			1.015	1.0427	34.562	9	3	Median	1.2933	1.0511	17.924	2	1	Median	0.9542	1.113	9.2224	2	0	Median	0.82245	0.76721	15.634	2	0	Median	1.8857	1.9323	56.246	3	2	Plateau	1261000000	635320000	625730000	171910000	81237000	90670000	285770000	177830000	107930000	355380000	179610000	175770000	448000000	196640000	251360000	25782	5246	24421	161341;161342;161343;161344;161345;161346;161347;161348;161349	218423;218424;218425;218426;218427;218428;218429;218430;218431;218432;218433;218434;218435	218428			13	
IQHMELQLIK	1	Unmodified	1251.7009	0.70092821	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	54.243	53.13	3	9.734E-06	45650	160511_QHF_FH_JSI12i_2	94.616	78.726			0.77502	1.3375	36.22	3	2	Plateau	0.77502	0.64826	NaN	1	1	Median	0.76434	0.94302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1627	1.3375	NaN	1	0	Median	230790000	135760000	95029000	64248000	37668000	26580000	100370000	58312000	42058000	0	0	0	66169000	39778000	26390000	25783	525	24422	161350;161351;161352	218436;218437;218438	218436			3	
IQHSITAQDHQPTPDSCIISMVVGQLK	1	Unmodified	3002.4954	0.49537547	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	93.173	92.653	3;4	2.9344E-10	79239	160511_QHF_FH_JSI12i_3	78.717	75.73			1.0995	1.0971	32.769	9	4	Median	1.0863	0.9096	36.835	3	2	Median	1.1018	1.3283	3.3329	3	1	Median	0.80186	0.74012	17.686	2	1	Median	1.1606	1.1729	NaN	1	0	Median	431500000	229190000	202310000	39466000	18560000	20905000	82185000	47653000	34531000	224020000	121000000	103020000	85831000	41974000	43857000	25784	1974	24423	161353;161354;161355;161356;161357;161358;161359;161360;161361	218439;218440;218441;218442;218443;218444;218445;218446;218447;218448;218449;218450;218451	218451			13	
IQHYAGK	1	Unmodified	815.42899	0.42898711	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	5.3075	5.3553	2	0.049359	2906	160511_QHF_FH_JSI12i_3	43	9.4497			1.784	1.6996	32.942	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4911	1.3465	NaN	1	0	Median	2.1344	2.1455	NaN	1	0	Median	161050000	54199000	106850000	0	0	0	0	0	0	39840000	13937000	25903000	121210000	40262000	80944000	25785	376	24424	161362;161363	218452	218452			1	
IQIADLMEEK	1	Unmodified	1188.606	0.60602477	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		70.294	69.982	2	0.0056606	63652	160511_QHF_FH_JSI11i_1	63.283	32.21			0.94285	0.99969	13.972	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94273	1.1035	NaN	1	1	Median	0.94298	0.90565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82775000	44270000	38505000	0	0	0	42419000	21724000	20694000	40356000	22546000	17810000	0	0	0	25786	2752	24425	161364;161365	218453;218454	218453			2	
IQIAPDSGGLPER	0	Unmodified	1351.7096	0.70957864	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.76	4	5					4			3	5	3	2	53.596	49.422	2	2.9659E-05	43682	160511_QHF_FH_JSI10i_2	118.4	78.402			0.91892	0.93138	10.753	12	8	Median	1.1094	0.9499	12.464	3	2	Median	0.71796	0.86919	8.4993	4	3	Median	0.94332	0.9179	6.6919	3	2	Median	0.98044	1.0608	12.548	2	1	Median	2908000000	1588200000	1319800000	999620000	474920000	524700000	751570000	465940000	285620000	912270000	516790000	395490000	244500000	130540000	113960000	25787	3966	24426	161366;161367;161368;161369;161370;161371;161372;161373;161374;161375;161376;161377;161378	218455;218456;218457;218458;218459;218460;218461;218462;218463;218464;218465;218466;218467;218468;218469;218470	218470			16	
IQIASESSGIPERPCVLTGTPESIEQAK	1	Unmodified	2996.5125	0.51246533	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		72.304	71.58	3	3.4085E-10	64037	160511_QHF_FH_JSI11i_3	77.641	58.092			0.98429	1.015	26.791	2	0	Median	NaN	NaN	NaN	0	0	Median	1.041	1.2267	NaN	1	0	Median	0.93069	0.83985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67837000	37938000	29900000	0	0	0	19328000	9647200	9680400	48510000	28290000	20219000	0	0	0	25788	4118	24427	161379;161380	218471;218472;218473;218474	218473			4	
IQIEAIPLALQGR	0	Unmodified	1420.8402	0.84019889	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							1	2	3	4	87.651	87.173	2;3	0.00015749	75358	160511_QHF_FH_JSI12i_2	64.65	44.188			0.9531	0.96797	24.01	8	1	Median	1.0706	0.91254	NaN	1	0	Median	0.69998	0.85225	20.109	2	1	Median	0.96618	0.9537	10.135	3	0	Median	1.2408	1.3154	36.563	2	0	Median	329590000	157390000	172200000	49369000	23404000	25965000	72948000	37772000	35176000	91259000	45190000	46069000	116010000	51023000	64991000	25789	4640	24428	161381;161382;161383;161384;161385;161386;161387;161388;161389;161390	218475;218476;218477;218478;218479;218480;218481;218482;218483;218484	218477			9	
IQILEGWK	1	Unmodified	985.55967	0.55966693	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	67.287	66.639	2	0.0017591	57553	160511_QHF_FH_JSI12i_3	85.212	85.212			0.96848	1.0062	13.906	6	0	Median	1.3284	1.1334	NaN	1	0	Median	0.83707	1.0222	NaN	1	0	Median	0.96848	0.95822	4.6735	2	0	Median	0.98579	1.0427	27.337	2	0	Median	1297900000	632940000	664990000	155880000	64682000	91197000	267210000	148980000	118230000	430630000	207530000	223100000	444210000	211750000	232460000	25790	1080	24429	161391;161392;161393;161394;161395;161396	218485;218486;218487;218488;218489;218490;218491;218492;218493;218494;218495;218496	218495			12	
IQILEGWKK	2	Unmodified	1113.6546	0.65462995	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	3	4	3	3	56.034	53.638	2;3	3.2749E-05	46999	160511_QHF_FH_JSI11i_3	101.43	101.43			0.86581	0.89941	35.88	12	2	Median	0.68777	0.54591	83.076	2	1	Median	0.76376	0.87431	27.594	4	1	Median	0.98492	0.93033	28.486	3	0	Plateau	0.85923	0.89683	1.9267	3	0	Median	6408400000	3762800000	2645600000	1393000000	601700000	791280000	1372800000	885290000	487500000	1496900000	878450000	618440000	2145700000	1397300000	748370000	25791	1080	24430	161397;161398;161399;161400;161401;161402;161403;161404;161405;161406;161407;161408;161409	218497;218498;218499;218500;218501;218502;218503;218504;218505;218506;218507;218508;218509;218510;218511;218512;218513;218514;218515;218516;218517;218518;218519	218497			23	
IQIMHAFSVAPFDQNLSIDGK	1	Unmodified	2330.1729	0.17290235	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	96.817	96.833	3	5.1499E-13	83905	160511_QHF_FH_JSI12i_3	114.72	102.59			1.3894	1.38	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3894	1.38	NaN	1	0	Median	76490000	23470000	53021000	0	0	0	0	0	0	0	0	0	76490000	23470000	53021000	25792	3331	24431	161410	218520;218521	218521			2	
IQIPRPDDPSNQIK	1	Unmodified	1619.8631	0.86311917	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	49.015	48.919	2;3	0.0041822	43233	160511_QHF_FH_JSI11i_3	55.656	25.597			1.1155	1.0871	7.9279	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1517	1.118	6.0082	3	2	Median	1.0104	1.0206	5.6471	2	2	Median	1944000000	1081100000	862900000	0	0	0	0	0	0	1116800000	620090000	496690000	827190000	460990000	366200000	25793	2147	24432	161411;161412;161413;161414;161415	218522;218523;218524;218525;218526;218527	218523			6	
IQKHQEHILR	1	Acetyl (K)	1342.747	0.7469672	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									5		2	3		26.376	17.636	3;4	0.0013817	10539	160513_QHF_FH_JSI11Kac_6	59.198	34.944			0.21988	0.21615	2.2979	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21988	0.21615	2.2979	2	0	Median	NaN	NaN	NaN	0	0	Median	54863000	43705000	11158000	0	0	0	4127000	0	4127000	50736000	43705000	7030900	0	0	0	25794	2380	24433	161416;161417;161418;161419;161420	218528;218529;218530;218531;218532	218529	2448		5	
IQKHVTFNQVK	2	Acetyl (K)	1382.767	0.76703394	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	44.314	34.719	2;3	0.00025616	18921	160513_QHF_FH_JSI11Kac_6	81.92	68.912			0.31125	0.32026	23.486	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27738	0.27125	NaN	1	0	Median	0.34926	0.37811	NaN	1	0	Median	51767000	38843000	12924000	0	0	0	0	0	0	43228000	32396000	10832000	8539400	6447400	2092000	25795	1226	24434	161421;161422;161423	218533;218534;218535	218533	1108		3	
IQKLLQDFFNGK	2	Unmodified	1449.798	0.79799972	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	1		By MS/MS			3	0			1								1			74.736	73.297	3	0.037078	61395	160511_QHF_FH_JSI10i_3	34.685	14.222			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11523000	11523000	0	0	0	0	11523000	11523000	0	0	0	0	0	0	0	25796	985;1827	24435	161424	218536	218536			1	
IQKLLQDFFNGK	2	Acetyl (K)	1491.8086	0.80856441	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	1	0	0	1			By MS/MS	By MS/MS	16	0									4			2	2	87.13	77.747	2	2.8724E-14	43266	160513_QHF_FH_JSI11Kac_6	173.71	93.735			5.3217	5.2034	60.022	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.6735	7.9544	NaN	1	1	Median	3.2651	3.4038	NaN	1	1	Median	242730000	158670000	84063000	0	0	0	0	0	0	174250000	120900000	53354000	68479000	37770000	30709000	25797	985;1827	24435	161425;161426;161427;161428	218537;218538;218539;218540	218538	780		4	
IQKPNEVSSPPTTSAVIPPAVPQAQHLVAQPR	1	Unmodified	3356.8205	0.82047308	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				68.99	67.502	4	0.053169	55363	160511_QHF_FH_JSI9i_3	9.9351	8.0054			1.0709	0.8851	NaN	1	0	Median	1.0709	0.8851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28394000	14766000	13628000	28394000	14766000	13628000	0	0	0	0	0	0	0	0	0	25798	3306	24436	161429	218541	218541			1	
IQLEQVQEWK	1	Unmodified	1299.6823	0.68230126	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	1	3	60.317	59.383	2	4.9343E-05	51381	160511_QHF_FH_JSI11i_2	93.096	51.647			1.0324	1.1613	18.032	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0324	1.2436	NaN	1	0	Median	1.0278	1.0191	NaN	1	0	Median	0.83016	0.98122	23.216	3	3	Plateau	306000000	168360000	137640000	0	0	0	75142000	44468000	30674000	87474000	46532000	40942000	143380000	77361000	66024000	25799	2516	24437	161430;161431;161432;161433;161434;161435	218542;218543;218544;218545;218546;218547;218548	218546			7	
IQLHSDLPWWLILIR	0	Unmodified	1902.088	0.087974152	5519	Q9Y2H2	INPP5F	Phosphatidylinositide phosphatase SAC2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.816	91.096	3	1.4024E-07	52857	160513_QHF_FH_JSI10Kac_6	112.5	101.13			0.85589	1.0235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85589	1.0235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155350000	90214000	65138000	0	0	0	155350000	90214000	65138000	0	0	0	0	0	0	25800	5519	24438	161436	218549	218549			1	
IQLIFER	0	Unmodified	917.53345	0.53345218	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								2	1	1	62.503	61.842	2	0.029842	54983	160511_QHF_FH_JSI11i_3	56.122	6.5319			1.1301	1.212	14.562	4	1	Median	NaN	NaN	NaN	0	0	Median	0.96532	1.1616	23.936	2	1	Median	1.3362	1.271	NaN	1	0	Median	1.1713	1.1557	NaN	1	0	Median	368530000	170300000	198230000	0	0	0	113440000	54931000	58505000	128680000	61807000	66871000	126420000	53565000	72850000	25801	2604	24439	161437;161438;161439;161440	218550;218551	218550			2	
IQLIHDEKR	1	Unmodified	1150.6459	0.64585618	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	62.625	61.844	2	0.0077744	53300	160511_QHF_FH_JSI12i_2	53.17	24.009			0.96689	1.0787	9.3397	5	0	Median	1.2674	1.0787	NaN	1	0	Median	0.95959	1.1741	NaN	1	0	Median	0.9967	1.0172	NaN	1	0	Median	0.9459	0.9959	12.276	2	0	Median	652740000	320740000	332000000	84993000	34204000	50788000	128800000	63495000	65303000	163510000	82767000	80748000	275430000	140270000	135170000	25802	3405	24440	161441;161442;161443;161444;161445	218552;218553;218554	218552			3	
IQLIHDEKR	1	Acetyl (K)	1192.6564	0.65642086	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.866	30.322	3	0.041972	16754	160513_QHF_FH_JSI11Kac_6	36.684	25.854			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25803	3405	24440	161446	218555	218555			1	
IQLINNMLDK	1	Oxidation (M)	1216.6486	0.64855829	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	4.9	3	4	4					1	1	3	3	3	4	52.113	50.556	2	1.1137E-05	43356	160511_QHF_FH_JSI12i_3	107.15	77.681			0.99884	1.0327	12.3	12	1	Median	1.2821	1.0477	10.594	2	0	Median	0.99604	1.0908	8.9051	3	0	Plateau	1.0612	1.0221	1.6094	3	0	Median	1.1111	1.1518	18.645	4	1	Linear	5587000000	2683300000	2903700000	599670000	273360000	326320000	1197800000	660700000	537100000	1493500000	687700000	805750000	2296000000	1061500000	1234500000	25804	775	24441	161447;161448;161449;161450;161451;161452;161453;161454;161455;161456;161457;161458;161459	218556;218557;218558;218559;218560;218561;218562;218563;218564;218565;218566;218567;218568;218569;218570;218571;218572;218573;218574;218575;218576	218575		285	21	
IQLINNMLDK	1	Unmodified	1200.6536	0.65364367	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.63	4	4	4				2	5	4	5	7	5	6	72.288	67.215	2	2.0646E-10	59935	160511_QHF_FH_JSI9i_2	140.75	105.46			1.0528	1.0314	33.689	23	7	Median	1.1395	0.96452	48.1	5	2	Median	0.91707	1.0949	44.775	7	3	Median	1.0672	1.0358	6.4945	5	1	Median	0.89864	0.95449	17.581	6	1	Median	37785000000	18448000000	19337000000	4647400000	2201700000	2445700000	8148000000	4057600000	4090400000	12658000000	6178700000	6478900000	12333000000	6010300000	6322200000	25805	775	24441	161460;161461;161462;161463;161464;161465;161466;161467;161468;161469;161470;161471;161472;161473;161474;161475;161476;161477;161478;161479;161480;161481;161482	218577;218578;218579;218580;218581;218582;218583;218584;218585;218586;218587;218588;218589;218590;218591;218592;218593;218594;218595;218596;218597;218598;218599;218600;218601;218602;218603;218604;218605;218606;218607;218608;218609;218610;218611;218612;218613;218614;218615;218616;218617;218618;218619;218620	218601			44	
IQLKPEQFSSYLTSPDVGFSSYELVATPHNTSK	2	Unmodified	3669.8203	0.82025789	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	99.689	99.609	4	7.7114E-11	88405	160511_QHF_FH_JSI11i_3	66.083	64.135			0.72356	0.77148	38.101	4	4	Median	NaN	NaN	NaN	0	0	Median	0.81294	0.92718	6.8926	2	2	Median	0.44336	0.41579	NaN	1	1	Median	0.67501	0.67398	NaN	1	1	Median	224600000	108610000	115990000	0	0	0	76610000	44462000	32148000	119900000	55479000	64422000	28094000	8670900	19423000	25806	3223	24442	161483;161484;161485;161486	218621;218622;218623;218624	218621			4	
IQLLDLPGIIEGAK	1	Unmodified	1478.8708	0.87083031	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	101.64	101.56	2	1.1075E-09	90104	160511_QHF_FH_JSI10i_2	145.09	107.74			1.2703	1.1925	21.276	5	0	Median	1.4238	1.1925	NaN	1	0	Median	0.89787	1.0818	NaN	1	0	Median	1.2703	1.291	NaN	1	0	Median	1.3396	1.4521	34.05	2	0	Median	1020500000	486060000	534450000	231150000	114620000	116530000	232160000	110280000	121880000	181180000	83233000	97946000	376030000	177930000	198100000	25807	5505	24443	161487;161488;161489;161490;161491	218625;218626;218627	218627			3	
IQLLVFK	1	Unmodified	859.55312	0.55312499	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	5	4	4	78.271	72.859	2	0.010327	66996	160511_QHF_FH_JSI11i_3	75.311	40.205			1.0144	1.0122	14.511	17	0	Median	1.1757	0.99655	3.6202	4	0	Median	0.91485	1.0935	11.943	5	0	Median	0.95757	0.96454	14.482	4	0	Median	0.9763	1.0537	23.175	4	0	Median	3832100000	1874800000	1957300000	861560000	383560000	478000000	1032000000	507950000	524080000	1218100000	624600000	593530000	720350000	358680000	361670000	25808	5494	24444	161492;161493;161494;161495;161496;161497;161498;161499;161500;161501;161502;161503;161504;161505;161506;161507;161508	218628;218629;218630;218631;218632;218633;218634;218635;218636;218637;218638;218639;218640;218641;218642;218643;218644;218645;218646;218647;218648;218649;218650;218651;218652;218653;218654;218655	218630			28	
IQLLVFKHK	2	Acetyl (K)	1166.7176	0.71756456	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	73.929	65.175	3	6.9522E-05	35409	160513_QHF_FH_JSI11Kac_6	101.65	90.482			0.60082	0.64806	106.45	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1529	1.3756	NaN	1	0	Median	0.31311	0.3053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128590000	87909000	40678000	0	0	0	28135000	8873900	19261000	87068000	65651000	21417000	13384000	13384000	0	25809	5494	24445	161509;161510;161511	218656;218657	218656	3452		2	
IQLQDAGR	0	Unmodified	899.48248	0.48247924	4796	Q9H936;Q9H1K4	SLC25A22;SLC25A18	Mitochondrial glutamate carrier 1;Mitochondrial glutamate carrier 2	yes	no	0	0	0	0				By MS/MS	2	0		1											1	21.523	20.348	2	0.016542	16806	160511_QHF_FH_JSI12i_2	47.849	6.3464			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25810	4796	24446	161512	218658	218658			1	
IQLQIQETLQR	0	Unmodified	1368.7725	0.77251325	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	61.789	61.178	2	0.0003363	52622	160511_QHF_FH_JSI12i_3	85.377	52.115			1.2787	1.245	16.737	5	0	Median	1.4454	1.245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.162	1.1311	18.428	2	0	Median	0.99633	1.0533	24.325	2	0	Median	328160000	150580000	177580000	55955000	25342000	30613000	0	0	0	107870000	50735000	57139000	164330000	74508000	89825000	25811	558	24447	161513;161514;161515;161516;161517	218659;218660;218661;218662;218663	218663			5	
IQLSSLIAAFQVTR	0	Unmodified	1545.8879	0.88787736	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	95.471	86.695	2;3	1.0429E-11	48892	160513_QHF_FH_JSI9Kac_6	126.48	111.1			1.3191	1.2411	18.483	7	1	Median	1.6564	1.4427	34.134	2	1	Median	0.90213	1.0791	NaN	1	0	Median	1.3547	1.2826	4.6511	2	0	Median	1.2149	1.2904	17.175	2	0	Median	1212600000	563360000	649200000	327000000	126530000	200470000	533890000	282680000	251210000	203350000	89359000	114000000	148320000	64790000	83525000	25812	1505	24448	161518;161519;161520;161521;161522;161523;161524	218664;218665;218666;218667;218668;218669;218670	218666			7	
IQLVAVNYIPEVR	0	Unmodified	1512.8664	0.86641364	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	89.072	88.479	2	0.00010642	78674	160511_QHF_FH_JSI10i_2	91.937	32.18			0.91234	0.98639	7.123	5	3	Median	1.2133	1.0562	NaN	1	0	Median	0.78516	0.96493	NaN	1	0	Median	0.88945	0.92589	8.9515	2	2	Median	0.91234	0.99634	NaN	1	1	Median	156090000	76832000	79253000	24363000	9627000	14736000	27394000	16546000	10847000	77150000	38465000	38685000	27179000	12193000	14985000	25813	5348	24449	161525;161526;161527;161528;161529	218671;218672;218673;218674;218675;218676;218677	218677			7	
IQLVEEELDR	0	Unmodified	1242.6456	0.6455814	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	2	3	55.734	54.863	2	2.1667E-07	47439	160511_QHF_FH_JSI11i_2	116.3	60.294		+	0.97682	0.98014	39.036	10	5	Median	1.0482	0.85886	31.847	2	1	Median	0.56717	0.67192	48.634	3	2	Median	0.97682	0.98014	0.37344	2	0	Median	1.2275	1.3637	48.506	3	2	Median	4487200000	2409200000	2077900000	829150000	400940000	428210000	1279200000	779370000	499870000	1369000000	733030000	635940000	1009800000	495900000	513900000	25814	858;73;886;929;2069	24450	161530;161531;161532;161533;161534;161535;161536;161537;161538;161539	218678;218679;218680;218681;218682;218683;218684;218685;218686;218687	218685			10	
IQLVEEELDRAQER	0	Unmodified	1726.885	0.88497683	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.26	4.51	1	12	10					4		5	6	9	7	56.135	53.981	2;3	7.183E-16	47819	160511_QHF_FH_JSI11i_3	208.95	166.23		+	0.59133	0.6662	123.39	27	22	Median	0.81019	0.66898	84.303	5	4	Median	0.34669	0.41989	162.2	6	4	Median	1.0098	1.0005	124.37	9	8	Median	1.538	1.5859	109.9	7	6	Median	20858000000	10445000000	10413000000	2795900000	1249400000	1546500000	4664000000	2895400000	1768600000	10166000000	4581900000	5584300000	3232000000	1718100000	1513900000	25815	858;73;886;929;2069	24451	161540;161541;161542;161543;161544;161545;161546;161547;161548;161549;161550;161551;161552;161553;161554;161555;161556;161557;161558;161559;161560;161561;161562;161563;161564;161565;161566	218688;218689;218690;218691;218692;218693;218694;218695;218696;218697;218698;218699;218700;218701;218702;218703;218704;218705;218706;218707;218708;218709;218710;218711;218712;218713;218714;218715;218716;218717;218718;218719;218720;218721;218722;218723;218724;218725	218690			38	
IQMLDDTQEAFEVPQRAPGK	1	Unmodified	2272.1158	0.1157814	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		2	1	68.407	67.711	3	0.00030695	59952	160511_QHF_FH_JSI11i_3	59.469	44.048			1.2408	1.3108	23.971	4	1	Median	0.9344	0.8211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3671	1.3426	0.83128	2	1	Median	1.1662	1.2872	NaN	1	0	Median	227860000	101870000	125990000	31243000	9771700	21471000	0	0	0	133200000	58992000	74206000	63423000	33107000	30315000	25816	5627	24452	161567;161568;161569;161570	218726;218727	218726			2	
IQMSNLMNQAR	0	Unmodified	1304.6329	0.632925	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				51.128	50.078	2	0.056552	43818	160511_QHF_FH_JSI9i_2	34.387	15.604			1.1971	1.0363	NaN	1	0	Median	1.1971	1.0363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58411000	22012000	36399000	58411000	22012000	36399000	0	0	0	0	0	0	0	0	0	25817	1455	24453	161571	218728	218728			1	
IQNDAGVR	0	Unmodified	871.45118	0.45117911	3966;3911;4118	Q96AE4;Q92945;Q96I24	FUBP1;KHSRP;FUBP3	Far upstream element-binding protein 1;Far upstream element-binding protein 2;Far upstream element-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91	4	4				2	3			2	3	4	4	8.7624	5.4763	2	0.0032923	3978	160513_QHF_FH_JSI11Kac_4	86.833	40.462			0.96061	1.0273	11.744	13	0	Median	1.1614	0.95035	2.8708	2	0	Median	0.8298	0.96706	4.8707	3	0	Median	0.90761	0.89974	16.901	4	0	Linear	0.95525	1.0384	10.712	4	0	Median	6544300000	3539400000	3004900000	1240900000	605210000	635670000	1865400000	1118000000	747350000	1786300000	906180000	880100000	1651700000	909920000	741830000	25818	3966;3911;4118	24454	161572;161573;161574;161575;161576;161577;161578;161579;161580;161581;161582;161583;161584	218729;218730;218731;218732;218733;218734;218735;218736;218737;218738;218739;218740;218741;218742;218743;218744;218745	218738			17	
IQNFVLEWDEGK	1	Unmodified	1476.7249	0.72489436	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.642	79.49	2	0.00033458	68793	160511_QHF_FH_JSI12i_2	72.006	46.62			1.2574	1.3306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2574	1.3306	NaN	1	0	Median	23877000	6955000	16922000	0	0	0	0	0	0	0	0	0	23877000	6955000	16922000	25819	5520	24455	161585	218746;218747	218746			2	
IQNGAQGIR	0	Unmodified	955.51993	0.51992738	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	10.702	10.229	2	0.0037461	8122	160511_QHF_FH_JSI10i_2	58.981	9.6227			1.0459	1.0067	9.1271	7	0	Median	1.1618	0.96024	2.4622	2	0	Median	0.82493	1.0083	10.733	2	0	Median	1.0459	1.0067	NaN	1	0	Median	1.0401	1.1369	8.4197	2	0	Median	3480300000	1775700000	1704600000	859020000	396120000	462900000	1189200000	639770000	549470000	502430000	253450000	248980000	929630000	486370000	443260000	25820	1383	24456	161586;161587;161588;161589;161590;161591;161592	218748;218749;218750;218751;218752;218753;218754;218755	218755			8	
IQNGTSGIR	0	Unmodified	944.50394	0.50394296	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	9.9244	9.598	2	0.0076494	7176	160511_QHF_FH_JSI12i_2	53.166	9.9201			0.93105	0.92327	53.434	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59531	0.58722	63.996	2	1	Median	0.87526	0.9606	NaN	1	0	Median	644250000	416040000	228220000	0	0	0	0	0	0	462490000	312280000	150220000	181760000	103760000	78003000	25821	1864	24457	161593;161594;161595	218756;218757;218758;218759	218758			4	
IQNIGEQGHMALLGHSLGAYISTLDK	1	Unmodified	2765.417	0.4170488	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		93.496	92.916	3;4	1.0285E-25	81631	160511_QHF_FH_JSI11i_3	133.15	113.25			0.87151	0.8311	15.08	5	2	Median	0.89729	0.74492	19.353	2	1	Median	0.6279	0.71913	NaN	1	1	Median	0.93876	0.89015	9.7073	2	0	Median	NaN	NaN	NaN	0	0	Median	330390000	167260000	163130000	33892000	18829000	15063000	47439000	23043000	24396000	249060000	125390000	123670000	0	0	0	25822	3111	24458	161596;161597;161598;161599;161600	218760;218761;218762;218763;218764;218765;218766;218767;218768	218762			9	
IQNLEALLQK	1	Unmodified	1168.6816	0.68157298	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.02	69.727	2	0.011203	60139	160511_QHF_FH_JSI12i_2	56.563	26.754			0.96146	1.0423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96146	1.0423	NaN	1	1	Median	32740000	18159000	14581000	0	0	0	0	0	0	0	0	0	32740000	18159000	14581000	25823	2627	24459	161601	218769	218769			1	
IQNNDNVGKPK	2	Unmodified	1225.6415	0.64149908	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							1	3	5	3	7.4995	7.2482	2;3	3.9769E-06	4689	160511_QHF_FH_JSI12i_3	96.103	70.666			0.88645	0.94849	49.982	11	5	Median	0.79515	0.67547	NaN	1	1	Median	1.4824	1.8124	73.404	2	1	Median	1.1006	1.0693	45.487	5	3	Median	0.74914	0.76892	19.595	3	0	Median	1533100000	850900000	682160000	247580000	176860000	70723000	229360000	103820000	125540000	670120000	340580000	329550000	385990000	229640000	156350000	25824	2263	24460	161602;161603;161604;161605;161606;161607;161608;161609;161610;161611;161612;161613	218770;218771;218772;218773;218774;218775;218776;218777;218778;218779	218778			10	
IQNSDDEERAQGSDEDK	1	Unmodified	1934.809	0.80897093	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	8.2823	7.933	3	0.00025324	5773	160511_QHF_FH_JSI12i_1	60.768	50.711			0.94075	0.92253	10.074	4	0	Median	1.1655	0.95305	NaN	1	0	Median	0.76881	0.89299	NaN	1	0	Median	0.86485	0.85066	NaN	1	0	Median	1.0233	1.0736	NaN	1	0	Median	287610000	158190000	129420000	47758000	23304000	24455000	69624000	37686000	31938000	91681000	55132000	36550000	78545000	42068000	36477000	25825	3778	24461	161614;161615;161616;161617	218780;218781;218782;218783	218781			4	
IQNSSGTDYPDIHAAAK	1	Unmodified	1786.8486	0.84859132	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	31.869	31.108	3	3.9829E-05	26383	160511_QHF_FH_JSI11i_2	62.94	56.503			0.99598	0.9886	42.634	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99598	0.9886	NaN	1	0	Median	1.5119	1.5905	46.128	2	1	Median	111860000	47391000	64465000	0	0	0	0	0	0	46512000	21334000	25178000	65344000	26057000	39287000	25826	1716	24462	161618;161619;161620	218784;218785	218785			2	
IQNTGDYYDLYGGEK	1	Unmodified	1734.7737	0.77369504	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.523	51.855	2	1.218E-06	46853	160511_QHF_FH_JSI11i_1	157.52	104.94			0.865	0.95982	10.322	4	1	Median	1.3094	1.0684	NaN	1	0	Median	0.84024	0.97772	NaN	1	0	Median	0.84873	0.83294	NaN	1	1	Median	0.88158	0.94225	NaN	1	0	Median	460880000	231050000	229830000	102290000	44140000	58149000	162120000	83457000	78664000	103900000	56041000	47857000	92571000	47416000	45155000	25827	2239	24463	161621;161622;161623;161624	218786;218787;218788;218789;218790;218791;218792;218793;218794	218786			9	
IQNWHEEHR	0	Unmodified	1247.5796	0.57956752	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		34.032	34.032	3	0.04914	29786	160511_QHF_FH_JSI11i_3	34.721	25.033			1.1043	0.99221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1043	0.99221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33909000	17637000	16272000	0	0	0	0	0	0	33909000	17637000	16272000	0	0	0	25828	1426	24464	161625	218795	218795			0	
IQPALQEK	1	Unmodified	925.52328	0.52328142	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	21.249	20.597	2	0.00093466	18078	160511_QHF_FH_JSI12i_1	96.253	59.232			0.96504	0.91579	45.334	5	1	Median	1.1259	0.91579	NaN	1	0	Median	0.96504	1.1475	NaN	1	0	Median	0.76026	0.74238	NaN	1	0	Median	1.3388	1.4215	70.759	2	1	Median	1550900000	777930000	772920000	388030000	194460000	193570000	261910000	125070000	136840000	387930000	188200000	199730000	512980000	270200000	242780000	25829	4274	24465	161626;161627;161628;161629;161630	218796;218797;218798;218799;218800;218801;218802	218798			7	
IQPALQEKHAMK	2	Acetyl (K)	1434.7653	0.76531938	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.5	0.5								2	2		2	2		41.238	31.675	3	0.0049284	17362	160513_QHF_FH_JSI11Kac_6	46.88	35.621			0.59193	0.63784	93.741	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2196	1.4532	6.0165	2	0	Median	0.29468	0.28692	2.5374	2	0	Median	NaN	NaN	NaN	0	0	Median	44611000	31262000	13349000	0	0	0	11296000	5446400	5849400	33315000	25815000	7499400	0	0	0	25830	4274	24466	161631;161632;161633;161634	218803;218804;218805	218803	3097		3	
IQPAPPEEYVPMVK	1	Unmodified	1596.8222	0.82216556	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	68.319	67.657	2	0.0085612	61600	160511_QHF_FH_JSI11i_1	50.284	34.394			1.0119	0.83615	28.946	3	0	Plateau	1.0119	0.83615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5413	1.4786	NaN	1	0	Median	0.9986	1.0188	NaN	1	0	Median	110220000	55839000	54380000	46258000	24281000	21977000	0	0	0	31262000	15345000	15917000	32698000	16212000	16486000	25831	2229	24467	161635;161636;161637	218806;218807;218808	218806			2	
IQPDTIIQVWREDIPVNYMK	1	Unmodified	2457.2726	0.27261639	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	101.33	101.26	3	0.0092094	83821	160511_QHF_FH_JSI10i_3	38.453	21.947			0.89534	0.97409	0.49779	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85356	0.97753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93915	0.97067	NaN	1	0	Median	218750000	109690000	109060000	0	0	0	73494000	36892000	36602000	0	0	0	145250000	72796000	72458000	25832	860	24468	161638;161639	218809;218810	218809			2	
IQPEEKPVEVSPAVTK	2	Unmodified	1749.9513	0.95126548	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	39.051	38.323	3	0.00089799	32855	160511_QHF_FH_JSI11i_2	55.589	45.668			0.94473	1.031	13.849	7	1	Median	1.2357	1.0735	NaN	1	0	Median	0.73328	0.87521	25.411	2	0	Median	1.0625	1.0325	9.2011	2	0	Median	0.93186	1.0148	2.2417	2	1	Median	555820000	303280000	252540000	58128000	29482000	28645000	143740000	86816000	56928000	179550000	91252000	88299000	174400000	95733000	78665000	25833	3494	24469	161640;161641;161642;161643;161644;161645;161646	218811;218812;218813;218814;218815;218816;218817	218816			6	
IQPEILELIK	1	Unmodified	1194.7224	0.72237516	4141	Q96JJ3;Q92556	ELMO2;ELMO1	Engulfment and cell motility protein 2;Engulfment and cell motility protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		92.129	91.722	2	0.002344	80461	160511_QHF_FH_JSI11i_2	60.436	33.834			1.1915	1.1761	2.6767	3	0	Plateau	1.4312	1.2405	NaN	1	0	Median	1.0069	1.203	NaN	1	0	Median	1.1915	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59085000	26202000	32883000	14440000	6627800	7812700	18139000	10562000	7576500	26506000	9011900	17494000	0	0	0	25834	4141	24470	161647;161648;161649	218818;218819;218820	218819			3	
IQPFHFIK	1	Unmodified	1028.5807	0.58073672	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	2	3	1	3	55.302	54.225	2;3	0.0010681	47825	160511_QHF_FH_JSI11i_3	61.999	52.785			0.83917	0.93202	12.092	6	2	Median	1.1763	0.96172	0.77459	2	1	Median	0.81545	0.94137	5.0746	2	1	Median	0.8241	0.77852	NaN	1	0	Median	0.72158	0.7387	NaN	1	0	Median	1352400000	680420000	672000000	413930000	149810000	264120000	282900000	149520000	133380000	261230000	152580000	108650000	394360000	228510000	165850000	25835	3648	24471	161650;161651;161652;161653;161654;161655;161656;161657;161658	218821;218822;218823;218824;218825;218826;218827;218828;218829;218830;218831;218832;218833;218834;218835;218836;218837;218838;218839;218840	218824			20	
IQPFHFIKDPK	2	Acetyl (K)	1410.766	0.76597131	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	72.435	63.586	2;3	0.00013249	34906	160513_QHF_FH_JSI10Kac_6	93.667	67.859			0.84827	0.88626	172.14	7	1	Median	1.0138	0.8668	NaN	1	0	Median	0.88184	1.0593	10.16	2	0	Median	0.66853	0.6485	8.9581	2	0	Median	7.7678	8.2922	316.23	2	1	Median	535890000	281150000	254740000	92874000	45470000	47404000	163540000	83135000	80407000	152590000	95495000	57097000	126880000	57047000	69829000	25836	3648	24472	161659;161660;161661;161662;161663;161664;161665;161666;161667	218841;218842;218843;218844;218845;218846;218847;218848;218849;218850;218851;218852;218853	218851	2909		13	
IQPFQNLTLHPASSSLHYSLQLFEGMK	1	Unmodified	3085.5695	0.56952669	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				89.798	81.13	4	2.6441E-28	45175	160513_QHF_FH_JSI9Kac_6	125.05	97.409			1.2914	1.0999	NaN	1	0	Median	1.2914	1.0999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92447000	38988000	53460000	92447000	38988000	53460000	0	0	0	0	0	0	0	0	0	25837	286	24473	161668	218854	218854			1	
IQPGNPNYTLSLK	1	Unmodified	1443.7722	0.7721789	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.54	4	4					3	4		3	4	4	4	59.903	54.441	2	5.442E-07	47202	160511_QHF_FH_JSI11i_2	133.89	86.29			0.97597	0.97049	9.1618	15	0	Median	1.1495	0.97049	6.6249	3	0	Median	0.78687	0.9524	9.851	4	0	Median	1.0056	1.0883	11.863	4	0	Linear	0.96997	1.0343	10.243	4	0	Median	1636900000	801760000	835140000	356560000	148370000	208190000	404820000	200660000	204160000	512320000	276300000	236020000	363200000	176430000	186770000	25838	2046	24474	161669;161670;161671;161672;161673;161674;161675;161676;161677;161678;161679;161680;161681;161682;161683	218855;218856;218857;218858;218859;218860;218861;218862;218863;218864;218865;218866;218867;218868;218869;218870;218871;218872;218873;218874;218875;218876;218877;218878;218879	218870			25	
IQPGSQQADFLDALIVSMDVIQHETIGK	1	Oxidation (M)	3068.5489	0.54885083	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	0			By MS/MS	By matching	3	0			2									1	1	101.99	102	3	1.9343E-26	91094	160511_QHF_FH_JSI11i_3	137.44	127.11			1.1749	1.1647	0.12835	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2151	1.1657	NaN	1	0	Median	1.136	1.1636	NaN	1	0	Median	466350000	216800000	249540000	0	0	0	0	0	0	178500000	73798000	104700000	287850000	143010000	144840000	25839	1024	24475	161684;161685	218880	218880		622	1	
IQPGSQQADFLDALIVSMDVIQHETIGK	1	Unmodified	3052.5539	0.55393621	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	102.47	99.607	3	2.9775E-116	52567	160513_QHF_FH_JSI9Kac_6	231.84	208.63			0.92995	0.99207	10.619	12	1	Median	1.1959	1	4.4864	3	0	Median	0.91798	1.1004	16.662	3	1	Plateau	0.93089	0.92414	10.053	3	0	Median	0.92901	0.96674	13.772	3	0	Median	9422700000	4710500000	4712200000	1486300000	626880000	859380000	2211100000	1178000000	1033100000	2361200000	1165600000	1195500000	3364100000	1740000000	1624100000	25840	1024	24475	161686;161687;161688;161689;161690;161691;161692;161693;161694;161695;161696;161697	218881;218882;218883;218884;218885;218886;218887;218888;218889;218890;218891;218892;218893;218894;218895;218896;218897;218898;218899;218900;218901;218902;218903	218895			23	
IQPQMDMVEK	1	Unmodified	1217.5784	0.57842982	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.678	42.023	2	0.0011563	37565	160511_QHF_FH_JSI10i_1	67.563	46.938			1.3931	1.2778	25.624	4	2	Median	1.3401	1.0912	NaN	1	0	Median	0.81593	0.96274	NaN	1	0	Median	1.6846	1.6557	NaN	1	1	Median	1.4481	1.4964	NaN	1	1	Median	514340000	266970000	247360000	134560000	66250000	68307000	134090000	81294000	52793000	118860000	54347000	64516000	126830000	65083000	61748000	25841	4817	24476	161698;161699;161700;161701	218904;218905;218906	218906			3	
IQPYTEQSTK	1	Unmodified	1193.5928	0.59281755	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.111	16.862	2	0.0069446	14296	160511_QHF_FH_JSI10i_1	53.683	11.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25842	3480	24477	161702	218907	218907			1	
IQPYYALQHSFFK	1	Unmodified	1640.8351	0.83511351	2459	Q13627	DYRK1A	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	2	1		1	77.162	74.23	3	3.0441E-05	63669	160511_QHF_FH_JSI10i_3	69.92	58.005			1.0306	1.0483	13.492	4	0	Median	1.1493	0.9578	20.239	2	0	Median	0.89929	0.99471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0966	1.1047	NaN	1	0	Median	199760000	82154000	117610000	87579000	36255000	51325000	30334000	12901000	17433000	0	0	0	81847000	32999000	48849000	25843	2459	24478	161703;161704;161705;161706	218908;218909;218910;218911;218912;218913;218914	218910			6	
IQQALTSPLPMTPILEGSHR	0	Unmodified	2188.1674	0.16742304	3474	Q8IZ21	PHACTR4	Phosphatase and actin regulator 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.474	81.248	3	0.04123	70561	160511_QHF_FH_JSI12i_3	35.374	27.186			0.91712	0.9128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91712	0.9128	NaN	1	0	Median	60594000	30885000	29709000	0	0	0	0	0	0	0	0	0	60594000	30885000	29709000	25844	3474	24479	161707	218915	218915			0	
IQQDADSVITVGR	0	Unmodified	1400.726	0.72595699	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	45.573	41.424	2	6.6672E-07	37334	160511_QHF_FH_JSI11i_1	91.937	48.854			0.80001	0.65605	36.415	5	3	Linear	0.68981	0.55238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90588	0.87851	15.739	2	1	Median	1.0402	1.1203	41.503	2	1	Median	626980000	353190000	273790000	253120000	148500000	104610000	0	0	0	208900000	110470000	98436000	164960000	94224000	70740000	25845	4700	24480	161708;161709;161710;161711;161712;161713;161714	218916;218917;218918;218919;218920;218921	218917			6	
IQQDADSVITVGRGEVVTVR	0	Unmodified	2141.144	0.14404506	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			59.921	58.79	3	0.0063676	49192	160511_QHF_FH_JSI10i_3	40.179	23.494			1.0431	1.2686	13.647	3	0	Median	1.4851	1.2926	NaN	1	0	Median	0.9688	1.1328	16.011	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88046000	44264000	43782000	31782000	16011000	15772000	56263000	28253000	28010000	0	0	0	0	0	0	25846	4700	24481	161715;161716;161717	218922;218923;218924;218925	218923			4	
IQQDSGCK	1	Unmodified	934.41783	0.41783007	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		4.7611	-2.5613	2	0.01512	1497	160513_QHF_FH_JSI11Kac_3	60.76	38.138			0.72782	0.77216	26.918	2	0	Median	NaN	NaN	NaN	0	0	Median	0.56132	0.63833	NaN	1	0	Median	0.94371	0.93406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8183100	4052200	4130900	0	0	0	1689200	1008200	681020	6493900	3044000	3449900	0	0	0	25847	3911	24482	161718;161719	218926	218926			1	
IQQEALASLR	0	Unmodified	1127.6299	0.62987176	5822				yes	yes	0	0	0	0				By MS/MS	3	0			1										1	42.783	42.56	2	0.016719	36373	160511_QHF_FH_JSI12i_3	42.599	1.1504	+		1.1733	1.1848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1733	1.1848	NaN	1	0	Median	84283000	32996000	51288000	0	0	0	0	0	0	0	0	0	84283000	32996000	51288000	25848	5822	24483	161720	218927	218927			1	
IQQEIAVQNPLVSER	0	Unmodified	1722.9264	0.92644771	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.423	61.791	2;3	9.8832E-10	54737	160511_QHF_FH_JSI9i_1	146.07	100.7			0.96584	0.9436	16.945	8	0	Median	1.4547	1.1895	22.846	2	0	Median	0.76691	0.90448	0.90708	2	0	Median	0.96584	0.9366	6.1343	2	0	Median	1.0047	1.0572	22.755	2	0	Median	760800000	388170000	372640000	180860000	78220000	102640000	216610000	118920000	97688000	200600000	97977000	102620000	162730000	93043000	69684000	25849	4077	24484	161721;161722;161723;161724;161725;161726;161727;161728	218928;218929;218930;218931;218932;218933;218934;218935;218936;218937;218938	218937			10	
IQQELQTAK	1	Unmodified	1057.5768	0.57677356	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.124	14.665	2	0.0045543	11953	160511_QHF_FH_JSI9i_1	56.729	30.993			1.086	1.044	20.211	4	1	Median	1.2624	1.0412	NaN	1	0	Median	1.1426	1.3677	NaN	1	1	Median	0.84888	0.83455	NaN	1	0	Median	1.0323	1.0468	NaN	1	0	Median	649330000	311480000	337850000	218000000	98123000	119880000	129130000	63691000	65441000	118030000	56714000	61315000	184170000	92950000	91219000	25850	4534	24485	161729;161730;161731;161732	218939;218940;218941	218941			3	
IQQESGCK	1	Unmodified	948.43348	0.43348014	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	5.0164	2.3663	2	0.00027047	2519	160511_QHF_FH_JSI12i_1	114.6	85.264			0.84808	0.85696	23.586	6	0	Median	1.328	1.0951	NaN	1	0	Median	0.65663	0.76852	1.6648	2	0	Median	0.84808	0.82623	18.902	2	0	Median	1.2498	1.309	NaN	1	0	Median	1306300000	647440000	658890000	156840000	67831000	89011000	334870000	203140000	131730000	357440000	182800000	174640000	457180000	193670000	263510000	25851	3966	24486	161733;161734;161735;161736;161737;161738	218942;218943;218944;218945;218946;218947;218948;218949;218950;218951	218944			10	
IQQGALELLR	0	Unmodified	1139.6663	0.66625727	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.035	58.712	2	0.010542	50309	160511_QHF_FH_JSI12i_2	47.574	3.1795			0.77755	0.87224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77755	0.87224	NaN	1	0	Median	116660000	73222000	43437000	0	0	0	0	0	0	0	0	0	116660000	73222000	43437000	25852	3862	24487	161739	218952;218953	218953			2	
IQQIAEGEK	1	Unmodified	1014.5346	0.53457439	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.923	14.494	2	0.033048	12209	160511_QHF_FH_JSI12i_1	47.603	2.5214			0.1796	0.1922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1796	0.1922	NaN	1	1	Median	263650000	220550000	43097000	0	0	0	0	0	0	0	0	0	263650000	220550000	43097000	25853	2523	24488	161740	218954	218954			1	
IQQIIEGK	1	Unmodified	927.53893	0.53893149	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.424	24.885	2	0.011142	22101	160511_QHF_FH_JSI12i_1	54.157	13.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25854	409	24489	161741	218955	218955			1	
IQQILTSTGFSDK	1	Unmodified	1436.7511	0.75110911	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.33	0.471	2	1								1			2	55.73	54.817	2	3.5455E-05	46913	160511_QHF_FH_JSI12i_2	80.706	44.747			1.7903	1.656	10.546	2	2	Median	2.1696	1.7842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4773	1.537	NaN	1	1	Median	68339000	22641000	45698000	27115000	7345200	19770000	0	0	0	0	0	0	41224000	15296000	25929000	25855	5446	24490	161742;161743;161744	218956;218957;218958	218956			3	
IQQLAISGLK	1	Unmodified	1069.6495	0.64954457	5535;1808	P53677;Q9Y2T2	AP3M2;AP3M1	AP-3 complex subunit mu-2;AP-3 complex subunit mu-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	2	4	3	56.967	53.402	2	0.00031818	45722	160511_QHF_FH_JSI12i_2	78.264	0.9462			0.78963	0.81587	23.958	11	0	Median	0.93826	0.78637	5.2083	2	0	Median	0.61873	0.7602	11.019	2	0	Median	0.76428	0.76109	23.331	4	0	Linear	0.74861	0.81166	27.982	3	0	Plateau	704580000	386560000	318030000	116710000	56659000	60051000	173850000	99390000	74462000	254020000	143930000	110090000	160000000	86576000	73421000	25856	1808;5535	24491	161745;161746;161747;161748;161749;161750;161751;161752;161753;161754;161755	218959;218960;218961;218962;218963;218964	218960			5	
IQQLEEIK	1	Unmodified	999.56006	0.56006086	5761				yes	no	0	0	0	0		By MS/MS	By MS/MS		13	0						3					1	2		54.537	45.034	2	0.038214	24401	160513_QHF_FH_JSI11Kac_3	47.067	0	+	+	0.68395	0.80977	8.8516	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68395	0.80977	NaN	1	0	Median	0.92722	0.94394	0	2	0	Median	NaN	NaN	NaN	0	0	Median	23423000	11575000	11849000	0	0	0	11736000	5828700	5907300	11688000	5746200	5941300	0	0	0	25857	5761	24492	161756;161757;161758	218965	218965			1	
IQQLNSNFSQLLEEK	1	Unmodified	1789.921	0.92102798	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							1	2	3	3	78.693	78.234	2	1.7138E-06	68067	160511_QHF_FH_JSI12i_3	131.37	89.969			0.77274	0.79593	32.741	8	4	Median	0.71666	0.61252	NaN	1	0	Median	0.54485	0.63946	61.421	2	1	Median	0.91808	0.85181	22.635	3	2	Median	0.79232	0.85044	23.559	2	1	Median	173980000	98389000	75589000	21269000	13654000	7614200	38737000	25163000	13574000	70738000	35640000	35098000	43234000	23932000	19303000	25858	2574	24493	161759;161760;161761;161762;161763;161764;161765;161766;161767	218966;218967;218968;218969;218970;218971;218972;218973;218974;218975	218975			10	
IQQLQEK	1	Unmodified	885.49198	0.4919813	3015	Q66GS9	CEP135	Centrosomal protein of 135 kDa	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				12.582	11.733	2	0.009353	9154	160511_QHF_FH_JSI9i_1	83.614	6.5566			1.8139	1.4964	NaN	1	1	Median	1.8139	1.4964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140370000	70116000	70256000	140370000	70116000	70256000	0	0	0	0	0	0	0	0	0	25859	3015	24494	161768	218976	218976			1	
IQQLTALGAAQATAK	1	Unmodified	1483.8358	0.83584179	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.24	4.42	10	8					3			4	6	7	4	52.443	50.211	2;3	3.4632E-15	45765	160511_QHF_FH_JSI12i_1	166.6	104.95			0.99192	1.0353	14.972	21	5	Median	1.161	0.83882	16.321	4	1	Linear	0.88917	1.0406	11.348	6	2	Median	1.1101	1.1112	18.785	7	2	Median	0.96674	1.0398	12.498	4	0	Median	2475700000	1198700000	1277000000	376820000	174930000	201900000	690640000	378670000	311970000	807780000	358970000	448810000	600430000	286130000	314290000	25860	4274	24495	161769;161770;161771;161772;161773;161774;161775;161776;161777;161778;161779;161780;161781;161782;161783;161784;161785;161786;161787;161788;161789	218977;218978;218979;218980;218981;218982;218983;218984;218985;218986;218987;218988;218989;218990;218991;218992;218993;218994;218995;218996;218997;218998;218999;219000;219001	218984			25	
IQQLVKEFFNGK	2	Acetyl (K)	1491.8086	0.80856441	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.061	73.745	2	1.0704E-09	40656	160513_QHF_FH_JSI11Kac_6	152.07	76.775			0.0035913	0.0033362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0035913	0.0033362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54163000	54058000	104680	0	0	0	0	0	0	54163000	54058000	104680	0	0	0	25861	982	24496	161790	219002	219002	763;767		1	
IQQLVQDIASLTLLEISDLNELLK	1	Unmodified	2708.5212	0.52116274	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		4							10	3	5	4	2	105.04	99.372	2;3	0	58708	160513_QHF_FH_JSI10Kac_6	388.21	342.42			0.9249	1.0643	86.373	8	7	Median	2.3181	1.9826	NaN	1	0	Median	1.0219	1.2326	76.497	4	4	Median	0.25828	0.25188	6.6327	2	2	Median	0.89144	0.96174	NaN	1	1	Median	3420100000	1113900000	2306200000	117800000	30248000	87547000	2581700000	1000200000	1581500000	212030000	69499000	142530000	508550000	13955000	494600000	25862	1786	24497	161791;161792;161793;161794;161795;161796;161797;161798;161799;161800;161801;161802;161803;161804	219003;219004;219005;219006;219007;219008;219009;219010;219011;219012;219013;219014;219015;219016;219017	219015			15	
IQQMLPDK	1	Unmodified	971.511	0.51100218	5371;5216	Q9P2K3;Q8IZ40;Q9UKL0	RCOR3;RCOR2;RCOR1	REST corepressor 3;REST corepressor 2;REST corepressor 1	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	29.844	29.505	2	0.016966	26514	160511_QHF_FH_JSI12i_1	58.917	8.7976			1.057	1.029	20.996	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2636	1.2274	24.933	2	2	Median	0.96714	1.0075	NaN	1	1	Median	208830000	101190000	107640000	0	0	0	0	0	0	118820000	52518000	66297000	90015000	48676000	41340000	25863	5216;5371	24498	161805;161806;161807	219018;219019;219020	219020			3	
IQQNTFTR	0	Unmodified	1006.5196	0.51959303	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	1	3	16.205	15.655	2	0.0049824	13182	160511_QHF_FH_JSI10i_2	67.032	19.183			1.0754	1.118	17.751	8	1	Median	1.497	1.2438	20.136	2	0	Median	0.94407	1.1488	12.014	2	0	Median	0.79251	0.81174	NaN	1	0	Median	1.1179	1.1587	13.002	3	1	Median	4360800000	2173700000	2187000000	895240000	385570000	509680000	1253000000	696430000	556570000	540610000	264640000	275970000	1671900000	827090000	844830000	25864	1192;512;2527	24499	161808;161809;161810;161811;161812;161813;161814;161815	219021;219022;219023;219024;219025;219026;219027;219028;219029;219030	219028			10	
IQQQFSDLK	1	Unmodified	1105.5768	0.57677356	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.759	32.158	2	0.00019186	28632	160511_QHF_FH_JSI10i_1	85.676	60.782			1.0698	1.0697	2.8145	4	0	Median	1.3016	1.0741	NaN	1	0	Median	0.8883	1.0175	NaN	1	0	Median	1.1	1.0653	NaN	1	0	Median	1.0403	1.0841	NaN	1	0	Median	547410000	267320000	280090000	140450000	61918000	78535000	119950000	62876000	57071000	161600000	80252000	81346000	125410000	62269000	63142000	25865	623	24500	161816;161817;161818;161819	219031;219032;219033;219034;219035	219034			5	
IQQQQPPPGEK	1	Unmodified	1248.6463	0.64625011	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	10.669	8.9178	2	7.1372E-38	7744	160511_QHF_FH_JSI12i_1	204.07	155.28			1.006	0.97423	11.148	5	0	Median	1.4079	1.1758	NaN	1	0	Median	0.83564	0.97268	NaN	1	0	Median	1.1329	1.085	15.229	2	0	Median	0.9088	0.97276	NaN	1	0	Median	1193900000	602630000	591230000	332670000	146070000	186600000	306590000	174110000	132490000	284080000	138550000	145540000	270520000	143910000	126610000	25866	1283	24501	161820;161821;161822;161823;161824	219036;219037;219038;219039;219040;219041;219042;219043;219044;219045;219046;219047;219048;219049;219050;219051;219052;219053	219044			18	
IQQSYKK	2	Unmodified	893.49707	0.49706667	5175	Q9P031	CCDC59	Thyroid transcription factor 1-associated protein 26	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			5.8258	5.3162	2	0.020266	3350	160511_QHF_FH_JSI9i_3	57.559	19.321			1.0529	1.0226	11.467	2	0	Median	1.1519	0.94294	NaN	1	0	Median	0.96245	1.1089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48736000	22812000	25924000	29046000	13495000	15551000	19691000	9317400	10373000	0	0	0	0	0	0	25867	5175	24502	161825;161826	219054	219054			1	
IQQYISHR	0	Unmodified	1043.5512	0.55122751	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			13.446	10.671	3	0.0013931	8754	160511_QHF_FH_JSI9i_3	56.434	43.644			1.3794	1.2199	9.1431	3	1	Plateau	1.483	1.2199	NaN	1	0	Median	1.0416	1.2126	12.921	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	232770000	105050000	127720000	118410000	52725000	65682000	114360000	52323000	62042000	0	0	0	0	0	0	25868	2858	24503	161827;161828;161829	219055;219056;219057;219058	219057			4	
IQRPPEDSIQPYEK	1	Unmodified	1698.8577	0.85769944	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.75	2	4	5							2	3	4	2	34.763	34.096	2;3	4.7748E-05	29749	160511_QHF_FH_JSI11i_3	105.46	81.618			1.0065	1.0487	10.904	11	1	Median	1.407	1.1686	16.206	2	0	Median	0.79732	0.94298	12.562	3	0	Median	1.0358	1.0219	10.726	4	0	Median	1.0076	1.068	1.2293	2	1	Median	1919100000	976660000	942470000	312340000	141410000	170920000	504150000	274740000	229410000	865150000	428520000	436630000	237490000	131970000	105520000	25869	2772	24504	161830;161831;161832;161833;161834;161835;161836;161837;161838;161839;161840	219059;219060;219061;219062;219063;219064;219065;219066;219067;219068;219069;219070;219071;219072;219073;219074;219075;219076;219077;219078;219079;219080;219081;219082;219083	219061			25	
IQRVDFDIFHPSLQQK	1	Unmodified	1970.0374	0.037395144	2809	Q330K2	NDUFAF6	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.51	100.53	3	0.058307	87032	160511_QHF_FH_JSI12i_3	26.148	1.8605			0.83474	0.86639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83474	0.86639	NaN	1	0	Median	49460000	30821000	18639000	0	0	0	0	0	0	0	0	0	49460000	30821000	18639000	25870	2809	24505	161841	219084	219084			1	
IQSATVLLNEDVSDEK	1	Unmodified	1759.884	0.88397377	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	60.298	59.662	2	5.2278E-07	54256	160511_QHF_FH_JSI12i_1	131.26	112.99			1.0535	1.0254	20.055	4	2	Median	1.2919	1.0772	NaN	1	0	Median	0.91007	1.0498	33.948	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94289	0.97611	NaN	1	0	Median	104680000	50011000	54668000	23306000	8243900	15062000	52227000	26029000	26199000	0	0	0	29145000	15738000	13407000	25871	3648	24506	161842;161843;161844;161845;161846	219085;219086;219087;219088;219089;219090;219091	219086			7	
IQSFKPETYWVLQAK	2	Unmodified	1836.9774	0.97742065	745	O95985	TOP3B	DNA topoisomerase 3-beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.092	73.297	3	0.0041561	60403	160511_QHF_FH_JSI9i_3	47.545	35.854			1.0593	1.0223	9.5273	4	1	Median	1.3284	1.0959	NaN	1	0	Median	0.7533	0.87815	NaN	1	1	Median	1.0461	0.99983	NaN	1	0	Median	1.0726	1.0453	NaN	1	0	Median	268850000	122020000	146820000	41416000	16427000	24989000	37868000	20029000	17838000	61494000	25880000	35614000	128070000	59685000	68383000	25872	745	24507	161847;161848;161849;161850	219092;219093;219094;219095;219096;219097;219098	219095			7	
IQSFLGGAPTEDLK	1	Unmodified	1474.7668	0.76675917	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	66.358	65.63	2	2.8301E-05	59674	160511_QHF_FH_JSI11i_1	118.76	78.406			1.915	1.8305	43.252	6	4	Median	2.4243	2.0559	52.394	2	0	Median	2.1101	2.5484	NaN	1	1	Median	1.8676	1.8305	32.368	2	2	Median	0.92597	0.95682	NaN	1	1	Median	550050000	205040000	345020000	176560000	57538000	119030000	49264000	22451000	26814000	221680000	78035000	143640000	102550000	47013000	55534000	25873	2404	24508	161851;161852;161853;161854;161855;161856;161857;161858;161859	219099;219100;219101;219102;219103;219104;219105;219106;219107	219099			9	
IQSGFSFK	1	Unmodified	912.47052	0.47051757	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	41.499	40.821	2	0.0046723	35768	160511_QHF_FH_JSI11i_3	67.981	41.872			1.1425	1.2931	33.736	6	0	Median	1.8965	1.6436	NaN	1	0	Median	1.2494	1.5804	NaN	1	0	Median	0.93904	0.9103	21.259	2	0	Median	1.1154	1.1672	44.154	2	0	Median	440120000	221050000	219070000	42715000	13032000	29683000	40953000	20017000	20936000	156310000	73765000	82545000	200140000	114230000	85906000	25874	4262	24509	161860;161861;161862;161863;161864;161865	219108;219109;219110;219111	219108			4	
IQSGQSSTVIENIHTIIAAAAVK	1	Unmodified	2350.2856	0.28562392	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		99.794	99.7	3	2.478E-07	88494	160511_QHF_FH_JSI11i_3	83.905	66.975			1.032	0.88537	13.261	4	2	Median	1.0998	0.89902	NaN	1	0	Median	0.65359	0.76187	NaN	1	0	Median	1.0525	0.95789	13.298	2	2	Median	NaN	NaN	NaN	0	0	Median	178620000	79716000	98901000	39839000	19776000	20062000	37880000	18674000	19206000	100900000	41266000	59632000	0	0	0	25875	5468	24510	161866;161867;161868;161869	219112;219113;219114;219115;219116	219113			5	
IQSQFTDAQK	1	Unmodified	1164.5775	0.57750184	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	22.779	20.885	2	1.8571E-09	17977	160511_QHF_FH_JSI10i_1	132.01	104.76			0.96469	0.96141	15.305	6	1	Median	1.0312	0.84737	NaN	1	0	Median	0.82312	0.98105	12.544	2	1	Median	0.88	0.87046	23.738	2	0	Median	1.0112	1.0789	NaN	1	0	Median	1560500000	782220000	778290000	315420000	180270000	135160000	414970000	234780000	180190000	411750000	184340000	227410000	418370000	182840000	235530000	25876	1085	24511	161870;161871;161872;161873;161874;161875;161876	219117;219118;219119;219120;219121;219122;219123;219124;219125;219126;219127;219128;219129	219122			13	
IQSQNDREK	1	Unmodified	1116.5523	0.55234972	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.12	0.781	2	3	3							1	3	4		1.9915	1.7783	2;3	0.0054279	1094	160511_QHF_FH_JSI9i_2	50.034	35.827			0.89418	0.92726	35.61	8	0	Median	1.2497	1.0978	NaN	1	0	Median	1.5671	1.9281	44.95	3	0	Plateau	0.89098	0.85797	19.52	4	0	Median	NaN	NaN	NaN	0	0	Median	464370000	226310000	238060000	103380000	46252000	57131000	174940000	84333000	90605000	186050000	95722000	90325000	0	0	0	25877	5215	24512	161877;161878;161879;161880;161881;161882;161883;161884	219130;219131;219132;219133;219134;219135;219136;219137;219138;219139;219140;219141;219142	219139			13	
IQSSGGPLQITMK	1	Unmodified	1358.7228	0.72278587	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	54.32	53.21	2	0.0008538	45607	160511_QHF_FH_JSI12i_2	67.385	38.986			0.8131	0.9497	8.0042	3	1	Plateau	1.2247	1.0595	NaN	1	1	Median	0.83081	0.99753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8131	0.90415	NaN	1	0	Median	164520000	78996000	85524000	58466000	27854000	30612000	50652000	27046000	23605000	0	0	0	55401000	24095000	31306000	25878	4821	24513	161885;161886;161887	219143;219144	219143			2	
IQSSHNFQLESVNK	1	Unmodified	1629.8111	0.8110836	3592	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	1	2	3	2	36.351	33.438	2;3	6.8912E-07	28230	160511_QHF_FH_JSI12i_3	137.59	113.56			0.95639	1.0426	22.89	7	0	Median	0.86975	0.75248	NaN	1	0	Median	0.94495	1.0827	NaN	1	0	Median	1.3155	1.3114	26.324	3	0	Median	0.99358	1.0073	4.874	2	0	Median	679650000	321170000	358490000	3955100	2113500	1841600	47148000	23938000	23211000	355760000	148090000	207670000	272790000	147030000	125760000	25879	3592	24514	161888;161889;161890;161891;161892;161893;161894;161895	219145;219146;219147;219148;219149;219150;219151;219152;219153;219154;219155;219156	219155			12	
IQSTPVK	1	Unmodified	771.44905	0.44905385	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.86	4	4	1			2	2	1		2	3	5	4	11.944	8.8639	2	0.0089406	7691	160511_QHF_FH_JSI10i_1	81.297	28.614			0.94318	1.0115	36.32	14	0	Median	1.2317	1.0097	16.732	2	0	Median	0.93564	1.0797	11.262	3	0	Median	0.95078	0.96395	57.728	5	0	Median	0.75526	0.83191	21.123	4	0	Median	6749000000	2864200000	3884800000	1291300000	474620000	816720000	1952200000	949690000	1002500000	1851700000	661040000	1190700000	1653700000	778860000	874880000	25880	2020	24515	161896;161897;161898;161899;161900;161901;161902;161903;161904;161905;161906;161907;161908;161909	219157;219158;219159;219160;219161;219162;219163;219164;219165;219166;219167;219168;219169;219170;219171;219172;219173;219174;219175;219176;219177;219178;219179;219180	219166			24	
IQSTVTQPGGK	1	Unmodified	1114.5982	0.59823728	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.67	14.216	2	7.5096E-06	11945	160511_QHF_FH_JSI12i_1	109.66	72.105			1.046	1.0642	6.4275	4	1	Median	1.3533	1.1319	NaN	1	1	Median	0.83256	0.97026	NaN	1	0	Median	1.0914	1.0771	NaN	1	0	Median	1.0026	1.0513	NaN	1	0	Median	883810000	463830000	419980000	206870000	106950000	99920000	243350000	133700000	109650000	232050000	119840000	112210000	201550000	103350000	98205000	25881	2638;2895	24516	161910;161911;161912;161913	219181;219182;219183;219184;219185;219186;219187	219183			7	
IQTDSVVATLK	1	Unmodified	1173.6605	0.66050319	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		59.729	48.695	2	0.040247	27809	160513_QHF_FH_JSI11Kac_4	40.724	14.122			0.7731	0.75753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7731	0.75753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4490100	2241500	2248500	0	0	0	0	0	0	4490100	2241500	2248500	0	0	0	25882	901	24517	161914	219188	219188			1	
IQTLPNQNQSQTQPLLK	1	Unmodified	1950.0534	0.053439139	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	51.745	51.071	2;3	1.0241E-10	46226	160511_QHF_FH_JSI11i_1	145.6	113.96			0.86833	0.83776	17.792	8	0	Median	0.8334	0.68354	9.0872	2	0	Median	0.62977	0.73364	19.744	2	0	Median	0.91053	0.8629	5.1553	2	0	Median	0.93607	0.97549	13.238	2	0	Median	631250000	339700000	291550000	165460000	80809000	84655000	145970000	86277000	59688000	173460000	95625000	77834000	146360000	76989000	69367000	25883	3438	24518	161915;161916;161917;161918;161919;161920;161921;161922	219189;219190;219191;219192;219193;219194;219195;219196;219197;219198	219190			9	
IQTLTSSVR	0	Unmodified	1003.5662	0.56620887	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.18	3	3	3				2	2	1	3	4	5	2	29.13	25.441	2	0.0011621	21717	160511_QHF_FH_JSI11i_3	70.256	30.153			0.96697	0.9637	24.82	14	0	Median	1.3191	1.1382	6.5038	3	0	Median	0.7415	0.89332	20.768	4	0	Median	0.95687	0.94885	27.5	5	0	Median	0.75827	0.77811	34.048	2	0	Median	3589500000	1807700000	1781800000	504540000	231750000	272790000	865790000	491420000	374370000	1397800000	732560000	665220000	821350000	351930000	469410000	25884	1100	24519	161923;161924;161925;161926;161927;161928;161929;161930;161931;161932;161933;161934;161935;161936	219199;219200;219201;219202;219203;219204;219205;219206;219207	219199			9	
IQTNNNPFQVPIEEQR	0	Unmodified	1925.9595	0.95953875	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.115	64.484	2	0.0042338	58721	160511_QHF_FH_JSI12i_1	54.7	24.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25885	2214	24520	161937	219208	219208			1	
IQTNNNPFQVPIEEQRGDYDLNAVR	0	Unmodified	2929.4318	0.43184724	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	75.926	75.742	3	5.7026E-09	67650	160511_QHF_FH_JSI11i_3	89.946	75.883			1.1353	1.0835	9.7732	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.0835	NaN	1	1	Median	1.006	1.0304	13.197	2	2	Median	124870000	63931000	60938000	0	0	0	0	0	0	55885000	33119000	22766000	68984000	30812000	38172000	25886	2214	24521	161938;161939;161940	219209;219210;219211;219212	219209			4	
IQTPELGEVFQNK	1	Unmodified	1501.7777	0.77765821	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	71.911	70.847	2	0.0015947	61072	160511_QHF_FH_JSI12i_2	73.067	47.681			0.73492	0.82149	11.798	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70624	0.71685	NaN	1	1	Median	0.67399	0.73043	16.615	2	2	Median	48434000	25042000	23392000	0	0	0	0	0	0	19482000	11282000	8199900	28952000	13759000	15192000	25887	2899	24522	161941;161942;161943	219213;219214;219215	219213			3	
IQTQLNLIHPDIFPLLTSFR	0	Unmodified	2365.3158	0.31580184	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.45	102.28	3	0.00028219	83167	160511_QHF_FH_JSI9i_3	56.719	42.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25888	4348	24523	161944	219216	219216			1	
IQTQPGYANTLR	0	Unmodified	1360.7099	0.709913	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.46	4	4	4			1	3	4	3	5	7	5	6	37.328	32.483	2	3.5489E-12	17680	160513_QHF_FH_JSI9Kac_5	125.48	93.545			1.0374	1.0543	9.1231	22	0	Median	1.2875	1.0707	4.3649	5	0	Median	0.80184	0.95179	9.2924	6	0	Median	1.0591	1.0416	7.9103	5	0	Median	1.0185	1.1234	8.9171	6	0	Median	13248000000	6457700000	6790200000	2327900000	937460000	1390500000	3376100000	1763200000	1612900000	4367200000	2250400000	2116800000	3176700000	1506700000	1670000000	25889	2146	24524	161945;161946;161947;161948;161949;161950;161951;161952;161953;161954;161955;161956;161957;161958;161959;161960;161961;161962;161963;161964;161965;161966;161967	219217;219218;219219;219220;219221;219222;219223;219224;219225;219226;219227;219228;219229;219230;219231;219232;219233;219234;219235;219236;219237;219238;219239;219240;219241;219242;219243;219244;219245;219246;219247;219248;219249;219250;219251;219252;219253;219254;219255;219256;219257;219258;219259	219230			43	
IQTQPGYANTLRDAAPK	1	Unmodified	1842.9588	0.95881047	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				42.169	40.609	3	0.030446	33158	160511_QHF_FH_JSI9i_3	35.329	23.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18155000	18155000	0	18155000	18155000	0	0	0	0	0	0	0	0	0	0	25890	2146	24525	161968	219260	219260			1	
IQTSFYELPTDSHASLR	0	Unmodified	1963.964	0.96395543	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	63.565	62.967	2;3	8.0251E-09	54259	160511_QHF_FH_JSI12i_3	116.13	109.7			0.82155	0.88321	26.929	6	1	Median	0.66611	0.58668	NaN	1	0	Median	0.71761	0.86696	NaN	1	0	Median	1.0468	1.0136	16.85	2	1	Median	0.96243	1.0154	30.391	2	0	Median	956810000	464590000	492210000	102800000	53631000	49169000	157650000	95584000	62070000	396850000	194100000	202750000	299510000	121280000	178230000	25891	5666	24526	161969;161970;161971;161972;161973;161974;161975	219261;219262;219263;219264;219265;219266;219267	219266			6	
IQTTVTELQK	1	Unmodified	1159.6449	0.64485312	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.091	34.486	2	0.011311	31232	160511_QHF_FH_JSI12i_1	56.432	24.497			2.3	2.238	37.518	4	3	Median	2.1561	1.7843	NaN	1	1	Median	1.6567	1.9357	NaN	1	0	Median	4.201	4.0927	NaN	1	1	Median	2.4534	2.5876	NaN	1	1	Median	253680000	89306000	164370000	76156000	27595000	48561000	57287000	24144000	33143000	58454000	14995000	43459000	61781000	22572000	39209000	25892	2627	24527	161976;161977;161978;161979	219268;219269;219270;219271	219269			4	
IQTYAEYMGR	0	Unmodified	1230.5703	0.57030797	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		41.052	40.336	2	0.0028184	34614	160511_QHF_FH_JSI11i_2	57.59	41.387			0.81378	0.90232	1.0804	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74613	0.90924	NaN	1	0	Median	0.88757	0.89545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106850000	46740000	60113000	0	0	0	35607000	15679000	19929000	71245000	31061000	40184000	0	0	0	25893	695	24528	161980;161981	219272	219272			1	
IQTYLQSTKPIIDLYEEMGK	2	Unmodified	2369.2188	0.21884949	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	98.567	98.539	3	2.0145E-05	87786	160511_QHF_FH_JSI11i_3	69.763	54.171			0.93906	0.82608	21.891	3	1	Median	0.93906	0.82608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69625	0.64752	NaN	1	0	Median	0.98707	1.0023	NaN	1	0	Median	217110000	126340000	90766000	13085000	5622400	7462600	0	0	0	102460000	58679000	43782000	101560000	62043000	39521000	25894	1342	24529	161982;161983;161984	219273;219274;219275;219276;219277;219278	219274			6	
IQVDVDNFFSVFGYK	1	Unmodified	1776.8723	0.87228688	5824				yes	yes	0	0	0	0		By MS/MS			1	0	1										1			61.165	60.777	2	0.0012471	54968	160511_QHF_FH_JSI10i_1	60.518	25.104	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25895	5824	24530	161985	219279	219279			1	
IQVEHGVTGSFK	1	Unmodified	1300.6776	0.67755023	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	32.587	32.494	2	0.00033458	27526	160511_QHF_FH_JSI12i_3	72.006	42.196			1.1013	1.1649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1013	1.1649	NaN	1	0	Median	21360000	9852700	11507000	0	0	0	0	0	0	0	0	0	21360000	9852700	11507000	25896	162	24531	161986	219280	219280			1	
IQVHPYK	1	Unmodified	883.49159	0.49158736	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	16.098	15.668	2;3	0.0083606	12772	160511_QHF_FH_JSI11i_3	83.801	57.692			0.87132	0.9015	10.23	7	0	Median	1.1084	0.9015	NaN	1	0	Median	0.82294	0.95774	7.2122	2	0	Median	0.97066	0.92828	12.817	2	0	Median	0.78241	0.79309	1.1922	2	0	Median	1039500000	534650000	504820000	38221000	15445000	22776000	143680000	69464000	74219000	391080000	195310000	195770000	466480000	254430000	212050000	25897	4930	24532	161987;161988;161989;161990;161991;161992;161993	219281;219282;219283;219284;219285;219286;219287	219281			7	
IQVHYYEDGNVQLVSHK	1	Unmodified	2028.0065	0.0064889465	1788;1606	P47755;P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.36	6.65		2	5						7	3	3	3	5	52.681	47.497	2;3;4	7.5952E-41	40542	160511_QHF_FH_JSI12i_3	200.75	176.21			1.1488	1.1088	19.589	13	4	Median	1.3027	1.125	1.676	3	1	Median	0.84736	1.0584	15.688	3	1	Median	1.1488	1.1088	4.3716	3	0	Median	1.0359	1.0815	34.91	4	2	Median	2269400000	1146900000	1122500000	135270000	54036000	81236000	179120000	100220000	78898000	621150000	319580000	301570000	1333900000	673080000	660790000	25898	1606;1788	24533	161994;161995;161996;161997;161998;161999;162000;162001;162002;162003;162004;162005;162006;162007	219288;219289;219290;219291;219292;219293;219294;219295;219296;219297;219298;219299;219300;219301;219302;219303	219296			16	
IQVIDISMILAEAIR	0	Unmodified	1683.9593	0.95932774	1920;1008	P60891;P11908	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	2	2	1	1	101.23	97.14	2;3	1.0147E-33	49587	160513_QHF_FH_JSI12Kac_6	174.65	135.39			1.1913	1.2795	14.592	6	2	Median	1.4096	1.2207	21.001	2	0	Median	1.1592	1.4072	3.2941	2	2	Median	1.1825	1.1909	NaN	1	0	Median	1.0015	1.0515	NaN	1	0	Median	1116100000	533120000	582940000	304930000	142740000	162190000	517690000	242520000	275170000	69268000	34484000	34784000	224170000	113370000	110800000	25899	1920;1008	24534	162008;162009;162010;162011;162012;162013	219304;219305;219306;219307;219308;219309	219308			5	
IQVIDISMILAEAIRR	0	Unmodified	1840.0604	0.060438772	1920;1008	P60891;P11908	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.281	88.862	3	1.6074E-43	53016	160513_QHF_FH_JSI10Kac_6	176.29	152.81			1.2111	1.0046	10.946	4	0	Linear	1.2944	1.0968	NaN	1	0	Median	0.87717	1.0448	NaN	1	0	Median	1.4069	1.3395	NaN	1	0	Median	1.1331	1.2017	NaN	1	0	Median	1824900000	880370000	944540000	458470000	203310000	255150000	728460000	394480000	333980000	311330000	131940000	179380000	326660000	150640000	176020000	25900	1920;1008	24535	162014;162015;162016;162017	219310;219311;219312;219313;219314;219315	219314			6	
IQVKRSRSK	2	Unmodified	1100.6778	0.67782501	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	3			By MS/MS		16	0									1			1		79.267	69.953	3	0.052144	38341	160513_QHF_FH_JSI11Kac_6	28.013	14.421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25901	719	24536	162018	219316	219316			1	
IQVLGSLVSLEMGK	1	Unmodified	1472.8273	0.82725094	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3	3	6	2	2	95.044	93.234	2;3	2.3088E-05	83974	160511_QHF_FH_JSI12i_3	88.075	76.156			0.95362	0.92101	33.837	12	3	Median	1.0784	0.93264	19.366	3	1	Median	0.69744	0.80724	42.912	6	1	Median	1.3666	1.3169	NaN	1	1	Median	0.87313	0.90727	36.866	2	0	Median	485730000	246670000	239060000	160400000	72795000	87607000	231410000	130040000	101370000	8263500	3784900	4478600	85655000	40046000	45609000	25902	1659	24537	162019;162020;162021;162022;162023;162024;162025;162026;162027;162028;162029;162030;162031	219317;219318;219319;219320;219321;219322;219323;219324;219325;219326;219327;219328;219329;219330;219331;219332;219333;219334;219335	219333			19	
IQVLGSLVSLEMGK	1	Oxidation (M)	1488.8222	0.82216556	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	1	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	87.278	87.146	2	0.005107	75552	160511_QHF_FH_JSI12i_3	78.692	53.033			1.6097	1.6332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6097	1.6332	NaN	1	1	Median	26111000	11266000	14845000	0	0	0	0	0	0	0	0	0	26111000	11266000	14845000	25903	1659	24537	162032;162033	219336;219337	219336		1344	2	
IQVLVEPDHFK	1	Unmodified	1323.7187	0.71868677	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							3	4	5	4	56.142	55.394	2;3	5.6435E-10	48872	160511_QHF_FH_JSI11i_3	111.63	100.42			1.0825	1.0715	12.68	16	1	Median	1.1118	0.92828	16.214	3	1	Plateau	0.83236	1.0018	12.354	4	0	Median	1.2018	1.1544	6.0051	5	0	Median	1.1056	1.1783	9.3221	4	0	Median	6800700000	3253300000	3547400000	841350000	391340000	450010000	1750400000	904540000	845840000	2440800000	1265500000	1175300000	1768100000	691870000	1076200000	25904	1130	24538	162034;162035;162036;162037;162038;162039;162040;162041;162042;162043;162044;162045;162046;162047;162048;162049	219338;219339;219340;219341;219342;219343;219344;219345;219346;219347;219348;219349;219350;219351;219352;219353;219354;219355;219356;219357;219358;219359;219360;219361;219362;219363;219364;219365;219366;219367	219338			30	
IQVNHPAVLR	0	Unmodified	1145.6669	0.66692597	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	3	1		31.593	30.569	2;3	0.00010546	24813	160511_QHF_FH_JSI9i_3	68.847	55.154			0.86565	0.8996	21.86	6	2	Median	1.0967	0.92803	2.0652	2	0	Median	0.77885	0.88488	18.842	3	2	Median	0.61512	0.59048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	423040000	194260000	228790000	214080000	83576000	130500000	154340000	78587000	75753000	54627000	32095000	22532000	0	0	0	25905	5555	24539	162050;162051;162052;162053;162054;162055	219368;219369;219370;219371;219372;219373;219374	219372			7	
IQVSPFLQQMFMPLLHAIFEVLLRPAEENDQSAALEK	1	Oxidation (M)	4268.2014	0.20137229	344	O43592	XPOT	Exportin-T	yes	yes	0	0	1	1		By MS/MS			16	0									2		2			103.97	98.248	4	1.186E-171	57722	160513_QHF_FH_JSI10Kac_6	263.22	226.13			1.0421	1.2539	42.069	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0421	1.2539	42.069	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	413450000	213510000	199940000	0	0	0	413450000	213510000	199940000	0	0	0	0	0	0	25906	344	24540	162056;162057	219375;219376;219377	219376		132;133	3	
IQVSPFLQQMFMPLLHAIFEVLLRPAEENDQSAALEK	1	Unmodified	4252.2065	0.20645767	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			105.4	99.678	4	7.3054E-194	59038	160513_QHF_FH_JSI10Kac_6	282.32	261.24			0.81405	0.97626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81405	0.97626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	457810000	255500000	202310000	0	0	0	457810000	255500000	202310000	0	0	0	0	0	0	25907	344	24540	162058	219378	219378			1	
IQVTPPGFQLVFLPFADDK	1	Unmodified	2131.1354	0.13537785	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.94	6.75		7	3						7	3	5	4	5	100.83	97.351	2;3	6.4737E-86	48804	160513_QHF_FH_JSI12Kac_6	218.98	174.36			0.97832	0.99877	12.214	17	1	Median	1.0566	0.90235	9.8392	3	0	Median	0.86108	1.0592	12.24	5	1	Median	0.99649	0.97091	7.9112	4	0	Median	0.87268	0.99877	10.214	5	0	Median	4983400000	2613300000	2370100000	663940000	326960000	336970000	1225400000	654910000	570450000	1184900000	604020000	580880000	1909200000	1027400000	881780000	25908	1023	24541	162059;162060;162061;162062;162063;162064;162065;162066;162067;162068;162069;162070;162071;162072;162073;162074;162075	219379;219380;219381;219382;219383;219384;219385;219386;219387;219388;219389;219390;219391;219392;219393;219394;219395;219396;219397;219398;219399;219400;219401;219402;219403;219404;219405	219401			27	
IQVWHAEHR	0	Unmodified	1174.5996	0.59957468	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				24.7	23.37	3;4	0.030969	18694	160511_QHF_FH_JSI9i_3	20.777	12.852			0.6584	0.55307	58.785	2	1	Median	0.6584	0.55307	58.785	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29320000	18072000	11248000	29320000	18072000	11248000	0	0	0	0	0	0	0	0	0	25909	1073	24542	162076;162077	219406;219407	219406			2	
IQVWLYEQVNMR	0	Unmodified	1577.8024	0.80243317	1997	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	0	0	0		By MS/MS	By MS/MS		11.3	6.6		1							2		2	1		80.772	75.175	2	0.0065662	41344	160513_QHF_FH_JSI10Kac_6	64.103	41.57			0.72348	0.83664	23.921	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72348	0.83664	23.921	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108280000	55105000	53173000	0	0	0	108280000	55105000	53173000	0	0	0	0	0	0	25910	1997	24543	162078;162079;162080	219408;219409;219410	219410			3	
IQVWLYEQVNMR	0	Oxidation (M)	1593.7973	0.79734779	1997	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	0	1	0				By MS/MS	16	0									2				2	78.167	68.724	2;3	0.0012978	36233	160513_QHF_FH_JSI12Kac_6	83	58.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17562000	17562000	0	0	0	0	0	0	0	0	0	0	17562000	17562000	0	25911	1997	24543	162081;162082	219411;219412	219411		1661	2	
IQYEMEYTEGISQR	0	Unmodified	1745.7931	0.79305028	4613	Q9GZY8	MFF	Mitochondrial fission factor	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		55.461	55.049	2	0.0031403	49881	160511_QHF_FH_JSI11i_1	57.175	24.845			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25912	4613	24544	162083;162084	219413;219414	219413			2	
IQYQLVDISQDNALRDEMR	0	Unmodified	2306.1325	0.1324941	4669	Q9H299	SH3BGRL3	SH3 domain-binding glutamic acid-rich-like protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	75.827	75.413	3	3.4973E-05	67268	160511_QHF_FH_JSI11i_3	71.558	50.933			0.6673	0.70736	11.472	4	0	Median	NaN	NaN	NaN	0	0	Median	0.57911	0.70456	NaN	1	0	Median	0.67202	0.6431	14.028	2	0	Median	0.75358	0.76094	NaN	1	0	Median	246780000	146500000	100280000	0	0	0	51137000	28985000	22152000	132960000	85316000	47648000	62676000	32195000	30481000	25913	4669	24545	162085;162086;162087;162088	219415;219416;219417;219418;219419;219420;219421;219422	219415			8	
IRADIEVACYGYEGIDAVK	1	Unmodified	2141.0463	0.046304851	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.599	73.308	3	3.1863E-06	63663	160511_QHF_FH_JSI12i_3	93.684	77.377			0.91831	0.96096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91831	0.96096	NaN	1	0	Median	14064000	9090300	4973500	0	0	0	0	0	0	0	0	0	14064000	9090300	4973500	25914	832	24546	162089	219423	219423			1	
IRAEAMQEASEAVPSGMLSVLGQPQSK	1	Unmodified	2813.4052	0.40516348	3410	Q8IVS2	MCAT	Malonyl-CoA-acyl carrier protein transacylase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				89.117	87.968	3	0.007906	72105	160511_QHF_FH_JSI9i_3	31.384	19.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25915	3410	24547	162090	219424	219424			1	
IRAENGTGSSPR	0	Unmodified	1243.6269	0.62691165	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	1	By MS/MS	By MS/MS			7	6.38		2	2						2	3	3			5.8111	3.1937	3	0.0056635	2687	160511_QHF_FH_JSI9i_2	36.284	6.3579			0.85084	0.86438	20.141	6	0	Median	1.1696	0.99087	12.375	3	0	Median	0.66514	0.80827	23.736	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	345560000	172050000	173510000	175250000	70273000	104980000	170310000	101780000	68530000	0	0	0	0	0	0	25916	4927	24548	162091;162092;162093;162094;162095;162096	219425;219426;219427;219428;219429	219427			5	
IRDAYQMLK	1	Unmodified	1136.6012	0.60121417	5355	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.352	32.922	3	0.042017	26813	160511_QHF_FH_JSI9i_3	33.19	16.559			1.3853	1.1212	NaN	1	1	Median	1.3853	1.1212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36711000	21465000	15247000	36711000	21465000	15247000	0	0	0	0	0	0	0	0	0	25917	5355	24549	162097	219430	219430			1	
IRDAYTHPQFVTDVMK	1	Unmodified	1919.9564	0.95636763	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		55.541	54.376	3;4	2.1312E-05	44974	160511_QHF_FH_JSI9i_3	86.455	80.292			1.0468	1.1253	8.237	4	1	Median	1.49	1.2093	NaN	1	0	Median	0.98146	1.1253	6.9166	2	1	Median	1.063	1.015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	372370000	162630000	209740000	78228000	23610000	54618000	108280000	51937000	56339000	185870000	87082000	98784000	0	0	0	25918	1945	24550	162098;162099;162100;162101	219431;219432;219433;219434	219434			3	
IRDAYTHPQFVTDVMK	1	Oxidation (M)	1935.9513	0.95128225	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				44.616	43.016	4	0.018859	35153	160511_QHF_FH_JSI9i_3	39.685	33.562			1.643	1.3573	NaN	1	1	Median	1.643	1.3573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28459000	12553000	15905000	28459000	12553000	15905000	0	0	0	0	0	0	0	0	0	25919	1945	24550	162102	219435	219435		1616	1	
IRDEMVATEQER	0	Oxidation (M)	1491.6988	0.69875596	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		19.595	19.595	3	0.0050862	16407	160511_QHF_FH_JSI11i_3	60.345	43.134			1.0012	0.95504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0012	0.95504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81800000	44586000	37215000	0	0	0	0	0	0	81800000	44586000	37215000	0	0	0	25920	1103	24551	162103	219436	219436		741	1	
IRDEMVATEQER	0	Unmodified	1475.7038	0.70384134	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.42	5.54		7	2					3		2	4	6		22.055	19.243	2;3	6.0134E-06	16708	160511_QHF_FH_JSI10i_2	97.69	83.881			1.182	1.205	25.63	12	9	Median	1.6849	1.4824	50.679	2	1	Median	1.1717	1.4081	23.43	4	2	Median	1.182	1.1555	17.718	6	6	Median	NaN	NaN	NaN	0	0	Median	755890000	377330000	378560000	85274000	30246000	55029000	320080000	172960000	147120000	350540000	174120000	176410000	0	0	0	25921	1103	24551	162104;162105;162106;162107;162108;162109;162110;162111;162112;162113;162114;162115	219437;219438;219439;219440;219441;219442;219443;219444;219445;219446;219447;219448;219449	219447			13	
IRDEMVATEQERTPLQQK	1	Unmodified	2171.1005	0.10046569	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				36.367	34.91	3;4	0.0019771	28385	160511_QHF_FH_JSI9i_3	60.317	39.083			1.7867	1.4406	13.125	2	2	Median	1.7867	1.4406	13.125	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184830000	61441000	123390000	184830000	61441000	123390000	0	0	0	0	0	0	0	0	0	25922	1103	24552	162116;162117	219450;219451	219450			2	
IRDIDLK	1	Unmodified	871.51272	0.51271674	2377	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.973	22.718	3	0.0076583	18770	160511_QHF_FH_JSI10i_3	60.436	22.878			0.78565	0.91479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78565	0.91479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184090000	89979000	94109000	0	0	0	184090000	89979000	94109000	0	0	0	0	0	0	25923	2377	24553	162118	219452;219453	219453			2	
IRDIEEAIPR	0	Unmodified	1210.667	0.66698555	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	2	1	1	42.81	42.055	3	3.7584E-06	36961	160511_QHF_FH_JSI10i_2	96.103	73.186			0.79559	0.88531	29.448	5	2	Median	1.1586	0.99057	NaN	1	1	Median	0.9792	1.1619	38.444	2	0	Median	0.79559	0.7274	NaN	1	1	Median	0.74387	0.76799	NaN	1	0	Median	359220000	171910000	187300000	89253000	41174000	48080000	175620000	79719000	95898000	70368000	35895000	34473000	23976000	15123000	8853400	25924	2958	24554	162119;162120;162121;162122;162123	219454;219455;219456;219457	219457			3	
IRDLAQLK	1	Unmodified	955.58147	0.581465	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			28.078	26.769	3	0.00098799	22127	160511_QHF_FH_JSI10i_3	82.645	31.579			0.31202	0.35914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31202	0.35914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51658000	29882000	21777000	0	0	0	51658000	29882000	21777000	0	0	0	0	0	0	25925	1529	24555	162124	219458	219458			1	
IRDLLDVSK	1	Unmodified	1057.6132	0.61315906	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	3	3	2	42.513	41.68	2;3	2.1541E-05	35229	160511_QHF_FH_JSI10i_3	88.596	44.279			0.80831	0.77417	14.84	11	0	Median	0.83021	0.68304	18.213	3	0	Median	0.80831	0.95327	14.43	3	0	Median	0.80511	0.77417	17.246	3	0	Median	0.753	0.77322	1.2292	2	0	Median	1763000000	940660000	822300000	422590000	211660000	210930000	490520000	301310000	189210000	642130000	320300000	321830000	207720000	107390000	100330000	25926	1400	24556	162125;162126;162127;162128;162129;162130;162131;162132;162133;162134;162135	219459;219460;219461;219462;219463;219464;219465;219466;219467;219468;219469;219470;219471;219472;219473;219474;219475;219476	219466			18	
IRDLLYEQYAIV	0	Unmodified	1494.8082	0.80823006	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		83.95	83.346	2	0.035617	73255	160511_QHF_FH_JSI11i_2	53.683	45.878			1.0512	1.0415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0512	1.0415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29617000	15286000	14331000	0	0	0	0	0	0	29617000	15286000	14331000	0	0	0	25927	5214	24557	162136	219477	219477			1	
IRDLNDEINK	1	Unmodified	1228.6412	0.64116473	5408	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		24.588	24.588	2	0.00017906	20910	160511_QHF_FH_JSI11i_3	97.456	58.152			0.94786	0.87866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94786	0.87866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44573000	24337000	20236000	0	0	0	0	0	0	44573000	24337000	20236000	0	0	0	25928	5408	24558	162137	219478	219478			1	
IRDMITEASQTPK	1	Oxidation (M)	1504.7555	0.75554256	2514	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	32.681	32.634	3	5.9345E-07	28340	160511_QHF_FH_JSI11i_3	132.97	119.78			0.87851	0.87044	30.48	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.139	1.0798	NaN	1	0	Median	0.67759	0.70167	NaN	1	1	Median	87848000	48332000	39516000	0	0	0	0	0	0	65328000	33594000	31734000	22519000	14738000	7781800	25929	2514	24559	162138;162139	219479;219480;219481	219479		1984	3	
IRDMITEASQTPK	1	Unmodified	1488.7606	0.76062794	2514	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	33.111	32.613	2;3	2.9033E-05	27227	160511_QHF_FH_JSI10i_3	103.76	89.798			0.86608	0.98801	66.713	3	2	Median	NaN	NaN	NaN	0	0	Median	0.86608	0.98801	NaN	1	0	Median	2.6986	2.4561	NaN	1	1	Median	0.66539	0.66944	NaN	1	1	Median	308770000	164910000	143860000	0	0	0	155470000	89560000	65913000	32267000	12754000	19513000	121030000	62596000	58431000	25930	2514	24559	162140;162141;162142	219482;219483;219484	219483			3	
IRDPNQGGK	1	Unmodified	983.51484	0.514842	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	5.2	4.92		2	6					2		3	3	3	1	5.2752	3.11	2;3	1.8814E-06	2711	160511_QHF_FH_JSI10i_3	107.15	82.231			0.99617	1.0316	12.756	10	1	Median	1.3274	1.0409	9.6458	3	1	Plateau	0.95028	1.1045	17.784	3	0	Plateau	1.0328	1.0223	6.2516	3	0	Median	0.83544	0.94032	NaN	1	0	Median	5687000000	2676200000	3010700000	2251100000	943600000	1307500000	1793400000	926720000	866650000	1636300000	802220000	834080000	6212200	3694900	2517200	25931	334;2217	24560	162143;162144;162145;162146;162147;162148;162149;162150;162151;162152	219485;219486;219487;219488;219489;219490;219491;219492;219493;219494	219488			10	
IRDQLSAVASK	1	Unmodified	1186.667	0.66698555	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.932	22.612	2	0.040557	18247	160511_QHF_FH_JSI9i_3	52.79	30.659			1.2507	1.019	NaN	1	0	Median	1.2507	1.019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20211000	9839200	10372000	20211000	9839200	10372000	0	0	0	0	0	0	0	0	0	25932	5170	24561	162153	219495	219495			1	
IRDSAGQK	1	Unmodified	873.46683	0.46682918	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			8							4	4			0.60981	0.169	2;3	0.0028029	263	160511_QHF_FH_JSI10i_3	56.729	36.03			1.0472	1.1859	115.91	6	3	Median	2.2678	1.8269	108.1	2	1	Median	1.0357	1.1859	133.72	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	439530000	186860000	252670000	189950000	49661000	140290000	249580000	137200000	112380000	0	0	0	0	0	0	25933	1764	24562	162154;162155;162156;162157;162158;162159;162160;162161	219496;219497;219498;219499;219500;219501;219502;219503;219504;219505;219506;219507;219508	219496			13	
IRDVQHELPLDK	1	Unmodified	1461.794	0.79397698	5560	Q9Y375	NDUFAF1	Complex I intermediate-associated protein 30, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		66.107	65.113	3	0.019115	54737	160511_QHF_FH_JSI10i_3	28.764	11.822			0.81062	0.76244	12.278	3	0	Plateau	1.2305	0.97449	NaN	1	0	Median	0.74176	0.85522	NaN	1	0	Median	0.81062	0.76244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3715000000	1872700000	1842300000	967580000	352310000	615270000	992800000	592240000	400570000	1754600000	928150000	826420000	0	0	0	25934	5560	24563	162162;162163;162164	219509	219509			1	
IRDVTFLFNEEGK	1	Unmodified	1566.8042	0.80420731	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		66.646	65.652	3	0.00010177	53928	160511_QHF_FH_JSI9i_3	77.894	71.208			1.3401	0.97881	33.878	3	1	Plateau	0.90403	0.73915	NaN	1	0	Median	0.62357	0.70494	NaN	1	1	Median	1.3782	1.2962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	158650000	82754000	75896000	42936000	21529000	21407000	39119000	20346000	18772000	76595000	40879000	35716000	0	0	0	25935	2947	24564	162165;162166;162167	219510;219511;219512	219512			3	
IREDLPNLESSEETEQINK	1	Unmodified	2243.0917	0.091734718	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.06	5	5	7					1		4	5	6	3	54.638	53.192	2;3	1.1496E-54	47188	160511_QHF_FH_JSI11i_3	174.02	158.76			0.90103	0.88374	13.618	14	2	Median	1.0754	0.90813	14.54	2	1	Median	0.8389	1.027	22.357	4	1	Linear	0.90387	0.88764	5.9412	5	0	Median	0.90875	0.91371	4.3768	3	0	Median	3615900000	1887900000	1728000000	564560000	270210000	294350000	1116100000	646740000	469330000	1372800000	669010000	703790000	562480000	301960000	260520000	25936	4212	24565	162168;162169;162170;162171;162172;162173;162174;162175;162176;162177;162178;162179;162180;162181;162182;162183;162184;162185	219513;219514;219515;219516;219517;219518;219519;219520;219521;219522;219523;219524;219525;219526;219527;219528;219529;219530;219531;219532;219533;219534;219535;219536;219537;219538;219539;219540;219541;219542;219543;219544;219545;219546	219514			34	
IREDPLFIIR	0	Unmodified	1270.7398	0.73975656	5105	Q9NXE8	CWC25	Pre-mRNA-splicing factor CWC25 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				67.614	66.124	3	0.0031172	54278	160511_QHF_FH_JSI9i_3	51.092	40.167			0.75854	0.66099	NaN	1	1	Median	0.75854	0.66099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5027800	2904000	2123800	5027800	2904000	2123800	0	0	0	0	0	0	0	0	0	25937	5105	24566	162186	219547	219547			1	
IREEFPDR	0	Unmodified	1060.5302	0.53015772	811;4440	P04350;Q9BUF5	TUBB4A;TUBB6	Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.62	0.484		3	5							2	3	3		20.675	19.962	2;3	0.0013466	16326	160511_QHF_FH_JSI10i_3	74.464	58.262			1.0083	1.0038	13.333	8	0	Median	1.5006	1.2496	14.168	2	0	Median	0.84629	0.97826	4.192	3	0	Median	1.0201	0.94972	10.558	3	0	Median	NaN	NaN	NaN	0	0	Median	1267000000	595530000	671480000	387420000	143460000	243960000	665620000	343470000	322150000	213980000	108600000	105380000	0	0	0	25938	811;4440	24567	162187;162188;162189;162190;162191;162192;162193;162194	219548;219549;219550;219551;219552;219553	219550			6	
IREESGAR	0	Unmodified	916.47264	0.47264284	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				4.3229	3.9292	3	0.0047866	1874	160511_QHF_FH_JSI9i_2	53.775	3.6482			1.0306	0.86792	NaN	1	1	Median	1.0306	0.86792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75543000	34540000	41003000	75543000	34540000	41003000	0	0	0	0	0	0	0	0	0	25939	2656	24568	162195	219554	219554			1	
IREESNTK	1	Unmodified	975.49852	0.49852324	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	3	1		1.5915	1.2621	3	0.0009635	12	160511_QHF_FH_JSI11i_3	74.464	53.092			0.72522	0.7353	127.96	6	3	Median	1.5752	1.319	136.34	2	1	Median	0.87197	1.0749	125.03	3	2	Median	0.18372	0.17005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	359800000	191170000	168630000	113830000	45127000	68706000	192470000	104410000	88059000	53492000	41630000	11862000	0	0	0	25940	2147	24569	162196;162197;162198;162199;162200;162201	219555;219556;219557;219558;219559;219560;219561	219555			7	
IREEYPDR	0	Unmodified	1076.5251	0.52507234	2075;872;2477;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.44	3	8	8				2	7	5	6	9	9	9	14.087	10.136	2;3	1.5558E-21	8675	160511_QHF_FH_JSI11i_3	195.88	145.85			0.89766	0.95753	11.07	33	0	Median	1.2179	1.0399	5.6254	6	0	Median	0.7537	0.89775	13.192	9	0	Median	0.99892	0.95753	4.2026	9	0	Median	0.88983	0.92811	11.344	9	0	Median	33727000000	16928000000	16799000000	6433600000	2924600000	3509000000	13223000000	6985400000	6238100000	10665000000	5117400000	5547300000	3405500000	1900700000	1504700000	25941	872;2075;2477;2824	24570	162202;162203;162204;162205;162206;162207;162208;162209;162210;162211;162212;162213;162214;162215;162216;162217;162218;162219;162220;162221;162222;162223;162224;162225;162226;162227;162228;162229;162230;162231;162232;162233;162234	219562;219563;219564;219565;219566;219567;219568;219569;219570;219571;219572;219573;219574;219575;219576;219577;219578;219579;219580;219581;219582;219583;219584;219585;219586;219587;219588;219589;219590;219591;219592;219593;219594;219595;219596;219597;219598;219599;219600;219601;219602;219603;219604;219605;219606;219607;219608;219609;219610;219611	219562			50	
IREFDSSTLNESVR	0	Unmodified	1651.8166	0.81656291	4041	Q96EC8	YIPF6	Protein YIPF6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.03	41.47	3	0.0059149	33771	160511_QHF_FH_JSI9i_3	43.69	31.922			1.7841	1.4288	NaN	1	1	Median	1.7841	1.4288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95563000	32402000	63161000	95563000	32402000	63161000	0	0	0	0	0	0	0	0	0	25942	4041	24571	162235	219612	219612			1	
IREFIQDFQK	1	Unmodified	1322.6983	0.69828568	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.939	47.939	3	0.019645	42370	160511_QHF_FH_JSI11i_3	41.164	25.962			1.7489	1.694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7489	1.694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64075000	20620000	43455000	0	0	0	0	0	0	64075000	20620000	43455000	0	0	0	25943	2591	24572	162236	219613	219613			1	
IREGMAALQSDPWQQELYR	0	Oxidation (M)	2306.1114	0.11136472	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			62.739	61.227	3	8.1064E-05	51301	160511_QHF_FH_JSI10i_3	71.376	62.959			0.84014	0.82051	11.014	2	1	Median	1.0579	0.88696	NaN	1	1	Median	0.66722	0.75903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39064000	19041000	20023000	15591000	6527100	9064100	23473000	12514000	10959000	0	0	0	0	0	0	25944	1675	24573	162237;162238	219614;219615	219614		1364	2	
IREGMAALQSDPWQQELYR	0	Unmodified	2290.1165	0.1164501	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				73.148	71.676	3	2.3419E-05	58571	160511_QHF_FH_JSI9i_3	77.391	68.891			1.4143	1.1722	26.194	2	1	Median	1.4143	1.1722	26.194	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81844000	31413000	50431000	81844000	31413000	50431000	0	0	0	0	0	0	0	0	0	25945	1675	24573	162239;162240	219616;219617;219618;219619	219616			4	
IREGQVEVLK	1	Unmodified	1169.6768	0.67682195	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			29.033	27.707	2;3	0.00022686	22947	160511_QHF_FH_JSI10i_3	71.555	52.312			1.038	1.1966	6.1749	2	0	Median	NaN	NaN	NaN	0	0	Median	1.038	1.1966	6.1749	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	419080000	219550000	199530000	0	0	0	419080000	219550000	199530000	0	0	0	0	0	0	25946	3085	24574	162241;162242	219620;219621;219622	219621			3	
IREHLEK	1	Unmodified	923.51886	0.51886475	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		6.6625	6.3047	3	0.0075313	4292	160511_QHF_FH_JSI10i_3	60.91	17.787			0.91334	0.75668	18.484	3	0	Plateau	0.91334	0.75668	NaN	1	0	Median	0.46253	0.53765	NaN	1	0	Median	0.7659	0.72066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5552900000	2529900000	3023000000	2746400000	942180000	1804200000	1145300000	641530000	503810000	1661200000	946170000	714990000	0	0	0	25947	842	24575	162243;162244;162245	219623;219624;219625;219626;219627;219628;219629;219630	219625			8	
IRELESQISELQEDLESER	0	Unmodified	2302.1288	0.12884851	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.27	0.445		8	3							4	6	1		84.54	83.868	3	3.2852E-11	74293	160511_QHF_FH_JSI10i_2	131.67	118.61			1.0897	1.0021	69.199	8	5	Median	1.174	1.0021	61.304	4	3	Median	0.88329	1.0493	81.278	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	539290000	246850000	292450000	335890000	156130000	179760000	203400000	90715000	112690000	0	0	0	0	0	0	25948	1436	24576	162246;162247;162248;162249;162250;162251;162252;162253;162254;162255;162256	219631;219632;219633;219634;219635;219636;219637;219638;219639;219640;219641;219642	219641			12	
IRELGSLPQEAFEK	1	Unmodified	1615.857	0.85697116	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		57.137	56.138	3	0.0021351	46895	160511_QHF_FH_JSI10i_3	61.409	54.972			0.99191	0.79548	52.134	5	5	Median	0.73564	0.60947	37.668	2	2	Median	0.79563	0.94657	38.416	2	2	Median	1.9265	1.8108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	889990000	482800000	407190000	337830000	204140000	133700000	338090000	198430000	139660000	214070000	80232000	133840000	0	0	0	25949	5479	24577	162257;162258;162259;162260;162261	219643;219644;219645;219646;219647	219644			5	
IRELTAVVQK	1	Unmodified	1155.6976	0.69755739	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.65		6	15					2	5	11	9	5	3	34.97	32.031	2;3	3.7245E-05	27629	160511_QHF_FH_JSI9i_2	99.283	70.325			0.94257	1.0172	173.5	28	28	Median	0.96115	0.82712	151.83	11	11	Median	0.90838	1.1295	174.72	9	9	Median	0.1557	0.14631	248.53	5	5	Median	1.3151	1.4252	76.512	3	3	Median	11089000000	5808000000	5280700000	3686800000	1733500000	1953300000	3715200000	1974800000	1740300000	3314500000	1900400000	1414100000	372250000	199240000	173010000	25950	1227	24578	162262;162263;162264;162265;162266;162267;162268;162269;162270;162271;162272;162273;162274;162275;162276;162277;162278;162279;162280;162281;162282;162283;162284;162285;162286;162287;162288;162289	219648;219649;219650;219651;219652;219653;219654;219655;219656;219657;219658;219659;219660;219661;219662;219663;219664;219665;219666;219667;219668;219669;219670;219671;219672;219673;219674;219675;219676	219664			29	
IREPALLSK	1	Unmodified	1025.6233	0.62332982	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		35.096	34.135	3	0.012072	28527	160511_QHF_FH_JSI10i_3	40.496	18.41			0.95348	0.97298	3.698	3	0	Plateau	1.1602	0.97298	NaN	1	0	Median	0.81848	0.94039	NaN	1	0	Median	0.95348	0.90368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	87026000	42119000	44907000	33897000	15320000	18576000	28526000	14175000	14351000	24604000	12624000	11980000	0	0	0	25951	2540	24579	162290;162291;162292	219677	219677			1	
IREPLTAQQLETTTER	0	Unmodified	1884.9905	0.99050453	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			47.314	45.726	3	4.5227E-06	37498	160511_QHF_FH_JSI9i_3	120.77	111.35			1.1653	1.1231	10.403	2	1	Median	1.2822	1.0435	NaN	1	0	Median	1.0592	1.2089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117620000	47462000	70158000	81197000	29704000	51493000	36422000	17758000	18665000	0	0	0	0	0	0	25952	3094	24580	162293;162294;162295	219678;219679;219680;219681	219681			4	
IREQNLQDIK	1	Unmodified	1255.6884	0.68844927	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			24.668	23.393	3	0.015253	19281	160511_QHF_FH_JSI10i_3	43.958	20.489			1.079	1.2259	47.543	2	2	Median	NaN	NaN	NaN	0	0	Median	1.079	1.2259	47.543	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78879000	41655000	37224000	0	0	0	78879000	41655000	37224000	0	0	0	0	0	0	25953	1440	24581	162296;162297	219682;219683	219682			2	
IRETTDFK	1	Unmodified	1008.524	0.52400971	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	15.161	14.612	2;3	0.019591	11776	160511_QHF_FH_JSI10i_3	34.721	19.059			1.1335	1.0987	24.26	7	1	Median	1.6225	1.3279	30.675	2	0	Median	1.1743	1.3426	4.0373	2	0	Median	0.88871	0.81755	NaN	1	1	Median	0.97903	1.0056	12.516	2	0	Median	1726900000	841870000	885080000	92735000	28349000	64385000	504230000	241110000	263120000	743570000	364010000	379560000	386410000	208400000	178010000	25954	512	24582	162298;162299;162300;162301;162302;162303;162304	219684;219685;219686;219687;219688	219687			5	
IREVAQTADAR	0	Unmodified	1228.6524	0.65239812	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.955	10.244	3	0.0033809	7752	160511_QHF_FH_JSI9i_3	43.382	19.532			1.1462	0.92932	NaN	1	0	Median	1.1462	0.92932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36092000	11509000	24582000	36092000	11509000	24582000	0	0	0	0	0	0	0	0	0	25955	1152	24583	162305	219689	219689			1	
IREYFGEFGEIEAIELPMDPK	1	Unmodified	2482.209	0.20901308	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									3		2		1	90.198	83.237	3	0.00015011	47699	160513_QHF_FH_JSI10Kac_6	107.74	79.236			0.7738	0.92458	18.606	3	3	Median	NaN	NaN	NaN	0	0	Median	0.83631	1.0021	11.392	2	2	Median	NaN	NaN	NaN	0	0	Median	0.68874	0.74949	NaN	1	1	Median	366790000	199970000	166820000	0	0	0	306610000	163980000	142630000	0	0	0	60177000	35992000	24185000	25956	4308	24584	162306;162307;162308	219690;219691;219692	219692			3	
IREYFGGFGEVESIELPMDNK	1	Unmodified	2429.1573	0.15731186	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			5								2	3		94.022	93.793	3	3.5488E-10	83020	160511_QHF_FH_JSI11i_3	111.66	102.84			1.0585	1.0766	10.167	4	3	Median	NaN	NaN	NaN	0	0	Median	0.92015	1.1189	NaN	1	1	Median	1.1152	1.0359	11.609	3	2	Median	NaN	NaN	NaN	0	0	Median	133320000	62080000	71238000	0	0	0	6193000	2244400	3948500	127120000	59836000	67289000	0	0	0	25957	2488	24585	162309;162310;162311;162312;162313	219693;219694;219695;219696;219697;219698	219694			6	
IREYKSK	2	Acetyl (K)	964.53418	0.53418046	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	1	0	0	2		By MS/MS		By MS/MS	16	0									2		1		1	10.973	4.0283	3	0.058272	4148	160513_QHF_FH_JSI10Kac_6	51.854	19.014			0.81424	0.92657	12.586	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83542	1.0128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7936	0.84767	NaN	1	0	Median	27928000	14705000	13223000	0	0	0	21242000	10472000	10770000	0	0	0	6685500	4232400	2453000	25958	1149	24586	162314;162315	219699	219699			1	
IRFEVPK	1	Unmodified	887.52289	0.52288749	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		38.964	38.964	3	0.012514	32137	160511_QHF_FH_JSI9i_3	44.447	24.97			2.9009	2.7869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9009	2.7869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9992400	2937600	7054800	0	0	0	0	0	0	9992400	2937600	7054800	0	0	0	25959	4219	24587	162316;162317;162318	219700;219701;219702	219702			3	
IRFPGFEPLTPWILDLLGHYAVMNNPTR	0	Oxidation (M)	3282.7012	0.70120957	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	1	1	By MS/MS		By MS/MS		16	0									2	1		1		99.422	90.006	3;4	1.3169E-13	51808	160513_QHF_FH_JSI9Kac_6	88.595	82.434			1.5706	1.4989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5706	1.4989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242710000	110170000	132540000	0	0	0	0	0	0	242710000	110170000	132540000	0	0	0	25960	2324	24588	162319;162320	219703;219704	219704		1915	2	
IRFPGFEPLTPWILDLLGHYAVMNNPTR	0	Unmodified	3266.7063	0.70629495	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			99.408	92.543	3;4	2.8627E-116	52202	160513_QHF_FH_JSI9Kac_6	239.39	222.17			0.99848	1.0891	0.34454	3	1	Median	1.285	1.0891	NaN	1	0	Median	0.95437	1.0867	0.45267	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7990300000	4930400000	3059800000	459720000	186420000	273300000	7530600000	4744000000	2786500000	0	0	0	0	0	0	25961	2324	24588	162321;162322;162323	219705;219706;219707	219705			3	
IRFTLPPLVFAAYQLAFR	0	Unmodified	2122.2092	0.20915192	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.005	93.284	3	9.7871E-12	54611	160513_QHF_FH_JSI10Kac_6	127.78	118.96			1.0319	1.2341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0319	1.2341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	569850000	284720000	285130000	0	0	0	569850000	284720000	285130000	0	0	0	0	0	0	25962	4212	24589	162324	219708;219709	219708			2	
IRGPEESQPPQLYAADEEEAPGTRDPTR	0	Unmodified	3108.4748	0.47483427	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	2	By MS/MS				2.5	0.5		1	1							2				48.466	47.133	4	3.5708E-10	38468	160511_QHF_FH_JSI9i_3	74.748	74.103			1.4224	1.1968	1.7423	2	1	Median	1.4224	1.1968	1.7423	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61734000	21437000	40297000	61734000	21437000	40297000	0	0	0	0	0	0	0	0	0	25963	2921	24590	162325;162326	219710;219711;219712;219713;219714	219710			5	
IRIDAMHGVVGPYVK	1	Unmodified	1653.9025	0.90248157	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.27			12						7	4	4	5	6	64.143	60.37	2;3;4	2.6745E-05	53488	160511_QHF_FH_JSI11i_3	101.36	101.36			0.92488	0.94767	13.613	19	3	Median	1.1927	0.99146	12.418	4	0	Median	0.86863	1.0002	10.846	4	0	Median	1.0633	1.0259	7.2312	5	1	Median	0.81173	0.81324	8.8734	6	2	Median	6511800000	3277700000	3234100000	959380000	440200000	519170000	1141000000	606010000	534990000	2187900000	1093900000	1093900000	2223500000	1137500000	1086000000	25964	1460	24591	162327;162328;162329;162330;162331;162332;162333;162334;162335;162336;162337;162338;162339;162340;162341;162342;162343;162344;162345	219715;219716;219717;219718;219719;219720;219721;219722;219723;219724;219725;219726;219727;219728;219729;219730;219731;219732;219733;219734;219735;219736;219737;219738;219739;219740;219741;219742;219743;219744;219745;219746;219747;219748;219749;219750;219751;219752	219717			38	
IRIDAMHGVVGPYVK	1	Oxidation (M)	1669.8974	0.89739619	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		48.407	48.407	3	0.0047808	42742	160511_QHF_FH_JSI11i_3	60.549	48.935			1.1265	1.0455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1265	1.0455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49304000	22125000	27179000	0	0	0	0	0	0	49304000	22125000	27179000	0	0	0	25965	1460	24591	162346	219753	219753		1129	1	
IRIDSLSAQLSQLQK	1	Unmodified	1698.9628	0.96283322	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.42		2	9						3	6	3	3	2	76.618	74.377	2;3	4.4057E-29	63141	160511_QHF_FH_JSI10i_3	176.89	133.38			0.98378	0.88718	14.126	12	2	Median	1.0177	0.83259	20.994	5	2	Median	0.7652	0.93079	2.8415	3	0	Plateau	1.037	0.96916	6.7915	3	0	Median	0.75815	0.78546	NaN	1	0	Median	3525500000	1628400000	1897100000	1394800000	658440000	736340000	987580000	452330000	535250000	1029100000	456360000	572780000	113980000	61283000	52696000	25966	791	24592	162347;162348;162349;162350;162351;162352;162353;162354;162355;162356;162357;162358;162359;162360	219754;219755;219756;219757;219758;219759;219760;219761;219762;219763;219764;219765;219766;219767;219768;219769;219770;219771;219772;219773;219774;219775;219776;219777;219778;219779;219780;219781;219782	219764			29	
IRLDTEEQLK	1	Unmodified	1243.6772	0.67721588	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		35.582	35.582	2	0.00069905	31269	160511_QHF_FH_JSI11i_3	98.943	43.393			1.0239	0.95047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0239	0.95047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51005000	27270000	23735000	0	0	0	0	0	0	51005000	27270000	23735000	0	0	0	25967	3709	24593	162361;162362	219783;219784	219784			2	
IRLDTETEGVPSTAIR	0	Unmodified	1756.9319	0.93192702	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		2	6							1	4	2	1	53.569	52.733	2;3	1.2422E-05	46829	160511_QHF_FH_JSI11i_3	86.772	74.856			0.99753	1.116	9.4096	7	1	Median	1.5328	1.265	NaN	1	0	Median	0.90292	1.0607	4.5298	3	0	Plateau	1.0909	1.0121	12.246	2	1	Median	1.0781	1.1221	NaN	1	0	Median	563110000	283590000	279520000	68771000	30289000	38482000	280480000	145690000	134790000	173300000	87203000	86095000	40559000	20409000	20150000	25968	1252	24594	162363;162364;162365;162366;162367;162368;162369;162370	219785;219786;219787;219788;219789;219790;219791;219792;219793;219794	219786			10	
IRLEETLEQLAK	1	Unmodified	1441.814	0.81404372	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	2	3	73.307	72.819	2;3	1.8236E-05	64700	160511_QHF_FH_JSI11i_3	101.53	91.733			1.2306	1.0298	12.945	8	3	Linear	0.91043	0.77892	NaN	1	0	Median	0.85433	1.0225	6.491	2	1	Median	1.1385	1.068	10.651	2	0	Median	1.0897	1.1314	9.6928	3	2	Plateau	445480000	211880000	233610000	24742000	13241000	11501000	38206000	21942000	16264000	198250000	87231000	111020000	184290000	89462000	94824000	25969	1201	24595	162371;162372;162373;162374;162375;162376;162377;162378	219795;219796;219797;219798;219799;219800;219801;219802;219803;219804;219805	219795			11	
IRLENEIQTYR	0	Unmodified	1433.7627	0.76267685	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	By MS/MS				3	0			1							1				44.669	43.069	3	2.419E-05	35181	160511_QHF_FH_JSI9i_3	78.903	63.358		+	0.62772	0.50948	NaN	1	0	Median	0.62772	0.50948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78259000	50285000	27975000	78259000	50285000	27975000	0	0	0	0	0	0	0	0	0	25970	56	24596	162379	219806	219806			1	
IRLESEEEGVPSTAIR	0	Unmodified	1784.9268	0.92684164	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	6.2		7	3						4	3	4	5	2	50.894	47.655	2;3	3.1469E-06	42096	160511_QHF_FH_JSI10i_2	132.47	116.22			0.93435	1.21	13.704	14	0	Linear	1.3961	1.1535	19.807	3	0	Plateau	1.05	1.279	21.481	4	0	Linear	1.0378	0.98944	6.7397	5	0	Median	0.8634	0.91998	2.7906	2	0	Median	2339300000	1119800000	1219600000	800640000	368890000	431760000	763400000	375680000	387720000	744410000	359910000	384500000	30873000	15299000	15574000	25971	850	24597	162380;162381;162382;162383;162384;162385;162386;162387;162388;162389;162390;162391;162392;162393	219807;219808;219809;219810;219811;219812;219813;219814;219815;219816;219817;219818	219817			12	
IRLPYELQK	1	Unmodified	1158.6761	0.67609367	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	52.76	51.916	3	3.3165E-07	45729	160511_QHF_FH_JSI11i_3	136.63	107.16			0.83681	0.9125	19.167	4	0	Linear	1.0333	0.82919	NaN	1	0	Median	0.71608	0.81388	NaN	1	0	Median	0.97789	0.92476	NaN	1	0	Median	0.57592	0.59241	NaN	1	0	Median	719710000	395840000	323860000	220590000	105190000	115400000	165920000	86498000	79420000	283030000	170310000	112720000	50171000	33848000	16322000	25972	723	24598	162394;162395;162396;162397	219819;219820	219819			2	
IRLSPEPWTPETGLVTDAFK	1	Unmodified	2256.179	0.17903358	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		95.502	94.912	3	2.2565E-05	78993	160511_QHF_FH_JSI10i_3	69.122	65.628			1.2846	1.2197	4.6498	3	0	Plateau	1.3117	1.1114	NaN	1	0	Median	1.0001	1.1631	NaN	1	0	Median	1.2846	1.2197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49867000	21089000	28778000	10264000	4607000	5656900	14728000	7864000	6863900	24875000	8617600	16257000	0	0	0	25973	707	24599	162398;162399;162400	219821;219822;219823	219823			3	
IRMEPDETVK	1	Unmodified	1216.6122	0.61217279	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.2		3	7					3		3	4	3	3	27.454	24.717	2;3	1.0949E-06	20914	160511_QHF_FH_JSI11i_3	119.22	73.544			1.0089	1.1382	46.379	13	1	Median	0.83708	0.68788	55.234	3	0	Median	0.91081	1.0757	12.16	4	1	Median	1.3344	1.2646	47.622	3	0	Plateau	0.77314	0.79997	34.428	3	0	Median	2070300000	1028200000	1042100000	303030000	157730000	145310000	336640000	186100000	150540000	846350000	381740000	464610000	584250000	302630000	281620000	25974	1830	24600	162401;162402;162403;162404;162405;162406;162407;162408;162409;162410;162411;162412;162413	219824;219825;219826;219827;219828;219829;219830;219831;219832;219833;219834;219835;219836;219837;219838;219839	219827			16	
IRMEPWDYPAK	1	Unmodified	1404.686	0.68600643	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	52.294	51.984	2;3	0.00014674	44396	160511_QHF_FH_JSI12i_3	81.431	65.892			0.97748	1.0786	19.509	3	2	Median	NaN	NaN	NaN	0	0	Median	0.97748	1.1911	NaN	1	1	Median	0.97671	0.93903	19.599	2	1	Median	NaN	NaN	NaN	0	0	Median	358580000	164520000	194060000	0	0	0	43600000	16333000	27267000	314980000	148190000	166790000	0	0	0	25975	2113	24601	162414;162415;162416;162417	219840;219841;219842;219843	219843			4	
IRPDNELFEVR	0	Unmodified	1386.7256	0.72556306	3890	Q92805	GOLGA1	Golgin subfamily A member 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			52.832	51.27	3	0.010903	42860	160511_QHF_FH_JSI10i_3	35.204	28.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25976	3890	24602	162418	219844	219844			1	
IRPFAVAAVLR	0	Unmodified	1211.7503	0.75026167	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				72.607	64.021	3	0.0064622	34069	160513_QHF_FH_JSI9Kac_6	46.73	39.467			1.4995	1.2747	NaN	1	1	Median	1.4995	1.2747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8297900	4703000	3594900	8297900	4703000	3594900	0	0	0	0	0	0	0	0	0	25977	4982	24603	162419	219845	219845			1	
IRPGEQEQYESTIGFK	1	Unmodified	1880.9268	0.92684164	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			48.458	46.892	3	0.022613	39169	160511_QHF_FH_JSI10i_3	40.614	35.428			0.87989	1.0162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87989	1.0162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66322000	29081000	37241000	0	0	0	66322000	29081000	37241000	0	0	0	0	0	0	25978	988	24604	162420	219846	219846			1	
IRPGEYEQFESTIGFK	1	Unmodified	1899.9367	0.93667805	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			70.006	69.21	3	0.015237	61493	160511_QHF_FH_JSI10i_2	44.567	33.909			1.3109	1.6038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3109	1.6038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41897000	17546000	24350000	0	0	0	41897000	17546000	24350000	0	0	0	0	0	0	25979	4719	24605	162421	219847	219847			1	
IRPLEVPTTAGPASASTPTDGAK	1	Unmodified	2236.1699	0.16992546	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			53.498	51.928	3	6.1675E-11	42500	160511_QHF_FH_JSI9i_3	101.94	97.183			0.91582	0.88312	2.9403	2	1	Median	1.0917	0.90167	NaN	1	0	Median	0.76829	0.86495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51053000	24507000	26546000	28071000	12052000	16018000	22982000	12455000	10527000	0	0	0	0	0	0	25980	5403	24606	162422;162423;162424;162425	219848;219849;219850;219851;219852	219851			5	
IRPLTEAEK	1	Unmodified	1055.5975	0.597509	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				18.19	17.029	3	0.0042712	13652	160511_QHF_FH_JSI9i_3	48.981	33.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25981	3748	24607	162426	219853	219853			1	
IRPTVQEDGGDVIYK	1	Unmodified	1688.8733	0.87334951	5425	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		41.134	40.373	3	0.00031797	33757	160511_QHF_FH_JSI10i_3	80.738	68.573			0.83904	0.8703	44.605	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0146	1.193	NaN	1	1	Median	0.69387	0.63488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105680000	60085000	45596000	0	0	0	54056000	25618000	28437000	51625000	34466000	17159000	0	0	0	25982	5425	24608	162427;162428	219854;219855	219855			2	
IRPVIEQTFPFSK	1	Unmodified	1560.8664	0.86641364	3802	Q8WWV3	RTN4IP1	Reticulon-4-interacting protein 1, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			70.238	68.774	3	0.002732	57621	160511_QHF_FH_JSI10i_3	50.108	44.098			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25983	3802	24609	162429	219856	219856			1	
IRPVPEYQK	1	Unmodified	1128.6291	0.62914348	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			22.392	21.141	3	2.4517E-05	16983	160511_QHF_FH_JSI9i_3	96.143	76.153			0.75586	0.74193	17.4	2	0	Median	0.82761	0.65604	NaN	1	0	Median	0.69033	0.83907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251210000	126300000	124910000	168550000	80308000	88241000	82660000	45993000	36667000	0	0	0	0	0	0	25984	93	24610	162430;162431	219857;219858;219859;219860	219859			4	
IRQEDENFNSLLQNGDILNSSTEEK	1	Unmodified	2892.3737	0.37372324	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								1	3		77.515	77.271	3	2.2928E-08	68845	160511_QHF_FH_JSI10i_2	78.758	72.182			1.2072	1.2867	31.893	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2072	1.4738	NaN	1	1	Median	1.074	1.0163	33.364	2	2	Median	NaN	NaN	NaN	0	0	Median	55163000	27709000	27455000	0	0	0	14671000	9753600	4917100	40492000	17955000	22537000	0	0	0	25985	4226	24611	162432;162433;162434;162435	219861;219862;219863;219864	219864			4	
IRQEIQELK	1	Unmodified	1155.6612	0.66117189	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		21.437	21.437	3	0.025897	18080	160511_QHF_FH_JSI11i_3	38.567	15.195			0.14903	0.14197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14903	0.14197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127430000	109860000	17573000	0	0	0	0	0	0	127430000	109860000	17573000	0	0	0	25986	4668	24612	162436	219865	219865			1	
IRQELPFMATENIIMAMVK	1	Unmodified	2234.1625	0.16253736	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	1	By MS/MS		By matching		3	0			2							1		1		102.46	102.37	3	2.5869E-05	83454	160511_QHF_FH_JSI9i_3	76.155	66.593			0.88726	0.78518	6.2449	2	0	Median	0.91011	0.75126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86499	0.82063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	225360000	113680000	111680000	21791000	10254000	11536000	0	0	0	203570000	103430000	100140000	0	0	0	25987	1359	24613	162437;162438	219866;219867	219866			2	
IRQNEINNPK	1	Unmodified	1224.6575	0.65748349	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1	By MS/MS				2.67	0.471		1	2							3				10.352	9.7509	2;3	0.00044245	7221	160511_QHF_FH_JSI9i_3	67.334	57.679			1.152	0.92441	16.141	3	1	Plateau	1.152	0.92441	16.141	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	377400000	180570000	196830000	377400000	180570000	196830000	0	0	0	0	0	0	0	0	0	25988	2676	24614	162439;162440;162441	219868;219869;219870;219871	219868			4	
IRQQEIEEK	1	Unmodified	1171.6197	0.619701	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				10.764	10.202	2	0.0086456	7983	160511_QHF_FH_JSI9i_2	69.812	22.614			0.6304	0.53797	NaN	1	0	Median	0.6304	0.53797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23526000	13615000	9910500	23526000	13615000	9910500	0	0	0	0	0	0	0	0	0	25989	5065	24615	162442	219872	219872			1	
IRRDEEGNEIK	1	Unmodified	1357.695	0.69499121	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				8.2317	7.64	3	0.00050897	5416	160511_QHF_FH_JSI9i_3	70.488	50.727			1.2532	1.0326	NaN	1	0	Median	1.2532	1.0326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41935000	19789000	22146000	41935000	19789000	22146000	0	0	0	0	0	0	0	0	0	25990	3778	24616	162443	219873;219874	219874			2	
IRTDAGFTLR	0	Unmodified	1148.6302	0.63020611	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				46.62	37.424	3	0.03893	19960	160513_QHF_FH_JSI9Kac_6	36.303	27.345			0.70889	0.62221	NaN	1	1	Median	0.70889	0.62221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2983400	1432600	1550800	2983400	1432600	1550800	0	0	0	0	0	0	0	0	0	25991	1139	24617	162444	219875	219875			1	
IRTIELDGK	1	Unmodified	1043.5975	0.597509	2020;4642;1927;3909	Q9H0U4;P61006;P62820;Q92930	RAB1B;RAB8A;RAB1A;RAB8B	Ras-related protein Rab-1B;Ras-related protein Rab-8A;Ras-related protein Rab-1A;Ras-related protein Rab-8B	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		30.423	29.322	2;3	0.00048113	24419	160511_QHF_FH_JSI10i_3	60.305	35.467			1.4374	1.6022	34.109	5	0	Median	1.9945	1.6048	5.4647	2	0	Median	1.4035	1.6241	1.9143	2	0	Median	0.8145	0.75514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	676870000	261540000	415330000	210830000	70086000	140740000	350780000	148420000	202360000	115260000	43034000	72224000	0	0	0	25992	4642;1927;2020;3909	24618	162445;162446;162447;162448;162449	219876;219877;219878	219877			3	
IRTTETQVLVASAQK	1	Unmodified	1643.9206	0.92063405	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			38.661	37.178	3	0.00062269	30304	160511_QHF_FH_JSI9i_3	72.898	64.077			1.2904	1.2688	7.011	2	2	Median	1.6258	1.3333	NaN	1	1	Median	1.0243	1.2075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68888000	27357000	41531000	42688000	15048000	27640000	26199000	12309000	13890000	0	0	0	0	0	0	25993	1012	24619	162450;162451	219879;219880	219880			2	
IRVDAQPVK	1	Unmodified	1024.6029	0.60292873	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	21.484	20.777	2;3	0.0025682	16846	160511_QHF_FH_JSI12i_3	48.44	31.664			0.83886	0.78265	25.199	7	1	Median	1.0265	0.84459	54.358	2	0	Median	0.87052	1.0096	4.9283	2	0	Median	0.83886	0.7801	NaN	1	1	Median	0.76196	0.77549	1.3004	2	0	Median	1160700000	568020000	592640000	109780000	43051000	66732000	224940000	112480000	112450000	388160000	201670000	186500000	437780000	210810000	226960000	25994	1654	24620	162452;162453;162454;162455;162456;162457;162458;162459	219881;219882;219883;219884;219885;219886;219887;219888;219889;219890;219891	219890			11	
IRVDFSITK	1	Unmodified	1077.6182	0.61824444	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			6						3	2	3	2	2	56.787	53.722	2;3	9.9363E-06	44188	160511_QHF_FH_JSI9i_3	107.83	86.367			0.96957	1.0238	25.521	8	1	Median	0.99307	0.80374	6.4059	2	0	Median	0.96264	1.1104	6.4205	3	1	Plateau	1.3501	1.2944	12.423	2	0	Median	0.64535	0.644	NaN	1	0	Median	511270000	261110000	250160000	167510000	89211000	78299000	171920000	90058000	81859000	110310000	46526000	63781000	61532000	35310000	26222000	25995	2044	24621	162460;162461;162462;162463;162464;162465;162466;162467;162468	219892;219893;219894;219895;219896;219897;219898;219899;219900;219901;219902;219903;219904;219905;219906;219907;219908	219901			17	
IRVDVADQAQDK	1	Unmodified	1356.6997	0.69974224	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.05	1	7	8					4		5	5	5	5	30.317	27.738	2;3	4.0702E-11	23055	160511_QHF_FH_JSI10i_3	126.95	109.14			0.92484	0.9703	20.435	20	6	Median	0.82835	0.69126	21.185	5	3	Median	0.86154	1.0345	14.7	5	1	Median	1.0378	1.0672	7.9078	5	1	Median	0.94184	0.97024	26.341	5	1	Median	5326600000	2572800000	2753700000	915470000	437480000	477990000	1432700000	742680000	690030000	2048900000	915050000	1133900000	929440000	477610000	451830000	25996	1237	24622	162469;162470;162471;162472;162473;162474;162475;162476;162477;162478;162479;162480;162481;162482;162483;162484;162485;162486;162487;162488	219909;219910;219911;219912;219913;219914;219915;219916;219917;219918;219919;219920;219921;219922;219923;219924;219925;219926;219927;219928;219929;219930;219931;219932;219933;219934;219935;219936;219937;219938;219939;219940;219941	219921			33	
IRVDYSITK	1	Unmodified	1093.6132	0.61315906	2447	Q13595	TRA2A	Transformer-2 protein homolog alpha	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	38.621	37.794	3	1.4935E-05	30858	160511_QHF_FH_JSI9i_3	89.171	76.595			2.0977	1.9241	73.572	2	1	Median	1.4053	1.1436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1313	3.2371	NaN	1	1	Median	828780000	263730000	565060000	358150000	158150000	200000000	0	0	0	0	0	0	470630000	105570000	365060000	25997	2447	24623	162489;162490	219942;219943;219944	219942			3	
IRVESLLVTAISK	1	Unmodified	1427.8712	0.87116466	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	1	2		81.441	78.455	3	0.0038089	71690	160511_QHF_FH_JSI11i_3	55.885	42.749			0.87844	0.77128	18.726	4	4	Median	0.80895	0.66771	NaN	1	1	Median	0.56808	0.65253	NaN	1	1	Median	0.95969	0.91117	3.1788	2	2	Median	NaN	NaN	NaN	0	0	Median	299670000	145110000	154570000	70685000	32487000	38198000	72209000	44828000	27381000	156780000	67792000	88988000	0	0	0	25998	300	24624	162491;162492;162493;162494	219945;219946;219947;219948;219949;219950	219945			6	
IRYESGDHVAVYPANDSALVNQLGK	1	Unmodified	2715.3616	0.36164241	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	4	5	2	1	66.068	63.562	3;4	9.7121E-29	53289	160511_QHF_FH_JSI10i_3	159.51	153.66			0.94405	0.93609	13.509	12	1	Median	1.1918	0.99983	9.4839	4	0	Median	0.82106	0.98543	18.284	5	1	Median	0.94405	0.89678	1.0433	2	0	Median	0.78921	0.86536	NaN	1	0	Median	2259700000	1058700000	1201000000	782840000	312800000	470040000	1284200000	646110000	638080000	179460000	92906000	86558000	13153000	6865100	6287700	25999	1100	24625	162495;162496;162497;162498;162499;162500;162501;162502;162503;162504;162505;162506	219951;219952;219953;219954;219955;219956;219957;219958;219959;219960;219961;219962;219963;219964;219965;219966;219967;219968;219969;219970;219971;219972;219973;219974;219975;219976;219977;219978;219979;219980;219981	219958			31	
IRYESLTDPSK	1	Unmodified	1307.6721	0.67213051	898;880;2870;2869	P08238;Q58FF7;P07900;Q58FF8;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2;Putative heat shock protein HSP 90-beta 4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.15	5	9	18				4	5	8	9	15	16	9	35.033	31.273	2;3	3.3512E-13	27544	160511_QHF_FH_JSI10i_2	127.37	111.83			0.87661	0.9427	57.372	49	9	Median	1.1071	0.94527	16.935	9	0	Median	0.81837	0.94795	44.731	15	4	Median	0.96948	0.94502	90.425	16	5	Median	0.85194	0.92104	16.98	9	0	Median	113440000000	56771000000	56666000000	15846000000	6231300000	9614400000	37470000000	20453000000	17017000000	49608000000	24983000000	24625000000	10514000000	5104000000	5410000000	26000	898;880;2870;2869	24626	162507;162508;162509;162510;162511;162512;162513;162514;162515;162516;162517;162518;162519;162520;162521;162522;162523;162524;162525;162526;162527;162528;162529;162530;162531;162532;162533;162534;162535;162536;162537;162538;162539;162540;162541;162542;162543;162544;162545;162546;162547;162548;162549;162550;162551;162552;162553;162554;162555	219982;219983;219984;219985;219986;219987;219988;219989;219990;219991;219992;219993;219994;219995;219996;219997;219998;219999;220000;220001;220002;220003;220004;220005;220006;220007;220008;220009;220010;220011;220012;220013;220014;220015;220016;220017;220018;220019;220020;220021;220022;220023;220024;220025;220026;220027;220028;220029;220030;220031;220032;220033;220034;220035;220036;220037;220038;220039;220040;220041;220042;220043;220044;220045;220046;220047;220048;220049;220050;220051;220052;220053;220054;220055;220056;220057;220058;220059;220060;220061;220062;220063;220064;220065;220066;220067;220068;220069;220070;220071;220072;220073;220074	220054			91	
IRYESLTDPSKLDSGK	2	Unmodified	1807.9316	0.93159267	898;880;2870	P08238;Q58FF7;P07900;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.88	0.331		1	7							3	3	2		44.832	43.717	3;4	4.7432E-05	35748	160511_QHF_FH_JSI9i_3	97.579	77.19			0.40938	0.42518	30.829	8	3	Median	0.32596	0.26136	17.302	3	1	Plateau	0.35511	0.40006	15.325	3	2	Plateau	0.60814	0.56907	7.8003	2	0	Median	NaN	NaN	NaN	0	0	Median	816980000	575540000	241440000	295470000	220700000	74773000	324890000	238940000	85950000	196630000	115910000	80718000	0	0	0	26001	898;880;2870	24627	162556;162557;162558;162559;162560;162561;162562;162563	220075;220076;220077;220078;220079;220080;220081;220082	220081			8	
IRYESLTDPSKLDSGK	2	Acetyl (K)	1849.9422	0.94215736	898;880;2870	P08238;Q58FF7;P07900;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	3	1	64.037	53.865	3	0.00015496	27335	160513_QHF_FH_JSI10Kac_5	93.754	76.676			0.6016	0.65154	250.12	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2269	1.459	NaN	1	0	Median	0.29498	0.29095	303.05	3	2	Median	NaN	NaN	NaN	0	0	Median	140150000	108890000	31251000	0	0	0	9282800	5119600	4163200	125250000	98160000	27088000	5614800	5614800	0	26002	898;880;2870	24627	162564;162565;162566;162567;162568;162569	220083;220084;220085;220086;220087;220088;220089	220087	610;611		7	
ISAAATFIQHECFQK	1	Unmodified	1749.8508	0.85083993	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		57.081	55.533	3	0.00012051	46509	160511_QHF_FH_JSI10i_3	70.529	58.243			0.88692	0.85264	50.013	2	0	Median	1.4723	1.2144	NaN	1	0	Median	0.53427	0.59866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52218000	27337000	24882000	21288000	9558000	11731000	30930000	17779000	13151000	0	0	0	0	0	0	26003	4330	24628	162570;162571;162572	220090;220091	220091			2	
ISAAHIIMIIEK	1	Unmodified	1337.7741	0.77409316	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8.2	6.37			3						2	1	3		1	78.536	76.339	2;3	0.0022534	39513	160513_QHF_FH_JSI10Kac_6	41.092	32.137			0.68699	0.81276	26.512	4	1	Median	1.0496	0.89796	NaN	1	0	Median	0.68699	0.81276	7.8001	2	0	Median	NaN	NaN	NaN	0	0	Median	0.4617	0.50253	NaN	1	1	Median	94678000	59692000	34985000	8550500	3435200	5115300	75367000	49204000	26163000	0	0	0	10760000	7053700	3706500	26004	894	24629	162573;162574;162575;162576;162577	220092;220093;220094;220095;220096;220097	220096			6	
ISADTHQFSVTER	0	Unmodified	1489.7161	0.71612058	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	35.6	35.223	2;3	4.0409E-05	30734	160511_QHF_FH_JSI11i_3	82.55	64.741			0.96684	0.95207	30.927	6	2	Median	1.7856	1.4983	NaN	1	0	Median	1.26	1.5562	NaN	1	0	Median	0.87492	0.80948	12.997	2	1	Median	0.90797	0.93249	12.887	2	1	Median	410240000	219640000	190600000	61958000	30819000	31139000	100120000	45829000	54287000	122680000	74000000	48679000	125490000	68988000	56498000	26005	4222	24630	162578;162579;162580;162581;162582;162583	220098;220099;220100;220101;220102;220103	220098			6	
ISADTIFVTAPHK	1	Unmodified	1398.7507	0.75071518	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	102.17	102.04	2	0.046033	92669	160511_QHF_FH_JSI12i_1	45.161	16.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39597000	0	39597000	0	0	0	0	0	0	0	0	0	39597000	0	39597000	26006	1807	24631	162584	220104	220104			1	
ISAFGYLECSAK	1	Unmodified	1344.6384	0.63838754	892	P08134	RHOC	Rho-related GTP-binding protein RhoC	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.51		3	1						1	1		2	2	66.83	64.342	2	2.6881E-06	55755	160511_QHF_FH_JSI12i_3	125.22	80.08			1.0618	1.0423	40.655	5	1	Median	0.9952	0.88119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87087	0.8636	26.6	2	1	Median	1.5454	1.6633	29.177	2	0	Median	321900000	146570000	175330000	32810000	15228000	17581000	0	0	0	112520000	69261000	43258000	176570000	62081000	114490000	26007	892	24632	162585;162586;162587;162588;162589	220105;220106;220107;220108;220109	220109			5	
ISAFIERK	1	Unmodified	962.55492	0.5549159	4979	Q9NS73	MBIP	MAP3K12-binding inhibitory protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				24.416	23.095	3	0.053351	18702	160511_QHF_FH_JSI9i_3	24.155	1.0836			3.4549	2.8689	NaN	1	1	Median	3.4549	2.8689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71901000	24117000	47784000	71901000	24117000	47784000	0	0	0	0	0	0	0	0	0	26008	4979	24633	162590	220110	220110			1	
ISAILHPSTYLNK	1	Unmodified	1455.8086	0.80856441	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	54.854	54.252	2;3	4.5796E-05	44575	160511_QHF_FH_JSI9i_3	65.043	58.767			1.068	0.99701	29.394	6	3	Median	1.4563	1.1785	15.17	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95083	0.88512	13.554	2	0	Median	0.76743	0.75298	42.98	2	2	Median	457170000	229670000	227500000	170060000	85698000	84363000	0	0	0	211700000	99068000	112640000	75410000	44905000	30505000	26009	3676	24634	162591;162592;162593;162594;162595;162596;162597	220111;220112;220113;220114;220115;220116;220117;220118	220115			8	
ISALALLK	1	Unmodified	827.54804	0.54803961	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	1	3	1	70.043	67.847	2	0.0049824	60605	160511_QHF_FH_JSI11i_3	67.032	31.927			1.0997	1.067	9.5252	6	0	Median	1.237	0.97535	NaN	1	0	Median	0.92093	1.0492	NaN	1	0	Median	1.1133	1.1154	14.031	3	0	Median	1.0864	1.085	NaN	1	0	Median	2410400000	1167700000	1242700000	481050000	211140000	269910000	384410000	190480000	193930000	691730000	361970000	329760000	853210000	404080000	449120000	26010	3905	24635	162598;162599;162600;162601;162602;162603	220119;220120;220121;220122;220123;220124;220125;220126;220127;220128;220129;220130;220131	220120			13	
ISALMDK	1	Unmodified	776.41023	0.4102255	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.125	26.836	2	0.056861	22514	160511_QHF_FH_JSI12i_2	46.426	22.454			0.61461	0.6875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61461	0.6875	NaN	1	1	Median	146750000	92645000	54107000	0	0	0	0	0	0	0	0	0	146750000	92645000	54107000	26011	3240	24636	162604	220132	220132			1	
ISALQSAGVVVSMSPAQLGTTIYK	1	Unmodified	2420.2985	0.29849679	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.6	0.8	3	1	1							1	1	2	1	100.85	100.78	3	1.1658E-21	91449	160511_QHF_FH_JSI10i_1	138.49	127.19			0.89823	0.92469	32.604	5	0	Median	0.72094	0.60998	NaN	1	0	Median	0.89823	1.088	NaN	1	0	Median	0.88735	0.83699	14.093	2	0	Median	1.3877	1.4234	NaN	1	0	Median	271200000	137130000	134060000	90310000	47583000	42727000	66681000	34480000	32201000	80151000	41775000	38376000	34055000	13297000	20758000	26012	1800	24637	162605;162606;162607;162608;162609	220133;220134;220135	220134			2	
ISANENSLAVR	0	Unmodified	1172.6149	0.61494998	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1.5	0.5	1	1										1	1	31.75	30.971	2	0.045396	26178	160511_QHF_FH_JSI12i_2	47.706	21.601			0.97037	1.0044	6.6921	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0768	1.0531	NaN	1	0	Median	0.8745	0.958	NaN	1	0	Median	119760000	60770000	58993000	0	0	0	0	0	0	57212000	26834000	30378000	62551000	33936000	28615000	26013	5293	24638	162610;162611	220136;220137	220137			2	
ISAPNVDFNLEGPK	1	Unmodified	1499.762	0.76200815	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	2	2	3	71.606	71.036	2;3	2.9836E-07	61369	160511_QHF_FH_JSI12i_2	91.313	64.01			0.91848	0.95248	15.578	7	1	Median	0.89481	0.7325	4.2311	2	0	Median	0.90089	1.0593	NaN	1	1	Median	0.98111	0.95236	7.6078	2	0	Median	0.96377	0.98909	5.3335	2	0	Median	863280000	452120000	411150000	130950000	62118000	68829000	254070000	133630000	120440000	229560000	128520000	101030000	248710000	127850000	120850000	26014	2286	24639	162612;162613;162614;162615;162616;162617;162618;162619;162620	220138;220139;220140;220141;220142;220143;220144;220145;220146;220147;220148	220141			11	
ISAPTQEEK	1	Unmodified	1001.5029	0.50293991	4265	Q99418	CYTH2	Cytohesin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.894	25.356	2	0.026777	22465	160511_QHF_FH_JSI12i_1	40.882	5.6134			0.46512	0.49595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46512	0.49595	NaN	1	0	Median	256160000	173930000	82235000	0	0	0	0	0	0	0	0	0	256160000	173930000	82235000	26015	4265	24640	162621	220149	220149			1	
ISAQDAK	1	Unmodified	731.38137	0.38136821	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	8.126	4.8161	2	0.023404	3551	160513_QHF_FH_JSI11Kac_3	67.169	16.466			0.9646	0.95612	10.161	7	0	Median	1.2399	1.0395	NaN	1	0	Median	0.74646	0.88977	10.077	2	0	Median	0.96413	0.95077	0.7923	2	0	Median	1.0101	1.0948	5.7764	2	0	Median	7258600000	3646600000	3612000000	2023500000	849110000	1174400000	1909000000	1062400000	846570000	1737900000	898980000	838940000	1588300000	836170000	752110000	26016	1341	24641	162622;162623;162624;162625;162626;162627;162628	220150;220151;220152;220153;220154;220155	220152			6	
ISASLLDSR	0	Unmodified	960.52401	0.52400971	330	O43402	EMC8	ER membrane protein complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	1	2		42.124	41.555	2	0.0037068	35639	160511_QHF_FH_JSI11i_2	59.153	26.367			1.2782	1.3493	13.596	4	0	Median	1.7762	1.4785	NaN	1	0	Median	1.1214	1.2618	NaN	1	0	Median	1.2782	1.2606	19.099	2	0	Median	NaN	NaN	NaN	0	0	Median	277480000	116720000	160760000	68531000	25328000	43203000	34204000	16629000	17575000	174750000	74763000	99984000	0	0	0	26017	330	24642	162629;162630;162631;162632	220156;220157	220157			2	
ISATEDTPEAEGEVPELYHQR	0	Unmodified	2370.0975	0.097548378	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	55.4	54.594	3	4.7131E-14	46661	160511_QHF_FH_JSI12i_2	126.25	118.41			0.93838	0.98443	8.287	8	0	Median	1.1581	0.97595	16.24	2	0	Median	0.84503	1.006	9.3461	2	0	Median	0.97728	0.97196	8.0804	2	0	Median	0.92293	0.98559	7.0818	2	0	Median	715760000	365160000	350600000	153470000	58265000	95208000	203990000	117170000	86818000	212880000	112020000	100860000	145420000	77702000	67715000	26018	4047	24643	162633;162634;162635;162636;162637;162638;162639;162640;162641	220158;220159;220160;220161;220162;220163;220164;220165;220166;220167;220168;220169;220170;220171;220172	220161			15	
ISATSIFFESMPYK	1	Unmodified	1619.7905	0.79053108	1415;1414	P34897;P34896	SHMT2;SHMT1	Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		8	8						8	7	7	5	5	93.16	90.215	2;3	1.5419E-24	42306	160513_QHF_FH_JSI12Kac_6	120.84	95.12			1.0048	1.0003	18.996	24	7	Median	1.357	1.1871	17.971	7	3	Median	0.77647	0.9193	21.625	7	3	Median	0.92936	0.87833	10.356	5	1	Median	1.0569	1.0909	14.971	5	0	Median	2938300000	1503600000	1434700000	520320000	223180000	297130000	658020000	379330000	278690000	941080000	488640000	452440000	818900000	412490000	406420000	26019	1415;1414	24644	162642;162643;162644;162645;162646;162647;162648;162649;162650;162651;162652;162653;162654;162655;162656;162657;162658;162659;162660;162661;162662;162663;162664;162665	220173;220174;220175;220176;220177;220178;220179;220180;220181;220182;220183;220184;220185;220186;220187;220188;220189;220190;220191;220192;220193;220194;220195;220196;220197;220198;220199;220200;220201;220202;220203;220204;220205;220206;220207;220208;220209;220210;220211;220212;220213;220214;220215;220216;220217;220218	220216			46	
ISATSIFFESMPYK	1	Oxidation (M)	1635.7854	0.7854457	1415;1414	P34897;P34896	SHMT2;SHMT1	Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	81.94	72.764	2	1.5876E-16	39628	160513_QHF_FH_JSI9Kac_6	184.03	156.02			0.66721	0.60517	27.014	4	4	Median	0.67007	0.58264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61292	0.59202	8.4715	2	2	Median	0.95136	1.0016	NaN	1	1	Median	159260000	94463000	64798000	67000000	39746000	27254000	0	0	0	53660000	30518000	23142000	38601000	24199000	14402000	26020	1415;1414	24644	162666;162667;162668;162669;162670	220219;220220;220221;220222;220223	220221		1066;1071	5	
ISAVEPK	1	Unmodified	742.4225	0.42250475	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.961	14.834	2	0.049097	12290	160511_QHF_FH_JSI11i_1	47.849	7.7455			1.0116	0.96668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0116	0.96668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	327450000	144350000	183100000	0	0	0	0	0	0	327450000	144350000	183100000	0	0	0	26021	3799	24645	162671	220224	220224			1	
ISAVESQPSRK	1	Unmodified	1200.6463	0.64625011	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		10.305	9.856	3	0.00044459	7508	160511_QHF_FH_JSI10i_3	60.691	44.935			1.1245	0.91151	31.366	3	0	Median	1.1245	0.91151	NaN	1	0	Median	1.3712	1.5587	NaN	1	0	Median	0.9438	0.89952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	201370000	90345000	111020000	36143000	14088000	22055000	109140000	46564000	62579000	56082000	29693000	26388000	0	0	0	26022	5646	24646	162672;162673;162674	220225;220226;220227;220228;220229	220227			5	
ISAVQFPESADTTAK	1	Unmodified	1563.7781	0.77805214	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	2	2	52.588	51.883	2	0.0001802	47146	160511_QHF_FH_JSI12i_1	106.17	79.501			0.96981	0.99022	15.171	7	6	Median	1.3441	1.1147	16.395	2	2	Median	0.73777	0.86494	19.13	2	2	Median	0.96981	0.92628	NaN	1	0	Median	0.92347	0.96953	8.677	2	2	Median	1132900000	567410000	565520000	322180000	139570000	182610000	344020000	184290000	159720000	153090000	82365000	70724000	313640000	161170000	152470000	26023	2535	24647	162675;162676;162677;162678;162679;162680;162681;162682	220230;220231;220232;220233;220234;220235;220236;220237;220238	220232			9	
ISAVSVAER	0	Unmodified	930.51345	0.51344502	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	26.74	26.197	2	0.015336	21791	160511_QHF_FH_JSI12i_3	51.346	17.093			0.85948	0.73901	26.798	5	0	Median	0.85948	0.73901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96159	0.94025	34.406	2	0	Median	0.88375	0.93225	35.219	2	0	Median	842080000	454960000	387110000	180590000	95238000	85349000	0	0	0	394760000	217740000	177030000	266730000	141990000	124740000	26024	2265	24648	162683;162684;162685;162686;162687	220239;220240	220240			2	
ISAWHNNVEK	1	Unmodified	1196.5938	0.5938206	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	20.759	20.144	2;3	0.00033726	16189	160511_QHF_FH_JSI9i_3	77.677	49.279			1.1429	1.1845	43.453	8	3	Median	1.1862	0.97099	27.447	2	0	Median	1.7368	1.9774	71.614	2	1	Median	1.1273	1.0715	14.841	2	1	Median	1.1906	1.1961	33.449	2	1	Median	1041200000	463370000	577790000	125120000	41619000	83499000	185120000	62734000	122390000	348570000	158170000	190390000	382350000	200840000	181510000	26025	2525	24649	162688;162689;162690;162691;162692;162693;162694;162695	220241;220242;220243;220244;220245;220246	220243			5	
ISDDLMQK	1	Unmodified	948.45863	0.45863226	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	30.958	30.412	2	0.002353	27051	160511_QHF_FH_JSI11i_1	89.296	33.174			1.2636	1.3512	53.275	5	3	Median	0.83404	0.69822	NaN	1	0	Median	0.77393	0.91872	69.557	2	2	Median	1.9963	1.9671	NaN	1	1	Median	1.2636	1.3512	NaN	1	0	Median	1943000000	953610000	989370000	345960000	175840000	170120000	836860000	411110000	425740000	401100000	180840000	220260000	359060000	185810000	173250000	26026	313	24650	162696;162697;162698;162699;162700	220247;220248;220249;220250;220251	220247			5	
ISDEDWDIIHR	0	Unmodified	1397.6575	0.65754307	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.739	3	5	3							2	3	4	2	57.483	56.798	2;3	2.6123E-06	48581	160511_QHF_FH_JSI12i_2	83.182	76.052			1.0517	1.0517	14.082	10	2	Median	1.3964	1.1768	12.321	2	1	Median	0.77086	0.91301	19.475	2	1	Median	1.0517	1.038	6.9517	4	0	Median	1.0968	1.1489	17.942	2	0	Median	987350000	512950000	474390000	104400000	42486000	61917000	238940000	128900000	110030000	401160000	216010000	185150000	242840000	125550000	117290000	26027	1747	24651	162701;162702;162703;162704;162705;162706;162707;162708;162709;162710;162711	220252;220253;220254;220255;220256;220257;220258;220259;220260;220261;220262;220263;220264;220265;220266;220267;220268	220255			17	
ISDEGIAYLVK	1	Unmodified	1206.6496	0.64960415	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	66.821	66.066	2	0.00038842	60192	160511_QHF_FH_JSI12i_1	72.325	53.885			1.1312	1.1156	12.663	6	0	Median	1.1609	0.96955	NaN	1	0	Median	0.85094	1.0181	5.9185	2	0	Median	1.1886	1.1725	NaN	1	0	Median	1.1832	1.2756	4.2849	2	0	Median	694020000	336040000	357990000	78186000	37725000	40461000	236110000	124140000	111980000	178230000	85207000	93024000	201490000	88970000	112520000	26028	1428	24652	162712;162713;162714;162715;162716;162717	220269;220270;220271;220272;220273;220274;220275	220273			6	
ISDIMDVYEMK	1	Unmodified	1342.6149	0.6148749	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			72.461	72.249	2	0.0059223	65516	160511_QHF_FH_JSI10i_1	54.486	46.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26029	3706	24653	162718	220276	220276			1	
ISDIQSQLEK	1	Unmodified	1159.6085	0.60846762	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.639	37.206	2	0.0021226	33622	160511_QHF_FH_JSI12i_1	61.765	43.226			0.74366	0.74328	11.341	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71975	0.68601	NaN	1	0	Median	0.76836	0.80534	NaN	1	0	Median	567320000	350480000	216840000	0	0	0	0	0	0	324480000	211080000	113400000	242840000	139400000	103440000	26030	5042	24654	162719;162720	220277;220278;220279	220278			3	
ISDSTLKTVPATSQLSK	2	Acetyl (K)	1816.9782	0.97820851	5405	Q9ULM3	YEATS2	YEATS domain-containing protein 2	yes	yes	1	0	0	1				By MS/MS	12.5	0.5					1	1							2	68.969	59.639	3	0.0018421	26330	160513_QHF_FH_JSI12Kac_2	55.755	37.617			0.84878	0.92159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84878	0.92159	NaN	1	0	Median	22280000	15132000	7148600	0	0	0	0	0	0	0	0	0	22280000	15132000	7148600	26031	5405	24655	162721;162722	220280;220281	220281	3399		2	
ISDSVLVDIK	1	Unmodified	1087.6125	0.61249036	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	1	1	2	61.009	60.131	2	0.00014788	51496	160511_QHF_FH_JSI12i_2	83.499	64.521			0.9577	1.0482	32.562	6	2	Median	1.0849	0.92484	67.511	2	1	Median	1.0181	1.2471	NaN	1	0	Median	0.92725	0.93135	NaN	1	1	Median	0.9577	1.0482	7.1924	2	0	Median	1117700000	553120000	564550000	296300000	145910000	150390000	129920000	68002000	61919000	198210000	97517000	100700000	493240000	241700000	251550000	26032	1630	24656	162723;162724;162725;162726;162727;162728	220282;220283;220284;220285;220286;220287;220288;220289	220282			8	
ISDSVLVDIKDTEPLIQTAK	2	Unmodified	2184.1889	0.18892957	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							1	3	2	4	87.657	87.177	3	2.2735E-06	77277	160511_QHF_FH_JSI10i_2	94.632	80.018			1.0204	1.023	28.285	10	6	Median	1.2137	1.0414	NaN	1	1	Median	0.88475	1.0048	25.917	3	2	Median	0.8803	0.85593	16.038	2	1	Median	1.3586	1.4745	31.719	4	2	Median	1418500000	691300000	727170000	108490000	52920000	55572000	307130000	172080000	135050000	241230000	130180000	111050000	761620000	336120000	425500000	26033	1630	24657	162729;162730;162731;162732;162733;162734;162735;162736;162737;162738	220290;220291;220292;220293;220294;220295;220296;220297;220298;220299;220300;220301	220299			12	
ISDTGLAAGTVPEK	1	Unmodified	1357.7089	0.70890994	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	41.546	40.63	2	7.7266E-05	35922	160511_QHF_FH_JSI9i_1	115.57	90.015			1.2097	1.1173	27.827	2	2	Median	1.6633	1.3602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87981	0.91771	NaN	1	1	Median	145600000	72419000	73182000	69866000	25017000	44849000	0	0	0	0	0	0	75735000	47402000	28333000	26034	3239	24658	162739;162740	220302;220303	220303			2	
ISEAEAVHPVK	1	Unmodified	1178.6295	0.62953741	734	O95822	MLYCD	Malonyl-CoA decarboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	34.37	33.666	2;3	0.020537	28588	160511_QHF_FH_JSI11i_2	22.72	1.8503			0.92193	1.0235	27.814	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0154	1.2742	NaN	1	0	Median	1.1006	1.1162	NaN	1	0	Median	0.74857	0.79296	23.826	2	0	Median	1077200000	459210000	618000000	0	0	0	106130000	56789000	49339000	111030000	59209000	51823000	860050000	343210000	516840000	26035	734	24659	162741;162742;162743;162744	220304;220305;220306	220304			3	
ISEECIAQWK	1	Unmodified	1262.5965	0.59652272	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.035	50.509	2	0.010689	43578	160511_QHF_FH_JSI11i_2	47.853	35.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26036	1823	24660	162745	220307	220307			1	
ISEEDELDTK	1	Unmodified	1177.535	0.5350279	2632	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.212	24.653	2	0.0010017	21511	160511_QHF_FH_JSI11i_1	68.49	42.683			0.94933	0.96095	10.65	4	0	Median	1.3256	1.0802	NaN	1	0	Median	0.70597	0.84536	NaN	1	0	Median	1.0216	1.0046	NaN	1	0	Median	0.88217	0.91919	NaN	1	0	Median	522140000	261740000	260400000	135250000	60968000	74285000	128840000	69287000	59554000	91632000	42569000	49063000	166410000	88913000	77496000	26037	2632	24661	162746;162747;162748;162749	220308;220309;220310;220311;220312;220313	220308			6	
ISEENIK	1	Unmodified	831.4338	0.43379771	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.091	15.072	2	0.040857	12322	160511_QHF_FH_JSI9i_1	49.358	11.713			4.0653	3.3239	NaN	1	1	Median	4.0653	3.3239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	840150000	107100000	733050000	840150000	107100000	733050000	0	0	0	0	0	0	0	0	0	26038	4017	24662	162750	220314	220314			1	
ISEIEDAAFLAR	0	Unmodified	1333.6878	0.68778057	622;533	O75477;O94905	ERLIN1;ERLIN2	Erlin-1;Erlin-2	no	no	0	0	0	0			By MS/MS		2	0		1										1		67.188	66.613	2	0.015164	58115	160511_QHF_FH_JSI11i_2	51.872	34.652			0.99168	0.9834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99168	0.9834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54313000	27268000	27044000	0	0	0	0	0	0	54313000	27268000	27044000	0	0	0	26039	533;622	24663	162751	220315	220315			1	
ISELDAFLK	1	Unmodified	1034.5648	0.56481189	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	3	2	72.742	72.163	2	0.00013513	65533	160511_QHF_FH_JSI11i_1	90.657	37.941			0.60188	0.65201	85.813	8	5	Median	0.37186	0.30828	NaN	1	1	Median	0.52148	0.62651	45.548	2	1	Median	0.49192	0.50473	127.64	3	2	Median	0.90358	0.97798	21.127	2	1	Median	2596800000	1784600000	812180000	390340000	285820000	104520000	665580000	456310000	209260000	1039100000	755940000	283180000	501790000	286570000	215220000	26040	2244	24664	162752;162753;162754;162755;162756;162757;162758;162759	220316;220317;220318;220319;220320;220321;220322;220323;220324;220325;220326;220327;220328	220317			13	
ISELGAGNGGVVTK	1	Unmodified	1300.6987	0.69867961	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	36.387	34.565	2	0.00030327	30439	160511_QHF_FH_JSI10i_2	81.431	59.968			0.94989	0.98997	30.663	9	2	Median	1.1737	0.97426	14.545	2	0	Median	0.83405	1.0047	2.0875	2	0	Median	0.94989	0.94172	55.581	3	1	Median	0.93971	0.99688	16.464	2	1	Median	942670000	502710000	439950000	259730000	130930000	128800000	249540000	146870000	102670000	233680000	138040000	95639000	199720000	86872000	112850000	26041	1453	24665	162760;162761;162762;162763;162764;162765;162766;162767;162768	220329;220330;220331;220332;220333;220334;220335;220336	220336			6	
ISELGSQLSDEAVEDGLFHEFK	1	Unmodified	2449.1649	0.16489966	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.471	94.466	3	7.8066E-06	81885	160511_QHF_FH_JSI12i_3	61.616	49.97			1.1465	1.1277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1465	1.1277	NaN	1	0	Median	30512000	15445000	15068000	0	0	0	0	0	0	0	0	0	30512000	15445000	15068000	26042	4254	24666	162769	220337;220338	220338			2	
ISELQWSVMDQEMR	0	Unmodified	1750.8018	0.80184082	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	78.134	77.192	2	0.00072369	67882	160511_QHF_FH_JSI11i_2	88.441	75.673			1.5017	1.6981	28.289	4	4	Median	NaN	NaN	NaN	0	0	Median	1.7297	2.0428	NaN	1	1	Median	2.0996	2.0513	NaN	1	1	Median	1.1857	1.2796	13.881	2	2	Median	97034000	42643000	54391000	0	0	0	15945000	3440100	12505000	17822000	8001100	9820900	63267000	31202000	32066000	26043	5720	24667	162770;162771;162772;162773	220339;220340;220341;220342	220341			4	
ISENMNLQFENQMNK	1	Unmodified	1838.8291	0.82911821	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	60.066	59.412	2	4.5918E-21	53823	160511_QHF_FH_JSI11i_1	134.99	113.74			0.10268	0.10848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10268	0.10848	NaN	1	1	Median	204860000	186760000	18101000	0	0	0	0	0	0	0	0	0	204860000	186760000	18101000	26044	3438	24668	162774;162775	220343;220344	220343			2	
ISENSYSLDDLEIGPGQLSSSTFDSEK	1	Unmodified	2917.3353	0.33527205	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			93.432	93.422	3	0.019853	84668	160511_QHF_FH_JSI10i_1	26.766	23.779			0.80141	0.91206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80141	0.91206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13734000	11854000	1880500	0	0	0	13734000	11854000	1880500	0	0	0	0	0	0	26045	5293	24669	162776	220345	220345			1	
ISEPEAEISPGSLPVTANMK	1	Unmodified	2069.0351	0.035071462	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				74.862	73.957	2	0.012937	65757	160511_QHF_FH_JSI9i_1	43.184	21.634			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26046	4226	24670	162777	220346	220346			1	
ISEQFSAMFR	0	Unmodified	1214.5754	0.57539335	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2.25	0.433		3	1							1		1	2	64.048	63.284	2	0.028836	55150	160511_QHF_FH_JSI11i_2	40.058	22.15			1.0057	0.96829	25.532	4	0	Median	1.219	1.0582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73177	0.75132	NaN	1	0	Median	1.0449	1.0994	30.506	2	0	Median	186210000	105810000	80406000	30216000	14564000	15651000	0	0	0	76067000	48559000	27508000	79931000	42685000	37247000	26047	4440	24671	162778;162779;162780;162781	220347	220347			1	
ISEQFTAMFR	0	Unmodified	1228.591	0.59104341	2075;872;2477;811;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	70.342	66.875	2	3.0924E-06	59789	160511_QHF_FH_JSI10i_2	110.87	78.937			0.99042	1.1002	27.147	12	2	Median	1.5531	1.3087	16.844	3	0	Median	0.7038	0.86019	15.24	3	1	Plateau	0.88881	0.83034	45.213	3	1	Median	1.0239	1.0926	14.988	3	0	Median	6319200000	2931000000	3388200000	1269300000	453720000	815580000	1289600000	717110000	572500000	2354300000	1113700000	1240600000	1406000000	646400000	759570000	26048	872;2075;2477;811;2430	24672	162782;162783;162784;162785;162786;162787;162788;162789;162790;162791;162792;162793;162794	220348;220349;220350;220351;220352;220353;220354;220355;220356;220357;220358;220359;220360;220361;220362;220363;220364;220365;220366	220359			19	
ISEQFTAMFR	0	Oxidation (M)	1244.586	0.58595803	2075;872;2477;811;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	1	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	60.564	50.999	2	0.0035747	27198	160513_QHF_FH_JSI9Kac_6	63.076	51.924			1.1443	1.2416	13.632	3	0	Median	1.4611	1.2509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0346	0.98421	NaN	1	0	Median	1.1443	1.2416	NaN	1	0	Median	88525000	36488000	52037000	33557000	10662000	22895000	0	0	0	29403000	14609000	14794000	25564000	11216000	14349000	26049	872;2075;2477;811;2430	24672	162795;162796;162797	220367;220368;220369	220369		325	3	
ISEQFTAMFRR	0	Unmodified	1384.6922	0.69215444	2075;872;2477;811;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	66.156	57.208	3	0.00014075	31476	160513_QHF_FH_JSI10Kac_6	84.507	73.295			1.3996	1.1976	10.629	3	0	Plateau	1.5157	1.3218	NaN	1	0	Median	1.0078	1.1976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3996	1.481	NaN	1	0	Median	319220000	141050000	178170000	64761000	23767000	40993000	215260000	99180000	116080000	0	0	0	39200000	18104000	21096000	26050	872;2075;2477;811;2430	24673	162798;162799;162800	220370;220371;220372;220373;220374	220374			5	
ISEQSDAK	1	Unmodified	876.41888	0.41887593	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	3	1	5.7809	1.9745	2	0.00051944	3237	160511_QHF_FH_JSI10i_1	105.57	25.971			1.1384	1.1051	7.033	8	0	Median	1.3764	1.1889	NaN	1	0	Median	0.91182	1.0921	11.828	3	0	Median	1.1399	1.1181	1.8866	3	0	Median	1.0412	1.0843	NaN	1	0	Median	21226000000	10362000000	10864000000	4418100000	1907800000	2510200000	5972800000	2949900000	3022900000	5396700000	2714800000	2681800000	5438200000	2789300000	2648900000	26051	1263	24674	162801;162802;162803;162804;162805;162806;162807;162808	220375;220376;220377;220378;220379	220378			5	
ISEQSDAKLK	2	Acetyl (K)	1159.6085	0.60846762	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	30.199	22.03	2	4.4275E-05	13168	160513_QHF_FH_JSI12Kac_3	104.05	66.499			0.81224	0.88893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81224	0.88893	NaN	1	0	Median	44622000	23179000	21443000	0	0	0	0	0	0	0	0	0	44622000	23179000	21443000	26052	1263	24675	162809	220380;220381	220381	1156		2	
ISESPSEIMESLTK	1	Unmodified	1549.7545	0.75453951	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.215	80.057	2	0.0018294	72767	160511_QHF_FH_JSI10i_1	74.392	53.02			1.0831	1.2905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0831	1.2905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63755000	30951000	32804000	0	0	0	63755000	30951000	32804000	0	0	0	0	0	0	26053	3290	24676	162810	220382	220382			1	
ISEVLQK	1	Unmodified	815.47527	0.4752686	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.468	21.258	2	0.017401	17646	160511_QHF_FH_JSI12i_2	62.717	12.598			0.17962	0.19929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17962	0.19929	NaN	1	1	Median	104450000	79934000	24518000	0	0	0	0	0	0	0	0	0	104450000	79934000	24518000	26054	2252	24677	162811	220383	220383			1	
ISEVVELLK	1	Unmodified	1028.6118	0.61176208	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	67.596	66.778	2	0.0010309	57400	160511_QHF_FH_JSI12i_2	74.92	37.362			0.32074	0.39647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32074	0.39647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77870000	49783000	28087000	0	0	0	77870000	49783000	28087000	0	0	0	0	0	0	26055	1778	24678	162812;162813	220384;220385	220384			2	
ISFCLDIHNMSVK	1	Unmodified	1562.7585	0.75851945	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	77.641	77.508	2;3	0.00045876	67292	160511_QHF_FH_JSI12i_3	59.248	46.415			1.2417	1.2122	40.609	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95883	0.90964	NaN	1	0	Median	1.6079	1.6154	NaN	1	0	Median	87074000	29187000	57887000	0	0	0	0	0	0	24752000	12894000	11858000	62322000	16293000	46029000	26056	313	24679	162814;162815;162816	220386;220387;220388;220389	220388			4	
ISFDEFVYIFQEVK	1	Unmodified	1762.8818	0.88178893	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		8							8	4	4	4	4	100.44	95.906	2;3	1.8771E-67	51084	160513_QHF_FH_JSI11Kac_6	222.49	187.77			0.96366	0.96965	8.0922	15	3	Median	1.1195	0.95744	7.4246	4	2	Median	0.80352	0.96573	8.6959	4	0	Median	1.0351	1.0432	8.7436	4	0	Median	0.88366	0.92856	7.9826	3	1	Median	5725000000	2896500000	2828400000	1375000000	635010000	740020000	1352400000	746390000	605970000	1278800000	604040000	674780000	1718800000	911090000	807670000	26057	1039	24680	162817;162818;162819;162820;162821;162822;162823;162824;162825;162826;162827;162828;162829;162830;162831;162832	220390;220391;220392;220393;220394;220395;220396;220397;220398;220399;220400;220401;220402;220403;220404;220405;220406;220407;220408;220409;220410;220411;220412	220394			23	
ISFDEYWTLIGGITGPIAK	1	Unmodified	2080.0881	0.088093311	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	2	3	1	99.825	94.94	2;3	1.2036E-31	53778	160513_QHF_FH_JSI10Kac_6	208.97	182			0.85437	0.85522	25.64	5	1	Median	0.87049	0.74499	NaN	1	0	Median	0.98131	1.197	25.487	2	1	Median	0.85437	0.85522	NaN	1	0	Median	0.78165	0.82107	NaN	1	0	Median	601970000	295480000	306490000	153100000	76846000	76256000	142280000	69796000	72482000	106600000	39302000	67297000	199990000	109540000	90451000	26058	4073	24681	162833;162834;162835;162836;162837;162838;162839	220413;220414;220415;220416;220417;220418;220419	220419			7	
ISFDLSLAR	0	Unmodified	1020.5604	0.56039521	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	75.74	75.007	2	0.028518	64879	160511_QHF_FH_JSI12i_2	40.502	14.563			1.1541	1.0967	12.585	4	0	Median	1.3537	1.1656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.022	1.0318	NaN	1	0	Median	1.0863	1.1628	19.145	2	0	Median	238600000	115340000	123260000	38559000	19556000	19003000	0	0	0	70693000	34260000	36433000	129350000	61525000	67826000	26059	1012;1666	24682	162840;162841;162842;162843	220420	220420			1	
ISFGTPAPGFSSMLYGMK	1	Unmodified	1889.9056	0.90557761	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	3	3	2	100.95	100.86	2;3	2.8714E-53	87501	160511_QHF_FH_JSI12i_3	174.95	163.26			1.001	1.0375	19.108	8	2	Median	1.8694	1.5705	NaN	1	0	Median	1.0851	1.3153	10.382	3	2	Plateau	1.0088	0.95539	7.1504	2	0	Median	0.9433	0.95511	7.5152	2	0	Median	988540000	455610000	532930000	34665000	13435000	21230000	172990000	82674000	90312000	297260000	116840000	180420000	483630000	242660000	240960000	26060	4856	24683	162844;162845;162846;162847;162848;162849;162850;162851;162852	220421;220422;220423;220424;220425;220426;220427;220428;220429;220430;220431;220432;220433	220433			13	
ISFKFDHLR	1	Acetyl (K)	1203.64	0.64004252	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	0	1	By MS/MS		By MS/MS		16	0									2	1		1		70.55	61.086	3	0.00061094	33101	160513_QHF_FH_JSI11Kac_6	79.148	64.587			0.62222	0.61467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62222	0.61467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24715000	18394000	6320700	0	0	0	0	0	0	24715000	18394000	6320700	0	0	0	26061	1788	24684	162853;162854	220434;220435	220434	1801		2	
ISFKFDHLRK	2	Acetyl (K)	1331.735	0.73500553	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	60.269	50.915	4	0.00014117	27870	160513_QHF_FH_JSI10Kac_6	91.549	69.98			0.91306	1.0552	173.74	3	1	Median	NaN	NaN	NaN	0	0	Median	0.91306	1.0552	NaN	1	0	Median	0.055305	0.052245	NaN	1	1	Median	0.9588	1.0632	NaN	1	0	Median	80612000	44370000	36242000	0	0	0	60687000	31267000	29420000	10012000	7966100	2046000	9912700	5136700	4776000	26062	1788	24685	162855;162856;162857	220436;220437;220438	220438	1801		3	
ISFLENNLEQLTK	1	Unmodified	1547.8195	0.81952302	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	3	4	2	85.537	85.095	2	3.0591E-10	75523	160511_QHF_FH_JSI10i_2	146.16	115.29			0.81157	1.339	38.508	9	6	Linear	1.1707	0.99933	NaN	1	0	Median	0.50668	0.61144	69.52	2	1	Median	1.0884	1.0951	35.441	4	4	Linear	0.92559	1.0065	17.512	2	1	Median	849510000	448220000	401290000	118270000	63082000	55191000	149280000	83645000	65635000	328430000	164230000	164200000	253530000	137270000	116260000	26063	1400	24686	162858;162859;162860;162861;162862;162863;162864;162865;162866;162867	220439;220440;220441;220442;220443;220444;220445;220446;220447;220448;220449;220450;220451	220450			13	
ISFSNIISDMK	1	Unmodified	1253.6326	0.63257388	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							3	2	1	1	87.752	87.183	2	3.775E-19	75755	160511_QHF_FH_JSI12i_3	168.74	108.15			1.0181	1.0032	6.7472	6	1	Median	1.1588	0.96567	3.3748	2	1	Median	0.90835	1.1081	2.0271	2	0	Median	1.045	0.98081	NaN	1	0	Median	0.99179	1.0176	NaN	1	0	Median	733300000	400050000	333250000	83791000	44638000	39153000	118680000	58809000	59867000	226590000	126120000	100470000	304240000	170490000	133760000	26064	3868	24687	162868;162869;162870;162871;162872;162873;162874	220452;220453;220454;220455;220456;220457;220458;220459;220460;220461;220462;220463;220464;220465	220465			14	
ISFYIPPPATHTLPTHLSAEIVK	1	Unmodified	2531.3788	0.37879602	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.704	88.593	4	4.3652E-05	76839	160511_QHF_FH_JSI12i_3	50.426	42.472			1.1897	1.1966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1897	1.1966	NaN	1	1	Median	56451000	28719000	27732000	0	0	0	0	0	0	0	0	0	56451000	28719000	27732000	26065	5041	24688	162875	220466	220466			1	
ISGASEKDIVHSGLAYTMER	1	Acetyl (K)	2205.0736	0.073582234	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			75.541	69.17	3	0.021005	37678	160513_QHF_FH_JSI10Kac_6	42.041	33.44			0.87029	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87029	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25446000	10548000	14897000	0	0	0	25446000	10548000	14897000	0	0	0	0	0	0	26066	762	24689	162876	220467	220467	373		0	
ISGATFSVGSGSVYAYGVMDR	0	Unmodified	2122.9994	0.99935466	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.57	1	7	5						1	2	2	7	3	80.87	79.627	2;3	1.7437E-85	69711	160511_QHF_FH_JSI12i_3	249.13	224.88			0.98716	0.97192	18.643	13	4	Median	1.3859	1.1684	2.9955	2	0	Median	0.66911	0.79612	15.044	2	1	Median	1.0288	1.001	14.006	6	3	Median	0.80196	0.80885	15.553	3	0	Plateau	542030000	285390000	256640000	79527000	36796000	42731000	28521000	19540000	8981300	227080000	109880000	117200000	206900000	119170000	87721000	26067	1303	24690	162877;162878;162879;162880;162881;162882;162883;162884;162885;162886;162887;162888;162889;162890	220468;220469;220470;220471;220472;220473;220474;220475;220476;220477;220478;220479;220480;220481;220482;220483;220484;220485;220486	220485			18	
ISGATFSVGSGSVYAYGVMDR	0	Oxidation (M)	2138.9943	0.99426928	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	71.493	71.196	2	1.868E-12	61741	160511_QHF_FH_JSI12i_3	114.74	101.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26068	1303	24690	162891	220487	220487		957	1	
ISGETIFVTAPHEATAGIIGVNR	0	Unmodified	2352.2438	0.24375911	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	1	2	4	81.376	80.81	2;3;4	3.3247E-38	70155	160511_QHF_FH_JSI12i_3	186.63	172.47			0.97413	1.018	21.355	8	1	Median	1.4978	1.2781	0.37527	2	0	Median	0.59055	0.73529	NaN	1	0	Median	0.94597	0.93076	8.3448	2	0	Median	1.1368	1.2194	20.892	3	1	Plateau	1696200000	790470000	905730000	219820000	76224000	143600000	174920000	95252000	79668000	632450000	295320000	337140000	669010000	323680000	345330000	26069	2155	24691	162892;162893;162894;162895;162896;162897;162898;162899;162900	220488;220489;220490;220491;220492;220493;220494;220495;220496;220497;220498;220499;220500;220501	220499			14	
ISGETIFVTAPHEATAGIIGVNRK	1	Unmodified	2480.3387	0.33872212	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.38		5	7						3	6	5	3	1	74.492	72.202	3;4	1.0398E-34	60293	160511_QHF_FH_JSI9i_3	177.87	170.51			1.0202	0.98183	16.472	15	5	Median	1.0697	0.88545	14.522	6	3	Median	0.89829	1.0427	9.0939	5	2	Median	1.034	0.98183	10.539	3	0	Median	0.65902	0.68011	NaN	1	0	Median	4900100000	2386200000	2513900000	1604600000	803430000	801190000	1553800000	763420000	790390000	1595500000	738270000	857250000	146140000	81077000	65062000	26070	2155	24692	162901;162902;162903;162904;162905;162906;162907;162908;162909;162910;162911;162912;162913;162914;162915	220502;220503;220504;220505;220506;220507;220508;220509;220510;220511;220512;220513;220514;220515;220516;220517;220518;220519;220520;220521;220522;220523;220524;220525;220526;220527;220528	220514			27	
ISGGSVVEMQGDEMTR	0	Unmodified	1694.7604	0.76036994	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								4	3	3	3	47.802	47	2;3	7.1021E-40	42509	160511_QHF_FH_JSI11i_1	198.14	186.27			1.0188	1.0233	8.5799	13	1	Median	1.3552	1.0515	4.7989	4	0	Linear	0.92893	1.0979	8.8968	3	0	Median	1.0313	1.0034	7.9684	3	1	Median	0.84214	0.89517	8.4863	3	0	Plateau	4326400000	2214200000	2112100000	1106200000	497440000	608810000	1135500000	628840000	506660000	1162000000	642790000	519190000	922640000	445170000	477470000	26071	576	24693	162916;162917;162918;162919;162920;162921;162922;162923;162924;162925;162926;162927;162928	220529;220530;220531;220532;220533;220534;220535;220536;220537;220538;220539;220540;220541;220542;220543;220544;220545;220546;220547;220548;220549;220550;220551;220552	220530			24	
ISGGSVVEMQGDEMTR	0	Oxidation (M)	1710.7553	0.75528456	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	36.955	36.499	2	4.1723E-05	32477	160511_QHF_FH_JSI10i_1	117.79	98.185			0.93932	1.0237	16.776	4	4	Median	NaN	NaN	NaN	0	0	Median	0.96854	1.1068	NaN	1	1	Median	0.8873	0.88502	NaN	1	1	Median	1.0684	1.1045	21.77	2	2	Median	381110000	201210000	179900000	0	0	0	118330000	63713000	54621000	131110000	65565000	65548000	131660000	71928000	59731000	26072	576	24693	162929;162930;162931;162932	220553;220554;220555;220556	220556		219;220	4	
ISGIFLTNHIK	1	Unmodified	1241.7132	0.71320746	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	2	2	2	58.978	55.736	2;3	8.7624E-06	46700	160511_QHF_FH_JSI10i_3	91.549	78.149			0.92125	0.89567	19.164	8	4	Median	1.1099	0.89567	5.3444	2	0	Median	0.92125	1.0333	2.3849	2	0	Median	0.94987	0.89792	43.978	2	2	Median	0.77508	0.81237	3.8549	2	2	Median	756810000	400710000	356110000	176100000	85945000	90156000	149720000	83112000	66607000	219500000	119320000	100180000	211490000	112330000	99162000	26073	3183	24694	162933;162934;162935;162936;162937;162938;162939;162940	220557;220558;220559;220560;220561;220562;220563;220564	220558			8	
ISGLGLTPEQK	1	Unmodified	1141.6343	0.63428844	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.94	4	3	1				1			2	3	1	3	46.266	44.111	2	6.4514E-05	39629	160511_QHF_FH_JSI10i_1	93.096	29.88			0.8022	0.77397	36.77	8	4	Median	0.6358	0.53273	28.603	2	1	Median	0.66356	0.7758	29.297	2	1	Median	0.95398	0.91857	NaN	1	0	Median	0.97255	1.0089	42.766	3	2	Median	2864900000	1693800000	1171100000	745310000	424010000	321300000	602460000	359810000	242650000	498620000	272530000	226090000	1018500000	637500000	381030000	26074	736	24695	162941;162942;162943;162944;162945;162946;162947;162948;162949	220565;220566;220567;220568;220569;220570;220571;220572;220573;220574;220575;220576	220571			12	
ISGLIYEETR	0	Unmodified	1179.6136	0.61355299	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.7	6.13		1						2			1	1	1	53.553	45.947	2	0.0021201	39543	160511_QHF_FH_JSI12i_2	61.78	29.365			1.0314	1.1421	17.068	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0314	1.2303	NaN	1	0	Median	0.90977	0.88827	NaN	1	0	Median	1.0484	1.1421	NaN	1	0	Median	248230000	120300000	127930000	0	0	0	8601800	4011700	4590000	12153000	6061900	6090700	227480000	110220000	117250000	26075	2019	24696	162950;162951;162952	220577;220578	220577			2	
ISGLVTDVISLTDSVQELENK	1	Unmodified	2259.1846	0.18457247	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.29	102.1	3	0.00019273	88091	160511_QHF_FH_JSI12i_2	52.72	44.075			0.87433	0.96243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87433	0.96243	NaN	1	0	Median	127970000	63893000	64077000	0	0	0	0	0	0	0	0	0	127970000	63893000	64077000	26076	3203	24697	162953	220579	220579			1	
ISGMNGIHVCMVFEVLGHHLLK	1	Unmodified	2490.2698	0.2697964	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	85.842	85.384	4	0.056752	76234	160511_QHF_FH_JSI11i_3	11.46	3.4675			0.76075	0.69915	14.526	3	0	Plateau	1.0982	0.91107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76075	0.69915	NaN	1	0	Median	0.74709	0.71958	NaN	1	0	Median	133650000	79977000	53675000	17252000	7085400	10166000	0	0	0	71884000	46157000	25727000	44517000	26735000	17781000	26077	2089	24698	162954;162955;162956	220580	220580			1	
ISGSILNELIGLVR	0	Unmodified	1482.877	0.87697832	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	3	1	1	101.45	100.25	2;3	2.31E-16	53356	160513_QHF_FH_JSI10Kac_6	206.58	172.62			0.90703	0.88717	13.669	5	1	Median	1.0873	0.88717	NaN	1	0	Median	0.85579	0.98693	7.9917	2	1	Median	0.91168	0.87635	NaN	1	0	Median	0.69716	0.71672	NaN	1	0	Median	1215700000	660480000	555210000	113710000	55026000	58686000	362940000	190050000	172890000	457210000	251210000	206000000	281840000	164190000	117640000	26078	3343	24699	162957;162958;162959;162960;162961;162962	220581;220582;220583;220584;220585;220586;220587	220587			7	
ISGSLVDTSYK	1	Unmodified	1168.5976	0.59756858	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.256	39.932	2	0.040205	36026	160511_QHF_FH_JSI11i_1	45.433	30.759			1.2058	1.1254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2058	1.1254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69872000	41733000	28139000	0	0	0	0	0	0	69872000	41733000	28139000	0	0	0	26079	4425	24700	162963	220588	220588			1	
ISGTTALQEALK	1	Unmodified	1230.682	0.68196691	1360;5265	P30622;Q9UDT6	CLIP1;CLIP2	CAP-Gly domain-containing linker protein 1;CAP-Gly domain-containing linker protein 2	no	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	58.238	57.067	2	0.035131	49014	160511_QHF_FH_JSI12i_2	46.796	32.13			1.1236	1.1077	26.415	2	2	Median	1.0621	0.91901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1886	1.3352	NaN	1	1	Median	189710000	80339000	109370000	79171000	33896000	45275000	0	0	0	0	0	0	110540000	46443000	64096000	26080	1360;5265	24701	162964;162965	220589;220590	220589			2	
ISGTVNIR	0	Unmodified	858.49232	0.49231565	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	24.587	23.71	2	0.0070234	19662	160511_QHF_FH_JSI12i_3	60.788	27.05			1.1436	1.1425	13.042	3	0	Median	1.1436	0.92717	NaN	1	0	Median	1.053	1.1784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1463	1.1425	NaN	1	0	Median	1104700000	485820000	618850000	86319000	32405000	53914000	135600000	72995000	62607000	0	0	0	882750000	380420000	502330000	26081	1282	24702	162966;162967;162968	220591	220591			1	
ISGWTQALPDMVVSHLFGK	1	Unmodified	2085.0717	0.07173174	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	3	3	2	4	99.01	94.628	2;3	2.5265E-25	49278	160513_QHF_FH_JSI11Kac_6	147.53	137.39			1.0042	1.0215	22.118	12	2	Median	1.1767	1.0115	3.2297	3	0	Median	0.83233	0.99733	6.6554	3	0	Plateau	1.0239	0.96612	11.338	2	0	Median	0.97687	1.0255	40.192	4	2	Median	7093800000	3512800000	3581000000	723120000	326110000	397020000	2130300000	1125800000	1004500000	1564100000	715810000	848260000	2676300000	1345100000	1331100000	26082	3851	24703	162969;162970;162971;162972;162973;162974;162975;162976;162977;162978;162979;162980	220592;220593;220594;220595;220596;220597;220598;220599;220600;220601;220602;220603;220604;220605;220606;220607;220608	220596			17	
ISGWTQALPDMVVSHLFGK	1	Oxidation (M)	2101.0666	0.066646362	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	8.2	6.37			3						2	3	1		1	97.872	94.109	3	3.6963E-09	83829	160511_QHF_FH_JSI10i_3	113.54	104.5			0.60879	0.67046	18.235	5	5	Median	0.90091	0.72057	25.668	3	3	Median	0.57117	0.67046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60879	0.63785	NaN	1	1	Median	551070000	341380000	209690000	310940000	167080000	143860000	202830000	146930000	55898000	0	0	0	37301000	27362000	9939700	26083	3851	24703	162981;162982;162983;162984;162985	220609;220610;220611;220612;220613	220609		2301	5	
ISHATEELETYRK	1	Unmodified	1575.7893	0.78928553	4195	Q96PC5;A4FU28	MIA2;CTAGE9	Melanoma inhibitory activity protein 2;cTAGE family member 9	yes	no	0	0	0	1			By MS/MS		3	0			1									1		22.336	22.336	3	0.037501	18849	160511_QHF_FH_JSI11i_3	30.567	17.587			1.7764	1.6994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7764	1.6994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29916000	11017000	18900000	0	0	0	0	0	0	29916000	11017000	18900000	0	0	0	26084	4195	24704	162986	220614	220614			1	
ISHGEVLEWQK	1	Unmodified	1324.6776	0.67755023	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	38.305	37.915	2;3	4.4448E-06	33142	160511_QHF_FH_JSI11i_3	89.403	72.871			1.2004	1.1471	14.081	6	0	Median	1.395	1.2166	NaN	1	0	Median	0.89688	1.0816	NaN	1	0	Median	1.4503	1.3652	2.345	2	0	Median	1.0028	1.0174	6.5239	2	0	Median	1120000000	455790000	664170000	133450000	53380000	80071000	145320000	73346000	71972000	393310000	160640000	232670000	447880000	168420000	279450000	26085	4521	24705	162987;162988;162989;162990;162991;162992	220615;220616;220617;220618;220619;220620;220621;220622;220623;220624;220625	220618			11	
ISHLFFHK	1	Unmodified	1027.5603	0.56033563	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	2	3	3	3	37.284	31.965	2;3	0.00065069	25448	160511_QHF_FH_JSI12i_3	70.919	46.764			0.7793	0.77553	41.875	9	3	Median	0.87716	0.72792	64.192	2	0	Median	0.45186	0.53474	NaN	1	0	Median	0.85794	0.84127	55.698	3	3	Median	0.69473	0.68935	10.362	3	0	Plateau	483950000	281770000	202180000	105980000	66152000	39831000	6157400	3559500	2597900	169380000	108270000	61104000	202440000	103790000	98649000	26086	3922	24706	162993;162994;162995;162996;162997;162998;162999;163000;163001;163002;163003	220626;220627;220628;220629;220630;220631;220632;220633;220634;220635;220636;220637;220638;220639;220640;220641;220642	220638			17	
ISHLPLVEELR	0	Unmodified	1304.7452	0.74523587	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	2	3	62.838	62.047	2;3	4.7672E-08	53162	160511_QHF_FH_JSI12i_3	115.91	100.77			0.85625	0.92163	6.4854	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85625	0.92163	6.4854	2	1	Median	602850000	333780000	269060000	0	0	0	0	0	0	0	0	0	602850000	333780000	269060000	26087	1674	24707	163004;163005;163006;163007;163008;163009	220643;220644;220645;220646;220647;220648	220648			5	
ISHLSGSGSGDER	0	Unmodified	1300.6008	0.60075648	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.5187	7.5676	2	0.00019877	5296	160511_QHF_FH_JSI11i_3	80.706	50.094			1.0705	1.0491	4.9233	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1446	1.0862	NaN	1	0	Median	1.0012	1.0132	NaN	1	0	Median	97411000	47714000	49696000	0	0	0	0	0	0	60888000	26143000	34744000	36523000	21571000	14952000	26088	4254	24708	163010;163011	220649;220650;220651	220650			3	
ISHLVLPVQPENALK	1	Unmodified	1656.9563	0.95629128	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	4	2	68.516	68.084	2;3	1.457E-11	60432	160511_QHF_FH_JSI11i_3	107.85	82.992			1.2857	1.1394	21.289	6	1	Median	1.3025	1.1009	NaN	1	0	Median	0.86116	1.0557	NaN	1	0	Median	1.2692	1.1793	29.738	3	1	Median	1.3175	1.3526	NaN	1	0	Median	1126800000	532260000	594530000	90417000	37577000	52840000	162430000	89333000	73101000	568930000	273710000	295220000	305010000	131640000	173370000	26089	2906	24709	163012;163013;163014;163015;163016;163017;163018;163019;163020;163021	220652;220653;220654;220655;220656;220657;220658;220659;220660;220661	220655			10	
ISHQNYIAYQK	1	Unmodified	1363.6884	0.68844927	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	3	2	22.68	22.313	2;3	3.6287E-06	18332	160511_QHF_FH_JSI12i_3	88.596	84.416			1.1895	1.2074	20.164	7	4	Median	1.4496	1.2074	NaN	1	1	Median	1.0959	1.2275	NaN	1	0	Median	1.1895	1.1188	32.774	3	3	Median	1.2229	1.2454	15.181	2	0	Median	362070000	155520000	206540000	13353000	4019400	9334000	21658000	12596000	9062400	180140000	79008000	101130000	146920000	59900000	87018000	26090	3331	24710	163022;163023;163024;163025;163026;163027;163028	220662;220663;220664;220665;220666;220667;220668;220669;220670;220671;220672;220673	220671			12	
ISHVSTSSVK	1	Unmodified	1043.5611	0.56112349	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			4						2	1		2	3	11.234	8.5306	2;3	1.8892E-05	6999	160511_QHF_FH_JSI12i_3	82.261	60.797			1.0404	1.0015	29.876	6	1	Median	1.2054	1.0341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82745	0.79042	38.317	2	1	Median	0.69872	0.71537	34.166	3	0	Plateau	676540000	388440000	288100000	7573500	3101600	4471900	0	0	0	109490000	58570000	50925000	559470000	326770000	232710000	26091	280	24711	163029;163030;163031;163032;163033;163034	220674;220675;220676;220677;220678	220678			5	
ISHVVVEDTVVSDK	1	Unmodified	1525.7988	0.79878758	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	38.416	38.236	2;3	8.6774E-05	32588	160511_QHF_FH_JSI12i_3	77.42	71.188			1.3628	1.3772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3628	1.3772	NaN	1	0	Median	55766000	21633000	34134000	0	0	0	0	0	0	0	0	0	55766000	21633000	34134000	26092	3282	24712	163035;163036	220679;220680	220680			2	
ISHWDGVIR	0	Unmodified	1081.5669	0.56687757	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	35.435	34.907	3	2.5194E-05	29492	160511_QHF_FH_JSI12i_3	79.489	62.268			0.89128	0.90852	19.478	3	0	Plateau	1.4669	1.2097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89902	0.83392	NaN	1	0	Median	0.89128	0.90852	NaN	1	0	Median	272610000	148530000	124090000	31553000	13398000	18155000	0	0	0	99272000	55006000	44266000	141790000	80124000	61665000	26093	4424	24713	163037;163038;163039	220681;220682	220682			2	
ISIEDVDEPPVFSR	0	Unmodified	1601.7937	0.7937022	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	78.792	78.214	2	0.0011467	71286	160511_QHF_FH_JSI11i_1	96.64	81.95			0.97383	1.0351	22.111	3	2	Median	0.93519	0.76828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2388	1.1833	NaN	1	1	Median	0.97383	1.0351	NaN	1	1	Median	126150000	58369000	67780000	35934000	17512000	18422000	0	0	0	47276000	20746000	26531000	42938000	20111000	22827000	26094	5745	24714	163040;163041;163042	220683;220684;220685;220686	220683			4	
ISIEMHGTLEDQLSHLR	0	Unmodified	1977.9942	0.9942097	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	74.628	74.434	3;4	3.3821E-05	64561	160511_QHF_FH_JSI12i_3	75.018	68.29			1.2953	1.3012	41.612	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7885	2.5308	NaN	1	0	Median	1.2304	1.2375	7.1006	2	0	Median	173460000	79618000	93840000	0	0	0	0	0	0	33120000	14172000	18948000	140340000	65446000	74891000	26095	1021	24715	163043;163044;163045	220687;220688;220689;220690;220691	220688			5	
ISIEMNGTLEDQLSHLK	1	Unmodified	1926.9721	0.97207728	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.761	85.08	3	1.1821E-06	74892	160511_QHF_FH_JSI9i_2	80.316	65.742			0.77292	0.90454	70.722	4	0	Median	0.48315	0.40484	NaN	1	0	Median	0.52704	0.64974	NaN	1	0	Median	1.9968	2.0071	NaN	1	0	Median	1.1335	1.2593	NaN	1	0	Median	422240000	219560000	202680000	74490000	53680000	20810000	71725000	46263000	25462000	132480000	41731000	90745000	143550000	77886000	65666000	26096	361	24716	163046;163047;163048;163049	220692;220693;220694;220695	220693			4	
ISIENEQLVIGSYSQPSDSWDK	1	Unmodified	2494.1864	0.18636339	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	85.825	85.332	2;3	1.3835E-06	77585	160511_QHF_FH_JSI10i_1	76.85	69.619			0.40973	0.42595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40973	0.42595	NaN	1	1	Median	41248000	25496000	15753000	0	0	0	0	0	0	0	0	0	41248000	25496000	15753000	26097	2306	24717	163050;163051	220696;220697;220698	220698			3	
ISIFNEHK	1	Unmodified	986.51853	0.5185304	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	32.119	31.395	3	0.0058091	25787	160511_QHF_FH_JSI9i_3	42.864	24.956			0.92518	0.90649	10.814	4	0	Median	1.1299	0.91871	NaN	1	0	Median	0.93422	1.0881	NaN	1	0	Median	0.91623	0.84677	NaN	1	0	Median	0.89278	0.89443	NaN	1	0	Median	440180000	195800000	244380000	77443000	39022000	38420000	121760000	49194000	72570000	90122000	36458000	53665000	150860000	71130000	79725000	26098	2352	24718	163052;163053;163054;163055	220699;220700;220701;220702;220703	220701			5	
ISIGNVVK	1	Unmodified	828.5069	0.50690308	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	44.631	44.033	2	0.007058	38650	160511_QHF_FH_JSI11i_3	60.682	19.18			1.1076	1.1708	11.533	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1076	1.289	NaN	1	0	Median	1.0799	1.0245	NaN	1	0	Median	1.1324	1.1708	NaN	1	0	Median	860590000	417620000	442970000	0	0	0	122140000	65944000	56198000	287570000	121210000	166360000	450880000	230470000	220410000	26099	5616	24719	163056;163057;163058	220704;220705;220706;220707	220705			4	
ISINQALQHAFIQEK	1	Unmodified	1738.9366	0.93661847	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			77.754	76.346	3	9.9847E-05	62797	160511_QHF_FH_JSI9i_3	72.634	60.468			0.69324	0.65876	12.398	2	0	Median	0.88153	0.71912	NaN	1	0	Median	0.54517	0.60347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67822000	40447000	27375000	37451000	20814000	16637000	30371000	19632000	10738000	0	0	0	0	0	0	26100	2432	24720	163059;163060	220708;220709;220710	220710			3	
ISINQTPGK	1	Unmodified	956.5291	0.52909508	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.585	24.254	2	0.0084411	21211	160511_QHF_FH_JSI10i_1	52.255	26.361			0.70151	0.76241	7.9628	3	1	Median	NaN	NaN	NaN	0	0	Median	0.70151	0.82149	NaN	1	0	Median	0.79139	0.76241	NaN	1	1	Median	0.68907	0.70062	NaN	1	0	Median	394390000	231700000	162690000	0	0	0	160140000	102410000	57727000	105330000	50185000	55141000	128930000	79105000	49822000	26101	3799	24721	163061;163062;163063	220711;220712;220713	220713			3	
ISIPDVDLDLK	1	Unmodified	1226.6758	0.6758189	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	87.525	87.204	2	0.00010188	79629	160511_QHF_FH_JSI12i_1	86.898	58.499			0.82266	0.89085	14.757	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74905	0.89085	NaN	1	0	Median	0.82266	0.78717	NaN	1	0	Median	1.0283	1.0561	NaN	1	0	Median	100570000	54710000	45861000	0	0	0	44948000	25574000	19373000	21376000	12117000	9258600	34247000	17018000	17229000	26102	2286	24722	163064;163065;163066	220714;220715;220716;220717;220718;220719;220720;220721;220722	220719			9	
ISIPDVGLHLK	1	Unmodified	1190.7023	0.70230842	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	3	3	4	74.686	73.835	2;3	1.2299E-06	62110	160511_QHF_FH_JSI10i_3	94.616	75.373			1.0963	1.0684	12.364	13	1	Median	1.0881	0.91935	19.896	3	0	Plateau	0.8342	0.98152	9.7977	3	0	Plateau	1.0963	1.0684	4.0496	3	0	Median	1.1439	1.216	14.058	4	1	Median	1999600000	987200000	1012400000	159090000	77207000	81885000	259200000	129630000	129570000	727380000	354750000	372630000	853920000	425620000	428300000	26103	2286	24723	163067;163068;163069;163070;163071;163072;163073;163074;163075;163076;163077;163078;163079	220723;220724;220725;220726;220727;220728;220729;220730;220731;220732;220733;220734;220735;220736;220737;220738;220739;220740;220741;220742;220743;220744;220745;220746;220747;220748;220749;220750;220751;220752;220753;220754;220755;220756;220757;220758;220759;220760	220736			38	
ISIPNNVK	1	Unmodified	883.51272	0.51271674	5218	Q9P2L0	WDR35	WD repeat-containing protein 35	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				26.871	25.613	2	0.030812	22022	160511_QHF_FH_JSI9i_1	41.502	10.213			0.98935	0.82227	NaN	1	0	Median	0.98935	0.82227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98210000	44149000	54061000	98210000	44149000	54061000	0	0	0	0	0	0	0	0	0	26104	5218	24724	163080	220761	220761			1	
ISIPVDISDSDMMLNIINSSITTK	1	Unmodified	2606.3183	0.31830554	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.596	6	8	1							2	4	4	5	102.48	102.4	2;3	9.1051E-190	88292	160511_QHF_FH_JSI12i_2	377.76	362.61			0.91192	0.96037	16.674	15	1	Median	1.0674	0.92795	2.7558	2	0	Median	0.75719	0.92769	14.32	4	1	Median	1.0934	1.1035	15.493	4	0	Median	0.91192	0.96037	19.493	5	0	Median	4138700000	2127200000	2011500000	559090000	263420000	295670000	1207500000	663340000	544210000	1276200000	599230000	676990000	1095800000	601240000	494580000	26105	1655	24725	163081;163082;163083;163084;163085;163086;163087;163088;163089;163090;163091;163092;163093;163094;163095	220762;220763;220764;220765;220766;220767;220768;220769;220770;220771;220772;220773;220774;220775;220776;220777;220778;220779;220780	220766			19	
ISIVEALTLLNNHK	1	Unmodified	1563.8984	0.89844205	5176	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	2	2	97.518	94.463	2;3	9.0099E-82	87821	160511_QHF_FH_JSI12i_3	247.88	200.69			0.93673	0.91379	11.441	7	1	Median	1.1134	0.91643	0.40902	2	0	Median	0.80622	0.93704	19.779	2	0	Median	1.0143	0.93689	NaN	1	0	Median	0.76734	0.80514	9.8432	2	1	Median	2420800000	1204500000	1216300000	645650000	262770000	382880000	633590000	332840000	300750000	371050000	167660000	203390000	770490000	441210000	329280000	26106	5176	24726	163096;163097;163098;163099;163100;163101;163102;163103;163104	220781;220782;220783;220784;220785;220786;220787;220788;220789;220790;220791;220792;220793;220794;220795	220791			15	
ISKLYGDLK	2	Acetyl (K)	1077.607	0.60701105	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	59.848	49.053	2	0.0086083	26968	160513_QHF_FH_JSI10Kac_4	64.103	42.639			0.90412	0.99006	44.46	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97973	1.175	NaN	1	0	Median	0.51674	0.50662	NaN	1	0	Median	0.90412	0.99006	NaN	1	0	Median	42350000	24182000	18168000	0	0	0	17230000	8717100	8513000	14417000	9888600	4528200	10703000	5575900	5127000	26107	1367	24727	163105;163106;163107	220796;220797;220798;220799	220796	1301;1302		4	
ISKPAPYWEGTAVIDGEFK	2	Unmodified	2107.0626	0.062606842	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	75.005	74.862	3	1.7698E-08	64947	160511_QHF_FH_JSI12i_3	110.77	100.6			0.99442	0.98947	11.504	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95042	0.91217	NaN	1	0	Median	1.0405	1.0733	NaN	1	0	Median	187890000	77926000	109970000	0	0	0	0	0	0	54449000	24021000	30428000	133440000	53905000	79539000	26108	2364	24728	163108;163109	220800;220801;220802;220803	220803			4	
ISKPGAVSTPVK	2	Unmodified	1182.6972	0.69722304	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	22.641	22.007	3	0.01316	18032	160511_QHF_FH_JSI12i_3	39.033	29.029			1.022	0.89997	28.613	4	0	Median	0.93508	0.76515	NaN	1	0	Median	0.64172	0.75675	NaN	1	0	Median	1.117	1.0585	NaN	1	0	Median	1.3601	1.373	NaN	1	0	Median	532210000	264690000	267510000	134590000	62416000	72179000	95969000	53573000	42395000	125580000	54024000	71551000	176070000	94677000	81389000	26109	2253	24729	163110;163111;163112;163113	220804;220805;220806;220807;220808	220807			5	
ISLADIAQK	1	Unmodified	957.5495	0.54949617	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.685	5	3	1							3	2	3	1	57.292	56.448	2	0.0016808	49960	160511_QHF_FH_JSI10i_2	67.993	18.575			0.883	0.9392	91.52	7	2	Median	0.87508	0.74684	125.77	3	1	Median	0.82058	0.99238	7.7884	2	0	Median	1.193	1.1667	11.113	2	1	Median	NaN	NaN	NaN	0	0	Median	1007600000	561940000	445640000	358600000	232070000	126530000	296770000	136140000	160630000	352200000	193730000	158470000	0	0	0	26110	313	24730	163114;163115;163116;163117;163118;163119;163120;163121;163122	220809;220810;220811;220812;220813;220814;220815;220816;220817;220818;220819;220820;220821;220822	220822			14	
ISLAIPNLGNTSQQEYK	1	Unmodified	1874.9738	0.97379183	2602	Q15018	FAM175B	BRISC complex subunit Abro1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	79.527	78.897	2	0.00037929	69269	160511_QHF_FH_JSI11i_2	66.498	51.936			0.74338	0.73244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74338	0.73244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12365000	6030000	6335100	0	0	0	0	0	0	12365000	6030000	6335100	0	0	0	26111	2602	24731	163123;163124;163125	220823;220824;220825;220826	220825			4	
ISLAPTDVK	1	Unmodified	942.5386	0.53859714	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	42.453	41.685	2	0.0020756	37590	160511_QHF_FH_JSI11i_1	66.27	27.308			1.1029	0.9953	20.686	6	1	Median	1.1795	0.98323	0.53172	2	0	Median	0.85777	1.0173	18.956	2	0	Median	1.0368	1.0037	NaN	1	0	Median	1.4812	1.5864	NaN	1	1	Median	1043500000	465360000	578120000	206640000	81790000	124850000	290600000	151870000	138730000	280780000	122430000	158350000	265470000	109270000	156200000	26112	3801	24732	163126;163127;163128;163129;163130;163131	220827;220828;220829;220830;220831;220832	220828			6	
ISLDQIDLLSTK	1	Unmodified	1344.75	0.75004648	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		88.653	88.422	2	0.0015387	80246	160511_QHF_FH_JSI10i_1	61.932	44.496			1.0566	1.1393	1.5841	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95122	1.1522	NaN	1	0	Median	1.1736	1.1266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101510000	52041000	49468000	0	0	0	65384000	34184000	31201000	36124000	17857000	18267000	0	0	0	26113	1670	24733	163132;163133	220833;220834	220834			2	
ISLEDIQAFEK	1	Unmodified	1291.666	0.66598249	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	81.434	80.812	2	6.4514E-05	71056	160511_QHF_FH_JSI11i_2	93.096	63.352			0.99853	1.0544	11.06	8	2	Median	1.3199	1.114	13.519	2	1	Median	0.90543	1.079	3.121	2	1	Median	1.0857	1.0705	2.2791	2	0	Median	0.84625	0.90499	11.562	2	0	Median	503720000	246710000	257010000	94781000	38703000	56078000	108840000	60031000	48811000	181010000	87170000	93838000	119090000	60809000	58278000	26114	3814	24734	163134;163135;163136;163137;163138;163139;163140;163141	220835;220836;220837;220838;220839;220840;220841;220842;220843;220844;220845	220843			11	
ISLGLPVGAVINCADNTGAK	1	Unmodified	1969.0303	0.030260856	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.75	9	8	4							3	5	7	6	91.852	91.528	2;3	8.9921E-33	79325	160511_QHF_FH_JSI12i_3	187.37	175.01			0.86145	0.87017	47.508	18	7	Median	0.49788	0.43813	43.985	3	1	Median	0.66179	0.82037	27.312	4	2	Median	0.72601	0.71509	25.801	6	2	Median	1.404	1.43	31.425	5	2	Median	1844600000	938020000	906620000	192510000	114310000	78198000	424050000	229680000	194370000	801570000	394420000	407150000	426510000	199610000	226900000	26115	2022	24735	163142;163143;163144;163145;163146;163147;163148;163149;163150;163151;163152;163153;163154;163155;163156;163157;163158;163159;163160;163161;163162	220846;220847;220848;220849;220850;220851;220852;220853;220854;220855;220856;220857;220858;220859;220860;220861;220862;220863;220864;220865;220866;220867;220868;220869;220870;220871;220872;220873;220874;220875;220876;220877;220878;220879;220880;220881;220882;220883	220881			38	
ISLGMPVGPNAHK	1	Unmodified	1319.702	0.70199085	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	50.117	49.267	2;3	6.748E-08	43461	160511_QHF_FH_JSI11i_3	140.45	107.07			0.99252	0.99485	6.749	8	0	Median	1.3088	1.0522	4.0528	2	0	Median	0.91647	1.0477	9.9864	2	0	Median	1.0395	0.98896	3.5085	2	0	Median	0.90976	0.93389	0.93084	2	0	Median	6094000000	2927700000	3166300000	1142500000	486870000	655630000	1141400000	535110000	606290000	1630400000	795320000	835050000	2179800000	1110400000	1069400000	26116	2412	24736	163163;163164;163165;163166;163167;163168;163169;163170	220884;220885;220886;220887;220888;220889;220890;220891;220892;220893;220894;220895;220896;220897	220886			14	
ISLGMPVGPNAHK	1	Oxidation (M)	1335.6969	0.69690547	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			4							2	2			35.059	33.627	2;3	0.0022074	27361	160511_QHF_FH_JSI9i_3	62.823	52.299			1.1151	1.0786	26.119	4	0	Median	1.0729	0.86228	16.472	2	0	Median	1.1151	1.2958	10.769	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	405630000	171830000	233800000	217170000	83533000	133630000	188460000	88294000	100170000	0	0	0	0	0	0	26117	2412	24736	163171;163172;163173;163174	220898;220899;220900;220901;220902;220903;220904	220904		1947	7	
ISLIQIFR	0	Unmodified	988.60695	0.60695147	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		86.46	77.493	2	0.0031949	43128	160513_QHF_FH_JSI11Kac_6	87.251	47.048			1.1895	1.0726	6.0744	2	0	Median	1.2208	1.0275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.159	1.1196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243060000	108470000	134590000	139590000	60808000	78777000	0	0	0	103470000	47664000	55808000	0	0	0	26118	3101	24737	163175;163176	220905	220905			1	
ISLISEK	1	Unmodified	788.46437	0.46436956	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	36.126	35.36	2	0.06099	30157	160511_QHF_FH_JSI12i_2	40.778	5.1599			0.89575	0.84009	25.349	4	0	Median	0.94959	0.82415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0522	1.043	27.886	2	0	Median	0.62424	0.69839	NaN	1	0	Median	305700000	166780000	138920000	78411000	42205000	36206000	0	0	0	156220000	85784000	70441000	71065000	38791000	32274000	26119	3203	24738	163177;163178;163179;163180	220906	220906			1	
ISLLKPSTK	2	Unmodified	985.61718	0.61718181	435	O60671	RAD1	Cell cycle checkpoint protein RAD1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			32.338	30.939	3	0.011521	25748	160511_QHF_FH_JSI10i_3	41.54	13.527			0.64711	0.64532	5.1179	2	2	Median	0.81833	0.6691	NaN	1	1	Median	0.51172	0.62238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195800000	90746000	105050000	114950000	50263000	64686000	80848000	40483000	40364000	0	0	0	0	0	0	26120	435	24739	163181;163182;163183	220907;220908;220909	220908			3	
ISLLNEGQKER	1	Acetyl (K)	1327.7096	0.70957864	32	H3BPF8;Q0D2H9;Q08AF8;A6NN73	GOLGA8S;GOLGA8DP;GOLGA8F;GOLGA8CP	Putative golgin subfamily A member 8D;Putative golgin subfamily A member 8F/8G;Golgin subfamily A member 8C	yes	no	1	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	76.729	68.295	2	1.8733E-05	35687	160513_QHF_FH_JSI12Kac_6	103.55	53.831			1.2095	1.0947	40.587	4	1	Median	1.4257	1.2273	NaN	1	0	Median	0.49751	0.59011	NaN	1	1	Median	1.0432	0.97643	NaN	1	0	Median	1.4023	1.5189	NaN	1	0	Median	396560000	205950000	190610000	110590000	48363000	62230000	164260000	105040000	59218000	62940000	29727000	33214000	58772000	22819000	35953000	26121	32	24740	163184;163185;163186;163187	220910;220911;220912	220911	6		3	
ISLNTLTLNVK	1	Unmodified	1214.7234	0.72343779	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.796	75.511	2	0.0020479	65547	160511_QHF_FH_JSI12i_3	73.887	45.19			0.9244	0.92225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9244	0.92225	NaN	1	1	Median	103160000	48786000	54375000	0	0	0	0	0	0	0	0	0	103160000	48786000	54375000	26122	590	24741	163188	220913	220913			1	
ISLPEAMQLLQDR	0	Unmodified	1512.797	0.79701344	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.23	100.23	2	0.046291	89234	160511_QHF_FH_JSI11i_3	46.706	17.979			0.70227	0.63901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70227	0.63901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40647000	24824000	15823000	0	0	0	0	0	0	40647000	24824000	15823000	0	0	0	26123	2795	24742	163189	220914	220914			1	
ISLPGQMAGTPITPLK	1	Unmodified	1622.9066	0.90656389	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.62	0.484		3	5							1		3	4	81.225	80.838	2;3	6.5046E-07	70199	160511_QHF_FH_JSI12i_3	125.03	80.608			1.1321	1.0821	14.996	8	3	Median	1.1471	0.985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0324	1.0419	12.419	3	1	Plateau	1.1321	1.1391	18.31	4	2	Median	453840000	200780000	253050000	37371000	17309000	20061000	0	0	0	184930000	84875000	100050000	231540000	98600000	132940000	26124	4793	24743	163190;163191;163192;163193;163194;163195;163196;163197	220915;220916;220917;220918;220919;220920;220921;220922;220923;220924	220924			10	
ISLPGQMAGTPITPLK	1	Oxidation (M)	1638.9015	0.90147851	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	70.646	70.348	2	0.00090319	62761	160511_QHF_FH_JSI11i_3	70.488	51.246			0.97006	1.0036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97006	1.0036	NaN	1	1	Median	14781000	6158500	8622800	0	0	0	0	0	0	0	0	0	14781000	6158500	8622800	26125	4793	24743	163198;163199	220925;220926	220925		2531	2	
ISLPLPNFSSLNLR	0	Unmodified	1569.8879	0.88787736	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2.75	0.433		1	3							1	2	1		101.56	101.46	2	1.0393E-06	90003	160511_QHF_FH_JSI10i_2	135.66	92.15			0.99969	1.025	3.2477	4	0	Median	1.2909	1.044	NaN	1	0	Median	0.89065	1.0401	4.6663	2	0	Median	1.0444	1.0044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1154300000	547260000	607040000	408460000	177980000	230480000	576340000	303320000	273020000	169500000	65949000	103550000	0	0	0	26126	913	24744	163200;163201;163202;163203	220927;220928;220929;220930	220929			4	
ISLPVILMDETLK	1	Unmodified	1470.8368	0.83675299	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.8	101.69	2	2.626E-15	87559	160511_QHF_FH_JSI12i_2	160.18	124.96			1.031	1.1381	24.238	4	0	Median	1.6283	1.4069	NaN	1	0	Median	1.0971	1.3321	NaN	1	0	Median	0.96889	0.97227	NaN	1	0	Median	0.79338	0.85299	NaN	1	0	Median	875950000	447070000	428870000	135060000	53809000	81250000	259370000	128570000	130800000	245210000	127870000	117330000	236310000	136820000	99492000	26127	1103	24745	163204;163205;163206;163207	220931;220932;220933;220934	220931			4	
ISLQAIQQLVR	0	Unmodified	1267.7612	0.76122028	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	90.104	89.538	2	3.183E-07	74752	160511_QHF_FH_JSI10i_3	119.75	80.971			0.83608	0.82534	11.249	4	0	Median	0.98655	0.79572	NaN	1	0	Median	0.72429	0.85605	NaN	1	0	Median	0.96512	0.91259	NaN	1	0	Median	0.66107	0.70215	NaN	1	0	Median	153090000	85669000	67420000	54736000	30338000	24398000	56230000	30711000	25519000	29304000	17462000	11842000	12819000	7158200	5660400	26128	558	24746	163208;163209;163210;163211	220935;220936;220937;220938	220936			4	
ISLQDHLDKAKK	3	2 Acetyl (K)	1478.8093	0.80929269	1477	P38567	SPAM1	Hyaluronidase PH-20	yes	yes	2	0	0	2		By MS/MS			16	0									1		1			95.515	89.794	3	0.0023394	51824	160513_QHF_FH_JSI10Kac_6	54.7	10.084			0.92452	1.1021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92452	1.1021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38781000	17295000	21486000	0	0	0	38781000	17295000	21486000	0	0	0	0	0	0	26129	1477	24747	163212	220939	220939	1464;1465		1	
ISLSTLQQQLGQPEK	1	Unmodified	1668.9046	0.90464964	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	3	1	1	73.866	73.4	2	1.5848E-14	63691	160511_QHF_FH_JSI12i_3	183.79	149.83			1.1872	1.1201	11.947	4	0	Median	1.1708	1.0218	NaN	1	0	Median	0.83986	1.0321	NaN	1	0	Median	1.3897	1.2982	NaN	1	0	Median	1.2038	1.2156	NaN	1	0	Median	147930000	61592000	86334000	24054000	12614000	11440000	18942000	9203700	9738100	49527000	19916000	29611000	55403000	19858000	35545000	26130	5675	24748	163213;163214;163215;163216;163217;163218	220940;220941;220942;220943;220944;220945;220946;220947;220948;220949;220950	220948			11	
ISLTQAGLEALFESNLLDDLK	1	Unmodified	2289.2104	0.21039329	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				103.11	103.04	3	6.2833E-06	90917	160511_QHF_FH_JSI9i_2	86.546	71.457			1.4067	1.2275	NaN	1	1	Median	1.4067	1.2275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24051000	9391800	14659000	24051000	9391800	14659000	0	0	0	0	0	0	0	0	0	26131	2730	24749	163219	220951	220951			1	
ISMAAYVSGELEHVTR	0	Unmodified	1761.872	0.8719693	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.862	79.862	3	0.00019947	71342	160511_QHF_FH_JSI11i_3	62.94	52.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26132	1129	24750	163220	220952	220952			1	
ISMINNPAK	1	Unmodified	986.5219	0.52190122	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				32.048	31.006	2	0.0028385	26964	160511_QHF_FH_JSI9i_2	62.464	27.572			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26133	5135	24751	163221	220953	220953			1	
ISMPDFDLHLK	1	Oxidation (M)	1330.6591	0.65912298	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	61.961	61.485	3	0.00014162	52467	160511_QHF_FH_JSI12i_3	70.488	62.356			1.3326	1.3065	10.008	7	0	Median	1.4808	1.2937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5179	1.4338	15.731	3	0	Plateau	1.3463	1.3186	3.0038	3	0	Plateau	473900000	193180000	280730000	15227000	6080900	9146300	0	0	0	206750000	80487000	126270000	251930000	106610000	145320000	26134	2286	24752	163222;163223;163224;163225;163226;163227;163228	220954;220955;220956;220957;220958;220959;220960	220958		1887	6	
ISMPDFDLHLK	1	Unmodified	1314.6642	0.66420836	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.08		11	7						1	5	4	6	4	80.935	80.024	2;3	5.0245E-08	71372	160511_QHF_FH_JSI11i_3	100.69	97.568			0.83846	1.4566	27.413	18	7	Linear	0.96212	0.83415	13.656	5	3	Median	0.80444	0.95556	15.732	4	1	Median	0.75558	0.72848	33.732	5	3	Median	1.0207	1.1023	27.765	4	0	Median	3945800000	1909300000	2036500000	351470000	171720000	179750000	420320000	232240000	188080000	1512200000	758030000	754170000	1661800000	747330000	914470000	26135	2286	24752	163229;163230;163231;163232;163233;163234;163235;163236;163237;163238;163239;163240;163241;163242;163243;163244;163245;163246;163247	220961;220962;220963;220964;220965;220966;220967;220968;220969;220970;220971;220972;220973;220974;220975;220976;220977;220978;220979;220980;220981;220982;220983;220984;220985;220986;220987;220988;220989;220990;220991;220992;220993;220994;220995;220996;220997;220998;220999;221000;221001;221002;221003;221004;221005;221006;221007;221008	220962			48	
ISMPDFDLNLK	1	Unmodified	1291.6482	0.64822394	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.772	7	5	3							2	3	4	6	83.246	82.801	2	2.667E-07	78835	160511_QHF_FH_JSI9i_2	120.99	16.788			0.93984	0.9608	23.811	11	5	Median	1.2396	1.0481	28.144	2	1	Median	0.70597	0.8546	41.084	3	1	Plateau	0.93984	0.91376	7.5152	3	1	Median	0.67727	0.74255	19.011	3	2	Plateau	513340000	269500000	243840000	115300000	51468000	63836000	166370000	88912000	77454000	128850000	62734000	66120000	102820000	66387000	36434000	26136	2286	24753	163248;163249;163250;163251;163252;163253;163254;163255;163256;163257;163258;163259;163260;163261;163262	221009;221010;221011;221012;221013;221014;221015;221016;221017;221018;221019;221020;221021;221022;221023;221024;221025;221026;221027;221028;221029	221022			21	
ISMPDIDFNLK	1	Unmodified	1291.6482	0.64822394	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	89.265	88.774	2	2.6226E-05	76653	160511_QHF_FH_JSI12i_2	99.815	15.602			1.1154	1.1221	26.163	5	1	Median	1.2611	1.1398	NaN	1	0	Median	1.2146	1.4603	43.208	2	1	Median	1.1154	1.1221	NaN	1	0	Median	0.97379	1.0902	NaN	1	0	Median	309860000	147180000	162680000	47761000	24858000	22904000	121750000	54536000	67212000	69018000	35440000	33578000	71336000	32346000	38990000	26137	2286	24754	163263;163264;163265;163266;163267;163268;163269	221030;221031;221032;221033;221034;221035;221036;221037;221038;221039;221040;221041	221032			12	
ISMPDIDLNLTGPK	1	Unmodified	1512.7858	0.78578005	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	3	2	5	90.533	90.082	2;3	7.9003E-05	81711	160511_QHF_FH_JSI10i_1	79.466	71.555			0.96694	0.99319	23.989	10	2	Median	1.2717	1.0775	10.494	2	0	Median	0.66736	0.8423	5.5567	3	0	Plateau	0.99128	0.98598	NaN	1	0	Median	1.1097	1.1342	27.035	4	2	Median	242140000	126010000	116130000	31820000	13262000	18558000	89963000	55265000	34698000	25925000	10087000	15838000	94430000	47391000	47039000	26138	2286	24755	163270;163271;163272;163273;163274;163275;163276;163277;163278;163279;163280;163281	221042;221043;221044;221045;221046;221047;221048;221049;221050;221051;221052;221053;221054;221055	221049			14	
ISMPDLDLHLK	1	Unmodified	1280.6799	0.67985842	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	78.14	77.432	3	3.6804E-05	69159	160511_QHF_FH_JSI11i_3	83.182	78.084			1.0391	0.98686	16.686	7	0	Median	1.1351	0.95013	11.913	2	0	Median	0.78884	0.98656	NaN	1	0	Median	1.0766	1.0424	14.631	2	0	Median	1.1371	1.1958	27.154	2	0	Median	712980000	329930000	383050000	74431000	35559000	38872000	95265000	55364000	39901000	266160000	126650000	139510000	277130000	112360000	164770000	26139	2286	24756	163282;163283;163284;163285;163286;163287;163288	221056;221057;221058;221059;221060;221061;221062;221063;221064;221065	221057			10	
ISMPDLDLNLK	1	Unmodified	1257.6639	0.663874	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.784	9	6	4							5	5	4	5	86.063	85.511	2	2.507E-10	77430	160511_QHF_FH_JSI10i_1	140.16	0			1.0208	1.1316	27.377	19	11	Median	1.1098	0.90387	38.077	5	4	Median	0.98659	1.1316	25.993	5	2	Median	1.0496	1.0513	16.282	4	2	Median	1.1788	1.2726	23.304	5	3	Median	2276400000	1041300000	1235200000	440680000	169200000	271480000	671080000	338340000	332740000	296480000	146290000	150180000	868190000	387440000	480750000	26140	2286	24757	163289;163290;163291;163292;163293;163294;163295;163296;163297;163298;163299;163300;163301;163302;163303;163304;163305;163306;163307	221066;221067;221068;221069;221070;221071;221072;221073;221074;221075;221076;221077;221078;221079;221080;221081;221082;221083;221084;221085;221086;221087;221088;221089;221090;221091;221092	221077			27	
ISMPDVDFNLK	1	Unmodified	1277.6326	0.63257388	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	82.433	81.822	2	0.00022383	74533	160511_QHF_FH_JSI11i_1	87.806	65.066			1.1114	1.1585	7.9171	7	1	Median	1.4231	1.1585	NaN	1	1	Median	0.92249	1.1243	7.1647	2	0	Median	1.1577	1.1396	9.3223	2	0	Median	1.0675	1.1537	15.125	2	0	Median	371190000	180940000	190250000	16471000	7721300	8750000	116270000	59809000	56456000	117270000	51476000	65796000	121180000	61933000	59251000	26141	2286	24758	163308;163309;163310;163311;163312;163313;163314	221093;221094;221095;221096;221097;221098;221099;221100;221101;221102;221103	221093			9	
ISMPDVDLHLK	1	Unmodified	1266.6642	0.66420836	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	2	6	4							2	3	3	4	70.357	69.66	2;3	1.4863E-05	61376	160511_QHF_FH_JSI9i_2	93.345	85.275			0.99138	0.94993	23.658	12	2	Median	1.0694	0.88661	0.18513	2	0	Median	0.76268	0.85032	27.52	3	0	Median	1.1157	1.0849	14.31	3	0	Median	1.0478	1.1134	22.602	4	2	Median	3202600000	1528800000	1673800000	342800000	148680000	194120000	656200000	371280000	284930000	865530000	373180000	492360000	1338100000	635650000	702420000	26142	2286	24759	163315;163316;163317;163318;163319;163320;163321;163322;163323;163324;163325;163326	221104;221105;221106;221107;221108;221109;221110;221111;221112;221113;221114;221115;221116;221117;221118;221119;221120;221121;221122;221123;221124;221125;221126;221127;221128	221114			24	
ISMPDVDLHLK	1	Oxidation (M)	1282.6591	0.65912298	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0				By MS/MS	3	0			1										1	50.228	49.993	3	0.0041223	42797	160511_QHF_FH_JSI12i_3	52.693	47.798			1.4207	1.4528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4207	1.4528	NaN	1	1	Median	67812000	32203000	35609000	0	0	0	0	0	0	0	0	0	67812000	32203000	35609000	26143	2286	24759	163327	221129	221129		1888	1	
ISMPDVDLHMK	1	Unmodified	1284.6206	0.62062898	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	64.449	63.798	3	2.4421E-05	55684	160511_QHF_FH_JSI11i_2	75.695	68.151			1.0263	1.0189	14.07	6	0	Median	1.0881	0.93153	NaN	1	0	Median	0.78368	0.96106	NaN	1	0	Median	1.0668	1.0243	12.59	2	0	Median	1.1259	1.2025	15.165	2	0	Median	676330000	338630000	337700000	87050000	40353000	46697000	135480000	83889000	51588000	257780000	129250000	128530000	196020000	85143000	110880000	26144	2286	24760	163328;163329;163330;163331;163332;163333	221130;221131;221132;221133;221134;221135;221136;221137;221138;221139;221140;221141;221142;221143;221144	221140			15	
ISMPDVDLHVK	1	Unmodified	1252.6486	0.64855829	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	63.919	63.276	3	2.2588E-05	53523	160511_QHF_FH_JSI12i_2	76.655	73.123			1.1049	1.0299	63.113	7	1	Median	1.2196	1.0299	NaN	1	0	Median	0.82366	1.0043	NaN	1	0	Median	0.96571	0.97428	91.532	3	1	Median	1.1711	1.2337	1.067	2	0	Median	631880000	309360000	322520000	71996000	34605000	37391000	127390000	65722000	61666000	225320000	120030000	105290000	207170000	88999000	118170000	26145	2286	24761	163334;163335;163336;163337;163338;163339;163340	221145;221146;221147;221148;221149;221150;221151;221152;221153;221154;221155;221156	221146			12	
ISMPDVDLNLK	1	Unmodified	1243.6482	0.64822394	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	79.452	78.861	2	0.0001066	70978	160511_QHF_FH_JSI11i_1	98.044	59.252			0.9377	0.96804	70.116	9	3	Median	2.1717	1.8226	98.458	2	0	Median	0.80924	0.96804	67.988	3	2	Median	0.79867	0.78502	64.031	2	1	Median	0.63283	0.66367	58.335	2	0	Median	560920000	326280000	234640000	57047000	25838000	31209000	220440000	121710000	98726000	130600000	83102000	47501000	152830000	95625000	57205000	26146	2286	24762	163341;163342;163343;163344;163345;163346;163347;163348;163349	221157;221158;221159;221160;221161;221162;221163;221164;221165	221157			9	
ISMPDVGLNLK	1	Unmodified	1185.6427	0.64274463	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	77.375	76.751	2	2.7019E-09	67431	160511_QHF_FH_JSI11i_2	128.36	90.634			0.84891	0.94741	5.725	7	1	Linear	1.0799	0.9391	NaN	1	0	Median	0.72589	0.88086	3.0701	2	0	Median	0.94039	0.91709	8.394	2	0	Median	0.82417	0.88989	8.9508	2	1	Median	643260000	340880000	302380000	105540000	49438000	56104000	171870000	97963000	73906000	190550000	106310000	84239000	175310000	87171000	88134000	26147	2286	24763	163350;163351;163352;163353;163354;163355;163356	221166;221167;221168;221169;221170;221171;221172;221173;221174;221175	221173			10	
ISMPDVNLNLK	1	Unmodified	1242.6642	0.66420836	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	76.43	76.07	2	0.0003149	68994	160511_QHF_FH_JSI10i_1	147.2	104.6			0.9687	1.059	55.35	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62693	0.71602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4968	1.5663	NaN	1	0	Median	170370000	93680000	76690000	0	0	0	119640000	72988000	46650000	0	0	0	50732000	20692000	30040000	26148	2286	24764	163357;163358	221176;221177	221177			2	
ISMPEIDLNLK	1	Unmodified	1271.6795	0.67952407	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	86.905	86.368	2	0.00015016	76209	160511_QHF_FH_JSI9i_2	83.456	54.04			0.77488	0.78856	13.332	6	2	Median	0.85176	0.75002	NaN	1	0	Median	0.63119	0.76112	10.422	2	1	Median	0.77335	0.75895	NaN	1	0	Median	0.89367	0.93603	13.552	2	1	Median	262660000	156520000	106140000	32487000	15733000	16754000	92541000	61704000	30838000	49910000	30038000	19872000	87720000	49042000	38678000	26149	2286	24765	163359;163360;163361;163362;163363;163364	221178;221179;221180;221181;221182;221183	221181			6	
ISMPEVDLNLK	1	Unmodified	1257.6639	0.663874	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	79.509	78.859	2	2.6226E-05	68075	160511_QHF_FH_JSI12i_2	99.815	7.9483			1.1231	1.1356	9.3485	6	5	Median	1.2153	1.0265	NaN	1	1	Median	0.94734	1.1309	9.5327	2	2	Median	1.2263	1.2316	NaN	1	1	Median	1.0798	1.1671	12.812	2	1	Median	572050000	275710000	296340000	52946000	23813000	29133000	207240000	104500000	102740000	104330000	47930000	56403000	207530000	99466000	108060000	26150	2286	24766	163365;163366;163367;163368;163369;163370	221184;221185;221186;221187;221188;221189;221190	221185			7	
ISMPGFK	1	Unmodified	778.40475	0.40474619	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	50.509	49.594	2	0.012437	42565	160511_QHF_FH_JSI12i_2	69.383	49.537			1.1801	1.1286	21.477	8	0	Median	1.4684	1.2167	29.424	2	0	Median	1.0231	1.228	40.513	2	0	Median	1.155	1.1355	11.627	2	0	Median	1.0017	1.0698	18.333	2	0	Median	3472900000	1575400000	1897500000	436880000	169910000	266970000	695830000	329400000	366430000	1125200000	541650000	583550000	1215000000	534440000	680570000	26151	2286	24767	163371;163372;163373;163374;163375;163376;163377;163378	221191;221192;221193;221194;221195;221196;221197;221198;221199;221200;221201;221202;221203	221192			13	
ISMPGFKGEGPDVDVNLPK	2	Unmodified	1999.0085	0.0084627814	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	77.035	76.477	3	0.00015291	66366	160511_QHF_FH_JSI12i_3	74.519	60.1			1.5348	1.5669	27.975	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.82377	0.9443	NaN	1	0	Median	1.5589	1.4947	NaN	1	1	Median	1.5348	1.5669	NaN	1	1	Median	502690000	233090000	269600000	0	0	0	74269000	39444000	34826000	178890000	83749000	95146000	249530000	109900000	139630000	26152	2286	24768	163379;163380;163381	221204;221205;221206	221206			3	
ISMPGFKGEGPEVDVNLPK	2	Unmodified	2013.0241	0.024112846	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	77.747	76.991	3	5.591E-06	64514	160511_QHF_FH_JSI10i_3	89.344	68.693			1.0241	0.97013	4.4351	6	0	Median	1.1308	0.95392	0.17771	2	0	Median	0.83857	0.98753	8.6385	2	0	Median	1.0702	0.98538	NaN	1	0	Median	0.98006	1.0076	NaN	1	0	Median	1046700000	539890000	506800000	100860000	46650000	54206000	197980000	110530000	87453000	362700000	198360000	164340000	385150000	184350000	200800000	26153	2286	24769	163382;163383;163384;163385;163386;163387	221207;221208;221209;221210;221211;221212;221213;221214;221215;221216	221209			10	
ISMQDVDLSLGSPK	1	Unmodified	1488.7494	0.74939455	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	4	2	2	74.025	73.514	2;3	3.4747E-06	65311	160511_QHF_FH_JSI9i_1	128.21	100.73			1.0218	1.0126	18.247	10	4	Median	1.1201	0.93632	13.771	3	2	Plateau	0.84256	0.98339	26.352	3	2	Median	1.1212	1.096	8.3448	2	0	Median	1.0218	1.0529	2.6453	2	0	Median	1343300000	661040000	682240000	325100000	154750000	170340000	502690000	250590000	252100000	305390000	158110000	147290000	210090000	97586000	112510000	26154	2286	24770	163388;163389;163390;163391;163392;163393;163394;163395;163396;163397;163398	221217;221218;221219;221220;221221;221222;221223;221224;221225;221226;221227;221228;221229	221227			12	
ISMQELEELRK	1	Unmodified	1374.7177	0.71770049	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	59.602	58.872	3	8.7415E-05	51646	160511_QHF_FH_JSI9i_2	73.632	57.099			0.85718	0.91289	4.7733	5	0	Median	1.0878	0.93581	NaN	1	0	Median	0.80854	0.94242	4.5021	2	0	Median	0.94461	0.89079	NaN	1	0	Median	0.85718	0.858	NaN	1	0	Median	427660000	211680000	215980000	44601000	14665000	29936000	98209000	54721000	43488000	195630000	99416000	96217000	89215000	42877000	46339000	26155	4398	24771	163399;163400;163401;163402;163403	221230;221231;221232;221233;221234;221235;221236;221237;221238;221239	221232			10	
ISMSEVDLNVAAPK	1	Unmodified	1472.7545	0.75447993	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.791	69.241	2;3	3.4189E-05	62695	160511_QHF_FH_JSI10i_1	71.933	66.561			0.94876	0.9232	14.741	8	5	Median	1.0779	0.88324	9.5184	2	2	Median	0.81363	0.94388	9.2122	2	1	Median	0.94876	0.92342	3.2958	2	1	Median	1.0543	1.085	29.353	2	1	Median	718820000	415420000	303400000	133380000	77680000	55697000	194210000	109620000	84587000	168520000	97864000	70660000	222710000	130260000	92455000	26156	2286	24772	163404;163405;163406;163407;163408;163409;163410;163411	221240;221241;221242;221243;221244;221245;221246;221247;221248;221249	221246			10	
ISMSHEEEPLGTAGPLALAR	0	Unmodified	2078.0466	0.046639202	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	69.631	69.139	2;3	3.841E-09	59838	160511_QHF_FH_JSI12i_3	110.56	103.33			0.93671	0.99665	13.285	4	0	Median	1.2591	1.0771	NaN	1	0	Median	0.89329	1.0707	NaN	1	0	Median	0.98223	0.92768	NaN	1	0	Median	0.81814	0.81508	NaN	1	0	Median	495410000	251490000	243910000	87181000	33615000	53566000	91423000	55529000	35894000	191680000	92765000	98913000	125120000	69585000	55538000	26157	5672	24773	163412;163413;163414;163415;163416	221250;221251;221252;221253;221254;221255;221256	221256			7	
ISMSHEEEPLGTAGPLALAR	0	Oxidation (M)	2094.0416	0.041553824	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	1	0			By MS/MS		3	0			2									2		60.117	60.117	3	0.00023113	53405	160511_QHF_FH_JSI11i_3	60.528	57.095			1.4413	1.3749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4413	1.3749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18992000	7063000	11929000	0	0	0	0	0	0	18992000	7063000	11929000	0	0	0	26158	5672	24773	163417;163418	221257;221258	221257		2729	2	
ISNDNPEEHVLK	1	Unmodified	1393.6838	0.68375782	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2	0		3								1	1		1	26.149	25.08	3	0.00089231	21037	160511_QHF_FH_JSI12i_2	55.314	47.589			1.1653	1.2845	15.688	3	0	Plateau	1.2565	1.0771	NaN	1	0	Median	1.1884	1.4728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1653	1.2845	NaN	1	0	Median	148370000	64928000	83443000	41292000	18732000	22559000	47995000	20735000	27261000	0	0	0	59084000	25461000	33623000	26159	4679	24774	163419;163420;163421	221259;221260	221260			2	
ISNDPSPGYNIEQMAK	1	Unmodified	1762.8196	0.81959938	4899	Q9NPF4	OSGEP	Probable tRNA N6-adenosine threonylcarbamoyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	54.094	53.388	2	1.0141E-07	47404	160511_QHF_FH_JSI9i_1	138.02	95.303			0.65219	0.65851	35.624	6	6	Median	1.1447	0.93055	50.1	2	2	Median	0.65219	0.77171	21.236	2	2	Median	0.54486	0.53276	NaN	1	1	Median	0.49924	0.51944	NaN	1	1	Median	322380000	182140000	140240000	124260000	58247000	66013000	95945000	60384000	35562000	55959000	33282000	22677000	46216000	30229000	15987000	26160	4899	24775	163422;163423;163424;163425;163426;163427	221261;221262;221263;221264;221265;221266;221267	221265			7	
ISNFLLEK	1	Unmodified	962.54368	0.54368251	2332	Q12965;O00160	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		57.049	56.347	2	0.020403	49889	160511_QHF_FH_JSI10i_2	56.432	27.919			2.621	2.9695	27.393	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9566	2.4466	NaN	1	1	Median	3.5111	3.6041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	805300000	169970000	635330000	0	0	0	294820000	76844000	217970000	510490000	93127000	417360000	0	0	0	26161	2332	24776	163428;163429	221268;221269	221269			2	
ISNGGLEEGKPVDLVLSCVDNFEAR	1	Unmodified	2717.333	0.3330444	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	98.115	98.124	3	2.0882E-05	84952	160511_QHF_FH_JSI12i_3	54.072	41.876			1.5967	1.4939	38.198	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.11	1.9571	NaN	1	0	Median	1.2083	1.1403	NaN	1	1	Median	44559000	17169000	27390000	0	0	0	0	0	0	13175000	6867100	6307500	31385000	10302000	21082000	26162	4615	24777	163430;163431	221270;221271;221272	221272			3	
ISNIVHISNLVRPFTLGQLK	1	Unmodified	2248.3056	0.3055715	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			83.903	76.801	3;4	9.0533E-19	43214	160513_QHF_FH_JSI10Kac_6	139.02	113.82			0.88492	0.99137	30.712	4	1	Median	1.3059	1.105	51.629	2	1	Median	0.83819	0.99137	6.8003	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1185700000	610380000	575270000	294170000	121590000	172570000	891480000	488790000	402690000	0	0	0	0	0	0	26163	5380	24778	163432;163433;163434;163435	221273;221274;221275;221276;221277;221278	221276			6	
ISNLFNILQHILK	1	Unmodified	1551.9137	0.91369818	3014	Q659A1	ICE2	Little elongation complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.86	88.451	3	3.5081E-17	50039	160513_QHF_FH_JSI9Kac_6	138.42	124.39			0.88633	0.89748	34.343	4	2	Median	1.1181	0.96355	NaN	1	0	Median	0.70261	0.83594	NaN	1	0	Median	1.3285	1.2772	NaN	1	1	Median	0.52911	0.55979	NaN	1	1	Median	684120000	395380000	288740000	108400000	51000000	57399000	328330000	193040000	135290000	117860000	56743000	61113000	129540000	94599000	34938000	26164	3014	24779	163436;163437;163438;163439	221279;221280;221281;221282;221283;221284	221281			6	
ISNLIVLHLR	0	Unmodified	1176.7343	0.73427725	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	4	3	2	71.113	65.196	2;3	8.4774E-07	34575	160513_QHF_FH_JSI9Kac_6	103.22	78.366			0.95537	0.97016	15.553	12	4	Median	1.4517	1.2323	11.433	3	0	Plateau	0.76111	0.82238	6.5904	4	2	Median	1.0825	1.0317	14.252	3	2	Median	0.95537	0.99445	8.2412	2	0	Median	17217000000	9639800000	7577400000	808760000	267240000	541520000	15029000000	8627900000	6401000000	848580000	426320000	422260000	530900000	318330000	212580000	26165	2545	24780	163440;163441;163442;163443;163444;163445;163446;163447;163448;163449;163450;163451	221285;221286;221287;221288;221289;221290;221291;221292;221293;221294;221295;221296;221297;221298;221299;221300;221301;221302;221303;221304	221294			20	
ISNLIVLHLRK	1	Unmodified	1304.8292	0.82924027	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1		By MS/MS			16	0									3		3			62.027	53.662	3;4	0.0023515	29503	160513_QHF_FH_JSI10Kac_6	59.57	42.938			1.0203	1.2036	1.0578	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0203	1.2036	1.0578	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78268000	35314000	42953000	0	0	0	78268000	35314000	42953000	0	0	0	0	0	0	26166	2545	24781	163452;163453;163454	221305;221306;221307	221307			3	
ISNLLSDYGYHLR	0	Unmodified	1549.7889	0.7888916	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	65.857	65.349	3	0.00012793	58101	160511_QHF_FH_JSI10i_2	74.678	62.533			1.0391	1.1484	57.14	4	4	Median	0.45193	0.40854	NaN	1	1	Median	0.83088	1.0313	NaN	1	1	Median	1.5409	1.4397	NaN	1	1	Median	1.2994	1.279	NaN	1	1	Median	406030000	188110000	217920000	47540000	30720000	16820000	60992000	39436000	21557000	79188000	28118000	51070000	218310000	89833000	128470000	26167	1366	24782	163455;163456;163457;163458	221308;221309;221310;221311	221310			4	
ISNPTEFQNHEK	1	Unmodified	1442.679	0.6790068	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	22.097	21.691	3	0.00014204	17732	160511_QHF_FH_JSI12i_3	69.229	64.075			1.2827	1.1136	12.851	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4133	1.3123	NaN	1	0	Median	1.1788	1.2351	17.487	2	1	Median	162770000	78283000	84482000	0	0	0	0	0	0	41197000	17278000	23919000	121570000	61004000	60563000	26168	4525	24783	163459;163460;163461	221312;221313;221314;221315	221314			3	
ISNPWQSPSGTLPALR	0	Unmodified	1722.9053	0.90531834	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.87	75.732	2	2.1312E-05	65799	160511_QHF_FH_JSI12i_3	113.77	79.389			0.95544	0.92803	5.9469	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0356	0.96788	NaN	1	0	Median	0.88151	0.88981	NaN	1	0	Median	101270000	48831000	52434000	0	0	0	0	0	0	49765000	25117000	24649000	51500000	23714000	27786000	26169	2429	24784	163462;163463	221316;221317;221318;221319	221319			4	
ISNQFDWALMR	0	Unmodified	1379.6656	0.66560534	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	78.308	77.519	2	2.8238E-06	68410	160511_QHF_FH_JSI9i_2	112.13	79.289			1.207	1.1315	15.988	8	3	Median	1.333	1.1315	4.9926	2	0	Median	0.93277	1.089	22.655	2	1	Median	1.1395	1.1296	22.478	2	1	Median	1.1237	1.184	25.987	2	1	Median	1756300000	901150000	855160000	299270000	126210000	173060000	385630000	209900000	175730000	640650000	327010000	313640000	430770000	238030000	192740000	26170	1544	24785	163464;163465;163466;163467;163468;163469;163470;163471	221320;221321;221322;221323;221324;221325	221322			6	
ISNQVDLSNVCAQYR	0	Unmodified	1765.8417	0.8417318	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.054	53.39	2	2.398E-06	48078	160511_QHF_FH_JSI10i_1	127.37	109.94			0.88764	0.89923	23.626	4	0	Median	0.88519	0.71388	NaN	1	0	Median	0.89011	1.0674	NaN	1	0	Median	0.77685	0.75758	NaN	1	0	Median	1.0887	1.1379	NaN	1	0	Median	279410000	140210000	139200000	41859000	20803000	21056000	78218000	36452000	41766000	82902000	42841000	40060000	76434000	40114000	36320000	26171	558	24786	163472;163473;163474;163475	221326;221327;221328;221329;221330;221331;221332;221333	221330			8	
ISNTAISISDHTALAQFCK	1	Unmodified	2076.031	0.030989138	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	67.994	67.363	2;3	1.2296E-24	58180	160511_QHF_FH_JSI12i_3	200.55	171.75			0.92616	1.0801	34.225	9	1	Median	1.2361	1.0889	NaN	1	0	Median	0.80867	0.96893	15.355	2	0	Median	0.91616	0.8515	33.605	3	1	Plateau	1.2053	1.3214	4.4214	3	0	Plateau	2560800000	1240000000	1320800000	102780000	48985000	53793000	270740000	162720000	108020000	872300000	486380000	385930000	1315000000	541880000	773100000	26172	1205	24787	163476;163477;163478;163479;163480;163481;163482;163483;163484;163485	221334;221335;221336;221337;221338;221339;221340;221341;221342;221343;221344;221345;221346;221347;221348;221349;221350;221351	221350			18	
ISNYGWDQSDK	1	Unmodified	1311.5731	0.57314474	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	2	2	2	35.347	33.298	2	3.0522E-07	29882	160511_QHF_FH_JSI11i_1	120.06	107.84			0.93607	0.91945	8.0905	7	0	Median	1.0645	0.88436	5.5027	2	0	Median	0.85832	1.0166	7.0248	2	0	Median	0.93607	0.90394	NaN	1	0	Median	0.89256	0.96371	9.5446	2	0	Median	4012500000	1883600000	2128900000	845700000	360510000	485180000	1157700000	542810000	614870000	1162400000	479150000	683240000	846780000	501150000	345640000	26173	4837	24788	163486;163487;163488;163489;163490;163491;163492;163493	221352;221353;221354;221355;221356;221357;221358;221359;221360;221361;221362;221363;221364;221365;221366;221367;221368;221369;221370	221354			19	
ISPAALKK	2	Unmodified	826.52764	0.52763852	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	17.562	17.087	2;3	0.0018465	13720	160511_QHF_FH_JSI9i_3	52.716	37.277			1.2544	1.0585	14.721	7	0	Median	1.3134	1.0656	0.9472	2	0	Median	0.7548	0.86032	NaN	1	0	Median	1.3369	1.2509	12.061	2	0	Median	0.93993	0.96577	0.011279	2	0	Median	1135100000	533910000	601200000	239300000	100460000	138840000	172180000	80277000	91901000	273570000	113070000	160490000	450070000	240100000	209960000	26174	4000	24789	163494;163495;163496;163497;163498;163499;163500	221371;221372;221373;221374;221375;221376;221377;221378;221379	221375			9	
ISPANYEPVHWFLDK	1	Unmodified	1814.8992	0.89917033	2982	Q5VST9	OBSCN	Obscurin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.048	87.937	3	0.0030303	76305	160511_QHF_FH_JSI12i_3	53.828	42.215			0.69111	0.72696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69111	0.72696	NaN	1	1	Median	13651000	9076100	4575200	0	0	0	0	0	0	0	0	0	13651000	9076100	4575200	26175	2982	24790	163501	221380	221380			1	
ISPDGEEGYPGELK	1	Unmodified	1489.6937	0.69365381	3999	Q96C23	GALM	Aldose 1-epimerase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.359	43.715	2	0.00036432	39747	160511_QHF_FH_JSI12i_1	77.64	53.297			0.86589	0.91665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86589	0.91665	NaN	1	0	Median	21976000	11258000	10717000	0	0	0	0	0	0	0	0	0	21976000	11258000	10717000	26176	3999	24791	163502	221381	221381			1	
ISPEQGLQFSR	0	Unmodified	1260.6463	0.64625011	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		32.04	32.04	3	0.025543	27831	160511_QHF_FH_JSI11i_3	18.106	8.6738			1.4514	1.3758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4514	1.3758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23992000	9230800	14761000	0	0	0	0	0	0	23992000	9230800	14761000	0	0	0	26177	1807	24792	163503	221382	221382			1	
ISPEQHWDFTAEDLK	1	Unmodified	1814.8475	0.84752869	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			65.893	65.058	3	0.02221	57602	160511_QHF_FH_JSI10i_2	36.029	13.226			1.5034	1.8233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5034	1.8233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50895000	22242000	28653000	0	0	0	50895000	22242000	28653000	0	0	0	0	0	0	26178	1575	24793	163504	221383	221383			1	
ISPFEHQTYCQR	0	Unmodified	1564.7093	0.70926107	1309;1289	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	3	2	31.903	31.259	2;3	3.3551E-06	26955	160511_QHF_FH_JSI11i_3	99.539	94.908			1.0587	1.088	39.892	8	1	Median	2.0908	1.8077	NaN	1	0	Median	0.99304	1.1916	15.789	2	0	Median	0.80594	0.77056	34.681	3	1	Median	1.3139	1.3735	37.059	2	0	Median	645420000	324200000	321220000	30134000	10558000	19576000	151240000	69024000	82219000	272620000	147480000	125140000	191420000	97144000	94280000	26179	1289;1309	24794	163505;163506;163507;163508;163509;163510;163511;163512	221384;221385;221386;221387;221388;221389;221390;221391;221392	221385			9	
ISPGGISQILDLVK	1	Unmodified	1438.8395	0.83953018	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.64	101.56	2	0.00011372	84134	160511_QHF_FH_JSI10i_3	135.1	92.76			0.99453	0.96076	8.5328	4	0	Median	1.2359	1.0105	NaN	1	0	Median	0.75053	0.86155	NaN	1	0	Median	1.0906	1.0326	NaN	1	0	Median	0.90694	0.91342	NaN	1	0	Median	2016400000	1043000000	973340000	346750000	173660000	173090000	928380000	529120000	399260000	410610000	194310000	216300000	330640000	145950000	184690000	26180	1670	24795	163513;163514;163515;163516	221393;221394;221395;221396;221397	221394			5	
ISPIILNTVLTIMAALSPK	1	Unmodified	1994.185	0.18497058	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	105.57	97.031	2;3	1.2548E-84	54973	160513_QHF_FH_JSI11Kac_6	264	233.67			0.61361	0.69141	111.65	8	3	Median	5.5982	4.885	104.6	2	2	Median	0.57998	0.69141	4.1405	2	0	Median	0.78735	0.76871	30.524	2	1	Median	0.3391	0.35914	0.10159	2	0	Median	3042400000	1399000000	1643400000	729300000	65385000	663910000	2088100000	1182100000	906030000	77086000	39110000	37976000	147900000	112410000	35484000	26181	3196	24796	163517;163518;163519;163520;163521;163522;163523;163524;163525	221398;221399;221400;221401;221402;221403;221404;221405;221406;221407;221408;221409;221410	221400			13	
ISPLCHNLFALYDENTK	1	Unmodified	2033.9881	0.98806169	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	80.326	80.084	3	0.0018734	69423	160511_QHF_FH_JSI12i_3	43.208	37.78			2.0481	2.0382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0481	2.0382	NaN	1	0	Median	60536000	22034000	38502000	0	0	0	0	0	0	0	0	0	60536000	22034000	38502000	26182	1230	24797	163526	221411	221411			1	
ISPLQFR	0	Unmodified	859.49159	0.49158736	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			51.531	49.95	2	0.010327	41686	160511_QHF_FH_JSI10i_3	75.311	32.244			0.87429	0.83945	6.8616	2	0	Median	1.0915	0.88119	NaN	1	0	Median	0.70028	0.79969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1475800000	751380000	724470000	848030000	386710000	461320000	627820000	364660000	263150000	0	0	0	0	0	0	26183	1805	24798	163527;163528	221412;221413	221412			2	
ISPMLSPFISSVVR	0	Unmodified	1531.8432	0.84323535	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.17	100.08	2	0.00043099	88927	160511_QHF_FH_JSI11i_3	73.499	37.166			1.0436	0.99442	4.5263	4	0	Median	1.2862	1.0455	NaN	1	0	Median	0.81431	0.9469	NaN	1	0	Median	1.134	1.0195	NaN	1	0	Median	0.96032	0.96998	NaN	1	0	Median	151220000	73027000	78189000	43261000	18928000	24333000	38130000	20616000	17514000	34387000	16393000	17993000	35438000	17090000	18348000	26184	5110	24799	163529;163530;163531;163532	221414;221415;221416;221417;221418;221419	221415			6	
ISPQLLLAMHR	0	Unmodified	1277.7278	0.72781167	4786	Q9H8M5	CNNM2	Metal transporter CNNM2	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			72.478	64.453	3	0.012269	35444	160513_QHF_FH_JSI10Kac_6	56.225	56.225			0.99098	0.97256	20.812	2	0	Median	0.99742	0.83947	NaN	1	0	Median	0.98459	1.1268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19559000	7023200	12536000	7113300	3764400	3348900	12446000	3258800	9187100	0	0	0	0	0	0	26185	4786	24800	163533;163534	221420	221420			0	
ISPTFADAYSNMGNTLK	1	Unmodified	1828.8665	0.86654957	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	74.536	73.675	2;3	3.2799E-09	64926	160511_QHF_FH_JSI9i_2	134.21	115.46			0.93719	0.92478	19.658	8	2	Median	0.98035	0.86037	7.1617	2	1	Median	0.68484	0.81646	20.666	2	1	Median	1.0698	1.083	30.46	2	0	Median	0.96715	1.0729	1.9795	2	0	Median	260570000	125790000	134780000	72934000	39532000	33402000	42875000	24948000	17928000	83644000	31993000	51651000	61112000	29312000	31800000	26186	274	24801	163535;163536;163537;163538;163539;163540;163541;163542;163543	221421;221422;221423;221424;221425;221426;221427;221428;221429;221430;221431;221432;221433;221434	221426			14	
ISPYVLQLLLATLQAALPLAGLAGR	0	Unmodified	2561.5309	0.53087999	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	2.17				2					6	1	5	1	1	106.03	98.096	2;3;4	1.2805E-77	59427	160513_QHF_FH_JSI10Kac_6	265.27	239.82			1.266	1.3755	37.187	7	2	Median	1.6374	1.3755	NaN	1	0	Median	1.2063	1.4338	45.337	5	2	Median	1.266	1.2166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3647300000	1538700000	2108600000	1002200000	380400000	621780000	2524200000	1105800000	1418300000	116060000	47609000	68447000	4893900	4893900	0	26187	4880	24802	163544;163545;163546;163547;163548;163549;163550;163551	221435;221436;221437;221438;221439;221440;221441;221442;221443;221444	221444			10	
ISQAEEEDQQLLGHLLLVAK	1	Unmodified	2233.1954	0.19541193	4510	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	99.108	98.936	3	1.2701E-06	85081	160511_QHF_FH_JSI12i_2	96.55	80.607			0.7749	0.90194	20.994	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64573	0.77752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92992	1.0463	NaN	1	1	Median	159740000	92363000	67372000	0	0	0	73930000	45836000	28094000	0	0	0	85805000	46527000	39278000	26188	4510	24803	163552;163553;163554	221445;221446;221447	221445			3	
ISQEIGNLMK	1	Unmodified	1131.5958	0.59579444	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	50.055	48.829	2	0.010134	42772	160511_QHF_FH_JSI9i_2	57.859	35.622			0.85184	0.83207	23.865	2	2	Median	0.82973	0.70286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87454	0.98502	NaN	1	1	Median	209890000	112690000	97208000	116760000	62998000	53760000	0	0	0	0	0	0	93136000	49688000	43448000	26189	2806	24804	163555;163556	221448;221449	221449			2	
ISQETEQR	0	Unmodified	989.47779	0.47778779	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	5.7103	5.4806	2	0.0226	3457	160511_QHF_FH_JSI10i_1	43.808	10.967			0.68218	0.72873	7.5542	3	0	Median	NaN	NaN	NaN	0	0	Median	0.55981	0.64963	NaN	1	0	Median	0.78063	0.74906	NaN	1	0	Median	0.68218	0.72873	NaN	1	0	Median	406590000	260550000	146040000	0	0	0	208200000	157820000	50381000	105650000	54723000	50924000	92742000	48005000	44736000	26190	1779	24805	163557;163558;163559	221450	221450			1	
ISQGNISK	1	Unmodified	845.46068	0.46068117	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	10.704	10.323	2	0.0074934	8176	160511_QHF_FH_JSI12i_1	59.35	21.704			1.0058	1.0602	5.3852	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93061	1.1055	6.8072	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0115	1.0602	NaN	1	0	Median	676610000	311310000	365300000	0	0	0	361790000	160430000	201350000	0	0	0	314820000	150870000	163950000	26191	602	24806	163560;163561;163562	221451;221452;221453	221451			3	
ISQKHINSIK	2	Acetyl (K)	1208.6877	0.68772099	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.991	20.792	3	0.034061	12016	160513_QHF_FH_JSI11Kac_6	37.426	21.288			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2936100	2936100	0	0	0	0	0	0	0	2936100	2936100	0	0	0	0	26192	720	24807	163563	221454	221454			1	
ISQLEMAR	0	Unmodified	946.4906	0.49060109	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		28.402	27.829	2	0.019783	24147	160511_QHF_FH_JSI9i_2	46.426	26.949			0.67992	0.82807	41.969	5	0	Median	0.63946	0.53928	NaN	1	0	Median	0.67627	0.81474	2.2961	2	0	Median	1.4179	1.4146	14.305	2	0	Median	NaN	NaN	NaN	0	0	Median	1784300000	819930000	964390000	541830000	212700000	329130000	743860000	389030000	354820000	498640000	218200000	280450000	0	0	0	26193	1270	24808	163564;163565;163566;163567;163568	221455;221456	221455			2	
ISQLEQDLASMR	0	Unmodified	1389.6922	0.69221402	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.387	62.536	2	0.038556	55411	160511_QHF_FH_JSI10i_2	38.478	27.954			0.91874	1.1647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91874	1.1647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41045000	23679000	17367000	0	0	0	41045000	23679000	17367000	0	0	0	0	0	0	26194	4215	24809	163569	221457	221457			1	
ISQLGYSCFYIHAK	1	Unmodified	1685.8236	0.82356254	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.45			7						9	3	3	4	6	65.761	60.758	2;3	1.06E-24	33225	160513_QHF_FH_JSI10Kac_6	160.15	129.6			1.0858	1.0309	30.009	15	4	Median	1.1001	0.92321	21.042	3	1	Plateau	0.87312	1.0459	12.172	3	0	Median	0.91219	0.86739	13.693	4	0	Median	1.2631	1.3056	39.618	5	3	Median	2346700000	1172400000	1174300000	214060000	97412000	116650000	650660000	359940000	290720000	758810000	387700000	371110000	723190000	327350000	395840000	26195	1271	24810	163570;163571;163572;163573;163574;163575;163576;163577;163578;163579;163580;163581;163582;163583;163584;163585	221458;221459;221460;221461;221462;221463;221464;221465;221466;221467;221468;221469;221470;221471;221472;221473;221474;221475;221476;221477;221478;221479;221480;221481;221482;221483;221484	221483			26	
ISQMPVILTPLHFDRDPLQK	1	Unmodified	2347.2722	0.27222246	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		4	14							7	6	4	1	93.686	93.001	3;4	9.2244E-26	81443	160511_QHF_FH_JSI11i_3	179.95	159.13			0.93658	0.89734	44.335	18	10	Median	1.1073	0.90247	53.072	7	5	Median	0.78792	0.90512	53.539	6	2	Median	0.98037	0.94466	18.47	4	3	Median	0.84537	0.87763	NaN	1	0	Median	1501500000	722540000	778990000	337930000	128150000	209780000	523280000	282410000	240870000	524160000	257800000	266360000	116160000	54173000	61986000	26196	1693	24811	163586;163587;163588;163589;163590;163591;163592;163593;163594;163595;163596;163597;163598;163599;163600;163601;163602;163603	221485;221486;221487;221488;221489;221490;221491;221492;221493;221494;221495;221496;221497;221498;221499;221500;221501;221502;221503;221504;221505;221506;221507;221508;221509;221510;221511;221512;221513;221514;221515;221516;221517;221518	221486			33	
ISQMPVILTPLHFDRDPLQK	1	Oxidation (M)	2363.2671	0.26713708	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		81.164	80.17	4	2.1689E-05	66047	160511_QHF_FH_JSI9i_3	66.325	61.458			0.90134	0.93018	12.813	4	1	Median	1.2335	1.0159	NaN	1	0	Median	0.79102	0.92262	18.337	2	1	Median	0.90266	0.85166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205990000	106610000	99372000	40469000	18501000	21968000	80733000	50492000	30241000	84784000	37621000	47162000	0	0	0	26197	1693	24811	163604;163605;163606;163607	221519;221520;221521	221521		1370	3	
ISQPSDINTFSLVEQLPGK	1	Unmodified	2072.079	0.078985188	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	90.163	89.624	3	5.8207E-05	81722	160511_QHF_FH_JSI12i_1	61.757	45.451			1.4162	1.2866	4.2017	3	1	Median	1.5771	1.2866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4162	1.3824	NaN	1	0	Median	1.2867	1.2841	NaN	1	0	Median	72105000	25322000	46783000	14716000	4083200	10633000	0	0	0	40888000	14414000	26475000	16500000	6825300	9675200	26198	162	24812	163608;163609;163610	221522;221523;221524;221525	221523			4	
ISQRDENGELR	0	Unmodified	1315.648	0.64804102	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							1	2	2	1	10.598	10.294	3	0.0021963	8133	160511_QHF_FH_JSI10i_2	45.915	24.543			1.1596	1.1366	21.725	6	1	Median	1.4449	1.2371	NaN	1	0	Median	0.99148	1.1819	24.046	2	0	Median	0.94153	0.90858	19.672	2	1	Median	1.3078	1.3552	NaN	1	0	Median	430510000	213020000	217500000	87024000	41357000	45667000	146430000	73552000	72882000	157920000	79982000	77935000	39140000	18125000	21015000	26199	279	24813	163611;163612;163613;163614;163615;163616	221526;221527;221528;221529;221530;221531	221530			6	
ISQSAPVK	1	Unmodified	828.47052	0.47051757	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	18.541	17.968	2	0.0028104	15090	160511_QHF_FH_JSI9i_1	77.282	9.3017			1.2372	1.2137	12.092	3	0	Plateau	1.8544	1.5305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2372	1.2137	NaN	1	0	Median	1.2122	1.2845	NaN	1	0	Median	614520000	232440000	382080000	155380000	50618000	104760000	0	0	0	250510000	106060000	144440000	208640000	75760000	132880000	26200	1598	24814	163617;163618;163619	221532;221533;221534;221535	221535			4	
ISQSNYIPTQQDVLR	0	Unmodified	1760.9057	0.90571227	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	2	3	2	57.982	57.192	2;3	4.8971E-52	51566	160511_QHF_FH_JSI10i_1	220.66	196.27			1.0351	0.97616	13.985	10	1	Median	1.0841	0.88078	13.843	3	0	Median	0.78227	0.93559	3.0231	2	0	Median	1.04	0.99695	17.541	3	1	Median	1.0432	1.1205	15.313	2	0	Median	1664700000	809440000	855220000	503630000	221120000	282500000	340570000	187300000	153260000	453830000	213530000	240300000	366640000	187490000	179150000	26201	915	24815	163620;163621;163622;163623;163624;163625;163626;163627;163628;163629	221536;221537;221538;221539;221540;221541;221542;221543;221544;221545;221546;221547;221548;221549;221550;221551;221552;221553	221544			16	
ISQTAPEWTAQAMEAQMAQ	0	Unmodified	2090.9401	0.94012522	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									2		2	2	81.043	80.469	2;3	8.1945E-06	73256	160511_QHF_FH_JSI11i_1	98.902	91.531			1.0786	1.0899	17.425	6	3	Median	1.5281	1.237	0.29354	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98065	0.95859	16.643	2	1	Median	0.92761	0.9599	19.471	2	1	Median	297340000	135340000	162000000	111400000	48443000	62961000	0	0	0	100400000	44495000	55903000	85539000	42400000	43138000	26202	4411	24816	163630;163631;163632;163633;163634;163635	221554;221555;221556;221557;221558;221559;221560	221555			7	
ISQTYQQQYGR	0	Unmodified	1370.6579	0.65787742	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	19.628	19.063	2	5.8375E-18	16425	160511_QHF_FH_JSI10i_1	158.76	115.67			1.0516	1.0374	14.3	9	1	Median	1.3051	1.0881	16.983	2	1	Median	0.81777	0.99974	0.018013	2	0	Median	1.2311	1.2377	19.753	2	0	Median	1.0013	1.0374	15.432	3	0	Median	1406500000	682460000	724000000	338600000	151580000	187020000	293560000	180820000	112740000	425060000	163880000	261180000	349230000	186180000	163050000	26203	932	24817	163636;163637;163638;163639;163640;163641;163642;163643;163644	221561;221562;221563;221564;221565;221566;221567;221568;221569;221570;221571;221572	221565			12	
ISREECDK	1	Unmodified	1035.4655	0.46550855	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	4.8564	4.9027	3	0.013939	2537	160511_QHF_FH_JSI11i_3	37.191	15.728			1.7025	1.6608	65.34	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0964	1.0463	NaN	1	0	Median	2.6438	2.6362	NaN	1	0	Median	263710000	120740000	142970000	0	0	0	0	0	0	187590000	100630000	86961000	76128000	20118000	56010000	26204	1545	24818	163645;163646	221573;221574	221574			2	
ISREECDKYALQSQQR	1	Acetyl (K)	2051.9695	0.96945151	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	39.204	29.363	3	0.0014667	16922	160513_QHF_FH_JSI11Kac_5	93.754	83.833			1.2468	1.4157	1.6594	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1587	1.3992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3417	1.4324	NaN	1	0	Median	10320000	7669900	2650200	0	0	0	2398200	1077400	1320900	5570900	5570900	0	2351000	1021700	1329400	26205	1545	24819	163647;163648;163649	221575;221576	221575	1562		2	
ISRLDAELVK	1	Unmodified	1142.6659	0.66592292	5169	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By matching	3	0			5							1	2	1	1	39.614	38.673	2;3	0.0017717	32439	160511_QHF_FH_JSI10i_3	47.559	20.886			0.92144	1.063	16.1	5	0	Median	1.5631	1.2817	NaN	1	0	Median	0.92123	1.0567	0.84102	2	0	Median	1.2816	1.2027	NaN	1	0	Median	0.84357	0.84228	NaN	1	0	Median	405720000	174800000	230920000	66903000	30709000	36193000	188680000	75376000	113310000	45596000	20594000	25002000	104540000	48121000	56417000	26206	5169	24820	163650;163651;163652;163653;163654	221577;221578;221579;221580	221579			4	
ISRPGDSDDSR	0	Unmodified	1203.548	0.54799262	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	5.82	1	4	7					4	1	4	6	5	2	7.761	4.9741	2;3	2.3773E-12	4879	160511_QHF_FH_JSI10i_3	163.38	116.3			0.96149	1.0023	8.215	15	0	Median	1.297	1.0757	7.2797	4	0	Median	0.84256	1.0023	6.5474	5	0	Median	0.97135	0.94991	10.518	5	0	Median	0.89411	0.9909	NaN	1	0	Median	2678100000	1339800000	1338300000	1244500000	555590000	688920000	1125300000	623360000	501900000	299920000	156170000	143750000	8402000	4699000	3703100	26207	1063	24821	163655;163656;163657;163658;163659;163660;163661;163662;163663;163664;163665;163666;163667;163668;163669;163670;163671	221581;221582;221583;221584;221585;221586;221587;221588;221589;221590;221591;221592;221593;221594;221595;221596;221597;221598;221599;221600;221601;221602	221584			22	
ISSALHFCR	0	Unmodified	1089.5389	0.53894826	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		40.182	30.638	3	0.031886	16912	160513_QHF_FH_JSI11Kac_6	27.329	21.296			0.77253	0.76713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77253	0.76713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3478600	1959200	1519400	0	0	0	0	0	0	3478600	1959200	1519400	0	0	0	26208	4065	24822	163672	221603	221603			1	
ISSDLDGHPVPK	1	Unmodified	1263.6459	0.64591575	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.69	7	8	7				3	4	1	8	7	8	7	29.918	26.87	2;3	8.2252E-09	16159	160513_QHF_FH_JSI12Kac_4	104.24	95.355			0.95723	0.99495	13.242	30	1	Median	1.0903	0.91049	15.899	8	0	Median	0.94708	1.125	6.5271	7	0	Median	0.96684	0.95401	8.9169	8	1	Median	0.9162	0.97496	11.219	7	0	Median	26488000000	12903000000	13585000000	5546000000	2420500000	3125500000	7844400000	3760900000	4083500000	8318400000	4348400000	3970000000	4779500000	2373500000	2406000000	26209	1322	24823	163673;163674;163675;163676;163677;163678;163679;163680;163681;163682;163683;163684;163685;163686;163687;163688;163689;163690;163691;163692;163693;163694;163695;163696;163697;163698;163699;163700;163701;163702	221604;221605;221606;221607;221608;221609;221610;221611;221612;221613;221614;221615;221616;221617;221618;221619;221620;221621;221622;221623;221624;221625;221626;221627;221628;221629;221630;221631;221632;221633;221634;221635;221636;221637;221638;221639;221640;221641;221642;221643;221644;221645;221646;221647;221648;221649;221650;221651;221652;221653;221654;221655;221656;221657;221658;221659;221660;221661;221662;221663;221664;221665;221666	221654			63	
ISSDQLSSEHLSSAVEQK	1	Unmodified	1943.9436	0.94361392	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	45.077	43.857	3	0.0066414	38328	160511_QHF_FH_JSI9i_2	39.237	28.122			1.0881	1.0486	6.7813	2	0	Median	1.1423	0.99948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0366	1.1001	NaN	1	0	Median	50682000	26248000	24435000	27356000	15371000	11986000	0	0	0	0	0	0	23326000	10877000	12449000	26210	15	24824	163703;163704	221667;221668;221669	221669			3	
ISSILSSLTSVMK	1	Unmodified	1364.7585	0.75850267	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	99.412	99.286	2	4.6863E-06	88145	160511_QHF_FH_JSI11i_3	126.19	74.748			1.0547	0.85691	25.686	5	2	Median	1.0547	0.85691	NaN	1	0	Median	0.85224	0.97764	48.86	2	2	Median	1.0602	0.98802	NaN	1	0	Median	0.84073	0.84189	NaN	1	0	Median	402590000	181470000	221110000	77727000	41614000	36113000	99531000	52183000	47348000	100910000	34971000	65935000	124420000	52704000	71718000	26211	2984	24825	163705;163706;163707;163708;163709	221670;221671;221672;221673;221674;221675;221676;221677;221678	221671			9	
ISSILSSLTSVMK	1	Oxidation (M)	1380.7534	0.75341729	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			78.737	77.342	2	0.0041772	64930	160511_QHF_FH_JSI10i_3	59.542	40.762			1.631	1.3593	NaN	1	1	Median	1.631	1.3593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13463000	5316900	8145900	13463000	5316900	8145900	0	0	0	0	0	0	0	0	0	26212	2984	24825	163710;163711	221679;221680	221679		2177	2	
ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR	0	Unmodified	3609.6837	0.6836633	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14.3	2.36				1					2			2	1	95.299	86.025	3;4	1.1765E-132	46436	160513_QHF_FH_JSI12Kac_6	242.03	225.75			1.1944	1.1896	7.7766	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1483	1.104	2.5894	2	0	Median	1.1944	1.2584	NaN	1	0	Median	370030000	176570000	193450000	0	0	0	0	0	0	183120000	89390000	93727000	186910000	87183000	99728000	26213	1322	24826	163712;163713;163714	221681;221682;221683	221683			3	
ISSIQSIVPALEIANAHR	0	Unmodified	1918.0636	0.063609895	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.39	2	7	8						4	4	6	6	5	86.286	84.215	2;3	5.129E-66	77065	160511_QHF_FH_JSI11i_3	279.77	257.9			0.91567	0.92187	13.546	20	6	Median	1.222	1.0382	9.563	4	1	Median	0.73869	0.86644	6.2386	6	2	Median	0.97637	0.96945	18.187	6	2	Median	0.88471	0.79218	12.398	4	1	Linear	15506000000	8649200000	6856400000	2178900000	1043700000	1135200000	6028400000	3634400000	2394000000	4414200000	2225500000	2188700000	2884100000	1745600000	1138500000	26214	980	24827	163715;163716;163717;163718;163719;163720;163721;163722;163723;163724;163725;163726;163727;163728;163729;163730;163731;163732;163733;163734;163735	221684;221685;221686;221687;221688;221689;221690;221691;221692;221693;221694;221695;221696;221697;221698;221699;221700;221701;221702;221703;221704;221705;221706;221707;221708;221709;221710;221711;221712;221713;221714;221715;221716;221717;221718;221719;221720;221721;221722;221723;221724;221725;221726;221727	221685			44	
ISSIQSIVPALEIANAHRK	1	Unmodified	2046.1586	0.15857291	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.22	6.21		1	5						3	3	3	2	1	77.438	74.188	4	3.6333E-08	64152	160511_QHF_FH_JSI10i_3	101.92	92.827			0.96624	1.0545	21.537	9	1	Median	0.95343	0.79725	21.597	3	1	Plateau	0.97294	1.1425	1.6869	3	0	Plateau	1.0407	0.97242	11.464	2	0	Median	0.62609	0.62888	NaN	1	0	Median	833960000	416430000	417530000	311210000	143760000	167450000	330140000	174900000	155250000	166190000	85872000	80315000	26419000	11901000	14518000	26215	980	24828	163736;163737;163738;163739;163740;163741;163742;163743;163744	221728;221729;221730;221731;221732;221733;221734;221735;221736;221737;221738;221739;221740;221741	221731			12	
ISSLLAELEAIQR	0	Unmodified	1441.814	0.81404372	5452	Q9UNY4	TTF2	Transcription termination factor 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	97.718	97.738	3	0.053595	84694	160511_QHF_FH_JSI12i_3	18.829	12.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2349000	0	2349000	0	0	0	0	0	0	0	0	0	2349000	0	2349000	26216	5452	24829	163745	221742	221742			1	
ISSLLEEQFQQGK	1	Unmodified	1505.7726	0.77257283	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.61	10	8	4				6	9	4	9	11	8	13	63.982	58.848	2;3	1.9125E-116	51825	160511_QHF_FH_JSI9i_2	270.72	223.52			0.9265	0.97707	49.372	39	14	Median	0.96697	0.82265	31.503	9	2	Median	0.84442	1.0136	41.103	11	6	Median	0.92072	0.93103	28.645	7	1	Median	0.93671	1.0005	73.688	12	5	Median	19498000000	9051000000	10447000000	3060300000	1348400000	1711900000	4701300000	2177700000	2523600000	6434000000	3141100000	3292900000	5302800000	2383800000	2919000000	26217	1985	24830	163746;163747;163748;163749;163750;163751;163752;163753;163754;163755;163756;163757;163758;163759;163760;163761;163762;163763;163764;163765;163766;163767;163768;163769;163770;163771;163772;163773;163774;163775;163776;163777;163778;163779;163780;163781;163782;163783;163784;163785;163786	221743;221744;221745;221746;221747;221748;221749;221750;221751;221752;221753;221754;221755;221756;221757;221758;221759;221760;221761;221762;221763;221764;221765;221766;221767;221768;221769;221770;221771;221772;221773;221774;221775;221776;221777;221778;221779;221780;221781;221782;221783;221784;221785;221786;221787;221788;221789;221790;221791;221792;221793;221794;221795;221796;221797;221798;221799;221800;221801;221802;221803;221804;221805;221806;221807;221808;221809;221810;221811;221812	221781			69	
ISSLMHVPPSLFTEPNEISQYLPIK	1	Unmodified	2839.483	0.4830031	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	0		By matching		By MS/MS	2.5	0.5		1	1								1		1	101.55	101.53	3	1.6175E-42	88253	160511_QHF_FH_JSI12i_3	187.76	170.6			0.81816	0.90626	8.6454	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71026	0.85252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94246	0.96339	NaN	1	0	Median	385790000	187120000	198670000	0	0	0	91828000	53785000	38043000	0	0	0	293960000	133330000	160620000	26218	554	24831	163787;163788	221813;221814	221814			2	
ISSMVVMENVGQQK	1	Unmodified	1548.764	0.76399875	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.55	4	6	4					3	1	5	5	4	4	56.698	53.912	2;3	1.2157E-29	46311	160511_QHF_FH_JSI12i_3	220.94	204.27			0.9192	0.97029	40.186	15	4	Median	1.1454	0.97516	50.977	4	1	Median	0.81619	0.9914	19.325	3	1	Median	0.89972	0.88805	29.199	4	1	Median	0.80678	0.90474	59.275	4	1	Median	2020800000	1280900000	739890000	602900000	453520000	149380000	346240000	224890000	121340000	528530000	295140000	233390000	543150000	307370000	235770000	26219	1579	24832	163789;163790;163791;163792;163793;163794;163795;163796;163797;163798;163799;163800;163801;163802;163803;163804;163805;163806	221815;221816;221817;221818;221819;221820;221821;221822;221823;221824;221825;221826;221827;221828;221829;221830;221831;221832;221833;221834;221835;221836;221837;221838;221839;221840;221841	221840			27	
ISSNPNPVVQMSVGHK	1	Unmodified	1692.8617	0.86173896	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	2	3	4	3	44.211	42.062	2;3	1.2955E-06	35767	160511_QHF_FH_JSI12i_3	124.2	116.22			0.81847	0.83494	16.924	12	3	Median	1.0049	0.8503	21.515	2	1	Median	0.71708	0.85058	25.74	3	1	Plateau	0.92571	0.87842	11.006	4	0	Median	0.90247	0.94551	13.997	3	1	Plateau	1491800000	779170000	712650000	166600000	84087000	82509000	172700000	84359000	88340000	540760000	279350000	261410000	611760000	331370000	280390000	26220	6	24833	163807;163808;163809;163810;163811;163812;163813;163814;163815;163816;163817;163818	221842;221843;221844;221845;221846;221847;221848;221849;221850;221851;221852;221853;221854;221855;221856	221854			14	
ISSPTETER	0	Unmodified	1018.4931	0.49310351	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	5.82	4	5	2		1	3	3	1		3	6	5	5	14.849	11.186	2	3.5787E-05	9568	160511_QHF_FH_JSI11i_2	99.802	81.071			0.99927	1.0172	9.3849	19	3	Median	1.1637	1.0172	9.8893	3	0	Median	0.82178	1.0008	4.7181	6	1	Median	1.0009	1.0197	11.534	5	0	Median	1.0267	1.1347	8.1004	5	2	Median	24849000000	12768000000	12081000000	5553400000	2685400000	2868000000	6686000000	3807300000	2878700000	7122000000	3509700000	3612300000	5487900000	2765600000	2722300000	26221	1387	24834	163819;163820;163821;163822;163823;163824;163825;163826;163827;163828;163829;163830;163831;163832;163833;163834;163835;163836;163837	221857;221858;221859;221860;221861;221862;221863;221864;221865;221866;221867;221868;221869;221870;221871;221872;221873;221874;221875;221876;221877;221878;221879;221880;221881;221882;221883;221884;221885;221886	221879			30	
ISSPTGSK	1	Unmodified	775.40758	0.40758296	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	9.3338	5.9999	2	0.017233	6016	160511_QHF_FH_JSI12i_1	48.794	18.609			0.96327	1.0493	7.2176	7	0	Median	1.3398	1.1143	NaN	1	0	Median	0.93533	1.118	NaN	1	0	Median	0.99545	0.98052	4.0339	2	0	Median	0.95749	1.0493	7.286	3	0	Median	7215900000	3605100000	3610800000	1646900000	691600000	955320000	1953900000	1138900000	814980000	1815000000	902060000	912970000	1800100000	872510000	927560000	26222	4296	24835	163838;163839;163840;163841;163842;163843;163844	221887;221888;221889;221890;221891;221892	221888			6	
ISSSSFIEPIFPTSK	1	Unmodified	1638.8505	0.8504888	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	84.895	84.209	2	5.5767E-07	74118	160511_QHF_FH_JSI11i_2	138.75	120.7			0.98861	1.001	24.236	5	4	Median	1.0456	0.88529	NaN	1	1	Median	0.63765	0.75263	NaN	1	1	Median	1.1815	1.2052	26.261	2	2	Median	0.94092	1.027	NaN	1	0	Median	85460000	41727000	43733000	10245000	4234700	6009900	16018000	10485000	5533500	41159000	17224000	23935000	18039000	9784200	8254800	26223	3195	24836	163845;163846;163847;163848;163849;163850	221893;221894;221895;221896;221897;221898	221895			6	
ISSSSFSR	0	Unmodified	869.4243	0.42429566	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3		1	1	1	1	18.889	9.3227	2	0.011946	9916	160513_QHF_FH_JSI11Kac_5	63.565	18.484		+	1.0215	1.066	9.4071	4	0	Median	1.325	1.1383	NaN	1	0	Median	0.78368	0.92215	NaN	1	0	Median	1.0431	1.0268	NaN	1	0	Median	1.0003	1.1067	NaN	1	0	Median	534600000	242200000	292400000	154570000	66349000	88216000	104780000	57887000	46898000	203860000	78483000	125380000	71385000	39483000	31902000	26224	51	24837	163851;163852;163853;163854	221899;221900	221900			2	
ISSTLYQAAAPVLTPAK	1	Unmodified	1729.9614	0.96143623	3556	Q8N6L1	KRTCAP2	Keratinocyte-associated protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		72.391	71.772	2	0.00011739	62910	160511_QHF_FH_JSI11i_2	73.927	56.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26225	3556	24838	163855	221901	221901			1	
ISSTSHTQDVVYLQQQLQAYAMER	0	Unmodified	2795.3548	0.35484247	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	84.766	84.594	3	1.7978E-06	73351	160511_QHF_FH_JSI12i_3	65.425	58.702			0.66611	0.67336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66611	0.67336	NaN	1	0	Median	26230000	14650000	11580000	0	0	0	0	0	0	0	0	0	26230000	14650000	11580000	26226	2691	24839	163856;163857;163858	221902;221903;221904;221905	221903			4	
ISSVSEVMK	1	Unmodified	978.50558	0.50558245	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	34.596	33.826	2	0.0098729	30584	160511_QHF_FH_JSI12i_1	50.607	33.221			0.95523	1.1262	38.239	8	0	Median	0.83285	0.69461	73.968	2	0	Median	0.95523	1.1478	8.3107	2	0	Median	1.1162	1.1105	30.895	2	0	Median	0.94614	1.0307	22.561	2	0	Median	2136300000	1060100000	1076200000	350490000	157280000	193210000	675420000	376160000	299260000	642190000	269430000	372760000	468240000	257280000	210960000	26227	2780	24840	163859;163860;163861;163862;163863;163864;163865;163866	221906;221907;221908;221909;221910;221911;221912;221913;221914;221915;221916;221917	221909			12	
ISSWLSTFFGRPCHLIK	1	Unmodified	2048.0666	0.066586783	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.667	78.041	4	7.3842E-12	43479	160513_QHF_FH_JSI10Kac_6	130.27	114.42			1.0471	1.2074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0471	1.2074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180250000	92206000	88046000	0	0	0	180250000	92206000	88046000	0	0	0	0	0	0	26228	4052	24841	163867	221918	221918			1	
ISSYVNWIK	1	Unmodified	1108.5917	0.59169534	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	62.459	61.862	2	0.00081194	53260	160511_QHF_FH_JSI12i_3	73.665	45.446			1.2446	1.3224	11.576	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1518	1.3224	NaN	1	0	Median	1.6725	1.5602	NaN	1	0	Median	1.2446	1.2483	NaN	1	0	Median	234650000	105860000	128780000	0	0	0	46348000	26038000	20309000	85550000	34421000	51129000	102750000	45406000	57347000	26229	2947	24842	163868;163869;163870	221919	221919			1	
ISTASGDGR	0	Unmodified	862.41446	0.41445926	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	5.8836	5.5387	2	0.036438	3534	160511_QHF_FH_JSI10i_1	38.776	26.345			0.75116	0.84304	9.1116	5	0	Linear	0.93786	0.76949	NaN	1	0	Median	0.66183	0.8087	17.664	2	0	Median	0.78597	0.77832	NaN	1	0	Median	0.74148	0.79344	NaN	1	0	Median	976060000	500010000	476050000	186420000	78110000	108310000	315940000	176060000	139880000	199460000	111640000	87819000	274250000	134210000	140040000	26230	2048	24843	163871;163872;163873;163874;163875	221920	221920			1	
ISTEEAIRK	1	Unmodified	1045.5768	0.57677356	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.36		1	2					1		1	1	1	1	17.877	15.35	3	8.6437E-05	12831	160511_QHF_FH_JSI11i_3	68.846	39.676			0.79261	0.69683	21.231	4	1	Median	0.84138	0.70845	NaN	1	0	Median	0.46606	0.57057	NaN	1	1	Median	0.74666	0.6854	NaN	1	0	Median	0.92434	0.95284	NaN	1	0	Median	1144400000	536420000	607980000	10669000	5005200	5664000	190950000	113930000	77019000	352670000	146690000	205980000	590110000	270790000	319320000	26231	1085	24844	163876;163877;163878;163879	221921;221922;221923;221924;221925;221926	221921			6	
ISTEVGITNVDLSTVDK	1	Unmodified	1789.9309	0.93092397	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	72.161	71.822	2;3	4.883E-52	65314	160511_QHF_FH_JSI11i_1	216.34	175.06			0.77394	0.82007	17.631	5	1	Median	NaN	NaN	NaN	0	0	Median	0.68566	0.80612	12.216	2	0	Median	0.94956	0.91784	30.125	2	1	Median	0.7978	0.82007	NaN	1	0	Median	493870000	262760000	231120000	0	0	0	242810000	144880000	97932000	123390000	59311000	64081000	127670000	58563000	69104000	26232	817	24845	163880;163881;163882;163883;163884	221927;221928;221929;221930;221931;221932;221933	221927			7	
ISTINILLSTLK	1	Unmodified	1314.8123	0.8122528	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.05	86.33	2	0.0012618	49329	160513_QHF_FH_JSI10Kac_6	80.245	58.781			1.3229	1.557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3229	1.557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88466000	35969000	52497000	0	0	0	88466000	35969000	52497000	0	0	0	0	0	0	26233	405	24846	163885	221934	221934			1	
ISTITPQIQAFNLQK	1	Unmodified	1700.9461	0.94612052	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	79.136	78.455	2;3	1.4245E-09	69010	160511_QHF_FH_JSI11i_2	141.95	129.38			0.9532	0.92555	15.301	7	0	Median	1.0796	0.9217	0.58828	2	0	Median	0.62867	0.76622	17.983	2	0	Median	0.97989	1.0067	7.9288	2	0	Median	0.9532	1.0558	NaN	1	0	Median	133970000	70317000	63658000	33634000	17904000	15730000	28634000	18743000	9890800	55959000	25049000	30911000	15747000	8621000	7126300	26234	1347	24847	163886;163887;163888;163889;163890;163891;163892	221935;221936;221937;221938;221939;221940;221941;221942;221943;221944	221941			10	
ISTLPQLNSALVQDLAK	1	Unmodified	1810.02	0.020013746	1058	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	97.97	97.78	2;3	2.87E-05	85702	160511_QHF_FH_JSI9i_2	88.427	77.483			0.88437	0.90569	27.683	8	5	Median	0.88031	0.75564	46.425	2	2	Median	0.87098	1.049	35.053	2	1	Median	0.84154	0.81884	1.1614	2	2	Median	0.96761	1.0731	10.893	2	0	Median	92692000	48731000	43961000	22354000	11410000	10943000	25150000	12789000	12361000	18873000	11418000	7455100	26315000	13114000	13201000	26235	1058	24848	163893;163894;163895;163896;163897;163898;163899;163900;163901	221945;221946;221947;221948;221949;221950;221951;221952;221953;221954;221955;221956	221949			12	
ISTLSCENK	1	Unmodified	1050.5016	0.5015597	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.537	15.079	2	0.010883	12883	160511_QHF_FH_JSI12i_1	49.444	18.14			1.2527	1.3727	10.407	4	1	Linear	1.4259	1.1725	NaN	1	0	Median	1.0098	1.1839	NaN	1	0	Median	1.162	1.1404	NaN	1	1	Median	1.3503	1.4317	NaN	1	0	Median	375980000	167290000	208690000	67442000	16015000	51427000	92984000	51261000	41723000	110380000	52822000	57555000	105180000	47192000	57987000	26236	2490	24849	163902;163903;163904;163905	221957;221958;221959;221960	221959			4	
ISTLYYQLGDHELSLSEVR	0	Unmodified	2222.1219	0.12191263	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	82.109	80.985	3	1.307E-06	70022	160511_QHF_FH_JSI12i_2	95.205	86.109			0.92038	1.0449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92038	1.0449	NaN	1	0	Median	51660000	31970000	19690000	0	0	0	0	0	0	0	0	0	51660000	31970000	19690000	26237	2373	24850	163906	221961	221961			1	
ISTPSFSSYYK	1	Unmodified	1278.6132	0.61321864	5679	Q9Y5T4	DNAJC15	DnaJ homolog subfamily C member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	57.438	56.774	2	5.9997E-06	50301	160511_QHF_FH_JSI11i_3	114.5	90.275			0.59084	0.61533	41.164	6	1	Median	0.57555	0.48708	NaN	1	0	Median	0.60653	0.7347	NaN	1	0	Median	0.75042	0.74133	51.421	2	1	Median	0.71143	0.76501	65.322	2	0	Median	420890000	242030000	178860000	54360000	27071000	27289000	62796000	36293000	26503000	134470000	84221000	50252000	169260000	94441000	74818000	26238	5679	24851	163907;163908;163909;163910;163911;163912	221962;221963;221964;221965;221966;221967	221962			6	
ISTQLDFASK	1	Unmodified	1108.5764	0.57643921	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.288	48.071	2	0.024901	42811	160511_QHF_FH_JSI9i_1	40.883	24.918			1.2956	1.0669	NaN	1	0	Median	1.2956	1.0669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71380000	33951000	37429000	71380000	33951000	37429000	0	0	0	0	0	0	0	0	0	26239	1016	24852	163913	221968	221968			1	
ISTSLNPGNPVNNQIFLQEYVANLLK	1	Unmodified	2885.5287	0.52870774	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.29	102.3	3	1.3205E-58	91401	160511_QHF_FH_JSI11i_3	204.53	199.62			1.2368	1.227	2.9455	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2727	1.2017	NaN	1	0	Median	1.2018	1.2528	NaN	1	0	Median	796190000	356640000	439550000	0	0	0	0	0	0	272220000	121800000	150420000	523960000	234840000	289130000	26240	231	24853	163914;163915	221969;221970	221969			2	
ISTVVSSK	1	Unmodified	819.47018	0.47018322	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.71	4	3				3	1			2	3	4	2	18.385	15.362	2	0.013012	12652	160511_QHF_FH_JSI9i_1	52.716	22.531			0.89399	0.95559	10.773	11	0	Median	1.1446	0.95857	3.7813	2	0	Median	0.80452	0.95587	3.4296	3	0	Median	1.0096	0.98584	12.737	4	0	Median	0.79069	0.84781	16.924	2	0	Median	6378600000	3423500000	2955100000	1318400000	636490000	681870000	1634100000	979030000	655080000	1961800000	931650000	1030100000	1464400000	876330000	588060000	26241	1466	24854	163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926	221971;221972;221973;221974;221975;221976;221977;221978;221979;221980;221981;221982	221977			12	
ISTYGLPAGGIQPHPQTK	1	Unmodified	1863.9843	0.98429694	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.579	50.462	3	1.4081E-05	44599	160511_QHF_FH_JSI11i_3	81.51	71.043			1.1906	1.1347	10.197	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.141	1.0558	NaN	1	0	Median	1.2423	1.2196	NaN	1	1	Median	241530000	127830000	113700000	0	0	0	0	0	0	112560000	56682000	55883000	128960000	71145000	57817000	26242	5664	24855	163927;163928	221983;221984	221983			2	
ISVAAASK	1	Unmodified	745.4334	0.43340378	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	3	1	3	15.951	15.358	2	0.020102	12405	160511_QHF_FH_JSI12i_2	46.129	14.839			0.90609	0.96431	22.512	9	1	Median	1.0776	0.90969	8.2462	2	0	Median	0.83314	0.9947	4.7667	3	0	Plateau	0.53454	0.55147	NaN	1	1	Median	0.73366	0.82033	20.03	3	0	Plateau	2304300000	1190900000	1113300000	398490000	166270000	232220000	680690000	339690000	341000000	396760000	245220000	151530000	828330000	439740000	388580000	26243	1303	24856	163929;163930;163931;163932;163933;163934;163935;163936;163937	221985;221986;221987;221988;221989;221990;221991;221992	221985			8	
ISVAGVTSSNVGYLAHAIHQVTK	1	Unmodified	2351.2597	0.25974352	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	2	5	3	1	84.521	82.104	3;4	2.6742E-24	75253	160511_QHF_FH_JSI11i_3	161.66	153.86			0.83088	0.88428	11.321	10	1	Median	0.98877	0.80191	19.832	2	0	Median	0.80377	0.90113	8.814	5	0	Median	0.9918	0.93505	10.565	2	0	Median	0.75522	0.81135	NaN	1	1	Median	2259900000	1308500000	951330000	106370000	48097000	58269000	1637900000	908830000	729030000	495770000	340070000	155710000	19882000	11550000	8332100	26244	773	24857	163938;163939;163940;163941;163942;163943;163944;163945;163946;163947;163948	221993;221994;221995;221996;221997;221998;221999;222000;222001;222002;222003;222004;222005;222006;222007	221994			15	
ISVATGALEAAQGSK	1	Unmodified	1401.7464	0.74635808	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							1	2	5	3	50.372	49.765	2	1.4623E-06	43709	160511_QHF_FH_JSI10i_2	160.38	141.28			0.88452	0.96754	39.484	10	3	Median	1.2722	1.15	NaN	1	0	Median	0.61921	0.73431	62.976	2	1	Median	0.76148	0.74425	47.995	4	2	Median	0.83371	0.86756	15.727	3	0	Median	357310000	186180000	171130000	47541000	17739000	29802000	68549000	39321000	29227000	125510000	69691000	55817000	115710000	59430000	56280000	26245	1743	24858	163949;163950;163951;163952;163953;163954;163955;163956;163957;163958;163959	222008;222009;222010;222011;222012;222013;222014;222015;222016;222017;222018;222019;222020;222021	222018			14	
ISVFSSYWSYRPF	0	Unmodified	1637.7878	0.78782897	4596	Q9GZN7	ROGDI	Protein rogdi homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.992	82.682	2	3.517E-30	48059	160513_QHF_FH_JSI10Kac_6	210.87	186.08			0.99931	1.0527	4.8839	4	0	Median	1.2952	1.1097	NaN	1	0	Median	0.92986	1.0712	NaN	1	0	Median	1.0369	0.98981	NaN	1	0	Median	0.96309	1.0346	NaN	1	0	Median	457230000	217950000	239280000	119310000	55284000	64030000	181670000	90011000	91656000	65512000	30166000	35346000	90737000	42490000	48247000	26246	4596	24859	163960;163961;163962;163963	222022;222023;222024;222025;222026	222026			5	
ISVIVETVYTHVLHPYPTQITQSEK	1	Unmodified	2881.5226	0.52255973	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.43		2	16						12	10	9	4	7	90.753	87.194	3;4	1.0896E-106	43701	160513_QHF_FH_JSI10Kac_6	276.75	251.08			0.86347	0.73751	115.94	27	25	Median	0.91917	0.73751	94.782	9	8	Median	0.37742	0.4514	107.49	9	9	Median	0.77534	0.73702	169.78	4	3	Median	0.86347	0.89909	154.85	5	5	Median	10209000000	6147800000	4060800000	2459800000	1091100000	1368700000	5304600000	3582600000	1722000000	1257000000	585440000	671540000	1187200000	888640000	298560000	26247	816	24860	163964;163965;163966;163967;163968;163969;163970;163971;163972;163973;163974;163975;163976;163977;163978;163979;163980;163981;163982;163983;163984;163985;163986;163987;163988;163989;163990;163991;163992;163993	222027;222028;222029;222030;222031;222032;222033;222034;222035;222036;222037;222038;222039;222040;222041;222042;222043;222044;222045;222046;222047;222048;222049;222050;222051;222052;222053;222054;222055;222056;222057;222058;222059;222060;222061;222062;222063;222064;222065;222066;222067;222068;222069;222070;222071;222072;222073;222074;222075;222076	222075			50	
ISVLQNNYEK	1	Unmodified	1206.6245	0.62445203	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.744	39.285	2	0.054016	33634	160511_QHF_FH_JSI11i_2	42.338	27.669			1.1809	1.1716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1809	1.1716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32792000	16183000	16609000	0	0	0	0	0	0	32792000	16183000	16609000	0	0	0	26248	2627	24861	163994	222077	222077			1	
ISVLYSFLR	0	Unmodified	1096.6281	0.62808085	2371	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	84.906	76.656	2	5.4108E-05	41818	160513_QHF_FH_JSI9Kac_6	104.06	79.134			1.1532	1.1405	31.34	4	1	Median	1.2217	1.0465	NaN	1	1	Median	1.0885	1.2429	NaN	1	0	Median	1.6366	1.5015	NaN	1	0	Median	0.69041	0.71895	NaN	1	0	Median	262360000	135610000	126750000	55025000	27806000	27219000	113540000	59045000	54498000	57869000	25756000	32113000	35918000	22998000	12920000	26249	2371	24862	163995;163996;163997;163998;163999	222078;222079;222080;222081;222082	222079			5	
ISVMGGEQAANVLATITK	1	Unmodified	1801.9608	0.96078431	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	2	4	5	95.344	95.122	2;3	5.1454E-07	83506	160511_QHF_FH_JSI9i_2	116.96	100.71			0.81787	0.86757	81.383	13	10	Median	0.69223	0.58416	70.34	2	2	Median	0.53439	0.65524	39.697	2	1	Median	0.96728	0.93914	112.82	4	3	Median	0.89719	0.91151	92.883	5	4	Median	650540000	432280000	218260000	101080000	68623000	32460000	82621000	57201000	25420000	136300000	104470000	31833000	330530000	201990000	128540000	26250	4852	24863	164000;164001;164002;164003;164004;164005;164006;164007;164008;164009;164010;164011;164012	222083;222084;222085;222086;222087;222088;222089;222090;222091;222092;222093;222094;222095;222096;222097	222088			15	
ISVNDFIIK	1	Unmodified	1047.5964	0.59644637	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	78.287	77.575	2	0.0029208	68100	160511_QHF_FH_JSI11i_2	62.582	38.427			0.96294	0.98283	6.0841	8	0	Median	1.1086	0.92097	6.9231	2	0	Median	0.88097	1.0487	3.305	2	0	Median	0.96294	0.95639	0.90119	2	0	Median	0.94439	1.009	1.4427	2	0	Median	1055000000	542570000	512430000	163540000	70028000	93515000	272430000	149240000	123190000	376260000	210220000	166040000	242760000	113080000	129680000	26251	970	24864	164013;164014;164015;164016;164017;164018;164019;164020	222098;222099;222100;222101;222102;222103;222104;222105;222106	222105			9	
ISVNNVLPVFDNLMQQK	1	Unmodified	1958.0295	0.029532575	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	101.69	101.7	2;3	3.7563E-137	88387	160511_QHF_FH_JSI12i_3	288.52	241.22			1.4129	1.3008	8.8778	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4129	1.3008	NaN	1	1	Median	1.3304	1.3307	12.417	2	1	Median	846510000	359000000	487500000	0	0	0	0	0	0	154540000	65015000	89521000	691970000	293990000	397980000	26252	869	24865	164021;164022;164023	222107;222108;222109;222110	222109			4	
ISVREPMQTGIK	1	Unmodified	1357.7388	0.73877028	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	38.678	37.803	2;3	0.0001315	33080	160511_QHF_FH_JSI11i_3	69.03	48.603			1.0151	0.9615	8.8453	7	0	Median	1.2024	0.96899	1.2604	2	0	Median	0.81697	0.93511	3.9353	2	0	Median	1.0917	1.0246	8.6704	2	0	Median	0.80383	0.81107	NaN	1	0	Median	5914900000	2822200000	3092700000	2584000000	1031300000	1552700000	1794000000	1018100000	775940000	1361200000	676350000	684820000	175720000	96511000	79206000	26253	1263	24866	164024;164025;164026;164027;164028;164029;164030	222111;222112;222113;222114;222115;222116;222117;222118;222119;222120;222121;222122;222123	222112			13	
ISVREPMQTGIK	1	Oxidation (M)	1373.7337	0.7336849	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	1	By MS/MS		By MS/MS		3	0			2							1		1		38.526	37.78	3	0.0274	30768	160511_QHF_FH_JSI9i_3	40.475	23.108			0.65455	0.56724	21.985	2	0	Median	0.60606	0.48557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70692	0.66265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	273130000	107700000	165430000	153640000	38565000	115080000	0	0	0	119480000	69133000	50351000	0	0	0	26254	1263	24866	164031;164032	222124	222124			1	
ISVSFYHVK	1	Unmodified	1078.5811	0.58113065	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.23	6.52		3	8					3	8	6	6	5	5	52.82	47.549	2;3	1.878E-05	41487	160511_QHF_FH_JSI11i_3	83.948	73.19			1.01	1.0047	11.154	22	1	Median	1.2051	0.98006	11.034	6	0	Median	0.83406	0.97036	8.722	6	0	Median	1.1264	1.0685	7.9274	5	0	Median	0.95822	1.0162	15.706	5	1	Median	19605000000	9118600000	10486000000	4229600000	1849800000	2379800000	4770900000	2316300000	2454600000	5327400000	2340000000	2987400000	5277200000	2612600000	2664600000	26255	1867	24867	164033;164034;164035;164036;164037;164038;164039;164040;164041;164042;164043;164044;164045;164046;164047;164048;164049;164050;164051;164052;164053;164054	222125;222126;222127;222128;222129;222130;222131;222132;222133;222134;222135;222136;222137;222138;222139;222140;222141;222142;222143;222144;222145;222146;222147;222148;222149;222150;222151;222152;222153;222154;222155;222156;222157;222158;222159;222160;222161;222162;222163;222164;222165;222166;222167;222168;222169;222170;222171	222125			47	
ISVSFYHVKNNGK	2	Acetyl (K)	1533.794	0.79397698	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		58.992	49.891	3	0.0029284	27111	160513_QHF_FH_JSI11Kac_6	49.929	35.053			0.38064	0.35205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38064	0.35205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65950000	43067000	22883000	0	0	0	11283000	0	11283000	54667000	43067000	11600000	0	0	0	26256	1867	24868	164055;164056;164057	222172;222173;222174	222172	1884		3	
ISVTQPDSIVGIVAVDK	1	Unmodified	1739.9669	0.96691554	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								3	3	4	3	87.739	87.216	2;3	1.6333E-10	79532	160511_QHF_FH_JSI11i_1	138.01	111.31			1.0968	1.0657	31.307	13	11	Median	1.0968	0.8877	10.617	3	3	Median	1.1022	1.2823	2.8602	3	2	Median	0.93443	0.90562	27.213	4	4	Median	1.2073	1.2835	61.888	3	2	Median	481850000	224630000	257220000	81532000	38075000	43457000	123370000	57899000	65467000	162160000	73906000	88254000	114790000	54749000	60046000	26257	3173	24869	164058;164059;164060;164061;164062;164063;164064;164065;164066;164067;164068;164069;164070	222175;222176;222177;222178;222179;222180;222181;222182;222183;222184;222185;222186;222187;222188	222176			14	
ISVVPTQPGLLLSSSGDGTLR	0	Unmodified	2096.1477	0.14773345	1889	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							1	3	3	2	90.292	89.901	2	6.0938E-09	79152	160511_QHF_FH_JSI9i_2	101.3	83.168			1.006	1.0415	20.862	7	2	Median	1.3173	1.1646	NaN	1	0	Median	0.91859	1.1059	8.4748	2	0	Median	1.0664	1.0557	2.4666	2	1	Median	0.75096	0.78671	29.824	2	1	Median	137160000	70913000	66251000	30839000	14272000	16568000	38707000	19600000	19107000	30247000	15216000	15032000	37370000	21825000	15545000	26258	1889	24870	164071;164072;164073;164074;164075;164076;164077;164078;164079	222189;222190;222191;222192;222193;222194;222195;222196;222197;222198;222199;222200;222201;222202;222203	222197			15	
ISVYSIMGGSTDGLR	0	Unmodified	1554.7712	0.77119262	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	2	3	1	2	80.941	80.112	2;3	1.9759E-06	69668	160511_QHF_FH_JSI12i_3	129.84	90.533			1.0134	1.0211	10.412	7	0	Median	1.3472	1.0973	13.954	2	0	Median	1.0043	1.1423	1.3043	2	0	Median	0.97245	0.90473	NaN	1	0	Median	0.97457	1.0016	2.724	2	0	Median	1119200000	518360000	600820000	176380000	63965000	112420000	231950000	109210000	122740000	102220000	54874000	47348000	608630000	290310000	318320000	26259	636	24871	164080;164081;164082;164083;164084;164085;164086;164087	222204;222205;222206;222207;222208;222209;222210;222211	222209			8	
ISVYSIMGGSTDGLR	0	Oxidation (M)	1570.7661	0.76610725	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	12.5	5.5			1					1	2			3	1	66.148	59.259	2	0.00015947	51357	160511_QHF_FH_JSI12i_3	102.4	79.081			0.90214	0.89956	6.4539	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87697	0.87499	3.9159	2	1	Median	0.94977	0.96795	NaN	1	0	Median	57243000	33638000	23604000	0	0	0	0	0	0	10832000	5741300	5090800	46411000	27897000	18514000	26260	636	24871	164088;164089;164090;164091	222212;222213;222214;222215;222216;222217	222217		231	6	
ISVYYNEASSHK	1	Unmodified	1396.6623	0.6622941	2430	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	1	1	3	4	31.214	26.545	2;3	1.2388E-08	14954	160513_QHF_FH_JSI11Kac_6	108.59	101.03			1.1108	1.1631	24.656	8	1	Median	1.0107	0.8813	NaN	1	0	Median	1.0551	1.2463	NaN	1	0	Median	1.235	1.1848	37.259	3	1	Median	1.1367	1.1419	4.8188	3	0	Plateau	375610000	161510000	214090000	12991000	6641200	6349400	11449000	5623300	5825500	177560000	66691000	110870000	173610000	82558000	91050000	26261	2430	24872	164092;164093;164094;164095;164096;164097;164098;164099;164100	222218;222219;222220;222221;222222;222223;222224;222225;222226;222227;222228;222229;222230;222231;222232	222223			14	
ISVYYNEATGGK	1	Unmodified	1300.6299	0.62993134	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.18	6.3	4	4	4			4	3	5	4	6	7	7	8	43.922	38.106	2	2.3058E-12	19398	160513_QHF_FH_JSI10Kac_5	128.17	100.42			0.93721	0.98903	21.435	27	1	Median	1.0566	0.86916	43.141	6	1	Median	0.85939	1.018	9.1187	7	0	Median	0.96304	0.95487	14.467	7	0	Median	0.94584	1.0277	10.738	7	0	Median	42466000000	20885000000	21581000000	8822200000	3846900000	4975300000	11151000000	5876800000	5274700000	12311000000	6013500000	6297800000	10182000000	5148200000	5033300000	26262	872	24873	164101;164102;164103;164104;164105;164106;164107;164108;164109;164110;164111;164112;164113;164114;164115;164116;164117;164118;164119;164120;164121;164122;164123;164124;164125;164126;164127;164128	222233;222234;222235;222236;222237;222238;222239;222240;222241;222242;222243;222244;222245;222246;222247;222248;222249;222250;222251;222252;222253;222254;222255;222256;222257;222258;222259;222260;222261;222262;222263;222264;222265;222266;222267;222268;222269;222270;222271;222272;222273;222274;222275;222276;222277;222278;222279;222280;222281;222282;222283;222284;222285;222286;222287;222288;222289;222290;222291;222292;222293;222294;222295;222296	222291			64	
ISVYYNEATGGKYVPR	1	Acetyl (K)	1857.9261	0.92611336	872	P07437	TUBB	Tubulin beta chain	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.487								5	8	2	4	4	3	71.011	61.446	2;3	3.8103E-120	33914	160513_QHF_FH_JSI10Kac_6	260.19	241.93			0.89194	0.97502	59.445	13	1	Median	1.1989	1.0264	7.2581	2	0	Median	0.82445	0.97972	98.62	4	1	Median	0.70329	0.67752	5.4169	4	0	Median	0.98844	1.0656	10.952	3	0	Median	507730000	257740000	249990000	86086000	45145000	40941000	132370000	65397000	66974000	159990000	92027000	67964000	129280000	55170000	74114000	26263	872	24874	164129;164130;164131;164132;164133;164134;164135;164136;164137;164138;164139;164140;164141	222297;222298;222299;222300;222301;222302;222303;222304;222305;222306;222307;222308;222309;222310;222311;222312;222313;222314	222312	581		18	
ISWEEYK	1	Unmodified	953.44945	0.44944778	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	44.893	44.193	2	0.025501	39699	160511_QHF_FH_JSI10i_1	54.549	34.267			0.86971	0.91736	22.936	8	0	Median	0.99056	0.82219	NaN	1	0	Median	0.73017	0.88134	13.744	2	0	Median	0.99558	0.98257	12.691	2	0	Median	0.85164	0.93688	38.699	3	0	Median	5700900000	2735600000	2965300000	689540000	307000000	382540000	1359100000	750390000	608710000	2230600000	983060000	1247600000	1421700000	695150000	726510000	26264	2652	24875	164142;164143;164144;164145;164146;164147;164148;164149	222315;222316;222317;222318;222319;222320;222321;222322	222319			8	
ISWGQGHFWELWR	0	Unmodified	1700.8212	0.82119478	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			85.283	79.616	2;3	6.0177E-15	44584	160513_QHF_FH_JSI10Kac_6	137.95	111.83			0.94327	1.0917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94327	1.0917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178680000	83349000	95329000	0	0	0	178680000	83349000	95329000	0	0	0	0	0	0	26265	4878	24876	164150;164151;164152	222323;222324;222325;222326	222326			4	
ISWIPFMQEK	1	Unmodified	1277.6478	0.64783001	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	91.464	91.442	2	2.5599E-05	79449	160511_QHF_FH_JSI12i_3	97.565	70.435			1.0207	0.99246	4.0537	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1169	1.0213	NaN	1	0	Median	0.93279	0.96441	NaN	1	0	Median	237800000	124120000	113680000	0	0	0	0	0	0	92736000	44939000	47797000	145060000	79176000	65886000	26266	421	24877	164153;164154	222327;222328;222329;222330	222329			4	
ISWLSSLDWEAK	1	Unmodified	1433.7191	0.7190807	3872	Q92692	PVRL2	Nectin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	95.815	95.822	2	9.0189E-05	83057	160511_QHF_FH_JSI12i_3	108.7	70.611			0.94124	0.94906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94124	0.94906	NaN	1	0	Median	56136000	30106000	26031000	0	0	0	0	0	0	0	0	0	56136000	30106000	26031000	26267	3872	24878	164155	222331;222332	222332			2	
ISWVGEAVK	1	Unmodified	987.53893	0.53893149	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	51.26	50.281	2	0.003304	44288	160511_QHF_FH_JSI10i_2	60.91	60.91			0.9137	0.97425	1.6848	4	0	Median	1.0798	0.95639	NaN	1	0	Median	0.81434	0.97833	NaN	1	0	Median	0.94567	0.97019	NaN	1	0	Median	0.88281	0.99576	NaN	1	0	Median	270320000	139950000	130370000	48437000	24722000	23714000	56433000	32735000	23698000	96835000	50834000	46001000	68612000	31658000	36954000	26268	1273	24879	164156;164157;164158;164159	222333;222334	222334			2	
ISYFTFIGTPVQATNMNDFK	1	Oxidation (M)	2309.1038	0.10381973	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.14	79.858	3	2.1188E-13	42499	160513_QHF_FH_JSI12Kac_6	122.57	108.26			1.0176	1.0289	10.421	4	0	Median	1.2532	1.0698	NaN	1	0	Median	1.0208	1.2157	NaN	1	0	Median	1.0144	0.98947	NaN	1	0	Median	0.90762	0.96377	NaN	1	0	Median	349160000	170130000	179030000	102400000	44907000	57490000	77539000	40269000	37271000	87191000	41898000	45293000	82032000	43058000	38974000	26269	328	24880	164160;164161;164162;164163	222335;222336;222337;222338;222339;222340;222341	222338		127	7	
ISYFTFIGTPVQATNMNDFK	1	Unmodified	2293.1089	0.10890511	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.49		3	1						8	2	3	3	4	94.816	89.237	2;3	0	48503	160513_QHF_FH_JSI10Kac_6	375.06	347.41			0.86413	0.95879	19.956	12	0	Median	1.2869	1.1186	6.4	2	0	Median	0.94424	1.1139	21.107	3	0	Plateau	1.1131	1.0702	15.507	3	0	Plateau	0.79421	0.81816	19.337	4	0	Median	2529900000	1239100000	1290800000	361930000	148420000	213520000	708370000	389890000	318470000	828080000	355790000	472290000	631530000	344960000	286570000	26270	328	24880	164164;164165;164166;164167;164168;164169;164170;164171;164172;164173;164174;164175	222342;222343;222344;222345;222346;222347;222348;222349;222350;222351;222352;222353;222354;222355;222356;222357;222358;222359;222360;222361	222361			20	
ISYGPDWK	1	Unmodified	964.46543	0.46543219	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.817	41.441	2	0.058264	35228	160511_QHF_FH_JSI12i_2	44.377	23.678			0.7056	0.80854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7056	0.80854	NaN	1	1	Median	136090000	96019000	40071000	0	0	0	0	0	0	0	0	0	136090000	96019000	40071000	26271	860	24881	164176	222362	222362			1	
ISYSGQFLVK	1	Unmodified	1140.6179	0.61791009	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	60.583	56.949	2	0.0023079	30846	160513_QHF_FH_JSI11Kac_6	79.986	40.339			1.0646	1.0775	19.884	6	1	Median	0.9755	0.82479	11.646	2	0	Median	0.937	1.0666	NaN	1	0	Median	1.244	1.2143	15.48	2	1	Median	1.0946	1.113	NaN	1	0	Median	530160000	236400000	293760000	59524000	28183000	31341000	34590000	15403000	19188000	199650000	90915000	108740000	236390000	101900000	134490000	26272	5153	24882	164177;164178;164179;164180;164181;164182	222363;222364;222365;222366;222367;222368	222365			6	
ISYTQFPNSFYEPHQDFTSPDIFKK	2	Unmodified	3035.4341	0.43413865	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	88.472	88.417	4	1.6362E-05	76636	160511_QHF_FH_JSI12i_3	50.539	45.485			1.3141	1.3187	49.348	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0267	0.93023	NaN	1	1	Median	1.682	1.8693	NaN	1	1	Median	104540000	55149000	49391000	0	0	0	0	0	0	33276000	22319000	10958000	71264000	32830000	38434000	26273	3379	24883	164183;164184	222369;222370;222371	222371			3	
ITAAQHSVTGSAVSK	1	Unmodified	1455.7682	0.76815616	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.46		7	6					4	5	5	7	5	5	19.958	16.134	2;3	1.3429E-05	13039	160511_QHF_FH_JSI12i_3	117.4	104.63			1.2771	1.1948	59.843	20	11	Median	1.2968	1.074	47.601	3	1	Median	0.64506	0.7419	76.634	7	6	Median	1.2999	1.2131	25.457	5	2	Median	1.3277	1.4334	54.316	5	2	Median	1847500000	886290000	961220000	110830000	35144000	75683000	255750000	146330000	109420000	632570000	341610000	290960000	848360000	363210000	485160000	26274	2425	24884	164185;164186;164187;164188;164189;164190;164191;164192;164193;164194;164195;164196;164197;164198;164199;164200;164201;164202;164203;164204;164205;164206	222372;222373;222374;222375;222376;222377;222378;222379;222380;222381;222382;222383;222384;222385;222386;222387;222388;222389;222390;222391;222392;222393;222394;222395;222396;222397;222398	222393			27	
ITAASQEHGLK	1	Unmodified	1153.6091	0.60913632	4542	Q9BYC9	MRPL20	39S ribosomal protein L20, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5	5.51		3	1						1	2	1	1	1	13.535	11.809	3	6.0202E-05	9271	160511_QHF_FH_JSI11i_2	78.548	44.682			0.92401	1.1426	25.729	5	1	Median	1.0775	0.94946	38.74	2	1	Median	0.92401	1.1426	NaN	1	0	Median	0.89439	0.90297	NaN	1	0	Median	1.322	1.3539	NaN	1	0	Median	554180000	226500000	327680000	103840000	45578000	58267000	113380000	52940000	60438000	128510000	59068000	69440000	208450000	68915000	139540000	26275	4542	24885	164207;164208;164209;164210;164211	222399;222400;222401;222402	222400			4	
ITADGAHFELR	0	Unmodified	1228.62	0.62003536	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	42.679	42.136	3	0.00052445	37136	160511_QHF_FH_JSI11i_3	57.802	45.595			1.1941	1.2222	39.596	5	0	Median	0.81873	0.70744	NaN	1	0	Median	0.54609	0.66461	NaN	1	0	Median	1.3301	1.3105	9.8646	2	0	Median	1.5006	1.5548	NaN	1	0	Median	453380000	232270000	221110000	58635000	35103000	23532000	76074000	55908000	20166000	204640000	101290000	103350000	114040000	39975000	74063000	26276	3432	24886	164212;164213;164214;164215;164216	222403;222404;222405;222406;222407	222404			4	
ITADGLQEVFETNVFGHFILIR	0	Unmodified	2518.322	0.32200943	1884	P56937	HSD17B7	3-keto-steroid reductase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.904	88.492	3	0.019764	50600	160513_QHF_FH_JSI11Kac_6	43.38	31.184			1.4967	1.3733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4967	1.3733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57960000	23266000	34694000	0	0	0	0	0	0	57960000	23266000	34694000	0	0	0	26277	1884	24887	164217	222408	222408			1	
ITAEEMYDIFGK	1	Unmodified	1415.6643	0.66426794	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	91.221	90.726	2	0.00012084	79661	160511_QHF_FH_JSI11i_2	86.014	67.703			1.0015	1.0762	18.292	6	1	Median	1.1513	1.0068	NaN	1	0	Median	0.92977	1.1503	NaN	1	0	Median	0.9425	0.9293	1.6998	2	1	Median	1.2189	1.3229	17.954	2	0	Median	796430000	381310000	415120000	133000000	58405000	74591000	180510000	109580000	70928000	281000000	133460000	147540000	201920000	79858000	122060000	26278	5574	24888	164218;164219;164220;164221;164222;164223	222409;222410;222411;222412;222413;222414;222415;222416;222417;222418	222415			9	
ITAEIFSPNDKK	2	Unmodified	1361.7191	0.7190807	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	41.595	41.484	3	0.00043647	36479	160511_QHF_FH_JSI11i_3	59.898	51.593			1.0127	0.99475	15.108	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94192	0.89396	NaN	1	0	Median	1.0889	1.1069	NaN	1	0	Median	184010000	73032000	110980000	0	0	0	0	0	0	65238000	30404000	34834000	118770000	42628000	76143000	26279	4248	24889	164224;164225	222419;222420	222419			2	
ITAFHNAHDLSK	1	Unmodified	1352.6837	0.68369824	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				22.603	21.305	3	0.038665	17116	160511_QHF_FH_JSI9i_3	29.981	24.497			2.5932	2.1229	NaN	1	1	Median	2.5932	2.1229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22307000	7030500	15276000	22307000	7030500	15276000	0	0	0	0	0	0	0	0	0	26280	3521	24890	164226	222421	222421			1	
ITAFIVER	0	Unmodified	947.54402	0.54401687	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	60.611	51.051	2	0.01085	27654	160513_QHF_FH_JSI11Kac_6	65.88	20.919			0.99616	0.91677	13.475	5	0	Median	1.2856	1.0847	13.967	2	0	Median	0.76854	0.89664	NaN	1	0	Median	0.99616	0.91677	NaN	1	0	Median	0.82478	0.84432	NaN	1	0	Median	173590000	92522000	81064000	43894000	19274000	24620000	50147000	27824000	22324000	60191000	34446000	25744000	19353000	10978000	8375600	26281	4777	24891	164227;164228;164229;164230;164231	222422;222423	222422			2	
ITAFVVER	0	Unmodified	933.52837	0.5283668	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.61	1	4	1				1	3	2	2	4	3	3	50.204	44.792	2	0.018555	22841	160513_QHF_FH_JSI10Kac_5	58.119	36.855			1.0043	1.0573	19.171	12	0	Median	1.1469	0.97209	10.5	2	0	Median	0.69731	0.86244	17.807	4	0	Linear	0.7514	0.75678	19.532	3	0	Plateau	1.1611	1.2717	26.884	3	0	Median	1982300000	1090900000	891430000	298330000	161540000	136790000	507540000	304420000	203120000	429340000	235250000	194090000	747100000	389660000	357440000	26282	1675	24892	164232;164233;164234;164235;164236;164237;164238;164239;164240;164241;164242;164243	222424;222425	222425			2	
ITAHLVHELR	0	Unmodified	1187.6775	0.67749065	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.69			11						2	6	4	1	2	31.546	29.26	3;4	6.5854E-05	24178	160511_QHF_FH_JSI9i_3	78.653	68.129			1.1371	1.0581	33.915	12	4	Median	1.3205	1.0514	16.618	5	2	Median	0.94502	1.0712	24.478	4	1	Median	1.0909	1.019	NaN	1	0	Median	1.7107	1.7594	72.682	2	1	Median	445480000	213860000	231620000	222900000	106660000	116240000	99466000	52383000	47084000	50631000	28395000	22235000	72486000	26423000	46063000	26283	1545	24893	164244;164245;164246;164247;164248;164249;164250;164251;164252;164253;164254;164255;164256	222426;222427;222428;222429;222430;222431;222432;222433;222434;222435;222436;222437;222438;222439;222440;222441	222432			15	
ITALDEFATK	1	Unmodified	1107.5812	0.58119023	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	56.756	56.05	2	0.00099054	48177	160511_QHF_FH_JSI12i_2	68.557	20.134			1.2117	1.2594	20.783	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2697	1.4291	NaN	1	0	Median	1.3314	1.3144	NaN	1	0	Median	0.95335	1.0349	21.716	2	0	Median	248790000	108690000	140100000	0	0	0	30362000	15829000	14533000	93561000	34568000	58993000	124870000	58291000	66578000	26284	2470	24894	164257;164258;164259;164260	222442;222443;222444	222443			3	
ITAMDTEDQGVK	1	Unmodified	1306.6075	0.60748134	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.849	27.266	2	4.4765E-05	23708	160511_QHF_FH_JSI9i_1	100.82	78.582			1.0033	0.97575	16.699	4	0	Median	1.2887	1.0471	NaN	1	0	Median	0.77332	0.90924	NaN	1	0	Median	1.2523	1.2321	NaN	1	0	Median	0.80381	0.84353	NaN	1	0	Median	923810000	486420000	437390000	270810000	133440000	137370000	214210000	118630000	95574000	236760000	112500000	124260000	202030000	121850000	80184000	26285	4759	24895	164261;164262;164263;164264	222445;222446	222446			2	
ITAMDTEDQGVK	1	Oxidation (M)	1322.6024	0.60239596	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	2									1			1	27.786	27.23	2	0.00062189	23766	160511_QHF_FH_JSI9i_1	77.379	63.172			1.1643	1.2212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1643	1.2212	NaN	1	1	Median	48733000	22317000	26415000	0	0	0	0	0	0	0	0	0	48733000	22317000	26415000	26286	4759	24895	164265;164266	222447;222448	222448		2526	2	
ITAPTHVPLQYIGPNQPR	0	Unmodified	2001.0796	0.07959431	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			63.704	62.195	3	3.5274E-05	52231	160511_QHF_FH_JSI10i_3	70.783	60.618			1.1746	1.1144	9.2366	2	0	Median	1.4847	1.1896	NaN	1	0	Median	0.92934	1.044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201800000	96291000	105510000	95633000	40352000	55281000	106170000	55940000	50231000	0	0	0	0	0	0	26287	4889	24896	164267;164268	222449	222449			1	
ITAQENDMEVELPAAANSR	0	Unmodified	2057.9688	0.96878281	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.13	59.738	2	8.6854E-09	53973	160511_QHF_FH_JSI10i_1	143.38	120.14			1.5374	1.7134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5374	1.7134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20017000	9951300	10066000	0	0	0	20017000	9951300	10066000	0	0	0	0	0	0	26288	4300	24897	164269	222450	222450			1	
ITAQQITTPGAQQK	1	Unmodified	1483.7995	0.79945628	4163	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.6	35.014	2	0.013219	31700	160511_QHF_FH_JSI12i_1	45.359	29.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26289	4163	24898	164270	222451	222451			1	
ITASYEDRVTFLPTGITFK	1	Unmodified	2158.131	0.13102076	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	89.167	88.387	3	0.0069632	76650	160511_QHF_FH_JSI12i_3	34.274	25.091			0.72779	0.71	25.423	3	0	Plateau	1.423	1.1605	NaN	1	0	Median	0.6967	0.81041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72779	0.71	NaN	1	0	Median	88599000	46557000	42042000	20105000	9208300	10897000	24655000	12800000	11855000	0	0	0	43838000	24549000	19290000	26290	5701	24899	164271;164272;164273	222452;222453	222453			2	
ITCLCQVPQNAANR	0	Unmodified	1643.7872	0.78719381	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	37.766	37.021	2	6.1035E-07	33375	160511_QHF_FH_JSI11i_1	172.27	147.93			1.1844	1.1574	18.912	7	0	Median	1.1844	1.0208	NaN	1	0	Median	0.89855	1.0689	11.259	2	0	Median	1.0571	1.0278	23.242	2	0	Median	1.3515	1.4336	3.1053	2	0	Median	400270000	202460000	197810000	37182000	15142000	22040000	114870000	59924000	54945000	136700000	72233000	64465000	111520000	55164000	56361000	26291	1664	24900	164274;164275;164276;164277;164278;164279;164280	222454;222455;222456;222457;222458;222459;222460;222461	222454			8	
ITDAYLDQYLWYEADK	1	Unmodified	2005.9309	0.93092397	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	94.506	94.192	2	2.5626E-11	81330	160511_QHF_FH_JSI12i_2	109.84	88.287			1.2285	1.441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2285	1.441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6170400	1377000	4793400	0	0	0	6170400	1377000	4793400	0	0	0	0	0	0	26292	3101	24901	164281;164282;164283	222462;222463;222464	222462			3	
ITDEEATK	1	Unmodified	905.43419	0.43419164	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	8.2199	7.6977	2	0.010104	5164	160511_QHF_FH_JSI9i_1	55.37	21.197			0.72556	0.67021	7.4673	2	1	Median	0.77343	0.63574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68065	0.70655	NaN	1	0	Median	977790000	558540000	419250000	461740000	226990000	234750000	0	0	0	0	0	0	516050000	331550000	184500000	26293	897	24902	164284;164285;164286;164287	222465;222466;222467;222468	222468			4	
ITDEEELNDYK	1	Unmodified	1367.6093	0.60925548	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.637	35.334	2	0.0050205	31572	160511_QHF_FH_JSI10i_1	63.694	42.008			0.71723	0.76621	16.374	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57483	0.68244	NaN	1	1	Median	0.89491	0.86027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147660000	93947000	53708000	0	0	0	74447000	46969000	27478000	73208000	46978000	26230000	0	0	0	26294	4566	24903	164288;164289	222469;222470	222470			2	
ITDFENRR	0	Unmodified	1049.5254	0.52540669	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			13.301	12.539	2	0.018857	9941	160511_QHF_FH_JSI10i_3	46.426	23.406			0.83317	0.95275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83317	0.95275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35256000	18083000	17172000	0	0	0	35256000	18083000	17172000	0	0	0	0	0	0	26295	3922	24904	164290	222471	222471			1	
ITDGLHALQEASNK	1	Unmodified	1495.7631	0.76307078	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							1	2	8	3	41.119	40.573	2;3	1.7376E-05	35568	160511_QHF_FH_JSI11i_3	84.169	60.943			0.91338	0.90773	62.207	9	9	Median	NaN	NaN	NaN	0	0	Median	0.71046	0.87548	81.917	2	2	Median	0.91338	0.83455	67.079	5	5	Median	1.3037	1.3712	58.331	2	2	Median	896010000	518270000	377740000	0	0	0	233570000	158420000	75145000	493130000	285110000	208020000	169320000	74737000	94579000	26296	679	24905	164291;164292;164293;164294;164295;164296;164297;164298;164299;164300;164301;164302;164303;164304	222472;222473;222474;222475;222476;222477;222478;222479;222480;222481;222482;222483;222484;222485;222486	222475			15	
ITDGTMLQAIER	0	Unmodified	1346.6864	0.68640036	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	62.35	61.438	2	0.021894	53565	160511_QHF_FH_JSI11i_2	41.704	12.977			0.82886	0.86002	3.7735	4	0	Median	0.92662	0.80547	NaN	1	0	Median	0.70107	0.85337	NaN	1	0	Median	0.84076	0.86672	NaN	1	0	Median	0.81714	0.87705	NaN	1	0	Median	298140000	157980000	140160000	56651000	31496000	25155000	65671000	34673000	30998000	93266000	49764000	43502000	82550000	42044000	40506000	26297	5234	24906	164305;164306;164307;164308	222487	222487			1	
ITDLANLSAANHDAAIFPGGFGAAK	1	Unmodified	2441.2339	0.2339227	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	3	3	3	86.413	85.758	3;4	3.83E-63	74405	160511_QHF_FH_JSI12i_3	213.47	190.59			0.94386	1.0257	14.876	12	0	Median	0.96868	0.83443	13.162	3	0	Plateau	0.71491	0.88538	11.521	3	0	Plateau	1.0842	1.0481	20.357	3	0	Median	0.91967	1.0038	21.11	3	0	Median	2840200000	1416700000	1423500000	392000000	191280000	200720000	484820000	288520000	196300000	1034900000	502500000	532410000	928450000	434410000	494030000	26298	3	24907	164309;164310;164311;164312;164313;164314;164315;164316;164317;164318;164319;164320	222488;222489;222490;222491;222492;222493;222494;222495;222496;222497;222498;222499;222500;222501;222502;222503;222504;222505;222506;222507;222508;222509;222510;222511;222512;222513	222511			26	
ITDPQYFLDTPQQAAAILQK	1	Unmodified	2260.1739	0.17394821	2932	Q5T013	HYI	Putative hydroxypyruvate isomerase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		100.41	100.26	3	3.4542E-05	88585	160511_QHF_FH_JSI9i_1	58.693	53.6			0.89048	0.72516	27.481	3	2	Median	0.89048	0.72516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83927	0.80253	37.973	2	2	Median	NaN	NaN	NaN	0	0	Median	33859000	15851000	18008000	13799000	7701700	6097100	0	0	0	20060000	8149100	11911000	0	0	0	26299	2932	24908	164321;164322;164323	222514;222515;222516	222516			3	
ITDQDGDK	1	Unmodified	890.39814	0.39814049	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	5.09	4.87	2	0.016562	2859	160511_QHF_FH_JSI10i_1	49.418	31.382			1.0523	1.0689	22.639	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.363	NaN	1	0	Median	1.0634	1.0689	15.573	2	0	Median	0.7911	0.81958	NaN	1	0	Median	401720000	205820000	195890000	0	0	0	77067000	41757000	35310000	250190000	122810000	127380000	74463000	41259000	33204000	26300	4675	24909	164324;164325;164326;164327	222517;222518;222519	222519			3	
ITDSAGHILYSK	1	Unmodified	1303.6772	0.67721588	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.12	2	4					3	7	5	3	5	7	6	38.628	31.517	2;3	6.4587E-09	17448	160513_QHF_FH_JSI9Kac_5	98.531	84.085			1.0475	1.0511	19.136	21	0	Median	1.2356	1.066	4.9647	3	0	Median	1.0226	1.201	25.359	5	0	Median	1.1338	1.1148	19.104	7	0	Median	0.90547	1.0018	15.042	6	0	Median	3404300000	1728600000	1675700000	86036000	35467000	50568000	233160000	122920000	110240000	1889800000	933850000	955920000	1195300000	636400000	558950000	26301	1678	24910	164328;164329;164330;164331;164332;164333;164334;164335;164336;164337;164338;164339;164340;164341;164342;164343;164344;164345;164346;164347;164348	222520;222521;222522;222523;222524;222525;222526;222527;222528;222529;222530;222531;222532;222533;222534;222535;222536;222537;222538;222539;222540;222541;222542;222543;222544	222525			24	
ITDSEASKPK	2	Unmodified	1074.5557	0.55570376	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By matching	1.75	0.433	1	3								1		2	1	6.7829	6.4449	3	0.0048701	4311	160511_QHF_FH_JSI9i_2	46.352	16.609			1.3276	1.271	28.191	4	1	Median	1.3653	1.1674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6836	1.6325	39.265	2	1	Median	1.1741	1.3062	NaN	1	0	Median	325900000	144910000	181000000	37781000	16746000	21035000	0	0	0	214630000	88341000	126290000	73494000	39819000	33675000	26302	5066	24911	164349;164350;164351;164352	222545;222546	222545			2	
ITDSEDK	1	Unmodified	806.36578	0.36577773	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	5.26	2				2	3				1	3	2	1	5.4382	0.13607	2	0.02255	1802	160513_QHF_FH_JSI12Kac_3	67.981	23.289			1.1262	1.2044	12.356	7	0	Median	1.2522	1.0495	NaN	1	0	Median	1.1262	1.3356	11.238	3	0	Median	1.2171	1.1799	9.2693	2	0	Median	1.0414	1.1371	NaN	1	0	Median	5224000000	2196600000	3027400000	2057000000	762710000	1294300000	2951000000	1330100000	1620900000	132120000	62305000	69815000	83895000	41482000	42413000	26303	1441	24912	164353;164354;164355;164356;164357;164358;164359	222547;222548;222549;222550;222551	222549			5	
ITDSPEEIVQK	1	Unmodified	1257.6452	0.64524705	5282	Q9UGM6	WARS2	Tryptophan--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.895	39.572	2	0.055793	35530	160511_QHF_FH_JSI11i_1	42.338	30.102			0.46843	0.45457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46843	0.45457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76142000	46715000	29427000	0	0	0	0	0	0	76142000	46715000	29427000	0	0	0	26304	5282	24913	164360	222552	222552			1	
ITDYGGDK	1	Unmodified	867.39741	0.39741221	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	9.9653	9.7164	2	0.029114	7623	160511_QHF_FH_JSI12i_1	41.876	24.934			1.0019	1.0174	8.6899	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0988	1.0818	NaN	1	0	Median	0.91354	0.95672	NaN	1	0	Median	215540000	108030000	107510000	0	0	0	0	0	0	94481000	48657000	45824000	121060000	59372000	61688000	26305	552	24914	164361;164362	222553	222553			1	
ITEAIGIISK	1	Unmodified	1043.6227	0.62266112	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	6		1					1				1	1		57.985	52.371	2	0.047186	45294	160511_QHF_FH_JSI11i_2	43.77	29.613			1.0419	1.1283	102.06	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9927	2.322	NaN	1	1	Median	0.54481	0.54828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90355000	53489000	36866000	0	0	0	10340000	5010200	5329300	80016000	48479000	31537000	0	0	0	26306	2605	24915	164363;164364	222554;222555	222555			2	
ITEAPASEK	1	Unmodified	944.48148	0.48147619	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		10.148	9.7646	2	0.00062933	7494	160511_QHF_FH_JSI10i_1	87.639	60.115			0.286	0.28029	7.8059	3	3	Plateau	0.29393	0.24003	NaN	1	1	Median	0.22423	0.26347	NaN	1	1	Median	0.286	0.28029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4388700000	3700600000	688080000	1424000000	1196000000	227990000	1588900000	1360300000	228550000	1375800000	1144300000	231540000	0	0	0	26307	2116	24916	164365;164366;164367	222556;222557;222558	222557			3	
ITEDHEK	1	Unmodified	870.40831	0.40831125	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				4.5687	4.1749	2	0.021145	2057	160511_QHF_FH_JSI9i_2	51.854	15.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26308	4762	24917	164368	222559	222559			1	
ITEDYYVHLIADNLPVATR	0	Unmodified	2202.1321	0.13208339	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.24	100.07	3	0.00014454	85946	160511_QHF_FH_JSI12i_2	64.2	47.448			0.81818	0.86162	2.0409	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8426	0.84928	NaN	1	1	Median	0.79446	0.87415	NaN	1	1	Median	131690000	73941000	57746000	0	0	0	0	0	0	71669000	39260000	32409000	60017000	34681000	25336000	26309	3841	24918	164369;164370	222560;222561	222560			2	
ITEFCHR	0	Unmodified	961.44399	0.44398525	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	4	3	11.826	11.493	2;3	0.00097274	8649	160511_QHF_FH_JSI12i_3	94.262	80.59			0.94946	0.97203	17.84	12	0	Median	1.2538	1.0772	10.949	2	0	Median	0.8173	1.1225	13.096	3	0	Plateau	1.0604	0.99056	18.865	4	0	Linear	0.92878	0.92966	3.3462	3	0	Median	5642800000	2747000000	2895800000	196200000	72310000	123890000	699930000	360610000	339320000	2474100000	1260500000	1213500000	2272600000	1053500000	1219100000	26310	867	24919	164371;164372;164373;164374;164375;164376;164377;164378;164379;164380;164381;164382	222562;222563;222564;222565;222566;222567;222568;222569;222570;222571	222571			10	
ITEGDVVVGIASSGLHSNGFSLVR	0	Unmodified	2413.2601	0.26013745	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	96.115	95.951	3	3.9747E-29	83200	160511_QHF_FH_JSI12i_3	159.73	145.4			0.94417	0.92328	9.3361	5	2	Median	1.294	1.0978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92954	0.89666	4.1379	2	0	Median	0.93636	0.9606	7.6458	2	2	Median	703730000	379110000	324620000	95243000	46431000	48812000	0	0	0	224530000	126790000	97739000	383950000	205890000	178060000	26311	1205	24920	164383;164384;164385;164386;164387;164388	222572;222573;222574;222575;222576;222577;222578	222578			6	
ITEGQAAK	1	Unmodified	816.43413	0.43413207	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.3388	5.9928	2	0.037165	4009	160511_QHF_FH_JSI12i_1	40.103	0			1.4106	1.4736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4106	1.4736	NaN	1	0	Median	78995000	35878000	43118000	0	0	0	0	0	0	0	0	0	78995000	35878000	43118000	26312	4404	24921	164389	222579	222579			1	
ITEGVSDTNSK	1	Unmodified	1149.5513	0.55134667	3437	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.231	11.101	2	0.0057376	8773	160511_QHF_FH_JSI11i_1	62.823	37.086			1.0764	1.0326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0764	1.0326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31359000	16554000	14805000	0	0	0	0	0	0	31359000	16554000	14805000	0	0	0	26313	3437	24922	164390	222580	222580			1	
ITEIELRK	1	Unmodified	1000.5917	0.59169534	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	27.301	27.272	2;3	0.0011331	23413	160511_QHF_FH_JSI11i_3	60.91	21.948			1.2222	1.1979	63.789	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82663	0.79435	NaN	1	0	Median	1.8069	1.8064	73.688	3	1	Median	215890000	95007000	120880000	0	0	0	0	0	0	61948000	25350000	36598000	153940000	69657000	84281000	26314	5214	24923	164391;164392;164393;164394	222581;222582;222583;222584	222581			4	
ITEIYEGTSEIQR	0	Unmodified	1537.7624	0.76240208	1093	P16219	ACADS	Short-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	45.433	44.944	2	0.0076416	40836	160511_QHF_FH_JSI12i_1	49.5	32.869			0.45045	0.77348	38.243	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.71031	0.80496	NaN	1	1	Median	0.42193	0.40722	NaN	1	1	Median	0.72672	0.77348	NaN	1	1	Median	82041000	46959000	35082000	0	0	0	31037000	14844000	16193000	28791000	20803000	7987500	22213000	11312000	10901000	26315	1093	24924	164395;164396;164397;164398	222585;222586;222587;222588	222587			4	
ITELFAVALPQLLAK	1	Unmodified	1625.9756	0.97562974	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	102.17	102.05	3	4.4124E-05	89865	160511_QHF_FH_JSI11i_2	105	92.978			1.0299	1.1871	10.172	3	3	Median	NaN	NaN	NaN	0	0	Median	0.84723	1.046	NaN	1	1	Median	1.246	1.2791	NaN	1	1	Median	1.0299	1.1871	NaN	1	1	Median	227430000	114750000	112680000	0	0	0	66650000	36343000	30308000	94167000	42793000	51373000	66614000	35612000	31002000	26316	3521	24925	164399;164400;164401;164402	222589;222590;222591;222592	222590			4	
ITELYKQYDFGK	2	Acetyl (K)	1545.7715	0.7715102	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		74.142	63.626	2	0.0011126	31789	160513_QHF_FH_JSI10Kac_5	82.379	67.113			0.67977	0.80766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67977	0.80766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4540600	2990600	1550000	0	0	0	4540600	2990600	1550000	0	0	0	0	0	0	26317	4983	24926	164403;164404;164405	222593;222594;222595	222595	3282		3	
ITENIGCVMTGMTADSR	0	Unmodified	1854.8274	0.82740365	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	10	6								3	4	5	4	66.656	66.001	2;3	2.4109E-32	57609	160511_QHF_FH_JSI11i_2	146	116.26			1.2138	1.176	20.175	13	8	Median	1.4063	1.1388	11.115	2	2	Median	1.0341	1.2236	11.853	4	2	Median	0.98129	0.97775	10.01	4	2	Median	1.3273	1.3665	21.652	3	2	Median	982540000	467400000	515140000	130380000	47995000	82381000	284840000	138200000	146640000	372630000	193980000	178650000	194700000	87232000	107460000	26318	1922	24927	164406;164407;164408;164409;164410;164411;164412;164413;164414;164415;164416;164417;164418;164419;164420;164421	222596;222597;222598;222599;222600;222601;222602;222603;222604;222605;222606;222607;222608;222609;222610;222611;222612;222613;222614;222615;222616	222614			21	
ITENSIVENLK	1	Unmodified	1258.6769	0.67688153	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	1	2	54.743	53.969	2	0.0016434	47382	160511_QHF_FH_JSI9i_2	66.758	46.761			0.93662	1.0081	13.047	5	1	Median	1.2023	1.0436	NaN	1	1	Median	0.66649	0.79453	NaN	1	0	Median	1.1518	1.1265	NaN	1	0	Median	0.91624	0.99553	1.7749	2	0	Median	522800000	246430000	276370000	78364000	38628000	39736000	132280000	73758000	58520000	141380000	45054000	96327000	170780000	88987000	81789000	26319	2332	24928	164422;164423;164424;164425;164426;164427	222617;222618;222619;222620;222621;222622;222623	222623			7	
ITESEEVVSR	0	Unmodified	1147.5721	0.57208211	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.81	4	4				3	2			2	3	4	4	24.376	20.882	2	4.6404E-05	17946	160511_QHF_FH_JSI9i_1	93.649	60.808			0.99341	1.0588	10.868	13	0	Median	1.3715	1.1455	4.2014	2	0	Median	0.87713	1.055	3.2804	3	0	Plateau	1.0313	1.0121	20.036	4	0	Median	1.0161	1.0696	4.2854	4	0	Linear	10256000000	4836000000	5420000000	2554000000	1138300000	1415700000	2673000000	1241100000	1431900000	2449600000	1101800000	1347800000	2579400000	1354800000	1224700000	26320	791	24929	164428;164429;164430;164431;164432;164433;164434;164435;164436;164437;164438;164439;164440	222624;222625;222626;222627;222628;222629;222630;222631;222632;222633;222634;222635;222636;222637	222632			14	
ITESVAETAQTIK	1	Unmodified	1389.7351	0.73512469	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.228	39.593	2	3.3865E-05	35016	160511_QHF_FH_JSI9i_1	117.09	93.718			0.95571	1.0965	12.664	4	0	Linear	1.4224	1.1884	NaN	1	0	Median	0.86243	1.0117	NaN	1	0	Median	1.0367	0.98761	NaN	1	0	Median	1.2199	1.284	NaN	1	0	Median	548760000	251620000	297150000	95930000	40696000	55235000	158980000	79665000	79314000	154080000	64309000	89773000	139770000	66945000	72827000	26321	3961	24930	164441;164442;164443;164444	222638;222639;222640;222641;222642;222643	222643			6	
ITESVAETAQTIKK	2	Unmodified	1517.8301	0.83008771	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	33.391	33.323	3	6.9486E-06	28184	160511_QHF_FH_JSI12i_3	118.51	101.57			2.3235	2.238	88.977	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3235	2.238	NaN	1	1	Median	1.277	1.298	117.71	2	2	Median	697690000	284280000	413410000	0	0	0	0	0	0	170340000	65324000	105020000	527340000	218960000	308390000	26322	3961	24931	164445;164446;164447	222644;222645;222646	222646			3	
ITEYLCEPLRK	1	Unmodified	1420.7384	0.73843593	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	43.615	43.215	3	0.0021057	38067	160511_QHF_FH_JSI11i_3	49.448	38.008			0.44458	0.54431	155.5	3	2	Median	NaN	NaN	NaN	0	0	Median	0.44458	0.54431	NaN	1	1	Median	0.18039	0.17117	NaN	1	0	Median	3.617	3.719	NaN	1	1	Median	509660000	220520000	289140000	0	0	0	62176000	34051000	28125000	125900000	112950000	12944000	321590000	73520000	248070000	26323	2046;2296	24932	164448;164449;164450	222647;222648;222649	222647			3	
ITFADFHR	0	Unmodified	1005.5032	0.50321468	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	47.509	46.633	3	0.00038667	41009	160511_QHF_FH_JSI11i_3	78.516	71.136			0.8721	0.95192	7.1228	5	0	Median	1.3513	1.074	NaN	1	0	Median	0.83528	0.96589	2.0613	2	0	Median	1.0246	0.94446	NaN	1	0	Median	0.85535	0.88263	NaN	1	0	Median	1728400000	850260000	878160000	440400000	187010000	253390000	478360000	226110000	252250000	365640000	201630000	164010000	444030000	235510000	208520000	26324	3649	24933	164451;164452;164453;164454;164455	222650;222651;222652;222653;222654;222655;222656;222657	222651			8	
ITFCTGIR	0	Unmodified	966.49569	0.49568646	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	46.956	46.354	2	0.016537	39614	160511_QHF_FH_JSI12i_3	49.442	29.805			0.98053	1.1297	19.101	3	0	Median	NaN	NaN	NaN	0	0	Median	0.98053	1.1297	NaN	1	0	Median	0.88406	0.83471	NaN	1	0	Median	1.1664	1.1884	NaN	1	0	Median	594480000	308520000	285960000	0	0	0	125640000	75665000	49974000	228350000	118340000	110010000	240490000	114510000	125970000	26325	1842	24934	164456;164457;164458	222658	222658			1	
ITFDAFPGEPDK	1	Unmodified	1335.6347	0.63468237	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	68.877	68.156	2	7.3808E-05	62069	160511_QHF_FH_JSI11i_1	94.616	79.465			1.1126	1.072	24.521	7	2	Median	1.3463	1.1322	24.05	2	0	Median	0.78091	0.91377	NaN	1	0	Median	1.3165	1.3405	31.612	2	1	Median	0.90007	0.98256	25.197	2	1	Median	1562200000	764100000	798100000	365600000	148810000	216790000	388530000	226200000	162330000	433880000	201850000	232030000	374190000	187240000	186950000	26326	2323	24935	164459;164460;164461;164462;164463;164464;164465	222659;222660;222661;222662;222663;222664;222665;222666;222667;222668	222660			10	
ITFDDYIACCVK	1	Unmodified	1503.6738	0.67378676	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	75.073	74.381	2	0.0061906	67474	160511_QHF_FH_JSI10i_1	61.65	47.443			2.3688	2.3441	61.547	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.68953	0.77914	NaN	1	1	Median	2.3688	2.3441	NaN	1	0	Median	2.0619	2.1752	NaN	1	0	Median	74840000	25987000	48853000	0	0	0	17912000	10410000	7502000	33256000	9126400	24129000	23672000	6450300	17222000	26327	1361	24936	164466;164467;164468	222669;222670;222671	222670			3	
ITFDVAPSRLDFTVEHDSLK	1	Unmodified	2289.1641	0.1641118	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		81.943	81.516	4	0.00018111	72742	160511_QHF_FH_JSI11i_3	60.602	52.123			0.59272	0.61054	42.904	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.7886	0.91074	NaN	1	0	Median	0.90027	0.84434	60.36	2	1	Median	NaN	NaN	NaN	0	0	Median	188230000	104700000	83526000	0	0	0	58670000	31667000	27003000	129560000	73033000	56524000	0	0	0	26328	2638;2895	24937	164469;164470;164471	222672;222673;222674	222672			3	
ITFHGEGDQEPGLEPGDIIIVLDQK	1	Unmodified	2719.3705	0.37047576	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.07	100.94	3	0.001143	88610	160511_QHF_FH_JSI11i_2	48.337	44.922			1.1032	1.1143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1032	1.1143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69949000	26291000	43658000	0	0	0	0	0	0	69949000	26291000	43658000	0	0	0	26329	1376	24938	164472	222675	222675			0	
ITFLDTPGHAAFSAMR	0	Unmodified	1733.8559	0.85592531	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		73.447	72.478	3	3.0502E-05	60782	160511_QHF_FH_JSI10i_3	65.225	57.995			1.0525	0.95937	2.607	3	1	Plateau	1.2074	0.95937	NaN	1	0	Median	0.86215	0.98249	NaN	1	0	Median	1.0525	1.0107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	141040000	66426000	74616000	50481000	22112000	28369000	35695000	17280000	18415000	54865000	27033000	27832000	0	0	0	26330	1584	24939	164473;164474;164475	222676;222677;222678	222678			3	
ITFLLQAIR	0	Unmodified	1073.6597	0.65971533	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	83.796	75.725	2	1.207E-11	42740	160513_QHF_FH_JSI10Kac_6	160.63	99.948			3.6351	3.1116	174.39	7	7	Median	1.1482	0.98331	162.91	2	2	Median	0.7268	0.85434	309.49	2	2	Median	1.2417	1.1723	197.83	2	2	Median	4.3214	4.584	NaN	1	1	Median	4265900000	1934000000	2331900000	911070000	380150000	530920000	2192100000	1116500000	1075600000	807180000	345930000	461250000	355590000	91464000	264130000	26331	127	24940	164476;164477;164478;164479;164480;164481;164482	222679;222680;222681;222682;222683;222684;222685	222684			7	
ITFSDVRPNQQEYK	1	Unmodified	1723.8529	0.85294842	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		45.298	44.243	3	0.0366	36231	160511_QHF_FH_JSI9i_3	30.998	18.975			1.1338	0.97987	11.695	3	0	Median	1.2159	0.97987	NaN	1	0	Median	0.69901	0.84572	NaN	1	0	Median	1.1338	1.0655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	255690000	126710000	128970000	96386000	48458000	47928000	84813000	41561000	43252000	74486000	36694000	37793000	0	0	0	26332	3306	24941	164483;164484;164485	222686	222686			1	
ITFTALSSEK	1	Unmodified	1095.5812	0.58119023	2166	Q01167	FOXK2	Forkhead box protein K2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.459	52.342	2	0.016324	44845	160511_QHF_FH_JSI12i_3	50.353	36.196			0.8405	0.84863	21.997	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77546	0.72638	NaN	1	1	Median	0.911	0.99145	NaN	1	1	Median	115490000	66466000	49025000	0	0	0	0	0	0	41414000	23853000	17561000	74077000	42613000	31464000	26333	2166	24942	164486;164487	222687;222688	222688			2	
ITGAEPIFIDANFQSTVPGGPIGGQTR	0	Unmodified	2742.3977	0.39769356	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			96.662	96.677	3	7.1218E-05	87659	160511_QHF_FH_JSI10i_1	49.186	42.155			1.5098	1.6796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5098	1.6796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18879000	4965600	13914000	0	0	0	18879000	4965600	13914000	0	0	0	0	0	0	26334	2678	24943	164488	222689	222689			1	
ITGCASPGK	1	Unmodified	889.43275	0.43275186	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	9.8416	2.6396	2	0.047811	3919	160513_QHF_FH_JSI12Kac_3	42.599	12.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26335	1722	24944	164489;164490	222690;222691	222691			2	
ITGDPYK	1	Unmodified	792.40177	0.4017693	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				15.379	14.36	2	0.035052	11675	160511_QHF_FH_JSI9i_1	50.966	50.966			1.6728	1.3222	NaN	1	1	Median	1.6728	1.3222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1131000000	568040000	563000000	1131000000	568040000	563000000	0	0	0	0	0	0	0	0	0	26336	3966	24945	164491	222692	222692			1	
ITGEAFVQFASQELAEK	1	Unmodified	1866.9363	0.9363437	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	6.57	4	8	6						9	6	6	8	7	97.412	94.694	2;3	6.91E-81	86550	160511_QHF_FH_JSI12i_2	269.95	237.7			0.97853	0.98306	24.63	25	3	Median	0.93505	0.79283	15.767	5	1	Median	0.75292	0.89615	22.009	5	1	Median	1.1129	1.0606	27.826	8	1	Median	1.0841	1.0914	11.976	7	0	Median	11562000000	5878900000	5682900000	960980000	466480000	494500000	1539300000	885740000	653540000	4800400000	2389500000	2411000000	4261000000	2137200000	2123800000	26337	1775	24946	164492;164493;164494;164495;164496;164497;164498;164499;164500;164501;164502;164503;164504;164505;164506;164507;164508;164509;164510;164511;164512;164513;164514;164515;164516;164517;164518	222693;222694;222695;222696;222697;222698;222699;222700;222701;222702;222703;222704;222705;222706;222707;222708;222709;222710;222711;222712;222713;222714;222715;222716;222717;222718;222719;222720;222721;222722;222723;222724;222725;222726;222727;222728;222729;222730;222731;222732;222733;222734;222735;222736;222737;222738;222739	222703			47	
ITGEIMHALK	1	Unmodified	1111.606	0.6059652	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		40.891	40.387	3	0.00089547	35397	160511_QHF_FH_JSI9i_2	56.043	39.205			3.203	3.1928	67.471	3	2	Median	1.4263	1.2601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.9324	3.865	27.021	2	2	Median	NaN	NaN	NaN	0	0	Median	120250000	28659000	91589000	30559000	11445000	19114000	0	0	0	89689000	17214000	72475000	0	0	0	26338	4937	24947	164519;164520;164521	222740;222741;222742	222741			3	
ITGHFYACQVAQR	0	Unmodified	1549.746	0.74598093	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		41.131	32.039	3	8.1729E-06	17845	160513_QHF_FH_JSI10Kac_6	91.914	86.191			0.903	1.0829	12.87	3	1	Plateau	1.1872	0.97745	NaN	1	0	Median	0.903	1.0829	NaN	1	0	Median	0.87445	0.83855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48599000	26993000	21605000	6424900	2907500	3517300	31450000	19214000	12236000	10724000	4872100	5851700	0	0	0	26339	132	24948	164522;164523;164524	222743;222744;222745;222746;222747	222747			5	
ITGMLLEIDNSELLHMLESPESLR	0	Unmodified	2739.3823	0.38230278	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.17	6.84		2	1						3	1		2	3	99.702	94.958	3;4	2.3533E-21	89818	160511_QHF_FH_JSI11i_2	135.54	122.22			1.1741	1.2241	38.278	6	2	Median	0.78856	0.68336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3057	1.2799	16.855	2	1	Median	1.2476	1.3189	44.543	3	1	Median	1280900000	554340000	726590000	106350000	57794000	48561000	0	0	0	750610000	313890000	436710000	423970000	182650000	241320000	26340	2385;1009	24949	164525;164526;164527;164528;164529;164530	222748;222749;222750;222751;222752	222750			5	
ITGMLLEIDNSELLHMLESPESLR	0	2 Oxidation (M)	2771.3721	0.37213202	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	2	0				By MS/MS	3	0			1										1	101.08	101.09	3	0.018762	87711	160511_QHF_FH_JSI12i_3	32.507	20.311			1.2214	1.2528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2214	1.2528	NaN	1	1	Median	65951000	20572000	45379000	0	0	0	0	0	0	0	0	0	65951000	20572000	45379000	26341	2385;1009	24949	164531	222753	222753		594;595	1	
ITGNMGLAMK	1	Unmodified	1034.5253	0.52527203	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	3	3	2							1	2	3	2	41.518	40.699	2	0.00026475	34830	160511_QHF_FH_JSI12i_2	79.906	54.17			1.0161	0.99691	22.465	7	1	Median	1.1457	0.95309	NaN	1	1	Median	0.80833	0.97961	34.257	2	0	Median	0.95444	0.94499	11.718	2	0	Median	1.1421	1.2256	29.213	2	0	Median	1031500000	425120000	606420000	46027000	15239000	30788000	331130000	141960000	189180000	375190000	161260000	213930000	279190000	106660000	172530000	26342	1207	24950	164532;164533;164534;164535;164536;164537;164538;164539	222754;222755;222756;222757;222758;222759;222760;222761;222762;222763	222757			10	
ITGSHKTEQR	1	Acetyl (K)	1197.6102	0.61019895	5405	Q9ULM3	YEATS2	YEATS domain-containing protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	2	2	2	2	6.8525	-1.6666	3	6.241E-05	2299	160513_QHF_FH_JSI11Kac_6	92.866	83.928			1.2244	1.1529	34.634	8	0	Median	1.2525	1.0482	5.379	2	0	Median	1.0545	1.2513	20.159	2	0	Median	1.8704	1.8398	58.105	2	0	Median	1.2962	1.3988	35.34	2	0	Median	183710000	74822000	108880000	24762000	10799000	13963000	42680000	18972000	23708000	70248000	25772000	44476000	46017000	19279000	26738000	26343	5405	24951	164540;164541;164542;164543;164544;164545;164546;164547	222764;222765;222766;222767;222768;222769;222770;222771;222772;222773;222774;222775;222776;222777	222768	3400		14	
ITGYKSHAK	2	Acetyl (K)	1045.5556	0.55564418	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	13.743	5.5401	3	0.0043548	5124	160513_QHF_FH_JSI11Kac_6	50.108	36.754			0.14856	0.15371	81.514	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29193	0.27354	NaN	1	0	Median	0.075601	0.086371	NaN	1	1	Median	12900000	10075000	2825200	0	0	0	0	0	0	10232000	7461700	2770100	2668300	2613200	55136	26344	2282	24952	164548;164549	222778;222779	222778	2377		2	
ITHGFQLK	1	Unmodified	942.5287	0.52870115	4167	Q96LI5	CNOT6L	CCR4-NOT transcription complex subunit 6-like	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.816	23.496	3	0.027521	18915	160511_QHF_FH_JSI9i_3	63.48	52.606			1.7229	1.4065	NaN	1	0	Median	1.7229	1.4065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37756000	15304000	22452000	37756000	15304000	22452000	0	0	0	0	0	0	0	0	0	26345	4167	24953	164550	222780	222780			0	
ITHLSTLQVGSLNVK	1	Unmodified	1608.9199	0.91990577	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.28	6.17		1	11						6	4	5	5	4	61.145	57.742	2;3	9.5505E-28	51240	160511_QHF_FH_JSI11i_3	156.36	112.85			0.93056	0.97116	35.916	16	7	Median	1.3708	1.1166	19.278	4	1	Median	1.0183	1.1673	56.624	5	3	Median	0.837	0.8103	15.91	3	1	Median	0.85801	0.89124	14.588	4	2	Median	2783200000	1374500000	1408700000	476890000	190540000	286350000	854230000	540820000	313410000	629260000	260840000	368420000	822780000	382300000	440480000	26346	2764	24954	164551;164552;164553;164554;164555;164556;164557;164558;164559;164560;164561;164562;164563;164564;164565;164566;164567;164568	222781;222782;222783;222784;222785;222786;222787;222788;222789;222790;222791;222792;222793;222794;222795;222796;222797;222798;222799;222800;222801;222802;222803;222804;222805;222806	222784			26	
ITHPVYSLYFPEEK	1	Unmodified	1721.8665	0.86647322	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		6	6						2	3	3	3	5	65.888	63.937	2;3	3.0161E-05	56652	160511_QHF_FH_JSI10i_2	82.55	71.288			0.85329	0.94228	60.409	12	6	Median	0.41373	0.3572	133.83	2	1	Median	0.80153	0.95354	16.385	3	1	Median	0.82225	0.81457	5.2606	2	1	Median	1.0353	1.0465	20.866	5	3	Median	2767500000	1445600000	1321900000	253260000	170140000	83121000	273700000	140070000	133620000	733790000	407740000	326050000	1506800000	727660000	779130000	26347	5285	24955	164569;164570;164571;164572;164573;164574;164575;164576;164577;164578;164579;164580;164581;164582	222807;222808;222809;222810;222811;222812;222813;222814;222815;222816;222817;222818;222819;222820;222821;222822;222823;222824;222825;222826	222820			20	
ITHVVSSTMMAGLLR	0	Unmodified	1614.8586	0.85856784	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		74.576	65.919	3	3.7492E-11	35208	160513_QHF_FH_JSI9Kac_6	94.09	81.463			0.98277	0.94126	14.514	4	2	Median	1.1991	1.0082	NaN	1	0	Median	0.74566	0.87878	NaN	1	0	Median	0.98277	0.98128	22.81	2	2	Median	NaN	NaN	NaN	0	0	Median	235450000	131970000	103480000	59510000	29436000	30073000	102230000	62869000	39358000	73714000	39664000	34050000	0	0	0	26348	3639	24956	164583;164584;164585;164586	222827;222828;222829;222830;222831	222830			5	
ITIAAYLPLK	1	Unmodified	1101.6798	0.67978207	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	3	2	2	86.676	83.642	2	3.3574E-05	41546	160513_QHF_FH_JSI9Kac_6	103.83	89.676			0.98908	1.0114	16.216	9	0	Median	1.3104	1.1253	15.089	2	0	Median	0.91976	1.083	16.721	3	0	Median	0.99113	0.94634	0.54004	2	0	Median	1.1379	1.1949	24.285	2	0	Median	593220000	285920000	307300000	246660000	98300000	148360000	182060000	105450000	76607000	90450000	43672000	46777000	74055000	38495000	35559000	26349	3734	24957	164587;164588;164589;164590;164591;164592;164593;164594;164595	222832;222833;222834;222835;222836;222837	222834			6	
ITIADCGQLE	0	Unmodified	1118.5278	0.52777445	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	4.74	7			2	1					2	2	3	3	58.782	55.482	1;2	0.00040033	50332	160511_QHF_FH_JSI11i_1	70.919	53.099			1.0527	1.1424	17.54	10	2	Median	1.2899	1.0515	19.022	2	0	Median	0.97256	1.1424	0.24171	2	1	Median	0.93416	0.90889	9.5326	3	1	Median	1.0797	1.1519	15.531	3	0	Plateau	2570700000	1294800000	1275900000	312670000	142040000	170640000	537400000	280380000	257020000	1037200000	579390000	457790000	683420000	292950000	390470000	26350	2040	24958	164596;164597;164598;164599;164600;164601;164602;164603;164604;164605	222838;222839;222840;222841;222842;222843;222844;222845;222846;222847;222848	222838			10	
ITIGQAPTEK	1	Unmodified	1056.5815	0.58152458	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	32.03	31.268	2	3.5815E-05	26985	160511_QHF_FH_JSI9i_2	95.642	71.849			0.89837	0.90479	11.226	8	0	Median	1.149	0.96481	11.436	2	0	Median	0.79879	0.97356	15.815	2	0	Median	0.86822	0.85968	4.4132	2	0	Median	0.94082	1.0126	13.566	2	0	Median	2874100000	1487200000	1386900000	618760000	288000000	330760000	765260000	412570000	352680000	834110000	426760000	407340000	655960000	359830000	296130000	26351	1004	24959	164606;164607;164608;164609;164610;164611;164612;164613	222849;222850;222851;222852;222853;222854;222855;222856;222857;222858;222859;222860	222856			12	
ITIGQAPTEKGHTR	1	Acetyl (K)	1549.8213	0.82125436	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	40.105	30.821	3	0.00053672	17216	160513_QHF_FH_JSI10Kac_6	68.173	56.903			0.91303	1.0003	23.288	5	0	Median	1.2746	1.0925	NaN	1	0	Median	1.0067	1.214	NaN	1	0	Median	0.67072	0.65722	NaN	1	0	Median	0.89778	0.98509	2.161	2	0	Median	72163000	36915000	35249000	11413000	5026800	6385800	21965000	9871500	12094000	19654000	11971000	7682900	19131000	10045000	9086000	26352	1004	24960	164614;164615;164616;164617;164618	222861;222862;222863;222864;222865	222865	800		5	
ITIGQGNTEK	1	Unmodified	1059.556	0.55603812	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		20.019	19.455	2	0.025656	16706	160511_QHF_FH_JSI10i_2	48.283	14.486			0.84196	0.92301	24.749	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89542	1.0995	NaN	1	1	Median	0.7917	0.77483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50889000	28514000	22374000	0	0	0	9091300	6109600	2981600	41797000	22405000	19392000	0	0	0	26353	3141	24961	164619;164620	222866;222867	222867			2	
ITIGQGNTEKGHYR	1	Acetyl (K)	1614.8114	0.81141795	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	38.55	29.508	3	0.0018978	16532	160513_QHF_FH_JSI10Kac_6	55.841	43.925			0.84234	0.99538	11.032	3	0	Plateau	1.205	1.0632	NaN	1	0	Median	0.84234	0.99538	NaN	1	0	Median	0.86262	0.85726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12423000	7031300	5391600	3039500	1842500	1197000	6081900	3206900	2875000	3301400	1981900	1319600	0	0	0	26354	3141	24962	164621;164622;164623;164624	222868;222869;222870;222871;222872	222872	2779		5	
ITILQNASITPVK	1	Unmodified	1396.829	0.8289655	2838	Q4L180	FILIP1L	Filamin A-interacting protein 1-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	103.32	103.23	2	0.055671	93817	160511_QHF_FH_JSI12i_1	35.944	0			0.90932	0.92289	15.46	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.043	1.0295	NaN	1	0	Median	0.79273	0.82732	NaN	1	0	Median	283150000	135110000	148050000	0	0	0	0	0	0	128870000	59337000	69533000	154280000	75770000	78513000	26355	2838	24963	164625;164626	222873;222874	222874			2	
ITILVTHQLQYLK	1	Unmodified	1568.929	0.92901389	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	76.978	68.343	2;3	1.3404E-10	37171	160513_QHF_FH_JSI11Kac_6	128.01	102.36			1.0919	1.6753	29.519	4	4	Linear	1.5612	1.3621	NaN	1	1	Median	1.2016	1.4303	NaN	1	1	Median	0.99222	0.93436	NaN	1	1	Median	0.72878	0.77742	NaN	1	1	Median	1263500000	587430000	676060000	300730000	97350000	203380000	735280000	373280000	362000000	137100000	59503000	77601000	90379000	57296000	33082000	26356	292	24964	164627;164628;164629;164630;164631;164632;164633	222875;222876;222877;222878;222879;222880;222881	222876			7	
ITINSHTTAGEVVEK	1	Unmodified	1597.8312	0.83115034	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	36.194	36.049	3	8.8962E-05	30651	160511_QHF_FH_JSI12i_3	93.226	75.088			1.1009	1.1101	35.946	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1009	1.1101	35.946	2	2	Median	201580000	86596000	114980000	0	0	0	0	0	0	0	0	0	201580000	86596000	114980000	26357	4876	24965	164634;164635	222882;222883	222883			2	
ITIPDIKK	2	Unmodified	926.58007	0.58006802	199	O14757	CHEK1	Serine/threonine-protein kinase Chk1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	44.262	44.024	3	0.016381	37529	160511_QHF_FH_JSI12i_3	40.882	24.342			1.0433	1.0577	8.5849	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0433	1.0577	8.5849	2	2	Median	93538000	48974000	44564000	0	0	0	0	0	0	0	0	0	93538000	48974000	44564000	26358	199	24966	164636;164637	222884;222885	222885			2	
ITIPITPAFLGQLR	0	Unmodified	1538.9184	0.91844921	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.64	101.46	2	0.00088976	82386	160511_QHF_FH_JSI9i_3	67.726	47.422			2.5476	2.0883	NaN	1	0	Median	2.5476	2.0883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21511000	6034300	15477000	21511000	6034300	15477000	0	0	0	0	0	0	0	0	0	26359	2910	24967	164638	222886	222886			1	
ITIPPHLAYGENGTGDK	1	Unmodified	1781.8948	0.89481323	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.9	0.3		1	9							1		3	6	54.66	54.352	3	2.4868E-05	47518	160511_QHF_FH_JSI11i_3	76.713	56.875			1.1508	1.1582	53.376	8	5	Median	4.7653	4.0289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1298	1.0559	NaN	1	1	Median	1.1294	1.1582	29.76	6	3	Median	430070000	207080000	222990000	8969900	1224500	7745400	0	0	0	49734000	16760000	32974000	371360000	189090000	182270000	26360	3973	24968	164639;164640;164641;164642;164643;164644;164645;164646;164647;164648	222887;222888;222889;222890;222891;222892;222893;222894;222895;222896;222897;222898	222888			11	
ITISPLQELTLYNPER	0	Unmodified	1886.0149	0.014928368	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	3	2	100.78	100.68	2;3	2.099E-22	89170	160511_QHF_FH_JSI10i_2	217.12	203.62			0.91058	0.97697	18.171	8	3	Median	1.0058	0.84327	28.989	2	0	Median	0.77792	0.96561	NaN	1	0	Median	0.99123	1.0028	12.988	3	3	Plateau	1.03	1.0903	21.099	2	0	Median	611590000	317450000	294140000	92791000	42144000	50647000	60047000	32459000	27589000	286920000	152530000	134390000	171840000	90324000	81512000	26361	132	24969	164649;164650;164651;164652;164653;164654;164655;164656	222899;222900;222901;222902;222903;222904;222905;222906;222907;222908;222909;222910	222909			12	
ITISSLQDLTLYNPER	0	Unmodified	1861.9785	0.97854286	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.556	2	11	3							4	3	4	5	96.001	95.801	2;3	3.2911E-41	82908	160511_QHF_FH_JSI12i_3	242.27	211.4			0.82141	0.83933	27.858	15	11	Median	0.92813	0.80979	39.861	4	4	Median	0.83548	1.0106	6.0932	2	1	Median	0.79321	0.78797	20.836	4	2	Median	0.81122	0.83933	29.949	5	4	Median	493590000	247020000	246560000	136640000	66122000	70517000	64208000	33155000	31053000	148710000	77161000	71545000	144030000	70587000	73448000	26362	5153	24970	164657;164658;164659;164660;164661;164662;164663;164664;164665;164666;164667;164668;164669;164670;164671;164672	222911;222912;222913;222914;222915;222916;222917;222918;222919;222920;222921;222922;222923;222924;222925;222926;222927;222928;222929	222928			19	
ITITGYR	0	Unmodified	822.45995	0.45995289	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0				By MS/MS	3	0			1										1	33.408	33.298	2	0.048713	28240	160511_QHF_FH_JSI12i_3	43.124	28.711			1.3767	1.4271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3767	1.4271	NaN	1	0	Median	204550000	85439000	119110000	0	0	0	0	0	0	0	0	0	204550000	85439000	119110000	26363	2638;2895	24971	164673	222930	222930			1	
ITITNDK	1	Unmodified	803.43888	0.43888309	985;954;1827;1416;1108	P0DMV9;P0DMV8;P11142;P54652;P34931;P17066	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA1L;HSPA6	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.5	6.04	3		1			2	2			1	2	2	3	20.382	16.279	2	0.01291	10209	160513_QHF_FH_JSI12Kac_4	77.282	14.565			1.1383	1.1897	28.04	8	0	Median	0.90019	0.75014	NaN	1	0	Median	0.70892	0.83465	46.133	2	0	Median	1.2345	1.2238	5.8376	2	0	Median	1.1631	1.2134	1.7013	3	0	Median	7760600000	3508800000	4251800000	97562000	44861000	52701000	318470000	186630000	131840000	467650000	200360000	267290000	6876900000	3077000000	3799900000	26364	954;985;1827;1416;1108	24972	164674;164675;164676;164677;164678;164679;164680;164681	222931;222932;222933;222934;222935;222936;222937;222938	222938			8	
ITITNDQNR	0	Unmodified	1073.5465	0.54653606	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.54	5	4	2			2	3			3	3	4	6	19.717	16.836	2	2.1666E-06	14465	160511_QHF_FH_JSI10i_2	127.56	70.387			1.0351	0.81144	17.059	16	3	Linear	1.0528	0.8816	10.315	3	0	Plateau	0.78072	0.93517	20.395	3	1	Median	1.043	1.0284	8.83	4	0	Linear	1.0118	1.1056	19.383	6	2	Median	19698000000	10434000000	9263500000	3512100000	1796300000	1715800000	3979600000	2433900000	1545600000	3786600000	1632600000	2154000000	8419300000	4571200000	3848100000	26365	982	24973	164682;164683;164684;164685;164686;164687;164688;164689;164690;164691;164692;164693;164694;164695;164696;164697	222939;222940;222941;222942;222943;222944;222945;222946;222947;222948;222949;222950;222951;222952;222953;222954;222955;222956;222957;222958;222959;222960;222961;222962	222960			24	
ITKFENAFLSHVVSQHQALLGTIR	1	Acetyl (K)	2750.4868	0.48678334	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	88.155	79.992	4	9.8719E-34	44232	160513_QHF_FH_JSI11Kac_6	153.84	135.06			0.88287	0.93	69.888	3	0	Median	NaN	NaN	NaN	0	0	Median	1.234	1.4316	NaN	1	0	Median	0.39005	0.36483	NaN	1	0	Median	0.88287	0.93	NaN	1	0	Median	606110000	323440000	282670000	0	0	0	177680000	82884000	94798000	182220000	122820000	59396000	246220000	117740000	128480000	26366	1263	24974	164698;164699;164700	222963;222964	222963	1159		1	
ITKPGSIDSNNQLFAPGGR	1	Unmodified	1971.0174	0.017387984	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	2	2		49.254	48.39	3	1.1322E-09	39505	160511_QHF_FH_JSI9i_3	120.9	96.709			0.73934	0.71909	30.761	6	3	Median	1.1921	0.99458	39.66	2	1	Median	0.65955	0.77817	17.841	2	0	Median	0.64042	0.60354	18.567	2	2	Median	NaN	NaN	NaN	0	0	Median	904130000	504180000	399950000	298420000	124200000	174220000	314520000	190440000	124080000	291190000	189540000	101650000	0	0	0	26367	2217	24975	164701;164702;164703;164704;164705;164706	222965;222966;222967;222968;222969;222970;222971;222972	222970			8	
ITKSDGIR	1	Acetyl (K)	930.51345	0.51344502	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		28.039	20.03	2	0.044712	12569	160513_QHF_FH_JSI11Kac_4	49.418	14.61			0.74687	0.74149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74687	0.74149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29849000	18919000	10929000	0	0	0	0	0	0	29849000	18919000	10929000	0	0	0	26368	1014	24976	164707	222973	222973			1	
ITLDNAYMEK	1	Oxidation (M)	1212.5696	0.56963927	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.25	6	2				2	3	1		3	4	4	3	44.072	39.328	2	2.0436E-05	44249	160511_QHF_FH_JSI9i_1	101.82	84.305			1.0317	1.1049	31.527	14	2	Median	1.3303	1.0826	61.148	3	0	Median	1.4184	1.7317	20.739	4	0	Linear	1.2675	1.2232	11.255	4	1	Linear	0.98531	1.0236	27.603	3	1	Median	2904800000	1239900000	1664900000	926880000	383160000	543710000	782480000	345920000	436560000	607020000	275360000	331660000	588450000	235450000	352990000	26369	1055	24977	164708;164709;164710;164711;164712;164713;164714;164715;164716;164717;164718;164719;164720;164721	222974;222975;222976;222977;222978;222979;222980;222981;222982;222983;222984;222985;222986;222987;222988;222989	222985		680	16	
ITLDNAYMEK	1	Unmodified	1196.5747	0.57472465	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.04	4	4	2			2	1	3		3	5	5	3	54.386	49.877	2	2.728E-09	45161	160511_QHF_FH_JSI11i_1	127.4	94.557			0.96522	0.99814	11.736	16	0	Median	1.2103	1.06	18.99	3	0	Plateau	0.83628	0.99138	11.363	5	0	Median	1.0773	1.0493	13.044	5	0	Median	0.94616	0.9738	7.0212	3	0	Plateau	48488000000	22897000000	25591000000	10770000000	3999700000	6770600000	12988000000	7011600000	5976200000	12319000000	5208400000	7110900000	12411000000	6677600000	5733100000	26370	1055	24977	164722;164723;164724;164725;164726;164727;164728;164729;164730;164731;164732;164733;164734;164735;164736;164737	222990;222991;222992;222993;222994;222995;222996;222997;222998;222999;223000;223001;223002;223003;223004;223005;223006;223007;223008;223009;223010;223011;223012;223013;223014;223015;223016;223017;223018;223019;223020;223021;223022	222993			33	
ITLECLPQNVGFYK	1	Unmodified	1680.8545	0.85452832	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	83.937	83.088	2	3.5126E-06	73123	160511_QHF_FH_JSI11i_2	124.1	90.875			1.044	1.1068	6.3208	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.1574	NaN	1	1	Median	0.95426	1.0584	NaN	1	0	Median	91133000	46741000	44392000	0	0	0	0	0	0	63003000	32898000	30105000	28129000	13843000	14286000	26371	4048	24978	164738;164739	223023;223024	223024			1	
ITLEGPTEDVNVAQEQIEGMVK	1	Unmodified	2399.189	0.18900592	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	96.343	96.067	2;3	4.4266E-102	86782	160511_QHF_FH_JSI10i_1	257.35	236.69			0.91153	0.90266	15.154	6	0	Median	0.90506	0.73492	2.1102	2	0	Median	0.91026	1.0802	NaN	1	0	Median	0.93225	0.89396	NaN	1	0	Median	0.90473	0.93121	3.0361	2	0	Median	392840000	218510000	174330000	55816000	30753000	25063000	55538000	27098000	28440000	37584000	18772000	18812000	243900000	141890000	102010000	26372	2147	24979	164740;164741;164742;164743;164744;164745	223025;223026;223027;223028;223029;223030;223031;223032;223033;223034;223035;223036;223037;223038;223039;223040;223041;223042	223034			18	
ITLESFLAWK	1	Unmodified	1206.6649	0.66486028	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	94.139	87.479	2	0.0013942	46784	160513_QHF_FH_JSI9Kac_6	98.055	70.751			1.049	1.0448	55.968	5	3	Linear	0.8622	0.74018	NaN	1	0	Median	0.55718	0.64096	NaN	1	1	Median	0.24956	0.2347	NaN	1	1	Median	0.67916	0.69885	55.007	2	1	Median	549050000	345720000	203330000	87533000	42693000	44840000	110430000	70436000	39992000	148540000	124870000	23662000	202550000	107720000	94833000	26373	3754	24980	164746;164747;164748;164749;164750	223043;223044;223045;223046;223047	223044			5	
ITLESFLAWKK	2	Unmodified	1334.7598	0.7598233	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	89.287	87.708	3	6.1351E-05	80071	160511_QHF_FH_JSI11i_3	78.653	71.282			1.1513	1.0517	47.972	5	1	Median	1.1513	0.94336	NaN	1	0	Median	1.3863	1.5799	83.718	2	1	Median	1.3067	1.2122	NaN	1	0	Median	1.0462	1.0517	NaN	1	0	Median	262430000	101800000	160630000	22955000	10126000	12829000	149450000	55657000	93796000	27658000	9391200	18267000	62363000	26623000	35740000	26374	3754	24981	164751;164752;164753;164754;164755	223048;223049;223050;223051;223052;223053;223054;223055;223056;223057;223058;223059;223060;223061;223062	223048			15	
ITLETDEDMVTEIR	0	Unmodified	1663.7975	0.79746695	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	72.504	71.988	2	3.7683E-10	65684	160511_QHF_FH_JSI12i_1	111.63	81.886			0.87104	0.85605	19.623	4	2	Median	0.98917	0.82297	NaN	1	1	Median	0.76703	0.89046	NaN	1	0	Median	1.0247	0.95692	NaN	1	1	Median	0.58808	0.61206	NaN	1	0	Median	282460000	142250000	140200000	45045000	19026000	26019000	103750000	57159000	46589000	69965000	31578000	38387000	63698000	34488000	29210000	26375	2665	24982	164756;164757;164758;164759;164760	223063;223064;223065;223066;223067	223064			5	
ITLEVAK	1	Unmodified	772.46945	0.46945494	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	38.24	37.536	2	0.035999	33464	160511_QHF_FH_JSI10i_1	49.358	9.2554			0.99301	1.0577	9.7925	7	0	Median	1.3364	1.1062	6.3287	2	0	Median	0.87968	1.0719	9.6982	2	0	Median	0.95418	0.92556	5.4256	2	0	Median	1.0885	1.1131	NaN	1	0	Median	700000000	365100000	334900000	144050000	69769000	74282000	215270000	117170000	98095000	273220000	147430000	125790000	67463000	30726000	36738000	26376	1479	24983	164761;164762;164763;164764;164765;164766;164767	223068;223069;223070	223069			3	
ITLHITDASDMTR	0	Unmodified	1472.7293	0.72932781	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	53.355	53.198	2;3	4.6435E-05	45563	160511_QHF_FH_JSI12i_3	78.342	67.19			1.1106	1.0964	2.9825	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1642	1.0774	NaN	1	1	Median	1.0427	1.0833	4.1943	2	2	Median	180250000	84599000	95655000	0	0	0	0	0	0	72604000	35722000	36882000	107650000	48877000	58772000	26377	498	24984	164768;164769;164770;164771	223071;223072;223073;223074	223074			4	
ITLNDLIPAFQNLLK	1	Unmodified	1711.9873	0.98725705	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	103.17	103.17	3	1.8284E-05	89944	160511_QHF_FH_JSI12i_3	75.764	69.869			1.8079	1.7406	0.046847	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.892	1.74	NaN	1	1	Median	1.7276	1.7412	NaN	1	1	Median	104040000	41309000	62729000	0	0	0	0	0	0	28493000	10805000	17688000	75545000	30504000	45041000	26378	1346	24985	164772;164773;164774;164775	223075;223076;223077;223078	223078			4	
ITLPSHPALGTPK	1	Unmodified	1330.7609	0.76088593	4630	Q9H0E3	SAP130	Histone deacetylase complex subunit SAP130	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	49.008	48.77	3	0.00035619	41823	160511_QHF_FH_JSI12i_3	61.409	40.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26379	4630	24986	164776;164777	223079;223080	223080			2	
ITLPVDFVTADK	1	Unmodified	1317.718	0.71801807	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.39	4	4	2				2	5		5	5	3	4	86.795	82.094	2	7.2045E-16	79187	160511_QHF_FH_JSI12i_1	159.83	143.16			0.96829	1.0184	13.819	17	1	Median	1.2243	1.0031	19.881	5	0	Median	0.90393	1.0864	12.279	5	1	Median	1.0521	1.0228	3.5932	3	0	Plateau	0.91218	0.97473	12.614	4	0	Median	17712000000	8359900000	9351700000	3665600000	1699500000	1966100000	4516500000	2178800000	2337700000	5656300000	2598400000	3058000000	3873200000	1883200000	1989900000	26380	775	24987	164778;164779;164780;164781;164782;164783;164784;164785;164786;164787;164788;164789;164790;164791;164792;164793;164794	223081;223082;223083;223084;223085;223086;223087;223088;223089;223090;223091;223092;223093;223094;223095;223096;223097;223098;223099;223100;223101;223102;223103;223104;223105;223106;223107;223108;223109;223110;223111;223112;223113;223114;223115;223116;223117;223118;223119;223120;223121;223122;223123;223124;223125;223126;223127;223128;223129	223096			49	
ITLPVDFVTADKFDENAK	2	Unmodified	2022.031	0.030972363	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.18	4.78	5	8	11					1	3	6	5	8	9	89.154	87.363	2;3	9.3486E-52	77646	160511_QHF_FH_JSI12i_3	254.58	214.95			0.97953	0.94617	23.263	27	9	Median	1.1642	0.99188	28.976	6	2	Median	0.76721	0.90412	3.6835	4	0	Median	0.94933	0.92921	9.7469	8	2	Median	1.0223	1.0181	30.922	9	5	Median	42381000000	19017000000	23364000000	2371000000	1024000000	1346900000	3169600000	1742000000	1427600000	11550000000	5325000000	6225100000	25290000000	10926000000	14364000000	26381	775	24988	164795;164796;164797;164798;164799;164800;164801;164802;164803;164804;164805;164806;164807;164808;164809;164810;164811;164812;164813;164814;164815;164816;164817;164818;164819;164820;164821;164822	223130;223131;223132;223133;223134;223135;223136;223137;223138;223139;223140;223141;223142;223143;223144;223145;223146;223147;223148;223149;223150;223151;223152;223153;223154;223155;223156;223157;223158;223159;223160;223161;223162;223163;223164;223165;223166;223167;223168;223169;223170;223171;223172;223173;223174;223175;223176;223177;223178;223179;223180;223181;223182;223183;223184;223185;223186;223187;223188;223189;223190;223191;223192;223193;223194;223195;223196;223197;223198;223199;223200;223201;223202;223203;223204;223205	223196			76	
ITLQDVVSHSK	1	Unmodified	1225.6667	0.6666512	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.05	2	10	8					1	3	6	6	7	5	56.3	53.971	2;3	2.6086E-09	46105	160511_QHF_FH_JSI12i_3	128.81	69.83			0.91777	0.92677	15.745	24	7	Median	1.1949	0.98358	11.8	6	0	Median	0.78393	0.9071	13.181	6	3	Median	0.95882	0.97059	18.531	7	3	Median	0.79446	0.79565	14.539	5	1	Median	11423000000	5820000000	5602700000	1219600000	492390000	727170000	2801700000	1601100000	1200600000	2946300000	1507800000	1438500000	4455100000	2218700000	2236400000	26382	1600	24989	164823;164824;164825;164826;164827;164828;164829;164830;164831;164832;164833;164834;164835;164836;164837;164838;164839;164840;164841;164842;164843;164844;164845;164846	223206;223207;223208;223209;223210;223211;223212;223213;223214;223215;223216;223217;223218;223219;223220;223221;223222;223223;223224;223225;223226;223227;223228;223229;223230;223231;223232;223233;223234;223235;223236;223237;223238;223239;223240;223241;223242;223243;223244;223245;223246;223247	223245			42	
ITLSKHQNVQLPR	1	Acetyl (K)	1574.8893	0.88927434	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	1	2	1	58.311	48.917	2;3	2.2557E-06	26933	160513_QHF_FH_JSI10Kac_6	102.66	89.783			0.52228	0.55587	157.78	5	1	Median	0.87601	0.75022	NaN	1	0	Median	1.3214	1.5704	NaN	1	0	Median	0.090651	0.088214	176.35	2	1	Median	0.52228	0.55587	NaN	1	0	Median	444590000	261380000	183210000	20084000	8756000	11328000	207180000	90598000	116580000	176160000	134680000	41483000	41169000	27351000	13818000	26383	1281	24990	164847;164848;164849;164850;164851	223248;223249;223250	223250	1196		3	
ITLTSDPR	0	Unmodified	901.4869	0.48689592	1969	P61960	UFM1	Ubiquitin-fold modifier 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	2	3	28.277	26.53	2	0.0049824	22294	160511_QHF_FH_JSI11i_2	67.032	14.349			0.84748	0.8913	20.466	8	2	Median	1.1499	0.97177	NaN	1	0	Median	0.62459	0.75499	19.108	2	1	Median	0.84748	0.83768	13.14	2	0	Median	0.98698	1.0636	25.341	3	1	Median	830740000	435140000	395600000	92345000	37642000	54702000	214340000	124600000	89740000	289370000	151450000	137920000	234680000	121450000	113240000	26384	1969	24991	164852;164853;164854;164855;164856;164857;164858;164859	223251;223252;223253;223254;223255	223254			5	
ITLVSAAPGK	1	Unmodified	955.57023	0.57023162	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.21	4	4	3				3	4		3	5	5	5	43.799	39.301	2	8.0091E-05	34527	160511_QHF_FH_JSI11i_3	87.308	52.5			0.95328	1.0193	16.055	18	1	Median	1.1872	1.0066	19.28	3	0	Median	0.84718	1.0321	7.1791	5	0	Median	1.0028	0.98917	13.707	5	0	Median	0.94569	1.0483	25.199	5	1	Median	3248900000	1559900000	1689000000	492290000	213300000	278990000	815300000	433550000	381740000	1128900000	514900000	614030000	812430000	398150000	414280000	26385	4905	24992	164860;164861;164862;164863;164864;164865;164866;164867;164868;164869;164870;164871;164872;164873;164874;164875;164876;164877	223256;223257;223258;223259;223260;223261;223262;223263;223264;223265;223266;223267;223268;223269;223270;223271;223272;223273;223274;223275;223276;223277;223278;223279;223280	223257			25	
ITLVSSGSGTMGAAK	1	Unmodified	1378.7126	0.71261511	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	43.634	42.662	2	7.9593E-05	36534	160511_QHF_FH_JSI12i_2	113.22	57.675			0.91218	0.80519	11.019	3	0	Median	0.91218	0.80519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95723	0.93997	NaN	1	0	Median	0.70911	0.75946	NaN	1	0	Median	118470000	64474000	53992000	27917000	15476000	12441000	0	0	0	48637000	21499000	27138000	41912000	27498000	14413000	26386	590	24993	164878;164879;164880	223281;223282;223283;223284;223285;223286	223282			6	
ITMELFSNIVPR	0	Unmodified	1418.7592	0.75917137	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	97.232	97.086	2;3	2.1088E-07	83899	160511_QHF_FH_JSI12i_3	132.32	111.23			1.1828	1.1656	10.627	4	0	Median	1.6499	1.414	NaN	1	0	Median	0.97891	1.1178	NaN	1	0	Median	1.2343	1.1849	NaN	1	0	Median	1.1335	1.1466	NaN	1	0	Median	246880000	115350000	131530000	7149600	3301700	3847900	19799000	10850000	8949600	54608000	25735000	28873000	165320000	75460000	89861000	26387	1685	24994	164881;164882;164883;164884;164885	223287;223288;223289;223290;223291	223290			5	
ITMEYSSSGK	1	Unmodified	1101.5012	0.50122535	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				26.5	25.473	2	0.014295	21924	160511_QHF_FH_JSI9i_2	45.368	34.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26388	2314	24995	164886	223292	223292			1	
ITMIAEPLEK	1	Unmodified	1143.6209	0.62094656	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.043	57.539	2	0.024137	49836	160511_QHF_FH_JSI11i_2	48.602	9.0548			0.74713	0.75556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74713	0.75556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	378080000	230600000	147480000	0	0	0	0	0	0	378080000	230600000	147480000	0	0	0	26389	2609	24996	164887	223293	223293			1	
ITMPVIFNEPLSFLQR	0	Unmodified	1904.023	0.022990634	4528	Q9BXW6	OSBPL1A	Oxysterol-binding protein-related protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			6							1	2	1	2	102.25	102.18	2;3	2.8643E-08	89026	160511_QHF_FH_JSI12i_3	154.07	120.66			0.86466	0.92454	19.297	6	1	Median	1.4221	1.2042	NaN	1	0	Median	0.79765	0.93921	8.5198	2	0	Median	1.031	0.96662	NaN	1	0	Median	0.76846	0.75528	15.978	2	1	Median	199680000	107650000	92030000	11385000	3743900	7640700	93340000	53233000	40107000	35708000	17745000	17962000	59244000	32923000	26321000	26390	4528	24997	164888;164889;164890;164891;164892;164893	223294;223295;223296	223296			3	
ITNDFYPEEDGK	1	Unmodified	1426.6252	0.62523989	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	2	2	1	46.302	41.328	2	0.00032626	36809	160511_QHF_FH_JSI10i_1	72.531	57.858			0.98007	0.97642	11.053	6	0	Median	0.99544	0.81952	NaN	1	0	Median	0.85386	1.0033	12.047	2	0	Median	1.0049	0.97642	3.6257	2	0	Median	1.004	1.0948	NaN	1	0	Median	2839700000	1436300000	1403400000	794800000	342240000	452560000	956100000	508170000	447930000	1075800000	579110000	496700000	13007000	6747400	6259200	26391	1867	24998	164894;164895;164896;164897;164898;164899	223297;223298;223299;223300;223301;223302;223303;223304;223305;223306	223301			10	
ITNININQALSILK	1	Unmodified	1553.9141	0.91409211	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	100.53	100.45	2	3.4598E-06	83190	160511_QHF_FH_JSI10i_3	129.84	99.584			1.1794	1.2584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1794	1.2584	NaN	1	1	Median	59000000	34226000	24774000	0	0	0	10832000	10832000	0	0	0	0	48167000	23394000	24774000	26392	1716	24999	164900;164901	223307;223308	223307			2	
ITNLTQQLEQASIVK	1	Unmodified	1684.9359	0.93594977	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.26	4.06	4	11	2					2		3	4	7	5	74.506	73.259	2;3	9.897E-30	66793	160511_QHF_FH_JSI11i_1	188.09	163.24			1.2209	1.2403	28.102	17	10	Median	1.3772	1.209	39.488	3	2	Median	1.0487	1.275	29	4	3	Median	1.3653	1.3212	29.491	6	4	Median	1.1265	1.2344	22.869	4	1	Median	1269000000	618000000	650980000	198770000	95630000	103140000	355620000	181940000	173680000	422940000	209140000	213790000	291650000	131290000	160370000	26393	1085	25000	164902;164903;164904;164905;164906;164907;164908;164909;164910;164911;164912;164913;164914;164915;164916;164917;164918;164919;164920	223309;223310;223311;223312;223313;223314;223315;223316;223317;223318;223319;223320;223321;223322;223323;223324;223325;223326;223327;223328;223329;223330	223311			20	
ITNNINVLIK	1	Unmodified	1140.6867	0.68665836	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			57.975	57.089	2	0.015632	50484	160511_QHF_FH_JSI10i_2	51.193	25.254			0.51105	0.63338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51105	0.63338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111550000	69988000	41565000	0	0	0	111550000	69988000	41565000	0	0	0	0	0	0	26394	4575	25001	164921	223331	223331			1	
ITNQVHGLK	1	Unmodified	1008.5716	0.5716286	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.48		5	8						1	4	4	3	3	14.175	13.216	2;3	3.0098E-05	10185	160511_QHF_FH_JSI12i_3	80.688	60.902			1.1242	1.1529	26.121	14	1	Median	1.3557	1.1344	15.853	4	0	Median	1.0411	1.2458	6.5883	4	0	Median	1.0176	1.0226	14.125	3	0	Median	1.2272	1.2348	51.307	3	1	Plateau	4730900000	2131200000	2599700000	523880000	174660000	349220000	566850000	275300000	291550000	1460000000	714870000	745130000	2180200000	966380000	1213800000	26395	1748	25002	164922;164923;164924;164925;164926;164927;164928;164929;164930;164931;164932;164933;164934;164935	223332;223333;223334;223335;223336;223337;223338;223339;223340;223341;223342;223343;223344;223345;223346;223347;223348	223347			17	
ITNQVHGLKGLNSK	2	Acetyl (K)	1549.8576	0.85763986	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			44.544	35.929	3	0.043589	19903	160513_QHF_FH_JSI10Kac_6	35.757	23.78			3.3373	4.0426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.3373	4.0426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20848000	6515600	14332000	0	0	0	20848000	6515600	14332000	0	0	0	0	0	0	26396	1748	25003	164936	223349	223349	1768		1	
ITNSLTVLCSEK	1	Unmodified	1363.7017	0.70171607	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.83	5.79	1	3					2			1	2	3		54.803	50.69	2	5.6013E-05	43619	160511_QHF_FH_JSI11i_2	108.7	79.739			1.0322	1.0806	45.773	6	4	Median	2.3749	2.0234	NaN	1	1	Median	1.1363	1.3702	52.395	2	1	Median	0.87215	0.87411	31.687	3	2	Median	NaN	NaN	NaN	0	0	Median	613500000	241660000	371830000	115700000	27594000	88107000	130100000	42932000	87163000	367700000	171140000	196560000	0	0	0	26397	571	25004	164937;164938;164939;164940;164941;164942	223350;223351;223352;223353;223354	223353			5	
ITPAHDQNDYEVGQR	0	Unmodified	1741.802	0.80197548	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.41	4	9	6				2	4		4	7	7	7	24.128	21.398	2;3	4.0068E-15	17703	160511_QHF_FH_JSI12i_2	155.57	150.14			0.98704	1.0007	17.919	24	1	Median	1.3504	1.1471	10.151	4	0	Median	0.78295	0.93623	28.613	6	1	Median	0.99023	0.98882	7.3198	7	0	Median	1.0037	1.0158	9.4073	7	0	Median	4987000000	2492000000	2495000000	832100000	376490000	455600000	870480000	435920000	434560000	1674900000	830080000	844870000	1609500000	849510000	759940000	26398	1283	25005	164943;164944;164945;164946;164947;164948;164949;164950;164951;164952;164953;164954;164955;164956;164957;164958;164959;164960;164961;164962;164963;164964;164965;164966;164967	223355;223356;223357;223358;223359;223360;223361;223362;223363;223364;223365;223366;223367;223368;223369;223370;223371;223372;223373;223374;223375;223376;223377;223378;223379;223380;223381;223382;223383;223384;223385;223386;223387;223388;223389;223390	223363			36	
ITPDMTLQNMK	1	Unmodified	1290.6312	0.63119367	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.751	54.346	2	5.5607E-05	49032	160511_QHF_FH_JSI10i_1	102.62	82.835			1.9751	2.1104	9.982	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7009	1.9666	NaN	1	1	Median	2.2936	2.2648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	433030000	146160000	286870000	0	0	0	201510000	75543000	125970000	231510000	70614000	160900000	0	0	0	26399	1685	25006	164968;164969;164970;164971	223391;223392;223393;223394	223393			4	
ITPDQQK	1	Unmodified	828.43413	0.43413207	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.4459	7.1087	2	0.013952	4675	160511_QHF_FH_JSI9i_1	66.993	34.523			0.85476	0.82276	10.27	4	0	Median	1.0063	0.79307	NaN	1	0	Median	0.8202	0.9469	NaN	1	0	Median	0.89078	0.85357	NaN	1	0	Median	0.70166	0.74582	NaN	1	0	Median	4523700000	2339500000	2184200000	1106600000	448830000	657800000	1242100000	732550000	509540000	1082400000	560310000	522070000	1092600000	597790000	494840000	26400	1927	25007	164972;164973;164974;164975	223395;223396;223397;223398;223399;223400;223401;223402	223402			8	
ITPEEAK	1	Unmodified	786.41233	0.41233399	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.64	5.6	4	3			1	2	1			2	5	3	1	12.376	9.2089	2	0.020108	7916	160511_QHF_FH_JSI9i_1	57.281	24.81			0.88203	0.94935	13.005	11	0	Median	1.1913	1.038	13.179	2	0	Median	0.80408	0.96497	8.4341	5	0	Median	0.96924	0.94935	12.177	3	0	Median	0.69144	0.72319	NaN	1	0	Median	20854000000	10157000000	10697000000	6228600000	2467100000	3761500000	5054500000	2620700000	2433800000	4980400000	2460600000	2519800000	4590600000	2608400000	1982300000	26401	2013	25008	164976;164977;164978;164979;164980;164981;164982;164983;164984;164985;164986	223403;223404;223405;223406;223407;223408;223409	223407			7	
ITPEEAKYK	2	Acetyl (K)	1119.5812	0.58119023	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		38.527	29.369	2	0.003615	17260	160513_QHF_FH_JSI11Kac_3	78.516	32.836			0.23578	0.23269	107.17	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2957	1.5489	NaN	1	0	Median	0.24497	0.24237	5.7658	2	0	Median	NaN	NaN	NaN	0	0	Median	298810000	213490000	85316000	0	0	0	28734000	14998000	13736000	270070000	198490000	71581000	0	0	0	26402	2013	25009	164987;164988;164989	223410;223411	223410	2042		2	
ITPENLPQILLQLK	1	Unmodified	1618.9658	0.96579333	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.96	1	5	5						2	2	3	4	4	100.92	99.396	2;3	1.4914E-11	88522	160511_QHF_FH_JSI12i_3	196.11	172.51			0.89216	0.941	14.089	13	13	Median	0.96438	0.78631	18.022	2	2	Median	0.71026	0.86335	8.1452	3	3	Plateau	1.0565	1.0144	13.426	4	4	Median	0.86896	0.94194	11.716	4	4	Median	6751800000	3673000000	3078800000	717820000	360210000	357610000	1167500000	702020000	465520000	1850500000	952940000	897560000	3015900000	1657800000	1358100000	26403	1556	25010	164990;164991;164992;164993;164994;164995;164996;164997;164998;164999;165000;165001;165002	223412;223413;223414;223415;223416;223417;223418;223419;223420;223421;223422;223423;223424	223423			13	
ITPENLPQILLQLKR	1	Acetyl (K)	1817.0775	0.077469045	1556	P43243	MATR3	Matrin-3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		96.936	87.53	3	0.0013731	49877	160513_QHF_FH_JSI11Kac_6	67.605	45.451			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33520000	33520000	0	0	0	0	0	0	0	33520000	33520000	0	0	0	0	26404	1556	25011	165003	223425	223425	1570		1	
ITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR	0	Unmodified	3566.7489	0.74888386	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				64.157	62.655	4	3.1733E-07	51493	160511_QHF_FH_JSI9i_3	49.968	43.556			1.0313	0.84397	NaN	1	0	Median	1.0313	0.84397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39925000	19210000	20715000	39925000	19210000	20715000	0	0	0	0	0	0	0	0	0	26405	1684	25012	165004	223426;223427	223427			2	
ITPFLPNWFINITSPVINVPLK	1	Unmodified	2522.4301	0.43010331	2874	Q5BJD5	TMEM41B	Transmembrane protein 41B	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.54	91.12	3	5.4485E-12	52322	160513_QHF_FH_JSI11Kac_6	103.95	90.491			1.0734	1.0284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0734	1.0284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47106000	23278000	23828000	0	0	0	0	0	0	47106000	23278000	23828000	0	0	0	26406	2874	25013	165005	223428;223429	223429			2	
ITPHTLNFVK	1	Unmodified	1168.6604	0.66044361	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	44.17	43.254	2;3	0.0028184	35600	160511_QHF_FH_JSI9i_3	57.59	40.204			1.705	1.5997	32.035	2	1	Median	1.5169	1.2754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9165	2.0064	NaN	1	1	Median	71422000	30969000	40453000	12191000	3930800	8260600	0	0	0	0	0	0	59231000	27038000	32193000	26407	5618	25014	165006;165007;165008	223430;223431;223432	223431			3	
ITPIQKPR	1	Acetyl (K)	993.59712	0.59711507	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			44.679	34.582	2	0.030833	19677	160513_QHF_FH_JSI10Kac_4	56.547	32.392			0.89179	1.0947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89179	1.0947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8423000	4414400	4008600	0	0	0	8423000	4414400	4008600	0	0	0	0	0	0	26408	1737	25015	165009	223433	223433			1	
ITPLEIEVLEETVQTMDTS	0	Unmodified	2147.0555	0.055532133	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	6	8	2							3	5	4	4	103.18	103.1	2;3	1.8318E-05	88987	160511_QHF_FH_JSI12i_2	72.634	63.815			1.0414	1.082	14.373	16	2	Median	1.284	1.0705	6.2648	3	0	Median	0.7986	0.96998	20.779	5	1	Median	1.0698	1.0763	6.3592	4	1	Linear	1.0329	1.069	5.4258	4	0	Median	2677400000	1314100000	1363300000	377380000	166800000	210580000	893250000	455850000	437400000	659950000	308190000	351760000	746870000	383270000	363610000	26409	4267	25016	165010;165011;165012;165013;165014;165015;165016;165017;165018;165019;165020;165021;165022;165023;165024;165025	223434;223435;223436;223437;223438;223439;223440;223441;223442;223443;223444;223445;223446;223447;223448;223449;223450;223451;223452	223437			19	
ITPLSLQTQGSSHETLNIVEEK	1	Unmodified	2423.2544	0.25438337	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	70.199	69.708	3	4.8018E-08	60363	160511_QHF_FH_JSI12i_3	88.036	73.422			0.93379	0.88704	20.618	4	1	Median	0.82074	0.70662	NaN	1	1	Median	0.65418	0.7911	NaN	1	0	Median	1.0624	0.99462	NaN	1	0	Median	1.1861	1.1084	NaN	1	0	Median	109610000	53720000	55885000	11773000	7003600	4769000	20518000	9216000	11302000	45347000	22369000	22979000	31967000	15132000	16836000	26410	339	25017	165026;165027;165028;165029	223453;223454;223455;223456;223457;223458;223459	223459			7	
ITPSHAMK	1	Unmodified	883.45857	0.45857268	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	1	3	3	2	8.8681	8.6404	2;3	0.00015898	6351	160511_QHF_FH_JSI9i_3	92.439	61.15			0.93487	0.90026	35.889	8	3	Median	1.1706	0.93962	NaN	1	0	Median	0.75357	0.85198	44.008	2	0	Median	1.3565	1.2746	56.217	3	2	Plateau	0.93106	0.9377	11.813	2	1	Median	4952400000	2634400000	2318000000	229550000	106450000	123100000	579500000	309760000	269740000	1552600000	739240000	813320000	2590800000	1478900000	1111900000	26411	906	25018	165030;165031;165032;165033;165034;165035;165036;165037;165038	223460;223461;223462;223463;223464;223465;223466;223467;223468;223469;223470;223471;223472	223466			13	
ITPSHAMK	1	Oxidation (M)	899.45349	0.4534873	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		5.4717	4.9733	2;3	0.011413	6366	160511_QHF_FH_JSI11i_3	38.086	26.039			1.0095	0.82779	6.1661	3	0	Median	1.0647	0.87237	7.4182	2	0	Median	0.70059	0.82475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208250000	99343000	108910000	163610000	73551000	90058000	44639000	25792000	18847000	0	0	0	0	0	0	26412	906	25018	165039;165040;165041;165042	223473;223474;223475	223473		487	3	
ITPSYVAFTPEGER	0	Unmodified	1565.7726	0.77257283	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.71	10	12	8				3	8		10	10	9	12	64.127	60.538	2;3	1.3519E-14	53675	160511_QHF_FH_JSI10i_2	158.05	135.41			1.0702	1.0637	12.365	39	12	Median	1.2488	1.0062	5.3255	9	3	Median	0.80804	0.94259	6.9394	10	4	Median	1.0877	1.0895	9.6726	9	2	Median	1.0576	1.1702	9.6183	11	3	Median	23534000000	11469000000	12065000000	3868500000	1783800000	2084700000	5551900000	3044900000	2507000000	7548000000	3467600000	4080400000	6565700000	3173000000	3392700000	26413	982	25019	165043;165044;165045;165046;165047;165048;165049;165050;165051;165052;165053;165054;165055;165056;165057;165058;165059;165060;165061;165062;165063;165064;165065;165066;165067;165068;165069;165070;165071;165072;165073;165074;165075;165076;165077;165078;165079;165080;165081;165082;165083	223476;223477;223478;223479;223480;223481;223482;223483;223484;223485;223486;223487;223488;223489;223490;223491;223492;223493;223494;223495;223496;223497;223498;223499;223500;223501;223502;223503;223504;223505;223506;223507;223508;223509;223510;223511;223512;223513;223514;223515;223516;223517;223518;223519;223520;223521;223522;223523;223524;223525;223526;223527;223528;223529;223530;223531;223532;223533;223534;223535;223536;223537	223530			61	
ITPSYVAFTPEGERLIGDAAK	1	Unmodified	2234.1583	0.15829814	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	3	1	79.698	79.196	3	9.199E-10	70595	160511_QHF_FH_JSI10i_2	109.03	93.771			2.0215	1.939	48.863	6	2	Median	1.0656	0.90933	NaN	1	0	Median	2.6387	3.1692	13.38	2	0	Median	2.0215	1.939	20.262	2	2	Median	1.43	1.4634	NaN	1	0	Median	1139800000	379530000	760310000	174140000	72777000	101370000	365090000	76737000	288350000	337060000	119360000	217710000	263540000	110660000	152890000	26414	982	25020	165084;165085;165086;165087;165088;165089;165090;165091	223538;223539;223540;223541;223542;223543;223544;223545;223546;223547	223545			10	
ITPVTVK	1	Unmodified	756.47454	0.47454032	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							2	1	1	2	24.26	23.722	2	0.037218	20702	160511_QHF_FH_JSI11i_1	48.756	11.662			1.0015	0.97586	13.159	6	0	Median	1.0964	0.90773	20.621	2	0	Median	0.79353	0.92188	NaN	1	0	Median	1.0707	1.033	NaN	1	0	Median	0.98814	1.0123	15.894	2	0	Median	917150000	464160000	453000000	303900000	136930000	166970000	197860000	125290000	72570000	213670000	108120000	105560000	201720000	93817000	107900000	26415	2586	25021	165092;165093;165094;165095;165096;165097	223548	223548			1	
ITPYLLHFSNDSVPR	0	Unmodified	1757.9101	0.91006937	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			73.139	71.69	3	0.0026984	60015	160511_QHF_FH_JSI10i_3	51.265	36.534			0.42546	0.49922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42546	0.49922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25731000	17646000	8084000	0	0	0	25731000	17646000	8084000	0	0	0	0	0	0	26416	4286	25022	165098	223549	223549			1	
ITQAVLGAHDGGVFGLCALR	0	Unmodified	2054.0731	0.073128724	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	80.189	79.609	3	3.0764E-07	69089	160511_QHF_FH_JSI12i_3	87.352	69.863			0.8119	0.94426	14.705	5	3	Median	1.3635	1.1266	NaN	1	1	Median	0.8119	0.94426	NaN	1	0	Median	0.93453	0.86596	19.782	2	2	Median	0.81153	0.90878	NaN	1	0	Median	394770000	180640000	214130000	31936000	11033000	20903000	75979000	47385000	28594000	213230000	86480000	126750000	73622000	35745000	37877000	26417	737	25023	165099;165100;165101;165102;165103;165104	223550;223551;223552;223553;223554;223555;223556	223555			7	
ITQDIFQQLLK	1	Unmodified	1345.7606	0.76055158	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	91.403	90.984	2	0.00028425	82718	160511_QHF_FH_JSI11i_1	77.192	52.054			0.95885	1.0395	16.419	7	1	Median	1.1605	0.98817	NaN	1	0	Median	0.86971	1.0494	1.3479	2	0	Median	0.91842	0.89986	10.914	2	0	Median	1.1538	1.2498	19.42	2	1	Median	993250000	479400000	513860000	170370000	72690000	97676000	303100000	161110000	141990000	322840000	148970000	173880000	196940000	96628000	100320000	26418	1872	25024	165105;165106;165107;165108;165109;165110;165111	223557;223558;223559;223560;223561;223562;223563;223564	223558			8	
ITQEDIEGILQK	1	Unmodified	1385.7402	0.74021007	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.366	75.82	2	0.003536	69048	160511_QHF_FH_JSI12i_1	65.5	44.63			0.9027	0.955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9027	0.955	NaN	1	1	Median	49097000	26608000	22488000	0	0	0	0	0	0	0	0	0	49097000	26608000	22488000	26419	3798	25025	165112	223565	223565			1	
ITQLLGLPTYR	0	Unmodified	1273.7394	0.73942221	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	73.222	72.524	2	0.0002247	64460	160511_QHF_FH_JSI10i_2	79.974	65.307			1.4789	1.4699	29.441	5	1	Median	1.1636	0.98828	NaN	1	0	Median	0.94428	1.1712	NaN	1	0	Median	1.8352	1.7618	25.617	2	1	Median	1.4789	1.6337	NaN	1	0	Median	185030000	85256000	99771000	29708000	11630000	18078000	48106000	27288000	20819000	76494000	31339000	45154000	30719000	15000000	15720000	26420	4424	25026	165113;165114;165115;165116;165117	223566;223567;223568;223569;223570;223571;223572	223572			7	
ITQLTPFNGYAGAK	1	Unmodified	1479.7722	0.7721789	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	1	1	3	59.209	58.44	2	2.1539E-10	50518	160511_QHF_FH_JSI11i_2	185.77	164.31			0.98855	1.0025	18.054	6	1	Median	0.98366	0.85787	NaN	1	0	Median	0.80227	0.96283	NaN	1	0	Median	0.99346	1.0055	NaN	1	0	Median	1.1192	1.2391	17.14	3	1	Median	591110000	286960000	304140000	98372000	55647000	42725000	91790000	43387000	48403000	175980000	79213000	96766000	224970000	108720000	116250000	26421	228	25027	165118;165119;165120;165121;165122;165123;165124	223573;223574;223575;223576;223577;223578;223579;223580;223581	223577			8	
ITQLVSDQANHVLAR	0	Unmodified	1663.9006	0.90056731	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	1	1	4	46.979	46.358	2;3	1.8733E-05	40873	160511_QHF_FH_JSI11i_3	103.39	89.974			0.5236	0.59668	131.84	5	5	Median	0.33273	0.29215	NaN	1	1	Median	0.5236	0.59668	NaN	1	1	Median	4.8499	4.435	NaN	1	1	Median	0.95219	0.95876	172.42	2	2	Median	304580000	155870000	148710000	31271000	17775000	13497000	34678000	24126000	10552000	70321000	19951000	50370000	168310000	94020000	74293000	26422	3276	25028	165125;165126;165127;165128;165129;165130;165131	223582;223583;223584;223585;223586;223587;223588	223582			7	
ITQNNAMK	1	Unmodified	918.4593	0.45930096	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	8.2715	7.9079	2	0.00060564	5766	160511_QHF_FH_JSI12i_1	102.71	62.61			0.97486	1.1015	22.01	7	1	Median	1.3546	1.1294	3.5297	2	0	Median	0.79532	0.95438	26.494	2	1	Median	1.0135	0.99309	26.42	2	0	Median	0.6653	0.70536	NaN	1	0	Median	3628100000	1816600000	1811500000	747650000	312240000	435410000	943620000	536980000	406640000	1199200000	520450000	678730000	737690000	446970000	290720000	26423	920	25029	165132;165133;165134;165135;165136;165137;165138	223589;223590;223591;223592;223593;223594;223595;223596;223597	223591			9	
ITQNNAMK	1	Oxidation (M)	934.45422	0.45421558	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	5.0551	4.7402	2	0.018569	2763	160511_QHF_FH_JSI10i_1	53.351	25.827			0.91361	0.89027	5.4092	4	0	Median	1.0727	0.88028	NaN	1	0	Median	0.76317	0.90037	NaN	1	0	Median	0.89342	0.87752	NaN	1	0	Median	0.93426	0.98481	NaN	1	0	Median	515270000	275030000	240240000	107360000	51814000	55542000	143300000	87175000	56128000	120700000	65520000	55184000	143900000	70518000	73385000	26424	920	25029	165139;165140;165141;165142	223598;223599;223600;223601	223600		501	4	
ITQQGTDPLVLAVQSK	1	Unmodified	1696.9359	0.93594977	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	65.679	65.067	2;3	1.4335E-05	58832	160511_QHF_FH_JSI10i_1	118.37	96.281			1.0004	0.98155	14.21	8	0	Median	1.0553	0.84556	12.76	2	0	Median	0.9914	1.1479	6.0247	2	0	Median	1.0172	0.97618	3.3791	2	0	Median	1.0002	1.0597	13.441	2	0	Median	309180000	150620000	158560000	65267000	32530000	32737000	78775000	41273000	37502000	85356000	38230000	47126000	79787000	38588000	41199000	26425	3537	25030	165143;165144;165145;165146;165147;165148;165149;165150	223602;223603;223604;223605;223606;223607	223606			5	
ITQQMPK	1	Unmodified	844.44767	0.44767364	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			13.536	13.298	2	0.013281	10871	160511_QHF_FH_JSI10i_1	70.912	37.174			0.90464	1.0972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90464	1.0972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	287240000	179150000	108090000	0	0	0	287240000	179150000	108090000	0	0	0	0	0	0	26426	2147	25031	165151	223608	223608			1	
ITQSEFDRQAEITR	0	Unmodified	1692.8431	0.84311201	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.84	35.695	3	0.051731	30365	160511_QHF_FH_JSI12i_3	24.558	11.422			1.1919	1.2343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1919	1.2343	NaN	1	1	Median	22691000	6615900	16075000	0	0	0	0	0	0	0	0	0	22691000	6615900	16075000	26427	5559	25032	165152	223609	223609			1	
ITQSNAILR	0	Unmodified	1014.5822	0.58219329	1188	P21266;P28161	GSTM3;GSTM2	Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.86	4	3	3				2	1	1	3	4	5	2	28.536	25.441	2	2.2076E-05	21782	160511_QHF_FH_JSI11i_3	106.04	41.265			0.99735	0.98776	15.759	14	0	Median	1.2952	1.1098	11.174	3	0	Median	0.74834	0.87699	7.9911	4	0	Median	1.0184	1.0052	16.638	5	0	Median	0.99941	1.0104	33.625	2	0	Median	3809200000	1895700000	1913500000	569490000	252240000	317240000	909340000	506630000	402710000	1556100000	773590000	782520000	774260000	363210000	411050000	26428	1188	25033	165153;165154;165155;165156;165157;165158;165159;165160;165161;165162;165163;165164;165165;165166	223610;223611;223612;223613;223614;223615;223616;223617;223618	223610			9	
ITREEGVLTLWR	0	Unmodified	1471.8147	0.81471242	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			64.488	62.983	3	0.0033953	52748	160511_QHF_FH_JSI10i_3	37.793	26.179			0.49326	0.54415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49326	0.54415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29451000	17080000	12371000	0	0	0	29451000	17080000	12371000	0	0	0	0	0	0	26429	2198	25034	165167	223619	223619			1	
ITSAPDMEDILTESEIK	1	Unmodified	1890.9132	0.91322499	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	86.576	86.125	2;3	2.9756E-22	78196	160511_QHF_FH_JSI10i_1	212.95	198.79			1.0962	1.0658	10.771	8	0	Median	1.1099	0.91446	3.8739	2	0	Median	0.88148	1.0393	14.173	2	0	Median	1.1042	1.0658	1.9367	2	0	Median	1.1152	1.1629	0.30167	2	0	Median	1112400000	579040000	533390000	262400000	127840000	134560000	293470000	160350000	133120000	321920000	161350000	160570000	234640000	129490000	105140000	26430	4292	25035	165168;165169;165170;165171;165172;165173;165174;165175	223620;223621;223622;223623;223624;223625;223626;223627;223628;223629;223630;223631;223632;223633;223634;223635;223636;223637	223630			18	
ITSAVWGPLGECIIAGHESGELNQYSAK	1	Unmodified	2986.4495	0.44947114	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	89.963	89.834	3;4	9.7648E-11	77827	160511_QHF_FH_JSI12i_3	81.341	75.18			1.0874	1.0626	17.058	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77466	0.95975	NaN	1	0	Median	1.0365	0.96711	28.928	2	0	Median	1.13	1.1207	7.5303	2	0	Median	299510000	151680000	147830000	0	0	0	28269000	15786000	12484000	139290000	72248000	67038000	131960000	63649000	68310000	26431	2391	25036	165176;165177;165178;165179;165180	223638;223639;223640;223641;223642;223643;223644;223645;223646;223647	223646			10	
ITSAYLQDIENAYK	1	Unmodified	1627.8094	0.80935227	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	79.27	78.426	2	2.1784E-05	68911	160511_QHF_FH_JSI11i_2	83.137	68.165			0.87918	0.96523	22.554	3	3	Median	1.5102	1.2595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80896	0.80433	NaN	1	1	Median	0.87918	0.96523	NaN	1	1	Median	77030000	38480000	38550000	25261000	8282600	16979000	0	0	0	32112000	19017000	13095000	19656000	11180000	8476000	26432	675	25037	165181;165182;165183;165184;165185;165186	223648;223649;223650;223651;223652;223653	223652			6	
ITSAYLQDIENAYKK	2	Unmodified	1755.9043	0.90431529	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	3	2	72.035	71.384	3	2.2393E-05	61993	160511_QHF_FH_JSI12i_3	107.98	96.502			0.51489	0.48308	40.089	8	6	Median	0.56291	0.47716	NaN	1	1	Median	0.38929	0.47812	3.2041	2	2	Median	0.47096	0.43626	43.01	3	3	Plateau	0.91209	0.95398	40.672	2	0	Median	894990000	584350000	310640000	40879000	27943000	12937000	306120000	223040000	83082000	303170000	201880000	101290000	244820000	131490000	113320000	26433	675	25038	165187;165188;165189;165190;165191;165192;165193;165194	223654;223655;223656;223657;223658;223659;223660;223661;223662;223663;223664	223664			11	
ITSCIFQLLQEAGIK	1	Unmodified	1719.9229	0.92294224	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.72		4	5						8	4	6	4	3	99.224	95.451	2;3	9.5019E-98	91048	160511_QHF_FH_JSI11i_3	256.96	227.49			1.0864	1.083	35.51	17	7	Median	1.2226	1.0073	19.095	4	1	Median	0.85829	1.0451	45.011	6	4	Median	1.0102	0.9879	32.556	4	1	Median	1.1227	1.1657	51.389	3	1	Median	8563600000	3932800000	4630900000	813390000	407380000	406000000	2163200000	1059200000	1103900000	2040800000	872730000	1168100000	3546300000	1593400000	1952900000	26434	1206	25039	165195;165196;165197;165198;165199;165200;165201;165202;165203;165204;165205;165206;165207;165208;165209;165210;165211	223665;223666;223667;223668;223669;223670;223671;223672;223673;223674;223675;223676;223677;223678;223679;223680;223681	223666			15	
ITSDEPLTK	1	Unmodified	1002.5233	0.523341	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	23.796	20.874	2	0.00056389	17913	160511_QHF_FH_JSI10i_1	78.334	44.538			0.89943	0.91576	28.84	6	1	Median	1.1701	0.95654	NaN	1	0	Median	0.74888	0.88565	NaN	1	0	Median	0.98197	0.95991	13.184	2	0	Median	0.62737	0.66952	49.02	2	1	Median	2110400000	1015200000	1095100000	446020000	221990000	224030000	498760000	269120000	229640000	529670000	247740000	281930000	635900000	276380000	359520000	26435	5227	25040	165212;165213;165214;165215;165216;165217	223682;223683;223684;223685;223686;223687;223688;223689;223690;223691;223692	223687			11	
ITSEAEDLVANFFPK	1	Unmodified	1679.8407	0.8406524	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	4	2	101.2	101.1	2;3	5.2448E-30	89622	160511_QHF_FH_JSI10i_2	223.71	200.11			0.99344	1.0331	15.247	11	2	Median	1.1624	0.98673	1.2928	2	1	Median	0.89211	1.0759	9.5572	3	0	Plateau	1.0208	1.0308	24.309	4	1	Median	0.98577	1.0932	8.0064	2	0	Median	2197400000	1170000000	1027400000	370470000	191250000	179220000	515110000	303860000	211250000	787630000	402490000	385130000	524180000	272410000	251770000	26436	1950	25041	165218;165219;165220;165221;165222;165223;165224;165225;165226;165227;165228	223693;223694;223695;223696;223697;223698;223699;223700;223701;223702;223703;223704	223704			12	
ITSEALLVTQQLVK	1	Unmodified	1541.9029	0.90285872	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.28	7	8	4					7	2	5	9	8	6	82.04	78.769	2;3	3.4965E-07	71403	160511_QHF_FH_JSI11i_2	109.15	96.009			0.9077	0.899	21.393	26	10	Median	0.93503	0.79763	11.203	5	1	Median	0.7514	0.89327	16.29	9	3	Median	0.96978	0.97242	31.253	8	4	Median	0.81167	0.86423	16.666	4	2	Median	2169000000	1128300000	1040700000	322870000	174690000	148180000	565180000	304800000	260380000	823660000	399770000	423900000	457320000	249040000	208270000	26437	3343	25042	165229;165230;165231;165232;165233;165234;165235;165236;165237;165238;165239;165240;165241;165242;165243;165244;165245;165246;165247;165248;165249;165250;165251;165252;165253;165254;165255;165256	223705;223706;223707;223708;223709;223710;223711;223712;223713;223714;223715;223716;223717;223718;223719;223720;223721;223722;223723;223724;223725;223726;223727;223728;223729;223730;223731;223732;223733;223734;223735;223736;223737;223738;223739;223740;223741;223742;223743;223744;223745	223729			41	
ITSEIPQTER	0	Unmodified	1172.6037	0.60371659	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.865	25.297	2	0.00036493	22146	160511_QHF_FH_JSI11i_1	76.827	47.74			0.85562	1.038	10.737	4	0	Linear	1.3188	1.0848	NaN	1	0	Median	0.99987	1.2065	NaN	1	0	Median	1.0248	0.99327	NaN	1	0	Median	0.89177	0.94471	NaN	1	0	Median	2661800000	1241400000	1420300000	581540000	219890000	361650000	667550000	358320000	309230000	656900000	312100000	344810000	755770000	351110000	404660000	26438	2117	25043	165257;165258;165259;165260	223746;223747;223748;223749;223750;223751;223752	223746			7	
ITSENPDEGFKPSSGTVQELNFR	1	Unmodified	2551.2191	0.2190605	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	62.356	61.836	3	1.307E-11	54991	160511_QHF_FH_JSI11i_3	110.9	96.886			1.0342	1.0476	17.722	5	0	Median	1.2392	1.0476	NaN	1	0	Median	1.0342	1.2741	NaN	1	0	Median	1.1908	1.1532	28.505	2	0	Median	0.95938	0.96647	NaN	1	0	Median	469920000	204390000	265520000	64960000	24792000	40168000	94247000	44379000	49868000	228920000	102710000	126210000	81786000	32511000	49275000	26439	2348	25044	165261;165262;165263;165264;165265	223753;223754;223755;223756;223757;223758;223759;223760;223761;223762;223763;223764	223755			12	
ITSFVIPEPSPTSQTIQEGSR	0	Unmodified	2273.1539	0.15394104	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	74.568	74.021	2;3	8.5098E-05	67492	160511_QHF_FH_JSI12i_1	75.462	63.67			1.2073	1.1956	42.992	3	3	Median	1.9445	1.5891	NaN	1	1	Median	0.58613	0.68265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2073	1.1956	NaN	1	1	Median	80814000	39473000	41341000	14988000	4088000	10900000	50926000	30151000	20776000	0	0	0	14900000	5234400	9665800	26440	1512	25045	165266;165267;165268;165269;165270;165271	223765;223766;223767;223768;223769;223770	223766			6	
ITSGNPQGFFSIHPK	1	Unmodified	1628.8311	0.83109076	2539	Q14517	FAT1	Protocadherin Fat 1;Protocadherin Fat 1, nuclear form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.314	56.482	3	0.00014891	46371	160511_QHF_FH_JSI9i_3	69.261	50.897			1.3003	1.1663	23.926	4	2	Linear	1.1113	0.91254	NaN	1	0	Median	0.58263	0.65292	NaN	1	1	Median	0.89464	0.85266	NaN	1	1	Median	1.1267	1.1684	NaN	1	0	Median	120770000	68744000	52030000	28884000	17591000	11293000	21397000	15446000	5950600	30734000	17256000	13477000	39759000	18450000	21309000	26441	2539	25046	165272;165273;165274;165275	223771;223772;223773;223774;223775	223773			5	
ITSGPFEPDLYK	1	Unmodified	1365.6816	0.68163256	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.728	5	1	1							3	1	1	2	62.305	61.497	2	9.3621E-06	55701	160511_QHF_FH_JSI10i_1	119.22	92.109			1.0594	1.0511	4.0452	7	2	Median	1.2581	1.0511	1.717	3	0	Median	0.94189	1.1189	NaN	1	0	Median	1.0594	1.0348	NaN	1	0	Median	0.96232	1.03	6.3754	2	2	Median	9818900000	4797900000	5021000000	2883900000	1273200000	1610700000	1755100000	904650000	850410000	2131100000	1056100000	1075000000	3048800000	1564000000	1484800000	26442	5475	25047	165276;165277;165278;165279;165280;165281;165282	223776;223777;223778;223779;223780;223781;223782;223783;223784;223785;223786;223787;223788;223789;223790;223791;223792;223793;223794;223795	223786			20	
ITSPLMEPSSIEK	1	Unmodified	1430.7327	0.73268185	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	59.71	58.926	2	7.6261E-05	53633	160511_QHF_FH_JSI11i_1	113.63	98			0.87641	0.90419	10.14	8	0	Median	1.1076	0.93291	15.394	2	0	Median	0.72792	0.86831	9.2316	2	0	Median	0.84195	0.83494	7.7633	2	0	Median	0.90471	0.98773	1.3214	2	0	Median	1137400000	610440000	527000000	277620000	124860000	152770000	247580000	147870000	99710000	351620000	193700000	157920000	260620000	144010000	116610000	26443	1300	25048	165283;165284;165285;165286;165287;165288;165289;165290	223796;223797;223798;223799;223800;223801;223802;223803;223804;223805;223806;223807;223808;223809;223810;223811;223812;223813;223814	223797			19	
ITSPVLMGEENNVVHNQK	1	Unmodified	2008.0048	0.004774387	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	51.535	51.108	3	0.0013841	44856	160511_QHF_FH_JSI9i_2	51.495	43.208			0.76638	0.80205	62.937	3	3	Plateau	0.31368	0.266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38427	0.36883	NaN	1	1	Median	0.8622	0.89751	NaN	1	1	Median	145140000	97213000	47930000	52282000	41454000	10828000	0	0	0	54486000	38899000	15587000	38376000	16860000	21516000	26444	5164	25049	165291;165292;165293	223815;223816;223817	223816			3	
ITSQIFIGPTYYQR	0	Unmodified	1685.8777	0.8777066	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6	5.79		1	2						1	1	3			76.3	67.697	2	6.128E-07	36320	160513_QHF_FH_JSI9Kac_6	110.31	74.346			1.2193	1.0238	NaN	1	0	Median	1.2193	1.0238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16866000	8797400	8068400	16866000	8797400	8068400	0	0	0	0	0	0	0	0	0	26445	1366	25050	165294;165295;165296;165297	223818;223819;223820;223821	223821			4	
ITTGAQDDLRK	1	Unmodified	1216.6412	0.64116473	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.643	1	5	5							1	2	4	4	15.93	15.593	2;3	7.1084E-05	12799	160511_QHF_FH_JSI11i_3	89.266	78.679			1.4003	1.4628	48.24	10	6	Median	1.3579	1.1765	NaN	1	0	Median	1.0155	1.2649	20.791	2	1	Median	1.7293	2.402	27.611	4	2	Linear	1.4439	1.4622	60.327	3	3	Plateau	817750000	375480000	442280000	97587000	37902000	59685000	127690000	67439000	60250000	322260000	117250000	205010000	270210000	152880000	117330000	26446	5640	25051	165298;165299;165300;165301;165302;165303;165304;165305;165306;165307;165308	223822;223823;223824;223825;223826;223827;223828;223829;223830;223831;223832;223833;223834	223823			13	
ITTGSSSAGTQSSTSNR	0	Unmodified	1640.7602	0.76017024	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	8.5597	8.2103	2	7.6433E-98	5912	160511_QHF_FH_JSI11i_1	259.7	243.03			1.0982	0.96834	6.5052	4	0	Linear	1.2438	1.0402	NaN	1	0	Median	0.85418	0.98952	NaN	1	0	Median	1.1643	1.1525	NaN	1	0	Median	1.0359	1.0893	NaN	1	0	Median	627480000	316250000	311230000	146980000	72121000	74855000	199900000	106310000	93586000	135370000	63974000	71392000	145240000	73841000	71401000	26447	227	25052	165309;165310;165311;165312;165313	223835;223836;223837;223838;223839;223840;223841;223842	223835			8	
ITTHFELK	1	Unmodified	987.53893	0.53893149	5333	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				36.961	35.504	3	0.019764	28950	160511_QHF_FH_JSI9i_3	38.086	22.424			1.2913	1.0588	NaN	1	1	Median	1.2913	1.0588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31431000	15482000	15949000	31431000	15482000	15949000	0	0	0	0	0	0	0	0	0	26448	5333	25053	165314	223843	223843			1	
ITTHYTIYPR	0	Unmodified	1263.6612	0.66117189	2724	Q16134	ETFDH	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	35.728	35.119	3	0.00066482	28681	160511_QHF_FH_JSI9i_3	58.699	50.289			1.088	1.1504	17.106	5	2	Median	1.521	1.245	NaN	1	0	Median	1.0038	1.1504	NaN	1	1	Median	1.3474	1.2678	29.578	2	1	Median	1.0018	1.0392	NaN	1	0	Median	186750000	100050000	86700000	39948000	19863000	20085000	47334000	26549000	20785000	58728000	31585000	27143000	40740000	22052000	18688000	26449	2724	25054	165315;165316;165317;165318;165319	223844;223845;223846;223847;223848	223846			4	
ITTMQLER	0	Unmodified	990.51682	0.51681584	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	32.271	31.583	2	0.013171	26841	160511_QHF_FH_JSI11i_2	51.787	19.674			1.1099	0.93324	28.851	3	0	Median	1.1099	0.93324	NaN	1	0	Median	0.56023	0.69688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2412	1.2409	NaN	1	0	Median	509310000	252360000	256950000	218310000	86601000	131710000	212980000	128930000	84050000	0	0	0	78026000	36829000	41196000	26450	2502	25055	165320;165321;165322;165323	223849;223850;223851	223850			3	
ITTSLLPINNGSK	1	Unmodified	1356.7613	0.76127986	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.55	60.045	2	0.00034263	52129	160511_QHF_FH_JSI11i_2	97.456	68.729			0.791	0.84238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.791	0.84238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38802000	19485000	19316000	0	0	0	0	0	0	38802000	19485000	19316000	0	0	0	26451	2448	25056	165324	223852	223852			1	
ITTTFGEHLNAVQASAEHQK	1	Unmodified	2181.0814	0.081444804	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	45.874	45.046	3;4	1.5102E-08	37734	160511_QHF_FH_JSI10i_3	101.49	86.565			1.0071	0.90722	11.36	6	1	Median	1.1331	0.91068	NaN	1	0	Median	0.76126	0.86735	5.8156	2	0	Median	1.017	0.9704	13.487	2	0	Median	1.0989	1.1085	NaN	1	1	Median	669480000	339640000	329840000	57954000	28544000	29410000	194600000	100000000	94603000	330690000	175430000	155260000	86230000	35661000	50570000	26452	4425	25057	165325;165326;165327;165328;165329;165330	223853;223854;223855;223856	223855			2	
ITTVAHTEVGPGPESSPVVVR	0	Unmodified	2131.1273	0.12733236	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	50.068	49.373	3	2.5188E-13	43720	160511_QHF_FH_JSI11i_3	121.21	110.83			1.1312	1.2419	20.234	6	0	Median	1.4295	1.2443	NaN	1	0	Median	1.0507	1.2852	NaN	1	0	Median	1.1639	1.1435	15.657	2	0	Median	0.9318	0.97782	33.54	2	0	Median	245640000	115430000	130200000	24363000	11973000	12390000	38473000	17500000	20973000	93266000	44139000	49126000	89535000	41820000	47716000	26453	2390	25058	165331;165332;165333;165334;165335;165336	223857;223858;223859;223860;223861;223862;223863;223864;223865;223866;223867;223868	223858			12	
ITTVIQHVFQNLILGSK	1	Unmodified	1910.0989	0.098932769	4702	Q9H3R5	CENPH	Centromere protein H	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	93.771	85.736	3	0.00025533	47842	160513_QHF_FH_JSI9Kac_6	101.54	82.709			0.20282	0.20235	13.671	2	2	Median	0.26263	0.22288	NaN	1	1	Median	0.15663	0.1837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	388700000	357380000	31319000	97581000	74366000	23215000	240240000	232140000	8103400	0	0	0	50874000	50874000	0	26454	4702	25059	165337;165338;165339	223869;223870;223871	223869			3	
ITVFLSTWNK	1	Unmodified	1207.6601	0.66010926	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7.33	6.13			2						1	1	1		1	77.929	75.448	2	2.8071E-06	40044	160513_QHF_FH_JSI10Kac_6	120.12	71.836			0.98817	0.89183	26.592	3	1	Median	0.98817	0.82523	NaN	1	0	Median	0.74305	0.89183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3503	1.3531	NaN	1	1	Median	137170000	62380000	74790000	13916000	5545500	8370300	93604000	41385000	52220000	0	0	0	29650000	15450000	14200000	26455	3009	25060	165340;165341;165342	223872;223873;223874	223874			3	
ITVHFINR	0	Unmodified	998.56615	0.56614929	961	P10109	FDX1	Adrenodoxin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	49.429	40.161	2;3	0.00081709	22086	160513_QHF_FH_JSI10Kac_6	71.501	62.588			0.91192	0.99527	15.932	6	0	Median	1.2766	1.1004	NaN	1	0	Median	0.83729	0.99359	6.122	2	0	Median	0.90816	0.91342	NaN	1	0	Median	1.0965	1.1597	27.512	2	0	Median	329860000	164110000	165750000	69066000	32234000	36832000	183440000	94500000	88940000	36351000	18401000	17950000	41003000	18980000	22023000	26456	961	25061	165343;165344;165345;165346;165347;165348;165349	223875;223876;223877;223878;223879;223880;223881;223882;223883;223884	223883			10	
ITVLQLSALLK	1	Unmodified	1197.7697	0.76965971	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	2	1	2	99.82	98.612	2	6.5741E-06	90688	160511_QHF_FH_JSI11i_3	113.93	83.356			0.89549	0.91114	16.299	5	5	Median	0.98638	0.80439	NaN	1	1	Median	0.81468	0.93969	4.363	2	2	Median	0.89549	0.84672	NaN	1	1	Median	1.1999	1.2228	NaN	1	1	Median	1862900000	965560000	897320000	353090000	181630000	171460000	828640000	470640000	357990000	265070000	138930000	126140000	416080000	174360000	241720000	26457	2947	25062	165350;165351;165352;165353;165354;165355	223885;223886;223887;223888;223889;223890	223885			6	
ITVNEVELLVMK	1	Unmodified	1386.7792	0.77923811	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	6.42	1	4							2	1	2	2	2	98.082	95.324	2	9.5451E-16	86594	160511_QHF_FH_JSI12i_2	156.71	129.82			0.90774	0.98012	12.438	7	0	Median	0.90774	0.77704	NaN	1	0	Median	0.74612	0.85046	16.713	2	0	Median	1.0102	0.99044	1.4813	2	0	Median	0.91362	0.99692	0.79161	2	0	Median	1651300000	865810000	785470000	177080000	96881000	80195000	269320000	157690000	111630000	681820000	321140000	360670000	523070000	290100000	232970000	26458	5441	25063	165356;165357;165358;165359;165360;165361;165362	223891;223892;223893;223894;223895;223896;223897;223898	223891			8	
ITVPFLEQCPIR	0	Unmodified	1471.7857	0.78572048	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.156	88.429	2	0.015094	77892	160511_QHF_FH_JSI11i_2	51.949	24.177			0.91421	0.94382	9.7694	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86423	0.88082	NaN	1	1	Median	0.96707	1.0113	NaN	1	1	Median	44657000	22325000	22332000	0	0	0	0	0	0	27776000	13037000	14739000	16880000	9287400	7592700	26459	1615	25064	165363;165364	223899;223900	223900			2	
ITVPGNFQGHSGAQCITCSYK	1	Unmodified	2324.0678	0.067785349	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	2	1	55.032	54.322	3	5.8893E-15	48200	160511_QHF_FH_JSI11i_3	131.09	116.31			1.0425	1.0765	66.425	6	4	Median	1.1201	0.9079	NaN	1	0	Median	0.92852	1.0765	11.31	2	1	Median	1.0178	0.96293	65.917	2	2	Median	4.1878	4.2138	NaN	1	1	Median	521270000	281100000	240160000	65162000	31484000	33678000	160130000	99746000	60382000	259980000	140820000	119150000	35997000	9050100	26947000	26460	2277	25065	165365;165366;165367;165368;165369;165370	223901;223902;223903;223904;223905;223906;223907;223908;223909	223901			9	
ITVPLVSEVQIAQLR	0	Unmodified	1664.9825	0.98250603	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	99.59	99.445	2;3	1.3918E-05	88000	160511_QHF_FH_JSI10i_2	86.756	72.585			0.87463	0.93135	10.257	8	0	Median	1.2214	1.0654	6.1194	2	0	Median	0.75095	0.93122	2.0765	2	0	Median	0.95631	0.96488	7.9638	2	0	Median	0.76543	0.85115	10.678	2	0	Median	147080000	73183000	73898000	30801000	11212000	19589000	33674000	18179000	15494000	51365000	27109000	24256000	31240000	16682000	14558000	26461	6	25066	165371;165372;165373;165374;165375;165376;165377;165378	223910;223911;223912;223913;223914;223915;223916;223917;223918;223919	223918			10	
ITVTFNINNSIPPTFDGEEEPSQGQK	1	Unmodified	2861.3719	0.37193232	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			92.507	92.473	3	7.2076E-06	83737	160511_QHF_FH_JSI10i_1	67.217	60.712			1.1043	1.3116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1043	1.3116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45181000	24403000	20777000	0	0	0	45181000	24403000	20777000	0	0	0	0	0	0	26462	2251	25067	165379;165380	223920;223921	223921			1	
ITVTSEVPFSK	1	Unmodified	1206.6496	0.64960415	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.26	2	4	4				3	6		4	6	4	5	63.588	58.083	2	1.2342E-09	51160	160511_QHF_FH_JSI9i_2	135.43	95.361			0.88684	0.9071	24.871	19	5	Median	1.1792	0.95958	41.816	4	1	Median	0.91496	1.0584	17.014	6	3	Median	0.88155	0.85657	24.979	4	0	Median	0.7709	0.83472	10.888	5	1	Median	11277000000	5410300000	5866300000	1716300000	676320000	1040000000	3121200000	1543100000	1578100000	2728800000	1333200000	1395700000	3710100000	1857700000	1852400000	26463	1431	25068	165381;165382;165383;165384;165385;165386;165387;165388;165389;165390;165391;165392;165393;165394;165395;165396;165397;165398;165399	223922;223923;223924;223925;223926;223927;223928;223929;223930;223931;223932;223933;223934;223935;223936;223937;223938;223939;223940;223941;223942;223943;223944;223945;223946;223947;223948	223939			27	
ITVTSEVPFSKR	1	Unmodified	1362.7507	0.75071518	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			49.706	48.12	3	0.005369	39459	160511_QHF_FH_JSI9i_3	48.704	40.6			0.43657	0.42386	75.976	2	2	Median	0.88543	0.72533	NaN	1	1	Median	0.21525	0.24769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187880000	117970000	69906000	116100000	59713000	56383000	71783000	58260000	13523000	0	0	0	0	0	0	26464	1431	25069	165400;165401	223949;223950	223950			2	
ITVTSEVPFSKR	1	Acetyl (K)	1404.7613	0.76127986	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							3	3			2	4		72.497	61.749	2;3	8.6354E-09	33040	160513_QHF_FH_JSI11Kac_5	118.77	103.38			0.29938	0.29669	75.951	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0589	1.2501	0.040667	2	0	Median	0.29231	0.28707	4.6837	4	1	Median	NaN	NaN	NaN	0	0	Median	203850000	158650000	45193000	0	0	0	17085000	9303500	7782000	186760000	149350000	37411000	0	0	0	26465	1431	25069	165402;165403;165404;165405;165406;165407	223951;223952;223953;223954;223955;223956	223955	1391		5	
ITVVDALHEIPVK	1	Unmodified	1432.829	0.8289655	2729	Q16270	IGFBP7	Insulin-like growth factor-binding protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.119	83.286	3	0.00046075	71965	160511_QHF_FH_JSI12i_2	59.185	46.824			1.0695	1.1042	3.8222	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1521	1.1345	NaN	1	0	Median	0.99283	1.0748	NaN	1	0	Median	20559000	10625000	9933500	0	0	0	0	0	0	12482000	6655500	5826400	8077000	3970000	4107100	26466	2729	25070	165408;165409	223957;223958;223959;223960	223957			4	
ITVVGVGAVGMACAISILMK	1	Unmodified	1989.0825	0.082496122	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15.3	2.31			1	4					41		20	22	4	104.91	96.984	2;3	6.2275E-57	51637	160513_QHF_FH_JSI11Kac_6	238.17	213.91			0.81068	0.8253	42.17	31	12	Median	NaN	NaN	NaN	0	0	Median	0.68109	0.8253	47.684	11	4	Median	0.89016	0.84945	42.417	17	5	Median	0.67047	0.72066	12.62	3	3	Median	1393700000	780330000	613370000	0	0	0	312470000	191530000	120930000	853550000	445710000	407840000	227690000	143090000	84599000	26467	761	25071	165410;165411;165412;165413;165414;165415;165416;165417;165418;165419;165420;165421;165422;165423;165424;165425;165426;165427;165428;165429;165430;165431;165432;165433;165434;165435;165436;165437;165438;165439;165440;165441;165442;165443;165444;165445;165446;165447;165448;165449;165450;165451;165452;165453;165454;165455	223961;223962;223963;223964;223965;223966;223967;223968;223969;223970;223971;223972;223973;223974;223975;223976;223977;223978;223979;223980;223981;223982;223983;223984;223985;223986;223987;223988;223989;223990;223991;223992;223993;223994;223995;223996;223997;223998;223999;224000;224001;224002;224003;224004;224005;224006	223962			44	
ITVVGVGAVGMACAISILMK	1	Oxidation (M)	2005.0774	0.077410745	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	2.16				2	2				2			3	3	97.312	88.215	3	1.2028E-05	47966	160513_QHF_FH_JSI12Kac_6	77.871	63.399			0.75687	0.76037	23.488	6	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64575	0.61606	12.332	3	0	Median	0.77729	0.8169	10.341	3	1	Plateau	196460000	114530000	81936000	0	0	0	0	0	0	121850000	74810000	47041000	74614000	39719000	34895000	26468	761	25071	165456;165457;165458;165459;165460;165461	224007;224008;224009;224010;224011	224010		265	3	
ITVVGVGQVGMACAISILGK	1	Unmodified	1972.0849	0.084938963	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	5.93		2	50	4	3	4	1	1	24	6	12	39	32	102.02	98.44	2;3	1.2218E-121	49118	160513_QHF_FH_JSI11Kac_6	290.89	267.67			0.88039	0.88452	32.36	63	18	Median	1.2909	1.0955	7.6166	4	1	Median	0.70361	0.83144	38.544	9	3	Median	0.88646	0.84384	28.701	28	10	Median	0.85677	0.89852	33.507	22	4	Median	5831800000	3153200000	2678600000	535360000	237490000	297870000	1120400000	662450000	457960000	2740700000	1461100000	1279700000	1435300000	792180000	643140000	26469	864	25072	165462;165463;165464;165465;165466;165467;165468;165469;165470;165471;165472;165473;165474;165475;165476;165477;165478;165479;165480;165481;165482;165483;165484;165485;165486;165487;165488;165489;165490;165491;165492;165493;165494;165495;165496;165497;165498;165499;165500;165501;165502;165503;165504;165505;165506;165507;165508;165509;165510;165511;165512;165513;165514;165515;165516;165517;165518;165519;165520;165521;165522;165523;165524;165525;165526;165527;165528;165529;165530;165531;165532;165533;165534;165535;165536;165537;165538;165539;165540;165541;165542;165543;165544;165545;165546;165547;165548;165549;165550	224012;224013;224014;224015;224016;224017;224018;224019;224020;224021;224022;224023;224024;224025;224026;224027;224028;224029;224030;224031;224032;224033;224034;224035;224036;224037;224038;224039;224040;224041;224042;224043;224044;224045;224046;224047;224048;224049;224050;224051;224052;224053;224054;224055;224056;224057;224058;224059;224060;224061;224062;224063;224064;224065;224066;224067;224068;224069;224070;224071;224072;224073;224074;224075;224076;224077;224078;224079;224080;224081;224082;224083;224084;224085;224086;224087;224088;224089;224090;224091;224092;224093;224094;224095;224096;224097;224098;224099;224100;224101;224102;224103;224104;224105;224106;224107;224108;224109;224110;224111;224112;224113;224114;224115;224116;224117;224118;224119;224120;224121;224122;224123	224042			108	
ITVVGVGQVGMACAISILGK	1	Oxidation (M)	1988.0799	0.079853586	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2		2	2	1	92.527	87.759	2;3	3.2145E-34	43870	160513_QHF_FH_JSI11Kac_6	170.11	129.54			0.61679	0.65033	17.874	4	1	Median	NaN	NaN	NaN	0	0	Median	0.55298	0.64502	NaN	1	0	Median	0.60676	0.5756	18.423	2	1	Median	0.79352	0.78043	NaN	1	0	Median	179620000	105120000	74493000	0	0	0	10053000	6159700	3893100	126110000	76452000	49662000	43450000	22512000	20939000	26470	864	25072	165551;165552;165553;165554;165555	224124;224125;224126;224127;224128;224129	224125		405	6	
ITVYEALNHPWLK	1	Unmodified	1582.8508	0.85076357	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.576	82.368	3	0.00051572	71501	160511_QHF_FH_JSI12i_3	67.952	57.467			1.2686	1.2854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2686	1.2854	NaN	1	1	Median	131660000	64101000	67561000	0	0	0	0	0	0	0	0	0	131660000	64101000	67561000	26471	221	25073	165556;165557	224130;224131	224131			2	
ITWSIIR	0	Unmodified	887.52289	0.52288749	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	72.573	63.81	2	0.052062	34990	160513_QHF_FH_JSI10Kac_6	61.561	34.697			0.77062	0.81579	8.4767	4	1	Median	1.0798	0.91755	NaN	1	0	Median	0.69937	0.80467	NaN	1	1	Median	0.77917	0.74771	NaN	1	0	Median	0.76217	0.82707	NaN	1	0	Median	452180000	253240000	198940000	94659000	41788000	52871000	184600000	107910000	76698000	113660000	67782000	45875000	59259000	35762000	23497000	26472	1479	25074	165558;165559;165560;165561	224132;224133	224133			2	
ITWSNPPAQGAR	0	Unmodified	1296.6575	0.65748349	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.67	6.62	2	4	2						4	2	3	4	3	39.391	35.927	2	4.0309E-31	31597	160511_QHF_FH_JSI11i_3	183.47	171.63			0.92616	1.0065	12.227	12	1	Median	1.4284	1.2045	4.9159	2	0	Median	0.83265	1.0307	12.766	3	0	Plateau	1.0057	1.0126	11.07	4	0	Median	0.89033	0.93277	6.5614	3	1	Plateau	1296500000	628120000	668360000	221730000	101700000	120040000	275080000	143260000	131820000	475030000	222160000	252870000	324640000	161010000	163630000	26473	1111	25075	165562;165563;165564;165565;165566;165567;165568;165569;165570;165571;165572;165573	224134;224135;224136;224137;224138;224139;224140;224141;224142;224143	224135			10	
ITYYQNTLTVMINNGFTPDK	1	Unmodified	2332.1409	0.14093352	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				87.871	79.234	3	0.00040198	43938	160513_QHF_FH_JSI9Kac_6	96.234	82.642			1.3892	1.1882	NaN	1	1	Median	1.3892	1.1882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44446000	20954000	23493000	44446000	20954000	23493000	0	0	0	0	0	0	0	0	0	26474	1648	25076	165574	224144	224144			1	
IVAAHNK	1	Unmodified	751.43407	0.43407249	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		0.82476	0.82476	2	0.013952	384	160511_QHF_FH_JSI11i_3	66.994	49.227			1.1394	1.0621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1394	1.0621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67225000	34703000	32522000	0	0	0	0	0	0	67225000	34703000	32522000	0	0	0	26475	5586	25077	165575	224145;224146	224146			2	
IVAAKYEVIHSK	2	Acetyl (K)	1398.7871	0.78710068	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	53.556	44.177	3	0.00025306	23996	160513_QHF_FH_JSI11Kac_6	79.639	57.726			1.5764	1.5326	34.278	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68671	0.81634	NaN	1	0	Median	1.5764	1.5326	NaN	1	0	Median	1.2784	1.414	NaN	1	0	Median	47578000	22053000	25525000	0	0	0	10305000	5963100	4341600	23289000	9727100	13562000	13984000	6362600	7621600	26476	3849	25078	165576;165577;165578	224147;224148;224149;224150;224151	224147	2959		5	
IVADFSASVK	1	Unmodified	1035.5601	0.56006086	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.348	45.696	2	0.013644	41303	160511_QHF_FH_JSI12i_1	52.549	33.455			1.1958	1.2392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1958	1.2392	NaN	1	0	Median	193570000	108460000	85110000	0	0	0	0	0	0	0	0	0	193570000	108460000	85110000	26477	1693	25079	165579	224152	224152			1	
IVADKDYSVTANSK	2	Acetyl (K)	1551.7781	0.77805214	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		47.946	38.621	2	6.8034E-24	21461	160513_QHF_FH_JSI11Kac_3	156.69	142.01			0.60828	0.65717	63.157	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86433	1.0271	NaN	1	0	Median	0.42809	0.42047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27146000	17482000	9664300	0	0	0	8486800	4386800	4100100	18660000	13095000	5564300	0	0	0	26478	864	25080	165580;165581	224153;224154;224155;224156	224154	560		4	
IVAEEFLK	1	Unmodified	947.53278	0.53278348	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	55.375	54.723	2	0.0030848	49286	160511_QHF_FH_JSI10i_1	75.213	39.027			1.0065	1.0212	12.369	6	0	Median	1.0581	0.9037	NaN	1	0	Median	0.92058	1.0935	6.2848	2	0	Median	1.0708	1.0671	9.5991	2	0	Median	0.8135	0.84365	NaN	1	0	Median	1288500000	615360000	673120000	255200000	111720000	143480000	401250000	229870000	171390000	573230000	243170000	330060000	58799000	30604000	28195000	26479	1905	25081	165582;165583;165584;165585;165586;165587	224157;224158;224159;224160;224161	224158			5	
IVAERPGTNSTGPAPMAPPR	0	Unmodified	2018.0367	0.036743217	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.7	1	3	3							2	3	2		37.646	36.822	3	4.1061E-11	30673	160511_QHF_FH_JSI10i_3	104.89	94.795			0.87157	0.85442	13.53	7	0	Median	1.1631	0.93984	0.1243	2	0	Median	0.80833	0.97149	20.738	3	0	Plateau	0.82677	0.81337	5.2101	2	0	Median	NaN	NaN	NaN	0	0	Median	2308800000	1190200000	1118500000	1352300000	644430000	707900000	772380000	448900000	323480000	184050000	96879000	87167000	0	0	0	26480	2380	25082	165588;165589;165590;165591;165592;165593;165594	224162;224163;224164;224165;224166;224167;224168;224169;224170;224171;224172	224165			11	
IVAERPGTNSTGPAPMAPPR	0	Oxidation (M)	2034.0317	0.031657839	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			29.967	28.599	3	0.00013163	23209	160511_QHF_FH_JSI9i_3	59.9	39.852			0.98658	0.96207	6.1493	2	0	Median	1.2369	1.0048	NaN	1	0	Median	0.78695	0.92113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154860000	75050000	79813000	111350000	52335000	59018000	43510000	22715000	20795000	0	0	0	0	0	0	26481	2380	25082	165595;165596	224173;224174	224173		1933	2	
IVAETMNNYLFGER	0	Unmodified	1655.7977	0.79774172	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.903	72.023	2	8.514E-15	62158	160511_QHF_FH_JSI12i_2	162.26	135.59			0.91448	0.94154	2.7528	4	0	Median	1.1193	0.94295	NaN	1	0	Median	0.75878	0.94013	NaN	1	0	Median	0.93144	0.93747	NaN	1	0	Median	0.89783	0.99319	NaN	1	0	Median	325180000	157760000	167420000	64725000	28230000	36495000	69928000	40442000	29486000	88783000	43539000	45244000	101740000	45552000	56191000	26482	4547	25083	165597;165598;165599;165600	224175;224176;224177;224178;224179;224180;224181;224182	224176			8	
IVAFADAAVEPIDFPIAPVYAASMVLK	1	Unmodified	2817.5027	0.50267591	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.77		6	1						2	3	1	3	2	102.53	100.4	3;4	1.1047E-25	90943	160511_QHF_FH_JSI11i_2	128.01	121.51			0.95745	0.9662	25.678	9	2	Median	1.134	0.9662	20.175	3	1	Median	0.96163	1.1886	NaN	1	0	Median	0.87439	0.82658	26.709	3	1	Median	1.002	1.1048	27.915	2	0	Median	848540000	429360000	419180000	233360000	107400000	125970000	94470000	46818000	47652000	371060000	201570000	169490000	149650000	73584000	76067000	26483	1249	25084	165601;165602;165603;165604;165605;165606;165607;165608;165609	224183;224184;224185;224186;224187;224188;224189;224190;224191;224192;224193	224188			11	
IVAIGTSDLDK	1	Unmodified	1130.6183	0.61830402	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.317	46.637	2	0.00012778	42560	160511_QHF_FH_JSI12i_1	96.143	59.586			1.0243	1.1099	13.478	4	4	Median	1.3127	1.0876	NaN	1	1	Median	0.95102	1.1327	NaN	1	1	Median	0.89447	0.86653	NaN	1	1	Median	1.1033	1.1648	NaN	1	1	Median	977140000	575840000	401300000	215720000	107520000	108200000	262750000	185270000	77482000	283700000	164880000	118820000	214960000	118170000	96795000	26484	1623	25085	165610;165611;165612;165613	224194;224195;224196;224197	224195			4	
IVAISCAADILK	1	Unmodified	1272.7112	0.71115855	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.888	75.645	2	0.061001	65384	160511_QHF_FH_JSI12i_2	42.001	30.85			0.99534	1.0865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99534	1.0865	NaN	1	1	Median	22619000	10878000	11741000	0	0	0	0	0	0	0	0	0	22619000	10878000	11741000	26485	2997	25086	165614	224198	224198			1	
IVAISEDYPRK	1	Unmodified	1289.698	0.69795133	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.83		3	5					1	2	3	1	4	3	36.827	33.678	2;3	0.00082702	28487	160511_QHF_FH_JSI12i_3	67.08	60.42			1.0507	0.87626	44.526	10	4	Median	1.0623	0.8809	18.353	3	0	Median	0.57535	0.69901	NaN	1	0	Median	0.93321	0.90867	59.2	4	2	Median	0.89861	0.91049	76.329	2	2	Median	1098000000	538990000	559040000	79614000	40043000	39571000	160000000	86788000	73214000	380770000	176960000	203810000	477640000	235200000	242440000	26486	2493	25087	165615;165616;165617;165618;165619;165620;165621;165622;165623;165624;165625	224199;224200;224201;224202;224203;224204;224205;224206;224207;224208	224206			10	
IVALNAHTFLR	0	Unmodified	1253.7244	0.72444085	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	64.534	57.971	3	6.7238E-05	31781	160513_QHF_FH_JSI10Kac_6	88.187	69.562			1.0274	1.0492	24.972	6	0	Median	1.2141	1.0075	27.829	2	0	Median	0.76187	0.87199	27.695	2	0	Median	1.5393	1.4167	NaN	1	0	Median	1.018	1.0378	NaN	1	0	Median	296560000	137660000	158900000	97982000	44741000	53241000	118810000	61725000	57090000	60200000	23422000	36778000	19563000	7770800	11792000	26487	1203	25088	165626;165627;165628;165629;165630;165631	224209;224210;224211;224212;224213;224214;224215	224215			7	
IVALSSSLSNAK	1	Unmodified	1188.6714	0.67140222	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	6.23	5	5	1				1	3	1	6	3	4	3	46.944	43.382	2	4.2594E-06	23971	160513_QHF_FH_JSI11Kac_5	121.83	99.25			0.93053	0.85644	46.978	15	8	Median	0.95895	0.77685	44.552	5	4	Median	0.83674	0.96811	49.954	3	1	Median	0.92049	0.91191	43.255	4	1	Median	1.0076	1.0426	63.132	3	2	Median	1360600000	702500000	658060000	252890000	128740000	124150000	317410000	189110000	128290000	353190000	186150000	167040000	437080000	198500000	238570000	26488	552	25089	165632;165633;165634;165635;165636;165637;165638;165639;165640;165641;165642;165643;165644;165645;165646;165647	224216;224217;224218;224219;224220;224221;224222;224223;224224;224225;224226;224227;224228;224229;224230;224231;224232;224233;224234;224235;224236;224237;224238	224234			23	
IVANPEDTR	0	Unmodified	1013.5142	0.5141733	2111	P82914	MRPS15	28S ribosomal protein S15, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	16.067	15.723	2	0.00017508	13284	160511_QHF_FH_JSI10i_1	100.02	80.54			1.0867	1.1995	8.8042	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1018	1.2765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0719	1.1271	NaN	1	0	Median	364150000	167830000	196320000	0	0	0	206710000	97225000	109480000	0	0	0	157450000	70607000	86840000	26489	2111	25090	165648;165649	224239;224240;224241	224241			3	
IVAPELYIAVGISGAIQHLAGMK	1	Unmodified	2350.3083	0.30827362	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	4	3	3	3	102.45	99.586	3	2.4612E-60	49883	160513_QHF_FH_JSI12Kac_6	191.65	162.51			0.91206	0.98311	16.157	12	3	Plateau	0.84952	0.74347	19.482	4	3	Median	0.74084	0.88608	15.556	2	0	Median	0.9279	0.95896	8.4305	3	0	Plateau	0.9974	1.0399	16.729	3	0	Plateau	4068300000	2106800000	1961500000	1199000000	590750000	608200000	1128600000	608070000	520520000	944450000	493070000	451370000	796270000	414870000	381410000	26490	1041	25091	165650;165651;165652;165653;165654;165655;165656;165657;165658;165659;165660;165661;165662	224242;224243;224244;224245;224246;224247;224248;224249;224250;224251;224252;224253;224254;224255;224256;224257;224258;224259;224260	224258			19	
IVAPELYIAVGISGAIQHLAGMK	1	Oxidation (M)	2366.3032	0.30318824	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.544	90.117	3	1.2134E-30	51144	160513_QHF_FH_JSI11Kac_6	160.77	144.28			0.87129	0.83734	13.807	4	0	Median	0.90791	0.77143	NaN	1	0	Median	0.68676	0.79092	NaN	1	0	Median	1.1136	1.0443	NaN	1	0	Median	0.83614	0.88649	NaN	1	0	Median	1110500000	586670000	523810000	410360000	217600000	192760000	182250000	121350000	60909000	201380000	79724000	121660000	316470000	167990000	148480000	26491	1041	25091	165663;165664;165665;165666	224261;224262;224263;224264;224265;224266;224267;224268	224261		665	8	
IVAPGKGILAADESTGSIAK	2	Unmodified	1897.052	0.052042156	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			56.562	55.01	3	6.3825E-05	45086	160511_QHF_FH_JSI9i_3	77.391	61.867			0.44818	0.43345	63.692	2	2	Median	0.84175	0.68003	NaN	1	1	Median	0.23863	0.27628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78229000	49969000	28261000	25278000	12063000	13216000	52951000	37906000	15045000	0	0	0	0	0	0	26492	803	25092	165667;165668;165669	224269;224270;224271	224271			3	
IVAPISDSPKPPPQR	1	Unmodified	1600.8937	0.89369102	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.34		2	4					1		2	2	2	1	37.648	36.795	3	1.1162E-05	32197	160511_QHF_FH_JSI11i_3	122.97	115.24			0.98438	1.0044	11.138	6	0	Median	1.3148	1.0992	12.309	2	0	Median	0.87963	1.0427	5.7357	2	0	Median	1.0126	0.92944	NaN	1	0	Median	0.86839	0.87579	NaN	1	0	Median	1129900000	571900000	557980000	242780000	109830000	132950000	342270000	190380000	151890000	348660000	175790000	172860000	196170000	95891000	100280000	26493	677	25093	165670;165671;165672;165673;165674;165675;165676	224272;224273;224274;224275;224276;224277;224278;224279;224280;224281;224282;224283;224284;224285;224286;224287;224288;224289;224290;224291	224273			20	
IVAPPGGR	0	Unmodified	765.44972	0.44972255	2739	Q16555;Q14195;Q14194	DPYSL2;DPYSL3;CRMP1	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	14.908	14.55	2	0.021822	11578	160511_QHF_FH_JSI12i_2	44.531	13.228			1.0063	1.0335	14.915	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0063	1.0335	NaN	1	0	Median	1.0976	1.1781	18.18	2	0	Median	401120000	192110000	209010000	0	0	0	0	0	0	159250000	74893000	84352000	241870000	117210000	124660000	26494	2739	25094	165677;165678;165679	224292;224293;224294;224295	224292			4	
IVAQVWPFLGQYMEK	1	Unmodified	1807.9331	0.93311299	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							1	5	3	3	101.55	101.48	2;3	6.2394E-35	84054	160511_QHF_FH_JSI10i_3	165.58	132.17			1.0659	1.1313	22.378	11	2	Median	1.3345	1.1313	NaN	1	1	Median	0.86644	1.0563	27.732	4	1	Median	1.0659	1.0051	14.98	3	0	Median	1.2889	1.3152	32.681	3	0	Median	2118800000	1029600000	1089100000	117030000	42600000	74429000	462180000	259180000	203000000	641840000	330300000	311540000	897740000	397560000	500180000	26495	4399	25095	165680;165681;165682;165683;165684;165685;165686;165687;165688;165689;165690;165691	224296;224297;224298;224299;224300;224301;224302;224303;224304;224305;224306;224307;224308;224309;224310;224311;224312	224304			17	
IVAQVWPFLGQYMEK	1	Oxidation (M)	1823.928	0.92802762	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1.67	0.943	2		1									1	2	63.127	62.583	2	0.013677	56767	160511_QHF_FH_JSI11i_1	48.44	13.553			0.97956	0.98286	7.0194	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0618	1.0329	NaN	1	0	Median	0.90367	0.93527	NaN	1	0	Median	147690000	75622000	72072000	0	0	0	0	0	0	74666000	38096000	36570000	73028000	37526000	35502000	26496	4399	25095	165692;165693;165694	224313;224314	224313		2465	2	
IVASMWDSLGEEQK	1	Unmodified	1591.7552	0.75520821	613	O94842;O15405;Q96NM4	TOX4;TOX3;TOX2	TOX high mobility group box family member 4;TOX high mobility group box family member 3;TOX high mobility group box family member 2	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	68.247	67.227	2	0.00010529	58690	160511_QHF_FH_JSI11i_2	73.632	61.016			0.87167	1.1046	24.461	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1246	1.1046	NaN	1	1	Median	0.87167	0.96233	32.71	2	2	Median	51246000	24197000	27049000	5147100	0	5147100	0	0	0	12970000	6594200	6375300	33129000	17603000	15526000	26497	613	25096	165695;165696;165697;165698;165699	224315;224316;224317;224318;224319	224319			5	
IVASTLSNPELFEEWTGNVK	1	Unmodified	2233.1267	0.12666366	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								2	4	5	3	98.58	98.453	2;3	2.3609E-54	87172	160511_QHF_FH_JSI10i_2	267.17	259.97			0.92498	1.0097	7.9765	11	0	Median	1.1861	1.0199	1.7817	2	0	Median	0.8956	1.0496	8.1042	4	0	Median	0.92311	0.93199	11.328	3	0	Median	0.9787	1.0374	3.821	2	0	Median	729740000	346970000	382770000	174060000	82446000	91611000	285350000	141950000	143400000	197230000	81488000	115740000	73108000	41087000	32021000	26498	1111	25097	165700;165701;165702;165703;165704;165705;165706;165707;165708;165709;165710;165711;165712;165713	224320;224321;224322;224323;224324;224325;224326;224327;224328;224329;224330;224331;224332;224333;224334;224335;224336;224337;224338;224339;224340;224341;224342;224343;224344	224343			23	
IVATLPYIK	1	Unmodified	1016.627	0.62701821	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	66.193	65.089	2	0.023898	55948	160511_QHF_FH_JSI12i_2	49.418	31.382			0.18726	0.18306	16.698	2	2	Median	0.24204	0.206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14488	0.16267	NaN	1	1	Median	245290000	203010000	42282000	84570000	68181000	16389000	0	0	0	0	0	0	160720000	134830000	25893000	26499	1366	25098	165714;165715	224345;224346	224345			2	
IVAVTGAEAQK	1	Unmodified	1085.6081	0.60807369	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.83	4	3				2				2	2	2	3	23.152	19.747	2	2.3313E-05	18362	160511_QHF_FH_JSI12i_2	105.52	77.347			0.97339	1.0615	27.156	9	2	Median	1.2662	1.0324	14.634	2	0	Median	0.94581	1.1359	2.8612	2	0	Median	1.0998	1.0785	2.2433	2	0	Median	0.55752	0.59654	32.601	3	2	Median	5180600000	2621600000	2559000000	1428900000	734140000	694800000	1064300000	541020000	523240000	1223100000	614620000	608490000	1464300000	731870000	732470000	26500	1664	25099	165716;165717;165718;165719;165720;165721;165722;165723;165724	224347;224348;224349;224350;224351;224352;224353;224354;224355;224356;224357;224358;224359;224360	224349			14	
IVAYSSMILFTSLNHER	0	Unmodified	1980.0139	0.01388251	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.19			1	1					7	2	3	3	1	84.971	77.64	2;3	4.8308E-83	42987	160513_QHF_FH_JSI10Kac_6	270.27	233.42			0.88827	0.90312	29.814	9	1	Median	1.0627	0.91439	22.508	2	0	Median	0.77232	0.91807	46.219	3	1	Median	1.0033	0.95389	22.29	3	0	Plateau	0.85651	0.90312	NaN	1	0	Median	4910500000	2400700000	2509800000	1307400000	486370000	821060000	2336900000	1258700000	1078200000	815590000	382410000	433180000	450520000	273220000	177310000	26501	5227	25100	165725;165726;165727;165728;165729;165730;165731;165732;165733	224361;224362;224363;224364;224365;224366;224367;224368;224369;224370;224371	224370			11	
IVAYSSMILFTSLNHER	0	Oxidation (M)	1996.0088	0.0087971324	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.301	69.941	3	6.8019E-33	36668	160513_QHF_FH_JSI12Kac_6	162.79	145.3			0.98286	0.99462	12.165	4	1	Median	1.1445	0.97407	NaN	1	0	Median	1.0087	1.2144	NaN	1	1	Median	0.94639	0.91473	NaN	1	0	Median	0.95768	1.0156	NaN	1	0	Median	1453900000	675380000	778510000	668860000	285220000	383650000	296240000	155590000	140650000	103140000	40916000	62226000	385640000	193650000	191990000	26502	5227	25100	165734;165735;165736;165737	224372;224373;224374;224375	224374		2608	4	
IVDAVIQEHQPSVLLELGAYCGYSAVR	0	Unmodified	2986.5222	0.52224215	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	98.357	98.209	3	7.6414E-18	84955	160511_QHF_FH_JSI12i_3	106.88	101.21			1.3249	1.5616	31.142	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1432	1.4097	NaN	1	1	Median	1.0535	1.049	NaN	1	0	Median	1.7855	1.9439	16.498	2	0	Median	76209000	34968000	41240000	0	0	0	9490700	3491500	5999300	33554000	15323000	18231000	33164000	16154000	17010000	26503	1199	25101	165738;165739;165740;165741	224376;224377;224378;224379;224380;224381;224382	224381			7	
IVDDLKDEAEQYRK	2	Unmodified	1720.8632	0.86317875	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	4	2	36.36	36.057	3;4	0.00047779	30630	160511_QHF_FH_JSI12i_3	75.589	67.806			0.88254	0.90819	35.018	7	4	Median	NaN	NaN	NaN	0	0	Median	0.83612	1.0091	NaN	1	0	Median	0.91098	0.86968	39.622	4	2	Median	0.83279	0.83171	48.903	2	2	Median	1154500000	543920000	610620000	0	0	0	144810000	68843000	75967000	617970000	313120000	304850000	391750000	161960000	229800000	26504	542	25102	165742;165743;165744;165745;165746;165747;165748	224383;224384;224385;224386;224387;224388;224389;224390;224391	224391			9	
IVDDWANDGWGLK	1	Unmodified	1487.7045	0.70449327	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.61	3.09	6	7	4					1		4	6	4	4	74.423	73.755	2;3	8.3963E-41	65468	160511_QHF_FH_JSI10i_2	201.48	178.13			0.97419	1.0206	14.361	16	2	Median	0.9915	0.81888	17.266	4	0	Median	0.83185	0.94917	8.3095	5	0	Median	1.0454	1.0236	13.604	4	1	Median	1.0151	1.1172	5.4276	3	1	Median	9487400000	4529800000	4957600000	1788000000	731860000	1056100000	2312700000	1201300000	1111400000	2927800000	1327700000	1600100000	2458900000	1268900000	1190000000	26505	1299	25103	165749;165750;165751;165752;165753;165754;165755;165756;165757;165758;165759;165760;165761;165762;165763;165764;165765;165766	224392;224393;224394;224395;224396;224397;224398;224399;224400;224401;224402;224403;224404;224405;224406;224407;224408;224409;224410;224411;224412;224413;224414;224415;224416;224417;224418;224419;224420;224421;224422;224423;224424;224425;224426;224427;224428;224429;224430;224431;224432	224428			40	
IVDDWANDGWGLKK	2	Unmodified	1615.7995	0.79945628	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	63.624	62.321	3	0.017209	53527	160511_QHF_FH_JSI12i_2	39.685	28.74			0.54766	0.62928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54766	0.62928	NaN	1	1	Median	54085000	37331000	16754000	0	0	0	0	0	0	0	0	0	54085000	37331000	16754000	26506	1299	25104	165767	224433	224433			1	
IVDGPDPENIILILK	1	Unmodified	1647.9447	0.94472354	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	101.51	101.41	2	0.00078877	92177	160511_QHF_FH_JSI10i_1	84.479	63.702			0.70204	0.7942	10.387	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63955	0.73795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77063	0.85472	NaN	1	0	Median	54742000	31908000	22834000	0	0	0	27112000	15159000	11953000	0	0	0	27630000	16749000	10881000	26507	486	25105	165768;165769	224434;224435	224435			1	
IVDIIDTTGSGDVNTATEVEPK	1	Unmodified	2273.1275	0.12745152	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	70.005	69.455	2;3	3.2105E-46	61672	160511_QHF_FH_JSI9i_1	206.1	183.9			0.87454	0.818	33.134	8	3	Median	1.2493	1.0241	43.675	2	0	Median	0.6973	0.80119	35.264	2	1	Median	0.80779	0.79591	46.212	2	1	Median	0.67942	0.71233	31.456	2	1	Median	549510000	322440000	227070000	81898000	37345000	44553000	171690000	94219000	77471000	141360000	88860000	52499000	154570000	102020000	52552000	26508	1316	25106	165770;165771;165772;165773;165774;165775;165776;165777;165778	224436;224437;224438;224439;224440;224441;224442;224443;224444;224445;224446;224447;224448;224449;224450	224449			15	
IVDKPGDHDPETLEAIAENAK	2	Unmodified	2261.1176	0.11755554	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	55.599	55.518	3;4	1.1688E-06	49139	160511_QHF_FH_JSI11i_3	92.932	78.916			1.2549	1.1867	49.98	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94117	0.88608	41.319	2	2	Median	1.7402	1.7886	NaN	1	1	Median	172210000	79504000	92708000	0	0	0	0	0	0	106900000	50082000	56819000	65310000	29421000	35889000	26509	4204	25107	165779;165780;165781	224451;224452;224453;224454;224455	224451			5	
IVDLGEEPEKPAPSLVGTAP	1	Unmodified	2018.0572	0.057187113	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	71.705	71.415	3	0.0027874	65192	160511_QHF_FH_JSI12i_1	44.816	39.914			0.81389	0.87701	54.899	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0891	1.293	NaN	1	1	Median	0.60822	0.59486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112810000	73679000	39131000	0	0	0	55480000	36278000	19202000	57330000	37401000	19929000	0	0	0	26510	682	25108	165782;165783;165784;165785	224456;224457;224458;224459	224458			4	
IVDLHSR	0	Unmodified	838.4661	0.4661009	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		11.061	11.061	2	0.039872	8671	160511_QHF_FH_JSI11i_3	47.443	17.602			0.81913	0.77099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81913	0.77099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	161840000	82995000	78850000	0	0	0	0	0	0	161840000	82995000	78850000	0	0	0	26511	2545	25109	165786	224460	224460			1	
IVDNGYGYVSNGSVYFDTAK	1	Unmodified	2168.0062	0.006214175	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	68.997	68.611	2	2.2541E-33	62573	160511_QHF_FH_JSI12i_1	156.11	133.88			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8475000	0	8475000	0	0	0	0	0	0	8475000	0	8475000	0	0	0	26512	1665	25110	165787;165788	224461;224462	224462			2	
IVDNLGASGNSLYQR	0	Unmodified	1605.8111	0.8110836	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	47.402	46.681	2	1.3663E-16	42475	160511_QHF_FH_JSI12i_1	122.39	86.851			2.1866	2.2575	84.276	5	4	Median	5.7022	4.9876	NaN	1	1	Median	5.3546	6.8929	NaN	1	1	Median	1.638	1.612	47.626	2	1	Median	1.0045	1.0679	NaN	1	1	Median	183060000	71117000	111940000	18723000	3651500	15072000	12762000	4545200	8216500	101870000	38446000	63426000	49705000	24475000	25230000	26513	3117	25111	165789;165790;165791;165792;165793;165794	224463;224464;224465;224466;224467;224468	224465			6	
IVDNLQSR	0	Unmodified	943.50869	0.50869399	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	16.121	15.845	2	0.020585	13392	160511_QHF_FH_JSI10i_1	45.68	19.741			0.3969	0.3858	17.037	3	1	Median	NaN	NaN	NaN	0	0	Median	0.31572	0.37508	NaN	1	0	Median	0.3969	0.3858	NaN	1	1	Median	0.49134	0.51046	NaN	1	0	Median	433460000	298920000	134540000	0	0	0	178060000	130870000	47188000	144970000	100600000	44370000	110430000	67450000	42982000	26514	4821	25112	165795;165796;165797	224469;224470	224470			2	
IVDNVRPDR	0	Unmodified	1082.5833	0.58325592	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			12.55	11.89	2;3	0.011135	9394	160511_QHF_FH_JSI10i_3	68.224	24.454			1.1701	1.3706	37.214	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1701	1.3706	37.214	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	363240000	212190000	151050000	0	0	0	363240000	212190000	151050000	0	0	0	0	0	0	26515	3216	25113	165798;165799	224471;224472	224471			2	
IVDPEIALK	1	Unmodified	996.58555	0.58554733	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	54.484	53.564	2	0.010906	48747	160511_QHF_FH_JSI12i_1	49.418	31.382			1.2169	1.1428	5.5649	2	0	Median	1.3152	1.0987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.126	1.1886	NaN	1	0	Median	290810000	125610000	165200000	147710000	68729000	78985000	0	0	0	0	0	0	143100000	56886000	86211000	26516	1401	25114	165800;165801	224473;224474	224473			2	
IVDQIRPDR	0	Unmodified	1110.6146	0.61455605	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.22	2	6	8					4	4	6	7	7	4	20.033	16.83	2;3	3.3728E-06	13901	160511_QHF_FH_JSI10i_3	138.54	70.564			1.0324	1.0167	20.508	24	0	Median	1.4666	1.212	27.041	6	0	Median	0.86926	1.0126	12.931	7	0	Median	1.0456	1.0209	10.79	7	0	Median	0.84924	0.88626	13.002	4	0	Median	7510200000	3699700000	3810500000	1403900000	540720000	863190000	2445700000	1264800000	1180900000	2754100000	1403500000	1350600000	906470000	490740000	415730000	26517	1128;3893	25115	165802;165803;165804;165805;165806;165807;165808;165809;165810;165811;165812;165813;165814;165815;165816;165817;165818;165819;165820;165821;165822;165823;165824;165825	224475;224476;224477;224478;224479;224480;224481;224482;224483;224484;224485;224486;224487;224488;224489;224490;224491;224492;224493;224494;224495;224496;224497;224498;224499;224500;224501;224502;224503;224504;224505;224506	224481			32	
IVDRIDNDGDGFVTTEELK	1	Unmodified	2135.0382	0.038242585	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	2.65	4	15	8						1	3	7	10	8	61.269	60.204	2;3	1.7425E-24	53429	160511_QHF_FH_JSI11i_3	170.38	153.5			1.049	1.0332	28.022	24	6	Median	1.0614	0.89524	7.3552	3	0	Median	0.85581	1.033	33.359	5	0	Median	1.1274	1.0948	31.173	10	5	Median	0.99161	1.0624	19.408	6	1	Median	11328000000	5399000000	5929000000	928160000	451760000	476400000	2084700000	1178900000	905770000	4276100000	1925400000	2350700000	4039000000	1842900000	2196100000	26518	2652	25116	165826;165827;165828;165829;165830;165831;165832;165833;165834;165835;165836;165837;165838;165839;165840;165841;165842;165843;165844;165845;165846;165847;165848;165849;165850;165851;165852;165853	224507;224508;224509;224510;224511;224512;224513;224514;224515;224516;224517;224518;224519;224520;224521;224522;224523;224524;224525;224526;224527;224528;224529;224530;224531;224532;224533;224534;224535;224536;224537;224538;224539;224540;224541;224542;224543;224544;224545;224546;224547;224548;224549;224550;224551;224552;224553;224554;224555;224556;224557;224558;224559;224560;224561;224562;224563;224564;224565;224566;224567;224568;224569;224570;224571;224572;224573;224574;224575;224576	224509			70	
IVDVIGEK	1	Unmodified	871.50148	0.50148335	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.087	33.698	2	0.042075	29998	160511_QHF_FH_JSI11i_1	39.022	12.42			0.75856	0.7515	37.238	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67613	0.78184	NaN	1	0	Median	0.75856	0.74307	NaN	1	0	Median	1.4147	1.4506	NaN	1	1	Median	433780000	276320000	157460000	0	0	0	163730000	115260000	48473000	172740000	112090000	60649000	97306000	48968000	48337000	26519	1043	25117	165854;165855;165856	224577;224578;224579	224577			3	
IVDVMDSSQQK	1	Unmodified	1248.602	0.60200203	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.162	29.594	2	0.010093	26658	160511_QHF_FH_JSI12i_1	57.532	42.381			1.2769	1.3306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2769	1.3306	NaN	1	1	Median	75317000	37401000	37916000	0	0	0	0	0	0	0	0	0	75317000	37401000	37916000	26520	560	25118	165857	224580	224580			1	
IVDVYENLYAGRK	1	Unmodified	1538.8093	0.80929269	1643	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.686	51.451	3	5.1864E-05	44063	160511_QHF_FH_JSI12i_3	70.438	59.494			0.98717	1.0167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98717	1.0167	NaN	1	0	Median	75028000	35886000	39143000	0	0	0	0	0	0	0	0	0	75028000	35886000	39143000	26521	1643	25119	165858	224581	224581			1	
IVDYLLEK	1	Unmodified	991.559	0.55899823	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.527	74.236	2	0.0068205	64459	160511_QHF_FH_JSI12i_3	59.205	29.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26522	4876	25120	165859	224582	224582			1	
IVEAAENEYQTAISENYQTMSDTTFK	1	Unmodified	2982.3441	0.34406259	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		80.988	80.534	3	2.0555E-17	72996	160511_QHF_FH_JSI10i_1	101.86	99.487			1.2069	1.0856	4.6002	3	1	Plateau	1.3206	1.0905	NaN	1	0	Median	0.91671	1.0856	NaN	1	0	Median	1.2069	1.1781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	233750000	112200000	121550000	80120000	36342000	43778000	95744000	52533000	43211000	57887000	23322000	34566000	0	0	0	26523	1606	25121	165860;165861;165862;165863	224583;224584;224585;224586;224587	224584			5	
IVEDAPPIDLQAEAQHASGEVEEPPR	0	Unmodified	2796.3566	0.35661661	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		69.809	69.274	3	1.1677E-35	62661	160511_QHF_FH_JSI10i_1	156.88	146.76			1.0303	1.2232	12.468	3	0	Plateau	1.1543	0.95626	NaN	1	0	Median	1.0243	1.2232	NaN	1	0	Median	1.1444	1.1194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	319500000	158620000	160870000	88529000	35774000	52756000	130830000	74830000	55999000	100140000	48020000	52120000	0	0	0	26524	1366	25122	165864;165865;165866	224588;224589;224590;224591	224590			4	
IVEDEPNK	1	Unmodified	942.46583	0.46582612	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	11.118	9.4086	2	8.4367E-07	7728	160511_QHF_FH_JSI10i_1	151.29	98.609			0.9184	0.83	15.914	5	0	Median	1.0408	0.82375	NaN	1	0	Median	0.57285	0.66188	NaN	1	0	Median	0.96681	0.93862	NaN	1	0	Median	0.84608	0.91277	13.445	2	0	Median	4852100000	2480800000	2371300000	1142500000	572540000	569950000	1210400000	677910000	532480000	1211000000	626930000	584100000	1288100000	603410000	684730000	26525	1844	25123	165867;165868;165869;165870;165871	224592;224593;224594;224595;224596;224597;224598;224599	224595			8	
IVEEANK	1	Unmodified	801.42323	0.42323303	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.337	11.939	2	0.02574	9815	160511_QHF_FH_JSI12i_1	47.743	1.7273			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26526	1355	25124	165872	224600	224600			1	
IVEEETKK	2	Unmodified	974.52843	0.52842638	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	6.0189	5.613	2	0.001098	3581	160511_QHF_FH_JSI12i_2	94.302	66.778			0.92475	1.022	23.745	4	0	Median	1.8287	1.5832	NaN	1	0	Median	0.91844	1.0886	NaN	1	0	Median	0.9311	0.95947	NaN	1	0	Median	0.85771	0.95737	NaN	1	0	Median	241840000	126000000	115850000	42826000	17768000	25058000	49919000	27290000	22629000	76308000	37825000	38483000	72789000	43113000	29676000	26527	1847	25125	165873;165874;165875;165876	224601;224602	224601			2	
IVEEPQSNR	0	Unmodified	1070.5356	0.53563702	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	10.622	10.216	2	0.00021433	8195	160511_QHF_FH_JSI12i_1	84.916	75.005			0.94273	0.93695	11.041	5	0	Median	1.1505	0.93695	NaN	1	0	Median	0.84886	1.0479	16.284	2	0	Median	0.9927	0.97738	NaN	1	0	Median	0.82482	0.88111	NaN	1	0	Median	1159000000	619320000	539690000	281450000	127010000	154440000	288820000	158690000	130130000	234690000	119510000	115180000	354050000	214110000	139940000	26528	721	25126	165877;165878;165879;165880;165881	224603;224604;224605;224606;224607;224608;224609	224605			7	
IVEEQRK	1	Unmodified	900.50288	0.50288033	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	4.8468	4.4605	2	0.0087668	2379	160511_QHF_FH_JSI11i_2	82.671	3.0744			0.17905	0.16728	81.001	3	0	Plateau	0.10306	0.088692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.31107	0.31552	NaN	1	0	Median	0.35929	0.40011	NaN	1	0	Median	768710000	639650000	129050000	349660000	315310000	34351000	0	0	0	312590000	244450000	68135000	106460000	79889000	26568000	26529	5065	25127	165882;165883;165884	224610	224610			1	
IVEGISQPIWLVSDTR	0	Unmodified	1811.9781	0.97814893	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	89.333	88.682	2	3.6703E-05	78012	160511_QHF_FH_JSI11i_2	97.911	74.685			0.75303	0.82677	20.524	3	2	Median	NaN	NaN	NaN	0	0	Median	0.6693	0.8136	NaN	1	1	Median	1.19	1.1699	NaN	1	0	Median	0.75303	0.82677	NaN	1	1	Median	29485000	17866000	11619000	0	0	0	8259900	5523700	2736200	12787000	7006100	5781200	8438200	5336500	3101700	26530	2635	25128	165885;165886;165887;165888;165889	224611;224612;224613;224614;224615;224616;224617	224615			7	
IVEGISQPIWLVSDTRR	0	Unmodified	1968.0793	0.079259959	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.25	0.433		3	1							1	2	1		78.558	77.694	3	3.3192E-05	65191	160511_QHF_FH_JSI10i_3	76.85	60.357			0.76113	0.91225	18.514	4	0	Median	1.1744	0.98982	NaN	1	0	Median	0.76113	0.91225	7.6257	2	0	Median	0.65505	0.6597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187540000	100210000	87327000	49801000	29115000	20686000	112980000	60393000	52591000	24752000	10703000	14050000	0	0	0	26531	2635	25129	165890;165891;165892;165893	224618;224619;224620	224618			2	
IVEIGDENATLDGTDVLFTGR	0	Unmodified	2234.1067	0.1066565	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	91.302	91.059	2	4.0507E-85	82561	160511_QHF_FH_JSI10i_1	243.21	214.88			1.1165	1.198	11.546	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97072	1.1041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2842	1.2999	NaN	1	0	Median	42465000	20436000	22029000	0	0	0	24468000	12721000	11746000	0	0	0	17997000	7714400	10283000	26532	739	25130	165894;165895;165896;165897	224621;224622;224623;224624;224625;224626	224624			6	
IVEIPFNSTNK	1	Unmodified	1260.6714	0.67140222	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.48	4	3	2				2	1		2	2	6	2	58.962	55.772	2	1.1407E-23	48271	160511_QHF_FH_JSI11i_2	180.8	150.11			0.96777	1.0007	17.734	12	4	Median	1.2295	1.0197	2.4792	2	0	Median	0.9013	1.0956	5.4548	2	0	Median	0.98392	0.97947	25.05	6	3	Median	0.90633	0.94282	5.0563	2	1	Median	3268000000	1711600000	1556400000	600570000	277850000	322720000	839770000	458020000	381760000	1439700000	766740000	672950000	387930000	208980000	178950000	26533	821	25131	165898;165899;165900;165901;165902;165903;165904;165905;165906;165907;165908;165909	224627;224628;224629;224630;224631;224632;224633;224634;224635;224636;224637;224638;224639;224640;224641;224642;224643;224644;224645;224646;224647	224643			21	
IVEIPFNSTNKYQLSIHK	2	Acetyl (K)	2172.1579	0.15790421	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.58	71.266	3	3.9512E-25	39118	160513_QHF_FH_JSI11Kac_6	159.8	134.91			0.32012	0.31229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32012	0.31229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94125000	70964000	23161000	0	0	0	0	0	0	94125000	70964000	23161000	0	0	0	26534	821	25132	165910	224648;224649	224648	468;469		2	
IVEISYYNMNR	0	Unmodified	1400.6758	0.67583567	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			65.158	54.474	2	0.055716	27586	160513_QHF_FH_JSI10Kac_5	35.944	17.164			0.48805	0.57358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48805	0.57358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2905200	1781100	1124100	0	0	0	2905200	1781100	1124100	0	0	0	0	0	0	26535	5718	25133	165911	224650	224650			1	
IVEKHFR	1	Acetyl (K)	969.5396	0.53960019	2818	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		26.913	18.458	3	0.0043662	10969	160513_QHF_FH_JSI10Kac_6	73.616	52.316			0.59557	0.82521	51.296	3	0	Plateau	0.97735	0.82521	NaN	1	0	Median	0.89534	1.0577	NaN	1	0	Median	0.39617	0.39453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60420000	36139000	24280000	7177900	2954200	4223700	18649000	9152100	9496600	34593000	24033000	10560000	0	0	0	26536	2818	25134	165912;165913;165914	224651;224652;224653	224652	2692		3	
IVELPAPADFLSLSSETKPK	2	Unmodified	2141.162	0.16198654	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	99.173	99.075	3	8.9201E-09	85850	160511_QHF_FH_JSI12i_3	109.65	99.737			0.89073	0.97483	16.409	6	0	Median	0.88178	0.74408	NaN	1	0	Median	0.76361	0.93679	NaN	1	0	Median	0.96783	0.91675	14.318	2	0	Median	1.0264	1.0992	9.6734	2	0	Median	263270000	142510000	120760000	39850000	28422000	11428000	45474000	25701000	19773000	85267000	44786000	40481000	92678000	43599000	49079000	26537	3100	25135	165915;165916;165917;165918;165919;165920;165921	224654;224655;224656;224657;224658;224659;224660;224661;224662;224663;224664;224665;224666;224667	224667			14	
IVEMSTSK	1	Unmodified	893.45282	0.4528186	2060	P63241;Q9GZV4	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.6	6	5	3			3	4			4	7	5	5	16.586	13.613	2	0.00071366	5572	160513_QHF_FH_JSI9Kac_3	95.531	34.743			1.0808	0.99986	81.566	19	10	Median	1.2072	1.061	12.519	3	1	Median	1.8198	1.9613	115.42	7	7	Median	1.1103	1.0531	94.105	5	2	Median	0.90442	0.68705	20.196	4	0	Linear	61750000000	31214000000	30536000000	13809000000	6345800000	7463700000	21237000000	12467000000	8769800000	13149000000	5019100000	8130300000	13555000000	7382400000	6172700000	26538	2060	25136	165922;165923;165924;165925;165926;165927;165928;165929;165930;165931;165932;165933;165934;165935;165936;165937;165938;165939;165940;165941;165942	224668;224669;224670;224671;224672;224673;224674;224675;224676;224677;224678;224679;224680;224681;224682;224683;224684;224685;224686;224687;224688;224689;224690;224691;224692	224681			25	
IVEMSTSK	1	Oxidation (M)	909.44773	0.44773322	2060	P63241;Q9GZV4	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	yes	no	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.92	5.43	7	1	1		1	2	1			1	3	4	5	10.022	7.5304	2	0.0043724	2790	160513_QHF_FH_JSI11Kac_3	77.282	23.728			0.87884	0.95792	80.889	13	1	Median	0.2921	0.24487	NaN	1	0	Median	0.78288	0.96131	50.305	3	0	Median	1.0206	1.0033	66.373	4	1	Median	0.87884	0.92941	109.94	5	0	Median	14837000000	9146800000	5690400000	2030500000	1556400000	474150000	4228300000	2477700000	1750500000	4681900000	2500100000	2181700000	3896600000	2612600000	1284100000	26539	2060	25136	165943;165944;165945;165946;165947;165948;165949;165950;165951;165952;165953;165954;165955	224693;224694;224695;224696;224697;224698;224699;224700;224701;224702;224703	224699		1721	11	
IVENEKINAEK	2	Acetyl (K)	1327.6983	0.69834526	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		36.333	27.488	2	0.042871	15375	160513_QHF_FH_JSI10Kac_3	44.309	33.145			0.96827	1.0418	10.194	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94656	1.1197	NaN	1	0	Median	0.99047	0.96934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18871000	9390400	9480300	0	0	0	11147000	5183900	5963400	7723400	4206500	3516800	0	0	0	26540	4576	25137	165956;165957	224704	224704			1	
IVENSDAVTEILNNAELLK	1	Unmodified	2084.1001	0.10011456	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	8									2	2	2	2	101.33	101.23	2;3	0	91918	160511_QHF_FH_JSI11i_1	383.49	338.42			1.1113	0.99167	15.566	8	0	Median	1.1958	0.98777	3.8381	2	0	Median	0.78889	0.92499	6.5637	2	0	Median	1.3167	1.2913	10.461	2	0	Median	0.93706	0.9903	14.712	2	0	Median	1615300000	764500000	850840000	224910000	104520000	120390000	542610000	280010000	262600000	324630000	140450000	184180000	523190000	239520000	283670000	26541	2730	25138	165958;165959;165960;165961;165962;165963;165964;165965	224705;224706;224707;224708;224709;224710	224705			6	
IVEPEVVGESDSEVEGDAWR	0	Unmodified	2201.0124	0.012421765	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.978	67.669	2	1.5543E-07	61322	160511_QHF_FH_JSI10i_1	108.71	103.23			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26542	1847	25139	165966	224711	224711			1	
IVEPPENIQEK	1	Unmodified	1294.6769	0.67688153	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	35.342	34.653	2	0.0024572	31468	160511_QHF_FH_JSI12i_1	65.933	31.976			1.4407	1.4276	8.0891	3	2	Median	1.8358	1.5259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4407	1.4276	NaN	1	1	Median	1.2273	1.299	NaN	1	0	Median	359290000	142250000	217030000	115550000	39252000	76293000	0	0	0	134950000	60786000	74166000	108790000	42214000	66575000	26543	21	25140	165967;165968;165969	224712;224713;224714	224713			3	
IVEPYIAWGYPNLK	1	Unmodified	1661.8817	0.88172935	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.39	7	8	7						9	7	8	8	8	89.009	86.362	2;3	3.019E-45	43867	160513_QHF_FH_JSI10Kac_6	192.1	82.677			1.0006	1.3143	13.264	31	3	Linear	1.1549	0.97347	17.39	7	1	Median	0.88563	1.0582	9.0221	8	2	Median	1.0327	0.99628	11.705	8	0	Median	0.96925	1.0101	13.184	8	0	Median	9148000000	4472000000	4676000000	1507500000	712860000	794590000	2463600000	1410800000	1052800000	3262300000	1429200000	1833100000	1914700000	919160000	995540000	26544	1138	25141	165970;165971;165972;165973;165974;165975;165976;165977;165978;165979;165980;165981;165982;165983;165984;165985;165986;165987;165988;165989;165990;165991;165992;165993;165994;165995;165996;165997;165998;165999;166000	224715;224716;224717;224718;224719;224720;224721;224722;224723;224724;224725;224726;224727;224728;224729;224730;224731;224732;224733;224734;224735;224736;224737;224738;224739;224740;224741;224742;224743;224744;224745;224746;224747;224748;224749;224750;224751;224752;224753;224754;224755;224756;224757;224758;224759;224760;224761;224762;224763;224764;224765;224766;224767;224768;224769;224770;224771;224772	224770			57	
IVEPYIAWGYPNLKSVNELIYK	2	Acetyl (K)	2650.4047	0.40467642	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		96.985	87.579	3	0.00044828	49896	160513_QHF_FH_JSI11Kac_6	90.464	71.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47066000	47066000	0	0	0	0	0	0	0	47066000	47066000	0	0	0	0	26545	1138	25142	166001	224773	224773	991;992		1	
IVEPYVTWGFPNLK	1	Unmodified	1661.8817	0.88172935	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.832	98.657	3	0.0022344	86427	160511_QHF_FH_JSI11i_2	37.013	17.769			1.1317	1.1214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1317	1.1214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29601000	12363000	17239000	0	0	0	0	0	0	29601000	12363000	17239000	0	0	0	26546	3037	25143	166002	224774;224775	224775			2	
IVEQDTMPPK	1	Unmodified	1156.5798	0.57981002	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	1	4	24.828	24.21	2	0.00015286	21341	160511_QHF_FH_JSI12i_1	95.358	78.847			0.85525	0.78705	14.677	4	3	Median	0.89876	0.74091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81385	0.7665	NaN	1	1	Median	0.88727	0.91032	16.837	2	2	Median	309310000	170170000	139140000	75625000	42569000	33055000	0	0	0	71687000	39391000	32296000	162000000	88211000	73787000	26547	154	25144	166003;166004;166005;166006;166007;166008;166009	224776;224777;224778;224779;224780;224781;224782	224779			7	
IVEQPTVSVTEPK	1	Unmodified	1425.7715	0.7715102	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	42.642	41.89	2	5.9431E-05	37020	160511_QHF_FH_JSI9i_1	129.89	82.315			0.97644	0.99204	16.487	3	0	Median	1.2705	1.0348	NaN	1	0	Median	0.64425	0.76329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97644	0.99204	NaN	1	0	Median	289770000	154530000	135240000	81432000	36910000	44522000	95087000	60811000	34275000	0	0	0	113250000	56811000	56444000	26548	2618	25145	166010;166011;166012	224783;224784;224785;224786;224787	224786			5	
IVERDGLSEAAAQSR	0	Unmodified	1600.8169	0.81689726	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		24.542	23.839	3	7.6233E-05	20646	160511_QHF_FH_JSI10i_2	69.805	53.686			1.0497	1.1726	30.643	5	1	Median	1.3334	1.12	NaN	1	0	Median	1.0341	1.2455	3.6993	2	0	Median	0.87968	0.84388	46.527	2	1	Median	NaN	NaN	NaN	0	0	Median	370680000	177820000	192860000	75048000	26363000	48685000	221980000	116180000	105800000	73650000	35280000	38370000	0	0	0	26549	2346	25146	166013;166014;166015;166016;166017	224788;224789;224790;224791;224792;224793	224793			6	
IVESDVGDSFYIR	0	Unmodified	1498.7304	0.73037367	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			62.728	62.347	2	0.036514	56515	160511_QHF_FH_JSI10i_1	46.844	32.586			0.76324	0.86572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76324	0.86572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23601000	14969000	8632700	0	0	0	23601000	14969000	8632700	0	0	0	0	0	0	26550	2253	25147	166018	224794	224794			1	
IVETEAYLGPEDEAAHSR	0	Unmodified	1985.933	0.93304923	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	43.951	43.191	3	1.8228E-09	36953	160511_QHF_FH_JSI12i_2	110.37	103.47			1.0909	1.1002	11.258	7	1	Median	1.4317	1.2136	NaN	1	1	Median	0.89109	1.0603	5.2308	2	0	Median	1.0693	1.0548	5.3617	2	0	Median	1.2265	1.3064	8.3634	2	0	Median	643380000	339070000	304320000	60935000	29268000	31667000	196770000	117750000	79017000	230170000	106070000	124110000	155510000	85979000	69526000	26551	1320	25148	166019;166020;166021;166022;166023;166024;166025	224795;224796;224797;224798;224799;224800;224801;224802;224803;224804;224805;224806	224797			12	
IVETHQPIVETYYGPGR	0	Unmodified	1957.9898	0.98977625	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	48.633	47.779	3	5.8433E-06	41995	160511_QHF_FH_JSI10i_2	95.767	85.808			0.87027	0.94394	19.368	4	4	Median	1.4345	1.221	NaN	1	1	Median	0.79742	0.99134	NaN	1	1	Median	0.94978	0.89881	NaN	1	1	Median	0.71007	0.76867	NaN	1	1	Median	274340000	141440000	132890000	65409000	24768000	40641000	67520000	39700000	27820000	84108000	46970000	37138000	57302000	30007000	27295000	26552	4808	25149	166026;166027;166028;166029	224807;224808;224809;224810	224810			4	
IVEVLLMK	1	Oxidation (M)	959.57254	0.5725398	1474	P38159;O75526	RBMX;RBMXL2	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2	yes	no	0	0	1	0		By MS/MS		By MS/MS	15	0								2			1		1	62.359	51.682	2	0.0052092	26254	160513_QHF_FH_JSI12Kac_5	77.058	33.934			1.2092	1.4371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2092	1.4371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15851000	6512800	9338100	0	0	0	15851000	6512800	9338100	0	0	0	0	0	0	26553	1474	25150	166030;166031	224811;224812	224811		1146	2	
IVEWNGK	1	Unmodified	844.4443	0.44430282	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		25.093	24.335	2	0.0093675	20214	160511_QHF_FH_JSI11i_2	79.454	48.785			1.1918	1.2044	33.136	3	1	Median	2.2643	1.9271	NaN	1	0	Median	0.83919	1.0165	NaN	1	1	Median	1.1918	1.2044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	347760000	170830000	176930000	82563000	34035000	48528000	93149000	48570000	44579000	172050000	88224000	83827000	0	0	0	26554	2489	25151	166032;166033;166034	224813;224814	224813			2	
IVEYEKEMEK	2	Acetyl (K)	1338.6377	0.63771883	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	48.032	38.807	2	0.017383	20721	160513_QHF_FH_JSI10Kac_3	53.683	42.853			0.6328	0.74993	25.356	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6328	0.74993	NaN	1	0	Median	0.58635	0.57346	NaN	1	0	Median	0.89255	0.95196	NaN	1	0	Median	29388000	15035000	14353000	0	0	0	12431000	7111100	5320100	7700200	4072300	3627900	9257000	3851700	5405300	26555	589	25152	166035;166036;166037	224815;224816;224817	224817	306		3	
IVFAAGNFWGR	0	Unmodified	1236.6404	0.64037687	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.7	6.13			1						2	2	1			80.917	75.727	2	5.0343E-05	39365	160513_QHF_FH_JSI9Kac_6	98.629	64.708			0.87409	0.98878	17.76	3	1	Plateau	1.0216	0.86111	19.552	2	1	Median	0.87409	1.0445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	844220000	453840000	390370000	192740000	96392000	96351000	651470000	357450000	294020000	0	0	0	0	0	0	26556	808	25153	166038;166039;166040	224818;224819;224820	224819			3	
IVFAWWK	1	Unmodified	948.52216	0.52215921	4095	Q96GQ5	C16orf58	RUS1 family protein C16orf58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.42	76.179	2	0.018991	40294	160513_QHF_FH_JSI12Kac_6	71.359	71.359			0.97892	0.9798	3.897	4	0	Median	1.1167	0.95021	NaN	1	0	Median	0.86863	1.0386	NaN	1	0	Median	1.0484	0.99389	NaN	1	0	Median	0.91407	0.9659	NaN	1	0	Median	1684200000	856380000	827770000	401380000	181760000	219620000	586530000	321900000	264630000	426050000	215380000	210680000	270200000	137350000	132850000	26557	4095	25154	166041;166042;166043;166044	224821;224822;224823;224824;224825;224826;224827	224825			7	
IVFFKGDR	1	Acetyl (K)	1022.5549	0.5549159	5416	Q9ULZ9	MMP17	Matrix metalloproteinase-17	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	82.618	74.904	2	0.0021305	39396	160513_QHF_FH_JSI12Kac_6	99.375	73.925			0.91071	1.0361	8.0136	5	0	Median	1.2132	1.0361	NaN	1	0	Median	0.8533	1.0259	2.2504	2	0	Median	0.91071	0.87274	NaN	1	0	Median	1.0114	1.0664	NaN	1	0	Median	671800000	347130000	324660000	71495000	31739000	39755000	450180000	245150000	205030000	82708000	37389000	45320000	67415000	32857000	34558000	26558	5416	25155	166045;166046;166047;166048;166049	224828;224829;224830;224831;224832;224833	224830	3404		6	
IVFLEEASQQEK	1	Unmodified	1419.7246	0.72456001	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	2.75	7	8	4				1			4	8	5	3	55.711	54.304	2;3	1.7256E-41	48004	160511_QHF_FH_JSI10i_2	199.11	199.11			0.79448	0.79437	44.63	17	10	Median	1.2727	1.0724	33.518	4	2	Median	0.51685	0.59917	56.557	7	6	Median	0.88295	0.88469	37.351	4	1	Median	0.6507	0.69779	34.063	2	1	Median	2049000000	1156300000	892720000	418850000	216090000	202760000	579140000	346690000	232450000	737220000	434440000	302780000	313780000	159050000	154720000	26559	5536	25156	166050;166051;166052;166053;166054;166055;166056;166057;166058;166059;166060;166061;166062;166063;166064;166065;166066;166067;166068;166069	224834;224835;224836;224837;224838;224839;224840;224841;224842;224843;224844;224845;224846;224847;224848;224849;224850;224851;224852;224853;224854;224855;224856	224855			23	
IVFPHGITLDLVSR	0	Unmodified	1565.893	0.89296274	2259	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			88.673	87.563	3	0.0014199	73197	160511_QHF_FH_JSI10i_3	57.328	44.495			0.75497	0.88703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75497	0.88703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18540000	10822000	7717500	0	0	0	18540000	10822000	7717500	0	0	0	0	0	0	26560	2259	25157	166070	224857	224857			1	
IVFSGNLFQHQEDSK	1	Unmodified	1747.8529	0.85294842	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	5	3	2	63.235	60.013	2;3	7.5947E-15	53076	160511_QHF_FH_JSI11i_3	167.44	143.59			1.1435	1.0033	51.045	13	6	Median	1.2359	1.0033	24.967	3	1	Median	0.8156	0.95854	39.909	5	3	Median	1.0197	0.968	100.12	3	1	Median	1.1551	1.1924	21.791	2	1	Median	3400800000	1471300000	1929500000	649130000	222890000	426240000	805300000	362990000	442310000	1545700000	705590000	840080000	400700000	179870000	220830000	26561	4260	25158	166071;166072;166073;166074;166075;166076;166077;166078;166079;166080;166081;166082;166083	224858;224859;224860;224861;224862;224863;224864;224865;224866;224867;224868;224869;224870;224871;224872;224873;224874;224875;224876;224877;224878;224879;224880;224881	224860			24	
IVFSGNLFQHQEDSKK	2	Unmodified	1875.9479	0.94791144	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		52.63	51.852	3;4	2.0851E-05	45557	160511_QHF_FH_JSI11i_3	84.874	74.389			0.77234	0.79368	10.232	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65914	0.73829	NaN	1	0	Median	0.90497	0.85323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106990000	58051000	48937000	0	0	0	22073000	15402000	6671500	84915000	42650000	42265000	0	0	0	26562	4260	25159	166084;166085	224882;224883	224882			2	
IVFSPEEAK	1	Unmodified	1018.5335	0.53351176	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	40.877	40.019	2	0.0022514	35885	160511_QHF_FH_JSI10i_1	66.351	28.218			1.0715	1.0676	6.7655	4	2	Median	1.304	1.0702	NaN	1	0	Median	0.91345	1.0588	NaN	1	1	Median	1.0454	1.0651	NaN	1	1	Median	1.0982	1.2186	NaN	1	0	Median	557150000	303560000	253590000	90125000	41359000	48766000	199480000	122120000	77361000	126000000	67963000	58033000	141540000	72117000	69426000	26563	5223	25160	166086;166087;166088;166089;166090;166091	224884;224885;224886;224887;224888;224889;224890;224891	224888			8	
IVFSVKEK	2	Acetyl (K)	990.57498	0.57498264	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	1	0	0	1		By MS/MS			15	0								1			1			58.68	48.056	2	0.053763	24454	160513_QHF_FH_JSI10Kac_5	53.968	13.7			0.26028	0.30888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26028	0.30888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92967000	89231000	3736800	0	0	0	92967000	89231000	3736800	0	0	0	0	0	0	26564	5656	25161	166092	224892	224892			1	
IVFVLSSALNPWNK	1	Unmodified	1586.8821	0.8820637	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			8						10	4	4	6	4	96.439	91.652	2;3	1.0299E-201	83899	160511_QHF_FH_JSI10i_3	335.95	276.96			1.0525	1.042	40.799	18	4	Median	1.3187	1.1399	3.3833	4	0	Linear	0.97975	1.1283	10.109	4	0	Median	1.0727	1.0243	66.052	6	4	Median	0.81012	0.83785	19.368	4	0	Median	23577000000	10730000000	12847000000	3701600000	1549500000	2152100000	8027600000	4005700000	4021900000	7737900000	2878200000	4859700000	4109600000	2296400000	1813200000	26565	1395	25162	166093;166094;166095;166096;166097;166098;166099;166100;166101;166102;166103;166104;166105;166106;166107;166108;166109;166110	224893;224894;224895;224896;224897;224898;224899;224900;224901;224902;224903;224904;224905;224906;224907;224908;224909;224910;224911;224912;224913;224914;224915;224916;224917;224918;224919;224920;224921;224922;224923	224898			31	
IVFVPGCSIPLTIVK	1	Unmodified	1641.9528	0.9527858	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	101.04	100.91	2;3	0.00019291	86745	160511_QHF_FH_JSI12i_2	89.266	65.661			0.99302	1.1019	24.87	7	1	Median	1.3601	1.1556	NaN	1	0	Median	0.97674	1.1968	22.458	2	1	Median	0.87603	0.88652	46.635	2	0	Median	0.98844	1.0995	0.30541	2	0	Median	787000000	344590000	442410000	52054000	20687000	31368000	162140000	82851000	79286000	365580000	151340000	214240000	207230000	89708000	117520000	26566	1818	25163	166111;166112;166113;166114;166115;166116;166117	224924;224925;224926;224927;224928;224929;224930	224924			7	
IVFVTGNAK	1	Unmodified	947.54402	0.54401687	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.61	6.54	2	4	3				2	4	3	3	5	6	4	41.848	36.549	2	7.1384E-05	30964	160511_QHF_FH_JSI12i_3	96.253	43.954			0.89764	0.92718	18.477	18	1	Median	1.0381	0.88398	19.665	3	0	Median	0.80036	0.94991	18.642	5	0	Median	0.89817	0.87917	17.199	6	1	Median	1.0245	1.1012	13.16	4	0	Median	1255700000	596640000	659100000	198490000	82279000	116210000	229150000	117320000	111820000	462280000	219580000	242700000	365840000	177460000	188380000	26567	4532	25164	166118;166119;166120;166121;166122;166123;166124;166125;166126;166127;166128;166129;166130;166131;166132;166133;166134;166135	224931;224932;224933;224934;224935;224936;224937;224938;224939;224940;224941;224942;224943;224944;224945;224946;224947;224948;224949;224950;224951	224951			21	
IVGAPMHDLLLWNNATVTTCHSK	1	Unmodified	2577.2832	0.28319785	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.71	4.62		1	5						1		3	2	2	79.202	78.015	3;4	2.1274E-29	39831	160513_QHF_FH_JSI10Kac_6	150.83	129.94			1.0635	1.1537	10.879	7	0	Median	NaN	NaN	NaN	0	0	Median	0.99506	1.0839	4.8285	3	0	Plateau	1.0716	1.0199	2.3215	2	0	Median	1.2853	1.3167	1.4754	2	0	Median	1402100000	671680000	730450000	0	0	0	243770000	133540000	110220000	500330000	256950000	243380000	658030000	281180000	376850000	26568	1004	25165	166136;166137;166138;166139;166140;166141;166142	224952;224953;224954;224955;224956;224957;224958;224959;224960;224961;224962;224963;224964;224965;224966;224967	224967			16	
IVGAPMHDLLLWNNATVTTCHSK	1	Oxidation (M)	2593.2781	0.27811248	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	66.653	66.357	4	7.6218E-05	57380	160511_QHF_FH_JSI12i_3	52.909	45.288			1.1452	1.1734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1452	1.1734	NaN	1	0	Median	64015000	29120000	34895000	0	0	0	0	0	0	0	0	0	64015000	29120000	34895000	26569	1004	25165	166143	224968	224968		584	1	
IVGCSVHK	1	Unmodified	898.46947	0.46947171	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	3	5	4	3	8.653	6.4122	2;3	0.00044088	5573	160511_QHF_FH_JSI10i_3	93.429	73.642			1.1409	1.0993	59.507	15	4	Median	1.272	1.0993	7.6423	3	0	Median	1.2175	1.4504	76.278	5	3	Median	0.99708	0.96269	61.103	4	1	Median	1.0492	1.1458	9.7905	3	0	Median	8466000000	3979900000	4486100000	300030000	107540000	192500000	1633100000	662880000	970230000	2607400000	1316100000	1291300000	3925400000	1893300000	2032100000	26570	882	25166	166144;166145;166146;166147;166148;166149;166150;166151;166152;166153;166154;166155;166156;166157;166158	224969;224970;224971;224972;224973;224974;224975;224976;224977;224978;224979;224980;224981;224982;224983;224984;224985;224986;224987;224988;224989;224990	224974			22	
IVGDLAQFMVQNGLSR	0	Unmodified	1746.9087	0.90868916	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	92.331	91.858	2	4.0553E-22	81958	160511_QHF_FH_JSI11i_3	180.28	140.66			0.95894	0.95306	19.852	7	2	Median	1.3359	1.1373	26.584	2	0	Median	0.7408	0.86915	29.816	2	1	Median	0.97035	0.94623	2.7623	2	1	Median	0.95894	0.95306	NaN	1	0	Median	333610000	174530000	159080000	60480000	31038000	29443000	89752000	54885000	34866000	106300000	47411000	58889000	77081000	41199000	35882000	26571	1002	25167	166159;166160;166161;166162;166163;166164;166165	224991;224992;224993;224994;224995;224996;224997;224998;224999;225000;225001	224992			11	
IVGEFLQPGGYHVLK	1	Unmodified	1655.9035	0.90352742	2541	Q14534	SQLE	Squalene monooxygenase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			69.601	68.13	3	0.057507	57016	160511_QHF_FH_JSI10i_3	17.917	3.4852			0.62513	0.7263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62513	0.7263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28262000	19216000	9046100	0	0	0	28262000	19216000	9046100	0	0	0	0	0	0	26572	2541	25168	166166	225002	225002			1	
IVGELEQMVSEDVPLDHR	0	Unmodified	2065.015	0.015004722	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	1	2	5	82.538	81.739	2;3	4.1246E-11	70830	160511_QHF_FH_JSI12i_2	140.08	125.82			5.6601	6.7908	224.16	7	7	Median	14.904	12.83	NaN	1	1	Median	5.6601	6.7908	NaN	1	1	Median	8.6563	8.5828	NaN	1	1	Median	1.1714	1.2968	253.72	4	4	Median	1085800000	342930000	742850000	135950000	4232000	131710000	149610000	20964000	128650000	219360000	22264000	197090000	580870000	295470000	285390000	26573	2147	25169	166167;166168;166169;166170;166171;166172;166173;166174;166175	225003;225004;225005;225006;225007;225008;225009;225010;225011	225006			9	
IVGGSAAPPGAWPWLVR	0	Unmodified	1732.9413	0.94130991	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	2.88		14	7						1	5	6	6	5	92.72	92.273	2;3	2.2853E-31	82099	160511_QHF_FH_JSI11i_3	196.76	148.32			0.8533	0.89807	30.578	18	5	Median	0.99348	0.83296	34.359	5	2	Median	0.77871	0.86405	33.481	5	1	Plateau	0.84274	0.84961	19.761	4	1	Median	0.90752	0.94178	38.283	4	1	Median	1398000000	743300000	654710000	286910000	133810000	153100000	405460000	232370000	173090000	374400000	199040000	175350000	331250000	178080000	153170000	26574	950	25170	166176;166177;166178;166179;166180;166181;166182;166183;166184;166185;166186;166187;166188;166189;166190;166191;166192;166193;166194;166195;166196;166197	225012;225013;225014;225015;225016;225017;225018;225019;225020;225021;225022;225023;225024;225025;225026;225027;225028;225029;225030;225031;225032;225033;225034;225035;225036;225037;225038;225039;225040;225041;225042	225012			30	
IVGGVTHANSYYK	1	Unmodified	1407.7147	0.71466402	5052	Q9NVV0	TMEM38B	Trimeric intracellular cation channel type B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	24.661	24.227	3	0.00058486	20022	160511_QHF_FH_JSI12i_3	65.805	53.178			1.057	1.0519	39.954	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2145	1.4296	NaN	1	1	Median	0.71272	0.64726	NaN	1	1	Median	1.057	1.0519	NaN	1	1	Median	153490000	62408000	91084000	0	0	0	16542000	7620700	8921000	33063000	18025000	15037000	103890000	36762000	67125000	26575	5052	25171	166198;166199;166200	225043;225044;225045	225045			3	
IVGHLTHALK	1	Unmodified	1087.6502	0.65021327	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			29							8	7	4	10	19.476	18.858	2;3	2.6586E-09	15431	160511_QHF_FH_JSI9i_3	133.23	96.839			0.59009	0.53174	187.4	26	17	Median	0.81864	0.66424	206.61	8	4	Median	0.90512	1.0425	180.08	6	5	Median	1.7428	1.6226	217.09	4	3	Median	0.21113	0.21546	173.47	8	5	Median	5356700000	2224800000	3131900000	1799100000	657350000	1141700000	900810000	403440000	497370000	943860000	249080000	694780000	1713000000	914920000	798060000	26576	1249	25172	166201;166202;166203;166204;166205;166206;166207;166208;166209;166210;166211;166212;166213;166214;166215;166216;166217;166218;166219;166220;166221;166222;166223;166224;166225;166226;166227;166228;166229	225046;225047;225048;225049;225050;225051;225052;225053;225054;225055;225056;225057;225058;225059;225060;225061;225062;225063;225064;225065;225066;225067;225068;225069;225070;225071;225072;225073;225074;225075	225061			30	
IVGIPVPK	1	Unmodified	821.53747	0.53747492	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.226	52.257	2	0.030812	44756	160511_QHF_FH_JSI12i_2	41.502	41.502			0.99871	1.0252	15.363	4	0	Median	1.1875	1.056	NaN	1	0	Median	0.64598	0.78516	NaN	1	0	Median	1.0118	0.99533	NaN	1	0	Median	0.98582	1.1115	NaN	1	0	Median	176190000	92820000	83372000	36569000	17539000	19030000	37220000	22412000	14808000	55761000	28485000	27276000	46641000	24384000	22257000	26577	3306	25173	166230;166231;166232;166233	225076;225077	225076			2	
IVGLQYKK	2	Unmodified	947.5804	0.58040237	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	23.986	23.642	3	0.00097017	19993	160511_QHF_FH_JSI11i_3	75.854	39.521			2.2958	2.0799	92.185	4	4	Median	2.4635	1.9741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.5647	4.3496	NaN	1	1	Median	1.0103	1.0292	106.89	2	2	Median	799740000	301370000	498370000	173740000	67118000	106620000	0	0	0	126990000	26848000	100140000	499010000	207400000	291600000	26578	999;2197	25174	166234;166235;166236;166237	225078;225079;225080;225081	225078			4	
IVGNGSEQQLQK	1	Unmodified	1299.6783	0.67827852	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	17.506	17.048	2	0.00014037	14069	160511_QHF_FH_JSI9i_1	82.645	49.753			1.2467	1.2734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2467	1.2734	NaN	1	0	Median	66385000	33446000	32939000	0	0	0	0	0	0	0	0	0	66385000	33446000	32939000	26579	5599	25175	166238;166239;166240;166241	225082;225083;225084;225085	225084			4	
IVGPEENLSQAEAR	0	Unmodified	1511.758	0.7579854	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	39.802	39.344	2	3.1007E-05	35731	160511_QHF_FH_JSI12i_1	80.979	50.415			0.99644	1.0217	5.267	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0784	1.0605	NaN	1	1	Median	0.92067	0.98437	NaN	1	1	Median	657520000	340270000	317250000	0	0	0	0	0	0	396070000	205100000	190970000	261450000	135170000	126280000	26580	140	25176	166242;166243;166244;166245	225086;225087;225088;225089	225089			4	
IVGPQVVIFCMHHQR	0	Unmodified	1819.9338	0.93379847	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	16	0									3	1	1		1	70.505	61.864	4	0.00095731	33748	160513_QHF_FH_JSI10Kac_6	55.841	49.937			0.72984	0.87368	24.713	3	0	Plateau	1.3194	1.1265	NaN	1	0	Median	0.72983	0.87368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3223	1.4321	NaN	1	0	Median	63243000	34413000	28830000	11946000	5608300	6337700	39485000	24261000	15224000	0	0	0	11812000	4543100	7268900	26581	3843	25177	166246;166247;166248	225090	225090			1	
IVGSVEFDSMMNTV	0	Unmodified	1527.6949	0.69491614	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	93.045	92.651	2	0.011431	84227	160511_QHF_FH_JSI12i_1	47.187	35.321			0.85758	0.89175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85758	0.89175	NaN	1	0	Median	19556000	10521000	9035400	0	0	0	0	0	0	0	0	0	19556000	10521000	9035400	26582	1528	25178	166249	225091	225091			1	
IVGTTAYMAPEALRGEITPK	1	Unmodified	2117.1191	0.11907586	5081	Q9NWZ3	IRAK4	Interleukin-1 receptor-associated kinase 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	69.585	69.436	3	0.0090057	60164	160511_QHF_FH_JSI12i_3	38.577	23.807			1.1646	1.1475	22.847	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4527	1.3487	NaN	1	1	Median	0.93358	0.97636	NaN	1	0	Median	54090000	20362000	33728000	0	0	0	0	0	0	16143000	5338000	10805000	37947000	15024000	22923000	26583	5081	25179	166250;166251	225092;225093	225093			2	
IVGWYHTGPK	1	Unmodified	1156.6029	0.60292873	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			12						8	6	4	6	4	36.276	31.72	2;3	5.9935E-11	26411	160511_QHF_FH_JSI10i_3	123.63	113.1			1.0581	0.98891	41.598	18	6	Median	1.1066	0.94602	66.018	6	4	Median	1.0742	1.2357	13.188	4	0	Median	1.25	1.1861	28.149	4	2	Median	0.72692	0.73977	10.044	4	0	Linear	5863400000	2613000000	3250400000	1346200000	587700000	758530000	761120000	339440000	421670000	1359000000	596240000	762770000	2397000000	1089600000	1307400000	26584	1748	25180	166252;166253;166254;166255;166256;166257;166258;166259;166260;166261;166262;166263;166264;166265;166266;166267;166268;166269;166270;166271	225094;225095;225096;225097;225098;225099;225100;225101;225102;225103;225104;225105;225106;225107;225108;225109;225110;225111;225112;225113;225114;225115;225116;225117;225118;225119;225120;225121;225122;225123;225124;225125;225126;225127;225128;225129;225130;225131	225100			38	
IVGWYHTGPKLHK	2	Acetyl (K)	1576.8514	0.85143227	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.93	43.205	3	0.0076279	23387	160513_QHF_FH_JSI11Kac_6	52.576	39.743			0.73474	0.74257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73474	0.74257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7471400	3719400	3751900	0	0	0	0	0	0	7471400	3719400	3751900	0	0	0	26585	1748	25181	166272	225132	225132	1769		1	
IVGYVLAK	1	Unmodified	861.53239	0.53238955	1514	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	48.489	42.303	2	0.017217	23000	160513_QHF_FH_JSI11Kac_6	67.035	35.732			1.2674	1.2848	41.792	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.89942	1.0634	NaN	1	0	Median	0.57524	0.5775	NaN	1	1	Median	1.2674	1.2848	NaN	1	0	Median	238690000	99027000	139670000	0	0	0	34457000	19006000	15451000	35559000	21059000	14499000	168680000	58962000	109720000	26586	1514	25182	166273;166274;166275	225133;225134;225135	225133			3	
IVHAFDMEDLGDK	1	Oxidation (M)	1504.6868	0.68679429	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									1	3	39.162	39.037	3	0.00023529	33074	160511_QHF_FH_JSI12i_3	64.104	55.505			1.9007	1.9532	62.865	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8798	2.6612	NaN	1	0	Median	1.2094	1.2449	63.692	2	1	Median	262980000	84196000	178780000	0	0	0	0	0	0	72373000	21515000	50858000	190610000	62681000	127930000	26587	5144	25183	166276;166277;166278;166279	225136;225137;225138	225138		2588	3	
IVHAFDMEDLGDK	1	Unmodified	1488.6919	0.69187967	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.19		8	5					2	4	3	5	4	7	60.284	56.341	2;3	9.6085E-07	48305	160511_QHF_FH_JSI12i_3	128.17	117.64			0.98719	0.98958	17.614	17	3	Median	1.0698	0.92336	6.3524	2	0	Median	0.79886	0.98196	23.622	4	0	Median	0.96783	0.97874	6.2911	4	1	Median	0.98719	1.0261	20.604	7	2	Median	4494200000	2115600000	2378600000	574500000	227990000	346510000	994780000	487900000	506890000	1218300000	633540000	584740000	1706600000	766130000	940500000	26588	5144	25183	166280;166281;166282;166283;166284;166285;166286;166287;166288;166289;166290;166291;166292;166293;166294;166295;166296;166297;166298	225139;225140;225141;225142;225143;225144;225145;225146;225147;225148;225149;225150;225151;225152;225153;225154;225155;225156;225157;225158;225159;225160;225161;225162;225163;225164;225165;225166;225167	225164			27	
IVHELNTTVPTASFAGK	1	Unmodified	1783.9468	0.9468488	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		10	8							4	3	6	5	53.067	52.373	2;3	4.2184E-11	45914	160511_QHF_FH_JSI9i_2	110.07	85.686			1.1969	1.1583	23.537	16	10	Median	1.2933	1.1137	23.896	3	2	Median	0.91229	1.1299	2.89	2	1	Median	1.4071	1.3497	27.096	6	4	Median	1.0349	1.1635	28.904	5	3	Median	2650000000	1311100000	1338900000	302120000	141800000	160320000	540670000	356770000	183900000	922070000	452740000	469320000	885150000	359750000	525400000	26589	2842	25184	166299;166300;166301;166302;166303;166304;166305;166306;166307;166308;166309;166310;166311;166312;166313;166314;166315;166316	225168;225169;225170;225171;225172;225173;225174;225175;225176;225177;225178;225179;225180;225181;225182;225183;225184;225185;225186;225187;225188;225189;225190;225191;225192	225179			25	
IVHGYAEK	1	Unmodified	915.48142	0.48141661	5514	Q9Y2D9;Q9UFB7	ZNF652;ZBTB47	Zinc finger protein 652;Zinc finger and BTB domain-containing protein 47	yes	no	0	0	0	0	By MS/MS				9	6			1					1		2				4.4029	-0.5256	2	0.017211	1855	160511_QHF_FH_JSI9i_3	47.067	3.8206			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26590	5514	25185	166317;166318	225193;225194	225194			2	
IVHILNMTSAK	1	Unmodified	1225.6853	0.68527815	246	O15111	CHUK	Inhibitor of nuclear factor kappa-B kinase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			44.854	43.282	2;3	0.017155	36117	160511_QHF_FH_JSI10i_3	37.94	29.657			1.3412	1.5375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3412	1.5375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47383000	20386000	26997000	6034200	0	6034200	41349000	20386000	20963000	0	0	0	0	0	0	26591	246	25186	166319;166320	225195;225196	225195			2	
IVHSLDYYNTCEYPNEDEMPNR	0	Unmodified	2758.1639	0.16393016	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	56.363	56.239	3	2.0232E-10	48352	160511_QHF_FH_JSI12i_3	114.46	107.43			0.67173	0.6657	18.585	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79113	0.7592	NaN	1	0	Median	0.57036	0.58373	NaN	1	1	Median	92199000	63089000	29110000	0	0	0	0	0	0	55242000	34034000	21209000	36957000	29055000	7901800	26592	4521	25187	166321;166322;166323	225197;225198;225199;225200	225200			4	
IVHSSMTR	0	Unmodified	929.47529	0.47528537	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.71	5.87			5						2	2	3	2		6.5646	3.9592	2;3	0.0034924	3835	160511_QHF_FH_JSI9i_3	72.138	46.029			0.83375	0.92004	19.41	7	2	Median	1.4508	1.1702	11.359	2	0	Median	0.80582	0.92004	11.346	3	1	Median	0.80486	0.76351	7.0151	2	1	Median	NaN	NaN	NaN	0	0	Median	998730000	577630000	421100000	515130000	270290000	244840000	431560000	278490000	153070000	52049000	28858000	23190000	0	0	0	26593	4114	25188	166324;166325;166326;166327;166328;166329;166330	225201;225202;225203;225204	225202			3	
IVHYYFDHNSNWNLLIR	0	Unmodified	2203.0963	0.096307007	4742	Q9H6E4	CCDC134	Coiled-coil domain-containing protein 134	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.314	72.565	3	4.2248E-05	39551	160513_QHF_FH_JSI10Kac_6	86.455	66.087			0.61153	0.70587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61153	0.70587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53597000	32930000	20667000	0	0	0	53597000	32930000	20667000	0	0	0	0	0	0	26594	4742	25189	166331	225205	225205			0	
IVIDFDSINSRPSQK	1	Unmodified	1717.8999	0.89989861	1393	P32321	DCTD	Deoxycytidylate deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		62.047	61.039	3	0.00037092	54145	160511_QHF_FH_JSI11i_3	66.673	49.392			1.1388	1.0636	5.7996	3	0	Plateau	1.4677	1.1944	NaN	1	0	Median	0.97419	1.1244	NaN	1	0	Median	1.1388	1.0636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	263910000	126950000	136960000	55475000	20047000	35428000	67106000	35699000	31407000	141330000	71208000	70124000	0	0	0	26595	1393	25190	166332;166333;166334	225206;225207;225208;225209	225207			4	
IVIEDYVQHLSGYHFK	1	Unmodified	1946.989	0.98904797	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	80.09	79.849	4	0.0042887	69376	160511_QHF_FH_JSI12i_3	48.823	45.161			1.4813	1.5035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4813	1.5035	NaN	1	1	Median	34284000	13209000	21075000	0	0	0	0	0	0	0	0	0	34284000	13209000	21075000	26596	1434	25191	166335	225210	225210			1	
IVIFDMPWLMNAAFK	1	Unmodified	1794.9201	0.92010547	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		98.911	91.342	2	0.00016041	51432	160513_QHF_FH_JSI11Kac_6	100.55	70.223			0.90553	0.96449	9.1116	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76824	0.90431	NaN	1	1	Median	1.0674	1.0287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138800000	75476000	63329000	0	0	0	67724000	42018000	25706000	71081000	33458000	37623000	0	0	0	26597	3668	25192	166336;166337	225211;225212	225211			1	
IVIFQSKPEIQYAPHLEQEPTNLR	1	Unmodified	2849.5076	0.50757837	4523	Q9BXS4	TMEM59	Transmembrane protein 59	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			76.052	74.619	4	0.002145	61406	160511_QHF_FH_JSI9i_3	36.576	32.929			1.5669	1.5287	25.586	2	2	Median	1.5544	1.2757	NaN	1	1	Median	1.5795	1.8318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45945000	23397000	22547000	21470000	11138000	10331000	24475000	12259000	12216000	0	0	0	0	0	0	26598	4523	25193	166338;166339	225213;225214	225214			2	
IVIFTQGR	0	Unmodified	932.54435	0.54435122	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	2	3	2	2	49.954	44.253	2	0.0054256	37151	160511_QHF_FH_JSI10i_3	65.676	37.422			0.86367	0.9077	17.489	9	0	Median	1.2918	1.0891	16.871	2	0	Median	0.82517	0.97137	9.68	3	0	Plateau	0.85696	0.82886	1.6675	2	0	Median	0.84434	0.87273	33.581	2	0	Median	600540000	312400000	288140000	125750000	52108000	73639000	167790000	96896000	70897000	169550000	89764000	79790000	137440000	73631000	63812000	26599	1856	25194	166340;166341;166342;166343;166344;166345;166346;166347;166348	225215;225216;225217;225218;225219;225220;225221;225222;225223	225217			9	
IVIGLFGK	1	Unmodified	845.53747	0.53747492	1569	P45877	PPIC	Peptidyl-prolyl cis-trans isomerase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	75.03	74.204	2	0.0057109	66025	160511_QHF_FH_JSI11i_3	64.803	42.181			0.94064	0.88699	9.5696	8	0	Median	1.0252	0.86371	6.7404	2	0	Median	0.78172	0.92472	9.204	2	0	Median	0.94929	0.92722	9.2507	2	0	Median	0.83097	0.88192	18.732	2	0	Median	469490000	226780000	242720000	73980000	34896000	39084000	74249000	44389000	29860000	122420000	63575000	58847000	198840000	83915000	114930000	26600	1569	25195	166349;166350;166351;166352;166353;166354;166355;166356	225224;225225;225226;225227;225228;225229;225230;225231;225232;225233;225234	225224			11	
IVIGYQSHADTATK	1	Unmodified	1502.7729	0.77290718	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.16	6.48	1	9	6					2	7	6	6	8	5	33.715	29.846	2;3	2.8417E-21	25722	160511_QHF_FH_JSI11i_3	172.11	123.32			1.0447	1.0203	20.158	24	3	Median	1.1301	0.9606	16.878	6	0	Median	0.9979	1.2126	15.629	5	1	Median	1.0355	0.99074	16.553	8	2	Median	1.0487	1.1289	26.129	5	0	Median	5690900000	2652700000	3038300000	519090000	212400000	306690000	766330000	359440000	406890000	2110400000	984240000	1126100000	2295200000	1096600000	1198600000	26601	853	25196	166357;166358;166359;166360;166361;166362;166363;166364;166365;166366;166367;166368;166369;166370;166371;166372;166373;166374;166375;166376;166377;166378;166379;166380;166381	225235;225236;225237;225238;225239;225240;225241;225242;225243;225244;225245;225246;225247;225248;225249;225250;225251;225252;225253;225254;225255;225256;225257;225258;225259;225260;225261;225262;225263;225264;225265;225266;225267;225268;225269;225270;225271;225272;225273	225239			38	
IVILDEADSMTSAAQAALR	0	Unmodified	1974.0092	0.0091910629	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			96.102	96.118	2;3	0.00012251	87136	160511_QHF_FH_JSI10i_1	42.78	36.363			0.86222	1.0042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86222	1.0042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14569000	6384200	8184900	0	0	0	14569000	6384200	8184900	0	0	0	0	0	0	26602	1428	25197	166382;166383	225274;225275	225274			2	
IVILDEADSMTSAAQAALRR	0	Unmodified	2130.1103	0.11030209	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			90.836	89.784	3	9.7742E-06	75003	160511_QHF_FH_JSI10i_3	70.584	50.916			1.0392	1.1898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0392	1.1898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59761000	30844000	28917000	0	0	0	59761000	30844000	28917000	0	0	0	0	0	0	26603	1428	25198	166384	225276;225277	225277			2	
IVILEYQPSK	1	Unmodified	1188.6754	0.67542497	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.84	6.47	4	3				1	4	4	3	4	7	4	4	64.808	58.218	2	6.3754E-12	31328	160513_QHF_FH_JSI11Kac_5	172.21	138.42			1.0386	1.0587	25.343	16	1	Median	1.3134	1.0816	32.316	3	1	Plateau	0.81836	0.98398	22.856	6	0	Median	1.0926	1.0741	13.142	4	0	Median	1.0581	1.1736	26.982	3	0	Median	1277700000	656920000	620830000	95999000	48146000	47854000	487840000	264500000	223350000	551630000	279720000	271910000	142270000	64551000	77723000	26604	2665	25199	166385;166386;166387;166388;166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400;166401;166402;166403	225278;225279;225280;225281;225282;225283;225284;225285;225286;225287;225288;225289;225290;225291;225292;225293;225294;225295;225296;225297;225298;225299;225300;225301;225302;225303;225304;225305;225306;225307;225308	225298			29	
IVILPDYLEIAR	0	Unmodified	1413.8232	0.82315184	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	3	3	2	99.609	99.48	2	1.6153E-05	87290	160511_QHF_FH_JSI11i_2	113.22	104.64			0.71974	0.83602	22.753	10	0	Median	1.0688	0.89612	0.63804	2	0	Median	0.69834	0.80354	17.501	3	0	Median	0.87604	0.8859	17.851	3	0	Plateau	0.61932	0.6506	48.367	2	0	Median	941700000	512660000	429040000	156570000	67730000	88845000	228370000	132980000	95391000	330430000	196850000	133580000	226310000	115090000	111220000	26605	1573	25200	166404;166405;166406;166407;166408;166409;166410;166411;166412;166413	225309;225310;225311;225312;225313;225314;225315;225316;225317;225318;225319;225320;225321	225320			13	
IVIMPCKCAPSR	1	Acetyl (K)	1472.7302	0.73019621	436	O60673	REV3L	DNA polymerase zeta catalytic subunit	yes	yes	1	0	0	1	By matching		By MS/MS		16	0									2	1		1		83.57	74.603	2	0.019568	41213	160513_QHF_FH_JSI11Kac_6	48.64	27.77			1.4387	1.3073	39.876	2	0	Median	2.0013	1.7331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0343	0.98608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94276000	43990000	50286000	46489000	17964000	28525000	0	0	0	47787000	26027000	21760000	0	0	0	26606	436	25201	166414;166415	225322;225323	225323	222		2	
IVIPLIEEASK	1	Unmodified	1210.7173	0.71728978	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.504	83.91	2	0.048581	73755	160511_QHF_FH_JSI11i_2	43.77	27.888			1.268	1.2829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.268	1.2829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27348000	13169000	14179000	0	0	0	0	0	0	27348000	13169000	14179000	0	0	0	26607	1832	25202	166416	225324	225324			1	
IVIPNEESVVIYYK	1	Unmodified	1664.9025	0.90252437	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.972	81.1	2	0.00090909	71319	160511_QHF_FH_JSI11i_2	84.658	64.897			0.75487	0.7941	1.1919	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78578	0.80082	NaN	1	1	Median	0.72517	0.78743	NaN	1	1	Median	45575000	27306000	18269000	0	0	0	0	0	0	27771000	17210000	10561000	17804000	10096000	7708200	26608	1532	25203	166417;166418	225325;225326	225326			2	
IVIQKYHTVNGHNCEVR	1	Acetyl (K)	2108.0585	0.058541292	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.51	34.87	3	0.0057235	19072	160513_QHF_FH_JSI11Kac_6	57.525	47.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6292500	6292500	0	0	0	0	0	0	0	6292500	6292500	0	0	0	0	26609	936	25204	166419	225327	225327	696		1	
IVITDCGQLS	0	Unmodified	1104.5485	0.5485099	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	54.624	53.858	2	0.0054281	47913	160511_QHF_FH_JSI9i_1	63.565	43.788			1.1395	1.0555	38.322	5	5	Median	1.618	1.3735	49.763	2	2	Median	0.87512	1.0555	NaN	1	1	Median	0.76149	0.73472	NaN	1	1	Median	1.4511	1.4986	NaN	1	1	Median	305020000	151540000	153480000	57293000	28093000	29200000	65109000	30917000	34192000	108910000	59723000	49183000	73714000	32806000	40909000	26610	1348	25205	166420;166421;166422;166423;166424	225328;225329;225330;225331;225332	225332			5	
IVIVSKMMK	2	2 Oxidation (M)	1079.6083	0.60827338	3717	Q8TD43	TRPM4	Transient receptor potential cation channel subfamily M member 4	yes	yes	0	0	2	1		By MS/MS			16	0									1		1			35.724	27.205	2	0.023588	15373	160513_QHF_FH_JSI10Kac_6	45.718	20.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2310100	2310100	0	0	0	0	2310100	2310100	0	0	0	0	0	0	0	26611	3717	25206	166425	225333	225333			1	
IVIWDFLTR	0	Unmodified	1161.6546	0.65462995	2651	Q15291	RBBP5	Retinoblastoma-binding protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	95.875	90.277	2	1.0438E-07	88218	160511_QHF_FH_JSI12i_3	125.31	88.554			1.071	1.0473	9.5701	6	0	Median	1.1201	0.9595	5.342	2	0	Median	0.94716	1.1179	NaN	1	0	Median	1.0993	1.0576	14.474	2	0	Median	1.038	1.1008	NaN	1	0	Median	665160000	319670000	345490000	180540000	82352000	98190000	134110000	78890000	55217000	284240000	128740000	155500000	66274000	29688000	36586000	26612	2651	25207	166426;166427;166428;166429;166430;166431;166432;166433	225334;225335;225336;225337;225338;225339;225340;225341;225342	225339			9	
IVIYVQQTTNK	1	Unmodified	1305.7293	0.72925145	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.6	5.82	1							2	2	1	3	1		53.653	43.143	2	0.00021923	22103	160513_QHF_FH_JSI10Kac_5	89.886	63.097			0.62374	0.74027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62374	0.74027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4500100	2509800	1990300	0	0	0	4500100	2509800	1990300	0	0	0	0	0	0	26613	5599	25208	166434;166435;166436;166437;166438	225343;225344;225345;225346;225347	225345			5	
IVKPAEIPELK	2	Unmodified	1235.7489	0.74892426	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	48.399	48.158	3	0.0057858	41137	160511_QHF_FH_JSI12i_3	49.929	25.074			0.74883	0.81952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74883	0.81952	NaN	1	1	Median	70989000	35054000	35935000	0	0	0	0	0	0	0	0	0	70989000	35054000	35935000	26614	4505	25209	166439	225348	225348			1	
IVKPNGEKPDEFESGISQALLELEMNSDLK	3	Oxidation (M)	3345.665	0.6650028	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	1	2		By MS/MS	By MS/MS		3	0			2								1	1		101.19	101.11	4	2.8844E-39	83679	160511_QHF_FH_JSI10i_3	152.16	141.74			0.93994	0.9767	22.307	2	1	Median	NaN	NaN	NaN	0	0	Median	0.99044	1.1436	NaN	1	1	Median	0.89201	0.83417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1195800000	651890000	543860000	0	0	0	356710000	239310000	117400000	839040000	412580000	426460000	0	0	0	26615	1979	25210	166440;166441	225349;225350	225350		1645	2	
IVKPNGEKPDEFESGISQALLELEMNSDLK	3	Unmodified	3329.6701	0.67008818	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		2	5						1	1	3	2	2	100.22	98.99	3;4	0	90288	160511_QHF_FH_JSI11i_3	433.99	410.77			0.92094	1.0368	28.508	7	0	Median	1.0561	0.89647	NaN	1	0	Median	0.89113	1.0436	3.5023	3	0	Plateau	0.92094	0.87518	NaN	1	0	Median	0.94146	0.96954	66.291	2	0	Median	6997300000	3370200000	3627100000	943710000	469700000	474010000	2171500000	1166300000	1005200000	3102000000	1342100000	1759800000	780090000	392070000	388020000	26616	1979	25210	166442;166443;166444;166445;166446;166447;166448;166449	225351;225352;225353;225354;225355;225356;225357;225358;225359;225360	225352			9	
IVLAAAGGVSHDELLDLAK	1	Unmodified	1891.0415	0.041477469	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			81.315	80.627	3	0.00037808	71831	160511_QHF_FH_JSI10i_2	57.496	43.241			0.95468	1.1559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95468	1.1559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42164000	27369000	14796000	0	0	0	42164000	27369000	14796000	0	0	0	0	0	0	26617	527	25211	166450;166451	225361;225362	225362			2	
IVLANDPDADRLAVAEK	1	Unmodified	1808.9632	0.96322715	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.745	1	2	3								1	3	2	54.821	54.434	3	2.592E-05	47872	160511_QHF_FH_JSI10i_2	83.758	49.481			1.013	1.0724	42.352	6	1	Median	NaN	NaN	NaN	0	0	Median	0.97562	1.2121	NaN	1	0	Median	1.0518	1.0198	42.771	3	0	Median	0.74756	0.75756	61.587	2	1	Median	690430000	394540000	295890000	0	0	0	98814000	59874000	38940000	373910000	219310000	154600000	217700000	115350000	102350000	26618	4080	25212	166452;166453;166454;166455;166456;166457	225363;225364;225365;225366;225367;225368;225369	225366			6	
IVLDNSVFSEHR	0	Unmodified	1414.7205	0.72047768	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.03	6.41	3	9	10					4	8	8	8	9	9	56.389	52.576	2;3	1.1122E-24	28506	160513_QHF_FH_JSI11Kac_6	142.91	136.22			1.0767	1.1334	17.576	33	6	Median	1.5377	1.3056	22.737	7	1	Median	0.94936	1.1419	8.4394	8	0	Median	1.1433	1.1334	17.886	9	2	Median	0.97949	1.0202	19.615	9	3	Median	23996000000	11059000000	12938000000	1686000000	645860000	1040100000	2449700000	1144800000	1304900000	8857500000	3830800000	5026700000	11003000000	5437300000	5565900000	26619	1807;2155	25213	166458;166459;166460;166461;166462;166463;166464;166465;166466;166467;166468;166469;166470;166471;166472;166473;166474;166475;166476;166477;166478;166479;166480;166481;166482;166483;166484;166485;166486;166487;166488;166489;166490;166491	225370;225371;225372;225373;225374;225375;225376;225377;225378;225379;225380;225381;225382;225383;225384;225385;225386;225387;225388;225389;225390;225391;225392;225393;225394;225395;225396;225397;225398;225399;225400;225401;225402;225403;225404;225405;225406;225407;225408;225409;225410;225411;225412;225413;225414;225415;225416;225417;225418;225419;225420;225421;225422;225423;225424;225425;225426;225427;225428	225388			59	
IVLDSDAAEYGGHQR	0	Unmodified	1629.7747	0.7746981	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		6	3					3		2	2	3	5	38.397	34.955	2;3	2.7425E-15	29783	160511_QHF_FH_JSI12i_2	135.37	131.13			1.1042	1.0587	32.748	10	2	Median	1.1511	0.99301	NaN	1	0	Median	1.1567	1.3214	38.963	2	1	Median	1.0701	1.0085	4.4494	3	0	Plateau	1.1152	1.167	43.884	4	1	Median	1303800000	629520000	674290000	182990000	88379000	94606000	226330000	135530000	90798000	478310000	219880000	258420000	416180000	185720000	230460000	26620	2216	25214	166492;166493;166494;166495;166496;166497;166498;166499;166500;166501;166502;166503	225429;225430;225431;225432;225433;225434;225435;225436;225437;225438;225439;225440;225441;225442;225443;225444;225445;225446	225432			18	
IVLEDGTLHVTEGSGR	0	Unmodified	1681.8635	0.8635131	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		6						2		2	2	2	2	53.069	49.581	2;3	4.2716E-15	42571	160511_QHF_FH_JSI12i_2	193.23	179.64			0.95617	1.0201	12.721	8	1	Median	1.0406	0.87893	13.02	2	1	Median	0.83379	0.99768	8.9808	2	0	Median	1.1583	1.1641	8.0652	2	0	Median	0.92036	1.0201	4.7747	2	0	Median	764730000	392140000	372580000	284480000	129730000	154750000	41868000	25670000	16198000	61866000	30568000	31298000	376520000	206180000	170340000	26621	2739	25215	166504;166505;166506;166507;166508;166509;166510;166511	225447;225448;225449;225450;225451;225452;225453;225454;225455;225456;225457;225458;225459;225460;225461	225450			15	
IVLFDTLLEEYSVLNK	1	Unmodified	1895.0292	0.029181449	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	1	2	2	100.13	95.373	2;3	2.0115E-19	90939	160511_QHF_FH_JSI10i_2	215.85	183.33			1.0107	1.0224	51.232	6	3	Median	1.2022	1.0205	NaN	1	0	Median	0.84961	1.0244	NaN	1	1	Median	1.0217	1.0214	94.308	2	0	Median	1.2266	1.3087	58.426	2	2	Median	591240000	312870000	278370000	95359000	47399000	47960000	53351000	31766000	21585000	246090000	141050000	105040000	196440000	92651000	103790000	26622	575	25216	166512;166513;166514;166515;166516;166517	225462;225463;225464;225465;225466	225464			5	
IVLFGTSALIPEVFTYFFK	1	Unmodified	2191.1969	0.19691548	3104	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			102.85	95.392	2;3	1.045E-156	57427	160513_QHF_FH_JSI10Kac_6	278.46	247.23			1.0246	1.1609	3.4201	3	0	Median	1.302	1.1331	NaN	1	0	Median	0.99302	1.1863	3.0564	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	739650000	331430000	408220000	323700000	133810000	189890000	415940000	197620000	218330000	0	0	0	0	0	0	26623	3104	25217	166518;166519;166520;166521	225467;225468;225469;225470;225471;225472;225473	225472			7	
IVLGGTTVHNTK	1	Unmodified	1238.6983	0.69828568	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	3	2	22.945	22.512	2;3	4.6231E-05	18485	160511_QHF_FH_JSI12i_3	82.543	72.491			1.1229	1.1251	47.287	6	2	Median	3.5499	2.8733	NaN	1	0	Median	0.75444	0.86241	NaN	1	0	Median	1.098	1.0188	42.523	2	2	Median	1.1229	1.1251	7.0689	2	0	Median	656500000	327000000	329500000	82719000	22465000	60254000	99721000	60369000	39352000	201910000	102760000	99153000	272150000	141410000	130740000	26624	4967	25218	166522;166523;166524;166525;166526;166527;166528	225474;225475;225476;225477;225478;225479;225480;225481;225482;225483	225483			10	
IVLHPDTEHSK	1	Unmodified	1274.6619	0.66190017	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	14.286	14.125	2;3;4	0.00045118	10665	160511_QHF_FH_JSI12i_3	48.044	41.312			0.88401	0.84448	7.1088	4	0	Median	1.0824	0.94844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88401	0.8164	0.90374	2	0	Median	0.8611	0.86796	NaN	1	0	Median	276330000	164450000	111880000	31344000	16431000	14913000	0	0	0	158600000	98063000	60535000	86385000	49957000	36428000	26625	5058	25219	166529;166530;166531;166532;166533	225484;225485;225486;225487;225488	225487			3	
IVLHSLDLR	0	Unmodified	1064.6342	0.63422886	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	51.279	50.366	3	1.1727E-06	42855	160511_QHF_FH_JSI12i_3	101.9	84.384			0.90826	1.0055	22.321	8	2	Median	1.6754	1.3637	9.4678	2	0	Median	0.82657	1.004	14.756	2	0	Median	0.80471	0.79767	7.8265	2	1	Median	0.96909	1.0065	14.705	2	1	Median	691800000	361060000	330740000	76904000	32561000	44343000	121770000	59128000	62645000	214970000	120390000	94586000	278150000	148980000	129170000	26626	5108	25220	166534;166535;166536;166537;166538;166539;166540;166541	225489;225490;225491;225492;225493;225494;225495;225496;225497;225498;225499;225500;225501	225501			13	
IVLLDSSLEYK	1	Unmodified	1278.7071	0.70711903	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							2	2	3	2	72.08	71.57	2	4.5465E-08	62744	160511_QHF_FH_JSI11i_2	126.31	102.09			0.87231	0.91444	21.043	9	2	Median	1.0671	0.89294	3.364	2	0	Median	0.79006	0.9517	4.2616	2	0	Median	0.82172	0.81781	2.4542	3	1	Median	1.2243	1.2429	35.593	2	1	Median	1851700000	973540000	878200000	318750000	152550000	166200000	688050000	395130000	292910000	559200000	302740000	256460000	285750000	123120000	162630000	26627	1655	25221	166542;166543;166544;166545;166546;166547;166548;166549;166550	225502;225503;225504;225505;225506;225507;225508;225509;225510;225511	225509			10	
IVLLDSSLEYKK	2	Unmodified	1406.8021	0.80208205	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	2	2	3	4	61.457	59.675	2;3	5.1274E-06	51331	160511_QHF_FH_JSI12i_2	94.191	85.887			1.0332	1.0724	24.156	10	2	Median	0.96249	0.80518	3.1355	2	0	Median	0.96039	1.1498	15.938	2	0	Median	1.3172	1.3097	35.669	3	1	Plateau	1.0322	1.1195	20.312	3	1	Median	1526300000	695310000	830980000	159900000	86911000	72989000	218330000	113860000	104480000	502650000	232310000	270340000	645410000	262240000	383170000	26628	1655	25222	166551;166552;166553;166554;166555;166556;166557;166558;166559;166560;166561	225512;225513;225514;225515;225516;225517;225518;225519;225520;225521;225522;225523;225524;225525;225526;225527;225528	225515			16	
IVLLMAYSGK	1	Oxidation (M)	1109.6155	0.61546725	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.6	0.49								2	3	1		1	3	66.913	56.764	2	0.00071226	30723	160513_QHF_FH_JSI11Kac_6	85.731	60.808			1.2624	1.367	33.806	5	2	Median	2.2969	1.9523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89402	0.87313	NaN	1	0	Median	0.88765	0.95596	25.702	3	2	Plateau	86517000	47040000	39477000	8777100	2881200	5895900	0	0	0	26444000	15750000	10693000	51296000	28408000	22888000	26629	5694	25223	166562;166563;166564;166565;166566	225529;225530;225531;225532;225533;225534;225535	225531		2733	7	
IVLLMAYSGK	1	Unmodified	1093.6206	0.62055263	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	76.723	67.6	2	3.4277E-06	36875	160513_QHF_FH_JSI11Kac_6	118.33	75.42			0.88888	0.92706	27.585	3	0	Median	1.4378	1.2066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73502	0.69511	NaN	1	0	Median	0.88888	0.92706	NaN	1	0	Median	433220000	213970000	219250000	172370000	61719000	110650000	0	0	0	224520000	130770000	93752000	36328000	21480000	14847000	26630	5694	25223	166567;166568;166569	225536;225537;225538	225536			2	
IVLLSANSIR	0	Unmodified	1084.6604	0.66044361	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.5	6.02			2					1	3	3	2	1		65.557	58.909	2	0.0071102	32374	160513_QHF_FH_JSI10Kac_6	59.597	26.756			1.1233	1.043	15.97	6	0	Median	1.3621	1.1065	10.909	3	0	Plateau	0.9935	1.151	22.296	2	0	Median	0.8965	0.86597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148360000	67181000	81174000	54906000	21597000	33309000	74497000	35662000	38834000	18953000	9922200	9030500	0	0	0	26631	641	25224	166570;166571;166572;166573;166574;166575	225539;225540;225541;225542;225543	225543			5	
IVLNGIDLK	1	Unmodified	983.60153	0.60153174	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	66.329	65.523	2	0.0084411	57667	160511_QHF_FH_JSI9i_2	52.255	1.6232			0.99214	1.0246	6.786	5	0	Median	1.2679	1.1035	NaN	1	0	Median	0.80609	0.99006	NaN	1	0	Median	1.0007	0.98001	6.2927	2	0	Median	0.99214	1.0903	NaN	1	0	Median	177090000	104270000	72817000	31798000	17830000	13968000	31375000	20254000	11121000	80431000	47227000	33204000	33487000	18963000	14524000	26632	274	25225	166576;166577;166578;166579;166580	225544;225545;225546;225547	225545			4	
IVLPGNFLYCTFYGRPYK	1	Unmodified	2207.1238	0.12376731	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			88.718	82.998	3	4.5309E-17	46919	160513_QHF_FH_JSI10Kac_6	140.02	96.72			1.0066	1.2062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0066	1.2062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	512030000	270150000	241880000	0	0	0	512030000	270150000	241880000	0	0	0	0	0	0	26633	3586	25226	166581	225548;225549	225549			2	
IVLQIDNAR	0	Unmodified	1040.5978	0.59784335	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.39	4	4	4				2	2	3	4	5	5	5	49.518	45.272	2	4.4117E-06	39515	160511_QHF_FH_JSI9i_2	119.41	73.689			1.0897	1.1275	11.089	19	0	Median	1.261	1.0614	8.7275	4	0	Median	0.90622	1.0881	7.0314	5	0	Median	1.1659	1.1469	6.8375	5	0	Median	1.0876	1.1593	18.687	5	0	Median	20501000000	9996100000	10505000000	3557200000	1683800000	1873400000	5139100000	2656700000	2482400000	5777000000	2738800000	3038100000	6027600000	2916800000	3110900000	26634	842	25227	166582;166583;166584;166585;166586;166587;166588;166589;166590;166591;166592;166593;166594;166595;166596;166597;166598;166599;166600	225550;225551;225552;225553;225554;225555;225556;225557;225558;225559;225560;225561;225562;225563;225564;225565;225566;225567;225568;225569;225570;225571;225572;225573	225567			24	
IVLQKYHTINGHNAEVR	1	Acetyl (K)	2033.0807	0.080656943	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	49.699	40.424	3;4	3.4305E-05	22249	160513_QHF_FH_JSI10Kac_6	80.975	69.93			0.58161	0.60982	122.13	4	1	Median	NaN	NaN	NaN	0	0	Median	1.3156	1.5385	7.177	2	0	Median	0.26762	0.25429	NaN	1	0	Median	0.1323	0.14602	NaN	1	1	Median	139580000	88323000	51260000	0	0	0	71422000	33933000	37489000	48809000	36718000	12092000	19351000	17673000	1678400	26635	1212	25228	166601;166602;166603;166604;166605	225574;225575;225576;225577;225578;225579	225579	1090		6	
IVLQNGAHEVFNHR	0	Unmodified	1632.8485	0.84847216	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			36.235	34.783	3	7.6885E-07	28297	160511_QHF_FH_JSI9i_3	102.52	68.134			1.2847	1.0274	17.405	3	3	Median	1.4102	1.1395	14.649	2	2	Median	0.77709	0.89436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162480000	87263000	75217000	120990000	63141000	57846000	41493000	24122000	17371000	0	0	0	0	0	0	26636	2266	25229	166606;166607;166608	225580;225581;225582	225581			3	
IVLQVFHSLLK	1	Unmodified	1295.7965	0.79654316	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	3	3	1	82.413	78.659	3	3.8756E-10	39757	160513_QHF_FH_JSI9Kac_6	125.97	109.59			0.74752	0.73753	60.629	7	5	Median	1.0211	0.85534	54.299	2	1	Median	1.3831	1.5932	74.185	2	1	Median	0.56728	0.55039	41.392	2	2	Median	0.73784	0.71648	NaN	1	1	Median	367830000	151300000	216530000	171260000	62587000	108680000	116960000	41421000	75537000	34595000	22360000	12234000	45012000	24934000	20078000	26637	5618	25230	166609;166610;166611;166612;166613;166614;166615;166616;166617;166618	225583;225584;225585;225586;225587;225588;225589;225590;225591;225592;225593	225590			11	
IVLRGDNPK	1	Unmodified	1010.5873	0.58727866	1928	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		15.296	14.633	2;3	0.0030929	11648	160511_QHF_FH_JSI9i_3	80.438	48.504			1.1442	1.1862	10.422	6	0	Median	1.4741	1.1862	2.1939	2	0	Median	1.1362	1.3186	7.5417	2	0	Median	1.1159	1.0609	2.9321	2	0	Median	NaN	NaN	NaN	0	0	Median	1963400000	936240000	1027200000	600770000	290450000	310320000	523990000	237590000	286400000	838650000	408200000	430450000	0	0	0	26638	1928	25231	166619;166620;166621;166622;166623;166624	225594;225595;225596;225597;225598;225599;225600	225600			7	
IVLTNPVCTEVGEK	1	Unmodified	1557.8072	0.80724378	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	60.942	60.164	2	8.0103E-15	54771	160511_QHF_FH_JSI12i_1	162.68	148.48			1.1226	1.0988	26.491	8	3	Median	1.1991	1.0142	6.0822	2	1	Median	0.84418	1.0274	17.53	2	0	Median	0.94652	0.92932	28.949	2	1	Median	1.4918	1.6078	8.5771	2	1	Median	1049700000	476490000	573220000	148200000	68953000	79248000	255360000	105310000	150050000	355220000	169670000	185550000	290930000	132550000	158380000	26639	1508	25232	166625;166626;166627;166628;166629;166630;166631;166632	225601;225602;225603;225604;225605;225606;225607;225608;225609;225610;225611;225612;225613;225614	225607			14	
IVLVQSVR	0	Unmodified	912.57565	0.57565135	244	O15085	ARHGEF11	Rho guanine nucleotide exchange factor 11	yes	yes	0	0	0	0	By matching	By MS/MS			15.3	0.943							1		2	1	2			55.853	46.442	2	0.043731	23935	160513_QHF_FH_JSI10Kac_4	45.718	0			0.88477	0.98309	4.0485	3	0	Median	1.0758	0.93215	NaN	1	0	Median	0.85488	0.99608	1.8563	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	354750000	171990000	182750000	10562000	4534100	6027800	344180000	167460000	176720000	0	0	0	0	0	0	26640	244	25233	166633;166634;166635	225615;225616	225615			2	
IVLWHESTFAEELK	1	Unmodified	1700.8774	0.87737225	5819				yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0.707	2	4	2							3		2	3	95.232	94.912	2;3	0.00085653	84697	160511_QHF_FH_JSI12i_1	85.731	12.009	+		0.98907	0.98494	89.637	8	1	Median	1.1127	0.95656	13.507	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2699	1.1798	21.395	2	0	Median	0.88359	1.0145	144.88	3	1	Plateau	401520000	214880000	186640000	115300000	54292000	61011000	0	0	0	141240000	62743000	78496000	144980000	97848000	47132000	26641	5819	25234	166636;166637;166638;166639;166640;166641;166642;166643	225617;225618;225619;225620;225621;225622	225620			5	
IVLYQTDASLTPWTVR	0	Unmodified	1861.9938	0.993799	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.715	89.844	2	0.00031302	77586	160511_QHF_FH_JSI12i_2	84.289	68.75			1.13	1.281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.13	1.281	NaN	1	1	Median	9644800	5957100	3687700	0	0	0	0	0	0	0	0	0	9644800	5957100	3687700	26642	3452	25235	166644	225623	225623			1	
IVMEAAAK	1	Unmodified	831.45242	0.45242467	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			20.667	19.847	2	0.045987	17015	160511_QHF_FH_JSI10i_2	38.16	14.188			0.76504	0.9422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76504	0.9422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41744000	20955000	20789000	0	0	0	41744000	20955000	20789000	0	0	0	0	0	0	26643	1745	25236	166645	225624	225624			1	
IVMEAIQQASVAK	1	Unmodified	1386.7541	0.754086	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	53.373	52.556	2	5.7864E-07	44924	160511_QHF_FH_JSI12i_2	133.42	105.56			1.2935	1.2761	31.731	8	2	Median	1.1058	0.91348	44.972	2	1	Median	1.103	1.313	52.819	2	1	Median	1.3408	1.3147	1.9067	2	0	Median	1.1727	1.2869	17.868	2	0	Median	548190000	223310000	324890000	95496000	38646000	56850000	152850000	66969000	85880000	183890000	70748000	113140000	115960000	46945000	69015000	26644	3709	25237	166646;166647;166648;166649;166650;166651;166652;166653	225625;225626;225627;225628;225629;225630;225631;225632	225625			7	
IVMFTIDIGEAPK	1	Unmodified	1432.7636	0.76358805	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.86	7.06	1	3							3	1	2	4		89.869	84.981	2;3	1.039E-24	45296	160513_QHF_FH_JSI10Kac_6	162.36	147.1			0.83076	0.78908	15.692	5	3	Median	0.89907	0.78908	NaN	1	0	Median	0.66575	0.76536	NaN	1	0	Median	0.95051	0.90852	21.723	3	3	Plateau	NaN	NaN	NaN	0	0	Median	441430000	230570000	210860000	79630000	46187000	33443000	186620000	92543000	94075000	175190000	91841000	83345000	0	0	0	26645	2655	25238	166654;166655;166656;166657;166658;166659;166660	225633;225634;225635;225636;225637;225638;225639;225640	225640			8	
IVNDDQSFYADIYMEDGLIK	1	Unmodified	2348.0882	0.088229245	2739	Q16555;Q14195	DPYSL2;DPYSL3	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3	yes	no	0	0	0	0		By MS/MS			1	0	1										1			97.568	97.581	2	2.4009E-06	88441	160511_QHF_FH_JSI10i_1	102.28	94.907			1.2142	1.2762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2142	1.2762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5360100	3606100	1754100	0	0	0	5360100	3606100	1754100	0	0	0	0	0	0	26646	2739	25239	166661	225641	225641			1	
IVNHPTMLQDPDVR	0	Unmodified	1633.8246	0.82462518	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	39.375	38.708	3	8.7285E-05	33933	160511_QHF_FH_JSI11i_3	98.439	93.124			1.0006	0.99488	28.323	9	8	Median	1.0188	0.87829	NaN	1	1	Median	0.70586	0.87913	NaN	1	0	Median	1.0006	0.99488	27.787	3	3	Median	1.0597	1.1564	29.898	4	4	Median	959350000	475030000	484320000	58976000	28595000	30381000	88121000	41999000	46121000	399910000	218150000	181760000	412340000	186290000	226060000	26647	2448	25240	166662;166663;166664;166665;166666;166667;166668;166669;166670	225642;225643;225644;225645;225646;225647;225648;225649;225650;225651	225642			10	
IVNHWASPELR	0	Unmodified	1320.6939	0.693869	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			3							1	2			39.788	38.287	2;3	2.1497E-05	31982	160511_QHF_FH_JSI10i_3	76.522	53.147			1.2866	1.2328	8.005	2	0	Median	1.4541	1.165	NaN	1	0	Median	1.1383	1.3046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132960000	56889000	76074000	58866000	22346000	36520000	74098000	34543000	39555000	0	0	0	0	0	0	26648	235	25241	166671;166672;166673	225652;225653;225654	225653			3	
IVNLGSSK	1	Unmodified	816.47052	0.47051757	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	16.85	16.305	2	0.0056357	13178	160511_QHF_FH_JSI11i_2	73.248	44.099			1.4119	1.4596	58.092	9	7	Median	1.6626	1.3804	60.459	2	1	Median	1.031	1.2495	86.059	2	1	Median	1.3114	1.3324	78.026	3	3	Median	1.5689	1.6806	19.934	2	2	Median	1864000000	971850000	892110000	326980000	132490000	194490000	464190000	246150000	218040000	770980000	432980000	338000000	301810000	160230000	141580000	26649	3246	25242	166674;166675;166676;166677;166678;166679;166680;166681;166682	225655;225656;225657;225658;225659;225660;225661;225662	225660			8	
IVNQPSSLFGSK	1	Unmodified	1275.6823	0.68230126	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							2	3	3	3	48.718	47.948	2	2.4167E-12	42350	160511_QHF_FH_JSI11i_3	155.15	111.9			1.2647	1.197	24.015	11	2	Median	1.2352	1.0294	15.893	2	0	Median	1.3323	1.5043	36.492	3	1	Median	1.2647	1.2567	16.503	3	0	Plateau	1.1942	1.2229	26.342	3	1	Median	1710600000	795100000	915510000	225020000	80040000	144980000	383390000	188590000	194810000	568000000	268390000	299610000	534190000	258080000	276110000	26650	3290	25243	166683;166684;166685;166686;166687;166688;166689;166690;166691;166692;166693	225663;225664;225665;225666;225667;225668;225669;225670;225671;225672	225664			10	
IVNQPSSLFGSKSASSK	2	Acetyl (K)	1777.921	0.92102798	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	0.7						2	6	6		1	4	4	5	63.912	53.318	2;3	1.0078E-07	28934	160513_QHF_FH_JSI10Kac_4	113.33	107.79			0.63185	0.68883	51.262	12	0	Median	1.4595	1.2402	NaN	1	0	Median	1.2232	1.4696	9.0732	4	0	Median	0.53497	0.52233	6.915	3	0	Median	0.60398	0.65589	26.128	4	0	Median	154420000	89160000	65255000	8585200	3586200	4999000	52279000	22974000	29305000	50114000	33258000	16856000	43437000	29342000	14095000	26651	3290	25244	166694;166695;166696;166697;166698;166699;166700;166701;166702;166703;166704;166705;166706;166707	225673;225674;225675;225676;225677;225678;225679;225680;225681;225682;225683;225684;225685;225686	225676	2824		14	
IVNSAQTGSFK	1	Unmodified	1150.5982	0.59823728	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.35	5	6	6	4				3	1		7	4	5	4	21.318	18.923	2	1.328E-09	16648	160511_QHF_FH_JSI12i_2	157.66	128.5			0.86762	0.92149	57.438	20	12	Median	1.0873	0.91965	58.732	7	5	Median	0.6794	0.80692	67.953	4	3	Median	0.87648	0.85487	43.651	5	2	Median	0.88344	0.93495	79.988	4	2	Median	6726200000	3474200000	3252000000	1836700000	893580000	943110000	1517700000	846230000	671470000	1575600000	822410000	753160000	1796200000	911980000	884220000	26652	592	25245	166708;166709;166710;166711;166712;166713;166714;166715;166716;166717;166718;166719;166720;166721;166722;166723;166724;166725;166726;166727	225687;225688;225689;225690;225691;225692;225693;225694;225695;225696;225697;225698;225699;225700;225701;225702;225703;225704;225705;225706;225707;225708;225709;225710;225711;225712	225691			26	
IVNTESFVMPWQAVQDVK	1	Unmodified	2090.0507	0.050661947	406	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.57	100.42	3	0.018607	88120	160511_QHF_FH_JSI11i_2	33.405	16.911			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26653	406	25246	166728	225713	225713			1	
IVNTPFQVLMNSEK	1	Unmodified	1618.8389	0.83887826	3841	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							2	3	3	2	85.826	85.256	2;3	1.6432E-05	71306	160511_QHF_FH_JSI10i_3	74.769	61.568			0.81565	0.82075	17.763	9	1	Median	1.2703	1.0523	4.7615	2	0	Median	0.63654	0.75021	8.4719	2	0	Median	0.75485	0.72064	15.315	3	1	Median	0.8213	0.83334	2.1515	2	0	Median	588160000	321450000	266710000	39225000	20967000	18258000	71913000	37760000	34154000	226530000	124840000	101690000	250500000	137880000	112610000	26654	3841	25247	166729;166730;166731;166732;166733;166734;166735;166736;166737;166738	225714;225715;225716;225717;225718;225719;225720;225721;225722;225723	225717			8	
IVNTPQGCLWYK	1	Unmodified	1477.7388	0.73877028	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	57.398	56.473	2	1.0527E-05	48905	160511_QHF_FH_JSI11i_2	118.18	92.74			1.4077	1.4671	44.24	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.089	1.073	NaN	1	0	Median	1.8196	2.006	NaN	1	1	Median	119440000	60066000	59374000	0	0	0	0	0	0	82518000	47344000	35174000	36922000	12722000	24200000	26655	387	25248	166739;166740;166741	225724;225725;225726	225726			3	
IVPAHVPTPIQPTFGGATHSAFGLK	1	Unmodified	2542.3696	0.36962832	35	A8CG34;A6NF01	POM121C;POM121B	Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.459	76.692	4	3.767E-11	64489	160511_QHF_FH_JSI10i_3	88.239	76.451			1.088	1.0283	22.013	4	0	Median	1.3112	1.073	NaN	1	0	Median	1.1004	1.3341	NaN	1	0	Median	1.0758	0.98549	NaN	1	0	Median	0.78249	0.78337	NaN	1	0	Median	417180000	207950000	209230000	87915000	39070000	48846000	86182000	38005000	48177000	151480000	76732000	74744000	91610000	54144000	37466000	26656	35	25249	166742;166743;166744;166745	225727;225728;225729;225730;225731;225732;225733	225728			7	
IVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEK	1	Unmodified	4080.0435	0.043534244	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.13	97.411	4	9.6711E-32	57641	160513_QHF_FH_JSI10Kac_6	126.66	114.16			0.79664	0.96248	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79664	0.96248	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	273490000	151430000	122060000	0	0	0	273490000	151430000	122060000	0	0	0	0	0	0	26657	120	25250	166746	225734;225735	225735			2	
IVPDEIEEIK	1	Unmodified	1183.6336	0.63361973	4931	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.524	56.873	2	0.037206	51822	160511_QHF_FH_JSI12i_1	38.303	24.096			0.32864	0.3516	34.553	4	0	Median	0.21811	0.18383	NaN	1	0	Median	0.28163	0.33105	NaN	1	0	Median	0.38973	0.37343	NaN	1	0	Median	0.38351	0.38495	NaN	1	0	Median	124480000	93830000	30648000	32806000	27767000	5038600	28345000	21579000	6765900	35740000	25188000	10552000	27587000	19295000	8291800	26658	4931	25251	166747;166748;166749;166750	225736;225737	225737			2	
IVPEGEWGQFMDALREPLPATLR	0	Unmodified	2624.3421	0.34209294	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		101.58	101.47	3	4.9512E-11	82333	160511_QHF_FH_JSI9i_3	104.18	87.252			0.92175	1.0604	17.049	3	0	Median	1.4222	1.153	NaN	1	0	Median	0.92175	1.0604	NaN	1	0	Median	0.90494	0.83052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1055200000	533000000	522250000	143590000	57978000	85615000	565920000	310060000	255870000	345730000	164970000	180770000	0	0	0	26659	2282	25252	166751;166752;166753	225738	225738			1	
IVPELKSK	2	Unmodified	912.56442	0.56441796	5655	Q9Y5B0	CTDP1	RNA polymerase II subunit A C-terminal domain phosphatase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.119	21.822	3	0.028045	17583	160511_QHF_FH_JSI9i_3	39.022	1.8306			5.2072	4.2375	NaN	1	1	Median	5.2072	4.2375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77114000	22630000	54485000	77114000	22630000	54485000	0	0	0	0	0	0	0	0	0	26660	5655	25253	166754	225739	225739			1	
IVPEWQDYDQEIK	1	Unmodified	1661.7937	0.7937022	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								2	2	2	3	69.725	69.032	2;3	3.8309E-11	62773	160511_QHF_FH_JSI11i_1	154.24	144.59			1.002	0.93224	23.195	9	3	Median	1.3722	1.1331	28.969	2	0	Median	0.74893	0.90066	4.8735	2	1	Median	0.9712	0.92932	6.4266	2	0	Median	1.0506	1.0685	36.152	3	2	Median	1068800000	593960000	474860000	217990000	106530000	111460000	232680000	133450000	99223000	356800000	203040000	153760000	261350000	150930000	110420000	26661	5135	25254	166755;166756;166757;166758;166759;166760;166761;166762;166763	225740;225741;225742;225743;225744;225745;225746;225747;225748;225749;225750;225751;225752	225741			12	
IVPGQFLAVDPK	1	Unmodified	1282.7285	0.72852317	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	73.358	72.771	2	0.012908	62964	160511_QHF_FH_JSI12i_3	44.863	32.248			0.99086	0.96895	13.265	7	0	Median	1.0683	0.91024	NaN	1	0	Median	0.82124	1.006	NaN	1	0	Median	0.99086	0.96895	14.829	3	0	Median	0.85204	0.89969	18.92	2	0	Median	1154800000	556520000	598250000	147370000	69081000	78287000	223840000	114890000	108950000	462100000	227230000	234870000	321470000	145320000	176140000	26662	2665	25255	166764;166765;166766;166767;166768;166769;166770	225753;225754;225755;225756;225757	225757			5	
IVPHICNLLGDPNSQVR	0	Unmodified	1931.0047	0.0047148075	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			69.814	68.342	3	0.0056505	57245	160511_QHF_FH_JSI10i_3	40.493	30.963			1.573	1.7888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.573	1.7888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35849000	17979000	17871000	0	0	0	35849000	17979000	17871000	0	0	0	0	0	0	26663	3266	25256	166771	225758	225758			1	
IVPNVLLEQGK	1	Unmodified	1208.7129	0.71287311	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.79	4	4	4				2	3		4	4	4	5	65.23	61.542	2	2.5842E-05	54547	160511_QHF_FH_JSI10i_2	100.02	90.106			0.95013	0.99876	21.629	17	5	Median	1.0934	0.93064	10.488	4	1	Median	0.87032	1.0607	5.9882	4	1	Median	0.9086	0.91144	31.915	4	1	Median	0.97636	1.0322	22.088	5	2	Median	5589500000	2886100000	2703300000	1173800000	584870000	588880000	1253400000	683690000	569730000	1548100000	838760000	709390000	1614100000	778790000	835340000	26664	517	25257	166772;166773;166774;166775;166776;166777;166778;166779;166780;166781;166782;166783;166784;166785;166786;166787;166788	225759;225760;225761;225762;225763;225764;225765;225766;225767;225768;225769;225770;225771;225772;225773;225774;225775;225776;225777;225778;225779;225780;225781;225782;225783;225784;225785;225786;225787;225788;225789;225790;225791;225792;225793;225794;225795	225793			37	
IVPSLLFNMQK	1	Unmodified	1288.7213	0.7213293	2504	Q14156	EFR3A	Protein EFR3 homolog A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		85.624	85.624	2	0.0014791	76350	160511_QHF_FH_JSI11i_3	76.064	34.085			7.9402	7.4423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.9402	7.4423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96252000	14189000	82064000	0	0	0	0	0	0	96252000	14189000	82064000	0	0	0	26665	2504	25258	166789	225796	225796			1	
IVPTDMNDQNLEEPSR	0	Unmodified	1856.8574	0.85744145	4754	Q9H6U8	ALG9	Alpha-1,2-mannosyltransferase ALG9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	49.519	48.892	2	1.958E-07	44424	160511_QHF_FH_JSI12i_1	137.59	117.83			1.418	1.1497	26.743	5	3	Median	1.418	1.1497	NaN	1	0	Median	0.6634	0.77357	NaN	1	1	Median	1.2112	1.1663	22.658	2	2	Median	1.4342	1.5223	NaN	1	0	Median	248820000	124420000	124400000	51629000	20905000	30724000	51485000	31326000	20159000	96247000	47831000	48416000	49462000	24358000	25104000	26666	4754	25259	166790;166791;166792;166793;166794	225797;225798;225799;225800;225801;225802;225803	225800			7	
IVPTVYEDK	1	Unmodified	1062.5597	0.55972651	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.2	4.92	1	3					1			2		1	2	40.548	37.69	2	0.00049206	33232	160511_QHF_FH_JSI9i_1	89.698	45.89			0.2257	0.23919	92.5	5	5	Median	0.55867	0.46683	126.85	2	2	Median	NaN	NaN	NaN	0	0	Median	0.21064	0.21532	NaN	1	1	Median	0.48058	0.52618	111.49	2	2	Median	1041700000	695990000	345670000	603520000	339260000	264270000	0	0	0	278540000	229550000	48996000	159590000	127180000	32406000	26667	3953	25260	166795;166796;166797;166798;166799	225804;225805;225806;225807;225808	225805			5	
IVPVEITISLLK	1	Unmodified	1323.8377	0.83773927	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		4							5	1	1	4	3	96.242	91.388	2	6.3033E-07	89138	160511_QHF_FH_JSI11i_2	105.98	64.946			0.77657	0.70541	17.691	5	5	Median	0.77657	0.66349	NaN	1	1	Median	0.51744	0.62053	NaN	1	1	Median	0.80862	0.79235	16.435	2	2	Median	0.81985	0.9188	NaN	1	1	Median	1296300000	734320000	561970000	101200000	43885000	57311000	153680000	99730000	53952000	599030000	339360000	259670000	442380000	251340000	191040000	26668	1342	25261	166800;166801;166802;166803;166804;166805;166806;166807;166808	225809;225810;225811;225812;225813;225814;225815;225816;225817	225814			9	
IVQAEGEAEAAK	1	Unmodified	1214.6143	0.61428128	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.66	9	8	4		2	3	1			7	7	6	7	17.914	15.149	2	3.8674E-12	13348	160511_QHF_FH_JSI12i_1	155	110.65			1.0771	1.0209	80.264	24	19	Median	1.1492	0.93272	80.499	7	6	Median	1.7792	1.9894	119.53	5	5	Median	1.1341	1.1232	78.971	5	4	Median	0.74055	0.78736	58.206	7	4	Median	18792000000	9762800000	9029600000	6802300000	3369200000	3433100000	4905800000	2687400000	2218500000	4637500000	2423500000	2214000000	2446700000	1282700000	1164000000	26669	4296	25262	166809;166810;166811;166812;166813;166814;166815;166816;166817;166818;166819;166820;166821;166822;166823;166824;166825;166826;166827;166828;166829;166830;166831;166832;166833;166834;166835	225818;225819;225820;225821;225822;225823;225824;225825;225826;225827;225828;225829;225830;225831;225832;225833;225834;225835;225836;225837;225838;225839;225840;225841;225842;225843;225844;225845;225846;225847;225848;225849;225850;225851;225852;225853;225854	225827			37	
IVQEKVFK	2	Acetyl (K)	1031.6015	0.60153174	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.342	36.902	2	0.045337	21877	160513_QHF_FH_JSI11Kac_4	49.097	35.719			0.37382	0.37269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37382	0.37269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8320800	6186500	2134300	0	0	0	0	0	0	8320800	6186500	2134300	0	0	0	26670	2082	25263	166836	225855	225855			1	
IVQELPQLLDAR	0	Unmodified	1393.7929	0.79291434	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	74.417	73.626	2	0.021929	63544	160511_QHF_FH_JSI12i_2	64.103	50.511			12.655	14.742	119.33	3	3	Plateau	1.953	1.594	NaN	1	1	Median	1.9615	2.3199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13.152	14.807	NaN	1	1	Median	230670000	52236000	178440000	21699000	7818600	13880000	58785000	20969000	37816000	0	0	0	150190000	23448000	126740000	26671	3122	25264	166837;166838;166839	225856;225857;225858	225856			3	
IVQKHPHTGDTK	2	Acetyl (K)	1401.7365	0.7364621	1732	P51397	DAP	Death-associated protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.416								6	21	5	14	4	4	10.149	2.303	2;3;4	2.5533E-15	3640	160513_QHF_FH_JSI11Kac_6	136.48	101.25			1.2893	0.67539	122.51	27	1	Plateau	2.3043	1.9549	9.4603	5	0	Median	1.4989	1.7827	39.658	14	0	Median	0.3618	0.35043	28.452	4	0	Median	0.36441	0.38889	213.25	4	1	Median	2145700000	1111700000	1034000000	257530000	87496000	170040000	832100000	295120000	536980000	638110000	452820000	185290000	417980000	276290000	141690000	26672	1732	25265	166840;166841;166842;166843;166844;166845;166846;166847;166848;166849;166850;166851;166852;166853;166854;166855;166856;166857;166858;166859;166860;166861;166862;166863;166864;166865;166866	225859;225860;225861;225862;225863;225864;225865;225866;225867;225868;225869;225870;225871;225872;225873;225874;225875;225876;225877;225878;225879;225880;225881;225882;225883;225884;225885;225886;225887;225888;225889;225890;225891;225892;225893;225894;225895;225896;225897;225898	225866	1748		40	
IVQKYGYTHLSTGDLLR	1	Acetyl (K)	2005.0633	0.063275544	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.613	65.257	3	5.6896E-07	35470	160513_QHF_FH_JSI11Kac_6	104.89	80.356			0.33897	0.33282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33897	0.33282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43028000	29958000	13070000	0	0	0	0	0	0	43028000	29958000	13070000	0	0	0	26673	776	25266	166867	225899	225899	402		1	
IVQLGGSNAQR	0	Unmodified	1141.6204	0.62036971	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	18.929	18.458	2	9.941E-05	15439	160511_QHF_FH_JSI11i_3	87.308	68.525			0.90413	0.91963	22.277	7	1	Median	1.0208	0.86874	NaN	1	0	Median	0.75439	0.8774	21.8	2	0	Median	1.075	1.0484	18.531	2	0	Median	0.88061	0.91664	41.884	2	1	Median	464080000	216130000	247950000	82466000	36807000	45659000	95440000	53418000	42023000	166880000	75949000	90935000	119290000	49959000	69335000	26674	2918	25267	166868;166869;166870;166871;166872;166873;166874	225900;225901;225902;225903;225904;225905;225906;225907;225908;225909;225910	225901			11	
IVQLLAGVADQTK	1	Unmodified	1354.782	0.78201531	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	66.669	65.853	2	0.00082195	56690	160511_QHF_FH_JSI12i_2	78.653	60.341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23052000	23052000	0	0	0	0	15435000	15435000	0	0	0	0	7616800	7616800	0	26675	562	25268	166875;166876	225911;225912	225911			2	
IVQLLGQNEVDYR	0	Unmodified	1545.8151	0.81510635	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	62.001	60.864	2	2.2394E-09	52999	160511_QHF_FH_JSI11i_2	107.06	68.699			0.98446	0.95967	1.7093	2	0	Median	1.1439	0.97134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84725	0.94814	NaN	1	0	Median	162740000	73889000	88854000	91576000	41081000	50494000	0	0	0	0	0	0	71168000	32808000	38360000	26676	4574	25269	166877;166878;166879	225913;225914;225915;225916	225916			3	
IVQMTEAEVR	0	Unmodified	1174.6016	0.6016081	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.9	3	4	1				1			3	2	3	1	33.018	32.146	2	1.5899E-05	28332	160511_QHF_FH_JSI9i_1	99.802	36.237			1.1945	1.3089	28.531	8	2	Median	1.615	1.331	35.056	3	1	Median	0.84928	1.0198	40.669	2	1	Median	1.3337	1.336	5.2498	2	0	Median	0.79485	0.89867	NaN	1	0	Median	3629200000	1689000000	1940200000	868340000	370480000	497860000	1140300000	593720000	546530000	1292600000	575650000	716930000	328030000	149150000	178880000	26677	1981	25270	166880;166881;166882;166883;166884;166885;166886;166887;166888	225917;225918;225919;225920;225921;225922;225923;225924;225925;225926;225927;225928	225924			12	
IVQMTEAEVR	0	Oxidation (M)	1190.5965	0.59652272	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				33.543	32.288	2	0.050965	28293	160511_QHF_FH_JSI9i_1	39.01	34.559			0.99234	0.82121	NaN	1	0	Median	0.99234	0.82121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141220000	63733000	77486000	141220000	63733000	77486000	0	0	0	0	0	0	0	0	0	26678	1981	25270	166889	225929	225929			1	
IVQNSNGYK	1	Unmodified	1021.5193	0.51925868	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.2	0.4	4	1								2	1	1	1	8.9924	8.6068	2	0.010885	6455	160511_QHF_FH_JSI9i_2	49.442	15.926			0.96644	0.78458	33.263	5	1	Median	0.99508	0.82955	7.8818	2	0	Median	0.53225	0.62204	NaN	1	0	Median	1.553	1.5113	NaN	1	1	Median	0.73495	0.77182	NaN	1	0	Median	403370000	226790000	176580000	102700000	50367000	52333000	122070000	86101000	35972000	74404000	33237000	41167000	104190000	57085000	47106000	26679	440	25271	166890;166891;166892;166893;166894	225930;225931;225932	225932			3	
IVQQIAILMGCAILPHLR	0	Unmodified	2045.1642	0.16419234	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	1	2		93.83	85.354	3	4.5317E-12	50072	160513_QHF_FH_JSI10Kac_6	127.75	113.92			1.2748	1.5286	90.079	5	4	Median	1.2738	1.0941	92.069	2	2	Median	1.2748	1.5286	NaN	1	0	Median	1.1661	1.1249	152.15	2	2	Median	NaN	NaN	NaN	0	0	Median	584860000	273120000	311740000	114330000	51439000	62891000	261770000	133770000	127990000	208760000	87907000	120850000	0	0	0	26680	542	25272	166895;166896;166897;166898;166899	225933;225934;225935;225936;225937;225938	225938			6	
IVQQWNLQDNDDDQLFYTK	1	Unmodified	2382.1128	0.11280451	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.145	79.987	3	0.0097965	72597	160511_QHF_FH_JSI10i_1	38.878	25.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26681	140	25273	166900	225939	225939			1	
IVQSLLSLLK	1	Unmodified	1112.7169	0.71689585	3347	Q86VV8	RTTN	Rotatin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.233	93.21	2	0.00089079	80831	160511_QHF_FH_JSI12i_3	74.92	57.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26682	3347	25274	166901	225940	225940			1	
IVQTYHVNMAGTNPYTTITPQEINGK	1	Unmodified	2889.4331	0.43309279	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	69.374	68.815	3;4	5.9637E-32	60953	160511_QHF_FH_JSI10i_2	151.42	145.8			1.1746	1.1765	45.818	10	2	Median	0.61134	0.51754	NaN	1	0	Median	0.49587	0.60949	3.2064	2	1	Median	1.7002	1.5892	23.893	4	1	Median	1.2275	1.2421	8.4239	3	0	Median	840530000	387730000	452800000	76076000	43362000	32714000	106600000	73726000	32879000	380740000	146380000	234360000	277110000	124260000	152850000	26683	1021	25275	166902;166903;166904;166905;166906;166907;166908;166909;166910;166911	225941;225942;225943;225944;225945;225946;225947;225948;225949;225950;225951;225952;225953	225947			13	
IVQTYHVNMAGTNPYTTITPQEINGKWDHVR	1	Acetyl (K)	3624.7784	0.77835027	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.31	71.996	4	0.00023008	39637	160513_QHF_FH_JSI11Kac_6	64.096	54.385			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20440000	20440000	0	0	0	0	0	0	0	20440000	20440000	0	0	0	0	26684	1021	25276	166912	225954	225954	834		1	
IVQVALNGLENILR	0	Unmodified	1550.9144	0.91442646	439;1767;254	O15131;P52294;O60684	KPNA5;KPNA1;KPNA6	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							1		3	2	100.74	100.69	2;3	3.5342E-06	87256	160511_QHF_FH_JSI12i_3	135.99	112			0.60689	0.61402	96.725	3	3	Median	0.55442	0.47118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60689	0.61402	NaN	1	1	Median	2.7594	2.8276	NaN	1	1	Median	595790000	375120000	220670000	167200000	125700000	41501000	0	0	0	360600000	231810000	128790000	67995000	17612000	50383000	26685	254;1767;439	25277	166913;166914;166915;166916;166917;166918	225955;225956;225957;225958;225959;225960	225959			6	
IVQVAQAMSLTEDVLAAALADHLPEDK	1	Unmodified	2847.4688	0.4688096	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	103.18	103.14	3	1.0639E-24	89919	160511_QHF_FH_JSI12i_3	116.72	113.94			0.73405	0.68573	44.814	2	1	Median	0.55716	0.49949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96711	0.94139	NaN	1	0	Median	80178000	33583000	46595000	36232000	17512000	18720000	0	0	0	0	0	0	43946000	16071000	27875000	26686	4234	25278	166919;166920;166921	225961;225962;225963;225964	225964			4	
IVRGDQPAASGDSDDDEPPPLPR	0	Unmodified	2403.1302	0.13024549	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.833	2	2	3							3	2	1	1	40.344	39.739	3	5.4767E-19	32337	160511_QHF_FH_JSI9i_3	118.35	110.16			0.93989	1.0749	16.818	5	0	Median	1.2412	1.0436	NaN	1	0	Median	0.92486	1.0982	3.0254	2	0	Median	1.505	1.3525	NaN	1	0	Median	0.80969	0.84543	NaN	1	0	Median	395510000	215510000	179990000	67506000	30693000	36813000	173810000	87110000	86703000	34043000	16013000	18030000	120150000	81699000	38448000	26687	115	25279	166922;166923;166924;166925;166926;166927;166928	225965;225966;225967;225968;225969;225970;225971;225972;225973;225974;225975;225976;225977;225978;225979	225973			15	
IVSAQSLAEDDVE	0	Unmodified	1374.6515	0.65145464	2662	Q15388	TOMM20	Mitochondrial import receptor subunit TOM20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	5.16	4			3	3					1	3	3	3	60.721	54.776	2	4.8077E-05	48882	160511_QHF_FH_JSI9i_1	134.68	126.75			1.0336	1.0603	12.621	10	0	Median	1.0473	0.86642	NaN	1	0	Median	0.80132	0.96844	12.359	3	0	Plateau	1.2836	1.186	16.514	3	0	Median	1.0247	1.0653	2.2114	3	0	Median	2464900000	1287100000	1177700000	559070000	300330000	258740000	661170000	338130000	323040000	679440000	328420000	351030000	565170000	320230000	244940000	26688	2662	25280	166929;166930;166931;166932;166933;166934;166935;166936;166937;166938	225980;225981;225982;225983;225984;225985;225986;225987;225988;225989;225990;225991;225992;225993;225994;225995;225996	225990			17	
IVSGEAESVEVTPENLQDFVGK	1	Unmodified	2346.1591	0.159086	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	3	1	1	85.091	84.697	2;3	5.0344E-10	76886	160511_QHF_FH_JSI10i_1	101.62	90.519			1.3121	1.2074	15.281	5	3	Median	1.321	1.1294	NaN	1	0	Median	0.92601	1.0825	15.444	2	2	Median	1.3121	1.2514	NaN	1	0	Median	1.4161	1.4763	NaN	1	1	Median	203860000	99448000	104410000	32013000	18458000	13555000	95369000	48098000	47272000	37950000	16050000	21900000	38525000	16843000	21682000	26689	1459	25281	166939;166940;166941;166942;166943;166944	225997;225998;225999;226000;226001;226002;226003;226004;226005	226003			9	
IVSGEAESVEVTPENLQDFVGKPVFTVER	1	Unmodified	3174.6085	0.6084742	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							2	3	7	4	99.424	99.339	3;4	4.2315E-37	85965	160511_QHF_FH_JSI12i_3	156.73	134.8			0.83576	0.85762	12.078	16	3	Median	1.0125	0.86538	16.392	2	0	Median	0.6675	0.82127	3.3558	3	0	Plateau	0.9006	0.88485	9.2261	7	2	Median	0.71568	0.75796	19.948	4	1	Median	1035000000	566510000	468510000	123680000	71342000	52343000	145780000	84374000	61409000	580760000	305900000	274860000	184790000	104890000	79902000	26690	1459	25282	166945;166946;166947;166948;166949;166950;166951;166952;166953;166954;166955;166956;166957;166958;166959;166960	226006;226007;226008;226009;226010;226011;226012;226013;226014;226015;226016;226017;226018;226019;226020;226021;226022;226023;226024;226025;226026;226027;226028;226029;226030;226031;226032;226033;226034;226035;226036;226037;226038;226039;226040;226041	226041			36	
IVSGIITPIHEQWEK	1	Unmodified	1748.9461	0.94612052	3836	Q92530	PSMF1	Proteasome inhibitor PI31 subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	65.254	64.658	3	6.5666E-05	55768	160511_QHF_FH_JSI12i_3	99.344	81.544			0.61029	0.58222	34.781	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.81288	0.96895	NaN	1	0	Median	0.52277	0.48354	NaN	1	1	Median	0.71248	0.70105	NaN	1	1	Median	737410000	464080000	273340000	0	0	0	55064000	32866000	22198000	338090000	220290000	117800000	344260000	210920000	133340000	26691	3836	25283	166961;166962;166963	226042;226043;226044	226044			3	
IVSGKDYNVTANSK	2	Acetyl (K)	1536.7784	0.77838649	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	0.853					5	8	6	1		2	6	6	6	39.846	29.65	2;3	1.8209E-55	6002	160513_QHF_FH_JSI9Kac_3	210.41	183.1			0.76046	0.86298	29.527	19	1	Median	0.89552	0.72911	33.532	2	1	Median	0.76756	0.90575	13.967	6	0	Median	0.55559	0.54951	15.291	6	0	Median	0.83923	0.88276	7.7005	5	0	Median	1981000000	1101600000	879410000	268250000	111160000	157080000	455420000	241630000	213790000	737830000	441150000	296690000	519490000	307650000	211840000	26692	761	25284	166964;166965;166966;166967;166968;166969;166970;166971;166972;166973;166974;166975;166976;166977;166978;166979;166980;166981;166982;166983	226045;226046;226047;226048;226049;226050;226051;226052;226053;226054;226055;226056;226057;226058;226059;226060;226061;226062;226063;226064;226065;226066;226067	226053	368		23	
IVSGNLR	0	Unmodified	757.44464	0.44463717	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	13.159	12.662	2	0.018612	10203	160511_QHF_FH_JSI10i_2	59.641	7.4097			0.80235	0.93969	12.988	6	0	Median	1.1592	0.9818	NaN	1	0	Median	0.71015	0.88547	10.209	2	0	Median	0.95903	0.93822	25.72	2	0	Median	0.83524	0.92778	NaN	1	0	Median	1172800000	638550000	534280000	242780000	94728000	148050000	384370000	252470000	131900000	337160000	195160000	141990000	208520000	96189000	112330000	26693	2772	25285	166984;166985;166986;166987;166988;166989	226068;226069;226070	226070			3	
IVSLEPAYPPVFYLNK	1	Unmodified	1849.0026	0.0025727675	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	4	3	1	100.63	100.53	2;3	8.2477E-11	86447	160511_QHF_FH_JSI12i_2	194.17	146.16			0.90635	0.95203	13.574	8	5	Median	1.0987	0.94033	NaN	1	0	Median	0.89003	1.0792	7.835	3	3	Median	0.92297	0.93233	12.292	3	2	Median	0.68509	0.7544	NaN	1	0	Median	554980000	287250000	267720000	88454000	39990000	48464000	133650000	69276000	64373000	205030000	108700000	96328000	127840000	69285000	58559000	26694	2493	25286	166990;166991;166992;166993;166994;166995;166996;166997;166998	226071;226072;226073;226074;226075;226076;226077;226078;226079;226080;226081;226082	226074			12	
IVSLFAEHNDLQYAAPGGLIGVGTK	1	Unmodified	2569.354	0.35403784	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.11		8	11						4	4	5	7	7	92.971	91.273	2;3;4	2.0846E-31	83655	160511_QHF_FH_JSI11i_3	171.09	153.38			0.9158	0.90848	26.915	22	7	Median	0.99998	0.85624	10.106	4	1	Median	0.78317	0.91507	28.305	5	1	Median	0.90266	0.84135	27.408	7	2	Median	0.82055	0.85803	28.461	6	3	Median	4720600000	2338800000	2381800000	510000000	237490000	272520000	762210000	355200000	407010000	1638100000	855850000	782220000	1810400000	890270000	920090000	26695	1508	25287	166999;167000;167001;167002;167003;167004;167005;167006;167007;167008;167009;167010;167011;167012;167013;167014;167015;167016;167017;167018;167019;167020;167021	226083;226084;226085;226086;226087;226088;226089;226090;226091;226092;226093;226094;226095;226096;226097;226098;226099;226100;226101;226102;226103;226104;226105;226106;226107;226108;226109;226110;226111;226112;226113;226114;226115;226116;226117;226118;226119;226120;226121;226122;226123;226124;226125;226126;226127;226128;226129;226130	226089			48	
IVSLMWDPVTPYR	0	Unmodified	1575.8119	0.81193523	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.3	6.6		1							2			1	2	88.886	82.378	2	9.0119E-05	43153	160513_QHF_FH_JSI11Kac_6	99.283	82.709			0.85149	0.92225	51.857	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71256	0.70261	NaN	1	0	Median	1.2269	1.329	51.671	2	1	Median	90488000	34837000	55651000	0	0	0	0	0	0	33445000	19339000	14105000	57043000	15497000	41545000	26696	648	25288	167022;167023;167024	226131;226132	226132			1	
IVSLPECFNSPYGAK	1	Unmodified	1680.8181	0.81814282	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.1	69.152	2	4.8675E-05	60540	160511_QHF_FH_JSI11i_2	118.9	104.75			1.0028	1.0574	33.239	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83199	0.83588	NaN	1	0	Median	1.2086	1.3375	NaN	1	0	Median	49208000	24262000	24947000	0	0	0	0	0	0	28550000	13828000	14722000	20659000	10434000	10225000	26697	4924	25289	167025;167026;167027	226133;226134;226135;226136;226137	226136			5	
IVSNGDEQLEK	1	Unmodified	1230.6092	0.6091959	2917	Q5R372	RABGAP1L	Rab GTPase-activating protein 1-like	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.267	18.786	2	0.0033523	16321	160511_QHF_FH_JSI12i_1	68.893	39.42			2.2262	2.3392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2262	2.3392	NaN	1	1	Median	30169000	12837000	17331000	0	0	0	0	0	0	0	0	0	30169000	12837000	17331000	26698	2917	25290	167028	226138	226138			1	
IVSQLLTLMDGLK	1	Unmodified	1429.8214	0.82143728	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.62	2	8	6						9	6	7	6	6	98.406	95.321	2;3	4.1179E-67	88138	160511_QHF_FH_JSI12i_3	224.42	190.17			1.0222	1.0114	93.529	24	9	Median	1.4517	1.199	130	5	2	Median	0.71434	0.82751	95.199	7	3	Median	1.2048	1.1819	45.719	6	2	Median	0.99005	1.104	115.28	6	2	Median	22673000000	11163000000	11509000000	3627000000	1455200000	2171800000	4892700000	2786100000	2106700000	6886400000	3167000000	3719400000	7266500000	3755200000	3511400000	26699	1846	25291	167029;167030;167031;167032;167033;167034;167035;167036;167037;167038;167039;167040;167041;167042;167043;167044;167045;167046;167047;167048;167049;167050;167051;167052;167053	226139;226140;226141;226142;226143;226144;226145;226146;226147;226148;226149;226150;226151;226152;226153;226154;226155;226156;226157;226158;226159;226160;226161;226162;226163;226164;226165;226166;226167;226168;226169;226170;226171;226172;226173	226166			35	
IVSQLLTLMDGLK	1	Oxidation (M)	1445.8164	0.8163519	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.05	3.78		4	13					2		1	5	6	7	80.603	79.365	2	0.00048274	69431	160511_QHF_FH_JSI12i_3	110.86	80.17			0.85464	0.85318	54.406	18	18	Median	0.49356	0.41773	NaN	1	1	Median	0.442	0.4982	84.087	5	5	Median	1.2017	1.1358	34.954	5	5	Median	0.87366	0.91854	38.337	7	7	Median	427120000	218660000	208460000	10391000	7469600	2921000	78850000	49847000	29004000	119750000	51910000	67843000	218120000	109430000	108690000	26700	1846	25291	167054;167055;167056;167057;167058;167059;167060;167061;167062;167063;167064;167065;167066;167067;167068;167069;167070;167071;167072	226174;226175;226176;226177;226178;226179;226180;226181;226182;226183;226184;226185;226186;226187;226188;226189;226190;226191;226192	226191		1525	19	
IVSQPQPAR	0	Unmodified	994.55598	0.55597854	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										2	1	11.18	10.942	2	0.00017844	8855	160511_QHF_FH_JSI12i_1	104.21	80.685			0.64288	0.62803	10.925	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65141	0.64676	4.1548	2	2	Median	0.51756	0.539	NaN	1	1	Median	1105900000	773930000	331930000	0	0	0	0	0	0	537560000	349360000	188200000	568300000	424570000	143730000	26701	3438	25292	167073;167074;167075	226193;226194;226195	226194			3	
IVSRPEELREDDVGTGAGLLEIK	1	Unmodified	2495.3231	0.32313164	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.04		7	8						3	4	6	5	3	68.935	66.75	3;4	4.3328E-48	56319	160511_QHF_FH_JSI10i_3	206.86	192.7			0.96687	0.97992	14.166	18	2	Median	1.1478	0.96696	6.4138	4	0	Median	0.80139	0.94463	13.156	6	2	Median	1.0234	0.9952	16.538	5	0	Median	0.79665	0.81642	22.047	3	0	Plateau	6530100000	3183600000	3346500000	927970000	430430000	497540000	2312100000	1253000000	1059200000	2936000000	1308400000	1627600000	354020000	191800000	162220000	26702	1655	25293	167076;167077;167078;167079;167080;167081;167082;167083;167084;167085;167086;167087;167088;167089;167090;167091;167092;167093	226196;226197;226198;226199;226200;226201;226202;226203;226204;226205;226206;226207;226208;226209;226210;226211;226212;226213;226214;226215;226216;226217;226218;226219;226220;226221;226222;226223;226224;226225;226226;226227;226228;226229;226230;226231;226232;226233;226234;226235;226236;226237;226238;226239;226240;226241;226242;226243;226244;226245;226246	226205			51	
IVSRPEELREDDVGTGAGLLEIKK	2	Acetyl (K)	2665.4287	0.42865934	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	1	0	0	3			By MS/MS		16	0									1			1		75.392	66.056	4	9.0324E-05	35987	160513_QHF_FH_JSI11Kac_6	77.576	54.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33922000	33922000	0	0	0	0	0	0	0	33922000	33922000	0	0	0	0	26703	1655	25294	167094	226247	226247	1677		1	
IVSSIFR	0	Unmodified	820.48069	0.48068833	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	41.631	40.808	2	0.019993	34833	160511_QHF_FH_JSI12i_3	57.463	26.795			0.93528	0.92676	5.4881	4	0	Median	1.1431	0.93093	NaN	1	0	Median	0.91931	1.0313	NaN	1	0	Median	0.95152	0.92261	NaN	1	0	Median	0.91102	0.92003	NaN	1	0	Median	358990000	171270000	187720000	112640000	45342000	67300000	102610000	52756000	49853000	63825000	28882000	34943000	79916000	44294000	35621000	26704	4610	25295	167095;167096;167097;167098	226248	226248			1	
IVSSSDVGHDEYSTQSLVK	1	Unmodified	2049.9855	0.98547873	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	44.456	43.637	3	3.2683E-08	38118	160511_QHF_FH_JSI9i_2	104.03	93.969			0.89761	0.97699	20.804	8	1	Median	0.85991	0.71281	3.5074	2	0	Median	0.78561	0.93993	5.0588	2	0	Median	1.1035	1.0974	13.097	2	0	Median	1.0423	1.1056	17.076	2	1	Median	851310000	459130000	392180000	130360000	61111000	69251000	166970000	107070000	59893000	325800000	174630000	151170000	228190000	116320000	111870000	26705	2162	25296	167099;167100;167101;167102;167103;167104;167105;167106;167107	226249;226250;226251;226252;226253;226254;226255;226256;226257;226258;226259;226260;226261;226262;226263;226264;226265;226266;226267;226268;226269	226263			21	
IVSTQEK	1	Unmodified	803.43888	0.43888309	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.0634	5.7395	2	0.034446	3736	160511_QHF_FH_JSI10i_1	50.127	26.154			0.8227	0.75535	16.34	4	0	Median	0.82919	0.67798	NaN	1	0	Median	0.61441	0.71047	NaN	1	0	Median	0.81625	0.80306	NaN	1	0	Median	0.93305	0.97762	NaN	1	0	Median	695110000	401480000	293630000	128050000	70637000	57408000	163740000	100870000	62865000	203930000	117150000	86780000	199400000	112820000	86578000	26706	3308	25297	167108;167109;167110;167111	226270;226271;226272	226272			3	
IVSWLEYESSFSNEEAQK	1	Unmodified	2144.9902	0.99022976	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.56	4	9	4						8	4	4	8	9	83.284	80.142	2;3	1.2217E-112	40167	160513_QHF_FH_JSI9Kac_6	257.8	227.99			0.87769	0.9247	43.313	23	10	Median	0.81423	0.68069	20.778	3	1	Median	0.60551	0.73623	15.115	4	2	Median	1.0171	1.0155	58.958	8	3	Median	0.91802	1.0013	44.764	8	4	Median	3838400000	1849100000	1989300000	955290000	455050000	500240000	621740000	406480000	215260000	1059300000	469480000	589840000	1202100000	518090000	684000000	26707	2193	25298	167112;167113;167114;167115;167116;167117;167118;167119;167120;167121;167122;167123;167124;167125;167126;167127;167128;167129;167130;167131;167132;167133;167134;167135;167136	226273;226274;226275;226276;226277;226278;226279;226280;226281;226282;226283;226284;226285;226286;226287;226288;226289;226290;226291;226292;226293;226294;226295;226296;226297;226298;226299;226300;226301;226302;226303;226304;226305;226306;226307;226308;226309;226310;226311;226312;226313;226314;226315;226316;226317;226318;226319;226320;226321;226322	226312			50	
IVSWSQVGVEPSIMGIGPIPAIK	1	Unmodified	2377.3079	0.30793927	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	101.77	101.69	3	7.3661E-09	89540	160511_QHF_FH_JSI9i_2	84.181	69.091			0.99258	1.0402	19.453	5	0	Median	0.99258	0.83747	NaN	1	0	Median	0.82923	1.021	NaN	1	0	Median	1.2398	1.224	23.008	2	0	Median	0.94818	1.0479	NaN	1	0	Median	1475600000	758840000	716760000	238870000	123240000	115630000	344030000	204060000	139970000	503360000	231960000	271400000	389330000	199580000	189750000	26708	4496	25299	167137;167138;167139;167140;167141	226323;226324;226325;226326	226324			3	
IVTAQENGK	1	Unmodified	958.50836	0.50835964	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.8311	7.4837	2	4.4315E-05	5213	160511_QHF_FH_JSI11i_1	98.629	37.842			1.0459	0.8921	12.349	4	1	Linear	1.0575	0.84555	NaN	1	0	Median	0.77701	0.91283	NaN	1	0	Median	1.0344	1.008	NaN	1	0	Median	1.0785	1.1242	NaN	1	1	Median	846710000	433800000	412910000	250930000	135460000	115480000	234750000	126520000	108230000	207480000	94802000	112670000	153560000	77026000	76531000	26709	2902	25300	167142;167143;167144;167145	226327;226328;226329;226330;226331;226332	226328			6	
IVTDRETGSSK	1	Unmodified	1191.6095	0.60953025	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.2	5	8	8				3	4	4	6	9	9	8	6.6788	3.5748	2;3	4.0651E-17	3660	160511_QHF_FH_JSI12i_3	158.56	129.84			0.91115	0.97494	17.182	32	0	Median	1.1523	1.0053	10.435	6	0	Median	0.86526	1.0282	8.9471	9	0	Median	0.92678	0.9031	23.872	9	0	Median	0.83469	0.91663	19.844	8	0	Median	42301000000	21421000000	20880000000	6157700000	2769300000	3388300000	11231000000	6041600000	5189400000	16619000000	7790900000	8828300000	8293400000	4819200000	3474200000	26710	1154	25301	167146;167147;167148;167149;167150;167151;167152;167153;167154;167155;167156;167157;167158;167159;167160;167161;167162;167163;167164;167165;167166;167167;167168;167169;167170;167171;167172;167173;167174;167175;167176;167177	226333;226334;226335;226336;226337;226338;226339;226340;226341;226342;226343;226344;226345;226346;226347;226348;226349;226350;226351;226352;226353;226354;226355;226356;226357;226358;226359;226360;226361;226362;226363;226364;226365;226366;226367;226368;226369;226370;226371;226372;226373;226374;226375;226376;226377;226378;226379;226380;226381;226382	226382			50	
IVTDSDSK	1	Unmodified	863.42363	0.42362696	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.2314	5.9075	2	0.0054523	3941	160511_QHF_FH_JSI12i_1	73.665	29.85			0.87679	1.2018	24.189	4	2	Linear	1.1959	0.97592	NaN	1	0	Median	0.8668	1.0139	NaN	1	0	Median	1.6134	1.5819	NaN	1	1	Median	1.3313	1.4245	NaN	1	1	Median	882050000	429410000	452640000	172290000	78456000	93837000	249030000	134420000	114610000	186640000	77506000	109130000	274090000	139020000	135070000	26711	4673	25302	167178;167179;167180;167181	226383;226384;226385;226386;226387	226384			5	
IVTFTPFYMIK	1	Unmodified	1358.7308	0.73083136	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.124	80.775	2	0.01367	45223	160513_QHF_FH_JSI11Kac_6	55.235	43.277			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26712	4219	25303	167182	226388	226388			1	
IVTGFNGIPFTIQR	0	Unmodified	1561.8617	0.86166261	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		88.512	88.512	2	0.0065702	73706	160511_QHF_FH_JSI10i_3	65.5	39.382			1.1996	1.1225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1996	1.1225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16698000	7156900	9541200	0	0	0	0	0	0	16698000	7156900	9541200	0	0	0	26713	5118	25304	167183;167184	226389;226390	226390			2	
IVTGGSDNHLILVDLR	0	Unmodified	1720.9472	0.94718315	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	68.618	68.469	2;3	4.4669E-05	61011	160511_QHF_FH_JSI11i_3	78.234	60.096			1.1714	1.1123	15.586	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1554	1.0671	8.755	2	1	Median	1.2461	1.2537	19.809	2	1	Median	294720000	129140000	165580000	0	0	0	0	0	0	151110000	69575000	81535000	143610000	59560000	84048000	26714	1414	25305	167185;167186;167187;167188	226391;226392;226393;226394	226392			4	
IVTHDIPIK	1	Unmodified	1034.6124	0.61243078	460	O60921	HUS1	Checkpoint protein HUS1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.179	31.256	3	0.00071193	27104	160511_QHF_FH_JSI9i_2	71.349	55.687			0.83669	0.9549	25.689	4	1	Median	1.7694	1.5062	NaN	1	1	Median	0.80866	0.99458	NaN	1	0	Median	0.84394	0.84533	NaN	1	0	Median	0.82949	0.9168	NaN	1	0	Median	174280000	91623000	82661000	23462000	9724900	13737000	46050000	24770000	21280000	67929000	37846000	30083000	36844000	19282000	17562000	26715	460	25306	167189;167190;167191;167192	226395;226396;226397;226398;226399;226400	226397			6	
IVTLAPELGR	0	Unmodified	1067.6339	0.63389451	5551	Q9Y303	AMDHD2	Putative N-acetylglucosamine-6-phosphate deacetylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.481	56.125	2	0.015035	48104	160511_QHF_FH_JSI12i_2	45.161	33.939			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26716	5551	25307	167193	226401	226401			1	
IVTLEEEPIK	1	Unmodified	1169.6544	0.65435518	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		50.316	49.503	2	0.017066	43986	160511_QHF_FH_JSI9i_1	66.568	41.749			2.6014	2.3429	51.531	2	0	Median	1.947	1.6274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.4757	3.3728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162080000	54186000	107900000	86011000	28194000	57817000	0	0	0	76072000	25992000	50080000	0	0	0	26717	4936	25308	167194;167195	226402	226402			0	
IVTLFSDFK	1	Unmodified	1068.5855	0.58554733	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		79.255	78.625	2	0.0049801	68968	160511_QHF_FH_JSI11i_2	65.246	52.258			0.50164	0.49926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50164	0.49926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43178000	24304000	18874000	0	0	0	0	0	0	43178000	24304000	18874000	0	0	0	26718	3173	25309	167196	226403	226403			1	
IVTLFSDFKPYK	2	Unmodified	1456.7966	0.79660274	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	3	5	4	3	77.987	75.226	2;3	6.6849E-06	64630	160511_QHF_FH_JSI10i_3	116.24	99.026			0.69216	0.71358	88.556	15	11	Median	0.89371	0.71358	45.302	3	1	Plateau	0.69216	0.7886	70.274	5	4	Median	0.78532	0.77743	104.25	4	3	Median	0.57819	0.6172	151.57	3	3	Median	2432000000	1034500000	1397400000	353460000	193080000	160390000	546600000	278830000	267770000	886630000	334550000	552080000	645300000	228090000	417210000	26719	3173	25310	167197;167198;167199;167200;167201;167202;167203;167204;167205;167206;167207;167208;167209;167210;167211	226404;226405;226406;226407;226408;226409;226410;226411;226412;226413;226414;226415;226416;226417;226418;226419;226420;226421;226422	226409			19	
IVTSTYK	1	Unmodified	810.44872	0.4487195	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	13.287	12.857	2	0.014706	10306	160511_QHF_FH_JSI11i_1	65.803	28.775			0.95734	1.0639	40.334	9	2	Median	0.87381	0.72726	77.101	2	1	Median	0.8409	1.03	6.2161	2	0	Median	0.78676	0.78676	54.887	2	1	Median	1.1312	1.2332	20.496	3	0	Plateau	3831700000	2021700000	1810100000	621740000	328060000	293680000	992620000	569370000	423250000	1138800000	597740000	541050000	1078600000	526500000	552080000	26720	5250	25311	167212;167213;167214;167215;167216;167217;167218;167219;167220	226423;226424;226425;226426;226427;226428	226423			6	
IVTTDFRK	1	Unmodified	978.54983	0.54983053	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	3	1	20.896	20.595	2;3	0.00074812	16743	160511_QHF_FH_JSI12i_3	75.213	42.372			0.95889	0.90085	25.358	4	2	Median	NaN	NaN	NaN	0	0	Median	0.53009	0.60827	NaN	1	1	Median	0.95889	0.90085	8.9923	2	1	Median	1.0688	1.1	NaN	1	0	Median	1416200000	786080000	630120000	0	0	0	523590000	371690000	151910000	583460000	251190000	332260000	309150000	163210000	145940000	26721	1548	25312	167221;167222;167223;167224;167225	226429;226430;226431;226432;226433;226434	226434			6	
IVTVNSILGIISVPLSIGYCASK	1	Unmodified	2403.3447	0.3447187	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.51	91.087	3	1.1673E-05	52305	160513_QHF_FH_JSI11Kac_6	108.64	100.35			0.57109	0.54924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57109	0.54924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	121230000	71932000	49293000	0	0	0	0	0	0	121230000	71932000	49293000	0	0	0	26722	5565	25313	167226	226435	226435			1	
IVTVVPQDTK	1	Unmodified	1098.6285	0.62847478	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.157	33.554	2	5.5871E-05	29428	160511_QHF_FH_JSI9i_1	91.867	64.737			1.0278	1.0055	22.255	4	0	Median	1.1077	0.92002	NaN	1	0	Median	0.9195	1.0737	NaN	1	0	Median	0.95368	0.94158	NaN	1	0	Median	1.4518	1.4913	NaN	1	0	Median	830470000	407740000	422730000	214470000	100670000	113810000	211500000	131980000	79527000	231630000	103210000	128420000	172860000	71890000	100970000	26723	648	25314	167227;167228;167229;167230	226436;226437;226438;226439	226439			4	
IVVAGNNEDVSFSRPADLDLIQSTPFKPLALK	2	Unmodified	3453.8508	0.85077016	4613	Q9GZY8	MFF	Mitochondrial fission factor	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		100.78	100.78	4	0.0031441	89778	160511_QHF_FH_JSI11i_3	34.512	32.63			0.79649	0.73897	7.8963	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79649	0.73897	7.8963	2	2	Median	NaN	NaN	NaN	0	0	Median	186880000	99798000	87082000	0	0	0	0	0	0	186880000	99798000	87082000	0	0	0	26724	4613	25315	167231;167232	226440;226441	226440			2	
IVVAMAK	1	Unmodified	730.44113	0.4411317	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.78	3	3					2	2	2	2	4	3	3	34.817	29.694	2	0.018612	25959	160511_QHF_FH_JSI10i_2	59.641	28.972			0.92836	1.0098	38.706	12	0	Median	1.2957	1.0664	15.658	2	0	Median	0.83179	0.99926	18.288	4	0	Median	0.32971	0.32126	75.429	3	0	Plateau	0.9334	1.0321	19.013	3	0	Median	2794400000	1415200000	1379200000	636430000	265980000	370440000	991610000	560660000	430950000	185920000	119730000	66198000	980450000	468800000	511650000	26725	1341	25316	167233;167234;167235;167236;167237;167238;167239;167240;167241;167242;167243;167244	226442;226443;226444;226445;226446;226447;226448	226448			7	
IVVDSESRK	1	Unmodified	1031.5611	0.56112349	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	9.7296	9.7784	3	0.0039375	7129	160511_QHF_FH_JSI12i_3	43.282	34.961			1.1277	1.0949	2.3077	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1615	1.0772	NaN	1	0	Median	1.0948	1.1129	NaN	1	0	Median	218130000	109330000	108800000	0	0	0	0	0	0	99341000	40809000	58532000	118790000	68518000	50272000	26726	2956	25317	167245;167246	226449;226450	226450			2	
IVVEEGSK	1	Unmodified	859.4651	0.46509784	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.084	14.654	2	0.031057	12360	160511_QHF_FH_JSI12i_1	41.448	23.463			0.91569	0.9447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91569	0.9447	NaN	1	0	Median	127110000	65342000	61764000	0	0	0	0	0	0	0	0	0	127110000	65342000	61764000	26727	122	25318	167247	226451	226451			1	
IVVEFLQSNSDSTYEDLINK	1	Unmodified	2313.1376	0.13762228	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	96.655	96.412	3	0.0041858	87599	160511_QHF_FH_JSI12i_1	42.529	33.365			0.72195	0.72585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72195	0.72585	NaN	1	1	Median	17408000	11370000	6038000	0	0	0	0	0	0	0	0	0	17408000	11370000	6038000	26728	1273	25319	167248	226452	226452			1	
IVVEHIIMK	1	Unmodified	1080.6365	0.63653704	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.81		4	2						5	2	3	3	3	50.989	46.435	2;3	8.9966E-05	25412	160513_QHF_FH_JSI10Kac_6	84.213	77.324			1.0342	1.0811	53.701	11	1	Median	1.1734	1.0029	16.347	2	0	Median	0.77525	0.96113	83.909	3	1	Median	1.1115	1.1349	20.048	3	0	Median	0.99177	1.0811	47.404	3	0	Median	525350000	251900000	273440000	78981000	37400000	41581000	123850000	71356000	52496000	189730000	79907000	109830000	132780000	63240000	69539000	26729	1890	25320	167249;167250;167251;167252;167253;167254;167255;167256;167257;167258;167259	226453;226454;226455;226456;226457;226458;226459;226460;226461;226462;226463	226461			9	
IVVELPHSVNSKL	1	Unmodified	1433.8242	0.82421447	3530	Q8N4Q0	ZADH2	Zinc-binding alcohol dehydrogenase domain-containing protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.202	62.916	3	0.033623	54230	160511_QHF_FH_JSI12i_3	31.881	19.905			1.3076	1.4021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3076	1.4021	NaN	1	1	Median	20337000	9858300	10479000	0	0	0	0	0	0	0	0	0	20337000	9858300	10479000	26730	3530	25321	167260	226464	226464			1	
IVVFQYSDGK	1	Unmodified	1154.5972	0.59717465	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.68	6.7	4	4	1				3	4	3	6	5	4	4	57.905	52.046	2	9.2833E-06	46986	160511_QHF_FH_JSI10i_1	105.52	65.252			0.89147	0.9873	27.695	19	3	Median	0.98665	0.83213	44.946	6	2	Median	0.84891	0.9873	17.073	5	0	Median	1.027	1.0271	8.4205	4	1	Median	0.90915	0.98174	13.74	4	0	Median	2407000000	1279400000	1127600000	736870000	393940000	342930000	682400000	392630000	289770000	399580000	177410000	222160000	588110000	315400000	272710000	26731	2734	25322	167261;167262;167263;167264;167265;167266;167267;167268;167269;167270;167271;167272;167273;167274;167275;167276;167277;167278;167279	226465;226466;226467;226468;226469;226470;226471;226472;226473;226474;226475;226476;226477;226478;226479;226480;226481;226482;226483	226469			18	
IVVHLHPAPPNK	1	Unmodified	1320.7666	0.76664001	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	30.557	29.721	4	0.0020523	24284	160511_QHF_FH_JSI9i_3	48.741	48.741			0.8255	0.76784	24.1	5	0	Median	1.3069	1.0877	NaN	1	0	Median	0.78024	0.88685	28.094	2	0	Median	0.8255	0.76784	NaN	1	0	Median	0.64024	0.64153	NaN	1	0	Median	364270000	179340000	184920000	100440000	45509000	54936000	63788000	32948000	30840000	94683000	47443000	47240000	105350000	53441000	51909000	26732	3342	25323	167280;167281;167282;167283;167284	226484;226485;226486;226487;226488;226489	226487			4	
IVVLFYK	1	Unmodified	880.54223	0.54222595	5722;3218	Q9Y6E2;Q7L1Q6	BZW2;BZW1	Basic leucine zipper and W2 domain-containing protein 2;Basic leucine zipper and W2 domain-containing protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.3		4	4			1	1	4	6	6	6	5	3	72.179	65.904	2	0.0015755	36895	160513_QHF_FH_JSI10Kac_6	106.84	86.555			0.93625	0.8995	21.17	19	0	Median	1.0784	0.89974	26.796	6	0	Median	0.73198	0.87904	16.589	5	0	Median	1.0141	0.99494	15.993	5	0	Median	0.7704	0.79572	24.14	3	0	Plateau	22079000000	10698000000	11381000000	4717200000	2154300000	2562900000	6965600000	4269100000	2696500000	6750700000	2483900000	4266900000	3645600000	1791200000	1854400000	26733	5722;3218	25324	167285;167286;167287;167288;167289;167290;167291;167292;167293;167294;167295;167296;167297;167298;167299;167300;167301;167302;167303;167304	226490;226491;226492;226493;226494;226495;226496;226497;226498;226499;226500;226501;226502;226503;226504;226505;226506;226507;226508;226509;226510;226511;226512;226513;226514;226515;226516;226517;226518;226519;226520;226521;226522;226523;226524;226525;226526;226527;226528;226529;226530;226531;226532;226533;226534;226535;226536;226537;226538;226539;226540	226540			51	
IVVLLQR	0	Unmodified	839.55927	0.559273	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.06			4					3	4	3	3	3	2	55.764	49.141	2	4.9299E-17	26661	160513_QHF_FH_JSI11Kac_6	166.66	104.67			0.96857	0.97157	14.814	11	0	Median	1.1261	0.97308	4.1625	3	0	Median	0.66479	0.77936	11.153	3	0	Plateau	1.2299	1.1655	18.654	3	0	Median	0.89265	0.92407	10.911	2	0	Median	5405400000	2770600000	2634700000	1163100000	563510000	599620000	1848300000	972000000	876260000	1300300000	651400000	648910000	1093700000	583720000	509930000	26734	2244	25325	167305;167306;167307;167308;167309;167310;167311;167312;167313;167314;167315	226541;226542;226543;226544;226545;226546;226547;226548;226549;226550;226551;226552;226553;226554;226555;226556	226546			16	
IVVMPGGGITDR	0	Unmodified	1213.6489	0.64889264	4993	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.75	0.433	1	3								1	1	1	1	53.696	52.581	2	0.0041056	47804	160511_QHF_FH_JSI11i_1	56.563	17.415			0.47219	0.5892	20.093	3	0	Plateau	0.49706	0.41876	NaN	1	0	Median	0.47123	0.5892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53051	0.59676	NaN	1	0	Median	276350000	180840000	95507000	92741000	54854000	37887000	97840000	70429000	27412000	0	0	0	85766000	55558000	30208000	26735	4993	25326	167316;167317;167318;167319	226557;226558;226559	226557			3	
IVVNLTGR	0	Unmodified	870.5287	0.52870115	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.59	6.48	2	4	4				1	3	3	3	5	5	4	46.198	41.613	2	0.00013877	21639	160513_QHF_FH_JSI12Kac_6	122.18	50.88			1.0725	1.0696	18.904	17	0	Median	1.2766	1.0696	23.556	3	0	Median	0.90956	1.0912	20.074	5	0	Median	1.0725	1.0568	18.667	5	0	Median	0.99351	1.0791	16.414	4	0	Median	19937000000	9747800000	10190000000	3054800000	1274500000	1780300000	4689500000	2524700000	2164800000	6057500000	2938200000	3119300000	6135600000	3010400000	3125200000	26736	1986	25327	167320;167321;167322;167323;167324;167325;167326;167327;167328;167329;167330;167331;167332;167333;167334;167335;167336	226560;226561;226562;226563;226564;226565;226566;226567;226568;226569;226570;226571;226572;226573;226574;226575;226576;226577;226578;226579	226578			20	
IVVPPLPGK	1	Unmodified	918.59024	0.59023878	5430	Q9UMY4	SNX12	Sorting nexin-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	2	4	3	62.05	58.521	2	0.0015825	51665	160511_QHF_FH_JSI9i_1	68.422	68.422			0.90105	0.98636	22.623	11	0	Median	1.4144	1.1772	3.1057	2	0	Median	0.97655	1.1712	5.7245	2	0	Median	0.84362	0.83059	33.095	4	0	Median	0.80501	0.89139	7.7101	3	0	Median	508350000	256970000	251380000	97198000	42822000	54376000	116820000	58246000	58569000	170250000	87996000	82250000	124090000	67909000	56186000	26737	5430	25328	167337;167338;167339;167340;167341;167342;167343;167344;167345;167346;167347	226580;226581;226582;226583;226584;226585;226586;226587;226588;226589;226590;226591;226592;226593;226594;226595	226589			16	
IVVQGEPGDEFFIILEGSAAVLQR	0	Unmodified	2586.3694	0.36935355	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By matching		6.67	6.6		2							1	2		1		101.7	98.591	3	4.6394E-09	90786	160511_QHF_FH_JSI9i_2	79.445	72.345			1.271	1.2669	57.184	3	1	Plateau	0.79896	0.6934	64.171	2	1	Median	NaN	NaN	NaN	0	0	Median	1.271	1.2669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	241680000	139670000	102010000	158600000	99415000	59183000	0	0	0	83084000	40256000	42828000	0	0	0	26738	977	25329	167348;167349;167350	226596;226597	226596			2	
IVVSNTPR	0	Unmodified	884.50797	0.50796571	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	18.102	17.066	2	0.011832	13848	160511_QHF_FH_JSI11i_2	53.351	32.87			1.1853	1.3269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1853	1.3269	NaN	1	0	Median	90312000	42030000	48282000	0	0	0	0	0	0	0	0	0	90312000	42030000	48282000	26739	3860	25330	167351;167352	226598;226599	226599			2	
IVVVAEQRPDASEEDSFQWMSR	0	Unmodified	2578.2122	0.21220098	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.081	73.081	3	8.6198E-06	65199	160511_QHF_FH_JSI11i_3	65.784	62.731			1.2703	1.1936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2703	1.1936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37795000	15333000	22462000	0	0	0	0	0	0	37795000	15333000	22462000	0	0	0	26740	5202	25331	167353	226600;226601	226601			2	
IVVVTAGVR	0	Unmodified	912.57565	0.57565135	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.77	4	4	4	1	1	4	5	11	10	15	13	9	7	43.518	36.023	2	2.67E-16	6719	160513_QHF_FH_JSI9Kac_3	161.68	112.32			0.97093	0.96741	24.004	44	3	Median	1.1264	1.1355	36.217	15	0	Plateau	0.82493	0.96809	14.74	13	2	Median	1.0306	0.99631	11.96	9	1	Median	0.94271	0.98843	14.379	7	0	Median	51052000000	22785000000	28267000000	12328000000	5597700000	6730600000	12818000000	6468800000	6349300000	15829000000	6174000000	9655400000	10076000000	4544400000	5531600000	26741	864	25332	167354;167355;167356;167357;167358;167359;167360;167361;167362;167363;167364;167365;167366;167367;167368;167369;167370;167371;167372;167373;167374;167375;167376;167377;167378;167379;167380;167381;167382;167383;167384;167385;167386;167387;167388;167389;167390;167391;167392;167393;167394;167395;167396;167397	226602;226603;226604;226605;226606;226607;226608;226609;226610;226611;226612;226613;226614;226615;226616;226617;226618;226619;226620;226621;226622;226623;226624;226625;226626;226627;226628;226629;226630;226631;226632;226633;226634;226635;226636;226637;226638;226639;226640;226641;226642;226643;226644;226645;226646;226647;226648;226649;226650;226651;226652;226653;226654;226655;226656;226657;226658;226659;226660;226661;226662;226663;226664;226665;226666;226667;226668;226669;226670;226671;226672;226673;226674;226675;226676;226677;226678;226679;226680;226681;226682;226683;226684;226685	226632			84	
IVVVWVGTNNHGHTAEQVTGGIK	1	Unmodified	2415.2659	0.26589153	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.33			3						11	5	2	3	4	65.511	58.658	3;4	2.0774E-48	31038	160513_QHF_FH_JSI9Kac_6	179.19	160.13			1.3306	1.2217	28.439	11	2	Median	0.96328	0.81543	29.621	4	2	Linear	0.69198	0.82092	1.9422	2	0	Median	1.7001	1.644	12.751	3	0	Median	1.2133	1.2656	14.755	2	0	Median	518140000	238310000	279830000	123860000	53532000	70331000	173920000	88717000	85199000	123060000	49550000	73515000	97296000	46512000	50785000	26742	2629	25333	167398;167399;167400;167401;167402;167403;167404;167405;167406;167407;167408;167409;167410;167411	226686;226687;226688;226689;226690;226691;226692;226693;226694;226695;226696;226697;226698;226699;226700;226701;226702;226703	226694			17	
IVWLQEK	1	Unmodified	914.52255	0.52255314	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.758	47.775	2	0.026198	41957	160511_QHF_FH_JSI9i_2	54.205	22.902			0.86088	0.84041	10.68	4	0	Linear	1.2708	1.0806	NaN	1	0	Median	0.8344	1.0407	NaN	1	0	Median	0.83786	0.84797	NaN	1	0	Median	0.88453	0.96961	NaN	1	0	Median	801560000	451410000	350150000	167900000	80148000	87753000	172250000	88747000	83502000	269220000	163200000	106020000	192190000	119320000	72874000	26743	1787	25334	167412;167413;167414;167415	226704;226705;226706	226705			3	
IVYFILSR	0	Unmodified	1009.5961	0.59605244	2837	Q4KMQ2	ANO6	Anoctamin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.259	69.899	2	4.0237E-05	38900	160513_QHF_FH_JSI10Kac_6	130.04	130.04			0.98927	0.93073	6.5145	4	0	Median	1.0893	0.91663	NaN	1	0	Median	0.76855	0.92049	NaN	1	0	Median	1.0947	1.0527	NaN	1	0	Median	0.89839	0.94108	NaN	1	0	Median	855500000	442800000	412700000	168030000	63650000	104380000	517250000	308020000	209230000	119800000	49999000	69801000	50422000	21132000	29289000	26744	2837	25335	167416;167417;167418;167419	226707;226708;226709;226710;226711	226711			5	
IVYGHLDDPASQEIER	0	Unmodified	1840.8955	0.89554151	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.09	3	6	4					3		1	4	7	4	50.264	47.466	2;3	3.2228E-22	41105	160511_QHF_FH_JSI11i_2	138.05	122.41			1.1274	1.1731	27.873	14	5	Median	2.854	2.4094	NaN	1	1	Median	0.95608	1.1403	18.366	4	2	Median	1.134	1.1	27.869	5	2	Median	1.0883	1.1639	20.504	4	0	Median	3070400000	1523200000	1547200000	4629000	1106200	3522800	865330000	476960000	388360000	1144400000	524130000	620280000	1056100000	521000000	535070000	26745	4315	25336	167420;167421;167422;167423;167424;167425;167426;167427;167428;167429;167430;167431;167432;167433;167434;167435	226712;226713;226714;226715;226716;226717;226718;226719;226720;226721;226722;226723;226724;226725;226726;226727;226728;226729;226730;226731;226732;226733;226734;226735	226723			24	
IVYLYTK	1	Unmodified	898.51641	0.51640513	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.76	6.6	3	5	2			1	2	4	4	6	4	5	6	45.727	40.258	2	0.0055305	21756	160513_QHF_FH_JSI9Kac_5	94.407	74.125			0.98158	0.96439	34.785	20	3	Median	1.0836	0.91934	44.38	5	1	Median	0.94704	1.0269	9.7358	4	0	Median	0.97171	0.95969	16.664	5	0	Median	0.97801	1.0269	50.317	6	2	Median	25509000000	11984000000	13524000000	4852600000	2038700000	2813900000	5463000000	2704000000	2759000000	7981500000	3571100000	4410400000	7211400000	3670600000	3540800000	26746	1646	25337	167436;167437;167438;167439;167440;167441;167442;167443;167444;167445;167446;167447;167448;167449;167450;167451;167452;167453;167454;167455;167456	226736;226737;226738;226739;226740;226741;226742;226743;226744;226745;226746;226747;226748;226749;226750;226751;226752;226753;226754;226755;226756;226757;226758;226759;226760;226761;226762;226763;226764;226765;226766;226767;226768;226769;226770;226771;226772	226743			37	
IVYLYTKK	2	Acetyl (K)	1068.6219	0.62193284	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	57.302	47.711	2	0.015127	25782	160513_QHF_FH_JSI11Kac_6	96.253	29.221			0.8321	0.91995	22.179	4	0	Median	1.0667	0.91993	NaN	1	0	Median	0.78904	0.93072	NaN	1	0	Median	0.62318	0.59273	NaN	1	0	Median	0.87752	0.91997	NaN	1	0	Median	225760000	131120000	94633000	38555000	19581000	18974000	44932000	26152000	18780000	73779000	39008000	34771000	68491000	46383000	22108000	26747	1646	25338	167457;167458;167459;167460;167461	226773;226774;226775	226773	1657		3	
IVYPPQLPGEPR	0	Unmodified	1364.7452	0.74523587	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	60.945	60.004	2	0.0002631	51490	160511_QHF_FH_JSI12i_2	85.377	64.507			0.68106	0.72367	37.729	4	1	Median	0.65396	0.54234	58.631	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72875	0.72847	NaN	1	0	Median	0.63649	0.7189	NaN	1	0	Median	147410000	81494000	65917000	52627000	30375000	22252000	0	0	0	60187000	30608000	29578000	34598000	20511000	14087000	26748	5074	25339	167462;167463;167464;167465;167466	226776;226777;226778;226779	226776			4	
IVYPTEK	1	Unmodified	848.46437	0.46436956	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	23.913	21.52	2	0.0091338	17856	160511_QHF_FH_JSI11i_2	80.462	64.83			0.89584	0.95099	10.873	10	2	Median	1.055	0.87321	23.668	2	1	Median	0.80886	0.9577	8.2194	3	1	Plateau	0.92241	0.88932	3.8386	3	0	Plateau	0.93745	1.0178	9.4386	2	0	Median	4792500000	2280400000	2512100000	1154300000	467940000	686340000	1171300000	613330000	557990000	1310700000	660290000	650450000	1156100000	538810000	617300000	26749	2579	25340	167467;167468;167469;167470;167471;167472;167473;167474;167475;167476	226780;226781;226782;226783;226784;226785;226786;226787;226788;226789;226790	226789			11	
IVYSWVIR	0	Unmodified	1034.5913	0.59130141	474	O75110	ATP9A	Probable phospholipid-transporting ATPase IIA	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	16	0									4	1	1	1	1	73.618	64.906	2	0.008583	35232	160513_QHF_FH_JSI11Kac_6	70.67	48.742			0.91917	0.89372	7.5124	4	0	Median	1.0051	0.85761	NaN	1	0	Median	0.68419	0.81002	NaN	1	0	Median	0.94934	0.93135	NaN	1	0	Median	0.88996	0.95318	NaN	1	0	Median	171660000	90196000	81462000	30842000	14174000	16669000	71782000	44366000	27415000	42548000	17905000	24642000	26486000	13751000	12735000	26750	474	25341	167477;167478;167479;167480	226791;226792	226791			2	
IVYYLMNIHVQPR	0	Oxidation (M)	1660.8759	0.87593247	449	O60825;Q16875	PFKFB2;PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	69.903	60.768	3	3.3313E-17	33150	160513_QHF_FH_JSI10Kac_6	139.31	128.36			1.0519	1.1245	32.484	6	1	Median	0.92209	0.78	NaN	1	0	Median	1.3984	1.6865	NaN	1	0	Median	1.2703	1.2033	43.466	2	1	Median	1.0497	1.1245	19.117	2	0	Median	910180000	434760000	475420000	162210000	89060000	73148000	288130000	130850000	157280000	166700000	76990000	89706000	293140000	137860000	155280000	26751	449	25342	167481;167482;167483;167484;167485;167486	226793;226794;226795;226796;226797;226798;226799;226800	226799		178	7	
IVYYLMNIHVQPR	0	Unmodified	1644.881	0.88101784	449	O60825;Q16875	PFKFB2;PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	3	2	1	76.792	68.821	2;3	1.6605E-20	37286	160513_QHF_FH_JSI11Kac_6	141.89	129.97			1.1624	1.2987	54.391	7	3	Median	0.90325	0.76177	NaN	1	0	Median	0.54223	0.64337	51.838	3	2	Median	1.9911	1.9358	24.12	2	1	Median	1.2246	1.2987	NaN	1	0	Median	6196100000	3782200000	2413900000	812350000	557700000	254650000	4285100000	2775400000	1509800000	719480000	274430000	445050000	379160000	174740000	204420000	26752	449	25342	167487;167488;167489;167490;167491;167492;167493	226801;226802;226803;226804;226805;226806;226807	226801			7	
IVYYLMNIHVTPR	0	Unmodified	1617.8701	0.87011881	2775	Q16877	PFKFB4	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	78.7	69.575	3	1.6313E-05	36742	160513_QHF_FH_JSI12Kac_6	83.087	73.299			0.69036	0.74458	49.691	3	3	Median	0.52728	0.44625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3048	1.2054	NaN	1	1	Median	0.69036	0.74458	NaN	1	1	Median	145580000	77266000	68315000	57015000	29646000	27369000	0	0	0	60949000	27419000	33530000	27618000	20202000	7416300	26753	2775	25343	167494;167495;167496	226808;226809;226810	226810			3	
IWADIPAPK	1	Unmodified	1009.5597	0.55966693	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	57.305	56.545	2	0.0029291	51103	160511_QHF_FH_JSI10i_1	62.546	62.546			1.0086	1.0344	15.599	6	0	Median	1.17	0.99523	NaN	1	0	Median	0.88492	1.0456	25.33	2	0	Median	1.0283	1.0242	23.257	2	0	Median	0.9755	1.0751	NaN	1	0	Median	1027700000	528860000	498810000	143480000	67615000	75869000	289320000	166670000	122650000	397660000	198050000	199610000	197200000	96524000	100680000	26754	1659	25344	167497;167498;167499;167500;167501;167502	226811;226812;226813;226814;226815;226816;226817;226818;226819	226813			9	
IWAFNKK	2	Unmodified	905.51232	0.51232281	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			30.984	29.601	3	0.0061963	24235	160511_QHF_FH_JSI9i_3	50.966	12.174			0.9723	0.9268	7.7324	2	0	Median	1.0971	0.87749	NaN	1	0	Median	0.8617	0.97889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	367090000	175290000	191800000	202230000	92942000	109280000	164860000	82346000	82517000	0	0	0	0	0	0	26755	878	25345	167503;167504	226820;226821;226822	226822			3	
IWAHEALR	0	Unmodified	994.53485	0.53484916	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	4	2	24.151	23.961	2;3	0.00070761	19657	160511_QHF_FH_JSI12i_3	69.423	49.946			1.1484	1.2031	34.51	7	1	Median	NaN	NaN	NaN	0	0	Median	0.98897	1.2031	NaN	1	1	Median	1.7429	1.6317	44.628	4	0	Median	1.1302	1.1503	3.2191	2	0	Median	880510000	365980000	514520000	0	0	0	82408000	41837000	40572000	389280000	163880000	225400000	408820000	160270000	248550000	26756	2517	25346	167505;167506;167507;167508;167509;167510;167511;167512	226823;226824;226825;226826;226827;226828;226829;226830	226828			7	
IWAPTAEASTELTGLK	1	Unmodified	1686.8829	0.88285156	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.864	76.022	2	3.1049E-05	67633	160511_QHF_FH_JSI10i_2	99.215	79.972			0.86241	0.91941	7.1935	4	0	Median	1.1469	0.96341	NaN	1	0	Median	0.69388	0.83466	NaN	1	0	Median	0.92734	0.96535	NaN	1	0	Median	0.80203	0.87743	NaN	1	0	Median	107330000	59543000	47791000	22825000	11581000	11244000	25655000	16251000	9403900	36641000	19056000	17585000	22214000	12656000	9558500	26757	2962	25347	167513;167514;167515;167516	226831;226832;226833;226834;226835;226836;226837;226838;226839	226839			9	
IWCFGPDGTGPNILTDITK	1	Unmodified	2104.0299	0.029926505	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		101.42	101.33	2	1.5382E-117	89021	160511_QHF_FH_JSI11i_2	269.36	237.52			0.74845	0.78202	23.919	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93794	1.1187	NaN	1	0	Median	0.73986	0.74548	6.7677	2	0	Median	NaN	NaN	NaN	0	0	Median	1110300000	614420000	495860000	0	0	0	221320000	116230000	105090000	888960000	498180000	390770000	0	0	0	26758	1033	25348	167517;167518;167519	226840;226841;226842	226842			3	
IWDISQPGSK	1	Unmodified	1129.5768	0.57677356	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	44.947	43.812	2	0.060697	37307	160511_QHF_FH_JSI12i_2	33.378	16.138			1.978	1.7388	18.843	3	0	Plateau	1.7475	1.5421	NaN	1	0	Median	1.4397	1.7388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.978	2.2312	NaN	1	0	Median	82862000	36743000	46119000	27782000	13404000	14378000	25329000	10688000	14641000	0	0	0	29751000	12651000	17100000	26759	2220	25349	167520;167521;167522	226843	226843			1	
IWDLEGK	1	Unmodified	859.44397	0.44396847	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4									1	3	2	43.839	43.069	2	0.012734	36524	160511_QHF_FH_JSI12i_2	68.915	19.556			0.68288	0.66446	80.571	5	3	Median	NaN	NaN	NaN	0	0	Median	0.45903	0.55308	NaN	1	1	Median	0.73806	0.73416	14.107	2	2	Median	0.31104	0.3352	139.74	2	0	Median	6549100000	3376900000	3172100000	0	0	0	1261000000	788830000	472160000	3243900000	1519500000	1724300000	2044200000	1068600000	975600000	26760	2061	25350	167523;167524;167525;167526;167527;167528	226844;226845;226846;226847;226848;226849;226850;226851	226845			8	
IWDLQGSEEPVFR	0	Unmodified	1574.7729	0.77290718	3137	Q6RFH5	WDR74	WD repeat-containing protein 74	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.137	74.255	2	0.001335	66068	160511_QHF_FH_JSI10i_2	74.841	54.064			0.69336	0.729	37.7	3	3	Median	NaN	NaN	NaN	0	0	Median	0.35932	0.44122	NaN	1	1	Median	0.92265	0.9231	NaN	1	1	Median	0.69336	0.729	NaN	1	1	Median	65349000	43196000	22153000	0	0	0	20112000	15030000	5082300	28735000	17354000	11381000	16502000	10813000	5689400	26761	3137	25351	167529;167530;167531	226852;226853;226854	226854			3	
IWDPTPSHTPAGAATPGR	0	Unmodified	1830.9013	0.90129559	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.6	0.49		2	3								2	2	1	39.358	38.738	3	2.6894E-07	34007	160511_QHF_FH_JSI11i_3	105.9	89.232			0.91247	0.92522	18.233	5	0	Median	NaN	NaN	NaN	0	0	Median	0.96821	1.1549	20.078	2	0	Median	0.88508	0.85833	1.6402	2	0	Median	0.91438	0.92522	NaN	1	0	Median	391710000	216640000	175060000	0	0	0	157920000	87670000	70249000	170970000	95756000	75211000	62822000	33218000	29604000	26762	542	25352	167532;167533;167534;167535;167536	226855;226856;226857;226858	226856			4	
IWDPVHR	0	Unmodified	921.48209	0.48208531	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	30.146	29.409	3	0.0039309	24538	160511_QHF_FH_JSI10i_3	58.981	48.108			1.1847	1.367	25.803	7	3	Median	1.8411	1.5513	0.88887	2	1	Median	0.99558	1.1861	20.071	2	0	Median	1.335	1.3067	32.904	2	1	Median	0.85391	0.85053	NaN	1	1	Median	592800000	271120000	321680000	77389000	29345000	48044000	146090000	67795000	78295000	213350000	94470000	118880000	155970000	79511000	76458000	26763	1316	25353	167537;167538;167539;167540;167541;167542;167543;167544;167545	226859;226860;226861;226862;226863;226864;226865;226866;226867;226868;226869;226870	226862			12	
IWDSVSLSTLHVLGLGVFDR	0	Unmodified	2213.1845	0.18445331	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.959	87.552	3	9.1498E-26	49247	160513_QHF_FH_JSI11Kac_6	150.69	134.75			0.91139	0.97018	10.852	4	0	Median	1.2985	1.1029	NaN	1	0	Median	0.78985	0.94652	NaN	1	0	Median	1.0375	0.99443	NaN	1	0	Median	0.80065	0.84937	NaN	1	0	Median	1922400000	946490000	975940000	474010000	196190000	277810000	511600000	272220000	239380000	591500000	290000000	301500000	345320000	188070000	157250000	26764	737	25354	167546;167547;167548;167549	226871;226872;226873;226874;226875	226871			5	
IWDTLQK	1	Unmodified	902.48617	0.48616764	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	36.116	35.311	2	0.039266	29992	160511_QHF_FH_JSI12i_2	47.743	10.185			0.91227	0.91867	28.494	5	1	Median	1.0999	0.91867	NaN	1	0	Median	0.69989	0.87817	NaN	1	0	Median	0.8935	0.87936	7.2893	2	1	Median	1.5318	1.6695	NaN	1	0	Median	1287800000	694470000	593330000	225130000	94388000	130740000	298940000	179560000	119380000	536520000	300640000	235880000	227210000	119880000	107330000	26765	1544	25355	167550;167551;167552;167553;167554	226876;226877;226878;226879	226878			4	
IWDTLQKLGAVYDVSHYNALLK	2	Acetyl (K)	2588.3639	0.36387424	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			94.7	88.979	3	1.3278E-05	51215	160513_QHF_FH_JSI10Kac_6	118.24	104.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41349000	41349000	0	0	0	0	41349000	41349000	0	0	0	0	0	0	0	26766	1544	25356	167555	226880	226880	1556		1	
IWDYQNK	1	Unmodified	965.46068	0.46068117	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	26.534	25.784	2	0.0083606	21610	160511_QHF_FH_JSI12i_2	83.801	56.276			1.1718	1.2421	36.921	5	0	Median	1.2859	1.1211	NaN	1	0	Median	1.125	1.3774	NaN	1	0	Median	0.83723	0.83402	56.333	2	0	Median	1.1718	1.2998	NaN	1	0	Median	803010000	373050000	429960000	124190000	57923000	66266000	162110000	76658000	85450000	376470000	177310000	199160000	140240000	61157000	79084000	26767	1438	25357	167556;167557;167558;167559;167560	226881;226882;226883;226884	226881			4	
IWEDLDDDDPK	1	Unmodified	1359.583	0.58304073	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	46.406	45.867	2	0.0092198	41222	160511_QHF_FH_JSI10i_1	48.796	37.306			1.0183	1.1261	21.95	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8179	0.96422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2679	1.3152	NaN	1	0	Median	111580000	58953000	52623000	0	0	0	58556000	36358000	22198000	0	0	0	53019000	22595000	30425000	26768	560	25358	167561;167562	226885;226886	226886			2	
IWEDRNVYPEEMIVALR	0	Unmodified	2132.0725	0.072460022	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	87.428	87.384	3	0.0030686	75762	160511_QHF_FH_JSI12i_3	44.539	38.959			1.0702	1.0719	9.0423	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1518	1.0949	12.67	2	2	Median	1.0702	1.0719	NaN	1	0	Median	102890000	44346000	58547000	0	0	0	0	0	0	49886000	24367000	25520000	53007000	19980000	33027000	26769	2984	25359	167563;167564;167565	226887;226888;226889;226890	226889			4	
IWEPTYTIMYR	0	Unmodified	1471.717	0.71697221	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	78.962	71.366	2	0.048782	37075	160513_QHF_FH_JSI12Kac_6	38.086	18.325			1.029	1.1648	4.4384	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0206	1.2019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0375	1.1288	NaN	1	0	Median	65278000	30331000	34947000	0	0	0	48252000	23487000	24765000	0	0	0	17026000	6843900	10182000	26770	5409	25360	167566;167567	226891;226892	226891			2	
IWEQIQPDLHTNDECVATYK	1	Unmodified	2459.1427	0.14272443	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	64.325	63.545	3	1.4061E-06	56235	160511_QHF_FH_JSI10i_2	95.5	76.121			1.2305	1.407	31.273	4	2	Median	2.2556	1.9679	NaN	1	0	Median	1.3413	1.6252	NaN	1	1	Median	0.97326	0.96835	NaN	1	1	Median	1.129	1.218	NaN	1	0	Median	250190000	108870000	141320000	33602000	12955000	20647000	53679000	22621000	31059000	87135000	49763000	37372000	75774000	23531000	52243000	26771	2323	25361	167568;167569;167570;167571;167572	226893;226894;226895;226896;226897;226898;226899;226900;226901	226899			9	
IWGLGFLPQVSTDLTPQTFSEK	1	Unmodified	2463.2686	0.26857687	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.07	102.08	3	3.0475E-07	88831	160511_QHF_FH_JSI12i_3	95.957	87.805			0.88317	0.87059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88317	0.87059	NaN	1	1	Median	129470000	68907000	60565000	0	0	0	0	0	0	0	0	0	129470000	68907000	60565000	26772	3439	25362	167573	226902	226902			1	
IWGSAQGMDSMLK	1	Unmodified	1422.6636	0.66355643	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	65.421	64.498	2	0.0034844	55450	160511_QHF_FH_JSI12i_2	55.801	32.656			1.2838	1.0808	18.1	3	0	Median	1.2838	1.0808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0129	0.99348	NaN	1	0	Median	1.2927	1.4056	NaN	1	0	Median	117100000	57879000	59219000	22432000	12223000	10209000	0	0	0	55239000	29011000	26228000	39427000	16645000	22782000	26773	5488	25363	167574;167575;167576	226903	226903			1	
IWHHSFYNELR	0	Unmodified	1500.7262	0.72623176	2015	P63267;P62736	ACTG2;ACTA2	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.845				1					33	3	5	8	18	58.889	49.343	3;4	0.00055681	25073	160513_QHF_FH_JSI12Kac_6	57.785	36.928			0.13004	0.14342	32.063	32	31	Linear	0.27162	0.2275	21.342	3	3	Plateau	0.22275	0.26108	33.066	4	4	Median	0.2689	0.26058	23.749	8	8	Median	0.30088	0.32097	36.183	17	16	Median	1858200000	1616700000	241450000	174290000	143990000	30307000	114360000	98032000	16330000	608320000	539460000	68861000	961190000	835230000	125960000	26774	2015	25364	167577;167578;167579;167580;167581;167582;167583;167584;167585;167586;167587;167588;167589;167590;167591;167592;167593;167594;167595;167596;167597;167598;167599;167600;167601;167602;167603;167604;167605;167606;167607;167608;167609;167610	226904;226905;226906;226907;226908;226909;226910;226911;226912;226913;226914;226915;226916;226917;226918;226919;226920;226921;226922;226923;226924;226925;226926;226927;226928;226929;226930;226931;226932;226933;226934;226935;226936;226937	226925			34	
IWHHTFYNELR	0	Unmodified	1514.7419	0.74188183	2062;1916;2070	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.59			88	19					245	123	87	61	81	61.132	53.575	2;3;4	1.3624E-16	22975	160513_QHF_FH_JSI10Kac_6	121.9	92.995			1.1397	1.1562	36.037	294	59	Median	1.1258	0.9527	37.378	103	25	Median	1.0268	1.213	36.741	68	16	Median	1.1744	1.1132	17.562	54	9	Median	1.2261	1.29	23.136	69	9	Median	21515000000	9949800000	11566000000	7004500000	3299400000	3705100000	6073500000	3003500000	3070100000	2845100000	1250100000	1595000000	5592300000	2396800000	3195500000	26775	1916;2062;2070	25365	167611;167612;167613;167614;167615;167616;167617;167618;167619;167620;167621;167622;167623;167624;167625;167626;167627;167628;167629;167630;167631;167632;167633;167634;167635;167636;167637;167638;167639;167640;167641;167642;167643;167644;167645;167646;167647;167648;167649;167650;167651;167652;167653;167654;167655;167656;167657;167658;167659;167660;167661;167662;167663;167664;167665;167666;167667;167668;167669;167670;167671;167672;167673;167674;167675;167676;167677;167678;167679;167680;167681;167682;167683;167684;167685;167686;167687;167688;167689;167690;167691;167692;167693;167694;167695;167696;167697;167698;167699;167700;167701;167702;167703;167704;167705;167706;167707;167708;167709;167710;167711;167712;167713;167714;167715;167716;167717;167718;167719;167720;167721;167722;167723;167724;167725;167726;167727;167728;167729;167730;167731;167732;167733;167734;167735;167736;167737;167738;167739;167740;167741;167742;167743;167744;167745;167746;167747;167748;167749;167750;167751;167752;167753;167754;167755;167756;167757;167758;167759;167760;167761;167762;167763;167764;167765;167766;167767;167768;167769;167770;167771;167772;167773;167774;167775;167776;167777;167778;167779;167780;167781;167782;167783;167784;167785;167786;167787;167788;167789;167790;167791;167792;167793;167794;167795;167796;167797;167798;167799;167800;167801;167802;167803;167804;167805;167806;167807;167808;167809;167810;167811;167812;167813;167814;167815;167816;167817;167818;167819;167820;167821;167822;167823;167824;167825;167826;167827;167828;167829;167830;167831;167832;167833;167834;167835;167836;167837;167838;167839;167840;167841;167842;167843;167844;167845;167846;167847;167848;167849;167850;167851;167852;167853;167854;167855;167856;167857;167858;167859;167860;167861;167862;167863;167864;167865;167866;167867;167868;167869;167870;167871;167872;167873;167874;167875;167876;167877;167878;167879;167880;167881;167882;167883;167884;167885;167886;167887;167888;167889;167890;167891;167892;167893;167894;167895;167896;167897;167898;167899;167900;167901;167902;167903;167904;167905;167906;167907;167908;167909;167910;167911;167912;167913;167914;167915;167916;167917;167918;167919;167920;167921;167922;167923;167924;167925;167926;167927;167928;167929;167930;167931;167932;167933;167934;167935;167936;167937;167938;167939;167940;167941;167942;167943;167944;167945;167946;167947;167948;167949;167950;167951;167952;167953;167954;167955;167956;167957;167958;167959;167960;167961;167962	226938;226939;226940;226941;226942;226943;226944;226945;226946;226947;226948;226949;226950;226951;226952;226953;226954;226955;226956;226957;226958;226959;226960;226961;226962;226963;226964;226965;226966;226967;226968;226969;226970;226971;226972;226973;226974;226975;226976;226977;226978;226979;226980;226981;226982;226983;226984;226985;226986;226987;226988;226989;226990;226991;226992;226993;226994;226995;226996;226997;226998;226999;227000;227001;227002;227003;227004;227005;227006;227007;227008;227009;227010;227011;227012;227013;227014;227015;227016;227017;227018;227019;227020;227021;227022;227023;227024;227025;227026;227027;227028;227029;227030;227031;227032;227033;227034;227035;227036;227037;227038;227039;227040;227041;227042;227043;227044;227045;227046;227047;227048;227049;227050;227051;227052;227053;227054;227055;227056;227057;227058;227059;227060;227061;227062;227063;227064;227065;227066;227067;227068;227069;227070;227071;227072;227073;227074;227075;227076;227077;227078;227079;227080;227081;227082;227083;227084;227085;227086;227087;227088;227089;227090;227091;227092;227093;227094;227095;227096;227097;227098;227099;227100;227101;227102;227103;227104;227105;227106;227107;227108;227109;227110;227111;227112;227113;227114;227115;227116;227117;227118;227119;227120;227121;227122;227123;227124;227125;227126;227127;227128;227129;227130;227131;227132;227133;227134;227135;227136;227137;227138;227139;227140;227141;227142;227143;227144;227145;227146;227147;227148;227149;227150;227151;227152;227153;227154;227155;227156;227157;227158;227159;227160;227161;227162;227163;227164;227165;227166;227167;227168;227169;227170;227171;227172;227173;227174;227175;227176;227177;227178;227179;227180;227181;227182;227183;227184;227185;227186;227187;227188;227189;227190;227191;227192;227193;227194;227195;227196;227197;227198;227199;227200;227201;227202;227203;227204;227205;227206;227207;227208;227209;227210;227211;227212;227213;227214;227215;227216;227217;227218;227219;227220;227221;227222;227223;227224;227225;227226;227227;227228;227229;227230;227231;227232;227233;227234;227235;227236;227237;227238;227239;227240;227241;227242;227243;227244;227245;227246;227247;227248;227249;227250;227251;227252;227253;227254;227255;227256;227257;227258;227259;227260;227261;227262;227263;227264;227265;227266;227267;227268;227269;227270;227271;227272;227273;227274;227275;227276;227277;227278;227279;227280;227281;227282;227283;227284;227285;227286;227287;227288;227289;227290;227291;227292;227293;227294;227295;227296;227297;227298;227299;227300;227301;227302;227303;227304;227305;227306;227307;227308;227309;227310;227311;227312;227313	227300			349	
IWHPNISSVTGAICLDILK	1	Unmodified	2136.1401	0.14014566	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.18	101.19	3	1.7654E-06	87826	160511_QHF_FH_JSI12i_3	99.059	85.018			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84486000	0	84486000	0	0	0	0	0	0	0	0	0	84486000	0	84486000	26776	1936	25366	167963	227314	227314			1	
IWHTQLLPGGLQGLILNPIFR	0	Unmodified	2385.3685	0.36850611	3880	Q92759	GTF2H4	General transcription factor IIH subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	96.786	88.377	3	2.9104E-13	50000	160513_QHF_FH_JSI9Kac_6	111.45	88.117			0.9774	0.93657	12.39	4	0	Median	1.102	0.93562	NaN	1	0	Median	0.79105	0.93752	NaN	1	0	Median	1.2434	1.1946	NaN	1	0	Median	0.86687	0.92495	NaN	1	0	Median	1359100000	735570000	623570000	223400000	103210000	120180000	780740000	461960000	318780000	257180000	112950000	144230000	97828000	57442000	40386000	26777	3880	25367	167964;167965;167966;167967	227315;227316;227317	227316			3	
IWHYTGSILHK	1	Unmodified	1353.7194	0.71935547	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			14						8	7	9	3	3	47.906	43.746	2;3;4	1.681E-08	23253	160513_QHF_FH_JSI10Kac_6	117.25	103.85			0.91396	0.92091	26.809	19	4	Median	1.2749	1.0665	19.322	6	0	Median	0.82228	0.92091	21.341	7	3	Median	0.94249	0.88581	41.217	3	1	Median	0.66246	0.68401	24.172	3	0	Median	1562100000	847230000	714860000	377960000	144380000	233580000	782200000	478410000	303790000	144570000	74873000	69701000	257350000	149570000	107790000	26778	4535	25368	167968;167969;167970;167971;167972;167973;167974;167975;167976;167977;167978;167979;167980;167981;167982;167983;167984;167985;167986;167987;167988;167989	227318;227319;227320;227321;227322;227323;227324;227325;227326;227327;227328;227329;227330;227331;227332;227333;227334;227335;227336;227337;227338;227339;227340;227341;227342;227343	227342			25	
IWLAAHWDK	1	Unmodified	1138.5924	0.59236404	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	5	2	2	3	61.067	56.068	3	6.4923E-06	47862	160511_QHF_FH_JSI12i_3	93.111	76.908			1.0571	1.0303	14.653	8	1	Median	1.0457	0.87354	10.505	2	1	Median	0.81363	0.93814	14.579	2	0	Median	1.1757	1.1161	12.646	2	0	Median	1.0977	1.1376	2.6986	2	0	Median	704900000	339340000	365570000	113650000	53208000	60444000	159440000	95631000	63805000	223500000	96376000	127120000	208320000	94123000	114190000	26779	396	25369	167990;167991;167992;167993;167994;167995;167996;167997;167998;167999;168000;168001	227344;227345;227346;227347;227348;227349;227350;227351;227352;227353;227354;227355;227356;227357;227358;227359;227360;227361;227362;227363;227364;227365;227366;227367;227368	227362			25	
IWLGLFDAR	0	Unmodified	1089.5971	0.59711507	642	O95081	AGFG2	Arf-GAP domain and FG repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	87.227	78.197	2	0.013254	43220	160513_QHF_FH_JSI9Kac_6	54.157	32.62			1.2414	1.1977	13.728	2	0	Median	1.259	1.0869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2241	1.3198	NaN	1	0	Median	72588000	31355000	41233000	48808000	19413000	29395000	0	0	0	0	0	0	23779000	11942000	11837000	26780	642	25370	168002;168003	227369	227369			1	
IWLVDSK	1	Unmodified	859.48035	0.48035398	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	51.445	50.314	2	0.037612	43993	160511_QHF_FH_JSI9i_2	48.561	14.558			0.77827	0.91987	13.332	3	0	Median	1.0742	0.91987	NaN	1	0	Median	0.77827	0.93585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65317	0.73687	NaN	1	0	Median	398930000	209170000	189770000	88630000	42469000	46161000	155540000	78895000	76648000	0	0	0	154760000	87803000	66957000	26781	1616	25371	168004;168005;168006	227370	227370			1	
IWNALVTALQK	1	Unmodified	1255.7289	0.72885752	3034	Q6AI08	HEATR6	HEAT repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	80.401	79.951	2	0.0011845	69416	160511_QHF_FH_JSI12i_3	77.192	50.062			0.95173	1.0019	80.535	4	4	Median	NaN	NaN	NaN	0	0	Median	0.4544	0.53476	NaN	1	1	Median	1.9934	1.8772	NaN	1	1	Median	0.99543	0.97275	107.54	2	2	Median	100350000	46070000	54284000	0	0	0	17416000	11621000	5795100	22140000	6093100	16047000	60798000	28357000	32441000	26782	3034	25372	168007;168008;168009;168010	227371;227372;227373;227374;227375	227374			5	
IWNLSENSTSGSTQLVLR	0	Unmodified	2004.0276	0.027618319	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	74.731	74.442	2	1.1756E-05	64666	160511_QHF_FH_JSI12i_3	125.61	103.57			0.90397	0.95256	34.928	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90397	0.95256	34.928	2	2	Median	45338000	23713000	21624000	0	0	0	0	0	0	0	0	0	45338000	23713000	21624000	26783	4568	25373	168011;168012	227376;227377	227377			2	
IWNSSLQTNK	1	Unmodified	1189.6091	0.60913632	1555	P43155	CRAT	Carnitine O-acetyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.971	28.917	2	0.041969	24290	160511_QHF_FH_JSI12i_3	44.863	25.077			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17793000	0	17793000	0	0	0	0	0	0	0	0	0	17793000	0	17793000	26784	1555	25374	168013	227378	227378			1	
IWNVHSVLNVLHSLVDK	1	Unmodified	1972.0894	0.089430715	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	2	3	4	2	96.71	90.086	2;3;4	9.8936E-84	46929	160513_QHF_FH_JSI12Kac_6	219.01	198.62			0.87296	0.95606	20.743	11	2	Median	1.1791	1.0015	12.548	2	0	Median	0.83951	0.97599	2.009	3	0	Median	0.98885	0.94018	22.114	4	2	Median	0.68499	0.71694	34.451	2	0	Median	11296000000	5525000000	5771400000	1478300000	692390000	785900000	5138400000	2433000000	2705400000	2598400000	1249800000	1348600000	2081200000	1149800000	931450000	26785	5494	25375	168014;168015;168016;168017;168018;168019;168020;168021;168022;168023;168024	227379;227380;227381;227382;227383;227384;227385;227386;227387;227388;227389;227390;227391;227392;227393;227394;227395	227388			17	
IWNVIYEENCFKPQTIK	2	Unmodified	2181.0929	0.092861113	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.031	75.755	3	0.0003169	65666	160511_QHF_FH_JSI12i_3	71.697	56.769			0.80884	0.80922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80884	0.80922	NaN	1	1	Median	46092000	25508000	20585000	0	0	0	0	0	0	0	0	0	46092000	25508000	20585000	26786	4109	25376	168025	227396;227397	227396			2	
IWPGYSELPAVK	1	Unmodified	1358.7234	0.72343779	1187	P21127	CDK11B	Cyclin-dependent kinase 11B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	3	1	1	58.111	56.902	2;3	0.012654	63332	160511_QHF_FH_JSI12i_2	54.608	32.078			0.94707	1.0743	10.284	6	2	Median	1.6213	1.3041	NaN	1	0	Median	0.94707	1.062	1.3351	3	0	Plateau	0.93153	0.95604	NaN	1	1	Median	1.0514	1.1454	NaN	1	1	Median	402230000	218410000	183810000	59172000	27532000	31640000	247140000	137050000	110090000	57911000	35238000	22673000	38001000	18589000	19412000	26787	1187	25377	168026;168027;168028;168029;168030;168031	227398;227399;227400;227401	227398			4	
IWPLFPVFHQFLEQSK	1	Unmodified	2015.0669	0.066904359	3845	Q92564	DCUN1D4	DCN1-like protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	98.059	89.869	3	8.647E-05	52494	160513_QHF_FH_JSI10Kac_6	78.234	66.973			0.72869	0.86168	36.036	3	1	Median	NaN	NaN	NaN	0	0	Median	0.72869	0.86168	NaN	1	0	Median	1.3276	1.2826	NaN	1	1	Median	0.59445	0.62471	NaN	1	0	Median	339520000	179800000	159720000	0	0	0	129130000	82921000	46214000	103410000	43822000	59590000	106970000	53053000	53920000	26788	3845	25378	168032;168033;168034	227402;227403;227404	227403			3	
IWPLYLR	0	Unmodified	959.55927	0.559273	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	78.832	77.82	2	0.018384	67508	160511_QHF_FH_JSI12i_3	60.001	37.379			0.75525	0.84044	11.429	3	0	Median	1.1509	0.94877	NaN	1	0	Median	0.73673	0.84044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75525	0.75501	NaN	1	0	Median	149560000	82853000	66708000	41690000	18891000	22798000	31980000	19028000	12951000	0	0	0	75892000	44934000	30958000	26789	4863	25379	168035;168036;168037	227405	227405			1	
IWPYVYAFLQTK	1	Unmodified	1527.8126	0.81258715	5333	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.424	85.073	2	3.1525E-05	47495	160513_QHF_FH_JSI9Kac_6	96.015	79.761			0.87138	0.93227	31.77	4	2	Median	1.2203	1.0429	NaN	1	0	Median	0.7971	0.93754	NaN	1	0	Median	0.95259	0.92703	NaN	1	1	Median	0.48692	0.51725	NaN	1	1	Median	434360000	235880000	198480000	99854000	47345000	52510000	170820000	94051000	76774000	97738000	47470000	50268000	65942000	47011000	18932000	26790	5333	25380	168038;168039;168040;168041	227406;227407;227408;227409;227410;227411	227407			6	
IWPYVYTLFSNK	1	Unmodified	1529.7919	0.79185171	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	1	2	3	2	96.744	92.563	2	4.3501E-12	46781	160513_QHF_FH_JSI11Kac_6	123.75	68.199			1.0199	0.99084	18.555	8	4	Median	1.3193	1.1211	NaN	1	0	Median	0.98386	1.1644	22.435	2	1	Median	1.0452	0.9881	10.641	3	2	Median	0.75664	0.79615	4.4364	2	1	Median	2412200000	1088700000	1323500000	409510000	171550000	237950000	861560000	389480000	472090000	719010000	321740000	397270000	422100000	205950000	216150000	26791	1287	25381	168042;168043;168044;168045;168046;168047;168048;168049	227412;227413;227414;227415;227416;227417;227418;227419;227420;227421;227422;227423	227415			12	
IWQYVYSK	1	Unmodified	1085.5546	0.55458155	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.15		2					2	3	4	2	4	3	2	55.803	46.588	2	0.0017307	25053	160513_QHF_FH_JSI11Kac_6	96.492	27.059			0.92912	0.98568	13.149	10	1	Median	0.96939	0.8315	24.165	2	1	Median	0.76902	0.92152	12.867	3	0	Median	1.0062	1.0091	8.4003	3	0	Median	0.93956	1.0115	1.1698	2	0	Median	1862400000	927830000	934560000	773680000	458990000	314690000	474100000	193920000	280180000	394030000	168710000	225320000	220600000	106220000	114380000	26792	1524;1941	25382	168050;168051;168052;168053;168054;168055;168056;168057;168058;168059;168060	227424;227425;227426;227427;227428;227429;227430;227431;227432;227433;227434;227435;227436;227437	227424			14	
IWSEPFYQETYLPYMIR	0	Unmodified	2235.0711	0.071063038	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.75	4.63		7							1	2	2	2	2	100.48	99.215	2;3	2.4276E-52	89229	160511_QHF_FH_JSI9i_2	267.23	242.67			1.2549	1.27	21.849	8	0	Median	1.365	1.1735	25.64	2	0	Median	1.1116	1.3646	29.45	2	0	Median	1.2503	1.2585	12.982	2	0	Median	1.3686	1.4729	32.652	2	0	Median	2323600000	1091200000	1232400000	607590000	271480000	336110000	616470000	320990000	295480000	667450000	290290000	377170000	432090000	208460000	223630000	26793	2094	25383	168061;168062;168063;168064;168065;168066;168067;168068	227438;227439;227440;227441;227442;227443	227439			6	
IWSVPNASCVQVVR	0	Unmodified	1613.8348	0.83479593	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	3	2	2	68.886	68.117	2	1.242E-10	60629	160511_QHF_FH_JSI11i_3	154.24	115.67			1.0932	1.1875	21.335	8	3	Median	1.3431	1.1695	NaN	1	0	Median	0.98956	1.2058	6.7584	3	2	Median	0.97917	0.96444	22.305	2	1	Median	1.4583	1.5254	21.857	2	0	Median	723420000	331470000	391950000	57943000	25943000	32000000	207620000	97921000	109700000	237350000	120030000	117320000	220500000	87571000	132930000	26794	5426	25384	168069;168070;168071;168072;168073;168074;168075;168076	227444;227445;227446;227447;227448;227449;227450;227451;227452;227453;227454;227455	227445			12	
IWTHPGWSPLK	1	Unmodified	1320.6979	0.69789175	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			9						3	4	3	3	2	58.99	55.945	2;3	3.9719E-08	46301	160511_QHF_FH_JSI9i_3	113.69	93.925			0.91073	0.872	14.111	11	2	Median	1.0145	0.86421	7.0671	3	1	Median	0.66594	1.0102	17.263	3	1	Plateau	0.91073	0.86026	19.317	3	0	Plateau	0.84612	0.87263	0.10206	2	0	Median	1280800000	647230000	633550000	218090000	99146000	118950000	225020000	124820000	100190000	310540000	155810000	154730000	527130000	267450000	259680000	26795	308	25385	168077;168078;168079;168080;168081;168082;168083;168084;168085;168086;168087;168088	227456;227457;227458;227459;227460;227461;227462;227463;227464;227465;227466;227467;227468;227469;227470;227471;227472;227473;227474;227475	227464			20	
IWVELKK	2	Unmodified	914.55894	0.55893865	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	41.767	40.941	3	0.0061844	34766	160511_QHF_FH_JSI12i_3	54.549	54.549			2.6571	2.7939	80.907	4	2	Median	9.8134	8.0553	NaN	1	1	Median	3.6008	4.1757	NaN	1	1	Median	1.9607	1.8694	NaN	1	0	Median	1.34	1.3351	NaN	1	0	Median	194020000	75606000	118410000	20593000	2324700	18268000	32663000	15847000	16815000	36643000	13757000	22886000	104120000	43677000	60442000	26796	4204	25386	168089;168090;168091;168092	227476;227477;227478;227479	227479			4	
IWVFGGANQSGNR	0	Unmodified	1404.6898	0.68984626	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			64.594	56.426	2	0.029528	31072	160513_QHF_FH_JSI10Kac_6	43.512	32.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26797	3289	25387	168093	227480	227480			1	
IWVIFNFLSEDK	1	Unmodified	1509.7868	0.78676633	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	97.32	88.901	2	1.6748E-19	50391	160513_QHF_FH_JSI9Kac_6	158.79	127.3			1.1341	1.0385	36.522	4	1	Median	1.0151	0.87406	NaN	1	0	Median	0.51234	0.60867	NaN	1	1	Median	1.295	1.2338	NaN	1	0	Median	1.2669	1.3601	NaN	1	0	Median	724810000	348500000	376310000	232990000	109070000	123920000	162510000	91656000	70859000	239240000	99211000	140030000	90068000	48560000	41508000	26798	5289	25388	168094;168095;168096;168097;168098	227481;227482;227483;227484;227485;227486;227487;227488	227483			8	
IWVLQHLAK	1	Unmodified	1106.66	0.66004968	3287	Q7Z6K3	PTAR1	Protein prenyltransferase alpha subunit repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	3	2	1	62.362	57.618	3	3.1875E-05	49089	160511_QHF_FH_JSI12i_3	90.657	81.263			0.87801	0.92462	45.166	8	3	Median	1.0364	0.878	15.069	2	0	Median	0.78306	0.91609	47.461	3	2	Median	0.59913	0.57609	76.539	2	1	Median	1.1176	1.1294	NaN	1	0	Median	216770000	116510000	100260000	35131000	15284000	19847000	76683000	46325000	30358000	49096000	29272000	19824000	55859000	25626000	30232000	26799	3287	25389	168099;168100;168101;168102;168103;168104;168105;168106	227489;227490;227491;227492;227493;227494;227495;227496	227494			8	
IWVNEETK	1	Unmodified	1017.5131	0.51311067	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	30.134	28.825	2	0.052344	24221	160511_QHF_FH_JSI12i_2	36.76	10.821			0.57332	0.62681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57332	0.62681	NaN	1	0	Median	37264000	17580000	19685000	0	0	0	0	0	0	0	0	0	37264000	17580000	19685000	26800	3308	25390	168107	227497	227497			1	
IWVNISLSGIK	1	Unmodified	1228.718	0.71795849	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	86.12	81.759	2	0.0027836	41554	160513_QHF_FH_JSI9Kac_6	68.557	31.864			1.4523	1.3201	36.518	2	1	Median	1.2152	1.0197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7357	1.709	NaN	1	1	Median	234180000	97721000	136460000	206630000	85911000	120720000	0	0	0	0	0	0	27550000	11810000	15740000	26801	2137	25391	168108;168109	227498;227499;227500	227498			3	
IWYGTGLTFVSGLK	1	Unmodified	1540.829	0.8289655	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	91.336	86.427	2;3	1.7604E-45	43974	160513_QHF_FH_JSI11Kac_6	196.76	173.44			0.98636	0.94148	14.555	14	0	Median	1.1092	0.93701	4.5295	4	0	Median	0.8049	0.94236	18.604	4	0	Median	1.0698	1.0071	12.686	3	0	Median	0.77605	0.77187	2.8107	3	0	Plateau	2458900000	1301100000	1157900000	506750000	268920000	237830000	965730000	541790000	423940000	586050000	265700000	320350000	400410000	224680000	175740000	26802	228	25392	168110;168111;168112;168113;168114;168115;168116;168117;168118;168119;168120;168121;168122;168123	227501;227502;227503;227504;227505;227506;227507;227508;227509;227510;227511;227512;227513;227514;227515;227516;227517;227518;227519;227520;227521;227522	227507			22	
IWYLLDGK	1	Unmodified	1006.5488	0.54876789	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	73.85	72.962	2	0.004596	63051	160511_QHF_FH_JSI12i_2	68.214	49.89			1.1256	1.3605	6.781	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1256	1.3605	NaN	1	0	Median	1.3099	1.2884	NaN	1	0	Median	1.0584	1.1889	NaN	1	0	Median	193800000	105960000	87847000	0	0	0	73498000	32629000	40869000	65199000	42409000	22790000	55108000	30920000	24189000	26803	4543	25393	168124;168125;168126	227523;227524;227525	227523			3	
IYADTFGDINYQEFAK	1	Unmodified	1893.8785	0.87849447	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	84.019	83.556	2;3	2.6841E-30	75812	160511_QHF_FH_JSI10i_1	193.15	165.72			0.92766	0.89748	9.4664	8	2	Median	1.002	0.8239	14.636	2	2	Median	0.72587	0.86566	2.5674	2	0	Median	0.98365	0.95138	1.228	2	0	Median	0.88016	0.90557	13.33	2	0	Median	562360000	286780000	275570000	136450000	58839000	77616000	194750000	115300000	79452000	116600000	57081000	59515000	114550000	55564000	58988000	26804	2609	25394	168127;168128;168129;168130;168131;168132;168133;168134;168135	227526;227527;227528;227529;227530;227531;227532;227533;227534;227535;227536;227537;227538;227539;227540;227541;227542;227543	227537			18	
IYAEDPSNNFMPVAGPLVHLSTPR	0	Unmodified	2624.3057	0.30570743	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	92.443	91.85	3	1.5383E-07	81398	160511_QHF_FH_JSI10i_2	65.213	58.182			0.69202	0.82097	44.029	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91238	1.1208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52487	0.60134	NaN	1	0	Median	56885000	35615000	21270000	0	0	0	21366000	10773000	10593000	0	0	0	35519000	24842000	10677000	26805	4223	25395	168136;168137;168138	227544;227545;227546;227547	227546			4	
IYALPDDLVEVKPK	2	Unmodified	1598.892	0.89195969	2551	Q14651	PLS1	Plastin-1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	73.627	72.352	3	0.00084388	62475	160511_QHF_FH_JSI12i_2	69.716	39.735			0.80434	0.86384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80434	0.86384	NaN	1	1	Median	25912000	14672000	11240000	0	0	0	0	0	0	0	0	0	25912000	14672000	11240000	26806	2551	25396	168139	227548	227548			1	
IYAMHWGTDSR	0	Unmodified	1335.603	0.60300508	2032;2030	P62873;P62879	GNB1;GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.79	6.64		4	9						11	6	6	8	4	45.569	40.518	2;3	2.8457E-07	22069	160513_QHF_FH_JSI10Kac_6	129.1	117.95			1.0383	1.1074	14.248	20	0	Median	1.3878	1.1739	19.658	5	0	Median	0.94172	1.0978	7.4889	5	0	Median	1.2452	1.1656	13.705	6	0	Median	0.94285	0.95308	12.146	4	0	Median	2675600000	1288900000	1386700000	478000000	156690000	321300000	842420000	440380000	402040000	824860000	412730000	412130000	530320000	279090000	251230000	26807	2030;2032	25397	168140;168141;168142;168143;168144;168145;168146;168147;168148;168149;168150;168151;168152;168153;168154;168155;168156;168157;168158;168159;168160;168161;168162;168163	227549;227550;227551;227552;227553;227554;227555;227556;227557;227558;227559;227560;227561;227562;227563;227564;227565;227566;227567;227568;227569;227570;227571;227572;227573;227574;227575;227576;227577;227578;227579;227580;227581;227582;227583;227584;227585;227586;227587	227587			39	
IYAMHWGYDSR	0	Unmodified	1397.6187	0.61865515	4830	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.84	6.49			9						10	3	4	6	6	54.116	48.889	2;3	1.2639E-09	26637	160513_QHF_FH_JSI10Kac_6	129.1	118.58			1.1348	1.0681	13.842	15	2	Median	1.2017	1.0275	8.1165	3	0	Median	0.83132	0.97627	3.8586	3	0	Median	1.3152	1.2539	13.239	4	1	Median	0.99164	1.0823	14.64	5	1	Median	1693900000	873220000	820660000	220000000	109720000	110280000	695630000	382540000	313090000	354070000	171370000	182700000	424190000	209590000	214590000	26808	4830	25398	168164;168165;168166;168167;168168;168169;168170;168171;168172;168173;168174;168175;168176;168177;168178;168179;168180;168181;168182	227588;227589;227590;227591;227592;227593;227594;227595;227596;227597;227598;227599;227600;227601;227602;227603;227604;227605;227606;227607;227608;227609;227610;227611;227612;227613;227614;227615;227616;227617;227618;227619;227620	227619			33	
IYAMHWGYDSR	0	Oxidation (M)	1413.6136	0.61356977	4830	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	43.404	34.312	3	0.0047763	18050	160513_QHF_FH_JSI12Kac_6	45.257	41.935			1.1724	0.97805	15.796	3	1	Plateau	1.1724	0.97805	NaN	1	0	Median	0.9871	1.1601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2358	1.3409	NaN	1	0	Median	50040000	21794000	28246000	14956000	6137600	8818300	23775000	10929000	12847000	0	0	0	11309000	4727300	6581300	26809	4830	25398	168183;168184;168185	227621;227622;227623	227622		2534	2	
IYANFFPYGDASK	1	Unmodified	1491.7034	0.70343063	1468	P37235;P84074	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	5.42	4	4						2		3	2	3	2	74.897	72.242	2	1.0363E-05	64068	160511_QHF_FH_JSI11i_2	124.42	105.29			1.0199	1.0676	62.271	10	4	Median	1.1636	0.96488	90.503	3	1	Median	0.47629	0.56947	95.278	2	1	Median	1.08	1.0932	31.286	3	1	Median	1.1065	1.1898	18.664	2	1	Median	647260000	364770000	282490000	91170000	55560000	35610000	162240000	104610000	57630000	246780000	129070000	117710000	147070000	75534000	71538000	26810	1468	25399	168186;168187;168188;168189;168190;168191;168192;168193;168194;168195	227624;227625;227626;227627;227628;227629;227630;227631;227632;227633;227634;227635;227636;227637;227638;227639	227636			16	
IYAPEAPYTSHDK	1	Unmodified	1490.7042	0.70415892	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.6	5.2		4						1		1	1	2	1	33.73	32.837	3	0.0024057	28527	160511_QHF_FH_JSI9i_2	48.177	38.728			1.0146	1.0182	18.08	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1182	1.3751	NaN	1	0	Median	1.0146	0.99406	NaN	1	0	Median	0.90444	1.0182	NaN	1	0	Median	359960000	186590000	173380000	0	0	0	114130000	62344000	51783000	152590000	76968000	75625000	93243000	47276000	45967000	26811	2789	25400	168196;168197;168198;168199;168200	227640;227641;227642;227643	227640			4	
IYAPEAPYTSPDK	1	Unmodified	1450.698	0.6980109	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				46.131	44.906	2	0.00045717	39958	160511_QHF_FH_JSI9i_1	91.855	73.99			1.58	1.34	NaN	1	1	Median	1.58	1.34	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64953000	27558000	37395000	64953000	27558000	37395000	0	0	0	0	0	0	0	0	0	26812	4988	25401	168201	227644	227644			1	
IYAPLYLIAAILR	0	Unmodified	1488.9068	0.90682189	3321	Q86UB9	TMEM135	Transmembrane protein 135	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		101.24	93.789	2	7.292E-08	56306	160513_QHF_FH_JSI10Kac_6	108.98	87.514			1.0456	1.0549	12.305	2	0	Median	1.1231	0.96702	NaN	1	0	Median	0.97337	1.1508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246650000	122320000	124320000	117420000	54272000	63143000	129230000	68053000	61178000	0	0	0	0	0	0	26813	3321	25402	168202;168203;168204	227645;227646;227647;227648	227647			4	
IYAPLYLIAAILRK	1	Unmodified	1617.0018	0.0017849065	3321	Q86UB9	TMEM135	Transmembrane protein 135	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	98.777	89.496	3	1.6385E-07	51458	160513_QHF_FH_JSI9Kac_6	113.77	94.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26814	3321	25403	168205;168206;168207;168208	227649;227650;227651;227652	227651			4	
IYAPQGLLLTDPIER	0	Unmodified	1697.9352	0.93522148	3280	Q7Z5G4	GOLGA7	Golgin subfamily A member 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	89.898	89.494	2;3	0.001012	78779	160511_QHF_FH_JSI9i_2	79.741	64.768			1.2192	1.0497	NaN	1	1	Median	1.2192	1.0497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11787000	3863300	7923200	11787000	3863300	7923200	0	0	0	0	0	0	0	0	0	26815	3280	25404	168209;168210;168211;168212	227653;227654;227655;227656	227655			4	
IYAVEASTMAQHAEVLVK	1	Unmodified	1959.0135	0.013548159	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.231	70.621	3	0.013472	61791	160511_QHF_FH_JSI11i_2	36.679	21.757			1.7234	1.7397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7234	1.7397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	113520000	42862000	70657000	0	0	0	0	0	0	113520000	42862000	70657000	0	0	0	26816	3371	25405	168213	227657	227657			1	
IYAYPSNITSETGFR	0	Unmodified	1717.8312	0.83115034	3461	Q8IY95	TMEM192	Transmembrane protein 192	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.667	64.743	2	0.002739	57432	160511_QHF_FH_JSI10i_2	69.349	45.744			1.0046	1.065	32.212	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84218	0.84807	NaN	1	0	Median	1.1983	1.3374	NaN	1	1	Median	48649000	19463000	29185000	8579600	0	8579600	0	0	0	24532000	12066000	12466000	15537000	7396900	8139900	26817	3461	25406	168214;168215;168216;168217	227658;227659;227660;227661;227662	227662			5	
IYDALDVSLIER	0	Unmodified	1405.7453	0.74529545	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.045	79.893	2	0.036832	69034	160511_QHF_FH_JSI12i_2	56.359	37.579			0.52363	0.58766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52363	0.58766	NaN	1	1	Median	85345000	54531000	30814000	0	0	0	0	0	0	0	0	0	85345000	54531000	30814000	26818	1818	25407	168218	227663	227663			1	
IYDDDFFQNLDGVANALDNVDAR	0	Unmodified	2599.1827	0.18267499	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									2	1	1	101.88	101.81	3	1.1063E-19	92587	160511_QHF_FH_JSI10i_1	145.13	142.41			1.013	1.0532	13.102	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97508	1.1617	17.283	2	0	Median	1.0118	0.97086	NaN	1	0	Median	1.0142	1.0789	NaN	1	0	Median	931980000	473290000	458690000	0	0	0	490530000	241210000	249310000	108520000	57728000	50794000	332930000	174350000	158580000	26819	1208	25408	168219;168220;168221;168222	227664;227665	227665			2	
IYDDYYPDLK	1	Unmodified	1303.5972	0.59723423	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.086	54.425	2	0.0015256	49431	160511_QHF_FH_JSI12i_1	65.347	56.133			1.305	1.3604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.305	1.3604	NaN	1	0	Median	94459000	36806000	57653000	0	0	0	0	0	0	0	0	0	94459000	36806000	57653000	26820	2080	25409	168223	227666	227666			1	
IYDLNKPEAEPK	2	Unmodified	1415.7296	0.72964538	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.64	3	7	2							1	4	4	3	29.666	29.066	2;3	1.8377E-06	24599	160511_QHF_FH_JSI11i_2	129.84	98.764			0.76368	0.7873	29.091	12	3	Median	0.92828	0.77389	NaN	1	0	Median	0.71483	0.8761	28.954	4	1	Median	0.76368	0.7717	29.496	4	0	Median	0.72029	0.80904	44.402	3	2	Median	3825200000	1967700000	1857500000	594240000	217040000	377200000	1014000000	535500000	478470000	1361800000	750670000	611160000	855150000	464440000	390710000	26821	5595	25410	168224;168225;168226;168227;168228;168229;168230;168231;168232;168233;168234;168235	227667;227668;227669;227670;227671;227672;227673;227674;227675;227676;227677;227678;227679;227680;227681;227682;227683;227684;227685	227681			19	
IYDPQEGAVVVLPADSQQR	0	Unmodified	2084.0538	0.05383307	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	65.963	65.27	3	4.6191E-05	57954	160511_QHF_FH_JSI9i_1	64.723	55.308			1.0867	1.1203	10.945	3	1	Median	1.3792	1.1203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98117	0.94149	NaN	1	0	Median	1.0867	1.1524	NaN	1	1	Median	147520000	79579000	67944000	51800000	25212000	26588000	0	0	0	46416000	27995000	18421000	49307000	26372000	22935000	26822	5106	25411	168236;168237;168238	227686;227687;227688	227688			3	
IYDREQTR	0	Unmodified	1079.536	0.53597137	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.67	0.471		3	6							3	3	2	1	5.7288	5.3974	2;3	0.0014141	3315	160511_QHF_FH_JSI10i_3	66.692	39.438			1.073	1.1296	21.444	9	0	Median	1.41	1.1683	8.8688	3	0	Plateau	0.9186	1.0796	6.667	3	0	Median	1.1021	1.0675	7.9915	2	0	Median	0.62854	0.6475	NaN	1	0	Median	2030900000	1064800000	966110000	701770000	320020000	381750000	1127800000	643480000	484360000	177430000	88069000	89360000	23820000	13186000	10635000	26823	1600	25412	168239;168240;168241;168242;168243;168244;168245;168246;168247	227689;227690;227691;227692;227693;227694	227689			6	
IYEAPDVMNLSQWSLQHEISCK	1	Unmodified	2647.2411	0.24105827	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	1	3	93.341	92.869	3	5.8988E-05	80193	160511_QHF_FH_JSI12i_2	58.366	51.006			0.97937	1.2208	51.491	5	3	Plateau	NaN	NaN	NaN	0	0	Median	0.98204	1.2208	NaN	1	0	Median	0.97671	0.99847	NaN	1	0	Median	1.1246	1.2868	59.645	3	3	Plateau	150480000	72339000	78138000	0	0	0	30380000	13340000	17040000	34524000	19286000	15238000	85573000	39713000	45860000	26824	4042	25413	168248;168249;168250;168251;168252	227695;227696;227697;227698;227699;227700;227701	227696			7	
IYEDGDDDMK	1	Oxidation (M)	1215.4601	0.4601484	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	13.946	13.53	2	0.0006743	7812	160511_QHF_FH_JSI10i_1	95.608	88.388			1.0536	1.1133	65.7	9	1	Median	1.0783	0.88138	42.658	2	0	Median	1.2036	1.393	99.404	3	1	Median	1.0177	0.9866	2.1048	2	0	Median	1.1131	1.1745	7.5609	2	0	Median	1507400000	670610000	836790000	256010000	108460000	147540000	476740000	192460000	284280000	339310000	152480000	186840000	435330000	217200000	218130000	26825	4837	25414	168253;168254;168255;168256;168257;168258;168259;168260;168261	227702;227703;227704;227705;227706;227707;227708;227709;227710;227711	227709		2538	10	
IYEDGDDDMK	1	Unmodified	1199.4652	0.46523378	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	19.556	17.737	2	1.0361E-07	15289	160511_QHF_FH_JSI10i_1	122.13	117.17			0.99847	1.0449	16.821	5	0	Median	1.4789	1.2038	NaN	1	0	Median	0.7644	0.90229	NaN	1	0	Median	0.99847	0.97259	NaN	1	0	Median	1.12	1.1973	19.244	2	0	Median	3268400000	1517500000	1750900000	663680000	225910000	437770000	929470000	481750000	447720000	739490000	382700000	356780000	935760000	427100000	508660000	26826	4837	25414	168262;168263;168264;168265;168266	227712;227713;227714;227715;227716;227717;227718;227719;227720	227717			9	
IYEEAWTK	1	Unmodified	1038.5022	0.50221163	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		34.895	34.51	2	0.032995	29171	160511_QHF_FH_JSI11i_2	49.418	32.032			0.84236	0.90409	30.335	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62982	0.72955	NaN	1	0	Median	1.1266	1.1204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	198640000	106980000	91659000	0	0	0	98315000	58602000	39713000	100330000	48382000	51946000	0	0	0	26827	4518	25415	168267;168268	227721;227722	227722			2	
IYEFPETDDEEENK	1	Unmodified	1756.7316	0.73155546	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	51.345	46.935	2	3.0126E-100	42658	160511_QHF_FH_JSI12i_1	267.57	247.81			1.041	1.0018	12.711	7	0	Median	1.1024	0.92112	NaN	1	0	Median	0.87753	1.0188	21.023	2	0	Median	1.1279	1.0962	12.736	2	0	Median	0.99347	1.0728	11.609	2	0	Median	1592800000	820240000	772600000	335030000	175690000	159340000	471530000	266120000	205410000	410920000	208350000	202580000	375370000	170090000	205270000	26828	2725	25416	168269;168270;168271;168272;168273;168274;168275	227723;227724;227725;227726;227727;227728;227729;227730;227731;227732;227733;227734;227735;227736;227737;227738;227739;227740;227741;227742;227743	227731			21	
IYEGAYHVLHK	1	Unmodified	1328.6877	0.68772099	4301	Q99685	MGLL	Monoglyceride lipase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	28.18	28.158	4	0.00034517	23628	160511_QHF_FH_JSI12i_3	62.408	58.099			0.99709	0.95919	30.498	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2931	1.19	NaN	1	0	Median	0.76885	0.77312	NaN	1	0	Median	193110000	89376000	103730000	0	0	0	0	0	0	71980000	34109000	37871000	121130000	55267000	65863000	26829	4301	25417	168276;168277	227744	227744			1	
IYELAAGGTAVGTGLNTR	0	Unmodified	1762.9214	0.92136233	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.778	10	8	5							7	5	5	6	60.835	60.037	2;3	1.1614E-52	51450	160511_QHF_FH_JSI12i_2	269.7	253.57			1.0167	1.0432	32.456	22	6	Median	1.3959	1.1735	24.969	6	4	Median	0.84055	0.98062	17.995	5	0	Median	1.0557	1.0352	39.998	5	0	Median	0.97824	1.0528	45.136	6	2	Median	5019500000	2531700000	2487800000	937360000	380840000	556520000	1172900000	640470000	532470000	1664100000	845250000	818820000	1245100000	665170000	579950000	26830	887	25418	168278;168279;168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290;168291;168292;168293;168294;168295;168296;168297;168298;168299;168300	227745;227746;227747;227748;227749;227750;227751;227752;227753;227754;227755;227756;227757;227758;227759;227760;227761;227762;227763;227764;227765;227766;227767;227768;227769;227770;227771;227772;227773	227747			27	
IYEPLDVK	1	Unmodified	975.5277	0.5276981	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	45.872	45.107	2	0.0028104	40717	160511_QHF_FH_JSI11i_1	77.282	64.294			0.89874	0.91165	3.8923	6	2	Median	1.1088	0.89674	NaN	1	0	Median	0.74548	0.87584	NaN	1	0	Median	0.93094	0.929	5.7843	2	1	Median	0.87111	0.9378	1.6674	2	1	Median	1789400000	897450000	892000000	266700000	97335000	169370000	395250000	216360000	178890000	518430000	267130000	251300000	609070000	316620000	292450000	26831	1604	25419	168301;168302;168303;168304;168305;168306	227774;227775;227776;227777;227778;227779;227780;227781;227782;227783;227784;227785	227775			12	
IYESHVGISSHEGK	1	Unmodified	1541.7474	0.74742071	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	16.437	16.463	2;3;4	1.0571E-07	13096	160511_QHF_FH_JSI12i_3	98.353	65.939			1.0378	1.0324	2.1125	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0981	1.0189	3.4129	2	0	Median	1.0161	1.0324	0.027166	2	0	Median	553660000	207780000	345890000	0	0	0	0	0	0	203410000	81073000	122330000	350250000	126700000	223550000	26832	2216	25420	168307;168308;168309;168310;168311	227786;227787;227788;227789;227790;227791	227791			5	
IYFLLVR	0	Unmodified	922.56402	0.56402403	525;2829	O75436;Q4G0F5	VPS26A;VPS26B	Vacuolar protein sorting-associated protein 26A;Vacuolar protein sorting-associated protein 26B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	82.617	77.479	2	1.7503E-11	41824	160513_QHF_FH_JSI10Kac_6	154.91	127.6			0.94688	1.087	25.61	9	0	Median	0.90618	0.79614	7.963	3	0	Plateau	0.93897	1.0816	1.438	2	0	Median	1.2534	1.1765	11.186	2	0	Median	1.2353	1.261	20.057	2	0	Median	10581000000	4388800000	6192300000	2748400000	1423100000	1325400000	3659700000	1457900000	2201800000	2773100000	987500000	1785600000	1400000000	520370000	879590000	26833	525;2829	25421	168312;168313;168314;168315;168316;168317;168318;168319;168320	227792;227793;227794;227795;227796;227797;227798;227799;227800;227801;227802	227802			11	
IYFLNQLGDLALSAAQSALLLGIGLQHK	1	Unmodified	2966.6593	0.65932798	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	103.73	95.833	3;4	4.2043E-131	57907	160513_QHF_FH_JSI10Kac_6	301.55	290.63			0.59489	0.68555	37.223	5	1	Median	0.59489	0.51251	NaN	1	0	Median	0.54345	0.64135	9.4246	2	1	Median	1.4348	1.3402	NaN	1	0	Median	0.79742	0.84562	NaN	1	0	Median	2747000000	1793400000	953620000	108950000	65028000	43919000	2062500000	1422800000	639710000	185700000	76445000	109250000	389870000	229140000	160730000	26834	4623	25422	168321;168322;168323;168324;168325	227803;227804;227805;227806;227807;227808	227808			6	
IYFMAGSSR	0	Unmodified	1030.4906	0.49060109	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	4	5	4	47.034	41.31	2	5.1745E-07	22714	160513_QHF_FH_JSI10Kac_6	133.6	105.49			1.0615	0.9093	9.0119	17	0	Linear	1.1587	0.92505	6.6371	4	0	Linear	0.79183	0.93042	8.2707	4	0	Median	1.0936	1.0625	2.482	5	0	Median	0.88998	1.0153	12.035	4	0	Linear	13645000000	6675000000	6970200000	3443800000	1532500000	1911300000	5109900000	2682900000	2427000000	3077200000	1464700000	1612500000	2014300000	994860000	1019400000	26835	1057	25423	168326;168327;168328;168329;168330;168331;168332;168333;168334;168335;168336;168337;168338;168339;168340;168341;168342	227809;227810;227811;227812;227813;227814;227815;227816;227817;227818;227819;227820;227821;227822;227823;227824;227825;227826;227827;227828;227829;227830;227831;227832;227833	227833			25	
IYFMAGSSR	0	Oxidation (M)	1046.4855	0.48551571	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	3.75			1				1	4	4	3	2	3	2	37.702	29.02	2	0.0033294	16273	160513_QHF_FH_JSI10Kac_6	70.525	67.116			1.0593	1.0315	7.0834	10	0	Median	1.2275	1.0375	1.9373	3	0	Median	0.75808	0.90138	3.945	2	0	Median	1.0869	1.0255	2.3026	3	0	Median	1.0157	1.0935	0.098069	2	0	Median	1136000000	517060000	618930000	583780000	229790000	353990000	266930000	151270000	115660000	167400000	77574000	89822000	117890000	58423000	59468000	26836	1057	25423	168343;168344;168345;168346;168347;168348;168349;168350;168351;168352	227834;227835;227836;227837;227838;227839	227839		687	6	
IYFMAGSSRK	1	Unmodified	1158.5856	0.5855641	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	12.8	5.63			1						3	1	2		1	36.714	29.647	3	0.0024642	16003	160513_QHF_FH_JSI9Kac_6	52.167	32.177			0.87166	0.88715	42.596	4	1	Median	1.0036	0.86611	NaN	1	0	Median	0.53903	0.62812	52.226	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0856	1.1759	NaN	1	0	Median	164400000	80252000	84147000	38376000	17421000	20955000	117190000	57807000	59386000	0	0	0	8829900	5024300	3805600	26837	1057	25424	168353;168354;168355;168356	227840;227841;227842;227843;227844	227841			5	
IYFQVFLPK	1	Unmodified	1153.6536	0.65356732	3705	Q8TCF1	ZFAND1	AN1-type zinc finger protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	86.677	78.405	2	0.0012927	43358	160513_QHF_FH_JSI11Kac_6	100.45	82.115			0.93809	1.0383	20.806	4	0	Median	1.3747	1.1673	NaN	1	0	Median	1.024	1.2183	NaN	1	0	Median	0.8319	0.78142	NaN	1	0	Median	0.85935	0.92368	NaN	1	0	Median	537260000	262810000	274460000	144310000	60529000	83785000	159480000	86629000	72850000	142040000	67203000	74834000	91435000	48445000	42990000	26838	3705	25425	168357;168358;168359;168360;168361	227845;227846;227847;227848;227849;227850	227845			5	
IYFTDSSSK	1	Unmodified	1046.492	0.49204087	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.026	28.701	2	0.028911	25481	160511_QHF_FH_JSI10i_1	48.423	37.713			0.70556	0.83366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70556	0.83366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112820000	59733000	53085000	0	0	0	112820000	59733000	53085000	0	0	0	0	0	0	26839	4877	25426	168362	227851	227851			1	
IYFYSWG	0	Unmodified	934.4225	0.42250475	5690	Q9Y5Y5	PEX16	Peroxisomal membrane protein PEX16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15.4	0.49								3	2		1	2	2	85.822	75.807	2	0.034253	42076	160513_QHF_FH_JSI11Kac_6	59.818	59.818			0.87391	0.8619	13.086	5	0	Median	NaN	NaN	NaN	0	0	Median	0.87391	1.0293	NaN	1	0	Median	0.95886	0.94401	12.87	2	0	Median	0.73809	0.80432	6.4018	2	0	Median	43016000	22125000	20890000	0	0	0	2865700	1258900	1606800	27047000	14597000	12450000	13103000	6269500	6833500	26840	5690	25427	168363;168364;168365;168366;168367	227852;227853;227854	227852			3	
IYGADDIELLPEAQHK	1	Unmodified	1810.9101	0.91012895	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								2	5	5	4	66.727	66.068	2;3	8.7459E-28	59922	160511_QHF_FH_JSI10i_1	150.68	126.93			1.1066	1.2219	18.016	12	8	Median	1.1873	0.97862	NaN	1	0	Median	1.0079	1.2144	5.5657	4	3	Median	1.4069	1.3877	25.571	4	3	Median	1.1251	1.2063	14.975	3	2	Median	3328900000	1614600000	1714300000	395050000	194940000	200110000	1061300000	557590000	503730000	914880000	427880000	487000000	957640000	434180000	523460000	26841	1004	25428	168368;168369;168370;168371;168372;168373;168374;168375;168376;168377;168378;168379;168380;168381;168382;168383	227855;227856;227857;227858;227859;227860;227861;227862;227863;227864;227865;227866;227867;227868;227869;227870;227871;227872;227873;227874	227864			20	
IYGESADAVKK	2	Unmodified	1179.6136	0.61355299	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.033	15.096	3	0.0055735	12117	160511_QHF_FH_JSI12i_3	35.204	24.103			1.085	1.0943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.0943	NaN	1	0	Median	4182300000	1981600000	2200700000	0	0	0	0	0	0	0	0	0	4182300000	1981600000	2200700000	26842	1725	25429	168384	227875	227875			1	
IYGFYDECK	1	Unmodified	1193.5063	0.50631073	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	45.138	44.159	2	0.0039183	37550	160511_QHF_FH_JSI12i_2	58.23	53.265			0.94257	0.80064	35.211	3	0	Median	0.94257	0.80064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77771	0.77386	NaN	1	0	Median	1.2953	1.4474	NaN	1	0	Median	403800000	200380000	203430000	60698000	27544000	33154000	0	0	0	203880000	114810000	89072000	139220000	58021000	81199000	26843	1981;1461;1980	25430	168385;168386;168387	227876;227877;227878	227876			3	
IYGISFPDPK	1	Unmodified	1135.5914	0.59136099	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.53	4	10	2				1	4		5	4	6	6	71.046	67.627	2;3	2.0249E-07	62127	160511_QHF_FH_JSI11i_1	117.04	92.113			0.96016	0.99845	15.386	18	2	Median	1.1873	0.99485	2.6689	3	0	Median	0.83495	1.0072	19.564	4	0	Median	0.96031	0.93944	20.486	5	1	Median	0.93344	1.0149	5.1154	6	1	Median	4877400000	2603600000	2273700000	780320000	368170000	412150000	1090400000	642140000	448250000	1702400000	897810000	804570000	1304300000	695500000	608760000	26844	1282	25431	168388;168389;168390;168391;168392;168393;168394;168395;168396;168397;168398;168399;168400;168401;168402;168403;168404;168405;168406;168407;168408	227879;227880;227881;227882;227883;227884;227885;227886;227887;227888;227889;227890;227891;227892;227893;227894;227895;227896;227897;227898;227899;227900;227901;227902;227903;227904;227905;227906;227907;227908;227909;227910;227911;227912;227913	227882			35	
IYGLGSLALYEK	1	Unmodified	1325.7231	0.72310344	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	3	2	3	2	80.045	77.442	2	1.1251E-10	70590	160511_QHF_FH_JSI11i_3	143.89	102.86			0.96417	1.0928	35.04	9	0	Median	1.0891	0.91098	30.972	2	0	Median	0.89978	1.0718	2.7427	2	0	Median	1.3523	1.2789	55.059	3	0	Plateau	1.2062	1.2769	15.628	2	0	Median	3672600000	1690600000	1982000000	228510000	113010000	115500000	546010000	234390000	311620000	1497000000	713020000	783960000	1401100000	630160000	770940000	26845	1454	25432	168409;168410;168411;168412;168413;168414;168415;168416;168417;168418	227914;227915;227916;227917;227918;227919;227920;227921;227922;227923;227924;227925;227926;227927;227928;227929;227930;227931;227932	227915			19	
IYHLQSK	1	Unmodified	887.4865	0.48650199	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	2	1	10.742	10.445	2;3	0.0022018	8026	160511_QHF_FH_JSI11i_3	75.854	30.136			1.0464	1.1142	25.668	6	1	Median	2.1605	1.7658	NaN	1	0	Median	0.95537	1.1491	3.0672	2	1	Median	0.97491	0.91504	19.814	2	0	Median	1.0927	1.1041	NaN	1	0	Median	1686400000	838030000	848320000	134380000	58388000	75989000	382690000	217800000	164900000	496660000	230180000	266480000	672620000	331660000	340960000	26846	2145	25433	168419;168420;168421;168422;168423;168424	227933;227934;227935;227936;227937;227938;227939;227940	227936			8	
IYHPNIDEK	1	Unmodified	1127.5611	0.56112349	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.6		8	8					2	3	6	4	5	6	23.934	21.16	2;3	5.347E-06	17616	160511_QHF_FH_JSI11i_3	116.05	77.088			0.99367	0.98953	23.194	20	1	Median	1.0898	0.89674	40.373	6	1	Median	0.82642	1.0096	21.066	4	0	Median	1.0451	1.0057	7.7995	5	0	Median	0.89594	0.97714	4.8543	5	0	Median	6610500000	3241900000	3368600000	898720000	380660000	518060000	1213000000	620730000	592270000	2603700000	1226800000	1376900000	1895100000	1013800000	881320000	26847	2071	25434	168425;168426;168427;168428;168429;168430;168431;168432;168433;168434;168435;168436;168437;168438;168439;168440;168441;168442;168443;168444;168445	227941;227942;227943;227944;227945;227946;227947;227948;227949;227950;227951;227952;227953;227954;227955;227956;227957;227958;227959;227960;227961;227962;227963;227964;227965;227966;227967;227968;227969;227970;227971;227972;227973;227974;227975;227976;227977;227978;227979;227980;227981;227982;227983	227941			43	
IYHPNINSNGSICLDILR	0	Unmodified	2098.063	0.062957968	1934	P61077;P62837	UBE2D3;UBE2D2	Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.189	76.415	3	3.429E-09	66307	160511_QHF_FH_JSI12i_3	120.9	113.68			0.98791	1.0509	27.558	4	0	Median	1.6385	1.3714	NaN	1	0	Median	0.84155	0.93536	NaN	1	0	Median	0.79501	0.73053	NaN	1	0	Median	1.1597	1.1807	NaN	1	0	Median	228500000	105390000	123110000	15866000	5612700	10254000	39793000	21734000	18059000	71874000	34124000	37750000	100960000	43920000	57044000	26848	1934	25435	168446;168447;168448;168449	227984;227985;227986	227986			2	
IYHPNVDK	1	Unmodified	984.50288	0.50288033	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	5.96		7	7						5	5	4	4	6	15.632	13.243	2;3	0.00028748	10262	160511_QHF_FH_JSI12i_3	92.439	82.025			1.1192	1.1034	14.861	19	2	Median	1.2911	1.104	6.0103	5	0	Median	0.94574	1.125	22.347	4	0	Median	0.9545	0.92305	3.8003	4	0	Median	1.0714	1.1621	13.594	6	2	Median	6396000000	2965500000	3430400000	572980000	263660000	309320000	842920000	453250000	389670000	1891500000	909030000	982510000	3088500000	1339600000	1748900000	26849	1937	25436	168450;168451;168452;168453;168454;168455;168456;168457;168458;168459;168460;168461;168462;168463;168464;168465;168466;168467;168468	227987;227988;227989;227990;227991;227992;227993;227994;227995;227996;227997;227998;227999;228000;228001;228002;228003;228004;228005;228006;228007;228008;228009;228010;228011;228012	228009			26	
IYHQFIIIMEK	1	Oxidation (M)	1449.769	0.76900778	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			64.084	55.503	3	0.0076414	29497	160513_QHF_FH_JSI9Kac_6	40.516	33.477			0.98966	1.0056	9.9983	2	0	Median	1.2629	1.0793	NaN	1	0	Median	0.77555	0.937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43612000	23172000	20439000	21852000	10827000	11024000	21760000	12345000	9415000	0	0	0	0	0	0	26850	4932	25437	168469;168470	228013;228014;228015	228014		2557	3	
IYHQFIIIMEK	1	Unmodified	1433.7741	0.77409316	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	74.492	65.808	3	2.3362E-08	36261	160513_QHF_FH_JSI10Kac_6	116.54	88.256			0.85034	0.8291	18.097	4	0	Median	0.97251	0.85052	NaN	1	0	Median	0.93616	1.1006	NaN	1	0	Median	0.75161	0.71629	NaN	1	0	Median	0.77238	0.80822	NaN	1	0	Median	215380000	97128000	118250000	36075000	22832000	13243000	79439000	32362000	47077000	50636000	18453000	32183000	49226000	23482000	25744000	26851	4932	25437	168471;168472;168473;168474	228016;228017;228018;228019;228020	228020			5	
IYHTIAYLTPLPQPNR	0	Unmodified	1896.0258	0.025767826	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	71.529	65.226	3	3.1179E-11	35109	160513_QHF_FH_JSI11Kac_6	121.76	115.73			1.0872	1.0871	13.519	6	0	Median	1.4378	1.1891	8.7322	2	0	Median	0.93051	1.0802	16.384	2	0	Median	1.1218	1.0571	NaN	1	0	Median	0.8248	0.88864	NaN	1	0	Median	598040000	312050000	286000000	168890000	74101000	94790000	235410000	139000000	96405000	136360000	66896000	69466000	57382000	32045000	25336000	26852	976	25438	168475;168476;168477;168478;168479;168480	228021;228022;228023;228024;228025;228026;228027;228028;228029;228030	228023			10	
IYIDSNNNPER	0	Unmodified	1333.6262	0.62624295	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	29.912	26.626	2	1.942E-14	23712	160511_QHF_FH_JSI10i_1	155.07	119.77			1.0767	1.1265	11.89	10	0	Median	1.4947	1.2395	20.394	2	0	Median	1.0248	1.2269	7.2762	3	0	Median	1.1399	1.1178	5.321	3	0	Plateau	0.91695	0.9862	5.1954	2	0	Median	5842900000	2793600000	3049300000	1395700000	583420000	812300000	1684800000	900700000	784130000	1555700000	724560000	831190000	1206600000	584910000	621680000	26853	2155	25439	168481;168482;168483;168484;168485;168486;168487;168488;168489;168490;168491	228031;228032;228033;228034;228035;228036;228037;228038;228039;228040;228041;228042;228043;228044;228045;228046;228047;228048	228038			18	
IYIHSYNTATIFHELVYK	1	Unmodified	2211.1364	0.13644049	5297	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.96	75.364	4	0.0063392	41470	160513_QHF_FH_JSI10Kac_6	40.349	31.959			0.5982	0.70685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5982	0.70685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129580000	78464000	51112000	0	0	0	129580000	78464000	51112000	0	0	0	0	0	0	26854	5297	25440	168492	228049	228049			1	
IYISLLK	1	Unmodified	848.53714	0.53714057	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	69.389	68.624	2	0.035999	60729	160511_QHF_FH_JSI11i_3	49.358	24.36			1.0265	1.0971	15.264	7	0	Median	1.2209	1.0333	19.318	2	0	Median	0.89808	1.0971	NaN	1	0	Median	1.0647	1.0341	17.577	2	0	Median	1.0352	1.0717	26.057	2	0	Median	501670000	229910000	271760000	92914000	42119000	50796000	38182000	23580000	14602000	170440000	81152000	89285000	200140000	83058000	117080000	26855	442	25441	168493;168494;168495;168496;168497;168498;168499	228050;228051;228052;228053;228054	228050			5	
IYISNTFSPSK	1	Unmodified	1255.6449	0.64485312	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	53.262	52.224	2	0.0073217	44800	160511_QHF_FH_JSI12i_2	52.167	30.081			0.72943	0.63684	NaN	1	1	Median	0.72943	0.63684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35895000	20484000	15411000	35895000	20484000	15411000	0	0	0	0	0	0	0	0	0	26856	3908	25442	168500;168501	228055;228056	228055			2	
IYITLTGVHQVPTENVQVHFTER	0	Unmodified	2680.3973	0.39729963	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.25	6.56		2	5						5	6	6			79.257	75.696	2;3;4	0	39480	160513_QHF_FH_JSI10Kac_6	417.4	386.01			1.0663	0.9725	23.396	12	7	Median	1.1838	0.9725	29.689	6	4	Median	1.0663	1.3066	17.886	6	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4567800000	2214500000	2353300000	969130000	434060000	535070000	3598700000	1780500000	1818200000	0	0	0	0	0	0	26857	4837	25443	168502;168503;168504;168505;168506;168507;168508;168509;168510;168511;168512;168513	228057;228058;228059;228060;228061;228062;228063;228064;228065;228066;228067;228068;228069;228070	228070			14	
IYIVMNYVEHDLK	1	Unmodified	1635.8331	0.8330646	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.9		1							6	3	2	1	1	80.284	72.4	3	1.213E-07	38762	160513_QHF_FH_JSI9Kac_6	135.58	107.29			1.0075	0.88428	217.08	6	6	Median	1.0075	0.88428	153.79	2	2	Median	0.57766	0.67873	369.4	2	2	Median	0.18323	0.17778	NaN	1	1	Median	7.4681	7.9768	NaN	1	1	Median	684560000	385170000	299400000	156280000	82613000	73668000	415760000	240810000	174950000	68616000	56294000	12322000	43902000	5444200	38458000	26858	1187	25444	168514;168515;168516;168517;168518;168519;168520	228071;228072;228073;228074;228075;228076;228077	228073			7	
IYKHAGNIK	2	Acetyl (K)	1084.6029	0.60292873	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	21.814	13.591	3	0.0045802	8488	160513_QHF_FH_JSI11Kac_6	49.06	27.314			0.18548	0.19323	63.602	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3124	0.30296	NaN	1	0	Median	0.11012	0.12324	NaN	1	1	Median	17508000	13137000	4371000	0	0	0	0	0	0	14463000	10299000	4163700	3044800	2837500	207270	26859	4518	25445	168521;168522	228078;228079	228078	3175		2	
IYKIGQGYLIK	2	Acetyl (K)	1336.7755	0.77547336	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.057	66.733	2	0.0069304	36350	160513_QHF_FH_JSI11Kac_6	66.435	53.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16695000	16695000	0	0	0	0	0	0	0	16695000	16695000	0	0	0	0	26860	1484	25446	168523	228080	228080	1492;1493		1	
IYLDMLNVYK	1	Unmodified	1270.6631	0.66314572	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.71		4						2	4	2	2	3	3	85.052	79.006	2	0.00012091	41307	160513_QHF_FH_JSI11Kac_6	99.136	76.556			1.2707	1.2538	23.983	10	2	Median	1.4562	1.2441	25.769	2	0	Median	1.1181	1.3056	35.955	2	0	Median	1.5797	1.5355	37.892	3	0	Plateau	1.0976	1.2347	11.393	3	2	Median	1340000000	536670000	803290000	305770000	112300000	193470000	232730000	107450000	125270000	412800000	158600000	254210000	388660000	158320000	230340000	26861	231	25447	168524;168525;168526;168527;168528;168529;168530;168531;168532;168533	228081;228082;228083;228084;228085;228086;228087;228088;228089	228082			7	
IYLDMLNVYK	1	Oxidation (M)	1286.6581	0.65806035	231	O14980	XPO1	Exportin-1	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			77.576	67.146	2	0.040588	33491	160513_QHF_FH_JSI10Kac_5	37.191	22.525			0.6554	0.76515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6554	0.76515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2976100	1396800	1579300	0	0	0	2976100	1396800	1579300	0	0	0	0	0	0	26862	231	25447	168534	228090	228090			1	
IYLPYLHEWK	1	Unmodified	1360.718	0.71795849	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								1	3	2	77.203	76.789	3	0.00022046	66654	160511_QHF_FH_JSI12i_3	68.893	61.523			1.0173	1.0104	43.361	4	3	Median	NaN	NaN	NaN	0	0	Median	1.8478	2.2409	NaN	1	1	Median	0.9749	0.89968	3.8219	2	2	Median	1.0297	1.1045	NaN	1	0	Median	108150000	48655000	59497000	0	0	0	4868200	2331100	2537100	55643000	27910000	27733000	47641000	18414000	29227000	26863	4319	25448	168535;168536;168537;168538;168539;168540	228091;228092;228093;228094;228095;228096;228097;228098;228099	228098			9	
IYLPYLQNWSHPK	1	Unmodified	1657.8617	0.86166261	3437	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	81.901	81.195	3	2.0799E-06	70305	160511_QHF_FH_JSI12i_3	86.772	75.918			0.86028	0.90032	20.437	4	2	Median	1.5601	1.2728	NaN	1	1	Median	0.74134	0.85891	NaN	1	0	Median	0.87581	0.79995	NaN	1	0	Median	0.84502	0.94373	NaN	1	1	Median	184290000	84803000	99484000	39695000	14293000	25401000	24400000	12966000	11434000	48842000	22784000	26058000	71352000	34760000	36592000	26864	3437	25449	168541;168542;168543;168544;168545;168546	228100;228101;228102;228103;228104;228105;228106	228106			7	
IYLSCLEELMK	1	Unmodified	1397.6935	0.69345957	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	99.494	99.34	2	0.0016863	86981	160511_QHF_FH_JSI11i_2	61.78	51.471			0.95051	1.0834	32.926	4	2	Median	NaN	NaN	NaN	0	0	Median	0.93206	1.1497	39.405	2	2	Median	0.77111	0.772	NaN	1	0	Median	1.1716	1.349	NaN	1	0	Median	187960000	96238000	91721000	0	0	0	60023000	28353000	31670000	73483000	36244000	37239000	54454000	31641000	22813000	26865	2692	25450	168547;168548;168549;168550	228107;228108;228109;228110;228111	228108			5	
IYLTADNLVLNLQDESFTR	0	Unmodified	2224.1376	0.1375627	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.97	3	8							1	3	3	4	2	100.6	99.77	2;3	1.9294E-138	92006	160511_QHF_FH_JSI10i_1	352.15	286.65			1.0212	1.0654	21.08	12	1	Median	1.2515	1.0533	29.653	3	1	Plateau	0.82695	1.015	6.8511	3	0	Plateau	1.0362	1.0577	26.487	4	0	Median	0.98929	1.0934	7.6968	2	0	Median	3645700000	1855200000	1790500000	621810000	278230000	343580000	1066000000	571900000	494080000	957710000	512730000	444980000	1000200000	492340000	507840000	26866	4296	25451	168551;168552;168553;168554;168555;168556;168557;168558;168559;168560;168561;168562	228112;228113;228114;228115;228116;228117;228118	228114			7	
IYLTLLR	0	Unmodified	890.55894	0.55893865	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			76.779	69.346	2	0.0055326	38263	160513_QHF_FH_JSI10Kac_6	94.401	59.296			1.0053	1.0015	9.0114	2	1	Median	1.1229	0.93971	NaN	1	1	Median	0.9	1.0674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	360730000	186870000	173860000	196400000	88980000	107420000	164330000	97892000	66441000	0	0	0	0	0	0	26867	4416	25452	168563;168564	228119;228120	228120			2	
IYLYLTK	1	Unmodified	912.53206	0.5320552	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5.38	6.16	2	3	1						2	1	1	3	3	61.823	58.915	2	0.025501	50533	160511_QHF_FH_JSI12i_2	54.549	8.8314			1.1049	1.1445	12.828	8	0	Median	1.3276	1.1693	NaN	1	0	Median	0.80688	0.91852	NaN	1	0	Median	1.2225	1.2054	15.614	3	0	Plateau	1.0452	1.1256	9.9406	3	0	Plateau	1420000000	637140000	782820000	127730000	55296000	72432000	21229000	13203000	8026600	813150000	349030000	464110000	457860000	219610000	238250000	26868	1519	25453	168565;168566;168567;168568;168569;168570;168571;168572	228121;228122;228123;228124	228121			4	
IYNCHVLLNSK	1	Unmodified	1359.6969	0.69690547	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	32.659	32.262	2;3	0.00041908	28031	160511_QHF_FH_JSI11i_3	61.11	48.965			1.3522	1.4318	45.384	4	2	Median	NaN	NaN	NaN	0	0	Median	1.4623	1.6799	NaN	1	1	Median	1.0322	0.94266	NaN	1	0	Median	1.8413	1.8164	56.241	2	1	Median	296790000	123710000	173080000	0	0	0	50171000	20564000	29606000	92262000	44661000	47601000	154360000	58482000	95875000	26869	3372	25454	168573;168574;168575;168576;168577	228125;228126;228127;228128;228129;228130;228131;228132	228126			8	
IYNEIPDINLDVPHSYSVLER	0	Unmodified	2485.2489	0.24890406	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	92.078	91.73	3	8.1925E-10	79440	160511_QHF_FH_JSI12i_3	106.47	98.476			1.2488	1.2674	7.6792	6	0	Median	1.3256	1.1289	NaN	1	0	Median	1.0445	1.2824	NaN	1	0	Median	1.2856	1.2615	9.3331	2	0	Median	1.2305	1.315	6.8847	2	0	Median	2211000000	1088300000	1122600000	371380000	165760000	205610000	475110000	247060000	228050000	669920000	347020000	322900000	694550000	328480000	366070000	26870	2846	25455	168578;168579;168580;168581;168582;168583	228133;228134;228135;228136;228137;228138	228138			5	
IYNLPPELYHEGEQVEYAEMVPVLR	0	Unmodified	2987.4739	0.47389498	4450	Q9BUR4	WRAP53	Telomerase Cajal body protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.91	100.79	3	9.8903E-10	88474	160511_QHF_FH_JSI11i_2	96.303	77.584			0.81277	0.84988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81277	0.84988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37419000	12533000	24886000	0	0	0	0	0	0	37419000	12533000	24886000	0	0	0	26871	4450	25456	168584	228139	228139			1	
IYNSIYIGSQDALIAHYPR	0	Unmodified	2193.1219	0.12185306	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	2	2	2	75.504	74.082	3	3.5002E-34	38750	160513_QHF_FH_JSI10Kac_6	163.45	154.45			0.96604	1.0732	12.831	7	0	Median	1.2522	1.0732	NaN	1	0	Median	0.86609	1.0476	14.358	2	0	Median	1.1581	1.1239	24.101	2	0	Median	0.96399	1.0261	10.446	2	0	Median	992970000	458190000	534780000	88873000	41424000	47449000	432440000	226490000	205950000	246500000	103910000	142590000	225160000	86365000	138790000	26872	542	25457	168585;168586;168587;168588;168589;168590;168591	228140;228141;228142;228143;228144;228145;228146	228146			6	
IYPANAKGMVEK	2	Acetyl (K);Oxidation (M)	1377.6962	0.69623677	3718	Q8TD57	DNAH3	Dynein heavy chain 3, axonemal	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	2	1	1	1	95.878	87.342	2	0.017195	47443	160513_QHF_FH_JSI12Kac_6	45.368	31.161			1.0402	1.0122	16.941	5	0	Median	1.0704	0.89638	29.257	2	0	Median	0.86318	1.0122	NaN	1	0	Median	1.0485	0.98612	NaN	1	0	Median	1.0402	1.0953	NaN	1	0	Median	1184900000	602570000	582330000	330260000	151310000	178950000	240090000	129590000	110500000	148640000	81698000	66946000	465910000	239970000	225940000	26873	3718	25458	168592;168593;168594;168595;168596	228147;228148;228149;228150	228149	2917	2283	4	
IYPELLK	1	Unmodified	874.51641	0.51640513	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				55.203	54.182	2	0.0572	47642	160511_QHF_FH_JSI9i_2	41.502	21.94			1.1603	1.0409	NaN	1	0	Median	1.1603	1.0409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48055000	19444000	28611000	48055000	19444000	28611000	0	0	0	0	0	0	0	0	0	26874	3382	25459	168597	228151	228151			1	
IYPFWTPDIPLSSYVK	1	Unmodified	1924.9975	0.99748739	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	101.93	101.78	2	6.0776E-08	87701	160511_QHF_FH_JSI12i_2	136.38	109.63			1.0926	1.149	25.238	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3739	1.3735	NaN	1	1	Median	0.86884	0.96124	NaN	1	1	Median	185390000	105160000	80227000	0	0	0	0	0	0	83232000	45474000	37758000	102150000	59685000	42470000	26875	2918	25460	168598;168599	228152;228153	228152			2	
IYPGHGR	0	Unmodified	798.41367	0.41367139	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	3	1	2	7.0456	3.9225	2	0.0054313	4130	160511_QHF_FH_JSI10i_3	112.27	112.27			1.3879	1.112	21.158	7	1	Median	1.4811	1.2235	16.159	2	0	Median	0.82724	0.95972	2.8692	2	1	Median	1.395	1.3317	NaN	1	0	Median	1.3114	1.3781	30.338	2	0	Median	3053900000	1300700000	1753200000	1207600000	497490000	710120000	743830000	366580000	377250000	650270000	271110000	379160000	452180000	165500000	286670000	26876	2120	25461	168600;168601;168602;168603;168604;168605;168606;168607	228154;228155;228156;228157;228158;228159	228155			6	
IYPHGLVLLDLQSYDGDAQGK	1	Unmodified	2301.1641	0.1641118	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	1	3	3	2	88.579	87.011	2;3	8.3958E-29	76917	160511_QHF_FH_JSI12i_3	175.21	170.69			1.0735	1.1761	18.831	7	3	Median	1.7027	1.463	NaN	1	1	Median	1.1749	1.3754	18.358	2	1	Median	1.0658	1.012	1.4109	2	1	Median	1.0224	1.068	13.639	2	0	Median	755090000	334650000	420440000	73364000	16086000	57278000	29081000	9584600	19497000	195760000	96117000	99644000	456880000	212860000	244020000	26877	1784	25462	168608;168609;168610;168611;168612;168613;168614;168615;168616	228160;228161;228162;228163;228164;228165;228166;228167;228168;228169;228170;228171;228172;228173;228174;228175;228176;228177	228172			18	
IYPLPDDPSVPAPPR	0	Unmodified	1632.8512	0.8511575	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	69.81	69.219	2;3	6.914E-05	61357	160511_QHF_FH_JSI9i_1	115.18	77.831			0.67489	0.58778	16.817	7	1	Median	0.7348	0.60797	4.7746	2	0	Median	0.45215	0.52503	NaN	1	1	Median	0.58311	0.56391	23.49	2	0	Median	0.58472	0.60523	30.455	2	0	Median	899020000	590260000	308760000	205520000	132540000	72984000	208800000	154330000	54476000	243700000	154210000	89491000	241000000	149190000	91812000	26878	5161	25463	168617;168618;168619;168620;168621;168622;168623	228178;228179;228180;228181;228182;228183;228184;228185;228186;228187;228188;228189	228188			12	
IYPLPHMYVIK	1	Unmodified	1372.7577	0.75771481	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	2	3	4	5	70.96	67.854	2;3	1.0025E-07	35991	160513_QHF_FH_JSI11Kac_6	107.79	94.91			0.96217	1.0333	13.796	13	0	Median	1.1801	1.0087	1.8909	2	0	Median	0.89826	1.0566	5.136	3	0	Median	1.0983	1.0589	14.889	4	0	Median	0.97616	1.0493	22.381	4	0	Median	2775200000	1273100000	1502000000	271040000	117180000	153860000	608760000	320830000	287920000	1001600000	437860000	563770000	893740000	397270000	496460000	26879	1196	25464	168624;168625;168626;168627;168628;168629;168630;168631;168632;168633;168634;168635;168636;168637	228190;228191;228192;228193;228194;228195;228196;228197;228198;228199;228200;228201;228202;228203;228204;228205;228206;228207;228208;228209;228210;228211;228212;228213;228214;228215;228216	228203			27	
IYPLPHMYVIK	1	Oxidation (M)	1388.7526	0.75262943	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	61.884	54.513	3	0.00012118	29647	160513_QHF_FH_JSI11Kac_6	85.355	73.772			1.1853	1.0954	11.607	5	2	Median	1.392	1.1876	NaN	1	0	Median	0.87254	1.058	NaN	1	0	Median	1.0884	1.0274	9.0633	2	1	Median	1.2506	1.3083	NaN	1	1	Median	122630000	57224000	65408000	26929000	13980000	12949000	20968000	10535000	10434000	54186000	24811000	29375000	20549000	7898400	12650000	26880	1196	25464	168638;168639;168640;168641;168642	228217;228218;228219;228220;228221;228222;228223	228218		823	7	
IYPTFLHLHGK	1	Unmodified	1324.7292	0.72919187	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	5.91			17						7	7	8	4	5	57.692	54.105	2;3;4	2.8965E-06	45594	160511_QHF_FH_JSI10i_3	104.52	99.369			1.07	0.94206	18.702	22	6	Median	1.1002	0.9034	10.614	7	0	Median	0.78631	0.9141	24.519	6	3	Median	1.1215	1.0542	9.1173	4	1	Median	1.1107	1.1753	19.82	5	2	Median	4975900000	2374800000	2601100000	1095300000	461480000	633840000	1004600000	526330000	478280000	1184100000	590510000	593580000	1691800000	796490000	895350000	26881	2277	25465	168643;168644;168645;168646;168647;168648;168649;168650;168651;168652;168653;168654;168655;168656;168657;168658;168659;168660;168661;168662;168663;168664;168665;168666	228224;228225;228226;228227;228228;228229;228230;228231;228232;228233;228234;228235;228236;228237;228238;228239;228240;228241;228242;228243;228244;228245;228246;228247;228248;228249;228250;228251;228252;228253;228254;228255;228256;228257;228258;228259;228260;228261;228262;228263;228264;228265;228266;228267;228268;228269;228270;228271;228272;228273;228274;228275	228233			52	
IYPTFLHLHGKTFDYK	2	Acetyl (K)	2021.0411	0.041083539	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.108	69.793	4	0.00089909	38180	160513_QHF_FH_JSI11Kac_6	69.148	60.96			0.25984	0.25028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25984	0.25028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105360000	95229000	10133000	0	0	0	0	0	0	105360000	95229000	10133000	0	0	0	26882	2277	25466	168667	228276	228276	2369;2370		1	
IYPTIWWLFR	0	Unmodified	1393.7547	0.75467834	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.38			1	1					6	2	1	4	1	98.183	90.518	2	2.9017E-09	50363	160513_QHF_FH_JSI11Kac_6	130.27	78.926			1.0193	1.0378	24.004	8	7	Median	1.3053	1.4073	8.7686	2	2	Median	0.89408	0.85047	NaN	1	1	Median	0.95497	1.1683	21.974	4	3	Linear	0.98922	0.98458	NaN	1	1	Median	141420000000	65002000000	76422000000	41392000000	16885000000	24507000000	23874000000	12748000000	11126000000	54795000000	25303000000	29492000000	21362000000	10066000000	11296000000	26883	1000	25467	168668;168669;168670;168671;168672;168673;168674;168675	228277;228278;228279;228280;228281;228282;228283;228284	228279			8	
IYPTVNCQPLGMISLMKR	1	Oxidation (M)	2136.0894	0.089372414	782	P01042	KNG1	Kininogen-1;Kininogen-1 heavy chain;T-kinin;Bradykinin;Lysyl-bradykinin;Kininogen-1 light chain;Low molecular weight growth-promoting factor	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		88.964	88.964	3	0.018541	79399	160511_QHF_FH_JSI11i_3	34.277	17.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26884	782	25468	168676	228285	228285		298;299	1	
IYQEEEMPESGAGSEFNR	0	Unmodified	2071.8793	0.8792991	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.969	46.311	2	2.6233E-05	42096	160511_QHF_FH_JSI12i_1	84.506	64.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26885	1432	25469	168677	228286	228286			1	
IYQEEEMPESGAGSEFNRK	1	Unmodified	2199.9743	0.97426212	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	40.355	39.732	3	5.3323E-09	33897	160511_QHF_FH_JSI12i_2	87.49	80.297			0.96359	1.064	11.336	7	0	Median	1.3148	1.1158	NaN	1	0	Median	0.87844	1.0754	NaN	1	0	Median	1.2557	1.2176	16.517	3	0	Plateau	0.94338	0.98941	10.279	2	0	Median	1077900000	547320000	530560000	91800000	39661000	52139000	270520000	141770000	128750000	504820000	261010000	243810000	210740000	104870000	105870000	26886	1432	25470	168678;168679;168680;168681;168682;168683;168684	228287;228288;228289;228290;228291;228292;228293;228294;228295;228296;228297;228298;228299;228300	228291			14	
IYQGEDLPHPK	1	Unmodified	1295.651	0.65100113	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	28.912	28.021	2;3	0.0021856	24164	160511_QHF_FH_JSI9i_2	48.741	31.715			1.0163	1.1393	13.816	7	1	Median	1.3075	1.1393	NaN	1	0	Median	0.94627	1.1467	8.6573	2	1	Median	1.0028	1.0119	17.269	2	0	Median	0.88921	0.98388	21.035	2	0	Median	739590000	365260000	374340000	124000000	56976000	67024000	169030000	87250000	81777000	220040000	109240000	110800000	226520000	111790000	114730000	26887	3036	25471	168685;168686;168687;168688;168689;168690;168691	228301;228302;228303;228304;228305;228306;228307	228302			7	
IYQGSSGSYFVK	1	Unmodified	1334.6507	0.65066678	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	40.721	39.806	2	0.0030581	34056	160511_QHF_FH_JSI12i_2	67.704	47.917			0.98915	1.0273	1.3448	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0484	1.0372	NaN	1	1	Median	0.93321	1.0176	NaN	1	1	Median	80797000	46240000	34557000	0	0	0	0	0	0	42443000	23265000	19178000	38354000	22975000	15379000	26888	4422	25472	168692;168693;168694	228308;228309;228310	228308			3	
IYQHVINK	1	Unmodified	1013.5658	0.56581494	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	14.401	14.474	2;3	0.0052958	11181	160511_QHF_FH_JSI12i_3	74.415	15.498			0.72205	0.74148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72205	0.74148	NaN	1	0	Median	305450000	166290000	139160000	0	0	0	0	0	0	0	0	0	305450000	166290000	139160000	26889	4951	25473	168695;168696	228311;228312	228312			2	
IYQIYEGTSQIQR	0	Unmodified	1597.81	0.81002097	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.41	6	8	3				5	7	1	6	7	9	8	53.146	47.964	2;3	4.3111E-31	41245	160511_QHF_FH_JSI12i_2	194.54	138.99			1.1137	1.0938	17.08	29	4	Median	1.2902	1.1107	24.547	6	1	Median	1.0329	1.2516	17.94	7	1	Median	1.1236	1.098	16.492	8	0	Median	0.97976	1.0736	8.9467	8	2	Median	2859400000	1370800000	1488600000	618820000	286060000	332750000	496980000	250350000	246620000	1000100000	473450000	526640000	743490000	360930000	382560000	26890	997	25474	168697;168698;168699;168700;168701;168702;168703;168704;168705;168706;168707;168708;168709;168710;168711;168712;168713;168714;168715;168716;168717;168718;168719;168720;168721;168722;168723;168724;168725;168726	228313;228314;228315;228316;228317;228318;228319;228320;228321;228322;228323;228324;228325;228326;228327;228328;228329;228330;228331;228332;228333;228334;228335;228336;228337;228338;228339;228340;228341;228342;228343;228344;228345;228346;228347;228348;228349;228350;228351;228352;228353;228354;228355	228319			43	
IYQNIQDGSLDLNAAESGVQHK	1	Unmodified	2399.1717	0.17171637	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	58.908	58.121	3	7.205E-47	51663	160511_QHF_FH_JSI9i_1	206.37	190.88			0.91976	0.9313	11.487	8	0	Median	1.1507	0.96594	5.262	2	0	Median	0.72971	0.88626	2.1608	2	0	Median	1.0634	1.0434	15.975	2	0	Median	0.81486	0.86746	14.335	2	0	Median	859830000	461510000	398310000	189700000	84012000	105680000	263120000	150690000	112430000	218320000	107310000	111010000	188690000	119500000	69190000	26891	1938	25475	168727;168728;168729;168730;168731;168732;168733;168734	228356;228357;228358;228359;228360;228361;228362;228363;228364;228365;228366;228367;228368	228363			13	
IYQNIQDGSLDLNAAESGVQHKPSAPQGGR	1	Unmodified	3149.549	0.54900226	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	3	2	1	55.131	54.2	3;4	1.1719E-90	48171	160511_QHF_FH_JSI11i_3	228.41	222.51			1.1932	1.1303	15.602	9	2	Median	1.2498	1.0537	18.958	3	1	Plateau	0.85915	0.98289	15.89	3	0	Plateau	1.124	1.0913	18.462	2	0	Median	1.1227	1.1303	NaN	1	1	Median	1516500000	757360000	759140000	348800000	155570000	193230000	800760000	409460000	391310000	331030000	167710000	163320000	35909000	24629000	11280000	26892	1938	25476	168735;168736;168737;168738;168739;168740;168741;168742;168743	228369;228370;228371;228372;228373;228374;228375;228376;228377;228378;228379;228380;228381;228382;228383;228384;228385;228386;228387;228388	228371			20	
IYQPEGEEGWLYGVVSHQDSITR	0	Unmodified	2662.2663	0.26634504	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.521	85.368	3	5.1696E-06	74050	160511_QHF_FH_JSI12i_3	60.278	56.077			1.552	1.5464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.552	1.5464	NaN	1	0	Median	76197000	28996000	47202000	0	0	0	0	0	0	0	0	0	76197000	28996000	47202000	26893	3239	25477	168744	228389	228389			1	
IYQTFVALAAQLQSIHENVK	1	Unmodified	2272.2216	0.2215671	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	94.327	89.965	3	3.3196E-71	44738	160513_QHF_FH_JSI9Kac_6	203.77	188.35			0.90906	0.87853	34.197	9	2	Median	1.2273	1.0147	31.637	2	0	Median	0.75709	0.87853	56.461	3	2	Median	0.74781	0.71596	0.64359	2	0	Median	0.94211	0.9782	7.4596	2	0	Median	3028400000	1606500000	1421900000	722300000	315450000	406860000	1196300000	638330000	557940000	780780000	456870000	323900000	329030000	195800000	133230000	26894	4477	25478	168745;168746;168747;168748;168749;168750;168751;168752;168753	228390;228391;228392;228393;228394;228395;228396;228397;228398;228399;228400;228401;228402;228403;228404	228397			15	
IYQWINELSSPETR	0	Unmodified	1734.8577	0.85769944	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	75.245	74.465	2	9.4728E-07	65367	160511_QHF_FH_JSI11i_2	160.15	124.5			0.89495	1.0091	34.117	6	4	Median	1.373	1.1807	NaN	1	1	Median	0.85642	1.0314	NaN	1	0	Median	0.95018	0.91692	15.416	2	1	Median	0.63424	0.67498	55.006	2	2	Median	195780000	98261000	97521000	28657000	6811900	21845000	52545000	26565000	25980000	65111000	36192000	28919000	49469000	28692000	20778000	26895	3854	25479	168754;168755;168756;168757;168758;168759	228405;228406;228407;228408;228409;228410;228411;228412	228410			8	
IYQYVINK	1	Unmodified	1039.5702	0.57023162	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	5.98		4					3	4	2	2	4	4	3	43.686	37.126	2	0.0022334	31696	160511_QHF_FH_JSI12i_2	81.635	66.002			0.90539	0.93677	17.066	10	0	Median	1.1234	0.95755	26.13	2	0	Median	0.79762	0.94708	8.4971	2	0	Median	0.86933	0.86911	13.265	3	0	Median	1.0592	1.1434	22.521	3	0	Median	712170000	373500000	338670000	121200000	54302000	66895000	162080000	84769000	77306000	270640000	151960000	118680000	158260000	82470000	75795000	26896	1126	25480	168760;168761;168762;168763;168764;168765;168766;168767;168768;168769;168770;168771;168772	228413;228414;228415;228416;228417;228418;228419;228420;228421;228422;228423;228424;228425;228426;228427;228428	228413			16	
IYQYVINKER	1	Acetyl (K)	1366.7245	0.72450043	1126	P17812	CTPS1	CTP synthase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	57.263	46.573	2	0.047702	25550	160513_QHF_FH_JSI11Kac_5	43.512	38.865			0.93493	1.0552	56.693	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1359	1.3271	2.2882	2	0	Median	0.40718	0.3991	NaN	1	0	Median	0.78695	0.85278	NaN	1	0	Median	17233000	10830000	6403500	0	0	0	4553800	2273300	2280500	9795500	7135200	2660300	2884100	1421400	1462700	26897	1126	25481	168773;168774;168775;168776	228429	228429			1	
IYRAEDIPQMDDAFSQTVK	1	Unmodified	2226.0627	0.062683196	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	68.259	67.744	3	4.3204E-06	58473	160511_QHF_FH_JSI12i_3	91.637	83.137			0.85015	0.85158	31.728	5	0	Median	0.7328	0.61162	NaN	1	0	Median	0.46514	0.56807	NaN	1	0	Median	1.1246	1.0864	15.161	2	0	Median	0.85015	0.85158	NaN	1	0	Median	541040000	281690000	259350000	68124000	40786000	27338000	93682000	59603000	34079000	184470000	78141000	106330000	194770000	103160000	91601000	26898	5161	25482	168777;168778;168779;168780;168781	228430;228431;228432	228432			3	
IYRAEDIPQMDDAFSQTVK	1	Oxidation (M)	2242.0576	0.057597819	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	53.256	53.021	3	0.0015327	45428	160511_QHF_FH_JSI12i_3	58.073	48.285			0.52834	0.55491	25.41	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52834	0.55491	25.41	2	2	Median	89042000	54269000	34773000	0	0	0	0	0	0	0	0	0	89042000	54269000	34773000	26899	5161	25482	168782;168783	228433;228434	228434		2594	2	
IYREIDVDR	0	Unmodified	1177.6091	0.60913632	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.295	24.02	3	0.023859	19822	160511_QHF_FH_JSI10i_3	26.889	11.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26900	1122	25483	168784	228435	228435			1	
IYSFNSTNDSSGPANLDK	1	Unmodified	1928.8752	0.8752	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	50.314	49.53	2	1.0271E-22	44837	160511_QHF_FH_JSI11i_1	175.15	161.25			1.2937	1.2356	14.581	5	2	Median	1.6149	1.3487	12.387	2	2	Median	1.0649	1.2318	NaN	1	0	Median	1.2937	1.2414	NaN	1	0	Median	0.91246	0.97728	NaN	1	0	Median	201190000	94512000	106670000	70320000	26989000	43332000	38969000	21662000	17307000	47728000	19779000	27948000	44170000	26082000	18088000	26901	3267	25484	168785;168786;168787;168788;168789	228436;228437;228438;228439;228440;228441;228442;228443	228437			8	
IYSHSLLPVLR	0	Unmodified	1296.7554	0.75540662	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.33		1	6						4	3	4	2	2	64.541	60.644	2;3	8.8224E-08	33078	160513_QHF_FH_JSI10Kac_6	109.16	99.822			0.88564	0.79756	11.547	11	0	Plateau	1.0415	0.82611	6.7932	3	0	Plateau	0.77341	0.81339	6.813	4	0	Linear	0.95927	0.91811	12.02	2	0	Median	0.81292	0.84813	29.49	2	0	Median	1796900000	954150000	842730000	548960000	263540000	285420000	585300000	320830000	264470000	322390000	167230000	155160000	340230000	202550000	137680000	26902	1205	25485	168790;168791;168792;168793;168794;168795;168796;168797;168798;168799;168800	228444;228445;228446;228447;228448;228449;228450;228451;228452;228453;228454;228455;228456;228457;228458;228459	228459			15	
IYSSDSDEGSEEDK	1	Unmodified	1559.6111	0.61110597	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			11.406	10.863	2	0.00085092	8621	160511_QHF_FH_JSI10i_1	85.845	76.158			0.97053	0.95256	35.735	2	2	Median	0.92091	0.73987	NaN	1	1	Median	1.0228	1.2264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141830000	68554000	73271000	59749000	33332000	26417000	82076000	35222000	46854000	0	0	0	0	0	0	26903	3778	25486	168801;168802	228460;228461	228460			2	
IYTFNQSR	0	Unmodified	1027.5087	0.50869399	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	26.039	25.339	2	0.0025205	20937	160511_QHF_FH_JSI10i_3	79.469	54.574			0.96378	1.0461	5.5732	7	0	Median	1.2417	1.0394	NaN	1	0	Median	0.88062	1.051	0.64935	2	0	Median	1.0487	1.033	6.263	2	0	Median	0.93181	0.99927	10.923	2	0	Median	1702900000	867250000	835690000	230330000	93486000	136850000	436190000	234230000	201960000	547680000	275250000	272430000	488740000	264290000	224460000	26904	2772	25487	168803;168804;168805;168806;168807;168808;168809	228462;228463;228464;228465;228466;228467;228468	228464			7	
IYTSPTWSAFVTDSSWSAR	0	Unmodified	2161.0116	0.011633904	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	2	2		94.142	93.896	2;3	1.0099E-09	83279	160511_QHF_FH_JSI10i_2	116.51	100.57			1.0678	1.1098	17.445	5	2	Median	1.2851	1.1304	NaN	1	0	Median	0.79718	0.97836	17.827	2	0	Median	1.2564	1.2068	21.131	2	2	Median	NaN	NaN	NaN	0	0	Median	106370000	52946000	53421000	13055000	5858000	7197000	60448000	33650000	26798000	32864000	13438000	19426000	0	0	0	26905	2271	25488	168810;168811;168812;168813;168814	228469;228470;228471;228472;228473;228474;228475;228476;228477	228477			9	
IYVAELIQQLQQQALSEPAVVQK	1	Unmodified	2595.4272	0.42720278	2347	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	102.32	102.29	3	3.6411E-24	89110	160511_QHF_FH_JSI12i_3	159.77	156.5			0.87965	0.823	15.455	4	0	Median	0.87046	0.73742	NaN	1	0	Median	0.66808	0.82433	NaN	1	0	Median	0.88892	0.82168	NaN	1	0	Median	1.068	1.0617	NaN	1	0	Median	748680000	396000000	352680000	90181000	49754000	40427000	100530000	59430000	41099000	221340000	115290000	106050000	336630000	171520000	165100000	26906	2347	25489	168815;168816;168817;168818	228478;228479;228480;228481;228482;228483	228483			6	
IYVASVHQDLSDDDIK	1	Unmodified	1816.8843	0.88430813	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.84	2.94	3	9	6					1		2	4	7	6	53.5	52.302	2;3	9.9629E-41	45089	160511_QHF_FH_JSI11i_2	209.64	169.05			0.9322	0.93308	21.515	18	9	Median	1.046	0.90272	3.6674	2	0	Median	0.78663	0.93107	12.788	4	3	Median	0.95501	0.93799	20.263	7	4	Median	0.90785	1.0022	31.93	5	2	Median	2855200000	1457700000	1397500000	282760000	128840000	153920000	789920000	470570000	319350000	949300000	437730000	511570000	833210000	420530000	412670000	26907	5315	25490	168819;168820;168821;168822;168823;168824;168825;168826;168827;168828;168829;168830;168831;168832;168833;168834;168835;168836;168837	228484;228485;228486;228487;228488;228489;228490;228491;228492;228493;228494;228495;228496;228497;228498;228499;228500;228501;228502;228503;228504;228505;228506;228507;228508;228509;228510;228511	228503			28	
IYVDDGLISLQVK	1	Unmodified	1461.8079	0.80789571	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	3.06	9	7	5						1	6	7	4	5	84.716	84.114	2;3	1.3475E-30	76667	160511_QHF_FH_JSI10i_1	188.28	155.96			0.93212	0.93842	32.868	21	4	Median	1.0577	0.88149	58.891	6	2	Median	0.78048	0.94842	23.947	6	1	Median	0.96082	0.97217	13.701	4	0	Median	0.93525	0.94653	7.097	5	1	Median	10237000000	4800200000	5436600000	1527100000	688860000	838280000	2770400000	1289300000	1481100000	2697600000	1313400000	1384300000	3241700000	1508700000	1733000000	26908	1055	25491	168838;168839;168840;168841;168842;168843;168844;168845;168846;168847;168848;168849;168850;168851;168852;168853;168854;168855;168856;168857;168858;168859	228512;228513;228514;228515;228516;228517;228518;228519;228520;228521;228522;228523;228524;228525;228526;228527;228528;228529;228530;228531;228532;228533;228534;228535;228536;228537;228538;228539;228540;228541;228542;228543;228544;228545;228546;228547;228548;228549;228550;228551;228552;228553;228554;228555;228556;228557;228558;228559;228560;228561;228562;228563;228564;228565;228566;228567;228568;228569;228570;228571;228572;228573	228540			62	
IYVEIER	0	Unmodified	920.49673	0.49673232	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			42.26	41.252	2	0.017903	36400	160511_QHF_FH_JSI10i_2	60.76	24.574			0.99156	1.0179	6.8152	2	0	Median	1.1553	0.96999	NaN	1	0	Median	0.85102	1.0681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172030000	79839000	92194000	74966000	32771000	42195000	97067000	47068000	49999000	0	0	0	0	0	0	26909	110	25492	168860;168861	228574;228575	228575			2	
IYVGLSK	1	Unmodified	778.45889	0.45889025	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	38.106	36.754	2	0.048713	31251	160511_QHF_FH_JSI12i_2	43.124	28.711			1.1353	1.218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.218	NaN	1	0	Median	82013000	44377000	37636000	0	0	0	0	0	0	0	0	0	82013000	44377000	37636000	26910	403	25493	168862	228576	228576			1	
IYVGNASVAQDIPK	1	Unmodified	1473.7827	0.78274359	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	58.818	58.169	2;3	9.9169E-10	51676	160511_QHF_FH_JSI9i_1	146.16	125.29			0.84154	0.85049	8.7185	4	0	Median	0.97317	0.79978	NaN	1	0	Median	0.77198	0.90441	NaN	1	0	Median	0.79453	0.7804	NaN	1	0	Median	0.89133	0.92929	NaN	1	0	Median	410040000	209210000	200820000	80567000	42830000	37737000	114340000	63556000	50787000	120680000	60707000	59968000	94450000	42119000	52331000	26911	1734	25494	168863;168864;168865;168866;168867	228577;228578;228579;228580;228581;228582;228583;228584;228585	228585			9	
IYVGNLPPDIR	0	Unmodified	1255.6925	0.69247202	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.42	2	9						3		2	3	7	2	67.479	63.749	2	7.3742E-06	56891	160511_QHF_FH_JSI9i_2	102.62	67.184			1.4535	1.4211	16.075	10	3	Median	2.0811	1.7802	NaN	1	0	Median	1.4577	1.7637	24.577	3	1	Plateau	1.4752	1.4211	11.94	4	1	Median	1.3033	1.4209	15.406	2	1	Median	896990000	355090000	541900000	113830000	30745000	83088000	349520000	161200000	188310000	326010000	115090000	210920000	107640000	48052000	59585000	26912	2260	25495	168868;168869;168870;168871;168872;168873;168874;168875;168876;168877;168878;168879;168880;168881	228586;228587;228588;228589;228590;228591;228592;228593;228594;228595;228596;228597;228598;228599;228600;228601;228602;228603;228604	228595			19	
IYVGNLPTDVR	0	Unmodified	1245.6717	0.67173657	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	58.515	57.634	2	6.6071E-08	50012	160511_QHF_FH_JSI11i_2	125.82	103.73			1.1278	1.2419	22.338	7	2	Median	1.7033	1.4184	17.696	2	1	Median	1.1049	1.3641	13.278	2	1	Median	1.1188	1.1057	3.4392	2	0	Median	0.74763	0.81748	NaN	1	0	Median	1035900000	475600000	560320000	285200000	90864000	194340000	227360000	112460000	114900000	335850000	157490000	178360000	187510000	114790000	72723000	26913	2376	25496	168882;168883;168884;168885;168886;168887;168888	228605;228606;228607;228608;228609;228610;228611	228609			7	
IYVISLAEPR	0	Unmodified	1159.6601	0.66010926	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	6.51	1	3	3				1	4	4	3	4	4	5	73.401	67.677	2	4.7958E-06	33285	160513_QHF_FH_JSI10Kac_5	115.71	93.223			0.89926	0.99149	18.392	16	1	Median	1.4027	1.1986	24.775	3	1	Plateau	0.82441	1.0124	17.187	4	0	Median	1.0992	1.0532	9.7642	4	0	Median	0.85232	0.93265	20.353	5	0	Median	2069200000	1116100000	953110000	223940000	105570000	118370000	619090000	362590000	256500000	717240000	372040000	345200000	508920000	275880000	233040000	26914	1064	25497	168889;168890;168891;168892;168893;168894;168895;168896;168897;168898;168899;168900;168901;168902;168903;168904	228612;228613;228614;228615;228616;228617;228618;228619;228620;228621;228622;228623;228624;228625;228626;228627;228628;228629;228630;228631;228632	228628			21	
IYVLLRR	0	Unmodified	931.59672	0.59672114	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	49.319	40.002	3	0.0024835	21982	160513_QHF_FH_JSI10Kac_6	77.374	30.711			1.1928	1.2775	19.092	4	0	Median	1.6692	1.4262	NaN	1	0	Median	1.0032	1.1837	NaN	1	0	Median	1.4183	1.3787	NaN	1	0	Median	0.86797	0.9379	NaN	1	0	Median	538260000	199620000	338640000	149810000	48847000	100970000	352390000	135700000	216690000	14635000	4492800	10142000	21418000	10575000	10844000	26915	2127	25498	168905;168906;168907;168908	228633;228634;228635;228636;228637;228638	228638			6	
IYVMATHGILSAEAPR	0	Unmodified	1727.9029	0.9028755	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	66.843	62.012	2;3	7.6262E-17	33954	160513_QHF_FH_JSI10Kac_6	138.05	126.36			1.1409	1.125	10.402	8	1	Median	1.2947	1.0644	15.001	2	0	Median	0.9443	1.0913	11.454	2	0	Median	1.2388	1.1604	11.531	2	0	Median	1.0476	1.1	13.748	2	1	Median	1059500000	519650000	539880000	224340000	100400000	123950000	371420000	202310000	169110000	278910000	120500000	158410000	184860000	96446000	88415000	26916	2543	25499	168909;168910;168911;168912;168913;168914;168915;168916;168917	228639;228640;228641;228642;228643;228644;228645;228646;228647;228648;228649	228649			11	
IYVVDVGSEPR	0	Unmodified	1232.6401	0.6401021	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.46	5						4			1	2	2	4	55.741	50.017	2	8.7716E-05	45397	160511_QHF_FH_JSI11i_1	89.247	69.976			0.83439	0.87774	28.435	8	5	Median	0.97344	0.79531	NaN	1	0	Median	0.77795	0.92461	0.92551	2	2	Median	0.89762	0.87774	0.060258	2	1	Median	0.88414	0.9469	42.534	3	2	Plateau	1105200000	601560000	503670000	184630000	92129000	92501000	283500000	153570000	129930000	341410000	173520000	167900000	295690000	182350000	113340000	26917	2374	25500	168918;168919;168920;168921;168922;168923;168924;168925;168926	228650;228651;228652;228653;228654;228655;228656;228657;228658;228659;228660;228661;228662	228650			13	
IYVVGGYSWNNR	0	Unmodified	1426.6993	0.69934831	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	70.234	61.357	2	2.677E-09	33670	160513_QHF_FH_JSI10Kac_6	118.71	99.397			0.97208	1.0005	12.53	4	2	Median	1.4373	1.2203	NaN	1	1	Median	0.78053	0.92604	NaN	1	0	Median	1.0736	1.0537	NaN	1	0	Median	0.88013	0.95004	NaN	1	1	Median	193170000	104570000	88597000	42972000	18022000	24950000	99667000	62444000	37223000	33031000	14985000	18046000	17502000	9123700	8378600	26918	5221	25501	168927;168928;168929;168930	228663;228664;228665;228666;228667;228668	228667			6	
IYWGTATTGK	1	Unmodified	1096.5553	0.55530983	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.894	2	1	2								1	2	2	38.294	38.016	2	0.0058022	32474	160511_QHF_FH_JSI12i_2	55.461	28.859			0.82355	0.81932	33.79	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.3527	1.6104	NaN	1	0	Median	1.1776	1.1559	NaN	1	0	Median	0.82355	0.81932	NaN	1	1	Median	245020000	106400000	138620000	0	0	0	44754000	18871000	25883000	45118000	15265000	29853000	155150000	72259000	82888000	26919	1823	25502	168931;168932;168933;168934;168935	228669;228670;228671;228672;228673	228671			5	
IYWGTATTGKPHVAYFVPMSK	2	Unmodified	2353.1929	0.19290951	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	3	3	2	75.607	68.716	3;4	1.2952E-29	37455	160513_QHF_FH_JSI10Kac_6	160.77	125.13			0.90407	1.0508	38.661	10	5	Median	1.0091	0.871	49.541	2	1	Median	0.87265	0.99195	53.911	3	2	Median	0.75568	0.7246	27.744	3	2	Plateau	1.2142	1.2859	18.818	2	0	Median	2173500000	1312400000	861080000	327220000	158810000	168410000	1281900000	870930000	410980000	388400000	206120000	182270000	175990000	76579000	99411000	26920	1823	25503	168936;168937;168938;168939;168940;168941;168942;168943;168944;168945	228674;228675;228676;228677;228678;228679;228680;228681;228682;228683;228684;228685;228686	228685			13	
IYWGTATTGKPHVAYFVPMSK	2	Oxidation (M)	2369.1878	0.18782413	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	72.361	63.544	4	3.1632E-11	33233	160513_QHF_FH_JSI12Kac_6	101.89	88.707			0.99374	1.1444	7.9973	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98564	1.1354	NaN	1	1	Median	0.99374	0.99263	NaN	1	0	Median	1.0547	1.1444	NaN	1	0	Median	184270000	93209000	91059000	0	0	0	85634000	44444000	41190000	37194000	18718000	18475000	61440000	30046000	31394000	26921	1823	25503	168946;168947;168948	228687;228688;228689;228690	228689		1506	4	
IYWMNSK	1	Unmodified	940.44767	0.44767364	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	40.886	40.301	2	0.020108	34421	160511_QHF_FH_JSI12i_3	57.281	40.354			1.3017	1.3012	6.0431	3	1	Median	1.6113	1.3012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2565	1.1943	NaN	1	0	Median	1.3017	1.342	NaN	1	0	Median	602570000	239070000	363500000	83515000	26801000	56714000	0	0	0	206910000	89022000	117880000	312150000	123240000	188910000	26922	1388	25504	168949;168950;168951	228691;228692	228692			2	
IYWMNSKILHIK	2	Acetyl (K)	1586.8643	0.86430515	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.904	72.59	3	0.0012297	39982	160513_QHF_FH_JSI11Kac_6	66.498	54.627			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17086000	17086000	0	0	0	0	0	0	0	17086000	17086000	0	0	0	0	26923	1388	25505	168952	228693	228693	1343;1344		1	
IYYFAAVAHLHMGK	1	Oxidation (M)	1635.8232	0.82316861	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	65.679	56.513	4	0.00030922	29676	160513_QHF_FH_JSI12Kac_6	68.676	58.017			1.1897	1.2258	46.404	4	0	Median	0.75273	0.65649	NaN	1	0	Median	1.6919	1.9988	NaN	1	0	Median	1.3921	1.36	NaN	1	0	Median	1.0167	1.1049	NaN	1	0	Median	84245000	40796000	43449000	29763000	16732000	13032000	23346000	9476100	13870000	14047000	6290000	7757100	17089000	8297800	8790900	26924	4703	25506	168953;168954;168955;168956	228694;228695;228696;228697;228698	228696		2519	5	
IYYFAAVAHLHMGK	1	Unmodified	1619.8283	0.82825399	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	75.194	66.358	3;4	1.7769E-05	36048	160513_QHF_FH_JSI11Kac_6	94.191	83.724			0.89118	0.83239	65.056	5	1	Median	0.89118	0.76671	NaN	1	0	Median	0.69894	0.83239	NaN	1	0	Median	1.7072	1.6433	NaN	1	0	Median	0.49283	0.52707	90.879	2	1	Median	296700000	156980000	139710000	69518000	45519000	23999000	77548000	48728000	28820000	105830000	36133000	69701000	43797000	26604000	17193000	26925	4703	25506	168957;168958;168959;168960;168961	228699;228700;228701;228702;228703	228699			5	
IYYHVVETGSMGAR	0	Unmodified	1581.761	0.76096229	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.56		8	7						9	6	7	6	5	42.852	38.822	2;3	1.2358E-09	32966	160511_QHF_FH_JSI12i_3	143.89	121.8			1.0758	1.098	22.146	18	3	Median	1.2877	1.1304	39.157	5	1	Median	0.84343	1.0159	11.727	5	1	Median	1.2264	1.1775	9.6934	5	1	Median	0.96216	0.99545	20.969	3	0	Median	2090300000	959150000	1131100000	218590000	97662000	120930000	396260000	204360000	191900000	908320000	394220000	514110000	567120000	262910000	304210000	26926	4316	25507	168962;168963;168964;168965;168966;168967;168968;168969;168970;168971;168972;168973;168974;168975;168976;168977;168978;168979;168980;168981;168982;168983;168984;168985	228704;228705;228706;228707;228708;228709;228710;228711;228712;228713;228714;228715;228716;228717;228718;228719;228720;228721;228722;228723;228724;228725;228726;228727;228728;228729;228730;228731;228732;228733;228734;228735	228728			31	
IYYHVVETGSMGAR	0	Oxidation (M)	1597.7559	0.75587691	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	3	2	2	6	35.208	28.88	2;3	5.5234E-05	24060	160511_QHF_FH_JSI12i_3	83	67.428			0.93265	1.0017	17.67	10	2	Median	1.3705	1.1826	16.955	2	1	Median	0.81753	0.96935	8.6001	2	0	Median	1.1894	1.1326	10.14	2	0	Median	0.848	0.93359	15.895	4	1	Median	300310000	157820000	142490000	26856000	9753100	17103000	42387000	22849000	19537000	86814000	40002000	46811000	144250000	85218000	59036000	26927	4316	25507	168986;168987;168988;168989;168990;168991;168992;168993;168994;168995;168996;168997;168998	228736;228737;228738;228739;228740;228741;228742;228743;228744;228745;228746;228747	228741		2442	12	
IYYPDFIVPDPK	1	Unmodified	1465.7493	0.74931819	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		85.498	85.133	2	0.036934	77593	160511_QHF_FH_JSI11i_1	46.462	29.026			0.97974	0.93595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97974	0.93595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9818500	4529900	5288600	0	0	0	0	0	0	9818500	4529900	5288600	0	0	0	26928	1694	25508	168999	228748	228748			1	
IYYPDFIVPDPKK	2	Unmodified	1593.8443	0.84428121	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	74.918	74.115	3	0.015223	64229	160511_QHF_FH_JSI12i_2	34.685	27.803			1.2217	1.2923	18.609	6	5	Median	1.8279	1.5876	NaN	1	1	Median	1.0641	1.3006	20.41	2	2	Median	1.2927	1.2923	8.7961	2	2	Median	0.88254	0.97036	NaN	1	0	Median	139620000	67581000	72038000	15036000	5905800	9130000	45877000	24343000	21534000	58966000	27226000	31739000	19741000	10105000	9635600	26929	1694	25509	169000;169001;169002;169003;169004;169005	228749;228750;228751;228752;228753;228754;228755;228756	228750			8	
IYYTTERDEQGSK	1	Unmodified	1588.7369	0.73691561	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	14.64	14.671	2;3	0.0020917	11895	160511_QHF_FH_JSI11i_3	51.546	37.957			1.145	1.1048	21.143	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.386	1.283	NaN	1	0	Median	0.94599	0.95141	NaN	1	0	Median	233550000	117090000	116470000	0	0	0	0	0	0	112460000	46470000	65989000	121100000	70618000	50478000	26930	2549	25510	169006;169007;169008	228757;228758;228759;228760	228757			4	
IYYVDHFTR	0	Unmodified	1212.5928	0.59275797	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		49.22	39.518	3	0.027732	21493	160513_QHF_FH_JSI11Kac_6	23.226	15.122			1.0777	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0777	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4622800	1787400	2835400	0	0	0	0	0	0	4622800	1787400	2835400	0	0	0	26931	4133	25511	169009;169010	228761;228762	228761			2	
IYYYHVITR	0	Unmodified	1226.6448	0.64479354	4553	Q9BYW2	SETD2	Histone-lysine N-methyltransferase SETD2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	48.378	39.073	2;3	0.00032782	20833	160513_QHF_FH_JSI9Kac_6	70.552	48.506			0.98883	0.98252	7.1521	8	0	Median	1.086	0.92569	3.6879	2	0	Median	0.83363	0.98735	1.4635	2	0	Median	1.1649	1.0974	5.6036	2	0	Median	0.89702	0.97361	2.0596	2	0	Median	381630000	190340000	191300000	69581000	28109000	41472000	207280000	113700000	93576000	71776000	32454000	39321000	32997000	16070000	16927000	26932	4553	25512	169011;169012;169013;169014;169015;169016;169017;169018	228763;228764;228765;228766;228767;228768;228769;228770;228771;228772;228773	228765			11	
KADCTITMADSDFLALMTGK	2	Unmodified	2188.0214	0.021412008	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.77	100.79	3	8.0532E-15	87358	160511_QHF_FH_JSI12i_3	152.06	138.63			1.2479	1.2606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2479	1.2606	NaN	1	0	Median	164610000	69453000	95156000	0	0	0	0	0	0	0	0	0	164610000	69453000	95156000	26933	1207	25513	169019	228774;228775	228774			2	
KADELQK	2	Unmodified	830.44978	0.44978213	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	5.3116	4.7403	2	0.011426	2715	160511_QHF_FH_JSI12i_2	71.379	7.1149			0.6436	0.71411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6436	0.71411	NaN	1	0	Median	141490000	71516000	69970000	0	0	0	0	0	0	0	0	0	141490000	71516000	69970000	26934	2100	25514	169020	228776;228777	228776			2	
KADEVLEILK	2	Unmodified	1156.6703	0.67033959	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							1	2	6	4	56.362	55.83	2;3	0.0015693	48293	160511_QHF_FH_JSI11i_2	61.344	35.226			0.80702	0.88173	49.196	13	12	Median	1.1033	0.91262	NaN	1	1	Median	0.5893	0.72088	1.15	2	2	Median	1.1351	1.0922	54.552	6	6	Median	1.1716	1.2277	58.117	4	3	Median	589620000	290690000	298930000	35064000	17680000	17384000	81255000	48121000	33134000	309740000	147060000	162680000	163560000	77823000	85737000	26935	552	25515	169021;169022;169023;169024;169025;169026;169027;169028;169029;169030;169031;169032;169033	228778;228779;228780;228781;228782;228783;228784;228785;228786;228787;228788;228789;228790	228782			13	
KADGLLGMFLK	2	Unmodified	1191.6686	0.66856545	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	86.22	85.78	2;3	1.7856E-05	74488	160511_QHF_FH_JSI12i_3	78.692	62.06			0.99842	0.96975	18.56	6	0	Median	1.0139	0.80924	NaN	1	0	Median	0.72382	0.83073	NaN	1	0	Median	1.2678	1.1747	19.924	2	0	Median	0.95998	0.96975	5.2064	2	0	Median	411770000	186500000	225270000	48984000	26361000	22623000	46384000	25710000	20674000	150900000	56453000	94451000	165500000	77971000	87526000	26936	3562	25516	169034;169035;169036;169037;169038;169039	228791;228792;228793;228794;228795;228796;228797;228798;228799;228800;228801;228802;228803;228804;228805;228806;228807;228808;228809;228810;228811	228810			21	
KADGLLGMFLK	2	Oxidation (M)	1207.6635	0.66348007	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	1	1	By MS/MS			By MS/MS	3	0			2							1			1	71.469	70.581	3	0.0029385	61006	160511_QHF_FH_JSI12i_3	49.081	39.892			1.1829	1.1481	11.768	2	0	Median	1.4413	1.2477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97088	1.0564	NaN	1	0	Median	15345000	7097500	8247300	5565900	2621000	2944900	0	0	0	0	0	0	9778900	4476500	5302400	26937	3562	25516	169040;169041	228812	228812		2269	1	
KADGVHTVEPTEAGDYK	2	Unmodified	1815.8639	0.86390703	2418	Q13445	TMED1	Transmembrane emp24 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	2	2	1	23.304	22.764	3;4	9.7493E-06	19756	160511_QHF_FH_JSI10i_2	68.243	61.185			1.3378	1.2593	33.036	6	1	Median	1.4969	1.3004	12.168	2	0	Median	1.0755	1.329	NaN	1	0	Median	1.757	1.6759	50.715	2	1	Median	0.88958	0.88512	NaN	1	0	Median	343850000	150280000	193580000	48346000	18884000	29463000	40115000	17466000	22649000	100150000	37858000	62296000	155240000	76068000	79168000	26938	2418	25517	169042;169043;169044;169045;169046;169047;169048	228813;228814;228815;228816;228817;228818;228819;228820	228818			8	
KADGYNQPDSK	2	Unmodified	1221.5626	0.56258006	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	5.7972	5.4074	2	0.0021405	3279	160511_QHF_FH_JSI11i_2	58.676	46.63			0.87368	0.8969	16.543	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.0082	NaN	1	0	Median	0.75212	0.79789	NaN	1	1	Median	59234000	28331000	30902000	0	0	0	0	0	0	32701000	12890000	19810000	26533000	15441000	11092000	26939	423;326	25518	169049;169050;169051	228821;228822;228823	228822			3	
KADIDLTK	2	Unmodified	902.5073	0.50729701	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	17.509	16.988	2;3	0.001496	13778	160511_QHF_FH_JSI11i_2	89.047	35.08			0.88903	0.97417	47.207	11	3	Median	1.1705	0.99908	3.5708	2	0	Median	0.61894	0.75647	0.14972	2	0	Median	1.4644	1.4135	67.046	3	1	Median	0.81371	0.89952	59.292	4	2	Median	4833300000	2193700000	2639600000	735380000	245190000	490190000	786520000	442050000	344470000	1580200000	644970000	935240000	1731200000	861480000	869730000	26940	1993	25519	169052;169053;169054;169055;169056;169057;169058;169059;169060;169061;169062	228824;228825;228826;228827;228828;228829;228830;228831;228832;228833;228834;228835;228836;228837;228838;228839	228834			16	
KADIGVAMGIAGSDVSK	2	Unmodified	1617.8396	0.83960654	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							2	1		1	53.47	52.736	2;3	3.5628E-05	46619	160511_QHF_FH_JSI10i_2	88.768	74.349			0.97337	0.99018	17.646	3	1	Plateau	1.1193	0.9583	NaN	1	0	Median	0.58533	0.71853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97337	0.99018	NaN	1	1	Median	1798000000	802550000	995490000	34305000	18451000	15854000	31410000	20438000	10972000	0	0	0	1732300000	763660000	968660000	26941	821;1032	25520	169063;169064;169065;169066	228840;228841;228842;228843	228842			4	
KADIGVAMGIAGSDVSK	2	Oxidation (M)	1633.8345	0.83452116	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	1	1				By MS/MS	3	0			1										1	39.167	38.987	3	0.022058	33198	160511_QHF_FH_JSI12i_3	33.248	25.878			0.76786	0.7864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76786	0.7864	NaN	1	0	Median	66650000	37899000	28751000	0	0	0	0	0	0	0	0	0	66650000	37899000	28751000	26942	821;1032	25520	169067	228844	228844			1	
KADNVVNIAR	1	Unmodified	1098.6146	0.61455605	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		18.443	17.879	2;3	0.00085579	14888	160511_QHF_FH_JSI11i_3	67.726	54.372			1.0107	1.0441	54.861	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3197	1.5389	NaN	1	0	Median	0.77409	0.70837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129150000	56476000	72672000	0	0	0	37782000	15322000	22460000	91365000	41153000	50212000	0	0	0	26943	3862	25521	169068;169069;169070	228845;228846	228845			2	
KADPAAVVK	2	Unmodified	897.52837	0.5283668	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	11.152	11.197	2	0.0050469	8845	160511_QHF_FH_JSI11i_3	56.258	28.084			1.2059	1.1787	20.125	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4296	1.359	NaN	1	0	Median	1.0173	1.0224	NaN	1	0	Median	167750000	76481000	91271000	0	0	0	0	0	0	61031000	28632000	32399000	106720000	47849000	58872000	26944	3537	25522	169071;169072	228847	228847			1	
KADSSTNIFNPR	1	Unmodified	1348.6735	0.67352749	691	O95399	UTS2	Urotensin-2	yes	yes	0	0	0	1	By matching			By MS/MS	2	0		2								1			1	33.751	32.565	2	0.044041	27725	160511_QHF_FH_JSI12i_2	37.556	2.8351			0.74777	0.73288	3.9285	2	0	Median	0.82861	0.7128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67481	0.75352	NaN	1	0	Median	159780000	88508000	71276000	38211000	12846000	25365000	0	0	0	0	0	0	121570000	75662000	45911000	26945	691	25523	169073;169074	228848	228848			1	
KADSVANQGTK	2	Unmodified	1117.5728	0.57275081	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	2.87	6	7	4				1			2	4	7	5	4.7123	4.0825	2;3	5.4264E-07	2229	160511_QHF_FH_JSI12i_3	128.28	103.36			0.88488	0.91087	14.977	18	0	Median	0.94436	0.80485	8.9865	2	0	Median	0.64148	0.7966	9.8563	4	0	Linear	1.0905	1.0306	19.556	7	0	Median	0.88181	0.92411	5.6841	5	0	Median	3213100000	1716700000	1496400000	297810000	156100000	141710000	528450000	313290000	215160000	944480000	446240000	498230000	1442400000	801020000	641330000	26946	5213	25524	169075;169076;169077;169078;169079;169080;169081;169082;169083;169084;169085;169086;169087;169088;169089;169090;169091;169092	228849;228850;228851;228852;228853;228854;228855;228856;228857;228858;228859;228860;228861;228862;228863;228864	228864			16	
KADVDAIHEYLLLK	2	Unmodified	1626.8981	0.8981077	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	67.859	67.561	3	2.945E-05	58398	160511_QHF_FH_JSI12i_3	111.74	99.948			1.2001	1.2029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2001	1.2029	NaN	1	1	Median	91277000	48383000	42893000	0	0	0	0	0	0	0	0	0	91277000	48383000	42893000	26947	5347	25525	169093;169094	228865;228866	228866			2	
KADVEEEFLAFRK	2	Unmodified	1580.8199	0.81985737	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	By MS/MS		By MS/MS		3	0			2							1		1		57.755	56.983	3	3.7483E-05	50309	160511_QHF_FH_JSI11i_3	78.985	56.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26948	1576	25526	169095;169096	228867;228868	228867			2	
KADVEEEFLALRK	2	Unmodified	1546.8355	0.83550744	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	2			By MS/MS		3	0			1									1		54.376	54.376	3	0.0023317	48144	160511_QHF_FH_JSI11i_3	63.989	50.026			1.4136	1.3702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4136	1.3702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63915000	29915000	34000000	0	0	0	0	0	0	63915000	29915000	34000000	0	0	0	26949	1576	25527	169097	228869	228869			1	
KADVGFAMGIAGTDVAK	2	Unmodified	1649.8447	0.84469192	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	60.3	60.166	2;3	2.4254E-05	53415	160511_QHF_FH_JSI11i_3	103.85	73.917			1.1095	1.0433	1.5209	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1732	1.0546	NaN	1	1	Median	1.0492	1.0321	NaN	1	1	Median	376270000	216260000	160010000	0	0	0	0	0	0	33862000	14076000	19786000	342410000	202190000	140220000	26950	1239;1168;2177;2758	25528	169098;169099	228870;228871	228870			2	
KADVIPVHYYLIPPPTK	2	Unmodified	1950.0979	0.097870136	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	69.597	68.911	4	6.3898E-05	59543	160511_QHF_FH_JSI12i_3	68.653	63.323			0.93362	0.93783	15.431	5	0	Median	1.1589	0.99322	NaN	1	0	Median	0.83477	1.0125	25.068	2	0	Median	0.87227	0.81859	NaN	1	0	Median	0.93362	0.93783	NaN	1	0	Median	212390000	107650000	104740000	20985000	10915000	10070000	45352000	27860000	17493000	58562000	28657000	29906000	87488000	40217000	47271000	26951	1316	25529	169100;169101;169102;169103;169104	228872;228873;228874;228875;228876;228877;228878;228879;228880;228881;228882	228882			11	
KAEAAASALADADADLEER	1	Unmodified	1915.9123	0.91231379	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		51.838	50.898	2;3	4.5989E-06	44930	160511_QHF_FH_JSI10i_2	85.166	68.482			0.82861	1.039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82861	1.039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95442000	54902000	40540000	0	0	0	95442000	54902000	40540000	0	0	0	0	0	0	26952	348	25530	169105;169106	228883;228884	228884			2	
KAEAFQLYQEAAQLDMLLEK	2	Unmodified	2338.1879	0.18788371	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.4	101.41	3	1.9495E-06	88076	160511_QHF_FH_JSI12i_3	84.573	76.182			0.50428	0.52216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50428	0.52216	NaN	1	0	Median	202210000	129290000	72922000	0	0	0	0	0	0	0	0	0	202210000	129290000	72922000	26953	590	25531	169107	228885	228885			1	
KAEAGAGSATEFQFR	1	Unmodified	1568.7583	0.75831975	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.66	5.62		11	11					3	4	7	9	7	6	36.986	34.085	2;3	2.2613E-15	29260	160511_QHF_FH_JSI11i_3	167.61	145.57			0.93177	0.96093	19.738	29	1	Median	1.1885	1.0255	14.869	7	0	Median	0.79033	0.96093	29.406	9	1	Median	0.93177	0.93213	6.2306	7	0	Median	0.8593	0.88424	16.586	6	0	Median	10898000000	5281700000	5616700000	1538300000	633460000	904850000	4386900000	2158800000	2228100000	4208700000	2081800000	2126800000	764530000	407640000	356890000	26954	1595	25532	169108;169109;169110;169111;169112;169113;169114;169115;169116;169117;169118;169119;169120;169121;169122;169123;169124;169125;169126;169127;169128;169129;169130;169131;169132;169133;169134;169135;169136	228886;228887;228888;228889;228890;228891;228892;228893;228894;228895;228896;228897;228898;228899;228900;228901;228902;228903;228904;228905;228906;228907;228908;228909;228910;228911;228912;228913;228914;228915;228916;228917;228918;228919;228920;228921;228922;228923;228924;228925;228926;228927;228928;228929;228930;228931;228932;228933;228934;228935;228936;228937;228938;228939;228940;228941;228942;228943;228944;228945;228946;228947	228891			62	
KAEALEAAIENLNEAK	2	Unmodified	1712.8945	0.89447888	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		63.695	63.695	3	0.00010652	56659	160511_QHF_FH_JSI11i_3	70.784	55.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26955	5352	25533	169137	228948	228948			1	
KAEAQIAAK	2	Unmodified	928.53418	0.53418046	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.83		2	4					3		2	3	1	3	6.9978	3.7088	2;3	7.1675E-05	3988	160511_QHF_FH_JSI11i_3	96.331	55.302			1.0568	1.0678	38.016	9	1	Median	1.7701	1.506	0.75398	2	0	Median	0.52453	0.61426	18.161	3	1	Median	0.87882	0.81409	NaN	1	0	Median	1.2042	1.1691	11.482	3	0	Plateau	2356500000	1157600000	1199000000	100860000	24778000	76080000	87158000	54441000	32717000	378860000	220430000	158430000	1789700000	857930000	931730000	26956	773	25534	169138;169139;169140;169141;169142;169143;169144;169145;169146	228949;228950;228951;228952;228953;228954;228955;228956;228957;228958;228959	228950			9	
KAEAQIAAKNLDK	3	Acetyl (K)	1440.7936	0.79364262	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	2	1	37.197	27.544	3	0.00064823	14897	160513_QHF_FH_JSI12Kac_5	83.692	54.886			0.76655	0.75075	66.151	6	0	Median	1.7927	1.5117	NaN	1	0	Median	0.3776	0.4493	3.4134	2	0	Median	0.76655	0.75075	24.787	2	0	Median	2.031	2.253	NaN	1	0	Median	56927000	31584000	25343000	10713000	4263700	6449800	17184000	11514000	5670500	19828000	12261000	7567000	9201200	3545600	5655600	26957	773	25535	169147;169148;169149;169150;169151;169152	228960;228961;228962;228963;228964	228963	380		5	
KAEDLFQDAYYQSPETR	1	Unmodified	2059.9487	0.9486993	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	55.556	54.79	3	1.4532E-07	46958	160511_QHF_FH_JSI12i_3	92.307	80.161			1.7148	1.6081	71.228	2	2	Median	1.1238	0.97179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6166	2.661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128300000	50425000	77871000	42955000	25330000	17625000	0	0	0	85341000	25094000	60246000	0	0	0	26958	713	25536	169153;169154;169155;169156	228965;228966;228967;228968	228968			4	
KAEEAGGTRLEPLKPLK	3	Acetyl (K)	1878.0575	0.057461885	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	1	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								6	8	4	4	3	3	52.535	42.664	3;4	0.0016936	22826	160513_QHF_FH_JSI11Kac_6	70.96	55.076			0.054415	0.055556	24.363	14	14	Median	0.035665	0.030332	40.329	4	4	Linear	0.046926	0.056411	17.617	4	4	Median	0.057979	0.054179	5.6398	3	3	Median	0.055261	0.058203	9.962	3	3	Plateau	1758000000	1696700000	61358000	396220000	386410000	9807800	698370000	678030000	20344000	358920000	341710000	17209000	304500000	290500000	13997000	26959	5403	25537	169157;169158;169159;169160;169161;169162;169163;169164;169165;169166;169167;169168;169169;169170	228969;228970;228971;228972;228973;228974;228975;228976;228977;228978;228979;228980;228981;228982;228983;228984	228971	3397		16	
KAEEEAEAKPK	3	Acetyl (K)	1270.6405	0.64049603	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	12.531	4.9766	3	0.010735	4969	160513_QHF_FH_JSI12Kac_4	55.04	19.517			0.90228	0.96133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90228	0.96133	NaN	1	0	Median	5270900	2587400	2683500	0	0	0	0	0	0	0	0	0	5270900	2587400	2683500	26960	4449	25538	169171	228985;228986	228986	3165		2	
KAEEELGELEAK	2	Unmodified	1344.6773	0.67727546	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	30.354	29.44	2;3	0.0021179	25578	160511_QHF_FH_JSI9i_2	76.522	62.404			1.2068	1.1418	52.576	4	4	Median	1.005	0.8604	NaN	1	1	Median	0.47681	0.58243	NaN	1	1	Median	1.449	1.5152	NaN	1	1	Median	1.696	1.8364	NaN	1	1	Median	161600000	87609000	73995000	41244000	18671000	22573000	23405000	16408000	6997500	39640000	13667000	25973000	57314000	38863000	18452000	26961	5479	25539	169172;169173;169174;169175;169176;169177	228987;228988;228989;228990;228991;228992	228988			6	
KAEEIANEMIEAAK	2	Unmodified	1545.7709	0.77085827	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							3	2	3	7	50.426	49.712	2;3	4.1206E-10	42924	160511_QHF_FH_JSI11i_2	160.27	135.98			0.69651	0.78957	85.958	15	12	Median	1.6558	1.4236	79.414	3	3	Median	0.53158	0.65774	37.658	2	1	Median	0.76871	0.78957	90.105	3	2	Median	0.6427	0.65667	108.31	7	6	Median	4383500000	2215600000	2167900000	795980000	360570000	435410000	751820000	485770000	266040000	804420000	454500000	349920000	2031300000	914760000	1116600000	26962	1664	25540	169178;169179;169180;169181;169182;169183;169184;169185;169186;169187;169188;169189;169190;169191;169192	228993;228994;228995;228996;228997;228998;228999;229000;229001;229002;229003;229004;229005;229006;229007;229008;229009;229010;229011;229012;229013;229014;229015;229016	229004			24	
KAEELDRR	1	Unmodified	1015.5411	0.54105675	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			5.0198	4.5427	3	0.020197	2623	160511_QHF_FH_JSI10i_3	44.863	30.745			0.66228	0.74375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66228	0.74375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140640000	83544000	57096000	0	0	0	140640000	83544000	57096000	0	0	0	0	0	0	26963	210	25541	169193	229017	229017			1	
KAEENAEGGESALGPDGEPIDESSQMSDLPVK	2	Unmodified	3285.4831	0.48307527	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	64.461	63.822	3	4.6885E-07	58093	160511_QHF_FH_JSI12i_1	57.496	51.336			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18186000	0	18186000	0	0	0	0	0	0	0	0	0	18186000	0	18186000	26964	1736	25542	169194	229018;229019	229018			2	
KAEENFQK	2	Unmodified	992.49271	0.49270958	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.0336	6.1292	2	0.0029389	3724	160511_QHF_FH_JSI12i_3	76.679	55.809			0.69432	0.70012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69432	0.70012	NaN	1	0	Median	79535000	46844000	32691000	0	0	0	0	0	0	0	0	0	79535000	46844000	32691000	26965	942	25543	169195	229020	229020			1	
KAEGAATEEEGTPK	2	Unmodified	1416.6733	0.67325272	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.67	13	8	8			3	4	5		7	9	12	13	7.5848	5.0427	2;3	1.8355E-21	4893	160511_QHF_FH_JSI10i_2	176.25	155.55			0.91266	0.9622	17.352	40	10	Median	1.1877	0.97205	16.771	7	2	Median	0.86335	1.0361	14.4	9	2	Median	0.92719	0.91807	19.058	12	4	Median	0.83378	0.90108	18.651	12	2	Median	27712000000	14345000000	13367000000	3838000000	1815200000	2022800000	8024800000	4657900000	3366800000	6876800000	3200500000	3676300000	8971900000	4671300000	4300600000	26966	2101	25544	169196;169197;169198;169199;169200;169201;169202;169203;169204;169205;169206;169207;169208;169209;169210;169211;169212;169213;169214;169215;169216;169217;169218;169219;169220;169221;169222;169223;169224;169225;169226;169227;169228;169229;169230;169231;169232;169233;169234;169235;169236	229021;229022;229023;229024;229025;229026;229027;229028;229029;229030;229031;229032;229033;229034;229035;229036;229037;229038;229039;229040;229041;229042;229043;229044;229045;229046;229047;229048;229049;229050;229051;229052;229053;229054;229055;229056;229057;229058;229059;229060;229061;229062;229063;229064;229065;229066;229067;229068;229069;229070;229071;229072;229073;229074;229075;229076	229070			56	
KAEGAPNQGR	1	Unmodified	1026.5207	0.52065566	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By matching			2	0		2								1	1			2.5593	2.1928	3	0.0013215	1082	160511_QHF_FH_JSI9i_2	43.77	34.907			0.82583	0.86326	56.169	2	0	Median	1.4487	1.2842	NaN	1	0	Median	0.47077	0.5803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25415000	12176000	13239000	15956000	6180500	9775000	9459200	5995400	3463800	0	0	0	0	0	0	26967	5213	25545	169237;169238	229077	229077			1	
KAEGGGGGGRPGAPAAGDGK	2	Unmodified	1665.8183	0.81829425	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.56	0.497		4	5							5	4			5.8175	5.3454	2;3;4	9.7958E-06	3327	160511_QHF_FH_JSI9i_3	57.806	46.114			1.0831	0.85341	33.657	9	0	Median	1.0831	0.85028	22.507	5	0	Median	0.97507	1.1449	44.934	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1736900000	890800000	846150000	1178200000	589690000	588520000	558740000	301110000	257630000	0	0	0	0	0	0	26968	2161	25546	169239;169240;169241;169242;169243;169244;169245;169246;169247	229078;229079;229080;229081;229082;229083;229084;229085;229086;229087	229083			10	
KAEGTPNQGK	2	Unmodified	1028.5251	0.52507234	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.426	5	16								6	7	5	3	1.0159	0.69253	2;3	0.00010985	377	160511_QHF_FH_JSI10i_2	86.898	65.434			1.2701	1.3606	105.65	19	8	Median	1.5494	1.3137	108.61	6	4	Median	1.4562	1.729	129.84	6	2	Median	0.40958	0.41732	65.111	4	2	Median	1.4211	1.4754	18.692	3	0	Median	1185100000	634220000	550880000	501250000	266260000	234990000	450480000	228230000	222260000	129260000	87041000	42218000	104110000	52694000	51416000	26969	5213	25547	169248;169249;169250;169251;169252;169253;169254;169255;169256;169257;169258;169259;169260;169261;169262;169263;169264;169265;169266;169267;169268	229088;229089;229090;229091;229092;229093;229094;229095;229096;229097;229098;229099;229100;229101;229102;229103;229104;229105;229106;229107;229108;229109;229110;229111	229111			24	
KAEGTVFTEEDFQK	2	Unmodified	1627.773	0.77296676	3366	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.816	40.606	3	0.022625	34707	160511_QHF_FH_JSI12i_3	35.836	28.797			0.52688	0.55694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52688	0.55694	NaN	1	1	Median	58335000	32894000	25441000	0	0	0	0	0	0	0	0	0	58335000	32894000	25441000	26970	3366	25548	169269	229112	229112			1	
KAEHLDFK	2	Unmodified	986.51853	0.5185304	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	11.793	11.837	3	0.0043128	9481	160511_QHF_FH_JSI11i_3	44.203	34.407			0.89537	0.87669	17.074	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82819	0.77699	NaN	1	0	Median	0.96799	0.9892	NaN	1	0	Median	737390000	365040000	372350000	0	0	0	0	0	0	133600000	77558000	56045000	603790000	287480000	316300000	26971	1685	25549	169270;169271	229113;229114;229115;229116	229114			4	
KAEHQVGEDGFLLK	2	Unmodified	1569.8151	0.81510635	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	1				By MS/MS	3	0			1										1	35.739	35.606	3	0.0013554	30162	160511_QHF_FH_JSI12i_3	53.491	41.514			0.95441	0.97939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95441	0.97939	NaN	1	0	Median	64179000	36812000	27368000	0	0	0	0	0	0	0	0	0	64179000	36812000	27368000	26972	1530;1750	25550	169272	229117	229117			1	
KAEIGIAMGSGTAVAK	2	Unmodified	1502.8127	0.81266351	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		6	6						3	5	4	4	2	43.086	40.646	2;3	5.6844E-07	34480	160511_QHF_FH_JSI12i_3	156.17	127.97			0.98431	0.99421	20.687	15	4	Median	1.2464	1.0656	29.85	5	3	Median	0.92447	0.91355	19.37	4	1	Linear	1.0491	1.0109	9.835	4	0	Median	0.84061	0.85091	7.872	2	0	Median	3369100000	1740100000	1629000000	241850000	95310000	146540000	633470000	368600000	264870000	794920000	358690000	436230000	1698900000	917480000	781400000	26973	1103	25551	169273;169274;169275;169276;169277;169278;169279;169280;169281;169282;169283;169284;169285;169286;169287	229118;229119;229120;229121;229122;229123;229124;229125;229126;229127;229128;229129;229130;229131;229132;229133;229134;229135;229136	229134			19	
KAEIGIAMGSGTAVAK	2	Oxidation (M)	1518.8076	0.80757813	1103	P16615;O14983;Q93084	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	27.849	27.826	3	0.0044999	23190	160511_QHF_FH_JSI12i_3	42.58	37.485			0.8797	0.87807	15.67	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81838	0.78597	NaN	1	0	Median	0.94561	0.98096	NaN	1	0	Median	169790000	94273000	75514000	0	0	0	0	0	0	55038000	31958000	23081000	114750000	62316000	52434000	26974	1103	25551	169288;169289	229137;229138	229138		742	1	
KAEIMESIK	2	Unmodified	1047.5634	0.56343168	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.75	0.433		1	3								1		3	24.388	24.143	2;3	0.0027929	19955	160511_QHF_FH_JSI12i_3	77.379	44.769			0.68693	0.69556	80.647	4	4	Median	NaN	NaN	NaN	0	0	Median	0.28792	0.33932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.31	1.3393	78.862	3	3	Median	375060000	231250000	143810000	0	0	0	16796000	12226000	4570400	0	0	0	358270000	219030000	139240000	26975	2560	25552	169290;169291;169292;169293	229139;229140;229141;229142;229143	229143			5	
KAELEENQR	1	Unmodified	1115.5571	0.55710075	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.8069	5.8069	2	0.0069831	3573	160511_QHF_FH_JSI11i_3	54.066	42.473			1.1236	1.0305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1236	1.0305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51533000	20818000	30715000	0	0	0	0	0	0	51533000	20818000	30715000	0	0	0	26976	1581	25553	169294	229144	229144			1	
KAELLDNEK	2	Unmodified	1058.5608	0.56078914	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.42	2	11	9				1	1		4	5	8	7	14.221	13.073	2;3	3.6915E-05	10515	160511_QHF_FH_JSI11i_3	120.09	79.061			0.9363	0.90838	65.671	20	16	Median	1.1101	0.90215	92.667	3	2	Median	0.74481	0.91465	25.906	3	1	Median	0.86484	0.8124	74.829	7	6	Median	1.0415	1.1155	69.373	7	7	Median	13944000000	7110300000	6833400000	942770000	555870000	386900000	708830000	362530000	346300000	4162300000	2242800000	1919500000	8129800000	3949100000	4180700000	26977	4837	25554	169295;169296;169297;169298;169299;169300;169301;169302;169303;169304;169305;169306;169307;169308;169309;169310;169311;169312;169313;169314;169315;169316;169317;169318	229145;229146;229147;229148;229149;229150;229151;229152;229153;229154;229155;229156;229157;229158;229159;229160;229161;229162;229163;229164;229165;229166;229167;229168;229169;229170	229147			26	
KAELLDNEKPAAVVAPITTGYTVK	3	Unmodified	2527.3898	0.38975464	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	4	2	2	67.715	67.016	3;4	3.0489E-17	59378	160511_QHF_FH_JSI11i_3	127.14	124.53			0.86954	0.94162	7.6168	10	1	Median	1.1204	0.98673	5.4858	2	1	Median	0.72537	0.92571	7.2555	4	0	Linear	1.0431	0.98615	7.6679	2	0	Median	0.86136	0.86976	7.1933	2	0	Median	1462000000	700640000	761340000	144190000	65834000	78360000	349760000	175490000	174270000	604150000	277210000	326940000	363880000	182110000	181780000	26978	4837	25555	169319;169320;169321;169322;169323;169324;169325;169326;169327;169328	229171;229172;229173;229174;229175;229176;229177;229178;229179;229180;229181;229182;229183;229184;229185;229186	229171			15	
KAENAEGQTPAIGPDGEPLDETSQMSDLPVK	2	Unmodified	3223.5191	0.51906685	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	69.363	68.938	3	3.4866E-17	62718	160511_QHF_FH_JSI11i_1	94.261	80.102			1.1593	1.2262	26.779	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65701	0.74915	NaN	1	0	Median	1.1857	1.1495	NaN	1	0	Median	1.1593	1.2262	NaN	1	0	Median	106030000	54422000	51605000	0	0	0	34985000	21986000	12999000	35028000	15337000	19691000	36014000	17099000	18915000	26979	1737	25556	169329;169330;169331	229187;229188;229189;229190;229191	229188			4	
KAEPMQWASLELPAAK	2	Unmodified	1768.9182	0.91819121	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	71.985	71.463	2;3	6.2189E-06	61961	160511_QHF_FH_JSI12i_3	107.5	103.25			1.2372	1.2106	62.909	7	2	Median	1.4427	1.2106	NaN	1	0	Median	1.0895	1.3106	122.45	2	1	Median	1.451	1.3778	69.617	2	0	Median	0.91036	0.92249	44.614	2	1	Median	875440000	377360000	498090000	50021000	20674000	29347000	244370000	80305000	164060000	237510000	108430000	129080000	343540000	167950000	175590000	26980	5296	25557	169332;169333;169334;169335;169336;169337;169338	229192;229193;229194;229195;229196;229197;229198;229199	229198			7	
KAEPMQWASLELPAAK	2	Oxidation (M)	1784.9131	0.91310583	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	60.428	60.291	3	2.2729E-05	51846	160511_QHF_FH_JSI12i_3	90.348	75.389			0.63352	0.62154	50.989	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45603	0.4334	NaN	1	1	Median	0.8801	0.89136	NaN	1	0	Median	76305000	43412000	32893000	0	0	0	0	0	0	25018000	16394000	8624000	51286000	27017000	24269000	26981	5296	25557	169339;169340	229200;229201;229202	229201		2624	3	
KAEPSEVDMNSPK	2	Unmodified	1430.6711	0.67114423	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.653	5	8	2							3	1	4	7	17.232	16.614	2;3	2.8149E-10	13342	160511_QHF_FH_JSI11i_2	115.57	88.825			0.78154	0.80705	26.734	5	5	Median	1.1082	0.9291	19.916	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76501	0.76686	NaN	1	1	Median	0.6286	0.65912	35.782	2	2	Median	356460000	176280000	180190000	114350000	51343000	63004000	0	0	0	130230000	64493000	65737000	111890000	60439000	51446000	26982	4940	25558	169341;169342;169343;169344;169345;169346;169347;169348;169349;169350;169351;169352;169353;169354;169355	229203;229204;229205;229206;229207;229208;229209;229210;229211;229212;229213;229214;229215;229216;229217;229218	229214			16	
KAESFAQEMFIEQNK	2	Unmodified	1798.856	0.85598488	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	3	1	55.449	54.887	2;3	4.0096E-06	48494	160511_QHF_FH_JSI11i_3	124.86	101.48			1.3724	1.5648	47.013	5	3	Median	2.5528	2.2211	NaN	1	1	Median	1.3724	1.5648	NaN	1	0	Median	0.96459	0.91786	25.543	2	1	Median	2.3171	2.3016	NaN	1	1	Median	351490000	140240000	211250000	58001000	12747000	45254000	14189000	5570500	8618100	202820000	98969000	103850000	76484000	22958000	53526000	26983	8	25559	169356;169357;169358;169359;169360;169361	229219;229220;229221;229222;229223;229224	229221			6	
KAESTESIGSSEK	2	Unmodified	1351.6467	0.64670362	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	7.5798	7.403	2;3	0.0007401	4917	160511_QHF_FH_JSI12i_3	63.727	51.1			0.71298	0.79135	63.971	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0041	1.244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50628	0.50341	NaN	1	1	Median	48368000	30235000	18133000	0	0	0	21667000	10498000	11169000	0	0	0	26701000	19737000	6964100	26984	4565	25560	169362;169363;169364	229225;229226;229227	229226			3	
KAETEQHIK	2	Unmodified	1082.572	0.57202253	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	4.559	4.6515	2;3	0.00035288	2133	160511_QHF_FH_JSI12i_3	91.867	66.13			0.89917	0.91155	3.5679	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89917	0.91155	3.5679	2	0	Median	325840000	130930000	194920000	0	0	0	0	0	0	0	0	0	325840000	130930000	194920000	26985	4191	25561	169365;169366;169367	229228;229229;229230	229229			3	
KAEVTLDGVWPTDK	2	Unmodified	1557.8039	0.80387296	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	59.273	59.138	2	0.0053897	50831	160511_QHF_FH_JSI12i_3	67.456	52.484			1.2815	1.2637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2815	1.2637	NaN	1	1	Median	32909000	8363900	24545000	0	0	0	0	0	0	5810000	0	5810000	27099000	8363900	18735000	26986	1790	25562	169368;169369	229231;229232	229232			2	
KAEVVQVIR	1	Unmodified	1040.6342	0.63422886	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	23.192	22.815	2;3	0.00071034	18980	160511_QHF_FH_JSI10i_3	53.751	31.723			0.702	0.75759	15.941	7	0	Median	0.90387	0.75759	NaN	1	0	Median	0.66699	0.78007	NaN	1	0	Median	0.87874	0.82579	26.191	3	0	Median	0.6783	0.681	0.9723	2	0	Median	381090000	217010000	164080000	26618000	14801000	11817000	43440000	26339000	17101000	228500000	116880000	111620000	82533000	58989000	23545000	26987	4744	25563	169370;169371;169372;169373;169374;169375;169376	229233;229234;229235;229236	229235			3	
KAFANPEDALR	1	Acetyl (K)	1272.6463	0.64625011	189	O14684	PTGES	Prostaglandin E synthase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		63.033	51.972	2	0.0068891	29391	160513_QHF_FH_JSI11Kac_4	71.03	51.759			0.1508	0.14871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1508	0.14871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2967900	2356800	611080	0	0	0	0	0	0	2967900	2356800	611080	0	0	0	26988	189	25564	169377	229237	229237	98		1	
KAGEIWK	2	Unmodified	830.46504	0.46503826	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	14.636	14.375	3	0.024211	10981	160511_QHF_FH_JSI12i_3	30.612	7.0886			2.0507	2.3721	92.314	3	1	Median	NaN	NaN	NaN	0	0	Median	2.0507	2.3721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6033	1.6072	126.62	2	1	Median	329230000	149400000	179820000	0	0	0	61496000	27055000	34441000	0	0	0	267730000	122350000	145380000	26989	2277	25565	169378;169379;169380	229238;229239	229238			2	
KAGGANYDAQTE	1	Unmodified	1223.5418	0.54184461	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.1	5	2				1	1			3	2	3	1	8.7652	6.6038	2	5.1418E-10	5441	160511_QHF_FH_JSI9i_1	127.3	96.227			0.99215	1.0225	35.834	8	1	Median	1.0841	0.90818	24.279	2	1	Median	0.81475	0.96972	9.0449	2	0	Median	1.2536	1.2118	43.36	3	0	Median	0.68881	0.72644	NaN	1	0	Median	954380000	504400000	449980000	204160000	93861000	110300000	244740000	135600000	109140000	285850000	141800000	144050000	219620000	133140000	86488000	26990	2487	25566	169381;169382;169383;169384;169385;169386;169387;169388;169389	229240;229241;229242;229243;229244;229245;229246;229247;229248;229249;229250	229249			11	
KAGNFYVPAEPK	2	Unmodified	1319.6874	0.68738664	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.13	33.687	3	0.0009753	27548	160511_QHF_FH_JSI9i_3	55.04	44.43			0.82055	0.66933	NaN	1	0	Median	0.82055	0.66933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87406000	44870000	42536000	87406000	44870000	42536000	0	0	0	0	0	0	0	0	0	26991	1138	25567	169390	229251	229251			1	
KAHLGTALK	2	Acetyl (K)	979.58147	0.581465	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		26.246	17.134	3	0.001464	10407	160513_QHF_FH_JSI11Kac_6	75.509	43.557			0.0081407	0.0078602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0081407	0.0078602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22371000	22229000	142220	0	0	0	0	0	0	22371000	22229000	142220	0	0	0	26992	1992	25568	169391	229252	229252	2013;2016		1	
KAHLMEIQVNGGTVAEK	2	Acetyl (K)	1865.9669	0.96693232	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.36	51.652	3	0.00033687	27986	160513_QHF_FH_JSI11Kac_6	91.475	81.31			0.45847	0.44531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45847	0.44531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23213000	15841000	7371500	0	0	0	0	0	0	23213000	15841000	7371500	0	0	0	26993	1484	25569	169392	229253	229253	1494		1	
KAHLMEIQVNGGTVAEK	2	Acetyl (K);Oxidation (M)	1881.9618	0.96184694	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	1	1			By MS/MS		15.5	0.5								1	1			2		51.031	40.843	3	0.006776	22113	160513_QHF_FH_JSI11Kac_6	55.437	43.236			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4643100	4643100	0	0	0	0	0	0	0	4643100	4643100	0	0	0	0	26994	1484	25569	169393;169394	229254;229255	229254	1494	1163	2	
KAHLTNQYMQR	1	Acetyl (K)	1430.7089	0.70886714	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.182	21.943	3	0.0028345	12540	160513_QHF_FH_JSI11Kac_6	61.958	44.791			0.64073	0.64372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64073	0.64372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4516300	3689900	826410	0	0	0	0	0	0	4516300	3689900	826410	0	0	0	26995	2385	25570	169395	229256	229256	2457		1	
KANPDLPILIR	1	Unmodified	1248.7554	0.75540662	356	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			58.183	56.648	3	0.021003	47489	160511_QHF_FH_JSI10i_3	28.764	23.878			0.97267	1.1275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97267	1.1275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13152000	6546100	6606200	0	0	0	13152000	6546100	6606200	0	0	0	0	0	0	26996	356	25571	169396	229257	229257			1	
KAPAGQEEPGTPPSSPLSAEQLDR	1	Unmodified	2461.2085	0.20849581	1025	P13051	UNG	Uracil-DNA glycosylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.8	0.748	2	2	1							1	2	2		47.203	46.632	3	2.6512E-10	41102	160511_QHF_FH_JSI11i_3	85.062	81.11			0.93719	0.94102	7.2284	5	1	Median	1.1474	0.96875	NaN	1	0	Median	0.72649	0.87181	10.803	2	0	Median	0.97093	0.91539	3.9963	2	1	Median	NaN	NaN	NaN	0	0	Median	204050000	107600000	96455000	39755000	16417000	23337000	83123000	46841000	36282000	81174000	44339000	36835000	0	0	0	26997	1025	25572	169397;169398;169399;169400;169401	229258;229259;229260;229261;229262;229263;229264;229265;229266;229267;229268;229269;229270	229258			13	
KAPAQKVPAQK	3	Unmodified	1164.6979	0.69789175	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.8937	5.3707	3	0.008794	3389	160511_QHF_FH_JSI9i_3	55.353	41.761			0.30469	0.25376	NaN	1	1	Median	0.30469	0.25376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73757000	57839000	15918000	73757000	57839000	15918000	0	0	0	0	0	0	0	0	0	26998	1720	25573	169402	229271	229271			1	
KAPDFVFYAPR	1	Unmodified	1309.6819	0.68190733	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.61		8	6					2	8	6	6	6	6	62.31	57.94	2;3	8.0437E-13	47525	160511_QHF_FH_JSI9i_3	141.95	104.76			0.9186	0.92413	16.072	24	1	Median	1.1495	0.95187	15.874	6	0	Median	0.78652	0.92413	21.838	6	0	Median	0.96083	0.93839	13.481	6	1	Median	0.7924	0.84963	8.8956	6	0	Median	16693000000	8120800000	8572400000	2679700000	1203500000	1476200000	3076000000	1599500000	1476500000	7311700000	3352300000	3959400000	3625800000	1965500000	1660200000	26999	1073;1426;1270	25574	169403;169404;169405;169406;169407;169408;169409;169410;169411;169412;169413;169414;169415;169416;169417;169418;169419;169420;169421;169422;169423;169424;169425;169426	229272;229273;229274;229275;229276;229277;229278;229279;229280;229281;229282;229283;229284;229285;229286;229287;229288;229289;229290;229291;229292;229293;229294;229295;229296;229297;229298;229299;229300;229301;229302;229303;229304;229305;229306;229307;229308;229309;229310;229311;229312;229313;229314;229315;229316;229317;229318;229319;229320;229321;229322;229323;229324;229325;229326	229290			55	
KAPGVANK	2	Unmodified	783.46029	0.46028724	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.0475	4.8265	2	0.0029163	2640	160511_QHF_FH_JSI10i_3	76.847	41.741			1.0373	0.97556	17.503	4	0	Median	1.2859	1.0526	NaN	1	0	Median	0.65612	0.76593	NaN	1	0	Median	1.2043	1.1381	NaN	1	0	Median	0.89341	0.90415	NaN	1	0	Median	1058200000	511260000	546890000	287590000	124290000	163300000	230750000	129530000	101220000	211140000	86190000	124950000	328680000	171250000	157430000	27000	2080	25575	169427;169428;169429;169430	229327;229328;229329;229330;229331;229332;229333	229329			7	
KAPGVANKK	3	Unmodified	911.55525	0.55525025	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		4.5447	4.5447	3	0.0007914	2187	160511_QHF_FH_JSI11i_3	76.827	52.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27001	2080	25576	169431	229334	229334			1	
KAPIFTSEQGEK	2	Unmodified	1333.6878	0.68778057	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	21.045	20.429	2;3	2.6598E-05	16425	160511_QHF_FH_JSI9i_3	70.563	67.367			0.89029	0.84879	13.911	8	0	Median	1.0043	0.8228	3.5831	2	0	Median	0.75791	0.85842	5.165	2	0	Median	0.96024	0.89247	6.2832	2	0	Median	0.69877	0.72401	27.938	2	0	Median	489560000	267160000	222400000	118610000	58768000	59842000	154710000	91941000	62773000	152900000	77156000	75746000	63337000	39300000	24037000	27002	1095	25577	169432;169433;169434;169435;169436;169437;169438;169439	229335;229336;229337;229338;229339;229340	229339			5	
KAPIQTYVLGANNQETVK	2	Unmodified	1973.0582	0.058190166	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.078	47.223	3	2.6759E-08	38675	160511_QHF_FH_JSI9i_3	112.16	108.41			1.0236	0.81741	15.744	3	0	Median	1.0236	0.81741	NaN	1	0	Median	0.67818	0.77114	NaN	1	0	Median	1.125	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	431400000	229980000	201420000	149200000	73429000	75768000	128560000	82601000	45959000	136050000	56358000	79689000	17592000	17592000	0	27003	3032	25578	169440;169441;169442;169443	229341;229342;229343;229344;229345;229346;229347;229348;229349;229350;229351	229348			11	
KAPKEDVDAAVK	3	Unmodified	1269.6929	0.69286595	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			13.037	12.275	3	0.013526	9641	160511_QHF_FH_JSI10i_3	47.189	35.976			0.89748	1.0443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89748	1.0443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38108000	22158000	15950000	0	0	0	38108000	22158000	15950000	0	0	0	0	0	0	27004	878	25579	169444	229352	229352			1	
KAPLNIPGTPVLEDFPQNDDEK	2	Unmodified	2436.2173	0.21726958	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		80.109	79.209	3	8.4815E-07	66312	160511_QHF_FH_JSI10i_3	72.443	64.256			0.7629	0.79666	0.99148	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67377	0.80226	NaN	1	0	Median	0.86381	0.79109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95467000	53383000	42084000	0	0	0	25562000	18805000	6756400	69906000	34578000	35328000	0	0	0	27005	2594	25580	169445;169446;169447	229353;229354;229355;229356;229357;229358	229356			6	
KAPPAPAK	2	Unmodified	778.47012	0.47012364	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	5.5761	5.3056	2	0.0064999	3112	160511_QHF_FH_JSI12i_3	62.717	46.573			0.97726	0.98673	1.5409	5	0	Median	1.2269	1.0103	NaN	1	0	Median	0.83883	0.9743	0.52635	2	0	Median	1.0101	0.98673	NaN	1	0	Median	0.97726	0.99371	NaN	1	0	Median	2416300000	1137200000	1279100000	330320000	143720000	186590000	435220000	231690000	203530000	550030000	255180000	294850000	1100800000	506630000	594150000	27006	3947	25581	169448;169449;169450;169451;169452	229359;229360;229361;229362;229363;229364;229365	229365			7	
KAPPDGWELIEPTLDELDQK	2	Unmodified	2293.1478	0.14779303	1513	P41223	BUD31	Protein BUD31 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.995	98.014	3	2.921E-05	84774	160511_QHF_FH_JSI12i_3	82.36	60.349			1.0805	1.0926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0805	1.0926	NaN	1	1	Median	29136000	9050200	20085000	0	0	0	0	0	0	0	0	0	29136000	9050200	20085000	27007	1513	25582	169453	229366	229366			1	
KAPPLVENEEAEPGR	1	Unmodified	1634.8264	0.82639932	217	O14908	GIPC1	PDZ domain-containing protein GIPC1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			28.711	27.385	3	0.0097765	22600	160511_QHF_FH_JSI10i_3	41.542	37.638			0.88618	1.0106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88618	1.0106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11650000	7295300	4355000	0	0	0	11650000	7295300	4355000	0	0	0	0	0	0	27008	217	25583	169454;169455	229367;229368	229368			2	
KAPPPPPTSMPK	2	Unmodified	1246.6744	0.67437911	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.418	22.408	2	0.023124	18445	160511_QHF_FH_JSI12i_3	41.54	29.304			1.0003	1.014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0003	1.014	NaN	1	0	Median	34531000	15920000	18611000	0	0	0	0	0	0	0	0	0	34531000	15920000	18611000	27009	235	25584	169456	229369	229369			1	
KAPQHTAVGFK	2	Unmodified	1182.6509	0.65094155	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	10.998	10.647	3	0.0025516	8590	160511_QHF_FH_JSI9i_3	55.452	46.02			1.2151	1.0873	14.326	2	2	Median	1.2271	0.98252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2032	1.2032	NaN	1	1	Median	301950000	139020000	162930000	150850000	64414000	86435000	0	0	0	0	0	0	151110000	74608000	76497000	27010	313	25585	169457;169458	229370;229371	229370			2	
KAPSEASAQEQR	1	Unmodified	1300.6371	0.63714198	4849	Q9HC36	RNMTL1	rRNA methyltransferase 3, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		5.7257	5.4776	2	0.0021057	3414	160511_QHF_FH_JSI11i_3	57.785	42.525			0.76212	0.79731	19.389	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59056	0.69516	NaN	1	0	Median	0.98352	0.91447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65952000	35671000	30281000	0	0	0	16596000	10229000	6367100	49356000	25442000	23914000	0	0	0	27011	4849	25586	169459;169460;169461	229372;229373	229372			2	
KAPTMPK	2	Unmodified	771.4313	0.43129529	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	8.9909	8.8274	2	0.026637	6220	160511_QHF_FH_JSI12i_3	54.205	36.438			0.88254	0.88619	9.5538	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.61954	0.73715	NaN	1	0	Median	0.90824	0.84474	NaN	1	0	Median	0.88254	0.88619	NaN	1	0	Median	431150000	212740000	218410000	0	0	0	77793000	38989000	38804000	140910000	69481000	71434000	212440000	104270000	108170000	27012	350	25587	169462;169463;169464	229374	229374			1	
KAPTTDEDK	2	Unmodified	1003.4822	0.48220447	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1				By MS/MS	1	0	1												1	4.811	4.4693	2	0.0052977	2413	160511_QHF_FH_JSI12i_1	72.643	29.397			1.3905	1.4118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3905	1.4118	NaN	1	1	Median	132320000	51152000	81166000	0	0	0	0	0	0	0	0	0	132320000	51152000	81166000	27013	40	25588	169465	229375	229375			1	
KAPTTDEDKK	3	Unmodified	1131.5772	0.57716749	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.45	4.46		7	10					3		3	6	6	5	4.6649	3.0349	2;3;4	1.4059E-09	2153	160511_QHF_FH_JSI10i_3	121.02	89.178			0.96865	1.0192	28.841	20	0	Median	1.8231	1.551	22.257	3	0	Plateau	0.89072	1.0631	19.004	6	0	Median	1.0145	1.0128	44.146	6	0	Median	0.89116	0.90614	16.852	5	0	Median	12068000000	5576000000	6491500000	1143400000	412230000	731130000	3228500000	1622900000	1605600000	5314100000	2093600000	3220500000	2381600000	1447300000	934300000	27014	40	25589	169466;169467;169468;169469;169470;169471;169472;169473;169474;169475;169476;169477;169478;169479;169480;169481;169482;169483;169484;169485	229376;229377;229378;229379;229380;229381;229382;229383;229384;229385;229386;229387;229388;229389;229390;229391;229392;229393;229394;229395;229396;229397	229381			21	
KAPVHVK	2	Unmodified	777.48611	0.48610806	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	5.216	4.9902	2	0.016944	2575	160511_QHF_FH_JSI12i_3	62.714	37.716			1.1629	1.0367	40.422	4	0	Median	1.2688	1.0022	NaN	1	0	Median	0.60404	0.70243	NaN	1	0	Median	1.9163	1.8673	NaN	1	0	Median	1.0658	1.0723	NaN	1	0	Median	2181500000	923090000	1258400000	531140000	222450000	308680000	333440000	192980000	140450000	519330000	129100000	390230000	797550000	378550000	419000000	27015	878	25590	169486;169487;169488;169489	229398;229399;229400;229401;229402	229402			5	
KAPVILEK	2	Unmodified	896.5695	0.56950333	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	21.938	21.528	2	0.0047467	18120	160511_QHF_FH_JSI11i_3	67.993	24.746			0.74647	0.73113	84.619	3	1	Plateau	NaN	NaN	NaN	0	0	Median	3.2152	3.8236	NaN	1	1	Median	1.398	1.3452	NaN	1	0	Median	0.69568	0.7159	NaN	1	0	Median	537080000	237540000	299550000	0	0	0	93142000	24319000	68823000	169790000	59138000	110660000	274150000	154080000	120070000	27016	3306	25591	169490;169491;169492	229403;229404;229405	229403			3	
KAPVLFNK	2	Unmodified	915.55419	0.55418762	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		26.955	25.944	2;3	0.012443	21236	160511_QHF_FH_JSI9i_3	30.348	11.253			0.71343	0.69216	39.565	4	0	Median	0.58078	0.47439	11.368	2	0	Median	0.79976	0.93188	NaN	1	0	Median	1.0096	0.93303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	281680000	154220000	127460000	130330000	76971000	53362000	97894000	50952000	46942000	53452000	26299000	27153000	0	0	0	27017	2405	25592	169493;169494;169495;169496	229406;229407;229408;229409	229409			4	
KAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVK	2	Unmodified	4505.39	0.38997642	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.797	90.077	4	7.9882E-74	52014	160513_QHF_FH_JSI10Kac_6	165.96	158.34			0.82491	0.97754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82491	0.97754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127890000	86453000	41437000	0	0	0	127890000	86453000	41437000	0	0	0	0	0	0	27018	5360	25593	169497	229410	229410			1	
KAQDEGLLSDVVPFK	2	Unmodified	1644.8723	0.87228688	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.58	75.295	3	6.1894E-05	65314	160511_QHF_FH_JSI12i_3	68.919	58.065			3.1533	3.1473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1533	3.1473	NaN	1	0	Median	124870000	27883000	96987000	0	0	0	0	0	0	0	0	0	124870000	27883000	96987000	27019	1848	25594	169498	229411	229411			1	
KAQDVLVQEMEVVK	2	Unmodified	1614.8651	0.86509301	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	59.302	59.04	2	0.0032026	50854	160511_QHF_FH_JSI12i_3	56.122	40.493			1.4359	1.5187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4359	1.5187	NaN	1	0	Median	21370000	6947000	14423000	0	0	0	0	0	0	0	0	0	21370000	6947000	14423000	27020	4271	25595	169499	229412	229412			1	
KAQIEEEK	2	Unmodified	973.50803	0.50802529	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.5642	5.5642	2	0.019269	3330	160511_QHF_FH_JSI11i_3	47.198	2.0368			1.1026	0.99428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1026	0.99428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34553000	19522000	15031000	0	0	0	0	0	0	34553000	19522000	15031000	0	0	0	27021	4518	25596	169500	229413	229413			1	
KAQQELEEQTR	1	Unmodified	1358.679	0.6790068	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.7674	7.7674	2	1.9851E-05	5463	160511_QHF_FH_JSI11i_3	103.34	84.071			1.0625	0.99301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0625	0.99301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50429000	24020000	26409000	0	0	0	0	0	0	50429000	24020000	26409000	0	0	0	27022	1270	25597	169501	229414;229415	229415			2	
KAQQELEEQTRR	1	Unmodified	1514.7801	0.78011783	1270	P26038	MSN	Moesin	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				7.7761	7.2233	3	9.0752E-05	5046	160511_QHF_FH_JSI9i_3	89.231	69.553			1.2095	0.95517	NaN	1	0	Median	1.2095	0.95517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166910000	70095000	96812000	166910000	70095000	96812000	0	0	0	0	0	0	0	0	0	27023	1270	25598	169502	229416;229417	229416			2	
KASAEGPLLGPEAAPSGEGAGSK	2	Unmodified	2080.0437	0.043662314	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		36.45	36.45	3	7.6009E-07	31899	160511_QHF_FH_JSI11i_3	71.428	64.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27024	4372	25600	169503	229418	229418			1	
KASGPPVSELITK	2	Unmodified	1325.7555	0.7554662	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	1	By MS/MS		By matching	By MS/MS	3	0			4							2		1	1	40.688	40.111	3	0.00029021	32791	160511_QHF_FH_JSI9i_3	74.789	59.402			1.3445	1.3546	50.131	3	1	Plateau	0.61929	0.50393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.016	0.95392	NaN	1	0	Median	1.3445	1.3546	NaN	1	0	Median	250760000	128920000	121840000	110050000	67193000	42859000	0	0	0	45724000	22907000	22817000	94986000	38820000	56166000	27025	969;1099;1098	25601	169504;169505;169506;169507	229419;229420;229421	229419			3	
KASSEGGTAAGAGLDSLHK	2	Unmodified	1755.8751	0.87514042	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		22.38	21.559	3	1.2696E-05	17680	160511_QHF_FH_JSI10i_3	90.718	78.95			1.1145	1.0081	75.121	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.1704	105.54	2	2	Median	1.1145	1.0081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62060000	27501000	34559000	0	0	0	28647000	14239000	14408000	33413000	13261000	20151000	0	0	0	27026	255	25602	169508;169509;169510	229422;229423;229424	229423			2	
KATDAEADVASLNR	1	Unmodified	1459.7267	0.72668527	73;886;929	CON__Q3SX28;P07951;P09493	TPM2;TPM1	Tropomyosin beta chain;Tropomyosin alpha-1 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	26.34	25.8	2;3	5.5157E-05	22001	160511_QHF_FH_JSI11i_3	87.083	76.137		+	1.0033	0.99465	23.126	11	1	Median	1.0268	0.88766	2.1298	2	1	Median	0.78493	0.96399	18.637	2	0	Median	1.1663	1.1188	30.649	4	0	Median	1.3019	1.3071	18.309	3	0	Median	593940000	292820000	301120000	130930000	62860000	68072000	92180000	56401000	35779000	225240000	108470000	116780000	145580000	65090000	80494000	27027	73;886;929	25603	169511;169512;169513;169514;169515;169516;169517;169518;169519;169520;169521	229425;229426;229427;229428;229429;229430;229431;229432;229433;229434;229435;229436;229437;229438;229439	229425			15	
KATDAEADVASLNRR	1	Unmodified	1615.8278	0.8277963	73;886;929	CON__Q3SX28;P07951;P09493	TPM2;TPM1	Tropomyosin beta chain;Tropomyosin alpha-1 chain	no	no	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			23.935	22.647	3	0.0014462	18161	160511_QHF_FH_JSI9i_3	82.663	75.977		+	0.95468	0.92939	3.7039	2	0	Median	1.1345	0.90536	NaN	1	0	Median	0.80335	0.95405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	524850000	247010000	277850000	431200000	194660000	236540000	93655000	52350000	41305000	0	0	0	0	0	0	27028	73;886;929	25604	169522;169523	229440	229440			1	
KATGAATPK	2	Unmodified	843.48142	0.48141661	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.82	0.386		2	9							3	5	3		1.6484	1.3363	2;3	0.00017423	810	160511_QHF_FH_JSI9i_3	87.476	56.187			1.2921	1.095	104.64	11	6	Median	1.2921	1.0258	74.543	3	1	Plateau	0.43797	0.53394	129.53	5	4	Median	0.42963	0.40984	88.151	3	1	Plateau	NaN	NaN	NaN	0	0	Median	2802000000	1272700000	1529300000	897290000	309620000	587670000	782820000	434840000	347980000	1121900000	528210000	593660000	0	0	0	27029	969	25605	169524;169525;169526;169527;169528;169529;169530;169531;169532;169533;169534	229441;229442;229443;229444;229445;229446;229447;229448;229449;229450;229451;229452;229453;229454;229455;229456;229457;229458;229459;229460;229461;229462	229457			22	
KATGAATPKK	3	Unmodified	971.57638	0.57637963	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				1.4646	1.0129	3	0.0038337	592	160511_QHF_FH_JSI9i_3	63.864	42.993			0.11601	0.095756	NaN	1	1	Median	0.11601	0.095756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69009000	59563000	9445300	69009000	59563000	9445300	0	0	0	0	0	0	0	0	0	27030	969	25606	169535	229463	229463			1	
KATVNLLGEEK	2	Unmodified	1200.6714	0.67140222	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	2	1	2	29.99	29.158	2;3	9.5856E-05	24358	160511_QHF_FH_JSI10i_3	62.924	47.384			1.0109	0.96015	16.163	8	3	Median	1.2088	0.9909	20.754	3	1	Median	0.72844	0.83551	7.3191	2	0	Median	1.2223	1.1705	NaN	1	0	Median	1.0014	0.98724	8.3938	2	2	Median	897510000	449570000	447940000	73769000	36772000	36997000	205850000	110480000	95367000	179740000	85885000	93852000	438150000	216430000	221720000	27031	2159	25607	169536;169537;169538;169539;169540;169541;169542;169543	229464;229465;229466;229467;229468;229469;229470;229471;229472;229473;229474;229475	229468			12	
KAVAFSPVTELK	2	Unmodified	1288.7391	0.73908786	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	47.923	47.682	3	0.027223	40799	160511_QHF_FH_JSI12i_3	33.685	27.026			0.71509	0.71961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71509	0.71961	NaN	1	1	Median	28395000	20869000	7525700	0	0	0	0	0	0	0	0	0	28395000	20869000	7525700	27032	1129	25608	169544	229476	229476			1	
KAVAISLPK	2	Unmodified	925.59605	0.59605244	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			35.618	34.178	3	0.003351	28503	160511_QHF_FH_JSI10i_3	54.416	21.576			0.35345	0.41008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35345	0.41008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13036000	7870700	5165600	0	0	0	13036000	7870700	5165600	0	0	0	0	0	0	27033	1706	25609	169545	229477	229477			1	
KAVAISLPK	2	Acetyl (K)	967.60662	0.60661712	1706	P50454	SERPINH1	Serpin H1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			64.898	54.193	2	0.05342	29506	160513_QHF_FH_JSI10Kac_4	54.416	31.676			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2163200	0	2163200	0	0	0	2163200	0	2163200	0	0	0	0	0	0	27034	1706	25609	169546	229478	229478			1	
KAVHHFVNK	2	Unmodified	1078.6036	0.60359743	4635	Q9H0K6	PUS7L	Pseudouridylate synthase 7 homolog-like protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				22.822	21.524	3	0.023744	17355	160511_QHF_FH_JSI9i_3	30.254	12.446			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27035	4635	25610	169547	229479	229479			1	
KAVLFCLSEDK	2	Unmodified	1308.6748	0.67477304	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			50.242	48.674	3	0.015669	40708	160511_QHF_FH_JSI10i_3	26.969	17.482			0.94908	1.0583	62.847	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94908	1.0583	62.847	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42172000	21457000	20715000	0	0	0	42172000	21457000	20715000	0	0	0	0	0	0	27036	1236	25611	169548;169549	229480;229481	229480			2	
KAVTKAQK	3	2 Acetyl (K)	956.56548	0.56548059	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	2	0	0	2				By MS/MS	13	0						1							1	16.879	9.8765	2	0.04244	7129	160513_QHF_FH_JSI12Kac_3	78.264	26.409			0.66032	0.72407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66032	0.72407	NaN	1	0	Median	33315000	19344000	13970000	0	0	0	0	0	0	0	0	0	33315000	19344000	13970000	27037	1235;1902	25612	169550	229482	229482	1114;1115;1118		1	
KAVTKAQKK	4	2 Acetyl (K)	1084.6604	0.66044361	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	2	0	0	3		By MS/MS		By MS/MS	14.7	0.471							1	2			2		1	12.048	2.5164	3	0.053798	4169	160513_QHF_FH_JSI10Kac_5	39.918	14.781			2.8041	3.2925	77.686	3	0	Plateau	NaN	NaN	NaN	0	0	Median	2.5136	2.9746	14.363	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69349	0.78355	NaN	1	0	Median	23004000	7474900	15530000	0	0	0	18437000	4692200	13745000	0	0	0	4567800	2782700	1785100	27038	1235;1902	25613	169551;169552;169553	229483	229483	1114;1115;1118		1	
KAVTKVQK	3	2 Acetyl (K)	984.59678	0.59678072	2915	Q5QNW6	HIST2H2BF	Histone H2B type 2-F	yes	yes	2	0	0	2		By MS/MS	By MS/MS		13	0						2					1	1		25.306	17.742	2	0.052723	10492	160513_QHF_FH_JSI10Kac_3	75.378	25.96			1.5649	1.6958	80.88	2	0	Median	NaN	NaN	NaN	0	0	Median	2.5288	3.0044	NaN	1	0	Median	0.96841	0.95721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19294000	7465200	11829000	0	0	0	14110000	4285900	9823600	5184900	3179300	2005600	0	0	0	27039	2915	25614	169554;169555	229484	229484	2713;2714		1	
KAVVDSDKK	3	Unmodified	988.55531	0.55530983	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				4.6378	4.1384	3	0.011479	2117	160511_QHF_FH_JSI9i_3	53.756	0			2.439	1.9171	NaN	1	0	Median	2.439	1.9171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1248400000	364950000	883430000	1248400000	364950000	883430000	0	0	0	0	0	0	0	0	0	27040	3216	25615	169556	229485	229485			1	
KAYGQALAK	2	Acetyl (K)	990.54983	0.54983053	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	31.149	22.686	2	0.0058046	13831	160513_QHF_FH_JSI11Kac_3	90.657	63.132			0.9481	1.1272	42.966	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9481	1.1272	NaN	1	0	Median	0.50792	0.49108	NaN	1	0	Median	0.85265	0.89954	NaN	1	0	Median	36272000	21618000	14653000	0	0	0	14691000	7607000	7084200	10363000	7260900	3102300	11217000	6750400	4466900	27041	1322	25616	169557;169558;169559	229486;229487	229486	1246;1249		2	
KCDISLQFFLPFSLGK	2	Unmodified	1898.9964	0.99644153	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	95.677	86.996	2;3	4.8938E-23	48973	160513_QHF_FH_JSI11Kac_6	157.68	137.56			0.36443	0.41039	24.674	5	3	Median	NaN	NaN	NaN	0	0	Median	0.36443	0.4239	NaN	1	1	Median	0.30039	0.2846	9.3101	2	1	Median	0.41899	0.44395	11.116	2	1	Median	1057800000	775700000	282130000	0	0	0	176560000	133070000	43484000	453680000	349400000	104290000	427590000	293230000	134360000	27042	1024	25617	169560;169561;169562;169563;169564	229488;229489;229490;229491;229492;229493	229488			6	
KCIAAKKIK	4	3 Acetyl (K)	1184.6951	0.69511455	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	3	0	0	3		By MS/MS		By MS/MS	13.7	0.471						1	2				2		1	49.878	39.855	2	0.0044065	22202	160513_QHF_FH_JSI10Kac_4	74.173	57.84			0.95942	1.1192	33.075	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8969	1.0522	8.727	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7041	1.8473	NaN	1	0	Median	10063000	4089600	5973000	0	0	0	5860400	2466900	3393600	0	0	0	4202100	1622700	2579400	27043	2175	25618	169565;169566;169567	229494;229495;229496;229497	229495	2292;2293;2294		4	
KCYEMASHLR	1	Acetyl (K)	1335.6064	0.6063759	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	1	0	0	1		By matching	By MS/MS	By matching	16	0									3		1	1	1	36.472	27.451	3	0.00085344	15249	160513_QHF_FH_JSI11Kac_6	93.345	76.813			0.32316	0.34926	95.47	3	0	Median	NaN	NaN	NaN	0	0	Median	1.151	1.3162	NaN	1	0	Median	0.22484	0.20642	NaN	1	0	Median	0.32316	0.34926	NaN	1	0	Median	74582000	54503000	20079000	0	0	0	12516000	5493200	7022500	58319000	46223000	12096000	3746700	2786300	960450	27044	876	25619	169568;169569;169570	229498	229498	584		1	
KDDAITAYK	2	Unmodified	1023.5237	0.52367535	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.588	14.365	2	0.024215	11402	160511_QHF_FH_JSI11i_2	56.729	30.993			0.54965	0.53904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54965	0.53904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13270000	10544000	2725900	0	0	0	0	0	0	13270000	10544000	2725900	0	0	0	27045	4538	25620	169571	229499	229499			1	
KDDAITAYKK	3	Unmodified	1151.6186	0.61863837	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	10.627	10.722	3	0.0015644	8014	160511_QHF_FH_JSI12i_3	74.611	55.831			0.44873	0.44862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44873	0.44862	NaN	1	1	Median	92463000	53310000	39153000	0	0	0	0	0	0	0	0	0	92463000	53310000	39153000	27046	4538	25621	169572	229500	229500			1	
KDDEENYLDLFSHK	2	Unmodified	1751.8002	0.80024414	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	2	3	63.366	62.655	2;3	3.7643E-10	53629	160511_QHF_FH_JSI12i_3	113.65	90.731			0.95308	0.96187	21.119	8	2	Median	0.95569	0.81083	35.516	2	1	Median	0.89128	1.0783	30.994	2	0	Median	0.99639	0.96187	4.4695	2	0	Median	0.8955	0.95	7.4927	2	1	Median	1343300000	688730000	654590000	148710000	76261000	72445000	240810000	133160000	107650000	421410000	214400000	207010000	532380000	264900000	267480000	27047	2255	25622	169573;169574;169575;169576;169577;169578;169579;169580;169581	229501;229502;229503;229504;229505;229506;229507;229508;229509;229510;229511;229512;229513	229513			13	
KDDENIPMETEETHLEETTESQQNGEEGTSTPEDK	2	Unmodified	3976.6764	0.67636794	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	51.182	50.516	4	1.2598E-07	45879	160511_QHF_FH_JSI12i_1	54.375	52.733			0.96125	1.0084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96125	1.0084	NaN	1	1	Median	20781000	14264000	6516600	0	0	0	0	0	0	0	0	0	20781000	14264000	6516600	27048	3936	25623	169582	229514	229514			1	
KDDESNLVEEK	2	Unmodified	1304.6096	0.60958983	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	2									1			1	15.131	14.691	2	0.00010074	12393	160511_QHF_FH_JSI12i_1	87.363	13.201			1.0149	1.0526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.0526	NaN	1	0	Median	46425000	26384000	20041000	0	0	0	0	0	0	0	0	0	46425000	26384000	20041000	27049	2258	25624	169583;169584	229515;229516;229517	229516			3	
KDDEVQVVR	1	Unmodified	1086.5669	0.56693715	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1.78	0.416	2	7								4	1	2	2	13.023	12.385	2;3	0.00053626	9926	160511_QHF_FH_JSI9i_2	73.985	47.312			0.6551	0.71532	30.411	9	4	Median	0.84586	0.72114	42.984	4	2	Median	0.8069	0.98662	NaN	1	0	Median	0.61258	0.61789	7.4462	2	1	Median	0.59268	0.66584	14.475	2	1	Median	1179700000	651730000	527940000	474710000	249270000	225430000	65938000	22975000	42963000	414620000	235990000	178640000	224400000	143490000	80910000	27050	1949;5450	25625	169585;169586;169587;169588;169589;169590;169591;169592;169593	229518;229519;229520;229521;229522;229523;229524	229522			7	
KDDPTLLSSGR	1	Unmodified	1187.6146	0.61461563	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		20.224	19.916	2	0.056779	16288	160511_QHF_FH_JSI11i_2	34.532	22.685			0.92227	0.9175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92227	0.9175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56445000	33129000	23316000	0	0	0	0	0	0	56445000	33129000	23316000	0	0	0	27051	1202	25626	169594	229525	229525			1	
KDDQMLK	2	Unmodified	876.4375	0.43750288	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	7.8934	7.4827	2	0.019112	5256	160511_QHF_FH_JSI12i_2	59.35	29.165			0.63042	0.66399	48.634	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46717	0.47077	NaN	1	1	Median	0.85072	0.93651	NaN	1	0	Median	132130000	75472000	56653000	0	0	0	0	0	0	56988000	34334000	22654000	75137000	41138000	33999000	27052	1766	25627	169595;169596	229526;229527;229528	229527			3	
KDDTDDEIAK	2	Unmodified	1148.5197	0.51971219	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	9.0994	6.6542	2;3	1.8138E-07	5982	160511_QHF_FH_JSI12i_1	118.28	96.192			0.90309	0.95805	7.9219	10	0	Median	1.2111	0.98594	3.4801	2	0	Median	0.79272	0.93964	3.299	3	0	Median	1.0427	1.0191	18.99	2	0	Median	0.89938	0.95415	6.3039	3	0	Median	4412500000	2156900000	2255600000	1081600000	462550000	619070000	1324100000	680190000	643880000	689450000	311760000	377680000	1317400000	702450000	614930000	27053	1299	25628	169597;169598;169599;169600;169601;169602;169603;169604;169605;169606;169607	229529;229530;229531;229532;229533;229534;229535;229536;229537;229538;229539;229540;229541;229542	229531			14	
KDEDLFR	1	Unmodified	921.4556	0.45559579	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	18.892	18.221	2	0.017428	15454	160511_QHF_FH_JSI10i_2	61.962	15.537			1.0237	1.0339	31.678	5	2	Median	0.68541	0.58144	NaN	1	0	Median	0.64103	0.79812	NaN	1	0	Median	1.1347	1.1415	14.01	2	2	Median	1.046	1.1729	NaN	1	0	Median	783310000	431730000	351570000	70900000	38909000	31991000	109110000	73678000	35436000	493810000	260490000	233320000	109480000	58654000	50830000	27054	541	25629	169608;169609;169610;169611;169612	229543;229544;229545;229546;229547	229547			5	
KDEDLFREWLK	2	Unmodified	1477.7565	0.75652884	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			9									5	4	67.869	67.737	3;4	7.7373E-06	58380	160511_QHF_FH_JSI12i_3	100.93	85.544			1.0254	1.0525	31.722	9	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2186	1.1616	20.595	5	1	Median	1.1782	1.2064	33.181	4	2	Linear	992640000	453150000	539490000	0	0	0	0	0	0	559320000	240710000	318600000	433320000	212430000	220890000	27055	541	25630	169613;169614;169615;169616;169617;169618;169619;169620;169621	229548;229549;229550;229551;229552;229553;229554;229555;229556;229557;229558;229559;229560;229561;229562;229563	229557			16	
KDEELDPMDPSSYSDAPR	1	Unmodified	2050.879	0.87896475	451	O60828	PQBP1	Polyglutamine-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	3	2	53.443	52.875	2;3	2.7567E-07	48088	160511_QHF_FH_JSI12i_1	77.969	75.371			1.1091	1.0972	27.396	8	2	Median	1.2541	1.0232	NaN	1	0	Median	1.2781	1.4648	44.867	2	0	Median	1.8758	1.8227	31.616	3	2	Plateau	1.0514	1.0972	1.0314	2	0	Median	904320000	351710000	552600000	101600000	39366000	62237000	230320000	106160000	124160000	331700000	121350000	210350000	240690000	84835000	155860000	27056	451	25631	169622;169623;169624;169625;169626;169627;169628;169629	229564;229565;229566;229567;229568;229569;229570;229571;229572;229573;229574;229575;229576;229577;229578	229573			15	
KDEESGGGSNPFQHLEK	2	Unmodified	1857.8493	0.8493196	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	3	3	2	31.286	30.744	3;4	1.2153E-06	25450	160511_QHF_FH_JSI12i_3	88.565	82.905			0.91809	0.97819	18.416	10	3	Median	1.2613	1.0735	32.776	2	1	Median	0.84799	1.0531	8.6731	3	2	Plateau	0.88449	0.84436	9.8208	3	0	Plateau	0.83273	0.8524	15.591	2	0	Median	1268600000	694520000	574090000	119740000	58824000	60921000	278910000	152050000	126860000	424720000	229330000	195380000	445250000	254320000	190930000	27057	5708	25632	169630;169631;169632;169633;169634;169635;169636;169637;169638;169639	229579;229580;229581;229582;229583;229584;229585;229586;229587;229588;229589;229590;229591;229592	229590			13	
KDEESGSGSNPFQHLEK	2	Unmodified	1887.8599	0.85988429	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.283	30.218	3	0.0001272	25437	160511_QHF_FH_JSI12i_3	75.97	68.74			0.86919	0.87432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86919	0.87432	NaN	1	1	Median	52250000	28391000	23859000	0	0	0	0	0	0	0	0	0	52250000	28391000	23859000	27058	5234	25633	169640	229593	229593			1	
KDEEVLK	2	Unmodified	859.4651	0.46509784	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	1				By MS/MS	2	0		1											1	8.7113	8.087	2	0.042559	5798	160511_QHF_FH_JSI12i_2	58.981	20.189			1.2443	1.3828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2443	1.3828	NaN	1	1	Median	143710000	78843000	64869000	0	0	0	0	0	0	0	0	0	143710000	78843000	64869000	27059	2474;97	25634	169641	229594	229594			1	
KDEEVLKK	3	Unmodified	987.56006	0.56006086	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	4	2	6.8955	6.6717	3	0.00086196	3931	160511_QHF_FH_JSI12i_3	99.815	68.321			0.64916	0.71265	75.993	8	5	Median	1.0997	0.93451	NaN	1	0	Median	0.28481	0.34482	NaN	1	1	Median	1.004	1.0164	101.8	4	4	Median	0.64916	0.71265	26.38	2	0	Median	4272200000	2307500000	1964700000	167130000	72867000	94267000	241010000	171840000	69176000	1372000000	629450000	742580000	2492000000	1433300000	1058700000	27060	2474;97	25635	169642;169643;169644;169645;169646;169647;169648;169649	229595;229596;229597;229598;229599;229600;229601;229602;229603	229603			9	
KDELDSLITAITTNGAHPSK	2	Unmodified	2110.0906	0.090612506	2423	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	83.225	83.034	3	5.5036E-06	71986	160511_QHF_FH_JSI12i_3	77.221	67.938			0.78286	0.76287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78286	0.76287	NaN	1	0	Median	45180000	26602000	18578000	0	0	0	0	0	0	0	0	0	45180000	26602000	18578000	27061	2423	25636	169650	229604	229604			1	
KDENEIEK	2	Unmodified	1003.4822	0.48220447	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	5.7678	5.4152	2	0.0061347	3453	160511_QHF_FH_JSI12i_1	63.816	34.667			0.76404	0.80788	19.644	3	2	Plateau	0.66116	0.54544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67126	0.65985	NaN	1	1	Median	0.77057	0.80788	NaN	1	0	Median	549490000	302860000	246630000	156160000	95633000	60524000	0	0	0	192320000	100600000	91719000	201010000	106620000	94389000	27062	2560	25637	169651;169652;169653	229605;229606;229607	229606			3	
KDENESSAPADGEGGSELQPK	2	Unmodified	2143.9505	0.95054979	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.021	19.515	3	9.6298E-07	16907	160511_QHF_FH_JSI12i_1	78.324	69.382			1.1143	1.0221	17.804	4	1	Median	1.2504	1.0212	NaN	1	1	Median	0.90792	1.0229	NaN	1	0	Median	0.99298	0.96588	NaN	1	0	Median	1.3398	1.4262	NaN	1	0	Median	118800000	52476000	66319000	17843000	6435800	11407000	30460000	12205000	18255000	34247000	20733000	13515000	36245000	13102000	23143000	27063	2682	25638	169654;169655;169656;169657	229608;229609;229610;229611;229612	229610			5	
KDEPDAFK	2	Unmodified	948.45526	0.45526144	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	11.244	10.553	2	0.028558	8063	160511_QHF_FH_JSI12i_2	60.019	34.282			2.8325	3.1896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8325	3.1896	NaN	1	1	Median	50136000	15392000	34744000	0	0	0	0	0	0	0	0	0	50136000	15392000	34744000	27064	1035	25639	169658	229613	229613			1	
KDEQEHEFYK	2	Unmodified	1351.6044	0.60444487	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.738	10.832	3	0.0058464	8171	160511_QHF_FH_JSI12i_3	47.991	35.415			0.99254	1.003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99254	1.003	NaN	1	1	Median	55861000	26382000	29479000	0	0	0	0	0	0	0	0	0	55861000	26382000	29479000	27065	1567	25640	169659	229614	229614			1	
KDGADFAK	2	Unmodified	850.41848	0.418482	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	7.6896	7.3615	2	0.01473	5280	160511_QHF_FH_JSI9i_2	51.346	27.374			0.86124	0.87927	21.899	5	0	Median	1.1008	0.96874	NaN	1	0	Median	0.53456	0.6631	NaN	1	0	Median	0.61425	0.62121	NaN	1	0	Median	0.87472	0.93568	8.7944	2	0	Median	553190000	304160000	249030000	102990000	46548000	56444000	111010000	66532000	44480000	111780000	65178000	46606000	227400000	125900000	101500000	27066	803;944	25641	169660;169661;169662;169663;169664	229615;229616;229617;229618	229615			4	
KDGKPVQPVK	3	Unmodified	1094.6448	0.64479354	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	5.8845	5.3882	3	0.0024245	3442	160511_QHF_FH_JSI10i_3	60.255	42.436			0.62113	0.69499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62113	0.69499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135380000	83556000	51829000	0	0	0	135380000	83556000	51829000	0	0	0	0	0	0	27067	4182	25642	169665;169666;169667;169668;169669	229619;229620;229621;229622;229623	229621			5	
KDGKPVQPVK	3	Acetyl (K)	1136.6554	0.65535823	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14	0							2				1		1	21.255	12.603	3	0.017556	8631	160513_QHF_FH_JSI10Kac_4	48.981	39.326			0.88205	0.99688	49.532	2	0	Median	NaN	NaN	NaN	0	0	Median	1.202	1.415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64728	0.70231	NaN	1	0	Median	17944000	9670900	8272700	0	0	0	9695900	4371200	5324600	0	0	0	8247800	5299700	2948100	27068	4182	25642	169670;169671	229624;229625;229626	229624	3071;3072		3	
KDKDPVNK	3	Unmodified	942.51345	0.51344502	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	1.6842	1.5898	3	0.0017658	21	160511_QHF_FH_JSI12i_3	88.948	68.078			0.31558	0.32884	165.64	4	4	Median	NaN	NaN	NaN	0	0	Median	0.26852	0.31176	NaN	1	1	Median	1.6227	1.5134	208.34	2	2	Median	0.16027	0.15959	NaN	1	1	Median	254960000	129130000	125830000	0	0	0	24552000	19072000	5480100	153010000	46960000	106050000	77401000	63100000	14302000	27069	2026	25643	169672;169673;169674;169675	229627;229628;229629;229630;229631	229631			5	
KDLYANTVLSGGTTMYPGIADR	1	Unmodified	2342.1576	0.15764621	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	71.626	71.478	3	2.9125E-18	61914	160511_QHF_FH_JSI12i_3	134.87	119.15			1.0702	1.0426	103.28	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53411	0.50228	NaN	1	1	Median	2.1443	2.1641	NaN	1	1	Median	78762000	40498000	38263000	0	0	0	0	0	0	43213000	28263000	14949000	35549000	12235000	23314000	27070	1916;2062	25644	169676;169677;169678	229632;229633;229634;229635	229635			4	
KDPATQQAFVFGQNLR	1	Unmodified	1818.9377	0.9376811	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	56.773	55.853	2;3	4.1489E-06	46602	160511_QHF_FH_JSI10i_3	103.39	92.753			0.90139	0.98707	14.496	7	0	Median	1.3332	1.0809	3.8018	2	0	Median	0.85883	0.99264	0.79579	2	0	Median	0.92911	0.87249	2.9391	2	0	Median	0.71572	0.72462	NaN	1	0	Median	1016000000	524300000	491710000	196020000	93579000	102450000	270080000	139120000	130960000	454060000	230890000	223170000	95844000	60704000	35140000	27071	4759	25645	169679;169680;169681;169682;169683;169684;169685	229636;229637;229638;229639;229640;229641;229642;229643;229644;229645;229646	229640			11	
KDPDINMHPFFFALGK	2	Unmodified	1875.9342	0.93417563	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	86.56	86.418	3	0.0009949	74916	160511_QHF_FH_JSI12i_3	52.522	42.183			1.2613	1.2597	33.792	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2613	1.2597	33.792	2	1	Median	53617000	27678000	25939000	0	0	0	0	0	0	0	0	0	53617000	27678000	25939000	27072	415	25646	169686;169687	229647;229648;229649	229647			3	
KDPDMVK	2	Unmodified	831.41604	0.41603916	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		8.1466	7.9495	3	0.029281	5562	160511_QHF_FH_JSI11i_2	34.253	19.477			3.5363	3.5207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5363	3.5207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63712000	21117000	42595000	0	0	0	0	0	0	63712000	21117000	42595000	0	0	0	27073	1664	25647	169688	229650	229650			1	
KDPELFLGLASNILNFITSSMLNSR	1	Unmodified	2779.4579	0.45785098	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			104.51	98.787	3	1.4166E-64	58481	160513_QHF_FH_JSI10Kac_6	196.41	174.55			0.69737	0.8333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69737	0.8333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	616220000	295430000	320790000	0	0	0	616220000	295430000	320790000	0	0	0	0	0	0	27074	2947	25648	169689	229651;229652	229652			2	
KDPEQEVEK	2	Unmodified	1100.535	0.53496832	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.752	8.4013	2	0.00014326	6381	160511_QHF_FH_JSI12i_1	90.15	49.882			0.87008	0.88668	4.8957	4	1	Median	1.1465	0.94095	NaN	1	1	Median	0.75034	0.87528	NaN	1	0	Median	0.92294	0.89823	NaN	1	0	Median	0.82025	0.83699	NaN	1	0	Median	301180000	170090000	131080000	70526000	33971000	36555000	72294000	41967000	30327000	74507000	38646000	35861000	83850000	55508000	28342000	27075	4521	25649	169690;169691;169692;169693	229653;229654;229655;229656;229657	229655			5	
KDPGNEVK	2	Unmodified	885.4556	0.45559579	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	3	1	5.0418	3.8953	2	0.0047467	2505	160511_QHF_FH_JSI11i_1	67.993	36.058			0.9407	0.99924	25.973	9	0	Median	1.2346	1.0681	9.4278	2	0	Median	0.85244	0.96937	25.493	3	0	Median	1.5858	1.5806	38.223	3	0	Plateau	0.88076	0.94957	NaN	1	0	Median	13084000000	6372700000	6711000000	5651600000	2493700000	3157900000	6566000000	3525000000	3041000000	631720000	246040000	385680000	234300000	107880000	126430000	27076	538	25650	169694;169695;169696;169697;169698;169699;169700;169701;169702	229658;229659;229660;229661;229662;229663;229664;229665	229660			7	
KDPGNEVKLK	3	Acetyl (K)	1168.6452	0.64518747	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	1	0	0	2		By MS/MS			14	0							1				1			25.851	16.261	3	0.023485	10734	160513_QHF_FH_JSI10Kac_4	47.288	35.557			0.93882	1.1195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93882	1.1195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9384400	4933300	4451000	0	0	0	9384400	4933300	4451000	0	0	0	0	0	0	27077	538	25651	169703	229666	229666	278		1	
KDPGVPNSAPFK	2	Unmodified	1255.6561	0.65608651	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	30.964	30.397	2;3	2.2924E-05	26074	160511_QHF_FH_JSI11i_3	73.881	62.935			0.94564	0.98239	16.388	8	0	Median	1.1804	1.0199	0.30578	2	0	Median	0.91191	1.0979	10.185	2	0	Median	0.89692	0.84455	16.393	2	0	Median	0.80696	0.80427	13.416	2	0	Median	3414500000	1787100000	1627400000	82641000	33978000	48663000	258120000	125980000	132140000	1306700000	597920000	708830000	1767000000	1029200000	737810000	27078	4481	25652	169704;169705;169706;169707;169708;169709;169710;169711;169712	229667;229668;229669;229670;229671;229672;229673;229674;229675;229676	229667			10	
KDPPWITLVQAEPK	2	Unmodified	1620.8875	0.88754301	3519	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.039	73.039	3	0.00049852	65125	160511_QHF_FH_JSI11i_3	71.344	59.73			1.084	0.99649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.084	0.99649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21045000	9403000	11642000	0	0	0	0	0	0	21045000	9403000	11642000	0	0	0	27079	3519	25653	169713	229677	229677			1	
KDPQGLGLHFYK	2	Unmodified	1401.7405	0.74048484	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	3	3	3	44.357	43.659	2;3;4	6.4481E-06	38148	160511_QHF_FH_JSI11i_3	91.62	72.788			0.94294	0.90703	24.479	10	2	Median	1.292	1.0215	NaN	1	0	Median	1.175	1.3782	34.525	3	1	Plateau	0.86968	0.82073	19.058	3	0	Median	0.78172	0.79036	17.681	3	1	Median	2537200000	1353300000	1183900000	167410000	74680000	92728000	431780000	207680000	224090000	753750000	429100000	324660000	1184300000	641850000	542410000	27080	558	25654	169714;169715;169716;169717;169718;169719;169720;169721;169722;169723;169724	229678;229679;229680;229681;229682;229683;229684;229685;229686;229687;229688;229689;229690;229691;229692;229693;229694;229695;229696;229697;229698;229699;229700;229701;229702;229703;229704	229684			27	
KDPSGLSGDVLINGAPR	1	Unmodified	1694.8951	0.89514758	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.993	51.758	3	0.0051084	44358	160511_QHF_FH_JSI12i_3	47.568	35.185			1.345	1.3585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.345	1.3585	NaN	1	1	Median	35435000	15257000	20177000	0	0	0	0	0	0	0	0	0	35435000	15257000	20177000	27081	5445	25655	169725	229705	229705			1	
KDPSGLSGDVLINGAPRPANFK	2	Unmodified	2252.1913	0.1913296	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		61.69	60.781	3;4	9.6128E-13	49973	160511_QHF_FH_JSI9i_3	118.46	105.03			0.95465	0.85523	16.894	5	2	Median	1.0534	0.85612	13.262	2	1	Median	0.60754	0.69391	NaN	1	0	Median	1.026	0.95955	16.277	2	1	Median	NaN	NaN	NaN	0	0	Median	540400000	265070000	275330000	173130000	86756000	86369000	47813000	29958000	17854000	319460000	148350000	171110000	0	0	0	27082	5445	25656	169726;169727;169728;169729;169730	229706;229707;229708;229709;229710;229711;229712;229713	229711			7	
KDPVKIVR	2	Acetyl (K)	995.61277	0.61276513	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.748							2	4	4	2	3	2	3	29.825	20.872	3	0.013542	11814	160513_QHF_FH_JSI12Kac_5	64.04	35.313			0.95468	0.96452	15.282	10	0	Median	1.0948	0.93703	0.85107	2	0	Median	0.82532	0.98686	15.461	3	0	Median	0.81342	0.78939	8.4171	2	0	Median	0.95727	1.0412	9.4316	3	0	Median	222380000	112110000	110270000	42256000	17066000	25190000	61488000	33210000	28278000	59338000	31455000	27883000	59299000	30384000	28915000	27083	5395	25657	169731;169732;169733;169734;169735;169736;169737;169738;169739;169740	229714;229715;229716;229717;229718;229719;229720;229721	229717	3386		8	
KDQYFLDK	2	Acetyl (K)	1097.5393	0.53932542	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	1	0	0	1		By MS/MS			13.5	0.5						1	1				2			51.223	41.326	2	0.031112	22868	160513_QHF_FH_JSI10Kac_4	64.841	27.113			0.64772	0.76175	8.9095	2	1	Median	NaN	NaN	NaN	0	0	Median	0.64772	0.76175	8.9095	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12463000	6578900	5884100	0	0	0	12463000	6578900	5884100	0	0	0	0	0	0	27084	5479	25658	169741;169742	229722;229723	229722	3442		2	
KDQYFLDK	2	Unmodified	1055.5288	0.52876073	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	25.287	25.255	2	0.0053096	21007	160511_QHF_FH_JSI12i_3	66.299	25.27			1.3624	1.402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3624	1.402	NaN	1	0	Median	41153000	17899000	23254000	0	0	0	0	0	0	0	0	0	41153000	17899000	23254000	27085	5479	25658	169743	229724;229725	229725			2	
KDSETGENIR	1	Unmodified	1147.5469	0.54692999	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	4.89	3	8	6				2	2		4	4	6	7	6.019	4.0443	2;3	2.7946E-11	3337	160511_QHF_FH_JSI12i_3	151.15	117.35			0.93308	0.89736	32.12	21	2	Median	1.7533	1.506	35.008	4	1	Median	0.50118	0.59967	8.329	4	0	Median	0.8821	0.87654	8.0278	6	0	Median	1.1318	1.182	5.0305	7	1	Median	4709800000	2325900000	2383900000	753260000	231400000	521860000	594240000	378490000	215750000	1737400000	921450000	815980000	1624900000	794600000	830300000	27086	1480	25659	169744;169745;169746;169747;169748;169749;169750;169751;169752;169753;169754;169755;169756;169757;169758;169759;169760;169761;169762;169763;169764	229726;229727;229728;229729;229730;229731;229732;229733;229734;229735;229736;229737;229738;229739;229740;229741;229742;229743;229744;229745;229746;229747;229748;229749;229750;229751;229752;229753;229754;229755	229754			30	
KDSQVVEK	2	Unmodified	931.49746	0.4974606	2290	Q0VDD8	DNAH14	Dynein heavy chain 14, axonemal	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	3	3	2							1	1	3	3	33.456	32.953	2	0.011653	29564	160511_QHF_FH_JSI11i_3	54.157	14.615			0.79766	0.76425	30.353	8	0	Median	0.79066	0.67494	NaN	1	0	Median	0.62592	0.71585	NaN	1	0	Median	0.82521	0.81592	42.478	3	0	Median	0.80473	0.91712	30.925	3	0	Median	1420400000	779940000	640500000	331910000	188290000	143620000	117660000	73441000	44221000	259160000	141140000	118020000	711710000	377070000	334640000	27087	2290	25660	169765;169766;169767;169768;169769;169770;169771;169772	229756;229757;229758;229759;229760	229756			5	
KDVDEAYMNK	2	Unmodified	1211.5492	0.54923818	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1		By MS/MS			1	0	2										2			15.936	15.692	2	0.0077667	13241	160511_QHF_FH_JSI10i_1	66.758	45.888		+	0.74349	0.85492	67.972	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74349	0.85492	67.972	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69129000	37290000	31839000	0	0	0	69129000	37290000	31839000	0	0	0	0	0	0	27088	51	25661	169773;169774	229761;229762	229762			2	
KDVHMPK	2	Unmodified	853.44801	0.44800799	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	6.9017	6.7852	2;3	0.0048766	4130	160511_QHF_FH_JSI12i_3	54.157	39.382			1.0127	1.0238	12.951	6	0	Median	1.167	1.005	NaN	1	0	Median	0.95909	1.1765	NaN	1	0	Median	1.1519	1.0975	7.1942	2	0	Median	0.87042	0.8743	0.75116	2	0	Median	1738700000	875300000	863380000	23745000	14294000	9450600	23575000	14090000	9485400	623550000	295020000	328530000	1067800000	551900000	515910000	27089	1595	25662	169775;169776;169777;169778;169779;169780	229763;229764;229765;229766;229767;229768;229769	229766			7	
KDVHMPK	2	Acetyl (K)	895.45857	0.45857268	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	1	0	0	1	By MS/MS				15	0								1		1				26.653	17.241	3	0.039774	10790	160513_QHF_FH_JSI9Kac_5	40.067	23.103			17.35	14.255	NaN	1	1	Median	17.35	14.255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1865300	90259	1775000	1865300	90259	1775000	0	0	0	0	0	0	0	0	0	27090	1595	25662	169781	229770	229770	1622		1	
KDVSGPMPDSYSPR	1	Unmodified	1534.7086	0.70859237	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	28.934	28.752	2;3	8.9212E-05	24058	160511_QHF_FH_JSI12i_3	77.42	71.7			1.1457	1.2009	55.161	6	5	Median	NaN	NaN	NaN	0	0	Median	0.91947	1.1414	NaN	1	1	Median	1.1798	1.0988	19.76	2	2	Median	1.2997	1.3198	84.431	3	2	Median	369680000	176420000	193260000	0	0	0	68806000	39387000	29419000	153420000	76020000	77397000	147460000	61008000	86448000	27091	1283	25663	169782;169783;169784;169785;169786;169787	229771;229772;229773;229774;229775;229776;229777	229774			7	
KEDALLYQSK	2	Unmodified	1193.6292	0.62920306	1703	P50402	EMD	Emerin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	22.26	21.443	2;3	0.00041771	17842	160511_QHF_FH_JSI12i_2	75.416	60.747			0.60278	0.73315	42.748	7	2	Median	1.0823	0.9389	NaN	1	0	Median	0.56879	0.70036	9.4026	2	0	Median	0.74213	0.75354	97.221	2	2	Median	0.57315	0.63866	19.512	2	0	Median	817550000	493370000	324180000	97733000	49930000	47803000	213080000	136210000	76868000	270360000	164370000	106000000	236380000	142860000	93515000	27092	1703	25664	169788;169789;169790;169791;169792;169793;169794	229778;229779;229780;229781;229782;229783;229784;229785;229786	229778			9	
KEDELGDR	1	Unmodified	960.45124	0.45123869	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	5.8267	5.4369	2	0.003321	3378	160511_QHF_FH_JSI9i_2	81.972	47.585			0.90616	0.94334	13.57	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86446	0.85703	NaN	1	0	Median	0.94988	1.0383	NaN	1	0	Median	394180000	218410000	175770000	0	0	0	0	0	0	205850000	117380000	88467000	188330000	101030000	87302000	27093	2490	25665	169795;169796;169797	229787;229788	229788			2	
KEDEVQAIATLIEK	2	Unmodified	1585.8563	0.85630246	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	78.832	77.916	3	0.056556	67412	160511_QHF_FH_JSI12i_2	32.715	18.029			0.91849	0.91945	6.1223	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93644	0.8805	NaN	1	0	Median	0.90088	0.96013	NaN	1	0	Median	30767000	11504000	19262000	0	0	0	0	0	0	16575000	7933000	8642200	14192000	3571400	10620000	27094	4176	25666	169798;169799	229789	229789			0	
KEDGSEVGVGGAQVTGSNTRK	2	Unmodified	2075.0243	0.024323855	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							1	2			17.428	16.334	3	7.1951E-06	13280	160511_QHF_FH_JSI10i_3	74.698	71.094			1.5029	1.4687	50.36	2	1	Median	2.452	2.0969	NaN	1	1	Median	0.92119	1.0287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30708000	11766000	18942000	9566600	1683900	7882700	21142000	10082000	11059000	0	0	0	0	0	0	27095	2455	25667	169800;169801;169802	229790;229791;229792	229790			3	
KEDGTFYEFGEDIPEAPER	1	Unmodified	2227.991	0.99095804	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	3	3	69.47	68.793	3	6.1829E-07	59319	160511_QHF_FH_JSI12i_2	97.488	89.496			1.058	1.1812	16.154	7	2	Median	1.5307	1.2962	7.8902	2	1	Median	0.94364	1.1896	NaN	1	0	Median	1.0598	1.0335	9.5759	2	1	Median	0.93703	0.99913	23.678	2	0	Median	456140000	230920000	225220000	106680000	38784000	67898000	95891000	57725000	38166000	129360000	68213000	61150000	124200000	66194000	58008000	27096	375	25668	169803;169804;169805;169806;169807;169808;169809;169810;169811	229793;229794;229795;229796;229797;229798;229799;229800;229801;229802;229803;229804;229805;229806;229807	229795			15	
KEDINLSVR	1	Unmodified	1072.5877	0.58767259	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	4.86		5	4					2		2	2	4	3	28.227	26.043	2;3	0.0020155	15422	160513_QHF_FH_JSI11Kac_5	50.353	30.592			1.1728	1.0769	61.065	11	1	Median	2.1764	1.8393	91.158	2	1	Median	1.6267	2.0061	136.57	2	0	Median	1.2209	1.1559	26.498	4	0	Median	1.262	1.2669	22.986	3	0	Plateau	785450000	370310000	415140000	58476000	13785000	44691000	128820000	59915000	68904000	272420000	134520000	137910000	325730000	162090000	163640000	27097	2692	25669	169812;169813;169814;169815;169816;169817;169818;169819;169820;169821;169822	229808;229809;229810;229811;229812;229813;229814;229815;229816	229813			7	
KEDINLSVRK	2	Unmodified	1200.6826	0.68263561	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		20.382	19.579	3	8.0657E-06	16225	160511_QHF_FH_JSI11i_3	107.06	79.726			0.7907	0.78667	32.411	3	0	Median	1.7048	1.3556	NaN	1	0	Median	0.68858	0.78667	NaN	1	0	Median	0.7907	0.76123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	498190000	263250000	234940000	169910000	68859000	101060000	151990000	95429000	56564000	176280000	98962000	77321000	0	0	0	27098	2692	25670	169823;169824;169825;169826	229817;229818;229819;229820	229819			4	
KEDLELIMTEMEISR	1	Unmodified	1835.9009	0.90088617	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			87.153	86.597	3	0.00038341	76929	160511_QHF_FH_JSI10i_2	59.261	53.357			0.75694	0.95613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75694	0.95613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11656000	6542600	5113300	0	0	0	11656000	6542600	5113300	0	0	0	0	0	0	27099	5093	25671	169827	229821;229822	229822			2	
KEDLISAFGTDDQTEICK	2	Unmodified	2068.9623	0.96230045	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	63.64	62.337	3	4.9566E-05	53559	160511_QHF_FH_JSI12i_2	86.479	76.73			0.80056	0.84826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80056	0.84826	NaN	1	1	Median	23933000	19430000	4502400	0	0	0	0	0	0	0	0	0	23933000	19430000	4502400	27100	5569	25672	169828	229823	229823			1	
KEDLRPSAPQQEGEASK	2	Unmodified	1868.9228	0.9228189	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.24		4	3					2		2	3	3	1	16.686	14.206	3;4	5.1181E-05	11697	160511_QHF_FH_JSI11i_3	74.786	63.841			1.0184	0.96165	24.279	9	0	Median	1.1996	1.0428	0.26792	2	0	Median	0.53628	0.65221	16.42	3	0	Median	0.94881	0.9055	9.421	3	0	Plateau	1.0906	1.2064	NaN	1	0	Median	944960000	491190000	453770000	322600000	156360000	166240000	312370000	193180000	119190000	304800000	140110000	164700000	5184700	1548200	3636500	27101	599	25673	169829;169830;169831;169832;169833;169834;169835;169836;169837	229824;229825;229826;229827;229828;229829;229830;229831;229832;229833;229834;229835;229836;229837	229826			13	
KEDLVFIFWAPESAPLK	2	Unmodified	1989.0612	0.061150279	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.38		8	6	3					10	6	9	6	6	97.266	93.548	2;3;4	3.1112E-82	46663	160513_QHF_FH_JSI9Kac_6	220.61	220.61			1.0284	1.0244	16.282	25	6	Median	1.0921	0.92695	25.524	6	2	Median	0.82019	0.97472	16.622	7	3	Median	1.0929	1.0656	13.252	6	0	Median	0.95634	1.0034	8.495	6	1	Median	27868000000	13749000000	14119000000	4580100000	1878900000	2701100000	10373000000	5695000000	4678200000	6451500000	3109900000	3341700000	6463100000	3064900000	3398200000	27102	1236;5500	25674	169838;169839;169840;169841;169842;169843;169844;169845;169846;169847;169848;169849;169850;169851;169852;169853;169854;169855;169856;169857;169858;169859;169860;169861;169862;169863;169864	229838;229839;229840;229841;229842;229843;229844;229845;229846;229847;229848;229849;229850;229851;229852;229853;229854;229855;229856;229857;229858;229859;229860;229861;229862;229863;229864;229865;229866;229867;229868;229869;229870;229871;229872;229873;229874;229875;229876;229877;229878;229879;229880;229881;229882	229865			45	
KEDLYLK	2	Unmodified	907.50148	0.50148335	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	3	2	3	20.529	19.601	2;3	0.007924	16586	160511_QHF_FH_JSI9i_2	47.849	4.0408			0.52822	0.56606	77.559	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75922	0.78275	NaN	1	0	Median	0.3675	0.40936	94.021	3	3	Median	2183000000	1095300000	1087600000	0	0	0	0	0	0	963210000	491120000	472090000	1219800000	604210000	615560000	27103	1033	25675	169865;169866;169867;169868;169869;169870;169871;169872;169873;169874	229883;229884;229885;229886;229887;229888;229889;229890;229891;229892;229893	229889			11	
KEDLYLKPIQR	2	Unmodified	1401.798	0.79799972	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	3.32		3	11						1	5	4	4	2	34.35	33.057	2;3;4	8.3611E-06	28600	160511_QHF_FH_JSI11i_3	102.4	90.481			0.78338	0.88705	41.444	15	4	Median	1.6659	1.4182	21.107	5	3	Median	0.7573	0.89305	14.256	4	0	Median	0.55761	0.54781	7.2737	4	1	Linear	0.74184	0.74785	14.553	2	0	Median	5609300000	2765200000	2844100000	1116300000	454500000	661800000	1719000000	790900000	928080000	2367900000	1280300000	1087600000	406130000	239470000	166660000	27104	1033	25676	169875;169876;169877;169878;169879;169880;169881;169882;169883;169884;169885;169886;169887;169888;169889	229894;229895;229896;229897;229898;229899;229900;229901;229902;229903;229904;229905;229906;229907;229908;229909;229910;229911;229912;229913;229914;229915;229916;229917;229918	229896			24	
KEDLYLKPIQR	2	Acetyl (K)	1443.8086	0.80856441	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.737							2	4	3	2	2	2	3	58.568	48.33	3	0.0014798	24544	160513_QHF_FH_JSI10Kac_5	78.692	59.014			0.72455	0.78456	32.525	9	0	Median	1.1121	0.93957	8.5202	2	0	Median	0.81965	0.97134	7.903	2	0	Median	0.45114	0.44204	11.268	2	0	Median	0.6328	0.69534	10.516	3	0	Median	273670000	167470000	106210000	33060000	15841000	17220000	59069000	32550000	26519000	116960000	81360000	35599000	64586000	37719000	26867000	27105	1033	25676	169890;169891;169892;169893;169894;169895;169896;169897;169898	229919;229920;229921;229922;229923;229924;229925	229925	849		7	
KEDMTYAVR	1	Unmodified	1111.5332	0.53319418	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	17.022	16.609	2	0.016508	13670	160511_QHF_FH_JSI12i_2	49.418	33.215			0.63753	0.65304	29.042	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61852	0.62467	NaN	1	0	Median	0.98346	1.0303	4.1805	2	0	Median	151630000	77668000	73959000	0	0	0	0	0	0	83736000	44638000	39098000	67891000	33030000	34861000	27106	2260	25677	169899;169900;169901	229926	229926			1	
KEDQYMK	2	Unmodified	940.43242	0.43241751	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	6.3512	5.9096	2;3	0.020792	4007	160511_QHF_FH_JSI10i_2	57.047	32.893			0.93173	0.94357	42.563	5	1	Median	1.0234	0.87042	NaN	1	0	Median	0.93173	1.1035	NaN	1	0	Median	0.39946	0.39365	NaN	1	1	Median	0.89769	1.0086	9.4276	2	0	Median	313820000	162010000	151810000	66777000	24292000	42486000	50149000	31277000	18872000	64277000	40718000	23559000	132610000	65723000	66891000	27107	1791	25678	169902;169903;169904;169905;169906	229927;229928;229929;229930	229930			4	
KEDWNEIDPIK	2	Unmodified	1385.6827	0.68269519	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	52.056	51.075	2;3	2.5107E-05	43993	160511_QHF_FH_JSI11i_2	75.695	61.438			0.82079	0.87092	17.838	7	3	Median	1.0075	0.86326	19.952	2	1	Median	0.68089	0.82048	NaN	1	1	Median	0.72744	0.73733	33.242	2	0	Median	0.80036	0.88715	2.6108	2	1	Median	583310000	326710000	256600000	103580000	49839000	53745000	119920000	70515000	49409000	255720000	151500000	104220000	104080000	54856000	49224000	27108	2294	25679	169907;169908;169909;169910;169911;169912;169913	229931;229932;229933;229934;229935;229936;229937;229938	229937			8	
KEEAEVKPEVK	3	Unmodified	1284.6925	0.6925316	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							2	2	4	4	9.8337	9.6148	2;3;4	0.00021439	7133	160511_QHF_FH_JSI11i_3	70.089	53.836			0.61229	0.88054	28.582	12	0	Linear	1.4529	1.2538	11.596	2	0	Median	1.0357	1.2665	29.698	2	0	Median	0.81903	0.76781	12.677	4	0	Median	0.61684	0.63074	20.14	4	0	Linear	2034000000	1133300000	900690000	124520000	61516000	63007000	168200000	77844000	90352000	813060000	438450000	374610000	928260000	555540000	372720000	27109	571	25680	169914;169915;169916;169917;169918;169919;169920;169921;169922;169923;169924;169925	229939;229940;229941;229942;229943;229944;229945;229946;229947;229948;229949;229950	229939			9	
KEEAIRK	2	Unmodified	872.50797	0.50796571	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		0.77711	0.77711	3	0.026224	352	160511_QHF_FH_JSI11i_3	50.703	9.051			4.2188	3.8615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.2188	3.8615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93109000	23197000	69911000	0	0	0	0	0	0	93109000	23197000	69911000	0	0	0	27110	1085	25681	169926	229951	229951			1	
KEECPAVR	1	Unmodified	987.48076	0.48076468	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.29	4.4		3	3					1			1	4	2	6.1728	4.6549	2;3	0.0067508	3564	160511_QHF_FH_JSI11i_2	61.962	37.99			0.96263	0.99964	20.039	7	0	Median	NaN	NaN	NaN	0	0	Median	0.96263	1.178	NaN	1	0	Median	0.91124	0.85809	8.7838	4	0	Median	1.21	1.2532	16.08	2	0	Median	670650000	346040000	324610000	0	0	0	72415000	34327000	38088000	403610000	224990000	178620000	194630000	86727000	107900000	27111	867	25682	169927;169928;169929;169930;169931;169932;169933	229952;229953;229954;229955;229956;229957;229958;229959;229960;229961	229955			10	
KEEDLEDK	2	Unmodified	1004.4662	0.46622005	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		6.4398	6.1093	2	0.002606	3854	160511_QHF_FH_JSI11i_1	79.148	32.722			1.8246	1.5089	28.689	3	1	Median	1.8246	1.5089	NaN	1	1	Median	1.8251	2.1445	NaN	1	0	Median	1.2514	1.2146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205150000	91831000	113320000	67186000	30778000	36408000	56308000	27781000	28527000	81659000	33272000	48388000	0	0	0	27112	3852	25683	169934;169935;169936	229962;229963	229962			2	
KEEEAVLVGGEWSPSLDGLDPQADPQVLVR	1	Unmodified	3232.6252	0.6251869	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	99.274	99.031	3	0.027345	85154	160511_QHF_FH_JSI12i_2	20.592	18.454			1.0423	1.1109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0423	1.1109	NaN	1	1	Median	7655900	5806600	1849300	0	0	0	0	0	0	0	0	0	7655900	5806600	1849300	27113	3499	25684	169937	229964	229964			1	
KEEEEEEEEYDEGSNLK	2	Unmodified	2084.8546	0.85458372	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	1	3	24.512	23.869	2;3	3.2298E-10	21045	160511_QHF_FH_JSI12i_1	138.87	124.61			0.9782	1.0061	46.132	7	3	Median	0.98364	0.79917	30.823	2	1	Median	0.90792	1.0912	NaN	1	0	Median	1.0282	1.0061	NaN	1	0	Median	0.9782	1.0269	74.122	3	2	Median	347480000	163610000	183870000	62461000	31110000	31351000	78811000	35270000	43541000	83761000	41371000	42390000	122450000	55862000	66584000	27114	2508	25685	169938;169939;169940;169941;169942;169943;169944;169945	229965;229966;229967;229968;229969;229970;229971;229972;229973;229974;229975;229976;229977;229978;229979	229971			14	
KEEEESQPAK	2	Unmodified	1173.5513	0.55134667	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	4.682	4.3403	2	0.0019824	2281	160511_QHF_FH_JSI12i_1	79.311	51.568			0.82038	0.84221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82038	0.84221	NaN	1	1	Median	100820000	55741000	45078000	0	0	0	0	0	0	0	0	0	100820000	55741000	45078000	27115	521	25686	169946	229980	229980			1	
KEEEESQPAKK	3	Unmodified	1301.6463	0.64630969	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							2	1	2	1	4.248	3.905	2;3	2.5628E-07	2132	160511_QHF_FH_JSI10i_2	122.45	102.6			1.3536	1.5601	39.074	4	0	Median	2.7838	2.3633	NaN	1	0	Median	1.4384	1.7678	NaN	1	0	Median	1.0181	0.94027	NaN	1	0	Median	1.2738	1.3769	NaN	1	0	Median	625150000	215020000	410130000	245860000	59995000	185870000	275590000	105070000	170520000	72286000	36256000	36031000	31410000	13703000	17707000	27116	521	25687	169947;169948;169949;169950;169951;169952	229981;229982;229983;229984;229985;229986	229986			6	
KEEELQAALAR	1	Unmodified	1256.6725	0.67246486	1436;1445;3263	P35579;Q7Z406;P35749	MYH9;MYH14;MYH11	Myosin-9;Myosin-14;Myosin-11	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.41	2	8	3				1	3		2	3	6	6	30.766	28.016	2;3	4.7188E-07	23657	160511_QHF_FH_JSI12i_2	99.283	71.979			0.88129	0.91054	25.991	17	2	Median	1.0718	0.90868	0.28955	2	0	Median	0.6776	0.83386	11.031	3	0	Median	0.87816	0.85617	25.277	6	0	Median	0.91093	1.0155	37.838	6	2	Median	3081300000	1633400000	1447900000	488370000	224900000	263470000	649940000	356950000	292990000	642460000	316510000	325950000	1300500000	735050000	565450000	27117	1436;3263;1445	25688	169953;169954;169955;169956;169957;169958;169959;169960;169961;169962;169963;169964;169965;169966;169967;169968;169969	229987;229988;229989;229990;229991;229992;229993;229994;229995;229996;229997;229998;229999;230000;230001;230002;230003;230004;230005;230006;230007;230008;230009;230010;230011;230012	229991			25	
KEEENASVIDSAELQAYPALVVEK	2	Unmodified	2631.3279	0.32794224	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	82.16	81.647	3	2.3183E-08	74400	160511_QHF_FH_JSI12i_1	83.09	69.218			1.8674	1.9585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8674	1.9585	NaN	1	1	Median	21297000	7676400	13621000	0	0	0	0	0	0	0	0	0	21297000	7676400	13621000	27118	2094	25689	169970	230013;230014	230013			2	
KEEGEAFAR	1	Unmodified	1035.4985	0.49852324	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.24		8	3					3		3	2	4	5	9.4189	7.1473	2;3	5.3244E-05	6041	160511_QHF_FH_JSI11i_3	84.817	70.699			0.85483	0.92216	12.536	14	0	Median	1.2779	1.0881	13.651	3	0	Median	0.81582	0.99228	3.9588	2	0	Median	0.90353	0.87312	7.5173	4	0	Median	0.82189	0.86038	7.3373	5	0	Median	3103300000	1592900000	1510400000	383670000	155720000	227960000	465910000	258680000	207240000	965390000	469770000	495620000	1288300000	708770000	579540000	27119	1930	25690	169971;169972;169973;169974;169975;169976;169977;169978;169979;169980;169981;169982;169983;169984	230015;230016;230017;230018;230019;230020;230021;230022;230023;230024;230025;230026;230027;230028;230029;230030;230031;230032;230033;230034;230035;230036	230015			22	
KEEIIKTLSK	3	Acetyl (K)	1229.7231	0.72310344	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	1	0	0	2			By MS/MS	By MS/MS	15	0								2				1	1	46.281	36.005	3	0.013858	18908	160513_QHF_FH_JSI12Kac_5	68.536	68.536			0.42175	0.41457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42175	0.41457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19754000	14545000	5208900	0	0	0	0	0	0	14073000	8864200	5208900	5680600	5680600	0	27120	2129	25691	169985;169986	230037;230038	230038	2229		2	
KEEILLIK	2	Unmodified	984.62193	0.62193284	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	41.244	40.778	3	0.0050009	35267	160511_QHF_FH_JSI12i_2	48.283	8.2815			0.92018	0.94167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92018	0.94167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62266000	27318000	34947000	0	0	0	0	0	0	62266000	27318000	34947000	0	0	0	27121	1296	25692	169987;169988;169989;169990;169991	230039;230040;230041;230042;230043	230039			5	
KEEITGTLRK	2	Unmodified	1173.6717	0.67173657	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		12.73	12.178	3	0.00025337	9457	160511_QHF_FH_JSI11i_3	80.834	63.001			1.0607	0.78217	29.98	3	0	Plateau	1.5075	1.2475	NaN	1	0	Median	0.66766	0.78217	NaN	1	0	Median	0.74627	0.71309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	861320000	373160000	488160000	308830000	96394000	212440000	256420000	133510000	122920000	296060000	143260000	152800000	0	0	0	27122	5616	25693	169992;169993;169994	230044;230045;230046;230047	230044			3	
KEELIGIAYNR	1	Unmodified	1304.7089	0.70885036	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	42.229	42.118	2	0.00016083	35971	160511_QHF_FH_JSI12i_3	83.081	65.217			1.0194	1.021	0.33112	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0523	1.0186	NaN	1	0	Median	0.98759	1.0234	NaN	1	0	Median	137270000	79570000	57697000	0	0	0	0	0	0	62386000	31829000	30557000	74882000	47741000	27140000	27123	3965	25694	169995;169996	230048;230049;230050	230050			3	
KEELMFFLWAPELAPLK	2	Unmodified	2061.1009	0.1009066	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	96.881	89.062	2;3	4.2092E-42	52767	160513_QHF_FH_JSI10Kac_6	185.62	165.61			0.75821	0.9069	14.27	5	0	Median	1.1016	0.9425	22.936	2	0	Median	0.75471	0.90696	0.0090625	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73197	0.76844	NaN	1	0	Median	1469200000	775040000	694110000	433030000	185500000	247520000	832920000	478340000	354570000	0	0	0	203210000	111200000	92012000	27124	1925	25695	169997;169998;169999;170000;170001	230051;230052;230053;230054;230055;230056;230057;230058;230059	230057			9	
KEELTLEGIR	1	Unmodified	1186.6558	0.65575216	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.99		8	7					5	2	7	4	5	6	43.518	40.015	2;3	2.5024E-09	33822	160511_QHF_FH_JSI12i_3	128.81	81.208			1.0439	1.0291	9.5616	21	0	Median	1.1651	0.99387	8.6343	6	0	Median	0.85885	1.0427	6.609	4	0	Median	1.0439	1.0393	4.9025	5	0	Median	0.99626	1.0561	15.027	6	0	Median	10890000000	5276800000	5613000000	1722300000	807580000	914670000	1961300000	1051400000	909870000	3676900000	1728800000	1948100000	3529300000	1689000000	1840300000	27125	1917	25696	170002;170003;170004;170005;170006;170007;170008;170009;170010;170011;170012;170013;170014;170015;170016;170017;170018;170019;170020;170021;170022;170023	230060;230061;230062;230063;230064;230065;230066;230067;230068;230069;230070;230071;230072;230073;230074;230075;230076;230077;230078;230079;230080;230081;230082;230083;230084;230085;230086;230087;230088;230089;230090;230091;230092;230093;230094;230095;230096;230097;230098;230099;230100;230101;230102;230103	230099			44	
KEELVAEQALK	2	Unmodified	1256.6976	0.69761697	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	3.57	2	17					2			4	6	5	6	30.73	29.005	2;3	1.7537E-13	26184	160511_QHF_FH_JSI9i_2	135.99	0			0.98146	1.0363	27.675	20	5	Median	1.312	1.1081	15.336	4	0	Median	0.70825	0.8806	25.596	6	0	Median	1.0668	1.0791	17.279	5	2	Median	0.91901	1.0323	44.11	5	3	Median	2416500000	1314500000	1102100000	550250000	322730000	227520000	607530000	321260000	286280000	752700000	388750000	363950000	506040000	281730000	224300000	27126	5722	25697	170024;170025;170026;170027;170028;170029;170030;170031;170032;170033;170034;170035;170036;170037;170038;170039;170040;170041;170042;170043;170044	230104;230105;230106;230107;230108;230109;230110;230111;230112;230113;230114;230115;230116;230117;230118;230119;230120;230121;230122;230123;230124;230125;230126;230127;230128;230129;230130;230131	230114			28	
KEELVPSEEDFQGITPGAQGPSSR	1	Unmodified	2557.2296	0.22962518	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		63.779	63.009	3	1.3512E-05	54954	160511_QHF_FH_JSI11i_2	58.418	51.466			0.83264	0.78463	27.032	3	2	Median	1.1949	1.0034	NaN	1	0	Median	0.47012	0.58476	NaN	1	1	Median	0.83264	0.78463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69326000	42097000	27229000	22702000	10420000	12282000	30328000	23562000	6766500	16296000	8115700	8179900	0	0	0	27127	482	25698	170045;170046;170047	230132;230133;230134	230133			2	
KEEMPATK	2	Unmodified	932.46372	0.46371763	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.3175	6.8945	2	0.021308	4719	160511_QHF_FH_JSI12i_2	45.335	27.774			0.89834	1.054	16.679	4	1	Median	1.3176	1.1627	NaN	1	0	Median	0.91858	1.1247	NaN	1	0	Median	0.78979	0.80481	NaN	1	1	Median	0.87855	0.98772	NaN	1	0	Median	130340000	70313000	60025000	27762000	12520000	15242000	31792000	19365000	12427000	34436000	18878000	15559000	36348000	19550000	16797000	27128	1684	25699	170048;170049;170050;170051	230135;230136	230135			2	
KEENLADWYSQVITK	2	Unmodified	1822.9101	0.91012895	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	76.327	75.665	2;3	2.0978E-05	66400	160511_QHF_FH_JSI11i_2	89.358	84.491			0.92726	0.93079	9.3841	11	0	Median	1.1749	1.0018	12.274	2	0	Median	0.74733	0.92092	3.3858	2	0	Median	0.92726	0.93079	15.35	3	0	Median	0.89089	0.94427	6.8714	4	0	Median	1679700000	949640000	730070000	141330000	65355000	75978000	251400000	134740000	116660000	569030000	312440000	256600000	717940000	437110000	280840000	27129	878	25700	170052;170053;170054;170055;170056;170057;170058;170059;170060;170061;170062	230137;230138;230139;230140;230141;230142;230143;230144;230145;230146;230147;230148;230149;230150;230151	230143			14	
KEEPSNNVK	2	Unmodified	1043.5247	0.52473799	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.39	2	8	1				2			2	2	5	4	4.7978	3.383	2;3	6.333E-07	2363	160511_QHF_FH_JSI10i_2	137.69	111.8			0.9912	1.01	19.492	13	0	Median	1.4979	1.2833	6.7224	2	0	Median	0.60694	0.7511	14.624	2	0	Median	0.9912	1.01	9.1888	5	0	Median	1.183	1.2381	16.514	4	0	Linear	3300200000	1688900000	1611300000	488200000	210000000	278200000	696950000	448200000	248760000	1170000000	591720000	578230000	945080000	438930000	506150000	27130	2585	25701	170063;170064;170065;170066;170067;170068;170069;170070;170071;170072;170073;170074;170075	230152;230153;230154;230155;230156;230157;230158;230159;230160;230161;230162;230163;230164;230165;230166;230167;230168	230166			17	
KEESEESDDDMGFGLFD	1	Unmodified	1948.752	0.7520329	836;835	P05387;P05386	RPLP2;RPLP1	60S acidic ribosomal protein P2;60S acidic ribosomal protein P1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.35	0.478	80	44								21	33	35	35	85.399	84.932	2	1.3907E-15	73213	160511_QHF_FH_JSI12i_1	161.48	152.97			0.94052	0.89544	20.824	87	36	Median	1.0144	0.85188	11.741	13	4	Median	0.71947	0.83333	17.832	23	10	Median	0.92957	0.8889	23.021	25	11	Median	1.0078	1.0594	16.902	26	11	Median	2593900000	1390000000	1204000000	223910000	111740000	112170000	775270000	463020000	312250000	808610000	412870000	395730000	786160000	402340000	383820000	27131	836;835	25702	170076;170077;170078;170079;170080;170081;170082;170083;170084;170085;170086;170087;170088;170089;170090;170091;170092;170093;170094;170095;170096;170097;170098;170099;170100;170101;170102;170103;170104;170105;170106;170107;170108;170109;170110;170111;170112;170113;170114;170115;170116;170117;170118;170119;170120;170121;170122;170123;170124;170125;170126;170127;170128;170129;170130;170131;170132;170133;170134;170135;170136;170137;170138;170139;170140;170141;170142;170143;170144;170145;170146;170147;170148;170149;170150;170151;170152;170153;170154;170155;170156;170157;170158;170159;170160;170161;170162;170163;170164;170165;170166;170167;170168;170169;170170;170171;170172;170173;170174;170175;170176;170177;170178;170179;170180;170181;170182;170183;170184;170185;170186;170187;170188;170189;170190;170191;170192;170193;170194;170195;170196;170197;170198;170199	230169;230170;230171;230172;230173;230174;230175;230176;230177;230178;230179;230180;230181;230182;230183;230184;230185;230186;230187;230188;230189;230190;230191;230192;230193;230194;230195;230196;230197;230198;230199;230200;230201;230202;230203;230204;230205;230206;230207;230208;230209;230210;230211;230212;230213;230214;230215;230216;230217;230218;230219;230220;230221;230222;230223;230224;230225;230226;230227;230228;230229;230230;230231;230232;230233;230234;230235;230236;230237;230238;230239;230240;230241;230242;230243;230244;230245;230246;230247;230248;230249;230250;230251;230252;230253;230254;230255;230256;230257;230258;230259;230260;230261;230262;230263;230264;230265;230266;230267;230268;230269;230270;230271;230272;230273;230274;230275;230276;230277;230278;230279;230280;230281;230282;230283;230284;230285;230286;230287;230288;230289;230290;230291;230292;230293;230294;230295;230296;230297;230298;230299;230300;230301;230302;230303;230304;230305;230306;230307;230308;230309;230310;230311;230312;230313;230314;230315;230316;230317;230318;230319;230320;230321;230322;230323;230324;230325;230326;230327;230328;230329;230330;230331;230332;230333;230334;230335;230336;230337;230338;230339;230340;230341;230342;230343;230344;230345;230346;230347;230348;230349;230350;230351;230352;230353;230354;230355;230356;230357;230358;230359;230360;230361;230362;230363;230364;230365;230366;230367;230368;230369;230370;230371	230231			203	
KEESEESDDDMGFGLFD	1	Oxidation (M)	1964.7469	0.74694752	836;835	P05387;P05386	RPLP2;RPLP1	60S acidic ribosomal protein P2;60S acidic ribosomal protein P1	no	no	0	0	1	1		By MS/MS		By MS/MS	1	0	9										5		4	67.439	67.003	2	0.0018001	60692	160511_QHF_FH_JSI10i_1	81.494	78.172			1.0167	1.0337	38.185	5	4	Median	NaN	NaN	NaN	0	0	Median	0.99881	1.1379	50.691	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0179	1.0195	1.9519	2	2	Median	96165000	49218000	46947000	0	0	0	62854000	29274000	33580000	0	0	0	33311000	19944000	13367000	27132	836;835	25702	170200;170201;170202;170203;170204;170205;170206;170207;170208	230372;230373;230374;230375;230376;230377;230378;230379;230380	230380		353	8	
KEESTAASETTEGSQGDSKNAKK	4	2 Acetyl (K)	2466.1358	0.13578438	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	3		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	20.893	13.594	3	1.6723E-07	8619	160513_QHF_FH_JSI10Kac_3	82.593	73.626			0.81779	0.96969	15.111	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81779	0.96969	NaN	1	0	Median	0.80186	0.76377	NaN	1	0	Median	0.93954	1.0104	NaN	1	0	Median	19651000	9831000	9820400	0	0	0	8997400	4722500	4274900	4572600	2420500	2152100	6081500	2688000	3393400	27133	3886	25703	170209;170210;170211	230381;230382;230383	230382	2974;2975;2976		3	
KEESTAASETTEGSQGDSKNAKKK	5	3 Acetyl (K)	2636.2413	0.24131208	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	3	0	0	4		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						6	2				2	2	4	25.749	18.231	3;4	1.4037E-18	11113	160513_QHF_FH_JSI12Kac_3	109.41	99.823			1.0254	1.0399	17.691	8	0	Median	NaN	NaN	NaN	0	0	Median	0.7477	0.89658	5.3827	2	0	Median	1.0495	1.0399	1.5144	2	0	Median	1.0648	1.1557	23.283	4	0	Median	246190000	122760000	123430000	0	0	0	71127000	37322000	33805000	61295000	25546000	35749000	113770000	59889000	53879000	27134	3886	25704	170212;170213;170214;170215;170216;170217;170218;170219	230384;230385;230386;230387;230388;230389;230390;230391;230392;230393;230394	230389	2974;2975;2976;2977		11	
KEETQPPVALK	2	Unmodified	1238.6871	0.68705229	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	6	9	6							3	5	6	7	23.362	22.717	2;3	1.3631E-13	18747	160511_QHF_FH_JSI11i_2	153.12	123.65			1.0348	1.1014	34.206	18	3	Median	1.3084	1.1153	3.0535	3	0	Median	0.94761	1.1719	44.593	4	2	Median	1.1197	1.0834	12.975	5	0	Median	0.95625	1.0291	45.903	6	1	Median	4073400000	1951600000	2121800000	734220000	306890000	427330000	723050000	340080000	382970000	1449800000	650170000	799630000	1166300000	654450000	511830000	27135	3609	25705	170220;170221;170222;170223;170224;170225;170226;170227;170228;170229;170230;170231;170232;170233;170234;170235;170236;170237;170238;170239;170240	230395;230396;230397;230398;230399;230400;230401;230402;230403;230404;230405;230406;230407;230408;230409;230410;230411;230412;230413;230414;230415;230416;230417;230418;230419;230420;230421;230422;230423;230424;230425;230426;230427;230428	230419			34	
KEETQPPVALKK	3	Unmodified	1366.782	0.78201531	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.81	0.39		3	13							3	5	4	4	17.295	16.938	2;3;4	0.00020005	13829	160511_QHF_FH_JSI11i_3	78.324	64.645			0.67315	0.66855	34.341	8	8	Median	1.0705	0.91175	NaN	1	1	Median	0.89269	1.0283	61.069	2	2	Median	0.72237	0.68066	4.9218	2	2	Median	0.54865	0.55382	10.854	3	3	Plateau	5158800000	2795100000	2363700000	171240000	74448000	96793000	637550000	347160000	290390000	2124500000	1173600000	950930000	2225500000	1199900000	1025600000	27136	3609	25706	170241;170242;170243;170244;170245;170246;170247;170248;170249;170250;170251;170252;170253;170254;170255;170256	230429;230430;230431;230432;230433;230434;230435;230436;230437;230438;230439;230440;230441;230442;230443;230444;230445;230446;230447;230448	230433			20	
KEFLHAQEEVK	2	Acetyl (K)	1398.7143	0.71432967	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		44.44	34.116	3	0.0014903	19354	160513_QHF_FH_JSI11Kac_5	69.864	54.324			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27137	1567	25707	170257	230449	230449	1581		1	
KEFSPFGTITSAK	2	Acetyl (K)	1453.7453	0.74529545	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	1	0	0	1		By matching	By MS/MS		14.5	0.5							2	2			2	2		77.595	67.005	2	0.00016867	35899	160513_QHF_FH_JSI11Kac_4	99.522	64.99			0.47788	0.51766	77.262	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86666	1.0373	10.832	2	0	Median	0.27977	0.27338	2.8313	2	0	Median	NaN	NaN	NaN	0	0	Median	25661000	17677000	7983300	0	0	0	6811400	3671000	3140400	18849000	14006000	4842800	0	0	0	27138	1009	25708	170258;170259;170260;170261	230450;230451	230450	808		2	
KEGDLIAAQAR	1	Unmodified	1170.6357	0.63568542	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	17.923	17.961	2;3	0.0033047	14527	160511_QHF_FH_JSI12i_3	46.592	31.034			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27139	791	25709	170262;170263	230452;230453	230453			2	
KEGGLGPLNIPLLADVTR	1	Unmodified	1862.0625	0.062547262	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		100.82	100.73	3	0.0080537	83392	160511_QHF_FH_JSI10i_3	42.639	31.695			0.43308	0.44127	26.574	2	1	Median	NaN	NaN	NaN	0	0	Median	0.32686	0.36568	NaN	1	1	Median	0.57382	0.53249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	234280000	157190000	77084000	0	0	0	135140000	107040000	28105000	99136000	50157000	48979000	0	0	0	27140	1390	25710	170264;170265	230454;230455	230455			1	
KEGGTVVYGGK	2	Unmodified	1093.5768	0.57677356	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1	By matching			By MS/MS	2.5	0.5		1	1							1			1	9.6573	9.448	3	0.0018346	6842	160511_QHF_FH_JSI12i_3	39.179	34.484			0.86447	0.7939	23.832	2	0	Median	0.79822	0.67078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93623	0.93963	NaN	1	0	Median	116620000	66860000	49755000	22970000	11745000	11225000	0	0	0	0	0	0	93645000	55115000	38530000	27141	1659	25711	170266;170267	230456	230456			1	
KEGKPTIVEEDDPELFK	3	Unmodified	1972.9993	0.99933788	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		48.56	48.56	3;4	1.6858E-05	42868	160511_QHF_FH_JSI11i_3	84.559	66.642			0.98929	0.93347	14.71	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98929	0.93347	14.71	2	0	Median	NaN	NaN	NaN	0	0	Median	206910000	116920000	89989000	0	0	0	0	0	0	206910000	116920000	89989000	0	0	0	27142	587	25712	170268;170269	230457;230458;230459	230459			3	
KEGPTLSVPMVQGECLLK	2	Unmodified	1985.0326	0.032569042	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	75.7	75.51	3	7.2753E-05	67363	160511_QHF_FH_JSI11i_3	45.422	36.325			0.99658	0.97548	32.007	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68817	0.62482	NaN	1	0	Median	1.0972	1.0649	12.402	2	2	Median	128820000	65452000	63368000	0	0	0	0	0	0	40554000	22579000	17975000	88265000	42873000	45393000	27143	4348	25713	170270;170271;170272	230460;230461;230462	230460			3	
KEGPYDVVVLPGGNLGAQNLSESAAVK	2	Unmodified	2711.413	0.41300928	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	78.788	78.203	3	2.9617E-14	69724	160511_QHF_FH_JSI11i_3	90.974	88.212			0.95846	0.84363	10.203	6	1	Linear	1.1545	1.0057	NaN	1	0	Median	0.80352	0.96766	NaN	1	0	Median	1.002	0.96502	5.204	2	0	Median	0.84691	0.90479	20.131	2	1	Median	519960000	269160000	250790000	56862000	26619000	30243000	75126000	39640000	35486000	173410000	82130000	91279000	214560000	120780000	93786000	27144	4276	25714	170273;170274;170275;170276;170277;170278	230463;230464;230465;230466;230467;230468	230463			6	
KEGSDGPLATSKPVPAEK	3	Unmodified	1809.9472	0.94724273	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	2		By MS/MS	By MS/MS		2.8	0.4		1	4								3	2		21.385	20.734	3;4	1.6839E-06	17338	160511_QHF_FH_JSI11i_3	100.02	76.603			0.80153	0.99881	6.7319	5	1	Median	NaN	NaN	NaN	0	0	Median	0.8002	0.92197	4.8388	3	1	Median	1.0941	1.0493	1.4138	2	0	Median	NaN	NaN	NaN	0	0	Median	652820000	283840000	368980000	0	0	0	230370000	119370000	111000000	422450000	164470000	257980000	0	0	0	27145	899	25715	170279;170280;170281;170282;170283	230469;230470;230471;230472;230473;230474;230475;230476;230477;230478	230470			10	
KEHDPVGQMVNNPK	2	Acetyl (K)	1633.7882	0.78823967	1844	P55060	CSE1L	Exportin-2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		37.616	28.168	3	0.0067635	17151	160513_QHF_FH_JSI11Kac_4	52.5	45.919			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3305300	3305300	0	0	0	0	0	0	0	3305300	3305300	0	0	0	0	27146	1844	25716	170284	230479	230479	1851		1	
KEIEESK	2	Unmodified	861.44436	0.4443624	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	5.0277	4.4565	2	0.026869	2442	160511_QHF_FH_JSI12i_2	66.351	5.8735			0.64697	0.70151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64697	0.70151	NaN	1	1	Median	80943000	53369000	27575000	0	0	0	0	0	0	0	0	0	80943000	53369000	27575000	27147	4334	25717	170285	230480	230480			1	
KELGDSPK	2	Unmodified	872.46035	0.46034682	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	1	By MS/MS	By matching			1.33	0.471	2	1								2	1			7.7937	7.339	3	0.054924	5200	160511_QHF_FH_JSI9i_2	16.203	2.8495			0.88748	0.7575	32.531	3	0	Median	1.192	0.99495	38.561	2	0	Median	0.6297	0.73171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	381080000	198110000	182970000	226860000	99300000	127560000	154210000	98809000	55405000	0	0	0	0	0	0	27148	2099	25718	170286;170287;170288	230481	230481			1	
KEMQPTHPIR	1	Acetyl (K);Oxidation (M)	1293.65	0.64995528	2051;1384;1288	P27348;P31946;P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	no	no	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								6		1	2	2	1	14.533	5.1262	2;3	0.00017399	5232	160513_QHF_FH_JSI10Kac_5	97.911	74.994			0.75541	0.74894	54.517	6	0	Median	1.0149	0.84595	NaN	1	0	Median	0.97348	1.1373	2.8879	2	0	Median	0.35208	0.3463	0.17679	2	0	Median	0.60562	0.66306	NaN	1	0	Median	79386000	53055000	26331000	6229800	2656700	3573100	15747000	8169700	7577100	45500000	34455000	11045000	11909000	7773200	4135800	27149	1288;1384;2051	25719	170289;170290;170291;170292;170293;170294	230482;230483;230484;230485;230486;230487	230487	1212	925	6	
KEMQPTHPIR	1	Acetyl (K)	1277.655	0.65504065	2051;1384;1288	P27348;P31946;P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	4	1	2	26.059	17.408	2;3	2.5431E-05	10065	160513_QHF_FH_JSI10Kac_5	111.86	87.001			0.97882	1.0995	170.01	9	3	Median	4.5373	3.8154	203.91	2	1	Median	0.95718	1.1309	183.82	4	1	Median	0.35954	0.35436	NaN	1	0	Median	2.7563	3.0139	213.38	2	1	Median	163910000	87901000	76011000	19599000	7175600	12424000	60061000	20801000	39260000	68542000	52162000	16380000	15710000	7761800	7948200	27150	1288;1384;2051	25719	170295;170296;170297;170298;170299;170300;170301;170302;170303	230488;230489;230490;230491;230492;230493;230494;230495	230491	1212		8	
KENPLQFK	2	Unmodified	1002.5498	0.54983053	1426;1073	P15311;P35241	EZR;RDX	Ezrin;Radixin	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	2	3	23.815	23.553	2;3	0.0036213	19382	160511_QHF_FH_JSI12i_3	94.302	49.855			1.001	1.0414	33.621	5	3	Median	NaN	NaN	NaN	0	0	Median	0.93057	1.066	NaN	1	1	Median	1.0529	0.99144	6.959	2	0	Median	1.1578	1.1742	64.698	2	2	Median	843280000	476060000	367220000	0	0	0	46970000	30208000	16762000	286920000	169760000	117160000	509390000	276100000	233290000	27151	1073;1426	25720	170304;170305;170306;170307;170308;170309;170310	230496;230497;230498;230499;230500;230501;230502;230503;230504	230503			9	
KEPAVLELEGK	2	Unmodified	1211.6762	0.67615325	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.79		8	4					5		2	4	6	5	42.288	39.072	2;3	1.0899E-05	34178	160511_QHF_FH_JSI9i_2	81.92	71.915			0.88997	0.94193	21.248	15	1	Median	0.88362	0.75236	2.2996	2	0	Median	0.78969	0.97705	30.519	4	1	Median	0.92475	0.94193	16.83	5	0	Median	0.98372	1.0255	19.412	4	0	Median	4932900000	2556500000	2376400000	364870000	199320000	165550000	510830000	282800000	228020000	1668800000	803360000	865460000	2388400000	1271000000	1117300000	27152	2169	25721	170311;170312;170313;170314;170315;170316;170317;170318;170319;170320;170321;170322;170323;170324;170325;170326;170327	230505;230506;230507;230508;230509;230510;230511;230512;230513;230514;230515;230516;230517;230518;230519;230520;230521;230522;230523;230524;230525;230526;230527;230528;230529;230530;230531;230532	230513			28	
KEPAVLELEGKK	3	Unmodified	1339.7711	0.77111627	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	29.823	29.769	3	0.0027525	25021	160511_QHF_FH_JSI12i_3	64.65	52.735			2.3729	2.3927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3729	2.3927	NaN	1	1	Median	107220000	47298000	59922000	0	0	0	0	0	0	0	0	0	107220000	47298000	59922000	27153	2169	25722	170328	230533	230533			1	
KEPFELEAFYTNLHEVPYPDAR	1	Unmodified	2664.286	0.28601785	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	90.521	90.456	3;4	0.0027123	78543	160511_QHF_FH_JSI12i_3	38.933	31.901			0.92626	0.95301	56.971	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92626	0.95301	56.971	2	2	Median	75416000	45341000	30075000	0	0	0	0	0	0	0	0	0	75416000	45341000	30075000	27154	723	25723	170329;170330	230534;230535	230535			2	
KEPFTLEAYYSSPQDLPYPDPAIAQFSVQK	2	Unmodified	3428.6816	0.68163914	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.87	100.89	3	8.4147E-32	87496	160511_QHF_FH_JSI12i_3	127.59	116.58			1.0001	1.0363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0001	1.0363	NaN	1	0	Median	183510000	88832000	94679000	0	0	0	0	0	0	0	0	0	183510000	88832000	94679000	27155	1417	25724	170331	230536;230537	230537			2	
KEPGDTVHK	2	Unmodified	1009.5193	0.51925868	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	4.9135	4.9597	2	0.00041116	2506	160511_QHF_FH_JSI12i_3	81.338	54.736			0.90578	0.88465	22.283	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1005	1.0356	NaN	1	0	Median	0.74554	0.75569	NaN	1	0	Median	113120000	64833000	48287000	0	0	0	0	0	0	37711000	21436000	16274000	75409000	43396000	32013000	27156	5070	25725	170332;170333	230538;230539	230539			2	
KEPGYIR	1	Unmodified	861.47085	0.47085192	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		9.4975	9.2034	2	0.045398	6856	160511_QHF_FH_JSI11i_3	45.081	13.792			0.93843	0.97419	8.0823	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79425	0.92007	NaN	1	0	Median	1.1088	1.0315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146180000	76343000	69834000	0	0	0	42392000	22275000	20117000	103780000	54068000	49717000	0	0	0	27157	598	25726	170334;170335	230540	230540			1	
KEPLETLK	2	Unmodified	956.55425	0.5542472	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	19.539	19.552	2;3	0.018219	15832	160511_QHF_FH_JSI12i_3	48.157	20.421			1.0284	1.0482	5.169	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0284	1.0482	5.169	2	0	Median	182950000	101030000	81921000	0	0	0	0	0	0	0	0	0	182950000	101030000	81921000	27158	2985	25727	170336;170337	230541;230542	230541			1	
KEPLFGISTGNLITGLAAGAK	2	Unmodified	2057.1521	0.15209055	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	95.032	94.71	3	7.057E-06	84235	160511_QHF_FH_JSI11i_3	66.045	59.628			0.64636	0.68026	36.37	3	0	Median	0.95858	0.77846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43407	0.39185	NaN	1	0	Median	0.64636	0.68026	NaN	1	0	Median	137950000	81967000	55988000	26579000	12197000	14382000	0	0	0	52273000	32193000	20081000	59103000	37577000	21526000	27159	1372	25728	170338;170339;170340	230543;230544;230545;230546;230547;230548	230543			6	
KEPMEALNTAQGAR	1	Unmodified	1514.7511	0.75112588	3120	Q6PI78	TMEM65	Transmembrane protein 65	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	25.65	25.432	2;3	1.6739E-05	21727	160511_QHF_FH_JSI11i_3	94.09	83.737			1.0518	0.96393	16.048	5	0	Median	1.0905	0.91669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1616	1.0708	14.869	2	0	Median	0.90973	0.90876	22.29	2	0	Median	241350000	121960000	119390000	49935000	25121000	24813000	0	0	0	127950000	62858000	65094000	63464000	33980000	29484000	27160	3120	25729	170341;170342;170343;170344;170345	230549;230550;230551	230549			3	
KEPPKPPLNNFK	3	Unmodified	1407.7874	0.78743503	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			28.586	27.261	3	0.008287	22576	160511_QHF_FH_JSI10i_3	47.288	38.775			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27161	5481	25730	170346	230552	230552			1	
KEPPLTPVPLK	2	Unmodified	1217.7384	0.73835958	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	43.361	43.129	3	0.0030337	36697	160511_QHF_FH_JSI12i_3	48.044	41.071			1.1857	1.199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1857	1.199	NaN	1	1	Median	84814000	37200000	47614000	0	0	0	0	0	0	0	0	0	84814000	37200000	47614000	27162	940	25731	170347;170348	230553;230554	230554			2	
KEPVTTR	1	Unmodified	829.46577	0.46576654	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	1		By MS/MS			3	0			1								1			4.8278	4.3508	2	0.042747	2430	160511_QHF_FH_JSI10i_3	46.37	10.185		+	0.81746	0.91761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81746	0.91761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140050000	75648000	64399000	0	0	0	140050000	75648000	64399000	0	0	0	0	0	0	27163	65	25732	170349	230555	230555			1	
KEPVYLSGYGVELAIK	2	Unmodified	1764.9662	0.96618726	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.257	74.973	2	0.016874	65059	160511_QHF_FH_JSI12i_3	56.225	46.792			0.92666	0.94389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92666	0.94389	NaN	1	1	Median	33412000	15900000	17512000	0	0	0	0	0	0	0	0	0	33412000	15900000	17512000	27164	5135	25733	170350	230556	230556			1	
KEQALQLAQK	2	Unmodified	1155.6612	0.66117189	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	16.764	16.815	3	0.021366	13488	160511_QHF_FH_JSI12i_3	30.824	18.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27165	5223	25734	170351	230557	230557			1	
KEQEELK	2	Unmodified	902.47091	0.4709115	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1		By MS/MS		By matching	2	0		2									1		1	5.1312	4.6421	2	0.052323	2703	160511_QHF_FH_JSI10i_2	42.599	7.3034			0.9777	1.1556	33.754	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74429	0.91021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2843	1.4671	NaN	1	0	Median	98060000	47183000	50877000	0	0	0	44605000	23694000	20911000	0	0	0	53456000	23490000	29966000	27166	238	25735	170352;170353	230558	230558			1	
KEQEKRMEK	3	Oxidation (M)	1220.6183	0.6183208	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	1	3	By MS/MS				15	0								1		1				64.592	53.912	2	0.060454	28353	160513_QHF_FH_JSI9Kac_5	31.074	8.3336			0.025584	0.021524	NaN	1	1	Median	0.025584	0.021524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53579000	52501000	1078400	53579000	52501000	1078400	0	0	0	0	0	0	0	0	0	27167	4632	25736	170354	230559	230559			1	
KEQWYAGINPSDGINSEVLEAIR	1	Unmodified	2588.2871	0.28708048	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	99.591	99.61	4	0.057941	85869	160511_QHF_FH_JSI12i_3	12.677	5.4841			7.8594	8.0831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.8594	8.0831	NaN	1	1	Median	207370000	16585000	190790000	0	0	0	0	0	0	0	0	0	207370000	16585000	190790000	27168	3411	25737	170355	230560	230560			1	
KESDLNGAQIK	2	Unmodified	1201.6303	0.63026569	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	13.502	13.066	2;3	0.00027844	10415	160511_QHF_FH_JSI12i_2	77.677	30.48			1.014	1.0521	8.8352	10	0	Median	1.2058	1.015	2.4017	2	0	Median	0.89427	1.0889	3.7244	2	0	Median	1.0489	1.0628	10.145	2	0	Median	1.014	1.0649	13.199	4	0	Median	637120000	336790000	300330000	114010000	60727000	53288000	98135000	58056000	40079000	196150000	93582000	102570000	228810000	124420000	104390000	27169	1180	25738	170356;170357;170358;170359;170360;170361;170362;170363;170364;170365	230561;230562;230563;230564;230565;230566;230567;230568;230569;230570;230571;230572;230573;230574;230575	230562			15	
KESEAVEWQQK	2	Unmodified	1360.6623	0.6622941	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							3	2	4	4	17.749	17.304	2;3	3.6725E-05	13587	160511_QHF_FH_JSI12i_3	83.397	71.864			0.9476	0.97191	18.653	11	2	Median	1.1263	0.96649	NaN	1	0	Median	0.77695	0.95274	19.845	2	0	Median	0.94342	0.91999	12.573	4	0	Linear	0.93517	0.95641	28.414	4	2	Median	1252200000	659590000	592560000	55750000	21410000	34340000	148910000	85274000	63636000	477910000	254380000	223520000	569580000	298520000	271060000	27170	1270	25739	170366;170367;170368;170369;170370;170371;170372;170373;170374;170375;170376;170377;170378	230576;230577;230578;230579;230580;230581;230582;230583;230584;230585;230586;230587;230588;230589;230590;230591;230592;230593;230594	230593			19	
KESNLETELK	2	Unmodified	1189.619	0.6190323	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		26.476	26.117	3	0.047643	21826	160511_QHF_FH_JSI11i_2	15.89	2.9337			2.1822	2.1636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1822	2.1636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	206820000	54288000	152530000	0	0	0	0	0	0	206820000	54288000	152530000	0	0	0	27171	2414	25740	170379	230595	230595			1	
KESYSIYVYK	2	Unmodified	1278.6496	0.64960415	1235	Q16778;P23527;P06899;Q8N257;P33778;Q6DRA6;Q6DN03	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	43.751	37.762	2;3	0.0015075	20871	160513_QHF_FH_JSI10Kac_6	58.676	36.445			1.2894	1.6133	16.856	3	1	Plateau	1.9226	1.6133	NaN	1	1	Median	1.5485	1.8386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2894	1.3159	NaN	1	0	Median	54706000	21126000	33579000	7053400	1891300	5162100	10790000	3844500	6945600	0	0	0	36862000	15391000	21472000	27172	1235	25741	170380;170381;170382;170383;170384	230596;230597;230598;230599;230600	230600			5	
KESYSVYVYK	2	Unmodified	1264.634	0.63395408	1902;2915	Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			3						9	2	2	4	4	38.407	31.726	2;3	0.00020793	17763	160513_QHF_FH_JSI10Kac_6	73.781	55.917			0.98124	1.0438	32.408	11	1	Median	1.3435	1.1447	13.155	2	0	Median	0.9333	1.1077	8.4005	2	0	Median	0.46135	0.44363	47.573	3	1	Plateau	1.1007	1.1658	22.172	4	0	Median	355680000	163910000	191770000	16988000	6632900	10355000	23641000	11852000	11789000	83943000	51160000	32783000	231110000	94266000	136840000	27173	1902;2915	25742	170385;170386;170387;170388;170389;170390;170391;170392;170393;170394;170395;170396	230601;230602;230603;230604;230605;230606;230607;230608;230609;230610	230610			9	
KETEGDVTSVK	2	Unmodified	1191.5983	0.59829686	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	3.45	4	7					1			2	2	4	4	10.041	9.0194	2;3	0.0001753	6915	160511_QHF_FH_JSI12i_2	82.417	57.494			0.92607	0.94861	28.76	10	6	Median	1.2507	1.0894	32.011	2	1	Median	0.88179	1.0509	15.712	2	1	Median	0.95927	0.95427	40.994	2	1	Median	0.88169	0.94124	36.795	4	3	Median	455170000	222270000	232900000	109630000	49789000	59844000	88192000	51035000	37157000	133430000	57223000	76210000	123910000	64223000	59691000	27174	1721	25743	170397;170398;170399;170400;170401;170402;170403;170404;170405;170406;170407;170408	230611;230612;230613;230614;230615;230616;230617;230618;230619;230620;230621;230622;230623	230612			13	
KETESEAEDNLDDLEK	2	Unmodified	1863.8222	0.82216138	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.549	35.245	2	3.555E-10	31545	160511_QHF_FH_JSI11i_1	167.88	144.97			0.77845	0.83008	37.029	2	0	Median	NaN	NaN	NaN	0	0	Median	0.5495	0.63886	NaN	1	0	Median	1.1028	1.0785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106800000	57509000	49290000	0	0	0	49700000	30933000	18767000	57098000	26575000	30522000	0	0	0	27175	3463	25744	170409;170410;170411;170412	230624;230625;230626;230627;230628	230624			5	
KETLLAMFK	2	Unmodified	1079.6049	0.60490256	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	59.881	59.054	2;3	0.0003281	48717	160511_QHF_FH_JSI9i_3	61.65	53.725			1.0534	1.0245	17.186	8	0	Median	1.4104	1.127	1.7525	2	0	Median	0.64978	0.75148	1.632	2	0	Median	1.0008	0.93615	8.655	2	0	Median	1.0605	1.0744	2.6187	2	0	Median	1180500000	561210000	619260000	371200000	151060000	220140000	187790000	120740000	67055000	211890000	104280000	107610000	409590000	185130000	224460000	27176	1282	25745	170413;170414;170415;170416;170417;170418;170419;170420	230629;230630;230631;230632;230633;230634;230635;230636;230637;230638;230639;230640;230641;230642	230637			14	
KETRYSYNTEWRSEIINSKNFDR	2	2 Acetyl (K)	3019.4424	0.44241193	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	2	0	0	4		By MS/MS			16	0									1		1			94.018	88.297	3	0.036976	50732	160513_QHF_FH_JSI10Kac_6	31.36	6.8116			0.7485	0.8723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7485	0.8723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106480000	61355000	45127000	0	0	0	106480000	61355000	45127000	0	0	0	0	0	0	27177	4423	25746	170421	230643	230643			1	
KETSNLYK	2	Unmodified	981.51311	0.51311067	4336;500	O75323;Q9BPW8	GBAS;NIPSNAP1	Protein NipSnap homolog 2;Protein NipSnap homolog 1	no	no	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			6								1	2	3	6.9151	6.8772	2;3	0.0010366	4437	160511_QHF_FH_JSI12i_3	61.679	38.25			1.06	1.0437	24.36	6	0	Median	NaN	NaN	NaN	0	0	Median	1.4059	1.5636	NaN	1	0	Median	1.2338	1.1761	5.6187	2	0	Median	0.89242	0.9031	8.2199	3	0	Plateau	1991000000	1022200000	968810000	0	0	0	20272000	8455900	11816000	588220000	263010000	325210000	1382500000	750720000	631780000	27178	500;4336	25747	170422;170423;170424;170425;170426;170427	230644;230645;230646;230647;230648	230648			5	
KEVQDEEK	2	Unmodified	1003.4822	0.48220447	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	1.2	0.4	4	1								2	1	1	1	4.6241	4.2941	2	0.0036533	2096	160511_QHF_FH_JSI9i_1	71.379	16.768			1.2637	1.096	31.165	5	1	Median	1.1459	0.96427	18.108	2	0	Median	1.4899	1.7528	NaN	1	1	Median	1.3729	1.3505	NaN	1	0	Median	0.81134	0.85019	NaN	1	0	Median	727980000	347660000	380320000	207660000	103330000	104330000	145790000	59713000	86073000	174860000	73784000	101080000	199670000	110840000	88835000	27179	1080	25748	170428;170429;170430;170431;170432	230649;230650	230650			2	
KEVTEEEK	2	Unmodified	990.48696	0.4869555	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	4.8878	4.5051	2;3	0.0028119	2403	160511_QHF_FH_JSI11i_2	61.78	13.356			1.1144	1.1573	66.478	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8458	1.8519	NaN	1	1	Median	0.67276	0.72329	NaN	1	0	Median	200730000	89683000	111050000	0	0	0	0	0	0	118950000	45742000	73207000	81785000	43941000	37843000	27180	2438	25749	170433;170434	230651;230652;230653	230653			3	
KEVVEEAENGR	1	Unmodified	1258.6153	0.61534391	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		9.3259	9.0224	2	1.7043E-05	6859	160511_QHF_FH_JSI9i_2	104.79	81.366			0.64433	0.92091	9.5794	4	1	Linear	1.116	0.94499	NaN	1	0	Median	0.64302	0.77634	NaN	1	0	Median	0.9708	0.92653	4.5101	2	1	Median	NaN	NaN	NaN	0	0	Median	286870000	151380000	135490000	50840000	21561000	29279000	65182000	38874000	26308000	170850000	90942000	79905000	0	0	0	27181	849	25750	170435;170436;170437;170438	230654;230655;230656;230657;230658;230659	230655			6	
KEYNALHQR	1	Acetyl (K)	1199.6047	0.60471964	404	O60271;Q9UPT6	SPAG9;MAPK8IP3	C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3	yes	no	1	0	0	1			By MS/MS		16	0									1			1		20.297	11.141	3	0.0068069	7804	160513_QHF_FH_JSI11Kac_6	57.174	37.412			0.069025	0.068083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.069025	0.068083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3900700	3710900	189810	0	0	0	0	0	0	3900700	3710900	189810	0	0	0	27182	404	25751	170439	230660	230660	207		1	
KFAADAVK	2	Acetyl (K)	890.48617	0.48616764	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	33.483	24.45	2	0.0060481	15219	160513_QHF_FH_JSI11Kac_4	107.57	38.66			0.94877	1.0276	47.428	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0385	1.2443	NaN	1	0	Median	0.51234	0.50576	NaN	1	0	Median	0.94877	1.0276	NaN	1	0	Median	290140000	179840000	110290000	0	0	0	86275000	53070000	33206000	139150000	87553000	51597000	64712000	39220000	25492000	27183	1471	25752	170440;170441;170442;170443	230661;230662;230663;230664;230665	230663	1457;1458		5	
KFACNGTVIEHPEYGEVIQLQGDQRK	2	Acetyl (K)	3057.4978	0.49781831	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	1	0	0	2			By MS/MS		16	0									1			1		72.888	63.505	4	3.9074E-31	34436	160513_QHF_FH_JSI11Kac_6	201.63	178.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25688000	25688000	0	0	0	0	0	0	0	25688000	25688000	0	0	0	0	27184	1522	25753	170444	230666	230666	1545		1	
KFAEAFEAIPR	1	Unmodified	1277.6768	0.67682195	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	52.676	51.926	2;3	2.4913E-05	43547	160511_QHF_FH_JSI10i_3	100.72	80.393			0.78692	0.81634	18.92	9	2	Median	1.2228	1.0011	14.029	2	0	Median	0.60688	0.69887	8.2431	2	0	Median	0.90057	0.85581	21.631	3	2	Median	0.74508	0.75945	10.216	2	0	Median	2789800000	1609000000	1180900000	498100000	217970000	280130000	527860000	308980000	218880000	1553000000	956620000	596410000	210840000	125390000	85448000	27185	1721	25754	170445;170446;170447;170448;170449;170450;170451;170452;170453	230667;230668;230669;230670;230671;230672;230673;230674;230675;230676;230677;230678;230679;230680;230681;230682;230683;230684;230685;230686;230687	230675			21	
KFAEAFEAIPR	1	Acetyl (K)	1319.6874	0.68738664	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1		1	3	1	76.154	65.826	2;3	2.7732E-08	32871	160513_QHF_FH_JSI10Kac_5	122.51	102.75			0.5248	0.54363	49.672	4	1	Median	NaN	NaN	NaN	0	0	Median	0.88883	1.0451	NaN	1	0	Median	0.44246	0.42902	44.438	2	1	Median	0.44676	0.5031	NaN	1	0	Median	162260000	107610000	54655000	0	0	0	13663000	7609100	6053600	142380000	95726000	46650000	6221600	4270000	1951600	27186	1721	25754	170454;170455;170456;170457;170458	230688;230689;230690;230691	230691	1734		4	
KFAEALGSTEAK	2	Unmodified	1250.6507	0.65066678	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	23.604	22.971	2;3	0.00033705	19006	160511_QHF_FH_JSI10i_3	72.2	47.425			0.94531	1.0021	9.7519	4	1	Median	NaN	NaN	NaN	0	0	Median	0.91517	1.0735	5.847	2	0	Median	0.97808	0.88684	NaN	1	1	Median	0.93368	0.97504	NaN	1	0	Median	176590000	80846000	95747000	0	0	0	69902000	32641000	37261000	47401000	23466000	23935000	59290000	24739000	34551000	27187	2087	25755	170459;170460;170461;170462	230692;230693;230694;230695;230696	230694			5	
KFAEALGSTEAK	2	Acetyl (K)	1292.6612	0.66123147	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			47.324	37.058	2	0.0048753	20942	160513_QHF_FH_JSI10Kac_4	72.2	49.726			1.9124	2.2604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9124	2.2604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6860000	1763700	5096300	0	0	0	6860000	1763700	5096300	0	0	0	0	0	0	27188	2087	25755	170463	230697	230697	2171		1	
KFAENLK	2	Acetyl (K)	890.48617	0.48616764	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		35.403	25.583	2	0.043103	15075	160513_QHF_FH_JSI11Kac_5	95.909	28.74			0.74723	0.73624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74723	0.73624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41663000	22861000	18802000	0	0	0	0	0	0	41663000	22861000	18802000	0	0	0	27189	2770	25756	170464	230698	230698			1	
KFAEQDAK	2	Unmodified	935.47125	0.47124585	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.1544	6.25	2	0.032613	3859	160511_QHF_FH_JSI12i_3	58.433	33.539			0.49962	0.49992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49962	0.49992	NaN	1	1	Median	90156000	62040000	28116000	0	0	0	0	0	0	0	0	0	90156000	62040000	28116000	27190	2419	25757	170465	230699	230699			1	
KFAETQPK	2	Unmodified	947.50763	0.50763136	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.51		7	8						4	5	5	5	4	8.6976	6.8361	2;3	0.00066897	5637	160511_QHF_FH_JSI11i_3	70.919	37.122			0.88045	0.89182	20.289	19	0	Median	1.22	1.0527	26.334	5	0	Median	0.86708	1.0006	16.128	5	0	Median	0.82134	0.80099	4.4391	5	0	Median	0.89497	0.95171	9.4702	4	0	Median	17522000000	9938700000	7583700000	2173000000	917360000	1255700000	3995800000	2214100000	1781700000	4984500000	3192800000	1791700000	6369000000	3614400000	2754600000	27191	1284	25758	170466;170467;170468;170469;170470;170471;170472;170473;170474;170475;170476;170477;170478;170479;170480;170481;170482;170483;170484	230700;230701;230702;230703;230704;230705;230706;230707;230708;230709;230710;230711;230712;230713;230714;230715;230716;230717;230718;230719;230720	230702			20	
KFAETQPK	2	Acetyl (K)	989.5182	0.51819605	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.9	0.781						3	3	2			2	3	3	22.356	14.056	2	0.0055902	9244	160513_QHF_FH_JSI10Kac_4	108.74	76.388			0.49923	0.52319	53.404	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0277	1.2223	12.612	2	0	Median	0.39982	0.3946	5.2897	3	0	Plateau	0.5764	0.63753	NaN	1	0	Median	344410000	241240000	103170000	0	0	0	52437000	26277000	26160000	250860000	185110000	65752000	41120000	29862000	11258000	27192	1284	25758	170485;170486;170487;170488;170489;170490;170491;170492	230721;230722;230723;230724;230725;230726;230727	230721	1209		7	
KFAETQPKK	3	Unmodified	1075.6026	0.60259438	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			6.3875	5.8779	3	0.0048325	3900	160511_QHF_FH_JSI10i_3	58.37	44.163			0.91139	0.89586	10.932	2	0	Median	1.1696	0.96785	NaN	1	0	Median	0.7102	0.82922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	530820000	237580000	293240000	301460000	113190000	188260000	229360000	124380000	104980000	0	0	0	0	0	0	27193	1284	25759	170493;170494	230728;230729;230730	230729			3	
KFAMEPEEFDSDTLR	1	Unmodified	1813.8193	0.81926503	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			63.797	62.285	3	0.0015676	52160	160511_QHF_FH_JSI10i_3	60.246	49.588			0.91172	1.0566	32.71	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91172	1.0566	32.71	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60814000	28399000	32416000	0	0	0	60814000	28399000	32416000	0	0	0	0	0	0	27194	1034	25760	170495;170496	230731;230732	230732			2	
KFAPVVAPK	2	Unmodified	955.58549	0.58548775	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	26.698	26.149	2;3	4.8881E-05	21583	160511_QHF_FH_JSI12i_3	98.299	79.569			1.8864	1.6691	29.582	5	2	Median	2.0483	1.663	NaN	1	0	Median	1.4591	1.6691	NaN	1	0	Median	1.8864	1.7636	NaN	1	1	Median	1.4211	1.4308	55.92	2	1	Median	341810000	134180000	207630000	77988000	29998000	47990000	60480000	28817000	31663000	50300000	18822000	31478000	153040000	56540000	96501000	27195	3927	25761	170497;170498;170499;170500;170501	230733;230734;230735;230736;230737	230736			5	
KFAPVVAPK	2	Acetyl (K)	997.59605	0.59605244	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	53.817	43.259	2	0.057166	24657	160513_QHF_FH_JSI12Kac_4	53.166	26.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	888240	888240	0	0	0	0	0	0	0	0	0	0	888240	888240	0	27196	3927	25761	170502	230738	230738	3006		1	
KFAYGYIEDLK	2	Unmodified	1345.6918	0.69180331	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	58.502	58.241	2	0.026119	49977	160511_QHF_FH_JSI12i_3	43.282	24.537			0.82031	0.85296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82031	0.85296	NaN	1	0	Median	38505000	20531000	17974000	0	0	0	0	0	0	0	0	0	38505000	20531000	17974000	27197	1363	25762	170503	230739;230740	230739			2	
KFDDENFILK	2	Unmodified	1267.6449	0.64485312	5444	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	55.958	55.29	3	0.0027927	47887	160511_QHF_FH_JSI11i_2	46.352	37.164			1.3054	1.2954	23.99	4	0	Median	1.3938	1.1721	NaN	1	0	Median	1.0943	1.3487	NaN	1	0	Median	1.9825	1.9964	NaN	1	0	Median	1.2226	1.2443	NaN	1	0	Median	224930000	95157000	129770000	22543000	10381000	12162000	41729000	19322000	22406000	59619000	23959000	35660000	101030000	41494000	59541000	27198	5444	25763	170504;170505;170506;170507	230741;230742;230743;230744;230745	230742			5	
KFDDFQK	2	Unmodified	926.44978	0.44978213	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	18.381	18.407	2	0.02128	14816	160511_QHF_FH_JSI12i_3	60.478	60.478			0.88655	0.889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88655	0.889	NaN	1	0	Median	161080000	78054000	83031000	0	0	0	0	0	0	0	0	0	161080000	78054000	83031000	27199	2470	25764	170508	230746	230746			1	
KFDEALK	2	Unmodified	849.45962	0.45961853	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	3	5	1							3	1	3	2	17.664	17.218	2;3	0.0093358	14432	160511_QHF_FH_JSI9i_2	45.335	23.204			1.0734	1.0734	47.609	6	2	Median	1.6178	1.3198	NaN	1	0	Median	0.50866	0.61916	NaN	1	1	Median	1.8125	1.7892	44.349	2	1	Median	0.85054	0.87716	0.6473	2	0	Median	908130000	410290000	497840000	102020000	34906000	67118000	72853000	42800000	30053000	218790000	74158000	144630000	514470000	258430000	256040000	27200	897	25765	170509;170510;170511;170512;170513;170514;170515;170516;170517	230747;230748;230749;230750;230751;230752	230747			6	
KFDEGRNNFEGEVTK	2	Unmodified	1768.838	0.83802663	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.64	0.481		4	7							5	4	2		30.515	29.527	3;4	0.00011098	24886	160511_QHF_FH_JSI11i_3	77.562	66.746			1.149	1.1299	20.764	11	1	Median	1.3574	1.1749	13.824	5	0	Median	1.0183	1.1668	34.144	4	1	Median	1.1372	1.0814	6.2089	2	0	Median	NaN	NaN	NaN	0	0	Median	2612600000	1235700000	1376900000	840320000	314130000	526190000	848710000	415610000	433110000	923610000	505980000	417630000	0	0	0	27201	867	25766	170518;170519;170520;170521;170522;170523;170524;170525;170526;170527;170528	230753;230754;230755;230756;230757;230758;230759;230760;230761;230762;230763;230764;230765;230766;230767;230768;230769;230770;230771;230772;230773;230774;230775;230776	230754			24	
KFDEVLVNHFCEEFGK	2	Unmodified	1996.9353	0.93529784	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	73.101	72.466	3;4	3.0813E-22	64393	160511_QHF_FH_JSI11i_3	173.51	164.41			1.006	0.97955	15.845	5	1	Median	NaN	NaN	NaN	0	0	Median	0.8874	1.0152	5.0529	2	0	Median	1.0229	0.96715	0.24513	2	0	Median	1.3914	1.3998	NaN	1	1	Median	356610000	147110000	209490000	0	0	0	48558000	22840000	25717000	255860000	98440000	157420000	52184000	25834000	26350000	27202	1417	25767	170529;170530;170531;170532;170533	230777;230778;230779;230780;230781;230782;230783;230784;230785	230779			8	
KFDGVEGPR	1	Unmodified	1003.5087	0.50869399	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		16.925	16.64	2	0.0011026	13729	160511_QHF_FH_JSI11i_3	88.136	63.981			0.94419	0.89779	13.747	3	2	Plateau	0.83969	0.73703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94419	0.89779	10.882	2	2	Median	NaN	NaN	NaN	0	0	Median	361730000	182700000	179030000	31283000	16279000	15004000	0	0	0	330450000	166420000	164030000	0	0	0	27203	3132	25768	170534;170535;170536	230786;230787;230788	230787			3	
KFDHESSPGTDEDK	2	Unmodified	1590.6798	0.67979466	2408	Q13427	PPIG	Peptidyl-prolyl cis-trans isomerase G	yes	yes	0	0	0	1			By MS/MS		3	0			3									3		8.8278	8.8278	2;3	0.00024955	6580	160511_QHF_FH_JSI11i_3	79.652	67.675			1.146	1.0846	30.052	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.146	1.0846	30.052	2	2	Median	NaN	NaN	NaN	0	0	Median	66228000	33513000	32715000	0	0	0	0	0	0	66228000	33513000	32715000	0	0	0	27204	2408	25769	170537;170538;170539	230789;230790;230791;230792	230791			4	
KFDIDIR	1	Unmodified	905.49707	0.49706667	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		42.997	42.224	3	0.033186	35315	160511_QHF_FH_JSI10i_3	25.737	7.7013			1.0047	1.0621	45.758	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2101	1.4679	NaN	1	0	Median	0.83423	0.76851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26998000	14700000	12298000	0	0	0	5860300	2653500	3206800	21138000	12046000	9091400	0	0	0	27205	162	25770	170540;170541	230793	230793			1	
KFDIEAWMPGR	1	Unmodified	1348.6598	0.65979168	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		76.945	76.945	3	2.3223E-05	68586	160511_QHF_FH_JSI11i_3	76.655	64.029			0.89327	0.8311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89327	0.8311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16402000	8201200	8200600	0	0	0	0	0	0	16402000	8201200	8200600	0	0	0	27206	4889	25771	170542	230794;230795	230794			2	
KFDILVTTPNR	1	Unmodified	1302.7296	0.7295858	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		53.53	52.486	3	0.0046149	43069	160511_QHF_FH_JSI9i_3	42.095	32.408			1.066	0.85982	18.171	3	0	Median	1.066	0.85982	NaN	1	0	Median	0.65147	0.73216	NaN	1	0	Median	1.1337	1.0522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68445000	37844000	30601000	29637000	16953000	12684000	22882000	13517000	9365500	15926000	7374100	8551700	0	0	0	27207	5530	25772	170543;170544;170545	230796;230797	230797			2	
KFDLGQDVIDFTGHALALYR	1	Unmodified	2278.1746	0.17461691	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	2	3	4	2	98.18	94.321	3;4	4.7043E-68	90636	160511_QHF_FH_JSI11i_3	226.45	218.36			1.0212	1.0468	17.805	11	2	Median	1.259	1.0812	3.8549	2	0	Median	0.934	1.0468	28.305	3	2	Median	1.0289	0.96982	18.781	4	0	Median	0.98397	1.0007	11.294	2	0	Median	5157000000	2484500000	2672600000	355660000	146640000	209020000	545600000	305580000	240020000	2142200000	1019700000	1122500000	2113600000	1012500000	1101000000	27208	1702;1368	25773	170546;170547;170548;170549;170550;170551;170552;170553;170554;170555;170556	230798;230799;230800;230801;230802;230803;230804;230805;230806;230807;230808;230809;230810;230811	230798			13	
KFDLGQDVIDFTGHALALYR	1	Acetyl (K)	2320.1852	0.18518159	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	1	0	0	1			By MS/MS		16	0									1			1		96.853	87.447	3	3.4121E-33	49774	160513_QHF_FH_JSI11Kac_6	216.49	179.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131190000	131190000	0	0	0	0	0	0	0	131190000	131190000	0	0	0	0	27209	1702;1368	25773	170557	230812	230812	1305		1	
KFDLNSPWEAFPVYR	1	Unmodified	1867.9257	0.92571943	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	3	1		94.493	93.794	3	1.6941E-05	78231	160511_QHF_FH_JSI10i_3	114.31	103.84			0.80174	0.88061	67.333	4	3	Median	0.28207	0.24126	NaN	1	1	Median	0.80174	0.94207	9.8409	2	2	Median	0.92591	0.88247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144810000	81702000	63106000	9558400	6115200	3443300	52110000	31130000	20980000	83139000	44457000	38682000	0	0	0	27210	534	25774	170558;170559;170560;170561;170562	230813;230814;230815;230816;230817;230818	230816			6	
KFDLWSLPK	2	Unmodified	1132.6281	0.62808085	2350	Q13107	USP4	Ubiquitin carboxyl-terminal hydrolase 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	71.869	71.72	3	0.00061302	62225	160511_QHF_FH_JSI12i_3	64.297	58.296			0.98117	0.96208	14.238	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1469	1.064	NaN	1	0	Median	0.83939	0.86994	NaN	1	0	Median	37601000	17215000	20386000	0	0	0	0	0	0	13113000	7814400	5298900	24488000	9400700	15087000	27211	2350	25775	170563;170564	230819;230820;230821	230821			3	
KFDQLLAEEK	2	Unmodified	1219.6449	0.64485312	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.16	4.28		9	13					1	2	5	6	7	7	41.547	39.672	2;3	6.1243E-11	34681	160511_QHF_FH_JSI9i_2	160.36	113.16			0.76445	0.659	104.72	25	22	Median	0.72849	0.62752	45.011	5	3	Median	2.3497	2.9017	91.618	6	6	Median	2.4963	2.5358	121.24	7	7	Median	0.5439	0.58681	126.22	7	6	Median	8513700000	3976800000	4536900000	703800000	361630000	342170000	1566700000	660580000	906090000	2965700000	1407000000	1558600000	3277600000	1547600000	1730000000	27212	1436;1437;3263;1445	25776	170565;170566;170567;170568;170569;170570;170571;170572;170573;170574;170575;170576;170577;170578;170579;170580;170581;170582;170583;170584;170585;170586;170587;170588;170589	230822;230823;230824;230825;230826;230827;230828;230829;230830;230831;230832;230833;230834;230835;230836;230837;230838;230839;230840;230841;230842;230843;230844;230845;230846;230847;230848;230849;230850;230851;230852;230853;230854;230855	230838			34	
KFDQLLAEEK	2	Acetyl (K)	1261.6554	0.65541781	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	1	0	0	1		By MS/MS	By matching		14.5	0.5							1	1			1	1		63.984	53.171	2	0.032654	29069	160513_QHF_FH_JSI10Kac_4	67.726	46.855			0.76602	0.83628	58.376	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2636	NaN	1	0	Median	0.55715	0.55346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47826000	23746000	24080000	0	0	0	43313000	21014000	22299000	4512500	2732100	1780400	0	0	0	27213	1436;1437;3263;1445	25776	170590;170591	230856	230856	1405		0	
KFDQLLAEEKTISAK	3	Acetyl (K)	1761.9513	0.95126548	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		73.123	63.74	3	0.012452	34564	160513_QHF_FH_JSI11Kac_6	65.949	55.61			3.0891	2.9606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0891	2.9606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18577000	6272400	12305000	0	0	0	0	0	0	18577000	6272400	12305000	0	0	0	27214	1436	25777	170592	230857	230857	1405;1406		1	
KFDSSYDR	1	Unmodified	1016.4563	0.45632407	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	10.912	10.732	2;3	0.0014455	8288	160511_QHF_FH_JSI11i_3	64.04	45.31			0.93466	0.94481	13.344	6	0	Median	NaN	NaN	NaN	0	0	Median	0.93466	1.1015	5.8925	2	0	Median	1.0105	0.94225	3.6261	2	0	Median	0.82039	0.84751	12.127	2	0	Median	594320000	326010000	268320000	0	0	0	144840000	88741000	56104000	350000000	181590000	168410000	99480000	55678000	43801000	27215	3973	25778	170593;170594;170595;170596;170597;170598	230858;230859;230860;230861;230862	230858			5	
KFDVNTSAVQVLIEHIGNLDR	1	Unmodified	2367.2547	0.25465814	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			92.574	85.285	3	4.6448E-08	49487	160513_QHF_FH_JSI10Kac_6	133.95	114.37			0.81668	0.81876	42.657	2	2	Median	1.2919	1.107	NaN	1	1	Median	0.51628	0.60556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134110000	73017000	61093000	54357000	18277000	36080000	79753000	54740000	25013000	0	0	0	0	0	0	27216	2155	25779	170599;170600	230863;230864	230864			2	
KFEDATVQSDMK	2	Unmodified	1397.6497	0.6496805	1827	P54652	HSPA2	Heat shock-related 70 kDa protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.775	24.75	3	0.039224	20598	160511_QHF_FH_JSI12i_3	29.55	19.478			0.64248	0.64389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64248	0.64389	NaN	1	1	Median	62149000	33390000	28759000	0	0	0	0	0	0	0	0	0	62149000	33390000	28759000	27217	1827	25780	170601	230865	230865			1	
KFEDEYSEYLK	2	Unmodified	1449.6664	0.66637643	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	50.21	49.164	2;3	0.0019539	42170	160511_QHF_FH_JSI12i_2	50.207	35.176			0.81524	0.82312	28.915	5	2	Median	NaN	NaN	NaN	0	0	Median	0.85425	1.0427	34.817	2	1	Median	0.81524	0.82312	NaN	1	0	Median	0.70364	0.7799	34.96	2	1	Median	355730000	181690000	174040000	0	0	0	116570000	56309000	60260000	109480000	49125000	60350000	129680000	76256000	53426000	27218	4674	25781	170602;170603;170604;170605;170606	230866;230867;230868	230866			3	
KFEDSEK	2	Unmodified	881.41306	0.41306227	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	5.3204	5.3682	2	0.03648	3088	160511_QHF_FH_JSI11i_3	49.418	20.042			0.73246	0.73355	17.942	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67514	0.64615	NaN	1	0	Median	0.79465	0.83278	NaN	1	0	Median	830900000	451760000	379140000	0	0	0	0	0	0	297930000	180370000	117570000	532970000	271390000	261580000	27219	899	25782	170607;170608	230869	230869			1	
KFEEEGNPYYSSAR	1	Unmodified	1675.7478	0.74781464	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	28.664	28.287	2;3	0.00020282	24307	160511_QHF_FH_JSI11i_3	68.168	63.925			1.1421	1.1424	26.811	9	5	Median	1.3538	1.1424	NaN	1	1	Median	1.2825	1.5447	38.282	2	1	Median	1.1988	1.1373	15.216	3	1	Median	1.0193	1.0375	22.455	3	2	Median	644450000	323670000	320790000	49746000	18231000	31515000	89623000	49356000	40267000	259800000	129440000	130370000	245280000	126640000	118640000	27220	4852	25783	170609;170610;170611;170612;170613;170614;170615;170616;170617;170618	230870;230871;230872;230873;230874;230875;230876;230877;230878;230879;230880;230881;230882;230883;230884	230873			15	
KFEEETVK	2	Unmodified	1008.5128	0.51277632	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	5.86	5.79		4	1					2		1		3	3	14.28	11.364	2;3	0.0053191	9643	160511_QHF_FH_JSI12i_2	66.27	40.376			0.68367	0.75179	58.785	7	5	Median	1.8498	1.5692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47987	0.48682	81.23	3	3	Median	0.58582	0.6224	36.235	3	1	Plateau	496110000	283010000	213090000	70906000	27411000	43495000	0	0	0	252600000	147560000	105040000	172600000	108040000	64559000	27221	454	25784	170619;170620;170621;170622;170623;170624;170625	230885;230886;230887;230888;230889;230890;230891;230892	230885			8	
KFEEFQTDMAAHEER	1	Unmodified	1866.8207	0.82066201	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		36.797	36.797	3	0.010127	32259	160511_QHF_FH_JSI11i_3	45.14	38.249			1	0.92583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1	0.92583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13975000	9119100	4856300	0	0	0	0	0	0	13975000	9119100	4856300	0	0	0	27222	2470	25785	170626	230893	230893			1	
KFEEIPIAHIK	2	Unmodified	1323.7551	0.75507227	2110	P82912	MRPS11	28S ribosomal protein S11, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							1	2	2	4	48.859	48.294	2;3;4	0.00098818	40993	160511_QHF_FH_JSI12i_3	45.077	36.348			0.8883	0.99572	30.814	8	3	Median	2.0136	1.7016	NaN	1	0	Median	0.85995	1.0323	4.8366	2	0	Median	0.8719	0.818	27.537	2	1	Median	0.86386	0.89247	30.051	3	2	Median	1007000000	591470000	415540000	11169000	4413800	6755600	52226000	27464000	24762000	267710000	148420000	119290000	675900000	411170000	264730000	27223	2110	25786	170627;170628;170629;170630;170631;170632;170633;170634;170635	230894;230895;230896;230897;230898;230899;230900;230901;230902;230903;230904	230900			11	
KFEEMNAELEENK	2	Unmodified	1609.7294	0.72938739	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	36.829	36.16	2;3	5.6639E-09	30675	160511_QHF_FH_JSI12i_3	103.22	69.992			0.76605	0.96124	13.248	3	2	Plateau	1.5017	1.2464	NaN	1	1	Median	0.76605	0.96124	NaN	1	0	Median	1.1279	1.0462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86256000	44820000	41437000	25483000	14244000	11239000	40647000	23239000	17408000	20127000	7336600	12790000	0	0	0	27224	2988	25787	170636;170637;170638;170639	230905;230906;230907;230908	230908			4	
KFEQGFITDPVVLSPSHTVGDVLEAK	2	Unmodified	2812.4647	0.4647105	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								4	2	1	91.262	90.75	3;4	2.6272E-21	80740	160511_QHF_FH_JSI11i_3	124.17	117.71			0.95443	1.0517	34.081	7	2	Median	NaN	NaN	NaN	0	0	Median	1.1119	1.2855	23.56	4	2	Median	0.81214	0.75922	22.369	2	0	Median	0.83148	0.8579	NaN	1	0	Median	332580000	172280000	160290000	0	0	0	89142000	48837000	40305000	219510000	110970000	108530000	23932000	12476000	11455000	27225	1182	25788	170640;170641;170642;170643;170644;170645;170646	230909;230910;230911;230912;230913;230914;230915;230916;230917;230918;230919;230920	230912			12	
KFESEILEAISQNSVVIIR	1	Unmodified	2174.1947	0.19468365	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.887	84.166	3	2.6624E-05	47801	160513_QHF_FH_JSI10Kac_6	127.17	118.57			0.63288	0.76067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63288	0.76067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65241000	44014000	21227000	0	0	0	65241000	44014000	21227000	0	0	0	0	0	0	27226	2265	25789	170647	230921	230921			1	
KFESLFPGK	2	Unmodified	1051.5702	0.57023162	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	46.404	45.549	2;3	7.3244E-05	38244	160511_QHF_FH_JSI10i_3	73.985	52.521			0.8243	0.87632	17.346	8	1	Median	1.129	0.91278	7.3953	2	0	Median	0.78105	0.90922	3.5808	2	0	Median	0.68041	0.63929	13.999	2	0	Median	0.87261	0.88834	6.3673	2	1	Median	1323400000	737250000	586150000	290140000	141250000	148880000	221240000	129850000	91393000	322370000	195260000	127110000	489660000	270890000	218770000	27227	2344	25790	170648;170649;170650;170651;170652;170653;170654;170655	230922;230923;230924;230925;230926;230927;230928;230929;230930;230931;230932;230933	230927			12	
KFESQDTVALLEAILDGIVDPVDSTLR	1	Unmodified	2943.5441	0.54408303	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.75	96.033	3	2.2694E-20	56746	160513_QHF_FH_JSI10Kac_6	116.35	94.889			0.87805	1.0494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87805	1.0494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97080000	52739000	44341000	0	0	0	97080000	52739000	44341000	0	0	0	0	0	0	27228	2094	25791	170656	230934	230934			1	
KFESTDPR	1	Unmodified	978.47706	0.47705951	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		8.1833	8.1833	2	0.04723	5860	160511_QHF_FH_JSI11i_3	52.716	18.978			1.062	0.98258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.062	0.98258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112590000	53849000	58743000	0	0	0	0	0	0	112590000	53849000	58743000	0	0	0	27229	3503	25792	170657	230935	230935			1	
KFETLLK	2	Unmodified	877.5273	0.52730417	3730	Q8TEA1	NSUN6	Putative methyltransferase NSUN6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			33.348	31.948	3	0.0084158	26690	160511_QHF_FH_JSI10i_3	46.426	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27230	3730	25793	170658	230936	230936			1	
KFFDANYDGK	2	Unmodified	1203.556	0.55603811	2698	Q15691;Q9UPY8	MAPRE1;MAPRE3	Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			7							2	2	1	2	33.871	33.03	2;3	0.00067994	27869	160511_QHF_FH_JSI12i_3	70.488	66.19			1.0012	0.91614	19.112	7	0	Median	1.0155	0.82979	14.815	2	0	Median	0.73179	0.83748	4.1477	2	0	Median	1.0012	0.91614	NaN	1	0	Median	1.2045	1.2213	0.24138	2	0	Median	567800000	269190000	298610000	112830000	54204000	58623000	110910000	63710000	47197000	70141000	36284000	33858000	273930000	114990000	158930000	27231	2698	25794	170659;170660;170661;170662;170663;170664;170665	230937;230938;230939;230940;230941;230942;230943;230944;230945	230944			9	
KFFNVLTTNTDGK	2	Acetyl (K)	1525.7777	0.77765821	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.743	66.107	2	1.0412E-06	35136	160513_QHF_FH_JSI11Kac_5	137.17	100.64			0.073381	0.07329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073381	0.07329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8597000	8013600	583360	0	0	0	0	0	0	8597000	8013600	583360	0	0	0	27232	3891	25795	170666	230946	230946	2987		1	
KFFVGGNWK	2	Acetyl (K)	1123.5815	0.581465	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.871	63.089	2	0.0005094	34529	160513_QHF_FH_JSI10Kac_6	119.27	92.02			0.70322	0.67235	61.042	4	0	Median	0.92219	0.79848	NaN	1	0	Median	1.0461	1.2446	NaN	1	0	Median	0.30474	0.29279	NaN	1	0	Median	0.53624	0.56614	NaN	1	0	Median	569390000	372440000	196950000	47562000	21869000	25693000	159240000	76726000	82509000	284380000	219620000	64754000	78216000	54220000	23996000	27233	1908	25796	170667;170668;170669;170670	230947;230948;230949;230950;230951;230952	230952	1907;1909		6	
KFGATLEIVTDK	2	Unmodified	1320.7289	0.7289171	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	54.078	53.238	2;3	4.0699E-05	46892	160511_QHF_FH_JSI11i_3	82.543	67.667			0.83431	0.81209	21.21	8	0	Median	0.87339	0.72133	3.1076	2	0	Median	0.76624	0.90377	5.487	2	0	Median	1.2099	1.123	5.6981	2	0	Median	0.68772	0.69808	11.755	2	0	Median	710530000	385800000	324730000	173370000	92699000	80674000	210560000	134830000	75729000	191240000	85480000	105760000	135360000	72788000	62571000	27234	2010	25797	170671;170672;170673;170674;170675;170676;170677;170678	230953;230954;230955;230956;230957;230958;230959;230960;230961;230962;230963;230964	230953			12	
KFGDMSYSIR	1	Unmodified	1202.5754	0.57539335	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			42.767	41.22	3	0.0068823	33647	160511_QHF_FH_JSI9i_3	40.154	31.919			0.99384	0.96181	20.181	2	0	Median	1.0469	0.8339	NaN	1	0	Median	0.94348	1.1093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109570000	62281000	47292000	52818000	27498000	25320000	56755000	34783000	21972000	0	0	0	0	0	0	27235	2779	25798	170679;170680	230965	230965			1	
KFGDPVVQSDMK	2	Unmodified	1349.6649	0.66493664	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	4.7	1	6	8					3		4	5	5	4	36.663	34.258	2;3	7.4837E-06	29067	160511_QHF_FH_JSI12i_3	121.02	100.72			1.0851	1.0393	36.691	17	0	Median	1.3394	1.1096	24.425	3	0	Median	0.6625	0.74474	7.2248	5	0	Median	1.028	1.0393	34.408	5	0	Median	1.1647	1.2087	40.875	4	0	Median	8593600000	4079600000	4514000000	844380000	351970000	492410000	1366700000	867210000	499440000	2995800000	1366500000	1629300000	3386800000	1494000000	1892800000	27236	954	25799	170681;170682;170683;170684;170685;170686;170687;170688;170689;170690;170691;170692;170693;170694;170695;170696;170697;170698	230966;230967;230968;230969;230970;230971;230972;230973;230974;230975;230976;230977;230978;230979;230980;230981;230982;230983;230984;230985;230986;230987;230988;230989;230990;230991;230992;230993;230994;230995;230996;230997;230998;230999	230999			34	
KFGDPVVQSDMK	2	Oxidation (M)	1365.6599	0.65985126	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	6.6	5.5			7					3			3	2	5	28.844	25.225	2;3	0.0049295	19941	160511_QHF_FH_JSI12i_3	91.313	82.781			1.2096	1.2458	44.995	9	3	Median	NaN	NaN	NaN	0	0	Median	0.60489	0.69842	81.919	3	1	Plateau	1.1409	1.0992	23.992	2	0	Median	1.2343	1.2702	23.853	4	2	Median	848150000	396920000	451230000	0	0	0	107330000	49936000	57393000	86569000	41790000	44778000	654250000	305200000	349050000	27237	954	25799	170699;170700;170701;170702;170703;170704;170705;170706;170707;170708	231000;231001;231002;231003;231004;231005;231006;231007;231008;231009	231006		528	9	
KFGDPVVQSDMK	2	Acetyl (K);Oxidation (M)	1407.6704	0.67041595	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	1	1		By MS/MS		By MS/MS	13.5	0.5						1	1				1		1	46.685	37.111	2	0.0096987	20708	160513_QHF_FH_JSI10Kac_4	53.683	38.111			0.55404	0.62208	60.884	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81682	0.95678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.37579	0.40446	NaN	1	0	Median	9281900	5911400	3370400	0	0	0	3214300	1840200	1374100	0	0	0	6067600	4071200	1996400	27238	954	25799	170709;170710	231010;231011;231012	231010	717;718	528	2	
KFGDPVVQSDMK	2	Acetyl (K)	1391.6755	0.67550132	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				2	1		57.833	47.939	2	4.8129E-11	25976	160513_QHF_FH_JSI10Kac_4	121.08	99.083			1.3214	1.5634	69.153	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2002	1.4129	14.318	2	0	Median	0.44125	0.43203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23256000	12643000	10613000	0	0	0	19306000	9710900	9594800	3949800	2931600	1018200	0	0	0	27239	954	25799	170711;170712;170713	231013;231014;231015	231013	717;718		3	
KFGEAIGMGFPVK	2	Unmodified	1379.7271	0.72714296	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	1		2	64.621	63.609	2;3	0.00010182	52164	160511_QHF_FH_JSI9i_3	70.622	62.897			0.78771	0.79512	57.348	5	1	Median	2.0823	1.7101	17.906	2	1	Median	0.4832	0.55372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65666	0.67024	24.163	2	0	Median	449590000	210680000	238910000	127950000	40494000	87458000	73990000	52605000	21385000	0	0	0	247640000	117580000	130060000	27240	2087	25800	170714;170715;170716;170717;170718	231016;231017;231018;231019;231020;231021;231022;231023	231019			8	
KFGEEIAR	1	Unmodified	948.50288	0.50288033	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							3	2	1	1	17.342	16.588	2;3	0.0013664	13456	160511_QHF_FH_JSI10i_3	59.245	35.09			0.94203	1.0007	15.188	7	0	Median	1.2652	1.0264	18.834	3	0	Plateau	0.95052	1.0922	10.163	2	0	Median	0.94203	0.87037	NaN	1	0	Median	0.87269	1.0007	NaN	1	0	Median	1001800000	500630000	501150000	202780000	88642000	114140000	355330000	180240000	175080000	371830000	191540000	180280000	71844000	40201000	31643000	27241	3766	25801	170719;170720;170721;170722;170723;170724;170725	231024;231025;231026;231027;231028;231029	231025			6	
KFGLSVGHHLGK	2	Acetyl (K)	1320.7303	0.73025451	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	47.893	38.524	3;4	0.002741	21047	160513_QHF_FH_JSI11Kac_6	55.261	43.395			0.60591	0.67055	50.373	5	1	Median	1.26	1.0431	NaN	1	0	Median	0.76214	0.92145	NaN	1	0	Median	0.38293	0.37537	27.865	2	1	Median	0.60591	0.67055	NaN	1	0	Median	78476000	52149000	26328000	6276700	4046900	2229800	20630000	9996300	10633000	41180000	31349000	9831000	10390000	6756900	3633400	27242	1080	25802	170726;170727;170728;170729;170730	231030;231031;231032	231031	924		3	
KFGNPGEK	2	Unmodified	875.45012	0.45011648	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	7.2081	6.9642	2;3	0.0033998	4836	160511_QHF_FH_JSI10i_3	73.26	49.288			0.88282	0.92659	7.8726	8	0	Median	1.2558	0.98723	6.2182	2	0	Median	0.82139	0.94822	6.01	2	0	Median	0.979	0.92262	11.084	2	0	Median	0.83876	0.85107	0.55816	2	0	Median	9631600000	4726800000	4904800000	2739200000	1067300000	1671900000	2029400000	1089700000	939740000	2031700000	904230000	1127500000	2831300000	1665600000	1165600000	27243	1128	25803	170731;170732;170733;170734;170735;170736;170737;170738	231033;231034;231035;231036;231037;231038;231039;231040;231041;231042;231043	231036			11	
KFGNPGEK	2	Acetyl (K)	917.46068	0.46068117	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	1		By MS/MS		By matching	14.7	0.471							1	2			2		1	19.718	10.305	2	0.040691	8055	160513_QHF_FH_JSI10Kac_4	80.684	50.264			0.99938	1.2006	16.046	3	0	Median	NaN	NaN	NaN	0	0	Median	0.98159	1.1589	4.9999	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3605	1.5197	NaN	1	0	Median	39561000	19403000	20158000	0	0	0	35324000	17323000	18001000	0	0	0	4236700	2079800	2156900	27244	1128	25803	170739;170740;170741	231044	231044	975		1	
KFGNPGEKLVK	3	Acetyl (K)	1257.7081	0.70812208	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	47.112	37.798	3	0.00084568	19785	160513_QHF_FH_JSI12Kac_6	84.479	68.59			0.79108	0.95739	14.565	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79108	0.95739	NaN	1	0	Median	0.74963	0.73255	NaN	1	0	Median	0.84451	0.92509	NaN	1	0	Median	39841000	21340000	18500000	0	0	0	20744000	12006000	8737100	6041700	3226000	2815700	13055000	6107800	6947600	27245	1128	25804	170742;170743;170744;170745	231045;231046;231047	231046	975		3	
KFGNPGER	1	Unmodified	903.45626	0.45626449	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			7.7392	7.197	2;3	0.021586	5016	160511_QHF_FH_JSI9i_3	45.081	21.109			0.54832	0.63381	15.893	3	0	Plateau	1.032	0.83109	3.9523	2	0	Median	0.54771	0.63381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187620000	107480000	80138000	118380000	59858000	58521000	69239000	47622000	21617000	0	0	0	0	0	0	27246	3893	25805	170746;170747;170748	231048;231049	231049			2	
KFGNPGER	1	Acetyl (K)	945.46683	0.46682918	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	19.929	10.524	2	0.028119	7343	160513_QHF_FH_JSI10Kac_5	86.953	59.991			0.93754	1.0181	7.3713	4	0	Median	NaN	NaN	NaN	0	0	Median	0.83229	0.98232	9.5956	2	0	Median	1.0068	0.986	NaN	1	0	Median	0.98519	1.0839	NaN	1	0	Median	45287000	24676000	20611000	0	0	0	17156000	8636500	8520000	12615000	8647900	3966600	15516000	7391400	8124500	27247	3893	25805	170749;170750;170751;170752	231050;231051	231051			2	
KFGNSEFDPPGPNVATTTVSDDVSMTFITSK	2	Unmodified	3288.5496	0.54963869	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		94.418	94.418	3	2.301E-19	84098	160511_QHF_FH_JSI11i_3	94.163	88.259			1.4939	1.3754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4939	1.3754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20591000	4911700	15679000	0	0	0	0	0	0	20591000	4911700	15679000	0	0	0	27248	570	25806	170753	231052;231053	231052			2	
KFGPVVAPK	2	Unmodified	941.56984	0.56983769	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	26.73	26.053	2;3	0.0021104	21213	160511_QHF_FH_JSI9i_3	77.282	56.129			1.0885	1.0061	20.146	8	1	Median	1.2471	0.99625	3.497	2	0	Median	0.76409	0.88329	6.3484	2	0	Median	1.3458	1.286	35.403	2	1	Median	1.0478	1.0657	7.4541	2	0	Median	3509300000	1779500000	1729800000	791960000	408810000	383150000	849260000	477350000	371920000	693960000	292770000	401190000	1174100000	600610000	573540000	27249	2723	25807	170754;170755;170756;170757;170758;170759;170760;170761;170762	231054;231055;231056;231057;231058;231059;231060;231061;231062;231063;231064;231065;231066;231067	231064			14	
KFGPVVAPKPK	3	Unmodified	1166.7176	0.71756456	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				25.275	23.935	3	0.035242	19329	160511_QHF_FH_JSI9i_3	43.958	40.313			0.83048	0.68692	NaN	1	1	Median	0.83048	0.68692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31848000	15392000	16456000	31848000	15392000	16456000	0	0	0	0	0	0	0	0	0	27250	2723	25808	170763	231068	231068			1	
KFGQYAGHVVPTILEK	2	Unmodified	1785.9778	0.977755	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		58.403	58.403	3	0.011461	51809	160511_QHF_FH_JSI11i_3	43.37	33.312			0.45805	0.43874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45805	0.43874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30348000	22083000	8264300	0	0	0	0	0	0	30348000	22083000	8264300	0	0	0	27251	2485	25809	170764	231069	231069			1	
KFGTINIVHPK	2	Unmodified	1252.7292	0.72919187	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.4			10						7	4	4	6	3	40.769	36.606	3;4	4.0084E-05	30430	160511_QHF_FH_JSI12i_3	70.488	67.2			0.84833	0.85287	49.819	17	2	Median	0.8711	0.71943	30.283	4	1	Linear	0.76441	0.89746	21.826	4	0	Median	0.88734	0.85561	79.564	6	1	Median	0.84833	0.85287	9.3939	3	0	Median	3030400000	1397300000	1633100000	664360000	283380000	380970000	694420000	373580000	320830000	1029800000	377190000	652580000	641890000	363150000	278740000	27252	5697	25810	170765;170766;170767;170768;170769;170770;170771;170772;170773;170774;170775;170776;170777;170778;170779;170780;170781	231070;231071;231072;231073;231074;231075;231076;231077;231078;231079;231080;231081;231082;231083;231084;231085;231086;231087;231088;231089;231090;231091;231092;231093;231094;231095;231096;231097;231098;231099	231094			28	
KFGTNFTK	2	Unmodified	941.49707	0.49706667	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		20.364	19.127	3	0.013164	15376	160511_QHF_FH_JSI9i_3	36.334	31.346			1.0953	0.87443	NaN	1	0	Median	1.0953	0.87443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160050000	61772000	98278000	160050000	61772000	98278000	0	0	0	0	0	0	0	0	0	27253	171	25811	170782;170783	231100;231101	231101			2	
KFGVESDK	2	Unmodified	908.46035	0.46034682	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.32	10.414	2	0.022387	7743	160511_QHF_FH_JSI12i_3	44.349	13.681			0.81908	0.8507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81908	0.8507	NaN	1	0	Median	38647000	25566000	13080000	0	0	0	0	0	0	0	0	0	38647000	25566000	13080000	27254	2637	25812	170784	231102	231102			1	
KFGVLSDNFK	2	Unmodified	1153.6132	0.61315906	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	48.161	46.842	2;3	0.00011169	38276	160511_QHF_FH_JSI9i_3	73.887	66.508			0.992	0.91623	9.402	5	1	Median	1.1362	0.91182	3.8884	2	0	Median	0.77977	0.89852	2.7605	2	0	Median	NaN	NaN	NaN	0	0	Median	0.992	1.1085	NaN	1	1	Median	507570000	266580000	240980000	242300000	118760000	123540000	191600000	111670000	79934000	0	0	0	73661000	36150000	37511000	27255	2241	25813	170785;170786;170787;170788;170789	231103;231104;231105;231106;231107;231108;231109;231110;231111	231106			9	
KFGVLSDNFK	2	Acetyl (K)	1195.6237	0.62372375	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1	1	1	1	1	72.25	61.954	2	0.0017533	31023	160513_QHF_FH_JSI10Kac_5	94.692	72.606			1.4942	1.5318	61.803	4	1	Median	1.2661	1.0718	NaN	1	0	Median	1.0288	1.2048	NaN	1	0	Median	4.2868	4.1796	NaN	1	1	Median	1.7634	1.9477	NaN	1	0	Median	52545000	19250000	33295000	8136700	3919600	4217100	11073000	6233300	4839500	23509000	4894700	18614000	9826700	4202400	5624300	27256	2241	25813	170790;170791;170792;170793	231112;231113;231114;231115;231116;231117	231117	2342		6	
KFGVVTEVVMIYDAEK	2	Unmodified	1826.9488	0.94882264	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			93.177	92.156	3	2.022E-05	76758	160511_QHF_FH_JSI10i_3	87.148	76.294			0.53677	0.63728	38.503	3	2	Median	1.4457	1.2361	NaN	1	1	Median	0.52824	0.63451	0.61592	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22270000	11880000	10391000	7647100	2127200	5519900	14623000	9752300	4870900	0	0	0	0	0	0	27257	4053	25814	170794;170795;170796;170797	231118;231119;231120;231121	231118			4	
KFGYVDFESAEDLEK	2	Unmodified	1775.8254	0.82539626	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		69.18	68.444	3	0.0004274	57377	160511_QHF_FH_JSI10i_3	72.315	59.144			1.3077	1.3335	8.5358	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2701	1.4165	NaN	1	1	Median	1.3464	1.2554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66170000	31300000	34870000	0	0	0	21065000	9884600	11180000	45106000	21415000	23690000	0	0	0	27258	1154	25815	170798;170799	231122;231123	231123			2	
KFHEAQLSEK	2	Acetyl (K)	1257.6354	0.63535107	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		27.617	19.294	3	0.00038787	11384	160513_QHF_FH_JSI10Kac_6	84.289	60.438			0.25047	0.24327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25047	0.24327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61949000	43993000	17956000	0	0	0	16510000	7239500	9270500	45438000	36753000	8685000	0	0	0	27259	558	25816	170800;170801;170802	231124;231125;231126	231125	291		3	
KFHTVSGSK	2	Unmodified	989.52943	0.52942943	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	4	2	5.5856	5.2803	2;3	0.00078236	3293	160511_QHF_FH_JSI9i_3	74.464	61.428			0.8997	0.83269	24.942	8	2	Median	1.1575	0.95401	8.6403	3	0	Median	0.77806	0.90699	23.091	2	1	Median	0.66644	0.63098	40.307	2	1	Median	0.7063	0.72735	NaN	1	0	Median	5342100000	2530800000	2811400000	2243600000	1018200000	1225300000	1396600000	729700000	666940000	1382700000	613670000	769020000	319230000	169150000	150070000	27260	4308	25817	170803;170804;170805;170806;170807;170808;170809;170810;170811;170812;170813	231127;231128;231129;231130;231131;231132;231133;231134;231135;231136;231137;231138	231136			12	
KFHTVSGSK	2	Acetyl (K)	1031.54	0.53999412	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									5		3		2	12.488	5.4868	2;3	0.0026707	4725	160513_QHF_FH_JSI10Kac_6	87.308	60.705			0.040773	0.0453	192.35	3	3	Median	NaN	NaN	NaN	0	0	Median	0.93067	1.1183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.036586	0.040217	16.831	2	2	Median	23245000	17709000	5536400	0	0	0	6796300	2077500	4718800	0	0	0	16449000	15631000	817600	27261	4308	25817	170814;170815;170816;170817;170818	231139;231140;231141;231142;231143	231143	3122		5	
KFIDIAAAK	2	Unmodified	975.57532	0.57531699	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							3	1	1	1	38.442	37.421	2;3	0.0033315	31348	160511_QHF_FH_JSI10i_3	40.715	27.337			0.94303	1.0164	54.172	6	3	Median	0.72295	1.2064	83.093	3	3	Plateau	0.81441	0.93392	NaN	1	0	Median	1.3812	1.2856	NaN	1	0	Median	1.092	1.1063	NaN	1	0	Median	546520000	285200000	261320000	204180000	97017000	107160000	74580000	39507000	35073000	97649000	49934000	47715000	170110000	98740000	71367000	27262	2373	25818	170819;170820;170821;170822;170823;170824	231144;231145;231146;231147;231148;231149	231146			5	
KFIDQVVEK	2	Unmodified	1104.6179	0.61791009	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	30.626	30.583	2;3	0.02747	25730	160511_QHF_FH_JSI12i_3	33.225	16.199			0.35114	0.55149	29.428	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60131	0.55149	NaN	1	1	Median	0.44188	0.44689	37.91	2	2	Median	118920000	71551000	47373000	0	0	0	0	0	0	28344000	19229000	9115400	90580000	52322000	38257000	27263	695	25819	170825;170826;170827	231150;231151;231152	231151			3	
KFIQENIFGICPHMTEDNK	2	Unmodified	2320.098	0.098022845	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		70.294	69.566	3	2.2673E-06	61625	160511_QHF_FH_JSI11i_3	86.727	78.413			0.90941	0.92178	63.196	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2611	1.4411	NaN	1	1	Median	0.65583	0.5896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45938000	28376000	17562000	0	0	0	11540000	4799100	6740600	34398000	23576000	10822000	0	0	0	27264	1344	25820	170828;170829;170830	231153;231154;231155	231154			3	
KFIQTFGK	2	Acetyl (K)	1009.5597	0.55966693	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1	By MS/MS		By matching	By MS/MS	15.8	0.433								1	3	2		1	1	56.251	46.399	2	0.0082575	24171	160513_QHF_FH_JSI12Kac_6	103.74	66.718			0.92095	0.85584	16.748	4	0	Median	1.0197	0.85584	13.541	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68442	0.66994	NaN	1	0	Median	0.9259	0.9496	NaN	1	0	Median	57842000	30175000	27667000	14774000	7624300	7149900	0	0	0	23809000	12437000	11372000	19259000	10114000	9145000	27265	2094	25821	170831;170832;170833;170834	231156	231156	2191;2198		1	
KFIYALK	2	Unmodified	881.53747	0.53747492	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			39.568	38.066	3	0.017313	31851	160511_QHF_FH_JSI10i_3	38.792	27.918			0.84905	0.83597	3.2962	2	0	Median	0.98443	0.81672	NaN	1	0	Median	0.73229	0.85569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35033000	16245000	18789000	16725000	7716300	9008800	18308000	8528600	9779800	0	0	0	0	0	0	27266	4733	25822	170835;170836	231157	231157			1	
KFLPLFDR	1	Acetyl (K)	1076.6019	0.6018661	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.268	72.954	2	0.01078	40184	160513_QHF_FH_JSI11Kac_6	80.787	38.679			0.13241	0.1271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13241	0.1271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108660000	91947000	16714000	0	0	0	0	0	0	108660000	91947000	16714000	0	0	0	27267	1959	25823	170837	231158	231158	1978		1	
KFLQEFYQDDELGK	2	Unmodified	1758.8465	0.84646606	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		61.281	60.776	2;3	6.4402E-06	53923	160511_QHF_FH_JSI11i_3	127.37	84.63			0.36166	0.37122	155	2	2	Median	NaN	NaN	NaN	0	0	Median	0.10693	0.12406	NaN	1	1	Median	1.2232	1.1108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58235000	24721000	33514000	0	0	0	10681000	9014000	1666800	47554000	15707000	31847000	0	0	0	27268	1411	25824	170838;170839;170840	231159;231160;231161	231159			3	
KFLVHNVK	2	Acetyl (K)	1025.6022	0.60220045	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	35.988	26.967	3	0.018548	14270	160513_QHF_FH_JSI12Kac_6	47.198	37.61			0.26208	0.24028	164.04	3	1	Median	NaN	NaN	NaN	0	0	Median	1.5838	1.8625	NaN	1	0	Median	0.26208	0.24028	NaN	1	0	Median	0.06673	0.072667	NaN	1	1	Median	77929000	55566000	22362000	0	0	0	16643000	6603600	10039000	57385000	45098000	12287000	3900700	3865000	35710	27269	2037	25825	170841;170842;170843	231162;231163;231164	231163	2086		3	
KFMDQHPEMDFSK	2	Unmodified	1638.717	0.71704856	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	41.338	40.515	2;3	1.9622E-05	34006	160511_QHF_FH_JSI10i_3	74.678	66.954			1.353	1.2433	145.94	4	2	Median	1.1552	0.95193	NaN	1	0	Median	0.54184	0.634	NaN	1	0	Median	17.314	16.588	NaN	1	1	Median	1.5847	1.6238	NaN	1	1	Median	481990000	149290000	332700000	75707000	28447000	47261000	28079000	12755000	15324000	7083000	252930	6830000	371120000	107840000	263280000	27270	5497	25826	170844;170845;170846;170847;170848	231165;231166;231167;231168	231166			3	
KFMDQHPEMDFSK	2	Oxidation (M)	1654.712	0.71196318	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				33.94	32.509	3	0.036587	26536	160511_QHF_FH_JSI9i_3	31.827	24.419			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4421500	4421500	0	4421500	4421500	0	0	0	0	0	0	0	0	0	0	27271	5497	25826	170849	231169	231169			1	
KFMDQHPEMDFSK	2	Acetyl (K)	1680.7276	0.72761325	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	1	0	0	1		By MS/MS			15	0								1			1			61.911	51.243	3	0.05233	26026	160513_QHF_FH_JSI10Kac_5	32.068	21.423			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1017100	0	1017100	0	0	0	1017100	0	1017100	0	0	0	0	0	0	27272	5497	25826	170850	231170	231170			1	
KFMGTELNGK	2	Unmodified	1123.5696	0.56957969	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	24.367	23.702	2;3	0.0032773	19644	160511_QHF_FH_JSI10i_3	51.762	35.509			0.59328	0.54701	63.811	6	6	Median	0.47006	0.38457	14.682	2	2	Median	0.19625	0.23053	NaN	1	1	Median	1.4819	1.3879	NaN	1	1	Median	0.70855	0.7208	3.8684	2	2	Median	258330000	168400000	89932000	70919000	46870000	24049000	26836000	20462000	6374000	31276000	13493000	17783000	129300000	87577000	41726000	27273	309	25827	170851;170852;170853;170854;170855;170856	231171;231172;231173;231174;231175;231176	231172			6	
KFNALFAQGNYSEAAK	2	Unmodified	1757.8737	0.87368386	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		51.919	50.868	2;3	5.6796E-08	41656	160511_QHF_FH_JSI9i_3	130.72	120.44			0.82288	0.76128	74.902	3	1	Median	2.3621	1.9217	NaN	1	1	Median	0.37545	0.43624	NaN	1	0	Median	0.82288	0.76128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242670000	128670000	114010000	90637000	27174000	63463000	62038000	45855000	16183000	89999000	55637000	34362000	0	0	0	27274	2155	25829	170857;170858;170859;170860	231177;231178;231179;231180	231179			4	
KFNALFAQGNYSEAAK	2	Acetyl (K)	1799.8842	0.88424855	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.2	0.433								3	1		1	3		74.428	64.17	2;3	8.4262E-62	34809	160513_QHF_FH_JSI11Kac_6	204.48	174.67			0.38952	0.3716	15.046	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38952	0.3716	15.046	3	0	Median	NaN	NaN	NaN	0	0	Median	43110000	31707000	11403000	0	0	0	0	0	0	43110000	31707000	11403000	0	0	0	27275	2155	25829	170861;170862;170863;170864	231181;231182;231183;231184;231185;231186;231187	231181	2260		7	
KFNGEDIDTISPTLGFNIK	2	Unmodified	2108.079	0.078985188	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	83.625	83.529	3	2.812E-11	72533	160511_QHF_FH_JSI12i_3	136.35	117.06			0.92867	0.90723	6.8965	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90851	0.86405	NaN	1	0	Median	0.94927	0.95257	NaN	1	0	Median	95430000	49602000	45827000	0	0	0	0	0	0	42733000	21633000	21100000	52697000	27970000	24727000	27276	1450	25830	170865;170866	231188;231189;231190;231191;231192	231192			5	
KFNILGTNTK	2	Acetyl (K)	1176.6503	0.65027285	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	63.198	53.402	2	0.015024	27865	160513_QHF_FH_JSI12Kac_6	78.556	58.77			1.2062	1.2404	25.783	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.084	1.0337	NaN	1	0	Median	1.3423	1.4884	NaN	1	0	Median	20864000	9621600	11242000	0	0	0	0	0	0	10543000	5301400	5241500	10321000	4320200	6000500	27277	1500	25831	170867;170868	231193;231194;231195	231194	1517		3	
KFNQVLGDDEK	2	Unmodified	1291.6408	0.64083038	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			25.622	24.314	2	0.00038491	20053	160511_QHF_FH_JSI10i_3	91.584	36.034			0.46548	0.46764	18.089	2	2	Median	0.62064	0.53145	NaN	1	1	Median	0.34911	0.4115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17803000	13379000	4424200	8933600	6452700	2480900	8869900	6926600	1943300	0	0	0	0	0	0	27278	2789	25832	170869;170870	231196;231197	231196			2	
KFPASNISVNDATSSEEK	2	Unmodified	1922.9222	0.92215019	2210	Q03468	ERCC6	DNA excision repair protein ERCC-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		40.915	39.896	3	1.365E-07	35007	160511_QHF_FH_JSI11i_3	118.48	102.54			1.0504	0.96794	12.092	3	0	Plateau	1.1436	0.92565	NaN	1	0	Median	0.67445	0.77047	NaN	1	0	Median	1.0504	0.96794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131450000	63674000	67776000	43638000	21168000	22470000	36474000	18295000	18179000	51337000	24210000	27127000	0	0	0	27279	2210	25833	170871;170872;170873	231198;231199;231200;231201;231202	231198			5	
KFPAVETR	1	Unmodified	946.52362	0.52361577	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			21.913	20.709	3	0.0086604	16661	160511_QHF_FH_JSI9i_3	43.442	28.182			3.1929	3.7197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.1929	3.7197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62395000	12351000	50045000	0	0	0	62395000	12351000	50045000	0	0	0	0	0	0	27280	5507	25834	170874;170875	231203;231204	231204			2	
KFPFCDGAHTK	2	Unmodified	1306.6128	0.61284149	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							2	2	2	4	26.47	25.865	3;4	1.3202E-05	20908	160511_QHF_FH_JSI12i_3	82.069	76.585			1.3022	1.164	30.791	9	1	Median	1.4083	1.1526	5.0717	2	0	Median	0.98688	1.1338	3.7187	2	0	Median	1.0644	0.97979	35.066	2	0	Median	1.5114	1.5395	54.712	3	1	Plateau	1281600000	641730000	639850000	210300000	100030000	110280000	330490000	194210000	136290000	263940000	129160000	134780000	476840000	218330000	258500000	27281	5144	25835	170876;170877;170878;170879;170880;170881;170882;170883;170884;170885	231205;231206;231207;231208;231209;231210;231211;231212;231213;231214;231215;231216;231217	231213			12	
KFPFSEFVPK	2	Unmodified	1224.6543	0.6542956	5513	Q9Y2D4	EXOC6B	Exocyst complex component 6B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.667	70.369	3	0.0010409	61013	160511_QHF_FH_JSI12i_3	64.439	55.117			1.7854	1.8044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7854	1.8044	NaN	1	1	Median	35365000	14907000	20459000	0	0	0	0	0	0	0	0	0	35365000	14907000	20459000	27282	5513	25836	170886	231218	231218			1	
KFPHLAEAQK	2	Unmodified	1167.64	0.64004252	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							3	1			24.665	23.356	2;3	0.0021845	18664	160511_QHF_FH_JSI9i_3	49.5	44.805			1.0132	0.97879	45.791	4	2	Median	1.2126	0.97152	55.776	3	1	Median	0.84656	0.98612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	326850000	166110000	160740000	205130000	93594000	111530000	121720000	72512000	49209000	0	0	0	0	0	0	27283	4871	25837	170887;170888;170889;170890	231219;231220;231221;231222	231220			4	
KFPHLAEAQK	2	Acetyl (K)	1209.6506	0.6506072	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		43.385	33.765	3	0.057258	18510	160513_QHF_FH_JSI11Kac_6	32.127	17.443			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27284	4871	25837	170891	231223	231223			1	
KFPTTATK	2	Unmodified	892.50182	0.5018177	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	11.701	11.351	2;3	0.0036217	8777	160511_QHF_FH_JSI9i_3	67.897	31.328			0.94385	0.90464	6.3538	8	0	Median	1.1276	0.90429	0.94266	2	0	Median	0.82876	0.94349	6.8336	2	0	Median	1.0741	0.99628	3.1122	2	0	Median	0.85318	0.86492	2.6257	2	0	Median	1350100000	705490000	644570000	396910000	198290000	198620000	253290000	136610000	116680000	272270000	139120000	133150000	427590000	231480000	196120000	27285	227	25838	170892;170893;170894;170895;170896;170897;170898;170899	231224;231225;231226;231227;231228;231229	231228			6	
KFPVDLR	1	Unmodified	873.50724	0.50723743	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		40.101	39.087	3	0.016545	34056	160511_QHF_FH_JSI11i_3	38.792	15.772			0.99979	1.1649	31.999	3	2	Plateau	2.7593	2.2075	NaN	1	1	Median	0.99979	1.1649	NaN	1	0	Median	1.7987	1.6478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114850000	42011000	72835000	58517000	16048000	42470000	28188000	16648000	11540000	28140000	9315100	18825000	0	0	0	27286	3858	25839	170900;170901;170902;170903	231230;231231;231232;231233;231234	231231			5	
KFPVFKAVSFK	3	Acetyl (K)	1338.77	0.76999406	804	P04080	CSTB	Cystatin-B	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.316	68.913	3	0.00010513	36152	160513_QHF_FH_JSI12Kac_6	93.345	62.456			0.95207	0.90705	134.63	4	2	Median	1.4196	1.2193	NaN	1	1	Median	7.2859	8.4316	NaN	1	1	Median	0.40341	0.38051	NaN	1	0	Median	0.63853	0.67478	NaN	1	0	Median	281790000	154700000	127090000	23026000	12586000	10441000	52068000	7991000	44077000	153460000	102430000	51029000	53238000	31694000	21544000	27287	804	25840	170904;170905;170906;170907	231235;231236;231237;231238;231239;231240	231239	435		6	
KFPVTENSK	2	Unmodified	1048.5553	0.55530983	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	15.23	14.749	2;3	7.6962E-06	11923	160511_QHF_FH_JSI11i_3	101.65	93.721			1.1253	1.0167	12.243	8	1	Median	1.1617	0.94073	6.087	2	0	Median	0.77962	0.91014	0.030162	2	0	Median	1.2112	1.1364	7.7916	2	0	Median	1.1053	1.1329	10.409	2	1	Median	2607900000	1319700000	1288200000	548200000	255550000	292650000	541330000	304280000	237050000	660160000	309690000	350470000	858200000	450180000	408020000	27288	1566	25841	170908;170909;170910;170911;170912;170913;170914;170915	231241;231242;231243;231244;231245;231246;231247;231248;231249;231250;231251	231241			11	
KFQEAVEK	2	Unmodified	977.5182	0.51819605	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	10.828	10.875	2	0.0055448	8522	160511_QHF_FH_JSI11i_3	82.645	53.496			0.8389	0.94954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8389	0.94954	NaN	1	0	Median	128660000	35967000	92696000	0	0	0	0	0	0	55239000	0	55239000	73425000	35967000	37458000	27289	5374	25842	170916;170917	231252;231253;231254	231252			3	
KFQFLMFR	1	Unmodified	1115.595	0.59500658	281	O15360	FANCA	Fanconi anemia group A protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			77.002	70.752	3	0.015013	38708	160513_QHF_FH_JSI10Kac_6	52.716	46.453			0.87267	1.0296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87267	1.0296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30209000	14718000	15491000	0	0	0	30209000	14718000	15491000	0	0	0	0	0	0	27290	281	25843	170918	231255	231255			0	
KFQGENTK	2	Unmodified	950.48214	0.48214489	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	5.2116	4.9463	2;3	0.0005559	2818	160511_QHF_FH_JSI10i_3	72.23	63.367			0.95862	0.89227	28.605	7	0	Median	1.613	1.2998	6.0107	2	0	Median	0.74197	0.86863	0.4098	2	0	Median	1.0671	1.0084	17.298	2	0	Median	0.57432	0.58292	NaN	1	0	Median	1790400000	891930000	898510000	514940000	197300000	317640000	506880000	283340000	223540000	533470000	263190000	270280000	235150000	148090000	87054000	27291	4014	25844	170919;170920;170921;170922;170923;170924;170925	231256;231257;231258;231259;231260;231261;231262	231258			7	
KFQILDFTSPK	2	Unmodified	1322.7234	0.72343779	4546	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.26	69.449	3	4.7747E-06	57356	160511_QHF_FH_JSI9i_3	86.911	74.033			0.77718	0.78516	26.129	4	1	Median	0.69271	0.55221	NaN	1	0	Median	0.83371	0.95194	NaN	1	1	Median	0.72448	0.67014	NaN	1	0	Median	0.89895	0.91993	NaN	1	0	Median	766520000	372810000	393710000	148110000	58220000	89890000	173540000	68512000	105030000	155780000	85362000	70413000	289100000	160720000	128380000	27292	4546	25845	170926;170927;170928;170929	231263;231264;231265;231266;231267;231268;231269	231267			7	
KFQPMNK	2	Unmodified	891.46366	0.46365805	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				11.336	10.625	2;3	0.026836	8148	160511_QHF_FH_JSI9i_3	31.289	15.85			0.80538	0.65969	14.711	2	0	Median	0.80538	0.65969	14.711	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277010000	132380000	144620000	277010000	132380000	144620000	0	0	0	0	0	0	0	0	0	27293	518	25846	170930;170931	231270;231271;231272	231272			3	
KFQQQILAQQK	2	Unmodified	1358.767	0.76703394	4677	Q9H2K8	TAOK3	Serine/threonine-protein kinase TAO3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.757	25.402	3	0.017008	20581	160511_QHF_FH_JSI9i_3	31.597	18.197			0.81352	0.67159	NaN	1	0	Median	0.81352	0.67159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32007000	14594000	17413000	32007000	14594000	17413000	0	0	0	0	0	0	0	0	0	27294	4677	25847	170932	231273	231273			1	
KFQSLMSEK	2	Unmodified	1096.5587	0.55868065	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.368	25.013	2	0.010135	20262	160511_QHF_FH_JSI9i_3	64.04	41.954			3.3848	2.7437	NaN	1	1	Median	3.3848	2.7437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25874000	6362300	19512000	25874000	6362300	19512000	0	0	0	0	0	0	0	0	0	27295	2574	25848	170933	231274	231274			1	
KFSAHYDAVEAELK	2	Unmodified	1606.7991	0.79912193	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			46.101	44.509	3	0.00040974	36371	160511_QHF_FH_JSI9i_3	50.608	38.048			1.1197	0.92501	8.0131	3	1	Plateau	1.1746	0.94716	3.4905	2	0	Median	0.9586	1.0809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100570000	40278000	60294000	71675000	26206000	45469000	28897000	14072000	14825000	0	0	0	0	0	0	27296	2529	25849	170934;170935;170936	231275;231276;231277;231278	231276			4	
KFSEDFGQES	1	Unmodified	1172.4986	0.49858282	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		32.196	31.807	2	0.052762	27020	160511_QHF_FH_JSI11i_2	35.224	33.841			1.2086	1.1616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2086	1.1616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17218000	8383400	8834200	0	0	0	0	0	0	17218000	8383400	8834200	0	0	0	27297	5432	25850	170937	231279	231279			1	
KFSLDDLLTNVMLYWTTGTIISSQR	1	Unmodified	2901.4946	0.49463042	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.99	96.272	3	3.4277E-65	56873	160513_QHF_FH_JSI10Kac_6	201.63	189.69			0.58737	0.70474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58737	0.70474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	476160000	278130000	198030000	0	0	0	476160000	278130000	198030000	0	0	0	0	0	0	27298	862	25851	170938	231280;231281	231280			2	
KFSNQETSVEIGESVR	1	Unmodified	1808.8905	0.89045614	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				39.672	38.16	3	1.0001E-05	31125	160511_QHF_FH_JSI9i_3	88.19	73.035			1.1983	0.97924	NaN	1	0	Median	1.1983	0.97924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27267000	12358000	14909000	27267000	12358000	14909000	0	0	0	0	0	0	0	0	0	27299	1008	25852	170939	231282	231282			1	
KFSNQYK	2	Unmodified	913.46577	0.46576654	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	7.7792	7.4668	2;3	0.011814	5237	160511_QHF_FH_JSI9i_3	43.124	24.029			0.88703	1.0056	37.413	7	1	Median	1.3022	1.0452	1.2453	2	0	Median	0.87109	0.99246	1.8582	2	0	Median	0.9141	0.87108	59.16	2	1	Median	0.46154	0.46689	NaN	1	0	Median	4014100000	2056600000	1957500000	1398500000	562740000	835710000	1372400000	793030000	579380000	914410000	523220000	391190000	328840000	177650000	151200000	27300	1728	25853	170940;170941;170942;170943;170944;170945;170946	231283;231284;231285;231286;231287;231288	231286			6	
KFSNQYK	2	Acetyl (K)	955.47633	0.47633123	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		20.901	11.745	2	0.046552	8105	160513_QHF_FH_JSI11Kac_6	73.616	39.878			0.023482	0.022951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.023482	0.022951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6112500	5766200	346340	0	0	0	0	0	0	6112500	5766200	346340	0	0	0	27301	1728	25853	170947	231289	231289			1	
KFTEDFGQEG	1	Unmodified	1156.5037	0.50366819	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		34.693	33.889	2	0.032974	29443	160511_QHF_FH_JSI9i_2	39.305	31.084			1.0347	1.021	21.338	3	1	Median	1.2936	1.1422	NaN	1	0	Median	0.62015	0.75598	NaN	1	1	Median	1.0347	1.021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138690000	60426000	78264000	46106000	15123000	30983000	37851000	19333000	18518000	54733000	25971000	28763000	0	0	0	27302	507	25854	170948;170949;170950	231290;231291;231292	231290			3	
KFTFGLDWVPK	2	Unmodified	1336.718	0.71795849	1573;3920	P45974;Q92995	USP5;USP13	Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	2	3	4	83.202	79.325	2;3	4.5696E-06	69982	160511_QHF_FH_JSI10i_3	89.403	70.161			0.96536	0.90888	21.956	12	2	Median	0.96507	0.77189	23.459	3	1	Median	0.86605	1.0115	17.122	2	0	Median	0.99107	0.82327	9.5043	3	0	Plateau	1.0191	1.0503	10.722	4	1	Median	2605600000	1300700000	1304900000	338910000	164630000	174280000	440140000	237290000	202850000	633920000	326520000	307400000	1192600000	572240000	620410000	27303	1573;3920	25855	170951;170952;170953;170954;170955;170956;170957;170958;170959;170960;170961;170962	231293;231294;231295;231296;231297;231298;231299;231300;231301;231302;231303;231304;231305;231306;231307;231308;231309;231310;231311;231312;231313;231314;231315;231316;231317;231318;231319	231300			27	
KFTNSLTTVGSNK	2	Unmodified	1395.7358	0.73579339	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		27.031	26.361	3	5.1987E-05	21840	160511_QHF_FH_JSI10i_3	64.104	43.44			1.0008	0.96111	78.189	4	3	Median	0.9983	0.81232	NaN	1	1	Median	1.0032	1.1372	NaN	1	0	Median	0.75344	0.71348	129.95	2	2	Median	NaN	NaN	NaN	0	0	Median	299050000	173220000	125830000	80761000	39440000	41320000	108320000	70974000	37341000	109970000	62806000	47169000	0	0	0	27304	3420	25856	170963;170964;170965;170966	231320;231321;231322;231323;231324	231322			5	
KFTQVLEDDEK	2	Unmodified	1350.6667	0.66671078	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		30.693	29.771	2	0.00017301	25548	160511_QHF_FH_JSI11i_3	99.215	54.054			0.60621	0.50821	37.11	3	3	Median	0.60621	0.50821	NaN	1	1	Median	0.28278	0.3139	NaN	1	1	Median	0.6974	0.65125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80808000	49877000	30931000	19041000	12936000	6104500	20431000	15185000	5245500	41337000	21756000	19581000	0	0	0	27305	4988	25857	170967;170968;170969;170970	231325;231326;231327;231328	231325			4	
KFTTDDSICVLGISK	2	Unmodified	1682.8549	0.85492225	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	64.631	64.216	2;3	3.7562E-07	53824	160511_QHF_FH_JSI10i_3	90.146	73.892			0.79297	0.89928	28.268	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77339	0.89928	NaN	1	0	Median	0.743	0.69708	5.533	2	0	Median	1.2061	1.2216	3.6413	2	0	Median	920130000	432950000	487180000	0	0	0	75959000	39951000	36008000	223290000	116410000	106880000	620870000	276590000	344290000	27306	2176	25858	170971;170972;170973;170974;170975;170976;170977	231329;231330;231331;231332;231333;231334;231335;231336;231337;231338;231339;231340	231336			12	
KFTVTVTMR	1	Oxidation (M)	1097.5903	0.59031513	2347	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By matching	16	0									5	2	2		1	34.692	25.927	3	0.01382	14255	160513_QHF_FH_JSI9Kac_6	34.755	31.567			0.85117	0.93531	15.554	5	0	Median	1.0408	0.86439	11.15	2	0	Median	0.82416	0.98338	5.2881	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61405	0.69344	NaN	1	0	Median	29258000	16580000	12677000	11844000	6641000	5203000	14634000	8350500	6283500	0	0	0	2779600	1588900	1190700	27307	2347	25859	170978;170979;170980;170981;170982	231341;231342	231341		1925	1	
KFTYLGSQDR	1	Acetyl (K)	1255.6197	0.619701	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		49.688	39.084	2	0.040875	21904	160513_QHF_FH_JSI11Kac_5	56.432	39.655			0.13414	0.13076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13414	0.13076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2050600	1817900	232760	0	0	0	0	0	0	2050600	1817900	232760	0	0	0	27308	3250	25860	170983	231343	231343			1	
KFVADGIFK	2	Unmodified	1023.5753	0.57531699	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS			By matching	3	0			2							1			1	48.518	47.596	2	0.033453	39005	160511_QHF_FH_JSI9i_3	39.547	14.728			1.3291	1.197	1.6936	2	0	Median	1.4569	1.1828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2125	1.2114	NaN	1	0	Median	107800000	43019000	64777000	78000000	31186000	46814000	0	0	0	0	0	0	29795000	11832000	17963000	27309	1227	25861	170984;170985	231344;231345	231344			2	
KFVCPGINVK	2	Unmodified	1160.6376	0.63759967	5364	Q9UKD1;Q9Y692	GMEB2;GMEB1	Glucocorticoid modulatory element-binding protein 2;Glucocorticoid modulatory element-binding protein 1	yes	no	0	0	0	1				By MS/MS	3	0			1										1	37.269	37.106	3	0.053352	31563	160511_QHF_FH_JSI12i_3	23.378	9.2919			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6678300	6678300	0	0	0	0	0	0	0	0	0	0	6678300	6678300	0	27310	5364	25862	170986	231346	231346			1	
KFVEEQHTK	2	Unmodified	1144.5877	0.58767259	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	6.193	6	2;3	5.9301E-07	3759	160511_QHF_FH_JSI11i_3	137.95	116.98			1.0439	0.96568	37.867	7	1	Median	1.4957	1.2204	13.048	2	1	Median	0.52166	0.60667	NaN	1	0	Median	1.2378	1.1567	25.528	2	0	Median	0.59938	0.60637	0.81283	2	0	Median	2413400000	1123800000	1289600000	172920000	64268000	108650000	333140000	160920000	172220000	968760000	373120000	595640000	938580000	525460000	413120000	27311	3961	25863	170987;170988;170989;170990;170991;170992;170993	231347;231348;231349;231350;231351;231352;231353;231354;231355;231356	231349			10	
KFVETPGQK	2	Unmodified	1032.5604	0.56039521	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.06		1	8						2	2	4	2	3	15.652	13.977	2;3	0.00017234	10717	160511_QHF_FH_JSI12i_3	87.639	57.473			0.96211	1.0523	19.701	11	0	Median	1.4722	1.1865	0.20719	2	0	Median	0.94007	1.0856	11.121	4	0	Median	1.0348	0.98508	1.8644	2	0	Median	0.6546	0.68637	25.31	3	0	Plateau	3709400000	2076400000	1633000000	804450000	408520000	395920000	953000000	464340000	488660000	846760000	507100000	339660000	1105200000	696420000	408800000	27312	840	25864	170994;170995;170996;170997;170998;170999;171000;171001;171002;171003;171004	231357;231358;231359;231360;231361;231362;231363;231364;231365;231366;231367;231368;231369;231370;231371;231372;231373;231374;231375	231371			18	
KFVEWLK	2	Unmodified	948.54329	0.54328858	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							4	2	2	1	48.681	47.658	2;3	0.0030882	40245	160511_QHF_FH_JSI10i_3	65.252	54.379			0.87465	0.8437	33.754	8	4	Median	1.2728	1.0292	45.054	3	2	Median	0.56033	0.65698	23.083	2	1	Median	0.96679	0.91637	23.016	2	1	Median	0.88434	0.91408	NaN	1	0	Median	2616500000	1213100000	1403400000	747470000	275590000	471880000	417370000	230040000	187330000	1001600000	568150000	433450000	450030000	139290000	310740000	27313	3218	25865	171005;171006;171007;171008;171009;171010;171011;171012;171013	231376;231377;231378;231379;231380;231381;231382;231383;231384;231385;231386;231387;231388;231389;231390	231381			15	
KFVIKPIDK	3	Unmodified	1086.6801	0.68011642	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			15							3	4	3	5	33.756	33.136	2;3;4	0.0029128	25595	160511_QHF_FH_JSI10i_3	68.893	39.42			0.37101	0.38083	45.271	12	12	Median	0.34401	0.27251	25.259	3	3	Median	0.40455	0.46033	5.3822	2	2	Median	0.16878	0.15854	85.914	3	3	Plateau	0.37101	0.38083	31.773	4	4	Median	12400000000	7004100000	5396100000	4131700000	1923000000	2208700000	3110800000	1590000000	1520800000	1888000000	1392600000	495380000	3269700000	2098500000	1171200000	27314	1073;1426;1270	25866	171014;171015;171016;171017;171018;171019;171020;171021;171022;171023;171024;171025;171026;171027;171028	231391;231392;231393;231394;231395;231396;231397;231398;231399;231400;231401;231402;231403;231404;231405;231406;231407;231408	231396			18	
KFVLLSAQGSLMFHK	2	Unmodified	1704.9385	0.93853272	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			76.056	68.941	3;4	0.00010745	37795	160513_QHF_FH_JSI10Kac_6	80.632	70.832			0.63567	0.55058	40.366	3	2	Median	0.63567	0.55058	NaN	1	1	Median	0.65094	0.77582	49.747	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197960000	99470000	98494000	46736000	28973000	17763000	151230000	70497000	80731000	0	0	0	0	0	0	27315	558	25867	171029;171030;171031	231409;231410;231411	231410			3	
KFVSGQK	2	Unmodified	792.44939	0.4493882	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.5081	5.2772	2	0.018254	3106	160511_QHF_FH_JSI11i_3	60.682	40.127			0.76814	0.80123	24.012	4	0	Median	1.2245	0.98951	NaN	1	0	Median	0.63483	0.73809	NaN	1	0	Median	0.92944	0.86977	NaN	1	0	Median	0.55524	0.56707	NaN	1	0	Median	5372400000	2526800000	2845600000	2185800000	809270000	1376500000	1174700000	596270000	578470000	843430000	294140000	549290000	1168500000	827160000	341320000	27316	1216	25868	171032;171033;171034;171035	231412;231413;231414;231415;231416	231412			5	
KFVTDSNAVVQLK	2	Unmodified	1447.8035	0.80347903	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	47.01	46.263	2;3	0.00014364	40810	160511_QHF_FH_JSI11i_3	98.353	73.562			0.9293	1.0398	25.251	7	1	Median	1.4898	1.2066	NaN	1	0	Median	0.67448	0.78983	38.882	2	1	Median	1.2652	1.185	8.9692	2	0	Median	0.8911	0.90665	5.2188	2	0	Median	385870000	197750000	188110000	25572000	9536000	16036000	65374000	40439000	24935000	104060000	41609000	62454000	190860000	106170000	84688000	27317	2485	25869	171036;171037;171038;171039;171040;171041;171042	231417;231418;231419;231420;231421;231422;231423;231424;231425;231426	231417			10	
KFYEAFSK	2	Unmodified	1018.5124	0.51238239	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.18	3.74			10						1	4	3	2	2	30.616	29.038	2;3	0.0012664	23959	160511_QHF_FH_JSI12i_3	66.299	54.24			1.047	0.99653	48.041	11	5	Median	0.86068	0.73106	68.642	4	3	Median	0.88999	1.0385	49.828	3	2	Median	0.84277	0.80235	30.652	2	0	Median	1.2601	1.2742	10.387	2	0	Median	2733400000	1322600000	1410800000	1003000000	469950000	533090000	552510000	312820000	239680000	316330000	162310000	154020000	861560000	377530000	484030000	27318	898	25870	171043;171044;171045;171046;171047;171048;171049;171050;171051;171052;171053	231427;231428;231429;231430;231431;231432;231433;231434;231435;231436;231437;231438;231439;231440	231440			14	
KFYEAFSK	2	Acetyl (K)	1060.5229	0.52294707	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	1	2	1	2	54.704	44.986	2	0.010178	24326	160513_QHF_FH_JSI11Kac_6	101.65	74.392			1.0468	0.8848	154.67	5	3	Median	1.0468	0.8848	NaN	1	0	Median	1.956	2.3503	NaN	1	1	Median	0.27622	0.26274	NaN	1	0	Median	0.56101	0.58985	265.17	2	2	Median	224420000	141540000	82881000	10784000	5113000	5670900	41756000	17929000	23827000	130090000	95063000	35031000	41784000	23432000	18352000	27319	898	25870	171054;171055;171056;171057;171058;171059	231441;231442;231443;231444;231445	231441	650;652		5	
KFYEQFSK	2	Unmodified	1075.5338	0.53384611	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	25.923	25.258	2;3	0.003564	20793	160511_QHF_FH_JSI12i_3	72.042	53.639			0.84413	0.92202	42.785	6	2	Median	1.6597	1.3345	NaN	1	0	Median	1.0129	1.1842	10.959	2	1	Median	0.4591	0.42934	NaN	1	1	Median	0.74752	0.7663	1.7336	2	0	Median	1617400000	755700000	861690000	270520000	78433000	192080000	502770000	253330000	249440000	133990000	81494000	52496000	710120000	342440000	367670000	27320	880	25871	171060;171061;171062;171063;171064;171065	231446;231447;231448;231449;231450;231451	231451			6	
KFYEQFSK	2	Acetyl (K)	1117.5444	0.5444108	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	2	1	50.663	40.368	2	0.007834	22450	160513_QHF_FH_JSI11Kac_5	104.2	82.672			0.36874	0.38022	86.871	4	1	Median	NaN	NaN	NaN	0	0	Median	0.96394	1.1524	NaN	1	0	Median	0.21038	0.20566	44.355	2	1	Median	0.47415	0.5137	NaN	1	0	Median	178670000	118690000	59980000	0	0	0	29830000	15438000	14392000	126560000	88856000	37705000	22283000	14399000	7883400	27321	880	25871	171066;171067;171068;171069	231452;231453;231454	231454	606;612		3	
KFYPLEIDYGQDEEAVK	2	Unmodified	2042.9837	0.98368782	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							2	4	4	3	69.993	69.245	2;3	5.5169E-11	61645	160511_QHF_FH_JSI11i_3	144.97	140.42			0.8319	0.93518	16.923	10	4	Median	1.3861	1.1595	6.6312	2	0	Median	0.82451	0.98243	7.6362	4	2	Median	0.88918	0.82778	5.0219	2	1	Median	0.76799	0.75608	8.8752	2	1	Median	895170000	479560000	415620000	78423000	31789000	46633000	213500000	125780000	87715000	357100000	183340000	173750000	246160000	138640000	107520000	27322	939	25872	171070;171071;171072;171073;171074;171075;171076;171077;171078;171079;171080;171081;171082	231455;231456;231457;231458;231459;231460;231461;231462;231463;231464;231465;231466;231467;231468;231469;231470;231471;231472;231473;231474;231475;231476	231458			22	
KGAAIPAK	2	Unmodified	754.47012	0.47012364	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.4	0.49		3	2							1	2	1	1	7.1481	6.8455	2	0.030635	4283	160511_QHF_FH_JSI12i_3	41.652	9.1819			0.91613	1.103	25.813	5	0	Median	1.8407	1.5546	NaN	1	0	Median	0.8396	0.99605	17.208	2	0	Median	1.0828	1.103	NaN	1	0	Median	0.78004	0.79748	NaN	1	0	Median	2307900000	1312500000	995430000	94216000	31133000	63083000	991810000	601310000	390500000	23344000	12356000	10988000	1198500000	667660000	530850000	27323	1154	25873	171083;171084;171085;171086;171087	231477;231478;231479	231479			3	
KGATPGK	2	Acetyl (K)	699.39154	0.39153897	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1	By MS/MS			By MS/MS	13	0						3				2			1	11.679	-0.8023	2	0.0074952	5157	160513_QHF_FH_JSI9Kac_3	93.374	42.408			9.6774	9.0291	387.31	2	1	Median	164.51	139.65	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56927	0.58376	NaN	1	0	Median	896710000	321940000	574770000	373390000	2363300	371030000	0	0	0	0	0	0	523320000	319570000	203740000	27324	1154	25874	171088;171089;171090	231480;231481;231482	231481	1015;1017		3	
KGAVAEDGDELRTEPEAK	2	Unmodified	1913.933	0.93304923	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		21.34	20.679	3;4	7.5935E-06	17275	160511_QHF_FH_JSI11i_3	97.058	81.292			1.1082	1.0683	12.529	6	1	Median	1.2182	1.0747	3.9831	2	1	Median	0.83541	0.99929	12.592	2	0	Median	1.2142	1.1506	20.292	2	0	Median	NaN	NaN	NaN	0	0	Median	424660000	215260000	209400000	53704000	24345000	29359000	95026000	47443000	47583000	275930000	143470000	132460000	0	0	0	27325	1294	25875	171091;171092;171093;171094;171095;171096	231483;231484;231485;231486;231487;231488;231489;231490;231491;231492	231484			10	
KGDAASLR	1	Unmodified	816.44537	0.44536545	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		5.1023	4.7768	2	0.018219	2597	160511_QHF_FH_JSI11i_3	48.157	8.8334			0.88556	0.96869	27.268	3	0	Plateau	1.8743	1.5248	NaN	1	0	Median	0.75584	0.88416	NaN	1	0	Median	1.2425	1.1818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	675980000	296980000	379000000	142700000	51774000	90930000	283700000	141430000	142270000	249580000	103780000	145800000	0	0	0	27326	3736	25876	171097;171098;171099	231493	231493			1	
KGDECELLGHSK	2	Unmodified	1371.6453	0.64526383	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	14.8	14.482	2;3	2.7518E-05	10986	160511_QHF_FH_JSI12i_3	76.262	76.262			0.69127	0.74871	38.806	7	3	Median	1.5862	1.4025	NaN	1	1	Median	0.77468	0.90171	26.296	2	2	Median	0.60584	0.58756	52.172	2	0	Median	0.69066	0.71276	3.9715	2	0	Median	1685000000	971150000	713820000	30800000	11626000	19175000	95599000	60885000	34714000	679390000	357270000	322130000	879180000	541370000	337800000	27327	1658	25877	171100;171101;171102;171103;171104;171105;171106	231494;231495;231496;231497;231498;231499;231500;231501;231502;231503	231502			10	
KGDEYIINGQK	2	Unmodified	1263.6459	0.64591575	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.42	3.52		7	4					1		2	2	5	3	20.07	18.86	2;3	1.7442E-05	15183	160511_QHF_FH_JSI12i_3	77.062	60.713			0.8641	0.86638	28.619	12	1	Median	1.2587	1.0623	2.8404	2	0	Median	0.64989	0.78533	5.3056	2	0	Median	1.0092	0.95694	36.16	5	1	Median	0.82076	0.81892	24.65	3	0	Plateau	1331800000	772630000	559210000	129690000	60474000	69216000	218130000	154910000	63226000	384740000	177340000	207400000	599270000	379910000	219360000	27328	997	25878	171107;171108;171109;171110;171111;171112;171113;171114;171115;171116;171117;171118	231504;231505;231506;231507;231508;231509;231510;231511;231512;231513;231514;231515;231516;231517;231518;231519	231519			16	
KGDIFLVR	1	Unmodified	946.56	0.56000128	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		2	8						4	4	4	3	3	40.894	37.648	2;3	0.0017311	32665	160511_QHF_FH_JSI11i_3	60.436	33.182			0.92663	1.0136	43.93	14	0	Median	1.7299	1.4146	35.583	4	0	Median	0.64518	0.77232	10.675	4	0	Median	1.2607	1.1846	10.996	3	0	Median	0.61378	0.60024	11.033	3	0	Plateau	4290900000	2297000000	1993900000	1023500000	361310000	662160000	1015900000	622370000	393500000	1454300000	780860000	673450000	797220000	532440000	264780000	27329	1846	25879	171119;171120;171121;171122;171123;171124;171125;171126;171127;171128;171129;171130;171131;171132	231520;231521;231522;231523;231524;231525;231526;231527;231528;231529;231530;231531;231532;231533;231534;231535;231536;231537;231538;231539;231540;231541;231542;231543;231544;231545;231546;231547;231548	231522			27	
KGDIIQLQR	1	Unmodified	1069.6244	0.62439245	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							3	4	2		27.205	26.29	2;3	0.00014441	22207	160511_QHF_FH_JSI11i_3	99.815	56.007			0.8837	1.0963	28.544	9	1	Median	1.846	1.5061	11.95	3	1	Plateau	0.81393	0.9405	8.2142	4	0	Median	1.0491	0.99359	31.231	2	0	Median	NaN	NaN	NaN	0	0	Median	2305100000	1145600000	1159500000	757810000	272030000	485790000	901560000	468360000	433200000	645680000	405170000	240510000	0	0	0	27330	878	25880	171133;171134;171135;171136;171137;171138;171139;171140;171141	231549;231550;231551;231552;231553;231554;231555;231556;231557;231558;231559;231560;231561;231562;231563	231550			15	
KGDILTLLNSTNK	2	Unmodified	1415.7984	0.79839365	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	62.948	62.125	2;3	1.6648E-05	51100	160511_QHF_FH_JSI9i_3	103.76	89.075			0.92918	0.96346	39.1	8	2	Median	1.411	1.1449	0.96002	2	0	Median	0.75313	0.85654	8.5217	2	0	Median	1.2442	1.1669	18.981	2	1	Median	0.45989	0.4824	9.1103	2	1	Median	980560000	473040000	507520000	177970000	71121000	106850000	189200000	102270000	86927000	361120000	155670000	205460000	252270000	143980000	108290000	27331	2470	25881	171142;171143;171144;171145;171146;171147;171148;171149	231564;231565;231566;231567;231568;231569;231570;231571;231572;231573	231569			10	
KGDIVDIK	2	Unmodified	886.51238	0.51238239	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.49	1	8	7					4	1	5	4	6	6	23.009	20.38	2;3	0.0056398	17082	160511_QHF_FH_JSI12i_2	65.305	23.196			0.86731	0.90776	52.176	21	3	Median	1.4101	1.17	43.177	5	0	Median	0.69824	0.83031	48.531	4	1	Median	1.0128	1.0016	15.425	6	0	Median	0.46802	0.50094	68.212	6	2	Median	9806900000	5358000000	4448900000	1145500000	420030000	725510000	1260500000	822650000	437900000	3477500000	1541200000	1936200000	3923300000	2574100000	1349300000	27332	1591	25882	171150;171151;171152;171153;171154;171155;171156;171157;171158;171159;171160;171161;171162;171163;171164;171165;171166;171167;171168;171169;171170	231574;231575;231576;231577;231578;231579;231580;231581;231582;231583;231584;231585;231586;231587;231588;231589;231590;231591;231592;231593;231594;231595;231596;231597;231598;231599;231600	231580			27	
KGDLLLNR	1	Unmodified	927.55016	0.55016488	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		22.273	21.317	2	0.0044139	17181	160511_QHF_FH_JSI9i_3	88.948	44.501			0.99624	0.95902	42.514	4	2	Median	1.721	1.4228	51.648	2	2	Median	0.79807	0.93134	NaN	1	0	Median	0.83014	0.78324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1137600000	482720000	654870000	626500000	222210000	404290000	235830000	139240000	96587000	275260000	121260000	154000000	0	0	0	27333	2598	25883	171171;171172;171173;171174	231601;231602;231603;231604;231605	231604			5	
KGDLLNAHYDGYLAK	2	Unmodified	1676.8522	0.85222014	5710	Q9Y680	FKBP7	Peptidyl-prolyl cis-trans isomerase FKBP7	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	47.31	47.189	3	0.0006812	41683	160511_QHF_FH_JSI11i_3	64.507	47.842			0.38981	0.37731	6.9346	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38388	0.35926	NaN	1	1	Median	0.39582	0.39627	NaN	1	1	Median	264320000	184820000	79497000	0	0	0	0	0	0	141530000	101790000	39741000	122790000	83031000	39756000	27334	5710	25884	171175;171176	231606;231607	231606			2	
KGDLSVEEVMK	2	Unmodified	1233.6275	0.6274885	3971	Q96AT1	KIAA1143	Uncharacterized protein KIAA1143	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.635	38.455	2	0.0010312	32788	160511_QHF_FH_JSI12i_3	76.143	45.888			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27335	3971	25885	171177	231608	231608			1	
KGDNLQPVTLILSK	2	Unmodified	1524.8875	0.88754301	2995	Q5VWN6	FAM208B	Protein FAM208B	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				102.9	93.703	2	0.012587	54234	160513_QHF_FH_JSI9Kac_6	57.836	15.835			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27336	2995	25886	171178	231609	231609			1	
KGDPVYVYYK	2	Unmodified	1230.6285	0.62847478	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	31.127	31.049	2	0.0078464	26238	160511_QHF_FH_JSI12i_3	66.595	36.341			0.51996	0.52869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51996	0.52869	NaN	1	1	Median	41616000	25252000	16363000	0	0	0	0	0	0	0	0	0	41616000	25252000	16363000	27337	2899	25887	171179	231610	231610			1	
KGDSSAEELK	2	Unmodified	1062.5193	0.51931826	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.37	7	8	7				4	3		5	8	8	8	6.697	4.3616	2;3	3.02E-06	3615	160511_QHF_FH_JSI12i_3	117.14	62.154			0.88834	0.89179	32.67	29	2	Median	1.6219	1.34	14.126	5	0	Median	0.91621	1.0712	8.5914	8	0	Median	0.89859	0.85651	9.9297	8	0	Median	0.55758	0.59667	19.688	8	2	Median	21209000000	10681000000	10528000000	2921600000	1020300000	1901400000	4998700000	2471300000	2527400000	6849500000	3442400000	3407000000	6439200000	3747200000	2692000000	27338	1275	25888	171180;171181;171182;171183;171184;171185;171186;171187;171188;171189;171190;171191;171192;171193;171194;171195;171196;171197;171198;171199;171200;171201;171202;171203;171204;171205;171206;171207;171208	231611;231612;231613;231614;231615;231616;231617;231618;231619;231620;231621;231622;231623;231624;231625;231626;231627;231628;231629;231630;231631;231632;231633;231634;231635;231636;231637;231638;231639;231640;231641;231642;231643;231644;231645;231646;231647;231648;231649;231650;231651;231652;231653;231654;231655;231656	231653			42	
KGDTIYNTR	1	Unmodified	1066.5407	0.5407224	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		8.8718	8.4785	2	0.0035477	6173	160511_QHF_FH_JSI11i_3	60.102	45.237			0.93845	0.90957	36.49	3	0	Plateau	2.1956	1.7807	NaN	1	0	Median	0.86306	1.0271	NaN	1	0	Median	0.93845	0.89288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	240360000	117100000	123260000	39153000	10594000	28559000	92959000	47258000	45702000	108250000	59246000	48999000	0	0	0	27339	4221	25889	171209;171210;171211	231657;231658	231657			2	
KGDTVYILR	1	Unmodified	1063.6026	0.60259438	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			30.899	29.523	2;3	0.0024329	24518	160511_QHF_FH_JSI10i_3	53.751	33.051			1.6383	1.6028	50.861	2	1	Median	2.7544	2.2966	NaN	1	1	Median	0.97446	1.1187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33279000	11881000	21398000	13544000	4278300	9266000	19735000	7603000	12132000	0	0	0	0	0	0	27340	616	25890	171212;171213;171214	231659;231660;231661	231660			3	
KGDVEGSQSQDEGEGSGESER	1	Unmodified	2165.8945	0.89449147	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.4716	7.2361	3	1.4811E-18	4896	160511_QHF_FH_JSI11i_1	152.13	148.16			0.61449	0.72316	48.984	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61449	0.72316	NaN	1	1	Median	1.4556	1.3717	NaN	1	0	Median	0.51422	0.52398	NaN	1	0	Median	165270000	96177000	69089000	0	0	0	46736000	30261000	16475000	63148000	30678000	32470000	55382000	35238000	20145000	27341	5479	25891	171215;171216;171217	231662;231663;231664	231662			2	
KGDVVIVLTGWRPGSGFTNTMR	1	Unmodified	2390.2529	0.252884	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By matching	16	0									6	2	3		1	80.032	72.761	2;3;4	4.2466E-10	40330	160513_QHF_FH_JSI10Kac_6	93.583	89.315			0.97184	1.0977	21.537	6	0	Median	1.5323	1.3158	9.9095	2	0	Median	0.75529	0.89999	20.118	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79389	0.84185	NaN	1	0	Median	1755800000	874940000	880860000	467080000	152570000	314510000	1257800000	708990000	548850000	0	0	0	30883000	13378000	17505000	27342	1055	25892	171218;171219;171220;171221;171222;171223	231665;231666;231667;231668;231669;231670;231671;231672	231668			8	
KGDVVIVLTGWRPGSGFTNTMR	1	Oxidation (M)	2406.2478	0.24779863	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	2		By MS/MS			16	0									2		2			77.179	71.113	3;4	6.3573E-11	38843	160513_QHF_FH_JSI10Kac_6	91.583	83.089			0.78433	0.93643	11.151	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78433	0.93643	11.151	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	315750000	179780000	135960000	0	0	0	315750000	179780000	135960000	0	0	0	0	0	0	27343	1055	25892	171224;171225	231673;231674	231674		679	2	
KGDYIEAESSYSR	1	Unmodified	1503.6842	0.68415175	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.668	2	6	3							2	2	4	3	23.96	23.489	2;3	1.1818E-05	19742	160511_QHF_FH_JSI11i_3	112.15	107.08			1.1291	1.0852	41.419	11	0	Median	2.466	2.1661	35.486	2	0	Median	1.0133	1.2539	20.441	2	0	Median	1.1465	1.1251	10.863	4	0	Median	0.94064	0.96742	25.788	3	0	Plateau	484150000	236580000	247580000	47751000	14170000	33581000	76928000	38483000	38445000	213330000	95792000	117530000	146150000	88133000	58018000	27344	4293	25893	171226;171227;171228;171229;171230;171231;171232;171233;171234;171235;171236	231675;231676;231677;231678;231679;231680	231675			6	
KGDYLGK	2	Unmodified	779.41775	0.41775372	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	7.6887	7.7375	2	0.019457	5173	160511_QHF_FH_JSI12i_3	58.815	26.345			0.49617	0.48904	20.103	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60237	0.56374	NaN	1	0	Median	0.40869	0.42424	NaN	1	0	Median	307640000	199520000	108120000	0	0	0	0	0	0	104810000	60433000	44379000	202830000	139090000	63743000	27345	1126	25894	171237;171238	231681;231682;231683	231683			3	
KGEAVPFK	2	Unmodified	874.49125	0.49125301	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	16.003	15.687	2	0.017928	12259	160511_QHF_FH_JSI12i_3	48.423	20.899			1.0074	0.86417	19.672	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0074	1.176	NaN	1	0	Median	1.0688	1.0091	NaN	1	0	Median	0.76661	0.79588	NaN	1	0	Median	219530000	106840000	112690000	0	0	0	18026000	6674100	11352000	84617000	29913000	54703000	116890000	70254000	46634000	27346	1239	25895	171239;171240;171241	231684;231685	231685			2	
KGEDFVK	2	Unmodified	821.42832	0.42831841	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.31		8	5					2		3	2	5	5	10.673	9.0763	2;3	0.0022907	7287	160511_QHF_FH_JSI11i_2	75.109	27.261			1.0216	0.98971	28.984	14	1	Median	1.0633	0.88341	26.813	3	1	Median	1.0561	1.2906	2.9671	2	0	Median	0.97053	0.96549	24.689	5	0	Median	0.82169	0.87026	36.667	4	0	Median	8389900000	4462500000	3927400000	1163600000	520380000	643250000	1604500000	888720000	715770000	2517400000	1213200000	1304200000	3104400000	1840200000	1264200000	27347	1504	25896	171242;171243;171244;171245;171246;171247;171248;171249;171250;171251;171252;171253;171254;171255;171256	231686;231687;231688;231689;231690;231691;231692;231693;231694;231695;231696;231697;231698;231699;231700;231701;231702;231703;231704	231696			19	
KGEDFVKTLK	3	Acetyl (K)	1205.6656	0.66558856	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.707							3	6	3	3	3	3	3	47.902	37.798	2;3	0.004918	21170	160513_QHF_FH_JSI11Kac_5	64.439	37.55			0.86837	0.78893	31.066	12	0	Median	1.3704	1.1585	29.406	3	0	Median	0.87874	1.0583	0.50107	3	0	Plateau	0.65848	0.64979	17.669	3	0	Median	0.56679	0.61591	0.63039	3	0	Median	202750000	110790000	91954000	27786000	12592000	15193000	33048000	19880000	13168000	94800000	52060000	42740000	47115000	26263000	20852000	27348	1504	25897	171257;171258;171259;171260;171261;171262;171263;171264;171265;171266;171267;171268	231705;231706;231707;231708;231709;231710;231711;231712;231713	231708	1528		9	
KGEDVLGSVR	1	Unmodified	1058.572	0.57202253	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	4	1	21.96	21.461	2;3	0.00036217	17902	160511_QHF_FH_JSI11i_3	92.611	71.986			1.7499	1.6448	46.9	8	2	Median	2.0484	1.7471	51.203	2	0	Median	0.71515	0.87176	9.0214	2	0	Median	2.3528	2.2323	30.236	4	2	Median	NaN	NaN	NaN	0	0	Median	492380000	188700000	303680000	80915000	23360000	57556000	123960000	69267000	54698000	287500000	96077000	191420000	0	0	0	27349	1872	25898	171269;171270;171271;171272;171273;171274;171275;171276;171277	231714;231715;231716;231717;231718;231719;231720	231715			7	
KGEEALFTTR	1	Unmodified	1150.5982	0.59823728	4269	Q99442	SEC62	Translocation protein SEC62	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	24.881	24.869	2	0.0017852	21148	160511_QHF_FH_JSI11i_3	75.229	51.461			0.91712	0.89878	26.234	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1448	1.082	NaN	1	0	Median	0.7347	0.74661	NaN	1	0	Median	123600000	74356000	49247000	0	0	0	0	0	0	60395000	38439000	21956000	63208000	35917000	27291000	27350	4269	25899	171278;171279	231721	231721			1	
KGEETEETSSSK	2	Unmodified	1310.5838	0.58376901	5271	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	2.9926	2.6554	3	0.0016435	1329	160511_QHF_FH_JSI10i_1	54.524	38.66			1.018	1.0881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.018	1.0881	NaN	1	1	Median	22826000	7927200	14899000	0	0	0	0	0	0	0	0	0	22826000	7927200	14899000	27351	5271	25900	171280;171281	231722;231723	231723			2	
KGEFETGFEK	2	Unmodified	1170.5557	0.55570376	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.5		6	5					1		1	2	4	5	26.652	25.345	2;3	0.0014453	20950	160511_QHF_FH_JSI12i_3	45.879	38.312			1.1569	1.2413	72.274	12	10	Median	3.5849	3.1292	NaN	1	1	Median	0.88794	1.0842	121.42	2	2	Median	1.8223	1.8217	54.189	4	4	Median	0.66992	0.74063	56.806	5	3	Median	2908000000	1601200000	1306800000	133300000	29177000	104120000	795420000	596880000	198530000	546180000	236070000	310110000	1433100000	739040000	694060000	27352	1069;3467	25901	171282;171283;171284;171285;171286;171287;171288;171289;171290;171291;171292;171293	231724;231725;231726;231727;231728;231729;231730;231731;231732;231733;231734;231735;231736	231734			13	
KGEFETGFEKGGQTR	2	Acetyl (K)	1711.8166	0.81656291	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	1	0	0	2		By MS/MS	By MS/MS		15	0								2			1	1		44.414	34.271	3	0.011316	17767	160513_QHF_FH_JSI10Kac_5	51.591	43.25			0.60735	0.66176	107.08	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1885	1.411	NaN	1	0	Median	0.31036	0.31036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13843000	8149800	5693400	0	0	0	5310300	1979000	3331300	8532900	6170800	2362100	0	0	0	27353	1069;3467	25902	171294;171295	231737	231737	907		1	
KGEFQEVVR	1	Unmodified	1090.5771	0.57710791	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								2	2		19.418	18.92	2;3	9.86E-05	15720	160511_QHF_FH_JSI11i_3	71.451	59.857			1.1911	1.1222	37.348	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0073	1.1976	63.694	2	0	Median	1.1911	1.1222	9.2433	2	0	Median	NaN	NaN	NaN	0	0	Median	235300000	101410000	133890000	0	0	0	51586000	25173000	26413000	183710000	76237000	107480000	0	0	0	27354	5635	25903	171296;171297;171298;171299	231738;231739;231740	231739			3	
KGEGAPIQGK	2	Unmodified	983.53999	0.53999412	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	6.6207	6.4437	2;3	6.6306E-05	4196	160511_QHF_FH_JSI11i_3	93.111	60.27			0.96588	1.0997	34.692	8	1	Median	1.3222	1.131	NaN	1	0	Median	0.71719	0.85838	33.108	2	1	Median	1.2538	1.1828	4.3593	3	0	Median	0.54515	0.55729	8.2793	2	0	Median	1864100000	1024700000	839380000	80516000	33148000	47368000	145230000	80426000	64803000	530870000	235640000	295220000	1107400000	675460000	431980000	27355	5213	25904	171300;171301;171302;171303;171304;171305;171306;171307	231741;231742;231743;231744;231745;231746;231747;231748;231749	231742			9	
KGEGLPNFDNNNIK	2	Unmodified	1558.774	0.77396981	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	5.81		6	6					4	1	3	5	6	3	43.184	40.043	2;3	2.0998E-21	34943	160511_QHF_FH_JSI11i_3	175.21	147.89			0.91558	0.99756	21.914	16	1	Median	1.3666	1.1019	6.5001	3	0	Median	0.8214	1.0001	7.3389	5	0	Median	1.0378	0.99501	8.1475	5	1	Median	0.54829	0.56164	11.168	3	0	Plateau	2530000000	1375600000	1154400000	293710000	124560000	169150000	489040000	268870000	220180000	1121800000	580490000	541300000	625430000	401650000	223790000	27356	5251	25905	171308;171309;171310;171311;171312;171313;171314;171315;171316;171317;171318;171319;171320;171321;171322;171323;171324	231750;231751;231752;231753;231754;231755;231756;231757;231758;231759;231760;231761;231762;231763;231764;231765;231766;231767;231768;231769;231770;231771;231772;231773;231774;231775	231752			26	
KGEIFELK	2	Unmodified	962.54368	0.54368251	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	4	3	2	36.637	35.825	2;3	0.0018173	30082	160511_QHF_FH_JSI12i_3	59.35	36.278			1.0139	1.0107	32.835	13	1	Median	1.185	1.2417	30.884	4	1	Linear	0.78936	0.93311	3.6827	4	0	Median	1.0781	1.013	8.3592	3	0	Median	0.61833	0.62099	10.721	2	0	Median	4741600000	2332800000	2408800000	322340000	128250000	194090000	607460000	332810000	274650000	1606600000	658500000	948090000	2205200000	1213300000	991980000	27357	2046;2296	25906	171325;171326;171327;171328;171329;171330;171331;171332;171333;171334;171335;171336;171337	231776;231777;231778;231779;231780;231781;231782;231783;231784;231785;231786;231787;231788;231789;231790;231791;231792;231793;231794;231795;231796	231794			21	
KGEITGEVHMPSGK	2	Unmodified	1468.7344	0.73441319	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	2	3	2	25.427	24.969	3;4	0.0024944	20465	160511_QHF_FH_JSI12i_3	48.423	36.63			0.78829	0.94244	46.221	8	1	Median	1.4094	1.2229	NaN	1	0	Median	0.78829	0.94244	0.31331	2	0	Median	1.4095	1.2726	71.136	3	1	Median	0.62872	0.64543	5.8149	2	0	Median	920810000	517990000	402810000	56473000	25195000	31279000	112310000	58060000	54253000	288670000	133280000	155390000	463350000	301460000	161890000	27358	512	25907	171338;171339;171340;171341;171342;171343;171344;171345	231797;231798;231799;231800;231801;231802;231803;231804	231802			7	
KGEITGEVHMPSGK	2	Oxidation (M)	1484.7293	0.72932781	512	O75369	FLNB	Filamin-B	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		24.894	24.894	3	0.028786	21220	160511_QHF_FH_JSI11i_3	34.498	14.402			1.0778	1.0144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0778	1.0144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59376000	28594000	30782000	0	0	0	0	0	0	59376000	28594000	30782000	0	0	0	27359	512	25907	171346	231805	231805			1	
KGEITGEVR	1	Unmodified	987.53491	0.53490874	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.3		6	7					4		4	5	4	4	9.8689	7.3887	2;3	3.2626E-05	6568	160511_QHF_FH_JSI10i_2	78.098	42.803			0.89754	0.99425	30.969	17	1	Median	1.5246	1.2984	22.813	4	1	Median	0.76253	0.89692	14.394	5	0	Median	1.1288	1.0839	10.459	4	0	Median	0.55489	0.53026	17.732	4	0	Linear	7637600000	4297500000	3340100000	659200000	286970000	372230000	1376100000	761660000	614480000	3154800000	1452200000	1702600000	2447400000	1796700000	650740000	27360	1192	25908	171347;171348;171349;171350;171351;171352;171353;171354;171355;171356;171357;171358;171359;171360;171361;171362;171363	231806;231807;231808;231809;231810;231811;231812;231813;231814;231815;231816;231817;231818;231819;231820;231821;231822;231823;231824;231825;231826;231827;231828;231829;231830	231826			25	
KGELTQEEK	2	Unmodified	1060.5401	0.5400537	3402	Q8IV38	ANKMY2	Ankyrin repeat and MYND domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.7511	5.7989	2	5.1881E-05	3552	160511_QHF_FH_JSI11i_3	98.04	25.397			0.72453	0.70865	70.529	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2247	1.1669	NaN	1	0	Median	0.42863	0.43037	NaN	1	0	Median	161830000	107820000	54019000	0	0	0	0	0	0	83176000	53635000	29541000	78659000	54182000	24477000	27361	3402	25909	171364;171365	231831;231832;231833;231834	231832			4	
KGENSVSVDGK	2	Unmodified	1118.5568	0.5567664	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	7.5983	7.598	2;3	0.00034518	5009	160511_QHF_FH_JSI12i_3	74.611	44.844			0.92549	0.86478	56.416	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0915	1.0269	59.916	3	1	Median	0.6668	0.67627	9.8588	2	1	Median	351030000	174750000	176280000	0	0	0	0	0	0	156390000	65795000	90592000	194640000	108950000	85688000	27362	179	25910	171366;171367;171368;171369;171370	231835;231836;231837;231838;231839;231840;231841	231839			6	
KGEPGPPDADGPLYLPYK	2	Unmodified	1912.9571	0.95707914	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	60.997	60.86	3	3.2549E-07	53980	160511_QHF_FH_JSI11i_3	100.35	90.604			0.78763	0.77285	10.554	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87506	0.83273	NaN	1	0	Median	0.70893	0.71727	NaN	1	0	Median	172750000	99450000	73296000	0	0	0	0	0	0	65026000	36681000	28346000	107720000	62769000	44951000	27363	5213	25911	171371;171372	231842;231843;231844	231842			3	
KGEPVSAEDLGVSGALTVLMK	2	Unmodified	2100.1137	0.11365613	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	1	3	2	4	92.937	92.024	2;3;4	1.6819E-15	80948	160511_QHF_FH_JSI12i_3	133.98	125.38			0.77321	0.89479	62.173	9	2	Median	1.5221	1.3113	NaN	1	0	Median	0.34996	0.89479	92.436	3	1	Plateau	1.1628	1.1141	0.13235	2	0	Median	0.55494	0.57069	20.017	3	1	Median	768730000	452470000	316260000	43346000	16452000	26894000	158160000	118260000	39897000	170630000	64851000	105780000	396590000	252900000	143690000	27364	1004	25912	171373;171374;171375;171376;171377;171378;171379;171380;171381;171382	231845;231846;231847;231848;231849;231850;231851;231852;231853;231854;231855;231856;231857;231858;231859;231860;231861;231862;231863;231864;231865;231866;231867	231862			22	
KGEPVSAEDLGVSGALTVLMK	2	Oxidation (M)	2116.1086	0.10857076	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	81.179	80.953	3	2.0528E-09	70486	160511_QHF_FH_JSI12i_3	100.94	85.177			0.5111	0.5113	15.839	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5111	0.5113	15.839	2	1	Median	116370000	76084000	40290000	0	0	0	0	0	0	0	0	0	116370000	76084000	40290000	27365	1004	25912	171383;171384	231868;231869	231868		585	2	
KGEQGGPPPK	2	Unmodified	993.52434	0.52434406	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		4.5631	4.5631	2;3	0.00017247	2214	160511_QHF_FH_JSI11i_3	82.831	56.228			0.85625	0.81212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85625	0.81212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130950000	73198000	57748000	0	0	0	0	0	0	130950000	73198000	57748000	0	0	0	27366	5320	25913	171385;171386	231870;231871	231870			2	
KGEQMNSAVLPEMENQVAVSSLSAVIK	2	Unmodified	2858.4518	0.45177932	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	96.627	96.548	3;4	3.6457E-14	85977	160511_QHF_FH_JSI11i_3	89.055	86.365			0.91382	0.86193	23.048	7	0	Median	1.3496	1.1747	NaN	1	0	Median	0.70194	0.85946	NaN	1	0	Median	1.0544	0.87386	7.1047	3	0	Plateau	0.62106	0.63377	14.412	2	0	Median	341650000	191770000	149880000	24374000	10265000	14109000	31788000	17108000	14679000	134030000	64229000	69802000	151460000	100160000	51292000	27367	1557	25914	171387;171388;171389;171390;171391;171392;171393	231872;231873;231874;231875;231876;231877;231878;231879;231880;231881;231882;231883;231884;231885	231875			13	
KGEQTSSGTLSAFASYFNSK	2	Unmodified	2109.0015	0.0014631481	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	2	1	1		74.796	73.834	3	1.188E-08	60967	160511_QHF_FH_JSI9i_3	104.35	90.518			0.94645	0.87673	19.575	3	0	Median	1.3427	1.0862	NaN	1	0	Median	0.62948	0.73472	NaN	1	0	Median	0.94645	0.87673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	239280000	113350000	125930000	63975000	31193000	32782000	63023000	37339000	25685000	112280000	44824000	67458000	0	0	0	27368	2137	25915	171394;171395;171396;171397	231886;231887;231888;231889;231890;231891;231892	231891			7	
KGESGQSWPR	1	Unmodified	1130.5469	0.54687041	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							2	4	1		10.766	10.081	2;3	4.2601E-05	7549	160511_QHF_FH_JSI9i_3	69.346	67.418			1.9619	1.5669	45.145	3	0	Plateau	1.9358	1.5489	1.635	2	0	Median	0.6209	0.70882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	571270000	220790000	350480000	420570000	130250000	290320000	150700000	90540000	60162000	0	0	0	0	0	0	27369	2642	25916	171398;171399;171400;171401;171402;171403;171404	231893;231894;231895;231896;231897;231898;231899;231900;231901;231902	231898			10	
KGESQTDIEITR	1	Unmodified	1375.6943	0.69432251	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		19.149	19.149	3	0.00045619	15936	160511_QHF_FH_JSI11i_3	51.726	44.182			0.69085	0.62741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69085	0.62741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51959000	27144000	24814000	0	0	0	0	0	0	51959000	27144000	24814000	0	0	0	27370	1655	25917	171405	231903	231903			1	
KGESQTDIEITREEDFTR	1	Unmodified	2153.0237	0.023655153	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							2	2	3		40.54	39.899	3;4	6.6897E-05	34946	160511_QHF_FH_JSI9i_2	68.567	64.129			1.2366	1.2612	30.167	7	0	Median	1.8057	1.5591	29.992	2	0	Median	0.96895	1.18	35.262	2	0	Median	1.0201	1.0824	29.406	3	0	Median	NaN	NaN	NaN	0	0	Median	882340000	429770000	452570000	259020000	95885000	163140000	327580000	177430000	150150000	295740000	156460000	139290000	0	0	0	27371	1655	25918	171406;171407;171408;171409;171410;171411;171412	231904;231905;231906;231907;231908;231909;231910;231911;231912;231913;231914;231915;231916	231912			13	
KGETQTL	1	Unmodified	775.40758	0.40758296	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	3.82	1	7					1			2	3	3	1	7.8285	6.04	2	0.016589	4997	160511_QHF_FH_JSI9i_2	69.383	43.274			1.0501	1.2628	36.543	5	5	Median	1.7336	1.4619	NaN	1	1	Median	0.9847	1.1969	7.5745	2	2	Median	0.9313	0.93498	61.945	2	2	Median	NaN	NaN	NaN	0	0	Median	502410000	242000000	260410000	93683000	34431000	59253000	316660000	164150000	152510000	92071000	43422000	48648000	0	0	0	27372	494	25919	171413;171414;171415;171416;171417;171418;171419;171420;171421	231917;231918;231919;231920;231921;231922;231923;231924;231925	231921			9	
KGEVIHR	1	Unmodified	837.48209	0.48208531	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				4.7684	4.269	3	0.04225	2262	160511_QHF_FH_JSI9i_3	29.149	7.018			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126230000	0	126230000	126230000	0	126230000	0	0	0	0	0	0	0	0	0	27373	3736	25920	171422	231926	231926			1	
KGEYVFPAK	2	Unmodified	1037.5546	0.55458155	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	24.64	24.207	2;3	0.004466	20424	160511_QHF_FH_JSI11i_3	56.916	43.538			0.55003	0.56748	28.185	3	1	Median	NaN	NaN	NaN	0	0	Median	0.66862	0.76041	NaN	1	1	Median	0.46643	0.43281	NaN	1	0	Median	0.55003	0.56748	NaN	1	0	Median	280400000	206180000	74224000	0	0	0	34218000	19725000	14493000	99886000	69305000	30581000	146300000	117150000	29150000	27374	4856	25921	171423;171424;171425	231927;231928;231929	231927			3	
KGFIGPGIDVPAPDMSTGER	1	Unmodified	2043.0095	0.0095254139	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		70.528	69.546	3	3.1493E-05	58289	160511_QHF_FH_JSI10i_3	48.616	35.902			0.98275	1.0648	16.641	3	2	Plateau	1.7159	1.4114	NaN	1	1	Median	0.94157	1.0648	NaN	1	0	Median	1.0957	1.0517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105910000	52936000	52978000	19837000	9370200	10466000	31588000	15860000	15727000	54490000	27706000	26785000	0	0	0	27375	762	25922	171426;171427;171428	231930;231931;231932	231931			3	
KGFPVLSK	2	Unmodified	874.52764	0.52763852	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			31.952	30.555	3	0.013112	25486	160511_QHF_FH_JSI10i_3	36.381	20.237			0.61085	0.7186	74.89	3	0	Median	1.12	0.94725	103.48	2	0	Median	0.61085	0.7186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42872000	21838000	21034000	25348000	11130000	14218000	17524000	10708000	6815900	0	0	0	0	0	0	27376	197	25923	171429;171430;171431	231933;231934	231933			2	
KGGPSPGDVEAIK	2	Unmodified	1253.6616	0.66156582	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	24.896	24.567	2;3	2.9723E-05	20852	160511_QHF_FH_JSI11i_3	70.889	48.414			0.74613	0.80275	33.873	6	0	Median	1.4451	1.2198	NaN	1	0	Median	0.70176	0.85882	NaN	1	0	Median	0.86307	0.81877	12.342	2	0	Median	0.50359	0.5168	10.616	2	0	Median	624890000	394560000	230330000	39799000	18123000	21675000	44427000	23751000	20676000	255730000	152850000	102880000	284930000	199830000	85100000	27377	937	25924	171432;171433;171434;171435;171436;171437	231935;231936;231937;231938;231939;231940;231941;231942;231943	231938			9	
KGGSWIQEINVAEK	2	Unmodified	1557.8151	0.81510635	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	6.9	5.96			7						3	3	4	2	1	58.619	55.434	2;3	1.213E-09	48730	160511_QHF_FH_JSI11i_3	147.26	121.32			1.0004	0.96135	30.199	10	3	Median	1.2113	0.95148	28.533	3	1	Plateau	0.81906	0.95478	37.177	4	2	Median	0.97835	0.92001	7.6757	2	0	Median	0.68507	0.66649	NaN	1	0	Median	2273100000	1067600000	1205400000	620980000	223090000	397890000	646740000	337500000	309230000	960250000	480810000	479440000	45102000	26219000	18883000	27378	2094	25925	171438;171439;171440;171441;171442;171443;171444;171445;171446;171447	231944;231945;231946;231947;231948;231949;231950;231951;231952;231953;231954;231955;231956;231957;231958;231959;231960;231961;231962;231963;231964;231965;231966	231948			23	
KGGSYSQAASSDSAQGSDMSLTACKV	2	Unmodified	2592.1432	0.14319472	1352	P30453;P30457;P30459;P16190;P10314;P18462	HLA-A	HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain	no	no	0	0	0	2	By MS/MS				3	0			1							1				44.612	43.012	3	0.055182	35140	160511_QHF_FH_JSI9i_3	29.198	22.741			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4887000	0	4887000	4887000	0	4887000	0	0	0	0	0	0	0	0	0	27379	1352	25926	171448	231967	231967			1	
KGGSYSQAASSDSAQGSDVSLTACKV	2	Unmodified	2560.1711	0.17112403	788;967	P10316;P01892;P01891	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain	no	no	0	0	0	2		By MS/MS			3	0			2								2			40.582	39.076	3	2.7341E-20	32625	160511_QHF_FH_JSI10i_3	121.62	118.66			0.48681	0.57061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48681	0.57061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25630000	15226000	10404000	0	0	0	25630000	15226000	10404000	0	0	0	0	0	0	27380	967;788	25927	171449;171450	231968;231969;231970	231969			3	
KGHAVGDIPGVR	1	Unmodified	1204.6677	0.66765425	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			4							3	1			22.131	20.877	3	0.00030986	16542	160511_QHF_FH_JSI9i_3	63.966	54.644			5.8388	4.2783	104.7	4	1	Linear	3.8356	3.0704	44.951	3	1	Plateau	0.24476	0.27411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	313700000	93469000	220230000	291830000	75454000	216370000	21868000	18015000	3853000	0	0	0	0	0	0	27381	1992	25928	171451;171452;171453;171454	231971;231972;231973	231971			3	
KGHEENGDVVTEPQVAEK	2	Unmodified	1964.9439	0.94394827	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.71	20.71	3	0.00069266	17296	160511_QHF_FH_JSI11i_3	51.487	41.907			0.78641	0.72786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78641	0.72786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72629000	43722000	28907000	0	0	0	0	0	0	72629000	43722000	28907000	0	0	0	27382	5279	25929	171455	231974	231974			1	
KGIDYDFPSLILQK	2	Unmodified	1635.8872	0.88720866	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	86.372	85.531	3	0.00082716	74075	160511_QHF_FH_JSI12i_3	55.841	51.739			0.52918	0.53035	45.847	3	1	Plateau	1.4605	1.2861	NaN	1	0	Median	0.5531	0.67274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52918	0.53035	NaN	1	0	Median	63688000	37956000	25732000	3776900	1195900	2581000	7012300	5456400	1555900	0	0	0	52899000	31304000	21595000	27383	4547	25930	171456;171457;171458	231975;231976;231977	231976			3	
KGIEALK	2	Unmodified	757.46979	0.46978929	4691	Q9H3H1	TRIT1	tRNA dimethylallyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	7.3753	7.1478	2	0.050186	4581	160511_QHF_FH_JSI12i_3	43	7.8947			1.0619	0.95898	4.3697	2	0	Median	1.2361	0.98908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91225	0.9298	NaN	1	0	Median	1443800000	579160000	864650000	200500000	69798000	130700000	0	0	0	0	0	0	1243300000	509360000	733950000	27384	4691	25931	171459;171460	231978	231978			1	
KGIEKNLGIGK	3	Acetyl (K)	1197.7081	0.70812208	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	44.776	35.499	3	0.00322	18581	160513_QHF_FH_JSI12Kac_6	68.536	34.66			0.68576	0.74818	28.428	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8862	1.0505	NaN	1	0	Median	0.6187	0.59719	NaN	1	0	Median	0.68576	0.74818	NaN	1	0	Median	51686000	31064000	20623000	0	0	0	18221000	10764000	7456300	22422000	14121000	8300600	11044000	6178100	4865700	27385	1504	25932	171461;171462;171463	231979;231980;231981	231980	1526;1527		3	
KGIGPVYSSK	2	Unmodified	1034.576	0.57604528	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		17.018	16.168	2;3	0.0062231	13119	160511_QHF_FH_JSI10i_3	33.057	28.592			0.80891	1.2152	19.681	5	0	Linear	1.4134	1.1452	4.0178	2	0	Median	0.77738	0.90797	7.948	2	0	Median	0.79004	0.72492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	315860000	137780000	178080000	162900000	56620000	106280000	105860000	57444000	48420000	47098000	23719000	23378000	0	0	0	27386	1356	25933	171464;171465;171466;171467;171468	231982;231983;231984;231985;231986;231987	231985			6	
KGISLNPEQWSQLK	2	Unmodified	1626.873	0.87295558	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				69.609	68.121	3	4.324E-05	55850	160511_QHF_FH_JSI9i_3	87.083	76.028			1.158	0.93842	NaN	1	0	Median	1.158	0.93842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25772000	11729000	14043000	25772000	11729000	14043000	0	0	0	0	0	0	0	0	0	27387	1815	25934	171469	231988;231989	231988			2	
KGIVDQSQQAYQEAFEISK	2	Unmodified	2168.075	0.074962442	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3	3	6	8					1		4	5	5	4	65.413	64.084	2;3	7.6099E-33	56242	160511_QHF_FH_JSI9i_2	185.55	170.39			0.77212	0.88742	16.866	16	0	Median	1.3482	1.1351	8.9652	2	0	Median	0.74868	0.89116	4.5296	5	0	Median	0.94465	0.88531	12.205	5	0	Median	0.67372	0.68778	5.8459	4	0	Median	3664900000	2105800000	1559100000	376490000	171070000	205420000	980550000	589820000	390730000	1215800000	638750000	577040000	1092100000	706180000	385900000	27388	2051	25935	171470;171471;171472;171473;171474;171475;171476;171477;171478;171479;171480;171481;171482;171483;171484;171485;171486;171487	231990;231991;231992;231993;231994;231995;231996;231997;231998;231999;232000;232001;232002;232003;232004;232005;232006;232007;232008;232009;232010;232011;232012;232013;232014;232015;232016;232017;232018;232019;232020;232021;232022;232023;232024;232025;232026;232027;232028;232029;232030	232014			41	
KGIVDQSQQAYQEAFEISKK	3	Unmodified	2296.1699	0.16992546	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	4	2	2	61.325	60.36	3;4	7.2281E-19	49665	160511_QHF_FH_JSI9i_3	160.13	151.53			1.2381	0.99428	54.374	9	3	Median	1.2698	1.0292	4.8773	2	0	Median	1.147	1.3134	84.897	4	1	Median	1.1625	1.1224	17.552	2	1	Median	0.87851	0.87347	NaN	1	1	Median	1919100000	848300000	1070800000	324840000	107930000	216900000	819200000	411740000	407460000	675310000	266310000	409000000	99743000	62313000	37430000	27389	2051	25936	171488;171489;171490;171491;171492;171493;171494;171495;171496;171497;171498	232031;232032;232033;232034;232035;232036;232037;232038;232039;232040;232041;232042;232043;232044;232045;232046;232047;232048;232049;232050;232051	232047			21	
KGLDPYNVLAPK	2	Acetyl (K)	1355.7449	0.74490152	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.9	0.737						3	4	2			4	4	1	77.151	67.468	2	0.0014853	35428	160513_QHF_FH_JSI11Kac_5	84.17	48.946			1.3894	1.3891	120.21	7	4	Median	NaN	NaN	NaN	0	0	Median	1.4238	1.6615	111.82	3	2	Median	13.241	12.778	153.58	3	2	Plateau	0.6404	0.67559	NaN	1	0	Median	109710000	26637000	83069000	0	0	0	54471000	14392000	40078000	45094000	6614500	38480000	10141000	5630800	4510500	27390	974	25937	171499;171500;171501;171502;171503;171504;171505;171506;171507	232052;232053;232054;232055;232056;232057;232058;232059	232058	746		8	
KGLTPSQIGVILR	1	Acetyl (K)	1422.8558	0.85584895	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.19	71.877	2	0.0019556	39503	160513_QHF_FH_JSI11Kac_6	82.171	45.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13634000	13634000	0	0	0	0	0	0	0	13634000	13634000	0	0	0	0	27391	1995	25938	171508	232060	232060	2023		1	
KGNFILSAGVDK	2	Unmodified	1247.6874	0.68738664	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	42.516	40.969	2;3	0.0066855	34721	160511_QHF_FH_JSI12i_3	57.164	39.778			1.977	1.9191	56.931	2	1	Median	3.531	2.8703	NaN	1	1	Median	1.1069	1.2831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72255000	30471000	41784000	26820000	7696300	19124000	45435000	22775000	22660000	0	0	0	0	0	0	27392	4568	25939	171509;171510;171511	232061;232062;232063;232064	232064			4	
KGNFNYIEFTR	1	Unmodified	1387.6884	0.68844927	223;1151	O14950;P19105	MYL12B;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light chain 12A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	3	2	4	1	51.894	49.076	2;3	4.6405E-06	41195	160511_QHF_FH_JSI10i_3	87.184	79.819			1.0388	0.96412	15.062	9	2	Median	1.1939	0.96412	13.628	3	0	Median	0.79115	0.90913	0.99467	2	0	Median	1.0613	0.99037	11.733	3	2	Median	0.64789	0.7196	NaN	1	0	Median	604600000	288840000	315760000	145680000	56955000	88728000	185250000	95010000	90244000	263570000	131480000	132090000	10090000	5390000	4700200	27393	223;1151	25940	171512;171513;171514;171515;171516;171517;171518;171519;171520;171521	232065;232066;232067;232068;232069;232070;232071;232072	232068			8	
KGNLVYIIDFGLAK	2	Unmodified	1549.8868	0.88681473	1634	P48730	CSNK1D	Casein kinase I isoform delta	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	90.002	90.002	3	0.00063609	80319	160511_QHF_FH_JSI11i_3	67.275	54.354			0.34947	0.33478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34947	0.33478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7275900	5488800	1787100	0	0	0	0	0	0	7275900	5488800	1787100	0	0	0	27394	1634	25941	171522;171523;171524	232073;232074;232075	232073			3	
KGPAAIQK	2	Unmodified	811.49159	0.49158736	62	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			6.293	5.7833	2	0.018673	3760	160511_QHF_FH_JSI10i_3	47.743	25.121		+	0.6567	0.63441	70.378	2	0	Median	0.4743	0.3857	NaN	1	0	Median	0.90923	1.0435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186580000	116880000	69704000	111860000	77977000	33880000	74728000	38904000	35824000	0	0	0	0	0	0	27395	62	25942	171525;171526	232076;232077	232076			2	
KGPAEKGK	3	Acetyl (K)	855.48142	0.48141661	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	5.1392	-4.3102	3	0.02183	1523	160513_QHF_FH_JSI12Kac_5	57.859	34.787			1.1953	1.1457	20.519	4	0	Median	1.2498	1.06	NaN	1	0	Median	0.69902	0.83645	NaN	1	0	Median	1.3334	1.3293	NaN	1	0	Median	1.1432	1.2385	NaN	1	0	Median	89783000	40320000	49463000	17595000	5799000	11796000	26183000	13074000	13110000	23245000	9546700	13699000	22759000	11901000	10858000	27396	3521	25943	171527;171528;171529;171530	232078;232079;232080;232081;232082	232080	2879		5	
KGPAPELQGVEVALAPEELELDPMAMTQK	2	Unmodified	3090.5617	0.5617237	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.21	101.22	3	1.7661E-33	87854	160511_QHF_FH_JSI12i_3	149.66	147.19			0.79291	0.81053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79291	0.81053	NaN	1	0	Median	294850000	167000000	127850000	0	0	0	0	0	0	0	0	0	294850000	167000000	127850000	27397	2412	25944	171531	232083	232083			1	
KGPDGYDPQFITK	2	Unmodified	1464.7249	0.72489436	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	40.819	40.713	2;3	0.00042633	34779	160511_QHF_FH_JSI12i_3	52.891	46.616			0.74784	0.77549	5.2565	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93003	0.86994	4.083	2	1	Median	0.79507	0.80585	2.7688	2	0	Median	407390000	225350000	182040000	0	0	0	0	0	0	147210000	76875000	70333000	260180000	148480000	111710000	27398	4856	25945	171532;171533;171534;171535	232084;232085;232086;232087;232088	232088			5	
KGPEADSEWR	1	Unmodified	1173.5415	0.54145068	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	13.72	13.6	2;3	0.0003434	10709	160511_QHF_FH_JSI11i_3	77.662	45.308			0.86025	0.90778	17.473	4	0	Median	NaN	NaN	NaN	0	0	Median	0.96725	1.1971	NaN	1	0	Median	0.99921	0.96458	NaN	1	0	Median	0.76091	0.83009	4.0683	2	0	Median	349370000	190520000	158850000	0	0	0	30798000	15045000	15753000	172460000	93673000	78783000	146120000	81804000	64313000	27399	2502	25946	171536;171537;171538;171539	232089;232090;232091;232092;232093;232094	232089			6	
KGPEFQEFLLTK	2	Unmodified	1435.7711	0.77111627	1605	P47736	RAP1GAP	Rap1 GTPase-activating protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	67.136	66.84	3	7.4325E-05	57785	160511_QHF_FH_JSI12i_3	62.042	56.963			0.71683	0.74016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71683	0.74016	NaN	1	0	Median	37258000	23487000	13771000	0	0	0	0	0	0	0	0	0	37258000	23487000	13771000	27400	1605	25947	171540	232095	232095			1	
KGPGEVAGTVTGQK	2	Unmodified	1327.7096	0.70957864	3316	Q86U44	METTL3	N6-adenosine-methyltransferase 70 kDa subunit	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	16.371	16.051	3	9.2718E-05	12769	160511_QHF_FH_JSI12i_3	63.754	60.887			0.85438	0.75287	29.935	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0882	1.276	NaN	1	0	Median	1.0371	0.99558	NaN	1	0	Median	0.70386	0.70311	NaN	1	0	Median	158200000	96019000	62184000	0	0	0	25662000	13488000	12173000	54632000	29387000	25245000	77909000	53144000	24766000	27401	3316	25948	171541;171542;171543	232096;232097;232098;232099;232100	232100			5	
KGPGLAVQSGDK	2	Unmodified	1155.6248	0.62478638	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	2	2	4	3	13.672	12.303	2;3	1.5611E-05	9847	160511_QHF_FH_JSI11i_3	82.362	72.675			0.99933	0.97453	54.737	9	2	Median	1.2199	0.9836	5.716	2	0	Median	0.87724	1.0093	7.1603	2	0	Median	0.99933	0.97453	11.846	3	1	Median	0.77677	0.78524	151.13	2	1	Median	2872100000	1465600000	1406500000	809250000	359230000	450020000	987360000	502710000	484650000	870540000	460960000	409580000	204980000	142720000	62262000	27402	4197	25949	171544;171545;171546;171547;171548;171549;171550;171551;171552;171553;171554	232101;232102;232103;232104;232105;232106;232107;232108;232109;232110;232111;232112;232113;232114;232115;232116;232117;232118;232119;232120;232121;232122	232104			21	
KGPGPGGGVSGGK	2	Unmodified	1053.5567	0.55670682	642	O95081	AGFG2	Arf-GAP domain and FG repeat-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			5.87	5.356	2;3	7.8927E-05	3396	160511_QHF_FH_JSI9i_3	57.434	48.853			1.154	0.93911	10.455	3	0	Median	1.255	1.0148	13.364	2	0	Median	0.78147	0.93911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	398280000	177130000	221150000	319810000	132340000	187460000	78476000	44789000	33687000	0	0	0	0	0	0	27403	642	25950	171555;171556;171557	232123;232124;232125;232126	232126			4	
KGPLENPK	2	Unmodified	881.49707	0.49706667	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	7.4751	7.5728	2	0.01186	5055	160511_QHF_FH_JSI12i_3	53.968	34.608			1.2983	1.3061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2983	1.3061	NaN	1	0	Median	36027000	16455000	19573000	0	0	0	0	0	0	0	0	0	36027000	16455000	19573000	27404	4736	25951	171558	232127	232127			1	
KGPLEWQDYIYK	2	Unmodified	1538.7769	0.77692993	3807	Q8WXD5	GEMIN6	Gem-associated protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	69.363	68.772	2;3	0.0014016	59509	160511_QHF_FH_JSI12i_3	68.355	44.369			0.85475	0.85653	25.394	6	0	Median	0.64213	0.52076	NaN	1	0	Median	0.72159	0.80805	NaN	1	0	Median	0.98195	0.91749	24.836	2	0	Median	0.90118	0.92405	2.4893	2	0	Median	221120000	120880000	100240000	38587000	24710000	13878000	21769000	14391000	7377800	75267000	32146000	43120000	85497000	49636000	35861000	27405	3807	25952	171559;171560;171561;171562;171563;171564	232128;232129;232130;232131;232132	232132			5	
KGPLTVAQK	2	Unmodified	940.57057	0.57056597	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		12.045	11.549	2	0.026539	8954	160511_QHF_FH_JSI9i_3	41.029	15.292			0.78688	0.92142	37.264	3	0	Median	1.6754	1.3682	NaN	1	0	Median	0.78688	0.92142	NaN	1	0	Median	0.67967	0.64968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	293540000	140730000	152800000	134220000	52793000	81423000	76548000	43704000	32844000	82772000	44234000	38538000	0	0	0	27406	2175	25953	171565;171566;171567	232133	232133			1	
KGPNVVGPYGLLQPFADAMK	2	Unmodified	2101.103	0.10303187	795	P03886	MT-ND1	NADH-ubiquinone oxidoreductase chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	99.823	99.733	3	2.551E-09	88560	160511_QHF_FH_JSI11i_3	111.66	107.47			0.79571	0.82713	33.799	4	0	Median	1.3251	1.0711	NaN	1	0	Median	0.69097	0.79149	NaN	1	0	Median	0.91634	0.86439	NaN	1	0	Median	0.47048	0.4819	NaN	1	0	Median	499420000	270140000	229280000	83041000	35802000	47239000	73665000	40823000	32842000	276140000	145330000	130810000	66573000	48187000	18386000	27407	795	25954	171568;171569;171570;171571	232134;232135;232136;232137;232138;232139;232140;232141;232142;232143;232144;232145;232146	232137			13	
KGPNVVGPYGLLQPFADAMK	2	Oxidation (M)	2117.0979	0.097946491	795	P03886	MT-ND1	NADH-ubiquinone oxidoreductase chain 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			85.926	84.728	3	1.7373E-05	70812	160511_QHF_FH_JSI10i_3	69.148	66.18			0.76854	0.75523	7.5281	2	0	Median	0.86524	0.71608	NaN	1	0	Median	0.68264	0.79652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41335000	23798000	17537000	23213000	12131000	11081000	18122000	11667000	6455300	0	0	0	0	0	0	27408	795	25954	171572;171573	232147;232148;232149;232150	232148		311	4	
KGPQEVGPQGPAVPSGGGR	1	Unmodified	1773.9122	0.91219463	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			25.841	24.502	3	0.0049123	19818	160511_QHF_FH_JSI9i_3	44.238	39.028			2.0675	1.6791	NaN	1	1	Median	2.0675	1.6791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17925000	6437300	11488000	17925000	6437300	11488000	0	0	0	0	0	0	0	0	0	27409	3777	25955	171574;171575	232151;232152	232152			2	
KGPSGYGFNLHSDK	2	Unmodified	1505.7263	0.72629134	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		28.347	27.377	3;4	4.5509E-07	22425	160511_QHF_FH_JSI9i_3	118.2	107.56			0.80058	0.77031	14.276	7	1	Median	0.95756	0.77415	16.976	3	0	Plateau	0.67005	0.76694	7.8758	2	0	Median	0.75852	0.71173	4.2235	2	1	Median	NaN	NaN	NaN	0	0	Median	952590000	509190000	443400000	352020000	172200000	179820000	272050000	174290000	97759000	328530000	162710000	165820000	0	0	0	27410	198	25956	171576;171577;171578;171579;171580;171581;171582	232153;232154;232155;232156;232157;232158;232159;232160;232161;232162;232163	232163			11	
KGPSSTGASGQAK	2	Unmodified	1174.5942	0.59421454	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.01			6					3	1	2	2	4	2	4.5423	1.2344	2;3	1.5298E-05	2140	160511_QHF_FH_JSI11i_3	106.11	97.154			0.94963	0.85282	27.145	9	1	Median	1.0633	0.84399	15.752	2	0	Median	0.70585	0.82681	42.204	2	0	Median	0.98135	0.90989	21.613	3	0	Plateau	0.63664	0.67337	23.393	2	1	Median	1689900000	1006500000	683390000	773420000	385940000	387480000	292630000	191020000	101610000	604510000	416820000	187690000	19377000	12764000	6612500	27411	5066	25957	171583;171584;171585;171586;171587;171588;171589;171590;171591;171592	232164;232165;232166;232167;232168;232169;232170;232171;232172;232173;232174	232165			11	
KGPSTIQK	2	Unmodified	857.49707	0.49706667	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	5.432	5.2011	2	0.008838	3063	160511_QHF_FH_JSI9i_3	56.729	3.5629			0.8138	0.78774	22.937	4	0	Median	1.0401	0.83454	NaN	1	0	Median	0.63675	0.74357	NaN	1	0	Median	1.1198	1.0376	NaN	1	0	Median	0.59324	0.59874	NaN	1	0	Median	893990000	507640000	386350000	266980000	136990000	129990000	228910000	158130000	70775000	222190000	117500000	104690000	175920000	95024000	80896000	27412	3212	25958	171593;171594;171595;171596	232175;232176;232177;232178	232178			4	
KGPSTPYTK	2	Unmodified	977.5182	0.51819605	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	8.6818	8.4206	2;3	0.0024435	6091	160511_QHF_FH_JSI11i_3	64.841	34.337			0.91942	0.93108	21.596	8	2	Median	1.3166	1.0496	10.292	2	0	Median	0.73493	0.86127	4.3747	2	0	Median	1.1728	1.1261	7.568	2	1	Median	0.66465	0.68345	8.2955	2	1	Median	2136300000	1166700000	969560000	433870000	185400000	248470000	487580000	281570000	206010000	549110000	286280000	262820000	665730000	413470000	252260000	27413	3685	25959	171597;171598;171599;171600;171601;171602;171603;171604;171605	232179;232180;232181;232182;232183;232184;232185	232179			7	
KGPTAAQAK	2	Unmodified	870.49232	0.49231565	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.39	3.13	2	2	13						1	5	6	4	3	3.6523	2.8509	2;3	0.00010649	1934	160511_QHF_FH_JSI9i_3	67.414	43.259			0.90111	0.8787	110.04	17	4	Median	1.3065	1.1207	129.66	5	1	Median	0.90111	1.0705	91.12	5	1	Median	0.90161	0.85608	85.407	4	1	Median	0.61123	0.60691	100.2	3	1	Median	4938600000	2890900000	2047800000	1473800000	965030000	508790000	1540900000	827130000	713730000	839950000	401830000	438120000	1084000000	696880000	387130000	27414	455	25960	171606;171607;171608;171609;171610;171611;171612;171613;171614;171615;171616;171617;171618;171619;171620;171621;171622;171623	232186;232187;232188;232189;232190;232191;232192;232193;232194;232195;232196;232197;232198;232199;232200;232201;232202;232203;232204;232205;232206;232207;232208;232209;232210;232211;232212	232202			26	
KGQAVDYEGSR	1	Unmodified	1208.5786	0.57856447	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.26		6	7					2		4	4	4	3	8.6549	7.0768	2;3	8.1956E-08	5661	160511_QHF_FH_JSI10i_3	119.27	119.27			0.96876	1.0116	38.064	15	2	Median	1.6903	1.1585	23.195	4	1	Linear	0.70569	0.85162	12.083	4	0	Median	1.0683	1.0284	13.008	4	0	Median	0.59764	0.59394	47.779	3	1	Median	2441500000	1358300000	1083200000	376130000	166020000	210110000	951870000	548530000	403330000	1015100000	584280000	430850000	98339000	59457000	38882000	27415	1034	25961	171624;171625;171626;171627;171628;171629;171630;171631;171632;171633;171634;171635;171636;171637;171638	232213;232214;232215;232216;232217;232218;232219;232220;232221;232222;232223;232224;232225;232226;232227;232228;232229;232230;232231;232232;232233	232220			21	
KGQAVDYEGSRTQEEIVAK	2	Unmodified	2107.0546	0.054561351	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			28.73	27.405	3	0.00295	22649	160511_QHF_FH_JSI10i_3	50.787	36.772			1.15	1.3431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.15	1.3431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27603000	11911000	15692000	0	0	0	27603000	11911000	15692000	0	0	0	0	0	0	27416	1034	25962	171639	232234;232235;232236	232235			3	
KGQEVCVK	2	Unmodified	946.4906	0.49060109	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.7998	5.8476	2	0.0015035	3603	160511_QHF_FH_JSI11i_3	88.948	61.423			0.72113	0.6919	13.658	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81464	0.76206	NaN	1	0	Median	0.63836	0.62821	NaN	1	0	Median	364970000	201170000	163800000	0	0	0	0	0	0	146800000	67579000	79223000	218170000	133590000	84580000	27417	454	25963	171640;171641	232237;232238;232239	232238			3	
KGQGGAGAGDDEEED	1	Unmodified	1433.5543	0.55425979	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.62	4	1			3	4				2	4	3	3	6.392	1.1496	2	1.0146E-42	5135	160513_QHF_FH_JSI9Kac_3	183.33	182.22			1.0073	1.116	25.093	12	0	Median	1.7457	1.4081	25.265	2	0	Median	0.91365	1.0905	13.77	4	0	Median	1.2242	1.202	11.529	3	0	Median	0.70944	0.74129	7.7466	3	0	Median	9278100000	4653100000	4625000000	1090600000	458290000	632350000	2845700000	1401800000	1443800000	2755700000	1318000000	1437700000	2586100000	1475000000	1111100000	27418	1593	25964	171642;171643;171644;171645;171646;171647;171648;171649;171650;171651;171652;171653	232240;232241;232242;232243;232244;232245;232246;232247;232248;232249;232250;232251;232252;232253;232254;232255;232256;232257;232258;232259;232260	232250			21	
KGQGTAATGNQATPK	2	Unmodified	1428.7321	0.732105	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		5.371	5.002	2;3	4.9827E-07	2961	160511_QHF_FH_JSI11i_3	129.38	117.21			1.2151	1.0617	66.392	4	0	Median	2.0314	1.6572	40.719	2	0	Median	0.3861	0.44933	NaN	1	0	Median	0.97546	0.90721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288670000	124020000	164650000	161110000	54292000	106820000	24682000	17175000	7506400	102880000	52557000	50325000	0	0	0	27419	2938	25965	171654;171655;171656;171657	232261;232262;232263;232264	232261			4	
KGQSEEIQK	2	Unmodified	1045.5404	0.54038805	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	6.89	5.74		1	5					3			2	4	3	5.183	3.7527	2;3	9.6296E-07	2758	160511_QHF_FH_JSI11i_3	120.99	92.262			0.89957	0.93516	15.325	7	0	Median	NaN	NaN	NaN	0	0	Median	0.81909	0.99238	NaN	1	0	Median	1.0119	0.98355	9.26	4	0	Median	0.76135	0.77914	20.375	2	0	Median	7011900000	3635600000	3376300000	0	0	0	85746000	48291000	37455000	2895900000	1400600000	1495300000	4030300000	2186700000	1843600000	27420	2120	25966	171658;171659;171660;171661;171662;171663;171664;171665;171666	232265;232266;232267;232268;232269;232270;232271;232272;232273;232274;232275;232276;232277;232278;232279	232267			15	
KGQSEEIQKK	3	Unmodified	1173.6354	0.63535107	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	4.6019	4.381	3	3.4491E-05	2205	160511_QHF_FH_JSI11i_3	97.163	70.376			0.75107	0.77432	45.48	4	0	Median	1.8133	1.4539	NaN	1	0	Median	0.82707	0.93972	NaN	1	0	Median	0.68205	0.63803	NaN	1	0	Median	0.50952	0.51796	NaN	1	0	Median	2040800000	1174700000	866120000	217800000	85766000	132030000	793220000	430150000	363070000	841110000	519250000	321860000	188710000	139550000	49165000	27421	2120	25967	171667;171668;171669;171670	232280;232281;232282;232283;232284;232285	232280			6	
KGQSPLLHSSK	2	Unmodified	1180.6564	0.65642086	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				7.7036	7.1508	3	0.016672	4987	160511_QHF_FH_JSI9i_3	31.881	22.693			1.8896	1.5278	NaN	1	0	Median	1.8896	1.5278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57340000	17946000	39393000	57340000	17946000	39393000	0	0	0	0	0	0	0	0	0	27422	3858	25968	171671	232286	232286			1	
KGQTHTLEDFQR	1	Unmodified	1458.7215	0.72154031	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							3	3			18.691	17.54	2;3	0.00037235	14370	160511_QHF_FH_JSI9i_3	52.463	47.559			0.99163	0.97526	11.423	6	1	Median	1.3008	1.0506	4.2892	3	0	Median	0.74623	0.8767	8.11	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	325730000	161850000	163880000	201900000	94692000	107200000	123840000	67158000	56679000	0	0	0	0	0	0	27423	4304	25969	171672;171673;171674;171675;171676;171677	232287;232288;232289;232290;232291;232292;232293;232294;232295;232296	232296			10	
KGQTPGGAQFVGLELYK	2	Unmodified	1791.9519	0.95193418	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.045	62.542	3	4.5573E-05	52417	160511_QHF_FH_JSI10i_3	72.184	57.929			0.92189	0.89927	7.3692	2	1	Median	1.1525	0.94737	NaN	1	1	Median	0.73739	0.85361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58783000	30032000	28750000	21657000	8915600	12741000	37126000	21117000	16009000	0	0	0	0	0	0	27424	2453	25970	171678;171679	232297;232298;232299	232298			3	
KGQVTGVETDK	2	Unmodified	1160.6037	0.60371659	3621	Q8NCN5	PDPR	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	7.438	7.5357	2	0.061652	4993	160511_QHF_FH_JSI12i_3	46.796	23.368			0.45671	0.46923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45671	0.46923	NaN	1	1	Median	16814000	12147000	4666700	0	0	0	0	0	0	0	0	0	16814000	12147000	4666700	27425	3621	25971	171680	232300	232300			1	
KGSEVESVK	2	Unmodified	961.50803	0.50802529	1215	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	5.8124	5.6253	2	0.0014992	3344	160511_QHF_FH_JSI12i_3	68.893	8.5348			0.78917	0.83862	28.994	4	0	Median	1.238	1.0573	NaN	1	0	Median	0.68209	0.83288	NaN	1	0	Median	0.91305	0.84439	NaN	1	0	Median	0.51467	0.52952	NaN	1	0	Median	573420000	335480000	237940000	59915000	23323000	36592000	85881000	43818000	42063000	149060000	80318000	68740000	278560000	188020000	90542000	27426	1215	25972	171681;171682;171683;171684	232301;232302;232303	232303			3	
KGSISFEDLK	2	Unmodified	1122.5921	0.59208927	2234	Q05823	RNASEL	2-5A-dependent ribonuclease	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.465	22.455	3	0.055299	18422	160511_QHF_FH_JSI12i_3	16.577	7.0894			1.4313	1.4482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4313	1.4482	NaN	1	0	Median	196830000	86961000	109870000	0	0	0	0	0	0	0	0	0	196830000	86961000	109870000	27427	2234	25973	171685	232304	232304			1	
KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR	1	Unmodified	3841.9738	0.97379842	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		99.331	99.171	4	1.7013E-32	81612	160511_QHF_FH_JSI9i_3	110.98	107.61			0.80434	0.92858	25.912	4	0	Median	1.6868	1.3863	NaN	1	0	Median	0.80434	0.92858	2.7269	2	0	Median	0.79407	0.74542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	382780000	198370000	184420000	117930000	47403000	70523000	185320000	107050000	78278000	79534000	43919000	35615000	0	0	0	27428	851	25974	171686;171687;171688;171689	232305;232306;232307;232308;232309	232309			5	
KGSKKAVTK	4	3 Acetyl (K)	1071.6288	0.62880913	1235;1902;2915	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F	no	no	3	0	0	3	By MS/MS			By MS/MS	13	0						2				1			1	19.547	7.1122	2	0.00064954	5355	160513_QHF_FH_JSI9Kac_3	94.465	47.278			0.86776	0.82117	71.861	2	0	Median	1.6715	1.3649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4505	0.49403	NaN	1	0	Median	120140000	55353000	64790000	81797000	30365000	51432000	0	0	0	0	0	0	38346000	24988000	13358000	27429	1235;1902;2915	25975	171690;171691	232310;232311	232310	1114;1117;1118;1119;2713;2714;2715;2716		2	
KGSKKAVTKAQK	5	4 Acetyl (K)	1440.83	0.83002813	1235;1902	Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S	no	no	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12.8	0.687					4	6	2				6	3	3	33.959	25.211	2;3	4.6181E-05	14770	160513_QHF_FH_JSI12Kac_3	81.904	56.576			1.3981	1.485	67.446	12	1	Median	NaN	NaN	NaN	0	0	Median	2.2257	2.6833	16.497	6	1	Median	0.93715	0.94312	6.0919	3	0	Plateau	0.5955	0.62874	5.2865	3	0	Median	337540000	143830000	193710000	0	0	0	167220000	47480000	119740000	89016000	43668000	45348000	81307000	52683000	28624000	27430	1235;1902	25976	171692;171693;171694;171695;171696;171697;171698;171699;171700;171701;171702;171703	232312;232313;232314;232315;232316;232317;232318;232319;232320;232321;232322;232323;232324;232325;232326;232327;232328;232329	232323	1114;1115;1117;1118;1119		17	
KGSKKAVTKVQK	5	4 Acetyl (K)	1468.8613	0.86132826	2915	Q5QNW6	HIST2H2BF	Histone H2B type 2-F	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4					3	1	2	41.521	32.634	2;3	0.00040507	17720	160513_QHF_FH_JSI10Kac_3	68.83	37.304			1.2832	1.371	65.509	6	0	Median	NaN	NaN	NaN	0	0	Median	1.7889	2.1282	10.031	3	0	Plateau	0.92038	0.88318	NaN	1	0	Median	0.6351	0.6906	32.416	2	0	Median	25172000	10978000	14194000	0	0	0	16597000	5602700	10994000	3240500	1820400	1420100	5335200	3555000	1780100	27431	2915	25977	171704;171705;171706;171707;171708;171709	232330;232331;232332;232333;232334	232332	2713;2714;2715;2716		5	
KGSLLIDSSTIDPAVSK	2	Unmodified	1729.9462	0.9461801	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	60.313	59.417	3	0.00016639	49769	160511_QHF_FH_JSI10i_3	58.49	49.074			0.84769	0.91219	13.156	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7284	0.83116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9865	1.0011	NaN	1	1	Median	137290000	76760000	60532000	0	0	0	35599000	19521000	16078000	0	0	0	101690000	57239000	44454000	27432	1380	25978	171710;171711	232335;232336	232335			2	
KGSPVNSLFVAPAVTPVK	2	Unmodified	1810.0353	0.035269879	3827	Q92484	SMPDL3A	Acid sphingomyelinase-like phosphodiesterase 3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			71.281	69.825	3	8.3174E-05	57314	160511_QHF_FH_JSI9i_3	69.979	59.603			0.67441	0.7718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67441	0.7718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14387000	8231600	6154900	0	0	0	14387000	8231600	6154900	0	0	0	0	0	0	27433	3827	25979	171712;171713;171714	232337;232338;232339;232340	232340			4	
KGSQFPDGSDAGLPQFPDPAEPFDASGLQSVPTK	2	Unmodified	3486.6579	0.65794359	5849				yes	yes	0	0	0	1			By matching	By MS/MS	2	0		3										1	2	86.759	85.905	4	0.057742	74252	160511_QHF_FH_JSI12i_2	4.4441	2.4136	+		0.73911	0.76573	8.9976	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73911	0.76573	NaN	1	0	Median	0.80599	0.89487	0	2	0	Median	54189000	28984000	25205000	0	0	0	0	0	0	22825000	12736000	10089000	31363000	16248000	15116000	27434	5849	25980	171715;171716;171717	232341	232341			1	
KGSTAVGVR	1	Unmodified	873.50321	0.50321468	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			5.5459	5.0363	3	0.02485	3071	160511_QHF_FH_JSI9i_3	22.641	15.421			1.0063	0.98369	16.885	2	0	Median	1.3429	1.1084	NaN	1	0	Median	0.75414	0.87298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140040000	73690000	66352000	70715000	31055000	39661000	69326000	42635000	26691000	0	0	0	0	0	0	27435	209	25981	171718;171719	232342;232343	232343			2	
KGTAVFWYNLLR	1	Unmodified	1466.8034	0.80341945	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	81.853	74.138	2;3	4.0393E-05	41384	160513_QHF_FH_JSI10Kac_6	73.848	61.052			0.67797	0.63126	24.105	5	2	Median	0.73834	0.63126	NaN	1	0	Median	0.49357	0.58425	5.89	2	1	Median	1.0293	1.0343	NaN	1	1	Median	0.67797	0.72151	NaN	1	0	Median	584140000	344850000	239290000	99975000	34368000	65606000	402350000	264490000	137860000	35939000	18165000	17774000	45875000	27828000	18048000	27436	294	25982	171720;171721;171722;171723;171724;171725	232344;232345;232346;232347;232348;232349	232348			6	
KGTDIMYTGTLDCWR	1	Unmodified	1815.8284	0.82838993	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	63.136	62.477	2;3	0.00021929	55427	160511_QHF_FH_JSI10i_2	66.387	61.483			0.8977	0.90723	9.8443	4	2	Median	NaN	NaN	NaN	0	0	Median	0.83821	1.0053	10.965	2	0	Median	0.95179	0.88477	NaN	1	1	Median	0.86896	0.87977	NaN	1	1	Median	184990000	91490000	93502000	0	0	0	71277000	27158000	44120000	78659000	41515000	37143000	35056000	22817000	12239000	27437	826	25983	171726;171727;171728;171729	232350;232351;232352;232353;232354	232353			5	
KGTDIMYTGTLDCWRK	2	Unmodified	1943.9234	0.92335294	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		55.925	55.154	3	0.00023424	46532	160511_QHF_FH_JSI10i_3	84.14	77.412			1.042	1.0765	59.492	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4218	1.6395	NaN	1	1	Median	0.76368	0.70685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	140980000	85730000	55249000	0	0	0	52640000	27342000	25298000	88339000	58388000	29951000	0	0	0	27438	826	25984	171730;171731	232355;232356	232356			2	
KGTDVNVFNTILTTR	1	Unmodified	1677.905	0.90498399	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			73.881	72.427	3	0.0003005	59547	160511_QHF_FH_JSI9i_3	62.861	52.664			0.36943	0.35599	41.835	2	0	Median	0.60204	0.47852	NaN	1	0	Median	0.22669	0.26483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75328000	44742000	30586000	50351000	25967000	24384000	24977000	18775000	6202100	0	0	0	0	0	0	27439	805	25985	171732;171733	232357;232358	232358			2	
KGTENGVNGTLTSNVADSPR	1	Unmodified	2015.9872	0.98721007	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		29.636	28.765	3	7.9754E-09	24802	160511_QHF_FH_JSI11i_3	107.41	101.59			0.96343	1.0304	24.369	5	2	Median	1.6721	1.446	15.989	2	2	Median	0.82949	0.98291	6.675	2	0	Median	0.96343	0.90966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	248790000	109900000	138890000	87809000	31626000	56184000	100810000	52239000	48574000	60165000	26038000	34128000	0	0	0	27440	2687	25986	171734;171735;171736;171737;171738	232359;232360;232361;232362;232363;232364;232365;232366;232367;232368	232360			10	
KGTMTTGHNVADLVVILK	2	Unmodified	1896.0503	0.050268017	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			70.324	68.861	3	7.0925E-05	57695	160511_QHF_FH_JSI10i_3	70.942	61.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27441	2324	25987	171739	232369	232369			1	
KGTPWEGGLFK	2	Unmodified	1218.6397	0.63970816	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			16							5	3	4	4	52.588	51.687	2;3	4.4958E-07	43206	160511_QHF_FH_JSI10i_3	116.77	79.29			1.098	1.0011	22.296	13	0	Median	1.3526	1.0975	22.725	4	0	Median	0.85586	1.0011	5.8379	3	0	Median	1.111	1.0649	8.1095	3	0	Median	0.72339	0.7326	15.029	3	0	Median	7331100000	3622800000	3708300000	1958500000	726740000	1231800000	1715300000	876960000	838330000	1625800000	767700000	858100000	2031500000	1251400000	780120000	27442	2063	25988	171740;171741;171742;171743;171744;171745;171746;171747;171748;171749;171750;171751;171752;171753;171754;171755	232370;232371;232372;232373;232374;232375;232376;232377;232378;232379;232380;232381;232382;232383;232384;232385;232386;232387;232388;232389;232390;232391;232392;232393;232394;232395;232396;232397;232398;232399;232400;232401;232402;232403;232404;232405;232406;232407;232408;232409;232410;232411;232412	232387			42	
KGTVEGFEPADNK	2	Unmodified	1390.6729	0.67285879	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.39	7	8	7				1	4	1	4	7	7	10	22.473	20.369	2;3	1.5174E-05	16978	160511_QHF_FH_JSI11i_3	106.32	94.709			0.93618	1.029	31.092	27	3	Median	1.3678	1.1594	11.025	4	0	Median	0.93618	1.1276	18.639	7	0	Median	1.0638	1.029	17.71	7	1	Median	0.5836	0.58972	18.459	9	2	Median	7866000000	4227700000	3638200000	647390000	272910000	374480000	1088300000	561110000	527240000	3181800000	1435900000	1745900000	2948500000	1957800000	990660000	27443	1466	25989	171756;171757;171758;171759;171760;171761;171762;171763;171764;171765;171766;171767;171768;171769;171770;171771;171772;171773;171774;171775;171776;171777;171778;171779;171780;171781;171782;171783	232413;232414;232415;232416;232417;232418;232419;232420;232421;232422;232423;232424;232425;232426;232427;232428;232429;232430;232431;232432;232433;232434;232435;232436;232437;232438;232439;232440;232441;232442;232443;232444;232445;232446;232447;232448;232449;232450;232451;232452;232453;232454	232417			41	
KGVAINFVK	2	Unmodified	974.5913	0.59130141	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	37.191	36.16	3	0.00091205	30580	160511_QHF_FH_JSI12i_3	49.715	33.512			1.8452	1.6284	63.799	3	1	Plateau	2.252	1.873	NaN	1	0	Median	0.45401	0.52432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0545	1.0661	NaN	1	0	Median	178010000	76831000	101180000	72132000	18416000	53716000	45788000	30382000	15406000	0	0	0	60092000	28032000	32060000	27444	1481	25990	171784;171785;171786	232455;232456;232457	232457			2	
KGVEPSPSPIKPGDIK	3	Unmodified	1647.9196	0.91957142	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		31.741	31.741	4	0.03918	27567	160511_QHF_FH_JSI11i_3	33.308	23.387			0.54199	0.51384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54199	0.51384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24185000	16357000	7828300	0	0	0	0	0	0	24185000	16357000	7828300	0	0	0	27445	3902	25991	171787	232458	232458			1	
KGVITVK	2	Unmodified	743.49052	0.49052473	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	10.609	10.297	2	0.053401	7963	160511_QHF_FH_JSI10i_3	42.396	10.441			0.79984	0.77638	42.986	4	0	Median	2.0031	1.589	NaN	1	0	Median	0.50344	0.58968	NaN	1	0	Median	0.7453	0.71332	NaN	1	0	Median	0.85837	0.84502	NaN	1	0	Median	1328200000	722620000	605620000	545620000	223180000	322440000	266930000	185760000	81165000	167400000	94201000	73203000	348300000	219480000	128820000	27446	980	25992	171788;171789;171790;171791	232459;232460	232459			2	
KGVLETFSGTETNK	2	Unmodified	1509.7675	0.76748745	5333	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.946	35.488	3	0.04898	29522	160511_QHF_FH_JSI10i_3	25.454	20.739			1.0956	1.2785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0956	1.2785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28147000	15250000	12897000	0	0	0	28147000	15250000	12897000	0	0	0	0	0	0	27447	5333	25993	171792	232461	232461			0	
KGVLFGVPGAFTPGCSK	2	Unmodified	1720.8971	0.89706184	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		70.556	69.828	3	0.03165	58760	160511_QHF_FH_JSI10i_3	38.996	34.894			0.61357	0.62487	7.8622	2	0	Median	NaN	NaN	NaN	0	0	Median	0.5137	0.59108	NaN	1	0	Median	0.73287	0.6606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104010000	57514000	46497000	0	0	0	51401000	32020000	19380000	52610000	25494000	27117000	0	0	0	27448	1335	25994	171793;171794	232462	232462			0	
KGVNLPGAAVDLPAVSEK	2	Unmodified	1763.9781	0.97814893	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.95	4.24	4	14	18					4	1	10	11	12	8	67.609	65.009	2;3	1.5276E-88	57986	160511_QHF_FH_JSI11i_3	218.78	188.84			0.81651	0.90826	22.585	21	21	Median	1.2775	1.0687	15.853	4	4	Median	0.76089	0.90446	4.0239	6	6	Median	0.95819	0.9259	8.5356	6	6	Median	0.5983	0.6157	19.514	5	5	Median	9037800000	4640300000	4397500000	838790000	344860000	493940000	3200700000	1735200000	1465500000	3840700000	1865500000	1975200000	1157500000	694700000	462850000	27449	1055	25995	171795;171796;171797;171798;171799;171800;171801;171802;171803;171804;171805;171806;171807;171808;171809;171810;171811;171812;171813;171814;171815;171816;171817;171818;171819;171820;171821;171822;171823;171824;171825;171826;171827;171828;171829;171830;171831;171832;171833;171834;171835	232463;232464;232465;232466;232467;232468;232469;232470;232471;232472;232473;232474;232475;232476;232477;232478;232479;232480;232481;232482;232483;232484;232485;232486;232487;232488;232489;232490;232491;232492;232493;232494;232495;232496;232497;232498;232499;232500;232501;232502;232503;232504;232505;232506;232507;232508;232509;232510;232511;232512	232468			50	
KGVQLQTHPNVDK	2	Unmodified	1462.7892	0.78922595	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		17.354	16.675	3;4	0.00011913	13312	160511_QHF_FH_JSI9i_3	61.409	51.876			1.1199	1.0304	37.53	5	1	Median	1.2743	1.0341	5.0467	2	0	Median	0.91681	1.0304	NaN	1	0	Median	0.74523	0.69885	61.459	2	1	Median	NaN	NaN	NaN	0	0	Median	573200000	268020000	305170000	162670000	67395000	95272000	101760000	59353000	42412000	308760000	141270000	167490000	0	0	0	27450	1620	25996	171836;171837;171838;171839;171840	232513;232514;232515;232516;232517	232516			5	
KGVVPGGGLK	2	Unmodified	910.56	0.56000128	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	2	3	16.558	16.034	2;3	0.011617	12433	160511_QHF_FH_JSI12i_3	42.395	33.181			0.97581	1.046	66.557	10	2	Median	2.2049	1.7914	29.886	3	0	Plateau	0.75773	0.914	20.49	2	0	Median	0.96971	0.91727	17.148	2	0	Median	0.28079	0.28336	97.659	3	2	Median	914060000	474560000	439500000	301870000	105120000	196750000	177530000	119030000	58503000	193180000	86538000	106640000	241480000	163870000	77611000	27451	571	25997	171841;171842;171843;171844;171845;171846;171847;171848;171849;171850	232518;232519;232520;232521;232522;232523;232524;232525;232526;232527	232526			10	
KGYDAPLCNLLLFK	2	Unmodified	1650.8803	0.88034914	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	90.13	90.042	3	0.0036606	78175	160511_QHF_FH_JSI12i_3	51.726	39.099			2.1444	2.3325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1444	2.3325	NaN	1	1	Median	8368000	2641400	5726500	0	0	0	0	0	0	0	0	0	8368000	2641400	5726500	27452	418	25998	171851	232528	232528			1	
KGYEVIYLTEPVDEYCIQALPEFDGK	2	Unmodified	3075.4787	0.47870558	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.93	100.95	3	3.2074E-20	87564	160511_QHF_FH_JSI12i_3	124.28	114.05			0.64211	0.65612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64211	0.65612	NaN	1	1	Median	68516000	53976000	14540000	0	0	0	0	0	0	0	0	0	68516000	53976000	14540000	27453	1057	25999	171852	232529	232529			1	
KGYNVNDEK	2	Unmodified	1065.5091	0.50908792	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								2	1	1	7.0878	6.8692	2	0.0082968	5085	160511_QHF_FH_JSI10i_2	60.436	14.718			0.72194	0.83199	25.412	4	0	Median	NaN	NaN	NaN	0	0	Median	0.72194	0.85257	4.0586	2	0	Median	0.89647	0.83553	NaN	1	0	Median	0.51089	0.51072	NaN	1	0	Median	281400000	158090000	123310000	0	0	0	86964000	52949000	34015000	141120000	71895000	69228000	53310000	33246000	20064000	27454	2101	26000	171853;171854;171855;171856	232530;232531;232532	232532			3	
KGYPEVALHFVK	2	Unmodified	1386.766	0.76597131	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	51.962	51.22	3;4	4.0699E-05	44880	160511_QHF_FH_JSI11i_3	82.543	76.82			1.1617	1.0978	41.068	7	1	Median	2.0412	1.6535	38.806	2	1	Median	0.93826	1.0859	NaN	1	0	Median	1.1879	1.1238	3.3082	2	0	Median	0.64973	0.66088	11.012	2	0	Median	796340000	401670000	394680000	255270000	86204000	169060000	116840000	64974000	51866000	182760000	93783000	88978000	241470000	156700000	84770000	27455	1805	26001	171857;171858;171859;171860;171861;171862;171863	232533;232534;232535;232536;232537;232538;232539;232540;232541;232542	232533			9	
KHDSGAADLER	1	Unmodified	1197.5738	0.57381344	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.9189	5.9189	2	0.0012037	3716	160511_QHF_FH_JSI11i_3	65.5	36.414			0.68967	0.65065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68967	0.65065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59973000	35336000	24637000	0	0	0	0	0	0	59973000	35336000	24637000	0	0	0	27456	5093	26002	171864	232543	232543			1	
KHDSGAADLER	1	Acetyl (K)	1239.5844	0.58437813	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.732							8	9	4	3	10	3	5	15.403	6.6573	2;3	1.7634E-09	6110	160513_QHF_FH_JSI12Kac_4	121.01	98.327			1.7553	2.0636	172.2	18	2	Median	3.004	2.5093	1.6465	2	0	Median	1.9127	2.2717	91.471	8	1	Median	0.47089	0.46725	4.6686	3	0	Median	0.37704	0.40056	198.96	5	1	Median	1198800000	765300000	433490000	53884000	13735000	40149000	398330000	129370000	268960000	117630000	79264000	38362000	628950000	542930000	86020000	27457	5093	26002	171865;171866;171867;171868;171869;171870;171871;171872;171873;171874;171875;171876;171877;171878;171879;171880;171881;171882;171883;171884;171885	232544;232545;232546;232547;232548;232549;232550;232551;232552;232553;232554;232555;232556;232557;232558;232559;232560;232561;232562;232563;232564;232565;232566;232567	232557	3309		24	
KHEETECPLR	1	Unmodified	1297.6085	0.60848439	172	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.526	78.858	1	0.048297	44036	160513_QHF_FH_JSI10Kac_6	23.955	1.8073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62284000	62284000	0	0	0	0	62284000	62284000	0	0	0	0	0	0	0	27458	172	26003	171886	232568	232568			1	
KHFDFVAK	2	Acetyl (K)	1032.5393	0.53926584	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.369	38.68	3	0.052951	21019	160513_QHF_FH_JSI11Kac_6	30.918	22.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5289500	5289500	0	0	0	0	0	0	0	5289500	5289500	0	0	0	0	27459	2535	26004	171887	232569	232569			1	
KHFEANNGK	2	Acetyl (K)	1085.5254	0.52540669	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		10.611	1.264	3	0.014549	3839	160513_QHF_FH_JSI11Kac_6	47.706	42.504			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2408100	2408100	0	0	0	0	0	0	0	2408100	2408100	0	0	0	0	27460	5215	26005	171888	232570	232570	3336		1	
KHFSQLK	2	Unmodified	886.50249	0.5024864	2805	Q32NC0	C18orf21	UPF0711 protein C18orf21	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		31.609	31.374	2	0.031813	28314	160511_QHF_FH_JSI11i_1	51.688	16.194			0.97046	0.92833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97046	0.92833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	311070000	170990000	140090000	0	0	0	0	0	0	311070000	170990000	140090000	0	0	0	27461	2805	26006	171889	232571	232571			1	
KHFTILDAPGHK	2	Acetyl (K)	1404.7514	0.75138388	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	1	0	0	1			By MS/MS		16	0									1			1		51.077	41.357	3	0.0012447	22414	160513_QHF_FH_JSI11Kac_6	87.498	73.469			0.21649	0.21271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21649	0.21271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19872000	16869000	3002600	0	0	0	0	0	0	19872000	16869000	3002600	0	0	0	27462	1069;3467	26007	171890	232572	232572	904;2864		1	
KHFVGYPTNSDFELK	2	Acetyl (K)	1822.889	0.88899957	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.738	61.274	3	0.00062349	33206	160513_QHF_FH_JSI11Kac_6	88.768	78.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27463	2581	26008	171891	232573	232573	2553		1	
KHGVVPLATYMR	1	Acetyl (K)	1412.7598	0.75984008	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		61.397	52.124	2;3	0.0061597	28272	160513_QHF_FH_JSI11Kac_6	68.893	30.59			0.57025	0.6128	126.75	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2604	1.5017	NaN	1	0	Median	0.258	0.25008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34240000	25328000	8912500	0	0	0	8284400	4280700	4003700	25956000	21047000	4908900	0	0	0	27464	1591	26009	171892;171893;171894	232574;232575	232575	1611		2	
KHGVYNPNK	2	Acetyl (K)	1097.5618	0.56179219	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		13.494	4.2024	2	0.061099	4933	160513_QHF_FH_JSI11Kac_6	51.854	33.819			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7068900	7068900	0	0	0	0	0	0	0	7068900	7068900	0	0	0	0	27465	1504	26010	171895	232576	232576			1	
KHIMGQNVADYMR	1	Acetyl (K);Oxidation (M)	1619.7548	0.75483105	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	1	1		By matching	By MS/MS		16	0									3		1	2		46.1	36.774	3	0.0031701	21198	160513_QHF_FH_JSI11Kac_6	62.162	53.166			0.064238	0.060837	161.3	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1147	1.3148	NaN	1	0	Median	0.11113	0.10827	102.35	2	1	Median	NaN	NaN	NaN	0	0	Median	34116000	28592000	5524700	0	0	0	5996200	2894400	3101700	28120000	25697000	2422900	0	0	0	27466	1590	26011	171896;171897;171898	232577;232578	232578	1605	1250;1251	2	
KHIMGQNVADYMR	1	Acetyl (K);2 Oxidation (M)	1635.7497	0.74974567	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	2	1			By MS/MS		16	0									1			1		34.026	24.659	3	0.0062107	13909	160513_QHF_FH_JSI11Kac_6	48.467	40.922			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6261700	6261700	0	0	0	0	0	0	0	6261700	6261700	0	0	0	0	27467	1590	26011	171899	232579	232579	1605	1250;1251	1	
KHIMGQNVADYMR	1	Acetyl (K)	1603.7599	0.75991643	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	59.413	49.968	2;3	9.0632E-07	27188	160513_QHF_FH_JSI11Kac_6	138.75	108.19			17.249	20.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17.249	20.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	279250000	235500000	43750000	0	0	0	46534000	2784500	43750000	230490000	230490000	0	2229500	2229500	0	27468	1590	26011	171900;171901;171902;171903	232580;232581;232582;232583	232581	1605		4	
KHLEINPDHPIVETLR	1	Acetyl (K)	1952.048	0.047959831	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	67.49	58.39	2;3;4	1.6619E-10	30609	160513_QHF_FH_JSI12Kac_6	130.27	113.38			0.66257	0.66105	100.85	8	2	Median	0.79211	0.66992	13.009	2	0	Median	0.28779	0.34209	104.29	2	1	Median	0.18775	0.17647	164.84	2	1	Median	0.88016	0.93803	3.8635	2	0	Median	1186700000	853190000	333550000	157030000	94656000	62374000	467070000	373000000	94070000	342080000	271330000	70746000	220560000	114200000	106360000	27469	898	26012	171904;171905;171906;171907;171908;171909;171910;171911;171912	232584;232585;232586;232587;232588;232589;232590;232591;232592;232593;232594;232595;232596	232591	647		13	
KHLEINPDHSIIETLR	1	Acetyl (K)	1956.0429	0.042874453	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	72.601	63.77	3;4	4.8466E-52	35082	160513_QHF_FH_JSI10Kac_6	189.87	158.91			0.63956	0.65347	76.623	9	3	Median	0.98879	0.84593	36.506	2	1	Median	0.55483	0.65949	8.6963	2	0	Median	0.6339	0.60213	114.44	3	2	Median	0.88272	0.93751	4.0377	2	0	Median	859420000	512880000	346540000	87591000	43801000	43789000	308310000	196440000	111860000	302650000	189730000	112920000	160880000	82909000	77970000	27470	880	26013	171913;171914;171915;171916;171917;171918;171919;171920;171921	232597;232598;232599;232600;232601;232602;232603;232604;232605;232606;232607	232606	599		11	
KHPDASVNFSEFSK	2	Unmodified	1591.7631	0.76307078	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.4		3	26						8	7	10	8	12	41.636	39.041	2;3;4	1.1004E-29	32456	160511_QHF_FH_JSI12i_3	168.31	51.762			0.91378	0.82588	31.598	33	11	Median	0.99599	0.85717	30.059	7	1	Median	0.6385	0.77488	33.356	9	2	Median	0.95243	0.89905	34.132	6	1	Median	0.91378	0.96847	33.626	11	7	Median	12957000000	7043600000	5913300000	1189700000	531880000	657850000	2463700000	1475900000	987840000	2768200000	1566400000	1201800000	6535200000	3469500000	3065800000	27471	928	26014	171922;171923;171924;171925;171926;171927;171928;171929;171930;171931;171932;171933;171934;171935;171936;171937;171938;171939;171940;171941;171942;171943;171944;171945;171946;171947;171948;171949;171950;171951;171952;171953;171954;171955;171956;171957;171958	232608;232609;232610;232611;232612;232613;232614;232615;232616;232617;232618;232619;232620;232621;232622;232623;232624;232625;232626;232627;232628;232629;232630;232631;232632;232633;232634;232635;232636;232637;232638;232639;232640;232641;232642;232643;232644;232645;232646;232647;232648;232649;232650;232651;232652;232653;232654;232655;232656;232657;232658;232659;232660;232661;232662;232663;232664;232665;232666;232667;232668;232669;232670;232671;232672;232673;232674;232675;232676;232677;232678;232679;232680;232681;232682;232683;232684;232685;232686;232687	232664			78	
KHPDASVNFSEFSKK	3	Acetyl (K)	1761.8686	0.86859848	928	P09429	HMGB1	High mobility group protein B1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	53.025	43.646	3	0.00051896	23620	160513_QHF_FH_JSI11Kac_6	87.138	61.819			0.52288	0.55699	147.59	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3685	1.5815	NaN	1	0	Median	0.19979	0.19617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59508000	45469000	14039000	0	0	0	14431000	6526300	7904400	39203000	33069000	6134700	5874300	5874300	0	27472	928	26015	171959;171960;171961	232688;232689;232690;232691;232692;232693	232689	683		6	
KHPDFPK	2	Unmodified	867.46029	0.46028724	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	10.006	9.7379	2;3	0.032869	7766	160511_QHF_FH_JSI10i_3	32.841	16.064			1.1104	1.2357	90.645	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56371	0.65095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1874	2.3457	NaN	1	1	Median	86830000	43411000	43419000	0	0	0	66497000	38048000	28449000	0	0	0	20333000	5362600	14970000	27473	1117	26016	171962;171963	232694;232695	232694			2	
KHPDSSVNFAEFSK	2	Unmodified	1591.7631	0.76307078	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	3.99		4	14						2	4	8	4	4	39.11	37.537	2;3	1.1602E-07	31420	160511_QHF_FH_JSI10i_3	88.507	70.879			0.90214	0.86082	39.475	19	6	Median	1.0193	0.86556	15.507	4	2	Median	0.76035	0.9303	47.253	7	3	Median	0.74914	0.70581	44.676	4	1	Median	0.75031	0.77293	35.811	4	0	Median	2946300000	1515200000	1431100000	265800000	147010000	118790000	745380000	389860000	355510000	598560000	297870000	300680000	1336600000	680500000	656080000	27474	1280	26017	171964;171965;171966;171967;171968;171969;171970;171971;171972;171973;171974;171975;171976;171977;171978;171979;171980;171981;171982;171983	232696;232697;232698;232699;232700;232701;232702;232703;232704;232705;232706;232707;232708;232709;232710;232711;232712;232713;232714;232715;232716;232717;232718;232719;232720;232721;232722;232723;232724;232725;232726;232727	232705			31	
KHPELITFK	2	Unmodified	1111.639	0.63897988	5019	Q9NUY8	TBC1D23	TBC1 domain family member 23	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	30.655	30.623	3	0.019541	26500	160511_QHF_FH_JSI11i_3	32.999	20.383			0.67093	0.6491	14.726	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61599	0.58491	NaN	1	0	Median	0.73077	0.72033	NaN	1	0	Median	52088000	32998000	19089000	0	0	0	0	0	0	24887000	17073000	7814200	27201000	15926000	11275000	27475	5019	26018	171984;171985;171986	232728;232729	232728			2	
KHPTVLFVYGGPQVQLVNNSFK	2	Unmodified	2471.3325	0.33251453	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	79.612	71.61	2;3;4	1.2502E-37	39737	160513_QHF_FH_JSI10Kac_6	169.05	153.37			0.91375	0.89561	13.792	8	0	Median	0.9708	0.83834	0.71342	2	0	Median	0.7573	0.89561	3.9606	2	0	Median	0.89718	0.88888	8.4929	2	0	Median	1.0049	1.0912	21.238	2	0	Median	706610000	426460000	280150000	107010000	58708000	48306000	514600000	321040000	193550000	56820000	32036000	24783000	28186000	14675000	13510000	27476	3308	26019	171987;171988;171989;171990;171991;171992;171993;171994;171995	232730;232731;232732;232733;232734;232735;232736;232737;232738;232739;232740;232741	232739			12	
KHSQFIGYPITLFVEK	2	Acetyl (K)	1948.0458	0.045834566	880;2871	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	no	no	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	87.47	78.088	3	0.00067842	43391	160513_QHF_FH_JSI11Kac_6	90.422	78.521			0.31165	0.31335	23.858	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28256	0.2647	NaN	1	0	Median	0.34373	0.37093	NaN	1	0	Median	236250000	179820000	56435000	0	0	0	0	0	0	178470000	136120000	42356000	57781000	43702000	14078000	27477	880;2871	26020	171996;171997	232742;232743;232744	232742	613		3	
KHSQFIGYPITLYLEK	2	Acetyl (K)	1978.0564	0.056399252	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	84.83	76.403	2;3	5.5838E-43	42033	160513_QHF_FH_JSI11Kac_6	188.25	144.96			0.43395	0.41383	96.834	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6073	1.9012	NaN	1	0	Median	0.37932	0.36126	19.213	2	0	Median	NaN	NaN	NaN	0	0	Median	578870000	421560000	157310000	0	0	0	135890000	56387000	79505000	386890000	309080000	77807000	56091000	56091000	0	27478	898	26021	171998;171999;172000;172001	232745;232746;232747;232748;232749	232747	653		5	
KHTGYVGLK	2	Unmodified	1001.5658	0.56581494	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.098	10.193	3	0.058433	7553	160511_QHF_FH_JSI12i_3	28.958	22.063			1.0006	1.0059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0006	1.0059	NaN	1	0	Median	106780000	53938000	52841000	0	0	0	0	0	0	0	0	0	106780000	53938000	52841000	27479	3922	26022	172002	232750	232750			0	
KHTLSYVDVGTGK	2	Acetyl (K)	1445.7514	0.75144346	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	46.199	36.878	2;3	0.00038657	20107	160513_QHF_FH_JSI11Kac_6	96.64	68.627			1.2278	1.3248	228.56	2	1	Median	NaN	NaN	NaN	0	0	Median	5.6134	6.6688	NaN	1	1	Median	0.26856	0.26319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56353000	45918000	10434000	0	0	0	6350600	1322600	5028000	50002000	44596000	5406400	0	0	0	27480	1367	26023	172003;172004;172005;172006	232751;232752;232753;232754;232755	232753	1303		5	
KHVSLNK	2	Unmodified	824.48684	0.48683634	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	4.9009	4.9934	3	0.02185	2515	160511_QHF_FH_JSI12i_3	38.322	25.966			0.5832	0.59882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5832	0.59882	NaN	1	1	Median	284800000	178970000	105830000	0	0	0	0	0	0	0	0	0	284800000	178970000	105830000	27481	2094	26024	172007;172008	232756;232757	232757			2	
KIDAAQNWLADPNGGPEGEEQIR	1	Unmodified	2507.2041	0.20407913	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	62.324	61.639	2;3	7.8809E-20	54540	160511_QHF_FH_JSI10i_2	148.29	145.14			0.96183	0.98308	7.3092	6	1	Median	1.0371	0.8827	NaN	1	0	Median	0.82648	0.99135	6.3633	2	1	Median	1.0014	0.97622	6.1678	2	0	Median	0.93359	1.0695	NaN	1	0	Median	965460000	492130000	473330000	169000000	86539000	82458000	247200000	148600000	98598000	476060000	214180000	261880000	73205000	42812000	30393000	27482	1139	26025	172009;172010;172011;172012;172013;172014;172015	232758;232759;232760;232761;232762;232763;232764;232765;232766;232767;232768;232769;232770;232771;232772;232773;232774;232775;232776;232777	232773			20	
KIDASQTEFEK	2	Unmodified	1294.6405	0.64049603	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.492		10	7							3	4	5	5	24.474	23.962	2;3	8.4044E-06	20266	160511_QHF_FH_JSI11i_3	83.182	64.124			0.861	0.93871	51.06	17	16	Median	1.1936	1.019	52.33	3	3	Median	0.97443	1.1931	40.476	4	4	Median	0.861	0.87283	48.39	5	4	Median	0.56241	0.57643	69.826	5	5	Median	2924300000	1607400000	1316800000	262490000	146080000	116410000	488460000	257360000	231100000	680770000	341530000	339240000	1492500000	862450000	630080000	27483	636	26026	172016;172017;172018;172019;172020;172021;172022;172023;172024;172025;172026;172027;172028;172029;172030;172031;172032	232778;232779;232780;232781;232782;232783;232784;232785;232786;232787;232788;232789;232790;232791;232792;232793;232794;232795;232796;232797;232798	232779			21	
KIDFLTK	2	Unmodified	863.51165	0.5116541	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.777	37.614	3	0.01408	32012	160511_QHF_FH_JSI12i_3	41.029	16.874			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27484	4274	26027	172033	232799	232799			1	
KIDGLLIDQIQR	1	Unmodified	1410.8195	0.81946344	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	63.701	62.797	2;3	8.1518E-06	52476	160511_QHF_FH_JSI10i_3	105.65	94.038			0.92373	0.95127	30.89	8	2	Median	1.4908	1.1926	42.355	3	1	Median	0.97736	1.1297	2.0094	2	0	Median	0.87373	0.81247	0.0042623	2	0	Median	0.59015	0.5962	NaN	1	1	Median	554480000	273090000	281390000	118190000	65474000	52717000	178150000	87632000	90521000	202250000	87174000	115070000	55894000	32810000	23083000	27485	2104	26028	172034;172035;172036;172037;172038;172039;172040;172041;172042	232800;232801;232802;232803;232804;232805;232806;232807;232808;232809;232810;232811;232812	232805			13	
KIDGQQTIIACIESHQFQAK	2	Unmodified	2314.174	0.17396498	1606	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		69.925	68.942	3	1.8007E-10	56783	160511_QHF_FH_JSI9i_3	122.22	113.83			0.66608	0.77282	50.43	3	1	Median	1.0318	0.85498	NaN	1	0	Median	0.66608	0.77282	NaN	1	0	Median	0.35615	0.34086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108360000	70342000	38022000	23243000	11189000	12054000	42740000	27304000	15436000	42382000	31849000	10533000	0	0	0	27486	1606	26029	172043;172044;172045	232813;232814;232815;232816;232817;232818	232818			6	
KIDKYTEVLK	3	Acetyl (K)	1277.7231	0.72310344	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.639							1	4	2	1	2	2	2	55.304	44.907	3	1.0765E-05	24770	160513_QHF_FH_JSI11Kac_5	107.06	57.555			0.64666	0.71185	39.575	7	0	Median	0.98012	0.83069	NaN	1	0	Median	0.95959	1.135	6.486	2	0	Median	0.44728	0.44109	1.5321	2	0	Median	0.60978	0.66571	9.4773	2	0	Median	124090000	75354000	48734000	8274700	4008600	4266100	27538000	15011000	12527000	63924000	43311000	20613000	24351000	13024000	11327000	27487	1497	26030	172046;172047;172048;172049;172050;172051;172052	232819;232820;232821;232822;232823;232824;232825;232826;232827;232828;232829;232830	232824	1514;1515		11	
KIDPNMK	2	Unmodified	844.44767	0.44767364	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	9.9021	9.9494	2	0.045398	7535	160511_QHF_FH_JSI11i_3	45.081	28.928			1.0514	1.0232	6.4491	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0431	0.97758	NaN	1	0	Median	1.0597	1.0709	NaN	1	0	Median	315560000	161590000	153970000	0	0	0	0	0	0	118970000	58240000	60725000	196600000	103350000	93247000	27488	5725	26031	172053;172054	232831;232832	232831			2	
KIDQEGKIPDETLEK	3	Unmodified	1741.9098	0.90979459	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	2			By MS/MS		3	0			3									3		32.87	32.87	3;4	0.01973	28527	160511_QHF_FH_JSI11i_3	48.623	25.142			0.62897	0.59046	44.473	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62897	0.59046	44.473	3	3	Median	NaN	NaN	NaN	0	0	Median	168690000	94570000	74118000	0	0	0	0	0	0	168690000	94570000	74118000	0	0	0	27489	4777	26032	172055;172056;172057	232833;232834;232835	232834			3	
KIDSAPLALLHK	2	Unmodified	1304.7816	0.78162138	199	O14757	CHEK1	Serine/threonine-protein kinase Chk1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.762	51.527	3	8.6452E-05	44155	160511_QHF_FH_JSI12i_3	76.073	64.49			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27490	199	26033	172058	232836	232836			1	
KIDYFER	1	Unmodified	969.49198	0.4919813	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							2	3	2		28.233	27.328	2;3	0.0022709	23268	160511_QHF_FH_JSI11i_3	75.213	21.658			0.73078	0.85895	32.682	7	1	Median	1.7274	1.3826	25.287	2	1	Median	0.8098	0.95	12.768	3	0	Plateau	0.68406	0.66351	2.0737	2	0	Median	NaN	NaN	NaN	0	0	Median	1920100000	975500000	944560000	369960000	184370000	185590000	498480000	300260000	198220000	1051600000	490860000	560750000	0	0	0	27491	2502	26034	172059;172060;172061;172062;172063;172064;172065	232837;232838;232839;232840;232841;232842;232843;232844;232845;232846;232847;232848;232849	232839			13	
KIEALLNLPR	1	Unmodified	1165.7183	0.71829284	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		60.118	59.102	3	9.3896E-05	52026	160511_QHF_FH_JSI11i_3	76.143	67.838			0.82257	0.95078	16.468	3	0	Plateau	1.1564	0.95078	NaN	1	0	Median	0.92687	1.0601	NaN	1	0	Median	0.82257	0.76698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157190000	85989000	71201000	42377000	20304000	22073000	47629000	27221000	20408000	67184000	38464000	28720000	0	0	0	27492	4907	26035	172066;172067;172068	232850;232851;232852;232853;232854;232855	232850			6	
KIEDLGAAMEEALILDNK	2	Unmodified	1972.0187	0.018693117	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	94.762	94.759	3	7.2242E-06	81976	160511_QHF_FH_JSI12i_3	85.937	76.406			1.215	1.1987	17.927	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1397	1.056	NaN	1	0	Median	1.2953	1.3607	NaN	1	0	Median	63792000	31782000	32010000	0	0	0	0	0	0	15018000	6946000	8072100	48774000	24836000	23938000	27493	2470	26036	172069;172070	232856;232857;232858	232857			2	
KIEDLIK	2	Unmodified	857.52222	0.52221879	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	1	3	31.237	30.432	3	0.0028936	25744	160511_QHF_FH_JSI11i_2	70.525	10.047			0.65762	0.81197	99.95	5	5	Median	NaN	NaN	NaN	0	0	Median	0.65762	0.81197	NaN	1	1	Median	0.55299	0.55201	NaN	1	1	Median	1.9837	2.1638	124.34	3	3	Median	128300000	63040000	65258000	0	0	0	29085000	12847000	16238000	51280000	30120000	21160000	47934000	20074000	27860000	27494	586	26037	172071;172072;172073;172074;172075	232859;232860;232861;232862;232863	232861			5	
KIEEAMDGSETPQLFTVLPEK	2	Unmodified	2361.1774	0.1773786	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	1	3	3	81.48	80.955	3	1.3708E-22	72136	160511_QHF_FH_JSI11i_3	160.77	153.23			0.84461	1.011	19.22	8	3	Linear	0.93408	0.79583	NaN	1	0	Median	0.71526	0.88886	NaN	1	0	Median	0.99214	0.97992	25.437	3	1	Plateau	1.0248	1.024	24.725	3	2	Plateau	1304400000	691020000	613390000	147270000	75122000	72143000	212380000	132130000	80253000	448870000	215430000	233440000	495900000	268340000	227560000	27495	2412	26038	172076;172077;172078;172079;172080;172081;172082;172083	232864;232865;232866;232867;232868;232869;232870;232871;232872;232873;232874;232875;232876;232877	232865			14	
KIEEFLSSFEEK	2	Unmodified	1484.7399	0.73987572	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	4	2	65.936	65.575	2;3	8.8182E-07	56678	160511_QHF_FH_JSI12i_3	180.18	146.22			0.42593	0.41036	51.673	8	8	Median	0.33023	0.2872	NaN	1	1	Median	1.1476	1.4021	NaN	1	1	Median	0.45837	0.43149	14.965	4	4	Median	0.30281	0.30407	3.9761	2	2	Median	822900000	517630000	305270000	31899000	21884000	10015000	51720000	27443000	24277000	473570000	291640000	181930000	265710000	176660000	89050000	27496	387	26039	172084;172085;172086;172087;172088;172089;172090;172091	232878;232879;232880;232881;232882;232883;232884;232885	232885			8	
KIEEQLTLEK	2	Unmodified	1229.6867	0.68671794	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	2	4	3	34.23	33.687	2;3	1.3225E-07	29695	160511_QHF_FH_JSI10i_2	120.77	62.912			0.74708	0.80704	42.18	11	4	Median	0.66375	0.56949	42.75	2	1	Median	0.69195	0.83532	1.4988	2	1	Median	0.79843	0.76514	54.018	4	2	Median	1.3517	1.3612	27.641	3	0	Plateau	1755500000	858830000	896680000	258800000	157060000	101740000	347610000	205990000	141620000	442660000	186100000	256560000	706440000	309680000	396770000	27497	1363	26040	172092;172093;172094;172095;172096;172097;172098;172099;172100;172101;172102	232886;232887;232888;232889;232890;232891;232892;232893;232894;232895;232896;232897;232898	232893			13	
KIEFGVVYSCVEGK	2	Unmodified	1613.8123	0.81232916	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	61.097	60.914	2;3	0.00019767	52507	160511_QHF_FH_JSI12i_3	113.65	90.413			1.1583	1.1578	51.035	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66203	0.61953	NaN	1	0	Median	1.3968	1.4042	27.296	2	1	Median	198290000	97291000	100990000	0	0	0	0	0	0	66681000	40606000	26075000	131600000	56685000	74919000	27498	1317	26041	172103;172104;172105	232899;232900	232900			2	
KIEFPLPDEK	2	Unmodified	1214.6547	0.65468953	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	56.175	55.568	2;3	2.9262E-06	47471	160511_QHF_FH_JSI12i_3	111.06	81.895			1.0737	1.08	37.066	5	3	Median	0.93539	0.79059	NaN	1	1	Median	1.8652	2.1194	NaN	1	1	Median	1.1941	1.1111	NaN	1	0	Median	1.0134	1.0213	7.9054	2	1	Median	712020000	355040000	356980000	70424000	43956000	26468000	13489000	3798000	9691300	102170000	43093000	59080000	525930000	264190000	261740000	27499	1983	26042	172106;172107;172108;172109;172110	232901;232902;232903;232904;232905;232906;232907;232908;232909;232910;232911;232912;232913;232914	232909			14	
KIEFPMPNEEAR	1	Unmodified	1459.7129	0.71294946	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							1	4	3		52.435	51.498	2;3	0.00026849	43100	160511_QHF_FH_JSI10i_3	65.295	52.734			0.92432	0.96335	22.795	6	4	Median	NaN	NaN	NaN	0	0	Median	0.92202	1.1087	24.793	4	3	Median	0.92432	0.87258	4.4534	2	1	Median	NaN	NaN	NaN	0	0	Median	627580000	334810000	292770000	0	0	0	294560000	154160000	140410000	333020000	180650000	152360000	0	0	0	27500	1131	26043	172111;172112;172113;172114;172115;172116;172117;172118	232915;232916;232917;232918;232919;232920;232921;232922;232923;232924;232925;232926;232927	232922			13	
KIEFPPPNEEAR	1	Unmodified	1425.7252	0.72522871	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	1			By MS/MS		3	0			4									4		37.037	37.037	2;3	0.0055658	32131	160511_QHF_FH_JSI11i_3	58.223	33.432			0.87088	0.8104	14.61	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87088	0.8104	14.61	2	2	Median	NaN	NaN	NaN	0	0	Median	91098000	44124000	46974000	0	0	0	0	0	0	91098000	44124000	46974000	0	0	0	27501	1984	26044	172119;172120;172121;172122	232928;232929;232930;232931	232930			4	
KIEFQPPEAK	2	Unmodified	1185.6394	0.63937381	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	35.993	35.422	2;3	0.011301	30169	160511_QHF_FH_JSI12i_3	30.55	19.94			1.004	1.0148	76.237	3	2	Median	NaN	NaN	NaN	0	0	Median	0.34012	0.41153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.362	1.3787	43.344	2	1	Median	190670000	95057000	95610000	0	0	0	79010000	62066000	16944000	0	0	0	111660000	32991000	78666000	27502	4582	26045	172123;172124;172125	232932;232933;232934;232935	232934			4	
KIEFSLPDLEGR	1	Unmodified	1402.7456	0.7456298	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							4	3	3	1	75.614	74.799	2;3	9.8022E-07	66707	160511_QHF_FH_JSI11i_3	126.76	108.9			0.96077	0.9503	10.885	11	0	Median	1.2243	1.014	12.463	4	0	Median	0.7856	0.9503	5.767	3	0	Median	1.0382	0.99912	7.344	3	0	Plateau	0.75064	0.77638	NaN	1	0	Median	1662800000	878550000	784210000	273530000	133180000	140350000	383610000	210310000	173300000	861560000	446160000	415390000	144070000	88904000	55168000	27503	1449	26046	172126;172127;172128;172129;172130;172131;172132;172133;172134;172135;172136	232936;232937;232938;232939;232940;232941;232942;232943;232944;232945;232946;232947;232948;232949;232950;232951;232952;232953;232954;232955;232956	232939			21	
KIEFVVVGPEAPLAAGIVGNLR	1	Unmodified	2248.2943	0.29433811	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.17	6.26		1	3						2	2	3	1		97.696	95.721	2;3	1.7821E-17	48289	160513_QHF_FH_JSI10Kac_6	100.94	85.462			1.1034	1.0757	15.695	6	0	Median	1.2928	1.0796	7.6628	2	0	Median	0.9524	1.1316	23.416	3	0	Median	1.0689	0.98848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	542930000	265630000	277300000	197730000	87053000	110680000	231260000	118110000	113150000	113950000	60473000	53472000	0	0	0	27504	1205	26047	172137;172138;172139;172140;172141;172142	232957;232958;232959;232960;232961;232962;232963;232964	232963			8	
KIEHDVVMK	2	Unmodified	1097.5903	0.59031513	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		3	12							3	3	5	4	13.018	12.718	2;3	0.00019181	9806	160511_QHF_FH_JSI11i_3	94.692	70.537			1.0628	0.97271	80.954	15	5	Median	1.0693	0.90576	67.912	3	0	Median	1.0628	1.2453	20.439	3	0	Median	0.74583	0.73235	95.165	5	3	Median	1.0629	1.0556	106.57	4	2	Median	3065100000	1525300000	1539700000	141330000	60761000	80568000	402870000	211150000	191720000	1063400000	614000000	449420000	1457400000	639410000	818030000	27505	5454	26048	172143;172144;172145;172146;172147;172148;172149;172150;172151;172152;172153;172154;172155;172156;172157	232965;232966;232967;232968;232969;232970;232971;232972;232973;232974;232975;232976;232977;232978;232979;232980	232965			16	
KIEHDVVMK	2	Oxidation (M)	1113.5852	0.58522975	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	0	0	1	1		By matching		By MS/MS	3	0			3								1		2	9.6677	9.5466	3	0.0030385	5529	160511_QHF_FH_JSI12i_3	51.276	30.973			0.85454	0.86472	61.658	3	1	Median	NaN	NaN	NaN	0	0	Median	0.63387	0.73145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3951	1.4075	68.899	2	1	Median	454560000	201070000	253490000	0	0	0	71130000	35602000	35528000	0	0	0	383430000	165460000	217970000	27506	5454	26048	172158;172159;172160	232981;232982;232983	232981		2665	3	
KIEIDNGDELTADFLYEEVHPK	2	Unmodified	2574.249	0.24896364	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	87.496	87.431	4	0.0030698	78292	160511_QHF_FH_JSI11i_3	37.817	34.602			0.92743	0.91442	36.169	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2371	1.1809	NaN	1	0	Median	0.69526	0.70807	NaN	1	0	Median	63108000	28295000	34813000	0	0	0	0	0	0	29730000	12917000	16813000	33378000	15377000	18000000	27507	2306	26049	172161;172162	232984;232985	232984			1	
KIEISQHAK	2	Unmodified	1052.5978	0.59784335	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.4		4	10						8	8	4	6	4	10.266	7.8464	2;3	2.78E-06	6554	160511_QHF_FH_JSI9i_3	105.2	80.058			0.80375	0.83471	59.287	18	8	Median	1.2359	1.065	28.59	5	2	Median	0.68687	0.77568	50.096	4	1	Median	0.85867	0.84339	93.51	6	5	Median	0.56863	0.56733	22.457	3	0	Plateau	32780000000	15626000000	17155000000	5262700000	2046200000	3216500000	5723100000	3019800000	2703300000	12855000000	6341600000	6513700000	8939100000	4218100000	4721000000	27508	1956	26050	172163;172164;172165;172166;172167;172168;172169;172170;172171;172172;172173;172174;172175;172176;172177;172178;172179;172180;172181;172182;172183;172184	232986;232987;232988;232989;232990;232991;232992;232993;232994;232995;232996;232997;232998;232999;233000;233001;233002;233003;233004;233005;233006;233007;233008;233009;233010;233011;233012;233013;233014;233015;233016;233017;233018;233019;233020;233021;233022;233023;233024;233025	233003			40	
KIELDVK	2	Unmodified	843.50657	0.50656873	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	25.963	25.947	3	0.031725	22364	160511_QHF_FH_JSI11i_3	28.174	0			1.2198	1.1726	7.0432	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2183	1.1157	NaN	1	0	Median	1.2213	1.2325	NaN	1	0	Median	172200000	71943000	100260000	0	0	0	0	0	0	69924000	40028000	29896000	102280000	31915000	70361000	27509	5310	26051	172185;172186	233026	233026			1	
KIENIHIGEK	2	Unmodified	1179.6612	0.66117189	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	21.245	20.635	2;3	0.0032632	17145	160511_QHF_FH_JSI11i_3	51.841	38.407			1.0052	0.96525	69.198	6	4	Median	2.8533	2.3667	NaN	1	1	Median	0.89701	1.0314	99.623	2	2	Median	1.0052	0.96525	52.545	2	1	Median	0.52188	0.53645	NaN	1	0	Median	561640000	275560000	286080000	71734000	21122000	50612000	141000000	67875000	73121000	205810000	88930000	116880000	143100000	97637000	45464000	27510	107	26052	172187;172188;172189;172190;172191;172192	233027;233028;233029;233030;233031;233032;233033	233029			7	
KIENLCAMGFDR	1	Unmodified	1452.6854	0.6853545	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		50.067	49.284	3	0.0026874	43491	160511_QHF_FH_JSI11i_3	39.509	25.83			0.83104	0.86722	24.274	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88481	1.0296	NaN	1	0	Median	0.78053	0.73044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203350000	104800000	98552000	0	0	0	43023000	20032000	22992000	160330000	84770000	75561000	0	0	0	27511	1936	26053	172193;172194	233034;233035	233034			2	
KIENSELLDK	2	Unmodified	1187.6398	0.63976774	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		25.065	25.065	2	0.0077275	21255	160511_QHF_FH_JSI11i_3	51.268	21.013			0.91366	0.8508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91366	0.8508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53656000	30405000	23251000	0	0	0	0	0	0	53656000	30405000	23251000	0	0	0	27512	3250	26054	172195	233036	233036			1	
KIENVPTGPNNKPK	3	Unmodified	1534.8467	0.84674083	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		14.82	14.324	3;4	0.00079852	11445	160511_QHF_FH_JSI11i_3	81.185	70.015			0.62135	0.56897	25.977	4	4	Linear	0.87284	0.70888	NaN	1	1	Median	0.91707	1.0468	NaN	1	1	Median	0.62773	0.60569	4.8802	2	2	Median	NaN	NaN	NaN	0	0	Median	564780000	302260000	262520000	110530000	59752000	50777000	110500000	56946000	53552000	343750000	185560000	158190000	0	0	0	27513	335	26055	172196;172197;172198;172199	233037;233038;233039;233040	233037			4	
KIEPEAVLQTR	1	Unmodified	1282.7245	0.72450043	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.75	0.433		1	3								3		1	39.623	38.739	2;3	0.002192	32392	160511_QHF_FH_JSI10i_3	52.555	39.928			0.83233	0.9038	5.6855	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78083	0.9293	3.9347	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85959	0.85282	NaN	1	0	Median	124100000	65811000	58292000	0	0	0	81051000	46879000	34173000	0	0	0	43051000	18932000	24119000	27514	4719	26056	172200;172201;172202;172203	233041;233042;233043	233042			3	
KIEPELDGSAQVTSHDASTNGLINFIK	2	Unmodified	2883.4614	0.46141603	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.464		5	11							1	3	7	5	78.52	77.97	3;4	3.1481E-151	69682	160511_QHF_FH_JSI11i_3	286.61	277.15			0.88376	0.9103	15.07	13	3	Median	1.0232	0.88883	NaN	1	0	Median	0.88258	1.0215	7.9535	3	0	Median	0.97386	0.93419	6.7311	5	2	Median	0.82159	0.83354	27.825	4	1	Median	5983800000	3249200000	2734600000	134090000	62792000	71294000	509470000	257700000	251760000	3016700000	1559100000	1457600000	2323600000	1369500000	954020000	27515	856	26057	172204;172205;172206;172207;172208;172209;172210;172211;172212;172213;172214;172215;172216;172217;172218;172219	233044;233045;233046;233047;233048;233049;233050;233051;233052;233053;233054;233055;233056;233057;233058;233059;233060;233061;233062;233063;233064;233065;233066;233067;233068;233069;233070;233071;233072;233073;233074;233075;233076;233077;233078;233079;233080;233081;233082;233083;233084;233085;233086;233087;233088	233052			45	
KIEPELDGSSPVTSHDSSTNGLINFIK	2	Unmodified	2884.4454	0.44543162	75	CON__Q3ZBD7			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		6	10							3	4	6	3	79.93	79.459	3;4	1.4482E-17	70320	160511_QHF_FH_JSI11i_3	101.45	91.465		+	0.94599	0.9572	29.228	16	7	Median	1.0894	0.94124	56.664	3	2	Plateau	0.92423	1.0789	10.519	4	2	Median	0.93323	0.82087	13.08	6	2	Linear	0.74646	0.75382	6.5084	3	1	Median	2317600000	1221100000	1096500000	206130000	107770000	98362000	423790000	285990000	137790000	1347800000	647950000	699870000	339860000	179420000	160440000	27516	75	26058	172220;172221;172222;172223;172224;172225;172226;172227;172228;172229;172230;172231;172232;172233;172234;172235	233089;233090;233091;233092;233093;233094;233095;233096;233097;233098;233099;233100;233101;233102;233103;233104;233105;233106;233107;233108;233109;233110;233111;233112;233113;233114;233115;233116;233117;233118;233119;233120;233121;233122;233123;233124;233125;233126	233094			38	
KIEPFYK	2	Unmodified	923.51165	0.5116541	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	27.25	26.795	3	0.025146	22905	160511_QHF_FH_JSI11i_3	35.88	21.673			1.4162	1.4263	93.141	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.205	0.22975	NaN	1	1	Median	0.86921	0.78806	NaN	1	1	Median	1.4162	1.4263	NaN	1	1	Median	150310000	70168000	80141000	0	0	0	21372000	16156000	5215800	47403000	21665000	25738000	81534000	32346000	49188000	27517	2304	26059	172236;172237;172238	233127;233128;233129	233127			3	
KIEQDTDTK	2	Unmodified	1076.535	0.53496832	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							2	2	2	4	5.2723	5.0373	2;3	3.2684E-05	2804	160511_QHF_FH_JSI12i_3	101.46	42.678			1.0487	1.0072	48.694	10	3	Median	1.4868	1.2723	43.566	2	2	Median	1.1886	1.4071	20.016	2	1	Median	1.5795	1.5421	49.707	2	0	Median	0.65476	0.70534	32.893	4	0	Median	1207700000	582470000	625210000	263750000	109480000	154270000	243380000	114970000	128410000	227300000	78956000	148340000	473240000	279060000	194190000	27518	132	26060	172239;172240;172241;172242;172243;172244;172245;172246;172247;172248	233130;233131;233132;233133;233134;233135;233136;233137;233138;233139;233140;233141;233142	233140			13	
KIEQELTAAK	2	Unmodified	1129.6343	0.63428844	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	18.012	17.575	2;3	0.00099085	14846	160511_QHF_FH_JSI9i_2	87.298	59.285			0.52711	0.60226	59.195	6	6	Median	2.6976	2.274	NaN	1	1	Median	0.5308	0.66132	NaN	1	1	Median	0.65033	0.61299	NaN	1	1	Median	0.48835	0.49077	13.679	3	3	Median	933530000	545120000	388410000	75732000	25842000	49890000	103230000	60895000	42340000	144210000	77403000	66810000	610350000	380980000	229370000	27519	4708	26061	172249;172250;172251;172252;172253;172254	233143;233144;233145;233146;233147;233148;233149	233146			7	
KIESFGSK	2	Unmodified	894.48108	0.48108226	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	1	3	11.867	11.542	2;3	0.0018488	9101	160511_QHF_FH_JSI11i_3	66.621	43.193			1.3327	1.43	129.48	8	8	Median	2.8206	2.2184	NaN	1	1	Median	4.9824	5.6415	139.75	3	3	Plateau	0.14113	0.1362	NaN	1	1	Median	1.2695	1.2873	118.05	3	3	Median	8386800000	4223200000	4163600000	495990000	229910000	266080000	2120800000	982550000	1138300000	627980000	479180000	148800000	5142000000	2531600000	2610400000	27520	1348	26062	172255;172256;172257;172258;172259;172260;172261;172262	233150;233151;233152;233153;233154;233155;233156;233157	233150			8	
KIESFGSKSGR	2	Acetyl (K)	1236.6463	0.64625011	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS			16	0									2	1	1			27.07	18.913	3	0.0082831	11153	160513_QHF_FH_JSI10Kac_6	58.04	44.231			0.83881	0.83406	1.4657	2	0	Median	0.99511	0.82546	NaN	1	0	Median	0.70705	0.84275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25553000	14841000	10712000	6073700	3196900	2876800	19479000	11645000	7834900	0	0	0	0	0	0	27521	1348	26063	172263;172264	233158;233159;233160	233160	1286		3	
KIESFGSPK	2	Unmodified	991.53385	0.53384611	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	16.845	16.489	2;3	0.00014906	13048	160511_QHF_FH_JSI12i_3	77.379	65.332			1.022	1.0548	11.117	6	0	Median	1.4496	1.1965	NaN	1	0	Median	0.96614	1.1059	NaN	1	0	Median	1.005	0.94308	9.14	2	0	Median	1.069	1.0676	10.039	2	0	Median	1013000000	487500000	525530000	32845000	11838000	21007000	59973000	30582000	29391000	359640000	200790000	158850000	560580000	244290000	316280000	27522	1685	26064	172265;172266;172267;172268;172269;172270	233161;233162;233163;233164;233165;233166;233167;233168	233165			8	
KIETEVAGLK	2	Unmodified	1086.6285	0.62847478	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	28.257	28.212	2	0.00074575	23630	160511_QHF_FH_JSI12i_3	70.1	39.846			1.4645	1.4688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4645	1.4688	NaN	1	0	Median	62202000	27684000	34518000	0	0	0	0	0	0	0	0	0	62202000	27684000	34518000	27523	3970	26065	172271	233169;233170	233169			2	
KIEVIKPGDLGVDLTSK	3	Unmodified	1811.0404	0.040414837	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							3	2	3	3	66.646	66.088	2;3;4	5.1228E-06	56914	160511_QHF_FH_JSI12i_3	101.15	95.489			0.71887	0.75316	14.343	10	10	Median	0.95959	0.79857	5.7556	2	2	Median	0.64611	0.76687	4.0514	2	2	Median	0.70163	0.67142	11.721	3	3	Plateau	0.55489	0.55892	17.406	3	3	Plateau	4226900000	2535800000	1691000000	338200000	147860000	190350000	595460000	394690000	200770000	1561000000	891000000	669990000	1732200000	1102300000	629940000	27524	1473	26066	172272;172273;172274;172275;172276;172277;172278;172279;172280;172281;172282	233171;233172;233173;233174;233175;233176;233177;233178;233179;233180;233181;233182;233183;233184;233185;233186	233185			16	
KIEVPAQLK	2	Unmodified	1024.6281	0.62808085	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	36.709	36.355	2;3	0.011851	31706	160511_QHF_FH_JSI11i_3	43.282	22.978			1.0102	0.94417	19.126	5	2	Median	NaN	NaN	NaN	0	0	Median	0.68448	0.80363	NaN	1	0	Median	0.97665	0.92303	3.2026	2	1	Median	1.1916	1.2286	0.96911	2	1	Median	343020000	187480000	155540000	0	0	0	18509000	11597000	6911200	92467000	46910000	45558000	232040000	128970000	103070000	27525	3819	26067	172283;172284;172285;172286;172287	233187;233188;233189;233190	233187			4	
KIGDEYFTFITDCK	2	Unmodified	1735.8127	0.81272309	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	76.17	75.911	2;3	2.3082E-06	65859	160511_QHF_FH_JSI12i_3	139.78	116.55			0.901	1.0074	22.67	5	0	Median	NaN	NaN	NaN	0	0	Median	0.81382	1.0074	NaN	1	0	Median	0.89117	0.8246	5.4015	2	0	Median	1.247	1.2927	0.66859	2	0	Median	832420000	363920000	468500000	0	0	0	70072000	53264000	16808000	228950000	115330000	113620000	533400000	195320000	338070000	27526	1655	26068	172288;172289;172290;172291;172292	233191;233192;233193;233194;233195;233196;233197;233198;233199;233200	233199			10	
KIGDTPMVR	1	Unmodified	1015.5485	0.54845032	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		21.721	20.785	2;3	0.014848	16667	160511_QHF_FH_JSI9i_3	45.161	28.958			1.6315	1.5511	15.28	4	1	Median	1.6571	1.3585	11.692	2	1	Median	1.4999	1.7873	NaN	1	0	Median	1.7328	1.6305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	360440000	142280000	218150000	183220000	80021000	103200000	55113000	22785000	32328000	122100000	39479000	82624000	0	0	0	27527	957	26069	172293;172294;172295;172296	233201;233202	233201			2	
KIGEEEIQKPEEK	3	Unmodified	1555.8094	0.80935227	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	4	1	19.383	18.98	2;3;4	0.00015464	15836	160511_QHF_FH_JSI11i_3	87.083	51.879			0.79788	0.75402	61.801	9	8	Median	1.1686	0.9962	109.57	2	2	Median	0.8684	1.0815	93.232	2	2	Median	0.92371	0.87631	31.417	4	3	Median	0.40189	0.41611	NaN	1	1	Median	950790000	531750000	419050000	176030000	80621000	95407000	206890000	119390000	87498000	518240000	297950000	220290000	49640000	33788000	15852000	27528	2676	26070	172297;172298;172299;172300;172301;172302;172303;172304;172305	233203;233204;233205;233206;233207;233208;233209;233210;233211;233212	233204			10	
KIGGIFAFK	2	Unmodified	979.58549	0.58548775	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	56.552	55.48	2;3	0.0031125	48778	160511_QHF_FH_JSI11i_3	47.198	39.978			0.99214	0.95875	8.4588	6	0	Median	1.1559	0.95875	5.4757	2	0	Median	0.83261	0.96276	9.3444	2	0	Median	0.9333	0.85548	NaN	1	0	Median	1.0547	1.0649	NaN	1	0	Median	407520000	194190000	213330000	170050000	71116000	98933000	104410000	49696000	54714000	53231000	30062000	23169000	79834000	43319000	36515000	27529	1207	26071	172306;172307;172308;172309;172310;172311	233213;233214;233215;233216;233217;233218	233213			6	
KIGQQPQQPGAPPQQDYTK	2	Unmodified	2108.0651	0.065066458	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.67	4.64		2	3					1		2	2	2		28.188	25.784	3	1.7498E-05	21257	160511_QHF_FH_JSI10i_3	73.809	72.075			1.0171	0.93134	16.088	6	1	Median	1.1466	0.9486	5.0375	2	0	Median	0.74968	0.8829	9.9937	2	0	Median	1.1293	1.0858	26.977	2	1	Median	NaN	NaN	NaN	0	0	Median	345460000	167590000	177870000	136650000	61014000	75636000	132750000	67969000	64784000	76060000	38608000	37452000	0	0	0	27530	3911	26072	172312;172313;172314;172315;172316;172317	233219;233220;233221;233222;233223;233224;233225;233226;233227;233228;233229;233230;233231;233232;233233;233234;233235;233236	233224			18	
KIGVNQPK	2	Unmodified	882.5287	0.52870115	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	2	3	2	3	9.1464	7.5486	2;3	0.001385	6049	160511_QHF_FH_JSI10i_3	57.177	49.252			1.0986	1.1626	12.561	10	0	Median	1.4535	1.1445	8.8543	2	0	Median	1.0396	1.1981	18.38	3	0	Plateau	1.1891	1.123	17.116	2	0	Median	1.1848	1.1973	12.312	3	0	Plateau	9820500000	4772200000	5048300000	2973300000	1306200000	1667000000	2624200000	1328200000	1296000000	2406100000	1242000000	1164100000	1817000000	895740000	921220000	27531	2090	26073	172318;172319;172320;172321;172322;172323;172324;172325;172326;172327	233237;233238;233239;233240;233241;233242;233243;233244;233245;233246;233247;233248;233249;233250;233251	233242			15	
KIIEDQQESLNK	2	Unmodified	1443.7569	0.75692277	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	2.85		10	8					1		4	4	6	5	20.812	19.897	2;3	3.6036E-06	16989	160511_QHF_FH_JSI10i_2	121.02	85.51			1.0934	1.0645	70.161	18	18	Median	0.84364	0.70628	82.55	4	4	Median	0.81664	1.0064	65.427	4	4	Median	1.5965	1.494	77.953	5	5	Median	0.88263	0.96871	78.688	5	5	Median	1797300000	989500000	807850000	211580000	120250000	91329000	237340000	131040000	106300000	563500000	292770000	270740000	784920000	445440000	339480000	27532	840	26074	172328;172329;172330;172331;172332;172333;172334;172335;172336;172337;172338;172339;172340;172341;172342;172343;172344;172345;172346	233252;233253;233254;233255;233256;233257;233258;233259;233260;233261;233262;233263;233264;233265;233266;233267;233268;233269;233270;233271	233264			20	
KIIESIIEESQK	2	Unmodified	1415.7872	0.78716026	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			47.614	46.048	2	0.019039	37528	160511_QHF_FH_JSI9i_3	45.973	30.082			0.68805	0.80812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68805	0.80812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18525000	11349000	7175800	0	0	0	18525000	11349000	7175800	0	0	0	0	0	0	27533	2902	26075	172347;172348	233272;233273	233273			2	
KIIETPGIR	1	Unmodified	1025.6233	0.62332982	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.254	27.873	3	0.019316	22717	160511_QHF_FH_JSI9i_3	33.19	26.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27534	1544	26076	172349	233274	233274			1	
KIITYDLIK	2	Unmodified	1105.6747	0.67469669	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	51.258	51.023	3	0.00083958	43572	160511_QHF_FH_JSI12i_3	63.283	53.051			0.94209	0.92126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94209	0.92126	NaN	1	1	Median	45351000	22219000	23132000	0	0	0	0	0	0	0	0	0	45351000	22219000	23132000	27535	228	26077	172350;172351	233275;233276	233276			2	
KIIVDDDDSK	2	Unmodified	1146.5768	0.57683314	5151	Q9NZD8	SPG21	Maspardin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.428	14.502	2	0.0057778	11288	160511_QHF_FH_JSI12i_3	70.808	47.454			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12549000	0	12549000	0	0	0	0	0	0	0	0	0	12549000	0	12549000	27536	5151	26078	172352	233277;233278	233277			2	
KILATPPQEDAPSVDIANIR	1	Unmodified	2147.1586	0.15863249	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				67.56	66.07	3	0.025503	54179	160511_QHF_FH_JSI9i_3	27.523	18.24			0.67372	0.57056	NaN	1	1	Median	0.67372	0.57056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11500000	8485000	3014600	11500000	8485000	3014600	0	0	0	0	0	0	0	0	0	27537	1322	26079	172353;172354	233279;233280	233280			2	
KINEELESQYQQSMDSK	2	Unmodified	2055.9419	0.94189936	105	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	3	4	40.032	39.446	2;3	3.093E-12	34630	160511_QHF_FH_JSI11i_3	180.78	150.34			0.90851	0.9877	23.489	8	1	Median	1.2786	1.097	11.757	2	1	Median	0.84473	1.036	NaN	1	0	Median	1.0566	0.99828	33.195	3	0	Plateau	0.79374	0.84817	13.983	2	0	Median	1095400000	600880000	494480000	153330000	71551000	81774000	189900000	131060000	58834000	429780000	229320000	200460000	322360000	168950000	153410000	27538	105	26080	172355;172356;172357;172358;172359;172360;172361;172362;172363;172364	233281;233282;233283;233284;233285;233286;233287;233288;233289;233290;233291;233292;233293;233294	233285			14	
KINEELESQYQQSMDSK	2	Oxidation (M)	2071.9368	0.93681398	105	O00193	SMAP	Small acidic protein	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	30.346	30.282	3	7.8116E-06	25519	160511_QHF_FH_JSI12i_3	92.264	82.515			1.1526	1.1788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1526	1.1788	NaN	1	1	Median	15821000	3388300	12432000	0	0	0	0	0	0	0	0	0	15821000	3388300	12432000	27539	105	26080	172365;172366	233295;233296	233295		44	2	
KINELTGIK	2	Unmodified	1014.6073	0.6073454	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	25.595	25.321	2;3	0.0022368	20807	160511_QHF_FH_JSI12i_3	78.939	51.685			1.4526	1.3862	85.208	5	5	Median	NaN	NaN	NaN	0	0	Median	0.3946	0.47877	NaN	1	1	Median	1.9476	1.8185	38.389	2	2	Median	0.66204	0.6701	109.63	2	2	Median	1011300000	476050000	535280000	0	0	0	83192000	60052000	23140000	452340000	148870000	303470000	475810000	267130000	208670000	27540	1449	26081	172367;172368;172369;172370;172371	233297;233298;233299;233300;233301	233300			5	
KINLELR	1	Unmodified	884.54435	0.54435122	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		32.36	31.421	3	0.0020381	25694	160511_QHF_FH_JSI9i_3	79.116	21.835			1.1368	0.97402	6.7031	3	0	Median	1.2264	0.97402	NaN	1	0	Median	0.83856	0.93787	NaN	1	0	Median	1.1368	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	409600000	214610000	194990000	169400000	78561000	90838000	134700000	77518000	57177000	105510000	58532000	46975000	0	0	0	27541	4419	26082	172372;172373;172374	233302;233303;233304;233305;233306	233305			5	
KINPENSK	2	Unmodified	928.49779	0.49779495	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		2	8						2	5	2	2	3	5.1369	3.7571	2;3	0.00033865	2649	160511_QHF_FH_JSI11i_3	111.74	66.021			1.0667	0.97917	15.47	12	1	Median	1.1979	0.96073	14.47	5	1	Median	1.0295	1.1859	10.784	2	0	Median	0.9329	0.87809	13.002	2	0	Median	0.91299	0.9588	16.921	3	0	Plateau	14323000000	6869500000	7453100000	2780100000	1176400000	1603800000	3363100000	1605400000	1757800000	3662700000	1763200000	1899500000	4516600000	2324600000	2192100000	27542	5497	26083	172375;172376;172377;172378;172379;172380;172381;172382;172383;172384;172385;172386	233307;233308;233309;233310;233311;233312;233313;233314;233315;233316;233317;233318;233319;233320;233321;233322;233323;233324;233325;233326	233308			20	
KINPSEDVGSK	2	Unmodified	1172.6037	0.60371659	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	11.273	11.333	2	8.7999E-05	8556	160511_QHF_FH_JSI12i_3	103.34	81.878			0.84158	0.79028	89.634	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84158	0.79028	NaN	1	1	Median	1.1971	1.2096	121.9	2	2	Median	149990000	69672000	80318000	0	0	0	0	0	0	46204000	19639000	26565000	103790000	50033000	53752000	27543	3819	26084	172387;172388;172389	233327;233328;233329	233328			3	
KINPTESTSK	2	Unmodified	1103.5823	0.58225287	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	6.8178	6.6422	2;3	3.2636E-05	4155	160511_QHF_FH_JSI12i_3	96.342	58.793			0.95665	0.89006	36.646	5	1	Median	2.0739	1.651	NaN	1	0	Median	0.51813	0.59783	NaN	1	1	Median	0.95665	0.89006	NaN	1	0	Median	0.94908	0.95627	11.486	2	0	Median	483750000	266110000	217640000	49817000	15708000	34109000	71153000	42138000	29015000	100520000	54611000	45909000	262260000	153660000	108610000	27544	3668	26085	172390;172391;172392;172393;172394	233330;233331;233332;233333;233334;233335;233336;233337	233336			8	
KIPDPDSDDVSEVDAR	1	Unmodified	1756.8115	0.81153711	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		39.571	39.269	2	0.0117	35396	160511_QHF_FH_JSI11i_1	50.675	44.443			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27545	1737	26086	172395	233338	233338			1	
KIPDTVLEK	2	Unmodified	1041.607	0.60701105	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.61		5	7					2	2	4	4	5	3	36.596	33.619	2;3	0.00018774	29122	160511_QHF_FH_JSI11i_3	66.595	39.114			1.0595	1.0309	39.019	16	5	Median	1.2663	1.053	66.493	4	3	Median	0.85158	0.98861	9.7591	4	1	Median	1.2503	1.2519	18.61	5	0	Median	0.67377	0.74968	16.441	3	1	Median	6915500000	3689000000	3226500000	328620000	171390000	157230000	1087500000	620330000	467180000	2325200000	1172800000	1152300000	3174200000	1724400000	1449800000	27546	2094	26087	172396;172397;172398;172399;172400;172401;172402;172403;172404;172405;172406;172407;172408;172409;172410;172411	233339;233340;233341;233342;233343;233344;233345;233346;233347;233348;233349;233350;233351;233352;233353;233354;233355;233356;233357;233358;233359;233360;233361;233362	233342			24	
KIPGIYVLSLEIGK	2	Unmodified	1528.9229	0.92286588	1719	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	4	2	1	1	91.287	89.155	2;3	0.0018964	77107	160511_QHF_FH_JSI10i_3	52.265	47.464			0.76235	0.74224	16.868	5	5	Median	0.71575	0.60548	17.699	2	2	Median	0.65333	0.74224	NaN	1	1	Median	0.86712	0.81954	NaN	1	1	Median	0.76235	0.78239	NaN	1	1	Median	210030000	125110000	84928000	85912000	58750000	27162000	23418000	13554000	9863400	25593000	10886000	14707000	75112000	41917000	33196000	27547	1719	26088	172412;172413;172414;172415;172416;172417;172418;172419	233363;233364;233365;233366;233367;233368;233369;233370	233365			8	
KIPLVPENLLK	2	Unmodified	1262.7962	0.79620881	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	74.251	73.188	3	0.0042618	61326	160511_QHF_FH_JSI10i_3	49.5	45.968			0.83168	0.79128	13.627	3	3	Median	0.95432	0.79128	NaN	1	1	Median	0.57736	0.67506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83168	0.88538	NaN	1	1	Median	83503000	46604000	36899000	17330000	8413600	8916500	17861000	11166000	6694800	0	0	0	48312000	27024000	21287000	27548	3037	26089	172420;172421;172422;172423;172424	233371;233372;233373;233374;233375	233372			5	
KIPNPDFFEDLEPFR	1	Unmodified	1862.9203	0.9202997	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.04	1.15		8	124						1	43	46	39	5	108.12	107.9	2;3	3.2761E-16	89836	160511_QHF_FH_JSI11i_3	119.69	103.8			1.0003	0.90409	19.091	98	21	Median	1.0527	0.89194	14.216	33	4	Median	0.68941	0.79744	14.743	32	5	Median	1.0465	0.98643	18.232	30	10	Median	1.0951	1.1208	26.974	3	2	Plateau	2784100000	1411000000	1373100000	544160000	265510000	278650000	609860000	354470000	255390000	1448900000	685090000	763850000	181120000	105920000	75203000	27549	1299	26090	172425;172426;172427;172428;172429;172430;172431;172432;172433;172434;172435;172436;172437;172438;172439;172440;172441;172442;172443;172444;172445;172446;172447;172448;172449;172450;172451;172452;172453;172454;172455;172456;172457;172458;172459;172460;172461;172462;172463;172464;172465;172466;172467;172468;172469;172470;172471;172472;172473;172474;172475;172476;172477;172478;172479;172480;172481;172482;172483;172484;172485;172486;172487;172488;172489;172490;172491;172492;172493;172494;172495;172496;172497;172498;172499;172500;172501;172502;172503;172504;172505;172506;172507;172508;172509;172510;172511;172512;172513;172514;172515;172516;172517;172518;172519;172520;172521;172522;172523;172524;172525;172526;172527;172528;172529;172530;172531;172532;172533;172534;172535;172536;172537;172538;172539;172540;172541;172542;172543;172544;172545;172546;172547;172548;172549;172550;172551;172552;172553;172554;172555;172556;172557	233376;233377;233378;233379;233380;233381;233382;233383;233384;233385;233386;233387;233388;233389;233390;233391;233392;233393;233394;233395;233396;233397;233398;233399;233400;233401;233402;233403;233404;233405;233406;233407;233408;233409;233410;233411;233412;233413;233414;233415;233416;233417;233418;233419;233420;233421;233422;233423;233424;233425;233426;233427;233428;233429;233430;233431;233432;233433;233434;233435;233436;233437;233438;233439;233440;233441;233442;233443;233444;233445;233446;233447;233448;233449;233450;233451;233452;233453;233454;233455;233456;233457;233458;233459;233460;233461;233462;233463;233464;233465;233466;233467;233468;233469;233470;233471;233472;233473;233474;233475;233476;233477;233478;233479;233480;233481;233482;233483;233484;233485;233486;233487;233488;233489;233490;233491;233492;233493;233494;233495;233496;233497;233498;233499;233500;233501;233502;233503;233504;233505;233506;233507;233508;233509;233510;233511;233512;233513;233514;233515;233516;233517;233518;233519;233520;233521;233522;233523;233524;233525;233526;233527;233528;233529;233530;233531;233532;233533;233534;233535;233536;233537;233538;233539;233540;233541;233542;233543;233544	233432			165	
KIPQELNNITK	2	Unmodified	1296.7402	0.74015049	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	39.014	38.397	2;3	0.0088711	33652	160511_QHF_FH_JSI11i_3	41.383	29.324			0.81973	0.90179	11.915	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76676	0.90179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91234	0.92302	16.744	2	0	Median	179270000	96568000	82707000	0	0	0	19364000	10149000	9214900	0	0	0	159910000	86419000	73492000	27550	5220	26091	172558;172559;172560;172561	233545;233546;233547	233545			3	
KIPQQLESK	2	Unmodified	1069.6132	0.61315906	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	19.011	18.435	2;3	0.0032944	15133	160511_QHF_FH_JSI10i_3	46.334	39.361			1.1659	1.1602	13.429	8	1	Median	1.4086	1.1264	10.69	2	1	Median	1.0447	1.1891	7.2129	2	0	Median	1.2635	1.2068	1.8227	2	0	Median	0.89654	0.90242	2.1718	2	0	Median	1730300000	849100000	881220000	455560000	240840000	214720000	261040000	124790000	136250000	385840000	162510000	223330000	627880000	320970000	306920000	27551	454	26092	172562;172563;172564;172565;172566;172567;172568;172569	233548;233549;233550;233551;233552;233553;233554;233555;233556;233557	233551			10	
KIPSSFTSVDK	2	Unmodified	1207.6449	0.64485312	2963	Q5TAX3	ZCCHC11	Terminal uridylyltransferase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			36.688	35.23	3	0.02302	28673	160511_QHF_FH_JSI9i_3	34.685	22.069			1.0658	0.86795	51.872	2	2	Median	1.0658	0.86795	51.872	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46173000	25451000	20722000	46173000	25451000	20722000	0	0	0	0	0	0	0	0	0	27552	2963	26093	172570;172571;172572	233558;233559;233560	233559			3	
KIPVVFR	1	Unmodified	857.54871	0.54870831	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.236	40.716	3	0.010044	33975	160511_QHF_FH_JSI10i_3	44.692	28.538			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27553	979	26094	172573	233561	233561			1	
KIPYPTK	2	Unmodified	845.50109	0.50108942	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	19.249	18.591	2;3	0.023391	14962	160511_QHF_FH_JSI12i_3	31.304	26.947			0.92368	0.92519	17.767	7	0	Median	1.2507	1.0133	39.948	2	0	Median	0.84968	1.023	9.3581	2	0	Median	0.97736	0.90233	NaN	1	0	Median	0.91267	0.91738	1.1991	2	0	Median	787760000	359330000	428430000	214860000	86854000	128010000	175340000	86707000	88638000	90251000	42855000	47395000	307300000	142910000	164390000	27554	5141	26095	172574;172575;172576;172577;172578;172579;172580	233562;233563;233564;233565;233566;233567;233568;233569;233570	233568			9	
KIQALQK	2	Unmodified	827.52289	0.52288749	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			10.776	10.104	2	0.023484	7725	160511_QHF_FH_JSI10i_3	73.039	20.356			0.37952	0.36497	25.579	2	2	Median	0.54182	0.43732	NaN	1	1	Median	0.26583	0.30458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165590000	112120000	53477000	91726000	54055000	37671000	73868000	58061000	15807000	0	0	0	0	0	0	27555	2727	26096	172581;172582	233571;233572	233571			2	
KIQASTMAFK	2	Unmodified	1123.606	0.6059652	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.03			11						5	4	6	3	3	31.561	28.16	2;3	1.5374E-07	23094	160511_QHF_FH_JSI12i_3	119.68	89.11			0.87747	0.86977	118.45	16	9	Median	0.88896	0.72943	76.851	4	3	Median	1.146	1.3692	94.174	6	4	Median	0.85887	0.80753	142.93	3	1	Plateau	0.89647	0.89286	116.49	3	1	Median	9079400000	4179200000	4900200000	2314400000	1046100000	1268300000	2344800000	1096000000	1248800000	1773100000	810680000	962460000	2647000000	1226400000	1420700000	27556	1470	26097	172583;172584;172585;172586;172587;172588;172589;172590;172591;172592;172593;172594;172595;172596;172597;172598	233573;233574;233575;233576;233577;233578;233579;233580;233581;233582;233583;233584;233585;233586;233587;233588;233589;233590;233591;233592;233593;233594;233595;233596	233590			24	
KIQASTMAFK	2	Oxidation (M)	1139.6009	0.60087982	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			19.179	18.014	3	0.006005	14806	160511_QHF_FH_JSI10i_3	48.284	41.615			0.95595	0.91653	58.556	2	1	Median	1.7459	1.3866	NaN	1	0	Median	0.52343	0.60579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	794530000	389690000	404840000	443650000	185090000	258560000	350880000	204600000	146280000	0	0	0	0	0	0	27557	1470	26097	172599;172600	233597;233598;233599	233598		1139	3	
KIQLVMK	2	Unmodified	858.53609	0.53609472	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	28.205	28.183	3	0.03512	23534	160511_QHF_FH_JSI12i_3	31.955	21.082			0.76963	0.74255	22.033	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68366	0.63543	NaN	1	1	Median	0.86641	0.86774	NaN	1	1	Median	143940000	78127000	65811000	0	0	0	0	0	0	50944000	28543000	22402000	92994000	49585000	43410000	27558	723	26098	172601;172602	233600;233601	233601			2	
KIQNDAGVR	1	Unmodified	999.54614	0.54614213	3966;3911;4118	Q96AE4;Q92945;Q96I24	FUBP1;KHSRP;FUBP3	Far upstream element-binding protein 1;Far upstream element-binding protein 2;Far upstream element-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching		2.71	0.452		2	5							3	3	1		6.4152	6.0034	2;3	0.00011775	3964	160511_QHF_FH_JSI9i_3	65.404	41.249			1.0393	0.9228	43.398	7	0	Median	1.2055	0.94682	7.7162	3	0	Plateau	0.72868	0.83869	26.096	3	0	Median	0.3577	0.33413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2104200000	1074300000	1029900000	1030500000	448000000	582520000	1024100000	590470000	433640000	49526000	35787000	13740000	0	0	0	27559	3966;3911;4118	26099	172603;172604;172605;172606;172607;172608;172609	233602;233603;233604;233605;233606;233607;233608	233606			7	
KIQPLAK	2	Unmodified	796.51707	0.51707383	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.368	11.571	2	0.025441	8968	160511_QHF_FH_JSI9i_3	54.787	15.968			1.3268	1.079	NaN	1	0	Median	1.3268	1.079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110200000	52131000	58067000	110200000	52131000	58067000	0	0	0	0	0	0	0	0	0	27560	1205	26100	172610	233609	233609			1	
KIQSLGDSK	2	Unmodified	974.53966	0.53965977	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.9923	9.3491	3	0.005918	6936	160511_QHF_FH_JSI9i_3	41.399	25.262			1.5931	1.301	NaN	1	0	Median	1.5931	1.301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55907000	18819000	37088000	55907000	18819000	37088000	0	0	0	0	0	0	0	0	0	27561	1664	26101	172611	233610	233610			1	
KISELDAFLK	2	Unmodified	1162.6598	0.6597749	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							2	4	3	4	63.903	63.07	2;3	1.3312E-05	55509	160511_QHF_FH_JSI11i_3	90.05	65.196			0.90635	0.91795	34.479	13	3	Median	0.83354	0.68942	32.237	2	1	Median	0.78698	0.94074	42.726	4	1	Median	1.0398	0.99538	23.473	3	0	Plateau	0.75485	0.79472	30.37	4	1	Median	1789300000	982070000	807230000	42536000	24271000	18266000	200860000	116960000	83894000	586050000	282280000	303770000	959870000	558560000	401310000	27562	2244	26102	172612;172613;172614;172615;172616;172617;172618;172619;172620;172621;172622;172623;172624	233611;233612;233613;233614;233615;233616;233617;233618;233619;233620;233621;233622;233623;233624;233625;233626;233627;233628;233629	233611			19	
KISELDAFLK	2	Acetyl (K)	1204.6703	0.67033959	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.816	72.278	2	0.04837	38263	160513_QHF_FH_JSI11Kac_5	61.56	14.373			0.44404	0.43897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44404	0.43897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3727400	2405200	1322300	0	0	0	0	0	0	3727400	2405200	1322300	0	0	0	27563	2244	26102	172625	233630	233630			1	
KISGGSVVEMQGDEMTR	1	Unmodified	1822.8553	0.85533296	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		39.581	38.469	3	4.527E-08	33753	160511_QHF_FH_JSI11i_3	121.82	112.77			1.0325	0.95047	95.854	5	4	Median	7.7139	6.8159	127.74	3	3	Plateau	0.75939	0.87717	NaN	1	0	Median	1.0325	0.95047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	199360000	101640000	97723000	61233000	25826000	35407000	66131000	38915000	27216000	71996000	36896000	35100000	0	0	0	27564	576	26103	172626;172627;172628;172629;172630;172631	233631;233632;233633;233634;233635;233636	233631			6	
KISIPVDISDSDMMLNIINSSITTK	2	Unmodified	2734.4133	0.41326855	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.82	101.83	3	1.0855E-34	88544	160511_QHF_FH_JSI12i_3	172.2	169			0.7194	0.72764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7194	0.72764	NaN	1	0	Median	232810000	112570000	120250000	0	0	0	0	0	0	0	0	0	232810000	112570000	120250000	27565	1655	26104	172632	233637;233638	233638			2	
KISLEDIQAFEK	2	Unmodified	1419.7609	0.76094551	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	68.196	67.603	2;3	2.9587E-05	58558	160511_QHF_FH_JSI12i_3	113.24	84.543			0.78482	0.81262	38.15	6	2	Median	0.44074	0.36346	NaN	1	1	Median	0.65353	0.73385	NaN	1	0	Median	1.0628	0.99772	3.1417	2	0	Median	0.78482	0.78963	18.48	2	1	Median	824510000	447300000	377210000	41556000	23568000	17988000	106000000	68295000	37709000	322840000	144130000	178710000	354110000	211310000	142800000	27566	3814	26105	172633;172634;172635;172636;172637;172638	233639;233640;233641;233642;233643;233644;233645;233646;233647	233646			9	
KISSDLDGHPVPK	2	Unmodified	1391.7409	0.74087877	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	23.293	22.661	3	0.006201	18524	160511_QHF_FH_JSI12i_3	35.657	23.389			0.74428	0.81893	75.967	2	1	Median	NaN	NaN	NaN	0	0	Median	0.40657	0.47858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3625	1.4013	NaN	1	0	Median	81714000	39487000	42227000	0	0	0	16614000	12614000	3999600	0	0	0	65101000	26873000	38228000	27567	1322	26106	172639;172640	233648;233649;233650	233650			3	
KISSPTGSK	2	Unmodified	903.50255	0.50254598	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	6.0017	5.836	2;3	0.0088369	3522	160511_QHF_FH_JSI12i_3	32.218	18.84			1.013	1.0153	22.264	5	0	Median	1.2723	1.0153	NaN	1	0	Median	0.5473	0.62866	NaN	1	0	Median	0.91576	0.8759	NaN	1	0	Median	1.0307	1.0612	2.8039	2	0	Median	1316200000	681880000	634350000	256770000	103570000	153210000	176920000	112150000	64776000	180870000	96940000	83928000	701670000	369230000	332430000	27568	4296	26107	172641;172642;172643;172644;172645	233651;233652;233653	233653			3	
KISTVVSSK	2	Unmodified	947.56515	0.56514624	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	11.887	11.406	2;3	0.011851	8906	160511_QHF_FH_JSI10i_3	43.282	29.929			0.50781	0.53271	77.38	6	6	Median	0.8455	0.69119	103.92	2	2	Median	0.91474	1.078	105.43	2	2	Median	0.60674	0.5548	NaN	1	1	Median	0.37939	0.37944	NaN	1	1	Median	655880000	372540000	283340000	258260000	132330000	125930000	145960000	82326000	63637000	92730000	53681000	39049000	158930000	104210000	54722000	27569	1466	26108	172646;172647;172648;172649;172650;172651	233654;233655;233656;233657;233658;233659	233655			6	
KITAASK	2	Unmodified	717.43849	0.43848916	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	2.6265	2.4953	2	0.027925	1064	160511_QHF_FH_JSI11i_3	64.265	14.138			0.089473	0.083472	56.158	3	2	Median	NaN	NaN	NaN	0	0	Median	0.16098	0.18526	NaN	1	0	Median	0.089473	0.083472	NaN	1	1	Median	0.062285	0.062678	NaN	1	1	Median	2587800000	2313300000	274450000	0	0	0	967350000	832670000	134670000	824290000	735750000	88540000	796140000	744900000	51234000	27570	1720	26109	172652;172653;172654	233660;233661;233662	233660			3	
KITDGLHALQEASNK	2	Unmodified	1623.858	0.8580338	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	2	4	2	40.652	40.097	2;3	7.3184E-07	35023	160511_QHF_FH_JSI11i_3	132.86	107.42			0.77128	0.81492	30.648	8	4	Median	1.0189	0.82653	NaN	1	0	Median	0.77128	0.89613	15.434	2	0	Median	0.82906	0.77116	40.518	4	4	Median	0.56805	0.5725	NaN	1	0	Median	1398400000	708390000	690040000	278600000	147580000	131020000	294210000	140030000	154180000	738460000	369550000	368910000	87158000	51230000	35928000	27571	679	26110	172655;172656;172657;172658;172659;172660;172661;172662;172663	233663;233664;233665;233666;233667;233668;233669;233670;233671;233672;233673;233674;233675;233676	233665			14	
KITDYGGDK	2	Unmodified	995.49238	0.49237523	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	9.1996	9.1013	2;3	0.00014326	6484	160511_QHF_FH_JSI12i_3	90.15	61.001			0.81621	0.80359	34.039	4	2	Median	NaN	NaN	NaN	0	0	Median	0.41804	0.49703	NaN	1	1	Median	0.809	0.75738	NaN	1	0	Median	0.95376	0.98053	19.768	2	1	Median	976930000	530780000	446150000	0	0	0	55460000	33555000	21905000	216180000	98693000	117490000	705290000	398540000	306750000	27572	552	26111	172664;172665;172666;172667	233677;233678;233679;233680;233681;233682	233681			6	
KITESVAETAQTIK	2	Unmodified	1517.8301	0.83008771	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	4	2	2	35.79	35.075	2;3	0.00010378	29609	160511_QHF_FH_JSI12i_3	94.717	74.621			0.90623	0.86306	48.168	10	7	Median	1.0481	0.91689	29.808	2	1	Median	0.76953	0.93354	53.918	4	4	Median	0.88203	0.83794	25.428	2	1	Median	0.55535	0.57018	88.321	2	1	Median	1015500000	642390000	373070000	73861000	39835000	34026000	214630000	133470000	81157000	312040000	186740000	125300000	414930000	282340000	132590000	27573	3961	26112	172668;172669;172670;172671;172672;172673;172674;172675;172676;172677	233683;233684;233685;233686;233687;233688;233689;233690;233691;233692;233693;233694	233694			12	
KITESVAETAQTIKK	3	Unmodified	1645.9251	0.92505073	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	31.248	30.535	3	0.00017341	25039	160511_QHF_FH_JSI9i_3	103.04	95.066			0.39627	0.41907	49.547	4	4	Median	0.35041	0.28936	NaN	1	1	Median	0.36224	0.42352	NaN	1	1	Median	0.4335	0.41467	NaN	1	1	Median	0.91501	0.93618	NaN	1	1	Median	999130000	612410000	386710000	323910000	193230000	130680000	290710000	197260000	93450000	317110000	182450000	134670000	67389000	39471000	27918000	27574	3961	26113	172678;172679;172680;172681	233695;233696;233697;233698;233699	233698			5	
KITGIEPLPGENK	2	Unmodified	1394.7769	0.77692993	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.32	40.124	3	0.0035417	34215	160511_QHF_FH_JSI12i_3	34.82	28.384			1.3545	1.3783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3545	1.3783	NaN	1	0	Median	63334000	29712000	33622000	0	0	0	0	0	0	0	0	0	63334000	29712000	33622000	27575	2902	26114	172682	233700	233700			1	
KITIADCGQLE	1	Unmodified	1246.6227	0.62273747	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.08	3	4	4				2	1		2	4	5	3	46.561	43.638	2	9.266E-05	37389	160511_QHF_FH_JSI11i_2	88.681	84.663			1.0028	1.0744	24.151	14	0	Median	1.2171	1.0039	7.5496	2	0	Median	0.91631	1.1141	4.7452	4	0	Linear	0.80867	0.82618	21.488	5	0	Median	1.4169	1.4719	9.3479	3	0	Plateau	11903000000	5684400000	6218500000	677350000	352680000	324680000	2195100000	1175900000	1019200000	4283200000	2099700000	2183500000	4747200000	2056200000	2691100000	27576	2040	26115	172683;172684;172685;172686;172687;172688;172689;172690;172691;172692;172693;172694;172695;172696	233701;233702;233703;233704;233705;233706;233707;233708;233709;233710;233711;233712;233713;233714;233715;233716;233717;233718;233719;233720;233721;233722;233723;233724;233725;233726;233727	233718			26	
KITIGQAPTEK	2	Unmodified	1184.6765	0.6764876	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				24.1	22.78	2;3	0.013994	18318	160511_QHF_FH_JSI9i_3	43.282	23.52			1.313	1.0687	7.1904	2	0	Median	1.313	1.0687	7.1904	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91885000	35149000	56735000	91885000	35149000	56735000	0	0	0	0	0	0	0	0	0	27577	1004	26116	172697;172698	233728;233729	233729			2	
KITNSLTVLCSEK	2	Unmodified	1491.7967	0.79667909	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			44.562	43.016	3	0.057877	35809	160511_QHF_FH_JSI10i_3	12.833	0			0.54781	0.61365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54781	0.61365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22234000	12671000	9562900	0	0	0	22234000	12671000	9562900	0	0	0	0	0	0	27578	571	26117	172699	233730	233730			1	
KITVVPSAK	2	Unmodified	941.59097	0.59096706	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			5							2		2	1	20.213	19.721	2;3	0.020169	15854	160511_QHF_FH_JSI9i_3	42.395	17.472			1.0899	0.91676	33.069	5	1	Median	1.2078	0.9843	10.053	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92296	0.86236	22.327	2	0	Median	0.47025	0.47107	NaN	1	1	Median	384430000	211000000	173430000	174510000	84046000	90465000	0	0	0	104690000	58784000	45910000	105230000	68174000	37053000	27579	4559	26118	172700;172701;172702;172703;172704	233731;233732;233733;233734;233735	233733			5	
KIYEDGDDDMK	2	Unmodified	1327.5602	0.56019679	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.221	15.284	2	0.0029695	12086	160511_QHF_FH_JSI12i_3	66.595	47.325			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27580	4837	26119	172705	233736	233736			1	
KIYPTIWWLFR	1	Unmodified	1521.8496	0.84964136	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		91.203	83.246	3	9.6576E-07	47971	160513_QHF_FH_JSI10Kac_6	104.52	75.452			0.72968	0.83488	34.367	3	0	Plateau	1.2303	1.0471	NaN	1	0	Median	0.69138	0.83488	NaN	1	0	Median	1.6829	1.6402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	401310000	233930000	167380000	98495000	43275000	55220000	270570000	178410000	92155000	32246000	12244000	20001000	0	0	0	27581	1000	26120	172706;172707;172708	233737;233738;233739;233740	233739			4	
KKDDDDEEIGGPK	3	Unmodified	1444.6682	0.66816734	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		8.0355	8.0355	2	0.0064999	5772	160511_QHF_FH_JSI11i_3	117.23	101.34			1.4397	1.3693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4397	1.3693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25195000	10727000	14468000	0	0	0	0	0	0	25195000	10727000	14468000	0	0	0	27582	4518	26121	172709	233741	233741			1	
KKDDETVDSLGPLEK	3	Unmodified	1672.8519	0.85194536	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	34.948	34.884	3	0.0020467	30296	160511_QHF_FH_JSI11i_3	58.577	52.161			0.74762	0.73045	35.872	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.022	0.94136	NaN	1	0	Median	0.54691	0.5668	NaN	1	1	Median	114970000	67428000	47542000	0	0	0	0	0	0	90534000	51969000	38565000	24436000	15459000	8977100	27583	5350	26122	172710;172711	233742;233743;233744	233743			3	
KKDDIPEEDK	3	Unmodified	1215.5983	0.59829686	2530	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		7.5848	7.5848	2	0.016727	5179	160511_QHF_FH_JSI11i_3	81.865	44.389			0.60092	0.55606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60092	0.55606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14311000	11125000	3185700	0	0	0	0	0	0	14311000	11125000	3185700	0	0	0	27584	2530	26123	172712;172713	233745;233746	233746			2	
KKDEELSSALEK	3	Unmodified	1375.7195	0.71947463	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		19.405	19.405	3	0.00045142	16279	160511_QHF_FH_JSI11i_3	82.515	62.053			0.51445	0.48074	33.356	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51445	0.48074	33.356	2	2	Median	NaN	NaN	NaN	0	0	Median	164970000	113570000	51400000	0	0	0	0	0	0	164970000	113570000	51400000	0	0	0	27585	4319	26124	172714;172715	233747;233748	233748			2	
KKDELER	2	Unmodified	916.49779	0.49779495	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.77	0.421		3	10							3	4	6		3.7307	3.4208	3	0.008687	929	160511_QHF_FH_JSI11i_3	66.692	32.439			1.4445	1.1921	135.49	11	5	Median	1.4445	1.1921	85.932	3	1	Median	0.25095	0.29388	163.27	4	1	Linear	1.3577	1.3052	168.19	4	3	Median	NaN	NaN	NaN	0	0	Median	9542800000	4982200000	4560600000	2545300000	1126100000	1419200000	4987700000	2957700000	2029900000	2009800000	898370000	1111500000	0	0	0	27586	1594	26125	172716;172717;172718;172719;172720;172721;172722;172723;172724;172725;172726;172727;172728	233749;233750;233751;233752;233753;233754;233755;233756;233757;233758;233759;233760;233761;233762	233753			14	
KKDLSLEEIQK	3	Acetyl (K)	1371.7609	0.76094551	1105;3925	P16949;Q93045	STMN1;STMN2	Stathmin;Stathmin-2	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	55.137	44.465	3	6.2826E-05	24452	160513_QHF_FH_JSI11Kac_5	98.105	48.604			0.68718	0.77871	49.936	6	1	Median	NaN	NaN	NaN	0	0	Median	0.83495	0.98815	2.7344	2	0	Median	0.50637	0.50713	87.518	2	1	Median	0.54757	0.61028	7.6005	2	0	Median	60467000	38248000	22219000	0	0	0	19760000	9548000	10212000	25078000	17905000	7172700	15629000	10795000	4833500	27587	1105;3925	26126	172729;172730;172731;172732;172733;172734	233763;233764;233765;233766;233767;233768	233766	958;960;961		6	
KKDPETYEVDSGTTK	3	Unmodified	1696.8156	0.81555986	2810	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			13.802	12.957	3	0.00017917	10360	160511_QHF_FH_JSI10i_3	84.508	77.779			0.87049	1.0109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87049	1.0109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37288000	21603000	15685000	0	0	0	37288000	21603000	15685000	0	0	0	0	0	0	27588	2810	26127	172735	233769	233769			1	
KKEDYVPALK	3	Unmodified	1189.6707	0.67067394	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	2		By MS/MS		By MS/MS	3	0			2								1		1	23.8	23.153	3	0.00058573	18798	160511_QHF_FH_JSI12i_3	79.659	55.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27589	3117	26128	172736;172737	233770;233771	233771			2	
KKEEEDDDMK	3	Unmodified	1265.5445	0.54454673	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	2	By matching	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	2	1	1	4.7256	4.4637	2;3	0.0032799	2375	160511_QHF_FH_JSI10i_2	58.674	39.431			0.91353	1.1244	26.319	5	0	Median	1.1068	0.93611	NaN	1	0	Median	0.91334	1.127	0.33514	2	0	Median	1.2468	1.2452	NaN	1	0	Median	0.63146	0.64191	NaN	1	0	Median	500350000	270530000	229810000	90346000	42378000	47968000	255600000	145660000	109940000	45983000	19676000	26307000	108420000	62819000	45600000	27590	4708	26129	172738;172739;172740;172741;172742	233772;233773;233774;233775	233772			4	
KKEEFQK	3	Unmodified	935.50763	0.50763136	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	2	By MS/MS			By MS/MS	3	0			2							1			1	4.8823	4.6788	3	0.016571	2262	160511_QHF_FH_JSI12i_3	67.981	39.874			0.92186	0.82336	28.639	2	1	Median	0.83997	0.67242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0117	1.0082	NaN	1	0	Median	1123900000	566380000	557500000	238750000	137090000	101670000	0	0	0	0	0	0	885120000	429300000	455830000	27591	1648	26130	172743;172744	233776;233777	233777			2	
KKEEGVIDSSDK	3	Unmodified	1333.6725	0.67252444	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							1	3	2		7.5411	7.209	2;3	0.0014812	4758	160511_QHF_FH_JSI11i_3	58.268	35.351			0.93889	1.0282	14.22	6	0	Median	0.93493	0.81891	NaN	1	0	Median	0.88842	1.0141	12.585	3	0	Median	1.1736	1.1086	8.6901	2	0	Median	NaN	NaN	NaN	0	0	Median	699480000	330690000	368800000	45796000	18138000	27658000	251780000	152590000	99190000	401910000	159960000	241950000	0	0	0	27592	1839	26131	172745;172746;172747;172748;172749;172750	233778;233779;233780;233781	233779			3	
KKEELLK	3	Unmodified	886.54877	0.54876789	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	7.5229	7.2618	3	0.010972	5184	160511_QHF_FH_JSI10i_3	65.252	17.404			0.3046	0.31653	15.707	4	4	Median	0.49675	0.39789	NaN	1	1	Median	0.27083	0.31114	NaN	1	1	Median	0.28687	0.27232	NaN	1	1	Median	0.32342	0.32201	NaN	1	1	Median	14312000000	8204900000	6107500000	909730000	557980000	351750000	1794400000	1285400000	509030000	3489800000	1980200000	1509600000	8118500000	4381300000	3737200000	27593	1546	26132	172751;172752;172753;172754	233782;233783;233784;233785;233786;233787;233788	233784			7	
KKEELYLQR	2	Unmodified	1205.6768	0.67682195	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				17.571	16.457	3	0.025953	13177	160511_QHF_FH_JSI9i_3	41.704	32.272			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27594	4989	26133	172755	233789	233789			1	
KKEEMLK	3	Unmodified	904.50519	0.50518852	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	5.5753	5.4417	3	0.0064963	2979	160511_QHF_FH_JSI12i_3	85.212	19.96			1.5344	1.444	25.499	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2244	1.4127	NaN	1	0	Median	1.5344	1.444	NaN	1	0	Median	2.2276	2.2204	NaN	1	1	Median	4308000000	1720700000	2587300000	0	0	0	1003100000	515470000	487630000	1806300000	627950000	1178300000	1498600000	577240000	921410000	27595	1444	26134	172756;172757;172758	233790;233791;233792;233793	233793			4	
KKEEPSQNDISPK	3	Unmodified	1498.7627	0.76273643	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							1	3	2		9.5493	9.184	2;3	4.7466E-15	6701	160511_QHF_FH_JSI11i_3	128.95	117.26			0.78758	0.88149	13.107	6	0	Median	1.2364	1.0503	NaN	1	0	Median	0.75049	0.87593	8.5026	3	0	Median	0.92015	0.87635	18.312	2	0	Median	NaN	NaN	NaN	0	0	Median	901680000	450020000	451660000	116240000	47120000	69125000	322010000	183460000	138550000	463420000	219440000	243980000	0	0	0	27596	4940	26135	172759;172760;172761;172762;172763;172764	233794;233795;233796;233797;233798;233799;233800;233801	233796			7	
KKEESTAASETTEGSQGDSKNAKK	5	2 Acetyl (K)	2594.2307	0.2307474	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	4				By MS/MS	14	0							1						1	17.966	10.412	4	0.02179	7391	160513_QHF_FH_JSI12Kac_4	31.473	20.484			1.0921	1.1814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0921	1.1814	NaN	1	0	Median	7432200	3646300	3785900	0	0	0	0	0	0	0	0	0	7432200	3646300	3785900	27597	3886	26136	172765	233802	233802	2974;2975;2976		1	
KKEEVPEFTK	3	Unmodified	1233.6605	0.66050319	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	18.557	18.19	3	0.0035546	14587	160511_QHF_FH_JSI12i_3	50.354	41.35			1.096	1.1075	16.182	3	1	Median	NaN	NaN	NaN	0	0	Median	1.146	1.3317	NaN	1	0	Median	1.0036	0.96452	NaN	1	1	Median	1.096	1.1075	NaN	1	0	Median	816120000	403770000	412350000	0	0	0	122840000	49457000	73381000	461140000	233160000	227970000	232150000	121150000	110990000	27598	1100	26137	172766;172767;172768	233803;233804;233805;233806;233807	233806			5	
KKEGETVEPYK	3	Unmodified	1306.6769	0.67688153	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		8.5691	8.5691	3	0.0010986	6202	160511_QHF_FH_JSI11i_3	57.802	36.945			1.41	1.3308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.41	1.3308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84711000	46324000	38386000	0	0	0	0	0	0	84711000	46324000	38386000	0	0	0	27599	2265	26138	172769	233808	233808			1	
KKEPEPNFQLLDNPAR	2	Unmodified	1894.9901	0.9901106	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			7							5	2			50.026	48.434	3;4	1.5902E-05	39534	160511_QHF_FH_JSI9i_3	123.02	118.85			0.99398	0.81874	27.636	6	1	Median	0.99398	0.81874	16.011	4	1	Median	0.77519	0.90163	54.067	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	287960000	155250000	132710000	220220000	116030000	104200000	67740000	39224000	28516000	0	0	0	0	0	0	27600	4272	26139	172770;172771;172772;172773;172774;172775;172776	233809;233810;233811;233812;233813;233814;233815;233816;233817;233818;233819;233820	233813			12	
KKEPIEK	3	Unmodified	870.51747	0.51746776	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	4.6064	4.4481	3	0.0085812	2037	160511_QHF_FH_JSI12i_3	77.058	16.27			0.9595	0.91893	98.846	5	2	Median	1.1312	0.95078	NaN	1	0	Median	1.0917	1.1863	NaN	1	0	Median	0.9595	0.91893	NaN	1	0	Median	0.28698	0.29972	144.67	2	2	Median	16157000000	9129800000	7027300000	3135000000	1205300000	1929600000	3891500000	1759700000	2131800000	4987200000	2574000000	2413200000	4143400000	3590800000	552690000	27601	4940	26140	172777;172778;172779;172780;172781	233821;233822;233823;233824;233825;233826;233827;233828	233827			8	
KKEPSVEEK	3	Unmodified	1072.5764	0.57643921	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		5.0637	4.7382	3	0.0093384	2681	160511_QHF_FH_JSI9i_3	47.559	27.797			1.0264	0.97601	20.573	3	0	Median	1.5284	1.2221	NaN	1	0	Median	0.69221	0.81036	NaN	1	0	Median	1.0264	0.97601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	783820000	387960000	395860000	209180000	82456000	126720000	253380000	147060000	106320000	321270000	158450000	162830000	0	0	0	27602	3277	26141	172782;172783;172784	233829;233830;233831	233831			3	
KKESTNSMETR	2	Acetyl (K);Oxidation (M)	1367.6351	0.63509307	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	1	0	1	2			By MS/MS		15	0								1				1		5.0513	-4.481	3	0.0098236	1501	160513_QHF_FH_JSI11Kac_5	45.915	36.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27603	1961	26142	172785	233832	233832	1981;1982	1632	1	
KKHKERDLK	4	Unmodified	1180.704	0.70403976	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	4		By MS/MS			16	0									1		1			104.71	98.992	2	0.057703	58591	160513_QHF_FH_JSI10Kac_6	30.185	9.6648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105650000	105650000	0	0	0	0	105650000	105650000	0	0	0	0	0	0	0	27604	5542	26143	172786	233833	233833			1	
KKPATDGAKPK	4	Acetyl (K)	1181.6768	0.67682195	4630	Q9H0E3	SAP130	Histone deacetylase complex subunit SAP130	yes	yes	1	0	0	3		By MS/MS			16	0									2		2			7.7637	0.92726	3	0.021271	2770	160513_QHF_FH_JSI10Kac_6	47.991	21.979			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9892300	9892300	0	0	0	0	9892300	9892300	0	0	0	0	0	0	0	27605	4630	26144	172787;172788	233834;233835	233834	3203		2	
KKPDYLPYAEDESVDDLAQQK	3	Unmodified	2451.1805	0.18054973	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			58.775	57.24	3	0.026429	47911	160511_QHF_FH_JSI10i_3	35.834	27.546			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27606	318	26145	172789	233836	233836			1	
KKPFMLDEEGDTQTEETQPSETK	3	Unmodified	2667.2222	0.22215654	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			10							4	3	3		38.786	37.74	3;4	4.22E-11	32719	160511_QHF_FH_JSI11i_3	110.67	104.5			1.0493	0.89113	31.774	10	7	Median	1.084	0.89113	7.8234	4	3	Median	1.04	1.2192	55.499	3	2	Median	0.87184	0.81127	35.441	3	2	Median	NaN	NaN	NaN	0	0	Median	502290000	246730000	255560000	237600000	108540000	129060000	71338000	39127000	32211000	193360000	99065000	94291000	0	0	0	27607	1169	26146	172790;172791;172792;172793;172794;172795;172796;172797;172798;172799	233837;233838;233839;233840;233841;233842;233843;233844;233845;233846;233847;233848;233849;233850;233851;233852;233853	233837			17	
KKPFMLDEEGDTQTEETQPSETK	3	Oxidation (M)	2683.2171	0.21707117	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	1	2	By MS/MS				3	0			2							2				33.744	32.313	4	0.0030919	26429	160511_QHF_FH_JSI9i_3	38.67	31.224			1.0765	0.89384	67.483	2	2	Median	1.0765	0.89384	67.483	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33506000	16709000	16796000	33506000	16709000	16796000	0	0	0	0	0	0	0	0	0	27608	1169	26146	172800;172801	233854;233855;233856	233855		793	3	
KKPGDASSLPDAGLSPGSQVDSK	3	Unmodified	2240.1285	0.12845458	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		37.894	37.157	3	1.8999E-07	32416	160511_QHF_FH_JSI11i_3	77.045	69.685			0.38019	0.40068	4.7229	2	1	Median	NaN	NaN	NaN	0	0	Median	0.33123	0.38752	NaN	1	1	Median	0.43639	0.41429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60124000	41516000	18609000	0	0	0	18360000	11065000	7295400	41764000	30451000	11313000	0	0	0	27609	2420	26147	172802;172803	233857;233858	233857			2	
KKPIVTINTNSISTK	3	Unmodified	1642.9618	0.96177059	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		35.883	34.435	3	6.6613E-08	29455	160511_QHF_FH_JSI11i_3	97.767	95.405			0.52759	0.51579	12.775	2	2	Median	0.5638	0.47124	NaN	1	1	Median	0.49371	0.56455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68773000	41869000	26904000	33586000	20056000	13530000	35187000	21812000	13374000	0	0	0	0	0	0	27610	3004	26148	172804;172805;172806	233859;233860;233861	233859			3	
KKPLFITTDSSK	3	Unmodified	1363.7711	0.77111627	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	2	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	23.126	22.682	3	0.010796	18675	160511_QHF_FH_JSI9i_3	52.495	46.836			1.1754	0.97862	35.387	3	3	Plateau	1.1754	0.97862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93003	0.86331	NaN	1	1	Median	0.50524	0.50282	NaN	1	1	Median	263800000	134370000	129430000	104210000	49260000	54954000	0	0	0	99039000	44154000	54884000	60550000	40955000	19595000	27611	3239	26149	172807;172808;172809	233862;233863;233864	233863			3	
KKPLFITTDSSK	3	Acetyl (K)	1405.7817	0.78168095	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	1	0	0	2		By MS/MS	By matching	By matching	16	0									3		1	1	1	51.13	41.768	3	0.033912	23007	160513_QHF_FH_JSI10Kac_6	43.594	30.409			0.97153	1.1468	1.5211	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9574	1.1477	NaN	1	0	Median	1.1036	1.1134	NaN	1	0	Median	1.0529	1.1313	NaN	1	0	Median	17899000	8483700	9415500	0	0	0	7169400	3261400	3908000	4695200	2198100	2497100	6034600	3024300	3010300	27612	3239	26149	172810;172811;172812	233865	233865			1	
KKPNEDEVNQDSVK	3	Unmodified	1628.8006	0.8005785	3971	Q96AT1	KIAA1143	Uncharacterized protein KIAA1143	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		10.101	9.7841	3	0.0021933	7529	160511_QHF_FH_JSI10i_3	67.136	55.866			11.014	11.534	367.09	2	1	Median	NaN	NaN	NaN	0	0	Median	133.45	154.62	NaN	1	1	Median	0.90899	0.86037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1121700000	58779000	1062900000	0	0	0	1064500000	30091000	1034400000	57136000	28688000	28448000	0	0	0	27613	3971	26150	172813;172814	233866;233867	233867			1	
KKPPPAPEGK	3	Unmodified	1047.6077	0.60767975	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	3	1	5.0523	5.0523	2;3	0.0017695	2645	160511_QHF_FH_JSI12i_3	65.842	56.979			1.1069	1.0247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1069	1.0247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	779920000	312020000	467900000	0	0	0	0	0	0	779920000	312020000	467900000	0	0	0	27614	3132	26151	172815;172816;172817;172818;172819;172820	233868;233869;233870;233871;233872;233873	233873			6	
KKPPVATEGESALNFNLFEK	3	Unmodified	2218.1634	0.16338352	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	2	By MS/MS		By MS/MS		3	0			2							1		1		69.924	69.924	3	3.0026E-05	62257	160511_QHF_FH_JSI11i_3	76.492	62.477			1.1025	1.0262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1025	1.0262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46721000	27190000	19532000	0	0	0	0	0	0	46721000	27190000	19532000	0	0	0	27615	3267	26152	172821;172822	233874;233875;233876	233875			3	
KKPSLDDLK	3	Unmodified	1042.6023	0.60226003	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	20.497	20.498	3	0.01931	16746	160511_QHF_FH_JSI12i_3	48.981	28.461			0.45296	0.4572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45296	0.4572	NaN	1	1	Median	80096000	50448000	29648000	0	0	0	0	0	0	0	0	0	80096000	50448000	29648000	27616	2884	26153	172823	233877	233877			1	
KKPTPIQLNPAPDGSAVNGTSSAETNLEALQK	3	Unmodified	3275.6997	0.69974882	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.637	62.635	4	1.6002E-17	55469	160511_QHF_FH_JSI11i_3	94.73	92.646			0.79765	0.74251	7.4598	3	0	Plateau	0.80673	0.6585	NaN	1	0	Median	0.57397	0.66107	NaN	1	0	Median	0.79765	0.75075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	262210000	150340000	111870000	47353000	22659000	24694000	71571000	41533000	30038000	143290000	86152000	57137000	0	0	0	27617	2191	26154	172824;172825;172826	233878;233879;233880;233881;233882	233878			5	
KKPTPVLLPQSK	3	Unmodified	1334.8286	0.82857157	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	25.007	24.014	3	0.0025582	19478	160511_QHF_FH_JSI9i_3	58.487	55.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27618	5285	26155	172827;172828;172829;172830	233883;233884;233885;233886	233884			4	
KKPTVTK	3	Unmodified	800.51199	0.51198846	2687	Q15629	TRAM1	Translocating chain-associated membrane protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	2		2	4.2187	3.9229	3	0.016023	2102	160511_QHF_FH_JSI10i_3	54.157	24.781			1.0227	0.97658	93.346	3	3	Median	1.0227	0.97658	NaN	1	1	Median	1.301	1.3311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22092	0.23149	NaN	1	1	Median	18507000000	7838000000	10669000000	10121000000	3969800000	6151400000	7830000000	3446500000	4383600000	0	0	0	555540000	421770000	133770000	27619	2687	26156	172831;172832;172833;172834;172835	233887;233888;233889;233890;233891;233892	233888			6	
KKPVEVK	3	Unmodified	826.52764	0.52763852	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	5.0181	4.7971	3	0.019447	2386	160511_QHF_FH_JSI12i_3	50.607	24.87			0.65629	0.58127	26.833	4	4	Median	0.66866	0.52689	NaN	1	1	Median	0.32302	0.36625	NaN	1	1	Median	0.68251	0.64125	NaN	1	1	Median	0.64414	0.65246	NaN	1	1	Median	3902100000	2146100000	1756000000	1019700000	575480000	444230000	771170000	473850000	297320000	1043600000	524200000	519370000	1067600000	572570000	495020000	27620	2277	26157	172836;172837;172838;172839;172840	233893;233894;233895;233896;233897	233897			5	
KKPYIQLK	3	Unmodified	1016.6383	0.6382516	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				20.166	18.928	3	0.010677	15063	160511_QHF_FH_JSI9i_3	52.716	32.196			0.97623	0.77629	NaN	1	1	Median	0.97623	0.77629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51722000	25053000	26669000	51722000	25053000	26669000	0	0	0	0	0	0	0	0	0	27621	5626	26158	172841;172842	233898;233899	233899			2	
KKTELAQK	3	Unmodified	944.56548	0.56548059	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							1	2			4.5893	4.1011	3	0.01703	2069	160511_QHF_FH_JSI9i_3	54.539	21.162			0.67718	0.63943	25.06	2	2	Median	0.96636	0.7634	NaN	1	1	Median	0.47454	0.53559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	926840000	573320000	353530000	470250000	246200000	224050000	456600000	327110000	129480000	0	0	0	0	0	0	27622	1813	26159	172843;172844;172845	233900;233901;233902	233902			3	
KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	1	Unmodified	3517.7122	0.71224454	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	1		By MS/MS			16	0									1		1			93.569	87.848	4	0.05337	50417	160513_QHF_FH_JSI10Kac_6	14.746	5.3653			0.21144	0.24502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.21144	0.24502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60931000	50151000	10780000	0	0	0	60931000	50151000	10780000	0	0	0	0	0	0	27623	2073;4359	26160	172846	233903	233903			0	
KLADSDQASK	2	Unmodified	1061.5353	0.53530267	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.247	5.2948	2	0.00019132	2854	160511_QHF_FH_JSI12i_3	82.261	59.189			0.79879	0.76376	13.804	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75836	0.69273	NaN	1	0	Median	0.84136	0.84207	NaN	1	0	Median	193170000	100420000	92751000	0	0	0	0	0	0	70637000	36038000	34598000	122540000	64384000	58153000	27624	2587	26161	172847;172848	233904;233905;233906	233905			3	
KLAEENPDLQEAYIAK	2	Unmodified	1830.9363	0.9363437	3689	Q8TB36	GDAP1	Ganglioside-induced differentiation-associated protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	48.193	47.593	3	2.2947E-05	40674	160511_QHF_FH_JSI12i_3	78.069	70.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27625	3689	26162	172849;172850	233907;233908	233908			2	
KLAEEQQK	2	Unmodified	972.52401	0.52400971	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	1.75	0.829	2	1	1							1	1		2	4.8288	4.6083	2	0.0081146	2531	160511_QHF_FH_JSI12i_3	57.859	20.3			0.86137	0.92694	4.5945	4	0	Median	1.0356	0.93312	NaN	1	0	Median	0.81405	0.9696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86137	0.89397	4.1828	2	0	Median	365960000	202850000	163120000	47893000	22138000	25755000	75773000	41110000	34663000	0	0	0	242300000	139600000	102700000	27626	1117	26163	172851;172852;172853;172854	233909	233909			1	
KLAEQFPR	1	Acetyl (K)	1029.5607	0.56072956	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		45.605	35.374	2	0.0031792	21210	160513_QHF_FH_JSI11Kac_4	114.89	67.813			0.33408	0.32753	85.793	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1794	1.3946	NaN	1	0	Median	0.3219	0.31597	5.0787	2	0	Median	NaN	NaN	NaN	0	0	Median	30795000	22073000	8721800	0	0	0	2316500	885520	1430900	28479000	21188000	7290900	0	0	0	27627	4146	26164	172855;172856;172857	233910	233910	3051		1	
KLAPEYEK	2	Unmodified	976.52295	0.52294707	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	1	2	4	2	13.67	12.397	2;3	0.0036574	10133	160511_QHF_FH_JSI11i_3	76.827	34.718			0.75933	0.6896	25.05	9	0	Median	0.81267	0.6896	NaN	1	0	Median	0.55636	0.66039	2.5904	2	0	Median	0.80995	0.81581	17.557	4	0	Median	0.55262	0.56907	45.451	2	0	Median	2851000000	1652900000	1198100000	165130000	82543000	82586000	234050000	132000000	102050000	742870000	411150000	331720000	1708900000	1027200000	681760000	27628	1034	26165	172858;172859;172860;172861;172862;172863;172864;172865;172866	233911;233912;233913;233914;233915;233916;233917;233918;233919;233920;233921	233912			11	
KLAPEYEKAAK	3	Acetyl (K)	1288.7027	0.70270235	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	1	0	0	2			By MS/MS		15.5	0.5								1	1			2		32.694	23.199	3	0.024165	13939	160513_QHF_FH_JSI11Kac_5	59.57	37.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4540200	4540200	0	0	0	0	0	0	0	4540200	4540200	0	0	0	0	27629	1034	26166	172867;172868	233922;233923	233923	863		2	
KLAQQYYLVYQEPIPTAQLVQR	1	Acetyl (K)	2690.4432	0.44318719	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	86.947	77.564	3	3.0755E-12	43154	160513_QHF_FH_JSI11Kac_6	112.58	101.89			0.93622	0.92615	29.929	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80019	0.7495	NaN	1	0	Median	1.0954	1.1444	NaN	1	0	Median	96422000	54802000	41620000	0	0	0	0	0	0	63029000	37637000	25392000	33393000	17165000	16228000	27630	1265	26167	172869;172870	233924	233924	1163		1	
KLAVAIK	2	Unmodified	741.51126	0.51126017	5081	Q9NWZ3	IRAK4	Interleukin-1 receptor-associated kinase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			24.259	22.971	2	0.040725	18615	160511_QHF_FH_JSI9i_3	59.641	20.423			0.18723	0.1773	90.219	2	2	Median	0.11846	0.093681	NaN	1	1	Median	0.29592	0.33555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1181100000	850730000	330410000	464780000	397790000	66987000	716350000	452940000	263420000	0	0	0	0	0	0	27631	5081	26168	172871;172872	233925;233926	233926			2	
KLAVGDNNSK	2	Unmodified	1044.5564	0.55637247	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	7.7463	7.5198	2;3	0.00080349	5271	160511_QHF_FH_JSI11i_3	61.815	49.288			0.44695	0.48216	19.668	2	2	Median	NaN	NaN	NaN	0	0	Median	0.36352	0.41956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54952	0.5541	NaN	1	1	Median	87749000	60163000	27586000	0	0	0	45846000	33904000	11942000	0	0	0	41904000	26260000	15644000	27632	1600	26169	172873;172874;172875	233927;233928;233929	233927			3	
KLAVNMVPFPR	1	Acetyl (K);Oxidation (M)	1328.7275	0.72747731	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	1	0	1	1		By matching	By MS/MS	By MS/MS	15	0								3			1	1	1	74.811	64.214	2	0.020343	31763	160513_QHF_FH_JSI12Kac_5	57.96	35.874			0.60896	0.65826	89.013	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0515	1.2352	NaN	1	0	Median	0.35267	0.35079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11792000	8106300	3685500	0	0	0	2913400	1366100	1547300	8878400	6740200	2138200	0	0	0	27633	872;2075;2477;2824;811;4440;2430	26170	172876;172877;172878	233930;233931	233931	444	326;1951	2	
KLAVNMVPFPR	1	Acetyl (K)	1312.7326	0.73256269	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.3	0.471								2	1		1	1	1	81.83	71.914	2	5.5265E-11	38069	160513_QHF_FH_JSI12Kac_6	136.57	89.675			1.0784	1.2467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0784	1.2467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48424000	46760000	1663500	0	0	0	3214000	1550400	1663500	0	0	0	45210000	45210000	0	27634	872;2075;2477;2824;811;4440;2430	26170	172879;172880;172881	233932;233933;233934	233934	444		3	
KLDAGNQLALIEELHK	2	Unmodified	1790.989	0.98904797	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	69.592	68.944	3;4	1.0049E-07	59538	160511_QHF_FH_JSI12i_3	127.75	98.741			0.70738	0.70294	30.044	8	8	Median	0.68511	0.57771	NaN	1	1	Median	0.73037	0.83498	23.505	3	3	Median	0.88918	0.84285	27.259	2	2	Median	0.51944	0.52598	19.438	2	2	Median	1237900000	625630000	612270000	50384000	30200000	20184000	233510000	115630000	117880000	490000000	214050000	275950000	464010000	265740000	198260000	27635	3860	26171	172882;172883;172884;172885;172886;172887;172888;172889	233935;233936;233937;233938;233939;233940;233941;233942;233943;233944;233945;233946	233944			12	
KLDALCNIHENIR	1	Unmodified	1594.825	0.82495953	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.43	40.91	3	0.015921	34114	160511_QHF_FH_JSI10i_3	40.278	20.954			0.69274	0.81569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69274	0.81569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15787000	10489000	5299000	0	0	0	15787000	10489000	5299000	0	0	0	0	0	0	27636	1805	26172	172890	233947	233947			1	
KLDALCNIHENIR	1	Acetyl (K)	1636.8355	0.83552421	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		60.867	51.153	2	0.034167	27736	160513_QHF_FH_JSI11Kac_6	56.205	28.724			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6182500	6182500	0	0	0	0	0	0	0	6182500	6182500	0	0	0	0	27637	1805	26172	172891	233948	233948			1	
KLDAQVQELHAK	2	Acetyl (K)	1420.7674	0.76742787	1437	P35580	MYH10	Myosin-10	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.634	33.417	3	0.020662	20099	160513_QHF_FH_JSI11Kac_4	43.03	31.238			0.1892	0.18545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1892	0.18545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1974600	1696400	278190	0	0	0	0	0	0	1974600	1696400	278190	0	0	0	27638	1437	26173	172892	233949	233949	1418		1	
KLDAQVQELHAK	2	Unmodified	1378.7569	0.75686319	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	23.035	23.026	3	0.054764	19066	160511_QHF_FH_JSI12i_3	34.611	28.313			1.0139	0.99346	18.612	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2481	1.1332	NaN	1	0	Median	0.82369	0.87095	NaN	1	0	Median	99284000	49729000	49556000	0	0	0	0	0	0	40556000	17853000	22703000	58728000	31876000	26852000	27639	1437	26173	172893;172894	233950	233950			0	
KLDDFVETGDIR	1	Unmodified	1406.7042	0.70415892	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	49.445	48.735	2;3	0.00010938	41952	160511_QHF_FH_JSI11i_2	88.441	58.187			0.8594	0.86039	28.666	11	2	Median	0.86994	0.73758	11.638	2	1	Median	0.66039	0.79631	1.236	2	0	Median	1.1551	1.4026	29.473	3	1	Plateau	1.0393	1.1029	28.299	4	0	Median	820100000	435510000	384590000	120940000	66799000	54143000	222660000	147150000	75502000	182450000	76531000	105920000	294050000	145020000	149030000	27640	2489	26174	172895;172896;172897;172898;172899;172900;172901;172902;172903;172904;172905	233951;233952;233953;233954;233955;233956;233957;233958;233959;233960;233961;233962;233963;233964;233965;233966	233959			16	
KLDDSYSEAVR	1	Unmodified	1281.6201	0.62009493	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		2	1	23.268	22.813	2	0.0063816	18932	160511_QHF_FH_JSI11i_2	58.37	39.59			1.0948	1.0295	39.734	3	2	Median	2.0512	1.7674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79599	0.81442	NaN	1	1	Median	1.0948	1.0295	NaN	1	0	Median	64248000	30188000	34060000	11871000	3623400	8247200	0	0	0	20917000	12596000	8320900	31460000	13968000	17492000	27641	3328	26175	172906;172907;172908;172909	233967;233968;233969;233970	233969			4	
KLDDTPSGAGKFPAGHSVIQLAR	2	Acetyl (K)	2406.2656	0.26555718	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	1	0	0	2		By MS/MS		By MS/MS	16	0									3		1		2	71.22	61.514	3;4	0.00038119	33768	160513_QHF_FH_JSI10Kac_6	73.036	52.031			0.69175	0.76088	3.7612	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69175	0.76088	3.7612	2	0	Median	26350000	15039000	11311000	0	0	0	0	0	0	0	0	0	26350000	15039000	11311000	27642	4851	26176	172910;172911;172912	233971;233972;233973	233973	3252		2	
KLDEAVAEAHLGK	2	Unmodified	1379.7409	0.74087877	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.78		13	16						5	7	8	11	8	33.356	31.5	2;3;4	1.6672E-05	27203	160511_QHF_FH_JSI11i_3	81.619	76.62			1.0571	1.0293	129.87	30	20	Median	1.7753	1.5305	70.29	7	4	Median	1.0408	1.1941	100.23	7	5	Median	0.88817	0.88037	167.04	9	4	Median	1.9386	2.119	163.79	7	7	Median	10684000000	5391700000	5292200000	858590000	310350000	548250000	1728200000	969310000	758910000	3465400000	1648900000	1816500000	4631600000	2463100000	2168500000	27643	1234	26177	172913;172914;172915;172916;172917;172918;172919;172920;172921;172922;172923;172924;172925;172926;172927;172928;172929;172930;172931;172932;172933;172934;172935;172936;172937;172938;172939;172940;172941;172942;172943;172944;172945;172946	233974;233975;233976;233977;233978;233979;233980;233981;233982;233983;233984;233985;233986;233987;233988;233989;233990;233991;233992;233993;233994;233995;233996;233997;233998;233999;234000;234001;234002;234003;234004;234005;234006;234007;234008;234009;234010;234011;234012;234013;234014;234015;234016	233974			41	
KLDEAVAEAHLGK	2	Acetyl (K)	1421.7514	0.75144346	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4			2	2	3	52.744	42.203	3	0.0015097	24663	160513_QHF_FH_JSI11Kac_4	73.022	55.655			0.55519	0.60386	96.814	5	1	Median	NaN	NaN	NaN	0	0	Median	0.90714	1.0721	18.838	2	0	Median	0.2979	0.29456	NaN	1	0	Median	0.23743	0.25936	119.52	2	1	Median	60472000	41085000	19386000	0	0	0	18732000	8820700	9911000	28404000	22859000	5545300	13335000	9405200	3930100	27644	1234	26177	172947;172948;172949;172950;172951;172952;172953	234017;234018;234019;234020;234021;234022;234023;234024;234025	234019	1111		9	
KLDELLGK	2	Unmodified	914.54368	0.54368251	4061	Q96EX1	SMIM12	Small integral membrane protein 12	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.566	33.455	2	0.0076289	28282	160511_QHF_FH_JSI12i_3	76.679	27.582			0.16648	0.17157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16648	0.17157	NaN	1	1	Median	50014000	43056000	6958700	0	0	0	0	0	0	0	0	0	50014000	43056000	6958700	27645	4061	26178	172954	234026	234026			1	
KLDELYGTWR	1	Unmodified	1279.6561	0.65608651	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.36		7	8						2	5	5	4	3	51.742	49.912	2;3	1.4623E-07	44311	160511_QHF_FH_JSI10i_2	120.06	98.102			0.94558	0.96462	30.049	16	0	Median	1.3077	1.091	39.615	4	0	Median	0.82885	0.92748	34.821	5	0	Median	1.004	0.94834	8.7623	4	0	Median	0.79606	0.79767	14.276	3	0	Median	7003700000	3186500000	3817200000	455480000	206910000	248570000	823590000	410810000	412780000	3314200000	1519300000	1794900000	2410400000	1049500000	1361000000	27646	1457	26179	172955;172956;172957;172958;172959;172960;172961;172962;172963;172964;172965;172966;172967;172968;172969;172970;172971	234027;234028;234029;234030;234031;234032;234033;234034;234035;234036;234037;234038;234039;234040;234041;234042;234043;234044;234045;234046;234047;234048;234049;234050;234051;234052;234053;234054;234055;234056;234057;234058;234059;234060;234061;234062;234063;234064	234054			36	
KLDELYGTWR	1	Acetyl (K)	1321.6667	0.6666512	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								2	2		1	2	1	72.3	62.21	2	2.0919E-05	33778	160513_QHF_FH_JSI11Kac_6	121.9	102.11			1.4865	0.64751	102.19	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4865	1.7669	NaN	1	0	Median	0.65562	0.64751	119.02	2	0	Median	NaN	NaN	NaN	0	0	Median	68896000	51001000	17895000	0	0	0	4555800	2475900	2079900	60200000	44385000	15815000	4140200	4140200	0	27647	1457	26179	172972;172973;172974;172975	234065;234066;234067	234065	1438		3	
KLDELYGTWRK	2	Unmodified	1407.751	0.75104953	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	3	1		45.202	43.888	3;4	7.8205E-06	36240	160511_QHF_FH_JSI9i_3	110.31	94.934			0.97217	0.9191	20.946	6	0	Median	1.2131	1.0056	10.455	2	0	Median	0.61895	0.72434	26.917	3	0	Median	0.97742	0.90447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	873960000	454280000	419680000	169570000	78400000	91173000	366590000	224980000	141610000	337790000	150900000	186890000	0	0	0	27648	1457	26180	172976;172977;172978;172979;172980;172981	234068;234069;234070;234071;234072;234073;234074;234075;234076;234077	234077			10	
KLDEQYQK	2	Unmodified	1050.5346	0.53457439	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							1	2	6	5	9.2785	9.0553	2;3	0.0015035	6895	160511_QHF_FH_JSI9i_2	88.948	37.094			1.1223	1.1552	68.916	14	10	Median	1.2726	1.0885	NaN	1	0	Median	0.78379	0.96594	33.708	2	1	Median	1.213	1.2387	88.334	6	5	Median	1.3037	1.3406	70.404	5	4	Median	2369400000	1168900000	1200500000	111580000	48861000	62718000	310880000	148290000	162590000	796680000	369960000	426720000	1150300000	601790000	548470000	27649	1961	26181	172982;172983;172984;172985;172986;172987;172988;172989;172990;172991;172992;172993;172994;172995	234078;234079;234080;234081;234082;234083;234084;234085;234086;234087;234088;234089;234090;234091	234084			14	
KLDEQYQKYK	3	Acetyl (K)	1383.7034	0.70343063	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		33.803	24.096	3	0.0033579	14336	160513_QHF_FH_JSI11Kac_5	73.781	61.15			0.12325	0.12256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12325	0.12256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4549200	4445100	104130	0	0	0	0	0	0	4549200	4445100	104130	0	0	0	27650	1961	26182	172996	234092	234092	1983		1	
KLDFPSASFDVVLEK	2	Unmodified	1693.8927	0.89268797	960	P0DPD7			no	no	0	0	0	1				By MS/MS	3	0			2										2	87.548	87.416	2	0.0028453	75981	160511_QHF_FH_JSI12i_3	59.57	35.583			1.0549	1.1406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0549	1.1406	NaN	1	1	Median	11298000	3866200	7431900	0	0	0	0	0	0	0	0	0	11298000	3866200	7431900	27651	960	26183	172997;172998	234093;234094	234094			2	
KLDGFPLLR	1	Unmodified	1057.6284	0.6284152	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	63.562	62.738	2;3	0.00012665	52710	160511_QHF_FH_JSI10i_3	88.948	39.53			0.94021	0.74616	16.904	9	0	Linear	0.99571	0.8099	22.712	2	0	Median	0.60394	0.70794	18.628	3	0	Plateau	0.89674	0.8537	4.5817	2	0	Median	0.73031	0.72697	3.6843	2	0	Median	1698100000	893410000	804720000	546120000	239250000	306870000	439500000	251610000	187890000	574790000	320240000	254560000	137720000	82315000	55409000	27652	937	26184	172999;173000;173001;173002;173003;173004;173005;173006;173007	234095;234096;234097;234098;234099;234100;234101;234102;234103;234104;234105;234106;234107;234108;234109;234110;234111;234112;234113;234114;234115	234103			21	
KLDHVNVVK	2	Unmodified	1050.6186	0.61857879	3550	Q8N5S9	CAMKK1	Calcium/calmodulin-dependent protein kinase kinase 1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	14.152	14.189	3	0.0029711	10900	160511_QHF_FH_JSI12i_3	42.338	30.702			0.73914	0.70541	18.168	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68647	0.62036	NaN	1	0	Median	0.79585	0.80211	NaN	1	0	Median	122040000	69606000	52438000	0	0	0	0	0	0	39796000	21629000	18168000	82248000	47977000	34270000	27653	3550	26185	173008;173009	234116	234116			1	
KLDIVEDSIYIAYGPNGK	2	Unmodified	1994.0361	0.03605774	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	80.294	80.053	3	3.5886E-06	69542	160511_QHF_FH_JSI12i_3	92.977	84.332			1.007	1.013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.007	1.013	NaN	1	0	Median	36263000	18171000	18092000	0	0	0	0	0	0	0	0	0	36263000	18171000	18092000	27654	4996	26186	173010	234117;234118	234118			2	
KLDLEAWFPGSGAFR	1	Unmodified	1692.8624	0.86239089	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			10							4	4	2		98.414	98.213	2;3	5.0056E-05	81152	160511_QHF_FH_JSI10i_3	87.566	85.495			1.003	0.9096	23.426	9	1	Median	1.0656	0.86973	24.084	4	1	Linear	0.79153	0.90113	15.361	3	0	Plateau	0.93878	0.86385	12.941	2	0	Median	NaN	NaN	NaN	0	0	Median	374140000	185320000	188820000	84626000	38204000	46422000	78312000	48238000	30074000	211200000	98880000	112320000	0	0	0	27655	1667	26187	173011;173012;173013;173014;173015;173016;173017;173018;173019;173020	234119;234120;234121;234122;234123;234124;234125;234126;234127;234128;234129;234130;234131;234132;234133;234134;234135;234136;234137;234138	234128			20	
KLDLFANVVHVK	2	Unmodified	1381.8082	0.80817048	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	65.953	65.136	4	0.0024121	55226	160511_QHF_FH_JSI10i_3	54.7	50.613			0.64109	0.62622	5.6522	4	4	Median	0.74157	0.60236	NaN	1	1	Median	0.57861	0.67266	NaN	1	1	Median	0.70077	0.65102	NaN	1	1	Median	0.5865	0.60106	NaN	1	1	Median	159320000	88397000	70924000	23617000	11405000	12212000	24625000	14183000	10441000	44822000	22363000	22459000	66257000	40444000	25812000	27656	386	26188	173021;173022;173023;173024	234139;234140;234141;234142;234143;234144	234141			6	
KLDLFANVVHVK	2	Acetyl (K)	1423.8187	0.81873516	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.791	71.413	3	6.3248E-05	39205	160513_QHF_FH_JSI11Kac_6	100.22	79.841			0.64309	0.64002	30.272	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54411	0.51669	NaN	1	0	Median	0.76008	0.79278	NaN	1	0	Median	36793000	24275000	12518000	0	0	0	0	0	0	18069000	13773000	4295700	18724000	10502000	8222200	27657	386	26188	173025;173026;173027	234145;234146;234147;234148;234149	234145	200		5	
KLDLISELR	1	Unmodified	1085.6445	0.64445919	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		58.888	58.888	3	0.004058	52238	160511_QHF_FH_JSI11i_3	51.276	12.709			0.57512	0.53339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57512	0.53339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15543000	10233000	5309900	0	0	0	0	0	0	15543000	10233000	5309900	0	0	0	27658	2793	26189	173028	234150	234150			1	
KLDLSDTK	2	Unmodified	918.50221	0.50221163	3700	Q8TC12;Q96NR8	RDH11;RDH12	Retinol dehydrogenase 11;Retinol dehydrogenase 12	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	16.782	16.816	2	0.01608	13483	160511_QHF_FH_JSI12i_3	66.299	27.507			1.0463	1.0398	61.721	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48377	0.45394	NaN	1	1	Median	1.0463	1.0398	55.13	2	2	Median	510900000	271230000	239670000	0	0	0	0	0	0	96105000	52148000	43956000	414800000	219080000	195710000	27659	3700	26190	173029;173030;173031	234151;234152;234153	234153			3	
KLDLWMLPEILIIHLK	2	Unmodified	1974.174	0.17401197	1751	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.261	92.54	4	0.00020496	54070	160513_QHF_FH_JSI10Kac_6	86.378	76.847			0.69717	0.83068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69717	0.83068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90196000	54196000	36001000	0	0	0	90196000	54196000	36001000	0	0	0	0	0	0	27660	1751	26191	173032	234154	234154			1	
KLDLWSLPPVLVVHLK	2	Unmodified	1856.1288	0.12877633	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.432	85.712	3	0.0014129	48904	160513_QHF_FH_JSI10Kac_6	58.83	53.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27661	5626	26192	173033	234155	234155			1	
KLDPAQSASR	1	Unmodified	1071.5673	0.5672715	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		8.4702	8.1744	2	0.0021557	5965	160511_QHF_FH_JSI11i_3	61.78	39.039			1.0801	0.93257	18.442	2	0	Median	1.337	1.0625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87258	0.81855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	193300000	89969000	103330000	51259000	20608000	30651000	0	0	0	142040000	69362000	72677000	0	0	0	27662	2470	26193	173034;173035	234156	234156			1	
KLDPDSIPSPIQVIENDR	1	Unmodified	2035.0586	0.058584096	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		87.349	86.78	3	3.0602E-05	77438	160511_QHF_FH_JSI11i_3	72.772	69.111			1.0537	1.0914	44.014	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2674	1.4899	NaN	1	0	Median	0.876	0.79952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69316000	39012000	30305000	0	0	0	17590000	6812300	10778000	51726000	32199000	19527000	0	0	0	27663	614	26194	173036;173037	234157;234158;234159	234158			3	
KLDPELHLDIK	2	Unmodified	1319.7449	0.74490152	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								1	2	5	52.47	52.207	3;4	6.3687E-05	44329	160511_QHF_FH_JSI12i_3	76.655	69.767			0.78	0.75748	19.704	8	1	Median	NaN	NaN	NaN	0	0	Median	0.49069	0.58194	NaN	1	0	Median	0.91275	0.85345	18.013	2	0	Median	0.76342	0.76362	18.454	5	1	Median	1394100000	618840000	775260000	0	0	0	17901000	10653000	7247700	308150000	132480000	175670000	1068000000	475710000	592340000	27664	2324	26195	173038;173039;173040;173041;173042;173043;173044;173045	234160;234161;234162;234163;234164;234165;234166;234167;234168;234169;234170;234171	234166			10	
KLDPGSEETQTLVR	1	Unmodified	1571.8155	0.81550028	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.71	5	7	7				2	4	1	5	8	7	6	38.128	34.954	2;3	2.3867E-30	30712	160511_QHF_FH_JSI11i_3	150.26	127.73			0.92806	0.96277	15.586	26	3	Median	1.3162	1.0899	17.367	5	0	Median	0.74547	0.87957	10.464	8	3	Median	0.93715	0.93304	17.707	7	0	Median	1.0198	1.0667	16.36	6	0	Median	11435000000	5896500000	5538400000	1798000000	809800000	988170000	2367300000	1359700000	1007600000	5142100000	2604200000	2537900000	2127600000	1122800000	1004800000	27665	1284	26196	173046;173047;173048;173049;173050;173051;173052;173053;173054;173055;173056;173057;173058;173059;173060;173061;173062;173063;173064;173065;173066;173067;173068;173069;173070;173071	234172;234173;234174;234175;234176;234177;234178;234179;234180;234181;234182;234183;234184;234185;234186;234187;234188;234189;234190;234191;234192;234193;234194;234195;234196;234197;234198;234199;234200;234201;234202;234203;234204;234205;234206;234207;234208;234209;234210;234211;234212;234213;234214;234215;234216;234217;234218;234219;234220;234221	234179			50	
KLDPGSEETQTLVR	1	Acetyl (K)	1613.8261	0.82606496	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			56.347	45.709	2	0.041756	25334	160513_QHF_FH_JSI10Kac_4	59.542	25.01			1.1374	1.3417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1374	1.3417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3284600	1496300	1788300	0	0	0	3284600	1496300	1788300	0	0	0	0	0	0	27666	1284	26196	173072	234222	234222			1	
KLDPGWNPQIPEK	2	Unmodified	1520.7987	0.798728	4365	Q9BR61	ACBD6	Acyl-CoA-binding domain-containing protein 6	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	51.376	51.141	2;3	0.025058	43746	160511_QHF_FH_JSI12i_3	53.967	44.013			1.2451	1.2918	34.289	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2451	1.2918	34.289	2	1	Median	112970000	53087000	59887000	0	0	0	0	0	0	0	0	0	112970000	53087000	59887000	27667	4365	26197	173073;173074	234223;234224	234223			1	
KLDPPGGQFYNSK	2	Unmodified	1449.7252	0.72522871	692	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							3	3			39.19	37.7	2;3	0.00050357	31487	160511_QHF_FH_JSI10i_3	68.044	56.431			0.78455	0.88058	13.251	5	3	Median	1.1091	0.90102	23.603	2	1	Median	0.75621	0.88058	7.7011	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	222490000	122670000	99817000	79986000	40870000	39116000	142500000	81799000	60702000	0	0	0	0	0	0	27668	692	26198	173075;173076;173077;173078;173079;173080	234225;234226;234227;234228;234229	234226			5	
KLDSELTAR	1	Unmodified	1031.5611	0.56112349	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	16.4	16.426	2;3	0.00011248	13559	160511_QHF_FH_JSI11i_3	68.847	59.633			1.1461	1.1256	19.829	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0114	0.96882	0.6885	2	0	Median	1.3404	1.3584	6.0643	2	1	Median	576990000	290450000	286550000	0	0	0	0	0	0	379780000	199700000	180080000	197220000	90749000	106470000	27669	432	26199	173081;173082;173083;173084	234230;234231;234232;234233	234232			4	
KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK	2	Unmodified	3555.7014	0.70140508	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	99.883	91.992	3;4	9.6067E-163	55214	160513_QHF_FH_JSI10Kac_6	262.33	239.61			0.87361	0.97576	15.949	5	0	Median	1.1172	0.97576	NaN	1	0	Median	0.81941	0.98185	9.3781	2	0	Median	0.7973	0.76556	NaN	1	0	Median	1.1113	1.1747	NaN	1	0	Median	1669700000	886350000	783300000	304910000	155120000	149800000	831380000	462380000	369000000	107980000	63658000	44323000	425370000	205190000	220180000	27670	1387	26200	173085;173086;173087;173088;173089	234234;234235;234236;234237;234238;234239;234240;234241	234240			8	
KLDTNSDGQLDFSEFLNLIGGLAMACHDSFLK	2	Oxidation (M)	3571.6963	0.69631971	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			99.151	93.43	4	1.5228E-29	54794	160513_QHF_FH_JSI10Kac_6	125.71	111.23			0.49821	0.59779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49821	0.59779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92670000	50551000	42120000	0	0	0	92670000	50551000	42120000	0	0	0	0	0	0	27671	1387	26200	173090	234242	234242		1038	1	
KLDVEEPDSANSSFYSTR	1	Unmodified	2043.9385	0.93852854	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	3.83		6	3					1		2	2	4	2	49.611	47.833	2;3	1.3823E-12	42236	160511_QHF_FH_JSI10i_2	152.9	146.76			0.84579	0.84941	19.435	9	2	Median	1.3396	1.1442	NaN	1	0	Median	0.65023	0.81227	27.737	2	1	Median	0.968	0.94782	18.048	4	1	Median	0.75812	0.80054	8.3806	2	0	Median	590470000	331850000	258620000	111850000	58245000	53609000	124900000	74376000	50521000	262110000	146760000	115350000	91613000	52472000	39141000	27672	2587	26201	173091;173092;173093;173094;173095;173096;173097;173098;173099;173100	234243;234244;234245;234246;234247;234248;234249;234250;234251;234252;234253;234254;234255	234251			13	
KLDVSIEMPEELDISQLR	1	Unmodified	2114.0929	0.092920692	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	95.053	94.851	2;3	3.4931E-08	82186	160511_QHF_FH_JSI12i_3	103.85	83.483			0.93667	0.97202	23.469	7	1	Median	1.2102	1.0342	NaN	1	0	Median	0.73952	0.93669	NaN	1	0	Median	1.1773	1.1222	29.417	2	0	Median	1.3831	1.3844	32.821	3	1	Plateau	169050000	82396000	86656000	10683000	6428800	4254100	13784000	8161300	5623100	47763000	19552000	28210000	96822000	48253000	48568000	27673	1573	26202	173101;173102;173103;173104;173105;173106;173107;173108;173109	234256;234257;234258;234259;234260;234261;234262;234263;234264;234265;234266;234267;234268	234266			13	
KLDYGQHVVAGTPGR	1	Unmodified	1596.8372	0.83723877	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		27.629	26.955	3	2.218E-05	21936	160511_QHF_FH_JSI9i_3	108.34	101.63			0.70004	0.73166	13.37	4	2	Median	0.99232	0.7922	NaN	1	0	Median	0.61093	0.69863	NaN	1	0	Median	0.69876	0.67115	18.742	2	2	Median	NaN	NaN	NaN	0	0	Median	414610000	222840000	191770000	160220000	78327000	81897000	127310000	77144000	50169000	127070000	67366000	59702000	0	0	0	27674	1481	26203	173110;173111;173112;173113	234269;234270;234271;234272;234273;234274;234275;234276;234277	234274			9	
KLDYGQHVVAGTPGR	1	Acetyl (K)	1638.8478	0.84780346	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	44.787	35.51	3	0.002492	19727	160513_QHF_FH_JSI10Kac_6	82.813	55.164			0.56694	0.61382	78.122	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4786	1.7129	NaN	1	0	Median	0.37441	0.36964	NaN	1	0	Median	0.56694	0.61382	NaN	1	0	Median	50398000	32224000	18174000	0	0	0	13843000	6788900	7054600	24849000	17528000	7320900	11705000	7907100	3798400	27675	1481	26203	173114;173115;173116;173117	234278;234279;234280;234281;234282	234282	1483		5	
KLEAADLVIFQFPLQWFGVPAILK	2	Unmodified	2742.5513	0.55128108	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	4	1	1	101.48	95.003	2;3;4	4.1453E-195	56082	160513_QHF_FH_JSI10Kac_6	292.17	262.44			0.83706	0.9993	89.456	6	1	Median	1.2883	1.0884	NaN	1	0	Median	0.83706	0.9993	10.974	4	0	Median	NaN	NaN	NaN	0	0	Median	0.10865	0.11526	NaN	1	1	Median	4384700000	2092300000	2292500000	1120400000	413850000	706600000	2904800000	1410500000	1494300000	9300000	0	9300000	350200000	267870000	82325000	27676	1080	26204	173118;173119;173120;173121;173122;173123;173124	234283;234284;234285;234286;234287;234288;234289;234290;234291;234292;234293	234291			11	
KLEAAEDIAYQLSR	1	Unmodified	1605.8362	0.83623572	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.54		8	5						1	3	2	5	4	61.7	61.048	2;3	2.5763E-13	54081	160511_QHF_FH_JSI11i_3	121.18	101.5			0.78846	0.83848	13.692	12	1	Median	1.0019	0.85706	6.9065	2	0	Median	0.60592	0.74245	1.0079	2	0	Median	0.9043	0.91738	15.647	4	1	Median	0.72615	0.77728	12.484	4	0	Median	5066300000	2616400000	2449900000	516870000	236700000	280170000	762590000	391000000	371590000	2142600000	965420000	1177200000	1644200000	1023300000	620920000	27677	1424	26205	173125;173126;173127;173128;173129;173130;173131;173132;173133;173134;173135;173136;173137;173138	234294;234295;234296;234297;234298;234299;234300;234301;234302;234303;234304;234305;234306;234307;234308;234309;234310;234311;234312;234313;234314;234315	234300			22	
KLEAAEER	1	Unmodified	944.49271	0.49270958	1105;3925	P16949;Q9H169;Q93045	STMN1;STMN4;STMN2	Stathmin;Stathmin-4;Stathmin-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.98		7	7					6	1	5	5	7	4	6.8777	3.5211	2;3	0.00036927	3869	160511_QHF_FH_JSI11i_3	77.355	52.433			0.94067	0.95093	26.289	21	0	Median	1.085	0.89327	15.873	5	0	Median	0.83896	1.0218	18.523	5	0	Median	0.96402	0.95093	12.818	7	0	Median	0.77392	0.83451	49.932	4	0	Median	15404000000	8180600000	7222900000	2017100000	953650000	1063500000	2367400000	1173300000	1194100000	7431400000	3670000000	3761400000	3587700000	2383700000	1203900000	27678	1105;3925	26206	173139;173140;173141;173142;173143;173144;173145;173146;173147;173148;173149;173150;173151;173152;173153;173154;173155;173156;173157;173158;173159	234316;234317;234318;234319;234320;234321;234322;234323;234324;234325;234326;234327;234328;234329;234330;234331;234332;234333;234334;234335;234336;234337;234338;234339;234340;234341;234342;234343;234344;234345;234346;234347;234348	234318			32	
KLEAEADK	2	Unmodified	902.47091	0.4709115	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		6.2503	5.9381	2	0.041475	3749	160511_QHF_FH_JSI11i_2	39.305	9.9284			0.96875	1.0995	12.63	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98131	1.2022	NaN	1	0	Median	0.95635	1.0056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70951000	37293000	33658000	0	0	0	33240000	18690000	14550000	37711000	18603000	19108000	0	0	0	27679	4039	26207	173160;173161	234349;234350	234349			2	
KLEAELLQIEER	1	Unmodified	1469.809	0.80895834	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	59.336	59.056	2;3	0.00016761	52454	160511_QHF_FH_JSI11i_3	56.569	44.593			1.1065	1.058	22.571	5	0	Median	NaN	NaN	NaN	0	0	Median	1.3624	1.6848	NaN	1	0	Median	1.0779	1.0222	4.8659	2	0	Median	1.0294	1.0594	12.004	2	0	Median	237270000	123480000	113790000	0	0	0	29359000	14940000	14419000	140820000	73046000	67777000	67093000	35495000	31598000	27680	3936	26208	173162;173163;173164;173165;173166	234351;234352;234353;234354;234355	234353			4	
KLEAMTNSK	2	Unmodified	1020.5274	0.52738052	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	2	2	9.4484	9.1718	2;3	0.00019355	6814	160511_QHF_FH_JSI11i_3	85.807	65.252			0.98106	0.93013	94.525	8	6	Median	5.0222	4.1599	NaN	1	1	Median	0.32615	0.38163	90.351	3	3	Median	0.98106	0.93013	29.372	2	0	Median	0.92767	0.93889	135.37	2	2	Median	3753800000	1885700000	1868100000	99680000	19539000	80140000	811370000	463250000	348120000	720960000	322130000	398830000	2121800000	1080800000	1041000000	27681	1139	26209	173167;173168;173169;173170;173171;173172;173173;173174	234356;234357;234358;234359;234360;234361;234362;234363	234356			7	
KLEATIIGEWVK	2	Unmodified	1385.7919	0.79185171	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	73.095	72.948	3	0.0013125	63200	160511_QHF_FH_JSI12i_3	53.448	37.098			1.2896	1.265	0.96678	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3118	1.2564	NaN	1	0	Median	1.2678	1.2737	NaN	1	0	Median	87249000	42638000	44611000	0	0	0	0	0	0	30445000	17241000	13203000	56804000	25396000	31408000	27682	5305	26210	173175;173176	234364;234365;234366	234366			3	
KLEDDRNSLQAAK	2	Unmodified	1486.774	0.77396981	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		13.376	13.376	3	0.0020485	10802	160511_QHF_FH_JSI11i_3	65.043	56.999			1.1723	1.0799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1723	1.0799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69243000	35404000	33839000	0	0	0	0	0	0	69243000	35404000	33839000	0	0	0	27683	2899	26211	173177	234367	234367			1	
KLEDGPK	2	Unmodified	785.42832	0.42831841	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	5.5301	5.2359	2	0.012361	3033	160511_QHF_FH_JSI9i_2	69.825	34.331			0.88786	0.91468	18.463	11	0	Median	1.3322	1.2483	9.4186	2	0	Median	0.77974	0.67993	16.937	3	0	Plateau	0.86571	0.84642	5.6409	3	0	Median	1.0425	0.97175	4.95	3	0	Plateau	113200000000	52852000000	60347000000	18695000000	7654900000	11040000000	22246000000	11201000000	11045000000	32533000000	16169000000	16364000000	39726000000	17828000000	21898000000	27684	2072	26212	173178;173179;173180;173181;173182;173183;173184;173185;173186;173187;173188	234368;234369;234370;234371;234372;234373;234374;234375;234376;234377;234378;234379;234380;234381;234382;234383;234384;234385;234386;234387	234381			20	
KLEDGPKFLK	3	Acetyl (K)	1215.6863	0.68632401	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.627							1	5	8	4	4	3	3	52.176	42.314	2;3	1.1227E-05	23575	160513_QHF_FH_JSI11Kac_5	106.29	30.997			0.79666	0.74446	34.268	14	0	Median	0.92777	0.77967	15.029	4	0	Median	0.90516	1.0712	8.8607	4	0	Median	0.45753	0.43039	1.0124	3	0	Plateau	0.63784	0.69365	4.0858	3	0	Plateau	654910000	414340000	240570000	91756000	50398000	41359000	155070000	84285000	70784000	294750000	216250000	78499000	113340000	63405000	49932000	27685	2072	26213	173189;173190;173191;173192;173193;173194;173195;173196;173197;173198;173199;173200;173201;173202	234388;234389;234390;234391;234392;234393;234394;234395;234396;234397;234398;234399;234400;234401;234402;234403;234404;234405	234394	2149;2150		18	
KLEDQNEYESR	1	Unmodified	1409.6423	0.64228694	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.907	10.998	2	0.0044532	8298	160511_QHF_FH_JSI12i_3	60.434	50.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27686	4248	26214	173203	234406	234406			1	
KLEDVKNSPTFK	3	Acetyl (K)	1446.7718	0.77184455	1858	P55327	TPD52	Tumor protein D52	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		47.49	37.005	3	0.0025875	20810	160513_QHF_FH_JSI11Kac_5	70.089	49.426			0.60072	0.59763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60072	0.59763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7588000	4161500	3426500	0	0	0	0	0	0	7588000	4161500	3426500	0	0	0	27687	1858	26215	173204	234407	234407	1873		1	
KLEEAASR	1	Unmodified	902.48214	0.48214489	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	5.4258	5.2804	2;3	0.0047881	3116	160511_QHF_FH_JSI11i_3	46.462	9.1177			1.2929	1.2264	49.164	5	0	Median	1.6446	1.4063	NaN	1	0	Median	1.4675	1.795	NaN	1	0	Median	1.2751	1.1897	4.2945	2	0	Median	0.4802	0.48999	NaN	1	0	Median	882410000	372140000	510270000	65706000	24439000	41267000	86096000	21294000	64802000	633380000	275800000	357580000	97222000	50606000	46615000	27688	5289	26216	173205;173206;173207;173208;173209	234408;234409;234410	234408			3	
KLEEAGFHTVEAVAYAPK	2	Unmodified	1959.0102	0.010177341	2247	Q06609	RAD51	DNA repair protein RAD51 homolog 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.97	53.732	3	0.00010932	46112	160511_QHF_FH_JSI12i_3	78.661	68.496			1.5244	1.5839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5244	1.5839	NaN	1	1	Median	40650000	16588000	24062000	0	0	0	0	0	0	0	0	0	40650000	16588000	24062000	27689	2247	26217	173210	234411	234411			1	
KLEEALMADILSR	1	Unmodified	1487.8018	0.80176447	5228	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	77.701	77.373	3	1.9285E-05	67110	160511_QHF_FH_JSI12i_3	83.499	68.813			1.1169	1.1429	33.786	3	1	Median	NaN	NaN	NaN	0	0	Median	1.5789	1.917	NaN	1	1	Median	1.0778	1.0157	NaN	1	0	Median	1.1169	1.1429	NaN	1	0	Median	112000000	50085000	61910000	0	0	0	14792000	6327600	8464100	27303000	10905000	16399000	69900000	32853000	37048000	27690	5228	26218	173211;173212;173213;173214	234412;234413;234414;234415	234415			4	
KLEEEGEQFVK	2	Unmodified	1334.6718	0.67179615	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.79		11	5				1	6		5	4	6	8	31.897	29.739	2;3	1.5515E-05	24977	160511_QHF_FH_JSI12i_3	112.13	83.399			0.95061	0.91213	37.956	18	10	Median	1.1164	0.93051	42.219	5	4	Median	0.61668	0.75088	22.308	2	1	Median	0.97083	0.92753	37.583	6	3	Median	1.0707	1.0858	42.253	5	2	Median	2141300000	1087600000	1053700000	365830000	194120000	171710000	346710000	191310000	155400000	748940000	391020000	357920000	679810000	311170000	368650000	27691	1207	26219	173215;173216;173217;173218;173219;173220;173221;173222;173223;173224;173225;173226;173227;173228;173229;173230;173231;173232;173233;173234;173235;173236;173237	234416;234417;234418;234419;234420;234421;234422;234423;234424;234425;234426;234427;234428;234429;234430;234431;234432;234433;234434;234435;234436;234437;234438;234439;234440;234441;234442	234441			26	
KLEEEGEQFVKK	3	Acetyl (K)	1504.7773	0.77732386	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	45.557	35.392	3	0.0012342	19967	160513_QHF_FH_JSI11Kac_5	78.324	53.471			0.81695	0.88944	15.91	6	0	Median	0.89479	0.75681	NaN	1	0	Median	0.85901	1.014	12.108	2	0	Median	0.70785	0.70441	NaN	1	0	Median	0.81695	0.88944	0.1407	2	0	Median	77537000	42756000	34781000	7943400	4971100	2972300	19899000	12760000	7139000	21272000	12047000	9224800	28422000	12978000	15445000	27692	1207	26220	173238;173239;173240;173241;173242;173243	234443;234444;234445;234446;234447	234445	1080		5	
KLEEEQIILEDQNCK	2	Unmodified	1887.9248	0.92479273	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3								1	4	3	46.282	45.75	2;3	3.1474E-15	38934	160511_QHF_FH_JSI12i_3	191.05	176.79			1.0112	0.98365	30.944	8	3	Median	NaN	NaN	NaN	0	0	Median	0.55868	0.7033	NaN	1	1	Median	0.96886	0.94588	36.302	4	2	Median	1.2141	1.2053	17.844	3	0	Median	1043900000	517550000	526300000	0	0	0	96272000	60644000	35628000	461740000	226250000	235490000	485840000	230660000	255180000	27693	1436	26221	173244;173245;173246;173247;173248;173249;173250;173251	234448;234449;234450;234451;234452;234453;234454;234455;234456;234457	234455			10	
KLEEFQK	2	Unmodified	920.49673	0.49673232	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.377	14.45	2	0.056484	11192	160511_QHF_FH_JSI12i_3	53.968	9.6187			0.39777	0.40689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39777	0.40689	NaN	1	1	Median	111340000	66936000	44399000	0	0	0	0	0	0	0	0	0	111340000	66936000	44399000	27694	8	26222	173252	234458	234458			1	
KLEEGGPVYSPPAEVVVK	2	Unmodified	1897.0197	0.019679395	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	56.084	55.329	3	2.3835E-05	48693	160511_QHF_FH_JSI10i_2	89.846	80.563			0.98926	0.99534	8.2211	4	1	Median	NaN	NaN	NaN	0	0	Median	0.76188	0.94518	NaN	1	1	Median	1.049	1.0216	NaN	1	0	Median	0.98926	1.0505	11.311	2	0	Median	518820000	284020000	234790000	0	0	0	110950000	72378000	38568000	151780000	82253000	69522000	256090000	129390000	126700000	27695	655	26223	173253;173254;173255;173256	234459;234460;234461;234462;234463;234464	234463			6	
KLEEIPK	2	Unmodified	855.50657	0.50656873	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	4.8	5.11		3	1					1		1		1	3	18.842	16.386	2;3	0.011897	10431	160513_QHF_FH_JSI11Kac_5	57.281	9.4324			0.5213	0.58635	66.981	5	5	Median	0.3891	0.3332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1162	2.0641	NaN	1	1	Median	0.51719	0.57422	6.3935	3	3	Plateau	452430000	252490000	199940000	66068000	49750000	16318000	0	0	0	4152500	1703300	2449200	382210000	201040000	181170000	27696	110	26224	173257;173258;173259;173260;173261	234465;234466;234467;234468;234469	234468			5	
KLEELEK	2	Unmodified	887.4964	0.49639797	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	13.388	13.462	2	0.020794	10418	160511_QHF_FH_JSI12i_3	78.334	7.4156			0.68378	0.70644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68378	0.70644	NaN	1	1	Median	145490000	93678000	51816000	0	0	0	0	0	0	0	0	0	145490000	93678000	51816000	27697	4559	26225	173262	234470	234470			1	
KLEELELDEQQK	2	Unmodified	1500.7672	0.7671531	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	4	4	38.216	37.588	2;3	6.7771E-12	31931	160511_QHF_FH_JSI12i_3	138.24	119.41			1.0067	1.0709	27.448	11	1	Median	1.0067	0.84845	NaN	1	0	Median	0.91005	1.1276	9.7007	2	0	Median	1.0409	0.9678	18.244	4	0	Median	1.3293	1.3883	41.591	4	1	Median	784730000	367970000	416760000	23208000	9657800	13550000	139820000	75068000	64752000	264760000	122310000	142450000	356940000	160930000	196010000	27698	1453	26226	173263;173264;173265;173266;173267;173268;173269;173270;173271;173272;173273	234471;234472;234473;234474;234475;234476;234477;234478;234479;234480;234481;234482;234483;234484;234485;234486;234487;234488	234488			18	
KLEELELDEQQRK	2	Unmodified	1656.8683	0.86826413	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		30.225	30.225	3	0.028575	26037	160511_QHF_FH_JSI11i_3	41.743	23.378			0.68777	0.65792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68777	0.65792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180530000	121280000	59248000	0	0	0	0	0	0	180530000	121280000	59248000	0	0	0	27699	2191	26227	173274	234489	234489			1	
KLEELEQK	2	Unmodified	1015.555	0.55497548	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.563	14.34	2	0.032613	11360	160511_QHF_FH_JSI11i_2	58.433	10.15			0.4813	0.48973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4813	0.48973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40407000	28856000	11552000	0	0	0	0	0	0	40407000	28856000	11552000	0	0	0	27700	1528	26228	173275	234490	234490			1	
KLEELHHK	2	Unmodified	1032.5716	0.5716286	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.7019	5.7975	2	0.012822	3379	160511_QHF_FH_JSI12i_3	53.089	35.703			0.79662	0.79999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79662	0.79999	NaN	1	0	Median	54736000	26235000	28501000	0	0	0	0	0	0	0	0	0	54736000	26235000	28501000	27701	2732	26229	173276	234491	234491			1	
KLEELLIK	2	Unmodified	984.62193	0.62193284	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.094	44.973	3	0.0050009	39650	160511_QHF_FH_JSI11i_3	48.283	8.2815			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27702	3212	26230	173277;173278	234492;234493	234492			2	
KLEELQQK	2	Unmodified	1014.571	0.5709599	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	12.248	11.777	2	0.011689	9015	160511_QHF_FH_JSI11i_2	71.692	6.4457			0.54031	0.56817	6.409	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53854	0.543	NaN	1	1	Median	0.54209	0.59452	NaN	1	1	Median	102440000	57623000	44815000	0	0	0	0	0	0	71514000	41597000	29917000	30924000	16026000	14898000	27703	1500	26231	173279;173280	234494;234495	234495			2	
KLEENPYDLDAWSILIR	1	Unmodified	2074.0735	0.073505879	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	90.566	82.985	3	2.7093E-05	44068	160513_QHF_FH_JSI12Kac_6	85.808	73.145			0.79272	0.87862	25.274	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63634	0.73483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98753	1.0505	NaN	1	0	Median	181070000	107880000	73195000	0	0	0	115400000	73374000	42029000	0	0	0	65667000	34501000	31166000	27704	2338	26232	173281;173282	234496;234497	234496			2	
KLEEVER	1	Unmodified	901.4869	0.48689592	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.08		8	4					3		3	3	5	4	9.5445	7.1687	2;3	0.0012854	6234	160511_QHF_FH_JSI11i_2	86.794	18.813			0.90947	0.92423	20.142	13	3	Median	1.3466	1.1485	7.1922	2	1	Median	0.6827	0.84362	15.735	3	0	Median	0.94608	0.95199	23.856	4	2	Median	0.79559	0.79931	19.321	4	0	Median	1752700000	899930000	852800000	298680000	134200000	164480000	214720000	128200000	86527000	703590000	363250000	340340000	535730000	274280000	261450000	27705	2502	26233	173283;173284;173285;173286;173287;173288;173289;173290;173291;173292;173293;173294;173295;173296;173297	234498;234499;234500;234501;234502;234503;234504;234505;234506;234507;234508;234509;234510	234505			12	
KLEEVERK	2	Unmodified	1029.5819	0.58185894	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			6.9376	6.4168	3	0.008892	4368	160511_QHF_FH_JSI10i_3	60.398	34.014			0.63261	0.74239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63261	0.74239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212380000	121850000	90533000	0	0	0	212380000	121850000	90533000	0	0	0	0	0	0	27706	2502	26234	173298	234511;234512	234512			2	
KLEEVVNK	2	Unmodified	957.5495	0.54949617	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	13.339	13.292	2;3	0.0090988	10629	160511_QHF_FH_JSI11i_3	47.603	22.044			2.5685	2.6045	35.967	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.777	1.7303	38.371	2	2	Median	2.5685	2.6045	NaN	1	1	Median	302840000	113150000	189680000	0	0	0	0	0	0	162160000	73632000	88529000	140670000	39523000	101150000	27707	3754	26235	173299;173300;173301	234513;234514;234515	234513			3	
KLEEVVQILGDK	2	Unmodified	1369.7817	0.78168095	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	2	5	3	63.676	63.263	2;3	8.9598E-05	56015	160511_QHF_FH_JSI11i_3	110.29	89.294			1.93	1.9151	164.11	11	11	Median	0.32792	0.29162	NaN	1	1	Median	0.77364	0.95576	196.69	2	2	Median	1.93	1.9151	179.31	5	5	Median	3.7726	3.8827	200.06	3	3	Median	1181900000	594940000	586930000	36129000	25713000	10417000	108330000	74362000	33972000	433590000	206120000	227480000	603810000	288750000	315060000	27708	4532	26236	173302;173303;173304;173305;173306;173307;173308;173309;173310;173311;173312	234516;234517;234518;234519;234520;234521;234522;234523;234524;234525;234526;234527;234528;234529;234530	234517			15	
KLEGDSTDLSDQIAELQAQIAELK	2	Unmodified	2614.3338	0.3337559	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	101.53	101.46	3	1.0666E-42	88187	160511_QHF_FH_JSI12i_3	194.62	181.3			1.1486	1.175	38.914	5	0	Median	1.4122	1.2	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0016	0.98149	25.452	2	0	Median	1.4777	1.557	57.212	2	0	Median	2375100000	1179700000	1195400000	372810000	157750000	215050000	0	0	0	680640000	333450000	347190000	1321700000	688510000	633150000	27709	1436	26237	173313;173314;173315;173316;173317	234531;234532;234533;234534;234535;234536;234537	234536			7	
KLEGELTEEVEMAK	2	Unmodified	1604.7967	0.79673867	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	50.237	50.001	2;3	0.002017	42587	160511_QHF_FH_JSI12i_3	58.676	42.423			0.88572	0.89739	0.74932	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88572	0.89739	0.74932	2	0	Median	165520000	91336000	74188000	0	0	0	0	0	0	0	0	0	165520000	91336000	74188000	27710	2560	26238	173318;173319	234538;234539;234540	234538			2	
KLEGGQQVGMHSK	2	Unmodified	1397.7085	0.70853279	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		10.299	9.6561	3	0.014686	7241	160511_QHF_FH_JSI11i_3	37.864	26.172			1.3626	1.1186	NaN	1	1	Median	1.3626	1.1186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45197000	20701000	24495000	45197000	20701000	24495000	0	0	0	0	0	0	0	0	0	27711	3716	26239	173320;173321	234541;234542	234541			2	
KLEGNSPQGSNQGVK	2	Unmodified	1541.7798	0.77978347	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.16		7	7					1		3	5	4	3	9.2047	8.2241	2;3	7.23E-22	6335	160511_QHF_FH_JSI11i_3	180.84	162.17			0.89821	0.95033	29.143	14	2	Median	1.6143	1.3288	13.081	3	1	Median	0.85779	1.0426	40.446	5	1	Median	0.90952	0.86891	8.8383	3	0	Median	0.76028	0.77717	10.193	3	0	Median	2405300000	1188800000	1216500000	300370000	104200000	196160000	792750000	425270000	367490000	1101600000	539270000	562320000	210580000	120070000	90508000	27712	1927	26240	173322;173323;173324;173325;173326;173327;173328;173329;173330;173331;173332;173333;173334;173335;173336	234543;234544;234545;234546;234547;234548;234549;234550;234551;234552;234553;234554;234555;234556;234557;234558;234559;234560;234561;234562;234563;234564;234565;234566	234546			24	
KLEHFTK	2	Unmodified	901.50215	0.50215205	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	8.6641	8.3034	2;3	0.01601	5932	160511_QHF_FH_JSI11i_3	70.525	39.222			1.5528	1.5567	31.844	3	0	Plateau	1.2442	0.99534	NaN	1	0	Median	0.73799	0.84056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5528	1.5567	NaN	1	0	Median	536850000	282280000	254580000	172790000	87584000	85205000	170550000	105010000	65538000	0	0	0	193510000	89680000	103830000	27713	3003	26241	173337;173338;173339;173340	234567;234568;234569;234570	234567			4	
KLEHVIK	2	Unmodified	865.53854	0.53853756	428	O60563;O60583	CCNT1;CCNT2	Cyclin-T1;Cyclin-T2	yes	no	0	0	0	1				By MS/MS	3	0			1										1	8.6489	8.7464	3	0.0054677	6153	160511_QHF_FH_JSI12i_3	53.166	27.43			0.68044	0.69352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68044	0.69352	NaN	1	0	Median	178960000	87550000	91405000	0	0	0	0	0	0	0	0	0	178960000	87550000	91405000	27714	428	26242	173341	234571;234572	234572			2	
KLEISSGK	2	Unmodified	860.49673	0.49673232	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	11.39	11.106	2;3	0.0044903	8243	160511_QHF_FH_JSI12i_3	47.603	37.822			0.87223	0.89564	41.095	7	0	Median	2.2921	1.874	NaN	1	0	Median	1.0798	1.2359	1.533	2	0	Median	0.64453	0.60943	11.33	2	0	Median	0.86336	0.88454	1.763	2	0	Median	1144300000	580580000	563680000	42939000	11752000	31186000	222870000	122470000	100400000	297840000	170040000	127800000	580610000	276320000	304300000	27715	3709	26243	173342;173343;173344;173345;173346;173347;173348	234573;234574;234575;234576;234577;234578;234579;234580;234581	234580			9	
KLELDILPLQEANAELSEK	2	Unmodified	2152.1627	0.16271482	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	96.052	95.919	2;3	3.2995E-06	82936	160511_QHF_FH_JSI12i_3	89.049	80.449			0.973	0.96678	16.904	5	2	Median	NaN	NaN	NaN	0	0	Median	0.6764	0.8011	8.5607	2	1	Median	1.1657	1.0998	7.6632	2	1	Median	0.973	0.96678	NaN	1	0	Median	106520000	58545000	47971000	0	0	0	14885000	8978800	5906100	61555000	33344000	28211000	30077000	16223000	13854000	27716	1016	26244	173349;173350;173351;173352;173353	234582;234583;234584;234585;234586;234587;234588;234589	234589			8	
KLELSDNIISGGLEVLAEK	2	Unmodified	2027.115	0.11503634	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	2	3	100.98	100.95	2;3	1.0961E-53	87591	160511_QHF_FH_JSI12i_3	214.46	181.72			0.80416	0.82717	19.071	8	4	Median	1.2979	1.141	NaN	1	0	Median	0.63068	0.76086	9.0282	2	1	Median	1.1029	1.0354	20.977	2	1	Median	0.77625	0.77216	5.5609	3	2	Median	2426700000	1332700000	1094000000	103220000	34767000	68456000	260360000	150850000	109510000	392410000	157430000	234980000	1670700000	989600000	681070000	27717	4419	26245	173354;173355;173356;173357;173358;173359;173360;173361	234590;234591;234592;234593;234594;234595;234596;234597;234598;234599;234600	234597			11	
KLELSDNR	1	Unmodified	973.51926	0.51925868	1487	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	4	3	2	13.697	13.219	2;3	0.0016072	10473	160511_QHF_FH_JSI10i_3	56.729	39.953			0.75165	0.74138	21.865	12	0	Plateau	1.0884	0.90213	12.573	4	0	Linear	0.71504	0.77189	10.788	3	0	Plateau	0.74552	0.70521	29.526	3	0	Plateau	0.65371	0.6716	1.6565	2	0	Median	7245500000	3888900000	3356700000	1254600000	563950000	690620000	1885300000	1062100000	823130000	3226000000	1780300000	1445700000	879710000	482510000	397210000	27718	1487	26246	173362;173363;173364;173365;173366;173367;173368;173369;173370;173371;173372;173373;173374	234601;234602;234603;234604;234605;234606;234607;234608;234609;234610;234611;234612;234613;234614;234615;234616;234617;234618	234606			18	
KLELSENR	1	Unmodified	987.53491	0.53490874	3871	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		6	8						4	5	6	4	3	15.596	13.422	2;3	0.00015703	11219	160511_QHF_FH_JSI9i_2	90.709	58.774			0.97187	0.98533	13.762	17	1	Median	1.292	1.0876	13.108	5	0	Median	0.87431	0.99001	14.586	5	1	Median	0.99639	0.94168	7.3464	4	0	Median	0.79119	0.80906	2.8951	3	0	Plateau	6996100000	3460900000	3535100000	1182000000	473310000	708720000	2036600000	1120300000	916300000	3273200000	1554700000	1718500000	504140000	312570000	191580000	27719	3871	26247	173375;173376;173377;173378;173379;173380;173381;173382;173383;173384;173385;173386;173387;173388;173389;173390;173391;173392	234619;234620;234621;234622;234623;234624;234625;234626;234627;234628;234629;234630;234631;234632;234633;234634;234635;234636;234637;234638;234639;234640;234641;234642;234643;234644;234645;234646;234647	234636			29	
KLEMATNK	2	Unmodified	933.49535	0.49535211	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	10.436	10.019	3	0.00095021	7314	160511_QHF_FH_JSI12i_3	76.064	52.636			0.81234	0.94057	31.989	3	1	Median	1.193	0.9734	NaN	1	0	Median	0.81234	0.94057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53947	0.55025	NaN	1	1	Median	418940000	202440000	216500000	56125000	32222000	23904000	117110000	63973000	53139000	0	0	0	245700000	106250000	139460000	27720	5289	26248	173393;173394;173395	234648;234649	234649			1	
KLEMDLK	2	Unmodified	875.47864	0.47863942	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							2	2	4	3	28.413	27.827	2;3	0.0032182	23645	160511_QHF_FH_JSI11i_3	65.038	17.971			0.91726	0.80054	85.243	11	5	Median	1.0911	0.91609	27.255	2	0	Median	0.8108	0.95356	46.198	2	1	Median	1.1882	1.1313	136.36	4	2	Median	0.71704	0.80054	79.35	3	2	Median	2990500000	1223500000	1766900000	162140000	51869000	110270000	235530000	127460000	108070000	768310000	334400000	433910000	1824500000	709780000	1114700000	27721	1436	26249	173396;173397;173398;173399;173400;173401;173402;173403;173404;173405;173406	234650;234651;234652;234653;234654;234655;234656;234657;234658;234659	234651			10	
KLEMHVYSK	2	Unmodified	1133.5903	0.59031513	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	21.219	20.59	3	0.0097057	16443	160511_QHF_FH_JSI12i_3	37.995	33.696			1.6289	1.5037	14.268	2	1	Median	1.6561	1.3594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6022	1.6633	NaN	1	0	Median	158030000	58492000	99541000	42583000	17222000	25361000	0	0	0	0	0	0	115450000	41271000	74180000	27722	5366	26250	173407;173408	234660;234661;234662	234661			3	
KLEMTELLLQQFSSR	1	Unmodified	1821.9659	0.96586969	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		93.307	92.849	3	0.0019949	82490	160511_QHF_FH_JSI11i_3	49.463	38.193			1.0657	1.1405	42.81	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2737	1.5437	NaN	1	1	Median	0.89158	0.84263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28612000	8811300	19800000	0	0	0	5265300	1699100	3566200	23346000	7112100	16234000	0	0	0	27723	2270	26251	173409;173410;173411;173412	234663;234664;234665;234666	234663			4	
KLENCNYAVELGK	2	Unmodified	1536.7606	0.76062794	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3.8	3.76		4	5					1			3	3	4	39.507	37.917	2;3	3.1413E-10	32014	160511_QHF_FH_JSI12i_3	146.07	0			0.78529	0.82686	28.366	10	4	Median	NaN	NaN	NaN	0	0	Median	0.60176	0.70848	25.345	3	2	Median	0.63285	0.61822	12.347	3	0	Plateau	1.0389	1.0906	18.867	4	2	Median	2191900000	872510000	1319400000	0	0	0	283260000	170770000	112490000	787300000	380690000	406610000	1121400000	321050000	800310000	27724	1039	26252	173413;173414;173415;173416;173417;173418;173419;173420;173421;173422	234667;234668;234669;234670;234671;234672;234673;234674;234675;234676;234677;234678;234679;234680;234681;234682	234679			16	
KLENCNYAVELGKHPAK	3	Acetyl (K)	2012.0149	0.014945143	1039	P13797	PLS3	Plastin-3	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		49.007	39.305	3	0.012112	21385	160513_QHF_FH_JSI11Kac_6	60.209	51.278			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27725	1039	26253	173423	234683	234683	869		1	
KLENDTISK	2	Unmodified	1046.5608	0.56078914	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	10.702	10.521	2	0.0002868	7776	160511_QHF_FH_JSI12i_3	106.2	49.151			0.80234	0.87686	86.503	7	6	Median	2.7554	2.3404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62453	0.63518	97.258	3	3	Median	0.80234	0.87686	90.922	3	2	Median	753310000	318180000	435130000	52088000	12740000	39348000	0	0	0	239430000	116650000	122780000	461780000	188790000	273000000	27726	2727	26254	173424;173425;173426;173427;173428;173429;173430	234684;234685;234686;234687;234688;234689;234690	234689			7	
KLENEVEQR	1	Unmodified	1143.5884	0.58840088	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.58		4	4					3		1	1	4	5	9.9321	8.697	2;3	0.00033491	6834	160511_QHF_FH_JSI11i_3	82.749	40.64			0.9555	1.0319	13.338	9	0	Median	1.3232	1.1222	NaN	1	0	Median	0.91981	1.1303	NaN	1	0	Median	1.0716	1.0481	11.371	4	0	Median	0.82727	0.8443	14.483	3	0	Plateau	1035500000	517910000	517550000	91884000	47120000	44764000	134710000	70649000	64063000	456750000	217990000	238760000	352110000	182150000	169960000	27727	1016	26255	173431;173432;173433;173434;173435;173436;173437;173438;173439;173440;173441	234691;234692;234693;234694;234695;234696;234697;234698;234699;234700;234701;234702;234703;234704;234705;234706;234707;234708;234709	234692			19	
KLENSPLGEALR	1	Unmodified	1325.7303	0.73031409	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	41.139	40.301	2;3	4.1526E-05	35254	160511_QHF_FH_JSI11i_3	105.17	79.734			1.022	0.98157	13.318	9	3	Median	1.2863	1.0718	16.271	2	0	Median	0.69594	0.81725	14.971	3	2	Plateau	1.0058	0.94443	5.4552	2	0	Median	1.1183	1.1426	10.631	2	1	Median	1193500000	587230000	606270000	117920000	44548000	73373000	496020000	274340000	221680000	461590000	211980000	249610000	117970000	56364000	61610000	27728	5090	26256	173442;173443;173444;173445;173446;173447;173448;173449;173450	234710;234711;234712;234713;234714;234715;234716;234717;234718	234711			9	
KLEPILK	2	Unmodified	839.54804	0.54803961	3986	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	27.725	27.725	3	0.010314	23535	160511_QHF_FH_JSI10i_3	44.447	17.845			0.93735	0.87561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93735	0.87561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21758000	11327000	10431000	0	0	0	0	0	0	21758000	11327000	10431000	0	0	0	27729	3986	26257	173451;173452;173453	234719;234720;234721	234720			3	
KLEPISNDDLLVVEK	2	Unmodified	1710.9404	0.94036644	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	4	2	66.471	66.038	2;3	1.875E-05	57262	160511_QHF_FH_JSI12i_3	113.69	89.886			1.0375	1.0823	13.398	8	2	Median	1.0447	0.88059	NaN	1	0	Median	0.94457	1.1468	NaN	1	1	Median	1.1922	1.1417	13.948	4	1	Median	1.0126	1.0356	3.4399	2	0	Median	932590000	512030000	420560000	72461000	37234000	35227000	23164000	14921000	8243000	371990000	205840000	166150000	464970000	254040000	210940000	27730	5161	26258	173454;173455;173456;173457;173458;173459;173460;173461	234722;234723;234724;234725;234726;234727;234728;234729;234730;234731	234731			9	
KLEPIWNEVGLEMK	2	Unmodified	1684.8858	0.88582845	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	82.4	82.038	2;3	8.1122E-05	71079	160511_QHF_FH_JSI12i_3	63.682	58.473			0.81065	0.82228	13.74	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.5126	0.63076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78108	0.7783	9.1132	2	0	Median	137950000	69530000	68419000	0	0	0	9288200	4773300	4514900	0	0	0	128660000	64757000	63904000	27731	4142	26259	173462;173463;173464	234732;234733;234734;234735	234735			4	
KLEPLSQDEDQHADLTQSR	1	Unmodified	2209.0611	0.061103292	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							2	3	2		34.942	34.209	3;4	8.7375E-10	29723	160511_QHF_FH_JSI11i_3	118.37	104.11			0.87101	0.80516	37.202	6	2	Median	2.2091	1.9297	NaN	1	1	Median	0.62328	0.76286	19.312	3	1	Median	0.87101	0.80516	4.0554	2	0	Median	NaN	NaN	NaN	0	0	Median	319690000	159120000	160570000	36938000	7699400	29239000	100620000	52635000	47987000	182130000	98784000	83345000	0	0	0	27732	1654	26260	173465;173466;173467;173468;173469;173470;173471	234736;234737;234738;234739;234740;234741;234742;234743;234744;234745;234746;234747	234737			12	
KLEPVVFEK	2	Unmodified	1087.6277	0.6277465	3753	Q8WU79	SMAP2	Stromal membrane-associated protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.841	40.63	2	0.018268	34684	160511_QHF_FH_JSI12i_3	42.802	31.439			0.67872	0.67911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67872	0.67911	NaN	1	0	Median	104950000	62104000	42843000	0	0	0	0	0	0	0	0	0	104950000	62104000	42843000	27733	3753	26261	173472	234748	234748			1	
KLEQCNTELK	2	Unmodified	1261.6336	0.63363651	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	12.646	12.728	2;3	0.00012143	9755	160511_QHF_FH_JSI12i_3	72.652	47.266			1.1877	1.2162	14.496	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1877	1.2162	14.496	2	0	Median	126470000	61472000	64993000	0	0	0	0	0	0	0	0	0	126470000	61472000	64993000	27734	5479	26262	173473;173474	234749;234750;234751	234751			3	
KLEQLDWTVGLR	1	Unmodified	1456.8038	0.80381338	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		68.47	68.47	3	0.0055694	61071	160511_QHF_FH_JSI11i_3	48.532	40.808			0.52089	0.48295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52089	0.48295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	99689000	74589000	25100000	0	0	0	0	0	0	99689000	74589000	25100000	0	0	0	27735	1892	26263	173475	234752	234752			1	
KLEQLYNR	1	Unmodified	1062.5822	0.58219329	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			19.785	18.62	3	0.0055904	14923	160511_QHF_FH_JSI9i_3	52.482	35.942			0.86937	0.85108	6.6693	2	2	Median	1.0682	0.89218	NaN	1	1	Median	0.70755	0.81187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176300000	82362000	93943000	101600000	49468000	52129000	74708000	32894000	41814000	0	0	0	0	0	0	27736	4091	26264	173476;173477;173478	234753;234754;234755	234755			3	
KLERPPETPTVDPTVK	2	Unmodified	1805.9887	0.98871362	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		37.475	36.493	3	0.0030678	30579	160511_QHF_FH_JSI10i_3	62.055	51.239			0.78796	0.73294	44.803	3	2	Median	1.7592	1.4261	NaN	1	0	Median	0.51628	0.60812	NaN	1	1	Median	0.78796	0.73294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	332330000	170970000	161370000	132810000	55942000	76868000	96172000	63120000	33052000	103350000	51907000	51446000	0	0	0	27737	2578	26265	173479;173480;173481	234756;234757;234758	234757			3	
KLESFYIQK	2	Unmodified	1154.6336	0.63356015	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.86		4	10						5	5	6	5	3	42.035	38.885	2;3	1.0351E-05	33854	160511_QHF_FH_JSI11i_3	111.46	58.973			0.81692	0.78321	49.176	19	8	Median	0.81639	0.66331	52.502	5	3	Median	0.78216	0.94363	74.545	6	4	Median	0.81692	0.78321	6.4356	5	1	Median	0.89408	0.9185	31.395	3	0	Plateau	2977300000	1552300000	1425000000	265670000	135480000	130200000	795830000	363000000	432840000	685100000	392880000	292210000	1230700000	660950000	569710000	27738	874	26266	173482;173483;173484;173485;173486;173487;173488;173489;173490;173491;173492;173493;173494;173495;173496;173497;173498;173499;173500	234759;234760;234761;234762;234763;234764;234765;234766;234767;234768;234769;234770;234771;234772;234773;234774;234775;234776;234777;234778;234779;234780;234781;234782;234783	234760			23	
KLESPPPSTNPFLEDEPTPEMEELATEK	2	Unmodified	3154.4904	0.49039248	2978	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.756	83.756	3	1.55E-05	74744	160511_QHF_FH_JSI11i_3	45.07	33.863			0.73179	0.69344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73179	0.69344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23939000	15174000	8765700	0	0	0	0	0	0	23939000	15174000	8765700	0	0	0	27739	2978	26267	173501	234784;234785;234786	234784			3	
KLESTESR	1	Unmodified	948.48762	0.4876242	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	5.71		3	4					3		2	2	4	2	4.573	1.6504	2;3	0.00066065	2242	160511_QHF_FH_JSI11i_2	101.25	42.471			0.93714	0.90472	52.289	10	3	Median	1.8717	1.5955	6.3407	2	0	Median	0.61538	0.75724	8.3329	2	0	Median	0.85523	0.83908	8.2509	4	1	Median	2.6196	2.6322	35.254	2	2	Median	3144600000	1755700000	1388900000	42589000	14835000	27754000	903010000	538950000	364060000	2104500000	1171100000	933410000	94537000	30833000	63704000	27740	791	26268	173502;173503;173504;173505;173506;173507;173508;173509;173510;173511	234787;234788;234789;234790;234791;234792;234793;234794;234795;234796;234797;234798;234799	234793			12	
KLESVAEEHEILTK	2	Unmodified	1624.8672	0.8672015	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	35.609	35.566	3	0.0057584	31228	160511_QHF_FH_JSI11i_3	48.823	39.535			1.236	1.1802	62.911	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78995	0.73317	82.929	2	1	Median	0.50089	0.49408	NaN	1	0	Median	152080000	91761000	60318000	0	0	0	0	0	0	108770000	62203000	46563000	43313000	29558000	13755000	27741	3706	26269	173512;173513;173514	234800;234801;234802	234800			1	
KLESVFFHSLSGSK	2	Unmodified	1564.8249	0.82494275	3637	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	55.182	54.29	3	0.00076386	45881	160511_QHF_FH_JSI12i_3	45.14	38.524			0.64669	0.70347	45.459	2	1	Median	NaN	NaN	NaN	0	0	Median	0.43616	0.51008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95885	0.97016	NaN	1	0	Median	88239000	50472000	37766000	0	0	0	25421000	18980000	6440200	0	0	0	62818000	31492000	31326000	27742	3637	26270	173515;173516	234803;234804	234804			2	
KLETAVNLAWTAGNSNTR	1	Unmodified	1945.0017	0.0017379196	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.74		2	7						3	4	4	2	2	60.572	57.4	2;3	3.2463E-07	47067	160511_QHF_FH_JSI9i_3	100.45	98.117			0.94274	0.94172	12.696	11	2	Median	1.1321	0.95122	12.006	4	1	Median	0.79078	0.9458	6.8607	4	0	Median	1.1228	1.0825	27.33	2	1	Median	0.91321	0.94172	NaN	1	0	Median	994430000	518680000	475750000	449860000	224870000	224990000	403510000	227690000	175820000	103840000	47740000	56100000	37214000	18375000	18840000	27743	1195	26271	173517;173518;173519;173520;173521;173522;173523;173524;173525;173526;173527;173528	234805;234806;234807;234808;234809;234810;234811;234812;234813;234814;234815;234816;234817;234818;234819;234820;234821;234822;234823;234824;234825	234812			21	
KLETEETVPETDVETK	2	Unmodified	1846.9048	0.9047688	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		35.871	35.448	3	0.0012102	30190	160511_QHF_FH_JSI11i_2	51.147	34.078			1.1264	1.1344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1264	1.1344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24677000	12598000	12079000	0	0	0	0	0	0	24677000	12598000	12079000	0	0	0	27744	2213	26272	173529	234826	234826			1	
KLETNPDIKPSNVEPMEK	3	Unmodified	2068.0511	0.051055878	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		39.653	39.653	3;4	8.6019E-05	34859	160511_QHF_FH_JSI11i_3	66.325	50.019			0.70437	0.65532	22.882	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70437	0.65532	22.882	2	0	Median	NaN	NaN	NaN	0	0	Median	116870000	66643000	50230000	0	0	0	0	0	0	116870000	66643000	50230000	0	0	0	27745	4481	26273	173530;173531	234827;234828;234829;234830;234831	234831			5	
KLEVEANNAFDQYR	1	Unmodified	1695.8216	0.82164829	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	47.48	47.192	2;3	3.1195E-07	40297	160511_QHF_FH_JSI12i_3	115.06	104.59			0.87606	0.8528	14.166	5	0	Median	NaN	NaN	NaN	0	0	Median	0.69575	0.8528	NaN	1	0	Median	0.89272	0.83371	3.4138	2	0	Median	0.9007	0.9174	26.353	2	0	Median	833070000	384360000	448710000	0	0	0	34925000	15394000	19531000	500490000	212690000	287800000	297660000	156280000	141380000	27746	1607	26274	173532;173533;173534;173535;173536	234832;234833;234834;234835;234836;234837;234838;234839	234839			8	
KLEVEYEQK	2	Unmodified	1164.6027	0.60265396	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	3	4	21.517	21.147	2;3	7.1551E-05	17132	160511_QHF_FH_JSI12i_3	96.342	69.088			0.74399	0.90879	41.316	9	4	Median	0.63458	0.53863	NaN	1	0	Median	0.74399	0.90879	NaN	1	0	Median	1.3146	1.2483	35.179	3	1	Plateau	0.74683	0.77992	54.477	4	3	Median	548630000	275580000	273040000	35559000	18572000	16986000	39133000	25995000	13139000	176910000	92572000	84340000	297020000	138450000	158580000	27747	5543	26275	173537;173538;173539;173540;173541;173542;173543;173544;173545	234840;234841;234842;234843;234844;234845;234846;234847;234848;234849;234850;234851;234852	234850			13	
KLEVNEAELLR	1	Unmodified	1312.7351	0.73506511	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	3	2	50.696	50.203	2;3	1.8581E-18	44187	160511_QHF_FH_JSI11i_3	134.13	91.412			0.98482	1.02	8.2699	8	2	Median	0.9755	0.84959	NaN	1	1	Median	0.82982	1.02	11.8	2	1	Median	1.0478	1.0325	2.4595	3	0	Plateau	0.98482	1.0168	1.6809	2	0	Median	2132200000	918070000	1214200000	123820000	79065000	44760000	346380000	188690000	157680000	800780000	299080000	501700000	861250000	351240000	510020000	27748	3085	26276	173546;173547;173548;173549;173550;173551;173552;173553;173554	234853;234854;234855;234856;234857;234858;234859;234860;234861;234862;234863;234864;234865;234866;234867	234853			15	
KLFNPPEESEK	2	Acetyl (K)	1358.6718	0.67179615	4961	Q9NRP2	CMC2	COX assembly mitochondrial protein 2 homolog	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.7	0.471						1	2				1		2	52.557	42.047	2	0.0034999	23463	160513_QHF_FH_JSI10Kac_4	87.913	70.477			0.8957	1.0113	31.508	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68924	0.8093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.164	1.2636	NaN	1	0	Median	10449000	6334600	4114700	0	0	0	6085000	3877800	2207200	0	0	0	4364300	2456800	1907500	27749	4961	26277	173555;173556;173557	234868;234869;234870;234871	234868	3279		4	
KLFVQDLATR	1	Acetyl (K)	1231.6925	0.69247202	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.885	62.119	2	0.0083339	33184	160513_QHF_FH_JSI11Kac_5	73.985	13.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14316000	14316000	0	0	0	0	0	0	0	14316000	14316000	0	0	0	0	27750	1400	26278	173558	234872	234872	1361		1	
KLGAGEGGEASVSPEK	2	Unmodified	1514.7577	0.75765105	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	17.709	17.729	2;3	0.0087093	14354	160511_QHF_FH_JSI12i_3	45.618	35.264			0.91851	0.90303	6.5347	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92561	0.86225	NaN	1	1	Median	0.91146	0.94574	NaN	1	1	Median	51094000	19871000	31223000	0	0	0	0	0	0	28850000	8274300	20575000	22244000	11597000	10647000	27751	2409	26279	173559;173560	234873;234874	234874			2	
KLGALTAEEIALK	2	Unmodified	1355.8024	0.8024164	2449	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			6							1		3	2	57.576	57.449	2;3	9.0079E-06	50905	160511_QHF_FH_JSI11i_3	82.069	65.296			0.75766	0.72897	10.723	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84777	0.78639	NaN	1	1	Median	0.67712	0.67574	NaN	1	1	Median	148170000	64314000	83859000	0	0	0	0	0	0	43734000	22161000	21572000	104440000	42152000	62287000	27752	2449	26280	173561;173562;173563;173564;173565;173566	234875;234876;234877;234878;234879;234880	234877			6	
KLGDTYPSISNAR	1	Unmodified	1420.731	0.73104237	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			34.363	33.065	3	2.0338E-05	27070	160511_QHF_FH_JSI9i_3	76.357	60.417			1.1526	1.2995	62.78	3	2	Median	1.8216	1.5099	87.935	2	1	Median	1.1526	1.2995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	448480000	180090000	268390000	305540000	111580000	193960000	142940000	68505000	74433000	0	0	0	0	0	0	27753	4715	26281	173567;173568;173569;173570	234881;234882;234883;234884;234885	234884			5	
KLGEFFQTK	2	Unmodified	1096.5917	0.59169534	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	40.868	39.816	2;3	0.00014374	32569	160511_QHF_FH_JSI9i_3	90.108	59.035			0.70866	0.66003	44.939	6	3	Median	0.52002	0.41772	49.891	2	1	Median	0.75927	0.88423	9.9664	2	1	Median	0.43741	0.4068	NaN	1	0	Median	0.71181	0.73287	NaN	1	1	Median	1806800000	1280700000	526100000	945250000	717250000	228000000	362560000	213630000	148930000	223480000	156180000	67298000	275460000	193600000	81865000	27754	2609	26282	173571;173572;173573;173574;173575;173576	234886;234887;234888;234889;234890;234891;234892;234893	234890			8	
KLGELTGTVK	2	Unmodified	1044.6179	0.61791009	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	25.179	24.509	2;3	0.0011098	19884	160511_QHF_FH_JSI9i_3	45.829	28.915			1.2073	1.05	43.955	6	4	Median	0.97834	0.78766	13.214	2	0	Median	1.9516	2.2165	NaN	1	1	Median	1.3377	1.2749	NaN	1	1	Median	1.1936	1.1898	46.843	2	2	Median	931920000	423470000	508460000	290690000	124550000	166140000	146810000	71678000	75131000	127040000	52724000	74313000	367390000	174520000	192870000	27755	346	26283	173577;173578;173579;173580;173581;173582	234894;234895;234896;234897;234898;234899;234900	234898			7	
KLGEMWNNLNDSEK	2	Unmodified	1676.7828	0.78281994	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							2	2	4		47.78	46.986	2;3	7.6639E-07	41327	160511_QHF_FH_JSI11i_3	120.53	107.9			0.68075	0.64549	39.884	8	6	Median	0.73649	0.60498	21.988	2	1	Median	0.62035	0.71478	27.239	2	1	Median	0.72097	0.67117	56.661	4	4	Median	NaN	NaN	NaN	0	0	Median	514640000	296170000	218470000	69179000	39325000	29854000	111230000	62331000	48895000	334230000	194520000	139720000	0	0	0	27756	278	26284	173583;173584;173585;173586;173587;173588;173589;173590	234901;234902;234903;234904;234905;234906;234907	234901			7	
KLGEMWNNTAADDK	2	Oxidation (M)	1607.725	0.72497071	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	25.112	24.362	3	7.3081E-05	20002	160511_QHF_FH_JSI10i_3	72.175	53.117			0.82848	0.72085	63.755	7	2	Median	1.5184	1.2309	85.796	2	0	Median	0.94325	1.1032	84.54	2	1	Median	1.1886	1.0954	88.873	2	1	Median	0.70278	0.72085	NaN	1	0	Median	638700000	287250000	351450000	205570000	76870000	128700000	161540000	68596000	92948000	159380000	81563000	77815000	112210000	60220000	51985000	27757	928	26285	173591;173592;173593;173594;173595;173596;173597;173598	234908;234909;234910;234911;234912;234913;234914;234915	234911		505	8	
KLGEMWNNTAADDK	2	Unmodified	1591.7301	0.73005609	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							5	4	2	2	36.17	35.187	2;3	5.7646E-10	28641	160511_QHF_FH_JSI9i_3	150.12	124.9			0.84236	0.92926	34.567	12	0	Median	0.97422	0.80625	27.085	4	0	Median	0.73932	0.87783	12.344	4	0	Median	0.98404	0.92926	1.0186	2	0	Median	0.49884	0.53661	80.737	2	0	Median	2800600000	1487100000	1313600000	779750000	372890000	406850000	819790000	455670000	364120000	1100600000	594050000	506510000	100540000	64433000	36107000	27758	928	26285	173599;173600;173601;173602;173603;173604;173605;173606;173607;173608;173609;173610;173611	234916;234917;234918;234919;234920;234921;234922;234923;234924;234925;234926;234927;234928;234929;234930;234931;234932;234933;234934;234935;234936;234937;234938;234939;234940;234941;234942;234943	234932			28	
KLGEMWNNTAADDKQPYEK	3	Unmodified	2237.0423	0.042282105	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			14							6	5	3		43.231	42.002	3;4	2.4707E-10	36014	160511_QHF_FH_JSI11i_3	125.23	109.28			0.75781	0.71555	30.124	14	6	Median	0.83403	0.688	25.918	6	3	Median	0.62146	0.7211	24.511	5	2	Median	1.0788	1.0106	53.042	3	1	Median	NaN	NaN	NaN	0	0	Median	796690000	416370000	380330000	207800000	117260000	90547000	190920000	111000000	79921000	397970000	188110000	209860000	0	0	0	27759	928	26286	173612;173613;173614;173615;173616;173617;173618;173619;173620;173621;173622;173623;173624;173625	234944;234945;234946;234947;234948;234949;234950;234951;234952;234953;234954;234955;234956;234957;234958;234959;234960;234961;234962	234949			19	
KLGEMWSEQSAK	2	Unmodified	1392.6708	0.6707503	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	3.27		1	13						1	3	3	7	2	33.04	31.984	2;3	5.6417E-07	27078	160511_QHF_FH_JSI10i_3	125.54	118.18			0.64694	0.75938	72.943	15	5	Median	1.017	0.84157	40.386	3	1	Median	0.73115	0.83597	16.361	3	0	Median	0.54469	0.52475	85.155	7	4	Median	0.38382	0.38687	17.874	2	0	Median	2356700000	1411100000	945570000	452900000	194640000	258270000	765020000	463150000	301860000	936520000	606110000	330410000	202220000	147190000	55033000	27760	1280	26287	173626;173627;173628;173629;173630;173631;173632;173633;173634;173635;173636;173637;173638;173639;173640	234963;234964;234965;234966;234967;234968;234969;234970;234971;234972;234973;234974;234975;234976;234977;234978;234979;234980;234981;234982;234983;234984;234985;234986;234987;234988	234972			25	
KLGEMWSEQSAK	2	Oxidation (M)	1408.6657	0.66566492	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	22.191	21.558	3	0.0026232	17394	160511_QHF_FH_JSI9i_3	50.46	37.479			0.89606	0.8597	42.321	4	2	Median	0.82534	0.66048	NaN	1	0	Median	0.97284	1.119	NaN	1	1	Median	0.9005	0.83701	63.056	2	1	Median	NaN	NaN	NaN	0	0	Median	246220000	128370000	117850000	93207000	42953000	50253000	51131000	28936000	22195000	101880000	56483000	45402000	0	0	0	27761	1280	26287	173641;173642;173643;173644;173645;173646	234989;234990;234991;234992;234993	234991		912	5	
KLGEWVGLCK	2	Unmodified	1188.6325	0.6325143	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	49.893	48.962	2;3	0.00018161	40331	160511_QHF_FH_JSI9i_3	100.48	77.737			1.0685	1.081	38.47	9	6	Median	2.0206	1.6102	20.099	2	2	Median	0.80453	0.91639	33.019	3	3	Median	0.68691	0.64513	0.40402	2	0	Median	1.232	1.2392	19.315	2	1	Median	6739900000	3453500000	3286400000	758220000	266300000	491920000	1527000000	736730000	790320000	2269300000	1409200000	860050000	2185400000	1041300000	1144100000	27762	1258	26288	173647;173648;173649;173650;173651;173652;173653;173654;173655	234994;234995;234996;234997;234998;234999;235000;235001;235002;235003;235004;235005;235006;235007;235008	235005			15	
KLGGDPEK	2	Unmodified	842.44978	0.44978213	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	1	2	5.9028	5.6081	2;3	0.013855	3407	160511_QHF_FH_JSI12i_3	39.022	20.291			1.1077	1.0386	17.508	6	1	Median	1.3018	1.0633	4.8431	2	0	Median	0.71603	0.86878	26.772	2	0	Median	1.2883	1.1966	NaN	1	1	Median	0.99551	1.0059	NaN	1	0	Median	784250000	357160000	427090000	93485000	44411000	49073000	174100000	102580000	71525000	385200000	153760000	231440000	131460000	56406000	75052000	27763	1194	26289	173656;173657;173658;173659;173660;173661;173662	235009;235010;235011;235012;235013	235013			5	
KLGGSLADSYLDEGFLLDK	2	Unmodified	2040.0415	0.041537049	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							4	3	2	2	90.647	90.133	2;3	2.5466E-13	80390	160511_QHF_FH_JSI11i_3	177.74	162.35			0.87508	0.86005	22.052	11	0	Median	1.2423	1.0421	12.865	4	0	Median	0.6191	0.73308	18.51	3	0	Plateau	0.9343	0.8696	9.9661	2	0	Median	0.60698	0.60544	10.14	2	0	Median	2500900000	1354200000	1146700000	322510000	157330000	165180000	533250000	306740000	226510000	934990000	480910000	454070000	710170000	409210000	300970000	27764	2090	26290	173663;173664;173665;173666;173667;173668;173669;173670;173671;173672;173673	235014;235015;235016;235017;235018;235019;235020;235021;235022;235023;235024;235025;235026;235027;235028;235029;235030;235031;235032;235033;235034;235035;235036;235037;235038;235039	235018			26	
KLGGSQEDQIK	2	Unmodified	1201.6303	0.63026569	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	2	2	11.085	10.908	2;3	0.00010074	8516	160511_QHF_FH_JSI11i_3	86.624	30.061			1.1818	1.1564	86.373	6	2	Median	3.0576	2.5894	NaN	1	1	Median	0.19682	0.23224	NaN	1	1	Median	0.88134	0.83253	0.56474	2	0	Median	1.7196	1.7454	12.302	2	0	Median	392160000	169340000	222820000	21969000	5705700	16263000	26300000	22130000	4170400	155160000	72208000	82951000	188730000	69294000	119430000	27765	1471	26291	173674;173675;173676;173677;173678;173679	235040;235041;235042;235043;235044;235045;235046;235047	235040			8	
KLGGTIDDCELVEGLVLTQK	2	Unmodified	2187.1457	0.14568454	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		87.29	87.29	3	1.0059E-05	77924	160511_QHF_FH_JSI11i_3	70.453	61.521			1.0739	1.0095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0739	1.0095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66117000	35929000	30188000	0	0	0	0	0	0	66117000	35929000	30188000	0	0	0	27766	1722	26292	173680;173681	235048;235049;235050	235048			3	
KLGIQVK	2	Unmodified	784.51707	0.51707383	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	3	0			3							1		1	1	18.656	18.264	2	0.036127	14622	160511_QHF_FH_JSI12i_3	49.59	6.5237			1.1493	1.1542	20.281	3	0	Plateau	1.2251	0.98322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5649	1.471	NaN	1	0	Median	1.1493	1.1542	NaN	1	0	Median	752520000	320320000	432200000	230530000	88758000	141780000	0	0	0	161480000	82195000	79288000	360500000	149360000	211140000	27767	1693	26293	173682;173683;173684	235051	235051			1	
KLGLGTAYIHGMK	2	Unmodified	1387.7646	0.7645911	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			9							2	4	2	1	44.921	43.846	3;4	0.00039244	36953	160511_QHF_FH_JSI10i_3	71.558	58.762			1.0929	1.0623	37.879	9	2	Median	1.447	1.1824	17.702	2	0	Median	1.0211	1.1579	26.307	4	2	Median	1.1645	1.0558	7.4918	2	0	Median	0.40029	0.41458	NaN	1	0	Median	400940000	179020000	221910000	96640000	36279000	60361000	200400000	95882000	104520000	89184000	35424000	53759000	14709000	11437000	3272400	27768	445	26294	173685;173686;173687;173688;173689;173690;173691;173692;173693	235052;235053;235054;235055;235056;235057;235058	235055			4	
KLGLLVFPYTHQNWEVQYSR	1	Unmodified	2477.2856	0.28556434	640	O95070	YIF1A	Protein YIF1A	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			80.665	75.069	4	7.6317E-19	41235	160513_QHF_FH_JSI10Kac_6	136.58	128.87			0.82607	0.99147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82607	0.99147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142500000	88039000	54460000	0	0	0	142500000	88039000	54460000	0	0	0	0	0	0	27769	640	26295	173694	235059	235059			1	
KLGLVFDDVVGIVEIINSK	2	Unmodified	2057.1772	0.17724267	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	1	2	101.79	98.732	3	6.1751E-10	90577	160511_QHF_FH_JSI12i_3	121.26	111.97			0.67461	0.72401	26.652	5	2	Median	1.0605	0.94229	NaN	1	0	Median	0.55152	0.65488	NaN	1	0	Median	1.2445	1.163	NaN	1	1	Median	0.63501	0.66838	11.307	2	1	Median	306580000	163990000	142590000	3444600	1285300	2159300	163280000	87919000	75361000	31343000	13647000	17696000	108510000	61137000	47375000	27770	2169	26296	173695;173696;173697;173698;173699	235060;235061;235062;235063;235064;235065	235062			6	
KLGNNCVFAPADVTSEK	2	Unmodified	1848.904	0.90399771	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							1	2	2	1	47.509	46.678	2;3	2.897E-05	41093	160511_QHF_FH_JSI11i_3	78.441	73.013			0.81577	0.86582	16.073	6	0	Median	1.3008	1.0529	NaN	1	0	Median	0.84753	0.98965	6.5204	2	0	Median	0.80896	0.77145	3.9388	2	0	Median	0.72119	0.74216	NaN	1	0	Median	1101600000	531130000	570480000	180540000	80268000	100270000	337330000	163610000	173720000	524100000	255120000	268980000	59646000	32130000	27516000	27771	4304	26297	173700;173701;173702;173703;173704;173705	235066;235067;235068;235069;235070;235071;235072;235073;235074	235066			9	
KLGPISPPQPPSVSAWNK	2	Unmodified	1902.0363	0.036332512	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			68.583	67.103	3	0.016967	56248	160511_QHF_FH_JSI10i_3	35.176	25.254			0.71476	0.83085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71476	0.83085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10494000	6896500	3597900	0	0	0	10494000	6896500	3597900	0	0	0	0	0	0	27772	5646	26298	173706	235075	235075			1	
KLGQSIESSYSSIQK	2	Unmodified	1653.8574	0.85736509	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			38.716	37.233	3	1.3285E-05	31074	160511_QHF_FH_JSI10i_3	94.487	81.932			0.75531	0.73122	6.848	2	0	Median	0.83341	0.69665	NaN	1	0	Median	0.68452	0.7675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73005000	39154000	33851000	33594000	16930000	16664000	39411000	22224000	17187000	0	0	0	0	0	0	27773	5353	26299	173707;173708	235076;235077	235076			2	
KLGSSLDWDR	1	Unmodified	1175.5935	0.59348625	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		36.862	36.025	2;3	0.00092636	30143	160511_QHF_FH_JSI10i_3	45.879	36.224			0.85689	0.90921	28.656	7	0	Median	1.1501	0.92698	2.7372	2	0	Median	0.86794	1.0042	6.8604	2	0	Median	0.79848	0.74308	31.647	3	0	Median	NaN	NaN	NaN	0	0	Median	448780000	264760000	184020000	90027000	43524000	46503000	99149000	59173000	39976000	259610000	162070000	97541000	0	0	0	27774	1283	26300	173709;173710;173711;173712;173713;173714;173715	235078;235079;235080;235081;235082;235083;235084;235085	235082			8	
KLGVENCYFPMFVSQSALEK	2	Unmodified	2346.1388	0.13882503	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	89.424	89.379	3	1.0357E-05	79725	160511_QHF_FH_JSI11i_3	70.315	54.59			1.0156	0.98977	26.294	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8858	0.82184	NaN	1	0	Median	1.1645	1.192	NaN	1	0	Median	246720000	120550000	126170000	0	0	0	0	0	0	134950000	72513000	62435000	111770000	48034000	63733000	27775	878	26301	173716;173717;173718	235086;235087;235088	235086			3	
KLGVENCYFPMFVSQSALEK	2	Oxidation (M)	2362.1337	0.13373965	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			82.038	80.738	3	0.0022814	67704	160511_QHF_FH_JSI10i_3	44.788	29.366			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27776	878	26301	173719	235089	235089		430	1	
KLGVNNISGIEEVNMFTNQGTVIHFNNPK	2	Unmodified	3213.6241	0.62408146	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	91.173	90.505	3;4	2.7883E-33	79699	160511_QHF_FH_JSI11i_3	146.34	144.26			0.77928	0.8193	65.375	8	2	Median	1.2084	0.99757	21.33	2	0	Median	0.64495	0.73212	12.528	3	0	Median	0.77441	0.73841	12.736	2	1	Median	4.7626	4.7448	NaN	1	1	Median	1067400000	666450000	400990000	182170000	86504000	95664000	307790000	182260000	125530000	516380000	378410000	137970000	61107000	19275000	41833000	27777	1172	26302	173720;173721;173722;173723;173724;173725;173726;173727	235090;235091;235092;235093;235094;235095;235096;235097;235098;235099;235100;235101;235102;235103;235104;235105;235106;235107	235090			18	
KLGVNNISGIEEVNMFTNQGTVIHFNNPK	2	Oxidation (M)	3229.619	0.61899608	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		84.635	83.65	4	6.8025E-20	68934	160511_QHF_FH_JSI9i_3	111.65	109.54			0.88376	0.84886	23.593	5	2	Median	1.1168	0.9086	9.6178	2	1	Median	0.63627	0.72633	40.36	2	1	Median	0.88376	0.83023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125030000	67945000	57082000	45612000	19727000	25884000	37929000	20296000	17633000	41486000	27921000	13564000	0	0	0	27778	1172	26302	173728;173729;173730;173731;173732	235108;235109;235110;235111;235112;235113	235111		795	5	
KLHQDEK	2	Acetyl (K)	938.48214	0.48214489	2498	Q14141	SEPT6	Septin-6	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								3			1	2		5.0014	-4.5117	2;3	0.0073583	1484	160513_QHF_FH_JSI11Kac_5	111.17	17.053			0.31971	0.3454	16.255	2	0	Median	NaN	NaN	NaN	0	0	Median	0.32716	0.38748	NaN	1	0	Median	0.31243	0.3079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49388000	41009000	8378900	0	0	0	5626600	3891300	1735300	43762000	37118000	6643600	0	0	0	27779	2498	26303	173733;173734;173735	235114;235115	235115	2501		2	
KLIAEGPGETVLVAEEEAAR	1	Unmodified	2081.1004	0.10044891	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		67.996	67.26	3	1.1959E-11	56432	160511_QHF_FH_JSI10i_3	135.04	131.08			0.89067	0.91524	10.305	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74432	0.85092	NaN	1	0	Median	1.0658	0.98442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	139050000	72070000	66983000	0	0	0	48858000	24043000	24815000	90195000	48027000	42168000	0	0	0	27780	4811	26304	173736;173737	235116;235117;235118;235119	235118			4	
KLIELQAGK	2	Unmodified	998.61243	0.61243078	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	28.359	27.594	2;3	0.0031158	22456	160511_QHF_FH_JSI9i_3	55.461	31.24			1.0832	1.1036	52.121	9	4	Median	1.4971	1.1938	83.98	3	3	Median	0.67338	0.7595	74.454	2	1	Median	1.1329	1.0545	10.725	2	0	Median	1.0823	1.0984	0.67411	2	0	Median	1586000000	896760000	689280000	489860000	258630000	231230000	267310000	158300000	109010000	416530000	215550000	200980000	412340000	264280000	148060000	27781	1050	26305	173738;173739;173740;173741;173742;173743;173744;173745;173746	235120;235121;235122;235123;235124;235125;235126	235122			7	
KLIELQAGKK	3	Unmodified	1126.7074	0.7073938	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	20.717	20.102	3;4	0.0001449	16555	160511_QHF_FH_JSI11i_3	94.616	78.363			0.49736	0.46511	16.236	4	4	Median	0.60324	0.49168	NaN	1	1	Median	0.3858	0.43997	NaN	1	1	Median	0.61891	0.5935	NaN	1	1	Median	0.41007	0.40864	NaN	1	1	Median	1258600000	676380000	582220000	97664000	59748000	37916000	495700000	285850000	209840000	308750000	143320000	165430000	356500000	187460000	169040000	27782	1050	26306	173747;173748;173749;173750;173751;173752	235127;235128;235129;235130;235131;235132	235128			6	
KLIEYYK	2	Unmodified	955.53787	0.53786886	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			26.715	25.391	3	0.0031209	20973	160511_QHF_FH_JSI10i_3	66.682	55.809			0.48078	0.46298	22.174	2	2	Median	0.47939	0.39579	NaN	1	1	Median	0.48217	0.54157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81523000	51822000	29701000	41161000	27386000	13775000	40362000	24436000	15926000	0	0	0	0	0	0	27783	1596	26307	173753;173754	235133;235134	235133			2	
KLIHLEIK	2	Unmodified	992.63825	0.6382516	2191;1453	Q02750;P36507	MAP2K1;MAP2K2	Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2	no	no	0	0	0	1				By MS/MS	3	0			1										1	34.41	34.3	3	0.019993	29171	160511_QHF_FH_JSI12i_3	37.549	18.571			1.0046	1.0112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.0112	NaN	1	1	Median	35946000	19429000	16517000	0	0	0	0	0	0	0	0	0	35946000	19429000	16517000	27784	2191;1453	26308	173755	235135	235135			1	
KLILDSAR	1	Unmodified	914.55492	0.5549159	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		22.216	21.373	2;3	0.00019876	17722	160511_QHF_FH_JSI10i_3	89.355	52.334			0.89541	1.799	44.448	6	0	Linear	1.8495	1.4752	0.21423	2	0	Median	0.47066	0.54831	5.4235	2	0	Median	0.89541	0.84688	2.2855	2	0	Median	NaN	NaN	NaN	0	0	Median	2444500000	1183000000	1261500000	1146000000	417700000	728270000	604350000	392240000	212110000	694140000	373070000	321070000	0	0	0	27785	1322	26309	173756;173757;173758;173759;173760;173761	235136;235137;235138;235139	235137			4	
KLILFFK	2	Unmodified	907.58951	0.5895105	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	73.815	65.361	3	0.017248	34403	160513_QHF_FH_JSI12Kac_6	47.067	28.336			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27786	513	26310	173762;173763	235140;235141	235140			2	
KLILGNYK	2	Unmodified	947.5804	0.58040237	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	30.211	29.284	2;3	0.00011234	24022	160511_QHF_FH_JSI9i_3	96.492	80.289			1.2667	1.3387	25.081	6	1	Median	1.8428	1.4932	53.706	2	1	Median	1.0916	1.2886	5.589	2	0	Median	1.5003	1.3956	NaN	1	0	Median	1.2922	1.3369	NaN	1	0	Median	724040000	323410000	400630000	245910000	93637000	152270000	190310000	97246000	93061000	103540000	38303000	65233000	184280000	94222000	90060000	27787	418	26311	173764;173765;173766;173767;173768;173769	235142;235143;235144;235145;235146;235147	235145			6	
KLILYFK	2	Unmodified	923.58443	0.58442512	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	3	1	2	63.054	53.854	3	0.0081942	44859	160511_QHF_FH_JSI10i_3	47.067	19.542			1.2765	1.1703	48.11	6	4	Median	1.208	1.0385	NaN	1	0	Median	0.91699	1.0571	56.513	2	2	Median	1.3488	1.3188	NaN	1	0	Median	1.0012	1.0904	89.359	2	2	Median	58337000	30626000	27711000	8923300	3982300	4941000	28026000	16143000	11883000	12305000	6243400	6061600	9082200	4257200	4824900	27788	5698	26312	173770;173771;173772;173773;173774;173775;173776	235148;235149;235150;235151;235152;235153;235154;235155;235156	235148			9	
KLINQEK	2	Unmodified	871.51272	0.51271674	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		6.4526	6.1128	3	0.0057161	4105	160511_QHF_FH_JSI10i_3	51.335	20.832			1.7841	0.87054	32.639	3	0	Plateau	1.873	1.5297	NaN	1	0	Median	0.75967	0.87054	NaN	1	0	Median	0.93464	0.86773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	349140000	179140000	170000000	121580000	47422000	74154000	111760000	64746000	47018000	115800000	66971000	48829000	0	0	0	27789	4681	26313	173777;173778;173779	235157	235157			1	
KLINQEKK	3	Acetyl (K)	1041.6182	0.61824444	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		15.285	6.0147	3	0.055244	5666	160513_QHF_FH_JSI11Kac_6	44.719	12.087			0.89172	0.86367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89172	0.86367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8464900	4801100	3663800	0	0	0	0	0	0	8464900	4801100	3663800	0	0	0	27790	4681	26314	173780	235158	235158			1	
KLIPNPNK	2	Unmodified	922.56	0.56000128	2085	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	13.881	13.3	2	0.0095029	10799	160511_QHF_FH_JSI10i_3	56.122	22.033			0.83648	0.95807	28.834	3	1	Median	1.447	1.1622	NaN	1	0	Median	0.83648	0.95807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65418	0.65915	NaN	1	1	Median	147200000	87097000	60099000	54400000	25200000	29200000	59583000	38836000	20747000	0	0	0	33213000	23061000	10152000	27791	2085	26315	173781;173782;173783	235159;235160;235161;235162;235163	235160			5	
KLIQESDQHLK	2	Unmodified	1337.7303	0.73031409	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	2	2	4	14.738	14.401	2;3	3.6868E-08	11499	160511_QHF_FH_JSI11i_3	105.03	87.366			0.90358	0.87665	60.692	8	3	Median	0.87345	0.71702	NaN	1	0	Median	1.0888	1.2511	24.996	2	0	Median	0.78075	0.72501	1.5602	2	0	Median	0.66629	0.66911	103.72	3	3	Plateau	824430000	438590000	385840000	67029000	33701000	33327000	155680000	78317000	77361000	289600000	153620000	135980000	312130000	172950000	139180000	27792	203	26316	173784;173785;173786;173787;173788;173789;173790;173791;173792	235164;235165;235166;235167;235168;235169;235170;235171;235172;235173;235174	235164			11	
KLISVETDIVVDHYK	2	Unmodified	1757.9564	0.95635086	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	58.949	58.687	3	9.9185E-05	50403	160511_QHF_FH_JSI12i_3	71.241	65.079			0.46217	0.47956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46217	0.47956	NaN	1	1	Median	59445000	43339000	16106000	0	0	0	0	0	0	0	0	0	59445000	43339000	16106000	27793	2328	26317	173793;173794	235175;235176	235176			2	
KLITDEFVK	2	Unmodified	1091.6227	0.62266112	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								2	3	2	45.905	45.474	2;3	4.3198E-05	39001	160511_QHF_FH_JSI12i_3	86.882	63.562			0.94576	0.99552	42.019	7	3	Median	NaN	NaN	NaN	0	0	Median	1.0479	1.2309	22.702	2	1	Median	1.0614	0.99552	67.805	3	2	Median	0.94378	0.97474	0.76542	2	0	Median	834930000	344740000	490180000	0	0	0	99429000	44817000	54612000	277240000	122290000	154950000	458260000	177630000	280620000	27794	5436	26318	173795;173796;173797;173798;173799;173800;173801	235177;235178;235179;235180;235181;235182;235183;235184;235185;235186;235187;235188	235186			12	
KLIYFQLHR	1	Unmodified	1216.7081	0.7080625	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	3	6	2	2	58.316	49.439	2;3;4	5.0166E-06	25232	160513_QHF_FH_JSI9Kac_6	109.11	105.58			0.89146	0.96627	27.807	12	1	Median	1.3055	1.1297	15.37	3	1	Plateau	0.8404	0.99336	34.123	5	0	Median	0.88037	0.85851	4.0728	2	0	Median	0.78805	0.83983	15.923	2	0	Median	1324900000	690050000	634870000	357080000	149520000	207570000	658860000	373860000	285010000	95949000	53063000	42886000	213030000	113620000	99408000	27795	2380	26319	173802;173803;173804;173805;173806;173807;173808;173809;173810;173811;173812;173813;173814	235189;235190;235191;235192;235193;235194;235195;235196;235197;235198;235199;235200;235201;235202;235203;235204;235205;235206;235207;235208;235209;235210;235211;235212	235195			23	
KLIYFQLHR	1	Acetyl (K)	1258.7186	0.71862719	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.103	62.684	3	0.003866	33957	160513_QHF_FH_JSI11Kac_6	88.136	76.13			0.31268	0.30638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31268	0.30638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15181000	12398000	2783100	0	0	0	0	0	0	15181000	12398000	2783100	0	0	0	27796	2380	26319	173815	235213	235213	2449		1	
KLLADQAEAR	1	Unmodified	1113.6142	0.6142217	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		14.662	14.197	2	0.04694	11256	160511_QHF_FH_JSI10i_3	36.424	21.274			1.7401	1.8134	131.37	2	0	Median	NaN	NaN	NaN	0	0	Median	3.9659	4.5914	NaN	1	0	Median	0.76347	0.71625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60069000	28614000	31456000	0	0	0	24345000	6731800	17614000	35724000	21882000	13842000	0	0	0	27797	2129	26320	173816;173817	235214	235214			1	
KLLELDSFLK	2	Unmodified	1204.7067	0.7067251	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	78.462	78.207	3	0.00060261	67911	160511_QHF_FH_JSI12i_3	66.595	58.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27798	1950	26321	173818	235215	235215			1	
KLLPDDPYEK	2	Unmodified	1216.634	0.63395408	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	38.275	37.725	2;3	0.00015375	31975	160511_QHF_FH_JSI12i_3	83.397	83.397			1.0795	1.0073	12.441	6	1	Median	1.1632	0.98011	NaN	1	0	Median	0.70514	0.85369	8.8103	2	1	Median	1.0933	1.0353	NaN	1	0	Median	1.09	1.1014	3.5724	2	0	Median	448660000	236000000	212670000	22347000	13338000	9008900	45394000	25581000	19813000	57063000	28374000	28689000	323860000	168700000	155150000	27799	2093	26322	173819;173820;173821;173822;173823;173824	235216;235217;235218;235219;235220	235219			5	
KLMDLLPK	2	Unmodified	956.57287	0.57287415	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	53.524	52.536	2;3	0.0043128	46194	160511_QHF_FH_JSI11i_3	48.283	39.42			1.2581	1.1309	28.272	5	2	Median	1.1818	0.96555	10.541	2	1	Median	1.602	1.8795	NaN	1	1	Median	1.2581	1.1309	NaN	1	0	Median	1.2538	1.3254	NaN	1	0	Median	186780000	76924000	109860000	79608000	33404000	46204000	25713000	9699400	16013000	34303000	12789000	21514000	47160000	21032000	26128000	27800	2746	26323	173825;173826;173827;173828;173829;173830	235221;235222;235223;235224;235225;235226;235227;235228;235229	235222			9	
KLMEIITVENPK	2	Oxidation (M)	1429.7851	0.78505177	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	1	1			By MS/MS		2	0		1										1		97.837	97.62	3	0.026185	85674	160511_QHF_FH_JSI11i_2	30.438	18.462			1.1313	1.1084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.1084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11192000	3689200	7502600	0	0	0	0	0	0	11192000	3689200	7502600	0	0	0	27801	3838	26324	173831	235230	235230			1	
KLMTTNEIQSNIYT	1	Unmodified	1654.8236	0.82362212	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	54.456	54.218	2	0.0048422	46520	160511_QHF_FH_JSI12i_3	69.349	62.965			1.8988	2.0398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8988	2.0398	NaN	1	1	Median	19338000	4662600	14676000	0	0	0	0	0	0	0	0	0	19338000	4662600	14676000	27802	696	26325	173832	235231	235231			1	
KLMVALAK	2	Unmodified	872.55174	0.55174478	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1		By MS/MS			3	0			1								1			33.646	32.246	3	0.012704	26909	160511_QHF_FH_JSI10i_3	40.002	24.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27803	870	26326	173833	235232	235232			1	
KLNCQVIGASVDSHFCHLAWVNTPK	2	Unmodified	2880.4163	0.41633729	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.146	73.146	4	0.0049578	65223	160511_QHF_FH_JSI11i_3	34.437	26.771			0.73237	0.69421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73237	0.69421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24388000	17330000	7058300	0	0	0	0	0	0	24388000	17330000	7058300	0	0	0	27804	2249	26327	173834	235233	235233			1	
KLNEISK	2	Unmodified	830.48617	0.48616764	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	3.94		1	8						1	2	5	1	2	8.9228	7.8828	2;3	0.0074567	5735	160511_QHF_FH_JSI12i_3	51.335	12.544			0.53627	0.60774	122.92	9	8	Median	1.6867	1.3692	NaN	1	0	Median	0.53627	0.60774	134.12	5	5	Median	0.21931	0.20582	NaN	1	1	Median	0.90538	0.90304	164.75	2	2	Median	6233800000	3167500000	3066300000	375790000	115870000	259920000	2035200000	966780000	1068400000	862250000	557090000	305160000	2960600000	1527800000	1432800000	27805	1130	26328	173835;173836;173837;173838;173839;173840;173841;173842;173843;173844	235234;235235;235236;235237;235238;235239;235240;235241;235242;235243	235242			10	
KLNELESDLTFK	2	Unmodified	1435.7559	0.75586013	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			6									4	2	56.169	56.107	2;3	6.7426E-07	48326	160511_QHF_FH_JSI12i_3	110.08	71.991			2.3184	2.2443	61.157	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5894	2.4686	73.206	3	3	Plateau	2.0757	2.0769	NaN	1	1	Median	212690000	80890000	131800000	0	0	0	0	0	0	120920000	47310000	73611000	91770000	33579000	58190000	27806	3111	26329	173845;173846;173847;173848;173849;173850	235244;235245;235246;235247;235248;235249	235249			6	
KLNEQVTQEQPLK	2	Unmodified	1553.8413	0.8413211	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	27.091	27.078	3	0.00011191	23150	160511_QHF_FH_JSI11i_3	89.663	81.749			0.82069	0.83565	32.523	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3461	1.2546	31.853	2	2	Median	0.82069	0.83565	NaN	1	1	Median	92970000	56881000	36090000	0	0	0	0	0	0	59457000	32651000	26806000	33514000	24230000	9283300	27807	2564	26330	173851;173852;173853	235250;235251;235252;235253;235254	235250			5	
KLNIGGK	2	Unmodified	728.45447	0.45447358	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	10.987	10.57	2	0.058159	8265	160511_QHF_FH_JSI10i_3	41.502	16.504			0.65037	0.66686	9.8886	3	0	Plateau	0.88566	0.71526	NaN	1	0	Median	0.65037	0.75254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59965	0.62174	NaN	1	0	Median	517350000	297170000	220180000	190120000	105460000	84659000	124690000	68372000	56316000	0	0	0	202540000	123340000	79208000	27808	5388	26331	173854;173855;173856	235255	235255			1	
KLNSPEETAFQTPK	2	Unmodified	1588.8097	0.80968662	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	35.235	34.784	2;3	3.0421E-05	29568	160511_QHF_FH_JSI12i_3	77.372	65.758			0.88528	0.91908	11.314	5	1	Median	1.0868	0.95945	NaN	1	0	Median	0.81684	1.0079	NaN	1	0	Median	0.90481	0.84105	NaN	1	1	Median	0.83192	0.83451	13.652	2	0	Median	314100000	163630000	150470000	27981000	10429000	17552000	46621000	21986000	24635000	78649000	38564000	40085000	160850000	92647000	68200000	27809	4425	26332	173857;173858;173859;173860;173861	235256;235257;235258;235259	235259			4	
KLNVTEQEK	2	Unmodified	1087.5873	0.58733824	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.65	6	8	17				3	4	4	9	10	10	13	11.533	9.0132	2;3	3.3128E-05	5560	160513_QHF_FH_JSI12Kac_5	89.886	64.264			0.91151	0.96262	67.661	41	21	Median	1.1368	0.95801	63.316	8	4	Median	0.82878	0.99248	63.575	10	4	Median	1.0523	1.0849	79.235	10	5	Median	0.80364	0.87761	67.599	13	8	Median	116280000000	57797000000	58481000000	14543000000	6107000000	8436100000	31478000000	15163000000	16314000000	38669000000	19822000000	18847000000	31588000000	16704000000	14884000000	27810	854	26333	173862;173863;173864;173865;173866;173867;173868;173869;173870;173871;173872;173873;173874;173875;173876;173877;173878;173879;173880;173881;173882;173883;173884;173885;173886;173887;173888;173889;173890;173891;173892;173893;173894;173895;173896;173897;173898;173899;173900;173901;173902;173903	235260;235261;235262;235263;235264;235265;235266;235267;235268;235269;235270;235271;235272;235273;235274;235275;235276;235277;235278;235279;235280;235281;235282;235283;235284;235285;235286;235287;235288;235289;235290;235291;235292;235293;235294;235295;235296;235297;235298;235299;235300;235301;235302;235303;235304;235305;235306;235307;235308;235309;235310;235311;235312;235313;235314;235315;235316;235317;235318;235319;235320;235321;235322;235323;235324;235325	235307			65	
KLNVTEQEKIDK	3	Acetyl (K)	1485.8039	0.80387296	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.599							1	5	2	2	3	1	2	39.4	29.802	3	3.9458E-08	17423	160513_QHF_FH_JSI10Kac_4	113.99	84.684			0.76807	0.87056	37.124	6	0	Median	0.77556	0.66322	NaN	1	0	Median	0.77992	0.921	1.5431	2	0	Median	0.36496	0.35845	NaN	1	0	Median	0.79528	0.87056	6.1016	2	0	Median	215900000	129410000	86483000	21191000	13529000	7661700	56532000	27778000	28753000	101220000	70336000	30885000	36953000	17770000	19183000	27811	854	26334	173904;173905;173906;173907;173908;173909;173910;173911	235326;235327;235328;235329;235330;235331;235332;235333;235334;235335;235336;235337	235330	523;525		12	
KLNYEENK	2	Unmodified	1036.5189	0.51892433	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		8.1833	8.1833	2	0.0037987	5874	160511_QHF_FH_JSI11i_3	92.439	51.41			1.343	1.2316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.343	1.2316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51534000	22578000	28957000	0	0	0	0	0	0	51534000	22578000	28957000	0	0	0	27812	679	26335	173912	235338	235338			1	
KLNYEENKEESLLEK	3	Unmodified	1864.9418	0.941823	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		38.017	37.272	3	0.017987	32424	160511_QHF_FH_JSI11i_3	60.489	49.831			0.73329	0.77118	13.633	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60387	0.70031	NaN	1	0	Median	0.89044	0.84923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144840000	77573000	67267000	0	0	0	61784000	32163000	29620000	83056000	45409000	37647000	0	0	0	27813	679	26336	173913;173914	235339	235339			0	
KLPAIALDLLR	1	Unmodified	1221.7809	0.78089309	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		86.314	86.314	3	0.0036093	77044	160511_QHF_FH_JSI11i_3	45.879	37.775			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27814	4361	26337	173915	235340	235340			1	
KLPATTATPDSSK	2	Unmodified	1315.6983	0.69834526	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	16.816	16.492	2;3	0.0023135	13281	160511_QHF_FH_JSI10i_3	37.897	29.593			1.1282	1.1485	11.731	3	1	Median	NaN	NaN	NaN	0	0	Median	0.89835	1.053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2177	1.235	10.278	2	1	Median	113820000	50172000	63643000	0	0	0	28002000	13386000	14617000	0	0	0	85813000	36787000	49026000	27815	3982	26338	173916;173917;173918	235341;235342	235341			2	
KLPDFLTAK	2	Unmodified	1031.6015	0.60153174	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							4	2	3	2	56.235	55.32	2;3	7.2718E-06	47359	160511_QHF_FH_JSI12i_3	114.97	86.75			1.0157	0.98427	20.138	9	1	Median	1.0896	0.88579	38.947	3	1	Median	0.78204	0.91338	3.7285	2	0	Median	1.0457	0.98948	0.74667	2	0	Median	0.99743	1.0347	0.98627	2	0	Median	2822800000	1521500000	1301400000	798820000	379920000	418900000	569040000	365400000	203640000	517570000	252080000	265490000	937410000	524070000	413340000	27816	4575	26339	173919;173920;173921;173922;173923;173924;173925;173926;173927;173928;173929	235343;235344;235345;235346;235347;235348;235349;235350;235351;235352;235353;235354;235355;235356;235357;235358;235359;235360;235361;235362;235363;235364;235365;235366;235367;235368;235369	235369			27	
KLPDLEK	2	Unmodified	841.49092	0.49091866	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	25.128	25.109	2;3	0.0065405	20860	160511_QHF_FH_JSI12i_3	54.157	7.7314			0.75649	0.70841	65.512	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75649	0.70174	NaN	1	1	Median	1.2353	1.2464	79.899	2	1	Median	300630000	184560000	116060000	0	0	0	0	0	0	99811000	69947000	29865000	200820000	114620000	86200000	27817	5097	26340	173930;173931;173932	235370;235371;235372	235372			3	
KLPDSFFKPPEPK	3	Unmodified	1528.829	0.8289655	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	54.771	54.65	4	0.0023481	48484	160511_QHF_FH_JSI11i_3	59.248	54.07			0.83837	0.8275	6.9306	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90991	0.86907	NaN	1	1	Median	0.77245	0.78793	NaN	1	1	Median	299000000	144390000	154620000	0	0	0	0	0	0	166870000	73730000	93137000	132140000	70657000	61480000	27818	1598	26341	173933;173934	235373;235374;235375	235373			3	
KLPEEVVK	2	Unmodified	940.55933	0.55933258	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	23.685	23.233	3	0.003939	19437	160511_QHF_FH_JSI11i_3	49.715	33.258			1.2575	1.0903	34.068	7	2	Median	1.3256	1.0903	NaN	1	0	Median	0.83604	1.0324	NaN	1	0	Median	1.1883	1.1297	38.48	2	1	Median	1.2575	1.3424	47.726	3	1	Median	515430000	234940000	280480000	25917000	11137000	14780000	40095000	23710000	16385000	147250000	65865000	81384000	302170000	134230000	167940000	27819	552	26342	173935;173936;173937;173938;173939;173940;173941	235376;235377;235378;235379;235380	235376			5	
KLPEMDID	1	Unmodified	959.46338	0.46338328	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	50.39	49.642	2	0.025017	44272	160511_QHF_FH_JSI9i_1	42.869	36.83			0.98463	1.0024	6.4788	7	0	Median	1.1782	0.999	1.9543	2	0	Median	0.82917	0.99408	9.6379	2	0	Median	1.0442	1.0342	11.671	2	0	Median	0.97482	1.0024	NaN	1	0	Median	1599500000	774180000	825330000	277550000	112030000	165520000	520260000	282290000	237970000	629220000	290370000	338850000	172480000	89489000	82995000	27820	1417	26343	173942;173943;173944;173945;173946;173947;173948	235381;235382	235382			2	
KLPEQDIAQGSYIALPLTLLVLLAGYNHDK	2	Unmodified	3292.8071	0.80711443	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	100.01	91.905	3;4	2.1237E-78	55281	160513_QHF_FH_JSI10Kac_6	198.48	153.15			0.87939	0.93885	18.991	6	1	Median	0.87939	0.73812	2.8872	2	1	Median	0.81314	0.96839	4.8659	2	0	Median	1.2936	1.2088	NaN	1	0	Median	0.89673	0.94207	NaN	1	0	Median	4426400000	2276300000	2150000000	960760000	518060000	442700000	1360800000	763080000	597720000	1613300000	748440000	864910000	491450000	246740000	244710000	27821	2638;2895	26344	173949;173950;173951;173952;173953;173954	235383;235384;235385;235386;235387;235388;235389;235390;235391;235392;235393	235392			11	
KLPEYNPR	1	Unmodified	1015.5451	0.5450795	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							3	3			21.326	20.1	2;3	0.0010026	16167	160511_QHF_FH_JSI9i_3	69.628	58.265			0.84238	0.93656	20.143	6	0	Median	1.1925	0.95605	22.413	3	0	Median	0.75709	0.91747	22.579	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	616830000	316150000	300680000	333670000	160290000	173390000	283150000	155860000	127290000	0	0	0	0	0	0	27822	5200	26345	173955;173956;173957;173958;173959;173960	235394;235395;235396;235397;235398	235397			5	
KLPFEIK	2	Unmodified	873.53239	0.53238955	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	3	2	2	49.374	48.667	2;3	0.0022907	41676	160511_QHF_FH_JSI12i_3	79.116	55.144			1.0623	0.98431	26.422	8	2	Median	1.5845	1.3288	43.388	2	1	Median	0.68767	0.8147	14.811	2	1	Median	1.0594	0.97813	12.676	2	0	Median	1.0623	1.0761	11.656	2	0	Median	500930000	251380000	249550000	70990000	34105000	36885000	69553000	36776000	32777000	120570000	53932000	66640000	239810000	126570000	113240000	27823	3119	26346	173961;173962;173963;173964;173965;173966;173967;173968;173969;173970	235399;235400;235401;235402;235403;235404;235405;235406;235407;235408;235409;235410;235411;235412;235413;235414;235415;235416;235417;235418;235419	235418			21	
KLPFLAHALYVQAPTVTIEGFLQALSLAVDK	2	Unmodified	3352.8799	0.87988544	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			101.01	93.559	3;4	6.8223E-107	55879	160513_QHF_FH_JSI10Kac_6	225.78	208.49			0.9095	0.92049	16.285	4	1	Median	1.1937	1.0193	5.0615	2	1	Median	0.66578	0.79278	11.764	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1954500000	1076600000	877880000	561870000	248240000	313640000	1392600000	828400000	564240000	0	0	0	0	0	0	27824	2692	26347	173971;173972;173973;173974	235420;235421;235422;235423;235424;235425;235426	235425			7	
KLPFPDETHER	1	Unmodified	1367.6834	0.68336389	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			31.866	30.471	3;4	0.00028711	24700	160511_QHF_FH_JSI9i_3	56.122	52.109			1.2548	1.3024	17.505	5	2	Median	1.7268	1.4037	18.209	3	1	Plateau	1.0758	1.2464	23.603	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197460000	82770000	114690000	142710000	59372000	83334000	54758000	23398000	31360000	0	0	0	0	0	0	27825	319	26348	173975;173976;173977;173978;173979	235427;235428;235429;235430;235431	235429			5	
KLPGFPTQDDEVMMLTER	1	Unmodified	2106.0126	0.012561881	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		82.556	82.223	3	4.1141E-09	73289	160511_QHF_FH_JSI11i_3	123.41	109.58			1.0726	1.1522	6.935	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88583	1.0971	NaN	1	1	Median	1.2987	1.2102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151200000	86718000	64479000	0	0	0	40193000	19501000	20692000	111000000	67217000	43788000	0	0	0	27826	4640	26349	173980;173981	235432;235433;235434	235432			3	
KLPHPDLPAEEK	2	Unmodified	1372.7351	0.73506511	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	33.14	32.416	3	0.00010268	27531	160511_QHF_FH_JSI10i_3	70.622	56.942			1.046	1.0315	24.509	6	2	Median	1.3746	1.1208	NaN	1	0	Median	0.81137	0.9104	45.184	2	0	Median	1.1071	1.0198	25.165	2	1	Median	0.97869	0.94929	NaN	1	1	Median	599100000	307160000	291940000	122030000	58481000	63547000	206930000	102960000	103970000	239310000	130250000	109060000	30834000	15470000	15365000	27827	2856	26350	173982;173983;173984;173985;173986;173987	235435;235436;235437;235438;235439;235440;235441;235442;235443;235444	235440			10	
KLPIDVTEGEVISLGLPFGK	2	Unmodified	2111.1878	0.18780736	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.35		4	8						3	3	3	4	5	99.805	97.901	2;3	3.5951E-54	88060	160511_QHF_FH_JSI12i_3	256.71	234.95			0.96498	0.97149	20	15	0	Median	1.0948	0.93472	28.096	3	0	Plateau	0.95295	1.1062	5.7711	3	0	Median	0.9953	0.93381	10.813	4	0	Median	0.91462	0.9179	23.238	5	0	Median	13797000000	7199500000	6597600000	616620000	221890000	394740000	1697300000	877450000	819840000	3217400000	1568800000	1648600000	8265800000	4531300000	3734400000	27828	1281	26351	173988;173989;173990;173991;173992;173993;173994;173995;173996;173997;173998;173999;174000;174001;174002	235445;235446;235447;235448;235449;235450;235451;235452;235453;235454;235455;235456;235457;235458;235459;235460;235461;235462;235463;235464;235465	235463			21	
KLPIQEFHLSR	1	Unmodified	1366.7721	0.77211932	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		52.745	51.698	3;4	0.00019245	45071	160511_QHF_FH_JSI11i_3	78.486	66.34			0.90275	0.81393	5.5307	6	2	Median	0.99268	0.80537	1.0952	2	1	Median	0.71074	0.83777	3.6826	2	0	Median	0.90275	0.84425	10.611	2	1	Median	NaN	NaN	NaN	0	0	Median	465580000	244900000	220680000	94234000	46357000	47877000	162810000	86661000	76146000	208530000	111880000	96654000	0	0	0	27829	1488	26352	174003;174004;174005;174006;174007;174008	235466;235467;235468;235469;235470;235471	235467			6	
KLPLGFTFSFPCHQTK	2	Unmodified	1906.9764	0.97637479	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	1		By MS/MS			7.33	6.13			2						1		3			79.189	75.64	3;4	4.4459E-05	39453	160513_QHF_FH_JSI10Kac_6	84.874	81.033			0.83838	0.97715	37.54	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83838	0.97715	37.54	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70800000	32042000	38758000	0	0	0	70800000	32042000	38758000	0	0	0	0	0	0	27830	1785	26353	174009;174010;174011	235472;235473;235474	235474			3	
KLPPLPLTLALGAFLNHR	1	Unmodified	1970.1829	0.18293717	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	2	3	3	96.242	87.591	2;3;4	1.6512E-33	49442	160513_QHF_FH_JSI11Kac_6	168.32	157.98			0.77608	0.77041	7.9303	11	0	Median	0.88165	0.75241	6.0016	3	0	Median	0.67885	0.79792	2.9329	2	0	Median	0.77608	0.72579	4.7095	3	0	Median	0.77202	0.80952	11.237	3	0	Median	12285000000	7008100000	5276800000	2608700000	1297200000	1311600000	5284000000	3217500000	2066500000	2442600000	1407800000	1034900000	1949500000	1085600000	863880000	27831	754	26354	174012;174013;174014;174015;174016;174017;174018;174019;174020;174021;174022	235475;235476;235477;235478;235479;235480;235481;235482;235483;235484;235485;235486;235487;235488;235489;235490;235491	235477			17	
KLPPLPLTLALGAFLNHRK	2	Unmodified	2098.2779	0.27790019	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	3	2	1	91.984	84.019	3;4;5	1.72E-17	47104	160513_QHF_FH_JSI11Kac_6	136.34	126.18			0.56404	0.8028	17.006	9	1	Linear	0.88948	0.78058	4.4155	3	0	Median	0.63635	0.76122	3.276	3	0	Median	1.1196	1.0831	25.1	2	1	Median	0.7718	0.81623	NaN	1	0	Median	5074000000	2870000000	2204000000	926320000	475050000	451280000	3529000000	2071200000	1457900000	339550000	155020000	184520000	279050000	168750000	110300000	27832	754	26355	174023;174024;174025;174026;174027;174028;174029;174030;174031	235492;235493;235494;235495;235496;235497;235498;235499;235500;235501;235502;235503	235492			12	
KLPPLPVVEK	2	Unmodified	1118.7063	0.70633117	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	57.335	55.779	3	0.018832	46784	160511_QHF_FH_JSI10i_3	32.329	21.572			1.0383	0.87784	NaN	1	1	Median	1.0383	0.87784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11849000	5883700	5964800	11849000	5883700	5964800	0	0	0	0	0	0	0	0	0	27833	5004	26356	174032;174033;174034	235504;235505;235506	235504			3	
KLPPVLAIQLK	2	Unmodified	1218.8064	0.80637956	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							4	3	3	3	72.691	71.837	2;3	3.5421E-13	60653	160511_QHF_FH_JSI10i_3	130.75	126.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27834	3921	26357	174035;174036;174037;174038;174039;174040;174041;174042;174043;174044;174045;174046;174047	235507;235508;235509;235510;235511;235512;235513;235514;235515;235516;235517;235518;235519	235512			13	
KLPQVEHVLPLLK	2	Unmodified	1512.9392	0.93918465	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			73.435	71.987	3	0.011475	60364	160511_QHF_FH_JSI10i_3	40.113	39.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27835	1532	26358	174048	235520	235520			1	
KLPSDSGDLEALEGK	2	Unmodified	1557.7886	0.78861683	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	51.357	51.122	2;3	0.00060898	43726	160511_QHF_FH_JSI12i_3	69.602	54.4			1.2061	1.2224	2.8172	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2061	1.2224	2.8172	2	0	Median	189550000	86944000	102600000	0	0	0	0	0	0	0	0	0	189550000	86944000	102600000	27836	426	26359	174049;174050	235521;235522	235521			2	
KLPVDSVFNK	2	Unmodified	1145.6445	0.64445919	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	49.144	48.291	2	0.00060879	39621	160511_QHF_FH_JSI9i_3	70.908	51.93			1.1853	1.1942	25.992	4	3	Median	0.98081	0.80745	NaN	1	0	Median	0.88756	1.0646	NaN	1	1	Median	1.4677	1.3395	NaN	1	1	Median	1.4325	1.4355	NaN	1	1	Median	425500000	211280000	214220000	118850000	60700000	58150000	91039000	52013000	39026000	92014000	41661000	50353000	123600000	56904000	66692000	27837	1679	26360	174051;174052;174053;174054	235523;235524;235525;235526	235525			4	
KLPVPLESVK	2	Unmodified	1108.6856	0.68559572	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	49.785	49.184	2;3	0.00027653	43431	160511_QHF_FH_JSI11i_3	96.342	81.673			0.772	0.77089	10.037	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.79749	0.91038	NaN	1	1	Median	0.79577	0.76003	NaN	1	1	Median	0.77198	0.77089	NaN	1	1	Median	697330000	391690000	305640000	0	0	0	154760000	92255000	62504000	184990000	98771000	86224000	357580000	200660000	156920000	27838	1685;31;191	26361	174055;174056;174057;174058;174059;174060	235527;235528;235529;235530;235531;235532	235527			6	
KLPVPQGPNPVVVVLQQVFQLIQK	2	Unmodified	2667.584	0.58397819	612	O94829	IPO13	Importin-13	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.76	97.037	3	3.0181E-27	57418	160513_QHF_FH_JSI10Kac_6	143.15	139.35			0.67442	0.78006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67442	0.78006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54441000	33643000	20798000	0	0	0	54441000	33643000	20798000	0	0	0	0	0	0	27839	612	26362	174061	235533	235533			1	
KLPVSLSQQK	2	Unmodified	1126.671	0.67100829	5690	Q9Y5Y5	PEX16	Peroxisomal membrane protein PEX16	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				32.113	30.708	2;3	0.023849	24920	160511_QHF_FH_JSI9i_3	27.644	23.943			0.90699	0.74448	11.604	2	0	Median	0.90699	0.74448	11.604	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71679000	41109000	30570000	71679000	41109000	30570000	0	0	0	0	0	0	0	0	0	27840	5690	26363	174062;174063	235534;235535	235534			2	
KLPVVFLQAIPAVYQK	2	Unmodified	1813.0866	0.086577168	4601	Q9GZR1	SENP6	Sentrin-specific protease 6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				99.001	98.754	3	2.3611E-05	80041	160511_QHF_FH_JSI9i_3	77.776	66.514			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27841	4601	26364	174064	235536	235536			1	
KLQANGPVAK	2	Unmodified	1024.6029	0.60292873	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			6							1	1	2	2	10.215	9.984	2;3	0.00108	7607	160511_QHF_FH_JSI11i_3	81.296	48.034			0.86716	1.0076	47.672	5	2	Median	1.6935	1.367	NaN	1	0	Median	0.86716	1.0076	NaN	1	0	Median	0.77259	0.70695	NaN	1	0	Median	1.07	1.097	82.393	2	2	Median	337220000	139530000	197690000	96611000	24408000	72203000	65016000	32877000	32139000	92995000	44810000	48185000	82596000	37432000	45164000	27842	2586	26365	174065;174066;174067;174068;174069;174070	235537;235538;235539;235540	235537			4	
KLQEEIVNSVK	2	Unmodified	1285.7242	0.72416608	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	32.821	32.473	2	0.0052803	28551	160511_QHF_FH_JSI10i_2	53.683	41.636			0.83198	0.83351	34.826	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0498	1.3055	NaN	1	0	Median	0.69501	0.65763	NaN	1	1	Median	0.83198	0.83351	NaN	1	0	Median	209380000	106770000	102610000	0	0	0	30344000	18192000	12152000	57186000	27812000	29374000	121850000	60768000	61084000	27843	464	26366	174071;174072;174073	235541;235542;235543;235544	235542			4	
KLQEESDLELAK	2	Unmodified	1401.7351	0.73512469	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.725	4	8	5							3	4	6	4	35.324	34.709	2;3	9.7051E-16	29634	160511_QHF_FH_JSI11i_2	156.71	112.4			0.88537	0.91443	17.097	17	2	Median	1.1471	0.98132	24.803	3	1	Median	0.83549	1.0155	8.3893	4	0	Median	0.89768	0.86414	15.17	6	1	Median	0.86217	0.9323	23.422	4	0	Median	3562900000	1850800000	1712000000	340640000	192760000	147880000	596680000	359560000	237110000	1176300000	575180000	601140000	1449200000	723310000	725920000	27844	571	26367	174074;174075;174076;174077;174078;174079;174080;174081;174082;174083;174084;174085;174086;174087;174088;174089;174090	235545;235546;235547;235548;235549;235550;235551;235552;235553;235554;235555;235556;235557;235558;235559;235560;235561;235562;235563;235564;235565;235566;235567;235568;235569;235570;235571	235561			27	
KLQEIFLER	1	Acetyl (K)	1216.6816	0.68157298	5854				yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	94.534	85.125	2	0.019781	46208	160513_QHF_FH_JSI12Kac_6	66.435	11.827	+		1.0406	1.0028	72.025	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0406	1.0028	0	2	0	Median	3.2307	3.4913	NaN	1	1	Median	234740000	112260000	122480000	0	0	0	0	0	0	210150000	108660000	101490000	24599000	3607200	20992000	27845	5854	26368	174091;174092;174093	235572;235573;235574	235574	3582		2	
KLQELSSK	2	Unmodified	931.53385	0.53384611	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		10.199	9.882	3	0.013607	7542	160511_QHF_FH_JSI10i_3	43.442	26.529			0.50056	0.51453	5.162	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43446	0.49609	NaN	1	1	Median	0.57671	0.53366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92891000	57420000	35471000	0	0	0	48551000	30354000	18197000	44340000	27066000	17274000	0	0	0	27846	1650	26369	174094;174095	235575;235576	235576			2	
KLQEQEVFFK	2	Unmodified	1294.6921	0.69213767	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	43.004	42.887	2;3	0.00018161	36582	160511_QHF_FH_JSI12i_3	100.48	61.455			1.9337	1.9074	34.516	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4269	1.3687	14.76	2	2	Median	2.4325	2.4413	2.7284	2	2	Median	216760000	75329000	141430000	0	0	0	0	0	0	89249000	30593000	58656000	127510000	44736000	82776000	27847	4673	26370	174096;174097;174098;174099	235577;235578;235579;235580	235580			4	
KLQEQLEK	2	Unmodified	1014.571	0.5709599	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	11.758	11.788	2;3	0.0033558	9314	160511_QHF_FH_JSI11i_3	51.949	19.629			0.70024	0.71576	27.557	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1516	1.0876	18.759	2	0	Median	0.70024	0.71576	NaN	1	0	Median	820960000	457880000	363080000	0	0	0	0	0	0	397210000	192010000	205200000	423740000	265870000	157870000	27848	5213	26371	174100;174101;174102	235581;235582;235583;235584	235582			4	
KLQEQLMGAVVMEK	2	Unmodified	1602.8473	0.84733445	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	57.655	57.4	2	0.0020165	49341	160511_QHF_FH_JSI12i_3	80.96	65.42			0.8382	0.86796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8382	0.86796	NaN	1	1	Median	25080000	11617000	13463000	0	0	0	0	0	0	0	0	0	25080000	11617000	13463000	27849	5432	26372	174103	235585	235585			1	
KLQEYNVGGK	2	Unmodified	1134.6033	0.60332266	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								2		1	16.282	15.629	2;3	0.00051823	12378	160511_QHF_FH_JSI12i_3	50.194	33.941			0.82265	0.95295	22.54	3	2	Median	NaN	NaN	NaN	0	0	Median	0.89999	1.0659	15.842	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7369	0.75961	NaN	1	0	Median	311400000	180170000	131230000	0	0	0	126190000	80785000	45402000	0	0	0	185220000	99387000	85829000	27850	1585	26373	174104;174105;174106	235586;235587;235588	235588			3	
KLQFSLK	2	Unmodified	862.52764	0.52763852	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	3	3	5	4	40.206	37.302	2;3	0.0012954	20275	160513_QHF_FH_JSI9Kac_6	91.041	62.529			0.95488	1.0288	73.267	15	3	Median	1.5524	1.2357	22.617	3	0	Plateau	0.83294	0.99323	15.188	3	0	Median	0.8601	0.82501	106.59	5	2	Median	1.0312	1.0824	71.14	4	1	Median	12489000000	5854500000	6634500000	2900400000	1169700000	1730800000	2756900000	1334600000	1422300000	2801000000	1550300000	1250800000	4030700000	1799900000	2230700000	27851	1172	26374	174107;174108;174109;174110;174111;174112;174113;174114;174115;174116;174117;174118;174119;174120;174121	235589;235590;235591;235592;235593;235594;235595;235596;235597;235598;235599;235600;235601;235602;235603;235604;235605;235606;235607;235608;235609;235610;235611;235612;235613;235614;235615;235616;235617;235618;235619;235620;235621;235622;235623;235624;235625;235626;235627	235614			39	
KLQGEVEK	2	Unmodified	929.5182	0.51819605	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.2		4	9					1		2	2	5	5	7.4408	6.6568	2;3	0.0013151	4869	160511_QHF_FH_JSI11i_3	72.23	22.19			0.65696	0.71735	61.916	14	13	Median	1.1026	0.94611	99.867	2	2	Median	1.1227	1.342	70.306	2	1	Median	0.65462	0.65836	53.539	5	5	Median	0.55562	0.59464	48.95	5	5	Median	4204800000	2479600000	1725200000	240040000	97939000	142100000	277370000	139120000	138240000	1472800000	831240000	641580000	2214600000	1411300000	803270000	27852	263	26375	174122;174123;174124;174125;174126;174127;174128;174129;174130;174131;174132;174133;174134;174135	235628;235629;235630;235631;235632;235633;235634;235635;235636;235637;235638;235639;235640;235641	235629			14	
KLQGQIK	2	Unmodified	813.50724	0.50723743	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	7.0426	6.7637	2;3	0.026819	4212	160511_QHF_FH_JSI12i_3	28.423	8.2818			0.79691	0.92016	15.333	7	0	Median	1.3195	1.0726	9.797	2	0	Median	0.78904	0.91981	0.053908	2	0	Median	0.96556	0.92952	NaN	1	0	Median	0.74622	0.76076	11.205	2	0	Median	532680000	268670000	264010000	158980000	66755000	92229000	118270000	64664000	53606000	62062000	33082000	28979000	193360000	104170000	89192000	27853	1716	26376	174136;174137;174138;174139;174140;174141;174142	235642;235643;235644;235645;235646	235646			5	
KLQIQCVVEDDK	2	Unmodified	1473.7497	0.7497289	1327;1245	P29692;P24534	EEF1D;EEF1B2	Elongation factor 1-delta;Elongation factor 1-beta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		42.515	41.476	2;3	2.9663E-07	36086	160511_QHF_FH_JSI11i_3	128.85	101.73			0.98552	1.1146	15.88	6	2	Median	1.4367	1.1772	2.9184	2	1	Median	0.97659	1.1146	3.1349	2	1	Median	0.91139	0.8617	11.493	2	0	Median	NaN	NaN	NaN	0	0	Median	457940000	208500000	249440000	60983000	24921000	36062000	187320000	90844000	96476000	209630000	92734000	116900000	0	0	0	27854	1327;1245	26377	174143;174144;174145;174146;174147;174148	235647;235648;235649;235650;235651;235652;235653	235647			7	
KLQIYGAGPK	2	Unmodified	1073.6233	0.62332982	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				27.731	26.363	3	0.04395	21360	160511_QHF_FH_JSI9i_3	26.786	19.141			0.87166	0.71571	NaN	1	1	Median	0.87166	0.71571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20513000	13327000	7186000	20513000	13327000	7186000	0	0	0	0	0	0	0	0	0	27855	1515	26378	174149	235654	235654			1	
KLQLYFWK	2	Unmodified	1124.6383	0.6382516	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.288	67.853	3	0.0034064	37401	160513_QHF_FH_JSI10Kac_6	58.815	46.652			1.016	1.0508	16.245	4	0	Median	0.98432	0.84908	NaN	1	0	Median	1.0337	1.2132	NaN	1	0	Median	0.99859	0.96568	NaN	1	0	Median	1.0491	1.1435	NaN	1	0	Median	154940000	83056000	71889000	27483000	12833000	14649000	88079000	44432000	43647000	26924000	18607000	8317300	12459000	7183900	5275100	27856	4137	26379	174150;174151;174152;174153	235655;235656;235657	235657			1	
KLQNLEGK	2	Unmodified	928.53418	0.53418046	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								1	3	2	9.9326	9.8584	2;3	0.0026771	7162	160511_QHF_FH_JSI12i_3	49.418	33.756			0.65808	0.7029	54.824	6	3	Median	NaN	NaN	NaN	0	0	Median	0.64509	0.78207	NaN	1	0	Median	0.38894	0.36277	79.513	3	3	Median	0.70003	0.7029	6.8456	2	0	Median	670290000	402570000	267720000	0	0	0	79549000	42249000	37300000	294760000	189070000	105680000	295980000	171250000	124730000	27857	3555	26380	174154;174155;174156;174157;174158;174159	235658;235659;235660;235661;235662;235663;235664;235665	235664			8	
KLQNMLEEQLTK	2	Unmodified	1473.7861	0.78611441	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			51.85	50.285	3	0.041942	42080	160511_QHF_FH_JSI10i_3	27.676	14.909			0.76239	0.86001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76239	0.86001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39196000	23856000	15339000	0	0	0	39196000	23856000	15339000	0	0	0	0	0	0	27858	2841	26381	174160	235666	235666			0	
KLQPAQTAAK	2	Unmodified	1054.6135	0.61349341	831	P05187;P10696	ALPP;ALPPL2	Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	yes	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	7.2379	7.0862	2	5.1562E-05	4961	160511_QHF_FH_JSI9i_3	92.838	49.03			1.3953	1.1674	49.647	3	0	Plateau	1.3953	1.1674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.369	1.2482	NaN	1	0	Median	0.5071	0.51185	NaN	1	0	Median	236930000	118100000	118830000	103070000	45265000	57802000	0	0	0	71213000	30120000	41093000	62649000	42718000	19931000	27859	831	26382	174161;174162;174163	235667;235668;235669;235670;235671	235669			5	
KLQSSLK	2	Unmodified	802.49125	0.49125301	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	7.9313	7.6189	2;3	0.014549	5373	160511_QHF_FH_JSI11i_3	66.429	23.955			0.83097	0.74989	14.445	4	0	Median	1.0043	0.79082	NaN	1	0	Median	0.56442	0.65183	NaN	1	0	Median	0.99301	0.91145	NaN	1	0	Median	0.69537	0.71109	NaN	1	0	Median	2263000000	767350000	1495700000	823570000	210840000	612730000	492420000	221520000	270900000	550150000	129990000	420160000	396850000	204990000	191860000	27860	4146	26383	174164;174165;174166;174167;174168;174169;174170	235672;235673;235674;235675;235676;235677;235678	235673			7	
KLSDLQTQLSHEIQSDVLTIN	1	Unmodified	2381.2438	0.24381868	1156	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	93.757	93.752	3	0.052266	81381	160511_QHF_FH_JSI12i_3	20.075	12.799			1.0079	1.054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0079	1.054	NaN	1	1	Median	17875000	10514000	7361100	0	0	0	0	0	0	0	0	0	17875000	10514000	7361100	27861	1156	26384	174171	235679	235679			1	
KLSEADNRK	2	Acetyl (K)	1101.5778	0.57783619	5439	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							3	6			4	3	2	7.7096	-1.6208	2;3	0.00016208	2690	160513_QHF_FH_JSI11Kac_5	106.62	71.898			0.45755	0.51672	72.542	9	0	Median	NaN	NaN	NaN	0	0	Median	0.9457	1.1113	11.339	4	0	Median	0.24031	0.23682	17.512	3	0	Median	0.42592	0.46756	14.14	2	0	Median	122940000	85983000	36960000	0	0	0	25867000	12946000	12921000	88425000	67254000	21171000	8651000	5782700	2868300	27862	5439	26385	174172;174173;174174;174175;174176;174177;174178;174179;174180	235680;235681;235682;235683	235683	3414		4	
KLSEADNRK	2	Unmodified	1059.5673	0.5672715	5439	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				4.6231	4.1237	3	0.0046101	2089	160511_QHF_FH_JSI9i_3	57.174	34.533			1.5336	1.2677	NaN	1	1	Median	1.5336	1.2677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	321630000	150520000	171120000	321630000	150520000	171120000	0	0	0	0	0	0	0	0	0	27863	5439	26385	174181;174182	235684;235685	235685			2	
KLSEEEILENPDLFLTSEATDYGR	1	Unmodified	2768.3392	0.33923521	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	96.867	96.874	3	7.014E-14	83874	160511_QHF_FH_JSI12i_3	112.23	91.743			1.2204	1.1934	18.695	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4271	1.3621	NaN	1	0	Median	1.0436	1.0457	NaN	1	0	Median	85248000	35837000	49411000	0	0	0	0	0	0	30689000	14647000	16042000	54559000	21190000	33369000	27864	2524	26386	174183;174184	235686;235687;235688	235688			3	
KLSEIMEK	2	Unmodified	976.52632	0.52631789	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	23.008	22.043	2	0.023555	17727	160511_QHF_FH_JSI9i_3	47.198	8.1758			0.28158	0.26899	131.72	4	3	Median	0.33976	0.27836	170.98	2	1	Median	0.077968	0.09247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78541	0.78248	NaN	1	1	Median	485640000	321790000	163850000	273660000	199520000	74142000	55848000	51382000	4466600	0	0	0	156130000	70886000	85243000	27865	776	26387	174185;174186;174187;174188	235689;235690;235691;235692	235690			4	
KLSELLR	1	Acetyl (K)	899.54402	0.54401687	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	55.233	45.639	2	0.0054173	23791	160513_QHF_FH_JSI12Kac_6	98.523	27.181			0.85447	0.95015	80.37	5	1	Median	1.757	1.4988	64.463	2	0	Median	0.85447	1.0078	NaN	1	0	Median	0.42499	0.40884	NaN	1	0	Median	0.29595	0.31329	NaN	1	1	Median	536720000	332300000	204420000	76653000	33389000	43264000	133500000	77742000	55757000	272950000	168970000	103980000	53616000	52195000	1421300	27866	880	26388	174189;174190;174191;174192;174193	235693;235694	235694	614		2	
KLSELSNSQQSVQTLSLWLIHHR	1	Unmodified	2703.4456	0.44564681	4921;4189	Q96P16;Q9NQG5	RPRD1A;RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1A;Regulation of nuclear pre-mRNA domain-containing protein 1B	no	no	0	0	0	1		By MS/MS			16	0									1		1			80.413	74.817	4	1.9243E-60	41035	160513_QHF_FH_JSI10Kac_6	191.65	173.24			0.58457	0.69528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58457	0.69528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159970000	85918000	74047000	0	0	0	159970000	85918000	74047000	0	0	0	0	0	0	27867	4189;4921	26389	174194	235695;235696	235695			2	
KLSFDFQ	1	Unmodified	883.44397	0.44396847	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	57.211	56.295	2	0.022695	49782	160511_QHF_FH_JSI10i_2	56.122	44.217			0.3934	0.45068	77.405	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.32811	0.40871	NaN	1	0	Median	0.72915	0.7379	NaN	1	0	Median	1.7113	1.8962	NaN	1	0	Median	77983000	44719000	33264000	0	0	0	30030000	18995000	11035000	27357000	17199000	10158000	20596000	8524900	12072000	27868	1226	26390	174195;174196;174197	235697	235697			1	
KLSGLNAFDIAEELVK	2	Unmodified	1745.9564	0.95635086	744	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.12	101.12	3	0.0012604	90114	160511_QHF_FH_JSI11i_3	54.974	43.918			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27869	744	26391	174198	235698	235698			1	
KLSLEEETLWLR	1	Unmodified	1515.8297	0.82969378	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	74.399	74.254	3	2.3954E-05	66239	160511_QHF_FH_JSI11i_3	74.987	69.517			0.91465	0.90747	18.103	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0809	1.0314	NaN	1	0	Median	0.77396	0.79843	NaN	1	0	Median	62014000	32421000	29593000	0	0	0	0	0	0	36539000	17839000	18700000	25475000	14582000	10894000	27870	2592	26392	174199;174200	235699;235700	235699			1	
KLSPTEPK	2	Unmodified	898.51238	0.51238239	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	1		By matching		By MS/MS	3	0			2								1		1	9.0991	8.8538	2	0.035945	6211	160511_QHF_FH_JSI12i_3	40.502	21.245			0.82637	0.89002	41.674	2	0	Median	NaN	NaN	NaN	0	0	Median	0.58261	0.66286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1721	1.195	NaN	1	0	Median	145280000	65585000	79696000	0	0	0	35813000	21137000	14676000	0	0	0	109470000	44447000	65020000	27871	210	26393	174201;174202	235701	235701			1	
KLSSETYSQAK	2	Unmodified	1240.6299	0.62993134	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.9544	10.049	2	0.013134	7367	160511_QHF_FH_JSI12i_3	44.309	29.159			1.9492	2.0202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9492	2.0202	NaN	1	0	Median	24619000	6806800	17812000	0	0	0	0	0	0	0	0	0	24619000	6806800	17812000	27872	2282	26394	174203	235702	235702			1	
KLSSWDQAETPGHTPSLR	1	Acetyl (K)	2051.0072	0.007217228	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	59.708	49.822	3	0.033598	26056	160513_QHF_FH_JSI12Kac_6	37.292	27.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6542500	0	6542500	0	0	0	0	0	0	0	0	0	6542500	0	6542500	27873	542	26395	174204	235703	235703			1	
KLTAENEK	2	Unmodified	931.49746	0.4974606	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	5.1299	5.0027	2	0.050526	2648	160511_QHF_FH_JSI12i_3	37.344	17.062			0.95586	0.96118	56.151	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.31205	0.35698	NaN	1	0	Median	0.99533	0.92636	NaN	1	0	Median	0.95586	0.96118	NaN	1	0	Median	370690000	196670000	174020000	0	0	0	60462000	43281000	17181000	147800000	69605000	78195000	162430000	83789000	78641000	27874	5677	26396	174205;174206;174207	235704	235704			1	
KLTAGEACAQGLVTEVFPDSTFQK	2	Unmodified	2596.2843	0.28430329	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	83.981	83.714	3	2.7616E-09	72559	160511_QHF_FH_JSI12i_3	81.949	74.503			0.86471	0.82252	34.383	3	1	Median	NaN	NaN	NaN	0	0	Median	0.44547	0.54367	NaN	1	1	Median	0.86471	0.82252	NaN	1	0	Median	1.036	1.0758	NaN	1	0	Median	219060000	108220000	110830000	0	0	0	20273000	15944000	4329500	128630000	62245000	66387000	70150000	30034000	40116000	27875	538	26397	174208;174209;174210;174211	235705;235706;235707;235708;235709;235710;235711;235712;235713;235714	235711			10	
KLTDNQTSTMIK	2	Unmodified	1378.7126	0.71261511	5387	Q9UL18;Q9HCK5	AGO1;AGO4	Protein argonaute-1;Protein argonaute-4	no	no	0	0	0	1				By MS/MS	3	0			1										1	21.462	21.463	2	0.011952	17559	160511_QHF_FH_JSI12i_3	61.353	24.66			2.2865	2.3582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2865	2.3582	NaN	1	1	Median	14979000	5101200	9878200	0	0	0	0	0	0	0	0	0	14979000	5101200	9878200	27876	5387	26398	174212	235715	235715			1	
KLTDPTGWVTIDENTGSIK	2	Unmodified	2074.0582	0.058249746	2189	Q02487	DSC2	Desmocollin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	72.127	71.978	3	0.00011489	62375	160511_QHF_FH_JSI12i_3	63.447	54.164			0.88291	0.90415	53.367	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65545	0.61995	NaN	1	0	Median	1.1893	1.3186	NaN	1	1	Median	112880000	60528000	52349000	0	0	0	0	0	0	41655000	25088000	16567000	71222000	35440000	35782000	27877	2189	26399	174213;174214;174215	235716;235717;235718;235719	235719			4	
KLTEAMGGGWQQEQFEHYK	2	Unmodified	2266.0477	0.047701834	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		52.033	52.033	3	0.037152	46072	160511_QHF_FH_JSI11i_3	27.924	19.932			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12301000	12301000	0	0	0	0	0	0	0	12301000	12301000	0	0	0	0	27878	5289	26400	174216	235720	235720			1	
KLTECQLK	2	Unmodified	1018.5481	0.54811597	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	11.764	11.794	2	0.0037741	8957	160511_QHF_FH_JSI12i_3	70.919	45.182			1.1687	1.1942	53.544	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1846	1.1116	75.497	2	2	Median	1.1687	1.1942	NaN	1	0	Median	634500000	295020000	339480000	0	0	0	0	0	0	211680000	100670000	111000000	422820000	194340000	228470000	27879	1857	26401	174217;174218;174219	235721;235722;235723	235723			3	
KLTEDDLILLEK	2	Unmodified	1428.8076	0.80756135	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	2	5	66.87	66.339	2;3	0.003409	58906	160511_QHF_FH_JSI11i_3	51.211	23.349			0.60644	0.61968	35.878	9	6	Median	0.52502	0.44518	NaN	1	1	Median	0.60644	0.7477	NaN	1	0	Median	0.45233	0.44045	51.085	2	1	Median	0.61503	0.61968	29.182	5	4	Median	959060000	596750000	362310000	23362000	12717000	10645000	71796000	41115000	30681000	262050000	184180000	77864000	601860000	358740000	243120000	27880	5495	26402	174220;174221;174222;174223;174224;174225;174226;174227;174228	235724;235725;235726;235727;235728;235729;235730;235731	235724			6	
KLTELGTVDPK	2	Unmodified	1199.6762	0.67615325	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3.83	3.39		2	9					1			4	5	3	32.573	31.246	2;3	1.6397E-05	26389	160511_QHF_FH_JSI12i_3	111.65	73.566			1.5523	1.5553	95.717	12	11	Median	NaN	NaN	NaN	0	0	Median	0.90409	1.037	60.293	4	4	Median	1.7346	1.727	89.945	5	4	Median	3.116	3.2239	165.7	3	3	Median	2020600000	839380000	1181200000	0	0	0	367710000	214420000	153290000	669660000	219990000	449660000	983190000	404960000	578230000	27881	1600	26403	174229;174230;174231;174232;174233;174234;174235;174236;174237;174238;174239;174240	235732;235733;235734;235735;235736;235737;235738;235739;235740;235741;235742;235743;235744;235745;235746;235747;235748	235747			17	
KLTELSMQDEELMK	2	Oxidation (M)	1709.8216	0.82157321	1978	P62072	TIMM10	Mitochondrial import inner membrane translocase subunit Tim10	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			4									2	2	46.064	45.903	3	2.4722E-05	40201	160511_QHF_FH_JSI11i_3	73.887	62.118			0.57987	0.5681	54.857	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7905	0.75031	NaN	1	0	Median	0.94605	0.95652	75.003	2	1	Median	109480000	57620000	51858000	0	0	0	0	0	0	37135000	22091000	15044000	72343000	35529000	36814000	27882	1978	26404	174241;174242;174243;174244	235749;235750;235751;235752;235753;235754	235750		1643;1644	6	
KLTELSMQDEELMK	2	Unmodified	1693.8267	0.82665859	1978	P62072	TIMM10	Mitochondrial import inner membrane translocase subunit Tim10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	2	3	56.612	56.212	2;3	3.78E-11	48210	160511_QHF_FH_JSI12i_3	127.36	114.97			1.0988	1.0647	19.079	6	2	Median	1.4107	1.2241	NaN	1	1	Median	0.82138	1.005	NaN	1	0	Median	1.3991	1.322	25.193	2	1	Median	0.95834	0.97414	7.1576	2	0	Median	791130000	374540000	416590000	77897000	32610000	45287000	44481000	27119000	17362000	322680000	118800000	203880000	346070000	196010000	150060000	27883	1978	26404	174245;174246;174247;174248;174249;174250;174251	235755;235756;235757;235758;235759;235760;235761;235762;235763;235764	235762			10	
KLTEWFK	2	Unmodified	950.52255	0.52255314	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	43.236	42.156	2;3	0.0022637	35391	160511_QHF_FH_JSI10i_3	79.597	51.49			0.92216	0.87605	20.043	6	0	Median	1.0952	0.87605	9.8432	2	0	Median	0.92216	1.0657	2.6585	2	0	Median	0.67696	0.6403	NaN	1	0	Median	0.77095	0.77283	NaN	1	0	Median	860220000	422230000	438000000	309210000	136380000	172830000	231710000	125020000	106690000	106490000	53359000	53127000	212810000	107470000	105350000	27884	3860	26405	174252;174253;174254;174255;174256;174257	235765;235766;235767;235768;235769;235770;235771;235772;235773;235774;235775	235768			11	
KLTFEYR	1	Unmodified	955.51272	0.51271674	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		30.457	29.535	2	0.015446	24253	160511_QHF_FH_JSI9i_3	65.038	26.8			0.98096	0.83638	4.984	3	0	Plateau	1.0278	0.83638	NaN	1	0	Median	0.78881	0.91127	NaN	1	0	Median	0.90408	0.83545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	301720000	144890000	156820000	122450000	53874000	68578000	65967000	37677000	28290000	113300000	53340000	59957000	0	0	0	27885	2645	26406	174258;174259;174260	235776;235777;235778;235779;235780	235780			5	
KLTFLYLANDVIQNSK	2	Unmodified	1866.0251	0.025099124	4921;4189	Q96P16;Q9NQG5	RPRD1A;RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1A;Regulation of nuclear pre-mRNA domain-containing protein 1B	no	no	0	0	0	1		By MS/MS			16	0									1		1			85.175	79.508	3	0.0043123	44522	160513_QHF_FH_JSI10Kac_6	56.039	46.118			0.5038	0.59112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5038	0.59112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45535000	33998000	11537000	0	0	0	45535000	33998000	11537000	0	0	0	0	0	0	27886	4189;4921	26407	174261	235781	235781			1	
KLTGGSNWQPK	2	Unmodified	1214.6408	0.6407708	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		19.055	18.349	2;3	2.6414E-05	14764	160511_QHF_FH_JSI9i_3	72.652	48.398			1.1431	1.0112	15.34	5	0	Median	1.1344	0.91071	14.808	2	0	Median	0.72252	0.83982	NaN	1	0	Median	1.1914	1.1099	8.4696	2	0	Median	NaN	NaN	NaN	0	0	Median	608530000	283450000	325080000	187040000	92223000	94817000	119920000	68927000	50994000	301570000	122300000	179270000	0	0	0	27887	2425	26408	174262;174263;174264;174265;174266	235782;235783;235784;235785;235786;235787	235787			6	
KLTGIKHELQANCYEEVK	3	Acetyl (K)	2201.1151	0.11505312	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		60.131	50.417	3	0.0080624	27285	160513_QHF_FH_JSI11Kac_6	63.337	54.173			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4234900	4234900	0	0	0	0	0	0	0	4234900	4234900	0	0	0	0	27888	1236	26409	174267	235788	235788	1126;1127;1128		1	
KLTGKDVNFEFPEFQL	2	Acetyl (K)	1952.9884	0.98837927	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		93.192	83.809	2	1.4763E-21	47216	160513_QHF_FH_JSI11Kac_6	147.24	98.296			0.4528	0.43393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4528	0.43393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82712000	56030000	26682000	0	0	0	0	0	0	82712000	56030000	26682000	0	0	0	27889	1979	26410	174268	235789	235789	2000		1	
KLTHAAPCMLFMK	2	Unmodified	1546.7822	0.78223178	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	50.064	49.946	2;3	7.4235E-05	42959	160511_QHF_FH_JSI12i_3	66.989	62.597			1.2665	1.2449	44.753	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0474	1.0044	63.23	2	2	Median	1.2665	1.2858	37.422	2	1	Median	996910000	417010000	579900000	0	0	0	0	0	0	616390000	251160000	365230000	380520000	165850000	214670000	27890	595	26411	174269;174270;174271;174272	235790;235791;235792;235793;235794;235795;235796	235795			7	
KLTHAAPCMLFMK	2	Oxidation (M)	1562.7771	0.7771464	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			42.739	41.205	3	0.014749	34395	160511_QHF_FH_JSI10i_3	37.613	25.637			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27891	595	26411	174273	235797	235797		225	1	
KLTLLPAVVMHLK	2	Unmodified	1461.9105	0.91052706	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	80.959	79.997	3	1.3756E-05	68344	160511_QHF_FH_JSI12i_3	78.763	73.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27892	4246	26412	174274;174275;174276	235798;235799;235800	235800			3	
KLTLPLFGAMK	2	Unmodified	1217.7206	0.72060102	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	3	1	1	81.757	80.427	3	0.0006051	71068	160511_QHF_FH_JSI11i_3	64.439	56.334			0.91145	0.89139	9.929	2	2	Median	1.0166	0.83095	NaN	1	1	Median	0.81714	0.95622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67174000	33187000	33987000	39833000	19221000	20612000	27341000	13966000	13375000	0	0	0	0	0	0	27893	4505	26413	174277;174278;174279;174280;174281;174282;174283;174284	235801;235802;235803;235804;235805;235806;235807;235808;235809;235810	235801			10	
KLTPEQFYVTR	1	Unmodified	1380.7402	0.74015049	5585	Q9Y3D2	MSRB2	Methionine-R-sulfoxide reductase B2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		46.523	45.254	2;3	7.3938E-05	37199	160511_QHF_FH_JSI9i_3	64.121	61.254			0.9505	0.84895	7.1301	5	0	Median	1.0014	0.81215	4.7429	2	0	Median	0.74768	0.86045	1.9021	2	0	Median	0.98706	0.95592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	378320000	193690000	184640000	149090000	76592000	72496000	165130000	86337000	78794000	64105000	30756000	33349000	0	0	0	27894	5585	26414	174285;174286;174287;174288;174289	235811;235812	235812			2	
KLTPITYPQGLAMAK	2	Oxidation (M)	1646.9066	0.90656389	2045	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	54.898	53.914	2;3	7.9041E-05	46208	160511_QHF_FH_JSI12i_3	84.173	80.332			0.95168	0.89304	17.463	5	1	Median	1.2385	0.99942	15.917	2	1	Median	0.73888	0.86412	NaN	1	0	Median	0.95168	0.89859	NaN	1	0	Median	0.66243	0.68399	NaN	1	0	Median	1373700000	688480000	685210000	500160000	225160000	275000000	286630000	153630000	133000000	272070000	120830000	151240000	314840000	188860000	125980000	27895	2045	26415	174290;174291;174292;174293;174294	235813;235814;235815;235816;235817;235818;235819;235820;235821	235821		1709	9	
KLTPITYPQGLAMAK	2	Unmodified	1630.9116	0.91164927	2045	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							3	3	4	3	62.886	62.159	2;3	6.6592E-12	51080	160511_QHF_FH_JSI9i_3	103.85	95.877			0.70544	0.69611	12.095	7	7	Median	0.90559	0.71869	1.5005	2	2	Median	0.70544	0.82509	NaN	1	1	Median	0.65806	0.62427	15.404	2	2	Median	0.6401	0.64697	2.9644	2	2	Median	5092900000	2661500000	2431400000	1558200000	707720000	850480000	285350000	155680000	129670000	1313900000	654420000	659470000	1935400000	1143700000	791740000	27896	2045	26415	174295;174296;174297;174298;174299;174300;174301;174302;174303;174304;174305;174306;174307	235822;235823;235824;235825;235826;235827;235828;235829;235830;235831;235832;235833;235834;235835;235836	235831			15	
KLTPQGQR	1	Unmodified	926.52976	0.52976379	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.4008	4.9014	2	0.059753	2873	160511_QHF_FH_JSI9i_3	49.554	36.046			0.89587	0.70919	NaN	1	1	Median	0.89587	0.70919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	165140000	82973000	82163000	165140000	82973000	82163000	0	0	0	0	0	0	0	0	0	27897	1483	26416	174308	235837	235837			1	
KLTPVQVLEYGEAIAK	2	Unmodified	1757.9927	0.99273636	4509	Q9BX66	SORBS1	Sorbin and SH3 domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	87.468	87.337	3	0.015629	75841	160511_QHF_FH_JSI12i_3	37.583	27.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27898	4509	26417	174309	235838	235838			1	
KLTQEQVSDSQVLIR	1	Unmodified	1742.9527	0.95266246	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		42.929	42.146	3	8.6309E-05	36962	160511_QHF_FH_JSI11i_3	93.51	79.606			1.1094	1.0977	9.8873	4	3	Median	1.2228	1.052	NaN	1	1	Median	1.0011	1.1453	NaN	1	0	Median	1.1126	1.0438	15.228	2	2	Median	NaN	NaN	NaN	0	0	Median	273260000	139280000	133980000	6365500	3244800	3120600	60432000	27004000	33428000	206460000	109030000	97432000	0	0	0	27899	5179	26418	174310;174311;174312;174313	235839;235840;235841;235842;235843	235840			5	
KLTQIQESQVTSHNK	2	Unmodified	1739.9166	0.91661131	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			18.341	17.223	3	5.6725E-05	13734	160511_QHF_FH_JSI9i_3	101.42	90.567			1.0293	1.0034	25.128	2	1	Median	1.4444	1.1985	NaN	1	1	Median	0.73357	0.84003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92486000	46718000	45768000	45829000	18859000	26970000	46657000	27859000	18798000	0	0	0	0	0	0	27900	3839	26419	174314;174315	235844;235845	235845			2	
KLTQTSGETTHTDK	2	Unmodified	1545.7635	0.76346471	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		5.701	5.3979	2;3	3.8125E-16	3325	160511_QHF_FH_JSI11i_3	168.1	139.81			0.92473	0.76293	59.739	5	1	Median	0.92473	0.76293	NaN	1	0	Median	0.56062	0.63971	22.688	2	1	Median	2.0661	1.9207	23.598	2	0	Median	NaN	NaN	NaN	0	0	Median	484880000	221470000	263410000	99051000	46632000	52419000	117740000	79240000	38496000	268090000	95597000	172500000	0	0	0	27901	1576	26420	174316;174317;174318;174319;174320	235846;235847;235848;235849;235850;235851	235846			6	
KLTSDEEGEPSGK	2	Unmodified	1375.6467	0.64670362	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	8.776	8.776	2	4.0942E-05	6259	160511_QHF_FH_JSI12i_3	83.397	65.129			0.81684	0.75277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81684	0.75277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20405000	13893000	6512100	0	0	0	0	0	0	20405000	13893000	6512100	0	0	0	27902	3778	26421	174321;174322;174323	235852;235853;235854;235855	235855			4	
KLTSDLGR	1	Unmodified	888.50288	0.50288033	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		11.879	11.382	2	0.020909	8916	160511_QHF_FH_JSI11i_3	45.7	23.953			1.2293	1.0435	15.048	3	0	Plateau	1.3315	1.0842	NaN	1	0	Median	0.70512	0.80482	NaN	1	0	Median	1.0511	0.96875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	379030000	197270000	181770000	142460000	60996000	81463000	99900000	59314000	40586000	136670000	76956000	59717000	0	0	0	27903	5213	26422	174324;174325;174326	235856;235857	235857			2	
KLTSEEIEAK	2	Unmodified	1146.6132	0.61321864	3924	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	16.166	16.218	2;3	0.010184	12894	160511_QHF_FH_JSI12i_3	40.154	22.345			0.61785	0.62952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61785	0.62952	NaN	1	1	Median	25975000	18019000	7955500	0	0	0	0	0	0	0	0	0	25975000	18019000	7955500	27904	3924	26423	174327;174328	235858;235859	235859			2	
KLTTDPDLILEVLR	1	Unmodified	1624.94	0.93997251	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.75	0.433		1	3								3		1	98.487	98.381	3	0.0026792	81763	160511_QHF_FH_JSI10i_3	48.112	41.23			0.77836	0.8343	30.415	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.59039	0.70362	40.702	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77836	0.8343	NaN	1	1	Median	60754000	36585000	24168000	0	0	0	12889000	8712800	4176500	0	0	0	47864000	27872000	19992000	27905	3206	26424	174329;174330;174331;174332	235860;235861;235862;235863;235864	235862			5	
KLTVKPIETK	3	Unmodified	1155.7227	0.72270951	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		18.357	18.357	3	0.0078363	15199	160511_QHF_FH_JSI11i_3	50.354	29.576			0.29071	0.2698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29071	0.2698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73074000	58062000	15013000	0	0	0	0	0	0	73074000	58062000	15013000	0	0	0	27906	4610	26425	174333;174334	235865;235866	235866			2	
KLTVKPIETK	3	Acetyl (K)	1197.7333	0.7332742	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	1	0	0	2	By MS/MS				16	0									1	1				43.071	33.938	3	0.046216	18188	160513_QHF_FH_JSI9Kac_6	44.612	30.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27907	4610	26425	174335	235867	235867			1	
KLTVNGFVEPHK	2	Unmodified	1367.7561	0.75613491	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			37.03	35.572	3	0.013602	29666	160511_QHF_FH_JSI10i_3	41.644	33.131			0.44049	0.51121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44049	0.51121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13115000	9947400	3167300	0	0	0	13115000	9947400	3167300	0	0	0	0	0	0	27908	5323	26426	174336;174337	235868;235869	235868			2	
KLTVNPGTK	2	Unmodified	956.56548	0.56548059	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.68		1	8						3	3	4	3	2	13.379	11.157	2;3	0.00087428	9110	160511_QHF_FH_JSI10i_3	49.472	32.932			0.9515	0.93868	21.768	12	0	Median	1.166	0.8992	6.3509	3	0	Plateau	0.80311	0.95338	8.9047	4	0	Median	1.002	0.97379	5.5809	3	0	Median	0.56037	0.56482	5.2135	2	0	Median	12446000000	6252900000	6193600000	3861500000	1546800000	2314700000	2505200000	1364500000	1140700000	2823700000	1384900000	1438700000	3256100000	1956700000	1299400000	27909	939	26427	174338;174339;174340;174341;174342;174343;174344;174345;174346;174347;174348;174349	235870;235871;235872;235873;235874;235875;235876;235877;235878;235879;235880;235881;235882;235883;235884;235885;235886;235887;235888;235889;235890;235891	235878			22	
KLTWLYQLSK	2	Unmodified	1278.7336	0.73360855	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1	By matching	By MS/MS			16	0									2	1	1			73.352	65.326	3	0.0060521	35915	160513_QHF_FH_JSI10Kac_6	43.68	35.814			0.95201	0.94778	18.404	2	0	Median	0.9741	0.83212	NaN	1	0	Median	0.93042	1.0795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68469000	38023000	30446000	17664000	10952000	6711900	50805000	27071000	23734000	0	0	0	0	0	0	27910	2453	26428	174350;174351	235892	235892			1	
KLVDLYYQEK	2	Unmodified	1297.6918	0.69180331	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	42.409	41.537	2	0.024325	35187	160511_QHF_FH_JSI12i_3	54.198	41.078			1.584	1.7019	36.481	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9817	2.2028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.266	1.315	NaN	1	1	Median	69212000	27338000	41873000	0	0	0	30572000	13190000	17382000	0	0	0	38640000	14148000	24492000	27911	3117	26429	174352;174353	235893;235894	235894			2	
KLVELLR	1	Unmodified	869.56984	0.56983769	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		37.831	36.725	3	0.0055263	31002	160511_QHF_FH_JSI10i_3	57.281	15.779			0.9185	0.79952	69.255	4	2	Median	1.0966	0.88769	NaN	1	0	Median	0.88549	1.0011	116.9	2	2	Median	0.76933	0.72011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	165440000	84282000	81160000	44273000	20984000	23290000	54520000	30881000	23638000	66649000	32417000	34232000	0	0	0	27912	1459	26430	174354;174355;174356;174357	235895;235896;235897;235898	235896			4	
KLVESLPQEIK	2	Unmodified	1282.7497	0.74965254	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	3	4	3	43.157	42.471	2;3	2.4742E-05	36289	160511_QHF_FH_JSI12i_3	107.18	43.892			0.81414	0.84322	16.751	11	6	Median	0.93373	0.80871	7.8198	2	1	Median	0.81165	0.98545	17.658	3	1	Median	0.89394	0.87537	12.754	4	2	Median	0.69092	0.69854	2.6107	2	2	Median	4355200000	2131300000	2223900000	335090000	165370000	169720000	521620000	271270000	250350000	1420300000	661820000	758440000	2078300000	1032900000	1045400000	27913	1786	26431	174358;174359;174360;174361;174362;174363;174364;174365;174366;174367;174368;174369	235899;235900;235901;235902;235903;235904;235905;235906;235907;235908;235909;235910	235908			12	
KLVGYLDR	1	Unmodified	962.55492	0.5549159	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		29.224	28.398	2;3	0.002025	24283	160511_QHF_FH_JSI11i_3	50.805	33.419			0.7758	0.721	26.586	5	0	Median	1.0258	0.82616	1.7265	2	0	Median	0.36575	0.4342	NaN	1	0	Median	0.76784	0.71765	0.66	2	0	Median	NaN	NaN	NaN	0	0	Median	720150000	393390000	326760000	268140000	130520000	137620000	93854000	65514000	28340000	358160000	197360000	160800000	0	0	0	27914	873	26432	174370;174371;174372;174373;174374	235911;235912;235913;235914;235915;235916	235913			6	
KLVILEGELER	1	Unmodified	1297.7606	0.76055158	73;2069;886	CON__Q3SX28;P07951;P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		56.998	55.76	2;3	0.0025825	46706	160511_QHF_FH_JSI10i_3	47.062	43.721		+	0.57625	0.55044	62.589	5	0	Median	1.8824	1.5393	3.5731	2	0	Median	0.41603	0.47222	12.724	2	0	Median	0.57625	0.55044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147370000	72648000	74722000	49892000	13049000	36843000	54987000	35224000	19763000	42491000	24374000	18117000	0	0	0	27915	73;886;2069	26433	174375;174376;174377;174378;174379	235917;235918;235919;235920	235918			3	
KLVINSGNGAVEDR	1	Unmodified	1470.7791	0.77905519	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		26.057	25.072	2;3	3.9913E-05	20298	160511_QHF_FH_JSI9i_3	75.316	66.266			0.69446	0.67875	60.06	4	3	Median	0.6698	0.55149	NaN	1	0	Median	0.97797	1.1269	42.334	2	2	Median	0.39408	0.37353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159050000	91952000	67098000	67703000	35725000	31978000	66920000	37700000	29220000	24428000	18528000	5899500	0	0	0	27916	1089	26434	174380;174381;174382;174383;174384	235921;235922;235923;235924;235925;235926	235924			6	
KLVIPSELGYGER	1	Acetyl (K)	1501.814	0.81404372	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.642	68.033	2	0.017677	36158	160513_QHF_FH_JSI11Kac_5	62.303	34.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1674700	1674700	0	0	0	0	0	0	0	1674700	1674700	0	0	0	0	27917	1285	26435	174385	235927	235927	1211		1	
KLVIVGDGACGK	2	Unmodified	1215.6645	0.66454271	1957;892	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	2	2	4	28.899	28.426	2;3	3.5639E-05	24305	160511_QHF_FH_JSI11i_3	69.03	63.932			0.8184	0.93675	37.349	9	4	Median	1.2763	1.037	NaN	1	0	Median	0.85129	0.98536	7.1544	2	0	Median	0.71116	0.66721	3.3127	2	0	Median	0.81852	0.83042	54.763	4	4	Median	2021500000	983530000	1037900000	122770000	46793000	75973000	321310000	157360000	163950000	431390000	241910000	189480000	1146000000	537460000	608530000	27918	1957;892	26436	174386;174387;174388;174389;174390;174391;174392;174393;174394	235928;235929;235930;235931;235932;235933;235934;235935;235936;235937;235938;235939;235940;235941;235942	235928			15	
KLVLILNK	2	Unmodified	939.64809	0.64808801	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			48.838	47.249	3	0.0010411	38707	160511_QHF_FH_JSI9i_3	75.109	59.447			0.67526	0.63469	21.153	2	2	Median	0.69296	0.54652	NaN	1	1	Median	0.65801	0.73709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51990000	29088000	22903000	30408000	16369000	14038000	21583000	12718000	8864500	0	0	0	0	0	0	27919	4481	26437	174395;174396;174397	235943;235944;235945	235944			3	
KLVNETFQK	2	Unmodified	1105.6132	0.61315906	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			21.676	20.471	2	0.019879	16765	160511_QHF_FH_JSI10i_3	58.981	30.807			0.62649	0.7255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62649	0.7255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19630000	12399000	7230900	0	0	0	19630000	12399000	7230900	0	0	0	0	0	0	27920	3063	26438	174398	235946	235946			1	
KLVVVFGGTGAQGGSVAR	1	Unmodified	1701.9526	0.95260288	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				58.56	49.409	3	0.011153	26282	160513_QHF_FH_JSI9Kac_6	47.113	36.774			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27921	4844	26439	174399	235947	235947			1	
KLVWVPSDK	2	Unmodified	1070.6124	0.61243078	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	41.932	41.105	2;3	0.00073301	33885	160511_QHF_FH_JSI9i_3	75.378	48.994			0.84474	0.82602	12.682	8	0	Median	0.84406	0.68431	14.342	2	0	Median	0.77421	0.88504	8.8685	2	0	Median	0.88368	0.84648	4.3512	2	0	Median	0.81429	0.81923	7.6496	2	0	Median	4247400000	2173500000	2073900000	603080000	313750000	289330000	1164100000	721580000	442550000	886380000	447690000	438690000	1593800000	690500000	903270000	27922	1436	26440	174400;174401;174402;174403;174404;174405;174406;174407	235948;235949;235950;235951;235952;235953;235954;235955;235956;235957;235958;235959;235960;235961;235962;235963;235964;235965;235966;235967;235968;235969;235970;235971;235972	235960			25	
KLVWVPSDK	2	Acetyl (K)	1112.623	0.62299547	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		69.577	58.715	2	0.00035841	31554	160513_QHF_FH_JSI11Kac_5	93.111	43.693			0.16306	0.16095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16306	0.16095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5562000	4605400	956670	0	0	0	0	0	0	5562000	4605400	956670	0	0	0	27923	1436	26440	174408	235973	235973	1407		1	
KLVYLYLMNYAK	2	Unmodified	1517.8316	0.83160804	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	81.111	72.853	2;3	3.1967E-61	38352	160513_QHF_FH_JSI12Kac_6	224.52	182.52			0.85799	0.88808	19.306	8	0	Median	1.1818	1.0169	20.147	2	0	Median	0.6854	0.81192	13.677	2	0	Median	0.73928	0.70541	21.94	2	0	Median	0.87165	0.92865	2.1039	2	0	Median	3335000000	1800700000	1534300000	1050400000	448670000	601710000	1555400000	926770000	628660000	328420000	174660000	153760000	400760000	250590000	150170000	27924	2046;2296	26441	174409;174410;174411;174412;174413;174414;174415;174416	235974;235975;235976;235977;235978;235979;235980;235981;235982;235983;235984;235985;235986;235987;235988;235989	235984			16	
KLVYLYLMNYAK	2	Oxidation (M)	1533.8265	0.82652266	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									7	3	2		2	73.302	64.792	2;3	0.00065677	33926	160513_QHF_FH_JSI12Kac_6	65.395	59.902			0.81139	0.87898	26.93	7	1	Median	0.79651	0.67995	35.512	3	1	Median	0.78712	0.94166	14.713	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95141	1.0335	22.898	2	0	Median	353930000	186980000	166950000	163790000	94556000	69232000	115670000	57172000	58498000	0	0	0	74470000	35252000	39218000	27925	2046;2296	26441	174417;174418;174419;174420;174421;174422;174423	235990;235991;235992;235993;235994;235995	235993		1712	5	
KLVYVYLVR	1	Unmodified	1151.7067	0.70666552	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	65.619	56.452	2;3	5.1071E-05	29906	160513_QHF_FH_JSI9Kac_6	101.64	86.977			0.856	0.9887	14.601	8	0	Median	1.2247	1.048	3.5497	2	0	Median	0.856	0.9887	1.5577	2	0	Median	0.94657	0.9278	21.204	2	0	Median	0.74512	0.77672	4.3242	2	0	Median	536600000	280830000	255770000	144200000	66086000	78118000	263440000	144230000	119210000	60462000	30064000	30398000	68493000	40451000	28041000	27926	107	26442	174424;174425;174426;174427;174428;174429;174430;174431	235996;235997;235998;235999;236000;236001	235997			6	
KLYANMFER	1	Acetyl (K)	1212.5961	0.59612879	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.311	56.672	2	0.011391	30692	160513_QHF_FH_JSI11Kac_6	86.136	70.521			0.33099	0.31606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33099	0.31606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10566000	7411400	3154600	0	0	0	0	0	0	10566000	7411400	3154600	0	0	0	27927	2193	26443	174432	236002	236002	2308		1	
KLYDIDVAK	2	Unmodified	1063.5914	0.59136099	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	2	3	36.931	36.254	2;3	0.00047992	30488	160511_QHF_FH_JSI12i_3	58.699	50.117			0.9998	0.94528	46.742	9	1	Median	0.90831	0.78035	11.443	2	0	Median	0.77233	0.94063	0.69738	2	0	Median	0.68564	0.66429	57.939	2	0	Median	1.216	1.251	41.795	3	1	Median	1137700000	538050000	599640000	63056000	30115000	32941000	88072000	50305000	37767000	140790000	72387000	68399000	845780000	385240000	460530000	27928	2017	26444	174433;174434;174435;174436;174437;174438;174439;174440;174441	236003;236004;236005;236006;236007;236008;236009	236009			7	
KLYDIDVAK	2	Acetyl (K)	1105.6019	0.60192568	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	61.268	51.153	2	0.0012763	28173	160513_QHF_FH_JSI12Kac_4	105.4	71.308			0.44594	0.49343	64.056	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0619	1.268	33.674	2	0	Median	0.3467	0.33273	NaN	1	0	Median	0.43682	0.47941	4.0747	2	0	Median	49735000	30292000	19443000	0	0	0	24583000	10666000	13916000	10509000	8855300	1654100	14643000	10770000	3873000	27929	2017	26444	174442;174443;174444;174445;174446;174447	236010;236011;236012;236013;236014;236015;236016	236015	2048		7	
KLYVSNLGIGHTR	1	Acetyl (K)	1498.8256	0.82561145	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	1	0	0	1	By matching	By MS/MS		By MS/MS	16	0									4	1	2		1	59.692	50.535	2;3	3.2079E-05	27872	160513_QHF_FH_JSI10Kac_6	106.29	58.467			0.69613	0.81461	12.654	3	0	Plateau	0.92375	0.79711	NaN	1	0	Median	0.69172	0.81461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96129	1.0025	NaN	1	0	Median	216400000	144870000	71524000	48957000	29635000	19323000	132140000	94055000	38083000	0	0	0	35300000	21182000	14118000	27930	2241	26445	174448;174449;174450;174451	236017;236018	236018	2343		1	
KMAEAVQNHVK	2	Acetyl (K)	1295.6656	0.66560534	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.298	16.194	3	0.0010237	9997	160513_QHF_FH_JSI11Kac_6	71.219	57.256			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4604100	4604100	0	0	0	0	0	0	0	4604100	4604100	0	0	0	0	27931	4879	26446	174452	236019	236019	3256		1	
KMDIPAK	2	Unmodified	801.44186	0.44185998	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.643	14.706	2	0.016395	11482	160511_QHF_FH_JSI12i_3	63.565	47.411			1.236	1.2608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.236	1.2608	NaN	1	0	Median	245760000	114290000	131470000	0	0	0	0	0	0	0	0	0	245760000	114290000	131470000	27932	962	26447	174453	236020;236021	236020			2	
KMDPAEEDTNVYTEK	2	Unmodified	1768.7825	0.78254517	1413	P34741	SDC2	Syndecan-2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	29.942	29.234	3	5.6963E-08	24668	160511_QHF_FH_JSI12i_2	91.657	84.248			0.92812	0.87183	7.1337	2	1	Median	0.96271	0.82894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89476	0.91693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54480000	33462000	21018000	19889000	12150000	7739100	0	0	0	34592000	21313000	13279000	0	0	0	27933	1413	26448	174454;174455;174456;174457	236022;236023;236024;236025	236023			4	
KMDQPPQAK	2	Oxidation (M)	1057.5226	0.5226295	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	1	By matching	By matching	By MS/MS	By MS/MS	3.6	3.56	2	1	6				1			1	1	3	5	5.4761	4.6515	2;3	0.003849	2510	160511_QHF_FH_JSI12i_3	48.423	32.286			0.84559	0.87829	47.317	10	0	Median	0.85054	0.72396	NaN	1	0	Median	0.82552	0.96316	NaN	1	0	Median	1.0392	0.97812	11.104	3	0	Plateau	0.84067	0.86082	67.281	5	0	Median	1209200000	668640000	540560000	41032000	16384000	24647000	51598000	35175000	16423000	410710000	216040000	194680000	705860000	401040000	304820000	27934	1417	26449	174458;174459;174460;174461;174462;174463;174464;174465;174466;174467	236026;236027;236028;236029;236030;236031	236029		1074	5	
KMDQPPQAK	2	Unmodified	1041.5277	0.52771487	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.17		8	6					1		3	3	5	4	7.763	6.7849	2;3	5.1964E-05	5104	160511_QHF_FH_JSI12i_2	98.033	73.878			0.9742	0.98633	20.884	13	0	Median	1.3073	1.1111	13.726	2	0	Median	0.97606	1.2142	9.9704	2	0	Median	0.99744	0.9703	17.897	5	0	Median	0.82959	0.65759	20.398	4	0	Linear	5195000000	2513700000	2681300000	698020000	241320000	456710000	871630000	451770000	419860000	1488800000	699540000	789280000	2136500000	1121100000	1015400000	27935	1417	26449	174468;174469;174470;174471;174472;174473;174474;174475;174476;174477;174478;174479;174480;174481;174482	236032;236033;236034;236035;236036;236037;236038;236039;236040;236041;236042;236043;236044;236045;236046;236047;236048;236049;236050;236051	236034			20	
KMDQPPQAK	2	Acetyl (K);Oxidation (M)	1099.5332	0.53319418	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	1	0	1	1			By MS/MS		12.5	0.5					1	1						2		12.13	4.8634	2	0.049167	4888	160513_QHF_FH_JSI11Kac_3	51.066	24.682			1.031	0.98563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.031	0.98563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2134400	538880	1595600	0	0	0	0	0	0	2134400	538880	1595600	0	0	0	27936	1417	26449	174483;174484	236052;236053	236053	1380	1074	2	
KMDQPPQAK	2	Acetyl (K)	1083.5383	0.53827956	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	19.861	12.62	2	0.0095329	8418	160513_QHF_FH_JSI12Kac_3	87.639	35.785			0.62849	0.64449	28.406	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5446	0.52721	NaN	1	0	Median	0.7253	0.78786	NaN	1	0	Median	17386000	11655000	5731000	0	0	0	0	0	0	10637000	7635200	3001900	6748500	4019300	2729200	27937	1417	26449	174485;174486	236054;236055	236055	1380		1	
KMEDSVGCLETAEEVK	2	Unmodified	1823.8281	0.82811515	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	44.627	43.99	2;3	4.5433E-07	38688	160511_QHF_FH_JSI10i_2	143.86	120.94			1.0078	1.0798	49.112	6	3	Median	NaN	NaN	NaN	0	0	Median	0.8631	1.0199	NaN	1	1	Median	0.58098	0.57616	62.5	2	2	Median	1.2471	1.3632	10.791	3	0	Median	219180000	115230000	103950000	0	0	0	15871000	9167100	6703700	59908000	39262000	20646000	143400000	66797000	76602000	27938	1436	26450	174487;174488;174489;174490;174491;174492;174493;174494	236056;236057;236058;236059;236060;236061;236062;236063;236064;236065;236066;236067	236063			12	
KMEGVTNAVLHEVK	2	Unmodified	1553.8236	0.82356254	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	41.666	41.554	3	0.0006408	36507	160511_QHF_FH_JSI11i_3	67.136	61.634			0.44285	0.4169	73.364	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84592	0.77757	56.603	2	2	Median	0.2621	0.26247	33.889	2	2	Median	154600000	91693000	62908000	0	0	0	0	0	0	93647000	44884000	48762000	60954000	46808000	14145000	27939	4578	26451	174495;174496;174497;174498;174499	236068;236069;236070;236071;236072	236068			5	
KMEIDLK	2	Unmodified	875.47864	0.47863942	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			28.915	27.987	3	0.058776	24368	160511_QHF_FH_JSI10i_2	14.776	0			1.0893	1.322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0893	1.322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196710000	101850000	94858000	0	0	0	196710000	101850000	94858000	0	0	0	0	0	0	27940	1437	26452	174500	236073	236073			1	
KMELLQK	2	Unmodified	888.51027	0.5102739	5408	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.275	22.265	2	0.032883	18180	160511_QHF_FH_JSI12i_3	62.464	25.763			0.36516	0.36799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36516	0.36799	NaN	1	1	Median	56207000	39677000	16530000	0	0	0	0	0	0	0	0	0	56207000	39677000	16530000	27941	5408	26453	174501	236074	236074			1	
KMEMEMEQVFEMK	2	Unmodified	1688.7282	0.72820688	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	71.233	71.035	2;3	7.8423E-05	61540	160511_QHF_FH_JSI12i_3	96.103	79.471			1.1497	1.1957	16.683	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3544	1.2523	NaN	1	0	Median	1.0281	1.0483	18.6	2	0	Median	161460000	72275000	89186000	0	0	0	0	0	0	44181000	20046000	24135000	117280000	52229000	65051000	27942	2725	26454	174502;174503;174504	236075;236076;236077;236078	236075			4	
KMESDFEQK	2	Unmodified	1140.5121	0.51212439	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	11.888	11.948	2	4.4273E-05	9118	160511_QHF_FH_JSI12i_3	119.68	54.375			1.8999	1.8352	51.746	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9445	1.8352	NaN	1	1	Median	1.2012	1.2087	64.75	2	2	Median	235680000	89608000	146070000	0	0	0	0	0	0	60072000	21508000	38563000	175610000	68100000	107510000	27943	432	26455	174505;174506;174507	236079;236080;236081	236080			3	
KMETNYQR	1	Unmodified	1068.5022	0.50222841	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		7.1806	6.8227	2;3	0.0055713	4758	160511_QHF_FH_JSI10i_3	46.129	27.15			0.84071	0.91577	19.027	3	0	Plateau	1.5789	1.3308	NaN	1	0	Median	0.81634	0.91068	NaN	1	0	Median	1.1397	1.0724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112180000	49989000	62192000	34475000	14382000	20093000	39990000	19846000	20144000	37716000	15761000	21956000	0	0	0	27944	648	26456	174508;174509;174510;174511	236082;236083	236082			2	
KMEVASEK	2	Unmodified	920.46372	0.46371763	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	5.75	5.36		1	2					1			1	2	1	7.0628	4.5998	2;3	0.004621	4210	160511_QHF_FH_JSI11i_3	68.371	21.289			0.8783	0.94217	14.232	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78765	0.97704	NaN	1	0	Median	0.96746	0.9228	24.02	2	0	Median	0.92357	0.90855	NaN	1	0	Median	530430000	270210000	260230000	0	0	0	69131000	35429000	33702000	118930000	74847000	44079000	342380000	159930000	182450000	27945	5382	26457	174512;174513;174514;174515	236084;236085;236086;236087;236088;236089	236084			5	
KMFPGLAAPSLPK	2	Unmodified	1355.7635	0.76352847	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.058	63.772	2	0.006424	55026	160511_QHF_FH_JSI12i_3	52.693	42.461			0.8401	0.83699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8401	0.83699	NaN	1	0	Median	29942000	15493000	14449000	0	0	0	0	0	0	0	0	0	29942000	15493000	14449000	27946	727	26458	174516	236090	236090			1	
KMHIAALASAILSDPENNIK	2	Oxidation (M)	2151.1358	0.13578856	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	81.556	81.443	2	0.017639	72844	160511_QHF_FH_JSI11i_3	52.555	11.978			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71819000	71819000	0	0	0	0	0	0	0	40493000	40493000	0	31327000	31327000	0	27947	3748	26459	174517;174518	236091;236092	236091		2289	2	
KMNKRLVPRR	2	2 Acetyl (K);Oxidation (M)	1396.8085	0.8085216	2967	Q5TC82	RC3H1	Roquin-1	yes	yes	2	0	1	4		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	104.41	96.218	2	0.017839	52180	160513_QHF_FH_JSI12Kac_6	37.191	21.931			1.0181	0.95583	6.9201	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.823	0.97384	NaN	1	0	Median	1.0181	0.95583	NaN	1	0	Median	1.0227	1.0865	NaN	1	0	Median	674570000	322130000	352440000	0	0	0	166480000	94920000	71556000	376000000	167550000	208440000	132100000	59656000	72443000	27948	2967	26460	174519;174520;174521	236093;236094;236095	236094	2726;2727	2175	3	
KMPLPLK	2	Unmodified	825.51463	0.51463099	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	34.524	33.748	3	0.020916	29179	160511_QHF_FH_JSI11i_3	34.824	11.805			1.7412	1.6424	76.922	4	2	Linear	1.9478	1.5785	NaN	1	0	Median	0.71879	0.84953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58978	0.60626	107.91	2	1	Median	173420000	78219000	95202000	65115000	20608000	44507000	26473000	15446000	11027000	0	0	0	81833000	42165000	39668000	27949	4982	26461	174522;174523;174524;174525;174526;174527;174528	236096;236097;236098;236099;236100;236101;236102;236103;236104	236096			9	
KMPPLPVTLALGAFLNHWR	1	Unmodified	2160.203	0.20302068	3941	Q969M1	TOMM40L	Mitochondrial import receptor subunit TOM40B	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			96.407	90.686	3;4	4.8064E-13	52529	160513_QHF_FH_JSI10Kac_6	122.22	117.96			0.69085	0.81887	37.975	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69085	0.81887	37.975	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176820000	97618000	79203000	0	0	0	176820000	97618000	79203000	0	0	0	0	0	0	27950	3941	26462	174529;174530	236105;236106	236105			2	
KMPQYQK	2	Unmodified	921.47422	0.47422274	1962;2716	Q15833;P61764	STXBP2;STXBP1	Syntaxin-binding protein 2;Syntaxin-binding protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	10.629	10.316	2;3	0.0081942	7876	160511_QHF_FH_JSI9i_3	47.067	30.291			1.0258	1.0571	14.596	4	0	Median	1.3247	1.077	NaN	1	0	Median	0.96294	1.1168	NaN	1	0	Median	1.0928	1.0377	NaN	1	0	Median	0.79269	0.80911	NaN	1	0	Median	472790000	250420000	222380000	133360000	62273000	71091000	118240000	61943000	56300000	83598000	45502000	38096000	137590000	80698000	56889000	27951	2716;1962	26463	174531;174532;174533;174534;174535	236107;236108;236109;236110;236111	236110			5	
KMSAAEAVK	2	Acetyl (K)	975.50592	0.5059168	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		26.58	18.711	2	0.0055045	11925	160513_QHF_FH_JSI11Kac_4	79.489	40.467			0.055641	0.055955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.055641	0.055955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4218600	3930500	288090	0	0	0	0	0	0	4218600	3930500	288090	0	0	0	27952	1085	26464	174536	236112	236112	936		1	
KMSEHYWTPQSNVSNETSTGK	2	Acetyl (K)	2452.0965	0.09650252	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.17	42.445	3	0.0016438	23014	160513_QHF_FH_JSI11Kac_6	71.148	57.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4108500	4108500	0	0	0	0	0	0	0	4108500	4108500	0	0	0	0	27953	5468	26465	174537	236113	236113	3437		1	
KNDIPFELR	1	Unmodified	1130.6084	0.60840804	1362	P30711	GSTT1	Glutathione S-transferase theta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	46.957	46.495	2;3	0.0038597	40799	160511_QHF_FH_JSI11i_3	43.651	25.742			0.92439	0.92168	29.025	6	1	Median	0.97745	0.85115	NaN	1	0	Median	0.80313	0.97095	NaN	1	0	Median	0.99557	0.93742	40.549	3	1	Plateau	0.93407	0.94912	NaN	1	0	Median	426360000	242580000	183780000	31720000	15130000	16590000	50818000	31279000	19539000	242420000	143720000	98703000	101400000	52450000	48951000	27954	1362	26466	174538;174539;174540;174541;174542;174543	236114;236115;236116;236117;236118;236119	236114			4	
KNDIYGED	1	Unmodified	952.41379	0.41379055	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.994	12.734	2	0.0067508	10249	160511_QHF_FH_JSI11i_1	61.962	50.599			1.0334	1.0826	10.995	3	1	Median	NaN	NaN	NaN	0	0	Median	0.83601	0.9856	NaN	1	0	Median	1.2666	1.2271	NaN	1	0	Median	1.0334	1.0826	NaN	1	1	Median	521360000	273380000	247980000	0	0	0	192880000	98247000	94635000	166640000	85239000	81403000	161840000	89892000	71945000	27955	1702	26467	174544;174545;174546	236120;236121;236122	236120			3	
KNDLVDADNK	2	Unmodified	1130.5568	0.5567664	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		10.746	10.364	2	0.0092352	7851	160511_QHF_FH_JSI11i_2	56.432	34.925			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27956	1512	26468	174547;174548	236123;236124	236124			2	
KNDMANMYVLLR	1	Unmodified	1466.7374	0.73739007	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	63.138	62.947	2;3	0.00031482	55871	160511_QHF_FH_JSI11i_3	75.088	68.389			1.7709	1.8017	42.084	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4735	1.3626	NaN	1	1	Median	2.3296	2.3696	38.747	2	2	Median	248910000	83528000	165390000	0	0	0	0	0	0	113960000	41931000	72029000	134950000	41598000	93357000	27957	2454	26469	174549;174550;174551;174552	236125;236126;236127;236128	236125			4	
KNDMDEPPSGDFGGDEEK	2	Unmodified	1965.7898	0.78981539	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	31.118	30.775	3	4.305E-06	27422	160511_QHF_FH_JSI10i_1	91.589	88.692			0.95161	0.94766	21.545	4	2	Median	NaN	NaN	NaN	0	0	Median	0.74688	0.88548	NaN	1	0	Median	1.164	1.1258	31.551	2	2	Median	0.96377	0.99712	NaN	1	0	Median	192830000	108370000	84462000	0	0	0	62937000	38529000	24408000	88502000	45424000	43078000	41392000	24416000	16976000	27958	2578	26470	174553;174554;174555;174556	236129;236130;236131;236132;236133;236134	236134			6	
KNDPLPISTVGTR	1	Unmodified	1396.7674	0.76742787	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.201	38.201	3	0.027839	33469	160511_QHF_FH_JSI11i_3	33.842	25.329			0.5868	0.54039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5868	0.54039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20535000	13219000	7315600	0	0	0	0	0	0	20535000	13219000	7315600	0	0	0	27959	5039	26471	174557	236135;236136	236135			2	
KNEEFKK	3	Unmodified	921.49198	0.4919813	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	4.5567	4.6492	3	0.052638	2134	160511_QHF_FH_JSI12i_3	43.808	11.488			0.3013	0.30359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3013	0.30359	NaN	1	1	Median	174630000	136910000	37721000	0	0	0	0	0	0	0	0	0	174630000	136910000	37721000	27960	5412	26472	174558	236137	236137			1	
KNEELEQLYQDQEVPKPK	3	Unmodified	2214.1168	0.11682726	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	48.237	47.937	3;4	8.5034E-07	40885	160511_QHF_FH_JSI12i_3	112.3	97.839			0.68174	0.68681	41.572	4	3	Median	NaN	NaN	NaN	0	0	Median	0.44	0.52974	NaN	1	1	Median	1.1081	1.0323	20.902	2	1	Median	0.48521	0.50769	NaN	1	1	Median	289610000	155280000	134340000	0	0	0	25825000	18369000	7456000	241830000	120420000	121410000	21957000	16491000	5466200	27961	5048	26473	174559;174560;174561;174562	236138;236139;236140;236141;236142	236142			5	
KNEESQEIQK	2	Unmodified	1231.6044	0.60444487	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	5.9054	5.5156	2	0.0005305	3366	160511_QHF_FH_JSI11i_2	72.006	44.263			0.81964	0.85848	24.131	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.734	0.72381	NaN	1	0	Median	0.91527	1.0182	NaN	1	0	Median	75068000	42926000	32142000	0	0	0	0	0	0	47105000	29004000	18101000	27963000	13923000	14041000	27962	475	26474	174563;174564	236143;236144	236144			2	
KNEFQGELEK	2	Unmodified	1220.6037	0.60371659	3592	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	20.086	20.1	2;3	0.00038301	16350	160511_QHF_FH_JSI12i_3	76.465	38.989			1.121	1.0862	26.673	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.121	1.0862	26.673	2	0	Median	68186000	32500000	35685000	0	0	0	0	0	0	0	0	0	68186000	32500000	35685000	27963	3592	26475	174565;174566	236145;236146;236147	236146			3	
KNEGLTWPELVIGDK	2	Unmodified	1697.8988	0.89883598	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	79.578	78.742	2;3	0.00027876	69958	160511_QHF_FH_JSI10i_2	64.52	51.688			0.76844	0.84593	31.212	3	1	Median	1.2326	1.0844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57428	0.58326	NaN	1	0	Median	0.76844	0.84593	NaN	1	0	Median	45567000	22858000	22710000	16902000	7128700	9773700	0	0	0	20157000	12094000	8063000	8508000	3635200	4872900	27964	4225	26476	174567;174568;174569;174570;174571;174572	236148;236149;236150;236151;236152;236153	236152			6	
KNEIMVAPDK	2	Unmodified	1143.5958	0.59579444	4891	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	3	3	3	20.884	20.443	2;3	1.285E-05	16588	160511_QHF_FH_JSI12i_3	113.63	76.438			0.74065	0.84465	39.238	8	1	Median	NaN	NaN	NaN	0	0	Median	0.48345	0.57412	50.045	2	1	Median	1.0014	0.91846	56.481	3	0	Median	0.80666	0.8723	17.325	3	0	Median	1135800000	640190000	495610000	0	0	0	129000000	73135000	55868000	397140000	213280000	183870000	609660000	353780000	255880000	27965	4891	26477	174573;174574;174575;174576;174577;174578;174579;174580;174581;174582	236154;236155;236156;236157;236158;236159;236160;236161;236162;236163;236164	236163			9	
KNEIMVAPDK	2	Oxidation (M)	1159.5907	0.59070906	4891	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	14.017	14.091	3	0.011147	10926	160511_QHF_FH_JSI12i_3	43.68	31.814			1.5914	1.5927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5914	1.5927	NaN	1	1	Median	89243000	43025000	46219000	0	0	0	0	0	0	0	0	0	89243000	43025000	46219000	27966	4891	26477	174583	236165	236165		2548	1	
KNELFSNL	1	Unmodified	963.50255	0.50254598	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	52.633	51.677	2	0.033533	44495	160511_QHF_FH_JSI12i_2	41.025	22.294			0.96998	1.027	12.5	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93072	0.94016	NaN	1	0	Median	1.0109	1.122	NaN	1	0	Median	507950000	259150000	248790000	0	0	0	0	0	0	301390000	153760000	147640000	206550000	105400000	101150000	27967	198	26478	174584;174585	236166	236166			1	
KNEPIFK	2	Unmodified	874.49125	0.49125301	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	13.006	12.752	3	0.014625	10194	160511_QHF_FH_JSI11i_3	44.447	0			1.0129	1.1335	23.52	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0129	1.1335	NaN	1	0	Median	1.6925	1.5609	NaN	1	1	Median	0.95429	0.98677	NaN	1	0	Median	314280000	176250000	138030000	0	0	0	39478000	20912000	18566000	90381000	45475000	44906000	184420000	109860000	74558000	27968	238	26479	174586;174587;174588	236167;236168	236167			2	
KNEPPLTCPYSLK	2	Unmodified	1545.7861	0.78611441	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			6									3	3	40.727	40.569	2;3	0.00015689	34636	160511_QHF_FH_JSI12i_3	100.93	76.093			1.1598	1.195	31.844	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70374	0.66339	NaN	1	1	Median	1.1722	1.217	6.8857	3	2	Median	355300000	173490000	181810000	0	0	0	0	0	0	57777000	33289000	24488000	297530000	140200000	157330000	27969	5285	26480	174589;174590;174591;174592;174593;174594	236169;236170;236171;236172;236173;236174;236175	236173			7	
KNEWPLDKTRLTADVTK	3	Unmodified	2014.0847	0.084739267	4031	Q96DT5	DNAH11	Dynein heavy chain 11, axonemal	yes	yes	0	0	0	3				By MS/MS	12	0					1								1	51.989	42.657	7	0.060737	19394	160513_QHF_FH_JSI12Kac_2	3.7796	0.23119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42577000	0	42577000	0	0	0	0	0	0	0	0	0	42577000	0	42577000	27970	4031	26481	174595	236176	236176			1	
KNFEWVAER	1	Acetyl (K)	1219.5986	0.59857163	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0.632							1	3	1		2	2	1	66.126	55.593	2	0.0047302	30097	160513_QHF_FH_JSI11Kac_5	93.096	62.532			0.81289	0.9296	56.031	5	0	Median	NaN	NaN	NaN	0	0	Median	0.94993	1.1153	20.929	2	0	Median	0.40057	0.38972	10.94	2	0	Median	0.87358	0.9296	NaN	1	0	Median	33169000	22065000	11104000	0	0	0	6446500	3308600	3137900	23120000	16599000	6521300	3602600	2157900	1444700	27971	1206	26482	174596;174597;174598;174599;174600	236177;236178	236178	1077		2	
KNFLHLTDK	2	Acetyl (K)	1156.6241	0.6240581	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			54.706	46.143	3	0.0033524	25411	160513_QHF_FH_JSI10Kac_6	64.82	32.5			6.6052	7.8491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.6052	7.8491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8056000	1188500	6867500	0	0	0	8056000	1188500	6867500	0	0	0	0	0	0	27972	4152	26483	174601	236179	236179	3055		1	
KNGFVVLK	2	Unmodified	903.55419	0.55418762	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	27.073	26.303	2;3	0.0027462	21500	160511_QHF_FH_JSI9i_3	61.999	10.145			1.0296	1.1786	58.825	7	1	Median	3.2131	2.6139	68.825	2	1	Median	1.0296	1.1786	0	2	0	Median	0.78981	0.75581	0	2	0	Median	1.0967	1.131	NaN	1	0	Median	605330000	234160000	371170000	278760000	74975000	203780000	98391000	44883000	53508000	129490000	69848000	59645000	98684000	44456000	54228000	27973	2060	26484	174602;174603;174604;174605;174606;174607;174608	236180;236181;236182;236183;236184	236182			5	
KNGQLAASVETAGDSELFLMK	2	Unmodified	2208.1096	0.10963339	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		74.847	74.847	3	9.3833E-11	66761	160511_QHF_FH_JSI11i_3	112.55	104.36			0.75472	0.68472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75472	0.68472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33154000	17476000	15679000	0	0	0	0	0	0	33154000	17476000	15679000	0	0	0	27974	2751	26485	174609;174610	236185;236186;236187;236188	236185			4	
KNIHPWVK	2	Acetyl (K)	1062.5974	0.59744942	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	41.9	32.509	3	0.042432	17071	160513_QHF_FH_JSI12Kac_6	34.387	22.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3345700	3345700	0	0	0	0	0	0	0	0	0	0	3345700	3345700	0	27975	1372	26486	174611	236189	236189			1	
KNIILEEGK	2	Unmodified	1042.6023	0.60226003	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	21.904	21.596	2;3	0.00071034	18174	160511_QHF_FH_JSI11i_3	53.751	18.24			1.1054	1.0509	39.516	6	2	Median	0.69621	0.60712	NaN	1	1	Median	0.38101	0.47105	NaN	1	1	Median	1.1227	1.0509	5.4911	2	0	Median	1.1696	1.1933	3.1764	2	0	Median	834350000	462880000	371470000	31515000	18830000	12685000	47635000	34610000	13025000	259130000	151530000	107600000	496070000	257910000	238150000	27976	1236	26487	174612;174613;174614;174615;174616;174617	236190;236191;236192;236193;236194;236195	236191			6	
KNIILEEGK	2	Acetyl (K)	1084.6128	0.61282471	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	51.622	41.371	2	0.0054969	22301	160513_QHF_FH_JSI10Kac_3	90.906	39.839			0.31828	0.30274	70.472	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.2911	1.5363	0.60086	2	0	Median	0.38363	0.36983	NaN	1	0	Median	0.58	0.62256	NaN	1	0	Median	86522000	56660000	29863000	0	0	0	28543000	14138000	14405000	40904000	31358000	9546000	17075000	11163000	5912100	27977	1236	26487	174618;174619;174620;174621	236196;236197;236198;236199	236199	1125		4	
KNKLQQQVR	2	2 Acetyl (K)	1224.6939	0.693869	5855				yes	yes	2	0	0	2		By MS/MS	By MS/MS		14	0							3				2	1		35.072	25.652	2	0.026603	15113	160513_QHF_FH_JSI10Kac_4	73.931	30.489	+		1.6879	2.0086	0.21224	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.6879	2.0086	0	2	0	Median	2.0185	2.016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11806000	4516100	7289900	0	0	0	8361900	3408500	4953400	3444000	1107500	2336500	0	0	0	27978	5855	26488	174622;174623;174624	236200	236200	3583;3584		1	
KNLQYYDISAK	2	Acetyl (K)	1383.7034	0.70343063	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	61.353	50.545	2	0.00063619	28642	160513_QHF_FH_JSI11Kac_4	95.573	76.793			0.55716	0.5911	79.632	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1162	1.3146	NaN	1	0	Median	0.27197	0.26737	NaN	1	0	Median	0.55716	0.5911	NaN	1	0	Median	16303000	10057000	6246100	0	0	0	6282700	3014800	3267900	6953600	5188800	1764800	3066300	1852900	1213400	27979	2021	26489	174625;174626;174627	236201;236202;236203;236204	236203	2060		4	
KNLQYYDISAK	2	Unmodified	1341.6929	0.69286595	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.031	32.938	2	0.023407	27851	160511_QHF_FH_JSI12i_3	54.416	34.113			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10019000	0	10019000	0	0	0	0	0	0	0	0	0	10019000	0	10019000	27980	2021	26489	174628	236205	236205			1	
KNLWGIK	2	Unmodified	857.51232	0.51232281	5304	Q9UHL0	DDX25	ATP-dependent RNA helicase DDX25	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			10.546	9.9119	3	0.026836	7462	160511_QHF_FH_JSI10i_3	31.289	0.67731			0.46358	0.52434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46358	0.52434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129710000	86243000	43468000	0	0	0	129710000	86243000	43468000	0	0	0	0	0	0	27981	5304	26490	174629	236206	236206			1	
KNMFVYQERATK	2	Acetyl (K);Oxidation (M)	1571.7766	0.77661235	2931	Q5T011	SZT2	Protein SZT2	yes	yes	1	0	1	2				By MS/MS	14	0							1						1	23.649	16.052	3	0.034348	10107	160513_QHF_FH_JSI12Kac_4	35.737	22.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27982	2931	26491	174630	236207	236207			1	
KNNKKTNKNK	5	4 Acetyl (K)	1383.747	0.74702678	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12.6	0.904				2	4	6	2				5	4	5	15.482	8.141	2;3	2.6601E-06	6406	160513_QHF_FH_JSI12Kac_3	94.465	61.859			0.90564	0.98644	6.1758	14	0	Median	NaN	NaN	NaN	0	0	Median	0.80863	0.97427	3.7131	5	0	Median	0.99264	0.97525	8.0877	4	0	Linear	0.90255	0.98513	5.9643	5	0	Median	365360000	196310000	169040000	0	0	0	154980000	89183000	65792000	71871000	37086000	34785000	138510000	70043000	68468000	27983	3886	26492	174631;174632;174633;174634;174635;174636;174637;174638;174639;174640;174641;174642;174643;174644	236208;236209;236210;236211;236212;236213;236214;236215;236216;236217;236218;236219;236220;236221;236222;236223;236224;236225;236226;236227;236228	236220	2977;2978;2979;2980;2981		21	
KNNKKTNKNK	5	3 Acetyl (K)	1341.7365	0.7364621	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	3	0	0	4		By MS/MS	By MS/MS	By matching	15	0								3			1	1	1	6.9285	-2.5018	3	0.013134	2373	160513_QHF_FH_JSI11Kac_5	53.211	42.601			1.0809	1.1026	9.5393	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0809	1.3162	NaN	1	0	Median	1.1253	1.1026	NaN	1	0	Median	1.0105	1.1329	NaN	1	0	Median	24922000	12847000	12075000	0	0	0	6772800	3635900	3136900	11277000	5594300	5682800	6872000	3617000	3255000	27984	3886	26492	174645;174646;174647	236229;236230	236229	2977;2978;2979;2980;2981		1	
KNNKKTSKNK	5	4 Acetyl (K)	1356.7361	0.73612775	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12.5	0.843				2	4	6	1				7	3	3	16.42	8.9327	2;3	4.6707E-05	5176	160513_QHF_FH_JSI11Kac_2	94.297	58.353			0.8622	1.0228	11.901	13	0	Median	NaN	NaN	NaN	0	0	Median	0.85901	1.0228	7.4944	7	0	Median	1.0701	1.059	1.2514	3	0	Median	0.86161	0.94551	12.138	3	0	Plateau	574560000	315230000	259330000	0	0	0	216520000	117070000	99451000	139870000	76181000	63690000	218170000	121980000	96190000	27985	2285	26493	174648;174649;174650;174651;174652;174653;174654;174655;174656;174657;174658;174659;174660	236231;236232;236233;236234;236235;236236;236237;236238;236239;236240;236241;236242;236243;236244	236231	2388;2390;2394;2395;2396		14	
KNNKKTSKNK	5	3 Acetyl (K)	1314.7256	0.72556306	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.737							2	4	3	2	3	1	3	7.5237	-0.95438	3	6.0454E-06	2593	160513_QHF_FH_JSI11Kac_5	106.29	76.747			1.0907	1.1259	111.9	9	1	Median	1.4882	1.2628	6.1528	2	0	Median	0.93058	1.1139	17.278	3	0	Median	1.132	1.1259	NaN	1	0	Median	0.79128	0.85755	204.61	3	1	Median	98372000	47282000	51090000	19918000	7164200	12753000	29014000	15421000	13593000	20234000	11283000	8951100	29207000	13414000	15793000	27986	2285	26493	174661;174662;174663;174664;174665;174666;174667;174668;174669	236245;236246;236247;236248;236249;236250;236251;236252;236253;236254;236255	236250	2388;2390;2394;2395;2396		11	
KNPASLPLTQAALK	2	Unmodified	1450.8508	0.85076357	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	49.168	48.03	3	9.8974E-06	39342	160511_QHF_FH_JSI9i_3	80.746	77.704			0.87441	0.84954	37.585	3	3	Plateau	1.1139	0.88882	NaN	1	1	Median	0.72791	0.84954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6417	1.6642	NaN	1	1	Median	659280000	322110000	337170000	256350000	125360000	130980000	234320000	131680000	102640000	0	0	0	168610000	65062000	103550000	27987	2409	26494	174670;174671;174672;174673;174674;174675;174676;174677	236256;236257;236258;236259;236260;236261;236262;236263	236261			8	
KNPDSQYGELIEK	2	Unmodified	1519.7518	0.75183739	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	33.855	33.745	2	0.0002304	29791	160511_QHF_FH_JSI10i_2	73.435	46.728			0.65759	0.70643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65759	0.70643	NaN	1	1	Median	19981000	12653000	7328200	0	0	0	0	0	0	0	0	0	19981000	12653000	7328200	27988	1342	26495	174678;174679	236264;236265	236264			2	
KNPEMEDLPSK	2	Unmodified	1286.6177	0.61765209	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	1				By MS/MS	2.67	0.471		1	2										3	23.932	23.304	2;3	0.006956	19188	160511_QHF_FH_JSI12i_3	57.836	45.22			1.1605	1.2396	14.583	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1605	1.2396	14.583	2	0	Median	113940000	50714000	63229000	0	0	0	0	0	0	0	0	0	113940000	50714000	63229000	27989	285	26496	174680;174681;174682	236266;236267	236266			1	
KNPEVPVNFAEFSK	2	Unmodified	1604.8199	0.81985738	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							2	2	5	3	62.834	62.255	2;3	2.2226E-05	54219	160511_QHF_FH_JSI11i_2	94.461	89.391			0.9675	0.9915	11.488	12	1	Median	1.0263	0.87476	11.223	2	0	Median	0.82668	1.0163	11.637	2	0	Median	1.0238	0.99505	14.892	5	1	Median	0.99198	1.0136	1.5289	3	0	Plateau	3070700000	1528900000	1541700000	243400000	123050000	120350000	359100000	205620000	153490000	1290500000	618030000	672470000	1177700000	582230000	595430000	27990	278	26497	174683;174684;174685;174686;174687;174688;174689;174690;174691;174692;174693;174694	236268;236269;236270;236271;236272;236273;236274;236275;236276;236277;236278;236279;236280;236281;236282;236283;236284;236285;236286;236287	236277			20	
KNPGVGNGDDEAAELMQQVNVLK	2	Unmodified	2425.1907	0.19073726	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	80.705	80.395	3	4.4291E-24	71676	160511_QHF_FH_JSI11i_3	158	149.29			0.83655	0.80145	24.6	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.43219	0.53686	NaN	1	0	Median	0.77579	0.71781	NaN	1	0	Median	0.87456	0.87555	NaN	1	0	Median	261650000	147750000	113900000	0	0	0	24409000	15936000	8473000	114460000	61876000	52583000	122780000	69938000	52847000	27991	2698	26498	174695;174696;174697	236288;236289;236290;236291;236292;236293	236289			5	
KNPMVETLGTVLQLK	2	Unmodified	1669.9437	0.94367768	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			87.254	86.086	3	1.0474E-05	72029	160511_QHF_FH_JSI10i_3	81.619	69.473			1.0214	0.99953	8.0754	2	2	Median	1.2826	1.0583	NaN	1	1	Median	0.81335	0.94405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65098000	32333000	32765000	32396000	13913000	18483000	32702000	18420000	14282000	0	0	0	0	0	0	27992	2239	26499	174698;174699;174700;174701;174702	236294;236295;236296;236297;236298	236295			5	
KNPQAVLDVLK	2	Unmodified	1223.7238	0.72377215	2366	Q13177;O75914	PAK2;PAK3	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	2	1	6	50.885	49.978	2;3	4.1055E-05	42616	160511_QHF_FH_JSI12i_3	133.89	96.702			0.39932	0.36781	11.858	4	4	Linear	0.583	0.4644	NaN	1	1	Median	0.38835	0.44741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37575	0.38477	11.3	2	2	Median	462470000	315810000	146660000	52842000	27485000	25357000	58936000	41145000	17791000	0	0	0	350690000	247180000	103510000	27993	2366	26500	174703;174704;174705;174706;174707;174708;174709;174710;174711;174712;174713	236299;236300;236301;236302;236303;236304;236305;236306;236307;236308;236309	236305			11	
KNPSSPLYTTLGVITK	2	Unmodified	1717.9614	0.96143623	699	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	67.652	67.503	3	3.965E-06	60028	160511_QHF_FH_JSI11i_3	115.31	102.48			0.74759	0.73865	19.594	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90386	0.84841	NaN	1	1	Median	0.61833	0.64308	NaN	1	1	Median	280440000	163090000	117350000	0	0	0	0	0	0	145720000	78476000	67245000	134720000	84613000	50108000	27994	699	26501	174714;174715;174716;174717	236310;236311;236312;236313	236310			4	
KNQELEVVR	1	Unmodified	1113.6142	0.6142217	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.274	15.274	2	0.012471	12547	160511_QHF_FH_JSI11i_3	47.853	22.279			0.85564	0.81096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85564	0.81096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25854000	11651000	14203000	0	0	0	0	0	0	25854000	11651000	14203000	0	0	0	27995	2516	26502	174718	236314	236314			1	
KNSPQEEVELK	2	Unmodified	1299.667	0.66704513	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	17.283	17.205	2	0.00033427	13720	160511_QHF_FH_JSI12i_3	87.184	42.867			0.77376	0.75972	57.304	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4006	1.3326	25.982	2	2	Median	0.51331	0.52047	NaN	1	1	Median	76657000	38849000	37808000	0	0	0	0	0	0	42176000	17438000	24737000	34481000	21411000	13071000	27996	4326	26503	174719;174720;174721;174722	236315;236316;236317;236318	236318			4	
KNSPQEEVELKK	3	Unmodified	1427.762	0.76200815	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		14.413	13.947	3	0.00073788	11146	160511_QHF_FH_JSI11i_3	77.204	56.823			0.47389	0.48824	15.009	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4637	0.54291	NaN	1	1	Median	0.48431	0.43908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60326000	36536000	23790000	0	0	0	25526000	16700000	8825200	34800000	19836000	14964000	0	0	0	27997	4326	26504	174723;174724	236319;236320	236319			2	
KNSVVEASEAAYK	2	Unmodified	1394.7042	0.70415892	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		2	4							2		2	2	21.296	20.977	2;3	3.0067E-05	17590	160511_QHF_FH_JSI11i_3	70.889	59.449			0.97171	0.92926	21.994	6	1	Median	1.2418	1.073	22.641	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74906	0.70607	0.85149	2	0	Median	0.97171	0.96582	3.1508	2	0	Median	508660000	231840000	276820000	54996000	25694000	29301000	0	0	0	171890000	97485000	74408000	281770000	108660000	173110000	27998	2224	26505	174725;174726;174727;174728;174729;174730	236321;236322;236323;236324;236325;236326;236327;236328;236329;236330	236323			10	
KNTIMFDDIGR	1	Unmodified	1308.6496	0.64962092	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		46.457	45.188	2;3	9.5856E-05	37841	160511_QHF_FH_JSI10i_3	62.924	54.619			1.0541	1.082	19.795	5	1	Median	1.4233	1.1841	12.75	2	0	Median	0.857	0.98985	30.392	2	0	Median	0.98893	0.9399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	224440000	94931000	129510000	65731000	25710000	40021000	75229000	34353000	40876000	83484000	34868000	48616000	0	0	0	27999	3791	26506	174731;174732;174733;174734;174735	236331;236332;236333;236334	236333			3	
KNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGK	3	Unmodified	3966.0754	0.07536714	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	97.295	89.105	4;5	1.8691E-114	53012	160513_QHF_FH_JSI10Kac_6	219.35	200.36			0.70555	0.74803	28.549	6	0	Median	NaN	NaN	NaN	0	0	Median	0.60861	0.72468	10.028	2	0	Median	0.58952	0.55714	36.125	2	0	Median	0.88724	0.93362	2.0281	2	0	Median	1525300000	902220000	623030000	0	0	0	640270000	400700000	239570000	486500000	294230000	192270000	398480000	207290000	191190000	28000	2741	26507	174736;174737;174738;174739;174740;174741	236335;236336;236337;236338;236339;236340;236341;236342	236342			8	
KPAAAAAPGTAEK	2	Unmodified	1181.6404	0.64043645	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.33	3	6	8				4	2		4	6	7	6	7.4315	5.1953	2;3	0.00040349	4318	160511_QHF_FH_JSI11i_3	69.451	44.313			1.0036	0.93517	20.585	22	2	Median	1.1134	0.93517	7.031	4	0	Median	0.65625	0.78183	10.612	6	1	Median	1.0892	1.0512	14.979	6	1	Median	0.7938	0.79723	19.233	6	0	Linear	4315100000	2156700000	2158400000	502920000	231060000	271870000	1008400000	539710000	468710000	1327200000	579500000	747660000	1476600000	806440000	670120000	28001	1706	26508	174742;174743;174744;174745;174746;174747;174748;174749;174750;174751;174752;174753;174754;174755;174756;174757;174758;174759;174760;174761;174762;174763;174764	236343;236344;236345;236346;236347;236348;236349;236350;236351;236352;236353;236354;236355;236356;236357;236358;236359;236360;236361;236362;236363;236364;236365;236366;236367;236368	236344			26	
KPAAAAGAKK	3	Acetyl (K)	953.56581	0.56581494	969	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	0	2		By matching	By matching	By MS/MS	15	0								3			1	1	1	5.5911	-3.8579	3	0.011024	1722	160513_QHF_FH_JSI12Kac_5	56.404	30.021			0.63411	0.57364	40.455	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89876	1.0775	NaN	1	0	Median	0.89628	0.87788	NaN	1	0	Median	0.44862	0.49377	NaN	1	0	Median	35983000	20810000	15173000	0	0	0	7676800	3935200	3741700	12628000	6068600	6559300	15678000	10807000	4871700	28002	969	26509	174765;174766;174767	236369	236369	737		1	
KPAAAGVK	2	Unmodified	740.45447	0.45447358	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	1	3		1.2338	1.0537	2	0.0095029	1141	160511_QHF_FH_JSI9i_3	56.122	34.575			1.1924	0.96684	34.815	5	1	Median	1.1924	0.96684	NaN	1	0	Median	1.306	1.5334	NaN	1	0	Median	0.82753	0.78167	30.153	3	1	Median	NaN	NaN	NaN	0	0	Median	1431200000	698500000	732690000	385240000	148940000	236300000	200610000	96385000	104220000	845340000	453180000	392170000	0	0	0	28003	1097	26510	174768;174769;174770;174771;174772	236370;236371;236372;236373;236374;236375;236376;236377;236378;236379	236379			10	
KPAAAGVKK	3	Unmodified	868.54944	0.54943659	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			1.4561	1.0171	3	0.011617	643	160511_QHF_FH_JSI10i_3	46.158	21.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28004	1097	26511	174773	236380	236380			1	
KPAAATVTK	2	Unmodified	885.52837	0.5283668	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.42	3	6	8						4	5	6	5	5	5.3472	3.6797	2;3	8.128E-06	2706	160511_QHF_FH_JSI12i_3	85.622	62.909			0.81183	0.83611	23.645	21	4	Median	1.0859	0.90303	19.302	5	1	Median	0.74769	0.83063	15.439	6	1	Median	0.8686	0.83095	25.342	5	1	Median	0.67257	0.66822	29.127	5	1	Median	63737000000	29315000000	34422000000	17616000000	6440200000	11176000000	17811000000	9240500000	8570600000	10394000000	4457900000	5936100000	17916000000	9176400000	8739200000	28005	1099	26512	174774;174775;174776;174777;174778;174779;174780;174781;174782;174783;174784;174785;174786;174787;174788;174789;174790;174791;174792;174793;174794	236381;236382;236383;236384;236385;236386;236387;236388;236389;236390;236391;236392;236393;236394;236395;236396;236397;236398;236399;236400;236401;236402;236403;236404;236405;236406;236407;236408;236409;236410;236411	236406			31	
KPAAATVTKK	3	Unmodified	1013.6233	0.62332982	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	4.6539	4.4329	3	0.00052606	2196	160511_QHF_FH_JSI12i_3	84.687	65.709			0.89615	0.91967	14.578	4	4	Median	1.268	1.0361	NaN	1	1	Median	0.76178	0.85096	NaN	1	1	Median	1.0542	0.99393	NaN	1	1	Median	0.71946	0.75481	NaN	1	1	Median	9647900000	4491200000	5156700000	2419000000	1030300000	1388700000	2824500000	1459600000	1364900000	2077400000	780820000	1296600000	2327000000	1220500000	1106500000	28006	1099	26513	174795;174796;174797;174798;174799;174800;174801;174802	236412;236413;236414;236415;236416;236417;236418;236419	236418			8	
KPAAATVTKK	3	Acetyl (K)	1055.6339	0.63389451	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.373								5	1	2	1	1	2	11.362	2.5839	3	0.0044562	4062	160513_QHF_FH_JSI10Kac_5	66.595	39.923			1.0936	1.2044	24.647	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0116	1.23	NaN	1	0	Median	1.1823	1.1793	NaN	1	0	Median	1.1074	1.2033	42.586	2	0	Median	30669000	16683000	13986000	0	0	0	6855800	4370200	2485700	8685700	3821800	4863900	15128000	8491500	6636400	28007	1099	26513	174803;174804;174805;174806;174807;174808	236420;236421;236422;236423;236424;236425;236426;236427;236428	236427	949		9	
KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR	1	Unmodified	3270.686	0.68595344	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		100.67	100.56	3;4	1.2984E-26	83148	160511_QHF_FH_JSI10i_3	106.61	104.45			0.96523	0.92868	5.7138	5	1	Median	1.1214	0.93904	NaN	1	0	Median	0.74546	0.87326	8.7017	2	1	Median	0.9832	0.92689	2.163	2	0	Median	NaN	NaN	NaN	0	0	Median	501670000	255700000	245970000	33755000	18703000	15051000	174640000	85891000	88747000	293280000	151110000	142170000	0	0	0	28008	4919	26514	174809;174810;174811;174812;174813	236429;236430;236431;236432;236433;236434;236435;236436	236434			8	
KPAAVLKPSDWEK	3	Unmodified	1467.8086	0.80856441	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				33.559	32.129	3	0.0040247	26241	160511_QHF_FH_JSI9i_3	54.524	39.838			0.48229	0.39701	NaN	1	1	Median	0.48229	0.39701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107100000	64392000	42713000	107100000	64392000	42713000	0	0	0	0	0	0	0	0	0	28009	4628	26515	174814;174815	236437;236438	236438			2	
KPADDQDPIDALSGDLDSCPSTTETSQNTAK	2	Unmodified	3276.4576	0.4575888	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	67.734	67.321	3	1.1252E-21	60930	160511_QHF_FH_JSI10i_1	106.6	104.4			1.1251	1.1676	6.6354	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0325	1.1658	7.6631	2	2	Median	1.162	1.1076	NaN	1	0	Median	1.1695	1.2494	NaN	1	0	Median	146120000	75031000	71084000	0	0	0	64607000	32524000	32083000	38362000	20964000	17397000	43146000	21543000	21604000	28010	1181	26516	174816;174817;174818;174819	236439;236440;236441;236442;236443;236444;236445	236445			7	
KPAEQAEETAPIEATATK	2	Unmodified	1883.9476	0.94763666	3531	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	26.661	26.087	3	6.7576E-05	22960	160511_QHF_FH_JSI10i_1	65.924	57.159			1.0421	1.0203	16.619	4	0	Median	1.0938	0.90155	NaN	1	0	Median	0.99273	1.1547	NaN	1	0	Median	0.8708	0.86045	NaN	1	0	Median	1.1553	1.1885	NaN	1	0	Median	357560000	165400000	192150000	75599000	29610000	45989000	84093000	44816000	39277000	101740000	50953000	50789000	96124000	40024000	56099000	28011	3531	26517	174820;174821;174822;174823	236446;236447	236447			2	
KPAEQAEETAPIEATATKEEEGSS	2	Unmodified	2502.1609	0.1609365	3531	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	0	2			By MS/MS		1	0	1											1		34.928	34.682	3	9.7291E-08	31142	160511_QHF_FH_JSI11i_1	80.702	66.377			0.78334	0.76195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78334	0.76195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34243000	11020000	23223000	0	0	0	0	0	0	34243000	11020000	23223000	0	0	0	28012	3531	26518	174824	236448	236448			1	
KPAFNLSAFGTLSPSLGNSSILK	2	Unmodified	2348.274	0.2739966	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		99.552	99.403	3	3.9647E-08	82220	160511_QHF_FH_JSI10i_3	76.417	72.255			0.73561	0.78545	13.728	3	0	Plateau	0.73561	0.61177	NaN	1	0	Median	0.68447	0.76492	NaN	1	0	Median	0.86514	0.78545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82956000	47438000	35517000	13089000	7016600	6072200	21191000	13299000	7891900	48676000	27123000	21553000	0	0	0	28013	1684	26519	174825;174826;174827;174828	236449;236450;236451;236452;236453;236454	236451			6	
KPALELLHYLK	2	Unmodified	1323.7915	0.79145778	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							5	3	2	4	62.945	62.123	3;4	6.6147E-06	51355	160511_QHF_FH_JSI9i_3	104.87	104.87			0.93411	0.97131	17.017	8	8	Median	1.5145	1.219	9.425	2	2	Median	0.92444	1.0768	7.0673	2	2	Median	0.94316	0.88683	5.3531	2	2	Median	0.82018	0.83533	5.8183	2	2	Median	1151200000	585700000	565490000	197300000	73704000	123600000	160440000	86021000	74422000	324090000	162090000	162000000	469350000	263890000	205470000	28014	1733	26520	174829;174830;174831;174832;174833;174834;174835;174836;174837;174838;174839;174840;174841;174842	236455;236456;236457;236458;236459;236460;236461;236462;236463;236464;236465;236466;236467;236468;236469;236470;236471	236462			17	
KPALFPEPAK	2	Unmodified	1096.6281	0.62808085	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	33.2	32.116	3	0.003917	26142	160511_QHF_FH_JSI9i_3	42.718	34.792			0.85055	0.82701	14.289	4	1	Median	1.0178	0.84252	13.786	2	1	Median	0.78648	0.89492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67583	0.68272	NaN	1	0	Median	136640000	69463000	67178000	49128000	25234000	23894000	36064000	17664000	18400000	0	0	0	51450000	26565000	24885000	28015	4143	26521	174843;174844;174845;174846	236472;236473;236474;236475	236473			4	
KPALGFYDTSEENYQALDADFRK	2	Unmodified	2677.266	0.26601069	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		72.391	71.416	4	2.2121E-06	59840	160511_QHF_FH_JSI10i_3	67.864	61.288			0.94322	0.96935	28.031	3	0	Median	0.7678	0.63384	NaN	1	0	Median	0.94322	1.076	NaN	1	0	Median	1.0095	0.96935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129960000	62010000	67945000	41196000	16393000	24804000	33856000	17640000	16216000	54902000	27977000	26926000	0	0	0	28016	4271	26522	174847;174848;174849	236476;236477;236478;236479	236478			4	
KPALQSSVVATSK	2	Unmodified	1314.7507	0.75071518	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.04			9					2	3	6	2	4	2	22.311	19.629	2;3	4.9601E-07	16128	160511_QHF_FH_JSI10i_3	127.02	118.91			0.89814	0.86548	22.545	12	2	Median	1.0714	0.8705	33.337	5	2	Median	0.76885	0.918	4.0986	2	0	Median	0.93118	0.86049	2.575	3	0	Plateau	0.72623	0.72436	8.1861	2	0	Median	1807500000	937840000	869680000	764620000	363700000	400920000	345760000	186160000	159600000	379660000	215880000	163780000	317460000	172090000	145370000	28017	4686	26523	174850;174851;174852;174853;174854;174855;174856;174857;174858;174859;174860;174861;174862;174863	236480;236481;236482;236483;236484;236485;236486;236487;236488;236489;236490;236491;236492;236493;236494;236495;236496;236497;236498;236499;236500;236501	236484			21	
KPALVAK	2	Unmodified	725.47996	0.47996005	1327;1245	P29692;P24534	EEF1D;EEF1B2	Elongation factor 1-delta;Elongation factor 1-beta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	7.483	7.2367	2	0.015615	5443	160511_QHF_FH_JSI10i_3	64.776	10.251			0.72848	0.74307	13.641	4	0	Median	1.0536	0.93387	NaN	1	0	Median	0.68119	0.74938	NaN	1	0	Median	0.77905	0.7368	NaN	1	0	Median	0.66438	0.67873	NaN	1	0	Median	14343000000	5898400000	8444500000	5107300000	1568000000	3539400000	3373200000	1626600000	1746600000	2424800000	1188300000	1236500000	3437600000	1515600000	1922000000	28018	1327;1245	26524	174864;174865;174866;174867	236502;236503;236504;236505;236506;236507;236508;236509	236504			8	
KPANDITSQLEINFGDLGR	1	Unmodified	2087.0647	0.064732107	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							1	3	2		83.079	82.58	2;3	1.0876E-07	73546	160511_QHF_FH_JSI11i_3	99.092	95.948			0.94569	0.89474	7.0111	5	2	Median	0.95206	0.80716	NaN	1	1	Median	0.72706	0.85932	9.7053	2	1	Median	0.97937	0.909	2.2355	2	0	Median	NaN	NaN	NaN	0	0	Median	449730000	226180000	223550000	71042000	32684000	38357000	155570000	89727000	65844000	223120000	103770000	119350000	0	0	0	28019	3609	26525	174868;174869;174870;174871;174872;174873	236510;236511;236512;236513;236514;236515;236516;236517;236518;236519;236520	236510			11	
KPAPPPAPPQATK	2	Unmodified	1298.7347	0.73467118	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	14.928	14.639	3	0.0030506	11214	160511_QHF_FH_JSI12i_3	45.825	42.783			1.0144	1.0644	9.81	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0144	1.1694	NaN	1	0	Median	1.2406	1.155	NaN	1	0	Median	0.97955	0.98093	NaN	1	0	Median	289780000	145430000	144360000	0	0	0	32412000	14042000	18370000	97398000	46303000	51095000	159970000	85081000	74891000	28020	3341	26526	174874;174875;174876	236521;236522;236523;236524	236523			4	
KPAPVPAEPFDNTTYK	2	Unmodified	1773.8938	0.8937506	1870	P56181	NDUFV3	NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	43.718	43.319	3	1.311E-05	37056	160511_QHF_FH_JSI12i_3	93.909	83.139			0.88352	0.86453	10.503	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.59183	0.71926	NaN	1	1	Median	0.83966	0.80074	NaN	1	0	Median	0.88352	0.88737	NaN	1	0	Median	238090000	120260000	117830000	0	0	0	25183000	16362000	8820500	81880000	40443000	41438000	131030000	63458000	67574000	28021	1870	26527	174877;174878;174879	236525;236526;236527;236528;236529	236529			5	
KPASSSSAPQNIPK	2	Unmodified	1410.7467	0.74669243	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		11.906	11.409	2;3	7.6382E-05	8994	160511_QHF_FH_JSI10i_3	69.345	58.3			0.96487	0.83238	20.048	6	0	Median	0.96487	0.79029	6.8492	2	0	Median	0.65422	0.75543	14.206	2	0	Median	1.1653	1.0978	9.7914	2	0	Median	NaN	NaN	NaN	0	0	Median	264260000	121960000	142300000	58666000	26223000	32443000	86886000	48908000	37977000	118710000	46829000	71884000	0	0	0	28022	4069	26528	174880;174881;174882;174883;174884;174885	236530;236531;236532;236533;236534	236531			5	
KPATEVDPTHFEK	2	Unmodified	1497.7464	0.74635808	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	25.828	25.812	3	5.144E-05	21424	160511_QHF_FH_JSI12i_3	79.81	69.759			0.86584	0.90109	48.158	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3474	1.2666	NaN	1	1	Median	0.55636	0.64103	NaN	1	0	Median	132150000	63520000	68626000	0	0	0	0	0	0	59047000	24583000	34463000	73099000	38937000	34162000	28023	1230	26529	174886;174887	236535;236536;236537;236538	236536			4	
KPATSYVR	1	Unmodified	920.50797	0.50796571	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		7.743	7.3752	2	0.032598	5128	160511_QHF_FH_JSI9i_3	41.227	5.7334			0.78657	0.75636	4.3808	3	0	Median	0.96217	0.77142	NaN	1	0	Median	0.62299	0.70942	NaN	1	0	Median	0.78657	0.75636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1294300000	726250000	568080000	626950000	324730000	302220000	490400000	284200000	206200000	176990000	117320000	59664000	0	0	0	28024	1592	26530	174888;174889;174890	236539	236539			1	
KPDIDITGPK	2	Unmodified	1082.5972	0.59717465	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS		By matching	By MS/MS	2.4	0.49		3	2							2		1	2	28.66	28.153	2;3	0.013356	23424	160511_QHF_FH_JSI12i_3	44.318	35.455			0.97413	0.92074	23.609	5	0	Median	1.151	0.99378	23.589	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69653	0.69308	NaN	1	0	Median	1.0406	1.0602	19.94	2	0	Median	221000000	93370000	127630000	60981000	26591000	34390000	0	0	0	32552000	10965000	21588000	127470000	55814000	71656000	28025	2286	26531	174891;174892;174893;174894;174895	236540;236541;236542;236543	236540			4	
KPDPASLR	1	Unmodified	882.49232	0.49231565	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.724	10.013	3	0.0062648	7483	160511_QHF_FH_JSI9i_3	38.303	27.43			1.2974	1.0344	NaN	1	0	Median	1.2974	1.0344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49313000	25773000	23540000	49313000	25773000	23540000	0	0	0	0	0	0	0	0	0	28026	3042	26532	174896	236544	236544			1	
KPDQAIK	2	Unmodified	798.45995	0.45995289	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	2	0.816	1	1	1								1	1	1	4.6985	4.5849	2	0.042633	2090	160511_QHF_FH_JSI12i_3	46.426	16.241			1.0629	1.0711	15.722	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0732	1.2168	NaN	1	0	Median	0.88007	0.89005	NaN	1	0	Median	1.0629	1.0711	NaN	1	0	Median	289460000	138770000	150690000	0	0	0	23472000	12651000	10821000	75139000	39937000	35202000	190850000	86186000	104660000	28027	1040	26533	174897;174898;174899	236545	236545			1	
KPDQVFQSYKPGEVMVK	3	Unmodified	1979.0186	0.018633537	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			49.166	47.599	4	0.0015142	39764	160511_QHF_FH_JSI10i_3	49.463	44.133			0.97916	1.1296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97916	1.1296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41579000	23390000	18188000	0	0	0	41579000	23390000	18188000	0	0	0	0	0	0	28028	4152	26534	174900	236546	236546			1	
KPDSMVTNSSTENEA	1	Unmodified	1608.6937	0.69373016	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	16.31	16.034	2	1.0944E-05	13817	160511_QHF_FH_JSI10i_1	87.001	77.047			0.81837	0.84431	3.405	3	1	Median	NaN	NaN	NaN	0	0	Median	0.7628	0.88626	NaN	1	0	Median	0.86428	0.82995	NaN	1	1	Median	0.81837	0.84431	NaN	1	0	Median	147710000	80461000	67247000	0	0	0	49013000	27538000	21475000	46365000	26102000	20263000	52330000	26820000	25509000	28029	312	26535	174901;174902;174903;174904;174905	236547;236548;236549;236550;236551	236550			5	
KPEDVLDDDDAGSAPLK	2	Unmodified	1783.8476	0.84758827	1441	P35613	BSG	Basigin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.426	41.959	2	3.095E-07	37698	160511_QHF_FH_JSI10i_1	98.531	89.098			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28030	1441	26536	174906;174907;174908	236552;236553;236554	236554			3	
KPEDWDEEMDGEWEPPVIQNPEYK	2	Unmodified	2959.2858	0.28581943	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	21	15								4	9	9	14	95.578	95.161	3	3.2236E-09	74484	160511_QHF_FH_JSI10i_2	81.373	80.367			1.0126	1.0285	38.206	26	11	Median	1.0739	0.99003	NaN	1	0	Median	0.80242	0.95604	39.499	6	3	Median	1.0958	1.0684	19.458	8	4	Median	1.1304	1.2083	41.337	11	4	Median	345680000	172240000	173430000	9714500	7446600	2267900	87281000	59759000	27522000	108360000	47380000	60976000	140330000	57658000	82668000	28031	1297	26537	174909;174910;174911;174912;174913;174914;174915;174916;174917;174918;174919;174920;174921;174922;174923;174924;174925;174926;174927;174928;174929;174930;174931;174932;174933;174934;174935;174936;174937;174938;174939;174940;174941;174942;174943;174944	236555;236556;236557;236558;236559;236560;236561;236562;236563;236564;236565;236566;236567;236568;236569;236570;236571;236572;236573;236574;236575;236576;236577;236578;236579;236580;236581;236582;236583;236584;236585;236586;236587;236588;236589;236590;236591;236592;236593;236594	236590			40	
KPEENPASK	2	Unmodified	998.50327	0.50327426	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	3.64	7	9	3				2			4	5	6	6	4.7479	3.7017	2;3	0.0005515	2126	160511_QHF_FH_JSI12i_2	54.584	30.329			0.91692	0.91458	18.317	19	1	Median	1.1066	0.91458	7.5766	3	0	Median	0.71098	0.84948	28.642	4	0	Median	0.94628	0.94639	17.675	6	1	Median	0.89024	0.94571	10.318	6	0	Median	9421300000	5196800000	4224500000	1042700000	558660000	484020000	2671500000	1651500000	1020000000	3093600000	1593200000	1500400000	2613600000	1393500000	1220100000	28032	1237	26538	174945;174946;174947;174948;174949;174950;174951;174952;174953;174954;174955;174956;174957;174958;174959;174960;174961;174962;174963;174964;174965	236595;236596;236597;236598;236599;236600;236601;236602;236603;236604;236605;236606;236607;236608;236609;236610;236611;236612;236613;236614;236615;236616;236617;236618;236619;236620;236621	236600			26	
KPEENPASKFSSASK	3	Acetyl (K)	1647.8104	0.8104149	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	1	2	41.046	31.16	3	0.00042397	18074	160513_QHF_FH_JSI10Kac_4	88.768	75.583			0.80752	0.90516	21.935	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83102	0.98965	4.9523	2	0	Median	0.60744	0.58504	NaN	1	0	Median	0.79725	0.86879	5.8002	2	0	Median	218370000	122730000	95640000	0	0	0	82210000	40988000	41222000	43808000	25289000	18519000	92350000	56450000	35900000	28033	1237	26539	174966;174967;174968;174969;174970	236622;236623;236624;236625;236626	236623	1135		5	
KPEKPLFSSASPQDSSPR	2	Acetyl (K)	1999.0011	0.0010692176	159	O00712	NFIB	Nuclear factor 1 B-type	yes	yes	1	0	0	2	By MS/MS				15	0								1		1				50.858	40.407	3	0.038725	21752	160513_QHF_FH_JSI9Kac_5	43.598	41.632			0.72293	0.61041	NaN	1	0	Median	0.72293	0.61041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3633900	1854500	1779400	3633900	1854500	1779400	0	0	0	0	0	0	0	0	0	28034	159	26540	174971	236627	236627			1	
KPELVISYLPPGMASK	2	Unmodified	1728.9484	0.94842871	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			4								1	1	2	74.461	73.958	2;3	9.2505E-06	64226	160511_QHF_FH_JSI12i_3	97.579	91.735			1.0263	1.0087	13.85	4	0	Median	NaN	NaN	NaN	0	0	Median	0.69981	0.78718	NaN	1	0	Median	1.0032	0.96899	NaN	1	0	Median	1.0565	1.0556	0.74268	2	0	Median	576910000	267410000	309500000	0	0	0	40450000	25806000	14643000	174310000	78968000	95344000	362150000	162640000	199510000	28035	2087	26541	174972;174973;174974;174975	236628;236629;236630;236631;236632;236633;236634;236635;236636	236633			9	
KPEMFETAIK	2	Unmodified	1192.6162	0.61619553	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	36.063	35.917	2;3	1.1758E-05	30450	160511_QHF_FH_JSI12i_3	93.258	83.57			0.80254	0.82131	10.993	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80254	0.82131	10.993	2	1	Median	625910000	352670000	273240000	0	0	0	0	0	0	0	0	0	625910000	352670000	273240000	28036	2087	26542	174976;174977	236637;236638;236639;236640;236641	236638			5	
KPEMPNMLEILK	2	Unmodified	1441.7673	0.76729322	2663	Q15390	MTFR1	Mitochondrial fission regulator 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	79.284	78.541	3	3.5639E-05	69983	160511_QHF_FH_JSI11i_3	78.324	65.557			0.77732	1.0503	30.755	4	1	Linear	0.64237	0.55236	NaN	1	0	Median	0.62821	0.71455	NaN	1	1	Median	1.1943	1.12	NaN	1	0	Median	0.94062	0.92345	NaN	1	0	Median	109310000	57173000	52134000	6632100	3510000	3122100	13689000	7506900	6182500	45450000	23409000	22041000	43536000	22747000	20789000	28037	2663	26543	174978;174979;174980;174981	236642;236643;236644	236642			3	
KPEPPVNLK	2	Unmodified	1020.5968	0.59678072	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.093	22.083	3	0.060344	18168	160511_QHF_FH_JSI12i_3	20.03	14.307			0.8952	0.8968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8952	0.8968	NaN	1	1	Median	124370000	61705000	62661000	0	0	0	0	0	0	0	0	0	124370000	61705000	62661000	28038	404	26544	174982	236645	236645			1	
KPESNAVTK	2	Unmodified	972.52401	0.52400971	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		4	2					1		1	2	3	1	4.6982	3.1493	2;3	0.0015542	2208	160511_QHF_FH_JSI11i_3	68.657	40.644			0.90303	0.9807	29.249	7	1	Median	1.2921	1.1233	NaN	1	0	Median	0.70496	0.87873	18.436	2	1	Median	1.0653	0.9807	34.233	3	0	Median	0.65128	0.68385	NaN	1	0	Median	2399800000	1343300000	1056500000	273270000	119180000	154090000	630520000	370070000	260450000	954430000	469080000	485350000	541580000	384930000	156640000	28039	1298	26545	174983;174984;174985;174986;174987;174988;174989	236646;236647;236648;236649;236650;236651;236652;236653	236646			7	
KPEVASWVHFDNLK	2	Unmodified	1668.8624	0.86239089	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			62.006	60.489	3;4	0.0054852	50722	160511_QHF_FH_JSI10i_3	40.211	26.127			0.76321	0.83644	36.533	3	1	Plateau	1.1286	0.91773	NaN	1	0	Median	0.99976	1.1717	47.66	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	179540000	74335000	105200000	38247000	18755000	19492000	141290000	55580000	85710000	0	0	0	0	0	0	28040	2213	26546	174990;174991;174992	236654;236655;236656;236657;236658;236659	236656			6	
KPEVGGVIR	1	Unmodified	953.56581	0.56581494	5575	Q9Y3B7	MRPL11	39S ribosomal protein L11, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				16.989	15.875	3	0.030152	12618	160511_QHF_FH_JSI9i_3	32.218	20.625			0.78058	0.65265	NaN	1	1	Median	0.78058	0.65265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19365000	8938100	10427000	19365000	8938100	10427000	0	0	0	0	0	0	0	0	0	28041	5575	26547	174993	236660	236660			1	
KPEYDLEEDDQEVLK	2	Unmodified	1848.8629	0.86290398	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		47.595	47.184	3	0.00038341	42742	160511_QHF_FH_JSI11i_1	59.261	46.198			1.2839	1.223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2839	1.223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30337000	13413000	16924000	0	0	0	0	0	0	30337000	13413000	16924000	0	0	0	28042	2402	26548	174994	236661	236661			1	
KPFEEHWR	1	Acetyl (K)	1169.5618	0.56179219	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.626	32.055	3	0.033806	17602	160513_QHF_FH_JSI11Kac_6	37.344	23.991			0.16987	0.17161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16987	0.17161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4754600	4120700	633910	0	0	0	0	0	0	4754600	4120700	633910	0	0	0	28043	1367	26549	174995	236662	236662			1	
KPFFSWW	1	Unmodified	996.48577	0.48577371	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	92.752	92.741	2	0.035202	80497	160511_QHF_FH_JSI12i_3	50.039	43.59			0.89747	0.85697	6.1583	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88684	0.82046	NaN	1	0	Median	0.90823	0.89512	NaN	1	0	Median	47481000	24973000	22508000	0	0	0	0	0	0	20231000	9471800	10759000	27250000	15501000	11749000	28044	4422	26550	174996;174997	236663;236664	236664			2	
KPFMLDEEGDTQTEETQPSETK	2	Unmodified	2539.1272	0.12719353	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	3	4	2	43.063	42.449	3	7.14E-29	36972	160511_QHF_FH_JSI9i_2	169.85	162.81			0.87284	0.92749	17.867	10	3	Median	1.1271	0.97838	NaN	1	0	Median	0.80629	0.93423	5.5571	3	0	Plateau	0.88015	0.84384	19.387	4	2	Median	0.90376	0.9081	28.787	2	1	Median	675750000	346960000	328790000	97815000	36716000	61099000	185540000	99040000	86501000	302920000	164500000	138430000	89469000	46709000	42759000	28045	1169	26551	174998;174999;175000;175001;175002;175003;175004;175005;175006;175007	236665;236666;236667;236668;236669;236670;236671;236672;236673;236674;236675;236676;236677;236678;236679;236680;236681;236682;236683;236684;236685;236686	236679			22	
KPFPDFVYK	2	Unmodified	1139.6015	0.60153174	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							4	3	2	2	50.04	49.167	2;3	0.00075855	43341	160511_QHF_FH_JSI11i_3	61.56	55.525			1.0352	0.99642	16.751	9	1	Median	1.1556	0.92274	21.905	3	0	Median	1.0707	1.2231	22.062	2	1	Median	1.0359	0.97399	3.2194	2	0	Median	0.93103	0.96213	6.5165	2	0	Median	2250500000	1092300000	1158200000	319290000	158720000	160580000	372880000	207390000	165480000	594350000	264890000	329460000	964000000	461310000	502680000	28046	2739	26552	175008;175009;175010;175011;175012;175013;175014;175015;175016;175017;175018	236687;236688;236689;236690;236691;236692;236693;236694;236695;236696;236697;236698;236699;236700;236701;236702;236703;236704;236705;236706;236707;236708;236709	236692			23	
KPFPLVK	2	Unmodified	827.52691	0.52691024	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		2	1	25.733	25.271	3	0.0040413	20740	160511_QHF_FH_JSI12i_3	58.981	17.754			0.80575	0.84732	36.274	3	1	Plateau	1.7093	1.3922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1214	1.0582	NaN	1	0	Median	0.67171	0.67846	NaN	1	0	Median	354630000	176930000	177700000	66175000	25406000	40769000	0	0	0	123900000	62002000	61900000	164560000	89521000	75034000	28047	5330	26553	175019;175020;175021;175022	236710;236711;236712;236713	236713			4	
KPFSQHVR	1	Acetyl (K)	1039.5563	0.55631289	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	19.196	11.445	3	0.011592	7412	160513_QHF_FH_JSI10Kac_6	87.639	62.08			0.31068	0.34151	100	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3	1.5603	NaN	1	0	Median	0.24633	0.23662	NaN	1	0	Median	0.31068	0.34151	NaN	1	0	Median	223810000	142800000	81010000	0	0	0	93863000	38986000	54877000	115360000	92647000	22714000	14587000	11168000	3419200	28048	2196	26554	175023;175024;175025	236714;236715;236716	236715	2319		3	
KPFTPVK	2	Unmodified	815.49052	0.49052473	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	11.453	10.988	3	0.0026826	8573	160511_QHF_FH_JSI10i_3	67.981	50.741			0.95303	1.093	31.573	3	1	Median	1.4446	1.1413	NaN	1	0	Median	0.95303	1.093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6481	0.64726	NaN	1	1	Median	1842500000	863160000	979340000	469590000	186160000	283430000	518530000	242180000	276350000	0	0	0	854380000	434830000	419560000	28049	5502	26555	175026;175027;175028;175029;175030	236717;236718;236719;236720;236721;236722;236723	236720			7	
KPFVALGSGEESPLEGW	1	Unmodified	1801.8887	0.88866522	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	88.382	88.327	2	5.2442E-06	76574	160511_QHF_FH_JSI12i_3	100.93	95.089			0.90851	0.89113	7.552	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98133	0.94001	NaN	1	0	Median	0.84109	0.84479	NaN	1	0	Median	98964000	47255000	51709000	0	0	0	0	0	0	42334000	18653000	23682000	56630000	28602000	28027000	28050	5100	26556	175031;175032	236724;236725;236726;236727	236726			4	
KPFYLYTGR	1	Unmodified	1143.6077	0.60767976	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	45.266	37.543	3	1.2043E-05	20624	160513_QHF_FH_JSI10Kac_6	118.71	92.594			0.80123	0.90998	2.5452	5	0	Linear	1.0525	0.89569	NaN	1	0	Median	0.76828	0.905	2.9521	2	0	Median	0.88242	0.86114	NaN	1	0	Median	0.80123	0.88482	NaN	1	0	Median	96540000	55000000	41540000	25837000	13446000	12392000	52041000	30666000	21375000	8196200	3780700	4415400	10465000	7107600	3357900	28051	1226	26557	175033;175034;175035;175036;175037	236728;236729;236730;236731;236732;236733;236734;236735	236735			8	
KPGADLSDYFNYGFNEDTWK	2	Unmodified	2366.0491	0.049141622	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	88.595	88.54	3	5.934E-08	79029	160511_QHF_FH_JSI11i_3	90.22	75.131			0.88987	0.86027	12.562	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84033	0.78715	NaN	1	1	Median	0.94234	0.94019	NaN	1	0	Median	92770000	48656000	44113000	0	0	0	0	0	0	31271000	14995000	16275000	61499000	33661000	27838000	28052	3143	26558	175038;175039;175040	236736;236737;236738;236739	236737			4	
KPGAGDTAFPGTGGFSATFDYQQAFGNSTGGFDGQAR	1	Unmodified	3684.6506	0.6505668	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				89.888	89.484	3	0.0064218	78742	160511_QHF_FH_JSI9i_2	29.157	27.453			1.2383	1.0747	NaN	1	1	Median	1.2383	1.0747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14825000	5555300	9269500	14825000	5555300	9269500	0	0	0	0	0	0	0	0	0	28053	4197	26559	175041	236740	236740			1	
KPGDLSDELR	1	Unmodified	1128.5775	0.57750184	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.09	1	5	2					1		1	1	5	2	26.175	24.638	2;3	0.0021582	20549	160511_QHF_FH_JSI12i_3	61.765	28.924			0.9738	0.92496	25.564	9	3	Median	1.0471	0.88893	NaN	1	0	Median	0.9738	1.2143	NaN	1	0	Median	0.95767	0.92496	27.779	5	3	Median	0.91883	0.97083	28.099	2	0	Median	1299000000	676220000	622830000	165860000	77850000	88008000	172950000	93770000	79183000	647210000	343820000	303390000	313030000	160780000	152250000	28054	2412	26560	175042;175043;175044;175045;175046;175047;175048;175049;175050	236741;236742;236743;236744;236745;236746;236747;236748;236749;236750	236750			10	
KPGGFDISLFYR	1	Unmodified	1398.7296	0.7295858	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	3	2	76.853	73.267	2;3	2.1471E-06	63295	160511_QHF_FH_JSI10i_3	110.08	98.544			1.0289	0.91337	14.773	11	0	Median	1.0322	0.81467	22.092	3	0	Plateau	0.78211	0.90993	14.572	3	0	Median	1.0988	1.0002	2.1027	3	0	Plateau	0.79903	0.82098	14.809	2	0	Median	2029900000	980320000	1049600000	656410000	301630000	354780000	644860000	346240000	298620000	585910000	258930000	326990000	142700000	73531000	69169000	28055	1023	26561	175051;175052;175053;175054;175055;175056;175057;175058;175059;175060;175061	236751;236752;236753;236754;236755;236756;236757;236758;236759;236760;236761;236762;236763;236764;236765;236766;236767;236768;236769;236770;236771;236772;236773;236774;236775;236776	236759			26	
KPGLEEAVESACAMR	1	Unmodified	1646.7756	0.77562607	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			50.494	49.545	3	0.043017	43526	160511_QHF_FH_JSI10i_2	28.956	17.685			3.0069	3.6559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.0069	3.6559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251750000	88172000	163580000	0	0	0	251750000	88172000	163580000	0	0	0	0	0	0	28056	4983	26562	175062	236777	236777			1	
KPGLTPSPSATTPLTK	2	Unmodified	1594.893	0.89302232	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			38.298	36.825	3	0.0010605	30177	160511_QHF_FH_JSI9i_3	61.165	54.126			0.85566	0.82353	3.9989	2	2	Median	1.0063	0.80057	NaN	1	1	Median	0.72757	0.84715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87439000	48696000	38743000	50020000	26529000	23492000	37419000	22167000	15251000	0	0	0	0	0	0	28057	5208	26563	175063;175064	236778;236779;236780	236780			3	
KPGMFFNPEESELDLTYGNR	1	Oxidation (M)	2359.0791	0.079061542	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		71.883	70.781	3	2.7959E-14	59253	160511_QHF_FH_JSI10i_3	146.81	139.18			0.92111	0.77413	12.357	4	1	Linear	1.1366	0.93578	15.426	2	1	Median	0.78109	0.912	NaN	1	0	Median	0.84229	0.78305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	307120000	165910000	141210000	154230000	71288000	82946000	63659000	37928000	25732000	89225000	56693000	32532000	0	0	0	28058	1000	26564	175065;175066;175067;175068	236781;236782;236783;236784;236785;236786;236787;236788;236789;236790;236791	236785		578	11	
KPGMFFNPEESELDLTYGNR	1	Unmodified	2343.0841	0.08414692	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	2	3		79.184	78.33	2;3	2.286E-35	64429	160511_QHF_FH_JSI9i_3	197.38	190.11			0.9332	0.85723	8.2237	8	5	Median	1.0525	0.84872	11.126	3	1	Plateau	0.70066	0.83545	5.9511	2	2	Median	0.85305	0.83169	6.5798	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1792500000	939210000	853290000	441240000	238440000	202800000	274800000	148340000	126460000	1076500000	552430000	524030000	0	0	0	28059	1000	26564	175069;175070;175071;175072;175073;175074;175075;175076	236792;236793;236794;236795;236796;236797;236798;236799;236800;236801;236802;236803;236804;236805;236806;236807;236808	236803			17	
KPGPGEPLVFGK	2	Unmodified	1224.6867	0.68665836	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	4	2	3	39.162	38.431	2;3	3.2644E-05	32315	160511_QHF_FH_JSI10i_3	84.289	74.857			0.86005	0.87606	16.879	9	4	Median	1.3561	1.1026	0.95554	2	0	Median	0.83424	0.93954	5.0726	2	0	Median	0.79527	0.74146	22.382	2	2	Median	0.84626	0.85857	4.2025	3	2	Median	911020000	488260000	422760000	103780000	47732000	56044000	123050000	83471000	39584000	256650000	131630000	125020000	427540000	225430000	202110000	28060	286	26565	175077;175078;175079;175080;175081;175082;175083;175084;175085;175086;175087;175088	236809;236810;236811;236812;236813;236814;236815;236816;236817;236818;236819	236812			11	
KPGPPVLSSDPNMLSNEEAGHHFEQMLK	2	Unmodified	3088.4746	0.47464003	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			11							4	5	2		72.258	71.062	4;5	5.8059E-18	62607	160511_QHF_FH_JSI11i_3	102.27	99.89			0.98072	0.92212	17.932	11	3	Median	1.2232	0.99619	19.134	4	1	Median	0.77474	0.9197	20.934	5	2	Median	0.93036	0.87801	10.345	2	0	Median	NaN	NaN	NaN	0	0	Median	580710000	285180000	295530000	109740000	50415000	59326000	204070000	104030000	100040000	266900000	130740000	136160000	0	0	0	28061	558	26566	175089;175090;175091;175092;175093;175094;175095;175096;175097;175098;175099	236820;236821;236822;236823;236824;236825;236826;236827;236828;236829;236830;236831;236832;236833	236822			11	
KPGTAVVEFATVK	2	Unmodified	1345.7606	0.76055158	5038	Q9NVM6	DNAJC17	DnaJ homolog subfamily C member 17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	41.929	41.34	2;3	0.00016007	34107	160511_QHF_FH_JSI9i_3	68.83	58.22			0.84097	0.83866	26.378	6	1	Linear	1.0608	0.88376	NaN	1	0	Median	0.76593	0.89117	NaN	1	0	Median	1.2196	1.1429	10.693	2	0	Median	1.0071	1.0418	52.05	2	1	Median	380280000	190030000	190250000	72670000	35472000	37198000	76018000	40333000	35685000	107660000	48749000	58910000	123930000	65474000	58456000	28062	5038	26567	175100;175101;175102;175103;175104;175105	236834;236835;236836;236837;236838;236839;236840;236841;236842	236839			9	
KPHAFAVPGQSYQSQSR	1	Acetyl (K)	1928.9493	0.94930842	2790	Q2KHR2	RFX7	DNA-binding protein RFX7	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			45.506	36.894	3	0.0030851	20389	160513_QHF_FH_JSI10Kac_6	62.203	51.148			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6068000	6068000	0	0	0	0	6068000	6068000	0	0	0	0	0	0	0	28063	2790	26568	175106	236843	236843	2690		1	
KPHIIIATPGR	1	Acetyl (K)	1243.7401	0.74009091	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.296	41.575	3	0.044557	22591	160513_QHF_FH_JSI11Kac_6	33.204	22.974			0.28435	0.28495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28435	0.28495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2950300	2361900	588420	0	0	0	0	0	0	2950300	2361900	588420	0	0	0	28064	4640	26569	175107	236844	236844			1	
KPHIYYGSLEEK	2	Unmodified	1462.7456	0.7456298	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		27.402	27.402	3	0.0051969	24517	160511_QHF_FH_JSI9i_3	44.511	35.914			0.72574	0.67056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72574	0.67056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51221000	28940000	22281000	0	0	0	0	0	0	51221000	28940000	22281000	0	0	0	28065	308	26570	175108;175109	236845;236846	236846			1	
KPHIYYGSLEEK	2	Acetyl (K)	1504.7562	0.75619449	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	51.276	42.02	2;3	2.3057E-07	23117	160513_QHF_FH_JSI10Kac_6	109.84	97.485			1.065	1.0191	63.281	8	2	Median	1.1158	0.93961	6.5474	2	0	Median	1.7048	2.0259	115.87	2	1	Median	1.065	1.0252	0.12003	2	0	Median	1.6145	1.7403	76.413	2	1	Median	263990000	132720000	131280000	67385000	38092000	29294000	88518000	46147000	42371000	78094000	40690000	37404000	29997000	7790000	22207000	28066	308	26570	175110;175111;175112;175113;175114;175115;175116;175117;175118	236847;236848;236849;236850;236851;236852;236853;236854;236855;236856;236857	236854	163		11	
KPHTESLELQVR	1	Unmodified	1435.7783	0.77832691	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.967	25.612	3	8.3971E-05	20893	160511_QHF_FH_JSI9i_3	71.268	50.887			0.43889	0.35622	NaN	1	0	Median	0.43889	0.35622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38486000	26742000	11744000	38486000	26742000	11744000	0	0	0	0	0	0	0	0	0	28067	4399	26571	175119	236858;236859	236858			2	
KPIAGQVVTAMGK	2	Unmodified	1298.738	0.738042	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	32.892	32.165	2;3	0.00013498	26314	160511_QHF_FH_JSI9i_3	69.602	60.872			0.96425	0.93703	23.671	8	0	Median	1.0815	0.87713	3.9466	2	0	Median	0.84024	0.96614	3.4467	2	0	Median	0.9926	0.94444	58.39	2	0	Median	1.0022	1.0326	14.615	2	0	Median	1352600000	680890000	671700000	342880000	167750000	175130000	296410000	162500000	133910000	334620000	152450000	182170000	378690000	198200000	180480000	28068	1640	26572	175120;175121;175122;175123;175124;175125;175126;175127	236860;236861;236862;236863;236864;236865	236863			5	
KPIAGQVVTAMGK	2	Oxidation (M)	1314.733	0.73295662	1640	P49023	PXN	Paxillin	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		32.035	32.035	3	0.0076972	27832	160511_QHF_FH_JSI11i_3	41.644	33.733			2.239	2.1296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.239	2.1296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26708000	7924100	18784000	0	0	0	0	0	0	26708000	7924100	18784000	0	0	0	28069	1640	26572	175128	236866	236866		1306	1	
KPIDYTILDDIGHGVK	2	Unmodified	1782.9516	0.95159983	5123	Q9NYB9	ABI2	Abl interactor 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.956	69.658	3	5.2767E-06	60260	160511_QHF_FH_JSI12i_3	113.47	108.1			0.77267	0.77156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77267	0.77156	NaN	1	0	Median	53487000	26251000	27236000	0	0	0	0	0	0	0	0	0	53487000	26251000	27236000	28070	5123	26573	175129	236867	236867			1	
KPIDYTVLDDVGHGVK	2	Unmodified	1754.9203	0.9202997	3484	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	2	2	55.969	55.482	3;4	1.7389E-06	47714	160511_QHF_FH_JSI12i_3	118.31	107.97			0.82667	0.88887	20.132	6	3	Median	NaN	NaN	NaN	0	0	Median	0.70938	0.85032	21.666	2	1	Median	0.90259	0.85501	39.081	2	0	Median	0.86951	0.88887	2.5305	2	2	Median	918030000	491180000	426850000	0	0	0	62175000	37765000	24410000	299960000	167920000	132040000	555900000	285500000	270410000	28071	3484	26574	175130;175131;175132;175133;175134;175135	236868;236869;236870;236871;236872;236873;236874;236875	236874			7	
KPIEDPANDTVDFPK	2	Unmodified	1684.8308	0.83081599	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							1	2	4	2	45.762	45.206	2;3	0.0001068	40776	160511_QHF_FH_JSI10i_1	65.943	60.228			0.85959	0.98109	28.376	5	0	Median	0.85959	0.72693	NaN	1	0	Median	0.84506	0.98109	NaN	1	0	Median	1.2401	1.1675	NaN	1	0	Median	0.93641	0.97723	45.328	2	0	Median	307500000	170480000	137010000	54148000	31504000	22644000	70678000	36246000	34433000	63277000	31521000	31755000	119390000	71213000	48181000	28072	442	26575	175136;175137;175138;175139;175140;175141;175142;175143;175144	236876;236877;236878;236879;236880;236881;236882;236883	236878			8	
KPIHNSK	2	Acetyl (K)	864.48175	0.48175096	3637	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		4.7397	-2.8367	3	0.018241	1361	160513_QHF_FH_JSI9Kac_6	53.968	32.118			4.3462	3.7376	92.482	4	4	Median	4.3462	3.7376	70.76	2	2	Median	0.82318	0.98099	NaN	1	1	Median	7.2508	7.036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45414000	20179000	25236000	17882000	6575600	11306000	8360600	6174500	2186100	19172000	7428500	11744000	0	0	0	28073	3637	26576	175145;175146;175147;175148	236884;236885;236886;236887	236886	2899		4	
KPIIGILMQK	2	Unmodified	1139.71	0.71003634	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	3	1	57.916	57.106	2;3	0.00012162	48161	160511_QHF_FH_JSI10i_3	86.898	84.532			0.82726	0.76525	7.7245	6	6	Median	0.95153	0.76839	NaN	1	1	Median	0.63851	0.73718	1.2694	2	2	Median	0.83162	0.7992	6.7172	2	2	Median	0.86294	0.89156	NaN	1	1	Median	2497600000	1366000000	1131700000	411230000	200640000	210600000	704410000	409910000	294500000	908140000	505940000	402200000	473850000	249490000	224350000	28074	3891	26577	175149;175150;175151;175152;175153;175154;175155;175156;175157	236888;236889;236890;236891;236892;236893;236894;236895;236896;236897;236898;236899	236892			12	
KPIIGILMQK	2	Oxidation (M)	1155.705	0.70495096	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			46.817	45.254	3	0.002802	37791	160511_QHF_FH_JSI10i_3	50.108	45.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28075	3891	26577	175158	236900	236900		2325	1	
KPILLEGSPGVGK	2	Unmodified	1293.7656	0.76563696	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.585	38.084	3	0.0024004	31124	160511_QHF_FH_JSI9i_3	49.298	36.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28076	4997	26578	175159;175160	236901;236902	236902			2	
KPILLPSWIK	2	Unmodified	1193.7536	0.75361571	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	71.43	70.452	3	0.0019112	62362	160511_QHF_FH_JSI11i_3	59.426	56.298			0.9558	0.82762	10.049	3	3	Median	1.0201	0.82762	NaN	1	1	Median	0.66866	0.74138	NaN	1	1	Median	0.9558	0.90613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71456000	36102000	35354000	23993000	10221000	13773000	20538000	11696000	8841100	26925000	14185000	12740000	0	0	0	28077	3843	26579	175161;175162;175163;175164;175165	236903;236904;236905;236906;236907	236903			5	
KPIPDEHLILK	2	Unmodified	1301.7707	0.77072234	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							1	2	2	6	38.744	38.624	2;3;4	2.9407E-05	33036	160511_QHF_FH_JSI12i_3	95.401	86.888			1.0348	1.0471	0.98107	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.123	1.0556	NaN	1	1	Median	1.0262	1.0411	0.81288	2	2	Median	814060000	387020000	427040000	0	0	0	0	0	0	145210000	60962000	84243000	668850000	326050000	342800000	28078	636	26580	175166;175167;175168;175169;175170;175171;175172;175173;175174;175175;175176	236908;236909;236910;236911;236912;236913;236914;236915;236916;236917;236918;236919;236920	236914			13	
KPIPLENPK	2	Unmodified	1034.6124	0.61243078	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	17.845	17.864	2	0.016564	14992	160511_QHF_FH_JSI11i_3	43.218	22.736			1.1716	1.1365	15.122	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3543	1.2648	NaN	1	0	Median	1.0135	1.0213	NaN	1	0	Median	134240000	68810000	65434000	0	0	0	0	0	0	50682000	24761000	25920000	83562000	44049000	39513000	28079	3748	26581	175177;175178	236921;236922	236921			2	
KPISLGHPGSLK	2	Unmodified	1232.7241	0.7241065	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.663	22.366	3	0.029257	18056	160511_QHF_FH_JSI9i_3	26.682	17.728			1.0948	0.91019	NaN	1	0	Median	1.0948	0.91019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33303000	18403000	14900000	33303000	18403000	14900000	0	0	0	0	0	0	0	0	0	28080	3643	26582	175179	236923	236923			1	
KPISTHTVDFTFNK	2	Unmodified	1633.8464	0.84640648	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	42.704	41.706	3;4	3.2675E-10	34697	160511_QHF_FH_JSI9i_3	142.85	131.59			0.98514	0.92053	38.06	8	2	Median	1.0575	0.85224	11.695	2	0	Median	0.71323	0.81355	42.092	3	1	Median	1.4681	1.3892	12.978	2	1	Median	0.98895	0.97632	NaN	1	0	Median	1138400000	620380000	518000000	286630000	154250000	132380000	268420000	178040000	90380000	366360000	169100000	197250000	216970000	118980000	97989000	28081	1136	26583	175180;175181;175182;175183;175184;175185;175186;175187	236924;236925;236926;236927;236928;236929;236930;236931;236932;236933;236934;236935;236936	236934			11	
KPITDDDVDR	1	Unmodified	1172.5673	0.56733108	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	1.57	0.728	4	2	1							1	2	3	1	10.558	10.313	2	0.00050941	7741	160511_QHF_FH_JSI11i_2	72.643	41.569			0.85017	0.86034	14.667	6	1	Median	NaN	NaN	NaN	0	0	Median	0.80965	0.97645	14.552	2	1	Median	0.85565	0.83627	7.916	3	0	Plateau	1.0023	1.0367	NaN	1	0	Median	277950000	153300000	124650000	0	0	0	96784000	58132000	38652000	139520000	77380000	62140000	41644000	17789000	23855000	28082	1804	26584	175188;175189;175190;175191;175192;175193;175194	236937;236938;236939;236940;236941;236942;236943;236944;236945	236944			9	
KPITEIQDSK	2	Unmodified	1157.6292	0.62920306	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	13.623	13.696	2;3	0.00036384	10631	160511_QHF_FH_JSI12i_3	92.538	63.377			0.32456	0.32579	55.394	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32456	0.32579	55.394	3	3	Plateau	416320000	275190000	141120000	0	0	0	0	0	0	0	0	0	416320000	275190000	141120000	28083	285	26585	175195;175196;175197	236946;236947;236948	236947			3	
KPITFVVLASVMK	2	Unmodified	1431.8523	0.85234348	3351	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	0	0	0	1		By MS/MS			9.5	6.5			1						1		2			85.775	82.423	3	0.0040025	42669	160513_QHF_FH_JSI10Kac_6	55.841	48.959			0.56409	0.66823	4.0517	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56409	0.66823	4.0517	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56991000	35738000	21254000	0	0	0	56991000	35738000	21254000	0	0	0	0	0	0	28084	3351	26586	175198;175199	236949;236950	236950			2	
KPIVVVLTK	2	Unmodified	995.6743	0.67430276	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	1	By MS/MS		By MS/MS		16	0									4	2		2		47.459	38.008	3	0.00088967	20689	160513_QHF_FH_JSI11Kac_6	67.334	31.823			0.73179	0.67174	3.6095	2	2	Median	0.79655	0.6891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67229	0.65481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23914000	12244000	11670000	9132700	4179500	4953200	0	0	0	14781000	8064200	6717000	0	0	0	28085	4974	26587	175200;175201;175202;175203	236951;236952;236953;236954	236952			4	
KPKFELGK	3	Acetyl (K)	987.57532	0.57531699	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		38.4	29.358	3	0.0020193	16281	160513_QHF_FH_JSI11Kac_6	96.331	74.094			0.8737	0.76207	71.878	3	0	Median	0.8737	0.76207	NaN	1	0	Median	0.99399	1.1439	NaN	1	0	Median	0.28653	0.28284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49054000	32683000	16370000	2008200	1081400	926790	13472000	5462900	8009300	33573000	26139000	7434300	0	0	0	28086	1948	26588	175204;175205;175206	236955;236956;236957	236956	1956		3	
KPLDISVAGSQVHSPGINPLK	2	Acetyl (K)	2198.2059	0.20591704	148	O00512	BCL9	B-cell CLL/lymphoma 9 protein	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	1		2	1	77.149	67.654	3	2.3997E-16	36924	160513_QHF_FH_JSI11Kac_6	132.36	112.27			0.91129	0.9267	15.51	4	0	Median	0.80423	0.705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98651	0.96501	5.7795	2	0	Median	0.86993	0.92704	NaN	1	0	Median	213880000	111440000	102430000	29423000	18596000	10827000	0	0	0	144410000	72184000	72226000	40043000	20663000	19381000	28087	148	26589	175207;175208;175209;175210	236958;236959;236960;236961;236962;236963;236964	236959	87		7	
KPLDISVAGSQVHSPGINPLK	2	Unmodified	2156.1954	0.19535235	148	O00512	BCL9	B-cell CLL/lymphoma 9 protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				62.491	60.983	3	0.0002856	50105	160511_QHF_FH_JSI9i_3	49.973	35.045			0.90294	0.75351	NaN	1	1	Median	0.90294	0.75351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13700000	7788100	5911400	13700000	7788100	5911400	0	0	0	0	0	0	0	0	0	28088	148	26589	175211	236965	236965			1	
KPLEALYGYDYFAR	1	Unmodified	1704.8512	0.8511575	3354	Q86WA6	BPHL	Valacyclovir hydrolase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	70.303	70.154	3	0.00029044	60803	160511_QHF_FH_JSI12i_3	51.03	46.97			1.0453	0.99038	6.9213	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1323	1.0401	NaN	1	0	Median	0.96501	0.94308	NaN	1	0	Median	64761000	34790000	29972000	0	0	0	0	0	0	21007000	9994800	11012000	43755000	24795000	18960000	28089	3354	26590	175212;175213	236966;236967	236967			1	
KPLFFGEGTVLR	1	Unmodified	1362.766	0.76597131	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		61.93	61.176	3	0.015659	50351	160511_QHF_FH_JSI9i_3	48.659	40.146			0.95348	0.83542	2.7174	2	0	Median	1.0445	0.85163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8704	0.81952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180850000	100140000	80708000	37421000	17807000	19614000	0	0	0	143430000	82334000	61094000	0	0	0	28090	1690	26591	175214;175215	236968;236969	236969			0	
KPLFHGDSEIDQLFR	1	Unmodified	1800.9159	0.91588303	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			26							11	11	4		72.267	71.085	3;4	2.1419E-15	58368	160511_QHF_FH_JSI9i_3	134.14	126.73			1.0733	0.92627	27.702	21	6	Median	1.1223	0.92758	16.718	10	4	Median	0.79534	0.92025	38.486	7	1	Median	0.97667	0.90758	22.897	4	1	Median	NaN	NaN	NaN	0	0	Median	1504800000	754330000	750460000	467290000	213940000	253350000	177350000	92246000	85104000	860150000	448150000	412000000	0	0	0	28091	850	26592	175216;175217;175218;175219;175220;175221;175222;175223;175224;175225;175226;175227;175228;175229;175230;175231;175232;175233;175234;175235;175236;175237;175238;175239;175240;175241	236970;236971;236972;236973;236974;236975;236976;236977;236978;236979;236980;236981;236982;236983;236984;236985;236986;236987;236988;236989;236990;236991;236992;236993;236994;236995;236996;236997;236998;236999;237000;237001;237002	236989			32	
KPLFHGDSEIDQLFR	1	Acetyl (K)	1842.9264	0.92644771	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.842	72.528	3	0.021904	39899	160513_QHF_FH_JSI11Kac_6	57.499	44.086			0.57036	0.53574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57036	0.53574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172100000	112340000	59758000	0	0	0	0	0	0	172100000	112340000	59758000	0	0	0	28092	850	26592	175242	237003	237003	504		1	
KPLFIIVDSSNSVAYK	2	Unmodified	1779.9771	0.9770863	3579	Q8N9R8	SCAI	Protein SCAI	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				69.568	68.08	3	0.023593	55904	160511_QHF_FH_JSI9i_3	32.302	25.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28093	3579	26593	175243	237004	237004			1	
KPLIIFTPK	2	Unmodified	1055.6743	0.67430276	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	50.374	49.524	3	0.00021773	41870	160511_QHF_FH_JSI10i_3	81.972	81.972			0.8153	0.83037	9.6357	4	4	Median	1.1829	0.95922	NaN	1	1	Median	0.69999	0.82154	NaN	1	1	Median	0.80629	0.76092	NaN	1	1	Median	0.82441	0.83929	NaN	1	1	Median	1277500000	598720000	678830000	384540000	158590000	225960000	205230000	102150000	103090000	274200000	148190000	126010000	413560000	189790000	223770000	28094	2185	26594	175244;175245;175246;175247;175248;175249;175250;175251;175252	237005;237006;237007;237008;237009;237010;237011;237012;237013;237014;237015	237008			11	
KPLILVYMR	1	Unmodified	1131.6838	0.68382159	3557	Q8N6M0	OTUD6B	OTU domain-containing protein 6B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	66.574	57.461	3	0.00051662	31302	160513_QHF_FH_JSI10Kac_6	76.827	73.255			0.9394	0.91814	9.6164	4	0	Median	1.0938	0.93727	NaN	1	0	Median	0.68715	0.81396	NaN	1	0	Median	0.92466	0.8994	NaN	1	0	Median	0.95439	1.0263	NaN	1	0	Median	288320000	158330000	130000000	54377000	25217000	29160000	165490000	103210000	62272000	45270000	18344000	26926000	23189000	11550000	11639000	28095	3557	26595	175253;175254;175255;175256	237016;237017;237018;237019;237020;237021;237022;237023	237023			8	
KPLLESGTLGTK	2	Unmodified	1242.7184	0.71835242	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							4	4	4	3	31.365	30.607	2;3	9.7073E-06	25451	160511_QHF_FH_JSI10i_3	102.87	79.646			0.90069	0.87724	30.17	15	3	Median	1.0924	0.90157	16.761	4	0	Median	0.60543	0.71856	25.251	4	0	Median	0.80408	0.75666	42.668	4	2	Median	1.0735	1.1012	7.0607	3	1	Plateau	15342000000	6956900000	8385500000	2388800000	951370000	1437400000	2605600000	1354800000	1250800000	5247600000	2489300000	2758200000	5100500000	2161400000	2939100000	28096	1208	26596	175257;175258;175259;175260;175261;175262;175263;175264;175265;175266;175267;175268;175269;175270;175271	237024;237025;237026;237027;237028;237029;237030;237031;237032;237033;237034;237035;237036;237037;237038;237039;237040;237041	237029			18	
KPLLGLPSYMLQSEELR	1	Unmodified	1973.0656	0.06558373	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		84.819	84.819	3	1.5912E-05	75739	160511_QHF_FH_JSI11i_3	81.428	70.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28097	3169	26597	175272	237042	237042			1	
KPLLPYTPGSDVAGVIEAVGDNASAFK	2	Unmodified	2715.4119	0.41194665	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	101.26	101.18	3	1.338E-41	83712	160511_QHF_FH_JSI10i_3	170.27	168.07			1.0796	0.95118	9.8545	5	1	Median	1.1521	0.96394	1.8854	2	1	Median	0.76133	0.86555	NaN	1	0	Median	1.1188	1.0619	NaN	1	0	Median	0.79399	0.82892	NaN	1	0	Median	3010800000	1541000000	1469900000	544270000	265260000	279010000	674360000	355790000	318570000	1265700000	623580000	642160000	526470000	296320000	230150000	28098	2266	26598	175273;175274;175275;175276;175277	237043;237044;237045;237046;237047;237048;237049;237050	237046			8	
KPLLPYTPGSDVAGVIEAVGDNASAFKK	3	Unmodified	2843.5069	0.50690966	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		100.81	100.72	4	1.7305E-18	83317	160511_QHF_FH_JSI10i_3	111.2	104.9			0.58056	0.58971	31.529	2	0	Median	NaN	NaN	NaN	0	0	Median	0.4221	0.47186	NaN	1	0	Median	0.79851	0.73699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134020000	72799000	61220000	0	0	0	40102000	28379000	11723000	93918000	44420000	49497000	0	0	0	28099	2266	26599	175278;175279	237051;237052	237052			2	
KPLLVHVYGAYGMDLK	2	Oxidation (M)	1818.9702	0.97022678	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			60.588	51.846	3	0.025133	28550	160513_QHF_FH_JSI10Kac_6	43.454	28.033			0.62105	0.6168	28.696	2	2	Median	0.91576	0.75555	NaN	1	1	Median	0.42117	0.50352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12877000	7931700	4945600	6367900	2111400	4256500	6509400	5820300	689090	0	0	0	0	0	0	28100	2835	26600	175280;175281	237053;237054	237054			2	
KPLLVHVYGAYGMDLK	2	Unmodified	1802.9753	0.97531216	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.084	62.798	3	0.040255	54218	160511_QHF_FH_JSI12i_3	29.687	17.663			0.86531	0.88144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86531	0.88144	NaN	1	1	Median	33402000	16203000	17199000	0	0	0	0	0	0	0	0	0	33402000	16203000	17199000	28101	2835	26600	175282	237055	237055			1	
KPLMVLFGDVAMHYILSAAQTADGGGLVEK	2	Unmodified	3130.6195	0.61951335	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	98.519	90.328	4	8.2732E-21	49074	160513_QHF_FH_JSI12Kac_6	110.17	99.653			0.77211	0.8138	32.9	3	1	Median	NaN	NaN	NaN	0	0	Median	0.40313	0.48409	NaN	1	1	Median	0.95245	0.89049	NaN	1	0	Median	0.77211	0.8138	NaN	1	0	Median	522210000	296500000	225720000	0	0	0	263590000	158670000	104920000	183210000	93636000	89579000	75404000	44189000	31216000	28102	4831	26601	175283;175284;175285	237056;237057	237056			2	
KPLPDHVSIVEPK	2	Unmodified	1457.8242	0.82421447	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.61	3.47		9	17						2	9	7	8	4	36.568	35.061	2;3;4	4.5623E-10	30308	160511_QHF_FH_JSI11i_3	145.31	113.82			0.92427	1.0047	32.1	22	4	Median	1.2181	1.0152	18.441	6	1	Median	0.90406	1.064	13.315	6	1	Median	0.84883	0.81476	48.939	8	1	Median	0.7038	0.71912	7.2149	2	1	Median	12183000000	6023100000	6160400000	1806500000	843470000	963000000	2379300000	1238000000	1141300000	5735100000	2625200000	3109900000	2262700000	1316500000	946150000	28103	1227	26602	175286;175287;175288;175289;175290;175291;175292;175293;175294;175295;175296;175297;175298;175299;175300;175301;175302;175303;175304;175305;175306;175307;175308;175309;175310;175311;175312;175313	237058;237059;237060;237061;237062;237063;237064;237065;237066;237067;237068;237069;237070;237071;237072;237073;237074;237075;237076;237077;237078;237079;237080;237081;237082;237083;237084;237085;237086;237087;237088;237089;237090;237091;237092;237093;237094;237095;237096;237097;237098;237099;237100;237101;237102;237103;237104;237105;237106;237107;237108;237109;237110;237111;237112;237113;237114;237115	237062			58	
KPLPDHVSIVEPKDEILPTTPISEQK	3	Unmodified	2909.575	0.57498923	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.06		2	16						4	7	8	6	1	69.635	67.119	3;4;5	2.1682E-36	56332	160511_QHF_FH_JSI10i_3	167.72	165.28			0.94726	1.0111	21.329	21	9	Median	1.2557	1.0293	23.433	7	2	Median	0.7859	0.92607	14.078	8	4	Median	0.94726	0.93367	13.537	5	2	Median	1.357	1.4646	NaN	1	1	Median	4665100000	2372600000	2292500000	1223800000	530470000	693350000	1885800000	1011900000	873850000	1528000000	821270000	706690000	27578000	8941500	18637000	28104	1227	26603	175314;175315;175316;175317;175318;175319;175320;175321;175322;175323;175324;175325;175326;175327;175328;175329;175330;175331;175332;175333;175334;175335	237116;237117;237118;237119;237120;237121;237122;237123;237124;237125;237126;237127;237128;237129;237130;237131;237132;237133;237134;237135;237136;237137;237138;237139;237140;237141;237142;237143;237144;237145;237146;237147;237148;237149;237150;237151;237152;237153;237154;237155;237156;237157;237158;237159;237160;237161;237162;237163;237164;237165;237166;237167;237168;237169;237170;237171;237172;237173;237174;237175	237132			60	
KPLSGNSNSSGSESFK	2	Unmodified	1624.7693	0.76927837	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		11.822	11.326	3	4.2263E-05	8833	160511_QHF_FH_JSI11i_3	79.317	71.406			0.97162	1.0984	19.88	3	0	Plateau	0.97162	0.80927	NaN	1	0	Median	0.7021	0.83039	NaN	1	0	Median	1.2093	1.1559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	232480000	121350000	111120000	72343000	38022000	34321000	77382000	42718000	34665000	82751000	40614000	42137000	0	0	0	28105	4290	26604	175336;175337;175338	237176;237177;237178;237179;237180	237177			5	
KPLSVFK	2	Unmodified	817.50617	0.5061748	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	3	0			3							1		1	1	21.254	20.831	3	0.0043852	16952	160511_QHF_FH_JSI9i_3	60.478	20.374			1.3514	1.2814	34.33	3	0	Median	1.6134	1.3085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3514	1.2814	NaN	1	0	Median	0.70629	0.71467	NaN	1	0	Median	215160000	94836000	120320000	65280000	30736000	34544000	0	0	0	54131000	24947000	29184000	95744000	39153000	56592000	28106	3668	26605	175339;175340;175341	237181	237181			1	
KPLTLSLHGWTGTGK	2	Unmodified	1594.8831	0.88312633	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			53.823	52.248	3	0.00081372	42708	160511_QHF_FH_JSI9i_3	63.681	49.936			0.75879	0.70728	30.963	4	2	Median	0.92219	0.77199	36.969	3	2	Median	0.56043	0.64799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137840000	80500000	57340000	95896000	51078000	44818000	41944000	29421000	12523000	0	0	0	0	0	0	28107	185	26606	175342;175343;175344;175345;175346	237182;237183;237184;237185;237186	237185			5	
KPLTPKPK	3	Acetyl (K)	949.59605	0.59605244	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.599							1	5	2	2	3	2	1	18.866	9.4166	3	0.0056667	7097	160513_QHF_FH_JSI12Kac_5	79.906	63.366			0.96336	1.0682	76.759	6	1	Median	1.2743	1.0873	NaN	1	0	Median	0.84309	0.99968	6.8705	2	0	Median	2.0425	2.0113	153.94	2	1	Median	1.0385	1.126	NaN	1	0	Median	118470000	53567000	64907000	22241000	10104000	12137000	30856000	16982000	13874000	40273000	15076000	25196000	25104000	11404000	13699000	28108	190	26607	175347;175348;175349;175350;175351;175352;175353;175354	237187;237188;237189;237190;237191;237192;237193;237194;237195;237196	237191	100		10	
KPLVEMDETPQVEK	2	Unmodified	1641.8284	0.82837315	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	43.217	43.139	3	0.0001285	37967	160511_QHF_FH_JSI11i_3	91.076	81.774			0.80174	0.92524	4.5551	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0045	0.93006	6.428	2	2	Median	0.80174	0.92524	NaN	1	0	Median	212770000	120210000	92567000	0	0	0	0	0	0	140700000	74898000	65805000	72071000	45309000	26762000	28109	5039	26608	175355;175356;175357	237197;237198;237199;237200	237197			4	
KPLVIIAEDVDGEALSTLVLNR	1	Unmodified	2364.3264	0.3264261	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			6	5.79		1	2						1	2	2			98.406	96.868	3	2.8457E-29	83643	160511_QHF_FH_JSI10i_3	178.03	173.58			0.75156	0.73974	18.454	4	1	Median	0.96038	0.80133	5.9531	2	1	Median	0.53627	0.62335	18.851	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	552450000	310420000	242030000	317050000	160610000	156440000	235400000	149810000	85592000	0	0	0	0	0	0	28110	980	26609	175358;175359;175360;175361	237201;237202;237203;237204	237201			4	
KPMDLSTVK	2	Unmodified	1017.5529	0.55286699	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	20.376	20.377	3	0.0033645	16634	160511_QHF_FH_JSI12i_3	39.785	23.245			0.91936	0.94121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91936	0.94121	NaN	1	0	Median	63922000	36642000	27280000	0	0	0	0	0	0	0	0	0	63922000	36642000	27280000	28111	5461	26610	175362	237205	237205			1	
KPMGPAHWEK	2	Unmodified	1179.5859	0.58589846	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				16.993	15.88	3	0.0031288	12592	160511_QHF_FH_JSI9i_3	44.612	36.307			0.93055	0.78401	NaN	1	0	Median	0.93055	0.78401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34312000	16287000	18025000	34312000	16287000	18025000	0	0	0	0	0	0	0	0	0	28112	3614	26611	175363	237206	237206			1	
KPMLYSFQTSLPR	1	Unmodified	1566.8228	0.82283426	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			68.008	60.247	3	0.024045	33001	160513_QHF_FH_JSI10Kac_6	37.525	19.422			0.13741	0.16181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13741	0.16181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36314000	32267000	4046800	0	0	0	36314000	32267000	4046800	0	0	0	0	0	0	28113	1704	26612	175364	237207	237207			1	
KPMSLASGLVPAAPPK	2	Unmodified	1562.8854	0.88543452	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	1	3	55.961	55.124	2;3	4.7875E-08	47216	160511_QHF_FH_JSI12i_3	97.836	84.636			0.92855	0.97579	11.125	4	4	Median	1.3046	1.0484	NaN	1	1	Median	0.94248	1.102	NaN	1	1	Median	0.91484	0.87434	NaN	1	1	Median	0.8832	0.90817	NaN	1	1	Median	875430000	439710000	435720000	194870000	85874000	109000000	224930000	117540000	107390000	182980000	87002000	95979000	272640000	149290000	123350000	28114	1298	26613	175365;175366;175367;175368;175369;175370;175371;175372;175373;175374	237208;237209;237210;237211;237212;237213;237214;237215;237216;237217;237218;237219	237218			12	
KPMSLASGLVPAAPPK	2	Oxidation (M)	1578.8803	0.88034914	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	1	1	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	47.516	46.662	3	0.0015162	39238	160511_QHF_FH_JSI10i_3	51.695	49.202			0.96754	0.96106	12.6	4	0	Median	1.2814	1.0326	NaN	1	0	Median	0.78624	0.89447	NaN	1	0	Median	1.1282	1.0377	NaN	1	0	Median	0.82974	0.79839	NaN	1	0	Median	168600000	76574000	92024000	57641000	23977000	33664000	34541000	17186000	17355000	31836000	12504000	19332000	44580000	22906000	21674000	28115	1298	26613	175375;175376;175377;175378	237220;237221	237220		943	2	
KPMTNYQIPQTALLK	2	Unmodified	1744.9546	0.95457672	3502	Q8N1B4	VPS52	Vacuolar protein sorting-associated protein 52 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				60.345	58.821	3	0.018954	48235	160511_QHF_FH_JSI9i_3	38.093	33.875			1.2631	1.0052	NaN	1	1	Median	1.2631	1.0052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52119000	22851000	29269000	52119000	22851000	29269000	0	0	0	0	0	0	0	0	0	28116	3502	26614	175379	237222	237222			1	
KPMVLGHEASGTVEK	2	Oxidation (M)	1597.8134	0.81339179	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	2	2	1	17.247	16.562	3	0.00013939	11479	160511_QHF_FH_JSI11i_3	72.446	65.407			0.83532	0.85547	57.011	8	2	Median	1.2121	0.98074	69.562	3	1	Plateau	0.73538	0.82965	7.6309	2	0	Median	0.78502	0.71868	21.346	2	0	Median	0.47454	0.5099	NaN	1	1	Median	313740000	146690000	167050000	142210000	47965000	94245000	71849000	39717000	32132000	80078000	43932000	36146000	19602000	15071000	4531000	28117	2160	26615	175380;175381;175382;175383;175384;175385;175386;175387	237223;237224;237225;237226;237227;237228;237229;237230;237231;237232;237233;237234;237235;237236;237237	237224		1805	14	
KPMVLGHEASGTVEK	2	Unmodified	1581.8185	0.81847717	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	1	4	3	19.106	18.673	3;4	1.8226E-07	14955	160511_QHF_FH_JSI12i_3	115.31	95.473			0.85588	0.7597	41.875	11	5	Median	0.85588	0.71595	44.754	3	1	Median	0.63233	0.71869	NaN	1	0	Median	1.199	1.1221	38.479	4	3	Median	0.67107	0.67462	27.811	3	1	Median	1518700000	772620000	746040000	514610000	239880000	274730000	165920000	101430000	64487000	512710000	240020000	272690000	325410000	191290000	134120000	28118	2160	26615	175388;175389;175390;175391;175392;175393;175394;175395;175396;175397;175398	237238;237239;237240;237241;237242;237243;237244;237245;237246;237247;237248;237249;237250;237251;237252	237250			13	
KPMVLGHEASGTVEK	2	Acetyl (K)	1623.829	0.82904185	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		43.871	33.6	3	0.0079673	19095	160513_QHF_FH_JSI11Kac_5	63.894	55.295			0.30378	0.29913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30378	0.29913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5444600	3973100	1471500	0	0	0	0	0	0	5444600	3973100	1471500	0	0	0	28119	2160	26615	175399	237253	237253	2267		1	
KPNAETTVASEIK	2	Unmodified	1386.7355	0.73545904	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.456	24.431	3	0.0073029	20333	160511_QHF_FH_JSI12i_3	40.477	27.682			0.75483	0.78071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75483	0.78071	NaN	1	0	Median	40899000	23110000	17790000	0	0	0	0	0	0	0	0	0	40899000	23110000	17790000	28120	3282	26616	175400	237254	237254			1	
KPNEGADGQWK	2	Unmodified	1228.5836	0.58364985	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							3	2	7	3	9.6537	9.4214	2;3	4.7058E-10	6776	160511_QHF_FH_JSI12i_3	132.03	102.97			0.99123	1.0399	39.299	15	3	Median	1.3153	1.1165	11.51	3	1	Plateau	0.85008	1.0519	1.6185	2	1	Median	0.99123	0.97185	26.316	7	1	Median	0.6899	0.68767	88.047	3	0	Median	3793200000	1902500000	1890700000	257530000	110260000	147270000	347240000	182070000	165170000	1679600000	846750000	832840000	1508800000	763440000	745380000	28121	3609	26617	175401;175402;175403;175404;175405;175406;175407;175408;175409;175410;175411;175412;175413;175414;175415	237255;237256;237257;237258;237259;237260;237261;237262;237263;237264;237265;237266;237267;237268;237269;237270;237271;237272;237273;237274;237275;237276;237277;237278;237279;237280	237279			25	
KPNEGADGQWKK	3	Unmodified	1356.6786	0.67861287	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			14							4	5	4	1	8.6462	8.3453	2;3;4	1.8801E-05	6716	160511_QHF_FH_JSI10i_3	89.44	63.74			0.86897	0.87671	25.959	10	0	Median	1.4069	1.1339	20.487	3	0	Median	0.87352	0.99746	12.502	2	0	Median	0.83444	0.79255	13.006	4	0	Median	0.65553	0.65617	NaN	1	0	Median	1858400000	1005900000	852510000	449600000	167000000	282600000	255530000	150410000	105120000	1061600000	635100000	426520000	91652000	53386000	38266000	28122	3609	26618	175416;175417;175418;175419;175420;175421;175422;175423;175424;175425;175426;175427;175428;175429	237281;237282;237283;237284;237285;237286;237287;237288;237289;237290;237291;237292;237293;237294;237295	237290			14	
KPNLILNVDGLIGVAFVDMLR	1	Unmodified	2296.2977	0.29770893	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.98	93.259	3	8.6606E-11	54647	160513_QHF_FH_JSI10Kac_6	94.837	91.242			0.76769	0.89721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76769	0.89721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105420000	57197000	48222000	0	0	0	105420000	57197000	48222000	0	0	0	0	0	0	28123	1798	26619	175430	237296;237297	237296			2	
KPNSVPQELAATTEK	2	Unmodified	1611.8468	0.84680041	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								3	1		32.111	31.191	3	0.0010651	26112	160511_QHF_FH_JSI10i_3	56.514	34.3			0.88514	1.0231	57.311	3	1	Median	NaN	NaN	NaN	0	0	Median	0.706	0.80859	33.277	2	1	Median	2.127	1.999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168710000	66181000	102530000	0	0	0	63208000	34162000	29046000	105500000	32019000	73483000	0	0	0	28124	5463	26620	175431;175432;175433;175434	237298;237299;237300;237301	237300			3	
KPPAPDPFAR	1	Unmodified	1094.5873	0.58727866	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		29.145	28.474	3	0.0016524	23784	160511_QHF_FH_JSI10i_3	42.21	37.515			1.0639	1.0892	14.611	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87644	0.98227	NaN	1	0	Median	1.2916	1.2077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	246390000	120080000	126310000	0	0	0	104950000	63238000	41707000	141450000	56846000	84603000	0	0	0	28125	475	26621	175435;175436	237302	237302			1	
KPPAPPSPVQSQSPSTNWSPAVPVK	2	Unmodified	2582.3493	0.34928681	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			61.039	59.515	3	3.3486E-05	48790	160511_QHF_FH_JSI9i_3	52.79	49.825			0.70933	0.70231	1.3109	2	0	Median	0.83856	0.69583	NaN	1	0	Median	0.60003	0.70885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61802000	30620000	31182000	35277000	16806000	18471000	26525000	13814000	12711000	0	0	0	0	0	0	28126	3463	26622	175437;175438	237303;237304;237305;237306;237307	237307			5	
KPPEADMNIFEDIGDYVPSTTK	2	Unmodified	2466.1625	0.16245682	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.241	97.261	3	1.5685E-06	84204	160511_QHF_FH_JSI12i_3	70.345	57.667			1.0886	1.1301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0886	1.1301	NaN	1	0	Median	116400000	53807000	62597000	0	0	0	0	0	0	0	0	0	116400000	53807000	62597000	28127	2353	26623	175439	237308;237309	237309			2	
KPPIGGSFER	1	Acetyl (K)	1128.5928	0.59275797	5834				yes	yes	1	0	0	1	By MS/MS			By MS/MS	16	0									3	2			1	101.18	91.914	2	0.01713	53162	160513_QHF_FH_JSI9Kac_6	76.679	28.175	+		0.90031	0.9543	2.4574	3	0	Plateau	1.1636	0.99579	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90031	0.9543	NaN	1	0	Median	53944000	30074000	23870000	22905000	13404000	9500700	0	0	0	0	0	0	31039000	16670000	14369000	28128	5834	26624	175440;175441;175442	237310	237310	3574		1	
KPPKPQLMANYYNK	3	Unmodified	1690.8865	0.88649715	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			8							2	4	2		33.494	32.543	3;4	9.9075E-05	27921	160511_QHF_FH_JSI11i_3	114.82	92.014			0.55798	0.53803	29.92	6	1	Median	0.69179	0.55186	13.332	2	1	Median	0.5945	0.69034	25.51	2	0	Median	0.40647	0.38129	7.2684	2	0	Median	NaN	NaN	NaN	0	0	Median	945140000	611020000	334130000	224510000	126060000	98447000	267930000	164920000	103010000	452710000	320040000	132670000	0	0	0	28129	2502	26625	175443;175444;175445;175446;175447;175448;175449;175450	237311;237312;237313;237314;237315;237316;237317;237318;237319;237320;237321;237322	237312			12	
KPPLAAALGEAEPPGPVDATDLPK	2	Unmodified	2353.2529	0.25292681	581	O75909	CCNK	Cyclin-K	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		75.071	74.356	3	1.1814E-07	62367	160511_QHF_FH_JSI10i_3	68.88	64.625			0.77176	0.80456	2.4707	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71711	0.81874	NaN	1	1	Median	0.83059	0.79063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48884000	26954000	21930000	0	0	0	12029000	7200000	4828800	36855000	19754000	17101000	0	0	0	28130	581	26626	175451;175452	237323;237324	237324			1	
KPPLADGSGPGPEPGGK	2	Unmodified	1559.7944	0.79437091	5731	Q9Y6J0	CABIN1	Calcineurin-binding protein cabin-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.558	20.558	3	0.0040735	17272	160511_QHF_FH_JSI11i_3	44.998	38.117			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28131	5731	26627	175453	237325	237325			1	
KPPLLNNADSVQAK	2	Unmodified	1493.8202	0.82019173	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.91		5	9					3	3	7	3	5	5	31.36	27.928	2;3	4.5146E-41	23234	160511_QHF_FH_JSI10i_3	176.91	149.51			0.84698	0.84412	35.246	20	1	Median	1.085	0.88716	42.22	7	1	Median	0.71383	0.83036	8.8348	3	0	Median	0.90826	0.89088	10.176	5	0	Median	0.66178	0.67651	49.378	5	0	Median	7022100000	3502100000	3520000000	2255100000	1091100000	1164000000	1778300000	926540000	851750000	1766500000	823590000	942910000	1222300000	660930000	561340000	28132	939	26628	175454;175455;175456;175457;175458;175459;175460;175461;175462;175463;175464;175465;175466;175467;175468;175469;175470;175471;175472;175473	237326;237327;237328;237329;237330;237331;237332;237333;237334;237335;237336;237337;237338;237339;237340;237341;237342;237343;237344;237345;237346;237347;237348;237349;237350;237351;237352;237353;237354;237355;237356;237357;237358;237359;237360;237361;237362;237363;237364;237365;237366;237367;237368;237369	237339			42	
KPPMNGYQK	2	Unmodified	1061.5328	0.53280025	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	8.642	8.4222	2;3	6.2471E-06	6132	160511_QHF_FH_JSI9i_3	99.136	70.409			1.0872	0.99919	18.413	7	0	Median	1.2901	1.0468	2.2402	2	0	Median	0.73599	0.82737	NaN	1	0	Median	1.1373	1.0462	6.5056	2	0	Median	0.73716	0.73183	12.902	2	0	Median	763760000	369390000	394370000	164990000	72071000	92920000	106340000	49570000	56773000	276960000	124870000	152090000	215470000	122880000	92586000	28133	1117	26629	175474;175475;175476;175477;175478;175479;175480	237370;237371;237372;237373	237372			2	
KPPNLEGIVFPGESGLAPGSYK	2	Unmodified	2256.179	0.17903358	4577	Q9C0B0	UNK	RING finger protein unkempt homolog	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		81.554	80.913	3	0.00013373	67951	160511_QHF_FH_JSI10i_3	52.909	44.309			0.91519	0.96705	61.178	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2531	1.4905	NaN	1	0	Median	0.66842	0.62745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64641000	34451000	30191000	0	0	0	18979000	7618400	11361000	45662000	26832000	18830000	0	0	0	28134	4577	26630	175481;175482	237374;237375	237375			2	
KPPPATGTATVMQTGGSATLSK	2	Unmodified	2100.0885	0.088504016	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			38.077	36.602	3	1.2057E-05	30531	160511_QHF_FH_JSI10i_3	66.845	57.315			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28135	3643	26631	175483	237376	237376			1	
KPPPNLFK	2	Unmodified	939.55419	0.55418762	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			17							5	5	5	2	24.773	24.001	2;3	3.8555E-05	19567	160511_QHF_FH_JSI9i_3	124.08	107.88			0.82888	0.77458	10.519	17	2	Median	0.96699	0.77458	12.134	5	0	Median	0.67253	0.75974	15.474	5	1	Median	0.83401	0.7823	6.3472	5	1	Median	0.7854	0.80604	1.5663	2	0	Median	2817200000	1574900000	1242300000	919200000	466040000	453160000	585530000	346630000	238900000	645400000	380180000	265220000	667050000	382020000	285030000	28136	1122	26632	175484;175485;175486;175487;175488;175489;175490;175491;175492;175493;175494;175495;175496;175497;175498;175499;175500	237377;237378;237379;237380;237381;237382;237383;237384;237385;237386;237387;237388;237389;237390;237391;237392;237393;237394;237395;237396;237397	237391			18	
KPPPPELDMAIK	2	Unmodified	1334.7268	0.72680861	3559	Q8N6N3	C1orf52	UPF0690 protein C1orf52	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	44.856	44.736	3	0.00042841	38200	160511_QHF_FH_JSI12i_3	60.157	51.644			0.90533	0.89624	0.58381	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94373	0.89254	NaN	1	0	Median	0.86849	0.89994	NaN	1	0	Median	66136000	36810000	29326000	0	0	0	0	0	0	27078000	14803000	12275000	39058000	22007000	17051000	28137	3559	26633	175501;175502	237398	237398			1	
KPPPPSAPVIK	2	Unmodified	1129.6859	0.68593008	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	21.107	21.108	3	0.0054581	17287	160511_QHF_FH_JSI12i_3	44.299	25.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28138	3982	26634	175503	237399	237399			1	
KPPPVPALPSK	2	Unmodified	1129.6859	0.68593008	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	36.023	35.951	2;3	0.00067355	30029	160511_QHF_FH_JSI10i_3	62.799	54			0.94208	0.92212	7.2622	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92724	0.87596	NaN	1	1	Median	0.95715	0.97071	NaN	1	1	Median	491170000	253820000	237340000	0	0	0	0	0	0	163340000	81331000	82014000	327820000	172490000	155330000	28139	2525	26635	175504;175505;175506;175507;175508;175509;175510	237400;237401;237402;237403;237404;237405;237406;237407	237403			8	
KPPTDEELK	2	Unmodified	1055.5499	0.5498901	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.29	3	8	1				2			2	4	3	5	11.794	10.216	2;3	5.6978E-06	8036	160511_QHF_FH_JSI11i_2	96.015	67.288			0.94331	0.9956	11.858	14	0	Median	1.0503	0.89154	3.6615	2	0	Median	0.87753	1.0734	9.0148	4	0	Linear	0.94711	1.0166	13.456	3	0	Plateau	0.97877	0.99685	14.056	5	0	Median	2431300000	1190700000	1240600000	375110000	181750000	193360000	561100000	290470000	270630000	670650000	294760000	375880000	824440000	423710000	400730000	28140	1444	26636	175511;175512;175513;175514;175515;175516;175517;175518;175519;175520;175521;175522;175523;175524	237408;237409;237410;237411;237412;237413;237414;237415;237416;237417;237418;237419;237420;237421;237422;237423	237420			16	
KPPTFGDASVIALELLNSGYEFDEGSIIFNK	2	Unmodified	3370.6973	0.69728921	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	1	By matching			By MS/MS	16	0									3	1			2	98.655	89.315	3;4	1.0376E-56	49061	160513_QHF_FH_JSI12Kac_6	164.01	154.72			0.91664	0.97154	19.01	3	0	Median	0.8485	0.73037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95261	1.0086	5.2992	2	0	Median	221950000	112060000	109890000	73762000	33826000	39936000	0	0	0	0	0	0	148190000	78235000	69955000	28141	1454	26637	175525;175526;175527	237424;237425	237425			2	
KPPTGPLPPSK	2	Unmodified	1117.6495	0.64954457	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.949	17.987	3	0.043473	14497	160511_QHF_FH_JSI12i_3	21.23	17.556			1.0506	1.0599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0506	1.0599	NaN	1	0	Median	28495000	13995000	14500000	0	0	0	0	0	0	0	0	0	28495000	13995000	14500000	28142	1628	26638	175528	237426	237426			1	
KPPVASNGVTGK	2	Unmodified	1153.6455	0.64552182	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.6457	9.7432	3	0.00032995	7091	160511_QHF_FH_JSI12i_3	50.222	43.02			1.1834	1.1817	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1834	1.1817	NaN	1	0	Median	77857000	39812000	38045000	0	0	0	0	0	0	0	0	0	77857000	39812000	38045000	28143	3537	26639	175529	237427	237427			1	
KPPVFLK	2	Unmodified	827.52691	0.52691024	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	1				By MS/MS	3	0			1										1	24.982	24.957	3	0.007942	20707	160511_QHF_FH_JSI12i_3	47.849	1.8329			2.7936	2.7885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7936	2.7885	NaN	1	0	Median	104480000	29059000	75421000	0	0	0	0	0	0	0	0	0	104480000	29059000	75421000	28144	4092	26640	175530	237428	237428			1	
KPPVKPPTEPIGFDLEIEK	3	Unmodified	2133.1722	0.17215729	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		67.094	67.094	3	0.028446	59773	160511_QHF_FH_JSI11i_3	39.387	31.433			1.1801	1.0619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1801	1.0619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52445000	26948000	25497000	0	0	0	0	0	0	52445000	26948000	25497000	0	0	0	28145	5412	26641	175531	237429	237429			1	
KPPVTFAEK	2	Unmodified	1015.5702	0.57023162	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	21.299	20.681	3	2.9428E-05	16694	160511_QHF_FH_JSI12i_3	82.417	70.37			1.1736	1.1003	4.9984	4	0	Median	1.3032	1.0743	NaN	1	0	Median	0.95599	1.1115	NaN	1	0	Median	1.1389	1.0892	NaN	1	0	Median	1.2094	1.2015	NaN	1	0	Median	632600000	310820000	321780000	106730000	48586000	58141000	120160000	63419000	56744000	181250000	88694000	92557000	224460000	110120000	114340000	28146	2494	26642	175532;175533;175534;175535	237430;237431;237432;237433;237434	237434			5	
KPQAILEEK	2	Unmodified	1054.6023	0.60226003	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	14.514	14.545	2	0.011967	11314	160511_QHF_FH_JSI12i_3	48.423	25.352			1.0031	0.96712	0.51954	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0345	0.96357	NaN	1	0	Median	0.97262	0.97068	NaN	1	0	Median	154350000	73826000	80529000	0	0	0	0	0	0	100780000	44730000	56048000	53576000	29096000	24481000	28147	3537	26643	175536;175537	237435	237435			1	
KPQDLAHTGISSGLIAGSSIQNPK	2	Unmodified	2418.2867	0.28668655	3192	Q6ZU65	UBN2	Ubinuclein-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			57.085	55.544	4	9.6581E-08	46457	160511_QHF_FH_JSI10i_3	69.922	62.59			0.43736	0.49659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43736	0.49659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11937000	9966300	1971100	0	0	0	11937000	9966300	1971100	0	0	0	0	0	0	28148	3192	26644	175538	237436	237436			1	
KPQDQLVIER	1	Unmodified	1224.6826	0.68263561	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		22.636	22.019	3	0.00091323	18408	160511_QHF_FH_JSI11i_3	66.663	56.776			0.75956	0.72119	9.8202	3	1	Plateau	1.0128	0.86676	NaN	1	0	Median	0.69393	0.83778	NaN	1	0	Median	0.75956	0.72071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	248600000	147870000	100730000	59715000	33235000	26480000	62996000	37817000	25179000	125890000	76815000	49071000	0	0	0	28149	3799	26645	175539;175540;175541	237437;237438;237439	237437			3	
KPQLDVTR	1	Unmodified	955.54508	0.5450795	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		12.923	12.509	3	0.00066221	9893	160511_QHF_FH_JSI11i_3	81.972	46.676			0.64827	0.59483	11.711	4	3	Median	0.6893	0.55964	NaN	1	1	Median	0.62512	0.71106	NaN	1	0	Median	0.62974	0.5923	9.2238	2	2	Median	NaN	NaN	NaN	0	0	Median	458120000	303080000	155040000	184020000	138490000	45523000	109350000	63334000	46014000	164750000	101250000	63500000	0	0	0	28150	2617	26646	175542;175543;175544;175545	237440;237441;237442;237443	237440			4	
KPQSSSTEPAR	1	Unmodified	1186.5942	0.59421454	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.86	6.2		2	2					3		2	3	1	1	4.6084	0.29823	2;3	1.3432E-07	1307	160513_QHF_FH_JSI11Kac_5	88.338	71.312			0.82628	0.90115	10.98	7	0	Median	1.1121	0.9285	9.0325	2	0	Median	0.71882	0.8463	14.546	3	0	Median	0.91148	0.90115	NaN	1	0	Median	0.82628	0.90743	NaN	1	0	Median	289280000	161550000	127730000	144140000	75295000	68848000	136900000	82199000	54701000	5646400	2954500	2691900	2587000	1096200	1490800	28151	3277	26647	175546;175547;175548;175549;175550;175551;175552	237444;237445;237446;237447;237448;237449;237450	237449			7	
KPQTLMELHQEK	2	Unmodified	1480.7708	0.77079869	689	O95391	SLU7	Pre-mRNA-splicing factor SLU7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		21.435	20.8	3	0.016913	16834	160511_QHF_FH_JSI9i_3	47.189	33.526			0.88938	0.77143	2.3072	2	0	Median	0.94927	0.78412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83326	0.75895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69291000	39148000	30143000	17482000	8968200	8513400	0	0	0	51809000	30180000	21629000	0	0	0	28152	689	26648	175553;175554;175555	237451;237452	237452			1	
KPSAAPEAGASALPNPPALK	2	Unmodified	1886.0262	0.026161756	1489	P39880	CUX1	Homeobox protein cut-like 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		49.56	49.56	3	6.3244E-05	43837	160511_QHF_FH_JSI11i_3	63.998	46.081			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28153	1489	26649	175556	237453	237453			1	
KPSDGSPDTKPSR	2	Acetyl (K)	1412.6896	0.68957148	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14	0							2				1		1	11.696	2.9228	3	0.018526	4467	160513_QHF_FH_JSI12Kac_4	47.532	34.971			0.90492	1.0134	5.6895	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8241	0.97348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99367	1.055	NaN	1	0	Median	9996400	5180700	4815800	0	0	0	5038300	3021900	2016400	0	0	0	4958100	2158800	2799300	28154	3875	26650	175557;175558	237454;237455	237455	2971		1	
KPSDGSPDTKPSR	2	Unmodified	1370.679	0.6790068	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				4.9446	4.4453	3	0.014268	2404	160511_QHF_FH_JSI9i_3	47.037	34.541			1.1521	0.93292	NaN	1	0	Median	1.1521	0.93292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85969000	40701000	45268000	85969000	40701000	45268000	0	0	0	0	0	0	0	0	0	28155	3875	26650	175559	237456	237456			1	
KPSEIQQVNNPELGLSR	1	Unmodified	1908.0065	0.0064889465	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	3	1		43.152	42.261	3	6.3695E-06	35383	160511_QHF_FH_JSI10i_3	94.01	78.756			0.89566	1.0056	12.267	4	1	Median	1.146	0.97106	NaN	1	0	Median	0.89566	1.0659	3.2967	2	1	Median	0.85126	0.82438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	229250000	121940000	107310000	52369000	27462000	24907000	112770000	58250000	54520000	64112000	36230000	27882000	0	0	0	28156	3805	26651	175560;175561;175562;175563;175564;175565	237457;237458;237459;237460;237461;237462;237463;237464;237465;237466;237467;237468	237461			12	
KPSGLNGEASK	2	Unmodified	1086.5669	0.56693715	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	5.7565	5.5673	2;3	0.0020179	3455	160511_QHF_FH_JSI9i_3	70.1	36.303			0.79389	0.79732	5.7074	7	0	Median	0.95889	0.76515	NaN	1	0	Median	0.63305	0.71897	2.5961	2	0	Median	0.86209	0.81474	0.031777	2	0	Median	0.78926	0.80217	0.85873	2	0	Median	1443800000	763880000	679900000	53515000	26149000	27366000	288830000	163060000	125770000	461190000	215230000	245960000	640250000	359440000	280810000	28157	1089	26652	175566;175567;175568;175569;175570;175571;175572	237469;237470;237471;237472;237473;237474	237472			6	
KPSHTSAVSIAGK	2	Unmodified	1281.7041	0.70409934	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		9.7683	9.3578	3	0.00026492	7270	160511_QHF_FH_JSI10i_3	75.589	62.189			0.6353	0.73259	28.59	3	1	Median	0.94153	0.76447	NaN	1	0	Median	0.6353	0.73259	NaN	1	1	Median	0.50629	0.45672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159030000	88077000	70949000	78528000	36221000	42307000	45929000	28092000	17838000	34569000	23764000	10804000	0	0	0	28158	4848	26653	175573;175574;175575	237475;237476;237477	237476			3	
KPSISITTESLK	2	Unmodified	1302.7395	0.73948179	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	40.775	39.817	3	5.9501E-05	32268	160511_QHF_FH_JSI9i_3	77.644	77.644			0.7567	0.8789	21.652	5	1	Median	0.86122	0.70333	34.057	2	1	Median	0.7567	0.8789	NaN	1	0	Median	0.99537	0.94162	NaN	1	0	Median	0.73357	0.75267	NaN	1	0	Median	789050000	411640000	377410000	267300000	134100000	133210000	123030000	57663000	65370000	190640000	96216000	94425000	208070000	123660000	84412000	28159	5380	26654	175576;175577;175578;175579;175580	237478;237479;237480;237481;237482;237483;237484;237485;237486;237487	237482			10	
KPSLVASK	2	Unmodified	828.5069	0.50690308	1874	P56211	ARPP19	cAMP-regulated phosphoprotein 19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	1	1	2	8.2778	8.0213	2;3	0.032962	5883	160511_QHF_FH_JSI9i_3	48.091	36.044			0.82386	0.85561	24.149	6	0	Median	1.2499	1.011	6.6997	2	0	Median	0.69951	0.79917	NaN	1	0	Median	0.97032	0.91603	NaN	1	0	Median	0.60509	0.61114	12.186	2	0	Median	758790000	400130000	358660000	359480000	179840000	179640000	153910000	90819000	63091000	124130000	63883000	60245000	121270000	65588000	55682000	28160	1874	26655	175581;175582;175583;175584;175585;175586	237488;237489	237489			1	
KPSLVSDLPWEGAAPQSPSFSGSEDSGSPK	2	Unmodified	3043.4411	0.44107452	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			78.98	77.603	3	0.01128	65030	160511_QHF_FH_JSI10i_3	28.964	22.46			0.88019	1.0575	14.541	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88019	1.0575	14.541	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14649000	10315000	4333500	0	0	0	14649000	10315000	4333500	0	0	0	0	0	0	28161	2407	26656	175587;175588	237490;237491	237490			2	
KPSPQEVSELQATYR	1	Unmodified	1731.8792	0.87916317	2695	Q15650	TRIP4	Activating signal cointegrator 1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			39.754	38.264	3	0.020926	31896	160511_QHF_FH_JSI10i_3	34.094	27.931			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28162	2695	26657	175589;175590	237492;237493	237492			2	
KPSSAAYQK	2	Unmodified	978.51345	0.51344502	1413	P34741	SDC2	Syndecan-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	4.8493	4.691	2;3	0.00047711	2481	160511_QHF_FH_JSI11i_3	97.431	71.322			0.97463	0.482	43.558	5	2	Linear	1.0509	0.84397	NaN	1	0	Median	0.82596	0.94339	NaN	1	0	Median	0.37393	0.35755	NaN	1	1	Median	0.44339	0.44534	11.189	2	1	Median	579780000	301820000	277960000	226840000	95330000	131510000	154180000	82486000	71694000	42432000	27622000	14810000	156320000	96384000	59938000	28163	1413	26658	175591;175592;175593;175594;175595	237494;237495;237496;237497;237498;237499;237500;237501	237494			8	
KPSWLTPVPDSHK	2	Unmodified	1490.7882	0.78816332	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		35.98	35.252	3	0.01602	29803	160511_QHF_FH_JSI10i_3	34.101	29.022			0.61663	0.6452	22.273	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66261	0.75526	NaN	1	0	Median	0.57385	0.55118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83822000	60234000	23587000	0	0	0	28682000	15993000	12689000	55140000	44241000	10899000	0	0	0	28164	2588	26659	175596;175597	237502	237502			1	
KPTDGASSSNCVTDISHLVR	1	Unmodified	2143.0328	0.032780052	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	5	2	1	46.897	46.103	3;4	1.7983E-08	38455	160511_QHF_FH_JSI10i_3	99.569	79.201			0.90663	0.92938	12.139	8	2	Median	1.2358	1.0663	NaN	1	0	Median	0.78831	0.92938	12.589	4	1	Median	0.90663	0.85766	2.8827	2	0	Median	1.0563	1.0991	NaN	1	1	Median	537290000	268960000	268320000	43184000	21419000	21764000	260400000	134540000	125860000	211560000	107160000	104400000	22147000	5840100	16307000	28165	1649	26660	175598;175599;175600;175601;175602;175603;175604;175605;175606	237503;237504;237505;237506;237507;237508;237509;237510;237511;237512;237513;237514;237515;237516;237517	237508			15	
KPTETPPVK	2	Unmodified	995.56515	0.56514624	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	8.2399	8.2888	3	0.018885	5807	160511_QHF_FH_JSI12i_3	29.743	17.53			0.80196	0.78287	1.302	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83824	0.79011	NaN	1	0	Median	0.76725	0.7757	NaN	1	0	Median	144820000	63924000	80897000	0	0	0	0	0	0	59755000	29859000	29896000	85066000	34065000	51001000	28166	681	26661	175607;175608	237518	237518			1	
KPTFEVAHLDLAR	1	Unmodified	1495.8147	0.81471242	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	1	By matching		By MS/MS		3	0			2							1		1		52.054	51.263	3	0.0014568	44976	160511_QHF_FH_JSI11i_3	48.405	43.326			0.81248	0.70893	5.4145	2	0	Median	0.90889	0.7366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72629	0.6823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	139500000	64168000	75328000	65127000	32183000	32944000	0	0	0	74370000	31986000	42385000	0	0	0	28167	942	26662	175609;175610	237519	237519			1	
KPTFMDEEVQSILTK	2	Unmodified	1764.8968	0.89678707	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	76.954	75.822	3	2.3874E-05	63476	160511_QHF_FH_JSI10i_3	105.46	101.07			0.87159	0.84297	27.396	4	2	Median	1.2226	1.0004	37.064	2	2	Median	0.79962	0.92316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69977	0.69765	NaN	1	0	Median	292360000	159160000	133200000	68982000	31823000	37159000	66765000	35443000	31321000	0	0	0	156610000	91894000	64720000	28168	2104	26663	175611;175612;175613;175614	237520;237521;237522;237523;237524;237525;237526;237527;237528	237520			9	
KPTPSLLI	1	Unmodified	867.54295	0.54295423	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	51.269	51.152	2	0.049537	43797	160511_QHF_FH_JSI12i_3	37.558	37.558			1.0729	1.0454	19.198	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0026	0.91265	NaN	1	0	Median	1.148	1.1973	NaN	1	0	Median	92855000	46658000	46198000	0	0	0	0	0	0	34941000	19906000	15035000	57914000	26752000	31163000	28169	2333	26664	175615;175616	237529	237529			1	
KPTPVLLPQSK	2	Unmodified	1206.7336	0.73360855	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			31.389	30.028	3	0.042096	25005	160511_QHF_FH_JSI10i_3	27.967	24.204			0.60582	0.70399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60582	0.70399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24601000	16814000	7786600	0	0	0	24601000	16814000	7786600	0	0	0	0	0	0	28170	5285	26665	175617	237530	237530			1	
KPTSQIPETK	2	Unmodified	1127.6186	0.61863837	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.71	4.2			6					1			2	3	2	10.465	8.7284	2;3	0.0026958	6854	160511_QHF_FH_JSI12i_3	58.592	27.905			0.76451	0.76737	18.421	6	1	Median	NaN	NaN	NaN	0	0	Median	0.74522	0.86626	14.676	2	0	Median	0.92942	0.87223	26.158	2	0	Median	0.68782	0.6953	11.483	2	1	Median	750180000	416710000	333470000	0	0	0	113520000	52668000	60849000	139250000	70759000	68488000	497410000	293280000	204130000	28171	4361	26666	175618;175619;175620;175621;175622;175623;175624	237531;237532;237533;237534;237535;237536	237535			6	
KPVAGALDVSFNK	2	Unmodified	1344.7402	0.74015049	4297	Q99627	COPS8	COP9 signalosome complex subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	45.236	44.384	2;3	3.6729E-05	36472	160511_QHF_FH_JSI9i_3	63.662	59.319			1.0439	0.97323	10.761	8	0	Median	1.0745	0.87316	3.6924	2	0	Median	0.86618	0.98673	4.3632	2	0	Median	0.9845	0.93574	7.9695	2	0	Median	1.086	1.1274	3.5701	2	0	Median	2431600000	1278600000	1153000000	360310000	182320000	177990000	663570000	364200000	299370000	624200000	341620000	282580000	783530000	390470000	393060000	28172	4297	26667	175625;175626;175627;175628;175629;175630;175631;175632	237537;237538;237539;237540;237541;237542;237543;237544;237545;237546;237547;237548;237549;237550	237543			14	
KPVEELTEEEK	2	Unmodified	1329.6664	0.66637643	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		3									1	2		17.36	16.941	2;3	0.0018993	13702	160511_QHF_FH_JSI11i_2	60.434	39.563			0.74202	0.91127	23.812	3	1	Median	NaN	NaN	NaN	0	0	Median	0.74202	0.91127	NaN	1	0	Median	0.75805	0.77097	30.784	2	1	Median	NaN	NaN	NaN	0	0	Median	157740000	87155000	70585000	0	0	0	24941000	12452000	12489000	132800000	74703000	58096000	0	0	0	28173	5532	26668	175633;175634;175635	237551;237552;237553;237554	237551			3	
KPVFDLK	2	Unmodified	845.50109	0.50108942	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	30.528	29.823	3	0.0036842	24579	160511_QHF_FH_JSI9i_3	61.999	43.964			0.88139	0.76276	58.933	4	2	Median	1.3104	1.0685	NaN	1	0	Median	1.3779	1.6003	NaN	1	0	Median	0.59283	0.54447	NaN	1	1	Median	0.4388	0.45059	NaN	1	1	Median	538660000	357830000	180830000	76573000	30259000	46314000	53196000	30140000	23056000	138940000	98373000	40570000	269950000	199050000	70894000	28174	4525	26669	175636;175637;175638;175639	237555;237556;237557;237558	237557			4	
KPVILEVTPGGFDQINPATNR	1	Unmodified	2265.2117	0.2117307	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			76.34	74.913	3	3.0089E-07	61591	160511_QHF_FH_JSI9i_3	83.776	76.662			0.90578	0.85955	4.5975	2	0	Median	1.1108	0.88796	NaN	1	0	Median	0.73858	0.83206	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85240000	49221000	36019000	53952000	31370000	22582000	31288000	17851000	13437000	0	0	0	0	0	0	28175	486	26670	175640;175641	237559;237560;237561;237562;237563	237563			5	
KPVIVFVPSR	1	Unmodified	1140.7019	0.70191449	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS	By matching		16	0									2		1	1		55.881	46.737	3	0.0097427	25575	160513_QHF_FH_JSI10Kac_6	37.426	25.2			0.72599	0.7717	36.29	2	0	Median	NaN	NaN	NaN	0	0	Median	0.51567	0.59704	NaN	1	0	Median	1.0221	0.99745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19418000	12487000	6931600	0	0	0	14227000	9575200	4651400	5191900	2911600	2280200	0	0	0	28176	552	26671	175642;175643	237564	237564			1	
KPVPPSEGK	2	Unmodified	937.52328	0.52328142	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	5.7975	5.8453	2	0.031068	3364	160511_QHF_FH_JSI12i_3	40.058	23.282			0.7535	0.73901	11.708	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70831	0.68029	NaN	1	0	Median	0.80158	0.80279	NaN	1	0	Median	148130000	79196000	68937000	0	0	0	0	0	0	55146000	25496000	29650000	92987000	53700000	39287000	28177	4519	26672	175644;175645	237565;237566	237566			2	
KPVSTTNLQDPGVLGCPR	1	Unmodified	1937.9993	0.99929508	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			44.823	43.277	3	0.0014311	36042	160511_QHF_FH_JSI10i_3	44.089	39.987			1.051	1.1646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.051	1.1646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30420000	13285000	17135000	0	0	0	30420000	13285000	17135000	0	0	0	0	0	0	28178	3862	26673	175646	237567	237567			1	
KPVTVHSR	1	Acetyl (K)	964.54541	0.54541385	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		9.859	1.7673	3	0.0048402	3660	160513_QHF_FH_JSI11Kac_6	100.57	77.14			1.3953	1.4369	248.41	2	1	Median	NaN	NaN	NaN	0	0	Median	7.307	8.3229	NaN	1	1	Median	0.26646	0.24808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75098000	48690000	26408000	0	0	0	12894000	1264000	11630000	62204000	47426000	14778000	0	0	0	28179	2129	26674	175647;175648	237568;237569;237570	237568	2230		3	
KPVTVSPTTPTSPTEGEAS	1	Unmodified	1884.9317	0.93165225	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	34.723	34.17	2	3.6768E-05	30615	160511_QHF_FH_JSI11i_1	81.494	80.122			0.9111	0.93971	3.5855	5	2	Median	1.1116	0.91013	NaN	1	0	Median	0.76337	0.91175	5.1072	2	2	Median	1.0066	0.93971	NaN	1	0	Median	0.9111	0.96312	NaN	1	0	Median	353520000	186490000	167030000	67637000	31311000	36326000	154610000	88008000	66603000	69925000	34770000	35156000	61342000	32402000	28940000	28180	5725	26675	175649;175650;175651;175652;175653	237571;237572;237573;237574;237575;237576;237577;237578	237572			8	
KPVVCGVSSLGIDHTSLLGDTVEK	2	Unmodified	2510.305	0.30503873	2235	Q05932	FPGS	Folylpolyglutamate synthase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		69.954	69.954	3	0.0014441	62358	160511_QHF_FH_JSI11i_3	40.404	33.828			1.2362	1.1774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2362	1.1774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11031000	7236500	3794200	0	0	0	0	0	0	11031000	7236500	3794200	0	0	0	28181	2235	26676	175654	237579	237579			1	
KPVVNIITPSHVEER	1	Unmodified	1716.9523	0.95226853	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		39.416	38.215	3;4	3.7118E-07	31425	160511_QHF_FH_JSI9i_3	132.44	127.82			0.85237	0.80959	10.375	5	0	Median	0.968	0.78701	7.6915	2	0	Median	0.65367	0.74517	17.799	2	0	Median	0.85237	0.80959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	965770000	498140000	467630000	558560000	263390000	295180000	323640000	191880000	131760000	83564000	42874000	40690000	0	0	0	28182	2757	26677	175655;175656;175657;175658;175659	237580;237581;237582;237583;237584;237585;237586;237587;237588;237589;237590;237591;237592;237593	237591			14	
KPVVPSVPMASPAPGR	1	Acetyl (K)	1630.8865	0.88649715	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						1	1				1	1		72.961	63.232	3	0.018414	33783	160513_QHF_FH_JSI11Kac_4	58.814	53.034			1.0614	1.1379	19.87	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86326	0.98877	NaN	1	0	Median	1.305	1.3096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6223500	2471700	3751800	0	0	0	2341900	1036100	1305800	3881500	1435500	2446000	0	0	0	28183	4413	26678	175660;175661	237594;237595	237594	3154		1	
KPWQLQGEVTAQK	2	Unmodified	1511.8096	0.80962704	152	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.943	34.486	3	0.0078651	28060	160511_QHF_FH_JSI9i_3	40.066	27.706			1.0359	0.82303	NaN	1	0	Median	1.0359	0.82303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51048000	24516000	26533000	51048000	24516000	26533000	0	0	0	0	0	0	0	0	0	28184	152	26679	175662	237596;237597	237596			2	
KPWTAVDTSVDGR	1	Unmodified	1430.7154	0.7153923	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		33.158	32.443	3	0.00047422	28231	160511_QHF_FH_JSI11i_3	68.972	61.428			2.7522	2.3919	14.896	2	1	Median	3.209	2.6576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3605	2.1528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94344000	26906000	67439000	23230000	7736200	15494000	0	0	0	71114000	19170000	51945000	0	0	0	28185	1005	26680	175663;175664	237598;237599	237598			2	
KPYCNAHYPK	2	Unmodified	1276.6023	0.6022768	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	10.373	9.9816	3	0.00022666	6370	160511_QHF_FH_JSI11i_3	68.893	61.169			0.73859	0.86044	21.649	7	1	Median	1.2329	1.0006	7.8536	2	0	Median	0.73648	0.85046	1.6501	2	0	Median	0.64019	0.60656	3.2348	2	0	Median	0.90289	0.90692	NaN	1	1	Median	636340000	363130000	273220000	128200000	62638000	65562000	199660000	114600000	85061000	221040000	137450000	83586000	87440000	48433000	39007000	28186	2579	26681	175665;175666;175667;175668;175669;175670;175671	237600;237601;237602;237603;237604;237605;237606;237607;237608;237609;237610;237611;237612	237601			12	
KPYCNAHYPK	2	Acetyl (K)	1318.6128	0.61284149	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		24.134	15.031	3	0.029102	9353	160513_QHF_FH_JSI11Kac_6	58.699	49.266			0.21466	0.20755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21466	0.20755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67244000	55835000	11409000	0	0	0	0	0	0	67244000	55835000	11409000	0	0	0	28187	2579	26681	175672	237613	237613			1	
KPYGVLYK	2	Unmodified	966.55385	0.55385327	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	1	2	1	21.735	21.097	2;3	0.0047976	17084	160511_QHF_FH_JSI9i_3	41.448	32.234			0.84471	0.87648	16.621	6	0	Median	1.2147	0.96921	4.9904	2	0	Median	0.8622	0.98777	NaN	1	0	Median	0.74841	0.69945	3.7963	2	0	Median	0.82757	0.82109	NaN	1	0	Median	667200000	332610000	334590000	277020000	117760000	159260000	73782000	37939000	35843000	164250000	89365000	74888000	152140000	87540000	64598000	28188	4762	26682	175673;175674;175675;175676;175677;175678	237614;237615	237615			2	
KPYIWEYSR	1	Unmodified	1240.6241	0.6240581	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.18	3.74			10						1	3	5	3		42.392	41.417	2;3	4.2371E-05	35469	160511_QHF_FH_JSI11i_3	74.173	63.941			0.88439	0.84452	16.408	8	1	Median	0.89977	0.74175	9.7288	2	0	Median	0.76726	0.88037	4.7824	3	1	Plateau	1.023	0.9331	18.983	3	0	Median	NaN	NaN	NaN	0	0	Median	402990000	199070000	203920000	65191000	29835000	35356000	135350000	76226000	59127000	202450000	93011000	109440000	0	0	0	28189	878	26683	175679;175680;175681;175682;175683;175684;175685;175686;175687;175688;175689	237616;237617;237618;237619;237620;237621;237622;237623;237624;237625;237626	237617			9	
KPYPDDENLVEVK	2	Unmodified	1544.7722	0.77223848	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	1				By MS/MS	3	0			1										1	38.36	38.18	2	0.041827	32562	160511_QHF_FH_JSI12i_3	49.3	25.981			1.0383	1.076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0383	1.076	NaN	1	1	Median	24362000	9220600	15141000	0	0	0	0	0	0	0	0	0	24362000	9220600	15141000	28190	1862	26684	175690	237627	237627			1	
KPYQLIAQDNETEKPIDSETK	3	Unmodified	2446.2227	0.22274889	1551	P43003	SLC1A3	Excitatory amino acid transporter 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		39.253	38.252	3;4	1.783E-09	33558	160511_QHF_FH_JSI11i_3	102.37	95.15			0.84686	0.8198	15.998	6	1	Median	1.0169	0.83239	16.13	2	1	Median	0.84686	0.96706	9.3889	2	0	Median	0.75766	0.71554	4.9058	2	0	Median	NaN	NaN	NaN	0	0	Median	207650000	103580000	104070000	71940000	34618000	37322000	64791000	26665000	38126000	70919000	42302000	28617000	0	0	0	28191	1551	26685	175691;175692;175693;175694;175695;175696	237628;237629;237630;237631;237632;237633;237634;237635	237630			8	
KPYRIESDEEEDFENVGK	2	Acetyl (K)	2225.0124	0.012421765	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		61.857	52.149	3	0.02304	28263	160513_QHF_FH_JSI11Kac_6	47.09	37.907			0.97719	0.96394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97719	0.96394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13362000	7099900	6261800	0	0	0	0	0	0	13362000	7099900	6261800	0	0	0	28192	4253	26686	175697	237636	237636	3088		1	
KPYVLNDLEAEASLPEK	2	Unmodified	1914.9939	0.99385857	5578	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		66.838	66.838	3	1.8992E-05	59537	160511_QHF_FH_JSI11i_3	66.068	61.799			1.182	1.1091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.182	1.1091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142160000	71856000	70303000	0	0	0	0	0	0	142160000	71856000	70303000	0	0	0	28193	5578	26687	175698	237637	237637			1	
KQDADSLQR	1	Unmodified	1059.5309	0.530886	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	2.61	6	9	6				1			3	6	6	7	5.7414	5.057	2;3	4.9951E-07	3438	160511_QHF_FH_JSI12i_1	117.01	66.475			0.87706	0.93205	11.744	18	3	Median	1.1656	0.975	11.381	3	0	Median	0.82594	0.99296	12.876	4	2	Median	1.0298	0.96877	11.602	5	1	Median	0.83654	0.85675	8.5847	6	0	Median	7552100000	3965800000	3586300000	1044300000	512870000	531390000	1315500000	685090000	630390000	2877800000	1491800000	1386100000	2314500000	1276000000	1038500000	28194	1051	26688	175699;175700;175701;175702;175703;175704;175705;175706;175707;175708;175709;175710;175711;175712;175713;175714;175715;175716;175717;175718;175719;175720	237638;237639;237640;237641;237642;237643;237644;237645;237646;237647;237648;237649;237650;237651;237652;237653;237654;237655;237656;237657;237658;237659;237660;237661;237662;237663;237664;237665;237666;237667;237668;237669	237649			32	
KQDAFYK	2	Unmodified	898.45487	0.45486751	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		4	4							1		3	4	9.968	9.7248	2;3	0.011656	7214	160511_QHF_FH_JSI11i_3	70.919	41.346			1.122	1.135	17.188	8	2	Median	1.9189	1.6332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1744	1.1267	9.0542	3	1	Median	1.0072	1.0947	10.853	4	0	Median	2086600000	833440000	1253100000	197200000	33877000	163320000	0	0	0	726140000	280110000	446030000	1163200000	519450000	643780000	28195	5098	26689	175721;175722;175723;175724;175725;175726;175727;175728	237670;237671;237672;237673;237674;237675;237676;237677;237678	237670			9	
KQDEEINQIEEERTK	2	Unmodified	1887.9174	0.91739917	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			23.645	22.775	3	0.0040111	19712	160511_QHF_FH_JSI10i_2	44.294	28.41			0.33394	0.39687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33394	0.39687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15452000	12135000	3316700	0	0	0	15452000	12135000	3316700	0	0	0	0	0	0	28196	4761	26690	175729	237679	237679			1	
KQDEPIDLFMIEIMEMK	2	Unmodified	2109.0196	0.019621094	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	13.2	5.6		1							4	2	1		2	98.176	91.419	2;3	3.4952E-82	48112	160513_QHF_FH_JSI12Kac_6	219.29	191			0.86568	0.95443	25.405	5	4	Median	1.1401	0.97729	47.962	2	2	Median	0.8006	0.95443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96447	1.02	15.708	2	1	Median	1171400000	643100000	528310000	274920000	138880000	136040000	414570000	251830000	162730000	0	0	0	481930000	252390000	229540000	28197	1494	26691	175730;175731;175732;175733;175734	237680;237681;237682;237683;237684;237685	237683			6	
KQDFPLVK	2	Unmodified	973.55967	0.55966693	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	30.15	29.679	3	0.019859	25073	160511_QHF_FH_JSI12i_3	30.254	18.041			1.1396	1.1044	11.13	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1396	1.3503	NaN	1	0	Median	1.2223	1.1241	NaN	1	0	Median	1.0943	1.1044	NaN	1	0	Median	144110000	65595000	78516000	0	0	0	8609900	3672000	4937900	51419000	23521000	27898000	84082000	38402000	45680000	28198	1455	26692	175735;175736;175737	237686;237687	237687			2	
KQDGFTHILLSTK	2	Unmodified	1486.8144	0.81437807	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	3	0			4							2	1		1	49.191	47.936	3	0.0004335	40022	160511_QHF_FH_JSI12i_3	70.26	41.933			2.7304	2.672	122.93	4	2	Linear	0.68253	0.57344	80.763	2	1	Median	0.63334	0.713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5.8136	5.9427	NaN	1	1	Median	361340000	71646000	289700000	43761000	24828000	18933000	22981000	11267000	11714000	0	0	0	294600000	35551000	259050000	28199	5488	26693	175738;175739;175740;175741	237688;237689;237690	237690			3	
KQDLYMWLSNSPHGPSAK	2	Unmodified	2057.9993	0.99929508	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			12						4	4	4	3	5	60.958	58.179	3;4	2.6899E-07	49474	160511_QHF_FH_JSI12i_3	106.75	90.063			0.96608	0.93951	19.889	13	1	Median	1.0828	0.90055	23.68	4	0	Median	0.86854	1.0014	25.971	4	1	Median	1.141	1.0668	1.6193	3	0	Plateau	0.86716	0.87572	6.528	2	0	Median	1623300000	832730000	790540000	380510000	176330000	204180000	532610000	333680000	198930000	464910000	202450000	262460000	245240000	120280000	124960000	28200	3723	26694	175742;175743;175744;175745;175746;175747;175748;175749;175750;175751;175752;175753;175754;175755;175756;175757	237691;237692;237693;237694;237695;237696;237697;237698;237699;237700;237701;237702;237703;237704;237705;237706;237707;237708;237709;237710;237711;237712;237713;237714;237715	237710			23	
KQDPPVTHDLR	1	Unmodified	1304.6837	0.68369824	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								3	2	1	11.912	11.524	2;3;4	0.00022101	8896	160511_QHF_FH_JSI11i_3	67.519	51.7			0.87159	0.89272	72.864	5	1	Median	NaN	NaN	NaN	0	0	Median	0.76227	0.89272	96.993	3	1	Median	0.97269	0.92083	16.078	2	0	Median	NaN	NaN	NaN	0	0	Median	632740000	197910000	434840000	0	0	0	394170000	69617000	324550000	238570000	128290000	110280000	0	0	0	28201	1262	26695	175758;175759;175760;175761;175762;175763	237716;237717;237718;237719;237720;237721;237722;237723	237718			7	
KQDPYLLK	2	Unmodified	1003.5702	0.57023162	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	17.51	17.315	2	0.040445	17500	160511_QHF_FH_JSI12i_3	55.37	26.22			1.0916	1.1323	15.949	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.94094	1.0539	NaN	1	0	Median	0.90937	0.83462	NaN	1	1	Median	1.1282	1.1323	NaN	1	1	Median	113950000	61202000	52747000	0	0	0	22069000	13075000	8993500	35148000	16261000	18887000	56732000	31865000	24867000	28202	5635	26696	175764;175765;175766	237724;237725;237726	237726			3	
KQDTISPEFEPVFSLFAFTNK	2	Unmodified	2444.2264	0.22637771	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.92	101.85	3	1.215E-25	91028	160511_QHF_FH_JSI11i_3	142.85	124.5			1.2556	1.3712	38.296	2	2	Median	NaN	NaN	NaN	0	0	Median	0.89105	1.0459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7692	1.7977	NaN	1	1	Median	332680000	183610000	149070000	0	0	0	96778000	54407000	42371000	0	0	0	235900000	129210000	106700000	28203	3050	26697	175767;175768;175769	237727;237728;237729	237727			3	
KQEAESAVR	1	Unmodified	1016.5251	0.52507234	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		4.7686	4.5198	2	0.0028295	2356	160511_QHF_FH_JSI11i_3	63.184	25.626			1.1783	1.1115	7.2521	4	0	Median	1.1602	1.0125	NaN	1	0	Median	0.88163	1.0766	NaN	1	0	Median	1.2079	1.1707	2.8207	2	0	Median	NaN	NaN	NaN	0	0	Median	296630000	136420000	160210000	57760000	20882000	36878000	83805000	49505000	34301000	155060000	66034000	89027000	0	0	0	28204	5032	26698	175770;175771;175772;175773	237730;237731	237730			2	
KQEAEWK	2	Unmodified	917.46068	0.46068117	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			4									2	2	6.9871	7.0359	2;3	0.0076003	4479	160511_QHF_FH_JSI12i_3	51.662	40.789			1.2967	1.2899	6.969	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2977	1.2425	9.4732	2	0	Median	1.2967	1.304	5.7083	2	0	Median	2297500000	1124100000	1173400000	0	0	0	0	0	0	734480000	283860000	450620000	1563000000	840200000	722770000	28205	930	26699	175774;175775;175776;175777	237732;237733;237734;237735	237734			4	
KQEDSVTELTVEDSGESLEDLMAK	2	Unmodified	2652.2324	0.23238688	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	86.958	86.65	3	6.6959E-08	78915	160511_QHF_FH_JSI12i_1	74.579	71.117			1.1861	1.2727	33.69	2	2	Median	NaN	NaN	NaN	0	0	Median	1.429	1.6151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9845	1.0029	NaN	1	1	Median	49352000	22124000	27227000	0	0	0	30780000	11362000	19418000	0	0	0	18571000	10762000	7808900	28206	4615	26700	175778;175779	237736;237737	237736			2	
KQEEFDVANNGSSQANK	2	Unmodified	1864.8551	0.85513326	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	18.029	17.605	3	8.4461E-05	14318	160511_QHF_FH_JSI11i_2	78.234	71.386			1.2729	1.3318	40.189	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7724	1.7695	NaN	1	1	Median	0.9142	1.0023	NaN	1	1	Median	57749000	33135000	24614000	0	0	0	0	0	0	28831000	13305000	15526000	28918000	19830000	9088000	28207	1316	26701	175780;175781;175782	237738;237739;237740	237739			3	
KQEELNR	1	Unmodified	915.47739	0.47739386	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	4.4512	4.2355	2	0.014779	1981	160511_QHF_FH_JSI12i_3	66.073	14.286			1.0933	1.088	49.243	5	1	Median	2.4022	2.0576	NaN	1	0	Median	0.63214	0.72625	NaN	1	0	Median	0.91845	0.90569	58.043	2	1	Median	1.0933	1.088	NaN	1	0	Median	670720000	342230000	328490000	7227900	2737400	4490500	112600000	84351000	28247000	490350000	227320000	263020000	60547000	27817000	32731000	28208	210	26702	175783;175784;175785;175786;175787	237741;237742;237743;237744	237744			4	
KQEETAVLEEDSADWEK	2	Unmodified	2005.9116	0.91164509	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	2	3	49.035	48.235	2;3	2.6287E-06	43636	160511_QHF_FH_JSI10i_1	140.84	120.26			1.0192	1.0827	15.928	11	3	Median	1.0192	0.87596	17.425	3	2	Median	0.78995	0.94329	10.994	3	0	Plateau	1.1894	1.179	12.054	2	1	Median	1.1	1.2532	6.4121	3	0	Plateau	975710000	430140000	545570000	157900000	71753000	86144000	325640000	150050000	175590000	198180000	81292000	116890000	293990000	127050000	166950000	28209	3961	26703	175788;175789;175790;175791;175792;175793;175794;175795;175796;175797;175798	237745;237746;237747;237748;237749;237750;237751;237752;237753;237754;237755;237756;237757;237758;237759;237760;237761;237762	237754			18	
KQEFLEK	2	Unmodified	920.49673	0.49673232	4708	Q9H444;P59074	CHMP4B;CHMP4BP1	Charged multivesicular body protein 4b;Putative charged multivesicular body protein 4B-like protein CHMP4BP1	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	13.064	12.958	2;3	0.0025158	10273	160511_QHF_FH_JSI11i_3	71.501	52.77			0.72585	0.75748	22.773	4	1	Median	NaN	NaN	NaN	0	0	Median	0.41291	0.51252	NaN	1	1	Median	0.9069	0.86413	NaN	1	0	Median	0.72585	0.75748	4.8798	2	0	Median	1401500000	703470000	698080000	0	0	0	87552000	48789000	38763000	247850000	121000000	126850000	1066100000	533680000	532470000	28210	4708	26704	175799;175800;175801;175802	237763;237764;237765;237766;237767;237768;237769	237763			7	
KQEFLEQK	2	Unmodified	1048.5553	0.55530983	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		13.288	13.288	2	0.0081004	10731	160511_QHF_FH_JSI11i_3	76.1	24.313			0.73482	0.68632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73482	0.68632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50663000	23010000	27653000	0	0	0	0	0	0	50663000	23010000	27653000	0	0	0	28211	4534	26705	175803	237770	237770			1	
KQEGLLK	2	Unmodified	814.49125	0.49125301	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.5	0.5		3	3								1	4	1	9.2706	9.1375	2;3	0.007942	6289	160511_QHF_FH_JSI12i_3	47.849	12.553			1.0157	1.0241	58.293	6	3	Median	NaN	NaN	NaN	0	0	Median	0.62869	0.77827	NaN	1	0	Median	1.0978	1.108	72.923	4	3	Median	1.0404	1.0731	NaN	1	0	Median	1026300000	574460000	451840000	0	0	0	99584000	61630000	37954000	444120000	251900000	192220000	482600000	260930000	221670000	28212	3766	26706	175804;175805;175806;175807;175808;175809	237771;237772;237773;237774;237775	237774			5	
KQEGPATQVSK	2	Unmodified	1171.6197	0.619701	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	6.7723	6.5732	2	1.8754E-05	4071	160511_QHF_FH_JSI12i_3	103.91	60.102			0.97725	0.96054	2.9969	4	0	Median	1.1422	0.99454	NaN	1	0	Median	0.8014	0.9823	NaN	1	0	Median	1.0248	0.93895	NaN	1	0	Median	0.93192	0.93926	NaN	1	0	Median	209670000	106100000	103570000	24337000	10535000	13802000	33308000	18560000	14748000	69776000	34511000	35265000	82253000	42493000	39760000	28213	2409	26707	175810;175811;175812;175813	237776;237777;237778	237778			3	
KQEGTPEGLYL	1	Unmodified	1233.6241	0.62411768	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	49.372	48.39	2	0.013127	41637	160511_QHF_FH_JSI11i_2	44.318	33.153			1.1577	1.1706	35.074	4	0	Median	1.0269	0.89655	NaN	1	0	Median	1.5164	1.8319	NaN	1	0	Median	0.92156	0.93032	NaN	1	0	Median	1.3051	1.473	NaN	1	0	Median	255700000	116760000	138940000	57307000	26839000	30468000	62959000	28334000	34625000	70827000	33507000	37320000	64606000	28083000	36523000	28214	1983	26708	175814;175815;175816;175817	237779;237780;237781	237781			3	
KQEIEKPVAVSELFTTLPIVQGK	3	Unmodified	2553.4418	0.44179021	2086	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							1	2	2	1	96.005	95.807	3;4	6.7014E-08	84509	160511_QHF_FH_JSI11i_3	73.758	71.109			0.9163	1.0085	10.887	6	2	Median	1.4142	1.2067	NaN	1	1	Median	0.88279	1.0226	3.6213	2	0	Median	0.99595	0.94593	10.717	2	1	Median	0.88382	0.9352	NaN	1	0	Median	180100000	82286000	97817000	9698800	3923500	5775200	43985000	18526000	25460000	105100000	49211000	55893000	21316000	10627000	10690000	28215	2086	26709	175818;175819;175820;175821;175822;175823	237782;237783;237784;237785;237786;237787;237788;237789;237790	237782			9	
KQEILKK	3	Unmodified	885.56475	0.56475231	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			5.9644	5.4681	3	0.017715	3544	160511_QHF_FH_JSI10i_3	52.403	14.269			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28216	5497	26710	175824	237791	237791			1	
KQEIVAEK	2	Unmodified	943.53385	0.53384611	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.6	0.49		2	3							1		3	1	7.7132	7.598	2;3	0.0038962	5061	160511_QHF_FH_JSI12i_3	70.552	26.202			1.5903	1.4953	42.039	5	1	Median	1.19	1.0181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5042	2.4648	32.784	3	1	Median	1.3552	1.3583	NaN	1	0	Median	431660000	162390000	269280000	37818000	15903000	21915000	0	0	0	270130000	87866000	182260000	123720000	58620000	65100000	28217	5411	26711	175825;175826;175827;175828;175829	237792;237793;237794;237795	237795			4	
KQELDEHEK	2	Unmodified	1154.5568	0.5567664	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.9301	4.9301	2	0.01332	2639	160511_QHF_FH_JSI11i_3	46.891	27.797			1.8388	1.7181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8388	1.7181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19834000	5987400	13846000	0	0	0	0	0	0	19834000	5987400	13846000	0	0	0	28218	28	26712	175830	237796	237796			1	
KQELIEDLQPDINQNVQK	2	Unmodified	2151.1172	0.11716161	5341	Q9UJC3	HOOK1	Protein Hook homolog 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	58.984	58.722	3	0.0018827	50526	160511_QHF_FH_JSI12i_3	47.752	27.661			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28219	5341	26713	175831;175832	237797;237798	237798			2	
KQELLEALTK	2	Unmodified	1171.6812	0.68123863	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.48		10	11						3	4	5	7	8	47.109	45.247	2;3	1.9906E-06	38424	160511_QHF_FH_JSI12i_3	126.19	77.4			1.0304	0.88725	81.688	24	21	Median	1.0304	0.88725	68.897	4	2	Median	0.74209	0.8571	60.856	5	4	Median	0.63337	0.61783	88.94	7	7	Median	1.4234	1.5941	102.02	8	8	Median	8931400000	4047800000	4883600000	671200000	307120000	364080000	1116900000	674110000	442810000	3052400000	1221300000	1831100000	4090900000	1845300000	2245600000	28220	1023	26714	175833;175834;175835;175836;175837;175838;175839;175840;175841;175842;175843;175844;175845;175846;175847;175848;175849;175850;175851;175852;175853;175854;175855;175856	237799;237800;237801;237802;237803;237804;237805;237806;237807;237808;237809;237810;237811;237812;237813;237814;237815;237816;237817;237818;237819;237820;237821;237822;237823;237824;237825;237826;237827;237828;237829;237830	237827			32	
KQELQPGTAYK	2	Unmodified	1261.6667	0.6666512	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	14.718	14.394	2;3	5.3192E-07	11681	160511_QHF_FH_JSI11i_3	128.17	98.499			0.9667	1.008	13.889	10	0	Median	0.93952	0.82317	NaN	1	0	Median	0.77886	0.95405	10.275	2	0	Median	1.1428	1.129	8.0538	4	0	Median	0.90091	0.88704	17.348	3	0	Median	1012500000	497090000	515410000	36876000	18480000	18395000	107730000	63766000	43959000	341730000	139400000	202330000	526170000	275440000	250730000	28221	1743	26715	175857;175858;175859;175860;175861;175862;175863;175864;175865;175866	237831;237832;237833;237834;237835;237836;237837;237838;237839;237840;237841;237842	237832			12	
KQENALKPK	3	Unmodified	1054.6135	0.61349341	3311	Q86TS9	MRPL52	39S ribosomal protein L52, mitochondrial	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			5.2054	4.7284	3	0.031354	2770	160511_QHF_FH_JSI10i_3	40.058	16.739			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28222	3311	26716	175867	237843	237843			1	
KQEQANNPFYIK	2	Unmodified	1478.7518	0.75177781	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	32.685	32.638	2;3	7.4615E-06	27610	160511_QHF_FH_JSI12i_3	127.42	99.411			0.8177	0.81659	65.275	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62737	0.5954	108.26	2	1	Median	0.8177	0.81659	8.0567	2	0	Median	335910000	203460000	132450000	0	0	0	0	0	0	64830000	44637000	20194000	271080000	158830000	112250000	28223	179	26717	175868;175869;175870;175871	237844;237845;237846;237847;237848	237848			5	
KQEQLTPGVVYVR	1	Unmodified	1515.8409	0.84092717	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	40.774	40.295	3	0.001746	35236	160511_QHF_FH_JSI11i_3	51.726	46.742			0.7244	0.72499	19.004	6	2	Median	0.76447	0.65689	NaN	1	0	Median	0.81125	0.99964	NaN	1	0	Median	0.79194	0.76427	24.859	2	0	Median	0.62159	0.72499	13.501	2	2	Median	425290000	233410000	191880000	43649000	24372000	19277000	71334000	41082000	30252000	164780000	94511000	70269000	145530000	73448000	72079000	28224	4547	26718	175872;175873;175874;175875;175876;175877	237849;237850;237851;237852;237853	237849			4	
KQESTVMVLR	1	Unmodified	1189.6489	0.64889264	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		23.539	23.539	2;3	0.0032976	19946	160511_QHF_FH_JSI11i_3	47.894	25.901			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28225	5315	26719	175878;175879	237854;237855	237854			2	
KQETSWGLTEINAFK	2	Unmodified	1750.889	0.88899957	395	O43933	PEX1	Peroxisome biogenesis factor 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.907	68.609	3	0.00029421	59361	160511_QHF_FH_JSI12i_3	63.134	39.805			0.89965	0.92801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89965	0.92801	NaN	1	0	Median	23375000	12184000	11191000	0	0	0	0	0	0	0	0	0	23375000	12184000	11191000	28226	395	26720	175880	237856	237856			1	
KQEVDLQQLIR	1	Unmodified	1368.7725	0.77251325	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	54.995	54.678	2;3	9.412E-05	46785	160511_QHF_FH_JSI12i_3	72.34	58.531			0.80928	0.83716	126.73	6	2	Median	NaN	NaN	NaN	0	0	Median	0.083678	0.1032	NaN	1	1	Median	1.0954	1.0189	159.71	3	1	Median	0.80928	0.83716	8.3742	2	0	Median	1936900000	1753600000	183300000	0	0	0	555390000	539650000	15734000	1228800000	1128600000	100170000	152680000	85283000	67394000	28227	417	26721	175881;175882;175883;175884;175885;175886	237857;237858;237859;237860;237861;237862	237862			6	
KQEVQAWDGEVR	1	Unmodified	1443.7106	0.71064128	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	27.502	26.741	2;3	0.0018187	23458	160511_QHF_FH_JSI10i_2	59.227	48.281			0.95019	1.0639	26.415	6	5	Median	1.5337	1.3039	NaN	1	1	Median	0.79393	0.97219	13.413	2	2	Median	1.1446	1.1649	NaN	1	0	Median	0.75655	0.80838	38.181	2	2	Median	354670000	177140000	177530000	40987000	12363000	28623000	182000000	95406000	86590000	27621000	15180000	12441000	104060000	54188000	49877000	28228	1573	26722	175887;175888;175889;175890;175891;175892	237863;237864;237865;237866;237867;237868;237869	237868			7	
KQEYLEVQR	1	Unmodified	1191.6248	0.62478638	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	4	2	18.962	18.504	2;3	0.00020247	15753	160511_QHF_FH_JSI9i_2	64.374	27.789			0.98534	0.92741	21.711	9	2	Median	1.0387	0.92741	NaN	1	0	Median	1.0668	1.2977	10.771	2	1	Median	0.99683	0.94889	12.276	4	1	Median	0.69701	0.74299	8.0616	2	0	Median	459060000	240730000	218330000	36180000	17308000	18872000	88942000	46866000	42076000	254820000	131510000	123310000	79118000	45055000	34063000	28229	225	26723	175893;175894;175895;175896;175897;175898;175899;175900;175901	237870;237871;237872;237873;237874;237875;237876;237877;237878	237873			9	
KQGEDNSTAQDTEELEK	2	Unmodified	1920.8549	0.85485849	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	18.723	15.966	2;3	1.9916E-05	13271	160511_QHF_FH_JSI9i_1	81.854	70.592			1.2954	1.2628	17.136	6	2	Median	1.4546	1.2047	NaN	1	0	Median	0.96008	1.1459	NaN	1	0	Median	1.0861	1.0795	29.811	2	1	Median	1.3007	1.3613	3.9691	2	1	Median	198660000	95188000	103470000	45923000	18366000	27558000	53913000	24079000	29835000	46393000	24923000	21469000	52429000	27820000	24609000	28230	3323	26724	175902;175903;175904;175905;175906;175907;175908	237879;237880;237881;237882;237883;237884;237885;237886;237887	237885			9	
KQGEGSSGVSSLLLHPEPVPGPEK	2	Unmodified	2428.2598	0.2598031	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		58.588	58.588	4	0.0012371	51995	160511_QHF_FH_JSI11i_3	40.756	32.366			0.63223	0.59199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63223	0.59199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43383000	29589000	13793000	0	0	0	0	0	0	43383000	29589000	13793000	0	0	0	28231	484	26725	175909	237888	237888			1	
KQGFDLNVPGGEIDASLK	2	Unmodified	1886.9738	0.97379183	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.574	70.276	3	0.026866	60881	160511_QHF_FH_JSI12i_3	32.156	22.74			1.4248	1.4191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4248	1.4191	NaN	1	1	Median	42875000	19315000	23561000	0	0	0	0	0	0	0	0	0	42875000	19315000	23561000	28232	2286	26726	175910	237889	237889			1	
KQGGLGPMNIPLVSDPK	2	Oxidation (M)	1765.9397	0.93965493	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	55.771	54.848	3	0.00073834	45929	160511_QHF_FH_JSI10i_3	54.234	43.895			0.96908	1.0158	6.0776	7	0	Median	1.2819	1.0205	0.65182	2	0	Median	0.90119	1.0552	0.47998	2	0	Median	0.98833	0.94479	3.8378	2	0	Median	0.88068	0.91445	NaN	1	0	Median	1514000000	749770000	764210000	373770000	164010000	209760000	540750000	286440000	254300000	465220000	223790000	241430000	134250000	75526000	58725000	28233	2249	26727	175911;175912;175913;175914;175915;175916;175917	237890;237891;237892;237893;237894;237895;237896;237897;237898;237899;237900;237901;237902;237903;237904;237905;237906;237907	237896		1862	18	
KQGGLGPMNIPLVSDPK	2	Unmodified	1749.9447	0.94474031	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	4	3	3	68.873	68.034	2;3	3.1304E-05	56111	160511_QHF_FH_JSI9i_3	77.562	66.506			0.93564	0.9593	16.721	13	2	Median	1.2081	0.974	5.1392	3	0	Median	0.90138	1.0199	11.742	4	2	Median	1.0101	0.93318	2.3346	3	0	Plateau	0.68162	0.6958	29.19	3	0	Median	9725300000	4899400000	4826000000	2154700000	931060000	1223700000	3072700000	1599400000	1473300000	3184800000	1658000000	1526800000	1313100000	710860000	602270000	28234	2249	26727	175918;175919;175920;175921;175922;175923;175924;175925;175926;175927;175928;175929;175930	237908;237909;237910;237911;237912;237913;237914;237915;237916;237917;237918;237919;237920;237921;237922;237923;237924;237925;237926;237927;237928;237929;237930;237931;237932;237933;237934;237935;237936;237937;237938;237939;237940;237941;237942;237943;237944;237945;237946	237930			39	
KQGHDQKAAAK	3	Acetyl (K)	1222.6418	0.64183343	5683	Q9Y5V0	ZNF706	Zinc finger protein 706	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	4.7572	-2.7856	3	0.0022849	1339	160513_QHF_FH_JSI11Kac_6	73.632	57.876			0.8003	0.86283	17.645	4	0	Median	1.2959	1.1358	NaN	1	0	Median	0.8108	0.93176	NaN	1	0	Median	0.78995	0.77113	NaN	1	0	Median	0.73788	0.799	NaN	1	0	Median	38508000	21123000	17386000	2957100	1197200	1759900	12249000	6497300	5752000	11562000	5829700	5732700	11740000	7598700	4141100	28235	5683	26728	175931;175932;175933;175934	237947;237948;237949;237950	237947	3525		4	
KQGLEQFINK	2	Unmodified	1203.6612	0.66117189	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	36.587	35.778	2;3	0.0022817	29082	160511_QHF_FH_JSI9i_3	57.347	42.668			1.6934	1.5132	111.73	2	2	Median	4.0786	3.3342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70309	0.68672	NaN	1	1	Median	65322000	30664000	34658000	20030000	4410700	15619000	0	0	0	0	0	0	45292000	26253000	19040000	28236	419	26729	175935;175936	237951;237952	237951			2	
KQGLLPLTFADPADYNK	2	Unmodified	1889.9887	0.98871362	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	80.256	79.476	3	4.4513E-05	68855	160511_QHF_FH_JSI12i_3	72.583	62.244			0.94948	1.0195	10.652	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83366	0.9455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0814	1.0992	NaN	1	0	Median	57578000	24409000	33169000	0	0	0	28780000	11061000	17719000	0	0	0	28798000	13347000	15451000	28237	4315	26730	175937;175938	237953;237954;237955;237956	237955			4	
KQHLEIELK	2	Acetyl (K)	1178.6659	0.66592292	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		50.673	40.961	3	0.042997	22229	160513_QHF_FH_JSI11Kac_6	33.057	14.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2667900	2667900	0	0	0	0	0	0	0	2667900	2667900	0	0	0	0	28238	1085	26731	175939	237957	237957			1	
KQHLVEVR	1	Acetyl (K)	1049.5982	0.5981777	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.721	16.609	3	0.040676	10198	160513_QHF_FH_JSI11Kac_6	38.303	12.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28239	2517	26732	175940	237958	237958			1	
KQIQFADDMQEFTK	2	Acetyl (K);Oxidation (M)	1785.8244	0.82435041	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	67.391	58.174	3	0.026621	29950	160513_QHF_FH_JSI12Kac_3	45.864	41.548			0.75435	0.82786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75435	0.82786	NaN	1	0	Median	5076900	2982600	2094300	0	0	0	0	0	0	0	0	0	5076900	2982600	2094300	28240	389	26733	175941	237959	237959	204		1	
KQISEQLNALNK	2	Unmodified	1384.7674	0.76742787	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				73.127	72.292	3	0.06183	63825	160511_QHF_FH_JSI9i_2	12.767	0			1.0696	0.90039	NaN	1	0	Median	1.0696	0.90039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7760300	3227700	4532600	7760300	3227700	4532600	0	0	0	0	0	0	0	0	0	28241	5458	26734	175942	237960	237960			1	
KQLATKAAR	2	2 Acetyl (K)	1069.6244	0.62439245	2078;2133	P68431;Q71DI3;Q6NXT2;P84243	HIST1H3A;HIST2H3A;H3F3C;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.3	no	no	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	1.6				1	4	2	4	4	5	4	6	4	6	26.508	17.336	2	4.9246E-06	1254	160513_QHF_FH_JSI9Kac_4	128.86	65.439			1.2038	1.2519	184.32	16	1	Median	1.1379	1.0169	4.7564	4	0	Median	1.2357	1.4821	320.46	5	1	Median	1.2934	1.2776	2.0303	4	0	Median	0.9947	1.093	1.2231	3	0	Plateau	7763800000	3944900000	3819000000	4899300000	2281500000	2617800000	1686200000	754620000	931620000	360700000	140900000	219790000	817600000	767880000	49721000	28242	2078;2133	26735	175943;175944;175945;175946;175947;175948;175949;175950;175951;175952;175953;175954;175955;175956;175957;175958;175959;175960;175961;175962	237961;237962;237963;237964;237965;237966;237967;237968;237969;237970;237971;237972;237973;237974;237975;237976;237977;237978;237979;237980;237981	237966	2164;2165		21	
KQLATKAARK	3	2 Acetyl (K)	1197.7194	0.71935547	2078;2133	P68431;Q71DI3;Q6NXT2;P84243	HIST1H3A;HIST2H3A;H3F3C;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.3	no	no	2	0	0	3	By MS/MS	By MS/MS		By MS/MS	15.6	0.49								2	3	1	2		2	22.323	14.339	3	0.0033602	8342	160513_QHF_FH_JSI12Kac_6	71.03	25.201			1.4761	1.6383	46.133	5	0	Median	0.83831	0.70444	NaN	1	0	Median	1.8523	2.1608	8.2098	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4223	1.5767	5.4226	2	0	Median	61030000	22607000	38423000	7081500	3711500	3370000	35781000	11600000	24181000	0	0	0	18167000	7295400	10871000	28243	2078;2133	26736	175963;175964;175965;175966;175967	237982;237983;237984;237985;237986;237987	237986	2164;2165;2235		5	
KQLATKVAR	2	2 Acetyl (K)	1097.6557	0.65569258	2753	Q16695	HIST3H3	Histone H3.1t	yes	yes	2	0	0	2		By MS/MS	By MS/MS		14	0							2				1	1		40.66	30.741	2	0.03919	17744	160513_QHF_FH_JSI10Kac_4	68.016	10.969			0.84381	0.91327	13.482	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84055	1.0046	NaN	1	0	Median	0.84707	0.83023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28304000	15527000	12776000	0	0	0	15791000	8431400	7359600	12513000	7096100	5416900	0	0	0	28244	2753	26737	175968;175969	237988;237989	237988			2	
KQNADPQAVTMPATETK	2	Unmodified	1828.8989	0.89891233	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		27.6	26.565	3	0.010204	22291	160511_QHF_FH_JSI11i_2	40.844	33.064			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9951300	0	9951300	9951300	0	9951300	0	0	0	0	0	0	0	0	0	28245	5436	26738	175970;175971	237990;237991	237991			2	
KQPAGNYSLSSVLPNAPDMAQFK	2	Unmodified	2462.2264	0.22639448	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		82.784	81.822	3	5.5659E-15	67250	160511_QHF_FH_JSI9i_3	122.19	114.92			0.931	0.81767	23.17	4	1	Median	1.2482	1.0232	29.933	2	1	Median	0.65465	0.76411	NaN	1	0	Median	0.86823	0.80743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277600000	140150000	137450000	111920000	47608000	64310000	63063000	33465000	29598000	102620000	59080000	43537000	0	0	0	28246	4881	26739	175972;175973;175974;175975;175976	237992;237993;237994;237995;237996;237997	237996			6	
KQPALDVLYDVMK	2	Unmodified	1518.8116	0.81160087	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							2	4	4	2	82.122	81.551	2;3	2.2958E-15	70674	160511_QHF_FH_JSI12i_3	161.48	135.86			0.97832	0.92965	19.722	12	1	Median	1.337	1.14	42.089	2	1	Median	1.0129	1.2137	16.257	4	0	Median	1.0673	1.012	9.1789	4	0	Linear	0.91427	0.92965	1.2097	2	0	Median	2133100000	1208300000	924820000	108960000	49259000	59700000	333710000	179210000	154510000	542520000	327490000	215030000	1147900000	652340000	495580000	28247	2502	26740	175977;175978;175979;175980;175981;175982;175983;175984;175985;175986;175987;175988	237998;237999;238000;238001;238002;238003;238004;238005;238006;238007;238008;238009;238010;238011;238012;238013;238014;238015;238016;238017;238018;238019;238020;238021;238022;238023;238024	238020			25	
KQPALDVLYDVMK	2	Oxidation (M)	1534.8065	0.8065155	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	1		By MS/MS		By MS/MS	3	0			2								1		1	61.89	60.993	3	0.002291	52468	160511_QHF_FH_JSI12i_3	51.939	44.214			1.1754	1.2799	34.214	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3934	1.6303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99148	1.0049	NaN	1	0	Median	184070000	73018000	111050000	0	0	0	14952000	5963400	8988500	0	0	0	169120000	67055000	102060000	28248	2502	26740	175989;175990	238025;238026;238027	238026		1979	3	
KQPDEEPMDMVVEK	2	Unmodified	1673.7641	0.76405833	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		1.25	0.433	3	1								1	2	1		45.714	44.963	3	0.00030977	40694	160511_QHF_FH_JSI11i_1	64.52	45.126			1.1781	1.1857	79.262	4	1	Median	1.5938	1.2758	NaN	1	0	Median	0.52046	0.61697	120.3	2	1	Median	1.1457	1.1019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134880000	62083000	72798000	26352000	10396000	15956000	60163000	30401000	29763000	48366000	21286000	27080000	0	0	0	28249	421	26741	175991;175992;175993;175994	238028;238029	238028			2	
KQPLDTLK	2	Unmodified	941.55458	0.55458155	3956	Q969Z3	MARC2	Mitochondrial amidoxime reducing component 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	17.745	17.765	2	0.050734	14329	160511_QHF_FH_JSI12i_3	51.346	12.554			0.60472	0.5756	34.065	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48718	0.45239	NaN	1	1	Median	0.75061	0.73237	NaN	1	1	Median	61485000	36868000	24617000	0	0	0	0	0	0	16244000	10084000	6160300	45241000	26784000	18457000	28250	3956	26742	175995;175996	238030;238031	238031			2	
KQPMLDAATGK	2	Unmodified	1158.6067	0.60669348	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	18.575	18.36	2;3	1.7741E-05	15308	160511_QHF_FH_JSI11i_3	104.43	67.275			0.77267	0.77263	8.9853	5	1	Median	NaN	NaN	NaN	0	0	Median	0.669	0.76483	NaN	1	1	Median	0.76842	0.71373	12.273	2	0	Median	0.78969	0.8036	5.5581	2	0	Median	583710000	282210000	301490000	0	0	0	32073000	19099000	12974000	187950000	86855000	101090000	363680000	176260000	187420000	28251	1142	26743	175997;175998;175999;176000;176001	238032;238033;238034;238035;238036;238037	238032			5	
KQPPSDAALTMLSFIK	2	Unmodified	1745.9386	0.9385923	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.721	90.161	3	5.2155E-05	77917	160511_QHF_FH_JSI12i_3	76.391	68.982			0.74597	0.6726	19.113	4	3	Median	0.8887	0.71974	NaN	1	1	Median	0.56557	0.62855	NaN	1	1	Median	0.62616	0.58263	NaN	1	1	Median	0.91208	0.90074	NaN	1	0	Median	128050000	75712000	52340000	25568000	15608000	9959400	20831000	13301000	7530000	38395000	25235000	13160000	43259000	21568000	21691000	28252	3009	26744	176002;176003;176004;176005	238038;238039;238040;238041;238042	238041			5	
KQPPSFPGAAEER	1	Unmodified	1412.7048	0.70482762	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.321	23.982	3	0.019728	19430	160511_QHF_FH_JSI9i_3	31.389	26.498			1.1644	0.94314	NaN	1	0	Median	1.1644	0.94314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25601000	14135000	11466000	25601000	14135000	11466000	0	0	0	0	0	0	0	0	0	28253	2305	26745	176006	238043;238044	238044			2	
KQPPVSPGTALVGSQK	2	Unmodified	1592.8886	0.88860564	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.25		1	10					1	2	5	4	3	2	35.155	32.75	2;3	1.9276E-15	28493	160511_QHF_FH_JSI11i_3	164.68	148.01			0.97111	0.81098	20.02	12	1	Median	0.96254	0.77739	6.5286	5	0	Median	0.80651	0.93186	29.883	4	1	Median	1.1192	1.0492	0.82288	2	0	Median	0.79042	0.80547	NaN	1	0	Median	4001500000	2027700000	1973800000	1225100000	616100000	609030000	1476000000	821760000	654280000	1090900000	470920000	620000000	209450000	118900000	90542000	28254	1109	26746	176007;176008;176009;176010;176011;176012;176013;176014;176015;176016;176017;176018;176019;176020	238045;238046;238047;238048;238049;238050;238051;238052;238053;238054;238055;238056;238057;238058;238059;238060;238061;238062;238063;238064;238065;238066;238067;238068;238069;238070;238071;238072;238073;238074;238075;238076;238077;238078;238079	238051			35	
KQPSLPLSEDAHPSVAK	2	Unmodified	1802.9527	0.95266246	5386	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			38.734	37.259	3	0.046939	31015	160511_QHF_FH_JSI10i_3	26.837	21.628			0.22133	0.25722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22133	0.25722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45225000	37237000	7988400	0	0	0	45225000	37237000	7988400	0	0	0	0	0	0	28255	5386	26747	176021	238080	238080			1	
KQPSVLVTFPK	2	Unmodified	1242.7336	0.73360855	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			3							2			1	48.469	48.228	2;3	0.00040176	41258	160511_QHF_FH_JSI12i_3	74.611	64.823			0.96364	0.96457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96364	0.96457	NaN	1	1	Median	122020000	51664000	70357000	0	0	0	0	0	0	0	0	0	122020000	51664000	70357000	28256	489	26748	176022;176023;176024	238081;238082;238083	238083			3	
KQPTGLSK	2	Unmodified	857.49707	0.49706667	4434	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	6.1509	5.92	2	0.010326	3867	160511_QHF_FH_JSI9i_3	55.37	0.84479			1.0201	1.0892	34.854	4	0	Median	1.4854	1.1892	NaN	1	0	Median	0.93015	1.1143	NaN	1	0	Median	1.1188	1.0646	NaN	1	0	Median	0.55575	0.56189	NaN	1	0	Median	502880000	244240000	258640000	93116000	34363000	58753000	91326000	44866000	46460000	128390000	62183000	66208000	190040000	102830000	87216000	28257	4434	26749	176025;176026;176027;176028	238084;238085;238086;238087;238088	238087			5	
KQQAIELTQEEPYSDIIATPGPR	1	Unmodified	2583.318	0.31804626	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		71.434	70.66	3	1.897E-11	63042	160511_QHF_FH_JSI11i_3	107.21	99.5			0.96886	0.97364	20.107	4	0	Median	1.2346	1.0747	NaN	1	0	Median	0.77044	0.9096	31.166	2	0	Median	0.94317	0.88204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128460000	66214000	62248000	31759000	14466000	17293000	46681000	25552000	21130000	50021000	26196000	23825000	0	0	0	28258	396	26750	176029;176030;176031;176032	238089;238090;238091;238092;238093;238094;238095	238089			6	
KQQDVLGFLEANK	2	Unmodified	1488.7936	0.79364262	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.893	64.602	3	0.0019525	55818	160511_QHF_FH_JSI12i_3	58.32	17.093			0.33557	0.33805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33557	0.33805	NaN	1	1	Median	80772000	58993000	21779000	0	0	0	0	0	0	0	0	0	80772000	58993000	21779000	28259	511	26751	176033	238096	238096			1	
KQQQEILAAK	2	Unmodified	1155.6612	0.66117189	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	11.777	11.822	2;3	2.3027E-09	8987	160511_QHF_FH_JSI12i_3	129.85	78.785			1.1288	1.0797	3.6077	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.0619	1.1437	2	0	Median	1.1003	1.1165	3.5489	2	0	Median	920760000	413800000	506960000	0	0	0	0	0	0	259370000	112450000	146920000	661380000	301350000	360030000	28260	3905	26752	176034;176035;176036;176037	238097;238098;238099;238100	238099			4	
KQQSIAGSADSKPIDVSR	2	Unmodified	1885.9858	0.9857535	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			23.689	22.412	4	7.4591E-06	18058	160511_QHF_FH_JSI9i_3	70.942	65.399			1.0141	0.97268	26.312	2	0	Median	1.4513	1.1716	NaN	1	0	Median	0.70857	0.80755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115890000	47115000	68773000	83952000	29734000	54218000	31936000	17382000	14555000	0	0	0	0	0	0	28261	2323	26753	176038;176039	238101;238102;238103;238104	238104			4	
KQSDSVKGK	3	Acetyl (K)	1017.5455	0.54547343	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	5.5476	-2.0069	3	0.05618	1763	160513_QHF_FH_JSI12Kac_4	38.75	23.739			1.1412	1.2665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1412	1.2665	NaN	1	0	Median	11575000	5780100	5794400	0	0	0	0	0	0	0	0	0	11575000	5780100	5794400	28262	2130	26754	176040	238105	238105	2231;2232		1	
KQSDVMR	1	Unmodified	862.43309	0.43308621	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	3	1	1	3.6202	3.4205	2	0.010341	2236	160511_QHF_FH_JSI10i_2	98.997	59.778			0.60583	0.66375	44.118	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.64414	0.76158	39.99	2	2	Median	0.81	0.75152	NaN	1	0	Median	1.5628	1.608	NaN	1	1	Median	429400000	255020000	174380000	0	0	0	316950000	194120000	122830000	88818000	50409000	38409000	23639000	10495000	13144000	28263	1951	26755	176041;176042;176043;176044;176045;176046	238106;238107;238108;238109;238110;238111;238112	238111			7	
KQTALVELLK	2	Unmodified	1141.7071	0.70705945	50	CON__P02769			yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			9							1		4	4	50.416	50.299	2;3	8.3795E-05	41775	160511_QHF_FH_JSI9i_3	89.548	58.978		+	0.47617	0.46719	7.9584	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51813	0.48915	9.3347	2	2	Median	0.44914	0.45402	6.8813	2	2	Median	1106800000	706650000	400100000	0	0	0	0	0	0	453960000	264100000	189860000	652790000	442550000	210240000	28264	50	26756	176047;176048;176049;176050;176051;176052;176053;176054;176055	238113;238114;238115;238116;238117;238118;238119;238120;238121;238122	238117			10	
KQTDFEHR	1	Unmodified	1059.5098	0.50975662	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.12	5.12	2	0.013092	2830	160511_QHF_FH_JSI11i_3	58.596	25.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28265	2176	26757	176056	238123	238123			1	
KQTETEMLYGSAPR	1	Unmodified	1609.777	0.77700628	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	29.979	29.914	3	0.011049	25209	160511_QHF_FH_JSI12i_3	44.601	35.437			0.69365	0.74092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69365	0.74092	NaN	1	1	Median	20574000	13369000	7204800	0	0	0	0	0	0	0	0	0	20574000	13369000	7204800	28266	351	26758	176057	238124	238124			1	
KQTIDNSQGAYQEAFDISK	2	Unmodified	2142.0229	0.022926872	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.64	2	7	3							2	3	4	3	51.434	50.755	2;3	7.7505E-11	43332	160511_QHF_FH_JSI12i_3	127.5	108.96			0.99655	1.0091	8.4825	11	8	Median	1.1892	1.012	11.936	2	2	Median	0.83608	0.98094	7.0466	3	3	Median	1.0433	1.0269	12.499	4	3	Median	0.95332	1.0143	0.73612	2	0	Median	1193100000	608900000	584240000	174250000	70816000	103430000	321110000	178480000	142630000	433050000	215220000	217840000	264730000	144390000	120340000	28267	1288	26759	176058;176059;176060;176061;176062;176063;176064;176065;176066;176067;176068;176069	238125;238126;238127;238128;238129;238130;238131;238132;238133;238134;238135;238136;238137;238138;238139;238140;238141;238142	238140			18	
KQTSGMEYK	2	Unmodified	1070.5066	0.50664508	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			6.972	6.5207	2	0.014796	4523	160511_QHF_FH_JSI10i_2	53.166	27.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28268	1299	26760	176070	238143	238143			1	
KQTSPQLLK	2	Unmodified	1041.6182	0.61824444	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	14.994	14.356	2;3	0.0076351	11025	160511_QHF_FH_JSI12i_3	68.224	42.664			1.1807	0.99175	24.374	3	1	Plateau	1.1997	0.99175	NaN	1	0	Median	0.6598	0.77671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58816	0.60911	NaN	1	1	Median	67943000	37823000	30119000	28173000	13131000	15042000	16854000	10970000	5883900	0	0	0	22916000	13722000	9193300	28269	2884	26761	176071;176072;176073	238144;238145;238146	238145			3	
KQVAPEKPVK	3	Acetyl (K)	1164.6867	0.68665836	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	2		By MS/MS	By matching	By MS/MS	14.8	0.433							1	3			2	1	1	24.793	15.451	3	0.015963	9708	160513_QHF_FH_JSI12Kac_5	50.791	32.601			0.64204	1.0271	28.033	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.63391	0.75647	28.238	2	0	Median	0.53921	0.51621	NaN	1	0	Median	0.82721	0.88087	NaN	1	0	Median	13899000	8147400	5752100	0	0	0	7651100	4347200	3303900	2619300	1442400	1176900	3629100	2357800	1271300	28270	1815	26762	176074;176075;176076;176077	238147	238147	1835		1	
KQVEIAQR	1	Acetyl (K)	1012.5665	0.56654322	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.829					1	1	2				2	1	1	29.353	21.067	2	0.0053019	13306	160513_QHF_FH_JSI11Kac_4	109.48	41.985			0.24722	0.25179	109.53	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.7628	2.0472	19.292	2	0	Median	0.22824	0.22505	NaN	1	0	Median	0.4656	0.51463	NaN	1	0	Median	251770000	187050000	64715000	0	0	0	30500000	11930000	18569000	187280000	150750000	36532000	33990000	24376000	9613800	28271	779	26763	176078;176079;176080;176081	238148;238149;238150	238148	408		3	
KREEAAAVPAAAPDDLALLK	2	Unmodified	2048.1266	0.12660408	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	2	2		62.227	61.436	3;4	2.0389E-06	51617	160511_QHF_FH_JSI10i_3	85.974	76.559			0.90406	0.92453	13.287	5	0	Median	0.90406	0.77996	NaN	1	0	Median	0.75216	0.87236	8.2151	2	0	Median	1.0905	1.0383	4.2813	2	0	Median	NaN	NaN	NaN	0	0	Median	641340000	321500000	319840000	37206000	18744000	18462000	196030000	106990000	89043000	408100000	195760000	212340000	0	0	0	28272	3323	26764	176082;176083;176084;176085;176086	238151;238152;238153;238154;238155;238156;238157;238158;238159;238160	238159			10	
KREENTSNESTDVTKGDSK	3	Acetyl (K)	2166.0036	0.0036479926	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	3		By MS/MS			15	0								1			1			18.081	8.7811	4	0.046486	6661	160513_QHF_FH_JSI10Kac_5	38.888	29.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3033900	3033900	0	0	0	0	3033900	3033900	0	0	0	0	0	0	0	28273	2285	26765	176087	238161	238161	2384;2385		1	
KREENTSNESTDVTKGDSKNAK	4	2 Acetyl (K)	2521.1892	0.18921693	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	4	By MS/MS	By MS/MS		By MS/MS	15	0								5		1	3		1	24.238	15.047	4	1.2493E-05	9278	160513_QHF_FH_JSI10Kac_5	71.535	58.08			0.78676	0.65923	29.862	3	0	Median	0.78676	0.65923	NaN	1	0	Median	0.51245	0.60963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97042	1.0586	NaN	1	0	Median	37083000	17188000	19895000	4065300	2170500	1894800	13753000	5841200	7911600	0	0	0	19265000	9176400	10088000	28274	2285	26766	176088;176089;176090;176091;176092	238162;238163;238164;238165;238166;238167	238165	2384;2385;2386		6	
KREEPTAETK	2	Unmodified	1187.6146	0.61461563	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				4.6929	4.1935	3	0.00070797	2204	160511_QHF_FH_JSI9i_3	71.085	47.249			1.2804	1.0223	NaN	1	0	Median	1.2804	1.0223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158430000	61778000	96655000	158430000	61778000	96655000	0	0	0	0	0	0	0	0	0	28275	5340	26767	176093	238168	238168			1	
KRKAEEKDSLSR	3	2 Acetyl (K)	1529.8162	0.81616898	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	2	0	0	4		By MS/MS	By MS/MS		13	0						2					1	1		31.115	22.602	2	0.020909	13758	160513_QHF_FH_JSI11Kac_3	50.108	6.5954			0.89251	0.97104	10.982	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75186	0.89849	NaN	1	0	Median	1.0595	1.0495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52197000	27576000	24621000	0	0	0	27986000	16233000	11753000	24211000	11343000	12868000	0	0	0	28276	2220	26768	176094;176095	238169	238169	2334;2335;2336		1	
KSAPATGGVK	2	Unmodified	914.51853	0.5185304	2078;2753	P68431;Q71DI3;Q16695	HIST1H3A;HIST2H3A;HIST3H3	Histone H3.1;Histone H3.2;Histone H3.1t	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.065	4.844	2	0.00046833	2567	160511_QHF_FH_JSI12i_3	73.885	32.233			1.1138	0.96199	68.358	4	0	Median	1.4701	1.1647	NaN	1	0	Median	2.6433	3.0753	NaN	1	0	Median	0.84386	0.79456	NaN	1	0	Median	0.66381	0.66559	NaN	1	0	Median	4156700000	1644200000	2512500000	541220000	212580000	328640000	1321500000	283620000	1037900000	894750000	410880000	483870000	1399200000	737090000	662110000	28277	2078;2753	26769	176096;176097;176098;176099	238170;238171;238172	238172			3	
KSAPATGGVKK	3	Unmodified	1042.6135	0.61349341	2078;2753	P68431;Q71DI3;Q16695	HIST1H3A;HIST2H3A;HIST3H3	Histone H3.1;Histone H3.2;Histone H3.1t	no	no	0	0	0	2		By MS/MS			3	0			1								1			4.6523	4.1752	3	0.030315	2214	160511_QHF_FH_JSI10i_3	45.28	34.067			0.013841	0.01583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.013841	0.01583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	506140000	502250000	3887100	0	0	0	506140000	502250000	3887100	0	0	0	0	0	0	28278	2078;2753	26770	176100	238173	238173			1	
KSAPSTGGVKK	3	2 Acetyl (K)	1142.6295	0.62953741	2133	P84243	H3F3A	Histone H3.3	yes	yes	2	0	0	2	By MS/MS		By MS/MS	By MS/MS	13.2	0.433						3	1			1		1	2	23.313	13.254	2	4.215E-10	5411	160513_QHF_FH_JSI9Kac_3	134.13	61.93			0.98881	1.0024	11.235	4	0	Median	1.0113	0.83207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0891	1.0796	NaN	1	0	Median	0.93156	1.0024	2.8703	2	0	Median	154410000	76311000	78095000	67347000	32979000	34367000	0	0	0	39943000	20175000	19768000	47116000	23156000	23960000	28279	2133	26771	176101;176102;176103;176104	238174;238175;238176	238176	2235;2236		3	
KSDAGWYTLSAK	2	Unmodified	1325.6616	0.66156582	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	37.861	37.698	2	0.00018434	32034	160511_QHF_FH_JSI12i_3	103.88	79.649			0.84395	0.85596	17.979	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84395	0.85596	17.979	2	2	Median	119950000	52298000	67656000	0	0	0	0	0	0	0	0	0	119950000	52298000	67656000	28280	3306	26772	176105;176106	238177;238178	238177			2	
KSDFEFTLK	2	Unmodified	1113.5706	0.57062555	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	no	no	0	0	0	1				By MS/MS	3	0			1										1	47.826	47.586	2	0.051805	40724	160511_QHF_FH_JSI12i_3	48.602	24.082			0.53252	0.53576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53252	0.53576	NaN	1	1	Median	46188000	28324000	17864000	0	0	0	0	0	0	0	0	0	46188000	28324000	17864000	28281	662	26773	176107	238179	238179			1	
KSDFFINK	2	Unmodified	997.52328	0.52328142	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	29.633	29.579	2	0.0077121	24786	160511_QHF_FH_JSI9i_3	68.224	44.021			2.6389	2.5777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6389	2.5777	NaN	1	1	Median	43778000	13233000	30545000	0	0	0	0	0	0	0	0	0	43778000	13233000	30545000	28282	2884	26774	176108;176109	238180;238181	238180			2	
KSDGIYIINLK	2	Unmodified	1262.7234	0.72343779	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	57.342	57.172	2;3	7.1721E-05	49170	160511_QHF_FH_JSI12i_3	76.655	51.8			1.0472	1.0493	7.2512	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0975	1.033	NaN	1	0	Median	0.98088	0.98195	9.3812	2	1	Median	251670000	130050000	121630000	0	0	0	0	0	0	85016000	41731000	43284000	166660000	88314000	78342000	28283	917	26775	176110;176111;176112	238182;238183;238184	238183			3	
KSDIDEIVLVGGSTR	1	Unmodified	1587.8468	0.84680041	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.3		8	4				1	12		4	6	6	9	62.559	56.664	2;3	5.734E-05	48381	160511_QHF_FH_JSI12i_2	84.508	75.711			1.0241	1.0012	26.395	25	0	Median	1.1387	0.96747	15.899	4	0	Median	0.65274	0.78872	29.693	6	0	Median	1.1269	1.1265	13.699	6	0	Median	0.99876	1.0342	19.694	9	0	Median	6128500000	3000500000	3128000000	643370000	271390000	371980000	915940000	531850000	384090000	2004700000	866510000	1138100000	2564500000	1330800000	1233800000	28284	982	26776	176113;176114;176115;176116;176117;176118;176119;176120;176121;176122;176123;176124;176125;176126;176127;176128;176129;176130;176131;176132;176133;176134;176135;176136;176137	238185;238186;238187;238188;238189;238190;238191;238192;238193;238194;238195;238196;238197;238198;238199;238200;238201;238202;238203;238204;238205;238206;238207;238208;238209;238210;238211;238212;238213;238214;238215;238216;238217;238218;238219;238220;238221;238222;238223;238224;238225;238226;238227;238228;238229;238230;238231;238232;238233	238191			47	
KSDIDEIVLVGGSTRIPK	2	Unmodified	1926.0786	0.078591257	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			65.485	63.987	3	0.012512	53597	160511_QHF_FH_JSI10i_3	44.391	38.962			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28285	982	26777	176138	238234	238234			1	
KSDIPEK	2	Unmodified	815.43888	0.43888309	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1			By matching	By MS/MS	2.5	0.5		1	1									1	1	6.1502	6.1002	2	0.033091	3710	160511_QHF_FH_JSI12i_3	53.968	28.074			0.89722	0.89604	2.1762	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89239	0.88236	NaN	1	0	Median	0.90208	0.90994	NaN	1	0	Median	134880000	75697000	59180000	0	0	0	0	0	0	54561000	32457000	22104000	80317000	43240000	37076000	28286	1117	26778	176139;176140	238235	238235			1	
KSDIYVCMISFAHNVAAQGK	2	Unmodified	2238.0925	0.092543537	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	3	4	4	4	83.586	79.22	3;4	1.6267E-34	40198	160513_QHF_FH_JSI11Kac_6	164.59	156.5			0.86867	0.84559	26.138	15	8	Median	1.2913	1.1227	11.244	3	3	Plateau	0.65998	0.75852	18.749	4	3	Median	0.84259	0.79421	9.3802	4	1	Median	1.1441	1.1785	9.6639	4	1	Median	2500500000	1339700000	1160800000	577250000	254740000	322510000	742380000	476320000	266070000	595980000	335550000	260430000	584910000	273130000	311780000	28287	1702	26779	176141;176142;176143;176144;176145;176146;176147;176148;176149;176150;176151;176152;176153;176154;176155	238236;238237;238238;238239;238240;238241;238242;238243;238244;238245;238246;238247;238248;238249;238250;238251;238252;238253;238254	238241			19	
KSDIYVCMISFAHNVAAQGK	2	Oxidation (M)	2254.0875	0.087458159	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	1	1		By MS/MS		By MS/MS	16	0									4		1		3	64.454	55.094	3;4	1.1786E-05	28899	160513_QHF_FH_JSI12Kac_6	75.334	16.486			1.3124	1.3356	46.919	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.50298	0.5783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2409	1.3019	3.619	2	0	Median	52186000	30344000	21842000	0	0	0	15162000	11847000	3315500	0	0	0	37024000	18497000	18526000	28288	1702	26779	176156;176157;176158;176159	238255;238256;238257;238258;238259;238260	238257		1377	6	
KSDIYVCMISYAHNVAAQGK	2	Unmodified	2254.0875	0.087458159	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	76.829	68.922	3	1.4457E-10	35921	160513_QHF_FH_JSI12Kac_6	117.31	35.648			1.1822	1.3409	17.085	2	1	Median	NaN	NaN	NaN	0	0	Median	1	1.1883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3974	1.5131	NaN	1	0	Median	59763000	22926000	36837000	0	0	0	38230000	15772000	22458000	0	0	0	21533000	7154000	14379000	28289	1368	26780	176160;176161	238261;238262	238261			2	
KSDLHPTLPAGR	1	Unmodified	1290.7044	0.70443369	5026	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				22.02	20.75	3	0.049167	16683	160511_QHF_FH_JSI9i_3	26.124	16.171			1.1566	0.93834	NaN	1	1	Median	1.1566	0.93834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38536000	16898000	21639000	38536000	16898000	21639000	0	0	0	0	0	0	0	0	0	28290	5026	26781	176162	238263	238263			1	
KSDMEWTSSSK	2	Unmodified	1284.5656	0.56561652	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	15.638	15.67	3	0.0093484	12430	160511_QHF_FH_JSI12i_3	44.829	35.396			1.0173	0.9879	13.298	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1797	1.0853	NaN	1	1	Median	0.8772	0.89924	NaN	1	1	Median	101370000	63339000	38026000	0	0	0	0	0	0	35208000	20825000	14383000	66157000	42515000	23643000	28291	2540	26782	176163;176164	238264;238265	238265			2	
KSDPVVSYR	1	Unmodified	1049.5506	0.55055881	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							3	3	3	3	13.434	12.987	2;3	0.00022232	10317	160511_QHF_FH_JSI11i_3	61.56	47.968			0.85372	0.95384	31.398	12	0	Median	1.3159	1.1231	16.804	3	0	Median	0.97602	1.1415	10.98	3	0	Median	0.69543	0.65372	23.858	3	0	Median	0.58333	0.60848	8.1499	3	0	Median	6138200000	3353700000	2784400000	813840000	393980000	419860000	1119700000	683740000	435990000	2963200000	1545200000	1418000000	1241400000	730840000	510590000	28292	1033	26783	176165;176166;176167;176168;176169;176170;176171;176172;176173;176174;176175;176176	238266;238267;238268;238269;238270;238271;238272;238273;238274;238275;238276	238269			10	
KSDSNPLTEILK	2	Unmodified	1343.7296	0.72964538	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	61.11	60.808	2;3	3.2582E-05	53991	160511_QHF_FH_JSI11i_3	71.548	58.411			0.9429	0.94408	47.651	5	2	Median	2.2434	1.9618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70398	0.65349	24.407	2	1	Median	1.0393	1.0596	16.327	2	1	Median	371860000	207290000	164570000	18759000	5787000	12972000	0	0	0	132110000	73190000	58924000	220990000	128310000	92675000	28293	4119	26784	176177;176178;176179;176180;176181	238277;238278;238279;238280;238281;238282;238283	238277			7	
KSDVEAIFSK	2	Unmodified	1122.5921	0.59208927	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.47		7	5					4		3	4	4	5	41.502	38.338	2;3	2.7305E-07	32234	160511_QHF_FH_JSI12i_3	113.63	63.022			0.87118	0.90271	16.472	16	0	Median	1.2189	1.0447	8.6078	3	0	Median	0.77982	1.0988	17.601	4	0	Linear	0.86872	0.87443	11.007	4	0	Median	0.69745	0.78313	6.1136	5	0	Median	8047500000	4045000000	4002500000	692450000	299730000	392710000	1057500000	499830000	557700000	2427400000	1245600000	1181800000	3870200000	1999900000	1870300000	28294	882	26785	176182;176183;176184;176185;176186;176187;176188;176189;176190;176191;176192;176193;176194;176195;176196;176197	238284;238285;238286;238287;238288;238289;238290;238291;238292;238293;238294;238295;238296;238297;238298;238299;238300;238301;238302;238303;238304;238305;238306;238307;238308;238309;238310	238307			26	
KSDVEAIFSKYGK	3	Acetyl (K)	1512.7824	0.78240924	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	1	0	0	2			By MS/MS		16	0									1			1		71.479	62.059	2	0.0056838	33623	160513_QHF_FH_JSI11Kac_6	94.122	49.934			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12047000	12047000	0	0	0	0	0	0	0	12047000	12047000	0	0	0	0	28295	882	26786	176198	238311	238311	621		1	
KSDVETIFSK	2	Unmodified	1152.6027	0.60265396	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	36.067	35.994	2;3	0.00013009	30492	160511_QHF_FH_JSI12i_3	71.555	47.704			0.6637	0.66809	44.305	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6521	0.61604	76.307	2	1	Median	0.6637	0.66809	0.38246	2	0	Median	534880000	343110000	191770000	0	0	0	0	0	0	152490000	94309000	58183000	382390000	248800000	133580000	28296	5375	26787	176199;176200;176201;176202	238312;238313;238314;238315;238316;238317;238318;238319	238317			8	
KSDVNAIIHYLK	2	Unmodified	1399.7823	0.78234966	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		55.971	55.201	3;4	0.0022796	48157	160511_QHF_FH_JSI11i_3	55.452	50.068			1.1589	1.2214	78.227	2	1	Median	NaN	NaN	NaN	0	0	Median	0.59951	0.70247	NaN	1	0	Median	2.2401	2.1237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51409000	28792000	22616000	0	0	0	27157000	20883000	6273600	24252000	7908900	16343000	0	0	0	28297	942	26788	176203;176204	238320;238321	238320			2	
KSEAAVPPWVDTNDEETIQQQILALSADK	2	Unmodified	3195.5936	0.59355242	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	101.13	101.1	3	1.5385E-43	90128	160511_QHF_FH_JSI11i_3	178.44	172.53			0.93578	1.0185	18.341	4	0	Median	0.87178	0.73981	NaN	1	0	Median	0.91042	1.1193	NaN	1	0	Median	1.1372	1.0551	NaN	1	0	Median	0.96185	0.98319	NaN	1	0	Median	899490000	455510000	443970000	140200000	74857000	65347000	132620000	64775000	67847000	335990000	171710000	164290000	290670000	144180000	146490000	28298	3961	26789	176205;176206;176207;176208	238322;238323;238324;238325;238326	238322			5	
KSEALESIK	2	Unmodified	1003.555	0.55497548	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.403	14.476	2	0.0086682	11337	160511_QHF_FH_JSI12i_3	66.27	27.308			0.97314	0.96502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97314	0.96502	NaN	1	1	Median	45941000	25717000	20224000	0	0	0	0	0	0	0	0	0	45941000	25717000	20224000	28299	2627	26790	176209	238327	238327			1	
KSEAPAEVTHFSPK	2	Unmodified	1526.7729	0.77290718	3121	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	24.443	24.43	3	0.0003358	20181	160511_QHF_FH_JSI12i_3	76.156	55.148			0.88579	0.85696	6.5673	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97372	0.8977	NaN	1	1	Median	0.8058	0.81808	NaN	1	1	Median	132280000	80952000	51331000	0	0	0	0	0	0	69166000	45439000	23727000	63118000	35513000	27605000	28300	3121	26791	176210;176211	238328;238329	238329			2	
KSEASGFCYVNDIVLAILELLK	2	Unmodified	2481.3189	0.31889788	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	1		By MS/MS			16	0									1		1			104.51	98.788	3	3.7738E-11	58446	160513_QHF_FH_JSI10Kac_6	97.509	92.197			0.77074	0.90372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77074	0.90372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236920000	131940000	104980000	0	0	0	236920000	131940000	104980000	0	0	0	0	0	0	28301	2438;3882	26792	176212	238330;238331	238330			2	
KSEDGTPAEDGTPAATGGSQPPSMGR	1	Unmodified	2500.1136	0.11360915	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			28.454	28.135	3	0.00077483	24955	160511_QHF_FH_JSI10i_1	39.384	33.934			0.67802	0.76557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67802	0.76557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30680000	21413000	9267200	0	0	0	30680000	21413000	9267200	0	0	0	0	0	0	28302	4361	26793	176213	238332	238332			1	
KSEDTISK	2	Unmodified	906.46583	0.46582612	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2	0		4									1	1	2	5.0287	4.5928	2	0.022387	2493	160511_QHF_FH_JSI11i_2	44.349	19.455			0.609	0.67193	17.576	4	2	Median	NaN	NaN	NaN	0	0	Median	0.5037	0.60589	NaN	1	0	Median	0.86109	0.85485	NaN	1	0	Median	0.609	0.66363	16.387	2	2	Median	285690000	163890000	121800000	0	0	0	155700000	100430000	55269000	65979000	25510000	40469000	64011000	37949000	26062000	28303	2752	26794	176214;176215;176216;176217	238333;238334;238335	238335			3	
KSEEEIDFLR	1	Unmodified	1264.6299	0.62993134	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							1	2	3	3	44.522	43.705	2;3	1.1254E-05	38383	160511_QHF_FH_JSI10i_2	82.171	66.033			0.9252	1.0523	25.772	9	0	Median	1.4494	1.2402	NaN	1	0	Median	0.87842	1.0623	8.5431	2	0	Median	1.0398	1.0523	45.633	3	0	Median	0.85742	0.96274	8.7414	3	0	Median	1368700000	669740000	698990000	120780000	56746000	64039000	376420000	208070000	168350000	531450000	243790000	287660000	340080000	161140000	178940000	28304	5494	26795	176218;176219;176220;176221;176222;176223;176224;176225;176226	238336;238337;238338;238339;238340;238341;238342;238343;238344;238345;238346;238347;238348;238349;238350	238345			15	
KSEEVFQLQEQINK	2	Unmodified	1718.8839	0.88391419	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	49.031	48.6	3	3.0454E-05	41503	160511_QHF_FH_JSI12i_3	101.3	93.712			0.75953	0.77571	39.15	3	1	Median	1.4647	1.2884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6621	0.59646	NaN	1	1	Median	0.75953	0.77571	NaN	1	0	Median	164980000	85515000	79463000	27491000	13039000	14452000	0	0	0	40106000	24239000	15867000	97382000	48237000	49145000	28305	2574	26796	176227;176228;176229	238351;238352;238353	238352			3	
KSEIEYYAMLAK	2	Unmodified	1444.7272	0.72720254	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.42		7							3	3	1	3	3	61.39	57.911	2;3	5.3104E-11	50769	160511_QHF_FH_JSI9i_2	150.06	133.38			1.6957	1.4496	78.515	10	4	Median	1.7404	1.4804	101.03	3	2	Median	1.9887	2.481	NaN	1	0	Median	1.2774	1.2889	83.362	3	1	Median	1.2845	1.4194	98.039	3	1	Median	1800500000	631440000	1169100000	414710000	121350000	293360000	319870000	146840000	173020000	652660000	220060000	432600000	413270000	143180000	270090000	28306	2033	26797	176230;176231;176232;176233;176234;176235;176236;176237;176238;176239	238354;238355;238356;238357;238358;238359;238360;238361;238362;238363;238364;238365;238366;238367;238368	238360			14	
KSEIQTLK	2	Unmodified	945.5495	0.54949617	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	10.552	10.599	2;3	0.0053846	7894	160511_QHF_FH_JSI12i_3	66.073	17.512			1.0108	1.0239	23.268	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2379	1.1558	38.352	2	0	Median	1.0108	1.0239	2.5464	2	0	Median	544730000	243070000	301660000	0	0	0	0	0	0	207560000	88853000	118700000	337180000	154220000	182960000	28307	2525	26798	176240;176241;176242;176243	238369;238370;238371;238372;238373;238374;238375	238373			7	
KSELLPAGWNNNK	2	Unmodified	1469.7627	0.76267685	3836	Q92530	PSMF1	Proteasome inhibitor PI31 subunit	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		40.637	40.637	2;3	0.0056682	35769	160511_QHF_FH_JSI11i_3	62.891	57.575			0.86294	0.81142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86294	0.81142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109900000	57925000	51972000	0	0	0	0	0	0	109900000	57925000	51972000	0	0	0	28308	3836	26799	176244;176245	238376;238377	238377			1	
KSEQLHNVTAFQGK	2	Unmodified	1585.8213	0.82125436	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			22.783	21.551	3	0.0029903	17696	160511_QHF_FH_JSI10i_3	54.598	34.491			0.49484	0.57226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49484	0.57226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10873000	7335900	3536600	0	0	0	10873000	7335900	3536600	0	0	0	0	0	0	28309	4140	26800	176246	238378;238379	238378			2	
KSGPTVTK	2	Unmodified	816.47052	0.47051757	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			4.8362	4.348	3	0.0098925	2401	160511_QHF_FH_JSI9i_3	39.305	10.156			1.3269	1.274	8.5304	2	0	Median	1.4805	1.1994	NaN	1	0	Median	1.1892	1.3532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	339790000	130160000	209630000	181540000	61238000	120310000	158240000	68917000	89324000	0	0	0	0	0	0	28310	3216	26801	176247;176248	238380;238381	238381			2	
KSLSPEQDIK	2	Acetyl (K)	1185.6241	0.62411768	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	13	0						3				1		1	1	36.087	24.136	2	1.3469E-07	6642	160513_QHF_FH_JSI9Kac_3	141.08	75.838			1.1735	0.99312	234.66	3	1	Plateau	1.1735	0.99312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3853	1.3674	NaN	1	0	Median	61.573	67.217	NaN	1	1	Median	505920000	211970000	293950000	357420000	162580000	194830000	0	0	0	93887000	48947000	44940000	54619000	443630	54175000	28311	5552	26802	176249;176250;176251	238382;238383;238384;238385;238386	238384	3487		5	
KSPATPQAK	2	Unmodified	926.51853	0.5185304	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.162	13.939	3	0.064475	11009	160511_QHF_FH_JSI11i_2	10.758	1.4001			0.58623	0.59419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58623	0.59419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	327620000	186180000	141440000	0	0	0	0	0	0	327620000	186180000	141440000	0	0	0	28312	4311	26803	176252	238387	238387			1	
KSPLIESTANMDNNQSQK	2	Unmodified	2003.9582	0.95821812	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		28.344	27.522	3	1.365E-07	23883	160511_QHF_FH_JSI9i_2	118.48	108.56			0.99889	1.0783	11.487	4	1	Median	1.0706	0.92479	NaN	1	0	Median	0.92046	1.0783	1.9531	2	1	Median	1.3133	1.2228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	211070000	111120000	99956000	35765000	18430000	17335000	73565000	40712000	32853000	101740000	51974000	49768000	0	0	0	28313	227	26804	176253;176254;176255;176256	238388;238389;238390;238391;238392;238393;238394	238393			7	
KSPLIESTANMDNNQSQK	2	Oxidation (M)	2019.9531	0.95313275	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			18.581	17.475	3	0.0039103	14182	160511_QHF_FH_JSI10i_3	47.754	37.697			0.58139	0.68956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58139	0.68956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8562400	5744400	2818000	0	0	0	8562400	5744400	2818000	0	0	0	0	0	0	28314	227	26804	176257	238395	238395		96	1	
KSPLSWIEEK	2	Unmodified	1215.6499	0.6499385	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		58.416	57.393	2	0.00039085	47212	160511_QHF_FH_JSI9i_3	76.228	64.181			1.0362	0.97526	9.0492	3	0	Median	1.0524	0.85408	NaN	1	0	Median	0.87609	1.0153	NaN	1	0	Median	1.0362	0.97526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	371830000	188840000	182990000	110790000	53503000	57289000	117740000	63639000	54104000	143300000	71695000	71600000	0	0	0	28315	1791	26805	176258;176259;176260	238396;238397;238398	238398			3	
KSPPHLIK	2	Unmodified	918.56509	0.56508666	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	10.526	10.333	2;3	0.0044903	8361	160511_QHF_FH_JSI9i_3	47.603	12.795			0.9956	0.89495	82.639	6	1	Median	1.1032	0.88069	NaN	1	0	Median	4.0633	4.7413	NaN	1	0	Median	0.68647	0.65587	77.313	2	0	Median	0.85771	0.87392	5.6351	2	1	Median	3150200000	1498700000	1651500000	430600000	148130000	282470000	313710000	74223000	239480000	833820000	396390000	437430000	1572100000	879990000	692110000	28316	2294	26806	176261;176262;176263;176264;176265;176266	238399;238400;238401;238402;238403;238404;238405;238406;238407	238404			9	
KSPSDTEGLVK	2	Unmodified	1159.6085	0.60846762	673	O95297	MPZL1	Myelin protein zero-like protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.247	15.309	2	0.0007704	11945	160511_QHF_FH_JSI12i_3	68.657	43.098			0.97181	0.97451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97181	0.97451	NaN	1	0	Median	105700000	49933000	55763000	0	0	0	0	0	0	0	0	0	105700000	49933000	55763000	28317	673	26807	176267	238408;238409	238408			2	
KSQIFSTASDNQPTVTIK	2	Unmodified	1964.0215	0.021470309	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			48.638	47.049	3	2.6126E-08	38564	160511_QHF_FH_JSI9i_3	126.14	118.7			0.47589	0.46863	32.47	2	0	Median	0.45117	0.37249	NaN	1	0	Median	0.50197	0.58958	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113710000	77126000	36584000	69911000	47207000	22704000	43799000	29919000	13880000	0	0	0	0	0	0	28318	982	26808	176268;176269	238410;238411;238412	238412			3	
KSTGGKAPR	2	Acetyl (K)	942.52468	0.52467841	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	1	2	2	4.805	-3.5549	3	0.0027509	1358	160513_QHF_FH_JSI12Kac_5	88.681	68.894			0.015073	0.014626	277.74	4	3	Median	NaN	NaN	NaN	0	0	Median	1.6376	1.93	NaN	1	0	Median	0.015073	0.014626	133.48	2	2	Median	0.0045516	0.0050036	NaN	1	1	Median	673300000	414010000	259280000	108910000	108910000	0	370480000	111510000	258970000	59774000	59559000	214520	134130000	134030000	95205	28319	2078;2753;2133	26809	176270;176271;176272;176273;176274;176275;176276	238413;238414;238415;238416;238417;238418;238419	238416	2166;2167		7	
KSTGGKAPR	2	2 Acetyl (K)	984.53524	0.53524309	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13.7	0.943					1	3	3	2			2	4	3	11.115	3.0079	2	0.0044158	4575	160513_QHF_FH_JSI11Kac_3	93.111	55.919			0.88998	0.87911	40.422	9	0	Median	NaN	NaN	NaN	0	0	Median	1.8358	2.0705	3.3951	2	0	Median	0.91797	0.90607	5.5448	4	0	Median	0.70393	0.73989	7.0958	3	0	Plateau	1345900000	632360000	713550000	0	0	0	569650000	204240000	365410000	366830000	188720000	178110000	409430000	239400000	170040000	28320	2078;2753;2133	26809	176277;176278;176279;176280;176281;176282;176283;176284;176285	238420;238421;238422;238423;238424;238425;238426	238421	2166;2167		7	
KSTGGKAPRK	3	2 Acetyl (K)	1112.6302	0.63020611	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	2	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.7							1	3	3	1	3	1	2	7.8689	-0.57484	3	0.0074367	2784	160513_QHF_FH_JSI11Kac_5	59.426	32.753			1.5499	1.2817	82.928	7	0	Median	1.5499	1.2817	NaN	1	0	Median	4.288	5.1243	5.4307	3	0	Median	1.3417	1.2801	NaN	1	0	Median	0.84323	0.92678	6.0357	2	0	Median	88129000	24869000	63260000	5505900	2165100	3340800	57055000	10489000	46566000	6799500	2018600	4780900	18768000	10196000	8571800	28321	2078;2753;2133	26810	176286;176287;176288;176289;176290;176291;176292	238427;238428;238429	238427	2164;2166;2167		3	
KSYEPLEDPGVK	2	Acetyl (K)	1402.698	0.6980109	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.4					1	4					2	2	1	55.157	45.765	2;3	9.3832E-10	24789	160513_QHF_FH_JSI11Kac_3	155.97	123.65			0.56196	0.5996	228.24	4	3	Median	NaN	NaN	NaN	0	0	Median	1.4068	1.6638	NaN	1	0	Median	0.081417	0.079152	142.03	2	2	Median	4.6968	5.0827	NaN	1	1	Median	28898000	22409000	6489400	0	0	0	8256500	3917700	4338800	18844000	18207000	637570	1797800	284780	1513000	28322	1471	26811	176293;176294;176295;176296;176297	238430;238431;238432;238433;238434	238431	1459		4	
KTDAPQPDVK	2	Unmodified	1097.5717	0.57168818	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	9.8294	9.4578	2	0.00017516	7490	160511_QHF_FH_JSI12i_1	82.749	58.595			0.87009	1.0169	17.777	7	0	Median	1.4586	1.2529	NaN	1	0	Median	0.84198	1.0047	1.7134	2	0	Median	1.1633	1.1457	15.309	2	0	Median	0.78174	0.83257	11.697	2	0	Median	256010000	129320000	126680000	20116000	7883800	12232000	67061000	38111000	28950000	101940000	46974000	54968000	66886000	36354000	30532000	28323	1299	26812	176298;176299;176300;176301;176302;176303;176304	238435;238436;238437;238438;238439;238440;238441;238442;238443	238439			9	
KTDAPQPDVKEEEEEK	3	Unmodified	1870.8796	0.87961668	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	2	1	2	15.877	15.449	3	0.00026762	12165	160511_QHF_FH_JSI12i_3	82.259	46.62			0.77599	0.79754	51.14	6	3	Median	1.712	1.4658	NaN	1	0	Median	0.85024	1.0341	67.471	2	1	Median	1.0592	0.99112	NaN	1	0	Median	0.50863	0.53549	18.063	2	2	Median	315680000	159700000	155980000	66082000	22852000	43230000	123690000	65795000	57892000	77114000	35647000	41467000	48798000	35404000	13394000	28324	1299	26813	176305;176306;176307;176308;176309;176310	238444;238445;238446;238447;238448;238449;238450;238451;238452	238452			9	
KTDFFIGGEEGMAEK	2	Unmodified	1657.7658	0.76577289	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	52.897	52.662	2	0.004186	45203	160511_QHF_FH_JSI12i_3	70.412	55.993			1.0266	1.0549	14.377	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0266	1.0549	14.377	2	2	Median	30522000	15921000	14601000	0	0	0	0	0	0	0	0	0	30522000	15921000	14601000	28325	5497	26814	176311;176312	238453;238454	238454			2	
KTDFVNSR	1	Unmodified	965.49304	0.49304393	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		9.4636	9.142	2	0.015036	6817	160511_QHF_FH_JSI11i_3	51.066	19.777			0.79435	0.69149	66.599	2	0	Median	1.3647	1.1074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46235	0.43178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76922000	46601000	30322000	26215000	11492000	14723000	0	0	0	50708000	35109000	15599000	0	0	0	28326	4330	26815	176313;176314	238455	238455			1	
KTDIAAFVK	2	Unmodified	991.57023	0.57023162	1587	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	36.509	36.436	3	0.0026448	31752	160511_QHF_FH_JSI11i_3	43.282	27.079			0.92592	0.89492	14.747	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.873	0.8063	NaN	1	0	Median	0.98205	0.99328	NaN	1	0	Median	146070000	79067000	67003000	0	0	0	0	0	0	43966000	20368000	23598000	102100000	58699000	43405000	28327	1587	26816	176315;176316	238456;238457;238458	238456			3	
KTDPSSLGATSASFNFGK	2	Unmodified	1813.8846	0.88464248	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	2	2	54.677	54.016	2;3	7.5693E-12	47905	160511_QHF_FH_JSI11i_3	127.88	122.3			1.0141	0.99088	8.3176	7	0	Median	1.1661	0.97006	13.03	2	0	Median	0.96242	1.094	NaN	1	0	Median	1.0292	0.97677	4.1645	2	0	Median	0.92887	0.93655	7.9742	2	0	Median	1601300000	868750000	732580000	135090000	73566000	61529000	166140000	90615000	75526000	517610000	277630000	239980000	782480000	426950000	355540000	28328	5382	26817	176317;176318;176319;176320;176321;176322;176323	238459;238460;238461;238462;238463;238464;238465;238466;238467;238468;238469;238470	238461			12	
KTDQLVSFLR	1	Unmodified	1205.6768	0.67682195	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			54.943	53.38	2	0.049272	44617	160511_QHF_FH_JSI10i_3	35.944	24.792			0.81734	0.78919	24.79	2	0	Median	1.1371	0.9404	NaN	1	0	Median	0.58749	0.6623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42749000	25460000	17289000	19688000	10922000	8766000	23061000	14538000	8522900	0	0	0	0	0	0	28329	5460	26818	176324;176325	238471	238471			1	
KTDVKEEDK	3	Unmodified	1090.5506	0.55061839	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	2	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							2		1	1	2.6816	2.5055	2;3	0.013759	759	160511_QHF_FH_JSI11i_3	51.445	28.804			0.908	0.88351	93.658	4	3	Median	0.52134	0.4504	80.472	2	2	Median	NaN	NaN	NaN	0	0	Median	2.6682	2.4925	NaN	1	1	Median	0.91361	0.98109	NaN	1	0	Median	297530000	148440000	149090000	153090000	92741000	60352000	0	0	0	96695000	28804000	67892000	47742000	26892000	20850000	28330	3882	26819	176326;176327;176328;176329	238472;238473;238474;238475	238472			4	
KTEAPAAPAAQETK	2	Unmodified	1411.7307	0.73070802	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.48	8	8	8			4	3	3		8	8	10	8	12.835	9.8201	2;3	3.227E-21	8272	160511_QHF_FH_JSI11i_1	170.79	154.12			1.0023	1.0447	13.858	34	4	Median	1.3041	1.0763	12.745	8	0	Median	0.86354	1.0354	16.824	8	1	Median	0.98688	0.99741	16.1	10	3	Median	1.002	1.0466	9.2232	8	0	Median	31542000000	16001000000	15541000000	4917900000	2041300000	2876700000	7559900000	4248700000	3311100000	11564000000	5861400000	5702800000	7500000000	3849200000	3650800000	28331	2101	26820	176330;176331;176332;176333;176334;176335;176336;176337;176338;176339;176340;176341;176342;176343;176344;176345;176346;176347;176348;176349;176350;176351;176352;176353;176354;176355;176356;176357;176358;176359;176360;176361;176362;176363	238476;238477;238478;238479;238480;238481;238482;238483;238484;238485;238486;238487;238488;238489;238490;238491;238492;238493;238494;238495;238496;238497;238498;238499;238500;238501;238502;238503;238504;238505;238506;238507;238508;238509;238510;238511;238512;238513;238514;238515;238516;238517;238518;238519;238520;238521;238522;238523;238524;238525;238526;238527;238528;238529;238530;238531;238532;238533;238534;238535;238536	238480			60	
KTEDTYFISSAGKPTPGTQGK	3	Unmodified	2212.1012	0.10117719	2822	Q3V6T2	CCDC88A	Girdin	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		34.815	34.815	3	0.021985	30369	160511_QHF_FH_JSI11i_3	37.672	14.797			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28332	2822	26821	176364	238537	238537			1	
KTEEYDTQAMK	2	Unmodified	1342.6075	0.60748134	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	3	1	1	12.489	12.135	2;3	0.00036962	9431	160511_QHF_FH_JSI12i_2	86.624	58.226			0.80341	1.3202	48.722	3	3	Plateau	1.5026	1.3202	NaN	1	1	Median	0.48252	0.57167	NaN	1	1	Median	1.3377	1.3383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	130230000	68454000	61779000	17064000	5552400	11512000	53078000	35852000	17226000	60091000	27050000	33042000	0	0	0	28333	4153	26822	176365;176366;176367;176368;176369;176370	238538;238539;238540;238541;238542;238543	238538			6	
KTEGTPNQGK	2	Unmodified	1058.5356	0.53563702	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		0.59506	0.59506	3	0.0019112	373	160511_QHF_FH_JSI11i_3	59.426	31.945			0.73532	0.68653	118.66	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73532	0.68653	118.66	2	2	Median	NaN	NaN	NaN	0	0	Median	78432000	41085000	37348000	0	0	0	0	0	0	78432000	41085000	37348000	0	0	0	28334	5213	26823	176371;176372	238544;238545	238545			2	
KTEGYTIIGVEQTAK	2	Unmodified	1636.8672	0.8672015	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	42.415	42.304	3	5.4046E-05	36109	160511_QHF_FH_JSI12i_3	85.493	76.672			0.71287	0.69464	41.767	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54501	0.51701	NaN	1	1	Median	0.93244	0.93331	NaN	1	0	Median	86795000	48550000	38245000	0	0	0	0	0	0	24739000	17117000	7622100	62056000	31433000	30623000	28335	2397	26824	176373;176374	238546;238547;238548;238549	238548			4	
KTEINVEGVAK	2	Unmodified	1186.6558	0.65575216	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.589	24.563	2	0.0010258	20369	160511_QHF_FH_JSI12i_3	76.228	48.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28336	2862	26825	176375	238550	238550			1	
KTEITDK	2	Unmodified	833.44945	0.44944778	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	5.1143	4.9009	2;3	0.010089	2528	160511_QHF_FH_JSI12i_3	77.058	8.1428			0.94157	0.90666	18.959	5	0	Median	1.152	0.94544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76905	0.76348	24.306	2	0	Median	0.87072	0.92671	19.034	2	0	Median	2123000000	1106500000	1016500000	405730000	170740000	234990000	0	0	0	714860000	389330000	325520000	1002400000	546410000	455970000	28337	5496	26826	176376;176377;176378;176379;176380	238551;238552;238553;238554	238554			4	
KTELGAK	2	Unmodified	745.4334	0.43340378	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	4.8266	4.581	2	0.010899	2290	160511_QHF_FH_JSI11i_3	73.616	38.724			0.94109	0.95328	22.905	6	0	Median	1.216	1.0552	NaN	1	0	Median	0.74898	0.92397	NaN	1	0	Median	0.94109	0.91465	10.266	2	0	Median	0.86442	0.9206	48.554	2	0	Median	3178600000	1828900000	1349700000	271110000	124780000	146330000	280130000	126900000	153220000	1189700000	647250000	542410000	1437700000	930010000	507700000	28338	2502	26827	176381;176382;176383;176384;176385;176386	238555;238556	238555			2	
KTERDELLK	2	Unmodified	1130.6295	0.62953741	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			11.116	10.482	3	0.015553	8138	160511_QHF_FH_JSI10i_3	48.091	29.346			0.90867	1.0505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90867	1.0505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180440000	91346000	89097000	0	0	0	180440000	91346000	89097000	0	0	0	0	0	0	28339	3766	26828	176387	238557;238558	238558			2	
KTESASVQGR	1	Unmodified	1061.5465	0.54653606	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.6215	4.6215	3	0.036533	2334	160511_QHF_FH_JSI11i_3	29.281	21.635			1.4396	1.3701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4396	1.3701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	415830000	166210000	249630000	0	0	0	0	0	0	415830000	166210000	249630000	0	0	0	28340	5213	26829	176388	238559	238559			0	
KTESAVSQMQSVIELGR	1	Unmodified	1861.9568	0.95676156	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.75	6.4		1	4						3	4	2	2		68.733	64.88	2;3	1.1486E-06	53539	160511_QHF_FH_JSI9i_3	105.5	95.751			1.2498	1.121	14.6	8	2	Median	1.3398	1.121	6.3081	4	2	Median	0.95257	1.1379	15.512	2	0	Median	1.0286	0.96968	27.595	2	0	Median	NaN	NaN	NaN	0	0	Median	370570000	169890000	200680000	220420000	90348000	130070000	75434000	42393000	33041000	74717000	37148000	37569000	0	0	0	28341	1520	26830	176389;176390;176391;176392;176393;176394;176395;176396	238560;238561;238562;238563;238564;238565;238566;238567;238568	238566			9	
KTESAVSQMQSVIELGR	1	Oxidation (M)	1877.9517	0.95167618	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	1		By MS/MS	By MS/MS		15	0								2			1	1		49.41	39.12	3	0.0064725	20132	160513_QHF_FH_JSI10Kac_5	56.215	44.694			0.77479	0.87276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77479	0.87276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1222900	988640	234270	0	0	0	1222900	988640	234270	0	0	0	0	0	0	28342	1520	26830	176397;176398	238569;238570	238570		1196	2	
KTESFQNAQAGSNPK	2	Unmodified	1605.7747	0.7746981	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	10.687	10.466	2;3	2.5095E-05	8154	160511_QHF_FH_JSI11i_3	103.39	82.961			1.1288	1.1496	42.903	4	0	Median	2.4187	2.0772	NaN	1	0	Median	1.1734	1.2903	NaN	1	0	Median	1.0859	1.0241	NaN	1	0	Median	0.79002	0.75013	NaN	1	0	Median	181750000	86938000	94813000	37365000	12018000	25347000	29732000	14117000	15615000	83396000	42566000	40829000	31258000	18237000	13021000	28343	3869	26831	176399;176400;176401;176402;176403	238571;238572;238573;238574;238575	238572			3	
KTETAAHSLPQQTK	2	Unmodified	1538.8053	0.80526994	2849	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		8.5542	8.2789	3	5.8571E-05	6006	160511_QHF_FH_JSI11i_3	71.692	57.434			0.79004	0.81214	20.259	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81974	0.93723	NaN	1	0	Median	0.76141	0.70375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135620000	74111000	61507000	0	0	0	47673000	29221000	18452000	87945000	44890000	43056000	0	0	0	28344	2849	26832	176404;176405	238576;238577;238578;238579	238576			4	
KTETMNVVMETNK	2	Unmodified	1523.7324	0.73236428	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	28.528	28.085	2;3	0.00010773	23422	160511_QHF_FH_JSI12i_3	106.49	85.622			0.84003	0.84333	12.459	7	0	Median	0.95406	0.80725	17.555	2	0	Median	0.80323	0.99856	NaN	1	0	Median	0.85621	0.8118	5.3892	2	0	Median	0.79191	0.80335	14.364	2	0	Median	957450000	446340000	511110000	122250000	56765000	65489000	109750000	60511000	49235000	219460000	104990000	114470000	505990000	224080000	281910000	28345	1016	26833	176406;176407;176408;176409;176410;176411;176412;176413	238580;238581;238582;238583;238584;238585;238586;238587;238588	238588			9	
KTETMNVVMETNK	2	Oxidation (M)	1539.7273	0.7272789	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	23.475	23.488	3	0.0091404	24027	160511_QHF_FH_JSI11i_3	41.621	25.193			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28346	1016	26833	176414;176415	238589;238590	238589		604;605	2	
KTETQEKNTLPTK	3	Acetyl (K)	1558.8203	0.82025131	2064	P63313;CON__P21752	TMSB10	Thymosin beta-10	yes	no	1	0	0	2			By MS/MS	By MS/MS	14	0							2					1	1	24.707	17.017	3	0.0011074	11027	160513_QHF_FH_JSI11Kac_4	87.083	67.329		+	0.1715	0.17701	169.6	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.054418	0.053355	NaN	1	1	Median	0.54049	0.58724	NaN	1	0	Median	21421000	16131000	5289600	0	0	0	0	0	0	7680900	7432800	248080	13740000	8698500	5041600	28347	2064	26834	176416;176417	238591;238592	238591	2136;2137		2	
KTETQTTGAENK	2	Unmodified	1306.6365	0.63647328	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		4.5941	4.4	2	4.5377E-05	2132	160511_QHF_FH_JSI11i_2	100.88	73.624			0.93806	0.99943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93806	0.99943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38602000	21865000	16737000	0	0	0	0	0	0	38602000	21865000	16737000	0	0	0	28348	4505	26835	176418	238593;238594	238594			2	
KTEVKPEK	3	Unmodified	957.5495	0.54949617	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		4.5408	4.5408	3	0.015363	2188	160511_QHF_FH_JSI11i_3	53.327	23.854			1.5176	1.3946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5176	1.3946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	737940000	298740000	439200000	0	0	0	0	0	0	737940000	298740000	439200000	0	0	0	28349	1501	26836	176419	238595;238596	238596			2	
KTEVLMENFR	1	Unmodified	1265.6438	0.64380726	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	38.877	38.349	2;3	4.2601E-05	33466	160511_QHF_FH_JSI11i_3	69.346	63.882			0.95316	0.93312	37.468	5	2	Median	NaN	NaN	NaN	0	0	Median	0.56371	0.66628	34.565	2	1	Median	1.3563	1.2905	7.0956	2	0	Median	0.95316	0.93312	NaN	1	1	Median	681110000	338610000	342490000	0	0	0	75894000	43925000	31969000	477850000	230280000	247560000	127370000	64409000	62958000	28350	5496	26837	176420;176421;176422;176423;176424	238597;238598;238599;238600;238601;238602;238603;238604	238601			8	
KTEVVIYHGMSALQK	2	Unmodified	1702.9076	0.90762652	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			51.244	42.322	3;4	0.0011773	23309	160513_QHF_FH_JSI10Kac_6	57.148	46.663			0.60896	0.78638	21.346	4	0	Linear	1.5227	1.2665	12.637	2	0	Median	0.77857	0.90655	9.4596	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34836000	15200000	19636000	13736000	4741300	8995100	21100000	10459000	10641000	0	0	0	0	0	0	28351	3359	26838	176425;176426;176427;176428	238605;238606;238607;238608	238608			3	
KTEVVMNSQQTPVGTPK	2	Unmodified	1842.9509	0.9509479	563	O75781	PALM	Paralemmin-1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	30.64	30.218	2;3	2.9208E-11	25430	160511_QHF_FH_JSI12i_3	143.88	134.46			0.75078	0.89993	21.071	5	1	Median	1.0556	0.93529	NaN	1	0	Median	0.73547	0.89993	NaN	1	0	Median	1.2661	1.1755	NaN	1	0	Median	0.69123	0.73345	15.234	2	1	Median	312640000	171790000	140850000	36644000	19696000	16948000	31972000	17291000	14681000	98985000	51554000	47431000	145040000	83249000	61786000	28352	563	26839	176429;176430;176431;176432;176433	238609;238610;238611	238610			3	
KTFSYAGFEMQPK	2	Acetyl (K)	1574.7439	0.74391524	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.86	66.225	2	0.011598	35231	160513_QHF_FH_JSI11Kac_5	64.55	45.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2909500	2909500	0	0	0	0	0	0	0	2909500	2909500	0	0	0	0	28353	4321	26840	176434	238612	238612	3129		1	
KTGCNVLLIQK	2	Unmodified	1272.7224	0.72239194	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							2	2	4	2	32.673	32.091	2;3	7.6703E-05	27096	160511_QHF_FH_JSI10i_3	75.695	17.019			0.98862	0.93705	33.461	10	3	Median	1.1488	0.93705	0.60973	2	0	Median	0.52985	0.60682	35.521	2	1	Median	1.0579	1.0041	41.058	4	2	Median	0.98862	1.0106	6.511	2	0	Median	1180000000	643260000	536740000	195180000	82311000	112860000	223980000	130960000	93013000	314690000	177570000	137110000	446160000	252410000	193750000	28354	1722	26841	176435;176436;176437;176438;176439;176440;176441;176442;176443;176444	238613;238614;238615;238616;238617;238618;238619;238620;238621;238622;238623;238624;238625;238626;238627;238628	238618			16	
KTGKTVSYLGLE	2	Acetyl (K)	1336.7238	0.72383172	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	1	0	0	2		By MS/MS			15	0								1			1			66.124	55.441	2	0.0012411	28024	160513_QHF_FH_JSI10Kac_5	88.681	70.369			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28355	112	26842	176445	238629	238629	72		1	
KTGNFQVTELGR	1	Unmodified	1348.7099	0.709913	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.768	33.325	3	0.011627	27201	160511_QHF_FH_JSI9i_3	43.337	32.432			1.0868	0.89591	NaN	1	1	Median	1.0868	0.89591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68014000	32248000	35766000	68014000	32248000	35766000	0	0	0	0	0	0	0	0	0	28356	552	26843	176446	238630	238630			1	
KTGQAPGYSYTAANK	2	Unmodified	1555.7631	0.76307078	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		16.184	15.358	2;3	2.7384E-05	12507	160511_QHF_FH_JSI11i_3	87.519	68.691			0.86658	1.0085	91.898	5	3	Median	3.6891	3.0253	12.174	2	1	Median	0.62964	0.72718	46.255	2	2	Median	0.49512	0.45503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	290990000	106990000	183990000	166800000	29337000	137460000	92329000	56928000	35401000	31861000	20728000	11133000	0	0	0	28357	2143	26844	176447;176448;176449;176450;176451	238631;238632;238633;238634;238635;238636;238637	238632			7	
KTGQPMINLYTDR	1	Unmodified	1535.7766	0.77661235	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			43.544	41.985	3	0.0004408	34982	160511_QHF_FH_JSI10i_3	60.196	50.914			0.74881	0.74324	6.7712	2	0	Median	0.93289	0.77969	NaN	1	0	Median	0.60106	0.70849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45173000	27252000	17921000	18985000	9841300	9143700	26188000	17411000	8777500	0	0	0	0	0	0	28358	1442	26845	176452;176453	238638;238639	238638			2	
KTGSPGSPGAGGVQSTAK	2	Unmodified	1585.806	0.80599822	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	2	2		9.4952	9.0968	2;3	2.6265E-07	6747	160511_QHF_FH_JSI9i_3	105.5	92.67			1.1143	0.99994	24.553	6	1	Median	1.3574	1.1359	17.463	3	0	Median	0.7418	0.8573	NaN	1	0	Median	0.89313	0.83984	35.745	2	1	Median	NaN	NaN	NaN	0	0	Median	269450000	143370000	126080000	119170000	55346000	63823000	75380000	38784000	36596000	74901000	49240000	25661000	0	0	0	28359	312	26846	176454;176455;176456;176457;176458;176459;176460	238640;238641;238642;238643;238644;238645;238646;238647	238644			8	
KTLDSHASRMAQLKK	3	Acetyl (K)	1754.9461	0.9461373	2339	Q13009	TIAM1	T-lymphoma invasion and metastasis-inducing protein 1	yes	yes	1	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	86	77.908	2;3	0.0045635	42637	160513_QHF_FH_JSI9Kac_6	66.246	42.765			0.81488	0.88399	14.832	7	0	Median	0.81734	0.6986	6.0182	2	0	Median	0.75556	0.89885	2.3572	2	0	Median	1.0339	0.98548	2.7944	2	0	Median	0.81488	0.86207	NaN	1	0	Median	2201100000	1144300000	1056800000	496170000	266750000	229420000	880250000	497410000	382840000	743880000	344090000	399790000	80791000	36006000	44784000	28360	2339	26847	176461;176462;176463;176464;176465;176466;176467	238648;238649;238650;238651;238652	238649	2427		4	
KTNKNKSSISR	3	3 Acetyl (K)	1387.7419	0.74194141	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	0.994					1	2	3	3		1	2	2	4	24.611	15.183	2	1.839E-19	10994	160513_QHF_FH_JSI12Kac_4	158.04	111.58			0.92258	0.99332	6.4934	9	0	Median	1.2695	1.0304	NaN	1	0	Median	0.80749	0.97401	7.0901	2	0	Median	0.99153	0.97115	10.536	2	0	Median	0.89632	0.96243	6.6544	4	0	Median	418860000	218470000	200390000	138890000	64323000	74566000	39867000	20767000	19100000	54550000	30862000	23689000	185550000	102520000	83032000	28361	3886	26848	176468;176469;176470;176471;176472;176473;176474;176475;176476	238653;238654;238655;238656;238657;238658	238657	2979;2980;2981		6	
KTPCGEGSK	2	Unmodified	962.44913	0.4491302	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	1		By MS/MS			3	0			3								3			1.2454	0.80637	2;3	0.002411	523	160511_QHF_FH_JSI10i_3	58.592	49.729			0.94583	1.0969	34.483	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94583	1.0969	34.483	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85226000	48383000	36843000	0	0	0	85226000	48383000	36843000	0	0	0	0	0	0	28362	1918	26849	176477;176478;176479	238659;238660;238661	238660			3	
KTPESKPTILVK	3	Unmodified	1339.8075	0.80750177	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	22.599	21.659	3;4	0.0020739	17973	160511_QHF_FH_JSI10i_3	60.628	52.717			0.58875	0.46832	31.932	4	4	Linear	0.45463	0.37789	NaN	1	1	Median	0.36791	0.43131	45.503	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57392	0.58039	NaN	1	1	Median	449270000	272660000	176610000	104610000	64250000	40361000	173720000	121730000	51987000	0	0	0	170940000	86682000	84258000	28363	5577	26850	176480;176481;176482;176483	238662;238663;238664;238665	238663			4	
KTPLALAGSPTPK	2	Unmodified	1279.75	0.7499869	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	32.863	32.817	3	0.008227	26711	160511_QHF_FH_JSI9i_3	42.388	34.325			0.91975	0.8857	6.125	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91193	0.84816	NaN	1	1	Median	0.92765	0.9249	NaN	1	1	Median	106330000	55604000	50731000	0	0	0	0	0	0	44953000	24179000	20775000	61381000	31425000	29956000	28364	727	26851	176484;176485;176486	238666;238667;238668	238667			3	
KTPNFPSSVLFMK	2	Unmodified	1494.7905	0.7904715	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	72.22	71.299	2;3	1.0673E-05	59788	160511_QHF_FH_JSI10i_3	113.24	110.04			0.89614	0.91018	8.8555	7	0	Median	1.0321	0.84457	4.4664	2	0	Median	0.784	0.92666	0.54047	2	0	Median	1.0531	0.99324	NaN	1	0	Median	0.82525	0.83288	12.55	2	0	Median	639070000	308070000	331010000	181080000	85291000	95787000	112340000	55993000	56348000	195350000	90331000	105020000	150300000	76450000	73848000	28365	5161	26852	176487;176488;176489;176490;176491;176492;176493	238669;238670;238671;238672;238673;238674;238675;238676;238677;238678;238679;238680;238681;238682;238683;238684;238685;238686;238687	238672			19	
KTPNPANQYQFDK	2	Unmodified	1549.7525	0.75250609	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		27.296	26.641	3	0.00012484	22064	160511_QHF_FH_JSI10i_3	87.498	78.9			0.87993	0.90654	4.5605	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78604	0.87778	NaN	1	1	Median	0.98504	0.93625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71873000	37586000	34288000	0	0	0	29106000	19180000	9925600	42768000	18406000	24362000	0	0	0	28366	2469	26853	176494;176495;176496;176497	238688;238689;238690;238691;238692	238690			5	
KTPNQMK	2	Unmodified	845.44292	0.44292261	535	O75494	SRSF10	Serine/arginine-rich splicing factor 10	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				4.9113	4.4119	2	0.02394	2405	160511_QHF_FH_JSI9i_3	72.138	37.314			2.2144	1.8316	NaN	1	1	Median	2.2144	1.8316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71330000	33206000	38124000	71330000	33206000	38124000	0	0	0	0	0	0	0	0	0	28367	535	26854	176498	238693	238693			1	
KTPPAPSPFDLPELK	2	Unmodified	1635.8872	0.88720866	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	71.051	70.852	2;3	0.0024498	61386	160511_QHF_FH_JSI12i_3	76.655	51.269			0.90252	0.92096	44.607	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96596	0.91531	NaN	1	0	Median	0.62269	0.62489	54.848	2	1	Median	221490000	118760000	102730000	0	0	0	0	0	0	56956000	22455000	34501000	164540000	96310000	68228000	28368	662	26855	176499;176500;176501	238694;238695;238696	238696			3	
KTPPTMEEILK	2	Unmodified	1285.6952	0.69517413	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.944	45.702	3	0.012151	40255	160511_QHF_FH_JSI11i_3	38.58	26.521			0.83885	0.85162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83885	0.85162	NaN	1	0	Median	34231000	20596000	13635000	0	0	0	0	0	0	0	0	0	34231000	20596000	13635000	28369	3500	26856	176502;176503	238697;238698	238697			2	
KTPQGPPEIYSDTQFPSLQSTAK	2	Unmodified	2519.2544	0.25438337	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	66.659	65.953	3	3.3865E-24	58579	160511_QHF_FH_JSI11i_3	160.69	159.73			0.83101	0.86837	25.594	9	0	Median	1.5736	1.3177	4.271	2	0	Median	0.65166	0.76593	14.88	3	0	Median	0.83101	0.77095	14.224	3	0	Median	0.94657	0.95897	NaN	1	0	Median	1587900000	873930000	713990000	161010000	69996000	91018000	363850000	233160000	130690000	829160000	440400000	388750000	233900000	130370000	103530000	28370	5383	26857	176504;176505;176506;176507;176508;176509;176510;176511;176512	238699;238700;238701;238702;238703;238704;238705;238706;238707;238708;238709;238710;238711;238712;238713;238714;238715;238716;238717	238699			19	
KTPSKPPAQLSPSVPK	3	Unmodified	1660.9512	0.9512059	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	2	By MS/MS		By MS/MS		3	0			3							1		2		27.679	27.219	3;4	0.00065086	22408	160511_QHF_FH_JSI9i_3	75.018	59.382			0.87955	0.70738	11.333	3	3	Median	0.87955	0.70738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79861	0.7361	15.695	2	2	Median	NaN	NaN	NaN	0	0	Median	226280000	118220000	108060000	54504000	28371000	26133000	0	0	0	171770000	89847000	81926000	0	0	0	28371	1150	26858	176513;176514;176515	238718;238719;238720	238720			3	
KTPVASDQR	1	Unmodified	1000.5302	0.53015772	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.4389	4.9395	2	0.017957	2931	160511_QHF_FH_JSI9i_3	42.869	3.2063			1.362	1.0814	NaN	1	0	Median	1.362	1.0814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29986000	12071000	17914000	29986000	12071000	17914000	0	0	0	0	0	0	0	0	0	28372	1576	26859	176516	238721	238721			1	
KTPVPGK	2	Unmodified	725.44357	0.44357454	1946	P61224;A6NIZ1	RAP1B	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	6.3262	6.0953	2	0.046139	3684	160511_QHF_FH_JSI12i_3	44.721	9.8288			0.98214	0.96868	18.151	4	0	Median	1.3597	1.1233	NaN	1	0	Median	0.62187	0.72857	NaN	1	0	Median	1.0161	0.98309	NaN	1	0	Median	0.94931	0.95449	NaN	1	0	Median	1866100000	999090000	867000000	322890000	136620000	186270000	264200000	154880000	109320000	477500000	271600000	205900000	801490000	435990000	365510000	28373	1946	26860	176517;176518;176519;176520	238722;238723;238724	238724			3	
KTQALPK	2	Unmodified	784.48069	0.48068833	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	6.1272	5.8962	2	0.019592	3565	160511_QHF_FH_JSI12i_3	58.604	21.511			0.9178	0.98077	19.087	4	0	Median	1.565	1.3072	NaN	1	0	Median	0.92686	1.0549	NaN	1	0	Median	0.89854	0.84795	NaN	1	0	Median	0.90883	0.91187	NaN	1	0	Median	803390000	420530000	382860000	101600000	40338000	61265000	147940000	78694000	69249000	193800000	99783000	94017000	360040000	201710000	158330000	28374	1856	26861	176521;176522;176523;176524	238725;238726;238727;238728	238728			4	
KTQDQISNIK	2	Unmodified	1173.6354	0.63535107	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							3	2	5	3	11.348	11.036	2;3	1.1613E-14	8676	160511_QHF_FH_JSI11i_3	167.09	128.31			0.83642	0.75775	36.666	13	7	Median	1.3326	1.1438	60.056	3	3	Plateau	0.92451	1.1147	7.1337	2	0	Median	0.69736	0.65848	21.88	5	3	Median	1.07	1.0869	41.063	3	1	Plateau	3165700000	1558900000	1606800000	295920000	142200000	153720000	239050000	120020000	119040000	908110000	435100000	473010000	1722600000	861580000	861020000	28375	2579	26862	176525;176526;176527;176528;176529;176530;176531;176532;176533;176534;176535;176536;176537	238729;238730;238731;238732;238733;238734;238735;238736;238737;238738;238739;238740;238741;238742;238743;238744;238745	238730			17	
KTQDQISNIKYHEEFEK	3	Acetyl (K)	2178.0593	0.059312378	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		52.972	43.247	4	0.0064566	23407	160513_QHF_FH_JSI11Kac_6	49.34	44.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5846000	5846000	0	0	0	0	0	0	0	5846000	5846000	0	0	0	0	28376	2579	26863	176538	238746	238746	2549;2550		1	
KTQELAFATHQDPADPK	2	Unmodified	1895.9377	0.93774068	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.062	29.997	3	0.025153	25222	160511_QHF_FH_JSI12i_3	33.697	15.997			0.51108	0.52739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51108	0.52739	NaN	1	1	Median	23941000	18430000	5511100	0	0	0	0	0	0	0	0	0	23941000	18430000	5511100	28377	4181	26864	176539	238747	238747			1	
KTQEQLALEMAELTAR	1	Unmodified	1830.9509	0.9509479	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	71.637	70.801	2;3	6.5772E-05	61955	160511_QHF_FH_JSI11i_2	84.653	67.909			0.96601	1.0136	13.467	6	2	Median	1.2887	1.1213	14.619	2	1	Median	0.81941	1.0074	NaN	1	0	Median	0.90259	0.90886	15.755	2	1	Median	0.94557	1.0302	NaN	1	0	Median	424130000	185040000	239090000	124670000	55138000	69529000	34297000	17644000	16653000	227670000	93110000	134560000	37502000	19147000	18354000	28378	1270	26865	176540;176541;176542;176543;176544;176545	238748;238749;238750;238751;238752;238753	238752			6	
KTQETLSQAGQK	2	Unmodified	1317.6888	0.6888432	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	7.1068	7.1557	2;3	2.4076E-07	4661	160511_QHF_FH_JSI12i_3	120.57	109.36			1.1387	1.1041	11.84	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3166	1.2265	10.352	2	0	Median	1.0155	1.0342	4.7484	2	1	Median	587590000	251890000	335700000	0	0	0	0	0	0	239030000	92999000	146040000	348560000	158890000	189660000	28379	329	26866	176546;176547;176548;176549	238754;238755;238756;238757;238758;238759	238759			6	
KTQMAEVLPSPR	1	Unmodified	1355.7231	0.72312022	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				67.915	66.425	3	0.055751	54438	160511_QHF_FH_JSI9i_3	13.679	4.2466			0.069648	0.055523	NaN	1	0	Median	0.069648	0.055523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162240000	154730000	7501900	162240000	154730000	7501900	0	0	0	0	0	0	0	0	0	28380	999	26867	176550	238760	238760			1	
KTQNDVLHAENVK	2	Unmodified	1494.7791	0.77905519	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		4	10							4	4	3	3	15.654	15.164	2;3;4	4.7861E-07	11565	160511_QHF_FH_JSI12i_3	131.69	95.267			0.79553	0.8627	28.212	14	2	Median	1.135	0.95369	47.007	4	2	Median	0.93728	1.1227	13.119	4	0	Median	0.74669	0.71813	4.9558	3	0	Median	0.72166	0.75906	6.358	3	0	Plateau	2340600000	1198500000	1142100000	160840000	79446000	81391000	238850000	112070000	126780000	973710000	548610000	425100000	967200000	458330000	508870000	28381	1426	26868	176551;176552;176553;176554;176555;176556;176557;176558;176559;176560;176561;176562;176563;176564	238761;238762;238763;238764;238765;238766;238767;238768;238769;238770;238771;238772;238773;238774;238775;238776;238777;238778;238779	238777			19	
KTQQLHPVLQK	2	Unmodified	1318.7721	0.77211932	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.244	14.244	3	0.015728	11516	160511_QHF_FH_JSI11i_3	35.523	29.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28382	4632	26869	176565	238780	238780			1	
KTQVLQPEEK	2	Unmodified	1198.6558	0.65575216	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	11.522	11.372	2;3	0.0072914	8942	160511_QHF_FH_JSI11i_3	67.726	38.253			1.0306	0.99454	38.332	4	1	Median	NaN	NaN	NaN	0	0	Median	1.6196	1.8966	NaN	1	0	Median	0.91989	0.84472	6.8111	2	1	Median	1.1166	1.1159	NaN	1	0	Median	179070000	83656000	95416000	0	0	0	25541000	9618000	15923000	110940000	53556000	57384000	42589000	20481000	22108000	28383	5640	26870	176566;176567;176568;176569	238781;238782;238783	238781			3	
KTSETLSQAGQK	2	Unmodified	1276.6623	0.6622941	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								3	2	2	7.3443	7.1589	2;3	1.9912E-05	4564	160511_QHF_FH_JSI12i_3	77.541	67.853			0.74442	0.81738	31.84	6	1	Median	NaN	NaN	NaN	0	0	Median	0.88248	1.0286	22.726	2	0	Median	0.6195	0.57324	13.924	2	1	Median	0.88732	0.90465	24.127	2	0	Median	279490000	169640000	109840000	0	0	0	50188000	29700000	20489000	94444000	58943000	35502000	134850000	81001000	53852000	28384	1858	26871	176570;176571;176572;176573;176574;176575;176576	238784;238785;238786;238787;238788;238789;238790	238787			6	
KTSKNKSSLSR	3	3 Acetyl (K)	1360.731	0.73104237	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	13.3	0.7					1	3	3				3	2	2	27.771	19.779	2	5.3717E-09	11902	160513_QHF_FH_JSI12Kac_3	119.45	99.687			0.93477	1.0657	7.8975	7	0	Median	NaN	NaN	NaN	0	0	Median	0.89539	1.1111	3.5954	3	0	Plateau	1.1112	1.0942	3.7387	2	0	Median	0.85305	0.94255	3.6327	2	0	Median	90070000	46764000	43306000	0	0	0	28982000	15850000	13132000	26144000	12518000	13626000	34943000	18395000	16548000	28385	2285	26872	176577;176578;176579;176580;176581;176582;176583	238791;238792;238793;238794;238795;238796	238794	2394;2395;2396		6	
KTSTSPPPEK	2	Unmodified	1070.5608	0.56078914	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	4.9763	5.0225	2	0.007263	2589	160511_QHF_FH_JSI12i_3	59.426	43.223			1.0643	1.0651	7.564	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1956	1.1236	NaN	1	0	Median	0.94739	1.0096	NaN	1	0	Median	129510000	63371000	66144000	0	0	0	0	0	0	58964000	24695000	34269000	70551000	38676000	31875000	28386	4657	26873	176584;176585	238797;238798;238799	238799			3	
KTTPELEIVLQK	2	Unmodified	1397.813	0.81298108	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	54.539	54.301	2	0.011167	46589	160511_QHF_FH_JSI12i_3	61.815	46.843			1.042	1.1099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.042	1.1099	NaN	1	1	Median	47411000	26457000	20953000	0	0	0	0	0	0	0	0	0	47411000	26457000	20953000	28387	648	26874	176586	238800	238800			1	
KTTPLLSFLK	2	Unmodified	1146.7012	0.70124579	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	68.807	67.326	3	0.0032976	57350	160511_QHF_FH_JSI12i_3	47.894	36.163			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8484500	8484500	0	0	0	0	8484500	8484500	0	0	0	0	0	0	0	28388	4565	26875	176587;176588;176589	238801;238802;238803	238803			3	
KTTTDLK	2	Unmodified	805.45453	0.45453316	5372	Q9UKL3	CASP8AP2	CASP8-associated protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	34.47	33.954	3	0.039617	28639	160511_QHF_FH_JSI10i_3	30.185	7.1658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	353820000	0	353820000	0	0	0	179130000	0	179130000	100440000	0	100440000	74258000	0	74258000	28389	5372	26876	176590;176591;176592	238804;238805;238806	238805			3	
KTYEIWHR	1	Acetyl (K)	1173.5931	0.59309232	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.603	38.902	3	0.027964	21179	160513_QHF_FH_JSI11Kac_6	41.117	30.886			1.8404	1.8094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8404	1.8094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13628000	2428600	11200000	0	0	0	0	0	0	13628000	2428600	11200000	0	0	0	28390	2578	26877	176593	238807	238807			1	
KVAAIEALNDGELQK	2	Unmodified	1597.8675	0.86753585	1707	P50502;Q8IZP2	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	3	1	48.855	48.293	2;3	7.8207E-07	42661	160511_QHF_FH_JSI11i_3	137.59	92.228			0.89759	0.87425	30.307	6	4	Median	NaN	NaN	NaN	0	0	Median	0.80492	0.95012	48.723	2	2	Median	0.8776	0.8477	26.837	3	2	Median	0.91804	0.92122	NaN	1	0	Median	373920000	191450000	182470000	0	0	0	35797000	19616000	16181000	244540000	128320000	116220000	93586000	43513000	50074000	28391	1707	26878	176594;176595;176596;176597;176598;176599;176600	238808;238809;238810;238811;238812;238813;238814;238815	238811			8	
KVAPAPAVVK	2	Unmodified	978.6226	0.62260154	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	16.056	16.107	2;3	0.0077721	13044	160511_QHF_FH_JSI9i_3	42.336	29.759			0.50366	0.50765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50366	0.50765	NaN	1	1	Median	174870000	108600000	66270000	0	0	0	0	0	0	0	0	0	174870000	108600000	66270000	28392	2007	26879	176601;176602	238816;238817	238816			2	
KVAVATPAK	2	Unmodified	883.5491	0.54910224	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	10.886	10.578	2	0.011405	7737	160511_QHF_FH_JSI12i_3	49.06	5.8136			1.1232	1.0177	6.7475	2	0	Median	1.3299	1.0675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94869	0.97031	NaN	1	0	Median	1435300000	732030000	703250000	221440000	82896000	138550000	0	0	0	0	0	0	1213800000	649140000	564700000	28393	1154	26880	176603;176604	238818;238819	238819			2	
KVDAAELLR	1	Unmodified	1013.5869	0.58694431	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	37.745	37.382	2;3	0.0005294	32724	160511_QHF_FH_JSI11i_3	79.148	35.34			0.91935	0.89115	21.301	5	0	Median	NaN	NaN	NaN	0	0	Median	0.92024	1.0608	NaN	1	0	Median	1.0706	1.0093	21.645	2	0	Median	0.76374	0.77537	19.682	2	0	Median	648410000	315920000	332490000	0	0	0	33446000	16128000	17318000	252540000	115010000	137530000	362430000	184780000	177650000	28394	2303	26881	176605;176606;176607;176608;176609	238820;238821;238822;238823	238820			3	
KVDAETVGR	1	Unmodified	973.51926	0.51925868	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	9.1344	8.9484	2;3	0.00019355	6858	160511_QHF_FH_JSI10i_2	85.807	53.197			0.9282	0.95267	16.18	6	0	Median	1.0485	0.90087	NaN	1	0	Median	0.82167	1.0074	NaN	1	0	Median	1.1159	1.0578	15.914	3	0	Plateau	0.70918	0.70502	NaN	1	0	Median	942140000	451720000	490420000	121380000	49227000	72154000	135560000	67953000	67603000	530570000	243930000	286640000	154630000	90614000	64018000	28395	989	26882	176610;176611;176612;176613;176614;176615	238824;238825;238826;238827;238828;238829;238830;238831;238832;238833;238834	238831			11	
KVDAVFVGTGDLFAAMLLAWTHK	2	Unmodified	2489.3141	0.31408728	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	99.117	91.023	3;4	2.1334E-17	49484	160513_QHF_FH_JSI12Kac_6	123.43	109.98			0.7858	0.84191	15.698	6	2	Median	0.85524	0.73251	14.434	2	1	Median	0.70519	0.828	7.6088	2	1	Median	1.0952	1.067	NaN	1	0	Median	0.80409	0.874	NaN	1	0	Median	783410000	448240000	335180000	255300000	125270000	130020000	371130000	236120000	135010000	96308000	48281000	48027000	60678000	38563000	22115000	28396	165	26883	176616;176617;176618;176619;176620;176621	238835;238836;238837;238838;238839;238840;238841;238842;238843	238840			9	
KVDEAIALFQK	2	Unmodified	1260.7078	0.70778773	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	5.75	5.36		1	2					1		2		1	1	55.43	55.009	3	8.1112E-06	48608	160511_QHF_FH_JSI11i_3	86.313	70.423			1.0179	1.0584	11.74	3	0	Plateau	1.0179	0.87017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93696	0.89784	NaN	1	0	Median	1.0672	1.0812	NaN	1	0	Median	1173400000	641840000	531590000	137640000	67633000	70006000	0	0	0	299430000	159110000	140320000	736370000	415100000	321270000	28397	1283	26884	176622;176623;176624;176625	238844;238845;238846;238847	238844			3	
KVDEEAEAK	2	Unmodified	1017.4979	0.49785453	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	5.6037	5.2388	2	0.00062495	3135	160511_QHF_FH_JSI9i_2	77.379	45.445			0.99375	0.93752	37.19	8	3	Median	1.418	1.1867	47.754	2	1	Median	0.53969	0.64204	2.565	2	0	Median	1.2422	1.2399	25.115	2	1	Median	0.86625	0.92427	35.97	2	1	Median	899840000	461600000	438240000	166460000	70334000	96129000	235470000	143930000	91533000	284670000	136350000	148320000	213240000	110980000	102260000	28398	2795	26885	176626;176627;176628;176629;176630;176631;176632;176633	238848;238849;238850;238851;238852;238853;238854	238854			7	
KVDGSVNAYAINVSQK	2	Unmodified	1691.8842	0.88424855	3782	Q8WVK2	SNRNP27	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	40.911	40.564	2;3	1.9181E-10	34625	160511_QHF_FH_JSI12i_3	150.12	134.92			1.145	1.2189	29.239	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2803	1.5899	NaN	1	1	Median	0.88445	0.82622	NaN	1	0	Median	1.1817	1.2189	19.611	2	1	Median	362240000	180220000	182020000	0	0	0	40283000	21516000	18767000	96694000	42138000	54556000	225260000	116570000	108700000	28399	3782	26886	176634;176635;176636;176637;176638	238855;238856;238857;238858;238859;238860	238858			5	
KVDIEVLSVLASLGASVHK	2	Unmodified	1964.1306	0.13062683	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			6							2	2		2	101.76	101.67	3;4	8.8654E-14	88246	160511_QHF_FH_JSI12i_3	142.98	134.05			0.87404	0.73175	15.657	5	0	Median	0.87404	0.73175	NaN	1	0	Median	0.56562	0.66643	1.572	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8922	0.90566	2.9238	2	0	Median	1313700000	699710000	614040000	15837000	7914000	7923400	232390000	137200000	95188000	0	0	0	1065500000	554590000	510930000	28400	1359	26887	176639;176640;176641;176642;176643;176644	238861;238862;238863;238864;238865;238866	238864			6	
KVDIIADAAYSIFQK	2	Unmodified	1680.9087	0.90867238	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	91.832	91.566	2;3	2.1319E-06	79305	160511_QHF_FH_JSI12i_3	158.81	130.49			0.78609	1.0679	27.41	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.45085	0.50604	NaN	1	0	Median	0.95687	0.89665	NaN	1	0	Median	0.78609	0.80364	17.496	2	1	Median	581940000	268700000	313240000	0	0	0	31003000	18385000	12618000	105020000	57513000	47509000	445920000	192800000	253120000	28401	3175	26888	176645;176646;176647;176648	238867;238868;238869;238870;238871;238872;238873	238873			7	
KVDKIEELDQENEAALENGIK	3	Unmodified	2384.2071	0.20709883	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							1	5	1		58.217	57.256	3;4	2.8829E-13	50469	160511_QHF_FH_JSI11i_3	122.19	114.29			0.75793	0.81009	49.381	7	6	Median	1.4908	1.2668	NaN	1	1	Median	0.4438	0.54747	54.428	5	5	Median	0.86053	0.81009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	306120000	164740000	141380000	21732000	7905100	13827000	139720000	87198000	52517000	144670000	69642000	75030000	0	0	0	28402	1556	26889	176649;176650;176651;176652;176653;176654;176655	238874;238875;238876;238877;238878;238879;238880;238881	238874			8	
KVDLETLK	2	Unmodified	944.55425	0.5542472	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.811	30.747	3	0.019176	25946	160511_QHF_FH_JSI12i_3	38.303	19.864			3.1529	3.2859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1529	3.2859	NaN	1	1	Median	40432000	12309000	28123000	0	0	0	0	0	0	0	0	0	40432000	12309000	28123000	28403	4253	26890	176656	238882	238882			1	
KVDLSQPLIATCR	1	Unmodified	1499.813	0.81299786	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			52.683	51.107	3	0.019128	42688	160511_QHF_FH_JSI10i_3	37.654	23.302			0.80241	0.80458	59.601	2	2	Median	0.63389	0.52789	NaN	1	1	Median	1.0157	1.2263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163500000	90899000	72602000	73999000	43133000	30866000	89502000	47767000	41736000	0	0	0	0	0	0	28404	2760	26891	176657;176658	238883;238884	238883			2	
KVDQPPEAK	2	Unmodified	1010.5397	0.53965977	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.43	1	8	1				4			2	4	4	4	8.3981	5.8029	2;3	0.00086533	5017	160511_QHF_FH_JSI11i_2	72.928	58.771			0.99587	1.0106	15.129	14	1	Median	1.3106	1.1309	20.617	2	0	Median	0.88818	1.0743	25.788	4	1	Median	1.0565	1.0523	4.3022	4	0	Median	0.90428	0.97245	3.224	4	0	Median	1918300000	901860000	1016500000	479120000	191140000	287980000	448610000	198750000	249860000	435370000	215010000	220360000	555250000	296960000	258290000	28405	3852	26892	176659;176660;176661;176662;176663;176664;176665;176666;176667;176668;176669;176670;176671;176672	238885;238886;238887;238888;238889;238890;238891;238892;238893;238894;238895;238896;238897;238898;238899	238894			13	
KVDSSVLGSLSSVPLTGFSFSPGNSSLFGK	2	Unmodified	3000.5444	0.54441738	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			101.78	101.61	3	1.0027E-38	82654	160511_QHF_FH_JSI9i_3	150.14	148.03			0.71094	0.6848	20.22	2	0	Median	0.72922	0.59356	NaN	1	0	Median	0.69311	0.79005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	474070000	293910000	180150000	90574000	56792000	33782000	383490000	237120000	146370000	0	0	0	0	0	0	28406	5382	26893	176673;176674	238900;238901	238901			2	
KVDTTPNQGK	2	Unmodified	1086.5669	0.56693715	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.553	1	8	3							4	2	5	1	5.5747	5.3314	2;3	2.6905E-09	3282	160511_QHF_FH_JSI11i_3	147.4	98.308			1.0525	1.0148	20.918	12	3	Median	1.7132	1.4799	31.51	4	3	Linear	0.87616	1.0804	12.088	2	0	Median	1.0691	1.0255	19.563	5	0	Median	1.0491	1.087	NaN	1	0	Median	1613300000	819020000	794300000	278210000	123410000	154800000	168230000	93337000	74898000	653970000	337870000	316100000	512910000	264400000	248510000	28407	5213	26894	176675;176676;176677;176678;176679;176680;176681;176682;176683;176684;176685;176686	238902;238903;238904;238905;238906;238907;238908;238909;238910;238911;238912;238913	238903			12	
KVDVDEYDENK	2	Unmodified	1352.6096	0.60958983	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	20.747	20.24	2	0.0041833	17438	160511_QHF_FH_JSI11i_1	73.067	45.763			0.57047	0.64697	35.768	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.57047	0.64697	NaN	1	1	Median	0.58832	0.57152	NaN	1	1	Median	0.98711	1.1193	NaN	1	1	Median	51101000	32908000	18192000	0	0	0	23555000	17735000	5820000	17884000	12422000	5462300	9661500	2751400	6910100	28408	296	26895	176687;176688;176689;176690	238914;238915;238916;238917	238914			4	
KVDVEEEFFALRK	2	Unmodified	1608.8512	0.8511575	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		66.024	64.906	3	0.00036891	57183	160511_QHF_FH_JSI11i_3	74.133	67.404			0.9594	0.99437	46.573	4	3	Median	1.0575	0.86075	70.728	2	2	Median	0.66439	0.77087	NaN	1	1	Median	1.3854	1.2827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144520000	69474000	75046000	47334000	24697000	22636000	24504000	13863000	10641000	72682000	30914000	41768000	0	0	0	28409	1576	26896	176691;176692;176693;176694;176695	238918;238919;238920;238921;238922	238918			5	
KVDVSSVPDHLK	2	Unmodified	1322.7194	0.71941505	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	32.877	32.783	3	0.019865	27709	160511_QHF_FH_JSI12i_3	33.195	25.651			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28410	3196	26897	176696	238923	238923			1	
KVDVTSK	2	Unmodified	775.44397	0.44396847	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	1	By matching			By MS/MS	2.33	0.471		2	1							1			2	5.934	5.6327	2	0.032516	3339	160511_QHF_FH_JSI12i_3	51.346	27.147			0.84999	0.8901	34.453	3	0	Median	1.7913	1.5194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77266	0.84287	7.7105	2	0	Median	727280000	377060000	350220000	116520000	48658000	67864000	0	0	0	0	0	0	610760000	328400000	282360000	28411	4331	26898	176697;176698;176699	238924	238924			1	
KVDWLTEK	2	Unmodified	1017.5495	0.54949617	1917;1481;2519	P38919;P60842;Q14240	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	3	2	31.711	31.065	2;3	0.00034736	28903	160511_QHF_FH_JSI12i_3	111.46	57.487			0.74507	0.72825	87.868	10	8	Median	1.6416	1.3233	145.02	3	3	Plateau	0.40134	0.46424	1.4053	2	2	Median	1.4874	1.4371	91.645	3	3	Median	1.2014	1.2148	10.1	2	0	Median	6232900000	3206400000	3026600000	284530000	127930000	156600000	619410000	394080000	225330000	2630600000	1415200000	1215400000	2698400000	1269100000	1429300000	28412	1481;1917;2519	26899	176700;176701;176702;176703;176704;176705;176706;176707;176708;176709	238925;238926;238927;238928;238929;238930;238931;238932;238933;238934;238935;238936;238937	238936			13	
KVEAPETNIDK	2	Unmodified	1242.6456	0.6455814	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	19.65	19.657	2	0.0015302	15962	160511_QHF_FH_JSI12i_3	79.693	50.606			0.94454	0.91023	36.914	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2674	1.1817	NaN	1	1	Median	0.70391	0.70112	NaN	1	1	Median	40772000	22052000	18720000	0	0	0	0	0	0	12763000	5350800	7412300	28009000	16701000	11308000	28413	484	26900	176710;176711	238938;238939	238939			2	
KVEAPFIPK	2	Unmodified	1027.6066	0.60661712	1121;1215	P22694;P22612;P17612	PRKACB;PRKACG;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6								2	3	3	40.749	40.217	2;3	0.00082761	34229	160511_QHF_FH_JSI12i_3	52.579	44.653			0.93863	0.94162	23.06	8	3	Median	NaN	NaN	NaN	0	0	Median	1.0359	1.2477	17.975	2	0	Median	0.96138	0.92436	25.644	3	2	Median	0.83581	0.91173	12.256	3	1	Median	2229300000	1096300000	1132900000	0	0	0	185250000	96152000	89095000	937460000	436930000	500530000	1106600000	563250000	543300000	28414	1215;1121	26901	176712;176713;176714;176715;176716;176717;176718;176719	238940;238941;238942;238943;238944;238945;238946;238947	238946			7	
KVEAQLQELQVK	2	Unmodified	1411.8035	0.80347903	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.29	1	9	5					7	2	4	5	8	7	44.985	40.925	2;3	9.7217E-16	34432	160511_QHF_FH_JSI12i_3	156.69	120.74			0.95957	1.0005	27.007	23	3	Median	0.98782	0.84133	43.607	4	0	Median	0.83397	0.97003	10.405	5	0	Median	1.0819	1.0463	30.414	8	3	Median	0.8731	0.9474	21.93	6	0	Median	7340900000	3561600000	3779300000	512040000	265240000	246800000	925150000	478580000	446570000	2261100000	1125300000	1135800000	3642600000	1692600000	1950000000	28415	1436	26902	176720;176721;176722;176723;176724;176725;176726;176727;176728;176729;176730;176731;176732;176733;176734;176735;176736;176737;176738;176739;176740;176741;176742;176743	238948;238949;238950;238951;238952;238953;238954;238955;238956;238957;238958;238959;238960;238961;238962;238963;238964;238965;238966;238967;238968;238969;238970;238971;238972;238973;238974;238975;238976;238977;238978;238979	238974			32	
KVEDLAR	1	Unmodified	829.46577	0.46576654	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	9.0309	8.6056	2	0.046904	6244	160511_QHF_FH_JSI11i_2	44.349	14.164			0.84091	0.88241	10.114	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94443	0.94783	NaN	1	0	Median	0.74874	0.82151	NaN	1	0	Median	131860000	66022000	65839000	0	0	0	0	0	0	86294000	42572000	43722000	45568000	23450000	22117000	28416	5042	26903	176744;176745	238980	238980			1	
KVEDLFLTFAK	2	Unmodified	1309.7282	0.72818882	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	78.381	77.791	3	0.00042022	68679	160511_QHF_FH_JSI9i_2	61.435	54.547			0.93423	0.9337	8.0192	6	0	Median	0.98566	0.85406	NaN	1	0	Median	0.78256	0.9419	NaN	1	0	Median	1.0561	1.0033	11.967	2	0	Median	0.90986	0.93491	1.4192	2	0	Median	167610000	88065000	79545000	14357000	9177000	5179600	14987000	6384800	8601700	65035000	34091000	30943000	73233000	38412000	34820000	28417	2470	26904	176746;176747;176748;176749;176750;176751	238981;238982;238983;238984;238985;238986;238987;238988;238989	238984			9	
KVEDMMK	2	Unmodified	879.41941	0.41940998	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.24		8	6					4		2	4	6	6	13.572	11.214	2;3	0.0024063	9592	160511_QHF_FH_JSI9i_2	73.26	19.103			1.1002	1.185	80.554	18	11	Median	0.80819	0.68001	23.815	2	0	Median	1.4698	1.7378	84.537	4	3	Median	1.1921	1.2076	107.49	6	5	Median	1.3584	1.372	66.982	6	3	Median	21917000000	10474000000	11442000000	1313900000	552740000	761160000	4618300000	2131500000	2486800000	7869800000	3850700000	4019000000	8114600000	3939500000	4175100000	28418	1033	26905	176752;176753;176754;176755;176756;176757;176758;176759;176760;176761;176762;176763;176764;176765;176766;176767;176768;176769	238990;238991;238992;238993;238994;238995;238996;238997;238998;238999;239000;239001;239002;239003;239004;239005;239006;239007;239008;239009	238999			19	
KVEDMMK	2	Oxidation (M)	895.41432	0.4143246	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1		By MS/MS	By MS/MS		6.33	6.13		2						1			1	2		10.434	7.0059	2;3	0.008298	9700	160511_QHF_FH_JSI10i_2	50.703	10.435			0.3396	0.36766	36.214	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.34181	0.42285	NaN	1	1	Median	0.49286	0.49474	49.584	2	0	Median	NaN	NaN	NaN	0	0	Median	916160000	641600000	274570000	0	0	0	426410000	284450000	141960000	489750000	357140000	132610000	0	0	0	28419	1033	26905	176770;176771;176772	239010;239011;239012	239012		636;637	2	
KVEEAEPEEFVVEK	2	Unmodified	1660.8196	0.8195826	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.75	9	8	4							4	5	6	6	45.224	44.541	2;3	1.6313E-14	37690	160511_QHF_FH_JSI12i_3	162.97	146.72			0.89013	0.89815	25.593	20	0	Median	0.81118	0.57872	12.379	4	0	Linear	0.71807	0.86898	4.0222	4	0	Median	1.0987	1.0765	9.9615	6	0	Median	0.94559	1.0461	16.156	6	0	Median	7725900000	3874600000	3851400000	937980000	459870000	478110000	1689700000	995990000	693710000	2806800000	1211400000	1595500000	2291400000	1207300000	1084100000	28420	2367	26906	176773;176774;176775;176776;176777;176778;176779;176780;176781;176782;176783;176784;176785;176786;176787;176788;176789;176790;176791;176792;176793	239013;239014;239015;239016;239017;239018;239019;239020;239021;239022;239023;239024;239025;239026;239027;239028;239029;239030;239031;239032;239033;239034;239035;239036;239037;239038;239039;239040;239041;239042;239043;239044;239045;239046;239047;239048;239049;239050;239051;239052;239053;239054;239055;239056;239057;239058;239059	239057			47	
KVEEDEAGGR	1	Unmodified	1088.5098	0.5098162	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	5.1156	4.8105	2;3	0.00024149	2618	160511_QHF_FH_JSI12i_2	77.379	34.133			0.95114	1.0521	19.345	3	2	Median	NaN	NaN	NaN	0	0	Median	0.85778	1.0027	NaN	1	0	Median	1.4615	1.4322	NaN	1	1	Median	0.95114	1.0521	NaN	1	1	Median	193270000	88357000	104910000	0	0	0	47682000	24507000	23175000	44013000	14541000	29471000	101580000	49309000	52267000	28421	3902	26907	176794;176795;176796;176797	239060;239061;239062;239063	239062			4	
KVEEDLK	2	Unmodified	859.4651	0.46509784	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.13		8	2				2	1		2	3	3	5	9.5952	7.2583	2;3	0.0082921	4760	160513_QHF_FH_JSI12Kac_4	55.531	0			0.87862	0.97551	18.938	13	0	Median	1.2097	1.0229	0.91153	2	0	Median	0.85306	1.0499	7.8498	3	0	Plateau	0.91799	0.95336	30.886	3	0	Median	0.87862	0.93204	18.972	5	0	Median	6238000000	3445400000	2792600000	1080200000	547690000	532460000	1188100000	655800000	532260000	2229500000	1302300000	927160000	1740300000	939580000	800680000	28422	1707	26908	176798;176799;176800;176801;176802;176803;176804;176805;176806;176807;176808;176809;176810	239064;239065;239066;239067;239068;239069;239070;239071;239072;239073;239074;239075	239070			12	
KVEEEEDESALK	2	Unmodified	1404.662	0.66201933	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	3.42	9	3					1			3	3	3	4	16.519	15.483	2;3	2.2927E-07	13206	160511_QHF_FH_JSI12i_1	131.69	96.999			0.90431	0.86889	36.59	13	6	Median	1.0791	0.87303	4.0764	3	1	Plateau	0.74323	0.86294	33.221	3	2	Median	0.90431	0.89165	53.351	3	1	Median	0.83519	0.87462	44.966	4	2	Median	1565600000	831870000	733700000	345450000	145290000	200170000	451310000	269670000	181650000	354060000	193600000	160460000	414740000	223310000	191430000	28423	2545	26909	176811;176812;176813;176814;176815;176816;176817;176818;176819;176820;176821;176822;176823	239076;239077;239078;239079;239080;239081;239082;239083;239084;239085;239086;239087;239088;239089;239090	239081			15	
KVEELEGEITTLNHK	2	Unmodified	1738.9101	0.91012895	2298	Q10589	BST2	Bone marrow stromal antigen 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							1	2	4	4	45.358	44.954	2;3	2.2476E-07	38335	160511_QHF_FH_JSI12i_3	134.98	119.09			1.0671	1.1966	124.43	10	9	Median	1.9256	1.6402	NaN	1	1	Median	0.66078	0.81828	94.946	2	1	Median	0.88536	0.89424	206.84	3	3	Median	1.0441	1.0821	117.64	4	4	Median	2914400000	1461400000	1453000000	196320000	73673000	122650000	308760000	172170000	136600000	1081000000	553720000	527240000	1328400000	661830000	666520000	28424	2298	26910	176824;176825;176826;176827;176828;176829;176830;176831;176832;176833;176834	239091;239092;239093;239094;239095;239096;239097;239098;239099;239100;239101;239102;239103;239104;239105	239105			14	
KVEELQR	1	Unmodified	900.50288	0.50288033	2452;5219	Q13614;Q9P2M7	MTMR2;CGN	Myotubularin-related protein 2;Cingulin	no	no	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	7.8337	7.8826	2	0.032516	5309	160511_QHF_FH_JSI12i_3	51.346	11.344			0.67318	0.69352	71.396	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45193	0.41861	NaN	1	0	Median	1.0028	1.149	NaN	1	0	Median	157790000	105210000	52581000	0	0	0	0	0	0	85973000	70029000	15943000	71818000	35181000	36637000	28425	2452;5219	26911	176835;176836	239106	239106			1	
KVEEVLEEEEEEYVVEK	2	Unmodified	2108.0049	0.004876771	2123	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			62.645	61.794	3	0.047713	54637	160511_QHF_FH_JSI10i_2	26.593	11.98			0.38573	0.47211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38573	0.47211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31895000	26772000	5123600	0	0	0	31895000	26772000	5123600	0	0	0	0	0	0	28426	2123	26912	176837	239107	239107			1	
KVEEVTK	2	Unmodified	831.47018	0.47018322	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	5.719	5.4643	2	0.018106	3362	160511_QHF_FH_JSI11i_3	60.91	20.642			1.0419	1.0759	22.281	6	0	Median	1.984	1.6886	NaN	1	0	Median	0.71681	0.87551	NaN	1	0	Median	1.088	1.0745	9.87	2	0	Median	1.019	1.0759	5.1001	2	0	Median	1038700000	527320000	511380000	157980000	51441000	106540000	192350000	119940000	72413000	352710000	180370000	172340000	335650000	175570000	160080000	28427	1467	26913	176838;176839;176840;176841;176842;176843	239108;239109;239110;239111;239112;239113	239108			6	
KVEEVVYDLSIR	1	Unmodified	1448.7875	0.78749461	2688	Q15631	TSN	Translin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	59.383	58.593	2	0.00029718	50536	160511_QHF_FH_JSI12i_2	85.288	70.598			0.99739	1.0984	41.994	5	1	Median	0.98775	0.83529	NaN	1	0	Median	0.68274	0.83936	NaN	1	0	Median	1.3205	1.3217	NaN	1	0	Median	1.514	1.5934	52.615	2	1	Median	295730000	142000000	153730000	40792000	21462000	19330000	58769000	32655000	26114000	74011000	32261000	41749000	122160000	55623000	66536000	28428	2688	26914	176844;176845;176846;176847;176848	239114;239115;239116;239117	239115			4	
KVEGAPTQGR	1	Unmodified	1041.5567	0.55670682	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		5.9545	5.7064	2	0.0092801	3649	160511_QHF_FH_JSI10i_3	49.35	30.62			0.775	0.79752	8.2258	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65664	0.75246	NaN	1	0	Median	0.9147	0.84528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	224650000	123580000	101070000	0	0	0	111760000	62739000	49018000	112900000	60840000	52056000	0	0	0	28429	5213	26915	176849;176850	239118;239119	239119			2	
KVEGAQNQGK	2	Unmodified	1057.5516	0.55162144	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.12	0.331		7	1							3	3	2		1.0786	0.75633	2;3	0.00092063	544	160511_QHF_FH_JSI10i_2	56.043	51.347			0.37264	0.38532	101.99	8	7	Median	0.30161	0.26006	145.07	3	3	Median	0.70035	0.87845	81.63	3	2	Plateau	0.52103	0.52449	130.28	2	2	Median	NaN	NaN	NaN	0	0	Median	474230000	274740000	199490000	203020000	111600000	91418000	223780000	132470000	91303000	47437000	30671000	16766000	0	0	0	28430	5213	26916	176851;176852;176853;176854;176855;176856;176857;176858	239120;239121;239122;239123;239124;239125;239126;239127;239128;239129;239130	239128			11	
KVEGDIWALQK	2	Unmodified	1285.703	0.7030367	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	48.004	47.884	2	0.0010668	40935	160511_QHF_FH_JSI12i_3	77.379	46.815			1.1417	1.123	0.32442	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1847	1.1205	NaN	1	1	Median	1.1002	1.1256	NaN	1	0	Median	91030000	43565000	47465000	0	0	0	0	0	0	23611000	8175100	15435000	67420000	35390000	32030000	28431	2399	26917	176859;176860	239131;239132	239132			2	
KVEGFDLVQK	2	Unmodified	1161.6394	0.63937381	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	41.223	41.118	2	3.6788E-05	35150	160511_QHF_FH_JSI12i_3	95.573	56.551			1.1869	1.1402	9.4099	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3493	1.2186	NaN	1	0	Median	1.0441	1.0668	NaN	1	0	Median	98345000	41686000	56659000	0	0	0	0	0	0	34625000	13769000	20856000	63720000	27917000	35803000	28432	4281	26918	176861;176862	239133;239134	239134			2	
KVEHEISEGNVATAAAAALASAATK	2	Unmodified	2409.25	0.24996669	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	76.929	76.319	3;4	2.2456E-09	65754	160511_QHF_FH_JSI12i_3	79.237	71.049			0.76614	0.80744	17.871	5	2	Median	NaN	NaN	NaN	0	0	Median	0.69926	0.80991	14.423	2	1	Median	0.77257	0.73917	31.168	2	1	Median	0.79309	0.80744	NaN	1	0	Median	207210000	117200000	90004000	0	0	0	40158000	23783000	16375000	107130000	58259000	48876000	59915000	35162000	24753000	28433	3907	26919	176863;176864;176865;176866;176867	239135;239136;239137;239138;239139;239140;239141	239140			7	
KVEHLAVR	1	Unmodified	950.56615	0.56614929	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1		By MS/MS			3	0			1								1			9.6652	9.077	3	0.019859	6835	160511_QHF_FH_JSI10i_3	30.254	12.786			0.41266	0.49926	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.41266	0.49926	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88830000	62613000	26217000	0	0	0	88830000	62613000	26217000	0	0	0	0	0	0	28434	1685;31;191	26920	176868	239142	239142			1	
KVEITTETIK	2	Unmodified	1160.6653	0.66525421	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	28.385	28.362	2;3	0.0013989	23801	160511_QHF_FH_JSI12i_3	53.567	22.955			0.8371	0.81777	23.128	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0819	1.0066	15.457	2	1	Median	0.69964	0.70138	7.7939	2	0	Median	445740000	227290000	218450000	0	0	0	0	0	0	150360000	68306000	82053000	295380000	158990000	136400000	28435	3867	26921	176869;176870;176871;176872	239143;239144;239145	239145			3	
KVEKVTISNR	2	Acetyl (K)	1214.6983	0.69828568	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	1	2	2	2	29.564	20.648	3	6.6761E-05	11878	160513_QHF_FH_JSI11Kac_6	102.53	75.382			0.59378	0.67194	44.747	7	0	Median	0.90512	0.77915	NaN	1	0	Median	0.83892	0.99467	12.294	2	0	Median	0.35506	0.34588	0.68716	2	0	Median	0.59286	0.65962	2.6172	2	0	Median	100090000	60287000	39802000	8967400	4583800	4383500	31198000	15635000	15563000	40692000	28351000	12341000	19232000	11717000	7514800	28436	898	26922	176873;176874;176875;176876;176877;176878;176879	239146;239147;239148;239149;239150;239151;239152;239153;239154;239155	239146	648		10	
KVEKVVVSNR	2	Acetyl (K)	1198.7034	0.70337105	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.497								4	5	2	2	3	2	27.18	18.365	3	0.0043368	10971	160513_QHF_FH_JSI10Kac_6	67.153	49.344			0.96683	0.85989	51.656	7	0	Median	1.0822	0.9152	8.8145	2	0	Median	0.98372	1.156	0.51831	2	0	Median	0.35902	0.354	10.108	2	0	Median	0.6095	0.64216	NaN	1	0	Median	67522000	41666000	25856000	7950900	4191000	3759900	22654000	10582000	12072000	29998000	22655000	7343000	6919100	4238100	2681000	28437	880	26923	176880;176881;176882;176883;176884;176885;176886;176887;176888	239156;239157;239158;239159;239160;239161;239162;239163;239164	239164	615;616		9	
KVELPVPTHR	1	Unmodified	1174.6822	0.68224168	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			31.674	30.291	3	0.0347	24596	160511_QHF_FH_JSI9i_3	30.139	23.011			1.1767	1.1692	3.6816	2	1	Median	1.4229	1.2	NaN	1	1	Median	0.97314	1.1391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59945000	23929000	36016000	34439000	12567000	21872000	25506000	11362000	14144000	0	0	0	0	0	0	28438	4545	26924	176889;176890	239165;239166	239166			2	
KVELSESEEDK	2	Unmodified	1291.6143	0.61434085	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	14.052	14.052	2;3	0.00016293	10901	160511_QHF_FH_JSI12i_3	77.597	65.731			1.1915	1.0841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1915	1.0841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39402000	20662000	18741000	0	0	0	0	0	0	39402000	20662000	18741000	0	0	0	28439	3463	26925	176891;176892;176893;176894	239167;239168;239169;239170	239170			4	
KVEMMNEK	2	Unmodified	1007.478	0.47798749	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	11.015	11.062	2	0.0005296	8310	160511_QHF_FH_JSI12i_3	105.52	61.713			0.22239	0.21438	208.04	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.052663	0.049237	NaN	1	1	Median	0.93917	0.9334	NaN	1	0	Median	204340000	117640000	86700000	0	0	0	0	0	0	49902000	41662000	8239600	154440000	75979000	78460000	28440	3947	26926	176895;176896	239171;239172;239173	239173			3	
KVENEDMNK	2	Unmodified	1105.5074	0.50737336	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.706	6	8	3							2	4	5	6	5.7063	5.4455	2;3	4.3463E-07	3457	160511_QHF_FH_JSI10i_2	138.98	106.13			0.85133	0.92475	33.438	16	0	Median	1.1733	1.0061	0.15927	2	0	Median	0.72208	0.88908	29.603	4	0	Median	0.96404	0.95711	30.143	5	0	Median	0.67656	0.74738	41.542	5	0	Median	2402400000	1314000000	1088400000	386690000	168510000	218180000	597490000	392340000	205150000	724940000	343520000	381420000	693280000	409650000	283630000	28441	2603	26927	176897;176898;176899;176900;176901;176902;176903;176904;176905;176906;176907;176908;176909;176910;176911;176912;176913	239174;239175;239176;239177;239178;239179;239180;239181;239182;239183;239184;239185;239186;239187;239188	239185			15	
KVEPVPVTK	2	Unmodified	995.60153	0.60153174	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.34		2	4					1		1	1	3	2	17.86	16.307	2;3	0.00088072	13003	160511_QHF_FH_JSI12i_3	72.643	53.912			0.93933	0.88955	32.564	7	1	Median	1.3371	1.1309	NaN	1	0	Median	1.4152	1.7297	NaN	1	1	Median	0.98743	0.93309	9.9637	3	0	Plateau	0.66468	0.68875	6.5997	2	0	Median	1583900000	863450000	720450000	71596000	32482000	39114000	58351000	32952000	25398000	475920000	252820000	223100000	978040000	545190000	432840000	28442	3328	26928	176914;176915;176916;176917;176918;176919;176920	239189;239190;239191;239192;239193;239194;239195	239194			7	
KVEPVTQK	2	Unmodified	927.53893	0.53893149	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	6.1898	6.2535	2	0.0038838	3811	160511_QHF_FH_JSI12i_3	79.906	38.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28443	339	26929	176921;176922;176923	239196;239197;239198	239197			3	
KVEQDTETK	2	Unmodified	1076.535	0.53496832	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2	0.632	2	6	2							1		4	5	4.6059	4.2899	2;3	6.5392E-09	2177	160511_QHF_FH_JSI11i_2	153.97	104.53			0.9732	0.90082	36.647	9	4	Median	1.0655	0.90082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86012	0.87064	13.221	3	0	Median	0.9732	1.0882	50.944	5	4	Median	1641300000	884250000	757030000	215170000	86744000	128430000	0	0	0	709250000	387740000	321510000	716860000	409770000	307090000	28444	5153	26930	176924;176925;176926;176927;176928;176929;176930;176931;176932;176933	239199;239200;239201;239202;239203;239204;239205;239206	239203			8	
KVEQLQQEYTEMK	2	Unmodified	1652.808	0.80797206	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.442		11	4							2	4	3	6	35.456	34.712	2;3	1.9089E-05	30290	160511_QHF_FH_JSI9i_2	134.2	109.34			0.85027	0.86223	61.601	14	14	Median	1.008	0.86223	8.6436	2	2	Median	0.58588	0.72116	42.728	4	4	Median	1.2963	1.1699	91.527	3	3	Median	0.5203	0.58933	78.161	5	5	Median	903000000	469950000	433050000	66133000	28574000	37558000	273200000	166200000	107000000	107930000	52568000	55360000	455740000	222610000	233130000	28445	2525	26931	176934;176935;176936;176937;176938;176939;176940;176941;176942;176943;176944;176945;176946;176947;176948	239207;239208;239209;239210;239211;239212;239213;239214;239215;239216;239217;239218;239219;239220;239221	239212			15	
KVEQLSR	1	Unmodified	858.49232	0.49231565	1123	P17676	CEBPB	CCAAT/enhancer-binding protein beta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			7.1089	6.5881	3	0.026913	4532	160511_QHF_FH_JSI10i_3	29.162	0			0.78444	0.93409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78444	0.93409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55223000	31543000	23679000	0	0	0	55223000	31543000	23679000	0	0	0	0	0	0	28446	1123	26932	176949	239222	239222			1	
KVEQPVIEEPALK	2	Unmodified	1478.8344	0.83444481	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	2.33	0.471		2	1								1	1	1	44.637	44.072	3	9.314E-05	37563	160511_QHF_FH_JSI12i_3	70.889	58.969			1.0882	1.0838	21.728	3	0	Median	NaN	NaN	NaN	0	0	Median	1.22	1.4853	NaN	1	0	Median	1.0882	1.0838	NaN	1	0	Median	0.96458	0.97916	NaN	1	0	Median	186810000	97177000	89630000	0	0	0	35887000	15552000	20334000	31825000	18060000	13764000	119100000	63565000	55531000	28447	2784	26933	176950;176951;176952	239223	239223			1	
KVEQTIQYNSELEQK	2	Unmodified	1835.9265	0.92650729	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.733	33.733	3	0.0025785	29388	160511_QHF_FH_JSI11i_3	48.423	41.695			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28448	3423	26934	176953	239224	239224			1	
KVESLQEEIAFLK	2	Unmodified	1532.845	0.84500949	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	72.919	72.187	2;3	9.921E-06	63320	160511_QHF_FH_JSI11i_2	99.844	69.361			0.90081	0.95282	10.928	10	0	Median	1.0024	0.85657	12.912	2	0	Median	0.82668	1.0159	6.9197	2	0	Median	0.83151	0.77395	15.044	3	0	Plateau	0.95651	0.98323	6.977	3	0	Plateau	1197700000	584960000	612730000	149120000	60288000	88831000	260640000	156840000	103800000	294610000	142900000	151710000	493310000	224920000	268390000	28449	913	26935	176954;176955;176956;176957;176958;176959;176960;176961;176962;176963	239225;239226;239227;239228;239229;239230;239231;239232;239233;239234;239235;239236;239237	239232			13	
KVESTGAVPEFK	2	Unmodified	1290.682	0.68196691	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	3.8		5	4					1		3	2	2	3	32.003	30.471	2;3	8.9939E-05	25406	160511_QHF_FH_JSI12i_3	91.937	64.608			1.2143	1.1636	27.476	10	3	Median	1.3803	1.1698	27.24	3	2	Plateau	0.89171	1.1079	37.293	2	1	Median	1.3105	1.2171	7.1156	2	0	Median	0.80033	0.81388	6.6419	3	0	Plateau	917610000	484360000	433250000	118830000	59611000	59218000	108700000	59295000	49400000	263720000	136850000	126870000	426360000	228610000	197760000	28450	3175	26936	176964;176965;176966;176967;176968;176969;176970;176971;176972;176973	239238;239239;239240;239241;239242;239243;239244;239245;239246;239247;239248;239249	239246			12	
KVESTGAVPEFKEEK	3	Unmodified	1676.8621	0.86211612	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		26.593	26.593	3;4	0.01143	22787	160511_QHF_FH_JSI11i_3	52.172	34.472			0.72767	0.68451	4.7588	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72767	0.68451	4.7588	2	1	Median	NaN	NaN	NaN	0	0	Median	177590000	83180000	94408000	0	0	0	0	0	0	177590000	83180000	94408000	0	0	0	28451	3175	26937	176974;176975	239250;239251	239251			2	
KVETDHIVAAVGLEPNVELAK	2	Unmodified	2231.2161	0.21614737	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	1	2	3	69.425	69.059	2;3;4	2.504E-15	61469	160511_QHF_FH_JSI11i_3	99.059	95.108			0.9478	0.90512	15.326	7	1	Median	1.4698	1.21	NaN	1	1	Median	0.67487	0.8465	NaN	1	0	Median	0.94338	0.87665	4.52	2	0	Median	0.96328	0.9801	15.649	3	0	Plateau	1098200000	625340000	472850000	26018000	9025900	16992000	41305000	22990000	18315000	303960000	169370000	134590000	726910000	423950000	302950000	28452	736	26938	176976;176977;176978;176979;176980;176981;176982;176983	239252;239253;239254;239255;239256;239257;239258;239259;239260;239261;239262;239263;239264;239265;239266	239254			15	
KVETLMVPSK	2	Unmodified	1130.6369	0.63693097	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							1	1		3	31.758	31.463	2;3	4.4742E-05	26401	160511_QHF_FH_JSI12i_3	107.06	65.607			0.80643	0.89082	125.66	4	3	Median	NaN	NaN	NaN	0	0	Median	0.72844	0.8836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89278	0.8981	153.9	3	2	Median	384540000	182160000	202380000	0	0	0	62715000	32848000	29867000	0	0	0	321830000	149310000	172510000	28453	3328	26939	176984;176985;176986;176987;176988	239267;239268;239269;239270;239271;239272;239273;239274;239275;239276	239274			10	
KVETLMVPSK	2	Oxidation (M)	1146.6318	0.63184559	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	26.681	26.643	3	0.0016996	22181	160511_QHF_FH_JSI12i_3	61.344	46.664			0.38677	0.39	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38677	0.39	NaN	1	1	Median	41904000	26329000	15575000	0	0	0	0	0	0	0	0	0	41904000	26329000	15575000	28454	3328	26939	176989	239277	239277		2245	1	
KVEYLYSLVYQALDFISGK	2	Unmodified	2235.1827	0.18272198	3054	Q6IBW4	NCAPH2	Condensin-2 complex subunit H2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			100.7	93.252	3	1.1185E-09	52995	160513_QHF_FH_JSI9Kac_6	112.55	101.68			0.9476	0.9316	81.498	2	1	Median	0.62252	0.52355	NaN	1	0	Median	1.4424	1.6577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246270000	105690000	140580000	58801000	25073000	33729000	187470000	80617000	106850000	0	0	0	0	0	0	28455	3054	26940	176990;176991	239278;239279;239280	239278			3	
KVFDPVPVGVTK	2	Acetyl (K)	1326.7547	0.75473792	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	75.485	64.789	2	0.0075188	34907	160513_QHF_FH_JSI11Kac_4	80.763	44.82			0.2434	0.23921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2434	0.23921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10106000	8295100	1810900	0	0	0	0	0	0	9147600	7336700	1810900	958420	958420	0	28456	2265	26941	176992;176993	239281;239282	239281	2364		2	
KVFIEDVSR	1	Unmodified	1091.5975	0.597509	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		31.576	30.535	2;3	0.013699	25427	160511_QHF_FH_JSI10i_3	46.462	33.425			0.71523	0.80269	10.862	4	0	Median	0.97859	0.80831	NaN	1	0	Median	0.71523	0.82449	4.7761	2	0	Median	0.68313	0.66439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	211930000	124670000	87256000	46663000	17570000	29093000	102110000	67962000	34146000	63160000	39142000	24018000	0	0	0	28457	779	26942	176994;176995;176996;176997	239283;239284;239285	239283			2	
KVGDDIAK	2	Unmodified	844.46543	0.46543219	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.82	5	11	7				6	5		6	10	11	7	10.301	7.4162	2;3	0.0026163	4894	160513_QHF_FH_JSI11Kac_5	56.258	13.659			0.79711	0.86106	58.146	33	15	Median	2.8893	2.3693	69.006	5	4	Median	0.76677	0.90015	58.562	10	6	Median	0.80503	0.78146	52.479	11	4	Median	0.68263	0.76046	32.633	7	1	Median	23928000000	11645000000	12283000000	3370900000	1488700000	1882200000	6060400000	2987000000	3073400000	6937100000	3276700000	3660500000	7560000000	3893100000	3666900000	28458	1340	26943	176998;176999;177000;177001;177002;177003;177004;177005;177006;177007;177008;177009;177010;177011;177012;177013;177014;177015;177016;177017;177018;177019;177020;177021;177022;177023;177024;177025;177026;177027;177028;177029;177030;177031	239286;239287;239288;239289;239290;239291;239292;239293;239294;239295;239296;239297;239298;239299;239300;239301;239302;239303;239304;239305;239306;239307;239308;239309;239310;239311;239312;239313;239314;239315;239316;239317;239318;239319;239320;239321;239322;239323;239324;239325	239316			37	
KVGFEVEK	2	Unmodified	934.51238	0.51238239	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	21.713	20.967	2;3	0.008081	17599	160511_QHF_FH_JSI11i_3	57.96	8.5419			1.5321	1.2444	57.552	5	2	Median	1.5321	1.2444	NaN	1	0	Median	2.0344	2.3575	11.572	2	2	Median	0.86027	0.82049	NaN	1	0	Median	0.67868	0.69621	NaN	1	0	Median	856890000	417050000	439840000	26630000	10516000	16114000	193150000	73316000	119830000	247180000	109440000	137750000	389930000	223780000	166150000	28459	5227	26944	177032;177033;177034;177035;177036	239326;239327;239328;239329	239326			4	
KVGFNPK	2	Unmodified	788.45447	0.45447358	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		10.885	10.436	2	0.016943	7922	160511_QHF_FH_JSI9i_3	62.715	44.867			0.84397	1.2095	22.846	3	0	Plateau	1.6363	1.2878	NaN	1	0	Median	0.82738	0.94599	NaN	1	0	Median	0.84397	0.82433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2540800000	1155000000	1385800000	1124200000	483180000	640980000	869920000	466540000	403370000	546740000	205290000	341440000	0	0	0	28460	1069	26945	177037;177038;177039	239330	239330			1	
KVGISQENKK	3	Unmodified	1129.6455	0.64552182	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			5.5987	5.1024	3	0.0082365	3124	160511_QHF_FH_JSI9i_3	49.632	28.125			0.25771	0.30183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25771	0.30183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	267940000	190990000	76952000	0	0	0	267940000	190990000	76952000	0	0	0	0	0	0	28461	4610	26946	177040;177041	239331;239332	239332			2	
KVGIVGK	2	Unmodified	699.46431	0.46430998	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.802	10.896	2	0.054209	8134	160511_QHF_FH_JSI12i_3	54.787	24.98			2.3807	2.4135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3807	2.4135	NaN	1	1	Median	3864400000	2101600000	1762800000	0	0	0	0	0	0	0	0	0	3864400000	2101600000	1762800000	28462	1956	26947	177042	239333	239333			1	
KVGLYTIYVNPANTHQFAVGGR	1	Unmodified	2404.2652	0.26516325	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			73.432	66.06	3	2.6028E-08	36349	160513_QHF_FH_JSI10Kac_6	133.98	119.36			2.0448	2.4287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0448	2.4287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44062000	8087400	35975000	0	0	0	44062000	8087400	35975000	0	0	0	0	0	0	28463	2962	26948	177043	239334	239334			1	
KVGTFFSEVK	2	Unmodified	1140.6179	0.61791009	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	41.824	40.938	3	0.0026373	33696	160511_QHF_FH_JSI9i_3	55.353	43.139			0.40657	0.37048	33.114	2	1	Median	0.35537	0.29314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46516	0.46822	NaN	1	0	Median	100190000	73054000	27137000	21061000	15122000	5939700	0	0	0	0	0	0	79130000	57932000	21198000	28464	1837	26949	177044;177045	239335;239336	239335			1	
KVGYTPDWIFLLR	1	Unmodified	1606.8871	0.88714908	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			100.03	99.833	2;3	0.0027373	80954	160511_QHF_FH_JSI9i_3	47.242	35.077			0.76946	0.73607	7.9653	3	1	Plateau	0.8915	0.73607	NaN	1	0	Median	0.7198	0.80023	8.9621	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120930000	67594000	53341000	69442000	35067000	34374000	51493000	32527000	18966000	0	0	0	0	0	0	28465	1807;2155	26950	177046;177047;177048	239337;239338;239339	239339			3	
KVHVIFNYK	2	Unmodified	1146.655	0.6549643	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	3	3	1	3	39.836	33.682	3	0.00056197	18440	160513_QHF_FH_JSI9Kac_6	66.621	58.976			0.70231	0.72526	57.689	8	1	Median	0.57539	0.47218	24.331	2	0	Median	0.60079	0.70324	13.748	2	0	Median	0.7046	0.67868	NaN	1	0	Median	2.0358	2.2223	50.909	3	1	Plateau	492730000	265120000	227610000	189550000	115500000	74051000	150760000	82248000	68517000	16904000	7871000	9033000	135510000	59496000	76013000	28466	1297	26951	177049;177050;177051;177052;177053;177054;177055;177056;177057;177058	239340;239341;239342;239343;239344;239345;239346;239347;239348;239349;239350;239351;239352;239353;239354;239355	239348			16	
KVHVIFNYK	2	Acetyl (K)	1188.6655	0.66552898	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		55.008	45.28	2	0.0036123	24482	160513_QHF_FH_JSI11Kac_6	84.498	52.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3114700	3114700	0	0	0	0	0	0	0	3114700	3114700	0	0	0	0	28467	1297	26951	177059	239356	239356	1226;1227		1	
KVIAAMTVGK	2	Unmodified	1016.6052	0.60523691	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			26.32	25.027	2;3	0.0024755	20698	160511_QHF_FH_JSI10i_3	77.533	36.104			0.32306	0.37423	23.783	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32306	0.37423	23.783	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80497000	53453000	27045000	0	0	0	80497000	53453000	27045000	0	0	0	0	0	0	28468	2046	26952	177060;177061	239357;239358	239357			2	
KVIASMTVGK	2	Unmodified	1032.6002	0.60015154	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	23.281	22.616	2	0.0036856	18546	160511_QHF_FH_JSI12i_3	56.258	0			1.5773	1.4657	73.658	2	0	Median	2.9872	2.4673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8329	0.87063	NaN	1	0	Median	77021000	34834000	42187000	28073000	8322100	19751000	0	0	0	0	0	0	48949000	26512000	22436000	28469	2296	26953	177062;177063	239359;239360;239361	239360			3	
KVIDDTNITR	1	Unmodified	1173.6354	0.63535107	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	2	2	19.5	19.017	2;3	0.0053331	15432	160511_QHF_FH_JSI12i_3	44.543	24.336			1.258	1.3388	23.316	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0658	1.2403	22.783	2	0	Median	1.9586	1.8177	NaN	1	1	Median	1.1947	1.2302	NaN	1	0	Median	284780000	114910000	169870000	0	0	0	71669000	38025000	33644000	148360000	45667000	102700000	64744000	31214000	33530000	28470	842	26954	177064;177065;177066;177067;177068;177069;177070;177071	239362;239363;239364;239365;239366;239367;239368;239369;239370	239370			7	
KVIDPVAPR	1	Unmodified	993.59712	0.59711507	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	22.121	21.489	2;3	1.7312E-05	17512	160511_QHF_FH_JSI12i_3	85.731	82.03			0.88883	0.86253	4.9257	8	0	Median	1.0769	0.87468	0.86921	2	0	Median	0.7081	0.81531	8.4275	2	0	Median	0.89233	0.85666	0.49949	2	0	Median	0.84261	0.83283	6.3609	2	0	Median	2333800000	1329200000	1004600000	334950000	172070000	162870000	370410000	245370000	125040000	1062600000	574990000	487630000	565810000	336730000	229080000	28471	878	26955	177072;177073;177074;177075;177076;177077;177078;177079	239371;239372;239373;239374;239375;239376;239377;239378;239379;239380	239380			10	
KVIDPVAPR	1	Acetyl (K)	1035.6077	0.60767975	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	48.963	38.588	2	0.019495	22216	160513_QHF_FH_JSI12Kac_4	66.692	34.757			0.27568	0.29454	55.298	3	3	Median	NaN	NaN	NaN	0	0	Median	0.28492	0.33868	NaN	1	1	Median	0.12205	0.12213	NaN	1	1	Median	0.27568	0.29454	NaN	1	1	Median	12698000	10344000	2354300	0	0	0	4155100	3192400	962730	5153800	4337700	816100	3389300	2813900	575440	28472	878	26955	177080;177081;177082	239381;239382;239383	239383	590		3	
KVIEEEQR	1	Unmodified	1029.5455	0.54547343	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		6.2524	6.2524	2	0.014628	4022	160511_QHF_FH_JSI11i_3	57.59	29.371			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28473	2535	26956	177083	239384	239384			1	
KVIEYFK	2	Unmodified	925.5273	0.52730417	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	28.633	27.921	3	0.019554	23294	160511_QHF_FH_JSI12i_3	40.268	24.636			2.085	1.8907	83.286	2	2	Median	4.1556	3.4071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0461	1.0492	NaN	1	1	Median	119860000	48096000	71769000	28962000	6067600	22895000	0	0	0	0	0	0	90902000	42028000	48874000	28474	4416	26957	177084;177085	239385;239386	239386			2	
KVIQYLAYVASSHK	2	Unmodified	1605.8879	0.88787736	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			13.4	5.2			1						4	2	3			61.623	52.908	3	0.00013539	29017	160513_QHF_FH_JSI10Kac_6	96.464	73.008			1.0196	1.0226	69.979	4	4	Median	1.2859	1.098	84.595	2	2	Median	0.79513	0.94616	85.519	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	476110000	233680000	242430000	191540000	96662000	94876000	284570000	137020000	147550000	0	0	0	0	0	0	28475	1436	26958	177086;177087;177088;177089;177090	239387;239388;239389;239390;239391	239390			5	
KVITMFVQR	1	Unmodified	1120.6427	0.64268505	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	49.026	39.709	3	0.00029861	21770	160513_QHF_FH_JSI10Kac_6	80.755	67.163			0.9058	0.91464	9.6063	4	0	Median	1.1291	0.96212	NaN	1	0	Median	0.68494	0.80796	NaN	1	0	Median	0.89981	0.8695	NaN	1	0	Median	0.91182	0.99755	NaN	1	0	Median	64929000	33153000	31777000	17406000	6400600	11006000	36729000	20438000	16292000	5372300	3384300	1988000	5421500	2929900	2491700	28476	1024	26959	177091;177092;177093;177094	239392;239393;239394;239395;239396	239395			5	
KVITMFVQR	1	Oxidation (M)	1136.6376	0.63759967	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			36.43	27.875	3	0.037884	15713	160513_QHF_FH_JSI10Kac_6	36.424	22.655			0.71218	0.85278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71218	0.85278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3208900	1957400	1251500	0	0	0	3208900	1957400	1251500	0	0	0	0	0	0	28477	1024	26959	177095	239397	239397			1	
KVIVDFSSPNIAK	2	Unmodified	1416.7977	0.79766537	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	54.995	54.07	2;3	5.6216E-05	44302	160511_QHF_FH_JSI9i_3	60.345	54.069			1.0391	1.0175	10.021	7	0	Median	1.3786	1.132	3.3577	2	0	Median	0.8514	0.98126	16.728	2	0	Median	1.0599	1.0029	2.047	2	0	Median	0.94477	0.94706	NaN	1	0	Median	617330000	312830000	304500000	175150000	88616000	86537000	161450000	85993000	75461000	187460000	93412000	94046000	93261000	44805000	48455000	28478	1818	26960	177096;177097;177098;177099;177100;177101;177102	239398;239399;239400;239401;239402;239403;239404;239405;239406;239407	239405			9	
KVLGSSTSATNSTSVSSR	1	Acetyl (K)	1809.9068	0.90683448	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	35.461	26.42	2	1.0076E-15	15677	160513_QHF_FH_JSI12Kac_4	140.08	116.23			1.0426	1.0351	25.728	6	0	Median	NaN	NaN	NaN	0	0	Median	0.61741	0.72403	5.9961	2	0	Median	1.0734	1.0351	8.1981	2	0	Median	1.1573	1.2586	7.8451	2	0	Median	33982000	18813000	15169000	0	0	0	13039000	8792900	4245600	8423700	4105800	4317900	12520000	5914300	6605600	28479	2595	26961	177103;177104;177105;177106;177107;177108	239408;239409;239410;239411;239412;239413;239414;239415	239413	2571		8	
KVMDDLDR	1	Unmodified	990.48043	0.48043033	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	1	2	14.747	14.411	2;3	0.0052024	11664	160511_QHF_FH_JSI11i_3	66.621	24.512			1.1237	1.0507	19.12	6	1	Median	1.3038	1.1101	7.5543	2	0	Median	0.59848	0.73518	NaN	1	0	Median	1.2109	1.1455	NaN	1	0	Median	0.91834	0.92415	17.924	2	1	Median	414860000	199880000	214970000	81713000	23504000	58209000	34629000	21572000	13057000	125120000	60818000	64298000	173400000	93987000	79411000	28480	1664	26962	177109;177110;177111;177112;177113;177114	239416;239417;239418;239419;239420;239421	239417			6	
KVNIDFEPFKPINTSLYLCDNK	3	Unmodified	2654.3414	0.34142424	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		89.904	89.904	4	1.0304E-05	80165	160511_QHF_FH_JSI11i_3	61.942	54.495			0.92042	0.8694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92042	0.8694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22602000	12140000	10462000	0	0	0	0	0	0	22602000	12140000	10462000	0	0	0	28481	2010	26963	177115	239422	239422			1	
KVNPYEEVDQEK	2	Unmodified	1476.7096	0.70963822	4364	Q9BQP7	MGME1	Mitochondrial genome maintenance exonuclease 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.488	23.47	2	0.0031199	19380	160511_QHF_FH_JSI12i_3	62.303	36.364			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28482	4364	26964	177116	239423	239423			1	
KVNQQPNTSDK	2	Unmodified	1257.6313	0.63132832	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	3	1		5.0719	4.6962	2;3	8.0437E-13	2686	160511_QHF_FH_JSI11i_3	141.95	110.72			0.84901	0.9915	16.141	6	0	Median	1.4466	1.2165	8.1951	2	0	Median	0.82051	0.98924	4.3284	3	0	Median	0.85993	0.81683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	430130000	222700000	207430000	82449000	36554000	45895000	240130000	132910000	107220000	107550000	53236000	54312000	0	0	0	28483	1824	26965	177117;177118;177119;177120;177121;177122;177123	239424;239425;239426;239427;239428;239429;239430;239431;239432;239433;239434	239424			11	
KVNQQPNTSDKK	3	Unmodified	1385.7263	0.72629134	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		4.6304	4.3049	3	2.4949E-05	2151	160511_QHF_FH_JSI9i_3	111.52	94.157			0.92419	0.81552	43.982	3	0	Plateau	1.3698	1.1283	NaN	1	0	Median	0.4179	0.48782	NaN	1	0	Median	0.62355	0.58942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	808670000	447640000	361030000	295070000	128020000	167050000	231290000	139330000	91959000	282310000	180280000	102020000	0	0	0	28484	1824	26966	177124;177125;177126;177127	239435;239436;239437;239438;239439	239438			5	
KVPAESMPTLTPAFPR	1	Unmodified	1740.9233	0.92327659	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			67.582	66.092	3	0.00024226	54131	160511_QHF_FH_JSI9i_3	58.814	47.443			0.92151	0.89821	15.381	2	0	Median	0.98836	0.80565	NaN	1	0	Median	0.85918	1.0014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70953000	42019000	28934000	37944000	21619000	16326000	33009000	20400000	12608000	0	0	0	0	0	0	28485	3239	26967	177128;177129	239440	239440			1	
KVPAITLTANIIWFPDNFLIQK	2	Unmodified	2541.4359	0.43591697	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		97.494	88.088	3	0.00023062	50291	160513_QHF_FH_JSI11Kac_6	98.543	91.665			1.3362	1.338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3362	1.338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36920000	18672000	18247000	0	0	0	0	0	0	36920000	18672000	18247000	0	0	0	28486	2793	26968	177130	239441	239441			1	
KVPEFQFLIGDEAATHLK	2	Unmodified	2042.0837	0.083676635	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	80.719	80.606	4	0.0037192	70021	160511_QHF_FH_JSI12i_3	47.088	31.146			0.96978	0.94671	3.243	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97599	0.92525	NaN	1	1	Median	0.96361	0.96867	NaN	1	1	Median	98235000	52844000	45391000	0	0	0	0	0	0	41712000	22501000	19211000	56523000	30343000	26180000	28487	1418	26969	177131;177132	239442;239443	239443			2	
KVPELMEMFLPATK	2	Unmodified	1632.8619	0.86192189	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	98.654	98.565	2;3	2.8913E-05	84878	160511_QHF_FH_JSI12i_3	103.39	86.643			0.7977	0.90563	49.173	9	3	Median	1.8644	1.5962	65.775	2	0	Median	0.74314	0.85553	11.408	2	1	Median	0.93507	0.86375	21.094	2	1	Median	0.51716	0.53605	37.492	3	1	Median	242470000	128150000	114320000	14570000	5080000	9489900	24407000	14302000	10105000	70370000	37294000	33076000	133120000	71475000	61647000	28488	369	26970	177133;177134;177135;177136;177137;177138;177139;177140;177141	239444;239445;239446;239447;239448;239449;239450;239451;239452;239453;239454;239455;239456;239457;239458	239455			15	
KVPEPDNKK	3	Unmodified	1053.5819	0.58185893	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			5.9099	5.4136	3	0.043189	3487	160511_QHF_FH_JSI10i_3	39.148	28.839			0.77971	0.91112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77971	0.91112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	226860000	123470000	103390000	0	0	0	226860000	123470000	103390000	0	0	0	0	0	0	28489	998	26971	177142	239459	239459			1	
KVPGEGLPLPK	2	Unmodified	1133.6808	0.6808447	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	1	1	4	44.633	43.852	2;3	0.0094245	38272	160511_QHF_FH_JSI9i_2	38.021	19.753			1.2517	1.2606	23.175	6	3	Median	1.2489	1.063	40.047	2	1	Median	0.75098	0.88104	NaN	1	0	Median	1.342	1.2658	NaN	1	0	Median	1.2517	1.2662	1.1949	2	2	Median	1036300000	435670000	600590000	114480000	48686000	65790000	188910000	92807000	96103000	276780000	107910000	168870000	456100000	186270000	269830000	28490	1262	26972	177143;177144;177145;177146;177147;177148;177149;177150	239460;239461;239462;239463;239464;239465;239466;239467;239468;239469	239464			10	
KVPGVTAIELDEDTGTFR	1	Unmodified	1946.9949	0.99492121	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	3	1	68.235	67.431	2;3	3.4431E-16	59893	160511_QHF_FH_JSI11i_3	160.48	144.34			0.89978	0.89027	57.99	8	3	Median	1.2673	1.0654	48.877	2	1	Median	0.76961	0.88156	7.453	3	0	Median	1.1181	1.0546	27.687	2	1	Median	4.1839	4.2915	NaN	1	1	Median	1095900000	421140000	674750000	154210000	50003000	104200000	214830000	124330000	90499000	546260000	216310000	329960000	180590000	30497000	150090000	28491	1725	26973	177151;177152;177153;177154;177155;177156;177157;177158;177159;177160	239470;239471;239472;239473;239474;239475;239476;239477;239478;239479;239480;239481	239471			12	
KVPILVAQEGESSQQLNDSSVIISALK	2	Unmodified	2852.5495	0.54950276	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		92.91	92.228	3	8.7852E-26	81918	160511_QHF_FH_JSI11i_3	131.04	128.66			0.82726	0.78835	59.144	3	0	Median	1.9643	1.6492	NaN	1	0	Median	0.43905	0.51209	NaN	1	0	Median	0.82726	0.78835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76121000	42639000	33482000	15281000	4516900	10764000	18219000	13560000	4658600	42621000	24562000	18059000	0	0	0	28492	4773	26974	177161;177162;177163	239482;239483;239484;239485;239486;239487;239488;239489;239490	239482			9	
KVPLDER	1	Unmodified	855.48142	0.48141661	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	11.731	11.776	2	0.042558	9287	160511_QHF_FH_JSI11i_3	58.981	44.568			0.69491	0.68948	72.113	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42725	0.41406	NaN	1	1	Median	1.1303	1.1481	NaN	1	1	Median	566320000	418710000	147600000	0	0	0	0	0	0	490960000	377120000	113830000	75358000	41590000	33768000	28493	4260	26975	177164;177165	239491;239492	239491			2	
KVPLQEGPK	2	Unmodified	994.58113	0.58113065	2228	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	15.37	14.889	2;3	0.0011672	11543	160511_QHF_FH_JSI12i_3	56.432	48.865			0.79702	0.82665	12.054	8	0	Median	0.95309	0.79929	7.3332	2	0	Median	0.71751	0.8328	3.6208	2	0	Median	0.69518	0.66119	1.084	2	0	Median	0.87183	0.87874	5.5273	2	0	Median	332250000	198000000	134250000	32846000	18474000	14372000	54428000	31657000	22771000	90437000	61841000	28596000	154540000	86027000	68511000	28494	2228	26976	177166;177167;177168;177169;177170;177171;177172;177173	239493;239494;239495;239496;239497	239497			5	
KVPQVSTPTLVEVSR	1	Unmodified	1638.9305	0.93047046	50	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		55.941	54.696	2;3	3.8615E-05	45897	160511_QHF_FH_JSI10i_3	93.51	89.119		+	0.73952	0.86698	31.052	5	1	Median	1.3188	1.0628	4.2917	2	0	Median	0.73801	0.85388	2.1541	2	0	Median	0.53602	0.49852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	463680000	244430000	219250000	177420000	72367000	105050000	183820000	110770000	73055000	102430000	61297000	41137000	0	0	0	28495	50	26977	177174;177175;177176;177177;177178	239498;239499;239500;239501;239502;239503;239504;239505	239501			8	
KVPSEASFSDVHLEEGESNSLTK	2	Unmodified	2489.1922	0.19217704	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		54.806	54.806	3	0.0085059	48578	160511_QHF_FH_JSI11i_3	32.548	24.555			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28496	4135	26978	177179	239506	239506			1	
KVPVPIGTER	1	Unmodified	1094.6448	0.64479354	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			31.661	30.3	3	0.055604	25251	160511_QHF_FH_JSI10i_3	22.562	16.241			0.62965	0.7322	24.017	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62965	0.7322	24.017	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37584000	21224000	16360000	0	0	0	37584000	21224000	16360000	0	0	0	0	0	0	28497	489	26979	177180;177181	239507;239508	239508			2	
KVPVSVNLLSK	2	Unmodified	1182.7336	0.73360855	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	53.732	52.891	2;3	1.4902E-06	45113	160511_QHF_FH_JSI12i_3	113.61	90.491			0.54232	0.56997	10.627	8	8	Median	0.71537	0.58851	2.2022	2	2	Median	0.47784	0.55786	4.9419	2	2	Median	0.63682	0.60154	9.5293	2	2	Median	0.46265	0.47603	0.90166	2	2	Median	2682800000	1425700000	1257000000	665480000	278330000	387150000	466560000	290520000	176040000	557660000	288650000	269020000	993070000	568240000	424820000	28498	596	26980	177182;177183;177184;177185;177186;177187;177188;177189	239509;239510;239511;239512;239513;239514;239515;239516;239517	239516			9	
KVPYLASSPSTSDGGTDSPGTASPSPTK	2	Unmodified	2691.2875	0.28753399	5652	Q9Y597	KCTD3	BTB/POZ domain-containing protein KCTD3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			45.058	43.473	3	0.00030728	35527	160511_QHF_FH_JSI9i_3	44.596	41.068			0.84359	0.76642	14.894	3	3	Median	0.97434	0.82257	20.257	2	2	Median	0.62916	0.76642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27950000	17288000	10662000	21310000	12270000	9039400	6640500	5017700	1622800	0	0	0	0	0	0	28499	5652	26981	177190;177191;177192	239518;239519;239520;239521	239520			4	
KVQAAQSEAK	2	Unmodified	1058.572	0.57202253	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	5.71		3	6					4		3	5	2	3	4.7765	2.2066	2;3	2.6514E-09	2345	160511_QHF_FH_JSI11i_3	128.03	75.319			0.89141	0.89514	41.794	11	2	Median	1.9357	1.5934	19.506	2	0	Median	0.77586	0.88764	42.846	4	1	Median	0.92964	0.90803	6.2274	2	0	Median	0.7001	0.77034	38.658	3	1	Median	2630500000	1415400000	1215100000	324410000	116440000	207980000	1415800000	805470000	610340000	533480000	312040000	221440000	356820000	181460000	175360000	28500	2780	26982	177193;177194;177195;177196;177197;177198;177199;177200;177201;177202;177203;177204;177205	239522;239523;239524;239525;239526;239527;239528;239529;239530;239531;239532;239533	239523			12	
KVQEAVLDK	2	Unmodified	1028.5866	0.58660996	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	14.865	14.896	2	0.0026154	11670	160511_QHF_FH_JSI12i_3	64.103	19.35			0.94119	0.91562	11.644	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0588	0.99419	NaN	1	0	Median	0.83663	0.84325	NaN	1	0	Median	284150000	134230000	149920000	0	0	0	0	0	0	120630000	54763000	65870000	163520000	79471000	84048000	28501	4717	26983	177206;177207	239534;239535;239536	239536			3	
KVQELQK	2	Unmodified	871.51272	0.51271674	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.5713	6.669	2	0.047568	4279	160511_QHF_FH_JSI12i_3	57.177	19.45			0.44266	0.4717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44266	0.4717	NaN	1	1	Median	48251000	29657000	18594000	0	0	0	0	0	0	0	0	0	48251000	29657000	18594000	28502	141	26984	177208	239537	239537			1	
KVQFGNENTK	2	Unmodified	1163.5935	0.59348625	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				11.516	10.805	2	0.0078337	8226	160511_QHF_FH_JSI9i_3	66.621	52.415			2.103	1.6726	NaN	1	1	Median	2.103	1.6726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50102000	10839000	39263000	50102000	10839000	39263000	0	0	0	0	0	0	0	0	0	28503	2956	26985	177209	239538	239538			1	
KVQGGALEDSQLVAGVAFK	2	Unmodified	1916.0367	0.036726442	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	3	3	2	67.79	67.243	2;3	7.7303E-18	58091	160511_QHF_FH_JSI12i_3	158.81	150.3			0.9617	0.88198	21.136	8	0	Median	1.0116	0.85027	NaN	1	0	Median	0.70905	0.8427	9.3324	2	0	Median	1.1698	1.1222	26.917	3	0	Median	0.88937	0.89587	15.146	2	0	Median	1499200000	808180000	691040000	69928000	30516000	39411000	235020000	130960000	104060000	395070000	193800000	201270000	799200000	452900000	346300000	28504	4321	26986	177210;177211;177212;177213;177214;177215;177216;177217;177218	239539;239540;239541;239542;239543;239544;239545;239546;239547;239548;239549	239549			10	
KVQGGALEDSQLVAGVAFKK	3	Unmodified	2044.1317	0.13168946	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	60.809	59.903	3;4	8.8151E-17	50219	160511_QHF_FH_JSI10i_3	121.27	116.83			0.90695	0.74396	33.578	7	2	Median	0.97733	0.78415	11.2	2	0	Median	0.55645	0.64074	21.124	2	1	Median	0.92093	0.86498	0.073023	2	0	Median	0.33641	0.34614	NaN	1	1	Median	545430000	307070000	238370000	246210000	133780000	112430000	125330000	68879000	56454000	123740000	65162000	58576000	50146000	39244000	10902000	28505	4321	26987	177219;177220;177221;177222;177223;177224;177225;177226	239550;239551;239552;239553;239554;239555;239556;239557;239558;239559;239560;239561;239562	239556			12	
KVQIFDLMDAK	2	Unmodified	1306.6955	0.69550848	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.072	69.261	3	0.00023336	59883	160511_QHF_FH_JSI12i_3	77.593	69.288			0.88454	0.91811	23.8	4	3	Median	1.3766	1.113	NaN	1	0	Median	0.83325	0.94927	NaN	1	1	Median	0.93898	0.88799	NaN	1	1	Median	0.63551	0.63258	NaN	1	1	Median	194350000	93227000	101130000	43916000	14343000	29573000	35717000	19774000	15943000	54063000	20848000	33215000	60656000	38262000	22394000	28506	3727	26988	177227;177228;177229;177230	239563;239564;239565;239566	239566			4	
KVQLTPGQTEVK	2	Unmodified	1326.7507	0.75071518	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	1		3	24.404	23.964	2;3	5.776E-05	19858	160511_QHF_FH_JSI10i_3	59.975	54.357			0.6169	0.63948	23.99	3	2	Median	NaN	NaN	NaN	0	0	Median	0.81113	0.92519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59587	0.61423	5.6969	2	2	Median	124720000	79430000	45289000	0	0	0	41166000	27957000	13209000	0	0	0	83553000	51473000	32081000	28507	2947	26989	177231;177232;177233;177234;177235	239567;239568;239569;239570;239571;239572	239568			6	
KVQSDGQIVLVDDWIK	2	Unmodified	1841.9887	0.98871362	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	77.738	77.561	2;3	8.3303E-05	67290	160511_QHF_FH_JSI12i_3	70.235	51.403			1.019	1.0553	6.8776	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0746	1.0081	NaN	1	0	Median	0.94294	0.9863	9.5611	2	1	Median	163430000	85749000	77685000	0	0	0	0	0	0	31226000	13219000	18006000	132210000	72529000	59678000	28508	2265	26990	177236;177237;177238	239573;239574;239575;239576;239577	239576			5	
KVQSGNINAAK	2	Unmodified	1128.6251	0.62512073	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		7.3296	6.9231	2;3	0.00036937	4899	160511_QHF_FH_JSI10i_3	73.499	53.713			1.2811	1.1272	83.644	4	1	Median	2.7825	2.2772	54.956	2	1	Median	0.42218	0.48148	NaN	1	0	Median	0.87082	0.82302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	312390000	120610000	191780000	222520000	59915000	162600000	48235000	34768000	13467000	41636000	25925000	15710000	0	0	0	28509	1655	26991	177239;177240;177241;177242	239578;239579;239580	239578			3	
KVQTEVLQK	2	Unmodified	1071.6288	0.62880913	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	4	2	1	15.573	14.966	2;3	5.1964E-05	12030	160511_QHF_FH_JSI11i_3	98.033	57.004			0.93843	1.0911	51.537	10	5	Median	2.4923	2.0835	76.031	3	3	Plateau	0.93843	1.0911	51.903	4	2	Median	1.0795	1.0281	39.222	2	0	Median	0.76159	0.77027	NaN	1	0	Median	2062700000	1005300000	1057400000	245290000	93731000	151560000	444170000	214270000	229900000	683080000	397040000	286040000	690190000	300260000	389920000	28510	4322	26992	177243;177244;177245;177246;177247;177248;177249;177250;177251;177252	239581;239582;239583;239584;239585;239586;239587;239588;239589;239590;239591;239592;239593	239582			13	
KVSAQEVR	1	Unmodified	915.51378	0.51377937	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		6.0552	5.6966	2	0.015539	3647	160511_QHF_FH_JSI10i_3	50.607	7.7376			0.91421	0.94464	13.373	4	0	Median	1.0483	0.87983	22.042	2	0	Median	0.82138	0.9416	NaN	1	0	Median	0.97315	0.9477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1655600000	828220000	827360000	545420000	247120000	298300000	593580000	329080000	264500000	516580000	252030000	264550000	0	0	0	28511	1073	26993	177253;177254;177255;177256	239594;239595;239596;239597	239595			4	
KVSAQEVRK	2	Unmodified	1043.6087	0.60874239	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		5.6551	5.6551	3	0.010597	3385	160511_QHF_FH_JSI11i_3	55.549	0.14886			0.6905	0.64334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6905	0.64334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	816620000	411690000	404940000	0	0	0	0	0	0	816620000	411690000	404940000	0	0	0	28512	1073	26994	177257	239598	239598			1	
KVSHVADTK	2	Unmodified	983.53999	0.53999412	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	1	2	3.4248	3.2681	2;3	4.7368E-07	2090	160511_QHF_FH_JSI9i_3	117.7	83.445			1.0698	1.2393	179.46	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.1672	8.475	2	2	Median	24.436	23.099	NaN	1	1	Median	0.62807	0.62665	194.86	2	2	Median	2146700000	1071000000	1075700000	0	0	0	1784900000	889110000	895740000	84363000	3694900	80668000	277490000	178200000	99298000	28513	5436	26995	177258;177259;177260;177261;177262;177263;177264;177265	239599;239600;239601;239602;239603;239604;239605;239606	239604			8	
KVSQPIEGHAASFAQFK	2	Unmodified	1843.9581	0.95808219	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	43.464	42.622	3	4.0814E-06	35118	160511_QHF_FH_JSI9i_3	95.205	85.8			0.4763	0.45131	61.059	4	1	Median	1.4502	1.1928	NaN	1	0	Median	0.27716	0.32026	NaN	1	0	Median	0.376	0.34163	NaN	1	0	Median	0.60337	0.59621	NaN	1	1	Median	176440000	96527000	79909000	67431000	21108000	46323000	41790000	29651000	12139000	39481000	27961000	11520000	27735000	17808000	9927600	28514	2155	26996	177266;177267;177268;177269;177270	239607;239608;239609;239610;239611;239612;239613	239611			7	
KVSQQILEK	2	Unmodified	1071.6288	0.62880913	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			18.397	17.278	2	0.025123	14096	160511_QHF_FH_JSI10i_3	56.258	16.954			0.89599	0.87904	9.0345	2	2	Median	1.0023	0.82464	NaN	1	1	Median	0.80092	0.93702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49462000	28176000	21286000	21380000	11216000	10163000	28083000	16960000	11123000	0	0	0	0	0	0	28515	4777	26997	177271;177272	239614;239615	239614			2	
KVSVSESNVLLDEEVLTDPK	2	Unmodified	2200.1475	0.14745868	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.599	52.016	4	0.061545	42539	160511_QHF_FH_JSI9i_3	13.037	3.7834			0.30396	0.24666	NaN	1	1	Median	0.30396	0.24666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23955000	21598000	2357100	23955000	21598000	2357100	0	0	0	0	0	0	0	0	0	28516	1193	26998	177273	239616	239616			1	
KVSYSHIQSK	2	Unmodified	1175.6299	0.62987176	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		8.3399	7.9591	2;3	1.2262E-05	5826	160511_QHF_FH_JSI10i_3	92.866	80.29			0.82264	0.85232	27.451	6	2	Median	1.3433	1.0891	18.659	2	1	Median	0.78602	0.91731	26.406	2	0	Median	0.70007	0.65342	4.3026	2	1	Median	NaN	NaN	NaN	0	0	Median	489980000	247010000	242960000	222420000	96820000	125600000	145400000	83965000	61440000	122150000	66227000	55922000	0	0	0	28517	1298	26999	177274;177275;177276;177277;177278;177279	239617;239618;239619;239620;239621;239622	239618			6	
KVSYVQLK	2	Unmodified	963.57532	0.57531699	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			24.015	22.727	2;3	0.0090825	18702	160511_QHF_FH_JSI10i_3	43.083	6.6878			1.1198	1.0722	110.12	2	0	Median	0.6012	0.49218	NaN	1	0	Median	2.0856	2.3358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61911000	27782000	34129000	39960000	21607000	18353000	21951000	6174600	15776000	0	0	0	0	0	0	28518	1085	27000	177280;177281;177282	239623;239624	239623			2	
KVTAAMGK	2	Unmodified	804.45276	0.45275902	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	6.7875	6.538	2;3	0.0060135	4390	160511_QHF_FH_JSI9i_3	51.066	31.43			1.2303	1.1305	131.3	3	1	Median	NaN	NaN	NaN	0	0	Median	0.13511	0.15181	NaN	1	1	Median	1.2303	1.1305	NaN	1	0	Median	1.7999	1.7942	NaN	1	0	Median	2235800000	870190000	1365600000	320470000	0	320470000	490950000	363300000	127650000	501360000	171200000	330170000	923030000	335690000	587340000	28519	1953	27001	177283;177284;177285;177286;177287;177288	239625;239626;239627;239628;239629;239630;239631;239632	239630			8	
KVTAAMGK	2	Oxidation (M)	820.44767	0.44767364	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				1.7719	1.3201	3	0.019593	669	160511_QHF_FH_JSI9i_3	39.305	25.147			4.6662	3.8155	NaN	1	1	Median	4.6662	3.8155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76344000	13649000	62695000	76344000	13649000	62695000	0	0	0	0	0	0	0	0	0	28520	1953	27001	177289	239633	239633		1624	1	
KVTAMQLYECQLIDK	2	Unmodified	1838.927	0.92704134	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		64.358	63.356	3	5.2343E-05	51961	160511_QHF_FH_JSI9i_3	86.378	75.719			0.94858	0.85833	3.966	3	0	Median	1.0703	0.85833	NaN	1	0	Median	0.679	0.82105	NaN	1	0	Median	0.94858	0.88865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	260660000	141150000	119510000	58220000	24500000	33720000	84444000	44440000	40004000	117990000	72205000	45787000	0	0	0	28521	1085	27002	177290;177291;177292	239634;239635;239636	239636			3	
KVTAQDVR	1	Unmodified	915.51378	0.51377937	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.43	2	5	8						2	6	7	2	2	6.4468	5.2824	2;3	0.00097428	3818	160511_QHF_FH_JSI11i_3	60.074	37.003			0.85732	0.90794	15.532	16	1	Median	1.1682	0.92934	12.972	5	1	Median	0.76711	0.89155	12.138	7	0	Median	0.78801	0.7611	16.609	2	0	Median	1.0511	1.0989	18.078	2	0	Median	9178600000	4405800000	4772900000	4029000000	1880600000	2148400000	3031900000	1638500000	1393400000	2007500000	845170000	1162300000	110180000	41465000	68717000	28522	1270	27003	177293;177294;177295;177296;177297;177298;177299;177300;177301;177302;177303;177304;177305;177306;177307;177308;177309	239637;239638;239639;239640;239641;239642;239643;239644;239645;239646;239647	239638			10	
KVTAQDVRK	2	Unmodified	1043.6087	0.60874239	1270	P26038	MSN	Moesin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		5.8686	5.359	3	0.00057589	3371	160511_QHF_FH_JSI11i_3	81.017	14.325			0.61392	0.58656	7.2289	2	0	Median	0.77258	0.61732	NaN	1	0	Median	0.48784	0.55733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1219100000	664100000	554960000	595340000	279410000	315930000	623720000	384690000	239040000	0	0	0	0	0	0	28523	1270	27004	177310;177311;177312	239648;239649;239650;239651	239648			4	
KVTEDALIR	1	Unmodified	1043.5975	0.597509	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	22.574	22.57	2	0.0082968	18605	160511_QHF_FH_JSI12i_3	52.579	14.275			1.3021	1.2408	59.275	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0681	1.8869	NaN	1	1	Median	0.81983	0.81599	NaN	1	0	Median	99857000	54530000	45327000	0	0	0	0	0	0	39248000	15060000	24188000	60609000	39470000	21139000	28524	3064	27005	177313;177314	239652;239653	239653			2	
KVTEELLTDNR	1	Unmodified	1316.6936	0.69359423	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	28.569	28.066	2	0.00024804	23441	160511_QHF_FH_JSI12i_3	95.573	67.831			0.80924	0.82767	33.157	4	1	Median	1.0203	0.8661	NaN	1	0	Median	0.64187	0.79095	NaN	1	0	Median	1.1495	1.0841	NaN	1	0	Median	0.49182	0.4931	NaN	1	1	Median	299350000	166630000	132720000	51523000	24803000	26720000	71364000	44668000	26696000	123620000	57606000	66018000	52836000	39554000	13282000	28525	5295	27006	177315;177316;177317;177318;177319	239654;239655;239656;239657;239658;239659;239660	239660			7	
KVTGTLDANR	1	Unmodified	1073.5829	0.58292157	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.9071	9.2639	2	0.060362	6848	160511_QHF_FH_JSI9i_3	46.819	37.906			1.8212	1.5071	NaN	1	1	Median	1.8212	1.5071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	301470000	117460000	184010000	301470000	117460000	184010000	0	0	0	0	0	0	0	0	0	28526	2751	27007	177320	239661	239661			1	
KVTHAVVTVPAYFNDAQR	1	Unmodified	2015.0589	0.058858868	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	3	2	2	54.979	49.911	3;4	2.3422E-06	27199	160513_QHF_FH_JSI10Kac_6	100.45	91.631			0.89905	0.84739	22.74	10	1	Median	0.94218	0.7654	19.185	3	1	Median	0.61709	0.71936	23.123	3	0	Plateau	1.0171	0.97396	23.793	2	0	Median	0.8459	0.86037	36.218	2	0	Median	1053300000	549600000	503720000	344360000	176500000	167860000	383860000	211480000	172380000	233930000	113270000	120660000	91170000	48350000	42821000	28527	982	27008	177321;177322;177323;177324;177325;177326;177327;177328;177329;177330	239662;239663;239664;239665;239666;239667;239668;239669;239670;239671;239672;239673;239674;239675;239676;239677;239678;239679;239680;239681;239682;239683;239684	239683			23	
KVTILELFR	1	Unmodified	1117.6859	0.68593008	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	3	1	1		76.827	72.809	3	0.0002156	37503	160513_QHF_FH_JSI9Kac_6	89.047	54.795			1.0254	0.96661	30.654	5	2	Median	1.8667	1.6092	34.288	3	2	Plateau	0.70157	0.82217	NaN	1	0	Median	1.0254	0.96661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	339230000	133690000	205550000	233780000	83920000	149860000	25611000	16805000	8805500	79846000	32963000	46884000	0	0	0	28528	986	27009	177331;177332;177333;177334;177335	239685;239686;239687;239688;239689;239690;239691;239692;239693;239694	239694			10	
KVTLGTQPTVLR	1	Unmodified	1311.7874	0.78743503	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			39.733	38.243	3	0.041494	31901	160511_QHF_FH_JSI10i_3	22.493	11.944			0.90876	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90876	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18266000	8491800	9774300	0	0	0	18266000	8491800	9774300	0	0	0	0	0	0	28529	2734	27010	177336	239695	239695			1	
KVTLSTDK	2	Unmodified	890.5073	0.50729701	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	9.9197	9.7732	2;3	0.01186	7037	160511_QHF_FH_JSI12i_3	53.968	17.573			1.7907	1.8603	99.958	3	1	Median	NaN	NaN	NaN	0	0	Median	0.34169	0.39265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1179	2.1719	21.901	2	1	Median	486190000	222410000	263780000	0	0	0	112680000	91786000	20890000	0	0	0	373510000	130620000	242890000	28530	1520	27011	177337;177338;177339	239696;239697;239698	239697			3	
KVTMINAIPVASLDPIK	2	Unmodified	1809.0434	0.043391725	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							1	4	3	3	87.635	87.215	2;3	2.7713E-05	75486	160511_QHF_FH_JSI12i_3	102.73	88.821			0.85383	0.83748	6.4069	9	9	Median	1.0224	0.83748	NaN	1	1	Median	0.68088	0.77889	10.248	2	2	Median	0.93561	0.8957	6.3714	3	3	Plateau	0.81497	0.84135	4.5528	3	3	Median	1672900000	915780000	757160000	22962000	9941000	13021000	264400000	155960000	108440000	626610000	335910000	290700000	758970000	413980000	345000000	28531	5658	27012	177340;177341;177342;177343;177344;177345;177346;177347;177348;177349;177350	239699;239700;239701;239702;239703;239704;239705;239706;239707;239708;239709;239710	239709			12	
KVTMINAIPVASLDPIK	2	Oxidation (M)	1825.0383	0.038306347	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	77.129	76.098	3	0.005403	63840	160511_QHF_FH_JSI10i_3	47.68	41.517			0.91416	0.79937	14.174	3	3	Median	0.9991	0.79937	NaN	1	1	Median	0.66319	0.74433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91416	0.97824	NaN	1	1	Median	95168000	46723000	48445000	24391000	11960000	12431000	22805000	14104000	8700600	0	0	0	47972000	20659000	27313000	28532	5658	27012	177351;177352;177353	239711;239712;239713;239714;239715	239711		2725	5	
KVTQLDLDGPK	2	Unmodified	1212.6714	0.67140222	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	3.14		6	8					1		4	4	4	3	32.033	30.68	2;3	2.6302E-05	25640	160511_QHF_FH_JSI12i_3	69.815	59.811			0.77448	0.86251	31.844	15	3	Median	0.88636	0.73626	36.368	4	2	Median	0.77106	0.91717	14.793	4	0	Median	0.90321	0.86299	36.287	4	1	Median	0.64601	0.65233	39.837	3	0	Plateau	4605100000	2309000000	2296000000	494570000	246300000	248270000	716400000	348900000	367500000	1436800000	691750000	745020000	1957300000	1022100000	935250000	28533	2415	27013	177354;177355;177356;177357;177358;177359;177360;177361;177362;177363;177364;177365;177366;177367;177368	239716;239717;239718;239719;239720;239721;239722;239723;239724;239725;239726;239727;239728;239729;239730;239731;239732;239733;239734;239735;239736;239737;239738;239739;239740	239739			24	
KVTQQDVK	2	Unmodified	944.5291	0.52909508	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							1	2	2	1	5.2201	4.8795	2;3	0.008204	2804	160511_QHF_FH_JSI11i_3	57.59	14.991			0.84875	0.8586	17.146	6	0	Median	1.3175	1.1181	NaN	1	0	Median	0.79547	0.95347	28.367	2	0	Median	0.84875	0.83868	4.8893	2	0	Median	0.77133	0.84912	NaN	1	0	Median	1253200000	699660000	553520000	165290000	85259000	80029000	474840000	264200000	210640000	579480000	325960000	253520000	33568000	24234000	9333800	28534	1426	27014	177369;177370;177371;177372;177373;177374	239741;239742;239743;239744;239745;239746;239747;239748	239741			8	
KVTQQDVKK	3	Unmodified	1072.6241	0.6240581	1426	P35241	RDX	Radixin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	4.9483	4.7901	2;3	0.00073097	2532	160511_QHF_FH_JSI10i_3	82.261	19.185			0.61544	0.54244	25.231	5	5	Median	0.67493	0.54244	NaN	1	1	Median	0.38396	0.44209	NaN	1	1	Median	0.38627	0.37218	NaN	1	1	Median	0.6424	0.65737	6.9179	2	2	Median	5480400000	3035600000	2444800000	2078100000	985470000	1092600000	1695800000	1019600000	676230000	238240000	129880000	108360000	1468300000	900660000	567600000	28535	1426	27015	177375;177376;177377;177378;177379	239749;239750;239751;239752;239753	239750			5	
KVTSVVFHPSQDLVFSASPDATIR	1	Unmodified	2600.3599	0.3598515	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							2	3	3		74.969	74.073	3;4	3.4634E-12	65698	160511_QHF_FH_JSI11i_3	98.967	92.672			0.86015	0.85772	12.856	8	4	Median	0.95298	0.7777	16.228	2	0	Median	0.72424	0.83659	8.456	3	2	Median	1.1315	1.0576	11.398	3	2	Plateau	NaN	NaN	NaN	0	0	Median	855180000	438890000	416290000	130720000	66026000	64690000	240250000	143130000	97122000	484220000	229740000	254480000	0	0	0	28536	5426	27016	177380;177381;177382;177383;177384;177385;177386;177387	239754;239755;239756;239757;239758;239759;239760;239761;239762;239763;239764;239765;239766	239754			13	
KVTSWVLNTFLGYLK	2	Unmodified	1767.9923	0.99234243	577	O75879	GATB	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			93.816	88.095	3	0.00020988	50562	160513_QHF_FH_JSI10Kac_6	98.676	76.845			0.56225	0.66022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56225	0.66022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118630000	78027000	40598000	0	0	0	118630000	78027000	40598000	0	0	0	0	0	0	28537	577	27017	177388;177389	239767;239768	239767			2	
KVTTTVHNIIVGK	2	Unmodified	1408.8402	0.84019889	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			9						3	4	5	2	1	35.01	31.361	2;3	0.00014691	25359	160511_QHF_FH_JSI9i_3	69.716	46.49			0.59415	0.65536	42.275	6	6	Median	0.59489	0.49472	29.443	2	2	Median	0.56646	0.67141	6.3803	3	3	Median	1.6038	1.4746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	233690000	132510000	101180000	71085000	43657000	27428000	121670000	70169000	51504000	40931000	18682000	22249000	0	0	0	28538	1201	27018	177390;177391;177392;177393;177394;177395;177396;177397;177398;177399;177400;177401	239769;239770;239771;239772;239773;239774;239775;239776;239777;239778;239779;239780	239775			12	
KVTVENTK	2	Unmodified	917.5182	0.51819605	2940	Q5T200	ZC3H13	Zinc finger CCCH domain-containing protein 13	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.1273	5.1273	2	0.05202	2792	160511_QHF_FH_JSI11i_3	37.021	10.419			1.0799	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0799	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	308490000	103010000	205480000	0	0	0	0	0	0	308490000	103010000	205480000	0	0	0	28539	2940	27019	177402	239781	239781			1	
KVTVGLYGPK	2	Unmodified	1060.6281	0.62808085	5191	Q9P0V3	SH3BP4	SH3 domain-binding protein 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.745	30.341	3	0.053771	24714	160511_QHF_FH_JSI9i_3	23.226	19.818			1.7723	1.4744	NaN	1	1	Median	1.7723	1.4744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16326000	6853600	9472200	16326000	6853600	9472200	0	0	0	0	0	0	0	0	0	28540	5191	27020	177403	239782	239782			1	
KVVDNTTAK	2	Unmodified	974.53966	0.53965977	4642	Q9H0U4;Q92928	RAB1B;RAB1C	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	2	3	3	5.1138	4.8978	2;3	0.00010259	2609	160511_QHF_FH_JSI12i_3	80.986	56.956			1.0276	1.098	44.503	8	3	Median	0.74881	0.65288	NaN	1	1	Median	0.93112	1.058	5.2155	2	0	Median	1.3946	1.3103	24.966	2	1	Median	1.0927	1.1034	63.996	3	1	Median	4539900000	2189500000	2350400000	276790000	162600000	114190000	324580000	169950000	154630000	1427500000	609760000	817700000	2511100000	1247100000	1263900000	28541	4642	27021	177404;177405;177406;177407;177408;177409;177410;177411;177412	239783;239784;239785;239786;239787;239788;239789;239790;239791;239792;239793;239794	239792			12	
KVVDPFSK	2	Unmodified	918.51747	0.51746776	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	29.657	28.959	2	0.0067508	23997	160511_QHF_FH_JSI12i_3	61.962	35.36			1.1859	1.4055	18.717	4	1	Linear	1.8829	1.5192	NaN	1	1	Median	1.6011	1.8577	NaN	1	0	Median	1.3618	1.3004	NaN	1	0	Median	1.1824	1.2204	NaN	1	0	Median	928930000	473400000	455520000	84984000	34046000	50937000	118530000	57914000	60620000	246450000	134420000	112030000	478960000	247020000	231940000	28542	1948	27022	177413;177414;177415;177416	239795;239796;239797;239798;239799;239800	239799			6	
KVVDPFSKK	3	Unmodified	1046.6124	0.61243078	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	20.173	20.186	3	0.022629	16445	160511_QHF_FH_JSI12i_3	42.718	29.626			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28543	1948	27023	177417	239801	239801			1	
KVVDYTTAK	2	Unmodified	1023.5601	0.56006086	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	12.135	11.82	2;3	3.7847E-05	8981	160511_QHF_FH_JSI12i_3	77.192	63.839			1.3575	1.4178	55.349	8	4	Median	3.1959	2.7386	NaN	1	1	Median	1.3578	1.5734	63.865	3	2	Median	0.8514	0.80115	52.74	2	1	Median	1.3873	1.4178	3.168	2	0	Median	3636000000	1771300000	1864700000	114320000	36628000	77687000	338920000	156930000	181990000	807490000	387240000	420250000	2375300000	1190500000	1184800000	28544	2020	27024	177418;177419;177420;177421;177422;177423;177424;177425	239802;239803;239804;239805;239806;239807;239808;239809;239810;239811;239812	239812			11	
KVVEDIEYLK	2	Unmodified	1234.6809	0.68090428	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.494	42.272	2	0.0011481	36205	160511_QHF_FH_JSI12i_3	67.726	27.623			0.88476	0.89367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88476	0.89367	NaN	1	0	Median	84363000	45277000	39086000	0	0	0	0	0	0	0	0	0	84363000	45277000	39086000	28545	675	27025	177426	239813;239814	239814			2	
KVVETEDAYK	2	Unmodified	1180.5976	0.59756858	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	12.725	12.807	2	0.020653	9849	160511_QHF_FH_JSI12i_3	46.462	32.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28546	2649	27026	177427	239815	239815			1	
KVVGCSCVVVK	2	Unmodified	1233.6573	0.65734884	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	20.567	20.029	2;3	0.00067003	16141	160511_QHF_FH_JSI9i_3	43.501	39.924			0.6415	0.65877	69.894	9	6	Median	1.5587	1.2689	1.1371	2	0	Median	0.33462	0.39172	19.504	2	2	Median	0.26359	0.25074	26.306	2	1	Median	0.69819	0.70479	43.051	3	3	Median	551680000	329660000	222020000	66673000	25093000	41580000	130120000	93243000	36881000	90801000	62686000	28114000	264080000	148640000	115440000	28547	1258	27027	177428;177429;177430;177431;177432;177433;177434;177435;177436	239816;239817;239818;239819;239820;239821;239822;239823;239824;239825	239822			10	
KVVKQASEGPLK	3	Acetyl (K)	1324.7715	0.77145062	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.748							2	4	4	2	3	3	2	29.565	20.548	3	0.00020638	11973	160513_QHF_FH_JSI10Kac_6	89.43	80.236			0.76746	0.78494	55.051	10	0	Median	1.0445	0.89361	9.1645	2	0	Median	0.89643	1.0788	13.307	3	0	Plateau	0.34044	0.34209	9.2896	3	0	Median	0.64352	0.68338	10.421	2	0	Median	262540000	166860000	95688000	17880000	8152200	9728100	68269000	32501000	35768000	137310000	102480000	34835000	39084000	23726000	15357000	28548	812	27028	177437;177438;177439;177440;177441;177442;177443;177444;177445;177446	239826;239827;239828;239829;239830;239831;239832;239833;239834;239835	239835	450;451		10	
KVVKQASEGPLK	3	2 Acetyl (K)	1366.782	0.78201531	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	2	0	0	2			By MS/MS		13	0						1						1		45.305	36.002	2	0.001343	20254	160513_QHF_FH_JSI11Kac_3	94.616	58.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2604300	2604300	0	0	0	0	0	0	0	2604300	2604300	0	0	0	0	28549	812	27028	177447	239836	239836	450;451		1	
KVVLLTGETSTDLK	2	Unmodified	1502.8556	0.85557418	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	47.602	47.192	2;3	0.00014071	40195	160511_QHF_FH_JSI12i_3	69.878	42.909			1.0542	1.0105	24.43	5	5	Median	NaN	NaN	NaN	0	0	Median	0.58073	0.67017	NaN	1	1	Median	1.2405	1.1466	17.868	2	2	Median	0.97012	0.96711	12.018	2	2	Median	617680000	296490000	321190000	0	0	0	33403000	20210000	13193000	173550000	75821000	97729000	410730000	200460000	210270000	28550	552	27029	177448;177449;177450;177451;177452;177453;177454;177455	239837;239838;239839;239840;239841;239842;239843;239844	239844			8	
KVVNPLFEK	2	Unmodified	1072.6281	0.62808085	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	38.781	37.947	2;3	9.0662E-05	31256	160511_QHF_FH_JSI9i_3	94.692	50.245			0.85079	0.95512	27.35	10	0	Median	1.4089	1.1326	14.277	3	0	Median	0.8674	1.0468	6.9942	3	0	Median	0.64815	0.60998	12.922	2	0	Median	0.69416	0.6999	7.4905	2	0	Median	14503000000	6082200000	8421000000	3072800000	1120200000	1952700000	2932400000	1377400000	1555000000	3205300000	1492100000	1713200000	5292700000	2092600000	3200100000	28551	2007	27030	177456;177457;177458;177459;177460;177461;177462;177463;177464;177465	239845;239846;239847;239848;239849;239850;239851;239852;239853;239854;239855;239856;239857;239858;239859;239860;239861;239862;239863;239864	239857			20	
KVVPLDFSMSSLAK	2	Unmodified	1520.8273	0.82725094	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	73.69	73.544	3	0.0038753	65583	160511_QHF_FH_JSI11i_3	50.806	44.858			0.35698	0.34837	47.894	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26663	0.24829	NaN	1	1	Median	0.47796	0.48878	NaN	1	1	Median	222240000	173860000	48386000	0	0	0	0	0	0	111090000	95048000	16038000	111160000	78807000	32348000	28552	1822	27031	177466;177467	239865;239866	239865			2	
KVVQLDVR	1	Unmodified	955.58147	0.581465	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	23.443	22.706	2;3	0.00072749	18740	160511_QHF_FH_JSI10i_3	69.423	60.209			0.71153	0.75012	58.935	7	1	Median	1.5588	1.2827	128.37	2	1	Median	0.65341	0.75724	1.3353	2	0	Median	0.77429	0.72512	4.9336	2	0	Median	0.71153	0.7373	NaN	1	0	Median	686090000	326590000	359500000	214380000	72655000	141730000	185320000	114220000	71101000	247000000	115310000	131690000	39383000	24401000	14981000	28553	736	27032	177468;177469;177470;177471;177472;177473;177474	239867;239868;239869;239870;239871;239872;239873	239870			7	
KVVSLNGELGDSWIVPLDNLTK	2	Unmodified	2396.2951	0.29512597	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.02	101.04	3	3.5519E-10	87660	160511_QHF_FH_JSI12i_3	107.56	99.86			0.89389	0.91439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89389	0.91439	NaN	1	0	Median	179880000	94800000	85076000	0	0	0	0	0	0	0	0	0	179880000	94800000	85076000	28554	155	27033	177475	239874	239874			1	
KVVVSPTK	2	Unmodified	856.5382	0.53820321	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		9.2871	9.2871	3	0.0053277	7000	160511_QHF_FH_JSI11i_3	39.022	11.693			0.85401	0.81202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85401	0.81202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1488800000	818420000	670410000	0	0	0	0	0	0	1488800000	818420000	670410000	0	0	0	28555	1154	27034	177476	239875	239875			1	
KVVVSPTKK	3	Unmodified	984.63317	0.63316622	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	6.708	6.4635	3	0.00035276	3758	160511_QHF_FH_JSI12i_3	85.355	66.04			0.79735	0.73435	32.944	4	4	Linear	0.62675	0.49945	NaN	1	1	Median	0.39242	0.45889	NaN	1	1	Median	0.30866	0.29387	NaN	1	1	Median	0.64838	0.64873	NaN	1	1	Median	1786000000	998630000	787340000	433670000	225390000	208290000	288020000	172790000	115240000	230900000	158390000	72509000	833370000	442060000	391310000	28556	1154	27035	177477;177478;177479;177480;177481;177482;177483;177484	239876;239877;239878;239879;239880;239881;239882;239883	239883			8	
KVVVSPTKK	3	Acetyl (K)	1026.6437	0.64373091	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	2				By MS/MS	16	0									1				1	21.836	14.522	3	0.048508	8124	160513_QHF_FH_JSI12Kac_6	36.684	16.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28557	1154	27035	177485	239884	239884			1	
KVVVYLQK	2	Unmodified	975.6117	0.6117025	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	1	2	3	31.78	26.45	2;3	0.002607	15152	160513_QHF_FH_JSI10Kac_6	61.999	39.913			0.9866	0.97402	37.696	5	3	Median	1.0278	0.88197	NaN	1	0	Median	0.75548	0.92209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9866	0.99722	45.723	3	3	Median	340610000	185670000	154930000	20332000	9424400	10907000	26931000	13314000	13617000	0	0	0	293340000	162940000	130410000	28558	1806	27036	177486;177487;177488;177489;177490;177491;177492	239885;239886;239887;239888;239889;239890;239891	239891			6	
KVYENYPTYDLTER	1	Unmodified	1789.8523	0.85227972	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		44.269	44.269	3	0.019878	39002	160511_QHF_FH_JSI11i_3	37.555	9.9116			1.111	1.0442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.111	1.0442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74521000	32378000	42143000	0	0	0	0	0	0	74521000	32378000	42143000	0	0	0	28559	1444	27037	177493	239892	239892			1	
KVYFHTDAAQAVGK	2	Acetyl (K)	1575.8045	0.80454166	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	50.435	41.106	2;3	1.4003E-06	22355	160513_QHF_FH_JSI11Kac_6	113.72	87.6			0.9072	0.91959	26.205	4	0	Median	1.0151	0.8653	NaN	1	0	Median	0.92811	1.105	NaN	1	0	Median	0.61027	0.6022	NaN	1	0	Median	0.88676	0.97728	NaN	1	0	Median	67558000	38751000	28806000	11549000	5928200	5620600	17330000	8080000	9250300	24949000	15746000	9203000	13730000	8997300	4732500	28560	5712	27038	177494;177495;177496;177497;177498	239893;239894;239895;239896;239897	239893	3536		5	
KVYSFLDK	2	Acetyl (K)	1040.5542	0.5542472	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		63.542	52.622	2	0.041914	28632	160513_QHF_FH_JSI11Kac_5	61.962	36.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2262300	2262300	0	0	0	0	0	0	0	2262300	2262300	0	0	0	0	28561	2925	27039	177499	239898	239898			1	
KWAAGQNK	2	Unmodified	901.477	0.47699993	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	5.6953	5.4644	2;3	0.00029506	3418	160511_QHF_FH_JSI10i_3	81.191	76.834			0.74955	0.75587	23.181	8	0	Median	1.4658	1.1844	7.4867	2	0	Median	0.64672	0.74116	0.81059	2	0	Median	0.90522	0.83901	12.79	2	0	Median	0.66158	0.68286	3.0181	2	0	Median	2503200000	1275100000	1228000000	795380000	331240000	464140000	744650000	443190000	301460000	742370000	366830000	375540000	220780000	133880000	86899000	28562	455	27040	177500;177501;177502;177503;177504;177505;177506;177507	239899;239900;239901;239902;239903;239904;239905;239906;239907;239908	239903			10	
KWAEQYLK	2	Unmodified	1064.5655	0.56548059	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	31.929	31.158	2;3	0.0010187	25358	160511_QHF_FH_JSI9i_3	69.423	61.498			1.042	1.1357	21.708	10	1	Median	1.0771	0.87398	36.497	3	0	Median	0.9636	1.1006	13.353	3	0	Median	1.035	0.99091	23.718	2	1	Median	1.251	1.2564	3.0912	2	0	Median	4232100000	2143300000	2088800000	712190000	361870000	350320000	708940000	346140000	362800000	1237900000	592740000	645210000	1573000000	842520000	730480000	28563	1332	27041	177508;177509;177510;177511;177512;177513;177514;177515;177516;177517	239909;239910;239911;239912;239913;239914;239915;239916;239917;239918;239919;239920;239921;239922;239923;239924;239925;239926;239927;239928;239929;239930	239918			22	
KWALHILAR	1	Acetyl (K)	1148.6818	0.68184775	686	O95373	IPO7	Importin-7	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.195	62.776	3	0.0021598	34029	160513_QHF_FH_JSI11Kac_6	71.349	57.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7586400	7586400	0	0	0	0	0	0	0	7586400	7586400	0	0	0	0	28564	686	27042	177518	239931	239931	345		1	
KWALHILAR	1	Unmodified	1106.6713	0.67128306	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			57.029	48.517	3	0.0041781	26660	160513_QHF_FH_JSI10Kac_6	47.603	36.381			0.89407	1.0565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89407	1.0565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18622000	9716900	8905400	0	0	0	18622000	9716900	8905400	0	0	0	0	0	0	28565	686	27042	177519	239932;239933	239933			2	
KWDALVIK	2	Unmodified	971.5804	0.58040237	4935	Q9NQZ5	STARD7	StAR-related lipid transfer protein 7, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	49.48	48.878	3	0.0045961	41702	160511_QHF_FH_JSI12i_3	47.198	37.984			0.9056	0.9057	37.793	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80351	0.94833	NaN	1	0	Median	0.50829	0.48218	NaN	1	1	Median	0.9056	0.9057	NaN	1	0	Median	97765000	55596000	42169000	0	0	0	18664000	10870000	7794100	24742000	13745000	10996000	54360000	30981000	23378000	28566	4935	27043	177520;177521;177522	239934;239935;239936	239936			3	
KWDICAGNAILK	2	Unmodified	1387.7282	0.7282056	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	60.327	60.148	2;3	2.1881E-06	51752	160511_QHF_FH_JSI12i_3	98.902	77.029			1.0569	1.1283	30.128	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89918	0.83353	NaN	1	0	Median	1.2574	1.3107	21.198	2	0	Median	242160000	103140000	139020000	0	0	0	0	0	0	85925000	48612000	37313000	156240000	54531000	101710000	28567	5097	27044	177523;177524;177525	239937;239938;239939;239940	239939			4	
KWDLSELPK	2	Unmodified	1114.6023	0.60226003	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	4	3	3	57.553	56.685	2;3	1.2301E-06	49159	160511_QHF_FH_JSI11i_2	105.4	78.723			1.0161	0.94909	17.119	13	0	Median	1.0161	0.86585	5.2991	3	0	Plateau	0.74618	0.88694	16.077	4	0	Median	1.1601	1.0676	6.4712	3	0	Plateau	1.0535	1.057	29.53	3	0	Plateau	4677000000	2315700000	2361300000	235020000	128080000	106940000	691780000	392050000	299730000	1401900000	662500000	739390000	2348300000	1133000000	1215300000	28568	3893	27045	177526;177527;177528;177529;177530;177531;177532;177533;177534;177535;177536;177537;177538	239941;239942;239943;239944;239945;239946;239947;239948;239949;239950;239951;239952;239953;239954;239955;239956;239957;239958;239959;239960;239961;239962;239963;239964;239965;239966;239967;239968;239969;239970	239960			30	
KWDLSELPK	2	Acetyl (K)	1156.6128	0.61282471	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	77.051	66.488	2	0.017	35527	160513_QHF_FH_JSI12Kac_4	66.435	35.864			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28569	3893	27045	177539	239971	239971	2988		1	
KWDTCAPEVILHAVGGK	2	Unmodified	1879.9615	0.96145301	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	77.367	76.706	3;4	2.0427E-05	66043	160511_QHF_FH_JSI12i_3	85.493	84.1			1.008	0.9617	60.738	5	1	Median	NaN	NaN	NaN	0	0	Median	0.91475	1.0516	18.782	2	1	Median	1.008	0.9617	NaN	1	0	Median	0.53369	0.53374	96.464	2	0	Median	139990000	87497000	52495000	0	0	0	26848000	13853000	12995000	29688000	14809000	14879000	83455000	58835000	24620000	28570	738	27046	177540;177541;177542;177543;177544	239972;239973;239974;239975;239976;239977;239978	239978			7	
KWEDDLK	2	Unmodified	932.46035	0.46034682	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.8861	9.9807	3	0.05494	7339	160511_QHF_FH_JSI12i_3	24.155	5.4241			1.4563	1.4669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4563	1.4669	NaN	1	1	Median	80819000	19662000	61157000	0	0	0	0	0	0	0	0	0	80819000	19662000	61157000	28571	227	27047	177545	239979	239979			1	
KWEDDLKK	3	Acetyl (K)	1102.5659	0.56587452	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	1	0	0	2	By MS/MS				14	0							1			1				4.26	-6.2931	3	0.035051	1204	160513_QHF_FH_JSI9Kac_4	55.064	37.005			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	221110000	0	221110000	221110000	0	221110000	0	0	0	0	0	0	0	0	0	28572	227	27048	177546	239980	239980			1	
KWENGTFPGWPK	2	Unmodified	1445.7092	0.70918471	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	4	1	2	60.039	59.093	2;3	0.00039118	51812	160511_QHF_FH_JSI11i_3	51.875	48.403			1.0736	1.0636	16.993	7	2	Median	1.4588	1.1772	NaN	1	0	Median	0.94822	1.0627	20.081	3	2	Median	1.3186	1.2707	NaN	1	0	Median	0.95381	0.95379	15.405	2	0	Median	958850000	365900000	592950000	85010000	36461000	48549000	241170000	117070000	124100000	237880000	75051000	162830000	394790000	137320000	257460000	28573	2319	27049	177547;177548;177549;177550;177551;177552;177553;177554;177555	239981;239982;239983;239984;239985;239986;239987;239988;239989;239990;239991;239992	239981			12	
KWENPTQNNAGLEDFER	1	Unmodified	2046.9395	0.93953159	1215	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.732	53.18	3	4.9012E-06	44390	160511_QHF_FH_JSI10i_3	94.01	83.953			0.75052	0.8717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75052	0.8717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38168000	20638000	17530000	0	0	0	38168000	20638000	17530000	0	0	0	0	0	0	28574	1215	27050	177556	239993;239994	239994			2	
KWEQDPETFLIIIK	2	Unmodified	1758.9556	0.95562257	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	93.581	93.569	3	0.0020135	83526	160511_QHF_FH_JSI11i_3	50.563	38.417			0.87931	0.88633	19.981	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80152	0.76955	NaN	1	0	Median	0.96464	1.0208	NaN	1	0	Median	27626000	14752000	12874000	0	0	0	0	0	0	6324700	3310900	3013800	21302000	11441000	9860700	28575	3075	27051	177557;177558	239995	239995			1	
KWEQQLQEEQEQK	2	Unmodified	1729.8271	0.8271276	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	23.168	23.162	2;3	0.00026492	19477	160511_QHF_FH_JSI11i_3	75.589	64.149			1.5602	1.5172	65.411	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2339	2.0853	88.786	2	2	Median	1.5602	1.5172	NaN	1	1	Median	422010000	105640000	316360000	0	0	0	0	0	0	389320000	93060000	296260000	32688000	12584000	20104000	28576	3799	27052	177559;177560;177561;177562	239996;239997;239998;239999	239996			4	
KWESPAQNTAHLDQFER	1	Unmodified	2055.9763	0.97625145	1121	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			48.559	46.991	3	0.0091559	39264	160511_QHF_FH_JSI10i_3	41.554	16.761			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28577	1121	27053	177563	240000	240000			1	
KWFPYFLVR	1	Unmodified	1254.6913	0.6913498	4785	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	81.503	73.613	3	5.1071E-05	41048	160513_QHF_FH_JSI10Kac_6	101.64	69.12			0.81512	0.97553	16.722	3	0	Plateau	0.93991	0.81605	NaN	1	0	Median	0.81512	0.97652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64065	0.69915	NaN	1	0	Median	133260000	67966000	65297000	27814000	12732000	15082000	96278000	50167000	46111000	0	0	0	9171800	5067100	4104700	28578	4785	27054	177564;177565;177566	240001;240002;240003;240004	240003			4	
KWGINTYK	2	Unmodified	1008.5393	0.53926584	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		29.184	28.272	3	0.014859	23210	160511_QHF_FH_JSI9i_3	42.287	42.287			0.74256	0.69608	100.45	3	1	Median	0.34398	0.27918	NaN	1	1	Median	1.786	2.076	NaN	1	0	Median	0.74256	0.69608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	292890000	199430000	93462000	185760000	153230000	32528000	33116000	9985500	23131000	74018000	36215000	37803000	0	0	0	28579	1795	27055	177567;177568;177569	240005;240006	240006			2	
KWGMLFLVNQLFK	2	Oxidation (M)	1638.8956	0.89560528	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	89.691	81.397	3	8.9242E-06	43577	160513_QHF_FH_JSI12Kac_6	93.623	82.361			0.76221	0.70936	22.106	4	0	Median	0.79939	0.673	NaN	1	0	Median	0.60759	0.72682	NaN	1	0	Median	0.72675	0.69232	NaN	1	0	Median	1.0129	1.0796	NaN	1	0	Median	790250000	455190000	335060000	212780000	106310000	106470000	428220000	257000000	171220000	50131000	30144000	19987000	99115000	61735000	37380000	28580	2909	27056	177570;177571;177572;177573;177574	240007;240008;240009;240010;240011	240010		2165	4	
KWGMLFLVNQLFK	2	Unmodified	1622.9007	0.90069065	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	95.984	87.577	2;3	2.2766E-31	49332	160513_QHF_FH_JSI9Kac_6	185.29	157.09			0.72999	0.71371	25.284	8	0	Median	0.79198	0.66925	4.2309	2	0	Median	0.72999	0.86884	2.9789	2	0	Median	0.71774	0.67396	12.968	2	0	Median	0.51328	0.54714	46.119	2	0	Median	3758600000	2093400000	1665200000	847380000	454950000	392430000	1852000000	1058500000	793490000	592770000	348070000	244700000	466530000	231910000	234620000	28581	2909	27056	177575;177576;177577;177578;177579;177580;177581;177582;177583	240012;240013;240014;240015;240016;240017;240018;240019;240020;240021;240022;240023;240024;240025;240026	240019			15	
KWGTDEVK	2	Unmodified	961.4869	0.48689592	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	15.248	14.958	2;3	0.00060342	12064	160511_QHF_FH_JSI11i_3	70.816	60.551			1.0988	1.1374	9.5515	6	0	Median	NaN	NaN	NaN	0	0	Median	0.89347	1.0225	16.255	2	0	Median	1.215	1.1704	0.95968	2	0	Median	1.0988	1.1206	0.92889	2	0	Median	2618500000	1295900000	1322600000	0	0	0	269900000	131320000	138570000	958350000	417730000	540610000	1390200000	746800000	643420000	28582	932	27057	177584;177585;177586;177587;177588;177589	240027;240028;240029;240030;240031;240032;240033;240034;240035;240036;240037;240038	240029			12	
KWGVPIEK	2	Unmodified	955.5491	0.54910224	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	37.032	36.259	2;3	0.0040165	30272	160511_QHF_FH_JSI10i_3	49.418	33.215			1.0443	0.95537	31.758	8	0	Median	1.1912	0.97107	1.9476	2	0	Median	0.63889	0.74821	19.089	2	0	Median	1.7216	1.6256	8.0475	2	0	Median	0.8786	0.9085	6.7572	2	0	Median	2403300000	1064800000	1338500000	535590000	244210000	291380000	505330000	236830000	268500000	464640000	195990000	268650000	897710000	387760000	509950000	28583	998	27058	177590;177591;177592;177593;177594;177595;177596;177597	240039;240040;240041;240042;240043;240044;240045;240046;240047;240048;240049;240050;240051;240052;240053;240054	240043			16	
KWNLDELPK	2	Unmodified	1141.6132	0.61315906	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		5	10							4	4	3	4	51.804	51.033	2;3	1.4163E-06	45042	160511_QHF_FH_JSI11i_3	101.65	69.638			0.93941	0.91091	39.361	14	2	Median	1.0598	0.8956	9.1088	4	0	Median	0.81504	0.92436	11.077	3	0	Median	0.97368	0.93258	8.8278	3	0	Plateau	1.1558	1.1677	74.482	4	2	Median	3532300000	1499100000	2033200000	445170000	201100000	244070000	730990000	325900000	405090000	654210000	289010000	365200000	1702000000	683090000	1018900000	28584	1128	27059	177598;177599;177600;177601;177602;177603;177604;177605;177606;177607;177608;177609;177610;177611;177612	240055;240056;240057;240058;240059;240060;240061;240062;240063;240064;240065;240066;240067;240068;240069;240070;240071;240072;240073;240074;240075;240076;240077;240078;240079;240080;240081;240082;240083;240084;240085;240086;240087;240088	240062			34	
KWNLDELPK	2	Acetyl (K)	1183.6237	0.62372375	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	75.622	65.017	2	0.0028038	34657	160513_QHF_FH_JSI11Kac_5	99.815	68.055			0.45457	0.47145	36.03	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3711	0.36542	NaN	1	0	Median	0.55683	0.60825	NaN	1	0	Median	8464900	5825500	2639400	0	0	0	0	0	0	5953800	4369300	1584500	2511100	1456200	1054900	28585	1128	27059	177613;177614	240089	240089	976		1	
KWNLPAVTIAWLLETAR	1	Unmodified	1981.1149	0.11491718	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.21	91.489	3	3.155E-05	53195	160513_QHF_FH_JSI10Kac_6	83.253	58.965			0.55847	0.66426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55847	0.66426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89949000	62149000	27800000	0	0	0	89949000	62149000	27800000	0	0	0	0	0	0	28586	3843	27060	177615	240090;240091	240090			2	
KWPLYMSTK	2	Unmodified	1152.6002	0.60015154	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	1	3	48.707	47.339	2;3	0.00066938	40121	160511_QHF_FH_JSI12i_3	63.283	55.638			1.2209	1.1602	17.435	6	3	Median	1.486	1.2267	12.58	3	2	Median	1.0009	1.1675	18.018	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88787	0.88089	NaN	1	0	Median	620560000	286400000	334150000	280090000	101940000	178160000	187240000	93990000	93254000	0	0	0	153220000	90479000	62743000	28587	1635	27061	177616;177617;177618;177619;177620;177621;177622;177623;177624	240092;240093;240094;240095;240096;240097;240098;240099;240100;240101;240102;240103;240104	240102			13	
KWPLYMSTK	2	Acetyl (K)	1194.6107	0.61071622	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.274	63.891	2	0.0052242	34658	160513_QHF_FH_JSI11Kac_6	80.231	51.07			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9697900	9697900	0	0	0	0	0	0	0	9697900	9697900	0	0	0	0	28588	1635	27061	177625	240105;240106	240105	1650		2	
KWQDEDGK	2	Unmodified	1004.4563	0.45632407	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	6.6986	6.7475	2	0.0010072	4276	160511_QHF_FH_JSI12i_3	95.502	69.675			0.72924	0.71289	12.894	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84317	0.78095	NaN	1	0	Median	0.63071	0.65077	NaN	1	0	Median	331040000	174940000	156100000	0	0	0	0	0	0	148760000	71141000	77616000	182280000	103800000	78481000	28589	1484	27062	177626;177627	240107;240108;240109	240109			3	
KWQDEDGKK	3	Unmodified	1132.5513	0.55128709	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			17							4	8	2	3	6.2547	5.9778	2;3;4	0.00033044	3386	160511_QHF_FH_JSI11i_3	74.841	49.988			0.6589	0.77036	40.837	12	2	Median	1.8243	1.4828	20.831	3	1	Plateau	0.8032	0.91375	20.604	4	1	Median	0.5736	0.54729	6.9182	2	0	Median	0.47901	0.48967	7.4595	3	0	Plateau	4051800000	2221800000	1830000000	506670000	249940000	256730000	1077200000	570160000	507020000	1786000000	941110000	844890000	681950000	460600000	221340000	28590	1484	27063	177628;177629;177630;177631;177632;177633;177634;177635;177636;177637;177638;177639;177640;177641;177642;177643;177644	240110;240111;240112;240113;240114;240115;240116;240117;240118;240119;240120;240121;240122;240123;240124;240125;240126;240127;240128	240112			18	
KWQFVEK	2	Unmodified	963.5178	0.51780212	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	1	3	32.243	31.435	2;3	0.0024063	25800	160511_QHF_FH_JSI9i_3	73.26	54.529			0.95251	1.1086	51.028	9	5	Median	1.5931	1.2878	9.1811	2	0	Median	0.95251	1.1086	20.258	3	2	Median	0.49275	0.45533	NaN	1	0	Median	0.43424	0.43613	61.706	3	3	Plateau	894980000	473500000	421480000	265090000	108650000	156440000	262700000	131520000	131180000	112910000	64523000	48388000	254270000	168810000	85467000	28591	565	27064	177645;177646;177647;177648;177649;177650;177651;177652;177653	240129;240130;240131;240132;240133;240134;240135;240136;240137;240138;240139	240134			11	
KWQNADLNGK	2	Unmodified	1172.5938	0.5938206	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.082	16.082	2	0.014065	13280	160511_QHF_FH_JSI11i_3	43.442	33.438			1.6868	1.6148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6868	1.6148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42136000	19619000	22517000	0	0	0	0	0	0	42136000	19619000	22517000	0	0	0	28592	1060	27065	177654	240140	240140			1	
KWQTMIEAHVDVK	2	Unmodified	1583.813	0.81299786	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1		By MS/MS			7.33	6.13			2						1		3			53.668	49.788	3	0.0015688	42033	160511_QHF_FH_JSI10i_3	52.527	40.735			0.40568	0.46664	49.745	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.40568	0.46664	49.745	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87451000	59155000	28295000	0	0	0	87451000	59155000	28295000	0	0	0	0	0	0	28593	1948	27066	177655;177656;177657	240141;240142;240143	240141			3	
KWSEALVLYDR	1	Unmodified	1378.7245	0.72450043	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1	By MS/MS		By MS/MS		9.5	6.5			1						1	1		1		57.615	57.615	2;3	0.051785	51093	160511_QHF_FH_JSI11i_3	35.541	23.494			1.0467	0.94586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0467	0.94586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33481000	17146000	16335000	0	0	0	0	0	0	33481000	17146000	16335000	0	0	0	28594	5295	27067	177658;177659	240144;240145	240144			2	
KWTTLNSLQLHGLQLR	1	Unmodified	1907.0741	0.074115002	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			75.318	68.947	3	0.00029445	37564	160513_QHF_FH_JSI10Kac_6	89.866	78.767			0.60008	0.71027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60008	0.71027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136110000	86351000	49763000	0	0	0	136110000	86351000	49763000	0	0	0	0	0	0	28595	2282	27068	177660	240146	240146			1	
KWVTQPLLK	2	Unmodified	1111.6754	0.67536539	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			46.369	44.783	3	0.0040949	37446	160511_QHF_FH_JSI10i_3	46.462	40.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28596	1176	27069	177661;177662	240147;240148	240147			2	
KWVYPSEQMFWNAMLK	2	Unmodified	2056.9903	0.9903103	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.71	100.73	3	0.0089294	87374	160511_QHF_FH_JSI12i_3	45.438	35.65			2.0386	2.0933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0386	2.0933	NaN	1	1	Median	65607000	16994000	48612000	0	0	0	0	0	0	0	0	0	65607000	16994000	48612000	28597	1810	27070	177663	240149	240149			1	
KWYTIFK	2	Unmodified	984.54329	0.54328858	4569	Q9BZL1	UBL5	Ubiquitin-like protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	56.234	51.168	3	0.0036842	43216	160511_QHF_FH_JSI12i_3	65.038	55.45			1.0016	0.94912	11.508	8	0	Median	1.035	0.86989	5.9227	2	0	Median	0.89867	1.0316	18.346	2	0	Median	0.96144	0.91809	14.063	2	0	Median	0.95606	0.99519	0.29739	2	0	Median	586390000	266320000	320070000	100470000	35998000	64468000	179420000	88488000	90934000	108890000	50668000	58217000	197620000	91162000	106450000	28598	4569	27071	177664;177665;177666;177667;177668;177669;177670;177671	240150;240151;240152;240153;240154;240155;240156;240157	240156			8	
KWYTMLANEK	2	Acetyl (K)	1324.6486	0.64855829	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		68.792	59.23	2	0.0026836	32086	160513_QHF_FH_JSI11Kac_6	83.862	55.463			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5718000	5718000	0	0	0	0	0	0	0	5718000	5718000	0	0	0	0	28599	3795	27072	177672	240158	240158	2941		1	
KWYYNAAGFNK	2	Acetyl (K)	1402.667	0.66698555	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	67.402	57.678	2	3.0929E-24	31293	160513_QHF_FH_JSI11Kac_6	188.66	161.54			0.36784	0.37843	54.554	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26576	0.25731	NaN	1	1	Median	0.50912	0.55657	NaN	1	1	Median	36424000	28787000	7636800	0	0	0	0	0	0	30950000	25024000	5925500	5473900	3762700	1711300	28600	1066	27073	177673;177674;177675	240159;240160;240161	240159	899		3	
KYAALYQPLFDK	2	Acetyl (K)	1497.7868	0.78676633	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		81.477	71.392	2	2.2602E-07	37777	160513_QHF_FH_JSI11Kac_5	115.18	97.311			0.17737	0.17	120.03	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3276	1.5624	NaN	1	0	Median	0.20373	0.19892	22.216	2	0	Median	NaN	NaN	NaN	0	0	Median	89069000	72261000	16808000	0	0	0	2879400	899190	1980200	86189000	71362000	14828000	0	0	0	28601	4309	27074	177676;177677;177678	240162;240163;240164;240165;240166;240167	240165	3123		6	
KYADLLEESR	1	Unmodified	1222.6194	0.61936665	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.3	33.3	2	0.0005305	28953	160511_QHF_FH_JSI11i_3	72.006	49.92			0.84769	0.75813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84769	0.75813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47747000	23798000	23950000	0	0	0	0	0	0	47747000	23798000	23950000	0	0	0	28602	5011	27075	177679	240168	240168			1	
KYADLLEESR	1	Acetyl (K)	1264.6299	0.62993134	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			58.325	47.666	2	0.014103	26304	160513_QHF_FH_JSI10Kac_4	67.214	48.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3662700	0	3662700	0	0	0	3662700	0	3662700	0	0	0	0	0	0	28603	5011	27075	177680	240169	240169	3295		1	
KYADVIIPR	1	Unmodified	1073.6233	0.62332982	4574	Q9BZX2;Q9HA47	UCK2;UCK1	Uridine-cytidine kinase 2;Uridine-cytidine kinase 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	2	1	2	38.547	37.63	2;3	0.0012851	30750	160511_QHF_FH_JSI9i_3	69.812	50.035			1.4915	1.4997	13.12	8	5	Median	1.8286	1.4896	2.168	3	2	Median	1.3402	1.5727	1.1758	2	1	Median	1.6596	1.5735	NaN	1	1	Median	1.1681	1.1589	0.67795	2	1	Median	444420000	177740000	266680000	123570000	45213000	78360000	122600000	54128000	68476000	106860000	32472000	74392000	91381000	45925000	45456000	28604	4574	27076	177681;177682;177683;177684;177685;177686;177687;177688	240170;240171;240172;240173;240174;240175;240176;240177	240173			8	
KYAEAVTR	1	Unmodified	936.50288	0.50288033	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.35		4	8						3	4	5	3	3	8.6407	6.9381	2;3	0.00060342	5558	160511_QHF_FH_JSI9i_3	70.816	51.039			0.96858	1.0563	17.102	15	0	Median	1.5328	1.2556	13.477	4	0	Median	0.74802	0.87907	15.632	5	0	Median	0.94609	0.95462	5.9719	3	0	Median	0.96858	1.0563	11.336	3	0	Median	13356000000	6407700000	6948300000	3267100000	1313000000	1954100000	4977400000	2606300000	2371100000	4277900000	2025400000	2252500000	833650000	463010000	370630000	28605	775	27077	177689;177690;177691;177692;177693;177694;177695;177696;177697;177698;177699;177700;177701;177702;177703	240178;240179;240180;240181;240182;240183;240184;240185;240186;240187;240188;240189;240190;240191;240192;240193;240194	240189			16	
KYAEAVTR	1	Acetyl (K)	978.51345	0.51344502	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	2	1	22.717	13.69	2	0.010178	10078	160513_QHF_FH_JSI11Kac_4	101.65	42.665			0.52841	0.59895	62.162	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.2389	9.9658	2	0	Median	0.36286	0.36034	3.2879	2	0	Median	0.52841	0.59895	NaN	1	0	Median	659090000	457380000	201710000	0	0	0	134880000	67320000	67561000	517830000	385930000	131900000	6375000	4125700	2249200	28606	775	27077	177704;177705;177706;177707;177708	240195;240196	240196	396		2	
KYAMEQSIK	2	Unmodified	1096.5587	0.55868065	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	18.519	18.25	2;3	0.0073054	14691	160511_QHF_FH_JSI12i_3	68.847	24.422			1.3097	1.2896	42.414	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.50246	0.5729	NaN	1	1	Median	1.6203	1.5485	NaN	1	1	Median	1.1022	1.1095	13.611	2	2	Median	383100000	155940000	227160000	0	0	0	14230000	9011100	5218600	167030000	55083000	111950000	201840000	91846000	109990000	28607	5315	27078	177709;177710;177711;177712	240197;240198;240199;240200	240199			4	
KYAMEQSIK	2	Acetyl (K)	1138.5692	0.56924534	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.076	31.148	2	0.0012763	18910	160513_QHF_FH_JSI11Kac_4	105.4	81.242			0.26431	0.26251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26431	0.26251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22573000	18753000	3819200	0	0	0	0	0	0	22573000	18753000	3819200	0	0	0	28608	5315	27078	177713	240201	240201	3363		1	
KYAPTEAQLNAVDALIDSMSLAK	2	Unmodified	2448.257	0.25702591	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	101.56	101.57	3	8.7492E-35	88237	160511_QHF_FH_JSI12i_3	214.92	195.88			0.93645	0.90749	2.0538	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98006	0.92076	NaN	1	1	Median	0.89478	0.8944	NaN	1	1	Median	2583300000	1167300000	1416000000	0	0	0	0	0	0	1051400000	471790000	579560000	1531900000	695480000	836440000	28609	1024	27079	177714;177715	240202;240203	240203			2	
KYAPTEAQLNAVDALIDSMSLAK	2	Oxidation (M)	2464.2519	0.25194053	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	89.902	89.814	3	0.020287	77868	160511_QHF_FH_JSI12i_3	30.249	21.648			0.81368	0.83207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81368	0.83207	NaN	1	1	Median	69578000	45566000	24012000	0	0	0	0	0	0	0	0	0	69578000	45566000	24012000	28610	1024	27079	177716	240204	240204		623	1	
KYASSANLHLPK	2	Unmodified	1327.7248	0.72483478	61	CON__P34955			yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			28.698	27.345	3	0.025538	22625	160511_QHF_FH_JSI10i_3	27.672	18.16		+	1.1304	1.0771	18.352	2	0	Median	1.5134	1.2264	NaN	1	0	Median	0.84428	0.94605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61145000	29735000	31410000	38689000	17356000	21332000	22457000	12379000	10078000	0	0	0	0	0	0	28611	61	27080	177717;177718	240205;240206;240207;240208	240205			4	
KYAVLYQPLFDK	2	Acetyl (K)	1525.8181	0.81806646	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		84.377	74.301	2	5.4606E-07	40967	160513_QHF_FH_JSI11Kac_6	109.6	92.573			0.22199	0.21033	116.93	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4455	1.7297	NaN	1	0	Median	0.23866	0.22952	12.348	2	0	Median	NaN	NaN	NaN	0	0	Median	242660000	200030000	42627000	0	0	0	2357400	1009800	1347600	240300000	199020000	41279000	0	0	0	28612	1852	27081	177719;177720;177721	240209;240210;240211;240212;240213;240214	240209	1867;1868		6	
KYDAFLASESLIK	2	Unmodified	1483.7922	0.79224564	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		8	6						8	5	5	6	6	70.853	67.208	2;3	5.4664E-31	58777	160511_QHF_FH_JSI12i_3	193.81	150.04			0.97036	0.96132	20.065	22	1	Median	1.0306	0.88823	12.561	5	0	Median	0.86375	1.0172	18.662	5	1	Median	0.93241	0.94208	22.671	6	0	Median	0.93442	0.99352	21.374	6	0	Median	17756000000	7740200000	10016000000	1925900000	861000000	1064900000	3041100000	1777900000	1263200000	5611000000	2198400000	3412600000	7178000000	2902900000	4275100000	28613	2036	27082	177722;177723;177724;177725;177726;177727;177728;177729;177730;177731;177732;177733;177734;177735;177736;177737;177738;177739;177740;177741;177742;177743	240215;240216;240217;240218;240219;240220;240221;240222;240223;240224;240225;240226;240227;240228;240229;240230;240231;240232;240233;240234;240235;240236;240237;240238;240239;240240;240241;240242;240243;240244;240245;240246;240247;240248;240249;240250;240251;240252;240253;240254;240255;240256;240257;240258;240259;240260;240261;240262;240263;240264;240265;240266	240258			52	
KYDAFLASESLIK	2	Acetyl (K)	1525.8028	0.80281033	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	83.754	73.293	2	0.00013754	38668	160513_QHF_FH_JSI11Kac_5	100.55	85.992			0.86694	0.95352	30.352	6	0	Median	1.2013	0.98802	NaN	1	0	Median	0.87579	1.0299	0.70666	2	0	Median	0.47577	0.46849	NaN	1	0	Median	0.79349	0.85944	9.6649	2	0	Median	49300000	30232000	19067000	1940700	1002100	938570	9691900	4928800	4763200	30293000	20311000	9981400	7374200	3990000	3384200	28614	2036	27082	177744;177745;177746;177747;177748;177749	240267;240268;240269;240270;240271;240272;240273	240270	2083;2084		7	
KYDAFLASESLIKQIPR	2	Acetyl (K)	2020.0993	0.099326699	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.824	77.563	3	8.8415E-07	41196	160513_QHF_FH_JSI12Kac_6	107.57	89.708			0.89695	0.85502	197.73	4	2	Median	1.0352	0.87782	NaN	1	0	Median	7.9032	9.138	NaN	1	1	Median	0.073957	0.072064	NaN	1	1	Median	0.77716	0.83281	NaN	1	0	Median	272990000	154570000	118410000	41911000	16425000	25486000	56259000	7387200	48872000	86863000	84423000	2439900	87952000	46336000	41616000	28615	2036	27083	177750;177751;177752;177753	240274;240275;240276	240275	2083;2084		3	
KYDDDISPSEDK	2	Unmodified	1410.6151	0.61506914	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	1	By MS/MS				1	0	2									2				19.169	18.039	2	0.00080117	15113	160511_QHF_FH_JSI9i_1	87.363	59.621			2.046	1.6421	NaN	1	1	Median	2.046	1.6421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13042000	5075300	7966200	13042000	5075300	7966200	0	0	0	0	0	0	0	0	0	28616	2258	27084	177754;177755	240277;240278	240277			2	
KYDDVTEK	2	Unmodified	996.47639	0.47639081	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		1	2	8.4985	8.084	2	0.0010685	5745	160511_QHF_FH_JSI12i_2	101.65	47.489			0.73587	0.7274	20.956	4	1	Median	0.90545	0.7588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72062	0.6973	NaN	1	0	Median	0.61104	0.65468	34.218	2	1	Median	424680000	245290000	179390000	73533000	41282000	32251000	0	0	0	148930000	80596000	68334000	202210000	123410000	78808000	28617	1741	27085	177756;177757;177758;177759	240279;240280;240281;240282;240283	240280			5	
KYDDVTEK	2	Acetyl (K)	1038.487	0.4869555	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		20.73	13.267	2	0.019608	8981	160513_QHF_FH_JSI11Kac_3	73.233	45.979			2.8287	2.7286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8287	2.7286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7296500	1985300	5311300	0	0	0	0	0	0	7296500	1985300	5311300	0	0	0	28618	1741	27085	177760	240284	240284	1754		1	
KYDEAIK	2	Unmodified	865.45453	0.45453316	4518;3068	Q9BXJ9;Q6N069	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	10.163	9.6872	2	0.01935	7155	160511_QHF_FH_JSI11i_2	58.981	22.585			0.9041	0.93312	13.733	4	0	Median	0.96856	0.82869	NaN	1	0	Median	0.74511	0.92536	NaN	1	0	Median	1.1462	1.1522	NaN	1	0	Median	0.84393	0.94095	NaN	1	0	Median	422100000	219720000	202380000	80494000	32129000	48365000	110280000	62228000	48049000	132480000	63825000	68660000	98847000	61543000	37305000	28619	4518;3068	27086	177761;177762;177763;177764	240285;240286;240287;240288;240289;240290;240291	240288			7	
KYDEVLHMVR	1	Unmodified	1288.6598	0.65979168	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								1	3	4	38.847	38.636	2;3;4	3.4435E-05	32674	160511_QHF_FH_JSI12i_3	96.009	81.071			1.1336	1.1335	13.94	8	4	Median	NaN	NaN	NaN	0	0	Median	0.9032	1.1043	NaN	1	1	Median	1.3297	1.2557	5.7999	3	1	Median	1.0368	1.0474	19.253	4	2	Median	1222100000	534720000	687340000	0	0	0	43795000	25355000	18440000	376050000	155570000	220480000	802210000	353790000	448420000	28620	1805	27087	177765;177766;177767;177768;177769;177770;177771;177772	240292;240293;240294;240295;240296;240297;240298	240296			7	
KYDEVLHMVR	1	Acetyl (K)	1330.6704	0.67035637	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		59.832	50.113	2;3	0.0022515	27091	160513_QHF_FH_JSI11Kac_6	85.533	59.019			0.72192	0.69191	116.7	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72192	0.69191	116.7	2	1	Median	NaN	NaN	NaN	0	0	Median	79519000	58626000	20893000	0	0	0	0	0	0	79519000	58626000	20893000	0	0	0	28621	1805	27087	177773;177774	240299;240300	240300	1823		2	
KYDGYAR	1	Unmodified	871.41882	0.41881635	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		7.5273	7.0065	3	0.020797	4708	160511_QHF_FH_JSI11i_3	34.931	11.408			2.4839	2.8998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4839	2.8998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	229990000	49349000	180640000	0	0	0	229990000	49349000	180640000	0	0	0	0	0	0	28622	2332	27088	177775;177776	240301;240302	240301			2	
KYDTVLDILR	1	Unmodified	1234.6921	0.69213767	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	3	2	72.424	71.842	2;3	1.2814E-06	62261	160511_QHF_FH_JSI12i_3	96.015	69.342			0.87836	0.90772	17.115	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79017	0.88756	7.3031	2	0	Median	1.2867	1.214	8.5142	2	0	Median	0.87836	0.88119	0.066816	2	0	Median	359470000	179230000	180240000	0	0	0	50613000	30741000	19872000	166570000	78788000	87785000	142280000	69701000	72583000	28623	999	27089	177777;177778;177779;177780;177781;177782;177783	240303;240304;240305;240306;240307;240308;240309;240310;240311;240312;240313;240314	240312			12	
KYDVDTLDMVFLDHWK	2	Unmodified	2023.9713	0.97134899	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	6.55	5.79			8						3	1		2	8	95.886	93.147	3;4	5.8065E-06	85473	160511_QHF_FH_JSI12i_3	110.22	100.8			0.99404	1.0373	51.103	10	4	Median	0.916	0.7831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4.1159	3.9045	NaN	1	1	Median	0.99404	1.0373	26.472	8	3	Median	470280000	263310000	206970000	21921000	11989000	9931700	0	0	0	24739000	2475100	22264000	423620000	248850000	174770000	28624	1199	27090	177784;177785;177786;177787;177788;177789;177790;177791;177792;177793;177794	240315;240316;240317;240318;240319;240320;240321;240322;240323;240324;240325;240326	240318			12	
KYDYDSSSVR	1	Unmodified	1218.5517	0.55168102	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	14.557	14.589	2;3	0.0050222	11790	160511_QHF_FH_JSI11i_3	54.608	41.571			1.1191	1.1009	12.151	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1764	1.1065	3.2505	2	0	Median	0.96567	0.98991	17.562	2	0	Median	208030000	98874000	109150000	0	0	0	0	0	0	106150000	48358000	57796000	101870000	50516000	51357000	28625	4260	27091	177795;177796;177797;177798	240327;240328;240329;240330;240331;240332	240327			6	
KYDYDSSSVRK	2	Unmodified	1346.6466	0.64664404	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			13.348	12.499	3	0.017012	9919	160511_QHF_FH_JSI9i_3	43.382	35.658			0.8444	0.85131	41.554	3	0	Plateau	0.72092	0.58884	52.131	2	0	Median	0.67878	0.82089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217580000	129200000	88381000	133390000	72359000	61033000	84186000	56838000	27348000	0	0	0	0	0	0	28626	4260	27092	177799;177800;177801	240333;240334;240335	240335			3	
KYDYDSSSVRK	2	Acetyl (K)	1388.6572	0.65720872	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		26.177	16.711	3	0.03878	10954	160513_QHF_FH_JSI11Kac_5	42.789	29.109			0.46738	0.46075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46738	0.46075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9312700	5903100	3409700	0	0	0	0	0	0	9312700	5903100	3409700	0	0	0	28627	4260	27092	177802	240336	240336			1	
KYEAAYGK	2	Unmodified	928.46543	0.46543219	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	3	3	8.8192	8.5606	2;3	0.002416	5818	160511_QHF_FH_JSI12i_3	55.549	39.887			0.81669	0.82739	19.518	9	1	Median	0.91738	0.779	32.534	2	0	Median	0.54616	0.67042	NaN	1	0	Median	0.71635	0.7244	21.964	3	1	Median	0.84226	0.84908	10.134	3	0	Plateau	2352600000	1199100000	1153500000	213530000	109070000	104460000	131850000	79410000	52436000	628530000	346190000	282340000	1378700000	664430000	714230000	28628	1507	27093	177803;177804;177805;177806;177807;177808;177809;177810;177811	240337;240338;240339;240340;240341;240342	240342			6	
KYEAFLNK	2	Unmodified	1011.5389	0.53893149	5297	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				27.85	26.481	2	0.060971	21519	160511_QHF_FH_JSI9i_3	49.423	27.895			2.5002	2.019	NaN	1	1	Median	2.5002	2.019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24126000	5573300	18553000	24126000	5573300	18553000	0	0	0	0	0	0	0	0	0	28629	5297	27094	177812	240343	240343			1	
KYEAIQLTFK	2	Unmodified	1239.6863	0.68632401	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	5.6	5.2			4						1	1	3		1	55.584	52.928	2;3	0.00052752	45006	160511_QHF_FH_JSI12i_3	72.096	39.741			0.647	0.77896	39.802	5	1	Median	1.0266	0.83201	NaN	1	0	Median	0.4043	0.47307	41.572	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.94977	0.97721	NaN	1	0	Median	324150000	179620000	144530000	25812000	10561000	15251000	112640000	75803000	36838000	0	0	0	185690000	93253000	92442000	28630	5479	27095	177813;177814;177815;177816;177817	240344;240345;240346;240347;240348;240349	240348			6	
KYEDICPSTHNMDVPNIK	2	Oxidation (M)	2175.9929	0.99288907	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	39.088	38.696	3;4	3.148E-07	32675	160511_QHF_FH_JSI12i_3	110.77	101.84			0.9506	1.1007	17.272	7	1	Median	NaN	NaN	NaN	0	0	Median	0.92664	1.1202	2.473	2	1	Median	0.81171	0.77433	19.319	3	0	Plateau	1.0841	1.1157	8.3271	2	0	Median	1867500000	944340000	923180000	0	0	0	142830000	76565000	66264000	757790000	393090000	364700000	966900000	474690000	492220000	28631	2060	27096	177818;177819;177820;177821;177822;177823;177824	240350;240351;240352;240353;240354;240355;240356;240357;240358;240359;240360;240361;240362;240363;240364;240365	240362		1722	16	
KYEDICPSTHNMDVPNIK	2	Unmodified	2159.998	0.99797445	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		9	12						3	4	5	8	7	50.371	48.826	2;3;4	1.3718E-23	42843	160511_QHF_FH_JSI11i_3	178.88	174.12			0.92602	0.99487	16.11	22	6	Median	1.2073	1.0138	18.944	4	2	Median	0.83586	0.99247	7.7081	4	0	Median	0.80667	0.78637	13.6	8	2	Median	0.95445	1.015	11.724	6	2	Median	19099000000	9358700000	9740800000	781310000	346330000	434980000	1562400000	836720000	725700000	9039200000	4945200000	4094000000	7716500000	3230400000	4486100000	28632	2060	27096	177825;177826;177827;177828;177829;177830;177831;177832;177833;177834;177835;177836;177837;177838;177839;177840;177841;177842;177843;177844;177845;177846;177847;177848	240366;240367;240368;240369;240370;240371;240372;240373;240374;240375;240376;240377;240378;240379;240380;240381;240382;240383;240384;240385;240386;240387;240388;240389;240390;240391;240392;240393;240394;240395;240396;240397;240398;240399;240400;240401;240402;240403;240404;240405;240406;240407;240408;240409;240410;240411	240366			46	
KYEEIDNAPEER	1	Unmodified	1491.6842	0.68415175	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							5	4	5	6	20.299	19.713	2;3	4.4763E-42	16076	160511_QHF_FH_JSI12i_2	167.71	158.52			0.98134	0.98355	12.535	20	1	Median	1.1936	1.0181	16.427	5	1	Median	0.75548	0.90177	11.723	4	0	Median	1.0307	1.0109	10.692	5	0	Median	0.95246	0.99648	7.7716	6	0	Median	5148800000	2492000000	2656800000	730880000	327710000	403170000	1106800000	627090000	479750000	1442300000	698020000	744320000	1868700000	839180000	1029500000	28633	1658	27097	177849;177850;177851;177852;177853;177854;177855;177856;177857;177858;177859;177860;177861;177862;177863;177864;177865;177866;177867;177868	240412;240413;240414;240415;240416;240417;240418;240419;240420;240421;240422;240423;240424;240425;240426;240427;240428;240429;240430;240431;240432;240433;240434;240435;240436;240437;240438;240439;240440;240441;240442;240443;240444	240417			33	
KYEEIDNAPEER	1	Acetyl (K)	1533.6947	0.69471644	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4				1	2	2	1	34.97	24.681	2	1.7292E-38	16360	160513_QHF_FH_JSI10Kac_3	193.85	156.37			0.82034	0.93791	34.613	6	0	Median	1.2283	1.0162	NaN	1	0	Median	0.92983	1.0972	10.101	2	0	Median	0.5488	0.53338	1.9435	2	0	Median	0.78953	0.86567	NaN	1	0	Median	188340000	103610000	84722000	56192000	25588000	30603000	37238000	19443000	17795000	59107000	39510000	19597000	35799000	19072000	16727000	28634	1658	27097	177869;177870;177871;177872;177873;177874	240445;240446;240447;240448;240449	240449	1679		5	
KYEENPLHFLMGVWGSAFSILFNR	1	Unmodified	2854.4265	0.42649127	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			102.3	96.575	3;4	8.3394E-65	57074	160513_QHF_FH_JSI10Kac_6	200.98	177.77			0.65067	0.75831	19.231	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65067	0.75831	19.231	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160030000	99327000	60707000	0	0	0	160030000	99327000	60707000	0	0	0	0	0	0	28635	1604	27098	177875;177876	240450;240451	240451			2	
KYEEVAR	1	Unmodified	893.46068	0.46068117	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	3	3	6.9006	6.6633	2;3	0.0020027	4069	160511_QHF_FH_JSI12i_3	79.469	31.62		+	0.93271	1.0893	11.64	9	0	Median	1.4023	1.1962	10.218	2	0	Median	0.90539	1.0917	NaN	1	0	Median	1.1331	1.0893	11.812	3	0	Plateau	0.93271	0.97139	3.8759	3	0	Plateau	2555100000	1331600000	1223500000	343900000	145150000	198760000	231420000	134770000	96652000	888470000	465370000	423100000	1091300000	586330000	504980000	28636	858;73;886;929;2069	27099	177877;177878;177879;177880;177881;177882;177883;177884;177885	240452;240453;240454;240455;240456;240457;240458;240459	240459			8	
KYEEVARK	2	Unmodified	1021.5556	0.55564418	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		5.7585	5.4187	3	0.0046157	3275	160511_QHF_FH_JSI11i_3	65.305	49.102		+	0.76553	0.72566	14.971	3	0	Median	1.0377	0.82475	NaN	1	0	Median	0.53584	0.61195	NaN	1	0	Median	0.76553	0.72566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2370200000	1336800000	1033400000	552230000	220180000	332040000	627170000	340890000	286280000	1190800000	775780000	415030000	0	0	0	28637	858;73;886;929;2069	27100	177886;177887;177888	240460;240461;240462;240463;240464	240460			5	
KYEFGESDLR	1	Unmodified	1242.5881	0.58806652	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	2.12	0.599	1	5	2							3	2	1	2	34.357	33.623	2;3	0.00013814	28330	160511_QHF_FH_JSI12i_3	83.869	66.629			0.84995	0.82282	17.412	8	1	Median	1.2573	1.1048	21.658	3	0	Median	0.73533	0.90224	17.612	2	1	Median	0.86385	0.84991	NaN	1	0	Median	0.75839	0.76884	3.1516	2	0	Median	588530000	319030000	269490000	126160000	54889000	71273000	148920000	77899000	71018000	54978000	31375000	23603000	258470000	154870000	103600000	28638	2517	27101	177889;177890;177891;177892;177893;177894;177895;177896	240465;240466;240467;240468;240469	240469			5	
KYEMDFGIWK	2	Unmodified	1315.6271	0.62709457	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	70.525	70.326	2;3	4.8754E-05	62705	160511_QHF_FH_JSI11i_3	81.865	73.56			1.1013	1.1036	50.77	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3747	1.2773	NaN	1	0	Median	1.7414	1.7687	66.699	2	1	Median	284310000	111960000	172350000	0	0	0	0	0	0	46768000	20243000	26525000	237540000	91715000	145830000	28639	1895	27102	177897;177898;177899	240470;240471;240472;240473;240474;240475;240476	240471			7	
KYEMFAQTLQQSR	1	Unmodified	1628.7981	0.79807608	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.08	5.74		2	7						3	5	4	3		48.971	45.71	2;3	1.4972E-22	40187	160511_QHF_FH_JSI11i_3	134.61	115.78			0.91225	0.82294	38.399	11	2	Median	1.0131	0.85232	27.134	4	0	Median	0.66792	0.77815	61.275	4	1	Median	0.72413	0.68837	11.326	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1118400000	552500000	565860000	466880000	206580000	260300000	377830000	210430000	167400000	273650000	135490000	138160000	0	0	0	28640	1846	27103	177900;177901;177902;177903;177904;177905;177906;177907;177908;177909;177910;177911	240477;240478;240479;240480;240481;240482;240483;240484;240485;240486;240487;240488;240489;240490;240491;240492;240493;240494	240479			18	
KYEMFAQTLQQSR	1	Oxidation (M)	1644.793	0.7929907	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	1	By MS/MS	By MS/MS			5.6	5.2			4						1	3	2			35.878	34.431	3	0.00046985	28139	160511_QHF_FH_JSI9i_3	63.037	51.246			1.0961	0.88759	14.295	3	1	Plateau	1.0936	0.8867	8.8798	2	0	Median	0.60303	0.70986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94811000	44504000	50307000	78069000	33656000	44412000	16743000	10848000	5894900	0	0	0	0	0	0	28641	1846	27103	177912;177913;177914;177915;177916	240495;240496;240497;240498;240499	240496		1526	4	
KYEMFAQTLQQSR	1	Acetyl (K)	1670.8086	0.80864076	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		71.323	60.522	2;3	4.2354E-14	32664	160513_QHF_FH_JSI11Kac_6	136.27	100.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1719600	1719600	0	0	0	0	0	0	0	1719600	1719600	0	0	0	0	28642	1846	27103	177917;177918	240500;240501	240500	1857		2	
KYEPPVPTR	1	Unmodified	1085.5869	0.58694431	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	23.218	22.439	2;3	0.00014451	18503	160511_QHF_FH_JSI10i_3	68.657	61.011			0.96347	0.90835	28.098	9	0	Median	1.4189	1.1748	21.983	3	0	Median	0.81357	0.90105	3.4653	3	0	Plateau	0.98034	0.92442	2.4802	2	0	Median	0.47849	0.49027	NaN	1	0	Median	1174400000	601370000	573060000	251970000	103070000	148900000	398810000	226510000	172300000	473180000	235420000	237760000	50469000	36371000	14098000	28643	1983	27104	177919;177920;177921;177922;177923;177924;177925;177926;177927	240502;240503;240504;240505;240506;240507;240508;240509;240510;240511;240512;240513	240506			12	
KYEQGFITDPVVLSPK	2	Unmodified	1819.972	0.97200092	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.31		8	5					2		2	4	5	4	68.893	66.868	2;3	8.4892E-11	57824	160511_QHF_FH_JSI12i_3	130.29	126.39			1.0008	0.98551	13.558	15	0	Median	1.0713	0.93042	1.9649	2	0	Median	0.78825	0.98563	9.4709	4	0	Linear	1.0123	0.98551	16.308	5	0	Median	0.89176	0.94738	13.875	4	0	Median	3306400000	1628400000	1678000000	289450000	130570000	158880000	469540000	274480000	195060000	1073500000	520330000	553120000	1474000000	703050000	770940000	28644	1015	27105	177928;177929;177930;177931;177932;177933;177934;177935;177936;177937;177938;177939;177940;177941;177942	240514;240515;240516;240517;240518;240519;240520;240521;240522;240523;240524;240525;240526;240527;240528;240529;240530;240531;240532;240533;240534;240535	240533			20	
KYETVIMPVFGIATPFHIATIK	2	Oxidation (M)	2491.3549	0.35488946	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	4	2	4	2	95.237	91.397	3;4	1.7142E-15	81654	160511_QHF_FH_JSI9i_3	127.8	115.84			0.88087	0.88129	14.835	12	5	Median	1.053	0.88129	15.992	4	0	Median	0.7923	0.89829	15.723	2	1	Median	0.94699	0.90461	20.024	4	3	Median	0.82881	0.85431	12.64	2	1	Median	806430000	436370000	370060000	323620000	168430000	155190000	155220000	80823000	74393000	220910000	130240000	90672000	106690000	56881000	49807000	28645	5658	27106	177943;177944;177945;177946;177947;177948;177949;177950;177951;177952;177953;177954	240536;240537;240538;240539;240540;240541;240542;240543;240544;240545;240546;240547;240548;240549;240550;240551;240552;240553;240554	240545		2726	19	
KYETVIMPVFGIATPFHIATIK	2	Unmodified	2475.36	0.35997484	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			6						10	4	3	4	5	95.536	90.165	3;4	2.7798E-15	87925	160511_QHF_FH_JSI12i_3	131.26	122.9			0.94943	0.94765	34.523	16	8	Median	1.0987	0.94863	10.085	4	1	Median	0.72957	0.83124	73.514	3	1	Median	0.91985	0.86667	10.332	4	3	Median	0.94224	0.99308	9.4899	5	3	Median	9748200000	4993800000	4754400000	1002700000	391760000	610940000	2225000000	1403100000	821860000	2006400000	992640000	1013800000	4514100000	2206300000	2307800000	28646	5658	27106	177955;177956;177957;177958;177959;177960;177961;177962;177963;177964;177965;177966;177967;177968;177969;177970	240555;240556;240557;240558;240559;240560;240561;240562;240563;240564;240565;240566;240567;240568;240569;240570;240571;240572;240573;240574;240575;240576;240577;240578	240571			24	
KYETVQDILK	2	Unmodified	1235.6762	0.67615325	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	48.768	48.53	2	0.0043279	41527	160511_QHF_FH_JSI12i_3	63.073	29.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28647	2197	27107	177971	240579	240579			1	
KYFEEYALVNQDILENK	2	Unmodified	2115.0524	0.052436086	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		77.034	77.034	3	0.00047386	68865	160511_QHF_FH_JSI11i_3	63.337	48.415			0.1582	0.14646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1582	0.14646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13995000	10950000	3044600	0	0	0	0	0	0	13995000	10950000	3044600	0	0	0	28648	1669	27108	177972	240580	240580			1	
KYFNSYTLTGR	1	Acetyl (K)	1390.6881	0.68811492	4128	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.965	54.28	2	3.2406E-08	29390	160513_QHF_FH_JSI11Kac_6	120.68	94.744			0.25833	0.2517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25833	0.2517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32385000	25692000	6693400	0	0	0	0	0	0	32385000	25692000	6693400	0	0	0	28649	4128	27109	177973	240581	240581	3047		1	
KYGDIPEYVLAYIDYLSHLNEDNNTR	1	Unmodified	3114.4934	0.49344444	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.552	91.831	4	0.0010963	53486	160513_QHF_FH_JSI10Kac_6	48.18	42.019			0.64569	0.75132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64569	0.75132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80958000	43473000	37486000	0	0	0	80958000	43473000	37486000	0	0	0	0	0	0	28650	2338	27110	177974	240582	240582			0	
KYGEFFPVPESILTSMK	2	Unmodified	1972.0016	0.0015864895	5282	Q9UGM6	WARS2	Tryptophan--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	100.41	100.36	3	7.6825E-05	86780	160511_QHF_FH_JSI12i_3	68.129	61.355			0.98012	1.042	3.1103	3	1	Median	NaN	NaN	NaN	0	0	Median	0.91696	1.042	NaN	1	1	Median	1.1047	1.061	NaN	1	0	Median	0.98012	0.9986	NaN	1	0	Median	175430000	91873000	83555000	0	0	0	23427000	13792000	9635200	55046000	27559000	27487000	96956000	50523000	46433000	28651	5282	27111	177975;177976;177977	240583;240584;240585;240586;240587	240587			5	
KYGETANECGEAFFFYGK	2	Unmodified	2116.92	0.9200417	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.973	64.683	3	3.9343E-06	55962	160511_QHF_FH_JSI12i_3	92.307	84.019			1.4303	1.3992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4303	1.3992	NaN	1	0	Median	127450000	46370000	81084000	0	0	0	0	0	0	0	0	0	127450000	46370000	81084000	28652	1649	27112	177978	240588	240588			1	
KYGIVLK	2	Unmodified	819.52182	0.52182486	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			5							1	1	1	2	28.155	27.599	3	0.018878	23479	160511_QHF_FH_JSI11i_3	37.558	7.3733			1.1912	1.3755	69.792	5	1	Median	0.69626	0.5618	NaN	1	0	Median	1.1912	1.3755	NaN	1	0	Median	1.565	1.4714	NaN	1	0	Median	1.5692	1.5869	107.7	2	1	Median	416050000	174380000	241670000	84457000	36603000	47854000	66574000	28459000	38116000	85083000	38245000	46838000	179930000	71076000	108860000	28653	1432	27113	177979;177980;177981;177982;177983	240589;240590;240591	240589			3	
KYGLKPPTL	2	Unmodified	1015.6066	0.60661712	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	43.4	42.558	3	0.0056633	35182	160511_QHF_FH_JSI9i_3	56.729	56.729			1.177	1.0802	8.1111	4	0	Median	1.3003	1.0399	NaN	1	0	Median	0.95519	1.092	NaN	1	0	Median	1.1344	1.0685	NaN	1	0	Median	1.2211	1.2482	NaN	1	0	Median	786740000	410910000	375830000	209650000	92017000	117630000	153180000	84800000	68382000	132900000	66728000	66170000	291010000	167360000	123650000	28654	611	27114	177984;177985;177986;177987	240592;240593;240594;240595;240596;240597;240598	240594			7	
KYGNANVWK	2	Acetyl (K)	1120.5665	0.56654322	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		42.134	32.229	2	0.0006674	18448	160513_QHF_FH_JSI11Kac_5	116.37	80.491			0.2023	0.19849	6.7362	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2023	0.19849	6.7362	2	0	Median	NaN	NaN	NaN	0	0	Median	22652000	18941000	3710700	0	0	0	0	0	0	22652000	18941000	3710700	0	0	0	28655	2014;2065	27115	177988;177989	240599;240600	240600	2045		2	
KYGPFVADFADK	2	Unmodified	1356.6714	0.67140222	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	57.402	56.547	2;3	1.6045E-05	48335	160511_QHF_FH_JSI12i_3	81.494	73.583			0.86173	0.84903	8.9681	10	2	Median	1.0521	0.84085	11.769	3	1	Median	0.7385	0.80133	10.937	3	1	Plateau	0.99318	0.94629	0.32372	2	0	Median	0.8073	0.83916	3.025	2	0	Median	2676300000	1299900000	1376400000	524520000	234650000	289870000	587280000	307400000	279880000	717040000	343570000	373470000	847460000	414260000	433190000	28656	1246	27116	177990;177991;177992;177993;177994;177995;177996;177997;177998;177999	240601;240602;240603;240604;240605;240606;240607;240608;240609;240610;240611;240612;240613;240614;240615;240616;240617;240618;240619;240620;240621;240622;240623;240624;240625;240626	240625			26	
KYGPFVADFADK	2	Acetyl (K)	1398.682	0.68196691	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		78.784	68.27	2	0.00041196	36216	160513_QHF_FH_JSI11Kac_5	91.313	68.573			1.0115	1.2001	94.532	3	0	Median	NaN	NaN	NaN	0	0	Median	1.139	1.3468	16.316	2	0	Median	0.26932	0.26518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46533000	34564000	11969000	0	0	0	8987300	3903200	5084000	37546000	30661000	6885000	0	0	0	28657	1246	27116	178000;178001;178002	240627;240628;240629	240627	1143		3	
KYGQPIQMK	2	Unmodified	1091.5798	0.57975044	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	20.226	19.321	2;3	0.014796	15978	160511_QHF_FH_JSI10i_3	53.166	36.39			1.2434	1.1484	103.88	4	4	Median	1.5671	1.2642	112.09	2	2	Median	0.28835	0.33664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1648	2.3045	NaN	1	1	Median	223330000	97727000	125610000	145070000	50235000	94831000	57486000	42107000	15380000	0	0	0	20782000	5385400	15397000	28658	723	27117	178003;178004;178005;178006;178007	240630;240631;240632;240633;240634	240631			5	
KYGTCPHGGYGLGLER	1	Acetyl (K)	1805.8519	0.85190256	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.61	41.89	3	0.0042586	22738	160513_QHF_FH_JSI11Kac_6	71.872	65.968			0.25382	0.24852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25382	0.24852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23830000	18384000	5446400	0	0	0	0	0	0	23830000	18384000	5446400	0	0	0	28659	375	27118	178008	240635	240635	193		1	
KYGVAWEK	2	Unmodified	979.51272	0.51271674	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	25.477	25.017	3	0.0064576	20646	160511_QHF_FH_JSI12i_3	50.04	37.003			0.68713	0.69412	45.437	3	3	Median	0.54309	0.44013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1824	1.0921	NaN	1	1	Median	0.68713	0.69412	NaN	1	1	Median	364810000	211660000	153150000	63392000	37991000	25401000	0	0	0	90201000	47974000	42227000	211220000	125690000	85525000	28660	2571	27119	178009;178010;178011	240636;240637;240638	240638			3	
KYGVAWEK	2	Acetyl (K)	1021.5233	0.52328142	2571	Q14739	LBR	Lamin-B receptor	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	50.488	40.09	2	0.037144	20797	160513_QHF_FH_JSI12Kac_5	82.452	46.267			0.96385	1.0545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96385	1.0545	NaN	1	0	Median	13074000	6377600	6696100	0	0	0	0	0	0	0	0	0	13074000	6377600	6696100	28661	2571	27119	178012	240639	240639	2544		1	
KYGVDLIR	1	Unmodified	962.55492	0.5549159	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			8							2	2	2	2	37.067	36.294	2;3	0.00068879	29607	160511_QHF_FH_JSI9i_3	69.825	42.571			0.99945	0.9317	23.626	8	0	Median	1.1571	0.94887	4.705	2	0	Median	0.69059	0.80453	13.505	2	0	Median	1.5102	1.411	5.3909	2	0	Median	0.86406	0.89481	7.837	2	0	Median	776930000	391860000	385070000	210470000	99024000	111440000	212600000	116770000	95834000	211400000	94502000	116900000	142450000	81565000	60885000	28662	3159	27120	178013;178014;178015;178016;178017;178018;178019;178020	240640;240641;240642;240643;240644;240645	240645			6	
KYHLMQFAEVTR	1	Unmodified	1521.7762	0.77621842	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			57.35	48.867	3	0.0019772	26924	160513_QHF_FH_JSI10Kac_6	60.157	46.753			0.96261	1.1636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96261	1.1636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26320000	10728000	15592000	0	0	0	26320000	10728000	15592000	0	0	0	0	0	0	28663	2909	27121	178021;178022	240646;240647	240646			1	
KYHNVGLSK	2	Unmodified	1044.5716	0.5716286	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	9.8842	9.5722	2;3	0.00023418	7760	160511_QHF_FH_JSI9i_3	84.615	59.721			0.81177	0.71957	61.052	8	2	Median	0.98441	0.79977	0.74474	2	0	Median	0.55267	0.63343	3.5704	2	0	Median	0.3432	0.33318	94.691	2	2	Median	1.1854	1.1904	7.3879	2	0	Median	3440200000	1944200000	1495900000	773110000	303410000	469700000	687380000	356360000	331020000	1153700000	920800000	232950000	825940000	363660000	462280000	28664	2488	27122	178023;178024;178025;178026;178027;178028;178029;178030	240648;240649;240650;240651;240652;240653;240654;240655;240656;240657;240658;240659;240660;240661;240662;240663;240664;240665;240666	240662			19	
KYHNVGLSK	2	Acetyl (K)	1086.5822	0.58219329	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	21.92	13.817	2;3	0.0021195	8104	160513_QHF_FH_JSI12Kac_6	92.538	67.763			0.32343	0.32634	68.221	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97502	1.1393	NaN	1	0	Median	0.27955	0.27025	4.7547	2	0	Median	0.36381	0.38104	NaN	1	0	Median	227650000	133900000	93748000	0	0	0	49981000	20394000	29587000	145270000	91877000	53395000	32394000	21627000	10767000	28665	2488	27122	178031;178032;178033;178034	240667;240668;240669;240670;240671;240672	240671	2498		6	
KYHPDTNK	2	Unmodified	1001.493	0.49304393	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS			By matching	3	0			2							1			1	4.6739	4.4704	3	0.012904	2240	160511_QHF_FH_JSI9i_3	30.593	16.132			0.52033	0.48937	97.168	2	0	Median	1.1629	0.97282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23282	0.24617	NaN	1	0	Median	161550000	95729000	65816000	102860000	43517000	59340000	0	0	0	0	0	0	58689000	52212000	6476500	28666	4062	27123	178035;178036	240673	240673			1	
KYIDNPK	2	Unmodified	876.47052	0.47051757	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	9.1943	8.9002	2	0.0173	6312	160511_QHF_FH_JSI12i_3	67.981	36.691			0.50584	0.51942	51.463	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64755	0.7474	NaN	1	1	Median	0.39514	0.36098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159460000	95186000	64277000	0	0	0	67092000	38769000	28324000	92371000	56417000	35954000	0	0	0	28667	3828	27124	178037;178038;178039	240674;240675;240676	240676			3	
KYIHVAK	2	Unmodified	857.51232	0.51232281	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	9.752	9.3361	3	0.015648	7578	160511_QHF_FH_JSI10i_3	40.103	17.084			0.9228	0.73948	102.7	3	1	Median	0.9228	0.73948	NaN	1	0	Median	0.46358	0.52434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.5623	3.5968	NaN	1	1	Median	361700000	167490000	194210000	92881000	45194000	47687000	129710000	86243000	43468000	0	0	0	139110000	36052000	103050000	28668	1254	27125	178040;178041;178042	240677;240678;240679;240680	240677			4	
KYIIYAK	2	Unmodified	897.53239	0.53238955	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	2	3	28.499	24.777	2;3	0.0070997	20016	160511_QHF_FH_JSI9i_3	49.358	20.209			0.96728	0.91335	18.46	11	1	Median	1.1399	0.91335	3.5793	3	0	Median	0.75037	0.85464	2.0067	3	0	Median	1.1613	1.1014	21.021	2	1	Median	0.92771	0.95172	32.375	3	0	Median	1603800000	778160000	825620000	474410000	212590000	261820000	363440000	186390000	177050000	175900000	91651000	84249000	590020000	287530000	302490000	28669	1674	27126	178043;178044;178045;178046;178047;178048;178049;178050;178051;178052;178053	240681;240682;240683;240684;240685;240686;240687;240688;240689	240683			9	
KYIIYAK	2	Acetyl (K)	939.54295	0.54295423	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.911	42.196	2	0.047641	23466	160513_QHF_FH_JSI11Kac_5	94.407	37.126			0.25717	0.25591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25717	0.25591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21223000	17581000	3641100	0	0	0	0	0	0	21223000	17581000	3641100	0	0	0	28670	1674	27126	178054	240690	240690			1	
KYIPGTK	2	Unmodified	805.46979	0.46978929	2143	P99999;CON__P62894	CYCS	Cytochrome c	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	10.547	10.115	2;3	0.019554	7743	160511_QHF_FH_JSI10i_3	40.268	26.111			0.89189	0.9293	20.764	4	0	Median	1.3117	1.142	NaN	1	0	Median	0.84507	0.91366	NaN	1	0	Median	0.72728	0.69032	NaN	1	0	Median	0.9413	0.94521	NaN	1	0	Median	18672000000	8641400000	10031000000	5055200000	2073600000	2981600000	4934400000	2037300000	2897200000	3558400000	1943400000	1614900000	5124200000	2587100000	2537100000	28671	2143	27127	178055;178056;178057;178058;178059;178060	240691;240692;240693;240694	240693			4	
KYIQAEPPTNK	2	Acetyl (K)	1329.6929	0.69286595	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	41.587	32.652	2	9.6815E-05	17784	160513_QHF_FH_JSI10Kac_3	100.48	63.001			0.55995	0.56436	160.77	3	1	Plateau	NaN	NaN	NaN	0	0	Median	8.737	10.096	NaN	1	1	Median	0.55995	0.56436	NaN	1	0	Median	0.63515	0.69714	NaN	1	0	Median	12870000	6050100	6819900	0	0	0	2106600	197310	1909200	5602900	3077900	2525000	5160500	2774900	2385600	28672	3685	27128	178061;178062;178063;178064	240695;240696;240697;240698;240699	240699	2912		5	
KYIQAEPPTNK	2	Unmodified	1287.6823	0.68230126	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	20.098	18.861	3	0.022573	15343	160511_QHF_FH_JSI12i_3	30.563	16.306			1.0844	0.88503	NaN	1	0	Median	1.0844	0.88503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20277000	8153500	12123000	20277000	8153500	12123000	0	0	0	0	0	0	0	0	0	28673	3685	27128	178065;178066	240700;240701	240701			2	
KYLHPSSYTK	2	Acetyl (K)	1264.6452	0.64518747	2454	Q13617	CUL2	Cullin-2	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									3		1	2		31.648	22.725	2;3	0.0095093	12919	160513_QHF_FH_JSI11Kac_6	73.666	62.098			0.24737	0.24472	115.61	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4779	1.7528	NaN	1	0	Median	0.24386	0.23684	4.63	2	0	Median	NaN	NaN	NaN	0	0	Median	30023000	19977000	10047000	0	0	0	7737200	3278200	4459000	22286000	16698000	5587700	0	0	0	28674	2454	27129	178067;178068;178069	240702;240703	240703	2484		2	
KYLLQEQLK	2	Acetyl (K)	1203.6863	0.68632401	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							2	2			2	2		65.599	54.761	2	0.0009725	30641	160513_QHF_FH_JSI11Kac_4	110.87	63.674			0.34508	0.34162	84.34	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1603	1.3743	NaN	1	0	Median	0.32355	0.32026	9.1289	2	0	Median	NaN	NaN	NaN	0	0	Median	52098000	35726000	16373000	0	0	0	16421000	9640800	6780700	35677000	26085000	9592100	0	0	0	28675	1459	27130	178070;178071;178072;178073	240704;240705;240706;240707;240708;240709;240710	240706	1442		7	
KYMEENDQLK	2	Unmodified	1296.602	0.60200203	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.44	0.497		5	4							2		4	3	16.848	16.507	2;3	1.2863E-08	13106	160511_QHF_FH_JSI12i_3	103.18	90.748			1.0881	1.0795	35.403	9	5	Median	0.9823	0.84571	61.593	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2917	1.2013	42.01	4	3	Median	1.0726	1.0523	11.746	3	0	Plateau	583330000	305660000	277670000	79832000	37037000	42795000	0	0	0	240330000	131150000	109180000	263170000	137470000	125690000	28676	1741	27131	178074;178075;178076;178077;178078;178079;178080;178081;178082	240711;240712;240713;240714;240715;240716;240717;240718;240719;240720	240720			9	
KYMEENDQLK	2	Acetyl (K);Oxidation (M)	1354.6075	0.60748134	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	1	0	1	1			By MS/MS	By MS/MS	13	0						2						1	1	26.146	18.698	2	0.016735	11557	160513_QHF_FH_JSI11Kac_3	48.796	21.681			0.4314	0.44333	37.51	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35363	0.34005	NaN	1	0	Median	0.52627	0.57799	NaN	1	0	Median	9229100	6776400	2452800	0	0	0	0	0	0	6927200	5267700	1659500	2301900	1508600	793270	28677	1741	27131	178083;178084	240721	240721	1755	1426	1	
KYMEENDQLK	2	Oxidation (M)	1312.5969	0.59691665	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	16.408	16.459	3	0.023346	13113	160511_QHF_FH_JSI12i_3	31.136	6.6364			1.6125	1.5077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6125	1.5077	NaN	1	0	Median	31990000	12207000	19783000	0	0	0	0	0	0	0	0	0	31990000	12207000	19783000	28678	1741	27131	178085	240722	240722		1426	1	
KYNALVMSAFNNDAGFVAALDK	2	Unmodified	2358.1678	0.16781697	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			99.322	99.12	3	0.0027749	81996	160511_QHF_FH_JSI10i_3	40.012	30.965			2.4309	2.8313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4309	2.8313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10221000	3060000	7160900	0	0	0	10221000	3060000	7160900	0	0	0	0	0	0	28679	2453	27132	178086	240723	240723			1	
KYNILGTNAIMDK	2	Unmodified	1479.7755	0.77554972	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	56.493	55.658	2;3	8.4085E-07	45976	160511_QHF_FH_JSI9i_3	130.01	92.53			0.82124	0.87983	12.182	8	0	Median	1.1308	0.91165	3.0192	2	0	Median	0.80899	0.94656	2.1269	2	0	Median	0.86277	0.81454	8.8983	2	0	Median	0.69392	0.71645	1.4972	2	0	Median	1313000000	701710000	611270000	291580000	149120000	142460000	392700000	213850000	178850000	397350000	195220000	202130000	231360000	143530000	87827000	28680	4442	27133	178087;178088;178089;178090;178091;178092;178093;178094	240724;240725;240726;240727;240728;240729;240730;240731;240732;240733;240734;240735;240736;240737;240738;240739;240740;240741;240742;240743;240744;240745	240741			22	
KYNILGTNAIMDK	2	Oxidation (M)	1495.7705	0.77046434	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			46.565	44.979	3	0.000108	37540	160511_QHF_FH_JSI10i_3	71.879	66.8			0.97658	0.93257	2.599	2	0	Median	1.1674	0.94987	NaN	1	0	Median	0.81694	0.91559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100330000	50282000	50052000	60094000	26379000	33715000	40240000	23904000	16337000	0	0	0	0	0	0	28681	4442	27133	178095;178096	240746;240747	240746		2473	2	
KYNILGTNAIMDK	2	Acetyl (K)	1521.7861	0.78611441	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.168	67.558	2	0.022731	35905	160513_QHF_FH_JSI11Kac_5	60.434	33.761			0.074626	0.072943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074626	0.072943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2020200	1978700	41533	0	0	0	0	0	0	2020200	1978700	41533	0	0	0	28682	4442	27133	178097	240748	240748	3159		1	
KYNILGTNAIMDK	2	Acetyl (K);Oxidation (M)	1537.781	0.78102903	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		70.75	59.917	2	0.039193	32163	160513_QHF_FH_JSI11Kac_5	48.44	13.719			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28683	4442	27133	178098	240749	240749	3159	2473	1	
KYNIMAFNAADK	2	Unmodified	1384.6809	0.68092105	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		48.958	47.913	2;3	0.00025677	40080	160511_QHF_FH_JSI10i_3	76.326	56.721			0.71588	0.80094	36.89	3	2	Median	NaN	NaN	NaN	0	0	Median	0.71951	0.83837	6.4594	2	1	Median	0.48745	0.44471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	218000000	126840000	91165000	0	0	0	126250000	67919000	58330000	91754000	58919000	32835000	0	0	0	28684	1432	27134	178099;178100;178101	240750;240751;240752	240752			3	
KYNPDSGLEVLAVQR	1	Unmodified	1687.8893	0.88933392	4748	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			57.159	55.618	3	4.7099E-08	46521	160511_QHF_FH_JSI10i_3	93.478	80.852			1.0496	1.2301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0496	1.2301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27986000	11735000	16251000	0	0	0	27986000	11735000	16251000	0	0	0	0	0	0	28685	4748	27135	178102;178103	240753;240754	240754			2	
KYNVEYQEYLQSK	2	Unmodified	1690.8203	0.82025131	4071	Q96FJ0	STAMBPL1	AMSH-like protease	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	47.272	47.151	3	0.040809	40354	160511_QHF_FH_JSI12i_3	28.351	17.246			1.0079	0.95664	7.9507	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9684	0.90434	NaN	1	0	Median	1.049	1.012	NaN	1	0	Median	82582000	37372000	45210000	0	0	0	0	0	0	38152000	17172000	20980000	44430000	20200000	24230000	28686	4071	27136	178104;178105	240755;240756	240756			0	
KYNWSAK	2	Unmodified	895.4552	0.45520186	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.321	13.339	3	0.017922	10487	160511_QHF_FH_JSI9i_3	41.652	8.1019			1.6846	1.3614	NaN	1	1	Median	1.6846	1.3614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91557000	33748000	57809000	91557000	33748000	57809000	0	0	0	0	0	0	0	0	0	28687	1967	27137	178106	240757	240757			1	
KYPDRVPVIVEK	2	Unmodified	1441.8293	0.82929985	649	O95166;Q9H0R8	GABARAP;GABARAPL1	Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		39.674	39.674	3;4	0.001309	33698	160511_QHF_FH_JSI10i_3	64.224	50.635			0.76718	0.71212	7.9847	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76718	0.71212	7.9847	2	2	Median	NaN	NaN	NaN	0	0	Median	231330000	119480000	111850000	0	0	0	0	0	0	231330000	119480000	111850000	0	0	0	28688	649	27138	178107;178108;178109;178110	240758;240759;240760;240761	240760			4	
KYPDYESK	2	Unmodified	1028.4815	0.48147619	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	12.529	12.174	2	0.0041421	9112	160511_QHF_FH_JSI12i_3	69.812	48.284			1.0244	0.9736	20.003	6	0	Median	1.007	0.8561	NaN	1	0	Median	0.80678	0.97272	NaN	1	0	Median	1.2093	1.1623	24.929	2	0	Median	0.95614	1.0109	26.6	2	0	Median	505000000	247140000	257860000	51964000	27312000	24652000	56018000	28287000	27731000	173590000	85219000	88372000	223430000	106320000	117110000	28689	5633	27139	178111;178112;178113;178114;178115;178116	240762;240763;240764;240765;240766;240767;240768	240767			7	
KYPDYYQQIK	2	Unmodified	1344.6714	0.67140222	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	34.9	34.772	2;3	0.0028579	29635	160511_QHF_FH_JSI12i_3	50.108	28.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28690	3318	27140	178117;178118	240769;240770	240770			2	
KYPEAAACYGR	1	Unmodified	1284.5921	0.59210605	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		19.71	19.125	3	0.00040894	15989	160511_QHF_FH_JSI11i_3	51.841	35.704			0.71845	0.71705	34.691	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83278	0.91639	NaN	1	1	Median	0.61982	0.56107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77118000	47583000	29536000	0	0	0	29675000	15534000	14141000	47443000	32049000	15394000	0	0	0	28691	5434	27141	178119;178120	240771;240772;240773;240774	240773			4	
KYPGVIYVPEPWAFYTLHVSSR	1	Unmodified	2608.3478	0.34783025	5077	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.541	81.823	4	0.00013607	46143	160513_QHF_FH_JSI10Kac_6	84.181	76.905			0.69821	0.80341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69821	0.80341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184380000	126850000	57527000	0	0	0	184380000	126850000	57527000	0	0	0	0	0	0	28692	5077	27142	178121	240775	240775			1	
KYPIDLAGLLQYVANQLK	2	Unmodified	2046.1514	0.15136227	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.488	91.382	3	3.4024E-08	54887	160513_QHF_FH_JSI10Kac_6	112.3	97.045			0.75702	0.80444	28.026	3	1	Median	0.70004	0.60311	NaN	1	0	Median	0.89711	1.0563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75702	0.80444	NaN	1	1	Median	393730000	218240000	175490000	108910000	66677000	42229000	245120000	126560000	118560000	0	0	0	39704000	25005000	14698000	28693	3675	27143	178122;178123;178124	240776;240777;240778;240779;240780	240779			5	
KYPNVFK	2	Unmodified	894.49634	0.49633839	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	2	1	2	26.716	25.869	2;3	0.018015	21581	160511_QHF_FH_JSI10i_3	35.88	24.659			0.86427	0.86493	41.304	8	4	Median	0.91616	0.73227	35.968	3	1	Plateau	0.81052	0.95005	2.0174	2	0	Median	0.39725	0.38346	NaN	1	1	Median	1.054	1.0644	40.612	2	2	Median	942100000	538210000	403890000	363420000	181110000	182310000	214680000	123670000	91010000	172320000	131600000	40720000	191670000	101830000	89847000	28694	389	27144	178125;178126;178127;178128;178129;178130;178131;178132	240781;240782;240783;240784;240785;240786;240787;240788;240789	240782			9	
KYPNVFKK	3	Unmodified	1022.5913	0.59130141	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	2	By MS/MS			By MS/MS	3	0			4							2			2	21.673	21.025	3	0.0047806	16633	160511_QHF_FH_JSI12i_3	62.546	40.46			0.73247	0.6731	27.312	2	2	Median	0.67218	0.55489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79817	0.81649	NaN	1	1	Median	180500000	106030000	74469000	69147000	42725000	26423000	0	0	0	0	0	0	111350000	63301000	48047000	28695	389	27145	178133;178134;178135;178136	240790;240791;240792;240793	240793			4	
KYPTLLEVLLNFLK	2	Unmodified	1690.0069	0.0069298639	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			101.71	94.26	3	9.9691E-05	56560	160513_QHF_FH_JSI10Kac_6	101.43	88.312			0.88143	0.88581	13.537	2	2	Median	1.1384	0.9748	NaN	1	1	Median	0.68249	0.80495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186270000	122440000	63832000	55584000	31276000	24308000	130680000	91160000	39524000	0	0	0	0	0	0	28696	1535	27146	178137;178138	240794;240795	240795			2	
KYPTVLFIYGGPQVQLVNNR	1	Unmodified	2305.2583	0.25828696	3161	Q6V1X1	DPP8	Dipeptidyl peptidase 8	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.396	77.782	3	1.233E-08	43215	160513_QHF_FH_JSI10Kac_6	103.1	88.175			0.68602	0.8011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68602	0.8011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80419000	42734000	37685000	0	0	0	80419000	42734000	37685000	0	0	0	0	0	0	28697	3161	27147	178139	240796	240796			1	
KYPYHLMLQK	2	Unmodified	1319.706	0.70601359	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		35.168	34.237	3;4	0.00035342	33832	160511_QHF_FH_JSI9i_3	64.654	58.36			0.82112	0.76715	129.32	5	3	Median	1.3333	1.0978	69.711	2	1	Median	0.67342	0.76715	NaN	1	1	Median	0.22536	0.21625	184.38	2	1	Median	NaN	NaN	NaN	0	0	Median	744890000	619920000	124970000	72720000	36170000	36550000	31917000	25790000	6127100	640250000	557960000	82289000	0	0	0	28698	3290	27148	178140;178141;178142;178143;178144	240797;240798;240799;240800;240801;240802	240801			6	
KYPYLWLCYNGEIYNHK	2	Unmodified	2260.0775	0.0775454	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			76.7	70.45	3	0.031259	38488	160513_QHF_FH_JSI10Kac_6	35.349	31.855			0.68918	0.7916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68918	0.7916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85098000	63351000	21747000	0	0	0	85098000	63351000	21747000	0	0	0	0	0	0	28699	900	27149	178145	240803	240803			0	
KYPYVEVNSILGIDSAYDR	1	Unmodified	2201.1004	0.10044891	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		85.761	85.761	3	1.6868E-05	76426	160511_QHF_FH_JSI11i_3	74.364	65.318			1.1165	1.0373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1165	1.0373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46772000	20476000	26295000	0	0	0	0	0	0	46772000	20476000	26295000	0	0	0	28700	5135	27150	178146	240804	240804			1	
KYPYWPHQPIENL	1	Unmodified	1683.8409	0.84092717	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			19							7	6	3	3	68.834	67.78	2;3	1.1772E-30	59008	160511_QHF_FH_JSI11i_3	189.57	184.88			1.0475	1.0142	11.342	16	5	Median	1.3009	1.0607	10.017	6	3	Median	0.88477	1.0276	14.393	5	1	Median	1.0498	1.0204	14.505	3	1	Median	0.93172	0.93629	2.1887	2	0	Median	3350200000	1678900000	1671300000	425140000	202150000	222990000	909010000	479460000	429560000	803040000	373350000	429690000	1213000000	623960000	589090000	28701	589	27151	178147;178148;178149;178150;178151;178152;178153;178154;178155;178156;178157;178158;178159;178160;178161;178162;178163;178164;178165	240805;240806;240807;240808;240809;240810;240811;240812;240813;240814;240815;240816;240817;240818;240819;240820;240821;240822;240823;240824;240825;240826;240827;240828;240829;240830;240831;240832;240833;240834;240835;240836;240837;240838;240839;240840;240841;240842;240843;240844;240845;240846;240847;240848	240809			44	
KYPYWPHQPIENL	1	Acetyl (K)	1725.8515	0.85149185	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.788	72.53	2	4.3797E-20	39498	160513_QHF_FH_JSI11Kac_6	160.67	135.29			0.87333	0.96462	12.991	4	0	Median	1.1811	1.0272	NaN	1	0	Median	0.85515	1.0047	NaN	1	0	Median	0.79734	0.7717	NaN	1	0	Median	0.8919	0.92617	NaN	1	0	Median	412810000	221300000	191510000	75773000	35550000	40223000	118730000	64404000	54328000	102250000	60371000	41878000	116060000	60971000	55085000	28702	589	27151	178166;178167;178168;178169	240849;240850;240851;240852;240853;240854;240855	240850	307		7	
KYQAIASNSK	2	Unmodified	1108.5877	0.58767259	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	8.1285	7.7477	2	2.0855E-09	5471	160511_QHF_FH_JSI9i_3	130.98	109.45			1.03	0.94808	23.746	3	0	Median	1.1892	0.94808	NaN	1	0	Median	1.03	1.1887	NaN	1	0	Median	0.79487	0.73944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	293410000	125290000	168120000	127930000	42911000	85019000	67242000	32307000	34935000	98238000	50066000	48171000	0	0	0	28703	533	27152	178170;178171;178172;178173	240856;240857;240858;240859;240860;240861;240862	240860			7	
KYQEEVPVYVPK	2	Unmodified	1477.7817	0.78168095	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	45.504	44.936	2;3	0.012453	38329	160511_QHF_FH_JSI12i_3	36	19.907			1.0907	1.0721	20.494	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2344	1.5275	NaN	1	0	Median	1.0907	1.07	NaN	1	0	Median	1.0643	1.0721	NaN	1	0	Median	172570000	82170000	90403000	0	0	0	47780000	23884000	23896000	41618000	20927000	20690000	83176000	37359000	45816000	28704	316	27153	178174;178175;178176;178177	240863;240864;240865	240864			2	
KYQEQLVQEQELAK	2	Unmodified	1732.8996	0.89956426	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.249	37.086	3	0.001576	31470	160511_QHF_FH_JSI12i_3	60.657	42.519			0.31637	0.31987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31637	0.31987	NaN	1	1	Median	84977000	64728000	20249000	0	0	0	0	0	0	0	0	0	84977000	64728000	20249000	28705	1542	27154	178178	240866	240866			1	
KYQIFIPMVNK	2	Unmodified	1379.7635	0.76352847	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	70.093	69.682	3	0.00095461	60227	160511_QHF_FH_JSI12i_3	64.82	59.1			0.91213	0.93457	19.221	5	5	Median	NaN	NaN	NaN	0	0	Median	0.74778	0.84907	NaN	1	1	Median	1.1905	1.0985	20.762	2	2	Median	0.82235	0.8422	14.718	2	2	Median	258490000	131720000	126780000	0	0	0	38957000	22477000	16480000	93424000	44116000	49308000	126110000	65123000	60990000	28706	1535	27155	178179;178180;178181;178182;178183	240867;240868;240869;240870;240871	240870			5	
KYQIFSGTSK	2	Unmodified	1157.6081	0.60807369	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			27.951	26.603	2;3	9.1982E-05	21535	160511_QHF_FH_JSI9i_3	85.355	73.118			0.89572	1.4497	38.418	3	1	Plateau	1.3219	1.084	54.033	2	1	Median	0.88363	1.0112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182970000	68168000	114800000	133850000	51292000	82560000	49115000	16876000	32239000	0	0	0	0	0	0	28707	2383	27156	178184;178185;178186	240872;240873;240874;240875	240873			4	
KYQIFSGTSK	2	Acetyl (K)	1199.6186	0.61863837	2383	Q13287	NMI	N-myc-interactor	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.021	42.296	2	0.033428	22946	160513_QHF_FH_JSI11Kac_6	62.303	30.368			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28708	2383	27156	178187	240876	240876			1	
KYQLAVTK	2	Unmodified	949.55967	0.55966693	3631	Q8NDV3	SMC1B	Structural maintenance of chromosomes protein 1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	20.317	19.719	2;3	0.0017642	16510	160511_QHF_FH_JSI11i_3	60.019	0			1.158	1.0826	14.256	8	0	Median	1.3317	1.0826	1.0395	2	0	Median	1.0013	1.1625	19.658	2	0	Median	1.2065	1.1527	4.8432	2	0	Median	0.85731	0.88059	2.1764	2	0	Median	1964200000	993600000	970580000	523510000	252700000	270810000	299610000	163210000	136400000	436500000	216680000	219820000	704570000	361010000	343560000	28709	3631	27157	178188;178189;178190;178191;178192;178193;178194;178195	240877;240878;240879;240880;240881;240882;240883;240884;240885;240886;240887;240888	240878			12	
KYSEFLPSMQSAQGLITQVDK	2	Unmodified	2369.1937	0.19369737	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		82.8	82.235	3;4	1.5049E-18	78370	160511_QHF_FH_JSI11i_3	144.92	122.01			1.4489	1.4494	65.121	4	3	Median	0.95754	0.80189	NaN	1	1	Median	2.1925	2.5517	NaN	1	1	Median	1.5523	1.4494	77.594	2	1	Median	NaN	NaN	NaN	0	0	Median	168020000	68971000	99054000	15789000	6330900	9458000	33066000	12578000	20489000	119170000	50062000	69107000	0	0	0	28710	316	27158	178196;178197;178198;178199	240889;240890;240891;240892	240890			4	
KYSEIEEFYQK	2	Unmodified	1462.698	0.6980109	2863	Q53T59	HS1BP3	HCLS1-binding protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	45.409	45.168	2	0.00013596	38616	160511_QHF_FH_JSI12i_3	95.573	61.707			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28711	2863	27159	178200;178201	240893;240894	240894			2	
KYSFMAVIHFAGLK	2	Unmodified	1610.8643	0.86430515	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			80.978	75.382	3	0.02822	41452	160513_QHF_FH_JSI10Kac_6	35.891	24.099			0.49392	0.57485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49392	0.57485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106980000	74740000	32238000	0	0	0	106980000	74740000	32238000	0	0	0	0	0	0	28712	2533	27160	178202	240895	240895			1	
KYSLPSK	2	Unmodified	821.4647	0.46470391	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By matching	3	0			4							1	1	1	1	16.775	16.24	3	0.026836	13123	160511_QHF_FH_JSI9i_3	29.149	12.185			1.1481	1.0057	13.675	4	0	Median	1.1437	0.92814	NaN	1	0	Median	0.79937	0.93315	NaN	1	0	Median	1.1525	1.0838	NaN	1	0	Median	1.2453	1.2356	NaN	1	0	Median	261270000	117020000	144250000	78192000	40546000	37646000	63282000	32521000	30761000	43211000	14166000	29045000	76582000	29783000	46799000	28713	5330	27161	178203;178204;178205;178206	240896	240896			1	
KYSQFINFPIYVWSSK	2	Unmodified	2006.0302	0.030184502	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	4	3	3	3	92.371	86.818	2;3	1.1139E-28	81637	160511_QHF_FH_JSI9i_3	157.75	135.88			0.82832	0.94059	35.89	12	1	Plateau	1.2051	1.0855	29.301	3	0	Plateau	0.81334	0.88575	21.49	3	0	Plateau	0.97522	0.93423	9.7053	3	0	Plateau	0.97362	0.99866	68.695	3	1	Plateau	21975000000	11324000000	10651000000	4032200000	1954800000	2077400000	9132600000	4991600000	4141000000	3908900000	1902000000	2006900000	4901500000	2475400000	2426100000	28714	1057	27162	178207;178208;178209;178210;178211;178212;178213;178214;178215;178216;178217;178218;178219	240897;240898;240899;240900;240901;240902;240903;240904;240905;240906;240907;240908;240909;240910;240911;240912;240913;240914;240915;240916;240917;240918	240907			22	
KYSQFINFPIYVWSSK	2	Acetyl (K)	2048.0407	0.040749188	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		95.382	85.99	2	5.4407E-43	48685	160513_QHF_FH_JSI11Kac_6	232.37	176.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33705000	33705000	0	0	0	0	0	0	0	33705000	33705000	0	0	0	0	28715	1057	27162	178220	240919	240919	891		1	
KYSSLNLFDTYK	2	Unmodified	1477.7453	0.74529545	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	60.191	59.923	3	0.011792	51653	160511_QHF_FH_JSI12i_3	26.232	21.588			0.65934	0.65715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65934	0.65715	NaN	1	0	Median	53790000	32331000	21459000	0	0	0	0	0	0	0	0	0	53790000	32331000	21459000	28716	1628	27163	178221	240920	240920			1	
KYSSVSEPAK	2	Unmodified	1094.5608	0.56078914	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	1	2	2	9.0386	8.9381	2;3	0.00099276	6651	160511_QHF_FH_JSI11i_3	65.278	33.06			1.0246	1.0527	11.569	4	2	Median	NaN	NaN	NaN	0	0	Median	0.84735	1.0541	NaN	1	0	Median	1.1586	1.0742	19.934	2	2	Median	1.0453	1.0514	NaN	1	0	Median	604500000	311510000	292980000	0	0	0	29896000	17152000	12745000	378980000	176510000	202470000	195620000	117850000	77772000	28717	5495	27164	178222;178223;178224;178225;178226;178227	240921;240922;240923;240924;240925;240926	240922			6	
KYSSVSEPAK	2	Acetyl (K)	1136.5714	0.57135383	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		23.787	16.274	2	0.01785	10372	160513_QHF_FH_JSI11Kac_3	76.228	49.844			0.63076	0.67766	71.584	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95891	1.1242	NaN	1	0	Median	0.4149	0.40849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12298000	8080300	4217500	0	0	0	4324600	2430400	1894100	7973200	5649900	2323400	0	0	0	28718	5495	27164	178228;178229	240927	240927	3457		1	
KYSWDVK	2	Unmodified	924.47052	0.47051757	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	25.038	25.012	3	0.059165	20849	160511_QHF_FH_JSI12i_3	22.492	5.7156			0.8028	0.79839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8028	0.79839	NaN	1	1	Median	154890000	82804000	72089000	0	0	0	0	0	0	0	0	0	154890000	82804000	72089000	28719	2274	27165	178230	240928	240928			1	
KYTEITATYFQGVR	1	Unmodified	1675.857	0.85697116	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	1	3	1		59.824	55.298	3	5.3269E-05	45357	160511_QHF_FH_JSI9i_3	88.075	78.287			0.98003	1.0915	19.902	5	2	Median	0.98003	0.79866	NaN	1	0	Median	0.91619	1.0915	7.8124	3	2	Median	1.4447	1.3696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231890000	118870000	113020000	66236000	32364000	33872000	148010000	79124000	68888000	17641000	7380700	10260000	0	0	0	28720	1435	27166	178231;178232;178233;178234;178235	240929;240930;240931;240932;240933;240934	240933			6	
KYTELPHGAISEDQAVGPADIPCDSTGQTST	1	Unmodified	3244.483	0.48301569	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	1			By MS/MS		3	0			3									3		61.498	61.498	3	5.6294E-09	54717	160511_QHF_FH_JSI11i_3	61.112	55.737			0.78571	0.745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78571	0.745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25869000	16616000	9252100	0	0	0	0	0	0	25869000	16616000	9252100	0	0	0	28721	4760	27167	178236;178237;178238	240935;240936;240937;240938	240938			4	
KYTLENK	2	Unmodified	894.48108	0.48108226	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	9.682	9.7308	2	0.013265	7016	160511_QHF_FH_JSI12i_3	68.422	21.355			1.4495	1.4338	40.392	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0094	1.9078	NaN	1	0	Median	1.0457	1.0776	NaN	1	0	Median	193240000	89315000	103930000	0	0	0	0	0	0	80345000	23543000	56802000	112900000	65772000	47126000	28722	3506	27168	178239;178240	240939	240939			1	
KYTLFSASSEGQNHSR	1	Acetyl (K)	1852.8704	0.8703894	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		49.99	40.278	3	0.00077767	21875	160513_QHF_FH_JSI11Kac_6	74.147	67.984			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3872700	3872700	0	0	0	0	0	0	0	3872700	3872700	0	0	0	0	28723	3736	27169	178241	240940	240940	2924		1	
KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	2	Unmodified	3225.6479	0.64789617	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	1	2	2							1	2	1	1	93.665	93.535	3	3.0154E-32	81258	160511_QHF_FH_JSI12i_3	133.28	131.08			1.6673	1.4466	72.995	3	1	Median	1.6673	1.4466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63846	0.60276	NaN	1	0	Median	2.5067	2.5683	NaN	1	0	Median	111740000	48726000	63017000	12133000	3183300	8949300	17397000	17397000	0	22462000	12212000	10250000	59752000	15934000	43818000	28724	814	27170	178242;178243;178244;178245;178246	240941;240942;240943;240944;240945;240946;240947;240948;240949;240950;240951;240952;240953;240954	240952			14	
KYTQAGNK	2	Unmodified	908.47158	0.4715802	4230	Q96RY7	IFT140	Intraflagellar transport protein 140 homolog	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	8.5776	7.9533	2	0.043843	5718	160511_QHF_FH_JSI12i_2	38.792	9.3186			0.9993	1.1505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9993	1.1505	NaN	1	0	Median	54455000	29631000	24824000	0	0	0	0	0	0	0	0	0	54455000	29631000	24824000	28725	4230	27171	178247	240955	240955			1	
KYTQFNPK	2	Unmodified	1024.5342	0.53418046	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	14.111	13.599	2;3	0.001555	10788	160511_QHF_FH_JSI9i_3	55.37	50.674			1.2328	1.2082	110.74	7	0	Median	1.0576	0.8691	5.3406	2	0	Median	1.2452	1.4422	2.0349	2	0	Median	0.30288	0.28527	204.14	2	0	Median	1.4411	1.4512	NaN	1	0	Median	634470000	319520000	314950000	225290000	103890000	121400000	129150000	63613000	65532000	185140000	106980000	78162000	94888000	45030000	49858000	28726	5485	27172	178248;178249;178250;178251;178252;178253;178254	240956;240957;240958;240959;240960;240961;240962;240963	240961			8	
KYTQFNPK	2	Acetyl (K)	1066.5447	0.54474515	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		35.756	26.396	2	0.0017228	16288	160513_QHF_FH_JSI11Kac_4	92.439	92.439			1.3763	1.3432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3763	1.3432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9535700	3882800	5652800	0	0	0	0	0	0	9535700	3882800	5652800	0	0	0	28727	5485	27172	178255	240964	240964	3447		1	
KYVHADAPTNK	2	Acetyl (K)	1284.6463	0.64625011	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		23.147	13.733	3	0.0033882	9516	160513_QHF_FH_JSI11Kac_5	60.628	37.711			7.7491	8.2124	1.0884	2	2	Median	NaN	NaN	NaN	0	0	Median	7.3054	8.2759	NaN	1	1	Median	8.2197	8.1495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7501200	727810	6773400	0	0	0	3543000	97049	3446000	3958200	630770	3327400	0	0	0	28728	3907	27173	178256;178257;178258	240965;240966;240967	240966	2996		3	
KYVISDEEEEDDD	1	Unmodified	1584.6315	0.63150706	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	30.866	30.415	2	0.00063796	27175	160511_QHF_FH_JSI11i_1	70.977	64.737			0.69019	0.73093	26.887	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5428	0.60438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87759	0.88398	NaN	1	1	Median	36361000	26450000	9911200	0	0	0	18792000	14697000	4095800	0	0	0	17569000	11754000	5815400	28729	3778	27174	178259;178260;178261;178262;178263	240968;240969;240970;240971;240972	240968			5	
KYVISDEEEEDDD	1	Acetyl (K)	1626.6421	0.64207175	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	1	0	0	1			By MS/MS		11	0				1								1		52.6	43.221	2	0.022731	17311	160513_QHF_FH_JSI11Kac_1	60.434	60.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1188300	1188300	0	0	0	0	0	0	0	1188300	1188300	0	0	0	0	28730	3778	27174	178264	240973	240973	2934		1	
KYVIVSSK	2	Unmodified	922.54877	0.54876789	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	3	0			3							1		1	1	16.984	16.614	2	0.031578	13444	160511_QHF_FH_JSI9i_3	41.448	41.448			1.1456	1.1698	6.5872	3	0	Plateau	1.4571	1.1838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1456	1.0487	NaN	1	0	Median	1.0459	1.0655	NaN	1	0	Median	199110000	89333000	109780000	86767000	33120000	53646000	0	0	0	48902000	24938000	23963000	63445000	31275000	32170000	28731	475	27175	178265;178266;178267	240974	240974			1	
KYVIYIER	1	Unmodified	1082.6124	0.61243078	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.28		1	7					4	8	7	6	4	3	45.502	39.557	2;3	0.0002825	21177	160513_QHF_FH_JSI9Kac_6	89.698	82.318			0.96809	0.93006	16.218	19	1	Median	1.0486	0.86843	12.988	6	1	Median	0.89064	1.033	26.137	6	0	Median	1.0435	1.0077	9.3578	4	0	Linear	0.86294	0.91532	2.3444	3	0	Median	7584200000	3834400000	3749900000	2092400000	942570000	1149800000	3478100000	1846000000	1632200000	1396000000	713970000	682020000	617700000	331850000	285850000	28732	1949;5450	27176	178268;178269;178270;178271;178272;178273;178274;178275;178276;178277;178278;178279;178280;178281;178282;178283;178284;178285;178286;178287	240975;240976;240977;240978;240979;240980;240981;240982;240983;240984;240985;240986;240987;240988;240989;240990;240991;240992;240993;240994;240995;240996;240997;240998;240999;241000;241001;241002;241003;241004;241005;241006;241007;241008;241009;241010;241011;241012;241013	241001			38	
KYVIYIER	1	Acetyl (K)	1124.623	0.62299547	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.722							2	5	5	3	3	3	3	66.483	56.405	2	0.0014136	28384	160513_QHF_FH_JSI10Kac_5	120.15	89.518			0.8934	0.92907	31.809	12	0	Median	1.0694	0.89985	38.27	3	0	Median	0.74776	0.92879	10.074	3	0	Plateau	0.74093	0.70603	25.061	3	0	Plateau	0.89352	0.95924	43.451	3	0	Plateau	1034700000	537420000	497320000	263800000	115310000	148500000	223440000	127700000	95737000	292970000	161490000	131480000	254530000	132930000	121600000	28733	1949;5450	27176	178288;178289;178290;178291;178292;178293;178294;178295;178296;178297;178298;178299	241014;241015;241016;241017;241018;241019;241020;241021	241019	1960		8	
KYVQFHESK	2	Acetyl (K)	1206.6033	0.60332266	5421	Q9UM82	SPATA2	Spermatogenesis-associated protein 2	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	32.327	23.467	3	0.012148	12582	160513_QHF_FH_JSI12Kac_6	49.35	39.663			0.32603	0.3656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32603	0.3656	NaN	1	1	Median	2990000	2186000	804070	0	0	0	0	0	0	0	0	0	2990000	2186000	804070	28734	5421	27177	178300	241022	241022	3405		1	
KYVSQYYPK	2	Acetyl (K)	1216.6128	0.61282471	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.281	37.767	2	0.015876	22270	160513_QHF_FH_JSI11Kac_4	69.954	19.075			0.5844	0.57012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5844	0.57012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5634800	3599100	2035700	0	0	0	0	0	0	5634800	3599100	2035700	0	0	0	28735	2927	27178	178301	241023	241023	2719		1	
KYVVGLIIK	2	Unmodified	1031.6743	0.67430276	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			11						11	5	8	5	4	60.608	55.049	2;3	0.00017918	30124	160513_QHF_FH_JSI10Kac_6	73.233	58.082			0.74766	0.78652	19.227	9	9	Median	0.75621	0.63221	4.7804	2	2	Median	0.63867	0.7493	11.363	4	4	Median	1.1219	1.0584	NaN	1	1	Median	0.88941	0.92415	4.9141	2	2	Median	955110000	498890000	456220000	139640000	70269000	69373000	446370000	246550000	199820000	158510000	77717000	80788000	210590000	104360000	106230000	28736	231	27179	178302;178303;178304;178305;178306;178307;178308;178309;178310;178311;178312;178313;178314;178315;178316;178317;178318;178319;178320;178321;178322;178323	241024;241025;241026;241027;241028;241029;241030;241031;241032;241033;241034;241035;241036;241037;241038;241039;241040;241041;241042;241043;241044;241045	241045			22	
KYYFNNPEDGFFK	2	Unmodified	1667.762	0.76200815	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	64.615	64.47	3	0.0035468	55671	160511_QHF_FH_JSI12i_3	51.211	39.941			1.4904	1.3864	17.766	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6974	1.572	NaN	1	0	Median	1.3087	1.2227	NaN	1	1	Median	104320000	48940000	55378000	0	0	0	0	0	0	72725000	32291000	40434000	31593000	16650000	14944000	28737	5179	27180	178324;178325	241046;241047	241047			1	
KYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVK	3	Unmodified	4032.0507	0.050711337	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			100.08	99.911	4	0.0057342	82557	160511_QHF_FH_JSI10i_3	32.117	27.673			1.4091	1.6064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4091	1.6064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13937000	10179000	3758700	0	0	0	13937000	10179000	3758700	0	0	0	0	0	0	28738	2609	27181	178326	241048	241048			1	
LAAAEGLEPK	1	Unmodified	997.54441	0.5444108	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	33.061	32.328	2	8.9844E-11	28771	160511_QHF_FH_JSI10i_1	141.48	89.626			1.2575	1.3653	43.812	6	2	Median	2.0436	1.7308	81.405	2	1	Median	1.2575	1.5017	1.9113	2	1	Median	1.2719	1.2583	NaN	1	0	Median	0.84611	0.90996	NaN	1	0	Median	1858200000	816690000	1041500000	503660000	201910000	301750000	541370000	227460000	313900000	429150000	167840000	261310000	383990000	219470000	164520000	28739	1516	27182	178327;178328;178329;178330;178331;178332	241049;241050;241051;241052;241053;241054;241055;241056;241057;241058	241053			10	
LAAAFAVSR	0	Unmodified	904.51305	0.51305109	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.5			2					2	4	2	3	2	1	47.18	39.745	2	0.00086907	21634	160513_QHF_FH_JSI11Kac_6	89.296	51.162			0.91627	1.0485	16.243	8	0	Median	1.2985	1.1056	8.3033	2	0	Median	0.90139	1.0545	11.336	3	0	Median	1.0799	1.0187	33.212	2	0	Median	0.79731	0.8612	NaN	1	0	Median	791530000	408210000	383320000	60370000	26258000	34112000	428810000	240290000	188520000	278400000	128050000	150350000	23952000	13620000	10332000	28740	1848	27183	178333;178334;178335;178336;178337;178338;178339;178340	241059;241060;241061;241062;241063;241064;241065;241066;241067;241068;241069;241070	241065			12	
LAAAILGGVDQIHIK	1	Unmodified	1517.893	0.89296274	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	76.448	75.958	2;3	5.277E-07	65847	160511_QHF_FH_JSI12i_3	128.31	121.63			1.2881	1.2763	31.444	7	2	Median	1.1938	1.0279	NaN	1	0	Median	0.67655	0.82259	NaN	1	0	Median	1.5452	1.515	24.252	2	1	Median	1.2881	1.284	36.023	3	1	Median	319290000	143650000	175640000	19886000	12326000	7560000	36525000	25515000	11011000	114680000	43091000	71588000	148200000	62716000	85480000	28741	1203	27184	178341;178342;178343;178344;178345;178346;178347;178348	241071;241072;241073;241074;241075;241076;241077	241076			5	
LAAAILGGVDQIHIKPGAK	2	Unmodified	1871.0993	0.09926712	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	67.444	67.296	3	5.2212E-24	58186	160511_QHF_FH_JSI12i_3	136.34	112.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28742	1203	27185	178349;178350	241078;241079	241079			2	
LAAAISEVVSQTPASTTQAGAPPR	0	Unmodified	2322.2179	0.21793829	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	3	3	2							1	2	1	4	67.592	66.926	3	7.3889E-13	60534	160511_QHF_FH_JSI10i_1	101.53	91.744			0.81066	0.92881	57.567	7	3	Plateau	1.2633	1.0753	NaN	1	1	Median	0.80542	0.95898	14.74	2	0	Median	0.77582	0.75354	NaN	1	0	Median	0.85811	0.92759	77.315	3	2	Plateau	349780000	140050000	209720000	41034000	11693000	29341000	127740000	54128000	73610000	75147000	41888000	33259000	105860000	32343000	73513000	28743	1181	27186	178351;178352;178353;178354;178355;178356;178357;178358	241080;241081;241082;241083;241084;241085;241086;241087	241083			7	
LAAAISEVVSQTPASTTQAGAPPRDTSQSDK	1	Unmodified	3083.5371	0.53710017	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.832	7	5	5							2	8	4	3	60.857	60.139	3;4	5.0394E-32	54315	160511_QHF_FH_JSI10i_1	133.62	109.34			1.0657	1.0205	40.969	15	6	Median	1.2807	1.0849	8.6529	2	0	Median	0.8338	1.0031	55.757	7	4	Median	1.0131	0.96402	4.8112	3	0	Plateau	0.94632	0.98831	37.772	3	2	Median	947760000	498580000	449170000	139580000	66504000	73074000	380530000	212280000	168260000	295810000	156850000	138960000	131840000	62950000	68888000	28744	1181	27187	178359;178360;178361;178362;178363;178364;178365;178366;178367;178368;178369;178370;178371;178372;178373;178374;178375	241088;241089;241090;241091;241092;241093;241094;241095;241096;241097;241098;241099;241100;241101;241102;241103;241104;241105;241106;241107;241108;241109;241110;241111;241112;241113	241102			26	
LAAAVFSLAIK	1	Unmodified	1102.675	0.67503104	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	84.184	83.533	2	5.6928E-07	69963	160511_QHF_FH_JSI10i_3	113.71	97.167			1.0975	1.1018	23.83	5	1	Median	1.069	0.87231	NaN	1	0	Median	0.88701	1.0157	NaN	1	0	Median	1.4737	1.412	22.242	2	1	Median	1.0975	1.1018	NaN	1	0	Median	332010000	140000000	192010000	56108000	24182000	31927000	46628000	24571000	22058000	67589000	28319000	39271000	161680000	62925000	98759000	28745	3605	27188	178376;178377;178378;178379;178380	241114;241115;241116;241117;241118;241119;241120;241121;241122;241123	241117			10	
LAADAGTFLSR	0	Unmodified	1120.5877	0.58767259	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	52.263	52.146	2	0.0075649	44673	160511_QHF_FH_JSI12i_3	50.805	37.226			1.6206	1.593	10.686	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7899	1.7181	NaN	1	0	Median	1.4673	1.4771	NaN	1	0	Median	106480000	49064000	57415000	0	0	0	0	0	0	54560000	22522000	32038000	51919000	26542000	25377000	28746	5559	27189	178381;178382	241124;241125	241124			2	
LAADDFR	0	Unmodified	806.39227	0.39226725	842;65;56;77;69	P05783;CON__Q92764;CON__Q14525;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__Q14532;CON__A2AB72;CON__Q148H6;CON__O76013;CON__REFSEQ:XP_986630;Q14525;Q15323;Q14532;O76013;Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__A2A4G1;CON__P08730-1;P13646;CON__Q3ZAW8;CON__Q9Z2K1;CON__ENSEMBL:ENSP00000377550;P13645;CON__P13645;CON__P02535-1;CON__Q2M2I5;Q2M2I5;CON__Q497I4;Q92764	KRT18;KRT33B;KRT31;KRT32;KRT36;KRT17;KRT14;KRT15;KRT13;KRT10;KRT24;KRT35	Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha6;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.06	4	4	4			2	2	4		4	4	6	6	31.542	27.358	2	3.3639E-05	16655	160513_QHF_FH_JSI11Kac_4	128.48	83.511		+	0.99461	0.98572	21.127	20	0	Median	1.1582	0.98077	16.53	4	0	Median	0.77068	0.90456	19.522	4	0	Median	0.97534	0.94157	22.651	6	0	Median	0.97407	1.0518	27.473	6	0	Median	15960000000	7642800000	8316900000	3923600000	1708500000	2215000000	4169600000	2027500000	2142200000	4181300000	1940900000	2240400000	3685200000	1965900000	1719300000	28747	842;65;56;69;77	27190	178383;178384;178385;178386;178387;178388;178389;178390;178391;178392;178393;178394;178395;178396;178397;178398;178399;178400;178401;178402	241126;241127;241128;241129;241130;241131;241132;241133;241134;241135;241136;241137;241138;241139;241140;241141;241142;241143;241144;241145;241146;241147;241148;241149;241150;241151;241152;241153;241154;241155;241156	241141			31	
LAADDFRVK	1	Unmodified	1033.5556	0.55564418	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1				By MS/MS	2	0		1											1	37.902	36.55	3	0.059858	31110	160511_QHF_FH_JSI12i_2	28.797	19.934			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13027000	13027000	0	0	0	0	0	0	0	0	0	0	13027000	13027000	0	28748	842	27191	178403	241157	241157			1	
LAADFAQMELAVGPFCRR	0	Unmodified	2051.0081	0.0080856259	5455	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			85.245	84.633	3	0.056543	75265	160511_QHF_FH_JSI10i_2	23.1	17.77			0.85764	1.0582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85764	1.0582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100530000	58886000	41643000	0	0	0	100530000	58886000	41643000	0	0	0	0	0	0	28749	5455	27192	178404	241158	241158			1	
LAADGTVMNTFAHK	1	Unmodified	1474.7238	0.7238485	5263	Q9UBY9	HSPB7	Heat shock protein beta-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	49.866	49.709	2;3	5.3508E-07	43918	160511_QHF_FH_JSI11i_3	96.756	91.579			1.1197	1.089	14.21	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0182	0.96946	NaN	1	0	Median	1.0711	1.0754	18.226	2	0	Median	441700000	208870000	232840000	0	0	0	0	0	0	188490000	91055000	97439000	253210000	117810000	135400000	28750	5263	27193	178405;178406;178407	241159;241160;241161;241162;241163	241159			5	
LAADPSVVNLGQGFPDISPPTYVK	1	Unmodified	2484.29	0.2900406	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	100.96	100.81	3	3.3938E-13	91403	160511_QHF_FH_JSI12i_1	107.9	100.28			1.0294	1.0552	9.798	3	0	Plateau	1.0676	0.88599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0516	1.044	NaN	1	0	Median	1.0076	1.0552	NaN	1	0	Median	270220000	136660000	133560000	57613000	35408000	22206000	0	0	0	102860000	43582000	59277000	109740000	57667000	52078000	28751	3176	27194	178408;178409;178410	241164;241165;241166;241167;241168	241166			5	
LAADVGK	1	Unmodified	672.38064	0.38063993	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	5.95	3	3				3	2			2	3	2	4	15.69	11.806	2	0.010057	7578	160513_QHF_FH_JSI12Kac_3	83.614	49.876			0.89855	0.99645	16.589	11	1	Median	1.057	0.9191	27.962	2	0	Median	0.89747	1.0902	16.925	3	0	Median	1.0927	1.0808	12.543	2	0	Median	0.9249	0.98864	16.934	4	1	Median	25890000000	11822000000	14068000000	6785100000	2644500000	4140600000	949040000	493120000	455920000	9128200000	4349500000	4778600000	9027400000	4334500000	4692900000	28752	1014;826;1013	27195	178411;178412;178413;178414;178415;178416;178417;178418;178419;178420;178421	241169;241170;241171;241172;241173;241174;241175;241176;241177;241178;241179;241180;241181	241179			13	
LAADVGKAGAER	1	Unmodified	1156.62	0.62003536	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		15.15	14.926	2;3	0.013386	12166	160511_QHF_FH_JSI11i_3	71.349	40.275			0.41472	0.38941	104.49	3	0	Median	NaN	NaN	NaN	0	0	Median	0.15739	0.19025	NaN	1	0	Median	0.81323	0.76176	94.894	2	0	Median	NaN	NaN	NaN	0	0	Median	116720000	82882000	33840000	0	0	0	26654000	23603000	3051800	90067000	59279000	30788000	0	0	0	28753	826	27196	178422;178423;178424	241182;241183;241184	241182			3	
LAADVGKAGAER	1	Acetyl (K)	1198.6306	0.63060004	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		36.983	27.535	2	0.0031857	16898	160513_QHF_FH_JSI11Kac_4	73.781	44.984			0.033035	0.032388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.033035	0.032388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4602400	4473100	129310	0	0	0	0	0	0	4602400	4473100	129310	0	0	0	28754	826	27196	178425	241185	241185	476		1	
LAADVGKSGTER	1	Acetyl (K)	1244.6361	0.63607935	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.72	23.535	2	0.0024137	14810	160513_QHF_FH_JSI11Kac_4	74.162	54.891			0.60518	0.59312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60518	0.59312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7665500	4424100	3241400	0	0	0	0	0	0	7665500	4424100	3241400	0	0	0	28755	1014	27197	178426	241186	241186	815		1	
LAAEATEWQR	0	Unmodified	1173.5778	0.57783619	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		34.784	33.981	2	0.0012858	29034	160511_QHF_FH_JSI11i_2	77.732	63.962			1.077	0.82555	25.378	3	3	Plateau	1.3884	1.1764	NaN	1	1	Median	1.077	1.3164	NaN	1	1	Median	0.76942	0.81064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93442000	43881000	49561000	26840000	9996100	16843000	27235000	12643000	14592000	39368000	21241000	18126000	0	0	0	28756	4242	27198	178427;178428;178429	241187;241188;241189	241188			3	
LAAEQFKK	2	Unmodified	933.52837	0.5283668	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	17.425	17.092	3	0.004064	13619	160511_QHF_FH_JSI12i_3	57.59	30.336			0.60295	0.70419	60.889	3	3	Median	NaN	NaN	NaN	0	0	Median	0.60295	0.70419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91228	0.92853	83.097	2	2	Median	348690000	187390000	161300000	0	0	0	14886000	7773500	7112100	0	0	0	333810000	179620000	154190000	28757	384	27199	178430;178431;178432	241190;241191;241192	241191			3	
LAAFADALEFADEEK	1	Unmodified	1638.7777	0.77771779	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	92.371	91.72	2;3	8.6265E-17	80626	160511_QHF_FH_JSI11i_2	125.28	100.49			1.1651	1.2961	10.965	3	2	Median	1.626	1.4257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1311	1.2185	8.7245	2	1	Median	44929000	19751000	25179000	17722000	5840600	11882000	0	0	0	0	0	0	27207000	13910000	13297000	28758	2930	27200	178433;178434;178435;178436;178437;178438	241193;241194;241195;241196;241197;241198;241199;241200	241198			8	
LAAFGQLHK	1	Unmodified	983.55525	0.55525025	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.75		3	9						4	4	3	5	4	36.808	33.829	2;3	4.7907E-12	27690	160511_QHF_FH_JSI9i_3	141.39	108.55			1.1157	1.0957	28.473	15	2	Median	1.1917	0.94124	8.4017	4	0	Median	1.0525	1.2157	8.4028	3	0	Plateau	0.7945	0.77408	41.508	5	2	Median	1.4298	1.4446	10.459	3	0	Plateau	10972000000	5047100000	5925300000	2454800000	1000900000	1453900000	1984900000	892920000	1092000000	2604700000	1169100000	1435600000	3927900000	1984100000	1943800000	28759	2325	27201	178439;178440;178441;178442;178443;178444;178445;178446;178447;178448;178449;178450;178451;178452;178453;178454	241201;241202;241203;241204;241205;241206;241207;241208;241209;241210;241211;241212;241213;241214;241215;241216;241217;241218;241219;241220;241221;241222;241223;241224;241225;241226;241227;241228;241229;241230;241231;241232;241233;241234;241235;241236;241237;241238;241239	241222			39	
LAAFWLMK	1	Unmodified	978.53609	0.53609472	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	86.212	81.946	2	0.00028736	76926	160511_QHF_FH_JSI11i_3	113.25	92.97			1.009	1.0127	5.6487	7	0	Median	1.3113	1.0939	4.9462	2	0	Median	0.89019	1.0127	NaN	1	0	Median	1.0695	1.0287	7.859	2	0	Median	0.96032	0.99298	2.0222	2	0	Median	2095200000	994540000	1100700000	551520000	229310000	322210000	147710000	74630000	73085000	806950000	424510000	382440000	589020000	266090000	322930000	28760	4024	27202	178455;178456;178457;178458;178459;178460;178461	241240;241241;241242;241243;241244;241245;241246;241247;241248;241249;241250;241251;241252;241253;241254;241255	241240			16	
LAAFWLMK	1	Oxidation (M)	994.53101	0.53100934	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			74.259	72.819	2	0.010791	61059	160511_QHF_FH_JSI10i_3	60.358	42.51			0.80577	0.94285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80577	0.94285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27350000	15226000	12124000	0	0	0	27350000	15226000	12124000	0	0	0	0	0	0	28761	4024	27202	178462	241256	241256		2375	1	
LAAFYGV	0	Unmodified	739.39048	0.39047634	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	0		By MS/MS	By matching	By MS/MS	14	0							3				1	1	1	76.847	66.225	1	0.013195	35171	160513_QHF_FH_JSI10Kac_4	69.641	69.641			0.95328	0.95298	19.019	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.66852	0.79135	NaN	1	0	Median	0.97704	0.95298	NaN	1	0	Median	0.60573	0.65148	NaN	1	0	Median	17857000	10012000	7845400	0	0	0	5015400	2898900	2116400	9586300	5021300	4565000	3255400	2091400	1164000	28762	3914;205	27203	178463;178464;178465	241257;241258	241257			2	
LAAGPTFQHFLK	1	Unmodified	1328.7241	0.7241065	4251	Q96SZ6	CDK5RAP1	CDK5 regulatory subunit-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	60.457	59.63	3	9.2337E-06	51182	160511_QHF_FH_JSI12i_3	93.623	85.519			0.96619	0.962	2.6327	4	0	Median	1.2511	1.0058	NaN	1	0	Median	0.83091	0.97051	NaN	1	0	Median	1.0145	0.95357	NaN	1	0	Median	0.92021	0.9491	NaN	1	0	Median	250550000	130570000	119980000	48140000	20750000	27390000	44997000	22129000	22868000	58199000	32912000	25287000	99214000	54779000	44436000	28763	4251	27204	178466;178467;178468;178469	241259;241260;241261;241262	241262			4	
LAAIAESGVER	0	Unmodified	1114.5982	0.59823728	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	5.94	4	4	6			1	3	4		4	7	5	6	36.505	32.44	2	2.1908E-07	27513	160511_QHF_FH_JSI12i_2	122.13	76.417			0.95262	0.98091	22.831	22	5	Median	1.0937	0.92064	17.475	4	1	Median	0.77245	0.94196	25.275	7	2	Median	1.0143	0.9582	8.7699	5	0	Median	0.97586	1.0914	29.683	6	2	Median	5463100000	2737400000	2725700000	993390000	430210000	563180000	1461900000	819820000	642040000	1743800000	843760000	900070000	1264000000	643630000	620410000	28764	1302	27205	178470;178471;178472;178473;178474;178475;178476;178477;178478;178479;178480;178481;178482;178483;178484;178485;178486;178487;178488;178489;178490;178491	241263;241264;241265;241266;241267;241268;241269;241270;241271;241272;241273;241274;241275;241276;241277;241278;241279;241280;241281;241282;241283;241284;241285;241286;241287;241288;241289;241290;241291;241292;241293;241294;241295;241296;241297;241298;241299	241268			37	
LAAIGEATR	0	Unmodified	900.50288	0.50288033	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	24.059	23.191	2	0.015309	19206	160511_QHF_FH_JSI12i_2	44.349	13.12			1.2527	1.3905	7.9475	4	0	Linear	1.3431	1.139	NaN	1	0	Median	0.96955	1.1962	NaN	1	0	Median	1.3275	1.3589	NaN	1	0	Median	1.182	1.2985	NaN	1	0	Median	334440000	154650000	179790000	54838000	20297000	34542000	61603000	36048000	25554000	138150000	59770000	78377000	79850000	38537000	41313000	28765	2636	27206	178492;178493;178494;178495	241300;241301;241302;241303	241300			4	
LAAIVAK	1	Unmodified	684.45341	0.45341094	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.57	3	4	4			1			1	3	3	4	3	25.982	23.332	1;2	0.009769	21951	160511_QHF_FH_JSI10i_2	77.72	41.163			0.72777	0.85497	41.822	13	5	Median	1.241	0.95103	27.623	3	1	Median	0.71832	1.0361	11.626	3	0	Plateau	0.55407	0.54522	55.498	4	2	Median	0.53679	0.55665	25.406	3	2	Median	13972000000	6731600000	7240900000	2856700000	1040000000	1816700000	3793300000	1924800000	1868500000	4706200000	2445300000	2260900000	2616300000	1321500000	1294800000	28766	1497	27207	178496;178497;178498;178499;178500;178501;178502;178503;178504;178505;178506;178507;178508	241304;241305;241306;241307;241308;241309;241310;241311;241312;241313;241314;241315;241316;241317	241316			14	
LAALASDFSEDMLQEK	1	Unmodified	1766.8397	0.83966612	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	82.943	82.323	2	1.8448E-07	71200	160511_QHF_FH_JSI12i_2	141.38	125.84			0.85754	0.99512	16.746	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.85136	0.99512	NaN	1	1	Median	1.1349	1.1431	NaN	1	1	Median	1.2419	1.3888	NaN	1	1	Median	216880000	88489000	128400000	0	0	0	72510000	32748000	39761000	71996000	29833000	42163000	72378000	25907000	46471000	28767	3765	27208	178509;178510;178511	241318;241319;241320	241318			3	
LAALEEQR	0	Unmodified	928.49779	0.49779495	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	22.06	21.278	2	0.0034465	17567	160511_QHF_FH_JSI12i_2	72.485	17.935			1.064	1.2898	30.939	3	0	Median	NaN	NaN	NaN	0	0	Median	1.064	1.2898	NaN	1	0	Median	1.3271	1.3299	NaN	1	0	Median	0.70069	0.76689	NaN	1	0	Median	209210000	97221000	111990000	0	0	0	43303000	21114000	22189000	103760000	44141000	59620000	62151000	31966000	30184000	28768	150	27209	178512;178513;178514	241321;241322;241323;241324	241321			4	
LAALELILHLAPR	0	Unmodified	1428.8817	0.88166977	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.384	86.99	3	9.8242E-09	47004	160513_QHF_FH_JSI12Kac_6	111.39	90.159			0.99509	0.94248	21.768	4	0	Median	1.0455	0.88688	NaN	1	0	Median	0.71232	0.8174	NaN	1	0	Median	1.4021	1.3436	NaN	1	0	Median	0.94709	1.0016	NaN	1	0	Median	267420000	128740000	138670000	56762000	27214000	29548000	84925000	39457000	45468000	72308000	29677000	42630000	53423000	32395000	21028000	28769	4286	27210	178515;178516;178517;178518	241325;241326;241327;241328;241329;241330;241331	241329			7	
LAALNPESNTAGLDIFAK	1	Unmodified	1843.968	0.96797818	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	2.7	10	8	6					1		6	5	8	6	89.243	88.352	2;3	7.9628E-160	78391	160511_QHF_FH_JSI9i_2	303	260.67			0.98888	0.96628	33.236	25	7	Median	1.0967	0.91335	8.299	6	2	Median	0.78315	0.92516	3.3577	5	0	Median	0.98625	0.97397	55.63	8	3	Median	1.0086	1.0963	17.141	6	2	Median	8847500000	4264500000	4583000000	1726100000	777520000	948620000	2091400000	1164100000	927300000	3016200000	1303700000	1712500000	2013800000	1019200000	994580000	28770	119	27211	178519;178520;178521;178522;178523;178524;178525;178526;178527;178528;178529;178530;178531;178532;178533;178534;178535;178536;178537;178538;178539;178540;178541;178542;178543	241332;241333;241334;241335;241336;241337;241338;241339;241340;241341;241342;241343;241344;241345;241346;241347;241348;241349;241350;241351;241352;241353;241354;241355;241356;241357;241358;241359;241360;241361;241362;241363;241364;241365;241366;241367;241368;241369;241370;241371;241372;241373;241374;241375;241376;241377;241378;241379;241380;241381;241382;241383;241384;241385;241386;241387;241388;241389;241390;241391	241374			56	
LAALPENPPAIDWAYYK	1	Unmodified	1930.9829	0.98289996	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.95	0.759	6	8	5							4	4	6	5	93.085	92.614	2;3	2.1047E-40	81522	160511_QHF_FH_JSI9i_2	204.48	191.47			0.99775	0.99663	16.856	17	5	Median	1.1426	0.95395	17.853	4	1	Median	0.83176	0.93394	11.946	4	1	Linear	0.99961	0.97337	8.1496	5	2	Median	0.98777	1.0548	21.823	4	1	Median	2296700000	1147800000	1148900000	395750000	175120000	220630000	590900000	323260000	267630000	755360000	379520000	375850000	554690000	269930000	284750000	28771	589	27212	178544;178545;178546;178547;178548;178549;178550;178551;178552;178553;178554;178555;178556;178557;178558;178559;178560;178561;178562	241392;241393;241394;241395;241396;241397;241398;241399;241400;241401;241402;241403;241404;241405;241406;241407;241408;241409;241410;241411;241412;241413;241414;241415;241416;241417;241418;241419;241420;241421;241422;241423;241424;241425;241426;241427;241428;241429;241430;241431;241432;241433;241434;241435;241436;241437	241424			46	
LAALPNVYEVISK	1	Unmodified	1415.8024	0.8024164	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							3	4	4	5	89.317	88.774	2;3	7.7121E-06	77125	160511_QHF_FH_JSI12i_3	129.89	99.325			0.95841	0.93606	9.4898	11	1	Median	1.0666	0.89224	0.3642	2	0	Median	0.75252	0.93606	9.397	3	0	Median	0.95841	0.9302	2.5014	3	0	Median	0.95927	1.0501	11.307	3	1	Median	1464600000	764920000	699730000	242100000	118890000	123210000	341500000	191940000	149560000	501360000	275750000	225610000	379690000	178340000	201340000	28772	1410	27213	178563;178564;178565;178566;178567;178568;178569;178570;178571;178572;178573;178574;178575;178576;178577;178578	241438;241439;241440;241441;241442;241443;241444;241445;241446;241447;241448;241449;241450;241451;241452;241453;241454;241455;241456;241457;241458;241459;241460;241461;241462;241463;241464;241465;241466;241467;241468;241469	241468			31	
LAALPVAGALIGGMVGGPIGLLAGFK	1	Unmodified	2362.381	0.38104463	1886	P56962	STX17	Syntaxin-17	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	104.11	104.11	3	0.00035318	90810	160511_QHF_FH_JSI12i_3	45.423	40.619			0.92904	1.0047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92904	1.0047	NaN	1	1	Median	5788300	2130800	3657500	0	0	0	0	0	0	0	0	0	5788300	2130800	3657500	28773	1886	27214	178579	241470	241470			1	
LAALQGAHAWILQVPSEHLAMNFHEVLADLGSK	1	Unmodified	3565.8504	0.850393	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.554	87.16	4;5	2.489E-125	49043	160513_QHF_FH_JSI9Kac_6	243.69	230.3			0.90104	0.86439	24.409	8	1	Median	1.1316	0.96406	5.7349	2	0	Median	0.61873	0.73982	12.31	2	0	Median	1.394	1.3106	3.9513	2	0	Median	0.73903	0.78867	1.2338	2	1	Median	2796500000	1471200000	1325300000	619540000	267620000	351920000	1054800000	611960000	442840000	588460000	232950000	355510000	533660000	358640000	175020000	28774	950	27215	178580;178581;178582;178583;178584;178585;178586;178587	241471;241472;241473;241474;241475;241476;241477;241478;241479;241480;241481;241482	241473			12	
LAALQGAHAWILQVPSEHLAMNFHEVLADLGSK	1	Oxidation (M)	3581.8453	0.84530762	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			94.052	88.332	5	1.7878E-14	50781	160513_QHF_FH_JSI10Kac_6	96.686	81.982			1.3896	1.6105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3896	1.6105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81558000	48204000	33354000	0	0	0	81558000	48204000	33354000	0	0	0	0	0	0	28775	950	27215	178588	241483	241483		523	1	
LAALQGR	0	Unmodified	727.43407	0.43407249	2252;4148	Q07065;Q96K21	CKAP4;ZFYVE19	Cytoskeleton-associated protein 4;Abscission/NoCut checkpoint regulator	no	no	0	0	0	0				By MS/MS	3	0			1										1	16.234	16.285	2	0.011242	12997	160511_QHF_FH_JSI12i_3	71.359	30.673			0.95094	0.96241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95094	0.96241	NaN	1	0	Median	634380000	306900000	327480000	0	0	0	0	0	0	0	0	0	634380000	306900000	327480000	28776	2252;4148	27216	178589	241484	241484			1	
LAALSASLAR	0	Unmodified	971.57638	0.57637963	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	46.322	45.469	2	0.0024135	38838	160511_QHF_FH_JSI12i_3	60.019	28.79			0.96225	0.98245	18.818	4	0	Median	1.4445	1.1968	NaN	1	0	Median	0.99069	1.1123	NaN	1	0	Median	0.93462	0.86776	NaN	1	0	Median	0.81348	0.81166	NaN	1	0	Median	390380000	183340000	207040000	105380000	36969000	68407000	102150000	56168000	45981000	78453000	41191000	37262000	104400000	49013000	55386000	28777	150	27217	178590;178591;178592;178593	241485;241486;241487;241488	241488			4	
LAALTQGSYLHQR	0	Unmodified	1456.7787	0.77866126	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	2	1	1	1	46.077	39.854	3	6.8982E-18	20799	160513_QHF_FH_JSI12Kac_6	129.37	117.39			0.95668	1.0492	65.73	5	2	Median	0.86718	0.7002	122.62	2	2	Median	0.76601	0.91144	NaN	1	0	Median	1.2239	1.1848	NaN	1	0	Median	0.95668	1.0492	NaN	1	0	Median	161960000	78329000	83628000	100000000	44397000	55607000	38479000	21611000	16868000	8790800	5468400	3322400	14683000	6852500	7830500	28778	5637	27218	178594;178595;178596;178597;178598	241489;241490;241491;241492;241493;241494;241495	241494			7	
LAAMPDHTDVSLSPEER	0	Unmodified	1866.8782	0.87817689	4071	Q96FJ0	STAMBPL1	AMSH-like protease	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.284	50.757	3	0.0018121	43779	160511_QHF_FH_JSI11i_2	46.663	35.809			1.3023	1.3382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3023	1.3382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58002000	23310000	34692000	0	0	0	0	0	0	58002000	23310000	34692000	0	0	0	28779	4071	27219	178599	241496	241496			1	
LAANAFLAQR	0	Unmodified	1073.5982	0.5981777	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	50.399	49.483	2	7.6106E-11	42218	160511_QHF_FH_JSI12i_3	143.61	123.91			0.98123	1.0465	13.267	8	0	Median	1.4348	1.2027	1.3658	2	0	Median	0.87352	1.0486	13.357	2	0	Median	0.98011	0.95178	4.1197	2	0	Median	0.90131	0.97526	19.262	2	0	Median	1481600000	768930000	712690000	333320000	154010000	179310000	414450000	241940000	172500000	303150000	153140000	150010000	430700000	219830000	210870000	28780	440	27220	178600;178601;178602;178603;178604;178605;178606;178607	241497;241498;241499;241500;241501;241502	241502			6	
LAANSDHLMQIQK	1	Unmodified	1467.7504	0.7503976	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	38.115	37.436	2;3	2.7922E-12	31674	160511_QHF_FH_JSI12i_3	120.09	105.88			0.81085	0.8269	87.07	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47591	0.44675	NaN	1	1	Median	1.3815	1.5305	NaN	1	1	Median	47858000	26157000	21701000	0	0	0	0	0	0	19648000	14765000	4882500	28210000	11392000	16818000	28781	5039	27221	178608;178609;178610;178611	241503;241504;241505;241506	241506			4	
LAANTLSTPSGSSLQRPK	1	Unmodified	1826.985	0.98502522	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			40.174	38.665	3	7.2278E-05	31541	160511_QHF_FH_JSI9i_3	69.979	58.717			1.1316	1.0939	5.4812	2	1	Median	1.2829	1.0523	NaN	1	0	Median	0.99816	1.1371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81368000	38347000	43021000	45166000	20933000	24233000	36202000	17415000	18788000	0	0	0	0	0	0	28782	3653	27222	178612;178613	241507;241508;241509	241508			3	
LAAPLLK	1	Unmodified	724.48471	0.48471107	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	45.74	44.941	2	0.018633	38452	160511_QHF_FH_JSI11i_2	59.609	33.5			1.0211	1.0633	16.218	11	0	Median	1.1703	0.97642	15.585	2	0	Median	0.85084	1.0337	13.454	3	0	Plateau	1.2005	1.166	7.2101	3	0	Median	1.0191	1.0633	20.382	3	0	Median	1572400000	759040000	813330000	275050000	134510000	140530000	360630000	187110000	173520000	531440000	253470000	277960000	405260000	183950000	221310000	28783	1837	27223	178614;178615;178616;178617;178618;178619;178620;178621;178622;178623;178624	241510;241511;241512;241513;241514;241515;241516;241517;241518;241519;241520;241521;241522	241519			13	
LAAQENRPVTDHLDEQAVQGLK	1	Unmodified	2431.2456	0.24555002	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	48.076	47.372	3;4	1.0484E-28	41935	160511_QHF_FH_JSI11i_3	172	150.19			0.77466	0.85315	10.38	7	1	Median	1.2205	1.0284	NaN	1	0	Median	0.74208	0.88032	4.4335	2	0	Median	0.8304	0.79265	10.011	2	0	Median	0.84826	0.83241	6.4463	2	1	Median	703400000	367920000	335480000	50329000	23323000	27006000	100850000	55701000	45150000	420920000	205950000	214970000	131300000	82947000	48349000	28784	4424	27224	178625;178626;178627;178628;178629;178630;178631;178632	241523;241524;241525;241526;241527;241528;241529;241530;241531;241532	241526			10	
LAAQSCALSLVR	0	Unmodified	1287.6969	0.69690547	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.65	3	4	4					1		1	5	3	3	55.784	55.078	2	1.3211E-10	48823	160511_QHF_FH_JSI11i_3	141.89	120.44			0.81803	0.8805	27.766	10	4	Median	0.98683	0.8421	NaN	1	0	Median	0.77782	0.95529	11.617	3	2	Median	0.811	0.77989	5.9299	3	1	Median	1.4109	1.4901	52.172	3	1	Plateau	2091400000	1078600000	1012800000	155660000	81197000	74465000	427380000	245190000	182190000	813390000	441000000	372390000	695010000	311230000	383780000	28785	2265	27225	178633;178634;178635;178636;178637;178638;178639;178640;178641;178642;178643;178644	241533;241534;241535;241536;241537;241538;241539;241540;241541;241542;241543;241544;241545;241546;241547;241548;241549	241534			17	
LAAQSQHVGFAR	0	Unmodified	1283.6735	0.67346791	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			23.431	22.155	3	8.6137E-06	17863	160511_QHF_FH_JSI9i_3	87.026	75.16			0.96192	0.92105	13.018	2	0	Median	1.2643	1.0099	NaN	1	0	Median	0.73186	0.84005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100140000	44452000	55686000	53765000	21437000	32329000	46373000	23016000	23357000	0	0	0	0	0	0	28786	3004	27226	178645;178646	241550;241551;241552	241552			3	
LAASASTQQLQEVK	1	Unmodified	1472.7835	0.78347187	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.772	37.159	2	8.8136E-07	33448	160511_QHF_FH_JSI11i_1	136.53	90.932			1.0265	1.0458	22.688	4	2	Median	0.84573	0.71498	NaN	1	1	Median	1.038	1.2151	NaN	1	1	Median	1.0611	1.0289	NaN	1	0	Median	1.0151	1.063	NaN	1	0	Median	163570000	80884000	82684000	30087000	17199000	12887000	42379000	23340000	19039000	52265000	23122000	29143000	38838000	17223000	21615000	28787	661	27227	178647;178648;178649;178650	241553;241554;241555;241556;241557;241558	241554			6	
LAASFQSMEVR	0	Unmodified	1237.6125	0.61250714	3228	Q7L523;Q5VZM2	RRAGA;RRAGB	Ras-related GTP-binding protein A;Ras-related GTP-binding protein B	yes	no	0	0	0	0		By MS/MS			2	0		1									1			52.987	52.057	2	0.014509	46022	160511_QHF_FH_JSI10i_2	52.167	31.266			0.74369	0.92104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74369	0.92104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79578000	41109000	38469000	0	0	0	79578000	41109000	38469000	0	0	0	0	0	0	28788	3228	27228	178651	241559	241559			1	
LAASGEGGLQELSGHFENQK	1	Unmodified	2070.997	0.99704647	2749	Q16643	DBN1	Drebrin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.56	57.433	3	6.662E-55	50829	160511_QHF_FH_JSI11i_3	216.96	203.55			1.1122	1.1072	21.97	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3395	1.2933	NaN	1	0	Median	0.92341	0.94792	NaN	1	0	Median	320180000	155540000	164630000	0	0	0	0	0	0	172840000	79688000	93153000	147330000	75857000	71477000	28789	2749	27229	178652;178653	241560;241561;241562;241563;241564	241561			5	
LAASIAPEIYGHEDVK	1	Unmodified	1711.8781	0.87810054	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.62	4.3		7						1			2	4	2	58.12	55.773	2;3	4.7841E-18	48252	160511_QHF_FH_JSI11i_2	129.84	111.21			0.82948	0.91095	13.955	5	2	Median	NaN	NaN	NaN	0	0	Median	0.55364	0.68857	NaN	1	1	Median	0.90584	0.91994	9.7141	3	1	Median	0.82948	0.91095	NaN	1	0	Median	750580000	427600000	322980000	0	0	0	224660000	155580000	69085000	338310000	178190000	160130000	187600000	93836000	93764000	28790	1411	27230	178654;178655;178656;178657;178658;178659;178660;178661	241565;241566;241567;241568;241569;241570;241571	241568			6	
LAASIAPEIYGHEDVKK	2	Unmodified	1839.9731	0.97306355	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	3	3	2	48.74	48.028	3;4	2.9305E-08	42368	160511_QHF_FH_JSI10i_2	130.06	118.16			0.97117	0.96194	12.233	10	3	Median	1.095	0.96194	1.7125	2	0	Median	0.66265	0.82628	1.9818	3	1	Plateau	0.94603	0.99244	18.145	3	2	Median	1.0056	1.0187	1.1818	2	0	Median	1858900000	955610000	903320000	202670000	97551000	105120000	401040000	237720000	163330000	315120000	155210000	159900000	940100000	465130000	474970000	28791	1411	27231	178662;178663;178664;178665;178666;178667;178668;178669;178670;178671	241572;241573;241574;241575;241576;241577;241578;241579;241580;241581;241582;241583;241584;241585;241586	241582			15	
LAASLWLWK	1	Unmodified	1086.6226	0.62260154	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.171	77.91	2	6.2199E-05	43063	160513_QHF_FH_JSI11Kac_6	118.74	96.783			0.85865	0.96347	17.029	4	1	Median	1.2924	1.1301	NaN	1	0	Median	0.86889	1.0379	NaN	1	1	Median	0.7984	0.76766	NaN	1	0	Median	0.84853	0.89438	NaN	1	0	Median	1250100000	639710000	610380000	318270000	138730000	179540000	421530000	226040000	195490000	259680000	139970000	119710000	250600000	134970000	115630000	28792	4679	27232	178672;178673;178674;178675	241587;241588;241589;241590;241591;241592	241588			6	
LAATAVGGGFFLLQLANHTGYIK	1	Unmodified	2361.2845	0.28450171	4500	Q9BWH2	FUNDC2	FUN14 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	94.476	86.102	3	7.1154E-75	48367	160513_QHF_FH_JSI11Kac_6	215.08	199.48			1.0159	0.92784	13.422	4	0	Median	0.98353	0.85684	NaN	1	0	Median	0.72001	0.86504	NaN	1	0	Median	1.0494	0.9952	NaN	1	0	Median	1.0732	1.1382	NaN	1	0	Median	1747500000	859380000	888140000	345870000	163060000	182820000	264190000	141250000	122930000	808060000	389740000	418320000	329400000	165330000	164070000	28793	4500	27233	178676;178677;178678;178679;178680	241593;241594;241595;241596;241597;241598;241599;241600	241594			8	
LAATEQYHQVLCPGPSQDDPLHPLNK	1	Unmodified	2927.4236	0.42359074	3044	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	62.903	62.76	4	1.6952E-07	54112	160511_QHF_FH_JSI12i_3	65.753	59.177			0.92788	0.92907	10.612	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0561	1.0015	NaN	1	1	Median	0.81523	0.8619	NaN	1	0	Median	115390000	73922000	41469000	0	0	0	0	0	0	56832000	44339000	12492000	58559000	29582000	28977000	28794	3044	27234	178681;178682	241601;241602;241603;241604;241605	241602			5	
LAATNALLNSLEFTK	1	Unmodified	1604.8774	0.87737225	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.71	3	8	11							6	5	6	5	93.953	93.522	2;3	8.5353E-66	82355	160511_QHF_FH_JSI11i_2	278.41	204.63			0.95697	1.0201	25.045	21	3	Median	1.2172	1.0359	37.77	5	1	Median	0.82368	1.0201	14.973	5	0	Median	0.97231	0.96971	29.79	6	1	Median	0.91328	1.0024	15.312	5	1	Median	3948500000	1961700000	1986800000	510030000	218350000	291680000	605070000	345340000	259720000	1406500000	694210000	712280000	1426900000	703780000	723110000	28795	2585	27235	178683;178684;178685;178686;178687;178688;178689;178690;178691;178692;178693;178694;178695;178696;178697;178698;178699;178700;178701;178702;178703;178704	241606;241607;241608;241609;241610;241611;241612;241613;241614;241615;241616;241617;241618;241619;241620;241621;241622;241623;241624;241625;241626;241627;241628;241629;241630;241631;241632;241633;241634;241635;241636;241637;241638;241639;241640;241641;241642;241643;241644;241645;241646;241647;241648;241649;241650;241651;241652;241653;241654;241655;241656;241657;241658;241659;241660;241661;241662;241663;241664;241665;241666;241667;241668;241669	241652			64	
LAATTFISQGIPVYLFSDITPTPFVPFTVSHLK	1	Unmodified	3606.9378	0.93779425	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	3	1	99.471	90.96	3;4;5	3.0175E-79	52045	160513_QHF_FH_JSI9Kac_6	193.97	179.16			0.94017	0.91547	19.848	9	0	Median	1.1533	0.98747	24.369	3	0	Median	0.89065	1.056	9.2759	2	0	Median	0.92251	0.87598	7.8422	3	0	Median	0.67127	0.71096	NaN	1	0	Median	2587600000	1274500000	1313100000	876340000	353890000	522450000	742890000	386230000	356670000	789770000	421500000	368270000	178550000	112860000	65688000	28796	4080	27236	178705;178706;178707;178708;178709;178710;178711;178712;178713	241670;241671;241672;241673;241674;241675;241676;241677;241678;241679;241680	241674			10	
LAAVALINAAIQK	1	Unmodified	1294.7973	0.79727144	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.22		5	10						7	5	7	6	4	87.822	84.499	2;3	1.1757E-16	78977	160511_QHF_FH_JSI10i_2	133.57	97.63			0.7537	0.81131	16.406	19	9	Median	1.2385	1.0231	21.381	5	1	Median	0.65395	0.78491	3.8465	6	3	Median	0.86388	0.85017	14.375	5	2	Median	0.65825	0.66636	22.913	3	3	Plateau	4827400000	2515800000	2311600000	1228900000	532920000	696000000	1223900000	663810000	560110000	1551100000	891770000	659290000	823470000	427300000	396180000	28797	1600	27237	178714;178715;178716;178717;178718;178719;178720;178721;178722;178723;178724;178725;178726;178727;178728;178729;178730;178731;178732;178733;178734;178735	241681;241682;241683;241684;241685;241686;241687;241688;241689;241690;241691;241692;241693;241694;241695;241696;241697;241698;241699;241700;241701;241702;241703;241704;241705;241706;241707;241708;241709;241710;241711;241712;241713;241714;241715;241716;241717;241718;241719;241720	241708			40	
LAAVDATVNQVLASR	0	Unmodified	1526.8417	0.84165545	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.42	4.12	6	12	5				1	2		5	6	8	7	74.879	73.365	2;3	1.5799E-12	64659	160511_QHF_FH_JSI11i_2	191.26	158.03			1.0988	1.0886	24.692	25	14	Median	1.1754	1.027	29.806	5	3	Median	0.74798	0.85952	23.987	5	3	Median	1.1395	1.1633	20.705	8	5	Median	1.0988	1.1099	18.109	7	3	Median	10174000000	5144500000	5029400000	2684500000	1031200000	1653300000	2006300000	1201600000	804690000	3055300000	1703200000	1352100000	2427900000	1208600000	1219300000	28798	2628	27238	178736;178737;178738;178739;178740;178741;178742;178743;178744;178745;178746;178747;178748;178749;178750;178751;178752;178753;178754;178755;178756;178757;178758;178759;178760;178761	241721;241722;241723;241724;241725;241726;241727;241728;241729;241730;241731;241732;241733;241734;241735;241736;241737;241738;241739;241740;241741;241742;241743;241744;241745	241739			22	
LAAVQLLQFLAPK	1	Unmodified	1410.8599	0.8598717	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	3	2	3	100.47	97.717	2;3	8.5962E-37	50014	160513_QHF_FH_JSI11Kac_6	217.47	182.75			0.95902	0.90601	22.901	9	9	Median	1.1193	0.89663	19.485	3	3	Median	1.0337	1.2182	42.436	2	2	Median	0.87781	0.84511	11.58	2	2	Median	0.89458	0.91141	0.84066	2	2	Median	1788300000	951080000	837210000	387850000	194890000	192970000	378620000	207730000	170900000	372810000	193160000	179650000	649000000	355310000	293700000	28799	5106	27239	178762;178763;178764;178765;178766;178767;178768;178769;178770;178771;178772	241746;241747;241748;241749;241750;241751;241752;241753;241754;241755;241756	241749			11	
LAAVTYNGVDNNK	1	Unmodified	1377.6888	0.6888432	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2				3	4	2	40.071	34.01	2;3	2.0425E-23	30818	160511_QHF_FH_JSI12i_1	183.03	134.75			0.81909	0.89221	37.982	8	2	Median	NaN	NaN	NaN	0	0	Median	0.76532	0.92417	25.783	3	2	Median	0.94938	0.92321	46.816	3	0	Plateau	0.68746	0.74041	47.271	2	0	Median	841880000	497680000	344200000	0	0	0	273540000	166060000	107480000	304970000	172100000	132870000	263370000	159530000	103840000	28800	2725	27240	178773;178774;178775;178776;178777;178778;178779;178780;178781	241757;241758;241759;241760;241761;241762;241763;241764;241765;241766;241767	241760			11	
LAAVVSACK	1	Unmodified	917.50044	0.50043749	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.75	3	5	1				2			2	4	3	2	26.96	24.505	2	0.0008662	20502	160511_QHF_FH_JSI12i_2	81.548	58.511			1.0454	1.0177	42.244	10	3	Median	1.3869	1.1545	38.88	2	2	Median	0.66073	0.77701	21.463	3	0	Median	1.0203	1.0168	57.456	3	1	Median	1.3772	1.4861	9.8197	2	0	Median	1064400000	562820000	501590000	74261000	31813000	42449000	277990000	147450000	130540000	416570000	250580000	165990000	295590000	132980000	162610000	28801	2094	27241	178782;178783;178784;178785;178786;178787;178788;178789;178790;178791;178792	241768;241769;241770;241771;241772;241773;241774;241775;241776;241777;241778;241779;241780;241781;241782	241770			15	
LACDVDQVTR	0	Unmodified	1175.5605	0.56047157	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.542	26.96	2	0.00014929	24108	160511_QHF_FH_JSI12i_1	83.456	63.669			0.89472	0.93463	33.816	4	0	Median	0.85194	0.71788	NaN	1	0	Median	0.81763	0.95808	NaN	1	0	Median	0.93964	0.91175	NaN	1	0	Median	1.5368	1.6033	NaN	1	0	Median	541780000	257080000	284700000	64445000	32590000	31855000	159710000	80155000	79552000	163550000	84444000	79107000	154080000	59891000	94187000	28802	2094	27242	178793;178794;178795;178796	241783;241784;241785;241786;241787;241788	241785			6	
LACGVIGIAQ	0	Unmodified	1000.5376	0.53755128	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	5.18	6			3	6	4				1	4	6	8	67.948	60.596	2	1.087E-07	23846	160513_QHF_FH_JSI11Kac_2	118.06	63.507			0.89	0.96877	42.413	17	5	Median	1.6096	1.3231	NaN	1	1	Median	0.77298	0.92386	9.7299	4	0	Median	0.811	0.79072	27.416	5	3	Median	1.166	1.2133	57.19	7	1	Median	2693700000	1376800000	1316900000	461800000	186720000	275080000	696370000	372080000	324290000	840330000	479380000	360960000	695190000	338660000	356540000	28803	769	27243	178797;178798;178799;178800;178801;178802;178803;178804;178805;178806;178807;178808;178809;178810;178811;178812;178813;178814;178815	241789;241790;241791;241792;241793;241794;241795;241796;241797;241798;241799;241800;241801;241802;241803;241804;241805;241806	241791			17	
LADALQELR	0	Unmodified	1027.5662	0.56620887	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.94	4	4	4				3	3		4	4	5	5	52.98	48.831	2	9.1281E-07	42971	160511_QHF_FH_JSI9i_2	135.79	37.492			0.98037	0.9757	11.477	18	0	Median	1.2201	1.0156	10.52	4	0	Median	0.77141	0.90118	8.8072	4	0	Median	1.0543	1.0482	4.0867	5	0	Median	0.81601	0.90571	15.169	5	0	Median	12892000000	6532800000	6359400000	2490200000	1058300000	1432000000	3071100000	1799400000	1271800000	4210500000	1970300000	2240200000	3120400000	1704900000	1415500000	28804	791	27244	178816;178817;178818;178819;178820;178821;178822;178823;178824;178825;178826;178827;178828;178829;178830;178831;178832;178833	241807;241808;241809;241810;241811;241812;241813;241814;241815;241816;241817;241818;241819;241820;241821;241822;241823;241824;241825;241826;241827;241828;241829;241830;241831;241832;241833;241834;241835;241836;241837;241838;241839;241840;241841;241842	241829			36	
LADDLSTLQEK	1	Unmodified	1231.6296	0.62959699	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	44.869	44.115	2	8.4223E-05	39123	160511_QHF_FH_JSI9i_1	89.827	70.556			0.91735	0.97653	19.349	3	0	Median	0.89602	0.73028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.088	1.0537	NaN	1	0	Median	0.91735	0.97653	NaN	1	0	Median	807310000	432940000	374380000	275940000	142120000	133830000	0	0	0	278000000	157360000	120650000	253360000	133460000	119900000	28805	2587	27245	178834;178835;178836	241843;241844;241845;241846	241846			4	
LADDVDLEQVANETHGHVGADLAALCSEAALQAIR	0	Unmodified	3671.785	0.78495179	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.79	100.79	4	5.806E-47	89794	160511_QHF_FH_JSI11i_3	152.95	147.01			0.99179	0.93194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99179	0.93194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214230000	120920000	93310000	0	0	0	0	0	0	214230000	120920000	93310000	0	0	0	28806	1846	27246	178837	241847	241847			1	
LADEQLSSVIQDMAVR	0	Unmodified	1773.8931	0.89309867	3662	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	91.345	90.474	2	0.025844	78138	160511_QHF_FH_JSI12i_2	51.774	33.029			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28807	3662	27247	178838	241848	241848			1	
LADFGALHR	0	Unmodified	998.52976	0.52976379	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	37.353	36.503	3	5.4532E-06	31821	160511_QHF_FH_JSI11i_3	94.692	54.423			0.98534	1.1584	31.305	6	0	Median	1.8496	1.5261	9.5466	2	0	Median	0.95748	1.1584	23.747	2	0	Median	0.77545	0.73215	NaN	1	0	Median	0.87575	0.89492	NaN	1	0	Median	569350000	272350000	297000000	67366000	28370000	38997000	123770000	56154000	67615000	124190000	59664000	64523000	254030000	128160000	125870000	28808	4495	27248	178839;178840;178841;178842;178843;178844	241849;241850;241851;241852;241853;241854	241849			6	
LADFGFAQHMSPWDEK	1	Unmodified	1877.8407	0.84066917	3118	Q6PHR2	ULK3	Serine/threonine-protein kinase ULK3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.487	78.232	3	0.0028762	67912	160511_QHF_FH_JSI12i_3	51.606	33.242			0.6901	0.74144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6901	0.74144	NaN	1	1	Median	19771000	14107000	5663700	0	0	0	0	0	0	0	0	0	19771000	14107000	5663700	28809	3118	27249	178845	241855	241855			1	
LADFGLAR	0	Unmodified	861.47085	0.47085192	850;1252;5136;2151;1007;1717;2484;2150;627	P11802;Q07002;Q00537;Q9NYV4;P06493;P24941;Q00526;Q00535;O94921;Q00536;P50750;Q00534;Q14004	CDK4;CDK18;CDK17;CDK12;CDK1;CDK2;CDK3;CDK5;CDK14;CDK16;CDK9;CDK6;CDK13	Cyclin-dependent kinase 4;Cyclin-dependent kinase 18;Cyclin-dependent kinase 17;Cyclin-dependent kinase 12;Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 14;Cyclin-dependent kinase 16;Cyclin-dependent kinase 9;Cyclin-dependent kinase 6;Cyclin-dependent kinase 13	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	2	3	3	47.53	46.803	2	0.00036646	40056	160511_QHF_FH_JSI12i_2	110.63	0			0.93125	0.96932	6.167	10	1	Median	1.2264	1.0084	10.302	2	0	Median	0.78388	0.92948	1.8295	2	0	Median	1.0136	0.98913	8.1458	3	0	Median	0.90156	0.9885	2.31	3	1	Plateau	7719700000	3982200000	3737400000	1464700000	744910000	719800000	1399500000	688610000	710850000	2988600000	1511800000	1476800000	1866900000	1036900000	829940000	28810	1007;5136;850;1252;2151;627;1717;2150;2484	27250	178846;178847;178848;178849;178850;178851;178852;178853;178854;178855	241856;241857;241858;241859;241860;241861;241862;241863;241864;241865;241866	241859			11	
LADFGVAGQLTDTMAK	1	Unmodified	1636.8131	0.81305744	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	77.576	77.331	2	3.0663E-11	70505	160511_QHF_FH_JSI12i_1	108.59	93.904			2.002	2.1627	25.185	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1791	2.5843	NaN	1	1	Median	1.8393	1.8099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80724000	28477000	52247000	0	0	0	53230000	17508000	35722000	27494000	10970000	16524000	0	0	0	28811	2368	27251	178856;178857;178858	241867;241868;241869	241868			3	
LADFGVAGQLTDTQIK	1	Unmodified	1675.8781	0.87810054	5206;5721	Q9P289;O00506;Q9Y6E0	STK26;STK25;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	74.483	73.86	2;3	5.647E-28	63758	160511_QHF_FH_JSI12i_2	153.38	125.18			0.89597	0.90304	25.832	10	5	Median	1.0335	0.86687	10.863	2	0	Median	0.73947	0.86564	35.444	3	2	Median	0.92111	0.90741	40.814	3	2	Median	0.84492	0.90671	1.255	2	1	Median	1093000000	570180000	522830000	159090000	76392000	82699000	378740000	211010000	167730000	340220000	176530000	163690000	214960000	106250000	108710000	28812	5206;5721	27252	178859;178860;178861;178862;178863;178864;178865;178866;178867;178868;178869	241870;241871;241872;241873;241874;241875;241876;241877;241878;241879;241880;241881;241882;241883;241884	241873			15	
LADFGVLHR	0	Unmodified	1026.5611	0.56106391	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		4	8						4	4	4	4	4	48.598	45.592	2;3	1.9103E-11	39998	160511_QHF_FH_JSI11i_3	162.5	108.95			0.91531	0.90608	12.052	16	0	Median	1.2195	1.0216	9.4646	4	0	Median	0.86944	0.97653	11.738	4	0	Median	0.91878	0.87528	7.3353	4	0	Median	0.83575	0.84296	13.569	4	0	Median	18994000000	8689300000	10305000000	3277400000	1179600000	2097800000	4287300000	2205100000	2082200000	5370400000	2415400000	2955000000	6059100000	2889100000	3170000000	28813	1282	27253	178870;178871;178872;178873;178874;178875;178876;178877;178878;178879;178880;178881;178882;178883;178884;178885	241885;241886;241887;241888;241889;241890;241891;241892;241893;241894;241895;241896;241897;241898;241899;241900;241901;241902;241903;241904;241905;241906;241907;241908;241909;241910;241911;241912;241913;241914;241915;241916;241917;241918;241919;241920;241921;241922;241923;241924	241889			40	
LADFGVSAK	1	Unmodified	906.48108	0.48108226	4673;607	Q9H2G2;O94804	SLK;STK10	STE20-like serine/threonine-protein kinase;Serine/threonine-protein kinase 10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	38.456	37.771	2	0.0040651	32147	160511_QHF_FH_JSI12i_2	57.59	29.416			2.5265	2.5128	108.57	6	4	Median	1.6005	1.3419	NaN	1	0	Median	3.9881	4.7055	NaN	1	1	Median	1.4458	1.445	167.99	2	2	Median	1.8766	1.9887	140.58	2	1	Median	972920000	328890000	644040000	64406000	40142000	24263000	257170000	50041000	207130000	422110000	163850000	258250000	229230000	74850000	154390000	28814	4673;607	27254	178886;178887;178888;178889;178890;178891	241925;241926;241927;241928;241929;241930	241926			6	
LADGGATNQGR	0	Unmodified	1058.5105	0.51048491	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.0991	6.7633	2	1.4134E-05	4648	160511_QHF_FH_JSI10i_1	106.18	78.071			0.92488	1.0143	5.9743	4	0	Linear	1.2603	1.0198	NaN	1	0	Median	0.79726	0.93553	NaN	1	0	Median	0.9212	0.89318	NaN	1	0	Median	0.92859	0.99372	NaN	1	0	Median	1413500000	716280000	697230000	400140000	176200000	223950000	358190000	192580000	165620000	287270000	145770000	141490000	367910000	201730000	166170000	28815	2271	27255	178892;178893;178894;178895	241931;241932;241933	241933			3	
LADHFGGK	1	Unmodified	843.4239	0.42390173	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.492		10	7							5	3	5	4	12.554	12.1	2;3	0.0004944	9092	160511_QHF_FH_JSI12i_3	73.665	64.892			0.90343	0.97534	27.947	15	3	Median	1.1664	0.98511	34.935	4	1	Median	0.77767	0.94688	42.981	3	1	Median	1.1097	1.0903	14.89	4	1	Median	0.8824	0.92072	8.6711	4	0	Median	3594800000	1712100000	1882800000	506210000	232400000	273810000	371120000	209060000	162060000	1459500000	693360000	766100000	1258000000	577230000	680820000	28816	4910;5562	27256	178896;178897;178898;178899;178900;178901;178902;178903;178904;178905;178906;178907;178908;178909;178910;178911;178912	241934;241935;241936;241937;241938;241939;241940;241941;241942;241943;241944;241945;241946;241947;241948;241949;241950;241951;241952;241953;241954;241955;241956	241953			23	
LADINYEGR	0	Unmodified	1049.5142	0.5141733	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.708	31.106	2	0.051415	27808	160511_QHF_FH_JSI11i_1	35.511	20.36			0.89768	0.95271	13.691	4	0	Median	1.4343	1.192	NaN	1	0	Median	0.82257	0.97154	NaN	1	0	Median	0.90847	0.86508	NaN	1	0	Median	0.88701	0.93425	NaN	1	0	Median	568580000	323610000	244970000	77130000	36429000	40702000	192290000	115100000	77195000	154800000	78911000	75893000	144350000	93171000	51184000	28817	1790	27257	178913;178914;178915;178916	241957	241957			1	
LADIQIEQLNR	0	Unmodified	1311.7147	0.71466402	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.52	7	4					1			3	3	3	3	59.219	57.638	2	7.3062E-13	50930	160511_QHF_FH_JSI10i_2	142.98	122.84			1.0878	1.1299	64.621	12	6	Median	1.2958	1.1032	53.127	3	1	Median	0.9486	1.1572	15.238	3	2	Median	1.0702	1.0317	85.97	3	2	Median	1.1057	1.249	101.72	3	1	Median	2405800000	1283400000	1122500000	472060000	236620000	235440000	706470000	384450000	322030000	780810000	411910000	368910000	446500000	250400000	196100000	28818	461	27258	178917;178918;178919;178920;178921;178922;178923;178924;178925;178926;178927;178928	241958;241959;241960;241961;241962;241963;241964;241965;241966;241967;241968;241969;241970;241971;241972	241972			15	
LADKYEEAK	2	Acetyl (K)	1107.5448	0.54480473	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		31.183	22.537	2	0.02214	13740	160513_QHF_FH_JSI11Kac_3	52.278	33.3			0.25704	0.25653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25704	0.25653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5371400	4226600	1144800	0	0	0	0	0	0	5371400	4226600	1144800	0	0	0	28819	4284	27259	178929	241973	241973	3103		1	
LADLFGWSQLIYNHITTR	0	Unmodified	2147.1164	0.11637375	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	95.963	87.556	2;3	1.0615E-102	51850	160513_QHF_FH_JSI10Kac_6	230.86	187.48			0.99739	0.96916	6.0962	4	0	Median	1.1993	1.0049	NaN	1	0	Median	0.77102	0.91648	NaN	1	0	Median	1.1103	1.0437	NaN	1	0	Median	0.89594	0.93475	NaN	1	0	Median	4502400000	2428400000	2073900000	940890000	445380000	495510000	1734000000	1018700000	715370000	1062000000	542740000	519270000	765460000	421660000	343790000	28820	1440	27260	178930;178931;178932;178933;178934	241974;241975;241976;241977;241978;241979;241980	241980			7	
LADLLGK	1	Unmodified	728.44324	0.44324019	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	42.239	41.6	2	0.035531	36621	160511_QHF_FH_JSI9i_2	49.59	17.654			0.88871	1.0166	9.6614	4	0	Linear	1.0722	0.90198	NaN	1	0	Median	0.88192	1.0653	NaN	1	0	Median	0.89556	0.92678	NaN	1	0	Median	0.79166	0.84752	NaN	1	0	Median	2047300000	1006700000	1040600000	436900000	191680000	245220000	627250000	304630000	322610000	612330000	325750000	286590000	370870000	184660000	186210000	28821	2517	27261	178935;178936;178937;178938	241981;241982;241983;241984	241983			4	
LADMGIAIR	0	Unmodified	958.52699	0.52698659	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	54.433	53.486	2	0.0012426	45821	160511_QHF_FH_JSI12i_2	69.905	35.901			1.255	1.3269	32.49	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6407	1.6696	NaN	1	1	Median	0.95987	1.0545	NaN	1	0	Median	703770000	276760000	427020000	0	0	0	0	0	0	457580000	153110000	304460000	246190000	123640000	122550000	28822	5596	27262	178939;178940;178941	241985;241986;241987;241988	241986			4	
LADMHSTEISLQQR	0	Unmodified	1627.7988	0.79880436	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.56		9	6					4	1	4	4	6	6	44.714	41.678	2;3	8.1775E-22	35702	160511_QHF_FH_JSI12i_2	169.62	161.84			1.0657	1.0529	50.944	20	8	Median	1.2814	1.0687	8.0048	4	3	Median	0.82329	1.0159	12.59	4	2	Median	1.1949	1.1595	13.709	6	2	Median	0.8782	0.971	88.536	6	1	Median	3259000000	1590000000	1669000000	275150000	102650000	172510000	814490000	442250000	372240000	1155200000	477570000	677680000	1014100000	567540000	446570000	28823	558	27263	178942;178943;178944;178945;178946;178947;178948;178949;178950;178951;178952;178953;178954;178955;178956;178957;178958;178959;178960;178961	241989;241990;241991;241992;241993;241994;241995;241996;241997;241998;241999;242000;242001;242002;242003;242004;242005;242006;242007;242008;242009;242010;242011;242012;242013;242014;242015;242016;242017;242018	241994			30	
LADMHSTEISLQQR	0	Oxidation (M)	1643.7937	0.79371898	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	8.5	6.5		3						3		1		2	3	39.438	29.54	3	0.0011907	17064	160513_QHF_FH_JSI11Kac_5	57.159	52.268			0.90977	0.95297	27.47	3	0	Median	1.8381	1.4883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90977	0.90181	NaN	1	0	Median	0.89083	0.95297	NaN	1	0	Median	9594800	4276300	5318500	2575200	1254300	1321000	0	0	0	4628700	2079900	2548900	2390800	942140	1448700	28824	558	27263	178962;178963;178964;178965;178966;178967	242019;242020;242021;242022;242023	242023		210	5	
LADPVTPVETILQR	0	Unmodified	1550.8668	0.86680757	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.712	83.884	2	0.0020854	72454	160511_QHF_FH_JSI12i_2	57.836	47.883			0.75181	0.80583	2.1492	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80525	0.81817	NaN	1	0	Median	0.70192	0.79368	NaN	1	0	Median	31142000	19201000	11941000	0	0	0	0	0	0	20181000	12233000	7948600	10961000	6968400	3992500	28825	5041	27264	178968;178969	242024;242025;242026	242024			3	
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	Unmodified	3389.6173	0.61728152	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15	2				2					8	2	5	3		98.907	90.504	3;4	5.0304E-124	49741	160513_QHF_FH_JSI9Kac_6	240.26	230.11			1.1552	1.2788	23.424	5	1	Median	1.4818	1.326	5.1296	2	0	Median	1.1552	1.3754	NaN	1	1	Median	0.95862	0.93061	23.44	2	0	Median	NaN	NaN	NaN	0	0	Median	5933300000	2091500000	3841700000	5896400000	2069200000	3827200000	17334000	12172000	5161500	19499000	10144000	9355000	0	0	0	28826	2073;4359	27265	178970;178971;178972;178973;178974;178975;178976;178977;178978;178979	242027;242028;242029;242030;242031;242032;242033;242034;242035;242036;242037;242038	242032			12	
LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	Oxidation (M)	3405.6122	0.61219615	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	1	0	By MS/MS				16	0									2	2				95.738	86.671	3;4	1.0374E-162	49196	160513_QHF_FH_JSI9Kac_6	264.56	253.56			1.3955	1.1843	7.8693	2	1	Median	1.3955	1.1843	7.8693	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1583900000	520820000	1063100000	1583900000	520820000	1063100000	0	0	0	0	0	0	0	0	0	28827	2073;4359	27265	178980;178981	242039;242040	242039		1741	2	
LADQIFAYYK	1	Unmodified	1230.6285	0.62847478	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	75.87	65.328	2	0.050329	32274	160513_QHF_FH_JSI12Kac_5	37.476	23.897			1.089	1.0921	10.491	4	0	Median	1.1651	0.95835	NaN	1	0	Median	1.018	1.1921	NaN	1	0	Median	1.188	1.1667	NaN	1	0	Median	0.95888	1.0223	NaN	1	0	Median	13098000	6245700	6851800	2303300	910900	1392400	3448000	1782100	1665800	5196900	2408700	2788200	2149300	1143900	1005400	28828	3229;4066	27266	178982;178983;178984;178985	242041;242042	242042			2	
LADQPLTPK	1	Unmodified	981.5495	0.54949617	4238	Q96S82	UBL7	Ubiquitin-like protein 7	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		26.432	25.853	2	0.010307	22770	160511_QHF_FH_JSI10i_1	57.859	39.873			1.2391	1.4778	26.752	3	0	Median	1.1754	0.95106	NaN	1	0	Median	1.2391	1.4778	NaN	1	0	Median	1.5786	1.5417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160810000	59102000	101700000	51439000	24688000	26751000	54904000	19563000	35341000	54462000	14850000	39612000	0	0	0	28829	4238	27267	178986;178987;178988	242043	242043			1	
LADQSGLDVIR	0	Unmodified	1185.6354	0.63535107	3573	Q8N983	MRPL43	39S ribosomal protein L43, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				48.821	47.599	2	0.0029282	42403	160511_QHF_FH_JSI9i_1	56.432	24.111			0.20452	0.16358	NaN	1	0	Median	0.20452	0.16358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	245430000	172810000	72623000	245430000	172810000	72623000	0	0	0	0	0	0	0	0	0	28830	3573	27268	178989	242044	242044			1	
LADSDQASK	1	Unmodified	933.44034	0.44033966	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.7817	5.552	2	0.0022581	3402	160511_QHF_FH_JSI11i_1	65.474	33.346			0.82879	0.85987	6.7866	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80129	0.93297	NaN	1	0	Median	0.83859	0.81537	NaN	1	0	Median	0.82879	0.85987	NaN	1	0	Median	350320000	194260000	156070000	0	0	0	105230000	49186000	56042000	109440000	60958000	48485000	135650000	84114000	51539000	28831	2587	27269	178990;178991;178992	242045;242046;242047	242045			3	
LADSGDGAGPSPEEK	1	Unmodified	1428.6369	0.63686721	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.513	16.041	2	9.5808E-10	13335	160511_QHF_FH_JSI9i_1	146.36	132.15			1.0428	1.0429	11.822	4	0	Median	1.272	1.0611	NaN	1	0	Median	1.0271	1.1906	NaN	1	0	Median	1.0586	1.025	NaN	1	0	Median	0.86644	0.89345	NaN	1	0	Median	600430000	270420000	330010000	148660000	61361000	87303000	163120000	73968000	89151000	161460000	71504000	89952000	127190000	63588000	63599000	28832	3906	27270	178993;178994;178995;178996	242048;242049;242050;242051;242052;242053;242054;242055	242055			8	
LADSPPPQVWQLISK	1	Unmodified	1677.909	0.90900673	1001	P11441	UBL4A	Ubiquitin-like protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	2	3	1	91.448	90.946	2;3	0.00029229	82494	160511_QHF_FH_JSI10i_1	62.861	50.884			0.83151	0.85094	12.775	4	0	Median	NaN	NaN	NaN	0	0	Median	0.62915	0.71561	NaN	1	0	Median	0.92932	0.91613	9.1009	2	0	Median	0.80544	0.84293	NaN	1	0	Median	87533000	49181000	38352000	3865300	0	3865300	24464000	12555000	11908000	42269000	26244000	16024000	16935000	10382000	6553800	28833	1001	27271	178997;178998;178999;179000;179001;179002;179003	242056;242057;242058;242059;242060	242058			5	
LADVLYSGLENIR	0	Unmodified	1461.7827	0.78274359	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.968	78.79	2	0.013226	68380	160511_QHF_FH_JSI12i_2	56.359	40.468			0.57453	0.64155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57453	0.64155	NaN	1	0	Median	121570000	77661000	43914000	0	0	0	0	0	0	0	0	0	121570000	77661000	43914000	28834	1257	27272	179004	242061;242062	242061			2	
LADYFVLVAFGPHPR	0	Unmodified	1700.9039	0.90386178	664	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	88.2	79.916	3	2.7532E-07	45777	160513_QHF_FH_JSI10Kac_6	106.13	88.213			1.1306	1.0683	17.434	4	0	Median	1.1246	0.95773	NaN	1	0	Median	0.70146	0.84052	NaN	1	0	Median	1.2631	1.1917	NaN	1	0	Median	1.1366	1.2003	NaN	1	0	Median	453780000	225540000	228230000	92596000	53636000	38960000	124720000	65151000	59571000	157720000	69879000	87841000	78738000	36876000	41862000	28835	664	27273	179005;179006;179007;179008	242063;242064;242065;242066	242065			4	
LAEAEETAR	0	Unmodified	988.48254	0.48253882	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.607	10.223	2	0.00013453	8049	160511_QHF_FH_JSI12i_1	90.709	59.972			0.91832	0.93059	7.7807	4	0	Median	1.309	1.0641	NaN	1	0	Median	0.76675	0.90634	NaN	1	0	Median	0.92762	0.89838	NaN	1	0	Median	0.9091	0.95549	NaN	1	0	Median	1038100000	560190000	477950000	295200000	144720000	150480000	231020000	136950000	94074000	282440000	158060000	124380000	229470000	120460000	109010000	28836	3499	27274	179009;179010;179011;179012	242067;242068;242069;242070;242071;242072	242069			6	
LAEAHAK	1	Unmodified	738.40244	0.40243801	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.28		4					1	2		1	3	2	1	4.834	0.4841	2	0.0094388	2065	160511_QHF_FH_JSI12i_2	79.146	55.173			0.97346	1.0483	12.464	7	0	Median	1.2131	1.0483	NaN	1	0	Median	0.93131	1.0951	9.2174	3	0	Median	0.9415	0.93992	2.8625	2	0	Median	1.1815	1.3149	NaN	1	0	Median	1712200000	838360000	873880000	287790000	128180000	159600000	437140000	251440000	185700000	457000000	238950000	218050000	530320000	219780000	310540000	28837	1409	27275	179013;179014;179015;179016;179017;179018;179019	242073;242074;242075;242076;242077;242078;242079	242074			7	
LAEALPK	1	Unmodified	740.44324	0.44324019	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.97	4	1	2			1	1			3	2	2	2	26.105	22.405	2	0.012309	5927	160513_QHF_FH_JSI9Kac_3	78.616	27.043			0.84488	0.94394	20.883	9	0	Median	1.3887	1.1145	26.805	3	0	Median	0.90633	1.0497	14.611	2	0	Median	0.82772	0.8142	1.6521	2	0	Median	0.84375	0.92399	3.02	2	0	Median	6538800000	3430300000	3108500000	1403300000	543140000	860170000	1603800000	915860000	687950000	1601500000	913200000	688270000	1930200000	1058100000	872140000	28838	1172	27276	179020;179021;179022;179023;179024;179025;179026;179027;179028	242080;242081;242082;242083;242084;242085;242086;242087;242088	242086			9	
LAEALYIADRK	1	Unmodified	1261.703	0.7030367	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			8									4	4	41.718	41.61	2;3	4.2333E-06	35397	160511_QHF_FH_JSI12i_3	118.18	97.307			0.76914	0.71726	111.78	7	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1702	1.0933	91.141	4	3	Median	0.67845	0.70323	157.64	3	3	Median	563800000	263230000	300560000	0	0	0	0	0	0	232940000	98493000	134440000	330860000	164740000	166120000	28839	2443	27277	179029;179030;179031;179032;179033;179034;179035;179036	242089;242090;242091;242092;242093;242094;242095;242096;242097	242094			8	
LAEAPSPAPTPSPTPVEDLGPQTSTSPGR	0	Unmodified	2856.4141	0.41413149	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		65.109	64.711	3	0.00081972	58852	160511_QHF_FH_JSI11i_1	42.347	35.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28840	2506	27278	179037;179038	242098;242099	242098			2	
LAEAQIEELR	0	Unmodified	1170.6245	0.62445203	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	48.193	47.511	2	4.2365E-05	42897	160511_QHF_FH_JSI11i_1	94.409	60.448			0.92497	0.93101	10.142	4	0	Median	1.2366	1.0085	NaN	1	0	Median	0.72437	0.84877	NaN	1	0	Median	0.87049	0.85943	NaN	1	0	Median	0.98285	1.0264	NaN	1	0	Median	571500000	298510000	272990000	69640000	32132000	37508000	159730000	82327000	77400000	177130000	108920000	68216000	165000000	75129000	89870000	28841	4939	27279	179039;179040;179041;179042;179043	242100;242101;242102;242103;242104;242105;242106;242107	242101			8	
LAEDAPNFDGPAAEGQPGQK	1	Unmodified	2010.9283	0.9282982	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	1	3	2	47.371	45.55	2;3	7.4638E-14	40343	160511_QHF_FH_JSI9i_1	182.1	165.16			0.92136	0.9013	12.745	8	1	Median	0.94469	0.77694	4.1908	2	0	Median	0.80076	0.94256	NaN	1	0	Median	0.92007	0.89631	15.572	3	1	Median	0.89696	0.94654	6.14	2	0	Median	1036200000	478020000	558140000	307450000	142230000	165220000	93463000	46450000	47014000	375870000	167870000	208000000	259380000	121460000	137910000	28842	2084	27280	179044;179045;179046;179047;179048;179049;179050;179051	242108;242109;242110;242111;242112;242113;242114;242115;242116;242117;242118;242119;242120;242121;242122	242119			15	
LAEDEGDSEPEAVGQSR	0	Unmodified	1787.781	0.78096527	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.247	26.071	2	8.3398E-24	23095	160511_QHF_FH_JSI12i_1	136.93	121.34			1.2696	1.2335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2696	1.2335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109390000	42108000	67281000	0	0	0	0	0	0	109390000	42108000	67281000	0	0	0	28843	5330	27281	179052;179053;179054;179055	242123;242124;242125;242126	242124			4	
LAEDILNTMFDTSYSK	1	Unmodified	1846.8659	0.86588087	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	96.637	96.3	2;3	5.1157E-05	82868	160511_QHF_FH_JSI12i_2	87.647	74.855			2.4104	2.4268	37.364	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.912	1.8633	NaN	1	1	Median	3.0387	3.1606	NaN	1	1	Median	11788000	2843200	8944900	0	0	0	0	0	0	6501800	1623400	4878500	5286300	1219900	4066500	28844	2344	27282	179056;179057;179058	242127;242128;242129;242130	242127			4	
LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK	1	Unmodified	3427.5175	0.51754652	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	70.124	69.633	3;4	2.7835E-17	63387	160511_QHF_FH_JSI12i_1	87.498	85.414			0.86727	1.0516	17.757	5	1	Linear	1.0737	0.87573	NaN	1	0	Median	0.7143	0.82774	24.946	2	1	Median	1.1418	1.1237	NaN	1	0	Median	0.86727	0.89968	NaN	1	0	Median	337610000	181280000	156330000	18287000	9132900	9153800	109110000	63188000	45927000	115180000	62219000	52959000	95030000	46739000	48291000	28845	2670;2501	27283	179059;179060;179061;179062;179063	242131;242132;242133;242134;242135;242136;242137;242138;242139;242140	242134			10	
LAEEENK	1	Unmodified	831.39741	0.39741221	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	6.0181	3.3824	2	0.001442	3340	160511_QHF_FH_JSI11i_1	120.65	57.931			1.1271	1.2943	31.114	9	0	Median	1.1271	0.91372	NaN	1	0	Median	1.0871	1.2943	44.111	3	0	Median	1.0057	0.99563	27.608	3	0	Median	1.3952	1.507	19.953	2	0	Median	4953300000	1974700000	2978600000	888710000	395280000	493440000	1182800000	457440000	725370000	1356800000	526970000	829790000	1525000000	594990000	930020000	28846	2193	27284	179064;179065;179066;179067;179068;179069;179070;179071;179072	242141;242142;242143;242144;242145;242146;242147;242148;242149;242150;242151	242141			11	
LAEEHSS	0	Unmodified	771.3399	0.33989733	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.82	13	4	1			15				14	6	8	5	3.2779	-1.9962	2	0.0014966	365	160513_QHF_FH_JSI12Kac_3	107.49	104.04			1.0562	1.0689	29.654	32	3	Median	1.3005	1.0733	20.955	13	1	Median	0.93842	1.1084	32.992	6	0	Median	0.86696	0.86343	37.872	8	1	Median	1.0186	1.096	22.837	5	1	Median	5770000000	2822900000	2947000000	1642200000	713740000	928490000	1637500000	927520000	709950000	1559700000	714960000	844740000	930560000	466720000	463850000	28847	851	27285	179073;179074;179075;179076;179077;179078;179079;179080;179081;179082;179083;179084;179085;179086;179087;179088;179089;179090;179091;179092;179093;179094;179095;179096;179097;179098;179099;179100;179101;179102;179103;179104;179105	242152;242153;242154;242155;242156;242157;242158;242159;242160;242161;242162;242163;242164;242165;242166;242167;242168;242169;242170;242171;242172;242173;242174;242175;242176;242177;242178;242179;242180;242181;242182;242183;242184;242185;242186;242187;242188;242189;242190;242191;242192;242193;242194;242195	242190			44	
LAEENPDLQEAYIAK	1	Unmodified	1702.8414	0.84138068	3689	Q8TB36	GDAP1	Ganglioside-induced differentiation-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	55.321	54.743	2	0.00017182	49767	160511_QHF_FH_JSI12i_1	106.79	83.181			1.1468	1.096	28.251	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1468	1.096	NaN	1	0	Median	0.92661	0.97276	38.748	2	2	Median	135110000	65506000	69608000	0	0	0	0	0	0	46690000	19556000	27134000	88424000	45951000	42473000	28848	3689	27286	179106;179107;179108	242196;242197;242198	242198			3	
LAEEQQK	1	Unmodified	844.42905	0.42904669	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.5304	5.2384	2	0.038917	3222	160511_QHF_FH_JSI12i_1	47.916	26.145			0.87763	0.9744	8.2296	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89529	1.0328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86032	0.91932	NaN	1	0	Median	599670000	290330000	309330000	0	0	0	314640000	141620000	173020000	0	0	0	285030000	148710000	136310000	28849	1117	27287	179109;179110	242199;242200	242199			2	
LAEFQTDSQGK	1	Unmodified	1222.583	0.58298115	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.614	24.283	2	0.0061658	21589	160511_QHF_FH_JSI12i_1	62.303	43.523			0.69463	0.75959	2.8009	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64482	0.75959	NaN	1	0	Median	0.79018	0.76674	NaN	1	0	Median	0.69463	0.72751	NaN	1	1	Median	342670000	208350000	134320000	0	0	0	122980000	77049000	45934000	98603000	62853000	35750000	121090000	68451000	52634000	28850	3308	27288	179111;179112;179113	242201;242202;242203	242202			3	
LAEGEEEKPEPDISSEESVSTVEEQENETPPATSSEAEQPK	2	Unmodified	4441.978	0.9780125	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	5									2	1		2	57.344	56.547	3;4	8.6525E-20	51402	160511_QHF_FH_JSI12i_1	82.713	82.46			0.88855	0.86586	29.07	4	2	Median	1.2581	1.0283	46.434	2	2	Median	0.69647	0.81173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8885	0.9236	NaN	1	0	Median	188760000	80698000	108060000	64695000	22715000	41979000	51256000	32871000	18385000	0	0	0	72807000	25111000	47696000	28851	2927	27289	179114;179115;179116;179117;179118	242204;242205;242206;242207;242208;242209;242210;242211	242205			8	
LAEGEQILSGGVFNK	1	Unmodified	1560.8148	0.814772	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5									2	3	2	70.704	69.958	2;3	0.0002805	60276	160511_QHF_FH_JSI12i_2	100.38	63.851			0.7934	0.96743	24.388	7	4	Median	NaN	NaN	NaN	0	0	Median	0.86929	1.0171	7.0859	2	1	Median	0.64537	0.65797	39.108	3	2	Plateau	0.76853	0.84313	1.7455	2	1	Median	170590000	93731000	76858000	0	0	0	43288000	24647000	18641000	72905000	38708000	34198000	54396000	30376000	24020000	28852	1347	27290	179119;179120;179121;179122;179123;179124;179125	242212;242213;242214;242215;242216;242217;242218	242214			7	
LAEIGAPIQGNREELVER	0	Unmodified	1993.0593	0.059252799	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.643	1	5	5							3	4	3	1	54.95	54.136	2;3	5.3272E-06	46948	160511_QHF_FH_JSI11i_2	94.01	82.966			0.99384	0.98951	31.839	10	0	Median	1.0913	1.1557	13.652	3	0	Plateau	0.9156	1.0875	48.224	4	0	Median	0.95949	0.93616	3.1933	2	0	Median	0.94544	0.95182	NaN	1	0	Median	2536100000	1281200000	1254900000	574200000	262910000	311290000	789310000	404180000	385140000	999530000	520280000	479250000	173010000	93802000	79212000	28853	2412	27291	179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136	242219;242220;242221;242222;242223;242224;242225;242226;242227;242228;242229;242230	242226			12	
LAEIIWQNR	0	Unmodified	1141.6244	0.62439245	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0			By MS/MS		1	0	1											1		40.765	40.442	2	0.047359	36561	160511_QHF_FH_JSI11i_1	36.395	7.019			0.079655	0.077166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.079655	0.077166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	161930000	150530000	11398000	0	0	0	0	0	0	161930000	150530000	11398000	0	0	0	28854	1530;1750	27292	179137	242231	242231			1	
LAEIQELHQSVR	0	Unmodified	1421.7627	0.76267685	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	5.75	5.93		2	1						1	1	2		1	40.265	37.569	3	0.00033393	31905	160511_QHF_FH_JSI12i_3	62.891	52.281			1.2601	0.96058	40.044	4	1	Linear	1.46	1.2273	NaN	1	0	Median	1.4671	1.7515	55.091	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0876	1.0934	NaN	1	0	Median	147330000	66253000	81075000	23088000	11931000	11157000	37338000	19423000	17915000	0	0	0	86902000	34898000	52004000	28855	450	27293	179138;179139;179140;179141	242232;242233	242232			2	
LAEISDVWEEMK	1	Unmodified	1448.6857	0.68573166	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	82.959	82.333	2	0.0019848	73165	160511_QHF_FH_JSI10i_2	72.652	37.931			1.7803	1.9397	61.82	5	5	Median	1.7803	1.5646	NaN	1	1	Median	1.1487	1.388	47.323	2	2	Median	3.6177	3.6488	NaN	1	1	Median	4.0437	4.4894	NaN	1	1	Median	385030000	106170000	278860000	45923000	15381000	30543000	83827000	38278000	45549000	112790000	30918000	81873000	142490000	21597000	120890000	28856	2162	27294	179142;179143;179144;179145;179146	242234;242235;242236;242237;242238	242238			5	
LAEIYVNSSFYK	1	Unmodified	1432.7238	0.72383172	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							3	1	1	1	67.348	66.448	2	4.6979E-06	58905	160511_QHF_FH_JSI10i_2	119.53	93.907			0.84805	0.87631	9.4077	5	3	Median	1.1212	0.97129	13.267	2	2	Median	0.72567	0.87631	NaN	1	1	Median	0.84805	0.85849	NaN	1	0	Median	0.76736	0.84956	NaN	1	0	Median	341700000	182720000	158980000	71550000	36686000	34864000	57179000	32198000	24981000	110120000	55760000	54358000	102860000	58077000	44780000	28857	5445	27295	179147;179148;179149;179150;179151;179152	242239;242240;242241;242242;242243;242244	242244			6	
LAELEEFINGPNNAHIQQVGDR	0	Unmodified	2463.2142	0.21424989	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.89	2	9	10						2	4	6	6	7	76.402	75.389	2;3;4	3.4528E-86	66763	160511_QHF_FH_JSI9i_2	246.11	238.66			1.013	1.0462	32.549	20	9	Median	1.3084	1.1014	20.927	4	2	Median	0.85805	1.0504	16.448	5	2	Median	1.3995	1.3073	31.913	4	1	Median	0.76649	0.86103	43.488	7	4	Median	8161700000	3786500000	4375200000	886360000	391360000	494990000	1140600000	517610000	622990000	3444900000	1356400000	2088500000	2689800000	1521100000	1168700000	28858	2155	27296	179153;179154;179155;179156;179157;179158;179159;179160;179161;179162;179163;179164;179165;179166;179167;179168;179169;179170;179171;179172;179173;179174;179175	242245;242246;242247;242248;242249;242250;242251;242252;242253;242254;242255;242256;242257;242258;242259;242260;242261;242262;242263;242264;242265;242266;242267;242268;242269;242270;242271;242272;242273;242274;242275;242276;242277;242278;242279;242280;242281;242282;242283;242284	242265			40	
LAELHADLK	1	Unmodified	1008.5604	0.56039521	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.17	4.84		5						1		1	1	1	3	33.785	31.303	3	0.00094435	27391	160511_QHF_FH_JSI10i_2	50.108	21.15			0.90898	0.89927	67.239	6	1	Median	0.92965	0.79307	NaN	1	0	Median	0.72891	0.91451	NaN	1	0	Median	0.88877	0.88427	NaN	1	0	Median	1.54	1.6941	97.309	3	1	Median	507450000	234000000	273440000	60019000	29324000	30695000	106480000	55918000	50562000	154340000	64777000	89561000	186610000	83985000	102630000	28859	1357	27297	179176;179177;179178;179179;179180;179181	242285;242286;242287;242288;242289;242290	242290			6	
LAELLTQQHGLQCR	0	Unmodified	1665.8621	0.86207332	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			45.633	44.077	3	0.017089	36737	160511_QHF_FH_JSI10i_3	40.025	31.683			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10194000	0	10194000	0	0	0	10194000	0	10194000	0	0	0	0	0	0	28860	4749	27298	179182	242291	242291			1	
LAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNTPLEDQLR	0	Unmodified	4407.289	0.28898455	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				104.67	104.59	4	4.2655E-06	92364	160511_QHF_FH_JSI9i_2	47.099	43.724			2.1186	1.7747	NaN	1	1	Median	2.1186	1.7747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8379200	902630	7476600	8379200	902630	7476600	0	0	0	0	0	0	0	0	0	28861	1208	27299	179183	242292;242293	242293			2	
LAELQAK	1	Unmodified	771.44905	0.44905385	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	18.419	17.752	2	0.019988	15099	160511_QHF_FH_JSI11i_1	57.471	17.368			1.1069	1.0688	15.914	7	0	Median	1.4237	1.2	0.29047	2	0	Median	0.93601	1.133	27.295	2	0	Median	1.1069	1.0688	NaN	1	0	Median	0.8526	0.92272	3.2519	2	0	Median	2177400000	1140300000	1037100000	487320000	208430000	278890000	570600000	315590000	255010000	557390000	311960000	245430000	562130000	304340000	257790000	28862	196	27300	179184;179185;179186;179187;179188;179189;179190	242294;242295;242296	242294			3	
LAELQEQLK	1	Unmodified	1070.5972	0.59717465	457;2622	O60885;Q15059	BRD4;BRD3	Bromodomain-containing protein 4;Bromodomain-containing protein 3	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	40.473	39.928	2	2.6844E-05	35640	160511_QHF_FH_JSI11i_1	103.87	7.8451			0.91085	0.9644	32.261	6	0	Median	0.5808	0.46601	NaN	1	0	Median	0.75323	0.87771	4.6242	2	0	Median	1.0706	1.0377	1.6616	2	0	Median	1.1043	1.1248	NaN	1	0	Median	853250000	494450000	358800000	41592000	23246000	18346000	351930000	217730000	134200000	375180000	205930000	169250000	84542000	47540000	37002000	28863	457;2622	27301	179191;179192;179193;179194;179195;179196	242297;242298;242299;242300;242301;242302;242303;242304	242298			8	
LAELSDYRR	0	Unmodified	1121.5829	0.58292157	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.25			6					1	3	3	3	2	2	28.852	24.703	2;3	4.366E-06	20455	160511_QHF_FH_JSI10i_3	96.331	74.868			1.0188	1.1137	17.894	10	0	Median	1.6244	1.3557	9.8923	3	0	Median	0.89714	1.0179	2.7032	3	0	Plateau	1.139	1.0801	11.403	2	0	Median	0.86914	0.94281	30.19	2	0	Median	730510000	305490000	425020000	133350000	49093000	84257000	317810000	152590000	165220000	143880000	56295000	87588000	135470000	47509000	87959000	28864	4197	27302	179197;179198;179199;179200;179201;179202;179203;179204;179205;179206	242305;242306;242307;242308;242309;242310;242311;242312	242307			8	
LAEMEEPPLLPGENIK	1	Unmodified	1778.9124	0.91243713	2452	Q13614	MTMR2	Myotubularin-related protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			76.665	76.498	2	0.0018866	69344	160511_QHF_FH_JSI10i_1	67.252	48.984			0.5623	0.63589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5623	0.63589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13491000	7932700	5557900	0	0	0	13491000	7932700	5557900	0	0	0	0	0	0	28865	2452	27303	179207	242313	242313			1	
LAEMGLATQAFHYCEAIAK	1	Unmodified	2123.018	0.01798161	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	80.334	70.956	3	1.4239E-08	37494	160513_QHF_FH_JSI12Kac_6	103.99	89.374			0.98939	1.0097	15.32	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9292	0.90608	NaN	1	0	Median	1.0535	1.1253	NaN	1	0	Median	73963000	32025000	41938000	0	0	0	0	0	0	32000000	17037000	14963000	41963000	14988000	26975000	28866	235	27304	179208;179209	242314;242315;242316	242315			3	
LAEMPADSGYPAYLGAR	0	Unmodified	1780.8454	0.8454202	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								4	2	3	2	66.259	65.56	2;3	3.3811E-30	59705	160511_QHF_FH_JSI11i_1	212.9	167.54			0.99107	1.0067	8.3169	11	2	Median	1.3424	1.1095	10.265	4	2	Median	0.81894	0.97491	4.5323	2	0	Median	0.97774	0.97397	4.5687	3	0	Median	0.96845	1.0104	0.5377	2	0	Median	1647800000	811480000	836300000	428130000	194130000	234010000	186840000	108110000	78729000	526400000	237700000	288710000	506410000	271550000	234860000	28867	1479	27305	179210;179211;179212;179213;179214;179215;179216;179217;179218;179219;179220	242317;242318;242319;242320;242321;242322;242323;242324;242325;242326;242327	242317			11	
LAEMPADSGYPAYLGAR	0	Oxidation (M)	1796.8403	0.84033482	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				55.876	54.712	2	0.010577	48611	160511_QHF_FH_JSI9i_1	53.528	47.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28868	1479	27305	179221	242328	242328		1148	1	
LAEMSLEQDNIK	1	Unmodified	1389.681	0.68098063	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	50.12	49.454	2	0.0018385	44871	160511_QHF_FH_JSI12i_1	73.327	56.301			1.2062	1.2288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2062	1.2288	NaN	1	1	Median	55953000	23384000	32569000	0	0	0	0	0	0	0	0	0	55953000	23384000	32569000	28869	5675	27306	179222;179223	242329;242330	242329			2	
LAENIDAQLK	1	Unmodified	1113.603	0.60298831	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	41.724	40.512	2	0.00012467	35920	160511_QHF_FH_JSI9i_1	84.213	50.662			0.33912	0.27973	122.2	2	1	Median	0.33912	0.27973	122.2	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212390000	145260000	67137000	212390000	145260000	67137000	0	0	0	0	0	0	0	0	0	28870	1467	27307	179224;179225;179226	242331;242332;242333	242332			3	
LAENNINLIFAVTK	1	Unmodified	1558.8719	0.87189295	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	91.428	90.759	2	0.0086298	78342	160511_QHF_FH_JSI12i_2	59.418	40.746			1.201	1.2352	10.044	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3237	1.3261	NaN	1	1	Median	1.0897	1.1505	NaN	1	1	Median	31760000	14227000	17533000	0	0	0	0	0	0	18503000	7725100	10778000	13257000	6501700	6755100	28871	1136	27308	179227;179228	242334;242335	242334			2	
LAEPQSQGNSQVLLDAPIQLSK	1	Unmodified	2335.2383	0.23833938	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	4									3			1	81.177	80.435	2;3	1.0462E-10	71436	160511_QHF_FH_JSI9i_1	117.31	112.86			1.058	0.89079	9.1632	3	3	Median	1.1191	0.94403	8.2091	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81885	0.83493	NaN	1	1	Median	185320000	94616000	90707000	129040000	65223000	63818000	0	0	0	0	0	0	56282000	29394000	26888000	28872	5014	27309	179229;179230;179231;179232	242336;242337;242338;242339	242337			4	
LAEPSQLLK	1	Unmodified	997.5808	0.5807963	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	48.73	47.898	2	1.5335E-05	43275	160511_QHF_FH_JSI11i_1	109.11	48.428			0.901	0.87299	13.802	8	0	Median	0.97569	0.80965	13.846	2	0	Median	0.78075	0.93385	19.404	2	0	Median	1.0267	1.0172	6.071	2	0	Median	0.7702	0.82343	5.0721	2	0	Median	1289800000	701790000	587960000	244930000	115030000	129890000	303260000	178510000	124750000	418530000	201590000	216950000	323040000	206660000	116380000	28873	1065	27310	179233;179234;179235;179236;179237;179238;179239;179240	242340;242341;242342;242343;242344;242345;242346;242347;242348;242349;242350;242351;242352	242341			13	
LAEPYGK	1	Unmodified	776.40685	0.40685468	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02	4	3				2	3			2	3	4	3	20.229	16.606	2	0.0077995	14182	160511_QHF_FH_JSI11i_1	86.086	86.086			0.92975	0.95355	18.62	12	1	Median	1.1219	0.93877	21.226	2	0	Median	0.9896	1.19	26.187	3	1	Median	0.97438	0.96736	11.42	4	0	Median	0.89304	0.94602	10.165	3	0	Median	2914900000	1749200000	1165700000	628390000	329910000	298480000	754380000	488420000	265960000	727140000	425160000	301990000	804950000	505720000	299230000	28874	1556	27311	179241;179242;179243;179244;179245;179246;179247;179248;179249;179250;179251;179252	242353;242354;242355;242356;242357;242358;242359;242360;242361;242362	242353			10	
LAEQAER	0	Unmodified	815.41373	0.41373097	2051;1990;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917;P62258	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH;YWHAE	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta;14-3-3 protein epsilon	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.02	4	4	1		2	3	3	3		2	7	6	5	6.8579	2.205	2	0.00078896	4018	160511_QHF_FH_JSI12i_1	128.48	50.736			0.85916	0.92763	8.6728	20	0	Median	1.1787	1.025	8.7411	2	0	Median	0.8166	0.92804	7.9487	7	0	Median	0.88658	0.88826	8.8573	6	0	Median	0.85462	0.92722	9.2328	5	0	Median	45404000000	22151000000	23253000000	10136000000	4085600000	6050300000	12047000000	6309500000	5737100000	12275000000	6185300000	6090100000	10946000000	5570300000	5375700000	28875	1976;1288;1384;2051;1385;2224;1990	27312	179253;179254;179255;179256;179257;179258;179259;179260;179261;179262;179263;179264;179265;179266;179267;179268;179269;179270;179271;179272	242363;242364;242365;242366;242367;242368;242369;242370;242371;242372;242373;242374;242375;242376;242377;242378;242379;242380;242381;242382	242369			20	
LAEQAERYDDMAAAMK	1	Unmodified	1811.8182	0.81821917	1384;1976	P61981;P31946	YWHAG;YWHAB	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.78	7	9	7							4	6	7	6	46.509	45.725	2;3	2.305E-06	40129	160511_QHF_FH_JSI9i_2	131.26	122.3			1.0803	1.0847	9.1995	20	0	Median	1.1313	0.9418	10.395	4	0	Linear	0.86164	1.0812	9.311	5	0	Median	1.0757	1.0788	8.8689	5	0	Median	1.0902	1.1291	10.061	6	0	Median	12511000000	5879200000	6631600000	1604200000	650650000	953510000	3307000000	1751600000	1555400000	3984800000	1767800000	2217000000	3614800000	1709100000	1905600000	28876	1976;1384	27313	179273;179274;179275;179276;179277;179278;179279;179280;179281;179282;179283;179284;179285;179286;179287;179288;179289;179290;179291;179292;179293;179294;179295	242383;242384;242385;242386;242387;242388;242389;242390;242391;242392;242393;242394;242395;242396;242397;242398;242399;242400;242401;242402;242403;242404;242405;242406;242407;242408;242409;242410;242411;242412;242413;242414;242415;242416;242417;242418;242419;242420;242421;242422;242423;242424;242425;242426;242427;242428;242429	242413			47	
LAEQAERYDDMAAAMK	1	Oxidation (M)	1827.8131	0.81313379	1384;1976	P61981;P31946	YWHAG;YWHAB	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	1	1			By MS/MS	By MS/MS	2	0		2										1	1	33.459	32.594	3	0.0053692	27765	160511_QHF_FH_JSI11i_2	50.305	7.9905			1.0076	1.0707	9.2193	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0004	1.0031	NaN	1	0	Median	1.0149	1.1428	NaN	1	0	Median	287230000	135120000	152110000	0	0	0	0	0	0	130830000	57815000	73012000	156410000	77307000	79099000	28877	1976;1384	27313	179296;179297	242430;242431	242431		1023;1024	2	
LAEQAERYDDMAACMK	1	Unmodified	1900.8118	0.81175358	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.618	4	9	2							2	3	6	4	43.718	43.032	2;3	1.0957E-05	36682	160511_QHF_FH_JSI12i_2	107.07	102.83			1.0958	1.1799	25.785	14	3	Median	1.5708	1.359	21.47	2	1	Median	0.78382	0.96738	13.189	3	0	Plateau	0.95194	0.94987	23.767	5	2	Median	1.2328	1.3403	12.713	4	0	Median	3166500000	1428900000	1737700000	161350000	63183000	98163000	727060000	333490000	393580000	1005000000	536830000	468190000	1273100000	495350000	777750000	28878	2051	27314	179298;179299;179300;179301;179302;179303;179304;179305;179306;179307;179308;179309;179310;179311;179312	242432;242433;242434;242435;242436;242437;242438;242439;242440;242441;242442;242443;242444;242445;242446;242447;242448;242449;242450;242451;242452;242453;242454;242455	242439			24	
LAEQAERYDDMASAMK	1	Unmodified	1827.8131	0.81313379	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1.85	0.533	3	9	1							1	5	4	3	43.363	42.639	2;3	5.78E-06	37314	160511_QHF_FH_JSI11i_2	146.96	19.244			0.90532	1.0322	29.564	13	4	Median	0.85392	0.72794	NaN	1	0	Median	0.90532	1.0851	11.484	5	2	Median	0.9301	0.96772	47.903	4	2	Median	0.92033	0.98981	27.359	3	0	Median	2280400000	1125800000	1154600000	329190000	127330000	201860000	783860000	453910000	329950000	932960000	434320000	498640000	234390000	110250000	124130000	28879	2224	27315	179313;179314;179315;179316;179317;179318;179319;179320;179321;179322;179323;179324;179325	242456;242457;242458;242459;242460;242461;242462;242463;242464;242465	242459			10	
LAEQAERYDDMATCMK	1	Unmodified	1930.8223	0.82231827	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7									3	4	3	42.05	41.297	2;3	4.6469E-05	36164	160511_QHF_FH_JSI10i_2	91.457	85.334			0.9516	0.994	32.866	8	3	Median	NaN	NaN	NaN	0	0	Median	0.87064	1.049	9.2441	2	1	Median	0.7038	0.71145	32.087	3	2	Median	1.3381	1.4866	21.055	3	0	Plateau	1239100000	631530000	607600000	0	0	0	311790000	167800000	143990000	493900000	292200000	201710000	433440000	171530000	261900000	28880	1288	27316	179326;179327;179328;179329;179330;179331;179332;179333;179334;179335	242466;242467;242468;242469;242470;242471;242472;242473;242474;242475;242476;242477	242476			12	
LAEQAERYDEMVESMK	1	Unmodified	1927.8656	0.86556329	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	2	8	2							2	3	3	4	56.84	56.072	2;3	1.7334E-39	49344	160511_QHF_FH_JSI10i_2	227.42	212.73			0.98709	0.91408	28.299	11	3	Median	1.0307	0.87649	7.0866	2	0	Median	0.70937	0.86378	8.0039	2	0	Median	1.5235	1.4641	57.721	3	3	Median	0.90357	0.95137	8.8048	4	0	Median	11458000000	5686000000	5772100000	1864900000	814550000	1050400000	2591100000	1431200000	1160000000	3030100000	1641100000	1389000000	3972000000	1799200000	2172800000	28881	1990	27317	179336;179337;179338;179339;179340;179341;179342;179343;179344;179345;179346;179347	242478;242479;242480;242481;242482;242483;242484;242485;242486;242487;242488;242489;242490;242491;242492;242493;242494;242495	242491			18	
LAEQAERYDEMVESMK	1	Oxidation (M)	1943.8605	0.86047792	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		1	3	42.406	41.737	3	0.0074854	35737	160511_QHF_FH_JSI12i_3	46.926	40.652			0.84663	0.89815	27.804	5	0	Median	1.612	1.3641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0525	1.0324	NaN	1	0	Median	0.80258	0.74002	18.83	3	0	Plateau	704530000	372240000	332290000	71472000	31601000	39871000	0	0	0	152720000	80333000	72390000	480340000	260300000	220030000	28882	1990	27317	179348;179349;179350;179351;179352	242496;242497	242496		1654;1655	2	
LAEQAERYDEMVESMKK	2	Oxidation (M)	2071.9554	0.95544093	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	2			By MS/MS	By MS/MS	3	0			3									2	1	36.916	36.916	3;4	0.00019492	32205	160511_QHF_FH_JSI11i_3	78.069	67.476			1.1568	1.0819	13.033	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1568	1.0819	13.033	2	0	Median	NaN	NaN	NaN	0	0	Median	262620000	135060000	127560000	0	0	0	0	0	0	262620000	135060000	127560000	0	0	0	28883	1990	27318	179353;179354;179355	242498;242499;242500;242501	242498		1654;1655	4	
LAEQAERYDEMVESMKK	2	Unmodified	2055.9605	0.96052631	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							4	4	4	3	51.954	51.111	3;4	1.5771E-07	45225	160511_QHF_FH_JSI11i_3	126.16	116.1			0.87512	1.0245	33.492	15	4	Median	1.3655	1.1234	31.396	4	2	Median	0.9565	0.96635	12.295	4	0	Linear	0.76183	0.71881	61.316	4	2	Median	0.87512	0.88526	9.5368	3	0	Median	9915900000	4972500000	4943400000	1442900000	723160000	719750000	2201500000	949930000	1251500000	4638600000	2343600000	2295100000	1632900000	955870000	677060000	28884	1990	27318	179356;179357;179358;179359;179360;179361;179362;179363;179364;179365;179366;179367;179368;179369;179370	242502;242503;242504;242505;242506;242507;242508;242509;242510;242511;242512;242513;242514;242515;242516;242517;242518;242519;242520;242521;242522;242523;242524;242525;242526	242504			25	
LAEQAERYEDMAAFMK	1	Unmodified	1901.8652	0.86516936	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.576	1	8	4							2	2	5	4	65.152	64.519	2;3	1.3645E-06	56611	160511_QHF_FH_JSI9i_2	136.27	112.66			0.96805	1.0094	8.9966	13	1	Median	1.2802	1.0743	3.1155	2	0	Median	0.84513	1.0288	10.248	2	0	Median	1.1404	1.0872	7.5868	5	1	Median	0.98299	1.0158	7.7757	4	0	Linear	4947900000	2309200000	2638700000	637690000	230170000	407520000	1006500000	569110000	437360000	1485200000	636470000	848780000	1818500000	873420000	945080000	28885	1385	27319	179371;179372;179373;179374;179375;179376;179377;179378;179379;179380;179381;179382;179383	242527;242528;242529;242530;242531;242532;242533;242534;242535;242536;242537;242538;242539;242540;242541;242542;242543;242544;242545;242546;242547;242548;242549	242536			23	
LAEQFPR	0	Unmodified	859.4552	0.45520186	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		28.474	27.902	2	0.013926	24419	160511_QHF_FH_JSI10i_2	67.035	50.108			1.0338	1.0336	9.1858	5	0	Median	1.1385	0.96519	NaN	1	0	Median	0.81226	0.97502	8.2505	2	0	Median	1.1068	1.1096	7.5826	2	0	Median	NaN	NaN	NaN	0	0	Median	953970000	457940000	496030000	243750000	101600000	142150000	376710000	192730000	183980000	333510000	163610000	169900000	0	0	0	28886	4146	27320	179384;179385;179386;179387;179388	242550	242550			1	
LAEQFVLLNLVYETTDK	1	Unmodified	1995.0565	0.056458831	747	O95994	AGR2	Anterior gradient protein 2 homolog	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									3	1			2	97.171	87.841	2;3	8.0117E-97	48039	160513_QHF_FH_JSI12Kac_6	242.07	187.03			1.1285	1.1316	13.126	3	1	Plateau	1.1285	0.99442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.067	1.1316	15.274	2	1	Median	228730000	116670000	112060000	28648000	14022000	14625000	0	0	0	0	0	0	200080000	102640000	97439000	28887	747	27321	179389;179390;179391	242551;242552	242551			2	
LAETLAK	1	Unmodified	744.43815	0.43815481	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.577	18.107	2	0.054626	15606	160511_QHF_FH_JSI12i_1	46.835	21.837			2.0312	2.1434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0312	2.1434	NaN	1	1	Median	217170000	109240000	107930000	0	0	0	0	0	0	0	0	0	217170000	109240000	107930000	28888	1578	27322	179392	242553	242553			1	
LAETLAQIYLGK	1	Unmodified	1318.7497	0.74965254	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.204	75.357	2	0.00012432	67004	160511_QHF_FH_JSI10i_2	85.377	72.85			1.0447	1.0872	44.839	4	1	Median	2.6398	2.3408	NaN	1	1	Median	0.70246	0.87237	NaN	1	0	Median	0.92386	0.94166	NaN	1	0	Median	1.1813	1.2552	NaN	1	0	Median	89889000	38637000	51252000	15891000	2982800	12908000	22160000	12113000	10047000	27784000	12744000	15040000	24054000	10797000	13257000	28889	4736	27323	179393;179394;179395;179396	242554;242555;242556;242557	242557			4	
LAETMNNIDR	0	Unmodified	1175.5605	0.56047157	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.82	27.508	2	0.0069007	24315	160511_QHF_FH_JSI10i_1	61.78	38.011			2.8255	3.2963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8255	3.2963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	305380000	34200000	271180000	0	0	0	305380000	34200000	271180000	0	0	0	0	0	0	28890	2934	27324	179397	242558	242558			1	
LAETQEEISAEVAAK	1	Unmodified	1587.7992	0.79918151	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			46.907	46.481	2	3.3124E-07	41770	160511_QHF_FH_JSI10i_1	133.15	104.94			0.68225	0.81186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68225	0.81186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76248000	50211000	26037000	0	0	0	76248000	50211000	26037000	0	0	0	0	0	0	28891	5562	27325	179398	242559	242559			1	
LAETQNIAPSFVK	1	Unmodified	1416.7613	0.76127986	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	57.561	56.611	2	3.5001E-05	49038	160511_QHF_FH_JSI11i_2	116.74	81.585			0.91985	0.90524	8.8988	3	1	Median	1.0249	0.85065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91985	0.90524	NaN	1	0	Median	0.8907	1.0139	NaN	1	0	Median	117250000	63497000	53752000	25483000	12387000	13096000	0	0	0	55813000	31312000	24501000	35954000	19798000	16156000	28892	4261	27326	179399;179400;179401	242560;242561;242562;242563	242563			4	
LAETQQEK	1	Unmodified	945.47673	0.47672516	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	6.3255	5.9286	2	0.014654	3682	160511_QHF_FH_JSI9i_1	60.589	35.738			1.1969	1.0539	18.358	3	3	Plateau	1.2809	1.0539	NaN	1	1	Median	0.98494	1.1401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76597	0.80349	NaN	1	1	Median	339370000	179600000	159780000	100220000	43547000	56676000	115700000	61034000	54661000	0	0	0	123460000	75014000	48441000	28893	2841	27327	179402;179403;179404	242564;242565;242566	242566			3	
LAETVFNFQEK	1	Unmodified	1324.6663	0.66631685	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	4.31	5	3						1		1	2	4	2	65.278	63.461	2	2.4536E-07	55378	160511_QHF_FH_JSI11i_2	121.5	59.54			0.81586	0.80375	15.499	9	6	Median	0.86168	0.73526	NaN	1	1	Median	0.63946	0.77272	5.5674	2	2	Median	0.81214	0.80508	13.927	4	3	Median	0.97898	1.0435	2.8996	2	0	Median	894680000	468170000	426500000	28394000	16683000	11711000	264470000	153590000	110880000	347880000	185610000	162270000	253930000	112300000	141640000	28894	2517	27328	179405;179406;179407;179408;179409;179410;179411;179412;179413	242567;242568;242569;242570;242571;242572;242573;242574;242575;242576;242577;242578;242579	242577			13	
LAETYLHR	0	Unmodified	1001.5294	0.52942943	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.94		7	4						2	2	2	5	4	23.972	22.166	2;3	0.00031204	18238	160511_QHF_FH_JSI12i_3	83.265	67.062			1.0081	0.99871	13.868	13	0	Median	1.243	1.0529	12.664	2	0	Median	0.69707	0.85278	4.7441	2	0	Median	0.96555	0.97286	17.224	5	0	Median	1.0233	1.0509	4.489	4	0	Median	2114300000	1172600000	941700000	297900000	147410000	150490000	266930000	174650000	92282000	859400000	490250000	369150000	690070000	360290000	329770000	28895	1271	27329	179414;179415;179416;179417;179418;179419;179420;179421;179422;179423;179424;179425;179426	242580;242581;242582;242583;242584;242585;242586;242587;242588;242589;242590;242591	242589			10	
LAEVEAALEK	1	Unmodified	1071.5812	0.58119023	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.688	45.036	2	0.0013043	40935	160511_QHF_FH_JSI12i_1	77.662	20.073			0.51119	0.54274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51119	0.54274	NaN	1	1	Median	49493000	28451000	21042000	0	0	0	0	0	0	0	0	0	49493000	28451000	21042000	28896	2636	27330	179427	242592	242592			1	
LAEVIQKHQR	1	Acetyl (K)	1262.7095	0.70951906	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		32.251	22.969	2	0.00012848	13029	160513_QHF_FH_JSI11Kac_6	98.033	82.882			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3376300	3376300	0	0	0	0	0	0	0	3376300	3376300	0	0	0	0	28897	3479	27331	179428	242593	242593	2866		1	
LAEVWMDSYKK	2	Unmodified	1368.6748	0.67477304	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	50.166	49.93	3	0.0031346	42709	160511_QHF_FH_JSI12i_3	44.299	37.822			1.1379	1.1394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1379	1.1394	NaN	1	0	Median	90393000	62363000	28030000	0	0	0	0	0	0	0	0	0	90393000	62363000	28030000	28898	3620	27332	179429	242594	242594			1	
LAEWVLTQR	0	Unmodified	1114.6135	0.61349341	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.855	57.601	2	0.013195	49529	160511_QHF_FH_JSI12i_3	67.494	42.643			1.3313	1.3611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3313	1.3611	NaN	1	1	Median	67999000	25560000	42439000	0	0	0	0	0	0	0	0	0	67999000	25560000	42439000	28899	3260	27333	179430	242595	242595			1	
LAEYYGLYR	0	Unmodified	1146.571	0.5709599	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		59.243	49.822	2	0.0037989	26421	160513_QHF_FH_JSI9Kac_6	65.246	49.584			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28900	4033	27334	179431;179432	242596;242597	242597			2	
LAFAQHQAEVAK	1	Unmodified	1311.6935	0.69353465	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	27.81	27.485	2;3	2.1721E-06	22956	160511_QHF_FH_JSI12i_3	120.06	100.06			0.54578	0.62801	93.49	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.37796	0.46204	NaN	1	1	Median	3.1541	2.924	NaN	1	1	Median	1.5195	1.5114	NaN	1	1	Median	75850000	39221000	36629000	0	0	0	32584000	23145000	9439500	15304000	6071600	9232800	27961000	10005000	17956000	28901	4237	27335	179433;179434;179435;179436	242598;242599;242600;242601	242600			4	
LAFDMATNAACASLLK	1	Unmodified	1695.8324	0.83241267	3898	Q92882	OSTF1	Osteoclast-stimulating factor 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			86.946	86.391	2	0.0084391	76773	160511_QHF_FH_JSI10i_2	47.429	22.576			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28902	3898	27336	179437	242602	242602			1	
LAFLHEK	1	Unmodified	856.48069	0.48068833	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	31.106	30.383	3	0.0075606	25292	160511_QHF_FH_JSI12i_3	47.082	27.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28903	3238	27337	179438;179439	242603;242604	242604			2	
LAFLLFK	1	Unmodified	850.53166	0.53166127	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.61		1	4						5	2	2	3	3	90.653	86.147	1;2	0.0054387	43498	160513_QHF_FH_JSI9Kac_6	94.669	84.919			0.97733	0.99317	8.5162	10	0	Median	1.2018	0.98436	7.5302	2	0	Median	0.86397	0.99317	4.938	2	0	Median	0.94157	0.88213	8.9677	3	0	Plateau	1.0475	1.0845	13.187	3	0	Plateau	4552000000	2170300000	2381700000	1141800000	525600000	616180000	1079000000	560260000	518760000	1499400000	637490000	861960000	831760000	446990000	384760000	28904	4033	27338	179440;179441;179442;179443;179444;179445;179446;179447;179448;179449	242605;242606;242607;242608;242609;242610;242611;242612;242613;242614;242615;242616;242617;242618;242619;242620;242621;242622;242623;242624;242625;242626;242627;242628	242619			23	
LAFLMHSWK	1	Unmodified	1131.5899	0.5899212	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.38			6					1	7	4	3	4	3	70.309	64.997	2;3	9.1645E-08	33851	160513_QHF_FH_JSI12Kac_6	133.57	116.21			0.98655	0.96653	49.846	14	6	Median	1.0479	0.87167	10.736	4	0	Median	0.85014	0.99726	18.564	3	0	Median	1.0843	1.033	73.735	4	4	Median	0.98804	1.0469	83.448	3	2	Median	3891600000	1964000000	1927600000	617770000	248450000	369320000	1306100000	762770000	543370000	1250200000	592630000	657530000	717550000	360200000	357360000	28905	1665	27339	179450;179451;179452;179453;179454;179455;179456;179457;179458;179459;179460;179461;179462;179463	242629;242630;242631;242632;242633;242634;242635;242636;242637;242638;242639;242640;242641;242642;242643;242644;242645;242646;242647;242648;242649;242650;242651;242652;242653;242654;242655;242656	242652			28	
LAFLMHSWK	1	Oxidation (M)	1147.5848	0.58483582	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	4	2	3	2	64.609	55.397	2;3	4.3337E-05	29535	160513_QHF_FH_JSI9Kac_6	102.62	89.832			1.0602	0.97893	17.887	9	1	Median	1.0963	0.94464	5.4799	3	1	Plateau	0.79063	0.93092	24.686	2	0	Median	1.1175	1.0921	36.54	2	0	Median	0.93872	1.001	16.974	2	0	Median	356270000	180650000	175620000	112370000	59073000	53297000	93808000	50826000	42983000	67237000	34821000	32416000	82852000	35928000	46924000	28906	1665	27339	179464;179465;179466;179467;179468;179469;179470;179471;179472;179473;179474	242657;242658;242659;242660;242661;242662;242663;242664;242665;242666;242667;242668;242669;242670;242671	242661		1353	12	
LAFLNVQAAEEALPR	0	Unmodified	1640.8886	0.88860564	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	95.243	95.036	2;3	1.5131E-07	82070	160511_QHF_FH_JSI12i_3	174.42	141.47			0.75701	0.81943	61.842	7	2	Median	1.0929	0.92257	18.077	2	0	Median	0.75701	0.92095	NaN	1	0	Median	0.51728	0.50201	100.93	2	1	Median	0.45607	0.48173	75.125	2	1	Median	555510000	362430000	193080000	76518000	28160000	48358000	36136000	20242000	15894000	170990000	109790000	61206000	271870000	204240000	67623000	28907	1558	27340	179475;179476;179477;179478;179479;179480;179481	242672;242673;242674;242675;242676;242677;242678;242679;242680;242681	242680			10	
LAFLYTYSK	1	Unmodified	1104.5855	0.58554733	5731	Q9Y6J0	CABIN1	Calcineurin-binding protein cabin-1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		74.944	65.608	2	0.026991	35664	160513_QHF_FH_JSI11Kac_6	57.859	45.069			0.93836	0.93901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93836	0.93901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36989000	17575000	19414000	0	0	0	0	0	0	36989000	17575000	19414000	0	0	0	28908	5731	27341	179482	242682	242682			1	
LAFNSLLEK	1	Unmodified	1033.5808	0.5807963	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.831	3	3	4							3	2	3	2	71.088	70.334	2	5.797E-05	61636	160511_QHF_FH_JSI11i_2	97.431	35.431			1.0491	1.0051	15.885	10	0	Median	1.2039	0.97422	5.9486	3	0	Median	0.8712	1.0258	4.7508	2	0	Median	1.3392	1.3798	30.778	3	0	Plateau	0.9583	1.0034	2.1127	2	0	Median	1070400000	502070000	568350000	139350000	58864000	80487000	90936000	49442000	41495000	422740000	193850000	228890000	417390000	199910000	217480000	28909	521	27342	179483;179484;179485;179486;179487;179488;179489;179490;179491;179492	242683;242684;242685;242686;242687;242688;242689;242690;242691;242692	242690			10	
LAFQQKPPPPPK	2	Unmodified	1346.7711	0.77105669	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	33.738	33.002	3	0.00011597	28755	160511_QHF_FH_JSI11i_3	75.819	67.515			0.90502	0.87736	7.3831	4	0	Median	0.96936	0.78042	NaN	1	0	Median	0.7357	0.88533	NaN	1	0	Median	0.99203	0.92968	NaN	1	0	Median	0.84495	0.86946	NaN	1	0	Median	435920000	208930000	226990000	92078000	44401000	47677000	90264000	47284000	42980000	110310000	56964000	53344000	143270000	60278000	82989000	28910	598	27343	179493;179494;179495;179496;179497	242693;242694;242695;242696;242697;242698;242699;242700	242694			8	
LAFQQKPPPPPKK	3	Unmodified	1474.866	0.86601971	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			27.421	26.112	4	0.0085316	21432	160511_QHF_FH_JSI10i_3	48.115	41.534			0.6991	0.84671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6991	0.84671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85508000	51559000	33949000	0	0	0	85508000	51559000	33949000	0	0	0	0	0	0	28911	598	27344	179498	242701;242702	242701			2	
LAFSSTAR	0	Unmodified	851.45012	0.45011648	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	24.773	24.113	2	0.020293	20436	160511_QHF_FH_JSI11i_3	45.952	26.105			0.99802	0.9807	12.547	4	0	Median	1.3415	1.0901	NaN	1	0	Median	0.70688	0.80789	NaN	1	0	Median	1.0524	0.99475	NaN	1	0	Median	0.9464	0.96684	NaN	1	0	Median	625530000	321890000	303640000	81801000	30025000	51776000	127440000	71680000	55762000	163620000	83481000	80135000	252670000	136700000	115970000	28912	2299	27345	179499;179500;179501;179502	242703;242704	242703			2	
LAFVLSSNSLK	1	Unmodified	1177.6707	0.67067394	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	2	1	71.376	70.791	2	7.6623E-05	59424	160511_QHF_FH_JSI10i_3	91.087	56.915			0.95779	0.95357	7.2298	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93817	1.0552	NaN	1	0	Median	1.0235	0.91729	NaN	1	0	Median	0.95779	0.95357	NaN	1	0	Median	183340000	90603000	92732000	0	0	0	31125000	17788000	13337000	48230000	22511000	25719000	103980000	50304000	53676000	28913	5221	27346	179503;179504;179505;179506	242705;242706;242707;242708	242706			3	
LAGAFSSDTSFF	0	Unmodified	1248.5663	0.56626845	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	91.021	90.571	2	0.030348	82445	160511_QHF_FH_JSI12i_1	40.067	35.455			0.98106	0.97078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98106	0.97078	NaN	1	0	Median	15381000	4828500	10552000	0	0	0	0	0	0	0	0	0	15381000	4828500	10552000	28914	2612	27347	179507	242709	242709			1	
LAGALGR	0	Unmodified	656.39696	0.3969587	2777	Q16880	UGT8	2-hydroxyacylsphingosine 1-beta-galactosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.67	0.471		1	2							1	1		1	14	13.508	2	0.03019	11557	160511_QHF_FH_JSI12i_3	52.231	0			1.0531	1.0667	7.4959	3	1	Median	1.3617	1.1337	NaN	1	1	Median	0.81059	0.97667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0531	1.0667	NaN	1	0	Median	925990000	442390000	483600000	46089000	22388000	23701000	156460000	85182000	71277000	0	0	0	723440000	334820000	388620000	28915	2777	27348	179508;179509;179510	242710;242711;242712	242712			3	
LAGANPAVITCDELLLGHEK	1	Unmodified	2120.0936	0.093589394	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	77.202	76.618	3	7.8848E-15	67235	160511_QHF_FH_JSI11i_2	152.04	128			1.0264	1.0471	25.884	6	2	Median	1.1665	1.0016	NaN	1	0	Median	0.8157	0.95689	19.02	2	1	Median	1.2374	1.2064	43.708	2	1	Median	1.211	1.354	NaN	1	0	Median	626240000	278730000	347510000	55781000	30287000	25493000	155430000	78016000	77411000	250260000	100810000	149450000	164770000	69612000	95161000	28916	2094	27349	179511;179512;179513;179514;179515;179516	242713;242714;242715;242716;242717;242718;242719;242720;242721;242722;242723	242719			11	
LAGAPAPK	1	Unmodified	723.42792	0.42792448	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.56	13.123	2	0.011016	10898	160511_QHF_FH_JSI12i_1	54.571	11.571			0.9829	1.0224	7.5488	4	0	Median	1.2857	1.0638	NaN	1	0	Median	0.94787	1.1311	NaN	1	0	Median	1.0192	0.98259	NaN	1	0	Median	0.91535	0.95915	NaN	1	0	Median	2151700000	1039700000	1112000000	550150000	233650000	316500000	580300000	301110000	279190000	565670000	261530000	304150000	455600000	243400000	212200000	28917	23	27350	179517;179518;179519;179520	242724;242725;242726;242727	242726			4	
LAGASPATVAAAAAAGSGPK	1	Unmodified	1637.8737	0.87368386	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	1	0	3									1		1	1	54.645	53.895	3	0.0018283	48737	160511_QHF_FH_JSI11i_1	58.123	51.395			1.3245	1.2947	35.046	3	0	Plateau	0.80772	0.65964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3245	1.2947	NaN	1	0	Median	1.0664	1.0905	NaN	1	0	Median	104390000	49751000	54643000	17385000	8773800	8611200	0	0	0	55643000	25284000	30359000	31366000	15694000	15672000	28918	2344	27351	179521;179522;179523	242728	242728			0	
LAGATLLIFANK	1	Unmodified	1230.7336	0.73360855	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	3	3	3	2	85.675	81.393	2;3	1.0733E-30	41763	160513_QHF_FH_JSI11Kac_6	176.38	154.93			1.1999	1.156	42.116	11	1	Median	1.3517	0.97372	15.561	3	0	Plateau	1.3718	1.6172	42.751	3	1	Median	1.1822	1.156	24.795	3	0	Median	1.7646	1.8307	88.411	2	0	Median	1509900000	636550000	873310000	391220000	149390000	241830000	502650000	244500000	258150000	403720000	149490000	254230000	212270000	93172000	119100000	28919	1450	27352	179524;179525;179526;179527;179528;179529;179530;179531;179532;179533;179534	242729;242730;242731;242732;242733;242734;242735;242736;242737;242738;242739;242740;242741;242742;242743;242744;242745;242746;242747;242748;242749;242750	242737			22	
LAGAWASEAYSPQGLKPVVSTEAPPIIFATPTK	2	Unmodified	3396.7969	0.79694367	173	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		100.95	100.81	3;4	4.7482E-24	83415	160511_QHF_FH_JSI10i_3	104.91	100.15			1.5136	1.4145	29.359	4	4	Linear	1.0171	0.83064	NaN	1	1	Median	1.3434	1.5437	2.5695	2	2	Median	1.4164	1.3199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	249450000	90252000	159200000	27234000	9163900	18070000	121310000	55209000	66104000	100900000	25878000	75023000	0	0	0	28920	173	27353	179535;179536;179537;179538	242751;242752;242753;242754	242752			4	
LAGCTVFITGASR	0	Unmodified	1351.6918	0.69182009	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.94	6.32		4	3				2	4	4	3	5	5	4	58.84	52.517	2	2.8647E-17	28370	160513_QHF_FH_JSI11Kac_6	145.91	111.38			0.95384	1.0457	16.932	17	0	Median	1.0115	0.87882	9.2608	3	0	Plateau	0.91501	1.1037	12.128	5	0	Median	0.87645	0.82865	15.764	5	0	Median	1.1294	1.2515	9.4752	4	0	Median	623000000	310560000	312440000	64529000	34332000	30197000	171460000	88490000	82965000	220790000	110350000	110440000	166220000	77390000	88831000	28921	3175	27354	179539;179540;179541;179542;179543;179544;179545;179546;179547;179548;179549;179550;179551;179552;179553;179554;179555	242755;242756;242757;242758;242759;242760;242761;242762;242763;242764;242765;242766;242767;242768;242769;242770;242771;242772;242773;242774;242775;242776	242761			22	
LAGDEGR	0	Unmodified	716.34532	0.34531706	5820				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.3403	4.7643	2	0.03446	2688	160511_QHF_FH_JSI9i_1	50.12	3.3531	+		1.3519	1.1439	NaN	1	0	Median	1.3519	1.1439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3535100000	1508200000	2026900000	3535100000	1508200000	2026900000	0	0	0	0	0	0	0	0	0	28922	5820	27355	179556	242777	242777			1	
LAGDHIEYYK	1	Unmodified	1207.5873	0.58733824	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.4		7						2		2	1	3	3	32.353	29.445	2;3	3.0077E-06	24857	160511_QHF_FH_JSI11i_2	102.52	79.298			0.94437	0.94191	31.272	9	1	Median	0.83488	0.70919	30.531	2	1	Median	0.77439	0.94191	NaN	1	0	Median	1.0851	1.107	25.078	3	0	Median	0.69403	0.76942	35.389	3	0	Plateau	1344300000	717640000	626630000	244020000	137720000	106300000	249350000	126180000	123170000	559790000	266110000	293680000	291100000	187630000	103480000	28923	2625	27356	179557;179558;179559;179560;179561;179562;179563;179564;179565	242778;242779;242780;242781;242782;242783;242784;242785;242786;242787;242788;242789;242790;242791;242792	242785			15	
LAGDKANYWWLR	1	Acetyl (K)	1533.7728	0.7728476	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.951	72.636	2	1.0654E-06	40054	160513_QHF_FH_JSI11Kac_6	124.67	91.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25522000	25522000	0	0	0	0	0	0	0	25522000	25522000	0	0	0	0	28924	1381	27357	179566	242793	242793	1322		1	
LAGEELAGEEAPQEK	1	Unmodified	1569.7522	0.75223132	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					1	3	2	40.357	36.473	2	1.0434E-12	33060	160511_QHF_FH_JSI12i_1	195.77	144.32			0.78964	0.93936	35.436	5	4	Median	NaN	NaN	NaN	0	0	Median	0.78964	0.93936	NaN	1	1	Median	0.70465	0.68198	9.4382	2	1	Median	1.3166	1.3741	4.32	2	2	Median	592010000	333070000	258940000	0	0	0	180560000	98420000	82136000	240820000	147940000	92880000	170630000	86712000	83920000	28925	3277	27358	179567;179568;179569;179570;179571;179572	242794;242795;242796;242797;242798;242799	242795			6	
LAGENMTGAAK	1	Unmodified	1061.5175	0.51754412	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.63	4	3				1	2			2	2	3	3	20.89	18.227	2	4.8363E-05	15579	160511_QHF_FH_JSI10i_2	95.775	40.244			0.97142	0.93149	17.613	10	0	Median	1.1557	0.97511	19.406	2	0	Median	0.89874	1.0994	25.904	2	0	Median	0.97035	0.94788	4.3123	3	0	Median	0.66028	0.69308	21.136	3	0	Plateau	2480300000	1371200000	1109100000	398880000	243800000	155080000	704040000	426980000	277070000	768110000	390310000	377800000	609250000	310110000	299140000	28926	736	27359	179573;179574;179575;179576;179577;179578;179579;179580;179581;179582	242800;242801;242802;242803;242804;242805;242806;242807;242808;242809;242810;242811	242811			12	
LAGESESNLR	0	Unmodified	1074.5306	0.53055165	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.767	15.298	2	0.00044464	12817	160511_QHF_FH_JSI10i_1	74.376	49.239			0.88131	0.83706	15.089	4	1	Median	1.0277	0.82365	NaN	1	0	Median	0.71246	0.8507	NaN	1	0	Median	0.78067	0.74491	NaN	1	0	Median	0.99493	1.0651	NaN	1	1	Median	852140000	449900000	402250000	243680000	109040000	134630000	185280000	110340000	74945000	153450000	89768000	63685000	269730000	140740000	128990000	28927	1846	27360	179583;179584;179585;179586	242812;242813;242814;242815;242816;242817	242817			6	
LAGESESNLRK	1	Unmodified	1202.6255	0.62551466	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.93	3	8	6				1	4	2	5	8	5	6	13.636	10.782	2;3	9.1989E-08	9153	160511_QHF_FH_JSI11i_3	118.28	89.375			0.98392	1.0084	15.86	24	0	Median	1.2384	1.0529	15.6	5	0	Median	0.91681	1.1123	18.48	8	0	Median	0.9869	0.9903	9.3287	5	0	Median	0.86487	0.95143	14.804	6	0	Median	10596000000	5464600000	5131500000	1599700000	630360000	969370000	3332300000	1717700000	1614600000	4320200000	2416800000	1903300000	1344000000	699750000	644210000	28928	1846	27361	179587;179588;179589;179590;179591;179592;179593;179594;179595;179596;179597;179598;179599;179600;179601;179602;179603;179604;179605;179606;179607;179608;179609;179610	242818;242819;242820;242821;242822;242823;242824;242825;242826;242827;242828;242829;242830;242831;242832;242833;242834;242835;242836;242837;242838;242839;242840;242841;242842	242818			25	
LAGFELR	0	Unmodified	804.44939	0.4493882	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		42.72	42.72	2	0.015907	35107	160511_QHF_FH_JSI9i_3	56.541	21.649			0.86573	0.84169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86573	0.84169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	581670000	395950000	185720000	0	0	0	0	0	0	581670000	395950000	185720000	0	0	0	28929	3583	27362	179611;179612	242843;242844	242844			2	
LAGFELRK	1	Unmodified	932.54435	0.54435122	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	37.049	36.276	3	0.00015472	29762	160511_QHF_FH_JSI9i_3	91.853	35.843			0.93049	0.83875	34.237	4	0	Median	1.0301	0.84389	NaN	1	0	Median	0.72902	0.82952	NaN	1	0	Median	1.7689	1.6571	NaN	1	0	Median	0.84052	0.83364	NaN	1	0	Median	382010000	202070000	179940000	120710000	58350000	62362000	100270000	58412000	41861000	117960000	57955000	60007000	43065000	27356000	15709000	28930	3583	27363	179613;179614;179615;179616	242845;242846;242847;242848;242849;242850	242850			6	
LAGFLDLTEQEFR	0	Unmodified	1537.7777	0.77765821	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.09	2	5	2						3	2	2	5	3	92.803	90.883	2;3	1.1027E-10	82373	160511_QHF_FH_JSI11i_2	152.07	130.08			1.004	1.0853	29.959	10	3	Median	1.2756	1.1075	NaN	1	0	Median	0.98227	1.1596	4.2837	2	0	Median	0.95969	0.90021	38.909	4	2	Median	0.98094	1.0635	26.705	3	1	Median	1097000000	580310000	516660000	134180000	66480000	67698000	313020000	169490000	143530000	343710000	170810000	172900000	306060000	173540000	132520000	28931	5494	27364	179617;179618;179619;179620;179621;179622;179623;179624;179625;179626;179627;179628	242851;242852;242853;242854;242855;242856;242857;242858;242859;242860;242861;242862;242863;242864;242865;242866;242867;242868	242861			18	
LAGGAAIK	1	Unmodified	699.42792	0.42792448	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	15.388	14.901	2	0.059427	12016	160511_QHF_FH_JSI12i_2	35.201	35.201			0.84723	0.91732	12.629	4	0	Median	NaN	NaN	NaN	0	0	Median	0.62578	0.77273	NaN	1	0	Median	0.92365	0.9374	12.044	2	0	Median	0.86846	0.97746	NaN	1	0	Median	2452200000	1463200000	988970000	0	0	0	433880000	269010000	164870000	1176700000	705610000	471090000	841620000	488610000	353010000	28932	230	27365	179629;179630;179631;179632	242869	242869			1	
LAGGAQHVR	0	Unmodified	907.4988	0.49879801	4611	Q9GZV5	WWTR1	WW domain-containing transcription regulator protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			5.8326	5.3364	3	0.0020782	3417	160511_QHF_FH_JSI10i_3	53.775	39.106			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28933	4611	27366	179633	242870	242870			1	
LAGGDWFTSR	0	Unmodified	1108.5302	0.53015772	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	55.144	54.499	2	0.012816	46806	160511_QHF_FH_JSI12i_3	44.719	28.425			1.0906	1.1206	10.119	5	0	Median	NaN	NaN	NaN	0	0	Median	0.94445	1.1082	12.404	2	0	Median	1.1885	1.1682	15.037	2	0	Median	1.0947	1.1206	NaN	1	0	Median	704640000	358280000	346360000	0	0	0	140010000	78326000	61682000	300440000	149200000	151240000	264190000	130760000	133430000	28934	1345	27367	179634;179635;179636;179637;179638	242871;242872;242873	242873			3	
LAGGHGVSASR	0	Unmodified	1010.5257	0.52574104	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				6.9872	6.4344	3	0.034042	4387	160511_QHF_FH_JSI9i_3	24.071	12.703			0.76653	0.63265	NaN	1	0	Median	0.76653	0.63265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70901000	38487000	32413000	70901000	38487000	32413000	0	0	0	0	0	0	0	0	0	28935	5696	27368	179639	242874;242875	242875			2	
LAGGQTSQPTTPLTSPQR	0	Unmodified	1838.9486	0.94863972	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.523	36.12	2	6.8777E-05	32200	160511_QHF_FH_JSI10i_1	105.03	91.366			0.82098	0.9751	16.543	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85647	1.022	NaN	1	0	Median	0.77317	0.74082	NaN	1	0	Median	0.78695	0.81408	NaN	1	0	Median	122420000	64156000	58266000	0	0	0	44122000	21909000	22213000	36903000	21180000	15724000	41396000	21067000	20329000	28936	647	27369	179640;179641;179642	242876;242877	242877			2	
LAGGYENVPTVDIHMK	1	Unmodified	1742.8662	0.86615564	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		5								1	1	1	2	61.471	60.48	3	4.1549E-05	51941	160511_QHF_FH_JSI12i_2	89.466	76.634			1.1138	1.0775	21.818	5	3	Median	1.1138	0.94662	NaN	1	0	Median	1.2967	1.6056	NaN	1	1	Median	1.0622	1.0775	NaN	1	0	Median	1.0053	1.0987	18.111	2	2	Median	1093400000	506520000	586900000	167270000	76641000	90632000	284590000	118930000	165660000	263260000	116830000	146440000	378300000	194120000	184170000	28937	430	27370	179643;179644;179645;179646;179647	242878;242879;242880;242881	242879			4	
LAGHFTQDK	1	Unmodified	1015.5087	0.50869399	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.882	10.976	2	1.5335E-05	8258	160511_QHF_FH_JSI12i_3	109.11	77.82			0.81445	0.82577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81445	0.82577	NaN	1	0	Median	101900000	52090000	49807000	0	0	0	0	0	0	0	0	0	101900000	52090000	49807000	28938	1708	27371	179648	242882	242882			1	
LAGHFTQDKALR	1	Acetyl (K)	1397.7415	0.74154747	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	42.697	33.609	2;3	2.2099E-08	18648	160513_QHF_FH_JSI10Kac_6	106.49	73.886			0.83286	0.92525	97.943	4	0	Median	3.5567	2.8954	NaN	1	0	Median	1.5436	1.8467	NaN	1	0	Median	0.42455	0.41337	NaN	1	0	Median	0.44937	0.46357	NaN	1	0	Median	85244000	46923000	38321000	15782000	4168800	11613000	28996000	13158000	15838000	21417000	15540000	5876600	19049000	14056000	4993500	28939	1708	27372	179649;179650;179651;179652;179653	242883;242884;242885;242886;242887;242888;242889	242887	1722		7	
LAGHLSEDPRFPK	1	Unmodified	1465.7678	0.76776222	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		33.5	33.5	3	0.00028896	29148	160511_QHF_FH_JSI11i_3	53.448	41.302			1.5412	1.4053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5412	1.4053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71166000	27009000	44158000	0	0	0	0	0	0	71166000	27009000	44158000	0	0	0	28940	3183	27373	179654	242890;242891	242891			2	
LAGIENQSLDQTPQSHSSEQIQAIKEEEEEK	2	Unmodified	3494.6649	0.66487946	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		56.967	56.363	4	9.1862E-13	50006	160511_QHF_FH_JSI11i_3	74.404	70.211			0.92351	0.9624	14.52	4	0	Median	1.1039	0.95188	NaN	1	0	Median	0.8019	0.97304	NaN	1	0	Median	0.92351	0.88724	23.747	2	0	Median	NaN	NaN	NaN	0	0	Median	465890000	266110000	199780000	121890000	66013000	55872000	196820000	112240000	84571000	147190000	87853000	59339000	0	0	0	28941	2535	27374	179655;179656;179657;179658	242892;242893;242894;242895;242896;242897;242898;242899;242900	242893			9	
LAGIINFQRPK	1	Unmodified	1255.7401	0.74009091	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		56.744	51.991	3	5.0799E-06	43540	160511_QHF_FH_JSI10i_3	83.883	69.007			0.67858	0.76144	53.697	4	1	Median	0.97571	0.83373	NaN	1	0	Median	0.67858	0.78552	17.23	2	0	Median	0.30252	0.27932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	141340000	85196000	56142000	25070000	10508000	14562000	80970000	48234000	32736000	35299000	26454000	8844600	0	0	0	28942	110	27375	179659;179660;179661;179662	242901;242902;242903;242904;242905	242902			5	
LAGLEYVLHFTALNGK	1	Unmodified	1744.9512	0.9512059	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.7	6.13			2						4	2		2	2	94.264	88.228	3	1.3218E-15	90100	160511_QHF_FH_JSI11i_3	157.68	126.16			1.2181	1.086	28.98	6	3	Median	1.1031	0.92335	22.455	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5048	1.4204	37.463	2	0	Median	1.1195	1.1668	20.786	2	1	Median	1268600000	567590000	701020000	395960000	195470000	200480000	0	0	0	441510000	156910000	284590000	431150000	215210000	215940000	28943	4762	27376	179663;179664;179665;179666;179667;179668	242906;242907;242908;242909;242910;242911;242912;242913	242907			8	
LAGLFNEQR	0	Unmodified	1046.5509	0.55089316	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	43.977	43.858	2	0.00090687	37488	160511_QHF_FH_JSI12i_3	71.877	43.995			0.86768	0.8505	13.355	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99063	0.93473	NaN	1	0	Median	0.75999	0.77386	NaN	1	0	Median	512700000	290470000	222240000	0	0	0	0	0	0	274960000	145840000	129120000	237740000	144630000	93115000	28944	5633	27377	179669;179670	242914;242915	242915			2	
LAGLFNEQRK	1	Unmodified	1174.6459	0.64585618	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				32.933	31.516	3	0.0015858	25799	160511_QHF_FH_JSI9i_3	52.6	36.462			1.0052	0.82171	NaN	1	0	Median	1.0052	0.82171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134410000	69953000	64459000	134410000	69953000	64459000	0	0	0	0	0	0	0	0	0	28945	5633	27378	179671	242916	242916			1	
LAGLGLQQLDEGLFSR	0	Unmodified	1715.9206	0.92063405	3041	Q6EMK4	VASN	Vasorin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			100.59	100.42	2	0.00012703	83066	160511_QHF_FH_JSI10i_3	105.65	80.799			0.74877	0.88142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74877	0.88142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16725000	9070600	7654000	0	0	0	16725000	9070600	7654000	0	0	0	0	0	0	28946	3041	27379	179672	242917;242918	242917			2	
LAGLHDAILR	0	Unmodified	1077.6295	0.62947783	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.774	43.925	3	4.8032E-10	38510	160511_QHF_FH_JSI11i_3	112.36	40.744			0.99253	1.0381	15.571	4	0	Median	1.6611	1.3661	NaN	1	0	Median	0.92999	1.0706	NaN	1	0	Median	1.0097	0.96409	NaN	1	0	Median	0.97569	1.0065	NaN	1	0	Median	1033100000	492420000	540650000	67413000	29065000	38349000	99037000	47275000	51762000	423820000	204530000	219280000	442800000	211550000	231260000	28947	464	27380	179673;179674;179675;179676	242919;242920;242921;242922	242920			4	
LAGMEEEDLAFSTK	1	Unmodified	1539.7127	0.71267469	1159	P19447	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.93	63.291	2	0.0073558	57641	160511_QHF_FH_JSI12i_1	60.598	40.939			1.2806	1.3543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2806	1.3543	NaN	1	1	Median	21931000	12026000	9905600	0	0	0	0	0	0	0	0	0	21931000	12026000	9905600	28948	1159	27381	179677	242923	242923			1	
LAGMHYLHVTLK	1	Unmodified	1381.754	0.75402642	2550	Q14644	RASA3	Ras GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	61.864	52.602	4	0.00036198	28793	160513_QHF_FH_JSI10Kac_6	67.519	53.84			1.1178	1.1261	7.8834	4	0	Median	1.337	1.1651	NaN	1	0	Median	0.85555	1.0229	NaN	1	0	Median	1.2437	1.2252	NaN	1	0	Median	1.0046	1.0884	NaN	1	0	Median	54415000	24029000	30386000	9573300	4244500	5328800	22504000	11475000	11029000	13483000	4938300	8545000	8854300	3370800	5483500	28949	2550	27382	179678;179679;179680;179681	242924;242925;242926;242927;242928	242927			5	
LAGMTGR	0	Unmodified	704.36394	0.36394401	5477	Q9UQ90	SPG7	Paraplegin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	2	2	1	10.199	9.8731	2	0.012433	7273	160511_QHF_FH_JSI12i_3	69.39	69.39			1.3246	1.3765	15.133	6	0	Median	1.4572	1.2001	NaN	1	0	Median	1.3246	1.5557	0.97857	2	0	Median	1.3922	1.3839	17.093	2	0	Median	1.0795	1.1347	NaN	1	0	Median	6470300000	2861000000	3609300000	1345100000	521100000	824010000	1670200000	659030000	1011200000	1267900000	685640000	582300000	2187000000	995190000	1191800000	28950	5477	27383	179682;179683;179684;179685;179686;179687	242929;242930;242931;242932;242933	242933			5	
LAGPQLVQMFIGDGAK	1	Oxidation (M)	1659.8654	0.86542736	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	2	4	93.245	92.655	2	2.6074E-07	76125	160511_QHF_FH_JSI9i_3	99.215	67.373			1.094	1.0693	8.728	7	2	Median	1.3622	1.1408	0.17906	2	0	Median	0.82343	0.95007	0.8903	2	0	Median	1.094	1.0159	NaN	1	1	Median	1.1217	1.1164	6.0891	2	1	Median	143710000	71804000	71903000	29186000	12450000	16735000	32197000	18827000	13370000	16275000	7079600	9195500	66050000	33448000	32602000	28951	1131	27384	179688;179689;179690;179691;179692;179693;179694;179695;179696;179697;179698	242934;242935;242936;242937;242938;242939;242940;242941;242942;242943;242944;242945;242946	242942		756	13	
LAGPQLVQMFIGDGAK	1	Unmodified	1643.8705	0.87051274	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			5							1		2	2	101.39	101.33	2	1.0509E-35	90408	160511_QHF_FH_JSI11i_3	167.44	119			1.1382	1.1561	9.8556	3	3	Median	1.6142	1.2988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1244	1.0677	NaN	1	1	Median	1.1382	1.1561	NaN	1	1	Median	3512000000	1741600000	1770500000	417260000	167140000	250120000	0	0	0	1379300000	703540000	675800000	1715400000	870870000	844570000	28952	1131	27384	179699;179700;179701;179702;179703	242947;242948;242949;242950;242951	242948			5	
LAGSLLTQALESHAEGFR	0	Unmodified	1898.985	0.98502522	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				83.829	82.547	3	0.00093419	67863	160511_QHF_FH_JSI9i_3	43.955	32.685			1.0695	0.87736	NaN	1	1	Median	1.0695	0.87736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20755000	9355700	11400000	20755000	9355700	11400000	0	0	0	0	0	0	0	0	0	28953	2466	27385	179704	242952	242952			1	
LAGSLVTQAPISAR	0	Unmodified	1382.7882	0.78816332	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	53.817	53.279	2	0.00015273	45705	160511_QHF_FH_JSI12i_3	96.604	80.715			0.76134	0.75093	21.255	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80859	0.78726	NaN	1	0	Median	0.58428	0.61118	21.823	2	1	Median	144080000	84379000	59705000	0	0	0	0	0	0	62938000	30757000	32181000	81146000	53622000	27524000	28954	303	27386	179705;179706;179707	242953;242954;242955	242955			3	
LAGTQPLEVLEAVQR	0	Unmodified	1622.8992	0.89917033	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.29	7	8	7					3		5	7	7	6	85.609	83.815	2;3	9.7065E-52	73861	160511_QHF_FH_JSI12i_3	215.85	189.81			1.0223	1.0182	11.182	25	3	Median	1.2503	1.0149	6.916	5	1	Median	0.80495	0.95228	7.0144	7	1	Median	1.0533	1.0627	5.9336	7	0	Median	1.0249	1.1119	14.021	6	1	Median	6063500000	2933200000	3130300000	1016000000	440420000	575620000	1566100000	853570000	712560000	1914500000	846330000	1068200000	1566800000	792920000	773900000	28955	1208	27387	179708;179709;179710;179711;179712;179713;179714;179715;179716;179717;179718;179719;179720;179721;179722;179723;179724;179725;179726;179727;179728;179729;179730;179731;179732	242956;242957;242958;242959;242960;242961;242962;242963;242964;242965;242966;242967;242968;242969;242970;242971;242972;242973;242974;242975;242976;242977;242978;242979;242980;242981;242982;242983;242984;242985;242986;242987;242988;242989;242990;242991;242992;242993;242994;242995;242996;242997;242998;242999	242998			44	
LAGVTALSCWLPLR	0	Unmodified	1555.8545	0.85446874	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		93.054	85.502	2	6.577E-11	47519	160513_QHF_FH_JSI11Kac_6	125.72	93.391			0.62938	0.66443	41.855	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75373	0.89327	NaN	1	1	Median	0.52554	0.49422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156740000	105500000	51248000	0	0	0	78367000	49756000	28611000	78376000	55740000	22637000	0	0	0	28956	548	27388	179733;179734	243000;243001	243000			2	
LAGVTLGQR	0	Unmodified	913.53451	0.53451481	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			35.01	33.578	2	0.0039183	27997	160511_QHF_FH_JSI10i_3	60.972	32.549			1.0778	1.0685	11.346	2	0	Median	1.432	1.1577	NaN	1	0	Median	0.81123	0.98612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168160000	85799000	82363000	85533000	40303000	45230000	82628000	45496000	37133000	0	0	0	0	0	0	28957	1273	27389	179735;179736	243002;243003	243002			2	
LAHALLHTQTK	1	Unmodified	1231.7037	0.70370541	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			8							3	2		3	15.688	15.07	2;3	2.4696E-05	11238	160511_QHF_FH_JSI12i_3	105.4	88.558			1.8318	1.7856	41.916	5	4	Median	2.1275	1.749	2.9284	2	2	Median	1.8004	2.0605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1632	1.1538	64.671	2	2	Median	203360000	80423000	122940000	80349000	25207000	55141000	60084000	21435000	38649000	0	0	0	62931000	33781000	29150000	28958	4678	27390	179737;179738;179739;179740;179741;179742;179743;179744	243004;243005;243006;243007;243008;243009;243010;243011	243009			8	
LAHEIEALK	1	Unmodified	1022.576	0.57604528	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	4	2	27.542	26.991	2;3	6.794E-05	23598	160511_QHF_FH_JSI10i_2	93.111	79.341			1.7058	1.6957	42.968	7	7	Median	1.7058	1.4365	NaN	1	1	Median	1.363	1.6663	NaN	1	1	Median	1.9516	1.8972	60.301	4	4	Median	1.6669	1.6957	NaN	1	1	Median	682640000	308020000	374610000	75535000	36191000	39344000	169460000	93393000	76063000	403870000	167770000	236100000	33773000	10669000	23104000	28959	387	27391	179745;179746;179747;179748;179749;179750;179751;179752;179753	243012;243013;243014;243015;243016;243017;243018;243019;243020;243021	243020			10	
LAHEVGWK	1	Unmodified	938.4974	0.49740102	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.95	4.1		15	20						4	10	11	11	7	21.687	20.153	2;3	0.00014282	16968	160511_QHF_FH_JSI12i_2	94.302	66.778			0.75044	0.80973	86.56	37	13	Median	1.2204	1.0301	96.201	10	4	Median	0.5689	0.69173	86.222	10	2	Median	0.70738	0.72132	91.712	10	4	Median	0.7942	0.82948	80.154	7	3	Median	22331000000	10756000000	11575000000	2518600000	986420000	1532200000	3528400000	1702000000	1826300000	6464700000	2954900000	3509800000	9818800000	5112200000	4706600000	28960	1497	27392	179754;179755;179756;179757;179758;179759;179760;179761;179762;179763;179764;179765;179766;179767;179768;179769;179770;179771;179772;179773;179774;179775;179776;179777;179778;179779;179780;179781;179782;179783;179784;179785;179786;179787;179788;179789;179790;179791;179792	243022;243023;243024;243025;243026;243027;243028;243029;243030;243031;243032;243033;243034;243035;243036;243037;243038;243039;243040;243041;243042;243043;243044;243045;243046;243047;243048;243049;243050;243051;243052;243053;243054;243055;243056;243057;243058;243059;243060;243061;243062;243063;243064;243065;243066;243067	243029			43	
LAHEVGWKYQAVTATLEEK	2	Acetyl (K)	2214.1321	0.13208339	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.133	71.964	3	2.7011E-18	39081	160513_QHF_FH_JSI11Kac_6	137.89	112.28			0.42335	0.44443	95.34	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74507	0.87213	NaN	1	0	Median	0.24055	0.22647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	232950000	173590000	59361000	0	0	0	69478000	37260000	32218000	150350000	123200000	27143000	13125000	13125000	0	28961	1497	27393	179793;179794;179795	243068;243069;243070;243071;243072	243068	1516		5	
LAHFAWISHQCFLPNK	1	Unmodified	1967.9829	0.98285715	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	75.355	67.279	4	2.0774E-11	36479	160513_QHF_FH_JSI11Kac_6	123.38	114.59			0.96524	0.89179	31.902	5	2	Median	1.0225	0.89179	NaN	1	0	Median	0.6752	0.80847	19.117	2	2	Median	0.96524	0.88831	NaN	1	0	Median	1.5271	1.6611	NaN	1	0	Median	232630000	127450000	105180000	12995000	4061000	8934400	137660000	85907000	51754000	60179000	26263000	33917000	21791000	11217000	10574000	28962	2499	27394	179796;179797;179798;179799;179800	243073;243074;243075;243076;243077	243074			5	
LAHGLLEELK	1	Unmodified	1121.6445	0.64445919	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							1	3	4	4	50.328	49.592	2;3	4.0636E-05	43655	160511_QHF_FH_JSI9i_2	82.749	59			0.88596	0.96316	37.677	12	1	Median	1.1256	0.9812	NaN	1	0	Median	0.75885	0.95149	4.8284	3	0	Plateau	1.0538	1.0298	62.202	4	1	Median	0.81786	0.86439	8.3961	4	0	Median	1679400000	812320000	867050000	57847000	19138000	38709000	181850000	124600000	57248000	792310000	294530000	497780000	647360000	374050000	273310000	28963	3860	27395	179801;179802;179803;179804;179805;179806;179807;179808;179809;179810;179811;179812	243078;243079;243080;243081;243082;243083;243084;243085;243086;243087;243088;243089;243090;243091	243084			12	
LAHHLVALYYQSEEQAEEELLDMAVLK	1	Unmodified	3141.5693	0.56925192	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		95.1	87.055	4	1.2181E-15	50754	160513_QHF_FH_JSI10Kac_6	105.03	96.059			0.62272	0.73502	46.447	3	0	Plateau	1.9477	1.6982	NaN	1	0	Median	0.62272	0.73502	NaN	1	0	Median	0.82018	0.78874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	261340000	119990000	141350000	76247000	34762000	41486000	101620000	61640000	39980000	83477000	23592000	59885000	0	0	0	28964	1409	27396	179813;179814;179815	243092;243093	243093			1	
LAHISTDPR	0	Unmodified	1008.5352	0.53524309	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	15.305	15.337	3	0.0085625	12069	160511_QHF_FH_JSI12i_3	32.32	23.106			0.87466	0.86655	14.795	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82146	0.78047	NaN	1	0	Median	0.93129	0.96211	NaN	1	0	Median	273450000	130970000	142480000	0	0	0	0	0	0	129560000	66604000	62959000	143890000	64365000	79525000	28965	3221	27397	179816;179817	243094;243095	243095			2	
LAHKYRPETK	2	Acetyl (K)	1283.6986	0.69862003	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		18.61	9.4066	4	0.015879	7070	160513_QHF_FH_JSI11Kac_6	44.299	32.086			0.21089	0.20463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21089	0.20463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14353000	12757000	1595900	0	0	0	0	0	0	14353000	12757000	1595900	0	0	0	28966	2007	27398	179818	243096	243096	2037		1	
LAHLGVQVK	1	Unmodified	963.58655	0.58655038	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.36		10	18						7	11	6	9	9	29.508	26.952	2;3	2.8276E-06	23578	160511_QHF_FH_JSI10i_2	93.429	65.255			1.1309	1.1263	89.513	32	10	Median	1.3132	1.1024	104.02	10	3	Median	0.86905	0.99737	24.344	6	2	Median	1.3036	1.2975	114.56	9	4	Median	1.0865	1.1313	75.225	7	1	Median	7503600000	4092300000	3411200000	1362400000	593100000	769350000	1267600000	676140000	591460000	2123100000	1144400000	978740000	2750400000	1678700000	1071700000	28967	816	27399	179819;179820;179821;179822;179823;179824;179825;179826;179827;179828;179829;179830;179831;179832;179833;179834;179835;179836;179837;179838;179839;179840;179841;179842;179843;179844;179845;179846;179847;179848;179849;179850;179851;179852;179853	243097;243098;243099;243100;243101;243102;243103;243104;243105;243106;243107;243108;243109;243110;243111;243112;243113;243114;243115;243116;243117;243118;243119;243120;243121;243122;243123;243124;243125;243126;243127;243128;243129;243130;243131;243132;243133;243134;243135;243136;243137;243138;243139	243122			41	
LAHLLASAQK	1	Unmodified	1050.6186	0.61857879	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	1	3	23.809	23.091	2;3	0.00071592	18877	160511_QHF_FH_JSI12i_3	84.615	75.198			0.52821	0.59375	113.07	9	8	Median	6.4262	5.2532	5.1344	2	1	Median	0.52476	0.59375	85.674	3	3	Median	0.33236	0.30936	NaN	1	1	Median	0.52821	0.55863	102.22	3	3	Median	589370000	274760000	314600000	107320000	18380000	88936000	181000000	97105000	83896000	78879000	55686000	23193000	222170000	103590000	118580000	28968	2270	27400	179854;179855;179856;179857;179858;179859;179860;179861;179862	243140;243141;243142;243143;243144;243145;243146;243147;243148	243148			9	
LAHPNKPK	2	Unmodified	903.52904	0.5290355	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	5.4804	5.2495	2;3	0.0031346	2948	160511_QHF_FH_JSI12i_3	122.98	78.006			0.9406	1.0037	11.402	8	0	Median	1.284	1.0565	0.55323	2	0	Median	0.87515	0.98946	0.99619	2	0	Median	0.85593	0.80961	7.7983	2	0	Median	0.98746	1.0167	0.8078	2	0	Median	10836000000	4986400000	5849500000	3935800000	1441100000	2494700000	3232600000	1835400000	1397200000	1477200000	614280000	862940000	2190400000	1095600000	1094700000	28969	4795	27401	179863;179864;179865;179866;179867;179868;179869;179870	243149;243150;243151;243152;243153;243154;243155;243156;243157;243158;243159;243160;243161	243158			13	
LAHPNKPK	2	Acetyl (K)	945.5396	0.53960019	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	18.151	10.144	3	0.002172	6898	160513_QHF_FH_JSI11Kac_6	71.342	47.819			0.72077	0.77278	28.666	5	0	Median	0.91501	0.76426	40.053	2	0	Median	0.87018	1.0259	NaN	1	0	Median	0.6025	0.5744	NaN	1	0	Median	0.72077	0.77278	NaN	1	0	Median	177680000	103390000	74285000	36251000	19393000	16858000	47658000	24230000	23428000	51101000	34131000	16970000	42666000	25637000	17029000	28970	4795	27401	179871;179872;179873;179874;179875	243162;243163;243164;243165;243166;243167	243163	3233		6	
LAHQQCLQR	0	Unmodified	1152.5822	0.58221006	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		8.2558	7.875	3	6.0338E-06	5679	160511_QHF_FH_JSI10i_3	89.698	77.082			1.0816	0.98847	16.854	3	1	Median	1.0816	0.90389	NaN	1	1	Median	0.86801	0.98847	NaN	1	0	Median	1.3589	1.2525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	408890000	208690000	200200000	102060000	42829000	59228000	170140000	101270000	68869000	136690000	64586000	72105000	0	0	0	28971	950	27402	179876;179877;179878;179879	243168;243169;243170;243171;243172;243173	243170			6	
LAHYIDR	0	Unmodified	886.4661	0.4661009	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		17.812	17.099	3	0.011491	20742	160511_QHF_FH_JSI10i_3	40.268	12.386			0.82723	0.958	56.944	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1543	1.3172	45.035	2	1	Median	0.606	0.58152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1093600000	606830000	486730000	0	0	0	453520000	197840000	255670000	640050000	408990000	231060000	0	0	0	28972	2207	27403	179880;179881;179882	243174;243175;243176	243175			3	
LAHYNKR	1	Acetyl (K)	942.50355	0.50354903	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q6DRA6;Q6DN03;Q99877;Q93079;P62807;P58876;Q99880;O60814;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST2H2BD;HIST2H2BC;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type 1-M;Histone H2B type 2-F	no	no	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	11.441	3.2492	3	0.020795	4026	160513_QHF_FH_JSI12Kac_6	50.898	40.987			0.28729	0.29246	153.28	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10382	0.098938	NaN	1	1	Median	0.79494	0.86448	NaN	1	1	Median	62772000	53014000	9758100	0	0	0	0	0	0	50551000	45666000	4885800	12220000	7348000	4872300	28973	1235;1902;2915	27404	179883;179884	243177;243178	243178	1120		2	
LAIALGDAVNHPTPMAAAANEVYK	1	Unmodified	2436.2471	0.24712992	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	80.674	80.124	3	1.1149E-28	69388	160511_QHF_FH_JSI12i_3	163.95	151.27			1.0052	0.99102	10.179	5	1	Median	1.0052	0.85532	NaN	1	1	Median	0.70558	0.87315	NaN	1	0	Median	1.0473	0.99102	NaN	1	0	Median	0.99235	1.0539	2.6607	2	0	Median	555550000	287920000	267630000	55147000	26312000	28836000	70120000	42161000	27960000	164220000	81483000	82741000	266060000	137970000	128090000	28974	2827	27405	179885;179886;179887;179888;179889	243179;243180;243181;243182;243183;243184;243185	243184			7	
LAIALGDAVNHPTPMAAAANEVYK	1	Oxidation (M)	2452.242	0.24204455	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	69.745	69.447	3	6.597E-06	60123	160511_QHF_FH_JSI12i_3	62.19	54.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12821000	12821000	0	0	0	0	0	0	0	0	0	0	12821000	12821000	0	28975	2827	27405	179890	243186	243186		2153	1	
LAIHNPNLPTTLPVNSQNIQPVR	0	Unmodified	2535.3922	0.39215468	2478	Q13887	KLF5	Krueppel-like factor 5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				76.593	75.154	3	7.4909E-05	61829	160511_QHF_FH_JSI9i_3	53.059	49.465			1.2925	1.0636	NaN	1	0	Median	1.2925	1.0636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17599000	8094200	9505000	17599000	8094200	9505000	0	0	0	0	0	0	0	0	0	28976	2478	27406	179891	243187	243187			1	
LAIIFLPMFTFTAGNALK	1	Unmodified	1967.0954	0.095427295	4685	Q9H300	PARL	Presenilins-associated rhomboid-like protein, mitochondrial;P-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		100.54	93.581	2;3	4.0155E-25	55765	160513_QHF_FH_JSI10Kac_6	118.33	101.26			0.71515	0.84352	21.682	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78635	0.9262	13.224	2	1	Median	0.68788	0.66001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	195240000	114330000	80905000	0	0	0	85789000	48048000	37741000	109450000	66287000	43164000	0	0	0	28977	4685	27407	179892;179893;179894	243188;243189;243190;243191	243190			4	
LAIKPFYQNK	2	Acetyl (K)	1262.7023	0.70230842	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.577							1	4	1	1	2	1	2	73.715	63.3	2	0.0090731	31381	160513_QHF_FH_JSI12Kac_5	60.973	46.306			1.0828	0.99809	19.543	6	0	Median	1.0711	0.89938	NaN	1	0	Median	0.73339	0.87558	2.7566	2	0	Median	1.1209	1.1076	NaN	1	0	Median	1.1848	1.2757	14.994	2	0	Median	66114000	31459000	34655000	4548800	2354100	2194700	10857000	6141600	4715200	5869700	2848500	3021200	44838000	20115000	24723000	28978	4290	27408	179895;179896;179897;179898;179899;179900	243192;243193;243194;243195	243194	3106		4	
LAILAEQYDHSINEMLSTQALR	0	Unmodified	2515.2741	0.27407296	3237	Q7L7X3	TAOK1	Serine/threonine-protein kinase TAO1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.346	98.366	3	7.5589E-05	85242	160511_QHF_FH_JSI12i_3	58.093	46.306			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28979	3237	27409	179901	243196	243196			1	
LAILDQELEHK	1	Unmodified	1307.7085	0.70851601	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.25	56.31	3	2.3787E-05	49719	160511_QHF_FH_JSI10i_2	97.911	74.162			0.66062	0.72393	21.556	4	3	Median	0.66046	0.57368	NaN	1	1	Median	0.58548	0.71972	NaN	1	1	Median	0.97744	0.97087	NaN	1	0	Median	0.66078	0.72816	NaN	1	1	Median	127220000	68159000	59061000	19324000	12313000	7010700	33631000	20563000	13068000	43475000	19323000	24152000	30791000	15961000	14830000	28980	2320	27410	179902;179903;179904;179905	243197;243198;243199;243200;243201	243201			5	
LAILGIHNEVSK	1	Unmodified	1292.7452	0.74523587	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		3	9						9	8	5	4	4	57.398	52.807	2;3	1.025E-16	46518	160511_QHF_FH_JSI11i_3	138.45	132.61			0.89125	0.89838	48.668	20	8	Median	0.77443	0.65927	74.781	7	5	Median	0.62288	0.72389	17.512	5	2	Median	1.2838	1.2466	17.316	4	0	Median	0.89225	0.90973	14.726	4	1	Linear	2015200000	997150000	1018100000	305960000	168760000	137200000	307150000	171090000	136060000	693980000	283820000	410160000	708140000	373480000	334660000	28981	1021	27411	179906;179907;179908;179909;179910;179911;179912;179913;179914;179915;179916;179917;179918;179919;179920;179921;179922;179923;179924;179925;179926	243202;243203;243204;243205;243206;243207;243208;243209;243210;243211;243212;243213;243214;243215;243216;243217;243218;243219;243220;243221;243222;243223;243224;243225;243226;243227;243228;243229;243230;243231;243232;243233;243234	243204			32	
LAILHLINGTIK	1	Unmodified	1304.818	0.81800688	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	81.214	80.988	3	0.00050519	70423	160511_QHF_FH_JSI12i_3	62.14	52.453			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28982	3033	27412	179927;179928	243235;243236	243236			2	
LAILQVGNR	0	Unmodified	982.59236	0.59236404	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.55	52.987	2	3.3722E-05	43468	160511_QHF_FH_JSI9i_3	100.74	69.513			0.96335	0.91821	5.1505	2	0	Median	1.1539	0.95227	NaN	1	0	Median	0.80426	0.88537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75397000	35979000	39419000	45410000	18774000	26636000	29987000	17204000	12783000	0	0	0	0	0	0	28983	1004	27413	179929;179930	243237;243238	243238			2	
LAILYAK	1	Unmodified	790.49528	0.49527576	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.44	3	4	4			2	2	3	4	3	7	7	5	54.991	49.575	2	0.0091535	40372	160511_QHF_FH_JSI9i_3	80.377	42.007			0.97808	1.0494	12.436	22	0	Median	1.1592	0.97617	16.7	3	0	Median	0.91566	1.0878	5.9206	7	0	Median	1.0349	1.0105	16.497	7	0	Median	0.97957	1.0639	10.124	5	0	Median	10730000000	5211600000	5518900000	1849200000	765030000	1084200000	2690000000	1514500000	1175500000	4045300000	1868300000	2176900000	2146000000	1063600000	1082300000	28984	1707	27414	179931;179932;179933;179934;179935;179936;179937;179938;179939;179940;179941;179942;179943;179944;179945;179946;179947;179948;179949;179950;179951;179952	243239;243240;243241;243242;243243;243244;243245;243246;243247;243248;243249;243250;243251;243252;243253;243254;243255;243256;243257;243258;243259;243260;243261;243262;243263;243264;243265;243266;243267;243268;243269;243270;243271	243252			33	
LAILYAKR	1	Acetyl (K)	988.60695	0.60695147	1707	P50502;Q8NFI4;Q8IZP2	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	yes	no	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	66.245	56.492	2	0.0052427	30676	160513_QHF_FH_JSI11Kac_6	109.63	59.09			0.50793	0.51943	56.281	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35647	0.34889	NaN	1	0	Median	0.72374	0.77332	NaN	1	0	Median	62189000	41037000	21153000	0	0	0	0	0	0	41169000	28711000	12458000	21021000	12326000	8695000	28985	1707	27415	179953;179954	243272	243272	1721		1	
LAIMMMKKR	2	2 Oxidation (M)	1152.6181	0.61812656	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	2	2	By MS/MS				3	0			1							1				102.15	101.97	2	0.029525	82878	160511_QHF_FH_JSI9i_3	48.504	14.415			1.1549	0.93589	NaN	1	0	Median	1.1549	0.93589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38683000	23383000	15300000	38683000	23383000	15300000	0	0	0	0	0	0	0	0	0	28986	150	27416	179955	243273	243273			1	
LAINLLAK	1	Unmodified	854.55894	0.55893865	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	66.662	65.844	2	0.0070325	56805	160511_QHF_FH_JSI12i_3	60.76	7.2056			1.2369	1.1688	5.5706	4	0	Median	1.4196	1.1645	NaN	1	0	Median	0.9483	1.103	NaN	1	0	Median	1.3156	1.2631	NaN	1	0	Median	1.163	1.1731	NaN	1	0	Median	194600000	91603000	103000000	20787000	9612300	11175000	32793000	17137000	15656000	54766000	25420000	29346000	86256000	39434000	46822000	28987	4751	27417	179956;179957;179958;179959	243274	243274			1	
LAINYDPLEK	1	Unmodified	1174.6234	0.6233894	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				67.942	66.949	2	0.04783	59477	160511_QHF_FH_JSI9i_1	43.635	23.848			0.95841	0.76061	NaN	1	1	Median	0.95841	0.76061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25563000	12795000	12768000	25563000	12795000	12768000	0	0	0	0	0	0	0	0	0	28988	3306	27418	179960	243275	243275			1	
LAIQLGAQALLGAAK	1	Unmodified	1436.8715	0.87149901	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	91.688	91.645	2;3	6.4262E-21	81603	160511_QHF_FH_JSI11i_3	131.28	115.06			0.96624	1.0833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96624	1.0833	NaN	1	1	Median	73600000	38330000	35270000	0	0	0	0	0	0	0	0	0	73600000	38330000	35270000	28989	4000	27419	179961;179962;179963	243276;243277;243278	243276			3	
LAIQLLK	1	Unmodified	797.53747	0.53747492	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	63.695	63.046	2	0.013061	54309	160511_QHF_FH_JSI12i_3	68.398	0			0.99265	0.98538	3.7947	6	0	Median	1.1037	0.9583	NaN	1	0	Median	0.84594	1.0408	NaN	1	0	Median	0.99265	0.97927	0.17318	2	0	Median	0.96543	1.0219	4.4353	2	0	Median	236640000	120110000	116520000	19342000	9295700	10046000	24867000	12676000	12191000	86685000	45268000	41418000	105740000	52875000	52867000	28990	2925	27420	179964;179965;179966;179967;179968;179969	243279;243280;243281	243281			3	
LAISEDHVASVK	1	Unmodified	1267.6772	0.67721588	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	2	2		35.57	34.859	2;3	6.7794E-05	30565	160511_QHF_FH_JSI10i_2	90.793	74.161			0.7729	0.79047	28.687	4	2	Median	0.74252	0.62685	NaN	1	0	Median	0.80454	0.9968	NaN	1	1	Median	0.80617	0.80238	37.295	2	1	Median	NaN	NaN	NaN	0	0	Median	269320000	126080000	143250000	53109000	24570000	28539000	79839000	35818000	44021000	136380000	65687000	70688000	0	0	0	28991	4848	27421	179970;179971;179972;179973;179974	243282;243283;243284;243285;243286	243285			4	
LAIVLFTK	1	Unmodified	903.57934	0.57933974	3599	Q8NBN7	RDH13	Retinol dehydrogenase 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	80.516	76.022	2	0.0015381	40991	160513_QHF_FH_JSI10Kac_6	98.299	51.873			0.96125	0.94188	14.019	8	0	Median	1.0301	0.8587	13.674	2	0	Median	0.78989	0.92945	6.331	2	0	Median	0.8889	0.84664	14.478	2	0	Median	1.0405	1.0952	10.066	2	0	Median	647850000	336250000	311600000	208430000	97167000	111260000	230440000	123700000	106740000	113670000	68599000	45070000	95310000	46787000	48524000	28992	3599	27422	179975;179976;179977;179978;179979;179980;179981;179982	243287;243288;243289;243290;243291;243292;243293	243293			7	
LAIWDTAGQER	0	Unmodified	1258.6306	0.63060004	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	55.901	55.265	2	0.00019709	48556	160511_QHF_FH_JSI9i_2	81.263	63.399			1.0057	1.0236	4.6903	7	0	Median	1.2493	1.0998	NaN	1	0	Median	0.80177	1	NaN	1	0	Median	0.97185	1.0236	2.5587	3	0	Plateau	0.91725	0.98666	6.0359	2	0	Median	839370000	423020000	416340000	128350000	51179000	77168000	172230000	95184000	77043000	318590000	158960000	159630000	220210000	117700000	102510000	28993	4884	27423	179983;179984;179985;179986;179987;179988;179989	243294;243295;243296;243297;243298;243299;243300;243301;243302;243303;243304;243305	243299			12	
LAIYGMLPK	1	Unmodified	1004.5729	0.57287415	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		78.223	68.905	2	0.007674	37741	160513_QHF_FH_JSI11Kac_6	60.972	29.683			0.82444	0.8052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82444	0.8052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23638000	13912000	9726200	0	0	0	0	0	0	23638000	13912000	9726200	0	0	0	28994	4543	27424	179990	243306	243306			1	
LAKEYHPDK	2	Acetyl (K)	1141.5768	0.57677356	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.6	0.49							2	3			2	3		25.281	16.294	3	0.0076473	9505	160513_QHF_FH_JSI10Kac_5	45.158	20.304			0.77821	0.8199	139.32	4	2	Median	NaN	NaN	NaN	0	0	Median	1.6795	1.9015	44.036	2	1	Median	0.23191	0.22783	106.17	2	1	Median	NaN	NaN	NaN	0	0	Median	17781000	12714000	5067000	0	0	0	4695100	2035600	2659500	13086000	10678000	2407500	0	0	0	28995	456	27425	179991;179992;179993;179994;179995	243307;243308;243309;243310;243311	243311	233		4	
LAKHESQQDYSK	2	Acetyl (K)	1474.7052	0.70522155	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		18.713	11.087	3	0.025057	8107	160513_QHF_FH_JSI11Kac_4	32.068	19.902			0.49422	0.48718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49422	0.48718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6821600	5072800	1748800	0	0	0	0	0	0	6821600	5072800	1748800	0	0	0	28996	2522	27426	179996	243312	243312	2522		1	
LAKLQAQVR	1	Acetyl (K)	1067.6451	0.64512789	1172;4146	Q96K17;P20290	BTF3L4;BTF3	Transcription factor BTF3 homolog 4;Transcription factor BTF3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	44.65	34.518	2	0.057458	19541	160513_QHF_FH_JSI11Kac_5	42.109	9.2684			0.4658	0.45674	46.612	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98011	1.1599	NaN	1	0	Median	0.4658	0.45674	NaN	1	0	Median	0.63502	0.71476	NaN	1	0	Median	16610000	10045000	6565300	0	0	0	4398300	2361200	2037100	7344100	4840100	2504000	4868100	2843900	2024100	28997	4146;1172	27427	179997;179998;179999	243313	243313			1	
LAKYNQLLR	1	Acetyl (K)	1159.6713	0.67134264	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.3	0.7							1	3	3		3	2	2	62.407	52.258	2	0.00053106	27187	160513_QHF_FH_JSI12Kac_6	98.933	45.767			0.38453	0.3636	81.273	7	0	Median	NaN	NaN	NaN	0	0	Median	0.52767	0.64668	15.674	3	0	Median	0.36058	0.34728	6.4951	2	0	Median	0.10591	0.11327	8.8837	2	0	Median	716250000	507120000	209130000	0	0	0	87419000	51852000	35567000	530140000	366510000	163630000	98689000	88750000	9938600	28998	854	27428	180000;180001;180002;180003;180004;180005;180006	243314;243315;243316;243317;243318;243319;243320	243319	526		7	
LALADAGDTVEDANFVEAMADAGILR	0	Unmodified	2647.2799	0.27994619	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	102.17	102.09	3	5.9079E-42	92695	160511_QHF_FH_JSI12i_1	179.5	167.18			1.0925	1.1201	24.376	4	0	Median	1.0933	0.96203	NaN	1	0	Median	1.0918	1.3042	NaN	1	0	Median	1.3133	1.3313	NaN	1	0	Median	0.77469	0.8061	NaN	1	0	Median	774300000	350110000	424190000	128820000	61483000	67333000	264290000	110430000	153870000	231690000	98433000	133250000	149500000	79772000	69733000	28999	5215	27429	180007;180008;180009;180010	243321;243322;243323	243321			3	
LALAGIGQPVK	1	Unmodified	1065.6546	0.65462995	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	58.289	57.381	2	0.00036841	49236	160511_QHF_FH_JSI12i_2	73.26	48.337			0.93474	0.92871	24.81	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0665	1.3022	NaN	1	0	Median	0.93474	0.92871	NaN	1	0	Median	0.73379	0.8029	NaN	1	0	Median	89825000	44073000	45752000	0	0	0	27145000	10578000	16568000	43434000	21104000	22330000	19246000	12392000	6854000	29000	5412	27430	180011;180012;180013	243324;243325;243326	243324			3	
LALAGIGQPVKK	2	Unmodified	1193.7496	0.74959297	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	46.451	45.549	2;3	7.8032E-05	38670	160511_QHF_FH_JSI12i_3	77.358	61.494			0.68715	0.74249	72.381	2	2	Median	NaN	NaN	NaN	0	0	Median	1.063	1.2387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44419	0.44505	NaN	1	1	Median	138250000	87323000	50924000	0	0	0	14802000	8061400	6740300	0	0	0	123450000	79262000	44184000	29001	5412	27431	180014;180015;180016;180017	243327;243328;243329;243330	243330			4	
LALALENEGYIK	1	Unmodified	1332.7289	0.7289171	3059;2912	Q5MIZ7;Q6IN85	SMEK2;SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3B;Serine/threonine-protein phosphatase 4 regulatory subunit 3A	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.68	69.729	2	0.0028729	61069	160511_QHF_FH_JSI11i_2	68.557	50.693			0.74461	0.78038	34.004	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58909	0.6136	NaN	1	1	Median	0.94119	0.9925	NaN	1	1	Median	60523000	36858000	23666000	0	0	0	0	0	0	36792000	23048000	13744000	23731000	13810000	9921400	29002	2912;3059	27432	180018;180019	243331;243332	243332			2	
LALASLGYEK	1	Unmodified	1063.5914	0.59136099	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.31	6.37		4	3					5	1	3	2	5	3	63.133	57.633	2	4.6404E-05	51772	160511_QHF_FH_JSI10i_2	93.649	69.494			1.1884	1.1949	43.703	12	1	Median	1.5879	1.3535	6.2426	2	0	Median	1.0499	1.2823	30.729	2	0	Median	1.1199	1.0685	61.453	5	1	Median	1.0153	1.1138	42.271	3	0	Median	1377200000	518450000	858780000	12979000	5094200	7884500	305770000	103950000	201820000	677350000	240320000	437020000	381130000	169080000	212060000	29003	3766	27433	180020;180021;180022;180023;180024;180025;180026;180027;180028;180029;180030;180031;180032	243333;243334;243335;243336;243337;243338;243339;243340;243341;243342	243341			9	
LALCSADSVAFPVLTHSTR	0	Unmodified	2044.0412	0.041159893	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		81.261	80.382	3	0.00073244	67384	160511_QHF_FH_JSI10i_3	53.773	38.535			0.81749	0.74789	28.302	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0369	1.1531	18.774	2	2	Median	0.81749	0.74789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99681000	51392000	48288000	0	0	0	60584000	32022000	28562000	39097000	19370000	19727000	0	0	0	29004	2591	27434	180033;180034;180035	243343;243344;243345	243344			2	
LALDIEIATYRK	1	Unmodified	1404.7977	0.79766537	51;71;53;83;82;60;81	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__P08729;CON__Q3KNV1;P08729;CON__Q9DCV7;CON__P19013;P19013;CON__Q6KB66-1;Q6KB66;CON__Q6NXH9	KRT8;KRT7;KRT4;KRT80	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 80	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	70.756	70.047	2;3	6.178E-08	60703	160511_QHF_FH_JSI12i_3	130.44	104.42		+	0.90003	0.86017	21.083	10	0	Median	0.98059	0.82261	4.1326	2	0	Median	0.67731	0.80143	12.185	2	0	Median	1.3198	1.2436	16.651	3	0	Median	0.77075	0.79543	10.815	3	0	Median	1191100000	632040000	559080000	131690000	69549000	62143000	214690000	134400000	80298000	289240000	130880000	158360000	555480000	297210000	258270000	29005	51;53;71;83;60;81;82	27435	180036;180037;180038;180039;180040;180041;180042;180043;180044;180045	243346;243347;243348;243349;243350;243351;243352;243353;243354;243355;243356;243357;243358;243359;243360;243361;243362;243363;243364;243365;243366	243364			21	
LALDLEIATYR	0	Unmodified	1276.7027	0.70270235	810	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	0			By MS/MS		2	0		1										1		83.077	82.465	2	0.012981	72615	160511_QHF_FH_JSI11i_2	67.207	0		+	0.83386	0.84352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83386	0.84352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61657000	31928000	29729000	0	0	0	0	0	0	61657000	31928000	29729000	0	0	0	29006	810	27436	180046	243367	243367			1	
LALDMEIHAYR	0	Unmodified	1330.6704	0.67035637	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	63.693	61.063	3	7.8896E-06	52623	160511_QHF_FH_JSI12i_2	86.313	82.868			1.1903	1.047	44.423	5	1	Median	1.2134	1.047	NaN	1	0	Median	0.75734	0.89874	NaN	1	0	Median	1.7936	1.8069	56.623	2	1	Median	0.89463	0.98463	NaN	1	0	Median	194490000	96596000	97895000	28585000	12328000	16256000	50369000	31970000	18399000	69753000	23453000	46300000	45784000	28844000	16940000	29007	791	27437	180047;180048;180049;180050;180051	243368;243369;243370;243371;243372;243373;243374;243375	243368			8	
LALDMEIHAYR	0	Oxidation (M)	1346.6653	0.66527099	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	1	2	1	2	58.323	48.555	3	8.5615E-05	25254	160513_QHF_FH_JSI12Kac_6	87.363	78.634			0.9585	1.0056	8.9317	6	0	Median	1.1776	1.0144	NaN	1	0	Median	0.76674	0.91093	1.5718	2	0	Median	1.164	1.1136	NaN	1	0	Median	0.9585	1.0513	7.5234	2	0	Median	122060000	61300000	60759000	38857000	19470000	19388000	33272000	17906000	15366000	18477000	8385200	10092000	31453000	15539000	15914000	29008	791	27437	180052;180053;180054;180055;180056;180057	243376;243377;243378;243379	243379		302	4	
LALDMEIHAYRK	1	Unmodified	1458.7653	0.76531938	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			12						8	6	6	4	4	56.49	51.979	3;4	1.0993E-08	28421	160513_QHF_FH_JSI10Kac_6	107.18	94.195			1.0153	0.86475	20.028	19	1	Median	1.0805	0.87139	10.095	6	1	Median	0.69659	0.83133	11.434	5	0	Median	1.3087	1.2364	14.256	4	0	Median	0.86157	0.88696	11.895	4	0	Median	1875300000	923800000	951520000	371690000	156210000	215490000	545630000	306540000	239090000	462090000	185360000	276730000	495910000	275690000	220220000	29009	791	27438	180058;180059;180060;180061;180062;180063;180064;180065;180066;180067;180068;180069;180070;180071;180072;180073;180074;180075;180076;180077	243380;243381;243382;243383;243384;243385;243386;243387;243388;243389;243390;243391;243392;243393;243394;243395;243396;243397;243398;243399;243400;243401;243402;243403;243404;243405;243406;243407;243408;243409;243410;243411;243412;243413;243414;243415;243416;243417;243418	243417			37	
LALDMEIHAYRK	1	Oxidation (M)	1474.7602	0.76023401	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.92			5						12	5	6	3	3	51.347	44.333	3;4	2.1769E-05	21399	160513_QHF_FH_JSI12Kac_6	89.403	81.679			1.0304	0.98353	29.684	17	2	Median	1.0304	0.86227	4.8079	5	1	Median	0.8908	1.0518	46.548	6	1	Median	1.2384	1.2184	15.2	3	0	Median	0.91635	0.97939	10.623	3	0	Plateau	940370000	453460000	486920000	312420000	145650000	166770000	327630000	160240000	167390000	79631000	33936000	45695000	220690000	113630000	107060000	29010	791	27438	180078;180079;180080;180081;180082;180083;180084;180085;180086;180087;180088;180089;180090;180091;180092;180093;180094	243419;243420;243421;243422;243423;243424;243425;243426;243427;243428;243429;243430;243431;243432;243433;243434;243435;243436;243437	243432		302	19	
LALDMEINAYRK	1	Unmodified	1435.7493	0.74933497	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	61.616	61.475	3	0.010808	54716	160511_QHF_FH_JSI11i_3	54.343	38.803			1.3582	1.2977	17.45	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2659	1.1471	NaN	1	0	Median	1.4572	1.4681	NaN	1	1	Median	135770000	59630000	76142000	0	0	0	0	0	0	52812000	25317000	27496000	82960000	34313000	48647000	29011	2207	27439	180095;180096	243438;243439	243438			1	
LALDMEISAYRK	1	Unmodified	1408.7384	0.73843593	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	62.49	62.303	2;3	5.4202E-06	53752	160511_QHF_FH_JSI12i_3	98.407	83.02			1.0757	1.096	17.76	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3769	1.3266	NaN	1	0	Median	0.98932	1.0098	11.586	2	0	Median	500590000	245650000	254940000	0	0	0	0	0	0	175810000	78410000	97397000	324780000	167240000	157540000	29012	1180	27440	180097;180098;180099;180100;180101	243440;243441;243442;243443;243444;243445;243446;243447;243448	243445			9	
LALDVEIATYRK	1	Unmodified	1390.782	0.78201531	79;57;45;54;78;63;52	CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__P35908v2;CON__P35908;P35908	KRT75;KRT3;KRT76;KRT5;KRT79;KRT2	Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1				By MS/MS	2	0		1											1	71.091	69.798	3	0.062424	60244	160511_QHF_FH_JSI12i_2	20.84	12.708		+	0.88183	1.0014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88183	1.0014	NaN	1	1	Median	10446000	8297700	2148500	0	0	0	0	0	0	0	0	0	10446000	8297700	2148500	29013	45;52;54;57;78;79;63	27441	180102	243449	243449			1	
LALDYGIK	1	Unmodified	891.50657	0.50656873	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	55.084	54.193	2	0.00063796	46562	160511_QHF_FH_JSI12i_2	101.64	0			0.94154	1.0098	7.1174	9	0	Median	1.18	1.0284	6.884	3	0	Median	0.81885	0.96999	9.7348	2	0	Median	0.99655	0.99045	10.312	2	0	Median	0.89105	0.96704	6.1183	2	0	Median	1048400000	525450000	522980000	179920000	86859000	93057000	246110000	139930000	106180000	360240000	165450000	194790000	262160000	133210000	128950000	29014	1927	27442	180103;180104;180105;180106;180107;180108;180109;180110;180111	243450;243451;243452;243453;243454;243455;243456;243457;243458;243459;243460;243461;243462;243463;243464	243453			15	
LALEAEVSELR	0	Unmodified	1228.6663	0.66631685	3263	Q7Z406	MYH14	Myosin-14	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				47.743	38.531	3	0.039745	20566	160513_QHF_FH_JSI9Kac_6	16.942	0			0.82971	0.72333	NaN	1	0	Median	0.82971	0.72333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9492900	5881200	3611700	9492900	5881200	3611700	0	0	0	0	0	0	0	0	0	29015	3263	27443	180112	243465	243465			1	
LALELPDVTK	1	Unmodified	1097.6332	0.6332258	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.4	0.49	3	2								2	2		1	77.332	76.592	2	0.0024077	67907	160511_QHF_FH_JSI9i_1	63.216	47.956			0.6323	0.66117	30.888	2	2	Median	0.60111	0.53145	NaN	1	1	Median	0.6651	0.82256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54715000	32712000	22004000	30839000	19295000	11544000	23876000	13417000	10460000	0	0	0	0	0	0	29016	4262	27444	180113;180114;180115;180116;180117	243466;243467;243468;243469;243470	243468			5	
LALEQQQLICK	1	Unmodified	1342.7279	0.72787125	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	55.831	54.463	2	0.01089	46717	160511_QHF_FH_JSI12i_2	56.563	44.715			1.0287	1.1519	47.356	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0287	1.1519	47.356	2	2	Median	26732000	12302000	14430000	0	0	0	0	0	0	0	0	0	26732000	12302000	14430000	29017	3432	27445	180118;180119	243471;243472	243472			2	
LALETTVLVESYTLPDGR	0	Unmodified	1976.0466	0.046622427	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	97.104	96.768	3	7.9724E-05	84944	160511_QHF_FH_JSI11i_2	63.691	59.589			0.63439	0.63327	4.8881	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64708	0.61176	NaN	1	0	Median	0.62195	0.65555	NaN	1	1	Median	32356000	17686000	14671000	0	0	0	0	0	0	15893000	8433800	7458900	16463000	9251700	7211700	29018	1940	27446	180120;180121	243473;243474	243474			2	
LALFAHREDGPGIPADIK	1	Unmodified	1919.0265	0.026496107	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		65.395	64.899	3;4	0.0020685	57170	160511_QHF_FH_JSI11i_3	46.543	28.405			0.76898	0.79196	25.513	3	1	Plateau	0.76898	0.63426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8422	0.79196	31.195	2	0	Median	NaN	NaN	NaN	0	0	Median	240990000	117240000	123750000	27906000	14375000	13530000	0	0	0	213080000	102860000	110220000	0	0	0	29019	4212	27447	180122;180123;180124	243475;243476;243477	243476			3	
LALFNPDVCWDR	0	Unmodified	1504.7133	0.71328381	143	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	88.032	87.599	2	0.00011366	77953	160511_QHF_FH_JSI11i_3	87.328	81.088			1.0626	1.2048	30.119	6	2	Median	1.4342	1.2353	NaN	1	1	Median	0.99774	1.2118	NaN	1	1	Median	0.83605	0.80168	8.6786	2	0	Median	1.404	1.4502	27.051	2	0	Median	237850000	120460000	117380000	11538000	4767800	6770000	26767000	14263000	12504000	119760000	66321000	53440000	79781000	35112000	44669000	29020	143	27448	180125;180126;180127;180128;180129;180130;180131	243478;243479;243480;243481;243482;243483;243484	243478			7	
LALFPLLPK	1	Unmodified	1010.6528	0.65283903	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	100.44	100.34	2	0.00012089	86658	160511_QHF_FH_JSI12i_3	91.906	87.55			1.0603	0.99412	14.85	7	0	Median	1.2215	1.0313	9.5466	2	0	Median	0.82419	1.0182	NaN	1	0	Median	0.89839	0.86833	19.133	2	0	Median	0.98844	1.0438	20.686	2	0	Median	398910000	203440000	195470000	96878000	42681000	54197000	24694000	14566000	10128000	135710000	72930000	62775000	141630000	73268000	68366000	29021	752	27449	180132;180133;180134;180135;180136;180137;180138	243485;243486;243487;243488	243487			4	
LALFQAIGK	1	Unmodified	959.5804	0.58040237	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.102	72.301	2	0.00013075	60768	160511_QHF_FH_JSI10i_3	91.041	52.223			0.9542	0.95881	15.434	4	0	Median	1.2283	0.97824	NaN	1	0	Median	0.97854	1.1345	NaN	1	0	Median	0.85266	0.7798	NaN	1	0	Median	0.93046	0.93976	NaN	1	0	Median	234420000	108550000	125860000	52665000	18704000	33961000	42583000	21010000	21572000	53171000	25588000	27583000	86001000	43253000	42748000	29022	1898	27450	180139;180140;180141;180142	243489;243490;243491;243492;243493;243494;243495	243492			7	
LALFYDWLFFSPDK	1	Unmodified	1760.8814	0.881395	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.202	91.103	2	1.3981E-16	49454	160513_QHF_FH_JSI12Kac_6	140.39	111.13			0.77661	0.7615	40.439	3	0	Median	0.89189	0.7615	NaN	1	0	Median	0.77661	0.89334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.38785	0.41509	NaN	1	0	Median	271110000	168630000	102480000	102190000	58839000	43355000	82566000	49074000	33492000	0	0	0	86348000	60718000	25630000	29023	3028	27451	180143;180144;180145	243496;243497;243498	243497			1	
LALGDDSPALK	1	Unmodified	1098.5921	0.59208927	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	49.841	49.106	2	8.2195E-06	43612	160511_QHF_FH_JSI9i_1	109.29	92.75			0.80637	0.79257	12.257	5	0	Median	0.84834	0.6998	NaN	1	0	Median	0.68324	0.82755	19.919	2	0	Median	0.81404	0.79257	NaN	1	0	Median	0.77522	0.82038	NaN	1	0	Median	2498000000	1315800000	1182200000	572400000	274330000	298070000	577180000	323860000	253330000	723370000	367270000	356100000	625050000	350360000	274690000	29024	1111	27452	180146;180147;180148;180149;180150	243499;243500;243501;243502;243503;243504;243505;243506;243507	243505			9	
LALGIPLPELR	0	Unmodified	1190.7387	0.73869393	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	100.22	100.14	2	0.00010648	86251	160511_QHF_FH_JSI12i_2	86.136	61.981			1.1321	1.0652	14.638	6	0	Median	1.1269	0.98386	NaN	1	0	Median	0.72821	0.89607	NaN	1	0	Median	1.2104	1.1871	5.5179	2	0	Median	1.1009	1.1388	19.26	2	0	Median	329450000	163310000	166140000	42129000	19571000	22558000	61831000	35522000	26308000	116340000	54442000	61899000	109150000	53775000	55377000	29025	1296	27453	180151;180152;180153;180154;180155;180156	243508;243509;243510	243509			3	
LALGNGLR	0	Unmodified	812.48684	0.48683634	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	38.054	37.197	2	0.0014076	30345	160511_QHF_FH_JSI9i_3	89.903	0			1.0112	0.93165	8.4108	6	0	Median	1.1216	0.92535	2.6452	2	0	Median	0.83159	0.95965	13.776	2	0	Median	0.96889	0.92062	NaN	1	0	Median	1.0661	1.0674	NaN	1	0	Median	622080000	317310000	304770000	203790000	86094000	117690000	187760000	106920000	80838000	107680000	54936000	52740000	122850000	69357000	53496000	29026	228	27454	180157;180158;180159;180160;180161;180162	243511;243512;243513;243514;243515	243513			5	
LALGQINIAK	1	Unmodified	1039.639	0.63897988	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	3.93	2	4	3					1		2	3	3	2	65.799	64.129	2	1.0179E-05	56971	160511_QHF_FH_JSI10i_2	104.75	80.953			0.812	0.81668	20.962	10	3	Median	1.097	0.93401	19.352	2	1	Median	0.79331	0.96799	27.134	3	1	Median	0.80797	0.77268	14.004	3	1	Median	0.71654	0.76429	16.663	2	0	Median	1200400000	651040000	549360000	170280000	88584000	81692000	144010000	80399000	63615000	431390000	249900000	181480000	454720000	232150000	222570000	29027	4559	27455	180163;180164;180165;180166;180167;180168;180169;180170;180171;180172	243516;243517;243518;243519;243520;243521;243522;243523;243524;243525;243526;243527;243528;243529;243530;243531;243532	243528			17	
LALGSFVEEYNNK	1	Unmodified	1482.7355	0.73545904	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	74.366	73.746	2	1.4795E-22	63945	160511_QHF_FH_JSI12i_3	180.36	152.59			0.8919	0.89607	10.773	4	1	Median	NaN	NaN	NaN	0	0	Median	0.74919	0.90516	17.76	2	0	Median	0.92707	0.86107	NaN	1	1	Median	0.95111	0.93248	NaN	1	0	Median	262820000	144750000	118070000	0	0	0	35170000	21652000	13518000	98848000	48719000	50129000	128800000	74379000	54423000	29028	1970	27456	180173;180174;180175;180176	243533;243534;243535;243536	243535			3	
LALGVGR	0	Unmodified	684.42826	0.42825883	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				33.091	31.673	2	0.045762	25927	160511_QHF_FH_JSI9i_3	44.531	21.494			1.3419	1.0726	NaN	1	0	Median	1.3419	1.0726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149760000	66191000	83571000	149760000	66191000	83571000	0	0	0	0	0	0	0	0	0	29029	4608	27457	180177	243537	243537			1	
LALHNFG	0	Unmodified	770.40752	0.40752338	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.44	2	4	3						4	3	4	4	2	42.829	39.383	2	0.0042964	21517	160513_QHF_FH_JSI11Kac_6	97.926	94.534			1.0802	1.0885	7.5954	13	1	Median	1.1835	1.0166	9.2227	3	0	Median	0.94281	1.0783	4.2951	4	0	Median	1.0605	1.1367	4.4509	4	1	Linear	1.0336	1.1203	12.162	2	0	Median	3422200000	1651000000	1771200000	681660000	291060000	390600000	819140000	453540000	365590000	1346600000	637060000	709550000	574800000	269340000	305460000	29030	1974	27458	180178;180179;180180;180181;180182;180183;180184;180185;180186;180187;180188;180189;180190	243538;243539;243540;243541;243542;243543;243544;243545;243546;243547;243548;243549;243550;243551;243552;243553;243554;243555;243556;243557;243558	243545			21	
LALHSGMDYAIMTGGDVAPMGR	0	Unmodified	2262.0595	0.059528849	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.985	77.852	3	7.7914E-07	67473	160511_QHF_FH_JSI12i_3	73.21	65.385			1.1672	1.1331	1.6224	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2149	1.1202	NaN	1	0	Median	1.1214	1.1462	NaN	1	0	Median	284430000	126460000	157970000	0	0	0	0	0	0	136440000	65117000	71319000	147990000	61342000	86650000	29031	2957;5035	27459	180191;180192	243559;243560;243561	243560			3	
LALHSGMDYAIMTGGDVAPMGR	0	Oxidation (M)	2278.0544	0.054443471	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	1	0				By MS/MS	3	0			1										1	70.384	70.085	3	0.00010942	60789	160511_QHF_FH_JSI12i_3	55.588	51.58			1.7856	1.8526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7856	1.8526	NaN	1	1	Median	114820000	31848000	82975000	0	0	0	0	0	0	0	0	0	114820000	31848000	82975000	29032	2957;5035	27459	180193	243562	243562		2172	1	
LALIAPK	1	Unmodified	724.48471	0.48471107	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				45.589	44.535	2	0.047323	38947	160511_QHF_FH_JSI9i_2	48.174	16.06			0.83793	0.70881	NaN	1	1	Median	0.83793	0.70881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52579000	26530000	26049000	52579000	26530000	26049000	0	0	0	0	0	0	0	0	0	29033	327	27460	180194	243563	243563			1	
LALIAPKK	2	Unmodified	852.57967	0.57967409	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	31.978	31.249	3	0.011496	25536	160511_QHF_FH_JSI9i_3	41.029	31.815			0.65563	0.71012	12.076	2	2	Median	NaN	NaN	NaN	0	0	Median	0.55795	0.652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7704	0.77342	NaN	1	1	Median	82408000	44494000	37915000	0	0	0	27697000	15266000	12431000	0	0	0	54712000	29228000	25484000	29034	327	27461	180195;180196;180197	243564;243565;243566;243567	243565			4	
LALIGGLEGFLSK	1	Unmodified	1316.7704	0.77038799	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.68	101.69	2	0.038669	88399	160511_QHF_FH_JSI12i_3	38.96	21.934			1.1273	1.1473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1273	1.1473	NaN	1	0	Median	101020000	55088000	45932000	0	0	0	0	0	0	0	0	0	101020000	55088000	45932000	29035	477	27462	180198	243568	243568			1	
LALIQLQISSIK	1	Unmodified	1325.8282	0.82823722	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	4	3	3	1	91.271	89.303	2	2.8745E-15	42812	160513_QHF_FH_JSI9Kac_6	140.07	115.22			0.76118	0.72791	21.272	5	5	Median	0.7289	0.63854	6.7155	2	2	Median	0.56891	0.72791	NaN	1	1	Median	0.77893	0.76264	NaN	1	1	Median	1.0709	1.066	NaN	1	1	Median	555140000	326160000	228980000	313650000	198210000	115430000	13328000	7352100	5975700	13448000	7267500	6180200	214720000	113330000	101390000	29036	4924	27463	180199;180200;180201;180202;180203;180204;180205;180206;180207;180208;180209	243569;243570;243571;243572;243573;243574;243575;243576;243577;243578;243579	243577			11	
LALKWHPDK	2	Acetyl (K)	1148.6342	0.63422886	2883;491	Q5F1R6;O75190;Q8WWF6	DNAJC21;DNAJB6;DNAJB3	DnaJ homolog subfamily C member 21;DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3	no	no	1	0	0	1			By MS/MS		16	0									1			1		60.399	50.685	3	0.018186	27546	160513_QHF_FH_JSI11Kac_6	46.844	24.158			2.1687	2.0656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1687	2.0656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27773000	17510000	10264000	0	0	0	0	0	0	27773000	17510000	10264000	0	0	0	29037	2883;491	27464	180210	243580	243580	250		1	
LALKYHPDK	2	Acetyl (K)	1125.6182	0.61824444	1376;4706;3794	P31689;Q9H3Z4;Q8WW22	DNAJA1;DNAJC5;DNAJA4	DnaJ homolog subfamily A member 1;DnaJ homolog subfamily C member 5;DnaJ homolog subfamily A member 4	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	1	2	3	1	45.344	35.747	2;3	0.00074693	19456	160513_QHF_FH_JSI11Kac_6	76.143	49.47			0.53922	0.58292	72.531	7	0	Median	1.1086	0.93099	NaN	1	0	Median	1.1062	1.3183	11.858	2	0	Median	0.31812	0.3053	13.355	3	0	Plateau	0.53922	0.58292	NaN	1	0	Median	175040000	116930000	58111000	14818000	7314800	7503400	35149000	17253000	17896000	100530000	76155000	24379000	24541000	16208000	8333200	29038	1376;4706;3794	27465	180211;180212;180213;180214;180215;180216;180217	243581;243582;243583;243584;243585;243586;243587;243588;243589;243590	243582	1317		9	
LALLALK	1	Unmodified	740.51601	0.5160112	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.233	66.416	2	0.011089	58916	160511_QHF_FH_JSI11i_3	72.021	15.511			1.1876	1.2452	7.6003	4	0	Median	1.5411	1.2644	NaN	1	0	Median	1.0665	1.2262	NaN	1	0	Median	1.3225	1.2648	NaN	1	0	Median	1.0476	1.0782	NaN	1	0	Median	209200000	92357000	116850000	31444000	13380000	18064000	46206000	27542000	18664000	61543000	23005000	38538000	70011000	28430000	41581000	29039	3117	27466	180218;180219;180220;180221	243591;243592;243593	243591			3	
LALLEEAR	0	Unmodified	913.52328	0.52328142	2975	Q5TZA2	CROCC	Rootletin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	4.75	3	3						1		1	2	3	1	47.44	45.322	2	0.0028104	38981	160511_QHF_FH_JSI11i_2	77.282	0			0.87513	0.93329	18.194	7	1	Median	1.4461	1.1924	NaN	1	0	Median	0.78985	0.95688	31.256	2	0	Median	0.85594	0.85125	14.445	3	1	Median	0.87513	0.93329	NaN	1	0	Median	1950400000	951400000	999000000	418780000	191510000	227270000	609920000	292870000	317050000	877040000	445890000	431150000	44657000	21134000	23523000	29040	2975	27467	180222;180223;180224;180225;180226;180227;180228	243594;243595;243596;243597;243598;243599;243600;243601	243598			8	
LALLGLAQPSEK	1	Unmodified	1238.7234	0.72343779	5638	Q9Y4U1	MMACHC	Methylmalonic aciduria and homocystinuria type C protein	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	71.82	71.672	2	0.0091159	63958	160511_QHF_FH_JSI11i_3	70.412	50.625			1.3992	1.4023	2.6166	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.524	1.4285	NaN	1	0	Median	1.2847	1.3766	NaN	1	0	Median	37170000	16182000	20988000	0	0	0	0	0	0	16789000	5689900	11099000	20381000	10492000	9889200	29041	5638	27468	180229;180230	243602	243602			0	
LALLHEGTGPR	0	Unmodified	1162.6459	0.64585618	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	3	3	1	34.225	33.357	2;3	2.5289E-05	27271	160511_QHF_FH_JSI9i_3	86.014	78.447			0.93834	1.0745	30.27	9	2	Median	1.5473	1.2501	34.103	3	0	Median	0.82925	0.97086	18.226	3	0	Median	1.3203	1.2384	10.058	2	1	Median	0.57524	0.58613	NaN	1	1	Median	1426900000	705890000	721050000	319470000	135940000	183530000	410350000	226580000	183770000	456010000	208100000	247920000	241100000	135270000	105830000	29042	5479	27469	180231;180232;180233;180234;180235;180236;180237;180238;180239;180240	243603;243604;243605;243606;243607;243608;243609;243610;243611;243612;243613;243614;243615;243616	243609			14	
LALLLSQFVGSQSVR	0	Unmodified	1616.925	0.92499115	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			88.746	83.025	2;3	0.00014226	47040	160513_QHF_FH_JSI10Kac_6	144.47	107.95			1.018	1.2134	33.11	2	2	Median	NaN	NaN	NaN	0	0	Median	1.018	1.2134	33.11	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	461740000	250360000	211380000	0	0	0	461740000	250360000	211380000	0	0	0	0	0	0	29043	1790	27470	180241;180242	243617;243618;243619	243619			3	
LALLNVATQGVHLWDLQDR	0	Unmodified	2161.1644	0.16438657	4766	Q9H7D7	WDR26	WD repeat-containing protein 26	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		92.541	83.426	3	1.9316E-09	46878	160513_QHF_FH_JSI9Kac_6	106.73	64.087			0.94821	0.87229	56.206	2	0	Median	1.517	1.298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59269	0.58622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78169000	35027000	43142000	39882000	13128000	26754000	0	0	0	38287000	21899000	16388000	0	0	0	29044	4766	27471	180243;180244	243620	243620			1	
LALLQEERDK	1	Unmodified	1213.6667	0.6666512	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		34.085	34.085	3	3.5304E-05	29718	160511_QHF_FH_JSI11i_3	72.321	42.553			1.2032	1.1335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2032	1.1335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57870000	29876000	27995000	0	0	0	0	0	0	57870000	29876000	27995000	0	0	0	29045	2574	27472	180245	243621;243622	243621			2	
LALLQEQWAGGK	1	Unmodified	1312.7139	0.71393574	4867	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.004	68.706	2	0.00032739	59339	160511_QHF_FH_JSI12i_3	90.263	58.841			0.71178	0.73887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71178	0.73887	NaN	1	1	Median	40019000	23152000	16867000	0	0	0	0	0	0	0	0	0	40019000	23152000	16867000	29046	4867	27473	180246	243623	243623			1	
LALLSVTTGGTAEMYTK	1	Unmodified	1754.9124	0.91243713	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.497	80.611	2	2.3491E-06	69682	160511_QHF_FH_JSI12i_2	119.39	102.02			0.96567	0.9877	1.4653	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0065	0.99798	NaN	1	0	Median	0.92645	0.97752	NaN	1	0	Median	66351000	34663000	31688000	0	0	0	0	0	0	42597000	22698000	19899000	23755000	11965000	11790000	29047	1090	27474	180247;180248	243624	243624			1	
LALNQISQISMK	1	Unmodified	1344.7435	0.74352131	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							3	2	2	2	73.055	72.369	2	1.0744E-05	62922	160511_QHF_FH_JSI12i_3	125.74	96.575			0.68099	0.70365	25.644	8	8	Median	0.74123	0.62132	25.046	2	2	Median	0.56985	0.66426	15.754	2	2	Median	0.63704	0.62191	10.015	2	2	Median	0.97554	1.0304	8.0896	2	2	Median	916750000	527680000	389080000	101330000	61666000	39667000	123210000	82891000	40323000	292280000	174620000	117660000	399920000	208500000	191420000	29048	4036	27475	180249;180250;180251;180252;180253;180254;180255;180256;180257	243625;243626;243627;243628;243629;243630;243631;243632;243633;243634;243635	243635			11	
LALNQISQISMK	1	Oxidation (M)	1360.7384	0.73843593	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	62.395	62.115	2	0.003682	55245	160511_QHF_FH_JSI11i_3	64.439	42.353			0.9631	0.98314	11.742	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9631	0.98314	11.742	2	2	Median	75297000	43680000	31617000	0	0	0	0	0	0	0	0	0	75297000	43680000	31617000	29049	4036	27475	180258;180259;180260	243636;243637;243638	243636		2379	3	
LALNVMADNFVFDGSSLPADVHR	0	Oxidation (M)	2503.2166	0.21655808	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	92.782	92.771	3	1.0343E-11	80428	160511_QHF_FH_JSI12i_3	110.4	102.82			1.3158	1.2952	16.227	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5325	1.4527	NaN	1	0	Median	1.1297	1.1548	NaN	1	0	Median	92518000	42466000	50052000	0	0	0	0	0	0	24379000	8597600	15781000	68140000	33869000	34271000	29050	4153	27476	180261;180262	243639;243640;243641	243641		2401	2	
LALNVMADNFVFDGSSLPADVHR	0	Unmodified	2487.2216	0.22164345	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	3	2	101.06	101	3;4	2.5556E-24	88760	160511_QHF_FH_JSI9i_2	162.65	154.66			1.0934	1.0825	25.833	8	2	Median	1.6393	1.4328	37.42	2	0	Median	0.85248	1.0739	NaN	1	1	Median	1.0956	1.0683	28.257	3	1	Median	1.0013	1.0136	10.42	2	0	Median	2462900000	1181600000	1281300000	302430000	123610000	178820000	307390000	203370000	104020000	806900000	342680000	464220000	1046100000	511910000	534230000	29051	4153	27476	180263;180264;180265;180266;180267;180268;180269;180270	243642;243643;243644;243645;243646	243642			5	
LALPADIR	0	Unmodified	867.5178	0.51780212	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0			By MS/MS		8	7	1							1				2		59.819	54.153	2	0.011409	48977	160511_QHF_FH_JSI11i_1	54.205	20.655			0.92052	0.89109	4.7422	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92052	0.89109	4.7422	2	0	Median	NaN	NaN	NaN	0	0	Median	31822000	17245000	14578000	0	0	0	0	0	0	31822000	17245000	14578000	0	0	0	29052	2592	27477	180271;180272	243647;243648;243649	243647			3	
LALPGHAESYNPPPEYLLSEEER	0	Unmodified	2610.2602	0.26019703	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	76.615	76.135	3	1.286E-26	67960	160511_QHF_FH_JSI11i_3	187.57	180.13			0.95189	0.95815	62.454	5	3	Median	1.3041	1.084	NaN	1	1	Median	1.3484	1.6319	NaN	1	0	Median	0.55855	0.54066	80.923	2	1	Median	0.73668	0.75264	NaN	1	1	Median	265110000	160380000	104730000	35223000	13277000	21946000	65330000	24270000	41060000	95895000	77796000	18099000	68666000	45040000	23625000	29053	2496	27478	180273;180274;180275;180276;180277;180278	243650;243651;243652;243653;243654;243655;243656;243657	243650			8	
LALQALTEK	1	Unmodified	985.5808	0.5807963	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.97	4	4	2					2		2	3	4	3	56.031	53.67	2	1.9488E-07	47371	160511_QHF_FH_JSI10i_2	140.5	94.783			1.0541	1.1199	19.596	12	0	Median	1.3189	1.1151	38.12	2	0	Median	0.78691	0.96676	16.087	3	0	Median	1.1207	1.1339	17.235	4	0	Median	1.1964	1.2299	14.11	3	0	Median	3636500000	1779000000	1857500000	415100000	154170000	260930000	679730000	375510000	304220000	1461000000	734090000	726930000	1080600000	515210000	565400000	29054	2252	27479	180279;180280;180281;180282;180283;180284;180285;180286;180287;180288;180289;180290	243658;243659;243660;243661;243662;243663;243664;243665;243666;243667;243668;243669;243670;243671;243672;243673;243674;243675	243674			18	
LALQEFSELNER	0	Unmodified	1447.7307	0.73070802	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	71.071	70.175	2	0.0096753	62330	160511_QHF_FH_JSI10i_2	69.721	51.384			0.75674	0.78079	7.069	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69198	0.83591	NaN	1	0	Median	0.75674	0.7778	NaN	1	0	Median	0.80045	0.89591	NaN	1	0	Median	130680000	76358000	54321000	0	0	0	43116000	25458000	17658000	58402000	34317000	24085000	29162000	16583000	12579000	29055	5677	27480	180291;180292;180293	243676	243676			0	
LALQKNVICDK	2	Acetyl (K)	1342.7279	0.72787125	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		66.968	55.925	2	0.0062185	31122	160513_QHF_FH_JSI11Kac_4	62.303	24.827			0.28032	0.27365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28032	0.27365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5589600	4511700	1077900	0	0	0	0	0	0	5589600	4511700	1077900	0	0	0	29056	1376	27481	180294	243677	243677	1318		1	
LALQLHPDRNPDDPQAQEK	1	Unmodified	2184.0923	0.092343841	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4	4.02		3	6						1	4	3	3		42.393	40.499	3;4	6.1245E-10	35217	160511_QHF_FH_JSI11i_3	124.26	109.95			0.87731	0.82954	8.5017	10	1	Median	1.1091	0.90909	6.9516	4	0	Median	0.71312	0.817	2.9499	3	0	Median	0.8149	0.79053	11.429	3	1	Median	NaN	NaN	NaN	0	0	Median	2462400000	1242300000	1220000000	1007100000	438540000	568550000	803780000	452690000	351090000	651490000	351110000	300380000	0	0	0	29057	5251	27482	180295;180296;180297;180298;180299;180300;180301;180302;180303;180304	243678;243679;243680;243681;243682;243683;243684;243685;243686;243687;243688;243689;243690;243691;243692;243693;243694;243695;243696;243697;243698;243699;243700;243701	243679			24	
LALQWHPDNFQNEEEK	1	Unmodified	1996.9279	0.92790427	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	62.249	61.721	2;3	5.4276E-11	54747	160511_QHF_FH_JSI11i_3	142.91	132.85			0.96807	0.95582	12.591	5	0	Median	NaN	NaN	NaN	0	0	Median	0.81107	0.97137	22.478	2	0	Median	1.0355	0.9646	1.2929	2	0	Median	0.84315	0.8535	NaN	1	0	Median	722670000	400740000	321930000	0	0	0	200600000	129730000	70874000	356400000	166730000	189670000	165670000	104280000	61390000	29058	2373	27483	180305;180306;180307;180308;180309	243702;243703;243704;243705;243706;243707;243708;243709;243710;243711	243702			10	
LALSPLSLGK	1	Unmodified	997.61718	0.61718181	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	71.699	71.394	2	0.00097282	61910	160511_QHF_FH_JSI12i_3	80.787	55.893			0.89776	0.89643	16	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92856	0.87859	22.568	2	2	Median	0.89776	0.89643	NaN	1	1	Median	68799000	33231000	35567000	0	0	0	0	0	0	38971000	18037000	20934000	29828000	15194000	14634000	29059	1660	27484	180310;180311;180312	243712;243713;243714	243714			3	
LALSPNAQVLALASGSSIHLYNTR	0	Unmodified	2495.3496	0.34962116	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	92.801	89.315	3	3.1111E-24	83770	160511_QHF_FH_JSI12i_3	147.26	134.59			0.97577	1.0408	14.762	7	1	Median	1.3008	1.0905	6.6023	2	0	Median	0.88378	1.0394	13.871	2	0	Median	0.99711	0.92999	28.364	2	1	Median	0.97577	1.0135	NaN	1	0	Median	576780000	301170000	275610000	132190000	69689000	62500000	259610000	135470000	124150000	144890000	75418000	69477000	40082000	20598000	19483000	29060	5635	27485	180313;180314;180315;180316;180317;180318;180319	243715;243716;243717;243718;243719;243720;243721;243722;243723;243724	243722			10	
LALSQNQQSSGAAGPTGK	1	Unmodified	1713.8646	0.86457574	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.643	5	5	1							4	2	2	3	28.369	27.624	2;3	4.8591E-117	24388	160511_QHF_FH_JSI11i_1	271.73	255.09			1.0355	0.93628	21.45	8	2	Median	1.1776	0.98277	19.666	3	1	Plateau	0.92178	1.1032	33.8	2	0	Median	1.054	1.0293	20.158	2	1	Median	0.81322	0.84264	NaN	1	0	Median	816980000	408680000	408310000	219190000	100800000	118390000	207340000	111130000	96217000	196920000	94153000	102760000	193540000	102600000	90938000	29061	660	27486	180320;180321;180322;180323;180324;180325;180326;180327;180328;180329;180330	243725;243726;243727;243728;243729;243730;243731;243732;243733;243734;243735;243736;243737;243738;243739;243740;243741	243725			17	
LALTHSLVLHYGLYK	1	Unmodified	1726.977	0.97702672	284	O15379	HDAC3	Histone deacetylase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	13.4	5.2			1						4	1	2	1	1	73.93	67.681	4	2.9028E-75	35529	160513_QHF_FH_JSI9Kac_6	225.13	190.69			1.0188	1.0073	42.818	5	1	Median	1.3369	1.144	NaN	1	0	Median	0.62358	0.72373	75.486	2	1	Median	0.92922	0.8877	NaN	1	0	Median	1.0188	1.0073	NaN	1	0	Median	313650000	164840000	148810000	89019000	42283000	46736000	175940000	94002000	81943000	18397000	11037000	7360700	30288000	17516000	12773000	29062	284	27487	180331;180332;180333;180334;180335	243742;243743;243744;243745	243742			4	
LALVFNIPLHQINQVYR	0	Unmodified	2037.1524	0.15236532	5152	Q9NZI7	UBP1	Upstream-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		88.939	81.031	3	7.2077E-08	44945	160513_QHF_FH_JSI11Kac_6	112.96	92.916			0.84844	0.72696	37.245	3	1	Median	0.84844	0.72696	NaN	1	1	Median	0.55813	0.67134	NaN	1	0	Median	1.41	1.3267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	280900000	152470000	128430000	54540000	30903000	23637000	147510000	87156000	60356000	78845000	34410000	44435000	0	0	0	29063	5152	27488	180336;180337;180338;180339	243746;243747;243748;243749;243750	243746			5	
LALVLFTYHLQR	0	Unmodified	1472.8504	0.85036964	3544	Q8N5I4	DHRSX	Dehydrogenase/reductase SDR family member on chromosome X	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	85.031	75.906	3	2.3817E-09	41666	160513_QHF_FH_JSI9Kac_6	117.09	103.41			1.0794	1.1376	22.94	3	0	Median	0.90365	0.77884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2252	1.1777	NaN	1	0	Median	1.0794	1.1376	NaN	1	0	Median	299840000	124950000	174890000	108150000	40952000	67196000	0	0	0	116410000	48631000	67782000	75275000	35367000	39908000	29064	3544	27489	180340;180341;180342	243751;243752;243753;243754	243753			4	
LALVNNTQPK	1	Unmodified	1096.6241	0.6240581	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	32.407	31.49	2	0.0068135	26629	160511_QHF_FH_JSI11i_2	58.916	43.765			1.056	0.79031	21.382	3	0	Plateau	1.0996	0.94783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80554	0.79031	NaN	1	0	Median	1.056	1.2102	NaN	1	0	Median	126940000	68522000	58418000	41502000	22829000	18673000	0	0	0	49895000	27375000	22520000	35543000	18318000	17224000	29065	3117	27490	180343;180344;180345	243755;243756;243757	243756			3	
LALVTGGEIASTFDHPELVK	1	Unmodified	2096.1154	0.11537069	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.11	2	14	5						4	6	6	6	7	89.328	87.441	2;3;4	2.6814E-57	40324	160513_QHF_FH_JSI12Kac_6	193.22	176.19			0.92298	0.92924	18.827	23	5	Median	1.1048	0.92924	5.8063	5	0	Median	0.71501	0.87244	17.502	6	2	Median	0.91388	0.91413	16.904	6	1	Median	0.99553	1.1192	15.688	6	2	Median	5982500000	3058500000	2924000000	1155000000	540830000	614130000	1280400000	761790000	518590000	1906200000	1018200000	888000000	1641000000	737690000	903270000	29066	2090	27491	180346;180347;180348;180349;180350;180351;180352;180353;180354;180355;180356;180357;180358;180359;180360;180361;180362;180363;180364;180365;180366;180367;180368;180369;180370	243758;243759;243760;243761;243762;243763;243764;243765;243766;243767;243768;243769;243770;243771;243772;243773;243774;243775;243776;243777;243778;243779;243780;243781;243782;243783;243784;243785;243786;243787;243788;243789;243790;243791;243792;243793;243794;243795;243796;243797;243798;243799;243800	243799			43	
LALYNLLAYVK	1	Unmodified	1279.754	0.75400964	2388	Q13325	IFIT5	Interferon-induced protein with tetratricopeptide repeats 5	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		95.069	85.867	2	5.7992E-05	48684	160513_QHF_FH_JSI11Kac_6	97.635	70.52			1.1462	1.0318	7.1281	2	0	Median	1.1612	0.98113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.0852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78330000	34089000	44242000	31390000	12931000	18459000	0	0	0	46940000	21158000	25782000	0	0	0	29067	2388	27492	180371;180372	243801	243801			1	
LALYQTAIESAR	0	Unmodified	1334.7194	0.71941505	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	60.631	59.484	2	0.016798	51051	160511_QHF_FH_JSI12i_2	50.194	35.988			1.1944	1.1636	13.858	2	2	Median	1.4535	1.2834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98147	1.055	NaN	1	1	Median	77997000	34071000	43926000	32966000	14564000	18401000	0	0	0	0	0	0	45031000	19507000	25524000	29068	3094	27493	180373;180374	243802;243803	243802			2	
LALYVYEYLLHIGAQK	1	Unmodified	1893.04	0.040020906	4499	Q9BWG4	SSBP4	Single-stranded DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	93.242	85.801	3	1.766E-17	45911	160513_QHF_FH_JSI12Kac_6	142.45	126.31			0.55729	0.55969	94.122	4	4	Median	0.50094	0.43472	NaN	1	1	Median	0.84191	0.9923	45.249	2	2	Median	0.15568	0.14729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	290510000	192890000	97619000	37734000	26504000	11230000	177870000	97048000	80824000	74909000	69344000	5565500	0	0	0	29069	4499	27494	180375;180376;180377;180378;180379	243804;243805;243806;243807;243808	243806			5	
LALYVYEYLLHVGAQK	1	Unmodified	1879.0244	0.024370842	4506	Q9BWW4;P81877	SSBP3;SSBP2	Single-stranded DNA-binding protein 3;Single-stranded DNA-binding protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	2	1	91.457	83.594	2;3	9.0285E-53	46520	160513_QHF_FH_JSI11Kac_6	218.01	185.01			1.1845	1.4192	84.296	7	5	Median	4.9025	4.2015	NaN	1	1	Median	2.9346	3.5204	47.907	3	3	Plateau	0.71021	0.66872	5.5721	2	0	Median	0.46942	0.49528	NaN	1	1	Median	2222600000	907410000	1315200000	645470000	68033000	577430000	659990000	234850000	425140000	473120000	320570000	152550000	444070000	283950000	160120000	29070	4506	27495	180380;180381;180382;180383;180384;180385;180386;180387	243809;243810;243811;243812;243813;243814;243815;243816;243817	243809			9	
LAMAIPDK	1	Unmodified	857.46807	0.46807473	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.278	45.601	2	0.0226	40963	160511_QHF_FH_JSI10i_1	43.808	12.518			0.83278	0.9879	18.876	4	1	Linear	0.98148	0.81067	NaN	1	0	Median	0.8784	1.0633	NaN	1	0	Median	1.2738	1.2554	NaN	1	1	Median	0.88886	0.91781	NaN	1	0	Median	294840000	154460000	140380000	46325000	20877000	25449000	80468000	44099000	36369000	94288000	49358000	44930000	73756000	40122000	33634000	29071	2216	27496	180388;180389;180390;180391	243818;243819	243819			2	
LAMDEIFQK	1	Unmodified	1093.5478	0.54778161	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	69.831	69.041	2	0.00088814	60833	160511_QHF_FH_JSI9i_2	72.23	53.454			0.59535	0.7143	45.455	5	3	Median	0.39902	0.34263	NaN	1	0	Median	0.59535	0.7143	NaN	1	1	Median	0.57763	0.56463	44.547	2	1	Median	0.91186	1.015	NaN	1	1	Median	656080000	397070000	259010000	108340000	84237000	24100000	154520000	82021000	72501000	221240000	149990000	71252000	171980000	80820000	91160000	29072	3036	27497	180392;180393;180394;180395;180396;180397	243820;243821;243822;243823;243824;243825	243823			6	
LAMDLPGHADEVYAVDWSPDGQR	0	Unmodified	2541.1594	0.15943713	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.43	0.495		4	3									4	3	85.092	84.494	3	4.1089E-11	74343	160511_QHF_FH_JSI11i_2	91.276	84.083			1.2171	1.211	5.9237	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2171	1.211	NaN	1	0	Median	1.2379	1.3113	5.2879	2	1	Median	61098000	25051000	36047000	0	0	0	0	0	0	30346000	14455000	15891000	30752000	10596000	20156000	29073	5054	27498	180398;180399;180400;180401;180402;180403;180404	243826;243827;243828;243829;243830;243831;243832;243833	243830			7	
LAMEEIYQK	1	Unmodified	1123.5583	0.5583463	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	50.159	49.493	2	0.0056115	43133	160511_QHF_FH_JSI9i_2	56.81	41.429			1.0086	1.0486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0086	1.0486	NaN	1	0	Median	30628000	15399000	15230000	0	0	0	0	0	0	0	0	0	30628000	15399000	15230000	29074	3667	27499	180405;180406	243834;243835	243835			2	
LAMILYDIPDIR	0	Unmodified	1431.7796	0.77957246	683	O95363	FARS2	Phenylalanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.554	82.193	2	0.00097678	46161	160513_QHF_FH_JSI11Kac_6	98.943	62.609			1.3106	1.2704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3106	1.2704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21775000	7915000	13860000	0	0	0	0	0	0	21775000	7915000	13860000	0	0	0	29075	683	27500	180407	243836	243836			1	
LAMLEEDLLALK	1	Unmodified	1357.7527	0.75268901	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		99.53	99.354	2	4.7311E-05	87105	160511_QHF_FH_JSI11i_2	110.53	97.442			6.873	6.868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.873	6.868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45424000	3436000	41988000	0	0	0	0	0	0	45424000	3436000	41988000	0	0	0	29076	3075	27501	180408	243837;243838	243838			2	
LAMLSGILLGNGTLPATILTSLFTDSLVK	1	Unmodified	2958.6715	0.67153215	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	1	4	2	2	104.86	98.769	2;3;4	1.7732E-155	58582	160513_QHF_FH_JSI10Kac_6	336.06	291.81			0.82028	0.89138	48.468	9	0	Median	0.27576	0.236	NaN	1	0	Median	0.82968	0.9792	10.674	4	0	Median	1.0332	0.99722	15.868	2	0	Median	0.65148	0.68751	30.186	2	0	Median	3298500000	1958300000	1340200000	525590000	340770000	184820000	1927800000	1092300000	835510000	76861000	34818000	42043000	768180000	490340000	277840000	29077	5722	27502	180409;180410;180411;180412;180413;180414;180415;180416;180417	243839;243840;243841;243842;243843;243844;243845;243846;243847;243848;243849;243850;243851;243852;243853;243854	243853			16	
LAMLSGILLGNGTLPATILTSLFTDSLVK	1	Oxidation (M)	2974.6664	0.66644677	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	103.58	94.986	3	9.7674E-41	54030	160513_QHF_FH_JSI11Kac_6	147.17	132.77			1.0075	0.81621	20.33	4	2	Linear	1.0377	0.90239	NaN	1	1	Median	0.97823	1.1626	NaN	1	1	Median	0.939	0.89153	NaN	1	0	Median	1.2877	1.3531	NaN	1	0	Median	1210800000	614180000	596650000	492850000	285340000	207520000	215110000	75624000	139480000	432840000	223100000	209740000	70042000	30127000	39916000	29078	5722	27502	180418;180419;180420;180421;180422	243855;243856;243857;243858;243859;243860;243861	243855		2740	7	
LAMLTGVLLANGTLNASILNSLYNENLVK	1	Unmodified	3058.6737	0.67365742	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	99.444	91.076	3;4	1.3458E-84	52062	160513_QHF_FH_JSI9Kac_6	208.89	202.98			0.81007	0.81391	29.832	4	0	Median	1.1361	0.97575	16.727	2	0	Median	0.64319	0.76416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.51737	0.53721	NaN	1	0	Median	1096500000	632070000	464450000	577550000	310490000	267060000	402800000	252150000	150650000	0	0	0	116170000	69440000	46730000	29079	3218	27503	180423;180424;180425;180426	243862;243863;243864;243865	243862			4	
LAMNILAQNASR	0	Unmodified	1300.6922	0.69215444	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.401	57.869	2	0.00011751	48472	160511_QHF_FH_JSI10i_3	86.624	75.795			1.2492	1.2015	21.787	2	0	Median	1.6943	1.4016	NaN	1	0	Median	0.92107	1.03	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62678000	31412000	31265000	31837000	14481000	17355000	30841000	16931000	13910000	0	0	0	0	0	0	29080	2180	27504	180427;180428	243866;243867;243868;243869	243866			4	
LAMQEFMILPVGAANFR	0	2 Oxidation (M)	1938.9696	0.96957485	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.93	6.62		2	6						7	2	5	4	4	88.693	84.138	2;3	1.0583E-83	40984	160513_QHF_FH_JSI12Kac_6	225.13	200.63			1.0983	1.1347	21.791	14	3	Median	1.445	1.2223	2.7523	2	0	Median	1.0414	1.2513	5.4882	4	1	Median	1.1635	1.089	7.9896	4	0	Median	1.0159	1.0512	41.829	4	2	Median	1274700000	616520000	658190000	202610000	89166000	113440000	153240000	72151000	81091000	487570000	227490000	260080000	431290000	227710000	203580000	29081	854	27505	180429;180430;180431;180432;180433;180434;180435;180436;180437;180438;180439;180440;180441;180442;180443	243870;243871;243872;243873;243874;243875;243876;243877;243878;243879;243880;243881;243882;243883;243884;243885;243886;243887;243888;243889;243890	243888		382;383	19	
LAMQEFMILPVGAANFR	0	Oxidation (M)	1922.9747	0.97466023	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.63	8	13	14						19	11	13	16	14	97.116	93.955	2;3	6.7551E-137	88779	160511_QHF_FH_JSI10i_2	287.13	244.79			1.0796	1.0777	13.864	52	7	Median	1.272	1.0958	10.302	11	0	Median	0.9546	1.1318	10.231	12	3	Median	1.0727	1.036	14.688	16	2	Median	1.0476	1.0919	15.652	13	2	Median	14473000000	6783000000	7690300000	2394700000	1024800000	1369900000	2508700000	1224700000	1284000000	4048100000	1919600000	2128400000	5521800000	2613800000	2908000000	29082	854	27505	180444;180445;180446;180447;180448;180449;180450;180451;180452;180453;180454;180455;180456;180457;180458;180459;180460;180461;180462;180463;180464;180465;180466;180467;180468;180469;180470;180471;180472;180473;180474;180475;180476;180477;180478;180479;180480;180481;180482;180483;180484;180485;180486;180487;180488;180489;180490;180491;180492;180493;180494;180495;180496;180497	243891;243892;243893;243894;243895;243896;243897;243898;243899;243900;243901;243902;243903;243904;243905;243906;243907;243908;243909;243910;243911;243912;243913;243914;243915;243916;243917;243918;243919;243920;243921;243922;243923;243924;243925;243926;243927;243928;243929;243930;243931;243932;243933;243934;243935;243936;243937;243938;243939;243940;243941;243942;243943;243944;243945;243946;243947;243948;243949;243950;243951;243952;243953;243954;243955;243956;243957;243958;243959;243960;243961;243962;243963;243964;243965;243966;243967	243939		382;383	77	
LAMQEFMILPVGAANFR	0	Unmodified	1906.9797	0.97974561	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.34	6	7	7						8	5	7	8	8	100.1	97.643	2;3	2.446E-111	51501	160513_QHF_FH_JSI10Kac_6	247.13	221.43			1.1525	1.1366	15.542	28	1	Median	1.2891	1.1991	5.7225	5	0	Plateau	0.92899	1.0859	20.023	7	0	Median	1.1525	1.1306	5.6106	8	0	Median	1.1025	1.1191	21.851	8	1	Median	118380000000	56579000000	61805000000	18085000000	7934600000	10150000000	16555000000	8681000000	7874100000	40960000000	18850000000	22110000000	42783000000	21114000000	21670000000	29083	854	27505	180498;180499;180500;180501;180502;180503;180504;180505;180506;180507;180508;180509;180510;180511;180512;180513;180514;180515;180516;180517;180518;180519;180520;180521;180522;180523;180524;180525	243968;243969;243970;243971;243972;243973;243974;243975;243976;243977;243978;243979;243980;243981;243982;243983;243984;243985;243986;243987;243988;243989;243990;243991;243992;243993;243994;243995;243996;243997;243998;243999	243999			32	
LAMQEFMILPVGASSFK	1	Unmodified	1867.9576	0.95761318	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.79	101.61	2	1.057E-10	87560	160511_QHF_FH_JSI12i_2	145.29	116.31			0.72929	0.8137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72929	0.8137	NaN	1	0	Median	169590000	101740000	67849000	0	0	0	0	0	0	0	0	0	169590000	101740000	67849000	29084	1044	27506	180526	244000;244001	244001			2	
LAMQLEEQASR	0	Unmodified	1274.6289	0.62888548	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	41.009	40.077	2	0.00028425	34398	160511_QHF_FH_JSI11i_2	77.192	48.793			0.9017	1.076	7.8941	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9017	1.076	NaN	1	0	Median	1.1539	1.1509	NaN	1	0	Median	0.86997	0.98337	NaN	1	0	Median	131820000	69032000	62790000	0	0	0	26356000	15313000	11042000	56578000	27815000	28763000	48888000	25903000	22985000	29085	4300	27507	180527;180528;180529	244002;244003;244004;244005	244004			3	
LANAKQTTEDEQAR	1	Acetyl (K)	1615.7802	0.7801774	3352	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	25.71	18.539	2	0.049294	11156	160513_QHF_FH_JSI12Kac_3	57.492	42.802			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29086	3352	27508	180530	244006	244006			1	
LANEERDAENPDEPK	1	Unmodified	1725.7806	0.78057134	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	14.512	14.083	2	0.028863	11808	160511_QHF_FH_JSI12i_1	74.76	49.968			0.9895	0.98012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9895	0.98012	NaN	1	1	Median	12932000	7715100	5216600	0	0	0	0	0	0	0	0	0	12932000	7715100	5216600	29087	4678	27509	180531	244007	244007			1	
LANELPDWFQTAK	1	Unmodified	1531.7671	0.76709352	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		82.7	82.087	2	0.0046965	72962	160511_QHF_FH_JSI10i_2	54.471	31.785			0.52783	0.51926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52783	0.51926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55764000	38513000	17251000	0	0	0	0	0	0	55764000	38513000	17251000	0	0	0	29088	5268	27510	180532;180533	244008;244009	244009			2	
LANFASLSDLHK	1	Unmodified	1314.6932	0.6932003	38	A8MXV4	NUDT19	Nucleoside diphosphate-linked moiety X motif 19, mitochondrial	yes	yes	0	0	0	0		By matching		By MS/MS	3	0			2								1		1	58.274	57.379	3	1.4665E-05	49334	160511_QHF_FH_JSI12i_3	96.745	88.834			0.91544	0.98264	16.16	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96016	1.1016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8728	0.87653	NaN	1	0	Median	126090000	68625000	57468000	0	0	0	32218000	20065000	12152000	0	0	0	93875000	48559000	45316000	29089	38	27511	180534;180535	244010;244011	244010			2	
LANFIPWGPASIQVALSR	0	Unmodified	1939.068	0.067966991	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0		By MS/MS			16	0									1		1			94.872	89.151	2	0.022058	51304	160513_QHF_FH_JSI10Kac_6	55.656	24.428			0.66739	0.8033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66739	0.8033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65065000	39856000	25209000	0	0	0	65065000	39856000	25209000	0	0	0	0	0	0	29090	1223	27512	180536	244012	244012			1	
LANGLGR	0	Unmodified	699.40277	0.40277236	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	6.9708	6.5544	2	0.044925	4382	160511_QHF_FH_JSI12i_2	44.945	2.1721			1.0747	1.088	4.6125	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98294	1.184	NaN	1	0	Median	1.0757	1.088	NaN	1	0	Median	0.9994	1.0993	NaN	1	0	Median	4359200000	2180300000	2178900000	0	0	0	1267400000	666000000	601370000	1722000000	816220000	905740000	1369900000	698130000	671780000	29091	3391	27513	180537;180538;180539	244013;244014;244015	244013			3	
LANIDEEMLQK	1	Unmodified	1302.649	0.64895222	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.83	54.171	2	2.3416E-10	48968	160511_QHF_FH_JSI11i_1	161.17	126.92			0.81018	0.83539	19.221	4	1	Median	1.3687	1.1212	NaN	1	1	Median	0.64176	0.76191	NaN	1	0	Median	0.9407	0.91595	NaN	1	0	Median	0.69776	0.73983	NaN	1	0	Median	3109300000	1505100000	1604200000	702530000	292950000	409590000	742250000	370020000	372230000	844000000	389170000	454840000	820540000	452960000	367580000	29092	1818	27514	180540;180541;180542;180543	244016;244017;244018;244019;244020;244021	244016			6	
LANILFTQELAR	0	Unmodified	1387.7823	0.78234966	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	80.963	80.291	2	0.0018455	69451	160511_QHF_FH_JSI12i_2	59.542	49.018			0.63749	0.62146	50.425	4	0	Median	0.86396	0.72961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.29111	0.28631	NaN	1	0	Median	0.65699	0.69549	38.605	2	0	Median	249380000	154060000	95320000	39712000	20492000	19220000	0	0	0	64434000	47340000	17094000	145230000	86228000	59006000	29093	3700	27515	180544;180545;180546;180547	244022	244022			1	
LANLINAEER	0	Unmodified	1141.6091	0.60913632	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	41.698	40.734	2	0.003101	35866	160511_QHF_FH_JSI10i_2	56.916	36.775			1.1426	1.3155	23.965	4	3	Median	1.9451	1.7024	NaN	1	1	Median	1.0613	1.3086	NaN	1	0	Median	0.94522	0.94853	NaN	1	1	Median	1.2301	1.3225	NaN	1	1	Median	185880000	89920000	95963000	30376000	10831000	19545000	46971000	23963000	23008000	68403000	36605000	31798000	40134000	18521000	21612000	29094	1778	27516	180548;180549;180550;180551;180552	244023;244024;244025;244026;244027;244028	244028			6	
LANLPEEVIQK	1	Unmodified	1252.7027	0.70270235	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	58.769	57.995	2	0.00012102	52350	160511_QHF_FH_JSI10i_1	84.817	70.519			0.91161	1.0246	23.448	7	3	Median	1.0765	0.90041	33.563	2	1	Median	0.91161	1.0547	NaN	1	0	Median	0.81831	0.811	35.894	2	1	Median	0.83084	0.88642	20.486	2	1	Median	918570000	427120000	491450000	243860000	111010000	132850000	166540000	74922000	91621000	301660000	138650000	163020000	206500000	102550000	103960000	29095	1778	27517	180553;180554;180555;180556;180557;180558;180559	244029;244030;244031;244032;244033;244034;244035;244036;244037;244038	244035			10	
LANNGTVLR	0	Unmodified	956.54033	0.54032847	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	19.892	19.091	2	0.059279	16091	160511_QHF_FH_JSI9i_2	33.797	4.4205			1.0603	0.93842	9.1308	5	0	Median	1.0603	0.92554	0	2	0	Median	0.91347	1.0923	NaN	1	0	Median	1.0659	1.1037	NaN	1	0	Median	0.84124	0.93842	NaN	1	0	Median	255970000	123760000	132210000	84280000	32794000	51486000	64584000	35375000	29208000	76682000	42229000	34454000	30429000	13363000	17065000	29096	2970	27518	180560;180561;180562;180563;180564	244039	244039			1	
LANQAADYFGDAFK	1	Unmodified	1529.7151	0.71505795	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	2	3	3	71.13	70.442	2;3	2.3586E-15	63698	160511_QHF_FH_JSI10i_1	167.44	144.8			0.96001	0.91024	22.231	11	3	Median	1.0691	0.90919	40.247	3	1	Median	0.71044	0.86368	7.4251	2	0	Median	0.96093	0.92172	17.555	3	1	Median	0.85727	0.91619	19.931	3	1	Plateau	1296900000	704340000	592610000	250360000	134290000	116070000	364810000	206920000	157890000	372870000	204030000	168840000	308910000	159100000	149810000	29097	3766	27519	180565;180566;180567;180568;180569;180570;180571;180572;180573;180574;180575	244040;244041;244042;244043;244044;244045;244046;244047;244048;244049;244050;244051;244052;244053;244054	244047			15	
LANQDEGPEDEEDEVPK	1	Unmodified	1912.8174	0.81741035	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				34.75	33.507	2	1.0701E-16	29418	160511_QHF_FH_JSI9i_1	124.86	111.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29098	3094	27520	180576	244055	244055			1	
LANQDEGPEDEEDEVPKK	2	Unmodified	2040.9124	0.91237337	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.966	26.536	3	6.4747E-05	23452	160511_QHF_FH_JSI10i_1	84.493	74.026			0.44501	0.47988	16.975	2	2	Median	NaN	NaN	NaN	0	0	Median	0.38153	0.42561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51905	0.54108	NaN	1	1	Median	40093000	30270000	9823100	0	0	0	20072000	16826000	3246100	0	0	0	20021000	13444000	6577000	29099	3094	27521	180577;180578;180579	244056;244057;244058	244058			3	
LANQFAIYK	1	Unmodified	1066.5811	0.58113065	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	49.307	48.316	2	0.00070425	41522	160511_QHF_FH_JSI11i_2	75.692	53.163			0.79182	0.80085	19.842	3	1	Plateau	1.3279	1.1363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79182	0.80085	NaN	1	0	Median	0.72034	0.81111	NaN	1	0	Median	451720000	231830000	219890000	120640000	50387000	70251000	0	0	0	174730000	88712000	86020000	156350000	92732000	63617000	29100	1544	27522	180580;180581;180582	244059;244060;244061;244062	244061			4	
LANQFAIYKPVTDFFLQLVDAGK	2	Unmodified	2597.3894	0.38936071	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	10.8	6.37			2						3	1		2	2	101.03	95.426	3	7.059E-50	90123	160511_QHF_FH_JSI12i_3	243.37	218.22			0.79169	0.83041	29.964	5	1	Median	0.5976	0.50866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96652	0.93368	16.098	2	0	Median	0.66073	0.68541	27.138	2	1	Median	2995800000	1668200000	1327600000	667120000	418170000	248950000	0	0	0	1157900000	578590000	579260000	1170800000	671460000	499350000	29101	1544	27523	180583;180584;180585;180586;180587	244063;244064;244065;244066;244067;244068;244069	244067			6	
LANQLLTDLVDDNYFYLFDLK	1	Unmodified	2532.2788	0.27880721	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			99.87	92.432	3	4.2558E-08	55329	160513_QHF_FH_JSI10Kac_6	87.326	79.614			1.3303	1.3189	39.642	2	0	Median	2.0282	1.7456	NaN	1	0	Median	0.87262	0.99647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136010000	61719000	74294000	51972000	16824000	35148000	84041000	44894000	39146000	0	0	0	0	0	0	29102	3101	27524	180588;180589	244070;244071	244071			2	
LANRAPEPTPQQVAQQQ	0	Unmodified	1874.9599	0.9598731	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.831	4	3	3							2	2	4	2	32.768	32.275	2;3	3.7235E-09	28807	160511_QHF_FH_JSI11i_1	141.37	118.45			1.1945	1.0387	22.128	8	3	Median	1.2849	1.0836	12.468	2	1	Median	0.81866	0.93396	NaN	1	0	Median	1.179	1.0934	25.92	3	2	Plateau	0.93557	0.94779	10.56	2	0	Median	217890000	98881000	119010000	47073000	17534000	29540000	35480000	20798000	14682000	78953000	33261000	45692000	56387000	27289000	29098000	29103	2578	27525	180590;180591;180592;180593;180594;180595;180596;180597;180598;180599	244072;244073;244074;244075;244076;244077;244078;244079;244080;244081;244082;244083;244084;244085;244086	244076			15	
LANSEPVGTQTAK	1	Unmodified	1314.6779	0.67794416	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		17.225	17.039	2	0.002652	14425	160511_QHF_FH_JSI11i_1	65.842	27.549			0.7981	0.85075	18.123	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62853	0.74842	NaN	1	1	Median	1.0134	0.96706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76814000	46037000	30777000	0	0	0	36886000	23741000	13145000	39928000	22297000	17632000	0	0	0	29104	5458	27526	180600;180601	244087;244088	244087			2	
LANVMMGPYR	0	Unmodified	1150.5627	0.56272017	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.43	0.495		4	3							2	2	1	2	51.396	50.352	2	7.6106E-11	43530	160511_QHF_FH_JSI11i_2	143.61	128.94			0.68961	0.71331	27.973	7	0	Median	1.122	0.92615	19.987	2	0	Median	0.59772	0.73376	33.173	2	0	Median	0.4749	0.47981	NaN	1	0	Median	0.61066	0.65971	11.047	2	0	Median	916810000	529650000	387160000	187160000	91863000	95301000	259990000	160730000	99264000	171120000	108270000	62856000	298530000	168790000	129740000	29105	1139	27527	180602;180603;180604;180605;180606;180607;180608	244089;244090;244091;244092;244093	244092			3	
LANVMMGPYRQDLLAK	1	Unmodified	1818.9484	0.94844548	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	69.146	68.259	2;3	1.8016E-09	60494	160511_QHF_FH_JSI11i_3	165.7	122.07			0.82838	0.82318	10.643	6	0	Median	1.0663	0.86459	19.259	2	0	Median	0.741	0.85417	5.157	2	0	Median	0.82838	0.78252	7.0964	2	0	Median	NaN	NaN	NaN	0	0	Median	2541500000	1320900000	1220600000	945120000	496150000	448970000	574730000	343920000	230810000	1006500000	465660000	540810000	15196000	15196000	0	29106	1139	27528	180609;180610;180611;180612;180613;180614;180615	244094;244095;244096;244097;244098;244099;244100;244101;244102;244103;244104;244105;244106;244107	244094			14	
LAPALALPAPALR	0	Unmodified	1272.7918	0.79179213	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	3	9	9							5	6	6	4	82.412	81.83	2;3	3.2437E-06	73070	160511_QHF_FH_JSI11i_3	122.52	99.088			0.9501	0.99937	19.34	19	3	Median	1.2525	1.0554	4.3704	3	0	Median	0.74007	0.88611	21.453	6	1	Median	0.97754	0.9515	20.21	6	2	Median	1.0291	1.0958	23.695	4	0	Median	2070600000	1030200000	1040500000	308610000	132490000	176120000	400530000	224800000	175730000	874770000	436180000	438590000	486700000	236690000	250000000	29107	950	27529	180616;180617;180618;180619;180620;180621;180622;180623;180624;180625;180626;180627;180628;180629;180630;180631;180632;180633;180634;180635;180636	244108;244109;244110;244111;244112;244113;244114;244115;244116;244117;244118;244119;244120;244121;244122;244123;244124;244125;244126;244127;244128;244129;244130;244131;244132;244133;244134;244135;244136;244137;244138;244139	244111			32	
LAPALPAWPHR	0	Unmodified	1227.6877	0.68766141	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.569	60.742	3	0.00016151	49985	160511_QHF_FH_JSI9i_3	52.725	43.293			0.88717	0.91126	18.235	4	1	Median	1.1026	0.90898	NaN	1	0	Median	0.88233	1.0078	NaN	1	0	Median	0.71196	0.66267	NaN	1	1	Median	0.89203	0.91355	NaN	1	0	Median	77440000	44917000	32524000	21749000	11369000	10380000	23639000	15107000	8531700	16422000	10748000	5674200	15630000	7692500	7937700	29108	4188	27530	180637;180638;180639;180640	244140;244141;244142;244143	244142			4	
LAPANGMPTGENVISVAELINAMK	1	Unmodified	2439.2502	0.25016639	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	102.09	102.07	3	9.8609E-10	89869	160511_QHF_FH_JSI9i_2	101.75	90.125			1.0095	0.99277	8.0045	3	3	Median	1.0095	0.87829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0737	1.0209	NaN	1	1	Median	0.97052	0.99277	NaN	1	1	Median	725510000	440720000	284790000	105430000	57148000	48278000	0	0	0	249860000	141460000	108410000	370220000	242110000	128110000	29109	655	27531	180641;180642;180643	244144;244145;244146	244145			3	
LAPASNMTSQRPVSSTGINFDNPSVQK	1	Unmodified	2845.4029	0.4028553	4853	Q9HCD5	NCOA5	Nuclear receptor coactivator 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			60.863	59.558	3	3.7168E-05	48741	160511_QHF_FH_JSI9i_3	47.237	40.514			0.61844	0.74006	29.137	3	1	Median	1.0614	0.8591	NaN	1	0	Median	0.51148	0.6019	29.223	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121030000	69571000	51455000	57243000	25827000	31415000	63783000	43743000	20040000	0	0	0	0	0	0	29110	4853	27532	180644;180645;180646	244147;244148;244149;244150;244151	244149			5	
LAPDRESLLLK	1	Unmodified	1253.7343	0.73433683	2341	Q13017	ARHGAP5	Rho GTPase-activating protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		48.292	47.232	3	0.013134	39608	160511_QHF_FH_JSI10i_3	39.625	28.46			0.7802	1.4318	41.779	3	0	Plateau	0.7802	0.644	NaN	1	0	Median	0.73385	0.80874	NaN	1	0	Median	1.5685	1.4478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104130000	47567000	56562000	22775000	11803000	10972000	30085000	16532000	13553000	51268000	19232000	32037000	0	0	0	29111	2341	27533	180647;180648;180649	244152;244153;244154;244155	244154			4	
LAPDYDALDVANK	1	Unmodified	1403.6933	0.69325988	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.28	5.6	8	4				5	1			4	5	4	5	60.629	56.317	2;3	1.9263E-22	53794	160511_QHF_FH_JSI10i_1	179.42	156.07			0.97392	0.9861	117.03	16	5	Median	1.1668	1.0183	176.22	3	1	Plateau	0.85958	1.0026	100.75	5	2	Median	0.94672	0.93204	148.33	4	1	Median	0.99714	1.0611	34.737	4	1	Median	23822000000	11584000000	12238000000	5863600000	2912000000	2951500000	6123400000	2992300000	3131100000	6313800000	3028100000	3285700000	5521400000	2651300000	2870000000	29112	2017	27534	180650;180651;180652;180653;180654;180655;180656;180657;180658;180659;180660;180661;180662;180663;180664;180665;180666;180667	244156;244157;244158;244159;244160;244161;244162;244163;244164;244165;244166;244167;244168;244169;244170;244171;244172;244173;244174;244175;244176;244177;244178;244179;244180;244181;244182;244183;244184;244185;244186;244187;244188;244189;244190;244191;244192;244193;244194	244174			39	
LAPEFAK	1	Unmodified	774.42759	0.42759012	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.61	6.54	4	4	2				3	3	2	5	4	4	5	35.331	30.516	2	0.0077995	25886	160511_QHF_FH_JSI11i_2	86.086	29.576			0.9923	1.003	20.673	18	0	Median	1.1092	0.93667	23.979	5	0	Median	1.1186	1.333	17.317	4	0	Linear	1.1317	1.1398	19.94	4	0	Median	0.89356	0.96885	7.2174	5	0	Median	17032000000	7833700000	9198400000	3561400000	1547900000	2013500000	4156700000	2087700000	2069100000	5376000000	2274800000	3101200000	3937900000	1923400000	2014600000	29113	1333	27535	180668;180669;180670;180671;180672;180673;180674;180675;180676;180677;180678;180679;180680;180681;180682;180683;180684;180685	244195;244196;244197;244198;244199;244200;244201;244202;244203;244204;244205;244206;244207;244208;244209;244210;244211	244205			17	
LAPEFAKR	1	Acetyl (K)	972.53927	0.53926584	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	48.678	38.311	2	0.022128	21744	160513_QHF_FH_JSI10Kac_4	95.352	48.689			0.52814	0.5738	63.214	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9466	1.1335	NaN	1	0	Median	0.32658	0.32055	NaN	1	0	Median	0.52814	0.5738	NaN	1	0	Median	214140000	149130000	65012000	0	0	0	37021000	18198000	18823000	145950000	110970000	34981000	31172000	19964000	11208000	29114	1333	27536	180686;180687;180688;180689;180690	244212;244213;244214;244215;244216	244212	1261		5	
LAPEYEAAATR	0	Unmodified	1190.5932	0.5931519	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	2	2								2		2		29.953	29.226	2	0.013996	25579	160511_QHF_FH_JSI9i_1	52.79	45.31			0.93961	0.84124	6.0238	4	2	Median	1.0339	0.84572	4.1764	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81967	0.81105	8.5962	2	1	Median	NaN	NaN	NaN	0	0	Median	612310000	332610000	279700000	323230000	163750000	159480000	0	0	0	289090000	168860000	120220000	0	0	0	29115	1344	27537	180691;180692;180693;180694	244217;244218;244219	244218			3	
LAPEYEK	1	Unmodified	848.42798	0.42798405	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.64	3	1	1				2			1	2	2	2	19.048	16.524	2;3	0.020108	15256	160511_QHF_FH_JSI12i_1	57.281	23.765			0.86162	0.87401	49.472	7	1	Median	0.31867	0.25367	NaN	1	1	Median	0.69134	0.83256	6.4569	2	0	Median	1.0038	0.9796	16.129	2	0	Median	0.87896	0.93457	5.7483	2	0	Median	1834400000	990610000	843740000	128460000	109410000	19049000	520580000	307160000	213420000	701370000	320140000	381230000	483940000	253900000	230040000	29116	1034	27538	180695;180696;180697;180698;180699;180700;180701	244220;244221;244222;244223;244224;244225;244226	244221			7	
LAPGFDAELIVK	1	Unmodified	1271.7125	0.71253876	676	O95302;Q75LS8	FKBP9;FKBP9P1	Peptidyl-prolyl cis-trans isomerase FKBP9;Putative FK506-binding protein 9-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.708	78.87	2	0.0012601	68141	160511_QHF_FH_JSI12i_2	64.103	45.323			1.0253	1.0171	20.789	3	0	Median	NaN	NaN	NaN	0	0	Median	0.63402	0.77642	NaN	1	0	Median	1.0253	1.0171	NaN	1	0	Median	1.0719	1.1685	NaN	1	0	Median	110240000	57176000	53062000	0	0	0	27309000	17283000	10026000	44672000	22640000	22033000	38257000	17254000	21004000	29117	676	27539	180702;180703;180704;180705	244227;244228;244229;244230;244231;244232	244228			6	
LAPGGHVGR	0	Unmodified	862.47733	0.47733428	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	9.1568	8.7986	2	9.4063E-05	6566	160511_QHF_FH_JSI10i_3	94.262	59.156			0.8839	0.93276	9.5546	6	0	Median	1.2397	1.0227	11.491	2	0	Median	0.7606	0.9063	5.1366	2	0	Median	0.95504	0.92575	NaN	1	0	Median	0.81806	0.83919	NaN	1	0	Median	4835000000	2377700000	2457300000	2160200000	953270000	1206900000	1786800000	947450000	839370000	602080000	293110000	308970000	285960000	183870000	102080000	29118	1457	27540	180706;180707;180708;180709;180710;180711	244233;244234;244235;244236;244237;244238;244239;244240;244241;244242	244236			10	
LAPGTIVEVWK	1	Unmodified	1211.6914	0.69140938	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.1	1	4	5						2	2	2	5	3	78.125	75.811	2	6.4424E-05	67450	160511_QHF_FH_JSI11i_2	93.111	81.959			0.95709	0.96121	18.501	11	3	Median	1.2254	1.0295	15.041	2	0	Median	0.88188	1.0602	27.39	2	0	Median	0.86647	0.85184	19.819	4	1	Median	0.95031	1.0366	9.1403	3	2	Median	1157300000	585410000	571860000	151320000	74027000	77293000	249630000	138000000	111640000	399960000	192690000	207270000	356360000	180700000	175660000	29119	874	27541	180712;180713;180714;180715;180716;180717;180718;180719;180720;180721;180722;180723	244243;244244;244245;244246;244247;244248;244249;244250;244251;244252;244253;244254;244255;244256;244257	244251			15	
LAPGYINQEVVR	0	Unmodified	1357.7354	0.73539946	4172	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.563	51.036	2	0.014276	44025	160511_QHF_FH_JSI11i_2	43.297	21.849			0.77018	0.76222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77018	0.76222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47855000	24153000	23702000	0	0	0	0	0	0	47855000	24153000	23702000	0	0	0	29120	4172	27542	180724	244258	244258			1	
LAPIMFGIK	1	Unmodified	988.57796	0.57795953	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	78.856	78.158	2	0.00052238	68919	160511_QHF_FH_JSI9i_2	79.116	63.677			0.96614	0.92128	8.6409	7	3	Median	1.0572	0.90967	NaN	1	0	Median	0.71714	0.85442	14.301	2	1	Median	0.97728	0.94101	6.0257	2	1	Median	0.92704	0.96455	6.4905	2	1	Median	422420000	218760000	203660000	37297000	17956000	19340000	93294000	54057000	39237000	155040000	79432000	75611000	136790000	67313000	69475000	29121	5485	27543	180725;180726;180727;180728;180729;180730;180731	244259;244260;244261;244262;244263;244264;244265;244266;244267;244268;244269	244263			11	
LAPITSDPTEATAVGAVEASFK	1	Unmodified	2174.1107	0.11067925	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.803	14	9	7							6	6	9	9	92.603	92.172	2;3	2.4591E-187	83935	160511_QHF_FH_JSI12i_1	322.89	288.63			0.93691	0.96162	47.933	27	8	Median	1.1545	0.9963	15.23	5	1	Median	0.81733	0.96873	8.2661	6	1	Median	0.94176	0.93046	26.686	8	2	Median	0.88499	1.0442	81.824	8	4	Plateau	41200000000	19220000000	21979000000	5724100000	2278600000	3445400000	10441000000	5168900000	5272200000	17271000000	7658300000	9612900000	7763400000	4114600000	3648800000	29122	1055	27544	180732;180733;180734;180735;180736;180737;180738;180739;180740;180741;180742;180743;180744;180745;180746;180747;180748;180749;180750;180751;180752;180753;180754;180755;180756;180757;180758;180759;180760;180761	244270;244271;244272;244273;244274;244275;244276;244277;244278;244279;244280;244281;244282;244283;244284;244285;244286;244287;244288;244289;244290;244291;244292;244293;244294;244295;244296;244297;244298;244299;244300;244301;244302;244303;244304;244305;244306;244307;244308;244309;244310;244311;244312;244313;244314;244315;244316;244317;244318;244319;244320;244321;244322;244323;244324;244325;244326;244327;244328;244329;244330;244331;244332;244333;244334;244335;244336;244337;244338;244339;244340;244341	244296			72	
LAPLLLGNPQPMVM	0	Unmodified	1492.8146	0.81457776	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				102.13	101.96	2	0.00063601	90152	160511_QHF_FH_JSI9i_1	69.825	60.17			1.3847	1.1195	NaN	1	0	Median	1.3847	1.1195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49929000	24373000	25556000	49929000	24373000	25556000	0	0	0	0	0	0	0	0	0	29123	4653	27545	180762	244342	244342			1	
LAPLLLVLAQLINMNLR	0	Oxidation (M)	1920.1594	0.15942454	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									3	1		2		104.88	95.53	2;3	2.7011E-24	54609	160513_QHF_FH_JSI11Kac_6	155.98	144.33			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29124	5135	27546	180763;180764;180765	244343;244344;244345	244343		2584	3	
LAPLLLVLAQLINMNLR	0	Unmodified	1904.1645	0.16450991	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14.3	2.36				1					2			2	1	105.72	96.379	2;3	2.8128E-69	54992	160513_QHF_FH_JSI11Kac_6	208.33	185.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29125	5135	27546	180766;180767;180768	244346;244347;244348	244346			3	
LAPNEFPHK	1	Unmodified	1051.5451	0.5450795	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	27.53	27.507	2;3	0.00022016	23028	160511_QHF_FH_JSI12i_3	61.78	53.198			1.3428	1.2299	9.3825	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5135	1.4126	12.442	2	0	Median	1.2724	1.3064	6.9493	2	0	Median	374920000	177090000	197840000	0	0	0	0	0	0	157120000	76035000	81081000	217810000	101050000	116760000	29126	4164	27547	180769;180770;180771;180772	244349;244350;244351;244352;244353	244352			5	
LAPPLVTLLSAEPELQYVALR	0	Unmodified	2292.3093	0.30931947	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							2	3	2	4	102.88	102.81	2;3	5.2372E-47	91306	160511_QHF_FH_JSI10i_2	163.35	159.08			1.1282	1.1733	15.148	10	1	Median	1.6506	1.3789	28.634	2	0	Median	1.0732	1.3185	5.763	3	1	Plateau	1.2261	1.1613	7.2488	2	0	Median	1.095	1.1084	5.5983	3	0	Median	1974100000	949560000	1024600000	183990000	82559000	101430000	233820000	112360000	121460000	720530000	349150000	371380000	835770000	405480000	430290000	29127	2296	27548	180773;180774;180775;180776;180777;180778;180779;180780;180781;180782;180783	244354;244355;244356;244357;244358;244359;244360;244361;244362;244363	244360			10	
LAPPLVTLLSGEPEVQYVALR	0	Unmodified	2264.278	0.27801935	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	3	3	3	102.33	102.26	2;3	1.7105E-46	91440	160511_QHF_FH_JSI11i_3	210.07	137.78			0.90473	1.0186	16.51	10	3	Median	1.2229	1.0461	NaN	1	0	Median	0.88663	1.066	13.078	3	1	Plateau	1.075	0.99355	15.572	3	1	Median	0.89979	0.90005	8.7597	3	1	Plateau	2466300000	1315200000	1151100000	193910000	96151000	97755000	460000000	233340000	226660000	587980000	270630000	317350000	1224400000	715070000	509340000	29128	2046	27549	180784;180785;180786;180787;180788;180789;180790;180791;180792;180793	244364;244365;244366;244367;244368;244369;244370;244371;244372	244364			9	
LAPPPPPAAAPGTPHLLSK	1	Unmodified	1831.0356	0.03560423	4824	Q9HAH7	FBRS	Probable fibrosin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.695	60.42	3	0.00062103	52004	160511_QHF_FH_JSI12i_3	49.973	45.871			1.3038	1.3247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3038	1.3247	NaN	1	0	Median	34066000	16261000	17805000	0	0	0	0	0	0	0	0	0	34066000	16261000	17805000	29129	4824	27550	180794	244373	244373			1	
LAPVPFFSLLQYE	0	Unmodified	1522.8072	0.80716742	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.1	4	4	4						4	4	4	4	4	102.72	100.54	2	6.1524E-12	50047	160513_QHF_FH_JSI12Kac_6	147.2	136.04			0.94701	1.0013	9.8977	16	1	Median	1.3495	1.1209	7.4491	4	0	Median	0.82846	1.0028	6.2527	4	0	Median	0.94673	0.90574	13.431	4	0	Median	0.94596	1.0302	2.6384	4	1	Linear	7071900000	3690600000	3381300000	1220200000	564000000	656180000	1537000000	877780000	659230000	2297700000	1164700000	1133000000	2017100000	1084100000	932940000	29130	877	27551	180795;180796;180797;180798;180799;180800;180801;180802;180803;180804;180805;180806;180807;180808;180809;180810	244374;244375;244376;244377;244378;244379;244380;244381;244382;244383;244384;244385;244386;244387;244388;244389;244390;244391;244392;244393;244394;244395;244396;244397;244398;244399;244400	244398			27	
LAPVYLSNR	0	Unmodified	1031.5764	0.57637963	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			43.113	41.579	2	0.013241	34711	160511_QHF_FH_JSI10i_3	43.808	21.677			1.1564	1.3224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1564	1.3224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35208000	16950000	18257000	0	0	0	35208000	16950000	18257000	0	0	0	0	0	0	29131	207	27552	180811;180812	244401;244402	244402			2	
LAQAAQSSAATITQLAEVVK	1	Unmodified	1999.095	0.094969603	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				86.883	86.394	3	0.050133	75947	160511_QHF_FH_JSI9i_2	22.936	19.216			1.6783	1.4445	NaN	1	1	Median	1.6783	1.4445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11032000	3403100	7628800	11032000	3403100	7628800	0	0	0	0	0	0	0	0	0	29132	5628	27553	180813	244403	244403			1	
LAQAAQSSVATITR	0	Unmodified	1415.7732	0.77324153	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.9	4	4	3			4	4	1		4	4	7	5	38.102	33.005	2;3	1.513E-30	20517	160513_QHF_FH_JSI11Kac_4	171.32	123.75			1.0682	0.99372	19.783	20	3	Median	1.26	0.88965	21.569	4	0	Median	0.82654	0.9825	5.6329	4	0	Median	1.0925	1.0171	20.092	7	3	Median	1.1138	1.2068	21.355	5	0	Median	1955600000	985660000	969910000	323190000	147920000	175270000	494100000	292750000	201350000	691870000	327350000	364520000	446400000	217630000	228770000	29133	5616	27554	180814;180815;180816;180817;180818;180819;180820;180821;180822;180823;180824;180825;180826;180827;180828;180829;180830;180831;180832;180833	244404;244405;244406;244407;244408;244409;244410;244411;244412;244413;244414;244415;244416;244417;244418;244419;244420;244421;244422;244423;244424;244425;244426;244427;244428;244429;244430;244431;244432	244417			28	
LAQAEAAGLHK	1	Unmodified	1107.6037	0.60365701	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.03	16.776	2	0.01417	13567	160511_QHF_FH_JSI11i_2	52.579	37.905			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5742000	5742000	0	0	0	0	0	0	0	5742000	5742000	0	0	0	0	29134	2197	27555	180834	244433	244433			1	
LAQAGYR	0	Unmodified	777.41334	0.41333704	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	9.8344	9.508	2	0.0052675	7319	160511_QHF_FH_JSI9i_2	83.087	19.445			1.1059	1.1382	13.077	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0543	1.0293	14.225	2	0	Median	1.1059	1.1896	NaN	1	0	Median	527180000	235520000	291660000	0	0	0	0	0	0	291210000	138420000	152790000	235970000	97096000	138870000	29135	4126	27556	180835;180836;180837;180838	244434;244435	244434			2	
LAQALHEMR	0	Oxidation (M)	1083.5495	0.54951295	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									3	2	14.07	14.094	2;3	0.0025318	7732	160511_QHF_FH_JSI11i_3	67.993	51.849			0.86343	0.83982	87.972	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7487	3.5035	107.61	3	2	Plateau	1.0583	1.0473	NaN	1	0	Median	558930000	232990000	325940000	0	0	0	0	0	0	335950000	114510000	221450000	222970000	118480000	104490000	29136	1180	27557	180839;180840;180841;180842;180843	244436;244437;244438;244439;244440	244436		807	5	
LAQALHEMR	0	Unmodified	1067.5546	0.55459833	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	3.52		7	6						1	4	2	3	5	19.546	18.342	2;3	1.5643E-06	14533	160511_QHF_FH_JSI12i_3	150.36	127.43			0.49733	0.5191	100.1	14	11	Median	0.43759	0.37635	40.041	4	4	Median	0.88618	1.0244	107.09	2	2	Median	0.69218	0.65716	139.7	3	3	Median	0.7627	0.7623	91.594	5	2	Median	4152000000	1821400000	2330700000	476670000	303860000	172800000	237620000	108140000	129470000	1831500000	535080000	1296400000	1606200000	874300000	731950000	29137	1180	27557	180844;180845;180846;180847;180848;180849;180850;180851;180852;180853;180854;180855;180856;180857	244441;244442;244443;244444;244445;244446;244447;244448;244449;244450;244451;244452;244453;244454;244455;244456;244457	244456			17	
LAQANGWGVMVSHR	0	Unmodified	1524.762	0.76196534	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.74	6.67		7	12						16	9	11	8	7	50.907	45.982	2;3	6.4351E-81	25516	160513_QHF_FH_JSI10Kac_6	231.92	192.3			0.89827	0.88279	19.905	34	7	Median	1.0239	0.84581	22.185	9	2	Median	0.73132	0.88249	27.998	10	3	Median	0.90319	0.87172	8.9167	8	1	Median	0.94945	0.98684	9.9577	7	1	Median	22814000000	11439000000	11375000000	6229200000	2751800000	3477400000	11189000000	6062400000	5126500000	3577600000	1668800000	1908800000	1818600000	955930000	862660000	29138	854	27558	180858;180859;180860;180861;180862;180863;180864;180865;180866;180867;180868;180869;180870;180871;180872;180873;180874;180875;180876;180877;180878;180879;180880;180881;180882;180883;180884;180885;180886;180887;180888;180889;180890;180891;180892	244458;244459;244460;244461;244462;244463;244464;244465;244466;244467;244468;244469;244470;244471;244472;244473;244474;244475;244476;244477;244478;244479;244480;244481;244482;244483;244484;244485;244486;244487;244488;244489;244490;244491;244492;244493;244494;244495;244496;244497;244498;244499;244500;244501;244502;244503;244504;244505;244506;244507;244508;244509;244510;244511;244512;244513;244514	244510			57	
LAQANGWGVMVSHR	0	Oxidation (M)	1540.7569	0.75687996	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	4.38		1	4					5	29	15	12	7	5	45.485	37.084	2;3	5.3865E-37	18880	160513_QHF_FH_JSI12Kac_6	180.18	94.168			1.0845	1.1269	10.781	35	10	Median	1.331	1.1286	13.319	12	3	Median	0.96346	1.1486	8.3469	11	2	Median	1.0633	1.0217	7.5124	7	3	Median	1.0902	1.1453	9.0253	5	2	Median	9444300000	4796700000	4647600000	4110900000	1995600000	2115300000	3047100000	1604800000	1442200000	1264200000	627390000	636850000	1022100000	568860000	453250000	29139	854	27558	180893;180894;180895;180896;180897;180898;180899;180900;180901;180902;180903;180904;180905;180906;180907;180908;180909;180910;180911;180912;180913;180914;180915;180916;180917;180918;180919;180920;180921;180922;180923;180924;180925;180926;180927;180928;180929;180930;180931	244515;244516;244517;244518;244519;244520;244521;244522;244523;244524;244525;244526;244527;244528;244529;244530;244531;244532;244533;244534;244535;244536;244537;244538;244539;244540;244541;244542;244543;244544;244545;244546;244547;244548;244549;244550;244551;244552;244553;244554;244555;244556;244557;244558;244559;244560;244561;244562;244563;244564;244565;244566	244548		384	52	
LAQATQER	0	Unmodified	915.47739	0.47739386	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		7.5036	-0.10326	2	0.024998	2797	160513_QHF_FH_JSI11Kac_4	53.166	3.0399			1.0689	1.0438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0689	1.0438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7265100	3179300	4085800	0	0	0	0	0	0	7265100	3179300	4085800	0	0	0	29140	5479	27559	180932	244567	244567			1	
LAQAWFNTHR	0	Unmodified	1242.6258	0.62578944	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			47.604	38.994	2	0.0029466	21538	160513_QHF_FH_JSI10Kac_6	68.735	39.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29141	3959	27560	180933	244568	244568			1	
LAQDFLDSQNLSAYNTR	0	Unmodified	1954.9385	0.93846896	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.09	0.287	10	1								2	4	3	2	69.673	69.142	2;3	2.2668E-37	62671	160511_QHF_FH_JSI10i_1	240.46	219.62			1.0486	1.0836	14.682	11	5	Median	1.2846	1.0623	25.445	2	0	Median	0.89883	1.0545	9.9804	4	2	Linear	1.1617	1.1464	21.094	3	2	Median	0.97477	1.024	7.3771	2	1	Median	1357400000	654020000	703340000	190290000	81091000	109200000	433990000	223690000	210300000	554640000	268870000	285770000	178440000	80369000	98071000	29142	5119	27561	180934;180935;180936;180937;180938;180939;180940;180941;180942;180943;180944	244569;244570;244571;244572;244573;244574;244575;244576;244577;244578;244579;244580;244581;244582;244583;244584;244585	244579			17	
LAQDGAHVVVSSR	0	Unmodified	1337.7052	0.70516197	4429	Q9BTZ2	DHRS4	Dehydrogenase/reductase SDR family member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	19.721	19.728	3	0.0032954	16560	160511_QHF_FH_JSI11i_3	35.35	28.69			0.98624	0.96955	23.544	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2152	1.1452	NaN	1	0	Median	0.8004	0.82086	NaN	1	0	Median	74665000	38149000	36516000	0	0	0	0	0	0	37638000	17473000	20165000	37027000	20676000	16351000	29143	4429	27562	180945;180946	244586;244587	244586			2	
LAQDPFPLYPGEVLEK	1	Unmodified	1814.9455	0.94545182	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								4	2	2	1	94.023	93.606	2;3	1.3098E-05	85060	160511_QHF_FH_JSI11i_1	116.84	94.965			0.16671	0.18211	106.87	8	7	Median	0.58287	0.4837	119.2	3	2	Median	0.22503	0.26941	101.64	2	2	Median	0.12991	0.129	95.015	2	2	Median	0.048181	0.052951	NaN	1	1	Median	1067600000	942310000	125280000	208030000	167250000	40782000	294230000	260420000	33815000	384770000	344810000	39954000	180560000	169840000	10727000	29144	2573	27563	180947;180948;180949;180950;180951;180952;180953;180954;180955	244588;244589;244590;244591;244592;244593;244594;244595;244596;244597;244598	244588			11	
LAQEEESEAK	1	Unmodified	1132.5248	0.52479757	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.9245	8.5605	2	1.6731E-09	6447	160511_QHF_FH_JSI12i_1	128.91	88.637			2.4396	2.158	22.076	3	0	Median	2.5812	2.158	NaN	1	0	Median	2.4396	2.8528	NaN	1	0	Median	1.8963	1.845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	627510000	235220000	392290000	207380000	67715000	139670000	212060000	83674000	128380000	208070000	83829000	124240000	0	0	0	29145	150	27564	180956;180957;180958;180959	244599;244600;244601;244602	244600			4	
LAQEGIYTLYPFINSR	0	Unmodified	1883.9781	0.97814893	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.19	1	8	4						5	3	4	7	4	92.747	90.087	2;3	7.6309E-53	83259	160511_QHF_FH_JSI11i_2	273.72	258.84			1.1076	1.0921	26.114	17	6	Median	1.2207	1.0697	4.3531	3	1	Median	0.89742	1.0908	38.65	4	2	Median	1.1186	1.1129	31.825	6	2	Median	0.96872	1.0739	8.9228	4	1	Median	1862400000	874400000	988040000	329740000	132220000	197520000	375480000	188730000	186750000	698050000	297790000	400260000	459170000	255670000	203500000	29146	2282	27565	180960;180961;180962;180963;180964;180965;180966;180967;180968;180969;180970;180971;180972;180973;180974;180975;180976;180977	244603;244604;244605;244606;244607;244608;244609;244610;244611;244612;244613;244614;244615;244616;244617;244618;244619;244620;244621;244622;244623;244624;244625;244626;244627;244628;244629	244620			27	
LAQEGSEVNVIGIGTSVVTCPQQPSLGGVYK	1	Unmodified	3186.6231	0.62307841	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	95.514	95.215	3	1.3653E-06	86508	160511_QHF_FH_JSI12i_1	53.482	43.599			1.0296	1.0133	21.282	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89855	0.87171	NaN	1	0	Median	1.1797	1.1778	NaN	1	1	Median	32572000	11686000	20887000	0	0	0	0	0	0	16014000	5123500	10891000	16558000	6562100	9995900	29147	3167	27566	180978;180979	244630;244631;244632	244632			3	
LAQENMDLFK	1	Unmodified	1207.5907	0.59070906	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	57.202	56.48	2	0.00014307	51332	160511_QHF_FH_JSI12i_1	83.647	71.059			0.87775	0.91986	21.312	5	3	Median	0.86679	0.7358	32.559	2	1	Median	0.71775	0.8763	NaN	1	1	Median	1.0162	1.0015	NaN	1	1	Median	0.87775	0.91986	NaN	1	0	Median	949010000	474480000	474530000	246340000	120900000	125440000	277390000	154880000	122510000	225380000	97172000	128210000	199890000	101520000	98365000	29148	1421	27567	180980;180981;180982;180983;180984	244633;244634;244635;244636;244637;244638;244639	244635			7	
LAQEQGGGDNSLLVR	0	Unmodified	1555.7954	0.79543354	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.803	38.5	2	0.0030506	34730	160511_QHF_FH_JSI11i_1	57.164	33.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29149	5329	27568	180985	244640	244640			1	
LAQFDYGRK	1	Unmodified	1096.5665	0.56654322	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		26.338	25.279	2;3	0.0037888	20865	160511_QHF_FH_JSI10i_3	67.897	29.106			0.80495	0.94543	62.14	5	4	Median	1.7754	1.4297	24.302	2	2	Median	0.74398	0.86998	11.762	2	1	Median	0.34605	0.32358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	536010000	314000000	222010000	234970000	135530000	99438000	255760000	148110000	107650000	45276000	30358000	14918000	0	0	0	29150	2957;5035	27569	180986;180987;180988;180989;180990	244641;244642;244643;244644;244645	244642			5	
LAQFEPSQR	0	Unmodified	1074.5458	0.54580778	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.05	3	4	4				2	4		3	4	5	5	28.839	25.092	2	2.0077E-06	21759	160511_QHF_FH_JSI9i_2	128.61	111.22			1.003	0.97055	13.732	17	0	Median	1.2509	1.0612	9.0812	3	0	Plateau	0.72045	0.85335	4.9668	4	0	Median	1.0345	1.0217	10.281	5	0	Median	0.88787	0.98308	15.806	5	0	Median	4708000000	2463400000	2244600000	562800000	295120000	267680000	1121500000	630680000	490840000	1743400000	835810000	907610000	1280300000	701820000	578480000	29151	2265	27570	180991;180992;180993;180994;180995;180996;180997;180998;180999;181000;181001;181002;181003;181004;181005;181006;181007	244646;244647;244648;244649;244650;244651;244652;244653;244654;244655;244656;244657;244658;244659;244660;244661;244662;244663;244664;244665;244666;244667	244659			22	
LAQFVEHWK	1	Unmodified	1156.6029	0.60292873	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	44.3	44.121	2;3	0.00063049	38962	160511_QHF_FH_JSI11i_3	72.643	61.814			0.38762	0.38229	105.6	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29928	0.27909	NaN	1	1	Median	0.50202	0.52364	115.55	3	3	Median	676550000	386480000	290070000	0	0	0	0	0	0	159080000	114960000	44119000	517480000	271520000	245950000	29152	2470	27571	181008;181009;181010;181011;181012	244668;244669;244670;244671;244672	244668			5	
LAQGHTTVDELAR	0	Unmodified	1409.7263	0.72629134	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.37		7	3					3		2	2	5	4	27.877	25.189	2;3	1.5962E-05	21382	160511_QHF_FH_JSI11i_3	104.17	91.297			1.1515	1.1748	16.862	13	3	Median	1.5214	1.2773	38.915	2	2	Median	0.81299	1.0017	13.62	2	0	Median	1.1515	1.1471	7.9092	5	0	Median	1.2381	1.2855	9.618	4	1	Median	684340000	325400000	358940000	32269000	8855800	23414000	145140000	79527000	65615000	344190000	161100000	183090000	162740000	75924000	86821000	29153	2636	27572	181013;181014;181015;181016;181017;181018;181019;181020;181021;181022;181023;181024;181025	244673;244674;244675;244676;244677;244678;244679;244680;244681;244682;244683;244684;244685;244686;244687;244688;244689;244690;244691;244692	244676			20	
LAQGLTHLGK	1	Unmodified	1036.6029	0.60292873	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.57		5	8						2	5	3	3	4	28.053	26.101	2;3	0.00012854	22649	160511_QHF_FH_JSI9i_2	98.033	80.647			1.3935	1.3221	79.489	14	9	Median	2.0612	1.722	22.185	4	3	Median	0.9302	1.053	52.211	3	1	Median	2.8688	2.7221	62.358	3	1	Plateau	1.0909	1.1437	135.84	4	4	Median	6690500000	2879200000	3811300000	671240000	258390000	412850000	1035400000	556480000	478910000	914630000	252990000	661630000	4069200000	1811300000	2257900000	29154	2370	27573	181026;181027;181028;181029;181030;181031;181032;181033;181034;181035;181036;181037;181038;181039;181040	244693;244694;244695;244696;244697;244698;244699;244700;244701;244702;244703;244704;244705;244706;244707;244708	244700			16	
LAQIREEK	1	Unmodified	985.55564	0.55564418	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	no	no	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			5							2	2	1		10.893	10.355	2;3	0.030065	7959	160511_QHF_FH_JSI10i_3	32.633	9.2041			1.0404	0.96568	13.787	5	0	Median	1.2754	1.0294	0.25201	2	0	Median	0.67906	0.79773	8.8277	2	0	Median	1.0404	0.96568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	714170000	373510000	340660000	190440000	79721000	110720000	423780000	241160000	182620000	99946000	52632000	47314000	0	0	0	29155	2400	27574	181041;181042;181043;181044;181045	244709;244710	244710			2	
LAQKYHPDK	2	Acetyl (K)	1140.5928	0.59275797	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		62.74	51.679	2	0.034753	29220	160513_QHF_FH_JSI11Kac_4	56.729	41.067			0.11364	0.10421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11364	0.10421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1466600	1290900	175690	0	0	0	0	0	0	1466600	1290900	175690	0	0	0	29156	486	27575	181046	244711	244711			1	
LAQLEEAK	1	Unmodified	900.49165	0.49164694	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			1	3	3	2	23.577	20.332	2	0.0053137	12927	160513_QHF_FH_JSI11Kac_4	78.149	23.992			0.8111	0.80513	40.972	9	2	Median	1.0412	0.85937	NaN	1	0	Median	0.71221	1.0192	42.171	3	1	Plateau	0.8111	0.80513	30.671	3	0	Median	0.85284	0.92499	85.166	2	1	Median	3455400000	1907400000	1548000000	738040000	335380000	402670000	908080000	537870000	370210000	965690000	505890000	459790000	843620000	528270000	315350000	29157	1246	27576	181047;181048;181049;181050;181051;181052;181053;181054;181055	244712;244713;244714;244715;244716;244717;244718;244719	244715			8	
LAQLQVAYHQLFQEYDNHIK	1	Unmodified	2457.2441	0.24409346	5735	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.5	6.5			2						2	1	1	1	1	83.139	79.538	4	7.8974E-26	41465	160513_QHF_FH_JSI10Kac_6	149.53	128.33			1.0639	0.99001	7.552	4	0	Median	1.1577	0.97371	NaN	1	0	Median	0.77234	0.9145	NaN	1	0	Median	1.0832	1.0066	NaN	1	0	Median	1.0449	1.0963	NaN	1	0	Median	321280000	150300000	170980000	58778000	24045000	34733000	136230000	71375000	64857000	68209000	28130000	40079000	58058000	26748000	31310000	29158	5735	27577	181056;181057;181058;181059	244720;244721;244722	244722			3	
LAQMFSDMVLK	1	Unmodified	1281.6461	0.64611545	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	6.09	4	4	6					4	2	5	5	6	4	79.685	76.085	2	1.8366E-13	68813	160511_QHF_FH_JSI11i_2	152.28	111.25			0.89521	0.92142	33.25	19	5	Median	1.0257	0.87036	30.342	5	2	Median	0.81991	0.97206	6.6226	4	1	Median	0.91457	0.91461	52.067	6	2	Median	0.88429	0.93134	27.115	4	0	Median	3801600000	1864200000	1937400000	760750000	375010000	385750000	890750000	446560000	444190000	1338300000	657320000	680940000	811860000	385340000	426530000	29159	793	27578	181060;181061;181062;181063;181064;181065;181066;181067;181068;181069;181070;181071;181072;181073;181074;181075;181076;181077;181078;181079	244723;244724;244725;244726;244727;244728;244729;244730;244731;244732;244733;244734;244735;244736;244737;244738;244739;244740;244741;244742;244743;244744;244745;244746;244747;244748;244749;244750;244751;244752;244753;244754;244755;244756;244757;244758;244759;244760;244761;244762;244763	244751			41	
LAQMFSDMVLK	1	Oxidation (M)	1297.641	0.64103007	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2	0		2									1		1	64.134	63.061	2	0.0090107	54199	160511_QHF_FH_JSI12i_2	52.725	40.149			1.438	1.6758	9.2088	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2743	1.5701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6228	1.7885	NaN	1	0	Median	130290000	51219000	79074000	0	0	0	71323000	24449000	46874000	0	0	0	58970000	26770000	32200000	29160	793	27578	181080;181081	244764;244765	244764		309	2	
LAQMISDHNDADFEEK	1	Unmodified	1861.8152	0.81524228	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.694	7	11	4							5	5	5	7	43.372	42.633	2;3	9.2124E-16	38286	160511_QHF_FH_JSI10i_1	161.24	134.88			1.0177	1.1435	49.62	19	10	Median	1.2341	1.0301	39.923	4	2	Median	0.94518	1.1772	24.809	5	2	Median	0.82474	0.85476	72.332	5	2	Median	1.5209	1.6103	47.748	5	4	Median	2519700000	1290000000	1229700000	373320000	161080000	212250000	732900000	440000000	292900000	848090000	439760000	408330000	565350000	249140000	316200000	29161	2505	27579	181082;181083;181084;181085;181086;181087;181088;181089;181090;181091;181092;181093;181094;181095;181096;181097;181098;181099;181100;181101;181102;181103	244766;244767;244768;244769;244770;244771;244772;244773;244774;244775;244776;244777;244778;244779;244780;244781;244782;244783;244784;244785;244786;244787;244788;244789;244790;244791;244792;244793;244794;244795	244777			30	
LAQNPLFWK	1	Unmodified	1115.6128	0.61276513	2851	Q53FT3	C11orf73	Protein Hikeshi	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.107	66.811	2	0.038981	57693	160511_QHF_FH_JSI12i_3	46.426	35.668			3.0313	3.0797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0313	3.0797	NaN	1	1	Median	118910000	28068000	90839000	0	0	0	0	0	0	0	0	0	118910000	28068000	90839000	29162	2851	27580	181104	244796	244796			1	
LAQPVYETVQRPLDR	0	Unmodified	1783.9581	0.95808219	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			49.403	48.398	3	0.0049279	42313	160511_QHF_FH_JSI9i_2	36.77	19.691			1.2481	1.2846	2.3277	2	0	Median	1.4555	1.2637	NaN	1	0	Median	1.0703	1.306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77763000	35744000	42019000	42521000	17879000	24642000	35242000	17865000	17377000	0	0	0	0	0	0	29163	5100	27581	181105;181106	244797;244798	244797			2	
LAQPYVGVFLK	1	Unmodified	1233.7121	0.71214483	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	78.637	75.346	2	7.9219E-05	64818	160511_QHF_FH_JSI10i_3	90.657	84.486			1.0414	1.0221	15.944	12	0	Median	1.195	1.0162	10.626	3	0	Median	0.81831	0.9145	9.8104	3	0	Median	0.97146	0.97298	16.47	3	0	Plateau	0.9843	1.0309	18.985	3	0	Plateau	1364700000	677750000	686920000	303640000	147510000	156140000	317650000	177060000	140590000	376480000	171810000	204660000	366900000	181370000	185530000	29164	1459	27582	181107;181108;181109;181110;181111;181112;181113;181114;181115;181116;181117;181118	244799;244800;244801;244802;244803;244804;244805;244806;244807;244808;244809;244810;244811;244812;244813;244814;244815;244816;244817;244818;244819;244820;244821	244806			23	
LAQQIKQEVR	1	Acetyl (K)	1253.7092	0.70918471	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3			1	1	1	2	38.531	27.157	2	3.7287E-06	19154	160513_QHF_FH_JSI10Kac_4	121.6	92.516			0.87189	0.94364	14.595	5	0	Median	1.1704	0.95089	NaN	1	0	Median	0.7385	0.8851	NaN	1	0	Median	0.69687	0.68404	NaN	1	0	Median	0.89684	0.95997	2.4267	2	0	Median	214960000	119740000	95219000	11594000	5513500	6080000	66109000	37171000	28938000	56465000	31304000	25161000	80797000	45756000	35041000	29165	1047	27583	181119;181120;181121;181122;181123	244822;244823;244824;244825;244826;244827;244828;244829	244823	877		8	
LAQQISDEASR	0	Unmodified	1216.6048	0.60477922	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	22.269	18.767	2	2.1575E-09	16311	160511_QHF_FH_JSI12i_1	130.98	111.88			1.0299	1.1163	17.966	7	1	Median	0.979	0.79763	NaN	1	0	Median	0.83576	0.98187	23.418	2	0	Median	1.1764	1.162	11.806	2	1	Median	1.0882	1.1535	4.639	2	0	Median	753320000	392070000	361260000	135080000	69012000	66070000	206870000	111200000	95665000	213830000	101990000	111840000	197540000	109860000	87678000	29166	3921	27584	181124;181125;181126;181127;181128;181129;181130	244830;244831;244832;244833;244834;244835;244836;244837;244838;244839	244832			10	
LAQQMENRPSVQAALK	1	Unmodified	1782.9411	0.94105192	5605	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		38.16	37.082	2;3	0.0014505	32427	160511_QHF_FH_JSI9i_2	53.565	41.182			0.90933	0.86227	10.335	6	0	Median	0.98951	0.80289	15.279	3	0	Median	0.74763	0.89901	5.9387	2	0	Median	0.93428	0.86249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	745570000	398710000	346860000	426620000	232810000	193810000	280220000	145700000	134520000	38733000	20199000	18534000	0	0	0	29167	5605	27585	181131;181132;181133;181134;181135;181136	244840;244841;244842;244843;244844;244845;244846;244847;244848	244846			9	
LAQQPHQNQAK	1	Unmodified	1261.6527	0.65273247	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		9	6					3		4	4	5	5	5.2791	3.4648	2;3	1.6285E-13	2858	160511_QHF_FH_JSI11i_3	152.63	120.31			0.93873	0.99358	17.837	17	4	Median	1.331	1.1248	20.991	3	3	Median	0.8901	1.0694	11.284	4	1	Median	1.1243	1.0446	15.204	5	0	Median	0.73688	0.78049	20.415	5	0	Median	3239500000	1697000000	1542500000	813820000	394780000	419040000	683640000	368480000	315160000	903280000	442390000	460890000	838780000	491380000	347400000	29168	4337	27586	181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149;181150;181151;181152;181153;181154	244849;244850;244851;244852;244853;244854;244855;244856;244857;244858;244859;244860;244861;244862;244863;244864;244865;244866;244867	244850			19	
LAQQQAAAAAAAAAAASQQGSAK	1	Unmodified	2054.0505	0.050479026	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	53.819	53.155	2;3	5.3131E-17	48420	160511_QHF_FH_JSI12i_1	131.56	115.62			1.0187	1.062	8.4673	4	0	Linear	1.1519	0.92488	NaN	1	0	Median	0.7656	0.88919	NaN	1	0	Median	1.067	1.0536	NaN	1	0	Median	0.97255	1.0405	NaN	1	0	Median	1223700000	665670000	558050000	241980000	118430000	123550000	208990000	139210000	69779000	408010000	207850000	200160000	364740000	200180000	164560000	29169	4568	27587	181155;181156;181157;181158;181159	244868;244869;244870;244871;244872	244869			5	
LAQQQAALLMQQEER	0	Unmodified	1755.8938	0.89376737	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.627	8	5	1							3	4	3	4	53.565	52.786	2;3	3.3316E-65	45188	160511_QHF_FH_JSI12i_2	226.28	210.74			0.99097	1.0068	14.569	13	0	Median	1.3367	1.1147	7.1267	3	0	Plateau	0.83266	0.98934	25.402	4	0	Median	1.0012	0.99319	3.9959	3	0	Median	0.99097	1.0569	2.4654	3	0	Median	1674700000	840670000	834040000	346680000	156920000	189760000	459540000	231810000	227730000	484280000	255090000	229190000	384210000	196850000	187360000	29170	2412	27588	181160;181161;181162;181163;181164;181165;181166;181167;181168;181169;181170;181171;181172;181173	244873;244874;244875;244876;244877;244878;244879;244880;244881;244882;244883;244884;244885;244886;244887;244888;244889;244890;244891;244892;244893;244894;244895	244877			22	
LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSK	1	Unmodified	3265.6287	0.62870915	459	O60907	TBL1X	F-box-like/WD repeat-containing protein TBL1X	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.691	78.691	4	6.564E-17	70257	160511_QHF_FH_JSI11i_3	78.974	70.9			1.1847	1.1282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1847	1.1282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36801000	14892000	21910000	0	0	0	0	0	0	36801000	14892000	21910000	0	0	0	29171	459	27589	181174	244896	244896			1	
LAQQSQALQELISELDR	0	Unmodified	1941.0167	0.016719282	1160	P19474	TRIM21	E3 ubiquitin-protein ligase TRIM21	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	98.806	98.819	3	0.061573	85590	160511_QHF_FH_JSI12i_3	16.685	6.3085			1.0067	1.0161	2.222	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1198	1.056	NaN	1	0	Median	1.0067	1.0161	0	2	0	Median	409350000	138860000	270490000	0	0	0	0	0	0	65750000	20152000	45598000	343600000	118710000	224890000	29172	1160	27590	181175;181176;181177	244897	244897			1	
LAQQVCHAIANISDR	0	Unmodified	1694.8522	0.85223691	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							1	4			46.282	44.711	2;3	8.1165E-05	37347	160511_QHF_FH_JSI10i_3	92.528	79.901			1.223	1.4397	46.835	5	5	Median	2.0385	1.6821	NaN	1	1	Median	1.099	1.2731	50.83	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	223360000	109150000	114210000	32419000	10723000	21696000	190940000	98426000	92515000	0	0	0	0	0	0	29173	2605	27591	181178;181179;181180;181181;181182	244898;244899;244900;244901;244902	244900			5	
LAQQYYLVYQEPIPTAQLVQR	0	Unmodified	2520.3377	0.33765949	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	6.08	7	9						1	4	5	5	6	5	90.275	87.77	2;3	3.9764E-162	82824	160511_QHF_FH_JSI10i_1	296.04	271.85			1.062	1.1409	10.662	20	0	Median	1.5422	1.3365	5.1702	4	0	Median	0.96037	1.1373	8.9017	5	0	Median	1.1387	1.1094	11.087	6	0	Median	1.0311	1.087	6.1843	5	0	Median	3009000000	1412900000	1596000000	576060000	226900000	349160000	930390000	467550000	462840000	757960000	342410000	415550000	744570000	376090000	368480000	29174	1265	27592	181183;181184;181185;181186;181187;181188;181189;181190;181191;181192;181193;181194;181195;181196;181197;181198;181199;181200;181201;181202;181203	244903;244904;244905;244906;244907;244908;244909;244910;244911;244912;244913;244914;244915;244916;244917;244918;244919;244920;244921;244922;244923;244924;244925;244926;244927;244928;244929;244930;244931;244932;244933;244934;244935;244936;244937;244938;244939;244940;244941;244942	244921			40	
LAQSEYQLLADIIPEHHQK	1	Unmodified	2232.1539	0.15388147	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.896	80.783	4	0.004491	72031	160511_QHF_FH_JSI11i_3	44.089	32.238			0.83926	0.80313	10.931	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81215	0.74339	NaN	1	1	Median	0.86728	0.86767	NaN	1	0	Median	102080000	56878000	45205000	0	0	0	0	0	0	48901000	26469000	22432000	53182000	30409000	22773000	29175	5465	27593	181204;181205	244943;244944	244943			2	
LAQSHHVK	1	Unmodified	918.50355	0.50354903	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.06		3	14						2	6	8	4	1	3.5736	2.4264	2;3	0.00066914	1534	160511_QHF_FH_JSI9i_3	95.909	68.789			0.94987	0.97253	69.915	16	6	Median	0.93315	0.74506	39.917	4	1	Median	1.0073	1.2013	78.62	7	2	Median	0.8175	0.76617	99.223	4	3	Median	0.89574	0.95566	NaN	1	0	Median	3382300000	1628200000	1754100000	557510000	287800000	269710000	1094500000	664550000	429990000	1725300000	673430000	1051900000	4866000	2376100	2489900	29176	1205	27594	181206;181207;181208;181209;181210;181211;181212;181213;181214;181215;181216;181217;181218;181219;181220;181221;181222;181223;181224	244945;244946;244947;244948;244949;244950;244951;244952;244953;244954;244955;244956;244957;244958;244959;244960;244961;244962;244963;244964;244965;244966;244967	244962			23	
LAQSNGWGVMVSHR	0	Oxidation (M)	1556.7518	0.75179458	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.229								1	17	6	6	1	5	38.819	29.86	2;3	4.9783E-06	16521	160513_QHF_FH_JSI10Kac_6	102.9	97.92			1.0116	1.1373	11.865	18	0	Median	1.3833	1.1731	8.5228	6	0	Median	0.9491	1.1171	9.4129	6	0	Median	0.94729	0.89809	NaN	1	0	Median	0.98942	1.0625	12.122	5	0	Median	486900000	226300000	260600000	172220000	68333000	103890000	211420000	105210000	106220000	17665000	9880000	7784800	85587000	42877000	42710000	29177	1044	27595	181225;181226;181227;181228;181229;181230;181231;181232;181233;181234;181235;181236;181237;181238;181239;181240;181241;181242	244968;244969;244970;244971;244972;244973;244974;244975;244976;244977;244978;244979;244980;244981;244982;244983;244984;244985;244986;244987;244988;244989;244990;244991	244984		666	23	
LAQSNGWGVMVSHR	0	Unmodified	1540.7569	0.75687996	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									15	4	5	2	4	47.209	38.05	2;3	7.9986E-06	23692	160513_QHF_FH_JSI10Kac_6	115.04	71.721			0.98866	1.0273	13.737	12	4	Median	1.2236	1.0452	11.702	3	2	Median	0.99176	1.1496	19.049	4	2	Linear	0.94576	0.91897	NaN	1	0	Median	0.99998	1.0898	5.432	4	0	Median	313880000	169690000	144180000	65585000	32573000	33012000	170390000	93455000	76932000	16582000	10901000	5680700	61323000	32764000	28559000	29178	1044	27595	181243;181244;181245;181246;181247;181248;181249;181250;181251;181252;181253;181254;181255;181256;181257	244992;244993;244994;244995;244996;244997;244998;244999;245000;245001;245002;245003;245004;245005;245006	245003			15	
LAQSVQK	1	Unmodified	772.4443	0.44430282	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							2	1	1	2	7.8723	7.5763	2	0.006915	5067	160511_QHF_FH_JSI9i_1	89.369	29.728			1.1099	1.139	34.22	6	1	Median	1.2777	1.0723	17.351	2	0	Median	1.0749	1.2774	NaN	1	0	Median	0.59221	0.57668	NaN	1	1	Median	1.2417	1.2923	26.687	2	0	Median	1880800000	901010000	979830000	618470000	256050000	362420000	444640000	200890000	243750000	384730000	210350000	174370000	433000000	233720000	199280000	29179	5633	27596	181258;181259;181260;181261;181262;181263	245007;245008;245009	245008			3	
LAQTFSPSIDILK	1	Unmodified	1431.7973	0.79733102	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.178	81.054	2	0.0054274	71385	160511_QHF_FH_JSI11i_2	53.237	38.087			0.98278	1.0665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98278	1.0665	NaN	1	0	Median	12535000	6483900	6051400	0	0	0	0	0	0	0	0	0	12535000	6483900	6051400	29180	3470	27597	181264;181265	245010;245011	245011			2	
LAQTSDVNK	1	Unmodified	974.50327	0.50327426	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	9.3979	8.9589	2	0.00015092	6485	160511_QHF_FH_JSI9i_1	106.6	78.381			0.96279	1.0015	35.339	5	2	Median	1.2159	1.002	64.283	2	2	Median	1.0877	1.2615	NaN	1	0	Median	0.85211	0.83392	NaN	1	0	Median	0.96279	1.0015	NaN	1	0	Median	760990000	353370000	407620000	237240000	104230000	133010000	199090000	100210000	98887000	172260000	75964000	96295000	152400000	72962000	79435000	29181	3029	27598	181266;181267;181268;181269;181270	245012;245013;245014;245015;245016;245017;245018	245018			7	
LAQVQVQK	1	Unmodified	912.53927	0.53926584	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	19.521	19.017	2	0.0077371	15930	160511_QHF_FH_JSI9i_1	58.604	33.786			1.0446	1.0822	18.22	4	0	Median	1.3798	1.1119	NaN	1	0	Median	0.97648	1.1377	NaN	1	0	Median	1.1174	1.0534	NaN	1	0	Median	0.75151	0.76877	NaN	1	0	Median	276600000	127150000	149460000	60691000	26269000	34422000	87320000	43107000	44213000	63094000	24990000	38103000	65499000	32781000	32718000	29182	2175	27599	181271;181272;181273;181274	245019;245020;245021	245021			3	
LAQVSPELLLASVR	0	Unmodified	1494.877	0.87697832	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	95.088	94.812	2;3	0.00013795	83367	160511_QHF_FH_JSI9i_2	111.63	96.058			1.0419	0.99886	10.955	7	5	Median	1.1445	0.98706	0.97593	2	2	Median	0.83402	0.95631	21.194	2	1	Median	1.0765	1.0714	9.9146	2	1	Median	0.97029	1.0691	NaN	1	1	Median	364770000	185280000	179480000	114450000	56120000	58333000	78677000	46641000	32036000	112930000	51938000	60987000	58710000	30583000	28127000	29183	344	27600	181275;181276;181277;181278;181279;181280;181281	245022;245023;245024;245025;245026;245027;245028;245029	245025			8	
LAQYEPPQEEK	1	Unmodified	1330.6405	0.64049603	4264	Q99417	MYCBP	C-Myc-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	28.138	25.988	2	6.9001E-08	22399	160511_QHF_FH_JSI9i_1	125.75	112.71			0.93797	0.91237	5.9743	5	0	Median	1.043	0.86251	NaN	1	0	Median	0.72278	0.86012	NaN	1	0	Median	0.93797	0.92478	NaN	1	0	Median	0.90422	0.95275	6.125	2	0	Median	774000000	388950000	385050000	167790000	83177000	84614000	219450000	112120000	107330000	195050000	85895000	109160000	191710000	107760000	83950000	29184	4264	27601	181282;181283;181284;181285;181286	245030;245031;245032;245033;245034;245035;245036	245034			7	
LAQYESK	1	Unmodified	837.42323	0.42323303	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.29	4	2				1	1			1	2	2	3	10.164	8.069	2	0.009988	6768	160511_QHF_FH_JSI11i_1	76.774	5.4784			0.99935	1.0675	25.123	8	0	Median	1.9701	1.6347	NaN	1	0	Median	0.94991	1.1503	25.102	2	0	Median	1.2716	1.2648	11.379	2	0	Median	0.80127	0.85944	9.4361	3	0	Median	7553500000	3551200000	4002400000	1614400000	633160000	981240000	2114200000	1090400000	1023800000	2092600000	945710000	1146900000	1732400000	881880000	850500000	29185	1245	27602	181287;181288;181289;181290;181291;181292;181293;181294	245037;245038;245039;245040;245041;245042;245043	245037			7	
LAQYESKK	2	Unmodified	965.5182	0.51819605	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	3	2	6.7636	6.5523	2;3	0.00050394	3976	160511_QHF_FH_JSI12i_3	106.36	75.067			1.0137	1.0928	47.926	10	5	Median	1.0814	0.92698	21.607	2	1	Median	0.89727	1.1057	15.134	3	0	Median	0.4261	0.4011	76.462	3	3	Median	1.16	1.1852	5.1414	2	1	Median	7823800000	4822000000	3001800000	501040000	294990000	206050000	627200000	315270000	311930000	2399900000	1693200000	706690000	4295700000	2518600000	1777100000	29186	1245	27603	181295;181296;181297;181298;181299;181300;181301;181302;181303;181304	245044;245045;245046;245047;245048;245049;245050;245051;245052;245053;245054;245055	245053			12	
LAREEPDIYQIAK	1	Unmodified	1544.8199	0.81985738	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	46.636	46.515	3	0.0049272	41043	160511_QHF_FH_JSI11i_3	43.03	30.972			0.9677	0.98072	0.068815	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0591	0.98024	NaN	1	0	Median	0.88419	0.9812	NaN	1	0	Median	157910000	84662000	73249000	0	0	0	0	0	0	86674000	40544000	46130000	71237000	44118000	27119000	29187	2253	27604	181305;181306	245056	245056			1	
LASAAYPDPSK	1	Unmodified	1118.5608	0.56078914	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	29.987	26.776	2	0.00060072	23694	160511_QHF_FH_JSI10i_1	75.509	52.155			1.0762	1.0991	38.128	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5073	1.4669	48.499	2	1	Median	1.026	1.0991	NaN	1	1	Median	729430000	262140000	467280000	0	0	0	0	0	0	356680000	130590000	226090000	372740000	131550000	241190000	29188	1823	27605	181307;181308;181309;181310	245057;245058;245059;245060;245061	245061			5	
LASADVNGK	1	Unmodified	873.4556	0.45559579	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	11.5	3.1123	2	0.024885	4385	160513_QHF_FH_JSI12Kac_4	58.981	20.779			0.013193	0.015107	14.916	2	2	Median	NaN	NaN	NaN	0	0	Median	0.013979	0.016787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.012452	0.013594	NaN	1	1	Median	134640000	133980000	656830	0	0	0	40063000	39805000	258830	46603000	46603000	0	47975000	47577000	397990	29189	4564	27606	181311;181312;181313	245062;245063;245064	245064			3	
LASAFTEEQAVLYNQR	0	Unmodified	1838.9163	0.91627696	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	2	2	66.371	65.473	2;3	5.4909E-184	57166	160511_QHF_FH_JSI11i_2	322.24	297.98			0.99286	1.0213	19.464	7	3	Median	1.0158	0.83773	NaN	1	0	Median	0.85436	1.0448	22.082	2	1	Median	1.1939	1.2106	2.4249	2	0	Median	0.81792	0.88566	20.147	2	2	Median	467210000	269730000	197480000	25786000	13417000	12369000	131020000	77170000	53854000	238560000	136390000	102170000	71840000	42754000	29086000	29190	5295	27607	181314;181315;181316;181317;181318;181319;181320;181321	245065;245066;245067;245068;245069;245070;245071;245072;245073;245074;245075	245071			10	
LASAFTEEQAVLYNQRVEEISPNIR	0	Unmodified	2876.4668	0.46683576	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			82.87	82.203	3	4.0261E-06	73190	160511_QHF_FH_JSI10i_2	57.293	50.099			1.1853	1.4196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1853	1.4196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26157000	10025000	16132000	0	0	0	26157000	10025000	16132000	0	0	0	0	0	0	29191	5295	27608	181322	245076;245077	245077			2	
LASALAGLIAK	1	Unmodified	1026.6437	0.64373091	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.457	70.158	2	0.0032265	60787	160511_QHF_FH_JSI12i_3	69.375	53.172			4.7656	4.8796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.7656	4.8796	NaN	1	1	Median	25817000	6493100	19324000	0	0	0	0	0	0	0	0	0	25817000	6493100	19324000	29192	2199	27609	181323	245078	245078			1	
LASALAHNPNSGLHTINLAGNPLEDR	0	Unmodified	2694.3838	0.38377483	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							3	2	2		78.214	77.399	3;4	1.1161E-17	55213	160511_QHF_FH_JSI9i_3	106.51	103.35			0.96821	0.9582	8.189	7	0	Median	1.2792	1.0261	4.8639	3	0	Plateau	0.76343	0.91369	13.629	2	0	Median	0.95246	0.92356	5.206	2	0	Median	NaN	NaN	NaN	0	0	Median	784200000	373920000	410280000	354040000	139830000	214210000	277250000	160840000	116410000	152900000	73247000	79657000	0	0	0	29193	3003	27610	181324;181325;181326;181327;181328;181329;181330	245079;245080;245081;245082;245083;245084;245085	245081			7	
LASALAPSIYEHEDIK	1	Unmodified	1755.9043	0.90431529	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	57.829	56.917	2	4.9658E-11	49332	160511_QHF_FH_JSI11i_2	103.88	79.027			1.2121	1.2604	8.3066	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4094	1.3366	NaN	1	1	Median	1.0424	1.1885	NaN	1	1	Median	38877000	21914000	16963000	0	0	0	13221000	13221000	0	15644000	5862800	9781500	10013000	2830900	7181600	29194	1409	27611	181331;181332;181333;181334;181335;181336	245086;245087;245088;245089;245090;245091;245092	245090			7	
LASALAPSIYEHEDIKK	2	Unmodified	1883.9993	0.9992783	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1	2	3	2	2	50.775	49.005	2;3;4	6.2313E-07	43171	160511_QHF_FH_JSI9i_2	117.4	111.56			0.93481	0.97835	46.208	8	4	Median	1.6388	1.4192	57.663	2	1	Median	0.82096	1.0139	24.283	3	1	Median	0.84853	0.80271	NaN	1	0	Median	0.94427	0.93239	86.104	2	2	Median	1265100000	661620000	603460000	149550000	56478000	93068000	417330000	248350000	168980000	255640000	146880000	108760000	442560000	209910000	232650000	29195	1409	27612	181337;181338;181339;181340;181341;181342;181343;181344;181345	245093;245094;245095;245096;245097;245098;245099;245100;245101;245102;245103;245104;245105	245098			13	
LASALDLPLLR	0	Unmodified	1180.718	0.71795849	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.441	90.907	2	3.183E-07	79909	160511_QHF_FH_JSI11i_2	119.75	91.348			0.99985	1.0098	5.4014	4	0	Median	1.1398	1.0037	NaN	1	0	Median	0.73967	0.91036	NaN	1	0	Median	1.0392	1.0159	NaN	1	0	Median	0.96196	1.0203	NaN	1	0	Median	116500000	65600000	50902000	16776000	9256000	7520200	33852000	22151000	11701000	41899000	23163000	18736000	23976000	11031000	12945000	29196	2302	27613	181346;181347;181348;181349	245106;245107;245108;245109;245110;245111;245112;245113	245111			8	
LASAYGAR	0	Unmodified	807.4239	0.42390173	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	11.8	5.63		1						3		1	1	1	1	15.283	8.1309	2	0.024493	6605	160513_QHF_FH_JSI11Kac_5	53.554	19.816			0.84773	0.92869	13.091	4	1	Median	0.84473	0.74206	NaN	1	1	Median	0.80852	0.92451	NaN	1	0	Median	1.0038	1.0054	NaN	1	0	Median	0.85075	0.93289	NaN	1	0	Median	112360000	63629000	48732000	99596000	56649000	42947000	2211100	1386000	825150	7812800	3919600	3893200	2741400	1674300	1067100	29197	2271	27614	181350;181351;181352;181353	245114;245115;245116	245116			3	
LASDAGIFFTR	0	Unmodified	1196.619	0.61897272	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.909	65.615	2	0.0026828	56627	160511_QHF_FH_JSI12i_3	56.729	47.141			1.0641	1.091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.091	NaN	1	0	Median	97970000	47651000	50319000	0	0	0	0	0	0	0	0	0	97970000	47651000	50319000	29198	4944	27615	181354	245117	245117			1	
LASDGATWADIFK	1	Unmodified	1393.6878	0.68778057	3669	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	85.921	85.042	2	6.2132E-05	74888	160511_QHF_FH_JSI11i_2	74.962	52.222			0.5896	0.66841	39.382	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.471	1.4663	NaN	1	1	Median	0.72036	0.79377	24.309	2	2	Median	120030000	69906000	50128000	0	0	0	0	0	0	30874000	12748000	18125000	89161000	57158000	32003000	29199	3669	27616	181355;181356;181357;181358	245118;245119;245120;245121	245121			4	
LASDLLEWIR	0	Unmodified	1214.6659	0.66592292	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	96.745	96.583	2	3.6689E-11	83277	160511_QHF_FH_JSI12i_2	149.72	108.69			0.96269	1.0203	49.353	6	2	Median	0.53617	0.47225	NaN	1	0	Median	0.51118	0.63737	NaN	1	0	Median	1.6221	1.5807	9.2624	2	1	Median	0.96269	1.0203	18.285	2	1	Median	684980000	352020000	332960000	127700000	93304000	34398000	88307000	55990000	32317000	240800000	93947000	146850000	228170000	108780000	119390000	29200	361;1021	27617	181359;181360;181361;181362;181363;181364	245122;245123;245124;245125;245126;245127;245128;245129;245130	245123			9	
LASEEPPDDEEALATIR	0	Unmodified	1854.8847	0.88470206	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	59.416	58.767	2;3	1.6746E-15	53548	160511_QHF_FH_JSI12i_1	201.04	175.7			1.253	1.3239	15.378	4	0	Median	1.2635	1.0507	NaN	1	0	Median	1.2425	1.4666	NaN	1	0	Median	1.4625	1.4268	NaN	1	0	Median	1.1714	1.2285	NaN	1	0	Median	875830000	389380000	486440000	142520000	50160000	92360000	109670000	54491000	55178000	170670000	63650000	107020000	452970000	221080000	231880000	29201	5227	27618	181365;181366;181367;181368;181369	245131;245132;245133;245134	245132			3	
LASEILMQNWDAAMEDLTR	0	Unmodified	2206.0398	0.039839264	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.05	101.94	2	1.4495E-117	89704	160511_QHF_FH_JSI11i_2	270.07	246.85			1.3748	1.396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3748	1.396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	272190000	129490000	142700000	0	0	0	0	0	0	272190000	129490000	142700000	0	0	0	29202	1909	27619	181370	245135	245135			1	
LASEPQDPAAVSLPTSSVPETR	0	Unmodified	2251.1332	0.1332056	3084	Q6NZ67;Q6P582	MZT2B;MZT2A	Mitotic-spindle organizing protein 2B;Mitotic-spindle organizing protein 2A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	64.205	63.641	2;3	5.631E-14	57777	160511_QHF_FH_JSI11i_1	156.49	135.65			1.3503	1.3875	29.975	7	3	Median	2.2485	1.8081	NaN	1	0	Median	1.2045	1.3757	54.445	2	1	Median	1.313	1.2732	21.044	2	1	Median	1.1364	1.1632	24.935	2	1	Median	242610000	111410000	131200000	19947000	8088400	11859000	68816000	35515000	33301000	78632000	37135000	41497000	75215000	30674000	44540000	29203	3084	27620	181371;181372;181373;181374;181375;181376;181377	245136;245137;245138;245139;245140;245141	245137			6	
LASEYLTPEEMVTFK	1	Unmodified	1756.8593	0.85933893	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		85.744	85.148	2	2.405E-07	77648	160511_QHF_FH_JSI11i_1	88.441	54.062			1.1614	1.0223	14.171	2	2	Median	1.1566	0.92483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1664	1.13	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29932000	12573000	17359000	11333000	4031500	7301200	0	0	0	18600000	8541800	10058000	0	0	0	29204	318	27621	181378;181379;181380	245142;245143;245144	245143			3	
LASEYNWGGPESSDK	1	Unmodified	1638.7162	0.71618016	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.77	44.1	2	6.8113E-05	39093	160511_QHF_FH_JSI9i_1	115.14	101.54			5.1409	5.7498	93.431	4	4	Median	1.242	1.0079	NaN	1	1	Median	5.3567	6.3587	NaN	1	1	Median	7.959	7.7367	NaN	1	1	Median	4.9338	5.1992	NaN	1	1	Median	801660000	136920000	664740000	82305000	27054000	55250000	228550000	29221000	199330000	267650000	41178000	226470000	223170000	39468000	183700000	29205	4157	27622	181381;181382;181383;181384	245145;245146;245147;245148	245148			4	
LASFFLSR	0	Unmodified	939.5178	0.51780212	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	15.8	0.4								1	4	2	1	1	1	72.98	63.86	2	0.045296	35029	160513_QHF_FH_JSI10Kac_6	45.335	23.099			1.0152	1.1237	15.876	5	0	Median	1.3535	1.1875	7.7992	2	0	Median	1.0152	1.2027	NaN	1	0	Median	0.88673	0.84453	NaN	1	0	Median	0.94428	1.0081	NaN	1	0	Median	215360000	106640000	108720000	47208000	17912000	29296000	100230000	53630000	46597000	49871000	26225000	23646000	18049000	8871500	9177600	29206	3483	27623	181385;181386;181387;181388;181389	245149	245149			1	
LASFSPSPPSPYPTTVGPVESSGLR	0	Unmodified	2529.2751	0.27511881	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.487	79.861	3	3.9217E-05	70187	160511_QHF_FH_JSI11i_2	51.827	45.267			1.4524	1.4072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4524	1.4072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17512000	6995400	10517000	0	0	0	0	0	0	17512000	6995400	10517000	0	0	0	29207	4244	27624	181390	245150	245150			1	
LASFYEAAIPEMESAIK	1	Unmodified	1868.923	0.92300182	4660	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	97.656	97.413	2	7.2135E-05	83911	160511_QHF_FH_JSI12i_2	78.692	65.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8806000	6363000	2443000	0	0	0	6363000	6363000	0	0	0	0	2443000	0	2443000	29208	4660	27625	181391;181392;181393	245151;245152;245153	245152			3	
LASFYEAAIPEMESAIKK	2	Unmodified	1997.018	0.017964835	4660	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.96	88.849	3	0.044389	77148	160511_QHF_FH_JSI12i_3	26.808	17.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10601000	0	10601000	0	0	0	0	0	0	0	0	0	10601000	0	10601000	29209	4660	27626	181394	245154	245154			1	
LASFYER	0	Unmodified	884.43922	0.43921744	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	31.441	30.728	2	0.038047	26548	160511_QHF_FH_JSI11i_3	48.346	26.644			1.2901	1.3256	9.7029	4	0	Median	1.7146	1.3918	NaN	1	0	Median	1.221	1.425	NaN	1	0	Median	1.3632	1.2625	NaN	1	0	Median	1.1324	1.1533	NaN	1	0	Median	876840000	471660000	405180000	26358000	7176500	19181000	57521000	25556000	31965000	378360000	212180000	166180000	414600000	226750000	187850000	29210	1479	27627	181395;181396;181397;181398	245155	245155			1	
LASGEHIAAFCLTEPASGSDAASIR	0	Unmodified	2530.2122	0.21220098	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	67.857	67.485	3	9.8493E-12	60016	160511_QHF_FH_JSI11i_3	96.723	96.67			1.0776	1.0349	4.0413	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.83809	1.0349	NaN	1	1	Median	1.0776	0.99647	NaN	1	0	Median	1.0378	1.0803	NaN	1	0	Median	166030000	89188000	76841000	0	0	0	29141000	18606000	10535000	87638000	45655000	41983000	49249000	24927000	24322000	29211	4777	27628	181399;181400;181401;181402	245156;245157;245158;245159;245160;245161	245156			6	
LASGVEGSDIPDDGK	1	Unmodified	1458.6838	0.6838174	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.647	35.041	2	3.1058E-10	31460	160511_QHF_FH_JSI11i_1	152.47	131.09			0.90367	0.85621	18.296	4	0	Median	0.88855	0.73001	NaN	1	0	Median	0.91904	1.0804	NaN	1	0	Median	0.98273	0.95144	NaN	1	0	Median	0.7362	0.77052	NaN	1	0	Median	529460000	281480000	247980000	109110000	57793000	51313000	134800000	65817000	68988000	161330000	87033000	74295000	124220000	70838000	53386000	29212	721	27629	181403;181404;181405;181406	245162;245163;245164;245165;245166;245167;245168;245169	245163			8	
LASHIFVK	1	Unmodified	913.53854	0.53853756	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	2	1	1	1	33.151	28.885	3	0.0030211	16286	160513_QHF_FH_JSI11Kac_6	59.245	48.372			1.1835	1.0398	21.579	5	0	Median	1.1418	0.94111	14.104	2	0	Median	0.64652	0.75067	NaN	1	0	Median	1.1835	1.1485	NaN	1	0	Median	1.2441	1.2717	NaN	1	0	Median	534620000	273840000	260780000	147310000	75555000	71751000	123190000	72261000	50925000	8350200	4181300	4169000	255780000	121840000	133940000	29213	2253	27630	181407;181408;181409;181410;181411	245170;245171;245172;245173;245174	245171			5	
LASHLNLAMCHLK	1	Oxidation (M)	1522.7748	0.77483821	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	3	2	2	40.369	35.305	3;4	2.9606E-05	29527	160511_QHF_FH_JSI10i_3	91.858	80.244			1.016	0.98024	31.561	10	0	Median	1.0019	0.81496	31.492	3	0	Plateau	0.56042	0.63763	30.03	3	0	Median	0.89813	0.84899	15.515	2	0	Median	1.1656	1.2105	25.023	2	0	Median	699880000	382090000	317790000	81536000	40552000	40984000	229400000	136150000	93256000	157390000	88696000	68698000	231550000	116700000	114850000	29214	2193	27631	181412;181413;181414;181415;181416;181417;181418;181419;181420;181421	245175;245176;245177;245178;245179;245180;245181;245182;245183;245184	245178		1835	10	
LASHLNLAMCHLK	1	Unmodified	1506.7799	0.77992359	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	6.43		1	12						9	5	8	5	4	49.376	44.994	2;3;4	9.8242E-09	24512	160513_QHF_FH_JSI10Kac_6	111.39	98.51			1.0685	1.0339	34.135	21	7	Median	1.1585	0.99223	24.567	5	2	Median	0.86159	0.97712	44.182	8	3	Median	0.95599	0.91187	14.176	4	0	Median	1.1751	1.2229	31.119	4	2	Median	4715500000	2248100000	2467400000	886580000	342450000	544130000	1305800000	665690000	640140000	1162600000	602890000	559690000	1360500000	637100000	723450000	29215	2193	27631	181422;181423;181424;181425;181426;181427;181428;181429;181430;181431;181432;181433;181434;181435;181436;181437;181438;181439;181440;181441;181442;181443	245185;245186;245187;245188;245189;245190;245191;245192;245193;245194;245195;245196;245197;245198;245199;245200;245201;245202;245203;245204;245205;245206;245207;245208;245209;245210;245211;245212;245213;245214;245215;245216;245217;245218;245219;245220;245221	245218			36	
LASHMVMKDK	2	Acetyl (K)	1200.5995	0.59949961	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		33.534	24.209	3	0.025773	13668	160513_QHF_FH_JSI11Kac_6	42.095	29.882			0.03291	0.032935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.03291	0.032935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4304900	4161000	143920	0	0	0	0	0	0	4304900	4161000	143920	0	0	0	29216	4360	27632	181444	245222	245222	3142		1	
LASHWDLPMLSAGALAAGFQHK	1	Unmodified	2320.1787	0.17865643	1115	P17342	NPR3	Atrial natriuretic peptide receptor 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.084	99.104	4	0.0026319	86040	160511_QHF_FH_JSI12i_3	39.387	32.111			0.98375	0.97922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98375	0.97922	NaN	1	1	Median	27987000	14920000	13066000	0	0	0	0	0	0	0	0	0	27987000	14920000	13066000	29217	1115	27633	181445	245223	245223			1	
LASIDEK	1	Unmodified	774.41233	0.41233399	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	15.73	15.202	2	0.038047	12439	160511_QHF_FH_JSI9i_1	48.346	3.6538			0.85875	0.88019	14.718	3	0	Plateau	1.4336	1.171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97364	0.95406	NaN	1	0	Median	0.85875	0.88019	NaN	1	0	Median	457440000	220290000	237140000	130220000	52626000	77596000	0	0	0	139930000	73213000	66720000	187280000	94455000	92826000	29218	2261	27634	181446;181447;181448	245224	245224			1	
LASILAFILQLFK	1	Unmodified	1475.9116	0.91157292	3184	Q6ZRQ5	MMS22L	Protein MMS22-like	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			105.4	99.678	2;3	8.6834E-28	59039	160513_QHF_FH_JSI10Kac_6	204.52	167.41			0.097477	0.1132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.097477	0.1132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86733000	80328000	6405700	0	0	0	86733000	80328000	6405700	0	0	0	0	0	0	29219	3184	27635	181449;181450;181451	245225;245226;245227	245225			3	
LASILTSAAR	0	Unmodified	1001.5869	0.58694431	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							3	2	2	1	44.499	43.658	2	5.1307E-06	37245	160511_QHF_FH_JSI12i_3	109.11	64.663			0.8791	0.90003	15.904	7	1	Median	1.0377	0.864	28.681	2	1	Median	0.91309	1.0689	11.254	2	0	Median	0.89475	0.88233	2.5056	2	0	Median	0.8791	0.90003	NaN	1	0	Median	1163400000	622100000	541280000	321370000	165050000	156310000	309520000	160280000	149240000	323980000	181990000	141990000	208510000	114770000	93739000	29220	2346	27636	181452;181453;181454;181455;181456;181457;181458;181459	245228;245229;245230;245231;245232;245233;245234;245235;245236;245237;245238;245239;245240;245241	245241			14	
LASIVEQVSVLQNQGR	0	Unmodified	1739.953	0.95299681	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	4	3	4	75.297	74.505	2;3	1.876E-116	66594	160511_QHF_FH_JSI11i_3	273.04	235.7			0.9105	0.90707	32.589	13	9	Median	0.89332	0.75434	36.571	2	2	Median	0.84222	0.98954	30.358	4	2	Median	0.93743	0.8755	37.346	3	2	Median	0.99011	0.98289	41.141	4	3	Median	851000000	486730000	364260000	151010000	97003000	54006000	253700000	152260000	101450000	193040000	112860000	80181000	253240000	124610000	128630000	29221	1837	27637	181460;181461;181462;181463;181464;181465;181466;181467;181468;181469;181470;181471;181472	245242;245243;245244;245245;245246;245247;245248;245249;245250;245251;245252;245253;245254;245255;245256;245257	245243			15	
LASIYAAQNR	0	Unmodified	1105.588	0.58800695	3039	Q6DKK2	TTC19	Tetratricopeptide repeat protein 19, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.976	27.931	2	0.013111	23407	160511_QHF_FH_JSI12i_3	44.349	22.112			0.96463	0.98788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96463	0.98788	NaN	1	0	Median	15632000	9346100	6286400	0	0	0	0	0	0	0	0	0	15632000	9346100	6286400	29222	3039	27638	181473	245258	245258			1	
LASKYLHVGYIVPPAPEK	2	Acetyl (K)	2023.1142	0.11424848	444	O60749	SNX2	Sorting nexin-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.206	68.888	3	0.0013272	37675	160513_QHF_FH_JSI11Kac_6	72.145	57.055			0.17074	0.16497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17074	0.16497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22261000	21070000	1191000	0	0	0	0	0	0	22261000	21070000	1191000	0	0	0	29223	444	27639	181474	245259	245259	227		1	
LASLEELK	1	Unmodified	901.51205	0.51204804	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	3	3	1	45.126	44.438	2	0.0018212	40444	160511_QHF_FH_JSI12i_1	84.743	11.483			0.84642	0.90204	36.187	8	5	Median	0.79826	0.65399	NaN	1	0	Median	0.77631	0.92465	29.905	3	2	Median	0.89748	0.87999	51.492	3	3	Median	1.1045	1.1491	NaN	1	0	Median	1603300000	811830000	791520000	74833000	42378000	32455000	659100000	354510000	304580000	749980000	361030000	388950000	119440000	53902000	65534000	29224	1085	27640	181475;181476;181477;181478;181479;181480;181481;181482	245260;245261;245262;245263;245264;245265;245266;245267;245268	245263			9	
LASLEELKR	1	Acetyl (K)	1099.6237	0.62372375	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		66.485	55.569	2	0.053049	30022	160513_QHF_FH_JSI11Kac_5	62.823	39.394			0.63127	0.62757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63127	0.62757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18323000	12028000	6295000	0	0	0	0	0	0	18323000	12028000	6295000	0	0	0	29225	1085	27641	181483	245269	245269			1	
LASLFGLDQAAAGHGNEFFQYTAPK	1	Unmodified	2652.2973	0.29725124	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	96.775	96.618	3	4.3395E-29	85993	160511_QHF_FH_JSI11i_3	164.79	153.89			1.17	0.74635	22.738	5	0	Plateau	0.84148	0.73668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89831	0.8695	21.597	2	0	Median	0.88206	0.93382	35.016	2	0	Median	421570000	229300000	192260000	32228000	15899000	16329000	0	0	0	114110000	54435000	59676000	275230000	158970000	116260000	29226	2938	27642	181484;181485;181486;181487;181488	245270;245271;245272;245273;245274	245271			5	
LASLFPALFSR	0	Unmodified	1220.6917	0.69174374	5449	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			97.392	95.36	2	0.0033593	83510	160511_QHF_FH_JSI10i_3	55.908	36.122			0.61656	0.73221	38.419	3	1	Median	1.0334	0.87407	NaN	1	1	Median	0.46823	0.55367	39.526	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72911000	45881000	27030000	11822000	6565300	5257000	61089000	39315000	21773000	0	0	0	0	0	0	29227	5449	27643	181489;181490;181491	245275;245276;245277	245275			2	
LASLGLK	1	Unmodified	700.44833	0.44832557	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	4.71	5	5	4						2	3	5	6	2	40.541	38.788	2	0.0097624	34854	160511_QHF_FH_JSI10i_3	77.748	0			1.0152	1.0217	14.403	16	0	Median	1.0033	0.87116	10.903	3	0	Median	0.84829	1.0116	11.952	5	0	Median	1.0818	1.038	15.215	6	0	Median	1.1452	1.1679	17.508	2	0	Median	6724000000	3263500000	3460500000	1094600000	500850000	593750000	3128100000	1581600000	1546500000	2274600000	1074900000	1199700000	226610000	106090000	120510000	29228	4114	27644	181492;181493;181494;181495;181496;181497;181498;181499;181500;181501;181502;181503;181504;181505;181506;181507	245278;245279;245280;245281;245282;245283;245284;245285;245286;245287;245288;245289;245290;245291;245292;245293;245294	245281			17	
LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR	0	Oxidation (M)	4219.0386	0.038617071	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			85.017	79.35	4	9.7964E-279	44423	160513_QHF_FH_JSI10Kac_6	319.35	305.29			0.85511	0.99588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85511	0.99588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116900000	57044000	59857000	0	0	0	116900000	57044000	59857000	0	0	0	0	0	0	29229	1556	27645	181508	245295	245295		1224	1	
LASLQQENK	1	Unmodified	1029.5455	0.54547343	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1.2	0.4	4	1								2	1	1	1	15.343	14.884	2	5.6487E-06	12654	160511_QHF_FH_JSI12i_1	130.56	87.438			1.358	1.2802	10.092	4	0	Linear	1.8176	1.503	NaN	1	0	Median	1.1045	1.2922	NaN	1	0	Median	1.2622	1.2375	NaN	1	0	Median	1.4611	1.5011	NaN	1	0	Median	709400000	284490000	424900000	120320000	48044000	72272000	195300000	95456000	99848000	205260000	67525000	137740000	188510000	73469000	115040000	29230	2727	27646	181509;181510;181511;181512;181513	245296;245297;245298	245296			3	
LASNALQEPSSFR	0	Unmodified	1418.7154	0.7153923	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	46.101	45.597	2	3.1653E-05	39312	160511_QHF_FH_JSI11i_2	81.525	58.883			1.2811	1.3185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2811	1.3185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23031000	10399000	12632000	0	0	0	0	0	0	23031000	10399000	12632000	0	0	0	29231	4750	27647	181514;181515;181516	245299;245300;245301	245301			3	
LASPMKPVPGTPPSSK	2	Unmodified	1592.8596	0.8596137	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	35.98	35.834	3	0.012272	30411	160511_QHF_FH_JSI12i_3	46.156	30.77			0.63092	0.64521	60.835	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63092	0.64521	60.835	2	2	Median	117320000	67992000	49328000	0	0	0	0	0	0	0	0	0	117320000	67992000	49328000	29232	2694	27648	181517;181518	245302;245303	245302			2	
LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR	0	Unmodified	3557.6791	0.67914932	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.014	74.832	3	3.3502E-06	67858	160511_QHF_FH_JSI10i_1	51.544	49.379			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29233	2380	27649	181519	245304	245304			1	
LASQADSTEQVDDTILT	0	Unmodified	1805.8531	0.85306758	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	62.125	61.458	2	1.3146E-10	55762	160511_QHF_FH_JSI12i_1	135.6	119.46			1.1818	1.1137	42.134	6	6	Median	1.294	1.0685	1.0212	2	2	Median	1.0342	1.2234	8.4588	2	2	Median	0.94348	0.91418	NaN	1	1	Median	2.8336	2.9518	NaN	1	1	Median	615100000	247450000	367650000	233040000	88346000	144700000	117940000	60775000	57167000	97579000	43550000	54029000	166540000	54777000	111760000	29234	3860	27650	181520;181521;181522;181523;181524;181525	245305;245306;245307;245308;245309;245310	245306			6	
LASQANIAQVLAELK	1	Unmodified	1567.8934	0.89335667	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	2.86	5	9	9						1	4	5	8	7	98.566	98.435	2;3	2.8907E-18	85080	160511_QHF_FH_JSI12i_3	210.14	180.4			1.0272	1.0073	24.107	22	13	Median	1.2219	1.0299	14.687	4	2	Median	0.97776	1.1169	17.932	5	2	Median	1.2241	1.1774	35.909	6	4	Median	0.89631	0.94773	20.56	7	5	Median	3744400000	1706000000	2038400000	409820000	173270000	236550000	384000000	214190000	169810000	1011500000	444120000	567420000	1939100000	874420000	1064600000	29235	2046;2296	27651	181526;181527;181528;181529;181530;181531;181532;181533;181534;181535;181536;181537;181538;181539;181540;181541;181542;181543;181544;181545;181546;181547;181548;181549	245311;245312;245313;245314;245315;245316;245317;245318;245319;245320;245321;245322;245323;245324;245325;245326;245327;245328;245329;245330;245331;245332;245333;245334;245335;245336;245337;245338;245339;245340;245341;245342;245343;245344;245345;245346;245347;245348;245349;245350;245351;245352;245353;245354	245352			44	
LASQGDSISSQLGPIHPPPR	0	Unmodified	2056.0702	0.070151836	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	3.37		6	6					1		2	3	6	2	55.562	53.975	2;3	3.9707E-68	47634	160511_QHF_FH_JSI10i_2	203.81	179.78			1.0638	1.1774	25.115	11	4	Median	1.4158	1.2145	NaN	1	0	Median	0.98719	1.2112	27.641	3	1	Median	1.0638	0.99498	28.734	5	2	Median	0.99184	1.05	24.228	2	1	Median	3239000000	1638300000	1600600000	461150000	205820000	255320000	791340000	394180000	397160000	1208900000	638860000	570090000	777520000	399490000	378030000	29236	3911	27652	181550;181551;181552;181553;181554;181555;181556;181557;181558;181559;181560;181561;181562	245355;245356;245357;245358;245359;245360;245361;245362;245363;245364;245365;245366;245367;245368;245369;245370;245371;245372;245373;245374;245375;245376;245377;245378	245372			24	
LASQNFSYGVTEMYK	1	Unmodified	1736.808	0.80797206	4813	Q9H9P8	L2HGDH	L-2-hydroxyglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		64.978	64.528	2	8.6076E-07	56236	160511_QHF_FH_JSI11i_2	141.38	117.29			1.0943	1.1478	26.341	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86119	0.95276	NaN	1	1	Median	1.3905	1.3828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46222000	18997000	27225000	0	0	0	19462000	10463000	8998400	26761000	8534100	18227000	0	0	0	29237	4813	27653	181563;181564	245379;245380	245380			2	
LASTGTSEYAAYDQNITPLHTDFSGSSTERI	0	Unmodified	3331.5481	0.54805879	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	76.735	76.017	3	5.938E-16	67621	160511_QHF_FH_JSI10i_2	86.48	80.993			1.228	1.3878	18.971	4	3	Median	NaN	NaN	NaN	0	0	Median	1.106	1.3306	NaN	1	1	Median	1.8351	1.8562	NaN	1	1	Median	1.2125	1.3109	14.017	2	1	Median	79361000	37785000	41576000	0	0	0	25691000	17291000	8399600	18979000	5130400	13848000	34691000	15363000	19328000	29238	4250	27654	181565;181566;181567;181568	245381;245382;245383;245384;245385;245386	245385			6	
LASTIADNQEQDLEK	1	Unmodified	1673.8108	0.81080883	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			40.043	39.247	2	1.4754E-21	35154	160511_QHF_FH_JSI10i_1	215.53	190.68			0.77447	0.77042	1.9138	2	0	Median	0.93091	0.76007	NaN	1	0	Median	0.64432	0.78092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133470000	78228000	55238000	52589000	28596000	23993000	80877000	49632000	31245000	0	0	0	0	0	0	29239	4215	27655	181569;181570	245387;245388;245389	245387			3	
LASTLVHLGEYQAAVDGAR	0	Unmodified	1970.0221	0.022139011	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.13		5	7						5	5	5	4	3	68.554	65.304	2;3	2.1416E-119	58451	160511_QHF_FH_JSI11i_3	322.23	273.57			1.1869	1.2433	23.049	17	1	Median	1.5127	1.2743	9.6628	5	0	Median	0.92196	1.1157	8.6061	5	0	Median	1.315	1.258	6.9293	4	1	Median	0.89716	0.95454	34.161	3	0	Median	9031400000	3906800000	5124600000	1767800000	628560000	1139200000	2926300000	1294100000	1632300000	3904900000	1749500000	2155500000	432330000	234680000	197650000	29240	2155	27656	181571;181572;181573;181574;181575;181576;181577;181578;181579;181580;181581;181582;181583;181584;181585;181586;181587	245390;245391;245392;245393;245394;245395;245396;245397;245398;245399;245400;245401;245402;245403;245404;245405;245406;245407;245408;245409;245410;245411;245412;245413;245414;245415;245416;245417;245418	245391			27	
LASTNSSVLGADLPSSMK	1	Unmodified	1776.8928	0.89276432	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	2	3	3	64.679	63.976	2;3	7.6219E-13	56692	160511_QHF_FH_JSI9i_1	163.99	140.14			1.0916	1.0022	21.371	11	1	Median	1.1557	0.92662	10.215	3	0	Plateau	0.83568	1.002	0.033821	2	0	Median	0.98392	0.9664	35.989	3	0	Plateau	0.93469	1.0137	22.395	3	1	Median	1157000000	589330000	567650000	224820000	107400000	117420000	255880000	151120000	104760000	405450000	182300000	223150000	270830000	148510000	122320000	29241	2409	27657	181588;181589;181590;181591;181592;181593;181594;181595;181596;181597;181598	245419;245420;245421;245422;245423;245424;245425;245426;245427;245428;245429;245430;245431;245432;245433	245428			15	
LASVLGSEPSLDSEVTSK	1	Unmodified	1817.9258	0.92583859	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.087	66.496	2	1.239E-24	60166	160511_QHF_FH_JSI10i_1	232.6	196.95			0.87012	0.88674	10.993	4	0	Median	1.2265	1.0008	NaN	1	0	Median	0.66837	0.77935	NaN	1	0	Median	0.86327	0.84363	NaN	1	0	Median	0.87703	0.93206	NaN	1	0	Median	458380000	255030000	203350000	102330000	56292000	46036000	105990000	61002000	44986000	141690000	83361000	58328000	108370000	54374000	53994000	29242	5119	27658	181599;181600;181601;181602	245434;245435;245436;245437;245438;245439;245440;245441;245442;245443	245441			10	
LASVLPEVKPK	2	Acetyl (K)	1221.7333	0.7332742	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	0.632						2	6	2		1	3	2	4	72.23	61.691	2;3	0.00012523	31286	160513_QHF_FH_JSI10Kac_3	94.297	83.773			1.0171	1.0449	14.831	9	0	Median	1.2535	1.0037	NaN	1	0	Median	0.85918	1.0113	6.4384	3	0	Median	1.2112	1.1869	31.031	2	0	Median	1.1182	1.2288	5.6563	3	0	Plateau	153750000	76522000	77223000	2504800	1016200	1488600	51633000	28757000	22877000	47717000	22332000	25385000	51891000	24418000	27473000	29243	190	27659	181603;181604;181605;181606;181607;181608;181609;181610;181611;181612	245444;245445;245446;245447;245448;245449;245450;245451;245452;245453;245454;245455	245454	101		12	
LASVLVSDWMAVIR	0	Unmodified	1558.8541	0.85413439	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.94	101.95	2	4.112E-05	88674	160511_QHF_FH_JSI12i_3	121.08	74.37			1.0758	1.0678	16.595	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2338	1.2007	NaN	1	0	Median	0.93805	0.94954	NaN	1	0	Median	158830000	77645000	81189000	0	0	0	0	0	0	63022000	25756000	37267000	95812000	51890000	43922000	29244	4206	27660	181613;181614	245456;245457	245457			2	
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	1	Unmodified	2773.4246	0.4246366	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.881	16	4	8							7	7	7	7	61.566	60.834	2;3;4;5	2.9699E-68	55194	160511_QHF_FH_JSI11i_1	240.85	235.07			1.0033	1.0124	14.777	28	1	Median	1.2283	1.0037	19.279	7	1	Median	0.91292	1.0779	17.81	7	0	Median	1.0361	0.99673	10.019	7	0	Median	0.96916	1.0192	12.354	7	0	Median	33389000000	14869000000	18520000000	7643700000	2815900000	4827700000	8992800000	3967300000	5025500000	8925700000	4261200000	4664600000	7826500000	3824400000	4002100000	29245	836	27661	181615;181616;181617;181618;181619;181620;181621;181622;181623;181624;181625;181626;181627;181628;181629;181630;181631;181632;181633;181634;181635;181636;181637;181638;181639;181640;181641;181642	245458;245459;245460;245461;245462;245463;245464;245465;245466;245467;245468;245469;245470;245471;245472;245473;245474;245475;245476;245477;245478;245479;245480;245481;245482;245483;245484;245485;245486;245487;245488;245489;245490;245491;245492;245493;245494;245495;245496;245497;245498;245499;245500;245501;245502;245503;245504;245505;245506;245507;245508;245509;245510;245511;245512;245513;245514;245515;245516;245517;245518	245468			61	
LASVPEYR	0	Unmodified	933.49198	0.4919813	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	30.989	29.673	2	0.03013	24971	160511_QHF_FH_JSI12i_2	41.652	3.2338			0.25494	0.27934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25494	0.27934	NaN	1	0	Median	183840000	145640000	38198000	0	0	0	0	0	0	0	0	0	183840000	145640000	38198000	29246	2134	27662	181643	245519	245519			1	
LASVPGSQTVVVK	1	Unmodified	1283.7449	0.74490152	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	5.6		4	2			3	3			2	4	3	3	50.229	44.628	2	0.00010086	38174	160511_QHF_FH_JSI12i_2	93.442	78.679			0.82443	0.88229	22.208	12	0	Median	1.0035	0.84499	31.998	2	0	Median	0.68539	0.81494	14.663	4	0	Median	0.74531	0.74694	30.176	3	0	Plateau	0.66677	0.7211	25.377	3	0	Plateau	908540000	526060000	382480000	225560000	116030000	109520000	201530000	113960000	87569000	237360000	138650000	98718000	244090000	157410000	86674000	29247	155	27663	181644;181645;181646;181647;181648;181649;181650;181651;181652;181653;181654;181655	245520;245521;245522;245523;245524;245525;245526;245527;245528;245529;245530;245531;245532;245533;245534	245520			15	
LASYLDK	1	Unmodified	808.43307	0.43306943	65;56;62	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__P19012;P19012;CON__A2A4G1;CON__P08730-1;P13645;CON__P13645;CON__P35527;P35527	KRT17;KRT14;KRT15;KRT10;KRT9	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 9	no	no	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	27.097	26.297	2	0.032894	23211	160511_QHF_FH_JSI10i_1	52.403	27.771		+	0.51009	0.58276	101.37	2	2	Median	NaN	NaN	NaN	0	0	Median	0.24583	0.28457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0584	1.1934	NaN	1	1	Median	485150000	332700000	152450000	0	0	0	152530000	94880000	57649000	0	0	0	332620000	237820000	94800000	29248	65;56;62	27664	181656;181657	245535;245536	245536			2	
LASYLDKVR	1	Acetyl (K)	1105.6132	0.61315906	65;56	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__P19012;P19012;CON__A2A4G1;CON__P08730-1;P13645;CON__P13645	KRT17;KRT14;KRT15;KRT10	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 10	no	no	1	0	0	1		By MS/MS	By MS/MS	By matching	15	0								3			1	1	1	62.114	51.344	2	0.037933	27980	160513_QHF_FH_JSI11Kac_5	46.39	26.687		+	0.50956	0.51028	51.098	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65164	0.78759	NaN	1	0	Median	0.50956	0.51028	NaN	1	0	Median	1.2508	1.4127	NaN	1	0	Median	19418000	12239000	7179100	0	0	0	6432700	4235400	2197300	8461200	6156100	2305100	4524300	1847600	2676700	29249	65;56	27665	181658;181659;181660	245537	245537			1	
LASYLDR	0	Unmodified	836.43922	0.43921744	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.46	3	3	4				2	4	2	4	4	5	5	30.157	25.682	2	0.0038708	14324	160513_QHF_FH_JSI9Kac_5	99.139	54.608			0.92508	0.99361	28.686	18	1	Median	0.9775	0.83516	21.233	4	0	Median	0.85414	1.0252	14.999	4	0	Median	1.0811	1.061	52.203	5	1	Median	0.92272	0.93272	8.5527	5	0	Median	11496000000	6149500000	5346500000	2126800000	941830000	1185000000	3487200000	2010200000	1477000000	2161900000	1035100000	1126800000	3720100000	2162400000	1557700000	29250	842	27666	181661;181662;181663;181664;181665;181666;181667;181668;181669;181670;181671;181672;181673;181674;181675;181676;181677;181678	245538;245539;245540;245541;245542;245543;245544;245545;245546;245547;245548;245549;245550;245551;245552	245542			15	
LASYVKFYQNNK	2	Acetyl (K)	1515.7722	0.7721789	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	65.984	56.232	2	7.5499E-14	30558	160513_QHF_FH_JSI11Kac_6	167.67	140.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25788000	25788000	0	0	0	0	0	0	0	22140000	22140000	0	3647700	3647700	0	29251	3222	27667	181679;181680	245553;245554	245553	2805		2	
LATAHAK	1	Unmodified	710.40752	0.40752338	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	2.03	1.9564	2	0.023698	1009	160511_QHF_FH_JSI11i_3	55.441	55.441			1.1345	1.1861	85.033	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2287	1.4187	NaN	1	0	Median	1.0475	0.99169	NaN	1	0	Median	0.72608	0.72673	136.57	2	1	Median	571650000	305440000	266220000	0	0	0	66628000	33387000	33242000	202110000	84052000	118060000	302910000	188000000	114910000	29252	1254	27668	181681;181682;181683;181684	245555;245556;245557;245558;245559;245560	245555			6	
LATALQK	1	Unmodified	743.45414	0.45413923	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.16	4	6	1			2	3	3		6	4	3	6	21.165	17.393	2	0.0049913	14959	160511_QHF_FH_JSI9i_2	105.2	48.098		+	1.0503	1.0896	51.845	18	9	Median	0.98138	0.83075	59.889	5	3	Median	1.3948	1.646	40.298	4	2	Median	1.535	1.5406	47.166	3	1	Plateau	0.88664	0.96593	55.822	6	3	Median	20368000000	9996600000	10372000000	5051300000	2368200000	2683100000	3934600000	2035900000	1898600000	5285600000	2432400000	2853300000	6096600000	3160000000	2936500000	29253	858;73;886;929;2069	27669	181685;181686;181687;181688;181689;181690;181691;181692;181693;181694;181695;181696;181697;181698;181699;181700;181701;181702;181703	245561;245562;245563;245564;245565;245566;245567;245568;245569;245570;245571;245572;245573;245574;245575;245576;245577;245578;245579;245580;245581;245582	245574			22	
LATALQKLEEAEK	2	Acetyl (K)	1484.8086	0.80862399	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		79.972	69.49	2	2.4755E-10	36857	160513_QHF_FH_JSI11Kac_5	162.6	88.44		+	0.016558	0.015795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.016558	0.015795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7890000	7733800	156200	0	0	0	1038100	1038100	0	6851900	6695700	156200	0	0	0	29254	858;73;886;929;2069	27670	181704;181705	245583;245584	245583	50;51		2	
LATAMQEGEYDAERPPSKPPPVELR	1	Unmodified	2780.3803	0.38032894	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			56.215	55.056	4	4.3576E-13	45911	160511_QHF_FH_JSI10i_3	102.21	95.26			0.97921	1.2345	16.708	3	1	Median	1.5377	1.3215	NaN	1	0	Median	0.9046	1.0898	17.625	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	281310000	135440000	145870000	86389000	28227000	58162000	194920000	107210000	87707000	0	0	0	0	0	0	29255	2516	27671	181706;181707;181708	245585;245586;245587;245588;245589;245590	245586			5	
LATATFAGIENK	1	Unmodified	1234.6558	0.65575216	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	51.335	50.375	2	0.00010681	43442	160511_QHF_FH_JSI11i_2	103.34	61.894			0.68881	0.71612	21.493	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61985	0.61516	NaN	1	1	Median	0.76545	0.83366	NaN	1	1	Median	92174000	55913000	36261000	0	0	0	0	0	0	54247000	36119000	18128000	37927000	19795000	18133000	29256	562	27672	181709;181710	245591;245592	245592			2	
LATATGAK	1	Unmodified	731.41775	0.41775372	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.51	4	4	2			3	2			4	2	4	5	7.7834	4.1864	2	0.0042817	4244	160511_QHF_FH_JSI12i_2	69.176	26.109			0.74151	0.81781	38.941	14	1	Median	1.1695	0.96332	21.595	3	0	Median	0.74582	0.88041	16.73	2	0	Median	0.72608	0.72443	30.104	4	0	Median	0.49427	0.54485	41.779	5	1	Median	5968900000	3265400000	2703500000	1131000000	484390000	646590000	1457700000	842560000	615100000	1843600000	979610000	863990000	1536600000	958860000	577790000	29257	4564	27673	181711;181712;181713;181714;181715;181716;181717;181718;181719;181720;181721;181722;181723;181724;181725	245593;245594;245595;245596;245597;245598;245599;245600;245601;245602;245603;245604;245605;245606;245607;245608;245609;245610	245596			18	
LATCSSDR	0	Unmodified	908.40218	0.40218001	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	5.8306	5.5324	2	0.0024197	3501	160511_QHF_FH_JSI10i_1	80.229	55.335			1.1402	1.1461	25.279	5	0	Median	1.9429	1.5844	NaN	1	0	Median	0.75508	0.89159	NaN	1	0	Median	1.1258	1.1182	3.4889	2	0	Median	1.5232	1.5983	NaN	1	0	Median	573340000	258260000	315080000	58708000	22849000	35859000	144680000	81812000	62864000	213370000	101790000	111580000	156590000	51809000	104780000	29258	1860	27674	181726;181727;181728;181729;181730	245611;245612;245613;245614;245615	245613			5	
LATDLLSLMPSLTSGEVAHCAK	1	Unmodified	2313.1709	0.17085344	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	101.03	101.01	3	8.9959E-16	90059	160511_QHF_FH_JSI11i_3	133.26	121.61			1.2143	1.1695	19.535	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81529	0.98018	NaN	1	1	Median	1.0485	0.98998	NaN	1	0	Median	1.3413	1.3816	NaN	1	0	Median	746310000	387950000	358370000	0	0	0	155460000	101740000	53720000	280390000	156380000	124010000	310470000	129830000	180640000	29259	3955	27675	181731;181732;181733	245616;245617;245618;245619;245620	245617			5	
LATEGSSGATEK	1	Unmodified	1149.5513	0.55134667	5061	Q9NW68	BSDC1	BSD domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By matching		1	0	2									1		1		9.0577	8.6298	2	0.0023492	6161	160511_QHF_FH_JSI9i_1	72.848	51.946			1.1803	1.051	48.239	2	0	Median	1.7945	1.4782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77633	0.74722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95056000	42864000	52192000	46737000	14797000	31941000	0	0	0	48318000	28067000	20251000	0	0	0	29260	5061	27676	181734;181735	245621	245621			1	
LATELYHQK	1	Unmodified	1101.5819	0.58185893	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.68		9	2						3	4	2	5	3	23.984	21.495	2;3	0.00023652	17718	160511_QHF_FH_JSI11i_2	84.498	49.203			1.129	1.1333	47.06	14	4	Median	0.81104	0.70769	69.881	4	2	Median	0.59182	0.7196	17.472	2	0	Median	1.119	1.1249	38.81	5	1	Median	1.2007	1.3548	15.48	3	1	Median	1521100000	765090000	755970000	202700000	116110000	86594000	349720000	191620000	158100000	502320000	241370000	260950000	466320000	216000000	250320000	29261	2242	27677	181736;181737;181738;181739;181740;181741;181742;181743;181744;181745;181746;181747;181748;181749	245622;245623;245624;245625;245626;245627;245628;245629;245630;245631;245632;245633;245634;245635	245630			13	
LATEVNWDEEK	1	Unmodified	1332.6198	0.61976058	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.998	45.313	2	1.825E-05	40943	160511_QHF_FH_JSI11i_1	105.98	81.945			1.4511	1.4185	22.262	3	3	Median	1.3685	1.1169	NaN	1	1	Median	1.4682	1.7426	NaN	1	1	Median	1.4511	1.4185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	149620000	62393000	87223000	43047000	16763000	26283000	61206000	26218000	34987000	45364000	19412000	25952000	0	0	0	29262	1499	27678	181750;181751;181752	245636;245637;245638	245636			3	
LATFWYYAK	1	Unmodified	1161.5859	0.58588168	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.65		6	2					2	4	3	3	4	4	76.296	71.45	2	4.2006E-07	38700	160513_QHF_FH_JSI10Kac_6	136.16	111.23			1.0249	1.0208	32.815	12	2	Median	1.1492	0.98115	24.17	3	1	Median	0.87209	1.0066	17.07	3	0	Median	1.1118	1.1398	11.801	3	1	Median	1.043	1.067	61.16	3	0	Plateau	36246000000	16534000000	19712000000	8123800000	3083300000	5040500000	11705000000	5758300000	5946900000	9905600000	4116600000	5789000000	6511800000	3575900000	2936000000	29263	592	27679	181753;181754;181755;181756;181757;181758;181759;181760;181761;181762;181763;181764;181765;181766	245639;245640;245641;245642;245643;245644;245645;245646;245647;245648;245649;245650;245651;245652;245653;245654;245655;245656;245657;245658;245659;245660	245659			22	
LATLGGSQALGLDGEIGNFEVGK	1	Unmodified	2245.159	0.15902642	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								3	5	4	4	95.003	94.696	2;3	5.587E-88	85697	160511_QHF_FH_JSI10i_1	253.02	223.68			0.96989	0.89802	16.078	16	3	Median	0.97768	0.82019	2.4685	3	0	Plateau	0.66164	0.80644	17.834	5	2	Median	1.0392	1.033	9.1752	4	1	Median	0.94706	0.99804	17.303	4	0	Median	767490000	433500000	333980000	109780000	64915000	44867000	240150000	139890000	100260000	193320000	103640000	89685000	224230000	125060000	99167000	29264	5536	27680	181767;181768;181769;181770;181771;181772;181773;181774;181775;181776;181777;181778;181779;181780;181781;181782	245661;245662;245663;245664;245665;245666;245667;245668;245669;245670;245671;245672;245673;245674;245675;245676;245677;245678;245679;245680;245681;245682;245683;245684;245685;245686;245687;245688;245689;245690;245691	245674			31	
LATLLGLQAPPTR	0	Unmodified	1349.8031	0.8030851	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.58		4	4					3		4	3	2	2	74.784	71.323	2	5.3854E-22	64548	160511_QHF_FH_JSI10i_2	172.17	155.15			1.0312	1.0356	23.861	11	3	Median	1.4364	1.2241	37.56	4	2	Median	0.84398	1.0356	15.914	3	1	Median	0.97045	0.93343	8.192	2	0	Median	0.88074	0.93817	15.916	2	0	Median	901410000	449270000	452140000	128600000	55125000	73470000	184850000	96865000	87988000	271440000	138950000	132500000	316520000	158330000	158180000	29265	2502	27681	181783;181784;181785;181786;181787;181788;181789;181790;181791;181792;181793	245692;245693;245694;245695;245696;245697;245698;245699;245700;245701;245702;245703;245704;245705;245706;245707;245708;245709;245710;245711;245712;245713;245714;245715;245716;245717;245718;245719;245720;245721;245722;245723;245724	245718			32	
LATLNIHDYLTK	1	Unmodified	1400.7664	0.76636524	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	67.105	66.513	3	6.1817E-05	57449	160511_QHF_FH_JSI12i_3	76.588	57.53			1.0213	1.0149	14.436	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68502	0.79864	NaN	1	0	Median	0.90542	0.84259	NaN	1	0	Median	1.0213	1.0488	NaN	1	0	Median	210510000	101420000	109090000	0	0	0	43179000	22569000	20611000	67570000	35949000	31621000	99757000	42898000	56859000	29266	4653	27682	181794;181795;181796	245725;245726;245727	245726			3	
LATMMVQGQEYEAGGSVIHPLNLHMK	1	Oxidation (M)	2869.3925	0.39249031	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	72.184	71.602	4	1.5357E-14	62741	160511_QHF_FH_JSI12i_3	96.303	89.027			0.96451	0.95894	5.1986	6	1	Median	NaN	NaN	NaN	0	0	Median	0.80907	0.94658	1.0323	2	1	Median	0.98509	0.91931	6.7711	2	0	Median	1.0001	1.0066	1.5896	2	0	Median	231470000	116340000	115140000	0	0	0	31863000	18802000	13061000	87772000	48740000	39032000	111840000	48795000	63045000	29267	5300	27683	181797;181798;181799;181800;181801;181802	245728;245729;245730;245731;245732;245733;245734	245734		2628;2629;2630	7	
LATMMVQGQEYEAGGSVIHPLNLHMK	1	Unmodified	2853.3976	0.39757568	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	78.456	77.865	3;4	9.9943E-36	67451	160511_QHF_FH_JSI12i_3	158.69	155.96			0.90597	0.94175	9.1098	7	0	Median	1.2941	1.1084	NaN	1	0	Median	0.75336	0.89878	6.6047	2	0	Median	0.97761	0.93296	11.648	2	0	Median	0.92681	0.9344	2.8585	2	0	Median	1159300000	554750000	604590000	35665000	18071000	17595000	122690000	70571000	52121000	261630000	120820000	140810000	739360000	345290000	394060000	29268	5300	27683	181803;181804;181805;181806;181807;181808;181809;181810	245735;245736;245737;245738;245739;245740;245741;245742;245743;245744;245745;245746;245747;245748;245749;245750;245751;245752	245752			18	
LATMYSSGSPEGGSDSSESRSEFLEK	1	Unmodified	2737.2025	0.20248373	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				52.533	51.488	3	5.0799E-09	45166	160511_QHF_FH_JSI9i_2	67.979	61.104			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12756000	0	12756000	12756000	0	12756000	0	0	0	0	0	0	0	0	0	29269	5409	27684	181811	245753	245753			1	
LATNAAVTVLR	0	Unmodified	1127.6663	0.66625727	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.3	4.29	3	4	2						1	1	3	3	3	48.668	48.038	2	0.00032929	40915	160511_QHF_FH_JSI12i_3	89.171	58.986			0.91215	0.94678	11.944	9	0	Median	1.1547	0.95374	NaN	1	0	Median	0.72953	0.87321	3.2291	2	0	Median	0.98219	0.94392	14.548	3	0	Median	0.91215	1.0933	12.442	3	0	Plateau	6563500000	3268200000	3295300000	662010000	284040000	377970000	1242800000	702920000	539910000	2274300000	1100400000	1173800000	2384400000	1180800000	1203600000	29270	1721	27685	181812;181813;181814;181815;181816;181817;181818;181819;181820;181821	245754;245755;245756;245757;245758;245759;245760;245761;245762;245763;245764;245765;245766;245767;245768;245769;245770	245769			17	
LATNAAVTVLRVDQIIMAK	1	Unmodified	2026.1609	0.1608811	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			3						1	2	1		1	95.646	93.369	3	0.0018582	84644	160511_QHF_FH_JSI12i_3	44.468	34.509			1.2646	1.1055	19.918	4	1	Median	1.292	1.0805	13.599	2	1	Median	1.3308	1.5276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99645	1.0274	NaN	1	0	Median	182730000	72550000	110180000	82815000	33220000	49595000	49940000	18110000	31831000	0	0	0	49976000	21220000	28756000	29271	1721	27686	181822;181823;181824;181825	245771;245772	245772			2	
LATNTSAPDLK	1	Unmodified	1129.5979	0.59790293	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	2					2				1	1	1	1	28.916	22.183	2	6.9698E-05	5918	160513_QHF_FH_JSI9Kac_3	96.113	53.031			0.4594	0.50067	123.78	4	2	Median	4.6791	3.6364	NaN	1	0	Median	0.24264	0.28723	NaN	1	1	Median	0.25914	0.25246	NaN	1	1	Median	0.81443	0.87273	NaN	1	0	Median	1648400000	1221400000	426980000	16330000	3946800	12383000	879380000	677650000	201740000	743060000	534230000	208820000	9608600	5572600	4036000	29272	1298	27687	181826;181827;181828;181829	245773;245774;245775;245776	245775			4	
LATQLTGPVMPVR	0	Oxidation (M)	1397.7701	0.77007041	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.72	5.97	1	3	3			1	4	6		3	3	5	7	56.961	50.306	2;3	3.2171E-08	28036	160513_QHF_FH_JSI12Kac_4	113.47	95.161			1.0304	1.0553	26.674	17	2	Median	1.201	1.0247	39.929	3	0	Median	0.90008	1.0707	12.995	2	1	Median	1.1034	1.0671	5.5401	5	0	Median	0.94145	1.0279	32.649	7	1	Median	1227100000	606960000	620150000	264820000	126470000	138340000	15106000	6555800	8550500	464520000	218170000	246350000	482670000	255760000	226910000	29273	1275	27688	181830;181831;181832;181833;181834;181835;181836;181837;181838;181839;181840;181841;181842;181843;181844;181845;181846;181847	245777;245778;245779;245780;245781;245782;245783;245784;245785;245786;245787;245788;245789;245790;245791;245792;245793;245794;245795;245796;245797;245798;245799	245790		908	23	
LATQLTGPVMPVR	0	Unmodified	1381.7752	0.77515579	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.54	7	8	4				3	6	4	6	8	9	9	66.767	62.406	2;3	7.4945E-41	56550	160511_QHF_FH_JSI10i_1	202.56	158.21			1.0267	1.0674	15.347	31	2	Median	1.3484	1.108	3.9847	6	0	Median	0.9325	1.0864	12.166	8	0	Median	1.0413	1.0114	18.031	9	0	Median	0.88208	0.94416	18.295	8	2	Median	19939000000	9794600000	10144000000	2989600000	1249900000	1739700000	5130000000	2745300000	2384700000	6663600000	3186300000	3477400000	5155200000	2613100000	2542100000	29274	1275	27688	181848;181849;181850;181851;181852;181853;181854;181855;181856;181857;181858;181859;181860;181861;181862;181863;181864;181865;181866;181867;181868;181869;181870;181871;181872;181873;181874;181875;181876;181877;181878;181879	245800;245801;245802;245803;245804;245805;245806;245807;245808;245809;245810;245811;245812;245813;245814;245815;245816;245817;245818;245819;245820;245821;245822;245823;245824;245825;245826;245827;245828;245829;245830;245831;245832;245833;245834;245835;245836;245837;245838;245839;245840;245841;245842;245843;245844;245845;245846;245847;245848;245849	245817			50	
LATQSNEITIPVTFESR	0	Unmodified	1904.9844	0.98435652	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.71	9	7	6				1	3		8	7	7	4	78.166	76.222	2;3	8.424E-266	67788	160511_QHF_FH_JSI11i_2	355.64	329.53			1.11	1.0449	13.528	24	1	Median	1.2077	1.0248	18.832	7	1	Median	0.82197	0.97022	11.628	7	0	Median	1.1035	1.1177	7.4628	6	0	Median	1.1208	1.1932	3.5347	4	0	Median	16721000000	8175800000	8545200000	2981700000	1359200000	1622500000	4539600000	2473500000	2066100000	5589000000	2558500000	3030500000	3610600000	1784600000	1826000000	29275	814	27689	181880;181881;181882;181883;181884;181885;181886;181887;181888;181889;181890;181891;181892;181893;181894;181895;181896;181897;181898;181899;181900;181901;181902;181903;181904;181905	245850;245851;245852;245853;245854;245855;245856;245857;245858;245859;245860;245861;245862;245863;245864;245865;245866;245867;245868;245869;245870;245871;245872;245873;245874;245875;245876;245877;245878;245879;245880;245881;245882;245883;245884;245885;245886;245887;245888;245889;245890;245891;245892;245893;245894;245895;245896	245886			46	
LATQSNEITIPVTFESRAQLGGPEAAK	1	Unmodified	2827.4716	0.47158679	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		78.555	77.866	3	2.8803E-09	69575	160511_QHF_FH_JSI11i_3	69.981	51.733			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22352000	22352000	0	0	0	0	5622500	5622500	0	16730000	16730000	0	0	0	0	29276	814	27690	181906;181907	245897;245898	245897			2	
LATSVLK	1	Unmodified	730.45889	0.45889025	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	27.956	26.793	2	0.035999	22435	160511_QHF_FH_JSI12i_2	49.358	16.888			1.1541	1.1268	11.956	2	0	Median	1.2256	1.0354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0868	1.2262	NaN	1	0	Median	122450000	65535000	56911000	53875000	27796000	26079000	0	0	0	0	0	0	68571000	37739000	30832000	29277	3115	27691	181908;181909	245899	245899			1	
LATTALYFTYSALEEEMER	0	Unmodified	2237.0562	0.056200835	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.898	89.178	3	6.627E-05	51372	160513_QHF_FH_JSI10Kac_6	73.11	64.922			0.99076	1.1795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99076	1.1795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121620000	60169000	61456000	0	0	0	121620000	60169000	61456000	0	0	0	0	0	0	29278	1355	27692	181910	245900	245900			1	
LATTILQHWK	1	Unmodified	1209.687	0.68699271	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.77	6.61		3	9						10	5	7	6	4	59.365	54.517	2;3	1.3319E-14	47694	160511_QHF_FH_JSI11i_3	138.66	131.77			0.83553	0.85025	36.593	21	5	Median	0.97299	0.78039	44.659	5	1	Median	0.7039	0.81063	45.255	7	2	Median	1.1491	1.092	24	5	2	Median	0.8419	1.0011	13.369	4	0	Linear	12971000000	5825000000	7146300000	2697400000	1102500000	1594800000	2444200000	1312900000	1131300000	3858700000	1675000000	2183700000	3971000000	1734500000	2236500000	29279	2094	27693	181911;181912;181913;181914;181915;181916;181917;181918;181919;181920;181921;181922;181923;181924;181925;181926;181927;181928;181929;181930;181931;181932	245901;245902;245903;245904;245905;245906;245907;245908;245909;245910;245911;245912;245913;245914;245915;245916;245917;245918;245919;245920;245921;245922;245923;245924;245925;245926;245927;245928;245929;245930;245931;245932;245933;245934;245935;245936;245937;245938;245939;245940;245941;245942;245943;245944;245945;245946;245947;245948;245949	245901			49	
LATTILQHWKK	2	Unmodified	1337.782	0.78195573	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			4						1	2	2	1		50.359	46.446	3;4	0.00035246	39954	160511_QHF_FH_JSI11i_3	70.488	53.546			1.2952	1.2559	16.306	3	3	Median	1.3274	1.1056	NaN	1	1	Median	1.1654	1.3854	13.876	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	199870000	91004000	108870000	73499000	28751000	44747000	126370000	62253000	64119000	0	0	0	0	0	0	29280	2094	27694	181933;181934;181935;181936;181937	245950;245951;245952;245953;245954	245950			5	
LATTILQHWKK	2	Acetyl (K)	1379.7925	0.79252041	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.851	61.387	3	0.00029878	33236	160513_QHF_FH_JSI11Kac_6	83.045	68.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30432000	30432000	0	0	0	0	0	0	0	30432000	30432000	0	0	0	0	29281	2094	27694	181938	245955	245955	2199		1	
LATTMTNHEK	1	Unmodified	1144.5547	0.55465791	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.94		7	3					1	1	3	2	3	4	11.08	9.3928	2;3	3.6845E-10	7277	160511_QHF_FH_JSI12i_3	118.4	99.658			0.97623	1.0687	52.389	12	3	Median	1.7149	1.4623	90.167	3	2	Median	0.8611	1.0589	5.5128	2	0	Median	1.5104	1.4754	78.745	3	1	Plateau	0.97623	1.0255	13.261	4	0	Median	2322300000	1099500000	1222800000	200160000	78168000	121990000	401950000	237180000	164770000	647550000	278500000	369050000	1072700000	505670000	567030000	29282	5445	27695	181939;181940;181941;181942;181943;181944;181945;181946;181947;181948;181949;181950	245956;245957;245958;245959;245960;245961;245962;245963;245964;245965;245966;245967;245968;245969	245968			14	
LATTMTNHEK	1	Oxidation (M)	1160.5496	0.54957253	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	1	0			By MS/MS	By matching	15	0								2				1	1	6.2928	-3.1518	3	0.0034498	2168	160513_QHF_FH_JSI11Kac_5	47.894	36.743			0.83615	0.87154	32.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1105	1.0982	NaN	1	0	Median	0.62956	0.69163	NaN	1	0	Median	6901900	3697100	3204700	0	0	0	0	0	0	5662000	3026200	2635800	1239900	670980	568910	29283	5445	27695	181951;181952	245970	245970		2662	1	
LATVEELK	1	Unmodified	901.51205	0.51204804	1328	P29803	PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				45.576	44.521	2	0.014654	38883	160511_QHF_FH_JSI9i_2	60.59	0			1.4105	1.2	NaN	1	1	Median	1.4105	1.2	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	197550000	89192000	108360000	197550000	89192000	108360000	0	0	0	0	0	0	0	0	0	29284	1328	27696	181953	245971	245971			1	
LATVHMSR	0	Unmodified	913.48037	0.48037075	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			7							2	2	1	2	14.669	14.143	2;3	0.00050124	11177	160511_QHF_FH_JSI9i_3	75.378	56.648			1.2381	1.0406	48.466	7	2	Median	1.3846	1.1105	9.2005	2	0	Median	0.9611	1.1015	56.653	2	1	Median	0.89732	0.85022	NaN	1	0	Median	0.66872	0.67322	86.207	2	1	Median	650870000	310040000	340820000	248020000	96107000	151920000	248420000	129100000	119320000	65371000	33687000	31684000	89055000	51150000	37905000	29285	751	27697	181954;181955;181956;181957;181958;181959;181960	245972;245973;245974;245975;245976;245977	245975			6	
LATVISVWNSDTQNPYHQQALAEK	1	Unmodified	2712.3507	0.35074337	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.56		2	5						5	3	3	3	3	76.233	72.517	3	1.0534E-93	37235	160513_QHF_FH_JSI9Kac_6	227.6	207.87			0.96179	0.97876	29.466	10	3	Median	1.6923	1.4556	42.354	2	1	Median	0.81613	0.93361	19.531	3	0	Median	0.90528	0.85376	7.6495	2	0	Median	0.9488	1.0261	29.532	3	2	Median	560510000	270750000	289750000	73215000	28158000	45057000	226220000	110580000	115640000	160120000	84477000	75642000	100960000	47541000	53417000	29286	1892	27698	181961;181962;181963;181964;181965;181966;181967;181968;181969;181970;181971;181972	245978;245979;245980;245981;245982;245983;245984;245985;245986;245987;245988;245989;245990;245991;245992;245993;245994;245995;245996;245997;245998;245999;246000;246001	245991			24	
LAVAEALTNLVFALVTDLR	0	Unmodified	2028.1619	0.16192696	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15.2	1.86				1					5		3	2	1	106.1	97.966	2;3	6.4209E-157	59448	160513_QHF_FH_JSI10Kac_6	281.93	259.88			0.78402	0.84397	15.29	6	0	Median	NaN	NaN	NaN	0	0	Median	0.777	0.92031	17.896	3	0	Median	0.87267	0.84397	11.881	2	0	Median	0.67467	0.72674	NaN	1	0	Median	1158500000	659930000	498560000	0	0	0	1074600000	613670000	460920000	62656000	33039000	29617000	21243000	13222000	8020900	29287	241	27699	181973;181974;181975;181976;181977;181978	246002;246003;246004;246005;246006;246007;246008;246009;246010;246011	246010			9	
LAVAEALTNLVFALVTDLRDVK	1	Unmodified	2370.3522	0.35224692	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			105.2	99.483	3	1.586E-73	58916	160513_QHF_FH_JSI10Kac_6	209.75	186.03			2.2028	2.6309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.2028	2.6309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	257780000	82242000	175540000	0	0	0	257780000	82242000	175540000	0	0	0	0	0	0	29288	241	27700	181979	246012	246012			1	
LAVAHPLLLLR	0	Unmodified	1214.7863	0.78631282	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	71.945	71.065	3	0.0004524	59773	160511_QHF_FH_JSI10i_3	60.064	52.418			1.0515	1.0254	30.377	4	2	Median	1.358	1.1328	NaN	1	0	Median	0.81412	0.92811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1248	1.2021	48.134	2	2	Median	52227000	23213000	29014000	13633000	5219500	8413800	13990000	7479900	6509600	0	0	0	24604000	10514000	14090000	29289	3508	27701	181980;181981;181982;181983	246013;246014;246015;246016;246017;246018	246014			6	
LAVASVTEILK	1	Unmodified	1142.6911	0.69107503	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	80.313	77.564	2	0.00032307	68254	160511_QHF_FH_JSI12i_2	75.378	53.93			0.90813	0.9475	10.481	5	0	Median	1.05	0.92101	NaN	1	0	Median	0.7624	0.9475	NaN	1	0	Median	0.90267	0.9193	5.4935	2	0	Median	1.044	1.1598	NaN	1	0	Median	122240000	65904000	56339000	18243000	8715600	9527500	27902000	15805000	12098000	42047000	21475000	20572000	34050000	19908000	14142000	29290	486	27702	181984;181985;181986;181987;181988	246019;246020;246021;246022	246019			4	
LAVATFAGIENK	1	Unmodified	1232.6765	0.6764876	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.91	2	3	4					1		1	3	4	2	64.679	63.926	2	2.677E-06	54959	160511_QHF_FH_JSI12i_2	121.41	81.367			0.65871	0.72056	30.542	7	7	Median	NaN	NaN	NaN	0	0	Median	0.66822	0.79388	48.733	2	2	Median	0.62106	0.60469	39.262	3	3	Median	0.68105	0.73413	2.6401	2	2	Median	664780000	397950000	266830000	0	0	0	168950000	104480000	64470000	287380000	171360000	116020000	208450000	122110000	86336000	29291	5345	27703	181989;181990;181991;181992;181993;181994;181995;181996;181997;181998	246023;246024;246025;246026;246027;246028;246029;246030;246031;246032	246026			10	
LAVDEEENADNNTK	1	Unmodified	1560.6904	0.69035934	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.55	9	1	2		4	5				2	4	6	9	26.147	21.988	2;3	2.4354E-24	19374	160511_QHF_FH_JSI10i_1	218.62	202.99			0.69369	0.71507	27.286	19	10	Linear	1.0172	0.81314	6.2263	2	1	Median	0.84736	0.99005	18.612	3	2	Plateau	1.1561	1.1418	19.375	6	3	Median	0.89415	0.96165	34.676	8	4	Median	6183000000	3329000000	2854000000	1294800000	684530000	610320000	1067400000	629920000	437460000	1101800000	532570000	569270000	2718900000	1481900000	1237000000	29292	793	27704	181999;182000;182001;182002;182003;182004;182005;182006;182007;182008;182009;182010;182011;182012;182013;182014;182015;182016;182017;182018;182019	246033;246034;246035;246036;246037;246038;246039;246040;246041;246042;246043;246044;246045;246046;246047;246048;246049;246050;246051;246052;246053;246054;246055;246056;246057	246047			24	
LAVEALSSLDGDLAGR	0	Unmodified	1585.8312	0.83115034	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.68	4	8	3							4	4	4	3	84.332	83.667	2;3	1.604E-07	72196	160511_QHF_FH_JSI12i_2	165.7	142.09			0.92185	0.9745	9.1177	15	5	Median	1.2056	0.98014	13.352	4	1	Median	0.85926	1.0405	6.5291	4	1	Median	0.92759	0.91962	4.0886	4	1	Median	0.8812	1.004	8.8183	3	2	Median	1814000000	952540000	861500000	374080000	187710000	186370000	399150000	212130000	187020000	432010000	235980000	196030000	608790000	316720000	292070000	29293	1017	27705	182020;182021;182022;182023;182024;182025;182026;182027;182028;182029;182030;182031;182032;182033;182034	246058;246059;246060;246061;246062;246063;246064;246065;246066;246067;246068;246069;246070;246071;246072;246073;246074;246075	246061			16	
LAVEAVLR	0	Unmodified	869.53345	0.53345218	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.3	3	4	4					2	3	2	4	5	5	56.021	52.706	2	0.00070646	45467	160511_QHF_FH_JSI11i_2	99.375	28.079			1.0499	1.0393	16.36	15	2	Median	1.1399	0.94821	0.61482	2	0	Median	0.82221	0.95233	13.187	4	0	Median	1.0596	1.0469	5.1831	4	1	Median	1.0499	1.0788	27.063	5	1	Median	1667200000	794470000	872740000	314000000	138950000	175050000	376970000	198360000	178600000	447170000	209030000	238140000	529060000	248120000	280940000	29294	2090	27706	182035;182036;182037;182038;182039;182040;182041;182042;182043;182044;182045;182046;182047;182048;182049;182050	246076;246077;246078;246079;246080;246081;246082;246083;246084;246085;246086;246087;246088;246089;246090;246091;246092;246093	246086			18	
LAVEILNK	1	Unmodified	898.54877	0.54876789	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	55.156	54.22	2	0.0015903	46592	160511_QHF_FH_JSI12i_2	83.753	39.031			0.43172	0.44154	17.037	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.48928	0.61554	NaN	1	1	Median	0.4292	0.43785	NaN	1	1	Median	0.46286	0.52289	NaN	1	1	Median	390940000	277960000	112980000	0	0	0	96443000	65838000	30605000	163630000	118910000	44720000	130870000	93214000	37657000	29295	1162	27707	182051;182052;182053;182054;182055;182056	246094;246095;246096;246097;246098;246099	246095			6	
LAVGDNNSK	1	Unmodified	916.46141	0.46140945	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	6.13	3					1	1					3	2	13.927	9.0087	2	0.0049864	8667	160511_QHF_FH_JSI11i_1	65.224	42.7			0.50009	0.48663	35.998	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6907	0.67453	46.175	2	1	Median	0.79872	0.87706	NaN	1	0	Median	724920000	458850000	266070000	0	0	0	0	0	0	707500000	449560000	257940000	17420000	9292700	8127800	29296	1600	27708	182057;182058;182059;182060;182061	246100;246101;246102;246103;246104;246105	246100			6	
LAVGDNNSKWVK	2	Acetyl (K)	1371.7147	0.71466402	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		60.52	49.658	2	0.0009349	28326	160513_QHF_FH_JSI11Kac_4	83.862	63.872			0.4176	0.44821	72.564	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63637	0.74872	NaN	1	0	Median	0.27403	0.26831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18178000	13264000	4914200	0	0	0	5831000	3335100	2495900	12347000	9928500	2418300	0	0	0	29297	1600	27709	182062;182063	246106;246107	246107	1627;1628		2	
LAVHPLLK	1	Unmodified	889.57492	0.57492306	3637	Q8NEF9	SRFBP1	Serum response factor-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.895	38.104	3	0.002955	32199	160511_QHF_FH_JSI12i_3	53.166	34.436			0.86528	0.84334	22.637	4	0	Median	0.93402	0.76274	NaN	1	0	Median	0.80161	0.93246	NaN	1	0	Median	0.79473	0.7291	NaN	1	0	Median	1.1857	1.1974	NaN	1	0	Median	281410000	143610000	137800000	62245000	24643000	37602000	45182000	28576000	16606000	71763000	39022000	32741000	102220000	51371000	50853000	29298	3637	27710	182064;182065;182066;182067	246108;246109;246110;246111;246112;246113;246114;246115	246114			8	
LAVHPSGVALQDR	0	Unmodified	1361.7415	0.74154747	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.08		4	10						3	5	4	4	4	38.582	36.649	2;3	1.1568E-05	30419	160511_QHF_FH_JSI10i_3	112.02	104.48			0.81095	0.75413	19.183	15	5	Median	0.91253	0.74258	9.0045	4	1	Median	0.67425	0.80624	33.866	4	1	Median	0.93755	0.86724	14.806	3	1	Plateau	0.74088	0.76012	17.421	4	2	Median	2242900000	1156100000	1086800000	196950000	104400000	92547000	403190000	241060000	162130000	935160000	449460000	485700000	707640000	361210000	346430000	29299	828	27711	182068;182069;182070;182071;182072;182073;182074;182075;182076;182077;182078;182079;182080;182081;182082;182083;182084	246116;246117;246118;246119;246120;246121;246122;246123;246124;246125;246126;246127;246128;246129;246130;246131;246132;246133;246134;246135;246136;246137;246138;246139;246140;246141;246142;246143;246144	246124			29	
LAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK	1	Unmodified	3292.8507	0.85071058	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	2	2	1		94.025	91.079	4	8.7962E-58	44823	160513_QHF_FH_JSI10Kac_6	167.88	162.39			0.78394	0.76302	27.314	5	0	Median	0.7725	0.64647	23.442	2	0	Median	0.68807	0.80238	20.989	2	0	Median	1.2016	1.1149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1280000000	712980000	567000000	429210000	241930000	187280000	834990000	464780000	370220000	15777000	6267900	9508800	0	0	0	29300	828	27712	182085;182086;182087;182088;182089	246145;246146;246147;246148;246149;246150;246151;246152;246153	246153			9	
LAVLITNSNVR	0	Unmodified	1198.7034	0.70337105	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.84		1	3				1	4	4	5	4	2	2	59.884	52.567	2	6.5001E-08	26663	160513_QHF_FH_JSI10Kac_5	117.89	77.621			0.921	1.0049	31.718	13	3	Median	1.053	0.89523	47.498	5	1	Median	0.82572	0.99986	20.253	4	2	Median	1.1141	1.0884	2.4831	2	0	Median	0.96258	0.99697	10.158	2	0	Median	971620000	551200000	420420000	317960000	190820000	127140000	400190000	234750000	165440000	125110000	59612000	65495000	128360000	66018000	62346000	29301	1739	27713	182090;182091;182092;182093;182094;182095;182096;182097;182098;182099;182100;182101;182102	246154;246155;246156;246157;246158;246159;246160;246161;246162;246163;246164;246165;246166;246167;246168;246169;246170;246171	246164			17	
LAVLKYYK	2	Acetyl (K)	1038.6114	0.61136815	2042	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	1	0	0	1	By matching		By MS/MS	By MS/MS	15.5	0.5								2	2	1		2	1	70.05	59.868	2	0.015423	32389	160513_QHF_FH_JSI11Kac_6	67.032	33.235			0.42422	0.39598	24.726	4	0	Median	0.5319	0.45779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33471	0.32542	7.2394	2	0	Median	0.49584	0.52584	NaN	1	0	Median	196680000	162360000	34323000	1507700	1072400	435270	0	0	0	164330000	136390000	27938000	30847000	24897000	5949200	29302	2042	27714	182103;182104;182105;182106	246172;246173;246174	246172	2104;2105		3	
LAVLPPELAHTTELHVLDVAGNR	0	Unmodified	2464.3438	0.3438075	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		2	3	92.424	92.355	3;4	1.3648E-11	79857	160511_QHF_FH_JSI12i_3	108.37	101.4			1.122	1.1101	23.892	5	1	Median	1.8936	1.6801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0574	0.98473	16.941	2	0	Median	1.0871	1.1016	6.4301	2	1	Median	411320000	202050000	209270000	15777000	6507700	9269300	0	0	0	216330000	107860000	108470000	179210000	87682000	91533000	29303	2506	27715	182107;182108;182109;182110;182111;182112	246175;246176;246177;246178;246179;246180;246181;246182	246179			8	
LAVLPYELR	0	Unmodified	1072.6281	0.62808085	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	71.625	70.625	2	0.00052912	62221	160511_QHF_FH_JSI9i_2	89.142	80.37			0.94804	1.0705	16.909	5	4	Median	1.2806	1.1098	NaN	1	1	Median	0.76609	0.92487	20.686	2	2	Median	0.94804	0.95871	NaN	1	0	Median	1.12	1.2509	NaN	1	1	Median	409600000	202460000	207140000	56358000	26753000	29606000	89060000	48199000	40861000	174220000	86165000	88058000	89959000	41341000	48619000	29304	5414	27716	182113;182114;182115;182116;182117	246183;246184;246185;246186;246187;246188	246185			6	
LAVLSSSLTHWK	1	Unmodified	1340.7452	0.74523587	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		2	2	3	66.125	64.711	2;3	5.1439E-08	55871	160511_QHF_FH_JSI12i_3	110.08	103.42			0.97679	0.94815	42.752	7	3	Median	NaN	NaN	NaN	0	0	Median	1.2736	1.526	39.649	2	1	Median	1.0573	1.0146	9.5778	2	0	Median	0.82602	0.85335	33.657	3	2	Median	1690100000	933980000	756110000	0	0	0	249840000	110120000	139710000	600040000	294830000	305210000	840210000	529020000	311180000	29305	3051	27717	182118;182119;182120;182121;182122;182123;182124	246189;246190;246191;246192;246193;246194;246195	246191			7	
LAVNMVPFPR	0	Oxidation (M)	1158.6219	0.62194961	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.73	5	19	17				3	7	5	12	14	17	13	65.818	62.294	2;3	1.072E-10	54872	160511_QHF_FH_JSI10i_2	144.38	130.8			1.0667	1.0994	17.318	52	5	Median	1.3758	1.1325	17.613	11	1	Median	0.98002	1.133	20.013	13	0	Median	1.036	1.03	14.271	15	3	Median	0.92736	1.0221	16.108	13	1	Median	13201000000	6232200000	6968900000	2001900000	801650000	1200300000	2898000000	1448200000	1449900000	4315900000	2061800000	2254100000	3985300000	1920600000	2064700000	29306	872;2075;2477;2824;811;4440;2430	27718	182125;182126;182127;182128;182129;182130;182131;182132;182133;182134;182135;182136;182137;182138;182139;182140;182141;182142;182143;182144;182145;182146;182147;182148;182149;182150;182151;182152;182153;182154;182155;182156;182157;182158;182159;182160;182161;182162;182163;182164;182165;182166;182167;182168;182169;182170;182171;182172;182173;182174;182175;182176;182177;182178;182179;182180	246196;246197;246198;246199;246200;246201;246202;246203;246204;246205;246206;246207;246208;246209;246210;246211;246212;246213;246214;246215;246216;246217;246218;246219;246220;246221;246222;246223;246224;246225;246226;246227;246228;246229;246230;246231;246232;246233;246234;246235;246236;246237;246238;246239;246240;246241;246242;246243;246244;246245;246246;246247;246248;246249;246250;246251;246252;246253;246254;246255;246256;246257;246258;246259;246260;246261;246262;246263;246264;246265;246266;246267;246268;246269;246270;246271	246253		326;1951	76	
LAVNMVPFPR	0	Unmodified	1142.627	0.62703499	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.45	6	9	9				1	4	8	9	9	11	8	76.775	73.147	2;3	7.0986E-12	61414	160511_QHF_FH_JSI9i_3	166.96	166.96			0.98016	0.98895	15.547	35	7	Median	1.1621	0.99034	18.396	9	0	Median	0.86849	1.0362	16.131	9	2	Median	0.9981	1.0016	10.671	9	2	Median	0.85311	0.88026	13.355	8	3	Median	84924000000	41597000000	43326000000	14160000000	5249500000	8910100000	19718000000	10261000000	9457100000	23239000000	12144000000	11095000000	27807000000	13943000000	13864000000	29307	872;2075;2477;2824;811;4440;2430	27718	182181;182182;182183;182184;182185;182186;182187;182188;182189;182190;182191;182192;182193;182194;182195;182196;182197;182198;182199;182200;182201;182202;182203;182204;182205;182206;182207;182208;182209;182210;182211;182212;182213;182214;182215;182216;182217	246272;246273;246274;246275;246276;246277;246278;246279;246280;246281;246282;246283;246284;246285;246286;246287;246288;246289;246290;246291;246292;246293;246294;246295;246296;246297;246298;246299;246300;246301;246302;246303;246304;246305;246306;246307;246308;246309;246310;246311;246312;246313;246314;246315;246316;246317;246318;246319;246320;246321;246322;246323;246324;246325;246326;246327;246328;246329;246330;246331;246332;246333;246334;246335;246336;246337;246338;246339;246340;246341;246342;246343;246344	246303			73	
LAVNMVPFPRLHFFMPGFAPLTSR	0	Oxidation (M)	2760.4396	0.43963892	2075;872;2477;811;4440;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			92.638	85.349	4	0.00067452	49530	160513_QHF_FH_JSI10Kac_6	65.425	57.892			1.6629	1.6758	208.78	2	2	Median	8.4764	7.3346	NaN	1	1	Median	0.32622	0.3829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141870000	88389000	53482000	38037000	4700300	33337000	103830000	83688000	20145000	0	0	0	0	0	0	29308	872;2075;2477;2824;811;4440	27719	182218;182219	246345;246346	246346		326;327	2	
LAVNMVPFPRLHFFMPGFAPLTSR	0	Unmodified	2744.4447	0.44472429	2075;872;2477;811;4440;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			95.805	88.411	4	3.8963E-05	49385	160513_QHF_FH_JSI9Kac_6	89.511	50.928			1.0763	1.0838	250.23	2	2	Median	7.5011	6.3589	NaN	1	1	Median	0.15443	0.18473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	762970000	512510000	250470000	222390000	27806000	194580000	540580000	484700000	55884000	0	0	0	0	0	0	29309	872;2075;2477;2824;811;4440	27719	182220;182221	246347;246348	246347			2	
LAVNNIAGIEEVNMIK	1	Unmodified	1726.9288	0.9287559	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.61	0.591	8	9	1							4	4	4	6	86.355	85.752	2;3	1.6559E-21	76160	160511_QHF_FH_JSI10i_2	204.49	156.05			0.91246	0.93793	20.466	18	6	Median	1.1207	0.95294	34.226	4	2	Median	0.70669	0.8493	16.384	4	0	Median	1.0017	0.9843	10.138	4	0	Median	0.9028	0.97374	14.443	6	4	Median	1065600000	537860000	527790000	178350000	84356000	93990000	255140000	148650000	106500000	319280000	148850000	170430000	312880000	156010000	156870000	29310	4146	27720	182222;182223;182224;182225;182226;182227;182228;182229;182230;182231;182232;182233;182234;182235;182236;182237;182238;182239	246349;246350;246351;246352;246353;246354;246355;246356;246357;246358;246359;246360;246361;246362;246363;246364;246365;246366;246367;246368;246369;246370;246371;246372;246373;246374;246375;246376;246377;246378;246379	246377			31	
LAVNNIAGIEEVNMIKDDGTVIHFNNPK	2	Unmodified	3064.5652	0.5651696	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		93.39	93.39	4	0.0017303	83173	160511_QHF_FH_JSI11i_3	31.76	29.447			0.78316	0.74728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78316	0.74728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41991000	21913000	20078000	0	0	0	0	0	0	41991000	21913000	20078000	0	0	0	29311	4146	27721	182240	246380	246380			1	
LAVNVMGTLLTVLTQAK	1	Unmodified	1771.0277	0.027741661	4633	Q9H0H0	INTS2	Integrator complex subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		103.35	103.35	3	0.011038	92430	160511_QHF_FH_JSI11i_3	39.657	33.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29312	4633	27722	182241	246381	246381			1	
LAVPASLDVCDNWLR	0	Unmodified	1727.8665	0.86648999	3456	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.75	0.433		1	3							1	1	1	1	31.382	30.76	3	0.024982	27382	160511_QHF_FH_JSI9i_2	27.029	8.1964			0.90209	0.87767	23.501	4	0	Median	1.1997	1.0328	NaN	1	0	Median	1.0134	1.1355	NaN	1	0	Median	0.80298	0.74585	NaN	1	0	Median	0.703	0.70692	NaN	1	0	Median	391690000	207270000	184420000	59168000	26305000	32863000	137640000	71510000	66129000	115980000	63862000	52123000	78903000	45593000	33309000	29313	3456	27723	182242;182243;182244;182245	246382;246383;246384;246385	246385			4	
LAVQFTNR	0	Unmodified	947.51886	0.51886475	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			39.207	37.717	2	0.047995	31518	160511_QHF_FH_JSI10i_3	46.426	4.9236			0.8461	0.9793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8461	0.9793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38284000	18753000	19531000	0	0	0	38284000	18753000	19531000	0	0	0	0	0	0	29314	3238	27724	182246	246386	246386			1	
LAVQIGK	1	Unmodified	727.45922	0.4592246	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0			By MS/MS		2	0		1										1		33.507	33.108	2	0.031522	28175	160511_QHF_FH_JSI11i_2	51.572	8.5061			0.85583	0.84708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85583	0.84708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44464000	23055000	21410000	0	0	0	0	0	0	44464000	23055000	21410000	0	0	0	29315	1239;1168;2177;2758	27725	182247	246387	246387			1	
LAVQNSSLHDIQHAPK	1	Unmodified	1756.922	0.92203104	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	33.401	33.291	3	0.017893	28119	160511_QHF_FH_JSI12i_3	38.376	20.631			3.315	3.444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.315	3.444	NaN	1	1	Median	134320000	26704000	107620000	0	0	0	0	0	0	0	0	0	134320000	26704000	107620000	29316	232	27726	182248	246388	246388			1	
LAVQQVEEAQQLR	0	Unmodified	1510.8104	0.81035532	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	52.691	51.917	2	3.6255E-22	45841	160511_QHF_FH_JSI10i_2	175.86	139.44			0.93355	0.94979	11.172	9	4	Median	1.1916	0.98609	22.41	2	1	Median	0.82371	0.94979	10.686	3	2	Median	0.9354	0.90444	4.1684	2	0	Median	0.93853	1.034	5.6767	2	1	Median	528780000	272840000	255940000	84634000	37391000	47243000	210970000	113010000	97965000	137250000	71466000	65788000	95918000	50976000	44942000	29317	138	27727	182249;182250;182251;182252;182253;182254;182255;182256;182257	246389;246390;246391;246392;246393;246394;246395;246396;246397;246398;246399	246399			11	
LAVTKPNNIK	2	Unmodified	1096.6604	0.66044361	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	24.321	23.663	3	0.010871	19346	160511_QHF_FH_JSI12i_3	40.715	24.512			1.1001	1.0005	26.534	4	0	Median	1.2402	0.99469	NaN	1	0	Median	0.76646	0.88497	NaN	1	0	Median	1.7347	1.6119	NaN	1	0	Median	0.97578	1.0064	NaN	1	0	Median	561540000	275050000	286480000	146380000	70343000	76037000	115240000	66439000	48798000	98694000	41516000	57178000	201230000	96756000	104470000	29318	940	27728	182258;182259;182260;182261	246400;246401;246402;246403;246404	246403			5	
LAVTKPNNIK	2	Acetyl (K)	1138.671	0.67100829	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	53.213	42.903	2	0.0018255	23718	160513_QHF_FH_JSI10Kac_4	83.005	53.196			0.95332	1.0419	9.1677	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95332	1.1317	9.4348	2	0	Median	1.0455	1.0254	NaN	1	0	Median	0.88136	0.97668	NaN	1	0	Median	43078000	23272000	19806000	0	0	0	18214000	10150000	8064300	13430000	7327300	6102400	11435000	5795600	5638900	29319	940	27728	182262;182263;182264;182265	246405;246406;246407;246408;246409	246405	704		5	
LAVVDEWRK	1	Unmodified	1114.6135	0.61349341	3663	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	44.118	43.998	3	0.00024556	37624	160511_QHF_FH_JSI12i_3	70.908	45.287			1.1681	1.1306	7.8145	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2765	1.1948	NaN	1	0	Median	1.0689	1.0698	NaN	1	0	Median	197610000	85445000	112170000	0	0	0	0	0	0	104830000	48083000	56748000	92782000	37362000	55420000	29320	3663	27729	182266;182267	246410;246411;246412;246413	246413			4	
LAVVDPLFGMQPIR	0	Unmodified	1554.8592	0.85921977	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	100.76	100.64	2;3	1.1415E-09	89104	160511_QHF_FH_JSI10i_2	144.77	108.24			0.82213	0.99844	43.455	9	2	Median	1.4369	1.2265	4.9368	2	1	Median	0.95766	1.1953	25.455	2	0	Median	0.52616	0.51063	29.572	3	1	Median	0.99964	1.1089	35.373	2	0	Median	879490000	498360000	381130000	131840000	55083000	76757000	153650000	93316000	60335000	362590000	220530000	142060000	231410000	129430000	101980000	29321	900	27730	182268;182269;182270;182271;182272;182273;182274;182275;182276	246414;246415;246416;246417;246418;246419;246420	246419			6	
LAVYIDK	1	Unmodified	820.46945	0.46945494	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		51.762	41.145	2	0.020425	23077	160513_QHF_FH_JSI10Kac_4	69.998	37.528			0.37697	0.40306	9.8561	2	0	Median	NaN	NaN	NaN	0	0	Median	0.32249	0.37592	NaN	1	0	Median	0.44066	0.43215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24460000	17477000	6983000	0	0	0	11016000	8497000	2519500	13443000	8979700	4463500	0	0	0	29322	1180	27731	182277;182278	246421;246422	246421			2	
LAVYIDR	0	Unmodified	848.4756	0.47560295	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.59	3	1					2	4		1	3	2	4	47.034	40.487	2	0.00062822	21741	160513_QHF_FH_JSI9Kac_5	114.72	37.347			0.92018	1.0457	14.878	10	0	Median	0.87459	0.73895	NaN	1	0	Median	0.81897	0.96088	6.6226	3	0	Plateau	1.1633	1.1476	11.959	2	0	Median	0.95161	1.0457	12.491	4	0	Median	2327800000	1151800000	1176000000	82573000	42819000	39754000	529540000	264840000	264700000	453850000	201570000	252270000	1261900000	642560000	619320000	29323	791	27732	182279;182280;182281;182282;182283;182284;182285;182286;182287;182288	246423;246424;246425;246426;246427;246428;246429;246430;246431;246432;246433;246434;246435;246436;246437	246426			15	
LAWALALR	0	Unmodified	912.55452	0.55452197	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		79.355	71.824	2	0.00080935	39692	160513_QHF_FH_JSI10Kac_6	105.22	105.22			1.1065	1.1603	8.4799	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94595	1.0928	NaN	1	0	Median	1.2944	1.232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64452000	30993000	33460000	0	0	0	53940000	26459000	27481000	10512000	4533700	5978200	0	0	0	29324	3862	27733	182289;182290	246438;246439	246439			2	
LAWAPLVDAQGSAR	0	Unmodified	1453.7678	0.76776222	4056	Q96ES6	MFSD3	Major facilitator superfamily domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	72.276	71.854	2	0.0011499	64086	160511_QHF_FH_JSI11i_3	65.574	48.549			1.0754	1.0164	11.587	4	2	Median	NaN	NaN	NaN	0	0	Median	0.76856	0.90726	NaN	1	1	Median	1.1805	1.1251	5.263	2	1	Median	1.0232	0.95311	NaN	1	0	Median	90936000	46346000	44589000	0	0	0	17212000	10024000	7188400	41887000	21616000	20271000	31836000	14706000	17129000	29325	4056	27734	182291;182292;182293;182294	246440;246441;246442;246443;246444;246445	246440			6	
LAWEQQEPGERK	1	Unmodified	1469.7263	0.72629134	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		27.909	27.909	3	0.012942	24007	160511_QHF_FH_JSI11i_3	42.209	35.481			1.1301	1.0252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1301	1.0252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40504000	24767000	15737000	0	0	0	0	0	0	40504000	24767000	15737000	0	0	0	29326	2496	27735	182295	246446	246446			1	
LAWMGTWEHLVSTGFNQMR	0	Unmodified	2263.0667	0.066663137	1894	P57737	CORO7	Coronin-7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.508	86.787	3	4.7524E-08	49677	160513_QHF_FH_JSI10Kac_6	100.97	92.974			1.0538	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137850000	60645000	77207000	0	0	0	137850000	60645000	77207000	0	0	0	0	0	0	29327	1894	27736	182296	246447	246447			1	
LAWTLTANQPSSQATTSK	1	Unmodified	1903.964	0.96395543	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	58.877	58.746	2	2.418E-23	52130	160511_QHF_FH_JSI11i_3	132.79	115.85			1.8259	1.8272	4.3181	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9801	1.8838	NaN	1	1	Median	1.6837	1.7722	NaN	1	1	Median	37358000	7986500	29372000	0	0	0	0	0	0	19100000	4669200	14430000	18258000	3317400	14941000	29328	4018	27737	182297;182298;182299	246448;246449;246450	246449			3	
LAWVSHDSTVSVADASK	1	Unmodified	1771.8741	0.87407779	3879	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	50.421	50.264	2;3	2.785E-16	43047	160511_QHF_FH_JSI12i_3	116.24	98.429			0.93261	0.94396	62.959	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78671	0.7567	NaN	1	0	Median	1.4966	1.5278	68.093	2	1	Median	433680000	219390000	214290000	0	0	0	0	0	0	176820000	81483000	95338000	256860000	137910000	118950000	29329	3879	27738	182300;182301;182302;182303	246451;246452;246453;246454	246454			4	
LAYAIIQFLHDQLR	0	Unmodified	1699.941	0.94097556	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	3	3	3	91.745	83.417	2;3	2.2198E-24	46401	160513_QHF_FH_JSI9Kac_6	217.35	185.29			4.275	17.998	158.44	10	10	Linear	2.1016	1.8014	267.56	2	2	Median	4.809	5.6481	0.08041	2	2	Median	7.6683	7.253	176.44	3	3	Plateau	6.6874	7.0005	183.23	3	3	Plateau	3597000000	1178200000	2418900000	531340000	66857000	464480000	1417100000	586750000	830380000	498450000	143590000	354860000	1150100000	380960000	769140000	29330	372	27739	182304;182305;182306;182307;182308;182309;182310;182311;182312;182313;182314;182315	246455;246456;246457;246458;246459;246460;246461;246462;246463;246464;246465;246466	246460			12	
LAYELYTEALGIDPNNIK	1	Unmodified	2036.0466	0.046622427	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	5	10								1	6	3	5	99.007	98.867	2;3	5.8058E-07	89533	160511_QHF_FH_JSI10i_1	91.914	70.685			1.2433	1.3124	33.94	10	6	Median	1.4287	1.2392	NaN	1	1	Median	1.0969	1.306	32.563	3	2	Median	1.2199	1.1916	60.031	2	1	Median	1.3232	1.4039	31.407	4	2	Median	217530000	114880000	102640000	14633000	6517400	8115900	70743000	34698000	36045000	57995000	34991000	23004000	74155000	38676000	35479000	29331	4294	27740	182316;182317;182318;182319;182320;182321;182322;182323;182324;182325;182326;182327;182328;182329;182330	246467;246468;246469;246470;246471;246472;246473;246474;246475;246476;246477;246478;246479;246480;246481;246482;246483;246484	246477			18	
LAYHAYQK	1	Unmodified	992.50797	0.50796571	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	14.871	14.393	2;3	0.00092581	11431	160511_QHF_FH_JSI11i_3	69.998	43.615			0.69875	0.7459	25.118	8	1	Median	1.1575	0.95115	6.9225	2	0	Median	0.65611	0.75144	3.5581	2	0	Median	0.70963	0.67013	17.662	2	0	Median	0.55829	0.5624	33.667	2	1	Median	960700000	543920000	416780000	135510000	55951000	79560000	162110000	87031000	75075000	238030000	130920000	107100000	425060000	270020000	155040000	29332	714	27741	182331;182332;182333;182334;182335;182336;182337;182338	246485;246486;246487;246488;246489;246490;246491;246492;246493;246494;246495	246485			11	
LAYHPLK	1	Unmodified	840.48577	0.48577371	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	3	2	20.547	19.98	2;3	0.0077146	16015	160511_QHF_FH_JSI12i_3	50.966	35.527			1.2879	1.3968	43.141	10	6	Median	1.0487	0.87102	35.535	2	0	Median	1.2618	1.5418	16.299	3	2	Median	3.0476	2.9226	44.502	3	3	Plateau	1.2825	1.3106	38.866	2	1	Median	2194000000	685660000	1508300000	208570000	95377000	113190000	538870000	190490000	348380000	495410000	93761000	401650000	951150000	306030000	645110000	29333	4260	27742	182339;182340;182341;182342;182343;182344;182345;182346;182347;182348	246496;246497;246498;246499;246500;246501;246502;246503;246504;246505;246506	246506			11	
LAYHPLKMQSCYEK	2	Acetyl (K)	1808.859	0.85896177	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.734	48.012	3	0.0055598	25969	160513_QHF_FH_JSI11Kac_6	57.159	46.214			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5383300	5383300	0	0	0	0	0	0	0	5383300	5383300	0	0	0	0	29334	4260	27743	182349	246507	246507	3092		1	
LAYIAHPK	1	Unmodified	911.52289	0.52288749	1610	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.52		8	8					3	8	7	7	6	7	22.347	18.427	2;3	0.00018744	15462	160511_QHF_FH_JSI12i_2	88.942	65.514			1.1037	0.98133	22.919	27	1	Median	1.1762	0.96903	7.1781	7	0	Median	0.82166	0.98133	23.85	7	0	Median	1.2025	1.2099	12.92	6	0	Median	0.84171	0.90963	33.299	7	1	Median	40967000000	20166000000	20801000000	6162700000	2534400000	3628300000	6679500000	3855300000	2824200000	14057000000	7102100000	6955000000	14068000000	6674400000	7393700000	29335	1610	27744	182350;182351;182352;182353;182354;182355;182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373;182374;182375;182376	246508;246509;246510;246511;246512;246513;246514;246515;246516;246517;246518;246519;246520;246521;246522;246523;246524;246525;246526;246527;246528;246529;246530;246531;246532;246533;246534;246535;246536;246537;246538;246539;246540;246541;246542;246543;246544;246545;246546;246547;246548;246549;246550	246513			43	
LAYIAHPKLGK	2	Acetyl (K)	1251.7339	0.7339429	1610	P47914	RPL29	60S ribosomal protein L29	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	52.385	42.631	3	0.00091747	23184	160513_QHF_FH_JSI11Kac_6	64.103	54.416			0.22443	0.22583	29.989	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29491	0.27917	NaN	1	0	Median	0.17079	0.18268	NaN	1	1	Median	33219000	25908000	7311000	0	0	0	0	0	0	28290000	21325000	6965600	4929100	4583700	345400	29336	1610	27745	182377;182378	246551;246552	246551	1637		2	
LAYINPDLALEEK	1	Unmodified	1487.7872	0.78716026	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	5.23	9	4	2				3	1		4	6	4	5	75.853	73.495	2;3	1.1359E-30	67377	160511_QHF_FH_JSI10i_1	189.72	163.05			0.91208	1.0036	50.677	18	4	Median	1.0926	0.90171	68.375	4	1	Median	0.81208	0.96208	33.172	5	1	Median	1.0604	1.0349	61.62	4	2	Median	0.9887	1.0473	39.685	5	0	Median	4021700000	2005500000	2016200000	905880000	393890000	511990000	1181100000	647900000	533170000	1007700000	483030000	524660000	927020000	480680000	446340000	29337	1386	27746	182379;182380;182381;182382;182383;182384;182385;182386;182387;182388;182389;182390;182391;182392;182393;182394;182395;182396;182397	246553;246554;246555;246556;246557;246558;246559;246560;246561;246562;246563;246564;246565;246566;246567;246568;246569;246570;246571;246572;246573;246574;246575;246576;246577;246578;246579;246580;246581;246582;246583;246584;246585;246586;246587;246588;246589;246590	246574			37	
LAYLQILSEETSVK	1	Unmodified	1592.8661	0.86613887	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	89.998	89.584	2	6.3673E-06	77809	160511_QHF_FH_JSI12i_3	134.98	113.6			0.99058	0.93398	23.99	6	3	Median	1.1319	0.99934	NaN	1	0	Median	0.69878	0.85465	NaN	1	1	Median	0.87204	0.87289	NaN	1	0	Median	1.1252	1.0956	32.648	3	2	Median	245120000	120070000	125050000	32625000	12579000	20046000	43960000	28316000	15644000	56749000	25471000	31278000	111790000	53706000	58083000	29338	1162	27747	182398;182399;182400;182401;182402;182403	246591;246592;246593;246594;246595;246596;246597	246597			7	
LAYMPHTFFIGDHANMFPHLK	1	Unmodified	2486.2028	0.20276269	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	86.425	83.595	5	3.0368E-22	41857	160513_QHF_FH_JSI10Kac_6	142.98	135.36			0.91003	0.99576	16.718	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74297	0.88474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1146	1.1207	NaN	1	0	Median	261380000	134450000	126930000	0	0	0	209000000	112580000	96424000	0	0	0	52383000	21875000	30508000	29339	274	27748	182404;182405	246598;246599;246600;246601	246601			4	
LAYQTDNKK	2	Unmodified	1079.5611	0.56112349	3039	Q6DKK2	TTC19	Tetratricopeptide repeat protein 19, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.6196	8.7171	2	0.0018035	6113	160511_QHF_FH_JSI12i_3	82.452	47.157			0.86771	0.87776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86771	0.87776	NaN	1	1	Median	35246000	17836000	17410000	0	0	0	0	0	0	0	0	0	35246000	17836000	17410000	29340	3039	27749	182406	246602	246602			1	
LAYQVLAEK	1	Unmodified	1033.5808	0.5807963	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	46.479	45.707	2	6.3471E-05	40171	160511_QHF_FH_JSI10i_2	96.948	53.701			0.94616	1.0776	31.145	7	1	Median	1.2801	1.0776	NaN	1	0	Median	0.96994	1.1534	6.0693	2	0	Median	1.0287	1.0281	15.042	2	0	Median	0.56289	0.61195	26.711	2	1	Median	636950000	314940000	322010000	93118000	43829000	49289000	167910000	82523000	85383000	219540000	105200000	114330000	156390000	83384000	73004000	29341	4337	27750	182407;182408;182409;182410;182411;182412;182413	246603;246604;246605;246606;246607;246608	246608			6	
LAYRPPK	1	Unmodified	843.49667	0.49667274	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		15.698	15.036	3	0.0038712	11923	160511_QHF_FH_JSI9i_3	75.311	59.871			1.0005	1.0941	10.197	3	0	Median	1.3488	1.0941	NaN	1	0	Median	0.97684	1.1165	NaN	1	0	Median	1.0005	0.92712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	981570000	487470000	494100000	381120000	172110000	209020000	378250000	197030000	181220000	222200000	118330000	103870000	0	0	0	29342	905	27751	182414;182415;182416	246609;246610;246611	246611			3	
LAYSPTMGLYLGIYMHAPK	1	2 Oxidation (M)	2157.0639	0.06386917	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	2	0	By MS/MS				16	0									1	1				79.572	70.939	3	0.0010373	38425	160513_QHF_FH_JSI9Kac_6	55.589	46.542			0.91462	0.7747	NaN	1	0	Median	0.91462	0.7747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32621000	18192000	14429000	32621000	18192000	14429000	0	0	0	0	0	0	0	0	0	29343	2303	27752	182417	246612;246613	246613		1901;1902	2	
LAYSPTMGLYLGIYMHAPK	1	Unmodified	2125.074	0.074039926	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			87.704	81.013	3	1.0635E-09	44165	160513_QHF_FH_JSI9Kac_6	112.3	94.143			0.7788	0.78977	23.247	3	2	Median	0.7788	0.66516	NaN	1	0	Median	0.77089	0.91224	20.387	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	544250000	289400000	254850000	101720000	50419000	51296000	442540000	238980000	203560000	0	0	0	0	0	0	29344	2303	27752	182418;182419;182420	246614;246615;246616;246617;246618	246615			5	
LAYSSQTAQQK	1	Unmodified	1223.6146	0.61461563	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	15.21	14.387	2	0.00059206	11643	160511_QHF_FH_JSI9i_1	84.213	63.883			2.0552	2.0063	61.103	3	3	Plateau	1.5691	1.2868	84.423	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5109	1.6126	NaN	1	1	Median	100770000	39898000	60877000	57666000	21932000	35734000	0	0	0	0	0	0	43108000	17965000	25143000	29345	4659	27753	182421;182422;182423	246619;246620;246621	246620			3	
LAYTLLNK	1	Unmodified	934.54877	0.54876789	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	51.661	50.532	2	0.019171	44315	160511_QHF_FH_JSI9i_2	46.994	28.189			1.0158	1.2214	61.553	3	1	Plateau	1.2922	1.0884	NaN	1	0	Median	1.0158	1.2214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.34725	0.39888	NaN	1	1	Median	147450000	83271000	64181000	40222000	18347000	21875000	53174000	29635000	23539000	0	0	0	54057000	35290000	18767000	29346	5202	27754	182424;182425;182426	246622;246623;246624	246623			3	
LAYVAAGDLAPINAFIGGLAAQEVMK	1	Oxidation (M)	2618.3778	0.37780975	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	2	3	3	100.98	98.132	3	2.5371E-17	88158	160511_QHF_FH_JSI12i_2	101.3	97.703			0.96983	0.9788	36.331	10	2	Median	1.0604	0.90212	15.064	2	0	Median	0.54349	0.6403	88.145	2	1	Median	1.159	1.1656	24.828	3	0	Plateau	0.90628	1.0162	16.571	3	1	Median	1703200000	886670000	816540000	249160000	118240000	130930000	194930000	103400000	91530000	559940000	307200000	252740000	699180000	357830000	341350000	29347	1208	27755	182427;182428;182429;182430;182431;182432;182433;182434;182435;182436	246625;246626;246627;246628;246629;246630;246631	246626		834	7	
LAYVAAGDLAPINAFIGGLAAQEVMK	1	Unmodified	2602.3829	0.38289512	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.421	3	10								1	4	4	4	102.69	102.6	2;3;4	4.2598E-69	90389	160511_QHF_FH_JSI11i_2	276.26	257.67			0.83756	0.922	24.664	13	4	Median	1.1003	0.93171	NaN	1	0	Median	0.69605	0.83446	19.802	4	2	Median	0.87246	0.88375	17.277	4	0	Median	1.0111	1.1435	35.818	4	2	Median	5566100000	2986700000	2579400000	753370000	355880000	397490000	980570000	592190000	388380000	2681900000	1431100000	1250800000	1150200000	607500000	542690000	29348	1208	27755	182437;182438;182439;182440;182441;182442;182443;182444;182445;182446;182447;182448;182449	246632;246633;246634;246635;246636;246637;246638;246639;246640;246641;246642;246643;246644;246645;246646;246647;246648;246649	246644			18	
LAYVAPTIPR	0	Unmodified	1099.639	0.63897988	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	4.01	3	5	1					1		2	1	3	4	58.306	56.368	2	0.00019798	48786	160511_QHF_FH_JSI11i_2	92.439	77.773			0.82892	0.84795	9.2704	8	7	Median	1.0572	0.89071	1.9871	2	1	Median	0.69229	0.85547	NaN	1	1	Median	0.83078	0.84051	7.876	3	3	Plateau	0.83756	0.91506	12.341	2	2	Median	1032400000	605290000	427100000	172810000	93369000	79443000	185510000	108370000	77142000	421390000	257130000	164270000	252680000	146430000	106250000	29349	227	27756	182450;182451;182452;182453;182454;182455;182456;182457;182458;182459	246650;246651;246652;246653;246654;246655;246656;246657;246658;246659	246658			10	
LAYYSTVQHK	1	Unmodified	1208.619	0.61897272	5029	Q9NVE7	PANK4	Pantothenate kinase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.33	6.13			2						1			2	1	22.399	22.394	3	0.00012788	18433	160511_QHF_FH_JSI12i_3	59.067	49.412			0.88865	0.86562	17.099	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81429	0.76704	NaN	1	0	Median	0.9698	0.97688	NaN	1	0	Median	138690000	68041000	70650000	0	0	0	0	0	0	57890000	30440000	27450000	80802000	37602000	43200000	29350	5029	27757	182460;182461;182462	246660;246661;246662;246663	246662			4	
LAYYYQR	0	Unmodified	975.48142	0.48141661	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	2	3	33.524	29.664	2	0.0021191	25187	160511_QHF_FH_JSI12i_2	113.07	83.734			1.1303	1.1076	42.1	11	0	Median	1.1303	0.8978	66.294	3	0	Median	0.93859	1.159	33.879	3	0	Median	1.1642	1.0817	3.3527	2	0	Median	1.1596	1.1809	14.2	3	0	Median	715540000	336160000	379380000	140780000	69217000	71566000	211670000	105810000	105860000	144250000	53767000	90487000	218830000	107360000	111470000	29351	1929	27758	182463;182464;182465;182466;182467;182468;182469;182470;182471;182472;182473	246664;246665;246666;246667;246668;246669;246670;246671;246672;246673;246674	246664			11	
LCAAAASILGK	1	Unmodified	1073.5903	0.59031513	1336	P30046;A6NHG4	DDT;DDTL	D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	53.574	52.753	2	0.0020676	45658	160511_QHF_FH_JSI11i_2	58.955	44.286			1.1631	1.141	40.119	5	1	Median	1.2981	1.141	NaN	1	0	Median	0.41817	0.52583	NaN	1	1	Median	0.72545	0.7257	NaN	1	0	Median	1.1838	1.2832	9.082	2	0	Median	302940000	156640000	146290000	28134000	15806000	12328000	41244000	24241000	17003000	67579000	41462000	26117000	165980000	75135000	90844000	29352	1336	27759	182474;182475;182476;182477;182478	246675;246676	246675			2	
LCANHRITPDMSLQNMK	1	Unmodified	2027.9703	0.97031991	31;191	A6NKT7;O14715;Q99666	RGPD3;RGPD8;RGPD5	RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	102.62	102.63	2	0.041991	89402	160511_QHF_FH_JSI12i_3	56.359	14.264			0.84357	0.81863	10.915	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82438	0.75782	NaN	1	0	Median	0.86322	0.88431	NaN	1	0	Median	84851000	43926000	40925000	0	0	0	0	0	0	20858000	12478000	8380100	63993000	31448000	32545000	29353	31;191	27760	182479;182480	246677	246677			1	
LCDFNPK	1	Unmodified	892.41129	0.41128813	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		33.199	23.862	2	0.054154	15090	160513_QHF_FH_JSI11Kac_4	50.025	40.554			0.84627	0.90826	14.297	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70918	0.82093	NaN	1	0	Median	1.0099	1.0049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10931000	5661600	5269700	0	0	0	2385500	944890	1440600	8545900	4716800	3829100	0	0	0	29354	930	27761	182481;182482	246678	246678			1	
LCDLTFEQIRK	1	Unmodified	1421.7337	0.7336849	5148	Q9NZC3	GDE1	Glycerophosphodiester phosphodiesterase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		50.946	50.946	3	0.032836	45088	160511_QHF_FH_JSI11i_3	31.228	18.868			1.5562	1.4714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5562	1.4714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35976000	15614000	20362000	0	0	0	0	0	0	35976000	15614000	20362000	0	0	0	29355	5148	27762	182483	246679	246679			1	
LCEGFNEVLK	1	Unmodified	1207.5907	0.59070906	5726	Q9Y6H1	CHCHD2	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.911	53.968	2	4.0024E-05	46209	160511_QHF_FH_JSI12i_2	94.85	69.712			0.59977	0.64633	30.596	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51573	0.52059	NaN	1	1	Median	0.6975	0.80243	NaN	1	0	Median	178490000	112550000	65945000	0	0	0	0	0	0	112300000	76311000	35992000	66189000	36236000	29953000	29356	5726	27763	182484;182485	246680;246681	246680			2	
LCEHKYGNAPR	1	Acetyl (K)	1385.651	0.65101791	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		23.639	14.536	3	0.0074161	9256	160513_QHF_FH_JSI11Kac_6	51.252	40.926			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29357	212	27764	182486	246682	246682	115		1	
LCFHGLSSAVK	1	Unmodified	1217.6227	0.62267789	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	46.62	45.766	3	0.00053248	37650	160511_QHF_FH_JSI9i_3	44.564	33.715			0.9611	0.91787	16.553	4	0	Median	0.99487	0.80951	NaN	1	0	Median	0.92847	1.0744	NaN	1	0	Median	0.86232	0.78157	NaN	1	0	Median	1.0403	1.0407	NaN	1	0	Median	169810000	90145000	79669000	39493000	18797000	20696000	24314000	11945000	12369000	52822000	30246000	22577000	53185000	29157000	24028000	29358	4699	27765	182487;182488;182489;182490	246683;246684	246684			2	
LCFSTAQHAS	0	Unmodified	1120.4971	0.49714303	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.27		4	1				2	1	1	2	2	4	1	33.466	28.801	2	3.6232E-34	24354	160511_QHF_FH_JSI12i_2	207.68	192.24			0.98711	1.0116	34.49	9	0	Median	1.4117	1.2167	26.097	2	0	Median	0.94404	1.1267	30.403	2	0	Median	0.97655	0.96302	50.863	4	0	Median	0.98302	1.0574	NaN	1	0	Median	812530000	391930000	420600000	98004000	35266000	62737000	158750000	70758000	87991000	317830000	168550000	149280000	237950000	117360000	120590000	29359	1063	27766	182491;182492;182493;182494;182495;182496;182497;182498;182499	246685;246686;246687;246688;246689;246690;246691;246692;246693	246687			9	
LCGDTSLNNMQR	0	Unmodified	1407.6235	0.62348253	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.918	29.545	2	0.0017356	26458	160511_QHF_FH_JSI12i_1	60.398	46.1			0.87722	1.5121	29.44	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86404	1.0046	NaN	1	0	Median	0.87722	0.85396	NaN	1	0	Median	1.4393	1.5121	NaN	1	0	Median	278110000	151720000	126390000	0	0	0	87044000	55406000	31638000	86842000	51732000	35110000	104220000	44584000	59641000	29360	127	27767	182500;182501;182502	246694;246695;246696	246694			3	
LCLELLNVGVESK	1	Unmodified	1472.7909	0.79086543	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		90.277	89.76	2	0.00036695	78926	160511_QHF_FH_JSI11i_2	96.229	71.438			0.59212	0.57576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59212	0.57576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14106000	9141700	4964200	0	0	0	0	0	0	14106000	9141700	4964200	0	0	0	29361	2084	27768	182503	246697	246697			1	
LCLGQGADIWAYILQHVHSQR	0	Unmodified	2464.2434	0.24338195	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.796	87.075	4	1.03E-21	49900	160513_QHF_FH_JSI10Kac_6	134.29	117.57			0.77821	0.92447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77821	0.92447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162680000	77824000	84859000	0	0	0	162680000	77824000	84859000	0	0	0	0	0	0	29362	629	27769	182504	246698	246698			1	
LCLQSIAFISR	0	Unmodified	1306.7067	0.70674187	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	83.011	75.299	2	5.1702E-05	42417	160513_QHF_FH_JSI10Kac_6	101.48	87.183			1.0884	1.244	38.98	5	2	Median	1.4441	1.244	NaN	1	0	Median	1.0549	1.2464	5.872	2	2	Median	0.71359	0.65756	NaN	1	0	Median	1.8645	1.9551	NaN	1	0	Median	294020000	153760000	140260000	38858000	13734000	25124000	162290000	88120000	74171000	55329000	32849000	22480000	37537000	19057000	18480000	29363	1890	27770	182505;182506;182507;182508;182509	246699;246700;246701	246701			3	
LCLTLHNNEGSYLAHTQGK	1	Unmodified	2155.048	0.048036185	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	3	1	50.893	50.063	3;4	6.9157E-11	44056	160511_QHF_FH_JSI11i_3	127.44	121.01			1.1068	1.045	46.554	6	2	Median	0.77385	0.62901	74.377	2	1	Median	0.94277	1.0554	NaN	1	0	Median	1.1068	1.0279	0.93818	2	0	Median	1.4247	1.4357	NaN	1	1	Median	596030000	314810000	281210000	65726000	37656000	28069000	103750000	49905000	53844000	344110000	191030000	153090000	82440000	36228000	46213000	29364	2672	27771	182510;182511;182512;182513;182514;182515;182516	246702;246703;246704;246705;246706;246707;246708;246709;246710;246711	246704			10	
LCNDSLPPGTVKL	1	Unmodified	1412.7334	0.73335055	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	73.023	71.737	2	0.049453	61858	160511_QHF_FH_JSI12i_2	37.191	30.063			0.97692	1.097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97692	1.097	NaN	1	0	Median	110310000	55338000	54969000	0	0	0	0	0	0	0	0	0	110310000	55338000	54969000	29365	4214	27772	182517	246712	246712			1	
LCNLEEGSPGSGTYTR	0	Unmodified	1739.7785	0.77846285	5572	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		35.616	35.313	2	2.5424E-05	31719	160511_QHF_FH_JSI11i_1	107.85	55.568			0.93467	0.97109	1.3518	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84845	0.96185	NaN	1	1	Median	1.0297	0.98042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46226000	24604000	21622000	0	0	0	20871000	12124000	8747700	25355000	12480000	12874000	0	0	0	29366	5572	27773	182518;182519;182520	246713;246714;246715	246713			3	
LCNYLSHHLTISPQSGNFR	0	Unmodified	2243.0906	0.090569702	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	65.453	56.505	3;4	2.1238E-09	31044	160513_QHF_FH_JSI10Kac_6	105.5	90.889			0.96362	1.1356	17.579	5	0	Median	1.454	1.2407	NaN	1	0	Median	0.9332	1.0967	4.9336	2	0	Median	0.86566	0.85751	NaN	1	0	Median	1.3165	1.3629	NaN	1	0	Median	151340000	78094000	73242000	17543000	8206400	9336800	105570000	59767000	45799000	7933300	3821000	4112300	20294000	6299800	13994000	29367	4619	27774	182521;182522;182523;182524;182525	246716;246717;246718;246719;246720	246720			5	
LCPGGQLPFLLYGTEVHTDTNK	1	Unmodified	2459.2155	0.21549544	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		85.717	76.397	3	3.0688E-08	42386	160513_QHF_FH_JSI11Kac_6	94.463	74.024			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29368	119	27775	182526	246721	246721			1	
LCPNSTGAEIR	0	Unmodified	1216.587	0.58702067	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	25.944	25.123	2	0.00034451	20969	160511_QHF_FH_JSI11i_2	74.376	58.734			1.2609	1.1347	28.16	5	1	Median	1.3203	1.1347	NaN	1	0	Median	0.90207	1.1183	NaN	1	0	Median	0.81111	0.82112	NaN	1	0	Median	1.4504	1.5692	14.635	2	1	Median	426470000	218060000	208410000	43595000	20862000	22733000	69658000	37971000	31686000	141790000	83952000	57842000	171430000	75280000	96149000	29369	1449	27776	182527;182528;182529;182530;182531	246722;246723;246724;246725;246726;246727;246728	246726			7	
LCQIFSDLNATYR	0	Unmodified	1599.7715	0.77152697	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.585	71.633	2	0.00069328	62777	160511_QHF_FH_JSI11i_2	83.31	63.548			0.4516	0.49214	28.605	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57705	0.60247	NaN	1	1	Median	0.35342	0.40202	NaN	1	1	Median	89965000	62363000	27601000	0	0	0	0	0	0	37252000	23625000	13627000	52713000	38738000	13975000	29370	238	27777	182532;182533	246729;246730	246730			2	
LCQKFGQYNK	2	Acetyl (K)	1326.6391	0.63905624	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		44.361	34.037	2	0.0055142	19311	160513_QHF_FH_JSI11Kac_5	75.109	46.935			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1883800	1883800	0	0	0	0	0	0	0	1883800	1883800	0	0	0	0	29371	2675	27778	182534	246731	246731	2623		1	
LCSAHGVLVPGGFGVR	0	Unmodified	1624.8508	0.85078035	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.993	58.461	3	1.0598E-05	49057	160511_QHF_FH_JSI10i_3	73.91	62.296			1.9686	1.9021	117.21	2	0	Median	5.4428	4.3569	NaN	1	0	Median	0.71204	0.83041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92327000	37566000	54761000	29788000	3938500	25849000	62539000	33627000	28912000	0	0	0	0	0	0	29372	1126	27779	182535;182536	246732;246733;246734;246735	246734			4	
LCSDLMNCLHER	0	Unmodified	1546.6691	0.66905251	5435	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.67	0.471		1	2								1	1	1	49.543	49.146	3	0.020906	43401	160511_QHF_FH_JSI10i_2	28.986	25.808			0.92508	1.0511	31.428	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84647	1.0511	NaN	1	0	Median	0.92508	0.85497	NaN	1	0	Median	1.5205	1.5852	NaN	1	0	Median	101130000	53985000	47142000	0	0	0	19328000	11847000	7480500	44096000	27578000	16518000	37704000	14559000	23144000	29373	5435	27780	182537;182538;182539	246736;246737	246736			1	
LCSGVLGTVVHGK	1	Unmodified	1325.7126	0.71255553	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	46.659	45.562	2;3	3.8928E-07	38194	160511_QHF_FH_JSI10i_3	136.02	91.673			1.113	1.2708	30.162	6	4	Median	1.4406	1.1681	46.96	2	2	Median	1.1034	1.2708	6.6259	2	0	Median	1.0582	0.98104	NaN	1	1	Median	1.8622	1.8696	NaN	1	1	Median	1498900000	647200000	851680000	770490000	292710000	477780000	540340000	264630000	275710000	99440000	51340000	48101000	88605000	38517000	50087000	29374	5717	27781	182540;182541;182542;182543;182544;182545	246738;246739;246740;246741;246742;246743	246740			6	
LCSLFYTNEEVAK	1	Unmodified	1572.7494	0.74939455	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	2	1		62.51	61.687	2	4.1009E-05	53664	160511_QHF_FH_JSI11i_2	114.86	99.597			1.0552	1.3008	34.545	5	2	Median	1.9993	1.695	30.887	2	1	Median	0.93021	1.1379	18.925	2	1	Median	0.85564	0.856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	366990000	164060000	202920000	112420000	37305000	75114000	134890000	71322000	63569000	119680000	55438000	64241000	0	0	0	29375	1556	27782	182546;182547;182548;182549;182550	246744;246745;246746;246747;246748;246749	246747			6	
LCSLLDSEDYNTCEGAFGALQK	1	Unmodified	2490.1043	0.10429001	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.151	85.658	3	0.0022541	78015	160511_QHF_FH_JSI12i_1	42.172	34.55			1.0088	1.0126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0088	1.0126	NaN	1	1	Median	17230000	7913500	9316500	0	0	0	0	0	0	0	0	0	17230000	7913500	9316500	29376	3914	27783	182551	246750	246750			1	
LCSLLLQEHFGEIVEK	1	Unmodified	1913.9921	0.99208444	4441	Q9BUI4	POLR3C	DNA-directed RNA polymerase III subunit RPC3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.222	81.222	3	0.040282	72519	160511_QHF_FH_JSI11i_3	23.683	7.7987			0.82824	0.78353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82824	0.78353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19330000	12271000	7059600	0	0	0	0	0	0	19330000	12271000	7059600	0	0	0	29377	4441	27784	182552	246751	246751			1	
LCTFILK	1	Unmodified	893.50446	0.50446024	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		68.099	58.537	2	0.057659	31715	160513_QHF_FH_JSI11Kac_6	46.37	23.748			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29378	1839	27785	182553	246752	246752			1	
LCTQLEGLQSTVTGHVER	0	Unmodified	2027.0106	0.010588046	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.91	60.773	3	7.6514E-05	53945	160511_QHF_FH_JSI11i_3	64.203	54.281			0.91166	0.89016	36.901	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72121	0.68572	NaN	1	0	Median	1.1524	1.1555	NaN	1	1	Median	172300000	85930000	86366000	0	0	0	0	0	0	83436000	41191000	42245000	88861000	44739000	44121000	29379	3100	27786	182554;182555	246753;246754	246753			2	
LCTSATESEVAR	0	Unmodified	1322.6136	0.61362935	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	24.135	22.138	2	3.4738E-05	19616	160511_QHF_FH_JSI12i_1	105.17	64.178			0.82593	0.8992	31.448	6	1	Median	1.1751	0.97637	NaN	1	0	Median	0.56532	0.66937	51.961	2	1	Median	0.82131	0.81756	3.2417	2	0	Median	1.0922	1.1462	NaN	1	0	Median	751200000	398900000	352310000	115380000	48572000	66810000	159210000	101630000	57575000	232070000	125220000	106840000	244550000	123470000	121080000	29380	1379	27787	182556;182557;182558;182559;182560;182561	246755;246756;246757;246758;246759;246760;246761;246762;246763;246764	246758			10	
LCTVNSVEEK	1	Unmodified	1177.5649	0.56488824	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	22.242	21.915	2	0.015736	19232	160511_QHF_FH_JSI12i_1	51.066	15.621			2.4508	2.4858	0.82246	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5019	2.4714	NaN	1	1	Median	2.4008	2.5003	NaN	1	1	Median	63405000	19921000	43483000	0	0	0	0	0	0	28018000	8244300	19774000	35387000	11677000	23710000	29381	1736;1737	27788	182562;182563	246765;246766	246766			2	
LCVPAMNVNDSVTK	1	Unmodified	1546.7483	0.74834869	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	0				By MS/MS	1	0	1												1	61.841	61.19	2	0.00014055	55608	160511_QHF_FH_JSI12i_1	98.156	66.87			0.85917	0.89843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85917	0.89843	NaN	1	0	Median	163670000	77605000	86060000	0	0	0	0	0	0	0	0	0	163670000	77605000	86060000	29382	389	27789	182564	246767	246767			1	
LCVQNSPQEAR	0	Unmodified	1300.6194	0.61938343	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.342	19.222	2	0.012045	16384	160511_QHF_FH_JSI11i_1	45.368	33.084			0.83101	0.80491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83101	0.80491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35113000	19259000	15853000	0	0	0	0	0	0	35113000	19259000	15853000	0	0	0	29383	1401	27790	182565	246768	246768			1	
LCWEANPEARPTFPGIEEK	1	Unmodified	2243.0681	0.068102925	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		72.914	72.914	3	0.012941	65000	160511_QHF_FH_JSI11i_3	38.888	15.088			0.97541	0.92944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97541	0.92944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36720000	17194000	19526000	0	0	0	0	0	0	36720000	17194000	19526000	0	0	0	29384	2437	27791	182566	246769	246769			1	
LCWFLDEAAAR	0	Unmodified	1350.6391	0.63905624	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	81.419	80.533	2	0.00098656	70833	160511_QHF_FH_JSI11i_2	66.962	42.932			1.2889	1.3389	30.259	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0924	1.081	NaN	1	0	Median	1.5207	1.6583	NaN	1	1	Median	92880000	41815000	51066000	0	0	0	0	0	0	54492000	27039000	27452000	38389000	14775000	23613000	29385	677	27792	182567;182568;182569	246770;246771;246772	246772			3	
LCYDAFTENMAGENQLLER	0	Unmodified	2273.0093	0.0092674174	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1									1	4	2	84.601	84.207	2;3	4.2192E-24	76760	160511_QHF_FH_JSI12i_1	170.52	149.27			1.1322	1.1031	32.134	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2503	1.4887	NaN	1	0	Median	1.0279	0.96946	27.504	3	1	Median	1.2685	1.3265	NaN	1	0	Median	109850000	50246000	59608000	0	0	0	36821000	18277000	18544000	52774000	23311000	29463000	20259000	8658300	11601000	29386	2094	27793	182570;182571;182572;182573;182574;182575;182576	246773;246774;246775;246776;246777;246778;246779;246780;246781;246782;246783	246780			10	
LCYSSDHEK	1	Unmodified	1137.4761	0.47607323	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		4	1					1		1	1	3	1	9.9761	7.712	2;3	0.00015606	6486	160511_QHF_FH_JSI11i_2	88.819	83.337			0.80411	0.98074	39.016	5	1	Median	0.80196	0.70481	NaN	1	0	Median	0.80411	0.98074	NaN	1	0	Median	1.0634	1.0539	60.233	2	1	Median	1.2322	1.4122	NaN	1	0	Median	258420000	138450000	119970000	32386000	15152000	17234000	51332000	28309000	23023000	107470000	58607000	48863000	67229000	36382000	30847000	29387	1188	27794	182577;182578;182579;182580;182581;182582	246784;246785;246786;246787;246788;246789;246790;246791;246792	246789			9	
LCYVALDFEQEMATAASSSSLEK	1	Unmodified	2549.1666	0.16655592	2062;1916	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.26	4.41	6	9	2						2	3	5	5	6	100.34	99.263	2;3	0	86997	160511_QHF_FH_JSI12i_2	473.29	461.37			0.87399	0.99151	18.918	18	3	Median	1.2651	1.0791	3.4984	3	2	Median	0.78263	0.92955	19.146	5	1	Median	0.77475	0.75521	9.2499	5	0	Median	1.0415	1.0899	7.8873	5	0	Median	11247000000	5873700000	5373200000	1692800000	835460000	857320000	2694800000	1553500000	1141400000	3835900000	2095300000	1740600000	3023500000	1389500000	1633900000	29388	1916;2062	27795	182583;182584;182585;182586;182587;182588;182589;182590;182591;182592;182593;182594;182595;182596;182597;182598;182599;182600;182601	246793;246794;246795;246796;246797;246798;246799;246800;246801;246802;246803;246804;246805;246806;246807;246808;246809;246810;246811;246812;246813;246814;246815;246816;246817;246818;246819;246820	246800			28	
LCYVALDFEQEMATAASSSSLEK	1	Oxidation (M)	2565.1615	0.16147054	2062;1916	P60709;Q6S8J3;P63261	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	0				By MS/MS	1	0	1												1	83.64	83.133	3	0.016947	75773	160511_QHF_FH_JSI12i_1	32.548	25.272			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4760300	0	4760300	0	0	0	0	0	0	0	0	0	4760300	0	4760300	29389	1916;2062	27795	182602	246821	246821		1580	1	
LCYVGYNIEQEQK	1	Unmodified	1642.7661	0.76610724	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								1	3	3	4	53.083	52.32	2	3.8332E-17	47567	160511_QHF_FH_JSI12i_1	140.78	114.11			0.77048	0.85927	25.497	8	6	Median	NaN	NaN	NaN	0	0	Median	0.63809	0.77141	11.873	3	3	Median	0.7436	0.71368	35.817	2	1	Median	1.0159	1.0706	24.312	3	2	Median	374410000	200050000	174370000	0	0	0	175930000	102750000	73180000	102300000	52583000	49714000	96183000	44712000	51471000	29390	1940	27796	182603;182604;182605;182606;182607;182608;182609;182610;182611;182612;182613	246822;246823;246824;246825;246826;246827;246828;246829;246830;246831;246832;246833	246827			12	
LCYYIGATDDAATK	1	Unmodified	1560.713	0.71300904	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	51.731	51.146	2	9.4088E-05	46463	160511_QHF_FH_JSI12i_1	111.63	88.257			0.87549	0.9285	30.394	6	5	Median	1.5784	1.3389	NaN	1	1	Median	0.70313	0.83986	25.026	2	2	Median	0.79366	0.74657	20.004	2	2	Median	1.2661	1.2949	NaN	1	0	Median	375380000	211060000	164320000	31204000	11589000	19615000	138300000	87985000	50310000	136390000	76844000	59548000	69491000	34646000	34844000	29391	1849	27797	182614;182615;182616;182617;182618;182619	246834;246835;246836;246837;246838;246839;246840	246837			7	
LDAAMAGHIYVSGSAPSFPR	0	Unmodified	2045.9993	0.99929508	76	CON__Q3ZBS7			yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.989	69.691	3	0.0064261	60301	160511_QHF_FH_JSI12i_3	37.884	19.65		+	0.20601	0.20739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20601	0.20739	NaN	1	1	Median	29414000	25384000	4029500	0	0	0	0	0	0	0	0	0	29414000	25384000	4029500	29392	76	27798	182620	246841	246841			1	
LDADKYENDPELEK	2	Unmodified	1677.7734	0.77336069	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	7									2	1	2	2	37.642	36.994	2;3	0.00023504	33419	160511_QHF_FH_JSI12i_1	56.599	33.18			1.1238	1.038	34.072	7	2	Median	1.0008	0.82794	27.972	2	1	Median	0.88915	1.038	NaN	1	0	Median	0.89369	0.87105	31.812	2	1	Median	1.4272	1.5057	27.771	2	0	Median	1418400000	758450000	659960000	234630000	111600000	123030000	363840000	217620000	146220000	452040000	251860000	200180000	367910000	177370000	190540000	29393	4461	27799	182621;182622;182623;182624;182625;182626;182627	246842;246843;246844;246845;246846;246847	246844			6	
LDADMPEVAVEGPNGK	1	Unmodified	1640.7716	0.77158655	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	3	2	60.019	59.435	2;3	1.8448E-07	54072	160511_QHF_FH_JSI12i_1	141.38	126.41			1.0248	1.0737	6.6019	7	4	Median	1.1622	0.95683	NaN	1	0	Median	0.92869	1.0737	NaN	1	0	Median	1.1538	1.1162	8.3184	3	2	Plateau	1.0247	1.0901	0.5	2	2	Median	667440000	326130000	341310000	121770000	57268000	64504000	98956000	54323000	44634000	248560000	113130000	135420000	198160000	101410000	96745000	29394	2286	27800	182628;182629;182630;182631;182632;182633;182634	246848;246849;246850;246851;246852;246853;246854;246855;246856	246852			8	
LDADPSLQR	0	Unmodified	1013.5142	0.5141733	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.604	26.933	2	0.01177	23840	160511_QHF_FH_JSI11i_1	57.177	30.215		+	1.0609	0.93726	6.474	3	0	Plateau	1.1089	0.92744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.015	0.96681	NaN	1	0	Median	1.006	1.053	NaN	1	0	Median	894920000	399490000	495430000	340300000	154530000	185770000	0	0	0	320860000	128700000	192170000	233760000	116260000	117490000	29395	53;71	27801	182635;182636;182637;182638	246857;246858;246859;246860	246857			4	
LDADYPLR	0	Unmodified	961.4869	0.48689592	343	O43583	DENR	Density-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.16	41.513	2	0.00081956	37279	160511_QHF_FH_JSI10i_1	97.798	79.067			1.0924	1.1024	11.621	4	0	Median	1.5983	1.3296	NaN	1	0	Median	0.85202	1.0137	NaN	1	0	Median	1.1071	1.0773	NaN	1	0	Median	1.0779	1.1281	NaN	1	0	Median	843850000	413720000	430130000	118640000	47463000	71173000	219300000	125390000	93908000	265120000	128680000	136440000	240790000	112180000	128610000	29396	343	27802	182639;182640;182641;182642	246861;246862;246863;246864;246865;246866	246864			6	
LDAEDLVIMQVHDK	1	Oxidation (M)	1640.808	0.80797206	5772				yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	3									1		2		102.16	102.05	2	0.0026681	92782	160511_QHF_FH_JSI11i_1	60.434	37.516	+		1.6711	1.654	13.287	3	0	Plateau	2.5465	2.082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6711	1.654	0	2	0	Median	NaN	NaN	NaN	0	0	Median	1051000000	463820000	587220000	171690000	61832000	109860000	0	0	0	879350000	401990000	477360000	0	0	0	29397	5772	27803	182643;182644;182645	246867	246867		2745	1	
LDAELVK	1	Unmodified	786.44872	0.4487195	5169	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	34.527	33.835	2	0.019071	29716	160511_QHF_FH_JSI9i_1	58.917	19.699			1.0348	0.88142	10.028	5	0	Median	1.0395	0.86835	2.1116	2	0	Median	0.76958	0.91489	NaN	1	0	Median	1.1123	1.0808	NaN	1	0	Median	0.80059	0.84342	NaN	1	0	Median	1609900000	781530000	828380000	419600000	180820000	238790000	416910000	217770000	199140000	475850000	216610000	259240000	297550000	166330000	131220000	29398	5169	27804	182646;182647;182648;182649;182650	246868;246869;246870	246870			3	
LDAENAIVHMGGQWLGGR	0	Unmodified	1922.9421	0.94211455	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	87.419	86.943	3	4.4196E-09	77478	160511_QHF_FH_JSI11i_3	107.57	97.104			0.97792	1.0541	7.9837	6	2	Median	1.3833	1.1603	NaN	1	0	Median	0.85495	1.0049	4.4826	2	1	Median	1.0984	1.0761	0.65027	2	0	Median	0.92519	0.92732	NaN	1	1	Median	688220000	348560000	339660000	73372000	28628000	44744000	125460000	69227000	56236000	367630000	181790000	185840000	121760000	68915000	52845000	29399	2163	27805	182651;182652;182653;182654;182655;182656	246871;246872;246873;246874;246875;246876;246877;246878	246872			8	
LDAEPRPPPTQEAA	0	Unmodified	1490.7365	0.73652168	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.258	33.655	2	1.786E-20	29595	160511_QHF_FH_JSI9i_1	173.04	157.46			0.874	1.039	9.8447	4	0	Linear	1.2588	1.0423	NaN	1	0	Median	0.84764	1.0125	NaN	1	0	Median	0.88054	0.85436	NaN	1	0	Median	0.86751	0.88348	NaN	1	0	Median	716540000	363770000	352770000	190840000	86628000	104210000	185790000	90803000	94983000	163830000	89565000	74265000	176090000	96778000	79312000	29400	5502	27806	182657;182658;182659;182660	246879;246880;246881;246882;246883;246884;246885;246886;246887;246888;246889	246888			11	
LDAFIEALHQEK	1	Unmodified	1412.73	0.72997974	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.019	60.705	3	0.060797	52073	160511_QHF_FH_JSI12i_2	22.491	17.777			3.2777	3.7077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2777	3.7077	NaN	1	1	Median	68254000	22324000	45930000	0	0	0	0	0	0	0	0	0	68254000	22324000	45930000	29401	409	27807	182661	246890	246890			1	
LDALDSFGSTR	0	Unmodified	1180.5724	0.57241646	5286	Q9UGR2	ZC3H7B	Zinc finger CCCH domain-containing protein 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	75.234	74.619	3	0.019493	65796	160511_QHF_FH_JSI9i_2	23.376	9.2576			1.226	1.143	37.495	4	0	Median	1.4209	1.1932	NaN	1	0	Median	0.85895	1.0477	NaN	1	0	Median	1.0578	1.095	NaN	1	0	Median	2.2484	2.332	NaN	1	0	Median	133280000	59257000	74021000	22732000	8193000	14539000	35341000	18156000	17186000	35396000	16022000	19373000	39808000	16886000	22922000	29402	5286	27808	182662;182663;182664;182665	246891;246892;246893	246891			3	
LDALESLR	0	Unmodified	915.50255	0.50254598	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			12.09	11.854	3	0.040447	9699	160511_QHF_FH_JSI10i_1	18.44	0			0.79003	0.89489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79003	0.89489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31970000	16738000	15232000	0	0	0	31970000	16738000	15232000	0	0	0	0	0	0	29403	1807	27809	182666	246894	246894			1	
LDALSNFHFIPKPPVPEIK	2	Unmodified	2161.1936	0.19356144	152	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	93.423	92.926	3;4	4.9224E-05	77663	160511_QHF_FH_JSI10i_3	64.507	54.85			1.022	1.0446	28.92	4	1	Median	1.59	1.3722	NaN	1	0	Median	0.85787	0.99568	NaN	1	0	Median	1.2175	1.096	NaN	1	1	Median	0.66184	0.68555	NaN	1	0	Median	95718000	54308000	41410000	5795600	2936400	2859100	12455000	7003000	5452100	52420000	27537000	24883000	25048000	16831000	8216400	29404	152	27810	182667;182668;182669;182670;182671	246895;246896;246897;246898;246899;246900	246896			6	
LDALVAEEHLTVDAR	0	Unmodified	1650.8577	0.85769944	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.099	62.185	3	0.018122	54055	160511_QHF_FH_JSI11i_2	48.899	32.549			1.218	1.2621	13.245	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4094	1.386	NaN	1	1	Median	1.0526	1.1493	NaN	1	1	Median	88929000	42309000	46620000	0	0	0	0	0	0	55715000	28566000	27149000	33214000	13743000	19471000	29405	5370	27811	182672;182673	246901;246902	246902			2	
LDALWVLLR	0	Unmodified	1097.6597	0.65971533	4757	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		93.663	85.648	2	0.00011777	47873	160513_QHF_FH_JSI11Kac_6	110.12	62.458			0.56882	1.0637	28.542	3	0	Plateau	1.2291	1.0637	NaN	1	0	Median	0.56778	0.67801	NaN	1	0	Median	1.21	1.1507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163180000	78457000	84726000	47968000	23711000	24256000	66046000	35444000	30602000	49168000	19301000	29867000	0	0	0	29406	4757	27812	182674;182675;182676	246903;246904;246905;246906;246907	246903			5	
LDALWVLLRK	1	Unmodified	1225.7547	0.75467834	4757	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.863	78.59	3	1.2245E-06	44803	160513_QHF_FH_JSI10Kac_6	112.75	98.069			0.71345	0.81341	20.079	4	0	Median	1.0534	0.90912	NaN	1	0	Median	0.74281	0.89168	NaN	1	0	Median	0.61164	0.59045	NaN	1	0	Median	0.68525	0.74202	NaN	1	0	Median	192320000	107820000	84495000	48900000	21295000	27604000	94778000	57763000	37014000	22653000	13624000	9029600	25985000	15138000	10847000	29407	4757	27813	182677;182678;182679;182680	246908;246909;246910;246911;246912;246913;246914;246915	246915			8	
LDASESLRK	1	Unmodified	1017.5455	0.54547343	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.44	2	6	7				1	4		3	6	7	4	19.657	16.996	2;3	0.00018543	14323	160511_QHF_FH_JSI11i_3	84.213	44.908			1.0213	1.0859	48.005	20	8	Median	1.4612	1.238	33.842	3	1	Median	0.7877	0.94209	26.633	6	1	Median	1.2036	1.2275	58.72	7	3	Median	0.89852	0.99661	65.902	4	3	Median	6299000000	2917200000	3381800000	477120000	251190000	225930000	963970000	516450000	447530000	2894600000	1078800000	1815700000	1963300000	1070700000	892600000	29408	2155	27814	182681;182682;182683;182684;182685;182686;182687;182688;182689;182690;182691;182692;182693;182694;182695;182696;182697;182698;182699;182700	246916;246917;246918;246919;246920;246921;246922;246923;246924;246925;246926;246927;246928;246929;246930;246931;246932;246933;246934;246935;246936;246937;246938	246916			23	
LDAVNTLLAMAER	0	Unmodified	1415.7442	0.74424959	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.5	0.5		2	2							1	1	1	1	100.57	100.54	2	5.3661E-05	87111	160511_QHF_FH_JSI12i_3	110.08	45.78			0.79766	0.77196	11.571	4	1	Median	0.96909	0.83716	NaN	1	1	Median	0.53104	0.64916	NaN	1	0	Median	0.85378	0.8143	NaN	1	0	Median	0.74522	0.73181	NaN	1	0	Median	138120000	79249000	58871000	43061000	19182000	23879000	32578000	23106000	9472400	29660000	18042000	11618000	32821000	18919000	13902000	29409	5161	27815	182701;182702;182703;182704	246939;246940;246941	246941			3	
LDCQVQGRPQPEVTWR	0	Unmodified	1967.9636	0.96357827	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			45.922	44.367	3	0.0022234	36994	160511_QHF_FH_JSI10i_3	45.723	38.995			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29410	1388	27816	182705	246942	246942			1	
LDDAIEDCTNAVK	1	Unmodified	1462.661	0.66097347	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	41.303	40.848	2	4.7575E-05	36986	160511_QHF_FH_JSI11i_1	78.096	53.242			1.344	1.1642	12.927	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.024	1.1642	NaN	1	1	Median	1.1172	1.0647	NaN	1	1	Median	1.3478	1.3737	NaN	1	1	Median	130050000	62062000	67992000	0	0	0	34773000	17693000	17080000	39184000	18252000	20932000	56097000	26117000	29981000	29411	4294	27817	182706;182707;182708;182709;182710	246943;246944;246945;246946;246947	246944			5	
LDDANDAGGR	0	Unmodified	1002.4367	0.43665126	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	5.8	5.88	3					2					2	2	1	7.3589	4.2842	2	1.5651E-05	4549	160511_QHF_FH_JSI11i_1	100.02	90.776			1.1247	1.1876	43.106	5	0	Median	NaN	NaN	NaN	0	0	Median	0.59534	0.69227	36.564	2	0	Median	1.4602	1.456	18.498	2	0	Median	1.1247	1.1876	NaN	1	0	Median	596000000	294090000	301910000	0	0	0	178580000	110890000	67682000	203240000	88146000	115090000	214190000	95050000	119140000	29412	999	27818	182711;182712;182713;182714;182715	246948;246949;246950;246951	246948			4	
LDDDPPPSTLLK	1	Unmodified	1309.6765	0.67654718	2111	P82914	MRPS15	28S ribosomal protein S15, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.797	52.128	2	0.0094831	47156	160511_QHF_FH_JSI11i_1	48.785	38.262			0.77049	0.76564	12.421	3	1	Median	1.1385	0.94002	NaN	1	0	Median	0.65018	0.76564	NaN	1	1	Median	0.77049	0.75147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	259710000	153500000	106220000	80133000	38905000	41228000	89211000	63226000	25986000	90369000	51364000	39005000	0	0	0	29413	2111	27819	182716;182717;182718	246952;246953;246954;246955;246956	246953			5	
LDDDSERK	1	Unmodified	976.44615	0.44615331	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	2	2	5.0448	4.8162	2;3	1.1745E-20	2668	160511_QHF_FH_JSI11i_1	162.25	95.259			1.1061	1.1991	15.488	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0873	1.2659	NaN	1	0	Median	1.6105	1.5847	NaN	1	1	Median	1.1061	1.1774	NaN	1	0	Median	1036100000	447160000	588890000	0	0	0	376380000	173600000	202780000	237100000	77413000	159690000	422570000	196150000	226420000	29414	3343	27820	182719;182720;182721;182722;182723;182724;182725;182726	246957;246958;246959;246960;246961;246962;246963;246964	246958			8	
LDDFLDLNHK	1	Unmodified	1228.6088	0.60880197	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	59.549	58.798	3	1.5968E-06	50467	160511_QHF_FH_JSI12i_2	89.827	84.728			0.94584	1.0303	29.306	6	1	Median	1.2467	1.1155	NaN	1	0	Median	1.2256	1.4004	48.886	2	1	Median	0.92424	0.90844	3.1478	2	0	Median	0.96054	1.0711	NaN	1	0	Median	395330000	177730000	217610000	46638000	22715000	23922000	103150000	48059000	55092000	146750000	70488000	76267000	98791000	36467000	62324000	29415	3791	27821	182727;182728;182729;182730;182731;182732	246965;246966;246967;246968	246967			4	
LDDGHLNNSLSSPVQADVYFPR	0	Unmodified	2443.1768	0.17680175	2826	Q3ZCW2	LGALSL	Galectin-related protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		76.644	75.957	3	6.2882E-06	66702	160511_QHF_FH_JSI11i_2	63.726	55.226			1.0338	1.1507	25.736	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1137	1.3803	NaN	1	1	Median	0.95967	0.95922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53444000	24501000	28944000	0	0	0	19712000	8308800	11404000	33732000	16192000	17540000	0	0	0	29416	2826	27822	182733;182734	246969;246970	246969			2	
LDDHALTGASDSR	0	Unmodified	1356.627	0.62697123	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	24.181	22.944	2	0.0016919	19097	160511_QHF_FH_JSI12i_2	59.542	41.678			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29417	2304	27823	182735	246971	246971			1	
LDDIFEPVLIPEPK	1	Unmodified	1623.876	0.87597527	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	100.73	100.63	2;3	4.259E-05	91278	160511_QHF_FH_JSI10i_1	77.078	70.498			0.84549	0.92726	28.781	5	1	Median	1.1368	0.92939	NaN	1	0	Median	0.8007	0.89621	4.8166	2	0	Median	0.84549	0.79849	NaN	1	1	Median	1.5637	1.6472	NaN	1	0	Median	129890000	68142000	61752000	17203000	5439100	11764000	51841000	27615000	24226000	24997000	14291000	10706000	35852000	20796000	15055000	29418	2485	27824	182736;182737;182738;182739;182740	246972;246973;246974;246975;246976	246975			4	
LDDLALLEDLEK	1	Unmodified	1385.729	0.72897668	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	100.28	100.18	2	4.265E-06	90729	160511_QHF_FH_JSI10i_1	123.8	106.36			0.72634	0.78258	12.061	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.63729	0.74629	NaN	1	0	Median	0.82784	0.79092	NaN	1	0	Median	0.60403	0.62729	NaN	1	1	Median	144100000	86514000	57586000	0	0	0	42094000	26590000	15504000	48798000	25782000	23016000	53207000	34141000	19066000	29419	2432	27825	182741;182742;182743;182744	246977;246978;246979;246980;246981	246980			5	
LDDLFLK	1	Unmodified	862.48002	0.48001963	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	63.245	62.477	2	0.0080209	56991	160511_QHF_FH_JSI12i_1	85.265	18.272			0.93025	0.97123	5.5861	8	0	Median	1.1708	0.98009	0.79783	2	0	Median	0.844	1.023	10.658	2	0	Median	0.94161	0.94855	2.856	2	0	Median	0.92226	0.99775	5.9538	2	0	Median	2535800000	1354900000	1180900000	408940000	180460000	228480000	624880000	373540000	251340000	828640000	444470000	384170000	673290000	356410000	316880000	29420	1544	27826	182745;182746;182747;182748;182749;182750;182751;182752	246982;246983;246984;246985;246986;246987;246988;246989;246990;246991;246992;246993;246994;246995;246996	246987			15	
LDDLVNWAR	0	Unmodified	1100.5615	0.56145784	495	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	63.971	63.405	2	0.00019108	55224	160511_QHF_FH_JSI11i_2	91.064	91.064			0.99087	1.0029	6.6544	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77902	0.94106	9.0037	2	0	Median	1.0227	0.98962	2.1076	2	0	Median	0.99087	1.057	NaN	1	0	Median	431660000	228120000	203530000	0	0	0	153080000	92161000	60914000	255400000	125720000	129680000	23182000	10247000	12935000	29421	495	27827	182753;182754;182755;182756;182757	246997;246998;246999	246998			3	
LDDLVRPYVHK	1	Unmodified	1353.7405	0.74048484	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							2	3	4	4	40.297	39.661	2;3;4	2.6006E-05	34664	160511_QHF_FH_JSI11i_3	86.313	82.139			0.95016	1.0144	41.098	12	3	Median	1.3632	1.1242	2.9905	2	0	Median	0.79761	0.92222	4.8572	3	0	Median	1.1244	1.1127	16.583	4	0	Median	0.46415	0.47537	87.162	3	3	Median	2219600000	1116700000	1102900000	89182000	40018000	49164000	400930000	168920000	232010000	860000000	452400000	407600000	869450000	455360000	414090000	29422	542	27828	182758;182759;182760;182761;182762;182763;182764;182765;182766;182767;182768;182769;182770	247000;247001;247002;247003;247004;247005;247006;247007;247008;247009;247010;247011;247012;247013;247014	247004			15	
LDDLVSTGK	1	Unmodified	946.49713	0.49712625	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.17	30.598	2	0.0084411	27514	160511_QHF_FH_JSI12i_1	52.255	23.106			1.3298	1.4046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3298	1.4046	NaN	1	0	Median	142730000	75285000	67450000	0	0	0	0	0	0	0	0	0	142730000	75285000	67450000	29423	3828	27829	182771	247015	247015			1	
LDDPLHLR	0	Unmodified	977.52943	0.52942943	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	47.178	46.197	3	0.0035137	40338	160511_QHF_FH_JSI9i_2	45.081	21.653			1.1076	1.1918	5.4133	4	1	Median	1.4407	1.2509	NaN	1	0	Median	0.95073	1.2129	NaN	1	0	Median	1.1054	1.1026	NaN	1	1	Median	1.1099	1.1711	NaN	1	0	Median	70658000	35638000	35020000	14917000	4886200	10031000	13607000	8162100	5444900	25687000	14605000	11082000	16447000	7983900	8462800	29424	481	27830	182772;182773;182774;182775;182776	247016;247017;247018;247019;247020;247021;247022;247023	247018			8	
LDDPSCPRPECYR	0	Unmodified	1663.7083	0.70827479	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	27.707	26.601	3	0.027753	22214	160511_QHF_FH_JSI12i_2	34.179	28.912			1.1433	1.321	42.034	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81541	0.98132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.603	1.7782	NaN	1	0	Median	59730000	25001000	34729000	0	0	0	25748000	14117000	11631000	0	0	0	33982000	10884000	23098000	29425	1508	27831	182777;182778	247024;247025	247024			2	
LDDSFVR	0	Unmodified	850.41848	0.418482	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	34.363	33.719	2	0.023698	30552	160511_QHF_FH_JSI12i_1	55.441	21.703			1.1711	1.0535	20.816	6	0	Median	1.2691	1.0535	0.24977	2	0	Median	0.77804	0.89973	NaN	1	0	Median	1.3203	1.2923	28.458	2	0	Median	0.86749	0.89006	NaN	1	0	Median	821570000	414640000	406920000	220480000	123520000	96959000	202430000	107330000	95097000	264770000	121930000	142830000	133890000	61858000	72036000	29426	4294	27832	182779;182780;182781;182782;182783;182784	247026	247026			1	
LDDTPSGAGKFPAGHSVIQLAR	1	Acetyl (K)	2278.1706	0.17059416	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.471								1	2		1	1	1	75.137	66.073	3	5.7564E-11	34474	160513_QHF_FH_JSI12Kac_6	96.591	80.648			1.2999	1.5306	29.458	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2999	1.5306	NaN	1	0	Median	2.4154	2.3772	NaN	1	0	Median	1.3023	1.359	NaN	1	0	Median	80212000	39044000	41168000	0	0	0	35798000	19971000	15827000	9406700	3563300	5843400	35007000	15510000	19497000	29427	4851	27833	182785;182786;182787	247027;247028;247029;247030	247028	3252		4	
LDDTYIK	1	Unmodified	866.43855	0.43854874	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		29.876	29.271	2	0.050044	25979	160511_QHF_FH_JSI10i_1	46.016	20.189			1.3441	1.3011	6.6291	3	0	Median	1.4749	1.2207	NaN	1	0	Median	1.1721	1.3937	NaN	1	0	Median	1.3441	1.3011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	536540000	234350000	302180000	195490000	93394000	102100000	179920000	91634000	88290000	161120000	49322000	111800000	0	0	0	29428	4294	27834	182788;182789;182790	247031	247031			1	
LDDTYSFQVINK	1	Unmodified	1441.7089	0.70890994	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		62.74	62.328	2	0.0030534	56583	160511_QHF_FH_JSI11i_1	67.726	46.574			0.36628	0.38355	39.889	2	2	Median	NaN	NaN	NaN	0	0	Median	0.45152	0.50853	NaN	1	1	Median	0.29713	0.28929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68441000	44175000	24267000	0	0	0	34009000	20648000	13361000	34432000	23527000	10905000	0	0	0	29429	4733	27835	182791;182792	247032;247033	247032			2	
LDDYASAFQGHDVGFCCLGTTR	0	Unmodified	2489.074	0.073992939	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	75.718	74.78	3	8.1201E-06	65689	160511_QHF_FH_JSI11i_2	72.99	60.312			1.2163	1.2754	39.458	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94606	0.96485	NaN	1	1	Median	1.5638	1.6858	NaN	1	1	Median	60121000	28627000	31494000	0	0	0	0	0	0	27846000	17593000	10253000	32275000	11034000	21241000	29430	4448	27836	182793;182794	247034;247035;247036	247036			3	
LDDYQER	0	Unmodified	937.41412	0.4141249	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.28	10.88	2	0.013376	8687	160511_QHF_FH_JSI12i_1	67.903	27.7			1.0895	1.0142	14.048	4	0	Median	1.087	0.90836	NaN	1	0	Median	0.8122	0.96628	NaN	1	0	Median	1.092	1.0646	NaN	1	0	Median	1.1809	1.2537	NaN	1	0	Median	980340000	437910000	542430000	208200000	85783000	122420000	262190000	126300000	135890000	258880000	129360000	129520000	251070000	96466000	154610000	29431	2536	27837	182795;182796;182797;182798	247037;247038;247039	247037			3	
LDEAEDDFKK	2	Unmodified	1208.5561	0.55609769	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	22.43	22.069	3	0.0027944	19502	160511_QHF_FH_JSI12i_1	54.471	29.616			2.0289	2.1593	81.925	4	4	Median	NaN	NaN	NaN	0	0	Median	2.27	2.6811	NaN	1	1	Median	2.5124	2.4488	NaN	1	1	Median	0.90492	0.9386	100.04	2	2	Median	245980000	116670000	129310000	0	0	0	46000000	21560000	24441000	53087000	21349000	31738000	146890000	73760000	73133000	29432	2373	27838	182799;182800;182801;182802	247040;247041;247042;247043;247044	247042			5	
LDEALEDYK	1	Unmodified	1094.5132	0.51317025	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.615	39.312	2	0.00095543	35447	160511_QHF_FH_JSI11i_1	82.749	57.013			0.70822	0.69589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70822	0.69589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	119610000	58024000	61587000	0	0	0	0	0	0	119610000	58024000	61587000	0	0	0	29433	4293	27839	182803	247045	247045			1	
LDEFGEQLSK	1	Unmodified	1164.5663	0.56626845	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	45.141	44.208	2	0.0010829	39219	160511_QHF_FH_JSI9i_1	79.148	37.7			0.82218	0.75495	6.3673	2	2	Median	0.95082	0.78971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71095	0.72171	NaN	1	1	Median	227460000	137770000	89691000	98348000	59346000	39001000	0	0	0	0	0	0	129110000	78425000	50689000	29434	1103	27840	182804;182805	247046;247047	247047			2	
LDEGWVPLEIMIK	1	Unmodified	1541.8164	0.8163519	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	1	4	1	101.85	101.75	2	9.1035E-17	89492	160511_QHF_FH_JSI11i_2	135.99	87.192			1.0724	1.0503	24.134	5	3	Median	1.0724	0.92008	NaN	1	1	Median	0.84815	1.0503	NaN	1	0	Median	0.92615	0.89933	31.306	2	2	Median	1.2533	1.3811	NaN	1	0	Median	1641900000	944910000	697040000	192400000	94288000	98115000	328530000	221770000	106770000	521190000	267500000	253690000	599820000	361350000	238470000	29435	840	27841	182806;182807;182808;182809;182810;182811;182812;182813	247048;247049;247050;247051;247052;247053;247054;247055;247056;247057	247055			10	
LDEIYVAGLVAHSDLDER	0	Unmodified	2014.0007	0.0007348666	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		7								1	3	1	2	84.309	83.59	3	1.4217E-06	72420	160511_QHF_FH_JSI12i_2	97.095	91.63			1.1926	1.2587	21.525	4	1	Median	1.8764	1.5906	NaN	1	1	Median	0.77463	0.95682	NaN	1	0	Median	1.355	1.3482	NaN	1	0	Median	1.0497	1.1752	NaN	1	0	Median	209990000	99758000	110230000	52323000	20797000	31526000	30978000	18405000	12573000	56454000	26628000	29826000	70232000	33928000	36304000	29436	423	27842	182814;182815;182816;182817;182818;182819;182820	247058;247059;247060;247061;247062	247058			5	
LDELEELLTNNR	0	Unmodified	1457.7362	0.73618733	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		80.711	80.053	2	9.0189E-05	70359	160511_QHF_FH_JSI11i_2	108.7	70.394			0.86567	0.98875	26.152	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9715	1.1896	NaN	1	0	Median	0.77138	0.82182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58802000	33111000	25691000	0	0	0	20186000	10010000	10177000	38616000	23101000	15514000	0	0	0	29437	497	27843	182821;182822;182823	247063;247064;247065;247066	247063			4	
LDELKLK	2	Unmodified	857.52222	0.52221879	4040	Q96EA4	SPDL1	Protein Spindly	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	22.464	21.232	3	0.017584	17449	160511_QHF_FH_JSI10i_3	47.067	10.046			1.0476	1.201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0476	1.201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126750000	75114000	51633000	0	0	0	126750000	75114000	51633000	0	0	0	0	0	0	29438	4040	27844	182824;182825;182826	247067;247068;247069	247068			3	
LDELQASDVSVK	1	Unmodified	1302.6667	0.66671078	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	45.73	45.104	2	4.7361E-16	41057	160511_QHF_FH_JSI12i_1	163.12	130.23			0.89821	0.9124	14.252	5	2	Median	0.99349	0.81271	NaN	1	0	Median	0.73314	0.86839	25.469	2	2	Median	0.92206	0.9124	NaN	1	0	Median	0.89821	0.96497	NaN	1	0	Median	2251000000	1196600000	1054400000	448030000	190710000	257310000	969550000	554690000	414860000	434590000	239530000	195070000	398830000	211680000	187150000	29439	1016	27845	182827;182828;182829;182830;182831	247070;247071;247072;247073;247074;247075;247076	247073			7	
LDELYGTWRK	1	Unmodified	1279.6561	0.65608651	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	45.447	44.938	2;3	2.1455E-05	37655	160511_QHF_FH_JSI10i_3	74.944	44.072			0.53344	0.51836	56.577	4	3	Median	NaN	NaN	NaN	0	0	Median	1.2119	1.3686	NaN	1	0	Median	0.57604	0.54194	NaN	1	1	Median	0.42615	0.42821	20.729	2	2	Median	1542700000	1042800000	499870000	0	0	0	130050000	44577000	85472000	404230000	280190000	124040000	1008400000	718060000	290360000	29440	1457	27846	182832;182833;182834;182835;182836	247077;247078;247079;247080;247081	247079			5	
LDEMEFNPVQQPQLNEK	1	Unmodified	2057.9728	0.97280556	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	70.436	69.892	2;3	1.0564E-07	63198	160511_QHF_FH_JSI10i_1	162.32	149.34			0.92504	0.95601	4.1159	8	0	Median	1.1699	0.96837	0.92466	2	0	Median	0.82335	0.9659	1.7827	2	0	Median	0.95899	0.91928	5.8691	2	0	Median	0.88126	0.90702	3.4942	2	0	Median	647630000	343950000	303690000	153070000	67548000	85522000	160080000	92819000	67258000	161920000	89598000	72322000	172570000	93982000	78585000	29441	5543	27847	182837;182838;182839;182840;182841;182842;182843;182844	247082;247083;247084;247085;247086;247087;247088;247089;247090;247091;247092;247093	247091			12	
LDEREAGITEK	1	Unmodified	1259.6357	0.635745	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.89	6	7	3				2			4	5	4	5	22.094	20.527	2;3	1.9007E-05	16876	160511_QHF_FH_JSI12i_2	81.92	68.24			1.1746	1.1663	40.402	18	2	Median	1.3251	1.1168	15.876	4	0	Median	1.0174	1.2166	40.734	5	1	Median	1.2277	1.2476	76.528	4	1	Median	0.96749	1.0634	15.886	5	0	Median	8152300000	3872700000	4279600000	1537300000	579360000	957910000	2021100000	1031900000	989170000	2217000000	1070700000	1146300000	2376900000	1190700000	1186200000	29442	1908	27848	182845;182846;182847;182848;182849;182850;182851;182852;182853;182854;182855;182856;182857;182858;182859;182860;182861;182862	247094;247095;247096;247097;247098;247099;247100;247101;247102;247103;247104;247105;247106;247107;247108;247109;247110;247111;247112;247113;247114;247115;247116;247117	247096			24	
LDETGNLMISEGHFASETIR	0	Unmodified	2219.0528	0.052846792	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.318	70.025	3	0.0023431	60507	160511_QHF_FH_JSI12i_2	46.35	39.626			2.0839	2.3399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0839	2.3399	NaN	1	1	Median	148770000	26663000	122100000	0	0	0	0	0	0	0	0	0	148770000	26663000	122100000	29443	2470	27849	182863	247118	247118			1	
LDETSGWLSVLHR	0	Unmodified	1511.7732	0.77324153	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	76.855	76.251	3	6.9371E-05	67929	160511_QHF_FH_JSI11i_3	59.294	46.314			0.944	1.0204	12.887	4	0	Median	NaN	NaN	NaN	0	0	Median	0.76508	0.89503	15.2	2	0	Median	1.1298	1.0623	NaN	1	0	Median	1.0373	1.0448	NaN	1	0	Median	146000000	85293000	60706000	0	0	0	29988000	19979000	10009000	59120000	30186000	28934000	56891000	35128000	21763000	29444	401	27850	182864;182865;182866;182867	247119;247120;247121;247122;247123;247124	247119			5	
LDEYIAIAK	1	Unmodified	1034.5648	0.56481189	5371;5216	Q9P2K3;Q9UKL0	RCOR3;RCOR1	REST corepressor 3;REST corepressor 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.353	51.858	2	0.0041286	46917	160511_QHF_FH_JSI11i_1	68.224	42.487			0.46346	0.46985	7.8157	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.43021	0.50069	NaN	1	1	Median	0.46346	0.4409	NaN	1	1	Median	0.49568	0.50833	NaN	1	1	Median	403850000	279850000	124000000	0	0	0	137380000	94656000	42727000	154590000	106120000	48469000	111880000	79076000	32806000	29445	5216;5371	27851	182868;182869;182870	247125;247126;247127	247125			3	
LDFDGLPSGIGK	1	Unmodified	1217.6292	0.62920306	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		75.631	75.119	2	0.0036836	66850	160511_QHF_FH_JSI9i_1	64.82	30.567			0.92837	0.86428	12.343	3	3	Median	0.92837	0.74606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95142	0.90775	6.9397	2	2	Median	NaN	NaN	NaN	0	0	Median	163490000	86248000	77240000	39399000	22596000	16804000	0	0	0	124090000	63653000	60436000	0	0	0	29446	2344	27852	182871;182872;182873	247128;247129;247130	247130			3	
LDFDLEPEPPPAPPR	0	Unmodified	1688.841	0.84098675	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		78.53	77.97	2;3	0.00022908	69141	160511_QHF_FH_JSI9i_1	103.35	86.717			1.0514	1.0047	126.33	4	1	Median	0.37273	0.30069	175.53	2	1	Median	0.85775	0.97025	NaN	1	0	Median	1.3029	1.2417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	318510000	258470000	60044000	255770000	224840000	30934000	30018000	19308000	10710000	32718000	14317000	18401000	0	0	0	29447	2732	27853	182874;182875;182876;182877	247131;247132;247133;247134	247134			4	
LDFEEFMK	1	Unmodified	1057.479	0.47903335	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		83.634	83.133	2	0.031143	73136	160511_QHF_FH_JSI11i_2	41.429	21.793			0.8697	0.91796	6.7302	4	0	Median	1.0084	0.90161	NaN	1	0	Median	0.75236	0.87776	8.8751	2	0	Median	0.96973	0.9628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	177050000	90784000	86262000	46608000	18916000	27693000	66623000	37201000	29422000	63815000	34668000	29147000	0	0	0	29448	3071	27854	182878;182879;182880;182881	247135	247135			1	
LDFEGPDAK	1	Unmodified	990.46583	0.46582612	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.03	38.409	2	3.6513E-06	34833	160511_QHF_FH_JSI12i_1	122.13	94.61			1.1752	1.1632	20.337	4	2	Median	1.2824	1.071	NaN	1	0	Median	1.0769	1.2634	NaN	1	1	Median	1.431	1.3977	NaN	1	1	Median	0.83608	0.87805	NaN	1	0	Median	1128600000	552570000	576040000	209120000	92073000	117050000	251910000	121480000	130430000	350120000	169820000	180300000	317460000	169200000	148260000	29449	2286	27855	182882;182883;182884;182885	247136;247137;247138;247139;247140;247141;247142	247138			7	
LDFGNSQGK	1	Unmodified	964.46141	0.46140945	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	1	2	3	25.738	23.751	2	0.00045216	20960	160511_QHF_FH_JSI10i_1	80.438	35.746			1.0004	0.99779	33.787	7	3	Median	0.94054	0.77769	NaN	1	1	Median	0.9214	1.0734	NaN	1	0	Median	1.0071	0.98983	1.1337	2	0	Median	1.154	1.2255	43.219	3	2	Median	914010000	393340000	520670000	153020000	67535000	85484000	169350000	80226000	89127000	250730000	86137000	164590000	340900000	159440000	181470000	29450	494	27856	182886;182887;182888;182889;182890;182891;182892	247143;247144;247145;247146;247147;247148;247149;247150;247151;247152	247150			10	
LDFHEAQQK	1	Unmodified	1114.5407	0.5407224	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		22.52	21.828	2;3	0.023691	18827	160511_QHF_FH_JSI10i_2	34.803	27.872			0.98809	1.0983	67.53	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.75214	0.94481	91.271	2	2	Median	0.66573	0.66962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66199000	36306000	29893000	0	0	0	47598000	25164000	22434000	18601000	11142000	7459100	0	0	0	29451	2584	27857	182893;182894;182895	247153;247154;247155	247154			3	
LDFLEGDQK	1	Unmodified	1063.5186	0.51858998	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.667	50.994	2	3.5787E-05	46287	160511_QHF_FH_JSI12i_1	99.802	56.556			0.73263	0.7466	6.3325	4	0	Linear	0.79204	0.66065	NaN	1	0	Median	0.58962	0.68433	NaN	1	0	Median	0.78818	0.76433	NaN	1	0	Median	0.68099	0.7193	NaN	1	0	Median	742940000	454250000	288690000	144050000	86789000	57260000	168390000	112920000	55468000	217820000	135430000	82393000	212670000	119100000	93569000	29452	4322	27858	182896;182897;182898;182899	247156;247157;247158;247159;247160;247161;247162	247159			7	
LDFLRPYTVPNK	1	Unmodified	1461.798	0.79799972	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	2	2	65.951	65.153	2;3	7.4655E-11	57736	160511_QHF_FH_JSI11i_3	154.24	127.73			0.84168	0.88469	7.3165	7	0	Median	1.1336	0.94293	9.0162	2	0	Median	0.7698	0.9127	5.498	2	0	Median	0.89112	0.8781	7.1963	2	0	Median	0.80501	0.81456	NaN	1	0	Median	1474100000	758140000	715960000	271940000	114380000	157550000	280030000	155740000	124290000	284660000	151190000	133470000	637470000	336830000	300640000	29453	4267	27859	182900;182901;182902;182903;182904;182905;182906;182907	247163;247164;247165;247166;247167;247168;247169;247170;247171;247172;247173;247174;247175;247176;247177	247163			15	
LDFLRPYTVPNKK	2	Unmodified	1589.893	0.89296274	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		57.034	55.795	3;4	0.0023109	45838	160511_QHF_FH_JSI9i_3	51.726	38.959			0.67459	0.65917	3.1901	5	4	Median	0.77187	0.6387	5.2394	2	1	Median	0.58024	0.66141	0.48068	2	2	Median	0.67459	0.64342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	879750000	486140000	393610000	178320000	107730000	70598000	281960000	151100000	130860000	419470000	227310000	192150000	0	0	0	29454	4267	27860	182908;182909;182910;182911;182912	247178;247179;247180;247181;247182;247183	247181			6	
LDFNLIR	0	Unmodified	889.50215	0.50215205	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	70.716	70.074	2	0.00034728	60339	160511_QHF_FH_JSI12i_2	135.87	49.779			1.1555	1.1176	9.6262	6	0	Median	1.2093	1.0199	NaN	1	0	Median	0.79162	0.9768	NaN	1	0	Median	1.1555	1.1286	2.3932	2	0	Median	1.1319	1.2029	9.4014	2	0	Median	1541600000	839250000	702310000	216580000	102120000	114460000	332450000	215010000	117450000	535490000	302840000	232650000	457040000	219280000	237760000	29455	1381	27861	182913;182914;182915;182916;182917;182918	247184;247185;247186;247187;247188;247189;247190;247191	247186			8	
LDFNPDRYLQDNPASGEK	1	Unmodified	2077.9705	0.97049737	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	70.674	70.525	3	1.1821E-05	62846	160511_QHF_FH_JSI11i_3	86.8	70.306			1.2694	1.2236	5.1392	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3745	1.2689	NaN	1	0	Median	1.1724	1.1799	NaN	1	0	Median	121050000	52230000	68817000	0	0	0	0	0	0	69039000	21996000	47043000	52008000	30234000	21775000	29456	2771	27862	182919;182920	247192;247193;247194;247195	247192			4	
LDFNTDEEK	1	Unmodified	1109.4877	0.48768378	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.106	33.503	2	0.0022076	29835	160511_QHF_FH_JSI10i_1	74.941	51.898			0.79582	0.80764	38.9	4	1	Median	0.61476	0.51097	NaN	1	0	Median	1.0788	1.2666	NaN	1	1	Median	0.94651	0.93344	NaN	1	0	Median	0.66912	0.69879	NaN	1	0	Median	627010000	323960000	303040000	142390000	63589000	78805000	158370000	87866000	70502000	178590000	95745000	82842000	147660000	76763000	70895000	29457	1532	27863	182921;182922;182923;182924	247196;247197;247198	247198			3	
LDFSDTMVQQK	1	Unmodified	1310.6177	0.61765209	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	56.546	55.992	2	8.0088E-08	49675	160511_QHF_FH_JSI9i_1	125.48	102.05			0.98005	0.88425	32.01	5	4	Median	1.0758	0.88425	NaN	1	0	Median	0.71267	0.84871	46.499	2	2	Median	1.0939	1.0733	36.586	2	2	Median	NaN	NaN	NaN	0	0	Median	667800000	351920000	315880000	169930000	85926000	84006000	260420000	151900000	108520000	237450000	114100000	123350000	0	0	0	29458	2732	27864	182925;182926;182927;182928;182929;182930	247199;247200;247201;247202;247203;247204;247205	247204			7	
LDFSLQPETGPGNLIDPIHEFK	1	Unmodified	2466.2431	0.2430904	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			18.962	18.12	4	0.043209	15129	160511_QHF_FH_JSI9i_2	20.439	12.151			7.1885	7.3289	57.361	2	2	Median	5.7227	4.8852	NaN	1	1	Median	9.0296	10.995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172250000	10134000	162110000	87702000	6701300	81001000	84546000	3432500	81114000	0	0	0	0	0	0	29459	2910	27865	182931;182932	247206;247207	247206			2	
LDFTVEHDSLK	1	Unmodified	1302.6456	0.6455814	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	51.806	50.968	3	0.0016542	43509	160511_QHF_FH_JSI12i_2	54.7	38.81			0.79996	0.8108	10.609	3	0	Median	0.96929	0.85591	NaN	1	0	Median	0.57802	0.69744	NaN	1	0	Median	0.79996	0.8108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135300000	78948000	56351000	32963000	14960000	18003000	43056000	30537000	12519000	59280000	33451000	25829000	0	0	0	29460	2638;2895	27866	182933;182934;182935;182936	247208;247209;247210	247208			3	
LDFVCSFLQK	1	Unmodified	1255.6271	0.62709457	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			87.736	87.18	2	0.036564	77401	160511_QHF_FH_JSI10i_2	45.997	34.634			0.54807	0.66625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54807	0.66625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14765000	8752900	6011900	0	0	0	14765000	8752900	6011900	0	0	0	0	0	0	29461	2587	27867	182937	247211	247211			1	
LDFYQHSWLPAR	0	Unmodified	1531.7572	0.75719754	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	3	3	1	2	72.17	70.643	2;3	4.8272E-08	63017	160511_QHF_FH_JSI11i_3	132.59	117.49			0.95433	1.0152	12.758	8	2	Median	1.1388	0.96281	20.301	2	0	Median	0.71968	0.84038	14.865	3	2	Plateau	1.233	1.1451	NaN	1	0	Median	0.92544	0.95239	5.3249	2	0	Median	1194500000	603280000	591180000	166950000	67250000	99697000	394550000	210800000	183750000	384950000	185030000	199920000	248010000	140200000	107820000	29462	4834	27868	182938;182939;182940;182941;182942;182943;182944;182945;182946	247212;247213;247214;247215;247216;247217;247218;247219;247220;247221;247222	247212			9	
LDGAHAPELTK	1	Unmodified	1150.5982	0.59823728	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.09	26.726	3	0.05829	22488	160511_QHF_FH_JSI11i_2	28.283	18.85			0.61335	0.60743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61335	0.60743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43916000	26663000	17253000	0	0	0	0	0	0	43916000	26663000	17253000	0	0	0	29463	595	27869	182947	247223	247223			0	
LDGEASINNRK	1	Unmodified	1215.6208	0.62076364	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.43		6	6					4		3	5	5	3	14.056	11.328	2;3	5.5163E-06	9341	160511_QHF_FH_JSI12i_3	99.283	60.135			0.89991	0.87902	25.01	15	3	Median	1.391	1.1815	43.899	3	1	Plateau	0.82954	1.0044	15.511	4	1	Median	0.92673	0.87902	29.427	5	1	Median	0.83995	0.86474	10.058	3	0	Median	2368300000	1282400000	1086000000	317010000	128060000	188950000	529960000	324570000	205400000	1085300000	598680000	486660000	436010000	231040000	204960000	29464	694	27870	182948;182949;182950;182951;182952;182953;182954;182955;182956;182957;182958;182959;182960;182961;182962;182963	247224;247225;247226;247227;247228;247229;247230;247231;247232;247233;247234;247235;247236;247237;247238;247239;247240;247241;247242;247243;247244;247245;247246;247247	247247			24	
LDGEIIPHIPANQEVLNK	1	Unmodified	1999.0738	0.07384023	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.639	3	10	4							5	3	4	5	73.009	72.216	2;3	2.5401E-07	63550	160511_QHF_FH_JSI9i_2	107.63	104.58			0.89514	0.99708	23.136	17	6	Median	0.89274	0.75623	32.856	5	4	Median	0.82739	1.06	5.6952	3	0	Median	1.2697	1.2595	15.693	4	0	Linear	1.0413	1.1642	17.818	5	2	Median	1545600000	774490000	771080000	238430000	112660000	125770000	398250000	219760000	178490000	492570000	219760000	272810000	416310000	222310000	194000000	29465	1356	27871	182964;182965;182966;182967;182968;182969;182970;182971;182972;182973;182974;182975;182976;182977;182978;182979;182980	247248;247249;247250;247251;247252;247253;247254;247255;247256;247257;247258;247259;247260;247261;247262;247263;247264;247265;247266;247267;247268;247269;247270;247271;247272;247273	247259			26	
LDGFPLLR	0	Unmodified	929.53345	0.53345218	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	76.611	75.618	2	0.04478	67232	160511_QHF_FH_JSI10i_2	47.067	17.729			1.3746	1.6053	42.913	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7808	2.1744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.061	1.1851	NaN	1	0	Median	91144000	36287000	54857000	0	0	0	54618000	19976000	34642000	0	0	0	36525000	16311000	20215000	29466	937	27872	182981;182982	247274;247275	247275			2	
LDGFSVLMR	0	Unmodified	1036.5376	0.53755128	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.563	73.617	2	7.637E-05	63583	160511_QHF_FH_JSI12i_2	95.815	75.116			1.0061	1.0647	4.1116	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0299	1.0342	NaN	1	0	Median	0.98291	1.0961	NaN	1	0	Median	239120000	127810000	111310000	0	0	0	0	0	0	131860000	73404000	58457000	107250000	54401000	52853000	29467	5159	27873	182983;182984	247276;247277;247278	247276			3	
LDGGIEPYRLPEVIQK	1	Unmodified	1825.9938	0.993799	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	74.527	73.266	3	0.02616	63211	160511_QHF_FH_JSI12i_2	34.909	16.807			0.91299	0.97848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91299	0.97848	NaN	1	0	Median	40384000	19093000	21291000	0	0	0	0	0	0	0	0	0	40384000	19093000	21291000	29468	5371	27874	182985	247279	247279			1	
LDGKLIDPK	2	Acetyl (K)	1039.5914	0.59136099	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		56.359	46.864	2	0.032402	24400	160513_QHF_FH_JSI10Kac_3	47.603	15.668			0.63575	0.67673	61.984	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87845	1.049	NaN	1	0	Median	0.4601	0.43658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4627300	2956900	1670400	0	0	0	2644900	1489600	1155300	1982400	1467300	515070	0	0	0	29469	230	27875	182986;182987	247280	247280			1	
LDGLQQR	0	Unmodified	828.44537	0.44536545	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	15.855	15.375	2	0.049359	12899	160511_QHF_FH_JSI10i_1	43	7.8947			0.93255	0.90378	15.781	6	0	Median	1.31	1.0908	25.07	2	0	Median	0.72898	0.85484	NaN	1	0	Median	0.93255	0.9143	3.1666	2	0	Median	0.82476	0.86682	NaN	1	0	Median	606090000	313430000	292660000	146720000	67037000	79684000	141120000	72376000	68746000	195810000	104720000	91090000	122440000	69297000	53144000	29470	4260	27876	182988;182989;182990;182991;182992;182993	247281	247281			1	
LDGLVETPTGYIESLPR	0	Unmodified	1858.9676	0.96764382	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.797	9	8	6							7	5	5	6	89.54	88.962	2;3	7.179E-98	80648	160511_QHF_FH_JSI10i_1	300.55	247.97			0.93115	0.98398	24.004	20	1	Plateau	1.1427	0.94169	40.344	6	1	Median	0.7193	0.89024	18.499	5	0	Median	0.98975	0.95866	13.69	5	0	Median	0.90919	1.0239	4.439	4	0	Linear	4934200000	2427500000	2506700000	1027600000	461390000	566190000	1090400000	623190000	467200000	1392800000	636750000	756040000	1423400000	706150000	717280000	29471	1852	27877	182994;182995;182996;182997;182998;182999;183000;183001;183002;183003;183004;183005;183006;183007;183008;183009;183010;183011;183012;183013;183014;183015;183016	247282;247283;247284;247285;247286;247287;247288;247289;247290;247291;247292;247293;247294;247295;247296;247297;247298;247299;247300;247301;247302;247303;247304;247305;247306;247307;247308;247309;247310;247311;247312;247313;247314;247315;247316;247317;247318;247319;247320;247321;247322	247300			38	
LDGNELDLSLSDLNEVPVK	1	Unmodified	2069.0528	0.052830017	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.629	8		1							2	3	2	2	98.553	98.403	2;3	6.4477E-25	89371	160511_QHF_FH_JSI11i_1	174.78	165.25			0.86672	0.99601	6.1733	8	0	Plateau	1.195	0.99064	2.7367	2	0	Median	0.84474	1.0135	4.4398	2	0	Median	1.0958	1.0867	3.9008	2	0	Median	0.90945	0.93824	1.4592	2	0	Median	1171600000	577150000	594450000	143660000	68653000	75012000	461430000	242940000	218500000	226270000	89065000	137210000	340240000	176500000	163740000	29472	3968	27878	183017;183018;183019;183020;183021;183022;183023;183024;183025	247323;247324;247325;247326;247327;247328;247329;247330;247331;247332;247333;247334;247335;247336;247337;247338;247339;247340;247341;247342;247343;247344;247345;247346;247347;247348;247349;247350;247351;247352;247353	247324			31	
LDGNLLTQPGQAR	0	Unmodified	1381.7314	0.73137672	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		46.145	45.742	2	0.0018159	41308	160511_QHF_FH_JSI11i_1	71.555	33.078			0.4527	0.43179	22.546	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4527	0.43179	22.546	2	2	Median	NaN	NaN	NaN	0	0	Median	125890000	81853000	44038000	0	0	0	0	0	0	125890000	81853000	44038000	0	0	0	29473	4424	27879	183026;183027	247354;247355	247354			2	
LDGPILQILFMNNAISK	1	Unmodified	1886.0336	0.03355532	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.54	102.55	3	1.2006E-06	89310	160511_QHF_FH_JSI12i_3	101.67	90.624			0.87207	0.87409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87207	0.87409	NaN	1	0	Median	90710000	44951000	45759000	0	0	0	0	0	0	0	0	0	90710000	44951000	45759000	29474	3086	27880	183028	247356	247356			1	
LDGQTPHDERQDSINAYNEPNSTK	1	Unmodified	2728.2325	0.23247873	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	3	4	4	28.882	28.245	3;4	6.8499E-17	23684	160511_QHF_FH_JSI12i_3	125.11	118.27			1.0484	1.0433	26.254	12	6	Median	1.192	0.9938	6.9557	2	1	Median	0.77516	0.93403	18.585	3	2	Plateau	1.1001	1.0427	35.267	3	1	Median	0.96751	1.0383	34.183	4	2	Median	691970000	336730000	355230000	93453000	38825000	54627000	158040000	82512000	75529000	228050000	96232000	131820000	212420000	119160000	93258000	29475	403	27881	183029;183030;183031;183032;183033;183034;183035;183036;183037;183038;183039;183040;183041	247357;247358;247359;247360;247361;247362;247363;247364;247365;247366;247367;247368;247369;247370;247371;247372;247373;247374;247375;247376;247377	247376			21	
LDGSHPAFLYGYGGFNISITPNYSVSR	0	Unmodified	2931.4192	0.41915729	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	89.274	80.982	3	1.5746E-58	46883	160513_QHF_FH_JSI10Kac_6	176.71	156.47			0.96133	0.81616	8.2768	4	0	Linear	1.0728	0.91629	NaN	1	0	Median	0.71854	0.82574	NaN	1	0	Median	1.0527	1.0106	NaN	1	0	Median	0.87787	0.92657	NaN	1	0	Median	438960000	231800000	207160000	101680000	50753000	50925000	187590000	104150000	83445000	71959000	37713000	34247000	77730000	39187000	38543000	29476	1615	27882	183042;183043;183044;183045	247378;247379;247380;247381;247382;247383	247383			6	
LDGSRLIK	1	Unmodified	900.53927	0.53926584	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	25.608	24.717	3	0.0034166	20245	160511_QHF_FH_JSI12i_3	51.854	0			0.48242	0.48627	130.23	3	1	Median	0.91397	0.75313	NaN	1	0	Median	0.056737	0.065496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48242	0.48627	NaN	1	0	Median	189370000	141680000	47690000	41889000	18777000	23112000	66914000	61836000	5078000	0	0	0	80569000	61069000	19500000	29477	1979	27883	183046;183047;183048;183049	247384;247385;247386	247386			3	
LDGTEINGR	0	Unmodified	973.48287	0.48287317	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		19.234	18.609	2	0.00086812	15652	160511_QHF_FH_JSI9i_1	84.498	34.458			1.2344	1.0978	10.632	2	0	Median	1.2495	1.0183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2195	1.1835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	758740000	355060000	403690000	383840000	179140000	204710000	0	0	0	374900000	175920000	198980000	0	0	0	29478	2378	27884	183050;183051	247387;247388	247388			2	
LDGTEVNGRK	1	Unmodified	1087.5622	0.56218613	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	9.9181	9.6046	3	0.00026691	7018	160511_QHF_FH_JSI12i_3	57.348	30.045			1.2757	1.1378	18.891	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.1261	1.4012	NaN	1	0	Median	1.5409	1.5782	NaN	1	0	Median	1.2291	1.3362	29.756	2	1	Median	287640000	135030000	152610000	0	0	0	68266000	27816000	40450000	58639000	26621000	32018000	160740000	80594000	80142000	29479	2263	27885	183052;183053;183054;183055	247389;247390;247391	247391			3	
LDGYRGDFETFIK	1	Unmodified	1559.762	0.76200815	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	67.128	66.832	3	0.022754	57781	160511_QHF_FH_JSI12i_3	41.092	21.514			1.8195	1.8599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8195	1.8599	NaN	1	1	Median	69374000	29545000	39829000	0	0	0	0	0	0	0	0	0	69374000	29545000	39829000	29480	5014	27886	183056	247392	247392			1	
LDHAWAGIAR	0	Unmodified	1108.5778	0.57777661	4692	Q9H3H3	C11orf68	UPF0696 protein C11orf68	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	35.697	35.624	3	0.0010219	30272	160511_QHF_FH_JSI12i_3	44.425	33.667			1.1338	1.1046	43.331	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5941	1.5007	NaN	1	0	Median	0.80642	0.81312	NaN	1	0	Median	138960000	75353000	63607000	0	0	0	0	0	0	59436000	27810000	31625000	79524000	47542000	31982000	29481	4692	27887	183057;183058	247393;247394	247393			2	
LDHFNFER	0	Unmodified	1076.5039	0.50394297	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	36.104	35.591	3	0.018066	30897	160511_QHF_FH_JSI11i_3	31.422	27.563			0.89777	0.87565	20.007	5	0	Median	0.99616	0.87565	NaN	1	0	Median	0.81191	0.99929	NaN	1	0	Median	1.1175	1.0599	34.635	2	0	Median	0.87936	0.86515	NaN	1	0	Median	273200000	128270000	144930000	17006000	8750100	8255400	27429000	14992000	12437000	102000000	45722000	56276000	126770000	58808000	67961000	29482	5305	27888	183059;183060;183061;183062;183063	247395;247396	247395			1	
LDHKFDLMYAK	2	Oxidation (M)	1395.6857	0.68567208	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	2	3	2	3	40.22	37.763	3;4	4.9112E-05	32000	160511_QHF_FH_JSI12i_3	95.401	63.333			1.0925	1.1349	26.265	10	0	Median	1.3221	1.1083	59.318	2	0	Median	0.83239	0.93403	18.252	3	0	Median	1.0524	0.98649	9.3784	2	0	Median	1.3043	1.3148	8.9056	3	0	Median	1720500000	854120000	866420000	23796000	10228000	13568000	203020000	112290000	90727000	380340000	189740000	190610000	1113400000	541870000	571520000	29483	27;2073;2074;4359	27889	183064;183065;183066;183067;183068;183069;183070;183071;183072;183073	247397;247398;247399;247400;247401;247402;247403;247404;247405;247406;247407;247408	247407		8	12	
LDHKFDLMYAK	2	Unmodified	1379.6908	0.69075746	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.61		9	15						7	8	8	7	8	49.261	46.566	2;3;4	1.5935E-08	39389	160511_QHF_FH_JSI12i_3	134.13	113.26			0.90836	0.97062	52.175	31	6	Median	1.2865	1.0712	26.149	8	2	Median	0.8331	0.97983	55.855	8	1	Median	0.89562	0.90686	58.505	7	1	Median	1.0075	1.037	65.853	8	2	Median	12762000000	6548700000	6213700000	879900000	392570000	487320000	1752500000	888750000	863790000	2331000000	1197300000	1133700000	7799000000	4070100000	3728900000	29484	27;2073;2074;4359	27889	183074;183075;183076;183077;183078;183079;183080;183081;183082;183083;183084;183085;183086;183087;183088;183089;183090;183091;183092;183093;183094;183095;183096;183097;183098;183099;183100;183101;183102;183103;183104	247409;247410;247411;247412;247413;247414;247415;247416;247417;247418;247419;247420;247421;247422;247423;247424;247425;247426;247427;247428;247429;247430;247431;247432;247433;247434;247435;247436;247437;247438;247439;247440;247441;247442;247443;247444;247445;247446;247447;247448;247449;247450;247451;247452;247453;247454;247455;247456;247457;247458;247459;247460;247461;247462;247463;247464;247465;247466;247467;247468;247469;247470;247471;247472;247473	247456			65	
LDHKFDLMYAK	2	Acetyl (K)	1421.7013	0.70132214	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								4	8	1	3	5	3	70.772	61.111	2;3	1.8932E-07	31851	160513_QHF_FH_JSI12Kac_6	115	88.033			0.64109	0.60397	105.65	10	2	Median	0.9739	0.81097	NaN	1	0	Median	1.0977	1.2965	7.6913	3	0	Median	0.27005	0.26065	25.738	4	1	Median	1.4356	1.5488	174.86	2	1	Median	1541700000	1092400000	449290000	3086600	1535100	1551400	279960000	123700000	156250000	1150400000	903550000	246820000	108310000	63640000	44670000	29485	27;2073;2074;4359	27889	183105;183106;183107;183108;183109;183110;183111;183112;183113;183114;183115;183116	247474;247475;247476;247477;247478;247479;247480;247481;247482;247483;247484;247485;247486;247487;247488;247489;247490;247491;247492;247493;247494;247495	247491	3;4		22	
LDHKFDLMYAK	2	Acetyl (K);Oxidation (M)	1437.6962	0.69623677	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.481								7	4	1	2	4	4	61.407	50.912	2;3	0.00019242	26405	160513_QHF_FH_JSI12Kac_6	84.718	63.26			0.44407	0.46407	215.14	10	4	Median	0.094282	0.08024	NaN	1	1	Median	1.3975	1.6438	22.21	2	0	Median	0.31907	0.30863	255.42	4	1	Median	0.15759	0.16795	278.24	3	2	Plateau	426380000	313890000	112480000	3752300	3548900	203390	25149000	12207000	12942000	350010000	265230000	84772000	47469000	32904000	14565000	29486	27;2073;2074;4359	27889	183117;183118;183119;183120;183121;183122;183123;183124;183125;183126;183127	247496;247497;247498;247499;247500;247501;247502;247503;247504;247505;247506;247507;247508;247509	247507	3;4	8	14	
LDHLAEKFR	1	Acetyl (K)	1169.6193	0.61930707	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	1	0	0	1		By matching	By MS/MS	By MS/MS	15.6	0.49								2	3		1	3	1	50.779	40.735	2;3	3.9277E-05	22157	160513_QHF_FH_JSI11Kac_6	105.2	94.031			0.41926	0.41252	82.531	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1757	1.3621	NaN	1	0	Median	0.41926	0.41252	13.684	2	0	Median	0.17209	0.1857	NaN	1	1	Median	127200000	98431000	28772000	0	0	0	1532200	732360	799890	118080000	90983000	27101000	7585800	6714900	870870	29487	361;1021	27890	183128;183129;183130;183131;183132	247510;247511;247512;247513;247514	247511	183		5	
LDHPFFVK	1	Unmodified	1001.5335	0.53345218	298	O15530;Q6A1A2	PDPK1;PDPK2P	3-phosphoinositide-dependent protein kinase 1;Putative 3-phosphoinositide-dependent protein kinase 2	yes	no	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	45.322	44.721	3	0.015033	38037	160511_QHF_FH_JSI12i_3	34.253	14.466			1.1247	1.1334	34.846	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.8633	2.0651	NaN	1	0	Median	1.2286	1.1254	NaN	1	0	Median	1.1247	1.1334	NaN	1	0	Median	115890000	51526000	64363000	0	0	0	20649000	6850000	13799000	39032000	18115000	20917000	56208000	26561000	29647000	29488	298	27891	183133;183134;183135	247515;247516	247516			2	
LDHSTDFFSEAFEHNGRPYSLLVYIPSR	0	Unmodified	3296.5891	0.58907616	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			88.766	83.045	4;5	2.8668E-07	47011	160513_QHF_FH_JSI10Kac_6	90.757	84.462			1.0283	1.2102	47.818	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0283	1.2102	47.818	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123730000	73346000	50385000	0	0	0	123730000	73346000	50385000	0	0	0	0	0	0	29489	2216	27892	183136;183137	247517;247518	247518			2	
LDHTWTVSFFSK	1	Unmodified	1466.7194	0.71941505	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	78.323	69.962	3	0.00049094	38851	160513_QHF_FH_JSI10Kac_6	55.314	40.961			0.79881	0.82877	33.881	4	0	Median	1.8268	1.5652	NaN	1	0	Median	0.65062	0.75424	NaN	1	0	Median	0.80419	0.79021	NaN	1	0	Median	0.79347	0.86922	NaN	1	0	Median	97112000	50200000	46912000	22412000	8762500	13650000	51214000	29608000	21606000	12659000	5445400	7213700	10826000	6383800	4442700	29490	1807	27893	183138;183139;183140;183141	247519;247520	247520			2	
LDHVVTIIK	1	Unmodified	1036.6281	0.62808085	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.76	6.54		8	7				1	5	8	8	8	6	7	46.472	41.226	2;3	1.3695E-05	21421	160513_QHF_FH_JSI12Kac_6	102.07	78.695			0.96247	0.95251	28.913	29	4	Median	1.0628	0.90291	44.093	8	2	Median	0.94003	1.1195	31.647	8	2	Median	0.93421	0.91919	9.7842	6	0	Median	0.89073	0.94895	16.23	7	0	Median	4323200000	2160700000	2162500000	738430000	352570000	385850000	961920000	499420000	462500000	1611400000	784720000	826720000	1011400000	523950000	487450000	29491	4325	27894	183142;183143;183144;183145;183146;183147;183148;183149;183150;183151;183152;183153;183154;183155;183156;183157;183158;183159;183160;183161;183162;183163;183164;183165;183166;183167;183168;183169;183170	247521;247522;247523;247524;247525;247526;247527;247528;247529;247530;247531;247532;247533;247534;247535;247536;247537;247538;247539;247540;247541;247542;247543;247544;247545;247546;247547;247548;247549;247550;247551;247552;247553;247554;247555	247553			35	
LDHYAIIK	1	Unmodified	971.54402	0.54401687	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.45	1	9	8					2	8	7	7	7	7	35.592	31.449	2;3	0.00014282	27150	160511_QHF_FH_JSI9i_2	94.302	61.462			0.96791	1.0322	47.278	26	4	Median	1.3335	1.0918	21.475	7	1	Median	0.96823	1.1488	59.608	7	1	Median	0.9304	0.90284	11.622	6	1	Median	0.94402	1.002	70.604	6	1	Median	13286000000	6717000000	6569200000	2143200000	872370000	1270800000	3074600000	1557500000	1517100000	4665900000	2267800000	2398100000	3402600000	2019400000	1383200000	29492	2017	27895	183171;183172;183173;183174;183175;183176;183177;183178;183179;183180;183181;183182;183183;183184;183185;183186;183187;183188;183189;183190;183191;183192;183193;183194;183195;183196;183197;183198	247556;247557;247558;247559;247560;247561;247562;247563;247564;247565;247566;247567;247568;247569;247570;247571;247572;247573;247574;247575;247576;247577;247578;247579;247580;247581;247582;247583;247584;247585;247586;247587;247588;247589;247590;247591;247592;247593	247570			37	
LDHYAIIKFPLTTESAMK	2	Acetyl (K);Oxidation (M)	2135.0973	0.097277789	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		82.61	73.296	3	3.2057E-07	40398	160513_QHF_FH_JSI11Kac_6	104.88	82.007			0.20663	0.19688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20663	0.19688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50346000	41169000	9177100	0	0	0	0	0	0	50346000	41169000	9177100	0	0	0	29493	2017	27896	183199	247594	247594	2049	1676	1	
LDIAAVR	0	Unmodified	756.44939	0.4493882	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	40.41	39.045	2	0.02207	33317	160511_QHF_FH_JSI12i_2	59.609	16.891			1.6565	1.8807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6565	1.8807	NaN	1	1	Median	292500000	61403000	231100000	0	0	0	0	0	0	0	0	0	292500000	61403000	231100000	29494	1557	27897	183200	247595	247595			1	
LDIDPETITWQR	0	Unmodified	1485.7464	0.74635808	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	79.496	78.799	2	2.42E-07	71543	160511_QHF_FH_JSI10i_1	130.98	109.53			1.1305	1.1547	12.417	8	2	Median	1.5241	1.2543	20.495	2	0	Median	0.95322	1.1116	NaN	1	0	Median	1.3001	1.2933	20.29	2	0	Median	1.0585	1.186	4.9606	3	2	Median	1625400000	791170000	834240000	333420000	192090000	141330000	381660000	185500000	196160000	472640000	204940000	267700000	437690000	208650000	229050000	29495	1004	27898	183201;183202;183203;183204;183205;183206;183207;183208;183209	247596;247597;247598;247599;247600;247601;247602;247603;247604;247605;247606	247601			11	
LDIDSPPITAR	0	Unmodified	1196.6401	0.6401021	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.16	6	4	3			3	6	3		4	8	5	8	61.534	56.094	2	1.3844E-13	50111	160511_QHF_FH_JSI9i_1	153.05	113			0.99738	1.0255	16.727	25	6	Median	1.2572	1.0756	26.138	4	0	Median	0.79792	0.93041	12.62	8	2	Median	1.0924	1.0808	7.2443	5	1	Median	0.9644	1.0136	16.434	8	3	Median	47492000000	24430000000	23063000000	7776200000	3382600000	4393700000	16039000000	9210400000	6828900000	8482800000	4064800000	4418000000	15194000000	7771900000	7422300000	29496	1055	27899	183210;183211;183212;183213;183214;183215;183216;183217;183218;183219;183220;183221;183222;183223;183224;183225;183226;183227;183228;183229;183230;183231;183232;183233;183234	247607;247608;247609;247610;247611;247612;247613;247614;247615;247616;247617;247618;247619;247620;247621;247622;247623;247624;247625;247626;247627;247628;247629;247630;247631;247632;247633;247634;247635;247636;247637;247638;247639	247625			33	
LDIEQYR	0	Unmodified	935.47125	0.47124585	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.4	0.49	3	2								1	1	2	1	40.514	39.946	2	0.042889	34159	160511_QHF_FH_JSI11i_2	45.952	24.181			0.93996	0.87278	6.3807	5	0	Median	0.99455	0.87278	NaN	1	0	Median	0.70502	0.8315	NaN	1	0	Median	0.94612	0.95307	3.6456	2	0	Median	0.84736	0.86702	NaN	1	0	Median	516180000	274920000	241260000	99318000	49827000	49491000	96214000	54988000	41226000	262890000	134450000	128450000	57753000	35656000	22098000	29497	1558	27900	183235;183236;183237;183238;183239	247640	247640			1	
LDIETGFHR	0	Unmodified	1086.5458	0.54580778	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	42.85	42.207	3	4.2149E-05	36044	160511_QHF_FH_JSI12i_3	74.376	61.565			1.0484	1.0568	2.8829	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86198	1.0673	NaN	1	0	Median	1.1132	1.0465	NaN	1	0	Median	1.0484	1.0779	4.3691	2	0	Median	363310000	169340000	193970000	0	0	0	29469000	17148000	12321000	121350000	53227000	68118000	212490000	98960000	113530000	29498	5548	27901	183240;183241;183242;183243	247641;247642;247643;247644	247644			4	
LDIISEDISELQK	1	Unmodified	1501.7876	0.78755419	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	3											1	2	82.93	82.471	2;3	3.965E-05	75173	160511_QHF_FH_JSI12i_1	115.29	88.614			1.051	1.0288	39.618	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.051	1.0288	NaN	1	0	Median	1.3673	1.4211	49.431	2	1	Median	81909000	39400000	42509000	0	0	0	0	0	0	42090000	19809000	22280000	39819000	19590000	20229000	29499	3258	27902	183244;183245;183246	247645;247646	247645			2	
LDIKLDSEDK	2	Unmodified	1174.6081	0.60813326	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1.91	0.668	3	6	2							2	2	2	5	41.182	40.351	2;3	0.00084824	36788	160511_QHF_FH_JSI12i_1	62.466	41.596			0.99961	1.074	36.921	10	4	Median	0.8343	0.69856	59.426	2	1	Median	1.0022	1.1926	2.2624	2	0	Median	1.0385	1.037	6.349	2	0	Median	0.81325	0.86367	42.916	4	3	Median	1028200000	522410000	505760000	133910000	50450000	83456000	250720000	138470000	112250000	196770000	89565000	107200000	446770000	243930000	202850000	29500	1033	27903	183247;183248;183249;183250;183251;183252;183253;183254;183255;183256;183257	247647;247648;247649;247650;247651;247652;247653;247654	247650			8	
LDIKLDSEDK	2	Acetyl (K)	1216.6187	0.61869795	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	62.784	53.309	2	1.4404E-07	27259	160513_QHF_FH_JSI10Kac_3	117.67	91.734			0.36743	0.37407	255.26	4	2	Median	NaN	NaN	NaN	0	0	Median	0.12646	0.15071	NaN	1	1	Median	2.9288	2.8477	369.09	2	1	Median	0.63222	0.66814	NaN	1	0	Median	32942000	22879000	10063000	0	0	0	7937200	6786300	1150900	14645000	9633600	5011700	10360000	6459100	3900800	29501	1033	27903	183258;183259;183260;183261	247655;247656;247657;247658	247658	854;855		4	
LDILDMFTEIK	1	Unmodified	1336.6948	0.69483978	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.59	102.51	2	5.5109E-15	88398	160511_QHF_FH_JSI12i_2	143.89	100.08			0.89112	0.89365	4.1397	3	0	Plateau	0.96791	0.82893	NaN	1	0	Median	0.67695	0.83621	NaN	1	0	Median	0.89112	0.89409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	557960000	228340000	329620000	88653000	37677000	50976000	113590000	48848000	64746000	355710000	141820000	213890000	0	0	0	29502	1356	27904	183262;183263;183264;183265	247659;247660;247661;247662	247659			4	
LDILDTAGQEEFGAMR	0	Unmodified	1764.8352	0.83524944	1977;966	P10301;P62070	RRAS;RRAS2	Ras-related protein R-Ras;Ras-related protein R-Ras2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	3	2	85.56	84.921	2;3	7.1476E-17	74842	160511_QHF_FH_JSI9i_2	124.3	99.509			1.1846	1.1334	27.059	8	2	Median	1.4367	1.216	11.467	2	0	Median	0.96414	1.142	44.845	2	0	Median	1.4192	1.4242	30.791	2	0	Median	0.8181	0.91647	5.7098	2	2	Median	336120000	170370000	165750000	68664000	28918000	39746000	121190000	67276000	53910000	88826000	38180000	50645000	57446000	36001000	21446000	29503	966;1977	27905	183266;183267;183268;183269;183270;183271;183272;183273;183274;183275	247663;247664;247665;247666;247667;247668;247669;247670;247671;247672;247673;247674;247675;247676	247671			12	
LDILGAAETGSGK	1	Unmodified	1230.6456	0.6455814	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	58.989	58.339	2	1.0283E-05	52890	160511_QHF_FH_JSI11i_1	134.13	96.655			1.4829	1.5563	15.659	5	5	Median	1.5082	1.2295	NaN	1	1	Median	1.4517	1.7205	NaN	1	1	Median	1.3884	1.3402	NaN	1	1	Median	1.5977	1.6556	8.7541	2	2	Median	286510000	126100000	160410000	48100000	22585000	25515000	53128000	25173000	27954000	73603000	33135000	40468000	111680000	45202000	66476000	29504	4603	27906	183276;183277;183278;183279;183280	247677;247678;247679;247680;247681	247677			5	
LDILHQVAMWQK	1	Unmodified	1480.7861	0.78605483	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	2	3	5	4	83.856	80.981	2;3	1.5857E-08	40310	160513_QHF_FH_JSI9Kac_6	105.65	86.591			1.0646	1.0641	15.915	13	1	Median	1.3242	1.1558	10.661	2	0	Median	0.8674	0.97666	26.491	3	0	Median	1.0711	1.0124	4.6091	4	1	Median	1.014	1.0765	18.712	4	0	Median	768380000	370660000	397720000	84952000	32639000	52313000	224770000	101740000	123030000	200970000	96369000	104600000	257690000	139910000	117770000	29505	4545	27907	183281;183282;183283;183284;183285;183286;183287;183288;183289;183290;183291;183292;183293;183294	247682;247683;247684;247685;247686;247687;247688;247689;247690;247691;247692;247693;247694;247695;247696;247697	247689			15	
LDIPEPR	0	Unmodified	838.45487	0.45486751	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	43.502	43.024	2	0.011062	38612	160511_QHF_FH_JSI10i_1	72.138	16.697			0.728	0.75188	12.867	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56956	0.67759	NaN	1	0	Median	0.892	0.87515	NaN	1	0	Median	0.728	0.75188	NaN	1	0	Median	133550000	78003000	55545000	0	0	0	44895000	29546000	15348000	41948000	24031000	17917000	46706000	24426000	22280000	29506	236	27908	183295;183296;183297	247698;247699;247700;247701	247701			4	
LDIPTGTTPQRK	1	Unmodified	1325.7303	0.73031409	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.684	33.241	3	0.025626	27146	160511_QHF_FH_JSI9i_3	20.236	12.866			1.0589	0.85946	NaN	1	0	Median	1.0589	0.85946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23704000	13486000	10219000	23704000	13486000	10219000	0	0	0	0	0	0	0	0	0	29507	1779	27909	183298	247702	247702			1	
LDISDEFSEAIK	1	Unmodified	1365.6664	0.66637643	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			79.459	79.298	2	0.0031643	71987	160511_QHF_FH_JSI10i_1	67.214	49.746			0.82797	0.97124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82797	0.97124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90610000	59005000	31606000	0	0	0	90610000	59005000	31606000	0	0	0	0	0	0	29508	4664	27910	183299	247703	247703			1	
LDISDEFSEVIK	1	Unmodified	1393.6977	0.69767655	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	89.673	89.128	2	0.00067413	81119	160511_QHF_FH_JSI11i_1	80.763	69.599			0.31122	0.31861	67.019	3	3	Median	0.60657	0.49336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13465	0.13233	NaN	1	1	Median	0.31122	0.31861	NaN	1	1	Median	207280000	169700000	37584000	21120000	15636000	5484500	0	0	0	119160000	103350000	15810000	67002000	50713000	16289000	29509	4727	27911	183300;183301;183302	247704;247705;247706	247704			3	
LDITTLTGVPEEHIK	1	Unmodified	1664.8985	0.89850163	310	O43181	NDUFS4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.164	75.317	3	3.2468E-05	66085	160511_QHF_FH_JSI11i_2	74.789	69.612			0.91347	0.88403	12.494	4	0	Median	0.97414	0.84437	NaN	1	0	Median	0.61507	0.76055	NaN	1	0	Median	0.91848	0.92555	NaN	1	0	Median	0.90849	1.0183	NaN	1	0	Median	457980000	230170000	227810000	106300000	51079000	55223000	113370000	62142000	51229000	128960000	57385000	71577000	109340000	59562000	49782000	29510	310	27912	183303;183304;183305;183306	247707;247708;247709;247710;247711;247712	247710			5	
LDIVFYLLR	0	Unmodified	1150.675	0.67503104	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.063	87.656	2	6.0846E-17	47329	160513_QHF_FH_JSI12Kac_6	172.14	133.35			0.85487	0.80743	21.836	4	0	Median	0.90794	0.78939	NaN	1	0	Median	0.69945	0.82587	NaN	1	0	Median	0.8049	0.76649	NaN	1	0	Median	1.1527	1.2228	NaN	1	0	Median	1034900000	546270000	488640000	272640000	146980000	125660000	347990000	194700000	153290000	238220000	120300000	117920000	176060000	84292000	91766000	29511	2598	27913	183307;183308;183309;183310	247713;247714;247715;247716;247717;247718	247716			6	
LDKAQIHDLVLVGGSTR	1	Acetyl (K)	1863.0214	0.021410729	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	1			By MS/MS		15	0								1				1		81.137	70.587	3	0.035297	37416	160513_QHF_FH_JSI11Kac_5	38.417	31.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3946900	3946900	0	0	0	0	0	0	0	3946900	3946900	0	0	0	0	29512	954	27914	183311	247719	247719			1	
LDKDEIR	1	Unmodified	887.47125	0.47124585	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	12.311	11.863	3	0.0080655	9218	160511_QHF_FH_JSI11i_2	55.531	6.9693			0.77294	0.78968	29.991	5	0	Median	0.84092	0.72838	NaN	1	0	Median	0.51132	0.62129	NaN	1	0	Median	1.0438	1.0427	39.312	2	0	Median	0.74352	0.81655	NaN	1	0	Median	1259500000	740550000	518980000	268950000	139470000	129480000	255460000	186320000	69142000	489080000	274230000	214850000	246040000	140530000	105510000	29513	2652	27915	183312;183313;183314;183315;183316	247720;247721;247722;247723;247724	247723			5	
LDKLELR	1	Unmodified	885.52837	0.5283668	1644	P49184	DNASE1L1	Deoxyribonuclease-1-like 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.991	30.991	3	0.05199	26884	160511_QHF_FH_JSI11i_3	32.355	0			0.14513	0.13686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14513	0.13686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27266000	24774000	2492000	0	0	0	0	0	0	27266000	24774000	2492000	0	0	0	29514	1644	27916	183317	247725	247725			1	
LDKQHTFR	1	Acetyl (K)	1085.5618	0.56179219	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	29.608	21.022	3	0.0019367	12063	160513_QHF_FH_JSI11Kac_6	73.233	52.261			0.44521	0.47294	97.633	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5463	1.7786	NaN	1	0	Median	0.26662	0.26476	NaN	1	0	Median	0.44521	0.47294	NaN	1	0	Median	56162000	38890000	17273000	0	0	0	15101000	6287700	8813000	34291000	27429000	6862700	6770200	5173300	1597000	29515	1867	27917	183318;183319;183320	247726;247727	247726	1885		2	
LDKSQIHDIVLVGGSTR	1	Acetyl (K)	1879.0163	0.016325351	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		79.321	68.734	3	0.00038548	36452	160513_QHF_FH_JSI11Kac_5	88.264	77.159			0.029979	0.02951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.029979	0.02951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38941000	38536000	405100	0	0	0	0	0	0	38941000	38536000	405100	0	0	0	29516	985	27918	183321	247728	247728	773		1	
LDLAGRDLTDYLMK	1	Unmodified	1622.8338	0.83379288	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							4	3	3	4	88.502	87.977	2;3	4.9821E-05	78613	160511_QHF_FH_JSI11i_3	103.85	89.166			1.3891	1.4871	36.714	14	0	Median	1.1037	0.93203	3.3333	4	0	Median	2.0664	2.5357	6.3962	3	0	Median	1.5664	1.4971	3.852	3	0	Median	1.3564	1.4871	2.3338	4	0	Median	6096500000	2472700000	3623700000	840530000	410950000	429580000	1003500000	317680000	685830000	734650000	265650000	468990000	3517800000	1478400000	2039300000	29517	1916;2015;2062;2070;2865	27919	183322;183323;183324;183325;183326;183327;183328;183329;183330;183331;183332;183333;183334;183335	247729;247730;247731;247732;247733;247734;247735;247736;247737;247738;247739;247740;247741;247742;247743;247744;247745;247746;247747;247748;247749;247750;247751;247752;247753;247754;247755;247756;247757;247758;247759;247760;247761;247762;247763;247764	247731			36	
LDLAGRDLTDYLMK	1	Oxidation (M)	1638.8287	0.8287075	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	1	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							1	1	1	3	79.678	79.058	2;3	0.030846	68835	160511_QHF_FH_JSI12i_3	58.676	48.445			1.5026	1.522	29.283	6	0	Median	1.1561	0.97025	NaN	1	0	Median	2.0264	2.4401	NaN	1	0	Median	1.5239	1.5179	NaN	1	0	Median	1.5578	1.5262	4.0954	3	0	Plateau	930960000	374540000	556410000	50014000	24275000	25739000	117090000	45099000	71996000	30536000	11324000	19212000	733310000	293840000	439470000	29518	1916;2015;2062;2070;2865	27919	183336;183337;183338;183339;183340;183341	247765;247766;247767	247767		1574	3	
LDLDFPNLPYLLDGK	1	Unmodified	1731.9083	0.90833803	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			102.24	102.21	2	0.0016318	92975	160511_QHF_FH_JSI10i_1	74.613	50.864			0.86473	1.0502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86473	1.0502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65559000	31976000	33583000	0	0	0	65559000	31976000	33583000	0	0	0	0	0	0	29519	1188	27920	183342	247768	247768			1	
LDLDLTADSQPPVFK	1	Unmodified	1657.8563	0.85630246	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	4	2	87.06	86.672	2;3	2.3604E-30	78850	160511_QHF_FH_JSI10i_1	195.25	166.52			0.88075	0.92216	15.274	9	5	Median	1.3262	1.1054	NaN	1	1	Median	0.74937	0.88291	5.6558	2	0	Median	1.0247	1.0059	20.929	4	4	Median	0.87632	0.92143	0.11336	2	0	Median	864490000	433040000	431450000	63329000	27289000	36040000	234820000	132650000	102170000	378100000	177910000	200190000	188240000	95191000	93054000	29520	2380	27921	183343;183344;183345;183346;183347;183348;183349;183350;183351;183352	247769;247770;247771;247772;247773;247774;247775;247776;247777;247778;247779;247780;247781;247782;247783;247784;247785;247786;247787;247788	247783			20	
LDLFANVVHVK	1	Unmodified	1253.7132	0.71320746	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	3	4	2	76.653	73.742	2;3	1.1009E-15	39167	160513_QHF_FH_JSI10Kac_6	136.48	117.73			0.94458	1.0362	12.298	10	0	Median	1.2065	1.0313	9.3964	2	0	Median	0.90991	1.0788	8.1047	3	0	Median	1.1422	1.0663	15.884	3	0	Plateau	1.0046	1.0414	5.4527	2	0	Median	456600000	218240000	238360000	82415000	29186000	53228000	105050000	51616000	53433000	175500000	89708000	85795000	93631000	47729000	45902000	29521	386	27922	183353;183354;183355;183356;183357;183358;183359;183360;183361;183362;183363;183364	247789;247790;247791;247792;247793;247794;247795;247796;247797;247798;247799;247800;247801;247802;247803;247804;247805;247806;247807;247808	247808			20	
LDLGEDYPSGK	1	Unmodified	1192.5612	0.56118307	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	45.568	44.808	2	2.6695E-05	40194	160511_QHF_FH_JSI11i_1	99.568	67.153			0.96659	0.86702	20.789	6	0	Median	1.1536	0.96774	2.5064	2	0	Median	0.64604	0.76057	NaN	1	0	Median	0.81349	0.79067	NaN	1	0	Median	0.87571	0.91051	40.293	2	0	Median	1001100000	562830000	438280000	223040000	107580000	115460000	255170000	160060000	95109000	267920000	142480000	125440000	254990000	152710000	102270000	29522	300	27923	183365;183366;183367;183368;183369;183370	247809;247810;247811;247812;247813;247814;247815;247816;247817	247809			9	
LDLGEDYPSGKK	2	Unmodified	1320.6561	0.65614609	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		36.22	35.507	2	0.0010957	30243	160511_QHF_FH_JSI11i_2	83	55.885			0.67157	0.73585	37.422	4	4	Median	0.57846	0.49602	NaN	1	1	Median	0.53373	0.68596	NaN	1	1	Median	1.0063	0.98246	30.946	2	2	Median	NaN	NaN	NaN	0	0	Median	59802000	33843000	25959000	10848000	6775100	4072400	12577000	9669200	2908200	36377000	17399000	18979000	0	0	0	29523	300	27924	183371;183372;183373;183374	247818;247819;247820;247821	247819			4	
LDLGEDYPSGKK	2	Acetyl (K)	1362.6667	0.66671078	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			58.654	49.231	2	0.01789	25437	160513_QHF_FH_JSI10Kac_3	61.353	42.573			0.039377	0.044098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.039377	0.044098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1010500	998030	12433	0	0	0	1010500	998030	12433	0	0	0	0	0	0	29524	300	27924	183375	247822	247822	159		1	
LDLIAQQMMPEVR	0	Unmodified	1542.7898	0.78981957	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	84.305	83.698	2	2.9403E-05	76095	160511_QHF_FH_JSI10i_1	118.48	93.097			0.58591	0.67248	36.816	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77903	0.91036	50.987	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72807	0.80005	NaN	1	0	Median	122820000	68782000	54036000	0	0	0	77145000	42387000	34758000	0	0	0	45674000	26396000	19278000	29525	1455	27925	183376;183377;183378	247823;247824;247825;247826	247825			3	
LDLIHESILHK	1	Unmodified	1316.7452	0.74523587	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							3	3	4	4	59.706	59.054	2;3;4	9.218E-15	49646	160511_QHF_FH_JSI10i_3	142.07	123.32			1.0863	1.0741	22.937	13	1	Median	1.0118	0.85088	9.6665	3	1	Median	0.69844	0.86039	18.635	2	0	Median	1.2065	1.1377	15.3	4	0	Median	1.1294	1.164	26.656	4	0	Median	1843000000	967560000	875420000	139490000	69501000	69985000	195220000	106390000	88833000	654830000	361440000	293390000	853450000	430230000	423220000	29526	2084	27926	183379;183380;183381;183382;183383;183384;183385;183386;183387;183388;183389;183390;183391;183392	247827;247828;247829;247830;247831;247832;247833;247834;247835;247836;247837;247838;247839;247840;247841;247842;247843;247844;247845;247846;247847;247848;247849;247850	247836			24	
LDLITVEAFKPILSTR	1	Unmodified	1815.0506	0.050585593	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	2	3	4	3	100.02	99.381	2;3	3.334E-34	87722	160511_QHF_FH_JSI12i_3	242.4	221.1			0.81579	0.81209	22.1	10	10	Median	1.28	1.0645	25.891	2	2	Median	0.68088	1.0169	17.128	3	3	Plateau	0.80825	0.75936	18.266	3	3	Plateau	0.90399	0.9206	16.147	2	2	Median	4354900000	2513100000	1841700000	393500000	180190000	213310000	949950000	539350000	410610000	1351200000	811560000	539650000	1660200000	982030000	678170000	29527	696	27927	183393;183394;183395;183396;183397;183398;183399;183400;183401;183402;183403;183404	247851;247852;247853;247854;247855;247856;247857;247858;247859;247860;247861;247862	247860			12	
LDLLEDR	0	Unmodified	872.46035	0.46034682	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	50.225	48.3	2	0.0020489	43605	160511_QHF_FH_JSI10i_1	113.7	52.908			0.95147	0.99562	8.4657	9	1	Median	1.2707	1.0291	6.4329	2	0	Median	0.72037	0.87563	5.3799	3	1	Median	1.0408	1.0507	0.40309	2	0	Median	0.93868	1.0247	4.0754	2	0	Median	3341700000	1654900000	1686900000	652210000	276580000	375630000	876250000	493160000	383090000	1020100000	470890000	549180000	793200000	414250000	378960000	29528	2569	27928	183405;183406;183407;183408;183409;183410;183411;183412;183413	247863;247864;247865;247866;247867;247868;247869;247870;247871;247872;247873;247874;247875;247876	247869			14	
LDLLEEK	1	Unmodified	858.46985	0.46984887	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	48.984	48.304	2	0.020449	43633	160511_QHF_FH_JSI11i_1	57.047	0			1.1458	1.2832	9.2735	4	0	Linear	1.1746	1.0051	NaN	1	0	Median	0.93308	1.0922	NaN	1	0	Median	1.2591	1.2311	NaN	1	0	Median	1.1177	1.1997	NaN	1	0	Median	179680000	82102000	97580000	37464000	13675000	23788000	42462000	22946000	19516000	55919000	24351000	31568000	43837000	21130000	22707000	29529	2348	27929	183414;183415;183416;183417	247877;247878	247877			2	
LDLLGNLPGSK	1	Unmodified	1125.6394	0.63937381	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	75.075	74.432	2	0.00012102	65684	160511_QHF_FH_JSI9i_2	84.817	70.148			0.97265	1.0511	38.918	7	0	Median	0.67776	0.56999	NaN	1	0	Median	0.62064	0.74704	6.2701	2	0	Median	1.5896	1.5737	4.7904	2	0	Median	1.0126	1.0614	1.3788	2	0	Median	433680000	216600000	217090000	69981000	48264000	21717000	99037000	63632000	35405000	173380000	64133000	109250000	91286000	40567000	50719000	29530	1576	27930	183418;183419;183420;183421;183422;183423;183424	247879;247880;247881;247882;247883;247884;247885	247883			7	
LDLLLEK	1	Unmodified	842.51132	0.51131975	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		63.942	63.272	2	0.033279	55074	160511_QHF_FH_JSI11i_2	50.703	3.7093			1.046	1.107	11.433	4	0	Median	1.3624	1.1503	NaN	1	0	Median	0.92329	1.0945	19.011	2	0	Median	1.0247	1.0653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102260000	52536000	49726000	24994000	12321000	12673000	40950000	22980000	17970000	36318000	17234000	19084000	0	0	0	29531	4136	27931	183425;183426;183427;183428	247886;247887	247887			2	
LDLLSDTNMVDFAMDVYK	1	Unmodified	2088.9748	0.97477939	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	102.16	102.05	2	1.6203E-159	89864	160511_QHF_FH_JSI11i_2	296.04	262.15			0.94942	1.0847	7.1761	3	1	Median	NaN	NaN	NaN	0	0	Median	0.93062	1.102	NaN	1	0	Median	0.95372	0.9663	NaN	1	0	Median	0.94942	1.0847	NaN	1	1	Median	231310000	127740000	103570000	0	0	0	50201000	26044000	24158000	127620000	67920000	59696000	53490000	33776000	19714000	29532	1909	27932	183429;183430;183431	247888;247889;247890	247889			3	
LDLMDEGTDARDVLENK	1	Unmodified	1932.9099	0.90987095	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5									2	3	3	72.599	71.87	2;3	3.3057E-05	61852	160511_QHF_FH_JSI12i_2	114.82	100.26			1.1273	1.2428	34.819	6	1	Median	NaN	NaN	NaN	0	0	Median	1.1337	1.3464	NaN	1	0	Median	0.80052	0.77443	49.233	2	1	Median	1.2228	1.1979	6.7845	3	0	Plateau	392910000	215050000	177860000	0	0	0	139840000	71884000	67954000	99679000	59214000	40465000	153390000	83950000	69442000	29533	1711	27933	183432;183433;183434;183435;183436;183437;183438;183439	247891;247892;247893;247894;247895;247896;247897	247892			7	
LDLNLAAAVHK	1	Unmodified	1163.6663	0.66625727	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.087	60.812	3	0.0054742	52418	160511_QHF_FH_JSI12i_3	43.897	34.464			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29534	1515	27934	183440	247898	247898			1	
LDLPGNLPGSK	1	Unmodified	1109.6081	0.60807369	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.67	5.91	1	1					1			1		1	1	60.213	59.4	2	0.030993	32489	160513_QHF_FH_JSI11Kac_4	45.161	35.174			0.47951	0.45392	52.954	2	1	Median	0.35582	0.31215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6462	0.66009	NaN	1	0	Median	88026000	52565000	35462000	18221000	12309000	5912700	0	0	0	0	0	0	69805000	40256000	29549000	29535	1576	27935	183441;183442;183443	247899;247900;247901	247900			2	
LDLPNRPETSFLWFTNPCK	1	Unmodified	2334.1467	0.1466876	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		99.786	99.786	3	0.055852	88712	160511_QHF_FH_JSI11i_3	28.083	20.128			0.48627	0.4494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48627	0.4494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44088000	29241000	14847000	0	0	0	0	0	0	44088000	29241000	14847000	0	0	0	29536	5161	27936	183444	247902	247902			1	
LDLQQGQNLLQGLSK	1	Unmodified	1653.905	0.90498399	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	87.187	86.678	2	0.00015681	76270	160511_QHF_FH_JSI9i_2	107.99	74.124			0.91929	0.91722	15.595	8	2	Median	1.2254	1.0337	23.659	2	2	Median	0.72945	0.87977	7.6782	2	0	Median	1.0884	1.0512	5.016	2	0	Median	0.77929	0.82265	13.605	2	0	Median	252360000	127170000	125190000	49175000	22850000	26325000	68272000	37374000	30898000	82065000	36837000	45228000	52851000	30111000	22740000	29537	4856	27937	183445;183446;183447;183448;183449;183450;183451;183452	247903;247904;247905;247906;247907;247908;247909	247905			7	
LDLQWVQVLSEGWATPLK	1	Unmodified	2082.115	0.11497676	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	6.42		3							7	3	3	1	3	99.905	94.076	2;3	1.0466E-128	51481	160513_QHF_FH_JSI9Kac_6	322.23	269.84			0.98527	1.0192	22.378	10	1	Median	1.3638	1.1842	8.5361	3	0	Plateau	0.84603	1.016	20.697	3	1	Median	0.6415	0.60277	NaN	1	0	Median	0.95454	1.0206	12.343	3	0	Median	1314000000	679450000	634510000	428430000	189190000	239240000	507360000	291550000	215810000	139480000	73710000	65773000	238690000	125000000	113690000	29538	678	27938	183453;183454;183455;183456;183457;183458;183459;183460;183461;183462	247910;247911;247912;247913;247914;247915;247916;247917;247918;247919;247920;247921;247922;247923;247924;247925;247926	247918			17	
LDLRDDK	1	Unmodified	873.4556	0.45559579	2045	P63000;P15153;P60763	RAC1;RAC2;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	17.446	16.986	3	0.019929	13536	160511_QHF_FH_JSI12i_3	43.858	19.656			0.94123	0.89286	26.151	4	0	Median	1.0763	0.94664	NaN	1	0	Median	0.67087	0.80429	NaN	1	0	Median	0.82313	0.84213	NaN	1	0	Median	1.451	1.4284	NaN	1	0	Median	819650000	430180000	389470000	127080000	69637000	57441000	152080000	85019000	67063000	192220000	94827000	97388000	348280000	180700000	167580000	29539	2045	27939	183463;183464;183465;183466	247927;247928	247927			2	
LDLRDDKDTIEK	2	Unmodified	1459.7518	0.75183739	2045	P63000;P15153	RAC1;RAC2	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2	yes	no	0	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	1	3	3	32.402	32.121	2;3;4	6.6369E-05	27829	160511_QHF_FH_JSI11i_3	86.291	70.904			1.0086	1.0127	30.443	8	4	Median	1.023	0.89335	NaN	1	0	Median	0.86237	1.0653	NaN	1	0	Median	1.116	1.0306	36.698	3	1	Median	0.99453	0.99511	40.32	3	3	Median	1083500000	518410000	565070000	45683000	19592000	26091000	70407000	40113000	30293000	584020000	292740000	291270000	383370000	165960000	217410000	29540	2045	27940	183467;183468;183469;183470;183471;183472;183473;183474	247929;247930;247931;247932;247933;247934;247935	247930			7	
LDLSNNDISSLPYSLGNLHLK	1	Unmodified	2312.2012	0.20122559	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	100.8	100.64	3	3.5899E-18	86494	160511_QHF_FH_JSI12i_2	140.2	132.67			1.0569	1.162	20.707	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67946	0.85247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1029	1.2113	5.8833	2	2	Median	494030000	262890000	231140000	0	0	0	106490000	62032000	44457000	0	0	0	387540000	200860000	186680000	29541	4803	27941	183475;183476;183477	247936;247937;247938	247937			3	
LDLSSLAYSGK	1	Unmodified	1152.6027	0.60265396	2743	Q16595	FXN	Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		68.726	67.749	2	0.0023108	61633	160511_QHF_FH_JSI11i_1	61.815	25.872			1.1318	0.93975	NaN	1	1	Median	1.1318	0.93975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45588000	18924000	26664000	45588000	18924000	26664000	0	0	0	0	0	0	0	0	0	29542	2743	27942	183478;183479	247939;247940	247939			2	
LDLSVTEAVVAGIAK	1	Unmodified	1484.845	0.84500949	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	2	2								1	1	1	1	101.09	101	2	1.4092E-06	88792	160511_QHF_FH_JSI9i_2	128.28	102.9			0.79359	0.88362	20.826	4	2	Median	1.0606	0.91147	NaN	1	1	Median	0.7108	0.85662	NaN	1	0	Median	0.64722	0.62791	NaN	1	0	Median	0.88601	1.0218	NaN	1	1	Median	382930000	214350000	168580000	109860000	52855000	57001000	79298000	45744000	33554000	59643000	35771000	23872000	134130000	79984000	54148000	29543	1205	27943	183480;183481;183482;183483	247941;247942;247943	247943			3	
LDLVHTAALMLDK	1	Unmodified	1438.7854	0.78538612	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	96.969	96.913	3	0.001809	83890	160511_QHF_FH_JSI12i_3	51.211	45.727			1.1774	1.2695	60.591	3	2	Median	NaN	NaN	NaN	0	0	Median	0.66214	0.75115	NaN	1	1	Median	2.6093	2.5148	NaN	1	1	Median	1.1774	1.2695	NaN	1	0	Median	24411000	12467000	11944000	0	0	0	4591600	3854300	737260	8292200	2463400	5828800	11527000	6149100	5377600	29544	552	27944	183484;183485;183486	247944;247945;247946;247947	247947			4	
LDMEIER	0	Unmodified	904.43242	0.43241751	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1.25	0.433	3	1								1	1	1	1	39.592	38.926	2	0.037612	35204	160511_QHF_FH_JSI12i_1	48.561	15.951			0.74902	0.82762	29.597	4	0	Median	1.677	1.3716	NaN	1	0	Median	0.72123	0.83817	NaN	1	0	Median	0.69612	0.68956	NaN	1	0	Median	0.77789	0.8172	NaN	1	0	Median	367690000	184930000	182750000	56221000	25401000	30819000	115250000	60638000	54608000	50422000	24628000	25793000	145800000	74267000	71533000	29545	2517	27945	183487;183488;183489;183490	247948	247948			1	
LDMMDEEEVEVSLPR	0	Unmodified	1790.8067	0.80665143	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	82.674	82.38	2;3	9.3471E-19	74739	160511_QHF_FH_JSI10i_1	215.85	202.89			0.92569	0.99234	32.784	4	4	Median	NaN	NaN	NaN	0	0	Median	0.63339	0.74708	45.101	2	2	Median	1.0057	0.95818	NaN	1	1	Median	1.0647	1.12	NaN	1	1	Median	198340000	105320000	93021000	0	0	0	108550000	57752000	50800000	39342000	21750000	17591000	50442000	25813000	24629000	29546	1425	27946	183491;183492;183493;183494	247949;247950;247951;247952	247951			4	
LDNASAFQGAVISPHYDSLLVK	1	Unmodified	2344.2063	0.20631097	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	3	1	2	84.065	83.428	3	4.515E-10	71997	160511_QHF_FH_JSI12i_2	105.79	91.178			0.93171	1.0117	28.002	7	2	Median	1.1315	0.96698	NaN	1	0	Median	0.82458	1.0117	32.924	3	2	Plateau	1.0019	1.0127	NaN	1	0	Median	1.0847	1.1614	16.216	2	0	Median	923580000	450690000	472890000	153720000	61794000	91922000	262480000	154660000	107830000	268000000	115440000	152560000	239380000	118800000	120580000	29547	1002	27947	183495;183496;183497;183498;183499;183500;183501	247953;247954;247955;247956;247957;247958;247959;247960;247961;247962;247963;247964;247965	247953			13	
LDNDTNATK	1	Unmodified	990.4618	0.46180338	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	6.329	5.9322	2	0.0015631	3980	160511_QHF_FH_JSI12i_1	70.908	24.893			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29548	2934	27948	183502;183503;183504	247966;247967;247968	247966			3	
LDNGGYYITTR	0	Unmodified	1271.6146	0.61461563	884;845	P06241;P07947	FYN;YES1	Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Yes	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.766	38.429	2	0.016138	34629	160511_QHF_FH_JSI11i_1	42.689	23.418			1.1833	1.2599	14.713	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1969	1.3981	NaN	1	0	Median	1.1699	1.1354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138260000	61348000	76910000	0	0	0	57148000	26563000	30585000	81110000	34785000	46325000	0	0	0	29549	845;884	27949	183505;183506	247969	247969			1	
LDNLVAILDINR	0	Unmodified	1367.7773	0.77726428	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.35	4.27	5	9	4						2	5	5	5	5	96.572	95.464	2;3	1.0134E-31	85423	160511_QHF_FH_JSI9i_2	193.96	151.37			0.93296	0.96267	11.466	19	0	Median	1.2292	1.024	16.513	5	0	Median	0.78429	0.94271	6.701	5	0	Median	0.93998	0.92975	5.7795	4	0	Median	0.88789	0.95273	12.005	5	0	Median	4797100000	2374500000	2422600000	851380000	375170000	476200000	1073600000	540320000	533310000	1543200000	776050000	767190000	1328900000	682990000	645900000	29550	1322	27950	183507;183508;183509;183510;183511;183512;183513;183514;183515;183516;183517;183518;183519;183520;183521;183522;183523;183524;183525;183526	247970;247971;247972;247973;247974;247975;247976;247977;247978;247979;247980;247981;247982;247983;247984;247985;247986;247987;247988;247989;247990;247991;247992;247993;247994;247995;247996;247997;247998;247999;248000;248001;248002;248003;248004;248005;248006;248007;248008;248009;248010;248011;248012;248013;248014;248015;248016;248017;248018;248019;248020;248021;248022	247996			53	
LDNMLLAEGVAGPEK	1	Unmodified	1555.7916	0.79159371	1496	P40424	PBX1	Pre-B-cell leukemia transcription factor 1	no	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		69.884	69.21	3	0.00061685	61477	160511_QHF_FH_JSI9i_1	66.826	56.192			0.66881	0.59575	13.832	2	2	Median	0.66163	0.54024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67607	0.65697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33311000	16951000	16361000	16014000	6923600	9090600	0	0	0	17297000	10027000	7269900	0	0	0	29551	1496	27951	183527;183528	248023;248024	248024			2	
LDNMNVSRK	1	Unmodified	1075.5444	0.54442757	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		11.753	11.753	2;3	0.00087864	9317	160511_QHF_FH_JSI11i_3	83.948	40.14			1.137	1.0834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.137	1.0834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126990000	58746000	68246000	0	0	0	0	0	0	126990000	58746000	68246000	0	0	0	29552	3290	27952	183529;183530	248025;248026;248027	248027			3	
LDNNWGR	0	Unmodified	873.40931	0.4093143	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1.33	0.471	2	1								1		1	1	20.365	19.851	2	0.018158	16791	160511_QHF_FH_JSI9i_2	60.358	52.687			1.656	1.4485	6.32	3	0	Plateau	1.656	1.4485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4141	1.3691	NaN	1	0	Median	1.1873	1.2768	NaN	1	0	Median	230790000	104000000	126780000	132960000	57492000	75464000	0	0	0	60718000	28597000	32121000	37113000	17916000	19197000	29553	1130	27953	183531;183532;183533	248028	248028			1	
LDNNWGREER	0	Unmodified	1287.5956	0.59561152	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.2	0.4		4	1							2	3			19.674	18.775	2;3	0.017978	16097	160511_QHF_FH_JSI10i_2	33.039	17.283			0.95492	1.1541	14.669	5	0	Median	1.4167	1.2143	4.7856	2	0	Median	0.77139	0.9117	13.95	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	541390000	274530000	266860000	161910000	66701000	95212000	379480000	207830000	171650000	0	0	0	0	0	0	29554	1130	27954	183534;183535;183536;183537;183538	248029;248030;248031;248032;248033	248031			5	
LDNTVVGQTSWKPISNQSWDQK	2	Unmodified	2530.2452	0.24521567	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	2	1	1	67.01	66.31	3	1.0548E-22	58948	160511_QHF_FH_JSI11i_3	161.8	134.48			0.92374	0.91486	14.266	5	0	Median	1.0344	0.91486	NaN	1	0	Median	0.63305	0.7503	7.6645	2	0	Median	1.0657	1.0093	NaN	1	0	Median	0.92374	0.94678	NaN	1	0	Median	354720000	189710000	165010000	32874000	15343000	17531000	90945000	61541000	29404000	164680000	78852000	85831000	66219000	33975000	32244000	29555	2732	27955	183539;183540;183541;183542;183543	248034;248035;248036;248037;248038;248039	248035			6	
LDNVLLDSEGHIK	1	Unmodified	1451.762	0.76200815	1523	P41743	PRKCI	Protein kinase C iota type	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		6								1	2	2	1	57.052	56.191	3	0.00036262	48799	160511_QHF_FH_JSI11i_2	62.287	54.377			1.0142	1.0089	12.565	6	0	Median	1.1978	1.005	NaN	1	0	Median	0.75556	0.91321	8.935	2	0	Median	1.0142	1.0357	3.147	2	0	Median	1.1202	1.2605	NaN	1	0	Median	599330000	299120000	300210000	69764000	35007000	34757000	174520000	96117000	78403000	205160000	99866000	105290000	149890000	68130000	81761000	29556	1523	27956	183544;183545;183546;183547;183548;183549	248040;248041;248042;248043	248043			4	
LDNVMLDSEGHIK	1	Unmodified	1469.7184	0.71842877	1112	P17252	PRKCA	Protein kinase C alpha type	no	no	0	0	0	0			By MS/MS		2	0		2										2		48.212	47.691	3	0.00099257	41095	160511_QHF_FH_JSI11i_2	62.68	31.154			0.82759	0.84528	31.504	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82759	0.84528	31.504	2	2	Median	NaN	NaN	NaN	0	0	Median	146200000	81237000	64968000	0	0	0	0	0	0	146200000	81237000	64968000	0	0	0	29557	1112	27957	183550;183551	248044;248045	248044			2	
LDNVPHTPSSYIETLPK	1	Unmodified	1909.9785	0.97854286	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.81	5	7	4					3		5	5	5	4	64.527	62.193	2;3	8.607E-23	53369	160511_QHF_FH_JSI12i_2	157.42	138.82			0.9003	0.95769	13.15	18	6	Median	1.0846	0.91255	14.127	4	0	Median	0.80327	0.95618	13.907	5	4	Median	0.87404	0.85639	12.248	5	2	Median	0.87053	0.99126	10.053	4	0	Linear	2500300000	1330700000	1169600000	623940000	311300000	312650000	409690000	225710000	183980000	574060000	320470000	253590000	892580000	473230000	419350000	29558	4309	27958	183552;183553;183554;183555;183556;183557;183558;183559;183560;183561;183562;183563;183564;183565;183566;183567;183568;183569;183570	248046;248047;248048;248049;248050;248051;248052;248053;248054;248055;248056;248057;248058;248059;248060;248061;248062;248063;248064;248065;248066;248067;248068;248069;248070;248071;248072	248053			27	
LDNYDAPDIANIAISNELFEEAFAIFRK	1	Unmodified	3198.5873	0.58734483	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			100.16	94.444	3	7.051E-09	55591	160513_QHF_FH_JSI10Kac_6	105.25	87.303			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42668000	42668000	0	0	0	0	42668000	42668000	0	0	0	0	0	0	0	29559	2155	27959	183571	248073	248073			1	
LDPAASVTGSK	1	Unmodified	1044.5451	0.54513908	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	33.009	29.676	2	0.0003067	26798	160511_QHF_FH_JSI12i_1	76.143	42.346			0.96118	1.0112	31.905	6	0	Median	0.80261	0.66885	NaN	1	0	Median	0.70069	0.81347	NaN	1	0	Median	1.5199	1.4713	0.34816	2	0	Median	0.96118	1.0112	10.903	2	0	Median	668270000	319980000	348300000	149320000	77337000	71984000	150170000	79532000	70635000	180030000	69659000	110370000	188760000	93449000	95312000	29560	1576	27960	183572;183573;183574;183575;183576;183577	248074;248075;248076;248077;248078	248075			3	
LDPADPENPR	0	Unmodified	1122.5306	0.53055165	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	25.633	24.742	2	0.012111	21360	160511_QHF_FH_JSI9i_1	55.461	48.081			1.811	1.7086	9.4841	2	2	Median	1.9292	1.5978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7	1.8271	NaN	1	1	Median	705540000	176860000	528680000	323510000	80962000	242540000	0	0	0	0	0	0	382040000	95902000	286140000	29561	5739	27961	183578;183579	248079;248080	248080			2	
LDPCISWK	1	Unmodified	1017.4954	0.49535211	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	48.432	47.472	3	0.061794	40638	160511_QHF_FH_JSI11i_2	9.2141	0			0.95658	1.0599	23.109	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86495	1.0599	NaN	1	0	Median	1.5669	1.5619	NaN	1	0	Median	0.95658	1.0349	NaN	1	0	Median	80233000	38562000	41671000	0	0	0	31562000	17271000	14292000	30967000	14071000	16896000	17704000	7219800	10484000	29562	4228	27962	183580;183581;183582	248081	248081			1	
LDPEEMK	1	Unmodified	860.39497	0.39496937	3527	Q8N4H5	TOMM5	Mitochondrial import receptor subunit TOM5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.656	26.082	2	0.0167	22955	160511_QHF_FH_JSI10i_1	62.659	30.704			0.82957	0.73834	22.42	4	0	Median	0.88505	0.72842	NaN	1	0	Median	0.96791	1.1429	NaN	1	0	Median	0.77757	0.7484	NaN	1	0	Median	0.68154	0.7164	NaN	1	0	Median	1864400000	911370000	952990000	371490000	176660000	194830000	545130000	253180000	291950000	499880000	253580000	246300000	447860000	227950000	219910000	29563	3527	27963	183583;183584;183585;183586	248082;248083;248084	248083			3	
LDPELHLDIK	1	Unmodified	1191.6499	0.6499385	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0		By MS/MS	By matching		2	0		2									1	1		61.886	61.201	3	0.033023	54160	160511_QHF_FH_JSI10i_2	27.163	19.882			1.012	1.082	5.7564	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93555	1.1269	NaN	1	0	Median	1.0947	1.0388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33984000	17135000	16849000	0	0	0	18389000	8747300	9641300	15596000	8387900	7207800	0	0	0	29564	2324	27964	183587;183588	248085	248085			1	
LDPFADGGK	1	Unmodified	918.4447	0.44469675	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.527	40.882	2	0.00077814	37080	160511_QHF_FH_JSI12i_1	74.301	54.665			0.85977	0.84984	16.372	4	0	Median	1.0632	0.8855	NaN	1	0	Median	0.87464	1.0122	NaN	1	0	Median	0.84516	0.81561	NaN	1	0	Median	0.66445	0.68437	NaN	1	0	Median	776810000	411030000	365780000	164170000	77191000	86978000	205620000	114310000	91313000	215500000	115540000	99961000	191520000	103990000	87531000	29565	542	27965	183589;183590;183591;183592	248086;248087;248088;248089;248090;248091;248092	248089			7	
LDPFESSDPFSSSSVSSK	1	Unmodified	1901.8531	0.85306758	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.386	74.898	2	1.2942E-06	66569	160511_QHF_FH_JSI9i_1	117.07	98.327			0.97248	1.006	8.0832	4	0	Median	1.3641	1.1052	NaN	1	0	Median	0.83766	0.98011	NaN	1	0	Median	0.93364	0.91299	NaN	1	0	Median	1.0129	1.0325	NaN	1	0	Median	185150000	98425000	86728000	48958000	21914000	27043000	47542000	27499000	20043000	56264000	31841000	24422000	32389000	17170000	15219000	29566	5230	27966	183593;183594;183595;183596	248093;248094;248095;248096;248097;248098;248099;248100	248100			8	
LDPFQEVVLESSSVDELREK	1	Unmodified	2318.1642	0.16417138	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		2	2							1			3	96.235	96.099	3	0.00027276	82790	160511_QHF_FH_JSI12i_2	55.127	41.897			0.99716	1.0475	63.945	4	2	Median	0.63272	0.54467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3665	1.455	55.078	3	2	Median	96376000	52417000	43959000	38479000	23605000	14874000	0	0	0	0	0	0	57897000	28812000	29085000	29567	4152	27967	183597;183598;183599;183600	248101;248102;248103;248104	248101			4	
LDPGAKHSQPIPK	2	Acetyl (K)	1428.7725	0.77251325	157	O00625	PIR	Pirin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.471							4	2			2	3	1	38.771	28.957	2;3	0.00026011	17791	160513_QHF_FH_JSI11Kac_4	77.527	62.325			0.27355	0.26483	109.42	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3605	1.5924	NaN	1	0	Median	0.24787	0.241	13.334	2	0	Median	NaN	NaN	NaN	0	0	Median	64652000	49471000	15182000	0	0	0	3439000	1340600	2098400	61213000	48130000	13083000	0	0	0	29568	157	27968	183601;183602;183603;183604;183605;183606	248105;248106;248107;248108;248109;248110	248106	93		6	
LDPGAVSDVPEAIK	1	Unmodified	1409.7402	0.74021007	1536	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		62.918	62.476	2	0.0050953	56755	160511_QHF_FH_JSI11i_1	53.967	34.724			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29569	1536	27969	183607	248111	248111			1	
LDPGLIMEQVK	1	Unmodified	1241.669	0.66895938	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	3	1	77.048	76.356	2	1.1074E-05	69312	160511_QHF_FH_JSI11i_1	107.79	81.404			0.95984	0.96776	43.218	8	2	Median	1.0587	0.91799	16.443	3	1	Plateau	0.87826	1.0411	2.8692	2	0	Median	1.0788	1.0511	65.589	3	1	Median	NaN	NaN	NaN	0	0	Median	1569800000	764590000	805250000	339840000	170780000	169060000	418310000	224460000	193860000	811700000	369360000	442340000	0	0	0	29570	5668	27970	183608;183609;183610;183611;183612;183613;183614;183615;183616	248112;248113;248114;248115;248116;248117;248118;248119;248120;248121;248122;248123;248124;248125;248126;248127;248128;248129;248130;248131;248132	248112			21	
LDPGSEETQTLVR	0	Unmodified	1443.7205	0.72053726	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.73	7	1				3	1			2	4	3	3	46.769	43.087	2;3	3.1869E-05	23574	160513_QHF_FH_JSI11Kac_3	96.015	75.711			0.99745	1.0624	19.813	12	0	Median	1.1252	0.93465	29.076	2	0	Median	1.055	1.2569	20.894	4	0	Median	0.97508	0.95405	6.1305	3	0	Plateau	0.97631	1.0563	6.4137	3	0	Median	5963400000	3104900000	2858500000	1593900000	818030000	775880000	2167000000	1161200000	1005900000	2135600000	1093200000	1042300000	66937000	32481000	34455000	29571	1284	27971	183617;183618;183619;183620;183621;183622;183623;183624;183625;183626;183627;183628	248133;248134;248135;248136;248137;248138;248139;248140;248141;248142;248143;248144;248145	248136			13	
LDPHGGGLLSSK	1	Unmodified	1179.6248	0.62478638	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	32.569	32.475	2	0.02432	28202	160511_QHF_FH_JSI11i_3	42.718	22.018			1.5875	1.7041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5875	1.7041	NaN	1	1	Median	19298000	6417000	12881000	0	0	0	0	0	0	0	0	0	19298000	6417000	12881000	29572	3063	27972	183629;183630	248146;248147	248146			2	
LDPHLVLDQLR	0	Unmodified	1317.7405	0.74048484	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.497		11	9							5	6	5	4	76.51	75.667	2;3	5.4108E-06	67191	160511_QHF_FH_JSI10i_2	123.63	93.371			1.1436	1.1262	25.884	18	7	Median	1.4114	1.1443	25.039	5	2	Median	0.96442	1.1073	13.535	5	3	Median	1.1169	1.0883	27.868	4	1	Median	1.4791	1.5089	36.61	4	1	Median	4890400000	2288900000	2601500000	848830000	328310000	520520000	792880000	413800000	379080000	2022900000	962140000	1060800000	1225800000	584680000	641110000	29573	1436;1437	27973	183631;183632;183633;183634;183635;183636;183637;183638;183639;183640;183641;183642;183643;183644;183645;183646;183647;183648;183649;183650	248148;248149;248150;248151;248152;248153;248154;248155;248156;248157;248158;248159;248160;248161;248162;248163;248164;248165;248166;248167;248168;248169;248170;248171;248172;248173;248174;248175;248176;248177;248178;248179;248180;248181;248182;248183;248184;248185;248186;248187;248188;248189;248190;248191;248192	248185			45	
LDPHNHVLYSNR	0	Unmodified	1463.727	0.72696004	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.68		2	19						7	10	6	7	5	25.307	22.572	2;3;4	4.1096E-08	18184	160511_QHF_FH_JSI12i_3	122.46	110.88			0.98199	0.9477	31.91	25	5	Median	1.0061	0.83793	29.479	8	1	Median	0.81787	0.94761	40.998	5	2	Median	0.8525	0.81041	34.046	7	2	Median	1.0861	1.1224	12.642	5	0	Median	2989600000	1459100000	1530500000	848740000	365010000	483730000	432850000	227910000	204940000	792890000	451300000	341590000	915080000	414830000	500250000	29574	1386	27974	183651;183652;183653;183654;183655;183656;183657;183658;183659;183660;183661;183662;183663;183664;183665;183666;183667;183668;183669;183670;183671;183672;183673;183674;183675;183676;183677;183678	248193;248194;248195;248196;248197;248198;248199;248200;248201;248202;248203;248204;248205;248206;248207;248208;248209;248210;248211;248212;248213;248214;248215;248216;248217;248218;248219;248220;248221;248222;248223;248224;248225;248226;248227;248228;248229;248230;248231;248232;248233;248234;248235	248227			38	
LDPITGR	0	Unmodified	770.42865	0.42865276	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	4.99	4	3	1				2			3	3	3	1	29.85	27.355	2	0.0048407	24662	160511_QHF_FH_JSI12i_1	97.068	30.033			1.1631	1.0965	16.324	10	0	Median	1.1989	0.9685	15.651	3	0	Plateau	0.94099	1.0892	23.96	3	0	Median	1.1719	1.1446	9.2827	3	0	Median	0.8287	0.88107	NaN	1	0	Median	5575400000	2801000000	2774400000	1306800000	600600000	706240000	1577100000	868620000	708430000	1674800000	792860000	881940000	1016700000	538920000	477770000	29575	2488	27975	183679;183680;183681;183682;183683;183684;183685;183686;183687;183688	248236;248237;248238;248239;248240;248241;248242;248243;248244;248245;248246;248247;248248;248249;248250;248251	248238			16	
LDPNFLLK	1	Unmodified	958.54877	0.54876789	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	73.284	72.412	2	0.0045282	62505	160511_QHF_FH_JSI12i_2	68.422	38.848			0.76638	1.009	15.253	4	0	Linear	1.2012	1.0455	NaN	1	0	Median	0.92337	1.0884	NaN	1	0	Median	0.75866	0.77364	NaN	1	0	Median	0.87529	0.97371	NaN	1	0	Median	72783000	36767000	36016000	12254000	5823500	6430100	16820000	9242800	7577600	23309000	10949000	12360000	20400000	10752000	9648600	29576	4530	27976	183689;183690;183691;183692	248252	248252			1	
LDPQKAFFSGR	1	Acetyl (K)	1306.667	0.66698555	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	74.323	63.703	2	0.01977	33966	160513_QHF_FH_JSI11Kac_5	49.5	32.261			0.94005	0.96153	17.576	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81644	0.96153	NaN	1	0	Median	0.94005	0.92557	NaN	1	0	Median	1.156	1.2768	NaN	1	0	Median	31015000	15843000	15172000	0	0	0	6283700	2838300	3445400	14331000	7797200	6533500	10400000	5207600	5192800	29577	1747	27977	183693;183694;183695	248253	248253	1765		1	
LDPSIFESLQK	1	Unmodified	1275.6711	0.67106787	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.87	6	4	1				1	3		3	5	3	4	81.72	77.814	2	1.9214E-10	69368	160511_QHF_FH_JSI12i_2	140.45	99.459			0.96815	0.95742	15.148	12	1	Median	1.0742	0.90325	5.0123	2	0	Median	0.72298	0.84864	22.178	3	1	Median	0.83229	0.85176	8.6145	3	0	Plateau	0.98513	1.0685	12.208	4	0	Median	2256000000	1083400000	1172600000	405780000	195340000	210440000	545170000	273570000	271600000	746820000	375870000	370950000	558220000	238620000	319600000	29578	5496	27978	183696;183697;183698;183699;183700;183701;183702;183703;183704;183705;183706;183707;183708;183709;183710	248254;248255;248256;248257;248258;248259;248260;248261;248262;248263;248264;248265;248266;248267;248268;248269;248270;248271;248272;248273	248257			20	
LDPSPQTIYK	1	Unmodified	1160.6077	0.60773933	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.629	41.974	2	0.00013164	38228	160511_QHF_FH_JSI12i_1	83.998	62.148			0.63039	0.71065	18.743	4	0	Median	0.60333	0.50272	NaN	1	0	Median	0.58817	0.71737	NaN	1	0	Median	0.78827	0.76097	NaN	1	0	Median	0.65867	0.70399	NaN	1	0	Median	1070200000	656030000	414160000	204480000	129680000	74799000	276780000	180860000	95920000	304080000	164930000	139140000	284860000	180560000	104300000	29579	2084	27979	183711;183712;183713;183714	248274;248275;248276;248277;248278;248279	248276			6	
LDPTGTFEK	1	Unmodified	1006.4971	0.49712625	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.423	39.788	2	0.00016949	35062	160511_QHF_FH_JSI9i_1	87.639	51.244			1.3002	1.2157	9.8816	4	0	Median	1.4191	1.1351	NaN	1	0	Median	0.99562	1.1896	NaN	1	0	Median	1.2692	1.2423	NaN	1	0	Median	1.332	1.4273	NaN	1	0	Median	1172000000	552590000	619440000	251470000	104850000	146620000	295390000	156020000	139370000	346910000	166060000	180850000	278270000	125660000	152610000	29580	2754	27980	183715;183716;183717;183718	248280;248281;248282;248283;248284;248285;248286	248285			7	
LDPVLYRK	1	Unmodified	1002.5862	0.58621603	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	33.461	32.957	3	0.016222	27810	160511_QHF_FH_JSI12i_3	41.029	31.815			0.64187	0.7191	42.362	3	1	Median	NaN	NaN	NaN	0	0	Median	0.64187	0.7191	NaN	1	0	Median	1.133	1.0542	NaN	1	0	Median	0.44897	0.45241	NaN	1	1	Median	405400000	249130000	156260000	0	0	0	103330000	63240000	40094000	111190000	61302000	49885000	190880000	124590000	66286000	29581	3903	27981	183719;183720;183721	248287;248288	248288			1	
LDQAVLDLQR	0	Unmodified	1169.6404	0.64043645	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		53.51	52.71	2	0.0018127	47896	160511_QHF_FH_JSI11i_1	63.624	34.897			1.322	1.1869	3.6799	2	0	Median	1.4676	1.2182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1909	1.1564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154920000	65096000	89823000	79689000	22376000	57313000	0	0	0	75229000	42720000	32510000	0	0	0	29582	4704	27982	183722;183723;183724	248289;248290;248291	248289			3	
LDQEEAQYQREYSEFK	1	Unmodified	2061.928	0.92796385	2537	Q14457	BECN1	Beclin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.056	56.401	2	0.057613	51258	160511_QHF_FH_JSI12i_1	45.829	22.944			1.0742	1.0789	3.8034	4	0	Median	1.2954	1.0485	NaN	1	0	Median	0.964	1.1472	NaN	1	0	Median	1.1236	1.0753	NaN	1	0	Median	1.027	1.0826	NaN	1	0	Median	224380000	109730000	114650000	50131000	23291000	26840000	63610000	30447000	33163000	48687000	24703000	23984000	61952000	31287000	30666000	29583	2537	27983	183725;183726;183727;183728	248292	248292			1	
LDQEVAEVDK	1	Unmodified	1144.5612	0.56118307	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.8	26.532	2	0.0042247	23052	160511_QHF_FH_JSI9i_1	66.664	36.028			2.7436	2.2341	NaN	1	1	Median	2.7436	2.2341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58798000	17414000	41384000	58798000	17414000	41384000	0	0	0	0	0	0	0	0	0	29584	4319	27984	183729	248293	248293			1	
LDQLDGSFDDPNTVVAK	1	Unmodified	1832.8792	0.87922275	5341	Q9UJC3	HOOK1	Protein Hook homolog 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	64.251	63.202	2	4.4372E-07	57581	160511_QHF_FH_JSI12i_1	92.856	79.194			1.1211	0.90404	NaN	1	1	Median	1.1211	0.90404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13296000	7146400	6149500	13296000	7146400	6149500	0	0	0	0	0	0	0	0	0	29585	5341	27985	183730;183731;183732	248294;248295;248296	248294			3	
LDQLIYIPLPDEK	1	Unmodified	1555.8498	0.84976052	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.23	0.421	10	3								3	3	4	3	96.523	96.285	2;3	2.9558E-10	87247	160511_QHF_FH_JSI10i_1	165.7	165.7			0.79952	0.91394	48.965	11	1	Plateau	1.192	0.97818	29.449	3	0	Plateau	0.79914	0.94247	35.346	3	0	Plateau	0.95344	0.94085	7.5666	2	0	Median	0.8378	0.89657	86.571	3	1	Plateau	2013000000	1089000000	923950000	280780000	128330000	152450000	699720000	415880000	283840000	534030000	286240000	247800000	498450000	258580000	239870000	29586	1846	27986	183733;183734;183735;183736;183737;183738;183739;183740;183741;183742;183743;183744;183745	248297;248298;248299;248300;248301;248302;248303;248304;248305;248306;248307;248308;248309;248310;248311;248312;248313;248314;248315;248316;248317;248318;248319;248320;248321;248322;248323;248324;248325;248326;248327;248328;248329;248330	248317			34	
LDQMDEDELER	0	Unmodified	1391.5875	0.58747418	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.95	37.251	2	0.00037255	33640	160511_QHF_FH_JSI12i_1	73.067	62.543			1.1711	1.1181	30.004	3	0	Median	2.032	1.7275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1711	1.1181	NaN	1	0	Median	0.93175	0.97165	NaN	1	0	Median	120480000	58681000	61802000	29042000	12232000	16810000	0	0	0	62152000	33637000	28515000	29289000	12813000	16477000	29587	171	27987	183746;183747;183748	248331;248332;248333;248334;248335	248333			4	
LDQNVNEAMPSLK	1	Unmodified	1457.7184	0.71842877	3610	Q8NC54	KCT2	Keratinocyte-associated transmembrane protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				52.155	50.955	2	6.0666E-06	45348	160511_QHF_FH_JSI9i_1	127.17	108.86			0.57403	0.4676	NaN	1	1	Median	0.57403	0.4676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52080000	29920000	22160000	52080000	29920000	22160000	0	0	0	0	0	0	0	0	0	29588	3610	27988	183749	248336	248336			1	
LDQPMTEIVSR	0	Unmodified	1287.6493	0.64928657	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	51.394	50.812	2	0.00053453	45215	160511_QHF_FH_JSI9i_1	77.379	49.205			0.90001	0.93291	33.436	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54493	0.53964	NaN	1	1	Median	0.92024	0.96081	4.1669	2	2	Median	376720000	216350000	160370000	0	0	0	0	0	0	111370000	75966000	35400000	265360000	140380000	124970000	29589	1208	27989	183750;183751;183752;183753	248337;248338;248339;248340	248340			4	
LDQQTLPLGGR	0	Unmodified	1196.6513	0.65133548	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.342	43.676	2	5.4332E-06	39738	160511_QHF_FH_JSI12i_1	110.76	84.862			0.95958	1.1391	10.636	4	1	Linear	1.479	1.2168	NaN	1	1	Median	0.91164	1.0664	NaN	1	0	Median	1.0267	1.007	NaN	1	0	Median	1.1769	1.2599	NaN	1	0	Median	428840000	183740000	245100000	71007000	32834000	38173000	140490000	47126000	93366000	110310000	56993000	53316000	107030000	46784000	60249000	29590	2140	27990	183754;183755;183756;183757	248341;248342;248343;248344;248345	248342			5	
LDQTFPFSLMR	0	Unmodified	1353.6751	0.67510739	3070	Q6NTF9	RHBDD2	Rhomboid domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			94.184	93.87	2	0.005137	83151	160511_QHF_FH_JSI10i_2	53.751	22.257			0.78929	0.93909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78929	0.93909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18004000	11657000	6347200	0	0	0	18004000	11657000	6347200	0	0	0	0	0	0	29591	3070	27991	183758	248346	248346			1	
LDQWLTTMLLR	0	Unmodified	1388.7486	0.74860669	1838;4649	P54920;Q9H115	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	2	2	1	94.562	88.979	2	6.1532E-10	48246	160513_QHF_FH_JSI10Kac_6	131.28	81.471			1.025	1.0685	23.399	6	2	Median	1.3218	1.1086	NaN	1	0	Median	0.84607	1.0202	34.5	2	1	Median	0.96335	0.93697	36.642	2	1	Median	0.98113	1.0299	NaN	1	0	Median	1146900000	575270000	571620000	190590000	71295000	119300000	381090000	214080000	167010000	449830000	222910000	226920000	125380000	66986000	58393000	29592	1838;4649	27992	183759;183760;183761;183762;183763;183764	248347;248348;248349;248350;248351;248352;248353	248353			7	
LDRLDLAR	0	Unmodified	970.55598	0.55597854	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							3	3	1	1	30.398	29.456	2;3	0.0029977	25851	160511_QHF_FH_JSI10i_2	55.549	32.121			0.92671	0.9393	16.595	8	0	Median	1.1189	1.1568	12.574	3	0	Plateau	0.91494	1.0687	15.237	3	0	Plateau	0.93863	0.89664	NaN	1	0	Median	0.68729	0.68767	NaN	1	0	Median	1142000000	575170000	566840000	358430000	156920000	201500000	556950000	290220000	266720000	184430000	105330000	79102000	42200000	22692000	19508000	29593	178	27993	183765;183766;183767;183768;183769;183770;183771;183772	248354;248355;248356;248357;248358;248359;248360;248361	248361			8	
LDRLTSTATK	1	Unmodified	1104.6139	0.61388734	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		14.005	13.303	2;3	0.0056972	10586	160511_QHF_FH_JSI10i_3	43.897	31.734			0.93353	0.86106	19.452	4	2	Median	0.99984	0.81229	16.988	2	1	Median	0.9948	1.1353	NaN	1	0	Median	0.85188	0.80944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	531030000	211890000	319140000	297410000	104500000	192920000	150100000	74918000	75185000	83516000	32478000	51038000	0	0	0	29594	1035	27994	183773;183774;183775;183776	248362;248363;248364;248365;248366;248367	248364			6	
LDSEDKDK	2	Acetyl (K)	990.45057	0.45056999	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1			By MS/MS		12	0					1							1		12.405	5.1388	2	0.0047034	4140	160513_QHF_FH_JSI11Kac_2	87.476	17.651			0.47474	0.45467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47474	0.45467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15494000	11120000	4374200	0	0	0	0	0	0	15494000	11120000	4374200	0	0	0	29595	1033	27995	183777	248368;248369	248368	855		2	
LDSEQLPLRPK	1	Unmodified	1294.7245	0.72450043	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		41.78	41.78	3	0.026946	36937	160511_QHF_FH_JSI11i_3	37.18	27.747			1.0794	1.0141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0794	1.0141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45931000	21263000	24669000	0	0	0	0	0	0	45931000	21263000	24669000	0	0	0	29596	5664	27996	183778	248370	248370			1	
LDSFAIPESLK	1	Unmodified	1218.6496	0.64960415	4784	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8.5	7.5	1								1		1	1		54.914	50.456	2;3	0.016659	65713	160511_QHF_FH_JSI11i_1	50.108	27.578			0.85341	0.91279	17.477	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85281	1.0329	NaN	1	0	Median	0.85402	0.80668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49637000	27481000	22155000	0	0	0	26441000	14229000	12212000	23196000	13252000	9943600	0	0	0	29597	4784	27997	183779;183780	248371;248372	248371			2	
LDSFVAQWLQPHR	0	Unmodified	1595.8209	0.82086043	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				84.265	83.013	3	0.0080673	68237	160511_QHF_FH_JSI9i_3	33.192	21.046			0.74346	0.62063	NaN	1	1	Median	0.74346	0.62063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13764000	6430800	7333400	13764000	6430800	7333400	0	0	0	0	0	0	0	0	0	29598	2693	27998	183781	248373	248373			1	
LDSGDLLQQAQEIRK	1	Unmodified	1712.9057	0.90571227	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.703	3	7	4							2	3	5	4	64.201	63.632	2;3	1.9072E-10	56415	160511_QHF_FH_JSI11i_3	153.63	119.25			0.93823	0.98529	11.685	14	1	Median	1.1778	1.0157	3.516	2	0	Median	0.87394	1.0886	6.9808	3	0	Median	1.0037	0.94279	4.01	5	1	Median	0.89666	0.93201	21.4	4	0	Median	3019800000	1544500000	1475300000	347030000	171830000	175200000	550850000	249390000	301470000	1246200000	660510000	585690000	875690000	462790000	412890000	29599	3167	27999	183782;183783;183784;183785;183786;183787;183788;183789;183790;183791;183792;183793;183794;183795	248374;248375;248376;248377;248378;248379;248380;248381;248382;248383;248384;248385;248386;248387;248388;248389;248390;248391	248376			18	
LDSGKELHINLIPNK	2	Acetyl (K)	1731.9519	0.95193418	880	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	1	0	0	1			By MS/MS		15	0								1				1		77.641	67.005	3	0.00018628	35632	160513_QHF_FH_JSI11Kac_5	81.992	64.71			0.23082	0.22956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23082	0.22956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19963000	16265000	3698800	0	0	0	0	0	0	19963000	16265000	3698800	0	0	0	29600	880	28000	183796	248392	248392	611		1	
LDSLPPVIK	1	Unmodified	980.59063	0.59063271	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.354	57.708	2	0.0018695	52210	160511_QHF_FH_JSI10i_1	67.169	51.025			1.1834	1.0822	6.5922	3	0	Median	1.2253	1.0069	NaN	1	0	Median	0.91359	1.0822	NaN	1	0	Median	1.1834	1.1486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	211440000	107260000	104180000	67470000	34466000	33004000	62537000	31297000	31240000	81430000	41498000	39931000	0	0	0	29601	3657	28001	183797;183798;183799	248393;248394;248395;248396	248395			4	
LDSLQDIGMDHQALLK	1	Unmodified	1795.9138	0.91383411	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	71.519	70.7	3	1.7469E-05	62339	160511_QHF_FH_JSI9i_2	100.41	88.495			0.74208	0.75439	4.4969	2	2	Median	0.87067	0.73078	NaN	1	1	Median	0.63248	0.77876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144270000	86462000	57808000	61910000	35158000	26751000	82360000	51304000	31057000	0	0	0	0	0	0	29602	2100	28002	183800;183801;183802	248397;248398;248399	248398			3	
LDSPAGTALSPSGHTK	1	Unmodified	1537.7736	0.77363546	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.24	5.38	2	8	6				1	4		3	5	8	5	33.716	30.612	2;3	9.38E-17	26590	160511_QHF_FH_JSI11i_3	122.45	95.118			0.94016	0.94665	18.182	19	5	Median	1.0923	0.94095	7.0516	3	2	Median	0.80179	0.94121	27.096	5	2	Median	0.92319	0.92371	19.72	6	1	Median	0.89242	0.99717	9.2138	5	0	Median	2544900000	1360100000	1184800000	397000000	196300000	200700000	568740000	336300000	232440000	901830000	498340000	403490000	677340000	329170000	348170000	29603	1394	28003	183803;183804;183805;183806;183807;183808;183809;183810;183811;183812;183813;183814;183815;183816;183817;183818;183819;183820;183821;183822;183823	248400;248401;248402;248403;248404;248405;248406;248407;248408;248409;248410;248411;248412;248413;248414;248415;248416;248417;248418;248419;248420;248421;248422;248423;248424	248401			25	
LDSQHSHLTLPYYK	1	Unmodified	1700.8522	0.85222014	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		46.379	46.379	4	0.022376	40880	160511_QHF_FH_JSI11i_3	28.632	23.969			2.2468	2.1226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2468	2.1226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27148000	9686600	17462000	0	0	0	0	0	0	27148000	9686600	17462000	0	0	0	29604	3935	28004	183824	248425	248425			1	
LDSQKHIDFSLR	1	Acetyl (K)	1499.7732	0.77324153	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.136	57.531	3	0.009424	31103	160513_QHF_FH_JSI11Kac_6	41.577	21.196			0.30662	0.29721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30662	0.29721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101150000	84416000	16735000	0	0	0	0	0	0	101150000	84416000	16735000	0	0	0	29605	1593	28005	183825	248426	248426	1617		1	
LDSQNAQGYEWIFIAWSPDHSHVR	0	Unmodified	2855.3416	0.34157567	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	89.248	79.806	4	0.0042873	42890	160513_QHF_FH_JSI12Kac_6	53.089	40.16			2.2086	2.3563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2086	2.3563	NaN	1	1	Median	44179000	12910000	31269000	0	0	0	0	0	0	0	0	0	44179000	12910000	31269000	29606	2306	28006	183826	248427	248427			1	
LDSSAQFGYYFR	0	Unmodified	1452.6674	0.66737948	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.199	67.689	2	5.0922E-06	36830	160513_QHF_FH_JSI10Kac_6	107.55	96.725			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29607	1557	28007	183827	248428	248428			1	
LDSSDIYNELK	1	Unmodified	1295.6245	0.62451161	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.264	64.65	2	6.4514E-05	58665	160511_QHF_FH_JSI12i_1	93.096	74.001			1.06	1.0142	9.6086	4	0	Median	1.1101	0.8916	NaN	1	0	Median	0.88528	1.0358	NaN	1	0	Median	1.0173	0.99297	NaN	1	0	Median	1.1045	1.123	NaN	1	0	Median	597700000	306380000	291310000	177760000	81929000	95835000	160700000	89107000	71589000	126700000	71381000	55322000	132530000	63964000	68568000	29608	1316	28008	183828;183829;183830;183831	248429;248430;248431;248432;248433;248434;248435	248431			7	
LDSSETTMVK	1	Unmodified	1109.5274	0.5274401	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		33.492	24.822	2	0.0043305	14775	160513_QHF_FH_JSI11Kac_3	64.04	30.778			0.88611	0.94398	2.9317	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81802	0.96376	NaN	1	0	Median	0.95988	0.92462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10671000	5686900	4983900	0	0	0	3460400	2059100	1401300	7210300	3627700	3582600	0	0	0	29609	5233	28009	183832;183833	248436	248436			1	
LDSSIISEGK	1	Unmodified	1047.5448	0.54480473	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	42.689	38.94	2	0.0027322	34850	160511_QHF_FH_JSI10i_1	60.828	31.911			0.62319	0.60665	42.606	3	3	Median	1.5591	1.2615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62319	0.60665	NaN	1	1	Median	0.57147	0.59969	NaN	1	1	Median	116890000	73859000	43026000	50068000	29815000	20253000	0	0	0	4164300	2438400	1725900	62653000	41605000	21047000	29610	1347	28010	183834;183835;183836;183837	248437;248438;248439;248440	248439			4	
LDSSPSVSSTLAAK	1	Unmodified	1361.7038	0.70382456	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.4	4.8	4					1				1	1	3		39.828	39.481	2	1.0694E-18	34940	160511_QHF_FH_JSI9i_1	143.97	110.71			0.81318	0.87516	1.0598	2	1	Median	NaN	NaN	NaN	0	0	Median	0.73851	0.86862	NaN	1	0	Median	0.8954	0.88174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	474140000	274140000	200000000	0	0	0	234030000	145570000	88468000	240110000	128570000	111530000	0	0	0	29611	2409	28011	183838;183839;183840;183841;183842	248441;248442;248443;248444;248445	248445			5	
LDSTDFTGTIK	1	Unmodified	1196.5925	0.5924832	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5.33	5.44	1	1				1					1		2	55.669	52.067	2	0.0010908	46973	160511_QHF_FH_JSI12i_1	66.19	43.45			1.0432	1.1088	20.648	3	1	Median	NaN	NaN	NaN	0	0	Median	0.66714	0.84528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1001	1.1856	9.4669	2	0	Median	1153400000	614760000	538590000	0	0	0	41016000	27571000	13445000	0	0	0	1112300000	587190000	525150000	29612	793	28012	183843;183844;183845	248446;248447;248448	248446			3	
LDSTQLQQLHNQVLLEQHQLQNPPPSSPK	1	Unmodified	3316.7164	0.71640194	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	76.081	75.732	4	4.1824E-15	65864	160511_QHF_FH_JSI12i_3	96.913	82.32			0.79801	0.84368	10.622	3	2	Plateau	0.79801	0.70431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91105	0.87084	NaN	1	0	Median	0.77333	0.78958	NaN	1	1	Median	414360000	231480000	182870000	32991000	14655000	18336000	0	0	0	182610000	88984000	93629000	198750000	127840000	70907000	29613	3306	28013	183846;183847;183848	248449;248450;248451;248452;248453;248454;248455	248455			7	
LDSTQVGDFLGDSAR	0	Unmodified	1579.7478	0.74781464	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		68.245	67.962	2	1.6431E-07	61816	160511_QHF_FH_JSI11i_1	92.792	66.085			0.74735	0.88468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74735	0.88468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37536000	23068000	14468000	0	0	0	37536000	23068000	14468000	0	0	0	0	0	0	29614	5718	28014	183849;183850;183851	248456;248457;248458	248456			3	
LDSTQVGEFLGDNDK	1	Unmodified	1636.758	0.75804498	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		67.703	67.394	2	2.368E-11	61280	160511_QHF_FH_JSI11i_1	102.62	76.578			0.73441	0.86718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73441	0.86718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15419000	8577200	6842000	0	0	0	15419000	8577200	6842000	0	0	0	0	0	0	29615	5719	28015	183852;183853;183854	248459;248460;248461	248459			3	
LDSVIEFSIPDSLLIR	0	Unmodified	1815.9982	0.99821567	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	102.09	101.95	2	0.00014035	87841	160511_QHF_FH_JSI12i_2	137.59	105.09			1.0472	1.1022	13.978	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2016	1.2167	NaN	1	0	Median	0.9127	0.99847	NaN	1	0	Median	445650000	211790000	233860000	0	0	0	0	0	0	255040000	111930000	143110000	190610000	99855000	90753000	29616	1835	28016	183855;183856	248462	248462			0	
LDSVPVEEQEEFK	1	Unmodified	1547.7355	0.73551862	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	52.347	51.729	2	4.1009E-05	46001	160511_QHF_FH_JSI9i_1	114.86	88.744			0.78103	0.75455	21.315	5	3	Median	0.90033	0.75455	NaN	1	0	Median	0.78103	0.8855	NaN	1	0	Median	0.8214	0.7918	35.253	2	2	Median	0.63545	0.63694	NaN	1	1	Median	148590000	80907000	67687000	33032000	18276000	14756000	31828000	15702000	16126000	58515000	29151000	29364000	25218000	17778000	7440600	29617	4557	28017	183857;183858;183859;183860;183861	248463;248464;248465;248466;248467	248467			5	
LDTDDLDEIEK	1	Unmodified	1304.5984	0.59835644	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.182	55.526	2	4.9169E-07	50305	160511_QHF_FH_JSI12i_1	115.57	82.196			0.82013	0.88701	7.6984	4	0	Median	1.0845	0.88457	NaN	1	0	Median	0.80447	0.9396	NaN	1	0	Median	0.79621	0.78294	NaN	1	0	Median	0.83609	0.88946	NaN	1	0	Median	876970000	467750000	409220000	125780000	59466000	66310000	238620000	122550000	116070000	224080000	117660000	106430000	288490000	168070000	120420000	29618	5017;5423	28018	183862;183863;183864;183865	248468;248469;248470;248471;248472;248473;248474;248475;248476;248477;248478	248472			11	
LDTETEGVPSTAIR	0	Unmodified	1487.7468	0.74675201	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.81	44.417	2	0.00094301	40175	160511_QHF_FH_JSI11i_1	64.64	47.727			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29619	1252	28019	183866	248479	248479			1	
LDTGPQSLSGK	1	Unmodified	1101.5666	0.5666028	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.908	26.64	2	0.046776	22978	160511_QHF_FH_JSI9i_1	36.395	8.6785			1.0047	0.83712	NaN	1	0	Median	1.0047	0.83712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204480000	105870000	98610000	204480000	105870000	98610000	0	0	0	0	0	0	0	0	0	29620	1432	28020	183867	248480	248480			1	
LDTHPAMVTVLEMGAAR	0	Oxidation (M)	1826.9019	0.90188922	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								1	3	2	62.501	62.359	3	4.2185E-05	53806	160511_QHF_FH_JSI11i_3	75.463	65.322			0.94703	1.1636	21.978	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2235	1.1366	26.256	2	0	Median	1.1812	1.198	27.057	2	0	Median	372870000	189590000	183280000	0	0	0	0	0	0	150030000	73541000	76484000	222840000	116050000	106790000	29621	2328	28021	183868;183869;183870;183871;183872;183873	248481;248482;248483;248484;248485;248486;248487;248488	248481		1921;1922	8	
LDTHPAMVTVLEMGAAR	0	Unmodified	1810.907	0.9069746	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.13	4.62		13	7						3	5	4	8	6	77.359	75.174	2;3	2.5455E-30	66169	160511_QHF_FH_JSI12i_3	226.04	213.46			0.94865	0.99337	11.285	18	4	Median	1.2283	1.0658	6.7097	3	0	Plateau	0.81446	0.99673	11.309	4	0	Median	1.013	0.99063	12.768	5	1	Median	0.89037	0.95657	10.163	6	3	Median	4803700000	2350900000	2452800000	530260000	235730000	294530000	603400000	307360000	296030000	1751100000	824720000	926350000	1919000000	983100000	935910000	29622	2328	28021	183874;183875;183876;183877;183878;183879;183880;183881;183882;183883;183884;183885;183886;183887;183888;183889;183890;183891;183892;183893;183894;183895;183896	248489;248490;248491;248492;248493;248494;248495;248496;248497;248498;248499;248500;248501;248502;248503;248504;248505;248506;248507;248508;248509;248510;248511;248512;248513;248514;248515;248516;248517;248518;248519;248520;248521;248522;248523;248524;248525;248526	248522			37	
LDTIFFAK	1	Unmodified	953.52222	0.52221879	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.69	2	4					1	4	1	2	4	4	2	74.275	68.77	2	0.0028012	34754	160513_QHF_FH_JSI9Kac_5	88.942	63.206			0.92867	0.97166	24.642	12	2	Median	1.1552	0.98682	33.531	2	1	Median	0.52436	0.61203	39.888	4	1	Linear	0.97701	0.97316	14.125	4	0	Median	0.87536	0.97166	0.75853	2	0	Median	604450000	321830000	282630000	88821000	40988000	47832000	147230000	89334000	57894000	235610000	122170000	113440000	132800000	69337000	63459000	29623	5663	28022	183897;183898;183899;183900;183901;183902;183903;183904;183905;183906;183907;183908	248527;248528;248529;248530;248531;248532;248533;248534;248535;248536;248537	248528			11	
LDTLCDLYETLTITQAVIFLNTR	0	Unmodified	2712.4044	0.40441843	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.97	96.246	3	3.1975E-07	56850	160513_QHF_FH_JSI10Kac_6	76.889	0			1.2585	1.444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2585	1.444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84908000	32527000	52381000	0	0	0	84908000	32527000	52381000	0	0	0	0	0	0	29624	2519	28023	183909	248538	248538			1	
LDTMNTTCVDR	0	Unmodified	1324.5751	0.57513535	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	28.806	28.365	2	0.0028198	25405	160511_QHF_FH_JSI12i_1	56.563	44.715			1.0397	1.1285	11.288	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92946	1.0419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.163	1.2223	NaN	1	0	Median	75670000	32880000	42790000	0	0	0	33308000	17819000	15490000	0	0	0	42362000	15061000	27300000	29625	2284	28024	183910;183911	248539;248540	248539			2	
LDTPLYFSYSHLVCR	0	Unmodified	1869.9084	0.90835481	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		81.762	73.914	3	2.8162E-24	41542	160513_QHF_FH_JSI10Kac_6	153.24	131.78			0.84484	1.1219	7.1245	3	2	Plateau	1.2841	1.1219	NaN	1	1	Median	0.84484	1.0048	NaN	1	0	Median	1.1737	1.148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	385220000	189850000	195370000	81432000	38473000	42959000	213910000	110310000	103600000	89878000	41061000	48816000	0	0	0	29626	2806	28025	183912;183913;183914	248541;248542;248543	248543			3	
LDTSQWPLLLK	1	Unmodified	1312.7391	0.73908786	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	93.341	92.976	2	9.7241E-05	81590	160511_QHF_FH_JSI11i_2	106.2	81.061			0.89252	0.84696	16.487	5	0	Median	0.95641	0.84429	NaN	1	0	Median	0.60626	0.67428	NaN	1	0	Median	0.93797	0.92481	12.435	2	0	Median	0.89252	1.0023	NaN	1	0	Median	167590000	87950000	79638000	27956000	16393000	11563000	19897000	9888600	10008000	69884000	32115000	37770000	49851000	29554000	20297000	29627	453	28026	183915;183916;183917;183918;183919;183920	248544;248545;248546;248547;248548;248549;248550;248551	248550			8	
LDVATDNFFQNPELYIR	0	Unmodified	2054.0109	0.010905622	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.06	100.86	2	1.8526E-21	86760	160511_QHF_FH_JSI12i_2	212.83	189.46			0.77949	0.87554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77949	0.87554	NaN	1	1	Median	94989000	47954000	47034000	0	0	0	0	0	0	0	0	0	94989000	47954000	47034000	29628	4091	28027	183921	248552	248552			1	
LDVGEAMAPPSHR	0	Unmodified	1378.6663	0.66633362	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	40.256	39.488	2;3	7.7139E-05	33721	160511_QHF_FH_JSI12i_2	52.821	48.278			0.90044	1.0087	10.874	5	1	Median	1.1912	1.0339	NaN	1	0	Median	0.72644	0.87436	NaN	1	0	Median	0.99521	0.96428	17.575	2	1	Median	0.90044	1.0087	NaN	1	0	Median	421160000	212840000	208320000	105990000	49449000	56539000	117280000	70488000	46796000	126300000	55748000	70551000	71590000	37158000	34432000	29629	3483	28028	183922;183923;183924;183925;183926	248553;248554;248555;248556;248557;248558;248559;248560	248555			8	
LDVGNAEVK	1	Unmodified	943.49746	0.4974606	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	2	2	1	31.288	25.845	2	0.0031082	26549	160511_QHF_FH_JSI10i_1	61.765	21.496			1.0272	0.78728	22.592	7	0	Linear	1.2641	1.0306	4.9193	2	0	Median	0.9323	1.1059	14.06	2	0	Median	0.96238	0.94081	30.42	2	0	Median	0.62028	0.65981	NaN	1	0	Median	3359500000	1921100000	1438400000	613930000	325540000	288400000	897870000	531410000	366460000	915360000	521360000	393990000	932310000	542740000	389560000	29630	1741	28029	183927;183928;183929;183930;183931;183932;183933	248561;248562;248563;248564;248565;248566;248567;248568;248569;248570;248571	248566			11	
LDVGNAEVKLEEENR	1	Unmodified	1713.8533	0.85334235	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	50.807	49.411	3	4.4436E-05	42303	160511_QHF_FH_JSI12i_2	89.484	70.241			0.97956	1.0755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97956	1.0755	NaN	1	0	Median	181230000	82746000	98484000	0	0	0	0	0	0	0	0	0	181230000	82746000	98484000	29631	1741	28030	183934	248572;248573	248573			2	
LDVGNFSWGSECCTR	0	Unmodified	1786.7403	0.7403032	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							2	2	3	2	72.259	71.624	2	1.3125E-06	62238	160511_QHF_FH_JSI12i_3	133.71	129.69			1.0793	1.0746	19.004	6	1	Median	1.138	0.98959	NaN	1	1	Median	0.94113	1.1669	NaN	1	0	Median	0.93789	0.89427	5.9662	2	0	Median	1.3043	1.3243	9.5058	2	0	Median	198340000	103710000	94630000	19268000	8835800	10432000	28172000	18131000	10042000	91745000	49818000	41927000	59158000	26928000	32230000	29632	1985	28031	183935;183936;183937;183938;183939;183940;183941;183942;183943	248574;248575;248576;248577;248578;248579;248580;248581;248582;248583;248584;248585	248585			12	
LDVGNFSWGSECCTRK	1	Unmodified	1914.8353	0.83526622	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				63.109	61.601	3	0.018468	50521	160511_QHF_FH_JSI9i_3	37.645	27.178			1.1239	0.91771	NaN	1	1	Median	1.1239	0.91771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39760000	22630000	17130000	39760000	22630000	17130000	0	0	0	0	0	0	0	0	0	29633	1985	28032	183944;183945	248586;248587	248586			2	
LDVPEDLR	0	Unmodified	955.49746	0.4974606	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	49.385	48.619	2	0.011665	43290	160511_QHF_FH_JSI9i_1	53.968	32.421			1.2107	1.1351	5.2531	3	0	Plateau	1.3375	1.0925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2107	1.1351	NaN	1	0	Median	0.95207	1.0231	NaN	1	0	Median	158580000	64301000	94282000	47884000	20136000	27748000	0	0	0	67069000	24628000	42440000	43630000	19536000	24094000	29634	2248	28033	183946;183947;183948	248588;248589;248590	248590			3	
LDVQFSGLTK	1	Unmodified	1106.5972	0.59717465	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.09	4	4					5			2	4	4	3	67.53	63.448	2	3.4399E-11	55462	160511_QHF_FH_JSI11i_2	150.08	94.065			0.96017	1.0314	31.728	12	3	Median	1.0521	0.8771	25.344	2	1	Median	0.84751	1.0395	2.8999	3	1	Plateau	1.0503	1.0366	48.292	4	0	Median	1.3217	1.4148	37.458	3	1	Plateau	2153600000	934490000	1219200000	333720000	146610000	187110000	617970000	286820000	331150000	592430000	284420000	308010000	609530000	216650000	392890000	29635	1192	28034	183949;183950;183951;183952;183953;183954;183955;183956;183957;183958;183959;183960;183961	248591;248592;248593;248594;248595;248596;248597;248598;248599;248600;248601;248602;248603;248604;248605;248606	248604			16	
LDVSYEPMIVK	1	Oxidation (M)	1308.6635	0.66353965	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		24.125	24.125	3	0.019682	20501	160511_QHF_FH_JSI11i_3	31.431	12.685			0.99205	0.9377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99205	0.9377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65564000	32678000	32886000	0	0	0	0	0	0	65564000	32678000	32886000	0	0	0	29636	545	28035	183962	248607	248607		203	1	
LDVTILSPSR	0	Unmodified	1099.6237	0.62372375	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		14.5	0.5							1	1		1		1		73.779	63.073	2	0.023781	34192	160513_QHF_FH_JSI11Kac_4	46.158	29.955			0.97348	0.87931	56.098	2	0	Median	1.5679	1.3074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60439	0.59138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5780900	2825400	2955400	2874200	1137800	1736400	0	0	0	2906700	1687600	1219100	0	0	0	29637	512	28036	183963;183964	248608;248609	248609			2	
LDVTILSPSRK	1	Unmodified	1227.7187	0.71868677	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6		2	7					1	3	4	4	4	1	56.453	52.934	2;3	1.6579E-10	46690	160511_QHF_FH_JSI11i_3	115.29	97.813			0.96386	0.88907	30.725	13	2	Median	1.1083	0.91578	11.201	4	0	Median	1.0179	1.1728	34.878	4	1	Linear	0.98121	0.92434	44.55	4	1	Median	0.77498	0.78988	NaN	1	0	Median	1725300000	801810000	923480000	481020000	206480000	274540000	547320000	266780000	280540000	660120000	307620000	352500000	36817000	20917000	15900000	29638	512	28037	183965;183966;183967;183968;183969;183970;183971;183972;183973;183974;183975;183976;183977	248610;248611;248612;248613;248614;248615;248616;248617;248618;248619;248620;248621;248622;248623;248624;248625;248626	248613			17	
LDVTLAK	1	Unmodified	758.4538	0.45380487	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			1	2	2	3	41.554	39.594	2	0.017903	35444	160511_QHF_FH_JSI10i_1	60.76	12.586			0.9834	1.1015	15.065	8	0	Median	1.4626	1.195	NaN	1	0	Median	0.8512	1.0245	13.337	2	0	Median	1.0955	1.0748	17.431	2	0	Median	1.0904	1.1489	20.253	3	0	Plateau	1003100000	504780000	498340000	137390000	56509000	80881000	296530000	163870000	132660000	305750000	152780000	152970000	263450000	131620000	131830000	29639	1298	28038	183978;183979;183980;183981;183982;183983;183984;183985	248627;248628;248629;248630;248631;248632;248633;248634;248635;248636	248633			10	
LDVTLGDLTK	1	Unmodified	1073.5968	0.5968403	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	70.744	70.212	2	0.0078309	62430	160511_QHF_FH_JSI9i_1	50.978	26.948			0.83027	0.80273	15.123	4	0	Median	0.80196	0.67862	NaN	1	0	Median	0.6171	0.71711	NaN	1	0	Median	0.93078	0.89857	NaN	1	0	Median	0.85957	0.90894	NaN	1	0	Median	181600000	96070000	85532000	30954000	15805000	15149000	49510000	29616000	19894000	52062000	26650000	25412000	49077000	24000000	25077000	29640	280	28039	183986;183987;183988;183989	248637;248638;248639;248640	248640			4	
LDVTLGPVPEIGGSEAPAPQNK	1	Unmodified	2188.1376	0.1375627	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	83.157	82.727	2;3	3.7006E-18	75319	160511_QHF_FH_JSI11i_1	151.44	130.19			0.97118	0.85458	35.688	9	3	Median	0.99179	0.80396	3.5323	2	0	Median	0.86808	1.0085	60.131	3	3	Median	0.92917	0.87237	7.7595	2	0	Median	0.92839	0.97807	19.087	2	0	Median	340650000	161660000	178990000	75562000	37018000	38544000	97464000	40856000	56608000	91674000	47381000	44293000	75947000	36405000	39543000	29641	4322	28040	183990;183991;183992;183993;183994;183995;183996;183997;183998	248641;248642;248643;248644;248645;248646;248647;248648;248649;248650;248651;248652;248653;248654;248655;248656	248644			16	
LDVTSVEDYK	1	Unmodified	1167.5659	0.5659341	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	57.62	53.199	2	9.8405E-10	48043	160511_QHF_FH_JSI11i_1	136.63	112.48			1.0455	1.0313	12.311	7	0	Median	1.2273	0.97353	NaN	1	0	Median	0.89794	1.0596	27.821	2	0	Median	1.0634	1.0341	0.39072	2	0	Median	0.96593	1.0483	9.1396	2	0	Median	4093200000	2025100000	2068100000	984140000	426190000	557950000	1016900000	554760000	462130000	1114600000	522520000	592060000	977590000	521640000	455940000	29642	1630	28041	183999;184000;184001;184002;184003;184004;184005	248657;248658;248659;248660;248661;248662;248663;248664;248665;248666;248667;248668;248669;248670;248671;248672;248673;248674;248675	248658			19	
LDVTTQTPLTPEQLR	0	Unmodified	1710.9152	0.91521432	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	69.087	68.52	2	2.3604E-30	62265	160511_QHF_FH_JSI11i_1	195.25	160.53			0.96829	0.98539	13.019	4	1	Median	1.2737	1.0216	NaN	1	0	Median	0.65575	0.78099	NaN	1	1	Median	1.0542	1.036	NaN	1	0	Median	0.88935	0.95048	NaN	1	0	Median	166340000	86177000	80166000	39717000	20595000	19122000	37165000	21171000	15994000	45046000	21508000	23538000	44415000	22904000	21511000	29643	2907	28042	184006;184007;184008;184009	248676;248677;248678;248679	248676			4	
LDVTVQSFGWSDR	0	Unmodified	1508.726	0.72595699	3614;2844	Q52LJ0;Q8NCA5	FAM98B;FAM98A	Protein FAM98B;Protein FAM98A	no	no	0	0	0	0				By MS/MS	11	0				1									1	74.596	65.981	3	0.043537	25966	160513_QHF_FH_JSI12Kacf_1	29.299	12.017			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29644	2844;3614	28043	184010	248680	248680			1	
LDVYTQWHQQSQSTK	1	Unmodified	1847.8802	0.8802258	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			51.66	42.739	3	0.049079	23618	160513_QHF_FH_JSI10Kac_6	29.341	22.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29645	3805	28044	184011;184012	248681;248682	248682			2	
LDVYTQWHQQSQSTKPK	2	Unmodified	2073.028	0.02795267	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	2	2	39.132	38.335	3;4	3.9587E-07	32216	160511_QHF_FH_JSI12i_3	122.1	113.61			0.85016	0.84245	24.579	8	3	Median	1.1589	0.91555	NaN	1	1	Median	0.45741	0.53487	40	3	2	Plateau	0.88383	0.84486	15.254	2	0	Median	0.82207	0.83444	15.665	2	0	Median	679820000	394760000	285060000	30473000	13424000	17049000	180680000	109800000	70883000	169260000	101950000	67306000	299420000	169590000	129820000	29646	3805	28045	184013;184014;184015;184016;184017;184018;184019;184020	248683;248684;248685;248686;248687;248688;248689;248690;248691;248692;248693	248690			10	
LDVYTQWHQQSQSTKPK	2	Acetyl (K)	2115.0385	0.038517356	3805	Q8WX93	PALLD	Palladin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		58.511	48.789	3	0.0032067	26407	160513_QHF_FH_JSI11Kac_6	62.94	46.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4437900	4437900	0	0	0	0	0	0	0	4437900	4437900	0	0	0	0	29647	3805	28045	184021	248694	248694	2943		1	
LDWATAEALALGSLLAQGFNVR	0	Unmodified	2315.2274	0.22738076	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9	7		1							1		1	1		103.34	100.43	3	4.8237E-06	91843	160511_QHF_FH_JSI11i_2	83.063	74.354			1.3386	1.4572	48.382	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88391	1.035	NaN	1	1	Median	2.027	2.0517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89167000	40433000	48734000	0	0	0	69261000	35517000	33745000	19906000	4916500	14989000	0	0	0	29648	4117	28046	184022;184023	248695;248696	248695			2	
LDWELEQRK	1	Unmodified	1215.6248	0.62478638	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	42.614	42.071	3	0.00043536	37089	160511_QHF_FH_JSI11i_3	65.157	55.725			1.0256	1.263	24.68	5	0	Median	2.1099	1.8058	NaN	1	0	Median	1.0256	1.263	NaN	1	0	Median	1.1729	1.108	19.849	2	0	Median	1.0227	1.0219	NaN	1	0	Median	200280000	104170000	96111000	20487000	9303300	11184000	24828000	10945000	13883000	77009000	39321000	37688000	77958000	44601000	33357000	29649	2469	28047	184024;184025;184026;184027;184028	248697;248698	248697			2	
LDYDEDASAMLK	1	Unmodified	1369.6071	0.60714699	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							1	1	2	1	58.774	58.256	2	2.7945E-11	51608	160511_QHF_FH_JSI9i_1	152.54	113.97			0.98653	0.96753	4.8426	5	1	Median	1.1745	0.96753	NaN	1	0	Median	0.80506	0.95363	NaN	1	0	Median	1.0462	1.0012	8.3451	2	1	Median	0.94759	1.0077	NaN	1	0	Median	3925000000	1869900000	2055000000	780790000	377960000	402830000	864910000	472440000	392470000	1077200000	416730000	660430000	1202100000	602820000	599310000	29650	1707	28048	184029;184030;184031;184032;184033	248699;248700;248701;248702;248703;248704;248705;248706;248707;248708;248709;248710;248711;248712;248713;248714;248715	248712			17	
LDYFLLSHSLLPALCDSK	1	Unmodified	2091.0711	0.071063038	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.73	6.88		4	1						6	3	2	3	3	97.047	92.307	3	3.3495E-53	87235	160511_QHF_FH_JSI12i_2	173.37	140.68			1.0843	1.1118	22.018	11	0	Median	1.4123	1.228	21.949	3	0	Median	0.84551	1.0204	12.552	2	0	Median	1.0843	1.0409	14.835	3	0	Median	1.4228	1.4986	33.37	3	0	Median	2956200000	1399900000	1556300000	392850000	176230000	216610000	587940000	298790000	289150000	1136900000	577370000	559570000	838500000	347520000	490990000	29651	1294	28049	184034;184035;184036;184037;184038;184039;184040;184041;184042;184043;184044	248716;248717;248718;248719;248720;248721;248722	248717			7	
LDYGQHVVAGTPGR	0	Unmodified	1468.7423	0.74227576	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.17		8	7					5	3	5	4	6	8	36.152	32.415	2;3	6.8791E-40	27620	160511_QHF_FH_JSI12i_3	200.21	141.23			1.0387	1.0459	16.617	21	2	Median	1.2364	1.0691	11.842	5	0	Median	1.0644	1.2808	10.807	4	0	Median	1.0157	0.97919	13.827	6	1	Median	0.88865	0.94253	15.243	6	1	Median	3502300000	1648500000	1853800000	440800000	179390000	261410000	612650000	309210000	303440000	1348400000	671080000	677280000	1100500000	488810000	611700000	29652	1481	28050	184045;184046;184047;184048;184049;184050;184051;184052;184053;184054;184055;184056;184057;184058;184059;184060;184061;184062;184063;184064;184065;184066;184067	248723;248724;248725;248726;248727;248728;248729;248730;248731;248732;248733;248734;248735;248736;248737;248738;248739;248740;248741;248742;248743;248744;248745;248746;248747;248748;248749;248750;248751;248752;248753;248754;248755;248756;248757;248758;248759;248760	248756			36	
LDYHISVQNMMR	0	Unmodified	1505.7119	0.7119036	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	63.866	63.675	2;3	3.4502E-06	56482	160511_QHF_FH_JSI11i_3	96.64	91.562			1.0601	1.0691	21.348	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0247	0.96046	NaN	1	0	Median	1.2493	1.2448	21.523	2	0	Median	278150000	130050000	148090000	0	0	0	0	0	0	119250000	47792000	71455000	158900000	82261000	76638000	29653	1246	28051	184068;184069;184070;184071;184072	248761;248762;248763;248764;248765;248766;248767	248762			7	
LDYHKEQAAQLR	1	Acetyl (K)	1512.7685	0.76849051	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		46.027	35.65	3	0.0068477	20026	160513_QHF_FH_JSI11Kac_5	44.616	31.188			0.38375	0.37549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38375	0.37549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11453000	9028800	2424600	0	0	0	0	0	0	11453000	9028800	2424600	0	0	0	29654	1506	28052	184073	248768	248768	1529		1	
LDYILGLK	1	Unmodified	933.55352	0.55351892	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.01	4	4	4				2	4		4	5	5	4	73.575	69.567	2	0.00027047	62723	160511_QHF_FH_JSI10i_2	114.6	66.099			0.90071	0.95607	19.997	18	1	Median	1.2812	1.0717	8.0344	4	0	Median	0.76603	0.93583	10.285	5	0	Median	0.95519	0.93822	25.758	5	0	Median	1.0951	1.1366	24.223	4	1	Linear	7245000000	3694800000	3550200000	1260500000	579820000	680640000	1730800000	897050000	833740000	2658600000	1394300000	1264300000	1595200000	823640000	771520000	29655	1593	28053	184074;184075;184076;184077;184078;184079;184080;184081;184082;184083;184084;184085;184086;184087;184088;184089;184090;184091	248769;248770;248771;248772;248773;248774;248775;248776;248777;248778;248779;248780;248781;248782;248783;248784;248785;248786;248787;248788;248789;248790;248791;248792;248793;248794;248795;248796;248797;248798;248799;248800;248801;248802;248803;248804;248805;248806;248807;248808;248809;248810;248811	248807			43	
LDYITYLSIFDQLFDIPK	1	Unmodified	2203.1453	0.14527384	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	3	2			102.44	94.638	2;3	1.7399E-68	53990	160513_QHF_FH_JSI9Kac_6	248.64	195.64			0.88453	0.8313	9.6228	5	2	Median	0.88453	0.75221	5.0002	3	2	Plateau	0.76847	0.91515	8.1931	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	640390000	355970000	284420000	169410000	87159000	82251000	470980000	268810000	202170000	0	0	0	0	0	0	29656	2319	28054	184092;184093;184094;184095;184096	248812;248813;248814;248815;248816	248814			5	
LDYLDLYLIHWPTGFK	1	Unmodified	1993.0349	0.034935528	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	96.489	87.696	2;3	1.9871E-75	47598	160513_QHF_FH_JSI12Kac_6	229.75	197.31			0.97694	0.91766	18.983	7	1	Median	1.3316	1.1292	18.759	2	1	Median	0.73284	0.86412	NaN	1	0	Median	0.85479	0.80435	18.638	2	0	Median	0.88862	0.93456	15.345	2	0	Median	4645300000	2528400000	2116900000	1053900000	466990000	586920000	844230000	513530000	330700000	1224700000	644860000	579820000	1522500000	903050000	619450000	29657	1067	28055	184097;184098;184099;184100;184101;184102;184103	248817;248818;248819;248820;248821;248822;248823;248824;248825	248823			9	
LDYLDLYLIHWPTGFKPGK	2	Unmodified	2275.2041	0.20412612	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.43		3	7						17	7	7	7	6	96.025	90.722	2;3;4;5	2.8966E-70	45390	160513_QHF_FH_JSI12Kac_6	254.77	219.56			1.0378	1.0753	16.456	27	7	Median	1.22	1.0753	24.531	7	3	Median	0.98558	1.1691	8.293	7	2	Median	1.0758	0.99363	14.286	7	1	Median	0.96549	0.99296	15.025	6	1	Median	65636000000	26861000000	38775000000	19483000000	7849400000	11634000000	13158000000	5420600000	7737000000	16967000000	6983800000	9982700000	16029000000	6607200000	9421700000	29658	1067	28056	184104;184105;184106;184107;184108;184109;184110;184111;184112;184113;184114;184115;184116;184117;184118;184119;184120;184121;184122;184123;184124;184125;184126;184127;184128;184129;184130	248826;248827;248828;248829;248830;248831;248832;248833;248834;248835;248836;248837;248838;248839;248840;248841;248842;248843;248844;248845;248846;248847;248848;248849;248850;248851;248852;248853;248854;248855;248856;248857;248858;248859;248860;248861;248862;248863	248852			38	
LDYLGVSYGLTPR	0	Unmodified	1452.7613	0.76127986	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	77.745	76.959	2	0.00025304	66416	160511_QHF_FH_JSI12i_2	77.062	51.677			0.88296	0.87791	14.359	6	5	Median	1.0729	0.91886	19.623	2	2	Median	0.66484	0.79941	NaN	1	1	Median	0.9274	0.97635	19.44	2	2	Median	0.83527	0.90572	NaN	1	0	Median	187060000	95698000	91365000	41367000	20464000	20902000	25579000	14689000	10890000	75996000	38460000	37536000	44121000	22086000	22036000	29659	4623	28057	184131;184132;184133;184134;184135;184136	248864;248865;248866;248867;248868;248869	248864			6	
LDYLSSLK	1	Unmodified	937.51205	0.51204804	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	3	3	1	59.269	55.98	2	0.0046684	49135	160511_QHF_FH_JSI9i_2	67.993	19.71			0.84112	0.84208	23.211	8	0	Median	1.3187	1.1376	NaN	1	0	Median	0.7016	0.85001	22.618	3	0	Plateau	0.83791	0.83108	16.143	3	0	Plateau	1.0022	1.1312	NaN	1	0	Median	769060000	433310000	335750000	107390000	48960000	58426000	200120000	121560000	78561000	307230000	184940000	122280000	154320000	77841000	76482000	29660	895	28058	184137;184138;184139;184140;184141;184142;184143;184144	248870;248871;248872;248873;248874;248875;248876;248877;248878	248874			9	
LDYNNIPTVVFSHPPIGTVGLTEDEAIHK	1	Unmodified	3175.619	0.61897931	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	3	3	99.871	99.798	3;4	2.2516E-51	86395	160511_QHF_FH_JSI12i_3	196.15	190.12			0.86236	0.88646	11.936	11	5	Median	0.97072	0.82557	26.757	2	1	Median	0.76233	0.94409	9.372	3	3	Median	0.94161	0.86888	5.2471	3	0	Plateau	0.93044	0.93254	3.9862	3	1	Plateau	1875700000	916800000	958940000	92365000	37228000	55136000	140310000	59817000	80491000	516010000	257750000	258260000	1127000000	562000000	565050000	29661	765	28059	184145;184146;184147;184148;184149;184150;184151;184152;184153;184154;184155	248879;248880;248881;248882;248883;248884;248885;248886;248887;248888;248889;248890;248891;248892;248893;248894;248895;248896;248897;248898	248898			20	
LDYSDFQIVK	1	Unmodified	1226.6183	0.61830402	868	P07311	ACYP1	Acylphosphatase-1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				74.727	73.822	2	0.00084112	65615	160511_QHF_FH_JSI9i_1	82.749	49.372			1.5899	1.3171	NaN	1	1	Median	1.5899	1.3171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76406000	33224000	43182000	76406000	33224000	43182000	0	0	0	0	0	0	0	0	0	29662	868	28060	184156	248899	248899			1	
LEAAAQVR	0	Unmodified	856.47667	0.47666558	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0				By MS/MS	1	0	1												1	15.078	14.648	2	0.010011	12351	160511_QHF_FH_JSI12i_1	55.504	20.612			1.1416	1.1949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1416	1.1949	NaN	1	0	Median	234440000	107970000	126480000	0	0	0	0	0	0	0	0	0	234440000	107970000	126480000	29663	1862	28061	184157	248900	248900			1	
LEAADEGSGDVK	1	Unmodified	1189.5463	0.54626129	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	2	2	18.162	15.437	2	6.9598E-08	9636	160513_QHF_FH_JSI11Kac_3	108.67	90.848			1.1259	1.0941	12.611	6	0	Median	1.2582	1.0239	NaN	1	0	Median	0.92189	1.0996	NaN	1	0	Median	1.0285	1.0134	10.126	2	0	Median	1.2034	1.2872	4.8135	2	0	Median	1150400000	549910000	600510000	286960000	122040000	164920000	296310000	148280000	148030000	237150000	115610000	121540000	330000000	163980000	166020000	29664	2185	28062	184158;184159;184160;184161;184162;184163	248901;248902;248903;248904;248905;248906;248907;248908;248909	248905			9	
LEAADLVIFQFPLQWFGVPAILK	1	Unmodified	2614.4563	0.45631806	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.42	97.703	3	3.9954E-12	57833	160513_QHF_FH_JSI10Kac_6	102.48	95.449			0.90601	1.0642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90601	1.0642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103540000	53973000	49570000	0	0	0	103540000	53973000	49570000	0	0	0	0	0	0	29665	1080	28063	184164	248910	248910			1	
LEAAEDIAYQLSR	0	Unmodified	1477.7413	0.7412727	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	4	2	2	69.989	69.315	2;3	6.9429E-05	62898	160511_QHF_FH_JSI10i_1	114.24	79.707			0.80974	0.91525	70.393	9	3	Median	0.68772	0.60617	NaN	1	0	Median	0.46841	0.55607	76.594	4	1	Linear	2.1796	2.1837	83.368	2	1	Median	0.78489	0.84887	10.648	2	1	Median	888280000	432250000	456030000	102640000	48797000	53840000	386630000	190960000	195680000	171980000	79062000	92917000	227030000	113440000	113600000	29666	1424	28064	184165;184166;184167;184168;184169;184170;184171;184172;184173	248911;248912;248913;248914;248915;248916;248917;248918;248919;248920;248921;248922;248923;248924	248916			14	
LEAAIAEAEER	0	Unmodified	1200.5986	0.59863121	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	36.322	35.452	2	3.4288E-07	30354	160511_QHF_FH_JSI11i_2	119.16	79.11		+	0.93499	0.93931	47.37	8	5	Median	1.5518	1.3072	60.873	2	1	Median	1.2958	1.5474	63.926	2	1	Median	1.1982	1.1824	39.227	2	1	Median	0.67653	0.73807	18.377	2	2	Median	941460000	371490000	569970000	182000000	66592000	115410000	328780000	115660000	213110000	353850000	145700000	208160000	76828000	43539000	33289000	29667	53;71	28065	184174;184175;184176;184177;184178;184179;184180;184181;184182	248925;248926;248927;248928;248929;248930;248931;248932;248933;248934	248934			10	
LEAAIAEAEERGELALK	1	Unmodified	1811.9629	0.9628928	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							2	3	6	5	67.429	66.837	2;3	2.3718E-09	59355	160511_QHF_FH_JSI11i_3	169.17	130.39		+	0.66731	0.72153	60.666	14	13	Median	1.3268	1.1312	36.087	2	2	Median	0.56486	0.69347	25.538	3	2	Median	0.56976	0.55817	33.21	4	4	Median	0.76793	0.8235	90.542	5	5	Median	2895800000	1628000000	1267900000	321230000	176730000	144500000	571580000	351060000	220530000	946530000	554890000	391630000	1056500000	545280000	511220000	29668	53;71	28066	184183;184184;184185;184186;184187;184188;184189;184190;184191;184192;184193;184194;184195;184196;184197;184198	248935;248936;248937;248938;248939;248940;248941;248942;248943;248944;248945;248946;248947;248948;248949;248950;248951;248952	248935			18	
LEAALGEAK	1	Unmodified	900.49165	0.49164694	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	2	3	3	27.35	25.05	2	3.6513E-06	21681	160511_QHF_FH_JSI9i_1	122.13	60.173			1.1433	1.0662	34.217	11	1	Median	1.1786	0.95284	40.097	3	0	Median	0.8983	1.0696	1.0655	2	0	Median	1.1433	1.1036	31.429	3	0	Median	1.1539	1.2372	29.797	3	1	Median	6565600000	3475000000	3090600000	1583600000	835060000	748490000	1458900000	830400000	628490000	1572600000	608070000	964540000	1950600000	1201500000	749080000	29669	791	28067	184199;184200;184201;184202;184203;184204;184205;184206;184207;184208;184209	248953;248954;248955;248956;248957;248958;248959;248960;248961;248962;248963;248964;248965;248966;248967	248963			15	
LEAALGEAKK	2	Unmodified	1028.5866	0.58660996	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	2.47		15	10					1		6	5	8	7	19.322	18.397	2;3	1.6293E-05	15612	160511_QHF_FH_JSI9i_2	115.71	53.752			1.2678	1.2148	114.3	26	24	Median	1.0192	0.82331	75.451	6	5	Median	1.2819	1.4685	150.76	5	4	Median	1.3884	1.3146	137.43	8	8	Median	1.7713	1.7434	110.59	7	7	Median	9036200000	4396200000	4640000000	1368100000	585450000	782680000	1364900000	727800000	637090000	2610000000	1158000000	1452000000	3693100000	1924900000	1768200000	29670	791	28068	184210;184211;184212;184213;184214;184215;184216;184217;184218;184219;184220;184221;184222;184223;184224;184225;184226;184227;184228;184229;184230;184231;184232;184233;184234;184235	248968;248969;248970;248971;248972;248973;248974;248975;248976;248977;248978;248979;248980;248981;248982;248983;248984;248985;248986;248987;248988;248989;248990;248991;248992;248993;248994;248995;248996;248997	248979			30	
LEAASSALGGPTLTHAVTR	0	Unmodified	1850.985	0.98502522	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	52.119	51.398	3	7.3745E-26	45429	160511_QHF_FH_JSI11i_3	182.47	159.14			0.90895	1.0408	15.953	5	1	Median	1.322	1.1223	NaN	1	0	Median	0.84121	1.0408	NaN	1	0	Median	1.1267	1.0613	NaN	1	0	Median	0.81505	0.85265	18.622	2	1	Median	396320000	185320000	211000000	65241000	25938000	39303000	70157000	36765000	33392000	123020000	43914000	79104000	137900000	78701000	59203000	29671	5468	28069	184236;184237;184238;184239;184240	248998;248999;249000;249001	248998			2	
LEAATQQNQQLR	0	Unmodified	1398.7215	0.72154031	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		19.128	18.626	2	0.00022497	15843	160511_QHF_FH_JSI11i_1	78.932	56.939			0.75868	0.73894	41.762	3	2	Median	1.8129	1.4577	NaN	1	1	Median	0.60097	0.68145	NaN	1	1	Median	0.75868	0.73894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78062000	39543000	38519000	20038000	6672600	13365000	23511000	12211000	11300000	34513000	20659000	13854000	0	0	0	29672	2270	28070	184241;184242;184243	249002;249003;249004	249002			3	
LEAAYLDLQR	0	Unmodified	1190.6295	0.62953741	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.437	57.092	2	0.019553	48970	160511_QHF_FH_JSI12i_2	52.549	31.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29673	505	28071	184244	249005	249005			1	
LEADLEK	1	Unmodified	816.4229	0.42289868	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	23.171	22.545	2	0.037218	19432	160511_QHF_FH_JSI11i_1	48.756	5.8413			0.82065	0.87471	3.642	3	0	Plateau	0.97897	0.81347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86777	0.84804	NaN	1	0	Median	0.82065	0.87471	NaN	1	0	Median	804160000	441630000	362530000	202780000	119260000	83517000	0	0	0	256770000	118780000	137980000	344610000	203590000	141030000	29674	1609	28072	184245;184246;184247	249006;249007	249006			2	
LEADYDK	1	Unmodified	852.38651	0.38651317	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.261	14.816	2	0.056861	12438	160511_QHF_FH_JSI12i_1	46.426	24.295			2.1692	2.3322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1692	2.3322	NaN	1	1	Median	382990000	89995000	293000000	0	0	0	0	0	0	0	0	0	382990000	89995000	293000000	29675	3904	28073	184248	249008	249008			1	
LEAEGVPEVSEK	1	Unmodified	1285.6402	0.64016167	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	2	3	45.324	39.903	2	3.2489E-07	36011	160511_QHF_FH_JSI11i_1	127.42	112.27			1.0117	1.0424	8.9593	9	0	Median	1.1106	0.90763	NaN	1	0	Median	1.0117	1.1894	8.0475	3	0	Median	1.0284	1.0054	0.47117	2	0	Median	0.98351	1.0424	2.0026	3	0	Median	3286600000	1756800000	1529800000	604290000	305410000	298880000	933230000	551710000	381520000	918870000	477130000	441750000	830180000	422550000	407630000	29676	595	28074	184249;184250;184251;184252;184253;184254;184255;184256;184257	249009;249010;249011;249012;249013;249014;249015;249016;249017;249018;249019;249020;249021;249022;249023;249024;249025	249010			17	
LEAEIATYR	0	Unmodified	1064.5502	0.55022446	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.06	5	4	3				2	1		3	2	5	5	41.312	38.383	2	1.4006E-05	33820	160511_QHF_FH_JSI9i_2	109.71	77.78			0.91785	0.96451	19.029	13	2	Median	0.95155	0.77899	4.0477	2	1	Median	0.82207	0.98797	6.049	2	0	Median	0.91785	0.93072	15.278	5	0	Median	1.0122	1.0863	18.938	4	1	Median	5235600000	2561900000	2673800000	677630000	335020000	342610000	1438400000	751450000	686960000	1693700000	772400000	921340000	1425900000	703000000	722860000	29677	842	28075	184258;184259;184260;184261;184262;184263;184264;184265;184266;184267;184268;184269;184270;184271;184272	249026;249027;249028;249029;249030;249031;249032;249033;249034;249035;249036;249037;249038;249039;249040;249041;249042;249043;249044;249045	249039			20	
LEAEIATYRR	0	Unmodified	1220.6513	0.65133548	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	5.96		3	9					1	4	4	6	5	2	32.573	29.317	2;3	4.097E-10	24369	160511_QHF_FH_JSI10i_3	119.16	94.301			1.1495	1.0104	33.854	17	4	Median	1.2743	1.0427	6.9044	4	1	Median	0.78775	0.96538	50.541	6	1	Median	1.2507	1.1941	34.984	5	2	Median	1.0972	1.1442	17.597	2	0	Median	4080100000	1950800000	2129300000	1390400000	562590000	827860000	1937200000	1006600000	930560000	646030000	331580000	314450000	106420000	49997000	56421000	29678	842	28076	184273;184274;184275;184276;184277;184278;184279;184280;184281;184282;184283;184284;184285;184286;184287;184288;184289	249046;249047;249048;249049;249050;249051;249052;249053;249054;249055;249056;249057;249058;249059;249060;249061;249062;249063;249064;249065;249066;249067;249068	249050			23	
LEAELGNMQGLVEDFK	1	Unmodified	1791.8713	0.8713006	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.789	8	9	7							5	5	7	7	95.593	95.302	2;3	3.8083E-117	82274	160511_QHF_FH_JSI12i_2	309.04	271.7		+	0.94723	0.947	15.742	22	5	Median	1.0286	0.85758	13.837	5	0	Median	0.8055	0.96539	14.443	5	0	Median	0.92169	0.92501	13.813	6	3	Median	0.9491	1.0518	14.197	6	2	Median	8490700000	4290600000	4200100000	1198300000	651880000	546370000	2746900000	1347000000	1399900000	2118200000	1071500000	1046700000	2427400000	1220200000	1207200000	29679	51	28077	184290;184291;184292;184293;184294;184295;184296;184297;184298;184299;184300;184301;184302;184303;184304;184305;184306;184307;184308;184309;184310;184311;184312;184313	249069;249070;249071;249072;249073;249074;249075;249076;249077;249078;249079;249080;249081;249082;249083;249084;249085;249086;249087;249088;249089;249090;249091;249092;249093;249094;249095;249096;249097;249098;249099;249100;249101;249102;249103;249104;249105;249106;249107;249108;249109;249110;249111;249112;249113;249114;249115;249116;249117;249118;249119;249120;249121;249122;249123;249124;249125;249126;249127;249128;249129;249130;249131;249132;249133;249134;249135;249136;249137	249083			69	
LEAELGNMQGLVEDFK	1	Oxidation (M)	1807.8662	0.86621522	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	5	3	3	72.737	72.093	2	8.683E-05	65152	160511_QHF_FH_JSI10i_1	114.7	89.851		+	0.74991	0.68292	30.427	11	8	Median	0.93009	0.80694	23.6	2	2	Median	0.70586	0.8754	43.32	4	3	Median	0.59153	0.61708	6.8785	3	2	Plateau	0.83055	0.87368	11.756	2	1	Median	359750000	203270000	156480000	30250000	12442000	17809000	145210000	86006000	59209000	87379000	51968000	35411000	96908000	52853000	44055000	29680	51	28077	184314;184315;184316;184317;184318;184319;184320;184321;184322;184323;184324;184325;184326	249138;249139;249140;249141;249142;249143;249144;249145;249146;249147;249148;249149;249150	249142		18	13	
LEAERFENLR	0	Unmodified	1275.6571	0.65714914	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			38.984	37.493	2;3	0.001866	31275	160511_QHF_FH_JSI10i_3	80.688	40.337			0.66443	0.78688	13.456	3	0	Plateau	1.2394	1.0164	NaN	1	0	Median	0.73793	0.85446	12.701	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	256910000	131550000	125360000	17702000	7623900	10078000	239210000	123930000	115280000	0	0	0	0	0	0	29681	1667	28078	184327;184328;184329	249151;249152	249151			2	
LEAESMGFFTK	1	Unmodified	1258.5904	0.59037471	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		66.843	66.072	2	0.0016559	58685	160511_QHF_FH_JSI10i_2	75.387	55.601			0.80845	0.9902	45.612	3	3	Median	0.59413	0.49002	NaN	1	1	Median	0.80845	0.9902	NaN	1	1	Median	1.1065	1.1519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	198290000	96895000	101390000	34972000	19774000	15197000	86214000	42496000	43719000	77104000	34625000	42479000	0	0	0	29682	4418	28079	184330;184331;184332	249153;249154;249155	249155			3	
LEAGDYADLVK	1	Unmodified	1192.5976	0.59756858	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.333	58.922	2	0.00073206	53243	160511_QHF_FH_JSI10i_1	68.847	46.066			0.76637	0.82129	1.7724	2	1	Median	NaN	NaN	NaN	0	0	Median	0.70858	0.83165	NaN	1	0	Median	0.82887	0.81106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	152560000	68813000	83746000	0	0	0	68466000	34616000	33849000	84093000	34196000	49897000	0	0	0	29683	2485	28080	184333;184334;184335	249156;249157;249158	249157			3	
LEAGLNR	0	Unmodified	771.4239	0.42390173	2058	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	16.565	16.024	2	0.018612	12890	160511_QHF_FH_JSI12i_2	59.641	6.0866			0.98047	0.99007	19.19	5	0	Median	1.2868	1.0765	NaN	1	0	Median	1.13	1.3754	NaN	1	0	Median	0.98047	0.99007	NaN	1	0	Median	0.84549	0.86658	3.1931	2	0	Median	1085800000	565100000	520740000	221990000	99756000	122230000	194480000	103220000	91266000	302130000	145400000	156730000	367240000	216730000	150520000	29684	2058	28081	184336;184337;184338;184339;184340	249159	249159			1	
LEAHSDWVR	0	Unmodified	1111.5411	0.54105675	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.78		5	1						4	2	2	4	2	29.148	25.194	2;3	0.0029688	13946	160513_QHF_FH_JSI11Kac_6	47.853	42.947			0.93264	0.97116	15.742	10	1	Median	1.1797	1.0059	2.1219	2	0	Median	0.82286	0.99317	6.6331	2	1	Median	0.93264	0.95235	16.881	4	0	Median	0.99141	1.1048	24.36	2	0	Median	1051700000	532280000	519430000	213510000	82523000	130990000	91922000	52547000	39376000	591130000	313380000	277750000	155150000	83836000	71317000	29685	1860	28082	184341;184342;184343;184344;184345;184346;184347;184348;184349;184350	249160;249161;249162;249163;249164;249165;249166;249167;249168;249169;249170	249163			9	
LEAIEDDSVK	1	Unmodified	1117.5503	0.55028404	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.044	34.316	2	7.378E-05	28282	160511_QHF_FH_JSI10i_1	88.496	44.146			0.99123	1.028	60.138	5	1	Median	0.66907	0.55233	87.853	2	1	Median	0.99123	1.1732	NaN	1	0	Median	0.9046	0.87515	NaN	1	0	Median	1.2624	1.3283	NaN	1	0	Median	2660800000	1377200000	1283600000	645040000	323000000	322040000	767350000	428690000	338670000	641960000	330130000	311830000	606490000	295430000	311060000	29686	1824	28083	184351;184352;184353;184354;184355	249171;249172;249173;249174;249175;249176;249177;249178	249175			8	
LEALDANSR	0	Unmodified	987.49852	0.49852324	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.63	4	3				1	2			2	2	3	3	24.421	21.565	2	9.5573E-06	18829	160511_QHF_FH_JSI10i_1	111.74	56.208			0.96943	0.98421	18.128	10	0	Median	1.1742	0.98676	19.533	2	0	Median	0.75624	0.91213	35.382	2	0	Median	1.0511	1.0221	23.98	3	0	Median	0.96951	1.0295	6.4557	3	0	Plateau	3318600000	1560500000	1758100000	791320000	340200000	451120000	740540000	345190000	395350000	927870000	419120000	508750000	858880000	456030000	402840000	29687	930	28084	184356;184357;184358;184359;184360;184361;184362;184363;184364;184365	249179;249180;249181;249182;249183;249184;249185;249186;249187;249188;249189	249184			11	
LEALEEK	1	Unmodified	830.43855	0.43854874	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		21.094	20.895	2	0.01035	17983	160511_QHF_FH_JSI11i_1	75.213	14.241			1.4194	1.5363	16.532	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4502	1.7268	NaN	1	1	Median	1.3892	1.3668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	461470000	200090000	261390000	0	0	0	219920000	97301000	122620000	241560000	102780000	138770000	0	0	0	29688	1012	28085	184366;184367	249190;249191	249190			2	
LEALFPDLPK	1	Unmodified	1141.6383	0.63831118	3310	Q86TP1	PRUNE	Protein prune homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.223	80.408	2	0.00041204	69418	160511_QHF_FH_JSI12i_2	75.378	51.95			1.1693	1.148	13.61	3	1	Median	1.1693	1.0146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3224	1.3316	NaN	1	1	Median	1.0606	1.148	NaN	1	0	Median	55179000	23457000	31722000	14764000	6742900	8021000	0	0	0	24349000	9063200	15286000	16066000	7650700	8415100	29689	3310	28086	184368;184369;184370;184371	249192;249193;249194	249192			3	
LEALLEAAGIGK	1	Unmodified	1183.6812	0.68123863	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	75.457	74.736	2	1.3369E-05	66395	160511_QHF_FH_JSI10i_2	117.7	68.904			0.042464	0.046841	52.146	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.072828	0.085579	52.371	2	2	Median	0.041288	0.042518	NaN	1	1	Median	0.10207	0.11582	NaN	1	1	Median	262950000	256200000	6753000	67329000	67329000	0	68331000	66667000	1663600	76258000	75082000	1176200	51031000	47118000	3913100	29690	3434;489	28087	184372;184373;184374;184375;184376	249195;249196;249197;249198;249199	249199			5	
LEALSVK	1	Unmodified	758.4538	0.45380487	1565	P43487;Q9C010	RANBP1;PKIB	Ran-specific GTPase-activating protein;cAMP-dependent protein kinase inhibitor beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.09	6	4	2				3	3		3	4	5	6	34.412	30.651	2	0.013011	18704	160513_QHF_FH_JSI11Kac_4	77.058	35.556			0.93651	0.96157	41.956	18	1	Median	1.331	1.0781	23.306	3	1	Median	0.67663	0.80416	41.361	4	0	Median	0.92451	0.90646	63.261	5	0	Median	0.90431	0.96157	19.208	6	0	Median	5454700000	2717800000	2736800000	1095200000	511900000	583260000	1210900000	685370000	525540000	1694200000	762200000	931950000	1454400000	758380000	696060000	29691	1565	28088	184377;184378;184379;184380;184381;184382;184383;184384;184385;184386;184387;184388;184389;184390;184391;184392;184393;184394	249200;249201;249202;249203;249204;249205;249206;249207;249208;249209;249210;249211;249212;249213;249214	249207			15	
LEAMCFDGVK	1	Unmodified	1168.5257	0.52566596	1608	P47813	EIF1AX	Eukaryotic translation initiation factor 1A, X-chromosomal	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			54.295	53.896	2	0.0048531	48631	160511_QHF_FH_JSI10i_1	64.297	55.385			1.0111	1.1599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0111	1.1599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117100000	51915000	65181000	0	0	0	117100000	51915000	65181000	0	0	0	0	0	0	29692	1608	28089	184395	249215	249215			1	
LEANHGLLVAR	0	Unmodified	1191.6724	0.67240528	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	32.782	32.386	2;3	4.6054E-06	28041	160511_QHF_FH_JSI11i_3	103.34	83.038			1.0361	1.0524	14.233	4	1	Median	NaN	NaN	NaN	0	0	Median	0.80443	0.95574	NaN	1	0	Median	1.2139	1.1588	NaN	1	0	Median	1.0361	1.0548	20.546	2	1	Median	479820000	225200000	254620000	0	0	0	55573000	30640000	24933000	186750000	79716000	107040000	237490000	114850000	122650000	29693	3937	28090	184396;184397;184398;184399	249216;249217;249218;249219;249220;249221	249216			6	
LEAPFTQDDTLGLENSHPVWTQK	1	Unmodified	2625.2711	0.27109607	5714	Q9Y6A5	TACC3	Transforming acidic coiled-coil-containing protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.516	83.325	3	2.3172E-06	72323	160511_QHF_FH_JSI12i_3	66.383	55.226			1.298	1.3795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.298	1.3795	NaN	1	0	Median	48369000	26154000	22215000	0	0	0	0	0	0	0	0	0	48369000	26154000	22215000	29694	5714	28091	184400	249222;249223	249223			2	
LEAPLEELR	0	Unmodified	1068.5815	0.58152458	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	58.698	57.959	2	0.00039322	49753	160511_QHF_FH_JSI12i_2	81.548	37.101			0.60982	0.67753	15.372	7	3	Median	0.76979	0.67753	NaN	1	0	Median	0.57519	0.70609	11.442	2	2	Median	0.8402	0.83639	16.709	2	1	Median	0.56933	0.6112	0.69526	2	0	Median	1034900000	570080000	464770000	128580000	69460000	59117000	230960000	132620000	98343000	431590000	222350000	209240000	243720000	145650000	98070000	29695	2730	28092	184401;184402;184403;184404;184405;184406;184407	249224;249225;249226;249227;249228;249229;249230	249225			7	
LEAPPPTPGQLR	0	Unmodified	1274.6983	0.69828568	3120	Q6PI78	TMEM65	Transmembrane protein 65	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.973	41.499	2	0.024212	35673	160511_QHF_FH_JSI11i_2	42.743	23.963			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29696	3120	28093	184408	249231	249231			1	
LEAQAYTAYLSGMLR	0	Unmodified	1685.8447	0.84469192	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	2	1	92.345	89.12	2;3	8.7335E-11	43617	160513_QHF_FH_JSI11Kac_6	127.76	102.96			1.2198	1.3148	18.454	6	4	Median	1.6201	1.4058	3.1836	2	1	Median	1.2452	1.543	NaN	1	1	Median	1.0877	1.0623	21.668	2	1	Median	1.1504	1.2576	NaN	1	1	Median	179060000	82523000	96538000	58327000	19897000	38430000	23949000	10219000	13730000	78362000	41680000	36681000	18424000	10727000	7696600	29697	5295	28094	184409;184410;184411;184412;184413;184414	249232;249233;249234;249235;249236;249237	249233			6	
LEAQDSGEEAR	0	Unmodified	1203.5368	0.53675924	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.036	9.6554	2	0.00014924	7400	160511_QHF_FH_JSI10i_1	83.499	73.703			1.0165	0.97721	2.8845	4	0	Median	1.1628	0.96578	NaN	1	0	Median	0.77144	0.93375	NaN	1	0	Median	1.0724	0.99525	NaN	1	0	Median	0.9635	0.98876	NaN	1	0	Median	314950000	160780000	154170000	66991000	35791000	31200000	81134000	42773000	38361000	68645000	37368000	31276000	98181000	44852000	53329000	29698	3819	28095	184415;184416;184417;184418	249238;249239;249240;249241;249242;249243;249244;249245	249243			8	
LEAQLTENNIVK	1	Unmodified	1370.7405	0.74054442	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.728	5	1	1							2	3	1	1	49.989	49.066	2	7.454E-16	44113	160511_QHF_FH_JSI10i_1	174.4	126.8			0.76532	0.82831	24.393	7	4	Median	0.85803	0.68877	26.09	2	2	Median	0.57197	0.66788	30.571	3	2	Median	0.89458	0.87411	NaN	1	0	Median	0.83733	0.89886	NaN	1	0	Median	1578500000	846730000	731800000	484440000	231840000	252600000	348410000	212750000	135650000	343990000	171660000	172340000	401690000	230480000	171200000	29699	263	28096	184419;184420;184421;184422;184423;184424;184425	249246;249247;249248;249249;249250;249251;249252;249253;249254;249255;249256	249252			11	
LEAQLVDLK	1	Unmodified	1027.5914	0.59136099	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	56.189	55.652	2	0.0063386	50378	160511_QHF_FH_JSI11i_1	63.216	27.031			0.59856	0.59509	32.113	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7673	0.74679	NaN	1	1	Median	0.46692	0.4742	NaN	1	1	Median	61338000	31822000	29516000	0	0	0	0	0	0	34364000	16657000	17706000	26975000	15165000	11810000	29700	4870	28097	184426;184427	249257;249258	249257			2	
LEASAYAALGTAYRMIQK	1	Unmodified	1956.0139	0.01388251	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	87.822	87.156	3	0.045224	77335	160511_QHF_FH_JSI10i_2	34.498	11.017			0.76109	0.82945	5.6389	3	0	Median	0.90915	0.77522	NaN	1	0	Median	0.71466	0.86707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76109	0.82945	NaN	1	0	Median	83091000	49552000	33539000	39166000	22959000	16207000	25222000	16178000	9043900	0	0	0	18703000	10415000	8288600	29701	3974	28098	184428;184429;184430	249259	249259			1	
LEASIER	0	Unmodified	816.43413	0.43413207	5238	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			2	1	2	1	21.154	19.35	2	0.039053	16671	160511_QHF_FH_JSI10i_1	47.849	7.7455			1.1775	1.1291	24.784	6	1	Median	1.0993	0.90536	8.407	2	0	Median	0.97942	1.1234	NaN	1	0	Median	1.3215	1.2962	18.792	2	0	Median	1.5238	1.6317	NaN	1	1	Median	1342000000	669170000	672880000	451720000	197070000	254650000	320820000	183650000	137170000	304460000	159030000	145430000	265050000	129420000	135630000	29702	5238	28099	184431;184432;184433;184434;184435;184436	249260;249261;249262	249261			3	
LEASNWLTHIK	1	Unmodified	1310.6983	0.69828568	4211	Q96QG7	MTMR9	Myotubularin-related protein 9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.604	60.329	3	0.00019117	52001	160511_QHF_FH_JSI12i_3	78.903	68.577			0.61018	0.62377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61018	0.62377	NaN	1	1	Median	110910000	68293000	42615000	0	0	0	0	0	0	0	0	0	110910000	68293000	42615000	29703	4211	28100	184437	249263	249263			1	
LEATINELV	0	Unmodified	1000.5441	0.54407645	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.35	8	3	4	3	4	3	2			4	8	7	8	78.911	74.883	1;2	3.8861E-06	69738	160511_QHF_FH_JSI11i_1	121.29	112.96			0.95072	0.99319	11.648	26	3	Median	1.3654	1.0454	4.5641	4	1	Linear	0.83717	0.99319	11.08	8	1	Median	0.91777	0.90404	7.2594	6	1	Median	0.98851	1.0318	12.54	8	0	Median	9079900000	4502300000	4577500000	1581500000	704660000	876890000	3242100000	1682500000	1559600000	2018400000	1015200000	1003100000	2237900000	1100000000	1137900000	29704	973	28101	184438;184439;184440;184441;184442;184443;184444;184445;184446;184447;184448;184449;184450;184451;184452;184453;184454;184455;184456;184457;184458;184459;184460;184461;184462;184463;184464	249264;249265;249266;249267;249268;249269;249270;249271;249272;249273;249274;249275;249276;249277;249278;249279;249280;249281;249282;249283;249284;249285;249286;249287;249288;249289;249290;249291;249292;249293;249294;249295;249296;249297	249266			33	
LEATLQEEAAIQQEHR	0	Unmodified	1864.9279	0.92790427	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0.577	1	4	1							1	1	2	2	43.781	43.031	3	2.4749E-06	37579	160511_QHF_FH_JSI9i_2	120.9	104.76			1.0432	0.98607	19.52	6	1	Median	1.1803	1.0134	NaN	1	0	Median	0.68447	0.83049	NaN	1	0	Median	0.87657	0.85903	15.635	2	0	Median	1.1256	1.2109	11.593	2	1	Median	390150000	205510000	184630000	59408000	25940000	33468000	75775000	43366000	32409000	138390000	80785000	57602000	116580000	55422000	61156000	29705	655	28102	184465;184466;184467;184468;184469;184470	249298;249299;249300;249301	249300			3	
LEAVSHTSDMHR	0	Unmodified	1381.6408	0.64084715	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.16	2	11	7						4	4	6	9	5	13.334	11.726	2;3;4	4.6193E-53	9047	160511_QHF_FH_JSI12i_3	215.06	198.81			0.94395	0.90529	32.71	23	1	Median	1.0397	0.86964	14.423	4	0	Median	0.6332	0.77512	32.509	6	1	Median	0.90092	0.86101	41.849	8	0	Median	1.1767	1.189	13.117	5	0	Median	5570900000	2765900000	2804900000	306250000	137730000	168520000	513040000	293730000	219310000	1781600000	926600000	854960000	2970000000	1407900000	1562200000	29706	2169	28103	184471;184472;184473;184474;184475;184476;184477;184478;184479;184480;184481;184482;184483;184484;184485;184486;184487;184488;184489;184490;184491;184492;184493;184494	249302;249303;249304;249305;249306;249307;249308;249309;249310;249311;249312;249313;249314;249315;249316;249317;249318;249319;249320;249321;249322;249323;249324;249325;249326	249322			25	
LEAVSHTSDMHR	0	Oxidation (M)	1397.6358	0.63576177	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	8.0917	8.1406	2;3	9.6149E-06	9380	160511_QHF_FH_JSI11i_3	121.9	81.897			0.96014	0.93811	36.374	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69084	0.63883	36.675	2	0	Median	1.0548	1.0662	0.43941	2	0	Median	230460000	121610000	108850000	0	0	0	0	0	0	92806000	50679000	42127000	137650000	70927000	66724000	29707	2169	28103	184495;184496;184497;184498	249327;249328;249329;249330;249331;249332;249333	249327		1819	6	
LEAYQHLFYLLQTNPTYLAK	1	Unmodified	2425.2682	0.26818294	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		4							12	4	4	4	4	95.446	89.348	2;3	0	46558	160513_QHF_FH_JSI11Kac_6	405.79	363.01			1.0379	1.0317	27.183	15	7	Median	1.0369	0.87622	29.713	4	1	Median	0.72736	0.85967	9.9168	4	3	Median	1.2082	1.2473	5.6696	3	1	Plateau	1.2304	1.3256	19.86	4	2	Median	43060000000	20901000000	22159000000	4494800000	2159700000	2335100000	13151000000	8049900000	5101300000	5297900000	2558400000	2739400000	20116000000	8133200000	11983000000	29708	1600	28104	184499;184500;184501;184502;184503;184504;184505;184506;184507;184508;184509;184510;184511;184512;184513;184514	249334;249335;249336;249337;249338;249339;249340;249341;249342;249343;249344;249345;249346;249347;249348;249349;249350;249351;249352;249353;249354;249355;249356;249357	249336			24	
LEAYQHLFYLLQTQPIYLAK	1	Unmodified	2451.3202	0.32021851	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	94.74	86.366	3	7.5148E-19	50772	160513_QHF_FH_JSI10Kac_6	139.02	125.98			1.1294	1.1195	27.332	4	0	Median	1.4895	1.2721	NaN	1	0	Median	0.85643	0.98513	NaN	1	0	Median	1.4946	1.4617	NaN	1	0	Median	0.7318	0.78946	NaN	1	0	Median	441200000	193750000	247460000	155200000	43867000	111330000	188350000	102870000	85479000	39954000	15543000	24411000	57702000	31464000	26238000	29709	3340	28105	184515;184516;184517;184518	249358;249359;249360	249360			3	
LECEKQQIQNDLNQWKTQYSRKEEAIR	3	3 Acetyl (K)	3560.7318	0.73179401	1085	P15924	DSP	Desmoplakin	yes	yes	3	0	0	4				By MS/MS	16	0									1				1	98.251	88.809	4	0.0070459	48729	160513_QHF_FH_JSI12Kac_6	40.428	23.98			1.7333	1.8375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7333	1.8375	NaN	1	0	Median	397710000	160310000	237400000	0	0	0	0	0	0	0	0	0	397710000	160310000	237400000	29710	1085	28106	184519	249361	249361	937;938;939		1	
LEDAADVYR	0	Unmodified	1050.4982	0.49818889	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	31.007	28.419	2	0.013585	25223	160511_QHF_FH_JSI10i_1	46.334	23.842			1.0813	1.1044	14.105	4	0	Median	1.4031	1.1627	NaN	1	0	Median	0.73271	0.85141	NaN	1	0	Median	1.1382	1.0921	NaN	1	0	Median	1.0272	1.1168	NaN	1	0	Median	813960000	449790000	364180000	193730000	84484000	109250000	308080000	179250000	128840000	308930000	184710000	124220000	3216600	1352400	1864200	29711	4518	28107	184520;184521;184522;184523	249362;249363;249364	249363			3	
LEDAESSNPNLQSLLSTDALPSASK	1	Unmodified	2586.2661	0.26607027	5504	Q9Y294	ASF1A	Histone chaperone ASF1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	88.376	87.958	3	5.2234E-08	80041	160511_QHF_FH_JSI12i_1	69.981	62.084			0.99659	0.99781	23.118	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90144	0.84733	NaN	1	1	Median	1.1018	1.175	NaN	1	1	Median	86872000	38822000	48050000	0	0	0	0	0	0	49480000	22815000	26666000	37392000	16007000	21385000	29712	5504	28108	184524;184525	249365;249366	249366			2	
LEDAGVR	0	Unmodified	758.39227	0.39226725	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.466	10.083	2	0.029706	7992	160511_QHF_FH_JSI12i_1	54.525	20.787			0.92007	0.92966	11.536	4	1	Median	1.235	1.0053	NaN	1	0	Median	0.71838	0.8597	NaN	1	0	Median	1.09	1.0419	NaN	1	0	Median	0.77664	0.82352	NaN	1	1	Median	1197500000	591290000	606210000	284170000	122410000	161760000	294520000	153550000	140960000	327630000	160310000	167320000	291180000	155010000	136170000	29713	1029	28109	184526;184527;184528;184529	249367;249368;249369	249368			3	
LEDELGGQFLDLSLHDTVTTLILGGHNK	1	Unmodified	3034.5611	0.56113008	4667	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.3	100.22	4	0.060422	88013	160511_QHF_FH_JSI9i_2	10.611	1.6433			1.4515	1.2216	NaN	1	1	Median	1.4515	1.2216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22466000	6785300	15680000	22466000	6785300	15680000	0	0	0	0	0	0	0	0	0	29714	4667	28110	184530	249370	249370			1	
LEDELNR	0	Unmodified	887.43486	0.43486035	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.782	17.297	2	0.0055575	14451	160511_QHF_FH_JSI9i_1	94.407	33.619			1.0429	1.0598	8.4731	4	0	Median	1.1213	0.93277	NaN	1	0	Median	0.96272	1.1332	NaN	1	0	Median	1.0615	1.0296	NaN	1	0	Median	1.0247	1.0909	NaN	1	0	Median	1457300000	790360000	666980000	357630000	175900000	181730000	397990000	242690000	155310000	365220000	195640000	169570000	336500000	176130000	160370000	29715	1085	28111	184531;184532;184533;184534	249371;249372;249373;249374;249375	249375			5	
LEDFFAR	0	Unmodified	896.43922	0.43921744	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	52.811	51.942	2	0.0049909	45634	160511_QHF_FH_JSI9i_2	96.51	63.539			0.99543	1.0194	7.7625	8	0	Median	1.2523	1.0194	2.1547	2	0	Median	0.88904	1.0688	17.89	2	0	Median	1.041	1.0499	6.5017	2	0	Median	0.96145	1.0362	5.5375	2	0	Median	3722800000	1817800000	1905000000	784080000	347360000	436730000	802560000	414640000	387930000	1344400000	599170000	745250000	791730000	456670000	335060000	29716	1000	28112	184535;184536;184537;184538;184539;184540;184541;184542	249376;249377;249378;249379;249380;249381;249382;249383;249384;249385	249381			10	
LEDFRVDPPMGEEGNHK	1	Unmodified	1968.9	0.89997496	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	46.684	46.443	3	0.019186	39685	160511_QHF_FH_JSI12i_3	37.042	26.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29717	3132	28113	184543	249386	249386			1	
LEDGDIEEAPGAGGR	0	Unmodified	1484.6743	0.67431535	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		32.582	32.343	2	0.0056125	29058	160511_QHF_FH_JSI11i_1	52.928	37.038			2.2615	2.1969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2615	2.1969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15280000	5942100	9337800	0	0	0	0	0	0	15280000	5942100	9337800	0	0	0	29718	5696	28114	184544;184545	249387;249388	249388			2	
LEDGQTADGQTEEAAEPGEQLQTQK	1	Unmodified	2672.2049	0.20492658	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	39.336	38.776	3	3.2175E-13	35125	160511_QHF_FH_JSI12i_1	102.16	97.402			0.93176	0.94432	44.532	5	3	Median	0.93176	0.75909	NaN	1	1	Median	1.432	1.6571	NaN	1	0	Median	0.97576	0.93713	67.143	2	2	Median	0.87597	0.94432	NaN	1	0	Median	150660000	77344000	73314000	10227000	2582700	7644200	38514000	23953000	14561000	65161000	31131000	34029000	36756000	19676000	17080000	29719	4083	28115	184546;184547;184548;184549;184550;184551	249389;249390;249391;249392;249393;249394;249395;249396	249391			8	
LEDIANAALAASAVTQVAK	1	Unmodified	1855.0051	0.005091963	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	1	2	88.173	87.816	2;3	8.1644E-11	79976	160511_QHF_FH_JSI11i_1	105.46	82.224			0.66912	0.67112	18.897	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.69015	0.78558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80934	0.81004	26.607	2	0	Median	63426000	38422000	25005000	0	0	0	26096000	14626000	11470000	0	0	0	37330000	23796000	13534000	29720	3785	28116	184552;184553;184554;184555;184556;184557	249397;249398;249399;249400;249401;249402	249397			6	
LEDIFQQEFSTPSRK	1	Unmodified	1823.9054	0.90537792	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	64.534	64.016	3	1.2438E-05	53582	160511_QHF_FH_JSI10i_3	80.387	65.692			1.0597	0.99395	15.289	5	0	Median	1.0597	0.89897	NaN	1	0	Median	0.68904	0.83976	NaN	1	0	Median	1.1589	1.1121	15.882	2	0	Median	1.0653	1.0642	NaN	1	0	Median	334600000	162490000	172110000	51328000	21380000	29949000	54799000	33480000	21319000	174300000	77523000	96781000	54168000	30109000	24059000	29721	4724	28117	184558;184559;184560;184561;184562;184563	249403;249404;249405;249406;249407;249408;249409;249410;249411;249412	249406			8	
LEDILESINSIK	1	Unmodified	1372.745	0.7449611	5570	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	87.294	86.734	2	2.0656E-06	76259	160511_QHF_FH_JSI11i_2	124.67	86.941			0.80417	0.85596	27.024	7	1	Median	0.77987	0.66312	7.7815	2	0	Median	0.91817	1.0952	14.154	2	1	Median	1.0056	1.0092	34.626	2	0	Median	0.79638	0.85596	NaN	1	0	Median	276470000	139200000	137270000	60013000	32595000	27418000	71274000	36150000	35125000	100150000	46209000	53943000	45029000	24242000	20787000	29722	5570	28118	184564;184565;184566;184567;184568;184569;184570	249413;249414;249415;249416;249417;249418;249419;249420;249421	249420			7	
LEDLIVK	1	Unmodified	828.49567	0.49566969	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	46.479	43.834	2	0.0089406	38984	160511_QHF_FH_JSI9i_1	81.297	28.614			1.0423	0.97579	8.3954	5	0	Median	1.0999	0.9154	NaN	1	0	Median	0.80768	0.97579	NaN	1	0	Median	1.0423	1.0158	NaN	1	0	Median	0.99372	1.054	11.835	2	0	Median	2195100000	1033500000	1161500000	328860000	156820000	172040000	630190000	330750000	299440000	752500000	323350000	429150000	483510000	222590000	260920000	29723	1249	28119	184571;184572;184573;184574;184575	249422;249423;249424;249425;249426;249427;249428;249429	249428			8	
LEDLLQDAQDEK	1	Unmodified	1415.678	0.67800374	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	54.178	53.56	2	3.68E-06	48235	160511_QHF_FH_JSI10i_1	119.74	89.489			1.0135	0.97668	55.788	6	4	Median	1.0084	0.83432	NaN	1	0	Median	0.80097	0.94706	35.484	2	2	Median	1.1875	1.1433	NaN	1	0	Median	1.4351	1.4952	105.83	2	2	Median	859950000	393540000	466410000	167580000	78946000	88634000	270860000	135520000	135350000	148200000	71968000	76234000	273300000	107110000	166200000	29724	2636	28120	184576;184577;184578;184579;184580;184581	249430;249431;249432;249433;249434;249435	249433			6	
LEDLLQDSMDEK	1	Unmodified	1434.6548	0.65482546	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	61.213	60.671	2	0.00031196	55208	160511_QHF_FH_JSI12i_1	90.685	69.313			1.525	1.4916	5.1086	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5094	1.4387	NaN	1	1	Median	1.5406	1.5465	NaN	1	1	Median	66740000	21716000	45024000	0	0	0	0	0	0	39127000	12804000	26322000	27613000	8911900	18701000	29725	5458	28121	184582;184583	249436;249437	249437			2	
LEDLLRK	1	Unmodified	885.52837	0.5283668	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.83		8	4					1	3	4	3	5	4	31.957	28.828	3	0.0013077	23875	160511_QHF_FH_JSI12i_3	94.262	35.057			2.5838	2.1621	77.031	15	15	Median	2.8014	2.3037	64.826	4	4	Median	2.0704	2.5245	51.683	2	2	Median	2.7278	2.7352	102.26	5	5	Median	1.1703	1.2394	79.078	4	4	Median	4318300000	2105000000	2213300000	741630000	318670000	422960000	581990000	328580000	253410000	1578600000	816950000	761620000	1416100000	640780000	775350000	29726	1023	28122	184584;184585;184586;184587;184588;184589;184590;184591;184592;184593;184594;184595;184596;184597;184598;184599	249438;249439;249440;249441;249442;249443;249444;249445;249446;249447;249448;249449;249450;249451;249452;249453	249452			16	
LEDLSESIVNDFAYMK	1	Unmodified	1872.8815	0.88153093	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	101.06	100.98	2;3	2.6154E-46	91676	160511_QHF_FH_JSI11i_1	257.52	213.22			1.3248	1.2246	43.832	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.60308	0.68684	NaN	1	0	Median	0.9514	0.92184	NaN	1	1	Median	1.5458	1.6268	NaN	1	1	Median	214050000	95583000	118470000	0	0	0	21874000	12510000	9363300	98210000	52789000	45421000	93965000	30284000	63681000	29727	1678	28123	184600;184601;184602	249454;249455;249456	249454			3	
LEDPDGK	1	Unmodified	772.3603	0.36029842	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.4	4.8	4					1				1	1	2	1	9.3981	7.643	2	0.020186	6131	160511_QHF_FH_JSI9i_1	57.177	42.765			0.89035	0.8806	15.095	5	1	Median	1.2533	1.0228	NaN	1	0	Median	0.71009	0.83685	NaN	1	1	Median	0.98066	0.96726	13.275	2	0	Median	0.68771	0.73415	NaN	1	0	Median	1627000000	899060000	727940000	308830000	158300000	150530000	532620000	299220000	233410000	434220000	237920000	196300000	351330000	203630000	147700000	29728	5573	28124	184603;184604;184605;184606;184607	249457;249458;249459	249459			3	
LEDQNEYESR	0	Unmodified	1281.5473	0.54732392	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	13.778	13.537	2	0.00084814	11193	160511_QHF_FH_JSI10i_1	82.645	70.598			0.71353	0.84969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71353	0.84969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36988000	21893000	15096000	0	0	0	36988000	21893000	15096000	0	0	0	0	0	0	29729	4248	28125	184608;184609	249460;249461	249461			2	
LEDRETVIK	1	Unmodified	1101.603	0.60298831	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.745	17.784	2	0.025211	14331	160511_QHF_FH_JSI12i_3	59.245	17.136			0.87108	0.90131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87108	0.90131	NaN	1	0	Median	40876000	19014000	21863000	0	0	0	0	0	0	0	0	0	40876000	19014000	21863000	29730	2516	28126	184610	249462	249462			1	
LEDSLWVSLTDQHVQLPMAMTAENLAVK	1	Unmodified	3138.573	0.57295709	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.63	101.51	3	3.5685E-06	89261	160511_QHF_FH_JSI11i_2	54.419	48.259			0.92542	0.95012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92542	0.95012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	226290000	121860000	104430000	0	0	0	0	0	0	226290000	121860000	104430000	0	0	0	29731	1545	28127	184611	249463	249463			1	
LEDSSNQVTQAVAK	1	Unmodified	1488.742	0.74200098	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.711	31.139	2	0.015076	28022	160511_QHF_FH_JSI12i_1	53.448	42.228			2.0532	2.0607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0532	2.0607	NaN	1	1	Median	27550000	9045600	18504000	0	0	0	0	0	0	0	0	0	27550000	9045600	18504000	29732	1599	28128	184612	249464	249464			1	
LEDSTRETQSQLETER	0	Unmodified	1920.9025	0.90247738	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			23.629	22.986	3	0.020885	20172	160511_QHF_FH_JSI10i_1	33.624	23.157			1.1606	1.1371	2.071	2	1	Median	1.3311	1.1206	NaN	1	0	Median	1.0119	1.1539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57446000	23516000	33930000	22435000	8138200	14297000	35012000	15378000	19634000	0	0	0	0	0	0	29733	1085	28129	184613;184614	249465;249466	249465			2	
LEDTDQTR	0	Unmodified	976.44615	0.44615331	2896	Q5JPH6	EARS2	Probable glutamate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.5533	6.2073	2	0.054734	4201	160511_QHF_FH_JSI12i_1	45.081	26.351			0.80412	0.82158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80412	0.82158	NaN	1	1	Median	69855000	43065000	26790000	0	0	0	0	0	0	0	0	0	69855000	43065000	26790000	29734	2896	28130	184615	249467	249467			1	
LEDTENWLYEDGEDQPK	1	Unmodified	2079.8909	0.89090965	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									5	3	2	2	62.787	62.066	2;3	1.0669E-296	56504	160511_QHF_FH_JSI12i_1	370.42	364.92			1.0289	1.0474	10.595	10	1	Median	1.2996	1.0703	17.238	4	1	Median	0.82067	0.9773	1.4692	2	0	Median	1.0807	1.045	3.6681	2	0	Median	1.0074	1.0733	2.3665	2	0	Median	2324200000	1107500000	1216700000	434640000	193010000	241640000	658780000	306520000	352260000	574750000	271190000	303560000	656050000	336780000	319270000	29735	1417	28131	184616;184617;184618;184619;184620;184621;184622;184623;184624;184625;184626;184627	249468;249469;249470;249471;249472;249473;249474;249475;249476;249477;249478;249479;249480;249481;249482;249483;249484;249485;249486;249487;249488;249489;249490;249491;249492;249493;249494;249495	249478			28	
LEDTIRR	0	Unmodified	901.49813	0.49812931	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			10.902	10.358	3	0.018015	8310	160511_QHF_FH_JSI10i_2	35.88	9.278			0.3544	0.37118	128.7	2	0	Median	0.17142	0.1494	NaN	1	0	Median	0.73271	0.92216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	373550000	299280000	74274000	277220000	239240000	37982000	96335000	60044000	36292000	0	0	0	0	0	0	29736	1240	28132	184628;184629	249496;249497	249497			2	
LEDVLPLAFTR	0	Unmodified	1272.7078	0.70778773	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	3	1	88.245	87.822	2	2.6534E-05	78069	160511_QHF_FH_JSI10i_2	99.653	70.566			0.96113	0.96898	64.594	7	1	Median	0.98653	0.85548	NaN	1	0	Median	0.84598	1.0064	11.479	2	0	Median	0.99601	1.006	100.3	3	1	Median	0.87095	0.96898	NaN	1	0	Median	569130000	313980000	255150000	97689000	48128000	49561000	133540000	75588000	57951000	238640000	137620000	101020000	99266000	52642000	46623000	29737	2927	28133	184630;184631;184632;184633;184634;184635;184636	249498;249499;249500;249501;249502;249503;249504;249505;249506;249507;249508	249508			11	
LEEAEKAADESER	1	Acetyl (K)	1517.6845	0.68454569	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		32.495	23.866	2	6.2156E-05	14316	160513_QHF_FH_JSI11Kac_3	93.258	57.747		+	0.47257	0.50598	69.193	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7009	0.82531	NaN	1	0	Median	0.31863	0.3102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11430000	8166300	3263700	0	0	0	2031000	1042800	988180	9399100	7123500	2275500	0	0	0	29738	858;73;886;929;2069	28134	184637;184638	249509;249510	249510	51		2	
LEEANGNTQMVEK	1	Unmodified	1461.677	0.67695789	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.679	23.133	2	0.00055435	19934	160511_QHF_FH_JSI9i_1	88.338	50.993			1.1169	0.98862	28.569	4	3	Median	1.0555	0.86134	NaN	1	1	Median	1.2614	1.5022	NaN	1	0	Median	1.1818	1.1347	NaN	1	1	Median	0.78496	0.80352	NaN	1	1	Median	246320000	112090000	134230000	52466000	21522000	30944000	75319000	31507000	43812000	48476000	22096000	26380000	70059000	36965000	33094000	29739	623	28135	184639;184640;184641;184642	249511;249512;249513;249514	249514			4	
LEEDDGDVAMSDAQDGPR	0	Unmodified	1918.7851	0.78506437	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	38.65	38.227	2	4.3295E-08	34432	160511_QHF_FH_JSI11i_1	122.45	109.47			0.91199	0.90446	11.876	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0071	0.98369	NaN	1	1	Median	0.82588	0.8316	NaN	1	0	Median	52498000	24787000	27711000	0	0	0	8632300	8632300	0	26327000	7744800	18582000	17539000	8410300	9128400	29740	5257	28136	184643;184644;184645;184646	249515;249516;249517;249518	249515			4	
LEEDDQAK	1	Unmodified	946.42436	0.42435524	710	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		5.3833	5.0517	2	0.056342	2972	160511_QHF_FH_JSI9i_2	35.88	9.278			0.9218	0.93243	2.1203	3	0	Plateau	1.1342	0.97252	NaN	1	0	Median	0.78878	0.94801	NaN	1	0	Median	0.9218	0.93243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	290720000	154290000	136440000	86773000	35617000	51156000	92219000	57130000	35089000	111730000	61541000	50190000	0	0	0	29741	710	28137	184647;184648;184649	249519	249519			1	
LEEDINSSMTNSTAASRPPVTLR	0	Unmodified	2488.2228	0.22276567	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	2	6	4							3	3	3	3	57.592	56.755	2;3	3.2314E-24	50249	160511_QHF_FH_JSI10i_2	145.9	122.17			1.0646	1.1083	5.8587	12	3	Median	1.3225	1.1288	3.8937	3	1	Plateau	0.94128	1.1718	3.6643	3	0	Median	1.0753	1.0892	5.9155	3	1	Plateau	0.96384	1.0825	5.49	3	1	Plateau	6708100000	3177500000	3530600000	1764500000	743870000	1020600000	2172900000	1085300000	1087700000	2063300000	998240000	1065000000	707420000	350090000	357330000	29742	2656	28138	184650;184651;184652;184653;184654;184655;184656;184657;184658;184659;184660;184661	249520;249521;249522;249523;249524;249525;249526;249527;249528;249529;249530;249531;249532;249533;249534;249535;249536;249537;249538;249539;249540	249537			21	
LEEDINSSMTNSTAASRPPVTLR	0	Oxidation (M)	2504.2177	0.21768029	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.74	3	5	3					2		1	5	5	2	49.891	47.107	3	8.1901E-07	41461	160511_QHF_FH_JSI10i_2	70.917	56.304			0.9623	1.0028	24.586	10	3	Median	1.2601	1.0712	NaN	1	0	Median	0.93347	1.1582	18.696	3	1	Plateau	0.9496	0.88348	32.488	4	2	Median	0.89526	0.99481	12.407	2	0	Median	654000000	328810000	325190000	141790000	62331000	79457000	271790000	132870000	138920000	209190000	115230000	93962000	31230000	18380000	12850000	29743	2656	28138	184662;184663;184664;184665;184666;184667;184668;184669;184670;184671;184672;184673;184674	249541;249542;249543;249544;249545;249546;249547;249548;249549;249550;249551;249552;249553;249554	249553		2076	14	
LEEDISSSMTNSTAASRPPVTLR	0	Oxidation (M)	2477.2068	0.20678125	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.833	2	2	3							1	3	2	1	49.043	48.378	3	1.0684E-05	43574	160511_QHF_FH_JSI10i_1	65.784	45.338			0.94334	1.0818	10.003	7	0	Median	1.2133	1.066	NaN	1	0	Median	0.86768	1.0818	11.859	3	0	Median	1.0391	0.998	13.586	2	0	Median	1.1026	1.1339	NaN	1	0	Median	523730000	277290000	246440000	103340000	56482000	46853000	236540000	131060000	105480000	142680000	64770000	77914000	41178000	24986000	16192000	29744	2657	28139	184675;184676;184677;184678;184679;184680;184681	249555;249556;249557;249558;249559;249560;249561;249562;249563;249564	249559		2080	10	
LEEDISSSMTNSTAASRPPVTLR	0	Unmodified	2461.2119	0.21186663	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.42	4	4	5					1		4	3	4	3	61.016	59.449	3	7.7414E-24	51788	160511_QHF_FH_JSI11i_2	157.97	125.43			1.0492	1.0599	9.272	14	2	Median	1.3994	1.1492	8.6082	4	2	Linear	0.92365	1.0635	3.5362	3	0	Median	1.0625	1.0382	4.1818	4	0	Median	0.77445	1.0878	18.114	3	0	Plateau	5216500000	2481300000	2735200000	1451000000	633830000	817210000	1829800000	916980000	912820000	1405000000	665660000	739370000	530660000	264830000	265830000	29745	2657	28139	184682;184683;184684;184685;184686;184687;184688;184689;184690;184691;184692;184693;184694;184695	249565;249566;249567;249568;249569;249570;249571;249572;249573;249574;249575;249576;249577;249578;249579;249580;249581;249582;249583;249584;249585;249586	249582			21	
LEEEMRK	1	Unmodified	933.45897	0.45896661	3216	Q7L014;P31146	DDX46;CORO1A	Probable ATP-dependent RNA helicase DDX46;Coronin-1A	yes	no	0	0	0	1		By matching	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	8.8347	8.6433	2	0.020524	6243	160511_QHF_FH_JSI11i_2	57.177	14.177			0.96508	0.9478	7.6401	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78236	0.94668	NaN	1	0	Median	0.96508	0.9478	NaN	1	0	Median	1.0632	1.0813	NaN	1	0	Median	253690000	142040000	111650000	0	0	0	73395000	41362000	32032000	146460000	83619000	62838000	33840000	17057000	16783000	29746	3216	28140	184696;184697;184698	249587	249587			1	
LEEGPPVTTVLTR	0	Unmodified	1410.7718	0.77184455	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.834	59.73	2	0.0037545	52968	160511_QHF_FH_JSI9i_1	63.408	35.637			0.24868	0.20456	NaN	1	1	Median	0.24868	0.20456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	372120000	308500000	63618000	372120000	308500000	63618000	0	0	0	0	0	0	0	0	0	29747	903	28141	184699	249588	249588			1	
LEEGPPVTTVLTREDGLK	1	Unmodified	1953.0419	0.0418714	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.851	65.558	3	0.025102	56480	160511_QHF_FH_JSI12i_3	35.329	17.823			0.89892	0.91879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89892	0.91879	NaN	1	1	Median	68248000	27669000	40579000	0	0	0	0	0	0	0	0	0	68248000	27669000	40579000	29748	903	28142	184700	249589	249589			1	
LEEHFKNQELR	1	Acetyl (K)	1483.7419	0.74194141	127	O00410	IPO5	Importin-5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		44.275	33.951	3	0.00042031	19254	160513_QHF_FH_JSI11Kac_5	80.522	60.683			1.3384	1.3311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3384	1.3311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20274000	8729400	11545000	0	0	0	0	0	0	20274000	8729400	11545000	0	0	0	29749	127	28143	184701	249590	249590	81		1	
LEEIEADK	1	Unmodified	945.46549	0.46549177	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	20.805	20.156	2	0.014866	17473	160511_QHF_FH_JSI10i_1	60.436	24.041			0.58497	0.65634	32.474	5	5	Median	1.1114	0.9146	44.873	2	2	Median	0.56322	0.65634	NaN	1	1	Median	0.57769	0.56131	NaN	1	1	Median	0.58497	0.59556	NaN	1	1	Median	417440000	216970000	200460000	160990000	78859000	82133000	83964000	44775000	39189000	87806000	49133000	38674000	84676000	44208000	40468000	29750	5014	28144	184702;184703;184704;184705;184706	249591;249592;249593;249594;249595	249593			5	
LEEIQQQILQQK	1	Unmodified	1496.8199	0.81985738	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.68	53.142	2	2.3793E-07	47249	160511_QHF_FH_JSI9i_1	112.36	95.686			1.5471	1.5344	30.74	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2958	1.2346	NaN	1	1	Median	1.8472	1.9069	NaN	1	1	Median	45736000	13272000	32464000	0	0	0	0	0	0	21724000	7760200	13964000	24011000	5512000	18499000	29751	3811	28145	184707;184708;184709	249596;249597;249598	249598			3	
LEELDADK	1	Unmodified	931.44984	0.44984171	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.643	21.514	2	0.038684	18484	160511_QHF_FH_JSI11i_1	48.283	14.486			0.45666	0.45118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45666	0.45118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136040000	81828000	54209000	0	0	0	0	0	0	136040000	81828000	54209000	0	0	0	29752	5279	28146	184710	249599	249599			1	
LEELHVIDVK	1	Unmodified	1193.6656	0.66558856	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	4	3	52.54	51.764	2;3	3.3948E-06	45356	160511_QHF_FH_JSI9i_2	84.658	70.452			0.86419	0.9189	12.852	11	3	Median	1.1113	0.95651	5.6725	2	0	Median	0.66538	0.81392	1.832	2	1	Median	0.92463	0.91262	17.234	4	2	Median	0.85355	0.92967	12.895	3	0	Median	1393700000	773600000	620050000	216470000	107000000	109470000	224880000	127240000	97641000	638960000	350970000	287990000	313340000	188390000	124950000	29753	2734	28147	184711;184712;184713;184714;184715;184716;184717;184718;184719;184720;184721	249600;249601;249602;249603;249604;249605;249606;249607;249608;249609;249610;249611;249612;249613;249614	249605			14	
LEELILEDTSLSPEER	0	Unmodified	1871.9364	0.93640328	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	79.038	78.696	2	1.2702E-16	71473	160511_QHF_FH_JSI10i_1	119.69	96.084			0.85794	0.87485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85794	0.87485	NaN	1	1	Median	24903000	13344000	11560000	0	0	0	6244200	0	6244200	0	0	0	18659000	13344000	5315600	29754	2592	28148	184722;184723;184724	249615;249616;249617;249618	249618			4	
LEELSNQLHR	0	Unmodified	1237.6415	0.64149908	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			6.3182	5.8219	3	0.058617	3871	160511_QHF_FH_JSI10i_3	14.461	1.0267			1.2523	1.4471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2523	1.4471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75370000	36832000	38538000	0	0	0	75370000	36832000	38538000	0	0	0	0	0	0	29755	4932	28149	184725	249619	249619			1	
LEELTMDGAK	1	Unmodified	1105.5325	0.53252548	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	38.362	37.918	2	0.0024121	33522	160511_QHF_FH_JSI9i_1	63.184	36.8			1.972	1.9976	18.739	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7762	1.7497	NaN	1	0	Median	2.1894	2.2806	NaN	1	1	Median	207790000	80852000	126940000	0	0	0	0	0	0	128480000	54742000	73743000	79304000	26111000	53193000	29756	153	28150	184726;184727;184728;184729	249620;249621;249622;249623;249624	249624			5	
LEELYTK	1	Unmodified	894.46985	0.46984887	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS		By MS/MS		4.25	5.63	3						1			1		3		27.922	27.363	2	0.023222	24157	160511_QHF_FH_JSI11i_1	55.676	15.573			0.87213	0.7215	182.92	3	1	Median	0.87213	0.7215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1452	2.0934	243.63	2	1	Median	NaN	NaN	NaN	0	0	Median	486080000	197230000	288850000	197430000	85270000	112160000	0	0	0	288650000	111960000	176690000	0	0	0	29757	5441	28151	184730;184731;184732;184733	249625;249626;249627;249628	249625			4	
LEELYTKK	2	Acetyl (K)	1064.5754	0.57537657	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		46.568	36.203	2	0.043117	21468	160513_QHF_FH_JSI11Kac_4	79.474	43.079			0.18878	0.18631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18878	0.18631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8964000	7405600	1558400	0	0	0	0	0	0	8964000	7405600	1558400	0	0	0	29758	5441	28152	184734	249629	249629			1	
LEEMFPDEVDTPR	0	Unmodified	1576.7079	0.70792366	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.221	62.587	2	2.5307E-07	57040	160511_QHF_FH_JSI12i_1	137.89	113.12			0.90362	0.9977	5.5107	4	0	Linear	1.1673	0.95873	NaN	1	0	Median	0.90479	1.0484	NaN	1	0	Median	0.94507	0.9404	NaN	1	0	Median	1.0229	1.0382	NaN	1	0	Median	508410000	267780000	240620000	92911000	39474000	53437000	152980000	89930000	63047000	133390000	69119000	64274000	129120000	69261000	59864000	29759	2795	28153	184735;184736;184737;184738	249630;249631;249632;249633;249634	249632			4	
LEEMFPDEVDTPRDVAAR	0	Unmodified	2088.9786	0.97861922	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.535	1	5	1							1	2	2	2	62.755	62.087	3	1.0842E-07	53552	160511_QHF_FH_JSI12i_3	100.35	91.257			1.189	1.269	14.312	5	1	Median	NaN	NaN	NaN	0	0	Median	0.98786	1.1922	13.168	2	0	Median	1.6449	1.6201	NaN	1	1	Median	1.2194	1.269	0.0090783	2	0	Median	213990000	96055000	117940000	0	0	0	91545000	48565000	42980000	47267000	16054000	31213000	75180000	31437000	43743000	29760	2795	28154	184739;184740;184741;184742;184743;184744;184745	249635;249636;249637;249638;249639;249640;249641;249642;249643	249643			9	
LEEMGFK	1	Unmodified	852.40514	0.40514012	2498	Q14141;Q9NVA2	SEPT6;SEPT11	Septin-6;Septin-11	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		34.649	34.049	2	0.039594	30495	160511_QHF_FH_JSI10i_1	49.59	23.763			0.85941	0.86733	21.904	3	1	Median	1.0749	0.90021	NaN	1	0	Median	0.50082	0.60547	NaN	1	1	Median	0.85941	0.86733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	268620000	142190000	126440000	73761000	38304000	35457000	80018000	47268000	32750000	114850000	56615000	58231000	0	0	0	29761	2498	28155	184746;184747;184748	249644;249645	249644			2	
LEEMGFTDVGPENKPVSVQETYEAK	2	Unmodified	2796.3164	0.31639128	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								4	3	2	3	67.533	66.72	3	4.2708E-21	60732	160511_QHF_FH_JSI11i_1	128.52	116.21			0.95945	0.97157	21.864	11	7	Median	0.95945	0.84129	14.631	3	2	Median	0.92006	1.0645	18.393	3	2	Median	0.90978	0.90107	36.932	2	1	Median	0.95987	0.98554	26.048	3	2	Median	436720000	231290000	205430000	68227000	33381000	34846000	148200000	68414000	79785000	80648000	44521000	36127000	139650000	84978000	54669000	29762	5192	28156	184749;184750;184751;184752;184753;184754;184755;184756;184757;184758;184759;184760	249646;249647;249648;249649;249650;249651;249652;249653;249654;249655;249656;249657;249658;249659;249660;249661;249662;249663;249664	249648			19	
LEEMINELAVAMTAVK	1	Unmodified	1760.9052	0.90524326	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	3	1	101.59	101.5	2;3	3.0021E-52	92258	160511_QHF_FH_JSI10i_1	222.1	179.71			0.78915	0.85955	50.789	8	3	Median	0.2741	0.22948	NaN	1	0	Median	0.56122	0.69074	12.581	3	2	Plateau	0.84211	0.86681	7.0746	3	1	Plateau	1.0958	1.2229	NaN	1	0	Median	2593200000	1512500000	1080600000	230560000	193520000	37046000	559140000	338550000	220590000	1285300000	702240000	583030000	518200000	278230000	239970000	29763	2655	28157	184761;184762;184763;184764;184765;184766;184767;184768	249665;249666;249667;249668;249669;249670;249671;249672;249673;249674;249675	249669			11	
LEENIDNIK	1	Unmodified	1086.5557	0.55570376	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	39.322	35.279	2	0.0045543	30961	160511_QHF_FH_JSI9i_1	56.729	23.889			1.1514	1.1924	17.909	5	0	Linear	1.2164	1.0123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0212	0.99316	31.365	2	0	Median	1.0354	1.0989	13.745	2	0	Median	483530000	295510000	188020000	150050000	93450000	56602000	0	0	0	171470000	85681000	85790000	162010000	116380000	45627000	29764	3896	28158	184769;184770;184771;184772;184773	249676;249677;249678;249679;249680	249679			5	
LEENLPILQQPTEK	1	Unmodified	1650.8829	0.88285156	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	68.832	67.38	2;3	6.7845E-52	61124	160511_QHF_FH_JSI10i_1	245.69	182.06			0.8897	0.92626	13.334	9	1	Linear	1.1063	0.90621	2.2956	2	0	Median	0.79688	0.92867	6.4748	2	0	Median	0.94132	0.9138	1.9164	2	0	Median	0.93006	0.98647	18.235	3	1	Plateau	2393600000	1238400000	1155300000	488620000	243780000	244830000	697570000	371520000	326060000	617790000	306320000	311460000	589670000	316760000	272910000	29765	434	28159	184774;184775;184776;184777;184778;184779;184780;184781;184782	249681;249682;249683;249684;249685;249686;249687;249688;249689;249690;249691;249692;249693;249694;249695;249696;249697;249698;249699;249700;249701;249702;249703;249704;249705;249706	249697			26	
LEEQDEFEK	1	Unmodified	1165.5139	0.51389853	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.232	25.889	2	0.0010884	22810	160511_QHF_FH_JSI10i_1	80.755	35.075			0.64022	0.75318	43.069	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.64022	0.75318	NaN	1	1	Median	0.79096	0.7802	NaN	1	1	Median	1.5952	1.6153	NaN	1	1	Median	454340000	199520000	254820000	0	0	0	142010000	83335000	58671000	128750000	68611000	60137000	183580000	47573000	136010000	29766	4991	28160	184783;184784;184785	249707;249708;249709;249710	249710			4	
LEEQLMK	1	Unmodified	889.4579	0.45790397	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.539	28.22	2	0.014714	24995	160511_QHF_FH_JSI10i_1	65.676	13.377			0.42711	0.5032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42711	0.5032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108910000	63800000	45109000	0	0	0	108910000	63800000	45109000	0	0	0	0	0	0	29767	998	28161	184786	249711	249711			1	
LEEQLQDLDVALK	1	Unmodified	1512.8035	0.80353861	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.068	73.743	2	0.0055604	67084	160511_QHF_FH_JSI11i_1	53.013	20.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29768	4253	28162	184787	249712	249712			1	
LEEQRPER	0	Unmodified	1055.536	0.53597137	1036	P13693;Q9HAU6	TPT1;TPT1P8	Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.37	2	8	4					4		3	4	6	5	7.0513	4.7483	2;3	0.00078005	4068	160511_QHF_FH_JSI12i_3	76.679	62.472			0.92687	0.98279	13.275	18	0	Median	1.2249	1.0051	1.8368	3	0	Plateau	0.86207	1.0305	25.346	4	0	Median	0.97449	0.96091	5.2408	6	0	Median	0.87864	0.88905	11.598	5	0	Median	4307900000	2123000000	2184900000	578850000	248040000	330810000	982600000	525030000	457570000	1723300000	813820000	909510000	1023100000	536160000	486990000	29769	1036	28163	184788;184789;184790;184791;184792;184793;184794;184795;184796;184797;184798;184799;184800;184801;184802;184803;184804;184805	249713;249714;249715;249716;249717;249718;249719;249720;249721;249722;249723;249724;249725;249726;249727;249728;249729;249730;249731;249732;249733;249734;249735	249735			23	
LEERPHLPSTFNYNPAQQAF	0	Unmodified	2358.1393	0.13929403	5165	Q9NZN8	CNOT2	CCR4-NOT transcription complex subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	75.168	74.602	3	5.6867E-05	64793	160511_QHF_FH_JSI12i_3	60.034	56.697			1.0814	1.0414	6.1124	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.96495	1.1269	NaN	1	1	Median	1.11	1.0414	NaN	1	0	Median	0.98908	0.9992	NaN	1	0	Median	201250000	109110000	92147000	0	0	0	25201000	15178000	10023000	120160000	57822000	62335000	55896000	36107000	19789000	29770	5165	28164	184806;184807;184808;184809	249736;249737;249738;249739;249740	249739			5	
LEESAVTVMFDK	1	Unmodified	1367.6643	0.66426794	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	69.986	69.445	2	2.688E-07	61698	160511_QHF_FH_JSI9i_1	111.86	68.772			1.1066	1.2426	30.404	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0817	1.3197	NaN	1	1	Median	0.97773	0.96372	45.329	2	2	Median	1.1321	1.17	NaN	1	1	Median	384390000	186420000	197970000	0	0	0	27080000	10323000	16757000	222300000	107180000	115120000	135010000	68913000	66097000	29771	5160	28165	184810;184811;184812;184813;184814	249741;249742;249743;249744;249745	249744			5	
LEESGWQVNNNMNHNMNK	1	Unmodified	2157.932	0.93202015	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.397	39.397	3	0.0011328	34634	160511_QHF_FH_JSI11i_3	54.281	45.184			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12499000	12499000	0	0	0	0	0	0	0	12499000	12499000	0	0	0	0	29772	2667	28166	184815;184816	249746;249747	249746			2	
LEESSTIGQDQTLMER	0	Unmodified	1835.8571	0.8571071	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.859	48.179	2	1.7255E-30	43591	160511_QHF_FH_JSI11i_1	194.7	132.39			1.0989	1.157	13.054	4	0	Median	1.5631	1.2762	NaN	1	0	Median	1.1279	1.3436	NaN	1	0	Median	1.0707	1.0462	NaN	1	0	Median	0.98917	1.049	NaN	1	0	Median	231970000	116640000	115330000	52595000	22529000	30066000	60652000	30432000	30220000	57585000	30990000	26595000	61138000	32687000	28451000	29773	4242	28167	184817;184818;184819;184820	249748;249749;249750;249751;249752;249753;249754;249755	249749			8	
LEESYDMESVLR	0	Unmodified	1469.6708	0.67080988	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.033	63.408	2	1.0276E-05	57763	160511_QHF_FH_JSI12i_1	118.4	81.71			1.0683	1.0682	7.5823	4	0	Median	1.2342	1.0262	NaN	1	0	Median	1.002	1.1807	NaN	1	0	Median	1.139	1.1119	NaN	1	0	Median	0.9434	1.0003	NaN	1	0	Median	1247700000	591060000	656620000	213980000	98333000	115650000	399440000	198590000	200850000	343080000	149590000	193490000	291180000	144550000	146630000	29774	1425	28168	184821;184822;184823;184824	249756;249757;249758;249759;249760;249761;249762;249763	249759			8	
LEESYTLNSDLAR	0	Unmodified	1509.7311	0.73110195	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.901	51.142	2	7.476E-23	46026	160511_QHF_FH_JSI10i_1	149.23	43.835			0.76851	0.75173	5.5329	3	0	Plateau	0.90706	0.75173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76926	0.74619	NaN	1	0	Median	0.76851	0.8241	NaN	1	0	Median	754140000	420680000	333460000	199820000	108690000	91124000	0	0	0	272000000	146900000	125100000	282320000	165080000	117230000	29775	1363	28169	184825;184826;184827;184828	249764;249765;249766;249767;249768;249769	249768			6	
LEETLPVIR	0	Unmodified	1068.6179	0.61791009	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	57.763	57.005	2	0.00023652	48868	160511_QHF_FH_JSI12i_2	84.498	40.103			0.99051	1.0735	9.5308	6	1	Median	1.3408	1.1367	NaN	1	0	Median	0.84274	1.0083	5.6346	2	1	Median	1.146	1.1494	15.053	2	0	Median	0.97243	1.0983	NaN	1	0	Median	1029000000	521970000	507010000	162900000	71152000	91752000	298560000	169380000	129170000	413650000	198660000	214990000	153870000	82776000	71095000	29776	357	28170	184829;184830;184831;184832;184833;184834	249770;249771;249772	249771			3	
LEETQALLR	0	Unmodified	1071.5924	0.59242362	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	40.871	40.418	2	0.0081493	34568	160511_QHF_FH_JSI11i_2	52.591	9.3446			0.97027	0.97398	17.476	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78029	0.91805	NaN	1	0	Median	1.1572	1.1649	16.949	2	0	Median	0.88346	0.89615	NaN	1	0	Median	352380000	190480000	161900000	0	0	0	88551000	53447000	35104000	176310000	84859000	91451000	87522000	52174000	35349000	29777	2516	28171	184835;184836;184837;184838	249773;249774;249775;249776;249777	249777			5	
LEEVLSTEGAEENGNSDK	1	Unmodified	1919.8596	0.85960952	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.212	37.607	2	8.9463E-11	34116	160511_QHF_FH_JSI12i_1	107.14	84.607			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29778	279	28172	184839	249778	249778			1	
LEEVLTNK	1	Unmodified	944.51786	0.51786169	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	1	2	3	28.2	26.548	2	0.0012624	22842	160511_QHF_FH_JSI9i_1	91.853	23.873			0.54387	0.59114	102.3	7	5	Median	1.1611	0.94446	NaN	1	0	Median	0.26617	0.32626	NaN	1	1	Median	0.44552	0.43495	193.4	2	1	Median	0.54387	0.59114	80.779	3	3	Median	1481000000	797970000	683010000	290450000	120220000	170230000	281400000	188950000	92456000	390730000	232770000	157960000	518390000	256030000	262360000	29779	2093	28173	184840;184841;184842;184843;184844;184845;184846	249779;249780;249781;249782;249783;249784	249783			6	
LEEVLTNKK	2	Unmodified	1072.6128	0.61282471	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		14	8							4	5	6	7	18.997	18.43	2;3	0.00023623	15186	160511_QHF_FH_JSI11i_3	80.688	41.384			2.1755	2.5797	123.37	22	22	Median	1.8714	1.5545	126.4	4	4	Median	2.1495	2.4492	86.003	5	5	Median	3.2272	3.3117	99.619	6	6	Median	0.29792	0.30869	169.66	7	7	Median	6050100000	2885500000	3164700000	887790000	410580000	477210000	1271900000	588730000	683140000	2210000000	981610000	1228300000	1680500000	904540000	775990000	29780	2093	28174	184847;184848;184849;184850;184851;184852;184853;184854;184855;184856;184857;184858;184859;184860;184861;184862;184863;184864;184865;184866;184867;184868	249785;249786;249787;249788;249789;249790;249791;249792;249793;249794;249795;249796;249797;249798;249799;249800;249801;249802;249803;249804;249805;249806;249807	249785			23	
LEFFGFEDHETGGDEGGSGSSNYK	1	Unmodified	2565.0568	0.056805775	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.865	70.567	3	7.1117E-11	61216	160511_QHF_FH_JSI12i_3	90.534	76.373			1.2044	1.2115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2044	1.2115	NaN	1	0	Median	36044000	12539000	23505000	0	0	0	0	0	0	0	0	0	36044000	12539000	23505000	29781	3282	28175	184869	249808	249808			1	
LEFMHILTR	0	Unmodified	1158.6219	0.62194961	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	3	2	2	73.13	68.492	3	4.8751E-06	61812	160511_QHF_FH_JSI11i_3	92.239	92.239			1.0901	0.92838	32.343	8	0	Median	1.1045	0.92838	6.8289	2	0	Median	0.61648	0.70754	1.5847	2	0	Median	1.1514	1.0868	10.443	2	0	Median	1.0687	1.1177	67.294	2	0	Median	402160000	207920000	194240000	108190000	48943000	59245000	107540000	67979000	39557000	121450000	60273000	61180000	64985000	30725000	34259000	29782	1539	28176	184870;184871;184872;184873;184874;184875;184876;184877;184878	249809;249810;249811;249812;249813;249814;249815;249816;249817;249818;249819;249820;249821;249822;249823	249810			14	
LEFPQIIYMDR	0	Unmodified	1423.717	0.71697221	4229	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		95.67	95.422	2	0.0429	83626	160511_QHF_FH_JSI11i_2	37.191	22.525			1.3117	1.3186	19.867	3	0	Plateau	1.1672	1.0216	NaN	1	0	Median	1.2043	1.5109	NaN	1	0	Median	1.3117	1.3186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	327500000	137480000	190020000	104180000	46549000	57629000	106500000	50985000	55519000	116820000	39944000	76872000	0	0	0	29783	4229	28177	184879;184880;184881	249824	249824			1	
LEFSDETFGSNIPK	1	Unmodified	1582.7515	0.75150304	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2									1	3	3	71.133	70.675	2;3	3.4344E-06	64244	160511_QHF_FH_JSI11i_1	132.59	86.429			1.2016	1.1944	20.455	6	3	Median	NaN	NaN	NaN	0	0	Median	0.74683	0.84642	NaN	1	0	Median	1.148	1.1487	9.1126	3	2	Median	1.3788	1.4353	4.5882	2	1	Median	324350000	139000000	185350000	0	0	0	31895000	16110000	15785000	172500000	81124000	91380000	119950000	41762000	78186000	29784	4221	28178	184882;184883;184884;184885;184886;184887;184888	249825;249826;249827;249828;249829;249830;249831;249832	249827			8	
LEGALGADTTEDGDEK	1	Unmodified	1619.7162	0.71623974	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	31.224	30.622	2	1.8221E-05	27476	160511_QHF_FH_JSI12i_1	115.8	99.272			0.54207	0.54455	41.666	4	2	Median	1.032	0.82943	NaN	1	0	Median	0.33583	0.38965	NaN	1	1	Median	0.39652	0.38456	NaN	1	1	Median	0.74105	0.76104	NaN	1	0	Median	732250000	440270000	291970000	178100000	87414000	90690000	198790000	144920000	53864000	167280000	102000000	65283000	188080000	105940000	82135000	29785	5161	28179	184889;184890;184891;184892;184893	249833;249834;249835;249836;249837	249834			5	
LEGALLALGQFQHALEELMSWLTHTEELLDAQRPISGDPK	1	Unmodified	4456.2737	0.27368561	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			105.03	99.31	5	2.0207E-05	58813	160513_QHF_FH_JSI10Kac_6	56.231	44.424			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104260000	104260000	0	0	0	0	104260000	104260000	0	0	0	0	0	0	0	29786	5458	28180	184894	249838	249838			1	
LEGDAALNR	0	Unmodified	957.48796	0.48795855	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.243	18.746	2	0.017274	16147	160511_QHF_FH_JSI12i_1	52.716	7.6347			1.3124	1.2135	10.638	4	1	Median	1.3644	1.1121	NaN	1	0	Median	1.0031	1.1859	NaN	1	0	Median	1.2732	1.2418	NaN	1	0	Median	1.3529	1.429	NaN	1	1	Median	954160000	423560000	530610000	224100000	90061000	134040000	258960000	125530000	133430000	258450000	120610000	137840000	212640000	87357000	125280000	29787	5548	28181	184895;184896;184897;184898	249839;249840	249840			2	
LEGDLSLADK	1	Unmodified	1059.5448	0.54480473	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	45.449	41.872	2	0.00041175	37852	160511_QHF_FH_JSI12i_1	75.387	38.83			0.93068	0.94085	25.592	6	1	Median	1.126	0.93872	NaN	1	0	Median	0.93068	1.0931	1.3912	2	0	Median	0.74057	0.71869	38.412	2	1	Median	0.82256	0.86257	NaN	1	0	Median	1221400000	609260000	612100000	211970000	88971000	122990000	385100000	197900000	187200000	380780000	188710000	192070000	243520000	133680000	109840000	29788	3405	28182	184899;184900;184901;184902;184903;184904	249841;249842;249843;249844;249845;249846;249847	249843			7	
LEGDLTGPSVGVEVPDVELECPDAK	1	Unmodified	2624.2527	0.25272839	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	89.092	88.808	3	0.00060468	80607	160511_QHF_FH_JSI10i_1	44.74	37.708			1.4081	1.5469	0.9449	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3337	1.5366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4866	1.5573	NaN	1	0	Median	56514000	24406000	32109000	0	0	0	26965000	10379000	16586000	0	0	0	29549000	14026000	15523000	29789	2286	28183	184905;184906	249848;249849;249850	249850			3	
LEGDNVNPESQLIQQSEQSESETAGSTK	1	Unmodified	3004.3745	0.3745111	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.213	61.578	3	7.0067E-42	55710	160511_QHF_FH_JSI10i_1	169.44	167.35			1.1038	1.0816	8.5462	4	0	Median	1.1497	0.94281	NaN	1	0	Median	0.92492	1.0827	NaN	1	0	Median	1.1078	1.0804	NaN	1	0	Median	1.0999	1.1552	NaN	1	0	Median	403830000	186250000	217570000	106870000	40971000	65901000	97085000	59791000	37294000	90370000	38767000	51603000	109500000	46725000	62776000	29790	3921	28184	184907;184908;184909;184910	249851;249852;249853;249854;249855;249856;249857;249858;249859	249856			9	
LEGDSTDLSDQIAELQAQIAELK	1	Unmodified	2486.2388	0.23879289	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	102.04	101.94	2;3	0	92540	160511_QHF_FH_JSI12i_1	464.25	432.18			1.1619	1.121	12.815	5	1	Median	1.2476	1.0144	NaN	1	1	Median	0.94958	1.1195	NaN	1	0	Median	1.1537	1.1255	0.56865	2	0	Median	1.3671	1.4329	NaN	1	0	Median	1098300000	530300000	567970000	55541000	21465000	34075000	529220000	280590000	248630000	357370000	163250000	194120000	156140000	64995000	91142000	29791	1436	28185	184911;184912;184913;184914;184915	249860;249861;249862;249863;249864	249861			5	
LEGELTK	1	Unmodified	788.42798	0.42798405	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			15.858	15.613	2	0.042889	13026	160511_QHF_FH_JSI10i_1	45.952	2.1442			0.61909	0.73721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61909	0.73721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181980000	128250000	53724000	0	0	0	181980000	128250000	53724000	0	0	0	0	0	0	29792	2604	28186	184916	249865	249865			1	
LEGENTQDK	1	Unmodified	1032.4724	0.47236807	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	2	3	1	6.623	3.3028	2	0.00011924	3868	160511_QHF_FH_JSI10i_1	92.051	65.262			0.84641	0.88241	16.75	7	0	Median	1.3905	1.1617	NaN	1	0	Median	0.84923	0.99634	15.584	2	0	Median	0.92127	0.87695	10.812	3	0	Plateau	0.82814	0.88241	NaN	1	0	Median	1325200000	633270000	691980000	334590000	141370000	193220000	317470000	150940000	166530000	330910000	145530000	185380000	342280000	195430000	146850000	29793	3213	28187	184917;184918;184919;184920;184921;184922;184923	249866;249867;249868;249869;249870;249871	249870			6	
LEGEVTPNSLSTSYK	1	Unmodified	1623.7992	0.79918151	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.257	48.757	2	0.00051089	44316	160511_QHF_FH_JSI12i_1	88.187	71.161			0.54718	0.55296	154.69	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.028524	0.031296	NaN	1	1	Median	0.37787	0.35633	NaN	1	1	Median	0.54718	0.55296	NaN	1	0	Median	63732000	46717000	17015000	0	0	0	11982000	11425000	556880	23260000	17998000	5261400	28490000	17293000	11197000	29794	3434	28188	184924;184925;184926	249872;249873;249874	249873			3	
LEGFHTQISK	1	Unmodified	1158.6033	0.60332266	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.82		9	6					1	4	6	4	5	5	33.429	30.54	2;3	8.6545E-12	26141	160511_QHF_FH_JSI11i_3	143.96	110.73			1.0151	0.99304	32.509	20	5	Median	1.1129	0.91716	39.881	6	3	Median	1.0917	1.3209	20.348	4	1	Median	0.99964	0.94909	3.7744	5	0	Median	0.99061	1.0258	37.266	5	1	Median	6040000000	2701700000	3338300000	733360000	370200000	363160000	767180000	386230000	380950000	2140100000	951720000	1188400000	2399400000	993570000	1405800000	29795	2244	28189	184927;184928;184929;184930;184931;184932;184933;184934;184935;184936;184937;184938;184939;184940;184941;184942;184943;184944;184945;184946	249875;249876;249877;249878;249879;249880;249881;249882;249883;249884;249885;249886;249887;249888;249889;249890;249891;249892;249893;249894;249895;249896;249897;249898;249899;249900;249901;249902;249903;249904;249905;249906;249907	249875			32	
LEGGEVDLK	1	Unmodified	958.49713	0.49712625	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	34.087	30.087	2	0.00015459	26787	160511_QHF_FH_JSI11i_1	88.948	52.553			0.72293	0.81723	13.726	5	1	Median	1.0314	0.82958	NaN	1	0	Median	0.72293	0.8521	NaN	1	0	Median	0.74119	0.71205	19.484	2	0	Median	0.64759	0.69412	NaN	1	1	Median	1040800000	637150000	403680000	259740000	148500000	111240000	3421300	1952000	1469400	370450000	228340000	142110000	407230000	258360000	148870000	29796	2286	28190	184947;184948;184949;184950;184951	249908;249909;249910;249911;249912;249913	249908			6	
LEGGGGPAGGFEDEGEDK	1	Unmodified	1719.7224	0.72238775	1709	P50548	ERF	ETS domain-containing transcription factor ERF	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		34.464	34.218	2	0.00063366	30727	160511_QHF_FH_JSI11i_1	61.11	51.788			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29797	1709	28191	184952	249914	249914			1	
LEGGSGGDSEVQR	0	Unmodified	1289.5848	0.58477206	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	11.978	8.6454	2	6.9768E-16	7723	160511_QHF_FH_JSI9i_1	166.97	153.39			0.95564	1.0387	11.343	7	0	Median	1.2584	1.0387	NaN	1	0	Median	0.82891	0.97433	19.636	2	0	Median	1.0316	1.0075	12.183	2	0	Median	0.95578	1.0188	14.287	2	0	Median	2311400000	1164800000	1146600000	570490000	273610000	296880000	530070000	275050000	255030000	541040000	286240000	254810000	669750000	329880000	339870000	29798	1984	28192	184953;184954;184955;184956;184957;184958;184959	249915;249916;249917;249918;249919;249920;249921;249922;249923;249924	249923			10	
LEGHGLPANLPR	0	Unmodified	1272.6939	0.693869	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	39.669	38.867	3	0.0033041	33321	160511_QHF_FH_JSI11i_2	43.604	21.846			1.3505	1.2704	11.257	5	0	Median	1.4107	1.203	NaN	1	0	Median	0.90738	1.0903	NaN	1	0	Median	1.4086	1.4448	NaN	1	0	Median	1.24	1.3278	6.2563	2	0	Median	873160000	386680000	486480000	138220000	53499000	84717000	147580000	82040000	65543000	137250000	59661000	77592000	450110000	191480000	258630000	29799	5163	28193	184960;184961;184962;184963;184964	249925;249926;249927	249926			3	
LEGHKEGIVQTEQIR	1	Acetyl (K)	1777.9323	0.93226137	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		48.321	37.836	3	0.0026721	21201	160513_QHF_FH_JSI11Kac_5	51.03	45.39			0.26398	0.25708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26398	0.25708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7199900	5361800	1838100	0	0	0	0	0	0	7199900	5361800	1838100	0	0	0	29800	3090	28194	184965	249928	249928	2766		1	
LEGIITR	0	Unmodified	800.4756	0.47560295	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	32.017	31.231	2	0.017878	27159	160511_QHF_FH_JSI9i_2	60.799	0			0.64475	0.65002	34.747	5	0	Median	0.74828	0.65002	NaN	1	0	Median	0.60305	0.7254	NaN	1	0	Median	0.96705	0.94663	55.434	2	0	Median	0.54516	0.60421	NaN	1	0	Median	605620000	338650000	266970000	105790000	54749000	51042000	146950000	95197000	51750000	223980000	116410000	107570000	128900000	72289000	56614000	29801	5479	28195	184966;184967;184968;184969;184970	249929	249929			1	
LEGKAGHGPGPGPGRPKSKNLQPK	4	3 Acetyl (K)	2532.3561	0.35610352	539	O75528	TADA3	Transcriptional adapter 3	yes	yes	3	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	42.005	32.826	4	3.5292E-05	18292	160513_QHF_FH_JSI10Kac_6	62.237	44.642			1.0942	1.0942	22.81	4	0	Median	1.3909	1.1855	NaN	1	0	Median	1.1859	1.4208	NaN	1	0	Median	1.0095	1.01	NaN	1	0	Median	0.7568	0.83195	NaN	1	0	Median	59531000	27448000	32084000	8639700	3808900	4830800	32502000	14207000	18295000	7756900	3667700	4089200	10633000	5764700	4868300	29802	539	28196	184971;184972;184973;184974	249930;249931;249932	249932	279;280;282		3	
LEGLGSSEADQDGLASTVR	0	Unmodified	1903.9123	0.91231379	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	56.395	55.699	2;3	1.7333E-297	49564	160511_QHF_FH_JSI9i_1	377.44	311.6			0.85456	0.93719	11.998	6	1	Median	1.1472	0.94467	NaN	1	0	Median	0.68245	0.82769	16.447	2	0	Median	1.0154	0.98888	NaN	1	0	Median	0.85456	0.90629	13.999	2	1	Median	2829900000	1407400000	1422500000	578260000	242510000	335750000	709580000	414460000	295120000	734600000	360780000	373830000	807420000	389640000	417780000	29803	2252	28197	184975;184976;184977;184978;184979;184980	249933;249934;249935;249936;249937;249938;249939;249940;249941;249942;249943	249941			11	
LEGLTDEINFLR	0	Unmodified	1418.7405	0.74054442	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.65	2.9	4	11	4					1		4	6	7	3	89.51	88.446	2;3	8.4767E-32	80855	160511_QHF_FH_JSI10i_1	194.54	173.08		+	0.94724	0.90353	21.201	19	4	Median	1.0381	0.85117	21.46	4	0	Median	0.66747	0.79971	29.785	5	1	Median	0.94853	0.92653	13.929	7	3	Median	0.89855	0.99657	7.7314	3	0	Median	9562300000	4955700000	4606700000	1538600000	829760000	708880000	2360100000	1329500000	1030500000	3428200000	1815300000	1612900000	2235400000	981030000	1254400000	29804	51	28198	184981;184982;184983;184984;184985;184986;184987;184988;184989;184990;184991;184992;184993;184994;184995;184996;184997;184998;184999;185000	249944;249945;249946;249947;249948;249949;249950;249951;249952;249953;249954;249955;249956;249957;249958;249959;249960;249961;249962;249963;249964;249965;249966;249967;249968;249969;249970;249971;249972;249973;249974;249975;249976;249977	249958			34	
LEGMLSQSVSSQYNMAGVR	0	Unmodified	2055.9718	0.9717597	1816	P54105	CLNS1A	Methylosome subunit pICln	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.68	4	8	3							2	3	5	5	67.598	66.96	2;3	2.6385E-99	58953	160511_QHF_FH_JSI9i_2	322.23	306.84			0.925	1.0078	14.721	14	1	Median	1.3726	1.1935	19.895	2	0	Median	0.86801	1.0774	7.8165	3	1	Plateau	0.98356	0.99677	16.382	5	0	Median	0.83023	0.88378	13.539	4	0	Linear	749830000	377540000	372290000	109220000	53171000	56049000	155580000	84816000	70759000	316970000	156250000	160720000	168070000	83306000	84760000	29805	1816	28199	185001;185002;185003;185004;185005;185006;185007;185008;185009;185010;185011;185012;185013;185014;185015	249978;249979;249980;249981;249982;249983;249984;249985;249986;249987;249988;249989;249990;249991;249992;249993;249994;249995;249996;249997;249998;249999	249989			22	
LEGNMNEALEYYER	0	Unmodified	1729.7618	0.76175015	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	64.228	62.925	2	3.5344E-07	57200	160511_QHF_FH_JSI10i_1	89.301	65.314			0.85041	0.91794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85041	0.91794	NaN	1	1	Median	12637000	8109600	4527200	0	0	0	0	0	0	0	0	0	12637000	8109600	4527200	29806	942	28200	185016;185017	250000;250001	250001			2	
LEGNSPQGSNQGVK	1	Unmodified	1413.6848	0.68482046	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		11.235	10.446	2	0.00016217	7927	160511_QHF_FH_JSI9i_1	95.401	80.734			0.69262	0.56707	NaN	1	0	Median	0.69262	0.56707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43194000	23812000	19383000	43194000	23812000	19383000	0	0	0	0	0	0	0	0	0	29807	1927	28201	185018;185019	250002;250003	250003			2	
LEGPDVSLK	1	Unmodified	956.51786	0.51786169	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	5									2	1	1	1	42.737	41.97	2	0.00072092	38189	160511_QHF_FH_JSI12i_1	75.378	57.343			0.78781	0.77319	46.003	5	1	Median	1.3631	1.1214	82.727	2	1	Median	0.61621	0.74074	NaN	1	0	Median	0.79511	0.77319	NaN	1	0	Median	0.78781	0.84145	NaN	1	0	Median	1100800000	593530000	507310000	279350000	128180000	151170000	267600000	170840000	96759000	294850000	160900000	133950000	259040000	133610000	125440000	29808	2286	28202	185020;185021;185022;185023;185024	250004;250005;250006;250007;250008;250009	250004			6	
LEGPGEQETK	1	Unmodified	1086.5193	0.51931826	4318	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				13.547	12.636	2	0.011582	9980	160511_QHF_FH_JSI9i_1	46.462	30.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29809	4318	28203	185025	250010	250010			1	
LEGQAQAEAK	1	Unmodified	1043.5247	0.52473799	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.8362	8.4732	2	1.1804E-05	6477	160511_QHF_FH_JSI12i_1	103.34	69.089			1.0252	0.92795	31.258	4	0	Median	0.92835	0.7729	NaN	1	0	Median	1.1846	1.4015	NaN	1	0	Median	1.1322	1.1141	NaN	1	0	Median	0.71608	0.72224	NaN	1	0	Median	535480000	266680000	268810000	116860000	65254000	51607000	173410000	78316000	95092000	115350000	53640000	61707000	129870000	69466000	60399000	29810	150	28204	185026;185027;185028;185029	250011;250012;250013;250014;250015;250016;250017;250018	250014			8	
LEGQATAVTPNK	1	Unmodified	1227.6459	0.64591575	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	20.23	19.591	2	0.00010814	17108	160511_QHF_FH_JSI12i_1	88.338	60.596			0.97753	0.9598	30.49	5	2	Median	1.6135	1.3297	46.101	2	2	Median	0.91411	1.0594	NaN	1	0	Median	0.97753	0.95211	NaN	1	0	Median	0.82204	0.85106	NaN	1	0	Median	193820000	91448000	102370000	62544000	24903000	37641000	39150000	20961000	18189000	45580000	23329000	22251000	46545000	22255000	24290000	29811	4512	28205	185030;185031;185032;185033;185034	250019;250020;250021;250022;250023;250024;250025;250026	250022			8	
LEGQGDVPTPK	1	Unmodified	1139.5823	0.58225287	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	27.973	25.749	2	5.6256E-05	22191	160511_QHF_FH_JSI9i_1	94.465	79.026			1.3109	1.2666	21.312	5	2	Median	1.4649	1.1861	NaN	1	0	Median	1.2142	1.475	NaN	1	1	Median	1.0824	1.0534	26.066	2	0	Median	1.4043	1.4685	NaN	1	1	Median	916560000	406770000	509780000	174960000	65378000	109580000	286340000	138080000	148260000	216080000	103320000	112750000	239180000	99990000	139190000	29812	5548	28206	185035;185036;185037;185038;185039;185040;185041	250027;250028;250029;250030;250031;250032;250033;250034;250035	250034			9	
LEGTEDLSDVLVR	0	Unmodified	1444.7409	0.74093835	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		70.744	70.12	2	0.00011094	63486	160511_QHF_FH_JSI10i_1	159.94	127.62			1.1136	0.99732	11.655	4	4	Median	1.2642	1.0389	12.534	2	2	Median	0.74811	0.8675	NaN	1	1	Median	1.0647	1.0461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	632780000	294720000	338060000	277930000	112170000	165760000	163010000	97787000	65226000	191840000	84762000	107070000	0	0	0	29813	2594	28207	185042;185043;185044;185045	250036;250037;250038;250039	250037			4	
LEGTNVQEAQK	1	Unmodified	1215.6095	0.60953025	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.566	15.121	2	1.5133E-05	12809	160511_QHF_FH_JSI12i_1	122.69	86.134			0.66815	0.6945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66815	0.6945	NaN	1	0	Median	150550000	88684000	61867000	0	0	0	0	0	0	0	0	0	150550000	88684000	61867000	29814	4122	28208	185046	250040;250041	250040			2	
LEGVEGVAHIIDPK	1	Unmodified	1475.7984	0.79839365	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	66.763	65.867	3	0.0037519	58264	160511_QHF_FH_JSI10i_2	43.03	27.999			0.85296	0.85832	8.5282	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79519	0.99607	NaN	1	0	Median	0.85296	0.85796	NaN	1	1	Median	0.88587	0.99295	NaN	1	0	Median	433870000	260400000	173470000	0	0	0	107120000	56784000	50338000	217410000	137070000	80336000	109340000	66544000	42793000	29815	2517	28209	185047;185048;185049	250042;250043;250044;250045	250044			4	
LEGVLAEVAQHYQDTLIR	0	Unmodified	2054.0797	0.07965389	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.41		9	6						2	3	5	5	4	93.393	91.98	2;3	5.63E-34	42737	160513_QHF_FH_JSI9Kac_6	172.66	146.51			0.83645	0.85698	12.187	15	6	Median	0.98487	0.85698	7.2257	3	0	Median	0.71632	0.87505	19.722	4	3	Median	0.96838	0.92538	8.6612	4	3	Median	0.77547	0.82016	9.6912	4	0	Median	4740400000	2391300000	2349100000	557380000	232210000	325170000	666580000	304160000	362430000	1850300000	905780000	944490000	1666200000	949170000	717010000	29816	1600	28210	185050;185051;185052;185053;185054;185055;185056;185057;185058;185059;185060;185061;185062;185063;185064;185065;185066	250046;250047;250048;250049;250050;250051;250052;250053;250054;250055;250056;250057;250058;250059;250060;250061;250062;250063;250064;250065;250066;250067;250068;250069;250070;250071;250072;250073	250067			28	
LEGVLVNHNEPR	0	Unmodified	1375.7208	0.72081203	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	27.743	27.72	3	0.0096778	23262	160511_QHF_FH_JSI12i_3	43.761	35.657			1.9961	1.8971	73.11	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4401	3.1813	NaN	1	0	Median	1.1583	1.1313	NaN	1	0	Median	200830000	73421000	127410000	0	0	0	0	0	0	72495000	16072000	56423000	128340000	57349000	70986000	29817	3306	28211	185067;185068	250074	250074			0	
LEGWEVFAK	1	Unmodified	1077.5495	0.54949617	3381	Q86Y39	NDUFA11	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.292	71.007	2	0.013487	61147	160511_QHF_FH_JSI12i_2	46.447	29.082			0.70491	0.76254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70491	0.76254	NaN	1	0	Median	44310000	21099000	23212000	0	0	0	0	0	0	0	0	0	44310000	21099000	23212000	29818	3381	28212	185069	250075	250075			1	
LEGWLSLPVR	0	Unmodified	1168.6604	0.66044361	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		84.361	83.769	2	0.0052211	73714	160511_QHF_FH_JSI11i_2	63.816	53.106			1.02	1.0796	8.0219	3	3	Plateau	1.0943	0.96338	NaN	1	1	Median	0.74589	0.92543	NaN	1	1	Median	1.02	1.0802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100210000	53917000	46294000	32474000	17305000	15169000	29641000	16252000	13388000	38096000	20359000	17737000	0	0	0	29819	475	28213	185070;185071;185072	250076;250077;250078	250077			3	
LEGWLVSIK	1	Unmodified	1043.6015	0.60153174	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	76.334	75.461	2	0.057493	65275	160511_QHF_FH_JSI12i_2	34.186	16.277			1.2085	1.2896	16.529	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90074	1.0635	NaN	1	0	Median	1.4792	1.4778	NaN	1	0	Median	1.2085	1.2896	NaN	1	0	Median	62202000	31798000	30404000	0	0	0	17129000	8839000	8290100	28800000	15858000	12943000	16273000	7101500	9171100	29820	4816	28214	185073;185074;185075	250079;250080	250079			2	
LEGWQGNPPPIYVGSSPTLK	1	Unmodified	2139.1001	0.10005498	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	81.143	80.307	3	0.00043985	73233	160511_QHF_FH_JSI12i_1	51.526	42.48			0.88783	0.92487	4.5006	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88783	0.92487	4.5006	2	2	Median	42470000	24977000	17493000	0	0	0	0	0	0	0	0	0	42470000	24977000	17493000	29821	3301	28215	185076;185077	250081;250082	250082			2	
LEHAYKPVQFEGSLGK	2	Unmodified	1801.9363	0.93628412	3305	Q86TB9	PATL1	Protein PAT1 homolog 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			44.224	42.678	4	0.027971	35512	160511_QHF_FH_JSI10i_3	27.983	19.641			1.1567	1.336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1567	1.336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41697000	22486000	19211000	0	0	0	41697000	22486000	19211000	0	0	0	0	0	0	29822	3305	28216	185078	250083	250083			1	
LEHDVNIQFPDK	1	Unmodified	1453.7201	0.72014333	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		10								2	1	4	3	49.3	48.365	2;3	0.00025497	41698	160511_QHF_FH_JSI11i_2	92.247	62.58			0.90494	0.93157	35.387	10	8	Median	1.4936	1.2961	41.297	2	1	Median	0.59117	0.72601	NaN	1	0	Median	0.80637	0.81367	37.008	4	4	Median	0.81715	0.89663	33.698	3	3	Median	769800000	401920000	367880000	112490000	50916000	61575000	72132000	45381000	26752000	352500000	181750000	170750000	232680000	123870000	108800000	29823	2147	28217	185079;185080;185081;185082;185083;185084;185085;185086;185087;185088	250084;250085;250086;250087;250088;250089;250090;250091;250092;250093	250093			10	
LEHEISHLK	1	Unmodified	1104.5928	0.59275797	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	13.838	13.813	2;3	3.4451E-05	10492	160511_QHF_FH_JSI12i_3	79.148	40.581			1.1853	1.1865	24.69	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9612	0.94775	NaN	1	0	Median	1.3506	1.3569	18.986	2	0	Median	277320000	104470000	172850000	0	0	0	0	0	0	55992000	25495000	30497000	221330000	78973000	142360000	29824	1016	28218	185089;185090;185091	250094;250095;250096;250097	250097			4	
LEHENPSDPQTPLVFK	1	Unmodified	1849.921	0.92102798	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.862	49.881	3	0.0001057	43933	160511_QHF_FH_JSI10i_2	68.413	63.611			0.90914	1.0183	31.97	4	3	Median	0.82245	0.70386	NaN	1	1	Median	0.84467	1.034	NaN	1	0	Median	0.97852	1.0028	NaN	1	1	Median	1.4212	1.5384	NaN	1	1	Median	229000000	106980000	122020000	37837000	19056000	18781000	51624000	24049000	27575000	96428000	47332000	49096000	43111000	16539000	26572000	29825	2900	28219	185092;185093;185094;185095	250098;250099;250100;250101;250102	250102			5	
LEHEYIQNFK	1	Unmodified	1319.651	0.65100113	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.84		12	7						6	6	4	7	8	37.544	34.419	2;3	3.7525E-08	29278	160511_QHF_FH_JSI11i_2	103.7	97.467			0.9952	0.99817	34.332	21	12	Median	1.0642	0.92262	50.104	3	1	Median	0.80344	1.0832	9.4086	3	1	Plateau	1.0703	1.0904	39.546	7	5	Median	0.92002	1.03	31.073	8	5	Median	3475300000	1643400000	1831900000	546580000	240010000	306570000	716000000	368610000	347390000	1478300000	654450000	823820000	734430000	380350000	354080000	29826	2698	28220	185096;185097;185098;185099;185100;185101;185102;185103;185104;185105;185106;185107;185108;185109;185110;185111;185112;185113;185114;185115;185116;185117;185118;185119;185120	250103;250104;250105;250106;250107;250108;250109;250110;250111;250112;250113;250114;250115;250116;250117;250118;250119;250120;250121;250122;250123;250124;250125;250126;250127;250128;250129;250130;250131;250132;250133	250121			29	
LEHFVSILLK	1	Unmodified	1197.7121	0.71214483	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	71.944	71.023	3	0.0015961	59808	160511_QHF_FH_JSI10i_3	61.353	44.721			1.2259	1.0232	94.851	7	7	Median	0.97592	0.82443	30.551	2	2	Median	0.7616	0.89429	82.477	2	2	Median	3.0275	2.9173	NaN	1	1	Median	0.89431	0.96317	184.31	2	2	Median	78449000	40964000	37485000	20221000	9894900	10326000	18447000	9897000	8550400	8257000	1787400	6469600	31524000	19385000	12139000	29827	3428	28221	185121;185122;185123;185124;185125;185126;185127	250134;250135;250136;250137;250138;250139;250140;250141	250137			8	
LEHLEKQVR	1	Acetyl (K)	1192.6564	0.65642086	3815	Q8WY22	BRI3BP	BRI3-binding protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15	0								2			1		1	32.303	22.948	3	0.0033863	12521	160513_QHF_FH_JSI10Kac_5	54.608	21.383			0.87423	1.0124	21.189	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98078	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77925	0.87155	NaN	1	0	Median	12675000	6586700	6088500	0	0	0	7665600	4137400	3528200	0	0	0	5009500	2449300	2560200	29828	3815	28222	185128;185129	250142;250143;250144;250145	250144	2945		4	
LEHTAQTYSELQGER	0	Unmodified	1760.8329	0.83294126	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	3.83		6	3					1		2	1	4	3	28.106	26.293	2;3	3.0566E-06	21746	160511_QHF_FH_JSI12i_3	71.531	53.787			0.94863	1.0384	28.781	8	2	Median	0.8972	0.78823	64.482	2	1	Median	0.86223	1.0488	NaN	1	0	Median	1.0488	1.0474	9.6294	3	0	Median	0.85994	0.90926	1.6349	2	1	Median	298450000	144630000	153820000	51136000	26448000	24688000	54984000	25058000	29926000	122580000	60331000	62254000	69745000	32789000	36956000	29829	641	28223	185130;185131;185132;185133;185134;185135;185136;185137;185138;185139	250146;250147;250148;250149;250150;250151;250152;250153;250154;250155;250156;250157;250158;250159;250160	250160			15	
LEHVVEEEK	1	Unmodified	1110.5557	0.55570376	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	13.029	12.301	2	0.013636	10017	160511_QHF_FH_JSI9i_2	56.209	39.966			0.76085	0.76786	74.472	2	1	Median	0.50769	0.45351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1402	1.3001	NaN	1	0	Median	89590000	48027000	41563000	36473000	20443000	16030000	0	0	0	0	0	0	53117000	27584000	25533000	29830	1505	28224	185140;185141	250161;250162	250162			1	
LEHWYITGLR	0	Unmodified	1286.6772	0.6771563	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	16	0									3	1	1		1	67.681	58.863	3	0.0082704	30909	160513_QHF_FH_JSI12Kac_6	38.634	23.257			1.1178	1.1945	24.402	3	0	Plateau	1.1178	0.95788	NaN	1	0	Median	1.2409	1.4708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87537	0.97005	NaN	1	0	Median	29181000	13102000	16079000	7512700	3491700	4021000	11325000	4178000	7147300	0	0	0	10343000	5431900	4911100	29831	3196	28225	185142;185143;185144	250163;250164	250164			2	
LEICNLTPDALK	1	Unmodified	1385.7225	0.72245152	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		75.16	74.838	2	0.00020313	68108	160511_QHF_FH_JSI11i_1	97.813	58.191			0.49343	0.47068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49343	0.47068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38529000	25661000	12868000	0	0	0	0	0	0	38529000	25661000	12868000	0	0	0	29832	871	28226	185145	250165	250165			1	
LEICNLTPDTLTSDTYKK	2	Unmodified	2111.0456	0.045636149	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	72.425	71.691	3	2.1867E-05	62237	160511_QHF_FH_JSI12i_3	77.505	69.883			1.1596	1.2683	34.547	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80163	0.81823	NaN	1	0	Median	1.3382	1.4325	17.212	2	0	Median	146300000	73042000	73261000	0	0	0	0	0	0	62130000	35879000	26251000	84173000	37164000	47010000	29833	1122	28227	185146;185147;185148	250166;250167;250168	250167			3	
LEIEPEWAYGK	1	Unmodified	1333.6554	0.65541781	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	2	2									2		2	70.447	69.712	2	0.00077561	63238	160511_QHF_FH_JSI10i_1	80.688	24.125			1.2908	1.4176	34.555	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1095	1.3109	45.471	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3903	1.45	37.588	2	1	Median	86266000	43956000	42310000	0	0	0	53533000	29146000	24387000	0	0	0	32734000	14811000	17923000	29834	2158	28228	185149;185150;185151;185152	250169;250170;250171	250171			3	
LEIFFGK	1	Unmodified	852.47454	0.47454032	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.347	69.425	2	0.017885	60607	160511_QHF_FH_JSI11i_2	60.788	31.45			1.072	1.0642	29.048	3	2	Median	1.8485	1.6134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.072	1.0642	NaN	1	0	Median	0.83901	0.92238	NaN	1	1	Median	63358000	30059000	33299000	12362000	5914500	6447900	0	0	0	29221000	11894000	17327000	21775000	12250000	9524700	29835	2099	28229	185153;185154;185155;185156	250172;250173;250174;250175;250176	250175			5	
LEIFHPFFK	1	Unmodified	1176.6332	0.63316622	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							3	3	1	1	80.139	79.415	3	0.00018751	70784	160511_QHF_FH_JSI11i_3	68.016	60.888			1.059	0.99193	23.635	5	1	Median	1.1946	0.99661	NaN	1	1	Median	0.65645	0.77771	34.407	2	0	Median	1.059	0.99137	NaN	1	0	Median	1.1178	1.1141	NaN	1	0	Median	165100000	87885000	77217000	16113000	5998900	10114000	49681000	32249000	17432000	37990000	17353000	20637000	61318000	32285000	29033000	29836	4974	28230	185157;185158;185159;185160;185161;185162;185163;185164	250177;250178;250179;250180;250181;250182;250183;250184;250185;250186;250187;250188;250189;250190;250191;250192;250193;250194;250195	250180			19	
LEIFPDVLVHR	0	Unmodified	1336.7503	0.75032125	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	83.401	83.306	3	4.7927E-05	74384	160511_QHF_FH_JSI11i_3	80.979	72.025			0.93948	0.88571	3.0122	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92333	0.86705	NaN	1	0	Median	0.95591	0.90478	NaN	1	0	Median	67074000	28175000	38899000	0	0	0	0	0	0	35750000	14430000	21320000	31324000	13744000	17579000	29837	719	28231	185165;185166	250196;250197;250198;250199	250197			4	
LEILQIHTK	1	Unmodified	1093.6495	0.64954457	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.66		8	6					3	9	7	6	8	5	55.331	50.47	2;3	3.5124E-07	44357	160511_QHF_FH_JSI10i_2	132.01	111.31			0.8441	0.8696	28.057	26	6	Median	1.0414	0.87876	23.502	7	2	Median	0.72466	0.8775	41.845	6	2	Median	0.8441	0.83748	23.591	8	2	Median	0.81031	0.90588	21.629	5	0	Median	6870000000	3556300000	3313800000	721280000	354610000	366660000	1010700000	563440000	447230000	2733500000	1462000000	1271500000	2404600000	1176200000	1228400000	29838	1846	28232	185167;185168;185169;185170;185171;185172;185173;185174;185175;185176;185177;185178;185179;185180;185181;185182;185183;185184;185185;185186;185187;185188;185189;185190;185191;185192	250200;250201;250202;250203;250204;250205;250206;250207;250208;250209;250210;250211;250212;250213;250214;250215;250216;250217;250218;250219;250220;250221;250222;250223;250224;250225;250226;250227;250228;250229;250230;250231;250232;250233;250234	250221			34	
LEILQIHTKNMK	2	Acetyl (K)	1508.8385	0.83848433	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.851	61.387	3	0.003565	33299	160513_QHF_FH_JSI11Kac_6	60.364	46.684			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38364000	38364000	0	0	0	0	0	0	0	38364000	38364000	0	0	0	0	29839	1846	28233	185193	250235	250235	1858		1	
LEILQQQLQVANEAR	0	Unmodified	1751.953	0.95299681	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	70.826	70.147	2	9.7122E-40	60434	160511_QHF_FH_JSI12i_2	198.49	183.8			0.90386	0.9493	24.208	7	0	Median	1.0484	0.90737	NaN	1	0	Median	0.81903	0.95678	1.1101	2	0	Median	1.0156	0.98841	19.68	2	0	Median	0.6916	0.73819	45.822	2	0	Median	241850000	120090000	121760000	34128000	13484000	20644000	67249000	39643000	27606000	82476000	39432000	43044000	58000000	27529000	30471000	29840	2587	28234	185194;185195;185196;185197;185198;185199;185200;185201	250236;250237;250238;250239;250240;250241;250242;250243;250244;250245;250246	250238			11	
LEIMEFVNFLK	1	Unmodified	1381.7316	0.73155964	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	7		2							2		1	1	2	99.92	96.061	2	6.2748E-18	90138	160511_QHF_FH_JSI11i_2	157.96	98.975			0.82124	0.88458	15.33	4	1	Median	NaN	NaN	NaN	0	0	Median	0.64022	0.73487	NaN	1	0	Median	0.96109	0.96573	NaN	1	0	Median	0.82124	0.9104	16.483	2	1	Median	385920000	196940000	188990000	0	0	0	111140000	59593000	51545000	143030000	69640000	73391000	131760000	67704000	64051000	29841	5640	28235	185202;185203;185204;185205	250247;250248;250249;250250	250247			4	
LEINCQDPSIK	1	Unmodified	1315.6442	0.6442012	3577	Q8N9N5	BANP	Protein BANP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		15.296	14.634	3	0.059771	11846	160511_QHF_FH_JSI10i_3	15.202	0.94416			0.91449	0.81596	4.8471	3	0	Plateau	0.98077	0.78539	NaN	1	0	Median	0.68299	0.77484	NaN	1	0	Median	0.91449	0.84772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	580120000	232640000	347480000	213740000	62309000	151430000	146220000	76462000	69755000	220170000	93873000	126300000	0	0	0	29842	3577	28236	185206;185207;185208	250251	250251			1	
LEINVLKK	2	Unmodified	955.60662	0.60661712	1680	P49761	CLK3	Dual specificity protein kinase CLK3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	44.612	44.374	3	0.012704	37921	160511_QHF_FH_JSI12i_3	40.002	24.851			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29843	1680	28237	185209	250252	250252			1	
LEISTSSLK	1	Unmodified	976.54408	0.54407645	3142	Q6ULP2	AFTPH	Aftiphilin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			12.184	11.627	3	0.021428	9459	160511_QHF_FH_JSI10i_2	30.564	8.5602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29844	3142	28238	185210	250253	250253			1	
LEISVDQYPTHTSNR	0	Unmodified	1758.8537	0.8536767	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	46.185	45.632	3	2.2582E-05	40307	160511_QHF_FH_JSI11i_3	106.58	98.986			0.74707	0.68296	22.957	5	0	Median	0.74707	0.64573	NaN	1	0	Median	0.55212	0.68296	NaN	1	0	Median	0.89397	0.85596	34.82	2	0	Median	0.89418	0.89513	NaN	1	0	Median	291780000	138000000	153790000	34155000	16624000	17531000	47718000	32678000	15040000	119600000	45405000	74199000	90308000	43292000	47016000	29845	3146	28239	185211;185212;185213;185214;185215	250254;250255;250256;250257	250254			2	
LEITMLSQGVSMLYSFFMPAAK	1	Unmodified	2463.2252	0.22519719	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.62		1	1						7	3	2	2	2	103.05	96.58	2;3	4.7025E-259	54055	160513_QHF_FH_JSI9Kac_6	404.09	384.35			1.1357	1.1582	31.925	9	1	Median	1.362	1.1575	37.612	3	1	Median	0.88638	1.0585	12.737	2	0	Median	1.4244	1.3978	53.986	2	0	Median	1.2115	1.2795	8.5392	2	0	Median	4466700000	2141600000	2325200000	1628200000	790450000	837760000	2351400000	1108900000	1242500000	41553000	20751000	20802000	445570000	221490000	224080000	29846	1208	28240	185216;185217;185218;185219;185220;185221;185222;185223;185224	250258;250259;250260;250261;250262;250263;250264;250265;250266;250267;250268;250269;250270;250271;250272;250273;250274;250275	250264			18	
LEITMLSQGVSMLYSFFMPAAK	1	Oxidation (M)	2479.2201	0.22011182	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	5	2	3	3	101.31	92.541	2;3	1.155E-57	53519	160513_QHF_FH_JSI9Kac_6	247.29	218.51			1.0381	1.0281	11.303	12	3	Median	1.0653	0.9042	7.7832	5	2	Median	0.9744	1.1327	12.836	2	0	Median	1.1237	1.0853	2.1135	2	1	Median	0.96801	1.0548	2.6509	3	0	Median	1285200000	655680000	629550000	641510000	296880000	344630000	418440000	221830000	196600000	86975000	59817000	27158000	138310000	77152000	61163000	29847	1208	28240	185225;185226;185227;185228;185229;185230;185231;185232;185233;185234;185235;185236;185237	250276;250277;250278;250279;250280;250281;250282;250283;250284;250285;250286;250287;250288;250289;250290;250291;250292;250293;250294	250287		835;836;837	19	
LEITMLSQGVSMLYSFFMPAAK	1	2 Oxidation (M)	2495.215	0.21502644	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	2	0				By MS/MS	16	0									4				4	99.628	90.186	3	1.613E-05	49283	160513_QHF_FH_JSI12Kac_6	114.53	89.319			0.81916	0.86413	36.942	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81916	0.86413	36.942	4	4	Median	171570000	92686000	78886000	0	0	0	0	0	0	0	0	0	171570000	92686000	78886000	29848	1208	28240	185238;185239;185240;185241	250295;250296;250297;250298	250296		835;836;837	4	
LEIYVVTAEGLRPVK	1	Unmodified	1685.9716	0.97160699	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	1	3	3	79.248	75.815	3	0.00074786	67713	160511_QHF_FH_JSI12i_2	57.288	46.501			1.0833	1.0595	22.966	8	1	Median	1.0663	0.9136	NaN	1	0	Median	1.1007	1.366	NaN	1	1	Median	0.91807	0.93988	29.599	3	0	Median	1.2026	1.1943	21.397	3	0	Median	305830000	130450000	175370000	62383000	13117000	49266000	29668000	14868000	14800000	108180000	58970000	49210000	105590000	43495000	62099000	29849	2734	28241	185242;185243;185244;185245;185246;185247;185248;185249;185250	250299;250300;250301;250302;250303;250304;250305	250300			6	
LEKAYEAR	1	Acetyl (K)	1020.524	0.52400971	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		29.494	20.543	2	0.021849	13327	160513_QHF_FH_JSI11Kac_4	61.161	29.227			0.54492	0.58694	46.263	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68254	0.81408	NaN	1	0	Median	0.43504	0.42318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19606000	12278000	7328600	0	0	0	9379700	5283000	4096800	10226000	6994600	3231800	0	0	0	29850	1579	28242	185251;185252	250306;250307	250307	1595		2	
LEKFSISAHGK	2	Acetyl (K)	1257.6717	0.67173657	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		49.382	39.68	3	0.0020865	21547	160513_QHF_FH_JSI11Kac_6	56.951	34.477			0.40576	0.39775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40576	0.39775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16270000	12501000	3768500	0	0	0	0	0	0	16270000	12501000	3768500	0	0	0	29851	3634	28243	185253	250308;250309	250308	2896		2	
LEKGDYTIR	1	Acetyl (K)	1135.5873	0.58733824	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	49.875	39.431	2	0.025501	22752	160513_QHF_FH_JSI12Kac_4	49.536	15.364			0.52045	0.55469	9.3813	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.53118	0.62999	NaN	1	0	Median	0.53611	0.52462	NaN	1	0	Median	0.51543	0.55469	NaN	1	0	Median	42037000	24675000	17362000	0	0	0	14413000	7956800	6456300	12048000	7917000	4131400	15575000	8800700	6774400	29852	1316	28244	185254;185255;185256	250310;250311	250311	1243		2	
LEKHELIEFR	1	Acetyl (K)	1354.7245	0.72450043	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.22	56.58	2	0.0025139	30670	160513_QHF_FH_JSI11Kac_6	81.017	35.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29853	2155	28245	185257	250312	250312	2261		1	
LEKIHHSGAK	2	Acetyl (K)	1160.6302	0.63020611	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1			By MS/MS		16	0									4			4		11.84	2.5142	3;4	0.00022371	4243	160513_QHF_FH_JSI11Kac_6	77.062	32.745			0.24667	0.2367	26.929	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24667	0.2367	26.929	3	0	Plateau	NaN	NaN	NaN	0	0	Median	21075000	16964000	4111400	0	0	0	0	0	0	21075000	16964000	4111400	0	0	0	29854	4321	28246	185258;185259;185260;185261	250313;250314;250315;250316	250316	3130		4	
LEKPETQSSPITVQSSK	2	Unmodified	1857.9684	0.96837211	4005	Q96CB8	INTS12	Integrator complex subunit 12	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.116	32.116	3	0.00027858	27905	160511_QHF_FH_JSI11i_3	62.94	52.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29855	4005	28247	185262	250317	250317			1	
LELAMLSFFEQFRK	1	Unmodified	1757.9175	0.91746293	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	97.401	90.675	3	5.2178E-17	47476	160513_QHF_FH_JSI12Kac_6	134.06	108.19			1.2016	1.2234	13.916	5	1	Median	1.2016	1.0356	NaN	1	0	Median	1.0289	1.2234	NaN	1	0	Median	1.5174	1.4243	7.5424	2	1	Median	1.1127	1.1975	NaN	1	0	Median	684230000	341170000	343050000	111710000	55891000	55823000	214320000	123870000	90447000	216180000	100280000	115900000	142010000	61129000	80885000	29856	5327	28248	185263;185264;185265;185266;185267	250318;250319;250320;250321;250322;250323;250324;250325;250326	250323			9	
LELAQYR	0	Unmodified	891.48142	0.48141661	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	36.719	35.818	2	0.0098491	30561	160511_QHF_FH_JSI11i_2	77.374	24.738			1.0045	1.0164	15.08	6	1	Median	1.0426	0.84943	16.412	2	1	Median	0.87841	1.0535	NaN	1	0	Median	1.0618	1.0854	NaN	1	0	Median	1.0025	1.0704	12.383	2	0	Median	8865200000	4086200000	4779000000	2118900000	760570000	1358300000	1649900000	919460000	730420000	2811000000	1236300000	1574800000	2285400000	1169900000	1115500000	29857	1263	28249	185268;185269;185270;185271;185272;185273	250327;250328;250329;250330;250331;250332;250333	250330			7	
LELASNHFLYLPR	0	Unmodified	1571.846	0.84601255	2463	Q13641	TPBG	Trophoblast glycoprotein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			25.755	17.932	5	0.060815	10646	160513_QHF_FH_JSI10Kac_6	4.8013	0			0.26235	0.31251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26235	0.31251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8225000	7944200	280790	0	0	0	8225000	7944200	280790	0	0	0	0	0	0	29858	2463	28250	185274	250334	250334			1	
LELEQTYQAK	1	Unmodified	1221.6241	0.62411768	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.694	38.201	2	0.00019717	34302	160511_QHF_FH_JSI11i_1	93.178	77.596			0.85197	0.94124	20.818	2	2	Median	NaN	NaN	NaN	0	0	Median	0.93982	1.0905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77233	0.8124	NaN	1	1	Median	382210000	218180000	164030000	0	0	0	153580000	86328000	67255000	0	0	0	228620000	131850000	96776000	29859	2207	28251	185275;185276;185277	250335;250336;250337	250335			3	
LELFLPEEYPMAAPK	1	Unmodified	1746.8902	0.89024513	1937	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.79	0.694	7	9	3							5	5	5	4	99.294	99.161	2;3	1.5591E-14	87037	160511_QHF_FH_JSI11i_2	156.71	123.3			0.99685	0.98034	16.404	18	4	Median	1.1247	0.91687	6.5717	5	2	Median	0.85304	1.2342	14.533	4	0	Linear	0.95634	0.95167	23.667	5	1	Median	1.0068	1.0808	8.1226	4	1	Median	2106600000	1095800000	1010800000	282560000	136810000	145750000	619760000	360650000	259120000	702420000	346750000	355670000	501880000	251600000	250280000	29860	1937	28252	185278;185279;185280;185281;185282;185283;185284;185285;185286;185287;185288;185289;185290;185291;185292;185293;185294;185295;185296	250338;250339;250340;250341;250342;250343;250344;250345;250346;250347;250348;250349;250350;250351;250352;250353;250354;250355;250356;250357;250358;250359;250360;250361;250362;250363;250364;250365;250366;250367;250368;250369;250370;250371;250372;250373;250374	250367			37	
LELFPDQATQLK	1	Unmodified	1401.7504	0.75038083	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		73.897	73.572	2	0.00097927	66920	160511_QHF_FH_JSI11i_1	77.288	29.35			1.0347	0.97586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0347	0.97586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23837000	9406300	14431000	0	0	0	0	0	0	23837000	9406300	14431000	0	0	0	29861	400	28253	185297	250375	250375			1	
LELLHER	0	Unmodified	908.50797	0.50796571	2822	Q3V6T2	CCDC88A	Girdin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	21.612	21.602	3	0.054222	17626	160511_QHF_FH_JSI12i_3	22.781	0			0.51004	0.52951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51004	0.52951	NaN	1	1	Median	116660000	61925000	54734000	0	0	0	0	0	0	0	0	0	116660000	61925000	54734000	29862	2822	28254	185298	250376	250376			1	
LELLHPIIPEQSTFK	1	Unmodified	1763.9822	0.98217168	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							3	3	4	4	81.656	80.998	2;3	3.9791E-08	72098	160511_QHF_FH_JSI11i_3	115.82	107.25			0.99795	1.0035	15.525	13	5	Median	1.0121	0.84707	23.966	2	0	Median	0.74338	0.77206	9.3268	3	1	Plateau	1.0667	1.0283	3.7187	4	2	Median	1.0106	1.0736	7.9794	4	2	Median	1488100000	752270000	735840000	169880000	79905000	89978000	277400000	172750000	104650000	630490000	299770000	330720000	410340000	199840000	210500000	29863	5548	28255	185299;185300;185301;185302;185303;185304;185305;185306;185307;185308;185309;185310;185311;185312	250377;250378;250379;250380;250381;250382;250383;250384;250385;250386;250387;250388;250389;250390;250391;250392;250393;250394;250395;250396;250397	250378			21	
LELLIDK	1	Unmodified	842.51132	0.51131975	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.049	60.138	2	0.037612	52218	160511_QHF_FH_JSI11i_2	48.561	13.737			0.70479	0.70112	16.483	4	0	Median	0.86139	0.7278	NaN	1	0	Median	0.54333	0.67542	NaN	1	0	Median	0.59803	0.63719	NaN	1	0	Median	0.83061	0.92702	NaN	1	0	Median	111590000	63800000	47791000	22139000	11702000	10436000	21979000	13956000	8022900	38578000	20577000	18001000	28896000	17565000	11331000	29864	1754	28256	185313;185314;185315;185316	250398;250399	250399			2	
LELNSMQEQLIQAQNTLK	1	Unmodified	2100.0885	0.088504016	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			88.453	88.35	3	0.00076972	80225	160511_QHF_FH_JSI10i_1	58.304	34.017			1.2508	1.4566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2508	1.4566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16997000	9045100	7951500	0	0	0	16997000	9045100	7951500	0	0	0	0	0	0	29865	2627	28257	185317	250400	250400			1	
LELNYCVPMGVQTGDR	0	Unmodified	1850.8655	0.86550371	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.939	74.617	2	0.00066257	67860	160511_QHF_FH_JSI11i_1	66.393	51.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29866	5645	28258	185318	250401	250401			1	
LELPLWLAK	1	Unmodified	1081.6536	0.65356732	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	100.32	100.24	2	0.00069563	89097	160511_QHF_FH_JSI11i_3	75.854	46.516			1.0826	1.0521	17.401	6	0	Median	1.2568	1.1029	NaN	1	0	Median	0.76582	0.9032	NaN	1	0	Median	0.98696	0.94101	9.1108	2	0	Median	1.2389	1.2897	10.374	2	0	Median	116350000	58356000	57993000	12576000	6658100	5917700	17576000	10293000	7283100	34334000	17658000	16676000	51864000	23747000	28117000	29867	4388	28259	185319;185320;185321;185322;185323;185324	250402;250403;250404;250405;250406;250407;250408;250409;250410;250411;250412;250413	250403			12	
LELQGPR	0	Unmodified	811.4552	0.45520186	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.09	1	3					3	5		2	3	4	3	31.96	26.314	2	0.00218	16386	160513_QHF_FH_JSI11Kac_4	84.359	43.056			1.0633	1.0292	67.29	9	5	Median	1.0633	0.90135	NaN	1	1	Median	1.7629	2.1175	103.22	3	2	Median	1.0697	1.0292	30.15	3	1	Median	0.88738	0.97781	23.399	2	1	Median	9461800000	2655800000	6805900000	17479000	7741400	9737300	5440500000	1037600000	4403000000	2422100000	1049300000	1372800000	1581600000	561180000	1020400000	29868	1154	28260	185325;185326;185327;185328;185329;185330;185331;185332;185333;185334;185335;185336	250414;250415;250416;250417;250418;250419;250420;250421;250422;250423;250424	250419			11	
LELQGVK	1	Unmodified	785.4647	0.46470391	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	36.043	31.437	2	0.032748	27582	160511_QHF_FH_JSI9i_1	50.966	7.9657			0.96361	1.1499	33.356	7	0	Median	0.66201	0.55036	NaN	1	0	Median	0.76202	0.90031	34.608	2	0	Median	1.0921	1.0652	19.854	2	0	Median	1.2215	1.2767	8.7402	2	0	Median	542130000	279880000	262250000	77199000	35862000	41337000	190060000	115680000	74385000	153440000	69810000	83630000	121430000	58534000	62896000	29869	4850	28261	185337;185338;185339;185340;185341;185342;185343	250425;250426;250427;250428	250427			4	
LELSDNIISGGLEVLAEK	1	Unmodified	1899.0201	0.020073325	4419	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	101.78	101.64	2	3.0239E-12	89405	160511_QHF_FH_JSI11i_2	195.6	155.98			0.94949	0.9935	30.082	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0413	1.0521	NaN	1	0	Median	0.68958	0.72461	29.716	2	0	Median	567720000	317540000	250180000	0	0	0	0	0	0	250160000	132880000	117280000	317570000	184660000	132900000	29870	4419	28262	185344;185345;185346	250429;250430;250431;250432;250433	250432			4	
LELSVHLQPITR	0	Unmodified	1404.8089	0.80889876	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	67.715	67.137	2;3	2.9842E-05	58042	160511_QHF_FH_JSI12i_3	83.358	74.845			0.88645	0.9931	8.327	5	0	Median	NaN	NaN	NaN	0	0	Median	0.86397	1.0192	3.6671	2	0	Median	1.0917	1.0311	NaN	1	0	Median	0.89024	0.89985	8.0749	2	0	Median	331990000	172820000	159170000	0	0	0	43433000	22887000	20546000	76160000	38372000	37788000	212390000	111560000	100840000	29871	552	28263	185347;185348;185349;185350;185351	250434;250435;250436;250437;250438;250439	250438			5	
LEMDGHLNR	0	Unmodified	1083.5131	0.51312744	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.226	23.208	2	0.052177	19125	160511_QHF_FH_JSI12i_3	43.808	27.664			0.9643	0.99831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9643	0.99831	NaN	1	1	Median	22999000	10801000	12197000	0	0	0	0	0	0	0	0	0	22999000	10801000	12197000	29872	4374	28264	185352	250440	250440			1	
LEMEGITVK	1	Unmodified	1018.5369	0.53688258	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	54.598	53.832	2	0.01075	48956	160511_QHF_FH_JSI12i_1	58.981	31.456			0.49792	0.50465	67.157	6	6	Median	0.46498	0.39245	116.63	2	2	Median	0.41079	0.49955	90.102	2	2	Median	0.53113	0.52006	NaN	1	1	Median	0.46679	0.48969	NaN	1	1	Median	1120900000	846640000	274280000	349960000	269560000	80406000	355380000	268570000	86804000	255080000	186950000	68126000	160500000	121560000	38943000	29873	3216	28265	185353;185354;185355;185356;185357;185358	250441;250442;250443;250444;250445;250446	250442			6	
LEMEMEAAR	0	Unmodified	1078.4787	0.47871577	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	2	3	3	37.559	36.85	2	0.0020035	33418	160511_QHF_FH_JSI12i_1	67.993	57.578			1.0937	1.1146	7.2868	6	3	Median	1.368	1.098	NaN	1	0	Median	1.0168	1.2097	NaN	1	1	Median	1.1793	1.1645	4.0614	2	1	Median	0.96693	1.0402	6.8216	2	1	Median	2043300000	1033700000	1009700000	256610000	108490000	148110000	430300000	232860000	197440000	761960000	366860000	395110000	594470000	325470000	269000000	29874	2644	28266	185359;185360;185361;185362;185363;185364;185365;185366;185367	250447;250448;250449;250450;250451;250452;250453;250454;250455;250456	250452			10	
LEMIAMENPADLKK	2	Unmodified	1601.8157	0.81569997	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	87.11	86.661	3	0.036846	78622	160511_QHF_FH_JSI10i_1	18.413	5.2759			0.82892	0.81431	9.995	4	0	Median	0.93392	0.79165	NaN	1	0	Median	0.83749	0.97979	NaN	1	0	Median	0.80925	0.7955	NaN	1	0	Median	0.82044	0.83357	NaN	1	0	Median	136150000	59598000	76551000	29554000	11625000	17929000	36046000	15788000	20258000	44988000	19727000	25261000	25560000	12458000	13103000	29875	2227	28267	185368;185369;185370;185371	250457;250458	250457			2	
LEMYNILK	1	Unmodified	1022.5471	0.54705333	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.71	2	4	4				1	3		3	5	3	3	70.876	67.219	2	0.00043207	58156	160511_QHF_FH_JSI12i_2	108.46	70.902			0.90862	1.0097	22.405	14	4	Median	1.2431	1.0156	19.409	3	2	Median	0.86332	1.0373	25.169	5	1	Median	1.0645	1.1125	17.777	3	0	Plateau	0.75988	0.83896	23.217	3	1	Median	4232200000	2205000000	2027200000	804260000	327590000	476670000	1253600000	662110000	591510000	1227000000	662430000	564520000	947380000	552850000	394530000	29876	1282	28268	185372;185373;185374;185375;185376;185377;185378;185379;185380;185381;185382;185383;185384;185385	250459;250460;250461;250462;250463;250464;250465;250466;250467;250468;250469;250470;250471;250472;250473;250474;250475;250476;250477;250478;250479;250480;250481	250461			23	
LENAGGDLK	1	Unmodified	915.46616	0.46616048	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	1	3	3	14.585	14.196	2	0.00040438	11750	160511_QHF_FH_JSI10i_1	81.338	34.271			1.426	1.2182	63.103	5	4	Median	1.4722	1.2182	NaN	1	1	Median	0.55823	0.67461	NaN	1	0	Median	0.74123	0.71432	103.18	2	2	Median	1.426	1.4796	NaN	1	1	Median	2754600000	1477400000	1277200000	547820000	262760000	285070000	634760000	403040000	231720000	1074100000	574220000	499840000	497980000	237390000	260590000	29877	1693	28269	185386;185387;185388;185389;185390;185391;185392;185393	250482;250483;250484;250485;250486;250487;250488;250489	250487			8	
LENDGSRK	1	Unmodified	917.45666	0.45665842	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			13.138	12.9	2	0.05202	10625	160511_QHF_FH_JSI10i_1	37.021	6.3024			1.0048	1.1882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0048	1.1882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	230800000	130100000	100700000	0	0	0	230800000	130100000	100700000	0	0	0	0	0	0	29878	3503	28270	185394	250490	250490			1	
LENDGSRKPGVIDK	2	Unmodified	1526.8053	0.80526994	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			14.951	14.106	4	0.013641	11159	160511_QHF_FH_JSI10i_3	45.33	24.867			1.7264	2.0466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7264	2.0466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94638000	38359000	56279000	0	0	0	94638000	38359000	56279000	0	0	0	0	0	0	29879	3503	28271	185395	250491	250491			1	
LENDIAEIMK	1	Unmodified	1174.5904	0.59037471	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	61.86	61.316	2	0.0009423	55843	160511_QHF_FH_JSI12i_1	68.847	26.56			0.9515	0.93758	31.391	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79936	0.75094	NaN	1	1	Median	1.1326	1.1706	NaN	1	0	Median	85814000	41206000	44608000	0	0	0	0	0	0	50758000	23103000	27655000	35056000	18103000	16952000	29880	1360	28272	185396;185397	250492;250493	250493			2	
LENDQIESLR	0	Unmodified	1215.6095	0.60953025	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		38.18	37.431	2	0.00014953	33701	160511_QHF_FH_JSI11i_1	96.342	68.168			0.99384	0.8833	24.529	2	1	Median	1.2853	1.0506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7685	0.74264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	895350000	412020000	483330000	379360000	150440000	228920000	0	0	0	515990000	261580000	254400000	0	0	0	29881	1872	28273	185398;185399	250494;250495;250496	250494			3	
LENFENHKK	2	Unmodified	1157.5829	0.58292157	1083	P15822	HIVEP1	Zinc finger protein 40	yes	yes	0	0	0	1				By MS/MS	15	0								1					1	34.496	25.014	3	0.029871	13812	160513_QHF_FH_JSI12Kac_5	35.511	16.268			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29882	1083	28274	185400	250497	250497			1	
LENGEIETIAR	0	Unmodified	1243.6408	0.64083038	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	41.116	40.605	2	0.0061759	36024	160511_QHF_FH_JSI9i_1	54.066	14.064			1.0152	1.1182	20.008	2	0	Median	NaN	NaN	NaN	0	0	Median	1.09	1.2881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94565	0.97065	NaN	1	0	Median	365260000	180390000	184870000	0	0	0	192110000	97439000	94673000	0	0	0	173140000	82947000	90198000	29883	4877	28275	185401;185402;185403	250498;250499;250500;250501	250501			4	
LENGELEHIRPK	1	Unmodified	1433.7627	0.76267685	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	29.165	28.62	2;3;4	0.00012917	24286	160511_QHF_FH_JSI11i_3	73.848	60.169			1.9141	1.813	45.354	8	3	Linear	1.0146	0.85975	34.519	2	1	Median	0.73887	0.9045	23.425	2	1	Median	1.7235	1.6567	77.896	3	1	Plateau	1.1157	1.1201	NaN	1	0	Median	1212500000	546420000	666100000	138500000	66198000	72306000	151900000	93673000	58223000	729550000	290380000	439170000	192570000	96165000	96408000	29884	2629	28276	185404;185405;185406;185407;185408;185409;185410;185411;185412	250502;250503;250504;250505;250506;250507;250508;250509;250510;250511;250512;250513	250503			12	
LENGGFPYEK	1	Unmodified	1152.5451	0.54513908	4384	Q9BRT3	MIEN1	Migration and invasion enhancer 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.539	37.323	2	0.0080858	33074	160511_QHF_FH_JSI9i_1	60.342	35.42			1.3132	1.0889	NaN	1	1	Median	1.3132	1.0889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88266000	41125000	47141000	88266000	41125000	47141000	0	0	0	0	0	0	0	0	0	29885	4384	28277	185413	250514	250514			1	
LENINGVTDGYLNSLCTVR	0	Unmodified	2137.0474	0.047367483	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	83.902	83.378	2	1.829E-17	76061	160511_QHF_FH_JSI11i_1	183.7	158.84			0.97568	0.92942	30.046	3	1	Median	NaN	NaN	NaN	0	0	Median	0.787	0.89585	NaN	1	0	Median	0.97568	0.92942	NaN	1	1	Median	1.3683	1.5339	NaN	1	0	Median	59966000	32702000	27263000	0	0	0	26296000	15792000	10503000	22138000	12100000	10038000	11532000	4809900	6722300	29886	1085	28278	185414;185415;185416	250515;250516;250517;250518	250515			4	
LENLDSDVVQLR	0	Unmodified	1399.7307	0.73070802	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				62.107	61.02	2	0.00024235	54213	160511_QHF_FH_JSI9i_1	93.096	56.539			1.0261	0.85366	NaN	1	1	Median	1.0261	0.85366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118600000	53868000	64733000	118600000	53868000	64733000	0	0	0	0	0	0	0	0	0	29887	5534	28279	185417	250519	250519			1	
LENLPDTEDQETVDINSVSEGK	1	Unmodified	2431.1238	0.12382271	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	64.758	64.144	2;3	1.6803E-32	58105	160511_QHF_FH_JSI10i_1	211.17	200.97			1.4917	1.5339	8.4209	8	7	Median	2.0432	1.6761	10.57	2	2	Median	1.3572	1.5989	7.8284	2	2	Median	1.4734	1.4318	6.6007	2	2	Median	1.4917	1.5557	4.2185	2	1	Median	583000000	231090000	351910000	136820000	37234000	99586000	117450000	48208000	69239000	168420000	76345000	92074000	160310000	69301000	91013000	29888	4673	28280	185418;185419;185420;185421;185422;185423;185424;185425	250520;250521;250522;250523;250524;250525;250526;250527;250528;250529	250526			10	
LENNDNKPVTNSR	1	Unmodified	1499.7328	0.73283328	3291;4548	Q7Z739;Q9BYJ9	YTHDF3;YTHDF1	YTH domain-containing family protein 3;YTH domain-containing family protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.703	4	7	3							2	4	4	4	7.64	7.3853	2;3	0.0008163	4948	160511_QHF_FH_JSI12i_3	88.441	64.059			0.84951	0.92394	55.32	14	3	Median	1.155	0.99109	0.59958	2	0	Median	1.4386	1.7073	79.098	4	2	Median	0.80765	0.55009	53.713	4	1	Linear	0.7835	0.82648	13.495	4	0	Median	755640000	398750000	356890000	121350000	68885000	52466000	206500000	84859000	121640000	262260000	151540000	110720000	165530000	93468000	72061000	29889	3291;4548	28281	185426;185427;185428;185429;185430;185431;185432;185433;185434;185435;185436;185437;185438;185439	250530;250531;250532;250533;250534;250535;250536;250537;250538;250539;250540;250541;250542;250543;250544	250544			15	
LENNENKPVTNSR	1	Unmodified	1513.7485	0.74848335	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		7.98	7.663	2;3	0.00048637	5627	160511_QHF_FH_JSI10i_2	109.24	65.033			0.79909	0.77004	33.543	3	0	Median	0.99674	0.87821	NaN	1	0	Median	0.37484	0.46519	NaN	1	0	Median	0.79909	0.77004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125270000	63187000	62083000	31150000	14363000	16787000	29666000	18315000	11351000	64453000	30509000	33944000	0	0	0	29890	5654	28282	185440;185441;185442	250545;250546;250547;250548	250548			4	
LENSIIPVHK	1	Unmodified	1148.6554	0.65535823	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			39.97	39.004	3	0.012943	34327	160511_QHF_FH_JSI10i_2	36.684	26.452			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29891	5465	28283	185443	250549	250549			1	
LENTEDIEEVEQHIQTIK	1	Unmodified	2167.0645	0.064457335	5007	Q9NUN5	LMBRD1	Probable lysosomal cobalamin transporter	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.884	73.014	3	3.759E-05	63018	160511_QHF_FH_JSI12i_2	70.414	61.043			0.91248	0.96393	3.9139	4	0	Median	1.0139	0.89446	NaN	1	0	Median	0.79854	0.97268	NaN	1	0	Median	0.98227	0.96395	NaN	1	0	Median	0.84766	0.96392	NaN	1	0	Median	185620000	91483000	94139000	36734000	14752000	21982000	35739000	20233000	15507000	64607000	30301000	34307000	48541000	26197000	22344000	29892	5007	28284	185444;185445;185446;185447	250550;250551;250552;250553;250554;250555	250550			6	
LENVSLSQQLTETQHR	0	Unmodified	1881.9545	0.95445338	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	47.151	46.719	3	1.1259E-05	41299	160511_QHF_FH_JSI11i_3	80.545	63.263			1.0131	0.93919	25.741	3	3	Plateau	1.8057	1.5218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0131	0.92718	NaN	1	1	Median	1.0494	1.0526	NaN	1	1	Median	232210000	101260000	130950000	50347000	17280000	33067000	0	0	0	93066000	43113000	49953000	88800000	40870000	47930000	29893	2269	28285	185448;185449;185450	250556;250557;250558	250556			3	
LENYFEELLK	1	Unmodified	1296.6602	0.66016884	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	95.061	94.622	2	0.030915	81430	160511_QHF_FH_JSI12i_2	39.622	26.585			1.0524	1.0978	1.8702	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1047	1.1124	NaN	1	0	Median	1.0026	1.0833	NaN	1	0	Median	40518000	19540000	20978000	0	0	0	0	0	0	24428000	11131000	13297000	16090000	8408700	7681500	29894	261	28286	185451;185452	250559;250560;250561	250559			2	
LENYPIPEPGPNEVLLR	0	Unmodified	1949.0258	0.025827405	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	3	1	2	83.044	82.593	2	1.9471E-15	75277	160511_QHF_FH_JSI11i_1	158.11	123.73			0.96873	1.0088	13.17	7	2	Median	1.2359	1.0088	NaN	1	0	Median	0.96873	1.1484	19.804	3	1	Plateau	1.0611	1.0422	NaN	1	0	Median	1.0241	1.047	11.869	2	1	Median	639860000	329570000	310290000	102750000	45400000	57348000	234780000	134420000	100360000	120780000	63075000	57710000	181540000	86677000	94866000	29895	2160	28287	185453;185454;185455;185456;185457;185458;185459	250562;250563;250564;250565;250566;250567;250568;250569;250570	250563			9	
LEPHEGLLLR	0	Unmodified	1175.6663	0.66625727	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.45		9	8						9	6	7	6	7	47.909	44.186	2;3	1.4324E-09	38741	160511_QHF_FH_JSI11i_3	134.26	82.473			0.98568	1.0021	19.257	24	1	Median	1.1512	0.97317	14.174	6	1	Median	0.88145	1.0886	31.223	6	0	Plateau	1.0269	1.0202	10.906	6	0	Median	0.93556	0.97797	8.4007	6	0	Median	15222000000	6675900000	8546000000	2553200000	1066700000	1486400000	2849400000	1276600000	1572800000	5411600000	2302100000	3109400000	4407800000	2030400000	2377400000	29896	895	28288	185460;185461;185462;185463;185464;185465;185466;185467;185468;185469;185470;185471;185472;185473;185474;185475;185476;185477;185478;185479;185480;185481;185482;185483;185484;185485	250571;250572;250573;250574;250575;250576;250577;250578;250579;250580;250581;250582;250583;250584;250585;250586;250587;250588;250589;250590;250591;250592;250593;250594;250595;250596;250597;250598;250599;250600;250601;250602;250603;250604;250605;250606;250607;250608;250609;250610;250611;250612;250613;250614;250615;250616;250617;250618;250619;250620;250621	250572			51	
LEPHEGLLLRFPYAA	0	Unmodified	1724.925	0.92499115	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			84.626	84.014	3	0.0085726	74715	160511_QHF_FH_JSI10i_2	34.612	30.951			1.1475	1.4431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1475	1.4431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41242000	23328000	17914000	0	0	0	41242000	23328000	17914000	0	0	0	0	0	0	29897	895	28289	185486	250622;250623	250622			2	
LEPHKPQQIPIDSTVSFGASTR	1	Unmodified	2407.2496	0.24957276	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			57.834	56.293	3;4	3.0826E-06	47081	160511_QHF_FH_JSI10i_3	68.369	60.83			0.74496	0.87005	11.31	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74496	0.87005	11.31	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71526000	48195000	23331000	0	0	0	71526000	48195000	23331000	0	0	0	0	0	0	29898	2333	28290	185487;185488;185489	250624;250625;250626	250624			3	
LEPKPQPPVAEATPR	1	Unmodified	1628.8886	0.88860564	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							1	2	4	2	34.931	34.417	2;3	3.4586E-05	29071	160511_QHF_FH_JSI12i_2	73.887	59.534			1.1483	1.0994	26.306	8	3	Median	1.2901	1.0973	NaN	1	0	Median	1.0564	1.2688	19.996	2	1	Median	1.8557	1.7979	32.783	4	2	Linear	0.81492	0.89237	NaN	1	0	Median	1522100000	640740000	881310000	143110000	57585000	85520000	224630000	119720000	104910000	1091900000	428630000	663310000	62374000	34809000	27565000	29899	5298	28291	185490;185491;185492;185493;185494;185495;185496;185497;185498	250627;250628;250629;250630;250631;250632;250633;250634;250635;250636;250637;250638;250639;250640;250641;250642	250633			16	
LEPLKPLK	2	Acetyl (K)	978.61137	0.61136815	5403	Q9ULL5	PRR12	Proline-rich protein 12	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.696							4	3	1		3	2	3	63.905	53.229	2	0.0048855	29092	160513_QHF_FH_JSI10Kac_4	86.953	33.787			1.0087	1.0835	99.178	8	1	Median	NaN	NaN	NaN	0	0	Median	0.6895	0.82574	177.1	3	1	Median	1.0204	1.0108	28.796	2	0	Median	1.0362	1.1277	4.7511	3	0	Median	792940000	409610000	383330000	0	0	0	320550000	151510000	169040000	222750000	119490000	103260000	249640000	138610000	111030000	29900	5403	28292	185499;185500;185501;185502;185503;185504;185505;185506	250643;250644;250645;250646;250647;250648;250649;250650	250643	3397		8	
LEPLQAYHR	0	Unmodified	1125.5931	0.59309232	4711	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	31.271	30.785	3	0.0010361	26455	160511_QHF_FH_JSI11i_3	56.916	33.562			0.84251	0.81903	24.229	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84251	0.94366	NaN	1	0	Median	0.85386	0.81903	NaN	1	0	Median	0.58595	0.58852	NaN	1	0	Median	268880000	114910000	153970000	0	0	0	22067000	12122000	9945100	168110000	80051000	88056000	78707000	22736000	55971000	29901	4711	28293	185507;185508;185509	250651	250651			1	
LEPLVNDLTLR	0	Unmodified	1281.7293	0.72925145	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			76.766	76.025	2	0.055507	67582	160511_QHF_FH_JSI10i_2	42.395	6.0611			0.31346	0.38926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31346	0.38926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24156000	19336000	4820400	0	0	0	24156000	19336000	4820400	0	0	0	0	0	0	29902	3203	28294	185510	250652	250652			1	
LEPMIVPDLDLK	1	Unmodified	1381.7527	0.75268901	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	93.792	93.428	2	3.8E-05	84995	160511_QHF_FH_JSI11i_1	119.16	84.902			1.0486	1.1396	40.295	4	1	Median	0.74634	0.59739	NaN	1	1	Median	0.85272	0.96553	NaN	1	0	Median	1.499	1.4457	NaN	1	0	Median	1.2895	1.3451	NaN	1	0	Median	101580000	47330000	54254000	11942000	7346100	4595500	30956000	16793000	14163000	29388000	11686000	17702000	29298000	11504000	17793000	29903	5755	28295	185511;185512;185513;185514	250653;250654;250655;250656;250657;250658;250659	250654			7	
LEPNAQAQMYR	0	Unmodified	1319.6292	0.62921983	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								3	1	1	1	32.025	31.277	2	1.3087E-05	27051	160511_QHF_FH_JSI9i_2	107.47	88.194			1.0368	1.0548	27.33	6	2	Median	1.2189	1.0066	33.588	3	2	Median	1.0292	1.2061	NaN	1	0	Median	0.76782	0.7614	NaN	1	0	Median	1.0444	1.1054	NaN	1	0	Median	924500000	453720000	470780000	263010000	127860000	135140000	250850000	127300000	123550000	200900000	101460000	99437000	209750000	97097000	112650000	29904	726	28296	185515;185516;185517;185518;185519;185520	250660;250661;250662;250663;250664;250665;250666	250665			7	
LEPNLGEDDEDK	1	Unmodified	1372.5994	0.59941907	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	34.013	33.306	2	0.00011235	29895	160511_QHF_FH_JSI11i_1	87.568	77.787			0.8323	0.70938	33.949	6	5	Median	0.8323	0.69758	8.0875	2	2	Median	0.57189	0.68129	NaN	1	1	Median	1.0494	0.99521	NaN	1	0	Median	0.6769	0.69951	67.958	2	2	Median	267720000	146930000	120790000	90262000	41059000	49203000	53765000	36972000	16794000	49115000	30270000	18844000	74577000	38631000	35946000	29905	3888	28297	185521;185522;185523;185524;185525;185526	250667;250668;250669;250670;250671;250672;250673	250668			7	
LEPPFRPK	1	Unmodified	982.56	0.56000128	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.876	34.419	3	0.036327	27929	160511_QHF_FH_JSI9i_3	35.295	2.4547			2.4376	1.9847	NaN	1	1	Median	2.4376	1.9847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56697000	16172000	40526000	56697000	16172000	40526000	0	0	0	0	0	0	0	0	0	29906	2232	28298	185527	250674	250674			1	
LEPQIASASEYAHR	0	Unmodified	1570.774	0.77396981	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.97	3	8	7					4	3	4	6	7	8	43.758	40.448	2;3	1.3565E-07	34722	160511_QHF_FH_JSI11i_2	138.21	125.59			0.97156	0.96105	14.353	25	4	Median	1.2137	1.0201	8.8315	4	0	Median	0.79751	0.93961	10.555	6	1	Median	1.0184	0.9651	2.985	7	0	Median	0.89041	0.99011	23.58	8	3	Median	13835000000	6862000000	6972600000	1257600000	597360000	660290000	2107300000	1090400000	1016900000	4385000000	2187000000	2197900000	6084700000	2987300000	3097400000	29907	434	28299	185528;185529;185530;185531;185532;185533;185534;185535;185536;185537;185538;185539;185540;185541;185542;185543;185544;185545;185546;185547;185548;185549;185550;185551;185552	250675;250676;250677;250678;250679;250680;250681;250682;250683;250684;250685;250686;250687;250688;250689;250690;250691;250692;250693;250694;250695;250696;250697;250698;250699;250700;250701;250702;250703;250704;250705;250706;250707	250696			32	
LEPQSMVWLPVLHR	0	Unmodified	1703.9181	0.91813163	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	92.891	92.398	3	4.2053E-05	82188	160511_QHF_FH_JSI11i_3	93.348	86.619			0.98964	0.92944	6.0741	5	0	Median	1.1118	0.91275	NaN	1	0	Median	0.75955	0.90443	3.8577	2	0	Median	1.0955	1.018	NaN	1	0	Median	0.98964	0.99521	NaN	1	0	Median	163380000	81173000	82212000	20564000	10224000	10340000	36870000	20728000	16142000	53598000	24138000	29460000	52353000	26082000	26270000	29908	1003	28300	185553;185554;185555;185556;185557	250708;250709;250710;250711;250712;250713;250714;250715;250716;250717;250718;250719	250709			12	
LEPSTSTDQPVTPEPTSQATR	0	Unmodified	2241.0761	0.076084654	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.216	39.581	2	2.6721E-22	35968	160511_QHF_FH_JSI12i_1	196.95	174.23			1.0911	1.23	18.393	4	0	Linear	1.0308	0.83296	NaN	1	0	Median	0.86168	1.0157	NaN	1	0	Median	1.2939	1.2627	NaN	1	0	Median	1.1549	1.177	NaN	1	0	Median	207850000	105480000	102370000	41962000	20184000	21779000	52576000	29078000	23498000	57955000	27118000	30837000	55358000	29101000	26257000	29909	2557	28301	185558;185559;185560;185561	250720;250721;250722;250723;250724;250725;250726;250727	250724			8	
LEPVIMELER	0	Unmodified	1227.6533	0.65330932	449;2775	O60825;Q16875;P16118;Q16877	PFKFB2;PFKFB3;PFKFB1;PFKFB4	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.259	74.404	2	0.0001836	65241	160511_QHF_FH_JSI11i_2	93.598	64.436			0.75879	0.85542	22.969	4	3	Median	1.5266	1.2896	NaN	1	0	Median	0.68257	0.84789	NaN	1	1	Median	0.76459	0.76618	NaN	1	1	Median	0.75304	0.86302	NaN	1	1	Median	268950000	124690000	144270000	53853000	19426000	34428000	60168000	34106000	26062000	107610000	48347000	59267000	47319000	22807000	24512000	29910	449;2775	28302	185562;185563;185564;185565	250728;250729;250730;250731;250732	250731			5	
LEPVNAASFGK	1	Unmodified	1131.5924	0.59242362	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			47.429	47.003	2	0.024244	42394	160511_QHF_FH_JSI10i_1	48.602	17.915			0.83531	0.97634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83531	0.97634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40957000	21104000	19853000	0	0	0	40957000	21104000	19853000	0	0	0	0	0	0	29911	1213	28303	185566	250733	250733			1	
LEPVPLK	1	Unmodified	794.49019	0.49019038	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.25	0.433	3	1								1	1	1	1	40.088	39.499	2	0.010327	35304	160511_QHF_FH_JSI10i_1	75.311	33.809			1.0903	1.0843	10.73	4	0	Median	1.3279	1.1512	NaN	1	0	Median	0.8516	1.0212	NaN	1	0	Median	1.2652	1.2116	NaN	1	0	Median	0.93968	0.95902	NaN	1	0	Median	254320000	122260000	132060000	37095000	16775000	20319000	78234000	42703000	35532000	72909000	30775000	42135000	66079000	32008000	34070000	29912	2344	28304	185567;185568;185569;185570	250734;250735;250736	250736			3	
LEQAAIVK	1	Unmodified	870.51747	0.51746776	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.164	23.617	2	0.0027636	20228	160511_QHF_FH_JSI9i_1	85.064	37.215			1.0864	1.128	59.321	4	2	Median	3.4699	2.9037	NaN	1	1	Median	0.74084	0.85991	NaN	1	0	Median	0.82525	0.81079	NaN	1	0	Median	1.4303	1.4797	NaN	1	1	Median	397580000	188330000	209250000	78602000	18305000	60298000	103660000	62097000	41562000	119940000	58210000	61727000	95380000	49717000	45663000	29913	2419	28305	185571;185572;185573;185574	250737;250738;250739	250739			3	
LEQANDDAR	0	Unmodified	1030.468	0.46795139	3398	Q8IUR0	TRAPPC5	Trafficking protein particle complex subunit 5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.5665	5.96	2	0.0030836	3684	160511_QHF_FH_JSI9i_1	71.877	53.147			2.3831	1.9604	NaN	1	1	Median	2.3831	1.9604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27121000	11229000	15891000	27121000	11229000	15891000	0	0	0	0	0	0	0	0	0	29914	3398	28306	185575	250740	250740			1	
LEQASGASSSQEAGSSQAAK	1	Unmodified	1892.8712	0.87117726	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.459	11.075	3	0.0060152	8959	160511_QHF_FH_JSI12i_1	38.736	28.102			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12163000	12163000	0	0	0	0	0	0	0	0	0	0	12163000	12163000	0	29915	4404	28307	185576	250741	250741			1	
LEQAWMNEK	1	Unmodified	1147.5332	0.53319418	4386	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.723	36.29	2	0.0080635	30991	160511_QHF_FH_JSI11i_2	61.56	40.096			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13037000	13037000	0	0	0	0	0	0	0	13037000	13037000	0	0	0	0	29916	4386	28308	185577	250742	250742			1	
LEQDEYALR	0	Unmodified	1135.551	0.55095274	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			32.076	31.137	2	0.027043	27307	160511_QHF_FH_JSI10i_2	48.794	17.505			0.94929	1.1721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94929	1.1721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28683000	16289000	12394000	0	0	0	28683000	16289000	12394000	0	0	0	0	0	0	29917	1848	28309	185578	250743	250743			1	
LEQDQLWIGTK	1	Unmodified	1329.6929	0.69286595	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		59.873	59.124	2	0.00012054	53457	160511_QHF_FH_JSI10i_1	91.313	50.284			1.895	1.8666	34.817	2	2	Median	2.8503	2.3877	NaN	1	1	Median	1.2598	1.4593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	216510000	95623000	120880000	63699000	13964000	49735000	152810000	81659000	71149000	0	0	0	0	0	0	29918	175	28310	185579;185580;185581;185582	250744;250745;250746;250747	250746			4	
LEQEEQQR	0	Unmodified	1058.4993	0.49925152	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.842	2.5424	2	0.0001632	3334	160511_QHF_FH_JSI12i_1	123.72	89.717			0.93737	1.0554	7.0759	7	0	Median	1.2906	1.0554	NaN	1	0	Median	0.90008	1.0577	2.4866	2	0	Median	1.1591	1.1336	9.3672	2	0	Median	0.92878	0.98885	4.4476	2	0	Median	2042700000	1038400000	1004300000	378940000	161480000	217460000	524720000	268200000	256520000	558510000	297470000	261040000	580550000	311290000	269260000	29919	2825	28311	185583;185584;185585;185586;185587;185588;185589	250748;250749;250750;250751;250752;250753;250754;250755;250756;250757;250758	250750			11	
LEQEHTNR	0	Unmodified	1025.489	0.48902118	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	3.3903	3.0114	3	0.0050997	1107	160511_QHF_FH_JSI11i_2	44.719	31.682			1.3308	1.3785	7.6157	4	0	Median	1.635	1.4267	NaN	1	0	Median	0.97588	1.2232	NaN	1	0	Median	1.3419	1.3319	NaN	1	0	Median	1.3198	1.4432	NaN	1	0	Median	80756000	38091000	42665000	19052000	6638400	12414000	14046000	9042200	5004000	29255000	13613000	15642000	18403000	8797200	9605500	29920	4673	28312	185590;185591;185592;185593	250759;250760;250761	250760			3	
LEQELFSGGNTGINFEK	1	Unmodified	1881.9109	0.91085723	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	73.833	73.146	2;3	2.3142E-15	66124	160511_QHF_FH_JSI10i_1	155.98	107.24			0.87946	0.89199	13.368	16	0	Median	1.0544	0.9064	21.682	4	0	Median	0.72846	0.80531	13.131	4	0	Linear	0.87795	0.85512	7.656	4	0	Median	0.90011	0.96771	9.279	4	0	Median	1942300000	1064700000	877560000	298860000	147510000	151350000	524280000	304550000	219730000	693430000	384870000	308560000	425730000	227810000	197920000	29921	154	28313	185594;185595;185596;185597;185598;185599;185600;185601;185602;185603;185604;185605;185606;185607;185608;185609	250762;250763;250764;250765;250766;250767;250768;250769;250770;250771;250772;250773;250774;250775;250776;250777;250778;250779;250780;250781;250782;250783;250784;250785;250786;250787	250774			25	
LEQENDDLAHELVTSK	1	Unmodified	1839.885	0.88503641	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	50.86	50.184	2;3	1.0299E-11	45659	160511_QHF_FH_JSI12i_1	113.65	81.125			1.2068	1.1567	14.905	4	1	Median	1.4433	1.1791	NaN	1	1	Median	0.77018	0.89845	NaN	1	0	Median	1.1653	1.1348	NaN	1	0	Median	1.2499	1.2685	NaN	1	0	Median	418850000	196010000	222850000	73446000	33812000	39634000	114820000	59767000	55055000	143000000	63879000	79117000	87592000	38550000	49042000	29922	5599	28314	185610;185611;185612;185613;185614	250788;250789;250790;250791;250792	250790			4	
LEQFVSILMASIPLPDK	1	Unmodified	1900.038	0.037971996	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.81		5	3						7	3	3	5	4	100.92	96.763	2;3	5.1907E-112	51252	160513_QHF_FH_JSI11Kac_6	256.81	191.41			0.99432	1.058	36.209	15	2	Median	0.63183	0.53551	66.412	3	1	Plateau	0.67266	0.91319	9.7722	3	0	Plateau	0.99432	0.98721	11.008	5	0	Median	1.404	1.4581	32.977	4	1	Median	5257700000	2617400000	2640200000	1073600000	536180000	537380000	1171200000	692680000	478570000	1690200000	912670000	777520000	1322700000	475920000	846760000	29923	771	28315	185615;185616;185617;185618;185619;185620;185621;185622;185623;185624;185625;185626;185627;185628;185629	250793;250794;250795;250796;250797;250798;250799;250800;250801;250802;250803;250804;250805;250806;250807;250808;250809;250810;250811;250812;250813;250814;250815;250816	250801			24	
LEQGQAIDDLMPAQK	1	Unmodified	1655.8189	0.8188711	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.098	60.457	2;3	3.4025E-40	54740	160511_QHF_FH_JSI10i_1	239.39	201.3			1.019	1.0395	9.0153	8	0	Median	1.3026	1.0663	7.3536	2	0	Median	0.95917	1.15	0.6494	2	0	Median	1.0724	1.0395	1.0479	2	0	Median	0.89226	0.93089	7.3532	2	0	Median	4496300000	2354800000	2141600000	1113900000	526900000	586970000	1068200000	563010000	505220000	1233000000	691450000	541570000	1081200000	573420000	507800000	29924	1017	28316	185630;185631;185632;185633;185634;185635;185636;185637	250817;250818;250819;250820;250821;250822;250823;250824;250825;250826;250827;250828;250829;250830;250831;250832;250833;250834;250835;250836;250837;250838;250839;250840;250841;250842;250843;250844	250832			28	
LEQGQAIDDLMPAQK	1	Oxidation (M)	1671.8138	0.81378572	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	45.71	45.058	2	0.0020733	40461	160511_QHF_FH_JSI11i_1	65.234	46.102			2.4902	2.4993	24.215	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4902	2.4993	24.215	2	2	Median	34367000	10212000	24156000	0	0	0	0	0	0	0	0	0	34367000	10212000	24156000	29925	1017	28316	185638;185639;185640;185641	250845;250846;250847;250848	250845		609	4	
LEQGYELQFR	0	Unmodified	1281.6354	0.63535107	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		52.924	52.144	2	0.0034867	44986	160511_QHF_FH_JSI11i_2	56.432	33.003			1.0595	0.97669	15.003	2	0	Median	1.0314	0.87838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0883	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85388000	47805000	37583000	39223000	21965000	17258000	0	0	0	46165000	25840000	20325000	0	0	0	29926	1435	28317	185642;185643	250849;250850;250851	250850			3	
LEQIAAEQK	1	Unmodified	1028.5502	0.55022446	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	20.101	18.173	2	0.012075	15161	160511_QHF_FH_JSI9i_1	57.708	20.687			0.41456	0.47431	36.893	5	4	Median	0.57121	0.47431	NaN	1	1	Median	0.41456	0.48135	NaN	1	1	Median	0.57052	0.55484	58.147	2	1	Median	0.31511	0.31879	NaN	1	1	Median	390010000	245850000	144160000	87871000	45595000	42276000	103820000	64488000	39334000	84291000	61637000	22654000	114020000	74129000	39894000	29927	5375	28318	185644;185645;185646;185647;185648	250852;250853;250854;250855;250856;250857	250857			6	
LEQIDGHIAEHNSK	1	Unmodified	1589.7798	0.77978347	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	2	3	20.711	20.48	2;3	5.4167E-05	16573	160511_QHF_FH_JSI12i_3	84.046	70.083			0.88306	0.85968	21.558	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0696	1.287	NaN	1	0	Median	1.0255	0.99148	25.238	2	0	Median	0.82037	0.84106	3.096	2	1	Median	295000000	166850000	128150000	0	0	0	52660000	36599000	16061000	119480000	56062000	63423000	122860000	74194000	48662000	29928	4989	28319	185649;185650;185651;185652;185653;185654	250858;250859;250860;250861;250862;250863;250864;250865	250862			6	
LEQLAAK	1	Unmodified	771.44905	0.44905385	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	15.892	15.349	2	0.014342	12707	160511_QHF_FH_JSI11i_1	67.035	25.733			0.79402	0.77938	23.498	3	3	Median	1.2077	0.97941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79402	0.77938	NaN	1	1	Median	0.58441	0.61219	NaN	1	1	Median	652550000	450530000	202020000	174430000	99704000	74722000	0	0	0	245150000	181730000	63419000	232970000	169100000	63875000	29929	1685	28320	185655;185656;185657	250866;250867;250868	250866			3	
LEQLAAKFK	2	Acetyl (K)	1088.623	0.62299547	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		65.597	54.541	2	0.011976	30548	160513_QHF_FH_JSI11Kac_4	69.825	15.667			0.16015	0.15102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16015	0.15102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1186600	994630	191980	0	0	0	0	0	0	1186600	994630	191980	0	0	0	29930	1685	28321	185658	250869	250869	1708		1	
LEQLFQDEVAK	1	Unmodified	1318.6769	0.67688153	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		55.213	54.809	2	0.0024884	49437	160511_QHF_FH_JSI10i_1	72.2	45.817			2.8635	3.109	4.8521	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5104	3.0042	NaN	1	1	Median	3.2663	3.2176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	665310000	110750000	554570000	0	0	0	265210000	47502000	217700000	400110000	63243000	336860000	0	0	0	29931	2636	28322	185659;185660	250870;250871	250871			2	
LEQLGIPR	0	Unmodified	924.53927	0.53926584	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.372	42.985	2	0.026895	36900	160511_QHF_FH_JSI12i_2	51.736	19.265			0.10829	0.11995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10829	0.11995	NaN	1	1	Median	637830000	586720000	51112000	0	0	0	0	0	0	0	0	0	637830000	586720000	51112000	29932	2261	28323	185661	250872	250872			1	
LEQLNQYPDFNNYLIFVLTK	1	Unmodified	2471.2737	0.27366225	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.81		5							8	4	2	4	3	99.615	94.393	2;3	1.69E-275	48549	160513_QHF_FH_JSI12Kac_6	345.97	286.75			0.9936	0.9693	14.093	13	0	Median	1.1017	0.93499	9.9348	4	0	Median	0.71498	0.84955	2.2269	2	0	Median	0.9675	0.95297	18.066	4	0	Median	0.9936	1.0848	6.9355	3	0	Median	8315200000	4237000000	4078200000	1529900000	725100000	804830000	1510300000	961120000	549160000	3495400000	1677500000	1817900000	1779600000	873230000	906350000	29933	3914	28324	185662;185663;185664;185665;185666;185667;185668;185669;185670;185671;185672;185673;185674	250873;250874;250875;250876;250877;250878;250879;250880;250881;250882;250883;250884;250885;250886;250887;250888;250889;250890	250886			17	
LEQLSSGNK	1	Unmodified	974.50327	0.50327426	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	12.212	11.949	2	0.016378	9552	160511_QHF_FH_JSI11i_1	43.149	15.315			0.86347	0.86843	14.599	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0097	0.96288	NaN	1	0	Median	0.7384	0.78326	NaN	1	0	Median	214720000	110190000	104520000	0	0	0	0	0	0	106150000	51162000	54990000	108560000	59031000	49533000	29934	2213	28325	185675;185676	250891	250891			1	
LEQMPSK	1	Unmodified	831.41604	0.41603916	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.721	14.267	2	0.020108	11493	160511_QHF_FH_JSI9i_1	57.281	15.779			0.88498	0.90533	8.7714	4	0	Median	1.1031	0.91086	NaN	1	0	Median	0.88605	1.0537	NaN	1	0	Median	0.88391	0.86079	NaN	1	0	Median	0.86614	0.89984	NaN	1	0	Median	2495000000	1358200000	1136800000	479860000	262100000	217760000	732840000	377290000	355550000	733020000	371780000	361240000	549290000	347040000	202250000	29935	939	28326	185677;185678;185679;185680	250892;250893;250894;250895	250894			4	
LEQMPSKEDAIEHFMK	2	Unmodified	1931.9121	0.91211956	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	58.078	57.799	3;4	3.4649E-05	51211	160511_QHF_FH_JSI11i_3	95.347	84.086			0.77051	0.74537	43.13	5	3	Median	NaN	NaN	NaN	0	0	Median	1.5647	1.9125	NaN	1	1	Median	0.73385	0.69769	8.8222	2	1	Median	0.83797	0.85331	19.127	2	1	Median	857650000	439620000	418030000	0	0	0	83593000	27682000	55911000	347860000	165780000	182080000	426190000	246160000	180040000	29936	939	28327	185681;185682;185683;185684;185685	250896;250897;250898;250899;250900;250901;250902;250903;250904	250898			9	
LEQPDPGAVAAAAILR	0	Unmodified	1590.873	0.87295558	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	80.919	80.377	2;3	2.0052E-05	73170	160511_QHF_FH_JSI11i_1	75.911	59.561			0.73133	0.72089	20.561	6	4	Median	1.0603	0.88788	14.478	2	0	Median	0.49685	0.57829	NaN	1	1	Median	0.69342	0.64841	NaN	1	1	Median	0.67637	0.71001	20.958	2	2	Median	402750000	243840000	158910000	102870000	50788000	52080000	137950000	95615000	42337000	49845000	28621000	21224000	112080000	68817000	43265000	29937	2817	28328	185686;185687;185688;185689;185690;185691	250905;250906;250907;250908;250909;250910;250911;250912	250905			8	
LEQQCQK	1	Unmodified	932.43857	0.43856552	2587;141	Q14980;O00471	NUMA1;EXOC5	Nuclear mitotic apparatus protein 1;Exocyst complex component 5	no	no	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	4.8802	4.6597	2	0.0048398	2520	160511_QHF_FH_JSI12i_1	97.071	26.158			1.2377	1.2316	47.909	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90912	0.87768	NaN	1	0	Median	1.685	1.7282	NaN	1	0	Median	177650000	84927000	92722000	0	0	0	0	0	0	79605000	39811000	39794000	98044000	45116000	52928000	29938	2587;141	28329	185692;185693	250913	250913			1	
LEQQLVHVERPILR	0	Unmodified	1728.9999	0.99988743	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				51.213	49.616	4	0.020422	40628	160511_QHF_FH_JSI9i_3	26.148	15.809			0.82985	0.69617	NaN	1	0	Median	0.82985	0.69617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15071000	7076900	7994400	15071000	7076900	7994400	0	0	0	0	0	0	0	0	0	29939	5393	28330	185694	250914	250914			1	
LEQQVPVNQVFGQDEMIDVIGVTK	1	Unmodified	2685.3684	0.36836727	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	101.08	100.98	2;3;4	1.3103E-145	91677	160511_QHF_FH_JSI10i_1	294.59	261.39			1.0001	1.0208	5.3028	9	0	Median	1.2563	1.039	2.5061	2	0	Median	0.76979	0.92585	4.6883	3	0	Plateau	1.0811	1.0521	0.45485	2	0	Median	0.9454	0.99629	7.1951	2	0	Median	9760900000	5104700000	4656200000	870510000	344790000	525720000	3054900000	1777300000	1277600000	2567600000	1262100000	1305500000	3267900000	1720600000	1547300000	29940	1484	28331	185695;185696;185697;185698;185699;185700;185701;185702;185703	250915;250916;250917;250918;250919;250920;250921;250922;250923;250924;250925;250926;250927;250928;250929;250930;250931	250924			17	
LEQQVPVNQVFGQDEMIDVIGVTK	1	Oxidation (M)	2701.3633	0.36328189	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	92.699	92.316	3	5.8423E-08	84055	160511_QHF_FH_JSI12i_1	71.091	63.731			0.89477	0.8898	12.204	4	1	Median	1.0563	0.90016	NaN	1	0	Median	0.59616	0.70042	NaN	1	0	Median	0.93644	0.89971	NaN	1	1	Median	0.85496	0.87999	NaN	1	0	Median	152520000	78901000	73617000	32407000	10766000	21641000	52336000	35135000	17201000	33232000	14985000	18247000	34544000	18016000	16529000	29941	1484	28331	185704;185705;185706;185707	250932;250933;250934;250935;250936	250933		1164	5	
LEQSEAQLGR	0	Unmodified	1129.5728	0.57275081	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	18.75	18.303	2	2.5599E-05	15755	160511_QHF_FH_JSI12i_1	97.565	52.484			0.74315	0.87139	14.317	5	3	Median	1.0918	0.88247	NaN	1	0	Median	0.79312	0.92348	8.2113	2	2	Median	0.70488	0.68511	NaN	1	1	Median	0.69422	0.74374	NaN	1	0	Median	1456800000	807300000	649470000	266190000	144870000	121320000	615810000	324740000	291070000	297250000	189410000	107850000	277520000	148280000	129240000	29942	3905	28332	185708;185709;185710;185711;185712	250937;250938;250939;250940;250941;250942	250939			6	
LEQSTIVK	1	Unmodified	916.52295	0.52294707	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.51	4	4	2			3	2			3	4	4	4	23.112	19.992	2	0.00093466	16931	160511_QHF_FH_JSI11i_1	96.253	43.086			0.96891	0.95547	41.463	15	2	Median	0.96891	0.81115	3.0857	3	1	Median	0.70966	0.83456	30.259	4	1	Median	1.0293	1.0163	66.879	4	0	Median	0.90874	0.98428	23.891	4	0	Median	5942900000	2906400000	3036500000	1320000000	691380000	628570000	1396400000	733210000	663160000	1598000000	655150000	942810000	1628700000	826650000	802000000	29943	2193	28333	185713;185714;185715;185716;185717;185718;185719;185720;185721;185722;185723;185724;185725;185726;185727	250943;250944;250945;250946;250947;250948;250949;250950;250951;250952;250953;250954;250955;250956;250957;250958;250959;250960;250961;250962;250963;250964;250965	250943			23	
LEQSTIVKER	1	Acetyl (K)	1243.6772	0.67721588	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		38.648	28.997	2	0.0061305	17689	160513_QHF_FH_JSI11Kac_4	65.305	19.147			0.73286	0.77965	59.437	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0487	1.1869	NaN	1	0	Median	0.51217	0.51212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7785100	4665400	3119600	0	0	0	2611500	1156500	1455000	5173600	3509000	1664600	0	0	0	29944	2193	28334	185728;185729	250966	250966	2309		1	
LEQSTIVKERGTVYFK	2	Unmodified	1897.0309	0.030912783	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	102.28	102.29	2	0.030449	88973	160511_QHF_FH_JSI12i_3	50.284	25.992			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	232960000	232960000	0	0	0	0	0	0	0	0	0	0	232960000	232960000	0	29945	2193	28335	185730	250967	250967			1	
LEQVEKELLR	1	Acetyl (K)	1297.7242	0.72416608	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	68.61	57.913	2	0.048637	31588	160513_QHF_FH_JSI12Kac_4	43.308	17.686			1.379	1.5119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.379	1.5119	NaN	1	0	Median	43110000	21775000	21335000	0	0	0	0	0	0	0	0	0	43110000	21775000	21335000	29946	1612	28336	185731	250968	250968			1	
LEQVLSSMK	1	Unmodified	1033.5478	0.54778161	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.6	6.05	1	2					2				2	2	1	43.716	39.09	2	0.0028647	34856	160511_QHF_FH_JSI10i_1	72.643	38.846			0.41893	0.4189	78.319	5	5	Median	NaN	NaN	NaN	0	0	Median	0.79793	0.88734	118.79	2	2	Median	0.3641	0.36498	19.484	2	2	Median	0.86365	0.95617	NaN	1	1	Median	288590000	147140000	141450000	0	0	0	61525000	26843000	34682000	124220000	76763000	47457000	102850000	43537000	59314000	29947	386	28337	185732;185733;185734;185735;185736	250969;250970;250971;250972;250973	250971			5	
LEQYTSAIEGTK	1	Unmodified	1338.6667	0.66671078	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.13	6					2	2			1	2	4	3	40.145	36.567	2	0.00066624	33070	160511_QHF_FH_JSI12i_1	80.979	50.662			0.88474	0.92385	49.489	9	8	Median	0.8324	0.68733	NaN	1	1	Median	0.64929	0.77193	25.407	2	1	Median	1.2156	1.1759	63.845	4	4	Median	1.1758	1.2552	38.176	2	2	Median	1516200000	741270000	774930000	168340000	95113000	73223000	264410000	161750000	102660000	566890000	244390000	322500000	516570000	240030000	276550000	29948	2233	28338	185737;185738;185739;185740;185741;185742;185743;185744;185745;185746	250974;250975;250976;250977;250978;250979;250980;250981;250982;250983;250984	250977			11	
LERENAEVDGDDDAEEMEAK	1	Unmodified	2263.9387	0.93866447	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	31.584	31.077	2;3	5.9126E-25	27779	160511_QHF_FH_JSI11i_1	170.33	166.91			1.1995	1.1662	11.901	7	0	Median	1.5628	1.2504	NaN	1	0	Median	0.85465	1.0051	0.38399	2	0	Median	1.1621	1.1392	3.3176	2	0	Median	1.2634	1.3209	5.2731	2	0	Median	1728400000	931070000	797300000	245170000	105740000	139430000	561210000	359100000	202110000	444850000	226000000	218850000	477140000	240230000	236910000	29949	832	28339	185747;185748;185749;185750;185751;185752;185753	250985;250986;250987;250988;250989;250990;250991;250992;250993;250994;250995;250996;250997;250998	250986			14	
LERENAEVDGDDDAEEMEAK	1	Oxidation (M)	2279.9336	0.9335791	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	24.28	23.475	3	4.1754E-06	18226	160511_QHF_FH_JSI12i_1	90.316	87.573			1.0111	0.86465	31.6	3	1	Plateau	0.97777	0.79863	NaN	1	0	Median	1.3199	1.4853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1802	1.2087	NaN	1	0	Median	128460000	44191000	84267000	76759000	23034000	53725000	18137000	5691100	12445000	0	0	0	33563000	15466000	18097000	29950	832	28339	185754;185755;185756;185757	250999;251000;251001;251002;251003;251004	251001		351	6	
LERENAEVDGDDDAEEMEAKAED	1	Unmodified	2579.0453	0.04531439	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	2		By MS/MS		By matching	1	0	2										1		1	41.515	41.004	3	0.034865	36859	160511_QHF_FH_JSI10i_1	36.677	36.211			1.5125	1.6739	5.2417	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4492	1.7371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5785	1.613	NaN	1	0	Median	121960000	52930000	69029000	0	0	0	54255000	22349000	31906000	0	0	0	67704000	30581000	37123000	29951	832	28340	185758;185759	251005	251005			0	
LERFEIPIK	1	Unmodified	1143.6652	0.66519463	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	57.8	56.932	3	0.00062805	48726	160511_QHF_FH_JSI12i_3	68.847	51.616			0.92543	1.0392	17.358	6	1	Median	1.0965	0.92323	22.274	2	1	Median	0.86532	1.0446	6.2655	2	0	Median	1.3561	1.2777	NaN	1	0	Median	0.86452	0.86618	NaN	1	0	Median	613550000	322820000	290730000	80337000	40835000	39501000	141540000	72462000	69074000	197790000	92245000	105550000	193890000	117280000	76607000	29952	418	28341	185760;185761;185762;185763;185764;185765	251006;251007;251008;251009;251010;251011;251012;251013	251013			8	
LERPFQPAEESVTLEFAK	1	Unmodified	2090.0684	0.068420501	2954	Q5T7V8	GORAB	RAB6-interacting golgin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		73.324	72.604	3	4.3E-07	64735	160511_QHF_FH_JSI11i_3	109.28	93.342			0.8179	0.84212	28.656	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89614	1.0313	NaN	1	1	Median	0.74648	0.68766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88483000	46833000	41650000	0	0	0	41489000	22388000	19101000	46994000	24445000	22549000	0	0	0	29953	2954	28342	185766;185767	251014;251015;251016	251015			3	
LERPPETPTVDPTVK	1	Unmodified	1677.8938	0.8937506	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							1	2	3	3	41.964	41.332	3	6.3867E-05	36150	160511_QHF_FH_JSI9i_2	94.544	57.775			1.0477	1.06	27.653	9	4	Median	0.8509	0.71592	NaN	1	0	Median	0.9153	1.1023	47.588	2	1	Median	1.4662	1.3545	16.28	3	3	Median	0.99168	1.0065	4.5358	3	0	Median	567350000	290910000	276440000	61575000	36208000	25366000	101590000	51222000	50368000	214590000	106600000	107990000	189590000	96885000	92710000	29954	2578	28343	185768;185769;185770;185771;185772;185773;185774;185775;185776	251017;251018;251019;251020;251021;251022;251023;251024;251025;251026;251027;251028	251023			12	
LERVDGPK	1	Unmodified	912.50288	0.50288033	3228	Q7L523;Q5VZM2	RRAGA;RRAGB	Ras-related GTP-binding protein A;Ras-related GTP-binding protein B	yes	no	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	9.2724	9.3212	3	0.012313	6724	160511_QHF_FH_JSI12i_3	41.876	18.448			0.82172	0.80885	14.644	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9497	0.8971	NaN	1	0	Median	0.71098	0.72929	NaN	1	0	Median	155480000	81882000	73596000	0	0	0	0	0	0	57451000	26282000	31168000	98027000	55600000	42427000	29955	3228	28344	185777;185778	251029	251029			1	
LESALTELEQLRK	1	Unmodified	1528.8461	0.84607213	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	69.468	68.753	3	2.0234E-05	60101	160511_QHF_FH_JSI11i_2	88.282	75.75			0.82866	0.94104	19.098	5	2	Median	0.82866	0.70795	NaN	1	0	Median	0.74554	0.90703	NaN	1	0	Median	1.1254	1.096	13.079	2	1	Median	0.81682	0.94104	NaN	1	1	Median	1497400000	704340000	793080000	194570000	88048000	106520000	245530000	160110000	85419000	990550000	426180000	564370000	66765000	29994000	36771000	29956	1016	28345	185779;185780;185781;185782;185783	251030;251031;251032;251033;251034;251035;251036;251037	251034			8	
LESAQATFQAHR	0	Unmodified	1357.6739	0.67386184	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	22.147	22.138	3	0.011279	18144	160511_QHF_FH_JSI12i_3	27.005	22.46			0.25705	0.26098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25705	0.26098	NaN	1	0	Median	34217000	28867000	5350000	0	0	0	0	0	0	0	0	0	34217000	28867000	5350000	29957	1795	28346	185784	251038	251038			1	
LESDYEILER	0	Unmodified	1265.6139	0.61394692	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	52.518	51.98	2	1.0425E-09	47059	160511_QHF_FH_JSI11i_1	136.33	115.42			0.98935	1.014	3.2312	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.009	0.99107	NaN	1	0	Median	0.97006	1.0374	NaN	1	0	Median	817570000	407450000	410120000	0	0	0	0	0	0	457370000	232500000	224870000	360200000	174960000	185250000	29958	1520	28347	185785;185786;185787;185788;185789	251039;251040;251041;251042;251043;251044;251045	251040			7	
LESDYEILERFPGAYLK	1	Unmodified	2042.0361	0.03605774	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	92.058	92.036	3	1.9832E-06	79865	160511_QHF_FH_JSI12i_3	96.163	80.279			1.1538	1.1014	4.8625	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2482	1.1399	NaN	1	0	Median	1.0665	1.0642	NaN	1	0	Median	249450000	114730000	134720000	0	0	0	0	0	0	92259000	45688000	46571000	157200000	69044000	88151000	29959	1520	28348	185790;185791	251046;251047;251048	251048			3	
LESEEEGVPSTAIR	0	Unmodified	1515.7417	0.74166663	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	39.394	38.816	2	5.3037E-08	34370	160511_QHF_FH_JSI9i_1	141.08	95.947			0.77623	0.87642	11.627	5	2	Median	1.0699	0.87642	NaN	1	0	Median	0.6715	0.79336	16.947	2	2	Median	0.77623	0.77418	NaN	1	0	Median	0.90958	0.93224	NaN	1	0	Median	542770000	277200000	265570000	92262000	45340000	46922000	220520000	110950000	109570000	132100000	69866000	62233000	97888000	51043000	46845000	29960	850	28349	185792;185793;185794;185795;185796	251049;251050;251051;251052;251053;251054;251055;251056	251056			8	
LESEGSPETLTNLRK	1	Unmodified	1672.8632	0.86317875	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0.707	1	2	1							1	1		2	47.216	46.51	3	0.015492	34744	160511_QHF_FH_JSI10i_2	40.857	26.629			1.0234	1.1694	72.35	4	3	Median	3.6547	3.2042	NaN	1	1	Median	0.73432	0.91381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9186	0.9424	65.387	2	1	Median	91518000	47885000	43633000	18327000	6249600	12077000	27748000	18606000	9141600	0	0	0	45444000	23029000	22414000	29961	5177	28350	185797;185798;185799;185800	251057;251058;251059;251060	251059			4	
LESEHPDQAQAILSR	0	Unmodified	1692.8431	0.84311201	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.567	2	6	1							1	2	3	3	37.562	36.852	2;3	2.6114E-05	32318	160511_QHF_FH_JSI10i_2	100.41	88.642			1.0022	1.104	22.905	9	0	Median	0.99877	0.83657	NaN	1	0	Median	0.86747	1.0439	7.9156	2	0	Median	1.0079	1.0118	20.805	3	0	Plateau	1.0022	1.1281	30.575	3	0	Median	495970000	243860000	252110000	73970000	35181000	38789000	130790000	66423000	64366000	164700000	69195000	95504000	126510000	73063000	53446000	29962	2162	28351	185801;185802;185803;185804;185805;185806;185807;185808;185809	251061;251062;251063;251064;251065;251066;251067;251068;251069;251070;251071	251070			11	
LESEMEDAYHEHQANLLR	0	Unmodified	2183.9906	0.99058089	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	47.492	47.131	3;4	7.4304E-05	41740	160511_QHF_FH_JSI10i_2	63.436	53.515			1.527	1.5615	14.859	4	1	Median	NaN	NaN	NaN	0	0	Median	1.09	1.315	NaN	1	0	Median	2.0346	1.8906	NaN	1	1	Median	1.527	1.5615	1.5193	2	0	Median	295110000	121800000	173310000	0	0	0	43049000	22319000	20730000	77866000	27890000	49976000	174190000	71589000	102600000	29963	1222	28352	185810;185811;185812;185813	251072;251073;251074;251075	251073			4	
LESENDEYER	0	Unmodified	1282.5313	0.53133951	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	13.667	13.406	2	0.00018817	11068	160511_QHF_FH_JSI10i_1	82.261	79.581			1.1242	1.2292	9.533	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1242	1.3023	NaN	1	0	Median	1.1197	1.081	NaN	1	0	Median	1.1655	1.2292	NaN	1	0	Median	240410000	119290000	121120000	0	0	0	100810000	44677000	56137000	77798000	43762000	34036000	61795000	30849000	30945000	29964	623	28353	185814;185815;185816	251076;251077;251078;251079;251080;251081	251081			6	
LESGMQNMSIHTK	1	Oxidation (M)	1490.6857	0.68574843	51;85	CON__P05787;P05787;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.09		17	13				2		2	6	8	12	8	22.133	20.432	2;3	1.6251E-05	27423	160511_QHF_FH_JSI9i_2	115.8	101.55		+	0.92511	0.91935	54.889	28	7	Median	0.805	0.69021	89.577	5	3	Median	1.0682	1.3259	54.642	5	0	Median	0.88379	0.88734	56.44	10	4	Median	0.98615	0.99136	28.336	8	0	Median	4170700000	2372900000	1797800000	456430000	302760000	153670000	720990000	363550000	357440000	1271900000	757380000	514480000	1721400000	949180000	772200000	29965	51;85	28354	185817;185818;185819;185820;185821;185822;185823;185824;185825;185826;185827;185828;185829;185830;185831;185832;185833;185834;185835;185836;185837;185838;185839;185840;185841;185842;185843;185844;185845;185846;185847;185848;185849;185850	251082;251083;251084;251085;251086;251087;251088;251089;251090;251091;251092;251093;251094;251095;251096;251097;251098;251099;251100;251101;251102;251103;251104;251105;251106;251107;251108;251109;251110;251111;251112;251113;251114;251115;251116;251117;251118;251119	251098		19;20;38;39	38	
LESGMQNMSIHTK	1	Unmodified	1474.6908	0.69083381	51;85	CON__P05787;P05787;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.98	6.24	2	12	14				1	6	8	9	8	17	9	35.084	31.35	2;3	5.0709E-42	26579	160511_QHF_FH_JSI12i_3	210.91	190.04		+	0.94055	0.93441	56.446	37	8	Median	0.99126	0.81256	12.472	8	2	Median	0.81665	1.0049	31.266	7	2	Median	1.0177	0.96721	68.76	15	3	Median	0.99582	0.99449	75.451	7	1	Median	19090000000	10943000000	8146900000	1926600000	1154000000	772610000	3715900000	2335600000	1380300000	10422000000	5706400000	4715300000	3025600000	1746800000	1278700000	29966	51;85	28354	185851;185852;185853;185854;185855;185856;185857;185858;185859;185860;185861;185862;185863;185864;185865;185866;185867;185868;185869;185870;185871;185872;185873;185874;185875;185876;185877;185878;185879;185880;185881;185882;185883;185884;185885;185886;185887;185888;185889;185890;185891;185892;185893	251120;251121;251122;251123;251124;251125;251126;251127;251128;251129;251130;251131;251132;251133;251134;251135;251136;251137;251138;251139;251140;251141;251142;251143;251144;251145;251146;251147;251148;251149;251150;251151;251152;251153;251154;251155;251156;251157;251158;251159;251160;251161;251162;251163;251164;251165;251166;251167;251168;251169;251170;251171;251172;251173;251174;251175;251176;251177;251178;251179;251180;251181;251182;251183	251175			62	
LESGMQNMSIHTK	1	2 Oxidation (M)	1506.6807	0.68066306	51;85	CON__P05787;P05787;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	2	0	By MS/MS		By MS/MS	By MS/MS	2.18	0.386		9	2							2		4	5	19.527	18.928	3	1.4499E-05	27364	160511_QHF_FH_JSI11i_3	111.12	99.857		+	1.1061	1.0361	62.5	11	1	Median	1.1885	1.0196	2.2729	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83004	0.80835	41.133	4	0	Median	1.1826	1.2257	78.593	5	1	Median	1103700000	582400000	521300000	96812000	39681000	57131000	0	0	0	395780000	217520000	178260000	611110000	325200000	285910000	29967	51;85	28354	185894;185895;185896;185897;185898;185899;185900;185901;185902;185903;185904	251184;251185;251186;251187;251188;251189;251190	251184		19;20;38;39	7	
LESGSICK	1	Unmodified	892.43242	0.43241751	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	13.811	13.404	2	0.015282	10993	160511_QHF_FH_JSI10i_1	50.607	14.727			0.90092	0.87614	43.127	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65207	0.76962	NaN	1	0	Median	0.90092	0.87614	NaN	1	0	Median	1.6036	1.7185	NaN	1	0	Median	654680000	341250000	313430000	0	0	0	300690000	175330000	125350000	339710000	161620000	178080000	14287000	4292500	9994900	29968	1069	28355	185905;185906;185907	251191;251192;251193;251194	251194			4	
LESIADMK	1	Unmodified	905.45282	0.4528186	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	35.92	35.448	2	0.052614	32105	160511_QHF_FH_JSI12i_1	36.701	12.069			0.7789	0.84681	5.6159	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76232	0.88112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79585	0.81384	NaN	1	0	Median	150110000	86082000	64032000	0	0	0	84532000	49107000	35425000	0	0	0	65583000	36976000	28607000	29969	4967	28356	185908;185909	251195	251195			1	
LESIASVFK	1	Unmodified	992.55425	0.5542472	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			64.909	64.074	2	0.011813	56761	160511_QHF_FH_JSI10i_2	57.96	32.223			1.3128	1.6263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3128	1.6263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28289000	11473000	16816000	0	0	0	28289000	11473000	16816000	0	0	0	0	0	0	29970	5368	28357	185910	251196	251196			1	
LESIDGNEEESMK	1	Oxidation (M)	1495.6348	0.6348183	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	1	0				By MS/MS	1	0	2												2	22.295	21.792	2	9.9153E-05	19177	160511_QHF_FH_JSI12i_1	79.693	65.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29971	3736	28358	185911;185912	251197;251198	251198		2288	2	
LESIISGAALMADSSCTR	0	Unmodified	1880.8972	0.89719777	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0				By MS/MS	2	0		1											1	79.26	78.058	2	0.00025429	67475	160511_QHF_FH_JSI12i_2	88.087	74.181			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29972	1421;1272	28359	185913	251199	251199			1	
LESLSAATTFEPLEPVK	1	Unmodified	1830.9615	0.96149581	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	84.053	83.582	2;3	8.1113E-11	74456	160511_QHF_FH_JSI9i_1	184.1	142.39			0.95171	0.89472	14.526	6	2	Median	1.1404	0.93371	4.667	2	1	Median	0.65347	0.77142	16.774	2	1	Median	0.90957	0.88613	NaN	1	0	Median	0.9958	1.0576	NaN	1	0	Median	227510000	128150000	99367000	41912000	18912000	23000000	111710000	69637000	42068000	34566000	17652000	16914000	39331000	21946000	17386000	29973	3503	28360	185914;185915;185916;185917;185918;185919	251200;251201;251202;251203;251204;251205;251206;251207	251206			8	
LESLSYQLSGLQK	1	Unmodified	1464.7824	0.78240924	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	66.006	65.107	2	6.6554E-05	56829	160511_QHF_FH_JSI11i_2	114.86	90.071			0.70644	0.71583	26.011	3	1	Median	NaN	NaN	NaN	0	0	Median	0.46919	0.5829	NaN	1	0	Median	0.70644	0.71583	NaN	1	1	Median	0.89623	0.97715	NaN	1	0	Median	74759000	48540000	26219000	0	0	0	19346000	13883000	5462600	28286000	17106000	11180000	27127000	17551000	9576600	29974	2207	28361	185920;185921;185922	251208;251209	251209			2	
LESPSFTGTGDTEIAHATEDLENNGSK	1	Unmodified	2819.2733	0.27334049	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	71.14	70.405	3	4.4986E-151	63735	160511_QHF_FH_JSI10i_1	282.35	277			1.1319	1.0325	20.732	9	4	Median	1.2257	1.0118	5.3555	3	2	Median	0.99153	1.1851	22.073	2	0	Median	1.082	1.067	13.037	2	1	Median	1.2784	1.3809	36.002	2	1	Median	971420000	489510000	481910000	222550000	103670000	118880000	242550000	117240000	125320000	237300000	115440000	121860000	269010000	153160000	115850000	29975	2282	28362	185923;185924;185925;185926;185927;185928;185929;185930;185931	251210;251211;251212;251213;251214;251215;251216;251217;251218;251219;251220;251221;251222	251215			13	
LESPSFTGTGDTEIAHATEDLENNGSKK	2	Unmodified	2947.3683	0.36830351	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.716	2	5	4							1	1	4	5	66.186	65.561	3;4	8.7578E-37	58214	160511_QHF_FH_JSI11i_3	166.35	151.77			0.97724	0.9827	21.889	10	2	Median	1.1026	0.94328	NaN	1	0	Median	0.97309	1.2054	NaN	1	0	Median	0.94615	0.93906	23.35	4	0	Median	1.0556	1.1224	25.198	4	2	Median	1751500000	926440000	825050000	256750000	147590000	109160000	420110000	266890000	153220000	701580000	321250000	380320000	373050000	190710000	182340000	29976	2282	28363	185932;185933;185934;185935;185936;185937;185938;185939;185940;185941;185942	251223;251224;251225;251226;251227;251228;251229;251230;251231;251232;251233;251234;251235;251236;251237;251238;251239;251240;251241;251242;251243;251244	251224			22	
LESPTVSTLTPSSPGK	1	Unmodified	1599.8356	0.83556702	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	54.065	51.144	2;3	1.9026E-08	45935	160511_QHF_FH_JSI10i_1	100.31	88.142			0.93634	0.92338	19.084	8	2	Median	1.0848	0.89606	13.192	2	1	Median	0.79212	0.93545	NaN	1	0	Median	1.0175	0.97382	27.543	2	0	Median	0.81505	0.83857	27.502	3	1	Plateau	783130000	420740000	362390000	271930000	139660000	132270000	123270000	77705000	45567000	159340000	79454000	79885000	228580000	123920000	104660000	29977	4000	28364	185943;185944;185945;185946;185947;185948;185949;185950;185951;185952	251245;251246;251247;251248;251249;251250;251251;251252;251253;251254;251255;251256;251257;251258;251259;251260;251261;251262	251258			18	
LESSEESK	1	Unmodified	907.41346	0.4134562	1276	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.2531	5.0298	2	0.010863	2933	160511_QHF_FH_JSI12i_1	54.712	2.8581			3.0083	3.0142	47.851	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3585	4.2278	NaN	1	0	Median	2.0764	2.1489	NaN	1	0	Median	176790000	49275000	127510000	0	0	0	0	0	0	74085000	15337000	58748000	102710000	33939000	68767000	29978	1276	28365	185953;185954	251263	251263			1	
LESSEGEIIQTVDR	0	Unmodified	1574.7788	0.77878042	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	53.122	52.651	2	3.559E-06	47668	160511_QHF_FH_JSI11i_1	127.17	95.752			1.1497	1.2381	8.5315	4	2	Median	NaN	NaN	NaN	0	0	Median	0.99212	1.1892	14.133	2	2	Median	1.3286	1.2516	NaN	1	0	Median	1.2022	1.2248	NaN	1	0	Median	278680000	131140000	147540000	0	0	0	156150000	81522000	74633000	66581000	23661000	42919000	55943000	25953000	29991000	29979	4290	28366	185955;185956;185957;185958	251264;251265;251266;251267	251264			4	
LESSQLQIAGLEHLR	0	Unmodified	1692.9159	0.91588303	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.214	66.314	3	0.003009	57187	160511_QHF_FH_JSI12i_2	53.924	46.633			0.69937	0.70647	7.491	4	1	Median	0.82463	0.69309	NaN	1	0	Median	0.50533	0.62932	NaN	1	0	Median	0.71812	0.72012	NaN	1	0	Median	0.68111	0.74966	NaN	1	1	Median	236820000	142570000	94256000	34602000	18732000	15870000	68083000	46604000	21479000	74214000	40705000	33508000	59926000	36527000	23399000	29980	2574	28367	185959;185960;185961;185962	251268;251269	251268			2	
LESTESR	0	Unmodified	820.39266	0.39266118	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	5.0655	2.4349	2	0.014873	1727	160513_QHF_FH_JSI11Kac_3	75.269	24.962			0.91781	0.94837	11.651	9	2	Median	1.0187	0.84272	NaN	1	1	Median	0.97712	1.1554	17.862	3	1	Plateau	0.96971	0.95489	6.5625	3	0	Median	0.81394	0.88461	9.8431	2	0	Median	5694700000	2968500000	2726200000	559150000	276290000	282860000	1816700000	951170000	865490000	1665000000	817160000	847850000	1653800000	923880000	729950000	29981	791	28368	185963;185964;185965;185966;185967;185968;185969;185970;185971	251270;251271;251272;251273;251274	251271			5	
LESTLNYGMER	0	Unmodified	1311.6129	0.61290107	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								2	3	3	1	41.997	41.418	2	4.5391E-23	35605	160511_QHF_FH_JSI11i_2	172.88	153.09			1.137	1.149	14.654	5	4	Median	1.2119	1.0343	NaN	1	1	Median	1.137	1.3553	NaN	1	1	Median	1.048	1.0416	17.895	2	1	Median	1.1034	1.149	NaN	1	1	Median	1028000000	462420000	565590000	150190000	61096000	89097000	220800000	79028000	141770000	490240000	243330000	246910000	166770000	78969000	87803000	29982	1438	28369	185972;185973;185974;185975;185976;185977;185978;185979;185980	251275;251276;251277;251278;251279;251280;251281;251282;251283;251284	251283			10	
LESTVGSPEKPLSDLGK	2	Acetyl (K)	1797.936	0.93600934	4772	Q9H7Z6	KAT8	Histone acetyltransferase KAT8	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.8	0.433					1	3					2		2	73.162	64.626	2;3	1.1515E-10	32377	160513_QHF_FH_JSI12Kac_3	126.76	111.23			0.8367	0.95004	21.025	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69471	0.81879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0077	1.1023	NaN	1	0	Median	9571100	5901800	3669300	0	0	0	4663700	3340700	1323000	0	0	0	4907400	2561100	2346300	29983	4772	28370	185981;185982;185983;185984	251285;251286;251287;251288	251285	3225		4	
LESVSEDPTQLEEVEK	1	Unmodified	1830.8735	0.87346867	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	59.056	56.642	2	5.2997E-98	51392	160511_QHF_FH_JSI12i_1	263.74	245.93			0.95836	0.98013	11.802	5	0	Median	1.2346	1.0062	NaN	1	0	Median	0.8421	0.98013	NaN	1	0	Median	0.98778	0.94636	NaN	1	0	Median	0.81948	0.87547	19.825	2	0	Median	561720000	278520000	283200000	132870000	69482000	63392000	137830000	70617000	67211000	150040000	76351000	73690000	140980000	62065000	78912000	29984	4157	28371	185985;185986;185987;185988;185989	251289;251290;251291;251292;251293;251294;251295;251296	251290			8	
LETAESK	1	Unmodified	776.3916	0.39159855	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	6.3184	5.9639	2	0.029842	3967	160511_QHF_FH_JSI12i_1	52.403	8.0079			0.66855	0.55295	31.718	3	0	Plateau	0.89804	0.75166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99046	0.97173	NaN	1	0	Median	0.4977	0.51716	NaN	1	0	Median	1017300000	615650000	401690000	348200000	183920000	164280000	0	0	0	185520000	105940000	79578000	483620000	325790000	157830000	29985	5474	28372	185990;185991;185992	251297	251297			1	
LETFIQEHLR	0	Unmodified	1284.6826	0.68263561	1624	P48509	CD151	CD151 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	52.541	51.99	3	1.1662E-11	44462	160511_QHF_FH_JSI12i_3	147.74	124.52			0.94543	1.0185	18.48	4	1	Median	1.548	1.3509	NaN	1	0	Median	0.91	1.1109	NaN	1	1	Median	0.95054	0.90387	NaN	1	0	Median	0.94036	0.93382	NaN	1	0	Median	352320000	176390000	175930000	30320000	16317000	14002000	39240000	18690000	20550000	128890000	65334000	63561000	153870000	76045000	77820000	29986	1624	28373	185993;185994;185995;185996	251298;251299;251300;251301;251302;251303;251304	251304			7	
LETHMTPEMFR	0	Unmodified	1390.6373	0.63734168	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		9	10							6	3	5	5	49.997	49.198	2;3	8.0859E-14	42413	160511_QHF_FH_JSI12i_2	132.32	129			1.1108	1.1566	20.144	18	8	Median	0.98128	0.82582	26.64	5	3	Median	0.79842	0.97246	12.534	3	1	Plateau	1.2497	1.2713	8.0145	5	2	Median	1.1123	1.1791	11.315	5	2	Median	5039600000	2454900000	2584700000	799730000	355050000	444680000	868780000	483340000	385440000	2015300000	925730000	1089500000	1355800000	690820000	665000000	29987	2265	28374	185997;185998;185999;186000;186001;186002;186003;186004;186005;186006;186007;186008;186009;186010;186011;186012;186013;186014;186015	251305;251306;251307;251308;251309;251310;251311;251312;251313;251314;251315;251316;251317;251318;251319;251320;251321;251322;251323;251324;251325;251326;251327;251328;251329;251330;251331;251332;251333	251312			29	
LETHMTPEMFR	0	Oxidation (M)	1406.6323	0.6322563	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	35.152	34.65	3	0.0076533	29265	160511_QHF_FH_JSI12i_3	51.879	48.985			0.68622	0.82338	46.059	3	1	Median	NaN	NaN	NaN	0	0	Median	0.68622	0.82338	NaN	1	0	Median	0.658	0.64491	NaN	1	1	Median	1.5171	1.5726	NaN	1	0	Median	133920000	69055000	64862000	0	0	0	53012000	32975000	20038000	42017000	22905000	19112000	38889000	13176000	25713000	29988	2265	28374	186016;186017;186018	251334;251335;251336	251336		1870	2	
LETLGIGQR	0	Unmodified	985.55564	0.55564418	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	2	2	42.681	38.574	2	1.1164E-05	33879	160511_QHF_FH_JSI9i_2	111.01	50.22			0.94218	1.1004	36.064	6	2	Plateau	1.3047	1.1479	NaN	1	0	Median	0.87966	1.0832	NaN	1	0	Median	1.2008	1.2023	34.784	2	1	Median	1.6267	1.8011	51.157	2	1	Median	885000000	425340000	459660000	129070000	61639000	67432000	187560000	100880000	86684000	274770000	136450000	138310000	293600000	126370000	167230000	29989	5160	28375	186019;186020;186021;186022;186023;186024	251337;251338;251339;251340;251341;251342;251343	251338			7	
LETLPEEMGDMQK	1	Unmodified	1519.6898	0.68983076	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	58.809	58.153	2	8.7345E-05	52726	160511_QHF_FH_JSI11i_1	73.885	58.346			0.93754	0.95555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93754	0.95555	NaN	1	0	Median	32436000	14696000	17740000	0	0	0	0	0	0	0	0	0	32436000	14696000	17740000	29990	4226	28376	186025;186026	251344;251345	251344			1	
LETLTNQFSDSK	1	Unmodified	1381.6725	0.67252444	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	45.648	45.155	2	0.00012194	40956	160511_QHF_FH_JSI12i_1	97.214	85.621			1.4976	1.4625	9.991	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4976	1.7855	NaN	1	1	Median	1.6492	1.6022	NaN	1	1	Median	1.423	1.4625	NaN	1	0	Median	358840000	154830000	204010000	0	0	0	132170000	60560000	71610000	125270000	51636000	73634000	101400000	42637000	58768000	29991	3395	28377	186027;186028;186029;186030	251346;251347;251348;251349;251350	251347			5	
LETLVRK	1	Unmodified	857.53345	0.53345218	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		16.967	16.429	3	0.0043842	13405	160511_QHF_FH_JSI11i_3	60.799	16.078			0.81903	0.8462	130.13	2	2	Median	NaN	NaN	NaN	0	0	Median	0.29234	0.33716	NaN	1	1	Median	2.2946	2.1238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	156530000	74704000	81828000	0	0	0	68201000	34295000	33905000	88332000	40408000	47923000	0	0	0	29992	2587	28378	186031;186032	251351;251352	251351			2	
LETNEFQQLQSK	1	Unmodified	1463.7256	0.72562264	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	48.646	47.857	2	1.4477E-11	43481	160511_QHF_FH_JSI12i_1	201.6	160.06			0.55845	0.61539	32.523	6	6	Median	0.55154	0.45968	48.693	2	2	Median	0.60003	0.71749	26.45	2	2	Median	0.52453	0.51224	NaN	1	1	Median	0.59456	0.63638	NaN	1	1	Median	1756900000	1238200000	518690000	497170000	357860000	139310000	422580000	289000000	133580000	467020000	325860000	141160000	370120000	265470000	104650000	29993	3203	28379	186033;186034;186035;186036;186037;186038	251353;251354;251355;251356;251357;251358	251354			6	
LETNLRK	1	Unmodified	872.50797	0.50796571	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	5.6	5.2			4						1	2	1	1	1	12.588	10.855	3	0.0033772	8810	160511_QHF_FH_JSI11i_3	62.717	9.1629			0.9523	0.77975	62.671	5	2	Median	1.6292	1.3787	80.605	2	1	Median	0.44444	0.50417	NaN	1	1	Median	1.1112	1.0819	NaN	1	0	Median	0.56235	0.5834	NaN	1	0	Median	1454500000	745780000	708730000	347340000	183280000	164060000	476920000	243120000	233800000	515480000	246810000	268670000	114770000	72572000	42202000	29994	4575	28380	186039;186040;186041;186042;186043	251359;251360;251361;251362;251363	251359			5	
LETNPDIKPSNVEPMEK	2	Unmodified	1939.9561	0.95609286	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				46.742	45.517	3	0.044088	40479	160511_QHF_FH_JSI9i_1	32.511	15.625			1.0565	0.89292	NaN	1	1	Median	1.0565	0.89292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30803000	13540000	17263000	30803000	13540000	17263000	0	0	0	0	0	0	0	0	0	29995	4481	28381	186044	251364	251364			1	
LETSEFFELTSEEK	1	Unmodified	1687.7829	0.78286275	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.26	80.101	2	1.0212E-05	72705	160511_QHF_FH_JSI10i_1	85.845	36.345			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29996	5330	28382	186045	251365	251365			1	
LETTSNQDNLAPITAK	1	Unmodified	1714.8737	0.87374344	1221	P23229	ITGA6	Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.39	44.967	2	0.0077276	40434	160511_QHF_FH_JSI10i_1	48.659	29.914			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29997	1221	28383	186046	251366	251366			1	
LETVDPTYIFHPR	0	Unmodified	1586.8093	0.80929269	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.896	73.027	3	0.0015155	63983	160511_QHF_FH_JSI11i_2	52.576	47.946			1.0516	1.0714	5.9663	4	0	Median	1.2543	1.0754	NaN	1	0	Median	0.82111	1.0058	NaN	1	0	Median	1.168	1.1631	NaN	1	0	Median	0.94683	1.0674	NaN	1	0	Median	124400000	60890000	63510000	20293000	8073500	12220000	31673000	18061000	13612000	42896000	18382000	24514000	29537000	16373000	13164000	29998	647	28384	186047;186048;186049;186050	251367;251368;251369;251370;251371;251372;251373;251374	251372			8	
LETVGSIFSR	0	Unmodified	1107.5924	0.59242362	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		60.965	60.098	2	0.00044464	53310	160511_QHF_FH_JSI10i_2	74.376	22.522			1.0181	1.2471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0181	1.2471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129920000	68002000	61919000	0	0	0	129920000	68002000	61919000	0	0	0	0	0	0	29999	5591	28385	186051;186052	251375;251376	251376			2	
LEVAAAPGTPAQPVAMSLSADK	1	Unmodified	2123.0933	0.093255043	4624	Q9H0A8	COMMD4	COMM domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			73.834	73.278	2	6.483E-07	66402	160511_QHF_FH_JSI10i_1	82.908	53.932			1.0663	1.0569	9.1137	2	2	Median	1.1759	0.99094	NaN	1	1	Median	0.96696	1.1273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23227000	16240000	6986300	8622300	5590800	3031500	14604000	10649000	3954700	0	0	0	0	0	0	30000	4624	28386	186053;186054;186055	251377;251378;251379;251380	251378			4	
LEVAPISDIIAIK	1	Unmodified	1380.8228	0.82281749	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	4	8	4							4	4	4	4	99.54	99.407	2;3	5.0549E-05	90156	160511_QHF_FH_JSI12i_1	118.4	83.682			0.87524	0.93641	14.423	16	0	Median	0.88511	0.72779	20.029	4	0	Linear	0.76426	0.88349	9.4255	4	0	Median	0.9126	0.90841	20.645	4	0	Median	0.86985	0.9628	5.7377	4	0	Median	1377700000	760860000	616790000	268560000	131400000	137160000	349980000	217310000	132660000	400100000	204030000	196070000	359010000	208120000	150900000	30001	1041	28387	186056;186057;186058;186059;186060;186061;186062;186063;186064;186065;186066;186067;186068;186069;186070;186071	251381;251382;251383;251384;251385;251386;251387;251388;251389;251390;251391;251392;251393;251394;251395;251396;251397;251398;251399;251400;251401;251402;251403;251404;251405;251406;251407;251408;251409;251410;251411;251412;251413;251414;251415;251416;251417	251394			37	
LEVAQTQAPAATGGEAAAK	1	Unmodified	1782.9112	0.91119158	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.064	35.81	2	1.1361E-23	32185	160511_QHF_FH_JSI11i_1	137.8	100.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30002	3405	28388	186072	251418	251418			1	
LEVDIPLVK	1	Unmodified	1024.6168	0.61684746	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	80.203	79.569	2	0.00093332	72082	160511_QHF_FH_JSI10i_1	80.438	55.515			1.0779	1.033	10.976	8	0	Median	1.1447	0.9829	4.2021	2	0	Median	0.72965	0.86646	6.1386	2	0	Median	1.0792	1.0702	2.1716	2	0	Median	1.0422	1.1247	1.136	2	0	Median	514900000	269650000	245250000	82365000	38187000	44177000	164770000	99302000	65472000	145240000	74947000	70297000	122520000	57214000	65302000	30003	2084	28389	186073;186074;186075;186076;186077;186078;186079;186080	251419;251420;251421;251422;251423;251424;251425;251426;251427;251428;251429;251430;251431;251432	251425			14	
LEVDQELSNGFK	1	Unmodified	1377.6776	0.67760981	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.853	60.211	2	2.2892E-05	54609	160511_QHF_FH_JSI11i_1	132.25	90.059			0.71041	0.6518	47.492	4	3	Median	0.71132	0.57898	NaN	1	1	Median	0.7095	0.84381	NaN	1	1	Median	0.79117	0.73377	NaN	1	1	Median	0.27775	0.28954	NaN	1	0	Median	237680000	136760000	100920000	48310000	24781000	23529000	74927000	39248000	35678000	68359000	37904000	30455000	46089000	34829000	11260000	30004	2906	28390	186081;186082;186083;186084	251433;251434;251435;251436;251437	251433			5	
LEVEANNAFDQYR	0	Unmodified	1567.7267	0.72668527	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0	By MS/MS		By matching		1	0	2									1		1		56.393	55.61	2	2.5297E-05	49428	160511_QHF_FH_JSI9i_1	119.76	83.43			0.95547	0.85844	26.109	2	0	Median	1.2619	1.0325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72347	0.71373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	165060000	85811000	79251000	72781000	36864000	35917000	0	0	0	92281000	48947000	43334000	0	0	0	30005	1607	28391	186085;186086	251438;251439	251439			2	
LEVEKAFHPFIAGPYNR	1	Acetyl (K)	2029.0421	0.042146171	2147	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.475	73.161	3	0.00045243	40330	160513_QHF_FH_JSI11Kac_6	98.035	67.492			0.094909	0.091222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.094909	0.091222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46683000	45042000	1640300	0	0	0	0	0	0	46683000	45042000	1640300	0	0	0	30006	2147	28392	186087	251440	251440	2251		1	
LEVIIPERYPFEPPQIR	0	Unmodified	2095.1466	0.14661124	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	93.477	93.193	3	6.9474E-06	83091	160511_QHF_FH_JSI11i_3	95.347	80.425			1.0196	1.1231	30.633	7	1	Median	1.6594	1.4703	NaN	1	0	Median	1.0525	1.2587	15.088	2	0	Median	1.0273	0.99619	16.956	2	0	Median	0.78549	0.78257	39.259	2	1	Median	318650000	174580000	144070000	48429000	17552000	30877000	71647000	41650000	29996000	101860000	59872000	41991000	96708000	55502000	41206000	30007	4896	28393	186088;186089;186090;186091;186092;186093;186094;186095	251441;251442;251443;251444;251445;251446;251447;251448;251449;251450;251451;251452;251453	251443			13	
LEVLDSTK	1	Unmodified	903.49131	0.49131259	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	32.945	32.342	2	0.017919	29245	160511_QHF_FH_JSI12i_1	48.157	3.0761			1.033	0.9928	7.7866	4	0	Median	1.2396	1.0116	NaN	1	0	Median	0.81265	0.97435	NaN	1	0	Median	1.164	1.1459	NaN	1	0	Median	0.91672	0.97018	NaN	1	0	Median	472760000	225540000	247210000	125280000	58125000	67160000	127940000	67475000	60468000	110720000	47646000	63079000	108800000	52295000	56508000	30008	1611	28394	186096;186097;186098;186099	251454;251455	251455			2	
LEVNLQAMK	1	Unmodified	1044.5638	0.56376603	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.211	55.704	2	0.010922	48297	160511_QHF_FH_JSI11i_2	58.815	23.459			0.76999	0.76449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76999	0.76449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29186000	16664000	12521000	0	0	0	0	0	0	29186000	16664000	12521000	0	0	0	30009	1436	28395	186100	251456	251456			1	
LEVPDMNIR	0	Unmodified	1085.5539	0.55392962	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	61.738	61.03	2	0.015482	55078	160511_QHF_FH_JSI10i_1	54.436	26.262			1.7526	0.48969	81.761	3	1	Plateau	1.879	1.5586	NaN	1	0	Median	1.7526	2.0314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43099	0.4399	NaN	1	0	Median	276030000	113600000	162440000	56890000	26003000	30887000	153090000	50981000	102110000	0	0	0	66055000	36614000	29441000	30010	2286	28396	186101;186102;186103;186104	251457;251458;251459	251458			3	
LEVPDMNIRGPK	1	Unmodified	1367.7231	0.72312022	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	55.409	55.288	3	0.0028697	47478	160511_QHF_FH_JSI12i_3	51.875	31.035			1.3089	1.2708	0.4313	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3426	1.2669	NaN	1	0	Median	1.2759	1.2747	NaN	1	0	Median	185380000	76293000	109090000	0	0	0	0	0	0	109430000	44828000	64603000	75952000	31465000	44488000	30011	2286	28397	186105;186106	251460;251461;251462	251461			3	
LEVQAEEERK	1	Unmodified	1229.6252	0.62518031	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.539	1	7	2							2	2	3	3	15.606	15.175	2;3	2.4688E-05	12077	160511_QHF_FH_JSI11i_2	97.813	59.727			0.73041	0.74541	40.57	9	2	Median	0.84568	0.71151	NaN	1	0	Median	0.54497	0.66877	15.344	2	1	Median	0.73041	0.76758	51.958	3	1	Median	0.83739	0.89366	32.405	3	0	Plateau	766810000	430230000	336580000	75361000	38952000	36409000	150900000	84029000	66873000	248220000	153670000	94556000	292320000	153580000	138740000	30012	4686	28398	186107;186108;186109;186110;186111;186112;186113;186114;186115;186116	251463;251464;251465;251466;251467;251468;251469	251466			7	
LEVQATDREENK	1	Unmodified	1430.7001	0.70013617	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	15.692	15.12	2;3	0.0017065	12226	160511_QHF_FH_JSI12i_2	104.22	43.785			0.40595	0.44759	5.2197	4	4	Median	0.56622	0.47561	NaN	1	1	Median	0.35161	0.43557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40595	0.44144	5.8074	2	2	Median	150720000	111040000	39678000	22820000	13668000	9152000	87225000	66359000	20866000	0	0	0	40671000	31011000	9659500	30013	998	28399	186117;186118;186119;186120	251470;251471;251472;251473;251474	251470			5	
LEVSLTLTNK	1	Unmodified	1116.639	0.63903946	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			33.148	31.748	3	0.058617	26589	160511_QHF_FH_JSI10i_3	14.461	6.8151			0.94082	1.0653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94082	1.0653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	740910000	355870000	385040000	0	0	0	740910000	355870000	385040000	0	0	0	0	0	0	30014	3340	28400	186121	251475	251475			1	
LEVTEIVKPSPK	2	Unmodified	1338.7759	0.7758673	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	49.269	49.031	3	0.0086335	41913	160511_QHF_FH_JSI12i_3	43.03	20.984			0.79264	0.79934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79264	0.79934	NaN	1	1	Median	107240000	49750000	57487000	0	0	0	0	0	0	0	0	0	107240000	49750000	57487000	30015	3285	28401	186122;186123;186124	251476;251477;251478	251478			3	
LEVTWDDTK	1	Unmodified	1105.5292	0.52915466	3651	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.32	37.949	2	0.017661	33926	160511_QHF_FH_JSI10i_1	42.869	6.1681			1.3632	1.5807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3632	1.5807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102290000	49915000	52378000	0	0	0	102290000	49915000	52378000	0	0	0	0	0	0	30016	3651	28402	186125	251479	251479			1	
LEWFSTLFPR	0	Unmodified	1294.671	0.67100829	2987	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	101.39	101.32	2	0.0019462	83864	160511_QHF_FH_JSI10i_3	62.823	36.439			0.85408	0.93849	35.402	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61526	0.73066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1856	1.2054	NaN	1	0	Median	242450000	132390000	110070000	0	0	0	93661000	56427000	37234000	0	0	0	148790000	75960000	72834000	30017	2987	28403	186126;186127	251480	251480			1	
LEWLTLMPNASNLDK	1	Unmodified	1743.8866	0.88655673	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		101.1	101.01	2	9.0115E-52	89481	160511_QHF_FH_JSI10i_2	262.56	208.88			0.83781	0.76864	5.7149	3	0	Median	0.90991	0.76864	NaN	1	0	Median	0.63022	0.76354	NaN	1	0	Median	0.83781	0.84565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	265210000	140460000	124740000	61232000	26087000	35145000	90518000	55009000	35509000	113460000	59368000	54090000	0	0	0	30018	6	28404	186128;186129;186130	251481;251482;251483;251484	251484			4	
LEWSPVHK	1	Unmodified	994.52362	0.52361577	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			35.794	34.834	3	0.010614	30449	160511_QHF_FH_JSI9i_2	41.029	24.191			0.84938	1.0516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84938	1.0516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21599000	11281000	10318000	0	0	0	21599000	11281000	10318000	0	0	0	0	0	0	30019	5321	28405	186131;186132	251485;251486	251485			2	
LEWVYGYR	0	Unmodified	1084.5342	0.53418046	737;131	O95834;O00423	EML2;EML1	Echinoderm microtubule-associated protein-like 2;Echinoderm microtubule-associated protein-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	15.8	0.433								1	3	1	2		1	69.621	60.409	2	0.00030517	32024	160513_QHF_FH_JSI9Kac_6	116.3	93.408			0.89644	1.0223	7.2505	4	0	Median	1.3672	1.1587	NaN	1	0	Median	0.87302	1.0223	0.70915	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91572	0.98021	NaN	1	0	Median	176850000	85990000	90862000	31219000	10639000	20580000	102260000	54194000	48065000	0	0	0	43375000	21157000	22218000	30020	737;131	28406	186133;186134;186135;186136	251487;251488;251489;251490	251487			4	
LEYDDLRR	0	Unmodified	1078.5407	0.5407224	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			28.38	27.458	2	0.010563	23996	160511_QHF_FH_JSI10i_2	60.76	27.209			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30021	1085	28407	186137	251491	251491			1	
LEYGDNAEK	1	Unmodified	1037.4666	0.46655441	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	17.729	14.339	2	3.081E-05	12312	160511_QHF_FH_JSI10i_1	102.07	102.07			1.0014	1.1067	10.567	7	1	Median	1.4529	1.1831	NaN	1	0	Median	0.93605	1.0988	10.443	2	0	Median	1.0649	1.0334	9.6849	2	1	Median	1.0373	1.1106	18.332	2	0	Median	1793700000	858670000	935000000	433950000	193820000	240130000	553510000	285780000	267730000	333450000	155030000	178420000	472750000	224030000	248720000	30022	5486	28408	186138;186139;186140;186141;186142;186143;186144	251492;251493;251494;251495;251496;251497;251498;251499;251500;251501;251502;251503	251498			12	
LEYGDNAEKYK	2	Acetyl (K)	1370.6354	0.63541065	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		43.133	33.923	2	1.4368E-05	19256	160513_QHF_FH_JSI11Kac_3	109.42	81.406			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30023	5486	28409	186145	251504	251504	3448		1	
LEYGGLGR	0	Unmodified	863.45012	0.45011648	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	32.306	31.614	2	0.0078799	26750	160511_QHF_FH_JSI11i_2	58.167	33.169			0.88289	1.0062	22.271	7	0	Median	1.5633	1.3348	NaN	1	0	Median	0.81844	0.98127	14.114	2	0	Median	1.1415	1.1526	19.203	2	0	Median	0.77152	0.82685	21.79	2	0	Median	2899500000	1408300000	1491300000	449280000	165740000	283540000	697110000	347990000	349120000	1204400000	618800000	585610000	548730000	275730000	273000000	30024	4027	28410	186146;186147;186148;186149;186150;186151;186152	251505;251506;251507;251508	251506			4	
LEYHQVIQQMEQK	1	Unmodified	1672.8243	0.82429083	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							1	2	4	4	56.169	55.541	2;3	1.5791E-07	48789	160511_QHF_FH_JSI9i_2	107.46	97.408			0.84918	0.8201	21.246	8	3	Median	0.90137	0.78284	NaN	1	0	Median	0.63002	0.76959	NaN	1	0	Median	0.85793	0.84543	26.485	4	3	Median	0.91522	0.97102	23.321	2	0	Median	911170000	444390000	466780000	78076000	37201000	40875000	128130000	61919000	66208000	424790000	225710000	199080000	280170000	119560000	160620000	30025	2100	28411	186153;186154;186155;186156;186157;186158;186159;186160;186161;186162;186163	251509;251510;251511;251512;251513;251514;251515;251516;251517;251518;251519;251520;251521;251522;251523;251524	251515			16	
LEYLSLVSK	1	Unmodified	1050.5961	0.59611202	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		76.098	65.433	2	0.0088664	34857	160513_QHF_FH_JSI11Kac_5	71.501	43.327			0.75306	0.73931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75306	0.73931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2917600	1538300	1379300	0	0	0	0	0	0	2917600	1538300	1379300	0	0	0	30026	2544	28412	186164	251525	251525			1	
LFAANYMMNVIEVDSAHYK	1	Unmodified	2215.0442	0.044196361	3719	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	1	2	95.789	93.368	3	4.066E-08	87087	160511_QHF_FH_JSI11i_3	101.67	93.676			1.0309	1.0307	20.978	4	2	Median	NaN	NaN	NaN	0	0	Median	1.14	1.3808	NaN	1	1	Median	1.1487	1.0868	NaN	1	0	Median	0.88789	0.90517	10.86	2	1	Median	99105000	51392000	47714000	0	0	0	5642900	1971000	3671900	25797000	13093000	12704000	67666000	36328000	31338000	30027	3719	28413	186165;186166;186167;186168	251526;251527;251528;251529;251530	251526			5	
LFAAYNEGIINLLEK	1	Unmodified	1706.9243	0.92432245	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		2	2						1	1	1	1	2	99.535	97.623	2	3.0735E-65	90332	160511_QHF_FH_JSI11i_3	227.31	170.75			0.79277	0.85262	26.574	5	0	Median	0.70958	0.60909	NaN	1	0	Median	0.7034	0.85262	NaN	1	0	Median	1.2929	1.2218	NaN	1	0	Median	0.91305	0.95109	16.66	2	0	Median	918890000	477780000	441110000	108410000	62417000	45991000	141790000	83166000	58623000	228600000	119450000	109140000	440100000	212750000	227350000	30028	2425	28414	186169;186170;186171;186172;186173	251531;251532;251533;251534;251535	251531			5	
LFADAEEEQRR	0	Unmodified	1362.6528	0.65279205	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							3	2	3	1	19.311	18.857	2;3	1.5525E-05	15745	160511_QHF_FH_JSI11i_3	75.416	62.919			0.98805	0.95648	17.419	8	2	Median	1.2692	1.0925	30.305	2	1	Median	0.79686	0.97861	11.356	2	0	Median	1.043	0.96125	1.0737	3	0	Median	0.68189	0.73221	NaN	1	1	Median	495340000	253630000	241710000	130180000	54156000	76025000	143950000	79706000	64248000	173520000	89422000	84102000	47678000	30345000	17333000	30029	1586	28415	186174;186175;186176;186177;186178;186179;186180;186181;186182	251536;251537;251538;251539;251540;251541;251542;251543;251544;251545;251546	251537			11	
LFADAVQELLPQYK	1	Unmodified	1633.8716	0.87155859	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.576	1	8	4							3	2	3	5	94.625	94.245	2;3	2.2639E-21	82715	160511_QHF_FH_JSI11i_2	174.42	139.67			1.1164	1.0736	28.962	12	1	Median	1.2568	1.0918	7.1205	3	1	Median	0.78351	0.95104	12.43	2	0	Median	1.0205	1.0337	2.2326	3	0	Plateau	0.93103	1.0608	36.097	4	0	Linear	781240000	411530000	369710000	164140000	86948000	77195000	149580000	87298000	62284000	262260000	122360000	139900000	205260000	114920000	90334000	30030	1411	28416	186183;186184;186185;186186;186187;186188;186189;186190;186191;186192;186193;186194;186195	251547;251548;251549;251550;251551;251552;251553;251554;251555;251556;251557;251558;251559;251560;251561;251562;251563;251564;251565;251566;251567;251568;251569;251570;251571;251572;251573	251563			24	
LFAEAVQK	1	Unmodified	904.50182	0.5018177	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	5.02	5	5	7				1	3		5	4	5	7	30.899	28.479	2	0.0011596	24775	160511_QHF_FH_JSI9i_2	111.04	64.665			0.91908	0.96509	64.598	21	13	Median	1.8516	1.514	80.707	5	5	Median	0.5752	0.68929	53.227	4	2	Median	1.1177	1.1024	69.477	5	2	Median	0.91908	1.006	59.657	7	4	Median	7781300000	3729900000	4051400000	2240500000	859730000	1380800000	1628500000	838730000	789790000	2206900000	1089900000	1117000000	1705400000	941520000	763830000	30031	1372	28417	186196;186197;186198;186199;186200;186201;186202;186203;186204;186205;186206;186207;186208;186209;186210;186211;186212;186213;186214;186215;186216	251574;251575;251576;251577;251578;251579;251580;251581;251582;251583;251584;251585;251586;251587;251588;251589;251590;251591;251592;251593;251594;251595	251589			22	
LFAECHVINPSK	1	Unmodified	1413.7075	0.70747015	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	37.429	37.266	2	0.00088026	31679	160511_QHF_FH_JSI12i_3	77.744	61.52			4.009	4.3633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.009	4.3633	NaN	1	1	Median	10446000	3169400	7276700	0	0	0	0	0	0	0	0	0	10446000	3169400	7276700	30032	5641	28418	186217	251596	251596			1	
LFAELEIK	1	Unmodified	961.54843	0.54843354	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	64.653	63.581	2	0.0226	54513	160511_QHF_FH_JSI12i_2	43.808	23.526			1.0887	1.2494	22.859	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1942	1.4685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99251	1.0629	NaN	1	0	Median	64120000	31680000	32439000	0	0	0	23667000	11473000	12193000	0	0	0	40453000	20207000	20246000	30033	587	28419	186218;186219	251597;251598	251597			2	
LFAIIVGR	0	Unmodified	887.55927	0.559273	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	74.371	65.964	2	0.056994	34560	160513_QHF_FH_JSI12Kac_6	42.474	19.165			0.69396	0.77889	41.842	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88828	1.0471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54215	0.57941	NaN	1	0	Median	452270000	253030000	199230000	0	0	0	367650000	211590000	156060000	0	0	0	84621000	41449000	43173000	30034	4039	28420	186220;186221	251599	251599			1	
LFAKPPPVIK	2	Unmodified	1108.7009	0.70085186	3457	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	43.532	43.3	3	0.0029441	35799	160511_QHF_FH_JSI9i_3	52.278	40.065			0.82635	0.81811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82635	0.81811	NaN	1	1	Median	125980000	64592000	61392000	0	0	0	0	0	0	0	0	0	125980000	64592000	61392000	30035	3457	28421	186222;186223;186224	251600;251601;251602	251601			3	
LFALEFAR	0	Unmodified	965.53345	0.53345218	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	73.15	72.571	2	0.0070325	62868	160511_QHF_FH_JSI12i_3	60.76	39.46			0.47124	0.51947	7.1938	3	0	Median	NaN	NaN	NaN	0	0	Median	0.46088	0.51947	NaN	1	0	Median	0.48152	0.46001	NaN	1	0	Median	0.47124	0.52254	NaN	1	0	Median	160880000	109470000	51409000	0	0	0	31336000	22178000	9158000	55760000	39950000	15810000	73788000	47347000	26441000	30036	3489	28422	186225;186226;186227	251603;251604	251603			2	
LFALHASQFSTCLLDNYVSLFEVLLK	1	Unmodified	3027.578	0.57796612	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.71	94.252	3	2.4811E-111	53640	160513_QHF_FH_JSI9Kac_6	237.97	225.03			1.2617	1.2899	6.2275	2	0	Median	1.5479	1.348	NaN	1	0	Median	1.0284	1.2343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	784290000	344470000	439830000	294100000	114440000	179660000	490200000	230030000	260170000	0	0	0	0	0	0	30037	2094	28423	186228;186229	251605;251606;251607;251608	251605			4	
LFALVLR	0	Unmodified	830.53781	0.53780928	5385	Q9UL03;Q5JSJ4	INTS6;DDX26B	Integrator complex subunit 6;Protein DDX26B	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	78.008	68.882	2	0.029132	37686	160513_QHF_FH_JSI11Kac_6	62.338	11.302			1.4308	1.222	22.664	3	0	Plateau	1.4389	1.222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2284	1.2263	NaN	1	0	Median	0.77051	0.82671	NaN	1	0	Median	95429000	41514000	53915000	42682000	15839000	26843000	0	0	0	34841000	16197000	18644000	17906000	9477300	8428300	30038	5385	28424	186230;186231;186232	251609	251609			1	
LFALVLTPTR	0	Unmodified	1129.6859	0.68593008	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.96			4					3	5	3	4	3	2	81.358	75.241	2	9.8632E-10	40972	160513_QHF_FH_JSI10Kac_6	133.86	102.63			0.87443	0.91851	90.837	11	3	Median	0.97462	0.82761	7.6242	3	1	Median	0.79966	0.95002	3.6006	3	1	Median	1.0936	1.0667	171.47	3	0	Median	0.91841	0.9633	20.735	2	1	Median	2518900000	1193400000	1325400000	710060000	381040000	329010000	1100200000	629580000	470650000	388390000	29940000	358450000	320210000	152880000	167330000	30039	4640	28425	186233;186234;186235;186236;186237;186238;186239;186240;186241;186242;186243;186244	251610;251611;251612;251613;251614;251615;251616;251617;251618;251619;251620;251621;251622;251623;251624;251625;251626	251624			17	
LFAMEFVK	1	Unmodified	983.51502	0.51502492	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.0654	5.0654	3	0.010765	2722	160511_QHF_FH_JSI11i_3	33.797	5.7837			1.1165	1.0511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1165	1.0511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1126600000	539580000	586990000	0	0	0	0	0	0	1126600000	539580000	586990000	0	0	0	30040	3429	28426	186245	251627	251627			1	
LFAPQQILQCSPAN	0	Unmodified	1585.7923	0.79226242	809	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	82.667	82.155	2	0.0083027	74818	160511_QHF_FH_JSI12i_1	63.283	56.624			1.12	1.1648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.12	1.1648	NaN	1	0	Median	19590000	9966200	9624000	0	0	0	0	0	0	0	0	0	19590000	9966200	9624000	30041	809	28427	186246	251628	251628			1	
LFAQLAGDDMEVSATELMNILNK	1	Unmodified	2522.2397	0.23966128	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	102.53	102.46	3	1.001E-31	90231	160511_QHF_FH_JSI11i_2	183.06	154.29			0.86902	0.8689	20.961	5	0	Median	1.1948	1.0539	NaN	1	0	Median	0.67733	0.81456	NaN	1	0	Median	0.86902	0.8689	NaN	1	0	Median	0.98838	1.0378	34.349	2	0	Median	612040000	314390000	297650000	101080000	45871000	55205000	119510000	72704000	46806000	241420000	130880000	110540000	150030000	64931000	85099000	30042	813	28428	186247;186248;186249;186250;186251	251629;251630;251631;251632;251633	251631			5	
LFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRK	1	Unmodified	4096.029	0.029021888	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.57	0.495		3	4							4	3			100.67	100.53	3;4	1.0233E-72	83188	160511_QHF_FH_JSI10i_3	173.81	169.46			1.1485	1.1442	10.18	5	2	Median	1.2438	1.0287	13.531	3	1	Plateau	0.92509	1.0962	6.7472	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	589210000	284630000	304580000	253410000	102890000	150520000	335790000	181740000	154060000	0	0	0	0	0	0	30043	1372	28429	186252;186253;186254;186255;186256;186257;186258	251634;251635;251636;251637;251638;251639;251640;251641;251642;251643	251635			9	
LFAVVHFASR	0	Unmodified	1145.6346	0.63456321	3251	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	63.788	54.674	2;3	6.5419E-07	30007	160513_QHF_FH_JSI10Kac_6	98.04	80.528			1.0595	0.97142	53.699	9	2	Median	1.2456	1.0843	22.078	2	0	Median	0.80855	0.94913	15.186	3	0	Median	1.9928	1.8913	70.567	2	1	Median	1.4637	1.5276	93.89	2	1	Median	2205400000	1052600000	1152800000	437720000	201690000	236020000	1395600000	673780000	721830000	227540000	88546000	139000000	144500000	88571000	55934000	30044	3251	28430	186259;186260;186261;186262;186263;186264;186265;186266;186267;186268	251644;251645;251646;251647;251648;251649;251650;251651;251652;251653;251654;251655;251656;251657;251658;251659	251656			16	
LFAYPDTHR	0	Unmodified	1118.5509	0.55089316	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	5	4	3	3	32.722	29.582	2;3	1.1404E-06	25291	160511_QHF_FH_JSI11i_3	117.89	100.07			1.1261	1.1711	14.436	14	1	Median	1.3844	1.1339	18.498	4	1	Median	1.1009	1.2956	18.388	4	0	Median	1.1519	1.0602	12.507	3	0	Median	1.0769	1.1564	6.3962	3	0	Median	2082800000	981480000	1101300000	257440000	99883000	157560000	425220000	201610000	223610000	501280000	227330000	273940000	898870000	452650000	446220000	30045	800	28431	186269;186270;186271;186272;186273;186274;186275;186276;186277;186278;186279;186280;186281;186282;186283	251660;251661;251662;251663;251664;251665;251666;251667;251668;251669;251670;251671;251672;251673;251674;251675;251676;251677;251678;251679	251660			20	
LFCIPVHGIR	0	Unmodified	1210.6645	0.66448313	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	61.05	60.912	3	0.0015795	52488	160511_QHF_FH_JSI12i_3	40.994	37.321			0.71075	0.67873	30.928	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60396	0.54541	NaN	1	0	Median	0.83642	0.84465	NaN	1	0	Median	83996000	52860000	31136000	0	0	0	0	0	0	48529000	30924000	17605000	35466000	21935000	13531000	30046	1317	28432	186284;186285	251680;251681;251682;251683	251683			4	
LFCLHPTK	1	Unmodified	1014.5321	0.53207197	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	31.141	30.406	3	0.0040562	25417	160511_QHF_FH_JSI12i_3	57.859	43.185			0.96427	0.89271	31.886	2	2	Median	0.86305	0.71251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0774	1.1185	NaN	1	1	Median	186490000	97624000	88861000	70070000	46387000	23683000	0	0	0	0	0	0	116420000	51237000	65179000	30047	4152	28433	186286;186287;186288	251684;251685;251686	251686			3	
LFCLTLHR	0	Unmodified	1058.5695	0.56952011	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	3	1	1	59.472	51.736	3	4.7595E-08	27480	160513_QHF_FH_JSI9Kac_6	144.38	110.58			0.90454	1.0449	34.296	5	1	Median	1.551	1.3524	NaN	1	0	Median	0.67575	0.79382	38.86	2	1	Median	0.90454	0.85023	NaN	1	0	Median	1.2699	1.3619	NaN	1	0	Median	273100000	136810000	136290000	37231000	17435000	19796000	139920000	74323000	65598000	53035000	26499000	26536000	42914000	18554000	24359000	30048	3860	28434	186289;186290;186291;186292;186293;186294	251687;251688;251689;251690;251691;251692;251693;251694	251691			8	
LFCVGFTK	1	Unmodified	970.49462	0.49462383	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.34			3					1	2	2	2	1	1	61.68	56.38	2	0.0014638	31062	160513_QHF_FH_JSI10Kac_6	98.997	44.471			1.3255	1.2958	8.09	6	0	Median	1.578	1.2915	16.933	2	0	Median	1.1129	1.2958	2.9364	2	0	Median	1.3162	1.2342	NaN	1	0	Median	1.3349	1.3353	NaN	1	0	Median	2516800000	1057100000	1459700000	256180000	103870000	152310000	634280000	261780000	372500000	201330000	85895000	115440000	1425000000	605510000	819440000	30049	1948	28435	186295;186296;186297;186298;186299;186300	251695;251696;251697;251698;251699;251700	251700			6	
LFCVGFTKK	2	Unmodified	1098.5896	0.58958685	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			6							2	2	2		27.842	26.944	2;3	0.017746	23093	160511_QHF_FH_JSI11i_3	42.914	25.006			0.50413	0.48471	79.29	6	0	Median	0.67553	0.55821	84.297	2	0	Median	0.72277	0.82259	10.467	2	0	Median	0.19649	0.1851	16.203	2	0	Median	NaN	NaN	NaN	0	0	Median	347380000	239320000	108060000	98819000	58284000	40536000	92401000	55869000	36532000	156160000	125160000	30995000	0	0	0	30050	1948	28436	186301;186302;186303;186304;186305;186306	251701;251702	251702			2	
LFCVGFTKK	2	Acetyl (K)	1140.6002	0.60015154	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	70.763	61.178	2	0.038106	32004	160513_QHF_FH_JSI12Kac_6	69.598	47.45			0.72445	0.73543	87.751	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41359	0.39542	NaN	1	0	Median	1.2689	1.3678	NaN	1	0	Median	43121000	27733000	15388000	0	0	0	0	0	0	27551000	20280000	7270600	15570000	7452800	8117600	30051	1948	28436	186307;186308	251703;251704	251704			2	
LFDAPEAPLPSRK	1	Unmodified	1439.7773	0.77726428	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		48.285	48.285	3	0.00097492	42559	160511_QHF_FH_JSI11i_3	55.213	49.607			0.60972	0.57187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60972	0.57187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95568000	58441000	37127000	0	0	0	0	0	0	95568000	58441000	37127000	0	0	0	30052	1535	28437	186309;186310	251705;251706	251705			2	
LFDATLTQYVK	1	Unmodified	1297.6918	0.69180331	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	72.48	71.588	2	4.5621E-05	62738	160511_QHF_FH_JSI11i_2	113.62	89.592			1.0559	1.0839	35.885	3	1	Median	NaN	NaN	NaN	0	0	Median	1.5897	1.9209	NaN	1	1	Median	1.0559	1.0839	NaN	1	0	Median	0.88946	0.99162	NaN	1	0	Median	224490000	116180000	108300000	0	0	0	57263000	24685000	32578000	94174000	51703000	42472000	73050000	39796000	33254000	30053	2918	28438	186311;186312;186313	251707;251708	251707			2	
LFDAVNTK	1	Unmodified	906.48108	0.48108226	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.097	37.739	2	0.051162	32102	160511_QHF_FH_JSI12i_2	37.021	2.2129			0.68497	0.73597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68497	0.73597	NaN	1	0	Median	81849000	46468000	35381000	0	0	0	0	0	0	0	0	0	81849000	46468000	35381000	30054	2956	28439	186314	251709	251709			1	
LFDDDETGK	1	Unmodified	1038.4506	0.45056999	1510	P41208;Q12798	CETN2;CETN1	Centrin-2;Centrin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		21.165	20.638	2	0.010803	17770	160511_QHF_FH_JSI11i_1	49.536	48.56			0.86693	0.83329	9.5287	3	0	Median	0.99348	0.81659	NaN	1	0	Median	0.82584	0.97201	NaN	1	0	Median	0.86693	0.83329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	294500000	151990000	142510000	100390000	48786000	51602000	88600000	49983000	38617000	105510000	53220000	52290000	0	0	0	30055	1510	28440	186315;186316;186317	251710;251711;251712	251710			3	
LFDDLTSSYK	1	Unmodified	1187.571	0.57101948	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		53.344	52.933	2	0.03264	47793	160511_QHF_FH_JSI11i_1	46.819	31.157			3.4057	3.2497	128.46	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4057	3.2497	128.46	2	2	Median	NaN	NaN	NaN	0	0	Median	215230000	60050000	155180000	0	0	0	0	0	0	215230000	60050000	155180000	0	0	0	30056	2640	28441	186318;186319	251713;251714	251713			2	
LFDDSTVTTVDESQVVTR	0	Unmodified	2010.9746	0.9745797	633	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.134	62.753	2	0.00010658	56803	160511_QHF_FH_JSI10i_1	73.927	57.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30057	633	28442	186320	251715	251715			1	
LFDDVPQVR	0	Unmodified	1087.5662	0.56620887	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	49.794	48.811	2	0.013899	42106	160511_QHF_FH_JSI11i_2	45.972	31.976			1.0003	1.0631	5.3643	4	0	Median	1.1958	1.0241	NaN	1	0	Median	0.9398	1.1327	NaN	1	0	Median	1.01	1.0177	NaN	1	0	Median	0.99075	1.1036	NaN	1	0	Median	392400000	174550000	217850000	89084000	38486000	50598000	92830000	38218000	54612000	122810000	52990000	69815000	87681000	44857000	42823000	30058	3382	28443	186321;186322;186323;186324	251716;251717;251718;251719	251719			4	
LFDEEEDSSEK	1	Unmodified	1326.5463	0.54632087	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	22.611	22.129	2	5.4889E-05	19318	160511_QHF_FH_JSI12i_1	94.692	85.829			0.98343	0.97192	23.938	5	2	Median	0.95744	0.78884	NaN	1	0	Median	0.79118	0.90833	32.534	2	2	Median	0.99329	0.97192	NaN	1	0	Median	1.1983	1.2706	NaN	1	0	Median	209600000	113770000	95836000	43718000	23742000	19977000	60898000	32927000	27971000	43839000	24286000	19553000	61149000	32814000	28335000	30059	366	28444	186325;186326;186327;186328;186329	251720;251721;251722;251723;251724;251725;251726;251727	251722			8	
LFDFPGR	0	Unmodified	850.43374	0.43373813	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	54.52	53.688	2	0.012437	46059	160511_QHF_FH_JSI12i_3	69.383	60.37			1.0048	1.0405	10.147	7	2	Median	1.2154	1.0193	16.986	2	0	Median	0.80868	0.96436	14.405	2	1	Median	1.0559	1.0271	7.9394	2	1	Median	1.0048	1.0405	NaN	1	0	Median	4878500000	2428200000	2450200000	556350000	242370000	313980000	895240000	485780000	409470000	1477200000	704860000	772300000	1949700000	995230000	954480000	30060	5200	28445	186330;186331;186332;186333;186334;186335;186336	251728;251729;251730;251731;251732;251733;251734;251735;251736;251737;251738	251738			11	
LFDFVNAK	1	Unmodified	952.50182	0.5018177	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	58.474	57.556	2	0.0043669	49468	160511_QHF_FH_JSI12i_2	68.915	38.73			1.2279	1.3081	15.594	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4239	1.4606	NaN	1	1	Median	1.0589	1.1715	NaN	1	0	Median	895470000	444930000	450540000	0	0	0	0	0	0	519210000	248010000	271200000	376260000	196920000	179340000	30061	2277	28446	186337;186338	251739;251740;251741	251740			3	
LFDGTEPIVLDSLK	1	Unmodified	1545.829	0.82902508	3205	Q719H9	KCTD1	BTB/POZ domain-containing protein KCTD1	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		87.838	87.598	2	0.042006	79515	160511_QHF_FH_JSI10i_1	38.584	23.212			0.83015	0.88387	4.8375	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72684	0.85414	NaN	1	0	Median	0.94816	0.91462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47804000	28262000	19542000	0	0	0	28241000	17360000	10881000	19563000	10902000	8661400	0	0	0	30062	3205	28447	186339;186340	251742	251742			1	
LFDHAVSK	1	Unmodified	915.48142	0.48141661	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	14.89	14.922	2	0.023633	12197	160511_QHF_FH_JSI11i_3	43.083	13.745			1.5788	1.5416	15.246	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4626	1.3841	NaN	1	0	Median	1.7042	1.7171	NaN	1	1	Median	252420000	100720000	151700000	0	0	0	0	0	0	131680000	52593000	79087000	120740000	48130000	72614000	30063	418	28448	186341;186342	251743;251744	251743			2	
LFDHAVSKFGK	2	Acetyl (K)	1289.6768	0.67682195	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		56.704	46.978	2;3	0.00097645	25404	160513_QHF_FH_JSI11Kac_6	62.924	46.146			0.40508	0.39652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40508	0.39652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49290000	37380000	11910000	0	0	0	0	0	0	49290000	37380000	11910000	0	0	0	30064	418	28449	186343;186344	251745;251746;251747	251746	209		3	
LFDHPESPTPNPTEPLFLAQAEVYK	1	Unmodified	2839.4069	0.40686127	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	4.2	3	9	6						2	3	4	6	7	92.328	90.97	3;4	5.3957E-35	82194	160511_QHF_FH_JSI10i_2	177.7	175.26			0.97354	1.0517	20.691	19	5	Median	1.5087	1.2103	14.095	3	0	Median	0.92499	1.0736	8.4283	4	1	Median	0.94356	0.96854	11.33	6	3	Median	0.96249	1.0474	31.811	6	1	Median	6251600000	3073300000	3178300000	804900000	317070000	487830000	1168600000	554320000	614300000	2246700000	1228200000	1018400000	2031400000	973680000	1057800000	30065	1650	28450	186345;186346;186347;186348;186349;186350;186351;186352;186353;186354;186355;186356;186357;186358;186359;186360;186361;186362;186363;186364	251748;251749;251750;251751;251752;251753;251754;251755;251756;251757;251758;251759;251760;251761;251762;251763;251764;251765;251766;251767;251768;251769;251770;251771;251772;251773;251774;251775;251776;251777;251778;251779;251780;251781;251782;251783;251784;251785;251786;251787;251788;251789;251790;251791;251792;251793;251794	251784			46	
LFDIFSQQVATVIQSR	0	Unmodified	1850.989	0.98904797	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.43		7	8						8	5	6	6	6	97.919	94.961	2;3	9.1204E-137	87894	160511_QHF_FH_JSI12i_3	334.19	290.91			0.88539	0.91324	20.117	23	1	Median	1.3589	1.1616	23.837	5	0	Median	0.73356	0.84284	3.2598	6	0	Linear	1.0331	0.97427	18.648	6	0	Median	0.84066	0.91741	19.257	6	1	Median	7400900000	3792100000	3608900000	1030700000	443030000	587710000	1947500000	1178500000	768970000	2256400000	997140000	1259300000	2166300000	1173400000	992920000	30066	4212	28451	186365;186366;186367;186368;186369;186370;186371;186372;186373;186374;186375;186376;186377;186378;186379;186380;186381;186382;186383;186384;186385;186386;186387	251795;251796;251797;251798;251799;251800;251801;251802;251803;251804;251805;251806;251807;251808;251809;251810;251811;251812;251813;251814;251815;251816;251817;251818;251819;251820;251821;251822;251823;251824;251825;251826;251827;251828;251829;251830;251831;251832	251825			38	
LFDIHKQVLK	2	Acetyl (K)	1281.7445	0.74450759	1629	P48637	GSS	Glutathione synthetase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.137	57.532	3	0.017549	31197	160513_QHF_FH_JSI11Kac_6	46.73	38.029			0.028502	0.02728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.028502	0.02728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65858000	65165000	692630	0	0	0	0	0	0	65858000	65165000	692630	0	0	0	30067	1629	28452	186388	251833	251833	1641		1	
LFDLALQGLQLLSQWSAHVMEVYSWK	1	Unmodified	3061.5735	0.57354944	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	1	4			103.77	97.35	3;4	1.259E-90	57998	160513_QHF_FH_JSI10Kac_6	271.12	226.48			0.76709	0.91212	67.719	5	5	Median	0.64848	0.56977	NaN	1	1	Median	0.77216	0.91904	75.233	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1065900000	618660000	447210000	29077000	21540000	7536900	1036800000	597120000	439680000	0	0	0	0	0	0	30068	3229	28453	186389;186390;186391;186392;186393	251834;251835;251836;251837;251838	251835			5	
LFDLLNKK	2	Unmodified	989.59097	0.59096706	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	50.433	49.583	3	0.0061508	40766	160511_QHF_FH_JSI9i_3	50.607	17.766			6.0698	6.7501	22.04	4	4	Linear	6.7802	5.6583	NaN	1	1	Median	7.6814	9.348	NaN	1	1	Median	7.6578	7.3422	NaN	1	1	Median	5.8269	6.2057	NaN	1	1	Median	51131000	6759400	44372000	16087000	1798800	14288000	6879100	619510	6259500	7410600	619800	6790800	20755000	3721200	17033000	30069	4300	28454	186394;186395;186396;186397	251839;251840;251841;251842	251841			4	
LFDLVDGFAESTK	1	Unmodified	1440.7137	0.71366097	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.499	86.508	2	0.0019005	74720	160511_QHF_FH_JSI12i_2	70.977	53.113			0.51761	0.57623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51761	0.57623	NaN	1	1	Median	8838800	5646200	3192500	0	0	0	0	0	0	0	0	0	8838800	5646200	3192500	30070	1193	28455	186398	251843	251843			1	
LFDQAFGLPR	0	Unmodified	1162.6135	0.61349341	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.05	4.91	3	11	4						3	4	5	6	6	70.926	68.942	2;3	1.0242E-14	61739	160511_QHF_FH_JSI11i_3	167.33	143.9			1.0835	0.98548	18.99	21	6	Median	1.1322	0.9457	3.8037	4	0	Median	0.7797	0.92636	14.341	5	2	Median	1.101	1.0924	17.314	6	2	Median	1.0798	1.1577	22.64	6	2	Median	41405000000	19524000000	21881000000	4326100000	2075900000	2250200000	12160000000	6143300000	6017200000	15955000000	7292600000	8662600000	8963500000	4012600000	4951000000	30071	814	28456	186399;186400;186401;186402;186403;186404;186405;186406;186407;186408;186409;186410;186411;186412;186413;186414;186415;186416;186417;186418;186419	251844;251845;251846;251847;251848;251849;251850;251851;251852;251853;251854;251855;251856;251857;251858;251859;251860;251861;251862;251863;251864;251865;251866;251867;251868;251869;251870;251871;251872;251873;251874;251875;251876;251877;251878;251879;251880;251881;251882	251845			38	
LFDQPGDPLK	1	Unmodified	1128.5815	0.58152458	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.531	49.864	2	0.0021769	45296	160511_QHF_FH_JSI12i_1	74.376	53.856			1.2199	1.278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2199	1.278	NaN	1	1	Median	78695000	39068000	39627000	0	0	0	0	0	0	0	0	0	78695000	39068000	39627000	30072	4064	28457	186420	251883	251883			1	
LFDRGDFYTAHGEDALLAAR	0	Unmodified	2237.0865	0.086530182	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							3	1	1		68.733	67.544	4	0.00082908	56415	160511_QHF_FH_JSI10i_3	43.598	36.72			1.3015	1.0785	20.186	5	2	Median	1.3015	1.0607	17.483	3	1	Median	0.94889	1.0785	NaN	1	0	Median	1.7271	1.5524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	158710000	52850000	105860000	88544000	30235000	58309000	35938000	13919000	22019000	34232000	8696300	25536000	0	0	0	30073	1557	28458	186421;186422;186423;186424;186425	251884;251885;251886;251887;251888;251889;251890	251886			7	
LFDSDPITVTVPVEVSRK	1	Unmodified	2001.0783	0.078256906	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	77.868	77.735	3	2.4428E-07	69392	160511_QHF_FH_JSI11i_3	109.54	98.69			1.1996	1.1822	5.9111	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3067	1.2327	NaN	1	0	Median	1.1013	1.1338	NaN	1	0	Median	219070000	100040000	119030000	0	0	0	0	0	0	75716000	32159000	43557000	143360000	67882000	75474000	30074	981	28459	186426;186427	251891;251892;251893	251891			3	
LFDSICNNK	1	Unmodified	1109.5175	0.51754412	915;818;2049	P04899;P08754;P63096	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	32.197	31.438	2	7.637E-05	26543	160511_QHF_FH_JSI11i_2	95.815	76.112			1.1458	1.0344	44.455	7	6	Median	0.9426	0.80028	36.29	2	2	Median	1.1504	1.3856	1.8336	2	2	Median	0.88947	0.87791	13.392	2	1	Median	2.1548	2.4315	NaN	1	1	Median	830010000	373460000	456550000	121620000	61629000	59994000	253580000	108330000	145250000	324050000	156150000	167910000	130750000	47352000	83403000	30075	818;915;2049	28460	186428;186429;186430;186431;186432;186433;186434	251894;251895;251896;251897;251898;251899;251900;251901	251899			8	
LFDSLTLLASGR	0	Unmodified	1291.7136	0.71360139	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	1	3	3	3	83.333	80.46	2	4.0915E-06	74028	160511_QHF_FH_JSI11i_3	123.96	82.081			0.89419	0.89449	30.152	10	1	Median	1.4633	1.2329	NaN	1	0	Median	0.56286	0.68209	53.313	3	1	Median	1.0041	0.9687	12.524	3	0	Plateau	0.84351	0.90985	10.444	3	0	Median	1043900000	549670000	494200000	92730000	34201000	58529000	260080000	152740000	107350000	387220000	204730000	182490000	303830000	158010000	145830000	30076	5445	28461	186435;186436;186437;186438;186439;186440;186441;186442;186443;186444	251902;251903;251904;251905;251906;251907;251908;251909;251910;251911;251912;251913;251914;251915;251916;251917	251903			16	
LFDSTIADEGTWTLEDRK	1	Unmodified	2096.0062	0.006214175	3781	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	72.702	72.038	3	2.4883E-09	64385	160511_QHF_FH_JSI11i_3	137.45	121.51			1.0742	0.97861	18.589	7	3	Median	1.1857	1.0314	14.434	2	2	Median	0.7696	0.95733	NaN	1	0	Median	1.3322	1.298	27.487	2	0	Median	0.91954	0.96599	1.8364	2	1	Median	717540000	336390000	381150000	106160000	44729000	61428000	98623000	59442000	39182000	259680000	107100000	152570000	253090000	125120000	127970000	30077	3781	28462	186445;186446;186447;186448;186449;186450;186451	251918;251919;251920;251921;251922;251923;251924;251925;251926;251927;251928;251929;251930;251931	251919			14	
LFDSTTLEHQK	1	Unmodified	1317.6565	0.65648044	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.86	2	8	2				1	4		5	5	4	3	34.855	31.162	2;3	3.1319E-13	26407	160511_QHF_FH_JSI11i_2	150.08	78.574			0.98828	1.096	21.028	16	1	Median	1.0523	0.90483	29.193	4	1	Linear	0.84868	0.99972	11.581	5	0	Median	1.0333	1.0317	20.19	4	0	Median	0.95962	1.0735	10.665	3	0	Plateau	5513700000	2500100000	3013600000	954370000	385600000	568760000	1452700000	694040000	758650000	2042900000	913110000	1129700000	1063800000	507360000	556450000	30078	2391	28463	186452;186453;186454;186455;186456;186457;186458;186459;186460;186461;186462;186463;186464;186465;186466;186467;186468	251932;251933;251934;251935;251936;251937;251938;251939;251940;251941;251942;251943;251944;251945;251946;251947;251948;251949	251944			18	
LFDSTTLEHQKTFR	1	Acetyl (K)	1763.8842	0.88424855	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		63.649	54.646	3	0.00026216	29597	160513_QHF_FH_JSI11Kac_6	77.562	60.818			0.86982	0.92325	220.05	2	1	Median	NaN	NaN	NaN	0	0	Median	3.7068	4.3758	NaN	1	1	Median	0.20411	0.19479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277540000	197640000	79898000	0	0	0	34841000	12446000	22395000	242700000	185200000	57503000	0	0	0	30079	2391	28464	186469;186470	251950;251951	251950	2461		2	
LFDVLHEPFLK	1	Unmodified	1356.7442	0.74417324	888	P07992	ERCC1	DNA excision repair protein ERCC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	83.279	82.759	3	6.7704E-05	73015	160511_QHF_FH_JSI11i_2	70.488	60.437			0.90346	0.90479	25.905	6	1	Median	1.092	0.94028	NaN	1	0	Median	0.96296	1.1981	NaN	1	0	Median	1.0039	0.95695	45.768	2	0	Median	0.75725	0.79951	12.051	2	1	Median	99887000	48592000	51295000	11694000	5319500	6374800	19400000	7865500	11535000	39007000	17938000	21070000	29786000	17470000	12316000	30080	888	28465	186471;186472;186473;186474;186475;186476;186477;186478	251952;251953;251954;251955;251956;251957;251958;251959;251960;251961;251962	251958			11	
LFDWANTSR	0	Unmodified	1108.5302	0.53015772	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	50.477	49.821	2	3.5315E-05	44012	160511_QHF_FH_JSI11i_3	100.02	74.88			1.0249	1.0828	16.188	5	1	Median	NaN	NaN	NaN	0	0	Median	0.977	1.145	10.805	2	1	Median	1.2943	1.2483	20.114	2	0	Median	0.91844	0.94256	NaN	1	0	Median	1007200000	526110000	481120000	0	0	0	261430000	141930000	119510000	460360000	221580000	238780000	285430000	162600000	122830000	30081	2957;5035	28466	186479;186480;186481;186482;186483	251963;251964;251965;251966;251967;251968	251964			6	
LFDYFPK	1	Unmodified	928.46945	0.46945494	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.51	2	4	2					1	3	4	3	3	2	64.158	60.316	2	0.018889	49496	160511_QHF_FH_JSI9i_3	59.205	41.17			1.0036	0.96906	29.013	12	1	Median	1.2663	1.0372	16.087	4	0	Median	0.80603	0.96786	49.6	3	1	Plateau	0.94508	0.95201	19.681	3	0	Median	0.77719	0.8331	12.823	2	0	Median	6197700000	3184700000	3013000000	1195500000	486630000	708860000	1547500000	883870000	663620000	2059100000	999650000	1059400000	1395600000	814530000	581100000	30082	905	28467	186484;186485;186486;186487;186488;186489;186490;186491;186492;186493;186494;186495	251969;251970;251971;251972;251973;251974;251975;251976;251977;251978;251979;251980;251981;251982	251973			14	
LFDYFPKPYPNSEAAR	1	Acetyl (K)	1955.9418	0.94176342	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.495	71.957	3	0.0023106	38062	160513_QHF_FH_JSI11Kac_5	52.887	36.202			0.37166	0.35433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37166	0.35433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2213100	1456500	756590	0	0	0	0	0	0	2213100	1456500	756590	0	0	0	30083	905	28468	186496	251983	251983	662		1	
LFEAEAQDLFR	0	Unmodified	1337.6616	0.66156582	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.887	72.612	2	0.006411	62686	160511_QHF_FH_JSI12i_2	62.005	34.122			1.4159	1.6262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4159	1.6262	NaN	1	1	Median	67036000	30127000	36908000	0	0	0	0	0	0	0	0	0	67036000	30127000	36908000	30084	4664	28469	186497	251984	251984			1	
LFEAEEQDLFK	1	Unmodified	1367.6609	0.66089712	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			68.81	68.002	2	0.024449	60364	160511_QHF_FH_JSI10i_2	48.561	28.799			0.61526	0.76044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61526	0.76044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47590000	24479000	23112000	0	0	0	47590000	24479000	23112000	0	0	0	0	0	0	30085	4727	28470	186498	251985	251985			1	
LFEAPNFFQK	1	Unmodified	1239.6288	0.62880913	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	1	3	3							1	1	3	2	77.48	76.824	2	8.1287E-07	66831	160511_QHF_FH_JSI12i_3	112.84	94.856			1.1321	1.0638	17.426	7	1	Median	1.3007	1.1224	NaN	1	0	Median	1.3515	1.5659	NaN	1	1	Median	1.0245	1.0462	5.4918	3	0	Median	1.1358	1.2003	18.759	2	0	Median	1070000000	439910000	630120000	183210000	74648000	108560000	42428000	15662000	26767000	406390000	163720000	242670000	438000000	185870000	252130000	30086	1724	28471	186499;186500;186501;186502;186503;186504;186505	251986;251987;251988;251989;251990	251989			5	
LFEAQGKPELK	2	Unmodified	1258.6921	0.69213767	5000	Q9NUG6	PDRG1	p53 and DNA damage-regulated protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	31.738	31.686	2;3	0.0071939	26616	160511_QHF_FH_JSI12i_3	49.081	34.401			1.3223	1.2608	59.012	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3223	1.2608	NaN	1	1	Median	1.1084	1.1166	82.864	2	2	Median	429260000	223230000	206030000	0	0	0	0	0	0	81992000	39190000	42802000	347270000	184040000	163230000	30087	5000	28472	186506;186507;186508;186509	251991;251992;251993;251994	251992			4	
LFEAVEEGR	0	Unmodified	1048.5189	0.51892433	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				33.405	32.363	2	0.016171	28251	160511_QHF_FH_JSI9i_2	53.775	30.251			1.2423	1.0501	NaN	1	1	Median	1.2423	1.0501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90410000	44382000	46028000	90410000	44382000	46028000	0	0	0	0	0	0	0	0	0	30088	327	28473	186510	251995	251995			1	
LFECDRDQMYYNLLK	1	Unmodified	2006.923	0.92301859	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.5	0.5		2	2								1	2	1	73.776	73.356	2;3	0.020109	65171	160511_QHF_FH_JSI10i_2	37.555	21.249			1.1409	1.1982	23.236	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0818	1.343	NaN	1	0	Median	0.98298	0.9451	22.302	2	1	Median	1.3164	1.2974	NaN	1	0	Median	473130000	212800000	260330000	0	0	0	110470000	47033000	63433000	143090000	73586000	69500000	219570000	92182000	127390000	30089	1544	28474	186511;186512;186513;186514	251996;251997	251997			2	
LFEDELTLDNLTRPQLVALCK	1	Unmodified	2487.3043	0.30431045	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	100.49	100.51	3	6.0152E-15	87131	160511_QHF_FH_JSI12i_3	132.14	103.64			1.063	1.0781	19.86	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87221	0.81994	NaN	1	0	Median	1.1167	1.1404	7.95	2	2	Median	186490000	92272000	94217000	0	0	0	0	0	0	59057000	30655000	28403000	127430000	61617000	65814000	30090	655	28475	186515;186516;186517	251998;251999;252000;252001	252001			4	
LFEDVANK	1	Unmodified	934.476	0.47599688	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	29.656	28.356	2	0.016966	23973	160511_QHF_FH_JSI12i_2	58.917	25.179			0.34311	0.36238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34311	0.36238	NaN	1	1	Median	16432000	10396000	6035600	0	0	0	0	0	0	0	0	0	16432000	10396000	6035600	30091	4152	28476	186518	252002	252002			1	
LFEELGK	1	Unmodified	834.44872	0.4487195	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	39.375	38.17	2	0.040857	33297	160511_QHF_FH_JSI9i_2	49.358	18.069			0.90687	0.87309	69.618	2	2	Median	0.64263	0.53366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2798	1.4284	NaN	1	1	Median	1608100000	612450000	995690000	691600000	342910000	348690000	0	0	0	0	0	0	916540000	269550000	647000000	30092	1417	28477	186519;186520	252003;252004	252004			2	
LFEEPEDPSNR	0	Unmodified	1331.5994	0.59935949	2052	P63151;Q9Y2T4	PPP2R2A;PPP2R2C	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.919	32.317	2	1.2671E-13	28857	160511_QHF_FH_JSI10i_1	153.24	141.88			1.0867	1.1718	9.9044	4	0	Linear	1.2586	1.0209	NaN	1	0	Median	0.96731	1.1305	NaN	1	0	Median	1.2209	1.1876	NaN	1	0	Median	0.89627	0.95334	NaN	1	0	Median	1224900000	616660000	608220000	269260000	118220000	151050000	347370000	186640000	160720000	356200000	190000000	166200000	252060000	121810000	130250000	30093	2052	28478	186521;186522;186523;186524	252005;252006;252007;252008;252009;252010;252011;252012	252010			8	
LFEEPEKPPPTGRPPAPPR	1	Unmodified	2111.1164	0.11637375	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	2	By matching	By MS/MS			3	0			2							1	1			40.782	39.262	4	0.008834	32840	160511_QHF_FH_JSI10i_3	38.417	28.459			1.1133	1.0608	4.7107	2	0	Median	1.3483	1.0968	NaN	1	0	Median	0.91928	1.0261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120020000	46837000	73182000	79999000	29485000	50514000	40020000	17351000	22668000	0	0	0	0	0	0	30094	280	28479	186525;186526	252013	252013			1	
LFEESDDKEDEDADGK	2	Unmodified	1840.7487	0.74866208	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS				1	0	2									2				22.71	21.504	2;3	0.0021828	18403	160511_QHF_FH_JSI9i_1	72.089	58.427			1.9099	1.5551	NaN	1	1	Median	1.9099	1.5551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48264000	15172000	33092000	48264000	15172000	33092000	0	0	0	0	0	0	0	0	0	30095	366	28480	186527;186528	252014;252015	252015			2	
LFEETGHEDPITK	1	Unmodified	1514.7253	0.72528829	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	36.057	35.158	2;3	0.00021474	29973	160511_QHF_FH_JSI11i_2	103.91	76.58			0.60266	0.61395	22.821	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60266	0.61395	13.104	2	1	Median	0.64	0.70213	34.793	2	2	Median	220810000	122470000	98339000	0	0	0	10108000	10108000	0	183340000	98309000	85032000	27365000	14058000	13307000	30096	2835	28481	186529;186530;186531;186532;186533;186534	252016;252017;252018;252019;252020;252021;252022;252023	252021			8	
LFEFAGYDVLR	0	Unmodified	1328.6765	0.6764876	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	1	2	2	3	89.337	87.716	2	1.7645E-09	79271	160511_QHF_FH_JSI10i_2	132.88	87.157			0.93452	1.0207	22.519	8	1	Median	1.2403	1.0518	NaN	1	0	Median	1.0497	1.235	23.8	2	1	Median	0.91054	0.90114	14.077	2	0	Median	0.89752	0.99825	26.6	3	0	Median	1091200000	553110000	538060000	139620000	65651000	73972000	205410000	115890000	89513000	345970000	153780000	192190000	400170000	217790000	182380000	30097	1818	28482	186535;186536;186537;186538;186539;186540;186541;186542	252024;252025;252026;252027;252028;252029;252030;252031;252032;252033;252034;252035;252036	252033			13	
LFEFFVLLK	1	Unmodified	1154.674	0.67396841	2843	Q4ZIN3	TMEM259	Membralin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				55.304	54.283	3	0.018778	47679	160511_QHF_FH_JSI9i_2	32.32	13.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30098	2843	28483	186543	252037	252037			1	
LFEGNALLR	0	Unmodified	1031.5764	0.57637963	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.54	3	4	3					1	4	3	4	4	4	57.001	53.351	2	8.6075E-06	44602	160511_QHF_FH_JSI10i_3	112.17	65.104			0.92632	1.0334	17.152	15	0	Median	1.442	1.1966	12.351	3	0	Median	0.83668	0.96404	9.0278	4	0	Median	0.98224	0.99152	13.436	4	0	Median	0.94373	0.97991	21.533	4	0	Median	14848000000	7170000000	7678100000	1572600000	715520000	857130000	2795000000	1554500000	1240500000	5860600000	2850300000	3010200000	4619800000	2049600000	2570200000	30099	1593	28484	186544;186545;186546;186547;186548;186549;186550;186551;186552;186553;186554;186555;186556;186557;186558	252038;252039;252040;252041;252042;252043;252044;252045;252046;252047;252048;252049	252041			12	
LFEHYYQELK	1	Unmodified	1368.6714	0.67140222	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.52		9	7						9	6	6	7	6	50.433	46.545	2;3	6.2473E-11	40271	160511_QHF_FH_JSI11i_2	145.72	125.2			0.97829	1.0015	49.031	24	14	Median	1.1078	0.95104	33.938	6	4	Median	0.81967	1.006	75.579	5	4	Median	0.95403	0.93903	51.229	7	3	Median	0.9112	1.0164	30.171	6	3	Median	4996200000	2172400000	2823800000	525510000	179520000	345980000	667780000	299250000	368530000	2641100000	1183200000	1457900000	1161800000	510430000	651400000	30100	2282	28485	186559;186560;186561;186562;186563;186564;186565;186566;186567;186568;186569;186570;186571;186572;186573;186574;186575;186576;186577;186578;186579;186580;186581;186582;186583	252050;252051;252052;252053;252054;252055;252056;252057;252058;252059;252060;252061;252062;252063;252064;252065;252066;252067;252068;252069;252070;252071;252072;252073;252074;252075;252076;252077;252078;252079;252080;252081;252082;252083;252084;252085	252067			35	
LFEILNDKK	2	Unmodified	1118.6336	0.63356015	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.36	45.239	3	0.0039115	38660	160511_QHF_FH_JSI12i_3	51.927	34.901			17.594	17.165	21.024	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16.058	14.794	NaN	1	1	Median	19.278	19.916	NaN	1	1	Median	45166000	2103900	43062000	0	0	0	0	0	0	21141000	703010	20438000	24025000	1400900	22624000	30101	2939	28486	186584;186585	252086;252087	252087			2	
LFEISDIVIK	1	Unmodified	1175.6802	0.680176	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	89.58	89.037	2	0.00013329	78321	160511_QHF_FH_JSI11i_2	83.948	47.553			0.85464	0.98575	12.206	5	0	Median	1.1508	0.98575	NaN	1	0	Median	0.85464	1.0406	NaN	1	0	Median	0.88959	0.87562	19.209	2	0	Median	0.85049	0.94818	NaN	1	0	Median	414010000	208060000	205950000	65825000	30829000	34995000	84551000	50586000	33965000	165890000	84002000	81890000	97745000	42645000	55100000	30102	4982	28487	186586;186587;186588;186589;186590	252088;252089;252090;252091;252092	252091			5	
LFEKYGK	2	Acetyl (K)	925.49092	0.49091866	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	42.143	32.149	2	0.048742	18263	160513_QHF_FH_JSI11Kac_5	60.648	17.602			0.54865	0.6248	69.738	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94858	1.1198	3.0157	2	0	Median	0.32162	0.3165	NaN	1	0	Median	0.32247	0.35612	NaN	1	0	Median	111460000	78099000	33357000	0	0	0	21308000	11013000	10296000	81334000	60226000	21109000	8813300	6860700	1952600	30103	2644	28488	186591;186592;186593;186594	252093	252093			1	
LFELEEQDLFR	0	Unmodified	1437.714	0.71399532	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.969	86.318	2	9.9467E-05	75875	160511_QHF_FH_JSI11i_2	87.298	67.536			0.75442	0.80232	10.146	4	0	Median	0.97383	0.86112	NaN	1	0	Median	0.61257	0.74754	NaN	1	0	Median	0.8936	0.88199	NaN	1	0	Median	0.63692	0.71917	NaN	1	0	Median	171950000	93439000	78515000	30760000	18026000	12734000	38016000	24346000	13670000	48206000	23490000	24716000	54972000	27577000	27395000	30104	5163	28489	186595;186596;186597;186598	252094;252095;252096;252097;252098;252099;252100;252101	252099			8	
LFEMAYK	1	Unmodified	900.44153	0.44152563	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	45.856	44.88	2	0.026496	37614	160511_QHF_FH_JSI10i_3	47.067	27.59			0.84734	0.92316	7.9661	4	0	Linear	1.2604	1.0724	NaN	1	0	Median	0.79219	0.98647	NaN	1	0	Median	0.86608	0.89759	NaN	1	0	Median	0.829	0.92093	NaN	1	0	Median	1398100000	814170000	583980000	197440000	104600000	92832000	379760000	227660000	152100000	411930000	224340000	187590000	409020000	257560000	151460000	30105	1480	28490	186599;186600;186601;186602;186603	252102;252103;252104;252105	252102			4	
LFEMAYKK	2	Unmodified	1028.5365	0.53648865	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	2	2	1	34.585	33.675	2;3	0.0059299	29191	160511_QHF_FH_JSI11i_3	51.346	30.646			1.2561	1.361	90.981	8	8	Median	0.73348	0.59654	120.67	3	3	Median	0.76806	0.88754	35.261	2	2	Median	3.3054	3.2174	80.054	2	2	Median	1.593	1.6265	NaN	1	1	Median	3605400000	1118900000	2486600000	711440000	220430000	491020000	517300000	222290000	295000000	1148400000	269280000	879120000	1228300000	406870000	821420000	30106	1480	28491	186604;186605;186606;186607;186608;186609;186610;186611	252106;252107;252108;252109;252110;252111;252112;252113	252107			8	
LFEMAYKK	2	Acetyl (K)	1070.5471	0.54705333	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		60.071	50.357	2	0.018308	27292	160513_QHF_FH_JSI11Kac_6	74.255	58.374			0.0549	0.053795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0549	0.053795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12491000	11665000	825720	0	0	0	0	0	0	12491000	11665000	825720	0	0	0	30107	1480	28491	186612	252114;252115	252115	1476		2	
LFEMLVSEAR	0	Unmodified	1193.6114	0.6114445	3551	Q8N612	FAM160A2	FTS and Hook-interacting protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				11.926	11.314	3	0.01436	9050	160511_QHF_FH_JSI9i_2	28.204	11.179			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30108	3551	28492	186613	252116	252116			1	
LFEMVLGPAAYNVPLPK	1	Unmodified	1858.0063	0.0062779369	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	101.35	101.22	3	2.671E-08	87063	160511_QHF_FH_JSI12i_2	131.96	110.12			1.1953	1.1802	32.681	2	1	Median	1.0671	0.93666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3389	1.487	NaN	1	0	Median	348910000	164610000	184300000	132330000	68310000	64019000	0	0	0	0	0	0	216580000	96295000	120280000	30109	2780	28493	186614;186615	252117;252118	252117			2	
LFENQLVGPESIAHIGDVMFTGTADGR	0	Unmodified	2873.4018	0.40179266	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	101.38	101.29	3	1.0737E-08	87084	160511_QHF_FH_JSI12i_2	77.984	71.214			1.2291	1.1453	22.555	4	0	Median	1.258	1.0851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2008	1.2088	NaN	1	0	Median	1.1181	1.1946	38.08	2	0	Median	704300000	282220000	422080000	107390000	35036000	72354000	0	0	0	234620000	83012000	151610000	362290000	164170000	198120000	30110	4877	28494	186616;186617;186618;186619	252119	252119			0	
LFEPLVIK	1	Unmodified	957.5899	0.58990443	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.64	2	7	3							3	4	3	2	77.708	76.971	2	0.017546	68905	160511_QHF_FH_JSI12i_2	48.504	43.649			0.91868	0.93081	31.895	12	1	Median	0.87977	0.76592	11.436	3	0	Median	0.78794	0.91714	20.656	4	0	Median	0.95932	0.96779	55.772	3	1	Median	1.0651	1.1131	16.231	2	0	Median	1217000000	636480000	580560000	204920000	103740000	101180000	362390000	203460000	158940000	417320000	210730000	206590000	232400000	118560000	113840000	30111	1549	28495	186620;186621;186622;186623;186624;186625;186626;186627;186628;186629;186630;186631	252120;252121;252122;252123;252124;252125;252126;252127;252128;252129;252130;252131	252120			12	
LFEPYVVHVLPHLLLCFGDGNQYVR	0	Unmodified	2984.5371	0.53710435	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			95.624	89.904	3;4	7.4896E-34	51890	160513_QHF_FH_JSI10Kac_6	147.91	140.79			0.90824	1.0878	28.821	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90824	1.0878	28.821	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	764760000	361560000	403200000	0	0	0	764760000	361560000	403200000	0	0	0	0	0	0	30112	3860	28496	186632;186633	252132;252133	252132			2	
LFEQILK	1	Unmodified	889.5273	0.52730417	3392	Q8IU85;Q14012	CAMK1D;CAMK1	Calcium/calmodulin-dependent protein kinase type 1D;Calcium/calmodulin-dependent protein kinase type 1	yes	no	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	55.483	54.553	2	0.056414	46691	160511_QHF_FH_JSI12i_2	41.652	4.5586			0.79864	0.83549	10.562	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.78984	0.98177	NaN	1	0	Median	0.79864	0.80339	NaN	1	0	Median	0.85062	0.94073	NaN	1	0	Median	291950000	157410000	134540000	0	0	0	68506000	37499000	31008000	122470000	59526000	62946000	100970000	60383000	40589000	30113	3392	28497	186634;186635;186636	252134	252134			1	
LFEQNVQR	0	Unmodified	1032.5352	0.53524309	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.82	2	4	2					3		1	4	3	3	22.597	19.63	2	8.0723E-05	16484	160511_QHF_FH_JSI11i_2	132.09	97.27			0.99424	1.0561	37.34	11	0	Median	1.4365	1.222	NaN	1	0	Median	0.89588	1.0512	22.711	4	0	Median	1.1216	1.145	9.0685	3	0	Plateau	0.86313	0.95788	70.552	3	0	Median	2772400000	1347000000	1425400000	446210000	198080000	248130000	713320000	353480000	359840000	896260000	433170000	463090000	716660000	362300000	354360000	30114	1935	28498	186637;186638;186639;186640;186641;186642;186643;186644;186645;186646;186647	252135;252136;252137;252138;252139;252140;252141;252142;252143;252144	252141			10	
LFESMLSECRDAIQVVR	0	Unmodified	2052.0132	0.013230583	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	101.13	100.92	3	0.051939	86815	160511_QHF_FH_JSI12i_2	21.233	10.859			0.30251	0.33663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30251	0.33663	NaN	1	1	Median	99228000	83547000	15682000	0	0	0	0	0	0	0	0	0	99228000	83547000	15682000	30115	5295	28499	186648	252145	252145			1	
LFETQESGDLNEELVK	1	Unmodified	1849.8945	0.89453846	3389	Q86YT6	MIB1	E3 ubiquitin-protein ligase MIB1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.48	62.835	2	0.0066229	57202	160511_QHF_FH_JSI12i_1	59.155	39.415			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14468000	14468000	0	0	0	0	0	0	0	0	0	0	14468000	14468000	0	30116	3389	28500	186649	252146	252146			1	
LFEVGGSPANTR	0	Unmodified	1246.6306	0.63060004	2264	Q08209;P16298	PPP3CA;PPP3CB	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.21	1	4	2					4		2	2	4	3	40.452	36.354	2	2.9038E-07	31280	160511_QHF_FH_JSI11i_2	128.91	106.76			0.79957	0.78068	18.538	11	5	Median	0.95544	0.78981	25.212	2	1	Median	0.70601	0.83172	19.329	2	1	Median	0.7742	0.77355	12.784	4	2	Median	0.91496	1.0286	22.654	3	1	Median	835220000	433050000	402170000	98859000	47531000	51328000	156940000	81740000	75204000	358560000	194360000	164190000	220860000	109420000	111450000	30117	2264	28501	186650;186651;186652;186653;186654;186655;186656;186657;186658;186659;186660	252147;252148;252149;252150;252151;252152;252153;252154;252155;252156;252157;252158;252159	252154			13	
LFFAGEHTIR	0	Unmodified	1189.6244	0.62439245	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	45.094	44.242	3	1.6557E-05	38569	160511_QHF_FH_JSI11i_3	89.171	62.385			0.85048	0.73888	29.111	4	1	Linear	1.8391	1.4939	NaN	1	1	Median	0.72236	0.84663	NaN	1	0	Median	0.84142	0.79368	NaN	1	0	Median	0.85963	0.88214	NaN	1	0	Median	864240000	397240000	467000000	185080000	70888000	114190000	260010000	133160000	126850000	276320000	119500000	156820000	142830000	73699000	69136000	30118	412	28502	186661;186662;186663;186664	252160;252161;252162;252163;252164;252165	252160			5	
LFFEFYHLLNYSRPK	1	Unmodified	1973.02	0.019954166	5231	Q9UBC3	DNMT3B	DNA (cytosine-5)-methyltransferase 3B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	86.264	77.933	4	4.7828E-05	44447	160513_QHF_FH_JSI10Kac_6	92.575	76.148			1.3621	1.1748	49.286	5	2	Median	0.86872	0.73669	62.844	2	2	Median	0.98615	1.1748	NaN	1	0	Median	1.5197	1.4417	NaN	1	0	Median	1.5857	1.6776	NaN	1	0	Median	849280000	409950000	439330000	311880000	139920000	171960000	324960000	178140000	146820000	131640000	58946000	72699000	80798000	32948000	47850000	30119	5231	28503	186665;186666;186667;186668;186669	252166;252167;252168;252169;252170	252170			5	
LFFHCSQYNGNLQDLK	1	Unmodified	1982.9309	0.93088116	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	3	5	3	2	65.164	61.025	2;3	5.7976E-53	54095	160511_QHF_FH_JSI11i_3	177.04	166.94			1.0473	1.0565	38.99	12	6	Median	1.2981	1.0437	31.419	3	2	Median	1.1949	1.3804	44.098	4	3	Median	0.74358	0.72068	58.466	3	1	Plateau	1.0473	1.0914	15.56	2	0	Median	1270900000	589370000	681520000	152620000	67121000	85498000	362030000	179600000	182440000	557500000	231290000	326210000	198740000	111370000	87375000	30120	543	28504	186670;186671;186672;186673;186674;186675;186676;186677;186678;186679;186680;186681;186682	252171;252172;252173;252174;252175;252176;252177;252178;252179;252180;252181;252182;252183;252184;252185;252186;252187;252188	252171			18	
LFFHYNPK	1	Unmodified	1064.5444	0.54435122	844	P06213	INSR	Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	46.349	41.806	3	0.00072772	34367	160511_QHF_FH_JSI9i_3	79.469	66.432			1.0014	1.0076	36.687	9	5	Median	0.9659	0.80683	31.653	2	1	Median	0.90783	1.03	45.449	2	2	Median	1.1791	1.146	18.207	2	0	Median	0.92602	0.96662	53.543	3	2	Median	309210000	151120000	158100000	74107000	38436000	35671000	53634000	30879000	22755000	49091000	20133000	28958000	132380000	61670000	70712000	30121	844	28505	186683;186684;186685;186686;186687;186688;186689;186690;186691	252189;252190;252191;252192;252193;252194;252195;252196;252197;252198;252199;252200;252201;252202	252195			14	
LFFILLTPVNHSTADK	1	Unmodified	1814.9931	0.99307071	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			6						9	5	4	4	2	91.419	86.571	2;3	3.7538E-85	44133	160513_QHF_FH_JSI11Kac_6	265.6	211.13			0.84226	0.82254	74.255	13	10	Median	0.72853	0.61731	114.84	4	4	Median	1.0074	1.2056	58.362	4	3	Median	0.74068	0.69935	65.788	4	3	Median	0.58454	0.61785	NaN	1	0	Median	2055600000	1202800000	852780000	436840000	273360000	163480000	735790000	373400000	362390000	609830000	381020000	228800000	273140000	175040000	98101000	30122	4219	28506	186692;186693;186694;186695;186696;186697;186698;186699;186700;186701;186702;186703;186704;186705;186706	252203;252204;252205;252206;252207;252208;252209;252210;252211;252212;252213;252214;252215;252216;252217;252218;252219;252220;252221;252222	252209			20	
LFFIQACGGEQK	1	Unmodified	1396.6809	0.68092105	1854	P55211	CASP9	Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	62.019	61.739	2	4.5556E-05	53280	160511_QHF_FH_JSI12i_3	100.48	78.391			1.1198	1.1312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1198	1.1312	NaN	1	0	Median	55597000	30094000	25504000	0	0	0	0	0	0	0	0	0	55597000	30094000	25504000	30123	1854	28507	186707;186708	252223;252224;252225	252225			3	
LFFKNVTGHYISPFHDIPLK	2	Acetyl (K)	2414.2787	0.27868805	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	86.394	77.011	4	4.8737E-08	41162	160513_QHF_FH_JSI12Kac_6	155.76	138.83			1.3549	1.3457	131.41	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56813	0.53136	NaN	1	0	Median	3.231	3.4079	NaN	1	1	Median	258960000	138850000	120100000	0	0	0	0	0	0	182400000	115920000	66477000	76554000	22928000	53626000	30124	4682	28508	186709;186710	252226;252227;252228	252228	3216		3	
LFFLQVK	1	Unmodified	893.53747	0.53747492	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.95	6.38		4	4				1	5	5	5	5	5	4	78.404	72.658	2	0.0035971	38556	160513_QHF_FH_JSI11Kac_6	106.29	86.004			0.94952	0.97916	17.472	19	0	Median	1.1931	0.97916	11.75	5	0	Median	0.85737	1.045	9.7386	5	0	Median	0.90422	0.86592	31.604	5	0	Median	0.93911	1.0011	12.679	4	0	Median	33191000000	14041000000	19150000000	8723100000	3212400000	5510700000	7613000000	4039400000	3573500000	7315100000	3307200000	4007900000	9540100000	3482300000	6057800000	30125	1073;1426;1270	28509	186711;186712;186713;186714;186715;186716;186717;186718;186719;186720;186721;186722;186723;186724;186725;186726;186727;186728;186729	252229;252230;252231;252232;252233;252234;252235;252236;252237;252238;252239;252240;252241;252242;252243;252244;252245;252246;252247;252248;252249;252250;252251;252252;252253;252254;252255;252256;252257;252258;252259;252260;252261;252262;252263;252264;252265;252266;252267;252268;252269;252270;252271;252272;252273;252274;252275	252245			47	
LFFPVIYDVK	1	Unmodified	1239.6903	0.69034675	5335	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				99.697	99.608	2	0.0026166	87516	160511_QHF_FH_JSI9i_2	61.679	49.831			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30126	5335	28510	186730	252276	252276			1	
LFFQPHQAGLSK	1	Unmodified	1371.7299	0.72992016	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	3	1	2	47.118	46.142	2;3	2.5456E-14	38806	160511_QHF_FH_JSI10i_3	135.55	106.08			1.2933	1.1971	25.93	7	6	Median	1.5318	1.259	15.19	2	2	Median	0.82414	0.97266	36.326	2	2	Median	1.2933	1.1971	NaN	1	1	Median	1.0559	1.062	41.502	2	1	Median	2565800000	1176400000	1389400000	784000000	308320000	475680000	680560000	367170000	313390000	86226000	40912000	45314000	1015100000	460040000	555020000	30127	4615	28511	186731;186732;186733;186734;186735;186736;186737;186738;186739	252277;252278;252279;252280;252281;252282;252283;252284;252285;252286;252287	252280			11	
LFFTTASAHLK	1	Unmodified	1234.671	0.67100829	5614	Q9Y485	DMXL1	DmX-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.194	51.959	3	0.022698	44500	160511_QHF_FH_JSI12i_3	20.857	17.634			2.3706	2.5109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3706	2.5109	NaN	1	0	Median	21193000	5113500	16079000	0	0	0	0	0	0	0	0	0	21193000	5113500	16079000	30128	5614	28512	186740	252288	252288			1	
LFFVGSR	0	Unmodified	824.45447	0.45447358	2172;3837	Q01650;Q9UM01;Q92536	SLC7A5;SLC7A7;SLC7A6	Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 1;Y+L amino acid transporter 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	5	4	4	55.658	49.883	2	0.0014665	25832	160513_QHF_FH_JSI12Kac_6	107.74	51.718			0.87991	0.93896	21.477	17	0	Median	1.3181	1.0781	14.674	4	0	Median	0.80969	0.94157	9.0303	5	0	Median	0.90328	0.8847	8.3172	4	0	Median	0.72514	0.76629	22.898	4	0	Median	7044700000	3516800000	3527900000	2102900000	811870000	1291000000	2527000000	1417200000	1109800000	1635600000	807060000	828540000	779210000	480710000	298510000	30129	2172;3837	28513	186741;186742;186743;186744;186745;186746;186747;186748;186749;186750;186751;186752;186753;186754;186755;186756;186757	252289;252290;252291;252292;252293;252294;252295;252296;252297;252298;252299;252300;252301;252302;252303;252304;252305;252306;252307;252308	252306			20	
LFFWMQEPK	1	Unmodified	1224.6002	0.60015154	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	86.469	85.773	2	0.0001215	74361	160511_QHF_FH_JSI12i_3	91.853	54.378			1.1016	1.0478	28.561	5	1	Median	1.4978	1.2069	NaN	1	0	Median	0.73285	0.82013	NaN	1	0	Median	1.1016	1.0478	NaN	1	1	Median	1.024	1.0597	49.734	2	0	Median	253920000	119030000	134880000	25040000	10205000	14835000	30875000	22863000	8012100	108280000	57880000	50404000	89718000	28085000	61632000	30130	2726	28514	186758;186759;186760;186761;186762	252309;252310;252311;252312;252313	252313			5	
LFFWMQEPK	1	Oxidation (M)	1240.5951	0.59506616	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	78.691	69.567	2	0.0077315	37547	160513_QHF_FH_JSI9Kac_6	58.433	24.181			1.0911	0.93012	35.532	3	1	Plateau	1.0911	0.93012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52977	0.51953	NaN	1	1	Median	0.906	0.98907	NaN	1	0	Median	49195000	26443000	22752000	21257000	10153000	11103000	0	0	0	15234000	10946000	4287600	12704000	5343100	7361200	30131	2726	28514	186763;186764;186765	252314;252315;252316	252315		2109	3	
LFFWNSK	1	Unmodified	940.48069	0.48068833	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	71.642	66.892	2	0.0055575	55529	160511_QHF_FH_JSI9i_3	94.407	45.904			0.91189	0.93684	10.671	8	0	Median	1.2408	1.0293	6.035	2	0	Median	0.81118	0.93684	1.8113	2	0	Median	0.90185	0.85733	7.1681	2	0	Median	0.96142	1.0201	16.354	2	0	Median	2479500000	1272300000	1207200000	495610000	207060000	288560000	667040000	373070000	293970000	672130000	356650000	315470000	644690000	335520000	309160000	30132	1194	28515	186766;186767;186768;186769;186770;186771;186772;186773	252317;252318;252319;252320;252321;252322;252323;252324;252325;252326;252327;252328;252329;252330;252331;252332;252333	252325			17	
LFFWWFTK	1	Unmodified	1173.6011	0.60113781	291	O15438	ABCC3	Canalicular multispecific organic anion transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.529	88.12	2	8.2489E-05	49782	160513_QHF_FH_JSI9Kac_6	126.67	91.86			0.86107	0.85858	38.317	4	0	Median	1.0644	0.89259	NaN	1	0	Median	0.69655	0.82586	NaN	1	0	Median	1.3174	1.2427	NaN	1	0	Median	0.458	0.49227	NaN	1	0	Median	629870000	321220000	308650000	174200000	83205000	90997000	205040000	105030000	100020000	159200000	62751000	96453000	91417000	70235000	21182000	30133	291	28516	186774;186775;186776;186777	252334;252335;252336;252337;252338;252339;252340;252341	252337			8	
LFGAGGGK	1	Unmodified	705.38097	0.38097428	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	13.542	13.288	2	0.01211	10228	160511_QHF_FH_JSI12i_3	53.554	27.445			0.71749	0.76627	26.356	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71749	0.83957	NaN	1	0	Median	0.54453	0.51164	NaN	1	1	Median	0.75988	0.76627	NaN	1	0	Median	2040900000	1218300000	822690000	0	0	0	279250000	137070000	142180000	979950000	667680000	312270000	781740000	413500000	368240000	30134	4708	28517	186778;186779;186780;186781	252342;252343;252344;252345;252346;252347	252346			6	
LFGALTPLEPR	0	Unmodified	1212.6867	0.68665836	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	72.464	71.73	2	1.7057E-05	62207	160511_QHF_FH_JSI12i_3	130.75	113.72			1.0749	1.1057	19.96	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4575	1.478	NaN	1	0	Median	0.97794	1.0559	6.5271	2	1	Median	428450000	210890000	217550000	0	0	0	0	0	0	98429000	44496000	53933000	330020000	166400000	163620000	30135	179	28518	186782;186783;186784	252348;252349;252350	252350			3	
LFGAPEPSTIAR	0	Unmodified	1257.6717	0.67173657	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	1	3	52.298	51.257	2	0.0009582	43891	160511_QHF_FH_JSI12i_2	68.846	32.451			1.079	1.1487	13.683	6	4	Median	1.1566	0.95101	NaN	1	0	Median	1.028	1.2269	5.3109	2	2	Median	1.3908	1.4096	NaN	1	1	Median	1.0277	1.0962	2.6053	2	1	Median	951550000	460940000	490620000	27649000	15413000	12236000	223420000	106170000	117260000	264430000	118430000	146000000	436050000	220930000	215120000	30136	3132	28519	186785;186786;186787;186788;186789;186790;186791	252351;252352;252353;252354;252355;252356;252357	252352			7	
LFGATNPK	1	Unmodified	846.45995	0.45995289	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	20.089	19.458	2	0.0055642	16278	160511_QHF_FH_JSI11i_3	65.252	40.254			1.1716	0.99772	25.249	7	0	Median	1.0983	0.90492	13.807	2	0	Median	0.67612	0.83352	NaN	1	0	Median	1.0503	1.0245	17.917	2	0	Median	1.3583	1.4707	8.2801	2	0	Median	1551900000	731280000	820580000	224050000	103580000	120470000	207520000	114960000	92561000	476830000	240560000	236280000	643460000	272190000	371270000	30137	4518	28520	186792;186793;186794;186795;186796;186797;186798	252358;252359;252360;252361;252362	252359			5	
LFGAVEHLQLANSYGLFR	0	Unmodified	2034.0687	0.068695273	4432	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	86.865	80.052	3	8.9992E-12	41923	160513_QHF_FH_JSI9Kac_6	122.44	111.33			0.71724	0.72484	42.516	5	2	Median	0.80502	0.69118	53.394	2	1	Median	0.60416	0.72484	NaN	1	0	Median	0.71724	0.68749	NaN	1	0	Median	1.3927	1.4616	NaN	1	1	Median	902010000	519570000	382440000	242780000	92585000	150200000	499710000	340580000	159120000	111770000	66398000	45370000	47752000	20007000	27745000	30138	4432	28521	186799;186800;186801;186802;186803	252363;252364;252365;252366;252367;252368;252369	252365			7	
LFGEAGPASGVGSSGGGGSGSGTGGGDAALDFK	1	Unmodified	2783.2634	0.26344451	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				68.446	67.452	3	0.00063874	59971	160511_QHF_FH_JSI9i_1	40.593	33.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30139	3434	28522	186804	252370	252370			1	
LFGEVTRPTNSK	1	Unmodified	1347.7147	0.71466402	5503	Q9Y291	MRPS33	28S ribosomal protein S33, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			26.181	24.857	3	0.000862	20113	160511_QHF_FH_JSI9i_3	58.04	45.245			0.8443	0.83304	0.45411	2	0	Median	1.0175	0.83037	NaN	1	0	Median	0.70058	0.83572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214160000	118990000	95168000	121780000	55511000	66270000	92377000	63479000	28898000	0	0	0	0	0	0	30140	5503	28523	186805;186806	252371;252372;252373	252373			3	
LFGFKEDPFVFIPEDDPLFPPIEK	2	Unmodified	2835.4411	0.44112151	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.41	102.37	3	2.3654E-09	89112	160511_QHF_FH_JSI12i_3	83.701	76.978			1.0618	1.0044	21.41	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2399	1.4461	NaN	1	0	Median	1.2141	1.1146	NaN	1	0	Median	0.92873	0.94583	NaN	1	0	Median	369400000	182530000	186870000	0	0	0	37723000	20268000	17455000	152920000	68387000	84537000	178750000	93873000	84881000	30141	2282	28524	186807;186808;186809	252374;252375;252376;252377;252378	252377			5	
LFGGLLR	0	Unmodified	774.47521	0.47520902	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.42		5	4					1	4	4	3	3	4	64.092	60.205	2	0.010434	53503	160511_QHF_FH_JSI11i_3	74.849	0			0.97554	0.99801	14.971	14	0	Median	1.2683	1.0743	10.447	4	0	Median	0.81666	0.92684	13.471	3	0	Median	0.97439	0.93867	14.038	3	0	Median	0.82686	0.91341	18.756	4	0	Median	5903200000	3010100000	2893100000	1086800000	457280000	629490000	1618800000	917460000	701380000	1449600000	734130000	715480000	1747900000	901210000	846720000	30142	561	28525	186810;186811;186812;186813;186814;186815;186816;186817;186818;186819;186820;186821;186822;186823	252379;252380;252381;252382;252383;252384;252385;252386;252387;252388;252389;252390;252391;252392;252393;252394;252395;252396;252397;252398;252399;252400;252401;252402;252403;252404;252405	252380			27	
LFGGNFAHQASVAR	0	Unmodified	1473.7477	0.74769548	202	O14773	TPP1	Tripeptidyl-peptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.25	5.63			3						1	2	2			41.433	39.902	3	0.0001895	33344	160511_QHF_FH_JSI10i_3	55.186	42.826			0.713	0.81999	39.059	3	1	Plateau	1.3326	1.0905	50.092	2	1	Median	0.713	0.81999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117720000	53574000	64148000	66721000	27090000	39631000	51001000	26484000	24517000	0	0	0	0	0	0	30143	202	28526	186824;186825;186826;186827	252406;252407;252408;252409;252410	252407			5	
LFGGQIVGQALVAAAK	1	Unmodified	1541.893	0.89296274	194	O14734	ACOT8	Acyl-coenzyme A thioesterase 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		89.18	88.605	2	5.7586E-05	79041	160511_QHF_FH_JSI11i_3	93.096	69.066			0.93512	0.83208	4.5339	2	0	Median	1.0148	0.85919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8617	0.80583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27990000	13757000	14233000	11323000	4992900	6330100	0	0	0	16667000	8764100	7902500	0	0	0	30144	194	28527	186828;186829	252411;252412;252413	252411			3	
LFGHSSTSALSAILR	0	Unmodified	1558.8467	0.84674083	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		74.758	65.797	3	1.3503E-24	35092	160513_QHF_FH_JSI9Kac_6	157.38	121.65			2.2738	2.0785	55.934	2	1	Median	1.6049	1.3995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.2216	3.0869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106100000	27372000	78724000	76288000	19941000	56347000	0	0	0	29809000	7431200	22377000	0	0	0	30145	3290	28528	186830;186831	252414;252415	252415			2	
LFGIESSSGTILWK	1	Unmodified	1536.8188	0.81879474	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	1	3		88.83	88.451	2	4.1839E-05	77760	160511_QHF_FH_JSI11i_2	141.95	114.63			1.133	1.13	10.413	4	4	Median	1.3595	1.1649	NaN	1	1	Median	1.0852	1.3415	NaN	1	1	Median	1.1205	1.0778	2.4031	2	2	Median	NaN	NaN	NaN	0	0	Median	115350000	55826000	59526000	20813000	11347000	9465800	19160000	8676500	10484000	75378000	35802000	39576000	0	0	0	30146	3562	28529	186832;186833;186834;186835;186836	252416;252417;252418;252419;252420	252419			5	
LFGLLVK	1	Unmodified	788.51601	0.5160112	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	68.944	67.908	2	0.0087469	57089	160511_QHF_FH_JSI10i_3	85.306	10.475			3.3157	3.2002	149.74	6	6	Median	0.87969	0.71306	198.48	2	2	Median	0.82164	0.93043	188.54	2	2	Median	5.2681	4.9838	NaN	1	1	Median	3.5679	3.5405	NaN	1	1	Median	851600000	398910000	452690000	273050000	148800000	124250000	248000000	139950000	108050000	106520000	25493000	81026000	224030000	84673000	139360000	30147	1586	28530	186837;186838;186839;186840;186841;186842	252421;252422;252423;252424;252425;252426	252423			6	
LFGLPNDS	0	Unmodified	861.42323	0.42323303	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	62.988	62.428	1;2	0.022973	56644	160511_QHF_FH_JSI12i_1	43.461	43.461			1.1538	1.0851	26.877	6	2	Median	1.3659	1.1365	NaN	1	0	Median	1.0719	1.2364	25.011	2	1	Median	1.4592	1.3784	42.681	2	1	Median	0.87993	0.91536	NaN	1	0	Median	210950000	96625000	114320000	22648000	9575200	13073000	78296000	37884000	40411000	86133000	35645000	50488000	23871000	13521000	10350000	30148	4132	28531	186843;186844;186845;186846;186847;186848	252427;252428;252429	252428			3	
LFGNILDK	1	Unmodified	918.51747	0.51746776	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		58.175	57.425	2	0.042114	50454	160511_QHF_FH_JSI9i_2	47.599	22.3			1.7174	1.5832	14.83	2	2	Median	2.0577	1.7583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4334	1.4256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189690000	100140000	89556000	87384000	45797000	41586000	0	0	0	102310000	54340000	47969000	0	0	0	30149	1273	28532	186849;186850	252430;252431	252430			2	
LFGNILDKHR	1	Acetyl (K)	1253.6881	0.68805534	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.875	55.209	3	0.004614	29923	160513_QHF_FH_JSI11Kac_6	56.087	38.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30150	1273	28533	186851	252432	252432	1180		1	
LFGNMEGDCPSDWK	1	Unmodified	1654.6756	0.67557768	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	60.712	60.014	2	1.1204E-29	52093	160511_QHF_FH_JSI11i_2	185.25	171.66			1.1477	1.2355	21.243	8	3	Median	1.3195	1.1646	NaN	1	0	Median	1.191	1.4232	11.628	2	0	Median	0.95489	0.96006	14.107	3	2	Median	1.2408	1.3286	1.1518	2	1	Median	427490000	192760000	234730000	27863000	10519000	17344000	82552000	42171000	40381000	218100000	108150000	109950000	98977000	31926000	67051000	30151	793	28534	186852;186853;186854;186855;186856;186857;186858;186859	252433;252434;252435;252436;252437;252438;252439;252440;252441;252442;252443;252444;252445;252446	252442			14	
LFGPYVWGR	0	Unmodified	1093.5709	0.57090032	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	1	3	2	2	72.578	69.403	2	0.00011617	37526	160513_QHF_FH_JSI10Kac_6	110.36	79.289			1.0083	0.98049	39.975	6	4	Median	1.1813	0.94963	NaN	1	1	Median	0.81208	0.94307	10.025	2	1	Median	2.2447	2.1441	NaN	1	1	Median	1.219	1.2569	52.653	2	1	Median	1749200000	812850000	936330000	145780000	55782000	89995000	1053800000	553940000	499870000	232140000	72746000	159400000	317450000	130380000	187060000	30152	4715	28535	186860;186861;186862;186863;186864;186865;186866;186867	252447;252448;252449;252450;252451;252452;252453;252454;252455;252456	252456			10	
LFGQESGPSAEK	1	Unmodified	1248.5986	0.59863121	4500	Q9BWH2	FUNDC2	FUN14 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	1	2	3	24.012	23.338	2	0.00024506	19408	160511_QHF_FH_JSI11i_2	77.662	61.46			1.0659	1.1048	31.209	8	1	Median	0.87998	0.72788	44.847	2	0	Median	1.0107	1.2212	NaN	1	0	Median	0.95511	0.95562	35.686	2	0	Median	1.039	1.1143	14.16	3	1	Plateau	671500000	337210000	334290000	136100000	63633000	72468000	53493000	26689000	26804000	263860000	138930000	124940000	218040000	107960000	110080000	30153	4500	28536	186868;186869;186870;186871;186872;186873;186874;186875	252457;252458;252459;252460;252461;252462;252463;252464;252465;252466;252467;252468	252466			12	
LFGQHLATEVIFK	1	Unmodified	1501.8293	0.82929985	186	O14657	TOR1B	Torsin-1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	72.686	72.539	3	2.8459E-05	62853	160511_QHF_FH_JSI12i_3	88.087	72.885			1.0622	1.0225	10.844	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0212	0.94707	NaN	1	0	Median	1.1048	1.104	NaN	1	0	Median	84942000	38262000	46680000	0	0	0	0	0	0	31575000	14555000	17020000	53366000	23707000	29660000	30154	186	28537	186876;186877;186878	252469;252470;252471	252471			3	
LFGSAANVVSAK	1	Unmodified	1162.6346	0.63462279	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	43.557	43.157	2	3.3201E-05	38029	160511_QHF_FH_JSI11i_3	105.83	79.726			1.0357	1.0099	49.12	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.33716	0.41258	NaN	1	1	Median	0.88302	0.83401	NaN	1	0	Median	1.0357	1.062	NaN	1	0	Median	683190000	382770000	300410000	0	0	0	31954000	23895000	8058600	260330000	148950000	111390000	390900000	209930000	180970000	30155	752	28538	186879;186880;186881	252472;252473;252474	252472			3	
LFGTFQQFGSSYDTHWITMWAEK	1	Unmodified	2779.2741	0.27407296	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	94.24	86.055	3	6.022E-38	48146	160513_QHF_FH_JSI11Kac_6	165.32	151.26			1.2668	1.0865	27.121	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4387	1.7269	NaN	1	1	Median	1.1154	1.073	NaN	1	0	Median	1.0171	1.0865	NaN	1	1	Median	278650000	89895000	188750000	0	0	0	153120000	42773000	110350000	83538000	29086000	54452000	41993000	18037000	23956000	30156	3198	28539	186882;186883;186884	252475;252476;252477;252478	252476			4	
LFGTPFYPLIGR	0	Unmodified	1379.7602	0.76015765	2963	Q5TAX3	ZCCHC11	Terminal uridylyltransferase 4	yes	yes	0	0	0	0		By matching		By MS/MS	3	0			2								1		1	98.288	98.167	2	0.055356	84790	160511_QHF_FH_JSI12i_3	35.224	24.394			0.89183	0.97478	10.573	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90046	1.0504	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88328	0.90456	NaN	1	0	Median	25676000	14165000	11512000	0	0	0	10043000	5183800	4859200	0	0	0	15633000	8980700	6652700	30157	2963	28540	186885;186886	252479	252479			1	
LFGTSGQK	1	Unmodified	836.43922	0.43921744	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	13.752	13.025	2	0.014498	10204	160511_QHF_FH_JSI12i_2	51.335	30.035			0.84362	0.81978	4.4311	2	0	Median	0.9097	0.79449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78235	0.84587	NaN	1	0	Median	97144000	55268000	41875000	57384000	30721000	26663000	0	0	0	0	0	0	39759000	24547000	15212000	30158	774	28541	186887;186888	252480;252481	252480			2	
LFGTTVTFK	1	Unmodified	1012.5593	0.55933258	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	2	3	3	3	59.149	55.979	2	0.0013128	47928	160511_QHF_FH_JSI12i_3	69.598	51.613			0.93611	0.98658	24.79	11	0	Median	1.0016	0.82387	9.0336	2	0	Median	0.91372	1.0697	40.072	3	0	Median	1.1533	1.1171	15.354	3	0	Median	0.93611	0.98658	13.879	3	0	Median	2212900000	1133200000	1079700000	272130000	141030000	131100000	439910000	238820000	201090000	729980000	352590000	377400000	770890000	400770000	370120000	30159	2721	28542	186889;186890;186891;186892;186893;186894;186895;186896;186897;186898;186899	252482;252483;252484;252485;252486;252487;252488;252489;252490;252491;252492;252493	252492			12	
LFGYEMAEFK	1	Unmodified	1233.574	0.57399637	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.124	71.243	2	1.0649E-06	62885	160511_QHF_FH_JSI9i_2	126.07	114.47			1.4017	1.4651	8.405	4	3	Median	1.6473	1.4257	NaN	1	1	Median	1.3297	1.6368	NaN	1	1	Median	1.4776	1.5056	NaN	1	1	Median	1.2096	1.343	NaN	1	0	Median	664340000	282270000	382070000	106660000	33873000	72782000	187800000	84399000	103400000	229780000	99188000	130590000	140110000	64809000	75296000	30160	5365	28543	186900;186901;186902;186903	252494;252495;252496;252497	252495			4	
LFGYEPTIYYPK	1	Unmodified	1489.7493	0.74931819	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.718	5	7	3							3	3	5	4	76.61	75.978	2;3	4.4853E-11	67761	160511_QHF_FH_JSI10i_2	150.81	134.67			0.92779	0.98773	16.62	15	4	Median	1.1488	0.98773	17.017	3	0	Median	0.8933	1.0776	21.726	3	1	Plateau	1.0104	1.0301	20.32	5	2	Median	0.87501	0.97319	13.312	4	1	Median	2926300000	1520400000	1405900000	564690000	233700000	330990000	621140000	318790000	302340000	1132700000	676920000	455830000	607750000	291030000	316720000	30161	3623	28544	186904;186905;186906;186907;186908;186909;186910;186911;186912;186913;186914;186915;186916;186917;186918	252498;252499;252500;252501;252502;252503;252504;252505;252506;252507;252508;252509;252510;252511;252512;252513;252514;252515;252516;252517;252518;252519;252520;252521;252522	252519			25	
LFGYEPTIYYPKRPNK	2	Acetyl (K)	2027.0516	0.051648225	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			74.442	67.932	3	0.0079408	36975	160513_QHF_FH_JSI10Kac_6	55.833	46.428			0.78398	0.94173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78398	0.94173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42268000	24160000	18108000	0	0	0	42268000	24160000	18108000	0	0	0	0	0	0	30162	3623	28545	186919	252523	252523	2895		1	
LFHAEQEK	1	Unmodified	1000.4978	0.49779495	2549;2547;2546	Q14571;Q14573;Q14643	ITPR2;ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	4	3	9.5088	9.2899	2;3	3.4073E-05	6969	160511_QHF_FH_JSI11i_3	125.31	125.31			0.89833	0.91152	43.021	10	5	Median	1.1033	0.95588	79.184	2	2	Median	0.93521	1.1604	NaN	1	0	Median	0.99127	0.96573	44.375	4	2	Median	0.54106	0.61392	26.797	3	1	Median	1712700000	981030000	731670000	110070000	58792000	51278000	177950000	101200000	76749000	605910000	351790000	254130000	818760000	469250000	349520000	30163	2546;2547;2549	28546	186920;186921;186922;186923;186924;186925;186926;186927;186928;186929	252524;252525;252526;252527;252528;252529;252530;252531;252532;252533;252534;252535	252525			10	
LFHALFFK	1	Unmodified	1021.5749	0.57492306	2843	Q4ZIN3	TMEM259	Membralin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	72.257	65.229	3	0.0006116	34612	160513_QHF_FH_JSI9Kac_6	77.674	68.811			1.0762	1.2434	46.042	5	1	Median	0.7745	0.67733	NaN	1	0	Median	1.0762	1.2434	NaN	1	0	Median	1.2724	1.2534	NaN	1	0	Median	0.7394	0.79611	72.527	2	1	Median	145770000	75099000	70674000	36096000	22184000	13911000	56750000	24750000	32001000	24397000	11267000	13130000	28530000	16898000	11632000	30164	2843	28547	186930;186931;186932;186933;186934	252536;252537;252538;252539;252540;252541;252542;252543;252544	252539			9	
LFHEVVQAFR	0	Unmodified	1244.6666	0.66659162	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							3	4	2		50.901	49.798	2;3	3.2501E-05	41559	160511_QHF_FH_JSI10i_3	80.231	68.068			0.60097	0.56698	101.65	8	4	Median	0.60097	0.49078	9.9858	2	0	Median	0.48311	0.55353	121.39	4	2	Median	2.5657	2.3994	50.814	2	2	Median	NaN	NaN	NaN	0	0	Median	760060000	370930000	389120000	174830000	110390000	64437000	232390000	115190000	117210000	352840000	145360000	207480000	0	0	0	30165	5603	28548	186935;186936;186937;186938;186939;186940;186941;186942;186943	252545;252546;252547;252548;252549;252550;252551;252552;252553;252554;252555;252556	252551			12	
LFHFLGIFLAK	1	Unmodified	1304.7645	0.76451475	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	4	2	3	90.481	82.475	2;3	1.7243E-20	45974	160513_QHF_FH_JSI11Kac_6	138.66	127.75			0.58152	0.49109	89.814	12	9	Median	0.68855	0.57697	105.49	3	2	Median	0.66371	0.79602	97.106	4	4	Median	0.63752	0.60525	52.349	2	0	Median	0.21643	0.22954	110.58	3	3	Median	4154700000	2435300000	1719300000	1139600000	538590000	600970000	1331800000	823030000	508780000	693310000	363890000	329420000	989990000	709830000	280160000	30166	5409	28549	186944;186945;186946;186947;186948;186949;186950;186951;186952;186953;186954;186955	252557;252558;252559;252560;252561;252562;252563;252564;252565;252566;252567;252568;252569;252570;252571	252558			15	
LFHIDFGYILGR	0	Unmodified	1449.7769	0.77687035	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	89.75	81.381	3	1.4553E-13	45111	160513_QHF_FH_JSI9Kac_6	131.37	87.377			0.76761	0.7779	41.959	5	1	Median	1.2897	1.1262	73.941	2	0	Median	0.64777	0.74135	NaN	1	0	Median	0.95399	0.95932	NaN	1	1	Median	0.73557	0.7779	NaN	1	0	Median	239160000	125870000	113290000	59314000	29013000	30301000	112110000	58233000	53873000	36263000	19298000	16965000	31475000	19324000	12151000	30167	3636	28550	186956;186957;186958;186959;186960	252572;252573;252574;252575;252576;252577	252574			6	
LFHPLEQSIWAVK	1	Unmodified	1566.8558	0.85584895	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0				By MS/MS	3	0			4										4	74.704	74.414	2;3	1.0117E-05	64676	160511_QHF_FH_JSI12i_3	136.7	123.53			0.89311	0.90622	30.023	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89311	0.90622	30.023	2	2	Median	130400000	76756000	53647000	0	0	0	0	0	0	0	0	0	130400000	76756000	53647000	30168	4560	28551	186961;186962;186963;186964	252578;252579;252580;252581;252582	252580			5	
LFHQAFISFR	0	Unmodified	1264.6717	0.671677	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	69.525	60.516	2;3	7.5788E-19	32067	160513_QHF_FH_JSI9Kac_6	158.79	138.76			0.91577	0.85887	39.96	9	3	Median	1.055	0.88651	18.206	2	0	Median	0.62439	0.73882	22.016	2	0	Median	0.71368	0.67689	33.673	2	1	Median	0.93415	1.0004	68.702	3	2	Median	1386100000	778580000	607490000	232430000	112660000	119780000	720420000	455120000	265310000	231750000	96919000	134830000	201460000	113880000	87582000	30169	3466	28552	186965;186966;186967;186968;186969;186970;186971;186972;186973	252583;252584;252585;252586;252587;252588;252589;252590;252591;252592;252593;252594	252587			12	
LFHSLMVLEK	1	Unmodified	1215.6686	0.66856545	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	63.787	60.491	3	0.00050407	49971	160511_QHF_FH_JSI9i_3	51.762	41.71			0.49622	0.50336	54.835	6	5	Median	1.1702	0.98432	9.3201	2	1	Median	0.29161	0.34184	57.662	2	2	Median	0.51152	0.47633	NaN	1	1	Median	0.48138	0.49302	NaN	1	1	Median	369740000	201400000	168340000	78221000	37037000	41185000	57223000	37108000	20115000	97180000	55692000	41488000	137120000	71565000	65553000	30170	2755	28553	186974;186975;186976;186977;186978;186979	252595;252596;252597;252598;252599;252600	252597			6	
LFHSTDTK	1	Unmodified	947.47125	0.47124585	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.6	5.2			4						1			2	3	8.5093	6.7783	2;3	0.011311	5698	160511_QHF_FH_JSI11i_3	33.378	15.992			0.58555	0.59758	36.082	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91088	0.8414	42.145	2	0	Median	0.49772	0.53541	9.2884	2	1	Median	874840000	494320000	380510000	0	0	0	0	0	0	504200000	305530000	198670000	370640000	188790000	181850000	30171	5644	28554	186980;186981;186982;186983;186984	252601;252602;252603;252604;252605	252602			5	
LFHTAPNVPHYAK	1	Unmodified	1493.7779	0.77793298	1799	P53582	METAP1	Methionine aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	32.727	32.097	3;4	1.7831E-07	26302	160511_QHF_FH_JSI9i_3	115.57	95.478			0.84257	0.8688	20.934	7	0	Median	0.94972	0.77321	16.485	2	0	Median	0.74847	0.87437	NaN	1	0	Median	1.0767	1.0034	4.471	2	0	Median	0.61855	0.62558	0.1182	2	0	Median	1871900000	862150000	1009800000	499120000	223470000	275650000	301560000	155150000	146410000	497390000	209230000	288160000	573840000	274300000	299540000	30172	1799	28555	186985;186986;186987;186988;186989;186990;186991	252606;252607;252608;252609;252610;252611;252612;252613;252614;252615;252616	252612			11	
LFHVSEDPSDLNEK	1	Unmodified	1628.7682	0.76821573	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	1	3	5	44.338	43.824	2;3	3.4593E-06	37293	160511_QHF_FH_JSI12i_3	129.89	113.22			0.75462	0.82664	27.519	8	6	Median	1.0728	0.90099	NaN	1	1	Median	0.68152	0.82861	NaN	1	1	Median	0.95056	0.88713	47.516	2	1	Median	0.73661	0.73777	29.137	4	3	Median	803320000	429870000	373450000	25094000	12441000	12653000	36562000	20930000	15632000	285690000	151240000	134450000	455980000	245260000	210720000	30173	1435	28556	186992;186993;186994;186995;186996;186997;186998;186999;187000;187001	252617;252618;252619;252620;252621;252622;252623;252624;252625;252626;252627;252628;252629	252627			13	
LFIFETFCR	0	Unmodified	1231.606	0.6059652	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	5.6	5.2			4						1	1	2	1	1	89.807	89.233	2	6.8665E-05	77598	160511_QHF_FH_JSI12i_3	96.492	57.344			1.0954	1.1203	20.622	4	0	Median	1.5998	1.3223	NaN	1	0	Median	0.81541	0.94915	NaN	1	0	Median	1.0191	0.93295	NaN	1	0	Median	1.1774	1.3656	NaN	1	0	Median	176700000	80473000	96228000	17463000	7412500	10051000	33061000	16281000	16780000	53199000	26569000	26629000	72978000	30210000	42768000	30174	1909	28557	187002;187003;187004;187005;187006	252630;252631;252632;252633;252634;252635	252634			6	
LFIFHSSLPTAEAPGK	1	Unmodified	1713.909	0.90900673	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	3	4	3	72.045	68.941	2;3	1.9125E-11	37183	160513_QHF_FH_JSI10Kac_6	126.16	113.78			0.95729	0.92819	18.108	13	3	Median	1.3738	1.1497	7.7821	3	0	Median	0.91518	1.0836	19.469	3	1	Plateau	0.99213	0.94975	22.792	4	2	Median	0.8122	0.83477	4.0734	3	0	Median	3086100000	1484800000	1601300000	706400000	285170000	421230000	708690000	361640000	347050000	950350000	430090000	520260000	720670000	407870000	312800000	30175	614	28558	187007;187008;187009;187010;187011;187012;187013;187014;187015;187016;187017;187018;187019	252636;252637;252638;252639;252640;252641;252642;252643;252644;252645;252646;252647;252648;252649;252650;252651;252652;252653;252654	252654			19	
LFIFLGK	1	Unmodified	836.51601	0.5160112	3524	Q8N3Y7	SDR16C5	Epidermal retinol dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	81.062	78.152	2	0.024744	41707	160513_QHF_FH_JSI10Kac_6	65.897	31.193			1.3731	1.5051	86.289	2	1	Median	NaN	NaN	NaN	0	0	Median	0.70372	0.81767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.6792	2.7705	NaN	1	1	Median	140530000	68247000	72283000	0	0	0	116440000	59102000	57336000	0	0	0	24092000	9144300	14947000	30176	3524	28559	187020;187021	252655;252656	252656			2	
LFIFQLIDGK	1	Unmodified	1192.6856	0.68559572	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				93.747	84.806	2	0.0056395	47867	160513_QHF_FH_JSI9Kac_6	73.196	48.205			1.7521	1.476	NaN	1	1	Median	1.7521	1.476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31788000	14650000	17138000	31788000	14650000	17138000	0	0	0	0	0	0	0	0	0	30177	4228	28560	187022;187023	252657;252658	252657			2	
LFIGGIPK	1	Unmodified	843.52182	0.52182486	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							2		1	1	59.038	57.949	2	0.030812	47689	160511_QHF_FH_JSI9i_3	41.502	7.7638			1.1738	1.0912	8.7628	4	0	Median	1.2595	1.0518	10.57	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2033	1.1923	NaN	1	0	Median	0.98052	1.0505	NaN	1	0	Median	98804000	43848000	54956000	44817000	19634000	25183000	0	0	0	29624000	12945000	16678000	24363000	11268000	13095000	30178	4	28561	187024;187025;187026;187027	252659;252660	252660			2	
LFIGGLNTETNEK	1	Unmodified	1434.7355	0.73545904	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.48	1	4	5				1	3	4	4	3	5	6	61.602	56.672	2	1.2436E-30	50268	160511_QHF_FH_JSI10i_2	188.99	161.24			0.93267	0.93567	20.997	15	2	Median	1.0346	0.87391	5.7098	3	0	Median	0.92521	1.1281	7.2864	3	0	Median	1.1217	1.0893	13.417	4	1	Median	0.74614	0.82917	26.027	5	1	Median	6767900000	3502000000	3265900000	611990000	273770000	338220000	778640000	394760000	383880000	2276800000	1120900000	1155900000	3100400000	1712600000	1387900000	30179	1474	28562	187028;187029;187030;187031;187032;187033;187034;187035;187036;187037;187038;187039;187040;187041;187042;187043;187044;187045	252661;252662;252663;252664;252665;252666;252667;252668;252669;252670;252671;252672;252673;252674;252675;252676;252677;252678;252679;252680;252681;252682;252683;252684;252685;252686;252687;252688;252689;252690;252691;252692;252693;252694;252695;252696;252697;252698;252699	252688			39	
LFIGGLNVQTSESGLR	0	Unmodified	1689.905	0.90498399	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.77	1	5	7						4	5	5	5	2	78.672	76.238	2;3	4.7818E-88	38567	160513_QHF_FH_JSI9Kac_6	232.42	179.63			0.89641	0.92619	33.149	17	5	Median	1.048	0.88064	56.96	5	3	Median	0.81801	0.95649	12.582	5	0	Median	0.98193	0.94519	6.4145	5	2	Median	0.72205	0.7299	0.51335	2	0	Median	3447600000	1843200000	1604300000	928390000	459230000	469160000	1062300000	564640000	497690000	694140000	342750000	351390000	762720000	476610000	286110000	30180	2361	28563	187046;187047;187048;187049;187050;187051;187052;187053;187054;187055;187056;187057;187058;187059;187060;187061;187062	252700;252701;252702;252703;252704;252705;252706;252707;252708;252709;252710;252711;252712;252713;252714;252715;252716;252717;252718;252719;252720;252721;252722;252723;252724;252725;252726	252721			27	
LFIGGLPNYLNDDQVK	1	Unmodified	1804.9359	0.93594977	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.78	5	7	6							3	4	6	5	91.021	90.602	2;3	7.6439E-30	80967	160511_QHF_FH_JSI11i_3	222.49	175.23			0.91001	0.97949	22.769	18	3	Median	1.0512	0.99383	9.0036	3	0	Plateau	0.75234	0.89184	23.026	4	1	Median	0.90184	0.90824	24.217	6	1	Median	0.87742	0.99746	31.191	5	1	Median	3265400000	1557100000	1708300000	313120000	151020000	162100000	392540000	210540000	181990000	1252600000	600710000	651850000	1307200000	594830000	712350000	30181	1274	28564	187063;187064;187065;187066;187067;187068;187069;187070;187071;187072;187073;187074;187075;187076;187077;187078;187079;187080	252727;252728;252729;252730;252731;252732;252733;252734;252735;252736;252737;252738;252739;252740;252741;252742;252743;252744;252745;252746;252747;252748;252749;252750;252751;252752;252753;252754;252755;252756;252757;252758;252759	252729			33	
LFIGGLSFETTDDSLR	0	Unmodified	1769.8836	0.88357984	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	93.901	93.899	2	1.9088E-10	81420	160511_QHF_FH_JSI12i_3	150.06	126.21			0.81067	0.78343	5.1881	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85	0.8127	NaN	1	0	Median	0.77316	0.75521	NaN	1	0	Median	75930000	40249000	35681000	0	0	0	0	0	0	30635000	15605000	15030000	45295000	24644000	20651000	30182	1763	28565	187081;187082	252760;252761;252762	252762			3	
LFIGGLSFETTDDSLREHFEK	1	Unmodified	2440.1911	0.19105483	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			18						4	7	9	4	2	90.538	88.278	3;4	1.3408E-19	79182	160511_QHF_FH_JSI11i_3	155.11	130.51			0.96513	1.0422	44.871	21	8	Median	1.2029	1.0167	75.1	7	4	Median	0.9114	1.0422	18.053	9	4	Median	1.1603	1.0701	25.517	3	0	Median	0.73592	0.77895	6.3801	2	0	Median	1493200000	758570000	734640000	577310000	282260000	295040000	524200000	285120000	239080000	318700000	152650000	166050000	73005000	38541000	34464000	30183	1763	28566	187083;187084;187085;187086;187087;187088;187089;187090;187091;187092;187093;187094;187095;187096;187097;187098;187099;187100;187101;187102;187103;187104	252763;252764;252765;252766;252767;252768;252769;252770;252771;252772;252773;252774;252775;252776;252777;252778;252779;252780;252781;252782;252783;252784;252785;252786;252787;252788;252789	252764			27	
LFIGGLSFETTDESLR	0	Unmodified	1783.8992	0.89922991	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.91	4	8	10						7	5	7	9	8	92.246	89.897	2;3	0	43468	160513_QHF_FH_JSI11Kac_6	407.37	336.02			1.0095	0.95358	34.364	26	5	Median	1.127	0.93692	9.3491	5	0	Median	0.75818	0.90445	37.949	6	1	Median	1.1823	1.0988	46.252	8	2	Median	0.90599	0.9098	21.729	7	2	Median	15457000000	7598800000	7857800000	2983000000	1348100000	1634900000	1261500000	722250000	539240000	5337200000	2486700000	2850500000	5875000000	3041800000	2833200000	30184	936	28567	187105;187106;187107;187108;187109;187110;187111;187112;187113;187114;187115;187116;187117;187118;187119;187120;187121;187122;187123;187124;187125;187126;187127;187128;187129;187130;187131;187132;187133	252790;252791;252792;252793;252794;252795;252796;252797;252798;252799;252800;252801;252802;252803;252804;252805;252806;252807;252808;252809;252810;252811;252812;252813;252814;252815;252816;252817;252818;252819;252820;252821;252822;252823;252824;252825;252826;252827;252828;252829;252830;252831;252832;252833;252834;252835;252836;252837;252838;252839;252840;252841;252842;252843;252844;252845;252846;252847;252848;252849;252850;252851;252852;252853	252812			62	
LFIGGLSFETTEESLR	0	Unmodified	1797.9149	0.91487997	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.2	3	7	14						10	5	7	9	13	93.199	90.799	2;3	8.4598E-121	43670	160513_QHF_FH_JSI11Kac_6	269.04	227.92			0.80293	0.87869	27.72	30	5	Median	1.1407	0.9719	25.301	5	0	Median	0.75474	0.9099	23.132	6	0	Median	1.0289	1.0214	39.616	8	2	Median	0.74273	0.77206	18.323	11	3	Median	13464000000	6695000000	6769100000	2433000000	1139800000	1293200000	1819500000	1013000000	806580000	3831500000	1628800000	2202700000	5380100000	2913400000	2466700000	30185	1212	28568	187134;187135;187136;187137;187138;187139;187140;187141;187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157;187158;187159;187160;187161;187162;187163;187164;187165;187166;187167	252854;252855;252856;252857;252858;252859;252860;252861;252862;252863;252864;252865;252866;252867;252868;252869;252870;252871;252872;252873;252874;252875;252876;252877;252878;252879;252880;252881;252882;252883;252884;252885;252886;252887;252888;252889;252890;252891;252892;252893;252894;252895;252896;252897;252898;252899;252900;252901;252902;252903;252904	252871			51	
LFIGGLSFETTEESLRNYYEQWGK	1	Unmodified	2866.3814	0.3813748	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.19	86.797	3;4	7.8464E-53	51119	160513_QHF_FH_JSI10Kac_6	187.06	176.76			1.1428	1.1346	28.565	8	0	Median	1.3276	1.1346	0.86151	2	0	Median	0.96261	1.1424	4.9727	2	0	Median	1.5696	1.4927	12.279	2	0	Median	0.69097	0.72689	14.11	2	0	Median	6535900000	3234500000	3301400000	1730700000	811150000	919530000	3060000000	1587600000	1472400000	1202900000	484890000	718000000	542320000	350920000	191400000	30186	1212	28569	187168;187169;187170;187171;187172;187173;187174;187175	252905;252906;252907;252908;252909;252910;252911;252912;252913;252914;252915;252916;252917	252916			12	
LFIGMISK	1	Unmodified	907.52011	0.5201103	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	68.612	63.82	2	0.0017787	55465	160511_QHF_FH_JSI12i_3	85.064	31.598			0.94331	0.98929	8.6286	8	0	Median	1.1935	1.0016	4.5548	2	0	Median	0.89712	1.0459	5.0562	2	0	Median	1.03	0.98969	9.1982	2	0	Median	0.84597	0.86753	0.39651	2	0	Median	4294400000	2159600000	2134800000	981220000	433880000	547340000	908860000	478430000	430430000	1272000000	655390000	616590000	1132300000	591900000	540440000	30187	3897	28570	187176;187177;187178;187179;187180;187181;187182;187183	252918;252919;252920;252921;252922;252923;252924;252925;252926;252927;252928;252929;252930;252931;252932;252933;252934;252935;252936;252937	252933			20	
LFIGMISK	1	Oxidation (M)	923.51502	0.51502492	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	12.3	5.87			2						5	3	2	1	1	57.509	50.443	2	0.024718	26948	160513_QHF_FH_JSI9Kac_6	48.787	30.005			0.94962	1.1073	30.632	7	1	Median	0.97291	0.82847	43.63	3	1	Plateau	0.83372	0.97676	17.739	2	0	Median	1.308	1.2445	NaN	1	0	Median	0.86807	0.91145	NaN	1	0	Median	334830000	145280000	189560000	167200000	67462000	99741000	86050000	42746000	43303000	49427000	21074000	28352000	32155000	13993000	18162000	30188	3897	28570	187184;187185;187186;187187;187188;187189;187190	252938;252939;252940;252941;252942	252940			5	
LFIGMISKK	2	Unmodified	1035.6151	0.61507332	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				59.427	50.304	3	0.043316	26773	160513_QHF_FH_JSI9Kac_6	28.577	16.363			0.18632	0.15998	NaN	1	1	Median	0.18632	0.15998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20397000	17022000	3374600	20397000	17022000	3374600	0	0	0	0	0	0	0	0	0	30189	3897	28571	187191	252943	252943			1	
LFIGNLPR	0	Unmodified	928.54944	0.54943659	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	59.271	58.441	2	0.0027983	48093	160511_QHF_FH_JSI9i_3	77.374	8.9757			0.82355	0.82604	2.9402	4	0	Median	1.0024	0.82947	NaN	1	0	Median	0.73989	0.86511	NaN	1	0	Median	0.86432	0.82262	NaN	1	0	Median	0.7847	0.80685	NaN	1	0	Median	1154600000	584610000	570040000	313370000	146560000	166810000	248060000	122300000	125770000	320660000	151550000	169110000	272540000	164190000	108350000	30190	4498;4343	28572	187192;187193;187194;187195	252944;252945;252946;252947;252948;252949	252947			6	
LFIHEYISGYYR	0	Unmodified	1559.7773	0.77726428	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	3	3	1	71.383	62.82	2;3	2.0703E-12	32856	160513_QHF_FH_JSI12Kac_6	147.12	113.23			1.398	1.2802	28.943	8	2	Median	1.5678	1.3517	5.1884	2	0	Median	1.027	1.2084	34.958	3	2	Median	1.444	1.3947	14.618	2	0	Median	0.70447	0.75192	NaN	1	0	Median	505990000	239540000	266440000	93855000	32113000	61742000	280050000	151550000	128490000	103900000	44117000	59779000	28188000	11755000	16434000	30191	5445	28573	187196;187197;187198;187199;187200;187201;187202;187203;187204	252950;252951;252952;252953;252954;252955;252956;252957;252958	252955			9	
LFIHGGLAGDR	0	Unmodified	1154.6196	0.61964142	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0	By MS/MS		By matching		3	0			2							1		1		38.447	37.702	3	0.042236	30924	160511_QHF_FH_JSI9i_3	29.39	26.127			1.147	0.97991	45.449	2	0	Median	0.87758	0.71059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4991	1.3513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83698000	38095000	45603000	43557000	21887000	21670000	0	0	0	40141000	16208000	23933000	0	0	0	30192	3289	28574	187205;187206	252959	252959			0	
LFIILCR	0	Unmodified	933.54699	0.54699375	3181	Q6ZNJ1	NBEAL2	Neurobeachin-like protein 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		84.898	75.581	2	0.038279	41868	160513_QHF_FH_JSI11Kac_6	53.522	6.8581			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30193	3181	28575	187207	252960	252960			1	
LFIIQACR	0	Unmodified	1019.5586	0.55862107	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		63.081	54.056	2	0.0082477	29352	160513_QHF_FH_JSI11Kac_6	71.378	0			1.0699	1.1272	13.826	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89374	1.0222	NaN	1	1	Median	1.2808	1.2429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85992000	46237000	39754000	0	0	0	59238000	33501000	25737000	26753000	12736000	14017000	0	0	0	30194	1539	28576	187208;187209	252961;252962	252961			2	
LFILDEADK	1	Unmodified	1062.5597	0.55972651	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.052	63.512	2	0.01177	57541	160511_QHF_FH_JSI11i_1	48.423	30.099			0.65335	0.64253	34.681	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5276	0.5028	NaN	1	0	Median	0.80907	0.8211	NaN	1	0	Median	55684000	29160000	26524000	0	0	0	0	0	0	30152000	15271000	14881000	25532000	13889000	11643000	30195	5301	28577	187210;187211	252963	252963			1	
LFILQGPEEDREAESELTVTQLK	1	Unmodified	2644.3596	0.35957672	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	87.051	86.844	3	4.0622E-24	77515	160511_QHF_FH_JSI11i_3	163.42	146.05			0.85773	0.83569	20.838	3	2	Median	0.73641	0.62269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85773	0.83569	NaN	1	0	Median	0.91973	0.93149	NaN	1	1	Median	118330000	51233000	67100000	29372000	17730000	11642000	0	0	0	62793000	21049000	41744000	26168000	12454000	13714000	30196	4505	28578	187212;187213;187214	252964;252965;252966;252967	252965			4	
LFIMVMHIR	0	Oxidation (M)	1174.6355	0.63549118	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									7	3	2		2	68.667	59.875	3	0.00039955	31178	160513_QHF_FH_JSI10Kac_6	80.438	61.195			0.85765	0.83982	9.8892	4	0	Median	0.97669	0.83955	9.4661	2	0	Median	0.80564	0.95651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74777	0.78569	NaN	1	0	Median	101710000	55178000	46528000	46468000	21774000	24695000	17139000	11903000	5235200	0	0	0	38099000	21501000	16598000	30197	162	28579	187215;187216;187217;187218;187219;187220;187221	252968;252969;252970;252971;252972;252973;252974;252975;252976	252975		70;71	9	
LFIMVMHIR	0	2 Oxidation (M)	1190.6304	0.63040581	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	57.582	48.402	3	0.012926	25371	160513_QHF_FH_JSI12Kac_6	43.734	33.503			0.74605	0.73677	22.493	3	3	Plateau	0.74605	0.63606	NaN	1	1	Median	0.72297	0.85343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89572	0.98949	NaN	1	1	Median	52690000	32367000	20324000	21296000	14044000	7251500	23406000	13707000	9699200	0	0	0	7988600	4615600	3373000	30198	162	28579	187222;187223;187224	252977;252978;252979	252978		70;71	3	
LFIMVMHIR	0	Unmodified	1158.6406	0.64057656	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.994	70.744	3	9.5106E-05	38707	160513_QHF_FH_JSI10Kac_6	93.429	71.683			0.96193	1.1508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96193	1.1508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91421000	45100000	46320000	0	0	0	91421000	45100000	46320000	0	0	0	0	0	0	30199	162	28579	187225	252980;252981	252980			2	
LFIPWTNQK	1	Unmodified	1145.6233	0.62332982	2959	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	71.884	71.011	2	0.0045667	59498	160511_QHF_FH_JSI10i_3	66.692	23.665			0.75159	0.8093	47.913	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98752	1.1357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57202	0.57673	NaN	1	0	Median	116300000	78544000	37761000	0	0	0	36800000	21661000	15138000	0	0	0	79505000	56882000	22623000	30200	2959	28580	187226;187227	252982;252983	252982			1	
LFISGLPFSCTK	1	Unmodified	1368.7112	0.71115855	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	87.111	86.282	2	0.00015561	72105	160511_QHF_FH_JSI10i_3	99.653	88.502			0.92039	0.89599	11.227	3	2	Plateau	1.2724	1.0431	NaN	1	0	Median	0.92039	1.0671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85606	0.86944	NaN	1	1	Median	140790000	81911000	58878000	19942000	9657400	10284000	24450000	15099000	9350600	0	0	0	96398000	57155000	39243000	30201	2604	28581	187228;187229;187230	252984;252985;252986	252984			3	
LFISHFLLK	1	Unmodified	1116.6696	0.66955173	2881	Q5C9Z4	NOM1	Nucleolar MIF4G domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	1	2	77.557	72.181	2;3	9.5428E-05	38708	160513_QHF_FH_JSI10Kac_6	82.287	71.529			0.93307	1.4271	22.592	8	1	Linear	1.0144	0.85751	2.5514	2	1	Median	0.92102	1.0896	16.927	3	0	Plateau	1.6552	1.6147	NaN	1	0	Median	0.86853	0.90626	1.5823	2	0	Median	525520000	274800000	250720000	67859000	27375000	40483000	298230000	180320000	117910000	94122000	32636000	61486000	65312000	34471000	30841000	30202	2881	28582	187231;187232;187233;187234;187235;187236;187237;187238	252987;252988;252989;252990;252991;252992;252993;252994;252995;252996;252997;252998;252999;253000	252997			14	
LFITEFPKPEFMSK	2	Unmodified	1712.8848	0.88476582	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	88.739	88.154	3	0.00045197	76368	160511_QHF_FH_JSI12i_3	66.246	54.269			0.71078	0.66121	22.01	4	2	Median	0.85921	0.68456	NaN	1	1	Median	0.78882	0.9571	NaN	1	1	Median	0.62491	0.57518	NaN	1	0	Median	0.64046	0.63867	NaN	1	0	Median	504330000	250680000	253650000	53018000	25785000	27233000	87852000	51393000	36459000	137520000	66964000	70557000	225940000	106540000	119400000	30203	1825	28583	187239;187240;187241;187242	253001;253002;253003;253004;253005	253005			5	
LFIVDARPAMAATSFILMTTFPNK	1	Unmodified	2654.3964	0.3964367	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									8	3		2	3	98.126	88.818	3;4	1.0645E-37	51006	160513_QHF_FH_JSI9Kac_6	214.31	185.81			1.049	0.91227	42.706	8	5	Median	1.135	0.98681	41.293	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0223	0.96298	32.404	2	1	Median	0.7235	0.77838	53.007	3	1	Median	1588900000	825020000	763920000	615480000	265940000	349540000	0	0	0	549670000	307580000	242090000	423800000	251500000	172300000	30204	5453	28584	187243;187244;187245;187246;187247;187248;187249;187250	253006;253007;253008;253009;253010;253011;253012;253013	253010			8	
LFIVDARPAMAATSFILMTTFPNK	1	Oxidation (M)	2670.3914	0.39135132	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	1	1			By MS/MS		16	0									1			1		96.473	87.073	3	3.8738E-13	49476	160513_QHF_FH_JSI11Kac_6	154.71	135.61			1.3797	1.3243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3797	1.3243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108740000	39648000	69092000	0	0	0	0	0	0	108740000	39648000	69092000	0	0	0	30205	5453	28584	187251	253014	253014		2664	1	
LFIVESNSSSSTR	0	Unmodified	1425.71	0.70997257	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.24	6.49		5	3				1	4	4	3	6	4	4	46.064	40.452	2	2.8088E-22	35789	160511_QHF_FH_JSI11i_3	177.57	137.57			0.95474	1.0299	20.804	15	4	Median	1.3903	1.4051	9.6157	3	0	Plateau	0.98387	1.1842	27.82	4	2	Median	0.88729	0.83354	3.9594	4	1	Linear	0.89324	0.95521	15.436	4	1	Median	1617800000	761490000	856350000	220290000	83941000	136340000	453250000	222590000	230660000	471380000	223890000	247490000	472920000	231070000	241850000	30206	1623	28585	187252;187253;187254;187255;187256;187257;187258;187259;187260;187261;187262;187263;187264;187265;187266;187267;187268	253015;253016;253017;253018;253019;253020;253021;253022;253023;253024;253025;253026;253027;253028;253029;253030;253031;253032;253033;253034;253035;253036;253037;253038;253039;253040;253041	253016			27	
LFIYNPTTGEFLGR	0	Unmodified	1626.8406	0.84059282	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.81		3	1						3	1	1	2	3	87.646	83.884	2	1.4168E-16	42254	160513_QHF_FH_JSI11Kac_6	140.3	104.36			0.98533	1.0505	71.597	7	3	Median	1.2418	1.0505	NaN	1	0	Median	0.98427	1.1574	NaN	1	1	Median	0.41362	0.41036	132.86	2	1	Median	0.98533	1.0864	9.2521	3	1	Median	993590000	560420000	433170000	90932000	46190000	44742000	230960000	144240000	86724000	234540000	152550000	81991000	437150000	217440000	219710000	30207	1829	28586	187269;187270;187271;187272;187273;187274;187275	253042;253043;253044;253045;253046;253047;253048;253049;253050	253043			8	
LFKMHSPQTSAMLFTVDNEAGK	2	Acetyl (K)	2493.2032	0.2032162	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.771	71.457	3	9.3166E-09	39245	160513_QHF_FH_JSI11Kac_6	144.08	131.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30865000	30865000	0	0	0	0	0	0	0	30865000	30865000	0	0	0	0	30208	1664	28587	187276	253051	253051	1688		1	
LFKPGQEAVK	2	Unmodified	1115.6339	0.63389451	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.276		1	11							5	2	2	3	20.644	19.957	2;3	6.2497E-05	16145	160511_QHF_FH_JSI12i_3	118.71	75.465			1.1301	1.0868	118.94	12	12	Median	0.55656	0.46889	133.89	5	5	Median	0.76577	0.88475	186.26	2	2	Median	1.1941	1.1338	162.98	2	2	Median	2.2947	2.3203	90.795	3	3	Median	12999000000	6057600000	6941800000	3290600000	1434900000	1855700000	3142300000	1758400000	1384000000	2833600000	1247100000	1586500000	3732900000	1617200000	2115700000	30209	3603	28588	187277;187278;187279;187280;187281;187282;187283;187284;187285;187286;187287;187288	253052;253053;253054;253055;253056;253057;253058;253059;253060;253061;253062;253063;253064	253064			13	
LFKPSFDVK	2	Acetyl (K)	1121.6121	0.61209643	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	74.811	64.191	2	0.011561	34238	160513_QHF_FH_JSI11Kac_5	60.91	12.349			1.2509	1.2941	30.879	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0612	1.0402	NaN	1	0	Median	1.4744	1.6098	NaN	1	0	Median	5754600	2900600	2854000	0	0	0	0	0	0	3249700	1721000	1528700	2505000	1179600	1325400	30210	3843	28589	187289;187290	253065	253065	2956		1	
LFLAGYDPTPTMR	0	Unmodified	1480.7384	0.73843593	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.5	5.5			1					1	2	2	1	1		75.184	70.233	2	6.2557E-12	36824	160513_QHF_FH_JSI9Kac_6	119.16	102.21			1.3641	1.307	31.523	3	2	Plateau	1.3576	1.1524	NaN	1	0	Median	0.6134	0.71878	NaN	1	1	Median	1.3641	1.307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	391160000	188650000	202510000	42154000	20454000	21699000	49670000	30969000	18701000	299330000	137230000	162110000	0	0	0	30211	525	28590	187291;187292;187293;187294	253066;253067;253068;253069;253070	253068			5	
LFLAGYDPTPTMR	0	Oxidation (M)	1496.7334	0.73335055	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.36			2					4	2	3	1	3	1	70.956	62.376	2	4.7036E-05	33182	160513_QHF_FH_JSI9Kac_6	105.86	79.925			1.2047	1.0769	22.31	6	3	Median	1.0795	0.87155	31.646	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.2389	1.2011	6.511	2	1	Median	0.87054	0.92919	NaN	1	0	Median	47915000	18102000	29813000	30791000	11105000	19686000	0	0	0	13437000	5330600	8106200	3686900	1665500	2021400	30212	525	28590	187295;187296;187297;187298;187299;187300;187301;187302	253071;253072;253073;253074;253075;253076;253077;253078;253079;253080	253080		196	10	
LFLAGYELTPTMR	0	Unmodified	1510.7854	0.78538612	2829	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	1	4	3	87.216	85.602	2	2.1322E-06	75856	160511_QHF_FH_JSI12i_3	120.68	83.207			1.0125	1.0378	158.17	7	4	Median	0.16664	0.14143	307.3	2	1	Median	1.0125	1.2321	NaN	1	0	Median	0.99399	0.9387	14.198	2	2	Median	0.95904	0.96393	13.633	2	1	Median	419000000	310870000	108130000	245560000	227040000	18521000	36057000	17428000	18630000	80711000	41722000	38989000	56667000	24676000	31991000	30213	2829	28591	187303;187304;187305;187306;187307;187308;187309;187310;187311;187312	253081;253082;253083;253084;253085;253086;253087;253088;253089;253090;253091;253092	253091			12	
LFLASLAAAGSGTDAQVALVNEVK	1	Unmodified	2344.2638	0.26382585	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	100.97	100.98	3	1.1315E-28	87577	160511_QHF_FH_JSI12i_3	154.65	142.16			1.1075	1.1169	11.856	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3046	1.2097	NaN	1	1	Median	1.0248	1.0344	10.85	2	2	Median	424770000	205420000	219350000	0	0	0	0	0	0	78095000	35802000	42293000	346670000	169620000	177050000	30214	3290	28592	187313;187314;187315	253093;253094;253095	253095			3	
LFLDFLEEFQSSDGEIK	1	Unmodified	2015.9728	0.97278878	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	97.011	87.569	2	6.0495E-85	47858	160513_QHF_FH_JSI12Kac_6	218.85	185.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30215	2545	28593	187316	253096	253096			1	
LFLDGEEEK	1	Unmodified	1078.5183	0.51825563	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			19.443	18.315	3	0.057368	15060	160511_QHF_FH_JSI10i_3	15.151	5.563			1.4144	1.6297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4144	1.6297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52577000	27550000	25026000	0	0	0	52577000	27550000	25026000	0	0	0	0	0	0	30216	4959	28594	187317	253097	253097			1	
LFLDHKTLYYDVEPFLFYVMTEADNTGCHLIGYFSK	2	Acetyl (K)	4388.085	0.085005128	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			101.69	95.972	4	2.6054E-66	56707	160513_QHF_FH_JSI10Kac_6	172.4	164.9			1.1328	1.3521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1328	1.3521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122240000	64112000	58132000	0	0	0	122240000	64112000	58132000	0	0	0	0	0	0	30217	666	28595	187318	253098;253099	253099	330		2	
LFLDHPHR	0	Unmodified	1033.5457	0.5457482	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By matching		3	0			2							1		1		20.981	20.346	3	0.0019366	16536	160511_QHF_FH_JSI9i_3	51.066	35.627			1.4425	1.2672	3.9042	2	0	Median	1.511	1.2327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.377	1.3027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113760000	45721000	68040000	90102000	36333000	53770000	0	0	0	23659000	9388400	14271000	0	0	0	30218	3860	28596	187319;187320	253100	253100			1	
LFLDRDLMTLPIQNK	1	Unmodified	1815.9917	0.99169051	1217	P22830	FECH	Ferrochelatase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		90.047	89.32	3	0.0034324	73191	160511_QHF_FH_JSI9i_3	49.595	13.149			0.17725	0.32629	109.21	3	1	Plateau	1.1015	0.89466	NaN	1	0	Median	0.70255	0.82194	NaN	1	0	Median	0.1326	0.12953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	602020000	549260000	52765000	26623000	13633000	12990000	27371000	15327000	12044000	548030000	520300000	27731000	0	0	0	30219	1217	28597	187321;187322;187323	253101;253102;253103;253104	253104			4	
LFLDSLRK	1	Unmodified	990.58622	0.58621603	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.947	46.381	3	0.018397	38683	160511_QHF_FH_JSI10i_3	39.022	6.1295			0.36143	0.39742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36143	0.39742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29883000	17705000	12178000	0	0	0	29883000	17705000	12178000	0	0	0	0	0	0	30220	1193	28598	187324	253105	253105			1	
LFLEFER	0	Unmodified	952.50182	0.5018177	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	62.978	62.329	2	0.037728	54144	160511_QHF_FH_JSI11i_2	48.504	0			1.0791	1.0047	17.782	4	0	Median	1.2029	1.0337	NaN	1	0	Median	0.77805	0.94983	NaN	1	0	Median	0.96799	0.97659	NaN	1	0	Median	1.3833	1.3974	NaN	1	0	Median	301500000	154870000	146630000	55826000	27797000	28029000	58269000	29952000	28318000	79908000	47440000	32468000	107490000	49681000	57812000	30221	351	28599	187325;187326;187327;187328	253106	253106			1	
LFLEFERK	1	Unmodified	1080.5968	0.59678072	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	52.83	51.986	3	0.00058886	45778	160511_QHF_FH_JSI11i_3	80.165	58.718			0.96232	1.1264	43.96	4	1	Linear	1.1725	0.93234	NaN	1	0	Median	0.83732	0.97883	NaN	1	0	Median	1.106	1.0103	NaN	1	0	Median	0.40415	0.40504	NaN	1	1	Median	205640000	111910000	93733000	51726000	22623000	29103000	53655000	32248000	21407000	70619000	37577000	33043000	29640000	19460000	10180000	30222	351	28600	187329;187330;187331;187332	253107;253108;253109	253108			3	
LFLFHTSLPIAEAPGK	1	Unmodified	1739.961	0.9610423	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.61		2	7						8	4	4	4	5	86.201	82.112	2;3	3.4178E-88	41559	160513_QHF_FH_JSI11Kac_6	236.11	195.53			0.99656	0.94802	20.125	17	7	Median	1.1782	1.0043	19.62	4	1	Median	0.7447	0.8861	13.457	4	3	Median	0.98194	0.92258	11.325	4	1	Median	1.0603	1.0578	28.352	5	2	Median	8256600000	4314600000	3942000000	1539700000	666310000	873420000	1957400000	1177200000	780180000	2390500000	1323700000	1066700000	2369000000	1147300000	1221700000	30223	1814	28601	187333;187334;187335;187336;187337;187338;187339;187340;187341;187342;187343;187344;187345;187346;187347;187348;187349	253110;253111;253112;253113;253114;253115;253116;253117;253118;253119;253120;253121;253122;253123;253124;253125;253126;253127;253128;253129;253130;253131;253132;253133;253134;253135;253136;253137;253138	253119			29	
LFLFQIQK	1	Unmodified	1035.6117	0.6117025	3178	Q6ZMK1	CYHR1	Cysteine and histidine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.692	79.967	2	0.0061435	69430	160511_QHF_FH_JSI12i_3	70.268	50.631			0.97732	0.97551	6.6898	4	0	Median	1.2191	1.0046	NaN	1	0	Median	0.95794	1.0552	NaN	1	0	Median	0.99709	0.94726	NaN	1	0	Median	0.89414	0.90557	NaN	1	0	Median	170080000	79589000	90495000	40556000	16138000	24418000	29581000	14760000	14821000	37054000	18862000	18193000	62892000	29829000	33063000	30224	3178	28602	187350;187351;187352;187353	253139;253140;253141;253142	253142			4	
LFLFQLLR	0	Unmodified	1048.6433	0.64333698	627	O94921;Q00536	CDK14;CDK16	Cyclin-dependent kinase 14;Cyclin-dependent kinase 16	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	94.064	85.69	2	0.0013655	50144	160513_QHF_FH_JSI10Kac_6	99.919	83.766			1.0464	1.1012	17.426	4	0	Median	1.5706	1.3158	NaN	1	0	Median	1.0169	1.1985	NaN	1	0	Median	1.0767	1.0118	NaN	1	0	Median	0.8372	0.88997	NaN	1	0	Median	1024400000	486900000	537490000	193470000	80812000	112650000	371100000	186870000	184230000	358210000	168920000	189290000	101610000	50295000	51318000	30225	627	28603	187354;187355;187356;187357	253143;253144;253145	253145			3	
LFLIDFGLAK	1	Unmodified	1135.6641	0.664132	1633	P48729;Q8N752	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.44		5	3						4	3	3	2	4	98.172	95.067	2	1.7132E-08	49073	160513_QHF_FH_JSI10Kac_6	140.5	85.952			1.0366	1.0451	14.596	11	0	Median	1.2518	1.0451	5.2972	3	0	Median	0.92128	1.0588	18.116	3	0	Median	0.97051	0.95289	25.117	2	0	Median	0.84878	0.95134	18.043	3	0	Median	1279800000	624670000	655100000	213420000	91930000	121490000	364390000	192640000	171740000	305210000	149340000	155870000	396760000	190750000	206000000	30226	1633	28604	187358;187359;187360;187361;187362;187363;187364;187365;187366;187367;187368;187369	253146;253147;253148;253149;253150;253151;253152;253153;253154;253155;253156;253157;253158;253159;253160;253161;253162;253163	253163			18	
LFLINEQSPR	0	Unmodified	1215.6612	0.66117189	3077	Q6NW34	C3orf17	Uncharacterized protein C3orf17	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	55.323	55.202	2	0.010349	48989	160511_QHF_FH_JSI11i_3	57.598	21.655			2.2238	2.1494	26.831	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9119	1.778	NaN	1	1	Median	2.5865	2.5985	NaN	1	1	Median	184320000	55332000	128980000	0	0	0	0	0	0	77783000	31376000	46407000	106530000	23956000	82578000	30227	3077	28605	187370;187371	253164;253165	253164			2	
LFLIYYISTQQAPSEADLEQYKK	2	Unmodified	2747.4058	0.40579863	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			88.162	81.471	3	9.336E-20	44413	160513_QHF_FH_JSI9Kac_6	184.35	151.99			0.74646	0.86364	7.0267	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74646	0.86364	7.0267	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	265100000	158910000	106200000	47660000	47660000	0	217440000	111250000	106200000	0	0	0	0	0	0	30228	3785	28606	187372;187373;187374	253166;253167;253168	253166			3	
LFLKPTPNTVHYILTHFK	2	Unmodified	2168.2146	0.21463123	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	83.472	75.23	4;5	3.9275E-13	40796	160513_QHF_FH_JSI9Kac_6	132.62	107.11			0.94714	0.93298	7.3473	8	1	Median	1.0256	0.89149	7.0994	2	0	Median	0.74877	0.88722	6.4458	2	1	Median	1.0221	0.97958	5.7429	2	0	Median	0.83644	0.89324	10.798	2	0	Median	2754800000	1455300000	1299500000	541180000	203720000	337460000	1528600000	916820000	611830000	574340000	274220000	300130000	110610000	60544000	50068000	30229	1434	28607	187375;187376;187377;187378;187379;187380;187381;187382	253169;253170;253171;253172;253173;253174;253175;253176;253177;253178;253179;253180;253181;253182	253174			14	
LFLLPHK	1	Unmodified	866.53781	0.53780928	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.66		4	9						4	4	5	5	3	52.193	49.022	2;3	0.0029328	42706	160511_QHF_FH_JSI11i_3	64.776	62.097			0.93742	0.94552	25.019	15	4	Median	0.91017	0.78119	17.449	4	1	Median	0.69028	0.80412	36.239	5	3	Median	1.0546	0.99879	2.7594	3	0	Plateau	1.0598	1.0831	7.2567	3	0	Plateau	5391000000	2827800000	2563200000	1649700000	810840000	838840000	1179900000	697210000	482730000	922350000	445040000	477310000	1639100000	874720000	764340000	30230	2277	28608	187383;187384;187385;187386;187387;187388;187389;187390;187391;187392;187393;187394;187395;187396;187397;187398;187399	253183;253184;253185;253186;253187;253188;253189;253190;253191;253192;253193;253194;253195;253196;253197;253198;253199;253200;253201;253202;253203;253204;253205;253206;253207;253208;253209;253210;253211;253212;253213;253214;253215;253216;253217;253218;253219;253220;253221;253222;253223;253224	253185			42	
LFLLPHKDQR	1	Acetyl (K)	1307.735	0.73500553	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.45	55.784	3	0.0064448	30266	160513_QHF_FH_JSI11Kac_6	45.915	34.05			0.26366	0.25136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26366	0.25136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51078000	38986000	12092000	0	0	0	0	0	0	51078000	38986000	12092000	0	0	0	30231	2277	28609	187400	253225	253225	2371		1	
LFLLQDSGR	0	Unmodified	1047.5713	0.57129425	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	56.8	56.204	2	0.00049069	49824	160511_QHF_FH_JSI11i_3	79.713	28.377			1.0285	1.0162	18.47	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2173	1.3633	NaN	1	0	Median	1.0491	0.96959	NaN	1	0	Median	1.0153	1.0162	NaN	1	0	Median	202640000	81437000	121200000	0	0	0	21898000	10594000	11303000	87954000	36431000	51523000	92785000	34411000	58374000	30232	4878	28610	187401;187402;187403	253226;253227	253226			2	
LFLLQLIPR	0	Unmodified	1111.7118	0.7117509	281	O15360	FANCA	Fanconi anemia group A protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.828	86.436	2	8.8868E-05	48571	160513_QHF_FH_JSI11Kac_6	114.6	88			0.92153	0.96716	13.345	4	0	Median	1.1799	1.0007	NaN	1	0	Median	0.81351	0.93476	NaN	1	0	Median	0.82726	0.80275	NaN	1	0	Median	1.0265	1.1025	NaN	1	0	Median	372330000	191720000	180610000	97382000	42604000	54778000	110800000	62385000	48414000	100340000	56950000	43393000	63806000	29777000	34029000	30233	281	28611	187404;187405;187406;187407	253228;253229;253230;253231;253232;253233	253229			6	
LFLLQQPLAPSGLTLK	1	Unmodified	1738.0393	0.039292625	3070	Q6NTF9	RHBDD2	Rhomboid domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	101.24	101.17	2	2.6202E-35	90257	160511_QHF_FH_JSI11i_3	160.15	126.19			1.103	1.2003	4.25	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0663	1.2369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1411	1.1648	NaN	1	1	Median	372530000	181720000	190800000	0	0	0	123600000	64957000	58641000	0	0	0	248930000	116760000	132160000	30234	3070	28612	187408;187409;187410;187411	253234;253235;253236;253237	253234			4	
LFLNETQTQEITEDIPVK	1	Unmodified	2117.0892	0.089215523	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.713	10	8	3							5	4	6	6	86.952	86.456	2;3	3.1011E-209	78459	160511_QHF_FH_JSI10i_1	389.5	353.86			1.0292	1.0623	17.779	19	4	Median	1.1857	1.0322	10.908	4	0	Median	0.87949	1.0625	11.342	4	0	Median	1.0501	1.079	31.619	5	1	Median	1.0119	1.0674	7.8711	6	3	Median	1941000000	970650000	970390000	266630000	126780000	139850000	624470000	336920000	287550000	489420000	228250000	261170000	560520000	278700000	281820000	30235	1520	28613	187412;187413;187414;187415;187416;187417;187418;187419;187420;187421;187422;187423;187424;187425;187426;187427;187428;187429;187430;187431;187432	253238;253239;253240;253241;253242;253243;253244;253245;253246;253247;253248;253249;253250;253251;253252;253253;253254;253255;253256;253257;253258;253259;253260;253261;253262;253263;253264;253265;253266;253267;253268;253269;253270;253271;253272;253273;253274;253275;253276;253277;253278;253279;253280;253281;253282;253283;253284;253285;253286	253260			49	
LFLPFPLPLFAYR	0	Unmodified	1592.9119	0.91190727	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	1	2	3	2	100.95	93.967	2;3	3.2874E-40	52408	160513_QHF_FH_JSI11Kac_6	192.14	160.71			0.93256	0.89211	38.131	7	1	Median	0.72448	0.6308	NaN	1	0	Median	0.73805	0.86723	36.69	2	0	Median	0.90649	0.86739	3.9746	2	0	Median	1.4891	1.5979	6.889	2	1	Median	1729500000	921520000	808010000	347100000	206970000	140130000	636440000	325620000	310820000	683460000	362500000	320960000	62524000	26433000	36091000	30236	2767	28614	187433;187434;187435;187436;187437;187438;187439;187440	253287;253288;253289;253290;253291;253292;253293;253294;253295;253296	253287			10	
LFLPLILK	1	Unmodified	955.64703	0.64702537	2833	Q4G148	GXYLT1	Glucoside xylosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	101.24	101.16	2	0.0015829	90190	160511_QHF_FH_JSI11i_3	83.801	24.596			0.8941	0.78664	28.451	4	4	Median	0.93723	0.76524	NaN	1	1	Median	0.44761	0.50136	NaN	1	1	Median	0.85295	0.80863	NaN	1	1	Median	0.98361	0.98601	NaN	1	1	Median	379970000	213550000	166420000	114100000	63173000	50924000	103460000	60171000	43286000	56875000	33026000	23849000	105540000	57183000	48361000	30237	2833	28615	187441;187442;187443;187444;187445;187446;187447;187448	253297;253298;253299;253300;253301;253302;253303;253304	253298			8	
LFLQGPK	1	Unmodified	801.47487	0.47487467	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	38.504	37.512	2	0.011089	31131	160511_QHF_FH_JSI10i_3	72.021	50.474			0.95167	1.054	15.565	7	0	Median	1.4625	1.2456	21.778	2	0	Median	0.91284	1.0675	1.8093	2	0	Median	0.88394	0.89289	NaN	1	0	Median	0.92164	0.99162	8.5188	2	0	Median	1323000000	684890000	638120000	220560000	90178000	130390000	307150000	166940000	140210000	128380000	75021000	53361000	666920000	352750000	314170000	30238	1002	28616	187449;187450;187451;187452;187453;187454;187455	253305;253306;253307;253308;253309;253310;253311;253312	253306			8	
LFLQNNLIR	0	Unmodified	1129.6608	0.66077796	3327	Q86UN3	RTN4RL2	Reticulon-4 receptor-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	64.743	63.647	2	0.0021176	53333	160511_QHF_FH_JSI10i_3	66.087	41.932			0.88611	0.92782	5.1592	3	0	Median	1.1892	0.98172	NaN	1	0	Median	0.77997	0.92782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88611	0.88562	NaN	1	0	Median	209790000	112810000	96979000	70216000	31684000	38532000	77778000	43944000	33834000	0	0	0	61797000	37184000	24613000	30239	3327	28617	187456;187457;187458	253313;253314;253315	253314			3	
LFLSFSGSDVQNK	1	Unmodified	1440.7249	0.72489436	5686	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	67.206	66.91	2	1.7101E-05	59524	160511_QHF_FH_JSI11i_3	84.658	46.302			1.4318	1.4631	58.252	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4318	1.4631	58.252	2	2	Median	96731000	41555000	55176000	0	0	0	0	0	0	0	0	0	96731000	41555000	55176000	30240	5686	28618	187459;187460;187461;187462	253316;253317;253318;253319	253316			4	
LFLSHFGFLSLEALK	1	Unmodified	1720.9552	0.95522864	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		93.054	83.934	3	3.8418E-24	47315	160513_QHF_FH_JSI11Kac_6	150.34	127.97			1.1309	1.004	4.3871	2	1	Median	1.2371	1.0356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0338	0.9733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	303270000	145860000	157410000	136600000	57132000	79464000	0	0	0	166670000	88727000	77946000	0	0	0	30241	3367	28619	187463;187464	253320;253321	253320			2	
LFLSNMER	0	Unmodified	1008.5063	0.50625115	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		46.889	45.85	2	0.0034924	38417	160511_QHF_FH_JSI10i_3	72.138	35.953			0.92282	0.80062	18.871	5	1	Median	1.0487	0.87256	12.17	2	0	Median	0.74419	0.89728	26.847	2	0	Median	0.73442	0.68111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1010900000	566310000	444620000	334730000	162190000	172540000	294600000	158240000	136350000	381610000	245880000	135730000	0	0	0	30242	193	28620	187465;187466;187467;187468;187469	253322;253323;253324;253325	253323			4	
LFLSVPTEEPLK	1	Unmodified	1371.765	0.76496826	4110	Q96HH9	GRAMD3	GRAM domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	79.346	78.442	2	8.2041E-05	68894	160511_QHF_FH_JSI11i_2	93.111	66.596			1.0688	1.1025	21.826	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.27	1.2865	NaN	1	0	Median	0.89941	0.94482	NaN	1	1	Median	33723000	16283000	17440000	0	0	0	0	0	0	19782000	8652100	11130000	13941000	7631000	6309800	30243	4110	28621	187470;187471	253326;253327	253327			2	
LFLSYDYAVK	1	Unmodified	1217.6332	0.6332258	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	1	3	2	2	71.827	68.118	2	8.1612E-06	37074	160513_QHF_FH_JSI10Kac_6	106.6	78.201			1.0853	1.1802	25.297	8	3	Median	1.3412	1.1671	NaN	1	0	Median	1.0047	1.2261	43.13	3	3	Median	1.2151	1.2225	15.61	2	0	Median	0.95402	1.0569	17.191	2	0	Median	704400000	308140000	396260000	98106000	35071000	63034000	267030000	134380000	132650000	184530000	70569000	113960000	154730000	68119000	86608000	30244	5300	28622	187472;187473;187474;187475;187476;187477;187478;187479	253328;253329;253330;253331;253332;253333;253334;253335;253336;253337;253338;253339	253339			12	
LFLTMEINPK	1	Unmodified	1204.6526	0.65258104	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.621	75.378	2	0.015736	64954	160511_QHF_FH_JSI12i_2	51.066	27.995			0.59076	0.63623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59076	0.63623	NaN	1	1	Median	82751000	56908000	25843000	0	0	0	0	0	0	0	0	0	82751000	56908000	25843000	30245	2517	28623	187480	253340	253340			1	
LFLTMEINPK	1	Oxidation (M)	1220.6475	0.64749566	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				70.198	59.568	2	0.054406	30958	160513_QHF_FH_JSI9Kac_5	34.089	21.299			2.057	1.7098	NaN	1	0	Median	2.057	1.7098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2241300	884550	1356800	2241300	884550	1356800	0	0	0	0	0	0	0	0	0	30246	2517	28623	187481	253341	253341			1	
LFLVNNK	1	Unmodified	846.49634	0.49633839	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	39.632	38.833	2	0.019497	32964	160511_QHF_FH_JSI12i_3	58.246	40.479			1.0199	1.0378	3.5398	4	0	Median	1.2705	1.0342	NaN	1	0	Median	0.91529	1.0554	NaN	1	0	Median	1.0996	1.0414	NaN	1	0	Median	0.94602	0.9743	NaN	1	0	Median	919890000	399270000	520630000	112410000	37684000	74726000	114350000	58225000	56126000	253930000	102180000	151750000	439200000	201170000	238030000	30247	2673	28624	187482;187483;187484;187485	253342;253343;253344;253345;253346;253347;253348	253347			7	
LFLVQLQEK	1	Unmodified	1116.6543	0.6542956	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	69.898	69.011	2	2.2425E-08	59799	160511_QHF_FH_JSI12i_3	150.4	100.27			1.0268	1.0221	14.267	6	0	Median	1.0214	0.87824	NaN	1	0	Median	0.84453	1.0002	28.653	2	0	Median	1.0495	1.036	NaN	1	0	Median	0.97541	1.0258	2.4087	2	0	Median	1526100000	713240000	812830000	86203000	45805000	40398000	278310000	148290000	130020000	65508000	31720000	33789000	1096000000	487420000	608620000	30248	379	28625	187486;187487;187488;187489;187490;187491	253349;253350;253351;253352;253353;253354;253355;253356;253357;253358	253356			10	
LFLVYRPNTGK	1	Unmodified	1306.7398	0.73975656	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	59.311	50.014	3	0.019548	26207	160513_QHF_FH_JSI12Kac_6	37.426	29.026			0.78765	0.85709	11.837	4	1	Median	1.0368	0.89487	NaN	1	0	Median	0.70948	0.82091	NaN	1	0	Median	0.71234	0.70202	NaN	1	1	Median	0.87092	0.90889	NaN	1	0	Median	301460000	181200000	120260000	74348000	40438000	33910000	191080000	123120000	67961000	15540000	7137100	8402900	20491000	10507000	9984100	30249	16	28626	187492;187493;187494;187495	253359;253360;253361	253361			3	
LFLWSLR	0	Unmodified	933.54362	0.54362294	2238	Q05DH4	FAM160A1	Protein FAM160A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	83.705	75.463	2	0.0010419	41305	160513_QHF_FH_JSI11Kac_6	111.28	0			1.3649	1.1464	22.982	4	0	Linear	1.36	1.1608	NaN	1	0	Median	0.6333	0.73419	NaN	1	0	Median	1.2054	1.1322	NaN	1	0	Median	1.1081	1.1894	NaN	1	0	Median	429270000	202780000	226490000	147640000	65066000	82573000	51192000	33976000	17216000	140600000	60998000	79605000	89834000	42735000	47099000	30250	2238	28627	187496;187497;187498;187499;187500	253362;253363;253364;253365;253366;253367;253368;253369;253370	253363			9	
LFLYTSIALK	1	Unmodified	1167.6903	0.69034675	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.212	76.619	2	0.0035937	42336	160513_QHF_FH_JSI10Kac_6	68.016	43.895			0.82715	0.98209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82715	0.98209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89696000	47026000	42670000	0	0	0	89696000	47026000	42670000	0	0	0	0	0	0	30251	3588	28628	187501	253371	253371			1	
LFMAQALQEYNN	0	Unmodified	1440.6708	0.6707503	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.54	4	4	4				1	4	3	5	5	5	5	78.922	74.518	2	1.1986E-06	39071	160513_QHF_FH_JSI11Kac_6	119.86	106.2			1.0819	1.0887	25.107	20	6	Median	1.4727	1.21	23.102	5	1	Median	0.91392	1.135	20.415	5	2	Median	0.96286	0.95399	31.141	5	1	Median	0.91532	1.0249	29.799	5	2	Median	1709500000	813390000	896130000	322940000	136780000	186160000	437330000	225670000	211660000	485250000	229510000	255740000	464000000	221430000	242570000	30252	283	28629	187502;187503;187504;187505;187506;187507;187508;187509;187510;187511;187512;187513;187514;187515;187516;187517;187518;187519;187520;187521	253372;253373;253374;253375;253376;253377;253378;253379;253380;253381;253382;253383;253384;253385;253386;253387;253388;253389;253390;253391;253392;253393;253394;253395;253396;253397;253398;253399;253400	253379			29	
LFMAQALQEYNN	0	Oxidation (M)	1456.6657	0.66566492	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			68.193	57.532	2	0.039849	28933	160513_QHF_FH_JSI10Kac_5	37.112	30.422			0.61577	0.71824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61577	0.71824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2646100	1775500	870590	0	0	0	2646100	1775500	870590	0	0	0	0	0	0	30253	283	28629	187522	253401	253401			1	
LFMEMNQK	1	Unmodified	1039.4831	0.48307287	2570;2394	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2								2	3	2	41.262	40.659	2	0.0053792	35880	160511_QHF_FH_JSI10i_2	63.301	43.665			1.72	1.6182	17.583	5	4	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.477	NaN	1	1	Median	1.8772	1.8052	15.468	2	2	Median	1.3994	1.4385	20.521	2	1	Median	750420000	346660000	403760000	0	0	0	199530000	90651000	108880000	328480000	142170000	186310000	222400000	113840000	108570000	30254	2570;2394	28630	187523;187524;187525;187526;187527;187528;187529	253402;253403;253404;253405;253406;253407;253408	253407			7	
LFMILWLK	1	Unmodified	1062.63	0.6299951	5711;4187	Q9Y696;O15247;Q9NZA1;Q96NY7	CLIC4;CLIC2;CLIC5;CLIC6	Chloride intracellular channel protein 4;Chloride intracellular channel protein 2;Chloride intracellular channel protein 5;Chloride intracellular channel protein 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	3	3	2	97.817	92.371	2	0.00038521	47094	160513_QHF_FH_JSI12Kac_6	114.54	99.389			1.0394	1.0063	69.337	9	4	Median	0.97901	0.82208	2.7945	2	0	Median	0.82882	1.0063	71.012	3	2	Median	1.0968	1.0518	144.97	2	2	Median	1.5394	1.5744	38.068	2	0	Median	1965900000	935870000	1030000000	343380000	156860000	186520000	724590000	415980000	308610000	505900000	220690000	285200000	392010000	142340000	249670000	30255	5711;4187	28631	187530;187531;187532;187533;187534;187535;187536;187537;187538;187539	253409;253410;253411;253412;253413;253414;253415;253416;253417;253418;253419;253420;253421;253422	253419			14	
LFMILWLK	1	Oxidation (M)	1078.6249	0.62490972	5711;4187	Q9Y696;O15247;Q9NZA1;Q96NY7	CLIC4;CLIC2;CLIC5;CLIC6	Chloride intracellular channel protein 4;Chloride intracellular channel protein 2;Chloride intracellular channel protein 5;Chloride intracellular channel protein 6	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.271	81.964	2	4.0633E-05	43807	160513_QHF_FH_JSI12Kac_6	129.16	112.38			1.0141	1.0284	14.445	4	0	Median	1.5657	1.312	NaN	1	0	Median	0.80178	0.94041	NaN	1	0	Median	1.0968	1.0541	NaN	1	0	Median	0.93768	1.0033	NaN	1	0	Median	629470000	305740000	323740000	178300000	70916000	107380000	198000000	99314000	98688000	116140000	56830000	59313000	137030000	78677000	58356000	30256	5711;4187	28631	187540;187541;187542;187543	253423;253424;253425;253426;253427;253428;253429;253430	253427		2406	8	
LFMLLLEK	1	Unmodified	1005.5933	0.59327524	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	3	2	4	88.908	83.122	2	0.00073955	42074	160513_QHF_FH_JSI12Kac_6	98.299	31.617			0.30798	0.31858	133.87	10	9	Median	1.0746	0.9161	190.73	2	2	Median	1.2714	1.4935	166.87	3	3	Plateau	0.55699	0.52933	140.74	2	1	Median	0.21418	0.22715	139.15	3	3	Median	5573300000	2827500000	2745700000	1292700000	588500000	704180000	2008800000	944180000	1064600000	1044300000	526900000	517440000	1227400000	767960000	459470000	30257	2734	28632	187544;187545;187546;187547;187548;187549;187550;187551;187552;187553;187554	253431;253432;253433;253434;253435;253436;253437;253438;253439;253440;253441;253442	253440			12	
LFMLLLEK	1	Oxidation (M)	1021.5882	0.58818987	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									3	2			1	80.378	71.341	2	0.0082668	37664	160513_QHF_FH_JSI12Kac_6	81.191	26.986			2.3621	2.2316	65.858	2	2	Median	1.6526	1.4008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.376	3.5551	NaN	1	1	Median	234460000	59646000	174810000	160430000	43004000	117430000	0	0	0	0	0	0	74028000	16643000	57385000	30258	2734	28632	187555;187556;187557	253443;253444;253445	253445		2114	3	
LFMSLLEDTLSK	1	Unmodified	1395.732	0.73195357	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	98.937	98.924	2	9.5171E-05	88049	160511_QHF_FH_JSI11i_3	104.22	85.91			0.94197	0.97215	89.009	4	4	Linear	0.18459	0.16077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39401	0.37022	NaN	1	1	Median	0.84599	0.86763	64.748	2	2	Median	146680000	99844000	46839000	24311000	19426000	4885000	0	0	0	45952000	34672000	11280000	76421000	45746000	30674000	30259	3331	28633	187558;187559;187560;187561	253446;253447;253448;253449	253446			4	
LFMVLWLK	1	Unmodified	1048.6143	0.61434504	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	5.3			4						15	6	6	3	4	97.436	91.354	2	5.1256E-05	45633	160513_QHF_FH_JSI12Kac_6	129.16	105.01			0.83831	0.92837	24.421	16	2	Median	0.75701	0.65862	16.747	4	1	Median	0.75768	0.82739	8.4958	5	0	Median	1.2481	1.1894	2.5792	3	0	Median	0.95642	1.0115	15.762	4	1	Median	20811000000	10908000000	9903200000	4159800000	2146600000	2013200000	7917900000	4869100000	3048700000	5820000000	2637500000	3182600000	2913700000	1255000000	1658700000	30260	119	28634	187562;187563;187564;187565;187566;187567;187568;187569;187570;187571;187572;187573;187574;187575;187576;187577;187578;187579;187580	253450;253451;253452;253453;253454;253455;253456;253457;253458;253459;253460;253461;253462;253463;253464;253465;253466;253467;253468;253469;253470;253471;253472;253473;253474;253475;253476;253477;253478;253479;253480;253481	253467			32	
LFMVLWLK	1	Oxidation (M)	1064.6093	0.60925966	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.3			3					1	10	4	2	4	4	89.225	81.574	2	4.0633E-05	41623	160513_QHF_FH_JSI12Kac_6	129.16	95.363			1.0262	0.9846	25.942	13	1	Median	0.96768	0.81185	23.971	4	0	Median	0.66155	0.75867	32.617	2	1	Median	1.1503	1.0861	8.5161	3	0	Median	1.1456	1.1868	15.488	4	0	Median	14116000000	6148000000	7967600000	4612100000	1849400000	2762700000	3949200000	1796600000	2152600000	2351200000	1116500000	1234700000	3203200000	1385500000	1817600000	30261	119	28634	187581;187582;187583;187584;187585;187586;187587;187588;187589;187590;187591;187592;187593;187594	253482;253483;253484;253485;253486;253487;253488;253489;253490;253491;253492;253493;253494;253495;253496	253491		51	15	
LFNAIIHK	1	Unmodified	954.56509	0.56508666	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	38.945	38.323	3	0.0032251	32532	160511_QHF_FH_JSI12i_3	60.59	44.387			0.88077	0.92416	138.98	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88077	0.92416	138.98	2	2	Median	44217000	29813000	14404000	0	0	0	8545100	8545100	0	0	0	0	35672000	21268000	14404000	30262	2199	28635	187595;187596;187597	253497;253498;253499	253499			3	
LFNAIIHR	0	Unmodified	982.57123	0.57123467	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	47.187	38.576	3	0.00078972	21307	160513_QHF_FH_JSI10Kac_6	73.248	59.669			1.3772	1.6233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3772	1.6233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35312000	19545000	15768000	0	0	0	35312000	19545000	15768000	0	0	0	0	0	0	30263	2636	28636	187598;187599	253500;253501;253502	253502			3	
LFNDSSPVVLEESWDALNAITK	1	Unmodified	2447.222	0.22202061	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	102.14	102.02	3	9.6559E-06	89838	160511_QHF_FH_JSI11i_2	64.962	57.51			1.2249	1.3558	2.8106	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0792	1.3149	NaN	1	0	Median	1.3464	1.3909	NaN	1	1	Median	1.2249	1.3558	NaN	1	1	Median	253100000	106880000	146230000	0	0	0	84384000	41434000	42950000	91058000	33047000	58011000	77662000	32397000	45266000	30264	3860	28637	187600;187601;187602	253503;253504;253505	253504			3	
LFNEHIEALTK	1	Unmodified	1313.698	0.69795133	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	49.785	49.002	2;3	6.7351E-06	42980	160511_QHF_FH_JSI9i_2	104.87	82.82			0.84471	0.94872	51.662	6	2	Median	0.81149	0.69377	NaN	1	1	Median	0.73315	0.91051	NaN	1	0	Median	1.527	1.5182	92.278	2	1	Median	1.0387	1.1103	16.425	2	0	Median	764380000	357920000	406470000	87286000	39536000	47750000	167770000	104770000	62995000	321540000	121940000	199600000	187790000	91672000	96122000	30265	203	28638	187603;187604;187605;187606;187607;187608	253506;253507;253508;253509;253510;253511;253512	253506			7	
LFNESHGIFLGLQR	0	Unmodified	1629.8627	0.86272524	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	3	1	70.158	69.064	2;3	2.2115E-05	57950	160511_QHF_FH_JSI10i_3	111.74	87.182			0.99256	0.97618	5.543	6	1	Median	1.2243	1.005	2.6611	2	1	Median	0.80061	0.93159	8.9231	2	0	Median	1.0411	0.96622	NaN	1	0	Median	0.94628	0.93533	NaN	1	0	Median	402980000	209850000	193130000	145870000	61943000	83924000	112130000	69371000	42760000	99101000	54348000	44753000	45883000	24186000	21696000	30266	4487	28639	187609;187610;187611;187612;187613;187614;187615;187616;187617;187618	253513;253514;253515;253516;253517;253518;253519;253520;253521;253522;253523;253524;253525;253526;253527	253518			14	
LFNEVQEK	1	Unmodified	1005.5131	0.51311067	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.221	23.868	2	0.022691	19814	160511_QHF_FH_JSI11i_2	54.776	35.262			0.75425	0.76419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75425	0.76419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110330000	59403000	50925000	0	0	0	0	0	0	110330000	59403000	50925000	0	0	0	30267	4623	28640	187619	253528	253528			1	
LFNGTFLK	1	Unmodified	938.52255	0.52255314	2136	P86791;P86790	CCZ1;CCZ1B	Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B	yes	no	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	57.569	56.678	2	0.013929	48586	160511_QHF_FH_JSI12i_3	51.864	16.37			0.9375	1.009	57.871	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3214	1.5192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66513	0.67017	NaN	1	0	Median	111320000	56962000	54355000	0	0	0	28513000	17021000	11492000	0	0	0	82804000	39941000	42863000	30268	2136	28641	187620;187621	253529;253530	253530			2	
LFNHANQEVQR	0	Unmodified	1354.6742	0.67419619	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							3	2			14.333	13.407	2;3	1.166E-10	10476	160511_QHF_FH_JSI9i_3	138.99	91.098			0.99368	0.95545	39.406	5	2	Median	1.4915	1.2165	44.84	3	2	Median	0.74289	0.84693	17.05	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	361290000	174160000	187130000	183300000	67014000	116280000	177990000	107140000	70851000	0	0	0	0	0	0	30269	5608	28642	187622;187623;187624;187625;187626	253531;253532;253533;253534;253535	253533			5	
LFNHLSAVSESIQALGWVAMAPK	1	Unmodified	2468.2886	0.28860081	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	97.296	92.489	3	5.1404E-90	50012	160513_QHF_FH_JSI10Kac_6	225.9	208.97			0.87533	0.87654	29.927	7	1	Median	1.2494	1.0315	21.388	2	0	Median	0.54659	0.64321	NaN	1	0	Median	0.991	0.93077	42.276	2	1	Median	0.69531	0.7143	28.947	2	0	Median	3749200000	1977200000	1772000000	487270000	188690000	298580000	870690000	575490000	295210000	1107600000	528710000	578880000	1283600000	684280000	599340000	30270	2169	28643	187627;187628;187629;187630;187631;187632;187633	253536;253537;253538;253539;253540;253541;253542;253543;253544;253545;253546;253547	253547			12	
LFNHLSAVSESIQALGWVAMAPK	1	Oxidation (M)	2484.2835	0.28351543	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			3						3	2	2		2	96.167	92.134	3	2.762E-48	45937	160513_QHF_FH_JSI9Kac_6	179.41	156.83			0.91768	0.86232	14.004	6	0	Median	0.99711	0.82505	1.8897	2	0	Median	0.72653	0.86253	8.1898	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97936	1.0232	19.834	2	0	Median	1045500000	553190000	492330000	247780000	117960000	129830000	409950000	244680000	165270000	0	0	0	387780000	190550000	197240000	30271	2169	28643	187634;187635;187636;187637;187638;187639	253548;253549;253550;253551;253552;253553;253554;253555	253551		1820	8	
LFNIHED	0	Unmodified	886.41848	0.418482	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	1	2	2	39.229	35.205	2	0.010159	31122	160511_QHF_FH_JSI10i_2	76.035	67.881			1.1179	1.1519	13.122	6	1	Median	1.4182	1.2228	NaN	1	0	Median	0.83314	1.0362	NaN	1	0	Median	1.0483	1.0611	3.1648	2	1	Median	1.2145	1.3513	8.8515	2	0	Median	1473100000	696210000	776900000	290630000	113080000	177550000	323630000	178590000	145040000	499160000	238580000	260590000	359680000	165970000	193710000	30272	736	28644	187640;187641;187642;187643;187644;187645	253556;253557;253558;253559;253560;253561;253562;253563	253563			8	
LFNPLIR	0	Unmodified	871.52797	0.52797287	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	59.783	58.956	2	0.036298	48512	160511_QHF_FH_JSI9i_3	49.211	17.632			1.2168	1.1301	9.0029	4	0	Median	1.3561	1.0973	NaN	1	0	Median	0.83916	0.96618	NaN	1	0	Median	1.3009	1.1639	NaN	1	0	Median	1.1381	1.1747	NaN	1	0	Median	206950000	98190000	108760000	57267000	26451000	30816000	51922000	27607000	24315000	47868000	22776000	25092000	49894000	21356000	28538000	30273	5656	28645	187646;187647;187648;187649	253564	253564			1	
LFNPNDDGKEEPPTTLLWVQYYLAQHYDK	2	Unmodified	3493.683	0.68303613	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.741	84.39	4	6.8725E-101	47149	160513_QHF_FH_JSI11Kac_6	230.69	216.85			0.92207	0.87607	11.477	4	0	Median	0.96489	0.8275	NaN	1	0	Median	0.77427	0.91686	NaN	1	0	Median	0.88114	0.8371	NaN	1	0	Median	1.0131	1.0609	NaN	1	0	Median	4023700000	2065000000	1958700000	590250000	278000000	312260000	1370700000	729030000	641660000	777860000	435270000	342590000	1284900000	622690000	662240000	30274	4518	28646	187650;187651;187652;187653	253565;253566;253567;253568;253569;253570;253571	253565			7	
LFNPPEESEK	1	Unmodified	1188.5663	0.56626845	4961	Q9NRP2	CMC2	COX assembly mitochondrial protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	2	3	30.6	29.918	2	0.00038059	26353	160511_QHF_FH_JSI11i_1	76.345	50.895			0.86136	0.913	16.964	6	1	Median	1.278	1.0449	NaN	1	0	Median	0.78176	0.91068	NaN	1	0	Median	0.88019	0.86999	7.1848	2	0	Median	0.7142	0.76572	26.569	2	1	Median	763960000	413980000	349980000	124470000	49458000	75011000	155330000	89630000	65702000	233470000	125120000	108360000	250680000	149780000	100910000	30275	4961	28647	187654;187655;187656;187657;187658;187659;187660	253572;253573;253574;253575;253576;253577;253578;253579;253580	253572			9	
LFNQINIS	0	Unmodified	947.50763	0.50763136	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	62.249	61.613	2	0.0071638	55946	160511_QHF_FH_JSI11i_1	60.358	43.394			0.79591	0.84886	9.2544	4	0	Median	1.0746	0.88346	NaN	1	0	Median	0.69045	0.82193	NaN	1	0	Median	0.89939	0.87667	NaN	1	0	Median	0.70433	0.72329	NaN	1	0	Median	450870000	223200000	227670000	110270000	44819000	65450000	132620000	73461000	59161000	109640000	54804000	54838000	98336000	50116000	48220000	30276	3905	28648	187661;187662;187663;187664	253581;253582;253583;253584;253585;253586	253582			6	
LFNSLLLGPTASNNK	1	Unmodified	1587.8621	0.86205654	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	73.134	72.333	2;3	4.8535E-05	62820	160511_QHF_FH_JSI12i_3	87.647	55.58			1.0824	1.0931	17.197	8	1	Median	1.3381	1.0931	1.0804	2	0	Median	0.80852	0.90272	35.222	2	1	Median	1.0824	1.0146	3.6864	2	0	Median	1.0855	1.1737	7.7248	2	0	Median	396800000	191320000	205480000	76897000	26108000	50789000	51701000	27399000	24302000	117030000	59803000	57223000	151180000	78010000	73169000	30277	3239	28649	187665;187666;187667;187668;187669;187670;187671;187672	253587;253588;253589;253590;253591;253592;253593;253594;253595;253596;253597;253598	253597			11	
LFNTAVCESK	1	Unmodified	1167.5594	0.55940893	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.453	30.073	2	0.062987	25476	160511_QHF_FH_JSI11i_2	32.898	17.236			0.94653	0.94379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94653	0.94379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52355000	31319000	21036000	0	0	0	0	0	0	52355000	31319000	21036000	0	0	0	30278	4518	28650	187673	253599	253599			1	
LFPADTSPSTATK	1	Unmodified	1334.6718	0.67179615	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.175	37.556	2	0.00063589	33808	160511_QHF_FH_JSI11i_1	69.01	44.087			0.93252	0.96786	16.659	4	1	Median	0.87366	0.72083	NaN	1	0	Median	0.82713	0.96244	NaN	1	0	Median	0.99534	0.9733	NaN	1	0	Median	1.029	1.0542	NaN	1	1	Median	185450000	107240000	78213000	58060000	36394000	21665000	39979000	21476000	18502000	56161000	35044000	21117000	31254000	14325000	16928000	30279	3086	28651	187674;187675;187676;187677	253600;253601;253602;253603;253604;253605	253600			6	
LFPDIPIGYSGHETGIAISVAAVALGAK	1	Unmodified	2766.4956	0.4956167	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.2	6.37			3						2	1		2	2	99.734	96.046	3	9.7953E-59	49737	160513_QHF_FH_JSI9Kac_6	176.44	158.7			1.4419	1.3631	25.425	5	2	Median	1.3449	1.1649	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.28	1.2082	17.052	2	0	Median	1.7852	1.837	7.4336	2	2	Median	1452500000	572250000	880290000	243770000	121110000	122660000	0	0	0	340660000	139680000	200980000	868110000	311460000	556650000	30280	4943	28652	187678;187679;187680;187681;187682	253606;253607;253608;253609;253610;253611	253609			5	
LFPDTPLALDANK	1	Unmodified	1413.7504	0.75038083	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	5.06	10	9	3				2	3		6	7	6	8	76.673	74.092	2;3	2.2654E-05	65813	160511_QHF_FH_JSI11i_2	129.88	103.83			0.87399	0.96313	21.991	26	5	Median	1.312	1.1269	9.8621	5	0	Median	0.84046	1.0201	21.005	7	1	Median	0.88012	0.88668	24.166	6	2	Median	0.78056	0.81422	20.481	8	2	Median	2609000000	1333500000	1275600000	455880000	195980000	259900000	560230000	307100000	253140000	902660000	457040000	445620000	690260000	373360000	316900000	30281	2325	28653	187683;187684;187685;187686;187687;187688;187689;187690;187691;187692;187693;187694;187695;187696;187697;187698;187699;187700;187701;187702;187703;187704;187705;187706;187707;187708;187709	253612;253613;253614;253615;253616;253617;253618;253619;253620;253621;253622;253623;253624;253625;253626;253627;253628;253629;253630;253631;253632;253633;253634;253635;253636;253637;253638;253639;253640;253641;253642;253643;253644;253645;253646;253647;253648	253638			37	
LFPDTPLALDANKK	2	Unmodified	1541.8453	0.84534384	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	3.45		4	7					1		2	2	5	3	65.754	64.265	2;3	9.9721E-06	55435	160511_QHF_FH_JSI12i_3	108.23	101.19			1.0416	1.036	19.038	12	3	Median	1.2511	1.0636	6.1837	2	1	Median	0.93961	1.1284	9.63	2	0	Median	1.0434	0.95873	24.703	5	2	Median	0.97834	1.0149	17.026	3	0	Median	1773600000	920060000	853530000	150020000	60727000	89293000	192200000	89004000	103200000	518000000	276450000	241550000	913370000	493880000	419490000	30282	2325	28654	187710;187711;187712;187713;187714;187715;187716;187717;187718;187719;187720;187721	253649;253650;253651;253652;253653;253654;253655;253656;253657;253658;253659;253660;253661;253662;253663;253664;253665	253662			17	
LFPEPLLPK	1	Unmodified	1052.627	0.62701821	3244	Q7RTP6	MICAL3	Protein-methionine sulfoxide oxidase MICAL3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.089	74.23	2	0.013505	65217	160511_QHF_FH_JSI11i_2	46.426	15.136			0.98774	1.0248	20.901	4	1	Median	1.3612	1.1524	NaN	1	1	Median	1.078	1.3714	NaN	1	0	Median	0.90499	0.91127	NaN	1	0	Median	0.83017	0.87943	NaN	1	0	Median	59608000	30103000	29506000	9058800	3780400	5278400	12034000	6238900	5795200	24429000	13238000	11191000	14086000	6845200	7241300	30283	3244	28655	187722;187723;187724;187725	253666;253667;253668;253669	253669			4	
LFPETWTAEK	1	Unmodified	1220.6077	0.60773933	5176	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	59.075	58.171	2	0.0011253	50436	160511_QHF_FH_JSI11i_2	78.516	47.78			0.94145	1.0397	2.6119	3	3	Median	NaN	NaN	NaN	0	0	Median	0.87729	1.0532	NaN	1	1	Median	1.0015	1.0016	NaN	1	1	Median	0.94145	1.0397	NaN	1	1	Median	252270000	131140000	121120000	0	0	0	74425000	34631000	39794000	103210000	52506000	50706000	74631000	44006000	30625000	30284	5176	28656	187726;187727;187728	253670;253671;253672	253671			3	
LFPGFEIETVK	1	Unmodified	1278.686	0.68598966	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.77	82.016	2	3.7313E-06	70931	160511_QHF_FH_JSI12i_2	111.65	60.774			0.8965	0.96454	16.4	4	0	Median	0.90281	0.76528	NaN	1	0	Median	0.89023	1.1177	NaN	1	0	Median	0.88787	0.90847	NaN	1	0	Median	0.91579	1.0241	NaN	1	0	Median	553920000	272000000	281920000	91951000	41348000	50603000	105390000	53158000	52234000	192300000	102310000	89989000	164280000	75192000	89090000	30285	900	28657	187729;187730;187731;187732	253673;253674;253675;253676;253677;253678;253679	253673			7	
LFPGLAIK	1	Unmodified	857.53747	0.53747492	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	66.817	65.999	2	0.0057109	57011	160511_QHF_FH_JSI12i_3	64.803	31.065			0.7977	0.73921	27.111	4	0	Median	0.95442	0.76389	NaN	1	0	Median	0.9153	1.0469	NaN	1	0	Median	0.57146	0.54091	NaN	1	0	Median	0.69522	0.71533	NaN	1	0	Median	715770000	408800000	306970000	154590000	75721000	78866000	127270000	71834000	55434000	125260000	78430000	46826000	308660000	182820000	125840000	30286	4300	28658	187733;187734;187735;187736	253680;253681;253682;253683	253683			4	
LFPGSPAIYK	1	Unmodified	1091.6015	0.60153174	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	57.378	56.317	2	0.0012858	49708	160511_QHF_FH_JSI10i_2	77.732	49.22			0.35377	0.35925	45.99	5	5	Median	0.60841	0.51226	82.153	2	2	Median	0.3664	0.4462	NaN	1	1	Median	0.35377	0.35925	NaN	1	1	Median	0.29419	0.32572	NaN	1	1	Median	1112300000	818670000	293590000	369000000	248730000	120270000	263770000	194890000	68883000	261100000	194920000	66176000	218390000	180130000	38259000	30287	1685;31;191	28659	187737;187738;187739;187740;187741	253684;253685;253686;253687;253688	253688			5	
LFPHVTPK	1	Unmodified	937.53854	0.53853756	5671	Q9Y5P4	COL4A3BP	Collagen type IV alpha-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		3	0			3							1	1	1		32.262	31.329	3	0.0010834	26764	160511_QHF_FH_JSI11i_3	68.224	43.301			1.3608	1.4358	19.759	3	0	Median	1.3608	1.0984	NaN	1	0	Median	1.2529	1.4358	NaN	1	0	Median	1.7575	1.6152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160360000	65289000	95074000	59439000	29105000	30335000	49476000	17547000	31929000	51448000	18638000	32810000	0	0	0	30288	5671	28660	187742;187743;187744	253689;253690	253689			2	
LFPIVEAMQK	1	Unmodified	1174.642	0.64201635	3591	Q8NBI6	XXYLT1	Xyloside xylosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.561	76.794	2	4.6925E-05	66535	160511_QHF_FH_JSI12i_3	93.551	62.178			0.8588	0.78484	28.763	4	3	Median	0.96144	0.78534	NaN	1	1	Median	1.0347	1.2146	NaN	1	1	Median	0.64431	0.60746	NaN	1	1	Median	0.76712	0.78434	NaN	1	0	Median	181390000	102110000	79279000	27243000	16480000	10762000	26898000	13149000	13749000	57751000	33376000	24375000	69502000	39109000	30393000	30289	3591	28661	187745;187746;187747;187748	253691;253692;253693;253694;253695;253696	253694			6	
LFPKGVFTK	2	Acetyl (K)	1077.6223	0.62226719	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.259	65.922	2	0.041373	35945	160513_QHF_FH_JSI11Kac_6	53.775	9.967			0.042284	0.041716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.042284	0.041716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16052000	15370000	681940	0	0	0	0	0	0	16052000	15370000	681940	0	0	0	30290	1333	28662	187749	253697	253697	1260		1	
LFPLFVLALLK	1	Unmodified	1272.821	0.82096699	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	102.02	95.273	2	1.3095E-10	52955	160513_QHF_FH_JSI11Kac_6	129.47	112.03			0.42491	0.37729	54.988	5	5	Median	0.42491	0.37729	NaN	1	1	Median	0.26702	0.31738	NaN	1	1	Median	0.17966	0.16949	NaN	1	1	Median	0.57926	0.59805	33.953	2	2	Median	5279500000	3272400000	2007100000	2638100000	1594600000	1043500000	2173400000	1334800000	838610000	218180000	182270000	35908000	249810000	160760000	89041000	30291	700	28663	187750;187751;187752;187753;187754	253698;253699;253700;253701;253702	253698			5	
LFPLIQAMHPTLAGK	1	Oxidation (M)	1651.912	0.91198362	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	6	3	3	3	71.468	68.343	2;3	9.679E-06	57953	160511_QHF_FH_JSI10i_3	121.42	110.19			1.1365	1.0754	19.487	15	2	Median	1.2058	1.0184	13.136	6	1	Median	0.81708	0.94763	28.661	3	0	Median	1.1365	1.0479	17.083	3	1	Plateau	0.96701	0.99753	23.65	3	0	Plateau	3955000000	1979500000	1975500000	1337000000	602670000	734380000	903870000	494260000	409610000	711100000	335860000	375240000	1003000000	546750000	456280000	30292	1009;4688	28664	187755;187756;187757;187758;187759;187760;187761;187762;187763;187764;187765;187766;187767;187768;187769	253703;253704;253705;253706;253707;253708;253709;253710;253711;253712;253713;253714;253715;253716;253717;253718;253719;253720;253721;253722;253723	253710		596	21	
LFPLIQAMHPTLAGK	1	Unmodified	1635.9171	0.917069	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	4.96		4	11						3	4	5	4	5	85.548	83.339	2;3	5.3445E-40	73820	160511_QHF_FH_JSI12i_3	224.42	204.12			0.96871	0.96294	105.62	17	5	Median	1.1975	0.98681	191.81	4	1	Median	0.81942	1.007	102.86	5	4	Median	0.97106	0.92802	7.2224	4	0	Median	0.85709	0.88737	27.898	4	0	Median	15477000000	7332700000	8144000000	3960100000	1595300000	2364800000	3906300000	2111400000	1795000000	3575100000	1562800000	2012300000	4035100000	2063200000	1971900000	30293	1009;4688	28664	187770;187771;187772;187773;187774;187775;187776;187777;187778;187779;187780;187781;187782;187783;187784;187785;187786;187787	253724;253725;253726;253727;253728;253729;253730;253731;253732;253733;253734;253735;253736;253737;253738;253739;253740;253741;253742;253743;253744;253745;253746;253747;253748;253749;253750;253751;253752;253753;253754;253755;253756;253757;253758;253759;253760;253761;253762;253763;253764;253765;253766;253767;253768;253769;253770;253771;253772;253773;253774;253775;253776	253773			53	
LFPLIQTMHSNLAGK	1	Unmodified	1668.9021	0.90214722	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.69			11						2	4	2	4	3	77.108	75.074	2;3	1.2161E-29	62563	160511_QHF_FH_JSI9i_3	204.17	174.7			0.99688	0.91964	37.245	12	5	Median	1.1434	0.90064	9.5296	3	0	Plateau	0.76587	0.90039	5.9439	2	0	Median	1.0033	0.94792	47.254	4	3	Median	0.83068	0.83741	60.602	3	2	Median	4650000000	2493100000	2156800000	1256500000	645510000	611040000	918120000	570460000	347660000	1572600000	761320000	811250000	902720000	515830000	386900000	30294	2385	28665	187788;187789;187790;187791;187792;187793;187794;187795;187796;187797;187798;187799;187800	253777;253778;253779;253780;253781;253782;253783;253784;253785;253786;253787;253788;253789;253790;253791;253792;253793;253794;253795;253796;253797;253798;253799;253800;253801;253802;253803;253804;253805;253806;253807;253808;253809;253810	253800			34	
LFPLIQTMHSNLAGK	1	Oxidation (M)	1684.8971	0.89706184	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.57	6.43			4						3	2	1	1	3	66.007	61.522	3	2.2893E-05	50614	160511_QHF_FH_JSI9i_3	112.02	101.38			0.98349	0.92568	37.82	7	2	Median	0.97161	0.80376	17.419	2	1	Median	0.82936	0.9739	NaN	1	0	Median	0.98349	0.92568	NaN	1	0	Median	0.99315	1.0832	63.195	3	1	Median	595370000	324560000	270810000	217680000	104300000	113380000	199620000	123060000	76564000	28931000	17146000	11785000	149140000	80058000	69080000	30295	2385	28665	187801;187802;187803;187804;187805;187806;187807	253811;253812;253813;253814;253815;253816;253817;253818;253819;253820;253821;253822	253816		1940	12	
LFPLLATAYAFQFVGAYMK	1	Unmodified	2150.1275	0.12745571	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	4.02			1	1					8	2	4	2	2	101.92	94.236	2;3	1.0524E-156	53009	160513_QHF_FH_JSI11Kac_6	332.42	297.46			0.76347	0.78044	20.235	10	1	Median	1.0862	0.92062	20.095	2	0	Median	0.48664	0.58373	25.036	4	1	Linear	0.80564	0.78802	4.6325	2	0	Median	0.62686	0.67141	17.62	2	0	Median	3209800000	1887200000	1322600000	1628100000	896050000	732050000	1184900000	776930000	407950000	272400000	136730000	135670000	124380000	77496000	46887000	30296	2624	28666	187808;187809;187810;187811;187812;187813;187814;187815;187816;187817	253823;253824;253825;253826;253827;253828;253829;253830;253831;253832;253833;253834;253835;253836;253837;253838;253839;253840	253826			18	
LFPLLATAYAFQFVGAYMK	1	Oxidation (M)	2166.1224	0.12237033	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	99.44	91.295	2;3	2.111E-25	51985	160513_QHF_FH_JSI9Kac_6	150.39	139.78			0.9254	0.9506	18.223	5	2	Median	0.9254	0.805	NaN	1	0	Median	0.90529	1.063	15.799	2	2	Median	0.80293	0.75849	NaN	1	0	Median	0.97814	1.0269	NaN	1	0	Median	1152000000	534950000	617020000	349120000	155130000	193990000	337940000	160260000	177680000	241380000	128200000	113180000	223540000	91371000	132170000	30297	2624	28666	187818;187819;187820;187821;187822;187823;187824;187825	253841;253842;253843;253844;253845;253846;253847;253848;253849	253844		2055	9	
LFPLNQQDVPDK	1	Unmodified	1412.73	0.72997974	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	58.146	57.4	2;3	0.00036758	50947	160511_QHF_FH_JSI9i_1	47.991	40.08			0.69108	0.68367	57.54	12	8	Median	0.93202	0.75553	61.551	3	2	Median	0.53065	0.61864	71.484	3	2	Median	0.43159	0.41803	66.071	3	2	Median	0.54823	0.59323	60.743	3	2	Plateau	1670500000	1159200000	511290000	327840000	220920000	106920000	418720000	284330000	134380000	586980000	429830000	157140000	336990000	224150000	112840000	30298	2518	28667	187826;187827;187828;187829;187830;187831;187832;187833;187834;187835;187836;187837	253850;253851;253852;253853;253854;253855;253856;253857;253858;253859;253860;253861	253855			12	
LFPLYVLALLK	1	Unmodified	1288.8159	0.81588162	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	100.3	93.529	2	1.6947E-11	51826	160513_QHF_FH_JSI11Kac_6	143.12	106.56			0.60715	0.70502	23.719	5	5	Median	1.0097	0.89658	NaN	1	1	Median	0.51851	0.62313	17.461	2	2	Median	1.0042	0.97434	NaN	1	1	Median	0.60715	0.6357	NaN	1	1	Median	10540000000	5731900000	4808500000	2638900000	1276900000	1362000000	2699900000	1659600000	1040400000	4305600000	2232300000	2073300000	896030000	563160000	332870000	30299	701	28668	187838;187839;187840;187841;187842	253862;253863;253864;253865;253866	253863			5	
LFPNADSK	1	Unmodified	890.44978	0.44978213	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0	By MS/MS		By matching		2	0		2								1		1		24.395	23.722	2	0.011665	20405	160511_QHF_FH_JSI9i_2	53.968	27.366			1.0978	1.0194	6.6392	2	0	Median	1.2464	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96693	0.97266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	311410000	151230000	160180000	114590000	44249000	70338000	0	0	0	196830000	106980000	89842000	0	0	0	30300	1309	28669	187843;187844	253867	253867			1	
LFPNMLPSTFETQSLK	1	Unmodified	1851.9441	0.94407161	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			5							1		2	2	94.624	94.429	2;3	1.2856E-10	84085	160511_QHF_FH_JSI11i_3	163.99	144.75			1.1838	1.3198	9.1152	5	1	Linear	1.5274	1.3198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4624	1.3508	0.89795	2	1	Median	1.1372	1.1537	7.615	2	0	Median	373370000	165330000	208040000	5698800	2498300	3200500	0	0	0	161830000	63590000	98241000	205840000	99243000	106600000	30301	655	28670	187845;187846;187847;187848;187849	253868;253869;253870;253871;253872;253873;253874;253875	253868			8	
LFPNSFNDK	1	Unmodified	1080.524	0.52400971	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	44.409	44.17	2	0.0029769	37687	160511_QHF_FH_JSI12i_3	63.673	39.041			1.3078	1.3441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3078	1.3441	NaN	1	0	Median	65327000	30251000	35076000	0	0	0	0	0	0	0	0	0	65327000	30251000	35076000	30302	5618	28671	187850;187851	253876;253877;253878	253877			3	
LFPNSLDQTDMHGDSEYNIMFGPDICGPGTK	1	Oxidation (M)	3471.5057	0.50574174	1297	P27797	CALR	Calreticulin	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2.75	0.433		1	3									1	3	91.597	91.375	3	8.2278E-13	79930	160511_QHF_FH_JSI12i_3	76.611	74.865			1.156	1.1179	39.575	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96311	0.89975	NaN	1	0	Median	1.3874	1.389	47.32	3	0	Median	213220000	100050000	113170000	0	0	0	0	0	0	49565000	25874000	23690000	163660000	74176000	89482000	30303	1297	28672	187852;187853;187854;187855	253879;253880;253881;253882;253883;253884;253885;253886	253886		938;939	8	
LFPNSLDQTDMHGDSEYNIMFGPDICGPGTK	1	Unmodified	3455.5108	0.51082712	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.653	2	8	5							2	3	6	4	96.284	96.126	3;4	1.9903E-51	83245	160511_QHF_FH_JSI12i_3	180.4	178.42			1.0167	1.0438	17.256	15	2	Median	1.42	1.1987	17.555	2	0	Median	0.73463	0.90976	4.9581	3	0	Median	0.976	0.93237	8.3034	6	2	Median	1.1934	1.2689	9.7269	4	0	Median	1673300000	741440000	931850000	93598000	40444000	53154000	186780000	96904000	89874000	641590000	321240000	320340000	751330000	282850000	468480000	30304	1297	28672	187856;187857;187858;187859;187860;187861;187862;187863;187864;187865;187866;187867;187868;187869;187870	253887;253888;253889;253890;253891;253892;253893;253894;253895;253896;253897;253898;253899;253900;253901;253902;253903;253904;253905;253906;253907;253908;253909;253910;253911;253912;253913;253914;253915;253916;253917	253916			31	
LFPNSLDQTDMHGDSEYNIMFGPDICGPGTKK	2	Unmodified	3583.6058	0.60579014	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	88.3	88.226	4	5.447E-07	76480	160511_QHF_FH_JSI12i_3	55.413	50.507			0.92954	0.85452	28.752	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92954	0.85452	NaN	1	0	Median	1.1469	1.2041	29.482	2	2	Median	107990000	56631000	51360000	0	0	0	0	0	0	71904000	39322000	32582000	36087000	17309000	18778000	30305	1297	28673	187871;187872;187873	253918;253919;253920	253919			3	
LFPPDDSPLPVSSR	0	Unmodified	1525.7777	0.77765821	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	66.778	66.01	2	0.00012786	59927	160511_QHF_FH_JSI10i_1	100.55	84.3			0.92059	0.8818	14.606	7	1	Median	1.0376	0.8553	10.991	2	0	Median	0.64923	0.78022	17.309	2	0	Median	0.88898	0.87591	19.286	2	1	Median	0.92059	1.0199	NaN	1	0	Median	606370000	320120000	286250000	141910000	73844000	68065000	153320000	87723000	65593000	233280000	118120000	115160000	77863000	40431000	37433000	30306	2230	28674	187874;187875;187876;187877;187878;187879;187880	253921;253922;253923;253924;253925;253926;253927;253928;253929;253930;253931;253932;253933;253934;253935;253936;253937;253938;253939;253940;253941;253942;253943	253929			23	
LFPPWIK	1	Unmodified	899.52691	0.52691024	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	2	3	78.111	77.218	2	0.01003	68722	160511_QHF_FH_JSI11i_3	76.592	11.726			0.76317	0.78828	25.444	10	2	Median	0.76321	0.63007	8.637	2	0	Median	0.65628	0.76802	4.541	3	0	Plateau	0.81617	0.79817	3.5389	2	0	Median	0.90913	0.9313	49.373	3	2	Median	1269900000	714680000	555260000	245640000	153290000	92355000	263540000	151560000	111980000	295850000	149160000	146690000	464910000	260670000	204240000	30307	3101	28675	187881;187882;187883;187884;187885;187886;187887;187888;187889;187890	253944;253945;253946;253947;253948;253949;253950;253951;253952;253953;253954;253955;253956;253957;253958;253959;253960;253961;253962;253963	253944			20	
LFPPWIKPADTEPPPLLVYK	2	Unmodified	2320.2871	0.28712747	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.3	101.22	3	1.7872E-11	83767	160511_QHF_FH_JSI10i_3	130	112.85			1.076	0.97691	14.393	4	2	Median	1.2328	1.0014	NaN	1	0	Median	0.72199	0.84592	NaN	1	1	Median	0.99031	0.95303	NaN	1	0	Median	1.1692	1.1963	NaN	1	1	Median	1578600000	746040000	832540000	78803000	36230000	42572000	263560000	141860000	121700000	634480000	308060000	326420000	601740000	259890000	341850000	30308	3101	28676	187891;187892;187893;187894	253964;253965;253966;253967;253968;253969	253966			6	
LFPQETLFLEAKE	1	Unmodified	1563.8185	0.81846039	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		9								1	2	2	4	88.358	87.674	2;3	1.7746E-09	75799	160511_QHF_FH_JSI12i_2	112.15	74.426			0.88594	0.98004	41.589	8	4	Median	1.558	1.3778	NaN	1	0	Median	0.54763	0.65806	6.3974	2	1	Median	0.84774	0.83542	31.174	2	1	Median	0.84267	0.92711	45.765	3	2	Plateau	190430000	112850000	77575000	5181200	2609700	2571600	46138000	32753000	13384000	75448000	43825000	31623000	63661000	33664000	29997000	30309	5442	28677	187895;187896;187897;187898;187899;187900;187901;187902;187903	253970;253971;253972;253973;253974;253975;253976	253973			7	
LFPQLEGK	1	Unmodified	930.51747	0.51746776	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	50.257	49.032	2	0.020102	42945	160511_QHF_FH_JSI9i_2	42.869	42.869			0.83537	0.82703	9.7385	2	0	Median	1.0215	0.88599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68317	0.772	NaN	1	0	Median	88441000	46231000	42210000	41749000	19642000	22107000	0	0	0	0	0	0	46692000	26589000	20104000	30310	3073	28678	187904;187905	253977	253977			1	
LFPSPGLPTR	0	Unmodified	1083.6077	0.60767975	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			58.262	56.722	2	0.033778	46442	160511_QHF_FH_JSI9i_3	39.022	12.42			1.3113	1.2656	7.1302	2	0	Median	1.6758	1.331	NaN	1	0	Median	1.0261	1.2034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57711000	21197000	36514000	30683000	10200000	20483000	27028000	10997000	16031000	0	0	0	0	0	0	30311	3452	28679	187906;187907	253978	253978			1	
LFPWGNK	1	Unmodified	860.45447	0.45447358	3595	Q8NBK3	SUMF1	Sulfatase-modifying factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	65.498	65.416	2	0.014827	48278	160511_QHF_FH_JSI12i_3	65.263	38.142			0.71553	0.73834	64.964	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75605	0.6987	91.762	2	1	Median	0.71553	0.73834	NaN	1	1	Median	158090000	84772000	73321000	0	0	0	0	0	0	45001000	26148000	18853000	113090000	58625000	54468000	30312	3595	28680	187908;187909;187910	253979;253980;253981	253981			3	
LFPYALAFMPPGYEEDMK	1	Unmodified	2117.9842	0.98422187	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		101.88	101.79	2;3	1.0545E-11	89701	160511_QHF_FH_JSI9i_2	115.14	95.298			0.68679	0.77318	21.012	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72359	0.89703	NaN	1	1	Median	0.65186	0.66643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	237950000	138120000	99829000	0	0	0	99246000	60470000	38776000	138710000	77652000	61053000	0	0	0	30313	4518	28681	187911;187912;187913	253982;253983;253984	253982			3	
LFPYIQK	1	Unmodified	907.51674	0.51673948	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		54.39	54.39	2	0.029706	48172	160511_QHF_FH_JSI11i_3	54.525	28.416			1.8293	1.7146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8293	1.7146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19708000	8928800	10780000	0	0	0	0	0	0	19708000	8928800	10780000	0	0	0	30314	4733	28682	187914	253985	253985			1	
LFPYSQYYR	0	Unmodified	1235.5975	0.597509	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8.57	6.43			4						3	2	2		3	62.221	57.193	2	0.007707	49255	160511_QHF_FH_JSI12i_3	53.968	17.411			1.3362	1.3069	27.967	6	1	Median	1.6807	1.4099	28.243	2	0	Median	1.0836	1.2728	21.258	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0966	1.1559	47.607	2	1	Median	251370000	123450000	127930000	64481000	25728000	38753000	82637000	45321000	37315000	0	0	0	104260000	52396000	51860000	30315	1669	28683	187915;187916;187917;187918;187919;187920;187921	253986;253987;253988;253989	253988			4	
LFQAEDSPVDGQGR	0	Unmodified	1517.711	0.71103521	612	O94829	IPO13	Importin-13	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	36.646	35.92	2	0.013971	31713	160511_QHF_FH_JSI9i_1	54.471	33.601			1.0046	1.0571	30.144	3	1	Median	0.88023	0.70501	NaN	1	1	Median	1.1265	1.2709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.0571	NaN	1	0	Median	97864000	57283000	40581000	26365000	15279000	11085000	33650000	19791000	13859000	0	0	0	37849000	22212000	15637000	30316	612	28684	187922;187923;187924	253990;253991	253991			2	
LFQCLLHR	0	Unmodified	1085.5804	0.58041915	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	2	1	2	50.469	42.689	2;3	0.00012268	23348	160513_QHF_FH_JSI10Kac_6	109.86	73.529			4.4636	4.5993	143.09	5	5	Median	4.4636	3.8866	NaN	1	1	Median	0.9056	1.0583	207.78	2	2	Median	6.6169	6.4653	NaN	1	1	Median	7.5343	8.3376	NaN	1	1	Median	139600000	66394000	73205000	9697200	1835000	7862200	114150000	62504000	51649000	5993400	505770	5487600	9755000	1549300	8205700	30317	1024	28685	187925;187926;187927;187928;187929;187930	253992;253993;253994;253995;253996;253997	253997			6	
LFQECCPHSTDR	0	Unmodified	1548.6449	0.64494625	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.87	6.33		6	4					1	4	4	2	6	3	19.16	16.517	2;3	6.0293E-11	13849	160511_QHF_FH_JSI11i_3	149.23	140.7			1.1362	1.0789	22.71	14	1	Median	1.231	1.0617	23.6	4	1	Median	1.3048	1.6083	24.49	2	0	Median	1.1234	1.0253	13.318	5	0	Median	1.02	1.0566	14.327	3	0	Median	1636700000	861730000	775020000	124710000	67727000	56984000	200330000	106790000	93544000	763330000	389380000	373960000	548370000	297840000	250530000	30318	1975	28686	187931;187932;187933;187934;187935;187936;187937;187938;187939;187940;187941;187942;187943;187944;187945	253998;253999;254000;254001;254002;254003;254004;254005;254006;254007;254008;254009;254010;254011;254012;254013;254014	253998			16	
LFQEDDEIPLYLK	1	Unmodified	1621.8239	0.8239397	1053	P14406	COX7A2	Cytochrome c oxidase subunit 7A2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	85.14	84.561	2	1.7142E-30	77185	160511_QHF_FH_JSI11i_1	185.77	145.42			0.9457	0.90509	11.177	8	0	Median	1.0222	0.85858	8.1155	2	0	Median	0.71146	0.86146	2.9233	2	0	Median	0.93769	0.9279	4.1742	2	0	Median	0.9898	1.0735	11.281	2	0	Median	2165500000	1103600000	1061900000	394350000	171100000	223250000	551820000	314170000	237660000	635310000	315250000	320060000	584010000	303060000	280950000	30319	1053	28687	187946;187947;187948;187949;187950;187951;187952;187953;187954	254015;254016;254017;254018;254019;254020;254021;254022;254023;254024;254025;254026;254027;254028;254029;254030;254031;254032;254033;254034;254035;254036;254037;254038	254016			24	
LFQEDPEAFLLYHR	0	Unmodified	1776.8835	0.88352026	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.097	82.352	3	6.2588E-12	72534	160511_QHF_FH_JSI11i_2	146.47	121.92			1.3876	1.4387	4.0614	4	0	Median	1.6559	1.4307	NaN	1	0	Median	1.1881	1.4468	NaN	1	0	Median	1.3877	1.3839	NaN	1	0	Median	1.3875	1.5261	NaN	1	0	Median	268450000	110050000	158400000	45284000	19423000	25861000	76130000	40671000	35459000	86908000	28587000	58321000	60124000	21366000	38758000	30320	305	28688	187955;187956;187957;187958	254039;254040;254041;254042;254043	254042			5	
LFQENSVLSSLPLNSLSR	0	Unmodified	2003.0688	0.068754852	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	4	3	2	98.409	98.314	2;3	1.2596E-22	87535	160511_QHF_FH_JSI11i_3	202.89	176.22			0.82599	0.98183	9.8704	9	1	Median	1.2815	1.0878	NaN	1	0	Median	0.77486	0.96511	4.4915	4	1	Median	1.1248	1.0512	4.8184	2	0	Median	0.8169	0.83778	1.1637	2	0	Median	215240000	106970000	108270000	29669000	10629000	19039000	66688000	35351000	31337000	52525000	24242000	28283000	66354000	36742000	29612000	30321	564	28689	187959;187960;187961;187962;187963;187964;187965;187966;187967;187968;187969	254044;254045;254046;254047;254048;254049;254050;254051;254052;254053;254054;254055;254056	254045			13	
LFQFLQAEPHNSLGK	1	Unmodified	1727.8995	0.89950468	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	0.361		2	11							3	3	3	4	66.17	65.487	2;3	2.5384E-15	54896	160511_QHF_FH_JSI10i_3	160.65	150.22			1.2077	1.1597	66.052	12	10	Median	1.6088	1.3464	35.46	3	2	Median	1.2913	1.4974	33.608	3	2	Median	0.63435	0.59856	79.076	3	3	Median	0.5262	0.54371	96.559	3	3	Median	2816400000	1442400000	1374000000	329530000	131210000	198310000	491410000	219680000	271720000	1094700000	587660000	507050000	900780000	503860000	396930000	30322	3100	28690	187970;187971;187972;187973;187974;187975;187976;187977;187978;187979;187980;187981;187982	254057;254058;254059;254060;254061;254062;254063;254064;254065;254066;254067;254068;254069;254070;254071;254072;254073	254061			17	
LFQGVNK	1	Unmodified	804.44939	0.4493882	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	19.451	18.862	2	0.017404	16196	160511_QHF_FH_JSI10i_2	62.715	19.649			2.2486	2.1166	53.44	6	6	Median	2.341	2.0246	NaN	1	1	Median	1.1534	1.3844	108.47	2	2	Median	2.353	2.2129	NaN	1	1	Median	2.0122	2.0675	14.007	2	2	Median	390330000	177140000	213190000	45321000	15522000	29799000	86918000	49770000	37148000	76595000	25965000	50631000	181500000	85884000	95613000	30323	3172	28691	187983;187984;187985;187986;187987;187988	254074;254075;254076;254077;254078;254079	254078			6	
LFQHIADYLPSYAR	0	Unmodified	1692.8624	0.86239089	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		73.875	73.147	3	0.00057278	65173	160511_QHF_FH_JSI11i_3	55.885	46.598			1.0755	0.93844	69.1	2	2	Median	1.8639	1.5297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62055	0.57571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36584000	15943000	20640000	20854000	6127800	14726000	0	0	0	15729000	9815500	5913800	0	0	0	30324	228	28692	187989;187990	254080;254081	254080			2	
LFQHIADYLPSYARPR	0	Unmodified	1946.0163	0.016265772	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			74.441	67.237	3;4	4.5803E-05	36773	160513_QHF_FH_JSI10Kac_6	77.562	54.424			0.88003	1.0582	9.0028	3	0	Plateau	1.0616	0.92767	NaN	1	0	Median	0.91447	1.0799	2.8681	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	231050000	118080000	112970000	35829000	19113000	16716000	195220000	98968000	96250000	0	0	0	0	0	0	30325	228	28693	187991;187992;187993	254082;254083;254084;254085;254086	254084			4	
LFQHPSMAIIK	1	Unmodified	1283.706	0.70601359	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			52.735	51.164	2;3	0.0032523	42719	160511_QHF_FH_JSI10i_3	51.841	39.975			1.9719	2.3145	49.981	3	3	Plateau	2.1212	1.722	NaN	1	1	Median	2.8097	3.2503	48.02	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	427350000	130420000	296930000	183910000	52865000	131050000	243440000	77554000	165890000	0	0	0	0	0	0	30326	486	28694	187994;187995;187996	254087;254088;254089	254088			3	
LFQLMVEHTPDEESIDWTK	1	Oxidation (M)	2333.0886	0.088563596	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	77.923	77.79	3	3.8074E-05	67461	160511_QHF_FH_JSI12i_3	68.134	60.512			0.916	0.86147	6.714	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90749	0.82152	NaN	1	0	Median	0.9246	0.90335	NaN	1	0	Median	180500000	70873000	109630000	0	0	0	0	0	0	52126000	23671000	28455000	128380000	47201000	81175000	30327	2326	28695	187997;187998	254090;254091;254092	254092		1918	3	
LFQLMVEHTPDEESIDWTK	1	Unmodified	2317.0936	0.093648974	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	1	4	85.439	85.147	2;3	6.9399E-68	75934	160511_QHF_FH_JSI11i_3	232.84	219.21			0.93523	0.85841	37.671	5	2	Median	1.4759	1.2929	NaN	1	0	Median	0.58309	0.71635	NaN	1	1	Median	0.93523	0.85841	NaN	1	0	Median	0.68927	0.70699	54.491	2	1	Median	1286400000	658190000	628160000	104000000	38056000	65943000	134810000	82561000	52246000	349390000	165540000	183850000	698160000	372030000	326130000	30328	2326	28695	187999;188000;188001;188002;188003;188004;188005	254093;254094;254095;254096;254097;254098;254099;254100;254101;254102;254103	254093			11	
LFQLPTPPLSR	0	Unmodified	1267.7289	0.72885752	5733	Q9Y6K0	CEPT1	Choline/ethanolaminephosphotransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		80.641	79.833	2	1.7057E-05	66830	160511_QHF_FH_JSI10i_3	130.75	90.645			1.1782	1.0906	13.111	5	4	Plateau	1.6364	1.3799	13.362	2	2	Median	0.98307	1.2036	9.9541	2	2	Median	1.1782	1.0906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	370320000	159430000	210890000	144520000	51769000	92749000	157070000	71679000	85387000	68738000	35985000	32754000	0	0	0	30329	5733	28696	188006;188007;188008;188009;188010;188011	254104;254105;254106;254107;254108;254109	254105			5	
LFQLQTLGLK	1	Unmodified	1159.6965	0.69649476	4167	Q96LI5;Q9ULM6	CNOT6L;CNOT6	CCR4-NOT transcription complex subunit 6-like;CCR4-NOT transcription complex subunit 6	yes	no	0	0	0	0	By MS/MS				3	0			1							1				79.914	78.545	2	0.003101	64615	160511_QHF_FH_JSI9i_3	56.916	40.772			2.124	1.7509	NaN	1	0	Median	2.124	1.7509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28684000	8990800	19693000	28684000	8990800	19693000	0	0	0	0	0	0	0	0	0	30330	4167	28697	188012	254110	254110			1	
LFQLYPR	0	Unmodified	935.52289	0.52288749	3445	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		2	4						2	2	3	1	2	56.955	54.011	2	0.0082998	46199	160511_QHF_FH_JSI12i_3	84.064	58.17			0.89061	0.92902	15.97	8	0	Median	1.1646	0.97426	13.826	2	0	Median	0.87813	1.0316	8.9573	3	0	Median	1.0031	0.95748	NaN	1	0	Median	0.70599	0.73771	13.496	2	0	Median	946720000	513660000	433060000	249620000	127700000	121920000	258620000	148670000	109950000	186780000	102130000	84649000	251700000	135150000	116550000	30331	3445	28698	188013;188014;188015;188016;188017;188018;188019;188020	254111;254112;254113;254114;254115;254116;254117;254118	254116			8	
LFQNWLDQDAVTAR	0	Unmodified	1675.8318	0.83181904	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	74.563	74.133	2	3.5126E-06	62140	160511_QHF_FH_JSI10i_3	124.1	88.592			0.82958	0.85946	21.305	4	4	Median	NaN	NaN	NaN	0	0	Median	0.72466	0.84117	NaN	1	1	Median	0.80943	0.75917	20.59	2	2	Median	1.0797	1.1038	NaN	1	1	Median	251160000	135540000	115620000	0	0	0	10651000	5353900	5296800	171050000	98184000	72863000	69466000	32003000	37463000	30332	2654	28699	188021;188022;188023;188024	254119;254120;254121;254122	254121			4	
LFQPFGK	1	Unmodified	835.45922	0.4592246	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.06	47.205	2	0.012406	39513	160511_QHF_FH_JSI10i_3	69.432	43.323			0.95925	0.98052	6.0654	4	0	Median	1.2759	1.0297	NaN	1	0	Median	0.79901	0.97195	NaN	1	0	Median	1.0624	0.98918	NaN	1	0	Median	0.86609	0.89168	NaN	1	0	Median	462200000	243590000	218610000	84258000	34869000	49389000	81298000	44397000	36901000	111110000	53389000	57724000	185530000	110930000	74598000	30333	2584	28700	188025;188026;188027;188028	254123;254124;254125;254126	254125			4	
LFQQIYSDGSDEVK	1	Unmodified	1627.773	0.77296676	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	51.701	50.883	2	8.8368E-15	45773	160511_QHF_FH_JSI10i_1	161.99	128.1			0.73742	0.84365	32.948	7	4	Median	1.0168	0.84365	39.618	3	2	Median	0.56689	0.67861	33.259	2	1	Median	1.2214	1.1836	NaN	1	0	Median	0.65807	0.70001	NaN	1	1	Median	1565300000	728300000	836960000	361280000	180460000	180820000	410250000	183580000	226660000	369930000	146220000	223710000	423810000	218040000	205770000	30334	5548	28701	188029;188030;188031;188032;188033;188034;188035;188036;188037	254127;254128;254129;254130;254131;254132;254133;254134;254135;254136;254137;254138	254131			12	
LFQSDTNAMLGKK	2	Acetyl (K)	1493.7548	0.75481428	710	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		63.384	52.5	2	0.017956	28664	160513_QHF_FH_JSI10Kac_4	69.979	43.381			0.80484	0.88094	13.827	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65813	0.79888	NaN	1	0	Median	0.98426	0.97142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7895600	3939200	3956300	0	0	0	4625300	2268200	2357100	3270200	1671000	1599200	0	0	0	30335	710	28702	188038;188039	254139;254140	254139	350		2	
LFQSNDPTLR	0	Unmodified	1189.6091	0.60913632	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.357	33.946	2	0.0051791	28919	160511_QHF_FH_JSI11i_2	56.432	22.259			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30336	5708	28703	188040	254141	254141			1	
LFQSNDPTLRR	0	Unmodified	1345.7102	0.71024735	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			26.313	24.989	2	0.0086045	20302	160511_QHF_FH_JSI9i_3	49.715	33.175			0.94151	0.89707	6.5403	2	0	Median	1.0453	0.85653	NaN	1	0	Median	0.84804	0.93953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49614000	22141000	27473000	28991000	13185000	15806000	20623000	8955300	11668000	0	0	0	0	0	0	30337	5708	28704	188041;188042	254142	254142			1	
LFQTAITR	0	Unmodified	948.53927	0.53926584	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	35.703	34.947	2	0.014067	29680	160511_QHF_FH_JSI12i_3	51.736	21.067			0.80554	0.87539	14.201	4	0	Median	1.2839	1.0253	NaN	1	0	Median	0.78134	0.91051	NaN	1	0	Median	0.77837	0.7309	NaN	1	0	Median	0.83049	0.84163	NaN	1	0	Median	644100000	347780000	296320000	156670000	71556000	85109000	184570000	106350000	78217000	133490000	74361000	59134000	169370000	95519000	73856000	30338	5566	28705	188043;188044;188045;188046	254143;254144	254144			2	
LFQVEYAIEAIK	1	Unmodified	1422.7759	0.7758673	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.51		12	4						4	4	6	5	5	89.654	87.488	2;3	9.5836E-31	43994	160513_QHF_FH_JSI10Kac_6	177.76	128.96			0.91878	0.91698	42.796	19	11	Median	1.0575	0.87977	49.438	4	2	Median	0.71112	0.87397	39.989	6	4	Median	0.94964	0.90204	59.59	5	3	Median	0.95533	0.99705	31.254	4	2	Median	5637800000	2869600000	2768200000	921260000	402800000	518460000	1800900000	1013600000	787330000	1363100000	760450000	602630000	1552600000	692770000	859790000	30339	1300	28706	188047;188048;188049;188050;188051;188052;188053;188054;188055;188056;188057;188058;188059;188060;188061;188062;188063;188064;188065;188066	254145;254146;254147;254148;254149;254150;254151;254152;254153;254154;254155;254156;254157;254158;254159;254160;254161;254162;254163;254164;254165;254166;254167;254168;254169;254170;254171	254171			27	
LFQVHTFEIFQK	1	Unmodified	1535.8136	0.81364979	3152	Q6UWJ1	TMCO3	Transmembrane and coiled-coil domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.825	71.541	3	4.7241E-13	38432	160513_QHF_FH_JSI9Kac_6	127.37	116.32			0.94198	0.86362	15.095	4	0	Median	0.98217	0.85345	NaN	1	0	Median	0.7269	0.87391	NaN	1	0	Median	0.90344	0.83541	NaN	1	0	Median	1.0721	1.1525	NaN	1	0	Median	298740000	167040000	131700000	67156000	27429000	39727000	150010000	93670000	56336000	54704000	29241000	25463000	26871000	16695000	10176000	30340	3152	28707	188067;188068;188069;188070	254172;254173;254174;254175;254176	254173			5	
LFQVLAPR	0	Unmodified	942.56509	0.56508666	4969	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	53.373	52.699	2	0.00036711	44110	160511_QHF_FH_JSI10i_3	110.61	50.971			0.81147	0.90687	64.196	5	3	Median	1.1314	0.90687	NaN	1	0	Median	0.81147	0.92166	NaN	1	0	Median	1.1622	1.0902	116.31	2	2	Median	0.5431	0.56177	NaN	1	1	Median	725370000	342780000	382590000	216900000	83053000	133850000	164470000	83368000	81107000	210220000	101770000	108450000	133780000	74592000	59186000	30341	4969	28708	188071;188072;188073;188074;188075	254177;254178;254179;254180;254181;254182;254183	254180			7	
LFQYASTDMDK	1	Unmodified	1317.5911	0.59110299	2183	Q02078;Q06413	MEF2A;MEF2C	Myocyte-specific enhancer factor 2A;Myocyte-specific enhancer factor 2C	no	no	0	0	0	0	By MS/MS				1	0	1									1				44.18	42.963	2	0.0020222	38370	160511_QHF_FH_JSI9i_1	73.985	59.982			12.047	10.294	NaN	1	1	Median	12.047	10.294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31914000	3700200	28214000	31914000	3700200	28214000	0	0	0	0	0	0	0	0	0	30342	2183	28709	188076	254184	254184			1	
LFRPAAFLPFMAPTVFLSMTPLK	1	Unmodified	2594.4157	0.41571558	3104	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	99.78	92.198	3;4	4.0235E-17	55092	160513_QHF_FH_JSI10Kac_6	121.26	109.64			0.61288	0.6851	39.55	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76696	0.90616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48974	0.51796	NaN	1	1	Median	503500000	286180000	217330000	0	0	0	223960000	119200000	104760000	0	0	0	279550000	166980000	112570000	30343	3104	28710	188077;188078	254185;254186;254187	254187			3	
LFSADPFDLEAQAK	1	Unmodified	1550.7617	0.76167379	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	1	3	2	82.833	82.285	2	0.0016613	72439	160511_QHF_FH_JSI9i_2	61.344	46.078			1.0392	0.99522	28.959	7	5	Median	1.1806	0.99919	23.427	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4797	1.4488	26.911	3	3	Plateau	1.166	1.1886	52.247	2	2	Median	193060000	85855000	107200000	33985000	15754000	18231000	0	0	0	103830000	45897000	57933000	55244000	24204000	31039000	30344	2968	28711	188079;188080;188081;188082;188083;188084;188085;188086	254188;254189;254190;254191;254192;254193;254194;254195	254192			8	
LFSASEFEDPLVGEDTER	0	Unmodified	2039.9324	0.93238053	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	84.213	83.687	2;3	6.5628E-14	76375	160511_QHF_FH_JSI12i_1	189.3	175.14			1.2227	1.2539	31.907	7	5	Median	NaN	NaN	NaN	0	0	Median	1.4304	1.7057	18.859	2	1	Median	0.92772	0.90343	19.519	3	3	Median	0.9598	1.0216	32.429	2	1	Median	230050000	104310000	125750000	0	0	0	83959000	30944000	53015000	87565000	41679000	45886000	58530000	31684000	26847000	30345	1469	28712	188087;188088;188089;188090;188091;188092;188093;188094	254196;254197;254198;254199;254200;254201;254202;254203;254204	254199			9	
LFSDEAANIYER	0	Unmodified	1426.6729	0.67285879	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	1		2	52.928	51.743	2	6.0114E-05	44319	160511_QHF_FH_JSI12i_2	107.83	99.611			1.4116	1.5162	20.783	4	4	Median	1.9442	1.6422	NaN	1	1	Median	1.5814	1.9435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.163	1.2953	10.972	2	2	Median	356700000	149520000	207180000	90665000	37287000	53378000	89484000	38636000	50849000	0	0	0	176550000	73598000	102950000	30346	2338	28713	188095;188096;188097;188098	254205;254206;254207;254208	254206			4	
LFSEGLFSAK	1	Unmodified	1097.5757	0.57571092	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	64.601	64.016	2	0.0021201	56671	160511_QHF_FH_JSI11i_3	61.78	36.885			0.55569	0.92392	34.118	3	0	Plateau	0.55569	0.46765	NaN	1	0	Median	0.51193	0.63242	NaN	1	0	Median	0.97923	0.92392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205950000	124140000	81803000	40497000	26582000	13915000	59343000	35742000	23601000	106110000	61820000	44287000	0	0	0	30347	2591	28714	188099;188100;188101;188102	254209;254210;254211;254212;254213	254209			5	
LFSELPLAK	1	Unmodified	1016.5906	0.59063271	5503	Q9Y291	MRPS33	28S ribosomal protein S33, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.43	64.529	2	0.00030202	56757	160511_QHF_FH_JSI9i_2	83.265	64.534			1.0536	1.0396	12.93	4	0	Median	1.2575	1.0618	NaN	1	0	Median	0.71018	0.85608	NaN	1	0	Median	1.0481	1.0178	NaN	1	0	Median	1.0591	1.1658	NaN	1	0	Median	361980000	174580000	187410000	64881000	34081000	30800000	73745000	39532000	34213000	148300000	62732000	85566000	75059000	38231000	36828000	30348	5503	28715	188103;188104;188105;188106	254214;254215;254216;254217	254215			4	
LFSEVENK	1	Unmodified	964.48656	0.48656157	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	1	4	3	25.327	24.625	2	0.0031292	20995	160511_QHF_FH_JSI9i_2	81.296	14.264			0.87059	0.85366	94.328	10	10	Median	0.92583	0.8141	85.661	2	2	Median	0.39987	0.48846	NaN	1	1	Median	2.0573	2.0413	116.85	4	4	Median	0.33906	0.37794	94.287	3	3	Plateau	1528800000	802160000	726650000	259570000	141280000	118290000	128130000	77966000	50161000	734580000	325500000	409080000	406530000	257420000	149110000	30349	1060	28716	188107;188108;188109;188110;188111;188112;188113;188114;188115;188116	254218;254219;254220;254221;254222;254223;254224;254225;254226;254227	254223			10	
LFSEYHEK	1	Unmodified	1051.4975	0.4974606	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	20.49	15.964	3	0.012347	13087	160511_QHF_FH_JSI12i_3	35.152	27.424			1.2804	1.2741	52.684	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8765	0.87787	NaN	1	1	Median	1.8706	1.8493	NaN	1	0	Median	130520000	39221000	91297000	0	0	0	0	0	0	4339200	2337900	2001300	126180000	36883000	89296000	30350	4529	28717	188117;188118	254228;254229	254229			2	
LFSEYHEKR	1	Acetyl (K)	1249.6091	0.60913632	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.874	22.592	3	0.014345	12877	160513_QHF_FH_JSI11Kac_6	72.006	62.573			0.38233	0.37376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38233	0.37376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6173100	4402600	1770500	0	0	0	0	0	0	6173100	4402600	1770500	0	0	0	30351	4529	28718	188119	254230	254230	3181		1	
LFSFPAAK	1	Unmodified	879.48544	0.48543935	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	55.079	54.293	2	0.015282	46379	160511_QHF_FH_JSI12i_3	56.011	41.598			1.2807	1.2917	16.415	4	0	Median	1.7814	1.533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.391	1.3719	NaN	1	0	Median	1.0517	1.1277	10.676	2	0	Median	437840000	192590000	245240000	38369000	15513000	22856000	0	0	0	48299000	23296000	25003000	351170000	153780000	197390000	30352	2787	28719	188120;188121;188122;188123	254231;254232	254232			2	
LFSFYDYASK	1	Unmodified	1239.5812	0.58119023	2602	Q15018	FAM175B	BRISC complex subunit Abro1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		70.819	69.991	2	0.0005407	61268	160511_QHF_FH_JSI11i_2	82.749	65.519			1.9465	1.9801	88.75	2	2	Median	4.4273	3.7089	NaN	1	1	Median	0.8558	1.0572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109750000	35768000	73986000	62248000	12238000	50009000	47506000	23530000	23976000	0	0	0	0	0	0	30353	2602	28720	188124;188125;188126;188127	254233;254234;254235;254236	254234			4	
LFSGATMASSR	0	Unmodified	1126.5441	0.54409322	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			30.971	29.588	2	0.00017519	24589	160511_QHF_FH_JSI10i_3	82.287	70.24			1.2774	1.2264	17.496	2	0	Median	1.3533	1.0837	NaN	1	0	Median	1.2058	1.388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	376710000	156940000	219770000	198580000	78609000	119970000	178130000	78328000	99806000	0	0	0	0	0	0	30354	5262	28721	188128;188129	254237;254238	254237			2	
LFSGDVVLTAR	0	Unmodified	1176.6503	0.65027285	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	59.229	58.698	2	5.4889E-05	50628	160511_QHF_FH_JSI12i_3	94.692	55.544			0.58586	0.64841	40.387	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2682	1.2022	NaN	1	0	Median	0.88886	0.94805	53.724	2	0	Median	1125200000	647840000	477340000	0	0	0	0	0	0	286540000	145240000	141310000	838630000	502600000	336030000	30355	1092	28722	188130;188131;188132	254239;254240;254241;254242	254242			4	
LFSGLSVSSEGPSQR	0	Unmodified	1549.7736	0.77363546	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			52.512	50.95	2	0.00032857	42550	160511_QHF_FH_JSI10i_3	78.653	63.962			0.83886	0.98616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83886	0.98616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15120000	8175400	6944300	0	0	0	15120000	8175400	6944300	0	0	0	0	0	0	30356	2667	28723	188133;188134	254243;254244	254243			2	
LFSGPNAANNK	1	Unmodified	1131.5673	0.5672715	4243	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	19.551	19.565	2	5.7196E-05	15839	160511_QHF_FH_JSI12i_3	94.309	77.07			1.1212	1.1326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1212	1.1326	NaN	1	0	Median	149770000	68334000	81440000	0	0	0	0	0	0	0	0	0	149770000	68334000	81440000	30357	4243	28724	188135;188136	254245;254246;254247	254247			3	
LFSHEGSSFQMFSSEAYGQK	1	Unmodified	2266.0001	8.29396E-05	908	P08582	MFI2	Melanotransferrin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		64.941	64.941	3	6.1898E-05	57787	160511_QHF_FH_JSI11i_3	65.423	55.892			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16624000	0	16624000	0	0	0	0	0	0	16624000	0	16624000	0	0	0	30358	908	28725	188137	254248	254248			1	
LFSILSTVLLR	0	Unmodified	1260.7806	0.78055874	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	95.031	86.727	2	4.9165E-14	50892	160513_QHF_FH_JSI10Kac_6	158.76	129.28			0.29575	0.28236	180.02	7	7	Median	0.17159	0.14896	NaN	1	1	Median	0.58611	0.69378	196.04	2	2	Median	0.89232	0.85473	156.64	2	2	Median	0.88674	0.93903	324.77	2	2	Median	2563500000	1499200000	1064300000	249240000	182360000	66879000	1594000000	931990000	661990000	527060000	293980000	233080000	193180000	90846000	102330000	30359	3382	28726	188138;188139;188140;188141;188142;188143;188144	254249;254250;254251;254252;254253;254254;254255	254255			7	
LFSKSIETLR	1	Acetyl (K)	1234.6921	0.69213767	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.507	59.994	2	0.0010231	32487	160513_QHF_FH_JSI11Kac_6	88.948	46.35			0.14198	0.13929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14198	0.13929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44339000	39192000	5146500	0	0	0	0	0	0	44339000	39192000	5146500	0	0	0	30360	5254	28727	188145	254256	254256	3347		1	
LFSLELVDESGEIR	0	Unmodified	1605.825	0.82500233	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.082	88.475	2	9.9178E-10	76398	160511_QHF_FH_JSI12i_2	146.16	111.63			0.81304	0.80606	8.3657	4	0	Median	0.91068	0.77245	NaN	1	0	Median	0.64196	0.79615	NaN	1	0	Median	0.9181	0.93367	NaN	1	0	Median	0.72586	0.8161	NaN	1	0	Median	250340000	142130000	108210000	51290000	27094000	24196000	40238000	26716000	13522000	89681000	45892000	43789000	69130000	42426000	26704000	30361	1293	28728	188146;188147;188148;188149	254257;254258;254259;254260;254261;254262;254263	254258			7	
LFSLKQQK	2	Acetyl (K)	1032.5968	0.59678072	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	1	2	1	51.803	42.042	2	0.00046005	22334	160513_QHF_FH_JSI9Kac_6	116.25	61.701			0.875	0.97764	16.71	6	0	Median	1.2732	1.0692	1.9899	2	0	Median	0.88024	1.037	NaN	1	0	Median	0.80681	0.7662	11.527	2	0	Median	0.8698	0.92165	NaN	1	0	Median	194170000	104740000	89425000	41735000	22856000	18878000	48005000	26759000	21246000	73264000	37706000	35558000	31165000	17423000	13743000	30362	1935	28729	188150;188151;188152;188153;188154;188155	254264;254265;254266;254267;254268;254269;254270	254267	1942		7	
LFSLQDLLLLVR	0	Unmodified	1428.8704	0.87043638	3014	Q659A1	ICE2	Little elongation complex subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.34	103.34	2	0.0030534	90084	160511_QHF_FH_JSI12i_3	67.726	40.397			1.2948	1.3269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2948	1.3269	NaN	1	1	Median	15544000	6139100	9404700	0	0	0	0	0	0	0	0	0	15544000	6139100	9404700	30363	3014	28730	188156	254271	254271			1	
LFSLSNPSLSTTNLSGPSR	0	Unmodified	1977.0167	0.016719282	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				76.031	74.592	2	0.00028651	61364	160511_QHF_FH_JSI9i_3	82.362	69.801			1.4145	1.1818	NaN	1	1	Median	1.4145	1.1818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12586000	4449500	8136900	12586000	4449500	8136900	0	0	0	0	0	0	0	0	0	30364	3144	28731	188157	254272	254272			1	
LFSQDHLVIYK	1	Unmodified	1361.7343	0.73433683	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		5	2						4	3	1	3	4	56.488	53.077	2;3	4.1329E-10	28036	160513_QHF_FH_JSI9Kac_6	109.24	86.319			1.0468	1.0373	15.905	10	1	Median	1.0788	0.935	1.9725	2	0	Median	0.71538	0.89069	NaN	1	0	Median	1.0922	1.0497	13.294	3	1	Plateau	1.027	1.1162	16.524	4	0	Median	887070000	447710000	439350000	112700000	51625000	61074000	169140000	106960000	62178000	325760000	152560000	173200000	279470000	136570000	142900000	30365	4494	28732	188158;188159;188160;188161;188162;188163;188164;188165;188166;188167;188168	254273;254274;254275;254276;254277;254278;254279;254280;254281;254282;254283;254284;254285;254286;254287;254288;254289;254290	254285			18	
LFSQETVMK	1	Unmodified	1081.5478	0.54778161	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	39.096	38.139	2	0.00034516	33476	160511_QHF_FH_JSI10i_2	82.452	42.184			0.99006	1.1263	9.1538	4	1	Median	1.4454	1.2701	NaN	1	0	Median	0.96228	1.17	NaN	1	0	Median	1.0186	1.0297	NaN	1	0	Median	0.93979	1.0843	NaN	1	1	Median	550380000	284860000	265530000	103320000	56796000	46522000	139860000	82010000	57851000	172890000	85261000	87632000	134310000	60791000	73520000	30366	4877	28733	188169;188170;188171;188172;188173	254291;254292;254293;254294;254295;254296	254295			6	
LFSQFCNK	1	Unmodified	1042.4906	0.49060109	3044	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.729	34.601	2	0.0023873	29326	160511_QHF_FH_JSI12i_3	88.942	54.135			2.4184	2.5042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4184	2.5042	NaN	1	1	Median	49634000	10742000	38892000	0	0	0	0	0	0	0	0	0	49634000	10742000	38892000	30367	3044	28734	188174	254297	254297			1	
LFSQGIGGEQAQAK	1	Unmodified	1432.731	0.73104237	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	34.594	33.257	2	4.0951E-05	28391	160511_QHF_FH_JSI11i_2	78.653	53.267			2.3222	2.4652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3222	2.4652	NaN	1	1	Median	13022000	3475400	9547000	0	0	0	0	0	0	0	0	0	13022000	3475400	9547000	30368	4808	28735	188175;188176;188177;188178	254298;254299;254300;254301	254301			4	
LFSQNTVHWLQE	0	Unmodified	1500.7361	0.73612775	2593	Q14CZ7	FASTKD3	FAST kinase domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.182	69.033	2	0.00061378	61497	160511_QHF_FH_JSI11i_3	82.417	66.41			1.0653	1.0422	17.303	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98118	0.92215	NaN	1	1	Median	1.1567	1.1778	NaN	1	0	Median	97072000	41639000	55433000	0	0	0	0	0	0	46136000	20869000	25267000	50935000	20770000	30165000	30369	2593	28736	188179;188180	254302;254303	254302			1	
LFSSEQQASILHVLNTASTK	1	Unmodified	2173.1379	0.13789705	4210	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	80.611	80.053	3	3.3858E-25	71484	160511_QHF_FH_JSI11i_3	169.98	139.02			1.0245	1.0202	5.4319	4	1	Median	1.311	1.1227	NaN	1	1	Median	0.89688	1.0257	NaN	1	0	Median	1.0559	0.99216	NaN	1	0	Median	0.994	1.0147	NaN	1	0	Median	461600000	229360000	232240000	20655000	9702100	10953000	48940000	25054000	23886000	142660000	71225000	71440000	249340000	123380000	125960000	30370	4210	28737	188181;188182;188183;188184	254304;254305;254306;254307;254308;254309;254310	254305			7	
LFSSIVTVAEQK	1	Unmodified	1320.7289	0.7289171	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.972	64.681	2	1.7122E-05	55841	160511_QHF_FH_JSI12i_3	129.16	107.07			0.74646	0.79125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74646	0.79125	NaN	1	1	Median	74486000	39994000	34492000	0	0	0	0	0	0	0	0	0	74486000	39994000	34492000	30371	5100	28738	188185	254311	254311			1	
LFSSQYGK	1	Unmodified	928.46543	0.46543219	1685;31	P49792;A6NKT7	RANBP2;RGPD3	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	23.256	22.679	2	0.0049824	18686	160511_QHF_FH_JSI12i_3	67.032	35.743			0.92839	1.0381	17.998	6	0	Median	1.1307	0.997	NaN	1	0	Median	0.87807	1.0809	NaN	1	0	Median	1.0569	1.0214	36.031	2	0	Median	0.91871	0.97764	15.817	2	0	Median	678640000	340620000	338020000	100630000	44739000	55888000	82426000	47751000	34676000	224500000	107350000	117160000	271080000	140780000	130300000	30372	1685;31	28739	188186;188187;188188;188189;188190;188191	254312;254313;254314;254315;254316;254317;254318;254319	254319			8	
LFSSSSNTTK	1	Unmodified	1070.5244	0.52440364	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							1	1	3	2	11.648	11.328	2	9.2479E-06	8569	160511_QHF_FH_JSI12i_3	107.15	60.728			1.0596	0.95658	30.89	6	2	Median	1.0734	0.89304	NaN	1	0	Median	0.69231	0.82532	NaN	1	0	Median	1.1046	1.0246	29.705	3	1	Plateau	0.64413	0.6976	NaN	1	1	Median	402510000	189360000	213150000	68598000	33034000	35564000	82480000	49950000	32529000	220150000	88183000	131960000	31284000	18195000	13089000	30373	404	28740	188192;188193;188194;188195;188196;188197;188198	254320;254321;254322;254323;254324;254325;254326	254326			7	
LFSSVTFETVEESK	1	Unmodified	1601.7825	0.78246882	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.685	68.388	2	3.3144E-05	59186	160511_QHF_FH_JSI12i_3	140.24	123.99			0.47704	0.48407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47704	0.48407	NaN	1	1	Median	101710000	63538000	38171000	0	0	0	0	0	0	0	0	0	101710000	63538000	38171000	30374	4831	28741	188199	254327	254327			1	
LFSVIFK	1	Unmodified	852.51093	0.51092582	5029	Q9NVE7	PANK4	Pantothenate kinase 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.146	70.67	2	0.035052	58105	160511_QHF_FH_JSI9i_3	50.966	25.967			4.432	3.6685	NaN	1	1	Median	4.432	3.6685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33121000	10342000	22778000	33121000	10342000	22778000	0	0	0	0	0	0	0	0	0	30375	5029	28742	188200	254328	254328			1	
LFSVPDFVGDACK	1	Unmodified	1453.6912	0.69115139	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		83.279	82.638	2	0.00079618	72697	160511_QHF_FH_JSI11i_2	66.262	45.264			1.5996	1.9161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5996	1.9161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15094000	7903400	7191100	0	0	0	15094000	7903400	7191100	0	0	0	0	0	0	30376	2573	28743	188201;188202	254329;254330	254329			2	
LFSWLVNR	0	Unmodified	1033.5709	0.57090032	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			76.633	70.383	2	0.0162	38427	160513_QHF_FH_JSI10Kac_6	68.312	0			0.74417	0.89013	55.25	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74417	0.89013	55.25	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168450000	81607000	86842000	0	0	0	168450000	81607000	86842000	0	0	0	0	0	0	30377	376	28744	188203;188204	254331;254332	254331			2	
LFTAESLIGLK	1	Unmodified	1190.6911	0.69107503	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	2	4	3	83.833	80.311	2	9.7344E-05	40893	160513_QHF_FH_JSI11Kac_6	96.342	68.137			0.96261	0.96356	26.66	12	5	Median	1.1961	1.0007	12.947	3	1	Median	0.8655	1.0391	21.083	2	0	Median	0.90949	0.85497	35.785	4	2	Median	0.93336	1.0714	17.7	3	2	Median	1610400000	736790000	873650000	328550000	140040000	188510000	318830000	152180000	166650000	564190000	261580000	302610000	398870000	182990000	215890000	30378	1620	28745	188205;188206;188207;188208;188209;188210;188211;188212;188213;188214;188215;188216	254333;254334;254335;254336;254337;254338;254339;254340;254341;254342;254343;254344;254345;254346;254347;254348;254349;254350;254351;254352;254353	254341			21	
LFTAHNNMTNYATVWASK	1	Oxidation (M)	2083.9786	0.97855964	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	59.269	54.231	3	2.5339E-56	29718	160513_QHF_FH_JSI10Kac_6	191.64	168			0.90351	0.88664	16.178	8	0	Median	0.9982	0.82834	21.503	2	0	Median	0.69882	0.81217	14.752	2	0	Median	1.0609	1.0165	21.674	2	0	Median	0.87972	0.91075	6.9519	2	0	Median	917770000	471290000	446480000	329000000	147610000	181380000	250190000	151260000	98933000	237990000	117190000	120810000	100590000	55232000	45353000	30379	2265	28746	188217;188218;188219;188220;188221;188222;188223;188224	254354;254355;254356;254357;254358;254359;254360;254361;254362;254363;254364;254365;254366;254367;254368;254369;254370;254371;254372;254373;254374	254374		1871	21	
LFTAHNNMTNYATVWASK	1	Unmodified	2067.9836	0.98364501	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	4	3	2	69.364	65.317	2;3	1.799E-68	35578	160513_QHF_FH_JSI10Kac_6	248.2	206.66			0.96193	0.87467	15.263	12	1	Median	0.94089	0.74493	16.555	3	0	Plateau	0.6595	0.7768	13.619	4	1	Median	1.0648	1.0117	1.2493	3	0	Plateau	0.91075	0.94879	15.015	2	0	Median	5353800000	2793100000	2560700000	1330200000	569300000	760950000	1846600000	1052600000	793980000	1692200000	917030000	775130000	484790000	254200000	230590000	30380	2265	28746	188225;188226;188227;188228;188229;188230;188231;188232;188233;188234;188235;188236	254375;254376;254377;254378;254379;254380;254381;254382;254383;254384;254385;254386;254387;254388;254389;254390;254391;254392;254393;254394;254395;254396;254397;254398;254399;254400;254401;254402;254403;254404;254405	254405			31	
LFTAIGYSESTHNLTLPK	1	Unmodified	1991.0364	0.036392091	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	71.258	70.898	3	6.4502E-05	63139	160511_QHF_FH_JSI11i_3	66.12	55.652			1.1085	1.116	8.161	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97909	1.1919	NaN	1	0	Median	1.0714	1.0134	NaN	1	0	Median	1.1085	1.116	NaN	1	0	Median	295880000	151450000	144430000	0	0	0	37637000	12040000	25598000	84216000	42651000	41565000	174030000	96764000	77268000	30381	3196	28747	188237;188238;188239	254406;254407;254408	254406			3	
LFTAYLQLYR	0	Unmodified	1286.7023	0.70230842	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	81.727	74.24	2	0.00017486	41516	160513_QHF_FH_JSI10Kac_6	93.162	71.699			0.96788	1.1305	30.685	4	4	Median	NaN	NaN	NaN	0	0	Median	0.96788	1.1305	6.1798	2	2	Median	1.9367	1.8862	NaN	1	1	Median	0.87886	0.92402	NaN	1	1	Median	572980000	279220000	293760000	0	0	0	404760000	192910000	211840000	96671000	44985000	51685000	71554000	41323000	30231000	30382	708	28748	188240;188241;188242;188243	254409;254410;254411;254412	254412			4	
LFTDLFDRK	1	Unmodified	1153.6132	0.61315906	5738	Q9Y6M4	CSNK1G3	Casein kinase I isoform gamma-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		61.797	60.786	3	0.0019977	49885	160511_QHF_FH_JSI9i_3	52.49	42.118			0.95909	0.82433	7.3863	3	0	Median	0.95909	0.80457	NaN	1	0	Median	0.73283	0.82433	NaN	1	0	Median	1.0201	0.92393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90996000	47706000	43290000	34752000	15907000	18846000	22933000	13314000	9619100	33311000	18486000	14825000	0	0	0	30383	5738	28749	188244;188245;188246	254413;254414;254415;254416;254417	254416			5	
LFTEEELAR	0	Unmodified	1106.5608	0.56078914	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	43.336	42.523	2	0.00035439	36301	160511_QHF_FH_JSI12i_2	82.279	49.438			0.95786	0.93265	14.156	6	1	Median	1.1035	0.93943	NaN	1	0	Median	0.68527	0.85242	NaN	1	0	Median	0.85888	0.86668	9.3515	2	1	Median	1.0414	1.1348	0.13916	2	0	Median	1197300000	604980000	592300000	203770000	93709000	110060000	215690000	127610000	88084000	532330000	260070000	272250000	245500000	123590000	121910000	30384	5428	28750	188247;188248;188249;188250;188251;188252	254418;254419;254420;254421;254422;254423;254424	254421			7	
LFTFHADICTLPDTEK	1	Unmodified	1906.9135	0.91349976	50	CON__P02769			yes	yes	0	0	0	0			By matching	By MS/MS	3	0			4									1	3	74.198	73.98	2;3	7.9438E-10	64187	160511_QHF_FH_JSI12i_3	185.27	160.97		+	0.87228	0.89448	21.551	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67047	0.62359	NaN	1	0	Median	0.94448	0.93257	8.8705	3	2	Median	348460000	204340000	144120000	0	0	0	0	0	0	103060000	65682000	37373000	245400000	138660000	106740000	30385	50	28751	188253;188254;188255;188256	254425;254426;254427	254426			3	
LFTFLPLPEIDHIMQLHVK	1	Unmodified	2290.2548	0.25478148	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	2	5	2	2	99.239	95.104	3;4	5.3223E-19	47495	160513_QHF_FH_JSI12Kac_6	143.67	137.96			0.97816	0.99689	13.305	11	3	Median	1.2401	1.0549	2.6617	2	0	Median	0.84402	0.97507	19.393	5	3	Median	0.9952	0.93218	1.6163	2	0	Median	0.99409	1.041	4.3902	2	0	Median	2410900000	1229900000	1181100000	277750000	145310000	132450000	945170000	513790000	431380000	435300000	193780000	241520000	752710000	377000000	375720000	30386	5549	28752	188257;188258;188259;188260;188261;188262;188263;188264;188265;188266;188267	254428;254429;254430;254431;254432;254433;254434;254435;254436;254437;254438;254439;254440;254441;254442;254443;254444;254445;254446	254442			19	
LFTFLPLPEIDHIMQLHVK	1	Oxidation (M)	2306.2497	0.24969611	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By matching	By MS/MS	16	0									3	1		1	1	92	82.803	4	9.3018E-07	46352	160513_QHF_FH_JSI9Kac_6	88.385	70.151			1.064	1.0162	40.458	3	1	Median	1.718	1.4725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.064	1.0162	NaN	1	0	Median	0.62018	0.6562	NaN	1	1	Median	160660000	89006000	71652000	50231000	17151000	33080000	0	0	0	29585000	16153000	13432000	80842000	55702000	25141000	30387	5549	28752	188268;188269;188270	254447;254448;254449	254447		2693	3	
LFTHTIVPGQVLFVPDANSPSSTLR	0	Unmodified	2695.4334	0.43335079	3673	Q8NI08	NCOA7	Nuclear receptor coactivator 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		93.442	92.419	3	0.0019747	75684	160511_QHF_FH_JSI9i_3	35.94	28.58			1.2224	1.2008	1.1688	2	0	Median	1.408	1.1909	NaN	1	0	Median	1.0613	1.2108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22096000	11514000	10582000	10463000	5235300	5227600	11633000	6278800	5354000	0	0	0	0	0	0	30388	3673	28753	188271;188272;188273	254450;254451;254452;254453;254454	254454			5	
LFTIGGVQK	1	Unmodified	961.55967	0.55966693	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	48.887	48.038	2	0.0025484	41026	160511_QHF_FH_JSI12i_3	64.207	37.245			1.14	1.0582	14.532	7	1	Median	1.524	1.2701	5.718	2	1	Median	0.86909	1.0266	3.3651	2	0	Median	1.0379	0.99725	8.3883	2	0	Median	1.33	1.3744	NaN	1	0	Median	474030000	221790000	252230000	67369000	30146000	37223000	106250000	59276000	46974000	155040000	71485000	83559000	145360000	60885000	84478000	30389	560	28754	188274;188275;188276;188277;188278;188279;188280	254455;254456;254457;254458;254459	254459			5	
LFTLAESLGGFESLAELPAIMTHASVLK	1	Unmodified	2944.562	0.5619817	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	1	5	2	102.86	101.31	3;4	3.7066E-32	92522	160511_QHF_FH_JSI11i_3	148.02	145.51			0.94461	0.8985	31.802	10	5	Median	1.1551	1.0184	12.334	2	1	Median	0.39549	0.47414	NaN	1	1	Median	0.98079	1.0019	35.19	5	3	Median	0.81212	0.823	2.0538	2	0	Median	588430000	358440000	229990000	49731000	22101000	27630000	96042000	77338000	18704000	321630000	195730000	125900000	121020000	63265000	57758000	30390	1397	28755	188281;188282;188283;188284;188285;188286;188287;188288;188289;188290	254460;254461;254462;254463;254464;254465;254466;254467;254468;254469;254470;254471;254472;254473	254460			14	
LFTLPLLHYLEVSGCGSLR	0	Unmodified	2174.1558	0.15579572	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.434	89.713	3	2.2738E-13	51747	160513_QHF_FH_JSI10Kac_6	127.5	97.072			0.95124	1.1342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95124	1.1342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75501000	48641000	26860000	0	0	0	75501000	48641000	26860000	0	0	0	0	0	0	30391	3506	28756	188291	254474	254474			1	
LFTLTALR	0	Unmodified	933.56475	0.56475231	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.14			5					1	2	3	3	1	1	70.095	66.199	2	5.8697E-05	35095	160513_QHF_FH_JSI9Kac_6	128.57	66.569			0.98273	0.94121	16.499	8	3	Median	1.2894	1.0333	7.4324	3	2	Plateau	0.9382	1.0661	20.345	3	1	Median	0.94384	0.88879	NaN	1	0	Median	0.72131	0.71826	NaN	1	0	Median	1063300000	508880000	554440000	480360000	218600000	261760000	356180000	194240000	161930000	122770000	48205000	74560000	104010000	47823000	56192000	30392	1609	28757	188292;188293;188294;188295;188296;188297;188298;188299	254475;254476;254477;254478;254479;254480;254481;254482	254480			8	
LFTNFSGADLLK	1	Unmodified	1324.7027	0.70270235	2308	Q12800	TFCP2	Alpha-globin transcription factor CP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.905	80.792	2	0.0034271	72160	160511_QHF_FH_JSI11i_3	63.694	35.295			1.02	0.99537	27.975	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88389	0.81672	NaN	1	1	Median	1.177	1.2131	NaN	1	0	Median	85143000	41710000	43433000	0	0	0	0	0	0	44055000	22054000	22001000	41088000	19656000	21433000	30393	2308	28758	188300;188301	254483;254484;254485	254483			3	
LFTPDVIR	0	Unmodified	959.54402	0.54401687	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.345	55.399	2	0.0036417	47958	160511_QHF_FH_JSI11i_2	71.134	17.077			0.97054	1.0356	10.824	4	0	Median	1.4867	1.2633	NaN	1	0	Median	0.81446	0.99348	NaN	1	0	Median	1.0298	1.0435	NaN	1	0	Median	0.91472	1.0278	NaN	1	0	Median	558960000	268770000	290190000	95600000	40322000	55278000	125900000	67513000	58382000	177500000	72179000	105320000	159960000	88758000	71204000	30394	1225	28759	188302;188303;188304;188305	254486;254487;254488	254488			3	
LFTPSPEIVK	1	Unmodified	1129.6383	0.63831118	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							2	1	2	1	58.327	57.159	2	1.6316E-05	48999	160511_QHF_FH_JSI12i_2	99.442	73.058			0.70952	0.60738	24.847	5	4	Median	0.88394	0.73605	34.09	2	2	Median	0.45471	0.52973	NaN	1	1	Median	0.85523	0.83685	NaN	1	1	Median	0.54252	0.60738	NaN	1	0	Median	569060000	327140000	241920000	182420000	94296000	88123000	28192000	18267000	9924400	83864000	48916000	34948000	274580000	165660000	108920000	30395	3709	28760	188306;188307;188308;188309;188310;188311	254489;254490;254491;254492;254493;254494;254495	254490			7	
LFTPYTETEINEEELTKPR	1	Unmodified	2309.1427	0.14270766	1276	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		67.819	67.819	3	1.5185E-10	60384	160511_QHF_FH_JSI11i_3	121.74	99.086			0.86999	0.79594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86999	0.79594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92930000	44117000	48812000	0	0	0	0	0	0	92930000	44117000	48812000	0	0	0	30396	1276	28761	188312	254496	254496			1	
LFTSDLQDK	1	Unmodified	1065.5342	0.53424004	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				36.83	35.787	2	0.060329	31202	160511_QHF_FH_JSI9i_2	42.19	26.809			0.68498	0.58626	NaN	1	1	Median	0.68498	0.58626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66122000	32617000	33505000	66122000	32617000	33505000	0	0	0	0	0	0	0	0	0	30397	3657	28762	188313	254497	254497			1	
LFTSDSSTTK	1	Unmodified	1085.5241	0.52406928	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		15.398	15.214	2	0.0033239	12686	160511_QHF_FH_JSI10i_1	70.056	45.162			1.7085	1.8096	2.0206	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5321	1.8356	NaN	1	1	Median	1.9053	1.7839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145140000	66315000	78822000	0	0	0	77947000	35688000	42259000	67189000	30626000	36563000	0	0	0	30398	1347	28763	188314;188315	254498;254499	254499			2	
LFTTMELMR	0	Unmodified	1140.5671	0.56713685	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	3	3	69.537	66.973	2	0.00030808	59885	160511_QHF_FH_JSI11i_3	93.162	59.366			1.1057	1.112	30.14	10	2	Median	1.3194	1.1063	0.53162	2	0	Median	0.92707	1.1103	20.335	2	0	Median	0.96657	0.97732	15.541	3	1	Median	1.0403	1.1546	48.434	3	1	Plateau	1754000000	816390000	937640000	273800000	102150000	171650000	353810000	192270000	161540000	685000000	314870000	370130000	441410000	207090000	234320000	30399	110	28764	188316;188317;188318;188319;188320;188321;188322;188323;188324;188325	254500;254501;254502;254503;254504;254505;254506;254507;254508;254509;254510;254511;254512	254500			13	
LFTTTEQDEQGSK	1	Unmodified	1482.6838	0.6838174	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.995	21.468	2	3.3266E-05	18455	160511_QHF_FH_JSI10i_1	117.7	96.828			1.3609	1.0548	26.752	4	4	Linear	1.3708	1.1391	NaN	1	1	Median	1.6488	1.985	NaN	1	1	Median	1.3511	1.3142	NaN	1	1	Median	1.0917	1.1151	NaN	1	1	Median	313000000	148800000	164200000	87656000	39865000	47792000	64929000	28972000	35957000	74679000	36851000	37828000	85733000	43110000	42623000	30400	2547	28765	188326;188327;188328;188329	254513;254514;254515;254516	254515			4	
LFTVPWPVK	1	Unmodified	1085.6274	0.62735256	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	87.635	87.013	2	9.3885E-06	72657	160511_QHF_FH_JSI10i_3	111.82	102.23			0.96722	1.0224	13.889	8	0	Median	1.1758	0.97396	24.13	2	0	Median	0.8195	0.96539	11.345	2	0	Median	1.0634	1.0228	11.383	2	0	Median	1.0464	1.1161	15.639	2	0	Median	437600000	216820000	220780000	75717000	36102000	39615000	86167000	44185000	41982000	153710000	79260000	74452000	122010000	57278000	64728000	30401	4578	28766	188330;188331;188332;188333;188334;188335;188336;188337	254517;254518;254519;254520;254521;254522;254523;254524;254525;254526;254527;254528;254529	254520			13	
LFTVQIPHK	1	Unmodified	1081.6284	0.6284152	4865	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	52.021	51.176	3	6.2684E-05	41880	160511_QHF_FH_JSI9i_3	83.948	74.989			0.94695	0.97952	8.9412	4	0	Median	1.2551	1.0191	NaN	1	0	Median	0.85305	0.95678	NaN	1	0	Median	0.87995	0.83686	NaN	1	0	Median	1.0191	1.0028	NaN	1	0	Median	551750000	285900000	265860000	122900000	55877000	67020000	102710000	50062000	52650000	108040000	64078000	43964000	218100000	115880000	102220000	30402	4865	28767	188338;188339;188340;188341	254530;254531;254532;254533;254534;254535;254536;254537	254534			8	
LFTVVAWDPR	0	Unmodified	1202.6448	0.64479354	3354	Q86WA6	BPHL	Valacyclovir hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	2	2	3	79.772	74.718	2	7.9497E-11	39345	160513_QHF_FH_JSI11Kac_6	163.32	109.35			0.96767	0.98103	18.061	9	4	Median	1.1506	0.96724	23.604	2	1	Median	0.79602	0.9442	5.4114	2	0	Median	1.1669	1.0849	30.38	2	1	Median	1.0443	1.1209	17.299	3	2	Median	939740000	523600000	416140000	174810000	97566000	77244000	308820000	188310000	120510000	210860000	107810000	103050000	245250000	129910000	115340000	30403	3354	28768	188342;188343;188344;188345;188346;188347;188348;188349;188350	254538;254539;254540;254541;254542;254543;254544;254545;254546	254540			8	
LFVASNQGALHIVQLSGGSFK	1	Unmodified	2172.1691	0.1691376	3954	Q969X6	CIRH1A	Cirhin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			4						1	1	3	1		82.657	80.783	3	4.2351E-13	73465	160511_QHF_FH_JSI11i_3	116.98	89.125			0.71287	0.7918	23.063	5	2	Median	1.072	0.87306	NaN	1	0	Median	0.71287	0.7918	26.246	3	2	Median	0.63487	0.59387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	372910000	217260000	155640000	38055000	17631000	20424000	255580000	144630000	110950000	79275000	55002000	24273000	0	0	0	30404	3954	28769	188351;188352;188353;188354;188355	254547;254548;254549;254550;254551;254552;254553	254548			7	
LFVDTDADTR	0	Unmodified	1151.5459	0.54586736	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.917	36.306	2	0.0069734	32884	160511_QHF_FH_JSI12i_1	61.691	51.277			0.75559	0.80954	29.02	4	4	Median	0.61842	0.50761	NaN	1	1	Median	0.67222	0.79958	NaN	1	1	Median	0.8493	0.81964	NaN	1	1	Median	0.96456	1.0111	NaN	1	1	Median	607820000	309790000	298040000	107520000	60682000	46840000	180380000	94242000	86140000	158630000	87313000	71312000	161290000	67548000	93743000	30405	4574	28770	188356;188357;188358;188359	254554;254555;254556;254557	254555			4	
LFVEALGQIGPAPPLK	1	Unmodified	1648.9552	0.95522864	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								1	2	3	3	93.896	93.428	2;3	6.3789E-07	80625	160511_QHF_FH_JSI12i_2	125.22	101.23			1.3116	1.1343	18.429	9	6	Median	1.3364	1.1343	NaN	1	1	Median	0.79972	0.98761	18.449	2	1	Median	1.3116	1.2975	17.754	3	2	Median	1.3149	1.4406	20.462	3	2	Median	138060000	65732000	72333000	7392100	2187800	5204300	29116000	16758000	12358000	55841000	24589000	31252000	45715000	22197000	23518000	30406	1296	28771	188360;188361;188362;188363;188364;188365;188366;188367;188368	254558;254559;254560;254561;254562;254563;254564;254565;254566;254567	254560			9	
LFVGGLDWSTTQETLR	0	Unmodified	1821.9261	0.92611336	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.3		7	6						3	4	4	4	4	88.536	86.352	2;3	2.3778E-116	77184	160511_QHF_FH_JSI12i_3	270.74	244.72			1.1556	1.1095	17.105	16	4	Median	1.2779	1.0767	14.827	4	1	Median	0.95414	1.1305	28.601	4	1	Median	1.1938	1.1313	7.5403	4	1	Median	1.0875	1.1399	14.955	4	1	Median	2371200000	1118400000	1252700000	327960000	128780000	199190000	266530000	146110000	120420000	876700000	381920000	494780000	899970000	461610000	438350000	30407	4053	28772	188369;188370;188371;188372;188373;188374;188375;188376;188377;188378;188379;188380;188381;188382;188383;188384	254568;254569;254570;254571;254572;254573;254574;254575;254576;254577;254578;254579;254580;254581;254582;254583;254584;254585;254586;254587;254588;254589;254590;254591	254590			24	
LFVGGLK	1	Unmodified	732.45341	0.45341094	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.43	7	8	12				3	6	8	7	12	14	11	45.103	40.786	2	0.011089	34516	160511_QHF_FH_JSI10i_3	72.021	0			0.98381	1.0088	15.531	44	0	Median	1.176	0.99226	9.4103	7	0	Median	0.92636	1.1137	11.851	12	0	Median	1.0578	1.0206	12.315	14	0	Median	0.81961	0.86694	20.466	11	0	Median	70060000000	32213000000	37847000000	12534000000	5500900000	7033300000	14518000000	7049300000	7468500000	20443000000	8965900000	11477000000	22565000000	10697000000	11868000000	30408	2361	28773	188385;188386;188387;188388;188389;188390;188391;188392;188393;188394;188395;188396;188397;188398;188399;188400;188401;188402;188403;188404;188405;188406;188407;188408;188409;188410;188411;188412;188413;188414;188415;188416;188417;188418;188419;188420;188421;188422;188423;188424;188425;188426;188427;188428	254592;254593;254594;254595;254596;254597;254598;254599;254600;254601;254602;254603;254604;254605;254606;254607;254608;254609;254610;254611;254612;254613;254614;254615;254616;254617;254618;254619;254620;254621;254622;254623;254624;254625;254626;254627;254628;254629;254630;254631;254632;254633;254634;254635;254636;254637;254638;254639;254640;254641;254642;254643;254644;254645;254646;254647;254648;254649;254650;254651	254610			60	
LFVGGLNFNTDEQALEDHFSSFGPISEVVVVK	1	Unmodified	3493.7406	0.74055101	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	96.627	89.666	3;4	1.2683E-123	52656	160513_QHF_FH_JSI10Kac_6	232.47	207.02			0.67437	0.79898	38.756	3	1	Median	NaN	NaN	NaN	0	0	Median	0.55164	0.65296	28.54	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1017	1.1582	NaN	1	0	Median	582950000	353640000	229310000	0	0	0	387350000	265010000	122340000	0	0	0	195600000	88626000	106970000	30409	2141	28774	188429;188430;188431	254652;254653;254654	254653			3	
LFVGNLPADITEDEFK	1	Unmodified	1806.904	0.90398093	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.774	8	8	5							4	4	5	8	94.085	93.722	2;3	2.4622E-65	85344	160511_QHF_FH_JSI11i_1	226.73	203.5			1.2908	1.3174	24.286	18	0	Median	1.3806	1.147	16.892	4	0	Median	1.1056	1.3174	7.7745	4	0	Median	1.4868	1.459	39.415	5	0	Median	1.2577	1.3732	22.299	5	0	Median	2183800000	1025500000	1158300000	453910000	207990000	245920000	455620000	224750000	230880000	418210000	173880000	244330000	856060000	418900000	437160000	30410	1222	28775	188432;188433;188434;188435;188436;188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447;188448;188449;188450;188451;188452	254655;254656;254657;254658;254659;254660;254661;254662;254663;254664;254665;254666;254667;254668;254669;254670;254671;254672;254673;254674;254675;254676;254677;254678;254679;254680;254681;254682;254683;254684;254685;254686;254687;254688;254689;254690;254691;254692;254693;254694;254695;254696;254697	254659			43	
LFVGNLPADITEDEFKR	1	Unmodified	1963.0051	0.005091963	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				83.414	82.807	3	0.014871	73017	160511_QHF_FH_JSI9i_2	38.417	28.496			2.6644	2.2661	NaN	1	1	Median	2.6644	2.2661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28955000	4026600	24928000	28955000	4026600	24928000	0	0	0	0	0	0	0	0	0	30411	1222	28776	188453	254698	254698			1	
LFVGNLPPDITEEEMR	0	Unmodified	1858.9135	0.91349976	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.623	7	6	1							2	2	5	5	83.49	82.808	2	9.5784E-17	72719	160511_QHF_FH_JSI11i_2	169.23	134.34			0.9841	1.0114	14.936	10	4	Median	1.2987	1.101	1.803	2	1	Median	0.80053	0.94472	18.141	2	1	Median	1.0623	1.0114	6.1209	3	1	Plateau	0.83047	0.92211	25.557	3	1	Median	296310000	150960000	145360000	56615000	25170000	31445000	58097000	33090000	25008000	122740000	61847000	60888000	58865000	30850000	28016000	30412	2644	28777	188454;188455;188456;188457;188458;188459;188460;188461;188462;188463;188464;188465;188466;188467	254699;254700;254701;254702;254703;254704;254705;254706;254707;254708;254709;254710;254711;254712;254713;254714;254715;254716;254717;254718;254719;254720;254721	254716			23	
LFVGNLPPDITEEEMRK	1	Unmodified	1987.0085	0.0084627814	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.497		9	11							2	5	6	7	74.251	73.557	2;3	3.7755E-16	65110	160511_QHF_FH_JSI10i_2	127.83	102.92			1.0005	1.1694	26.982	16	5	Median	1.0444	0.89786	35.666	2	1	Median	0.97408	1.1835	10.628	5	1	Median	1.3422	1.3584	22.85	5	2	Median	0.93745	1.0147	41.531	4	1	Median	4477500000	2113000000	2364500000	409900000	185810000	224090000	1486100000	753850000	732210000	1745900000	756830000	989050000	835670000	416550000	419130000	30413	2644	28778	188468;188469;188470;188471;188472;188473;188474;188475;188476;188477;188478;188479;188480;188481;188482;188483;188484;188485;188486;188487	254722;254723;254724;254725;254726;254727;254728;254729;254730;254731;254732;254733;254734;254735;254736;254737;254738;254739;254740;254741;254742;254743;254744;254745;254746;254747;254748;254749;254750;254751;254752;254753;254754;254755;254756;254757;254758;254759;254760;254761;254762;254763;254764;254765;254766;254767;254768;254769;254770;254771;254772;254773;254774;254775;254776;254777;254778	254759			57	
LFVGNLPTDITEEDFK	1	Unmodified	1836.9145	0.91454562	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	92.251	91.779	2	3.8533E-30	79172	160511_QHF_FH_JSI12i_2	191.26	155.71			0.94326	0.96859	13.346	6	0	Median	1.0774	0.92579	NaN	1	0	Median	0.85464	1.05	NaN	1	0	Median	1.1173	1.0863	15.413	2	0	Median	0.80741	0.88379	12.148	2	0	Median	242480000	131370000	111110000	30006000	13358000	16647000	34572000	19226000	15346000	100320000	51175000	49147000	77580000	47608000	29971000	30414	3809	28779	188488;188489;188490;188491;188492;188493	254779;254780;254781;254782;254783;254784;254785;254786;254787;254788	254781			10	
LFVGSIPK	1	Unmodified	859.51674	0.51673948	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	50.515	49.712	2	0.0043669	43759	160511_QHF_FH_JSI11i_3	68.915	42.806			0.99661	1.0462	13.069	11	0	Median	1.3136	1.0657	12.658	2	0	Median	0.88707	1.0462	5.118	3	0	Median	1.2136	1.2353	14.546	3	0	Plateau	0.82255	1.0126	17.939	3	0	Plateau	6817700000	3236500000	3581100000	1069200000	519730000	549510000	1370200000	737790000	632400000	2333200000	1039700000	1293500000	2045100000	939330000	1105800000	30415	423;326	28780	188494;188495;188496;188497;188498;188499;188500;188501;188502;188503;188504	254789;254790;254791;254792;254793;254794;254795;254796;254797;254798;254799;254800;254801;254802;254803;254804;254805;254806;254807;254808;254809	254790			21	
LFVINEVCEMK	1	Unmodified	1380.6781	0.67814386	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		73.311	72.612	2	9.6591E-05	63737	160511_QHF_FH_JSI11i_2	98.943	71.828			0.72934	0.80991	11.067	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71153	0.87584	NaN	1	0	Median	0.74759	0.74895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101770000	58154000	43618000	0	0	0	33798000	17577000	16221000	67974000	40577000	27397000	0	0	0	30416	3723	28781	188505;188506	254810;254811	254810			2	
LFVLFGAEILK	1	Unmodified	1248.7482	0.74819598	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.63	6.72		4	5						10	6	5	4	4	98.349	93.572	2	7.341E-13	88628	160511_QHF_FH_JSI12i_3	142.92	113.84			0.92012	0.91293	18.462	18	3	Median	1.0913	0.94321	18.831	6	2	Median	0.75738	0.89893	15.92	4	1	Median	0.92677	0.90548	7.3932	4	0	Median	0.74598	0.80594	25.423	4	0	Median	10014000000	5298800000	4715400000	2552200000	1121100000	1431100000	2502400000	1473000000	1029500000	2634200000	1378200000	1256000000	2325300000	1326500000	998790000	30417	1471	28782	188507;188508;188509;188510;188511;188512;188513;188514;188515;188516;188517;188518;188519;188520;188521;188522;188523;188524;188525	254812;254813;254814;254815;254816;254817;254818;254819;254820;254821;254822;254823;254824;254825;254826;254827;254828;254829;254830;254831;254832;254833;254834;254835;254836;254837;254838	254831			27	
LFVLFGAEILKK	2	Unmodified	1376.8432	0.843159	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	7.33	6.13			4						2	2	2		2	96.579	96.164	3	2.7004E-10	43403	160513_QHF_FH_JSI9Kac_6	124.12	109.25			0.41942	0.42123	30.308	3	3	Median	0.48376	0.42123	NaN	1	1	Median	0.21481	0.2606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41942	0.45644	NaN	1	1	Median	21139000	15791000	5348200	5155200	3553100	1602100	5878200	5290100	588090	0	0	0	10106000	6947800	3158000	30418	1471	28783	188526;188527;188528;188529;188530;188531	254839;254840;254841;254842;254843;254844	254841			6	
LFVLLPEQSPVSYSK	1	Unmodified	1705.9291	0.92907347	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	3	2	2	89.761	89.161	2;3	1.0275E-06	78396	160511_QHF_FH_JSI11i_2	130.01	116.1			0.79852	0.89632	56.081	8	7	Median	1.4396	1.2652	NaN	1	1	Median	0.52147	0.63502	67.634	3	3	Median	0.96797	0.99283	85.641	2	1	Median	0.78052	0.83435	63.14	2	2	Median	166030000	84977000	81048000	17030000	6314400	10716000	47077000	25061000	22016000	64675000	31789000	32886000	37243000	21813000	15430000	30419	4152	28784	188532;188533;188534;188535;188536;188537;188538;188539	254845;254846;254847;254848;254849;254850;254851;254852;254853	254850			9	
LFVLLQTSK	1	Unmodified	1047.6328	0.63283187	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.7	6.13			1						2	1	1	1		71.778	67.779	2	0.0037877	36648	160513_QHF_FH_JSI10Kac_6	72.23	24.361			1.1891	1.1492	17.152	2	0	Median	1.266	1.0179	NaN	1	0	Median	1.1169	1.2973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	611370000	251390000	359980000	418470000	181200000	237270000	192900000	70197000	122700000	0	0	0	0	0	0	30420	4152	28785	188540;188541;188542	254854;254855;254856	254856			3	
LFVLLQTSKK	2	Unmodified	1175.7278	0.72779489	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.461	54.14	3	0.04284	29838	160513_QHF_FH_JSI10Kac_6	29.936	16.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30421	4152	28786	188543	254857	254857			1	
LFVLTTK	1	Unmodified	820.50584	0.50584045	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	49.775	48.904	2	0.011062	41681	160511_QHF_FH_JSI12i_3	72.138	25.768			1.1019	0.89592	33.877	5	1	Median	1.1019	0.89592	NaN	1	0	Median	0.62474	0.73007	24.767	2	1	Median	1.1658	1.1007	NaN	1	0	Median	1.4863	1.5416	NaN	1	0	Median	651520000	298820000	352700000	81664000	35385000	46279000	174680000	98517000	76161000	192540000	79701000	112840000	202640000	85222000	117420000	30422	4225	28787	188544;188545;188546;188547;188548	254858;254859;254860;254861;254862;254863	254862			6	
LFVPALDKPETDLLSHLDR	1	Unmodified	2178.1685	0.1684689	5438	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	94.562	94.291	4	1.3304E-09	83840	160511_QHF_FH_JSI11i_3	113.47	92.824			0.91378	0.84955	36.558	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1838	1.3121	NaN	1	0	Median	0.91378	0.84955	NaN	1	0	Median	0.6548	0.63455	NaN	1	1	Median	153980000	80895000	73085000	0	0	0	20564000	11263000	9301700	89230000	38993000	50237000	44186000	30639000	13547000	30423	5438	28788	188549;188550;188551	254864;254865;254866;254867;254868;254869	254865			6	
LFVPEPRPVPK	1	Unmodified	1277.7496	0.74959297	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	47.104	46.25	3	0.0042311	40741	160511_QHF_FH_JSI11i_3	47.844	38.332			0.96386	0.99153	10.254	4	0	Median	1.3432	1.0686	NaN	1	0	Median	0.9143	1.0513	NaN	1	0	Median	1.0161	0.93512	NaN	1	0	Median	0.85381	0.86015	NaN	1	0	Median	228440000	112750000	115690000	51999000	22551000	29448000	50866000	24034000	26832000	69330000	36356000	32974000	56247000	29808000	26439000	30424	3367	28789	188552;188553;188554;188555	254870;254871	254870			2	
LFVPNTQSGQR	0	Unmodified	1245.6466	0.64658446	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2.75	0.433		1	3							2	1	1		32.143	31.183	2	0.00074721	26051	160511_QHF_FH_JSI10i_3	68.735	47.833			0.91789	0.92671	41.434	4	1	Median	0.83598	0.69819	61.139	2	1	Median	0.69399	0.7983	NaN	1	0	Median	1.214	1.1058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	194820000	106710000	88111000	94884000	52640000	42244000	51168000	30522000	20646000	48765000	23544000	25221000	0	0	0	30425	2179	28790	188556;188557;188558;188559	254872;254873;254874;254875;254876	254873			5	
LFVPYTEMEIENEQVEKPR	1	Unmodified	2350.1515	0.1514982	1243	P24386	CHM	Rab proteins geranylgeranyltransferase component A 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		74.718	74.718	3	1.7782E-05	66646	160511_QHF_FH_JSI11i_3	80.238	72.245			1.0741	0.99627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0741	0.99627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38553000	14724000	23830000	0	0	0	0	0	0	38553000	14724000	23830000	0	0	0	30426	1243	28791	188560;188561	254877;254878;254879	254877			3	
LFVQDEK	1	Unmodified	877.45453	0.45453316	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	23.979	22.86	2	0.0052262	19026	160511_QHF_FH_JSI12i_2	102.77	37.97			0.498	0.48628	57.334	2	2	Median	0.37464	0.32421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66197	0.72939	NaN	1	1	Median	201900000	122680000	79214000	122400000	86249000	36148000	0	0	0	0	0	0	79498000	36433000	43066000	30427	5119	28792	188562;188563	254880;254881	254880			2	
LFVQDLATR	0	Unmodified	1061.5869	0.58694431	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	53.611	53.073	2	0.00081194	45513	160511_QHF_FH_JSI12i_2	73.665	41.73			0.74152	0.82289	1.6775	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85385	0.82289	NaN	1	1	Median	0.77823	0.82701	2.3371	2	1	Median	759510000	416620000	342890000	0	0	0	0	0	0	237730000	126710000	111030000	521780000	289920000	231860000	30428	1400	28793	188564;188565;188566;188567	254882;254883;254884;254885;254886	254884			5	
LFVSDGVPGCLPVLAAAGR	0	Unmodified	1898.0084	0.0084032019	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	2	3	97.286	97.148	2	1.8265E-10	86312	160511_QHF_FH_JSI11i_3	165.7	141.85			0.80343	0.90477	40.289	5	4	Median	NaN	NaN	NaN	0	0	Median	0.80343	0.94944	NaN	1	1	Median	0.73925	0.69765	36.764	2	1	Median	0.91983	1.0092	60.464	2	2	Median	92687000	47513000	45174000	0	0	0	17788000	9581200	8206400	46552000	22756000	23796000	28347000	15175000	13172000	30429	1872	28794	188568;188569;188570;188571;188572;188573	254887;254888;254889;254890;254891;254892;254893	254888			7	
LFVSGACDASAK	1	Unmodified	1224.5809	0.58087266	2030	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.67	4.64	2	3					1				2	2	2	33.801	31.171	2	0.00020373	26344	160511_QHF_FH_JSI12i_2	96.015	46.202			1.0016	1.2116	39.324	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0016	1.2116	NaN	1	1	Median	0.79107	0.8065	14.839	2	2	Median	1.4716	1.5937	35.926	2	2	Median	172770000	84316000	88458000	0	0	0	20511000	10837000	9674200	42659000	21563000	21096000	109600000	51917000	57687000	30430	2030	28795	188574;188575;188576;188577;188578;188579	254894;254895;254896;254897;254898;254899	254894			6	
LFVSVHLR	0	Unmodified	969.57599	0.5759857	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	59.495	50.141	3	0.0012666	27429	160513_QHF_FH_JSI10Kac_6	73.665	57.521			0.82016	0.88255	23.911	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64397	0.75943	NaN	1	0	Median	1.264	1.213	NaN	1	0	Median	0.82016	0.88255	NaN	1	0	Median	38815000	25414000	13401000	0	0	0	23481000	17366000	6114800	9384800	4751900	4632900	5949900	3296100	2653800	30431	4214	28796	188580;188581;188582	254900;254901;254902	254902			3	
LFVTGLFSLNQDIPAFK	1	Unmodified	1909.0349	0.034935528	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	3	6	4	4	98.992	94.165	2;3	1.3058E-296	88827	160511_QHF_FH_JSI12i_3	368.3	319.56			0.91849	0.90953	20.148	14	3	Median	0.98621	0.83003	44.559	3	1	Median	0.76204	0.89981	8.2066	3	1	Plateau	1.002	0.94356	16.305	4	0	Median	0.91849	0.95691	4.171	4	1	Median	8709300000	4784900000	3924400000	1653600000	907310000	746290000	2150500000	1247700000	902840000	2524200000	1269700000	1254500000	2381000000	1360200000	1020800000	30432	231	28797	188583;188584;188585;188586;188587;188588;188589;188590;188591;188592;188593;188594;188595;188596;188597;188598;188599	254903;254904;254905;254906;254907;254908;254909;254910;254911;254912;254913;254914;254915;254916;254917;254918;254919;254920;254921;254922;254923;254924;254925	254915			23	
LFVTNDAATILR	0	Unmodified	1332.7402	0.74015049	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.32	6.49	2	4	4				2	4	3	2	7	5	5	74.432	69.401	2	1.3644E-22	61502	160511_QHF_FH_JSI12i_3	170.99	122.71			0.99798	1.0348	12.617	19	3	Median	1.2662	1.0651	12.102	2	0	Median	0.94742	1.1363	11.162	7	2	Median	1.0459	1.0055	13.741	5	0	Median	0.9207	1.0105	16.354	5	1	Median	9144300000	4164700000	4979600000	1528600000	618420000	910210000	2796600000	1284400000	1512200000	3078600000	1445900000	1632800000	1740400000	815990000	924380000	30433	1721	28798	188600;188601;188602;188603;188604;188605;188606;188607;188608;188609;188610;188611;188612;188613;188614;188615;188616;188617;188618	254926;254927;254928;254929;254930;254931;254932;254933;254934;254935;254936;254937;254938;254939;254940;254941;254942;254943;254944;254945;254946;254947;254948;254949;254950;254951;254952;254953;254954	254952			29	
LFVTNDAATILRELEVQHPAAK	1	Unmodified	2435.3173	0.3172584	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			98.106	97.807	4	1.7547E-08	80818	160511_QHF_FH_JSI10i_3	95.48	88.682			1.0287	0.97492	22.714	2	0	Median	1.0308	0.83026	NaN	1	0	Median	1.0265	1.1448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58105000	25621000	32485000	18132000	8745100	9386700	39974000	16876000	23098000	0	0	0	0	0	0	30434	1721	28799	188619;188620	254955;254956;254957;254958;254959	254956			5	
LFVTPPEGSSR	0	Unmodified	1188.6139	0.61388734	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	41.964	41.286	2	3.77E-07	36009	160511_QHF_FH_JSI9i_2	118.33	82.978			0.96315	0.99037	6.324	6	1	Median	1.3376	1.1412	NaN	1	0	Median	0.80074	0.99462	NaN	1	0	Median	1.0562	1.0219	5.0319	2	0	Median	0.91231	0.97424	0.31921	2	1	Median	868310000	444420000	423890000	149490000	60511000	88978000	110180000	71829000	38347000	320180000	151200000	168980000	288460000	160880000	127580000	30435	2521	28800	188621;188622;188623;188624;188625;188626	254960;254961;254962;254963;254964;254965;254966;254967	254963			8	
LFVVDHVIK	1	Unmodified	1068.6332	0.63316622	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.108	53.146	3	0.00094435	45855	160511_QHF_FH_JSI11i_2	57.859	43.74			0.73708	0.83642	19.841	4	2	Median	0.66041	0.57078	NaN	1	1	Median	0.66368	0.81983	NaN	1	1	Median	0.84139	0.85334	NaN	1	0	Median	0.81859	0.86683	NaN	1	0	Median	71030000	40029000	31001000	11986000	5606200	6379500	22360000	13266000	9094300	23555000	14622000	8932700	13130000	6535300	6594700	30436	3331	28801	188627;188628;188629;188630	254968;254969;254970;254971;254972;254973	254972			6	
LFVVHLLPK	1	Unmodified	1064.6746	0.67463711	5197	Q9P209	CEP72	Centrosomal protein of 72 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	2	3	3	71.162	66.941	3	0.00010093	35801	160513_QHF_FH_JSI11Kac_6	92.439	69.699			0.98378	1.11	55.295	9	4	Median	0.57659	0.49335	94.74	2	1	Median	0.96735	1.1245	1.8389	2	0	Median	1.2034	1.1559	58.124	3	2	Median	0.93193	0.98413	29.889	2	1	Median	485380000	244000000	241370000	80713000	38884000	41829000	160550000	90184000	70365000	145030000	72533000	72500000	99081000	42403000	56678000	30437	5197	28802	188631;188632;188633;188634;188635;188636;188637;188638;188639;188640;188641	254974;254975;254976;254977;254978;254979;254980;254981;254982;254983;254984;254985;254986;254987;254988;254989	254979			16	
LFVVPADEAQAR	0	Unmodified	1314.6932	0.6932003	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	52.664	51.823	2	0.00011545	44833	160511_QHF_FH_JSI11i_2	103.7	92.871			0.64376	0.78549	51.751	7	4	Median	0.6661	0.55146	93.923	2	1	Median	0.56833	0.69042	18.244	2	2	Median	0.69576	0.69159	49.782	2	1	Median	1.1074	1.2427	NaN	1	0	Median	601380000	336840000	264550000	135980000	77565000	58411000	165820000	105280000	60536000	214260000	112780000	101480000	85328000	41209000	44119000	30438	3401	28803	188642;188643;188644;188645;188646;188647;188648	254990;254991;254992;254993;254994;254995;254996;254997;254998	254997			9	
LFVWEILHSTIR	0	Unmodified	1512.8453	0.84528426	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	90.466	82.156	2;3	4.8566E-20	47478	160513_QHF_FH_JSI10Kac_6	136.7	119.76			1.0033	0.94527	29.077	8	1	Median	1.0033	0.86253	2.3336	2	0	Median	0.84495	1.0077	36.043	2	0	Median	1.6246	1.5726	17.141	2	1	Median	0.89997	0.94527	6.8479	2	0	Median	2536700000	1326700000	1210000000	624580000	279870000	344710000	932630000	583830000	348800000	687560000	305770000	381790000	291950000	157220000	134730000	30439	2284	28804	188649;188650;188651;188652;188653;188654;188655;188656	254999;255000;255001;255002;255003;255004;255005;255006;255007;255008;255009;255010	255009			11	
LFVWEILHSTIRK	1	Unmodified	1640.9402	0.94024728	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	3	1	1	84.286	76.748	2;3;4	1.733E-25	43114	160513_QHF_FH_JSI10Kac_6	164.11	123.38			1.0424	1.2049	34.935	7	1	Median	0.86364	0.72951	16.11	2	1	Median	0.95632	1.1269	13.273	3	0	Plateau	2.0294	1.914	NaN	1	0	Median	1.1663	1.2049	NaN	1	0	Median	2282200000	1052000000	1230200000	307020000	159670000	147340000	1880500000	860600000	1019900000	75636000	21401000	54235000	19006000	10328000	8677400	30440	2284	28805	188657;188658;188659;188660;188661;188662;188663	255011;255012;255013;255014;255015;255016;255017;255018;255019;255020	255018			10	
LFVYDLHAVK	1	Unmodified	1203.6652	0.66519463	3596	Q8NBM4	UBAC2	Ubiquitin-associated domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.47	59.147	3	0.012874	50712	160511_QHF_FH_JSI12i_2	41.399	35.916			0.3451	0.38781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3451	0.38781	NaN	1	1	Median	9213600	6365100	2848500	0	0	0	0	0	0	0	0	0	9213600	6365100	2848500	30441	3596	28806	188664	255021	255021			1	
LFVYDPNNPPSSEVLR	0	Unmodified	1845.9261	0.92611336	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.97	4	4	2					2		3	3	4	2	74.89	72.351	2	1.8943E-80	65128	160511_QHF_FH_JSI10i_2	240.59	223.57			1.1173	1.055	18.743	11	2	Median	1.1749	0.98531	5.3947	3	0	Plateau	0.79846	0.95593	23.694	3	1	Plateau	1.16	1.1439	8.3027	3	1	Median	1.0547	1.1207	3.0276	2	0	Median	1940100000	935090000	1005000000	276320000	126730000	149590000	501360000	273740000	227630000	726450000	313820000	412630000	435950000	220800000	215150000	30442	2639	28807	188665;188666;188667;188668;188669;188670;188671;188672;188673;188674;188675;188676	255022;255023;255024;255025;255026;255027;255028;255029;255030;255031;255032;255033;255034;255035;255036;255037;255038;255039;255040;255041	255039			20	
LFWEWGDGIR	0	Unmodified	1277.6193	0.61930707	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	88.738	88.341	2	0.003101	76646	160511_QHF_FH_JSI12i_3	56.916	50.325			0.87872	0.82218	20.795	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0113	1.2045	NaN	1	0	Median	0.98093	0.93286	NaN	1	0	Median	0.78717	0.79779	NaN	1	0	Median	68027000	33388000	34639000	0	0	0	8329500	3950700	4378800	25121000	12829000	12292000	34576000	16608000	17969000	30443	3505	28808	188677;188678;188679	255042;255043;255044	255043			3	
LFWPFSK	1	Unmodified	923.49052	0.49052473	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	1	2	85.15	81.712	2	0.0054888	73680	160511_QHF_FH_JSI12i_3	100.74	72.23			1.0548	0.95329	7.1	6	0	Median	1.0913	0.90912	0.39541	2	0	Median	0.81189	0.92926	NaN	1	0	Median	1.1248	1.0743	NaN	1	0	Median	0.96522	1.007	4.1398	2	0	Median	433900000	206790000	227110000	123580000	59774000	63802000	60032000	32171000	27861000	82521000	42307000	40215000	167770000	72539000	95235000	30444	5599	28809	188680;188681;188682;188683;188684;188685;188686	255045;255046;255047;255048;255049;255050;255051;255052	255050			8	
LFWVAPR	0	Unmodified	887.50176	0.50175812	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.001	61.176	2	0.011089	50380	160511_QHF_FH_JSI9i_3	72.021	54.254			0.92971	0.89718	19.919	4	0	Median	1.0126	0.81084	NaN	1	0	Median	0.85358	0.99272	NaN	1	0	Median	1.3085	1.2291	NaN	1	0	Median	0.79083	0.80921	NaN	1	0	Median	210290000	105520000	104770000	54150000	28002000	26148000	42978000	23437000	19541000	45860000	23141000	22719000	67302000	30935000	36367000	30445	429	28810	188687;188688;188689;188690	255053;255054;255055;255056	255055			4	
LFYADHPFIFLVR	0	Unmodified	1636.8766	0.87658439	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	5.94		9	21	5	3		1		14	10	13	12	18	94.598	90.635	2;3	2.0841E-76	43886	160513_QHF_FH_JSI9Kac_6	236.33	209			1.0157	0.99045	27.15	46	16	Median	0.99063	0.81989	15.813	9	4	Median	0.75594	0.86886	23.392	10	4	Median	1.0612	1.0521	33.647	11	3	Median	1.0569	1.1262	26.535	16	5	Median	150710000000	68964000000	81746000000	39684000000	20087000000	19597000000	48358000000	24773000000	23584000000	41148000000	16121000000	25026000000	21522000000	7983200000	13538000000	30446	1706	28811	188691;188692;188693;188694;188695;188696;188697;188698;188699;188700;188701;188702;188703;188704;188705;188706;188707;188708;188709;188710;188711;188712;188713;188714;188715;188716;188717;188718;188719;188720;188721;188722;188723;188724;188725;188726;188727;188728;188729;188730;188731;188732;188733;188734;188735;188736;188737;188738;188739;188740;188741;188742;188743	255057;255058;255059;255060;255061;255062;255063;255064;255065;255066;255067;255068;255069;255070;255071;255072;255073;255074;255075;255076;255077;255078;255079;255080;255081;255082;255083;255084;255085;255086;255087;255088;255089;255090;255091;255092;255093;255094;255095;255096;255097;255098;255099;255100;255101;255102;255103;255104;255105;255106;255107;255108;255109;255110;255111;255112;255113;255114;255115;255116;255117;255118;255119;255120;255121;255122;255123;255124;255125;255126;255127;255128;255129;255130;255131;255132;255133;255134;255135;255136;255137;255138;255139;255140;255141;255142;255143;255144;255145	255122			88	
LFYEDGSGEK	1	Unmodified	1143.5084	0.50841922	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		29.213	28.609	2	1.3477E-05	25383	160511_QHF_FH_JSI10i_1	101.9	93.477			0.61668	0.71305	41.997	3	1	Median	1.5617	1.3229	NaN	1	0	Median	0.60908	0.71305	NaN	1	0	Median	0.61668	0.59346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	261510000	128990000	132520000	64863000	21774000	43089000	87923000	59122000	28801000	108720000	48098000	60627000	0	0	0	30447	236	28812	188744;188745;188746	255146;255147;255148	255147			3	
LFYHIVDSDEVSTK	1	Unmodified	1651.8094	0.80935227	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	2	1	2	2	56.009	52.912	2;3	2.8934E-10	47060	160511_QHF_FH_JSI11i_3	143.98	124.37			0.92646	0.87533	17.55	6	2	Median	0.86392	0.74694	10.334	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0358	0.98515	21.304	2	0	Median	0.94839	0.95498	7.7265	2	0	Median	1661300000	765780000	895520000	55066000	27421000	27645000	0	0	0	563460000	290050000	273420000	1042800000	448310000	594460000	30448	5479	28813	188747;188748;188749;188750;188751;188752;188753	255149;255150;255151;255152;255153;255154;255155;255156;255157;255158;255159	255150			10	
LFYIIPYFCGQHPR	0	Unmodified	1809.9025	0.90248157	5510	Q9Y2C2	UST	Uronyl 2-sulfotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.897	76.647	3	1.5522E-07	40679	160513_QHF_FH_JSI12Kac_6	106.49	95.548			1.2702	1.1953	22.373	4	0	Median	1.2732	1.0831	NaN	1	0	Median	0.99285	1.1548	NaN	1	0	Median	1.2672	1.2371	NaN	1	0	Median	1.6468	1.7853	NaN	1	0	Median	387070000	169700000	217370000	56453000	28697000	27756000	176580000	83073000	93505000	92215000	37868000	54347000	61821000	20058000	41763000	30449	5510	28814	188754;188755;188756;188757	255160;255161;255162;255163;255164;255165;255166;255167	255164			8	
LFYIYTSGTTGLPK	1	Unmodified	1559.8235	0.82354577	3092	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.395	71.111	2	7.6453E-11	38644	160513_QHF_FH_JSI11Kac_6	155	121.62			0.7535	0.74838	12.488	4	0	Median	1.0358	0.89213	NaN	1	0	Median	0.57956	0.66341	NaN	1	0	Median	0.82333	0.77333	NaN	1	0	Median	0.68959	0.72424	NaN	1	0	Median	217940000	127350000	90595000	49505000	24539000	24966000	83200000	49876000	33325000	53105000	35436000	17669000	32130000	17495000	14635000	30450	3092	28815	188758;188759;188760;188761	255168;255169;255170;255171;255172;255173;255174;255175	255169			8	
LFYLALPPTVYEAVTK	1	Unmodified	1824.0073	0.0073237944	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.3		8	9						8	7	6	6	6	99.769	96.908	2;3	4.1886E-25	49026	160513_QHF_FH_JSI9Kac_6	128.96	122.23			1.0063	1.0694	15.193	24	1	Median	1.3808	1.159	15.013	6	0	Median	1.002	1.1739	5.9295	6	0	Median	0.91935	0.8994	9.6636	6	0	Median	0.9929	1.0694	18.656	6	1	Median	16610000000	8106700000	8503000000	3252400000	1323400000	1929000000	3916300000	2042800000	1873500000	5172700000	2568700000	2604100000	4268200000	2171800000	2096300000	30451	1000	28816	188762;188763;188764;188765;188766;188767;188768;188769;188770;188771;188772;188773;188774;188775;188776;188777;188778;188779;188780;188781;188782;188783;188784;188785;188786	255176;255177;255178;255179;255180;255181;255182;255183;255184;255185;255186;255187;255188;255189;255190;255191;255192;255193;255194;255195;255196;255197;255198;255199;255200;255201;255202;255203;255204;255205;255206;255207;255208;255209;255210;255211;255212;255213;255214;255215;255216;255217	255207			42	
LFYMIPVFFAFR	0	Unmodified	1549.8156	0.81556404	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.732	91.626	2	5.5534E-08	52246	160513_QHF_FH_JSI9Kac_6	110.78	85.561			0.79291	0.93954	65.235	3	1	Median	0.6578	0.56616	NaN	1	0	Median	0.79291	0.93954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9018	2.0661	NaN	1	1	Median	236780000	122290000	114490000	86658000	53256000	33403000	127940000	62993000	64942000	0	0	0	22186000	6041800	16145000	30452	4180	28817	188787;188788;188789;188790	255218;255219;255220;255221;255222	255219			5	
LFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNK	1	Unmodified	4225.9442	0.94415455	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.31	98.591	3;4	8.1807E-269	58351	160513_QHF_FH_JSI10Kac_6	318.24	303.87			0.8924	1.0694	3.73	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8924	1.0694	3.73	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	458170000	229420000	228740000	0	0	0	458170000	229420000	228740000	0	0	0	0	0	0	30453	1844	28818	188791;188792	255223;255224;255225;255226	255226			4	
LFYSTFATDDR	0	Unmodified	1334.6143	0.61428128	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	5	5.51		3	1						1	1		3	1	58.852	56.349	2	0.00013397	48206	160511_QHF_FH_JSI12i_2	84.213	72.365			0.95009	0.92336	13.785	5	0	Median	1.1815	0.99002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95009	0.92336	18.272	3	0	Median	0.83397	0.8994	NaN	1	0	Median	449260000	221740000	227520000	74532000	34495000	40037000	0	0	0	293270000	141480000	151780000	81459000	45761000	35698000	30454	1341	28819	188793;188794;188795;188796;188797	255227;255228;255229;255230	255228			4	
LFYSTFATDDRK	1	Unmodified	1462.7092	0.70924429	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.22	6.68		4	5					1	8	6	5	4	3	51.454	46.148	2;3	2.6027E-15	25303	160513_QHF_FH_JSI10Kac_6	143.89	110.51			1.0069	0.94171	21.027	17	4	Median	1.2391	0.9908	15.827	5	0	Median	0.80233	0.94171	24.066	5	2	Median	0.97125	0.9425	20.306	4	1	Median	0.85653	0.86318	33.216	3	1	Median	3822900000	1879700000	1943100000	759550000	345260000	414290000	1113700000	576150000	537570000	740840000	327690000	413140000	1208700000	630640000	578110000	30455	1341	28820	188798;188799;188800;188801;188802;188803;188804;188805;188806;188807;188808;188809;188810;188811;188812;188813;188814;188815	255231;255232;255233;255234;255235;255236;255237;255238;255239;255240;255241;255242;255243;255244;255245;255246;255247;255248;255249;255250;255251;255252;255253;255254;255255	255253			25	
LFYTSNIPIILQSALVSNLYVISQMLSAR	0	Oxidation (M)	3269.7734	0.77337146	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		103.66	95.27	3;4	1.2372E-20	54689	160513_QHF_FH_JSI9Kac_6	114.03	108.31			1.1799	0.99902	93.228	3	0	Median	0.57433	0.49061	100.57	2	0	Median	1.1819	1.3939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	594910000	256320000	338590000	377110000	159540000	217570000	201090000	96781000	104310000	16710000	0	16710000	0	0	0	30456	1960	28821	188816;188817;188818;188819	255256;255257;255258;255259	255257		1631	3	
LFYTSNIPIILQSALVSNLYVISQMLSAR	0	Unmodified	3253.7785	0.77845684	1960	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			105.6	98.131	2;3	0	59189	160513_QHF_FH_JSI10Kac_6	385.18	352.82			1.3004	1.3234	28.731	2	0	Median	1.8727	1.6216	NaN	1	0	Median	0.903	1.0801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	670670000	275140000	395520000	243290000	70931000	172360000	427370000	204210000	223160000	0	0	0	0	0	0	30457	1960	28821	188820;188821	255260;255261	255261			2	
LFYVHYIDFNK	1	Unmodified	1457.7343	0.73433683	3919	Q92993	KAT5	Histone acetyltransferase KAT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	3	2	1	76.146	69.559	2;3	1.6532E-10	38084	160513_QHF_FH_JSI10Kac_6	127.3	100.19			0.91207	0.9738	56.313	7	4	Median	1.1196	0.9738	NaN	1	0	Median	0.55072	0.6621	85.432	3	3	Plateau	0.85255	0.8054	40.207	2	1	Median	0.91207	0.96016	NaN	1	0	Median	1898200000	967410000	930770000	349470000	126530000	222940000	1153300000	649260000	504030000	207160000	101610000	105550000	188260000	90009000	98252000	30458	3919	28822	188822;188823;188824;188825;188826;188827;188828;188829	255262;255263;255264;255265;255266;255267;255268;255269;255270	255269			9	
LFYVHYIDFNKR	1	Acetyl (K)	1655.846	0.84601255	3919	Q92993	KAT5	Histone acetyltransferase KAT5	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			77.927	71.861	3	0.0048201	39310	160513_QHF_FH_JSI10Kac_6	56.122	49.083			2.6434	3.0286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6434	3.0286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83080000	20145000	62935000	0	0	0	83080000	20145000	62935000	0	0	0	0	0	0	30459	3919	28823	188830	255271	255271	3002		1	
LFYVLSTLAFSK	1	Unmodified	1387.7751	0.77513901	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	91.805	83.998	2	4.9668E-07	46521	160513_QHF_FH_JSI9Kac_6	130.98	112.67			2.0577	1.9335	158.52	5	5	Median	3.1715	2.6906	NaN	1	1	Median	0.34894	0.40877	264.45	2	2	Median	2.0577	1.9335	NaN	1	1	Median	1.1537	1.2348	NaN	1	1	Median	677780000	331980000	345800000	124300000	23242000	101060000	286910000	196480000	90436000	171240000	62351000	108890000	95319000	49915000	45405000	30460	4530	28824	188831;188832;188833;188834;188835	255272;255273;255274;255275;255276	255273			5	
LFYVPQRPYMTLGTLR	0	Oxidation (M)	1970.0448	0.044788708	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	76.898	68.8	3	0.0027749	36700	160513_QHF_FH_JSI9Kac_6	54.598	40.344			0.83528	0.94408	22.911	3	0	Median	1.588	1.3429	NaN	1	0	Median	0.80217	0.94408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83528	0.87373	NaN	1	0	Median	408300000	188490000	219810000	142220000	45838000	96385000	229140000	121080000	108060000	0	0	0	36943000	21576000	15367000	30461	1304	28825	188836;188837;188838	255277;255278;255279;255280	255277		959	4	
LFYVPQRPYMTLGTLR	0	Unmodified	1954.0499	0.049874086	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	16	0									3	1		1	1	81.993	72.863	3	0.00038461	39621	160513_QHF_FH_JSI9Kac_6	73.022	57.257			1.2197	1.0453	2.6386	3	0	Plateau	1.2197	1.0453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1255	1.0638	NaN	1	0	Median	0.93948	1.01	NaN	1	0	Median	520290000	217580000	302710000	383300000	150660000	232640000	0	0	0	80129000	35932000	44197000	56859000	30984000	25875000	30462	1304	28825	188839;188840;188841	255281	255281			1	
LGAAAADAVTGR	0	Unmodified	1071.5673	0.5672715	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	29.669	28.756	2	3.7707E-05	24397	160511_QHF_FH_JSI11i_2	103.88	68.385			0.7863	0.88544	29.532	4	0	Median	1.7162	1.4863	NaN	1	0	Median	0.74151	0.91892	NaN	1	0	Median	0.83379	0.85319	NaN	1	0	Median	0.68766	0.75908	NaN	1	0	Median	309120000	162760000	146350000	79067000	28134000	50933000	94644000	54790000	39855000	58702000	28626000	30076000	76703000	51214000	25488000	30463	4714	28826	188842;188843;188844;188845	255282;255283;255284;255285	255284			4	
LGAAPEEESAYVAGEK	1	Unmodified	1619.7679	0.76788138	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									4	2	2	2	42.574	41.808	2;3	4.4625E-10	37518	160511_QHF_FH_JSI10i_1	164.11	139.32			0.77711	0.8172	40.541	10	6	Median	1.2523	1.0279	48.828	4	4	Median	0.6933	0.8172	3.0959	2	0	Median	1.0538	1.0393	28.218	2	1	Median	0.48638	0.50959	5.5236	2	1	Median	1336100000	717420000	618720000	402030000	178750000	223280000	274440000	142350000	132090000	341250000	182210000	159040000	318420000	214110000	104310000	30464	5453	28827	188846;188847;188848;188849;188850;188851;188852;188853;188854;188855	255286;255287;255288;255289;255290;255291;255292;255293;255294;255295;255296;255297;255298	255293			13	
LGAASLGAEDPETQVVLINAVK	1	Unmodified	2194.1845	0.18451289	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.18	0.386	9	2								3	3	2	3	90.212	89.781	2;3	8.1866E-141	81486	160511_QHF_FH_JSI10i_1	287.85	268.18			0.85005	0.99082	29.196	11	2	Median	1.6454	1.3655	5.0453	3	0	Plateau	0.85005	0.99702	5.6455	3	0	Plateau	1.0327	0.99548	0.66345	2	0	Median	0.64932	0.66581	4.8566	3	2	Median	841940000	447950000	393980000	129490000	46013000	83482000	228140000	118890000	109260000	210350000	118130000	92215000	273950000	164920000	109030000	30465	5616	28828	188856;188857;188858;188859;188860;188861;188862;188863;188864;188865;188866	255299;255300;255301;255302;255303;255304;255305;255306;255307;255308;255309	255306			11	
LGAASLK	1	Unmodified	658.40138	0.40137537	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	13.931	13.596	2	0.038396	11391	160511_QHF_FH_JSI12i_1	48.174	48.174			0.83356	0.93341	2.5471	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77827	0.91675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89277	0.95038	NaN	1	0	Median	652430000	358040000	294390000	0	0	0	399030000	229700000	169340000	0	0	0	253400000	128340000	125060000	30466	398	28829	188867;188868	255310;255311	255310			2	
LGADAVGMSTVPEVIVAR	0	Oxidation (M)	1799.9451	0.94513424	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	70.872	70.185	2	2.2806E-08	63507	160511_QHF_FH_JSI10i_1	135.58	119.72			0.75579	0.8789	37.071	5	1	Median	1.7877	1.4917	NaN	1	0	Median	0.75579	0.8789	NaN	1	0	Median	0.96973	0.93353	NaN	1	0	Median	0.57952	0.62241	17.353	2	1	Median	145020000	76360000	68655000	27348000	11060000	16288000	41292000	24629000	16663000	33353000	15268000	18086000	43021000	25403000	17618000	30467	771	28830	188869;188870;188871;188872;188873	255312;255313;255314;255315;255316;255317;255318;255319	255317		275	8	
LGADAVGMSTVPEVIVAR	0	Unmodified	1783.9502	0.95021962	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.627	8	5	1							4	3	3	4	83.264	82.617	2;3	2.4779E-81	75028	160511_QHF_FH_JSI10i_1	243.88	226.94			0.94404	1.0478	29.534	14	0	Median	1.6674	1.3852	4.1304	4	0	Median	0.88897	1.0483	0.67233	3	0	Median	1.0637	1.0341	8.8437	3	0	Median	0.62205	0.65098	5.4865	4	0	Median	2453300000	1223100000	1230200000	505980000	188240000	317740000	700140000	371230000	328910000	693700000	328310000	365400000	553460000	335320000	218150000	30468	771	28830	188874;188875;188876;188877;188878;188879;188880;188881;188882;188883;188884;188885;188886;188887	255320;255321;255322;255323;255324;255325;255326;255327;255328;255329;255330;255331;255332;255333;255334;255335;255336;255337;255338;255339;255340;255341;255342;255343;255344;255345;255346;255347	255332			28	
LGADESEEEGRR	0	Unmodified	1346.6062	0.60623578	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0.577	1	4	1							2	2	2		9.9478	9.5546	2;3	0.00072472	7305	160511_QHF_FH_JSI9i_2	88.496	48.494			1.0586	1.0707	14.148	5	1	Median	1.2821	1.0932	23.89	2	1	Median	0.90151	1.0659	14.935	2	0	Median	1.0907	1.0707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	240030000	118970000	121060000	87776000	37824000	49951000	110170000	58902000	51264000	42087000	22244000	19843000	0	0	0	30469	387	28831	188888;188889;188890;188891;188892;188893	255348;255349;255350;255351	255349			4	
LGAFFLER	0	Unmodified	951.5178	0.51780212	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			71.845	70.376	2	0.039691	58996	160511_QHF_FH_JSI10i_3	45.335	24.636			1.124	1.0912	29.091	2	0	Median	1.6522	1.3404	NaN	1	0	Median	0.7646	0.88834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81432000	35466000	45966000	38537000	12946000	25590000	42895000	22519000	20376000	0	0	0	0	0	0	30470	4388	28832	188894;188895	255352	255352			1	
LGAFLWMQR	0	Unmodified	1120.5852	0.58517017	4045	Q96EI5;Q9H3H9	TCEAL4;TCEAL2	Transcription elongation factor A protein-like 4;Transcription elongation factor A protein-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	2	3	73.693	64.861	2;3	1.5723E-16	41714	160513_QHF_FH_JSI10Kac_6	167.25	129.01			0.92776	1.0658	19.804	8	0	Median	1.5344	1.294	NaN	1	0	Median	0.92776	1.0942	1.2475	2	0	Median	1.1827	1.1228	9.8522	2	0	Median	0.85435	0.89709	14.751	3	0	Plateau	2292200000	1188800000	1103400000	127200000	57296000	69908000	1250100000	650610000	599490000	451220000	216460000	234760000	463720000	264420000	199290000	30471	4045	28833	188896;188897;188898;188899;188900;188901;188902;188903	255353;255354;255355;255356;255357;255358;255359;255360;255361	255360			9	
LGAFQAQEK	1	Unmodified	990.51345	0.51344502	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	25.316	24.852	2	0.045356	21526	160511_QHF_FH_JSI10i_2	45.161	22.013			0.34987	0.39442	2.9286	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32425	0.40267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37752	0.38634	NaN	1	1	Median	194980000	134070000	60909000	0	0	0	94787000	66662000	28124000	0	0	0	100190000	67405000	32784000	30472	1669	28834	188904;188905	255362;255363	255362			2	
LGAGGGSPEK	1	Unmodified	871.43995	0.43994572	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.6696	8.3188	2	0.0057423	5830	160511_QHF_FH_JSI9i_1	63.184	34.672			0.89826	0.9541	35.891	4	1	Median	1.908	1.5855	NaN	1	1	Median	0.86712	1.0137	NaN	1	0	Median	0.93052	0.89801	NaN	1	0	Median	0.64386	0.66818	NaN	1	0	Median	529870000	278020000	251850000	115450000	45993000	69454000	147700000	78136000	69559000	147790000	75221000	72568000	118940000	78667000	40272000	30473	5434	28835	188906;188907;188908;188909	255364;255365;255366;255367	255367			4	
LGAGPDGVEEIK	1	Unmodified	1183.6085	0.60846762	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.892	40.255	2	7.4633E-05	35621	160511_QHF_FH_JSI9i_1	94.465	76.154			0.79749	0.72232	32.239	4	2	Median	0.73675	0.61291	NaN	1	0	Median	0.88333	1.0223	NaN	1	0	Median	0.86325	0.85125	NaN	1	1	Median	0.47457	0.49861	NaN	1	1	Median	624410000	316670000	307740000	116140000	56327000	59811000	167320000	87650000	79671000	195210000	91779000	103430000	145750000	80917000	64828000	30474	1755	28836	188910;188911;188912;188913	255368;255369;255370;255371;255372;255373	255372			6	
LGAGPGDAGEVQAHPFFR	0	Unmodified	1824.8907	0.89073091	1229	P23443	RPS6KB1	Ribosomal protein S6 kinase beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			57.615	56.072	3	0.0011611	46864	160511_QHF_FH_JSI10i_3	40.856	33.075			1.263	1.2385	33.335	2	2	Median	1.9095	1.5677	NaN	1	1	Median	0.83533	0.97842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77693000	34986000	42707000	20544000	8299100	12244000	57149000	26687000	30462000	0	0	0	0	0	0	30475	1229	28837	188914;188915	255374;255375	255374			2	
LGAGYGLLSEAELEVVPIIAK	1	Unmodified	2141.1984	0.19837204	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.2	102.14	3	0.044647	90715	160511_QHF_FH_JSI10i_2	23.449	18.644			0.87046	1.0714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87046	1.0714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33809000	17003000	16806000	0	0	0	33809000	17003000	16806000	0	0	0	0	0	0	30476	2690	28838	188916	255376	255376			1	
LGAGYPMGPFELLDYVGLDTTK	1	Unmodified	2356.1661	0.16608564	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	102.8	102.68	2	9.6226E-58	90513	160511_QHF_FH_JSI11i_2	248.23	222.58			1.0215	1.0299	35.24	5	4	Median	2.028	1.8279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0487	1.033	0.41972	2	2	Median	0.68644	0.77201	3.8071	2	2	Median	517400000	258980000	258420000	47883000	14994000	32890000	0	0	0	292450000	140110000	152340000	177070000	103880000	73185000	30477	2770	28839	188917;188918;188919;188920;188921	255377;255378;255379;255380;255381	255381			5	
LGAHEGLSPTPFMNSNLMGK	1	Unmodified	2100.0132	0.013230583	4263	Q99081	TCF12	Transcription factor 12	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			73.724	72.284	3	0.056745	60515	160511_QHF_FH_JSI10i_3	20.077	15.21			0.82712	0.96191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82712	0.96191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10428000	7166300	3262000	0	0	0	10428000	7166300	3262000	0	0	0	0	0	0	30478	4263	28840	188922	255382	255382			1	
LGALGGAR	0	Unmodified	713.41842	0.41842242	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	9.8538	9.4474	2	0.015807	7189	160511_QHF_FH_JSI10i_1	50.12	50.12			0.85384	0.99002	4.1578	5	0	Median	1.2469	1.0349	NaN	1	0	Median	0.83744	1.0064	2.3201	2	0	Median	1.0193	0.98138	NaN	1	0	Median	0.84037	0.93083	NaN	1	0	Median	6172700000	3119700000	3053000000	1560600000	692570000	867990000	2184200000	1146300000	1038000000	574750000	301070000	273680000	1853100000	979770000	873380000	30479	4262	28841	188923;188924;188925;188926;188927	255383;255384	255383			2	
LGALQGDPEALTLYR	0	Unmodified	1615.857	0.85697116	5199	Q9P253	VPS18	Vacuolar protein sorting-associated protein 18 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		76.291	75.763	2	0.00030265	68513	160511_QHF_FH_JSI10i_1	94.801	59.387			1.2051	1.3652	17.868	5	1	Median	2.0658	1.8013	NaN	1	0	Median	1.1516	1.3681	0.2947	2	0	Median	1.1994	1.1681	4.9108	2	1	Median	NaN	NaN	NaN	0	0	Median	120620000	57199000	63425000	19135000	7050300	12085000	48276000	27646000	20631000	53212000	22503000	30709000	0	0	0	30480	5199	28842	188928;188929;188930;188931;188932	255385;255386;255387;255388;255389;255390	255387			5	
LGALSGAAALGFASYGAHGAQFPDAYGK	1	Unmodified	2667.3082	0.30815028	3510	Q8N2U0	TMEM256	Transmembrane protein 256	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	1	3	3	2	89.851	86.731	3;4	1.4375E-49	81194	160511_QHF_FH_JSI11i_3	186.3	179.84			1.0569	1.0655	39.243	7	4	Median	1.3983	1.1362	NaN	1	0	Median	0.85592	0.96804	13.562	2	1	Median	1.0569	1.0043	10.298	3	2	Median	2.8557	2.815	NaN	1	1	Median	660880000	343840000	317040000	79031000	30207000	48824000	149980000	78319000	71658000	398990000	224780000	174210000	32879000	10533000	22345000	30481	3510	28843	188933;188934;188935;188936;188937;188938;188939;188940;188941	255391;255392;255393;255394;255395;255396;255397;255398;255399;255400;255401;255402;255403;255404;255405	255392			15	
LGAMSAAPSQPNSQIR	0	Unmodified	1626.8148	0.81478877	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	39.391	38.265	2	2.9219E-05	32696	160511_QHF_FH_JSI12i_2	112.15	94.283			0.61773	0.69749	53.921	3	3	Median	1.9622	1.7357	NaN	1	1	Median	0.5872	0.69749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61773	0.6681	NaN	1	1	Median	47873000	30083000	17790000	16306000	5218500	11088000	15490000	11081000	4409000	0	0	0	16077000	13784000	2292900	30482	4413	28844	188942;188943;188944	255406;255407;255408	255406			3	
LGANSLLDLVVFGR	0	Unmodified	1472.8351	0.83511351	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	4	4	4	3	100.32	97.194	2;3	5.3588E-81	52571	160513_QHF_FH_JSI10Kac_6	234.17	215.42			1.01	1.0132	30.418	14	0	Median	1.5677	1.2883	12.029	4	0	Median	0.86132	1.0015	3.7633	3	0	Plateau	1.098	1.0614	12.963	4	0	Median	0.59985	0.60783	9.4658	3	0	Median	6451800000	3392600000	3059200000	1185900000	463060000	722850000	1991700000	1095200000	896440000	2065300000	1051400000	1013900000	1209000000	782940000	426020000	30483	1367	28845	188945;188946;188947;188948;188949;188950;188951;188952;188953;188954;188955;188956;188957;188958;188959	255409;255410;255411;255412;255413;255414;255415;255416;255417;255418;255419;255420;255421;255422;255423;255424;255425;255426;255427;255428	255427			20	
LGAPAAGGEEEWGQQQR	0	Unmodified	1782.8285	0.82852458	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	2	3	2	41.487	40.815	2;3	6.3377E-22	36671	160511_QHF_FH_JSI10i_1	172.09	153.83			1.306	1.324	16.848	6	1	Median	2.3437	1.9058	NaN	1	1	Median	1.1786	1.4099	8.4224	2	0	Median	1.382	1.3189	0.08813	2	0	Median	1.1483	1.1688	NaN	1	0	Median	424630000	200410000	224220000	26783000	9227800	17556000	143370000	71105000	72268000	163390000	69632000	93758000	91083000	50442000	40641000	30484	637	28846	188960;188961;188962;188963;188964;188965;188966;188967	255429;255430;255431;255432;255433;255434;255435	255433			7	
LGAPALTSR	0	Unmodified	884.50797	0.50796571	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			32.606	31.471	2	0.0025352	25552	160511_QHF_FH_JSI9i_3	64.265	17.219			1.9408	1.587	18.226	3	0	Median	1.9644	1.6284	3.648	2	0	Median	0.96404	1.1914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1604800000	674400000	930410000	1056500000	393740000	662720000	548350000	280660000	267680000	0	0	0	0	0	0	30485	1415	28847	188968;188969;188970	255436;255437;255438	255436			3	
LGAPENSGISTLER	0	Unmodified	1442.7365	0.73652168	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.696	46.714	2	0.0086318	40146	160511_QHF_FH_JSI11i_2	50.207	40.254			0.95278	1.0541	29.899	4	1	Median	1.5719	1.3262	NaN	1	0	Median	0.93526	1.1537	NaN	1	1	Median	0.97063	0.96319	NaN	1	0	Median	0.58618	0.66476	NaN	1	0	Median	197410000	94850000	102560000	35489000	12964000	22525000	47279000	23854000	23425000	65948000	27889000	38059000	48698000	30143000	18555000	30486	5627	28848	188971;188972;188973;188974	255439;255440	255439			2	
LGAPLPFR	0	Unmodified	869.51232	0.51232281	3543	Q8N5I2	ARRDC1	Arrestin domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	59.763	59.168	2	0.0045358	49648	160511_QHF_FH_JSI10i_3	68.398	43.4			1.1521	1.1784	27.84	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98141	1.1289	NaN	1	0	Median	1.3526	1.2159	NaN	1	0	Median	0.71425	0.72649	NaN	1	1	Median	101680000	54880000	46797000	0	0	0	33531000	15602000	17929000	34335000	17360000	16974000	33812000	21918000	11893000	30487	3543	28849	188975;188976;188977	255441;255442	255441			2	
LGAPQTHLGLK	1	Unmodified	1133.6557	0.65569258	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.29		6	5						5	3	5	5	3	40.121	36.691	2;3	2.8965E-06	30500	160511_QHF_FH_JSI10i_3	115.57	99.371			0.97135	1.0879	29.872	16	3	Median	1.7696	1.5135	5.7215	3	0	Plateau	0.89885	1.1048	7.2727	5	1	Median	1.0793	1.0289	20.616	5	2	Median	0.62219	0.64479	16.193	3	0	Median	4549000000	2581500000	1967500000	248870000	81728000	167140000	1497500000	722640000	774910000	452090000	224960000	227130000	2350500000	1552200000	798310000	30488	3998	28850	188978;188979;188980;188981;188982;188983;188984;188985;188986;188987;188988;188989;188990;188991;188992;188993	255443;255444;255445;255446;255447;255448;255449;255450;255451;255452;255453;255454;255455;255456;255457;255458;255459;255460	255447			18	
LGAPQTHLGLKNMIK	2	Acetyl (K)	1661.9287	0.92869632	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	73.48	63.948	3	2.7988E-10	34699	160513_QHF_FH_JSI11Kac_6	116.78	94.683			0.55058	0.56283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55058	0.56283	NaN	1	0	Median	19988000	13581000	6407700	0	0	0	0	0	0	0	0	0	19988000	13581000	6407700	30489	3998	28851	188994;188995	255461;255462	255461	3024		2	
LGAQALLGAAK	1	Unmodified	1011.6077	0.60767975	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	54.067	53.277	2	2.6422E-07	45928	160511_QHF_FH_JSI11i_2	121.05	96.154			0.88721	0.90074	29.364	11	0	Median	1.5914	1.3097	24.622	2	0	Median	0.94562	1.1055	16.778	3	0	Plateau	0.89232	1.0331	10.152	3	0	Plateau	0.61549	0.63141	12.521	3	0	Median	4031800000	2029000000	2002800000	410460000	142890000	267570000	842640000	430440000	412210000	1215600000	593120000	622500000	1563100000	862520000	700560000	30490	1394	28852	188996;188997;188998;188999;189000;189001;189002;189003;189004;189005;189006	255463;255464;255465;255466;255467;255468;255469;255470;255471;255472;255473;255474;255475;255476;255477;255478	255473			16	
LGAQALLGAAKMLLHSEQHPGQLK	2	Acetyl (K)	2552.3897	0.38971184	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		93.23	85.679	4	8.4467E-20	47709	160513_QHF_FH_JSI11Kac_6	118.67	105.74			1.0621	0.99767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0621	0.99767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	269730000	203110000	66627000	0	0	0	126550000	126550000	0	143180000	76558000	66627000	0	0	0	30491	1394	28853	189007;189008	255479;255480	255479	1348		2	
LGAQLADLHLDNK	1	Unmodified	1406.7518	0.75177781	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	57.407	56.81	2;3	5.2899E-05	48870	160511_QHF_FH_JSI12i_3	116.03	95.722			0.82389	0.75334	36.214	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0266	1.252	NaN	1	1	Median	0.87058	0.81751	11.56	2	1	Median	0.50398	0.53665	9.8666	2	1	Median	631560000	353670000	277890000	0	0	0	265570000	111620000	153950000	201910000	125000000	76910000	164080000	117050000	47033000	30492	4817	28854	189009;189010;189011;189012;189013	255481;255482;255483;255484;255485;255486	255486			5	
LGAQLADLHLDNKK	2	Unmodified	1534.8467	0.84674083	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				49.699	48.095	3	0.034517	39353	160511_QHF_FH_JSI9i_3	25.609	14.169			1.2585	1.0345	NaN	1	0	Median	1.2585	1.0345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20920000	12018000	8902600	20920000	12018000	8902600	0	0	0	0	0	0	0	0	0	30493	4817	28855	189014	255487	255487			1	
LGASALDSIQEFR	0	Unmodified	1405.7201	0.72014333	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	71.79	71.283	2	0.00031523	63613	160511_QHF_FH_JSI11i_3	72.887	31.487			0.74188	0.75955	26.287	5	2	Median	0.80635	0.70247	NaN	1	0	Median	0.64698	0.79834	NaN	1	0	Median	0.90067	0.87815	48.932	2	1	Median	0.74188	0.75955	NaN	1	1	Median	204940000	120670000	84264000	33679000	17715000	15964000	59202000	31774000	27428000	86235000	55521000	30714000	25820000	15663000	10157000	30494	3452	28856	189015;189016;189017;189018;189019	255488;255489;255490;255491;255492	255488			5	
LGASGLR	0	Unmodified	672.39187	0.39187332	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.816	2	2	2							3	1	2		10.135	9.7382	2	0.045601	7328	160511_QHF_FH_JSI11i_3	44.611	44.611			1.0651	1.0724	23.324	6	0	Median	1.5184	1.3063	29.077	3	0	Median	0.89454	1.0602	NaN	1	0	Median	0.93946	0.92365	22.75	2	0	Median	NaN	NaN	NaN	0	0	Median	3327500000	1752800000	1574600000	1040500000	479740000	560740000	481020000	286860000	194160000	1806000000	986250000	819720000	0	0	0	30495	1257	28857	189020;189021;189022;189023;189024;189025	255493;255494;255495;255496;255497	255493			5	
LGASNSPGQPNSVK	1	Unmodified	1354.6841	0.68409218	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	17.705	17.166	2	0.00013437	14445	160511_QHF_FH_JSI11i_1	121.02	87.759			0.69137	0.7333	30.546	4	0	Linear	1.2256	1.0229	NaN	1	0	Median	0.72253	0.87499	NaN	1	0	Median	1.317	1.2574	NaN	1	0	Median	0.60007	0.60987	NaN	1	0	Median	311720000	176920000	134800000	78047000	39907000	38139000	89044000	57409000	31636000	62152000	27468000	34684000	82475000	52137000	30338000	30496	1679	28858	189026;189027;189028;189029;189030;189031	255498;255499;255500;255501;255502;255503;255504;255505	255498			8	
LGASPLHVDLATLR	0	Unmodified	1461.8304	0.83036248	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	70.715	69.93	2;3	4.9507E-07	60372	160511_QHF_FH_JSI12i_3	130.24	108			1.2025	1.1401	32.234	7	2	Median	1.8575	1.564	0.24965	2	0	Median	0.89383	1.045	6.6357	2	1	Median	1.323	1.291	17.577	2	1	Median	0.61762	0.6341	NaN	1	0	Median	870730000	423630000	447100000	138650000	48453000	90194000	105640000	48433000	57205000	321310000	142170000	179140000	305140000	184580000	120560000	30497	2721	28859	189032;189033;189034;189035;189036;189037;189038	255506;255507;255508;255509;255510;255511;255512;255513;255514;255515;255516	255515			11	
LGATIDVEHSHVR	0	Unmodified	1432.7423	0.74227576	3228	Q7L523	RRAGA	Ras-related GTP-binding protein A	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		29.242	29.242	3	0.0065921	25216	160511_QHF_FH_JSI11i_3	48.704	39.975			0.72838	0.68344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72838	0.68344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66342000	46041000	20301000	0	0	0	0	0	0	66342000	46041000	20301000	0	0	0	30498	3228	28860	189039;189040	255517;255518	255517			2	
LGATLANGNQSEEAVAAYRR	0	Unmodified	2090.0505	0.050479026	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				45.77	44.161	3	0.023247	36075	160511_QHF_FH_JSI9i_3	31.111	18.074			1.597	1.289	NaN	1	1	Median	1.597	1.289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25195000	9683000	15512000	25195000	9683000	15512000	0	0	0	0	0	0	0	0	0	30499	1708	28861	189041	255519;255520	255520			2	
LGAVDESLSEETQK	1	Unmodified	1504.7257	0.72568222	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				1	4	2	2	44.917	42.392	2	3.4741E-06	37673	160511_QHF_FH_JSI9i_1	128.28	99.556			0.77234	0.87615	51.523	9	9	Median	1.4901	1.2246	NaN	1	1	Median	0.87159	0.99129	43.589	4	4	Median	0.9991	0.9818	70.9	2	2	Median	0.51076	0.52954	60.172	2	2	Median	1052200000	567080000	485140000	109630000	46273000	63356000	358510000	199930000	158580000	348670000	187630000	161050000	235400000	133250000	102150000	30500	4109	28862	189042;189043;189044;189045;189046;189047;189048;189049;189050	255521;255522;255523;255524;255525;255526;255527;255528;255529	255527			9	
LGAVFNQVAFPLQYTPR	0	Unmodified	1920.0258	0.025767826	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.93		6	8						5	4	7	4	4	96.842	94.6	2;3	3.0613E-128	44767	160513_QHF_FH_JSI9Kac_6	262.07	201.82			0.976	1.0046	31.172	18	5	Median	1.7975	1.4811	20.297	4	0	Median	0.81718	0.95044	11.619	7	3	Median	1.1133	1.0447	7.4238	4	0	Median	0.55112	0.5807	19.736	3	2	Median	893130000	456730000	436400000	186180000	75501000	110680000	457090000	251920000	205170000	181030000	86399000	94632000	68832000	42905000	25928000	30501	2665	28863	189051;189052;189053;189054;189055;189056;189057;189058;189059;189060;189061;189062;189063;189064;189065;189066;189067;189068;189069	255530;255531;255532;255533;255534;255535;255536;255537;255538;255539;255540;255541;255542;255543;255544;255545;255546;255547;255548;255549;255550;255551;255552;255553;255554;255555;255556	255549			26	
LGAVGGSGFK	1	Unmodified	891.48142	0.48141661	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	28.923	28.896	2	0.0034849	24907	160511_QHF_FH_JSI11i_3	56.434	31.615			0.97421	0.96641	19.643	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1631	1.1104	NaN	1	0	Median	0.81602	0.84108	NaN	1	0	Median	497940000	271110000	226820000	0	0	0	0	0	0	186250000	86936000	99316000	311680000	184180000	127500000	30502	648	28864	189070;189071	255557;255558;255559	255557			3	
LGAVYDVSHYNALLK	1	Unmodified	1661.8777	0.8777066	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		7	7						7	4	8	5	4	73.653	69.94	2;3	4.3826E-63	36799	160513_QHF_FH_JSI11Kac_6	170.11	146.18			0.83242	0.91633	46.789	17	5	Median	1.4365	1.2167	8.2027	3	1	Median	0.79679	0.94994	25.377	6	3	Median	0.89917	0.86599	44.839	5	0	Median	0.48112	0.53569	49.345	3	1	Median	3101900000	1488500000	1613300000	718960000	256700000	462270000	1062100000	553760000	508370000	1162600000	565820000	596780000	158190000	112270000	45918000	30503	1544	28865	189072;189073;189074;189075;189076;189077;189078;189079;189080;189081;189082;189083;189084;189085;189086;189087;189088;189089;189090;189091;189092	255560;255561;255562;255563;255564;255565;255566;255567;255568;255569;255570;255571;255572;255573;255574;255575;255576;255577;255578;255579;255580;255581;255582;255583;255584;255585;255586;255587;255588;255589;255590	255569			31	
LGAYYVTGK	1	Unmodified	970.51238	0.51238239	3991	Q96BR5	COA7	Cytochrome c oxidase assembly factor 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		10.7	6.13		1						2			1	2		41.994	35.053	2	0.014779	30167	160511_QHF_FH_JSI11i_2	55.112	35.475			0.88305	0.85079	32.143	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71671	0.83687	NaN	1	0	Median	1.1376	1.1191	38.771	2	1	Median	NaN	NaN	NaN	0	0	Median	149310000	65486000	83827000	0	0	0	3405300	1964300	1441100	145910000	63521000	82386000	0	0	0	30504	3991	28866	189093;189094;189095	255591;255592	255591			2	
LGCEVLGVSVDSQFTHLAWINTPR	0	Unmodified	2698.3537	0.35372026	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.113	84.392	3	1.3922E-94	47905	160513_QHF_FH_JSI10Kac_6	230.86	217.8			0.61728	0.73068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61728	0.73068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203570000	129420000	74159000	0	0	0	203570000	129420000	74159000	0	0	0	0	0	0	30505	1390	28867	189096	255593	255593			1	
LGCEVLGVSVDSQFTHLAWINTPRK	1	Unmodified	2826.4487	0.44868328	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			85.582	79.881	4	4.0024E-22	44775	160513_QHF_FH_JSI10Kac_6	119.76	106.97			0.80421	0.95563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80421	0.95563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137400000	66847000	70556000	0	0	0	137400000	66847000	70556000	0	0	0	0	0	0	30506	1390	28868	189097	255594	255594			1	
LGCQDAFPEVYDK	1	Unmodified	1540.6868	0.68679429	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		58.202	57.794	2	7.8606E-05	52455	160511_QHF_FH_JSI11i_1	114.72	96.857			1.135	1.2109	35.661	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3294	1.5582	NaN	1	0	Median	0.96893	0.94099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162570000	75316000	87258000	0	0	0	72760000	31386000	41374000	89813000	43930000	45883000	0	0	0	30507	2664	28869	189098;189099	255595;255596;255597	255596			3	
LGDAVEQGVINNTVLGYFIGR	0	Unmodified	2234.1695	0.16953153	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	11.3	6.6		1							2		1	1	1	98.401	92.099	3	2.5339E-13	49572	160513_QHF_FH_JSI11Kac_6	112.44	96.846			1.0183	0.66352	34.92	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0183	1.2356	NaN	1	1	Median	1.0462	0.98496	NaN	1	0	Median	0.57862	0.62258	NaN	1	0	Median	522190000	274530000	247660000	0	0	0	243040000	131590000	111460000	137360000	57828000	79531000	141790000	85113000	56675000	30508	1519	28870	189100;189101;189102	255598;255599	255598			2	
LGDAVIWGTGQLFQAQQDLLHR	0	Unmodified	2465.2815	0.28154159	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.417	85.697	3	4.2931E-10	48893	160513_QHF_FH_JSI10Kac_6	108.4	87.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30509	2303	28871	189103	255600	255600			1	
LGDDEVR	0	Unmodified	802.3821	0.38209649	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		12.136	11.731	2	0.019031	9498	160511_QHF_FH_JSI10i_1	58.981	22.394			1.0283	0.9894	17.737	3	0	Median	1.5081	1.2229	NaN	1	0	Median	0.72557	0.85972	NaN	1	0	Median	1.0283	0.9894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1305400000	619680000	685690000	395260000	153340000	241920000	409270000	236810000	172450000	500840000	229530000	271310000	0	0	0	30510	2536	28872	189104;189105;189106	255601;255602	255602			2	
LGDDEVRTDLK	1	Unmodified	1259.6357	0.635745	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	31.011	30.189	2;3	0.00063325	25326	160511_QHF_FH_JSI12i_2	87.913	40.716			0.96253	1.0308	38.953	9	0	Median	1.3029	1.0908	24.282	2	0	Median	0.96032	1.1561	0.83799	2	0	Median	1.1668	1.1699	17.912	2	0	Median	0.77258	0.8698	46.368	3	0	Plateau	1436200000	733810000	702370000	185950000	82517000	103430000	381820000	175690000	206130000	403030000	209300000	193740000	465370000	266300000	199060000	30511	2536	28873	189107;189108;189109;189110;189111;189112;189113;189114;189115;189116	255603;255604;255605;255606;255607;255608;255609;255610;255611	255605			9	
LGDEDEEIDGDTNK	1	Unmodified	1548.6427	0.64274045	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	27.825	27.347	2	1.1649E-29	24271	160511_QHF_FH_JSI12i_1	218.75	206.14			0.9421	1.036	26.454	6	4	Median	1.3318	1.0993	NaN	1	0	Median	0.92796	1.1028	17.226	2	2	Median	0.97308	0.95215	51.543	2	2	Median	0.83703	0.86227	NaN	1	0	Median	471620000	223840000	247780000	75785000	30433000	45352000	170160000	83441000	86723000	167250000	75177000	92069000	58424000	34788000	23636000	30512	940	28874	189117;189118;189119;189120;189121;189122	255612;255613;255614;255615;255616;255617;255618;255619	255615			8	
LGDGLFLQCCR	0	Unmodified	1337.622	0.62202597	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	61.225	61.087	2	0.0125	52648	160511_QHF_FH_JSI12i_3	54.608	45.745			0.98325	0.96605	2.3853	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0217	0.94989	NaN	1	1	Median	0.94627	0.98248	NaN	1	1	Median	77137000	41163000	35973000	0	0	0	0	0	0	38449000	21951000	16498000	38687000	19212000	19476000	30513	1738	28875	189123;189124	255620;255621	255621			2	
LGDGVDKDEAK	2	Unmodified	1145.5564	0.55643205	3991	Q96BR5	COA7	Cytochrome c oxidase assembly factor 7	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				11.54	10.691	2	0.03543	8191	160511_QHF_FH_JSI9i_1	74.162	18.595			1.4913	1.2181	NaN	1	1	Median	1.4913	1.2181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21852000	8645400	13207000	21852000	8645400	13207000	0	0	0	0	0	0	0	0	0	30514	3991	28876	189125	255622	255622			1	
LGDHQSPATPAFK	1	Unmodified	1367.6834	0.68336389	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	28.241	27.836	2;3	6.2523E-07	23169	160511_QHF_FH_JSI12i_3	132.78	113.68			1.1317	1.0707	39.196	6	3	Median	1.6045	1.3646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1317	1.0707	9.3269	2	1	Median	0.67276	0.68804	55.673	3	1	Median	656730000	363670000	293060000	7308800	1407400	5901400	0	0	0	231860000	103480000	128370000	417560000	258780000	158790000	30515	3736	28877	189126;189127;189128;189129;189130;189131;189132	255623;255624;255625;255626;255627;255628;255629;255630;255631	255629			9	
LGDLGAIDEK	1	Unmodified	1029.5342	0.53424004	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.616	44.936	2	8.6079E-05	40584	160511_QHF_FH_JSI10i_1	86.18	61.257			0.99433	0.97576	5.2109	3	0	Median	1.1977	0.97905	NaN	1	0	Median	0.772	0.89309	NaN	1	0	Median	0.99433	0.97576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	437610000	242280000	195340000	81080000	41142000	39937000	166090000	95963000	70125000	190450000	105170000	85276000	0	0	0	30516	4989	28878	189133;189134;189135	255632;255633;255634;255635;255636;255637	255635			6	
LGDLNYLIYVFPDRPK	1	Unmodified	1922.0302	0.030184501	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	91.04	81.8	3	5.3643E-08	45821	160513_QHF_FH_JSI11Kac_6	117.67	91.842			0.78142	0.73965	27.704	4	2	Median	1.0303	0.88004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1345	1.0831	NaN	1	0	Median	0.57954	0.61831	0.76124	2	2	Median	445760000	233030000	212730000	89813000	47417000	42396000	0	0	0	243540000	116420000	127120000	112410000	69198000	43209000	30517	1750	28879	189136;189137;189138;189139	255638;255639;255640;255641;255642;255643	255638			6	
LGDLQADSEESQR	0	Unmodified	1446.6587	0.65866529	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			26.195	25.892	2	0.0041151	22829	160511_QHF_FH_JSI10i_1	55.452	37.393			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30518	3858	28880	189140	255644	255644			1	
LGDLVWGK	1	Unmodified	886.49125	0.49125301	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.355	57.422	2	0.021969	49234	160511_QHF_FH_JSI12i_2	44.395	27.009			1.0694	1.1816	37.524	4	0	Median	1.7287	1.532	NaN	1	0	Median	0.88509	1.0744	NaN	1	0	Median	1.292	1.2995	NaN	1	0	Median	0.60017	0.64481	NaN	1	0	Median	222570000	111100000	111480000	36640000	19734000	16906000	55223000	34049000	21174000	86137000	34443000	51694000	44574000	22870000	21704000	30519	2827	28881	189141;189142;189143;189144	255645;255646;255647;255648	255645			4	
LGDLYEEEMR	0	Unmodified	1253.5598	0.55980286	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.317	47.333	2	2.2417E-06	40689	160511_QHF_FH_JSI11i_2	111.61	108.6			0.74223	0.83682	26.506	4	0	Median	1.3383	1.1388	NaN	1	0	Median	0.73746	0.91434	NaN	1	0	Median	0.74703	0.76588	NaN	1	0	Median	0.56519	0.60979	NaN	1	0	Median	348860000	191400000	157460000	60423000	31873000	28549000	69579000	37842000	31736000	137440000	66575000	70870000	81415000	55115000	26300000	30520	913	28882	189145;189146;189147;189148	255649;255650;255651;255652;255653;255654;255655	255652			7	
LGDPAEYAHLVQAIIENPFLNGEVIR	0	Unmodified	2877.5025	0.50249299	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		5	2						2	3	1	3	2	102.41	100.32	3;4	5.6094E-34	89100	160511_QHF_FH_JSI12i_2	149.73	139.11			1.1948	1.2182	19.669	9	1	Median	1.7873	1.4989	11.989	3	0	Median	1.0449	1.2614	NaN	1	0	Median	1.1233	1.1275	3.9104	3	0	Plateau	0.91495	0.95693	28.613	2	1	Median	1253100000	588560000	664590000	370560000	129750000	240810000	120310000	74578000	45728000	619970000	281230000	338740000	142320000	103000000	39315000	30521	4304	28883	189149;189150;189151;189152;189153;189154;189155;189156;189157	255656;255657;255658;255659;255660;255661;255662;255663	255657			8	
LGDPLEAFPVFK	1	Unmodified	1331.7125	0.71253876	3334	Q86UY6	NAA40	N-alpha-acetyltransferase 40	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		100.35	100.24	2	0.0017986	87996	160511_QHF_FH_JSI11i_2	59.908	47.861			1.0045	0.91519	3.6984	2	0	Median	1.0239	0.89156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98546	0.93944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21294000	10394000	10899000	6032400	2894500	3138000	0	0	0	15261000	7500000	7761200	0	0	0	30522	3334	28884	189158;189159	255664	255664			1	
LGDSSGPALK	1	Unmodified	943.49746	0.4974606	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.456	21.922	2	0.0095702	19354	160511_QHF_FH_JSI12i_1	48.794	19.645			0.98312	1.0661	37.52	4	0	Median	1.7322	1.4265	NaN	1	0	Median	0.84796	1.019	NaN	1	0	Median	1.1398	1.1153	NaN	1	0	Median	0.55003	0.58662	NaN	1	0	Median	329830000	176670000	153160000	71223000	27313000	43910000	81856000	43111000	38746000	83513000	47108000	36405000	93242000	59140000	34102000	30523	5298	28885	189160;189161;189162;189163	255665	255665			1	
LGDSSLSRK	1	Unmodified	961.51926	0.51925868	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		10.703	10.255	2;3	0.0007428	7892	160511_QHF_FH_JSI10i_3	53.756	31.115			0.92519	1.0258	14.171	6	0	Median	1.4245	1.1615	13.016	2	0	Median	0.88554	1.0258	1.6309	2	0	Median	0.92519	0.87123	0.081493	2	0	Median	NaN	NaN	NaN	0	0	Median	784150000	382300000	401850000	272500000	111140000	161360000	324180000	178820000	145350000	187470000	92333000	95137000	0	0	0	30524	2502	28886	189164;189165;189166;189167;189168;189169	255666;255667;255668;255669;255670;255671;255672	255669			7	
LGDTALHAAAWK	1	Unmodified	1252.6564	0.65642086	3898	Q92882	OSTF1	Osteoclast-stimulating factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.71	0.452		2	5							1		3	3	42.433	42.322	2;3	2.2957E-06	37247	160511_QHF_FH_JSI11i_3	125.57	107.13			0.87387	0.86356	26.283	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0836	1.0277	12.026	2	1	Median	0.66837	0.69135	18.865	2	2	Median	964710000	384080000	580630000	0	0	0	0	0	0	405510000	148590000	256930000	559200000	235490000	323710000	30525	3898	28887	189170;189171;189172;189173;189174;189175;189176	255673;255674;255675;255676;255677;255678;255679;255680	255674			8	
LGDTPGVSYSDIAAR	0	Unmodified	1520.7471	0.74708636	4667	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								2	1	1		53.717	53.053	2	0.00019263	47103	160511_QHF_FH_JSI9i_1	89.301	74.881			1.0593	1.0032	21.453	3	1	Median	1.4111	1.1653	NaN	1	0	Median	0.65524	0.76329	NaN	1	0	Median	1.0593	1.0032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	150590000	67540000	83050000	46358000	15501000	30857000	41499000	19062000	22436000	62733000	32977000	29756000	0	0	0	30526	4667	28888	189177;189178;189179;189180	255681;255682;255683;255684	255683			4	
LGDTYPSISNAR	0	Unmodified	1292.6361	0.63607935	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		39.021	38.292	2	7.1975E-05	32858	160511_QHF_FH_JSI11i_2	105.98	73.967			1.2066	1.3364	12.582	4	4	Median	1.698	1.4827	NaN	1	1	Median	1.204	1.4822	NaN	1	1	Median	1.1921	1.1927	1.4389	2	2	Median	NaN	NaN	NaN	0	0	Median	274320000	110720000	163610000	57350000	22745000	34605000	58915000	23574000	35341000	158060000	64399000	93659000	0	0	0	30527	4715	28889	189181;189182;189183;189184	255685;255686;255687;255688	255686			4	
LGDVGMAELCPGLLHPSSR	0	Unmodified	2007.987	0.98701583	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	76.627	76.096	2;3	4.0939E-16	66041	160511_QHF_FH_JSI12i_3	135.18	126.13			1.0039	1.0593	31.307	6	3	Median	1.8283	1.5497	NaN	1	0	Median	1.1166	1.3276	21.257	2	0	Median	0.97803	0.90717	11.25	2	2	Median	0.71089	0.72763	NaN	1	1	Median	778470000	400660000	377810000	71089000	23558000	47531000	176710000	83275000	93430000	350650000	185090000	165560000	180030000	108740000	71289000	30528	1029	28890	189185;189186;189187;189188;189189;189190;189191	255689;255690;255691;255692;255693;255694	255693			6	
LGDVISIQPCPDVK	1	Unmodified	1539.7967	0.79667909	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	3	1	66.151	65.553	2;3	5.4678E-30	58205	160511_QHF_FH_JSI9i_1	191.52	142.72			1.1454	1.1514	20.511	7	3	Median	1.8274	1.4818	16.827	2	0	Median	0.97917	1.1888	8.4743	2	2	Median	1.1544	1.1277	2.941	2	1	Median	0.83158	0.84893	NaN	1	0	Median	1582700000	758340000	824390000	243790000	81559000	162230000	573300000	298990000	274310000	653150000	312510000	340640000	112490000	65278000	47215000	30529	1846	28891	189192;189193;189194;189195;189196;189197;189198;189199	255695;255696;255697;255698;255699;255700;255701;255702;255703;255704;255705	255703			10	
LGDVYVNDAFGTAHR	0	Unmodified	1633.7849	0.78486885	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.68	3	8	6					9	8	10	8	8	8	59.376	54.06	2;3	1.4634E-80	46270	160511_QHF_FH_JSI12i_3	240.59	219.22			1.0025	1.0575	36.2	33	5	Median	1.7065	1.4199	10.592	10	2	Median	0.82477	0.98575	17.248	8	0	Median	1.0771	1.0578	11.088	7	1	Median	0.51999	0.56804	20.177	8	2	Median	20142000000	9735900000	10406000000	5393600000	1612400000	3781200000	2064700000	1101900000	962870000	7982200000	3861200000	4121000000	4701700000	3160400000	1541200000	30530	775;866	28892	189200;189201;189202;189203;189204;189205;189206;189207;189208;189209;189210;189211;189212;189213;189214;189215;189216;189217;189218;189219;189220;189221;189222;189223;189224;189225;189226;189227;189228;189229;189230;189231;189232;189233	255706;255707;255708;255709;255710;255711;255712;255713;255714;255715;255716;255717;255718;255719;255720;255721;255722;255723;255724;255725;255726;255727;255728;255729;255730;255731;255732;255733;255734;255735;255736;255737;255738;255739;255740;255741;255742;255743;255744;255745;255746;255747;255748;255749;255750;255751;255752;255753;255754;255755;255756;255757;255758;255759;255760;255761;255762;255763;255764;255765;255766;255767;255768;255769;255770;255771;255772;255773;255774;255775;255776;255777;255778;255779	255769			74	
LGEAAALENNTGSEATGPSRPLPDAPHGVMDSGLPWSK	1	Unmodified	3828.8377	0.83771564	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			80.563	79.213	4	0.024134	66422	160511_QHF_FH_JSI10i_3	17.676	15.973			0.85531	1.0013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85531	1.0013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18385000	10335000	8050000	0	0	0	18385000	10335000	8050000	0	0	0	0	0	0	30531	11	28893	189234	255780;255781	255781			2	
LGEDIVITAHVLK	1	Unmodified	1406.8133	0.81331543	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.857	66.959	3	0.00015569	58413	160511_QHF_FH_JSI11i_2	68.83	64.487			1.0398	1.0608	24.614	4	0	Median	1.2728	1.0991	NaN	1	0	Median	0.84945	1.0238	NaN	1	0	Median	1.3306	1.3491	NaN	1	0	Median	0.68119	0.74531	NaN	1	0	Median	240850000	111720000	129130000	41571000	14934000	26636000	53329000	26359000	26971000	83932000	35551000	48381000	62017000	34881000	27137000	30532	4905	28894	189235;189236;189237;189238	255782;255783;255784;255785;255786;255787;255788	255785			7	
LGEFFQTK	1	Unmodified	968.49673	0.49673232	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	49.651	49.532	2	0.005836	42369	160511_QHF_FH_JSI12i_3	64.42	35.908			0.92324	0.90468	19.696	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0934	1.0399	NaN	1	0	Median	0.77957	0.78706	NaN	1	0	Median	260180000	138210000	121970000	0	0	0	0	0	0	128780000	74624000	54151000	131400000	63589000	67815000	30533	2609	28895	189239;189240	255789;255790;255791	255791			3	
LGEGGPDSDQAIRDR	0	Unmodified	1584.7492	0.74921163	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		21.892	21.557	3	0.049389	17801	160511_QHF_FH_JSI11i_2	26.148	20.994			1.4838	1.5054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4838	1.5054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19547000	6946700	12601000	0	0	0	0	0	0	19547000	6946700	12601000	0	0	0	30534	4647	28896	189241	255792	255792			1	
LGEGSYGSVFK	1	Unmodified	1142.5608	0.56078914	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	49.336	48.519	2	0.0091324	41827	160511_QHF_FH_JSI11i_2	58.699	40.879			0.88775	0.86969	65.097	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2921	1.2731	53.896	2	2	Median	0.47387	0.51037	NaN	1	0	Median	128060000	66269000	61794000	0	0	0	0	0	0	96426000	44122000	52303000	31637000	22146000	9491100	30535	2368	28897	189242;189243;189244	255793;255794;255795	255795			2	
LGEHLYK	1	Unmodified	858.45995	0.45995289	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	18.675	18.288	3	0.018362	15037	160511_QHF_FH_JSI11i_3	37.558	10.304			0.89715	0.903	14.986	5	1	Median	1.1828	1.0245	NaN	1	0	Median	0.58358	0.71598	NaN	1	1	Median	0.99259	0.95989	11.236	2	0	Median	0.89408	0.903	NaN	1	0	Median	174370000	79948000	94425000	14245000	6731300	7513300	31446000	14976000	16470000	93232000	37681000	55552000	35449000	20560000	14890000	30536	5666	28898	189245;189246;189247;189248;189249	255796;255797;255798;255799;255800	255796			5	
LGEHNIDVLEGNEQFINAAK	1	Unmodified	2210.0968	0.096760517	47	CON__P00761			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.38	2	11	4					1	3	3	5	7	6	73.189	71.071	2;3;4	2.2539E-138	63060	160511_QHF_FH_JSI11i_2	346.87	319.46		+	0.71417	0.68681	28.482	18	6	Median	0.70382	0.5846	41.285	3	2	Median	0.74777	0.91323	8.2406	3	0	Median	0.80213	0.75942	8.1564	6	2	Median	0.47997	0.52092	5.3294	6	2	Median	14695000000	8073900000	6620600000	1802400000	1080600000	721740000	2863600000	1594700000	1268900000	4662800000	2280100000	2382700000	5365700000	3118400000	2247300000	30537	47	28899	189250;189251;189252;189253;189254;189255;189256;189257;189258;189259;189260;189261;189262;189263;189264;189265;189266;189267;189268;189269;189270	255801;255802;255803;255804;255805;255806;255807;255808;255809;255810;255811;255812;255813;255814;255815;255816;255817;255818;255819;255820;255821;255822;255823;255824;255825;255826;255827;255828;255829;255830;255831;255832;255833;255834;255835;255836;255837;255838;255839;255840;255841;255842;255843;255844;255845;255846;255847;255848;255849;255850;255851;255852	255827			52	
LGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIK	2	Oxidation (M)	4490.254	0.2540128	47	CON__P00761			yes	yes	0	0	1	1		By MS/MS	By MS/MS	By matching	7.33	6.13			2						1		1	1	1	98.255	96.353	5	1.7991E-89	90268	160511_QHF_FH_JSI11i_3	199.37	194.95		+	1.3028	1.2091	48.328	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.39346	0.46139	NaN	1	1	Median	1.3028	1.2091	NaN	1	0	Median	0.68496	0.69822	NaN	1	0	Median	1156000000	680610000	475440000	0	0	0	118340000	100410000	17922000	794600000	413530000	381070000	243120000	166670000	76450000	30538	47	28900	189271;189272;189273	255853;255854	255853		14	2	
LGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIK	2	Unmodified	4474.2591	0.25909818	47	CON__P00761			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.99		13	13						5	12	10	5	4	103.23	101.88	4;5	3.7686E-278	50473	160513_QHF_FH_JSI10Kac_6	315.7	292.85		+	0.99362	1.0392	62.589	25	5	Median	1.2085	1.0223	89.257	9	1	Median	1.4566	1.7824	55.665	8	3	Linear	1.1397	1.0756	43.178	4	1	Median	0.85945	0.91245	18.844	4	0	Median	4887700000	2722800000	2164800000	1305000000	787900000	517100000	1569600000	844860000	724760000	1165400000	579050000	586340000	847640000	511000000	336640000	30539	47	28900	189274;189275;189276;189277;189278;189279;189280;189281;189282;189283;189284;189285;189286;189287;189288;189289;189290;189291;189292;189293;189294;189295;189296;189297;189298;189299;189300;189301;189302;189303;189304	255855;255856;255857;255858;255859;255860;255861;255862;255863;255864;255865;255866;255867;255868;255869;255870;255871;255872;255873;255874;255875;255876;255877;255878;255879;255880;255881;255882;255883;255884;255885;255886;255887	255887			31	
LGEILANLSNPQLR	0	Unmodified	1536.8624	0.86239089	529	O75448	MED24	Mediator of RNA polymerase II transcription subunit 24	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				79.149	77.755	2	0.0011525	63965	160511_QHF_FH_JSI9i_3	79.693	65.274			1.6775	1.4366	NaN	1	1	Median	1.6775	1.4366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8982600	2608100	6374600	8982600	2608100	6374600	0	0	0	0	0	0	0	0	0	30540	529	28901	189305;189306	255888;255889	255888			2	
LGEINVIGEPFLNVNCEHIK	1	Unmodified	2294.1729	0.17290235	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	90.353	89.884	3	6.8117E-09	79764	160511_QHF_FH_JSI10i_2	108.17	97.668			0.86076	0.96019	50.677	5	2	Median	2.8566	2.4784	NaN	1	1	Median	0.86076	1.0342	NaN	1	0	Median	0.82536	0.8331	NaN	1	0	Median	0.76205	0.79069	27.468	2	1	Median	239290000	129690000	109600000	23916000	3016800	20899000	56428000	35055000	21373000	85879000	51156000	34723000	73070000	40460000	32609000	30541	1409	28902	189307;189308;189309;189310;189311	255890;255891;255892;255893;255894;255895;255896;255897	255895			8	
LGEIVTTIPTIGFNVETVEYK	1	Unmodified	2322.2359	0.23587976	2125;1944;1137;2126	P61204;P84077;P18085;P84085	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.711	7	8	3							3	5	4	6	101.47	101.38	2;3	3.968E-186	89210	160511_QHF_FH_JSI9i_2	316.76	286.32			0.81126	0.9214	27.771	18	0	Median	1.3386	1.117	7.1986	3	0	Median	0.80421	0.92403	7.2283	5	0	Median	1.0613	1.0929	12.172	4	0	Median	0.58478	0.637	15.094	6	0	Median	13476000000	7198200000	6277400000	1428500000	542730000	885760000	3468600000	1919100000	1549500000	4586000000	2194900000	2391100000	3992600000	2541500000	1451100000	30542	1944;2125;1137;2126	28903	189312;189313;189314;189315;189316;189317;189318;189319;189320;189321;189322;189323;189324;189325;189326;189327;189328;189329	255898;255899;255900;255901;255902;255903;255904;255905;255906;255907;255908;255909;255910;255911;255912;255913;255914;255915;255916;255917;255918;255919;255920;255921;255922;255923;255924;255925;255926;255927;255928	255919			30	
LGELILTSESSR	0	Unmodified	1303.6983	0.69834526	2514	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	57.31	56.646	2	0.00033149	49716	160511_QHF_FH_JSI9i_2	72.2	58.823			0.78689	0.72731	27.298	6	0	Median	0.78804	0.66667	NaN	1	0	Median	0.45479	0.55735	NaN	1	0	Median	1.0223	0.98629	26.659	2	0	Median	0.64598	0.69264	19.221	2	0	Median	480720000	312020000	168700000	70507000	37274000	33233000	162360000	127790000	34569000	119950000	64027000	55922000	127910000	82931000	44978000	30543	2514	28904	189330;189331;189332;189333;189334;189335	255929;255930;255931;255932;255933;255934;255935;255936;255937	255932			9	
LGELLFPSSLAGETLGSFSGLR	0	Unmodified	2250.1896	0.18959827	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.18	102.03	3	0.0045905	84711	160511_QHF_FH_JSI10i_3	46.569	32.942			0.72278	0.8282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72278	0.8282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49457000	25887000	23570000	0	0	0	49457000	25887000	23570000	0	0	0	0	0	0	30544	1443	28905	189336	255938	255938			0	
LGELLGHPSFQVK	1	Unmodified	1423.7823	0.78234966	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	60.69	59.975	2;3	2.1509E-05	51458	160511_QHF_FH_JSI12i_3	96.059	72.941			0.99502	0.91377	78.255	5	2	Median	1.9626	1.6162	NaN	1	1	Median	1.2112	1.4068	NaN	1	0	Median	0.99502	0.91377	NaN	1	0	Median	0.34739	0.35813	57.907	2	1	Median	424400000	245220000	179180000	21966000	10772000	11194000	58036000	31932000	26104000	139000000	60226000	78777000	205390000	142290000	63104000	30545	4471	28906	189337;189338;189339;189340;189341	255939;255940;255941;255942;255943;255944;255945;255946	255944			8	
LGELPSWILMR	0	Unmodified	1313.7166	0.71657828	1869	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	2	2	5	2	96.846	93.375	2	8.1863E-37	89480	160511_QHF_FH_JSI11i_3	182.76	145.57			0.99734	0.9956	24.881	8	2	Median	1.4098	1.2037	7.0065	2	0	Median	0.77795	0.94885	NaN	1	0	Median	1.1868	1.159	12.224	3	2	Plateau	0.63584	0.66253	7.7844	2	0	Median	2663500000	1347600000	1315900000	465040000	174900000	290140000	225440000	112660000	112780000	1143700000	545180000	598510000	829360000	514870000	314490000	30546	1869	28907	189342;189343;189344;189345;189346;189347;189348;189349;189350;189351;189352	255947;255948;255949;255950;255951;255952;255953;255954;255955;255956;255957;255958;255959	255948			13	
LGELQGNHFTVVLR	0	Unmodified	1581.8627	0.86272524	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		72.215	62.796	3	0.038282	34050	160513_QHF_FH_JSI11Kac_6	30.894	16.103			1.0038	0.95674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0038	0.95674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50718000	24605000	26113000	0	0	0	0	0	0	50718000	24605000	26113000	0	0	0	30547	4202	28908	189353	255960	255960			1	
LGELTMQLHPVADSSPAGAK	1	Unmodified	2021.0252	0.025175478	3444	Q8IXM2	BAP18	Chromatin complexes subunit BAP18	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		61.363	61.363	3	1.3602E-05	54497	160511_QHF_FH_JSI11i_3	68.639	57.778			1.2326	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2326	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52168000	25269000	26899000	0	0	0	0	0	0	52168000	25269000	26899000	0	0	0	30548	3444	28909	189354	255961	255961			1	
LGEMRLK	1	Oxidation (M)	861.47422	0.47422274	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				31.408	30.004	3	0.0555	24409	160511_QHF_FH_JSI9i_3	41.502	13.395			13.355	11.025	NaN	1	0	Median	13.355	11.025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40906000	4438600	36467000	40906000	4438600	36467000	0	0	0	0	0	0	0	0	0	30549	4817	28910	189355	255962	255962			1	
LGEMWNNLNDSEK	1	Unmodified	1548.6879	0.68785692	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	55.954	55.32	2	1.3716E-10	48978	160511_QHF_FH_JSI11i_3	151.26	123.93			0.80115	0.94992	13.909	7	1	Median	1.4819	1.2653	NaN	1	0	Median	0.79516	0.96141	1.7006	2	1	Median	0.99046	0.95793	7.8683	2	0	Median	0.79146	0.84491	2.8032	2	0	Median	782650000	408630000	374030000	113330000	38448000	74880000	185740000	116790000	68950000	263700000	108360000	155340000	219880000	145030000	74855000	30550	278	28911	189356;189357;189358;189359;189360;189361;189362	255963;255964;255965;255966;255967;255968;255969;255970;255971;255972;255973;255974;255975;255976;255977;255978	255963			16	
LGEMWNNTAADDK	1	Unmodified	1463.6351	0.63509307	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.73	4	6	3							5	2	3	3	43.707	43.008	2	1.9517E-07	37343	160511_QHF_FH_JSI9i_2	99.215	86.639			1.1519	1.1957	29.985	10	3	Median	1.5605	1.3343	26.988	3	2	Median	0.91796	1.1254	13.052	2	0	Median	1.4941	1.8474	27.688	3	1	Plateau	0.81174	0.85697	11.317	2	0	Median	2686500000	1318900000	1367600000	433980000	187810000	246170000	849070000	405680000	443380000	846560000	370470000	476090000	556920000	354910000	202010000	30551	928	28912	189363;189364;189365;189366;189367;189368;189369;189370;189371;189372;189373;189374;189375	255979;255980;255981;255982;255983;255984;255985;255986;255987;255988;255989;255990;255991;255992;255993;255994;255995;255996;255997;255998	255993			20	
LGEMWNNTAADDK	1	Oxidation (M)	1479.63	0.63000769	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.554	31.951	2	0.0025061	28629	160511_QHF_FH_JSI12i_1	61.344	46.371			0.97964	1.0255	8.2169	4	0	Median	1.2193	1.0106	NaN	1	0	Median	0.8964	1.0674	NaN	1	0	Median	1.0706	1.0405	NaN	1	0	Median	0.86264	0.88723	NaN	1	0	Median	233680000	114400000	119280000	44305000	19265000	25040000	75914000	41122000	34792000	59133000	24324000	34809000	54325000	29688000	24637000	30552	928	28912	189376;189377;189378;189379	255999;256000;256001	255999		505	3	
LGEMWNNTAADDKQPYEK	2	Oxidation (M)	2124.9422	0.94223371	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2								1	3	4	39.458	38.802	3	1.1247E-06	33877	160511_QHF_FH_JSI11i_3	105.38	89.071			0.89037	0.90741	34.879	8	3	Median	NaN	NaN	NaN	0	0	Median	0.73353	0.88857	NaN	1	1	Median	1.1654	1.1159	10.074	3	0	Plateau	0.79034	0.84421	51.701	4	2	Median	679690000	355980000	323710000	0	0	0	62794000	38250000	24545000	288170000	135630000	152540000	328720000	182100000	146620000	30553	928	28913	189380;189381;189382;189383;189384;189385;189386;189387	256002;256003;256004;256005;256006	256002		505	4	
LGEMWNNTAADDKQPYEK	2	Unmodified	2108.9473	0.94731909	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.64	1	5	6							1	4	3	4	47.665	47.032	2;3	8.3749E-22	40046	160511_QHF_FH_JSI12i_3	215	194.57			0.7366	0.77847	30.861	12	5	Median	1.5139	1.2656	NaN	1	0	Median	0.8774	1.0634	24.325	4	3	Linear	0.8659	0.89544	8.7165	3	0	Plateau	0.6542	0.7024	38.983	4	2	Median	5518300000	3175800000	2342600000	576670000	212730000	363950000	1075400000	571300000	504080000	2302500000	1313800000	988770000	1563800000	1078000000	485790000	30554	928	28913	189388;189389;189390;189391;189392;189393;189394;189395;189396;189397;189398;189399	256007;256008;256009;256010;256011;256012;256013;256014;256015;256016;256017;256018;256019;256020;256021;256022;256023;256024;256025;256026;256027;256028;256029;256030;256031;256032;256033;256034;256035	256034			29	
LGEMWSEQSAK	1	Unmodified	1264.5758	0.57578728	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	3	1	40.911	40.078	2	2.8258E-09	34176	160511_QHF_FH_JSI12i_2	127.76	113.61			1.1176	1.1502	40.733	5	1	Median	1.6873	1.4369	NaN	1	0	Median	0.94287	1.1502	NaN	1	0	Median	1.5218	1.5006	39.61	2	1	Median	0.59637	0.65168	NaN	1	0	Median	1054500000	523770000	530700000	170710000	69021000	101690000	193070000	103490000	89584000	465000000	202330000	262660000	225690000	148930000	76766000	30555	1280	28914	189400;189401;189402;189403;189404;189405	256036;256037;256038;256039;256040;256041;256042;256043	256038			8	
LGENMILK	1	Unmodified	916.50519	0.50518852	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	48.828	47.69	2	0.014487	40688	160511_QHF_FH_JSI12i_2	51.346	16.538			0.7908	0.87872	30.796	3	1	Median	1.354	1.1513	NaN	1	0	Median	0.50371	0.62279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7908	0.87872	NaN	1	0	Median	599910000	360110000	239800000	167870000	87692000	80181000	181110000	101820000	79296000	0	0	0	250930000	170600000	80322000	30556	1568	28915	189406;189407;189408	256044;256045;256046;256047	256044			4	
LGENVANIYK	1	Unmodified	1119.5924	0.59242362	5597	Q9Y3I1	FBXO7	F-box only protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.102	44.609	2	0.0083034	38444	160511_QHF_FH_JSI11i_2	64.191	47.651			0.82821	0.84041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82821	0.84041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57236000	32516000	24720000	0	0	0	0	0	0	57236000	32516000	24720000	0	0	0	30557	5597	28916	189409	256048	256048			1	
LGEPDYIPSQQDILLAR	0	Unmodified	1927.0051	0.005091963	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	82.96	82.525	2	0.00010876	75088	160511_QHF_FH_JSI12i_1	89.283	66.047			1.4013	1.4076	19.687	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6607	1.6179	NaN	1	1	Median	1.1825	1.2247	NaN	1	1	Median	106550000	38245000	68310000	0	0	0	0	0	0	52870000	14251000	38619000	53685000	23994000	29691000	30558	2531	28917	189410;189411	256049;256050	256050			2	
LGEPIPISK	1	Unmodified	952.55933	0.55933258	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.841	47.16	2	0.013487	42449	160511_QHF_FH_JSI10i_1	46.447	28.044			0.9791	1.0468	32.27	4	0	Median	1.6593	1.3331	NaN	1	0	Median	0.83287	0.98097	NaN	1	0	Median	1.151	1.1171	NaN	1	0	Median	0.59569	0.62621	NaN	1	0	Median	276480000	145570000	130910000	59623000	20240000	39383000	73217000	42180000	31036000	81164000	43166000	37998000	62473000	39982000	22490000	30559	1104	28918	189412;189413;189414;189415	256051;256052	256051			2	
LGEQVFGTTGK	1	Unmodified	1135.5873	0.58733824	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	45.738	39.757	2	0.0038261	34211	160511_QHF_FH_JSI12i_2	67.08	53.173			0.93984	0.9847	76.339	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7122	1.6894	NaN	1	1	Median	0.51588	0.57395	NaN	1	1	Median	179040000	119220000	59814000	0	0	0	0	0	0	6515800	2914800	3601100	172520000	116310000	56213000	30560	4675	28919	189416;189417	256053;256054	256053			2	
LGERDDTIPPEYR	0	Unmodified	1559.758	0.7579854	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							3	1	3	4	37.107	36.445	3	0.004756	30788	160511_QHF_FH_JSI12i_3	48.112	41.383			0.79231	0.76208	25.97	8	3	Median	1.189	1.0206	43.347	2	1	Median	0.61147	0.7577	NaN	1	0	Median	0.86354	0.85949	NaN	1	0	Median	0.67404	0.68199	14.943	4	2	Median	436200000	247350000	188850000	102790000	44221000	58573000	80711000	48414000	32296000	87919000	48393000	39526000	164770000	106320000	58451000	30561	1181	28920	189418;189419;189420;189421;189422;189423;189424;189425;189426;189427;189428	256055;256056;256057;256058;256059;256060;256061;256062;256063;256064	256061			9	
LGESANAAK	1	Unmodified	859.43995	0.43994572	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.1034	7.7541	2	0.00069719	5544	160511_QHF_FH_JSI10i_1	75.825	28.075			0.79928	0.76491	25.442	4	0	Median	1.0999	0.9102	NaN	1	0	Median	0.5203	0.61423	NaN	1	0	Median	1.0533	1.0273	NaN	1	0	Median	0.60649	0.64281	NaN	1	0	Median	2868800000	1595300000	1273500000	543330000	262870000	280450000	807970000	508720000	299250000	772750000	381160000	391590000	744720000	442560000	302160000	30562	4806	28921	189429;189430;189431;189432	256065;256066;256067;256068;256069;256070;256071	256070			7	
LGESQTLQQFSR	0	Unmodified	1392.6997	0.69974224	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	2	3	45.385	44.71	2	8.7501E-05	38187	160511_QHF_FH_JSI12i_2	92.112	75.016			0.96203	1.0083	40.899	6	2	Median	NaN	NaN	NaN	0	0	Median	1.0284	1.2298	46.213	2	2	Median	1.3006	1.2676	14.247	2	0	Median	0.62119	0.65855	23.651	2	0	Median	328160000	161970000	166190000	0	0	0	107080000	55738000	51339000	122410000	46417000	75996000	98670000	59811000	38859000	30563	2470	28922	189433;189434;189435;189436;189437;189438;189439	256072;256073;256074;256075;256076;256077;256078;256079;256080	256074			9	
LGESVQDLSSFDEYSSELK	1	Unmodified	2131.9797	0.97972465	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	83.447	83.069	2;3	2.339E-67	75484	160511_QHF_FH_JSI10i_1	234.22	202.58			0.77655	0.87666	24.112	5	3	Median	NaN	NaN	NaN	0	0	Median	0.77655	0.92256	NaN	1	0	Median	0.8	0.78312	15.957	2	2	Median	0.69266	0.70936	40.113	2	1	Median	202850000	108560000	94290000	0	0	0	61062000	33523000	27539000	85667000	45204000	40463000	56119000	29830000	26289000	30564	5321	28923	189440;189441;189442;189443;189444;189445	256081;256082;256083;256084;256085;256086;256087;256088;256089;256090	256089			10	
LGETDEEK	1	Unmodified	919.41346	0.4134562	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.5385	8.3592	2	0.034605	6191	160511_QHF_FH_JSI10i_1	49.097	25.573			1.5282	1.623	8.8019	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4887	1.7273	NaN	1	1	Median	1.5687	1.5251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	319330000	124270000	195060000	0	0	0	150580000	56037000	94544000	168750000	68231000	100520000	0	0	0	30565	5591	28924	189446;189447	256091;256092	256092			2	
LGEVVNTHGPVEPDK	1	Unmodified	1589.8049	0.80493559	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.51	2	6	2				2			1	4	3	4	37.16	34.7	2;3	4.298E-21	29487	160511_QHF_FH_JSI12i_2	135.58	112.21			0.9151	0.99622	27.293	10	0	Median	1.889	1.6201	NaN	1	0	Median	0.86504	1.0621	13.983	3	0	Median	0.99573	1.0295	7.3442	3	0	Median	0.60367	0.66141	12.069	3	0	Median	2502000000	1333300000	1168800000	341620000	156480000	185140000	664180000	365570000	298610000	952140000	472520000	479620000	544100000	338700000	205410000	30566	1351	28925	189448;189449;189450;189451;189452;189453;189454;189455;189456;189457;189458;189459	256093;256094;256095;256096;256097;256098;256099;256100;256101;256102;256103;256104;256105;256106;256107;256108;256109;256110;256111	256098			19	
LGEWDLPEAVQR	0	Unmodified	1411.7096	0.70957864	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.899	71.613	2	0.0010937	61791	160511_QHF_FH_JSI12i_2	67.726	38.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30567	4495	28926	189460	256112	256112			1	
LGEWQAVLQNMVSSYLVHHGYCATATAFAR	0	Unmodified	3379.623	0.6230356	3162	Q6VN20	RANBP10	Ran-binding protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.645	90.925	4	6.4732E-29	52727	160513_QHF_FH_JSI10Kac_6	122.57	112.17			1.2232	1.4463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2232	1.4463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202560000	104930000	97630000	0	0	0	202560000	104930000	97630000	0	0	0	0	0	0	30568	3162	28927	189461	256113	256113			1	
LGEWVGLCK	1	Unmodified	1060.5376	0.53755128	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.537	57.878	2	0.00030202	49737	160511_QHF_FH_JSI12i_2	83.265	68.114			0.72236	0.7933	20.008	6	3	Median	1.0016	0.86664	NaN	1	1	Median	0.7818	0.94934	NaN	1	0	Median	0.72093	0.70485	22.217	2	1	Median	0.61336	0.66506	19.438	2	1	Median	2003600000	1072400000	931210000	106700000	42870000	63833000	258970000	153520000	105450000	949820000	495720000	454100000	688150000	380330000	307830000	30569	1258	28928	189462;189463;189464;189465;189466;189467	256114;256115;256116;256117;256118;256119;256120;256121;256122	256115			9	
LGEYGFQNALIVR	0	Unmodified	1478.7882	0.78816332	50	CON__P02769			yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								2	1	2	77.076	76.357	2	8.2765E-05	65966	160511_QHF_FH_JSI12i_2	123.51	96.915		+	0.78396	0.80087	45.103	5	4	Median	NaN	NaN	NaN	0	0	Median	0.82923	1.0141	4.1413	2	2	Median	0.67231	0.69522	NaN	1	1	Median	0.48616	0.5215	60.667	2	1	Median	384920000	237040000	147880000	0	0	0	153570000	81758000	71816000	76580000	45291000	31289000	154770000	109990000	44775000	30570	50	28929	189468;189469;189470;189471;189472	256123;256124;256125;256126;256127	256123			5	
LGFAGLVQEISFGTTK	1	Unmodified	1666.893	0.89302232	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		2	8						8	5	5	4	4	97.967	94.212	2;3	3.1954E-159	88249	160511_QHF_FH_JSI12i_3	301.16	258.41			0.88816	0.94632	34.056	18	0	Median	1.6307	1.3573	12.123	5	0	Median	0.69704	0.80329	5.6874	5	0	Median	1.4473	1.3744	14.442	4	0	Linear	0.52765	0.54906	8.6206	4	0	Median	28162000000	14979000000	13183000000	5103300000	1919300000	3184000000	6694300000	3922600000	2771600000	8015100000	3371100000	4644000000	8349600000	5765900000	2583700000	30571	1630	28930	189473;189474;189475;189476;189477;189478;189479;189480;189481;189482;189483;189484;189485;189486;189487;189488;189489;189490	256128;256129;256130;256131;256132;256133;256134;256135;256136;256137;256138;256139;256140;256141;256142;256143;256144;256145;256146;256147;256148;256149;256150;256151;256152;256153;256154;256155;256156;256157;256158;256159	256148			32	
LGFATSSDVIEMK	1	Unmodified	1396.6908	0.69081704	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	70.57	69.804	2	1.1387E-05	61046	160511_QHF_FH_JSI11i_2	124.1	113.58			0.75962	0.86819	39.847	5	2	Median	1.581	1.3311	NaN	1	0	Median	0.74123	0.8589	1.5206	2	1	Median	0.90999	0.92967	NaN	1	0	Median	0.39371	0.44213	NaN	1	1	Median	266190000	149370000	116820000	40354000	17484000	22870000	86076000	46866000	39211000	90083000	49977000	40106000	49673000	35040000	14633000	30572	1532	28931	189491;189492;189493;189494;189495	256160;256161;256162;256163;256164;256165;256166	256164			7	
LGFDVVFNYK	1	Unmodified	1200.6179	0.61791009	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	88.233	87.696	2	0.00036973	77157	160511_QHF_FH_JSI11i_2	76.679	56.054			0.79262	0.8677	34.745	4	1	Median	NaN	NaN	NaN	0	0	Median	0.71393	0.86881	NaN	1	0	Median	1.2918	1.2872	NaN	1	0	Median	0.66824	0.69051	32.123	2	1	Median	136350000	67425000	68926000	0	0	0	21087000	11346000	9740600	56527000	25651000	30876000	58737000	30427000	28309000	30573	2581	28932	189496;189497;189498;189499;189500	256167;256168;256169;256170;256171	256169			5	
LGFEDVIAEPVTTHSFDK	1	Unmodified	2003.984	0.98402217	1744	P51636	CAV2	Caveolin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.193	83.36	3	2.4783E-05	71964	160511_QHF_FH_JSI12i_2	75.548	62.511			0.90578	0.97269	43.89	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2942	1.3267	NaN	1	0	Median	0.63392	0.71317	NaN	1	0	Median	148250000	82713000	65542000	0	0	0	0	0	0	79224000	37621000	41603000	69031000	45092000	23939000	30574	1744	28933	189501;189502	256172;256173	256172			2	
LGFEEFK	1	Unmodified	868.43307	0.43306943	813	P04632;Q96L46	CAPNS1;CAPNS2	Calpain small subunit 1;Calpain small subunit 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		54.73	54.076	2	0.040781	47909	160511_QHF_FH_JSI10i_2	46.994	19.857			1.1429	1.1844	11.254	5	0	Median	1.7118	1.452	NaN	1	0	Median	0.92617	1.1085	3.9057	2	0	Median	1.2024	1.2029	2.2017	2	0	Median	NaN	NaN	NaN	0	0	Median	1387200000	639450000	747720000	244330000	84705000	159630000	390810000	194240000	196570000	752020000	360500000	391520000	0	0	0	30575	813	28934	189503;189504;189505;189506;189507	256174;256175;256176;256177	256177			4	
LGFEGGQTPFYIR	0	Unmodified	1483.746	0.74596415	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	78.793	78.208	2	7.7891E-06	67902	160511_QHF_FH_JSI12i_3	125.23	114.7			0.93835	1.0329	38.127	6	0	Median	1.8605	1.5942	NaN	1	0	Median	0.86606	1.0444	NaN	1	0	Median	1.1209	1.0932	9.5985	2	0	Median	0.56484	0.60728	2.7368	2	0	Median	625130000	300230000	324890000	80317000	28812000	51505000	120080000	53335000	66745000	263820000	122430000	141390000	160910000	95653000	65256000	30576	5173	28935	189508;189509;189510;189511;189512;189513	256178;256179;256180;256181;256182;256183;256184;256185;256186;256187;256188	256188			11	
LGFFTTYFLPLANTLK	1	Unmodified	1845.0077	0.0076581454	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	100.71	96.463	2;3	8.5899E-232	51128	160513_QHF_FH_JSI11Kac_6	335.32	297.32			0.83077	0.92571	44.814	16	1	Median	1.8414	1.5288	17.634	4	1	Median	0.7762	0.91306	3.1226	4	0	Median	1.3479	1.2703	18.38	4	0	Linear	0.4719	0.48509	9.1947	4	0	Median	9043500000	4511200000	4532300000	1815900000	606540000	1209400000	1926700000	1085500000	841260000	3382400000	1493700000	1888700000	1918500000	1325500000	593010000	30577	2904	28936	189514;189515;189516;189517;189518;189519;189520;189521;189522;189523;189524;189525;189526;189527;189528;189529	256189;256190;256191;256192;256193;256194;256195;256196;256197;256198;256199;256200;256201;256202;256203;256204;256205;256206;256207;256208;256209;256210;256211;256212;256213;256214;256215;256216	256197			28	
LGFGSFVDK	1	Unmodified	968.49673	0.49673232	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		63.787	63.034	2	0.0073653	56087	160511_QHF_FH_JSI11i_3	53.493	0			1.1639	1.205	7.5468	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.2711	NaN	1	1	Median	1.2112	1.1424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	360170000	163030000	197140000	0	0	0	160160000	66803000	93357000	200010000	96230000	103780000	0	0	0	30578	1136	28937	189530;189531	256217;256218	256217			2	
LGFGSFVEK	1	Unmodified	982.51238	0.51238239	1140	P18564	ITGB6	Integrin beta-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	61.668	60.864	2	0.00056389	51195	160511_QHF_FH_JSI10i_3	78.334	0			1.5092	1.4039	21.112	7	1	Median	1.8032	1.5005	9.4124	2	0	Median	1.0106	1.2052	13.456	2	0	Median	1.6458	1.615	7.3151	2	0	Median	0.92594	0.95094	NaN	1	1	Median	8962600000	4046800000	4915800000	1297000000	499040000	797970000	1504700000	798500000	706220000	2952000000	1127200000	1824800000	3208900000	1622000000	1586900000	30579	1140	28938	189532;189533;189534;189535;189536;189537;189538	256219;256220;256221;256222;256223;256224;256225;256226;256227;256228;256229;256230;256231	256222			13	
LGFGTGVNVYLMK	1	Unmodified	1397.7377	0.73770765	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	2		2	85.484	84.701	2	8.0356E-05	73347	160511_QHF_FH_JSI12i_3	113.69	83.919			0.51883	0.50455	37.207	5	5	Linear	1.6439	1.3562	NaN	1	1	Median	0.80485	0.92609	10.846	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5637	0.57744	11.697	2	2	Median	414850000	247870000	166980000	32329000	10926000	21402000	102800000	53814000	48989000	0	0	0	279720000	183130000	96591000	30580	4154	28939	189539;189540;189541;189542;189543	256232;256233;256234;256235;256236;256237;256238	256237			7	
LGFHEVHILPDINQNPR	0	Unmodified	1998.0435	0.043543155	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				74.036	72.568	3;4	0.00027848	59775	160511_QHF_FH_JSI9i_3	66.246	49.167			2.2122	1.9037	NaN	1	1	Median	2.2122	1.9037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6283300	1391600	4891700	6283300	1391600	4891700	0	0	0	0	0	0	0	0	0	30581	1841	28940	189544;189545	256239;256240	256239			2	
LGFHLPLEVAYQR	0	Unmodified	1541.8354	0.83544786	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							3	2	2	1	83.224	82.471	2;3	2.1334E-07	68196	160511_QHF_FH_JSI9i_3	70.089	66.832			1.3103	1.2185	39.611	7	1	Median	1.6455	1.3567	6.2573	2	0	Median	0.71026	0.81463	11.191	2	0	Median	1.3592	1.2816	7.1369	2	1	Median	0.48301	0.48397	NaN	1	0	Median	589820000	309560000	280260000	105440000	38097000	67346000	185720000	107860000	77860000	174310000	79511000	94801000	124340000	84086000	40256000	30582	2636	28941	189546;189547;189548;189549;189550;189551;189552;189553	256241;256242;256243;256244;256245;256246;256247;256248;256249;256250;256251	256250			11	
LGFITNNSSK	1	Unmodified	1079.5611	0.56112349	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	37.138	36.598	2	0.0022309	31928	160511_QHF_FH_JSI11i_3	74.173	41.332			0.54685	0.44056	27.586	3	3	Median	0.54685	0.44056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77424	0.70678	NaN	1	1	Median	0.43515	0.43613	NaN	1	1	Median	286100000	192060000	94043000	124580000	86142000	38437000	0	0	0	70831000	42047000	28784000	90688000	63866000	26822000	30583	23	28942	189554;189555;189556	256252;256253;256254	256252			3	
LGFMSAFVK	1	Unmodified	998.52592	0.52592396	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	79.744	75.238	2	2.693E-05	67788	160511_QHF_FH_JSI12i_3	103.83	86.593			0.95394	1.0409	34.986	8	0	Median	1.8699	1.5302	14.598	2	0	Median	0.90687	1.0409	13.249	2	0	Median	1.0591	1.0169	22.642	2	0	Median	0.61026	0.63928	3.5552	2	0	Median	2729200000	1383000000	1346200000	605880000	218330000	387550000	562130000	284950000	277190000	795010000	396040000	398970000	766170000	483710000	282460000	30584	1465	28943	189557;189558;189559;189560;189561;189562;189563;189564	256255;256256;256257;256258;256259;256260;256261;256262;256263;256264;256265;256266;256267;256268;256269;256270;256271;256272;256273	256269			19	
LGFSEVELVQMVVDGVK	1	Unmodified	1847.9703	0.97028636	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		8	8						8	5	6	7	6	100.92	97.807	2;3	4.737E-137	91013	160511_QHF_FH_JSI10i_2	286.65	248.68			0.80577	0.8897	34.097	22	1	Median	1.5022	1.2664	9.9121	4	0	Linear	0.74052	0.91666	10.856	6	1	Median	0.98282	0.98025	23.816	6	0	Median	0.55931	0.5955	6.8815	6	0	Median	6350800000	3266100000	3084800000	1085400000	413340000	672010000	1533500000	881710000	651810000	2590800000	1245100000	1345600000	1141200000	725910000	415300000	30585	1017	28944	189565;189566;189567;189568;189569;189570;189571;189572;189573;189574;189575;189576;189577;189578;189579;189580;189581;189582;189583;189584;189585;189586;189587;189588	256274;256275;256276;256277;256278;256279;256280;256281;256282;256283;256284;256285;256286;256287;256288;256289;256290;256291;256292;256293;256294;256295;256296;256297;256298;256299;256300;256301;256302;256303;256304;256305;256306;256307;256308;256309	256296			36	
LGFSEVELVQMVVDGVK	1	Oxidation (M)	1863.9652	0.96520098	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	1	0				By MS/MS	11.3	6.6		1							2				3	98.144	91.789	2;3	8.9446E-10	87659	160511_QHF_FH_JSI12i_2	141.58	114.87			0.34983	0.39492	25.806	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34983	0.39492	25.806	3	2	Median	150110000	110530000	39577000	0	0	0	0	0	0	0	0	0	150110000	110530000	39577000	30586	1017	28944	189589;189590;189591	256310;256311;256312	256310		610	3	
LGFSEYCR	0	Unmodified	1030.4542	0.45421558	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	39.765	38.838	2	0.007058	33273	160511_QHF_FH_JSI11i_2	60.682	49.613			2.5698	2.6817	60.399	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90427	1.0974	NaN	1	0	Median	2.8725	2.9048	NaN	1	0	Median	0.85243	0.96098	NaN	1	0	Median	217100000	89493000	127610000	0	0	0	53790000	29111000	24679000	133780000	44062000	89718000	29528000	16320000	13208000	30587	2545	28945	189592;189593;189594	256313;256314	256313			2	
LGFSFVRITALMVSCNR	0	Unmodified	1970.023	0.023007409	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		65.704	65.704	3	0.057178	58450	160511_QHF_FH_JSI11i_3	21.233	0.28446			0.96638	0.9175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96638	0.9175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3401300000	1746300000	1655000000	0	0	0	0	0	0	3401300000	1746300000	1655000000	0	0	0	30588	404	28946	189595	256315	256315			1	
LGFSLTPSK	1	Unmodified	948.52803	0.52803245	1475	P38432	COIL	Coilin	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	56.277	56.029	2	0.0050369	48065	160511_QHF_FH_JSI12i_3	57.59	37.308			0.58613	0.59807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58613	0.59807	NaN	1	1	Median	209180000	107670000	101510000	0	0	0	0	0	0	0	0	0	209180000	107670000	101510000	30589	1475	28947	189596;189597	256316;256317	256317			2	
LGFSSPYEGVLNK	1	Unmodified	1409.7191	0.7190807	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.274	69.976	2	0.0079393	60626	160511_QHF_FH_JSI12i_3	48.998	35.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30590	2420	28948	189598	256318	256318			1	
LGFTQGDVGLAMGK	1	Unmodified	1392.7071	0.7071358	1062	P14859;Q9UKI9;P09086	POU2F1;POU2F3;POU2F2	POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	70.923	69.972	2	8.4789E-13	61236	160511_QHF_FH_JSI11i_2	121.02	93.008			0.9975	1.0296	105.11	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1188	2.165	NaN	1	1	Median	0.46961	0.48964	NaN	1	1	Median	74265000	21754000	52511000	0	0	0	0	0	0	57602000	10393000	47210000	16663000	11361000	5301300	30591	1062	28949	189599;189600;189601	256319;256320;256321	256321			3	
LGFTQSQIDEIDHDYER	0	Unmodified	2064.9389	0.93886289	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		67.007	67.007	3	0.00010193	59662	160511_QHF_FH_JSI11i_3	53.773	48.193			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30592	2437	28950	189602	256322	256322			1	
LGFTVTVGNNR	0	Unmodified	1176.6251	0.62512073	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			61.77	53.083	2	2.9932E-07	29261	160513_QHF_FH_JSI10Kac_6	113.18	73.174			1.1516	1.1664	0.24385	2	0	Median	1.3367	1.1644	NaN	1	0	Median	0.99205	1.1684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45317000	21560000	23757000	9633400	3139000	6494400	35684000	18421000	17263000	0	0	0	0	0	0	30593	1316	28951	189603;189604	256323;256324;256325	256325			3	
LGFVSGLINQGK	1	Unmodified	1231.6925	0.69247202	5615	Q9Y487	ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.899	70.09	2	1.4242E-05	58658	160511_QHF_FH_JSI10i_3	114.84	96.061			0.74088	0.7703	73.286	4	0	Median	1.36	1.1089	NaN	1	0	Median	0.68092	0.77676	NaN	1	0	Median	0.80613	0.7639	NaN	1	0	Median	0.20625	0.20922	NaN	1	0	Median	210330000	115390000	94936000	47416000	17003000	30413000	48301000	30579000	17722000	80210000	38651000	41559000	34401000	29158000	5242800	30594	5615	28952	189605;189606;189607;189608	256326;256327;256328;256329;256330;256331;256332	256328			7	
LGFYGLDESDLDK	1	Unmodified	1470.6878	0.68784015	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	1	2	77.792	77.107	2	3.5634E-07	70013	160511_QHF_FH_JSI11i_1	136.48	115.61			1.0617	1.0702	49.907	8	5	Median	1.5382	1.2767	18.573	3	2	Median	0.78581	0.92831	64.856	2	1	Median	0.93653	0.92213	NaN	1	0	Median	0.47336	0.50462	4.4563	2	2	Median	622330000	332180000	290160000	173840000	72464000	101380000	168940000	108540000	60402000	175350000	85915000	89433000	104210000	65263000	38944000	30595	2185	28953	189609;189610;189611;189612;189613;189614;189615;189616	256333;256334;256335;256336;256337;256338;256339;256340	256333			8	
LGGAGMER	0	Unmodified	789.38032	0.38032236	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	11.361	11.193	2	0.003598	8802	160511_QHF_FH_JSI11i_3	71.342	42.004			0.93757	1.0464	25.043	4	1	Median	NaN	NaN	NaN	0	0	Median	0.78995	0.96961	NaN	1	0	Median	1.2629	1.2343	12.57	2	0	Median	0.73751	0.7469	NaN	1	1	Median	4649600000	2549600000	2100000000	0	0	0	991630000	536160000	455460000	1975200000	985710000	989510000	1682800000	1027700000	655070000	30596	1765	28954	189617;189618;189619;189620	256341;256342;256343;256344	256341			4	
LGGAVLSFSEATSSVQK	1	Unmodified	1679.873	0.87301516	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	3	3	1	69.609	68.832	2;3	1.3138E-10	59505	160511_QHF_FH_JSI12i_3	142.83	126.97			1.302	1.2163	37.722	9	1	Median	1.5735	1.3059	5.8018	2	1	Median	0.85467	0.98987	52.902	3	0	Median	1.302	1.2163	22.731	3	0	Median	0.60382	0.60745	NaN	1	0	Median	592060000	294100000	297960000	50756000	19965000	30790000	120660000	58032000	62624000	270330000	118050000	152290000	150310000	98057000	52256000	30597	1296	28955	189621;189622;189623;189624;189625;189626;189627;189628;189629	256345;256346;256347;256348;256349;256350;256351;256352;256353;256354;256355;256356;256357	256357			13	
LGGEAHSMVWDPSGER	0	Unmodified	1726.7733	0.77331789	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									3	1	45.859	45.778	2;3	1.8797E-17	40537	160511_QHF_FH_JSI11i_3	128.67	111.65			0.9752	0.93011	42.941	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.01	0.95832	4.2254	2	0	Median	0.43366	0.45634	NaN	1	0	Median	125430000	68269000	57157000	0	0	0	0	0	0	103660000	53949000	49711000	21765000	14319000	7445300	30598	4956	28956	189630;189631;189632;189633	256358;256359;256360;256361	256359			3	
LGGEVSCLVAGTK	1	Unmodified	1289.6649	0.66493664	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	52.007	51.054	2	4.9975E-05	43772	160511_QHF_FH_JSI12i_2	111.63	81.886			0.69816	0.71015	14.503	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.64195	0.79749	NaN	1	0	Median	0.69816	0.71015	NaN	1	0	Median	0.53628	0.59779	NaN	1	0	Median	437580000	252060000	185520000	0	0	0	110090000	64928000	45159000	230420000	124230000	106180000	97077000	62900000	34177000	30599	1041	28957	189634;189635;189636	256362;256363;256364;256365;256366	256362			5	
LGGFGSK	1	Unmodified	664.35443	0.35442518	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	17.938	17.377	2	0.04193	14355	160511_QHF_FH_JSI11i_3	46.426	15.136			1.1594	1.216	24.561	4	0	Median	1.8004	1.5015	NaN	1	0	Median	0.97085	1.1093	NaN	1	0	Median	1.3845	1.3329	NaN	1	0	Median	0.83516	0.85425	NaN	1	0	Median	894000000	453590000	440410000	103820000	44035000	59782000	153830000	83845000	69986000	240120000	95065000	145060000	396220000	230640000	165580000	30600	2578	28958	189637;189638;189639;189640	256367;256368;256369	256367			3	
LGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLK	1	Unmodified	3322.7119	0.71189342	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	102.71	102.6	3	6.7872E-21	88519	160511_QHF_FH_JSI12i_2	90.858	85.646			0.54744	0.67827	13.813	3	0	Median	NaN	NaN	NaN	0	0	Median	0.54619	0.67827	NaN	1	0	Median	0.54744	0.54859	NaN	1	0	Median	0.64258	0.71099	NaN	1	0	Median	245930000	149410000	96522000	0	0	0	60701000	38457000	22245000	107640000	65740000	41902000	77586000	45210000	32376000	30601	144	28959	189641;189642;189643	256370;256371	256370			2	
LGGHGPSFPLK	1	Unmodified	1108.6029	0.60292873	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.16		3	8						5	4	4	5	3	41.706	38.228	2;3	1.8402E-10	33213	160511_QHF_FH_JSI11i_3	128.38	105.31			0.86979	0.91267	28.069	16	0	Median	1.3674	1.1447	6.7333	4	0	Median	0.75572	0.8713	7.6626	4	0	Median	0.99394	0.96651	12.644	5	0	Median	0.48307	0.48838	13.645	3	0	Median	15976000000	7577400000	8398800000	3334000000	1422100000	1911900000	3889800000	1774700000	2115100000	4103200000	1637600000	2465600000	4649200000	2743000000	1906200000	30602	1024	28960	189644;189645;189646;189647;189648;189649;189650;189651;189652;189653;189654;189655;189656;189657;189658;189659	256372;256373;256374;256375;256376;256377;256378;256379;256380;256381;256382;256383;256384;256385;256386;256387;256388;256389;256390;256391;256392;256393;256394;256395;256396;256397;256398;256399;256400;256401;256402;256403;256404;256405;256406;256407;256408;256409;256410;256411;256412	256377			41	
LGGHGPSFPLKGITEQQK	2	Acetyl (K)	1935.0214	0.021410729	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	71.83	62.308	3	2.0413E-05	33751	160513_QHF_FH_JSI11Kac_6	82.449	66.507			0.33502	0.3298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33502	0.3298	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30098000	21430000	8667900	0	0	0	0	0	0	24327000	15659000	8667900	5771100	5771100	0	30603	1024	28961	189660;189661	256413;256414	256413	845		2	
LGGIAYFLSR	0	Unmodified	1095.6077	0.60767975	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	81.885	72.443	2	0.025592	38426	160513_QHF_FH_JSI12Kac_6	56.434	27.264			0.63712	0.6528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63712	0.6528	NaN	1	1	Median	19308000	12536000	6771100	0	0	0	0	0	0	0	0	0	19308000	12536000	6771100	30604	4681	28962	189662	256415	256415			1	
LGGIGQFLAK	1	Unmodified	1002.5862	0.58621603	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	67.807	66.99	2	1.0746E-09	59639	160511_QHF_FH_JSI11i_3	136.16	91.708			1.0448	0.97474	40.953	5	1	Median	1.2022	0.97474	NaN	1	0	Median	1.0423	1.2288	58.926	2	1	Median	1.0448	0.98453	NaN	1	0	Median	0.58309	0.61228	NaN	1	0	Median	8408200000	4384000000	4024200000	2253700000	1183000000	1070700000	2033800000	1084500000	949330000	1968300000	863470000	1104800000	2152400000	1253000000	899360000	30605	2265	28963	189663;189664;189665;189666;189667	256416;256417;256418;256419;256420;256421;256422;256423;256424;256425;256426;256427;256428;256429;256430;256431;256432	256418			17	
LGGIPVGVVAVETR	0	Unmodified	1365.798	0.79799972	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	73.646	73.092	2	0.00032922	64589	160511_QHF_FH_JSI9i_2	79.82	55.969			0.6184	0.5909	59.223	2	1	Median	0.43	0.38873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88933	0.89822	NaN	1	1	Median	219020000	132850000	86170000	47500000	30019000	17481000	0	0	0	0	0	0	171520000	102830000	68690000	30606	2348	28964	189668;189669;189670	256433;256434;256435	256434			3	
LGGISSTEEMDLK	1	Unmodified	1378.665	0.66499622	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			52.678	52.275	2	0.024631	47150	160511_QHF_FH_JSI10i_1	48.944	30.72			0.94963	1.1139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94963	1.1139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52216000	29753000	22463000	0	0	0	52216000	29753000	22463000	0	0	0	0	0	0	30607	482	28965	189671	256436	256436			1	
LGGKLSSEDK	2	Unmodified	1032.5451	0.54513908	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	1	1	2	10.096	9.8105	2;3	0.00038998	7383	160511_QHF_FH_JSI11i_3	108.43	63.984			0.09085	0.080837	151	6	5	Median	0.56805	0.4645	232.12	2	1	Median	0.041244	0.046363	NaN	1	1	Median	0.047875	0.045847	NaN	1	1	Median	0.12834	0.12863	80.854	2	2	Median	1650600000	1482600000	167980000	312820000	248050000	64766000	421990000	407290000	14703000	434630000	412400000	22227000	481160000	414870000	66287000	30608	982	28966	189672;189673;189674;189675;189676;189677	256437;256438;256439;256440;256441;256442	256437			6	
LGGLDYMYSAQGNGGGPPRK	1	Unmodified	2036.9738	0.97380861	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			52.496	50.92	3	5.7226E-06	42536	160511_QHF_FH_JSI10i_3	76.768	59.279			1.2188	1.156	3.0507	2	0	Median	1.4351	1.1313	NaN	1	0	Median	1.0351	1.1812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69121000	30544000	38578000	30348000	11715000	18634000	38773000	18829000	19944000	0	0	0	0	0	0	30609	4157	28967	189678;189679	256443;256444	256443			2	
LGGLFLR	0	Unmodified	774.47521	0.47520902	2973	Q5THJ4	VPS13D	Vacuolar protein sorting-associated protein 13D	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			51.759	50.181	2	0.022376	41162	160511_QHF_FH_JSI9i_3	56.095	17.724			1.0898	1.0565	3.0137	2	0	Median	1.2712	1.0343	NaN	1	0	Median	0.9344	1.0793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146720000	71776000	74945000	80560000	33887000	46673000	66161000	37890000	28272000	0	0	0	0	0	0	30610	2973	28968	189680;189681	256445;256446	256446			2	
LGGLGAR	0	Unmodified	642.38131	0.38130863	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	7.869	7.5418	2	0.042081	9632	160511_QHF_FH_JSI10i_3	46.351	9.7641			0.91291	1.0723	31.291	7	0	Median	1.1164	0.94685	NaN	1	0	Median	0.91286	1.0973	3.2649	2	0	Median	1.4174	1.3913	20.487	2	0	Median	0.66799	0.71087	27.371	2	0	Median	1259600000	593890000	665680000	163910000	80557000	83351000	385930000	198660000	187270000	453220000	169780000	283440000	256520000	144890000	111620000	30611	4314	28969	189682;189683;189684;189685;189686;189687;189688	256447;256448	256448			2	
LGGLHFPK	1	Unmodified	867.49667	0.49667274	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	42.821	41.983	3	0.00072461	36814	160511_QHF_FH_JSI11i_3	67.032	58.259			1.023	1.0563	30.886	4	0	Median	1.7252	1.3629	NaN	1	0	Median	0.80068	0.92695	NaN	1	0	Median	1.3071	1.2037	NaN	1	0	Median	0.67422	0.67853	NaN	1	0	Median	670570000	334410000	336160000	165990000	66577000	99418000	124520000	64185000	60334000	150010000	69762000	80250000	230040000	133890000	96156000	30612	2469	28970	189689;189690;189691;189692;189693	256449;256450;256451;256452;256453;256454;256455;256456;256457;256458;256459;256460;256461;256462;256463;256464;256465;256466;256467	256452			19	
LGGLRPESPESLTSVSR	0	Unmodified	1783.9428	0.94282606	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.172	51.589	3	0.028471	42256	160511_QHF_FH_JSI9i_3	34.094	24.294			0.81166	0.67102	NaN	1	1	Median	0.81166	0.67102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28182000	19204000	8977800	28182000	19204000	8977800	0	0	0	0	0	0	0	0	0	30613	4744	28971	189694	256468	256468			1	
LGGLTQAPGNPVLAVQINQDK	1	Unmodified	2132.159	0.15896684	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.852	8	5	6							3	4	6	6	78.484	77.964	2;3	3.6595E-70	70619	160511_QHF_FH_JSI10i_1	227.67	179.11			0.79478	0.8585	19.79	19	4	Median	1.0688	0.87329	11.928	3	1	Median	0.7125	0.8491	17.729	4	1	Median	0.95956	0.94156	12.964	6	0	Median	0.64939	0.66328	14.892	6	2	Median	1410000000	737490000	672460000	93548000	41881000	51667000	331630000	182600000	149030000	462630000	204510000	258120000	522150000	308500000	213650000	30614	1274	28972	189695;189696;189697;189698;189699;189700;189701;189702;189703;189704;189705;189706;189707;189708;189709;189710;189711;189712;189713	256469;256470;256471;256472;256473;256474;256475;256476;256477;256478;256479;256480;256481;256482;256483;256484;256485;256486;256487;256488;256489;256490;256491;256492;256493;256494;256495;256496;256497;256498;256499;256500;256501;256502	256489			34	
LGGNEIVSFLK	1	Unmodified	1175.655	0.65502388	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							1	2	3	2	79.622	78.977	2	6.9975E-05	69584	160511_QHF_FH_JSI9i_2	108.47	89.199			0.80761	0.91569	21.608	8	1	Median	1.5751	1.3785	NaN	1	0	Median	0.7743	0.91569	7.1271	2	1	Median	1.0363	1.0515	15.85	3	0	Median	0.69282	0.73659	2.2007	2	0	Median	981880000	544960000	436920000	104210000	46437000	57770000	206000000	122190000	83810000	404480000	212090000	192390000	267200000	164250000	102950000	30615	445	28973	189714;189715;189716;189717;189718;189719;189720;189721	256503;256504;256505;256506;256507;256508;256509;256510;256511;256512	256507			10	
LGGNNTSEK	1	Unmodified	918.44067	0.44067401	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.2291	4.8874	2	0.0020179	2871	160511_QHF_FH_JSI10i_1	67.897	30.877			0.6628	0.70826	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6628	0.70826	NaN	1	0	Median	107800000	62946000	44855000	0	0	0	0	0	0	0	0	0	107800000	62946000	44855000	30616	2540	28974	189722;189723	256513;256514;256515	256515			3	
LGGNPGTNSR	0	Unmodified	971.47846	0.4784565	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0		By matching	By MS/MS		2.67	0.471		1	2								1	2		7.416	7.177	2	0.0025219	4949	160511_QHF_FH_JSI11i_3	59.368	39.806			1.0825	1.0012	4.6949	3	1	Median	NaN	NaN	NaN	0	0	Median	0.83709	0.97832	NaN	1	0	Median	1.0828	1.0354	4.7572	2	1	Median	NaN	NaN	NaN	0	0	Median	203390000	94981000	108410000	0	0	0	44969000	23854000	21115000	158420000	71127000	87294000	0	0	0	30617	3936	28975	189724;189725;189726	256516;256517	256516			2	
LGGNVVVSLEGKPL	1	Unmodified	1380.7977	0.79766537	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	74.914	73.928	2;3	0.0054951	65121	160511_QHF_FH_JSI9i_2	68.44	57.289			0.97291	1.0022	49.814	4	1	Median	1.8725	1.6197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4114	1.4025	NaN	1	0	Median	0.59606	0.64753	14.236	2	1	Median	123180000	61153000	62025000	27126000	9525300	17601000	0	0	0	46442000	17884000	28558000	49609000	33744000	15865000	30618	5500	28976	189727;189728;189729;189730	256518;256519;256520;256521;256522	256521			5	
LGGNYGPTVLVQQEALK	1	Unmodified	1785.9625	0.96249887	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		4	4							1		2	5	71.552	70.993	2;3	1.6872E-10	63268	160511_QHF_FH_JSI11i_3	138.42	115.7			1.0125	1.0341	47.554	6	3	Median	1.3153	1.0814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3533	1.2911	37.676	2	1	Median	0.78535	0.78747	50.429	3	2	Median	184150000	94167000	89982000	25946000	8170300	17776000	0	0	0	68823000	32910000	35912000	89381000	53087000	36294000	30619	286	28977	189731;189732;189733;189734;189735;189736;189737;189738	256523;256524;256525;256526;256527;256528;256529;256530;256531;256532	256523			9	
LGGPASR	0	Unmodified	656.36057	0.36057319	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	6.6931	6.552	2	0.032606	4458	160511_QHF_FH_JSI10i_3	51.036	0			0.72394	0.82672	31.126	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72394	0.82672	NaN	1	0	Median	1.0198	0.97878	NaN	1	0	Median	0.52374	0.53538	NaN	1	0	Median	1743500000	974160000	769350000	0	0	0	500540000	288110000	212430000	639680000	284970000	354720000	603290000	401090000	202200000	30620	3407	28978	189739;189740;189741	256533	256533			1	
LGGPQASLSTK	1	Unmodified	1057.5768	0.57677356	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	26.419	26.072	2	0.035048	21734	160511_QHF_FH_JSI11i_2	38.804	21.708			0.98818	1.0899	28.685	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0235	1.2299	NaN	1	0	Median	1.1471	1.1372	23.1	2	0	Median	0.68347	0.70622	NaN	1	0	Median	222250000	119530000	102730000	0	0	0	78766000	50151000	28616000	102060000	44878000	57178000	41431000	24497000	16934000	30621	5001	28979	189742;189743;189744;189745	256534	256534			1	
LGGQVMHDEFGEGTVTR	0	Unmodified	1831.8523	0.85229649	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		45.364	45.364	3	0.0038112	40063	160511_QHF_FH_JSI11i_3	48.848	37.568			1.5349	1.4089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5349	1.4089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31900000	9027600	22872000	0	0	0	0	0	0	31900000	9027600	22872000	0	0	0	30622	719	28980	189746	256535	256535			1	
LGGSAVISLEGK	1	Unmodified	1129.6343	0.63428844	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	3	2	2	51.918	51.103	2	1.3426E-05	43868	160511_QHF_FH_JSI12i_2	115.57	96.331			0.91661	0.9477	25.244	8	6	Median	1.0807	0.93603	NaN	1	1	Median	0.97959	1.1827	26.546	3	3	Plateau	1.0552	1.0488	12.578	2	2	Median	0.61372	0.64347	9.9268	2	0	Median	1422500000	796830000	625660000	185580000	91908000	93674000	437310000	247670000	189640000	362440000	193190000	169250000	437160000	264060000	173100000	30623	1236	28981	189747;189748;189749;189750;189751;189752;189753;189754	256536;256537;256538;256539;256540;256541;256542;256543;256544;256545;256546;256547	256538			12	
LGGSAVISLEGKPL	1	Unmodified	1339.7711	0.77111627	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.06	5	8	7						2	5	6	6	5	72.888	71.327	2;3	7.3055E-21	63787	160511_QHF_FH_JSI10i_2	179.19	159.41			1.0659	1.0365	24.671	21	0	Median	1.5372	1.2381	17.387	5	0	Median	0.82978	0.98459	15.13	6	0	Median	1.1589	1.1479	14.916	6	0	Median	0.64688	0.6864	12.166	4	0	Median	8804000000	4409300000	4394700000	1460300000	566820000	893490000	2185700000	1159800000	1026000000	2747300000	1210000000	1537300000	2410700000	1472700000	937910000	30624	1236	28982	189755;189756;189757;189758;189759;189760;189761;189762;189763;189764;189765;189766;189767;189768;189769;189770;189771;189772;189773;189774;189775;189776	256548;256549;256550;256551;256552;256553;256554;256555;256556;256557;256558;256559;256560;256561;256562;256563;256564;256565;256566;256567;256568;256569;256570;256571;256572;256573;256574;256575;256576;256577;256578;256579;256580;256581;256582;256583;256584;256585;256586;256587;256588;256589;256590;256591;256592;256593;256594;256595;256596;256597	256589			49	
LGGSLADSYLDEGFLLDK	1	Unmodified	1911.9466	0.94657403	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.828	5	4	4							2	3	3	5	100.55	100.47	2;3	7.8684E-82	88136	160511_QHF_FH_JSI9i_2	250.52	235.64			0.75891	0.78635	26.603	12	3	Median	1.1418	0.96382	18.042	2	0	Median	0.79456	0.93963	16.075	3	0	Median	1.0066	1.0231	21.537	3	1	Plateau	0.55163	0.5709	14.23	4	2	Median	1340300000	749610000	590680000	227680000	115220000	112460000	295640000	169340000	126300000	387060000	176970000	210090000	429920000	288090000	141830000	30625	2090	28983	189777;189778;189779;189780;189781;189782;189783;189784;189785;189786;189787;189788;189789	256598;256599;256600;256601;256602;256603;256604;256605;256606;256607;256608;256609;256610;256611;256612;256613;256614;256615;256616;256617;256618;256619	256611			22	
LGGSLADSYLDEGFLLDKK	2	Unmodified	2040.0415	0.041537049	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	2	3	90.09	89.924	2;3	1.2959E-42	77937	160511_QHF_FH_JSI12i_3	198.38	182.96			0.78525	0.83487	24.06	6	0	Median	1.2426	1.0884	NaN	1	0	Median	0.70464	0.86005	NaN	1	0	Median	0.9343	0.8696	9.9661	2	0	Median	0.60698	0.60544	10.14	2	0	Median	1915600000	1032600000	883000000	132730000	62201000	70527000	137670000	80239000	57435000	934990000	480910000	454070000	710170000	409210000	300970000	30626	2090	28984	189790;189791;189792;189793;189794;189795;189796	256620;256621;256622;256623;256624;256625;256626;256627;256628;256629;256630;256631	256629			12	
LGGSPFGPAGTGK	1	Unmodified	1144.5877	0.58767259	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.52	3	4	3					3		2	3	4	4	40.768	37.855	2	4.4778E-05	31560	160511_QHF_FH_JSI10i_3	113.69	91.45			0.99325	1.0263	22.508	13	2	Median	1.4951	1.2598	9.6323	2	0	Median	0.88405	1.0825	7.143	3	0	Median	1.1027	1.1001	19.332	4	1	Median	0.83925	0.88294	23.384	4	1	Median	2345800000	1099200000	1246600000	157300000	61991000	95306000	507070000	270800000	236280000	775560000	345040000	430520000	905830000	421340000	484480000	30627	2517	28985	189797;189798;189799;189800;189801;189802;189803;189804;189805;189806;189807;189808;189809	256632;256633;256634;256635;256636;256637;256638;256639;256640;256641;256642;256643;256644;256645;256646;256647;256648	256637			17	
LGGSPTSLGTWGSWIGPDHDK	1	Unmodified	2167.0334	0.033431979	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.11		3	19						5	10	10	5	2	82.373	79.772	2;3	6.9091E-71	68368	160511_QHF_FH_JSI10i_3	230.05	225.05			1.0964	1.0738	24.981	23	9	Median	1.4151	1.159	8.006	9	3	Median	0.73192	0.89931	19.627	7	3	Median	1.0964	0.95248	6.376	5	2	Plateau	0.54136	0.55893	9.8503	2	1	Median	5041700000	2532600000	2509000000	1219900000	477440000	742470000	1251400000	735350000	516000000	2134800000	1032300000	1102500000	435590000	287550000	148030000	30628	1050	28986	189810;189811;189812;189813;189814;189815;189816;189817;189818;189819;189820;189821;189822;189823;189824;189825;189826;189827;189828;189829;189830;189831;189832;189833;189834;189835;189836	256649;256650;256651;256652;256653;256654;256655;256656;256657;256658;256659;256660;256661;256662;256663;256664;256665;256666;256667;256668;256669;256670;256671;256672;256673;256674;256675;256676;256677;256678;256679;256680;256681;256682;256683;256684;256685;256686;256687;256688;256689;256690;256691;256692;256693;256694;256695;256696;256697;256698;256699	256657			51	
LGGSPTSLGTWGSWIGPDHDKFSAMK	2	Acetyl (K)	2773.317	0.3170004	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		88.421	79.092	3	1.1412E-42	44176	160513_QHF_FH_JSI11Kac_6	163.46	148.89			0.33843	0.32798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33843	0.32798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68151000	42349000	25803000	0	0	0	0	0	0	68151000	42349000	25803000	0	0	0	30629	1050	28987	189837	256700	256700	881		1	
LGGSQEDQIK	1	Unmodified	1073.5353	0.53530267	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				2	3	2	2	17.545	13.523	2	2.6586E-09	12555	160511_QHF_FH_JSI9i_1	127.76	93.512			0.80972	0.93547	35.39	9	1	Median	1.5828	1.2724	1.0979	2	0	Median	0.78204	0.93547	0.35419	3	0	Median	1.0638	1.0421	15.28	2	0	Median	0.47736	0.50876	20.264	2	1	Median	4406000000	2237100000	2168900000	1087300000	387060000	700280000	1284100000	701870000	582280000	882130000	453290000	428840000	1152400000	694890000	457530000	30630	1471	28988	189838;189839;189840;189841;189842;189843;189844;189845;189846	256701;256702;256703;256704;256705;256706;256707;256708;256709;256710;256711;256712;256713;256714;256715	256715			15	
LGGTCVNVGCVPK	1	Unmodified	1359.6639	0.66389078	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		43.436	43.037	2	0.0028574	38642	160511_QHF_FH_JSI10i_1	64.439	40.349			0.91723	0.96331	29.873	2	2	Median	NaN	NaN	NaN	0	0	Median	1.038	1.1899	NaN	1	1	Median	0.81048	0.77988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87524000	44679000	42845000	0	0	0	35612000	16621000	18991000	51912000	28058000	23854000	0	0	0	30631	765	28989	189847;189848	256716;256717	256717			2	
LGGTIDDCELVEGLVLTQK	1	Unmodified	2059.0507	0.050721527	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		98.403	98.238	3	0.00013968	89202	160511_QHF_FH_JSI11i_1	64.83	59.621			0.71507	0.68617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71507	0.68617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37461000	19779000	17681000	0	0	0	0	0	0	37461000	19779000	17681000	0	0	0	30632	1722	28990	189849	256718	256718			1	
LGGYLAEEQATPENPTIRK	1	Unmodified	2086.0695	0.069483134	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		49.328	48.283	3	1.0621E-10	40251	160511_QHF_FH_JSI10i_3	120.9	111.62			1.4326	1.3395	24.407	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.8372	0.97116	22.403	2	2	Median	1.4326	1.3395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174000000	79144000	94860000	0	0	0	124060000	60464000	63593000	49947000	18680000	31268000	0	0	0	30633	486	28991	189850;189851;189852	256719;256720;256721;256722;256723;256724	256722			6	
LGHAETDEQLQNIISK	1	Unmodified	1794.9112	0.91119158	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	1	3	4	52.768	52.404	2;3	1.0114E-18	44906	160511_QHF_FH_JSI12i_3	204.86	172.25			0.79531	0.86251	42.545	8	6	Median	1.58	1.3447	NaN	1	1	Median	0.7518	0.93512	NaN	1	0	Median	1.1159	1.0605	40.657	2	1	Median	0.58047	0.58746	40.758	4	4	Median	1383000000	738180000	644820000	83549000	34642000	48907000	216220000	116590000	99625000	308600000	148420000	160180000	774640000	438530000	336110000	30634	2997	28992	189853;189854;189855;189856;189857;189858;189859;189860;189861	256725;256726;256727;256728;256729;256730;256731;256732;256733;256734;256735;256736	256734			12	
LGHEEQQK	1	Unmodified	967.47231	0.47230849	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.32	1	8	2					3		2	2	5	5	3.8988	1.3448	2;3	8.6252E-05	1963	160511_QHF_FH_JSI12i_2	107.29	70.9			0.76686	0.80158	106.84	12	6	Median	1.6909	1.4231	65.715	2	1	Median	0.55458	0.6455	24.106	2	1	Median	0.92007	0.90983	144.42	4	1	Median	0.51216	0.56947	111.26	4	3	Median	1733600000	929290000	804350000	454570000	162040000	292520000	511530000	281450000	230080000	96259000	35319000	60941000	671290000	450480000	220800000	30635	2524	28993	189862;189863;189864;189865;189866;189867;189868;189869;189870;189871;189872;189873;189874;189875	256737;256738;256739;256740;256741;256742;256743;256744;256745;256746;256747;256748	256739			12	
LGHGEEELETEK	1	Unmodified	1369.6361	0.63613893	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	18.515	18.296	2;3	4.9178E-05	14855	160511_QHF_FH_JSI12i_3	66.498	60.655			0.86968	0.87474	33.322	6	3	Median	NaN	NaN	NaN	0	0	Median	0.57199	0.69397	NaN	1	0	Median	1.0315	0.97413	14.265	3	2	Median	0.5985	0.6214	45.212	2	1	Median	186400000	105150000	81259000	0	0	0	20919000	11828000	9091100	90677000	43407000	47270000	74809000	49912000	24897000	30636	408	28994	189876;189877;189878;189879;189880;189881	256749;256750;256751;256752;256753	256752			5	
LGHGLLSGEYSK	1	Unmodified	1259.651	0.65100113	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	35.482	34.795	2;3	1.1194E-05	30279	160511_QHF_FH_JSI11i_3	85.288	80.823			0.83766	0.98322	54.769	9	1	Median	1.5177	1.2313	14.048	2	0	Median	0.82324	0.98149	0.24903	2	0	Median	1.3746	1.2791	108.43	2	0	Median	0.64758	0.66272	70.386	3	1	Median	1263700000	643150000	620570000	279570000	123250000	156320000	292120000	128200000	163920000	235710000	103170000	132540000	456320000	288530000	167790000	30637	1573	28995	189882;189883;189884;189885;189886;189887;189888;189889;189890	256754;256755;256756;256757;256758;256759;256760;256761;256762;256763;256764;256765;256766	256756			13	
LGHGLLSGQYSKPPVK	2	Unmodified	1679.9359	0.93589019	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.09	40.57	3	0.029201	33828	160511_QHF_FH_JSI10i_3	37.083	25.813			0.76438	0.88781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76438	0.88781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24574000	13376000	11198000	0	0	0	24574000	13376000	11198000	0	0	0	0	0	0	30638	3920	28996	189891	256767	256767			1	
LGHILVVDEADK	1	Unmodified	1307.7085	0.70851601	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	46.248	46.087	2;3	1.4059E-05	39277	160511_QHF_FH_JSI12i_3	97.214	87.782			0.50569	0.52111	31.041	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33449	0.30493	NaN	1	1	Median	0.51357	0.52202	0.24913	2	1	Median	154380000	109960000	44428000	0	0	0	0	0	0	40698000	29585000	11113000	113690000	80371000	33316000	30639	15	28997	189892;189893;189894	256768;256769;256770;256771	256769			4	
LGHPEALSAGTGSPQPPSFTYAQQR	0	Unmodified	2596.267	0.26701374	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	3	2	2	1	59.654	57.837	3	1.713E-42	48309	160511_QHF_FH_JSI10i_3	187.19	184.04			1.2737	1.2436	45.707	8	1	Median	2.1467	1.7645	12.438	3	1	Median	0.89559	1.0524	2.1373	2	0	Median	1.2737	1.2436	12.077	2	0	Median	0.41723	0.43234	NaN	1	0	Median	1190500000	556780000	633700000	328310000	114630000	213680000	589410000	307660000	281750000	233810000	108980000	124830000	38938000	25500000	13438000	30640	2723	28998	189895;189896;189897;189898;189899;189900;189901;189902	256772;256773;256774;256775;256776;256777;256778;256779;256780;256781;256782;256783;256784;256785;256786;256787;256788;256789;256790	256776			19	
LGHSFSLVGNK	1	Unmodified	1157.6193	0.61930707	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	4	3	3	39.714	36.703	2;3	2.2626E-10	29852	160511_QHF_FH_JSI9i_3	110.53	85.295			1.0384	1.1254	52.612	12	3	Median	1.5431	1.218	42.304	3	1	Plateau	0.73403	0.89283	26.275	3	2	Median	1.4193	1.3607	16.309	3	0	Median	0.45411	0.46432	6.5797	3	0	Plateau	2069700000	961320000	1108300000	598610000	220740000	377870000	498810000	247730000	251080000	555610000	239360000	316250000	416620000	253490000	163130000	30641	1743	28999	189903;189904;189905;189906;189907;189908;189909;189910;189911;189912;189913;189914;189915	256791;256792;256793;256794;256795;256796;256797;256798;256799;256800;256801;256802;256803;256804;256805;256806;256807;256808;256809;256810;256811	256804			21	
LGHTDILVGVK	1	Unmodified	1150.671	0.67100829	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		43.621	43.621	3	0.00054766	38477	160511_QHF_FH_JSI11i_3	72.2	59.987			0.28225	0.26017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28225	0.26017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	365470000	304970000	60495000	0	0	0	0	0	0	365470000	304970000	60495000	0	0	0	30642	2607	29000	189916	256812	256812			1	
LGHVVMGNNAVSPYQQVIEK	1	Oxidation (M)	2198.1154	0.11538747	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	3	3	1	3	54.035	52.014	3	5.8826E-12	45976	160511_QHF_FH_JSI11i_3	138.66	129.48			0.79022	0.90388	36.634	8	5	Median	1.4094	1.1755	33.225	2	1	Median	0.77847	0.88558	10.77	3	2	Median	0.96086	0.92255	NaN	1	0	Median	0.47201	0.49957	16.549	2	2	Median	611030000	326020000	285010000	164210000	58073000	106140000	207590000	120620000	86971000	177970000	101500000	76472000	61260000	45826000	15434000	30643	1909	29001	189917;189918;189919;189920;189921;189922;189923;189924;189925;189926	256813;256814;256815;256816;256817;256818;256819;256820;256821;256822;256823;256824;256825;256826;256827;256828;256829	256813		1568	17	
LGHVVMGNNAVSPYQQVIEK	1	Unmodified	2182.1205	0.12047285	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.09		4	8						5	4	4	4	5	63.565	60.088	2;3	4.1801E-54	53282	160511_QHF_FH_JSI11i_3	258.81	237.51			0.96266	1.0858	31.11	15	3	Median	1.6043	1.4685	11.428	4	0	Linear	0.84023	0.99299	15.581	4	0	Median	0.93248	0.89781	10.105	4	1	Median	0.4521	0.46116	45.212	3	2	Plateau	4974000000	2400000000	2574000000	1334200000	481390000	852780000	1587900000	785870000	802060000	1597100000	810800000	786250000	454840000	321920000	132920000	30644	1909	29001	189927;189928;189929;189930;189931;189932;189933;189934;189935;189936;189937;189938;189939;189940;189941;189942;189943	256830;256831;256832;256833;256834;256835;256836;256837;256838;256839;256840;256841;256842;256843;256844;256845;256846;256847;256848;256849;256850;256851;256852;256853;256854;256855;256856;256857;256858;256859;256860;256861;256862;256863;256864;256865;256866	256833			37	
LGHYATQLQK	1	Unmodified	1157.6193	0.61930707	1530	P42229	STAT5A	Signal transducer and activator of transcription 5A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			21.933	20.729	3	0.012016	16891	160511_QHF_FH_JSI10i_3	43.651	34.329			0.90474	1.0414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90474	1.0414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38467000	22847000	15619000	0	0	0	38467000	22847000	15619000	0	0	0	0	0	0	30645	1530	29002	189944	256867	256867			0	
LGIADGMLQTGVTVGSK	1	Unmodified	1645.8709	0.87090667	3802	Q8WWV3	RTN4IP1	Reticulon-4-interacting protein 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.801	77.168	2	0.024827	67787	160511_QHF_FH_JSI11i_2	42.556	28.893			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30646	3802	29003	189945	256868	256868			1	
LGIDVNR	0	Unmodified	785.43955	0.43955179	5407	Q9ULQ0	STRIP2	Striatin-interacting protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			21.435	20.231	2	0.041662	16555	160511_QHF_FH_JSI10i_3	49.211	11.258			1.4013	1.6282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4013	1.6282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119620000	51982000	67642000	0	0	0	119620000	51982000	67642000	0	0	0	0	0	0	30647	5407	29004	189946	256869	256869			1	
LGIEGLSLHNVLK	1	Unmodified	1391.8136	0.81364979	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	3	3	3	79.679	78.921	2;3	1.225E-10	70348	160511_QHF_FH_JSI11i_3	161.67	130.87			1.0528	1.0784	27.868	13	4	Median	1.6124	1.3391	15.049	4	1	Median	0.92428	1.0784	16.153	3	1	Median	1.0542	1.015	8.3359	3	1	Plateau	0.64056	0.65863	6.1222	3	1	Plateau	1014700000	503040000	511690000	85018000	32434000	52584000	162850000	78503000	84349000	333340000	138130000	195220000	433520000	253980000	179540000	30648	5135	29005	189947;189948;189949;189950;189951;189952;189953;189954;189955;189956;189957;189958;189959	256870;256871;256872;256873;256874;256875;256876;256877;256878;256879;256880;256881;256882;256883;256884;256885;256886;256887;256888	256873			19	
LGIFENLNK	1	Unmodified	1046.576	0.57604528	2451	Q13613	MTMR1	Myotubularin-related protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.205	63.062	2	0.0029291	54406	160511_QHF_FH_JSI12i_3	62.546	31.317			0.67398	0.6578	76.938	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2132	1.1334	NaN	1	1	Median	0.37442	0.38179	NaN	1	0	Median	146650000	99198000	47454000	0	0	0	0	0	0	49552000	24519000	25033000	97100000	74679000	22421000	30649	2451	29006	189960;189961	256889;256890;256891	256890			3	
LGIFWVSCEAGTYIR	0	Unmodified	1770.8763	0.8763264	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.817	81.468	2	0.015869	45619	160513_QHF_FH_JSI11Kac_6	72.958	50.76			1.0605	1.042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0605	1.042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19824000	10101000	9723600	0	0	0	0	0	0	19824000	10101000	9723600	0	0	0	30650	453	29007	189962	256892	256892			1	
LGIGIVPGLVHK	1	Unmodified	1201.7547	0.75467834	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		72.53	71.067	3	0.0022461	59630	160511_QHF_FH_JSI10i_3	48.741	33.539			1.127	1.1514	38.404	2	0	Median	1.7628	1.5106	NaN	1	0	Median	0.7205	0.87758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15892000	6903400	8988200	9217900	3032500	6185400	6673600	3870900	2802700	0	0	0	0	0	0	30651	4945	29008	189963;189964;189965	256893;256894;256895;256896	256895			4	
LGIGQSQEMNTLFR	0	Unmodified	1592.7981	0.79807608	3132	Q6PKG0	LARP1	La-related protein 1	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	73.781	73.361	2	0.00023504	64314	160511_QHF_FH_JSI11i_2	86.114	66.353			0.80984	0.86648	27.336	4	1	Median	NaN	NaN	NaN	0	0	Median	0.80435	0.97049	NaN	1	0	Median	1.0047	0.9807	33.542	2	0	Median	0.66234	0.66451	NaN	1	1	Median	320380000	179260000	141120000	0	0	0	75290000	44532000	30758000	190430000	104400000	86033000	54661000	30328000	24333000	30652	3132	29009	189966;189967;189968;189969	256897;256898;256899	256898			3	
LGIHEDSQNR	0	Unmodified	1167.5632	0.56324876	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.13	6.6	1	8	6					8	8	6	8	9	8	13.905	9.3385	2;3	7.3017E-11	8195	160511_QHF_FH_JSI12i_3	144.09	111.2			0.92171	1.0515	31.673	31	0	Median	1.6618	1.3953	10.003	6	0	Median	0.83551	1.0097	5.0467	8	0	Median	1.097	1.0892	6.1158	9	0	Median	0.56426	0.52823	11.001	8	0	Plateau	19303000000	10533000000	8770300000	2327700000	818160000	1509500000	3621800000	1997200000	1624600000	7581200000	4013900000	3567300000	5772300000	3703300000	2068900000	30653	880	29010	189970;189971;189972;189973;189974;189975;189976;189977;189978;189979;189980;189981;189982;189983;189984;189985;189986;189987;189988;189989;189990;189991;189992;189993;189994;189995;189996;189997;189998;189999;190000	256900;256901;256902;256903;256904;256905;256906;256907;256908;256909;256910;256911;256912;256913;256914;256915;256916;256917;256918;256919;256920;256921;256922;256923;256924;256925;256926;256927;256928;256929;256930;256931;256932;256933;256934;256935;256936;256937;256938;256939;256940;256941;256942;256943;256944;256945;256946;256947	256940			48	
LGIHEDSQNRK	1	Unmodified	1295.6582	0.65821178	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.92		13	14						5	11	10	5	6	9.6082	8.254	2;3;4	6.717E-10	5984	160511_QHF_FH_JSI11i_3	128.03	107.83			0.77687	0.74837	41.228	29	8	Median	1.5845	1.2702	18.73	10	2	Median	0.60565	0.70414	21.669	9	2	Median	0.7867	0.76816	15.841	5	0	Median	0.49534	0.50134	23.549	5	4	Median	13550000000	6719200000	6830800000	4322800000	1439800000	2883000000	5317700000	3220900000	2096900000	3401100000	1717900000	1683200000	508330000	340590000	167740000	30654	880	29011	190001;190002;190003;190004;190005;190006;190007;190008;190009;190010;190011;190012;190013;190014;190015;190016;190017;190018;190019;190020;190021;190022;190023;190024;190025;190026;190027;190028;190029;190030;190031;190032	256948;256949;256950;256951;256952;256953;256954;256955;256956;256957;256958;256959;256960;256961;256962;256963;256964;256965;256966;256967;256968;256969;256970;256971;256972;256973;256974;256975;256976;256977;256978;256979;256980;256981;256982;256983;256984;256985;256986;256987;256988;256989;256990;256991;256992;256993;256994;256995;256996;256997;256998;256999;257000	256949			51	
LGIHEDSTNR	0	Unmodified	1140.5523	0.55234972	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.64	5	8	8				1	11	8	8	13	11	9	15.374	10.924	2;3	2.1831E-14	9077	160511_QHF_FH_JSI12i_3	164.96	147.72			0.87071	0.99125	29.232	41	0	Median	1.6383	1.3923	10.8	8	0	Median	0.80467	0.94234	6.9204	13	0	Median	1.1324	1.0859	7.5133	11	0	Median	0.55809	0.58251	5.7436	9	0	Median	58246000000	31402000000	26844000000	8661600000	3347700000	5313900000	9359600000	5696400000	3663200000	23163000000	11147000000	12016000000	17062000000	11211000000	5851200000	30655	898	29012	190033;190034;190035;190036;190037;190038;190039;190040;190041;190042;190043;190044;190045;190046;190047;190048;190049;190050;190051;190052;190053;190054;190055;190056;190057;190058;190059;190060;190061;190062;190063;190064;190065;190066;190067;190068;190069;190070;190071;190072;190073	257001;257002;257003;257004;257005;257006;257007;257008;257009;257010;257011;257012;257013;257014;257015;257016;257017;257018;257019;257020;257021;257022;257023;257024;257025;257026;257027;257028;257029;257030;257031;257032;257033;257034;257035;257036;257037;257038;257039;257040;257041;257042;257043;257044;257045;257046;257047;257048;257049;257050;257051;257052;257053;257054;257055;257056;257057;257058;257059;257060;257061;257062;257063;257064;257065;257066;257067	257057			67	
LGIHEDSTNRR	0	Unmodified	1296.6535	0.65346075	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			10.583	9.9023	2;3;4	3.3601E-05	7470	160511_QHF_FH_JSI9i_3	67.08	58.567			1.3345	1.0806	23.977	5	0	Median	1.4321	1.1528	3.5465	3	0	Plateau	0.63201	0.74185	14.466	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	464250000	212720000	251530000	304680000	115720000	188960000	159570000	97002000	62571000	0	0	0	0	0	0	30656	898	29013	190074;190075;190076;190077;190078	257068;257069;257070;257071;257072;257073	257071			6	
LGIHSALLDEK	1	Unmodified	1194.6608	0.66083754	3302	Q86SX6	GLRX5	Glutaredoxin-related protein 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	48.806	48.06	2;3	4.5859E-10	40297	160511_QHF_FH_JSI10i_3	113.22	80.895			0.88974	0.95468	27.14	7	2	Median	1.7442	1.4209	NaN	1	1	Median	0.8755	1.0148	8.6389	2	1	Median	1.0323	0.97663	6.4973	2	0	Median	0.62353	0.66761	10.479	2	0	Median	689750000	353090000	336670000	35828000	14462000	21366000	100150000	50581000	49572000	246710000	114640000	132070000	307060000	173410000	133660000	30657	3302	29014	190079;190080;190081;190082;190083;190084;190085;190086	257074;257075;257076;257077;257078;257079;257080;257081;257082;257083;257084	257077			11	
LGIIGVVNR	0	Unmodified	939.58655	0.58655038	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				67.652	56.993	2	0.061708	29828	160513_QHF_FH_JSI9Kac_5	34.808	8.2057			1.359	1.1551	NaN	1	0	Median	1.359	1.1551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6831400	2427100	4404300	6831400	2427100	4404300	0	0	0	0	0	0	0	0	0	30658	133	29015	190087	257085	257085			1	
LGILTHLYR	0	Unmodified	1084.6393	0.63931423	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			65.148	56.614	3	0.00025718	31135	160513_QHF_FH_JSI10Kac_6	74.464	35.16			1.2185	1.2091	40.451	2	0	Median	1.8919	1.6094	NaN	1	0	Median	0.78478	0.9083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80908000	38937000	41971000	26197000	8092400	18104000	54711000	30844000	23867000	0	0	0	0	0	0	30659	5338	29016	190088;190089	257086;257087	257087			2	
LGINSLQELK	1	Unmodified	1113.6394	0.63937381	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	3.46	5	4	4					1		2	4	4	4	64.864	63.202	2	8.3735E-11	55784	160511_QHF_FH_JSI9i_2	142.43	86.897			1.0011	1.1177	30.997	11	2	Median	1.4303	1.182	7.9053	2	0	Median	0.72558	0.88943	14.586	3	1	Plateau	1.1216	1.1425	18.632	3	1	Plateau	0.554	0.62314	15.451	3	0	Median	5164200000	2698000000	2466300000	674740000	316830000	357910000	1109500000	632130000	477390000	2017600000	925010000	1092600000	1362300000	824000000	538330000	30660	1858	29017	190090;190091;190092;190093;190094;190095;190096;190097;190098;190099;190100;190101;190102;190103	257088;257089;257090;257091;257092;257093;257094;257095;257096;257097;257098;257099;257100;257101;257102;257103;257104;257105;257106;257107;257108;257109;257110;257111;257112	257103			25	
LGIPDAVSYIK	1	Unmodified	1174.6598	0.6597749	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		78.047	77.799	2	0.025705	70727	160511_QHF_FH_JSI11i_1	40.724	19.822			0.7005	0.72791	32.316	2	0	Median	NaN	NaN	NaN	0	0	Median	0.52069	0.57921	NaN	1	0	Median	0.9424	0.91479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35363000	20394000	14969000	0	0	0	18889000	11444000	7444500	16474000	8949700	7524600	0	0	0	30661	615	29018	190104;190105	257113	257113			1	
LGIPYDPIQWSTDQVLHWVVWVMK	1	Unmodified	2909.4938	0.49384256	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.43	95.969	3	3.9905E-52	54580	160513_QHF_FH_JSI9Kac_6	175.77	150.84			1.1872	1.1942	31.866	2	0	Median	1.7667	1.496	NaN	1	0	Median	0.7978	0.95325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	779520000	425470000	354050000	161120000	65719000	95397000	618400000	359750000	258650000	0	0	0	0	0	0	30662	2245	29019	190106;190107	257114;257115;257116;257117	257114			4	
LGIQTDDK	1	Unmodified	888.45526	0.45526144	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.517	20.334	2	0.0086047	17268	160511_QHF_FH_JSI9i_1	66.504	34.362			1.7867	1.4559	NaN	1	1	Median	1.7867	1.4559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277450000	92512000	184940000	277450000	92512000	184940000	0	0	0	0	0	0	0	0	0	30663	765	29020	190108	257118	257118			1	
LGISPLMLAAMNGHTAAVK	1	Unmodified	1894.0169	0.016859398	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	87.774	87.171	3	3.3368E-10	73013	160511_QHF_FH_JSI10i_3	119.8	110.01			1.0151	1.0609	30.324	4	2	Median	1.3569	1.1224	NaN	1	1	Median	0.88028	1.0192	NaN	1	1	Median	1.1706	1.1043	NaN	1	0	Median	0.59007	0.59293	NaN	1	0	Median	238280000	123450000	114830000	45592000	20282000	25310000	45543000	23349000	22194000	84814000	36439000	48375000	62334000	43380000	18953000	30664	489	29021	190109;190110;190111;190112	257119;257120;257121;257122	257120			4	
LGISPLMLAAMNGHVPAVK	1	Unmodified	1918.0532	0.053244904	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	98.579	98.472	3	6.7342E-05	79959	160511_QHF_FH_JSI9i_3	59.502	49.163			0.87345	0.84094	27.984	4	0	Median	0.99101	0.80784	NaN	1	0	Median	0.76983	0.8754	NaN	1	0	Median	0.99508	0.94331	NaN	1	0	Median	0.47899	0.50656	NaN	1	0	Median	210590000	113290000	97303000	60251000	27365000	32886000	34503000	20599000	13904000	56885000	25372000	31513000	58951000	39951000	19000000	30665	3434	29022	190113;190114;190115;190116	257123;257124;257125	257124			3	
LGISTFWSLEK	1	Unmodified	1279.6812	0.68123863	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				94.444	93.418	2	0.041697	76338	160511_QHF_FH_JSI9i_3	45.137	29.876			1.8424	1.5786	NaN	1	1	Median	1.8424	1.5786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9177000	2543900	6633100	9177000	2543900	6633100	0	0	0	0	0	0	0	0	0	30666	2621	29023	190117	257126	257126			1	
LGITQLR	0	Unmodified	799.49159	0.49158736	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.149	40.149	2	0.049359	35274	160511_QHF_FH_JSI11i_3	43	0			0.96846	0.92079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96846	0.92079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	207780000	105230000	102550000	0	0	0	0	0	0	207780000	105230000	102550000	0	0	0	30667	5502	29024	190118	257127	257127			1	
LGIWGEGTPFR	0	Unmodified	1231.635	0.63495714	16	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	79.171	77.794	2	0.010327	67576	160511_QHF_FH_JSI12i_3	47.187	28.407			0.90455	1.0509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90455	1.0509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32741000	16272000	16469000	0	0	0	32741000	16272000	16469000	0	0	0	0	0	0	30668	16	29025	190119;190120	257128;257129	257129			2	
LGIWGGNVALDNLQIK	1	Unmodified	1709.9465	0.94645487	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.481	99.5	3	1.1827E-05	86228	160511_QHF_FH_JSI12i_3	82.55	56.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30669	3196	29026	190121	257130	257130			1	
LGIYEAMK	1	Unmodified	923.47864	0.47863942	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	48.642	47.682	2	0.044814	40793	160511_QHF_FH_JSI12i_2	38.419	4.032			0.83002	0.90102	28.133	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0707	1.0993	NaN	1	0	Median	0.64346	0.73848	NaN	1	0	Median	817280000	490130000	327150000	0	0	0	0	0	0	507160000	297560000	209590000	310120000	192570000	117560000	30670	1085	29027	190122;190123	257131;257132;257133	257131			3	
LGIYTVLFER	0	Unmodified	1209.6758	0.67575932	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			3						3	2	2	2		89.527	85.247	2	0.00023168	44722	160513_QHF_FH_JSI10Kac_6	93.178	63.368			1.1188	1.1362	30.244	6	1	Median	2.1788	1.7977	1.4424	2	1	Median	0.88218	1.0317	4.3831	2	0	Median	1.1188	1.0381	22.042	2	0	Median	NaN	NaN	NaN	0	0	Median	1182400000	551760000	630660000	245990000	86482000	159500000	666970000	348940000	318030000	269460000	116340000	153120000	0	0	0	30671	2198	29028	190124;190125;190126;190127;190128;190129	257134;257135;257136;257137;257138;257139	257139			6	
LGKDPNTYFIVGTAMVYPEEAEPK	2	Unmodified	2668.3095	0.30945541	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.609	88.499	3	0.0015173	76802	160511_QHF_FH_JSI12i_3	43.523	36.492			0.66215	0.70965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66215	0.70965	NaN	1	1	Median	19214000	13090000	6123700	0	0	0	0	0	0	0	0	0	19214000	13090000	6123700	30672	2734	29029	190130	257140;257141	257140			2	
LGLAKSIHHAR	1	Acetyl (K)	1243.7149	0.71493879	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									5		2	3		33.635	24.69	3;4	0.00024853	13979	160513_QHF_FH_JSI10Kac_6	78.136	65.506			0.17659	0.17171	175.01	4	1	Linear	NaN	NaN	NaN	0	0	Median	3.46	4.007	130.1	2	1	Median	0.26602	0.25943	5.6287	2	0	Median	NaN	NaN	NaN	0	0	Median	86316000	56143000	30173000	0	0	0	28399000	8441400	19958000	57917000	47702000	10215000	0	0	0	30673	1593	29030	190131;190132;190133;190134;190135	257142;257143;257144;257145;257146	257145	1618		5	
LGLALNFSVFHYEIANSPEEAISLAK	1	Unmodified	2832.4698	0.46979588	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	95.911	87.802	2;3;4	0	47187	160513_QHF_FH_JSI12Kac_6	319.88	295.05			0.80717	0.91278	29.511	9	0	Median	1.2757	1.0724	21.049	2	0	Median	0.76935	0.91278	2.2047	3	0	Median	1.0407	0.98774	14.065	2	0	Median	0.50298	0.52687	7.6582	2	0	Median	6771500000	3747700000	3023800000	1290900000	586440000	704460000	1835000000	1068300000	766640000	1976600000	968160000	1008500000	1669000000	1124700000	544250000	30674	1385	29031	190136;190137;190138;190139;190140;190141;190142;190143;190144	257147;257148;257149;257150;257151;257152;257153;257154;257155;257156;257157;257158;257159;257160;257161;257162;257163	257156			17	
LGLALNFSVFYYEILNSPDR	0	Unmodified	2330.1947	0.19468365	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15	2				1					4	1	3	1		111.47	104.06	3	6.1692E-06	63560	160513_QHF_FH_JSI10Kac_6	96.487	86.907			0.57936	0.62398	32.333	2	2	Median	NaN	NaN	NaN	0	0	Median	0.67413	0.78426	NaN	1	1	Median	0.49791	0.49645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6676700	4846200	1830500	0	0	0	5598100	3991700	1606400	1078600	854540	224070	0	0	0	30675	1990	29032	190145;190146;190147;190148;190149	257164;257165;257166;257167;257168;257169	257169			6	
LGLALNFSVFYYEILNSPEK	1	Unmodified	2316.2042	0.2041857	2051;1384	P31946;P63104	YWHAB;YWHAZ	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.8	2.88			1	10	3	2			21	2	23	12		107.22	100.29	2;3	1.2879E-43	61829	160513_QHF_FH_JSI10Kac_6	183.6	152.21			0.85952	0.9881	24.692	21	11	Median	2.047	1.6997	NaN	1	1	Median	0.858	1.008	14.829	13	8	Median	0.94013	0.92794	30.475	7	2	Median	NaN	NaN	NaN	0	0	Median	437160000	251820000	185340000	5951600	1343900	4607800	413810000	240080000	173730000	17393000	10392000	7000600	0	0	0	30676	1384;2051	29033	190150;190151;190152;190153;190154;190155;190156;190157;190158;190159;190160;190161;190162;190163;190164;190165;190166;190167;190168;190169;190170;190171;190172;190173;190174;190175;190176;190177;190178;190179;190180;190181;190182;190183;190184;190185;190186	257170;257171;257172;257173;257174;257175;257176;257177;257178;257179;257180;257181;257182;257183;257184;257185;257186;257187;257188;257189;257190;257191;257192;257193;257194;257195;257196;257197;257198;257199;257200;257201;257202;257203;257204;257205;257206;257207;257208;257209;257210;257211;257212;257213;257214	257211			45	
LGLALNYSVFYYEIQNAPEQACHLAK	1	Unmodified	3011.4851	0.48512836	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	94.334	85.96	3;4	5.0323E-198	46275	160513_QHF_FH_JSI12Kac_6	299.48	290.57			0.93554	1.0061	18.619	8	0	Median	1.4415	1.2509	4.8214	2	0	Median	0.92608	1.0957	1.9964	2	0	Median	0.96042	0.90881	4.301	2	0	Median	0.76252	0.79837	3.845	2	0	Median	5065900000	2522600000	2543400000	681400000	308960000	372440000	1602400000	749550000	852860000	1716100000	864650000	851470000	1066000000	599400000	466620000	30677	1976	29034	190187;190188;190189;190190;190191;190192;190193;190194	257215;257216;257217;257218;257219;257220;257221;257222;257223;257224;257225;257226;257227;257228;257229	257224			15	
LGLAPQIQDLYGK	1	Unmodified	1414.782	0.78201531	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.8	4	2						1		1	1	3	2	79.149	77.108	2;3	9.7452E-05	71235	160511_QHF_FH_JSI12i_1	104.43	72.94			1.0035	0.99113	35.96	7	1	Median	2.0049	1.6321	NaN	1	0	Median	0.87513	1.0541	NaN	1	0	Median	1.016	0.99113	35.244	3	1	Median	0.71514	0.76964	29.747	2	0	Median	716980000	337300000	379680000	55708000	19244000	36464000	291000000	128730000	162260000	246990000	117580000	129410000	123280000	71737000	51539000	30678	1600	29035	190195;190196;190197;190198;190199;190200;190201	257230;257231;257232;257233;257234;257235	257232			5	
LGLCFSWDREITTCLPDYYK	1	Unmodified	2536.1767	0.1766671	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By matching		2.33	0.471		2	1							2		1		100.84	100.7	3	0.023053	81640	160511_QHF_FH_JSI9i_3	33.667	17.56			0.90533	0.77468	44.243	3	1	Median	1.2165	1.0146	38.151	2	1	Median	NaN	NaN	NaN	0	0	Median	0.55253	0.55271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	263940000	132240000	131700000	183660000	89591000	94068000	0	0	0	80280000	42651000	37628000	0	0	0	30679	2610	29036	190202;190203;190204	257236;257237	257236			2	
LGLDYEER	0	Unmodified	993.47673	0.47672516	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.66	4	4	1				1	2		3	3	3	3	41.619	37.878	2	0.00093466	32481	160511_QHF_FH_JSI12i_2	96.253	46.894			1.004	1.1789	40.384	10	0	Median	1.9335	1.5735	33.067	3	0	Median	1.004	1.1789	0.98456	2	0	Median	1.115	1.0903	20.75	2	0	Median	0.65162	0.73406	13.574	3	0	Median	4326300000	2063000000	2263400000	1119700000	338820000	780910000	1129500000	565450000	564020000	821810000	389370000	432450000	1255300000	769320000	486010000	30680	4296	29037	190205;190206;190207;190208;190209;190210;190211;190212;190213;190214;190215;190216	257238;257239;257240;257241;257242;257243;257244;257245;257246;257247;257248	257240			11	
LGLEALAANHQQLFTDGR	0	Unmodified	1953.0068	0.0068232975	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		7	7							2	5	4	3	76.502	75.818	2;3	4.1395E-66	65797	160511_QHF_FH_JSI12i_3	264	243.34			0.89937	1.1168	20.427	13	3	Median	1.466	1.2524	9.7035	2	0	Median	0.94564	1.1357	10.388	4	3	Linear	1.2228	1.3265	7.0472	4	0	Linear	0.75292	0.77497	7.7791	3	0	Median	1393000000	657370000	735640000	115820000	43555000	72268000	181460000	90172000	91287000	541640000	233700000	307940000	554090000	289940000	264150000	30681	5549	29038	190217;190218;190219;190220;190221;190222;190223;190224;190225;190226;190227;190228;190229;190230	257249;257250;257251;257252;257253;257254;257255;257256;257257;257258;257259;257260;257261;257262;257263;257264;257265;257266	257265			18	
LGLELGK	1	Unmodified	728.44324	0.44324019	1920;1008	P60891;P21108;P11908	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	46.614	45.784	2	0.016662	39477	160511_QHF_FH_JSI11i_2	62.717	9.1629			0.81625	0.92298	24.644	6	0	Median	1.3889	1.1944	NaN	1	0	Median	0.73053	0.9118	NaN	1	0	Median	1.0013	0.99762	9.2738	2	0	Median	0.61365	0.65799	0.052475	2	0	Median	1630500000	843190000	787350000	261670000	105120000	156550000	319330000	157180000	162150000	644280000	323310000	320960000	405260000	257570000	147680000	30682	1920;1008	29039	190231;190232;190233;190234;190235;190236	257267;257268;257269;257270;257271;257272;257273	257272			7	
LGLENAEALIR	0	Unmodified	1197.6717	0.67173657	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.651	75.809	2	0.00010087	66571	160511_QHF_FH_JSI11i_2	87.066	58.667			1.0519	1.1107	12.043	4	0	Median	1.3466	1.1503	NaN	1	0	Median	0.88636	1.0725	NaN	1	0	Median	1.2485	1.2661	NaN	1	0	Median	0.84484	0.95111	NaN	1	0	Median	509670000	232500000	277170000	87446000	40648000	46798000	90614000	46060000	44553000	219580000	85803000	133780000	112030000	59987000	52038000	30683	962	29040	190237;190238;190239;190240	257274;257275;257276;257277;257278;257279	257277			6	
LGLFPSNFVK	1	Unmodified	1120.6281	0.62808085	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.782	83.11	2	1.3735E-06	74122	160511_QHF_FH_JSI11i_3	131.06	105.17			0.98283	1.0322	28.741	4	0	Median	1.6276	1.3371	NaN	1	0	Median	0.84134	0.98186	NaN	1	0	Median	1.1481	1.085	NaN	1	0	Median	0.66295	0.67296	NaN	1	0	Median	432500000	221290000	211210000	67109000	25478000	41632000	62787000	30615000	32172000	124670000	55529000	69137000	177930000	109660000	68268000	30684	5664	29041	190241;190242;190243;190244	257280;257281;257282;257283;257284;257285	257281			6	
LGLFYQLLHK	1	Unmodified	1230.7125	0.71247918	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		82.937	75.092	3	5.2874E-18	42266	160513_QHF_FH_JSI10Kac_6	143.86	126.49			1.9485	1.9152	69.718	3	0	Median	2.5608	2.2095	NaN	1	0	Median	0.53549	0.61886	NaN	1	0	Median	1.9485	1.9152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126010000	63613000	62395000	45244000	25144000	20100000	56585000	32889000	23696000	24179000	5579800	18599000	0	0	0	30685	10	29042	190245;190246;190247	257286;257287;257288;257289;257290	257290			5	
LGLGDFIFYSVLVGK	1	Unmodified	1626.9021	0.90213044	1681	P49768	PSEN1	Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.667	91.233	2	2.3298E-32	49726	160513_QHF_FH_JSI12Kac_6	161.94	128.06			1.0326	1.0859	35.67	4	0	Median	1.8815	1.5875	NaN	1	0	Median	0.83519	0.96424	NaN	1	0	Median	1.2766	1.2229	NaN	1	0	Median	0.65039	0.68607	NaN	1	0	Median	690900000	310820000	380080000	141010000	55206000	85807000	179730000	82488000	97245000	293480000	125500000	167980000	76676000	47627000	29049000	30686	1681	29043	190248;190249;190250;190251	257291;257292;257293;257294;257295;257296;257297;257298	257296			8	
LGLGEGAEEK	1	Unmodified	1001.5029	0.50293991	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		25.803	25.224	2	0.00030866	22126	160511_QHF_FH_JSI11i_1	78.556	13.091			1.0686	1.0355	14.28	3	1	Median	1.519	1.2632	NaN	1	1	Median	0.8058	0.95761	NaN	1	0	Median	1.0686	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	669370000	344320000	325050000	165670000	65680000	99989000	227920000	135660000	92257000	275780000	142980000	132800000	0	0	0	30687	1145	29044	190252;190253;190254	257299;257300	257299			2	
LGLGGNAPVSIPQQSQSVK	1	Unmodified	1879.0163	0.016325351	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	62.256	62.115	2	3.6319E-16	53984	160511_QHF_FH_JSI11i_2	116.51	90.393			0.66095	0.65152	32.637	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90168	0.82064	NaN	1	0	Median	0.48449	0.51726	NaN	1	1	Median	51278000	33274000	18004000	0	0	0	0	0	0	32264000	18471000	13793000	19014000	14803000	4210900	30688	4679	29045	190255;190256;190257	257301;257302;257303;257304	257303			4	
LGLGLEFQA	0	Unmodified	946.51238	0.51238239	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								1	3	2	4	89.753	89.28	1;2	0.0056734	81300	160511_QHF_FH_JSI10i_1	55.441	51.625			0.77588	0.94329	38.924	10	0	Median	1.6517	1.4534	NaN	1	0	Median	0.79523	1.0153	9.2875	3	0	Median	1.1129	1.1143	4.8433	2	0	Median	0.65465	0.67435	17.953	4	0	Linear	205830000	112010000	93820000	13175000	5062400	8112200	78633000	41951000	36682000	33484000	15200000	18284000	80537000	49796000	30742000	30689	1195	29046	190258;190259;190260;190261;190262;190263;190264;190265;190266;190267	257305;257306;257307;257308;257309;257310;257311;257312;257313;257314;257315;257316	257312			11	
LGLGSYPDWGSNYYQVK	1	Unmodified	1945.921	0.92102798	3655	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	82.645	81.844	2	2.7891E-11	72164	160511_QHF_FH_JSI9i_2	112.15	96.608			0.62745	0.77716	18.152	3	1	Median	NaN	NaN	NaN	0	0	Median	0.62745	0.77716	NaN	1	1	Median	0.83827	0.83585	NaN	1	0	Median	0.55486	0.59231	NaN	1	0	Median	79757000	52222000	27535000	0	0	0	22258000	15595000	6663200	31400000	18519000	12882000	26098000	18108000	7990200	30690	3655	29047	190268;190269;190270;190271;190272	257317;257318;257319;257320;257321;257322;257323	257319			7	
LGLGTAYIHGMK	1	Unmodified	1259.6696	0.66962808	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.92		1	9						4	4	4	3	3	55.837	52.531	2;3	1.8675E-06	28670	160513_QHF_FH_JSI11Kac_6	85.845	62.619			1.1846	1.1442	38.422	14	5	Median	1.5907	1.2955	18.897	4	2	Median	0.93894	1.0768	31.171	4	0	Median	1.1728	1.1567	22.215	3	1	Median	1.1964	1.2233	63.044	3	2	Median	2778800000	1214900000	1563900000	1225600000	453560000	772010000	572400000	272390000	300010000	489600000	238200000	251410000	491230000	250780000	240450000	30691	445	29048	190273;190274;190275;190276;190277;190278;190279;190280;190281;190282;190283;190284;190285;190286	257324;257325;257326;257327;257328;257329;257330;257331;257332;257333;257334;257335;257336;257337;257338;257339;257340	257329			17	
LGLGTAYIHGMK	1	Oxidation (M)	1275.6645	0.66454271	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	1	0	By MS/MS	By matching			3	0			2							1	1			42.694	41.147	3	0.0061039	33641	160511_QHF_FH_JSI9i_3	41.684	36.368			1.3131	1.2484	3.9148	2	0	Median	1.5878	1.2835	NaN	1	0	Median	1.0859	1.2143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225940000	98773000	127170000	91526000	30172000	61353000	134420000	68601000	65816000	0	0	0	0	0	0	30692	445	29048	190287;190288	257341	257341		175	1	
LGLHQQGSEPSYLDR	0	Unmodified	1698.8325	0.83254733	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		38.962	38.962	3	0.00076975	34210	160511_QHF_FH_JSI11i_3	74.853	55.275			0.76052	0.70665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76052	0.70665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44841000	27660000	17181000	0	0	0	0	0	0	44841000	27660000	17181000	0	0	0	30693	4458	29049	190289	257342	257342			1	
LGLHQVLQDLR	0	Unmodified	1290.7408	0.74081919	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			72.454	70.987	3	0.020962	59335	160511_QHF_FH_JSI10i_3	28.283	13.407			1.254	1.224	96.467	2	2	Median	2.8335	2.4212	NaN	1	1	Median	0.55495	0.61881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30663000	21836000	8826600	9611100	3431100	6180000	21051000	18405000	2646600	0	0	0	0	0	0	30694	432	29050	190290;190291	257343;257344	257343			2	
LGLHSLR	0	Unmodified	794.47627	0.47627165	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			26.55	25.226	2	0.030621	20445	160511_QHF_FH_JSI9i_3	52.018	4.2683			1.5316	1.4891	5.9681	2	0	Median	1.7492	1.4276	NaN	1	0	Median	1.341	1.5533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233580000	97987000	135600000	109310000	41018000	68288000	124280000	56969000	67310000	0	0	0	0	0	0	30695	1944;2125	29051	190292;190293	257345	257345			1	
LGLHVTPSNVDQVSTPPAAK	1	Unmodified	2030.0797	0.07965389	4957	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	55.538	54.942	3	7.5306E-07	47160	160511_QHF_FH_JSI12i_3	92.671	83.387			0.68041	0.79757	44.126	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68041	0.79757	NaN	1	0	Median	1.1469	1.0801	NaN	1	0	Median	0.44703	0.4528	NaN	1	0	Median	180480000	110050000	70433000	0	0	0	43631000	25034000	18598000	79772000	41857000	37915000	57081000	43160000	13920000	30696	4957	29052	190294;190295;190296;190297	257346;257347;257348;257349;257350	257349			5	
LGLHYVVYSGLENIK	1	Unmodified	1703.9247	0.9246568	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	2	2	1	78.2	71.957	3	0.00015105	64365	160511_QHF_FH_JSI9i_3	68.83	56.685			0.45838	0.48251	102.71	4	3	Median	NaN	NaN	NaN	0	0	Median	0.53979	0.62264	NaN	1	0	Median	0.3688	0.35498	7.3534	2	2	Median	3.0523	3.1097	NaN	1	1	Median	458950000	265160000	193790000	0	0	0	115210000	81263000	33951000	211680000	157170000	54512000	132050000	26725000	105320000	30697	4844	29053	190298;190299;190300;190301;190302;190303	257351;257352;257353;257354;257355;257356;257357	257354			7	
LGLIEWLENTVTLK	1	Unmodified	1627.9185	0.91850879	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	2	2	3	100.84	96.004	2	3.2928E-42	89834	160511_QHF_FH_JSI12i_3	211.46	191.81			0.63409	0.63209	30.976	7	1	Median	0.58758	0.51177	NaN	1	0	Median	0.67523	0.78952	2.2495	2	0	Median	0.84455	0.78885	40.961	2	1	Median	0.49871	0.51271	29.604	2	0	Median	1353300000	777000000	576250000	262240000	163030000	99217000	376620000	214540000	162080000	381000000	191920000	189080000	333390000	207510000	125880000	30698	2094	29054	190304;190305;190306;190307;190308;190309;190310;190311	257358;257359;257360;257361;257362;257363;257364;257365;257366;257367;257368	257366			11	
LGLIPIHADPR	0	Unmodified	1200.6979	0.69789175	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	3	2	2	58.484	57.508	2;3	4.0623E-05	47200	160511_QHF_FH_JSI9i_3	64.103	43.896			1.1204	1.0812	31.841	9	0	Median	1.9475	1.5639	17.096	3	0	Median	0.92412	1.0492	22.498	3	0	Median	1.0968	1.0592	2.9001	2	0	Median	0.58611	0.59376	NaN	1	0	Median	881730000	418310000	463420000	174190000	53658000	120530000	228860000	119440000	109420000	244800000	109370000	135430000	233870000	135850000	98029000	30699	260	29055	190312;190313;190314;190315;190316;190317;190318;190319;190320;190321	257369;257370;257371;257372;257373;257374;257375;257376;257377;257378;257379;257380;257381;257382;257383;257384;257385;257386	257378			17	
LGLISPAYLFLWPEAFLYR	0	Unmodified	2268.2347	0.23469797	4447	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	103.22	94.659	2;3	1.9225E-103	57305	160513_QHF_FH_JSI10Kac_6	231.75	185.34			1.0666	1.1549	41.9	9	1	Median	1.7535	1.4972	18.603	2	0	Median	0.90657	1.0691	1.4667	2	0	Median	1.3437	1.3047	16.761	2	0	Median	0.61171	0.66503	48.989	3	1	Median	2815400000	1291300000	1524000000	1028900000	367220000	661710000	1709500000	887370000	822180000	52739000	21812000	30927000	24143000	14925000	9217900	30700	4447	29056	190322;190323;190324;190325;190326;190327;190328;190329;190330	257387;257388;257389;257390;257391;257392;257393;257394;257395;257396	257395			10	
LGLKSLVSK	2	Unmodified	943.60662	0.60661712	969;1099;1097;1098	P10412;P16401;P16403;P16402	HIST1H1E;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.5;Histone H1.2;Histone H1.3	no	no	0	0	0	1				By MS/MS	3	0			1										1	43.447	43.215	3	0.032592	36812	160511_QHF_FH_JSI12i_3	35.511	0			0.59387	0.61946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59387	0.61946	NaN	1	1	Median	17731000	11685000	6046100	0	0	0	0	0	0	0	0	0	17731000	11685000	6046100	30701	969;1097;1099;1098	29057	190331	257397	257397			1	
LGLLALACSDGK	1	Unmodified	1216.6486	0.64855829	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			74.663	73.223	2	0.013582	61419	160511_QHF_FH_JSI10i_3	53.597	30.857			0.056032	0.063703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.056032	0.063703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159620000	147400000	12217000	0	0	0	159620000	147400000	12217000	0	0	0	0	0	0	30702	3756	29058	190332	257398	257398			1	
LGLLDNHSSEFNVTR	0	Unmodified	1700.8482	0.84819739	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.7		5	5						3	5	3	4	1	62.292	59.162	2;3	1.2555E-21	53682	160511_QHF_FH_JSI11i_3	178.84	156.15			1.1849	1.1641	34.97	12	5	Median	1.8539	1.5075	25.631	5	3	Median	0.7157	0.8179	12.539	3	0	Plateau	1.1551	1.1149	10.673	3	1	Median	0.71662	0.78706	NaN	1	1	Median	1566900000	675730000	891220000	535990000	204240000	331750000	790110000	368030000	422070000	226230000	94514000	131710000	14625000	8944700	5680000	30703	1459	29059	190333;190334;190335;190336;190337;190338;190339;190340;190341;190342;190343;190344;190345	257399;257400;257401;257402;257403;257404;257405;257406;257407;257408;257409;257410;257411;257412;257413;257414;257415;257416	257400			18	
LGLLEALLK	1	Unmodified	968.62702	0.62701821	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.29	101.21	2	5.7799E-06	87867	160511_QHF_FH_JSI12i_3	114.5	71.251			0.56986	1.1549	50.719	4	0	Linear	1.8445	1.5078	NaN	1	0	Median	0.76765	0.88457	NaN	1	0	Median	1.7178	1.6192	NaN	1	0	Median	0.53668	0.54753	NaN	1	0	Median	646000000	317480000	328520000	76369000	26986000	49383000	178740000	87615000	91129000	144210000	57438000	86775000	246670000	145440000	101230000	30704	3675	29060	190346;190347;190348;190349	257417;257418;257419;257420;257421;257422;257423	257422			7	
LGLLFFPYLHQDWEVQYQQDTPVAPR	0	Unmodified	3159.5818	0.58180594	2876	Q5BJH7	YIF1B	Protein YIF1B	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.349	86.907	3	3.0093E-75	47366	160513_QHF_FH_JSI12Kac_6	248.7	226.14			0.61116	0.6493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61116	0.6493	NaN	1	1	Median	173780000	138310000	35470000	0	0	0	0	0	0	0	0	0	173780000	138310000	35470000	30705	2876	29061	190350	257424	257424			1	
LGLLGLANSLAIEGR	0	Unmodified	1495.8722	0.8722273	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.449	84.729	2	0.0017218	48164	160513_QHF_FH_JSI10Kac_6	84.289	49.402			0.65806	0.79297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65806	0.79297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26124000	17456000	8668500	0	0	0	26124000	17456000	8668500	0	0	0	0	0	0	30706	1747	29062	190351	257425	257425			1	
LGLLGLPAPK	1	Unmodified	977.62735	0.62735256	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.141	75.529	2	6.8215E-11	67194	160511_QHF_FH_JSI10i_2	144.83	116.32			0.99188	1.1064	24.83	6	0	Median	1.4644	1.2479	NaN	1	0	Median	0.89657	1.1147	NaN	1	0	Median	1.1458	1.1186	2.594	2	0	Median	0.69003	0.72832	14.738	2	0	Median	655470000	321640000	333840000	65485000	24181000	41304000	87825000	48792000	39033000	271970000	119660000	152310000	230200000	129000000	101190000	30707	4271	29063	190352;190353;190354;190355;190356;190357	257426;257427;257428;257429;257430;257431;257432;257433;257434;257435	257432			10	
LGLLLHDSIQIPR	0	Unmodified	1473.8667	0.86674799	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		79.608	78.249	3	5.5256E-05	65628	160511_QHF_FH_JSI10i_3	78.324	72.831			1.1075	1.1037	31.033	2	0	Median	1.623	1.3745	NaN	1	0	Median	0.75568	0.88622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20956000	9837200	11119000	11502000	3988500	7513600	9454300	5848700	3605600	0	0	0	0	0	0	30708	1003	29064	190358;190359;190360	257436;257437;257438;257439	257437			4	
LGLLVFPYTHQNWEVQYSR	0	Unmodified	2349.1906	0.19060132	640	O95070	YIF1A	Protein YIF1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	87.084	79.045	2;3	2.8685E-87	43250	160513_QHF_FH_JSI9Kac_6	194.51	179.25			0.88357	1.0242	26.839	6	1	Median	1.5267	1.3295	NaN	1	0	Median	0.88357	1.0322	6.3744	2	0	Median	1.1298	1.0631	NaN	1	0	Median	0.64825	0.68337	0.12124	2	1	Median	1836200000	865420000	970780000	263230000	96013000	167220000	919240000	458060000	461180000	388970000	170840000	218130000	264760000	140510000	124250000	30709	640	29065	190361;190362;190363;190364;190365;190366	257440;257441;257442;257443;257444;257445;257446;257447	257442			8	
LGLMEMIAFAR	0	Unmodified	1250.6515	0.65153518	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.519	86.798	2	0.017653	49753	160513_QHF_FH_JSI10Kac_6	47.706	23.484			0.95719	1.1489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95719	1.1489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94210000	42963000	51247000	0	0	0	94210000	42963000	51247000	0	0	0	0	0	0	30710	3513	29066	190367	257448	257448			1	
LGLMRDDTIYEDEDVK	1	Unmodified	1910.8932	0.89315825	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.56	0.497		4	5							1	4	4		59.901	59.206	2;3	0.00020887	52464	160511_QHF_FH_JSI11i_3	99.671	77.798			1.0014	1.0136	18.402	9	3	Median	1.4258	1.2103	NaN	1	0	Median	0.8443	0.98275	16.374	4	1	Median	1.0312	0.99393	21.801	4	2	Median	NaN	NaN	NaN	0	0	Median	1469700000	734930000	734820000	89977000	39199000	50778000	378090000	215680000	162410000	1001700000	480050000	521630000	0	0	0	30711	1066	29067	190368;190369;190370;190371;190372;190373;190374;190375;190376	257449;257450;257451;257452;257453;257454;257455;257456;257457;257458;257459;257460;257461	257449			13	
LGLPDYHK	1	Unmodified	941.49707	0.49706667	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			36.974	36.014	3	0.015466	31635	160511_QHF_FH_JSI10i_2	36.557	27.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30712	1259	29068	190377	257462	257462			1	
LGLPFVK	1	Unmodified	772.48471	0.48471107	3225	Q7L3T8	PARS2	Probable proline--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.85	69.701	2	0.042081	60377	160511_QHF_FH_JSI12i_3	46.351	20.242			0.67344	0.66369	33.009	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89557	0.83817	NaN	1	0	Median	0.50641	0.52553	NaN	1	0	Median	29945000	17921000	12024000	0	0	0	0	0	0	12506000	6532700	5972900	17439000	11388000	6050900	30713	3225	29069	190378;190379	257463	257463			1	
LGLPLLLMPEEAR	0	Unmodified	1450.8218	0.82177163	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.71	101.64	2	1.0148E-06	88408	160511_QHF_FH_JSI12i_3	127.42	113.65			0.77504	0.85116	44.211	6	2	Median	1.6603	1.4474	NaN	1	0	Median	0.69119	0.85479	NaN	1	0	Median	1.1528	1.0952	36.261	2	1	Median	0.50796	0.54012	16.105	2	1	Median	463180000	247880000	215300000	57008000	17246000	39762000	101320000	62980000	38337000	169940000	80071000	89871000	134920000	87584000	47333000	30714	4404	29070	190380;190381;190382;190383;190384;190385	257464;257465;257466;257467;257468;257469;257470	257470			7	
LGLPPLTPEQQEALQK	1	Unmodified	1760.9672	0.96724989	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								1	4	3	2	74.827	74.157	2;3	2.5037E-22	67252	160511_QHF_FH_JSI10i_1	142.1	88.769			1.0558	1.1553	28.657	8	3	Median	1.8206	1.4871	NaN	1	0	Median	0.92005	1.1188	1.0451	3	2	Median	1.515	1.51	34.288	2	0	Median	0.99534	1.0829	52.593	2	1	Median	814540000	417780000	396760000	127090000	46287000	80805000	274330000	141160000	133180000	222890000	112750000	110130000	190230000	117590000	72643000	30715	5315	29071	190386;190387;190388;190389;190390;190391;190392;190393;190394;190395	257471;257472;257473;257474;257475;257476;257477;257478;257479;257480;257481;257482;257483;257484;257485;257486;257487;257488	257480			18	
LGLQNDLFSLAR	0	Unmodified	1345.7354	0.73539946	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	3	2		88.414	87.886	2	4.5851E-06	73302	160511_QHF_FH_JSI10i_3	123.51	101.66			0.82086	0.86739	25.58	6	4	Median	1.1484	0.97588	NaN	1	1	Median	0.55533	0.67574	27.518	3	2	Plateau	0.96236	0.93086	39.253	2	1	Median	NaN	NaN	NaN	0	0	Median	1453100000	776210000	676910000	248530000	107230000	141300000	591640000	340850000	250780000	612970000	328130000	284840000	0	0	0	30716	1862	29072	190396;190397;190398;190399;190400;190401	257489;257490;257491;257492;257493;257494;257495	257491			7	
LGLQSLR	0	Unmodified	785.47594	0.4759373	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	41.539	40.844	2	0.0013855	34185	160511_QHF_FH_JSI10i_3	121.29	41.839			0.90172	0.92189	27.72	4	1	Median	1.2979	1.105	NaN	1	1	Median	0.85848	0.97176	NaN	1	0	Median	0.94714	0.87458	NaN	1	0	Median	0.5637	0.58199	NaN	1	0	Median	1643700000	879570000	764120000	203780000	100040000	103740000	754270000	397920000	356350000	370230000	177980000	192250000	315400000	203630000	111770000	30717	1137	29073	190402;190403;190404;190405;190406;190407;190408	257496;257497;257498;257499;257500;257501;257502;257503	257498			8	
LGLQYSQGLVSGSNAR	0	Unmodified	1648.8533	0.85328277	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		57.295	56.522	2	1.2328E-05	50190	160511_QHF_FH_JSI11i_3	119.69	69.336			1.4341	1.2482	23.009	2	0	Median	1.7905	1.4688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1486	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62962000	24102000	38860000	42659000	13451000	29209000	0	0	0	20302000	10651000	9651300	0	0	0	30718	5320	29074	190409;190410	257504;257505;257506;257507	257505			4	
LGLSLVVPGGGIK	1	Unmodified	1208.7493	0.74925861	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.645	82.973	2	4.4395E-10	72033	160511_QHF_FH_JSI12i_3	142	126.73			0.90989	0.6571	33.062	4	0	Linear	1.781	1.4756	NaN	1	0	Median	0.84081	0.96297	NaN	1	0	Median	0.98464	0.9164	NaN	1	0	Median	0.64463	0.6595	NaN	1	0	Median	243700000	142080000	101620000	31708000	11832000	19876000	46782000	25676000	21106000	67515000	37865000	29651000	97690000	66705000	30985000	30719	4311	29075	190411;190412;190413;190414	257508;257509;257510;257511;257512;257513;257514;257515	257515			8	
LGLSLVVPGGGIKK	2	Unmodified	1336.8442	0.84422163	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.355	69.057	3	0.02265	59784	160511_QHF_FH_JSI12i_3	32.734	29.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30720	4311	29076	190415	257516	257516			1	
LGLSNGGQVFLK	1	Unmodified	1231.6925	0.69247202	395	O43933	PEX1	Peroxisome biogenesis factor 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.962	64.671	2	0.0049826	55848	160511_QHF_FH_JSI12i_3	55.084	32.998			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30721	395	29077	190416	257517	257517			1	
LGLSTLGELK	1	Unmodified	1029.607	0.60701105	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.42	3.86	2	4	5						1	2	3	4	3	69.114	68.36	2	2.3532E-09	60578	160511_QHF_FH_JSI11i_3	129.38	95.586			1.2261	1.3065	13.879	10	1	Median	1.662	1.3785	7.8949	2	0	Median	0.99301	1.1509	10.864	3	0	Median	1.4208	1.414	5.9821	3	0	Plateau	0.98707	1.0307	8.4559	2	1	Median	1880600000	902240000	978360000	301690000	122770000	178920000	386200000	214230000	171970000	772290000	336200000	436090000	420420000	229040000	191380000	30722	329	29078	190417;190418;190419;190420;190421;190422;190423;190424;190425;190426;190427;190428	257518;257519;257520;257521;257522;257523;257524;257525;257526;257527;257528;257529;257530;257531;257532;257533;257534;257535;257536;257537	257518			20	
LGLTDINEAYVETLK	1	Unmodified	1677.8825	0.88251721	5634	Q9Y4P1	ATG4B	Cysteine protease ATG4B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		90.441	90.081	2	1.376E-05	81769	160511_QHF_FH_JSI10i_1	85.522	44.932			3.6765	3.5098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6765	3.5098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10555000	2347200	8208300	0	0	0	0	0	0	10555000	2347200	8208300	0	0	0	30723	5634	29079	190429;190430	257538;257539	257539			2	
LGLTEDQFIR	0	Unmodified	1190.6295	0.62953741	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	64.652	63.728	2	0.011899	55475	160511_QHF_FH_JSI11i_2	60.717	41.446			0.42674	0.45466	14.114	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48966	0.50238	NaN	1	1	Median	0.37189	0.41148	NaN	1	1	Median	350790000	250170000	100620000	0	0	0	0	0	0	224580000	153030000	71551000	126220000	97147000	29068000	30724	1307	29080	190431;190432	257540;257541;257542	257542			3	
LGLTEIR	0	Unmodified	800.4756	0.47560295	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	21.686	20.82	2	0.034652	27075	160511_QHF_FH_JSI9i_2	50.025	0			0.76853	0.74901	20.046	2	0	Median	0.74828	0.65002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78932	0.86307	NaN	1	0	Median	166740000	85404000	81331000	105790000	54749000	51042000	0	0	0	0	0	0	60944000	30655000	30289000	30725	3803	29081	190433;190434	257543;257544	257544			2	
LGLTEIRK	1	Unmodified	928.57057	0.57056597	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.957	30.957	3	0.021068	26849	160511_QHF_FH_JSI11i_3	36.557	12.402			0.77004	0.71576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77004	0.71576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111410000	68324000	43088000	0	0	0	0	0	0	111410000	68324000	43088000	0	0	0	30726	3803	29082	190435	257545	257545			1	
LGLTFLK	1	Unmodified	790.49528	0.49527576	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.351	69.54	2	0.011468	60417	160511_QHF_FH_JSI12i_3	70.912	18.229			1.0014	1.0315	34.104	4	0	Median	1.6006	1.3057	NaN	1	0	Median	0.87098	0.98025	NaN	1	0	Median	1.1513	1.0854	NaN	1	0	Median	0.58707	0.58868	NaN	1	0	Median	577500000	299970000	277530000	109420000	44537000	64883000	130800000	70345000	60457000	143910000	67798000	76116000	193370000	117290000	76077000	30727	4424	29083	190436;190437;190438;190439	257546;257547;257548	257548			3	
LGLTFLKPK	2	Unmodified	1015.643	0.64300263	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	60.615	59.788	3	0.0024542	49043	160511_QHF_FH_JSI9i_3	55.549	47.904			0.65151	0.6231	21.047	4	4	Median	0.81765	0.67481	NaN	1	1	Median	0.70727	0.79292	NaN	1	1	Median	0.60016	0.57535	NaN	1	1	Median	0.47849	0.48565	NaN	1	1	Median	328730000	165060000	163670000	68756000	32069000	36687000	102960000	51777000	51178000	55357000	26573000	28783000	101660000	54643000	47017000	30728	4424	29084	190440;190441;190442;190443;190444;190445	257549;257550;257551;257552;257553;257554	257553			6	
LGLVEFNILWNR	0	Unmodified	1472.814	0.81398414	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.606	86.232	2	5.4599E-31	46451	160513_QHF_FH_JSI12Kac_6	182.71	147.17			0.89753	0.95391	23.001	4	0	Median	1.3482	1.1572	NaN	1	0	Median	0.72594	0.87294	NaN	1	0	Median	1.1097	1.0424	NaN	1	0	Median	0.63999	0.68414	NaN	1	0	Median	598680000	298830000	299850000	105410000	41469000	63945000	265300000	132250000	133050000	143050000	72750000	70297000	84914000	52359000	32555000	30729	871	29085	190446;190447;190448;190449	257555;257556;257557;257558;257559;257560	257558			6	
LGLVFDDVVGIVEIINSK	1	Unmodified	1929.0823	0.082279652	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		103.77	103.7	3	1.6846E-05	91496	160511_QHF_FH_JSI9i_2	79.97	69.376			0.93946	0.91438	68.985	3	1	Median	1.9319	1.6955	NaN	1	0	Median	0.36138	0.42773	NaN	1	1	Median	0.93946	0.91438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39709000	20893000	18816000	15358000	6984400	8373800	6670600	5222200	1448400	17680000	8686100	8993900	0	0	0	30730	2169	29086	190450;190451;190452	257561;257562;257563	257561			3	
LGLVGVNLTLDGVK	1	Unmodified	1396.829	0.8289655	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.19	2	4	4						2	3	4	3	2	92.289	90.751	2	1.5349E-14	80438	160511_QHF_FH_JSI12i_3	156.51	125.43			0.9594	1.0655	41.106	12	4	Median	1.6261	1.4109	28.192	3	2	Plateau	0.82939	1.0104	59.477	4	2	Median	1.442	1.369	8.479	3	0	Median	0.70277	0.74897	17.007	2	0	Median	1326100000	722320000	603770000	237680000	124160000	113510000	449920000	283440000	166490000	250860000	109560000	141290000	387630000	205160000	182470000	30731	1798	29087	190453;190454;190455;190456;190457;190458;190459;190460;190461;190462;190463;190464	257564;257565;257566;257567;257568;257569;257570;257571;257572;257573;257574;257575;257576;257577;257578;257579;257580;257581;257582;257583;257584;257585;257586;257587	257585			22	
LGMENDDTAVQYAIGR	0	Unmodified	1751.8148	0.81484835	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.024	63.399	2	3.3044E-30	57686	160511_QHF_FH_JSI11i_1	192.14	166.71			0.97119	1.0425	15.118	4	1	Median	1.4002	1.1336	NaN	1	1	Median	0.89548	1.0545	NaN	1	0	Median	1.0533	1.0307	NaN	1	0	Median	0.76405	0.80114	NaN	1	0	Median	301300000	151820000	149480000	50177000	21476000	28701000	89349000	41559000	47790000	84672000	44898000	39774000	77106000	43891000	33215000	30732	2226	29088	190465;190466;190467;190468	257588;257589;257590;257591;257592;257593;257594	257589			7	
LGMFDLHYCDK	1	Unmodified	1397.6108	0.61079258	61	CON__P34955			yes	yes	0	0	0	0			By MS/MS		3	0			1									1		64.621	64.621	3	0.057855	57602	160511_QHF_FH_JSI11i_3	22.781	17.466		+	0.60127	0.5705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60127	0.5705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17611000	12505000	5106400	0	0	0	0	0	0	17611000	12505000	5106400	0	0	0	30733	61	29089	190469	257595	257595			1	
LGMGHCFVK	1	Unmodified	1047.4994	0.49939163	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			32.233	30.835	3	0.0025999	25726	160511_QHF_FH_JSI10i_3	57.96	48.746			0.83406	0.80629	37.857	2	2	Median	1.3022	1.0538	NaN	1	1	Median	0.53423	0.61693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82388000	48374000	34014000	36595000	16696000	19899000	45793000	31678000	14115000	0	0	0	0	0	0	30734	3115	29090	190470;190471	257596;257597;257598	257596			3	
LGMHVIIAGNNDSK	1	Unmodified	1467.7504	0.7503976	3544	Q8N5I4	DHRSX	Dehydrogenase/reductase SDR family member on chromosome X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	2	2	1		49.424	43.28	3	0.0031927	23424	160513_QHF_FH_JSI11Kac_6	47.037	35.061			1.0191	0.80718	34.836	5	1	Median	1.3257	1.0886	42.299	2	1	Median	0.59396	0.7026	15.152	2	0	Median	1.256	1.2272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113120000	59870000	53251000	38261000	16666000	21594000	62614000	37962000	24652000	12247000	5242300	7004300	0	0	0	30735	3544	29091	190472;190473;190474;190475;190476	257599;257600;257601;257602	257600			4	
LGMLSPEGTCK	1	Unmodified	1191.5628	0.56277975	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.84	2	4	2				2			1	5	2	2	43.634	40.883	2	7.5096E-06	35156	160511_QHF_FH_JSI11i_2	109.66	85.895			0.90808	1.0121	29.206	10	5	Median	1.5962	1.3576	NaN	1	1	Median	0.96858	1.1494	23.139	5	3	Median	0.88419	0.88372	4.0916	2	0	Median	0.63472	0.72993	15.965	2	1	Median	1697200000	914890000	782260000	142590000	54855000	87733000	706590000	362800000	343790000	485650000	288570000	197080000	362320000	208670000	153650000	30736	1650	29092	190477;190478;190479;190480;190481;190482;190483;190484;190485;190486	257603;257604;257605;257606;257607;257608;257609;257610;257611;257612;257613;257614;257615;257616;257617	257613			15	
LGMLSPEGTCKAFDTAGNGYCR	1	Acetyl (K);Oxidation (M)	2462.0665	0.06646472	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		73.87	63.14	3	0.014708	33719	160513_QHF_FH_JSI11Kac_5	46.833	39.121			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1979100	0	1979100	0	0	0	0	0	0	1979100	0	1979100	0	0	0	30737	1650	29093	190487	257618	257618	1666	1318	1	
LGMMPLWTK	1	Unmodified	1075.5558	0.55584388	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.019	79.284	2	9.0998E-06	68838	160511_QHF_FH_JSI12i_3	111.95	85.254			0.88872	0.92973	24.342	4	0	Median	1.4622	1.1672	NaN	1	0	Median	0.76657	0.87463	NaN	1	0	Median	1.0303	0.9883	NaN	1	0	Median	0.64109	0.65538	NaN	1	0	Median	747870000	390690000	357180000	161590000	63716000	97870000	149730000	81504000	68223000	178610000	82450000	96163000	257950000	163020000	94928000	30738	919	29094	190488;190489;190490;190491	257619;257620;257621;257622;257623;257624;257625;257626	257626			8	
LGMNLMNELK	1	Unmodified	1161.5886	0.58860057	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	73.755	73.609	2	0.053469	63878	160511_QHF_FH_JSI12i_3	47.706	13.533			1.0553	1.0198	34.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3808	1.3034	NaN	1	0	Median	0.80651	0.79791	NaN	1	0	Median	489710000	237650000	252060000	0	0	0	0	0	0	273320000	118450000	154870000	216390000	119200000	97187000	30739	2779	29095	190492;190493	257627	257627			0	
LGMPQFLSPEAQSLLR	0	Unmodified	1785.9447	0.94474031	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	2	2	1	101.11	101.01	2;3	4.7094E-08	90096	160511_QHF_FH_JSI11i_3	115.82	81.513			1.007	0.95214	28.767	8	5	Median	1.6887	1.4556	29.783	3	3	Plateau	0.78224	0.92555	14.529	2	0	Median	1.0112	0.95214	0.1113	2	1	Median	0.57368	0.57572	NaN	1	1	Median	798670000	414770000	383910000	102960000	37519000	65445000	155010000	84781000	70224000	347840000	166250000	181590000	192860000	126220000	66646000	30740	1755	29096	190494;190495;190496;190497;190498;190499;190500;190501	257628;257629;257630;257631;257632;257633;257634;257635;257636;257637	257629			10	
LGMPQFLSTEAQSLLR	0	Unmodified	1789.9397	0.93965493	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		101.64	101.52	2	1.1141E-21	84135	160511_QHF_FH_JSI10i_3	174.73	148.06			0.97235	1.0699	29.9	3	1	Plateau	2.2583	1.8598	NaN	1	1	Median	0.87971	1.0337	NaN	1	0	Median	1.3258	1.2576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	367330000	177040000	190290000	42160000	12575000	29585000	194350000	102890000	91459000	130820000	61573000	69247000	0	0	0	30741	2669	29097	190502;190503;190504	257638;257639	257638			2	
LGMSADPDNEDATDK	1	Unmodified	1577.6515	0.651531	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.807	30.535	2	0.00014517	26698	160511_QHF_FH_JSI9i_1	73.273	57.135			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30742	484	29098	190505	257640	257640			1	
LGNAAWAMATSKPDILIILLQK	2	Unmodified	2366.3396	0.33957375	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		96.775	88.598	3;4	1.1166E-21	52562	160513_QHF_FH_JSI10Kac_6	138.66	127.46			0.99862	0.93384	28.145	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77418	0.90196	NaN	1	0	Median	1.2505	1.1807	33.176	2	0	Median	NaN	NaN	NaN	0	0	Median	418380000	207320000	211050000	0	0	0	175880000	91446000	84437000	242490000	115880000	126620000	0	0	0	30743	4584	29099	190506;190507;190508	257641;257642;257643;257644;257645;257646	257646			5	
LGNAPAEVDEEGK	1	Unmodified	1327.6256	0.62557424	689	O95391	SLU7	Pre-mRNA-splicing factor SLU7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			26.104	25.801	2	1.0339E-05	22272	160511_QHF_FH_JSI9i_1	86.114	67.803			0.57842	0.67574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57842	0.67574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87659000	52320000	35339000	0	0	0	87659000	52320000	35339000	0	0	0	0	0	0	30744	689	29100	190509;190510	257647;257648	257648			2	
LGNDFHTNK	1	Unmodified	1044.4989	0.49885759	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.3	1	8	8					6	4	6	6	8	7	14.598	11.108	2;3	9.2492E-07	9065	160511_QHF_FH_JSI12i_3	135.71	113.58			0.88134	1.007	37.685	27	0	Median	1.7548	1.4731	14.296	6	0	Median	0.87843	1.017	16.212	6	0	Median	1.0045	1.0233	15.982	8	0	Median	0.52887	0.59369	21.999	7	0	Median	27039000000	12313000000	14726000000	2309000000	865350000	1443600000	3604300000	1384100000	2220200000	10615000000	4451000000	6164400000	10511000000	5612700000	4898000000	30745	914	29101	190511;190512;190513;190514;190515;190516;190517;190518;190519;190520;190521;190522;190523;190524;190525;190526;190527;190528;190529;190530;190531;190532;190533;190534;190535;190536;190537	257649;257650;257651;257652;257653;257654;257655;257656;257657;257658;257659;257660;257661;257662;257663;257664;257665;257666;257667;257668;257669;257670;257671;257672;257673;257674;257675;257676;257677;257678;257679;257680;257681;257682;257683;257684;257685;257686;257687;257688;257689;257690;257691;257692;257693;257694	257690			46	
LGNDFHTNKR	1	Acetyl (K)	1242.6105	0.6105333	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	26.333	17.922	3	0.0066067	10574	160513_QHF_FH_JSI11Kac_6	78.342	68.29			0.29327	0.31188	111.27	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4849	1.7598	NaN	1	0	Median	0.23694	0.22053	NaN	1	0	Median	0.29327	0.31188	NaN	1	1	Median	79834000	57590000	22244000	0	0	0	19102000	7886600	11216000	53979000	43786000	10193000	6752600	5917000	835620	30746	914	29102	190538;190539;190540	257695;257696;257697;257698	257695	666		4	
LGNDFMGITLASSQAVSNAR	0	Unmodified	2051.0106	0.010588046	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	3	3	84.98	84.789	2;3	9.8003E-09	75792	160511_QHF_FH_JSI11i_3	137.61	117.19			1.3701	1.2517	22.961	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4816	1.4093	12.162	3	3	Plateau	0.86392	0.88466	NaN	1	1	Median	348870000	177560000	171300000	0	0	0	0	0	0	216330000	101350000	114980000	132540000	76212000	56326000	30747	4850	29103	190541;190542;190543;190544;190545;190546;190547	257699;257700;257701;257702;257703;257704;257705	257700			7	
LGNFFSPK	1	Unmodified	908.4756	0.47560295	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	3	2	2	2	52.839	51.019	2	0.00043207	43689	160511_QHF_FH_JSI12i_3	108.46	66.959			0.97848	0.99841	27.864	9	0	Median	1.6932	1.3315	17.355	3	0	Plateau	0.85628	1.0181	9.0788	2	0	Median	1.1283	1.1052	14.373	2	0	Median	0.59723	0.64121	8.3031	2	0	Median	8184900000	4055300000	4129600000	1822900000	680360000	1142500000	2058500000	1120000000	938580000	1925500000	854420000	1071100000	2377900000	1400600000	977360000	30748	1600	29104	190548;190549;190550;190551;190552;190553;190554;190555;190556	257706;257707;257708;257709;257710;257711;257712;257713;257714;257715;257716;257717;257718;257719;257720;257721;257722;257723;257724;257725;257726;257727	257727			22	
LGNFSYQK	1	Unmodified	955.47633	0.47633123	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							1	2		1	32.791	31.921	2	0.0064486	26467	160511_QHF_FH_JSI10i_3	62.546	22.343			0.50461	0.91904	39.936	4	1	Linear	1.0699	0.95123	NaN	1	0	Median	0.7991	0.96934	12.404	2	0	Median	NaN	NaN	NaN	0	0	Median	0.43475	0.43911	NaN	1	1	Median	325080000	192500000	132580000	46382000	22654000	23728000	138840000	78049000	60791000	0	0	0	139850000	91795000	48059000	30749	4202	29105	190557;190558;190559;190560	257728;257729;257730	257728			3	
LGNGINIIVATPGR	0	Unmodified	1393.8041	0.80414773	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			68.842	67.358	2	0.00018935	55223	160511_QHF_FH_JSI9i_3	91.937	80.09			1.1721	1.1423	16.18	2	0	Median	1.5871	1.2808	NaN	1	0	Median	0.86561	1.0188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51907000	22780000	29127000	25181000	10335000	14846000	26726000	12445000	14281000	0	0	0	0	0	0	30750	5042	29106	190561;190562	257731;257732	257731			2	
LGNIEFKPESR	1	Unmodified	1288.6776	0.67755023	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			40.9	39.384	2;3	0.0036538	32790	160511_QHF_FH_JSI10i_3	42.789	29.911			0.91098	1.0911	35.661	3	1	Median	1.388	1.1564	NaN	1	0	Median	0.68192	0.81379	41.476	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159220000	66413000	92811000	72537000	24091000	48446000	86687000	42322000	44365000	0	0	0	0	0	0	30751	376	29107	190563;190564;190565	257733;257734;257735;257736	257733			4	
LGNLVKNTLEK	2	Acetyl (K)	1269.7293	0.72925145	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	1	0	0	1		By matching	By MS/MS		14.7	0.471							1	2			2	1		67.091	56.333	2	0.0067342	30446	160513_QHF_FH_JSI11Kac_5	61.815	35.877			0.73872	0.79934	139.6	3	0	Median	NaN	NaN	NaN	0	0	Median	1.7058	1.9219	124.06	2	0	Median	0.29759	0.29299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18061000	11477000	6583900	0	0	0	3764300	1089300	2675000	14297000	10388000	3908900	0	0	0	30752	2992	29108	190566;190567;190568	257737	257737	2733		1	
LGNNCVFAPADVTSEK	1	Unmodified	1720.809	0.80903469	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.722	56.067	2	6.2252E-22	50693	160511_QHF_FH_JSI11i_1	178.58	145.49			0.86694	0.93011	14.937	4	0	Median	1.4388	1.2022	NaN	1	0	Median	0.8284	0.96899	NaN	1	0	Median	0.90727	0.89278	NaN	1	0	Median	0.81993	0.86169	NaN	1	0	Median	640040000	337540000	302510000	96226000	38427000	57798000	160790000	92397000	68393000	237430000	126400000	111030000	145600000	80314000	65286000	30753	4304	29109	190569;190570;190571;190572	257738;257739;257740;257741;257742;257743;257744	257738			7	
LGNPIVPLNIR	0	Unmodified	1204.7292	0.72919187	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	73.575	72.854	2	1.0072E-07	65010	160511_QHF_FH_JSI11i_3	124.98	110.83			0.98606	1.0159	31.455	10	0	Median	1.604	1.3117	17.213	2	0	Median	0.89555	1.0595	10.118	3	0	Plateau	1.1075	1.1348	10.388	3	0	Plateau	0.52322	0.55625	5.534	2	0	Median	2962900000	1538300000	1424600000	464000000	176240000	287760000	780870000	409330000	371540000	955610000	459660000	495950000	762410000	493100000	269310000	30754	2094	29110	190573;190574;190575;190576;190577;190578;190579;190580;190581;190582	257745;257746;257747;257748;257749;257750;257751;257752;257753;257754;257755;257756;257757;257758;257759;257760;257761;257762;257763;257764;257765	257746			21	
LGNPTRSEDLLDYGPFR	0	Unmodified	1948.9643	0.96428978	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				75.577	74.122	3	1.0304E-05	61083	160511_QHF_FH_JSI9i_3	84.874	69.452			1.1746	0.93437	NaN	1	1	Median	1.1746	0.93437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51915000	23959000	27956000	51915000	23959000	27956000	0	0	0	0	0	0	0	0	0	30755	816	29111	190583	257766	257766			1	
LGNQNVETK	1	Unmodified	1001.5142	0.5141733	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.563	10.18	2	2.3495E-05	7839	160511_QHF_FH_JSI11i_1	105.4	80.765			0.91748	0.97846	39.941	4	0	Median	1.6888	1.3785	NaN	1	0	Median	0.86619	1.0083	NaN	1	0	Median	0.9718	0.94947	NaN	1	0	Median	0.52099	0.52921	NaN	1	0	Median	539660000	286520000	253140000	126490000	51331000	75158000	139010000	81708000	57305000	141780000	71039000	70738000	132380000	82444000	49939000	30756	3797	29112	190584;190585;190586;190587	257767;257768;257769;257770;257771;257772	257767			6	
LGNSHQPEK	1	Unmodified	1008.4989	0.49885759	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	5.1748	4.9793	2;3	2.3493E-05	2730	160511_QHF_FH_JSI12i_3	98.044	68.668			1.1519	1.2194	49.942	8	1	Median	2.4013	2.0471	NaN	1	1	Median	1.0524	1.2726	8.8095	3	0	Median	1.2777	1.2067	0.29977	2	0	Median	0.49098	0.50354	13.022	2	0	Median	1453500000	662430000	791050000	205920000	68852000	137070000	387100000	173020000	214080000	427220000	165330000	261890000	433250000	255230000	178010000	30757	1695	29113	190588;190589;190590;190591;190592;190593;190594;190595	257773;257774;257775;257776;257777;257778;257779;257780;257781	257781			9	
LGNTISSLFGGGTTPDAK	1	Unmodified	1734.8788	0.87882882	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.738	2	4	7							2	6	3	2	75.308	74.723	2;3	1.6255E-31	66796	160511_QHF_FH_JSI11i_3	195.2	172.32			0.91663	0.96915	28.648	11	6	Median	1.494	1.2394	20.851	2	1	Median	0.70144	0.78661	29.478	5	3	Median	1.1059	1.0563	24.805	3	1	Plateau	0.6723	0.69238	NaN	1	1	Median	844910000	435700000	409220000	97219000	40840000	56379000	260530000	132610000	127920000	305420000	153630000	151790000	181740000	108610000	73131000	30758	5633	29114	190596;190597;190598;190599;190600;190601;190602;190603;190604;190605;190606;190607;190608	257782;257783;257784;257785;257786;257787;257788;257789;257790;257791;257792;257793;257794;257795;257796;257797;257798	257783			17	
LGNVDAFQLADGLQYIFAHVGQLTGMYR	0	Unmodified	3096.5491	0.5491256	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	101.56	93.12	3	9.9215E-202	53383	160513_QHF_FH_JSI9Kac_6	289.88	270.78			1.4596	1.4564	62.084	4	1	Median	1.9858	1.6836	NaN	1	0	Median	1.0728	1.2598	NaN	1	1	Median	2.0197	1.9439	NaN	1	0	Median	0.44374	0.48875	NaN	1	0	Median	1691300000	838550000	852770000	724670000	239410000	485270000	943690000	587730000	355950000	9303100	3200800	6102300	13661000	8210700	5450100	30759	3101	29115	190609;190610;190611;190612	257799;257800;257801;257802;257803;257804	257801			6	
LGNVDAFQLADGLQYIFAHVGQLTGMYR	0	Oxidation (M)	3112.544	0.54404023	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			100.08	92.646	3	2.4249E-43	55471	160513_QHF_FH_JSI10Kac_6	207.9	184.69			1.4868	1.5076	24.371	2	2	Median	2.1029	1.7911	NaN	1	1	Median	1.0512	1.2689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	439420000	203010000	236420000	157060000	29707000	127360000	282360000	173300000	109060000	0	0	0	0	0	0	30760	3101	29115	190613;190614	257805;257806	257806		2196	2	
LGNVNIDIIHR	0	Unmodified	1262.7095	0.70951906	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			58.806	57.271	3	0.00017594	47957	160511_QHF_FH_JSI10i_3	65.842	36.68			1.0842	1.2641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0842	1.2641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37837000	19040000	18796000	0	0	0	37837000	19040000	18796000	0	0	0	0	0	0	30761	557	29116	190615	257807	257807			1	
LGNYAGAVQDCER	0	Unmodified	1451.6463	0.64632646	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.373	30.984	2	0.00028733	26275	160511_QHF_FH_JSI11i_2	74.76	65.105			0.99666	1.0357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99666	1.0357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39879000	24549000	15330000	0	0	0	0	0	0	39879000	24549000	15330000	0	0	0	30762	372	29117	190616	257808;257809;257810	257809			3	
LGPAGTTILGNSK	1	Unmodified	1227.6823	0.68230126	2811	Q3B7T1	EDRF1	Erythroid differentiation-related factor 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.921	48.684	2	0.052465	41617	160511_QHF_FH_JSI12i_3	44.024	15.815			0.50076	0.5173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50076	0.5173	NaN	1	1	Median	49824000	33218000	16606000	0	0	0	0	0	0	0	0	0	49824000	33218000	16606000	30763	2811	29118	190617	257811	257811			1	
LGPASAADTGSEAKPGALAEGAAEPEPQR	1	Unmodified	2747.3362	0.33621552	5122	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0.816	1	1	1							1	1	1		48.771	48.278	3	1.65E-08	42769	160511_QHF_FH_JSI11i_3	62.582	59.367			0.87105	0.88496	25.483	3	1	Plateau	1.5364	1.3568	NaN	1	1	Median	0.9204	1.0498	NaN	1	0	Median	0.87105	0.81502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95210000	43317000	51893000	16483000	4082300	12401000	35317000	18399000	16918000	43410000	20836000	22574000	0	0	0	30764	5122	29119	190618;190619;190620	257812;257813;257814;257815;257816;257817	257812			6	
LGPDDPNVAK	1	Unmodified	1024.5189	0.51892433	2258;4625	Q9H0B6;Q07866	KLC2;KLC1	Kinesin light chain 2;Kinesin light chain 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	27.432	27.079	2	0.030885	24121	160511_QHF_FH_JSI11i_1	47.187	36.773			0.86098	0.84578	32.739	3	1	Median	NaN	NaN	NaN	0	0	Median	0.95294	1.1239	NaN	1	0	Median	0.86098	0.84578	NaN	1	1	Median	0.56318	0.58497	NaN	1	0	Median	313180000	179380000	133800000	0	0	0	113250000	60569000	52676000	120330000	68837000	51489000	79608000	49977000	29631000	30765	4625;2258	29120	190621;190622;190623	257818;257819	257818			2	
LGPEIPLAMDRFPYVALSK	1	Unmodified	2116.1391	0.13908302	831	P05187	ALPP	Alkaline phosphatase, placental type	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		101.26	101.16	3	0.00022648	82013	160511_QHF_FH_JSI9i_3	56.529	41.601			1.1633	1.007	8.7424	2	1	Median	1.3184	1.0712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0265	0.94666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	247020000	113180000	133840000	97337000	44924000	52412000	0	0	0	149690000	68260000	81428000	0	0	0	30766	831	29121	190624;190625	257820;257821	257821			2	
LGPGGLDDRYSLVSEQLEPAATSTYR	0	Unmodified	2794.3774	0.37735205	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			79.618	78.583	3	5.4741E-06	65871	160511_QHF_FH_JSI10i_3	56.298	50.395			0.98534	1.1403	2.6038	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98534	1.1403	2.6038	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55915000	27842000	28073000	0	0	0	55915000	27842000	28073000	0	0	0	0	0	0	30767	5608	29122	190626;190627	257822;257823	257822			2	
LGPGKPGLK	2	Unmodified	865.53854	0.53853756	2748	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	18.742	18.166	2;3	0.023109	14559	160511_QHF_FH_JSI9i_3	29.473	13.27			0.93475	0.9612	10.658	8	0	Median	1.3259	1.0725	2.5158	2	0	Median	0.84747	0.9694	4.5506	2	0	Median	1.0144	0.9612	2.8607	2	0	Median	0.80266	0.82365	6.9394	2	0	Median	2920000000	1488200000	1431800000	875730000	416840000	458890000	665530000	369020000	296510000	552800000	277020000	275780000	825960000	425300000	400660000	30768	2748	29123	190628;190629;190630;190631;190632;190633;190634;190635	257824;257825;257826;257827;257828;257829;257830;257831	257829			8	
LGPHTVLTFIFLEQMNK	1	Unmodified	1987.0601	0.060104421	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	4	1	94.277	86.86	2;3	2.8239E-167	47555	160513_QHF_FH_JSI11Kac_6	291.57	269.9			0.86818	1.0116	31.302	9	0	Median	1.4095	1.1954	0.67519	2	0	Median	0.84069	0.98681	3.5106	2	0	Median	0.90253	0.84295	37.252	4	0	Median	0.58873	0.61478	NaN	1	0	Median	4568400000	2194100000	2374300000	1166700000	482710000	683960000	1504800000	703850000	800950000	1329000000	646220000	682810000	567860000	361300000	206560000	30769	2198	29124	190636;190637;190638;190639;190640;190641;190642;190643;190644	257832;257833;257834;257835;257836;257837;257838;257839;257840;257841;257842;257843;257844;257845;257846;257847	257836			16	
LGPHTVLTFIFLEQMNK	1	Oxidation (M)	2003.055	0.055019043	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	90.31	81.648	3	2.5275E-11	47137	160513_QHF_FH_JSI10Kac_6	121.92	112.51			0.87653	0.87254	11.979	6	4	Median	1.1414	0.97694	NaN	1	0	Median	0.86719	1.0269	NaN	1	0	Median	0.92967	0.87254	6.5762	2	2	Median	0.74096	0.77982	5.7527	2	2	Median	1183700000	608580000	575120000	228900000	115440000	113460000	220980000	116660000	104320000	348040000	176110000	171930000	385780000	200370000	185410000	30770	2198	29124	190645;190646;190647;190648;190649;190650	257848;257849;257850;257851;257852;257853;257854;257855	257854		1838	8	
LGPISPPQPPSVSAWNK	1	Unmodified	1773.9414	0.94136949	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		77.402	77.402	2	0.0028938	69121	160511_QHF_FH_JSI11i_3	56.225	46.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30771	5646	29125	190651	257856	257856			1	
LGPLAFYK	1	Unmodified	907.51674	0.51673948	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	66.624	65.765	2	0.0019461	55052	160511_QHF_FH_JSI10i_3	83.801	40.801			0.96864	1.0577	23.747	8	0	Median	1.4306	1.1945	13.369	2	0	Median	0.89543	1.0598	4.0932	2	0	Median	1.0582	1.0434	7.3407	2	0	Median	0.66134	0.69323	17.806	2	0	Median	2045500000	1013000000	1032500000	372940000	142710000	230240000	512430000	260700000	251730000	509290000	228080000	281210000	650840000	381490000	269350000	30772	5262	29126	190652;190653;190654;190655;190656;190657;190658;190659	257857;257858;257859;257860;257861;257862;257863;257864;257865;257866;257867;257868;257869;257870;257871;257872;257873;257874;257875;257876;257877	257863			21	
LGPLLDILADSR	0	Unmodified	1281.7293	0.72925145	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	99.414	99.313	2	4.7738E-05	88194	160511_QHF_FH_JSI11i_3	113.47	101.62			1.0284	0.95725	18.59	5	1	Median	1.3334	1.1303	21.23	2	1	Median	0.75494	0.85761	NaN	1	0	Median	1.0284	0.95725	NaN	1	0	Median	0.77918	0.81324	NaN	1	0	Median	209870000	118750000	91125000	39902000	20274000	19628000	31790000	19428000	12362000	78874000	43127000	35747000	59304000	35916000	23388000	30773	2466	29127	190660;190661;190662;190663;190664	257878;257879;257880;257881;257882;257883;257884	257879			7	
LGPLLLDPSLAVR	0	Unmodified	1362.8235	0.82348619	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.699	97.497	2	0.0021749	86365	160511_QHF_FH_JSI10i_2	57.532	46.381			0.81005	0.91906	25.112	4	0	Median	1.5123	1.304	NaN	1	0	Median	0.75131	0.92455	NaN	1	0	Median	0.87339	0.91361	NaN	1	0	Median	0.66036	0.70724	NaN	1	0	Median	117660000	65098000	52557000	19761000	9063900	10697000	33914000	18374000	15540000	39628000	22508000	17120000	24352000	15152000	9199800	30774	3274	29128	190665;190666;190667;190668	257885;257886;257887	257887			1	
LGPLQVAR	0	Unmodified	852.51814	0.51813647	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	40.641	40.536	2	0.048325	34552	160511_QHF_FH_JSI12i_3	37.646	10.684			0.84709	0.84825	44.174	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1964	1.1593	NaN	1	0	Median	0.59976	0.62068	NaN	1	0	Median	954630000	537060000	417560000	0	0	0	0	0	0	489400000	243870000	245530000	465230000	293200000	172030000	30775	1473	29129	190669;190670	257888	257888			1	
LGPTEGRPQLK	1	Unmodified	1194.6721	0.67207093	268	O15235	MRPS12	28S ribosomal protein S12, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			26.081	24.773	3	0.00050068	20431	160511_QHF_FH_JSI10i_3	65.5	44.8			1.0098	0.82895	38.637	3	1	Median	1.0098	0.82895	NaN	1	0	Median	0.95695	1.1064	49.293	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	244780000	110030000	134750000	117300000	41820000	75480000	127480000	68209000	59267000	0	0	0	0	0	0	30776	268	29130	190671;190672;190673	257889;257890;257891	257889			3	
LGQAELVVIDEAAAIPLPLVK	1	Unmodified	2158.2613	0.26130665	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS		By matching	2	0		2									1		1	102.28	102.16	3	3.8366E-06	90796	160511_QHF_FH_JSI10i_2	69.122	60.934			0.7063	0.80829	11.135	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72979	0.8745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68357	0.74709	NaN	1	0	Median	100750000	59785000	40963000	0	0	0	63462000	38294000	25168000	0	0	0	37287000	21492000	15796000	30777	4623	29131	190674;190675	257892	257892			1	
LGQALTEVYAK	1	Unmodified	1191.6499	0.6499385	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.12	3	4					3	1		1	3	4	3	51.589	47.174	2	7.051E-10	40394	160511_QHF_FH_JSI12i_2	137.98	93.667			1.0373	1.1906	25.763	11	0	Median	1.4958	1.2776	NaN	1	0	Median	0.99323	1.206	25.082	3	0	Plateau	1.2555	1.2417	10.824	4	0	Median	0.71411	0.7679	5.9495	3	0	Median	1533600000	752010000	781630000	154360000	52866000	101490000	436770000	223400000	213370000	565590000	243060000	322530000	376930000	232690000	144240000	30778	2147	29132	190676;190677;190678;190679;190680;190681;190682;190683;190684;190685;190686	257893;257894;257895;257896;257897;257898;257899;257900;257901;257902;257903;257904;257905;257906	257895			14	
LGQAWYR	0	Unmodified	892.45554	0.45553621	5773				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.11		8	5						5	4	5	4	5	30.259	27.227	2	0.0091535	22490	160511_QHF_FH_JSI10i_3	80.377	30.258	+		0.93261	0.98775	25.359	18	0	Median	1.0728	0.90925	33.156	4	0	Median	0.90976	1.0856	14.528	5	0	Median	0.76976	0.96432	20.882	4	0	Linear	0.92521	0.96734	30.798	5	0	Median	16714000000	7609300000	9104300000	2942600000	1229800000	1712800000	4556900000	2280800000	2276100000	3960600000	1852600000	2108000000	5253500000	2246200000	3007300000	30779	5773	29133	190687;190688;190689;190690;190691;190692;190693;190694;190695;190696;190697;190698;190699;190700;190701;190702;190703;190704	257907;257908;257909;257910;257911;257912;257913;257914;257915;257916;257917;257918;257919	257911			13	
LGQDRPIK	1	Unmodified	925.53451	0.53451481	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			10.31	9.6751	3	0.052267	7390	160511_QHF_FH_JSI10i_3	22.74	3.6458			1.1808	1.3799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1808	1.3799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	296760000	111840000	184920000	0	0	0	296760000	111840000	184920000	0	0	0	0	0	0	30780	4568	29134	190705	257920	257920			1	
LGQEATVGK	1	Unmodified	901.4869	0.48689592	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	15.845	11.951	2	0.00013453	10319	160511_QHF_FH_JSI10i_1	90.709	56.97			0.78885	0.82552	23.979	8	0	Median	1.5896	1.3036	NaN	1	0	Median	0.71375	0.84361	5.1977	2	0	Median	0.8568	0.82609	5.1512	3	0	Median	0.56542	0.61056	1.387	2	0	Median	3680200000	2017500000	1662800000	823610000	324480000	499130000	1005400000	575020000	430350000	979410000	533160000	446250000	871850000	584820000	287030000	30781	1798	29135	190706;190707;190708;190709;190710;190711;190712;190713	257921;257922;257923;257924;257925;257926;257927	257924			7	
LGQERDPGGITAGSTDEPPMLTK	1	Unmodified	2369.1533	0.15328912	3773	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0.707	1	2	1							1	1	2		55.081	54.496	3	1.2591E-14	48268	160511_QHF_FH_JSI11i_3	120.64	105.39			1.1692	1.0883	19.799	3	0	Median	1.5814	1.3375	NaN	1	0	Median	0.74614	0.90023	NaN	1	0	Median	1.1692	1.0883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220320000	104620000	115700000	52606000	23306000	29300000	50769000	28058000	22711000	116940000	53258000	63686000	0	0	0	30782	3773	29136	190714;190715;190716;190717	257928;257929;257930;257931;257932;257933;257934;257935;257936;257937;257938;257939	257929			12	
LGQGVLVQVSPSLVK	1	Unmodified	1522.9083	0.90827845	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			76.674	75.247	2	1.3981E-07	66303	160511_QHF_FH_JSI9i_2	94.191	68.533			0.9258	0.90904	0.63102	2	2	Median	1.1147	0.91311	NaN	1	1	Median	0.76894	0.90499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65072000	32211000	32861000	20419000	9637800	10781000	44653000	22574000	22080000	0	0	0	0	0	0	30783	2476	29137	190718;190719;190720	257940;257941;257942	257942			3	
LGQHVVGMAPLSVGSLDDEPGGEAETK	1	Oxidation (M)	2708.2963	0.29632454	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS		2.75	0.433		1	3								3	1		62.392	61.636	3	1.4239E-17	54850	160511_QHF_FH_JSI11i_3	103.12	96.004			0.98702	1.0214	3.954	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86476	0.99324	NaN	1	0	Median	1.1266	1.0504	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117300000	58955000	58344000	0	0	0	50106000	26355000	23750000	67194000	32600000	34594000	0	0	0	30784	1568	29138	190721;190722;190723;190724	257943;257944;257945;257946;257947;257948	257944		1232	6	
LGQHVVGMAPLSVGSLDDEPGGEAETK	1	Unmodified	2692.3014	0.30140992	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	71.688	70.904	3	8.1587E-32	63378	160511_QHF_FH_JSI11i_3	147.17	140.52			1.1052	1.0508	30.718	7	0	Median	1.8103	1.5245	13.436	2	0	Median	0.83456	0.99519	2.2603	2	0	Median	1.1865	1.1941	18.081	2	0	Median	0.65156	0.6544	NaN	1	0	Median	1128200000	562100000	566100000	179420000	61840000	117580000	388930000	215810000	173120000	453440000	213150000	240300000	106410000	71300000	35107000	30785	1568	29138	190725;190726;190727;190728;190729;190730;190731	257949;257950;257951;257952;257953;257954;257955;257956;257957;257958;257959;257960;257961;257962;257963;257964;257965;257966;257967;257968;257969;257970;257971;257972	257951			24	
LGQIYQSWLDK	1	Unmodified	1349.698	0.69795133	270	O15258	RER1	Protein RER1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	2	2	2	71.993	70.127	2	1.6627E-05	62678	160511_QHF_FH_JSI11i_3	117.67	99.809			0.90552	0.90712	26.017	8	1	Median	1.4977	1.2378	14.111	2	0	Median	0.84245	1.0011	11.981	2	0	Median	0.90552	0.88014	2.3176	2	0	Median	0.62095	0.65373	10.597	2	1	Median	1628400000	904690000	723680000	211160000	93450000	117710000	358920000	216820000	142100000	532000000	259780000	272230000	526290000	334640000	191640000	30786	270	29139	190732;190733;190734;190735;190736;190737;190738;190739	257973;257974;257975;257976;257977;257978;257979;257980;257981;257982;257983;257984;257985;257986;257987	257973			14	
LGQMIVDYENPLK	1	Unmodified	1518.7752	0.77521537	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	74.642	73.704	2	5.181E-05	63660	160511_QHF_FH_JSI12i_2	110.86	94.225			1.2972	0.81733	35.754	3	2	Plateau	1.4832	1.2916	NaN	1	1	Median	1.2972	1.6044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73517	0.79788	NaN	1	0	Median	92415000	48830000	43586000	33704000	14871000	18833000	19179000	8426400	10752000	0	0	0	39533000	25533000	14000000	30787	5507	29140	190740;190741;190742	257988;257989;257990;257991;257992	257989			5	
LGQMVLSGVDTVLGK	1	Oxidation (M)	1531.828	0.82797922	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	6	5.2			3					1				2	2	77.349	74.569	2;3	0.00057015	65969	160511_QHF_FH_JSI12i_3	75.479	57.67			0.98654	0.98472	9.8854	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.151	1.069	2.7109	2	1	Median	0.8704	0.90515	3.0201	2	1	Median	91386000	48234000	43152000	0	0	0	0	0	0	36413000	15556000	20858000	54972000	32678000	22294000	30788	434	29141	190743;190744;190745;190746	257993;257994;257995;257996	257995		166	4	
LGQMVLSGVDTVLGK	1	Unmodified	1515.8331	0.8330646	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		10	10							7	5	4	4	88.172	87.568	2;3	4.0132E-22	76972	160511_QHF_FH_JSI11i_2	181.98	155.09			0.90632	0.93958	42.678	16	5	Median	1.169	0.99171	57.912	5	5	Median	1.0765	1.2462	10.926	3	0	Median	0.96749	0.9402	8.2601	4	0	Median	0.58316	0.61932	21.216	4	0	Median	3266500000	1705800000	1560700000	667360000	279880000	387480000	531500000	275570000	255930000	1075200000	538420000	536780000	992470000	611960000	380510000	30789	434	29141	190747;190748;190749;190750;190751;190752;190753;190754;190755;190756;190757;190758;190759;190760;190761;190762;190763;190764;190765;190766	257997;257998;257999;258000;258001;258002;258003;258004;258005;258006;258007;258008;258009;258010;258011;258012;258013;258014;258015;258016;258017;258018;258019;258020;258021;258022;258023;258024;258025;258026;258027;258028;258029;258030	258020			34	
LGQSDPAPLQHQMDIYQK	1	Unmodified	2068.0048	0.004774387	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.97	5.54	6	12	6				1	4	2	7	8	8	8	55.748	53.034	2;3	3.3845E-66	46113	160511_QHF_FH_JSI11i_2	253.79	224.1			0.9999	1.0436	28.469	30	11	Median	1.6308	1.3491	13.875	7	3	Median	0.99204	1.165	18.551	8	4	Median	1.0406	1.0226	16.424	7	2	Median	0.65829	0.69874	15.879	8	2	Median	42989000000	21871000000	21118000000	7021700000	3032700000	3989000000	11552000000	6210000000	5342300000	14122000000	6774100000	7347500000	10293000000	5854200000	4438900000	30790	1322	29142	190767;190768;190769;190770;190771;190772;190773;190774;190775;190776;190777;190778;190779;190780;190781;190782;190783;190784;190785;190786;190787;190788;190789;190790;190791;190792;190793;190794;190795;190796;190797	258031;258032;258033;258034;258035;258036;258037;258038;258039;258040;258041;258042;258043;258044;258045;258046;258047;258048;258049;258050;258051;258052;258053;258054;258055;258056;258057;258058;258059;258060;258061;258062;258063;258064;258065;258066;258067;258068;258069;258070;258071;258072;258073;258074;258075;258076;258077;258078;258079;258080;258081;258082;258083;258084;258085;258086;258087;258088;258089;258090;258091;258092;258093;258094;258095;258096;258097;258098;258099;258100;258101	258076			71	
LGQSDPAPLQHQMDIYQK	1	Oxidation (M)	2083.9997	0.99968901	1322	P29401	TKT	Transketolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.71	3	4	4					2		2	5	3	3	43.384	40.995	3	7.1227E-08	35181	160511_QHF_FH_JSI11i_2	123.63	113.98			0.95005	1.0161	35.188	13	4	Median	1.6131	1.3524	6.8281	2	1	Median	0.95005	1.1233	22.627	5	2	Median	0.97584	0.98046	3.4676	3	0	Median	0.62475	0.64014	18.074	3	1	Plateau	1893000000	1060700000	832340000	237030000	97515000	139520000	507510000	280190000	227320000	520800000	291260000	229540000	627670000	391700000	235970000	30791	1322	29142	190798;190799;190800;190801;190802;190803;190804;190805;190806;190807;190808;190809;190810	258102;258103;258104;258105;258106;258107;258108;258109;258110;258111;258112;258113;258114;258115;258116;258117;258118;258119;258120;258121;258122;258123	258113		967	22	
LGQSDPAPLQHQMDIYQKR	1	Acetyl (K);Oxidation (M)	2282.1114	0.11136472	1322	P29401	TKT	Transketolase	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		55.538	45.811	3	0.014231	24821	160513_QHF_FH_JSI11Kac_6	48.477	25.603			2.5997	2.5485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5997	2.5485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5066600	2859600	2206900	0	0	0	0	0	0	5066600	2859600	2206900	0	0	0	30792	1322	29143	190811	258124	258124	1250	967	1	
LGQSDPAPLQHQMDIYQKR	1	Acetyl (K)	2266.1165	0.1164501	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3		2	2	1	66.985	57.144	3	5.2113E-12	30890	160513_QHF_FH_JSI11Kac_6	176.46	137.64			0.040789	0.040848	240.11	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.638	1.9535	5.1158	2	0	Median	0.031143	0.030539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	202210000	175430000	26782000	0	0	0	40230000	15526000	24704000	156830000	154760000	2077700	5150300	5150300	0	30793	1322	29143	190812;190813;190814;190815;190816	258125;258126;258127;258128;258129;258130	258126	1250		6	
LGQSESQGPPR	0	Unmodified	1154.568	0.56799978	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.544	11.141	2	0.00010648	8885	160511_QHF_FH_JSI10i_1	98.055	87.181			0.77683	0.77924	28.392	4	3	Median	0.73945	0.61557	NaN	1	0	Median	0.8161	0.96181	NaN	1	1	Median	1.1019	1.0677	NaN	1	1	Median	0.61115	0.63132	NaN	1	1	Median	360670000	209990000	150680000	116770000	80106000	36664000	96299000	53273000	43026000	73980000	36188000	37792000	73623000	40422000	33202000	30794	111	29144	190817;190818;190819;190820	258131;258132;258133;258134	258133			4	
LGQSVTTIPTVGFNVETVTYK	1	Unmodified	2253.1893	0.18926392	2005	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5									1	3	5	91.597	91.101	2;3	1.2797E-14	82579	160511_QHF_FH_JSI10i_1	127.71	101.99			0.89384	0.93106	18.602	5	1	Median	NaN	NaN	NaN	0	0	Median	0.7534	0.85318	NaN	1	0	Median	1.0642	1.0598	18.31	2	0	Median	0.79567	0.82958	19.441	2	1	Median	145430000	77026000	68402000	0	0	0	23136000	11731000	11405000	65239000	28205000	37034000	57053000	37091000	19963000	30795	2005	29145	190821;190822;190823;190824;190825;190826;190827;190828;190829	258135;258136;258137;258138;258139;258140;258141;258142;258143	258142			9	
LGREEPAMSMDANGK	1	Unmodified	1604.7287	0.72867588	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	2	1	1	28.299	27.631	3	3.3879E-07	23634	160511_QHF_FH_JSI11i_3	120.7	109.65			0.84731	0.89657	50.231	5	0	Median	1.8521	1.6019	NaN	1	0	Median	0.78045	0.94494	7.4321	2	0	Median	0.88065	0.82307	NaN	1	0	Median	0.40518	0.39709	NaN	1	0	Median	862850000	443880000	418970000	187520000	73511000	114010000	300520000	174480000	126040000	331190000	165840000	165350000	43620000	30050000	13570000	30796	1438	29146	190830;190831;190832;190833;190834	258144;258145;258146;258147;258148;258149;258150;258151;258152	258145			9	
LGREEPAMSMDANGK	1	2 Oxidation (M)	1636.7185	0.71850513	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	2	1		By MS/MS	By MS/MS		3	0			3								2	1		28.214	27.551	3	0.0012112	23678	160511_QHF_FH_JSI11i_3	57.288	47.489			1.3548	1.4025	11.588	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1619	1.2922	NaN	1	0	Median	1.5798	1.5223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85329000	34046000	51283000	0	0	0	20875000	10793000	10082000	64455000	23253000	41201000	0	0	0	30797	1438	29146	190835;190836;190837	258153;258154;258155;258156	258154		1113;1114	4	
LGREEPAMSMDANGK	1	Oxidation (M)	1620.7236	0.7235905	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			3								2	1		24.708	23.907	3	0.00070508	13568	160511_QHF_FH_JSI10i_3	68.257	57.201			1.4571	1.3854	10.393	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3808	1.5733	9.4318	2	0	Median	1.4571	1.3704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135260000	61676000	73580000	0	0	0	60528000	25170000	35359000	74728000	36507000	38222000	0	0	0	30798	1438	29146	190838;190839;190840	258157;258158;258159;258160	258159		1113;1114	4	
LGRGEESVTLEQFR	0	Unmodified	1619.8267	0.82673367	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				48.853	47.243	3	0.014332	38681	160511_QHF_FH_JSI9i_3	45.864	32.727			2.0631	1.7207	NaN	1	1	Median	2.0631	1.7207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13603000	5306000	8296600	13603000	5306000	8296600	0	0	0	0	0	0	0	0	0	30799	302	29147	190841	258161	258161			1	
LGRGGSEGCNIPQNIER	0	Unmodified	1855.8959	0.89589264	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				30.209	29.168	4	0.057244	24862	160511_QHF_FH_JSI9i_2	15.193	2.0925			3.9296	3.3612	NaN	1	1	Median	3.9296	3.3612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	498040000	108530000	389520000	498040000	108530000	389520000	0	0	0	0	0	0	0	0	0	30800	719	29148	190842	258162	258162			1	
LGRIEADSESQEDIIR	0	Unmodified	1829.9119	0.91191986	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.796	44.213	3	0.0032779	36089	160511_QHF_FH_JSI9i_3	47.548	29.631			2.109	2.0656	3.6599	2	1	Median	2.4248	2.0129	NaN	1	1	Median	1.8343	2.1198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65098000	16422000	48676000	23288000	4324200	18963000	41810000	12097000	29713000	0	0	0	0	0	0	30801	1868	29149	190843;190844	258163;258164	258164			2	
LGRPLEPILYNDILYTLPK	1	Unmodified	2227.2616	0.261641	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.25	101.14	3	8.2935E-14	83707	160511_QHF_FH_JSI10i_3	138.3	124.28			1.2565	1.184	19.11	3	2	Median	1.575	1.2926	NaN	1	1	Median	0.77408	0.89642	NaN	1	1	Median	1.2565	1.184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	349710000	185380000	164330000	88741000	33437000	55304000	117230000	79276000	37949000	143750000	72665000	71080000	0	0	0	30802	2993	29150	190845;190846;190847	258165;258166;258167	258166			2	
LGSAADFLLDISETDLSSLTASIK	1	Unmodified	2466.2741	0.27411576	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		103.44	103.35	3	2.5814E-28	91107	160511_QHF_FH_JSI11i_2	156.74	141.96			1.0436	0.97268	16.09	2	0	Median	1.266	1.0899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86027	0.86808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71317000	36996000	34321000	11805000	4185600	7619800	0	0	0	59512000	32810000	26702000	0	0	0	30803	512	29151	190848;190849	258168;258169	258168			2	
LGSAGGTDFSMK	1	Unmodified	1169.5387	0.53867349	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.239	38.282	2	0.0002207	32734	160511_QHF_FH_JSI11i_2	79.201	68.97			1.0773	1.1491	7.0786	4	0	Median	1.3791	1.1636	NaN	1	0	Median	1.0551	1.3057	NaN	1	0	Median	1.1	1.1347	NaN	1	0	Median	0.99611	1.1163	NaN	1	0	Median	289420000	148150000	141280000	64829000	28084000	36745000	59563000	28905000	30658000	93130000	47820000	45310000	71900000	43336000	28564000	30804	4704	29152	190850;190851;190852;190853	258170;258171;258172;258173;258174	258173			5	
LGSAHSEAENGVEEK	1	Unmodified	1555.7114	0.71142914	4110	Q96HH9	GRAMD3	GRAM domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		11.532	11.532	3	0.0025998	9123	160511_QHF_FH_JSI11i_3	55.755	47.974			1.6696	1.5835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6696	1.5835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24705000	6703600	18001000	0	0	0	0	0	0	24705000	6703600	18001000	0	0	0	30805	4110	29153	190854	258175	258175			1	
LGSAVVTR	0	Unmodified	801.47085	0.47085192	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	17.55	16.985	2	0.0012793	13611	160511_QHF_FH_JSI12i_3	91.626	26.85			0.77613	0.87085	21.941	7	0	Median	1.3566	1.1932	NaN	1	0	Median	0.70782	0.8279	7.1535	2	0	Median	1.0637	1.038	5.1605	2	0	Median	0.64296	0.691	9.7895	2	0	Median	1240100000	678590000	561480000	129430000	45658000	83775000	265680000	152020000	113660000	438860000	212360000	226500000	406100000	268550000	137550000	30806	1837	29154	190855;190856;190857;190858;190859;190860;190861	258176;258177;258178;258179	258179			4	
LGSDPQKK	2	Unmodified	871.47633	0.47633123	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	1	By matching		By matching	By MS/MS	2.17	0.687	1	3	2							1		2	3	5.1854	5.0065	2;3	0.0019592	2750	160511_QHF_FH_JSI12i_3	51.854	27.7			0.77457	0.7911	54.697	6	0	Median	1.8569	1.6076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2636	1.2532	59.459	2	0	Median	0.57388	0.63234	24.766	3	0	Median	634660000	337950000	296720000	106570000	46395000	60176000	0	0	0	125530000	70011000	55515000	402570000	221540000	181030000	30807	4160	29155	190862;190863;190864;190865;190866;190867	258180;258181	258181			2	
LGSFHELLLEPPKK	2	Unmodified	1606.9083	0.90827845	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	62.45	61.489	3;4	0.00025698	52938	160511_QHF_FH_JSI12i_3	77.527	72.96			0.71818	0.86916	29.343	5	5	Median	1.441	1.1641	NaN	1	1	Median	0.71567	0.83284	6.0374	2	2	Median	1.1323	1.0625	NaN	1	1	Median	0.53863	0.54849	NaN	1	1	Median	461550000	239720000	221820000	83171000	33670000	49502000	117780000	69336000	48445000	142160000	62205000	79955000	118430000	74512000	43922000	30808	2887	29156	190868;190869;190870;190871;190872	258182;258183;258184;258185;258186;258187;258188;258189	258189			8	
LGSGPDGAEEIK	1	Unmodified	1171.5721	0.57208211	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.458	25.887	2	0.00022559	22822	160511_QHF_FH_JSI10i_1	94.363	71.292			0.92681	0.85359	34.621	4	3	Linear	0.9945	0.82025	NaN	1	0	Median	0.57925	0.67301	NaN	1	1	Median	0.80555	0.7803	NaN	1	1	Median	0.36184	0.38579	NaN	1	1	Median	1075200000	762340000	312810000	112430000	54717000	57713000	333080000	236770000	96305000	283240000	184880000	98354000	346410000	285970000	60443000	30809	2669	29157	190873;190874;190875;190876	258190;258191;258192;258193	258192			4	
LGSIAEIDLGVPPPVMK	1	Unmodified	1734.959	0.95899339	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		96.214	96.23	2;3	0.00061726	87274	160511_QHF_FH_JSI10i_1	62.377	49.751			0.63108	0.67305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63108	0.67305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8100300	5106600	2993700	0	0	0	8100300	5106600	2993700	0	0	0	0	0	0	30810	4521	29158	190877;190878	258194;258195	258194			2	
LGSIAIQGAIEK	1	Unmodified	1198.6921	0.69213767	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.49	2	4	6					2		2	5	4	3	59.196	56.966	2	2.3152E-07	48897	160511_QHF_FH_JSI12i_3	131.43	67.393			0.70624	0.74309	49.595	14	11	Median	0.77726	0.63376	51.287	2	2	Median	0.82293	0.92162	42.02	5	4	Median	0.99766	0.94917	72.393	4	3	Median	0.41098	0.41809	28.926	3	2	Median	5274200000	3306000000	1968100000	490880000	296760000	194110000	1004500000	671120000	333380000	2097500000	1191100000	906340000	1681300000	1147000000	534290000	30811	1249	29159	190879;190880;190881;190882;190883;190884;190885;190886;190887;190888;190889;190890;190891;190892	258196;258197;258198;258199;258200;258201;258202;258203;258204;258205;258206;258207;258208;258209;258210	258210			15	
LGSIFGLGLAYAGSNREDVLTLLLPVMGDSK	1	Unmodified	3205.7057	0.70568583	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		16	0									6	1	3	2		99.303	91.778	3;4	1.2342E-71	54777	160513_QHF_FH_JSI10Kac_6	239.53	226.19			0.8961	0.95523	23.647	6	3	Median	1.3121	1.1199	NaN	1	0	Median	0.65056	0.76634	9.4878	3	2	Median	1.2336	1.1916	22.12	2	1	Median	NaN	NaN	NaN	0	0	Median	941280000	532120000	409160000	99422000	44275000	55147000	749890000	446860000	303030000	91967000	40982000	50985000	0	0	0	30812	2370	29160	190893;190894;190895;190896;190897;190898	258211;258212;258213;258214;258215;258216	258216			5	
LGSISCK	1	Unmodified	763.38982	0.38982441	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	13.85	13.887	2	0.046038	11205	160511_QHF_FH_JSI11i_3	44.395	11.924			0.58424	0.56804	47.531	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85884	0.79496	NaN	1	0	Median	0.39744	0.4059	NaN	1	0	Median	196600000	114820000	81778000	0	0	0	0	0	0	86327000	40834000	45493000	110270000	73987000	36285000	30813	1823	29161	190899;190900	258217	258217			1	
LGSLALHNSESLDQEHAK	1	Unmodified	1947.965	0.96501806	3224	Q7L3B6	CDC37L1	Hsp90 co-chaperone Cdc37-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		37.56	36.676	3;4	1.0595E-07	32062	160511_QHF_FH_JSI11i_3	119.68	103.56			1.0392	0.99685	51.1	5	3	Median	3.7716	3.0886	NaN	1	1	Median	0.89338	1.0365	20.995	2	2	Median	1.0351	0.9862	1.5198	2	0	Median	NaN	NaN	NaN	0	0	Median	250920000	120260000	130660000	22313000	3670300	18643000	102290000	58885000	43402000	126320000	57706000	68614000	0	0	0	30814	3224	29162	190901;190902;190903;190904;190905	258218;258219;258220;258221;258222;258223;258224	258220			7	
LGSLIGLIVEEGEDWK	1	Unmodified	1756.9247	0.92471638	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.3	102.3	3	8.2055E-06	91411	160511_QHF_FH_JSI11i_3	79.771	69.137			0.80076	0.72672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80076	0.72672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40529000	25574000	14955000	0	0	0	0	0	0	40529000	25574000	14955000	0	0	0	30815	122	29163	190906	258225	258225			1	
LGSLMQYETPGFLPNK	1	Unmodified	1793.9022	0.9022068	3600	Q8NBP0	TTC13	Tetratricopeptide repeat protein 13	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.98	83.789	2	9.8567E-05	72688	160511_QHF_FH_JSI12i_3	96.64	80.387			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5090600	5090600	0	0	0	0	0	0	0	0	0	0	5090600	5090600	0	30816	3600	29164	190907	258226	258226			1	
LGSLSER	0	Unmodified	760.40792	0.40791731	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			15.927	14.995	2	0.044017	11906	160511_QHF_FH_JSI10i_3	45.394	4.2725			0.98615	1.1503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98615	1.1503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185190000	92004000	93182000	0	0	0	185190000	92004000	93182000	0	0	0	0	0	0	30817	434	29165	190908	258227	258227			1	
LGSLVENNER	0	Unmodified	1129.5728	0.57275081	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	25.317	24.434	2	1.4992E-07	20945	160511_QHF_FH_JSI9i_2	119.75	88.673			0.87947	0.99928	47.055	4	2	Median	1.8125	1.5772	NaN	1	0	Median	0.80228	1.0099	NaN	1	1	Median	0.96408	0.9888	NaN	1	1	Median	0.45344	0.5039	NaN	1	0	Median	1273700000	666050000	607610000	279190000	102240000	176950000	303810000	174850000	128960000	481170000	255690000	225470000	209490000	133280000	76219000	30818	40	29166	190909;190910;190911;190912;190913;190914	258228;258229;258230;258231;258232;258233;258234;258235	258230			8	
LGSPDEEFFHK	1	Unmodified	1304.6037	0.60371659	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	48.723	47.888	3	1.7821E-05	41029	160511_QHF_FH_JSI12i_2	72.289	59.713			0.79772	0.97686	29.575	5	1	Median	1.2833	1.0886	NaN	1	0	Median	0.79772	0.97686	NaN	1	0	Median	1.1311	1.1271	NaN	1	0	Median	0.5775	0.62548	4.6637	2	1	Median	312470000	161980000	150490000	52242000	17987000	34255000	83289000	49575000	33714000	99991000	44401000	55590000	76953000	50020000	26933000	30819	2313	29167	190915;190916;190917;190918;190919	258236;258237;258238	258236			2	
LGSPDEEFFHKVR	1	Acetyl (K)	1601.7838	0.78380622	2313	Q12846	STX4	Syntaxin-4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.465	61.001	3	0.010495	33106	160513_QHF_FH_JSI11Kac_6	50.088	37.21			0.43243	0.42251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43243	0.42251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16383000	11119000	5264100	0	0	0	0	0	0	16383000	11119000	5264100	0	0	0	30820	2313	29168	190920	258239	258239	2414		1	
LGSPDSTSPSSSPTFWNYSR	0	Unmodified	2171.976	0.97597668	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.58	65.433	2	4.3746E-11	56484	160511_QHF_FH_JSI12i_3	147.68	140.14			0.68369	0.68083	56.08	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0696	1.0122	NaN	1	1	Median	0.43702	0.45796	NaN	1	1	Median	33296000	21837000	11459000	0	0	0	0	0	0	19317000	9960800	9355800	13979000	11876000	2103100	30821	4244	29169	190921;190922	258240;258241	258241			2	
LGSPDYGNSALLSLPGYRPTTR	0	Unmodified	2334.1968	0.19680891	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				76.619	75.181	3	0.0051875	61908	160511_QHF_FH_JSI9i_3	36.523	28.685			1.2186	1.0192	11.95	2	2	Median	1.2186	1.0192	11.95	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68539000	30759000	37780000	68539000	30759000	37780000	0	0	0	0	0	0	0	0	0	30822	2587	29170	190923;190924	258242;258243	258243			2	
LGSPPPHK	1	Unmodified	831.46029	0.46028724	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		7.2212	7.2212	2	0.0090962	4966	160511_QHF_FH_JSI11i_3	56.547	33.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30823	5289	29171	190925	258244	258244			1	
LGSPPPHKEAR	1	Acetyl (K)	1229.6517	0.65166983	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		20.308	11.152	3	0.010001	7777	160513_QHF_FH_JSI11Kac_6	41.401	29.868			0.22191	0.22446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22191	0.22446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7442400	5466800	1975600	0	0	0	0	0	0	7442400	5466800	1975600	0	0	0	30824	5289	29172	190926	258245	258245	3354		1	
LGSSAASLYPVLNFLLYVPELAHSPLYIQDK	1	Unmodified	3417.8224	0.82243014	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	2	2		101.28	93.171	3;4	3.9464E-163	53233	160513_QHF_FH_JSI9Kac_6	271.47	250.97			1.2782	1.1651	22.511	6	0	Median	1.7388	1.4975	28.832	2	0	Median	0.86958	1.032	7.6182	2	0	Median	1.3002	1.2454	16.074	2	0	Median	NaN	NaN	NaN	0	0	Median	1914500000	912720000	1001800000	701020000	271210000	429810000	982170000	536770000	445400000	231300000	104740000	126560000	0	0	0	30825	4234	29173	190927;190928;190929;190930;190931;190932	258246;258247;258248;258249;258250;258251;258252;258253	258247			8	
LGSSAMNIQMLLEK	1	Unmodified	1533.7895	0.78948522	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.476	88.366	2	3.5125E-06	76742	160511_QHF_FH_JSI12i_3	124.12	96.815			0.42947	0.44518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42947	0.44518	NaN	1	1	Median	39577000	26613000	12965000	0	0	0	0	0	0	0	0	0	39577000	26613000	12965000	30826	3429	29174	190933	258254	258254			1	
LGSSFTK	1	Unmodified	738.3912	0.39120462	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				18.185	17.024	2	0.045207	13629	160511_QHF_FH_JSI9i_3	48.561	17.893			2.6588	2.1459	NaN	1	1	Median	2.6588	2.1459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84143000	29306000	54838000	84143000	29306000	54838000	0	0	0	0	0	0	0	0	0	30827	2772	29175	190934	258255	258255			1	
LGSSGLGSASSIQAAVR	0	Unmodified	1559.8267	0.82673367	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.67	4.64		2	3					1		3	1	2		56.172	53.157	2;3	3.2923E-24	46741	160511_QHF_FH_JSI9i_2	141.37	117.99			0.89712	0.93776	30.392	5	3	Median	1.2441	1.0346	13.899	2	1	Median	0.81409	0.9415	NaN	1	1	Median	0.69707	0.67217	39.037	2	1	Median	NaN	NaN	NaN	0	0	Median	524330000	314460000	209870000	207090000	102110000	104970000	116320000	58718000	57601000	200930000	153630000	47298000	0	0	0	30828	3290	29176	190935;190936;190937;190938;190939;190940	258256;258257;258258;258259;258260;258261;258262	258261			6	
LGSTAPQVLSTSSPAQQAENEAK	1	Unmodified	2313.1448	0.14483292	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	53.907	53.317	2;3	2.248E-25	48537	160511_QHF_FH_JSI12i_1	179.17	161.66			0.92458	0.94024	44.258	7	3	Median	1.419	1.1569	NaN	1	0	Median	0.77779	0.91494	26.174	2	1	Median	0.98477	0.95051	1.5362	2	0	Median	0.42191	0.43709	38.924	2	2	Median	862020000	538110000	323910000	52271000	22799000	29472000	234570000	130500000	104080000	260990000	143770000	117220000	314190000	241040000	73149000	30829	5453	29177	190941;190942;190943;190944;190945;190946;190947	258263;258264;258265;258266;258267;258268;258269;258270;258271;258272;258273;258274	258268			12	
LGSTDLCYIAAVK	1	Unmodified	1409.7225	0.72245152	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				72.805	71.97	2	0.050804	63420	160511_QHF_FH_JSI9i_2	44.318	29.898			1.9259	1.6314	NaN	1	1	Median	1.9259	1.6314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54643000	12400000	42243000	54643000	12400000	42243000	0	0	0	0	0	0	0	0	0	30830	4868	29178	190948	258275	258275			1	
LGSTEVASNVPK	1	Unmodified	1200.635	0.63501672	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.479	32.096	2	0.00020898	28926	160511_QHF_FH_JSI12i_1	95.618	82.791			0.77425	0.79203	1.7158	3	1	Median	NaN	NaN	NaN	0	0	Median	0.66898	0.7824	NaN	1	0	Median	0.81585	0.79203	NaN	1	0	Median	0.77425	0.80937	NaN	1	1	Median	551670000	333480000	218190000	0	0	0	195430000	118980000	76449000	208890000	116780000	92112000	147350000	97721000	49633000	30831	5654	29179	190949;190950;190951	258276;258277;258278;258279	258277			4	
LGSTVFVANLDYK	1	Unmodified	1425.7504	0.75038083	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.43	4	6	4					3	4	4	6	6	5	74.885	71.213	2	1.2665E-50	38399	160513_QHF_FH_JSI10Kac_6	208.72	170.63			0.9053	0.9549	28.134	17	6	Median	2.1447	1.8111	33.176	3	1	Plateau	0.78878	0.91253	11.23	5	3	Median	1.0573	1.0059	18.388	5	1	Median	0.70581	0.75394	16.733	4	1	Median	3034000000	1604500000	1429500000	453850000	173940000	279910000	753060000	415510000	337550000	1074100000	554750000	519390000	752980000	460340000	292650000	30832	1765	29180	190952;190953;190954;190955;190956;190957;190958;190959;190960;190961;190962;190963;190964;190965;190966;190967;190968;190969;190970;190971;190972	258280;258281;258282;258283;258284;258285;258286;258287;258288;258289;258290;258291;258292;258293;258294;258295;258296;258297;258298;258299;258300;258301;258302;258303;258304;258305;258306;258307;258308;258309;258310;258311;258312;258313;258314;258315	258315			36	
LGSVLVLWDINK	1	Unmodified	1355.7813	0.78128702	3524	Q8N3Y7	SDR16C5	Epidermal retinol dehydrogenase 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.221	80.873	2	4.7317E-05	45283	160513_QHF_FH_JSI11Kac_6	103.34	84.562			1.0861	1.0887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0861	1.0887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35273000	11312000	23961000	0	0	0	0	0	0	35273000	11312000	23961000	0	0	0	30833	3524	29181	190973	258316	258316			1	
LGTAMSHEIR	0	Unmodified	1113.5601	0.56007764	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							3	4	3	1	21.269	20.54	2;3	4.2543E-08	16858	160511_QHF_FH_JSI10i_3	116.77	79.422			1.0971	1.1787	25.243	10	0	Median	1.5282	1.3	23.837	3	0	Median	1.0372	1.2377	9.967	4	0	Median	1.0909	1.0434	2.7705	2	0	Median	0.65843	0.67045	NaN	1	0	Median	1779400000	906150000	873300000	245450000	94165000	151280000	539190000	295640000	243550000	586650000	259760000	326890000	408150000	256590000	151570000	30834	1388	29182	190974;190975;190976;190977;190978;190979;190980;190981;190982;190983;190984	258317;258318;258319;258320;258321;258322;258323;258324;258325;258326;258327;258328;258329;258330;258331	258323			15	
LGTDEISPR	0	Unmodified	986.50327	0.50327426	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	28.73	28.018	2	0.00023798	25189	160511_QHF_FH_JSI12i_1	99.136	80.36			1.5469	1.7899	49.824	5	1	Median	2.1948	1.8489	4.5875	2	0	Median	1.5469	1.8201	NaN	1	0	Median	1.2439	1.2401	NaN	1	0	Median	0.57079	0.58596	NaN	1	1	Median	434810000	164760000	270050000	159530000	39827000	119700000	145750000	53404000	92350000	31268000	13562000	17706000	98259000	57966000	40293000	30835	100	29183	190985;190986;190987;190988;190989	258332;258333	258332			2	
LGTDESCFNMILATR	0	Unmodified	1726.8018	0.80184082	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	80.155	79.508	2	0.00017172	69873	160511_QHF_FH_JSI11i_2	91.936	66.719			0.67858	0.70852	26.79	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85787	0.85629	NaN	1	0	Median	0.53675	0.58625	NaN	1	1	Median	54588000	27532000	27056000	0	0	0	9955100	0	9955100	25632000	13555000	12077000	19002000	13977000	5024400	30836	1170	29184	190990;190991;190992;190993	258334;258335;258336;258337;258338	258336			5	
LGTDESK	1	Unmodified	748.3603	0.36029842	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.1678	5.8439	2	0.01635	3693	160511_QHF_FH_JSI11i_1	63.21	5.0164			0.90581	0.96718	24.228	4	0	Median	1.2679	1.0322	NaN	1	0	Median	0.84424	0.99901	NaN	1	0	Median	0.97187	0.93636	NaN	1	0	Median	0.57314	0.61298	NaN	1	0	Median	1665700000	899980000	765770000	305960000	134210000	171750000	492970000	297930000	195040000	505570000	248760000	256800000	361250000	219070000	142180000	30837	1723	29185	190994;190995;190996;190997	258339;258340;258341;258342;258343;258344;258345	258340			7	
LGTDLEYLK	1	Unmodified	1050.5597	0.55972651	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				56.754	55.744	2	0.042066	48943	160511_QHF_FH_JSI9i_2	37.549	18.818			1.1868	0.99389	NaN	1	0	Median	1.1868	0.99389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26599000	15165000	11433000	26599000	15165000	11433000	0	0	0	0	0	0	0	0	0	30838	274	29186	190998	258346	258346			1	
LGTDLEYLKK	2	Acetyl (K)	1220.6653	0.66525421	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	72.693	62.071	2	0.046097	33451	160513_QHF_FH_JSI12Kac_4	54.608	40.49			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2838700	2838700	0	0	0	0	0	0	0	0	0	0	2838700	2838700	0	30839	274	29187	190999	258347	258347			1	
LGTEPTSETQDELQR	0	Unmodified	1702.801	0.80097243	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.225	33.622	2	4.6533E-40	30046	160511_QHF_FH_JSI10i_1	249.2	199.85			0.93248	1.0019	22.428	4	0	Median	1.5371	1.2788	NaN	1	0	Median	0.77743	0.92368	NaN	1	0	Median	1.1185	1.0868	NaN	1	0	Median	0.73398	0.75716	NaN	1	0	Median	541230000	272590000	268630000	116210000	43195000	73017000	178800000	101610000	77187000	143830000	67073000	76762000	102380000	60711000	41668000	30840	285	29188	191000;191001;191002;191003	258348;258349;258350;258351;258352;258353;258354	258353			7	
LGTFYPDGELVTK	1	Unmodified	1438.7344	0.73439641	5821				yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						3						1	2	72.145	63.527	2	0.030431	31857	160513_QHF_FH_JSI12Kac_3	42.743	25.307	+		1.0616	1.1516	51.215	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4976	0.47428	NaN	1	0	Median	1.0616	1.1516	0	2	0	Median	18090000	10103000	7987000	0	0	0	0	0	0	2316200	1357600	958630	15774000	8745300	7028400	30841	5821	29189	191004;191005;191006	258355;258356	258355			2	
LGTGFNPNTLDK	1	Unmodified	1275.6459	0.64591575	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	51.282	50.292	2	0.021352	43042	160511_QHF_FH_JSI12i_2	49.35	28.48			0.55686	0.51351	21.419	3	1	Plateau	0.53815	0.45081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57976	0.58494	NaN	1	0	Median	0.63851	0.68938	NaN	1	1	Median	183150000	111360000	71789000	73602000	52546000	21055000	0	0	0	69693000	34365000	35328000	39853000	24447000	15406000	30842	4181	29190	191007;191008;191009	258357;258358	258357			2	
LGTGFSDEELEEHHQSLK	1	Unmodified	2054.9545	0.95451296	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	2	2	44.086	43.799	3;4	3.6911E-23	38620	160511_QHF_FH_JSI11i_3	169.61	159.65			0.8083	0.97942	45.743	5	2	Median	NaN	NaN	NaN	0	0	Median	0.8083	1.0038	NaN	1	1	Median	1.2716	1.2069	29.534	2	0	Median	0.52064	0.52787	15.453	2	1	Median	530340000	248130000	282210000	0	0	0	24177000	15887000	8290500	307740000	108910000	198830000	198420000	123330000	75086000	30843	1148	29191	191010;191011;191012;191013;191014;191015	258359;258360;258361;258362;258363;258364;258365	258361			7	
LGTITPDGADVYSFQEEEPVLDPHLAK	1	Unmodified	2940.4393	0.43928361	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	91.259	91.015	3	0.0011086	82471	160511_QHF_FH_JSI10i_1	36.928	30.352			0.62232	0.6743	1.083	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57488	0.66915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67368	0.67948	NaN	1	1	Median	46713000	29138000	17575000	0	0	0	29030000	14959000	14070000	0	0	0	17683000	14178000	3505100	30844	3920	29192	191016;191017	258366;258367	258367			2	
LGTLSALDILIK	1	Unmodified	1255.7751	0.77513901	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	98.417	95.578	2	4.0542E-42	87175	160511_QHF_FH_JSI12i_2	208.6	139.87			0.88462	1.0008	34.145	12	0	Median	1.7228	1.4613	21.467	3	0	Median	0.84713	0.97979	8.3874	3	0	Plateau	0.90326	1.0775	22.428	3	0	Plateau	0.56552	0.60459	14.352	3	0	Median	5046300000	2674800000	2371500000	640500000	229610000	410890000	1137900000	616620000	521330000	1376100000	639140000	736960000	1891700000	1189400000	702340000	30845	3343	29193	191018;191019;191020;191021;191022;191023;191024;191025;191026;191027;191028;191029	258368;258369;258370;258371;258372;258373;258374;258375;258376;258377;258378;258379;258380;258381;258382;258383;258384;258385;258386;258387;258388;258389;258390;258391	258371			24	
LGTLSLPLPPAQTSDR	0	Unmodified	1664.9097	0.90973501	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			81.034	80.345	2	0.0042338	71521	160511_QHF_FH_JSI10i_2	54.7	18.253			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30846	4604	29194	191030	258392	258392			1	
LGTLSPAFSTR	0	Unmodified	1148.619	0.61897272	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	3	1	52.137	51.123	2	2.667E-07	42596	160511_QHF_FH_JSI10i_3	120.99	78.39			1.8042	1.492	43.303	5	2	Median	1.8897	1.492	NaN	1	0	Median	0.99722	1.1568	NaN	1	0	Median	1.3254	1.326	49.246	2	1	Median	2.5368	2.8524	NaN	1	1	Median	3684800000	1291600000	2393200000	983710000	331340000	652370000	1083600000	548600000	534960000	1156100000	342100000	814010000	461430000	69587000	391840000	30847	3213	29195	191031;191032;191033;191034;191035;191036;191037;191038	258393;258394;258395;258396;258397;258398;258399;258400;258401;258402	258394			10	
LGTPALTSR	0	Unmodified	914.51853	0.5185304	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							2	3	2	1	30.285	29.599	2	0.00034516	24556	160511_QHF_FH_JSI10i_3	82.452	40.8			1.0907	1.1371	26.657	8	2	Median	1.8889	1.5799	11.474	2	1	Median	1.0789	1.2123	10.114	3	1	Plateau	1.1579	1.1502	11.871	2	0	Median	0.69308	0.70571	NaN	1	0	Median	2259200000	1106300000	1152900000	474410000	157750000	316650000	833970000	433380000	400590000	624660000	297210000	327450000	326210000	218000000	108210000	30848	1414	29196	191039;191040;191041;191042;191043;191044;191045;191046	258403;258404;258405;258406;258407;258408;258409;258410;258411	258405			9	
LGTPELSTAERK	1	Unmodified	1300.6987	0.69867961	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		28.44	28.44	3	0.043744	24641	160511_QHF_FH_JSI11i_3	27.993	14.589			0.7171	0.67267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7171	0.67267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79480000	38951000	40528000	0	0	0	0	0	0	79480000	38951000	40528000	0	0	0	30849	2348	29197	191047	258412	258412			1	
LGTPQQIAIAR	0	Unmodified	1166.6772	0.6771563	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.745	1	2	3								2	2	2	46.053	45.292	2	0.0012904	38659	160511_QHF_FH_JSI12i_3	64.711	49.049			1.0876	1.2213	36.42	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0183	1.2213	6.3574	2	0	Median	1.5839	1.5106	53.431	2	0	Median	0.9359	0.98941	44.114	2	0	Median	387510000	179220000	208300000	0	0	0	116810000	58402000	58404000	140350000	58129000	82225000	130350000	62684000	67669000	30850	3229;4066	29198	191048;191049;191050;191051;191052;191053	258413;258414;258415;258416;258417;258418	258418			6	
LGTPVLQALGDGDFVK	1	Unmodified	1628.8774	0.87737225	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	92.905	92.602	2;3	1.7398E-05	80243	160511_QHF_FH_JSI12i_3	141.38	110.83			0.92197	0.97485	42.972	7	0	Median	1.4522	1.2529	3.0471	2	0	Median	0.78367	0.97485	NaN	1	0	Median	1.1189	1.0709	21.618	2	0	Median	0.52339	0.52915	45.876	2	0	Median	187450000	99486000	87966000	28269000	10879000	17391000	27793000	15952000	11841000	62737000	29199000	33539000	68653000	43457000	25196000	30851	2768	29199	191054;191055;191056;191057;191058;191059;191060;191061	258419;258420;258421;258422;258423;258424;258425;258426;258427;258428;258429;258430;258431;258432;258433	258432			15	
LGTQEYLQQLESHMK	1	Unmodified	1803.8825	0.88253399	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	75.033	74.541	3	4.5725E-07	65411	160511_QHF_FH_JSI11i_2	130.06	110.48			0.70237	1.1001	21.44	5	0	Linear	1.5191	1.2991	NaN	1	0	Median	0.92434	1.1445	NaN	1	0	Median	1.1337	1.095	0.66156	2	0	Median	0.71216	0.7345	NaN	1	0	Median	540860000	282560000	258300000	85590000	34801000	50789000	112300000	56052000	56251000	206940000	104250000	102690000	136020000	87458000	48562000	30852	3100	29200	191062;191063;191064;191065;191066	258434;258435;258436;258437;258438;258439;258440;258441;258442	258438			9	
LGTQPYFFNK	1	Unmodified	1213.6132	0.61315906	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	58.333	57.698	2	6.2346E-10	49543	160511_QHF_FH_JSI12i_3	138.54	107.17			0.98781	1.0099	22.317	5	1	Median	NaN	NaN	NaN	0	0	Median	0.89067	1.0622	22.106	2	0	Median	1.0547	1.0366	3.6857	2	1	Median	0.66664	0.68211	NaN	1	0	Median	1050000000	547450000	502590000	0	0	0	354640000	191350000	163290000	406130000	182630000	223500000	289270000	173460000	115810000	30853	524	29201	191067;191068;191069;191070;191071	258443;258444;258445;258446;258447;258448;258449;258450	258450			8	
LGTQTFCSR	0	Unmodified	1068.5022	0.50222841	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	25.677	24.791	2	0.053062	20457	160511_QHF_FH_JSI10i_3	35.152	17.912			0.92239	1.0247	26.737	3	0	Plateau	1.965	1.5871	NaN	1	0	Median	1.0057	1.1832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90465	0.93056	NaN	1	0	Median	116030000	53942000	62086000	25253000	9505500	15748000	44193000	21903000	22290000	0	0	0	46582000	22533000	24049000	30854	4399	29202	191072;191073;191074	258451	258451			1	
LGTSGLNQPTFQQSK	1	Unmodified	1604.8158	0.81583463	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	6	4	2							3	2	3	4	43.814	43.169	2	1.9215E-07	39250	160511_QHF_FH_JSI12i_1	91.202	58.679			0.77105	0.91979	54.805	9	5	Median	2.5399	2.1392	7.0818	2	2	Median	0.77105	0.91979	NaN	1	0	Median	1.2651	1.2053	43.367	3	1	Median	0.5872	0.58972	7.9745	3	2	Median	237400000	121550000	115840000	32005000	9431400	22573000	44059000	22899000	21160000	90101000	44429000	45672000	71233000	44795000	26438000	30855	21	29203	191075;191076;191077;191078;191079;191080;191081;191082;191083;191084;191085;191086	258452;258453;258454;258455;258456;258457;258458;258459;258460;258461;258462;258463;258464;258465;258466;258467;258468	258460			17	
LGTSQFFFGDTPSTLDAYVFGFLAPLYK	1	Unmodified	3101.5426	0.54262647	2888	Q5HYI7	MTX3	Metaxin-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.13	96.414	3	0.00089001	56982	160513_QHF_FH_JSI10Kac_6	50.723	41.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30856	2888	29204	191087	258469	258469			1	
LGTYGLAEAGGYLHTAEGTHSPAR	0	Unmodified	2428.1771	0.1771361	2814	Q3KQZ1	SLC25A35	Solute carrier family 25 member 35	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				61.621	60.106	4	0.040177	49367	160511_QHF_FH_JSI9i_3	19.538	12.426			1.0543	0.8786	NaN	1	1	Median	1.0543	0.8786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13452000	2584800	10868000	13452000	2584800	10868000	0	0	0	0	0	0	0	0	0	30857	2814	29205	191088	258470	258470			1	
LGVATVAK	1	Unmodified	757.46979	0.46978929	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0			By MS/MS	By matching	2.5	0.5		1	1									1	1	25.585	25.389	2	0.058723	21184	160511_QHF_FH_JSI11i_2	35.356	9.5291			0.97442	0.97925	52.913	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67288	0.6736	NaN	1	0	Median	1.4111	1.4236	NaN	1	0	Median	102070000	58959000	43111000	0	0	0	0	0	0	73574000	44231000	29344000	28496000	14729000	13767000	30858	1640	29206	191089;191090	258471	258471			1	
LGVCFDVPTASVTEIQEK	1	Unmodified	1991.9874	0.98739299	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		86.532	86.401	2	3.0064E-08	78383	160511_QHF_FH_JSI10i_1	126.1	103.22			0.96518	1.1406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96518	1.1406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15653000	6367700	9285500	0	0	0	15653000	6367700	9285500	0	0	0	0	0	0	30859	4940	29207	191091;191092;191093	258472;258473;258474	258473			3	
LGVDISATK	1	Unmodified	902.5073	0.50729701	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			40.412	40.021	2	0.022915	35869	160511_QHF_FH_JSI10i_1	41.724	24.338			1.0763	1.2791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0763	1.2791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132910000	46896000	86010000	0	0	0	132910000	46896000	86010000	0	0	0	0	0	0	30860	4982	29208	191094	258475	258475			1	
LGVDLDAQTWR	0	Unmodified	1272.6463	0.64625011	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	68.069	67.172	2	0.001571	59702	160511_QHF_FH_JSI10i_2	62.633	41.169			0.83099	1.0301	32.195	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83099	1.0301	NaN	1	0	Median	1.176	1.1989	NaN	1	0	Median	0.59898	0.64637	NaN	1	0	Median	249020000	132980000	116040000	0	0	0	69754000	39877000	29877000	97875000	41294000	56582000	81394000	51812000	29582000	30861	1205	29209	191095;191096;191097	258476;258477;258478	258478			2	
LGVGAATHVVIYDASDQGLYSAPR	0	Unmodified	2459.2445	0.24448739	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		75.061	74.346	3	5.8926E-13	66332	160511_QHF_FH_JSI11i_3	103.92	95.766			0.79182	0.82073	23.789	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58926	0.69366	NaN	1	1	Median	1.064	0.97108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88120000	44447000	43674000	0	0	0	16716000	12350000	4365900	71404000	32097000	39308000	0	0	0	30862	1256	29210	191098;191099;191100;191101	258479;258480;258481;258482	258479			4	
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	1	Unmodified	3667.8028	0.80279088	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	4	1	1	91.776	87.002	4;5	3.7276E-116	43944	160513_QHF_FH_JSI10Kac_6	227.74	212.34			0.9511	1.0798	19.916	8	0	Median	1.5271	1.3163	0.81648	2	0	Median	0.93044	1.0798	14.383	4	0	Median	0.93307	0.88213	NaN	1	0	Median	0.73949	0.78757	NaN	1	0	Median	2514100000	1179800000	1334300000	491570000	188050000	303520000	1665900000	808200000	857730000	256590000	127000000	129590000	99996000	56512000	43484000	30863	761	29211	191102;191103;191104;191105;191106;191107;191108;191109	258483;258484;258485;258486;258487;258488;258489;258490;258491;258492;258493;258494	258494			12	
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	1	Oxidation (M)	3683.7977	0.7977055	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			81.166	75.57	4	6.1915E-05	41589	160513_QHF_FH_JSI10Kac_6	61.099	47.934			0.5603	0.66618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5603	0.66618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66567000	50753000	15814000	0	0	0	66567000	50753000	15814000	0	0	0	0	0	0	30864	761	29211	191110	258495	258495		266	1	
LGVIEDHSNR	0	Unmodified	1138.5731	0.57308516	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.59	1	8	7					8	8	7	8	9	8	21.121	16.563	2;3	1.4898E-15	13511	160511_QHF_FH_JSI12i_3	169.12	162.67			1.1082	1.1375	38.051	32	0	Median	1.742	1.4682	12.536	7	0	Median	0.84416	1.0193	17.854	8	0	Median	1.2561	1.2494	7.4867	9	0	Median	0.5336	0.58126	8.5115	8	0	Median	20082000000	10231000000	9851600000	2087500000	664580000	1422900000	2922400000	1488900000	1433500000	7467900000	3488700000	3979300000	7604400000	4588500000	3015900000	30865	1057	29212	191111;191112;191113;191114;191115;191116;191117;191118;191119;191120;191121;191122;191123;191124;191125;191126;191127;191128;191129;191130;191131;191132;191133;191134;191135;191136;191137;191138;191139;191140;191141;191142	258496;258497;258498;258499;258500;258501;258502;258503;258504;258505;258506;258507;258508;258509;258510;258511;258512;258513;258514;258515;258516;258517;258518;258519;258520;258521;258522;258523;258524;258525;258526;258527;258528;258529;258530;258531;258532;258533;258534;258535;258536;258537;258538;258539;258540;258541;258542	258535			47	
LGVIGFAGLIGLLLAR	0	Unmodified	1581.997	0.99703388	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									6	3	3			102.7	95.237	2;3	1.4252E-54	57313	160513_QHF_FH_JSI10Kac_6	190.96	175.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30866	4451	29213	191143;191144;191145;191146;191147;191148	258543;258544;258545;258546;258547;258548	258547			6	
LGVLHPDVITK	1	Unmodified	1190.7023	0.70230842	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.3		7	6						3	3	4	5	4	51.396	48.969	2;3	2.3925E-09	41792	160511_QHF_FH_JSI12i_3	129.85	108.95			0.91331	0.95804	38.588	16	1	Median	1.8967	1.639	19.963	3	0	Median	0.87486	1.0283	12.659	4	1	Median	1.0003	0.94683	10.552	5	0	Median	0.55202	0.56109	10.485	4	0	Median	2611300000	1471100000	1140200000	175460000	64760000	110700000	475080000	236690000	238400000	923780000	502930000	420850000	1037000000	666720000	370290000	30867	4982	29214	191149;191150;191151;191152;191153;191154;191155;191156;191157;191158;191159;191160;191161;191162;191163;191164	258549;258550;258551;258552;258553;258554;258555;258556;258557;258558;258559;258560;258561;258562;258563;258564;258565;258566	258565			16	
LGVLHVGQK	1	Unmodified	949.5709	0.57090032	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	28.937	28.319	2;3	0.00012089	23335	160511_QHF_FH_JSI9i_3	91.906	62.53			1.1047	1.0587	75.786	9	4	Median	1.7251	1.418	16.101	2	1	Median	2.4606	2.7637	15.074	2	1	Median	0.91477	0.851	23.932	3	2	Median	0.3666	0.36779	18.059	2	0	Median	1685000000	914690000	770360000	351790000	153600000	198190000	175430000	56709000	118720000	691880000	378430000	313450000	465950000	325950000	139990000	30868	4991	29215	191165;191166;191167;191168;191169;191170;191171;191172;191173	258567;258568;258569;258570;258571;258572;258573;258574;258575;258576;258577;258578;258579	258575			13	
LGVLLLWR	0	Unmodified	968.61712	0.61712223	4230	Q96RY7	IFT140	Intraflagellar transport protein 140 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			87.558	81.839	2	0.00050925	46131	160513_QHF_FH_JSI10Kac_6	111.81	85.211			0.61763	0.71441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61763	0.71441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54458000	28841000	25617000	0	0	0	54458000	28841000	25617000	0	0	0	0	0	0	30869	4230	29216	191174;191175	258580;258581;258582	258581			3	
LGVLSSSQNGPPK	1	Unmodified	1282.6881	0.68811492	3632	Q8NDX5	PHC3	Polyhomeotic-like protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	34.997	34.933	2	6.5845E-05	30497	160511_QHF_FH_JSI9i_2	74.162	62.672			1.0215	1.0023	67.893	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7455	1.62	NaN	1	1	Median	0.59785	0.62019	NaN	1	0	Median	58897000	28306000	30591000	0	0	0	0	0	0	20103000	8014000	12089000	38795000	20292000	18503000	30870	3632	29217	191176;191177;191178	258583;258584;258585;258586	258584			4	
LGVLYWK	1	Unmodified	877.50617	0.5061748	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	2	3	1	1	73.357	66.477	2	0.0092953	35897	160513_QHF_FH_JSI11Kac_6	85.306	65.024			0.80171	0.95689	35.567	7	0	Median	1.6933	1.414	14.251	2	0	Median	0.80105	0.94838	9.6437	3	0	Plateau	1.0738	1.0205	NaN	1	0	Median	0.47674	0.51347	NaN	1	0	Median	2375100000	1062800000	1312300000	625350000	217280000	408080000	832300000	418750000	413560000	771610000	325250000	446360000	145820000	101510000	44308000	30871	4461	29218	191179;191180;191181;191182;191183;191184;191185	258587;258588;258589;258590;258591;258592;258593;258594;258595;258596;258597;258598	258589			12	
LGVMTYSDTGK	1	Unmodified	1170.5591	0.55907458	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			49.311	38.984	2	0.022661	21938	160513_QHF_FH_JSI10Kac_4	46.158	34.311			1.0175	1.1703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0175	1.1703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2683300	1508400	1174800	0	0	0	2683300	1508400	1174800	0	0	0	0	0	0	30872	4261	29219	191186	258599	258599			1	
LGVNNISGIEEVNMFTNQGTVIHFNNPK	1	Oxidation (M)	3101.524	0.52403307	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								4	3	1	93.264	92.869	3	1.4534E-14	80824	160511_QHF_FH_JSI12i_3	92.275	86.845			0.93201	0.89413	25.339	5	0	Median	NaN	NaN	NaN	0	0	Median	0.94587	1.0508	11.148	2	0	Median	0.93996	0.88799	0.97506	2	0	Median	0.56925	0.57454	NaN	1	0	Median	185960000	103900000	82068000	0	0	0	40771000	22037000	18734000	93685000	50177000	43507000	51507000	31681000	19826000	30873	1172	29220	191187;191188;191189;191190;191191;191192;191193;191194	258600;258601;258602;258603;258604;258605;258606;258607;258608;258609;258610	258610		795	11	
LGVNNISGIEEVNMFTNQGTVIHFNNPK	1	Unmodified	3085.5291	0.52911844	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							3	4	3	3	99.934	99.838	3;4	1.0802E-131	89043	160511_QHF_FH_JSI11i_3	271.12	259.6			0.90768	0.92743	34.439	13	0	Median	1.4323	1.2073	15.091	3	0	Plateau	0.75365	0.90724	22.718	4	0	Median	0.92041	0.92743	6.9812	3	0	Median	0.55691	0.55832	9.4984	3	0	Median	2797300000	1556400000	1240900000	290620000	116110000	174510000	421170000	251290000	169880000	1026300000	536260000	490020000	1059200000	652720000	406500000	30874	1172	29220	191195;191196;191197;191198;191199;191200;191201;191202;191203;191204;191205;191206;191207	258611;258612;258613;258614;258615;258616;258617;258618;258619;258620;258621;258622;258623;258624;258625;258626;258627;258628;258629;258630;258631;258632;258633;258634;258635;258636;258637;258638;258639;258640;258641;258642;258643;258644;258645;258646	258613			36	
LGVNNNQGVNIFNYQVATK	1	Unmodified	2092.0702	0.070151836	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		77.365	77.365	2;3	9.1985E-25	69040	160511_QHF_FH_JSI11i_3	180.54	165			0.7005	0.64883	27.262	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7005	0.64883	27.262	2	1	Median	NaN	NaN	NaN	0	0	Median	70289000	39372000	30918000	0	0	0	0	0	0	70289000	39372000	30918000	0	0	0	30875	5222	29221	191208;191209	258647;258648	258647			2	
LGVPFQVLVATHAGLYR	0	Unmodified	1840.0359	0.035938581	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	87.014	78.857	3	5.5474E-24	44931	160513_QHF_FH_JSI10Kac_6	149.22	135.18			0.92941	1.119	28.092	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92941	1.119	NaN	1	0	Median	1.3769	1.2881	NaN	1	0	Median	0.70582	0.74958	NaN	1	0	Median	580030000	292170000	287860000	0	0	0	296330000	154860000	141470000	181650000	75838000	105810000	102050000	61468000	40579000	30876	4257	29222	191210;191211;191212	258649;258650	258650			2	
LGVQDLFNSSK	1	Unmodified	1206.6245	0.62445203	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.42	4	4	3					3		3	3	4	4	73.296	71.832	2	3.7413E-07	63380	160511_QHF_FH_JSI11i_2	118.4	91.273			1.0166	1.1012	62.507	12	5	Median	1.5224	1.257	19.799	2	0	Median	1.1696	1.396	32.457	2	0	Median	1.1436	1.1548	29.218	4	3	Median	0.52734	0.54075	62.368	4	2	Median	1842000000	925530000	916490000	254560000	85064000	169500000	337290000	130360000	206930000	663950000	330200000	333750000	586220000	379900000	206320000	30877	1363	29223	191213;191214;191215;191216;191217;191218;191219;191220;191221;191222;191223;191224;191225;191226	258651;258652;258653;258654;258655;258656;258657;258658;258659;258660;258661;258662;258663;258664;258665;258666;258667;258668;258669;258670;258671	258666			21	
LGVQQSLGWVHYMIHEPEPHILLFR	0	Unmodified	2998.564	0.56398781	1404	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	91.682	83.502	3;4;5	1.7963E-129	48307	160513_QHF_FH_JSI10Kac_6	248.58	230.08			1.0076	1.0632	17.441	7	0	Median	1.6213	1.3779	8.0861	2	0	Median	0.85823	1.0075	3.3203	2	0	Median	1.2699	1.1923	NaN	1	0	Median	0.91671	0.96536	13.651	2	0	Median	3151000000	1511400000	1639600000	552540000	205060000	347480000	1488300000	726550000	761760000	365170000	162470000	202710000	744990000	417350000	327640000	30878	1404	29224	191227;191228;191229;191230;191231;191232;191233	258672;258673;258674;258675;258676;258677;258678	258678			7	
LGVQQSLGWVHYMIHEPEPHILLFR	0	Oxidation (M)	3014.5589	0.55890243	1404	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			85.155	78.015	5	2.1583E-09	44109	160513_QHF_FH_JSI10Kac_6	129.78	118.88			1.2277	1.2402	64.426	2	1	Median	2.2966	1.9559	NaN	1	0	Median	0.6563	0.78642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215650000	112910000	102750000	92495000	29344000	63151000	123160000	83564000	39595000	0	0	0	0	0	0	30879	1404	29224	191234;191235	258679;258680	258680		1047	1	
LGVQVVITDPEK	1	Unmodified	1296.7289	0.7289171	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	2	1	62.285	61.669	2	7.6396E-06	56172	160511_QHF_FH_JSI12i_1	120.77	79.066			0.92764	1.0449	31.496	7	4	Median	1.5081	1.2781	1.7649	2	0	Median	0.71647	0.86844	26.154	2	2	Median	1.0246	1.0028	14.658	2	2	Median	0.52032	0.54578	NaN	1	0	Median	1050600000	569890000	480700000	86483000	34503000	51980000	575070000	324460000	250610000	228390000	99449000	128940000	160640000	111480000	49166000	30880	1132	29225	191236;191237;191238;191239;191240;191241;191242	258681;258682;258683;258684;258685;258686;258687	258683			7	
LGVSFLVLPK	1	Unmodified	1071.6692	0.66921738	2777	Q16880	UGT8	2-hydroxyacylsphingosine 1-beta-galactosyltransferase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		86.905	77.581	2	0.0084339	43183	160513_QHF_FH_JSI11Kac_6	57.859	36.558			0.99856	0.97746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99856	0.97746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41284000	24194000	17090000	0	0	0	0	0	0	41284000	24194000	17090000	0	0	0	30881	2777	29226	191243	258688	258688			1	
LGVTANDVK	1	Unmodified	915.50255	0.50254598	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.41	5.21	7	5	1			1	3			3	4	5	5	26.933	23.744	1;2	5.158E-07	22210	160511_QHF_FH_JSI10i_1	138.4	99.177			0.97357	0.95858	48.848	17	5	Median	1.791	1.493	37.111	3	1	Plateau	0.78923	0.95429	12.345	4	0	Median	1.1431	1.1269	40.473	5	2	Median	0.56442	0.62432	45.363	5	2	Median	9681700000	4573600000	5108200000	1797100000	555570000	1241500000	2473300000	1180100000	1293200000	2856200000	1303300000	1552900000	2555200000	1534600000	1020600000	30882	1503	29227	191244;191245;191246;191247;191248;191249;191250;191251;191252;191253;191254;191255;191256;191257;191258;191259;191260	258689;258690;258691;258692;258693;258694;258695;258696;258697;258698;258699;258700;258701;258702;258703;258704;258705;258706;258707;258708	258698			20	
LGVTNTIISHYDGR	0	Unmodified	1544.7947	0.79470526	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	4	1	57.324	53.395	2;3	4.9358E-08	28287	160513_QHF_FH_JSI9Kac_6	115.1	100.31			1.2037	1.1077	22.852	11	5	Median	1.659	1.3498	1.8404	3	0	Plateau	0.917	1.0675	3.4347	3	2	Median	1.2116	1.1383	3.3209	4	3	Median	0.55983	0.60487	NaN	1	0	Median	1506100000	693010000	813120000	356310000	144290000	212020000	452010000	225450000	226560000	690210000	319700000	370510000	7601100	3572100	4029000	30883	1580	29228	191261;191262;191263;191264;191265;191266;191267;191268;191269;191270;191271	258709;258710;258711;258712;258713;258714;258715;258716;258717;258718;258719;258720;258721;258722;258723	258721			14	
LGVTPEGQSYLDQFR	0	Unmodified	1708.842	0.84204938	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.281	72.33	2	0.00021938	63406	160511_QHF_FH_JSI11i_2	103.91	89.23			0.069221	0.074301	29.885	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.059007	0.060148	NaN	1	1	Median	0.081202	0.091784	NaN	1	1	Median	429060000	396680000	32378000	0	0	0	0	0	0	275840000	255110000	20729000	153220000	141570000	11649000	30884	2793	29229	191272;191273	258724;258725	258725			2	
LGVTVLSR	0	Unmodified	843.5178	0.51780212	572	O75828	CBR3	Carbonyl reductase [NADPH] 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.62		4	3					2	4	3	4	3	3	46.266	41.354	2	0.0016104	36546	160511_QHF_FH_JSI11i_3	87.181	0			0.91754	1.0397	26.189	13	0	Median	1.495	1.2561	6.3376	3	0	Median	0.88407	1.0449	4.9129	4	0	Median	0.95415	1.0257	12.303	3	0	Plateau	0.5994	0.6123	3.5394	3	0	Median	2838800000	1475600000	1363200000	333860000	137860000	196000000	1201300000	630250000	571090000	771600000	383440000	388160000	531960000	324020000	207940000	30885	572	29230	191274;191275;191276;191277;191278;191279;191280;191281;191282;191283;191284;191285;191286	258726;258727;258728;258729;258730;258731;258732;258733;258734;258735;258736	258726			11	
LGVVYFLQYIR	0	Unmodified	1369.7758	0.77580772	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			94.48	87.113	2	2.4401E-05	50872	160513_QHF_FH_JSI10Kac_6	102	76.616			0.97706	0.98571	54.989	2	1	Median	1.6963	1.4542	NaN	1	1	Median	0.5628	0.66816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187300000	105930000	81369000	50196000	16528000	33668000	137100000	89402000	47701000	0	0	0	0	0	0	30886	5258	29231	191287;191288	258737;258738;258739	258739			3	
LGWDPKPGEGHLDALLR	1	Unmodified	1872.9846	0.98463129	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							2	8	2	1	74.522	73.395	3;4	1.8275E-05	64528	160511_QHF_FH_JSI11i_3	82.59	71.328			0.84703	0.99257	34.976	13	5	Median	1.8561	1.5498	39.032	2	1	Median	0.77394	0.89415	19.78	8	3	Median	1.138	1.0704	2.1982	2	0	Median	0.44255	0.45858	NaN	1	1	Median	632760000	320510000	312250000	31969000	12396000	19573000	275340000	143970000	131370000	286090000	134760000	151330000	39366000	29394000	9971500	30887	1862	29232	191289;191290;191291;191292;191293;191294;191295;191296;191297;191298;191299;191300;191301	258740;258741;258742;258743;258744;258745;258746;258747;258748;258749;258750;258751;258752;258753;258754;258755;258756;258757;258758;258759;258760;258761	258743			22	
LGWGHFSTVWLSWDIQGK	1	Unmodified	2116.053	0.053045209	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			92.594	85.305	3	7.2609E-07	49431	160513_QHF_FH_JSI10Kac_6	103.61	83.163			1.0263	1.0306	7.8544	2	1	Median	1.1321	0.97495	NaN	1	1	Median	0.93041	1.0895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132580000	64001000	68580000	52579000	23607000	28972000	80002000	40394000	39608000	0	0	0	0	0	0	30888	4242	29233	191302;191303	258762;258763;258764	258763			3	
LGWSIGPNHLIK	1	Unmodified	1333.7507	0.7506556	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	67.114	66.402	2;3	0.00067556	57260	160511_QHF_FH_JSI12i_3	68.657	57.629			0.67627	0.79429	41.689	5	2	Median	1.6166	1.3443	NaN	1	1	Median	0.67627	0.79429	NaN	1	1	Median	0.9964	0.93113	NaN	1	0	Median	0.5027	0.51359	14.09	2	0	Median	351220000	219440000	131790000	35181000	12742000	22439000	25826000	16837000	8988500	49694000	27886000	21808000	240520000	161970000	78550000	30889	3176	29234	191304;191305;191306;191307;191308;191309;191310	258765;258766;258767;258768;258769;258770;258771;258772;258773	258773			9	
LGWSQPLGNLQAPLGYDK	1	Unmodified	1956.0105	0.010511692	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									3	1	91.983	91.961	2	1.0647E-16	81956	160511_QHF_FH_JSI11i_3	127.02	96.468			1.0264	0.9751	46.143	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4687	1.3513	NaN	1	0	Median	0.71726	0.70364	NaN	1	0	Median	51698000	28196000	23502000	0	0	0	0	0	0	21083000	9181900	11901000	30615000	19014000	11601000	30890	5241	29235	191311;191312;191313;191314	258774;258775;258776;258777;258778	258775			5	
LGWVRPDLGELSK	1	Unmodified	1468.8038	0.80381338	1762	P51970	NDUFA8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	2	1	71.155	70.285	2;3	0.00013967	62469	160511_QHF_FH_JSI11i_3	71.879	61.525			1.0075	1.0323	34.468	8	0	Median	1.75	1.4374	6.1065	2	0	Median	0.81519	0.9685	7.6267	3	0	Median	1.2269	1.1328	9.9149	2	0	Median	0.47307	0.49146	NaN	1	0	Median	1790300000	873630000	916660000	329360000	127630000	201730000	472630000	277960000	194670000	853980000	385000000	468980000	134320000	83037000	51279000	30891	1762	29236	191315;191316;191317;191318;191319;191320;191321;191322	258779;258780;258781;258782;258783;258784;258785;258786;258787;258788;258789;258790;258791;258792;258793	258779			15	
LGYANAK	1	Unmodified	735.39154	0.39153897	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	12.683	12.01	2	0.029706	9409	160511_QHF_FH_JSI12i_2	54.525	30.553			0.56938	0.66563	2.897	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5337	0.65213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60745	0.67941	NaN	1	1	Median	592110000	341600000	250510000	0	0	0	161620000	91448000	70174000	0	0	0	430490000	250150000	180340000	30892	1508	29237	191323;191324	258794;258795	258794			2	
LGYAVYETPTAHNGAK	1	Unmodified	1690.8315	0.83148469	4629	Q9H0E2	TOLLIP	Toll-interacting protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	37.398	37.235	3	2.5842E-05	31625	160511_QHF_FH_JSI12i_3	92.939	86.359			0.64263	0.67394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64263	0.67394	NaN	1	1	Median	48833000	29148000	19686000	0	0	0	0	0	0	0	0	0	48833000	29148000	19686000	30893	4629	29238	191325	258796	258796			1	
LGYEEHIPGQTR	0	Unmodified	1398.6892	0.68917755	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	3	3	32.536	32.054	2;3	7.5555E-05	27060	160511_QHF_FH_JSI12i_3	94.297	83.467			0.92832	0.95784	46.605	8	0	Median	2.6861	2.2607	NaN	1	0	Median	0.88855	1.0671	NaN	1	0	Median	1.0158	1.0315	9.565	3	0	Median	0.62121	0.63692	22.217	3	0	Median	791000000	395780000	395230000	92874000	22427000	70447000	147930000	74605000	73323000	304690000	145580000	159110000	245510000	153170000	92343000	30894	485	29239	191326;191327;191328;191329;191330;191331;191332;191333;191334	258797;258798;258799;258800;258801;258802;258803;258804	258804			8	
LGYFLALTGFR	0	Unmodified	1256.6917	0.69174374	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.931	82.622	2	3.7232E-11	46071	160513_QHF_FH_JSI11Kac_6	138.98	123.36			1.1488	1.2201	53.868	4	0	Median	1.909	1.6594	NaN	1	0	Median	0.96835	1.1466	NaN	1	0	Median	1.363	1.2983	NaN	1	0	Median	0.45756	0.48134	NaN	1	0	Median	1689700000	788170000	901580000	350770000	111780000	238990000	791970000	390200000	401770000	310140000	127970000	182180000	236870000	158220000	78646000	30895	3075	29240	191335;191336;191337;191338	258805;258806;258807;258808;258809;258810;258811	258806			7	
LGYFSVDPDSHQGK	1	Unmodified	1548.7209	0.72087161	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	3	3	47.947	47.621	2;3	1.0982E-14	41949	160511_QHF_FH_JSI11i_3	160.18	150.99			0.51348	0.50325	49.977	6	2	Median	NaN	NaN	NaN	0	0	Median	0.97472	1.1489	NaN	1	1	Median	0.61967	0.60371	38.979	3	1	Median	0.36182	0.36298	20.467	2	0	Median	1838200000	1299500000	538680000	0	0	0	16820000	9169800	7650400	938500000	625020000	313480000	882890000	665330000	217560000	30896	1609	29241	191339;191340;191341;191342;191343;191344;191345	258812;258813;258814;258815;258816;258817;258818;258819;258820;258821;258822;258823;258824	258816			13	
LGYILTCPSNLGTGLR	0	Unmodified	1733.9134	0.91344018	1019	P12532	CKMT1A	Creatine kinase U-type, mitochondrial	no	no	0	0	0	0		By MS/MS			3	0			1								1			81.626	80.307	2	0.0036809	67354	160511_QHF_FH_JSI10i_3	67.776	52.237			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30897	1019	29242	191346	258825	258825			1	
LGYPVLVR	0	Unmodified	915.55419	0.55418762	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	56.773	55.901	2	0.0012167	49387	160511_QHF_FH_JSI10i_2	107.55	90.997			0.8896	1.0489	43.911	7	0	Median	1.9462	1.6164	NaN	1	0	Median	0.72651	0.87028	26.4	2	0	Median	1.1677	1.1441	11.904	2	0	Median	0.48225	0.52145	13.485	2	0	Median	784300000	400590000	383710000	45905000	17664000	28241000	189450000	94798000	94656000	288350000	126050000	162300000	260590000	162080000	98513000	30898	1296	29243	191347;191348;191349;191350;191351;191352;191353	258826;258827;258828;258829;258830;258831	258829			6	
LGYTPVCR	0	Unmodified	964.48004	0.4800364	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	29.141	28.676	2	0.0050585	24813	160511_QHF_FH_JSI11i_3	66.799	43.87			0.87215	0.81209	30.973	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2088	1.3844	NaN	1	0	Median	1.0158	0.94267	NaN	1	0	Median	0.74881	0.75002	NaN	1	0	Median	350160000	184000000	166160000	0	0	0	49325000	19776000	29549000	140690000	72000000	68694000	160140000	92225000	67916000	30899	2629	29244	191354;191355;191356	258832;258833	258832			2	
LGYWNQQMVPIK	1	Unmodified	1475.7595	0.75950572	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	3	1	75.122	74.566	2	1.8524E-07	64663	160511_QHF_FH_JSI12i_3	155.42	155.42			0.51253	0.59512	24.017	7	5	Median	0.96621	0.81994	NaN	1	1	Median	0.44086	0.52848	16.795	2	1	Median	0.65095	0.61272	13.833	3	3	Median	0.39605	0.39927	NaN	1	0	Median	727900000	427260000	300640000	91469000	40731000	50738000	170760000	109170000	61587000	326210000	180600000	145610000	139460000	96762000	42700000	30900	116	29245	191357;191358;191359;191360;191361;191362;191363;191364	258834;258835;258836;258837;258838;258839;258840;258841;258842	258841			9	
LGYWNQQMVPIK	1	Oxidation (M)	1491.7544	0.75442035	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	62.207	61.926	2	0.0053985	53402	160511_QHF_FH_JSI12i_3	59.8	43.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30901	116	29245	191365	258843	258843		50	1	
LHAEAISLLK	1	Unmodified	1093.6495	0.64954457	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.196	51.811	3	0.024597	44323	160511_QHF_FH_JSI12i_2	33.961	15.215			0.62414	0.71122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62414	0.71122	NaN	1	1	Median	10228000	6189000	4038500	0	0	0	0	0	0	0	0	0	10228000	6189000	4038500	30902	4668	29246	191366	258844	258844			1	
LHALLMPPEPIIINHVISVDPNDQK	1	Unmodified	2802.5102	0.5102209	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.32	100.33	4	0.002936	87119	160511_QHF_FH_JSI12i_3	31.176	23.983			1.037	1.0724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.037	1.0724	NaN	1	0	Median	24092000	6904600	17188000	0	0	0	0	0	0	0	0	0	24092000	6904600	17188000	30903	4093	29247	191367	258845;258846	258846			2	
LHAVNAEECNVLQGR	0	Unmodified	1708.8315	0.83150147	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	3	1	37.701	37.475	2;3	2.0074E-07	32782	160511_QHF_FH_JSI11i_3	135.66	117.8			1.0645	0.95688	49.568	5	3	Median	NaN	NaN	NaN	0	0	Median	2.1461	2.6668	NaN	1	1	Median	0.96746	0.90772	12.964	3	2	Median	1.0999	1.1167	NaN	1	0	Median	324650000	168860000	155790000	0	0	0	10682000	3402300	7279500	212370000	113960000	98409000	101600000	51501000	50103000	30904	538	29248	191368;191369;191370;191371;191372	258847;258848;258849;258850;258851;258852;258853	258849			7	
LHAWFSWLHQSQAGPLPLSYR	0	Unmodified	2493.2706	0.27058298	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	4	3	1	2	86.176	78.209	2;3;4	8.7505E-168	44262	160513_QHF_FH_JSI10Kac_6	331.64	301.15			1.0825	1.0814	35.427	10	4	Median	1.4859	1.2565	51.614	4	3	Median	0.81162	0.96453	7.8681	3	1	Median	1.3094	1.2525	NaN	1	0	Median	1.0551	1.1245	14.881	2	0	Median	5614100000	2706700000	2907400000	1046300000	326460000	719810000	4024000000	2115300000	1908700000	126400000	54897000	71505000	417410000	209990000	207420000	30905	2466	29249	191373;191374;191375;191376;191377;191378;191379;191380;191381;191382	258854;258855;258856;258857;258858;258859;258860;258861;258862;258863;258864;258865	258864			12	
LHCWSLTQYSK	1	Unmodified	1421.6762	0.67617003	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	3	1	1	53.814	44.468	2;3	0.0013933	24183	160513_QHF_FH_JSI11Kac_6	48.701	36.724			1.4116	1.6263	33.314	4	1	Median	2.1499	1.8461	NaN	1	1	Median	1.2947	1.5574	NaN	1	0	Median	0.90756	0.8842	NaN	1	0	Median	1.539	1.6982	NaN	1	0	Median	80467000	35674000	44793000	20443000	6440800	14003000	32040000	17893000	14147000	14169000	7295100	6873900	13815000	4045700	9769700	30906	1601	29250	191383;191384;191385;191386;191387;191388	258866;258867;258868;258869;258870;258871	258867			5	
LHDAFFK	1	Unmodified	876.44939	0.4493882	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	2	3	32.258	31.437	3	0.0033377	26746	160511_QHF_FH_JSI11i_3	66.682	47.046			1.0142	1.0116	18.627	8	1	Median	1.3426	1.1334	12.669	2	0	Median	0.70223	0.82105	1.2599	2	0	Median	1.0606	1.0353	6.6666	2	0	Median	0.81339	0.86643	29.314	2	1	Median	930400000	454470000	475930000	159100000	63033000	96066000	184930000	103420000	81512000	392070000	195340000	196730000	194290000	92674000	101620000	30907	2412	29251	191389;191390;191391;191392;191393;191394;191395;191396;191397	258872;258873;258874;258875;258876;258877;258878;258879;258880;258881;258882;258883;258884;258885;258886;258887;258888;258889;258890;258891	258872			20	
LHDALDAK	1	Unmodified	881.46068	0.46068117	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.95		8	1					4		3	2	4	4	14.483	11.294	2;3	0.0031276	7443	160513_QHF_FH_JSI11Kac_5	51.193	19.663			1.0134	0.98303	50.044	13	5	Median	1.1395	0.95669	16.924	3	1	Median	0.82651	0.99758	5.2728	2	0	Median	0.90266	0.91856	74.499	4	2	Median	1.4633	1.5402	48.808	4	2	Median	5208000000	2530700000	2677300000	952340000	456880000	495460000	685350000	391720000	293630000	2339300000	947270000	1392100000	1230900000	734820000	496130000	30908	887	29252	191398;191399;191400;191401;191402;191403;191404;191405;191406;191407;191408;191409;191410	258892;258893;258894;258895;258896;258897;258898;258899;258900;258901;258902;258903;258904	258900			13	
LHDETLTYLNQGQSYEIR	0	Unmodified	2179.0546	0.054561351	2308;5152	Q12800;Q9NZI7	TFCP2;UBP1	Alpha-globin transcription factor CP2;Upstream-binding protein 1	no	no	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	61.602	60.466	3	0.0018932	51992	160511_QHF_FH_JSI12i_2	61.815	52.884			2.2694	2.168	18.57	2	0	Median	2.9487	2.4723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7466	1.9013	NaN	1	0	Median	154060000	48023000	106040000	73446000	18060000	55386000	0	0	0	0	0	0	80615000	29963000	50652000	30909	2308;5152	29253	191411;191412	258905	258905			0	
LHDFGYR	0	Unmodified	906.4348	0.43480077	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	20.687	20.269	3	0.0088996	16944	160511_QHF_FH_JSI11i_3	45.718	35.304			1.2327	1.2506	29.527	3	0	Median	0.92717	0.78543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.432	1.3581	NaN	1	0	Median	1.2327	1.2506	NaN	1	0	Median	261200000	107560000	153640000	11712000	5780300	5931300	0	0	0	108700000	37826000	70878000	140780000	63956000	76826000	30910	1566	29254	191413;191414;191415	258906;258907;258908	258906			3	
LHDIETENQK	1	Unmodified	1225.5939	0.59388018	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0				By MS/MS	2	0		1											1	11.056	10.366	3	0.05132	7920	160511_QHF_FH_JSI12i_2	12.018	3.0642			0.73671	0.83799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73671	0.83799	NaN	1	0	Median	54776000	26333000	28443000	0	0	0	0	0	0	0	0	0	54776000	26333000	28443000	30911	1489;2481	29255	191416	258909	258909			1	
LHDINAQLVEDQGFLDTLK	1	Unmodified	2168.1113	0.11134795	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.619	87.998	3	1.272E-09	76216	160511_QHF_FH_JSI12i_2	113.47	104.53			0.90382	0.91465	6.5188	4	0	Linear	1.2679	1.1022	NaN	1	0	Median	0.82452	0.98427	NaN	1	0	Median	0.95334	0.96229	NaN	1	0	Median	0.85687	0.96134	NaN	1	0	Median	282050000	137210000	144840000	56659000	18877000	37782000	63776000	35593000	28183000	70963000	35840000	35123000	90650000	46900000	43750000	30912	2296	29256	191417;191418;191419;191420	258910;258911;258912;258913;258914;258915;258916;258917;258918;258919;258920;258921;258922;258923	258913			14	
LHDINAQMVEDQGFLDSLR	0	Unmodified	2200.0583	0.05826652	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	84.491	83.735	3	8.0162E-05	74453	160511_QHF_FH_JSI10i_2	79.511	71.422			0.97943	1.1305	19.98	2	1	Median	NaN	NaN	NaN	0	0	Median	1.062	1.3021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90328	0.98156	NaN	1	0	Median	53142000	20169000	32973000	0	0	0	21307000	8975500	12332000	9121700	0	9121700	22713000	11193000	11520000	30913	2046	29257	191421;191422;191423	258924;258925;258926;258927;258928	258928			5	
LHDLLGPHMLR	0	Unmodified	1300.7074	0.70741057	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0				By MS/MS	3	0			1										1	48.82	48.582	4	0.0045059	41655	160511_QHF_FH_JSI12i_3	40.589	34.148			0.55184	0.56398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55184	0.56398	NaN	1	1	Median	15916000	8982200	6934300	0	0	0	0	0	0	0	0	0	15916000	8982200	6934300	30914	2318	29258	191424	258929	258929			1	
LHDLYWQAMK	1	Unmodified	1303.6383	0.63832796	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			53.383	52.452	3	0.0015188	46261	160511_QHF_FH_JSI10i_2	61.78	57.733			0.42793	0.53627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42793	0.53627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104530000	84987000	19546000	0	0	0	104530000	84987000	19546000	0	0	0	0	0	0	30915	4361	29259	191425	258930	258930			1	
LHDMLGPHMLR	0	Unmodified	1318.6638	0.6638312	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							1	2	3	4	44.328	43.761	3;4	0.00031308	37987	160511_QHF_FH_JSI11i_3	64.439	55.926			1.0107	0.94844	34.786	10	1	Median	1.2534	1.0609	NaN	1	0	Median	0.45103	0.52579	52.811	2	1	Median	1.0822	1.0009	14.652	3	0	Median	0.92714	0.93323	19.677	4	0	Median	295230000	157010000	138220000	10388000	3777600	6610000	22187000	17300000	4887000	112610000	57596000	55009000	150050000	78336000	71710000	30916	2578	29260	191426;191427;191428;191429;191430;191431;191432;191433;191434;191435	258931;258932;258933;258934;258935;258936;258937;258938;258939;258940;258941;258942	258933			10	
LHDNPLTDENK	1	Unmodified	1294.6153	0.61534391	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	22.041	21.144	2;3	0.00025214	17475	160511_QHF_FH_JSI12i_2	91.584	80.433			1.0278	0.88776	17.169	7	0	Median	1.0297	0.8786	1.4672	2	0	Median	0.74962	0.9063	9.5122	2	0	Median	0.80085	0.8032	NaN	1	0	Median	1.0906	1.2182	0.66469	2	0	Median	487540000	261610000	225930000	117300000	58552000	58747000	146560000	88840000	57721000	86342000	48450000	37892000	137330000	65766000	71568000	30917	4518	29261	191436;191437;191438;191439;191440;191441;191442	258943;258944;258945;258946;258947;258948;258949;258950;258951;258952;258953;258954	258943			12	
LHDPEGMGIIPR	0	Unmodified	1333.6813	0.6812554	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	49.259	48.451	2;3	2.2522E-05	41783	160511_QHF_FH_JSI11i_2	90.653	81.924			1.0678	1.0622	12.671	7	0	Median	1.1989	1.0106	NaN	1	0	Median	0.93178	1.1297	11.395	2	0	Median	1.0696	1.0647	0.33546	2	0	Median	1.0892	1.1498	26.209	2	0	Median	728290000	366320000	361970000	72446000	31844000	40602000	198520000	107170000	91352000	273520000	136600000	136920000	183810000	90708000	93098000	30918	1400	29262	191443;191444;191445;191446;191447;191448;191449	258955;258956;258957;258958;258959	258957			4	
LHDSKGQTK	2	Acetyl (K)	1054.5407	0.5407224	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.9	0.35							1	6			3	2	2	6.2776	-3.2258	2;3	1.5259E-05	2158	160513_QHF_FH_JSI11Kac_5	119.53	82.464			0.9376	1.0774	16.987	7	0	Median	NaN	NaN	NaN	0	0	Median	0.77309	0.92681	10.898	3	0	Plateau	1.4371	1.4149	3.2126	2	0	Median	0.93765	1.0258	0.35168	2	0	Median	254780000	123040000	131740000	0	0	0	66498000	37271000	29226000	118900000	50897000	68000000	69382000	34871000	34511000	30919	2686	29263	191450;191451;191452;191453;191454;191455;191456	258960;258961;258962	258961	2629		3	
LHDSLAIER	0	Unmodified	1052.5615	0.56145784	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.96		5							4	2	3	2	2	29.472	25.02	3	0.00013315	21600	160511_QHF_FH_JSI9i_2	64.711	43.264			0.90958	0.88639	46.736	9	0	Median	0.85731	0.71571	25.955	2	0	Median	0.74498	0.88639	70.587	3	0	Median	1.2485	1.2407	51.743	2	0	Median	1.0219	1.1577	13.789	2	0	Median	559210000	241710000	317500000	80396000	44019000	36378000	193210000	73201000	120010000	177690000	68129000	109560000	107920000	56363000	51560000	30920	2596	29264	191457;191458;191459;191460;191461;191462;191463;191464;191465	258963;258964;258965;258966;258967;258968;258969;258970	258965			6	
LHDSSGSQVGTGFK	1	Unmodified	1418.679	0.6790068	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	3.99		8	2						1	2	2	4	3	19.942	18.419	2;3	1.5589E-05	15088	160511_QHF_FH_JSI11i_2	99.498	94.219			0.99426	0.96963	11.816	10	1	Median	1.1197	0.94927	3.9443	2	0	Median	0.8353	1.0242	8.682	2	0	Median	1.1152	1.0811	15.701	4	1	Median	0.87282	0.98652	13.105	2	0	Median	706960000	366440000	340520000	103380000	46880000	56501000	172650000	94668000	77986000	297830000	147800000	150030000	133090000	77094000	55999000	30921	1685	29265	191466;191467;191468;191469;191470;191471;191472;191473;191474;191475;191476	258971;258972;258973;258974;258975;258976;258977;258978;258979;258980;258981;258982;258983;258984;258985	258979			15	
LHEAVFLR	0	Unmodified	983.55525	0.55525025	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.135	35.071	3	0.0033892	29717	160511_QHF_FH_JSI12i_3	42.835	29.568			1.4761	1.4091	23.33	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2623	1.1948	NaN	1	0	Median	1.7261	1.6618	NaN	1	0	Median	68581000	26242000	42339000	0	0	0	0	0	0	36025000	13121000	22904000	32556000	13121000	19435000	30922	2203	29266	191477;191478	258986;258987	258987			2	
LHEEEPPQNMKPQSGNDK	2	Unmodified	2076.9535	0.9534671	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		17.913	17.662	3;4	0.00062584	14642	160511_QHF_FH_JSI11i_3	62.203	40.362			0.46015	0.44349	30.19	3	3	Median	NaN	NaN	NaN	0	0	Median	0.55674	0.70729	NaN	1	1	Median	0.44034	0.42222	6.9517	2	2	Median	NaN	NaN	NaN	0	0	Median	114730000	78425000	36308000	0	0	0	13710000	10606000	3104800	101020000	67819000	33203000	0	0	0	30923	4535	29267	191479;191480;191481	258988;258989;258990;258991;258992;258993	258989			6	
LHEEGIIYR	0	Unmodified	1128.5928	0.59275797	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	29.372	28.617	2;3	2.6336E-06	24449	160511_QHF_FH_JSI12i_2	97.431	67.176			1.0374	1.0547	4.6423	8	1	Median	1.2527	1.058	0.84614	2	1	Median	0.81646	1.0077	5.3287	2	0	Median	1.0325	1.0452	1.6855	2	0	Median	1.0467	1.1189	2.4367	2	0	Median	1332800000	677210000	655570000	191140000	90065000	101070000	351850000	184970000	166880000	555320000	282140000	273180000	234470000	120030000	114440000	30924	1283	29268	191482;191483;191484;191485;191486;191487;191488;191489	258994;258995;258996;258997;258998;258999	258994			6	
LHESYGNPLR	0	Unmodified	1184.5938	0.5938206	710	O95619	YEATS4	YEATS domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.929	24.904	3	0.048155	20722	160511_QHF_FH_JSI12i_3	18.531	12.832			1.1684	1.1705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1684	1.1705	NaN	1	1	Median	93071000	40110000	52961000	0	0	0	0	0	0	0	0	0	93071000	40110000	52961000	30925	710	29269	191490	259000	259000			1	
LHEVTQK	1	Unmodified	853.46577	0.46576654	240	O15049	N4BP3	NEDD4-binding protein 3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				7.9365	7.4604	2	0.0572	5281	160511_QHF_FH_JSI9i_2	41.502	2.7105			1.222	1.065	NaN	1	0	Median	1.222	1.065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124050000	58424000	65627000	124050000	58424000	65627000	0	0	0	0	0	0	0	0	0	30926	240	29270	191491	259001	259001			1	
LHFFMPGFAPLTAR	0	Unmodified	1603.8333	0.83333937	2430	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	2	3	2	1	88.397	81.272	2;3	4.2358E-17	45042	160513_QHF_FH_JSI10Kac_6	126.34	118.3			0.98102	1.0412	7.6579	8	1	Median	1.2997	1.1228	0.63376	2	1	Median	0.78241	0.94881	7.3304	3	0	Median	1.0859	1.0422	2.3338	2	0	Median	0.92058	0.95785	NaN	1	0	Median	1314100000	707890000	606200000	294360000	133700000	160660000	717310000	424620000	292690000	180900000	81630000	99272000	121520000	67939000	53577000	30927	2430	29271	191492;191493;191494;191495;191496;191497;191498;191499	259002;259003;259004;259005;259006;259007;259008;259009;259010;259011;259012;259013	259010			12	
LHFFMPGFAPLTAR	0	Oxidation (M)	1619.8283	0.82825399	2430	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	1	0	By matching			By MS/MS	16	0									2	1			1	81.445	72.407	3	0.00036734	38432	160513_QHF_FH_JSI12Kac_6	68.83	58.699			1.5382	1.4656	20.612	2	0	Median	1.9607	1.6956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2068	1.2669	NaN	1	0	Median	66609000	26878000	39731000	34434000	14718000	19716000	0	0	0	0	0	0	32176000	12160000	20015000	30928	2430	29271	191500;191501	259014	259014		1952	1	
LHFFMPGFAPLTSR	0	Oxidation (M)	1635.8232	0.82316861	2075;872;2477;811;4440;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.36		1	5	2	2	1			15	4	6	6	10	82.56	75.498	2;3	8.9078E-24	38010	160513_QHF_FH_JSI12Kac_6	150.04	135.88			1.0012	0.9954	22.211	25	12	Median	1.3016	1.2889	16.535	4	2	Linear	0.87236	0.99021	20.611	5	2	Median	0.99763	0.96329	7.8574	6	2	Median	0.99294	1.0384	29.411	10	6	Median	34718000000	16846000000	17872000000	10593000000	4285600000	6307500000	8687200000	4739600000	3947600000	5545800000	3030000000	2515800000	9892200000	4790800000	5101400000	30929	872;2075;2477;2824;811;4440	29272	191502;191503;191504;191505;191506;191507;191508;191509;191510;191511;191512;191513;191514;191515;191516;191517;191518;191519;191520;191521;191522;191523;191524;191525;191526;191527	259015;259016;259017;259018;259019;259020;259021;259022;259023;259024;259025;259026;259027;259028;259029;259030;259031;259032;259033;259034;259035;259036;259037;259038;259039;259040;259041;259042;259043;259044;259045;259046;259047;259048	259038		327	34	
LHFFMPGFAPLTSR	0	Unmodified	1619.8283	0.82825399	2075;872;2477;811;4440;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.72		6	23	2	2				10	13	11	10	9	93.561	90.277	2;3	6.2502E-22	82133	160511_QHF_FH_JSI12i_3	145.29	125.28			0.91857	0.892	23.892	35	11	Median	1.1035	0.91456	32.67	10	3	Median	0.73575	0.85574	15.376	11	4	Median	0.92215	0.88533	15.268	8	1	Median	1.0502	1.0681	30.661	6	3	Median	85360000000	39095000000	46265000000	34203000000	12591000000	21612000000	32462000000	16460000000	16002000000	3101700000	1639500000	1462200000	15594000000	8404900000	7189000000	30930	872;2075;2477;2824;811;4440	29272	191528;191529;191530;191531;191532;191533;191534;191535;191536;191537;191538;191539;191540;191541;191542;191543;191544;191545;191546;191547;191548;191549;191550;191551;191552;191553;191554;191555;191556;191557;191558;191559;191560;191561;191562;191563;191564;191565;191566;191567;191568;191569;191570	259049;259050;259051;259052;259053;259054;259055;259056;259057;259058;259059;259060;259061;259062;259063;259064;259065;259066;259067;259068;259069;259070;259071;259072;259073;259074;259075;259076;259077;259078;259079;259080;259081;259082;259083;259084;259085;259086;259087;259088;259089;259090;259091;259092;259093;259094;259095;259096;259097;259098;259099;259100;259101;259102;259103;259104;259105;259106;259107;259108;259109;259110;259111;259112;259113;259114;259115;259116;259117;259118;259119;259120;259121;259122;259123;259124;259125	259113			76	
LHFLMTGYTPLTTDQSVASVR	0	Unmodified	2336.1835	0.18346703	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	2	2	2	1	85.027	81.929	3	3.6534E-18	71404	160511_QHF_FH_JSI10i_3	140.06	125.05			0.88107	1.0296	27.819	7	4	Median	1.3608	1.12	2.2569	2	1	Median	0.8352	0.97087	8.3126	2	2	Median	1.2072	1.174	62.473	2	1	Median	0.80571	0.90697	NaN	1	0	Median	578060000	252670000	325390000	220980000	78072000	142910000	123190000	72047000	51145000	162390000	60884000	101510000	71494000	41669000	29824000	30931	1223	29273	191571;191572;191573;191574;191575;191576;191577	259126;259127;259128;259129;259130;259131;259132;259133	259128			8	
LHFLMTGYTPLTTDQSVASVR	0	Oxidation (M)	2352.1784	0.17838166	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	78.02	69.978	3	4.7122E-22	38980	160513_QHF_FH_JSI10Kac_6	142.84	126.94			1.2048	1.2022	19.837	3	0	Plateau	1.6312	1.3955	NaN	1	0	Median	0.88979	1.0357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88844	0.95836	NaN	1	0	Median	284080000	96811000	187270000	152260000	40780000	111480000	106930000	45791000	61138000	0	0	0	24893000	10241000	14653000	30932	1223	29273	191578;191579;191580	259134;259135;259136	259136		854	1	
LHFLMTGYTPLTTDQSVASVRK	1	Unmodified	2464.2784	0.27843005	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	1		By MS/MS			16	0									3		3			77.079	70.874	3;4	7.6701E-09	38780	160513_QHF_FH_JSI10Kac_6	140.63	125.5			1.2744	1.509	10.367	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2744	1.509	10.367	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	355840000	163800000	192040000	0	0	0	355840000	163800000	192040000	0	0	0	0	0	0	30933	1223	29274	191581;191582;191583	259137;259138;259139	259139			3	
LHGELQDR	0	Unmodified	966.48829	0.4882929	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.44	0.497		5	4							2		3	4	8.7283	8.4771	2;3	0.0018085	5837	160511_QHF_FH_JSI12i_3	49.57	35.8			1.0373	0.97535	22.377	9	0	Median	1.2135	1.0352	15.018	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0373	0.98316	16.755	3	0	Median	0.78606	0.8418	30.178	4	0	Median	1403900000	698050000	705860000	170240000	83127000	87108000	0	0	0	595360000	308100000	287260000	638310000	306820000	331490000	30934	4940	29275	191584;191585;191586;191587;191588;191589;191590;191591;191592	259140;259141;259142;259143;259144;259145;259146	259146			7	
LHGELQDRK	1	Unmodified	1094.5833	0.58325592	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		6.6143	6.6143	3	0.0069161	4401	160511_QHF_FH_JSI11i_3	32.549	19.593			0.58944	0.55155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58944	0.55155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95318000	58911000	36407000	0	0	0	0	0	0	95318000	58911000	36407000	0	0	0	30935	4940	29276	191593	259147	259147			1	
LHGGTPANFLDVGGGATVHQVTEAFK	1	Unmodified	2622.319	0.31904931	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	80.6	80.247	3;4	1.545E-14	69312	160511_QHF_FH_JSI12i_3	96.052	93.328			0.96043	0.9333	9.1532	5	0	Median	NaN	NaN	NaN	0	0	Median	0.96043	1.1216	NaN	1	0	Median	1.0014	0.95403	3.1061	2	0	Median	0.887	0.90026	0.77289	2	0	Median	643230000	314760000	328460000	0	0	0	25264000	11256000	14008000	246730000	126750000	119980000	371230000	176760000	194480000	30936	5223	29277	191594;191595;191596;191597;191598	259148;259149;259150;259151;259152;259153;259154;259155;259156;259157;259158;259159;259160	259159			12	
LHGLFAVYKPPGLK	2	Unmodified	1538.8973	0.89731983	742	O95900	TRUB2	Probable tRNA pseudouridine synthase 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	10.4	6.43			3						4	3		2	2	70.23	64.817	3;4	0.0010655	33468	160513_QHF_FH_JSI12Kac_6	71.176	59.702			0.80964	0.82477	39.442	7	7	Median	0.98186	0.82672	24.984	3	3	Median	NaN	NaN	NaN	0	0	Median	0.88068	0.83567	48.736	2	2	Median	0.53922	0.55733	55.428	2	2	Median	261260000	137720000	123540000	98302000	48456000	49846000	0	0	0	113310000	56433000	56880000	49643000	32834000	16809000	30937	742	29278	191599;191600;191601;191602;191603;191604;191605	259161;259162;259163;259164;259165;259166;259167	259167			7	
LHGTAQQLLQDSK	1	Unmodified	1437.7576	0.75759147	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2		1	4	3	34.89	32.356	2;3	2.8524E-05	27230	160511_QHF_FH_JSI12i_3	118.76	77.764			0.873	0.86437	53.592	8	7	Median	NaN	NaN	NaN	0	0	Median	1.277	1.5178	NaN	1	1	Median	1.1286	1.0685	45.228	4	4	Median	0.7568	0.82317	56.308	3	2	Median	961750000	429480000	532270000	0	0	0	77720000	32151000	45569000	768160000	334450000	433720000	115870000	62881000	52990000	30938	2732	29279	191606;191607;191608;191609;191610;191611;191612;191613	259168;259169;259170;259171;259172;259173;259174;259175;259176;259177	259175			10	
LHGTVVEGR	0	Unmodified	966.52468	0.52467841	314	O43251;Q9NWB1	RBFOX2;RBFOX1	RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 1	yes	no	0	0	0	0		By MS/MS			2	0		1									1			10.68	10.153	2	0.017239	8070	160511_QHF_FH_JSI10i_2	45.081	11.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30939	314	29280	191614	259178	259178			1	
LHGVNINVEASK	1	Unmodified	1279.6884	0.68844927	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2		1	2	3	38.368	35.296	2;3	3.8817E-05	30605	160511_QHF_FH_JSI11i_3	74.611	66.124			0.77855	0.80635	21.228	6	0	Median	NaN	NaN	NaN	0	0	Median	0.83176	0.96816	NaN	1	0	Median	0.7306	0.67876	18.27	2	0	Median	0.69138	0.71358	20.97	3	0	Plateau	545480000	303170000	242320000	0	0	0	11875000	6074100	5800700	219920000	117930000	101990000	313680000	179160000	134520000	30940	4498;4343	29281	191615;191616;191617;191618;191619;191620	259179;259180;259181;259182;259183;259184;259185;259186	259179			8	
LHGWAPGPDYQK	1	Unmodified	1367.6622	0.66223452	2903	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.965	34.837	2	0.024212	29552	160511_QHF_FH_JSI12i_3	42.743	32.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30941	2903	29282	191621	259187	259187			1	
LHHAADLEK	1	Unmodified	1032.5352	0.53524309	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	7.7582	7.8559	2;3	0.00085962	5365	160511_QHF_FH_JSI12i_3	59.426	42.755			1.0436	1.0434	8.3706	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0436	1.0434	8.3706	2	0	Median	289570000	110350000	179220000	0	0	0	0	0	0	0	0	0	289570000	110350000	179220000	30942	2549	29283	191622;191623	259188;259189	259189			2	
LHHVVVYFIQNQAPK	1	Unmodified	1791.9784	0.9784237	5307	Q9UHP3	USP25	Ubiquitin carboxyl-terminal hydrolase 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	62.779	53.566	3;4	5.2699E-09	29041	160513_QHF_FH_JSI10Kac_6	118.87	102.5			1.0319	1.1229	61.27	6	2	Median	0.63605	0.54082	NaN	1	0	Median	0.87464	1.0489	6.5852	2	0	Median	1.168	1.1474	NaN	1	0	Median	2.4086	2.596	19.876	2	2	Median	222050000	95110000	126940000	43965000	23108000	20857000	86437000	38947000	47490000	43369000	18756000	24612000	48280000	14299000	33981000	30943	5307	29284	191624;191625;191626;191627;191628;191629	259190;259191;259192;259193;259194;259195;259196;259197;259198;259199;259200	259198			11	
LHIEALLHGNITK	1	Unmodified	1457.8354	0.83544786	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	66.074	65.184	4	1.9654E-05	55357	160511_QHF_FH_JSI12i_3	96.059	82.396			1.0614	0.97764	8.9995	2	0	Median	1.2302	1.0419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91575	0.91736	NaN	1	0	Median	102050000	52567000	49480000	11516000	5250300	6265600	0	0	0	0	0	0	90531000	47317000	43214000	30944	1060	29285	191630;191631	259201;259202;259203;259204	259203			4	
LHIEWISK	1	Unmodified	1024.5706	0.57056597	2539	Q14517	FAT1	Protocadherin Fat 1;Protocadherin Fat 1, nuclear form	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.019	55.771	3	0.021822	47911	160511_QHF_FH_JSI12i_3	31.074	14.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30945	2539	29286	191632	259205	259205			1	
LHIFNAK	1	Unmodified	841.48102	0.48102268	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.25	5.63			6						2	3		3	2	30.754	27.897	2;3	0.0016715	22641	160511_QHF_FH_JSI12i_3	88.734	44.123			1.4301	1.2627	53.769	7	0	Median	1.1762	0.98831	34.648	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4406	1.3583	31.748	3	0	Median	0.97324	0.9891	115.08	2	0	Median	1010100000	447750000	562400000	206190000	81855000	124330000	0	0	0	306530000	142160000	164370000	497420000	223730000	273690000	30946	3426	29287	191633;191634;191635;191636;191637;191638;191639;191640	259206;259207;259208;259209;259210;259211;259212;259213;259214;259215	259214			9	
LHIFNAKK	2	Acetyl (K)	1011.5866	0.58655038	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		45.13	35.49	3	0.018314	19362	160513_QHF_FH_JSI11Kac_6	47.349	39.167			9.0348	9.0487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.0348	9.0487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2926500	210310	2716200	0	0	0	0	0	0	2926500	210310	2716200	0	0	0	30947	3426	29288	191641	259216	259216	2860		1	
LHIIEVGQPAAGNQPFVK	1	Unmodified	1917.0472	0.047231549	1807	P53675	CLTCL1	Clathrin heavy chain 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.882	65.735	3	8.0992E-06	58493	160511_QHF_FH_JSI11i_3	84.842	75.427			0.57836	0.55133	2.0357	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61496	0.55932	NaN	1	0	Median	0.54394	0.54345	NaN	1	1	Median	94830000	65529000	29301000	0	0	0	0	0	0	40635000	25796000	14839000	54195000	39733000	14462000	30948	1807	29289	191642;191643	259217;259218;259219	259217			3	
LHIIEVGTPPTGNQPFPK	1	Unmodified	1944.0469	0.046897198	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.16		15	11						3	6	7	9	7	69.532	67.849	2;3;4	1.9658E-74	60237	160511_QHF_FH_JSI11i_3	208.72	164.53			0.99299	1.0036	22.859	27	15	Median	1.193	0.98635	15.148	5	3	Median	0.98718	1.1319	20.17	7	4	Median	1.0976	1.0715	21.811	8	5	Median	0.77627	0.81886	21.389	7	3	Median	12171000000	6240000000	5931100000	1167100000	537400000	629650000	2744500000	1481100000	1263400000	4278000000	2154900000	2123100000	3981500000	2066600000	1915000000	30949	2155	29290	191644;191645;191646;191647;191648;191649;191650;191651;191652;191653;191654;191655;191656;191657;191658;191659;191660;191661;191662;191663;191664;191665;191666;191667;191668;191669;191670;191671;191672	259220;259221;259222;259223;259224;259225;259226;259227;259228;259229;259230;259231;259232;259233;259234;259235;259236;259237;259238;259239;259240;259241;259242;259243;259244;259245;259246;259247;259248;259249;259250;259251;259252;259253;259254;259255;259256;259257;259258;259259;259260;259261;259262;259263;259264;259265;259266;259267;259268;259269;259270;259271;259272	259228			53	
LHIIEVGTPPTGNQPFPKK	2	Unmodified	2072.1419	0.14186022	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	60.118	59.058	3;4	4.0291E-05	49574	160511_QHF_FH_JSI10i_3	65.231	61.336			1.0573	0.99349	22.722	6	1	Median	0.96691	0.78218	28.122	2	1	Median	0.98061	1.1338	12.982	2	0	Median	1.0416	0.94817	NaN	1	0	Median	1.1567	1.1188	NaN	1	0	Median	234790000	115850000	118940000	78546000	37035000	41512000	91239000	43732000	47507000	32388000	20404000	11983000	32618000	14677000	17941000	30950	2155	29291	191673;191674;191675;191676;191677;191678	259273;259274;259275;259276;259277;259278;259279;259280;259281	259278			9	
LHILASGADVTSANAK	1	Unmodified	1566.8366	0.83657007	4957	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	43.017	42.863	2;3	0.00018683	36632	160511_QHF_FH_JSI12i_3	89.548	66.172			0.63992	0.63665	15.253	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59597	0.57156	NaN	1	0	Median	0.6871	0.70916	NaN	1	0	Median	111620000	65415000	46210000	0	0	0	0	0	0	42269000	22965000	19304000	69356000	42450000	26906000	30951	4957	29292	191679;191680;191681	259282;259283;259284	259284			3	
LHILLQNGK	1	Unmodified	1034.6237	0.62366417	4869	Q9HD23	MRS2	Magnesium transporter MRS2 homolog, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	36.374	36.229	3	0.00046875	30795	160511_QHF_FH_JSI12i_3	75.213	61.006			1.0584	1.0827	36.96	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0584	1.0827	36.96	2	2	Median	95509000	47348000	48161000	0	0	0	0	0	0	0	0	0	95509000	47348000	48161000	30952	4869	29293	191682;191683	259285;259286	259286			2	
LHIPYAGETLK	1	Unmodified	1240.6816	0.68157298	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	53.938	53.649	2;3	0.00046903	47513	160511_QHF_FH_JSI11i_3	59.542	49.537			1.3131	1.2576	15.608	4	2	Median	NaN	NaN	NaN	0	0	Median	1.3202	1.6715	NaN	1	1	Median	1.3401	1.2576	4.893	2	0	Median	1.1645	1.191	NaN	1	1	Median	274270000	121080000	153190000	0	0	0	40990000	14428000	26562000	122060000	47365000	74696000	111220000	59286000	51934000	30953	5110	29294	191684;191685;191686;191687	259287;259288;259289;259290;259291;259292;259293	259288			7	
LHISMLALEK	1	Unmodified	1153.6529	0.65291539	634	O94967	WDR47	WD repeat-containing protein 47	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			66.455	64.957	3	0.012554	54398	160511_QHF_FH_JSI10i_3	41.704	29.838			0.37548	0.44332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37548	0.44332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8784900	6503600	2281300	0	0	0	8784900	6503600	2281300	0	0	0	0	0	0	30954	634	29295	191688	259294	259294			1	
LHISPSNMTNQNTNEYLEK	1	Oxidation (M)	2248.043	0.043010387	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								3	2	1	42.59	41.932	3	5.0604E-12	36953	160511_QHF_FH_JSI11i_3	133.93	118.34			0.82999	0.81962	30.721	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.193	41.761	2	1	Median	0.84168	0.79796	3.7868	2	1	Median	0.76976	0.78025	NaN	1	0	Median	221980000	117530000	104450000	0	0	0	65866000	27942000	37924000	121560000	70141000	51423000	34550000	19447000	15103000	30955	2438	29296	191689;191690;191691;191692;191693;191694	259295;259296;259297;259298;259299;259300	259297		1954	6	
LHISPSNMTNQNTNEYLEK	1	Unmodified	2232.0481	0.048095765	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.97		3	7						2	3	4	4	1	54.897	53.189	2;3	1.5179E-18	47383	160511_QHF_FH_JSI11i_3	160.45	144.85			0.99146	0.97886	18.289	9	0	Median	1.4335	1.1982	12.035	2	0	Median	0.8124	0.96676	1.7581	2	0	Median	1.1061	1.0309	22.186	4	0	Median	0.81775	0.82233	NaN	1	0	Median	1840200000	943460000	896780000	221350000	92851000	128500000	601260000	296830000	304430000	826040000	441980000	384060000	191590000	111800000	79792000	30956	2438	29296	191695;191696;191697;191698;191699;191700;191701;191702;191703;191704;191705;191706	259301;259302;259303;259304;259305;259306;259307;259308;259309;259310;259311;259312;259313;259314;259315;259316;259317;259318;259319;259320;259321;259322	259303			21	
LHISPSNMTNQNTPEYMEK	1	Oxidation (M)	2249.0093	0.0092674174	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								3	2	1	43.452	42.486	3	6.0153E-10	38466	160511_QHF_FH_JSI11i_3	122.29	112.73			0.98509	1.0909	6.1339	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98361	1.1203	3.883	2	0	Median	1.1542	1.0919	NaN	1	0	Median	0.94132	0.99345	NaN	1	0	Median	258590000	140140000	118450000	0	0	0	103460000	63624000	39840000	106520000	50691000	55826000	48613000	25826000	22787000	30957	3882	29297	191707;191708;191709;191710;191711;191712	259323;259324;259325;259326;259327;259328;259329;259330;259331;259332	259324		2319;2320	10	
LHISPSNMTNQNTPEYMEK	1	Unmodified	2233.0144	0.014352795	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	2	3	2	52.174	51.365	2;3	4.8446E-25	44442	160511_QHF_FH_JSI11i_2	176.94	168.12			1.0778	0.95271	16.355	9	2	Median	1.2483	1.0315	18.155	2	1	Median	0.79115	0.95256	0.022414	2	0	Median	1.0982	1.1373	14.737	3	0	Median	0.83222	0.89866	32.012	2	1	Median	2202700000	964340000	1238400000	243820000	128170000	115650000	582090000	272170000	309910000	1179900000	486860000	692990000	196960000	77129000	119830000	30958	3882	29297	191713;191714;191715;191716;191717;191718;191719;191720;191721;191722	259333;259334;259335;259336;259337;259338;259339;259340;259341;259342;259343;259344;259345;259346;259347;259348;259349;259350;259351;259352;259353;259354;259355;259356	259351			24	
LHISQLQHENSILK	1	Unmodified	1658.9104	0.91040372	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	48.853	48.124	3;4	0.00017514	40505	160511_QHF_FH_JSI12i_3	68.944	55.807			0.89957	0.9175	36.145	5	1	Median	0.87129	0.70093	NaN	1	0	Median	1.5003	1.7491	NaN	1	0	Median	0.78689	0.74931	NaN	1	1	Median	0.93039	0.94681	4.4466	2	0	Median	497120000	246900000	250220000	92182000	48542000	43640000	62499000	23428000	39071000	127770000	72166000	55609000	214670000	102770000	111900000	30959	2516	29298	191723;191724;191725;191726;191727	259357;259358;259359;259360;259361;259362;259363	259362			7	
LHITPEK	1	Unmodified	836.4756	0.47560295	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		15.976	15.976	3	0.048677	13126	160511_QHF_FH_JSI11i_3	26.962	6.4072			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92398000	0	92398000	0	0	0	0	0	0	92398000	0	92398000	0	0	0	30960	4991	29299	191728	259364	259364			1	
LHIVALIAQK	1	Unmodified	1104.7019	0.70191449	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	64.958	59.372	2;3	3.8618E-08	32355	160513_QHF_FH_JSI11Kac_6	112.84	98.175			0.97913	0.99912	43.167	14	2	Median	0.97082	0.85105	3.9526	4	0	Linear	0.84853	0.99912	85.219	4	2	Median	1.0857	1.0374	10.63	3	0	Plateau	1.0969	1.1801	11.363	3	0	Plateau	929210000	477960000	451240000	243950000	121660000	122300000	255400000	146790000	108610000	284910000	138300000	146610000	144940000	71212000	73723000	30961	2485	29300	191729;191730;191731;191732;191733;191734;191735;191736;191737;191738;191739;191740;191741;191742	259365;259366;259367;259368;259369;259370;259371;259372;259373;259374;259375;259376;259377;259378;259379;259380;259381;259382;259383;259384	259371			19	
LHIVQVVCK	1	Unmodified	1094.627	0.62703499	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.56		3	9					1	9	5	8	5	4	43.521	38.989	2;3	7.9675E-08	21425	160513_QHF_FH_JSI11Kac_6	119.27	111.35			1.0131	0.96674	42.612	21	6	Median	1.2466	1.0098	21.57	5	1	Linear	0.96522	1.1555	60.615	7	4	Median	0.82094	0.77773	30.466	5	1	Median	1.3522	1.424	7.3682	4	0	Median	13509000000	5864600000	7644800000	2330300000	889910000	1440400000	3108300000	1568300000	1540000000	3648700000	1778500000	1870200000	4422200000	1627800000	2794300000	30962	119	29301	191743;191744;191745;191746;191747;191748;191749;191750;191751;191752;191753;191754;191755;191756;191757;191758;191759;191760;191761;191762;191763;191764	259385;259386;259387;259388;259389;259390;259391;259392;259393;259394;259395;259396;259397;259398;259399;259400;259401;259402;259403;259404;259405;259406;259407;259408;259409;259410;259411;259412;259413;259414;259415;259416;259417;259418;259419;259420;259421;259422;259423;259424;259425;259426;259427;259428;259429;259430;259431	259402			47	
LHIVQVVCKK	2	Unmodified	1222.722	0.72199801	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			40.102	31.49	3	0.034472	17489	160513_QHF_FH_JSI10Kac_6	32.606	15.58			0.38473	0.45214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38473	0.45214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5875800	3692000	2183700	0	0	0	5875800	3692000	2183700	0	0	0	0	0	0	30963	119	29302	191765	259432	259432			1	
LHKPPADSGVDLR	1	Unmodified	1403.7521	0.75211216	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		3	18							7	8	3	3	22.553	21.716	2;3;4	4.1859E-05	17836	160511_QHF_FH_JSI11i_3	125.75	91.36			0.95348	0.85945	46.481	17	5	Median	1.1333	0.92317	48.71	6	2	Median	0.69781	0.8257	33.009	6	2	Median	0.7511	0.70654	30.743	3	1	Plateau	1.2646	1.2504	69.587	2	0	Median	3411200000	1744500000	1666700000	1064000000	453180000	610840000	1002800000	551550000	451280000	1067400000	603560000	463880000	276960000	136240000	140720000	30964	289	29303	191766;191767;191768;191769;191770;191771;191772;191773;191774;191775;191776;191777;191778;191779;191780;191781;191782;191783;191784;191785;191786	259433;259434;259435;259436;259437;259438;259439;259440;259441;259442;259443;259444;259445;259446;259447;259448;259449;259450;259451;259452;259453;259454;259455;259456;259457;259458;259459;259460;259461;259462;259463;259464;259465;259466;259467;259468;259469;259470;259471;259472;259473;259474;259475;259476	259435			44	
LHLAIPTR	0	Unmodified	919.56034	0.56033563	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	44.771	43.899	3	0.0011647	36203	160511_QHF_FH_JSI9i_3	67.169	46.615			0.81272	0.83177	13.788	5	0	Median	1.0792	0.88802	NaN	1	0	Median	0.61812	0.72045	20.319	2	0	Median	0.86711	0.80815	NaN	1	0	Median	0.81272	0.83906	NaN	1	0	Median	408380000	222340000	186040000	138110000	67607000	70501000	128060000	80447000	47611000	67246000	35788000	31458000	74971000	38497000	36473000	30965	4559	29304	191787;191788;191789;191790;191791	259477;259478;259479;259480;259481;259482;259483;259484;259485;259486	259482			10	
LHLFPDEYIPEDILK	1	Unmodified	1840.9611	0.96110188	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.04	100.92	3	0.011433	88592	160511_QHF_FH_JSI11i_2	58.071	46.81			1.0046	1.0042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.0042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60186000	32173000	28012000	0	0	0	0	0	0	60186000	32173000	28012000	0	0	0	30966	4543	29305	191792	259487	259487			0	
LHLGFIEIR	0	Unmodified	1096.6393	0.63931423	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.47		4	14						5	10	8	3	2	80.174	77.541	2;3	1.2268E-11	40033	160513_QHF_FH_JSI10Kac_6	131.06	102.85			1.0369	0.99498	26.619	21	3	Median	1.1707	0.97605	19.462	8	2	Median	1.0544	1.6721	39.289	8	1	Linear	1.0809	1.0074	10.305	3	0	Plateau	0.94325	0.95824	5.3213	2	0	Median	3445200000	1626700000	1818500000	1148200000	444860000	703340000	1680500000	881370000	799080000	267710000	129330000	138370000	348820000	171110000	177710000	30967	5562	29306	191793;191794;191795;191796;191797;191798;191799;191800;191801;191802;191803;191804;191805;191806;191807;191808;191809;191810;191811;191812;191813;191814;191815	259488;259489;259490;259491;259492;259493;259494;259495;259496;259497;259498;259499;259500;259501;259502;259503;259504;259505;259506;259507;259508;259509;259510;259511;259512;259513;259514;259515;259516;259517;259518;259519;259520;259521;259522;259523;259524;259525;259526;259527;259528;259529;259530;259531;259532;259533;259534;259535;259536;259537;259538	259537			51	
LHLGFIQIR	0	Unmodified	1095.6553	0.65529865	4910	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	4	2	77.191	70.282	2;3	8.0204E-34	38221	160513_QHF_FH_JSI10Kac_6	176.4	94.853			0.9461	0.95882	13.118	8	0	Median	1.2114	1.0468	3.9985	2	0	Median	0.73668	0.86449	6.2249	2	0	Median	1.1548	1.1012	2.4112	2	0	Median	0.77867	0.83412	2.2418	2	0	Median	1651800000	867210000	784560000	286250000	93744000	192510000	951380000	564270000	387110000	293580000	136020000	157560000	120550000	73174000	47380000	30968	4910	29307	191816;191817;191818;191819;191820;191821;191822;191823;191824;191825	259539;259540;259541;259542;259543;259544;259545;259546;259547;259548;259549;259550;259551;259552;259553	259552			15	
LHLGHTFSLSK	1	Unmodified	1238.6772	0.6771563	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.28			17						10	10	9	3	5	48.687	44.469	2;3;4	2.7613E-07	38277	160511_QHF_FH_JSI11i_3	96.89	93.245			0.92516	1.0044	62.461	26	7	Median	0.83967	0.70134	52.119	9	2	Median	0.66429	0.78586	90.11	9	2	Median	1.2077	1.147	33.949	3	1	Plateau	1.208	1.3083	30.205	5	2	Median	1956900000	878140000	1078700000	401520000	197830000	203690000	278070000	161000000	117070000	342890000	140420000	202460000	934410000	378890000	555520000	30969	5215	29308	191826;191827;191828;191829;191830;191831;191832;191833;191834;191835;191836;191837;191838;191839;191840;191841;191842;191843;191844;191845;191846;191847;191848;191849;191850;191851;191852	259554;259555;259556;259557;259558;259559;259560;259561;259562;259563;259564;259565;259566;259567;259568;259569;259570;259571;259572;259573;259574;259575;259576;259577;259578;259579;259580;259581;259582	259556			27	
LHLGIPEAVFVEDVDSFMK	1	Unmodified	2145.0816	0.081627724	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.02	101.91	3	0.0001258	89709	160511_QHF_FH_JSI11i_2	68.41	54.101			0.59085	0.60315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59085	0.60315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136000000	93761000	42243000	0	0	0	0	0	0	136000000	93761000	42243000	0	0	0	30970	1961	29309	191853	259583	259583			1	
LHLGTTQNSLTEADFR	0	Unmodified	1801.8959	0.89587586	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			57.259	55.718	3	0.00046342	46596	160511_QHF_FH_JSI10i_3	50.653	43.062			1.2137	1.4097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2137	1.4097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38165000	17888000	20277000	0	0	0	38165000	17888000	20277000	0	0	0	0	0	0	30971	507	29310	191854	259584	259584			1	
LHLIAQELPFDR	0	Unmodified	1450.7932	0.79324869	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		74.047	73.332	3	4.6511E-05	65279	160511_QHF_FH_JSI11i_3	65.179	60.613			0.57387	0.59995	27.982	2	1	Median	NaN	NaN	NaN	0	0	Median	0.42703	0.49224	NaN	1	1	Median	0.7712	0.73121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35139000	23793000	11346000	0	0	0	11069000	7912000	3156700	24070000	15881000	8189500	0	0	0	30972	141	29311	191855;191856	259585;259586	259585			2	
LHLLLMPPK	1	Unmodified	1060.6467	0.6467078	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.024	64.527	3	0.0029081	54118	160511_QHF_FH_JSI10i_3	50.607	42.682			1.7847	1.5414	NaN	1	1	Median	1.7847	1.5414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5739400	1917800	3821600	5739400	1917800	3821600	0	0	0	0	0	0	0	0	0	30973	820	29312	191857;191858	259587;259588	259587			2	
LHLLSVLK	1	Unmodified	921.60114	0.60113781	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	59.829	59.694	2	0.052344	51470	160511_QHF_FH_JSI12i_3	36.76	26.346			1.0578	1.0244	5.8176	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0415	0.98307	NaN	1	0	Median	1.0742	1.0674	NaN	1	0	Median	179490000	78874000	100620000	0	0	0	0	0	0	75893000	35904000	39988000	103600000	42970000	60629000	30974	3888	29313	191859;191860	259589	259589			1	
LHLPIGDSASNLLFK	1	Unmodified	1623.8984	0.89844205	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							3	1	1	1	90.931	90.315	3	1.2278E-10	78283	160511_QHF_FH_JSI12i_3	150.49	141.35			0.88798	0.89669	44.462	6	2	Median	1.3143	1.0952	60.438	3	2	Plateau	0.71093	0.80876	NaN	1	0	Median	1.0985	1.0218	NaN	1	0	Median	0.99638	0.99419	NaN	1	0	Median	315790000	166510000	149280000	51336000	31379000	19957000	36037000	16345000	19692000	103500000	50857000	52645000	124910000	67929000	56981000	30975	4951	29314	191861;191862;191863;191864;191865;191866	259590;259591;259592;259593;259594;259595;259596;259597;259598;259599;259600;259601;259602;259603;259604;259605;259606	259605			17	
LHLQEVQLMTK	1	Unmodified	1338.733	0.73295662	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.316	55.074	3	0.013698	47300	160511_QHF_FH_JSI12i_3	36.284	30.442			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30976	1660	29315	191867	259607	259607			1	
LHLQSTDYGNFLANEASPLTVSVIDDR	0	Unmodified	2974.4672	0.46722969	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.55	100.55	3	3.2905E-08	89456	160511_QHF_FH_JSI11i_3	69.782	63.622			1.3004	1.2253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3004	1.2253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57851000	24166000	33684000	0	0	0	0	0	0	57851000	24166000	33684000	0	0	0	30977	1954	29316	191868	259608	259608			1	
LHLQTVPSK	1	Unmodified	1021.592	0.59202969	4050	Q96EL2	MRPS24	28S ribosomal protein S24, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	25.636	25.249	3	0.00050026	20715	160511_QHF_FH_JSI12i_3	56.432	41.281			1.8261	1.9259	64.06	6	2	Median	1.2425	1.0504	NaN	1	0	Median	2.0033	2.4448	NaN	1	0	Median	1.6646	1.5675	87.584	3	2	Median	2.3177	2.3663	NaN	1	0	Median	675160000	290620000	384540000	49653000	20817000	28836000	54670000	22131000	32539000	321170000	142460000	178700000	249670000	105210000	144460000	30978	4050	29317	191869;191870;191871;191872;191873;191874;191875	259609;259610;259611;259612;259613	259613			5	
LHLSGIDANPNALFPPVEFPAPR	0	Unmodified	2471.2961	0.29612903	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.08		11	7						1	5	4	4	6	100.53	99.989	2;3;4	0	90080	160511_QHF_FH_JSI11i_3	493.88	452.26			1.0361	1.0586	20.812	19	4	Median	1.4879	1.2367	7.0944	5	1	Median	1.0063	1.2205	19.1	4	1	Median	0.96533	1.0366	15.432	4	1	Linear	0.9143	0.95984	20.53	6	1	Median	20675000000	9298400000	11377000000	2107900000	835990000	1271900000	3546700000	1615000000	1931700000	6867000000	3102100000	3764900000	8153300000	3745300000	4408000000	30979	1650	29318	191876;191877;191878;191879;191880;191881;191882;191883;191884;191885;191886;191887;191888;191889;191890;191891;191892;191893;191894	259614;259615;259616;259617;259618;259619;259620;259621;259622;259623;259624;259625;259626	259615			13	
LHLSIVPK	1	Unmodified	905.56984	0.56983769	3707	Q8TCG2	PI4K2B	Phosphatidylinositol 4-kinase type 2-beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			3							1			2	45.796	44.872	3	0.0016602	37960	160511_QHF_FH_JSI12i_3	68.915	50.184			1.8067	1.6638	149.93	2	2	Median	5.8225	4.8033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56061	0.57633	NaN	1	1	Median	38135000	14580000	23554000	21282000	3232300	18050000	0	0	0	0	0	0	16853000	11348000	5504900	30980	3707	29319	191895;191896;191897	259627;259628;259629	259628			3	
LHLSSPDNFR	0	Unmodified	1184.5938	0.5938206	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	38.06	37.509	3	0.00090104	31833	160511_QHF_FH_JSI12i_3	56.013	38.988			1.2366	1.1894	16.427	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2366	1.4556	NaN	1	0	Median	1.4761	1.3353	NaN	1	0	Median	1.0543	1.0595	NaN	1	0	Median	109610000	48555000	61056000	0	0	0	16804000	5980300	10824000	40344000	17994000	22350000	52463000	24581000	27881000	30981	5420	29320	191898;191899;191900	259630;259631	259631			2	
LHLVALVGTQGR	0	Unmodified	1262.7459	0.74590457	2268	Q08345	DDR1	Epithelial discoidin domain-containing receptor 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			62.095	53.731	3	0.039991	29591	160513_QHF_FH_JSI10Kac_6	24.229	18.363			0.83412	0.97725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83412	0.97725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45705000	24148000	21557000	0	0	0	45705000	24148000	21557000	0	0	0	0	0	0	30982	2268	29321	191901	259632	259632			0	
LHLVDLAGSER	0	Unmodified	1208.6513	0.65133548	662;5617	Q9Y496;O95239	KIF3A;KIF4A	Kinesin-like protein KIF3A;Chromosome-associated kinesin KIF4A	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			4								1	2	1	49.218	48.766	2;3	0.00047786	43034	160511_QHF_FH_JSI11i_3	59.265	0			0.83582	0.8476	15.656	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89117	1.0294	NaN	1	0	Median	0.86697	0.80252	16.232	2	0	Median	0.7769	0.79814	NaN	1	0	Median	344520000	184790000	159730000	0	0	0	41696000	19933000	21763000	237370000	127250000	110130000	65450000	37616000	27834000	30983	5617;662	29322	191902;191903;191904;191905	259633;259634;259635	259633			3	
LHLVESLLSR	0	Unmodified	1165.6819	0.68190733	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			66.226	64.731	2;3	0.00010546	54171	160511_QHF_FH_JSI10i_3	60.064	55.271			0.86061	0.8949	10.773	4	0	Median	1.0566	0.88023	17.956	2	0	Median	0.78387	0.8949	4.7972	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96814000	52721000	44093000	51178000	26696000	24482000	45636000	26026000	19611000	0	0	0	0	0	0	30984	2997	29323	191906;191907;191908;191909	259636;259637;259638;259639;259640	259637			5	
LHMLQISYFR	0	Oxidation (M)	1322.6805	0.68052712	5443	Q9UNN8	PROCR	Endothelial protein C receptor	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	64.338	55.131	3	0.00041925	30102	160513_QHF_FH_JSI11Kac_6	75.294	65.607			0.60939	0.68826	30.756	4	0	Median	1.0081	0.87838	NaN	1	0	Median	0.57006	0.67355	NaN	1	0	Median	0.43418	0.42244	NaN	1	0	Median	0.65144	0.70329	NaN	1	0	Median	99146000	59288000	39858000	27998000	11095000	16903000	34621000	23997000	10624000	11768000	8793400	2974600	24759000	15403000	9356400	30985	5443	29324	191910;191911;191912;191913	259641;259642	259641		2661	1	
LHMLQISYFR	0	Unmodified	1306.6856	0.6856125	5443	Q9UNN8	PROCR	Endothelial protein C receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	75.589	67.122	2;3	1.4556E-12	37031	160513_QHF_FH_JSI10Kac_6	126.07	113.11			1.0231	1.025	7.6897	8	1	Median	1.2067	1.0135	0.068924	2	0	Median	0.87548	1.0393	0.32865	2	1	Median	1.0767	1.0279	0.37369	2	0	Median	0.87589	0.92086	15.142	2	0	Median	1721400000	889410000	831990000	231980000	114540000	117450000	769000000	459130000	309860000	440000000	190730000	249270000	280420000	125010000	155410000	30986	5443	29324	191914;191915;191916;191917;191918;191919;191920;191921	259643;259644;259645;259646;259647;259648;259649;259650;259651;259652;259653;259654	259653			12	
LHMTIFSQSVSPCGK	1	Unmodified	1690.8171	0.81709696	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	65.149	59.552	3	5.8204E-05	51199	160511_QHF_FH_JSI12i_3	101.3	88.203			1.0723	1.0603	15.274	7	3	Median	1.144	0.93028	5.1584	2	1	Median	0.99173	1.1442	10.774	2	1	Median	1.376	1.3525	NaN	1	0	Median	0.97958	1.0029	12.039	2	1	Median	330930000	158170000	172750000	52659000	26372000	26287000	106290000	52979000	53309000	43693000	20703000	22990000	128290000	58119000	70168000	30987	3350	29325	191922;191923;191924;191925;191926;191927;191928	259655;259656;259657;259658;259659;259660	259659			4	
LHMVLRPFLLR	0	Unmodified	1393.838	0.83803082	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			76.15	69.9	4	0.00016836	38035	160513_QHF_FH_JSI10Kac_6	83.862	75.132			0.7102	0.83739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7102	0.83739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246840000	147830000	99012000	0	0	0	246840000	147830000	99012000	0	0	0	0	0	0	30988	403	29326	191929	259661;259662	259661			2	
LHNAANANQK	1	Unmodified	1079.5472	0.54720476	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3		1	5	2	4.2694	1.5708	2;3	0.00059897	2062	160511_QHF_FH_JSI11i_3	72.325	62.931			0.58512	0.58042	75.067	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58512	0.56113	88.926	4	4	Median	0.63811	0.69078	66.541	2	2	Median	137110000	80361000	56750000	0	0	0	0	0	0	101180000	58217000	42959000	35935000	22144000	13791000	30989	488	29327	191930;191931;191932;191933;191934;191935;191936;191937	259663;259664;259665;259666;259667;259668;259669;259670	259665			8	
LHNAIEGGTQLSR	0	Unmodified	1394.7266	0.72662569	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	3	3	23.445	23.434	2;3	0.00022228	19385	160511_QHF_FH_JSI12i_3	62.287	48.608			0.8983	0.87461	9.4443	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92128	0.88613	1.8507	2	0	Median	0.7079	0.73109	11.861	3	2	Plateau	519390000	274560000	244830000	0	0	0	0	0	0	189190000	90958000	98235000	330200000	183600000	146600000	30990	453	29328	191938;191939;191940;191941;191942;191943;191944	259671;259672;259673;259674;259675;259676;259677;259678;259679	259679			9	
LHNELQSGSLR	0	Unmodified	1252.6524	0.65239812	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		2	2								2	2		21.201	20.636	2;3	0.0026828	17222	160511_QHF_FH_JSI11i_3	56.729	36.209			0.66423	0.82676	16.139	3	1	Median	NaN	NaN	NaN	0	0	Median	0.60171	0.74048	15.587	2	1	Median	0.95994	0.90823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	169670000	106680000	62990000	0	0	0	112470000	74837000	37636000	57201000	31848000	25354000	0	0	0	30991	2904	29329	191945;191946;191947;191948	259680;259681;259682;259683	259680			4	
LHNKPTFSQTIALLNIYR	1	Unmodified	2128.1793	0.17930835	956	P0DN76;Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	no	0	0	0	1		By MS/MS		By MS/MS	16	0									3		2		1	79.377	72.398	3;4	0.00016369	39815	160513_QHF_FH_JSI10Kac_6	133.86	114.92			0.38904	0.44933	1.497	2	2	Median	NaN	NaN	NaN	0	0	Median	0.38904	0.44933	1.497	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	377950000	287510000	90444000	0	0	0	366380000	275940000	90444000	0	0	0	11568000	11568000	0	30992	956	29330	191949;191950;191951	259684;259685;259686	259686			3	
LHNLAQFEGGESK	1	Unmodified	1428.6997	0.69974224	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	31.172	31.094	2	0.0054274	26281	160511_QHF_FH_JSI12i_3	53.237	28.856			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30993	5618	29331	191952	259687	259687			1	
LHNMIVDLDNVVK	1	Unmodified	1508.8021	0.80209882	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	74.604	73.763	2;3	2.2194E-05	64724	160511_QHF_FH_JSI11i_2	95.273	88.071			1.1268	1.189	33.331	8	2	Median	1.0727	0.90356	NaN	1	0	Median	1.1601	1.4375	57.806	2	0	Median	1.0627	1.0663	31.847	3	2	Median	1.2172	1.3607	3.6777	2	0	Median	573980000	270670000	303310000	93306000	40086000	53220000	128490000	62617000	65874000	219550000	99172000	120380000	132630000	68798000	63834000	30994	2780	29332	191953;191954;191955;191956;191957;191958;191959;191960;191961	259688;259689;259690;259691;259692;259693;259694;259695;259696;259697;259698;259699;259700;259701	259696			13	
LHNMIVDLDNVVKK	2	Unmodified	1636.8971	0.89706184	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	66.012	65.836	3;4	2.3058E-05	57001	160511_QHF_FH_JSI12i_3	107.37	100.17			0.71535	0.72036	81.631	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91056	0.82367	71.427	2	2	Median	0.59821	0.60454	100.12	3	2	Plateau	276720000	145330000	131390000	0	0	0	0	0	0	67186000	36961000	30226000	209530000	108370000	101160000	30995	2780	29333	191962;191963;191964;191965;191966	259702;259703;259704;259705;259706;259707;259708;259709	259706			8	
LHNNQLISELESSVIK	1	Unmodified	1822.9789	0.97887721	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	86.613	85.826	3	0.055583	75511	160511_QHF_FH_JSI11i_2	18.823	14.602			11.055	11.725	3.5623	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.233	12.024	NaN	1	0	Median	9.9896	11.434	NaN	1	0	Median	112490000	14245000	98240000	0	0	0	0	0	0	64481000	7701400	56779000	48005000	6543500	41461000	30996	2911	29334	191967;191968	259710	259710			1	
LHNQQALSSSIEEGLR	0	Unmodified	1780.9068	0.9067749	2246	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.57	4.69		2	4						1	1		3	3	53.376	51.138	2;3	6.9501E-06	39260	160511_QHF_FH_JSI11i_3	101.39	79.231			1.0995	1.115	13.633	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.248	1.1812	0.4037	2	1	Median	0.92661	0.96657	12.464	2	1	Median	328340000	173350000	154990000	0	0	0	0	0	0	217760000	110360000	107410000	110580000	62996000	47582000	30997	2246	29335	191969;191970;191971;191972;191973;191974;191975	259711;259712;259713;259714;259715;259716;259717;259718;259719;259720	259713			10	
LHNQVNGTEWSWK	1	Unmodified	1597.7637	0.76373948	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	44.949	44.439	2;3	4.866E-07	37731	160511_QHF_FH_JSI12i_3	160.18	144.55			1.1409	1.1549	71.182	4	1	Median	NaN	NaN	NaN	0	0	Median	3.8951	4.5334	NaN	1	1	Median	1.0486	0.99784	NaN	1	0	Median	1.1409	1.1549	4.0051	2	0	Median	1068500000	472880000	595670000	0	0	0	122100000	27191000	94906000	128320000	61492000	66829000	818130000	384200000	433930000	30998	231	29336	191976;191977;191978;191979;191980	259721;259722;259723;259724;259725;259726;259727;259728;259729;259730;259731;259732	259727			12	
LHNSLIGTK	1	Unmodified	981.56073	0.56072956	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		2	10							2	5	3	2	19.914	19.193	2;3	0.00010666	15801	160511_QHF_FH_JSI10i_3	70.056	33.036			0.38259	0.46367	115.74	11	8	Median	2.4179	1.9593	39.066	2	2	Median	0.41946	0.52735	99.235	5	3	Median	0.1728	0.1621	36.445	2	1	Median	0.21865	0.21682	4.82	2	2	Median	1546400000	916950000	629490000	162540000	71544000	90999000	564930000	295620000	269320000	315450000	215620000	99823000	503520000	334170000	169350000	30999	2147	29337	191981;191982;191983;191984;191985;191986;191987;191988;191989;191990;191991;191992	259733;259734;259735;259736;259737;259738;259739;259740;259741;259742;259743	259734			11	
LHNSYTDVMCNPFYNPGDR	0	Oxidation (M)	2314.9736	0.97355061	5390	Q9UL33	TRAPPC2L	Trafficking protein particle complex subunit 2-like protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.712	55.536	3	3.738E-06	28980	160513_QHF_FH_JSI12Kac_6	81.016	75.686			1.2656	1.3122	26.84	4	1	Median	1.5972	1.3681	NaN	1	1	Median	1.0575	1.2585	NaN	1	0	Median	0.89086	0.86201	NaN	1	0	Median	1.5148	1.6281	NaN	1	0	Median	49780000	19575000	30204000	7655400	2120000	5535400	10185000	4298900	5886200	8699900	4558400	4141500	23239000	8597900	14641000	31000	5390	29338	191993;191994;191995;191996	259744;259745;259746;259747;259748	259747		2650	5	
LHNSYTDVMCNPFYNPGDR	0	Unmodified	2298.9786	0.97863599	5390	Q9UL33	TRAPPC2L	Trafficking protein particle complex subunit 2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	75.433	66.963	3	1.3492E-18	36177	160513_QHF_FH_JSI11Kac_6	140.28	137.27			0.90835	0.96636	53.184	4	0	Median	0.48439	0.41816	NaN	1	0	Median	0.81396	0.96453	NaN	1	0	Median	1.0137	0.96819	NaN	1	0	Median	1.3993	1.4904	NaN	1	0	Median	230130000	113860000	116270000	13665000	7238200	6426600	89416000	46926000	42490000	82003000	40704000	41298000	45049000	18991000	26058000	31001	5390	29338	191997;191998;191999;192000	259749;259750;259751;259752;259753;259754	259750			6	
LHPEDFPEEDKK	2	Unmodified	1482.6991	0.69907354	674	O95298	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6								1	3	5	26.201	25.901	3;4	1.2087E-05	21305	160511_QHF_FH_JSI12i_3	108.72	98.664			1.082	1.1633	24.504	9	6	Median	NaN	NaN	NaN	0	0	Median	0.83276	1.0363	NaN	1	1	Median	1.2531	1.1824	38.239	3	1	Median	1.082	1.1633	19.949	5	4	Median	682730000	336650000	346080000	0	0	0	30281000	18093000	12189000	161550000	82842000	78712000	490900000	235720000	255180000	31002	674	29339	192001;192002;192003;192004;192005;192006;192007;192008;192009	259755;259756;259757;259758;259759;259760;259761;259762;259763;259764	259761			9	
LHPELSGPGVAAK	1	Unmodified	1274.6983	0.69828568	3035	Q6DD87	ZNF787	Zinc finger protein 787	yes	yes	0	0	0	0			By MS/MS		2.67	0.471		1	2									3		33.154	33.154	2;3	0.0026656	28747	160511_QHF_FH_JSI11i_3	32.478	19.47			1.0346	0.97068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0346	0.97068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58482000	30232000	28250000	0	0	0	0	0	0	58482000	30232000	28250000	0	0	0	31003	3035	29340	192010;192011;192012	259765;259766;259767	259765			3	
LHPEMSNLDLTK	1	Unmodified	1396.7021	0.70205043	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	49.114	48.131	2	0.00056078	41362	160511_QHF_FH_JSI11i_2	83.869	30.094			0.84674	0.87391	7.743	4	4	Median	1.0449	0.8681	NaN	1	1	Median	0.80414	0.97291	NaN	1	1	Median	0.89161	0.87977	NaN	1	1	Median	0.71728	0.80595	NaN	1	1	Median	177950000	86113000	91838000	35206000	15646000	19560000	49220000	21121000	28099000	64176000	35850000	28325000	29348000	13495000	15853000	31004	1117	29341	192013;192014;192015;192016	259768;259769;259770;259771	259770			4	
LHPESKDDK	2	Unmodified	1067.5247	0.52473799	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							4	2	3	2	4.9036	4.6926	2;3	0.00018852	2376	160511_QHF_FH_JSI12i_3	103.55	64.755			0.75503	0.74514	31.688	10	2	Median	1.3883	1.2282	36.695	3	2	Median	0.55898	0.67668	1.8677	2	0	Median	0.79511	0.74975	17.227	3	0	Median	0.69963	0.70907	3.6399	2	0	Median	1796300000	983780000	812520000	146880000	62699000	84180000	195310000	120110000	75198000	494760000	246850000	247910000	959350000	554120000	405230000	31005	1132	29342	192017;192018;192019;192020;192021;192022;192023;192024;192025;192026;192027	259772;259773;259774;259775;259776;259777;259778;259779;259780;259781;259782;259783;259784;259785	259784			14	
LHPFHVIR	0	Unmodified	1017.5872	0.58721908	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	0	0	By MS/MS				3	0			1							1				36.741	35.284	3	0.022521	28766	160511_QHF_FH_JSI9i_3	35.295	26.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31006	1292	29343	192028	259786	259786			1	
LHPGIIDAIK	1	Unmodified	1075.639	0.63897988	186	O14657	TOR1B	Torsin-1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.119	49.883	3	0.0062103	44129	160511_QHF_FH_JSI11i_3	43.282	16.609			1.0871	1.1086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0871	1.1086	NaN	1	0	Median	16215000	8347600	7867400	0	0	0	0	0	0	0	0	0	16215000	8347600	7867400	31007	186	29344	192029;192030	259787;259788	259787			2	
LHPGLPENR	0	Unmodified	1031.5512	0.55122751	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			21.168	20.348	3	0.021432	17485	160511_QHF_FH_JSI10i_2	23.053	14.095			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31008	3003	29345	192031	259789	259789			1	
LHPHFAK	1	Unmodified	848.46571	0.46570697	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	13.79	13.182	3	0.035996	8473	160511_QHF_FH_JSI12i_3	25.45	17.51			1.6538	1.1066	26.826	3	0	Plateau	1.1968	0.99659	NaN	1	0	Median	0.94039	1.1066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6538	1.6564	NaN	1	0	Median	331420000	149560000	181870000	74026000	34419000	39607000	44352000	21958000	22394000	0	0	0	213050000	93179000	119870000	31009	1785	29346	192032;192033;192034	259790;259791	259791			2	
LHPVILASIVDSYER	0	Unmodified	1710.9305	0.93047046	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.67		1	11						4	7	6	2	1	85.506	82.917	2;3	1.1359E-07	42113	160513_QHF_FH_JSI10Kac_6	113.76	101.61			0.85082	0.99213	63.518	14	7	Median	0.79946	0.67044	78.764	6	2	Median	0.84388	0.99297	48.88	5	2	Median	1.0645	1.0015	25.335	2	2	Median	1.833	1.7525	NaN	1	1	Median	1040800000	546400000	494440000	357950000	196900000	161060000	497290000	266720000	230570000	153120000	70257000	82864000	32465000	12525000	19940000	31010	120	29347	192035;192036;192037;192038;192039;192040;192041;192042;192043;192044;192045;192046;192047;192048;192049;192050	259792;259793;259794;259795;259796;259797;259798;259799;259800;259801;259802;259803;259804;259805;259806;259807;259808;259809;259810;259811;259812;259813	259811			22	
LHPVILASIVDSYERR	0	Unmodified	1867.0316	0.031581485	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			78.852	73.104	4	0.00016643	39958	160513_QHF_FH_JSI10Kac_6	71.344	59.321			1.0643	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0643	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53210000	23827000	29383000	0	0	0	53210000	23827000	29383000	0	0	0	0	0	0	31011	120	29348	192051	259814	259814			1	
LHPVPVPADWMNR	0	Unmodified	1530.7766	0.77655277	2219	Q04721	NOTCH2	Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.966	64.675	3	0.0030314	55862	160511_QHF_FH_JSI12i_3	43.382	38.834			1.0364	1.0472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0364	1.0472	NaN	1	1	Median	55695000	22165000	33530000	0	0	0	0	0	0	0	0	0	55695000	22165000	33530000	31012	2219	29349	192052	259815	259815			1	
LHQEDNDYINASLIK	1	Unmodified	1771.8741	0.87407779	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	53.596	52.649	2;3	0.00011275	45418	160511_QHF_FH_JSI11i_2	118.48	82.972			1.0511	1.0675	9.3007	5	3	Median	NaN	NaN	NaN	0	0	Median	0.85137	1.0483	NaN	1	1	Median	1.1038	1.1074	5.194	2	1	Median	0.98024	1.0667	17.163	2	1	Median	336200000	174500000	161690000	0	0	0	82353000	46330000	36024000	157760000	79273000	78483000	96088000	48902000	47186000	31013	1133	29350	192053;192054;192055;192056;192057	259816;259817;259818;259819;259820	259817			5	
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	Unmodified	3381.587	0.58704403	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	3.97		1	25						3	15	9	2	3	65.578	63.538	4;5	4.0877E-32	53355	160511_QHF_FH_JSI10i_3	129.03	120.85			0.93844	0.82435	27.91	29	7	Median	1.0494	0.86578	28.942	15	3	Median	0.64717	0.72527	28.673	9	3	Median	0.85275	0.80059	0.87748	2	0	Median	0.9824	1.0199	23.06	3	1	Median	3362000000	1706000000	1656000000	1737400000	798360000	939040000	993980000	582360000	411620000	441940000	212660000	229270000	188710000	112630000	76081000	31014	2657	29351	192058;192059;192060;192061;192062;192063;192064;192065;192066;192067;192068;192069;192070;192071;192072;192073;192074;192075;192076;192077;192078;192079;192080;192081;192082;192083;192084;192085;192086	259821;259822;259823;259824;259825;259826;259827;259828;259829;259830;259831;259832;259833;259834;259835;259836;259837;259838;259839;259840;259841;259842;259843;259844;259845;259846;259847;259848;259849;259850;259851;259852;259853;259854;259855;259856;259857;259858;259859;259860;259861;259862;259863;259864;259865;259866;259867	259833			45	
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	Oxidation (M)	3397.582	0.58195865	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			14							8	6			59.361	57.828	4;5	8.6387E-17	47815	160511_QHF_FH_JSI9i_3	86.304	80.401			1.0617	0.95174	18.163	14	1	Median	1.2391	1.0177	12.461	8	1	Median	0.79308	0.89284	22.012	6	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	900730000	438990000	461740000	606440000	259090000	347350000	294290000	179900000	114390000	0	0	0	0	0	0	31015	2657	29351	192087;192088;192089;192090;192091;192092;192093;192094;192095;192096;192097;192098;192099;192100	259868;259869;259870;259871;259872;259873;259874;259875;259876;259877;259878;259879;259880;259881;259882;259883;259884;259885;259886;259887;259888;259889;259890;259891	259888		2081;2082	24	
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	1	2 Oxidation (M)	3413.5769	0.57687327	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	2	0	By MS/MS	By matching			3	0			3							2	1			54.054	52.485	4;5	6.468E-13	43152	160511_QHF_FH_JSI9i_3	77.211	75.121			1.1537	0.93947	12.468	3	0	Median	1.2559	1.0199	11.617	2	0	Median	0.7659	0.86697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126930000	65800000	61130000	103680000	47982000	55697000	23251000	17818000	5432700	0	0	0	0	0	0	31016	2657	29351	192101;192102;192103	259892;259893;259894	259894		2081;2082	3	
LHQLDAEK	1	Unmodified	952.49779	0.49779495	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		10.553	10.189	2	0.011895	7660	160511_QHF_FH_JSI11i_2	53.754	9.9399			0.86784	0.98278	10.135	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74101	0.91481	NaN	1	0	Median	1.0164	1.0558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	124350000	65077000	59269000	0	0	0	47410000	25309000	22101000	76936000	39768000	37168000	0	0	0	31017	1316	29352	192104;192105	259895	259895			1	
LHQLLALTLWK	1	Unmodified	1334.8074	0.8074422	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.71	5.87			5						2	3	3		1	86.937	84.476	2;3	8.9795E-08	42521	160513_QHF_FH_JSI10Kac_6	108.7	102.46			0.41504	0.47011	57.638	6	3	Linear	1.5617	1.3352	44.383	3	3	Median	0.48281	0.56767	4.0505	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78048	0.73072	NaN	1	0	Median	356680000	208970000	147720000	21098000	9030800	12067000	303540000	177510000	126040000	0	0	0	32046000	22429000	9616600	31018	3231	29353	192106;192107;192108;192109;192110;192111;192112	259896;259897;259898;259899;259900;259901;259902;259903;259904;259905;259906;259907	259906			12	
LHQLSGSDQLESTAHSR	0	Unmodified	1864.9028	0.90275216	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.275	23.257	4	0.056868	19191	160511_QHF_FH_JSI12i_3	13.6	6.8716			1.2003	1.2431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2003	1.2431	NaN	1	1	Median	22812000	7109200	15703000	0	0	0	0	0	0	0	0	0	22812000	7109200	15703000	31019	404	29354	192113	259908	259908			1	
LHQMWLSWNQK	1	Unmodified	1469.7238	0.72378892	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.4			17						12	9	8	6	6	65.907	61.084	2;3	3.0752E-15	32840	160513_QHF_FH_JSI11Kac_6	149.23	139.7			1.0349	1.024	21.999	23	7	Median	1.0824	0.92223	20.889	8	1	Median	0.86363	1.0097	23.801	7	2	Median	1.0983	1.0859	23.956	5	3	Median	0.99119	1.0341	9.9079	3	1	Median	9064900000	4006800000	5058100000	1440700000	749950000	690710000	4452400000	1879900000	2572500000	2214800000	898140000	1316600000	957110000	478810000	478300000	31020	434	29355	192114;192115;192116;192117;192118;192119;192120;192121;192122;192123;192124;192125;192126;192127;192128;192129;192130;192131;192132;192133;192134;192135;192136;192137;192138;192139;192140;192141;192142	259909;259910;259911;259912;259913;259914;259915;259916;259917;259918;259919;259920;259921;259922;259923;259924;259925;259926;259927;259928;259929;259930;259931;259932;259933;259934;259935;259936;259937;259938;259939;259940;259941;259942;259943;259944;259945;259946;259947;259948;259949;259950;259951;259952;259953;259954;259955;259956;259957;259958;259959;259960;259961;259962;259963;259964;259965;259966;259967;259968;259969;259970;259971	259926			62	
LHQMWLSWNQK	1	Oxidation (M)	1485.7187	0.71870354	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	61.107	51.828	2;3	7.6646E-10	27505	160513_QHF_FH_JSI9Kac_6	119.53	116.33			0.73813	0.67709	82.956	8	4	Median	0.76947	0.65579	3.2725	2	1	Median	1.4339	1.6736	186.11	2	1	Median	0.62719	0.61243	19.123	2	0	Median	0.71421	0.76977	16.894	2	2	Median	697740000	321980000	375760000	190620000	98197000	92424000	225910000	67621000	158290000	107540000	66014000	41527000	173670000	90148000	83521000	31021	434	29355	192143;192144;192145;192146;192147;192148;192149;192150;192151	259972;259973;259974;259975;259976;259977;259978;259979;259980;259981;259982;259983;259984	259976		167	13	
LHQSFFLYLLPGLSR	0	Unmodified	1789.9879	0.98792576	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	1	2	1	93.143	84.535	2;3	1.0044E-10	47471	160513_QHF_FH_JSI11Kac_6	126.95	104.03			0.93378	0.89164	14.27	6	3	Median	0.93947	0.8019	13.23	2	2	Median	0.70021	0.84021	NaN	1	1	Median	1.0773	1.0071	15.447	2	0	Median	0.89327	0.95756	NaN	1	0	Median	575310000	300980000	274320000	181720000	88212000	93512000	142280000	86112000	56167000	195150000	93427000	101720000	56155000	33232000	22923000	31022	319	29356	192152;192153;192154;192155;192156;192157	259985;259986;259987;259988;259989;259990	259987			6	
LHSEGDQLLAAEHPGR	0	Unmodified	1728.8543	0.8543454	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	32.08	32.002	3;4	0.0071947	26993	160511_QHF_FH_JSI12i_3	39.91	33.181			0.77345	0.79885	30.234	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77345	0.79885	30.234	2	0	Median	74563000	41420000	33143000	0	0	0	0	0	0	0	0	0	74563000	41420000	33143000	31023	416	29357	192158;192159	259991;259992	259991			2	
LHSFESHK	1	Unmodified	983.48248	0.48247924	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	6.3185	6.3837	2;3	0.010858	3916	160511_QHF_FH_JSI12i_3	46.158	31.951			1.4595	1.4969	38.325	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81855	0.76561	NaN	1	0	Median	1.331	1.3516	28	2	1	Median	455130000	205780000	249350000	0	0	0	0	0	0	21818000	15364000	6454000	433310000	190420000	242900000	31024	2283	29358	192160;192161;192162	259993;259994	259994			2	
LHSFLGDDVFLR	0	Unmodified	1417.7354	0.73539946	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.084	77.817	3	0.0045833	67566	160511_QHF_FH_JSI12i_3	49.448	41.038			1.7852	1.942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7852	1.942	NaN	1	1	Median	10801000	3332400	7468600	0	0	0	0	0	0	0	0	0	10801000	3332400	7468600	31025	855	29359	192163	259995	259995			1	
LHSHDIK	1	Unmodified	848.45045	0.45045083	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	5.0329	5.0791	2	0.020108	2597	160511_QHF_FH_JSI12i_3	57.281	40.354			0.88901	0.87345	3.9697	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90403	0.84927	NaN	1	0	Median	0.87424	0.89831	NaN	1	0	Median	303440000	154800000	148640000	0	0	0	0	0	0	95741000	51873000	43869000	207700000	102930000	104770000	31026	4862	29360	192164;192165	259996;259997	259996			2	
LHSIILANPQDNENFIATVR	0	Unmodified	2264.1913	0.1913296	4882	Q9NP66	HMG20A	High mobility group protein 20A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		79.128	78.097	3	1.3697E-05	65506	160511_QHF_FH_JSI10i_3	71.742	57.488			0.7826	0.72189	11.586	4	3	Linear	1.1063	0.93614	NaN	1	1	Median	0.75468	0.87721	5.5472	2	2	Median	0.77383	0.72367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111160000	61750000	49406000	11274000	3251100	8022700	49691000	28943000	20748000	50192000	29556000	20636000	0	0	0	31027	4882	29361	192166;192167;192168;192169	259998;259999;260000;260001	260000			3	
LHSLLGDYYQAIK	1	Unmodified	1519.8035	0.80347903	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.4	0.49		3	2							1	2		2	70.028	69.083	2;3	3.4722E-05	61317	160511_QHF_FH_JSI10i_2	84.169	78.992			0.98086	1.073	20.367	5	2	Median	1.1982	1.0509	NaN	1	1	Median	0.96012	1.1332	7.7131	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0964	1.1766	38.919	2	1	Median	621920000	297610000	324310000	99172000	43416000	55756000	172510000	96348000	76162000	0	0	0	350240000	157840000	192390000	31028	5494	29362	192170;192171;192172;192173;192174	260002;260003;260004;260005;260006;260007;260008;260009;260010	260008			9	
LHSLQLLPIYQTGSLTSDGK	1	Unmodified	2170.1634	0.16338352	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	83.229	83.133	3	1.1052E-06	72128	160511_QHF_FH_JSI12i_3	89.507	84.505			0.89467	0.86797	18.178	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81716	0.76328	NaN	1	0	Median	0.97953	0.98703	NaN	1	0	Median	105640000	50687000	54955000	0	0	0	0	0	0	50634000	26040000	24594000	55008000	24647000	30361000	31029	3935	29363	192175;192176;192177	260011;260012;260013;260014;260015;260016	260015			6	
LHSLVKPSVDYVCQLK	2	Unmodified	1885.0132	0.013154229	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	56.857	56.349	3;4	0.0021105	48236	160511_QHF_FH_JSI12i_3	51.147	35.754			0.77603	0.8385	30.213	4	2	Median	NaN	NaN	NaN	0	0	Median	0.86935	0.99174	NaN	1	0	Median	0.66709	0.63151	NaN	1	1	Median	0.91594	0.92908	38.244	2	1	Median	290400000	145610000	144790000	0	0	0	34764000	15482000	19282000	57111000	35657000	21454000	198520000	94471000	104050000	31030	380	29364	192178;192179;192180;192181	260017;260018;260019;260020	260019			4	
LHSQGVLKNK	2	Acetyl (K)	1164.6615	0.66150624	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		23.647	14.543	3	0.021619	9259	160513_QHF_FH_JSI11Kac_6	40.727	20.966			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31031	4018	29365	192182	260021	260021	3032		1	
LHSVCTLSK	1	Unmodified	1043.5434	0.54336494	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	15.199	15.23	2;3	0.00086947	12489	160511_QHF_FH_JSI11i_3	68.846	49.084			1.3223	1.3343	27.571	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5741	1.4749	46.394	2	2	Median	1.3223	1.3343	5.28	2	0	Median	615900000	275890000	340010000	0	0	0	0	0	0	209980000	98265000	111720000	405920000	177630000	228290000	31032	989	29366	192183;192184;192185;192186	260022;260023;260024;260025;260026	260022			5	
LHSVLFMAR	0	Oxidation (M)	1088.5801	0.5800848	3750	Q8WTW3	COG1	Conserved oligomeric Golgi complex subunit 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				46.044	36.848	3	0.018261	19681	160513_QHF_FH_JSI9Kac_6	38.303	30.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31033	3750	29367	192187	260027	260027		2291	1	
LHSYSSPSTK	1	Unmodified	1105.5404	0.54038805	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	8.1357	8.2334	2	0.012464	5651	160511_QHF_FH_JSI12i_3	45.161	18.031			0.87181	0.88143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87181	0.88143	NaN	1	0	Median	85037000	33075000	51962000	0	0	0	0	0	0	0	0	0	85037000	33075000	51962000	31034	4254	29368	192188	260028;260029;260030	260030			3	
LHTDDELNWLDHGR	0	Unmodified	1719.7965	0.79649617	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	55.258	55.016	3	1.1647E-05	47242	160511_QHF_FH_JSI12i_3	78.69	69.758			0.75258	0.73347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75258	0.73347	NaN	1	0	Median	45187000	25135000	20052000	0	0	0	0	0	0	0	0	0	45187000	25135000	20052000	31035	5616	29369	192189;192190	260031;260032	260032			2	
LHTFESHK	1	Unmodified	997.49813	0.49812931	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	7.8639	7.6499	2;3	0.00096096	4978	160511_QHF_FH_JSI12i_3	69.812	53.609			0.84378	0.88891	23.131	7	1	Median	1.5806	1.2798	NaN	1	0	Median	0.68034	0.7769	29.349	2	1	Median	0.79002	0.7494	10.133	2	0	Median	0.90181	0.912	3.6265	2	0	Median	1617700000	927290000	690440000	25487000	9062800	16424000	169550000	103400000	66154000	583250000	336550000	246700000	839440000	478280000	361160000	31036	2741	29370	192191;192192;192193;192194;192195;192196;192197;192198;192199	260033;260034;260035;260036;260037;260038;260039;260040;260041;260042;260043;260044;260045	260043			13	
LHTLEEEK	1	Unmodified	997.50803	0.50802529	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		6						2		1	2	2	3	13.256	11.209	2;3	0.0055661	9008	160511_QHF_FH_JSI11i_2	65.246	43.946			1.1115	1.1688	23.729	6	1	Median	1.8223	1.5603	NaN	1	1	Median	1.223	1.4915	NaN	1	0	Median	0.97572	0.97757	5.0446	2	0	Median	1.0021	1.1188	26.403	2	0	Median	589490000	296940000	292550000	65793000	25896000	39898000	126010000	84593000	41416000	180550000	82095000	98455000	217140000	104360000	112780000	31037	5479	29371	192200;192201;192202;192203;192204;192205;192206;192207	260046;260047;260048;260049;260050;260051;260052	260049			7	
LHTLIPCK	1	Unmodified	980.54772	0.54772204	3416	Q8IWA4	MFN1	Mitofusin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			24.583	23.295	3	0.052251	18789	160511_QHF_FH_JSI9i_3	24.923	1.4942			5.3621	5.1684	46.392	2	2	Median	8.8267	7.175	NaN	1	1	Median	3.2575	3.723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105650000	10241000	95405000	56857000	7841800	49016000	48789000	2399200	46389000	0	0	0	0	0	0	31038	3416	29372	192208;192209	260053;260054	260054			2	
LHTNFHIPK	1	Unmodified	1105.6033	0.60326308	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			36.34	34.9	3	0.024341	29050	160511_QHF_FH_JSI10i_3	34.563	20.793			0.50898	0.58528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50898	0.58528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50886000	30419000	20467000	0	0	0	50886000	30419000	20467000	0	0	0	0	0	0	31039	5330	29373	192210	260055	260055			1	
LHTVQPK	1	Unmodified	821.47594	0.4759373	1842	P55036;A2A3N6	PSMD4;PIPSL	26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	7.7065	7.4313	2	0.016664	5288	160511_QHF_FH_JSI9i_2	62.714	19.714			0.94381	0.96387	7.317	6	0	Median	1.0828	0.91929	NaN	1	0	Median	0.84052	1.0447	NaN	1	0	Median	0.91019	0.90111	2.9648	2	0	Median	0.96428	1.0255	2.2124	2	0	Median	1037900000	533530000	504340000	140660000	70366000	70292000	176410000	93018000	83387000	406190000	211900000	194290000	314620000	158250000	156370000	31040	1842	29374	192211;192212;192213;192214;192215;192216	260056;260057;260058;260059;260060;260061;260062;260063;260064;260065	260059			10	
LHTYLAGEAPTLADLAAVTALLLPFR	0	Unmodified	2736.5214	0.52143752	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	2	1	102.33	97.328	2;3	2.2544E-129	56287	160513_QHF_FH_JSI10Kac_6	304.13	279.34			1.0174	1.0611	22.069	6	2	Median	1.27	1.0867	NaN	1	0	Median	1.0831	1.2562	27.243	2	0	Median	0.97556	0.93651	26.3	2	1	Median	0.87684	0.95374	NaN	1	1	Median	1695100000	850290000	844840000	609020000	274330000	334700000	998820000	532330000	466490000	78495000	37644000	40852000	8789700	5989300	2800400	31041	1283	29375	192217;192218;192219;192220;192221;192222	260066;260067;260068;260069;260070;260071;260072	260072			7	
LHVDPENFR	0	Unmodified	1125.5567	0.55670682	72	CON__Q3SX09;P68871;P02042	HBB;HBD	Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	38.629	38.109	2;3	7.8677E-05	33350	160511_QHF_FH_JSI11i_3	69.812	60.418		+	0.90501	0.8574	29.548	8	0	Median	0.89038	0.77078	NaN	1	0	Median	0.63364	0.76868	NaN	1	0	Median	1.1246	0.97539	16.999	3	0	Plateau	1.5805	1.6462	33.543	3	0	Plateau	2546800000	1212100000	1334700000	185260000	86720000	98539000	242850000	150650000	92204000	1049600000	496070000	553490000	1069100000	478680000	590430000	31042	72	29376	192223;192224;192225;192226;192227;192228;192229;192230	260073;260074;260075;260076;260077;260078;260079;260080;260081;260082;260083;260084;260085	260074			13	
LHVENEDK	1	Unmodified	982.47197	0.47197413	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	8.4617	8.051	2	0.014795	5783	160511_QHF_FH_JSI12i_2	51.059	6.6645			0.8632	0.90826	4.7865	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94033	0.93952	NaN	1	0	Median	0.7924	0.87803	NaN	1	0	Median	194210000	104890000	89321000	0	0	0	0	0	0	120010000	63409000	56600000	74206000	41485000	32721000	31043	1620	29377	192231;192232	260086	260086			1	
LHVENEDKK	2	Unmodified	1110.5669	0.56693715	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.78	0.416		2	7							1		4	4	6.3365	6.308	2;3;4	0.00012627	3800	160511_QHF_FH_JSI12i_3	79.148	46.828			0.93594	0.85956	51.331	9	5	Median	1.0121	0.85754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99412	0.92576	78.426	4	2	Median	0.88756	0.89147	21.058	4	3	Median	1416400000	691410000	725000000	71193000	46123000	25070000	0	0	0	468320000	252850000	215470000	876900000	392440000	484460000	31044	1620	29378	192233;192234;192235;192236;192237;192238;192239;192240;192241	260087;260088;260089;260090;260091;260092;260093;260094;260095;260096;260097	260094			11	
LHVEVMR	0	Unmodified	882.47456	0.47455709	4659	Q9H1H9;Q9NQT8	KIF13A;KIF13B	Kinesin-like protein KIF13A;Kinesin-like protein KIF13B	yes	no	0	0	0	0		By MS/MS		By matching	2.5	0.5		1	1								1		1	26.932	26.456	3	0.008174	23359	160511_QHF_FH_JSI10i_2	50.025	30.665			1.1952	1.3106	28.7	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89881	1.0698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5893	1.6054	NaN	1	0	Median	51789000	24538000	27251000	0	0	0	15344000	8073400	7270500	0	0	0	36445000	16464000	19981000	31045	4659	29379	192242;192243	260098;260099	260098			2	
LHVFDANTLTWSQPETLGNPPSPR	0	Unmodified	2676.3296	0.329614	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.747	84.661	3	1.9431E-06	75621	160511_QHF_FH_JSI11i_3	64.954	56.865			0.85833	0.83152	8.7372	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94229	0.88452	NaN	1	0	Median	0.78185	0.78171	NaN	1	1	Median	65501000	35400000	30102000	0	0	0	0	0	0	35740000	19172000	16567000	29762000	16227000	13534000	31046	3289	29380	192244;192245	260100;260101	260100			2	
LHVGNISPTCTNK	1	Unmodified	1439.7191	0.71909747	4498	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	30.536	29.737	2;3	2.2947E-05	24852	160511_QHF_FH_JSI12i_3	78.705	74.735			0.97033	0.90921	63.062	6	1	Median	1.1297	0.94755	NaN	1	0	Median	1.3003	1.5491	124.32	2	1	Median	0.82832	0.76433	NaN	1	0	Median	0.97033	0.95998	13.527	2	0	Median	517650000	234700000	282950000	33908000	14011000	19897000	150800000	62289000	88513000	135970000	64454000	71520000	196960000	93948000	103020000	31047	4498	29381	192246;192247;192248;192249;192250;192251;192252	260102;260103;260104;260105;260106;260107;260108;260109;260110	260108			9	
LHVGYLQPLVAVQVSFAPNNTGK	1	Unmodified	2451.3274	0.32742915	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	92.508	89.659	3	3.774E-05	85087	160511_QHF_FH_JSI12i_3	53.779	39.618			0.5628	0.64109	10.278	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57537	0.68941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5505	0.59615	NaN	1	1	Median	103250000	50469000	52781000	0	0	0	92081000	42581000	49500000	0	0	0	11169000	7888300	3280300	31048	1829	29382	192253;192254	260111;260112	260111			2	
LHVIFGGTK	1	Unmodified	970.56	0.56000128	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	4	4	3	4	42.705	37.978	2;3	0.00018151	31784	160511_QHF_FH_JSI12i_3	74.464	63.3			1.0056	1.0162	15.071	15	0	Median	1.192	0.99246	6.5728	4	0	Median	0.90414	1.0888	13.396	4	0	Median	0.92384	0.85616	25.381	3	0	Median	1.0168	1.0491	6.4048	4	0	Median	1192100000	614760000	577330000	326730000	157610000	169130000	301140000	172700000	128440000	226560000	113890000	112670000	337660000	170570000	167100000	31049	4868	29383	192255;192256;192257;192258;192259;192260;192261;192262;192263;192264;192265;192266;192267;192268;192269	260113;260114;260115;260116;260117;260118;260119;260120;260121;260122;260123;260124;260125;260126;260127;260128	260124			16	
LHVLLFK	1	Unmodified	868.55346	0.55345934	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	2	3	2	3	64.382	59.148	3	0.0022449	32274	160513_QHF_FH_JSI10Kac_6	77.748	73.731			1.0734	0.89911	28.907	9	1	Median	1.1663	0.96836	10.492	2	0	Median	0.65304	0.77037	31.979	3	1	Median	1.0966	1.0421	22.442	2	0	Median	1.1363	1.1767	8.5885	2	0	Median	1920900000	1007700000	913210000	315920000	123330000	192590000	475970000	281340000	194630000	663990000	382760000	281230000	465000000	220240000	244760000	31050	3937	29384	192270;192271;192272;192273;192274;192275;192276;192277;192278;192279	260129;260130;260131;260132;260133;260134;260135;260136;260137;260138;260139;260140;260141;260142;260143;260144;260145;260146;260147;260148;260149;260150;260151;260152;260153;260154;260155;260156;260157;260158;260159;260160;260161	260158			33	
LHVQWAPTAAGPGGGAER	0	Unmodified	1773.8911	0.89106526	2798	Q2T9J0	TYSND1	Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			49.929	48.324	3	6.5569E-05	39647	160511_QHF_FH_JSI9i_3	65.949	61.558			1.3006	1.0728	NaN	1	0	Median	1.3006	1.0728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32217000	15119000	17098000	32217000	15119000	17098000	0	0	0	0	0	0	0	0	0	31051	2798	29385	192280;192281	260162;260163	260163			2	
LHVSITNAK	1	Unmodified	981.56073	0.56072956	1518	P41247	PNPLA4	Patatin-like phospholipase domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.894	23.876	3	0.046369	19894	160511_QHF_FH_JSI12i_3	26.442	20.138			2.3344	2.3512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3344	2.3512	NaN	1	1	Median	51673000	19619000	32054000	0	0	0	0	0	0	0	0	0	51673000	19619000	32054000	31052	1518	29386	192282	260164	260164			1	
LHVSTINLQK	1	Unmodified	1151.6663	0.66625727	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	39.618	38.818	3	4.1437E-05	33997	160511_QHF_FH_JSI11i_3	82.645	77.949			0.68374	0.73181	66.913	4	0	Median	0.27379	0.22792	NaN	1	0	Median	0.50285	0.57532	NaN	1	0	Median	1.0272	0.95347	NaN	1	0	Median	0.92972	0.93087	NaN	1	0	Median	384150000	218290000	165860000	74103000	59261000	14841000	60606000	36361000	24245000	89596000	45528000	44068000	159840000	77138000	82704000	31053	1535	29387	192283;192284;192285;192286	260165;260166;260167	260165			3	
LHVTALDYLAPYAK	1	Unmodified	1573.8504	0.85042922	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	3	2	81.731	81.148	2;3	6.6149E-05	72142	160511_QHF_FH_JSI11i_3	82.85	77.136			0.92258	0.91471	71.831	9	3	Median	0.68417	0.59388	62.654	2	1	Median	1.2532	1.5607	74.232	2	1	Median	0.97388	0.89252	82.432	3	1	Plateau	1.0691	1.1576	33.306	2	0	Median	413660000	235230000	178430000	58799000	31331000	27468000	56937000	28319000	28618000	208910000	130530000	78378000	89016000	45055000	43961000	31054	5484	29388	192287;192288;192289;192290;192291;192292;192293;192294;192295	260168;260169;260170;260171;260172;260173;260174;260175;260176;260177;260178;260179;260180;260181;260182;260183	260168			16	
LHYAFQTEGK	1	Unmodified	1192.5877	0.58767259	2669;1755	Q15418;P51812;Q15349;Q9UK32	RPS6KA1;RPS6KA3;RPS6KA2;RPS6KA6	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								1	3	3	27.969	27.854	2;3	0.001258	23352	160511_QHF_FH_JSI12i_3	63.216	54.522			1.094	1.1015	7.2159	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.094	1.0575	4.5063	2	0	Median	1.1283	1.1643	6.5878	2	1	Median	773210000	355690000	417530000	0	0	0	0	0	0	136130000	64331000	71794000	637090000	291350000	345730000	31055	2669;1755	29389	192296;192297;192298;192299;192300;192301;192302	260184;260185;260186;260187;260188;260189;260190	260189			7	
LHYCVSCAIHSK	1	Unmodified	1473.6857	0.68568885	2027	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	3	3	2	4	33.088	27.617	3;4	0.00014193	22463	160511_QHF_FH_JSI9i_3	81.565	73.052			0.82374	0.83586	59.06	12	4	Median	0.59391	0.48872	13.425	3	1	Plateau	0.90265	1.0352	39.977	3	0	Plateau	0.75523	0.72417	65.463	2	1	Median	1.0491	1.0887	62.668	4	2	Median	351410000	190740000	160660000	52796000	27655000	25141000	73071000	35107000	37964000	43813000	22839000	20974000	181730000	105140000	76584000	31056	2027	29390	192303;192304;192305;192306;192307;192308;192309;192310;192311;192312;192313;192314	260191;260192;260193;260194;260195;260196;260197;260198;260199	260193			8	
LHYGLPVVVK	1	Unmodified	1123.6754	0.67536539	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	56.973	56.18	3	0.0002196	48725	160511_QHF_FH_JSI11i_2	56.258	48.333			0.97809	0.99551	24.999	7	0	Median	0.97809	0.83526	NaN	1	0	Median	0.65746	0.79841	25.594	2	0	Median	1.1311	1.1101	15.403	2	0	Median	1.1123	1.2143	23.44	2	0	Median	277480000	136580000	140910000	28804000	15121000	13683000	56379000	32512000	23867000	107470000	45767000	61700000	84833000	43176000	41657000	31057	1422	29391	192315;192316;192317;192318;192319;192320;192321	260200;260201;260202;260203;260204;260205;260206;260207;260208;260209;260210;260211;260212;260213;260214	260210			15	
LHYIMGDYAEALSNQQK	1	Unmodified	1979.9411	0.9411115	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	64.531	64.338	2;3	5.6921E-12	55494	160511_QHF_FH_JSI12i_3	153.09	141.83			1.1458	0.98216	10.214	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1895	1.0908	NaN	1	0	Median	1.0243	1.044	13.993	2	0	Median	493720000	271470000	222250000	0	0	0	0	0	0	152210000	71027000	81183000	341510000	200450000	141070000	31058	485	29392	192322;192323;192324	260215;260216;260217;260218	260218			4	
LHYMFSALR	0	Unmodified	1136.5801	0.5800848	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.337	53.007	3	4.5948E-06	29015	160513_QHF_FH_JSI10Kac_6	109.11	72.728			0.81921	0.97168	11.155	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81281	0.97168	NaN	1	0	Median	1.1118	1.0888	NaN	1	0	Median	1.1163	1.2145	NaN	1	0	Median	109570000	59674000	49896000	0	0	0	73726000	40407000	33319000	20890000	10212000	10678000	14953000	9054700	5898300	31059	2793	29393	192325;192326;192327;192328	260219;260220;260221;260222;260223;260224	260223			6	
LHYMFSALR	0	Oxidation (M)	1152.575	0.57499942	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	53.293	43.776	3	0.0017375	22885	160513_QHF_FH_JSI12Kac_6	58.981	43.837			1.0891	1.0486	7.8581	2	0	Median	1.159	0.99194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0234	1.1085	NaN	1	0	Median	12614000	6045200	6568700	7484500	3369400	4115100	0	0	0	0	0	0	5129400	2675800	2453600	31060	2793	29393	192329;192330	260225;260226;260227	260227		2142	2	
LHYNEGLNIK	1	Unmodified	1199.6299	0.62987176	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	4	3	35.984	35.434	2;3	2.0868E-05	29911	160511_QHF_FH_JSI12i_3	85.731	65.969			0.80383	0.80701	21.109	10	2	Median	0.85471	0.7292	9.6312	2	0	Median	0.68275	0.83433	NaN	1	0	Median	1.2425	1.0433	22.938	4	2	Linear	0.69626	0.71063	13.222	3	0	Median	2239100000	1149300000	1089900000	484580000	277570000	207010000	202470000	121960000	80517000	980840000	457240000	523600000	571210000	292490000	278730000	31061	1516	29394	192331;192332;192333;192334;192335;192336;192337;192338;192339;192340	260228;260229;260230;260231;260232;260233;260234;260235;260236;260237;260238	260238			11	
LHYPTGEVPFPR	0	Unmodified	1411.7248	0.72483478	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			57.168	56.27	3	0.013145	49801	160511_QHF_FH_JSI10i_2	23.514	18.199			0.8017	0.98961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8017	0.98961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28714000	15788000	12926000	0	0	0	28714000	15788000	12926000	0	0	0	0	0	0	31062	3000	29395	192341	260239	260239			1	
LIAAQTGTR	0	Unmodified	929.52943	0.52942943	4569	Q9BZL1	UBL5	Ubiquitin-like protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.06		5	1					3		1	3	2	3	14.954	11.543	2	0.00057148	9999	160511_QHF_FH_JSI11i_2	78.192	60.425			0.89219	0.90063	13.86	9	2	Median	0.95826	0.81417	NaN	1	0	Median	0.79716	0.90063	24.037	3	2	Median	0.91164	0.90606	2.2297	2	0	Median	0.80035	0.84062	12.197	3	0	Plateau	1279900000	729940000	549910000	212020000	122890000	89139000	379940000	221940000	158010000	269570000	147300000	122270000	418310000	237810000	180500000	31063	4569	29396	192342;192343;192344;192345;192346;192347;192348;192349;192350	260240;260241;260242;260243;260244;260245;260246;260247;260248	260243			9	
LIADLGSTSITNLGFR	0	Unmodified	1676.9097	0.90973501	3833	Q92520	FAM3C	Protein FAM3C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.602	89.731	3	0.037813	77382	160511_QHF_FH_JSI12i_2	24.467	18.572			1.1609	1.3135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1609	1.3135	NaN	1	0	Median	36173000	22697000	13476000	0	0	0	0	0	0	0	0	0	36173000	22697000	13476000	31064	3833	29397	192351	260249;260250	260249			2	
LIADLQPNTEYSFVLMNR	0	Unmodified	2123.0721	0.072125671	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	95.773	95.415	2;3	0.0001033	82163	160511_QHF_FH_JSI12i_2	66.262	43.345			0.94527	1.0406	16.562	5	3	Median	NaN	NaN	NaN	0	0	Median	0.72657	0.88005	NaN	1	1	Median	0.81544	0.81337	20.999	3	2	Plateau	0.94527	1.0729	NaN	1	0	Median	95744000	52987000	42757000	0	0	0	8035400	5267600	2767800	77228000	42208000	35020000	10480000	5511600	4968800	31065	971	29398	192352;192353;192354;192355;192356;192357;192358	260251;260252;260253;260254;260255;260256;260257;260258;260259;260260;260261	260251			11	
LIADVAPSAIR	0	Unmodified	1124.6554	0.65535823	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.2	4	2	2				3	2		3	2	3	5	55.643	50.949	2	5.4892E-05	41773	160511_QHF_FH_JSI9i_3	94.692	44.085			1.0381	1.0615	27.81	13	1	Median	1.5075	1.2478	26.037	3	0	Median	0.83107	0.99793	44.528	2	0	Median	1.2529	1.1969	38.171	3	1	Plateau	1.0159	1.0615	17.073	5	0	Median	1822900000	862750000	960190000	613950000	248670000	365280000	282260000	152100000	130160000	345120000	161880000	183240000	581610000	300100000	281510000	31066	1488	29399	192359;192360;192361;192362;192363;192364;192365;192366;192367;192368;192369;192370;192371	260262;260263;260264;260265;260266;260267;260268;260269	260266			8	
LIADVAPSAIRENDIK	1	Unmodified	1723.9468	0.9468488	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							3	2	4	4	55.33	54.587	2;3	4.2405E-06	48399	160511_QHF_FH_JSI11i_3	138.45	114.46			1.0719	1.0689	15.068	13	1	Median	1.1708	0.97352	22.299	3	1	Plateau	0.77517	0.95328	9.5823	2	0	Median	1.1418	1.1145	11.172	4	0	Median	0.91865	0.99069	12.363	4	0	Median	7659500000	3976100000	3683300000	708160000	262970000	445190000	900300000	545450000	354840000	3131100000	1448000000	1683100000	2919900000	1719700000	1200200000	31067	1488	29400	192372;192373;192374;192375;192376;192377;192378;192379;192380;192381;192382;192383;192384	260270;260271;260272;260273;260274;260275;260276;260277;260278;260279;260280;260281;260282;260283;260284;260285;260286;260287;260288;260289;260290;260291;260292;260293;260294;260295;260296;260297;260298;260299	260274			30	
LIAEEGVDSLNVK	1	Unmodified	1385.7402	0.74021007	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3.8	5.11	3	1					1			1	3		1	57.306	54.539	2	1.6463E-05	49269	160511_QHF_FH_JSI10i_1	155.53	100.47			0.97855	1.0729	13.394	4	1	Median	1.0206	0.83818	NaN	1	0	Median	0.9499	1.1103	1.3886	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0001	1.047	NaN	1	0	Median	723520000	398640000	324880000	220170000	107210000	112950000	262240000	157570000	104670000	0	0	0	241110000	133850000	107260000	31068	655	29401	192385;192386;192387;192388;192389	260300;260301;260302;260303;260304;260305	260302			6	
LIAEGPGETVLVAEEEAAR	0	Unmodified	1953.0055	0.0054858935	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								2		2	1	76.682	75.876	2;3	1.2611E-07	66751	160511_QHF_FH_JSI11i_2	132.86	97.851			1.2097	1.1694	16.234	5	1	Median	1.466	1.2524	9.7035	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1662	1.1798	7.5611	2	0	Median	0.81674	0.87456	NaN	1	1	Median	240240000	103220000	137020000	115820000	43555000	72268000	0	0	0	108190000	52916000	55278000	16220000	6744400	9475200	31069	4811	29402	192390;192391;192392;192393;192394	260306;260307;260308;260309;260310	260310			5	
LIAEHGVAK	1	Unmodified	936.53927	0.53926584	5768				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.68	0.466		14	30							15	13	11	5	14.524	13.921	2;3	0.00093888	10936	160511_QHF_FH_JSI10i_3	57.96	39.229	+		0.66247	0.66509	151.72	43	2	Median	1.6468	1.3215	139.56	15	0	Median	0.70446	0.82821	168.42	13	1	Median	0.30837	0.29243	183.33	10	1	Median	0.66247	0.66509	105.76	5	0	Median	19305000000	9915000000	9390100000	6657600000	2742400000	3915200000	4932100000	2792000000	2140100000	5690100000	3232700000	2457400000	2025400000	1147900000	877440000	31070	5768	29403	192395;192396;192397;192398;192399;192400;192401;192402;192403;192404;192405;192406;192407;192408;192409;192410;192411;192412;192413;192414;192415;192416;192417;192418;192419;192420;192421;192422;192423;192424;192425;192426;192427;192428;192429;192430;192431;192432;192433;192434;192435;192436;192437;192438	260311;260312;260313;260314;260315;260316;260317;260318;260319;260320;260321;260322;260323;260324;260325;260326;260327;260328;260329;260330;260331;260332;260333;260334;260335;260336;260337;260338;260339;260340;260341;260342;260343	260320			29	
LIAEQPPHLTPGIR	0	Unmodified	1540.8726	0.87256165	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	51.342	50.542	2;3	1.2395E-12	44571	160511_QHF_FH_JSI11i_3	116.77	68.828			0.85887	0.86971	25.6	4	0	Median	1.2714	1.0884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83358	0.84016	NaN	1	0	Median	0.68753	0.72881	29.885	2	0	Median	788910000	421940000	366970000	177120000	83768000	93352000	0	0	0	122880000	77411000	45467000	488920000	260760000	228150000	31071	2083	29404	192439;192440;192441;192442;192443;192444;192445;192446;192447	260344;260345;260346;260347;260348;260349;260350;260351;260352;260353	260344			9	
LIAEQTLQENLIEK	1	Unmodified	1640.8985	0.89850163	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.962	67.653	2	5.2763E-05	61254	160511_QHF_FH_JSI10i_1	144.1	85.733			0.88318	1.0369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88318	1.0369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28047000	16927000	11121000	0	0	0	28047000	16927000	11121000	0	0	0	0	0	0	31072	2977	29405	192448	260354	260354			1	
LIAFWLER	0	Unmodified	1046.5913	0.59130141	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.498	76.249	2	0.00015795	43257	160513_QHF_FH_JSI10Kac_6	120.65	92.427			1.0468	1.1715	22.058	4	0	Median	1.7351	1.4997	NaN	1	0	Median	1.0584	1.2455	NaN	1	0	Median	0.91632	0.88649	NaN	1	0	Median	1.0353	1.1019	NaN	1	0	Median	381450000	171210000	210240000	68408000	28827000	39581000	199840000	89407000	110430000	67466000	33429000	34037000	45736000	19549000	26187000	31073	3668	29406	192449;192450;192451;192452	260355;260356;260357;260358;260359	260358			5	
LIAGNKPVSFLTAQQLQQLQQQGQATQVR	1	Acetyl (K)	3234.7473	0.74730814	3107	Q6P4R8	NFRKB	Nuclear factor related to kappa-B-binding protein	yes	yes	1	0	0	1	By MS/MS		By MS/MS		16	0									4	2		2		87.242	78.268	3;4	2.1579E-117	43508	160513_QHF_FH_JSI11Kac_6	242.94	236.24			1.2297	1.0954	24.866	4	0	Median	1.6793	1.419	31.02	2	0	Median	NaN	NaN	NaN	0	0	Median	1.111	1.0525	0.056029	2	0	Median	NaN	NaN	NaN	0	0	Median	2085600000	841760000	1243900000	429750000	155140000	274600000	0	0	0	1655900000	686620000	969270000	0	0	0	31074	3107	29407	192453;192454;192455;192456	260360;260361;260362;260363;260364;260365	260362	2772		6	
LIAHAGSLLNLAK	1	Unmodified	1319.7925	0.79252041	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							2	2	4	4	59.981	59.384	2;3	1.1943E-06	50965	160511_QHF_FH_JSI12i_3	126.12	117.37			1.1076	1.1593	67.54	12	11	Median	1.0413	0.83742	103.26	2	2	Median	1.1597	1.3625	41.085	2	1	Median	0.95503	0.90323	74.073	4	4	Median	0.86678	0.87368	78.293	4	4	Median	2506800000	1290900000	1215900000	320410000	160470000	159930000	327010000	200900000	126110000	802830000	362230000	440600000	1056500000	567260000	489260000	31075	5544	29408	192457;192458;192459;192460;192461;192462;192463;192464;192465;192466;192467;192468	260366;260367;260368;260369;260370;260371;260372;260373;260374;260375;260376;260377;260378;260379	260376			14	
LIAHAGSLTNLAK	1	Unmodified	1307.7561	0.75613491	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	2	1	3	42.97	41.184	2;3	2.8597E-06	34566	160511_QHF_FH_JSI10i_3	134.56	123.66			1.339	1.3551	28.121	9	8	Median	1.3202	1.0732	30.987	3	2	Plateau	1.1474	1.3263	15.4	2	2	Median	1.617	1.548	NaN	1	1	Median	0.96684	0.97809	37.746	3	3	Plateau	2763300000	1401800000	1361500000	455350000	209870000	245490000	366680000	191470000	175210000	433710000	195900000	237810000	1507500000	804590000	702950000	31076	153	29409	192469;192470;192471;192472;192473;192474;192475;192476;192477	260380;260381;260382;260383;260384;260385;260386;260387;260388;260389;260390;260391	260382			12	
LIAINANDPEASK	1	Unmodified	1354.7092	0.70924429	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.18	6	1				4	4			2	5	4	4	47.127	41.757	2	1.6888E-08	22412	160513_QHF_FH_JSI10Kac_3	116.77	94.68			1.0907	1.1299	50.317	12	6	Median	1.1896	0.96912	40.279	2	1	Median	1.2383	1.4815	76.93	4	2	Median	1.0918	1.0507	5.2273	3	1	Plateau	1.0554	1.0955	22.936	3	2	Median	1987800000	842080000	1145800000	308210000	124880000	183330000	543770000	239460000	304310000	611770000	252690000	359080000	524110000	225060000	299050000	31077	4682	29410	192478;192479;192480;192481;192482;192483;192484;192485;192486;192487;192488;192489;192490;192491;192492	260392;260393;260394;260395;260396;260397;260398;260399;260400;260401;260402;260403;260404;260405;260406;260407;260408;260409	260408			17	
LIALFWK	1	Unmodified	889.54256	0.5425603	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	3	2	2	4	85.352	80.471	2	0.0066345	41833	160513_QHF_FH_JSI11Kac_6	91.26	53.021			2.625	2.4668	100.04	11	9	Median	1.2233	1.0543	98.773	3	3	Plateau	1.4404	1.7024	83.243	2	1	Median	2.7839	2.6372	130.45	2	1	Median	1.3773	1.4389	127.86	4	4	Median	1596700000	792970000	803690000	527170000	254520000	272650000	449600000	261520000	188080000	309590000	147800000	161790000	310300000	129130000	181170000	31078	708	29411	192493;192494;192495;192496;192497;192498;192499;192500;192501;192502;192503	260410;260411;260412;260413;260414;260415;260416;260417;260418;260419;260420;260421;260422	260412			13	
LIALIWPSEWQMIQK	1	Unmodified	1855.0066	0.0066122879	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									4		1	2	1	96.705	88.212	2;3	3.074E-17	49735	160513_QHF_FH_JSI11Kac_6	142.83	135.24			0.78709	0.74799	44.499	4	2	Median	NaN	NaN	NaN	0	0	Median	0.37802	0.4507	NaN	1	1	Median	0.78709	0.74799	39.499	2	1	Median	1.09	1.1472	NaN	1	0	Median	300130000	162690000	137440000	0	0	0	43527000	34250000	9276800	187820000	93066000	94749000	68789000	35371000	33418000	31079	3331	29412	192504;192505;192506;192507	260423;260424;260425;260426	260423			4	
LIALLEVLSQK	1	Unmodified	1225.7646	0.76457433	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.61		4	14						16	9	9	7	9	97.612	93.683	2;3	4.0672E-24	45509	160513_QHF_FH_JSI12Kac_6	185.6	119.52			0.11493	0.09968	344.75	18	17	Median	1.3462	1.0624	372.49	6	6	Median	0.057298	0.066131	352.29	5	5	Median	1.0201	1.006	373.82	4	4	Median	0.042886	0.044008	420.95	3	2	Median	25493000000	12064000000	13429000000	5093300000	2521700000	2571700000	6629000000	3565200000	3063800000	5609500000	2300600000	3308900000	8161100000	3676300000	4484700000	31080	1192;512;2527	29413	192508;192509;192510;192511;192512;192513;192514;192515;192516;192517;192518;192519;192520;192521;192522;192523;192524;192525;192526;192527;192528;192529;192530;192531;192532;192533;192534;192535;192536;192537;192538;192539;192540;192541	260427;260428;260429;260430;260431;260432;260433;260434;260435;260436;260437;260438;260439;260440;260441;260442;260443;260444;260445;260446;260447;260448;260449;260450;260451;260452;260453;260454;260455;260456;260457;260458;260459;260460	260454			34	
LIALLEVLSQKK	2	Unmodified	1353.8595	0.85953735	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	1	3	3	90.357	86.359	2;3	7.4137E-10	41540	160513_QHF_FH_JSI12Kac_6	116.24	97.106			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31081	1192	29414	192542;192543;192544;192545;192546;192547;192548;192549;192550;192551	260461;260462;260463;260464;260465;260466;260467;260468;260469;260470	260469			10	
LIALLVK	1	Unmodified	768.54731	0.54731133	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.301	63.158	2	0.029706	54461	160511_QHF_FH_JSI12i_3	54.525	29.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41993000	41993000	0	0	0	0	0	0	0	19581000	19581000	0	22412000	22412000	0	31082	21	29415	192552;192553	260471;260472	260472			2	
LIALSIDSVEDHLAWSK	1	Unmodified	1895.9993	0.9992783	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.24	4.82		39	15						9	15	10	18	20	95.459	93.694	2;3	2.4301E-190	44956	160513_QHF_FH_JSI10Kac_6	314.04	287.92			0.9295	0.92346	28.317	48	25	Median	1.1075	0.97115	27.507	11	7	Median	0.72982	0.90865	28.547	9	3	Median	0.94718	0.92537	32.162	13	8	Median	0.8827	0.93865	25.322	15	7	Median	7175700000	4100600000	3075100000	1467200000	715910000	751270000	2370600000	1616800000	753850000	1479200000	866090000	613140000	1858600000	901810000	956840000	31083	1333	29416	192554;192555;192556;192557;192558;192559;192560;192561;192562;192563;192564;192565;192566;192567;192568;192569;192570;192571;192572;192573;192574;192575;192576;192577;192578;192579;192580;192581;192582;192583;192584;192585;192586;192587;192588;192589;192590;192591;192592;192593;192594;192595;192596;192597;192598;192599;192600;192601;192602;192603;192604;192605;192606;192607;192608;192609;192610;192611;192612;192613;192614;192615;192616	260473;260474;260475;260476;260477;260478;260479;260480;260481;260482;260483;260484;260485;260486;260487;260488;260489;260490;260491;260492;260493;260494;260495;260496;260497;260498;260499;260500;260501;260502;260503;260504;260505;260506;260507;260508;260509;260510;260511;260512;260513;260514;260515;260516;260517;260518;260519;260520;260521;260522;260523;260524;260525;260526;260527;260528;260529;260530;260531;260532;260533;260534;260535;260536;260537;260538;260539;260540;260541;260542;260543;260544;260545;260546;260547;260548;260549;260550;260551;260552;260553;260554;260555;260556;260557;260558;260559;260560;260561;260562;260563;260564;260565;260566;260567;260568;260569;260570;260571;260572;260573;260574;260575;260576;260577;260578;260579;260580;260581;260582;260583;260584;260585;260586;260587;260588;260589;260590;260591;260592;260593;260594;260595;260596;260597	260596			125	
LIAMKTEK	2	Acetyl (K)	974.54705	0.54705333	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.831						1	3	4	1	1	2	2	4	40.535	30.841	2	0.0029393	17036	160513_QHF_FH_JSI9Kac_5	94.302	37.021			0.9697	1.0176	14.159	9	0	Median	1.0144	0.85186	NaN	1	0	Median	0.80929	0.9382	11.49	2	0	Median	1.0462	1.0362	10.158	2	0	Median	1.0195	1.1265	13.355	4	0	Median	899120000	462820000	436300000	38417000	18122000	20295000	322620000	182200000	140420000	219210000	90639000	128570000	318870000	171860000	147010000	31084	2686	29417	192617;192618;192619;192620;192621;192622;192623;192624;192625	260598;260599;260600;260601;260602	260598	2630		5	
LIAMKTEK	2	Acetyl (K);Oxidation (M)	990.54197	0.54196796	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	1	0	1	1	By MS/MS	By MS/MS		By MS/MS	13.2	0.433						3	1			1	1		2	23.082	13.057	2	0.0017481	5587	160513_QHF_FH_JSI9Kac_3	90.657	37.49			0.92499	0.91722	11.321	4	0	Median	1.0479	0.86665	NaN	1	0	Median	0.67373	0.81016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92499	1.0064	5.1039	2	0	Median	485240000	246040000	239200000	257860000	128740000	129120000	40857000	23692000	17165000	0	0	0	186520000	93609000	92912000	31085	2686	29417	192626;192627;192628;192629	260603;260604;260605	260603	2630	2101	3	
LIAMYNDGAEVWDTK	1	Unmodified	1724.808	0.80797206	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.993	72.718	2	0.00038577	63712	160511_QHF_FH_JSI11i_2	70.488	58.275			0.49916	0.51725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49916	0.51725	NaN	1	1	Median	6285500	4783000	1502400	0	0	0	0	0	0	0	0	0	6285500	4783000	1502400	31086	4564	29418	192630;192631	260606;260607	260607			2	
LIANFTVTSLQHWEFAPNSVHYLLSLWQR	0	Unmodified	3469.7935	0.79353005	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.284	91.563	4	2.8594E-16	53252	160513_QHF_FH_JSI10Kac_6	136.16	117.37			0.72337	0.83181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72337	0.83181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186020000	147380000	38636000	0	0	0	186020000	147380000	38636000	0	0	0	0	0	0	31087	5327	29419	192632	260608	260608			1	
LIANMPESGPSYEFHLTR	0	Oxidation (M)	2076.9939	0.99387535	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	58.093	57.921	3	1.2882E-05	51390	160511_QHF_FH_JSI11i_3	83.253	76.59			0.93299	0.86369	31.123	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93299	0.86369	NaN	1	0	Median	1.1688	1.1823	35.777	2	1	Median	230310000	123640000	106670000	0	0	0	0	0	0	94201000	54747000	39454000	136110000	68891000	67217000	31088	4109	29420	192633;192634;192635	260609;260610;260611;260612	260610		2391	4	
LIANMPESGPSYEFHLTR	0	Unmodified	2060.999	0.99896073	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.18		2	6						1	1	3	2	3	69.898	68.558	2;3	2.2891E-17	59408	160511_QHF_FH_JSI12i_3	136.66	126.19			0.98049	1.0201	15.47	7	1	Median	NaN	NaN	NaN	0	0	Median	0.80222	0.95154	11.604	3	1	Median	1.0329	0.97385	11.3	2	0	Median	1.1653	1.1982	13.874	2	0	Median	1517700000	782510000	735230000	0	0	0	426300000	242250000	184050000	633180000	303930000	329250000	458250000	236330000	221930000	31089	4109	29420	192636;192637;192638;192639;192640;192641;192642;192643;192644	260613;260614;260615;260616;260617;260618;260619;260620;260621;260622;260623;260624	260621			12	
LIANNTTVER	0	Unmodified	1129.6091	0.60913632	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							2	3	3	3	19.74	19.227	2	3.0924E-06	15832	160511_QHF_FH_JSI12i_2	110.87	53.694			0.88141	0.85027	17.434	10	2	Median	0.87692	0.73825	8.0892	2	1	Median	0.80209	0.95761	23.12	2	1	Median	0.87924	0.88906	19.768	3	0	Median	0.80434	0.88628	13.789	3	0	Plateau	1244400000	694730000	549670000	263120000	132990000	130130000	349380000	212270000	137110000	354360000	195110000	159240000	277550000	154360000	123190000	31090	758	29421	192645;192646;192647;192648;192649;192650;192651;192652;192653;192654;192655	260625;260626;260627;260628;260629;260630;260631;260632;260633;260634;260635;260636;260637	260628			13	
LIANNTTVERR	0	Unmodified	1285.7102	0.71024735	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							3	2			14.952	14.103	2;3	6.1618E-06	11124	160511_QHF_FH_JSI9i_3	80.834	51.535			1.1867	1.1306	15.933	5	0	Median	1.2455	1.0244	22.266	3	0	Median	0.97518	1.1583	3.4224	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	325680000	152070000	173610000	200400000	92405000	108000000	125280000	59663000	65612000	0	0	0	0	0	0	31091	758	29422	192656;192657;192658;192659;192660	260638;260639;260640;260641;260642;260643	260640			6	
LIAPVAEEEATVPNNK	1	Unmodified	1693.8887	0.88866522	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	5.86	8	9	8		3	7	6	5		9	13	12	12	56.335	51.073	2;3	1.6755E-97	46242	160511_QHF_FH_JSI10i_2	241.39	199.04			0.98103	1.0011	26.724	44	2	Median	1.0785	0.89776	9.2983	9	1	Median	0.87123	1.0223	11.95	12	0	Median	1.0129	1.0021	7.9011	11	0	Median	0.94074	1.0094	47.323	12	1	Plateau	60837000000	25460000000	35376000000	14082000000	5249000000	8833200000	17255000000	7731900000	9522600000	14332000000	5998600000	8333100000	15168000000	6480700000	8687300000	31092	864	29423	192661;192662;192663;192664;192665;192666;192667;192668;192669;192670;192671;192672;192673;192674;192675;192676;192677;192678;192679;192680;192681;192682;192683;192684;192685;192686;192687;192688;192689;192690;192691;192692;192693;192694;192695;192696;192697;192698;192699;192700;192701;192702;192703;192704;192705;192706	260644;260645;260646;260647;260648;260649;260650;260651;260652;260653;260654;260655;260656;260657;260658;260659;260660;260661;260662;260663;260664;260665;260666;260667;260668;260669;260670;260671;260672;260673;260674;260675;260676;260677;260678;260679;260680;260681;260682;260683;260684;260685;260686;260687;260688;260689;260690;260691;260692;260693;260694;260695;260696;260697;260698;260699;260700;260701;260702;260703;260704;260705;260706;260707;260708;260709;260710;260711;260712;260713;260714;260715;260716;260717;260718;260719;260720;260721;260722;260723;260724;260725;260726;260727;260728;260729;260730;260731;260732;260733;260734;260735;260736;260737;260738;260739;260740;260741;260742;260743;260744;260745;260746;260747;260748;260749;260750;260751;260752;260753	260747			109	
LIAQACVSIFPDSGHFNVDNIR	0	Unmodified	2472.222	0.22197781	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		86.99	86.99	3	2.7864E-07	77529	160511_QHF_FH_JSI11i_3	96.848	88.139			0.42627	0.39952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42627	0.39952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	160730000	115600000	45130000	0	0	0	0	0	0	160730000	115600000	45130000	0	0	0	31093	1721	29424	192707	260754	260754			1	
LIAQDYK	1	Unmodified	849.45962	0.45961853	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			19.639	18.797	2	0.011246	16387	160511_QHF_FH_JSI10i_2	71.342	26.65			0.92539	0.95343	31.178	2	0	Median	1.3339	1.1886	NaN	1	0	Median	0.64198	0.76479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8201200000	3851400000	4349800000	5106200000	2098200000	3008100000	3095000000	1753200000	1341800000	0	0	0	0	0	0	31094	3903	29425	192708;192709	260755;260756	260756			2	
LIAQNLELNETIK	1	Unmodified	1497.8403	0.84025847	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	64.339	63.421	2	0.0091338	55253	160511_QHF_FH_JSI11i_2	58.223	31.709			0.22208	0.23294	103.8	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11255	0.11181	NaN	1	1	Median	0.4382	0.4853	NaN	1	1	Median	63343000	42665000	20678000	0	0	0	0	0	0	32701000	22610000	10091000	30642000	20055000	10587000	31095	1779	29426	192710;192711	260757;260758	260758			2	
LIASQKFTDK	2	Acetyl (K)	1191.6499	0.6499385	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		52.021	41.287	2	0.0077407	24153	160513_QHF_FH_JSI11Kac_4	71.614	52.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2175900	0	2175900	0	0	0	0	0	0	2175900	0	2175900	0	0	0	31096	369	29427	192712	260759	260759	188		1	
LIASSLVAGEK	1	Unmodified	1086.6285	0.62847478	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.57		4	1				1	1		1	2	2	2	47.739	44.093	2	0.0010908	38546	160511_QHF_FH_JSI9i_2	66.19	21.109			0.97802	1.0009	21.915	7	1	Median	1.146	1.0009	NaN	1	0	Median	0.884	1.0596	12.014	2	0	Median	1.19	1.1779	44.663	2	1	Median	1.0095	1.0702	22.971	2	0	Median	540780000	259190000	281590000	104620000	49137000	55486000	126900000	62243000	64652000	131990000	58532000	73459000	177270000	89276000	87994000	31097	2591	29428	192713;192714;192715;192716;192717;192718;192719	260760;260761;260762;260763;260764;260765;260766;260767;260768	260762			9	
LIASVAGSVER	0	Unmodified	1100.619	0.61897272	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	37.22	36.519	2	0.0014697	32123	160511_QHF_FH_JSI10i_2	76.1	25.493			1.5422	1.7465	62.847	7	5	Median	2.0303	1.7465	NaN	1	1	Median	0.85551	1.0251	83.905	2	2	Median	1.4739	1.436	71.02	2	1	Median	1.614	1.7655	90.059	2	1	Median	429300000	197680000	231620000	44650000	18976000	25674000	129410000	66867000	62548000	136010000	59725000	76289000	119220000	52114000	67110000	31098	2476	29429	192720;192721;192722;192723;192724;192725;192726	260769;260770;260771;260772;260773;260774;260775	260774			6	
LIASYCNVGDIEGASK	1	Unmodified	1695.8138	0.81378572	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.717	56.057	2	5.5899E-11	50942	160511_QHF_FH_JSI12i_1	102.33	68.456			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31099	1544	29430	192727	260776	260776			1	
LIATSNKPAVK	2	Unmodified	1140.6867	0.68665836	4690	Q9H3F6	KCTD10	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	16.29	15.816	3	0.0021251	12463	160511_QHF_FH_JSI12i_3	61.958	38.209			0.4704	0.51827	21.138	2	2	Median	NaN	NaN	NaN	0	0	Median	0.36714	0.44631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6027	0.60182	NaN	1	1	Median	185710000	102130000	83580000	0	0	0	82616000	49798000	32818000	0	0	0	103090000	52333000	50762000	31100	4690	29431	192728;192729;192730;192731;192732	260777;260778;260779;260780;260781;260782	260781			6	
LIAYGHITGNAPDSGAPGK	1	Unmodified	1837.9323	0.93226137	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	2	3	2	46.136	40.564	3	9.9132E-19	34562	160511_QHF_FH_JSI12i_3	163.56	146.48			0.80428	0.7893	80.647	6	4	Median	0.3741	0.30891	NaN	1	1	Median	0.64147	0.73478	155.01	2	2	Median	0.91744	0.87294	22.105	2	1	Median	0.81628	0.83442	NaN	1	0	Median	530320000	259830000	270500000	5433900	4234900	1198900	40141000	16853000	23289000	187770000	93310000	94461000	296980000	145430000	151550000	31101	5718	29432	192733;192734;192735;192736;192737;192738;192739;192740	260783;260784;260785;260786;260787;260788;260789;260790;260791;260792;260793	260791			11	
LIAYGHLTGNAPDSTTPGK	1	Unmodified	1911.969	0.96904081	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		2	1	1	45.776	43.18	3	7.4917E-11	38088	160511_QHF_FH_JSI11i_3	127.59	114.55			0.92715	0.99286	15.766	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92715	1.0743	NaN	1	0	Median	0.86222	0.79284	NaN	1	0	Median	0.96467	0.99286	NaN	1	0	Median	389520000	201750000	187770000	0	0	0	49930000	26792000	23138000	153980000	80431000	73544000	185620000	94522000	91093000	31102	5719	29433	192741;192742;192743;192744	260794;260795;260796;260797;260798;260799;260800	260795			7	
LICCDILDVLDK	1	Unmodified	1475.7364	0.73638702	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	97.113	96.888	2	1.2844E-07	85798	160511_QHF_FH_JSI10i_2	135.86	98.514			0.96472	1.0159	28.263	9	2	Median	1.2364	1.0795	32.664	3	2	Plateau	0.97284	1.1828	16.303	2	0	Median	0.93369	0.91261	5.1577	2	0	Median	1.0887	1.1759	20.694	2	0	Median	421710000	209260000	212450000	89430000	39916000	49514000	124780000	61720000	63065000	108210000	60859000	47354000	99279000	46761000	52518000	31103	1990	29434	192745;192746;192747;192748;192749;192750;192751;192752;192753	260801;260802;260803;260804;260805;260806;260807;260808;260809;260810;260811;260812;260813;260814;260815;260816	260816			16	
LICLVTGSPSIR	0	Unmodified	1314.733	0.73295662	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.209	62.923	2	0.0063429	54285	160511_QHF_FH_JSI12i_3	52.79	34.565			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31104	3119	29435	192754	260817	260817			1	
LICTIQQHHK	1	Unmodified	1276.671	0.67102507	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.543	10.638	3	0.010693	7887	160511_QHF_FH_JSI12i_3	43.477	30.469			1.3268	1.3368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3268	1.3368	NaN	1	1	Median	82851000	38756000	44095000	0	0	0	0	0	0	0	0	0	82851000	38756000	44095000	31105	3736	29436	192755	260818	260818			1	
LIDAETTAAAWPNVAAVSITGRK	1	Unmodified	2354.2594	0.25940917	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		84.119	83.515	3	0.00024517	74616	160511_QHF_FH_JSI11i_3	43.176	35.351			0.69879	0.71441	12.282	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69575	0.77923	NaN	1	0	Median	0.70184	0.65499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71424000	42084000	29340000	0	0	0	21960000	11898000	10062000	49464000	30186000	19278000	0	0	0	31106	2817	29437	192756;192757	260819;260820;260821	260819			3	
LIDDEVR	0	Unmodified	858.4447	0.44469675	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	20.658	20.058	2	0.039053	17024	160511_QHF_FH_JSI9i_1	47.849	21.955			0.99867	0.89498	15.872	3	0	Median	1.079	0.89498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78027	0.75877	NaN	1	0	Median	0.99867	1.0422	NaN	1	0	Median	426270000	208470000	217800000	114710000	60553000	54161000	0	0	0	146040000	75683000	70354000	165520000	72232000	93288000	31107	5640	29438	192758;192759;192760	260822;260823;260824;260825	260825			4	
LIDDMVAQAMK	1	Unmodified	1233.6097	0.60972994	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.707	5	2	1							1	2	2	3	60.89	60.179	2	3.3414E-18	51309	160511_QHF_FH_JSI12i_2	163.32	146.54			1.0706	1.067	142.61	6	2	Median	1.1531	0.95476	NaN	1	0	Median	2.6303	3.1258	294.47	2	1	Median	1.7436	1.6978	NaN	1	1	Median	0.97968	1.067	5.9524	2	0	Median	3573200000	1654200000	1919000000	519510000	244940000	274570000	1085800000	475510000	610340000	729230000	251260000	477970000	1238600000	682470000	556110000	31108	576	29439	192761;192762;192763;192764;192765;192766;192767;192768	260826;260827;260828;260829;260830;260831;260832;260833;260834	260827			9	
LIDDMVAQVLK	1	Unmodified	1243.6846	0.68460945	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	79.928	79.482	2	0.0038568	72384	160511_QHF_FH_JSI11i_1	66.962	44.876			1.0177	1.084	68.417	5	4	Median	2.9242	2.3705	NaN	1	1	Median	0.55714	0.65713	NaN	1	1	Median	1.4558	1.4057	100.16	2	2	Median	1.0177	1.084	NaN	1	0	Median	208510000	88029000	120480000	18638000	6775600	11863000	46198000	24996000	21202000	100650000	40374000	60274000	43024000	15883000	27141000	31109	1635	29440	192769;192770;192771;192772;192773	260835;260836;260837;260838;260839	260836			5	
LIDDVHR	0	Unmodified	866.46102	0.46101552	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		11.795	11.414	2	0.014706	8731	160511_QHF_FH_JSI11i_2	65.803	23.329			0.81063	0.90677	5.3597	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70761	0.87305	NaN	1	0	Median	0.92864	0.9418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	200200000	106210000	93984000	0	0	0	89173000	46637000	42537000	111020000	59578000	51447000	0	0	0	31110	899	29441	192774;192775	260840;260841;260842	260840			3	
LIDDYGVEEEPAELPEGTSLTVDNK	1	Unmodified	2732.2916	0.29161632	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	79.575	79.27	3	1.5789E-06	72059	160511_QHF_FH_JSI12i_1	61.437	58.162			0.90549	0.92548	23.567	5	4	Median	NaN	NaN	NaN	0	0	Median	0.9892	1.1677	4.0889	2	2	Median	0.76146	0.7388	10.446	2	2	Median	0.90549	0.92548	NaN	1	0	Median	294570000	165820000	128750000	0	0	0	149060000	81534000	67530000	88392000	52343000	36049000	57119000	31947000	25172000	31111	2152	29442	192776;192777;192778;192779;192780	260843;260844;260845;260846;260847;260848	260845			6	
LIDEVIEDTRYTLPLTEGK	1	Unmodified	2204.1576	0.15762944	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	84.922	84.325	3	0.00019076	73151	160511_QHF_FH_JSI12i_3	67.995	36.194			2.035	1.7476	95.765	7	7	Median	2.035	1.7476	NaN	1	1	Median	0.85637	1.0475	129.16	2	2	Median	0.87227	0.88084	154.25	2	2	Median	1.1281	1.193	106.06	2	2	Median	339380000	174410000	164960000	38035000	16791000	21244000	96631000	49435000	47197000	108450000	60411000	48043000	96255000	47776000	48479000	31112	5161	29443	192781;192782;192783;192784;192785;192786;192787	260849;260850;260851;260852;260853;260854;260855;260856	260856			8	
LIDFLECGK	1	Unmodified	1093.5478	0.54778161	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	67.109	65.967	2	0.012698	57500	160511_QHF_FH_JSI11i_2	47.198	14.357			0.80395	0.87885	53.864	3	3	Median	NaN	NaN	NaN	0	0	Median	0.48293	0.58936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1125	1.2265	47.136	2	2	Median	499210000	254500000	244710000	0	0	0	137750000	72735000	65010000	0	0	0	361470000	181770000	179700000	31113	1128	29444	192788;192789;192790;192791	260857;260858;260859;260860	260859			4	
LIDFLESGK	1	Unmodified	1020.5492	0.54916182	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	6.21	6	3					1	3		3	2	4	4	67.343	63.611	2	0.0012901	54662	160511_QHF_FH_JSI12i_2	78.149	54.194			0.83028	0.80441	87.731	13	9	Median	0.71914	0.60603	103.66	3	2	Median	0.43747	0.5137	113.06	2	2	Median	0.88612	0.86399	102.51	4	3	Median	0.71096	0.78328	87.122	4	2	Median	2132100000	1159800000	972390000	462810000	234240000	228570000	230020000	143530000	86489000	921750000	451720000	470030000	517560000	330260000	187300000	31114	3893	29445	192792;192793;192794;192795;192796;192797;192798;192799;192800;192801;192802;192803;192804	260861;260862;260863;260864;260865;260866;260867;260868;260869;260870;260871;260872	260864			12	
LIDGIVLTK	1	Unmodified	970.60628	0.60628277	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	3	1	59.465	58.801	2	0.00055425	51034	160511_QHF_FH_JSI11i_2	78.516	41.495			0.88953	0.93762	52.679	8	5	Median	0.61709	0.52304	NaN	1	1	Median	0.94073	1.1276	58.295	3	2	Median	0.90053	0.91008	64.236	3	2	Median	0.87866	0.96599	NaN	1	0	Median	994830000	498310000	496520000	116990000	63318000	53677000	281840000	140540000	141300000	401490000	212090000	189410000	194500000	82363000	112140000	31115	899	29446	192805;192806;192807;192808;192809;192810;192811;192812	260873;260874;260875;260876;260877;260878;260879;260880;260881;260882;260883	260881			11	
LIDHLENTK	1	Unmodified	1081.5768	0.57677356	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	18.426	17.81	2	0.0041947	14385	160511_QHF_FH_JSI12i_2	67.993	34.196			0.81709	0.83358	88.275	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81709	0.83358	88.275	2	2	Median	NaN	NaN	NaN	0	0	Median	116610000	54625000	61984000	0	0	0	16826000	13044000	3781900	76215000	41581000	34634000	23568000	0	23568000	31116	4640	29447	192813;192814;192815;192816;192817;192818	260884;260885;260886;260887;260888;260889	260884			6	
LIDIFYPGDQQSVTFGTK	1	Unmodified	2028.0204	0.020407676	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								2	3	3	3	95.091	94.887	2;3	4.49E-11	83252	160511_QHF_FH_JSI9i_2	141.38	126.82			1.3105	1.2812	22.776	9	4	Median	1.6105	1.394	24.68	2	1	Median	0.79146	0.91092	25.027	2	0	Median	1.3676	1.3293	5.2067	2	1	Median	1.3105	1.298	18.679	3	2	Plateau	234930000	127240000	107680000	54488000	26823000	27666000	72962000	50801000	22161000	64769000	28346000	36422000	42709000	21274000	21435000	31117	1837	29448	192819;192820;192821;192822;192823;192824;192825;192826;192827;192828;192829	260890;260891;260892;260893;260894;260895;260896;260897;260898;260899;260900;260901	260899			11	
LIDLAYTPFHAVLK	1	Unmodified	1599.9025	0.90246479	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		90.636	90.344	3	0.00047958	80556	160511_QHF_FH_JSI11i_3	58.268	51.54			1.28	1.1872	42.67	3	2	Plateau	3.2346	2.7763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4603	1.4175	25.075	2	1	Median	NaN	NaN	NaN	0	0	Median	51681000	22447000	29234000	10896000	3926900	6969400	0	0	0	40785000	18520000	22264000	0	0	0	31118	4250	29449	192830;192831;192832	260902;260903;260904	260902			3	
LIDLCQPTQK	1	Unmodified	1214.6329	0.63290823	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.051	40.678	2	0.0096603	36642	160511_QHF_FH_JSI11i_1	58.433	35.904			0.74405	0.78724	10.807	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63178	0.72932	NaN	1	1	Median	0.87627	0.84976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95601000	53065000	42536000	0	0	0	35761000	18149000	17612000	59840000	34916000	24923000	0	0	0	31119	2560	29450	192833;192834	260905;260906	260905			2	
LIDLHSPSEIVK	1	Unmodified	1349.7555	0.7554662	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.56	1	6	3					2	1	4	2	4	3	58.567	55.433	2;3	2.1511E-11	47534	160511_QHF_FH_JSI12i_2	146.07	114.89			0.74537	0.80864	85.49	13	5	Median	0.87275	0.7279	98.745	4	2	Median	0.74201	0.87214	10.691	2	0	Median	0.7811	0.78713	93.775	4	1	Median	0.68372	0.68771	110.84	3	2	Median	3256500000	2366000000	890540000	840380000	575840000	264540000	59859000	31031000	28828000	1306900000	982130000	324750000	1049400000	776990000	272430000	31120	1918	29451	192835;192836;192837;192838;192839;192840;192841;192842;192843;192844;192845;192846;192847	260907;260908;260909;260910;260911;260912;260913;260914;260915;260916;260917;260918;260919;260920;260921;260922;260923	260908			17	
LIDLHTNVATAVLEHIK	1	Unmodified	1886.0625	0.062547262	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	90.446	89.782	4	7.416E-06	77479	160511_QHF_FH_JSI12i_3	88.992	78.205			0.88324	0.79651	45.828	5	1	Median	1.6141	1.3441	NaN	1	0	Median	0.46806	0.54569	42.999	2	1	Median	0.88324	0.79651	NaN	1	0	Median	1.0468	1.0868	NaN	1	0	Median	190790000	94408000	96385000	13317000	5432600	7884000	27346000	18721000	8625200	33629000	16545000	17084000	116500000	53709000	62792000	31121	3785	29452	192848;192849;192850;192851;192852	260924;260925;260926;260927;260928;260929;260930;260931;260932;260933;260934	260932			11	
LIDNISSREEIDHAEYYLYK	1	Unmodified	2470.2016	0.20161952	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	69.379	69.098	3;4	2.4744E-10	59781	160511_QHF_FH_JSI12i_3	120.11	104.69			0.99864	1.0537	22.29	5	2	Median	NaN	NaN	NaN	0	0	Median	0.99864	1.2156	NaN	1	0	Median	0.94577	0.86658	27.649	2	1	Median	1.1005	1.1261	13.871	2	1	Median	631860000	261840000	370020000	0	0	0	84898000	45940000	38958000	138880000	65931000	72950000	408080000	149970000	258110000	31122	3844	29453	192853;192854;192855;192856;192857;192858	260935;260936;260937;260938;260939;260940;260941	260939			6	
LIDPQVDESR	0	Unmodified	1170.5881	0.58806652	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		30.486	29.875	2	0.012299	26660	160511_QHF_FH_JSI11i_1	45.368	30.217			1.1244	0.92207	31.986	3	1	Median	1.1244	0.92207	NaN	1	0	Median	0.54104	0.62961	NaN	1	1	Median	1.2655	1.1886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187630000	90774000	96856000	74958000	36979000	37979000	48449000	28277000	20171000	64223000	25518000	38705000	0	0	0	31123	3009	29454	192859;192860;192861	260942;260943	260942			2	
LIDQEIK	1	Unmodified	857.48583	0.48583328	2838	Q4L180	FILIP1L	Filamin A-interacting protein 1-like	yes	yes	0	0	0	0	By MS/MS				1.5	0.5	1	1								2				38.921	37.79	2	0.011105	33456	160511_QHF_FH_JSI9i_1	71.949	4.9558			1.4451	1.2081	13.117	2	0	Median	1.4451	1.2081	13.117	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	237500000	106240000	131260000	237500000	106240000	131260000	0	0	0	0	0	0	0	0	0	31124	2838	29455	192862;192863	260944	260944			1	
LIDREIISHDTR	0	Unmodified	1466.7841	0.78414057	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.014	27.633	4	0.026054	22374	160511_QHF_FH_JSI9i_3	27.649	15.289			1.2515	0.999	NaN	1	0	Median	1.2515	0.999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161500000	65710000	95794000	161500000	65710000	95794000	0	0	0	0	0	0	0	0	0	31125	764	29456	192864	260945;260946	260945			2	
LIDSSGSASVLTHSSSGNSLKR	1	Unmodified	2202.124	0.1240379	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			37.743	36.275	4	0.0015975	29619	160511_QHF_FH_JSI9i_3	43.768	25.944			0.81167	0.785	6.9409	2	2	Median	0.91193	0.74741	NaN	1	1	Median	0.72243	0.82449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60980000	38395000	22585000	28981000	14292000	14689000	32000000	24104000	7895600	0	0	0	0	0	0	31126	4248	29457	192865;192866	260947;260948;260949	260949			3	
LIDSVPLMNLLLTLLSTSYR	0	Unmodified	2261.2705	0.27049113	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		105.27	96.874	2;3	2.6239E-138	58907	160513_QHF_FH_JSI10Kac_6	260.18	224.44			0.97305	0.98084	48.236	4	1	Median	0.92492	0.77736	1.2162	2	0	Median	1.0167	1.227	NaN	1	0	Median	2.1594	2.146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	671400000	359370000	312020000	394670000	218380000	176290000	269770000	138510000	131260000	6952700	2488400	4464300	0	0	0	31127	2947	29458	192867;192868;192869;192870	260950;260951;260952;260953	260953			4	
LIDSVPLMNLLLTLLSTSYRK	1	Unmodified	2389.3655	0.36545415	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	102.83	95.296	2;3	4.355E-72	57350	160513_QHF_FH_JSI10Kac_6	244.58	209.47			0.96029	1.0984	12.533	6	2	Median	1.5123	1.2768	NaN	1	0	Median	0.98682	1.1098	1.487	3	2	Plateau	0.94939	0.92685	NaN	1	0	Median	0.84858	0.91886	NaN	1	0	Median	10858000000	5120200000	5737500000	1105500000	494690000	610810000	9698000000	4598200000	5099800000	32594000	14938000	17656000	21536000	12330000	9205200	31128	2947	29459	192871;192872;192873;192874;192875;192876	260954;260955;260956;260957;260958;260959;260960;260961;260962;260963	260961			10	
LIDSVPLMNLLLTLLSTSYRK	1	Oxidation (M)	2405.3604	0.36036877	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			99.978	92.54	3	2.3283E-05	55284	160513_QHF_FH_JSI10Kac_6	118.16	102.26			1.134	1.147	8.1144	2	1	Median	1.4124	1.2147	NaN	1	0	Median	0.91045	1.083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	703770000	307080000	396690000	374960000	154400000	220570000	328800000	152690000	176120000	0	0	0	0	0	0	31129	2947	29459	192877;192878	260964;260965	260965		2171	2	
LIDSWMGK	1	Unmodified	948.47389	0.47388839	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.632	1	3	1								1	3	1	48.371	47.712	2	0.0092504	42040	160511_QHF_FH_JSI10i_2	65.038	38.436			1.0082	1.049	179.55	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0082	1.2315	NaN	1	1	Median	0.046419	0.047151	246.42	3	1	Plateau	0.9584	1.049	NaN	1	0	Median	721410000	415210000	306200000	0	0	0	224860000	122320000	102550000	251890000	185560000	66329000	244650000	107330000	137320000	31130	1579	29460	192879;192880;192881;192882;192883	260966;260967;260968;260969;260970	260970			5	
LIDVLENR	0	Unmodified	970.54475	0.54474515	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			48.752	47.792	2	0.0088797	42172	160511_QHF_FH_JSI10i_2	65.88	45.598			0.52352	0.6286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52352	0.6286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91936000	53708000	38228000	0	0	0	91936000	53708000	38228000	0	0	0	0	0	0	31131	4449	29461	192884	260971	260971			1	
LIDVNHYAK	1	Unmodified	1071.5713	0.57129425	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		28.555	27.906	3	0.00021707	23454	160511_QHF_FH_JSI11i_2	82.287	66.084			0.55313	0.60541	7.244	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4766	0.57518	NaN	1	1	Median	0.64195	0.63723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111660000	60747000	50917000	0	0	0	65156000	38494000	26662000	46508000	22254000	24254000	0	0	0	31132	2470	29462	192885;192886	260972;260973	260972			2	
LIDWGLAEFYHPAQEYNVR	0	Unmodified	2320.1277	0.12766671	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			2						2			2	2	89.958	85.261	3	5.7896E-14	83196	160511_QHF_FH_JSI11i_3	147.06	130.94			1.2153	1.1066	9.3284	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0924	1.0459	5.4472	2	1	Median	1.1664	1.1912	7.877	2	0	Median	492730000	231980000	260760000	0	0	0	0	0	0	186340000	81999000	104340000	306390000	149980000	156420000	31133	1165	29463	192887;192888;192889;192890	260974;260975;260976;260977;260978;260979;260980;260981;260982	260976			9	
LIDWGLAEFYHPGQEYNVR	0	Unmodified	2306.112	0.11201665	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.3		5	2						3	2	2	3	3	91.032	88.383	3	1.8481E-33	82436	160511_QHF_FH_JSI11i_3	194.51	186.12			0.98516	1.0208	17.305	10	4	Median	1.0677	0.92751	20.637	2	2	Median	0.91339	1.1069	21.699	2	2	Median	1.1505	1.0833	10.81	3	0	Median	0.83795	0.95948	24.258	3	0	Median	1076700000	509090000	567610000	69541000	35350000	34191000	239600000	119040000	120560000	407150000	174280000	232870000	360410000	180420000	179990000	31134	2076	29464	192891;192892;192893;192894;192895;192896;192897;192898;192899;192900	260983;260984;260985;260986;260987;260988;260989;260990;260991;260992;260993;260994;260995;260996;260997;260998	260983			16	
LIDWSALMDK	1	Unmodified	1190.6005	0.60054547	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	87.899	87.487	2	6.2147E-05	77083	160511_QHF_FH_JSI9i_2	101.11	86.439			1.0376	1.0385	15.609	5	1	Median	1.2311	1.0385	NaN	1	0	Median	1.1416	1.406	NaN	1	0	Median	1.0122	0.94111	NaN	1	0	Median	1.0182	1.0722	9.1221	2	1	Median	369370000	162210000	207160000	49760000	19946000	29814000	70925000	36728000	34197000	94640000	42210000	52430000	154050000	63329000	90716000	31135	2732	29465	192901;192902;192903;192904;192905	260999;261000;261001;261002;261003;261004	261001			6	
LIDWSALMDKK	2	Unmodified	1318.6955	0.69550848	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			77.504	76.095	3	0.0026855	63865	160511_QHF_FH_JSI10i_3	54.7	45.267			0.59252	0.58033	31.592	2	2	Median	0.56097	0.46415	NaN	1	1	Median	0.62584	0.72559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36187000	23976000	12210000	23359000	15849000	7509900	12828000	8127800	4700500	0	0	0	0	0	0	31136	2732	29466	192906;192907	261005;261006	261005			2	
LIEAEDNMNCQMSNITVTYR	0	Unmodified	2401.0712	0.071215747	2003	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.685	68.081	3	2.4851E-09	62026	160511_QHF_FH_JSI12i_1	107.33	98.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18436000	0	18436000	0	0	0	0	0	0	0	0	0	18436000	0	18436000	31137	2003	29467	192908	261007	261007			1	
LIEAVDNMLSNK	1	Unmodified	1345.6912	0.69115139	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.058	63.524	2	0.00020166	55377	160511_QHF_FH_JSI11i_2	96.171	63.279			0.10591	0.1054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10591	0.1054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31950000	26129000	5820200	0	0	0	0	0	0	31950000	26129000	5820200	0	0	0	31138	4664	29468	192909	261008	261008			1	
LIEDFLAR	0	Unmodified	975.53893	0.53893149	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	61.01	60.079	2	0.0071149	52798	160511_QHF_FH_JSI9i_2	60.508	38.377			1.1006	1.1333	2.8967	3	0	Plateau	1.3961	1.1941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1006	1.1271	NaN	1	0	Median	1.0565	1.1642	NaN	1	0	Median	639750000	337420000	302330000	137520000	58385000	79131000	0	0	0	281220000	141220000	140000000	221010000	137820000	83195000	31139	347	29469	192910;192911;192912	261009;261010;261011	261010			3	
LIEDKPR	1	Unmodified	869.49707	0.49706667	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	3	4	8.8312	8.5432	2;3	0.0055177	5958	160511_QHF_FH_JSI12i_3	65.038	17.971			1.0858	1.075	8.9312	10	0	Median	1.224	1.0537	9.9295	2	0	Median	0.83214	1.0123	NaN	1	0	Median	1.0953	1.0913	2.974	3	0	Plateau	0.94603	1.0005	12.284	4	0	Median	6226300000	2848100000	3378200000	760970000	371840000	389130000	717390000	384680000	332710000	2027300000	891430000	1135900000	2720600000	1200100000	1520500000	31140	2378	29470	192913;192914;192915;192916;192917;192918;192919;192920;192921;192922	261012;261013;261014;261015;261016;261017;261018;261019;261020;261021;261022;261023;261024;261025;261026	261025			15	
LIEDKPR	1	Acetyl (K)	911.50763	0.50763136	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		29.815	20.835	2	0.046585	13413	160513_QHF_FH_JSI11Kac_4	61.357	16.95			0.53837	0.53455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53837	0.53455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22639000	14990000	7649100	0	0	0	0	0	0	22639000	14990000	7649100	0	0	0	31141	2378	29470	192923	261027	261027			1	
LIEDNEYTAR	0	Unmodified	1222.583	0.58298115	884;845	P06241;P06239;P07947	FYN;LCK;YES1	Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Lck;Tyrosine-protein kinase Yes	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.473	24.91	2	6.2473E-11	22187	160511_QHF_FH_JSI12i_1	145.72	129.84			0.90176	0.93008	6.9236	4	0	Median	1.1115	0.89948	NaN	1	0	Median	0.82589	0.98436	NaN	1	0	Median	0.87104	0.84447	NaN	1	0	Median	0.93356	0.96171	NaN	1	0	Median	872630000	485570000	387060000	180740000	88850000	91885000	226290000	124590000	101690000	273890000	163160000	110720000	191720000	108960000	82755000	31142	845;884	29471	192924;192925;192926;192927	261028;261029;261030;261031;261032;261033;261034	261030			7	
LIEDTEDWRPR	0	Unmodified	1428.6997	0.69974224	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			41.266	40.3	3	0.0026751	35466	160511_QHF_FH_JSI10i_2	53.013	42.107			1.9066	2.295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9066	2.295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117250000	37568000	79682000	0	0	0	117250000	37568000	79682000	0	0	0	0	0	0	31143	4108	29472	192928	261035	261035			1	
LIEEAWSPPAEGEHSLEGEVHYSAEK	1	Unmodified	2893.3406	0.3406322	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	64.611	64.13	4	1.0494E-10	55284	160511_QHF_FH_JSI12i_3	83.701	77.268			1.2359	1.2417	26.532	6	1	Median	1.5336	1.3378	NaN	1	0	Median	0.95165	1.1524	NaN	1	0	Median	1.2359	1.1946	17.412	2	0	Median	0.98765	1.0103	51.23	2	1	Median	395990000	189830000	206160000	41980000	17341000	24640000	55513000	32569000	22944000	120060000	49195000	70865000	178440000	90725000	87712000	31144	2592	29473	192929;192930;192931;192932;192933;192934	261036;261037;261038;261039;261040	261039			5	
LIEEENMLAPSLK	1	Unmodified	1485.7749	0.77488102	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		66.305	65.776	2	0.00060615	59753	160511_QHF_FH_JSI11i_1	86.463	49.906			0.90701	0.82638	57.416	4	3	Median	0.84963	0.71784	NaN	1	0	Median	0.51774	0.60126	92.097	2	2	Median	0.96827	0.95133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132220000	65978000	66246000	30203000	11595000	18608000	60461000	33592000	26869000	41560000	20791000	20769000	0	0	0	31145	5281	29474	192935;192936;192937;192938	261041;261042;261043;261044	261041			3	
LIEEETAR	0	Unmodified	959.49238	0.49237523	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.313	13.883	2	0.011381	11614	160511_QHF_FH_JSI12i_1	53.878	28.141			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31146	5065	29475	192939	261045	261045			1	
LIEESQRK	1	Unmodified	1001.5506	0.55055881	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	6.2656	6.0296	2	0.0028575	3896	160511_QHF_FH_JSI9i_2	77.282	34.159			0.80986	0.75136	48.339	4	1	Median	1.1879	0.99997	NaN	1	0	Median	0.35461	0.42855	NaN	1	1	Median	1.2232	1.2065	NaN	1	0	Median	0.55215	0.56455	NaN	1	0	Median	494600000	277460000	217140000	72734000	31300000	41434000	57281000	34518000	22763000	65446000	27365000	38081000	299140000	184280000	114860000	31147	4686	29476	192940;192941;192942;192943	261046;261047;261048;261049;261050	261046			5	
LIEESSVDEVVVTNTVPHEVQK	1	Unmodified	2450.254	0.25404902	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	66.528	65.817	3	1.0629E-13	59471	160511_QHF_FH_JSI10i_1	122.19	105.48			0.83635	0.82348	9.3392	6	1	Median	0.89929	0.76154	NaN	1	0	Median	0.73691	0.85455	NaN	1	0	Median	0.83635	0.80716	6.2774	2	1	Median	0.8155	0.88919	14.306	2	0	Median	330340000	182240000	148100000	31046000	17556000	13490000	102850000	56977000	45873000	104600000	61806000	42793000	91844000	45901000	45943000	31148	2543	29477	192944;192945;192946;192947;192948;192949	261051;261052;261053;261054;261055;261056;261057;261058;261059;261060	261056			10	
LIEETKR	1	Unmodified	887.50763	0.50763136	2838	Q4L180	FILIP1L	Filamin A-interacting protein 1-like	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	7.6176	7.7153	3	0.0094709	5164	160511_QHF_FH_JSI12i_3	47.849	2.7672			0.61219	0.62096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61219	0.62096	NaN	1	0	Median	177740000	107190000	70557000	0	0	0	0	0	0	0	0	0	177740000	107190000	70557000	31149	2838	29478	192950	261061	261061			1	
LIEEVHAVVTVR	0	Unmodified	1363.7823	0.78234966	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		55.697	46.551	3	0.0068192	25247	160513_QHF_FH_JSI11Kac_6	49.31	40.355			2.4603	2.6787	92.715	2	2	Median	NaN	NaN	NaN	0	0	Median	4.3051	5.16	NaN	1	1	Median	1.4061	1.3906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13971000	4041200	9929500	0	0	0	7122500	944870	6177700	6848100	3096300	3751800	0	0	0	31150	1809	29479	192951;192952	261062;261063	261062			2	
LIEEVHAVVTVRDAK	1	Unmodified	1677.9414	0.94136949	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.888	46.322	3	0.0049279	38588	160511_QHF_FH_JSI10i_3	36.77	1.0132			0.69848	0.7952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69848	0.7952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169530000	85534000	84000000	0	0	0	169530000	85534000	84000000	0	0	0	0	0	0	31151	1809	29480	192953	261064	261064			1	
LIEEVMIGEDK	1	Unmodified	1274.6428	0.64280421	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	4	2	2	56.287	55.281	2	2.1941E-10	50201	160511_QHF_FH_JSI11i_1	156.12	112.87			0.93982	1.0378	32.321	11	4	Median	1.3522	1.0957	24.712	3	0	Plateau	0.89367	1.0624	26.189	4	2	Median	1.2544	1.24	47.479	2	1	Median	0.67864	0.73942	42.643	2	1	Median	4235400000	2208100000	2027400000	643380000	266960000	376420000	1421500000	769940000	651580000	974100000	464630000	509470000	1196400000	706530000	489920000	31152	2090	29481	192954;192955;192956;192957;192958;192959;192960;192961;192962;192963;192964	261065;261066;261067;261068;261069;261070;261071;261072;261073;261074;261075;261076;261077;261078;261079;261080;261081;261082;261083;261084	261066			20	
LIEEVMIGEDK	1	Oxidation (M)	1290.6377	0.63771883	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.947	47.266	2	8.4373E-07	42981	160511_QHF_FH_JSI12i_1	113.93	79.674			0.87496	0.8695	17.415	4	3	Median	0.99469	0.83202	NaN	1	1	Median	0.76964	0.90868	NaN	1	1	Median	1.1167	1.1009	NaN	1	1	Median	0.7067	0.72665	NaN	1	0	Median	440970000	241490000	199480000	78512000	37305000	41206000	143640000	87150000	56491000	101240000	52629000	48607000	117580000	64408000	53175000	31153	2090	29481	192965;192966;192967;192968	261085;261086;261087;261088;261089	261087		1752	5	
LIEFLSK	1	Unmodified	848.50076	0.50075507	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		56.81	56.108	2	0.056861	48694	160511_QHF_FH_JSI11i_2	46.426	22.454			0.89154	0.98271	167.39	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5925	3.2098	NaN	1	1	Median	0.30659	0.30087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	148150000	85327000	62822000	0	0	0	66893000	32960000	33933000	81256000	52368000	28888000	0	0	0	31154	5561	29482	192969;192970	261090;261091	261090			2	
LIEGLPEK	1	Unmodified	897.51713	0.51713341	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		37.893	37.61	2	0.038684	33860	160511_QHF_FH_JSI11i_1	48.283	14.486			1.3486	1.3032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3486	1.3032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	212090000	97729000	114360000	0	0	0	0	0	0	212090000	97729000	114360000	0	0	0	31155	4558	29483	192971	261092	261092			1	
LIEGLSHEVIVSAACGR	0	Unmodified	1809.9407	0.94071757	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.75	0.433		2	6								1	4	3	59.339	59.067	2;3	9.4998E-11	52409	160511_QHF_FH_JSI11i_3	171.29	146.43			0.88512	0.85943	51.247	8	5	Median	NaN	NaN	NaN	0	0	Median	0.63547	0.78947	NaN	1	0	Median	0.80927	0.78668	17.174	4	2	Median	1.1325	1.1577	71.546	3	3	Median	854070000	431140000	422930000	0	0	0	110060000	64992000	45071000	392740000	203600000	189130000	351270000	162540000	188720000	31156	5200	29484	192972;192973;192974;192975;192976;192977;192978;192979	261093;261094;261095;261096;261097;261098;261099;261100;261101;261102	261096			9	
LIEIENFK	1	Unmodified	1004.5542	0.5542472	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	57.073	56.407	2	0.0012187	48723	160511_QHF_FH_JSI11i_2	100.45	10.901			1.0828	1.076	31.489	4	1	Median	NaN	NaN	NaN	0	0	Median	0.66215	0.78679	NaN	1	0	Median	1.0828	1.076	15.276	2	0	Median	1.4589	1.643	NaN	1	1	Median	396430000	216050000	180380000	0	0	0	53516000	32582000	20935000	227960000	129060000	98903000	114950000	54414000	60540000	31157	2560	29485	192980;192981;192982;192983	261103;261104;261105;261106	261106			4	
LIEILSEK	1	Unmodified	943.559	0.55899823	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	53.156	52.1	2	0.014866	44768	160511_QHF_FH_JSI12i_2	60.436	21.645			0.40893	0.43825	20.758	4	4	Median	NaN	NaN	NaN	0	0	Median	0.50221	0.62567	NaN	1	1	Median	0.4279	0.44355	NaN	1	1	Median	0.36727	0.40926	7.9777	2	2	Median	1607100000	1388400000	218750000	0	0	0	385370000	338050000	47320000	675640000	594020000	81624000	546120000	456310000	89810000	31158	5213	29486	192984;192985;192986;192987	261107;261108;261109;261110	261108			4	
LIEKLDIK	2	Acetyl (K)	1012.6168	0.61684746	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			66.482	55.795	2	0.05556	30233	160513_QHF_FH_JSI10Kac_4	53.327	20.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6903400	0	6903400	0	0	0	6903400	0	6903400	0	0	0	0	0	0	31159	1033	29487	192988	261111	261111	854		1	
LIELHSPDSR	0	Unmodified	1165.6091	0.60913632	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	27.731	27.701	2;3	0.0017911	23805	160511_QHF_FH_JSI11i_3	43.604	37.738			1.0456	1.0846	30.723	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91208	0.86359	NaN	1	0	Median	1.2819	1.3117	26.889	2	2	Median	176210000	85776000	90431000	0	0	0	0	0	0	54095000	25838000	28257000	122110000	59938000	62175000	31160	2407	29488	192989;192990;192991;192992;192993	261112;261113;261114;261115;261116;261117	261113			6	
LIELQAGK	1	Unmodified	870.51747	0.51746776	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	32.25	31.433	2	0.0025229	26752	160511_QHF_FH_JSI12i_2	79.451	2.6044			1.0148	0.8894	58.24	5	3	Median	1.0148	0.8894	NaN	1	0	Median	0.51897	0.64743	NaN	1	1	Median	1.1415	1.1479	104.56	2	2	Median	1.0188	1.173	NaN	1	0	Median	794550000	380560000	413990000	125950000	61810000	64142000	108320000	55101000	53221000	426950000	203010000	223940000	133330000	60636000	72695000	31161	1050	29489	192994;192995;192996;192997;192998	261118;261119;261120;261121;261122	261118			5	
LIELQAGKK	2	Unmodified	998.61243	0.61243078	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.26		6	11						4	6	5	6	4	23.99	21.747	2;3	1.7469E-05	18052	160511_QHF_FH_JSI11i_3	128.69	41.733			1.4479	1.3558	113.32	20	17	Median	0.8926	0.74275	115.54	6	5	Median	2.1099	2.604	114.1	5	4	Median	2.0237	1.971	107.46	5	5	Median	0.52064	0.54833	139.81	4	3	Median	8613300000	4163600000	4449700000	647510000	296680000	350830000	1152400000	541980000	610470000	1827600000	764470000	1063200000	4985700000	2560500000	2425300000	31162	1050	29490	192999;193000;193001;193002;193003;193004;193005;193006;193007;193008;193009;193010;193011;193012;193013;193014;193015;193016;193017;193018;193019	261123;261124;261125;261126;261127;261128;261129;261130;261131;261132;261133;261134;261135;261136;261137;261138;261139;261140;261141;261142;261143;261144;261145;261146;261147;261148	261124			26	
LIENVDPEK	1	Unmodified	1055.5499	0.5498901	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		29.426	29.154	2	0.0027755	25994	160511_QHF_FH_JSI10i_1	63.216	36.254			0.92256	0.97339	13.002	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74817	0.88789	NaN	1	0	Median	1.1376	1.0671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123090000	66483000	56606000	0	0	0	59281000	34628000	24652000	63808000	31855000	31954000	0	0	0	31163	4311	29491	193020;193021	261149;261150	261150			2	
LIEPFFNK	1	Unmodified	1006.5488	0.54876789	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	64.985	64.084	2	0.001102	55219	160511_QHF_FH_JSI12i_2	94.006	47.343			1.0544	1.1254	10.869	4	0	Median	1.1236	0.95617	NaN	1	0	Median	0.98017	1.2083	NaN	1	0	Median	1.1873	1.1885	NaN	1	0	Median	0.98952	1.0657	NaN	1	0	Median	199060000	100740000	98318000	35588000	15658000	19931000	47179000	25754000	21424000	73579000	36126000	37454000	42716000	23207000	19509000	31164	695	29492	193022;193023;193024;193025	261151	261151			1	
LIEPIPDSHIR	0	Unmodified	1288.7139	0.71393574	277	O15344	MID1	E3 ubiquitin-protein ligase Midline-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	45.816	44.84	3	0.012628	39208	160511_QHF_FH_JSI9i_2	35.006	31.243			0.9598	0.99619	5.2382	4	0	Median	1.0693	0.90297	NaN	1	0	Median	0.81232	0.99005	NaN	1	0	Median	1.0087	1.0024	NaN	1	0	Median	0.91327	1.0114	NaN	1	0	Median	319000000	153910000	165090000	53744000	23732000	30012000	85297000	39123000	46175000	102180000	48341000	53840000	77777000	42710000	35066000	31165	277	29493	193026;193027;193028;193029	261152;261153;261154	261152			1	
LIEQAPIQMGEEAVR	0	Unmodified	1682.8662	0.86615564	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.149	62.298	2	0.0010512	55229	160511_QHF_FH_JSI10i_2	78.908	53.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9780300	9780300	0	0	0	0	9780300	9780300	0	0	0	0	0	0	0	31166	2977	29494	193030	261155	261155			1	
LIEQEEYLNVQVK	1	Unmodified	1603.8457	0.84573777	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	61.828	61.178	2	5.0957E-07	55684	160511_QHF_FH_JSI12i_1	94.363	57.019			0.77804	0.78047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77804	0.78047	NaN	1	1	Median	27325000	13341000	13984000	0	0	0	0	0	0	0	0	0	27325000	13341000	13984000	31167	4989	29495	193031;193032	261156;261157	261157			2	
LIEQIHPSK	1	Unmodified	1063.6026	0.60259438	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	19.971	19.514	3	0.0081588	15879	160511_QHF_FH_JSI12i_3	39.179	32.051			2.3737	2.2187	123.69	2	1	Median	6.1948	5.3204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90953	0.92525	NaN	1	0	Median	79688000	30223000	49465000	28683000	4636600	24046000	0	0	0	0	0	0	51005000	25586000	25419000	31168	5460	29496	193033;193034	261158;261159	261159			2	
LIEQYALREEHIDK	1	Unmodified	1755.9155	0.91554867	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	39.568	39.47	3;4	0.0055215	34584	160511_QHF_FH_JSI11i_3	45.434	28.356			0.81778	0.76533	55.829	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81778	0.76533	26.288	2	1	Median	0.888	0.90658	91.503	2	1	Median	263880000	144380000	119500000	0	0	0	0	0	0	187170000	99890000	87280000	76710000	44487000	32223000	31169	5011	29497	193035;193036;193037;193038	261160;261161;261162	261160			3	
LIEQYELR	0	Unmodified	1062.571	0.5709599	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	36.451	35.257	2	0.022268	30668	160511_QHF_FH_JSI9i_2	44.117	1.5182			0.75531	0.75186	8.9571	2	0	Median	0.80313	0.70572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71034	0.80102	NaN	1	0	Median	281920000	151340000	130580000	130720000	65141000	65580000	0	0	0	0	0	0	151200000	86199000	64999000	31170	1493	29498	193039;193040	261163	261163			1	
LIESLFTIQK	1	Unmodified	1190.6911	0.69107503	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		74.982	74.349	2	0.0022309	65310	160511_QHF_FH_JSI11i_2	74.173	49.354			0.3456	0.34204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3456	0.34204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101580000	82423000	19159000	0	0	0	0	0	0	101580000	82423000	19159000	0	0	0	31171	2305	29499	193041	261164	261164			1	
LIETGERER	0	Unmodified	1101.5778	0.57783619	4893	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		8.9797	8.597	2	0.0045829	6395	160511_QHF_FH_JSI9i_2	97.635	45.781			0.88729	0.76577	37.335	3	3	Plateau	0.91674	0.76577	NaN	1	1	Median	0.85683	1.0512	NaN	1	1	Median	0.47492	0.49955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165480000	97370000	68105000	63992000	35617000	28374000	62058000	33769000	28289000	39425000	27984000	11441000	0	0	0	31172	4893	29500	193042;193043;193044	261165;261166;261167	261165			3	
LIETTANMNSSYVK	1	Unmodified	1569.7709	0.77085827	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		44.036	43.638	2	0.00042523	39177	160511_QHF_FH_JSI10i_1	97.163	52.845			1.4747	1.5472	13.859	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2317	1.4028	NaN	1	1	Median	1.7658	1.7065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49878000	21434000	28444000	0	0	0	21313000	10767000	10546000	28565000	10667000	17898000	0	0	0	31173	1581	29501	193045;193046;193047	261168;261169;261170	261169			3	
LIEVDDERK	1	Unmodified	1115.5823	0.58225287	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.94	8	6	9				4	7		7	8	8	11	20.739	17.347	2;3	7.7974E-23	14398	160511_QHF_FH_JSI12i_3	175.51	109.44			0.9334	1.0098	38.523	33	10	Median	1.1884	0.98699	42.29	7	3	Median	0.92639	1.1125	35.467	7	2	Median	1.0085	1.0359	31.026	8	1	Median	0.89874	0.96639	44.518	11	4	Median	16994000000	8512000000	8482300000	2849000000	1242400000	1606600000	1384400000	688990000	695410000	6089200000	3218000000	2871100000	6671700000	3362600000	3309100000	31174	2018	29502	193048;193049;193050;193051;193052;193053;193054;193055;193056;193057;193058;193059;193060;193061;193062;193063;193064;193065;193066;193067;193068;193069;193070;193071;193072;193073;193074;193075;193076;193077;193078;193079;193080;193081	261171;261172;261173;261174;261175;261176;261177;261178;261179;261180;261181;261182;261183;261184;261185;261186;261187;261188;261189;261190;261191;261192;261193;261194;261195;261196;261197;261198;261199;261200;261201;261202;261203;261204;261205;261206;261207;261208;261209;261210;261211;261212;261213;261214;261215	261214			45	
LIEVQSNSLHK	1	Unmodified	1266.6932	0.6932003	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	27.9	27.476	2;3	1.1095E-13	23544	160511_QHF_FH_JSI11i_3	131.12	109.27			1.1155	1.1171	54.118	7	1	Median	0.67761	0.57576	NaN	1	0	Median	0.43849	0.53638	25.939	2	1	Median	1.5524	1.4438	6.8405	2	0	Median	1.4015	1.4158	33.504	2	0	Median	929680000	466940000	462740000	159170000	92515000	66657000	187030000	125580000	61442000	295900000	129640000	166260000	287590000	119210000	168380000	31175	3248	29503	193082;193083;193084;193085;193086;193087;193088	261216;261217;261218;261219;261220;261221;261222;261223	261217			8	
LIEWLPLHLPR	0	Unmodified	1385.8183	0.81834123	3062	Q6JQN1	ACAD10	Acyl-CoA dehydrogenase family member 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	95.018	94.569	3	0.00024439	81221	160511_QHF_FH_JSI12i_3	66.595	62.626			1.0797	0.97946	11.693	4	2	Median	1.0182	0.92301	9.0256	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0527	0.97511	NaN	1	0	Median	1.1079	1.1515	NaN	1	0	Median	38092000	20182000	17910000	5722200	2529800	3192400	0	0	0	14846000	7382600	7463700	17523000	10270000	7253600	31176	3062	29504	193089;193090;193091;193092	261224;261225;261226;261227;261228;261229	261229			6	
LIEYYQQLAQK	1	Unmodified	1395.7398	0.73981614	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.3	2	4						3		2	2	4	1	58.257	53.661	2	1.3201E-07	47017	160511_QHF_FH_JSI9i_2	124.23	91.39			0.99473	1.1347	53.304	7	5	Median	1.3795	1.1626	NaN	1	0	Median	0.63107	0.74606	59.304	2	2	Median	0.8955	0.90178	41.644	3	2	Plateau	2.2418	2.546	NaN	1	1	Median	329630000	181060000	148580000	50608000	21722000	28886000	93935000	64982000	28953000	132600000	74174000	58422000	52495000	20181000	32314000	31177	5348	29505	193093;193094;193095;193096;193097;193098;193099;193100;193101	261230;261231;261232;261233;261234;261235;261236;261237;261238	261234			9	
LIFAGKQLEDGR	1	Acetyl (K)	1387.746	0.74596415	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3	1	2	2	1	71.842	62.087	2;3	5.2798E-19	31057	160513_QHF_FH_JSI10Kac_5	156.12	125.87			1.0065	0.91778	47.714	6	1	Median	1.0708	0.92808	NaN	1	0	Median	1.0927	1.2961	1.9321	2	0	Median	0.59598	0.57636	64.214	2	1	Median	0.62757	0.66333	NaN	1	0	Median	212600000	137710000	74892000	12000000	6022300	5977500	81936000	44075000	37862000	97886000	73866000	24020000	20777000	13744000	7033200	31178	2042	29506	193102;193103;193104;193105;193106;193107	261239;261240;261241;261242;261243;261244;261245;261246;261247	261244	2106		9	
LIFAGKQLEDGR	1	Unmodified	1345.7354	0.73539946	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1	By MS/MS				3	0			1							1				45.886	44.276	3	0.029808	36238	160511_QHF_FH_JSI9i_3	32.295	24.191			1.5884	1.2562	NaN	1	0	Median	1.5884	1.2562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30185000	12263000	17922000	30185000	12263000	17922000	0	0	0	0	0	0	0	0	0	31179	2042	29506	193108	261248	261248			1	
LIFAKPINSK	2	Acetyl (K)	1171.6965	0.69649476	3065	Q6MZP7	LIN54	Protein lin-54 homolog	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.799							3	4	5	2	3	4	3	71.425	61.452	2	0.0033603	32015	160513_QHF_FH_JSI12Kac_6	75.294	25.481			1.0383	1.0534	63.641	11	2	Median	1.0727	0.89418	3.4294	2	0	Median	0.91136	1.1043	90.883	3	1	Median	0.93974	0.86116	92.91	3	1	Median	1.0383	1.0902	10.507	3	0	Median	141190000	66289000	74898000	20161000	8955300	11206000	27449000	8786700	18662000	43345000	21687000	21658000	50232000	26860000	23372000	31180	3065	29507	193109;193110;193111;193112;193113;193114;193115;193116;193117;193118;193119;193120	261249;261250;261251;261252;261253;261254;261255;261256;261257;261258;261259;261260;261261;261262;261263;261264	261262	2756		16	
LIFDNLK	1	Unmodified	861.496	0.49600404	821;1032;1828;2467	P05023;P20648;P13637;P54707;Q13733	ATP1A1;ATP4A;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	57.337	56.574	2	0.019031	49540	160511_QHF_FH_JSI9i_2	58.981	25.243			0.72495	0.66084	50.006	7	3	Median	0.72495	0.61974	NaN	1	0	Median	0.54494	0.66084	NaN	1	0	Median	0.67955	0.66579	8.736	2	1	Median	1.0191	1.0262	76.492	3	2	Median	1478400000	834590000	643830000	175800000	101410000	74388000	242520000	144940000	97574000	529060000	303530000	225530000	531040000	284710000	246330000	31181	821;1032;1828;2467	29508	193121;193122;193123;193124;193125;193126;193127	261265;261266;261267;261268;261269;261270;261271	261268			7	
LIFDNLKK	2	Unmodified	989.59097	0.59096706	821;1032;1828;2467	P05023;P20648;P13637;P54707;Q13733	ATP1A1;ATP4A;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							3	5	3	2	44.904	44.088	2;3	0.00014688	37355	160511_QHF_FH_JSI12i_3	93.374	48.292			0.88463	0.76689	56.936	12	4	Median	0.90251	0.75531	2.1617	3	0	Median	0.67536	0.78158	63.077	4	1	Median	0.56373	0.53109	104.38	3	3	Median	0.89716	0.91446	1.4678	2	0	Median	5479600000	2642000000	2837600000	1188000000	518170000	669840000	1242200000	653580000	588590000	1371300000	578470000	792840000	1678100000	891770000	786350000	31182	821;1032;1828;2467	29509	193128;193129;193130;193131;193132;193133;193134;193135;193136;193137;193138;193139;193140	261272;261273;261274;261275;261276;261277;261278;261279;261280;261281;261282;261283;261284;261285;261286;261287;261288;261289	261286			18	
LIFEKFSGK	2	Acetyl (K)	1109.6121	0.61209643	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		76.497	66.355	2	0.00062997	36158	160513_QHF_FH_JSI11Kac_6	96.948	63.397			0.36645	0.35088	105.56	3	0	Median	NaN	NaN	NaN	0	0	Median	1.7408	2.0469	NaN	1	0	Median	0.34019	0.32991	8.7114	2	0	Median	NaN	NaN	NaN	0	0	Median	79263000	49530000	29733000	0	0	0	1696500	785830	910660	77566000	48744000	28822000	0	0	0	31183	2094	29510	193141;193142;193143	261290;261291	261290	2200		2	
LIFFGGYGYLPEDK	1	Unmodified	1617.8079	0.80789571	5539	Q9Y2U9	KLHDC2	Kelch domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		88.43	79.1	2	0.0004324	44179	160513_QHF_FH_JSI11Kac_6	122.42	97.567			0.60475	0.55489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60475	0.55489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57956000	34809000	23147000	0	0	0	0	0	0	57956000	34809000	23147000	0	0	0	31184	5539	29511	193144	261292	261292			1	
LIFFYEWSVK	1	Unmodified	1330.6962	0.69616041	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	95.284	87.477	2	1.9323E-06	44572	160513_QHF_FH_JSI12Kac_6	124.23	111.19			0.85305	0.90386	8.4638	5	1	Median	1.0673	0.90386	NaN	1	0	Median	0.75784	0.89245	12.196	2	1	Median	0.85305	0.80587	NaN	1	0	Median	0.90721	0.94603	NaN	1	0	Median	4864500000	2270400000	2594000000	1173300000	548440000	624890000	2078200000	963130000	1115000000	896420000	402270000	494150000	716550000	356580000	359960000	31185	694	29512	193145;193146;193147;193148;193149	261293;261294;261295;261296;261297;261298;261299;261300;261301	261298			9	
LIFHLVK	1	Unmodified	868.55346	0.55345934	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	4	2	4	54.54	50.989	3	0.0038308	44406	160511_QHF_FH_JSI11i_3	62.714	30.244			1.0783	1.1682	72.529	12	11	Median	1.6179	1.3337	77.99	3	3	Median	0.92972	1.0629	78.582	4	4	Median	1.1569	1.0612	124.43	2	2	Median	0.94903	1.0232	76.428	3	2	Median	368230000	175680000	192550000	87909000	40160000	47748000	105720000	56414000	49308000	60917000	29019000	31898000	113680000	50085000	63597000	31186	2420	29513	193150;193151;193152;193153;193154;193155;193156;193157;193158;193159;193160;193161;193162	261302;261303;261304;261305;261306;261307;261308;261309;261310;261311;261312;261313;261314;261315;261316;261317	261302			16	
LIFIVDVWHPELTPQQR	0	Unmodified	2090.1313	0.13129553	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	3	1	93.653	85.622	2;3	2.0233E-83	48377	160513_QHF_FH_JSI10Kac_6	271.6	241.16			1.152	1.1439	59.973	9	2	Median	1.7757	1.502	10.967	2	0	Median	0.92901	1.1003	39.9	3	1	Plateau	1.196	1.1439	103.04	3	1	Median	1.152	1.2218	NaN	1	0	Median	3647800000	1558500000	2089400000	882660000	282260000	600400000	1602900000	808570000	794330000	793320000	297070000	496250000	368960000	170570000	198390000	31187	2307	29514	193163;193164;193165;193166;193167;193168;193169;193170;193171	261318;261319;261320;261321;261322;261323;261324;261325;261326;261327;261328;261329;261330;261331;261332	261330			15	
LIFLNFVR	0	Unmodified	1020.612	0.61203685	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.007	78.734	2	0.0005764	45007	160513_QHF_FH_JSI10Kac_6	110.34	32.963			0.92448	0.939	16.322	4	0	Median	1.3329	1.1603	NaN	1	0	Median	0.6691	0.80046	NaN	1	0	Median	1.0504	1.009	NaN	1	0	Median	0.81368	0.87386	NaN	1	0	Median	435570000	231210000	204360000	82846000	37772000	45074000	155090000	88905000	66185000	107160000	57803000	49353000	90475000	46726000	43748000	31188	3509	29515	193172;193173;193174;193175	261333;261334;261335;261336;261337;261338	261338			6	
LIFLQNVIK	1	Unmodified	1086.6801	0.68011642	5385	Q9UL03	INTS6	Integrator complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	84.716	84.053	2	0.016494	72833	160511_QHF_FH_JSI12i_3	43.124	39.011			1.0743	0.9616	39.546	4	2	Linear	1.4648	1.2017	NaN	1	0	Median	2.231	2.6271	NaN	1	1	Median	1.9176	1.829	NaN	1	1	Median	1.0805	1.126	NaN	1	0	Median	107930000	44437000	63489000	20739000	8879500	11860000	17096000	6295300	10800000	29664000	11000000	18664000	40427000	18262000	22165000	31189	5385	29516	193176;193177;193178;193179	261339;261340;261341;261342;261343	261342			4	
LIFPERIDPNPADSQK	1	Unmodified	1838.9527	0.95266246	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.44	62.937	3	0.00050752	52630	160511_QHF_FH_JSI10i_3	53.777	42.923			1.3363	1.2906	19.388	2	1	Median	1.8331	1.4802	NaN	1	1	Median	0.97417	1.1252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84216000	33063000	51154000	18050000	4086400	13964000	66166000	28976000	37190000	0	0	0	0	0	0	31190	554	29517	193180;193181	261344;261345;261346;261347	261344			4	
LIFPYVELDLHSYDLGIENR	0	Unmodified	2405.2267	0.22671206	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	94.607	86.548	3	9.0303E-14	48408	160513_QHF_FH_JSI9Kac_6	128.38	107.73			1.2406	1.0877	33.137	3	1	Plateau	1.2879	1.0877	NaN	1	0	Median	0.53028	0.61972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0716	1.1121	NaN	1	0	Median	349280000	173360000	175910000	126550000	56231000	70322000	105440000	67609000	37829000	0	0	0	117290000	49524000	67762000	31191	576	29518	193182;193183;193184	261348;261349	261348			2	
LIFPYVELDLHSYDLGIENRDATNDQVTK	1	Unmodified	3377.678	0.67795075	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.16	101.17	4	3.0726E-27	87783	160511_QHF_FH_JSI12i_3	129.61	106.38			1.0091	1.0333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	1.0333	NaN	1	0	Median	301270000	143520000	157740000	0	0	0	0	0	0	0	0	0	301270000	143520000	157740000	31192	576	29519	193185	261350;261351	261350			2	
LIFQEGKPVTEK	2	Unmodified	1387.7711	0.77111627	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	37.707	37.364	2;3	4.7163E-05	31685	160511_QHF_FH_JSI12i_3	87.719	50.738			0.95304	0.9392	48.296	4	2	Median	0.55009	0.47238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89905	0.85518	NaN	1	0	Median	1.2109	1.2455	26.66	2	1	Median	583030000	270730000	312290000	29993000	17921000	12072000	0	0	0	188820000	89724000	99091000	364220000	163090000	201130000	31193	1718	29520	193186;193187;193188;193189	261352;261353;261354;261355;261356;261357	261355			6	
LIFQMPQNK	1	Oxidation (M)	1133.5903	0.59031513	1600;3340;2445	P46940;Q13576;Q86VI3	IQGAP1;IQGAP2;IQGAP3	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2;Ras GTPase-activating-like protein IQGAP3	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	37.867	36.946	2	0.00019694	32318	160511_QHF_FH_JSI11i_3	91.041	76.834			1.2875	1.3436	42.683	5	3	Median	1.8647	1.5515	NaN	1	1	Median	0.7881	0.91159	67.557	2	2	Median	0.97352	0.89232	NaN	1	0	Median	1.3164	1.3436	NaN	1	0	Median	292660000	133780000	158880000	19523000	7732900	11790000	59445000	31302000	28142000	71700000	35468000	36232000	142000000	59282000	82716000	31194	1600;2445;3340	29521	193190;193191;193192;193193;193194	261358;261359;261360;261361;261362;261363	261358		1274	6	
LIFQMPQNK	1	Unmodified	1117.5954	0.59540051	1600;3340;2445	P46940;Q13576;Q86VI3	IQGAP1;IQGAP2;IQGAP3	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2;Ras GTPase-activating-like protein IQGAP3	no	no	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		4								1	1		2	54.313	53.17	2	0.00023517	49740	160511_QHF_FH_JSI12i_2	99.375	87.168			0.8336	0.88638	13.193	4	1	Median	0.93411	0.7726	NaN	1	0	Median	0.77446	0.95497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81364	0.92011	15.823	2	1	Median	1437300000	803270000	634040000	421660000	206650000	215010000	439830000	227880000	211950000	0	0	0	575830000	368750000	207080000	31195	1600;2445;3340	29521	193195;193196;193197;193198	261364;261365;261366	261365			3	
LIFTDGSR	0	Unmodified	907.47633	0.47633123	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.64	4	3	2				2	4	2	5	5	4	3	39.584	34.457	2	0.00024028	29387	160511_QHF_FH_JSI11i_2	117.17	44.13			1.08	1.1534	18.727	17	1	Median	1.5287	1.2859	31.434	5	1	Median	0.98604	1.1785	13.948	5	0	Median	1.1603	1.1626	4.6663	4	0	Linear	1.0429	1.122	14.918	3	0	Median	3020000000	1364300000	1655700000	623270000	274470000	348800000	1101100000	559770000	541320000	1138200000	460520000	677650000	157440000	69499000	87943000	31196	1460	29522	193199;193200;193201;193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212;193213;193214;193215	261367;261368;261369;261370;261371;261372;261373;261374;261375;261376;261377;261378;261379;261380;261381	261377			15	
LIFTVGYSR	0	Unmodified	1054.5811	0.58113065	3719	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	70.491	60.907	2	0.02809	33066	160513_QHF_FH_JSI11Kac_6	45.489	21.534			1.0418	1.0395	5.9608	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0494	0.9966	NaN	1	0	Median	1.0343	1.0843	NaN	1	0	Median	102650000	47269000	55385000	0	0	0	0	0	0	51842000	23796000	28046000	50811000	23473000	27338000	31197	3719	29523	193216;193217	261382;261383	261383			2	
LIFYDLR	0	Unmodified	938.52255	0.52255314	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.54		4	3					4	4	4	4	3	4	73.148	67.63	2	6.3093E-09	36298	160513_QHF_FH_JSI11Kac_6	155.73	104.7			0.96288	0.99614	8.172	15	1	Median	1.1588	0.95877	4.943	4	0	Median	0.80618	0.94717	10.93	4	0	Median	1.0504	1.0399	12.011	3	0	Median	0.91964	1.0164	7.2206	4	1	Median	2605600000	1349600000	1256000000	547800000	251470000	296330000	686570000	365510000	321060000	836210000	443590000	392620000	535010000	288990000	246020000	31198	2614	29524	193218;193219;193220;193221;193222;193223;193224;193225;193226;193227;193228;193229;193230;193231;193232	261384;261385;261386;261387;261388;261389;261390;261391;261392;261393;261394;261395;261396;261397;261398;261399;261400;261401;261402;261403;261404;261405;261406;261407;261408;261409	261390			26	
LIFYDLRGEGVK	1	Unmodified	1408.7715	0.77145062	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	63.993	63.3	2;3	0.00011339	54681	160511_QHF_FH_JSI12i_3	89.805	78.592			1.3935	1.3729	15.901	3	2	Median	NaN	NaN	NaN	0	0	Median	1.4196	1.6568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2944	1.2877	9.0662	2	2	Median	277180000	117860000	159320000	0	0	0	57521000	18452000	39069000	0	0	0	219660000	99408000	120250000	31199	2614	29525	193233;193234;193235	261410;261411;261412	261412			3	
LIGDAAK	1	Unmodified	686.39629	0.39629	985;954;982;1827;1416	P11021;P0DMV9;P0DMV8;P11142;P54652;P34931	HSPA5;HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA1L	78 kDa glucose-regulated protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	5.71	4	4	3		1	3	4			3	6	5	5	12.453	9.2154	2	0.015772	5876	160513_QHF_FH_JSI12Kac_3	74.415	23.449			0.93183	1.0369	43.813	18	3	Median	1.6719	1.5347	83.432	2	1	Median	0.82441	0.9472	15.853	6	0	Median	1.0783	1.0724	41.275	5	1	Median	0.97437	1.0624	54.495	5	1	Median	78291000000	35726000000	42565000000	16533000000	6367500000	10166000000	21319000000	11142000000	10177000000	22330000000	10014000000	12316000000	18109000000	8202400000	9906100000	31200	982;954;985;1827;1416	29526	193236;193237;193238;193239;193240;193241;193242;193243;193244;193245;193246;193247;193248;193249;193250;193251;193252;193253;193254	261413;261414;261415;261416;261417;261418;261419;261420;261421;261422;261423;261424;261425;261426;261427;261428;261429;261430;261431;261432	261429			20	
LIGDRPNTYIYTK	1	Unmodified	1552.8249	0.82494275	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		42.72	41.681	3	0.00095882	34721	160511_QHF_FH_JSI10i_3	57.136	44.509			0.85534	1.0881	25.371	3	0	Plateau	0.85534	0.70128	NaN	1	0	Median	0.95759	1.0884	NaN	1	0	Median	1.1674	1.0881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	329860000	143930000	185920000	116600000	60750000	55846000	109110000	42724000	66391000	104140000	40458000	63686000	0	0	0	31201	3790	29527	193255;193256;193257	261433;261434;261435	261433			3	
LIGELAK	1	Unmodified	742.45889	0.45889025	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		28.571	28.202	2	0.039266	23792	160511_QHF_FH_JSI11i_2	47.743	14.385			0.57287	0.5936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57287	0.5936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	673500000	307180000	366320000	0	0	0	0	0	0	673500000	307180000	366320000	0	0	0	31202	4289	29528	193258	261436	261436			1	
LIGEYGLR	0	Unmodified	919.51272	0.51271674	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.79	1	4	2						2	1	3	2	3	45.779	43.044	2	0.00098177	36994	160511_QHF_FH_JSI12i_3	95.62	43.932			0.96259	1.0684	12.91	8	0	Median	NaN	NaN	NaN	0	0	Median	0.88277	1.0586	12.445	3	0	Median	1.1283	1.1084	3.8952	2	0	Median	0.8398	0.89424	19.19	3	0	Plateau	15253000000	7666800000	7586200000	0	0	0	3253800000	1777400000	1476400000	7170800000	3546500000	3624300000	4828400000	2342900000	2485500000	31203	1593	29529	193259;193260;193261;193262;193263;193264;193265;193266;193267	261437;261438;261439;261440;261441;261442;261443;261444;261445;261446;261447;261448;261449;261450;261451	261449			15	
LIGHHGAEDATDAFR	0	Unmodified	1608.7645	0.76446776	5673	Q9Y5Q0	FADS3	Fatty acid desaturase 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.622	28.577	3	0.016558	23975	160511_QHF_FH_JSI12i_3	40.242	32.458			2.3634	2.3684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3634	2.3684	NaN	1	1	Median	26484000	8640300	17844000	0	0	0	0	0	0	0	0	0	26484000	8640300	17844000	31204	5673	29530	193268	261452	261452			1	
LIGIDDVPDARGDK	1	Unmodified	1482.7678	0.7678218	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		50.4	49.874	3	0.028896	43084	160511_QHF_FH_JSI11i_2	34.101	24.568			0.84357	0.87469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84357	0.87469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92010000	43648000	48362000	0	0	0	0	0	0	92010000	43648000	48362000	0	0	0	31205	2137	29531	193269	261453	261453			1	
LIGISQR	0	Unmodified	785.47594	0.4759373	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				26.658	25.303	2	0.016664	20492	160511_QHF_FH_JSI9i_3	62.715	17.742			1.5978	1.2779	NaN	1	0	Median	1.5978	1.2779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155240000	63386000	91859000	155240000	63386000	91859000	0	0	0	0	0	0	0	0	0	31206	566	29532	193270	261454	261454			1	
LIGIYKTYNITK	2	Acetyl (K)	1467.8337	0.83371653	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.247	67.929	2	0.011027	37115	160513_QHF_FH_JSI11Kac_6	80.596	45.709			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31207	4989	29533	193271	261455	261455	3292		1	
LIGLAVDYFDGGK	1	Unmodified	1366.7133	0.71326704	3089	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.985	85.994	2	0.0019005	74247	160511_QHF_FH_JSI12i_2	70.977	52.197			0.9098	1.0027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9098	1.0027	NaN	1	1	Median	19873000	11573000	8299900	0	0	0	0	0	0	0	0	0	19873000	11573000	8299900	31208	3089	29534	193272	261456	261456			1	
LIGLMNNEAAQESTR	0	Unmodified	1645.8094	0.80936904	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		48.878	48.878	2	2.3778E-07	42327	160511_QHF_FH_JSI11i_2	88.596	78.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28290000	0	28290000	0	0	0	0	0	0	28290000	0	28290000	0	0	0	31209	3379	29535	193273;193274	261457;261458	261458			2	
LIGLSATLPNYEDVATFLR	0	Unmodified	2092.1205	0.12045607	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.9	101.91	2	1.726E-99	88634	160511_QHF_FH_JSI12i_3	264.28	235.01			1.2923	1.2895	6.1436	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2794	1.2347	NaN	1	0	Median	1.3052	1.3468	NaN	1	0	Median	615690000	278560000	337130000	0	0	0	0	0	0	171850000	77499000	94354000	443840000	201060000	242780000	31210	552	29536	193275;193276	261459;261460	261460			2	
LIGNHPDVLPFALR	0	Unmodified	1560.8776	0.87764703	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		76.034	75.083	3	0.002802	63058	160511_QHF_FH_JSI10i_3	46.704	39.334			0.90096	1.035	42.703	3	1	Median	1.8761	1.5746	NaN	1	1	Median	0.90096	1.035	NaN	1	0	Median	0.70963	0.67032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88242000	36366000	51875000	33969000	8802100	25167000	28529000	13992000	14538000	25743000	13573000	12171000	0	0	0	31211	4997	29537	193277;193278;193279	261461;261462;261463;261464	261463			4	
LIGNLCYK	1	Unmodified	979.51609	0.51608756	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	40.84	39.908	2	0.0079963	34110	160511_QHF_FH_JSI12i_2	57.811	34.769			0.80514	0.65144	22.686	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80514	0.98006	NaN	1	0	Median	0.63227	0.6455	NaN	1	0	Median	0.83656	0.9275	NaN	1	0	Median	371980000	196840000	175150000	0	0	0	84900000	49205000	35695000	183000000	94289000	88711000	104080000	53341000	50740000	31212	5227	29538	193280;193281;193282	261465;261466;261467	261465			3	
LIGNMALLPIR	0	Unmodified	1209.7267	0.72674903	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	85.259	84.587	2	1.2432E-37	73297	160511_QHF_FH_JSI12i_3	198.54	165.7			0.89938	1.0269	15.696	8	0	Median	1.3349	1.1126	13.297	2	0	Median	0.87852	1.059	1.9428	2	0	Median	0.99261	0.95475	12.259	2	0	Median	0.74076	0.80174	11.588	2	0	Median	2207400000	1073100000	1134400000	453210000	176400000	276800000	428450000	237000000	191450000	607560000	302050000	305510000	718230000	357630000	360600000	31213	257	29539	193283;193284;193285;193286;193287;193288;193289;193290	261468;261469;261470;261471;261472;261473;261474;261475;261476;261477;261478;261479;261480	261480			13	
LIGNMALLPIR	0	Oxidation (M)	1225.7217	0.72166366	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			70.197	68.723	2	0.0016102	57496	160511_QHF_FH_JSI10i_3	66.351	41.214			1.2179	1.187	8.222	2	0	Median	1.5641	1.2581	NaN	1	0	Median	0.9483	1.12	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104420000	48099000	56317000	48113000	20893000	27220000	56303000	27206000	29097000	0	0	0	0	0	0	31214	257	29539	193291;193292	261481;261482	261481		107	2	
LIGPLSHSILTEAIK	1	Unmodified	1590.9345	0.9344932	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	1	1	2	79.401	78.86	3	1.7661E-35	64754	160511_QHF_FH_JSI9i_3	165.64	130			0.44212	0.41107	26.102	3	3	Median	0.62103	0.49746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44212	0.41107	NaN	1	1	Median	0.29645	0.29687	NaN	1	1	Median	537200000	291700000	245500000	153840000	79802000	74036000	0	0	0	223380000	116200000	107180000	159980000	95699000	64283000	31215	4288	29540	193293;193294;193295;193296;193297;193298;193299	261483;261484;261485;261486;261487;261488;261489	261486			7	
LIGPNCPGVINPGECK	1	Unmodified	1723.8386	0.83856068	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	52.545	52.007	2	4.8658E-05	47014	160511_QHF_FH_JSI11i_1	106.49	91.52			1.5863	1.584	41.969	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2273	1.1773	NaN	1	1	Median	2.0503	2.1313	NaN	1	1	Median	50850000	24517000	26333000	0	0	0	0	0	0	31382000	15873000	15510000	19467000	8644300	10823000	31216	1800	29541	193300;193301	261490;261491	261490			2	
LIGQLNLK	1	Unmodified	897.56475	0.56475231	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.242	47.388	2	0.021617	41705	160511_QHF_FH_JSI11i_3	44.721	18.895			0.84376	0.86208	16.776	4	0	Median	0.87226	0.69434	NaN	1	0	Median	0.7996	0.95684	NaN	1	0	Median	0.81619	0.7767	NaN	1	0	Median	0.99522	0.98439	NaN	1	0	Median	535580000	267850000	267730000	52274000	21955000	30319000	78186000	45580000	32605000	188670000	96941000	91731000	216450000	103370000	113080000	31217	3921	29542	193302;193303;193304;193305	261492;261493;261494	261492			3	
LIGSHTISK	1	Unmodified	954.54983	0.54983053	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.19			15						2	6	4	3	4	15.025	13.744	2;3	1.2015E-05	10697	160511_QHF_FH_JSI9i_3	98.048	74.018			1.4092	1.335	127.62	17	3	Median	1.9444	1.5668	116.77	6	2	Median	0.67656	0.77311	150.83	4	0	Median	3.5978	3.4451	148.04	3	0	Median	1.414	1.443	147.11	4	1	Median	9294000000	4397300000	4896700000	3027800000	1107700000	1920100000	1816400000	1106100000	710300000	2816700000	1360100000	1456600000	1633100000	823370000	809740000	31218	2947	29543	193306;193307;193308;193309;193310;193311;193312;193313;193314;193315;193316;193317;193318;193319;193320;193321;193322	261495;261496;261497;261498;261499;261500;261501;261502;261503;261504	261498			9	
LIGWGQIR	0	Unmodified	941.54469	0.54468557	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	59.829	56.191	2	0.00049775	46172	160511_QHF_FH_JSI9i_3	106.29	39.292			0.94324	0.925	12.736	12	0	Median	1.1425	0.92258	11.719	3	0	Median	0.74984	0.85085	7.1838	3	0	Median	0.9565	0.92743	16.222	3	0	Median	0.79668	0.81241	16.567	3	0	Plateau	3743600000	1909400000	1834300000	930420000	399420000	531000000	1171100000	668410000	502690000	921530000	448230000	473300000	720590000	393300000	327290000	31219	1508	29544	193323;193324;193325;193326;193327;193328;193329;193330;193331;193332;193333;193334	261505;261506;261507;261508;261509;261510;261511;261512;261513;261514;261515;261516;261517;261518;261519	261510			15	
LIHAILVR	0	Unmodified	933.61237	0.6123712	632	O94964	SOGA1	Protein SOGA1;N-terminal form;C-terminal 80 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		46.889	37.73	3	0.00045816	20692	160513_QHF_FH_JSI10Kac_6	88.942	53.062			1.8071	1.7615	74.791	5	5	Median	2.1648	1.8609	NaN	1	1	Median	1.0258	1.2217	98.041	2	2	Median	0.91965	0.89577	95.633	2	2	Median	NaN	NaN	NaN	0	0	Median	86022000	36676000	49346000	12292000	4010700	8281400	45451000	20920000	24531000	28279000	11745000	16534000	0	0	0	31220	632	29545	193335;193336;193337;193338;193339	261520;261521;261522;261523;261524	261523			5	
LIHELAAVYTEAIADIK	1	Unmodified	1869.0248	0.024764773	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			95.412	95.166	3	0.0046742	84294	160511_QHF_FH_JSI10i_2	48.053	37.772			0.31031	0.35859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31031	0.35859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5416000	4760600	655360	0	0	0	5416000	4760600	655360	0	0	0	0	0	0	31221	3888	29546	193340	261525	261525			1	
LIHEPSAALLAYGIGQDSPTGK	1	Unmodified	2237.1692	0.16919718	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							4	2	2	3	75.365	74.39	3	2.4668E-10	65394	160511_QHF_FH_JSI9i_2	113.17	103.88			1.0188	1.0477	18.771	11	9	Median	1.026	0.87835	23.253	4	3	Median	0.8225	0.97011	12.85	2	1	Median	1.1549	1.1618	14.62	2	2	Median	0.94869	1.0519	17.846	3	3	Median	985700000	569340000	416360000	148180000	88119000	60061000	216030000	111190000	104840000	161830000	88843000	72985000	459670000	281190000	178480000	31222	2291	29547	193341;193342;193343;193344;193345;193346;193347;193348;193349;193350;193351	261526;261527;261528;261529;261530;261531;261532;261533;261534;261535;261536;261537	261531			12	
LIHEQEQQSSS	0	Unmodified	1284.5946	0.59460847	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.83	4	4	1			3	3			3	4	4	4	8.6215	5.2426	2	1.1797E-09	3647	160513_QHF_FH_JSI12Kac_4	129.38	127.45			1.0161	1.0194	12.494	15	1	Median	1.173	0.97962	5.2875	3	1	Median	0.82261	1.009	10.274	4	0	Median	1.0261	1.0087	9.5027	4	0	Median	1.0532	1.1255	17.337	4	0	Median	3243400000	1573300000	1670100000	587790000	264380000	323410000	933530000	504180000	429350000	943560000	429610000	513950000	778530000	375170000	403360000	31223	4073	29548	193352;193353;193354;193355;193356;193357;193358;193359;193360;193361;193362;193363;193364;193365;193366	261538;261539;261540;261541;261542;261543;261544;261545;261546;261547;261548;261549;261550;261551;261552;261553;261554;261555;261556;261557;261558;261559;261560	261557			23	
LIHILSTER	0	Unmodified	1080.6291	0.62914348	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS		By matching		3	0			3							2		1		36.407	35.435	2;3	0.0075098	28873	160511_QHF_FH_JSI9i_3	49.418	29.715			1.8062	1.484	8.6104	3	0	Median	1.8018	1.4574	2.5537	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8275	1.6862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128380000	41898000	86480000	81427000	33396000	48031000	0	0	0	46951000	8502200	38448000	0	0	0	31224	4936	29549	193367;193368;193369	261561;261562;261563	261561			3	
LIHIPINNIIVGG	0	Unmodified	1371.8238	0.82382054	1907	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	93.344	92.476	2	0.00058049	79832	160511_QHF_FH_JSI12i_2	69.423	59.192			0.68168	0.78584	15.393	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74035	0.8762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62767	0.7048	NaN	1	0	Median	88077000	52694000	35384000	0	0	0	18739000	11321000	7418500	0	0	0	69338000	41373000	27965000	31225	1907	29550	193370;193371	261564;261565;261566	261565			3	
LIHITIEPLYR	0	Unmodified	1366.7973	0.79727144	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		2	1	1	74.21	69.895	3	2.935E-05	63355	160511_QHF_FH_JSI11i_3	84.658	74.971			1.3729	1.3767	36.415	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2005	1.415	61.482	2	1	Median	1.6288	1.5179	NaN	1	0	Median	1.1572	1.2487	NaN	1	1	Median	166480000	78571000	87906000	0	0	0	92768000	48885000	43883000	67261000	26786000	40476000	6447400	2899800	3547600	31226	3675	29551	193372;193373;193374;193375	261567;261568;261569;261570;261571;261572	261567			6	
LIHLEIK	1	Unmodified	864.54329	0.54328858	2191;1453	Q02750;P36507	MAP2K1;MAP2K2	Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		6	6						4	4	3	4	5	43.094	40.157	3	0.0022999	22248	160513_QHF_FH_JSI10Kac_6	77.058	19.777			0.89505	0.93436	51.227	16	8	Median	1.2118	1.0088	43.627	4	2	Median	0.71379	0.89959	6.1791	3	0	Plateau	0.96073	0.9509	76.994	4	2	Median	0.89571	0.94679	61.537	5	4	Median	1171500000	564170000	607290000	192870000	92047000	100830000	194490000	111390000	83096000	422400000	174200000	248200000	361700000	186530000	175170000	31227	2191;1453	29552	193376;193377;193378;193379;193380;193381;193382;193383;193384;193385;193386;193387;193388;193389;193390;193391	261573;261574;261575;261576;261577;261578;261579;261580;261581;261582;261583;261584;261585;261586;261587;261588;261589;261590;261591;261592;261593;261594;261595;261596;261597;261598;261599	261598			27	
LIHLEIKPAIR	1	Unmodified	1301.8183	0.81834123	2191;1453	Q02750;P36507	MAP2K1;MAP2K2	Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	1	4	1	56.176	51.629	3;4	0.00082917	45209	160511_QHF_FH_JSI11i_3	68.069	60.158			0.91163	0.85224	17.964	7	7	Median	0.98756	0.81824	5.7576	2	2	Median	0.73503	0.8919	NaN	1	1	Median	0.88245	0.83124	16.559	3	3	Median	1.1743	1.2754	NaN	1	1	Median	380240000	177550000	202700000	105450000	48383000	57071000	86718000	47027000	39691000	175960000	77132000	98827000	12113000	5004800	7108100	31228	2191;1453	29553	193392;193393;193394;193395;193396;193397;193398;193399	261600;261601;261602;261603;261604;261605;261606;261607	261601			8	
LIHLNKIDPHAPNEMLYGR	1	Acetyl (K)	2272.1787	0.17865643	380	O43813	LANCL1	LanC-like protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			1	2	76.213	66.81	4	0.00032302	35146	160513_QHF_FH_JSI12Kac_6	77.39	68.344			0.20937	0.22655	259.54	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.083715	0.079759	NaN	1	1	Median	1.4585	1.5777	274.46	2	2	Median	86886000	61086000	25801000	0	0	0	0	0	0	50282000	46764000	3517100	36605000	14321000	22283000	31229	380	29554	193400;193401;193402	261608;261609;261610	261610	199		3	
LIHPDEDISLEER	0	Unmodified	1564.7733	0.77330111	353	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	3.12	1	8	6					1		2	2	6	6	47.923	46.695	2;3	4.478E-10	40254	160511_QHF_FH_JSI11i_2	141.88	125.74			1.043	1.1068	23.244	16	5	Median	1.095	0.94484	12.518	2	0	Median	0.89575	1.1	0.95661	2	0	Median	1.1629	1.1154	31.735	6	3	Median	1.1484	1.2108	18.377	6	2	Median	1857600000	918730000	938890000	194810000	114710000	80094000	316420000	173700000	142720000	767150000	358790000	408360000	579240000	271520000	307720000	31230	353	29555	193403;193404;193405;193406;193407;193408;193409;193410;193411;193412;193413;193414;193415;193416;193417;193418	261611;261612;261613;261614;261615;261616;261617;261618;261619;261620;261621;261622;261623;261624;261625;261626;261627;261628;261629;261630;261631;261632	261623			22	
LIHPDEDISLEERR	0	Unmodified	1720.8744	0.87441214	353	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	40.364	39.812	4	0.0061168	33863	160511_QHF_FH_JSI12i_3	39.005	27.899			0.94748	0.95426	12.134	4	0	Median	1.1432	0.98295	NaN	1	0	Median	0.90328	1.1131	NaN	1	0	Median	0.99384	0.92641	NaN	1	0	Median	0.79939	0.83207	NaN	1	0	Median	286270000	127570000	158700000	38690000	12062000	26628000	61706000	32880000	28826000	147490000	65799000	81695000	38382000	16829000	21553000	31231	353	29556	193419;193420;193421;193422	261633;261634	261634			0	
LIHPVQFVFLR	0	Unmodified	1367.8078	0.80777655	2799	Q2TAA5	ALG11	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	81.132	72.003	3	9.9202E-09	38160	160513_QHF_FH_JSI12Kac_6	111.06	88.14			0.95892	1.0132	26.225	3	0	Median	1.6907	1.4533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90839	0.87262	NaN	1	0	Median	0.95892	1.0132	NaN	1	0	Median	209880000	96725000	113160000	73455000	33126000	40329000	0	0	0	83238000	38087000	45151000	53189000	25512000	27677000	31232	2799	29557	193423;193424;193425	261635;261636;261637;261638;261639	261638			5	
LIHPVQFVFLRK	1	Unmodified	1495.9027	0.90273956	2799	Q2TAA5	ALG11	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			72.966	65.594	4	0.0034493	36076	160513_QHF_FH_JSI10Kac_6	53.528	35.115			0.60376	0.70789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60376	0.70789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104240000	49916000	54323000	0	0	0	104240000	49916000	54323000	0	0	0	0	0	0	31233	2799	29558	193426	261640	261640			1	
LIHQLLTDIGR	0	Unmodified	1277.7456	0.74557022	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			55.16	53.597	2	0.0020222	43932	160511_QHF_FH_JSI9i_3	73.985	69.373			2.4333	2.3874	15.503	2	2	Median	3.1452	2.664	NaN	1	1	Median	1.8826	2.1395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23437000	7671100	15766000	11597000	2988400	8608500	11840000	4682700	7157800	0	0	0	0	0	0	31234	1535	29559	193427;193428	261641;261642	261642			2	
LIHQTNLILQTFK	1	Unmodified	1567.9086	0.9086128	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.42		1	15						11	7	7	5	8	68.877	64.814	2;3	1.4868E-47	34179	160513_QHF_FH_JSI9Kac_6	229.29	189.67			1.0868	1.1407	80.107	27	22	Median	1.3514	1.1553	85.827	7	6	Median	0.91122	1.09	61.522	7	6	Median	1.2635	1.1996	117.08	5	3	Median	0.80312	0.84228	78.869	8	7	Median	11041000000	5828200000	5213200000	2513200000	1158700000	1354500000	2737800000	1459100000	1278700000	1423400000	787820000	635620000	4366900000	2422600000	1944300000	31235	4445	29560	193429;193430;193431;193432;193433;193434;193435;193436;193437;193438;193439;193440;193441;193442;193443;193444;193445;193446;193447;193448;193449;193450;193451;193452;193453;193454;193455	261643;261644;261645;261646;261647;261648;261649;261650;261651;261652;261653;261654;261655;261656;261657;261658;261659;261660;261661;261662;261663;261664;261665;261666;261667;261668;261669;261670;261671;261672;261673;261674;261675;261676;261677;261678;261679;261680;261681;261682	261668			40	
LIHTLDDR	0	Unmodified	981.52434	0.52434406	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.88		4	6						1	1	2	5	3	19.206	17.794	2;3	0.00038386	14538	160511_QHF_FH_JSI12i_3	79.906	56.478			1.2891	1.3037	61.287	8	4	Median	2.8476	2.4322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1548	1.1206	66.422	4	2	Median	1.1637	1.1898	67.337	3	1	Median	1061600000	449340000	612270000	49312000	14786000	34526000	0	0	0	519210000	236820000	282400000	493090000	197740000	295350000	31236	4521	29561	193456;193457;193458;193459;193460;193461;193462;193463;193464;193465;193466	261683;261684;261685;261686;261687;261688;261689;261690;261691;261692;261693;261694;261695	261693			13	
LIHVLNVEK	1	Unmodified	1063.639	0.63897988	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	40.795	39.929	3	0.001754	34052	160511_QHF_FH_JSI12i_3	61.65	40.278			1.8491	1.7577	22.806	2	2	Median	2.4374	2.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4028	1.4959	NaN	1	1	Median	58455000	28144000	30311000	10253000	3106500	7146800	0	0	0	0	0	0	48201000	25037000	23164000	31237	325	29562	193467;193468	261696;261697	261697			2	
LIIAGTSAYAR	0	Unmodified	1134.6397	0.63970816	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.02		4	4			2	3	4	4	4	6	6	5	50.967	44.385	2	3.9863E-11	22999	160513_QHF_FH_JSI12Kac_6	138.4	88.355			1.0205	1.0882	12.235	21	1	Median	1.4207	1.2025	7.5851	4	0	Median	0.97116	1.1308	11.365	6	1	Median	1.0746	1.0556	5.7739	6	0	Median	0.85898	0.93308	8.9502	5	0	Median	14426000000	6715700000	7710000000	2617600000	1049200000	1568300000	3725300000	1869000000	1856300000	4327800000	1984900000	2342900000	3755000000	1812500000	1942500000	31238	1415	29563	193469;193470;193471;193472;193473;193474;193475;193476;193477;193478;193479;193480;193481;193482;193483;193484;193485;193486;193487;193488;193489	261698;261699;261700;261701;261702;261703;261704;261705;261706;261707;261708;261709;261710;261711;261712;261713;261714;261715;261716;261717;261718;261719;261720;261721;261722;261723;261724;261725;261726;261727;261728;261729;261730;261731;261732;261733;261734;261735;261736;261737;261738	261736			41	
LIIAGTSCYSR	0	Unmodified	1239.6282	0.6281572	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	2	2	2	3	45.143	40.509	2	6.667E-07	21859	160513_QHF_FH_JSI11Kac_6	105.78	93.158			0.97385	1.04	23.872	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92611	1.1239	NaN	1	0	Median	0.93357	0.89641	10.024	2	0	Median	1.4521	1.4582	NaN	1	0	Median	231040000	94950000	136090000	0	0	0	21088000	11211000	9877300	103610000	48457000	55156000	106340000	35282000	71054000	31239	1414	29564	193490;193491;193492;193493;193494;193495;193496;193497;193498	261739;261740;261741;261742;261743;261744;261745;261746;261747;261748;261749;261750	261742			12	
LIIGFISK	1	Unmodified	889.56369	0.56368968	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	2	2	74.07	70.037	2	0.0049375	59524	160511_QHF_FH_JSI10i_3	67.169	11.048			1.0268	0.91133	18.38	7	0	Median	1.0729	0.88995	NaN	1	0	Median	0.73694	0.86247	7.3228	2	0	Median	1.1366	1.0633	21.804	2	0	Median	1.1346	1.1733	18.419	2	0	Median	1077200000	552440000	524800000	105100000	43729000	61369000	328780000	197760000	131020000	398690000	187710000	210980000	244670000	123240000	121430000	31240	1529	29565	193499;193500;193501;193502;193503;193504;193505	261751;261752;261753;261754;261755;261756;261757;261758;261759;261760;261761	261752			11	
LIIGQNGILSTPAVSCIIR	0	Unmodified	2024.1452	0.14523103	2633	Q15124	PGM5	Phosphoglucomutase-like protein 5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			98.358	98.097	3	0.047742	81166	160511_QHF_FH_JSI10i_3	15.162	9.0461			17.184	20.176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17.184	20.176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9241700	373580	8868200	0	0	0	9241700	373580	8868200	0	0	0	0	0	0	31241	2633	29566	193506	261762	261762			1	
LIILANGGPQALVQIMR	0	Unmodified	1806.055	0.054959464	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			92.107	85.341	2;3	8.3118E-168	49252	160513_QHF_FH_JSI10Kac_6	298.58	245.79			1.0496	1.2601	18.583	3	0	Plateau	1.0244	0.89588	NaN	1	0	Median	1.0448	1.2334	3.0336	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298390000	133200000	165180000	36150000	12208000	23942000	262240000	120990000	141240000	0	0	0	0	0	0	31242	1065	29567	193507;193508;193509	261763;261764;261765;261766;261767	261765			5	
LIILASGGPQALVNIMR	0	Unmodified	1765.0284	0.028410363	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		92.665	85.724	2;3	0.00027446	47403	160513_QHF_FH_JSI11Kac_6	96.673	88.496			1.2298	1.4081	23.444	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0603	1.2126	21.141	2	2	Median	1.6997	1.658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140010000	62296000	77711000	0	0	0	118740000	56915000	61820000	21272000	5380400	15891000	0	0	0	31243	1422	29568	193510;193511;193512	261768;261769;261770	261768			3	
LIILEHYSQASEWAAK	1	Unmodified	1857.9625	0.96249887	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.43		1	8						6	1	4	5	5	71.206	67.42	2;3	2.3156E-75	34573	160513_QHF_FH_JSI12Kac_6	220.76	194.63			0.80817	0.86723	39.822	13	5	Median	0.90979	0.79528	NaN	1	0	Median	0.75459	0.86723	6.4685	3	0	Median	0.74705	0.70994	70.865	4	3	Median	0.93749	0.96275	29.236	5	2	Median	2100400000	1080400000	1020000000	314290000	136690000	177590000	480080000	278020000	202050000	583350000	272780000	310570000	722660000	392890000	329770000	31244	1596	29569	193513;193514;193515;193516;193517;193518;193519;193520;193521;193522;193523;193524;193525;193526;193527	261771;261772;261773;261774;261775;261776;261777;261778;261779;261780;261781;261782;261783;261784;261785;261786;261787;261788;261789;261790;261791;261792	261785			21	
LIINELSNVMEANAAR	0	Unmodified	1756.9142	0.91416847	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	83.783	83.182	2;3	4.3088E-52	74015	160511_QHF_FH_JSI10i_2	264.72	230.84			0.97078	1.0324	8.8203	10	0	Median	1.2011	1.0395	8.9601	2	0	Median	0.87279	1.0849	3.6669	2	0	Median	0.97123	1.1077	14.443	3	0	Plateau	0.90288	1.0082	9.2064	3	0	Median	1264000000	576890000	687140000	262620000	110400000	152230000	282520000	138230000	144290000	390200000	176560000	213640000	328690000	151710000	176990000	31245	4193	29570	193528;193529;193530;193531;193532;193533;193534;193535;193536;193537	261793;261794;261795;261796;261797;261798;261799;261800;261801;261802;261803;261804;261805;261806;261807;261808;261809;261810	261806			17	
LIINSLYK	1	Unmodified	962.58007	0.58006802	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6.63	4	7	1				1	2	4	5	5	5	4	58.873	54.714	1;2	0.00024028	48436	160511_QHF_FH_JSI10i_2	117.17	59.61			0.98736	0.97425	16.221	19	0	Median	1.0769	0.92945	7.7824	5	0	Median	0.95	1.1397	11.087	5	0	Median	1.141	1.1048	25.324	5	0	Median	0.91097	0.98465	17.188	4	0	Median	11111000000	5345200000	5765700000	2349000000	1164100000	1184800000	2967900000	1556700000	1411200000	2924400000	1219300000	1705000000	2869600000	1405000000	1464600000	31246	1057	29571	193538;193539;193540;193541;193542;193543;193544;193545;193546;193547;193548;193549;193550;193551;193552;193553;193554;193555;193556	261811;261812;261813;261814;261815;261816;261817;261818;261819;261820;261821;261822;261823;261824;261825;261826;261827;261828;261829;261830;261831;261832;261833;261834;261835;261836;261837;261838;261839;261840;261841;261842;261843	261837			31	
LIINSLYKNK	2	Acetyl (K)	1246.7285	0.72852317	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.1	0.833							2	2	3		2	3	2	67.995	57.896	2	5.2253E-08	31210	160513_QHF_FH_JSI11Kac_6	133.57	90.327			0.34363	0.3329	69.68	6	0	Median	NaN	NaN	NaN	0	0	Median	0.9586	1.1019	9.2571	2	0	Median	0.31801	0.29954	23.523	3	0	Median	0.26342	0.29787	NaN	1	0	Median	206540000	163540000	43000000	0	0	0	14080000	7058000	7022000	179030000	144150000	34887000	13423000	12331000	1091400	31247	1057	29572	193557;193558;193559;193560;193561;193562;193563	261844;261845;261846;261847	261845	892;893		4	
LIINSSPHLISK	1	Unmodified	1320.7765	0.776536	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	48.591	48.351	2	0.0062486	41375	160511_QHF_FH_JSI12i_3	52.49	21.416			0.77263	0.78257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77263	0.78257	NaN	1	0	Median	26166000	14300000	11866000	0	0	0	0	0	0	0	0	0	26166000	14300000	11866000	31248	3236	29573	193564;193565	261848;261849	261849			2	
LIIPPALGYGK	1	Unmodified	1140.6907	0.6906811	5067	Q9NWM8	FKBP14	Peptidyl-prolyl cis-trans isomerase FKBP14	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.115	73.854	2	0.0069905	63791	160511_QHF_FH_JSI12i_2	52.716	8.9083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31249	5067	29574	193566	261850	261850			1	
LIIQIWDNDK	1	Unmodified	1256.6765	0.6764876	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									2	2	77.104	76.393	2	1.562E-09	65911	160511_QHF_FH_JSI12i_2	133.57	103.32			0.73921	0.79443	98.385	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78723	0.82096	NaN	1	0	Median	0.32653	0.34169	119.32	2	1	Median	303510000	250920000	52588000	0	0	0	0	0	0	22473000	13217000	9256100	281040000	237710000	43332000	31250	5161	29575	193567;193568;193569;193570	261851;261852;261853;261854;261855	261851			5	
LIIREEADGNK	1	Unmodified	1256.6725	0.67246486	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.605	20.605	2	0.0019633	17322	160511_QHF_FH_JSI11i_3	80.688	57.26			1.304	1.1729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.304	1.1729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34438000	16662000	17777000	0	0	0	0	0	0	34438000	16662000	17777000	0	0	0	31251	2904	29576	193571	261856	261856			1	
LIITEETAK	1	Unmodified	1016.5754	0.57537657	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	35.264	34.477	2	0.0031367	31165	160511_QHF_FH_JSI12i_1	71.692	19.289			0.56377	0.63874	83.291	6	3	Median	1.9072	1.5618	NaN	1	1	Median	0.27116	0.33535	54.097	2	0	Median	0.89941	0.87393	NaN	1	1	Median	0.36043	0.38903	107.15	2	1	Median	1138600000	700650000	437970000	138130000	47524000	90607000	383040000	260750000	122290000	268500000	163350000	105150000	348940000	229020000	119920000	31252	4982	29577	193572;193573;193574;193575;193576;193577	261857;261858;261859;261860;261861	261859			5	
LIITQVR	0	Unmodified	841.53854	0.53853756	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.72		4	2					1	4	3	3	2	3	42.274	37.465	2	0.0016993	32904	160511_QHF_FH_JSI9i_2	117.7	14.719			0.94442	1.0536	18.256	11	0	Median	1.2638	1.0818	3.9499	3	0	Median	0.80724	0.98851	13.7	3	0	Median	0.95435	0.94448	15.463	2	0	Median	0.92799	0.96922	33.791	3	0	Median	4071800000	1949300000	2122500000	513780000	251860000	261930000	1078000000	555550000	522470000	738430000	369090000	369340000	1741600000	772790000	968790000	31253	1544	29578	193578;193579;193580;193581;193582;193583;193584;193585;193586;193587;193588	261862;261863;261864;261865;261866;261867;261868;261869;261870	261865			9	
LIIVASQAMR	0	Oxidation (M)	1116.6325	0.6325143	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.49								3	2	1	1	1	2	47.676	37.643	2	0.0050371	19410	160513_QHF_FH_JSI10Kac_5	60.59	17.343			0.89857	0.90883	16.427	5	2	Median	0.89857	0.74582	NaN	1	1	Median	0.76674	0.90883	NaN	1	0	Median	1.0334	1.0247	NaN	1	1	Median	0.80395	0.87376	23.717	2	0	Median	23728000	13175000	10553000	6182100	2999800	3182200	3943100	2314200	1628900	7915500	4718600	3197000	5687100	3142000	2545100	31254	2305	29579	193589;193590;193591;193592;193593	261871;261872;261873;261874;261875	261873		1906	5	
LIIVASQAMR	0	Unmodified	1100.6376	0.63759967	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		60.144	51.066	2	0.00066674	28115	160513_QHF_FH_JSI10Kac_6	87.696	37.57			0.76467	0.92758	8.3906	3	2	Plateau	1.1696	1.0015	NaN	1	1	Median	0.73608	0.86377	NaN	1	0	Median	1.0146	0.9961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110960000	59571000	51392000	20682000	11339000	9343100	46014000	25971000	20043000	44267000	22260000	22006000	0	0	0	31255	2305	29579	193594;193595;193596	261876;261877;261878;261879	261879			4	
LIIVEGCQR	0	Unmodified	1086.5856	0.5855641	821;1032;1828;2467	P05023;P13637;P54707;Q13733	ATP1A1;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.26		4					2	2		2	2	1	3	41.335	35.78	2	0.00061977	30648	160511_QHF_FH_JSI12i_2	77.282	34.036			1.2876	1.3842	48.055	8	1	Median	2.698	2.2588	95.915	2	0	Median	1.0777	1.287	14.246	2	1	Median	0.90598	0.89819	NaN	1	0	Median	1.4709	1.6317	12.12	3	0	Median	549720000	265130000	284590000	65691000	28423000	37268000	127490000	62437000	65051000	205830000	109980000	95848000	150710000	64292000	86423000	31256	821;1032;1828;2467	29580	193597;193598;193599;193600;193601;193602;193603;193604	261880;261881;261882;261883;261884;261885;261886;261887;261888	261881			9	
LIIWDSYTTNK	1	Unmodified	1352.6976	0.69761697	2032;2030;4830	P62873;P62879;Q9HAV0	GNB1;GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.59	1	5	4					5	4	5	4	4	6	72.354	67.327	2	3.664E-46	32825	160513_QHF_FH_JSI10Kac_5	211.02	158.3			0.99608	0.95556	38.101	19	2	Median	1.0387	0.85479	42	5	1	Median	0.7875	0.95802	10.851	4	0	Linear	1.059	1.0357	11.616	4	0	Median	0.99778	1.0912	47.744	6	1	Median	5798100000	2907400000	2890800000	1485300000	695220000	790060000	1374200000	776440000	597720000	1486900000	755600000	731280000	1451800000	680110000	771700000	31257	2030;2032;4830	29581	193605;193606;193607;193608;193609;193610;193611;193612;193613;193614;193615;193616;193617;193618;193619;193620;193621;193622;193623	261889;261890;261891;261892;261893;261894;261895;261896;261897;261898;261899;261900;261901;261902;261903;261904;261905;261906;261907;261908;261909;261910;261911;261912;261913;261914;261915;261916;261917;261918;261919;261920;261921;261922;261923;261924;261925;261926;261927	261918			38	
LIKHAVQER	1	Acetyl (K)	1134.6509	0.65094155	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		20.773	11.617	2;3	0.0015375	8021	160513_QHF_FH_JSI11Kac_6	63.694	45.088			0.25768	0.24954	0.22906	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25768	0.24954	0.22906	2	0	Median	NaN	NaN	NaN	0	0	Median	24491000	19147000	5344500	0	0	0	0	0	0	24491000	19147000	5344500	0	0	0	31258	2609	29582	193624;193625	261928;261929	261929	2576		2	
LIKNNASTDYDLSDK	2	Acetyl (K)	1737.8421	0.84210896	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		53.763	44.223	2	0.00073463	23982	160513_QHF_FH_JSI11Kac_3	86.313	52.904			0.27281	0.26372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27281	0.26372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10462000	8277800	2184200	0	0	0	0	0	0	10462000	8277800	2184200	0	0	0	31259	1484	29583	193626	261930	261930	1495		1	
LIKPPAPTSK	2	Unmodified	1050.6437	0.64373091	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			22.151	20.914	3	0.0051029	16740	160511_QHF_FH_JSI9i_3	45.661	39.22			1.245	1.1979	10.654	2	0	Median	1.3927	1.111	NaN	1	0	Median	1.113	1.2916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251160000	127390000	123770000	127720000	60714000	67008000	123440000	66679000	56761000	0	0	0	0	0	0	31260	2947	29584	193627;193628	261931;261932	261932			2	
LIKVHLDK	2	Acetyl (K)	1006.6175	0.61751616	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								2	6	1	2	4	1	46.698	37.064	2;3	0.0017836	20326	160513_QHF_FH_JSI10Kac_6	74.464	33.016			1.0322	0.89781	196.76	5	1	Median	1.0322	0.89781	NaN	1	0	Median	1.5845	1.8703	NaN	1	0	Median	3.8908	3.7222	345.68	2	1	Median	0.40643	0.42578	NaN	1	0	Median	445240000	327850000	117390000	12941000	6716600	6223900	73699000	28451000	45248000	326230000	269750000	56477000	32371000	22929000	9442600	31261	1979	29585	193629;193630;193631;193632;193633;193634;193635;193636	261933;261934;261935;261936;261937;261938	261938	2001;2002		6	
LILACIMGYFAGK	1	Unmodified	1455.7618	0.76181391	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.199	87.792	2	1.3697E-40	51985	160513_QHF_FH_JSI10Kac_6	198.65	161.17			1.0361	0.94148	28.515	4	0	Median	1.2464	1.0826	NaN	1	0	Median	0.65211	0.78734	NaN	1	0	Median	0.86127	0.81879	NaN	1	0	Median	1.3847	1.4549	NaN	1	0	Median	1815700000	843210000	972500000	278930000	115850000	163070000	280410000	176700000	103710000	765830000	352050000	413770000	490540000	198600000	291940000	31262	5090	29586	193637;193638;193639;193640	261939;261940;261941;261942;261943;261944;261945	261945			7	
LILAPMVR	0	Unmodified	911.56264	0.56264382	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		62.026	61.271	2	0.0032011	54350	160511_QHF_FH_JSI11i_3	80.555	54.728			0.55632	0.57369	16.268	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5734	0.64363	NaN	1	1	Median	0.53976	0.51135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123250000	78457000	44797000	0	0	0	39371000	23871000	15500000	83883000	54586000	29297000	0	0	0	31263	5100	29587	193641;193642	261946;261947	261946			2	
LILDLSMK	1	Unmodified	931.54124	0.54123967	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	72.243	71.35	2	0.0066274	61439	160511_QHF_FH_JSI12i_2	61.999	43.194			0.93966	1.0825	12.91	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71164	0.86804	NaN	1	0	Median	1.0786	1.0885	NaN	1	0	Median	0.93966	1.0825	NaN	1	0	Median	158870000	80553000	78315000	0	0	0	35323000	19237000	16086000	57040000	25868000	31172000	66505000	35448000	31057000	31264	1784	29588	193643;193644;193645	261948;261949;261950;261951	261948			4	
LILDSAR	0	Unmodified	786.45995	0.45995289	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.58	4	4	3				3	4	3	5	6	4	6	31.412	26.556	2	3.6543E-11	13947	160513_QHF_FH_JSI10Kac_5	148.07	52.116			0.99597	1.0953	16.627	21	1	Median	1.2816	1.0957	19.47	5	0	Median	0.92537	1.1019	6.9711	6	0	Median	1.1533	1.1441	12.665	4	0	Median	0.90542	0.97659	25.454	6	1	Median	20672000000	10017000000	10655000000	4138900000	1873100000	2265900000	5148500000	2739500000	2409000000	6481300000	2997800000	3483600000	4903600000	2406900000	2496700000	31265	1322	29589	193646;193647;193648;193649;193650;193651;193652;193653;193654;193655;193656;193657;193658;193659;193660;193661;193662;193663;193664;193665;193666	261952;261953;261954;261955;261956;261957;261958;261959;261960;261961;261962;261963;261964;261965;261966;261967;261968;261969;261970;261971;261972;261973;261974;261975	261973			24	
LILDVFCGSQMHFVR	0	Oxidation (M)	1836.9015	0.90149529	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	79.155	78.412	3	9.8397E-06	67945	160511_QHF_FH_JSI12i_3	121.31	106.06			1.1223	1.1614	21.241	4	0	Median	1.5188	1.2326	NaN	1	0	Median	0.95525	1.0943	NaN	1	0	Median	0.9169	0.82675	NaN	1	0	Median	1.3185	1.3468	NaN	1	0	Median	189860000	94586000	95276000	26300000	11818000	14483000	46973000	25447000	21526000	47541000	23497000	24044000	69048000	33824000	35223000	31266	1000	29590	193667;193668;193669;193670	261976;261977;261978;261979	261978		579	4	
LILDVFCGSQMHFVR	0	Unmodified	1820.9066	0.90658067	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.56		2	5						5	2	4	3	3	88.308	84.82	2;3	2.9721E-33	43469	160513_QHF_FH_JSI10Kac_6	165.64	143.04			1.0777	1.2673	27.792	12	2	Median	1.5623	1.3023	13.07	2	0	Median	1.0777	1.3003	6.9394	4	0	Median	0.92273	0.80015	10.327	3	1	Plateau	1.2433	1.2825	44.986	3	1	Median	2273000000	1002700000	1270400000	306010000	124730000	181280000	719970000	302510000	417460000	650210000	305540000	344670000	596810000	269870000	326940000	31267	1000	29590	193671;193672;193673;193674;193675;193676;193677;193678;193679;193680;193681;193682	261980;261981;261982;261983;261984;261985;261986;261987;261988;261989;261990;261991;261992;261993;261994;261995;261996;261997	261996			18	
LILDWVPYINGK	1	Unmodified	1429.7969	0.79693709	224	O14957	UQCR11	Cytochrome b-c1 complex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.15	101.08	2	2.5392E-31	86885	160511_QHF_FH_JSI12i_2	188.66	114.73			1.1835	1.1171	34.203	6	1	Median	1.2758	1.11	NaN	1	0	Median	0.90977	1.1243	NaN	1	0	Median	1.0109	0.97261	18.557	2	1	Median	1.7723	1.8743	26.866	2	0	Median	608870000	254030000	354840000	105420000	44338000	61086000	81424000	44113000	37311000	205270000	104080000	101190000	216750000	61497000	155250000	31268	224	29591	193683;193684;193685;193686;193687;193688	261998;261999;262000;262001;262002;262003;262004	261999			7	
LILEQMQK	1	Unmodified	1001.558	0.55795237	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	2	1	43.161	42.325	2	0.00053249	38022	160511_QHF_FH_JSI10i_1	117.16	40.314			1.8003	1.4928	45.144	8	3	Median	1.9998	1.6626	22.851	3	2	Median	0.87417	1.0501	7.7787	2	0	Median	1.9448	1.9391	74.732	2	0	Median	2.7708	2.8437	NaN	1	1	Median	3137500000	1532200000	1605300000	624930000	274330000	350600000	1127200000	649980000	477230000	1197700000	546120000	651620000	187660000	61779000	125880000	31269	1386	29592	193689;193690;193691;193692;193693;193694;193695;193696	262005;262006;262007;262008;262009;262010;262011;262012;262013;262014;262015;262016	262009			12	
LILEVHQFSR	0	Unmodified	1240.6928	0.69280637	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	2	3	1	3	59.477	52.122	2;3	1.1126E-06	28729	160513_QHF_FH_JSI10Kac_6	112.85	87.992			0.94195	1.0098	12.843	9	3	Median	1.1209	0.9453	22.877	2	1	Median	0.94702	1.1355	10.735	3	1	Plateau	1.1851	1.1174	NaN	1	0	Median	0.87367	0.89306	7.8275	3	1	Median	609410000	308290000	301130000	62984000	32321000	30662000	143510000	66713000	76800000	52674000	25091000	27583000	350240000	184160000	166080000	31270	2162	29593	193697;193698;193699;193700;193701;193702;193703;193704;193705	262017;262018;262019;262020;262021;262022;262023;262024;262025;262026;262027	262027			11	
LILEYVK	1	Unmodified	876.53206	0.5320552	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.737	55.794	2	0.013952	48190	160511_QHF_FH_JSI11i_2	66.993	23.927			0.95851	1.0621	9.0506	4	0	Median	1.3234	1.1455	NaN	1	0	Median	0.92019	1.1198	NaN	1	0	Median	0.99842	1.0075	NaN	1	0	Median	0.87648	0.94478	NaN	1	0	Median	873350000	455700000	417650000	134680000	58642000	76043000	200560000	123040000	77514000	303670000	151280000	152390000	234440000	122730000	111700000	31271	3232	29594	193706;193707;193708;193709	262028;262029;262030	262030			3	
LILFLNK	1	Unmodified	859.55312	0.55312499	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	74.509	70.138	2	0.0066928	37431	160513_QHF_FH_JSI11Kac_6	91.093	20.027			1.0624	1.0869	7.9093	7	0	Median	1.2446	1.0492	10.045	2	0	Median	0.98918	1.1522	NaN	1	0	Median	1.1068	1.0377	9.9056	2	0	Median	0.97204	1.0228	8.5954	2	0	Median	454600000	224250000	230350000	136810000	59314000	77496000	43104000	21798000	21306000	149560000	74912000	74644000	125130000	68230000	56904000	31272	486	29595	193710;193711;193712;193713;193714;193715;193716	262031;262032;262033;262034;262035;262036	262032			6	
LILGLMMPPAHYDAK	1	Unmodified	1668.8732	0.87315527	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.19		4	11						7	5	6	7	4	81.837	78.85	2;3	2.8593E-43	41118	160513_QHF_FH_JSI10Kac_6	215.46	192.23			0.90411	0.96372	17.938	18	7	Median	1.1422	0.97962	13.628	3	0	Plateau	0.81212	0.96459	14.211	5	2	Median	0.8875	0.84242	25.331	6	3	Median	1.0275	1.0713	13.274	4	2	Median	5576700000	2637200000	2939500000	887270000	376110000	511160000	1419100000	777520000	641560000	1923900000	881240000	1042700000	1346400000	602280000	744130000	31273	891	29596	193717;193718;193719;193720;193721;193722;193723;193724;193725;193726;193727;193728;193729;193730;193731;193732;193733;193734;193735;193736;193737;193738	262037;262038;262039;262040;262041;262042;262043;262044;262045;262046;262047;262048;262049;262050;262051;262052;262053;262054;262055;262056;262057;262058;262059;262060;262061;262062;262063;262064;262065;262066;262067;262068;262069;262070;262071;262072;262073;262074;262075;262076;262077;262078;262079	262079			42	
LILGLMMPPAHYDAK	1	Oxidation (M)	1684.8681	0.8680699	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5		1	4	2	76.13	69.851	3	0.0031908	63104	160511_QHF_FH_JSI12i_3	45.54	41.225			0.95963	0.91493	14.926	7	4	Median	NaN	NaN	NaN	0	0	Median	0.77285	0.91191	NaN	1	0	Median	0.97811	0.91906	15.553	4	4	Median	0.98919	1.0265	19.411	2	0	Median	291150000	148310000	142850000	0	0	0	47226000	26484000	20742000	183980000	93175000	90805000	59948000	28649000	31299000	31274	891	29596	193739;193740;193741;193742;193743;193744;193745	262080;262081;262082;262083;262084;262085;262086;262087;262088;262089	262084		454;455	9	
LILGLMMPPAHYDAK	1	2 Oxidation (M)	1700.863	0.86298452	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	1	3	1	1	67.777	58.637	3	0.00024576	31822	160513_QHF_FH_JSI11Kac_6	69.261	51.123			0.99828	1.0064	21.021	6	1	Median	1.075	0.91068	NaN	1	0	Median	0.92707	1.1123	28.436	3	1	Median	0.92311	0.90866	NaN	1	0	Median	1.12	1.2169	NaN	1	0	Median	158100000	76434000	81663000	32649000	16386000	16263000	74136000	33395000	40741000	25482000	12734000	12748000	25829000	13918000	11910000	31275	891	29596	193746;193747;193748;193749;193750;193751	262090;262091;262092;262093;262094;262095;262096	262090		454;455	7	
LILGNYK	1	Unmodified	819.48544	0.48543935	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.035	37.945	2	0.030931	32303	160511_QHF_FH_JSI12i_3	53.71	8.7367			1.1599	1.1322	26.354	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4536	1.3641	NaN	1	0	Median	0.92552	0.93972	NaN	1	1	Median	286750000	100010000	186730000	0	0	0	0	0	0	145790000	45309000	100480000	140960000	54705000	86250000	31276	418	29597	193752;193753	262097;262098	262098			2	
LILIACGTSYHAGVATR	0	Unmodified	1801.9509	0.95088832	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	65.721	56.577	3	3.355E-06	31118	160513_QHF_FH_JSI10Kac_6	90.793	79.688			0.99417	1.0003	15.376	4	1	Median	0.9554	0.82899	NaN	1	0	Median	0.79286	0.92807	NaN	1	0	Median	1.165	1.1704	NaN	1	1	Median	1.0345	1.0781	NaN	1	0	Median	207560000	107440000	100120000	30002000	19125000	10877000	104850000	53214000	51631000	36555000	18572000	17984000	36159000	16530000	19629000	31277	2242	29598	193754;193755;193756;193757	262099;262100;262101;262102	262102			3	
LILIESR	0	Unmodified	842.52255	0.52255314	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.55	3	4	4				3	4	4	4	6	6	6	49.568	44.081	2	4.5905E-17	23354	160513_QHF_FH_JSI9Kac_6	167.25	71.296			0.9861	1.0178	9.8177	22	0	Median	1.2928	1.0869	7.2884	4	0	Median	0.89003	1.0483	7.0937	6	0	Median	1.0453	0.99634	9.943	6	0	Median	0.92174	0.98852	13.561	6	0	Median	14030000000	6864800000	7165500000	2731400000	1157900000	1573400000	3483000000	1824600000	1658400000	4477700000	2198900000	2278800000	3338200000	1683300000	1654900000	31278	1995	29599	193758;193759;193760;193761;193762;193763;193764;193765;193766;193767;193768;193769;193770;193771;193772;193773;193774;193775;193776;193777;193778;193779	262103;262104;262105;262106;262107;262108;262109;262110;262111;262112;262113;262114;262115;262116;262117;262118;262119;262120;262121;262122;262123;262124;262125;262126;262127;262128;262129;262130;262131;262132;262133;262134;262135;262136;262137;262138;262139;262140;262141;262142;262143	262138			41	
LILISTNGSFIR	0	Unmodified	1332.7765	0.776536	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13.4	5.2			1						4	1	2	1	1	81.009	72.751	2	8.8979E-13	39202	160513_QHF_FH_JSI9Kac_6	131.22	95.014			0.6831	0.72808	20.06	4	0	Linear	0.97952	0.83738	NaN	1	0	Median	0.64052	0.7506	NaN	1	0	Median	1.0496	0.98736	NaN	1	0	Median	1.1268	1.1887	NaN	1	0	Median	448870000	238670000	210200000	100360000	49011000	51345000	238160000	137480000	100680000	78655000	34852000	43802000	31700000	17330000	14370000	31279	3159	29600	193780;193781;193782;193783;193784	262144;262145;262146;262147;262148;262149	262146			6	
LILLHHK	1	Unmodified	872.55961	0.55960735	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			19.285	18.157	3	0.037481	14883	160511_QHF_FH_JSI10i_3	31.289	8.2701			0.28217	0.33461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28217	0.33461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19142000	14440000	4701600	0	0	0	19142000	14440000	4701600	0	0	0	0	0	0	31280	167	29601	193785	262150	262150			1	
LILLWYNPVTEEDVQLR	0	Unmodified	2100.1255	0.12554145	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			95.25	88.433	2;3	2.2283E-96	51513	160513_QHF_FH_JSI10Kac_6	275.95	192.09			0.97681	1.1306	28.629	3	1	Median	0.97681	0.82252	NaN	1	1	Median	1.068	1.2832	17.908	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	360230000	170290000	189950000	57756000	26793000	30963000	302480000	143490000	158980000	0	0	0	0	0	0	31281	4337	29602	193786;193787;193788	262151;262152;262153;262154	262153			4	
LILMDLK	1	Unmodified	844.50921	0.50921126	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	67.989	67.092	2	0.020341	58515	160511_QHF_FH_JSI11i_2	60.76	24.574			0.83544	1.0808	18.343	4	1	Linear	0.95358	0.82246	NaN	1	0	Median	0.73193	0.88777	NaN	1	0	Median	0.67659	0.69586	NaN	1	1	Median	0.97228	1.0829	NaN	1	0	Median	105460000	59613000	45847000	19742000	10220000	9521600	23126000	14296000	8830400	34691000	17504000	17187000	27901000	17593000	10308000	31282	4443	29603	193789;193790;193791;193792;193793	262155;262156;262157	262155			3	
LILPELGPVFK	1	Unmodified	1224.7482	0.74819598	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	99.814	99.686	2	6.177E-05	87458	160511_QHF_FH_JSI11i_2	93.551	88.767			0.93748	1.0466	12.226	5	0	Median	0.93748	0.81238	NaN	1	0	Median	0.86454	1.0466	0	2	0	Median	0.95421	0.94801	NaN	1	0	Median	1.0263	1.1081	NaN	1	0	Median	104350000	54718000	49633000	14375000	7746100	6628900	37041000	20182000	16859000	30089000	14894000	15194000	22847000	11896000	10951000	31283	3102	29604	193794;193795;193796;193797;193798	262158;262159;262160;262161;262162;262163	262162			6	
LILPHVDIQLK	1	Unmodified	1287.7915	0.79145778	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	80.107	79.425	3	0.00018259	68763	160511_QHF_FH_JSI12i_3	68.536	59.214			1.039	1.0615	21.045	7	1	Median	1.3398	1.162	NaN	1	0	Median	0.89233	1.0482	21.334	2	0	Median	0.91348	0.86702	28.626	2	0	Median	0.91557	0.96841	26.478	2	1	Median	360460000	164440000	196010000	14605000	7313100	7292200	43504000	23002000	20502000	113200000	48634000	64570000	189140000	85496000	103650000	31284	1635	29605	193799;193800;193801;193802;193803;193804;193805;193806	262164;262165;262166;262167;262168;262169	262169			6	
LILPHVPAILQYLSK	1	Unmodified	1704.0338	0.033813316	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				93.515	84.574	3	0.0061436	47718	160513_QHF_FH_JSI9Kac_6	48.899	42.461			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31285	557	29606	193807	262170	262170			1	
LILPVGPAGGNQMLEQYDK	1	Unmodified	2042.0507	0.050661947	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.653	10	9	2							4	6	7	4	88.057	87.617	2;3	8.3036E-33	79800	160511_QHF_FH_JSI11i_1	152.37	142.96			1.1528	1.1592	28.355	21	11	Median	1.1923	0.99257	25.402	4	2	Median	0.81818	1.0075	17.189	6	5	Median	1.2334	1.218	16.183	7	4	Median	1.3344	1.3783	43.35	4	0	Median	1198300000	565190000	633140000	145150000	64586000	80561000	424230000	211260000	212970000	486870000	232690000	254180000	142080000	56652000	85424000	31286	1202	29607	193808;193809;193810;193811;193812;193813;193814;193815;193816;193817;193818;193819;193820;193821;193822;193823;193824;193825;193826;193827;193828	262171;262172;262173;262174;262175;262176;262177;262178;262179;262180;262181;262182;262183;262184;262185;262186;262187;262188;262189;262190;262191;262192;262193;262194;262195;262196;262197;262198;262199;262200;262201	262173			31	
LILPYSLSEAITAR	0	Unmodified	1545.8766	0.87664397	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			97.058	96.63	2	0.0091818	78562	160511_QHF_FH_JSI9i_3	47.261	22.044			1.0412	1.2528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0412	1.2528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7720400	4081500	3638900	0	0	0	7720400	4081500	3638900	0	0	0	0	0	0	31287	2420	29608	193829;193830	262202;262203	262203			2	
LILQIGR	0	Unmodified	811.52797	0.52797287	4885	Q9NP73	ALG13	Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			60.294	51.88	2	0.0343	28640	160513_QHF_FH_JSI10Kac_6	59.795	16.827			0.92365	1.0595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92365	1.0595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13301000	7145900	6154900	0	0	0	13301000	7145900	6154900	0	0	0	0	0	0	31288	4885	29609	193831	262204	262204			1	
LILSETSIFDVLPNFFYHSNQVVR	0	Unmodified	2837.4752	0.4752156	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	98.353	88.911	3	1.7937E-09	48810	160513_QHF_FH_JSI12Kac_6	133.68	112.07			0.55077	0.59941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55077	0.59941	NaN	1	1	Median	60133000	44461000	15671000	0	0	0	0	0	0	0	0	0	60133000	44461000	15671000	31289	2348	29610	193832	262205	262205			1	
LILSTDTLEELK	1	Unmodified	1373.7654	0.76536219	4383	Q9BRT2	UQCC2	Ubiquinol-cytochrome-c reductase complex assembly factor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	81.669	81.327	2	0.00014695	73767	160511_QHF_FH_JSI10i_1	83.862	46.134			0.78407	0.91541	13.654	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.78407	0.91541	NaN	1	0	Median	0.91576	0.86362	NaN	1	0	Median	1.0767	1.1203	NaN	1	0	Median	101520000	59317000	42199000	0	0	0	56868000	31859000	25009000	24925000	16337000	8589000	19723000	11122000	8601100	31290	4383	29611	193833;193834;193835;193836	262206;262207;262208	262208			3	
LILSTLKK	2	Unmodified	914.61645	0.61645353	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.352	34.912	3	0.058755	29126	160511_QHF_FH_JSI10i_3	22.086	13.223			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6010300	6010300	0	0	0	0	6010300	6010300	0	0	0	0	0	0	0	31291	3382	29612	193837	262209	262209			1	
LILTEASK	1	Unmodified	873.51713	0.51713341	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		31.239	30.452	2	0.030226	25856	160511_QHF_FH_JSI11i_2	41.631	8.8482			0.91425	0.89275	13.657	3	0	Plateau	1.2924	1.1163	NaN	1	0	Median	0.91425	1.1354	NaN	1	0	Median	0.88202	0.88908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123840000	58601000	65234000	30114000	14626000	15489000	24240000	11242000	12998000	69481000	32733000	36748000	0	0	0	31292	5032	29613	193838;193839;193840	262210;262211	262211			2	
LILTFFK	1	Unmodified	880.54223	0.54222595	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			2						2	2		1	1	84.469	79.636	2	0.017222	41462	160513_QHF_FH_JSI11Kac_6	73.039	33.496			1.5447	1.4146	37.954	4	0	Median	1.1631	1.003	23.79	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7469	1.6861	NaN	1	0	Median	1.8276	1.9877	NaN	1	0	Median	62807000	25399000	37408000	36615000	15809000	20807000	0	0	0	18915000	6537300	12378000	7276600	3053000	4223600	31293	610	29614	193841;193842;193843;193844	262212;262213;262214;262215	262212			4	
LILTHMEPEHR	0	Unmodified	1374.7078	0.70780451	3080	Q6NXR4	TTI2	TELO2-interacting protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		29.815	29.815	4	0.0022849	25787	160511_QHF_FH_JSI11i_3	43.604	33.717			0.62675	0.58569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62675	0.58569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19828000	10257000	9571200	0	0	0	0	0	0	19828000	10257000	9571200	0	0	0	31294	3080	29615	193845	262216	262216			1	
LILTLTHGTAVCTR	0	Unmodified	1554.8552	0.85519702	838	P05413	FABP3	Fatty acid-binding protein, heart	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.618	53.376	3	0.0004317	29015	160513_QHF_FH_JSI11Kac_6	64.675	54.623			1.3455	1.5394	26.52	4	0	Median	2.7292	2.3494	NaN	1	0	Median	1.2652	1.5032	NaN	1	0	Median	1.2758	1.2517	NaN	1	0	Median	1.419	1.5765	NaN	1	0	Median	84109000	40857000	43252000	14236000	3880000	10356000	33574000	19929000	13645000	26172000	12891000	13281000	10126000	4156800	5969500	31295	838	29616	193846;193847;193848;193849	262217;262218;262219;262220;262221	262218			5	
LILTPFER	0	Unmodified	987.57532	0.57531699	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	67.185	66.094	2	0.0081696	55375	160511_QHF_FH_JSI10i_3	57.281	39.514			1.2992	1.3335	9.5603	3	1	Plateau	1.3529	1.1059	NaN	1	0	Median	1.046	1.2119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2992	1.3389	NaN	1	1	Median	288460000	135360000	153100000	29116000	12445000	16671000	58317000	27701000	30616000	0	0	0	201030000	95211000	105820000	31296	4621	29617	193850;193851;193852	262222;262223;262224	262223			3	
LILWYFEHQLK	1	Unmodified	1488.8129	0.8129215	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.27			7						12	6	5	3	5	85.706	79.505	2;3	1.895E-32	40981	160513_QHF_FH_JSI9Kac_6	197.21	166.87			0.93381	0.98012	81.872	17	9	Median	0.67238	0.57643	96.455	6	5	Median	0.80845	0.938	20.647	3	0	Plateau	1.1643	1.0998	8.7767	3	0	Median	0.97907	1.0369	95.728	5	4	Median	13880000000	5636500000	8243200000	4722500000	2007300000	2715200000	4055400000	1702200000	2353300000	2605000000	1226900000	1378200000	2496700000	700090000	1796600000	31297	2213	29618	193853;193854;193855;193856;193857;193858;193859;193860;193861;193862;193863;193864;193865;193866;193867;193868;193869;193870;193871	262225;262226;262227;262228;262229;262230;262231;262232;262233;262234;262235;262236;262237;262238;262239;262240;262241;262242;262243;262244;262245;262246;262247;262248	262235			24	
LILYHWTHSFSSQK	1	Unmodified	1745.8889	0.88893999	3689	Q8TB36	GDAP1	Ganglioside-induced differentiation-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									15	5	3	3	4	65.266	56.089	2;3;4	2.9148E-56	30809	160513_QHF_FH_JSI10Kac_6	205.26	165.19			0.87799	0.95624	32.159	15	4	Median	1.5186	1.2983	42.522	5	3	Median	0.70614	0.8423	3.3798	3	0	Median	1.1859	1.1217	10.594	3	0	Plateau	0.71198	0.76803	40.778	4	1	Linear	2830900000	1497300000	1333600000	873940000	420190000	453750000	1247900000	793770000	454130000	453400000	155380000	298020000	255620000	127950000	127660000	31298	3689	29619	193872;193873;193874;193875;193876;193877;193878;193879;193880;193881;193882;193883;193884;193885;193886	262249;262250;262251;262252;262253;262254;262255;262256;262257;262258;262259;262260;262261;262262;262263;262264;262265;262266;262267;262268;262269;262270;262271;262272;262273;262274;262275;262276;262277;262278;262279	262279			31	
LILYNDGDSLQYIER	0	Unmodified	1810.9101	0.91012895	1794	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.226	77.593	2	0.010615	68175	160511_QHF_FH_JSI11i_2	45.879	21.588			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31299	1794	29620	193887	262280	262280			1	
LILYQEAAATNGR	0	Unmodified	1418.7518	0.75177781	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.22	6.46		4						5		3	2	2	2	52.552	46.721	2	3.2E-05	40414	160511_QHF_FH_JSI11i_2	117.67	81.729			0.81606	0.86784	33.504	8	0	Median	0.69903	0.61399	41.83	3	0	Plateau	0.59094	0.71349	52.552	2	0	Median	0.77621	0.76068	27.522	2	0	Median	0.76786	0.87654	NaN	1	0	Median	194820000	108350000	86469000	40412000	20861000	19551000	29725000	16020000	13705000	76409000	44537000	31871000	48275000	26934000	21342000	31300	4425	29621	193888;193889;193890;193891;193892;193893;193894;193895;193896	262281;262282;262283;262284;262285;262286;262287;262288;262289;262290;262291;262292	262287			12	
LIMAMQTLIPIDEAK	1	Unmodified	1685.9096	0.90960036	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.18	100.08	3	4.0232E-06	86111	160511_QHF_FH_JSI12i_2	85.457	65.879			0.86472	0.89232	24.865	3	1	Plateau	1.6191	1.421	NaN	1	1	Median	0.75912	0.96732	NaN	1	0	Median	0.86472	0.89232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47652000	24693000	22960000	12580000	4514500	8065600	12122000	7823700	4298600	22950000	12355000	10595000	0	0	0	31301	3741	29622	193897;193898;193899;193900	262293;262294;262295;262296	262293			4	
LIMGIGHR	0	Unmodified	895.50619	0.50619157	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.33		1	6						4	3	4	2	2	31.889	28.018	3	0.00095609	15875	160513_QHF_FH_JSI10Kac_6	77.741	17.382			1.1858	1.0782	70.373	11	2	Median	1.24	1.0782	121.22	3	0	Median	0.87083	1.0311	49.338	4	1	Median	0.74413	0.70368	67.427	2	1	Median	1.3023	1.3329	47.662	2	0	Median	1173100000	572890000	600220000	305850000	110150000	195700000	619750000	340810000	278940000	159300000	83583000	75718000	88205000	38348000	49857000	31302	1798	29623	193901;193902;193903;193904;193905;193906;193907;193908;193909;193910;193911	262297;262298;262299;262300;262301;262302;262303;262304;262305;262306	262306			8	
LIMGIGHR	0	Oxidation (M)	911.50111	0.50110619	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	3	3	1	1	23.255	18.327	3	0.0037603	23136	160511_QHF_FH_JSI10i_3	48.561	24.589			1.1649	1.1022	24.75	7	1	Median	1.3549	1.1418	34.692	3	1	Median	0.85687	1.0031	13.321	2	0	Median	1.3857	1.3546	NaN	1	0	Median	0.89885	0.99683	NaN	1	0	Median	168660000	77638000	91021000	96514000	38442000	58072000	55955000	31427000	24527000	6269300	2740600	3528700	9921200	5028100	4893100	31303	1798	29623	193912;193913;193914;193915;193916;193917;193918;193919	262307;262308;262309;262310;262311;262312;262313;262314;262315	262308		1477	9	
LIMLVNDFYYGK	1	Unmodified	1474.753	0.75302336	3067	Q6N043	ZNF280D	Zinc finger protein 280D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	56.841	56.758	2	0.010869	48803	160511_QHF_FH_JSI12i_3	47.198	0.01082			0.96764	0.98229	3.6973	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1362	1.0472	0	2	0	Median	0.96764	0.98229	NaN	1	0	Median	422310000	216410000	205900000	0	0	0	0	0	0	273280000	128080000	145190000	149030000	88325000	60707000	31304	3067	29624	193920;193921;193922	262316;262317	262317			2	
LIMNPSYYNLGDVSHDSVNK	1	Unmodified	2265.0736	0.073582234	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	70.318	69.718	3	3.0435E-14	60380	160511_QHF_FH_JSI12i_3	142.43	133.33			1.2442	1.2364	21.521	5	0	Median	NaN	NaN	NaN	0	0	Median	0.72623	0.86682	NaN	1	0	Median	1.2283	1.157	9.3856	2	0	Median	1.3123	1.4076	13.548	2	0	Median	298020000	148070000	149950000	0	0	0	63951000	37599000	26352000	113590000	57868000	55725000	120480000	52606000	67873000	31305	3516	29625	193923;193924;193925;193926;193927	262318;262319;262320;262321;262322;262323	262323			6	
LIMNYLVTEGFK	1	Unmodified	1426.753	0.75302336	5073	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		4	1						2	2	2	2	1	85.686	82.884	2	6.1116E-07	42956	160513_QHF_FH_JSI10Kac_6	129.16	101.07			0.43724	0.45097	48.366	6	6	Median	0.85491	0.73395	57.732	2	2	Median	0.36713	0.43219	48.04	2	2	Median	0.30779	0.30579	NaN	1	1	Median	0.37754	0.41679	NaN	1	1	Median	329260000	240490000	88773000	69637000	39278000	30358000	102030000	75964000	26061000	82920000	63122000	19798000	74679000	62124000	12556000	31306	5073	29626	193928;193929;193930;193931;193932;193933;193934	262324;262325;262326;262327;262328;262329;262330	262330			7	
LIMQLIPQQLLTTLGPLFR	0	Unmodified	2194.2912	0.29116699	3207;3385	Q86YD1;Q71SY5	PTOV1;MED25	Prostate tumor-overexpressed gene 1 protein;Mediator of RNA polymerase II transcription subunit 25	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			101.17	94.301	2;3	7.3884E-08	56281	160513_QHF_FH_JSI10Kac_6	98.572	90.769			1.1025	1.3094	17.175	3	0	Median	1.9479	1.7088	NaN	1	0	Median	1.0791	1.274	3.8746	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	393000000	187200000	205800000	79799000	24189000	55611000	313200000	163010000	150190000	0	0	0	0	0	0	31307	3385;3207	29627	193935;193936;193937	262331;262332;262333	262332			2	
LIMQYLK	1	Unmodified	907.52011	0.5201103	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	1	3	1	54.349	52.084	2	0.020965	45670	160511_QHF_FH_JSI9i_2	60.344	24.464			1.689	1.7418	86.737	6	5	Median	1.8006	1.5468	NaN	1	1	Median	1.5843	1.9877	NaN	1	1	Median	2.0315	1.9614	113.32	3	2	Median	0.48266	0.53884	NaN	1	1	Median	592910000	282660000	310250000	109690000	57569000	52121000	106460000	56410000	50052000	255410000	94855000	160560000	121350000	73827000	47520000	31308	2801	29628	193938;193939;193940;193941;193942;193943	262334;262335;262336;262337;262338;262339	262337			6	
LIMTLAFTTLGER	0	Unmodified	1464.801	0.80103619	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.772	80.488	2	3.9313E-08	46434	160513_QHF_FH_JSI10Kac_6	132.91	105.8			0.90221	0.88966	7.278	4	1	Median	1.0321	0.88094	NaN	1	0	Median	0.66401	0.78724	NaN	1	0	Median	0.95666	0.93209	NaN	1	0	Median	0.85086	0.89847	NaN	1	1	Median	497560000	257740000	239820000	103470000	52176000	51294000	219440000	115430000	104010000	96112000	53018000	43094000	78539000	37120000	41419000	31309	3749	29629	193944;193945;193946;193947	262340;262341;262342;262343;262344	262344			5	
LIMTLAFTTLGER	0	Oxidation (M)	1480.796	0.79595081	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.75	72.618	2	6.1667E-20	38082	160513_QHF_FH_JSI12Kac_6	153.12	123.65			1.0445	1.1366	23.27	3	1	Median	NaN	NaN	NaN	0	0	Median	0.80963	0.93442	NaN	1	1	Median	1.4964	1.4854	NaN	1	0	Median	1.0445	1.1366	NaN	1	0	Median	151710000	77379000	74332000	0	0	0	57258000	31125000	26133000	34243000	11785000	22458000	60210000	34469000	25741000	31310	3749	29629	193948;193949;193950	262345;262346;262347;262348	262347		2290	3	
LINANMMVLGHEPR	0	Unmodified	1593.812	0.811952	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.33		4	6						5	3	3	4	5	61.533	57.972	2;3	3.4168E-17	31456	160513_QHF_FH_JSI11Kac_6	137.8	125.82			1.0268	0.99562	19.323	15	3	Median	1.2619	1.0867	19.861	3	0	Median	0.67839	0.79801	27.179	3	1	Median	0.99228	0.94174	14.406	4	0	Median	0.97153	0.99965	20.532	5	2	Median	3472100000	1801300000	1670800000	323300000	139150000	184150000	529640000	283320000	246310000	1321000000	667540000	653460000	1298200000	711290000	586870000	31311	144	29630	193951;193952;193953;193954;193955;193956;193957;193958;193959;193960;193961;193962;193963;193964;193965	262349;262350;262351;262352;262353;262354;262355;262356;262357;262358;262359;262360;262361;262362;262363;262364;262365;262366;262367;262368;262369;262370;262371;262372;262373;262374;262375	262358			26	
LINANMMVLGHEPR	0	Oxidation (M)	1609.8069	0.80686662	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	46.954	46.713	3	0.0047062	39944	160511_QHF_FH_JSI12i_3	52.527	46.623			1.1436	1.227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1436	1.227	NaN	1	1	Median	47651000	23551000	24100000	0	0	0	0	0	0	0	0	0	47651000	23551000	24100000	31312	144	29630	193966	262376	262376		64	1	
LINAVELK	1	Unmodified	898.54877	0.54876789	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	43.518	42.439	2	0.017916	36480	160511_QHF_FH_JSI11i_2	58.23	17.452			0.46876	0.47476	87.128	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46876	0.47476	NaN	1	1	Median	0.90841	1.0073	106.82	2	2	Median	633470000	341250000	292220000	0	0	0	0	0	0	265280000	136670000	128610000	368190000	204580000	163620000	31313	1872	29631	193967;193968;193969	262377;262378;262379	262379			3	
LINEIEEMGGMAK	1	Unmodified	1433.6894	0.68943683	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		63.673	63.23	2	0.0025577	57444	160511_QHF_FH_JSI11i_1	66.486	52.328			2.1809	2.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1809	2.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74930000	27226000	47705000	0	0	0	0	0	0	74930000	27226000	47705000	0	0	0	31314	1200	29632	193970	262380	262380			1	
LINEPSNDWDIYYWATEAK	1	Unmodified	2327.0746	0.074628091	5087	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.6	0.49	2	3								1	2	1	1	100.61	100.52	2	1.2809E-32	88282	160511_QHF_FH_JSI11i_2	218.78	197.48			1.0228	1.1777	11.788	5	3	Median	1.3578	1.1793	NaN	1	0	Median	0.9801	1.1385	19.892	2	2	Median	1.0148	1.0109	NaN	1	1	Median	1.0228	1.1777	NaN	1	0	Median	188050000	93543000	94504000	33887000	14926000	18961000	57215000	27468000	29748000	30563000	16217000	14346000	66381000	34932000	31449000	31315	5087	29633	193971;193972;193973;193974;193975	262381;262382;262383;262384;262385	262385			5	
LINKPGPDTFPDYGDVLR	1	Unmodified	2016.0316	0.031641064	5272	Q9UER7	DAXX	Death domain-associated protein 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			72.016	70.559	3	0.0029169	59116	160511_QHF_FH_JSI10i_3	49.708	42.934			0.53444	0.61757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53444	0.61757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58606000	42000000	16607000	0	0	0	58606000	42000000	16607000	0	0	0	0	0	0	31316	5272	29634	193976	262386	262386			1	
LINKPMVGPEAGGTK	2	Unmodified	1510.8177	0.81774888	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			7							1		2	4	30.516	30.472	2;3	0.00026432	25494	160511_QHF_FH_JSI12i_3	84.195	70.165			0.56729	0.53712	89.39	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56729	0.53712	17.875	2	2	Median	0.76756	0.77577	111.8	4	4	Median	1202900000	707150000	495750000	0	0	0	0	0	0	308420000	193280000	115140000	894480000	513860000	380620000	31317	4673	29635	193977;193978;193979;193980;193981;193982;193983	262387;262388;262389;262390;262391;262392;262393	262391			7	
LINKPMVGPEAGGTK	2	Oxidation (M)	1526.8127	0.81266351	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				31.639	30.234	3	0.048834	24656	160511_QHF_FH_JSI9i_3	40.983	20.602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9229900	0	9229900	9229900	0	9229900	0	0	0	0	0	0	0	0	0	31318	4673	29635	193984	262394	262394			1	
LINLVDWSEAFATVVTAAEK	1	Unmodified	2176.1416	0.14158544	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7.8	6.71		2	1						2		2		3	102.49	98.696	3	6.3001E-07	90346	160511_QHF_FH_JSI12i_3	93.776	81.58			0.69271	0.72349	14.529	5	4	Median	NaN	NaN	NaN	0	0	Median	0.52667	0.6587	7.3611	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73144	0.76527	12.938	3	2	Median	134740000	80066000	54672000	0	0	0	21651000	13115000	8536200	0	0	0	113090000	66951000	46136000	31319	5232	29636	193985;193986;193987;193988;193989	262395;262396;262397;262398;262399	262397			5	
LINLVGESLR	0	Unmodified	1112.6554	0.65535823	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	3	3	2	64.207	63.454	2	8.8759E-05	56071	160511_QHF_FH_JSI11i_3	98.233	40.273			1.2112	1.1401	65.347	9	7	Median	2.3911	2.0732	NaN	1	1	Median	0.51748	1.1594	76.075	3	3	Plateau	1.2112	1.1401	61.785	3	2	Median	0.73257	0.77262	90.075	2	1	Median	1493300000	753150000	740170000	134400000	55590000	78806000	437950000	227410000	210540000	581260000	287260000	294000000	339710000	182890000	156820000	31320	1585	29637	193990;193991;193992;193993;193994;193995;193996;193997;193998	262400;262401;262402;262403;262404;262405;262406;262407;262408;262409	262400			10	
LINNNPEIFGPLK	1	Unmodified	1467.8086	0.80856441	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.39	69.499	2	6.1547E-07	60821	160511_QHF_FH_JSI11i_2	132.91	86.022			1.0126	1.0369	5.2613	4	0	Median	1.1729	0.99973	NaN	1	0	Median	0.85859	1.0494	NaN	1	0	Median	1.023	1.0245	NaN	1	0	Median	1.0023	1.1292	NaN	1	0	Median	207540000	102720000	104820000	39183000	19276000	19907000	44998000	25233000	19765000	73166000	35934000	37232000	50194000	22277000	27918000	31321	5058	29638	193999;194000;194001;194002	262410;262411;262412;262413;262414;262415;262416;262417	262415			8	
LINRPIIVFR	0	Unmodified	1239.7816	0.7815618	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	66.935	57.857	3	0.0015695	30611	160513_QHF_FH_JSI9Kac_6	65.347	38.232			0.90475	0.99304	9.0807	4	0	Median	1.322	1.11	NaN	1	0	Median	0.87142	1.0245	NaN	1	0	Median	0.91388	0.89667	NaN	1	0	Median	0.89571	0.96252	NaN	1	0	Median	407150000	171440000	235720000	129320000	50849000	78472000	231270000	97064000	134200000	19721000	10686000	9034400	26847000	12839000	14007000	31322	2751	29639	194003;194004;194005;194006	262418;262419	262418			2	
LINTQAIFAK	1	Unmodified	1117.6495	0.64954457	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		2	2								1		3	59.652	58.972	2	0.0003141	52216	160511_QHF_FH_JSI10i_2	90.601	53.442			0.62587	0.69675	69.945	4	4	Median	NaN	NaN	NaN	0	0	Median	0.50638	0.62474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77354	0.77707	82.901	3	3	Median	290900000	159230000	131670000	0	0	0	81850000	49671000	32179000	0	0	0	209050000	109560000	99492000	31323	1654	29640	194007;194008;194009;194010	262420;262421;262422;262423	262421			4	
LIPDFPVAR	0	Unmodified	1026.5862	0.58621603	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	67.962	67.038	2	0.0076058	57618	160511_QHF_FH_JSI12i_2	61.999	22.457			1.5537	1.3147	21.75	3	2	Median	1.5661	1.3147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5537	1.5578	NaN	1	0	Median	0.92593	1.0116	NaN	1	1	Median	210900000	94791000	116110000	50001000	20131000	29870000	0	0	0	99442000	43625000	55817000	61453000	31035000	30418000	31324	4235	29641	194011;194012;194013	262424;262425;262426	262424			3	
LIPDGCGVK	1	Unmodified	957.49535	0.49535211	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.738	29.413	2	0.0092652	26173	160511_QHF_FH_JSI10i_1	51.854	39.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31325	1292	29642	194014	262427	262427			1	
LIPDSIGK	1	Unmodified	841.49092	0.49091866	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.48	5	4	4				3	5	2	5	5	7	6	42.187	37.611	1;2	0.00024765	32384	160511_QHF_FH_JSI12i_2	116.54	43.503			0.88768	0.89478	21.908	22	2	Median	1.0971	0.92802	27.776	5	0	Median	0.68509	0.82098	31.144	5	0	Median	0.90299	0.8872	20.92	6	2	Median	0.80701	0.85844	11.726	6	0	Median	19172000000	10091000000	9080700000	3570000000	1551700000	2018300000	5323300000	2967400000	2355900000	6426800000	3414200000	3012600000	3852100000	2158200000	1693900000	31326	1948	29643	194015;194016;194017;194018;194019;194020;194021;194022;194023;194024;194025;194026;194027;194028;194029;194030;194031;194032;194033;194034;194035;194036;194037	262428;262429;262430;262431;262432;262433;262434;262435;262436;262437;262438;262439;262440;262441;262442;262443;262444;262445;262446;262447;262448;262449;262450;262451;262452;262453;262454;262455;262456;262457;262458;262459;262460;262461;262462;262463;262464;262465;262466;262467;262468;262469;262470;262471;262472;262473	262433			46	
LIPDSIGKDIEK	2	Acetyl (K)	1368.75	0.75004648	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			72.869	62.261	2	0.060447	33240	160513_QHF_FH_JSI10Kac_4	48.004	19.605			0.37107	0.43242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37107	0.43242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10950000	7501600	3448600	0	0	0	10950000	7501600	3448600	0	0	0	0	0	0	31327	1948	29644	194038	262474	262474			1	
LIPEMDQIFTEVEMTTLEK	1	Unmodified	2266.1113	0.11127287	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.22	1	7	1						1	2	3	2	3	102.19	101.16	2;3	4.1929E-83	88419	160511_QHF_FH_JSI12i_2	252.43	205.12			0.89127	1.0072	33.871	10	3	Median	0.8855	0.75092	1.6175	2	1	Median	0.81802	1.0045	17.982	3	1	Median	1.547	1.5263	14.545	2	0	Median	1.0232	1.1374	36.839	3	1	Median	1730600000	754610000	975990000	374260000	172730000	201520000	558410000	235250000	323160000	188420000	64708000	123720000	609510000	281920000	327580000	31328	5633	29645	194039;194040;194041;194042;194043;194044;194045;194046;194047;194048	262475;262476;262477;262478;262479;262480;262481;262482;262483;262484;262485;262486;262487;262488	262478			14	
LIPESSGK	1	Unmodified	829.45453	0.45453316	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	15.838	15.269	2	0.020585	12586	160511_QHF_FH_JSI9i_1	45.68	8.0345			1.1283	1.3936	19.716	3	0	Plateau	1.1283	0.94393	NaN	1	0	Median	0.93836	1.0881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3786	1.3936	NaN	1	0	Median	480810000	251340000	229460000	146130000	72819000	73312000	153290000	83424000	69867000	0	0	0	181390000	95101000	86285000	31329	3765	29646	194049;194050;194051	262489;262490	262490			2	
LIPGSNLDSEPR	0	Unmodified	1296.6674	0.66737948	3105	Q6P4E1	CASC4	Protein CASC4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.997	41.621	2	0.0017785	35572	160511_QHF_FH_JSI12i_2	60.064	27.223			1.029	1.1006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.029	1.1006	NaN	1	0	Median	40564000	19070000	21494000	0	0	0	0	0	0	0	0	0	40564000	19070000	21494000	31330	3105	29647	194052;194053	262491;262492;262493	262491			3	
LIPHAVLPPTVDVVALGR	0	Unmodified	1866.1091	0.10910352	5196	Q9P206	KIAA1522	Uncharacterized protein KIAA1522	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	90.287	89.907	3	0.00012685	77971	160511_QHF_FH_JSI12i_3	65.716	55.082			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31331	5196	29648	194054;194055;194056	262494;262495;262496	262496			3	
LIPHMHSIIQYMLQR	0	Unmodified	1878.9961	0.99606438	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		82.483	75.881	3	2.0998E-63	42048	160513_QHF_FH_JSI10Kac_6	172.1	150.26			0.96028	0.81976	54.053	3	0	Median	0.96028	0.81976	NaN	1	0	Median	0.57327	0.67913	74.882	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1052200000	652160000	400000000	155500000	88398000	67107000	896650000	563760000	332890000	0	0	0	0	0	0	31332	205	29649	194057;194058;194059;194060;194061	262497;262498;262499;262500;262501;262502	262500			4	
LIPHMHSIIQYMLQR	0	2 Oxidation (M)	1910.9859	0.98589362	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	2	0				By MS/MS	16	0									1				1	59.162	49.276	3	0.031184	25781	160513_QHF_FH_JSI12Kac_6	31.827	20.566			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31333	205	29649	194062	262503	262503			1	
LIPHTPQMHK	1	Unmodified	1200.6437	0.64374769	5780				yes	yes	0	0	0	0			By MS/MS		1	0	1											1		68.164	67.757	2	0.011934	61620	160511_QHF_FH_JSI11i_1	55.676	41.519	+		2.1251	2.0835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1251	2.0835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	186660000	69728000	116930000	0	0	0	0	0	0	186660000	69728000	116930000	0	0	0	31334	5780	29650	194063	262504	262504			1	
LIPHTVLTFVFLEQLR	0	Unmodified	1925.1139	0.11385455	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.537	87.144	3	2.1203E-34	49032	160513_QHF_FH_JSI9Kac_6	174.83	159.19			1.1942	0.75341	25.31	4	1	Linear	0.97045	0.84019	NaN	1	0	Median	0.57604	0.67559	NaN	1	1	Median	1.1729	1.1054	NaN	1	0	Median	0.58808	0.63015	NaN	1	0	Median	974720000	525840000	448880000	242990000	150160000	92824000	236410000	120940000	115460000	336420000	143930000	192490000	158900000	110800000	48104000	31335	5262	29651	194064;194065;194066;194067	262505;262506;262507;262508;262509	262507			4	
LIPHTVLTFVFLEQLRK	1	Unmodified	2053.2088	0.20881757	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	90.708	82.916	2;3;4	3.5818E-97	45779	160513_QHF_FH_JSI9Kac_6	234.67	234.67			0.9154	0.92928	21.611	10	3	Median	0.94455	0.80267	2.7473	2	0	Median	0.7831	0.93207	32.915	4	3	Median	1.0892	1.0245	2.3747	2	0	Median	0.81438	0.85411	14.794	2	0	Median	4596200000	2598400000	1997800000	838250000	451760000	386490000	2306500000	1356500000	950100000	537880000	245080000	292800000	913540000	545110000	368430000	31336	5262	29652	194068;194069;194070;194071;194072;194073;194074;194075;194076;194077	262510;262511;262512;262513;262514;262515;262516;262517;262518;262519;262520;262521;262522;262523;262524;262525;262526	262515			17	
LIPHVQVFAR	0	Unmodified	1178.6924	0.69241244	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		56.921	55.889	3	0.0001083	46847	160511_QHF_FH_JSI10i_3	72.643	69.111			0.86217	0.79342	7.3019	3	0	Median	0.97085	0.78793	NaN	1	0	Median	0.79805	0.89714	NaN	1	0	Median	0.86217	0.79342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75509000	45041000	30468000	23770000	14846000	8924500	31078000	18608000	12470000	20661000	11587000	9073600	0	0	0	31337	4868	29653	194078;194079;194080	262527;262528	262527			2	
LIPLLLQLTSR	0	Unmodified	1265.8071	0.80710784	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	4	2	2	1	95.491	89.057	2	9.2479E-05	47834	160513_QHF_FH_JSI9Kac_6	96.89	55.903			0.15525	0.18502	206.51	7	7	Median	0.11169	0.097138	207.83	3	3	Median	1.2961	1.5226	298.07	2	2	Median	0.62721	0.61041	224.64	2	2	Median	NaN	NaN	NaN	0	0	Median	849290000	419990000	429300000	247030000	116500000	130530000	388610000	206940000	181670000	180580000	96546000	84037000	33067000	0	33067000	31338	2638;2895	29654	194081;194082;194083;194084;194085;194086;194087;194088;194089	262529;262530;262531;262532;262533;262534;262535;262536;262537	262534			9	
LIPPQDILR	0	Unmodified	1063.639	0.63897988	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.442	61.92	2	0.0046463	53882	160511_QHF_FH_JSI11i_2	58.119	23.718			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31339	3962	29655	194090	262538	262538			1	
LIPQALK	1	Unmodified	781.50617	0.5061748	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	2	0		3								1		1	1	38.605	37.656	2	0.028437	33092	160511_QHF_FH_JSI9i_2	53.098	36.171			1.1513	1.0184	66.835	3	0	Median	1.1513	1.0184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.895	2.8789	NaN	1	0	Median	0.7635	0.82671	NaN	1	0	Median	117450000	44372000	73074000	32868000	15035000	17833000	0	0	0	44913000	13569000	31344000	39665000	15768000	23898000	31340	4039	29656	194091;194092;194093	262539	262539			1	
LIPSGAGR	0	Unmodified	769.44464	0.44463717	5322	Q9UI14	RABAC1	Prenylated Rab acceptor protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			17.77	16.694	2	0.056311	13603	160511_QHF_FH_JSI10i_3	44.767	2.5381			0.92593	1.0678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92593	1.0678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68283000	41593000	26690000	0	0	0	68283000	41593000	26690000	0	0	0	0	0	0	31341	5322	29657	194094	262540	262540			1	
LIPSWTTVILVK	1	Unmodified	1368.8381	0.83807362	3550	Q8N5S9	CAMKK1	Calcium/calmodulin-dependent protein kinase kinase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.517	84.797	2	0.019547	48214	160513_QHF_FH_JSI10Kac_6	56.404	29.29			0.83721	0.99239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83721	0.99239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44346000	27634000	16712000	0	0	0	44346000	27634000	16712000	0	0	0	0	0	0	31342	3550	29658	194095	262541	262541			1	
LIPTLVSIMQAPADK	1	Unmodified	1595.8957	0.89566485	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.12	1	9	8						2	5	4	6	5	97.496	96.382	2;3	1.3161E-30	85029	160511_QHF_FH_JSI12i_3	196.24	182.89			0.8592	0.96724	37.328	19	6	Median	1.1247	0.98062	52.92	5	2	Median	0.84821	0.99892	31.998	4	1	Median	0.71358	0.70668	29.203	6	3	Median	0.85516	0.88715	21.01	4	0	Median	1198500000	614800000	583680000	190470000	90843000	99631000	152280000	84522000	67757000	321580000	156560000	165030000	534140000	282880000	251260000	31343	4193	29659	194096;194097;194098;194099;194100;194101;194102;194103;194104;194105;194106;194107;194108;194109;194110;194111;194112;194113;194114;194115	262542;262543;262544;262545;262546;262547;262548;262549;262550;262551;262552;262553;262554;262555;262556;262557;262558;262559;262560;262561;262562;262563;262564;262565;262566;262567;262568;262569;262570;262571;262572;262573;262574;262575;262576;262577;262578;262579;262580	262578			39	
LIPTVPLR	0	Unmodified	907.58549	0.58548775	3351	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.903	60.008	2	0.0018444	51575	160511_QHF_FH_JSI12i_2	94.262	10.018			0.78471	0.77638	19.506	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9085	1.1077	NaN	1	1	Median	0.78471	0.77638	NaN	1	0	Median	0.7507	0.80665	NaN	1	0	Median	145390000	86222000	59163000	0	0	0	39496000	24830000	14666000	65719000	40538000	25181000	40170000	20854000	19316000	31344	3351	29660	194116;194117;194118;194119	262581;262582;262583;262584;262585	262581			5	
LIPVHQVR	0	Unmodified	960.58688	0.58688473	5659	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	22.127	21.495	3	0.0032881	17407	160511_QHF_FH_JSI9i_3	51.854	33.124			0.90712	0.895	24.384	4	1	Median	0.77656	0.63561	NaN	1	0	Median	0.99173	1.1365	NaN	1	1	Median	1.0036	0.94893	NaN	1	0	Median	0.82974	0.84413	NaN	1	0	Median	232890000	135240000	97650000	61806000	31873000	29932000	47272000	28963000	18310000	60494000	35853000	24641000	63313000	38546000	24767000	31345	5659	29661	194120;194121;194122;194123	262586;262587	262587			2	
LIPVITSNCTSK	1	Unmodified	1331.7119	0.71188683	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.838	50.446	2	0.043953	43197	160511_QHF_FH_JSI12i_2	45.161	23.075			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5442400	0	5442400	0	0	0	0	0	0	0	0	0	5442400	0	5442400	31346	3266	29662	194124	262588	262588			1	
LIPVLQVK	1	Unmodified	908.60589	0.60588884	3010	Q63ZY3	KANK2	KN motif and ankyrin repeat domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	65.758	64.864	2	0.024381	56490	160511_QHF_FH_JSI11i_2	53.554	32.999			0.92462	1.0127	23.886	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.50891	0.6281	NaN	1	1	Median	0.79482	0.79231	NaN	1	1	Median	0.92462	1.0127	NaN	1	0	Median	77038000	43581000	33458000	0	0	0	23800000	15190000	8610100	30873000	16986000	13888000	22365000	11405000	10960000	31347	3010	29663	194125;194126;194127	262589;262590;262591	262590			3	
LIPVLVNGMK	1	Unmodified	1082.6522	0.65218711	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	72.475	71.658	2	1.5105E-05	61844	160511_QHF_FH_JSI12i_2	112.17	75.151			2.1023	2.3194	83.06	6	6	Median	2.8492	2.4679	NaN	1	1	Median	0.98366	1.2159	105.12	2	2	Median	0.94049	0.9571	116.41	2	2	Median	2.2847	2.5103	NaN	1	1	Median	1149600000	561300000	588340000	134560000	53252000	81312000	355350000	189530000	165820000	479040000	242740000	236300000	180690000	75778000	104910000	31348	3914	29664	194128;194129;194130;194131;194132;194133;194134	262592;262593;262594;262595;262596;262597;262598	262592			7	
LIPVLVNGMK	1	Oxidation (M)	1098.6471	0.64710173	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	1	0		By MS/MS	By matching		3	0			2								1	1		59.09	58.325	2	0.014695	48902	160511_QHF_FH_JSI10i_3	48.561	38.532			1.0284	1.0498	1.2174	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93228	1.0588	NaN	1	0	Median	1.1344	1.0408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41893000	20245000	21649000	0	0	0	13498000	7033800	6463800	28396000	13211000	15185000	0	0	0	31349	3914	29664	194135;194136	262599	262599		2345	1	
LIPVPMVGFK	1	Unmodified	1099.6464	0.64637345	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		87.783	86.935	2	0.0067499	77476	160511_QHF_FH_JSI11i_3	61.962	35.36			0.8878	0.92472	21.923	4	4	Median	0.86218	0.71355	NaN	1	1	Median	0.8178	0.92472	16.532	2	2	Median	1.2227	1.1564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140050000	69926000	70119000	33115000	16391000	16724000	46367000	25379000	20988000	60563000	28156000	32407000	0	0	0	31350	3258	29665	194137;194138;194139;194140	262600;262601;262602;262603	262600			4	
LIPVSDINDK	1	Unmodified	1112.6077	0.60773933	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	46.02	45.212	2	2.6315E-05	40752	160511_QHF_FH_JSI11i_1	97.431	40.15			0.99543	0.97155	27.435	7	2	Median	1.0764	0.90006	10.81	2	1	Median	0.95621	1.1265	NaN	1	0	Median	0.9252	0.91793	41.034	2	0	Median	0.72455	0.77315	41.766	2	1	Median	565100000	285590000	279510000	129810000	56346000	73465000	108900000	57998000	50899000	177290000	86719000	90572000	149100000	84525000	64576000	31351	2241	29666	194141;194142;194143;194144;194145;194146;194147;194148	262604;262605;262606;262607;262608;262609;262610;262611;262612;262613;262614	262604			11	
LIQAAYDVLSDPQER	0	Unmodified	1716.8683	0.86826413	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	1	3	3	66.336	65.554	2	1.332E-11	58228	160511_QHF_FH_JSI9i_1	108.56	95.363			1.1703	1.1961	66.756	8	8	Median	1.2612	1.0905	102.51	2	2	Median	1.8813	2.2373	NaN	1	1	Median	1.2544	1.3073	64.056	3	3	Median	0.74708	0.79298	45.556	2	2	Median	236760000	91701000	145060000	41698000	19597000	22101000	36640000	9598600	27042000	96642000	35689000	60953000	61781000	26816000	34965000	31352	2883	29667	194149;194150;194151;194152;194153;194154;194155;194156;194157;194158	262615;262616;262617;262618;262619;262620;262621;262622;262623;262624	262621			10	
LIQAIDHNEGFSLI	0	Unmodified	1568.8199	0.81985737	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	85.955	85.15	2	0.0009184	73611	160511_QHF_FH_JSI12i_2	80.979	68.403			0.71936	0.76231	15.251	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69978	0.68438	NaN	1	1	Median	0.73949	0.84912	NaN	1	1	Median	103450000	51910000	51543000	0	0	0	0	0	0	49435000	24690000	24745000	54018000	27220000	26797000	31353	2884	29668	194159;194160	262625;262626	262625			2	
LIQDQQEQIQHLK	1	Unmodified	1619.8631	0.86311917	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								3	3	4	2	32.635	31.788	2;3	1.5692E-22	26999	160511_QHF_FH_JSI12i_2	154.1	122.03			0.76872	0.85584	64.828	8	5	Median	1.5038	1.2978	96.292	2	2	Median	0.60139	0.74994	26.916	2	1	Median	1.6266	1.6665	106.19	2	2	Median	0.92992	1.0347	35.079	2	0	Median	1122300000	479300000	643040000	252120000	91574000	160540000	240470000	121760000	118710000	472170000	180520000	291650000	157590000	85454000	72132000	31354	3896	29669	194161;194162;194163;194164;194165;194166;194167;194168;194169;194170;194171;194172	262627;262628;262629;262630;262631;262632;262633;262634;262635;262636;262637;262638;262639;262640;262641	262630			15	
LIQEIVDK	1	Unmodified	956.55425	0.5542472	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.906	35.314	2	0.016513	31977	160511_QHF_FH_JSI12i_1	59.245	11.502			2.4144	2.5798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4144	2.5798	NaN	1	1	Median	44441000	11336000	33105000	0	0	0	0	0	0	0	0	0	44441000	11336000	33105000	31355	2248	29670	194173	262642	262642			1	
LIQELAK	1	Unmodified	813.496	0.49600404	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.5	6.5	1						1				1	1		30.454	25.656	2	0.020299	22627	160511_QHF_FH_JSI10i_1	60.788	9.822			0.96302	1.0229	13.846	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80769	0.92749	NaN	1	1	Median	1.1482	1.1281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174140000	117930000	56205000	0	0	0	116930000	89184000	27744000	57208000	28747000	28461000	0	0	0	31356	357	29671	194174;194175	262643;262644	262643			2	
LIQEQHPEEELIK	1	Unmodified	1604.841	0.84098675	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		5										2	3	41.68	40.668	2;3	2.1078E-06	34863	160511_QHF_FH_JSI11i_2	132.97	112.87			0.81287	0.84406	43.936	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68496	0.69133	28.229	2	1	Median	0.81287	0.9001	47.674	3	2	Median	326360000	197320000	129040000	0	0	0	0	0	0	198660000	122210000	76449000	127710000	75118000	52591000	31357	2470	29672	194176;194177;194178;194179;194180	262645;262646;262647;262648;262649	262649			5	
LIQESPTLSK	1	Unmodified	1114.6234	0.6233894	3089	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	32.708	30.523	2	8.0354E-05	27448	160511_QHF_FH_JSI12i_1	87.258	29.699			0.97629	1.0446	35.528	6	1	Median	1.5938	1.3188	NaN	1	0	Median	0.59439	0.69734	54.899	2	1	Median	1.0853	1.0701	1.1484	2	0	Median	0.83987	0.88492	NaN	1	0	Median	639390000	319630000	319760000	152690000	60659000	92026000	165740000	94260000	71478000	176810000	90195000	86613000	144160000	74512000	69643000	31358	3089	29673	194181;194182;194183;194184;194185;194186;194187	262650;262651;262652;262653;262654;262655;262656;262657;262658;262659	262651			10	
LIQFLISLVQSNR	0	Unmodified	1529.893	0.89296274	2156	Q00613	HSF1	Heat shock factor protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			93.972	88.252	2;3	4.7951E-12	50814	160513_QHF_FH_JSI10Kac_6	122.42	67.357			0.29887	0.34605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.29887	0.34605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155120000	110650000	44468000	0	0	0	155120000	110650000	44468000	0	0	0	0	0	0	31359	2156	29674	194188;194189;194190	262660;262661;262662	262660			3	
LIQGFWLIDHNDYESGLDLLFHPATAK	1	Unmodified	3112.5658	0.56582153	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	96.169	88.1	3;4	6.8788E-178	49561	160513_QHF_FH_JSI9Kac_6	281.68	256.18			0.73887	0.85313	34.092	6	1	Median	0.87656	0.75295	56.505	2	1	Median	0.71695	0.85313	23.592	2	0	Median	1.2806	1.2099	NaN	1	0	Median	0.6438	0.67326	NaN	1	0	Median	6411500000	3297700000	3113900000	901170000	426300000	474870000	1975800000	1117700000	858080000	2150200000	937530000	1212700000	1384400000	816150000	568250000	31360	3819	29675	194191;194192;194193;194194;194195;194196	262663;262664;262665;262666;262667;262668;262669;262670;262671;262672	262666			10	
LIQHANVQAHSSLIR	0	Unmodified	1685.9325	0.93253614	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			2						6	3	3	2		34.05	27.318	3;4	0.00015946	15375	160513_QHF_FH_JSI10Kac_6	74.772	69.693			0.93634	1.0169	33.909	7	2	Median	0.96753	0.79287	49.487	3	1	Plateau	0.69994	0.83071	14.108	3	1	Median	1.1036	1.1079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92085000	46690000	45395000	42469000	18492000	23978000	42444000	24603000	17841000	7171900	3595300	3576600	0	0	0	31361	2716	29676	194197;194198;194199;194200;194201;194202;194203;194204	262673;262674;262675;262676;262677;262678;262679;262680;262681;262682	262682			10	
LIQHAQIPPEDSEIITNMAHLGVPIVTDSTLR	0	Unmodified	3507.8396	0.83955354	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.16	101.08	4	1.7177E-13	88884	160511_QHF_FH_JSI9i_2	79.19	74.658			1.8709	1.6039	NaN	1	0	Median	1.8709	1.6039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	340770000	128360000	212410000	340770000	128360000	212410000	0	0	0	0	0	0	0	0	0	31362	1962	29677	194205	262683	262683			1	
LIQIAAR	0	Unmodified	783.49667	0.49667274	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	2	2	3	29.342	28.487	2	0.0038429	24710	160511_QHF_FH_JSI9i_2	87.839	7.2843			1.008	0.94944	28.331	6	3	Median	1.323	1.1044	9.6356	2	1	Median	1.446	1.6476	NaN	1	1	Median	0.84642	0.80296	NaN	1	0	Median	0.769	0.82841	7.5373	2	1	Median	1511400000	788730000	722660000	274690000	135050000	139640000	171480000	74607000	96872000	412550000	215180000	197370000	652670000	363890000	288780000	31363	4442	29678	194206;194207;194208;194209;194210;194211;194212;194213;194214;194215	262684;262685;262686;262687;262688;262689;262690;262691;262692;262693	262690			10	
LIQIQDNGTGIRK	1	Unmodified	1454.8205	0.82052608	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			35.674	34.234	3	0.001304	28553	160511_QHF_FH_JSI10i_3	61.212	41.472			1.2442	1.4823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2442	1.4823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55138000	23516000	31622000	0	0	0	55138000	23516000	31622000	0	0	0	0	0	0	31364	1499	29679	194216	262694	262694			1	
LIQLLLLHLQK	1	Unmodified	1330.87	0.87004245	3113	Q6P9B9	INTS5	Integrator complex subunit 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		85.435	76.469	3	0.0047212	42524	160513_QHF_FH_JSI11Kac_6	53.569	44.035			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31365	3113	29680	194217;194218	262695;262696	262695			2	
LIQLMEEIMAEK	1	Unmodified	1446.7462	0.74622343	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.94	4.43		10	5						2	2	5	5	5	96.663	95.643	2;3	3.6588E-07	43036	160513_QHF_FH_JSI12Kac_6	133.07	65.077			1.2276	1.093	257.97	12	12	Median	0.57351	0.4862	356.06	2	2	Median	0.73789	0.9176	357.06	2	2	Median	1.2849	1.2436	266.38	4	4	Median	1.3872	1.4596	288.29	4	4	Median	1250600000	733210000	517430000	154540000	78710000	75829000	295760000	209360000	86394000	366020000	198380000	167640000	434340000	246760000	187570000	31366	3893	29681	194219;194220;194221;194222;194223;194224;194225;194226;194227;194228;194229;194230;194231;194232;194233;194234;194235	262697;262698;262699;262700;262701;262702;262703;262704;262705;262706;262707;262708;262709;262710;262711;262712;262713;262714;262715	262714			19	
LIQMAVALAHIR	0	Unmodified	1334.7857	0.7856609	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	76.796	68.387	3	0.00020788	35837	160513_QHF_FH_JSI12Kac_6	80.245	71.732			0.14953	0.16284	245.54	7	7	Median	0.013636	0.011696	NaN	1	1	Median	0.86337	1.0178	286.34	2	2	Median	0.76251	0.72341	265.45	2	2	Median	0.75423	0.8087	226.65	2	2	Median	616840000	374810000	242030000	53783000	52699000	1084000	416050000	237820000	178230000	106770000	61398000	45375000	40230000	22896000	17334000	31367	3064	29682	194236;194237;194238;194239;194240;194241;194242	262716;262717;262718;262719;262720;262721;262722	262720			7	
LIQNIMK	1	Unmodified	858.49971	0.49970921	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.884	33.547	2	0.04412	28518	160511_QHF_FH_JSI12i_2	48.761	25.741			0.3025	0.33778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3025	0.33778	NaN	1	1	Median	34216000	26605000	7610300	0	0	0	0	0	0	0	0	0	34216000	26605000	7610300	31368	5712	29683	194243	262723	262723			1	
LIQNLDANHDGR	0	Unmodified	1364.6797	0.6796755	4073	Q96FQ6	S100A16	Protein S100-A16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.43	1	8	6				1	4		4	4	7	5	21.495	18.78	2;3	2.6495E-31	16278	160511_QHF_FH_JSI10i_2	188.28	173.13			1.0269	1.0554	24.794	20	2	Median	1.0953	0.93557	20.226	4	0	Median	0.56984	0.7059	21.67	4	0	Linear	0.90602	0.92144	26.792	7	2	Median	1.1189	1.209	14.921	5	0	Median	2513100000	1319100000	1194000000	455370000	242650000	212720000	527120000	339750000	187380000	877710000	456140000	421570000	652860000	280530000	372330000	31369	4073	29684	194244;194245;194246;194247;194248;194249;194250;194251;194252;194253;194254;194255;194256;194257;194258;194259;194260;194261;194262;194263	262724;262725;262726;262727;262728;262729;262730;262731;262732;262733;262734;262735;262736;262737;262738;262739;262740;262741;262742;262743;262744;262745;262746;262747;262748;262749;262750	262746			27	
LIQNNHYAMEDVATR	0	Unmodified	1773.8468	0.84681718	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.631	35.631	3	0.0033149	31087	160511_QHF_FH_JSI11i_3	42.338	31.067			1.3879	1.3115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3879	1.3115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22723000	8791500	13932000	0	0	0	0	0	0	22723000	8791500	13932000	0	0	0	31370	2470	29685	194264;194265	262751;262752	262751			2	
LIQNNHYAMEDVATRR	0	Unmodified	1929.9479	0.94792821	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				32.556	31.139	4	0.0020247	25369	160511_QHF_FH_JSI9i_3	44.312	34.782			0.95872	0.78961	NaN	1	0	Median	0.95872	0.78961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40464000	17410000	23054000	40464000	17410000	23054000	0	0	0	0	0	0	0	0	0	31371	2470	29686	194266	262753;262754	262753			2	
LIQPDHPQISQQVAASLEK	1	Unmodified	2101.1168	0.11676768	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.834	59.7	3	1.7174E-18	52937	160511_QHF_FH_JSI11i_3	159.26	138.61			0.99161	0.97433	5.9138	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98935	0.93442	NaN	1	0	Median	0.99387	1.0159	NaN	1	0	Median	516520000	249100000	267420000	0	0	0	0	0	0	260240000	131430000	128810000	256280000	117670000	138610000	31372	2884	29687	194267;194268	262755;262756;262757;262758	262755			4	
LIQQEDIK	1	Unmodified	985.54441	0.5444108	4813	Q9H9P8	L2HGDH	L-2-hydroxyglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.396	21.213	2	0.019551	17910	160511_QHF_FH_JSI9i_1	57.047	6.3441			1.7852	1.433	NaN	1	1	Median	1.7852	1.433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39095000	14183000	24912000	39095000	14183000	24912000	0	0	0	0	0	0	0	0	0	31373	4813	29688	194269	262759	262759			1	
LIQQFLTLRPDQQLHIFNTLR	0	Unmodified	2593.4493	0.44927563	715	O95674	CDS2	Phosphatidate cytidylyltransferase 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.409	81.69	4	8.2489E-05	46060	160513_QHF_FH_JSI10Kac_6	108.08	91.363			0.67868	0.79668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67868	0.79668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198470000	123000000	75469000	0	0	0	198470000	123000000	75469000	0	0	0	0	0	0	31374	715	29689	194270	262760	262760			1	
LIQQQLEK	1	Unmodified	998.57605	0.57604528	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.39	7	5					1			1	4	4	4	22.271	21.056	2	2.3247E-10	18226	160511_QHF_FH_JSI10i_1	166.96	37.563			1.3094	1.4666	93.312	13	12	Median	2.7273	2.2588	NaN	1	1	Median	0.74367	0.89224	137.64	4	4	Median	1.9628	1.9309	89.435	4	3	Median	0.83066	0.92891	72.465	4	4	Median	1994800000	961060000	1033700000	198940000	90677000	108270000	500370000	282880000	217490000	541290000	238210000	303080000	754180000	349290000	404900000	31375	5669	29690	194271;194272;194273;194274;194275;194276;194277;194278;194279;194280;194281;194282;194283	262761;262762;262763;262764;262765;262766;262767;262768;262769;262770;262771;262772;262773	262768			13	
LIQQQLVLLLHAHK	1	Unmodified	1653.009	0.0089955494	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	75.934	67.272	3;4	1.2939E-06	37057	160513_QHF_FH_JSI10Kac_6	107.37	93.019			0.92499	0.88874	23.422	5	5	Median	1.0397	0.88874	NaN	1	1	Median	0.92499	1.1138	NaN	1	1	Median	0.98452	0.94516	NaN	1	1	Median	0.62285	0.66026	8.322	2	2	Median	573980000	287850000	286130000	100450000	50275000	50174000	295500000	132930000	162570000	71958000	40371000	31587000	106070000	64270000	41804000	31376	2285;3886	29691	194284;194285;194286;194287;194288;194289	262774;262775;262776;262777;262778;262779	262779			6	
LIQSHPESAEDLQEK	1	Unmodified	1722.8424	0.84244331	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							1	1	5	3	26.131	25.636	2;3	8.8249E-08	21856	160511_QHF_FH_JSI9i_2	83.54	72.753			1.1907	1.2128	55.029	8	4	Median	NaN	NaN	NaN	0	0	Median	0.60682	0.73262	NaN	1	0	Median	1.5343	1.5205	71.777	4	3	Median	1.2835	1.437	37.666	3	1	Plateau	492090000	246080000	246000000	0	0	0	79622000	45031000	34591000	225680000	92196000	133480000	186790000	108860000	77933000	31377	2470	29692	194290;194291;194292;194293;194294;194295;194296;194297;194298;194299	262780;262781;262782;262783;262784;262785;262786;262787;262788;262789;262790;262791	262785			12	
LIQYCQSK	1	Unmodified	1038.5168	0.51681584	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	17.931	17.345	2	0.00093466	14884	160511_QHF_FH_JSI12i_1	96.253	40.242			1.2043	1.1428	26.484	7	2	Median	1.5638	1.3024	18.494	2	1	Median	0.87285	1.0098	NaN	1	0	Median	1.3156	1.3	45.783	2	1	Median	0.95391	1.0438	29.06	2	0	Median	1403000000	666060000	736960000	195090000	80998000	114090000	311960000	161770000	150190000	496500000	252030000	244470000	399460000	171260000	228200000	31378	1067	29693	194300;194301;194302;194303;194304;194305;194306	262792;262793;262794;262795;262796;262797;262798;262799;262800	262794			9	
LIRDEGLAVMDK	1	Unmodified	1358.7228	0.72278587	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	43.361	43.245	2;3	4.2935E-05	36881	160511_QHF_FH_JSI12i_3	77.912	54.994			1.3737	1.3659	28.167	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0749	1.0216	28.154	2	2	Median	1.0638	1.0911	39.297	2	1	Median	1927100000	820400000	1106700000	0	0	0	0	0	0	1322000000	527810000	794220000	605050000	292590000	312460000	31379	2307	29694	194307;194308;194309;194310	262801;262802;262803;262804;262805;262806	262804			6	
LIRDGSIDLVINLPNNNTK	1	Unmodified	2108.159	0.15896684	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			77.905	76.496	3	6.3015E-05	64093	160511_QHF_FH_JSI10i_3	67.449	62.119			1.1125	1.087	30.535	2	0	Median	1.0616	0.8759	NaN	1	0	Median	1.1659	1.349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64949000	28518000	36431000	32384000	14563000	17822000	32565000	13956000	18609000	0	0	0	0	0	0	31380	1372	29695	194311;194312	262807;262808;262809;262810	262807			4	
LIRGPAETEATTD	0	Unmodified	1372.6834	0.68342347	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	25.862	25.107	2	1.1996E-09	21581	160511_QHF_FH_JSI11i_3	150.1	141.57			1.102	1.1923	13.849	6	1	Median	1.131	0.97766	NaN	1	0	Median	1.0027	1.1923	0.0561	2	1	Median	1.4687	1.3679	NaN	1	0	Median	1.148	1.2278	18.954	2	0	Median	459650000	199020000	260630000	58582000	26509000	32073000	107210000	58764000	48442000	147660000	59528000	88135000	146200000	54219000	91978000	31381	2306	29696	194313;194314;194315;194316;194317;194318	262811;262812;262813;262814;262815;262816;262817;262818;262819	262812			9	
LIRPYMEPILK	1	Unmodified	1371.7948	0.7948286	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		60.195	60.195	3	0.0057297	53409	160511_QHF_FH_JSI11i_3	43.544	31.625			0.96678	0.90777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96678	0.90777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85158000	49694000	35465000	0	0	0	0	0	0	85158000	49694000	35465000	0	0	0	31382	1535	29697	194319	262820	262820			1	
LISAHSSLSK	1	Unmodified	1041.5819	0.58185893	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			16.018	15.086	3	0.01602	12023	160511_QHF_FH_JSI10i_3	38.402	29.188			0.75848	0.8946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75848	0.8946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26254000	13213000	13041000	0	0	0	26254000	13213000	13041000	0	0	0	0	0	0	31383	545	29698	194320	262821	262821			1	
LISDFPETTSPKCPSR	1	Unmodified	1833.8931	0.89309867	48	CON__P01045-1;CON__Q2KJ62;CON__P01044-1			yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.135	61.499	2	0.018114	56002	160511_QHF_FH_JSI12i_1	54.776	20.89		+	1.0876	1.0827	9.2287	4	0	Median	1.24	1.0024	NaN	1	0	Median	1.0219	1.2147	NaN	1	0	Median	1.0499	1.0217	NaN	1	0	Median	1.1268	1.1474	NaN	1	0	Median	225980000	107450000	118530000	51039000	21881000	29158000	45037000	22379000	22658000	74407000	38939000	35469000	55494000	24253000	31241000	31384	48	29699	194321;194322;194323;194324	262822;262823;262824;262825	262823			4	
LISEILSESVVPDVR	0	Unmodified	1654.9142	0.91415169	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	88.406	87.585	2	2.0747E-06	75540	160511_QHF_FH_JSI12i_2	151.1	123.08			1.0043	1.5865	32.71	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9367	0.91578	NaN	1	1	Median	1.4798	1.6126	2.3126	2	2	Median	110470000	50469000	60005000	0	0	0	0	0	0	41878000	24654000	17223000	68597000	25815000	42782000	31385	3936	29700	194325;194326;194327	262826;262827;262828	262826			3	
LISEMHSFIQIK	1	Unmodified	1444.7748	0.77482144	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	13.4	5.2			1						4	2		1	2	71.216	63.936	3	1.5331E-07	33969	160513_QHF_FH_JSI9Kac_6	124.06	107.12			1.091	1.0719	82.379	5	4	Median	0.92449	0.79137	74.561	2	2	Median	NaN	NaN	NaN	0	0	Median	1.091	1.0719	NaN	1	0	Median	1.7678	1.8371	119.93	2	2	Median	201620000	86065000	115560000	53667000	31902000	21766000	0	0	0	43378000	21629000	21749000	104580000	32533000	72043000	31386	2752	29701	194328;194329;194330;194331;194332	262829;262830;262831;262832;262833;262834	262832			6	
LISFLTHEDIMPR	0	Unmodified	1570.8177	0.81774888	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.974	75.974	3	0.00036143	65973	160511_QHF_FH_JSI12i_3	61.212	54.936			0.46579	0.44427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46579	0.44427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18087000	11308000	6779600	0	0	0	0	0	0	18087000	11308000	6779600	0	0	0	31387	2910	29702	194333;194334	262835;262836	262836			2	
LISGEEHFSSK	1	Unmodified	1232.6037	0.60371659	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	21.886	20.711	2	0.045823	17136	160511_QHF_FH_JSI12i_2	44.318	24.531			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7225200	0	7225200	0	0	0	0	0	0	0	0	0	7225200	0	7225200	31388	4418	29703	194335	262837	262837			1	
LISGEEHFSSKK	2	Unmodified	1360.6987	0.69867961	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			16.663	15.652	3	0.020505	12611	160511_QHF_FH_JSI10i_3	36	21.058			0.30417	0.35252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30417	0.35252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12702000	10026000	2676100	0	0	0	12702000	10026000	2676100	0	0	0	0	0	0	31389	4418	29704	194336	262838	262838			1	
LISGEYIGALAMSEPNAGSDVVSMK	1	Unmodified	2538.2346	0.23457591	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		94.16	93.928	3	1.1421E-06	82422	160511_QHF_FH_JSI9i_2	64.152	57.274			0.91103	0.97603	28.789	4	0	Median	1.0776	0.9401	NaN	1	0	Median	0.63968	0.75415	42.346	2	0	Median	0.9941	1.0133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108370000	60923000	47446000	19093000	9817600	9275700	61159000	37047000	24112000	28116000	14058000	14059000	0	0	0	31390	1277	29705	194337;194338;194339;194340	262839;262840;262841;262842	262839			4	
LISGLPSLNHPVEPK	1	Unmodified	1599.8984	0.89844205	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	59.478	58.864	2;3	5.7346E-05	50547	160511_QHF_FH_JSI12i_3	77.062	47.295			0.95679	0.94548	5.5365	5	0	Median	1.0379	0.90023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95949	0.94414	9.3074	2	0	Median	0.90905	0.9623	2.4948	2	0	Median	818050000	400030000	418020000	58252000	27428000	30824000	0	0	0	373480000	186120000	187360000	386320000	186490000	199830000	31391	2592	29706	194341;194342;194343;194344;194345;194346;194347	262843;262844;262845;262846;262847;262848;262849;262850;262851;262852	262852			10	
LISGWVSR	0	Unmodified	916.51305	0.51305109	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.41			5					1	4	3	2	3	2	46.2	41.088	2	0.0026127	22591	160513_QHF_FH_JSI10Kac_6	89.752	39.633			1.0428	1.0745	33.334	10	0	Median	0.93286	0.75772	60.244	3	0	Plateau	0.83251	0.97666	8.1635	2	0	Median	1.5284	1.4314	16.919	3	0	Plateau	0.93142	0.96839	15.585	2	0	Median	1421300000	727850000	693450000	402290000	216670000	185620000	353190000	203320000	149870000	457210000	216480000	240720000	208610000	91376000	117230000	31392	231	29707	194348;194349;194350;194351;194352;194353;194354;194355;194356;194357	262853;262854;262855;262856;262857;262858;262859;262860;262861;262862	262862			10	
LISIHIK	1	Unmodified	822.53272	0.5327239	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	16	0									4	1	1	1	1	48.319	39.016	2	0.041828	21350	160513_QHF_FH_JSI11Kac_6	56.091	20.458			1.0231	1.0418	21.859	4	0	Median	1.2415	1.0784	NaN	1	0	Median	1.1214	1.2963	NaN	1	0	Median	0.78482	0.76522	NaN	1	0	Median	0.93342	1.0063	NaN	1	0	Median	145600000	70111000	75493000	37627000	19857000	17770000	54197000	26268000	27930000	32489000	13907000	18582000	21291000	10080000	11211000	31393	3860	29708	194358;194359;194360;194361	262863;262864	262863			2	
LISLFQAMK	1	Unmodified	1049.5943	0.59433788	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	78.687	77.819	2	7.2092E-06	64051	160511_QHF_FH_JSI9i_3	131.06	85.344			1.6432	1.7452	105.4	7	7	Median	1.0396	0.8438	102.77	2	2	Median	0.72108	0.82257	116.29	2	2	Median	4.6582	4.3119	NaN	1	1	Median	1.4156	1.4558	142.11	2	2	Median	1676300000	667380000	1008900000	370310000	166760000	203550000	322750000	179340000	143410000	221830000	58683000	163140000	761410000	262590000	498820000	31394	2636	29709	194362;194363;194364;194365;194366;194367;194368	262865;262866;262867;262868;262869;262870;262871;262872	262868			8	
LISLFQAMKK	2	Unmodified	1177.6893	0.68930089	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			66.181	64.688	3	0.0015676	53016	160511_QHF_FH_JSI9i_3	61.353	57.199			0.44152	0.37184	NaN	1	1	Median	0.44152	0.37184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10907000	8883500	2023800	10907000	8883500	2023800	0	0	0	0	0	0	0	0	0	31395	2636	29710	194369;194370	262873;262874	262874			2	
LISLICR	0	Unmodified	873.51061	0.51060825	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		49.534	49.534	2	0.014587	43870	160511_QHF_FH_JSI11i_3	66.138	27.301			0.45991	0.43287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45991	0.43287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65955000	40045000	25910000	0	0	0	0	0	0	65955000	40045000	25910000	0	0	0	31396	155	29711	194371	262875	262875			1	
LISLLNEK	1	Unmodified	928.55933	0.55933258	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	52.173	51.921	2	0.029875	44480	160511_QHF_FH_JSI12i_3	50.04	6.7939			3.5784	3.6297	3.6418	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8465	3.7616	5.0479	2	2	Median	3.4878	3.7148	NaN	1	1	Median	275490000	81161000	194330000	0	0	0	0	0	0	201080000	56914000	144160000	74411000	24247000	50164000	31397	5161	29712	194372;194373;194374	262876;262877;262878	262878			3	
LISLPLSR	0	Unmodified	897.56475	0.56475231	4953	Q9NRG0	CHRAC1	Chromatin accessibility complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	60.966	60.139	2	0.048721	53540	160511_QHF_FH_JSI11i_3	37.558	15.427			1.0456	1.0011	7.4583	4	0	Median	1.2669	1.0327	NaN	1	0	Median	0.79884	0.909	NaN	1	0	Median	1.0468	0.97041	NaN	1	0	Median	1.0445	1.0786	NaN	1	0	Median	835660000	429490000	406170000	142190000	56535000	85653000	158260000	85833000	72427000	220160000	103690000	116470000	315060000	183430000	131620000	31398	4953	29713	194375;194376;194377;194378	262879;262880	262879			2	
LISLTDENALSGNEELTVK	1	Unmodified	2045.0528	0.052830017	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.717	12	7	3							5	7	4	6	78.229	77.609	2;3	9.6966E-210	70820	160511_QHF_FH_JSI12i_1	390.56	345.3			0.90267	0.89323	23.726	16	6	Median	1.0095	0.85392	7.1893	2	0	Median	0.66025	0.79291	21	6	3	Median	0.91891	0.88228	6.7635	3	0	Median	0.94568	0.95994	29.294	5	3	Median	1049500000	557140000	492380000	66319000	29182000	37137000	458950000	272300000	186650000	227420000	115650000	111770000	296830000	140000000	156820000	31399	1057	29714	194379;194380;194381;194382;194383;194384;194385;194386;194387;194388;194389;194390;194391;194392;194393;194394;194395;194396;194397;194398;194399;194400	262881;262882;262883;262884;262885;262886;262887;262888;262889;262890;262891;262892;262893;262894;262895;262896;262897;262898;262899;262900;262901;262902;262903;262904;262905;262906;262907;262908;262909;262910;262911;262912;262913;262914;262915;262916;262917;262918;262919;262920;262921;262922;262923;262924;262925	262896			45	
LISPESTVMLLEAQAATGGIIDPHRNEK	1	Unmodified	2989.5543	0.55427056	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	3	2	3	101.14	101.1	3;4;5	2.0439E-36	87743	160511_QHF_FH_JSI12i_3	163.16	155.76			1.0706	1.0999	26.51	9	2	Median	1.0294	0.8863	NaN	1	0	Median	1.1186	1.4093	34.255	3	1	Median	1.2954	1.2221	6.8112	2	1	Median	0.85818	0.86041	16.867	3	0	Median	4028800000	1841500000	2187300000	34216000	18132000	16084000	477010000	209650000	267360000	1681000000	643600000	1037400000	1836500000	970060000	866480000	31400	1085	29715	194401;194402;194403;194404;194405;194406;194407;194408;194409	262926;262927;262928;262929;262930;262931;262932;262933;262934	262931			8	
LISPYKK	2	Unmodified	847.51674	0.51673948	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	15.697	15.094	2;3	0.023654	12181	160511_QHF_FH_JSI10i_3	33.797	15.761			1.1266	1.0066	16.096	5	1	Median	1.2426	1.0066	NaN	1	0	Median	1.13	1.2939	0.57545	2	0	Median	1.0422	0.99652	NaN	1	1	Median	0.9096	0.9155	NaN	1	0	Median	728130000	375130000	353000000	181490000	89668000	91824000	205710000	117480000	88239000	167150000	86447000	80698000	173780000	81539000	92243000	31401	220	29716	194410;194411;194412;194413;194414	262935;262936;262937;262938;262939;262940	262936			6	
LISQDIHSNTYNYK	1	Unmodified	1694.8264	0.82639932	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	5.4		9							2	3	3	3	2	35.462	33.564	2;3	2.7251E-07	28572	160511_QHF_FH_JSI11i_2	135.02	117.22			1.0424	1.05	24.81	9	2	Median	1.6793	1.475	27.347	2	1	Median	0.76011	0.92694	17.632	2	1	Median	1.0424	1.0467	7.9936	3	0	Plateau	0.77536	0.84881	10.235	2	0	Median	750560000	394810000	355750000	147720000	74903000	72820000	209440000	120300000	89145000	258210000	131660000	126550000	135180000	67940000	67238000	31402	4021	29717	194415;194416;194417;194418;194419;194420;194421;194422;194423;194424;194425	262941;262942;262943;262944;262945;262946;262947;262948;262949;262950;262951;262952;262953;262954	262947			14	
LISQGTIEESMLK	1	Unmodified	1447.7592	0.75923095	4726	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	63.485	62.68	2	0.0002646	54508	160511_QHF_FH_JSI11i_2	101.39	61.771			0.74638	0.81981	15.962	4	4	Median	NaN	NaN	NaN	0	0	Median	0.63124	0.77185	NaN	1	1	Median	0.83113	0.82685	26.285	2	2	Median	0.80528	0.87074	NaN	1	1	Median	142890000	81418000	61472000	0	0	0	38326000	23799000	14527000	61379000	33905000	27474000	43184000	23713000	19471000	31403	4726	29718	194426;194427;194428;194429	262955;262956;262957;262958	262956			4	
LISQIVSSITASLR	0	Unmodified	1486.8719	0.87189295	2073;4359;2074	P68363;Q9H853;P68366;Q9BQE3	TUBA1B;TUBA4B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.71	7	16	15						23	16	17	15	13	96.343	93.297	2;3	4.0548E-105	45323	160513_QHF_FH_JSI11Kac_6	276.95	216.36			0.5806	0.62063	153.8	52	45	Median	0.83847	0.7204	149.61	15	12	Median	0.39278	0.4629	163.4	16	14	Median	0.54518	0.52446	150.41	14	12	Median	2.6864	2.8002	176.56	7	7	Median	47934000000	24813000000	23121000000	12183000000	5415600000	6767500000	27241000000	15364000000	11877000000	4936900000	2510200000	2426800000	3573600000	1523800000	2049800000	31404	2073;2074;4359	29719	194430;194431;194432;194433;194434;194435;194436;194437;194438;194439;194440;194441;194442;194443;194444;194445;194446;194447;194448;194449;194450;194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477;194478;194479;194480;194481;194482;194483;194484;194485;194486;194487;194488;194489;194490	262959;262960;262961;262962;262963;262964;262965;262966;262967;262968;262969;262970;262971;262972;262973;262974;262975;262976;262977;262978;262979;262980;262981;262982;262983;262984;262985;262986;262987;262988;262989;262990;262991;262992;262993;262994;262995;262996;262997;262998;262999;263000;263001;263002;263003;263004;263005;263006;263007;263008;263009;263010;263011;263012;263013;263014;263015;263016;263017;263018;263019;263020;263021;263022	262975			61	
LISQLEQEDK	1	Unmodified	1201.619	0.6190323	3574	Q8N988	ZNF557	Zinc finger protein 557	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								3	3	4	4	10.559	10.158	2	0.00041204	8142	160511_QHF_FH_JSI11i_1	75.378	45.905			1.0165	1.0717	34.256	13	4	Median	1.2828	1.0387	56.735	3	2	Median	1.0083	1.1697	7.322	3	0	Plateau	1.1404	1.0882	15.415	3	1	Median	0.97679	1.0133	48.146	4	1	Median	650390000	321430000	328960000	112940000	46390000	66548000	154830000	80844000	73991000	171920000	83512000	88409000	210700000	110680000	100010000	31405	3574	29720	194491;194492;194493;194494;194495;194496;194497;194498;194499;194500;194501;194502;194503;194504	263023;263024;263025;263026;263027;263028;263029;263030;263031;263032;263033;263034;263035;263036;263037;263038;263039;263040;263041;263042;263043	263024			21	
LISQQKAFFAK	2	Acetyl (K)	1321.7394	0.73942221	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5		3	2	2	67.223	57.388	2	3.0287E-10	31499	160513_QHF_FH_JSI10Kac_6	121.73	71.693			0.30567	0.29585	76.972	4	1	Median	NaN	NaN	NaN	0	0	Median	0.79638	0.94761	NaN	1	0	Median	0.30567	0.29585	3.8955	2	0	Median	0.13709	0.14831	NaN	1	1	Median	79919000	57353000	22567000	0	0	0	10140000	3258200	6881600	62424000	49389000	13035000	7355200	4705000	2650300	31406	4321	29721	194505;194506;194507;194508;194509;194510;194511	263044;263045;263046;263047;263048;263049;263050	263049	3131		7	
LISSDGHEFIVK	1	Unmodified	1343.7085	0.70851601	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		11	10					2	3	9	4	6	7	49.218	46.514	2;3	1.3877E-11	40461	160511_QHF_FH_JSI10i_2	149.38	138.17			1.2288	1.3041	55.188	25	17	Median	0.99084	0.85158	68.711	9	6	Median	1.2632	1.4478	34.36	4	3	Median	2.3886	2.3246	53.604	5	4	Median	0.98977	1.1149	51.356	7	4	Median	7004300000	3089000000	3915200000	1420900000	589570000	831370000	1375500000	633250000	742200000	2049200000	815690000	1233500000	2158700000	1050500000	1108200000	31407	2658	29722	194512;194513;194514;194515;194516;194517;194518;194519;194520;194521;194522;194523;194524;194525;194526;194527;194528;194529;194530;194531;194532;194533;194534;194535;194536;194537	263051;263052;263053;263054;263055;263056;263057;263058;263059;263060;263061;263062;263063;263064;263065;263066;263067;263068;263069;263070;263071;263072;263073;263074;263075;263076;263077;263078;263079;263080;263081;263082;263083;263084	263079			34	
LISSDGHEFIVKR	1	Acetyl (K)	1541.8202	0.82019173	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.471								3	6		3	4	2	58.976	48.967	2;3	6.8071E-09	26431	160513_QHF_FH_JSI11Kac_6	122.51	96.572			0.28822	0.28328	109.63	5	1	Median	NaN	NaN	NaN	0	0	Median	1.4982	1.7803	29.549	2	0	Median	0.2764	0.26573	9.0429	2	0	Median	0.19513	0.21358	NaN	1	1	Median	187400000	129640000	57760000	0	0	0	71307000	34701000	36606000	101210000	82494000	18719000	14881000	12446000	2434900	31408	2658	29723	194538;194539;194540;194541;194542;194543;194544;194545;194546	263085;263086;263087;263088;263089;263090;263091;263092;263093;263094;263095	263088	2617		11	
LISSLLR	0	Unmodified	800.51199	0.51198846	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	46.673	45.718	2	0.030052	39337	160511_QHF_FH_JSI12i_2	52.299	0			0.74382	0.77469	6.3735	6	0	Median	0.96287	0.81297	NaN	1	0	Median	0.68586	0.82838	10.476	2	0	Median	0.72687	0.74596	NaN	1	0	Median	0.72311	0.77469	0.8901	2	0	Median	824890000	435660000	389230000	94126000	43768000	50358000	305660000	154210000	151450000	76039000	31606000	44434000	349070000	206080000	142990000	31409	4348	29724	194547;194548;194549;194550;194551;194552	263096;263097;263098	263096			3	
LISSTESELQQSYAK	1	Unmodified	1682.8363	0.8362953	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.889	44.244	2	3.7459E-21	40222	160511_QHF_FH_JSI12i_1	136.7	93.391			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31410	302	29725	194553	263099	263099			1	
LISTLIYK	1	Unmodified	949.58482	0.58481905	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.51		1						3	4	4	1	2	1	63.173	54.587	2	0.0027547	29533	160513_QHF_FH_JSI11Kac_6	89.142	89.142			0.93608	0.97767	82.147	7	4	Median	0.44788	0.38117	107.61	4	4	Median	NaN	NaN	NaN	0	0	Median	1.192	1.1524	8.4986	2	0	Median	0.93608	0.97767	NaN	1	0	Median	463710000	229620000	234100000	289670000	150590000	139080000	0	0	0	140240000	60856000	79380000	33810000	18170000	15639000	31411	231	29726	194554;194555;194556;194557;194558;194559;194560;194561	263100;263101;263102;263103;263104;263105;263106;263107;263108	263102			9	
LISTMPGIHLSPEQQQQQLQSLR	0	Unmodified	2631.3803	0.38026936	5064	Q9NWA0	MED9	Mediator of RNA polymerase II transcription subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							1	2		1	74.276	73.452	3	9.3625E-16	63828	160511_QHF_FH_JSI12i_3	126.51	112.64			0.95588	1.1014	25.817	4	0	Median	1.5583	1.3634	NaN	1	0	Median	0.92061	1.1014	24.471	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80931	0.80675	NaN	1	0	Median	157790000	77607000	80187000	32205000	13086000	19120000	71825000	36941000	34883000	0	0	0	53764000	27581000	26184000	31412	5064	29727	194562;194563;194564;194565	263109;263110;263111;263112;263113;263114;263115;263116;263117	263117			9	
LISTVSKK	2	Unmodified	874.54877	0.54876789	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.235	9.3326	3	0.036367	6704	160511_QHF_FH_JSI12i_3	30.564	5.0048			1.5709	1.5723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5709	1.5723	NaN	1	1	Median	102910000	53513000	49399000	0	0	0	0	0	0	0	0	0	102910000	53513000	49399000	31413	5577	29728	194566	263118	263118			1	
LISWSGNYQK	1	Unmodified	1194.6033	0.60332266	131	O00423	EML1	Echinoderm microtubule-associated protein-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	43.909	43.829	2	0.00031035	38646	160511_QHF_FH_JSI11i_3	90.657	51.865			0.96887	0.91578	25.756	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1804	1.1125	27.519	2	2	Median	0.82652	0.83057	NaN	1	1	Median	97706000	47456000	50250000	0	0	0	0	0	0	45239000	20214000	25024000	52467000	27242000	25226000	31414	131	29729	194567;194568;194569	263119;263120;263121	263120			3	
LISWYDNEFGYSNR	0	Unmodified	1762.7951	0.79509919	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.13	11	27	28					5	9	14	18	25	23	77.262	74.895	2;3	1.4418E-132	38193	160513_QHF_FH_JSI11Kac_6	275.95	264.22			1.0324	1.0089	30.122	65	21	Median	1.1879	1.0324	43.005	14	6	Median	0.87292	1.0024	19.72	13	1	Median	1.059	1.0265	33.367	20	8	Median	0.94615	0.99727	19.985	18	6	Median	146040000000	66399000000	79640000000	32619000000	14543000000	18076000000	21328000000	10945000000	10384000000	40149000000	17419000000	22730000000	51942000000	23492000000	28450000000	31415	812	29730	194570;194571;194572;194573;194574;194575;194576;194577;194578;194579;194580;194581;194582;194583;194584;194585;194586;194587;194588;194589;194590;194591;194592;194593;194594;194595;194596;194597;194598;194599;194600;194601;194602;194603;194604;194605;194606;194607;194608;194609;194610;194611;194612;194613;194614;194615;194616;194617;194618;194619;194620;194621;194622;194623;194624;194625;194626;194627;194628;194629;194630;194631;194632;194633;194634;194635;194636;194637;194638;194639;194640;194641;194642;194643;194644;194645;194646;194647;194648;194649	263122;263123;263124;263125;263126;263127;263128;263129;263130;263131;263132;263133;263134;263135;263136;263137;263138;263139;263140;263141;263142;263143;263144;263145;263146;263147;263148;263149;263150;263151;263152;263153;263154;263155;263156;263157;263158;263159;263160;263161;263162;263163;263164;263165;263166;263167;263168;263169;263170;263171;263172;263173;263174;263175;263176;263177;263178;263179;263180;263181;263182;263183;263184;263185;263186;263187;263188;263189;263190;263191;263192;263193;263194;263195;263196;263197;263198;263199;263200;263201;263202;263203;263204;263205;263206;263207;263208;263209;263210;263211;263212;263213;263214;263215;263216;263217;263218;263219;263220;263221;263222;263223;263224;263225;263226;263227;263228;263229;263230;263231;263232;263233;263234;263235;263236;263237;263238;263239;263240;263241;263242;263243;263244;263245;263246;263247;263248;263249;263250;263251;263252	263171			131	
LISWYDNEFGYSNRVVDLMAHMASK	1	Unmodified	2945.384	0.38403411	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	92.469	84.462	4	3.8913E-48	49139	160513_QHF_FH_JSI10Kac_6	220.5	199.21			0.36459	0.38954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36459	0.38954	NaN	1	0	Median	308160000	258680000	49477000	37543000	0	37543000	226790000	226790000	0	0	0	0	43830000	31896000	11934000	31416	812	29731	194650;194651;194652	263253;263254;263255	263255			3	
LISWYDNEFGYSNRVVDLMAHMASKE	1	Unmodified	3074.4266	0.42662721	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	93	84.993	4	6.512E-39	49549	160513_QHF_FH_JSI10Kac_6	212.97	203.39			0.16529	0.18884	137.04	3	1	Plateau	2.3838	2.0832	NaN	1	0	Median	0.11749	0.13938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34698	0.36649	NaN	1	0	Median	478360000	379150000	99211000	76892000	26305000	50586000	218570000	207830000	10741000	0	0	0	182890000	145010000	37884000	31417	812	29732	194653;194654;194655	263256;263257;263258	263258			3	
LISYSYMVR	0	Unmodified	1130.5794	0.57941609	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.82	6.42		1	4					2	4	3	4	2	2	58.869	53.177	2	4.7665E-05	28254	160513_QHF_FH_JSI9Kac_6	121.99	99.858			1.104	1.1273	14.046	11	1	Median	1.3573	1.1785	10.371	3	0	Median	0.92319	1.1114	8.6629	4	1	Median	1.1242	1.0781	24.349	2	0	Median	1.0272	1.0748	25.861	2	0	Median	2986500000	1356500000	1630000000	474120000	194130000	279990000	1127100000	580060000	547070000	788780000	338710000	450080000	596510000	243630000	352880000	31418	862	29733	194656;194657;194658;194659;194660;194661;194662;194663;194664;194665;194666	263259;263260;263261;263262;263263;263264;263265;263266;263267;263268;263269;263270;263271;263272;263273	263269			15	
LISYSYMVR	0	Oxidation (M)	1146.5743	0.57433072	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	1	2	51.706	41.876	2	0.0028076	21667	160513_QHF_FH_JSI12Kac_5	73.248	73.248			0.93358	1.0948	16.888	7	0	Median	1.3135	1.1263	4.0115	2	0	Median	0.91502	1.0898	3.0109	2	0	Median	0.91421	0.83892	NaN	1	0	Median	1.0936	1.1883	28.823	2	0	Median	313080000	155440000	157650000	108880000	51356000	57523000	95266000	53210000	42056000	58012000	26943000	31069000	50926000	23929000	26997000	31419	862	29733	194667;194668;194669;194670;194671;194672;194673	263274;263275;263276;263277;263278;263279;263280;263281;263282	263276		396	9	
LITAADTTAEQR	0	Unmodified	1288.6623	0.6622941	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	23.273	22.784	2	4.1899E-05	19769	160511_QHF_FH_JSI11i_1	102.06	64.87			1.2126	1.1408	48.053	5	1	Median	1.4176	1.1408	NaN	1	0	Median	1.0175	1.1834	92.53	2	1	Median	0.92468	0.8951	NaN	1	0	Median	1.2126	1.2428	NaN	1	0	Median	273740000	120810000	152920000	60436000	22385000	38051000	63655000	33323000	30332000	52186000	22059000	30127000	97459000	43045000	54414000	31420	4900	29734	194674;194675;194676;194677;194678	263283;263284;263285;263286;263287;263288;263289;263290;263291	263283			9	
LITAANFCQNGK	1	Unmodified	1335.6605	0.66051996	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	40.638	40.116	2	3.9203E-15	35337	160511_QHF_FH_JSI11i_3	142.92	108.67			0.93064	1.6151	33.644	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93064	0.85459	NaN	1	1	Median	1.1959	1.2838	34.054	2	0	Median	139570000	66064000	73501000	0	0	0	0	0	0	40896000	21390000	19506000	98669000	44674000	53995000	31421	2902	29735	194679;194680;194681;194682	263292;263293;263294	263293			3	
LITASETGEQLISR	0	Unmodified	1516.8097	0.80968662	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.955	52.577	2	0.016045	45038	160511_QHF_FH_JSI12i_2	44.765	29.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31422	3974	29736	194683	263295	263295			1	
LITAVVMK	1	Unmodified	873.53576	0.53576037	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.31		3	4				1	3	2	2	5	4	2	51.229	46.077	2	0.002719	25273	160513_QHF_FH_JSI10Kac_6	89.296	33.285			0.95251	0.98948	23.008	13	7	Median	1.3647	1.1381	30.425	2	2	Median	0.95251	1.139	20.694	5	2	Median	0.96577	0.95141	18.391	4	2	Median	0.75561	0.79371	4.325	2	1	Median	1431100000	804910000	626170000	271380000	136830000	134550000	428350000	253740000	174610000	601140000	327200000	273940000	130210000	87131000	43074000	31423	636	29737	194684;194685;194686;194687;194688;194689;194690;194691;194692;194693;194694;194695;194696	263296;263297;263298;263299;263300;263301;263302;263303;263304;263305;263306;263307;263308;263309;263310	263309			15	
LITAVVMK	1	Oxidation (M)	889.53067	0.53067499	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		41.563	32.21	2	0.033909	17698	160513_QHF_FH_JSI11Kac_6	45.952	10.072			1.2014	1.0814	1.0944	2	0	Median	1.3138	1.0898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0985	1.0731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12538000	5921400	6616500	6076800	2807900	3268900	0	0	0	6461200	3113500	3347600	0	0	0	31424	636	29737	194697;194698	263311	263311			1	
LITDEFVK	1	Unmodified	963.5277	0.5276981	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	no	no	0	0	0	0		By MS/MS			1	0	1										1			50.948	50.533	2	0.031143	45452	160511_QHF_FH_JSI10i_1	41.429	15.693			0.57474	0.68677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57474	0.68677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130320000	74812000	55510000	0	0	0	130320000	74812000	55510000	0	0	0	0	0	0	31425	5436	29738	194699	263312	263312			1	
LITDLQDQNQK	1	Unmodified	1314.6779	0.67794416	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.285	29.687	2	6.8315E-13	26234	160511_QHF_FH_JSI10i_1	163.94	143.07			0.70399	0.81658	27.297	4	1	Linear	0.54536	0.45231	NaN	1	1	Median	0.70427	0.80695	NaN	1	0	Median	0.7037	0.69569	NaN	1	0	Median	0.76441	0.80392	NaN	1	0	Median	1062600000	605320000	457250000	192480000	114820000	77665000	321950000	186920000	135030000	228810000	140560000	88243000	319340000	163020000	156320000	31426	1400	29739	194700;194701;194702;194703	263313;263314;263315;263316;263317;263318;263319	263317			7	
LITEDVQGK	1	Unmodified	1001.5393	0.53932542	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.87	4	2	1			3	2			3	5	2	2	25.826	20.963	2	4.9403E-08	20351	160511_QHF_FH_JSI10i_1	144.38	81.533			0.89926	0.9104	27.698	12	1	Median	1.1635	0.97487	44.819	3	1	Plateau	0.74688	0.89163	23.944	5	0	Median	0.91372	0.89431	5.9028	2	0	Median	0.90782	0.96826	28.086	2	0	Median	14239000000	6517100000	7721600000	3231400000	1342800000	1888500000	3746600000	1967600000	1779000000	3243100000	1209400000	2033700000	4017600000	1997200000	2020400000	31427	1948	29740	194704;194705;194706;194707;194708;194709;194710;194711;194712;194713;194714;194715	263320;263321;263322;263323;263324;263325;263326;263327;263328;263329;263330;263331;263332;263333;263334;263335;263336;263337;263338	263329			19	
LITEGASK	1	Unmodified	817.45453	0.45453316	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	4.34	2	4					1			1	1	3	2	11.752	10.307	2	0.0027547	6558	160513_QHF_FH_JSI11Kac_4	89.142	12.296			1.0362	0.95058	22.922	7	0	Median	1.0362	0.89503	NaN	1	0	Median	0.53633	0.65462	NaN	1	0	Median	1.1061	1.0761	24.376	3	0	Median	0.96341	1.0576	15.089	2	0	Median	1293500000	713420000	580070000	122130000	62502000	59629000	124210000	83370000	40839000	557190000	288660000	268530000	489960000	278890000	211070000	31428	1698	29741	194716;194717;194718;194719;194720;194721;194722	263339;263340;263341;263342;263343;263344	263342			6	
LITEPAEIMA	0	Unmodified	1086.5631	0.56309733	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.444	70.916	2	0.00063853	63007	160511_QHF_FH_JSI9i_1	70.67	63.021			0.83622	0.86488	8.6249	4	0	Median	1.1785	0.95646	NaN	1	0	Median	0.7063	0.83731	NaN	1	0	Median	0.91557	0.89337	NaN	1	0	Median	0.76375	0.78223	NaN	1	0	Median	306110000	154900000	151210000	82282000	34055000	48227000	58958000	31362000	27596000	95972000	51142000	44831000	68898000	38342000	30556000	31429	1491	29742	194723;194724;194725;194726	263345;263346;263347	263347			3	
LITEQELPER	0	Unmodified	1226.6507	0.65066678	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.043	38.592	2	0.0057457	32721	160511_QHF_FH_JSI12i_2	55.549	34.679			0.73376	0.69158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73376	0.69158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16272000	11788000	4484500	0	0	0	0	0	0	16272000	11788000	4484500	0	0	0	31430	3169	29743	194727;194728	263348;263349	263348			2	
LITGATSPTVLYVSGGNTQVIAYSEHR	0	Unmodified	2833.461	0.4610221	4899	Q9NPF4	OSGEP	Probable tRNA N6-adenosine threonylcarbamoyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	76.311	76.172	3	1.4454E-12	67983	160511_QHF_FH_JSI11i_3	83.362	76.331			0.78107	0.76871	6.4619	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8596	0.80465	NaN	1	1	Median	0.70972	0.73438	NaN	1	1	Median	44916000	32844000	12072000	0	0	0	0	0	0	19760000	14218000	5541900	25156000	18626000	6530600	31431	4899	29744	194729;194730;194731;194732	263350;263351;263352;263353;263354	263350			5	
LITGDFK	1	Unmodified	792.43815	0.43815481	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.408	19.899	2	0.0572	16985	160511_QHF_FH_JSI11i_1	41.502	0			0.86653	0.84762	5.7376	4	0	Median	1.0703	0.87531	NaN	1	0	Median	0.68502	0.8107	NaN	1	0	Median	0.85739	0.8208	NaN	1	0	Median	0.87576	0.91653	NaN	1	0	Median	2847700000	1549500000	1298200000	378770000	173540000	205240000	885020000	522730000	362290000	996970000	551260000	445710000	586940000	301940000	285010000	31432	303	29745	194733;194734;194735;194736	263355	263355			1	
LITGMDR	0	Unmodified	804.41637	0.41637351	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	21.505	20.788	2	0.010853	17054	160511_QHF_FH_JSI12i_2	73.039	56.112			1.5703	1.9387	28.196	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.5703	1.942	NaN	1	0	Median	1.1884	1.1744	NaN	1	1	Median	1.7036	1.8836	NaN	1	0	Median	1015800000	444330000	571520000	0	0	0	427570000	175990000	251580000	197290000	81329000	115960000	390980000	187010000	203980000	31433	3973	29746	194737;194738;194739	263356;263357;263358;263359	263357			4	
LITKDLSEPYSIYTYR	1	Acetyl (K)	2003.0252	0.025158703	2576	Q147X3	NAA30	N-alpha-acetyltransferase 30	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.493								5	7	1	3	4	4	82.09	72.954	2;3	1.1382E-231	38491	160513_QHF_FH_JSI12Kac_6	336.27	278.74			0.91599	0.92583	19.724	12	0	Median	1.0399	0.8996	NaN	1	0	Median	0.72569	0.84521	13.681	3	0	Plateau	0.94707	0.93413	10.756	4	0	Median	1.0679	1.1465	27.684	4	0	Median	692630000	373080000	319560000	115240000	64349000	50889000	238770000	139540000	99235000	238550000	115650000	122900000	100070000	53544000	46531000	31434	2576	29747	194740;194741;194742;194743;194744;194745;194746;194747;194748;194749;194750;194751	263360;263361;263362;263363;263364;263365;263366;263367;263368;263369;263370;263371;263372;263373;263374;263375;263376;263377;263378;263379	263374	2546		20	
LITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGR	1	Unmodified	3552.8213	0.82126094	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			93.767	92.76	3;4	4.7315E-07	77300	160511_QHF_FH_JSI10i_3	50.908	48.903			0.74999	0.87357	27.989	3	1	Median	1.5967	1.3658	NaN	1	0	Median	0.72353	0.84416	4.8429	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28547000	17640000	10908000	8471000	4221700	4249300	20076000	13418000	6658600	0	0	0	0	0	0	31435	419	29748	194752;194753;194754	263380;263381;263382;263383;263384	263380			5	
LITKPSEGTTLRVEDLVK	2	Unmodified	1998.1361	0.13610614	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			10							2	5	3		61.237	60.225	3;4	0.00054108	53294	160511_QHF_FH_JSI11i_3	60.034	45.34			1.0336	0.98478	58.771	9	7	Median	1.8283	1.4784	53.67	2	1	Median	0.80266	0.91495	80.971	4	4	Median	0.82967	0.78464	16.479	3	2	Median	NaN	NaN	NaN	0	0	Median	1152700000	604650000	548090000	129310000	47934000	81375000	432330000	234670000	197660000	591110000	322050000	269060000	0	0	0	31436	1695	29749	194755;194756;194757;194758;194759;194760;194761;194762;194763;194764	263385;263386;263387;263388;263389;263390;263391;263392;263393;263394;263395	263385			11	
LITLEEEMTK	1	Unmodified	1205.6213	0.62134049	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.05	5	4	5				2			3	4	4	5	57.803	55.7	2	6.1066E-14	50091	160511_QHF_FH_JSI10i_1	156.92	102.37			1.0245	1.0808	48.251	15	5	Median	1.0245	0.81661	22.279	3	0	Median	0.96552	1.1423	67.726	4	1	Median	1.0705	1.0523	65.807	4	3	Median	0.95472	1.0154	14.493	4	1	Median	10764000000	5305200000	5458300000	1750400000	692600000	1057800000	2510800000	1415700000	1095100000	3988300000	1832200000	2156100000	2514000000	1364700000	1149300000	31437	867	29750	194765;194766;194767;194768;194769;194770;194771;194772;194773;194774;194775;194776;194777;194778;194779;194780	263396;263397;263398;263399;263400;263401;263402;263403;263404;263405;263406;263407;263408;263409;263410;263411;263412;263413;263414;263415;263416;263417;263418;263419;263420;263421;263422	263409			27	
LITLEEEMTK	1	Oxidation (M)	1221.6163	0.61625511	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.6	3	2	1				1	1		3	1	1	3	41.04	37.903	2	0.00077271	33869	160511_QHF_FH_JSI10i_1	72.275	59.485			1.1126	1.1013	63.131	8	2	Median	0.56756	0.47483	88.392	3	0	Plateau	1.0219	1.2196	NaN	1	0	Median	1.3511	1.3294	NaN	1	0	Median	1.0402	1.1604	45.863	3	2	Median	820670000	427350000	393320000	224990000	138780000	86206000	225530000	102110000	123410000	224330000	107540000	116800000	145830000	78925000	66906000	31438	867	29750	194781;194782;194783;194784;194785;194786;194787;194788	263423;263424;263425;263426;263427;263428;263429;263430;263431;263432	263428		408	10	
LITNSEEIAFYNGNK	1	Unmodified	1711.8417	0.84171503	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.121	58.798	2	0.0070616	50445	160511_QHF_FH_JSI12i_2	60.434	25.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3426400	0	3426400	0	0	0	0	0	0	0	0	0	3426400	0	3426400	31439	1304	29751	194789	263433	263433			1	
LITNSEEIAFYNGNKR	1	Unmodified	1867.9428	0.94282606	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	50.38	49.746	3	2.8068E-09	43830	160511_QHF_FH_JSI11i_3	134.44	109.88			0.8993	0.89755	19.877	6	2	Median	1.0686	0.90609	NaN	1	0	Median	0.653	0.79475	20.145	2	0	Median	1.1428	1.0679	25.909	2	2	Median	0.86421	0.87057	NaN	1	0	Median	998160000	476320000	521840000	70710000	29395000	41315000	179710000	115860000	63848000	664570000	276950000	387630000	83169000	54123000	29046000	31440	1304	29752	194790;194791;194792;194793;194794;194795	263434;263435;263436;263437;263438;263439;263440	263434			7	
LITNTAEAVLQK	1	Unmodified	1299.7398	0.73981614	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	53.238	51.853	2	0.0003433	44312	160511_QHF_FH_JSI12i_2	89.827	62.696			0.87099	0.94552	45.608	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87099	0.94552	45.608	2	2	Median	51391000	26685000	24706000	0	0	0	0	0	0	0	0	0	51391000	26685000	24706000	31441	3133	29753	194796;194797	263441;263442	263441			2	
LITPAEK	1	Unmodified	770.4538	0.45380487	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		17.419	16.854	2	0.015901	14277	160511_QHF_FH_JSI10i_2	56.547	27.171			1.1391	1.0664	6.2012	2	0	Median	1.1901	1.0207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0902	1.1142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	302480000	174390000	128090000	108590000	61333000	47259000	0	0	0	193890000	113060000	80831000	0	0	0	31442	2992	29754	194798;194799;194800	263443;263444;263445	263445			3	
LITPAVVSER	0	Unmodified	1083.6288	0.62880913	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.16	4	4	4				1	1	3	4	5	4	4	47.923	44.892	2	7.3017E-11	39549	160511_QHF_FH_JSI11i_3	144.09	67.031			1.0391	1.0392	30.868	16	1	Median	1.4857	1.2274	11.141	4	0	Linear	0.88549	1.0555	14.992	4	1	Median	1.031	1.0233	22.667	4	0	Median	0.92443	0.99889	57.782	4	0	Median	19711000000	10016000000	9694900000	2639900000	1273700000	1366200000	3970600000	2105400000	1865300000	7162700000	3650100000	3512600000	5937600000	2986900000	2950700000	31443	2026	29755	194801;194802;194803;194804;194805;194806;194807;194808;194809;194810;194811;194812;194813;194814;194815;194816;194817	263446;263447;263448;263449;263450;263451;263452;263453;263454;263455;263456;263457;263458;263459;263460;263461;263462;263463;263464;263465;263466;263467;263468;263469;263470;263471;263472;263473;263474;263475;263476;263477;263478;263479;263480	263448			35	
LITPLAFALTSDNR	0	Unmodified	1530.8406	0.84059282	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				97.487	96.662	2	0.043164	78779	160511_QHF_FH_JSI9i_3	45.973	11.594			0.39955	0.34245	NaN	1	1	Median	0.39955	0.34245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7132000	5661800	1470200	7132000	5661800	1470200	0	0	0	0	0	0	0	0	0	31444	3706	29756	194818	263481	263481			1	
LITQTFSHHNQLAQK	1	Unmodified	1764.9271	0.92711641	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.19			15						8	5	5	6	7	31.243	27.404	2;3;4	1.3732E-51	22337	160511_QHF_FH_JSI9i_3	215.85	201.69			0.9202	0.92274	33.604	21	3	Median	0.88622	0.72296	18.032	5	0	Median	0.87018	1.0419	17.516	5	0	Median	1.155	1.0929	37.89	5	1	Median	0.96059	1.0118	40.286	6	2	Median	7473600000	3594300000	3879300000	2560200000	1168100000	1392100000	2155500000	1114300000	1041200000	1886800000	858480000	1028300000	871120000	453410000	417710000	31445	5497	29757	194819;194820;194821;194822;194823;194824;194825;194826;194827;194828;194829;194830;194831;194832;194833;194834;194835;194836;194837;194838;194839;194840;194841	263482;263483;263484;263485;263486;263487;263488;263489;263490;263491;263492;263493;263494;263495;263496;263497;263498;263499;263500;263501;263502;263503;263504;263505;263506;263507;263508;263509;263510;263511;263512;263513;263514;263515;263516;263517;263518;263519;263520;263521	263507			40	
LITSAHWK	1	Unmodified	954.5287	0.52870115	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			8							2	3	1	2	25.247	24.421	2;3	0.0015275	20199	160511_QHF_FH_JSI10i_3	56.729	34.643			1.1104	1.0917	89.603	8	3	Median	1.6116	1.3254	151.44	2	1	Median	2.6637	3.0761	118.67	3	2	Median	1.2332	1.1654	NaN	1	0	Median	0.88491	0.89498	18.855	2	0	Median	1227500000	576250000	651250000	258760000	94874000	163890000	256340000	116700000	139640000	211150000	80372000	130780000	501240000	284300000	216940000	31446	2947	29758	194842;194843;194844;194845;194846;194847;194848;194849	263522;263523;263524;263525;263526;263527;263528;263529	263522			8	
LITSEEERSPAK	1	Unmodified	1358.7042	0.70415892	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	14.593	14.315	3	0.0056635	11799	160511_QHF_FH_JSI10i_2	45.915	22.54			0.84027	0.96796	17.78	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90306	1.0976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78185	0.8536	NaN	1	1	Median	111250000	61216000	50030000	0	0	0	37218000	22336000	14881000	0	0	0	74028000	38879000	35149000	31447	2320	29759	194850;194851	263530;263531;263532;263533	263531			4	
LITSNTDASDGDSVALVK	1	Unmodified	1804.9054	0.9054375	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.261	50.587	2	1.3372E-98	45703	160511_QHF_FH_JSI11i_1	262.64	200.99			0.97597	0.99321	3.8952	4	1	Linear	1.1385	0.95346	NaN	1	0	Median	0.83722	0.99883	NaN	1	0	Median	1.0592	0.99343	NaN	1	0	Median	0.89924	0.91906	NaN	1	1	Median	259630000	138310000	121320000	63668000	30431000	33238000	77015000	45518000	31497000	64064000	30055000	34009000	54881000	32308000	22574000	31448	2574	29760	194852;194853;194854;194855	263534;263535;263536;263537;263538;263539;263540	263535			7	
LITTQQWLIK	1	Unmodified	1242.7336	0.73360855	778	P00846	MT-ATP6	ATP synthase subunit a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.52	3	4	4					2	4	4	5	5	3	72.098	68.414	2	2.2357E-17	35120	160513_QHF_FH_JSI12Kac_6	166.07	102.5			0.92431	1.0286	16.758	17	2	Median	1.2748	1.0732	16.96	4	0	Median	0.79634	0.94449	12.341	5	0	Median	1.0854	1.0438	22.498	5	2	Median	0.8763	0.99569	12.691	3	0	Median	3551700000	1745600000	1806100000	658740000	285350000	373380000	791960000	427770000	364190000	1349400000	662670000	686680000	751680000	369800000	381880000	31449	778	29761	194856;194857;194858;194859;194860;194861;194862;194863;194864;194865;194866;194867;194868;194869;194870;194871;194872	263541;263542;263543;263544;263545;263546;263547;263548;263549;263550;263551;263552;263553;263554;263555;263556;263557;263558;263559;263560;263561;263562;263563;263564;263565;263566	263564			26	
LITTQQWLIKLTSK	2	Acetyl (K)	1714.0029	0.0029071185	778	P00846	MT-ATP6	ATP synthase subunit a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.268	82.896	3	0.00018181	46611	160513_QHF_FH_JSI11Kac_6	98.694	80.893			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18454000	18454000	0	0	0	0	0	0	0	18454000	18454000	0	0	0	0	31450	778	29762	194873	263567	263567	404		1	
LITVALHR	0	Unmodified	921.57599	0.5759857	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13.4	5.2			1						4	1	2	1	1	42.421	34.749	3	0.0015016	18595	160513_QHF_FH_JSI9Kac_6	70.856	14.197			0.97521	1.0565	7.8602	5	1	Median	1.2355	1.0584	NaN	1	0	Median	0.83402	0.96782	12.731	2	1	Median	1.0005	0.98313	NaN	1	0	Median	0.97521	1.0565	NaN	1	0	Median	113470000	55410000	58065000	20640000	8844400	11795000	60536000	29996000	30540000	20409000	10904000	9504700	11891000	5666000	6224900	31451	3560	29763	194874;194875;194876;194877;194878	263568;263569;263570;263571;263572;263573;263574	263572			7	
LITVNTPDLVLFVGEALVGNEAVDQLVK	1	Unmodified	2965.6376	0.63758948	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		3	2						3	1	2	3	2	103.33	100.23	3	1.2817E-49	91650	160511_QHF_FH_JSI11i_2	187.51	176.3			0.99976	1.0315	21.356	6	5	Median	1.238	1.0623	NaN	1	1	Median	0.95596	1.1439	NaN	1	1	Median	0.9604	0.95106	4.3783	3	2	Median	1.5373	1.6465	NaN	1	1	Median	577500000	336280000	241220000	34271000	10202000	24069000	324550000	214350000	110200000	173340000	87872000	85472000	45332000	23850000	21482000	31452	899	29764	194879;194880;194881;194882;194883;194884;194885;194886	263575;263576;263577;263578;263579;263580;263581;263582;263583	263579			9	
LITWLNK	1	Unmodified	886.52764	0.52763852	3145	Q6UVJ0	SASS6	Spindle assembly abnormal protein 6 homolog	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.218	56.386	2	0.023698	48357	160511_QHF_FH_JSI12i_3	55.441	28.479			1.1884	1.0254	11.516	4	0	Median	1.2159	0.97151	NaN	1	0	Median	0.8763	0.97637	NaN	1	0	Median	1.1674	1.0769	NaN	1	0	Median	1.2097	1.2423	NaN	1	0	Median	144210000	61750000	82463000	29825000	14021000	15803000	20230000	9467300	10763000	28577000	10978000	17598000	65582000	27283000	38299000	31453	3145	29765	194887;194888;194889;194890	263584	263584			1	
LITYLDQTTQK	1	Unmodified	1322.7082	0.70818166	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		46.917	46.103	2	0.00053258	40992	160511_QHF_FH_JSI9i_1	85.355	58.101			1.9894	1.797	13.951	2	2	Median	1.9119	1.6282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.07	1.9833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75577000	25060000	50517000	27979000	9772400	18207000	0	0	0	47597000	15287000	32310000	0	0	0	31454	2457	29766	194891;194892	263585;263586	263586			2	
LIVALMK	1	Unmodified	786.50373	0.50373196	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.38		7	8					3	6	7	7	6	4	62.383	58.284	1;2	0.0027022	31685	160513_QHF_FH_JSI11Kac_6	98.03	0			1.0665	1.0204	61.71	23	14	Median	1.2785	1.0764	68.957	6	4	Median	0.93472	1.1111	62.572	7	4	Median	1.1457	1.1059	62.845	6	4	Median	0.79851	0.87358	73.827	4	2	Median	23615000000	10733000000	12882000000	4347300000	1721600000	2625700000	5836600000	3052900000	2783600000	7782200000	3571900000	4210200000	5648800000	2386900000	3262000000	31455	916	29767	194893;194894;194895;194896;194897;194898;194899;194900;194901;194902;194903;194904;194905;194906;194907;194908;194909;194910;194911;194912;194913;194914;194915;194916	263587;263588;263589;263590;263591;263592;263593;263594;263595;263596;263597;263598;263599;263600;263601;263602;263603;263604;263605;263606;263607;263608;263609;263610;263611;263612;263613;263614;263615;263616;263617;263618;263619;263620;263621;263622;263623;263624;263625	263601			39	
LIVALMYPPYR	0	Unmodified	1334.7421	0.74206475	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	84.357	75.327	2;3	0.0011748	41202	160513_QHF_FH_JSI9Kac_6	79.809	57.23			0.80312	0.77038	10.972	2	0	Median	0.95195	0.83253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67757	0.71287	NaN	1	0	Median	443900000	228620000	215270000	337560000	165640000	171920000	0	0	0	0	0	0	106340000	62989000	43350000	31456	2986	29768	194917;194918;194919	263626;263627	263627			2	
LIVALMYPPYR	0	Oxidation (M)	1350.737	0.73697937	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	1	0	By MS/MS			By MS/MS	16	0									3	1			2	79.545	70.509	2	0.0022735	37289	160513_QHF_FH_JSI12Kac_6	78.77	27.892			0.49561	0.48169	26.938	2	1	Median	0.68059	0.58277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3609	0.39815	NaN	1	1	Median	30566000	21097000	9468400	20064000	13326000	6738000	0	0	0	0	0	0	10502000	7771300	2730300	31457	2986	29768	194920;194921;194922	263628;263629;263630	263629		2178	2	
LIVALMYPPYRYEAK	1	Unmodified	1825.9801	0.98006319	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.078	71.948	2;3	8.5819E-16	40591	160513_QHF_FH_JSI10Kac_6	142.07	103.67			0.17873	0.18961	33.196	3	3	Median	0.16673	0.14172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28714	0.27483	NaN	1	1	Median	0.17873	0.18961	NaN	1	1	Median	1515000000	1329700000	185300000	687160000	634650000	52517000	0	0	0	479120000	389500000	89615000	348730000	305560000	43166000	31458	2986	29769	194923;194924;194925;194926	263631;263632;263633;263634	263634			4	
LIVAPDADAR	0	Unmodified	1039.5662	0.56620887	3642	Q8NEW0	SLC30A7	Zinc transporter 7	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			34.95	34.598	2	0.0016363	30923	160511_QHF_FH_JSI10i_1	84.743	43.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31459	3642	29770	194927	263635	263635			1	
LIVDEAINEDNSVVSLSQPK	1	Unmodified	2169.1165	0.11649291	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.782	8	1	2							3	3	2	3	77.567	76.97	2;3	2.7385E-118	69960	160511_QHF_FH_JSI11i_1	275.23	245.68			0.95851	0.94715	13.142	10	2	Median	1.2353	1.0318	15.804	3	1	Median	0.74755	0.88552	13.867	3	1	Plateau	0.97749	0.94378	1.1713	2	0	Median	0.828	0.87525	1.1097	2	0	Median	3303700000	1817200000	1486500000	470970000	255320000	215660000	1174500000	701670000	472810000	807260000	499160000	308090000	851020000	361080000	489940000	31460	1846	29771	194928;194929;194930;194931;194932;194933;194934;194935;194936;194937;194938	263636;263637;263638;263639;263640;263641;263642;263643;263644;263645;263646;263647;263648;263649;263650;263651;263652;263653;263654;263655;263656;263657;263658;263659	263638			24	
LIVDHNIADYMTAK	1	Unmodified	1602.8076	0.80757813	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							2	4	4	5	67.347	66.655	2;3	8.3829E-15	59417	160511_QHF_FH_JSI11i_3	180.2	127.41			1.1155	1.113	30.937	15	6	Median	1.1287	0.97974	3.7075	2	0	Median	0.75318	0.91819	37.022	4	3	Median	1.2241	1.1758	32.117	4	1	Median	1.3454	1.3882	22.418	5	2	Median	1263900000	607950000	655990000	169180000	80759000	88417000	271500000	161490000	110010000	455450000	191940000	263520000	367820000	173760000	194050000	31461	3101	29772	194939;194940;194941;194942;194943;194944;194945;194946;194947;194948;194949;194950;194951;194952;194953	263660;263661;263662;263663;263664;263665;263666;263667;263668;263669;263670;263671;263672;263673;263674;263675;263676;263677;263678;263679;263680;263681;263682;263683;263684	263661			25	
LIVELRR	0	Unmodified	897.57599	0.5759857	4307	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.049	33.606	3	0.02516	27357	160511_QHF_FH_JSI9i_3	32.61	10.479			1.2574	1.0441	NaN	1	0	Median	1.2574	1.0441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35247000	17396000	17852000	35247000	17396000	17852000	0	0	0	0	0	0	0	0	0	31462	4307	29773	194954	263685	263685			1	
LIVENLSSR	0	Unmodified	1029.5819	0.58185893	2263;2378;2377	Q08170;Q13247;Q13243	SRSF4;SRSF6;SRSF5	Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.45	2	4	2				2	4	1	3	4	3	5	45.786	40.653	2	3.855E-05	35358	160511_QHF_FH_JSI11i_2	99.136	56.221			0.84466	0.96718	28.157	15	4	Median	1.2139	1.0493	26.161	3	0	Median	0.69586	0.84116	29.018	4	2	Median	1.0155	0.99975	26.683	3	0	Median	0.84466	0.87205	33.018	5	2	Median	6277200000	3392600000	2884600000	953640000	503180000	450470000	1371900000	862720000	509160000	1937700000	986840000	950810000	2014100000	1039900000	974180000	31463	2263;2378;2377	29774	194955;194956;194957;194958;194959;194960;194961;194962;194963;194964;194965;194966;194967;194968;194969	263686;263687;263688;263689;263690;263691;263692;263693;263694;263695;263696;263697;263698;263699;263700;263701;263702;263703;263704;263705;263706	263696			20	
LIVGTAGR	0	Unmodified	785.47594	0.4759373	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	1	3	3							2	2	2	1	21.692	20.894	2	0.0035486	17811	160511_QHF_FH_JSI9i_2	71.715	8.9998			0.77275	0.83242	20.568	7	2	Median	1.099	0.91125	26.486	2	0	Median	0.72743	0.86961	6.1809	2	1	Median	0.98417	0.93949	40.287	2	1	Median	0.71949	0.80726	NaN	1	0	Median	1605300000	704780000	900500000	348930000	158260000	190670000	386140000	220970000	165170000	760450000	267220000	493230000	109750000	58324000	51429000	31464	359	29775	194970;194971;194972;194973;194974;194975;194976	263707;263708;263709;263710	263710			4	
LIVLVPPSKPTVNIPSSATIGNR	1	Unmodified	2372.3791	0.37913037	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			80.447	74.851	3	9.3353E-05	41069	160513_QHF_FH_JSI10Kac_6	80.752	66.92			0.7205	0.85068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7205	0.85068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46914000	33771000	13143000	0	0	0	46914000	33771000	13143000	0	0	0	0	0	0	31465	5701	29776	194977	263711	263711			1	
LIVNVNDLR	0	Unmodified	1054.6135	0.61349341	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		4						4		2	3	1	2	64.642	58.746	2	0.00038973	51983	160511_QHF_FH_JSI10i_2	85.676	32.96			1.5758	1.1859	42.288	6	2	Plateau	1.4345	1.2382	NaN	1	1	Median	1.3324	1.6111	49.448	2	0	Median	1.139	1.1149	NaN	1	0	Median	0.90453	1.0191	65.139	2	1	Median	637510000	240330000	397180000	183360000	75234000	108130000	152750000	48037000	104710000	12521000	5264000	7256800	288880000	111790000	177080000	31466	1254	29777	194978;194979;194980;194981;194982;194983;194984;194985	263712;263713;263714;263715;263716;263717;263718	263716			6	
LIVPFCGHIK	1	Unmodified	1182.6583	0.65833512	2826	Q3ZCW2	LGALSL	Galectin-related protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.054	56.927	3	0.0032499	50510	160511_QHF_FH_JSI11i_3	43.512	25.918			0.99849	1.0381	16.143	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98586	0.92611	NaN	1	0	Median	1.0113	1.1636	NaN	1	0	Median	117850000	58860000	58992000	0	0	0	0	0	0	45886000	23974000	21912000	71967000	34887000	37080000	31467	2826	29778	194986;194987	263719;263720	263719			2	
LIVPPHLGYGSIGLAGLIPPDATLYFDVVLLDVWNK	1	Unmodified	3875.1277	0.12772029	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.74	97.018	4	1.5461E-31	57391	160513_QHF_FH_JSI10Kac_6	122.77	119.92			0.85095	0.99823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85095	0.99823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	198090000	108340000	89743000	0	0	0	198090000	108340000	89743000	0	0	0	0	0	0	31468	3973	29779	194988	263721;263722	263721			2	
LIVPTIMLLPLTWLSK	1	Unmodified	1837.1151	0.1151001	797	P03905	MT-ND4	NADH-ubiquinone oxidoreductase chain 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	3		1	103.5	98.58	2;3	2.7732E-06	54189	160513_QHF_FH_JSI9Kac_6	105.46	99.918			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31469	797	29780	194989;194990;194991;194992;194993	263723;263724;263725;263726;263727	263725			5	
LIVPTIMLLPLTWLSK	1	Oxidation (M)	1853.11	0.11001473	797	P03905	MT-ND4	NADH-ubiquinone oxidoreductase chain 4	yes	yes	0	0	1	0		By MS/MS	By MS/MS		16	0									2		1	1		99.979	92.408	2;3	1.673E-09	52098	160513_QHF_FH_JSI11Kac_6	122.46	89.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31470	797	29780	194994;194995	263728;263729	263728		312	2	
LIVPVLLDAAVPAYDK	1	Unmodified	1695.9811	0.98110904	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.66	101.48	3	0.058962	87420	160511_QHF_FH_JSI12i_2	32.917	21.973			2.6368	2.8887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6368	2.8887	NaN	1	0	Median	55834000	20360000	35474000	0	0	0	0	0	0	0	0	0	55834000	20360000	35474000	31471	2716	29781	194996	263730	263730			0	
LIVQPNTR	0	Unmodified	939.55016	0.55016488	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	23.924	23.246	2	0.00087398	20106	160511_QHF_FH_JSI10i_2	97.068	60.047			0.98567	1.0445	10.497	7	0	Median	1.2457	1.0807	NaN	1	0	Median	0.86272	1.0118	4.5054	2	0	Median	1.0841	1.0499	9.2335	2	0	Median	0.94373	1.0079	22.571	2	0	Median	694480000	350990000	343480000	78605000	27744000	50861000	111520000	66258000	45265000	247990000	132580000	115420000	256360000	124420000	131940000	31472	5119	29782	194997;194998;194999;195000;195001;195002;195003	263731;263732;263733;263734;263735;263736;263737;263738;263739	263737			9	
LIVSAWYNK	1	Unmodified	1092.5968	0.59678072	5341	Q9UJC3	HOOK1	Protein Hook homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	67.107	57.949	2	0.00035272	30282	160513_QHF_FH_JSI12Kac_6	98.997	51.915			1.2045	1.1071	14.426	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84249	1.0047	NaN	1	0	Median	1.2045	1.1071	NaN	1	0	Median	1.2285	1.3345	NaN	1	0	Median	98646000	44233000	54412000	0	0	0	28163000	15120000	13044000	59228000	25186000	34042000	11254000	3927200	7327100	31473	5341	29783	195004;195005;195006	263740;263741;263742;263743;263744	263742			5	
LIVTGTSIQR	0	Unmodified	1086.6397	0.63970816	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.42		4	2				1	4	3	3	5	4	2	44.635	38.59	2	0.00042294	33445	160511_QHF_FH_JSI11i_2	75.043	40.151			0.99605	1.1103	23.112	14	1	Median	1.3925	1.1807	28.735	3	0	Median	0.99233	1.159	27.311	5	1	Median	1.1338	1.1078	14.491	4	0	Median	0.78811	0.8707	28.312	2	0	Median	589900000	271860000	318040000	96087000	41072000	55014000	152620000	72149000	80467000	283100000	128990000	154110000	58091000	29646000	28445000	31474	5063	29784	195007;195008;195009;195010;195011;195012;195013;195014;195015;195016;195017;195018;195019;195020	263745;263746;263747;263748;263749;263750;263751;263752;263753;263754;263755;263756;263757;263758;263759;263760;263761;263762	263754			17	
LIVTSATMDAEK	1	Unmodified	1277.6537	0.65370325	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	44.068	43.323	2	0.001948	39049	160511_QHF_FH_JSI11i_1	58.743	38.956			0.63031	0.60166	31.586	3	1	Plateau	0.43584	0.35598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63031	0.60166	NaN	1	0	Median	0.61619	0.62754	NaN	1	0	Median	163730000	118710000	45021000	35608000	26118000	9490200	0	0	0	72648000	50203000	22446000	55474000	42389000	13085000	31475	3861	29785	195021;195022;195023	263763;263764	263763			2	
LIVVVAGQPSEVR	0	Unmodified	1365.798	0.79799972	3181	Q6ZNJ1	NBEAL2	Neurobeachin-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15	0								5		1	2	2		66.704	55.952	2	5.9481E-06	30236	160513_QHF_FH_JSI11Kac_5	108.67	68.622			1.5246	1.4663	13.09	3	3	Plateau	1.602	1.3164	NaN	1	1	Median	1.0008	1.13	NaN	1	1	Median	1.5246	1.4663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7470200	2865400	4604800	1885600	590170	1295500	2125100	975350	1149700	3459500	1299800	2159600	0	0	0	31476	3181	29786	195024;195025;195026;195027;195028	263765;263766;263767;263768;263769	263766			5	
LIVVVHACR	0	Unmodified	1065.6117	0.61171928	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	41.101	31.938	2;3	6.3065E-11	17777	160513_QHF_FH_JSI10Kac_6	151.17	136.4			1.0809	0.97869	22.636	8	1	Median	1.0809	0.90588	6.8328	2	0	Median	0.80376	0.96236	6.4799	2	0	Median	1.1161	1.0547	19.507	2	1	Median	1.3893	1.4983	8.8926	2	0	Median	738650000	346260000	392390000	77370000	31613000	45757000	337490000	175340000	162150000	235510000	110630000	124890000	88275000	28678000	59597000	31477	6	29787	195029;195030;195031;195032;195033;195034;195035;195036;195037;195038	263770;263771;263772;263773;263774;263775;263776;263777;263778;263779;263780;263781;263782;263783;263784;263785	263783			16	
LIVWDSYTTNK	1	Unmodified	1338.682	0.68196691	1101	P16520	GNB3	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			73.153	65.127	2	0.0012735	35882	160513_QHF_FH_JSI10Kac_6	82.749	33.953			0.20948	0.2113	9.3744	2	2	Median	0.23523	0.19774	NaN	1	1	Median	0.18656	0.22578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41190000	38192000	2998000	14795000	13418000	1377600	26395000	24775000	1620400	0	0	0	0	0	0	31478	1101	29788	195039;195040	263786;263787	263787			2	
LIVYLQR	0	Unmodified	903.55419	0.55418762	4430	Q9BU02	THTPA	Thiamine-triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	58.491	49.181	2	5.9744E-08	26664	160513_QHF_FH_JSI11Kac_6	145	74.735			0.62302	0.66592	32.282	4	1	Linear	1.5808	1.3602	NaN	1	1	Median	0.74643	0.88511	NaN	1	0	Median	0.65512	0.61765	NaN	1	0	Median	0.84004	0.89197	NaN	1	0	Median	223130000	119570000	103560000	44938000	17208000	27730000	72097000	39253000	32844000	75708000	46977000	28731000	30387000	16132000	14255000	31479	4430	29789	195041;195042;195043;195044	263788;263789;263790;263791	263788			4	
LIWEVWMPFVR	0	Unmodified	1474.7795	0.77951289	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.328	91.607	2	8.9009E-12	53282	160513_QHF_FH_JSI10Kac_6	172.21	115.65			1.0289	1.207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0289	1.207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172470000	87095000	85372000	0	0	0	172470000	87095000	85372000	0	0	0	0	0	0	31480	5229	29790	195045	263792	263792			1	
LIWGPYK	1	Unmodified	875.49052	0.49052473	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	3	2	2	2	54.367	53.466	2	0.016664	44806	160511_QHF_FH_JSI10i_3	66.994	66.994			1.2955	1.2225	31.834	8	3	Median	1.662	1.3783	26.657	2	1	Median	1.4333	1.7244	50.017	2	1	Median	1.4117	1.3892	38.496	2	1	Median	1.0053	1.0912	17.432	2	0	Median	2249200000	1009600000	1239600000	352890000	158340000	194550000	452410000	224340000	228080000	729400000	323180000	406220000	714530000	303760000	410770000	31481	636	29791	195046;195047;195048;195049;195050;195051;195052;195053;195054	263793;263794;263795;263796;263797;263798;263799;263800;263801;263802;263803;263804;263805;263806	263798			14	
LIWGPYKMDSK	2	Acetyl (K)	1378.6955	0.69550848	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.472	68.155	2	0.019285	37287	160513_QHF_FH_JSI11Kac_6	59.426	39.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18251000	18251000	0	0	0	0	0	0	0	18251000	18251000	0	0	0	0	31482	636	29792	195055	263807	263807	318		1	
LIWLPLR	0	Unmodified	909.58001	0.58000844	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	86.864	86.242	2	0.041241	74760	160511_QHF_FH_JSI12i_3	46.766	23.73			0.82593	0.86405	10.466	4	0	Median	1.1355	0.95776	NaN	1	0	Median	0.71394	0.85802	NaN	1	0	Median	0.9399	0.87013	NaN	1	0	Median	0.72578	0.74312	NaN	1	0	Median	48174000	26876000	21298000	10748000	5308300	5439300	7782100	4336900	3445200	13984000	7889100	6095300	15660000	9341800	6317800	31483	4997	29793	195056;195057;195058;195059	263808;263809;263810	263809			3	
LIYDTKGR	1	Acetyl (K)	1006.5447	0.54474515	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	1	0	0	1		By matching	By MS/MS		14.3	0.471							2	1			1	2		38.86	29.085	2	0.0021908	17833	160513_QHF_FH_JSI11Kac_4	98.997	49.638			0.35255	0.34826	100.02	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5689	1.8855	NaN	1	0	Median	0.33757	0.334	5.9127	2	0	Median	NaN	NaN	NaN	0	0	Median	185030000	132940000	52090000	0	0	0	30352000	14052000	16300000	154680000	118890000	35790000	0	0	0	31484	2013	29794	195060;195061;195062	263811	263811	2043		1	
LIYEKAK	2	Acetyl (K)	905.52222	0.52221879	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		38.343	28.755	2	0.027196	17482	160513_QHF_FH_JSI11Kac_4	72.138	25.768			0.25789	0.2564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25789	0.2564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73929000	61691000	12239000	0	0	0	0	0	0	73929000	61691000	12239000	0	0	0	31485	1138	29795	195063	263812	263812			1	
LIYFQLHR	0	Unmodified	1088.6131	0.61309948	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			2						12	4	5	2	3	62.737	54.743	2;3	1.1398E-16	29716	160513_QHF_FH_JSI11Kac_6	172.39	90.132			0.92618	0.88995	14.107	13	3	Median	1.0633	0.92023	13.546	4	1	Median	0.78426	0.88827	19.511	4	1	Median	1.1382	1.0864	0.35411	2	0	Median	0.85031	0.88322	6.0469	3	1	Median	17285000000	8390400000	8894300000	3034600000	1530100000	1504500000	7731000000	3783700000	3947300000	4027600000	1863900000	2163700000	2491400000	1212700000	1278700000	31486	2380	29796	195064;195065;195066;195067;195068;195069;195070;195071;195072;195073;195074;195075;195076;195077	263813;263814;263815;263816;263817;263818;263819;263820;263821;263822;263823;263824;263825;263826;263827;263828;263829;263830;263831;263832;263833;263834;263835;263836;263837;263838;263839;263840;263841	263816			29	
LIYFQLHRALK	1	Unmodified	1400.8292	0.82924027	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			61.824	53.46	4	0.0034339	29406	160513_QHF_FH_JSI10Kac_6	60.518	45.146			0.17625	0.20135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17625	0.20135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4943700	4491600	452130	0	0	0	4943700	4491600	452130	0	0	0	0	0	0	31487	2380	29797	195078	263842	263842			1	
LIYLMGDSTIR	0	Oxidation (M)	1296.6748	0.67477304	3151	Q6UWF7	NXPE4	NXPE family member 4	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	38.397	37.702	2	0.002704	32335	160511_QHF_FH_JSI12i_2	60.973	19.944			0.69164	0.78318	120.04	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90616	1.0504	NaN	1	0	Median	0.082449	0.085125	NaN	1	1	Median	0.73822	0.79982	44.485	2	0	Median	3073400000	1582600000	1490800000	0	0	0	1337300000	721770000	615490000	92945000	82350000	10595000	1643200000	778450000	864750000	31488	3151	29798	195079;195080;195081;195082	263843;263844;263845;263846;263847;263848;263849	263844		2205	7	
LIYQTLSWK	1	Unmodified	1150.6386	0.63864553	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.24	22.919	3	0.038147	18533	160511_QHF_FH_JSI9i_3	29.473	0			0.52749	0.42747	NaN	1	1	Median	0.52749	0.42747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38748000	26412000	12336000	38748000	26412000	12336000	0	0	0	0	0	0	0	0	0	31489	695	29799	195083	263850	263850			1	
LIYSGKQMNDEK	2	Acetyl (K)	1466.7075	0.70752973	2718	Q15843	NEDD8	NEDD8	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	46.595	36.418	2	0.00075322	21109	160513_QHF_FH_JSI12Kac_4	85.377	55.123			0.9614	1.0824	28.34	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1216	1.3226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8241	0.88586	NaN	1	0	Median	29082000	13097000	15985000	0	0	0	12828000	5296300	7531900	0	0	0	16254000	7800900	8453100	31490	2718	29800	195084;195085	263851;263852;263853	263852	2645;2646		3	
LIYSGKQMNDEK	2	Acetyl (K);Oxidation (M)	1482.7024	0.70244436	2718	Q15843	NEDD8	NEDD8	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13.5	0.5						2	2				2		2	35.841	26.798	2	0.014289	15251	160513_QHF_FH_JSI10Kac_3	46.606	39.4			0.94475	1.0281	23.549	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2902	1.5193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93592	1.0114	2.3052	2	0	Median	16610000	7954500	8655300	0	0	0	5311500	1656100	3655300	0	0	0	11298000	6298400	5000000	31491	2718	29800	195086;195087;195088;195089	263854;263855;263856;263857;263858	263858	2645;2646	2107	5	
LIYTGNMAR	0	Unmodified	1037.5328	0.53280025	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	34.002	33.346	2	9.0493E-07	28338	160511_QHF_FH_JSI12i_3	135.84	73.001			0.90007	0.89294	18.72	6	1	Median	0.99394	0.84666	NaN	1	0	Median	0.88665	1.0525	27.076	2	0	Median	0.8275	0.81483	17.292	2	1	Median	0.89003	0.91741	NaN	1	0	Median	1101800000	567480000	534320000	146940000	61457000	85485000	224570000	133240000	91330000	412450000	211080000	201370000	317840000	161700000	156140000	31492	4438	29801	195090;195091;195092;195093;195094;195095	263859;263860;263861;263862;263863;263864	263864			6	
LKDDEVAQLK	2	Unmodified	1157.6292	0.62920306	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.59	7	14	11				5	7		9	14	11	10	29.494	26.326	2;3	2.3046E-14	23487	160511_QHF_FH_JSI11i_1	168.74	129.72			0.91628	0.89606	78.376	44	17	Median	1.0809	0.87031	104.46	9	4	Median	0.71501	0.85537	81.321	14	9	Median	0.85683	0.83662	84.595	11	4	Median	1.0208	1.1012	16.825	10	0	Median	44989000000	21919000000	23070000000	7388700000	4040700000	3348000000	13921000000	6334900000	7586200000	15385000000	7499700000	7885400000	8294300000	4044100000	4250200000	31493	864	29802	195096;195097;195098;195099;195100;195101;195102;195103;195104;195105;195106;195107;195108;195109;195110;195111;195112;195113;195114;195115;195116;195117;195118;195119;195120;195121;195122;195123;195124;195125;195126;195127;195128;195129;195130;195131;195132;195133;195134;195135;195136;195137;195138;195139	263865;263866;263867;263868;263869;263870;263871;263872;263873;263874;263875;263876;263877;263878;263879;263880;263881;263882;263883;263884;263885;263886;263887;263888;263889;263890;263891;263892;263893;263894;263895;263896;263897;263898;263899;263900;263901;263902;263903;263904;263905;263906;263907;263908;263909;263910;263911;263912;263913;263914;263915;263916;263917;263918;263919;263920;263921;263922;263923;263924;263925;263926;263927;263928;263929;263930;263931;263932;263933;263934;263935;263936;263937;263938;263939;263940;263941	263873			76	
LKDDEVAQLKK	3	Unmodified	1285.7242	0.72416608	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.48		5	8						1	3	2	4	5	22.486	21.923	2;3;4	1.5733E-05	18443	160511_QHF_FH_JSI11i_3	133.32	109.25			0.37992	0.43603	56.081	10	10	Median	0.70812	0.60084	8.8048	2	2	Median	0.37992	0.45197	23.924	2	2	Median	0.25458	0.23337	61.859	3	3	Median	0.18426	0.18771	69.453	3	3	Plateau	8162000000	5083100000	3078800000	983830000	456360000	527470000	1457000000	718870000	738150000	1756500000	1196400000	560150000	3964600000	2711600000	1253100000	31494	864	29803	195140;195141;195142;195143;195144;195145;195146;195147;195148;195149;195150;195151;195152;195153	263942;263943;263944;263945;263946;263947;263948;263949;263950;263951;263952;263953;263954;263955;263956;263957;263958	263943			17	
LKDDEVAQLKK	3	Acetyl (K)	1327.7347	0.73473076	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14	0							2				1		1	47.054	36.843	3	0.0036364	20804	160513_QHF_FH_JSI10Kac_4	66.267	48.434			0.5315	0.61002	89.424	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97032	1.1481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.29114	0.32414	NaN	1	0	Median	25832000	15122000	10710000	0	0	0	13925000	6132800	7792400	0	0	0	11907000	8989500	2917200	31495	864	29803	195154;195155	263959;263960;263961	263959	561		3	
LKDEEISAAAIK	2	Unmodified	1286.7082	0.70818166	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		35.773	34.964	2	0.0007397	29743	160511_QHF_FH_JSI11i_2	88.338	51.913			1.0989	0.91222	27.56	3	0	Median	1.0989	0.91222	NaN	1	0	Median	0.67119	0.81725	NaN	1	0	Median	1.3636	1.3784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101880000	51022000	50858000	25476000	8542100	16934000	35861000	22000000	13860000	40544000	20480000	20064000	0	0	0	31496	475	29804	195156;195157;195158	263962;263963	263963			2	
LKDELASTK	2	Unmodified	1003.555	0.55497548	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.06		4	3					4		4	2	3	2	15.759	12.069	3	1.3421E-05	10051	160511_QHF_FH_JSI12i_3	102.52	70.203			1.0399	0.97808	56.496	11	8	Median	1.3144	1.0742	59.552	4	3	Median	0.5548	0.68499	66.017	2	2	Median	1.0399	0.97808	70.183	3	3	Median	0.91337	0.96837	13.285	2	0	Median	4715000000	2580300000	2134700000	503900000	254760000	249130000	838880000	550190000	288700000	1625700000	886930000	738750000	1746500000	888390000	858160000	31497	1741	29805	195159;195160;195161;195162;195163;195164;195165;195166;195167;195168;195169	263964;263965;263966;263967;263968;263969;263970;263971;263972;263973;263974	263974			11	
LKDETLQPFFEGLLPR	1	Unmodified	1902.0251	0.025099124	4857	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.45	100.47	3	0.0016795	87087	160511_QHF_FH_JSI12i_3	54.281	37.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31498	4857	29806	195170	263975	263975			1	
LKDEVLK	2	Unmodified	843.50657	0.50656873	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.123	15.186	3	0.0053566	11943	160511_QHF_FH_JSI12i_3	63.48	16.413			2.828	2.8162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.828	2.8162	NaN	1	1	Median	60885000	14210000	46674000	0	0	0	0	0	0	0	0	0	60885000	14210000	46674000	31499	2516	29807	195171	263976	263976			1	
LKDEVVR	1	Unmodified	857.49707	0.49706667	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	10.55	10.37	3	0.014568	7966	160511_QHF_FH_JSI11i_3	47.082	16.915			1.0928	1.2786	17.131	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0928	1.2786	NaN	1	0	Median	1.6578	1.5425	NaN	1	0	Median	1.0617	1.0957	NaN	1	0	Median	1037200000	489270000	547900000	0	0	0	223060000	113410000	109650000	333960000	152800000	181160000	480160000	223060000	257090000	31500	2560	29808	195172;195173;195174	263977;263978;263979	263978			3	
LKDICSMTKEKTAR	3	Oxidation (M)	1695.8648	0.86477543	2815	Q3KR37	GRAMD1B	GRAM domain-containing protein 1B	yes	yes	0	0	1	3	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		92.331	84.347	2	0.0049609	47017	160513_QHF_FH_JSI11Kac_6	62.303	26.65			0.95152	0.87225	22.694	2	0	Median	0.85248	0.74293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0621	1.0241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	219510000	152520000	66988000	66465000	33001000	33464000	82081000	82081000	0	70967000	37443000	33524000	0	0	0	31501	2815	29809	195175;195176;195177	263980;263981;263982	263980		2149	3	
LKDLEALLNSK	2	Acetyl (K)	1284.7289	0.7289171	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14.7	0.471							1	2			2		1	83.837	73.407	2	0.0046325	38344	160513_QHF_FH_JSI10Kac_4	66.595	28.509			0.785	0.85862	32.305	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86374	1.0302	43.197	2	0	Median	NaN	NaN	NaN	0	0	Median	0.785	0.85862	NaN	1	0	Median	12212000	5729700	6482300	0	0	0	9442800	4493100	4949700	0	0	0	2769200	1236600	1532600	31502	791	29810	195178;195179;195180	263983	263983	416		1	
LKDPANFQYPAESVLAYK	2	Unmodified	2053.052	0.052042156	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.42	1	7	7						2	3	5	6	3	74.528	72.97	2;3	2.8102E-65	63953	160511_QHF_FH_JSI12i_3	229.68	207.92			0.94391	1.0044	15.94	17	1	Median	1.2797	1.097	2.2903	3	0	Plateau	0.94335	1.1483	16.269	5	1	Median	0.91699	0.88743	13.875	6	0	Median	0.928	0.96163	7.0249	3	0	Median	6893000000	3404300000	3488700000	467770000	233740000	234040000	1033500000	501520000	532000000	2114200000	1072700000	1041500000	3277500000	1596400000	1681100000	31503	1080	29811	195181;195182;195183;195184;195185;195186;195187;195188;195189;195190;195191;195192;195193;195194;195195;195196;195197	263984;263985;263986;263987;263988;263989;263990;263991;263992;263993;263994;263995;263996;263997;263998;263999;264000;264001;264002;264003;264004;264005;264006;264007;264008;264009;264010;264011;264012;264013;264014;264015;264016;264017;264018;264019;264020;264021;264022;264023;264024;264025;264026;264027;264028;264029;264030;264031	264030			48	
LKEEEEDK	2	Unmodified	1018.4819	0.48187012	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							5	4	5	6	5.3989	5.0963	2;3	0.0003734	2809	160511_QHF_FH_JSI9i_1	89.047	47.171			0.91339	0.84523	26.628	20	0	Median	0.90467	0.73598	24.064	5	0	Median	0.73746	0.88085	35.941	4	0	Median	0.96127	0.95609	15.994	5	0	Median	0.66317	0.71726	24.042	6	0	Median	17830000000	9386900000	8443600000	3541700000	1731400000	1810300000	3852000000	2151100000	1700900000	5511900000	2734300000	2777500000	4924900000	2770000000	2154800000	31504	1297	29812	195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208;195209;195210;195211;195212;195213;195214;195215;195216;195217	264032;264033;264034;264035;264036;264037;264038;264039;264040;264041;264042;264043;264044;264045;264046;264047;264048;264049;264050;264051;264052;264053;264054;264055;264056;264057;264058;264059;264060;264061;264062;264063;264064	264053			33	
LKEEEEDKK	3	Unmodified	1146.5768	0.57683314	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.37	4.62		10	6					3		4	4	7	4	5.0279	3.2658	2;3;4	6.561E-06	2522	160511_QHF_FH_JSI11i_3	123.79	102.42			0.81721	0.8364	27.156	18	5	Median	1.1716	0.98396	34.084	3	2	Median	0.64544	0.77341	27.905	4	1	Median	0.90958	0.84973	31.328	7	2	Median	0.75737	0.80203	10.693	4	0	Median	8424000000	4630100000	3793900000	907300000	467660000	439640000	1346100000	771980000	574140000	3992600000	2097800000	1894800000	2177900000	1292600000	885300000	31505	1297	29813	195218;195219;195220;195221;195222;195223;195224;195225;195226;195227;195228;195229;195230;195231;195232;195233;195234;195235;195236	264065;264066;264067;264068;264069;264070;264071;264072;264073;264074;264075;264076;264077;264078;264079;264080;264081;264082;264083;264084;264085;264086;264087;264088;264089	264068			24	
LKEEIEVMAK	2	Unmodified	1188.6424	0.64241028	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	36.256	35.966	2;3	0.001329	30382	160511_QHF_FH_JSI12i_3	67.385	52.241			1.4324	1.4532	33.94	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.135	1.1431	NaN	1	1	Median	1.8077	1.8474	NaN	1	1	Median	167020000	77701000	89320000	0	0	0	0	0	0	24831000	10084000	14748000	142190000	67618000	74573000	31506	575	29814	195237;195238	264090;264091	264091			2	
LKEEISK	2	Unmodified	845.48583	0.48583328	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.62	2	4	3					3		1	5	3	3	11.403	8.6147	3	0.0047561	7504	160511_QHF_FH_JSI11i_3	67.169	6.4876			0.91723	0.93112	29.874	11	3	Median	0.96619	0.79864	NaN	1	0	Median	0.85369	0.97795	49.196	4	2	Median	0.98421	0.93112	20.948	3	1	Median	0.91723	0.95274	14.821	3	0	Median	6502200000	3306000000	3196200000	656640000	291690000	364950000	1156200000	567220000	588960000	1282800000	634090000	648740000	3406600000	1813000000	1593600000	31507	1480	29815	195239;195240;195241;195242;195243;195244;195245;195246;195247;195248;195249;195250	264092;264093;264094;264095;264096;264097;264098;264099;264100;264101;264102;264103	264093			12	
LKEEISK	2	Acetyl (K)	887.4964	0.49639797	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.8					1	1	3				3	1	1	27.149	19.031	2	0.0014391	11430	160513_QHF_FH_JSI10Kac_4	111.95	16.417			0.85494	1.0078	14.086	4	0	Median	NaN	NaN	NaN	0	0	Median	0.87977	1.0201	4.4042	3	0	Median	0.79706	0.78652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	351420000	212270000	139150000	0	0	0	241120000	128180000	112940000	61769000	35562000	26207000	48530000	48530000	0	31508	1480	29815	195251;195252;195253;195254;195255	264104;264105;264106;264107	264104	1477		4	
LKEELEEAR	1	Unmodified	1115.5823	0.58225287	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	16.155	15.81	2;3	0.00029874	12913	160511_QHF_FH_JSI11i_3	75.652	16.585			0.91005	0.95614	31.513	10	1	Median	1.0155	0.88399	22.621	2	0	Median	0.68429	0.83869	19.034	2	0	Median	0.92412	0.88874	46.25	4	1	Median	1.0284	1.0284	4.5268	2	0	Median	910180000	490840000	419340000	120690000	53555000	67138000	162870000	95562000	67310000	377780000	205050000	172730000	248840000	136680000	112160000	31509	2217	29816	195256;195257;195258;195259;195260;195261;195262;195263;195264;195265;195266	264108;264109;264110;264111;264112;264113;264114;264115;264116;264117;264118;264119	264109			12	
LKEELEEARDIAR	1	Unmodified	1570.8315	0.83148469	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		34.222	33.512	3	0.0016983	29083	160511_QHF_FH_JSI11i_3	68.277	54.561			1.5629	1.6149	45.419	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.1713	NaN	1	0	Median	2.3611	2.2265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89357000	32599000	56758000	0	0	0	31640000	17519000	14121000	57717000	15080000	42637000	0	0	0	31510	2217	29817	195267;195268	264120;264121	264120			1	
LKEELIDAIR	1	Unmodified	1198.6921	0.69213767	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	50.154	50.154	3	0.0072096	43009	160511_QHF_FH_JSI12i_3	43.991	34.803			2.1938	2.0444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1938	2.0444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45070000	17663000	27407000	0	0	0	0	0	0	45070000	17663000	27407000	0	0	0	31511	3570	29818	195269;195270	264122;264123	264123			2	
LKEELIDAIRQELSK	2	Unmodified	1784.0044	0.0043636815	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		85.667	85.667	4	0.027964	76449	160511_QHF_FH_JSI11i_3	36.638	18.225			0.66347	0.62608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66347	0.62608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11899000	7995100	3904300	0	0	0	0	0	0	11899000	7995100	3904300	0	0	0	31512	3570	29819	195271	264124	264124			1	
LKEENFFGPK	2	Unmodified	1207.6237	0.62372375	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	38.745	38.655	3	1.7282E-05	32942	160511_QHF_FH_JSI12i_3	83.397	70.82			0.76615	0.75211	8.8925	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85532	0.80092	NaN	1	0	Median	0.68628	0.70627	NaN	1	0	Median	711470000	410080000	301390000	0	0	0	0	0	0	216070000	124240000	91833000	495400000	285840000	209560000	31513	5153	29820	195272;195273	264125	264125			1	
LKEEWEK	2	Unmodified	960.49165	0.49164694	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	16.682	16.734	3	0.056952	13398	160511_QHF_FH_JSI12i_3	31.074	14.871			1.8027	1.82	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8027	1.82	NaN	1	1	Median	86084000	32970000	53114000	0	0	0	0	0	0	0	0	0	86084000	32970000	53114000	31514	5463	29821	195274	264126	264126			1	
LKEEYQSLIR	1	Unmodified	1277.698	0.69795133	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			4								1	2	1	38.889	38.467	2;3	0.014502	32688	160511_QHF_FH_JSI12i_3	61.78	26.335			0.84077	0.80299	10.903	4	1	Median	NaN	NaN	NaN	0	0	Median	0.6465	0.75783	NaN	1	0	Median	0.9058	0.85073	16.047	2	1	Median	0.85903	0.849	NaN	1	0	Median	178950000	93073000	85881000	0	0	0	18442000	11353000	7089100	114640000	58110000	56525000	45877000	23611000	22267000	31515	5583	29822	195275;195276;195277;195278	264127;264128;264129	264129			3	
LKENTFTIENESVK	2	Acetyl (K)	1692.857	0.85703074	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	1	0	0	1				By MS/MS	13.5	0.5						1	1						2	64.336	54.37	2;3	0.023476	29692	160513_QHF_FH_JSI12Kac_4	32.702	26.807			1.0207	1.1022	52.785	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0207	1.1022	52.785	2	0	Median	16688000	7331500	9357000	0	0	0	0	0	0	0	0	0	16688000	7331500	9357000	31516	3050	29823	195279;195280	264130;264131	264131	2747		2	
LKESAEFQTQLEK	2	Unmodified	1549.7988	0.79878758	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	96.528	96.29	3	0.0058477	87089	160511_QHF_FH_JSI10i_1	44.457	24.075			0.88024	0.89838	9.6946	4	0	Median	1.3226	1.0821	NaN	1	0	Median	0.77277	0.89424	NaN	1	0	Median	0.91795	0.90254	NaN	1	0	Median	0.84408	0.88033	NaN	1	0	Median	102350000	56545000	45804000	15630000	7465100	8164800	38514000	24195000	14319000	28149000	14870000	13278000	20057000	10015000	10042000	31517	1016	29824	195281;195282;195283;195284	264132	264132			1	
LKFDPELLFNK	2	Unmodified	1362.7547	0.75473792	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	88.385	87.581	3	0.0030153	76005	160511_QHF_FH_JSI12i_3	58.676	41.734			0.69041	0.60163	27.041	3	3	Median	0.69041	0.60163	NaN	1	1	Median	0.43361	0.51054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80791	0.86595	NaN	1	1	Median	25986000	12332000	13653000	5019400	2622700	2396700	8923600	4770200	4153300	0	0	0	12043000	4939400	7103400	31518	1434	29825	195285;195286;195287	264133;264134;264135	264135			3	
LKFGVYDIDNK	2	Acetyl (K)	1352.6976	0.69761697	479	O75131	CPNE3	Copine-3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.741	68.132	2	0.0054199	36168	160513_QHF_FH_JSI11Kac_5	63.283	42.413			0.42062	0.4132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42062	0.4132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5007000	3815100	1191900	0	0	0	0	0	0	5007000	3815100	1191900	0	0	0	31519	479	29826	195288	264136;264137	264136	244		2	
LKGDDLQAIK	2	Unmodified	1099.6237	0.62372375	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.13		5	6					3		2	2	5	5	30.843	28.398	2;3	9.4784E-05	23712	160511_QHF_FH_JSI12i_3	117.7	71.236			1.2892	1.2066	75.969	14	8	Median	1.6704	1.4204	14.671	2	1	Median	1.8324	2.1598	102.72	2	1	Median	2.18	2.1589	85.187	5	4	Median	0.81082	0.84889	70.959	5	2	Median	2362300000	1233300000	1129000000	275280000	113300000	161980000	78857000	25869000	52988000	690280000	326560000	363720000	1317900000	767530000	550320000	31520	882	29827	195289;195290;195291;195292;195293;195294;195295;195296;195297;195298;195299;195300;195301;195302	264138;264139;264140;264141;264142;264143;264144;264145;264146;264147;264148	264148			11	
LKGDDLQAIKK	3	Unmodified	1227.7187	0.71868677	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							3	3	4	4	23.528	23.152	2;3;4	4.7184E-05	18983	160511_QHF_FH_JSI12i_3	101.89	73.711			0.3247	0.33498	28.439	7	7	Median	0.2991	0.24406	NaN	1	1	Median	0.29629	0.3368	NaN	1	1	Median	0.36722	0.34061	17.317	3	3	Plateau	0.25719	0.25911	33.768	2	2	Median	4456600000	3031900000	1424700000	351720000	248410000	103310000	676380000	458000000	218380000	1278300000	834990000	443280000	2150300000	1490500000	659740000	31521	882	29828	195303;195304;195305;195306;195307;195308;195309;195310;195311;195312;195313;195314;195315;195316	264149;264150;264151;264152;264153;264154;264155;264156;264157;264158;264159;264160;264161;264162;264163	264160			15	
LKGDVDVSGPK	2	Unmodified	1113.603	0.60298831	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	18.998	18.709	2;3	0.00015364	15613	160511_QHF_FH_JSI11i_3	62.088	43.753			1.1644	1.1915	12.026	3	0	Plateau	1.1203	0.95423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2417	1.1551	NaN	1	0	Median	1.1644	1.1915	NaN	1	0	Median	432660000	193060000	239590000	28876000	14251000	14625000	0	0	0	103430000	45132000	58294000	300360000	133680000	166680000	31522	2286	29829	195317;195318;195319	264164;264165;264166;264167;264168;264169	264166			6	
LKGEATVSFDDPPSAK	2	Unmodified	1660.8308	0.83081599	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.61	1	3	10							2	2	4	6	39.429	38.771	2;3	1.2743E-26	34109	160511_QHF_FH_JSI11i_3	145.6	106.45			0.77806	0.85106	41.803	11	6	Median	0.58754	0.4965	42.218	2	1	Median	0.63662	0.76362	15.331	2	0	Median	1.0312	0.95191	13.938	3	2	Plateau	0.95137	1.006	44.697	4	3	Median	2173400000	1062000000	1111300000	197690000	114150000	83547000	294370000	164390000	129980000	917150000	420820000	496330000	764130000	362660000	401480000	31523	1442	29830	195320;195321;195322;195323;195324;195325;195326;195327;195328;195329;195330;195331;195332;195333	264170;264171;264172;264173;264174;264175;264176;264177;264178;264179;264180;264181;264182;264183;264184;264185	264173			16	
LKGELESSDQVR	1	Unmodified	1359.6994	0.69940789	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	17.994	18.005	2;3	0.0021927	14987	160511_QHF_FH_JSI11i_3	70.488	51.743			1.0194	0.84533	11.12	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96701	0.91078	14.5	2	1	Median	0.84601	0.84533	NaN	1	1	Median	207260000	91221000	116040000	0	0	0	0	0	0	180700000	75173000	105520000	26565000	16048000	10517000	31524	5213	29831	195334;195335;195336	264186;264187;264188	264186			3	
LKGEMMDLQHGSLFLQTPK	2	2 Oxidation (M)	2204.097	0.096960213	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	2	2	2	4	53.657	51.969	3;4	3.8437E-10	42994	160511_QHF_FH_JSI9i_3	124.26	114.98			0.96801	0.89111	12.181	10	2	Median	1.1455	0.91538	1.1153	2	0	Median	0.71432	0.82095	0.68963	2	0	Median	0.91797	0.8579	2.6861	2	0	Median	1.0144	0.86827	16.686	4	2	Linear	2557800000	1221500000	1336200000	664620000	253080000	411550000	607330000	311170000	296160000	573500000	261730000	311770000	712320000	395560000	316760000	31525	864	29832	195337;195338;195339;195340;195341;195342;195343;195344;195345;195346	264189;264190;264191;264192;264193;264194;264195;264196;264197;264198;264199;264200;264201;264202;264203;264204;264205;264206;264207;264208;264209;264210;264211;264212;264213;264214	264203		401;402	26	
LKGEMMDLQHGSLFLQTPK	2	Oxidation (M)	2188.102	0.10204559	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			20							4	5	4	7	63.051	62.274	3;4	3.9532E-24	51620	160511_QHF_FH_JSI9i_3	170.53	156.69			1.0122	0.93791	19.641	20	7	Median	1.1265	0.90125	6.0906	4	0	Median	0.71164	0.81647	21.462	5	1	Median	1.0318	0.97941	1.1479	4	2	Median	0.73216	0.73803	28.255	7	4	Median	7246600000	3684800000	3561800000	1547700000	631750000	915930000	1629400000	908770000	720620000	1285900000	630630000	655240000	2783600000	1513600000	1270000000	31526	864	29832	195347;195348;195349;195350;195351;195352;195353;195354;195355;195356;195357;195358;195359;195360;195361;195362;195363;195364;195365;195366	264215;264216;264217;264218;264219;264220;264221;264222;264223;264224;264225;264226;264227;264228;264229;264230;264231;264232;264233;264234;264235;264236;264237;264238;264239;264240;264241;264242;264243;264244;264245;264246;264247;264248;264249;264250;264251;264252;264253;264254;264255;264256;264257;264258;264259;264260;264261	264247		401;402	47	
LKGEMMDLQHGSLFLQTPK	2	Unmodified	2172.1071	0.10713097	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	4.69		4	19						4	9	8	6	4	73.081	70.983	2;3;4	3.6589E-54	59410	160511_QHF_FH_JSI9i_3	216.65	196.05			0.88973	0.86535	28.355	25	9	Median	1.1376	0.92185	29.337	8	4	Median	0.74724	0.89346	37.133	8	3	Median	0.85666	0.81359	27.142	5	2	Median	0.94315	0.97544	10.868	4	0	Median	22931000000	10535000000	12396000000	4670200000	2197800000	2472400000	5690300000	2879600000	2810600000	5315700000	2212400000	3103300000	7254900000	3245000000	4009900000	31527	864	29832	195367;195368;195369;195370;195371;195372;195373;195374;195375;195376;195377;195378;195379;195380;195381;195382;195383;195384;195385;195386;195387;195388;195389;195390;195391;195392;195393	264262;264263;264264;264265;264266;264267;264268;264269;264270;264271;264272;264273;264274;264275;264276;264277;264278;264279;264280;264281;264282;264283;264284;264285;264286;264287;264288;264289;264290;264291;264292;264293;264294;264295;264296;264297;264298;264299;264300;264301;264302;264303;264304;264305;264306;264307;264308;264309;264310;264311;264312;264313;264314;264315;264316;264317;264318;264319;264320;264321;264322;264323;264324;264325;264326;264327;264328;264329;264330;264331;264332;264333;264334;264335;264336;264337;264338;264339;264340	264299			79	
LKGEMMDLQHGSLFLR	1	Unmodified	1873.9543	0.95425914	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.63	2.92		1	17						1	7	7	3	2	70.507	69.126	2;3;4	5.5842E-16	58048	160511_QHF_FH_JSI10i_3	138.91	129.16			0.90783	0.77478	27.063	17	5	Median	0.93769	0.77478	11.394	5	2	Median	0.59196	0.69795	28.613	7	3	Median	0.97141	0.92109	8.8298	3	0	Median	1.0429	1.0632	10.344	2	0	Median	4023800000	2148200000	1875600000	582100000	244270000	337840000	1064200000	667530000	396690000	2101000000	1085600000	1015400000	276530000	150820000	125710000	31528	761	29833	195394;195395;195396;195397;195398;195399;195400;195401;195402;195403;195404;195405;195406;195407;195408;195409;195410;195411;195412	264341;264342;264343;264344;264345;264346;264347;264348;264349;264350;264351;264352;264353;264354;264355;264356;264357;264358;264359;264360;264361;264362;264363;264364;264365;264366;264367;264368;264369;264370;264371;264372;264373;264374;264375;264376;264377;264378;264379;264380;264381;264382;264383;264384	264355			44	
LKGEMMDLQHGSLFLR	1	Oxidation (M)	1889.9492	0.94917376	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		4.3	3.9			9						1	2	6	2		60.957	59.048	3;4	8.0812E-05	52350	160511_QHF_FH_JSI11i_3	84.14	73.481			0.94925	0.89685	23.594	9	5	Median	1.1715	0.96094	13.241	2	0	Median	0.79186	0.90619	32.321	5	3	Median	0.96598	0.88873	1.2868	2	2	Median	NaN	NaN	NaN	0	0	Median	718690000	376540000	342150000	197980000	90070000	107910000	280400000	160220000	120180000	240310000	126260000	114050000	0	0	0	31529	761	29833	195413;195414;195415;195416;195417;195418;195419;195420;195421;195422	264385;264386;264387;264388;264389;264390;264391;264392;264393;264394;264395;264396	264386		262;263	12	
LKGEMMDLQHGSLFLR	1	2 Oxidation (M)	1905.9441	0.94408839	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	2	1	By MS/MS				3	0			1							1				49.25	47.645	3	0.027037	39112	160511_QHF_FH_JSI9i_3	32.688	7.3692			1.3306	1.0756	NaN	1	0	Median	1.3306	1.0756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44015000	24047000	19968000	44015000	24047000	19968000	0	0	0	0	0	0	0	0	0	31530	761	29833	195423	264397	264397		262;263	0	
LKGYLISGSSYAR	1	Acetyl (K)	1455.7722	0.7721789	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	64.666	55.489	2	0.0020768	30063	160513_QHF_FH_JSI11Kac_6	74.611	52.618			0.75859	0.68382	4.1538	2	0	Median	0.79846	0.66402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72072	0.7042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33340000	11688000	21653000	5685000	3284200	2400800	7983100	0	7983100	14040000	8403300	5636600	5632100	0	5632100	31531	3343	29834	195424;195425;195426;195427;195428	264398;264399;264400;264401;264402	264398	2850		5	
LKHILILQNK	2	Acetyl (K)	1260.7918	0.79179213	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	1	0	0	1			By MS/MS		16	0									1			1		62.049	52.341	3	3.5246E-05	28334	160513_QHF_FH_JSI11Kac_6	96.342	90.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22288000	22288000	0	0	0	0	0	0	0	22288000	22288000	0	0	0	0	31532	1508	29835	195429	264403	264403	1537		1	
LKHYGPGWVSMANAGK	2	Acetyl (K)	1756.8719	0.87190972	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	62.421	52.999	2;3	2.475E-07	29100	160513_QHF_FH_JSI10Kac_6	109.35	87.521			0.93388	1.0267	104.2	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3202	1.5518	NaN	1	0	Median	0.22137	0.21523	NaN	1	1	Median	0.93388	1.0267	NaN	1	1	Median	184280000	137860000	46427000	0	0	0	70633000	31971000	38662000	104240000	98799000	5444000	9409300	7088400	2320900	31533	1224	29836	195430;195431;195432;195433	264404;264405;264406;264407;264408	264408	1099		5	
LKKTETQEK	3	Unmodified	1103.6186	0.61863837	2064;2004	P63313;CON__P21752;O14604;P62328	TMSB10;TMSB4Y;TMSB4X	Thymosin beta-10;Thymosin beta-4, Y-chromosomal;Thymosin beta-4;Hematopoietic system regulatory peptide	no	no	0	0	0	2		By MS/MS			3	0			1								1			3.588	3.1269	3	0.0035131	1620	160511_QHF_FH_JSI10i_3	66.056	46.294		+	11.938	14.077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11.938	14.077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26229000	1694900	24534000	0	0	0	26229000	1694900	24534000	0	0	0	0	0	0	31534	2064;2004	29837	195434	264409	264409			1	
LKLDGLDEDGEK	2	Unmodified	1330.6616	0.6616254	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.911	40.701	2	0.013861	34803	160511_QHF_FH_JSI12i_3	58.132	46.913			1.0069	1.0071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0069	1.0071	NaN	1	0	Median	42334000	19626000	22707000	0	0	0	0	0	0	0	0	0	42334000	19626000	22707000	31535	1357	29838	195435	264410	264410			1	
LKLEAELGNMQGLVEDFK	2	Unmodified	2033.0503	0.050327596	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	100.4	100.32	2;3	2.5133E-22	86894	160511_QHF_FH_JSI12i_3	180.49	159.53		+	0.81677	0.83539	40.738	9	0	Median	0.81677	0.70615	NaN	1	0	Median	0.3814	0.45024	49.083	2	0	Median	0.96507	0.91519	17.887	3	0	Median	1.1126	1.1273	19.041	3	0	Median	1400200000	665170000	734990000	45308000	22317000	22991000	101650000	65492000	36160000	316870000	164870000	152000000	936330000	412490000	523840000	31536	51	29839	195436;195437;195438;195439;195440;195441;195442;195443;195444	264411;264412;264413;264414;264415;264416;264417;264418;264419;264420;264421;264422;264423;264424;264425;264426;264427;264428;264429	264428			19	
LKLEAELGNMQGLVEDFK	2	Oxidation (M)	2049.0452	0.045242218	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1				By MS/MS	3	0			1										1	77.809	77.543	3	0.0020462	67243	160511_QHF_FH_JSI12i_3	59.585	55.924		+	0.90942	0.94981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90942	0.94981	NaN	1	1	Median	38070000	18025000	20045000	0	0	0	0	0	0	0	0	0	38070000	18025000	20045000	31537	51	29839	195445	264430	264430		18	1	
LKLEDFFAR	1	Unmodified	1137.6182	0.61824444	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.51		3	10						2	5	4	4	2	75.546	73.555	2;3	2.3735E-07	64484	160511_QHF_FH_JSI12i_3	125.48	96.007			0.84125	0.88385	12.603	14	1	Median	1.1476	0.92822	11.547	4	0	Median	0.8238	0.89401	16.033	4	1	Linear	0.88676	0.86446	10.152	4	0	Median	0.7875	0.81547	8.6157	2	0	Median	3770700000	1876000000	1894700000	767570000	356780000	410790000	1061000000	575180000	485860000	1149900000	548670000	601210000	792220000	395330000	396890000	31538	1000	29840	195446;195447;195448;195449;195450;195451;195452;195453;195454;195455;195456;195457;195458;195459;195460	264431;264432;264433;264434;264435;264436;264437;264438;264439;264440;264441;264442;264443;264444;264445;264446;264447;264448;264449;264450;264451;264452;264453;264454;264455;264456;264457;264458;264459;264460;264461;264462;264463;264464;264465;264466	264466			36	
LKLEPHEGLLLR	1	Unmodified	1416.8453	0.84528426	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	3	3	3	54.819	53.981	2;3;4	5.5049E-11	44883	160511_QHF_FH_JSI9i_3	123.02	114.29			0.89096	0.87586	13.08	12	0	Median	1.2362	1.012	5.9897	3	0	Median	0.66333	0.75598	22.295	3	0	Plateau	0.83747	0.78385	5.3244	3	0	Plateau	0.87648	0.88887	5.141	3	0	Median	3817200000	1728900000	2088300000	962870000	338490000	624380000	925500000	544440000	381060000	1562600000	676050000	886570000	366240000	169970000	196280000	31539	895	29841	195461;195462;195463;195464;195465;195466;195467;195468;195469;195470;195471;195472	264467;264468;264469;264470;264471;264472;264473;264474;264475;264476;264477;264478;264479;264480;264481;264482;264483;264484;264485;264486;264487;264488;264489;264490;264491;264492;264493;264494;264495;264496;264497;264498;264499	264491			33	
LKLEPHEGLLLR	1	Acetyl (K)	1458.8558	0.85584895	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.885	64.53	3	1.2308E-08	35023	160513_QHF_FH_JSI11Kac_6	112.08	96.141			0.16799	0.16869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16799	0.16869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35668000	30842000	4826100	0	0	0	0	0	0	35668000	30842000	4826100	0	0	0	31540	895	29841	195473	264500	264500	638		1	
LKLPAVVTADLR	1	Unmodified	1294.7973	0.79727144	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		69.525	69.525	3	0.00017292	61929	160511_QHF_FH_JSI11i_3	72.958	68.871			0.81283	0.77069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81283	0.77069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24062000	11812000	12251000	0	0	0	0	0	0	24062000	11812000	12251000	0	0	0	31541	1473	29842	195474;195475	264501;264502	264502			2	
LKLPSIPLVPVSAQK	2	Unmodified	1588.9916	0.99161415	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				88.642	87.47	3	0.011089	71722	160511_QHF_FH_JSI9i_3	41.967	40.781			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31542	2707	29843	195476	264503	264503			1	
LKLYLPK	2	Acetyl (K)	915.57934	0.57933974	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0.707							1	2	1		1	1	2	74.822	64.507	2	0.042449	34405	160513_QHF_FH_JSI11Kac_5	62.717	21.215			0.776	0.87916	33.746	4	0	Median	NaN	NaN	NaN	0	0	Median	0.88698	1.0368	NaN	1	0	Median	0.58308	0.56617	NaN	1	0	Median	0.85869	0.94652	33.758	2	0	Median	25322000	14659000	10663000	0	0	0	2328600	1025300	1303300	6254400	4280300	1974100	16739000	9353800	7385600	31543	3213	29844	195477;195478;195479;195480	264504	264504			1	
LKNDIEEQETLLGTIMPEEESAK	2	Unmodified	2616.284	0.28402852	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.931	83.931	3	0.02236	74905	160511_QHF_FH_JSI11i_3	31.75	24.872			0.35859	0.33048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35859	0.33048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20400000	14211000	6189300	0	0	0	0	0	0	20400000	14211000	6189300	0	0	0	31544	3896	29845	195481	264505	264505			1	
LKPAFIK	2	Unmodified	815.52691	0.52691024	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	35.887	31.575	3	0.015225	26647	160511_QHF_FH_JSI11i_3	49.358	9.2554			1.0444	0.85712	28.092	7	0	Plateau	1.2916	1.0408	29.656	2	0	Median	1.0526	1.231	50.217	2	0	Median	1.0079	0.96955	9.5768	2	0	Median	0.80146	0.81786	NaN	1	0	Median	4025500000	2043500000	1982000000	1182700000	523420000	659250000	874390000	482140000	392250000	823810000	396810000	427000000	1144600000	641130000	503490000	31545	1848	29846	195482;195483;195484;195485;195486;195487;195488	264506;264507;264508;264509;264510;264511;264512;264513;264514	264506			9	
LKPAHEGLVATVK	2	Unmodified	1361.8031	0.8030851	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		25.036	25.036	3	0.0025318	20837	160511_QHF_FH_JSI9i_3	51.009	44.573			0.45844	0.41925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45844	0.41925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47186000	30691000	16494000	0	0	0	0	0	0	47186000	30691000	16494000	0	0	0	31546	5698	29847	195489;195490	264515;264516	264516			2	
LKPDEGGEVPVLNVSYKPQK	3	Unmodified	2196.179	0.17903358	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							4	2	2	2	57.786	56.92	3;4	1.255E-10	47661	160511_QHF_FH_JSI10i_3	128.41	120.79			0.84464	0.83693	17.55	10	3	Median	0.91263	0.75901	11.104	4	2	Median	0.77112	0.91998	6.2912	2	0	Median	0.90638	0.86769	4.3415	2	0	Median	0.95168	1.0159	31.543	2	1	Median	1644400000	830820000	813560000	178520000	99769000	78752000	332370000	191990000	140380000	828970000	403300000	425670000	304530000	135770000	168760000	31547	1945	29848	195491;195492;195493;195494;195495;195496;195497;195498;195499;195500	264517;264518;264519;264520;264521;264522;264523;264524;264525;264526;264527;264528;264529;264530;264531;264532	264524			16	
LKPDPNTLCDEFK	2	Unmodified	1575.7603	0.76029359	50	CON__P02769			yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	55.649	55.528	2;3	0.00012687	47720	160511_QHF_FH_JSI12i_3	73.91	66.871		+	0.70998	0.70501	17.408	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68833	0.64783	28.905	2	2	Median	0.70998	0.70501	1.4205	2	0	Median	331770000	166780000	164990000	0	0	0	0	0	0	148330000	63064000	85263000	183450000	103720000	79731000	31548	50	29849	195501;195502;195503;195504	264533;264534;264535;264536;264537	264536			5	
LKPEDITQIQPQQLVLR	1	Unmodified	2018.1524	0.1524249	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	2	8	4							2	3	5	4	82.898	82.405	2;3	3.006E-08	73677	160511_QHF_FH_JSI11i_3	135.47	128.33			0.97864	0.94059	10.3	14	0	Median	1.0673	0.90956	1.6158	2	0	Median	0.71222	0.8802	3.1177	3	0	Plateau	1.0219	0.99978	16.189	5	0	Median	0.95629	0.98737	5.4003	4	0	Median	3797900000	1934800000	1863000000	410890000	213640000	197260000	601980000	351850000	250120000	1419900000	697610000	722260000	1365100000	671730000	693380000	31549	841	29850	195505;195506;195507;195508;195509;195510;195511;195512;195513;195514;195515;195516;195517;195518	264538;264539;264540;264541;264542;264543;264544;264545;264546;264547;264548;264549;264550;264551;264552;264553;264554;264555;264556;264557;264558;264559;264560;264561;264562;264563;264564;264565;264566;264567;264568;264569;264570;264571;264572;264573;264574;264575	264539			37	
LKPEGAPEPEGVAAPPPK	2	Unmodified	1782.9516	0.95159983	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	37.165	37.084	3	3.8132E-05	32307	160511_QHF_FH_JSI11i_3	77.506	71.525			0.90463	0.8875	5.0534	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91519	0.85635	NaN	1	0	Median	0.89418	0.91979	NaN	1	0	Median	210210000	110170000	100030000	0	0	0	0	0	0	77112000	34879000	42233000	133090000	75293000	57799000	31550	280	29851	195519;195520	264576;264577;264578;264579;264580	264576			5	
LKPEGLHQLLAGFEDK	2	Unmodified	1793.9676	0.96758424	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			22							11	5	3	3	81.011	80.04	2;3;4	4.968E-08	66906	160511_QHF_FH_JSI10i_3	140.02	129.55			0.95549	0.88991	29.617	18	6	Median	1.1445	0.9459	22.867	8	3	Median	0.60314	0.72208	41.398	5	2	Median	0.86482	0.82179	35.857	3	1	Plateau	0.87277	0.89643	11.252	2	0	Median	1469500000	749910000	719570000	348070000	155920000	192150000	368190000	190490000	177700000	390380000	172420000	217960000	362850000	231090000	131760000	31551	4532	29852	195521;195522;195523;195524;195525;195526;195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538;195539;195540;195541;195542	264581;264582;264583;264584;264585;264586;264587;264588;264589;264590;264591;264592;264593;264594;264595;264596;264597;264598;264599;264600;264601;264602;264603;264604;264605;264606;264607;264608;264609;264610;264611;264612;264613;264614;264615;264616;264617;264618;264619;264620;264621	264596			41	
LKPESSQQPGQDALAVK	2	Unmodified	1794.9476	0.94757708	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	32.362	32.002	2;3	9.0302E-08	26973	160511_QHF_FH_JSI12i_3	98.281	68.3			0.84044	1.1119	21.939	6	1	Linear	0.91845	0.79203	NaN	1	0	Median	0.85757	1.0627	NaN	1	0	Median	0.79504	0.75761	6.8645	2	0	Median	0.80508	0.8129	39.402	2	1	Median	636750000	352470000	284270000	58927000	34413000	24514000	79956000	46118000	33837000	195060000	105110000	89951000	302800000	166830000	135970000	31552	752	29853	195543;195544;195545;195546;195547;195548;195549	264622;264623;264624;264625;264626;264627;264628	264627			7	
LKPEVVEELTRK	2	Unmodified	1439.8348	0.83477916	1982	P62166	NCS1	Neuronal calcium sensor 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		46.262	46.262	3	0.003759	40848	160511_QHF_FH_JSI11i_3	56.139	49.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31553	1982	29854	195550	264629	264629			1	
LKPEYDIMCK	2	Unmodified	1295.6254	0.62538001	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	42.213	42.102	2;3	0.00051793	37087	160511_QHF_FH_JSI11i_3	76.655	73.432			1.4389	1.4235	42.134	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71378	0.67015	14.583	2	1	Median	1.2042	1.2039	41.009	2	0	Median	629830000	364340000	265490000	0	0	0	0	0	0	230990000	137100000	93889000	398840000	227240000	171600000	31554	4992	29855	195551;195552;195553;195554	264630;264631;264632;264633	264631			3	
LKPFFEGMSQSSSQTEIGSLNSK	2	Unmodified	2501.2108	0.210804	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		72.535	71.56	3	1.3049E-16	63746	160511_QHF_FH_JSI11i_3	127.92	120.67			0.7869	0.69718	13.341	3	0	Plateau	0.98358	0.79775	NaN	1	0	Median	0.7869	0.91037	NaN	1	0	Median	0.75272	0.69718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125250000	74485000	50767000	39181000	20341000	18840000	32560000	19740000	12821000	53511000	34404000	19107000	0	0	0	31555	3163	29856	195555;195556;195557	264634;264635;264636;264637;264638;264639;264640	264634			7	
LKPFFGGSTSINQISGK	2	Unmodified	1779.9519	0.95193418	4648	Q9H0X9	OSBPL5	Oxysterol-binding protein-related protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		64.58	63.58	3	6.7473E-05	56362	160511_QHF_FH_JSI11i_3	74.778	65.494			0.91513	0.6674	19.559	3	1	Plateau	0.74242	0.59381	NaN	1	1	Median	0.58564	0.6674	NaN	1	0	Median	0.91513	0.86981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143340000	87571000	55770000	48395000	36811000	11584000	33924000	20604000	13320000	61021000	30156000	30865000	0	0	0	31556	4648	29857	195558;195559;195560	264641;264642;264643;264644;264645	264641			5	
LKPFIDR	1	Unmodified	887.52289	0.52288749	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1	By matching		By MS/MS		3	0			2							1		1		31.466	30.758	3	0.017733	26613	160511_QHF_FH_JSI11i_3	46.426	24.295			0.64082	0.55992	42.229	2	0	Median	0.91006	0.75476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45124	0.41538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43766000	23530000	20236000	22661000	12795000	9866200	0	0	0	21105000	10735000	10370000	0	0	0	31557	2540	29858	195561;195562	264646	264646			1	
LKPFLGSSDCVNQISGK	2	Unmodified	1848.9404	0.94038322	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			56.318	54.765	3	0.0013573	45786	160511_QHF_FH_JSI10i_3	60.317	50.568			1.43	0.57881	61.349	3	3	Plateau	1.667	1.366	NaN	1	1	Median	0.80013	0.93429	81.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73388000	35649000	37738000	22970000	8297900	14673000	50417000	27351000	23066000	0	0	0	0	0	0	31558	4560	29859	195563;195564;195565	264647;264648;264649	264647			3	
LKPFYLVPK	2	Unmodified	1103.6743	0.67430276	3565	Q8N884	MB21D1	Cyclic GMP-AMP synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			59.267	57.735	3	0.0022582	48430	160511_QHF_FH_JSI10i_3	56.258	32.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31559	3565	29860	195566;195567	264650;264651	264650			2	
LKPGAPLK	2	Unmodified	822.53272	0.5327239	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	17.221	16.675	3	0.005503	13717	160511_QHF_FH_JSI11i_3	52.716	25.462			0.90081	0.85815	23.536	4	0	Median	1.1011	0.89009	NaN	1	0	Median	0.73694	0.82736	NaN	1	0	Median	1.2095	1.1349	NaN	1	0	Median	0.61834	0.64066	NaN	1	0	Median	585430000	335510000	249920000	179120000	88213000	90904000	102180000	64673000	37505000	120230000	59535000	60694000	183910000	123090000	60820000	31560	512	29861	195568;195569;195570;195571	264652;264653;264654;264655;264656	264652			5	
LKPGAPLKPK	3	Acetyl (K)	1089.691	0.69101545	512	O75369	FLNB	Filamin-B	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									3		1	2		38.258	28.778	3	0.0028134	15941	160513_QHF_FH_JSI11Kac_6	82.417	37.992			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11910000	11910000	0	0	0	0	0	0	0	11910000	11910000	0	0	0	0	31561	512	29862	195572;195573;195574	264657;264658;264659	264657	262		3	
LKPGAPLKPK	3	Unmodified	1047.6805	0.68045077	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	2	By MS/MS			By MS/MS	3	0			2							1			1	15.671	15.146	3	0.032597	11630	160511_QHF_FH_JSI12i_3	44.425	18.988			0.54253	0.49701	12.753	2	2	Median	0.56722	0.45415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51892	0.54391	NaN	1	1	Median	1168500000	690860000	477620000	615200000	333590000	281610000	0	0	0	0	0	0	553280000	357270000	196010000	31562	512	29862	195575;195576	264660;264661	264661			2	
LKPGDLVGVNK	2	Unmodified	1138.671	0.67100829	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	42.252	41.385	2;3	1.133E-07	34605	160511_QHF_FH_JSI10i_3	120.96	108.38			1.0055	1.0157	8.9625	10	0	Median	1.3149	1.0393	9.2265	3	0	Plateau	0.9557	1.0789	7.431	3	0	Plateau	1.1539	1.0937	10.261	2	0	Median	0.93253	0.93242	0.25263	2	0	Median	7026400000	3657700000	3368800000	1693300000	733750000	959570000	1836200000	1059300000	776890000	1203400000	602330000	601040000	2293600000	1262300000	1031300000	31563	1131	29863	195577;195578;195579;195580;195581;195582;195583;195584;195585;195586	264662;264663;264664;264665;264666;264667;264668;264669;264670;264671;264672;264673;264674;264675;264676;264677;264678;264679;264680;264681;264682;264683;264684;264685;264686;264687;264688;264689	264671			28	
LKPGEIDPNPETK	2	Unmodified	1436.7511	0.75110911	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	30.759	30.695	2;3	0.001672	25910	160511_QHF_FH_JSI12i_3	77.64	52.423			1.2079	1.2234	6.4047	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2079	1.2234	6.4047	2	0	Median	194260000	89357000	104900000	0	0	0	0	0	0	0	0	0	194260000	89357000	104900000	31564	4271	29864	195587;195588	264690;264691;264692	264692			3	
LKPGYLEATVDWFR	1	Unmodified	1693.8828	0.88279198	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	88.172	87.575	3	0.00029632	73213	160511_QHF_FH_JSI10i_3	66.285	57.102			0.81276	0.84238	15.41	4	1	Median	1.0923	0.91403	NaN	1	0	Median	0.66581	0.77635	NaN	1	0	Median	0.99213	0.94166	NaN	1	1	Median	0.63543	0.67594	NaN	1	0	Median	204350000	114990000	89357000	14515000	7948300	6566900	32901000	21545000	11356000	108590000	53214000	55380000	48338000	32285000	16053000	31565	2641	29865	195589;195590;195591;195592;195593;195594	264693;264694;264695;264696;264697;264698;264699	264695			7	
LKPLEVELR	1	Unmodified	1095.6652	0.66519463	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	48.87	47.987	2;3	1.8078E-07	42384	160511_QHF_FH_JSI10i_2	137.98	106.55			0.93154	0.9371	12.671	10	0	Median	1.3994	1.1126	8.4733	3	0	Median	0.7888	0.91682	1.928	3	0	Plateau	1.1073	1.0369	11.214	2	0	Median	0.82198	0.84247	5.3351	2	0	Median	8180300000	3741500000	4438800000	835270000	354510000	480770000	1705800000	828710000	877050000	2975700000	1190600000	1785100000	2663500000	1367700000	1295900000	31566	1678	29866	195595;195596;195597;195598;195599;195600;195601;195602;195603;195604	264700;264701;264702;264703;264704;264705;264706;264707;264708;264709;264710;264711;264712;264713;264714;264715;264716;264717;264718;264719;264720;264721	264718			22	
LKPLEVELR	1	Acetyl (K)	1137.6758	0.67575932	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.401	64.704	2	0.0083688	34471	160513_QHF_FH_JSI11Kac_5	74.173	43.988			0.014624	0.014281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.014624	0.014281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11969000	11823000	145640	0	0	0	0	0	0	11969000	11823000	145640	0	0	0	31567	1678	29866	195605	264722	264722	1700		1	
LKPLGEQER	1	Unmodified	1068.5928	0.59275797	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		14.305	13.858	3	0.019661	11215	160511_QHF_FH_JSI10i_3	38.875	26.259			1.2529	1.296	94.607	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5831	0.66384	NaN	1	0	Median	2.6921	2.53	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204960000	101470000	103490000	0	0	0	128300000	80786000	47512000	76666000	20686000	55980000	0	0	0	31568	1787	29867	195606;195607	264723;264724	264724			2	
LKPLLEK	2	Unmodified	839.54804	0.54803961	1062	P14859;Q9UKI9;P09086	POU2F1;POU2F3;POU2F2	POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2	no	no	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	27.542	26.86	3	0.0042786	21940	160511_QHF_FH_JSI12i_3	61.999	18.753			0.23663	0.26603	116.83	2	2	Median	NaN	NaN	NaN	0	0	Median	0.098556	0.11646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56815	0.60772	NaN	1	1	Median	74454000	53435000	21019000	0	0	0	26453000	22181000	4271900	0	0	0	48001000	31254000	16747000	31569	1062	29868	195608;195609;195610	264725;264726;264727	264727			3	
LKPLVPGMEVSFYK	2	Unmodified	1606.8793	0.87928651	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	1		By matching		By MS/MS	3	0			2								1		1	78.808	77.986	3	0.00016008	67546	160511_QHF_FH_JSI12i_3	76.759	61.214			1.0101	1.0689	53.582	2	0	Median	NaN	NaN	NaN	0	0	Median	1.394	1.5612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73194	0.73176	NaN	1	0	Median	83755000	39754000	44001000	0	0	0	21904000	9085000	12819000	0	0	0	61852000	30669000	31182000	31570	3706	29869	195611;195612	264728	264728			1	
LKPMQVALSEDDLTVLMK	2	Unmodified	2030.0792	0.079184883	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	93.924	93.919	3	0.00014691	81322	160511_QHF_FH_JSI12i_3	63.337	54.054			0.89945	0.93202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89945	0.93202	NaN	1	0	Median	39021000	21318000	17702000	0	0	0	0	0	0	0	0	0	39021000	21318000	17702000	31571	3196	29870	195613	264729;264730	264729			2	
LKPMYGPGYTGLK	2	Unmodified	1423.7534	0.75335771	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	46.165	45.311	3	7.4836E-05	37110	160511_QHF_FH_JSI9i_3	73.877	60.551			0.9133	0.82966	31.136	4	3	Median	0.98472	0.80036	NaN	1	0	Median	1.0351	1.2551	NaN	1	1	Median	0.64156	0.58837	NaN	1	1	Median	0.84705	0.86003	NaN	1	1	Median	365930000	194430000	171500000	111590000	57612000	53979000	86261000	39633000	46628000	71738000	44520000	27218000	96343000	52665000	43678000	31572	3920	29871	195614;195615;195616;195617	264731;264732;264733;264734;264735	264733			5	
LKPNLGNGADLPNYR	1	Unmodified	1640.8635	0.86345352	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	49.067	48.127	2;3	4.9102E-05	39279	160511_QHF_FH_JSI9i_3	98.943	91.535			0.90374	0.7825	13.356	7	0	Median	0.93105	0.75065	4.7041	2	0	Median	0.73638	0.83925	9.9014	2	0	Median	1.0206	0.95484	10.031	2	0	Median	0.71053	0.70695	NaN	1	0	Median	1384700000	657190000	727520000	462740000	223880000	238860000	513320000	265550000	247780000	365720000	148470000	217250000	42923000	19292000	23631000	31573	5497	29872	195618;195619;195620;195621;195622;195623;195624	264736;264737;264738;264739;264740;264741;264742;264743	264741			8	
LKPPANIAQPVATAATDVSNGTVK	2	Unmodified	2362.2856	0.28562392	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	69.838	69.189	3	1.9393E-08	57828	160511_QHF_FH_JSI10i_3	71.527	68.129			0.84207	0.87103	14.665	5	3	Median	1.1202	0.91367	NaN	1	0	Median	0.69587	0.81911	NaN	1	0	Median	0.96917	0.90798	27.834	2	2	Median	0.84207	0.87103	NaN	1	1	Median	107110000	61912000	45195000	17832000	9303500	8528100	16452000	10592000	5859500	58034000	31731000	26303000	14790000	10285000	4505300	31574	16	29873	195625;195626;195627;195628;195629	264744;264745;264746;264747;264748;264749;264750;264751	264748			8	
LKPPTLIHGQAPSAGLPSQK	2	Unmodified	2039.1528	0.15275925	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		51.65	50.6	3;4	7.2897E-06	42500	160511_QHF_FH_JSI10i_3	73.783	63.684			0.82102	0.78259	10.108	6	0	Median	0.84221	0.69183	2.6981	2	0	Median	0.71924	0.83042	2.151	2	0	Median	0.86247	0.80719	10.617	2	0	Median	NaN	NaN	NaN	0	0	Median	491380000	254790000	236590000	118130000	64938000	53193000	126180000	67782000	58393000	247070000	122070000	125000000	0	0	0	31575	4759	29874	195630;195631;195632;195633;195634;195635	264752;264753;264754;264755;264756;264757;264758;264759;264760;264761;264762;264763	264758			12	
LKPPTLIHGQAPSAGLPSQKPK	3	Acetyl (K)	2306.3111	0.31105081	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.307	55.101	4	8.9074E-05	29150	160513_QHF_FH_JSI9Kac_6	64.87	51.942			0.90393	0.92107	17.892	4	0	Median	0.88824	0.75985	NaN	1	0	Median	0.91988	1.1026	NaN	1	0	Median	0.83975	0.82061	NaN	1	0	Median	0.97509	1.0338	NaN	1	0	Median	166150000	91680000	74467000	24868000	16113000	8754200	65578000	31305000	34273000	44764000	24911000	19853000	30937000	19350000	11587000	31576	4759	29875	195636;195637;195638;195639	264764;264765;264766;264767;264768;264769	264766	3222		6	
LKPPVHYNGPSK	2	Unmodified	1335.7299	0.72992016	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	2	2	23.882	23.102	3;4	4.6048E-08	19306	160511_QHF_FH_JSI11i_3	136.7	121.31			0.90176	0.90922	25.902	10	4	Median	1.0311	0.8525	40.073	3	1	Median	0.85747	1.0037	9.8766	3	2	Median	1.094	1.0308	18.066	2	1	Median	0.67886	0.68989	10.031	2	0	Median	2466500000	1207800000	1258600000	797850000	348810000	449030000	828150000	454490000	373650000	486270000	210410000	275870000	354210000	194120000	160090000	31577	1857	29876	195640;195641;195642;195643;195644;195645;195646;195647;195648;195649	264770;264771;264772;264773;264774;264775;264776;264777;264778;264779;264780;264781;264782;264783;264784;264785;264786;264787;264788;264789;264790;264791;264792;264793;264794;264795	264772			26	
LKPQLLQGVYAMGFNRPSK	2	Unmodified	2146.1721	0.17211449	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	2		By MS/MS			16	0									1		1			75.866	69.495	3	0.0046882	37949	160513_QHF_FH_JSI10Kac_6	72.421	63.374			0.84328	0.97567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84328	0.97567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108710000	61441000	47270000	0	0	0	108710000	61441000	47270000	0	0	0	0	0	0	31578	5017;5423	29877	195650	264796	264796			1	
LKPQYLEELPGQLK	2	Unmodified	1654.9294	0.92940782	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	0.492		9	13							5	6	7	4	67.049	66.201	2;3	1.8946E-10	57026	160511_QHF_FH_JSI12i_3	198.57	175.93			0.53606	0.53891	17.906	14	14	Median	0.68885	0.56934	8.659	4	4	Median	0.48405	0.56448	12.386	4	4	Median	0.54527	0.5158	4.0038	3	3	Plateau	0.72862	0.74331	36.589	3	3	Median	10885000000	5668400000	5216200000	1278800000	590050000	688760000	1864100000	1110100000	754040000	3187400000	2076300000	1111100000	4554200000	1891900000	2662200000	31579	1188	29878	195651;195652;195653;195654;195655;195656;195657;195658;195659;195660;195661;195662;195663;195664;195665;195666;195667;195668;195669;195670;195671;195672	264797;264798;264799;264800;264801;264802;264803;264804;264805;264806;264807;264808;264809;264810;264811;264812;264813;264814;264815;264816;264817;264818;264819;264820;264821;264822;264823;264824	264822			28	
LKPTDVGLLAVIANNIITINK	2	Unmodified	2219.3253	0.32530389	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	3	3	3	101.02	97.416	3;4	3.4929E-37	50982	160513_QHF_FH_JSI11Kac_6	170.14	167.17			0.97487	0.90083	20.428	12	0	Median	1.0017	0.87611	25.779	3	0	Plateau	0.70668	0.80252	4.1727	3	0	Median	1.0425	0.99565	9.6395	3	0	Plateau	0.9488	0.97018	25.943	3	0	Plateau	3361300000	1743100000	1618200000	426980000	220530000	206450000	629600000	340280000	289320000	791010000	389960000	401050000	1513700000	792300000	721410000	31580	602	29879	195673;195674;195675;195676;195677;195678;195679;195680;195681;195682;195683;195684	264825;264826;264827;264828;264829;264830;264831;264832;264833;264834;264835;264836;264837;264838;264839;264840;264841;264842;264843;264844;264845	264832			21	
LKPTMAFMSGK	2	Unmodified	1209.625	0.62498608	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	47.64	46.853	2;3	2.3792E-05	39258	160511_QHF_FH_JSI10i_3	80.312	60.105			0.90731	0.85264	21.886	9	4	Median	1.0382	0.84141	1.8737	2	0	Median	0.85639	0.98977	7.4837	2	0	Median	0.85464	0.81536	37.474	2	2	Median	0.73942	0.75585	30.439	3	2	Median	5246300000	2656300000	2590000000	1245000000	558580000	686440000	729810000	348680000	381130000	1194000000	629170000	564830000	2077500000	1119800000	957610000	31581	3175	29880	195685;195686;195687;195688;195689;195690;195691;195692;195693	264846;264847;264848;264849;264850;264851;264852;264853;264854;264855;264856;264857;264858	264849			13	
LKPTMAFMSGK	2	Oxidation (M)	1225.6199	0.6199007	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	34.033	32.948	3	0.017926	27426	160511_QHF_FH_JSI9i_3	42.209	25.042			1.0729	1.1431	32.117	4	1	Median	1.5488	1.233	NaN	1	0	Median	1.0729	1.2563	24.077	2	1	Median	NaN	NaN	NaN	0	0	Median	0.69267	0.6999	NaN	1	0	Median	180120000	86966000	93158000	49780000	24939000	24842000	78908000	32693000	46215000	0	0	0	51435000	29334000	22101000	31582	3175	29880	195694;195695;195696;195697	264859;264860;264861;264862	264861		2210	4	
LKPTMAFMSGK	2	Acetyl (K)	1251.6356	0.63555076	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.304	64.948	2	0.0041937	35288	160513_QHF_FH_JSI11Kac_6	73.499	45.757			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5352100	5352100	0	0	0	0	0	0	0	5352100	5352100	0	0	0	0	31583	3175	29880	195698	264863	264863	2788		1	
LKPTMAFMSGK	2	2 Oxidation (M)	1241.6148	0.61481532	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	2	1	By MS/MS				3	0			1							1				23.905	22.585	3	0.058258	18189	160511_QHF_FH_JSI9i_3	33.204	14.247			0.58757	0.47702	NaN	1	1	Median	0.58757	0.47702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39322000	21831000	17492000	39322000	21831000	17492000	0	0	0	0	0	0	0	0	0	31584	3175	29880	195699	264864	264864		2210	1	
LKPTNLGIVLVHGYYK	2	Unmodified	1814.0454	0.045440635	745	O95985	TOP3B	DNA topoisomerase 3-beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	74.722	65.886	3;4	0.00032279	35120	160513_QHF_FH_JSI9Kac_6	84.14	71.425			0.88173	0.91583	17.122	5	5	Median	0.83412	0.71189	NaN	1	1	Median	0.95837	1.1209	NaN	1	1	Median	0.97262	0.91583	NaN	1	1	Median	0.81975	0.87949	11.446	2	2	Median	395540000	200480000	195070000	102770000	57470000	45305000	105130000	48789000	56339000	79387000	34129000	45258000	108250000	60088000	48164000	31585	745	29881	195700;195701;195702;195703;195704	264865;264866;264867;264868;264869	264866			5	
LKPTNPAAQK	2	Unmodified	1066.6135	0.61349341	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	11.341	10.992	2;3	0.00013359	8514	160511_QHF_FH_JSI10i_3	67.726	48.483			1.0469	1.0982	14.442	8	0	Median	1.4782	1.1846	0.3019	2	0	Median	0.95061	1.0929	1.3785	2	0	Median	1.2126	1.1565	8.0087	2	0	Median	0.83913	0.85273	5.4609	2	0	Median	3059600000	1528400000	1531200000	835030000	360110000	474920000	679190000	377830000	301360000	640460000	323870000	316590000	904900000	466570000	438330000	31586	1790	29882	195705;195706;195707;195708;195709;195710;195711;195712	264870;264871;264872;264873;264874;264875;264876;264877;264878;264879;264880;264881;264882	264874			13	
LKPTNPAAQKALTTPTHYK	3	Acetyl (K)	2121.1582	0.15823856	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	1	0	0	2	By MS/MS			By MS/MS	16	0									2	1			1	51.944	42.436	4	0.029996	22531	160513_QHF_FH_JSI9Kac_6	37.237	28.14			0.7907	0.76592	30.793	2	0	Median	0.71099	0.61606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87934	0.95224	NaN	1	0	Median	17887000	10324000	7563400	9188600	4946400	4242200	0	0	0	0	0	0	8698700	5377600	3321200	31587	1790	29883	195713;195714	264883	264883			1	
LKPTQNASEK	2	Unmodified	1114.5982	0.59823728	3294	Q7Z7F0	KIAA0907	UPF0469 protein KIAA0907	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			5							1	1	1	2	6.1518	5.9862	2;3	0.00073559	3888	160511_QHF_FH_JSI10i_3	51.454	24.781			0.75229	0.77477	15.488	5	0	Median	1.2814	1.0656	NaN	1	0	Median	0.70832	0.82175	NaN	1	0	Median	0.75229	0.71246	NaN	1	0	Median	0.754	0.77123	0.64694	2	0	Median	396050000	183800000	212250000	72104000	26558000	45546000	123560000	48393000	75162000	83939000	50191000	33748000	116460000	58660000	57797000	31588	3294	29884	195715;195716;195717;195718;195719	264884;264885;264886	264884			3	
LKPVELR	1	Unmodified	853.53854	0.53853756	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							4	3	1	1	23.693	22.765	3	0.0017361	18845	160511_QHF_FH_JSI10i_3	100.19	31.273			0.99717	0.96343	92.91	9	3	Median	1.2994	1.0646	128.84	4	2	Median	0.91878	1.1364	95.49	3	1	Median	0.99717	0.94614	NaN	1	0	Median	0.69921	0.70609	NaN	1	0	Median	6393100000	3094000000	3299100000	2477500000	915500000	1562000000	1812800000	1061100000	751750000	1331700000	611890000	719780000	771070000	505530000	265540000	31589	2094	29885	195720;195721;195722;195723;195724;195725;195726;195727;195728	264887;264888;264889;264890;264891;264892;264893;264894;264895;264896;264897;264898	264891			12	
LKPVELR	1	Acetyl (K)	895.5491	0.54910224	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		51.713	41.05	2	0.029142	22844	160513_QHF_FH_JSI11Kac_5	77.058	14.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27676000	27676000	0	0	0	0	0	0	0	27676000	27676000	0	0	0	0	31590	2094	29885	195729	264899	264899			1	
LKPVFIR	1	Unmodified	871.56436	0.56435838	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		38.503	37.758	3	0.030107	32798	160511_QHF_FH_JSI11i_3	40.103	17.084			0.94882	0.99191	5.3483	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82583	0.95509	NaN	1	1	Median	1.0901	1.0301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72244000	49530000	22714000	0	0	0	52867000	38713000	14154000	19377000	10817000	8559500	0	0	0	31591	1847	29886	195730;195731	264900;264901	264900			2	
LKPVHGLIFLFK	2	Unmodified	1410.8751	0.87512783	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	5.32			37						10	19	11	7	10	83.285	80.408	2;3;4	4.7773E-07	37904	160513_QHF_FH_JSI9Kac_6	121.08	115.04			0.67276	0.72054	34.448	37	37	Median	1.2313	1.0681	27.044	12	12	Plateau	0.62378	0.73124	21.614	10	10	Median	0.5467	0.52532	36.514	6	6	Median	0.61862	0.59847	41.154	9	9	Median	11621000000	6003400000	5617500000	5162300000	2328400000	2833900000	4701600000	2651400000	2050200000	1081800000	631150000	450600000	675320000	392500000	282820000	31592	5663	29887	195732;195733;195734;195735;195736;195737;195738;195739;195740;195741;195742;195743;195744;195745;195746;195747;195748;195749;195750;195751;195752;195753;195754;195755;195756;195757;195758;195759;195760;195761;195762;195763;195764;195765;195766;195767;195768;195769;195770;195771;195772;195773;195774;195775;195776;195777;195778	264902;264903;264904;264905;264906;264907;264908;264909;264910;264911;264912;264913;264914;264915;264916;264917;264918;264919;264920;264921;264922;264923;264924;264925;264926;264927;264928;264929;264930;264931;264932;264933;264934;264935;264936;264937;264938;264939;264940;264941;264942;264943;264944;264945;264946;264947;264948;264949;264950;264951;264952;264953;264954;264955;264956	264941			55	
LKPVIGVNTDPER	1	Unmodified	1436.7987	0.798728	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			42.518	40.971	3	0.00088767	34172	160511_QHF_FH_JSI10i_3	58.098	54.758			0.79822	0.76358	26.071	2	1	Median	1.1176	0.91816	NaN	1	1	Median	0.57012	0.63503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71118000	41665000	29453000	31473000	16068000	15406000	39645000	25598000	14047000	0	0	0	0	0	0	31593	2832	29888	195779;195780	264957;264958	264957			2	
LKPYFLTDGTGTVTPANASGINDGAAAVVLMK	2	Oxidation (M)	3207.6486	0.64856488	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	1	2	3	91.672	91.342	3;4	1.0319E-31	79106	160511_QHF_FH_JSI12i_3	134.51	132.27			1.105	1.026	27.35	7	2	Median	1.1447	0.92501	NaN	1	0	Median	0.67638	0.77312	NaN	1	0	Median	1.105	1.0266	0.080583	2	0	Median	1.2886	1.2955	34.12	3	2	Median	419790000	197590000	222200000	29601000	14330000	15271000	47708000	27576000	20132000	151790000	67813000	83981000	190690000	87871000	102820000	31594	4496	29889	195781;195782;195783;195784;195785;195786;195787	264959;264960;264961;264962;264963;264964;264965;264966;264967;264968;264969;264970	264969		2484	12	
LKPYFLTDGTGTVTPANASGINDGAAAVVLMK	2	Unmodified	3191.6537	0.65365025	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	2	2	3	99.22	99.137	3;4;5	8.2117E-59	85868	160511_QHF_FH_JSI12i_3	193.23	191.48			0.93621	0.92763	11.113	10	0	Median	1.138	0.92657	10.849	3	0	Median	0.68888	0.81337	7.9632	2	0	Median	1.1339	1.044	5.0215	2	0	Median	0.95046	0.98586	8.0711	3	0	Plateau	1672200000	841500000	830660000	185790000	88183000	97605000	188330000	100330000	88005000	507550000	265290000	242260000	790490000	387700000	402790000	31595	4496	29889	195788;195789;195790;195791;195792;195793;195794;195795;195796;195797	264971;264972;264973;264974;264975;264976;264977;264978;264979;264980;264981;264982;264983;264984;264985;264986;264987;264988;264989;264990;264991;264992;264993;264994;264995	264992			24	
LKPYVAAQLDVLPETFTLGDK	2	Unmodified	2317.2569	0.25694955	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			100.51	100.32	3	2.5469E-05	82960	160511_QHF_FH_JSI10i_3	70.452	62.365			0.82387	0.816	6.5307	2	2	Median	0.92128	0.77917	NaN	1	1	Median	0.73677	0.85456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25121000	14634000	10487000	10473000	5167100	5306200	14648000	9466900	5180700	0	0	0	0	0	0	31596	971	29890	195798;195799	264996;264997	264996			2	
LKPYVSYLAPESEETPLTAAQLFSEAVAPAIEK	2	Unmodified	3561.8494	0.84943275	3445	Q8IXM3	MRPL41	39S ribosomal protein L41, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			102.35	102.19	3	2.6483E-39	84787	160511_QHF_FH_JSI10i_3	129.25	114.32			0.84805	0.82943	28.709	2	0	Median	1.2337	1.0161	NaN	1	0	Median	0.58295	0.67704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59889000	28349000	31540000	21719000	8899900	12819000	38170000	19449000	18721000	0	0	0	0	0	0	31597	3445	29891	195800;195801	264998;264999;265000	264998			3	
LKQDGDSFR	1	Unmodified	1064.5251	0.52507234	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	11.01	10.83	2	0.0012766	8444	160511_QHF_FH_JSI11i_3	86.136	50.84			0.71351	0.66166	52.117	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3348	1.4948	NaN	1	0	Median	0.71351	0.66166	NaN	1	0	Median	0.58796	0.56649	NaN	1	0	Median	139270000	82427000	56844000	0	0	0	21831000	13585000	8245800	72942000	40590000	32352000	44499000	28252000	16247000	31598	2517	29892	195802;195803;195804	265001;265002	265001			2	
LKQDPPVIHELR	1	Unmodified	1443.8198	0.8197978	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			34.54	33.119	3	0.0038213	27622	160511_QHF_FH_JSI10i_3	49.298	36.938			0.682	0.76155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.682	0.76155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20180000	10178000	10002000	0	0	0	20180000	10178000	10002000	0	0	0	0	0	0	31599	5269	29893	195805	265003	265003			1	
LKQESDQLVLNQHPASDK	2	Unmodified	2049.0491	0.049082043	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	29.118	28.525	3;4	5.654E-09	25014	160511_QHF_FH_JSI10i_2	136.26	109.11			0.90765	0.86726	34.699	8	5	Median	1.377	1.1613	NaN	1	1	Median	0.68629	0.82808	51.994	3	2	Median	0.90765	0.86172	7.445	2	0	Median	0.74165	0.75355	41.061	2	2	Median	454420000	237870000	216550000	22274000	9003200	13271000	76886000	38342000	38544000	294490000	154970000	139520000	60763000	35555000	25207000	31600	1085	29894	195806;195807;195808;195809;195810;195811;195812;195813	265004;265005;265006;265007;265008;265009;265010;265011;265012;265013;265014	265011			11	
LKQQHEHK	2	Unmodified	1046.5621	0.56212655	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.83	0.687	2	3	1							2	2	2		10.015	9.6455	3	0.03862	7071	160511_QHF_FH_JSI9i_3	28.727	14.52			1.1476	1.0244	16.203	6	0	Median	1.3704	1.1235	10.178	2	0	Median	0.78072	0.94514	7.9162	2	0	Median	1.1959	1.1891	23.965	2	0	Median	NaN	NaN	NaN	0	0	Median	5062300000	2176900000	2885400000	3394800000	1335400000	2059400000	1190200000	640290000	549890000	477250000	201140000	276110000	0	0	0	31601	1003	29895	195814;195815;195816;195817;195818;195819	265015;265016	265015			2	
LKQTFLSVFWQMRYWVKGEKTSSP	3	3 Acetyl (K)	3071.5579	0.55789938	1903	P59537	TAS2R43	Taste receptor type 2 member 43	yes	yes	3	0	0	4				By MS/MS	16	0									2				2	99.499	90.056	3;4	0.0039476	49532	160513_QHF_FH_JSI12Kac_6	51.645	26.495			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1278100000	1278100000	0	0	0	0	0	0	0	0	0	0	1278100000	1278100000	0	31602	1903	29896	195820;195821	265017;265018	265018	1899;1900;1901		2	
LKREEETLDTIK	2	Unmodified	1473.8039	0.80387296	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	2		By MS/MS	By MS/MS		3	0			4								2	2		24.456	23.818	2;3	0.00040275	19882	160511_QHF_FH_JSI11i_3	72.681	53.004			0.96084	1.0441	14.301	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75705	0.90748	12.126	2	0	Median	1.1739	1.1243	2.759	2	0	Median	NaN	NaN	NaN	0	0	Median	350460000	176930000	173520000	0	0	0	96904000	58397000	38507000	253550000	118540000	135020000	0	0	0	31603	5017;5423	29897	195822;195823;195824;195825	265019;265020	265019			2	
LKSDEDEERVHEEL	1	Unmodified	1726.801	0.80097243	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	25.971	25.656	3	0.00030883	21704	160511_QHF_FH_JSI11i_3	84.842	79.772			0.834	0.85982	34.973	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2304	1.5105	NaN	1	0	Median	0.834	0.79593	NaN	1	0	Median	0.81351	0.85982	NaN	1	0	Median	194980000	95331000	99653000	0	0	0	66175000	36075000	30100000	81654000	34469000	47185000	47155000	24787000	22368000	31604	3973	29898	195826;195827;195828	265021;265022;265023;265024;265025	265021			5	
LKVEELEGER	1	Unmodified	1200.635	0.63501672	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.2743	8.6311	3	0.055414	6358	160511_QHF_FH_JSI9i_3	24.855	0.51122			1.2031	0.96072	NaN	1	0	Median	1.2031	0.96072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	248320000	127740000	120580000	248320000	127740000	120580000	0	0	0	0	0	0	0	0	0	31605	5720	29899	195829	265026	265026			1	
LKVGLQVVAVK	2	Unmodified	1152.7594	0.75942937	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			57.09	55.549	3	0.0097193	46413	160511_QHF_FH_JSI10i_3	47.559	35.346			0.38761	0.46235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38761	0.46235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8233900	6579500	1654400	0	0	0	8233900	6579500	1654400	0	0	0	0	0	0	31606	980	29900	195830	265027	265027			1	
LKWPELPK	2	Unmodified	1009.5961	0.59605244	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	57.049	56.795	3	0.017794	48868	160511_QHF_FH_JSI12i_3	42.19	24.678			1.1445	1.1591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1445	1.1591	NaN	1	0	Median	36555000	17912000	18644000	0	0	0	0	0	0	0	0	0	36555000	17912000	18644000	31607	4836	29901	195831;195832	265028;265029	265029			2	
LKYALTGDEVK	2	Acetyl (K)	1277.6867	0.68671794	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	1	0	0	1		By MS/MS	By MS/MS		13.6	0.49						2	3				3	2		60.312	50.018	2	1.5239E-07	27153	160513_QHF_FH_JSI10Kac_4	116.23	78.147			0.7587	0.90383	184.84	5	1	Median	NaN	NaN	NaN	0	0	Median	1.3152	1.541	172.25	3	1	Median	0.25285	0.24912	5.8082	2	0	Median	NaN	NaN	NaN	0	0	Median	63996000	42222000	21774000	0	0	0	27174000	10750000	16424000	36822000	31472000	5350100	0	0	0	31608	2013;1204	29902	195833;195834;195835;195836;195837	265030;265031;265032	265030	1070		3	
LKYALTGDEVKK	3	Acetyl (K)	1405.7817	0.78168095	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	51.047	40.568	3	4.4006E-05	22536	160513_QHF_FH_JSI11Kac_5	94.122	79.887			0.5787	0.62465	130.92	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2169	1.4391	0.90674	2	0	Median	0.27647	0.27288	NaN	1	0	Median	0.092056	0.10153	NaN	1	0	Median	76862000	59146000	17716000	0	0	0	13485000	6242800	7242700	55648000	45880000	9767700	7728900	7023700	705180	31609	2013;1204	29903	195838;195839;195840;195841	265033;265034;265035;265036;265037	265033	1070		5	
LKYSQSDLEQTK	2	Acetyl (K)	1480.7409	0.74093835	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		46.555	37.272	2	0.0079903	20839	160513_QHF_FH_JSI11Kac_3	59.757	52.551			0.80826	0.87386	50.226	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0551	1.2465	NaN	1	0	Median	0.61915	0.61264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24463000	13544000	10919000	0	0	0	10179000	5578200	4600600	14284000	7965600	6318600	0	0	0	31610	2560	29904	195842;195843	265038;265039	265038	2539		2	
LKYYTGNYDQYVK	2	Acetyl (K)	1695.8144	0.81443765	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		70.096	59.263	2	0.0013808	31802	160513_QHF_FH_JSI11Kac_5	83	73.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2089600	2089600	0	0	0	0	0	0	0	2089600	2089600	0	0	0	0	31611	5279	29905	195844	265040	265040	3352		1	
LLAAEPLSK	1	Unmodified	940.55933	0.55933258	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	40.381	39.584	2	0.00091672	34625	160511_QHF_FH_JSI9i_2	71.692	46.769			0.99255	1.0301	12.376	6	1	Median	1.0282	0.90716	NaN	1	0	Median	0.84106	1.0468	NaN	1	0	Median	0.92462	0.90193	16.529	2	0	Median	1.0068	1.0948	3.0888	2	1	Median	737870000	374890000	362980000	101870000	48645000	53223000	109270000	63409000	45856000	323010000	161160000	161850000	203730000	101680000	102050000	31612	3593	29906	195845;195846;195847;195848;195849;195850	265041;265042;265043;265044;265045;265046;265047;265048;265049	265046			9	
LLAAIDDIDRPK	1	Unmodified	1338.7507	0.75071518	4139	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	53.9	53.742	3	0.0025697	46051	160511_QHF_FH_JSI12i_3	59.898	52.528			0.87799	0.8244	53.002	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87799	0.8244	NaN	1	0	Median	0.89085	0.90691	74.55	2	2	Median	170980000	83958000	87027000	0	0	0	0	0	0	58716000	29874000	28842000	112270000	54084000	58185000	31613	4139	29907	195851;195852;195853	265050;265051;265052	265051			3	
LLAALLEDEGGSGRPLLQAAK	1	Unmodified	2121.1794	0.17936793	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		80.962	80.129	3	9.8047E-07	71473	160511_QHF_FH_JSI11i_3	95.094	81.668			2.079	2.0196	53.68	4	4	Median	1.3792	1.167	32.197	2	2	Median	2.4175	2.7835	NaN	1	1	Median	3.0683	2.7999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	251170000	110970000	140200000	158500000	81372000	77127000	51948000	17831000	34116000	40725000	11770000	28955000	0	0	0	31614	5616	29908	195854;195855;195856;195857	265053;265054;265055;265056;265057	265053			5	
LLAALLHSPQLVER	0	Unmodified	1558.9195	0.91951184	3031	Q69YL0	NCBP2-AS2	Uncharacterized protein NCBP2-AS2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.774	69.403	3	0.00011724	37816	160513_QHF_FH_JSI10Kac_6	97.297	74.822			1.1546	1.3856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1546	1.3856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40935000	26678000	14258000	0	0	0	40935000	26678000	14258000	0	0	0	0	0	0	31615	3031	29909	195858	265058	265058			1	
LLADLAR	0	Unmodified	770.46504	0.46503826	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	36.61	35.695	2	0.016301	31382	160511_QHF_FH_JSI10i_2	63.287	5.0412			0.84109	0.83896	11.361	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7172	0.89047	NaN	1	0	Median	0.84109	0.83896	NaN	1	0	Median	0.94779	1.0451	NaN	1	0	Median	306570000	172990000	133580000	0	0	0	87602000	49725000	37877000	144140000	77456000	66681000	74832000	45810000	29022000	31616	4844	29910	195859;195860;195861	265059;265060	265060			2	
LLADLKK	2	Unmodified	799.51674	0.51673948	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.171	17.21	2	0.052216	13822	160511_QHF_FH_JSI12i_3	55.504	0			18.88	19.037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18.88	19.037	NaN	1	1	Median	83779000	3275700	80503000	0	0	0	0	0	0	0	0	0	83779000	3275700	80503000	31617	4195	29911	195862	265061	265061			1	
LLADPTGAFGK	1	Unmodified	1088.5866	0.58660996	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.83	4	4	3				3	2		4	4	5	3	58.836	54.861	2	1.9901E-14	30461	160513_QHF_FH_JSI11Kac_4	147.51	84.028			0.97436	0.96364	11.526	16	2	Median	1.1192	0.90979	9.4101	4	1	Median	0.8138	0.94748	4.8638	4	0	Median	1.0256	1.012	16.671	5	1	Median	0.99056	1.0338	6.7379	3	0	Plateau	10460000000	5149900000	5309600000	2199200000	901890000	1297300000	2670900000	1423500000	1247400000	3346900000	1643800000	1703100000	2242600000	1180800000	1061800000	31618	1335	29912	195863;195864;195865;195866;195867;195868;195869;195870;195871;195872;195873;195874;195875;195876;195877;195878	265062;265063;265064;265065;265066;265067;265068;265069;265070;265071;265072;265073;265074;265075;265076;265077;265078;265079;265080;265081;265082;265083;265084;265085;265086;265087;265088;265089;265090;265091;265092;265093;265094;265095;265096;265097	265080			36	
LLADQAEAR	0	Unmodified	985.51926	0.51925868	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	5.76	4	4	2			4	3			4	5	4	4	19.944	15.512	2	4.3243E-07	10121	160513_QHF_FH_JSI12Kac_4	135.83	62.792			0.91413	0.98336	11.682	16	1	Median	1.3055	1.0894	16.119	4	1	Median	0.83912	0.9985	7.1188	4	0	Median	0.97457	0.98419	9.8651	4	0	Median	0.84235	0.91705	4.2338	4	0	Median	18626000000	9223000000	9402700000	4351600000	1848100000	2503600000	4762100000	2272800000	2489400000	4515100000	2234700000	2280400000	4996900000	2867500000	2129400000	31619	2129	29913	195879;195880;195881;195882;195883;195884;195885;195886;195887;195888;195889;195890;195891;195892;195893;195894;195895	265098;265099;265100;265101;265102;265103;265104;265105;265106;265107;265108;265109;265110;265111;265112;265113;265114;265115;265116;265117;265118;265119;265120;265121;265122;265123;265124;265125	265121			27	
LLADQAEARR	0	Unmodified	1141.6204	0.62036971	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.27		6	7						3	4	5	4	3	14.738	12.897	2;3	1.1442E-14	10474	160511_QHF_FH_JSI10i_3	167.12	67.987			1.1625	1.2109	13.896	16	2	Median	1.5383	1.2704	15.691	4	1	Median	1.1017	1.2707	11.216	5	0	Median	1.2766	1.2406	9.1982	4	1	Median	0.97066	0.96868	7.9337	3	0	Median	3820500000	1742200000	2078300000	935830000	363220000	572610000	2096100000	1005800000	1090200000	554530000	255360000	299180000	234060000	117780000	116290000	31620	2129	29914	195896;195897;195898;195899;195900;195901;195902;195903;195904;195905;195906;195907;195908;195909;195910;195911	265126;265127;265128;265129;265130;265131;265132;265133;265134;265135;265136;265137;265138;265139;265140;265141;265142;265143;265144	265130			19	
LLADVTHLLLK	1	Unmodified	1234.7649	0.76490868	4583	Q9C0D3	ZYG11B	Protein zyg-11 homolog B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	84.959	84.272	3	0.00052169	74103	160511_QHF_FH_JSI11i_2	72.652	66.216			0.3978	0.4756	85.932	5	5	Plateau	NaN	NaN	NaN	0	0	Median	1.0498	1.2151	132.66	2	2	Median	0.69838	0.68136	58.805	2	2	Median	0.39314	0.40837	NaN	1	1	Median	29061000	16476000	12585000	0	0	0	11139000	5748200	5390700	11434000	5823300	5610400	6488700	4904900	1583900	31621	4583	29915	195912;195913;195914;195915;195916	265145;265146;265147;265148;265149	265146			5	
LLAEAALELR	0	Unmodified	1097.6445	0.64445919	4148	Q96K21	ZFYVE19	Abscission/NoCut checkpoint regulator	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			79.447	78.742	3	0.04588	70050	160511_QHF_FH_JSI10i_2	20.777	0.99089			0.48193	0.54439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48193	0.54439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4419900	3181400	1238600	0	0	0	4419900	3181400	1238600	0	0	0	0	0	0	31622	4148	29916	195917	265150	265150			1	
LLAEAGMPSPEWTK	1	Unmodified	1528.7596	0.7595653	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.83	0.373	1	5								2		3	1	67.681	66.927	2	2.2595E-07	58987	160511_QHF_FH_JSI9i_2	93.959	66.63			0.92007	0.9172	39.361	5	4	Median	1.1008	0.94259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92007	0.9172	54.258	3	3	Median	0.68511	0.73695	NaN	1	0	Median	147220000	76678000	70547000	20430000	9714500	10715000	0	0	0	94749000	49359000	45389000	32047000	17604000	14443000	31623	3798	29917	195918;195919;195920;195921;195922;195923	265151;265152;265153;265154;265155;265156;265157;265158	265155			8	
LLAEALNQVTQR	0	Unmodified	1354.7569	0.75686319	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	56.462	56.38	2	4.1841E-05	49783	160511_QHF_FH_JSI10i_2	87.298	63.53			0.71934	0.7409	41.793	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1759	1.0606	51.338	2	2	Median	0.71934	0.7409	NaN	1	1	Median	137330000	67290000	70039000	0	0	0	0	0	0	87265000	39650000	47616000	50064000	27641000	22423000	31624	2232	29918	195924;195925;195926;195927	265159;265160;265161;265162	265161			4	
LLAEGFDDETEDQQLR	0	Unmodified	1877.8643	0.86430096	5457	Q9UPM8	AP4E1	AP-4 complex subunit epsilon-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.459	58.803	2	0.0006813	53503	160511_QHF_FH_JSI12i_1	91.03	68.112			0.91612	0.96076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91612	0.96076	NaN	1	1	Median	20889000	13911000	6977500	0	0	0	0	0	0	0	0	0	20889000	13911000	6977500	31625	5457	29919	195928	265163	265163			1	
LLAEGHPDPDAELQR	0	Unmodified	1659.8216	0.82164829	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	39.224	38.283	2;3	6.9225E-15	32657	160511_QHF_FH_JSI12i_2	163.78	149.22			1.2634	1.2905	23.87	6	1	Median	1.2151	1.0211	NaN	1	0	Median	0.72717	0.893	NaN	1	0	Median	1.5135	1.5498	8.0665	2	1	Median	1.1581	1.2905	17.383	2	0	Median	607240000	296960000	310270000	22971000	9944900	13027000	27376000	14932000	12444000	312180000	138550000	173630000	244710000	133540000	111170000	31626	1679	29920	195929;195930;195931;195932;195933;195934	265164;265165;265166;265167;265168;265169;265170;265171;265172;265173	265165			10	
LLAEILR	0	Unmodified	826.52764	0.52763852	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	56.046	55.472	2	0.0087278	48084	160511_QHF_FH_JSI11i_2	85.359	5.4203			0.5916	0.59467	90.196	6	6	Median	0.53352	0.42151	NaN	1	1	Median	2.2314	2.7435	NaN	1	1	Median	0.44282	0.44525	42.815	2	2	Median	1.1389	1.179	98.684	2	2	Median	3205900000	1761700000	1444200000	531760000	450800000	80958000	563650000	240670000	322980000	1183700000	645610000	538120000	926790000	424650000	502140000	31627	1544	29921	195935;195936;195937;195938;195939;195940	265174;265175;265176;265177;265178;265179	265176			6	
LLAELPASVHALTGVDLSK	1	Unmodified	1933.0884	0.088427662	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	90.601	89.907	3	4.3996E-05	77486	160511_QHF_FH_JSI12i_2	71.073	44.044			0.67222	0.69717	21.82	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80982	0.81348	NaN	1	1	Median	0.558	0.59749	NaN	1	1	Median	82537000	46401000	36135000	0	0	0	0	0	0	40696000	18272000	22424000	41841000	28129000	13711000	31628	2523	29922	195941;195942;195943	265180;265181;265182	265181			3	
LLAEMDSQFDSTTGFLGK	1	Unmodified	1958.9295	0.92954376	258	O15155	BET1	BET1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								1	4	2	2	87.665	87.255	2;3	6.0866E-11	77017	160511_QHF_FH_JSI9i_2	153.39	101.39			0.63993	0.68753	87.828	9	9	Median	0.34987	0.30754	NaN	1	1	Median	1.2634	1.4848	90.669	4	4	Median	0.64513	0.63055	131.17	2	2	Median	0.38636	0.42484	68.08	2	2	Median	285320000	119720000	165600000	12880000	10380000	2500200	166160000	63946000	102220000	51183000	21001000	30182000	55097000	24394000	30704000	31629	258	29923	195944;195945;195946;195947;195948;195949;195950;195951;195952	265183;265184;265185;265186;265187;265188;265189;265190;265191	265189			9	
LLAEMSSFCGDMEK	1	Unmodified	1616.6885	0.68845055	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	67.281	66.344	2	5.2105E-06	57108	160511_QHF_FH_JSI12i_2	134.75	117.72			1.3106	1.3775	104.28	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65446	0.65898	NaN	1	1	Median	2.6248	2.8796	NaN	1	1	Median	46061000	24441000	21620000	0	0	0	0	0	0	24373000	18575000	5797900	21688000	5866100	15822000	31630	4575	29924	195953;195954	265192;265193	265192			2	
LLAENNEIISNIR	0	Unmodified	1497.8151	0.81510635	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.63	61.705	2	0.00011104	53718	160511_QHF_FH_JSI11i_2	90.685	47.173			1.1015	0.98057	21.266	3	2	Median	1.1015	0.95911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92038	0.98057	NaN	1	0	Median	1.2624	1.401	NaN	1	1	Median	73951000	34559000	39392000	15129000	6624400	8504500	0	0	0	38612000	21019000	17593000	20210000	6916100	13294000	31631	2755	29925	195955;195956;195957;195958	265194;265195;265196;265197;265198	265196			5	
LLAEPVPGIK	1	Unmodified	1035.6328	0.63283187	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.7	4	5	1				3	1		4	3	3	4	58.637	54.908	2	1.0972E-05	48397	160511_QHF_FH_JSI10i_2	114.5	74.229			0.95091	1.0241	35.574	14	2	Median	0.96828	0.80506	55.023	4	1	Median	0.81496	0.98261	10.282	3	1	Median	1.3116	1.2995	31.606	3	0	Median	0.82338	0.90225	19.381	4	0	Median	6722800000	3540400000	3182400000	2113200000	1135200000	977920000	1310300000	729470000	580790000	1817400000	921010000	896340000	1482000000	754640000	727330000	31632	1937	29926	195959;195960;195961;195962;195963;195964;195965;195966;195967;195968;195969;195970;195971;195972	265199;265200;265201;265202;265203;265204;265205;265206;265207;265208;265209;265210;265211;265212;265213;265214;265215;265216;265217	265217			19	
LLAEPVPGIKAEPDESNAR	1	Acetyl (K)	2047.0586	0.058584096	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	1	0	0	1				By MS/MS	13	0						2							2	74.672	66.256	3	0.037971	33064	160513_QHF_FH_JSI12Kac_3	38.017	28.612			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1290700	1290700	0	0	0	0	0	0	0	0	0	0	1290700	1290700	0	31633	1937	29927	195973;195974	265218;265219	265218			2	
LLAEQQNK	1	Unmodified	942.51345	0.51344502	5146	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.583	10.199	2	0.0070493	8120	160511_QHF_FH_JSI12i_1	60.709	26.896			0.99622	1.0139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99622	1.0139	NaN	1	0	Median	86945000	42324000	44621000	0	0	0	0	0	0	0	0	0	86945000	42324000	44621000	31634	5146	29928	195975	265220	265220			1	
LLAESVTEVEIFGK	1	Unmodified	1533.829	0.82902508	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.49	85.818	2	8.0385E-07	75425	160511_QHF_FH_JSI11i_2	136.96	112.1			0.49658	0.55985	34.618	4	1	Median	0.79193	0.69566	NaN	1	0	Median	0.41191	0.5112	NaN	1	1	Median	0.59865	0.61313	NaN	1	0	Median	0.2862	0.31594	NaN	1	0	Median	87753000	59716000	28037000	13267000	6666600	6600400	19307000	13330000	5976300	40271000	27634000	12637000	14908000	12085000	2822800	31635	2517	29929	195976;195977;195978;195979	265221;265222;265223;265224;265225	265223			5	
LLAETHYQLGLAYGYNSQYDEAVAQFSK	1	Unmodified	3178.5247	0.52474457	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	4	3	90.828	90.474	3;4	3.6942E-32	80171	160511_QHF_FH_JSI10i_2	148.04	141.61			1.1023	1.0951	26.742	7	0	Median	1.1023	0.92956	NaN	1	0	Median	0.62626	0.78858	NaN	1	0	Median	1.1887	1.1822	10.824	2	0	Median	1.013	1.0605	33.588	3	0	Plateau	339790000	172190000	167600000	39973000	20448000	19525000	40779000	23013000	17766000	115710000	57177000	58535000	143320000	71552000	71771000	31636	1649	29930	195980;195981;195982;195983;195984;195985;195986;195987;195988;195989	265226;265227;265228;265229;265230;265231;265232;265233;265234;265235;265236;265237;265238;265239;265240;265241;265242;265243;265244;265245;265246;265247;265248	265243			23	
LLAETVAPAVR	0	Unmodified	1138.671	0.67100829	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.12	6.37	4	1					2	1		1	1	3	3	51.471	46.898	2	8.798E-10	42612	160511_QHF_FH_JSI11i_1	137.14	106.97			0.99315	1.0883	12.949	8	2	Median	1.4444	1.1827	NaN	1	0	Median	0.91718	1.0899	NaN	1	0	Median	0.96521	0.9455	17.747	3	2	Median	1.0219	1.1635	11.642	3	0	Plateau	828120000	417370000	410750000	43200000	18458000	24742000	179020000	95482000	83537000	201020000	101200000	99812000	404890000	202220000	202660000	31637	4399	29931	195990;195991;195992;195993;195994;195995;195996;195997	265249;265250;265251;265252;265253;265254;265255;265256;265257	265249			9	
LLAEVTLK	1	Unmodified	885.55352	0.55351892	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	50.869	49.908	2	0.028056	42889	160511_QHF_FH_JSI12i_2	42.109	14.584			1.7592	1.8444	37.021	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3781	2.3963	NaN	1	0	Median	1.3013	1.4196	NaN	1	0	Median	62622000	21609000	41013000	0	0	0	0	0	0	24101000	6100300	18001000	38521000	15509000	23012000	31638	5502	29932	195998;195999	265258	265258			1	
LLAFLYSGGHR	0	Unmodified	1232.6666	0.66659162	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	1	3	66.775	57.54	2;3	1.8816E-14	31956	160513_QHF_FH_JSI10Kac_6	143.39	130.82			0.99678	1.0878	82.156	7	5	Median	0.50477	0.43475	44.688	2	2	Median	2.5637	3.0238	NaN	1	1	Median	1.1984	1.1644	NaN	1	0	Median	0.99678	1.0878	78.953	3	2	Median	406730000	197250000	209480000	60966000	40893000	20073000	169110000	62893000	106220000	69171000	31146000	38026000	107480000	62317000	45159000	31639	3359	29933	196000;196001;196002;196003;196004;196005;196006	265259;265260;265261;265262;265263;265264;265265	265265			7	
LLAGAVK	1	Unmodified	670.43776	0.43776088	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			28.79	27.862	2	0.053947	24181	160511_QHF_FH_JSI10i_2	42.124	42.124			0.81644	0.97847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81644	0.97847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2959600000	1355000000	1604700000	0	0	0	2959600000	1355000000	1604700000	0	0	0	0	0	0	31640	4610	29934	196007	265266	265266			1	
LLAGEDGTSER	0	Unmodified	1146.5517	0.55168102	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.145	16.664	2	0.00016529	14302	160511_QHF_FH_JSI12i_1	82.749	66.605			1.1551	1.0441	23.392	4	0	Median	1.0792	0.88232	NaN	1	0	Median	0.66542	0.78971	NaN	1	0	Median	1.2575	1.2355	NaN	1	0	Median	1.2364	1.2487	NaN	1	0	Median	512680000	244990000	267690000	129120000	56362000	72763000	133130000	79124000	54002000	119970000	51701000	68266000	130460000	57807000	72657000	31641	5463	29935	196008;196009;196010;196011	265267;265268;265269;265270;265271;265272;265273	265270			7	
LLAGLHVLLSK	1	Unmodified	1162.7438	0.74377931	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	2		2	71.822	70.745	3	0.00016964	59256	160511_QHF_FH_JSI10i_3	75.695	65.742			0.1802	0.18487	29.312	3	3	Plateau	0.25044	0.21411	NaN	1	1	Median	0.2683	0.32525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1802	0.18487	NaN	1	1	Median	32064000	26531000	5532800	8003000	6102800	1900200	7337800	5926400	1411500	0	0	0	16723000	14502000	2221200	31642	3430	29936	196012;196013;196014;196015;196016	265274;265275;265276;265277;265278	265275			5	
LLAHEIFEK	1	Unmodified	1098.6073	0.6073454	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.7	0.458		3	7							1	1	5	3	42.597	42.281	2;3	0.0023808	36455	160511_QHF_FH_JSI11i_2	50.353	37			1.2221	1.1201	62	10	7	Median	1.2525	1.0748	NaN	1	0	Median	0.82005	1.0116	NaN	1	0	Median	1.3522	1.2482	46.882	5	4	Median	0.65018	0.65844	99.472	3	3	Median	699110000	265560000	433550000	37397000	16145000	21251000	46773000	26744000	20028000	351660000	116690000	234970000	263290000	105990000	157300000	31643	3466	29937	196017;196018;196019;196020;196021;196022;196023;196024;196025;196026	265279;265280;265281;265282;265283;265284;265285;265286	265283			8	
LLAHQKPPK	2	Unmodified	1030.6287	0.62874955	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	7.4686	7.1862	2;3	3.7975E-07	4519	160511_QHF_FH_JSI12i_3	144.83	129.17			1.1077	1.0559	14.981	9	3	Median	1.2753	1.0177	15.475	3	2	Median	0.77711	0.87904	4.8806	2	0	Median	1.2503	1.1971	15.041	2	1	Median	1.0677	1.0799	3.176	2	0	Median	3669400000	1758200000	1911200000	1276400000	560240000	716170000	898620000	444300000	454320000	709520000	329510000	380010000	784870000	424180000	360700000	31644	1129	29938	196027;196028;196029;196030;196031;196032;196033;196034;196035	265287;265288;265289;265290;265291;265292;265293;265294;265295;265296;265297;265298;265299;265300;265301;265302;265303;265304	265300			18	
LLAHQKPPK	2	Acetyl (K)	1072.6393	0.63931423	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		20.838	11.682	3	0.018828	8030	160513_QHF_FH_JSI11Kac_6	46.462	35.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3155800	3155800	0	0	0	0	0	0	0	3155800	3155800	0	0	0	0	31645	1129	29938	196036	265305	265305	979		1	
LLAILYSIVDSR	0	Unmodified	1361.7919	0.79185171	391	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	93.765	84.352	2	0.00097678	45727	160513_QHF_FH_JSI12Kac_6	98.943	78.072			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123280000	0	123280000	0	0	0	0	0	0	62249000	0	62249000	61031000	0	61031000	31646	391	29939	196037;196038	265306;265307	265307			2	
LLAIPVEK	1	Unmodified	881.5586	0.5586043	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	56.098	55.149	2	0.048848	48704	160511_QHF_FH_JSI10i_2	37.53	20.145			0.86986	0.86866	16.247	4	0	Median	0.95575	0.82239	NaN	1	0	Median	0.75016	0.91753	NaN	1	0	Median	0.79169	0.77653	NaN	1	0	Median	1.0238	1.1228	NaN	1	0	Median	212970000	122630000	90342000	43471000	23283000	20187000	43984000	25021000	18964000	64952000	37609000	27343000	60567000	36718000	23849000	31647	560	29940	196039;196040;196041;196042	265308	265308			1	
LLAIQAK	1	Unmodified	755.49052	0.49052473	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	31.964	31.178	2	0.049359	26396	160511_QHF_FH_JSI11i_2	43	18.002			0.8913	0.80244	26.557	5	0	Median	0.9202	0.80244	NaN	1	0	Median	0.56898	0.7033	NaN	1	0	Median	0.75553	0.73528	18.869	2	0	Median	1.1518	1.2814	NaN	1	0	Median	380110000	209580000	170530000	57078000	28848000	28231000	81363000	51882000	29481000	157130000	82909000	74218000	84538000	45938000	38600000	31648	5330	29941	196043;196044;196045;196046;196047	265309	265309			1	
LLAITELLQQK	1	Unmodified	1268.7704	0.77038799	1185	P20936	RASA1	Ras GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.216	93.193	2	0.00066826	80791	160511_QHF_FH_JSI12i_3	82.749	60.663			0.61237	0.60358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61237	0.60358	NaN	1	1	Median	30422000	17681000	12741000	0	0	0	0	0	0	0	0	0	30422000	17681000	12741000	31649	1185	29942	196048	265310	265310			1	
LLALIYLAHASDVLENAFAPLLDEQYDLATK	1	Unmodified	3429.8072	0.80717401	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									6	4	2			102.64	94.6	3;4	9.0447E-107	57261	160513_QHF_FH_JSI10Kac_6	223.28	206.84			0.68907	0.69954	62.854	6	4	Median	0.62287	0.53934	79.994	4	4	Median	0.77414	0.92154	9.4413	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1905500000	1026600000	878850000	559070000	265670000	293390000	1346400000	760950000	585460000	0	0	0	0	0	0	31650	4717	29943	196049;196050;196051;196052;196053;196054	265311;265312;265313;265314;265315;265316;265317;265318	265316			8	
LLALLDALASHK	1	Unmodified	1263.7551	0.75507227	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.163	89.597	3	3.9318E-05	79752	160511_QHF_FH_JSI11i_3	97.911	88.907			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65669000	65669000	0	12470000	12470000	0	12464000	12464000	0	15516000	15516000	0	25219000	25219000	0	31651	3033	29944	196055;196056;196057;196058	265319;265320;265321;265322	265319			4	
LLALLFEVLQQDK	1	Unmodified	1528.8865	0.88648038	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	4	3	1	100.1	95.669	2;3	4.2182E-47	53642	160513_QHF_FH_JSI10Kac_6	221.5	166.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	487100000	378810000	108290000	66807000	66807000	0	232270000	123980000	108290000	120970000	120970000	0	67040000	67040000	0	31652	5666	29945	196059;196060;196061;196062;196063;196064;196065;196066;196067;196068	265323;265324;265325;265326;265327;265328;265329;265330;265331;265332;265333	265332			11	
LLALLVIPPAITPGTDQLGMFTHK	1	Unmodified	2545.4342	0.43420241	4504	Q9BWS9	CHID1	Chitinase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	2	3	97.82	89.906	3;4	2.9294E-52	50158	160513_QHF_FH_JSI11Kac_6	179.36	174.81			1.2554	1.2031	197.44	9	3	Median	1.2789	1.0893	14.058	2	0	Median	0.056499	0.065216	409.44	2	1	Median	1.4328	1.3827	18.107	2	0	Median	1.8521	1.9546	32.356	3	2	Plateau	2114100000	1649700000	464330000	244180000	124100000	120080000	1338800000	1287300000	51435000	359140000	167580000	191550000	172000000	70735000	101270000	31653	4504	29946	196069;196070;196071;196072;196073;196074;196075;196076;196077	265334;265335;265336;265337;265338;265339;265340;265341;265342	265335			9	
LLALNPDAVELFK	1	Unmodified	1441.8181	0.81806646	4401	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.72	100.62	2	4.269E-23	86536	160511_QHF_FH_JSI12i_2	153.12	107.4			1.0377	1.0898	9.8517	3	0	Plateau	1.0377	0.90132	NaN	1	0	Median	0.76666	0.9471	NaN	1	0	Median	1.0796	1.0898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116460000	68451000	48006000	28441000	15191000	13250000	30965000	19176000	11790000	57051000	34084000	22967000	0	0	0	31654	4401	29947	196078;196079;196080;196081	265343;265344;265345;265346;265347;265348;265349	265343			7	
LLALNSLYSPK	1	Unmodified	1217.702	0.70197407	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.55	3	6	4					4	4	4	5	7	5	73.973	69.908	2;3	5.2702E-18	61390	160511_QHF_FH_JSI12i_3	159.79	115.98			0.93692	0.92791	20.056	18	0	Median	1.1605	0.98195	15.181	4	0	Median	0.75699	0.91002	22.785	5	0	Median	0.91315	0.86955	18.123	5	0	Median	1.0224	1.0824	28.862	4	0	Median	5097700000	2501500000	2596200000	878640000	405660000	472980000	1126500000	555700000	570820000	1914400000	951790000	962640000	1178100000	588310000	589790000	31655	2094	29948	196082;196083;196084;196085;196086;196087;196088;196089;196090;196091;196092;196093;196094;196095;196096;196097;196098;196099;196100;196101;196102	265350;265351;265352;265353;265354;265355;265356;265357;265358;265359;265360;265361;265362;265363;265364;265365;265366;265367;265368;265369;265370;265371;265372;265373;265374;265375;265376;265377;265378;265379;265380;265381;265382;265383	265379			34	
LLALSGPGGGR	0	Unmodified	996.57163	0.5716286	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			41.047	39.527	2	0.0002559	32282	160511_QHF_FH_JSI9i_3	78.516	34.167			0.89837	0.88061	13.957	2	0	Median	0.95992	0.79785	NaN	1	0	Median	0.84077	0.97195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170870000	83163000	87711000	100230000	44676000	55553000	70644000	38487000	32158000	0	0	0	0	0	0	31656	4686	29949	196103;196104	265384;265385;265386;265387	265387			4	
LLALVPMGIPR	0	Unmodified	1178.7209	0.72093537	4245	Q96SQ9	CYP2S1	Cytochrome P450 2S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	90.975	90.323	2	0.0075044	78094	160511_QHF_FH_JSI12i_2	50.878	39.388			1.5275	1.6848	35.361	5	1	Median	1.5275	1.2847	NaN	1	0	Median	1.9491	2.3192	45.198	2	1	Median	1.7542	1.7947	NaN	1	0	Median	1.3489	1.4252	NaN	1	0	Median	85336000	34424000	50912000	8629000	4256800	4372100	42574000	14969000	27605000	20905000	7278300	13627000	13228000	7920200	5308000	31657	4245	29950	196105;196106;196107;196108;196109	265388;265389;265390;265391;265392	265388			3	
LLALYNQGHIK	1	Unmodified	1268.7241	0.7241065	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.08		3	13						7	6	4	6	7	45.754	43.222	2;3	6.4185E-10	36221	160511_QHF_FH_JSI10i_3	128.27	123.57			0.80409	0.88571	77.904	20	12	Median	1.0685	0.9041	70.493	5	4	Median	0.77281	0.88571	22.081	4	0	Median	0.99905	0.93254	81.173	5	3	Median	0.76385	0.82403	112.94	6	5	Median	6084500000	2955500000	3129000000	1186000000	471140000	714840000	1012100000	561060000	451080000	1753500000	809620000	943890000	2132800000	1113600000	1019200000	31658	4279	29951	196110;196111;196112;196113;196114;196115;196116;196117;196118;196119;196120;196121;196122;196123;196124;196125;196126;196127;196128;196129;196130;196131;196132	265393;265394;265395;265396;265397;265398;265399;265400;265401;265402;265403;265404;265405;265406;265407;265408;265409;265410;265411;265412;265413;265414;265415;265416;265417;265418	265398			25	
LLAMLEQK	1	Oxidation (M)	960.5314	0.53140327	4040	Q96EA4	SPDL1	Protein Spindly	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			40.067	30.247	2	0.041275	17504	160513_QHF_FH_JSI10Kac_4	59.205	20.967			0.077848	0.093412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.077848	0.093412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17450000	15461000	1988700	0	0	0	17450000	15461000	1988700	0	0	0	0	0	0	31659	4040	29952	196133	265419	265419			1	
LLANGFNECILLFSDLPEIDIER	0	Unmodified	2690.3626	0.36255361	3731	Q8TEA7	TBCK	TBC domain-containing protein kinase-like protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		91.105	91.105	3	0.03978	81262	160511_QHF_FH_JSI11i_3	19.549	12.188			1.1852	1.1359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1852	1.1359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	301640000	147540000	154100000	0	0	0	0	0	0	301640000	147540000	154100000	0	0	0	31660	3731	29953	196134	265420	265420			1	
LLANMVYQYK	1	Unmodified	1241.6478	0.64783001	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.54		4	4					3	4	4	4	4	3	63.16	58.127	2	7.715E-12	30688	160513_QHF_FH_JSI9Kac_6	148.38	102.7			1.017	1.0005	28.697	15	1	Median	1.087	1.0546	16.833	4	0	Linear	0.91277	1.05	8.8352	4	0	Median	0.95933	0.91137	23.759	4	0	Median	1.0321	1.0871	50.743	3	1	Median	5747800000	2906400000	2841400000	1152800000	523560000	629240000	1128700000	627930000	500730000	2040200000	1099800000	940410000	1426100000	655070000	771050000	31661	1303	29954	196135;196136;196137;196138;196139;196140;196141;196142;196143;196144;196145;196146;196147;196148;196149	265421;265422;265423;265424;265425;265426;265427;265428;265429;265430;265431;265432;265433;265434;265435;265436;265437;265438;265439;265440;265441;265442;265443;265444;265445;265446;265447;265448;265449	265443			29	
LLANMVYQYK	1	Oxidation (M)	1257.6427	0.64274463	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.479								5	9	3	5	2	4	54.227	44.411	2	5.3803E-05	23874	160513_QHF_FH_JSI11Kac_6	101.99	74.874			0.92908	0.92935	11.033	13	3	Median	1.0795	0.93798	2.9125	3	0	Median	0.76843	0.91779	12.056	4	2	Median	0.88692	0.86359	10.379	2	0	Median	0.84232	0.94616	15.733	4	1	Median	128380000	65496000	62884000	40022000	17835000	22187000	32528000	18163000	14364000	28752000	14531000	14221000	27079000	14967000	12112000	31662	1303	29954	196150;196151;196152;196153;196154;196155;196156;196157;196158;196159;196160;196161;196162;196163	265450;265451;265452;265453;265454;265455;265456;265457;265458;265459;265460;265461;265462;265463;265464;265465	265451		958	16	
LLANQQVFHISCFR	0	Unmodified	1731.8879	0.88789414	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	74.839	65.396	3	0.0051003	34296	160513_QHF_FH_JSI12Kac_6	51.073	39.802			0.9151	0.94659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9151	0.94659	NaN	1	1	Median	18968000	12306000	6661700	0	0	0	0	0	0	0	0	0	18968000	12306000	6661700	31663	5293	29955	196164	265466	265466			1	
LLAPEAGSHPQQTQK	1	Unmodified	1603.8318	0.83181904	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.43		6	6					4		2	4	6	4	20.543	17.793	2;3	1.4685E-06	15020	160511_QHF_FH_JSI11i_3	128.01	90.824			1.0099	0.99183	36.826	15	4	Median	1.1226	0.94945	7.971	2	0	Median	0.58952	0.68106	36.628	3	1	Median	1.2378	1.1955	36.894	6	3	Median	1.1202	1.2019	27.393	4	0	Median	1427400000	660420000	766950000	156340000	63094000	93250000	175040000	107190000	67847000	562570000	268610000	293960000	533420000	221530000	311900000	31664	3660	29956	196165;196166;196167;196168;196169;196170;196171;196172;196173;196174;196175;196176;196177;196178;196179;196180	265467;265468;265469;265470;265471;265472;265473;265474;265475;265476;265477;265478;265479;265480;265481;265482;265483;265484;265485;265486;265487;265488;265489;265490	265470			24	
LLAPHIGR	0	Unmodified	875.53412	0.53412088	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	29.875	29.173	3	0.0038631	24432	160511_QHF_FH_JSI10i_3	42.869	31.648			0.99143	0.9531	28.119	4	0	Median	1.2891	1.0285	NaN	1	0	Median	0.76249	0.8832	NaN	1	0	Median	1.2997	1.2606	NaN	1	0	Median	0.6188	0.64676	NaN	1	0	Median	376680000	186190000	190490000	148650000	65010000	83642000	117370000	63707000	53664000	63768000	29446000	34322000	46889000	28031000	18858000	31665	1790	29957	196181;196182;196183;196184	265491;265492;265493;265494	265491			4	
LLAPLGLHLLPYSPR	0	Unmodified	1658.9872	0.98719747	2382	Q13286	CLN3	Battenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	1	2	95.595	93.59	3	0.00030514	86212	160511_QHF_FH_JSI11i_3	62.287	55.248			0.86317	0.90426	17.821	5	0	Median	1.4597	1.2335	NaN	1	0	Median	0.80031	0.9175	NaN	1	0	Median	0.86719	0.80336	NaN	1	0	Median	0.81378	0.84636	9.359	2	0	Median	97990000	52072000	45918000	11170000	4837800	6332400	11366000	5712700	5652800	14916000	9186800	5729100	60539000	32335000	28204000	31666	2382	29958	196185;196186;196187;196188;196189	265495;265496;265497;265498;265499;265500;265501;265502	265496			8	
LLAPPGR	0	Unmodified	722.44391	0.44390889	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		23.016	22.843	2	0.055002	19338	160511_QHF_FH_JSI11i_3	46.766	31.13			1.0031	0.98357	11.808	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0031	0.98357	11.808	2	1	Median	NaN	NaN	NaN	0	0	Median	197460000	93363000	104090000	0	0	0	0	0	0	197460000	93363000	104090000	0	0	0	31667	3649	29959	196190;196191	265503;265504	265503			2	
LLAQDQGQGAPLLEPAP	0	Unmodified	1716.9046	0.90464964	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5	4.9	3			2						1	2		2	75.756	73.239	2	4.1888E-06	67241	160511_QHF_FH_JSI10i_1	134.98	122.76			1.0797	1.1297	12.713	4	1	Median	1.1239	0.93838	NaN	1	0	Median	1.0373	1.2267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0659	1.1297	9.9711	2	1	Median	672970000	310820000	362150000	209490000	92459000	117030000	216590000	94216000	122370000	0	0	0	246890000	124140000	122740000	31668	2629	29960	196192;196193;196194;196195;196196	265505;265506;265507;265508;265509;265510;265511	265507			7	
LLAQLAQECQEQR	0	Unmodified	1585.7882	0.78823967	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.632	40.173	2	0.0093567	34461	160511_QHF_FH_JSI11i_2	46.606	29.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31669	2180	29961	196197	265512	265512			1	
LLAQLLGTSEEDSMVGTLYDK	1	Unmodified	2282.1352	0.13517944	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	99.294	99.051	2	1.1059E-17	85162	160511_QHF_FH_JSI12i_2	142.85	123.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3613900	0	3613900	0	0	0	0	0	0	0	0	0	3613900	0	3613900	31670	4834	29962	196198	265513	265513			1	
LLAQQHPPPDR	0	Unmodified	1270.6782	0.67821894	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		20.569	11.413	3	0.053686	7927	160513_QHF_FH_JSI11Kac_6	21.23	13.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31671	5646	29963	196199	265514	265514			1	
LLAQQLVSPVK	1	Unmodified	1194.7336	0.73360855	3410	Q8IVS2	MCAT	Malonyl-CoA-acyl carrier protein transacylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.577	58.655	2	1.2182E-05	50821	160511_QHF_FH_JSI11i_2	107.21	90.435			0.97498	1.0982	10.697	4	0	Median	1.3341	1.1037	NaN	1	0	Median	0.89551	1.0927	NaN	1	0	Median	0.91419	0.8976	NaN	1	0	Median	1.0398	1.1321	NaN	1	0	Median	154210000	74376000	79833000	25635000	10814000	14822000	35228000	17580000	17648000	55509000	25122000	30387000	37836000	20860000	16976000	31672	3410	29964	196200;196201;196202;196203	265515;265516;265517;265518	265517			4	
LLASADDFGK	1	Unmodified	1035.5237	0.52367535	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.685	6	2	1							2	2	3	2	42.393	41.641	2	5.2838E-06	37902	160511_QHF_FH_JSI12i_1	108.98	70.844			0.83556	0.79985	21.101	9	1	Median	1.0464	0.8515	11.094	2	0	Median	0.65667	0.76574	33.796	2	0	Median	0.82022	0.79985	17.265	3	1	Median	0.67565	0.73473	35.092	2	0	Median	2103100000	1196300000	906770000	241700000	124060000	117630000	584680000	370430000	214240000	868020000	456610000	411410000	408710000	245230000	163480000	31673	737	29965	196204;196205;196206;196207;196208;196209;196210;196211;196212	265519;265520;265521;265522;265523;265524;265525;265526;265527;265528;265529;265530	265523			12	
LLASAGQDNVVR	0	Unmodified	1241.6728	0.67279921	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.48	3	4	1				3			2	4	3	2	34.304	30.79	2	2.4961E-07	26185	160511_QHF_FH_JSI12i_2	130.66	76.688			1.1429	1.1956	22.147	10	2	Median	1.6458	1.3643	9.3991	2	0	Median	0.83577	0.95122	23.308	3	1	Median	1.4822	1.4649	15.671	3	1	Plateau	0.82793	0.88839	0.86676	2	0	Median	1491500000	731360000	760160000	249200000	99842000	149360000	466410000	265580000	200830000	539870000	245910000	293960000	236030000	120020000	116010000	31674	2902	29966	196213;196214;196215;196216;196217;196218;196219;196220;196221;196222;196223	265531;265532;265533;265534;265535;265536;265537;265538;265539;265540;265541;265542	265534			11	
LLASANLEEVTMK	1	Unmodified	1417.7487	0.74866627	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							3	3	3	1	65.388	64.619	2	5.1946E-22	56865	160511_QHF_FH_JSI9i_2	202.16	162.85			0.69322	0.84311	34.895	9	2	Median	0.67121	0.54353	53.869	3	1	Median	0.63725	0.75891	14.881	2	0	Median	0.99158	1.002	6.0074	3	0	Median	0.54993	0.60811	NaN	1	1	Median	2162500000	1298000000	864450000	351640000	194100000	157530000	592100000	379530000	212570000	654880000	320600000	334290000	563860000	403800000	160060000	31675	1444	29967	196224;196225;196226;196227;196228;196229;196230;196231;196232;196233	265543;265544;265545;265546;265547;265548;265549;265550;265551;265552;265553;265554;265555	265550			13	
LLASANLEEVTMK	1	Oxidation (M)	1433.7436	0.74358089	1444	P35659	DEK	Protein DEK	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			67.301	56.614	2	0.036488	30580	160513_QHF_FH_JSI10Kac_4	37.556	16.686			0.72498	0.85785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72498	0.85785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3666700	1957500	1709200	0	0	0	3666700	1957500	1709200	0	0	0	0	0	0	31676	1444	29967	196234	265556	265556			1	
LLASFFDR	0	Unmodified	967.51272	0.51271674	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	67.051	66.234	2	0.048721	55458	160511_QHF_FH_JSI10i_3	37.558	10.956			1.0583	0.9486	15.015	4	0	Median	1.0677	0.87027	NaN	1	0	Median	0.67019	0.76789	NaN	1	0	Median	1.13	1.0533	NaN	1	0	Median	1.049	1.034	NaN	1	0	Median	294310000	149560000	144750000	87276000	44196000	43079000	59542000	38905000	20637000	104140000	44176000	59967000	43346000	22281000	21066000	31677	4217	29968	196235;196236;196237;196238	265557	265557			1	
LLASFPSAGEQGGEAGAAETGGSAGAGDPGK	1	Unmodified	2716.2576	0.25763085	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	57.829	57.229	3	2.492E-19	51591	160511_QHF_FH_JSI10i_1	93.384	86.585			0.9592	1.0963	31.28	5	2	Median	1.3232	1.0963	NaN	1	0	Median	1.1907	1.395	29.789	2	2	Median	0.85792	0.79633	NaN	1	0	Median	0.79798	0.81497	NaN	1	0	Median	278640000	141260000	137380000	57831000	27100000	30731000	97577000	46265000	51312000	68231000	34757000	33474000	55006000	33141000	21865000	31678	681	29969	196239;196240;196241;196242;196243	265558;265559;265560;265561;265562;265563;265564;265565;265566	265563			9	
LLASIAEDYRK	1	Unmodified	1277.698	0.69795133	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								1	3		41.339	40.956	2;3	0.00069314	36016	160511_QHF_FH_JSI11i_3	69.451	44.598			0.57206	0.59374	50.882	4	4	Median	NaN	NaN	NaN	0	0	Median	0.61277	0.71097	NaN	1	1	Median	0.47164	0.45198	62.248	3	3	Plateau	NaN	NaN	NaN	0	0	Median	424650000	255140000	169510000	0	0	0	28297000	19496000	8800900	396350000	235640000	160700000	0	0	0	31679	2591	29970	196244;196245;196246;196247	265567;265568;265569;265570	265569			4	
LLASINSTVR	0	Unmodified	1072.6241	0.6240581	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.67	2	4	3					2	4	3	5	4	3	44.207	39.92	2	0.00030208	35194	160511_QHF_FH_JSI11i_3	99.7	42.598			1.0133	1.1129	16.579	15	0	Median	1.397	1.1996	9.4982	3	0	Plateau	0.97975	1.1514	16.226	5	0	Median	1.0009	0.9594	17.128	4	0	Median	0.93648	1.0328	13.172	3	0	Median	2347100000	1109300000	1237900000	301280000	127020000	174250000	537820000	268110000	269710000	727020000	344350000	382670000	781030000	369800000	411230000	31680	2734	29971	196248;196249;196250;196251;196252;196253;196254;196255;196256;196257;196258;196259;196260;196261;196262	265571;265572;265573;265574;265575;265576;265577;265578;265579;265580;265581;265582;265583;265584;265585;265586;265587;265588	265571			18	
LLASLVK	1	Unmodified	742.49528	0.49527576	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	42.157	41.602	2	0.024235	35674	160511_QHF_FH_JSI11i_2	58.167	2.0455			1.9736	2.0399	25.477	3	3	Median	NaN	NaN	NaN	0	0	Median	1.62	1.9944	NaN	1	1	Median	1.9736	2.0399	NaN	1	1	Median	3.0375	3.1345	NaN	1	1	Median	1673300000	697430000	975910000	0	0	0	511450000	243310000	268140000	657130000	269440000	387690000	504770000	184690000	320080000	31681	2380	29972	196263;196264;196265	265589;265590;265591	265589			3	
LLASLYR	0	Unmodified	834.49634	0.49633839	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	42.748	41.635	2	0.017438	34884	160511_QHF_FH_JSI10i_3	61.494	14.692			0.76819	0.95545	9.5529	3	0	Plateau	1.1949	0.95545	NaN	1	0	Median	0.72787	0.81988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95999	0.97725	NaN	1	0	Median	344430000	174670000	169760000	95356000	42713000	52644000	130620000	75636000	54981000	0	0	0	118460000	56322000	62137000	31682	1895	29973	196266;196267;196268	265592	265592			1	
LLASMLAK	1	Unmodified	845.50446	0.50446024	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			48.878	47.268	2	0.011487	39478	160511_QHF_FH_JSI10i_3	53.754	11.862			1.2774	1.0551	NaN	1	0	Median	1.2774	1.0551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99233000	40927000	58306000	99233000	40927000	58306000	0	0	0	0	0	0	0	0	0	31683	2543	29974	196269;196270	265593;265594;265595	265593			3	
LLASMMCK	1	Unmodified	952.45442	0.45441528	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			7.4369	6.9161	3	0.054323	4838	160511_QHF_FH_JSI10i_3	24.155	5.4241			8.4099	9.3981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.4099	9.3981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30814000	5335700	25478000	0	0	0	30814000	5335700	25478000	0	0	0	0	0	0	31684	402	29975	196271	265596	265596			1	
LLASPSSR	0	Unmodified	829.46577	0.46576654	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				20.818	11.334	2	0.04762	8175	160513_QHF_FH_JSI9Kac_5	44.767	4.564			1.1432	0.92589	NaN	1	0	Median	1.1432	0.92589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5482600	2813300	2669300	5482600	2813300	2669300	0	0	0	0	0	0	0	0	0	31685	2594	29976	196272	265597	265597			1	
LLASQGSQGAPLLSTPK	1	Unmodified	1666.9254	0.92538508	2577	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.391	56.035	2	0.0077034	48040	160511_QHF_FH_JSI12i_2	54.7	37.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3687900	3687900	0	0	0	0	0	0	0	0	0	0	3687900	3687900	0	31686	2577	29977	196273	265598	265598			1	
LLASSDPLAQIAEDKPYAELWMGTHPR	1	Unmodified	3008.5066	0.50659209	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	100.84	100.79	4	1.9205E-41	89775	160511_QHF_FH_JSI11i_3	164.05	150.49			1.0803	0.85307	19.213	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0803	1.2293	NaN	1	1	Median	1.1349	1.0752	NaN	1	1	Median	0.838	0.84164	NaN	1	0	Median	504430000	217680000	286740000	0	0	0	109500000	22531000	86965000	202560000	76574000	125990000	192370000	118580000	73789000	31687	1418	29978	196274;196275;196276	265599;265600;265601	265599			2	
LLASSPALPSSGAQAR	0	Unmodified	1524.826	0.82600539	5140	Q9NYZ3	GTSE1	G2 and S phase-expressed protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.184	44.792	2	0.00033445	38319	160511_QHF_FH_JSI12i_2	83.397	46.872			0.63706	0.66575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63706	0.66575	NaN	1	1	Median	7031500	4463200	2568300	0	0	0	0	0	0	0	0	0	7031500	4463200	2568300	31688	5140	29979	196277;196278	265602;265603	265602			2	
LLASTLVHSVK	1	Unmodified	1166.7023	0.70230842	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	4	3	3	48.296	45.174	2;3	8.8997E-07	38287	160511_QHF_FH_JSI12i_3	111.63	94.959			1.0518	0.99076	18.797	11	2	Median	1.1771	0.95673	1.1987	3	0	Plateau	0.86848	0.99076	1.4994	3	1	Median	1.0861	1.0318	41.497	3	1	Median	1.0335	1.0315	2.8974	2	0	Median	1329700000	701530000	628180000	320580000	148870000	171710000	297690000	169710000	127980000	283660000	130310000	153350000	427780000	252640000	175140000	31689	5124	29980	196279;196280;196281;196282;196283;196284;196285;196286;196287;196288;196289;196290;196291	265604;265605;265606;265607;265608;265609;265610;265611;265612;265613;265614;265615;265616;265617;265618;265619;265620;265621	265617			18	
LLASTTPEEILEK	1	Unmodified	1442.7868	0.78682591	3767	Q8WUR7	C15orf40	UPF0235 protein C15orf40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.207	67.306	2	0.00019792	58804	160511_QHF_FH_JSI11i_2	80.763	52.365			0.673	0.66977	12.548	4	1	Median	0.80421	0.66898	NaN	1	0	Median	0.44879	0.54215	NaN	1	1	Median	0.67913	0.67057	NaN	1	0	Median	0.66692	0.72702	NaN	1	0	Median	127190000	80381000	46807000	35246000	20797000	14449000	20565000	17150000	3414500	33151000	18635000	14515000	38227000	23798000	14428000	31690	3767	29981	196292;196293;196294;196295	265622;265623;265624;265625	265624			4	
LLATATANGHGLK	1	Unmodified	1265.7092	0.70918471	5204	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.518	24.492	3	0.058269	20222	160511_QHF_FH_JSI12i_3	23.881	12.956			0.88523	0.87274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88523	0.87274	NaN	1	1	Median	45755000	23360000	22394000	0	0	0	0	0	0	0	0	0	45755000	23360000	22394000	31691	5204	29982	196296	265626	265626			1	
LLATEQEDAAVAK	1	Unmodified	1357.7089	0.70890994	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	2	2	1	36.016	33.732	2	6.5217E-22	29465	160511_QHF_FH_JSI9i_1	201.46	147.49			0.85684	0.88172	12.89	5	0	Median	1.0216	0.83226	NaN	1	0	Median	0.80082	0.94266	9.4513	2	0	Median	1.014	0.9828	NaN	1	0	Median	0.70198	0.73427	NaN	1	0	Median	1091700000	527460000	564210000	273110000	122220000	150890000	305670000	159340000	146340000	275120000	121900000	153220000	237770000	124000000	113760000	31692	5213	29983	196297;196298;196299;196300;196301;196302;196303	265627;265628;265629;265630;265631;265632;265633;265634;265635;265636;265637	265635			11	
LLATHFSAGVLQLLAASAPILQNIGQLGLLAR	0	Unmodified	3268.9024	0.90235222	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.47	96.748	3	1.0538E-29	57184	160513_QHF_FH_JSI10Kac_6	129.64	121.46			0.86638	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86638	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159050000	80986000	78065000	0	0	0	159050000	80986000	78065000	0	0	0	0	0	0	31693	405	29984	196304	265638;265639	265639			2	
LLAVAATAPPDAPNREEVFDER	0	Unmodified	2380.2023	0.20228822	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	3.85	1	4	4					1		2	2	4	2	66.456	64.649	3	2.123E-29	57754	160511_QHF_FH_JSI11i_3	181.14	153.05			1.078	1.0555	10.093	10	0	Median	1.3755	1.1487	14.426	2	0	Median	0.99259	1.1653	9.491	2	0	Median	1.078	1.0403	9.8782	4	0	Median	0.94104	1.0063	7.6853	2	0	Median	2619200000	1287600000	1331600000	472680000	191230000	281450000	795410000	436880000	358530000	963710000	469070000	494640000	387400000	190450000	196960000	31694	1139	29985	196305;196306;196307;196308;196309;196310;196311;196312;196313;196314	265640;265641;265642;265643;265644;265645;265646;265647;265648;265649;265650;265651;265652;265653;265654;265655;265656;265657;265658;265659;265660;265661	265641			22	
LLAVLQEILILPTIPISLVSFLVER	0	Unmodified	2788.7082	0.70817565	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.07	101.35	3	1.2848E-22	60004	160513_QHF_FH_JSI10Kac_6	129.78	123.99			1.0952	1.3042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0952	1.3042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77723000	44563000	33160000	0	0	0	77723000	44563000	33160000	0	0	0	0	0	0	31695	4337	29986	196315	265662;265663	265662			2	
LLAVTGEQAQQAR	0	Unmodified	1383.747	0.74702678	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	3	1	33.027	30.72	2	9.6355E-05	26126	160511_QHF_FH_JSI11i_2	94.66	49.499			0.97622	0.98923	24.879	6	1	Median	1.1755	1.0112	NaN	1	0	Median	0.65083	0.79953	NaN	1	0	Median	1.0782	1.0646	35.581	3	1	Median	0.88385	0.96775	NaN	1	0	Median	208730000	112100000	96631000	44672000	17502000	27169000	27384000	15495000	11889000	103340000	60153000	43191000	33334000	18953000	14381000	31696	2907	29987	196316;196317;196318;196319;196320;196321	265664;265665;265666;265667;265668;265669;265670;265671;265672	265670			8	
LLAYALDYWSK	1	Unmodified	1341.6969	0.69688869	4801	Q9H999;Q9BZ23	PANK3;PANK2	Pantothenate kinase 3;Pantothenate kinase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		84.215	75.248	2	9.2419E-06	41262	160513_QHF_FH_JSI9Kac_6	100.48	70.222			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31697	4801	29988	196322;196323	265673;265674	265674			2	
LLCEHFR	0	Unmodified	973.48037	0.48037075	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	23.636	23.134	2;3	0.0028015	19386	160511_QHF_FH_JSI11i_3	66.682	55.809			1.1837	1.1788	22.984	7	0	Median	1.6842	1.3518	NaN	1	0	Median	0.87322	1.0239	19.924	2	0	Median	1.1732	1.0945	0.94872	2	0	Median	1.5827	1.631	12.236	2	0	Median	1154900000	540470000	614430000	30963000	14518000	16445000	167800000	85129000	82676000	444250000	228060000	216190000	511880000	212750000	299120000	31698	2362	29989	196324;196325;196326;196327;196328;196329;196330	265675;265676;265677;265678;265679;265680	265675			6	
LLCGLLAER	0	Unmodified	1043.5798	0.57975045	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	4	4	59.87	56.868	2	1.8366E-09	50250	160511_QHF_FH_JSI11i_3	155	84.728			1.0016	1.0969	23.278	15	1	Median	1.3498	1.1211	13.979	3	1	Median	0.95936	1.0774	20.513	4	0	Median	0.8012	0.78459	9.5118	4	0	Median	1.2025	1.2774	5.9701	4	0	Median	36575000000	18098000000	18477000000	3927000000	1595600000	2331400000	8823700000	4257800000	4565900000	12426000000	6556500000	5870000000	11398000000	5688200000	5709700000	31699	1048	29990	196331;196332;196333;196334;196335;196336;196337;196338;196339;196340;196341;196342;196343;196344;196345	265681;265682;265683;265684;265685;265686;265687;265688;265689;265690;265691;265692;265693;265694;265695;265696;265697;265698;265699;265700;265701;265702;265703;265704;265705;265706;265707;265708;265709;265710	265683			30	
LLCHLTPSIYTEFPDETLR	0	Unmodified	2304.146	0.1460189	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		84.271	84.271	3	6.9324E-05	75277	160511_QHF_FH_JSI11i_3	81.317	66.704			0.84954	0.7622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84954	0.7622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48352000	30744000	17608000	0	0	0	0	0	0	48352000	30744000	17608000	0	0	0	31700	3028	29991	196346	265711	265711			1	
LLCINPPLFEIYQVLLSPTQHHVALIGIK	1	Unmodified	3325.8625	0.86246124	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.771	90.343	4	2.195E-60	51328	160513_QHF_FH_JSI11Kac_6	188.29	182.69			1.083	1.0415	15.349	4	1	Median	1.1622	0.97411	NaN	1	0	Median	0.94451	1.1135	NaN	1	1	Median	1.0093	0.96311	NaN	1	0	Median	1.2702	1.3389	NaN	1	0	Median	911070000	417280000	493790000	192210000	88029000	104180000	226890000	91910000	134980000	305790000	150080000	155720000	186170000	87264000	98910000	31701	4284	29992	196347;196348;196349;196350	265712;265713;265714;265715	265712			4	
LLCNFMR	0	Unmodified	952.46228	0.46227785	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	2	1	47.747	46.916	2	0.010708	40448	160511_QHF_FH_JSI11i_2	79.833	70.592			1.1423	1.1442	23.269	6	1	Median	1.4177	1.1743	7.5997	2	0	Median	1.0073	1.1763	NaN	1	0	Median	0.81576	0.80619	18.377	2	1	Median	1.2998	1.3243	NaN	1	0	Median	1557900000	668580000	889310000	324160000	124000000	200160000	306580000	124350000	182230000	511600000	252730000	258880000	415540000	167500000	248040000	31702	1264	29993	196351;196352;196353;196354;196355;196356	265716;265717;265718;265719	265718			4	
LLCSNSAFLR	0	Unmodified	1179.607	0.60702783	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	49.787	49.185	2	0.045777	43501	160511_QHF_FH_JSI11i_3	36.506	24.659			0.98029	1.1265	22.911	3	0	Median	NaN	NaN	NaN	0	0	Median	0.98029	1.1265	NaN	1	0	Median	0.80182	0.76059	NaN	1	0	Median	1.132	1.1355	NaN	1	0	Median	191830000	92916000	98912000	0	0	0	46260000	15604000	30657000	56782000	33529000	23253000	88785000	43784000	45002000	31703	2442	29994	196357;196358;196359	265720	265720			1	
LLDAPGIVPGPNSEVGTILR	0	Unmodified	2017.1208	0.12079042	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	93.128	92.525	2	0.00019598	81298	160511_QHF_FH_JSI11i_2	77.078	56.125			0.6821	0.53259	25.916	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84058	0.82206	40.824	2	2	Median	0.66535	0.73856	15.283	2	2	Median	38991000	21631000	17361000	0	0	0	0	0	0	21529000	12293000	9236200	17462000	9338000	8124400	31704	5041	29995	196360;196361;196362;196363	265721;265722;265723;265724;265725;265726	265724			6	
LLDAQLATGGIVDPR	0	Unmodified	1537.8464	0.84640648	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	71.151	70.265	2	0.00014422	60557	160511_QHF_FH_JSI12i_2	95.401	65.657			0.99312	0.98252	11.808	4	1	Median	1.0477	0.89693	NaN	1	0	Median	0.81768	0.96439	NaN	1	0	Median	1.1337	1.1851	NaN	1	1	Median	0.94136	1.001	NaN	1	0	Median	83412000	35541000	47871000	20564000	8468300	12095000	16908000	7972800	8935100	21857000	10892000	10965000	24083000	8208000	15875000	31705	2636	29996	196364;196365;196366;196367;196368	265727;265728;265729;265730;265731;265732;265733;265734;265735	265728			9	
LLDAVDTYIPVPAR	0	Unmodified	1541.8453	0.84534384	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.46	4	4	4				2	2		4	4	5	3	83.227	79.738	2;3	3.2087E-17	71143	160511_QHF_FH_JSI12i_2	210.87	173.39			0.86732	0.88553	21.917	14	8	Median	0.98419	0.80836	36.324	3	1	Median	0.74658	0.88553	19.341	4	3	Median	0.95778	0.96146	20.331	5	2	Median	0.75129	0.80364	19.838	2	2	Median	1523000000	869460000	653550000	157390000	86864000	70523000	271330000	154550000	116770000	336150000	179040000	157110000	758150000	449000000	309140000	31706	1658	29997	196369;196370;196371;196372;196373;196374;196375;196376;196377;196378;196379;196380;196381;196382;196383;196384	265736;265737;265738;265739;265740;265741;265742;265743;265744;265745;265746;265747;265748;265749;265750;265751;265752;265753	265739			18	
LLDAVDTYIPVPARDLEK	1	Unmodified	2027.0939	0.09390697	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.542	1	10	4							3	4	3	5	86.244	85.756	2;3	8.1132E-12	74056	160511_QHF_FH_JSI12i_2	182.08	160.85			1.0154	1.0112	28.23	15	8	Median	1.103	0.93535	45.931	3	2	Median	0.91513	1.0801	30.625	4	3	Median	1.1256	1.0891	5.2255	3	1	Median	0.97829	0.95614	19.284	5	2	Median	1762800000	815630000	947150000	233990000	86546000	147440000	321310000	163360000	157950000	493530000	238410000	255120000	713950000	327310000	386640000	31707	1658	29998	196385;196386;196387;196388;196389;196390;196391;196392;196393;196394;196395;196396;196397;196398;196399	265754;265755;265756;265757;265758;265759;265760;265761;265762;265763;265764;265765;265766;265767;265768;265769;265770;265771;265772;265773;265774;265775;265776;265777;265778;265779;265780;265781;265782	265760			29	
LLDDAMAADK	1	Unmodified	1061.5063	0.50631073	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	34.299	33.575	2	0.0023351	30364	160511_QHF_FH_JSI12i_1	68.893	43.97			0.80694	0.84415	40.347	3	0	Median	0.67123	0.55823	NaN	1	0	Median	1.0687	1.2509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80694	0.84415	NaN	1	0	Median	988140000	509970000	478180000	328020000	165880000	162150000	349850000	203710000	146140000	0	0	0	310270000	140380000	169890000	31708	4850	29999	196400;196401;196402	265783;265784	265783			2	
LLDDLFR	0	Unmodified	890.48617	0.48616764	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	66.799	65.9	2	0.037155	57528	160511_QHF_FH_JSI11i_2	48.787	14.934			0.89896	0.95203	1.2019	4	0	Median	1.0747	0.94835	NaN	1	0	Median	0.78126	0.95572	NaN	1	0	Median	0.96586	0.96469	NaN	1	0	Median	0.83669	0.9377	NaN	1	0	Median	154460000	77360000	77102000	28031000	12363000	15669000	44528000	24317000	20211000	52678000	27706000	24972000	29225000	12973000	16251000	31709	5380	30000	196403;196404;196405;196406	265785	265785			1	
LLDDLFRK	1	Unmodified	1018.5811	0.58113065	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	1	3	56.334	55.273	3	0.0009002	48658	160511_QHF_FH_JSI10i_2	70.919	29.89			1.0636	1.0043	44.365	8	3	Median	1.1423	0.94942	5.3398	2	0	Median	0.97539	1.148	36.703	2	1	Median	1.0456	1.0234	NaN	1	0	Median	1.0007	1.0229	72.265	3	2	Median	543460000	273540000	269920000	59929000	29202000	30727000	90112000	44158000	45954000	49700000	25598000	24102000	343720000	174580000	169140000	31710	5380	30001	196407;196408;196409;196410;196411;196412;196413;196414;196415	265786;265787;265788;265789;265790;265791;265792;265793;265794;265795;265796;265797	265796			12	
LLDEAIQAVK	1	Unmodified	1098.6285	0.62847478	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.34	5	6	1				1			3	4	4	2	51.932	50.307	2	2.9864E-06	43499	160511_QHF_FH_JSI11i_2	164.96	82.503			1.8721	1.6465	80.506	13	11	Median	3.3686	2.824	31.511	3	3	Plateau	0.88463	1.0822	110.56	4	4	Median	1.1371	1.1108	71.226	4	3	Median	1.8897	2.0725	84.057	2	1	Median	4148300000	1923600000	2224700000	588920000	202570000	386350000	1402900000	754480000	648440000	1434200000	683540000	750640000	722270000	283010000	439260000	31711	4212	30002	196416;196417;196418;196419;196420;196421;196422;196423;196424;196425;196426;196427;196428	265798;265799;265800;265801;265802;265803;265804;265805;265806;265807;265808;265809;265810	265808			13	
LLDEDEIR	0	Unmodified	1001.5029	0.50293991	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		35.206	34.596	2	0.0055661	30392	160511_QHF_FH_JSI9i_1	65.246	29.366			0.85282	0.64634	25.593	3	2	Plateau	0.75231	0.62328	NaN	1	0	Median	0.85282	0.98615	NaN	1	1	Median	0.96961	0.95422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	606100000	352600000	253500000	167070000	96662000	70412000	201220000	122950000	78263000	237810000	132980000	104830000	0	0	0	31712	366	30003	196429;196430;196431	265811;265812;265813;265814	265813			4	
LLDEDEIRGYK	1	Unmodified	1349.6827	0.68269519	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1		By matching		By MS/MS	2	0		2									1		1	42.113	40.942	3	0.0011346	35016	160511_QHF_FH_JSI12i_2	46.706	38.193			1.0837	1.2376	6.1839	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99303	1.1846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1827	1.2929	NaN	1	0	Median	106400000	52165000	54234000	0	0	0	50496000	23291000	27204000	0	0	0	55904000	28874000	27030000	31713	366	30004	196432;196433	265815;265816	265815			2	
LLDEEEATDNDLR	0	Unmodified	1531.7002	0.70019575	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.159	40.52	2	8.4174E-41	35905	160511_QHF_FH_JSI9i_1	201.46	191.45			1.0976	1.0498	7.0576	4	0	Median	1.2989	1.0403	NaN	1	0	Median	0.8609	1.0212	NaN	1	0	Median	1.0713	1.0594	NaN	1	0	Median	1.1245	1.194	NaN	1	0	Median	1500900000	796900000	704000000	244240000	106690000	137550000	411750000	237170000	174580000	417820000	230900000	186920000	427090000	222140000	204950000	31714	3766	30005	196434;196435;196436;196437	265817;265818;265819;265820;265821;265822;265823;265824;265825	265825			9	
LLDELSPNTAPHK	1	Unmodified	1433.7514	0.75144346	1217	P22830	FECH	Ferrochelatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	39.498	38.292	3	4.946E-05	32656	160511_QHF_FH_JSI12i_2	74.46	65.266			1.4157	1.389	33.684	2	1	Median	2.0558	1.7625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97492	1.0946	NaN	1	0	Median	103220000	44911000	58307000	38861000	15119000	23742000	0	0	0	0	0	0	64357000	29792000	34565000	31715	1217	30006	196438;196439	265826;265827	265826			2	
LLDEQEQEDEEASTGSHLK	1	Unmodified	2156.971	0.97095088	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	33.85	33.32	3	3.4544E-11	29855	160511_QHF_FH_JSI11i_1	130.09	122.82			1.1608	1.1869	52.368	5	2	Median	1.4048	1.1655	NaN	1	0	Median	0.98234	1.1869	NaN	1	0	Median	1.2343	1.1729	104.68	2	2	Median	1.1608	1.2162	NaN	1	0	Median	284910000	144730000	140170000	45697000	20120000	25577000	81311000	52761000	28550000	112110000	47179000	64935000	45784000	24673000	21111000	31716	4829	30007	196440;196441;196442;196443;196444	265828;265829;265830;265831;265832;265833;265834	265829			7	
LLDEVFFSEK	1	Unmodified	1225.6231	0.62305505	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.5	3	4	5				1	3		2	4	4	6	75.909	72.597	2	5.5011E-12	63766	160511_QHF_FH_JSI12i_2	154.56	111.31			0.97873	1.0193	18.288	15	3	Median	1.0777	0.89287	18.731	2	1	Median	1.0178	1.0087	17.581	4	0	Linear	1.083	1.0498	7.8482	4	1	Median	0.95052	0.98942	25.634	5	1	Median	3515900000	1709500000	1806400000	608670000	275170000	333500000	859950000	429780000	430180000	1180800000	601490000	579270000	866540000	403090000	463450000	31717	1267	30008	196445;196446;196447;196448;196449;196450;196451;196452;196453;196454;196455;196456;196457;196458;196459;196460	265835;265836;265837;265838;265839;265840;265841;265842;265843;265844;265845;265846;265847;265848;265849;265850;265851;265852;265853;265854;265855;265856	265839			22	
LLDEWFTLDEVPK	1	Unmodified	1603.8134	0.81337501	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.04	99.862	2	9.8426E-05	87563	160511_QHF_FH_JSI11i_2	112.15	95.122			0.90838	0.95939	48.85	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64972	0.67917	NaN	1	1	Median	1.27	1.3552	NaN	1	0	Median	38117000	17290000	20826000	0	0	0	0	0	0	21844000	11092000	10752000	16273000	6198300	10075000	31718	6	30009	196461;196462	265857;265858	265858			2	
LLDFGSLSNLQVTQPTVGMNFK	1	Oxidation (M)	2424.2359	0.23589654	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	3.92	3	4	4						1	1	2	4	5	100.06	99.211	2;3	0	87515	160511_QHF_FH_JSI12i_3	399.57	355.58			0.95871	0.98827	15.999	12	0	Median	0.92471	0.79406	NaN	1	0	Median	0.75251	0.91546	16.941	2	0	Median	0.99215	0.91983	13.601	4	0	Median	1.034	1.0913	13.618	5	0	Median	3981100000	1934900000	2046200000	295670000	151570000	144100000	445050000	266320000	178730000	1195900000	591670000	604230000	2044500000	925390000	1119100000	31719	914	30010	196463;196464;196465;196466;196467;196468;196469;196470;196471;196472;196473;196474	265859;265860;265861;265862;265863;265864;265865;265866;265867;265868;265869;265870;265871;265872;265873;265874;265875;265876	265875		492	17	
LLDFGSLSNLQVTQPTVGMNFK	1	Unmodified	2408.241	0.24098191	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.58	3	8	5						4	3	5	6	6	99.853	98.119	2;3	0	90506	160511_QHF_FH_JSI11i_3	501.53	433.25			0.97064	1.008	17.344	20	2	Median	1.2207	1.0287	21.351	3	0	Plateau	0.73375	0.87612	17.104	5	1	Median	0.97064	0.92232	13.47	6	1	Median	1.1757	1.2287	12.226	6	0	Median	25518000000	13219000000	12299000000	3859800000	1753800000	2106100000	4599100000	2655600000	1943500000	8584000000	4638900000	3945000000	8474800000	4170800000	4304000000	31720	914	30010	196475;196476;196477;196478;196479;196480;196481;196482;196483;196484;196485;196486;196487;196488;196489;196490;196491;196492;196493;196494	265877;265878;265879;265880;265881;265882;265883;265884;265885;265886;265887;265888;265889;265890;265891;265892;265893;265894;265895;265896;265897;265898;265899;265900;265901;265902;265903;265904;265905;265906;265907	265878			31	
LLDFSYEQYQK	1	Unmodified	1432.6874	0.68744622	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.337	63.434	2	2.0466E-09	54475	160511_QHF_FH_JSI12i_2	131.52	110.14			1.0179	1.08	11.187	4	0	Median	1.1066	0.93235	NaN	1	0	Median	0.95207	1.1819	NaN	1	0	Median	1.0104	1.0113	NaN	1	0	Median	1.0254	1.1533	NaN	1	0	Median	318330000	143790000	174540000	70147000	29599000	40548000	68804000	31977000	36827000	88357000	45202000	43155000	91025000	37013000	54012000	31721	3951	30011	196495;196496;196497;196498	265908;265909;265910;265911;265912;265913;265914;265915	265908			8	
LLDFTQAQILQGLRK	1	Unmodified	1743.0043	0.004304102	12	A2RRP1	NBAS	Neuroblastoma-amplified sequence	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		86.209	86.209	3	0.0010711	76949	160511_QHF_FH_JSI11i_3	56.482	47.066			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31722	12	30012	196499	265916	265916			1	
LLDGEAALPAVVFLHGLFGSK	1	Unmodified	2153.1885	0.18847606	3662	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	100.44	95.608	3	1.4214E-28	54152	160513_QHF_FH_JSI10Kac_6	150.83	126.82			0.99239	0.953	17.644	7	1	Median	0.99239	0.84879	NaN	1	0	Median	0.60908	0.70727	12.846	2	0	Median	1.0306	0.95481	0.26788	2	0	Median	1.0072	1.0437	4.5953	2	1	Median	785540000	425050000	360490000	119960000	64698000	55267000	154220000	97150000	57071000	194930000	104990000	89938000	316430000	158210000	158220000	31723	3662	30013	196500;196501;196502;196503;196504;196505;196506	265917;265918;265919;265920;265921;265922;265923;265924;265925;265926;265927;265928;265929	265929			13	
LLDGFFIRPFYK	1	Unmodified	1514.8286	0.82857157	4199;1597	Q96PU5;P46934	NEDD4L;NEDD4	E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	90.866	87.104	3	1.0507E-05	44453	160513_QHF_FH_JSI10Kac_6	97.214	67.915			0.87108	0.89364	10.263	7	0	Median	1.2399	1.0225	NaN	1	0	Median	0.71221	0.83109	10.411	2	0	Median	0.92522	0.87223	3.4292	2	0	Median	0.79828	0.85339	14.261	2	0	Median	580250000	320490000	259760000	32169000	16810000	15359000	206670000	115640000	91025000	194260000	106510000	87748000	147150000	81527000	65623000	31724	4199;1597	30014	196507;196508;196509;196510;196511;196512;196513;196514	265930;265931;265932;265933;265934;265935;265936;265937;265938;265939;265940;265941;265942;265943;265944;265945;265946;265947;265948	265948			19	
LLDGLAQAQAEGR	0	Unmodified	1340.7048	0.70482762	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		43.808	43.325	2	0.0099208	37242	160511_QHF_FH_JSI11i_2	48.741	30.877			0.87915	0.9023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87915	0.9023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34634000	14592000	20042000	0	0	0	0	0	0	34634000	14592000	20042000	0	0	0	31725	2180	30015	196515	265949;265950	265950			2	
LLDGPSTEK	1	Unmodified	958.49713	0.49712625	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	18.914	18.348	2	0.0031278	15556	160511_QHF_FH_JSI11i_1	61.679	29.324			0.93765	0.89548	16.217	7	0	Median	1.095	0.92208	4.1389	2	0	Median	0.71789	0.86988	3.5244	2	0	Median	0.78621	0.76922	22.487	2	0	Median	1.0732	1.133	NaN	1	0	Median	2021700000	1047300000	974400000	386260000	220930000	165330000	568280000	338660000	229620000	628720000	301950000	326770000	438470000	185790000	252680000	31726	1220	30016	196516;196517;196518;196519;196520;196521;196522	265951;265952;265953;265954;265955;265956;265957	265951			6	
LLDHLQLDK	1	Unmodified	1093.6132	0.61315906	5151	Q9NZD8	SPG21	Maspardin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			42.636	41.67	3	0.00040485	36676	160511_QHF_FH_JSI10i_2	76.228	49.555			2.8219	3.4433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8219	3.4433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37998000	11137000	26861000	0	0	0	37998000	11137000	26861000	0	0	0	0	0	0	31727	5151	30017	196523	265958	265958			1	
LLDHMQNTPGFMYK	1	Unmodified	1693.7956	0.79563323	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							4	2	5	5	56.985	56.253	2;3	3.3458E-23	48152	160511_QHF_FH_JSI12i_3	146.16	100.8			0.8837	0.84294	65.529	6	5	Median	0.84936	0.72321	NaN	1	1	Median	0.61805	0.74101	NaN	1	1	Median	1.8422	1.7081	118.74	2	2	Median	0.99206	1.0232	9.1849	2	1	Median	704000000	339080000	364920000	104000000	51263000	52736000	151570000	87585000	63987000	189150000	93640000	95506000	259280000	106590000	152690000	31728	5042	30018	196524;196525;196526;196527;196528;196529;196530;196531;196532;196533;196534;196535;196536;196537;196538;196539	265959;265960;265961;265962;265963;265964;265965;265966;265967;265968;265969;265970;265971;265972;265973;265974;265975	265974			17	
LLDHMQNTPGFMYK	1	Oxidation (M)	1709.7905	0.79054786	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	45.821	45.579	3	0.018517	38891	160511_QHF_FH_JSI12i_3	42.426	37.957			1.2774	1.3327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2774	1.3327	NaN	1	0	Median	59314000	25483000	33830000	0	0	0	0	0	0	0	0	0	59314000	25483000	33830000	31729	5042	30018	196540	265976	265976		2575	0	
LLDIACWIHHK	1	Unmodified	1404.7336	0.73362533	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	70.51	70.074	3;4	7.0227E-06	60374	160511_QHF_FH_JSI12i_3	95.573	91.007			0.94733	0.98782	12.853	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94283	1.07	NaN	1	0	Median	0.91313	0.87135	6.4392	2	0	Median	1.0608	1.0861	NaN	1	0	Median	134090000	61029000	73058000	0	0	0	11917000	5532000	6384600	55336000	24245000	31090000	66835000	31252000	35583000	31730	869	30019	196541;196542;196543;196544;196545	265977;265978;265979;265980;265981;265982;265983	265983			7	
LLDIEGLYSK	1	Unmodified	1149.6281	0.62814043	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	73.255	72.89	2	0.0025124	65983	160511_QHF_FH_JSI10i_1	59.426	30.339			0.88491	1.059	24.081	3	2	Median	NaN	NaN	NaN	0	0	Median	0.88491	1.059	NaN	1	0	Median	1.3377	1.275	NaN	1	1	Median	0.73873	0.7908	NaN	1	1	Median	121870000	58404000	63462000	0	0	0	54524000	24791000	29733000	30075000	13560000	16515000	37266000	20052000	17214000	31731	3862	30020	196546;196547;196548	265984;265985;265986;265987	265986			4	
LLDILHK	1	Unmodified	850.52764	0.52763852	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	45.38	44.972	3	0.0061575	37930	160511_QHF_FH_JSI10i_3	55.676	15.573			2.1165	2.1934	105.54	5	5	Median	NaN	NaN	NaN	0	0	Median	2.3156	2.8209	NaN	1	1	Median	1.0223	0.97276	140.48	2	2	Median	0.9044	0.91715	123.31	2	2	Median	103940000	49233000	54708000	0	0	0	6636000	896390	5739700	42873000	21546000	21328000	54431000	26791000	27641000	31732	135	30021	196549;196550;196551;196552;196553;196554;196555	265988;265989;265990;265991;265992;265993;265994	265990			7	
LLDISASSTEQIL	0	Unmodified	1388.7399	0.73987572	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	91.246	90.956	2	0.00045143	82742	160511_QHF_FH_JSI12i_1	92.062	77.396			0.76233	0.8575	7.9892	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73571	0.8384	NaN	1	1	Median	0.76233	0.73934	NaN	1	1	Median	0.85141	0.8575	NaN	1	1	Median	76420000	38547000	37873000	0	0	0	29742000	17470000	12272000	18347000	8519000	9827800	28331000	12558000	15773000	31733	346	30022	196556;196557;196558	265995;265996;265997	265996			3	
LLDIVAR	0	Unmodified	798.49634	0.49633839	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.36	2	4	1				1	2	1	1	3	3	4	49.334	45.073	2	0.010534	38722	160511_QHF_FH_JSI12i_2	74.415	13.293			1.0196	1.0327	11.937	11	0	Median	1.0527	0.89952	NaN	1	0	Median	0.78906	0.93529	8.459	3	0	Median	1.0077	1.0327	8.4846	3	0	Plateau	1.0578	1.1543	8.3319	4	0	Median	2771900000	1370600000	1401200000	450030000	186680000	263350000	680270000	366770000	313500000	864780000	420180000	444600000	776780000	396990000	379790000	31734	2328	30023	196559;196560;196561;196562;196563;196564;196565;196566;196567;196568;196569	265998;265999;266000;266001	265998			4	
LLDIVARSLYSEK	1	Unmodified	1505.8453	0.84534384	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.837	47.837	3	0.038649	42334	160511_QHF_FH_JSI11i_3	34.685	10.613			1.4622	1.3893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4622	1.3893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1416600000	667640000	748970000	0	0	0	0	0	0	1416600000	667640000	748970000	0	0	0	31735	2328	30024	196570	266002	266002			1	
LLDLDALRK	1	Unmodified	1055.6339	0.63389451	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	57.426	56.731	3	5.1863E-06	50205	160511_QHF_FH_JSI11i_3	92.838	58.451			0.90103	0.92144	19.555	6	1	Median	1.0994	0.96145	NaN	1	0	Median	0.87884	1.0506	11.324	2	1	Median	0.7733	0.74686	23.695	2	0	Median	0.86439	0.88111	NaN	1	0	Median	544390000	313840000	230560000	33484000	18009000	15475000	116510000	69134000	47375000	151330000	77342000	73988000	243070000	149350000	93720000	31736	1360	30025	196571;196572;196573;196574;196575;196576	266003;266004;266005;266006;266007;266008;266009	266004			7	
LLDLHQSWK	1	Unmodified	1138.6135	0.61349341	1802	P53609	PGGT1B	Geranylgeranyl transferase type-1 subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.116	48.718	3	0.0064756	41703	160511_QHF_FH_JSI12i_2	43.651	36.763			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31737	1802	30026	196577	266010	266010			1	
LLDLSVFR	0	Unmodified	961.55967	0.55966693	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	81.017	80.235	2	0.00098765	69356	160511_QHF_FH_JSI12i_2	95.541	54.595			0.88497	0.9606	14.699	6	0	Median	1.2551	1.0646	NaN	1	0	Median	0.80189	0.95492	6.3431	2	0	Median	0.91618	0.92393	NaN	1	0	Median	0.85501	0.9735	30.419	2	0	Median	522170000	267500000	254660000	66956000	29502000	37454000	119160000	67896000	51264000	142490000	67557000	74936000	193560000	102550000	91010000	31738	289	30027	196578;196579;196580;196581;196582;196583	266011;266012;266013;266014;266015;266016;266017	266011			7	
LLDLVQQSCNYK	1	Unmodified	1479.7392	0.73916421	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	3.69	3	8						1		2	3	4	3	56.583	55.764	2	6.2179E-23	50629	160511_QHF_FH_JSI11i_1	177.78	135.9			1.0857	0.92299	55.561	11	10	Median	0.70024	0.59125	62.985	2	2	Median	0.56088	0.68098	44.923	3	3	Plateau	0.69363	0.67807	67.742	3	2	Plateau	1.4947	1.6464	53.909	3	3	Median	677020000	368580000	308440000	54905000	28072000	26833000	149480000	83080000	66399000	307540000	179350000	128200000	165090000	78077000	87017000	31739	1861	30028	196584;196585;196586;196587;196588;196589;196590;196591;196592;196593;196594;196595	266018;266019;266020;266021;266022;266023;266024;266025;266026;266027;266028;266029;266030;266031	266018			14	
LLDLVQQSCNYKQLR	1	Acetyl (K)	1918.9935	0.99348142	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.789	68.179	3	0.03653	36230	160513_QHF_FH_JSI11Kac_5	37.555	33.894			0.65634	0.64361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65634	0.64361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1984900	1512100	472860	0	0	0	0	0	0	1984900	1512100	472860	0	0	0	31740	1861	30029	196596	266032	266032			1	
LLDLYESVDK	1	Unmodified	1193.618	0.61796967	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.938	61.631	2	0.044573	52940	160511_QHF_FH_JSI12i_2	44.318	24.531			0.35891	0.3958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35891	0.3958	NaN	1	1	Median	12070000	7978200	4092200	0	0	0	0	0	0	0	0	0	12070000	7978200	4092200	31741	3117	30030	196597	266033	266033			1	
LLDMDGIIVEK	1	Unmodified	1244.6686	0.66862503	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	3	2	77.483	76.893	2	3.4288E-07	70007	160511_QHF_FH_JSI12i_1	119.16	78.168			0.95222	0.95824	75.765	11	8	Median	1.021	0.86776	12.102	3	3	Median	0.79446	0.99542	115.42	3	2	Median	0.95222	0.95824	108.61	3	2	Median	0.93488	1.0161	14.431	2	1	Median	1650300000	944310000	705940000	348240000	192300000	155950000	526360000	299580000	226770000	444820000	264860000	179960000	330830000	187580000	143260000	31742	2502	30031	196598;196599;196600;196601;196602;196603;196604;196605;196606;196607;196608	266034;266035;266036;266037;266038;266039;266040;266041;266042;266043	266037			10	
LLDMGETDLMLAALR	0	Unmodified	1660.8528	0.85281376	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.67	101.49	2	0.055355	87416	160511_QHF_FH_JSI12i_2	43.672	21.474			0.56128	0.63048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56128	0.63048	NaN	1	1	Median	130310000	93449000	36857000	0	0	0	0	0	0	0	0	0	130310000	93449000	36857000	31743	4704	30032	196609	266044	266044			1	
LLDMVGK	1	Unmodified	774.43096	0.43096094	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			38.99	38.025	2	0.040857	33357	160511_QHF_FH_JSI10i_2	49.358	32.804			0.25038	0.30946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25038	0.30946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182900000	125620000	57280000	0	0	0	182900000	125620000	57280000	0	0	0	0	0	0	31744	2660	30033	196610	266045	266045			1	
LLDNLLALIR	0	Unmodified	1152.723	0.72304386	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	101.62	101.56	2	1.7989E-09	88300	160511_QHF_FH_JSI12i_3	155.42	88.386			1.0367	1.0753	28.748	5	0	Median	1.0367	0.88443	NaN	1	0	Median	0.86268	1.0753	NaN	1	0	Median	1.1841	1.1289	NaN	1	0	Median	1.2135	1.2864	48.448	2	0	Median	1076900000	492280000	584660000	113100000	59598000	53501000	173920000	88057000	85864000	293430000	129950000	163480000	496490000	214680000	281810000	31745	4831	30034	196611;196612;196613;196614;196615	266046;266047;266048;266049;266050	266049			5	
LLDNWDTLASTLSK	1	Unmodified	1575.8144	0.81443765	58	CON__P15497			yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	91.51	91.069	2;3	9.0923E-05	80780	160511_QHF_FH_JSI10i_2	71.344	65.181		+	1.262	1.4399	141.14	2	1	Median	NaN	NaN	NaN	0	0	Median	0.45402	0.53077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.5078	3.9063	NaN	1	0	Median	75404000	36811000	38592000	0	0	0	47662000	29759000	17903000	0	0	0	27742000	7052600	20689000	31746	58	30035	196616;196617;196618	266051;266052;266053	266053			3	
LLDPEDISVDHPDEK	1	Unmodified	1720.8156	0.81555986	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		53.95	53.286	3	0.00037193	48093	160511_QHF_FH_JSI10i_1	50.787	39.517			0.63881	0.83967	23.156	3	0	Plateau	0.63881	0.53344	NaN	1	0	Median	0.62557	0.72542	NaN	1	0	Median	0.86195	0.83967	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	358990000	195420000	163570000	86321000	50517000	35804000	102700000	54819000	47881000	169960000	90080000	79884000	0	0	0	31747	2162	30036	196619;196620;196621	266054;266055	266055			2	
LLDPEDVDVPQPDEK	1	Unmodified	1707.8203	0.82031089	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.652	62.017	2;3	9.8832E-10	56529	160511_QHF_FH_JSI12i_1	146.07	120.63			0.98915	0.9071	24.669	8	0	Median	0.86149	0.70075	16.059	2	0	Median	0.70228	0.84791	3.4783	2	0	Median	1.0105	0.9528	0.88662	2	0	Median	1.251	1.2832	11.652	2	0	Median	512580000	235980000	276600000	103870000	49622000	54252000	147330000	64712000	82620000	134280000	68172000	66111000	127090000	53471000	73621000	31748	2636	30037	196622;196623;196624;196625;196626;196627;196628;196629	266056;266057;266058;266059;266060;266061;266062;266063;266064;266065;266066;266067;266068;266069	266061			13	
LLDPFPDHVVFK	1	Unmodified	1425.7656	0.76563696	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.455	80.835	3	0.0066124	71095	160511_QHF_FH_JSI11i_2	40.516	37.194			1.0455	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0455	1.0608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19533000	7358000	12175000	0	0	0	0	0	0	19533000	7358000	12175000	0	0	0	31749	2386	30038	196630;196631	266070;266071	266071			2	
LLDPIREK	1	Unmodified	982.58113	0.58113065	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							3	3	4	4	29.997	29.27	2;3	0.0014148	24155	160511_QHF_FH_JSI12i_3	76.679	33.596			0.94186	0.98897	25.673	14	0	Median	1.3071	1.1126	7.7206	3	0	Median	1.0135	1.1406	9.9638	3	0	Plateau	1.5871	1.4883	46.565	4	0	Linear	0.88945	0.95542	7.2444	4	0	Median	4023000000	1925300000	2097700000	463570000	188590000	274970000	753550000	373270000	380280000	1335300000	601730000	733570000	1470600000	761760000	708880000	31750	1823	30039	196632;196633;196634;196635;196636;196637;196638;196639;196640;196641;196642;196643;196644;196645	266072;266073;266074;266075;266076;266077;266078;266079;266080;266081;266082;266083;266084;266085;266086	266086			15	
LLDPQTNTEIANYPIYK	1	Unmodified	1992.0204	0.020407676	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.183	71.565	2	5.4186E-11	65172	160511_QHF_FH_JSI11i_1	150.21	122.01			0.71179	0.67275	40.16	3	2	Plateau	0.85198	0.68554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70433	0.67275	NaN	1	0	Median	1.3701	1.3613	NaN	1	1	Median	63029000	23588000	39441000	26461000	8947500	17513000	0	0	0	20642000	9456100	11186000	15926000	5184900	10741000	31751	5599	30040	196646;196647;196648;196649	266087;266088;266089;266090	266087			4	
LLDQGALLMGK	1	Unmodified	1157.6478	0.64783001	4639	Q9H0R6	QRSL1	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.237	29.183	2	0.0089806	24529	160511_QHF_FH_JSI12i_3	49.418	6.1716			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31752	4639	30041	196650	266091	266091			1	
LLDRNQDETEDTELQGMNEYLSSFK	1	Unmodified	2974.3502	0.3502106	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		87.727	87.463	3	5.562E-29	78000	160511_QHF_FH_JSI11i_3	156.89	141.42			0.87891	0.92223	40.179	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5679	0.69414	NaN	1	0	Median	1.3602	1.2253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90656000	57007000	33649000	0	0	0	38267000	24850000	13418000	52388000	32157000	20231000	0	0	0	31753	2578	30042	196651;196652	266092;266093;266094;266095	266093			4	
LLDSEIK	1	Unmodified	816.45928	0.45928418	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	27.45	26.912	2	0.022384	23796	160511_QHF_FH_JSI10i_1	56.091	13.862			1.0077	1.0467	9.8179	5	0	Median	1.2873	1.0467	NaN	1	0	Median	0.71228	0.84295	NaN	1	0	Median	1.0085	1.0019	6.3737	2	0	Median	1.0077	1.0645	NaN	1	0	Median	1404500000	762520000	641990000	293120000	116910000	176210000	406470000	241400000	165070000	492910000	294160000	198740000	212020000	110050000	101970000	31754	1131	30043	196653;196654;196655;196656;196657	266096;266097;266098	266097			3	
LLDSITVPVAR	0	Unmodified	1182.6972	0.69722304	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			1	2	3	3	66.079	64.095	2	5.5671E-08	55891	160511_QHF_FH_JSI11i_2	126.07	83.041			1.1403	1.1396	20.613	8	2	Linear	1.5262	1.3084	NaN	1	0	Median	0.83651	1.0125	10.442	2	1	Median	1.0891	1.0804	27.425	3	1	Plateau	0.83991	0.91773	10.475	2	0	Median	781530000	374520000	407010000	136980000	55034000	81943000	210150000	110340000	99805000	256980000	115490000	141500000	177420000	93657000	83766000	31755	107	30044	196658;196659;196660;196661;196662;196663;196664;196665;196666	266099;266100;266101;266102;266103;266104;266105;266106;266107;266108	266106			10	
LLDSLEPPGEPGPSTNIPENDTVDGREEK	1	Unmodified	3104.4786	0.47858224	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								2	4	2	1	65.679	65.039	3;4	6.4168E-60	59304	160511_QHF_FH_JSI12i_1	202.03	195.59			1.1675	1.1688	12.06	8	3	Median	1.5042	1.231	19.592	2	2	Median	0.97599	1.1554	11.956	3	1	Median	1.3045	1.2593	12.349	2	0	Median	1.1376	1.1823	NaN	1	0	Median	2258500000	1019900000	1238600000	455520000	129690000	325830000	604770000	301710000	303060000	715340000	335680000	379660000	482870000	252860000	230020000	31756	3876	30045	196667;196668;196669;196670;196671;196672;196673;196674;196675	266109;266110;266111;266112;266113;266114;266115;266116;266117;266118;266119;266120;266121;266122;266123;266124;266125;266126;266127;266128;266129;266130;266131;266132;266133;266134;266135;266136	266119			28	
LLDSQSDQTSK	1	Unmodified	1220.5885	0.58846046	5476	Q9UQ84	EXO1	Exonuclease 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.855	11.538	2	0.015488	9270	160511_QHF_FH_JSI10i_1	50.978	27.549			0.75983	0.83638	27.939	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86423	1.0191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66804	0.68644	NaN	1	1	Median	46116000	26370000	19746000	0	0	0	15047000	8534900	6512200	0	0	0	31069000	17835000	13234000	31757	5476	30046	196676;196677	266137;266138	266138			2	
LLDSSTVTHLFK	1	Unmodified	1359.7398	0.73981614	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.68		8	8					1	4	7	4	5	5	71.012	68.15	2;3	2.1429E-11	59397	160511_QHF_FH_JSI12i_2	123.95	110.14			1.1295	1.0664	31.924	21	3	Median	1.3403	1.0691	32.206	7	1	Median	0.87991	1.0524	15.26	4	0	Median	0.85642	0.86965	19.456	5	1	Median	1.3439	1.355	46.321	5	1	Median	7902800000	3846000000	4056800000	1540000000	653050000	886920000	1448300000	846940000	601400000	2955700000	1421700000	1534000000	1958800000	924240000	1034500000	31758	1922	30047	196678;196679;196680;196681;196682;196683;196684;196685;196686;196687;196688;196689;196690;196691;196692;196693;196694;196695;196696;196697;196698	266139;266140;266141;266142;266143;266144;266145;266146;266147;266148;266149;266150;266151;266152;266153;266154;266155;266156;266157;266158;266159;266160;266161;266162;266163;266164;266165;266166;266167;266168;266169;266170;266171;266172;266173;266174;266175;266176;266177;266178;266179;266180;266181;266182	266145			43	
LLDSVEQDFHLEIAK	1	Unmodified	1755.9043	0.90431529	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		79.487	78.822	3	0.00027389	69178	160511_QHF_FH_JSI11i_2	63.682	52.162			1.0208	0.9418	9.7927	2	0	Median	1.1624	1.0093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89644	0.87879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56623000	26599000	30024000	14953000	5298400	9655000	0	0	0	41670000	21301000	20369000	0	0	0	31759	3053	30048	196699;196700	266183;266184	266183			2	
LLDSVPPTAISHFK	1	Unmodified	1523.8348	0.83477916	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		6	10							5	2	4	5	61.567	60.873	3	4.2839E-08	54386	160511_QHF_FH_JSI11i_3	96.734	91.231			1.0262	1.0347	31.236	10	5	Median	1.005	0.85718	15.104	2	2	Median	0.60427	0.70537	45.181	2	1	Median	1.1437	1.1222	17.302	2	0	Median	1.168	1.1664	19.432	4	2	Median	1865200000	905300000	959860000	327950000	141940000	186020000	270530000	156510000	114020000	651190000	317110000	334080000	615490000	289750000	325740000	31760	4940	30049	196701;196702;196703;196704;196705;196706;196707;196708;196709;196710;196711;196712;196713;196714;196715;196716	266185;266186;266187;266188;266189;266190;266191;266192;266193;266194;266195;266196;266197;266198;266199;266200;266201;266202;266203;266204;266205;266206;266207;266208;266209;266210;266211	266188			27	
LLDSWFTSTQEK	1	Unmodified	1453.7089	0.70890994	3548	Q8N5M9	JAGN1	Protein jagunal homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.15		4	2					2	1	2	1	4	2	71.649	67.391	2	1.551E-31	59519	160511_QHF_FH_JSI11i_2	192.1	150.65			1.0187	1.0276	10.259	7	0	Median	1.3106	1.1078	10.63	2	0	Median	0.88739	1.0969	NaN	1	0	Median	1.0187	1.0202	15.252	3	0	Median	0.8874	1.0172	NaN	1	0	Median	1101200000	543350000	557860000	152260000	69238000	83024000	209100000	101440000	107660000	428460000	214240000	214220000	311390000	158440000	152950000	31761	3548	30050	196717;196718;196719;196720;196721;196722;196723;196724;196725	266212;266213;266214;266215;266216;266217;266218;266219;266220;266221;266222;266223;266224;266225	266220			14	
LLDSWFTSTQEKK	2	Unmodified	1581.8039	0.80387296	3548	Q8N5M9	JAGN1	Protein jagunal homolog 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		70.59	70.59	3	0.05076	63213	160511_QHF_FH_JSI11i_3	20.106	1.2739			1.1546	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1546	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	533250000	278710000	254550000	0	0	0	0	0	0	533250000	278710000	254550000	0	0	0	31762	3548	30051	196726	266226	266226			1	
LLDTIGISQPQWR	0	Unmodified	1525.8253	0.8252771	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.272	73.405	2	3.6776E-15	65234	160511_QHF_FH_JSI10i_2	156.48	129.97			1.0873	1.1034	11.764	4	0	Median	1.1286	0.9606	NaN	1	0	Median	0.83386	1.0385	NaN	1	0	Median	1.2352	1.2473	NaN	1	0	Median	1.0475	1.1724	NaN	1	0	Median	436400000	221160000	215240000	85008000	39509000	45500000	94981000	57924000	37057000	169260000	77305000	91960000	87148000	46425000	40722000	31763	1296	30052	196727;196728;196729;196730	266227;266228;266229;266230	266230			4	
LLDTLRETQETLALTQGK	1	Unmodified	2029.1055	0.10553429	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		72.713	72.713	3	0.016404	64885	160511_QHF_FH_JSI11i_3	39.523	22.644			1.2766	1.186	32.229	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2766	1.186	32.229	2	2	Median	NaN	NaN	NaN	0	0	Median	70078000	30140000	39938000	0	0	0	0	0	0	70078000	30140000	39938000	0	0	0	31764	2357	30053	196731;196732	266231;266232	266232			2	
LLDTNPEINQSDSQDSR	0	Unmodified	1930.8868	0.88682732	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	37.697	37.28	2	1.8192E-34	33365	160511_QHF_FH_JSI10i_1	158.2	124.98			1.5715	1.5259	44.24	3	3	Median	NaN	NaN	NaN	0	0	Median	0.65231	0.7716	NaN	1	1	Median	1.5715	1.5259	NaN	1	1	Median	1.6543	1.7682	NaN	1	1	Median	54496000	22612000	31885000	0	0	0	16174000	10830000	5343700	15492000	5004800	10487000	22831000	6776600	16054000	31765	2554	30054	196733;196734;196735;196736;196737	266233;266234;266235;266236;266237	266236			5	
LLDTVDDMLANDIAR	0	Unmodified	1673.8294	0.82943578	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								2	4	5	5	86.516	86.004	2;3	4.0805E-10	78183	160511_QHF_FH_JSI10i_1	151.55	132.23			0.94847	0.87845	45.513	14	9	Median	1.1961	1.0108	20.565	2	0	Median	0.92774	1.0705	61.252	4	3	Median	1.1158	1.0776	40.527	4	3	Median	0.75987	0.77786	58.405	4	3	Median	296090000	158050000	138040000	34104000	14217000	19887000	107540000	66236000	41299000	92931000	41853000	51078000	61518000	35743000	25775000	31766	4727	30055	196738;196739;196740;196741;196742;196743;196744;196745;196746;196747;196748;196749;196750;196751;196752;196753	266238;266239;266240;266241;266242;266243;266244;266245;266246;266247;266248;266249;266250;266251;266252;266253;266254;266255;266256;266257	266247			20	
LLDVDNR	0	Unmodified	843.44503	0.4450311	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			2	2	2	4	24.193	22.544	2	0.014075	19357	160511_QHF_FH_JSI9i_2	66.799	25.297			1.0284	1.0688	9.9051	9	2	Median	1.2852	1.0898	12.969	2	1	Median	0.8909	1.0673	9.3673	2	0	Median	0.98315	0.98109	12.108	2	0	Median	1.0284	1.1318	10.72	3	1	Median	3049700000	1550800000	1498800000	598210000	282770000	315440000	704280000	404160000	300110000	936460000	458290000	478170000	810740000	405630000	405110000	31767	767	30056	196754;196755;196756;196757;196758;196759;196760;196761;196762;196763	266258;266259;266260;266261;266262;266263;266264;266265;266266;266267;266268;266269;266270;266271;266272;266273	266267			16	
LLDVDNRVVLPIEAPIR	0	Unmodified	1931.1204	0.12039649	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	89.493	89.297	3	1.9515E-06	77501	160511_QHF_FH_JSI12i_3	106.82	84.979			1.617	1.5629	12.225	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.617	1.9659	NaN	1	1	Median	1.9818	1.8029	NaN	1	0	Median	1.5371	1.5444	NaN	1	0	Median	172410000	71871000	100540000	0	0	0	25173000	10033000	15140000	40640000	15566000	25075000	106600000	46272000	60328000	31768	767	30057	196764;196765;196766	266274;266275;266276;266277;266278	266277			5	
LLDVIHTENK	1	Unmodified	1180.6452	0.64518747	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	4	3	36.714	35.914	2;3	6.3379E-08	30492	160511_QHF_FH_JSI11i_2	99.283	61.262			1.9546	1.7978	79.209	9	7	Median	2.8982	2.4199	42.028	2	2	Median	0.78441	0.967	NaN	1	0	Median	1.0602	1.0754	66.139	3	2	Median	2.5323	2.5114	121.36	3	3	Median	1045600000	517430000	528210000	118480000	45551000	72929000	186950000	101520000	85427000	386260000	170980000	215280000	353950000	199380000	154570000	31769	1252	30058	196767;196768;196769;196770;196771;196772;196773;196774;196775;196776;196777	266279;266280;266281;266282;266283;266284;266285;266286;266287;266288;266289;266290	266284			12	
LLDVTGGLGTDELR	0	Unmodified	1457.7726	0.77257283	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	2	2										2	2	72.33	71.593	2	0.00038018	61663	160511_QHF_FH_JSI12i_2	76.655	56.514			0.96636	1.0348	21.73	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80406	0.77162	NaN	1	0	Median	1.0184	1.1048	9.2526	2	0	Median	104260000	54795000	49464000	0	0	0	0	0	0	36710000	18774000	17936000	67549000	36021000	31527000	31770	5639	30059	196778;196779;196780;196781	266291;266292;266293;266294	266292			3	
LLDVVHPAAK	1	Unmodified	1061.6233	0.62332982	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	6.52	5	15	5					4	9	7	8	12	11	36.672	33.081	2;3	6.114E-07	28275	160511_QHF_FH_JSI12i_2	121.09	78.223			1.0121	1.0009	71.219	34	24	Median	1.2373	1.0135	48.92	6	2	Median	0.67017	0.78764	56.381	7	5	Median	1.0852	1.0414	64.246	12	11	Median	0.98225	1.0561	105.77	9	6	Median	14054000000	7111700000	6942200000	2230400000	960920000	1269500000	3346200000	1874000000	1472200000	5157300000	2644400000	2512800000	3320100000	1632300000	1687700000	31771	4321	30060	196782;196783;196784;196785;196786;196787;196788;196789;196790;196791;196792;196793;196794;196795;196796;196797;196798;196799;196800;196801;196802;196803;196804;196805;196806;196807;196808;196809;196810;196811;196812;196813;196814;196815;196816;196817;196818;196819	266295;266296;266297;266298;266299;266300;266301;266302;266303;266304;266305;266306;266307;266308;266309;266310;266311;266312;266313;266314;266315;266316;266317;266318;266319;266320;266321;266322;266323;266324;266325;266326;266327;266328;266329;266330;266331;266332;266333;266334;266335;266336;266337;266338;266339;266340;266341;266342;266343;266344;266345;266346;266347;266348	266304			54	
LLDYLQENPK	1	Unmodified	1231.6449	0.64485312	749	O95999	BCL10	B-cell lymphoma/leukemia 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	50.182	49.222	2	0.00094758	43461	160511_QHF_FH_JSI10i_2	81.163	41.839			0.43066	0.4393	109.81	5	5	Median	NaN	NaN	NaN	0	0	Median	0.3569	0.4393	NaN	1	1	Median	1.3017	1.2936	156.09	2	2	Median	0.84135	0.92141	126.85	2	2	Median	172930000	85050000	87882000	0	0	0	27431000	20505000	6925400	91450000	39731000	51720000	54050000	24814000	29237000	31772	749	30061	196820;196821;196822;196823;196824	266349;266350;266351;266352;266353;266354	266354			6	
LLDYSLHK	1	Unmodified	987.53893	0.53893149	4406	Q9BT09	CNPY3	Protein canopy homolog 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.568	35.145	3	0.006934	29933	160511_QHF_FH_JSI11i_2	49.715	18.641			0.69172	0.65984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69172	0.65984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17011000	12071000	4939600	0	0	0	0	0	0	17011000	12071000	4939600	0	0	0	31773	4406	30062	196825	266355	266355			1	
LLDYVPIGPR	0	Unmodified	1141.6495	0.64954457	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.12	66.218	2	0.012142	57088	160511_QHF_FH_JSI12i_2	51.749	35.546			1.0767	1.058	9.051	4	0	Median	1.2106	1.0481	NaN	1	0	Median	0.86026	1.0311	NaN	1	0	Median	1.2494	1.2542	NaN	1	0	Median	0.95759	1.068	NaN	1	0	Median	619140000	311760000	307380000	122460000	55191000	67272000	153990000	90880000	63115000	197350000	88732000	108620000	145330000	76957000	68377000	31774	1586	30063	196826;196827;196828;196829	266356;266357	266356			2	
LLEAAAQSTK	1	Unmodified	1030.5659	0.56587452	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	17.633	17.07	2	8.369E-05	14513	160511_QHF_FH_JSI11i_1	101.65	38.081			0.97077	0.98295	25.025	3	3	Median	0.78802	0.65276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0364	1.0279	NaN	1	1	Median	0.97077	0.98295	NaN	1	1	Median	384650000	217220000	167420000	141480000	82430000	59050000	0	0	0	111560000	63761000	47798000	131610000	71032000	60576000	31775	2636	30064	196830;196831;196832	266358;266359;266360	266358			3	
LLEAAITPETK	1	Unmodified	1184.6653	0.66525421	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.04	4	4				2	4			2	4	4	4	49.923	45.4	2	4.8605E-07	25538	160513_QHF_FH_JSI12Kac_4	109.42	87.333			0.91346	0.98329	24.567	13	4	Median	1.1191	0.93453	17.405	2	0	Median	0.85145	1.0105	7.9416	3	0	Median	0.85814	0.8453	17.079	4	2	Median	0.94851	1.0085	37.657	4	2	Median	1452000000	724010000	728000000	274290000	130310000	143980000	367910000	198400000	169520000	400970000	204550000	196420000	408840000	190760000	218080000	31776	1397	30065	196833;196834;196835;196836;196837;196838;196839;196840;196841;196842;196843;196844;196845;196846	266361;266362;266363;266364;266365;266366;266367;266368;266369;266370;266371;266372;266373;266374;266375;266376;266377;266378;266379;266380;266381;266382;266383;266384;266385	266382			25	
LLEAASVSSK	1	Unmodified	1003.555	0.55497548	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.39	7	5					1			3	4	3	3	26.112	24.714	2	0.00010642	20554	160511_QHF_FH_JSI12i_2	99.815	47.099			0.74909	0.75818	72.835	13	13	Median	2.0493	1.1923	70.596	3	3	Plateau	0.51701	0.61969	53.896	4	4	Median	0.74909	0.75818	100.13	3	3	Median	0.78015	0.84325	106.79	3	3	Median	1786300000	916010000	870310000	432050000	206500000	225550000	533200000	303880000	229330000	473730000	226850000	246880000	347330000	178780000	168550000	31777	1085	30066	196847;196848;196849;196850;196851;196852;196853;196854;196855;196856;196857;196858;196859	266386;266387;266388;266389;266390;266391;266392;266393;266394;266395;266396;266397;266398	266388			13	
LLEACTFHKP	1	Unmodified	1214.6118	0.61177885	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	35.293	35.229	3	0.0013634	30794	160511_QHF_FH_JSI11i_3	54.471	36.159		+	1.6902	1.6191	21.011	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5214	1.3956	NaN	1	0	Median	1.8778	1.8784	NaN	1	1	Median	158970000	66593000	92381000	0	0	0	0	0	0	69638000	27924000	41714000	89336000	38669000	50667000	31778	66	30067	196860;196861	266399;266400	266399			2	
LLEAFHNQGPVIK	1	Unmodified	1464.8089	0.80889876	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	3	4	3	49.941	49.189	2;3	5.7063E-07	41783	160511_QHF_FH_JSI12i_3	177.06	138.76			1.9156	2.1499	82.808	12	12	Median	1.3254	1.1471	131.28	2	2	Median	1.5402	1.905	104.06	3	3	Median	1.6938	1.6398	95.83	4	4	Median	2.3804	2.4263	23.64	3	3	Median	2178100000	1074200000	1103900000	245410000	112220000	133190000	274800000	182110000	92687000	804390000	395190000	409200000	853560000	384730000	468830000	31779	5532	30068	196862;196863;196864;196865;196866;196867;196868;196869;196870;196871;196872;196873	266401;266402;266403;266404;266405;266406;266407;266408;266409;266410;266411;266412;266413	266412			13	
LLEAHEEQNVDSYTESVK	1	Unmodified	2089.9804	0.98039335	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	3	9	3							2	4	4	5	45.196	44.431	2;3	3.3748E-66	38156	160511_QHF_FH_JSI11i_2	260.85	246.28			0.88832	0.9554	37.626	14	5	Median	1.1886	1.0209	9.4155	2	0	Median	0.80766	0.96527	72.573	4	2	Median	1.088	1.0723	10.933	3	1	Median	0.84046	0.93231	22.443	5	2	Median	2033100000	1017000000	1016100000	334630000	152080000	182550000	491180000	257040000	234130000	571320000	291440000	279880000	635990000	316450000	319540000	31780	1838	30069	196874;196875;196876;196877;196878;196879;196880;196881;196882;196883;196884;196885;196886;196887;196888	266414;266415;266416;266417;266418;266419;266420;266421;266422;266423;266424;266425;266426;266427;266428;266429;266430;266431;266432;266433;266434;266435;266436;266437;266438;266439;266440;266441;266442;266443;266444;266445;266446;266447;266448;266449	266439			36	
LLEAMETCNHSLKK	2	Oxidation (M)	1688.8226	0.82257627	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	1	1		By MS/MS	By MS/MS		1	0	2										1	1		58.101	57.693	2	0.023867	52123	160511_QHF_FH_JSI10i_1	72.643	8.6028			0.14413	0.14653	256.1	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84894	0.89621	NaN	1	0	Median	0.024471	0.023958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16586000000	9659200000	6926900000	0	0	0	11943000000	5203100000	6739500000	4643500000	4456100000	187400000	0	0	0	31781	3482	30070	196889;196890	266450;266451	266451			2	
LLEAQACTGGIIHPTTGQK	1	Unmodified	1994.0255	0.025509829	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	4	2	46.959	46.332	3	1.24E-18	39519	160511_QHF_FH_JSI12i_3	162.09	153.04			1.2739	1.2453	30.987	9	7	Median	1.345	1.1347	NaN	1	0	Median	0.9996	1.2211	33.991	2	2	Median	1.0578	1.0389	21.176	4	4	Median	1.8138	1.8978	14.903	2	1	Median	1381500000	652800000	728740000	53470000	25387000	28083000	255360000	135730000	119630000	747420000	370260000	377160000	325290000	121420000	203870000	31782	1085	30071	196891;196892;196893;196894;196895;196896;196897;196898;196899	266452;266453;266454;266455;266456;266457;266458;266459;266460;266461	266461			10	
LLEAQIASGGVVDPVNSVFLPK	1	Unmodified	2252.2416	0.24163384	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	1	3	100.87	100.74	3	7.0778E-08	91420	160511_QHF_FH_JSI10i_1	85.062	81.39			0.83235	0.93858	29.784	7	1	Median	1.2698	1.0713	64.814	2	0	Median	0.8128	0.9782	NaN	1	0	Median	0.98045	0.93858	NaN	1	0	Median	0.83235	0.93503	21.22	3	1	Median	699430000	362110000	337320000	152910000	73225000	79688000	126010000	67830000	58181000	108360000	52487000	55872000	312150000	168570000	143580000	31783	1085	30072	196900;196901;196902;196903;196904;196905;196906	266462;266463;266464;266465;266466;266467;266468	266466			7	
LLEAQIATGGIIDPEESHRLPVEVAYK	1	Unmodified	2947.5655	0.56548717	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	85.774	85.673	3;4	3.7837E-13	74362	160511_QHF_FH_JSI12i_3	91.389	81.592			1.1603	1.1862	2.7454	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3276	1.2373	NaN	1	1	Median	1.0952	1.2155	3.6011	2	1	Median	122840000	57663000	65177000	0	0	0	0	0	0	31425000	7317700	24108000	91415000	50345000	41070000	31784	2636	30073	196907;196908;196909;196910	266469;266470;266471;266472;266473	266472			5	
LLEAQIATGGIIDPK	1	Unmodified	1537.8716	0.87155859	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.872	73.002	2	0.0010189	64024	160511_QHF_FH_JSI11i_2	65.179	55.524			0.82133	0.75773	13.327	4	0	Linear	0.74802	0.63208	NaN	1	0	Median	0.60052	0.73669	NaN	1	0	Median	0.78543	0.77938	NaN	1	0	Median	0.79961	0.87058	NaN	1	0	Median	94207000	54665000	39542000	22131000	10972000	11159000	18880000	13862000	5017500	26114000	13818000	12296000	27083000	16013000	11070000	31785	1085	30074	196911;196912;196913;196914	266474;266475;266476;266477;266478;266479	266477			6	
LLEAQIATGGVIDPVHSHR	0	Unmodified	2012.0803	0.080322592	2636;1898	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.029	58.899	4	0.00028169	50727	160511_QHF_FH_JSI12i_3	54.117	37.238			1.153	1.1414	14.087	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3281	1.2609	NaN	1	0	Median	1.0011	1.0331	NaN	1	0	Median	244470000	104630000	139840000	0	0	0	0	0	0	108550000	35520000	73032000	135920000	69107000	66811000	31786	2636;1898	30075	196915;196916	266480;266481;266482;266483	266483			4	
LLEAQSHFR	0	Unmodified	1099.5774	0.57744226	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	2	2	2	22.693	22.202	2;3	0.00013481	18726	160511_QHF_FH_JSI11i_3	83.456	74.134			1.1794	0.67733	32.089	7	1	Linear	1.401	1.1686	NaN	1	0	Median	1.3956	1.6463	9.4179	2	1	Median	1.0883	1.0705	14.49	2	0	Median	0.75708	0.76873	4.6264	2	0	Median	683000000	374740000	308270000	63706000	30540000	33166000	99376000	44701000	54676000	226670000	122090000	104580000	293250000	177410000	115840000	31787	2470	30076	196917;196918;196919;196920;196921;196922;196923;196924	266484;266485;266486;266487;266488;266489;266490;266491;266492;266493;266494	266485			11	
LLECHFMPPEK	1	Unmodified	1399.6628	0.66282815	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	65.113	64.002	2	0.028164	54904	160511_QHF_FH_JSI12i_2	47.823	28.165			1.4386	1.4079	1.8189	2	2	Median	1.6294	1.3899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2702	1.4261	NaN	1	1	Median	209420000	88364000	121060000	115470000	35105000	80368000	0	0	0	0	0	0	93949000	53259000	40690000	31788	4547	30077	196925;196926	266495;266496	266495			2	
LLECPWLQQQHK	1	Unmodified	1578.7977	0.79768214	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.456	52.221	3	3.1237E-05	44796	160511_QHF_FH_JSI12i_3	100.69	93.317			0.89231	0.95749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89231	0.95749	NaN	1	1	Median	47654000	29454000	18201000	0	0	0	0	0	0	0	0	0	47654000	29454000	18201000	31789	2547	30078	196927	266497	266497			1	
LLEDFGDGGAFPEIHVAQYPLDMGRK	1	Unmodified	2874.4011	0.40106438	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	95.484	95.492	4	2.7443E-06	82734	160511_QHF_FH_JSI12i_3	58.272	51.397			0.85259	0.86524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85259	0.86524	NaN	1	1	Median	34308000	21185000	13122000	0	0	0	0	0	0	0	0	0	34308000	21185000	13122000	31790	2443	30079	196928	266498	266498			1	
LLEDFLQEGEEPDEDDAYQVLSTLK	1	Unmodified	2895.3549	0.35494486	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	4	1	83.253	82.78	3	9.8707E-05	72840	160511_QHF_FH_JSI9i_2	43.198	36.903			0.86437	0.83151	23.024	7	2	Median	0.96675	0.83876	NaN	1	0	Median	0.67378	0.82771	NaN	1	0	Median	0.84679	0.82485	30.648	4	2	Median	0.91711	1.0245	NaN	1	0	Median	400750000	196860000	203890000	78577000	40092000	38485000	82780000	38599000	44181000	209010000	104890000	104110000	30386000	13272000	17114000	31791	3521	30080	196929;196930;196931;196932;196933;196934;196935	266499;266500;266501;266502;266503;266504;266505;266506;266507;266508	266503			10	
LLEDGEDFNLGDALDSSNSMQTIQK	1	Unmodified	2739.2545	0.2545193	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.815	15		4							5	4	4	6	90.875	90.402	2;3;4	0	82024	160511_QHF_FH_JSI12i_1	291.81	289.73			0.98444	0.98819	25.656	18	5	Median	0.99585	0.83031	31.85	5	2	Median	0.64247	0.791	10.493	4	0	Linear	1.0013	0.96285	5.0269	4	2	Linear	0.97316	1.0246	38.827	5	1	Median	8895300000	4240100000	4655200000	1219100000	528980000	690090000	2659000000	1479500000	1179500000	2750500000	1171300000	1579200000	2266700000	1060300000	1206400000	31792	842	30081	196936;196937;196938;196939;196940;196941;196942;196943;196944;196945;196946;196947;196948;196949;196950;196951;196952;196953;196954	266509;266510;266511;266512;266513;266514;266515;266516;266517;266518;266519;266520;266521;266522;266523;266524;266525;266526;266527;266528;266529;266530;266531;266532;266533;266534;266535;266536;266537;266538;266539;266540;266541;266542;266543;266544;266545;266546;266547;266548;266549;266550;266551;266552;266553;266554;266555;266556;266557;266558	266525			50	
LLEDGEDFNLGDALDSSNSMQTIQK	1	Oxidation (M)	2755.2494	0.24943393	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	82.907	82.442	2;3	4.5319E-35	75095	160511_QHF_FH_JSI11i_1	182.7	115.34			0.91134	0.90597	18.783	8	0	Median	0.91435	0.73586	4.7516	2	0	Median	0.94645	1.0944	26.775	2	0	Median	0.98517	0.96748	8.3957	2	0	Median	0.84843	0.89955	1.0603	2	0	Median	1431700000	737380000	694290000	279700000	156070000	123630000	451940000	239660000	212280000	402520000	189870000	212650000	297510000	151780000	145730000	31793	842	30081	196955;196956;196957;196958;196959;196960;196961;196962	266559;266560;266561;266562;266563;266564;266565;266566;266567;266568;266569;266570;266571;266572;266573;266574;266575;266576;266577;266578;266579;266580	266561		361	22	
LLEDSEESSEETVSR	0	Unmodified	1708.7639	0.76391822	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.605	29.01	2	7.1131E-07	25741	160511_QHF_FH_JSI10i_1	131.43	113.17			0.66181	0.66462	19.11	4	2	Median	0.85181	0.68592	NaN	1	0	Median	0.40753	0.4635	NaN	1	1	Median	0.67189	0.64398	NaN	1	0	Median	0.65188	0.69664	NaN	1	1	Median	89654000	63175000	26479000	19327000	11452000	7875600	25217000	20112000	5104400	22549000	15277000	7272600	22561000	16335000	6226200	31794	398	30082	196963;196964;196965;196966	266581;266582;266583;266584;266585	266584			5	
LLEDTLFPSSK	1	Unmodified	1248.6602	0.66016884	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.506	64.875	2	0.016002	59013	160511_QHF_FH_JSI12i_1	50.353	24.794			0.58856	0.62654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58856	0.62654	NaN	1	1	Median	43000000	25517000	17483000	0	0	0	0	0	0	0	0	0	43000000	25517000	17483000	31795	4143	30083	196967	266586	266586			1	
LLEEALLR	0	Unmodified	955.57023	0.57023162	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	56.115	55.305	2	0.0020959	48833	160511_QHF_FH_JSI10i_2	82.671	24.504			1.1753	1.1016	15.829	3	1	Median	1.1753	0.99424	NaN	1	0	Median	0.89709	1.1016	NaN	1	0	Median	1.3405	1.3565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3200900000	1538400000	1662500000	750280000	349750000	400540000	979790000	532510000	447280000	1470800000	656110000	814680000	0	0	0	31796	2094	30084	196968;196969;196970;196971;196972	266587;266588;266589;266590;266591;266592;266593	266592			7	
LLEEAQLQDLEK	1	Unmodified	1427.7508	0.75077476	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.603	61.165	2	0.00013258	55495	160511_QHF_FH_JSI11i_1	101.39	81.403			0.67544	0.65433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67544	0.65433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33768000	21978000	11789000	0	0	0	0	0	0	33768000	21978000	11789000	0	0	0	31797	4997	30085	196973	266594	266594			1	
LLEEDVK	1	Unmodified	844.4542	0.45419881	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.18	22.641	2	0.01549	19988	160511_QHF_FH_JSI12i_1	64.567	29.073			0.18104	0.16299	11.962	4	0	Median	0.19524	0.1617	NaN	1	0	Median	0.13577	0.16117	NaN	1	0	Median	0.16851	0.16429	NaN	1	0	Median	0.1945	0.20615	NaN	1	0	Median	2187600000	1806700000	380890000	508200000	374470000	133730000	464500000	404310000	60191000	469920000	395490000	74431000	745000000	632470000	112540000	31798	1016	30086	196974;196975;196976;196977	266595;266596	266596			2	
LLEEEDSK	1	Unmodified	961.46041	0.4604064	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	3	1	15.027	12.629	2	0.013508	11033	160511_QHF_FH_JSI12i_1	52.255	3.972			0.63048	0.61291	43.849	7	3	Median	1.435	1.1684	NaN	1	0	Median	0.37298	0.43539	39.382	2	2	Median	0.63048	0.61291	30.458	3	1	Median	0.90015	0.96476	NaN	1	0	Median	1174100000	670490000	503560000	282270000	131400000	150870000	244210000	169000000	75209000	368890000	208480000	160410000	278690000	161620000	117070000	31799	4014	30087	196978;196979;196980;196981;196982;196983;196984	266597;266598;266599;266600	266597			4	
LLEEEEK	1	Unmodified	888.44403	0.44402805	2911;4493	Q5M775;Q9BW85	SPECC1;CCDC94	Cytospin-B;Coiled-coil domain-containing protein 94	no	no	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	13.945	13.503	2	0.0080209	10873	160511_QHF_FH_JSI9i_1	85.265	26.661			0.92621	1.0023	11.681	4	0	Median	1.3254	1.096	NaN	1	0	Median	0.9402	1.1101	NaN	1	0	Median	0.91243	0.88813	NaN	1	0	Median	0.90043	0.91665	NaN	1	0	Median	671570000	383680000	287890000	152970000	78797000	74176000	172860000	102910000	69951000	169480000	95116000	74365000	176260000	106860000	69400000	31800	2911;4493	30088	196985;196986;196987;196988	266601;266602	266602			2	
LLEEEIIAFSK	1	Unmodified	1290.7071	0.70711903	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	79.961	79.125	2	7.8975E-05	68318	160511_QHF_FH_JSI12i_2	108.43	45.013			0.90527	1.0063	78.763	3	2	Plateau	NaN	NaN	NaN	0	0	Median	3.6922	4.4825	NaN	1	1	Median	1.3547	1.3779	NaN	1	1	Median	0.90527	1.0063	NaN	1	0	Median	287580000	111150000	176430000	0	0	0	115790000	25447000	90342000	98113000	43768000	54345000	73676000	41932000	31744000	31801	5192	30089	196989;196990;196991	266603;266604;266605;266606	266604			4	
LLEEERR	0	Unmodified	943.50869	0.50869399	3634;2903	Q8NE71;Q5JSZ5	ABCF1;PRRC2B	ATP-binding cassette sub-family F member 1;Protein PRRC2B	no	no	0	0	0	1			By matching	By MS/MS	3	0			4									2	2	8.3191	8.3679	2;3	0.0035191	5785	160511_QHF_FH_JSI12i_3	104.37	17.893			0.9182	0.884	5.7831	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0048	0.92683	3.1098	2	0	Median	0.82864	0.84585	2.6572	2	0	Median	976160000	509890000	466270000	0	0	0	0	0	0	500340000	241870000	258470000	475820000	268020000	207800000	31802	3634;2903	30090	196992;196993;196994;196995	266607;266608;266609;266610	266609			4	
LLEEESSK	1	Unmodified	933.46549	0.46549177	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.045	11.642	2	0.0014189	9297	160511_QHF_FH_JSI11i_1	89.752	62.227			1.5587	1.5283	33.794	4	3	Median	1.5961	1.3264	NaN	1	1	Median	1.5222	1.7609	NaN	1	1	Median	0.89112	0.86604	NaN	1	0	Median	1.6617	1.7793	NaN	1	1	Median	793210000	353700000	439520000	150700000	77915000	72784000	165880000	67971000	97907000	208490000	108310000	100170000	268150000	99495000	168650000	31803	5289	30091	196996;196997;196998;196999	266611;266612;266613;266614;266615	266611			5	
LLEEGVLR	0	Unmodified	927.53893	0.53893149	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.028	32.986	2	0.05966	28649	160511_QHF_FH_JSI9i_2	35.149	4.895			1.1902	1.015	NaN	1	0	Median	1.1902	1.015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148830000	67757000	81069000	148830000	67757000	81069000	0	0	0	0	0	0	0	0	0	31804	3111	30092	197000	266616	266616			1	
LLEEHAK	1	Unmodified	838.45487	0.45486751	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	3.68		7	3					1		4	2	3	2	7.9597	6.6031	2;3	0.004306	5132	160511_QHF_FH_JSI10i_3	57.281	41.649			0.99685	1.0314	27.228	5	0	Median	1.4656	1.2178	38.194	2	0	Median	0.6138	0.75711	NaN	1	0	Median	0.99685	1.0326	NaN	1	0	Median	0.93039	1.0314	NaN	1	0	Median	3482000000	1236500000	2245500000	919470000	257850000	661620000	554980000	373510000	181480000	1059700000	327650000	732010000	947870000	277470000	670400000	31805	1741	30093	197001;197002;197003;197004;197005;197006;197007;197008;197009;197010;197011	266617;266618;266619;266620;266621;266622;266623;266624;266625;266626	266618			10	
LLEELEEGQK	1	Unmodified	1186.6081	0.60813326	2715;2398	Q13404;Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.76	4.62	6	7	1			1	2			3	6	3	5	40.441	37.948	2	1.0242E-09	32545	160511_QHF_FH_JSI12i_2	129.42	100			1.4654	1.4537	126.16	16	16	Median	0.34672	0.28602	92.238	3	3	Median	2.1115	2.5164	140.76	6	6	Median	1.3942	1.4085	137.11	3	3	Median	1.4945	1.6021	137.24	4	4	Median	7696500000	4430600000	3266000000	995440000	656900000	338540000	2610800000	1545800000	1065100000	2438800000	1206300000	1232500000	1651500000	1021600000	629870000	31806	2398;2715	30094	197012;197013;197014;197015;197016;197017;197018;197019;197020;197021;197022;197023;197024;197025;197026;197027;197028	266627;266628;266629;266630;266631;266632;266633;266634;266635;266636;266637;266638;266639;266640;266641;266642;266643;266644	266630			18	
LLEELLNK	1	Unmodified	970.5699	0.56989727	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		57.955	57.26	2	0.021447	50563	160511_QHF_FH_JSI10i_2	55.676	18.118			0.49428	0.55524	15.265	2	2	Median	NaN	NaN	NaN	0	0	Median	0.50314	0.61853	NaN	1	1	Median	0.48558	0.49843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37628000	27031000	10597000	0	0	0	14519000	10863000	3655400	23110000	16168000	6942100	0	0	0	31807	4159	30095	197029;197030	266645;266646	266646			2	
LLEENVSAFK	1	Unmodified	1148.6077	0.60773933	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	50.424	49.595	2	1.5651E-05	42832	160511_QHF_FH_JSI11i_2	100.02	59.749			0.83148	0.8255	52.741	8	0	Median	0.97817	0.81852	15.046	2	0	Median	0.34153	0.40949	100.28	2	0	Median	0.93519	0.93744	19.115	2	0	Median	0.78727	0.82738	18.746	2	0	Median	1400500000	811630000	588870000	286400000	134610000	151790000	289100000	214130000	74968000	470700000	256780000	213920000	354300000	206100000	148200000	31808	4989	30096	197031;197032;197033;197034;197035;197036;197037;197038	266647;266648;266649;266650;266651;266652;266653;266654;266655;266656	266654			8	
LLEEQLQHEISNK	1	Unmodified	1579.8206	0.82058566	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		4									1	1	2	48.487	47.418	2;3	2.9293E-05	40622	160511_QHF_FH_JSI12i_2	130.44	95.872			0.82955	0.88397	31.22	4	2	Median	NaN	NaN	NaN	0	0	Median	0.52947	0.64352	NaN	1	1	Median	0.83217	0.83189	NaN	1	0	Median	1.0068	1.1315	26.331	2	1	Median	581910000	294290000	287610000	0	0	0	253990000	132270000	121720000	66781000	34819000	31962000	261140000	127210000	133930000	31809	3328	30097	197039;197040;197041;197042	266657;266658;266659	266657			3	
LLEEYTQLAR	0	Unmodified	1234.6558	0.65575216	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	53.455	52.599	2	0.00046386	44881	160511_QHF_FH_JSI12i_2	88.37	48.101			0.93358	1.0152	33.419	5	2	Median	1.2024	1.0152	NaN	1	0	Median	0.71482	0.87289	24.948	2	1	Median	0.93358	0.93119	NaN	1	0	Median	1.6266	1.8171	NaN	1	1	Median	488460000	242490000	245980000	72042000	28083000	43959000	150280000	86078000	64197000	144140000	74889000	69250000	122000000	53435000	68569000	31810	3372	30098	197043;197044;197045;197046;197047	266660;266661;266662;266663	266660			4	
LLEFQLALK	1	Unmodified	1073.6485	0.64848194	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	84.894	84.185	2	2.1385E-05	72820	160511_QHF_FH_JSI12i_2	106.36	63.233			0.9141	0.93703	10.291	4	0	Median	0.98663	0.84937	NaN	1	0	Median	0.82473	1.005	NaN	1	0	Median	0.87833	0.87363	NaN	1	0	Median	0.95133	1.0472	NaN	1	0	Median	249790000	119990000	129800000	38501000	19191000	19310000	49043000	25722000	23321000	87165000	42908000	44257000	75078000	32170000	42908000	31811	1386	30099	197048;197049;197050;197051	266664;266665	266664			2	
LLEFYDATAHFAK	1	Unmodified	1524.7613	0.76127986	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	70.287	69.339	3	5.5194E-05	60522	160511_QHF_FH_JSI11i_2	90.412	81.813			0.91866	0.98305	17.497	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86241	0.86865	NaN	1	0	Median	0.97857	1.1125	NaN	1	0	Median	117860000	59239000	58623000	0	0	0	0	0	0	69307000	35051000	34255000	48555000	24188000	24367000	31812	2119	30100	197052;197053	266666	266666			1	
LLEGEDAHLTQYK	1	Unmodified	1515.7569	0.75692277	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.64	1	7	1					3		1	4	4	3	42.417	39.116	2;3	3.3373E-15	33555	160511_QHF_FH_JSI11i_2	157.68	141.01		+	0.72177	0.72352	45.892	12	8	Median	0.92201	0.80495	NaN	1	0	Median	0.71997	0.87118	47.731	4	4	Median	1.0168	0.98653	53.426	4	1	Median	0.42534	0.50957	22.775	3	3	Plateau	1538900000	738370000	800570000	57310000	27762000	29548000	138760000	76733000	62023000	1053200000	458440000	594790000	289640000	175430000	114210000	31813	65	30101	197054;197055;197056;197057;197058;197059;197060;197061;197062;197063;197064;197065	266667;266668;266669;266670;266671;266672;266673;266674;266675;266676;266677;266678;266679;266680;266681	266673			15	
LLEGEDAHLTQYKK	2	Unmodified	1643.8519	0.85188578	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	32.357	32.31	3	0.015582	28035	160511_QHF_FH_JSI11i_3	40.983	29.007		+	1.8212	1.7947	62.671	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2179	1.1522	NaN	1	1	Median	2.7232	2.7954	NaN	1	1	Median	103140000	38004000	65139000	0	0	0	0	0	0	37429000	12418000	25011000	65713000	25585000	40128000	31814	65	30102	197066;197067	266682;266683	266682			2	
LLEGEEER	0	Unmodified	973.47164	0.47163978	791;1180;2207	P02545;Q03252;P20700	LMNA;LMNB2;LMNB1	Prelamin-A/C;Lamin-A/C;Lamin-B2;Lamin-B1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.29	4	4				3	2	3		2	5	4	5	16.859	12.402	2	2.1625E-07	11428	160511_QHF_FH_JSI10i_1	154.35	101.67			0.99351	1.0149	15.51	16	0	Median	1.254	1.0555	8.227	2	0	Median	0.8007	0.95575	23.342	5	0	Median	1.079	1.0718	19.927	4	0	Median	0.9415	1.0302	5.7143	5	0	Median	16702000000	8522800000	8178800000	3666000000	1768400000	1897600000	4324900000	2407100000	1917800000	4382700000	2117400000	2265300000	4328000000	2230000000	2098000000	31815	791;2207;1180	30103	197068;197069;197070;197071;197072;197073;197074;197075;197076;197077;197078;197079;197080;197081;197082;197083	266684;266685;266686;266687;266688;266689;266690;266691;266692;266693;266694;266695;266696;266697;266698;266699	266691			16	
LLEGEEERLR	0	Unmodified	1242.6568	0.65681479	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		27.492	26.849	2;3	0.0025323	23355	160511_QHF_FH_JSI10i_2	49.189	15.811			1.2875	1.4284	7.4486	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2163	1.5056	NaN	1	1	Median	1.3629	1.3551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	310920000	147290000	163620000	0	0	0	284160000	136120000	148050000	26754000	11176000	15578000	0	0	0	31816	791	30104	197084;197085	266700;266701	266701			2	
LLEGEESR	0	Unmodified	931.46108	0.4610751	51;71;53;913;83;80	CON__P05787;P05787;CON__Q9H552;CON__P08729;CON__Q3KNV1;P08729;P08670;P17661;P41219;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7	KRT8;KRT7;VIM;DES;PRPH;KRT84	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Vimentin;Desmin;Peripherin;Keratin, type II cuticular Hb4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.76	6.18	4	3				4	3	3		4	5	4	4	15.084	9.4406	2	1.5611E-10	6827	160513_QHF_FH_JSI10Kac_4	150.17	78.027		+	0.93408	1.0155	17.489	17	3	Median	1.1107	0.91017	30.637	4	1	Median	0.89357	1.0658	15.512	5	1	Median	0.86193	1.0723	15.968	4	1	Linear	0.90314	0.95124	5.8746	4	0	Median	23841000000	11061000000	12781000000	5526700000	2340800000	3185900000	6010700000	2891400000	3119200000	6663900000	3225800000	3438100000	5640100000	2602800000	3037300000	31817	51;53;71;913;80;83	30105	197086;197087;197088;197089;197090;197091;197092;197093;197094;197095;197096;197097;197098;197099;197100;197101;197102	266702;266703;266704;266705;266706;266707;266708;266709;266710;266711;266712;266713;266714;266715;266716;266717;266718;266719;266720;266721	266707			20	
LLEGEESRLESGMQNMSIHTK	1	2 Oxidation (M)	2420.1312	0.13117347	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	2	1			By MS/MS		3	0			1									1		34.762	34.762	4	1.1032E-05	30281	160511_QHF_FH_JSI11i_3	63.056	55.064		+	0.87758	0.81751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87758	0.81751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77593000	41665000	35927000	0	0	0	0	0	0	77593000	41665000	35927000	0	0	0	31818	51	30106	197103	266722	266722		19;20	1	
LLEGEESRLESGMQNMSIHTK	1	Oxidation (M)	2404.1363	0.13625885	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.57		2	8						3	4	1	6	2	47.062	44.745	3;4	1.4182E-06	38682	160511_QHF_FH_JSI10i_2	76.027	68.203		+	1.3334	1.1605	24.717	13	8	Median	1.3592	1.1713	22.243	4	3	Median	0.95708	1.1477	NaN	1	0	Median	1.5492	1.4304	32.772	6	5	Median	1.0423	1.0655	12.083	2	0	Median	987600000	458050000	529540000	79091000	29082000	50009000	74625000	39127000	35498000	671610000	303670000	367950000	162270000	86179000	76090000	31819	51	30106	197104;197105;197106;197107;197108;197109;197110;197111;197112;197113;197114;197115;197116	266723;266724;266725;266726;266727;266728;266729;266730;266731;266732;266733;266734;266735;266736;266737;266738	266731		19;20	16	
LLEGEESRLESGMQNMSIHTK	1	Unmodified	2388.1413	0.14134422	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.21		8	8						1	3	4	5	5	60.11	58.936	2;3;4	2.337E-36	52144	160511_QHF_FH_JSI10i_2	187.06	158.19		+	1.0915	1.1482	15.947	17	4	Median	1.1154	0.94941	21.108	3	1	Plateau	0.91446	1.0871	11.237	4	0	Median	1.0626	1.278	13.246	5	1	Linear	0.95688	1.0642	20.382	5	2	Median	12089000000	5861700000	6227300000	1312700000	628020000	684630000	3155500000	1875800000	1279700000	5157200000	2161200000	2996000000	2463700000	1196700000	1267000000	31820	51	30106	197117;197118;197119;197120;197121;197122;197123;197124;197125;197126;197127;197128;197129;197130;197131;197132;197133	266739;266740;266741;266742;266743;266744;266745;266746;266747;266748;266749;266750;266751;266752;266753;266754;266755;266756;266757;266758;266759;266760;266761;266762;266763;266764;266765;266766;266767;266768;266769;266770	266763			32	
LLEGIGLENLDSPAATK	1	Unmodified	1739.9305	0.93053004	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	78.24	77.586	2	1.7909E-07	66956	160511_QHF_FH_JSI12i_2	123.64	81.638			0.47698	0.48214	32.67	6	6	Median	0.56859	0.48716	33.036	2	2	Median	0.80926	0.94358	NaN	1	1	Median	0.4727	0.47489	14.381	2	2	Median	0.4076	0.44217	NaN	1	1	Median	142980000	89020000	53957000	39947000	26621000	13327000	27764000	16045000	11719000	57487000	34539000	22947000	17778000	11814000	5964000	31821	486	30107	197134;197135;197136;197137;197138;197139;197140	266771;266772;266773;266774;266775;266776;266777	266772			7	
LLEGLSYYKPPSPSSAEK	2	Unmodified	1965.0095	0.0095086389	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	58.924	58.793	3	4.0169E-06	50726	160511_QHF_FH_JSI12i_3	86.727	75.911			1.1399	1.1167	44.175	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86145	0.81709	NaN	1	1	Median	1.5085	1.5261	NaN	1	1	Median	520280000	249290000	271000000	0	0	0	0	0	0	287310000	146540000	140770000	232980000	102750000	130230000	31822	2925	30108	197141;197142;197143;197144	266778;266779;266780;266781;266782;266783	266783			6	
LLEGPVPEEVGLK	1	Unmodified	1378.7708	0.77078192	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	66.787	66.324	2	0.00028612	60218	160511_QHF_FH_JSI11i_1	74.841	53.393			0.81449	0.79587	15.272	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.91432	1.073	NaN	1	1	Median	0.81449	0.79587	NaN	1	0	Median	0.83135	0.87475	NaN	1	0	Median	154250000	85181000	69066000	0	0	0	58232000	31510000	26722000	55138000	30748000	24390000	40877000	22922000	17955000	31823	3405	30109	197145;197146;197147	266784;266785;266786	266784			2	
LLEGTIVNVPEK	1	Unmodified	1310.7446	0.74456717	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.415	59.021	2	0.014497	53317	160511_QHF_FH_JSI10i_1	52.6	35.574			0.80937	0.97068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80937	0.97068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64507000	37162000	27345000	0	0	0	64507000	37162000	27345000	0	0	0	0	0	0	31824	598	30110	197148	266787	266787			1	
LLEHKEIDGR	1	Acetyl (K)	1250.6619	0.66190017	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	1	0	0	1		By matching	By MS/MS		15.2	0.433								3	1		1	3		36.119	26.436	2;3	0.00019677	15512	160513_QHF_FH_JSI11Kac_5	87.001	64.084			0.32776	0.32494	123.2	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1853	1.3987	NaN	1	0	Median	0.20026	0.19813	69.962	2	1	Median	NaN	NaN	NaN	0	0	Median	25539000	19685000	5854700	0	0	0	3558500	1443400	2115100	21981000	18241000	3739500	0	0	0	31825	2006	30111	197149;197150;197151;197152	266788;266789;266790	266789	2034		3	
LLEHLPQEVPYNVQQK	1	Unmodified	1934.0262	0.026161756	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	2	3	58.643	57.992	3	8.788E-05	49778	160511_QHF_FH_JSI12i_2	69.729	65.867			0.98706	1.0572	16.731	8	4	Median	1.2271	1.0319	22.416	2	2	Median	0.92962	1.1497	NaN	1	0	Median	1.0342	1.0084	20.058	2	0	Median	0.91809	0.9722	21.524	3	2	Median	711520000	376790000	334730000	132000000	57227000	74776000	99805000	59884000	39922000	258130000	147490000	110640000	221590000	112200000	109390000	31826	549	30112	197153;197154;197155;197156;197157;197158;197159;197160	266791;266792;266793;266794;266795;266796;266797;266798;266799;266800;266801;266802	266794			12	
LLEIDPYLK	1	Unmodified	1102.6274	0.62741214	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	73.132	72.557	2	0.012698	65844	160511_QHF_FH_JSI11i_1	47.198	23.347			1.3926	1.501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3926	1.501	NaN	1	1	Median	36782000	17639000	19143000	0	0	0	0	0	0	0	0	0	36782000	17639000	19143000	31827	2216	30113	197161;197162	266803;266804	266803			2	
LLEILRK	1	Unmodified	883.58549	0.58548775	5471	Q9UPY3	DICER1	Endoribonuclease Dicer	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		39.315	39.315	3	0.003018	34531	160511_QHF_FH_JSI11i_3	68.422	9.2163			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6647400	6647400	0	0	0	0	0	0	0	6647400	6647400	0	0	0	0	31828	5471	30114	197163;197164;197165	266805;266806;266807	266805			3	
LLEIVSYK	1	Unmodified	963.56408	0.56408361	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	6.27		4					2	3			2	4	3	62.739	55.579	2	0.012797	30081	160513_QHF_FH_JSI11Kac_5	62.546	28.996			0.91459	0.98624	41.671	8	3	Median	NaN	NaN	NaN	0	0	Median	0.80263	0.94147	7.989	2	0	Median	1.2669	1.2722	48.187	3	1	Median	0.72098	0.79463	43.676	3	2	Median	491880000	229500000	262370000	0	0	0	18426000	10150000	8275400	165560000	61849000	103720000	307890000	157500000	150380000	31829	3922	30115	197166;197167;197168;197169;197170;197171;197172;197173;197174	266808;266809;266810;266811;266812	266812			5	
LLEKHITK	2	Acetyl (K)	1022.6124	0.61243078	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	33.232	24.266	3	0.01289	13793	160513_QHF_FH_JSI10Kac_6	53.327	35.518			0.81137	0.83657	69.007	5	1	Median	1.0359	0.87508	6.364	2	0	Median	0.15281	0.17936	NaN	1	1	Median	0.61207	0.60149	NaN	1	0	Median	0.81137	0.89317	NaN	1	0	Median	37298000	24802000	12496000	7221100	3926400	3294700	5835400	5642500	192890	13662000	8522900	5138700	10580000	6710100	3869500	31830	2547	30116	197175;197176;197177;197178;197179	266813;266814;266815	266815	2533		2	
LLELADIDPTLRPR	0	Unmodified	1620.9199	0.91990577	3783	Q8WVM0	TFB1M	Dimethyladenosine transferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	78.746	78.28	3	7.228E-05	67974	160511_QHF_FH_JSI12i_3	94.287	86.844			0.99009	0.97031	8.6316	5	0	Median	1.2288	1.0279	NaN	1	0	Median	0.79824	0.97031	NaN	1	0	Median	1.0447	1.0247	14.491	2	0	Median	0.90524	0.92458	NaN	1	0	Median	226240000	124600000	101640000	25169000	12587000	12582000	37032000	23794000	13238000	95072000	51080000	43992000	68968000	37144000	31824000	31831	3783	30117	197180;197181;197182;197183;197184	266816;266817;266818;266819;266820;266821;266822;266823	266823			8	
LLELALQQYPR	0	Unmodified	1342.7609	0.76088593	4156	Q96KC8	DNAJC1	DnaJ homolog subfamily C member 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.694	70.401	2	0.049035	60704	160511_QHF_FH_JSI12i_2	53.756	42.927			1.5987	1.8072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5987	1.8072	NaN	1	1	Median	11128000	3858500	7269900	0	0	0	0	0	0	0	0	0	11128000	3858500	7269900	31832	4156	30118	197185	266824	266824			1	
LLELDPEHQR	0	Unmodified	1248.6463	0.64625011	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	37.76	36.808	2	8.8468E-05	31382	160511_QHF_FH_JSI11i_2	85.731	59.792			0.94916	0.9937	12.893	4	1	Median	1.4676	1.217	NaN	1	0	Median	0.7389	0.90742	NaN	1	1	Median	0.94778	0.95206	NaN	1	0	Median	0.95054	1.0372	NaN	1	0	Median	254900000	101420000	153470000	35145000	15752000	19393000	62000000	31434000	30567000	118640000	35338000	83303000	39111000	18901000	20209000	31833	1035	30119	197186;197187;197188;197189	266825;266826;266827;266828;266829	266827			5	
LLELDSFLK	1	Unmodified	1076.6118	0.61176208	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	3	3	3	90.579	90.157	2	5.0724E-06	79425	160511_QHF_FH_JSI9i_2	117.04	91.299			0.93079	0.88389	11.701	10	1	Plateau	1.0772	0.91705	NaN	1	0	Median	0.76729	0.92851	0.73881	3	0	Plateau	0.83428	0.84574	16.139	3	0	Plateau	0.75056	0.84447	16.805	3	1	Plateau	1174500000	621880000	552640000	169800000	79424000	90377000	322000000	182900000	139100000	369110000	188450000	180670000	313610000	171120000	142490000	31834	1950	30120	197190;197191;197192;197193;197194;197195;197196;197197;197198;197199	266830;266831;266832;266833;266834;266835;266836;266837;266838;266839;266840;266841;266842;266843	266838			14	
LLELEQDASSAK	1	Unmodified	1302.6667	0.66671078	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		42.147	41.368	2	0.0011866	37373	160511_QHF_FH_JSI11i_1	76.332	36.274			0.89822	0.81181	4.8428	2	2	Median	0.93036	0.78448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86719	0.84009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145210000	88425000	56783000	66260000	47478000	18782000	0	0	0	78948000	40947000	38001000	0	0	0	31835	3282	30121	197200;197201	266844;266845	266844			2	
LLELFPVNR	0	Unmodified	1099.639	0.63897988	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	76.483	75.999	2	0.00015238	66728	160511_QHF_FH_JSI11i_2	89.142	62.18			1.0528	1.1416	32.078	5	1	Median	1.8526	1.6549	NaN	1	0	Median	0.93533	1.1416	NaN	1	0	Median	1.0269	1.0028	3.1101	2	0	Median	1.8987	2.0356	NaN	1	1	Median	223650000	94728000	128920000	48212000	11320000	36892000	51386000	23248000	28138000	103700000	52554000	51148000	20350000	7606300	12744000	31836	5722	30122	197202;197203;197204;197205;197206	266846;266847;266848;266849;266850	266848			5	
LLELGPKPEVAQQTR	1	Unmodified	1677.9414	0.94136949	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	3	4	3	46.976	46.326	2;3	7.1771E-05	40738	160511_QHF_FH_JSI11i_3	87.647	46.026			0.80866	0.79449	17.148	9	4	Median	1.2005	1.0033	NaN	1	0	Median	0.80512	0.95059	25.243	2	1	Median	0.80866	0.75699	3.2891	3	1	Median	0.70656	0.72105	16.938	3	2	Median	1930900000	977910000	953020000	228200000	106640000	121570000	440290000	238510000	201780000	962500000	459670000	502830000	299930000	173090000	126830000	31837	1805	30123	197207;197208;197209;197210;197211;197212;197213;197214;197215;197216;197217	266851;266852;266853;266854;266855;266856;266857;266858;266859;266860;266861;266862;266863;266864	266851			14	
LLELGPKPEVAQQTRK	2	Unmodified	1806.0363	0.036332512	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				40.287	38.775	4	0.035925	31620	160511_QHF_FH_JSI9i_3	34.094	15.998			0.58352	0.47423	NaN	1	1	Median	0.58352	0.47423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59997000	39534000	20463000	59997000	39534000	20463000	0	0	0	0	0	0	0	0	0	31838	1805	30124	197218	266865	266865			1	
LLELIEGFMLSK	1	Unmodified	1391.7734	0.77342445	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.088	89.367	2	1.7057E-07	51515	160513_QHF_FH_JSI10Kac_6	138.71	85.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36079000	36079000	0	0	0	0	36079000	36079000	0	0	0	0	0	0	0	31839	713	30125	197219	266866	266866			1	
LLELIGHAVAHLK	1	Unmodified	1412.8504	0.85036964	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	68.437	67.352	4	0.00028673	57478	160511_QHF_FH_JSI12i_3	73.848	65.937			0.072042	0.066665	80.849	3	3	Plateau	0.23464	0.19454	NaN	1	1	Median	0.23714	0.28429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.059493	0.060283	NaN	1	1	Median	59895000	52949000	6946000	17345000	13703000	3642100	7923200	6580100	1343200	0	0	0	34626000	32666000	1960800	31840	941	30126	197220;197221;197222	266867;266868;266869	266869			3	
LLELLPGK	1	Unmodified	881.5586	0.5586043	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	62.419	61.59	2	0.0025205	54416	160511_QHF_FH_JSI10i_2	79.469	43.283			0.62767	0.76678	42.682	5	2	Median	1.373	1.1688	NaN	1	0	Median	0.62767	0.76678	NaN	1	0	Median	0.48222	0.48749	24.697	2	2	Median	0.92859	1.0297	NaN	1	0	Median	930540000	562950000	367590000	117770000	50994000	66776000	128160000	76994000	51164000	544080000	357960000	186110000	140540000	77001000	63539000	31841	3553	30127	197223;197224;197225;197226;197227	266870;266871;266872;266873;266874;266875;266876;266877	266877			8	
LLELLWNK	1	Unmodified	1027.6066	0.60661712	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	80.678	80.062	2	0.0022094	69243	160511_QHF_FH_JSI12i_2	90.777	57.261			0.19024	0.18815	158.25	8	8	Median	0.22982	0.19743	NaN	1	1	Median	0.20906	0.24635	44.918	2	2	Median	0.807	0.78723	227.37	2	2	Median	0.14598	0.1681	226.59	3	3	Median	313740000	192900000	120850000	30000000	22285000	7715600	51142000	36334000	14809000	108690000	56451000	52238000	123910000	77826000	46087000	31842	3905	30128	197228;197229;197230;197231;197232;197233;197234;197235	266878;266879;266880;266881;266882;266883;266884;266885	266879			8	
LLELQELVLR	0	Unmodified	1224.7442	0.74417324	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.799	92.326	2	0.00075787	81902	160511_QHF_FH_JSI10i_2	69.954	41.555			0.8892	0.94728	3.6671	4	1	Median	1.0772	0.93729	NaN	1	0	Median	0.80125	0.97543	NaN	1	0	Median	0.94937	0.95738	NaN	1	0	Median	0.83284	0.89574	NaN	1	1	Median	179470000	85823000	93644000	31994000	14352000	17642000	35921000	16672000	19249000	71442000	37590000	33852000	40109000	17208000	22901000	31843	2270	30129	197236;197237;197238;197239	266886;266887;266888;266889;266890;266891	266891			6	
LLELQSIGTNNFLR	0	Unmodified	1616.8886	0.88860564	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	3	2	4	89.329	88.777	2;3	3.9037E-15	79296	160511_QHF_FH_JSI11i_3	166.14	76.894			1.0034	0.98648	24.393	9	1	Median	1.0034	0.85396	NaN	1	0	Median	0.82154	0.98648	17.033	3	0	Median	0.9007	0.87657	24.26	2	0	Median	1.0835	1.1192	36.14	3	1	Median	686620000	363360000	323260000	82266000	35466000	46800000	103840000	61275000	42561000	250620000	130080000	120540000	249900000	136540000	113360000	31844	655	30130	197240;197241;197242;197243;197244;197245;197246;197247;197248;197249;197250	266892;266893;266894;266895;266896;266897;266898;266899;266900;266901;266902;266903;266904;266905	266893			14	
LLELQYFISR	0	Unmodified	1280.7129	0.71287311	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.828	91.341	2	0.015952	80274	160511_QHF_FH_JSI11i_2	50.805	7.7216			1.0539	1.0599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0539	1.0599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74520000	36711000	37809000	0	0	0	0	0	0	74520000	36711000	37809000	0	0	0	31845	3903	30131	197251	266906	266906			1	
LLELTQK	1	Unmodified	843.50657	0.50656873	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		33.179	32.78	2	0.033472	27872	160511_QHF_FH_JSI11i_2	52.018	2.3684			0.47169	0.48058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47169	0.48058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	275380000	207690000	67695000	0	0	0	0	0	0	275380000	207690000	67695000	0	0	0	31846	2899	30132	197252	266907	266907			1	
LLELTSSYSPDVSDYK	1	Unmodified	1815.8778	0.87782576	1475	P38432	COIL	Coilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	71.167	70.773	2	6.0776E-08	64544	160511_QHF_FH_JSI12i_1	136.38	94.376			0.91555	0.94625	29.855	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2731	1.5078	NaN	1	1	Median	0.88468	0.86439	NaN	1	1	Median	0.91555	0.94625	NaN	1	1	Median	138110000	70411000	67695000	0	0	0	45636000	23642000	21994000	40951000	21399000	19552000	51519000	25370000	26149000	31847	1475	30133	197253;197254;197255	266908;266909;266910	266909			3	
LLEMNLMHAPQVADAILGNQMFTHYDR	0	Oxidation (M)	3143.4991	0.49908064	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			101.09	100.92	4	1.5968E-13	83486	160511_QHF_FH_JSI10i_3	95.823	85.212			1.2574	1.4668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2574	1.4668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53511000	29197000	24314000	0	0	0	53511000	29197000	24314000	0	0	0	0	0	0	31848	2155	30134	197256	266911	266911		1800	1	
LLEMNLMHAPQVADAILGNQMFTHYDR	0	Unmodified	3127.5042	0.50416602	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			97.223	92.719	4	1.1581E-11	47324	160513_QHF_FH_JSI9Kac_6	130.46	119.15			1.4412	1.4578	34.783	2	1	Median	2.157	1.8643	NaN	1	1	Median	0.96295	1.1399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163730000	60397000	103330000	68427000	16946000	51482000	95303000	43451000	51853000	0	0	0	0	0	0	31849	2155	30134	197257;197258	266912;266913	266913			1	
LLEMVATHVGSVEK	1	Unmodified	1511.8018	0.80176447	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	51.536	51.536	2;3	8.5155E-05	44362	160511_QHF_FH_JSI12i_3	73.848	50.243			3.5058	3.3179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5058	3.3179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29332000	5592600	23739000	0	0	0	0	0	0	29332000	5592600	23739000	0	0	0	31850	204	30135	197259;197260	266914;266915	266915			2	
LLENISPADVGGMEETR	0	Unmodified	1829.8829	0.88292792	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	66.815	66.21	2	3.6654E-30	58754	160511_QHF_FH_JSI9i_1	185.87	167.13			1.2186	1.2196	34.802	5	4	Median	1.6755	1.3978	NaN	1	0	Median	1.4443	1.7358	NaN	1	1	Median	1.2186	1.1777	NaN	1	1	Median	0.89133	0.90979	41.444	2	2	Median	369660000	165410000	204260000	79275000	22674000	56601000	64737000	27132000	37604000	78069000	39289000	38779000	147580000	76311000	71271000	31851	3838	30136	197261;197262;197263;197264;197265;197266	266916;266917;266918;266919;266920;266921	266920			6	
LLENMPMPWEQIR	0	Unmodified	1655.8164	0.81636868	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	92.378	91.799	2	2.3001E-06	80734	160511_QHF_FH_JSI11i_2	120.96	60.441			0.74233	0.92669	16.175	3	3	Median	NaN	NaN	NaN	0	0	Median	0.74233	0.92669	NaN	1	1	Median	1.0391	1.0626	NaN	1	1	Median	0.68823	0.76985	NaN	1	1	Median	336890000	191250000	145640000	0	0	0	108130000	60495000	47631000	138570000	67576000	70992000	90198000	63181000	27017000	31852	3101	30137	197267;197268;197269	266922;266923;266924	266923			3	
LLENMTEVVRK	1	Unmodified	1330.7279	0.72787125	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				46.127	45.072	3	0.01341	39467	160511_QHF_FH_JSI9i_2	37.504	23.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31853	3111	30138	197270	266925	266925			1	
LLENPTINHQK	1	Unmodified	1305.7041	0.70409934	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	1	1	6	3	25.411	22.268	2;3	3.4416E-05	18780	160511_QHF_FH_JSI11i_3	91.313	56.307			0.93724	0.98671	65.419	9	4	Median	1.114	0.98671	NaN	1	0	Median	0.37705	0.44443	NaN	1	1	Median	0.83756	0.78728	84.074	5	3	Median	1.0155	1.0888	4.8167	2	0	Median	363140000	180310000	182830000	3079800	1583600	1496200	16819000	13603000	3216500	207790000	114290000	93497000	135450000	50832000	84619000	31854	2605	30139	197271;197272;197273;197274;197275;197276;197277;197278;197279;197280;197281	266926;266927;266928;266929;266930;266931;266932;266933;266934;266935	266927			10	
LLEPAQVQQLADK	1	Unmodified	1451.7984	0.79839365	3591	Q8NBI6	XXYLT1	Xyloside xylosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	61.337	60.697	2	0.00029938	53987	160511_QHF_FH_JSI9i_1	73.951	56.478			1.0774	1.0502	5.276	4	0	Median	1.1639	0.97154	NaN	1	0	Median	0.90647	1.0558	NaN	1	0	Median	1.1036	1.0446	NaN	1	0	Median	1.0518	1.1033	NaN	1	0	Median	171400000	81750000	89654000	38113000	18244000	19869000	41185000	19828000	21357000	51125000	24654000	26472000	40981000	19024000	21957000	31855	3591	30140	197282;197283;197284;197285	266936;266937;266938	266938			1	
LLEPFEVR	0	Unmodified	1001.5546	0.55458155	3772	Q8WUY1	THEM6	Protein THEM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.722	59.805	2	0.00028113	51917	160511_QHF_FH_JSI11i_2	113.7	73.593			1.0873	1.1844	7.1068	4	0	Median	1.4103	1.2202	NaN	1	0	Median	1.0413	1.2964	NaN	1	0	Median	1.1353	1.1495	NaN	1	0	Median	0.97516	1.1014	NaN	1	0	Median	716850000	328190000	388670000	134750000	58807000	75945000	174980000	80803000	94178000	254980000	116430000	138550000	152140000	72150000	79993000	31856	3772	30141	197286;197287;197288;197289	266939;266940;266941;266942;266943;266944;266945;266946	266944			8	
LLEPGSLGGIPSPAK	1	Unmodified	1434.8082	0.80823006	5651	Q9Y584	TIMM22	Mitochondrial import inner membrane translocase subunit Tim22	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	67.557	66.659	2	0.0011569	57410	160511_QHF_FH_JSI12i_2	63.727	44.947			0.94112	0.96442	9.2433	4	0	Median	0.99221	0.87002	NaN	1	0	Median	0.83919	1.0323	NaN	1	0	Median	0.90337	0.90102	NaN	1	0	Median	0.98045	1.0417	NaN	1	0	Median	87260000	43636000	43624000	17517000	6842700	10675000	14505000	5624600	8880700	28873000	15717000	13156000	26364000	15452000	10912000	31857	5651	30142	197290;197291;197292;197293	266947	266947			1	
LLEPLVTQVTTLVNTNSK	1	Unmodified	1969.1096	0.10955703	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	100.68	100.59	3	4.0156E-17	89124	160511_QHF_FH_JSI10i_2	164.93	6.7572			0.86282	0.9608	35.592	5	0	Median	2.0356	1.7235	NaN	1	0	Median	0.66928	0.83907	NaN	1	0	Median	0.76398	0.76303	NaN	1	0	Median	1.1059	1.1842	29.561	2	0	Median	646700000	339240000	307460000	76086000	32429000	43657000	97375000	63006000	34370000	154780000	99139000	55637000	318470000	144670000	173800000	31858	1421	30143	197294;197295;197296;197297;197298	266948;266949;266950;266951;266952;266953;266954;266955;266956	266954			9	
LLEPLVTQVTTLVNTSNK	1	Unmodified	1969.1096	0.10955703	1272	P26232	CTNNA2	Catenin alpha-2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			100.53	100.51	3	0.00022366	91201	160511_QHF_FH_JSI10i_1	65.423	1.4245			1.0893	1.2108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0893	1.2108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18965000	11339000	7626200	0	0	0	18965000	11339000	7626200	0	0	0	0	0	0	31859	1272	30144	197299	266957	266957			1	
LLEPVDHGK	1	Unmodified	1006.5447	0.54474515	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			17.523	16.812	2	0.055831	14211	160511_QHF_FH_JSI10i_2	43.083	9.2863			0.62114	0.76163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62114	0.76163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72257000	36236000	36021000	0	0	0	72257000	36236000	36021000	0	0	0	0	0	0	31860	3216	30145	197300	266958	266958			1	
LLEPVLLLGK	1	Unmodified	1093.7111	0.71108219	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	6.13	2	12	9					1	8	8	7	9	8	89.374	85.684	2	6.6064E-09	79763	160511_QHF_FH_JSI9i_2	124.98	72.3			0.84973	0.7993	16.162	13	12	Median	0.85948	0.71675	10.549	3	3	Median	0.66324	0.76469	20.327	3	2	Median	0.89644	0.86134	19.86	4	4	Median	0.75676	0.7993	18.288	3	3	Median	12501000000	5661700000	6839100000	2417500000	992260000	1425300000	2651900000	1400100000	1251800000	4488600000	1760200000	2728400000	2942800000	1509100000	1433700000	31861	1987	30146	197301;197302;197303;197304;197305;197306;197307;197308;197309;197310;197311;197312;197313;197314;197315;197316;197317;197318;197319;197320;197321;197322;197323;197324;197325;197326;197327;197328;197329;197330;197331;197332	266959;266960;266961;266962;266963;266964;266965;266966;266967;266968;266969;266970;266971;266972;266973;266974;266975;266976;266977;266978;266979;266980;266981;266982;266983;266984;266985;266986;266987;266988;266989;266990;266991;266992;266993;266994;266995;266996;266997;266998;266999	266980			41	
LLEPVLLLGKER	1	Unmodified	1378.8548	0.85478632	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			77.956	76.557	3	0.016562	64161	160511_QHF_FH_JSI10i_3	43.991	35.262			0.20461	0.23318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20461	0.23318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13888000	11586000	2302500	0	0	0	13888000	11586000	2302500	0	0	0	0	0	0	31862	1987	30147	197333	267000	267000			1	
LLEPVVSMSDMLR	0	Unmodified	1488.768	0.7680215	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.714	92.228	2	2.9659E-05	81075	160511_QHF_FH_JSI11i_2	118.4	88.93			1.0274	1.0188	10.004	4	0	Median	1.1224	0.97661	NaN	1	0	Median	0.73091	0.9064	NaN	1	0	Median	1.0366	1.0628	NaN	1	0	Median	1.0183	1.1408	NaN	1	0	Median	293500000	160870000	132630000	58000000	28826000	29174000	69391000	42657000	26733000	94534000	50583000	43951000	71574000	38807000	32767000	31863	507	30148	197334;197335;197336;197337	267001;267002;267003;267004;267005;267006;267007	267006			7	
LLEQALVIEEQLRR	0	Unmodified	1708.9836	0.98356866	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	75.536	75.393	3	0.0030693	65517	160511_QHF_FH_JSI12i_3	40.941	29.671			1.417	1.3605	117.31	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5882	1.4872	131.19	2	2	Median	1.0737	1.0763	151.75	2	1	Median	558320000	222990000	335330000	0	0	0	0	0	0	270490000	111740000	158760000	287830000	111260000	176570000	31864	2578;2318	30149	197338;197339;197340;197341	267008;267009;267010;267011	267011			4	
LLEQGLR	0	Unmodified	827.4865	0.48650199	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.31	3	2	1					3		1	3	2	3	27.585	23.923	2	0.0084796	20182	160511_QHF_FH_JSI12i_2	83.287	0			0.96738	1.0177	16.596	9	0	Median	1.2193	1.0177	NaN	1	0	Median	0.99698	1.178	3.9459	3	0	Median	1.0143	0.9944	7.6309	2	0	Median	0.88452	0.95973	19.992	3	0	Median	3319000000	1525500000	1793500000	1039300000	402180000	637160000	396900000	195220000	201680000	313160000	166730000	146430000	1569600000	761420000	808210000	31865	1650	30150	197342;197343;197344;197345;197346;197347;197348;197349;197350	267012;267013;267014;267015;267016;267017;267018;267019;267020	267012			9	
LLEQLQEIGQEK	1	Unmodified	1426.7668	0.76675917	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								3	1	2	3	58.601	57.782	2	2.3091E-06	52768	160511_QHF_FH_JSI12i_1	101.3	70.977			1.6502	1.6283	33.177	8	8	Median	1.6817	1.3783	42.443	3	3	Median	2.2322	2.6633	NaN	1	1	Median	1.7394	1.7043	20.683	2	2	Median	1.4335	1.5545	20.788	2	2	Median	272460000	105240000	167220000	93652000	38096000	55556000	44340000	17206000	27133000	71468000	27901000	43567000	62998000	22035000	40963000	31866	2841	30151	197351;197352;197353;197354;197355;197356;197357;197358;197359	267021;267022;267023;267024;267025;267026;267027;267028;267029	267024			9	
LLEQTQIIGEQNAR	0	Unmodified	1611.858	0.8580338	5030	Q9NVF7	FBXO28	F-box only protein 28	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.097	66.801	3	0.056071	57502	160511_QHF_FH_JSI12i_3	18.413	8.2911			23.869	24.267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23.869	24.267	NaN	1	1	Median	236290000	11059000	225230000	0	0	0	0	0	0	0	0	0	236290000	11059000	225230000	31867	5030	30152	197360	267030;267031	267030			2	
LLEQWEK	1	Unmodified	944.49673	0.49673232	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	38.184	36.829	2	0.0078699	31211	160511_QHF_FH_JSI12i_2	87.754	72.122			0.81461	0.90032	94.903	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81461	0.90032	94.903	2	2	Median	401640000	220680000	180960000	0	0	0	0	0	0	0	0	0	401640000	220680000	180960000	31868	2568	30153	197361;197362	267032;267033	267032			2	
LLEQYKEESK	2	Unmodified	1265.6503	0.65033243	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	18.015	17.565	3	0.0018313	14360	160511_QHF_FH_JSI12i_2	63.408	44.663			1.736	1.7515	60.514	7	7	Median	1.736	1.4703	NaN	1	1	Median	1.816	2.168	NaN	1	1	Median	0.82972	0.84046	95.942	3	3	Plateau	1.5445	1.6411	9.2073	2	2	Median	430540000	203240000	227300000	49564000	20176000	29388000	49548000	24512000	25037000	176590000	90668000	85919000	154840000	67885000	86957000	31869	2161	30154	197363;197364;197365;197366;197367;197368;197369	267034;267035;267036;267037;267038;267039;267040	267035			7	
LLERLPEVEVPQHL	0	Unmodified	1670.9356	0.93555583	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.38	75.773	3	7.2249E-05	67377	160511_QHF_FH_JSI10i_2	77.912	59.499			1.1167	1.1286	16.065	6	1	Median	1.272	1.0651	NaN	1	0	Median	0.98272	1.2168	NaN	1	0	Median	1.2359	1.2062	12.941	2	0	Median	0.92758	0.97814	23.788	2	1	Median	642420000	304790000	337630000	62326000	29307000	33019000	79100000	39754000	39346000	222210000	95256000	126950000	278790000	140470000	138320000	31870	2195	30155	197370;197371;197372;197373;197374;197375	267041;267042;267043;267044;267045;267046;267047;267048;267049;267050	267047			10	
LLERVPIPVK	1	Unmodified	1162.7438	0.74377931	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	53.407	53.289	3	0.0030288	47126	160511_QHF_FH_JSI11i_3	51.927	37.72			0.94171	0.91208	30.023	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2172	1.1278	NaN	1	1	Median	0.72859	0.73763	NaN	1	1	Median	124880000	48615000	76269000	0	0	0	0	0	0	89808000	30032000	59776000	35076000	18583000	16493000	31871	552	30156	197376;197377;197378	267051;267052;267053	267052			3	
LLESDYFR	0	Unmodified	1041.5131	0.51311067	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		50.589	49.747	2	0.0091869	42856	160511_QHF_FH_JSI11i_2	56.27	35.571			1.1164	1.2173	11.215	3	0	Plateau	1.1164	0.98232	NaN	1	0	Median	0.87897	1.0808	NaN	1	0	Median	1.2149	1.2284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	641960000	293030000	348930000	128890000	55038000	73854000	205990000	109370000	96616000	307080000	128630000	178460000	0	0	0	31872	4109	30157	197379;197380;197381	267054;267055;267056	267054			3	
LLESEAVNENLRK	1	Unmodified	1513.81	0.81002097	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	35.082	35.018	3	0.0091811	29835	160511_QHF_FH_JSI12i_3	45.79	34.936			0.64461	0.62753	1.6462	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65748	0.62026	NaN	1	1	Median	0.63199	0.63487	NaN	1	1	Median	212590000	134370000	78218000	0	0	0	0	0	0	106090000	64280000	41807000	106500000	70089000	36411000	31873	3276	30158	197382;197383	267057;267058;267059	267059			3	
LLESGDLSMSSIK	1	Unmodified	1378.7014	0.70138172	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	61.426	60.558	2	0.0074779	52895	160511_QHF_FH_JSI11i_2	49.777	32.378			1.0228	1.0109	5.2466	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74227	0.91803	NaN	1	0	Median	1.0228	1.0109	NaN	1	1	Median	0.92789	0.99862	NaN	1	0	Median	163540000	87543000	75998000	0	0	0	28478000	17084000	11394000	103380000	53483000	49894000	31685000	16976000	14709000	31874	179	30159	197384;197385;197386;197387	267060;267061;267062	267062			3	
LLESIFHR	0	Unmodified	1013.5658	0.56581494	3293	Q7Z7E8	UBE2Q1	Ubiquitin-conjugating enzyme E2 Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	48.831	48.085	3	0.0001071	42359	160511_QHF_FH_JSI11i_3	116.73	89.472			1.4409	1.1756	75.247	7	6	Median	1.4669	1.1756	NaN	1	0	Median	0.95403	1.0998	88.079	2	2	Median	0.76178	0.7162	89.008	2	2	Median	0.63188	0.63615	116.86	2	2	Median	536710000	267220000	269490000	95660000	33993000	61666000	142720000	66521000	76200000	180910000	99945000	80962000	117430000	66765000	50660000	31875	3293	30160	197388;197389;197390;197391;197392;197393;197394	267063;267064;267065;267066;267067;267068;267069;267070;267071	267064			9	
LLESLDQLELR	0	Unmodified	1327.7347	0.73473076	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	76.791	76.151	2	0.00031101	65629	160511_QHF_FH_JSI12i_2	89.609	56.384			1.0248	1.0161	18.729	6	5	Median	1.5027	1.3179	NaN	1	1	Median	0.7835	0.94043	8.3162	2	2	Median	1.0248	1.0033	4.4138	2	1	Median	1.2503	1.4286	NaN	1	1	Median	704450000	378240000	326210000	126140000	53255000	72889000	184450000	100950000	83502000	257450000	156910000	100530000	136410000	67123000	69286000	31876	731	30161	197395;197396;197397;197398;197399;197400	267072;267073;267074;267075;267076;267077;267078	267073			7	
LLESLDQLELRVEALR	0	Unmodified	1896.068	0.068026571	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.55	97.57	3	0.0032522	84446	160511_QHF_FH_JSI12i_3	46.964	31.809			0.78259	0.79246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78259	0.79246	NaN	1	0	Median	36549000	21335000	15214000	0	0	0	0	0	0	0	0	0	36549000	21335000	15214000	31877	731	30162	197401	267079;267080	267079			2	
LLESLQENHFQEDEQFLGAVMPR	0	Unmodified	2729.3119	0.31191502	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	95.916	95.755	3;4	3.8894E-11	84723	160511_QHF_FH_JSI10i_2	76.733	73.001			1.1168	1.0561	23.803	7	1	Median	1.2609	1.0561	NaN	1	0	Median	0.86949	1.0535	NaN	1	0	Median	1.1081	1.0676	18.685	2	0	Median	1.1168	1.1286	36	3	1	Median	569980000	262000000	307970000	64341000	30552000	33789000	75652000	38561000	37090000	215580000	90946000	124640000	214400000	101950000	112460000	31878	1691	30163	197402;197403;197404;197405;197406;197407;197408	267081;267082;267083;267084;267085	267083			3	
LLESMIPIK	1	Unmodified	1042.6097	0.60965359	4593	Q9GZM5	YIPF3	Protein YIPF3;Protein YIPF3, 36 kDa form III	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.926	69.035	2	0.00050337	60289	160511_QHF_FH_JSI11i_2	79.474	40.682			0.84187	0.94156	11.994	4	0	Median	1.1901	1.0265	NaN	1	0	Median	0.85126	1.05	NaN	1	0	Median	0.83258	0.82826	NaN	1	0	Median	0.78908	0.86364	NaN	1	0	Median	239800000	123510000	116300000	43218000	18639000	24579000	47279000	22820000	24459000	87148000	50249000	36900000	62156000	31798000	30358000	31879	4593	30164	197409;197410;197411;197412	267086;267087;267088;267089;267090	267089			5	
LLESPGVEAGEGEAEK	1	Unmodified	1613.7784	0.77844607	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.057	38.435	2	4.1621E-07	34841	160511_QHF_FH_JSI12i_1	133.32	98.789			0.86627	0.95514	13.312	4	0	Linear	0.88593	0.75508	NaN	1	0	Median	0.68037	0.79625	NaN	1	0	Median	1.0466	1.0161	NaN	1	0	Median	0.84705	0.90425	NaN	1	0	Median	348340000	166650000	181680000	65681000	34851000	30830000	91002000	51278000	39725000	98706000	35804000	62902000	92948000	44722000	48226000	31880	3083	30165	197413;197414;197415;197416	267091;267092;267093;267094;267095	267092			5	
LLESSLSSSEGEEPVEYK	1	Unmodified	1981.9368	0.93679721	911	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		54.618	54.206	2	3.9896E-06	49121	160511_QHF_FH_JSI11i_1	105	80.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17930000	17930000	0	0	0	0	0	0	0	17930000	17930000	0	0	0	0	31881	911	30166	197417	267096	267096			1	
LLESWLTLVQDDK	1	Unmodified	1558.8243	0.82427405	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	98.389	98.13	2	0.00052091	84352	160511_QHF_FH_JSI12i_2	89.548	73.294			0.88618	0.93154	12.556	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87507	0.8524	NaN	1	1	Median	0.89743	1.018	NaN	1	1	Median	19528000	10221000	9307000	0	0	0	0	0	0	9839000	6187600	3651300	9688900	4033200	5655700	31882	4586	30167	197418;197419	267097;267098	267097			2	
LLETERK	1	Unmodified	887.50763	0.50763136	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	7.6929	7.7417	2;3	0.013681	5193	160511_QHF_FH_JSI12i_3	41.652	0			0.70223	0.67775	18.601	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87931	0.82382	15.229	2	0	Median	0.61117	0.62021	0.17309	2	0	Median	496490000	298930000	197570000	0	0	0	0	0	0	222420000	131380000	91045000	274070000	167550000	106520000	31883	2787	30168	197420;197421;197422;197423	267099;267100;267101;267102	267102			4	
LLETGLVNMHR	0	Unmodified	1281.6863	0.68634078	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		46.988	46.205	3	7.4157E-06	38593	160511_QHF_FH_JSI10i_3	89.317	86.905			1.3239	1.393	17.404	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3479	1.5755	NaN	1	0	Median	1.3004	1.2317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	127300000	58863000	68435000	0	0	0	43390000	19021000	24369000	83908000	39842000	44066000	0	0	0	31884	3262	30169	197424;197425	267103;267104	267103			2	
LLETHIHNQGLAAIEK	1	Unmodified	1785.9737	0.97373226	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	45.225	45.064	2;3	1.0299E-11	39765	160511_QHF_FH_JSI11i_3	113.65	82.218			0.87541	0.8711	1.0546	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89759	0.86463	NaN	1	0	Median	0.85377	0.87762	NaN	1	1	Median	466320000	202190000	264130000	0	0	0	0	0	0	175940000	78079000	97860000	290380000	124110000	166270000	31885	2453	30170	197426;197427;197428;197429	267105;267106;267107;267108;267109;267110	267107			6	
LLETIDQLYLEYAK	1	Unmodified	1710.908	0.90800368	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	100.64	100.51	2	3.1898E-17	88159	160511_QHF_FH_JSI11i_2	210.91	157.23			0.65032	0.69695	155.43	5	5	Median	0.12022	0.10147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.5566	3.4008	110.15	3	3	Median	0.65032	0.69695	NaN	1	1	Median	299140000	165530000	133610000	53162000	48432000	4730500	27488000	27488000	0	136370000	36749000	99620000	82120000	52864000	29256000	31886	1021	30171	197430;197431;197432;197433;197434;197435	267111;267112;267113;267114;267115;267116	267114			6	
LLETIHWR	0	Unmodified	1066.5924	0.59236404	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.8	0.4		1	4							1	2	1	1	49.282	48.408	3	0.00050667	41223	160511_QHF_FH_JSI12i_3	82.279	61.28			0.87224	0.77218	25.223	5	1	Median	0.92191	0.77218	NaN	1	0	Median	0.43397	0.51686	3.2673	2	1	Median	0.87224	0.7988	NaN	1	0	Median	0.8733	0.87025	NaN	1	0	Median	157030000	82841000	74194000	14911000	7478900	7432500	33724000	24589000	9134500	47149000	21592000	25557000	61251000	29181000	32070000	31887	2515	30172	197436;197437;197438;197439;197440	267117;267118;267119;267120;267121	267121			5	
LLETKPEFLK	2	Unmodified	1216.7067	0.7067251	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	48.873	48.622	3	0.00036772	41558	160511_QHF_FH_JSI12i_3	78.655	51.982			1.1409	1.146	48.369	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1409	1.146	11.235	2	1	Median	1.1233	1.1278	83.005	2	2	Median	271900000	116660000	155240000	0	0	0	0	0	0	101380000	44879000	56502000	170520000	71784000	98737000	31888	4974	30173	197441;197442;197443;197444	267122;267123;267124;267125	267124			4	
LLETLFVHR	0	Unmodified	1126.6499	0.64987892	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6.27		6	7						6	5	4	5	5	60.235	56.877	2;3	1.1304E-17	31331	160513_QHF_FH_JSI10Kac_6	171.99	134.8			0.89672	0.84605	90.862	19	12	Median	1.3298	1.1409	45.333	5	3	Median	0.75496	0.86654	56.811	4	2	Median	0.66233	0.60792	138.85	5	3	Median	0.78607	0.80037	89.847	5	4	Median	2211600000	1476900000	734670000	285900000	152310000	133590000	356330000	199460000	156870000	646220000	499500000	146720000	923140000	625650000	297490000	31889	5141	30174	197445;197446;197447;197448;197449;197450;197451;197452;197453;197454;197455;197456;197457;197458;197459;197460;197461;197462;197463	267126;267127;267128;267129;267130;267131;267132;267133;267134;267135;267136;267137;267138;267139;267140;267141;267142;267143;267144;267145;267146;267147;267148;267149	267149			24	
LLETQDGAEK	1	Unmodified	1102.5506	0.55061839	3604	Q8NBT2	SPC24	Kinetochore protein Spc24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.343	14.885	2	1.3279E-05	12452	160511_QHF_FH_JSI10i_1	102.07	68.517			1.3465	1.3353	17.911	4	0	Median	1.3357	1.0945	NaN	1	0	Median	1.3574	1.5949	NaN	1	0	Median	1.5172	1.494	NaN	1	0	Median	1.1434	1.1934	NaN	1	0	Median	437300000	182080000	255220000	92461000	36219000	56242000	114020000	50176000	63840000	110750000	47942000	62809000	120070000	47737000	72332000	31890	3604	30175	197464;197465;197466;197467	267150;267151;267152;267153;267154;267155;267156	267155			7	
LLETTDRPDGHQNNLR	0	Unmodified	1877.9344	0.93438664	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.48		6	9						4	5	6	5	3	23.685	21.314	2;3;4	2.5517E-52	17965	160511_QHF_FH_JSI11i_3	203.11	179.98			0.93987	0.963	22.033	19	1	Median	1.5161	1.2677	23.363	5	1	Median	0.87573	1.0163	20.534	6	0	Median	0.95406	0.91177	12.757	5	0	Median	0.80857	0.83082	7.0748	3	0	Plateau	4160300000	2027800000	2132500000	944610000	405390000	539220000	1738800000	834110000	904730000	1068900000	542140000	526780000	407970000	246160000	161810000	31891	2585	30176	197468;197469;197470;197471;197472;197473;197474;197475;197476;197477;197478;197479;197480;197481;197482;197483;197484;197485;197486	267157;267158;267159;267160;267161;267162;267163;267164;267165;267166;267167;267168;267169;267170;267171;267172;267173;267174;267175;267176;267177;267178;267179;267180;267181;267182;267183;267184;267185;267186;267187;267188	267160			32	
LLETTEEDK	1	Unmodified	1076.5237	0.52373493	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	19.307	16.545	2	0.00014605	13985	160511_QHF_FH_JSI9i_1	89.698	46.574			0.95457	0.96794	11.181	6	0	Median	1.0211	0.85453	NaN	1	0	Median	0.95299	1.1333	NaN	1	0	Median	1.0207	0.98639	12.567	2	0	Median	0.8927	0.96794	8.0158	2	0	Median	1522900000	851880000	671000000	348420000	180930000	167490000	417750000	239880000	177860000	340500000	188200000	152300000	416220000	242870000	173350000	31892	3217	30177	197487;197488;197489;197490;197491;197492	267189;267190;267191;267192;267193;267194;267195;267196	267195			8	
LLEVEHPAAK	1	Unmodified	1105.6132	0.61315906	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	5.9		8	9				1	5	2	4	7	6	8	25.847	22.421	2;3	1.2297E-10	19290	160511_QHF_FH_JSI10i_2	141.2	88.029			0.93965	0.963	30.312	25	2	Median	1.4929	1.2507	10.248	4	0	Median	0.65727	0.81299	44.938	7	0	Median	0.99248	0.99144	8.6869	6	0	Median	0.87186	0.92065	21.255	8	2	Median	8576500000	4044500000	4531900000	1934800000	803300000	1131500000	2069800000	1079200000	990530000	2495300000	1153900000	1341400000	2076600000	1008100000	1068500000	31893	1132	30178	197493;197494;197495;197496;197497;197498;197499;197500;197501;197502;197503;197504;197505;197506;197507;197508;197509;197510;197511;197512;197513;197514;197515;197516;197517	267197;267198;267199;267200;267201;267202;267203;267204;267205;267206;267207;267208;267209;267210;267211;267212;267213;267214;267215;267216;267217;267218;267219;267220;267221;267222;267223;267224;267225;267226;267227;267228;267229;267230;267231;267232;267233;267234	267229			38	
LLEVIILQCK	1	Unmodified	1227.7261	0.72608033	686;287	O95373;O15397	IPO7;IPO8	Importin-7;Importin-8	no	no	0	0	0	0		By MS/MS		By MS/MS	11.3	6.6		1							2		2		1	80.492	74.896	2	4.2754E-10	41134	160513_QHF_FH_JSI10Kac_6	134.91	73.937			1.1946	1.4016	81.658	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1946	1.4016	81.658	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193850000	76501000	117350000	0	0	0	193850000	76501000	117350000	0	0	0	0	0	0	31894	686;287	30179	197518;197519;197520	267235;267236;267237	267237			3	
LLEVLSGER	0	Unmodified	1014.571	0.5709599	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.08	46.567	2	0.060329	40031	160511_QHF_FH_JSI11i_2	42.19	10.256			2.0301	2.0854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0301	2.0854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57977000	20903000	37074000	0	0	0	0	0	0	57977000	20903000	37074000	0	0	0	31895	2162	30180	197521	267238	267238			1	
LLEVNGVALQGAEHHEAVEALR	0	Unmodified	2354.2343	0.23425705	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.032	62.889	4	6.9053E-06	54379	160511_QHF_FH_JSI12i_3	61.963	58.159			1.096	1.0726	6.3448	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0826	1.0256	NaN	1	0	Median	1.1095	1.1218	NaN	1	0	Median	141910000	71782000	70126000	0	0	0	0	0	0	56996000	27538000	29458000	84911000	44243000	40668000	31896	2506	30181	197522;197523	267239;267240;267241	267241			3	
LLEVNQQSLLGLTHGEAVQLLR	0	Unmodified	2430.3595	0.35945756	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	100.84	100.78	3	1.2086E-37	89817	160511_QHF_FH_JSI11i_3	195.56	175.66			1.1314	1.1	14.224	5	0	Median	1.2925	1.1	NaN	1	0	Median	0.76313	0.93317	NaN	1	0	Median	1.0147	0.99604	22.86	2	0	Median	1.1314	1.1512	NaN	1	0	Median	924540000	476090000	448450000	83645000	40556000	43089000	136800000	73786000	63011000	293880000	147140000	146740000	410230000	214620000	195610000	31897	2506	30182	197524;197525;197526;197527;197528	267242;267243;267244;267245	267242			4	
LLEVQGSRPGK	1	Unmodified	1182.6721	0.67207093	1980	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	7						3	4	5	4	1	21.311	18.959	2;3	1.025E-06	15997	160511_QHF_FH_JSI11i_3	125.56	67.965			0.93879	0.90884	16.892	14	2	Median	1.1442	0.95587	23.289	4	0	Median	0.65451	0.75746	20.338	5	1	Median	0.93879	0.90884	5.2761	4	0	Median	0.9987	0.98531	NaN	1	1	Median	3460200000	1864400000	1595800000	1186300000	599870000	586400000	965690000	624250000	341440000	1091100000	552480000	538660000	217150000	87814000	129340000	31898	1980	30183	197529;197530;197531;197532;197533;197534;197535;197536;197537;197538;197539;197540;197541;197542	267246;267247;267248;267249;267250;267251;267252;267253;267254;267255;267256;267257;267258;267259	267247			14	
LLEVYDQLFK	1	Unmodified	1266.686	0.68598966	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.707	1	2	1							1	2	1		86.333	85.571	2	1.2463E-05	76143	160511_QHF_FH_JSI10i_2	113.66	99.655			1.6116	1.8526	91.488	3	3	Plateau	1.4585	1.267	NaN	1	1	Median	0.6873	0.81982	124.41	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174180000	86952000	87227000	77983000	41191000	36792000	96196000	45761000	50435000	0	0	0	0	0	0	31899	558	30184	197543;197544;197545;197546	267260;267261;267262;267263	267263			4	
LLEYDTVTR	0	Unmodified	1108.5764	0.57643921	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				62.188	61.229	2	0.024198	53948	160511_QHF_FH_JSI9i_2	49.358	35.201			0.21595	0.17949	NaN	1	1	Median	0.21595	0.17949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1719400000	1450500000	268850000	1719400000	1450500000	268850000	0	0	0	0	0	0	0	0	0	31900	4877	30185	197547	267264	267264			1	
LLEYMPLPPEEAENGENAGNEEPK	1	Unmodified	2669.2167	0.21667724	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		75.82	75.498	3	0.0031996	68681	160511_QHF_FH_JSI11i_1	39.893	31.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31901	4575	30186	197548	267265	267265			1	
LLFDQFMK	1	Unmodified	1040.5365	0.53648865	2937	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.105	82.01	2	0.0032965	70915	160511_QHF_FH_JSI12i_2	73.616	64.844			1.0175	1.1097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0175	1.1097	NaN	1	0	Median	45390000	23213000	22177000	0	0	0	0	0	0	0	0	0	45390000	23213000	22177000	31902	2937	30187	197549	267266	267266			1	
LLFEGAGSNPGDK	1	Unmodified	1303.6408	0.64083038	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	2	3	3	44.713	43.961	2	4.0277E-10	37679	160511_QHF_FH_JSI12i_2	143.24	115.03			0.90595	0.9047	26.89	11	8	Median	0.90595	0.76428	29.959	3	2	Median	0.69682	0.81474	35.8	2	2	Median	0.9617	0.93678	26.671	3	2	Median	0.81774	0.9047	35.796	3	2	Median	1123100000	613710000	509410000	203810000	106830000	96985000	248540000	140610000	107930000	401630000	220310000	181320000	269140000	145960000	123180000	31903	1954	30188	197550;197551;197552;197553;197554;197555;197556;197557;197558;197559;197560	267267;267268;267269;267270;267271;267272;267273;267274;267275;267276;267277;267278;267279	267270			13	
LLFEYLTLFGIADK	1	Unmodified	1641.9018	0.90179609	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.604	92.883	2	1.2819E-15	54360	160513_QHF_FH_JSI10Kac_6	140.24	88.799			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31904	1666	30189	197561	267280	267280			1	
LLFEYLTLFGIDDK	1	Unmodified	1685.8916	0.89162533	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	3	1	2	2	100.33	95.473	2;3	9.0044E-38	51301	160513_QHF_FH_JSI9Kac_6	188.06	105.31			0.76396	0.82448	19.306	7	3	Median	0.7329	0.64013	8.3143	2	1	Median	0.76396	0.89516	NaN	1	0	Median	0.85974	0.848	31.153	2	2	Median	0.7775	0.833	1.455	2	0	Median	1008500000	558770000	449750000	319400000	175270000	144130000	238390000	121270000	117120000	121300000	64684000	56617000	329440000	197540000	131890000	31905	1012	30190	197562;197563;197564;197565;197566;197567;197568;197569	267281;267282;267283;267284;267285;267286;267287;267288;267289;267290;267291	267284			11	
LLFFWSDR	0	Unmodified	1082.5549	0.5549159	4609	Q9GZT9;Q9H6Z9	EGLN1;EGLN3	Egl nine homolog 1;Egl nine homolog 3	yes	no	0	0	0	0		By MS/MS			16	0									1		1			86.245	80.544	2	1.2094E-05	45295	160513_QHF_FH_JSI10Kac_6	132.29	93.493			0.94752	1.1128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94752	1.1128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233570000	106410000	127160000	0	0	0	233570000	106410000	127160000	0	0	0	0	0	0	31906	4609	30191	197570	267292	267292			1	
LLFFWSDRR	0	Unmodified	1238.656	0.65602693	4609	Q9GZT9;Q9H6Z9	EGLN1;EGLN3	Egl nine homolog 1;Egl nine homolog 3	yes	no	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			78.666	71.958	3	2.7098E-05	38286	160513_QHF_FH_JSI9Kac_6	106.6	85.227			1.1905	1.0469	44.092	3	2	Plateau	1.1905	1.0469	NaN	1	0	Median	0.72616	0.85653	60.165	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96127000	45841000	50286000	28954000	16782000	12172000	67173000	29059000	38114000	0	0	0	0	0	0	31907	4609	30192	197571;197572;197573	267293;267294;267295;267296	267293			4	
LLFGIAQPQLPPK	1	Unmodified	1420.8442	0.84422163	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		84.26	84.26	3	0.003073	75233	160511_QHF_FH_JSI11i_3	53.569	50.247			1.4481	1.3939	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4481	1.3939	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5519100	2092700	3426400	0	0	0	0	0	0	5519100	2092700	3426400	0	0	0	31908	4234	30193	197574	267297	267297			1	
LLFGPTVR	0	Unmodified	901.53854	0.53853756	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	55.096	54.258	2	0.00098846	46452	160511_QHF_FH_JSI12i_3	105.39	44.385			1.0079	0.98024	6.3092	4	0	Median	1.3137	1.0778	NaN	1	0	Median	0.79149	0.9289	NaN	1	0	Median	1.0042	0.96545	NaN	1	0	Median	1.0116	0.99526	NaN	1	0	Median	889690000	428370000	461320000	290300000	137580000	152710000	204330000	102750000	101580000	177120000	87925000	89195000	217940000	100110000	117830000	31909	5566	30194	197575;197576;197577;197578	267298;267299;267300;267301;267302;267303;267304;267305	267305			8	
LLFGSGLPPALF	0	Unmodified	1230.7012	0.70124579	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	3	2	1	103.05	102.97	2	5.7719E-08	90808	160511_QHF_FH_JSI9i_2	138.9	130.03			0.80582	0.95286	26.94	7	1	Median	1.1521	0.98162	NaN	1	0	Median	0.73328	0.90316	10.31	3	0	Median	0.77316	0.77084	57.818	2	1	Median	0.93844	1.0548	NaN	1	0	Median	367680000	177580000	190100000	60200000	29243000	30956000	92848000	48661000	44186000	98933000	46695000	52238000	115700000	52984000	62718000	31910	3950	30195	197579;197580;197581;197582;197583;197584;197585	267306;267307;267308;267309;267310;267311;267312;267313;267314	267311			9	
LLFIFLLGHDIDFGHMEAVNLLSSNK	1	Unmodified	2942.5364	0.53643565	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.414	89.28	4	4.9064E-53	51304	160513_QHF_FH_JSI9Kac_6	175.71	157.15			0.59435	0.49783	NaN	1	0	Median	0.59435	0.49783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136910000	68600000	68313000	136910000	68600000	68313000	0	0	0	0	0	0	0	0	0	31911	726	30196	197586	267315	267315			1	
LLFLLSLLHTDIR	0	Unmodified	1552.9341	0.93409927	5040	Q9NVN3	RIC8B	Synembryn-B	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	97.235	87.792	3	0.006159	48044	160513_QHF_FH_JSI12Kac_6	50.155	37.795			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28307000	0	28307000	0	0	0	0	0	0	0	0	0	28307000	0	28307000	31912	5040	30197	197587	267316	267316			1	
LLFLLTALR	0	Unmodified	1058.6852	0.68520179	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	94.095	84.918	2	7.4637E-12	46025	160513_QHF_FH_JSI12Kac_6	161.68	108.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	636270000	163920000	472350000	328730000	163920000	164810000	0	0	0	185580000	0	185580000	121960000	0	121960000	31913	4908	30198	197588;197589;197590;197591	267317;267318;267319;267320	267320			4	
LLFLSMHWAR	0	Unmodified	1272.6801	0.68013319	1642	P49116	NR2C2	Nuclear receptor subfamily 2 group C member 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.803	76.21	3	0.00014465	42031	160513_QHF_FH_JSI10Kac_6	73.887	56.944			0.47739	0.56219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47739	0.56219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28817000	16954000	11863000	0	0	0	28817000	16954000	11863000	0	0	0	0	0	0	31914	1642	30199	197592	267321	267321			1	
LLFNAGNIANHFFTVPFLR	0	Unmodified	2190.1738	0.17382905	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	4	2	2	96.333	88.353	2;3	5.9819E-199	49682	160513_QHF_FH_JSI9Kac_6	360.97	322.95			1.0305	0.98605	20.489	11	6	Median	1.1384	0.98605	3.1636	3	2	Median	0.7758	0.89559	36.901	4	4	Median	1.075	1.0373	4.3153	2	0	Median	0.94265	0.98354	4.7957	2	0	Median	19876000000	10202000000	9674300000	4102000000	1810100000	2291900000	10267000000	5755800000	4510800000	2839000000	1378000000	1461100000	2668600000	1258100000	1410500000	31915	2728	30200	197593;197594;197595;197596;197597;197598;197599;197600;197601;197602;197603	267322;267323;267324;267325;267326;267327;267328;267329;267330	267323			9	
LLFNDVQTLK	1	Unmodified	1189.6707	0.67067394	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.001	65.439	2	0.0014293	57013	160511_QHF_FH_JSI11i_2	77.192	46.505			3.1495	3.2335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1495	3.2335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97114000	29613000	67501000	0	0	0	0	0	0	97114000	29613000	67501000	0	0	0	31916	2636	30201	197604	267331	267331			1	
LLFNMAGVTFR	0	Unmodified	1267.6747	0.67471346	1393	P32321	DCTD	Deoxycytidylate deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		85.521	77.654	2	0.0014282	44087	160513_QHF_FH_JSI10Kac_6	81.338	49.017			0.97122	0.8424	23.378	3	1	Median	0.98538	0.8424	NaN	1	0	Median	0.97122	1.1104	NaN	1	1	Median	0.75956	0.69762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203920000	117300000	86618000	61912000	33942000	27970000	83351000	42331000	41020000	58653000	41025000	17628000	0	0	0	31917	1393	30202	197605;197606;197607	267332;267333;267334	267334			2	
LLFNMAGVTFRK	1	Unmodified	1395.7697	0.76967648	1393	P32321	DCTD	Deoxycytidylate deaminase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			77.695	71.629	3	0.0050742	39137	160513_QHF_FH_JSI10Kac_6	43.03	22.567			1.3727	1.634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3727	1.634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33317000	14039000	19278000	0	0	0	33317000	14039000	19278000	0	0	0	0	0	0	31918	1393	30203	197608	267335	267335			1	
LLFPAVDDNLLK	1	Unmodified	1356.7653	0.76530261	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		95.874	95.571	2	3.6542E-06	84774	160511_QHF_FH_JSI10i_2	100.48	68.157			1.1462	1.0993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1462	1.0993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11427000	4760800	6666700	0	0	0	0	0	0	11427000	4760800	6666700	0	0	0	31919	2197	30204	197609;197610;197611	267336;267337;267338	267338			3	
LLFQLAQLHTLEK	1	Unmodified	1552.8977	0.89771377	5752	Q9Y6X3	MAU2	MAU2 chromatid cohesion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			3						3	2	3	1		82.469	78.75	3	1.2131E-07	73563	160511_QHF_FH_JSI11i_3	118.24	90.83			0.71442	0.70722	44.314	6	3	Median	0.64019	0.53562	32.078	2	1	Median	0.6298	0.70731	27.68	3	2	Median	1.6171	1.5063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	655250000	379330000	275920000	241150000	142220000	98928000	312600000	192160000	120440000	101490000	44945000	56550000	0	0	0	31920	5752	30205	197612;197613;197614;197615;197616;197617	267339;267340;267341;267342;267343	267339			5	
LLFQNLWK	1	Unmodified	1060.607	0.60695147	431	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	85.385	84.743	2	0.00014947	73443	160511_QHF_FH_JSI12i_3	124.89	110.89			0.90035	0.90737	16.826	4	0	Median	1.1216	0.91259	NaN	1	0	Median	0.91288	1.1103	NaN	1	0	Median	0.78887	0.73541	NaN	1	0	Median	0.88799	0.90217	NaN	1	0	Median	440590000	219620000	220970000	80605000	33484000	47121000	80847000	38775000	42073000	100990000	50902000	50090000	178150000	96459000	81690000	31921	431	30206	197618;197619;197620;197621	267344;267345;267346	267346			3	
LLFSATLTQNPEK	1	Unmodified	1460.7875	0.78749461	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.937	65.643	2	8.2023E-07	56722	160511_QHF_FH_JSI12i_3	156.48	115.03			1.163	1.1744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.163	1.1744	NaN	1	0	Median	36430000	13249000	23181000	0	0	0	0	0	0	0	0	0	36430000	13249000	23181000	31922	3566	30207	197622	267347;267348	267347			2	
LLFSFLTLITK	1	Unmodified	1294.7901	0.7900608	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	2	1	100.73	96.012	2	9.8708E-20	51137	160513_QHF_FH_JSI11Kac_6	163.64	117.21			0.88537	0.8193	21.399	6	0	Median	0.78469	0.66883	20.718	2	0	Median	0.86848	1.0136	NaN	1	0	Median	0.85586	0.81338	9.0056	2	0	Median	0.96872	1.025	NaN	1	0	Median	2158000000	1135800000	1022200000	601810000	357840000	243970000	32943000	17431000	15511000	1108100000	556320000	551740000	415190000	204200000	210990000	31923	557	30208	197623;197624;197625;197626;197627;197628	267349;267350;267351;267352;267353	267352			5	
LLFSGYQHHLSVR	0	Unmodified	1555.8259	0.82594581	5077	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	3	3	2	57.23	47.786	3;4	4.1922E-17	25005	160513_QHF_FH_JSI12Kac_6	133.71	114.98			1.0592	1.064	41.695	9	5	Median	1.5269	1.3033	12.601	3	2	Median	0.48943	0.57748	NaN	1	0	Median	1.0592	1.064	11.636	3	2	Median	0.51377	0.55701	50.317	2	1	Median	368540000	215630000	152910000	137320000	65601000	71716000	133800000	97860000	35939000	62974000	31437000	31537000	34449000	20736000	13713000	31924	5077	30209	197629;197630;197631;197632;197633;197634;197635;197636;197637;197638;197639	267354;267355;267356;267357;267358;267359;267360;267361;267362;267363;267364;267365;267366;267367;267368	267364			15	
LLFSHDLVSGR	0	Unmodified	1242.6721	0.67207093	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	53.625	52.905	2;3	0.00035599	43467	160511_QHF_FH_JSI9i_3	63.091	46.459			0.86042	0.91614	25.205	5	3	Median	1.1136	0.91614	NaN	1	0	Median	0.86042	1.0014	NaN	1	0	Median	0.58733	0.54623	NaN	1	1	Median	0.89036	0.90725	13.657	2	2	Median	590960000	338320000	252640000	118470000	64116000	54354000	98002000	56850000	41152000	102450000	63064000	39390000	272040000	154290000	117750000	31925	4582	30210	197640;197641;197642;197643;197644	267369;267370;267371;267372;267373	267371			4	
LLFSNTAAQK	1	Unmodified	1091.5975	0.597509	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	38.066	37.344	2	3.5012E-05	32917	160511_QHF_FH_JSI10i_2	105.57	56.209			0.9008	0.97945	40.848	9	7	Median	0.84743	0.75827	3.6766	2	2	Median	0.67379	0.81032	48.224	2	1	Median	1.3455	1.4328	36.331	3	3	Median	1.319	1.3798	48.468	2	1	Median	595620000	289810000	305820000	84167000	45092000	39075000	81570000	45484000	36086000	246620000	114810000	131810000	183270000	84423000	98845000	31926	4247	30211	197645;197646;197647;197648;197649;197650;197651;197652;197653;197654;197655	267374;267375;267376;267377;267378;267379;267380;267381;267382;267383;267384;267385	267383			12	
LLFSNTAAQKLR	1	Acetyl (K)	1402.7932	0.79324869	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	15.8	0.433								1	3	2	1		1	73.07	64.029	2	0.0012672	33508	160513_QHF_FH_JSI12Kac_6	81.09	53.265			1.4108	1.285	109.15	4	1	Median	1.4108	1.2107	10.474	2	0	Median	8.9767	10.864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2119	1.2666	NaN	1	0	Median	91609000	33747000	57863000	36832000	14499000	22333000	21501000	2035500	19466000	0	0	0	33276000	17212000	16064000	31927	4247	30212	197656;197657;197658;197659	267386;267387;267388	267387	3084		3	
LLFTMLEK	1	Unmodified	993.55689	0.55688974	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	2	3	2	3	78.34	75.964	2	0.0011491	68808	160511_QHF_FH_JSI11i_3	93.374	54.582			1.0948	1.0552	45.966	10	6	Median	1.2867	1.114	41.044	2	1	Median	0.53816	0.66867	71.508	3	3	Median	1.3445	1.2902	41.706	2	1	Median	1.1468	1.159	46.067	3	1	Median	717920000	385660000	332260000	88768000	47879000	40889000	175000000	99755000	75246000	206370000	106020000	100350000	247790000	132010000	115780000	31928	2605	30213	197660;197661;197662;197663;197664;197665;197666;197667;197668;197669	267389;267390;267391;267392;267393;267394;267395;267396;267397;267398;267399	267390			11	
LLFTPQHK	1	Unmodified	982.56	0.56000128	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	30.15	29.445	3	0.00072767	25142	160511_QHF_FH_JSI11i_3	75.213	60.062			1.2564	1.1154	69.245	4	3	Median	1.8523	1.5004	NaN	1	1	Median	0.32819	0.38578	NaN	1	1	Median	0.89375	0.82925	NaN	1	0	Median	1.7662	1.7877	NaN	1	1	Median	318790000	144850000	173940000	65004000	26182000	38822000	43869000	25964000	17905000	78339000	31057000	47282000	131580000	61650000	69932000	31929	4363	30214	197670;197671;197672;197673	267400;267401;267402;267403;267404	267400			5	
LLFTVLGEPLIYSLSFPER	0	Unmodified	2193.2085	0.2085428	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	1	2	100.88	96.023	2;3	1.0005E-56	54842	160513_QHF_FH_JSI10Kac_6	200.16	163.39			1.0043	1.0147	12.549	5	2	Median	1.2107	1.0417	NaN	1	1	Median	1.0043	1.208	NaN	1	0	Median	1.081	1.0147	NaN	1	1	Median	0.91236	0.90437	7.4577	2	0	Median	483520000	245040000	238470000	69507000	30785000	38722000	147760000	83384000	64376000	173830000	79515000	94311000	92425000	51360000	41065000	31930	4956	30215	197674;197675;197676;197677;197678	267405;267406;267407;267408;267409	267409			5	
LLFWGGSYGGAGQPQLISR	0	Unmodified	2006.0374	0.037395144	76	CON__Q3ZBS7			yes	yes	0	0	0	0		By MS/MS			16	0									2		2			85.91	80.209	2;3	2.9278E-07	44988	160513_QHF_FH_JSI10Kac_6	198.74	156.69		+	1.0077	1.1924	42.01	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0077	1.1924	42.01	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123160000	56378000	66786000	0	0	0	123160000	56378000	66786000	0	0	0	0	0	0	31931	76	30216	197679;197680	267410;267411	267411			2	
LLFWVTEV	0	Unmodified	1005.5535	0.55351892	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	102.68	102.57	2	0.0018952	90383	160511_QHF_FH_JSI11i_2	84.185	73.312			1.2219	1.3584	41.827	3	1	Median	NaN	NaN	NaN	0	0	Median	0.56083	0.69583	NaN	1	1	Median	1.4715	1.5021	NaN	1	0	Median	1.2219	1.3584	NaN	1	0	Median	156560000	70750000	85806000	0	0	0	30564000	19108000	11456000	62131000	23531000	38600000	63862000	28112000	35751000	31932	3657	30217	197681;197682;197683	267412;267413	267412			2	
LLFYATSR	0	Unmodified	969.52837	0.5283668	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	55.546	50.474	2	2.3531E-16	27757	160513_QHF_FH_JSI10Kac_6	169.37	116.69			1.0211	0.9624	10.18	8	0	Median	1.1638	0.96109	5.9787	2	0	Median	0.80503	0.9275	15.711	2	0	Median	1.0211	0.94862	2.701	2	0	Median	1.0224	1.0631	14.73	2	0	Median	1100200000	567930000	532320000	224500000	102060000	122440000	454040000	247090000	206960000	239480000	121600000	117880000	182230000	97180000	85047000	31933	3250	30218	197684;197685;197686;197687;197688;197689;197690;197691	267414;267415;267416;267417;267418;267419;267420;267421	267421			8	
LLGAALPLLTK	1	Unmodified	1108.722	0.72198123	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	86.732	86.095	2	2.2891E-06	72026	160511_QHF_FH_JSI10i_3	118.18	85.337			0.69188	0.6768	10.301	8	8	Median	0.79562	0.64903	4.834	2	2	Median	0.63018	0.74788	4.6188	2	2	Median	0.69188	0.6768	0.52939	2	2	Median	0.65318	0.69975	21.97	2	2	Median	1440900000	683940000	756940000	269960000	127030000	142940000	308980000	139000000	169980000	392970000	203810000	189160000	468970000	214110000	254860000	31934	4361	30219	197692;197693;197694;197695;197696;197697;197698;197699;197700	267422;267423;267424;267425;267426;267427;267428;267429;267430;267431	267425			10	
LLGAEEK	1	Unmodified	758.41742	0.41741937	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.32	13.89	2	0.038396	11689	160511_QHF_FH_JSI12i_1	48.174	48.174			1.1302	1.2023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1302	1.2023	NaN	1	0	Median	897210000	433630000	463580000	0	0	0	0	0	0	0	0	0	897210000	433630000	463580000	31935	774	30220	197701	267432	267432			1	
LLGAPTHILR	0	Unmodified	1089.6659	0.66586334	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				47.037	45.428	3	0.0077044	37279	160511_QHF_FH_JSI9i_3	63.073	46.402			1.2789	1.0362	NaN	1	0	Median	1.2789	1.0362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25703000	11757000	13946000	25703000	11757000	13946000	0	0	0	0	0	0	0	0	0	31936	400	30221	197702	267433	267433			0	
LLGASELPIVTPALR	0	Unmodified	1548.9239	0.92392852	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.19	0.726	3	7	6							4	5	5	2	92.227	91.744	2;3	5.7311E-40	80703	160511_QHF_FH_JSI9i_2	203.83	166.64			1.0184	0.93835	19.599	15	4	Median	1.0903	0.91737	9.7687	4	1	Median	0.69637	0.80829	17.835	4	1	Median	1.0184	0.97053	13.943	5	2	Median	1.13	1.2814	6.8073	2	0	Median	1420400000	676160000	744210000	338520000	145770000	192750000	165370000	96058000	69313000	606950000	283090000	323870000	309530000	151240000	158280000	31937	1766	30222	197703;197704;197705;197706;197707;197708;197709;197710;197711;197712;197713;197714;197715;197716;197717;197718	267434;267435;267436;267437;267438;267439;267440;267441;267442;267443;267444;267445;267446;267447;267448;267449;267450;267451;267452;267453;267454;267455;267456;267457;267458;267459;267460	267451			27	
LLGEIVK	1	Unmodified	770.49019	0.49019038	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.124	56.779	2	0.049673	48597	160511_QHF_FH_JSI12i_2	47.743	3.9286			0.2357	0.26456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2357	0.26456	NaN	1	1	Median	110010000	90043000	19966000	0	0	0	0	0	0	0	0	0	110010000	90043000	19966000	31938	2546	30223	197719	267461	267461			1	
LLGELHTLR	0	Unmodified	1050.6186	0.61857879	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.709	39.189	3	0.0001212	32727	160511_QHF_FH_JSI10i_3	77.662	50.359			1.6605	1.5924	85.339	2	2	Median	3.5117	2.9116	NaN	1	1	Median	0.7852	0.87093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49309000	22165000	27143000	18840000	5134200	13706000	30469000	17031000	13437000	0	0	0	0	0	0	31939	2637	30224	197720;197721	267462;267463	267462			2	
LLGELLLDR	0	Unmodified	1040.623	0.62299547	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	74.983	74.409	2	0.00081194	64699	160511_QHF_FH_JSI12i_3	73.665	0			0.88545	0.88287	18.449	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92751	1.0926	NaN	1	0	Median	0.80671	0.75666	NaN	1	0	Median	0.88545	0.88287	NaN	1	0	Median	303370000	158480000	144890000	0	0	0	26681000	12038000	14642000	120000000	65535000	54463000	156690000	80903000	75787000	31940	5561	30225	197722;197723;197724	267464;267465	267465			2	
LLGELLQDNAK	1	Unmodified	1212.6714	0.67140222	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.77	5.48	1	7	8				2	4		5	7	5	5	59.719	56.192	2	2.8437E-07	49660	160511_QHF_FH_JSI9i_2	180.8	128.95			1.8053	1.7771	101.93	22	20	Median	1.2109	1.0245	103.17	5	4	Median	2.4018	2.8257	101.71	7	6	Median	0.54121	0.50294	117.23	5	5	Median	1.4615	1.6062	95.052	5	5	Median	5765000000	2970700000	2794300000	1040500000	470700000	569810000	1653600000	823070000	830500000	1878400000	1045800000	832550000	1192500000	631070000	561460000	31941	1471	30226	197725;197726;197727;197728;197729;197730;197731;197732;197733;197734;197735;197736;197737;197738;197739;197740;197741;197742;197743;197744;197745;197746	267466;267467;267468;267469;267470;267471;267472;267473;267474;267475;267476;267477;267478;267479;267480;267481;267482;267483;267484;267485;267486;267487;267488;267489;267490;267491;267492;267493	267479			28	
LLGFLDVENTPCAR	0	Unmodified	1603.8028	0.8028271	2920	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	80.548	80.049	2	8.7955E-05	71630	160511_QHF_FH_JSI11i_3	113.47	96.447			1.2377	1.1134	41.462	6	5	Median	1.238	1.0619	NaN	1	1	Median	0.49441	0.62892	NaN	1	1	Median	1.2375	1.141	NaN	1	0	Median	1.3341	1.4839	35.521	3	3	Median	116920000	54538000	62381000	6950600	3682100	3268600	13679000	9424200	4254300	31756000	13705000	18051000	64534000	27726000	36808000	31942	2920	30227	197747;197748;197749;197750;197751;197752	267494;267495;267496;267497;267498;267499;267500	267495			7	
LLGFNMIPYLR	0	Unmodified	1335.7373	0.73731372	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		93.34	83.957	2	0.052866	47318	160513_QHF_FH_JSI11Kac_6	41.631	23.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31943	1716	30228	197753	267501	267501			1	
LLGGFQETCSK	1	Unmodified	1238.5965	0.59652272	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		37.786	37.082	2	0.0094079	31608	160511_QHF_FH_JSI11i_2	58.699	51.803			0.84315	0.94708	8.846	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81629	1.0082	NaN	1	1	Median	0.87089	0.88966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	83700000	35770000	47930000	0	0	0	21527000	12122000	9405100	62172000	23647000	38525000	0	0	0	31944	4481	30229	197754;197755	267502;267503;267504	267502			3	
LLGGLAVR	0	Unmodified	797.51232	0.51232281	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	47.502	42.414	2	0.0030354	34833	160511_QHF_FH_JSI9i_3	82.263	15.269			0.8324	0.78606	27.263	8	4	Median	0.95209	0.80269	45.021	2	1	Median	0.65181	0.75432	43.382	2	1	Median	0.8324	0.78606	0.20775	2	1	Median	0.7604	0.78351	35.411	2	1	Median	13735000000	6858900000	6876300000	2937100000	1197900000	1739200000	2254300000	1293500000	960850000	3740300000	1818500000	1921800000	4803600000	2549100000	2254500000	31945	1227	30230	197756;197757;197758;197759;197760;197761;197762;197763	267505;267506;267507;267508;267509;267510;267511;267512;267513;267514;267515	267509			11	
LLGGLDHIVDK	1	Unmodified	1178.6659	0.66592292	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.439	57.779	3	0.021016	49682	160511_QHF_FH_JSI12i_3	35.523	12.297			0.40234	0.35592	32.178	6	6	Median	0.39649	0.33904	NaN	1	1	Median	0.20704	0.25592	NaN	1	1	Median	0.32781	0.31058	26.143	2	2	Median	0.49154	0.52382	7.0029	2	2	Median	135720000	91551000	44174000	10712000	7280200	3432200	19839000	16276000	3562600	48313000	34771000	13542000	56860000	33223000	23637000	31946	3282	30231	197764;197765;197766;197767;197768;197769	267516;267517;267518;267519;267520;267521	267521			6	
LLGGVTIAQGGVLPNIQAVLLPK	1	Unmodified	2270.3726	0.37258843	1091	P16104	H2AFX	Histone H2AX	no	no	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	102.06	102.06	3	1.2994E-14	88796	160511_QHF_FH_JSI12i_3	114.88	107.67			0.94199	0.91959	26.346	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2023	1.1079	NaN	1	0	Median	0.73806	0.76329	NaN	1	0	Median	216970000	108920000	108060000	0	0	0	0	0	0	72071000	28410000	43661000	144900000	80506000	64395000	31947	1091	30232	197770;197771;197772	267522;267523	267523			2	
LLGHEVEDVIIK	1	Unmodified	1363.7711	0.77111627	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							3	3	2	2	59.248	58.43	2;3	5.7318E-08	50380	160511_QHF_FH_JSI12i_2	113.65	98.109			0.8147	0.89526	34.472	10	6	Median	1.0785	0.93667	54.452	3	2	Median	0.67546	0.83686	32.742	3	2	Median	1.0872	1.0793	47.157	2	1	Median	0.80547	0.89526	0.99667	2	1	Median	739560000	370190000	369360000	145600000	70063000	75535000	217010000	123090000	93924000	221250000	105840000	115410000	155690000	71201000	84493000	31948	3904	30233	197773;197774;197775;197776;197777;197778;197779;197780;197781;197782	267524;267525;267526;267527;267528;267529;267530;267531;267532;267533;267534;267535;267536	267525			13	
LLGHLVK	1	Unmodified	778.50651	0.50650915	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.721	23.401	2	0.054807	18914	160511_QHF_FH_JSI9i_3	46.802	27.847			2.7219	2.1827	NaN	1	1	Median	2.7219	2.1827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218290000	79261000	139030000	218290000	79261000	139030000	0	0	0	0	0	0	0	0	0	31949	1064	30234	197783	267537	267537			1	
LLGHLVKEK	2	Acetyl (K)	1077.6546	0.65462995	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.618	32.046	3	0.052152	17581	160513_QHF_FH_JSI11Kac_6	32.329	21.572			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5401500	5401500	0	0	0	0	0	0	0	5401500	5401500	0	0	0	0	31950	1064	30235	197784	267538	267538			1	
LLGHWEEAAHDLALACK	1	Unmodified	1932.9516	0.9516166	1707	P50502;Q8IZP2	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	1	3	71.54	71.073	3;4	3.4972E-08	62896	160511_QHF_FH_JSI11i_3	127.88	112.35			0.92915	1.0593	30.66	5	1	Median	NaN	NaN	NaN	0	0	Median	0.92915	1.0593	NaN	1	0	Median	0.77472	0.73151	NaN	1	0	Median	1.2243	1.2569	37.932	3	1	Plateau	1086600000	477490000	609070000	0	0	0	14098000	8888800	5209400	192350000	102820000	89525000	880120000	365780000	514340000	31951	1707	30236	197785;197786;197787;197788;197789	267539;267540;267541;267542;267543;267544;267545;267546;267547;267548	267539			10	
LLGIETPLPK	1	Unmodified	1079.659	0.65904662	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	69.356	68.556	2	4.4314E-06	60854	160511_QHF_FH_JSI10i_2	109.71	64.633			0.90127	0.92264	9.7031	5	0	Median	1.2193	1.0391	NaN	1	0	Median	0.65147	0.79471	NaN	1	0	Median	0.9278	0.91518	1.1476	2	0	Median	0.86426	0.95286	NaN	1	0	Median	289580000	159010000	130570000	60176000	27787000	32389000	51798000	31938000	19860000	118180000	66881000	51302000	59424000	32401000	27023000	31952	834	30237	197790;197791;197792;197793;197794	267549;267550;267551	267551			3	
LLGIFEQNQDRK	1	Unmodified	1459.7783	0.77832691	0	A0A024RBG1	NUDT4		yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.8	5.6		4							1	1	1	2	1	49.154	46.423	3	0.049698	25086	160513_QHF_FH_JSI11Kac_6	13.589	1.5313			0.70853	0.84711	20.375	5	0	Median	1.0109	0.84711	NaN	1	0	Median	0.70853	0.86459	NaN	1	0	Median	0.841	0.82726	24.271	2	0	Median	0.54464	0.5849	NaN	1	0	Median	1995900000	1118300000	877610000	562330000	236370000	325960000	674860000	407430000	267430000	676790000	429800000	246990000	81901000	44678000	37223000	31953	0	30238	197795;197796;197797;197798;197799	267552;267553	267552			2	
LLGIHTQTRPVIIQALWQYIK	1	Unmodified	2490.4475	0.44748471	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	16	0									2	1			1	92.293	83.183	4	2.5964E-17	46550	160513_QHF_FH_JSI9Kac_6	131.67	116.23			1.0031	0.96298	42.439	2	0	Median	0.82901	0.71333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2136	1.3	NaN	1	0	Median	129950000	65510000	64438000	86740000	46264000	40476000	0	0	0	0	0	0	43208000	19246000	23962000	31954	4093	30239	197800;197801	267554;267555;267556	267554			3	
LLGISLYAEQPAK	1	Unmodified	1401.7868	0.78676633	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	72.494	71.856	2	8.3862E-05	62197	160511_QHF_FH_JSI12i_2	98.04	77.17			0.80419	0.8297	6.3532	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90485	0.86782	NaN	1	0	Median	0.71473	0.79325	NaN	1	0	Median	54044000	28918000	25127000	0	0	0	0	0	0	42221000	23103000	19117000	11823000	5814100	6009300	31955	4314	30240	197802;197803	267557;267558	267558			2	
LLGLAGFFPLHPMMITNAER	0	2 Oxidation (M)	2259.1544	0.15441551	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	2	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	89.868	81.698	3	0.00099055	45352	160513_QHF_FH_JSI11Kac_6	52.731	43.684			0.85267	0.99236	8.1923	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83711	0.99236	NaN	1	0	Median	0.89955	0.86758	NaN	1	0	Median	0.94948	1.0063	NaN	1	0	Median	192760000	107540000	85216000	0	0	0	72040000	39612000	32428000	66872000	38059000	28813000	53849000	29874000	23975000	31956	5586	30241	197804;197805;197806	267559;267560	267559		2700;2701	2	
LLGLAGFFPLHPMMITNAER	0	Oxidation (M)	2243.1595	0.15950089	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	92.904	84.701	3	8.0808E-14	47430	160513_QHF_FH_JSI9Kac_6	129.11	92.472			1.1101	1.0514	12.023	7	1	Median	1.2651	1.0682	8.9809	2	0	Median	0.86186	1.0136	5.3251	2	1	Median	1.1101	1.0514	NaN	1	0	Median	1.0307	1.095	26.378	2	0	Median	1039000000	499530000	539480000	273860000	115120000	158740000	308780000	152480000	156300000	227340000	116570000	110770000	229050000	115370000	113680000	31957	5586	30241	197807;197808;197809;197810;197811;197812;197813	267561;267562;267563;267564;267565;267566;267567	267563		2700;2701	7	
LLGLAGFFPLHPMMITNAER	0	Unmodified	2227.1646	0.16458627	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.518	87.124	3	1.6491E-34	51327	160513_QHF_FH_JSI10Kac_6	163.45	142.25			1.0813	1.0376	5.4855	4	0	Linear	1.3132	1.1285	NaN	1	0	Median	0.90441	1.0613	NaN	1	0	Median	1.0819	1.016	NaN	1	0	Median	1.0807	1.1426	NaN	1	0	Median	2982200000	1549200000	1433100000	555180000	281230000	273950000	1043000000	523580000	519460000	1107900000	547950000	559960000	276100000	196390000	79706000	31958	5586	30241	197814;197815;197816;197817	267568;267569;267570;267571	267571			4	
LLGLGQK	1	Unmodified	727.45922	0.4592246	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	32.605	31.849	2	0.02555	26484	160511_QHF_FH_JSI12i_3	54.525	9.5522			0.77552	0.96443	45.835	5	1	Median	1.4191	1.1803	NaN	1	0	Median	0.77552	0.96443	NaN	1	0	Median	0.42537	0.43036	NaN	1	1	Median	0.87031	0.93189	48.664	2	0	Median	3161600000	1350100000	1811500000	387880000	167150000	220740000	398660000	201390000	197270000	266640000	132260000	134380000	2108400000	849310000	1259100000	31959	1649	30242	197818;197819;197820;197821;197822	267572;267573;267574;267575;267576;267577;267578;267579	267578			8	
LLGLGSASGSVGR	0	Unmodified	1172.6513	0.65133548	4434	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				48.174	46.564	2	0.004257	38159	160511_QHF_FH_JSI9i_3	76.465	33.438			1.3433	1.086	NaN	1	1	Median	1.3433	1.086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57348000	22769000	34579000	57348000	22769000	34579000	0	0	0	0	0	0	0	0	0	31960	4434	30243	197823	267580	267580			1	
LLGLLFPLLAR	0	Unmodified	1224.7958	0.79581488	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	3	3	99.619	93.981	2	2.6492E-32	53604	160513_QHF_FH_JSI10Kac_6	203.57	191.52			0.90768	0.92322	172.74	12	8	Median	1.4323	1.1923	215.22	3	2	Median	0.82216	0.96381	201.87	3	2	Median	0.93541	0.88434	207.1	3	2	Median	0.88077	0.86725	180.68	3	2	Median	19981000000	10154000000	9827300000	4135200000	1968600000	2166600000	8088600000	4645800000	3442800000	4708400000	2196300000	2512100000	3049100000	1343300000	1705800000	31961	3741	30244	197824;197825;197826;197827;197828;197829;197830;197831;197832;197833;197834;197835	267581;267582;267583;267584;267585;267586;267587;267588;267589;267590;267591;267592;267593	267592			13	
LLGLTGSTK	1	Unmodified	888.52803	0.52803245	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.257	36.184	2	0.0049637	31565	160511_QHF_FH_JSI11i_3	56.258	31.315			1.8465	1.781	24.782	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2848	2.1221	NaN	1	0	Median	1.4923	1.4947	NaN	1	0	Median	222040000	105130000	116910000	0	0	0	0	0	0	98859000	45960000	52898000	123180000	59172000	64008000	31962	382	30245	197836;197837	267594;267595	267594			2	
LLGLYHTMDK	1	Unmodified	1189.6165	0.61652988	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	3	1	2	46.223	45.004	2;3	0.00037588	36975	160511_QHF_FH_JSI9i_3	76.143	48.401			0.937	1.1334	81.597	7	7	Median	1.9567	1.6178	61.3	3	3	Plateau	0.937	1.1334	58.347	3	3	Median	0.1953	0.18861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	369370000	177240000	192130000	130760000	57489000	73269000	147460000	69661000	77796000	62249000	50087000	12162000	28906000	0	28906000	31963	2592	30246	197838;197839;197840;197841;197842;197843;197844;197845;197846	267596;267597;267598;267599;267600;267601;267602;267603;267604	267601			9	
LLGMGDIEGLIDK	1	Unmodified	1372.7272	0.72720254	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	99.122	98.99	2	0.00012273	87604	160511_QHF_FH_JSI10i_2	110.08	77.757			0.85763	0.875	19.865	6	4	Median	1.2527	1.0566	32.868	2	2	Median	0.76657	0.91868	20.975	2	2	Median	0.81755	0.8274	NaN	1	0	Median	0.83013	0.91418	NaN	1	0	Median	424120000	198270000	225850000	132960000	47592000	85366000	126910000	66031000	60879000	89257000	41089000	48168000	74995000	43557000	31438000	31964	1929	30247	197847;197848;197849;197850;197851;197852	267605;267606;267607;267608;267609;267610;267611;267612	267612			8	
LLGNFLQWYGIFSNK	1	Unmodified	1798.9406	0.94064121	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.17	88.751	2;3	1.5646E-160	52977	160513_QHF_FH_JSI10Kac_6	300.95	254.95			0.95512	0.91962	10.12	8	0	Median	1.0115	0.88009	3.8724	2	0	Median	0.9151	1.0867	5.5191	2	0	Median	0.92959	0.882	4.4575	2	0	Median	0.92825	0.97619	6.9926	2	0	Median	2442800000	1250000000	1192800000	608500000	315290000	293210000	681330000	341430000	339900000	683250000	335260000	347990000	469730000	258070000	211660000	31965	5656	30248	197853;197854;197855;197856;197857;197858;197859;197860	267613;267614;267615;267616;267617;267618;267619;267620;267621;267622;267623;267624;267625;267626	267624			14	
LLGNSLLPIR	0	Unmodified	1094.6812	0.68117905	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.532	73.738	2	0.00054212	64059	160511_QHF_FH_JSI12i_3	71.379	46.457			0.93765	0.94584	12.72	4	0	Median	1.3601	1.1174	NaN	1	0	Median	0.83857	0.95269	NaN	1	0	Median	1.0485	0.93904	NaN	1	0	Median	0.78421	0.81887	NaN	1	0	Median	169160000	81580000	87584000	40258000	17326000	22932000	31794000	17042000	14752000	48087000	20500000	27587000	49024000	26712000	22312000	31966	2181	30249	197861;197862;197863;197864	267627;267628;267629;267630	267630			4	
LLGNTFVALSDLR	0	Unmodified	1417.7929	0.79291434	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	1	3	1	2	88.12	86.811	2;3	3.1776E-07	73687	160511_QHF_FH_JSI10i_3	153.34	102.27			0.8768	0.98062	26.173	7	1	Median	1.4946	1.2187	NaN	1	0	Median	0.52636	0.63985	27.778	3	1	Median	1.0366	0.98062	NaN	1	0	Median	0.8549	0.88821	14.374	2	0	Median	596620000	338220000	258400000	62537000	25527000	37010000	187280000	117530000	69749000	125110000	67957000	57154000	221700000	127210000	94489000	31967	1585	30250	197865;197866;197867;197868;197869;197870;197871	267631;267632;267633;267634;267635;267636;267637;267638;267639	267633			9	
LLGNVLVVVLAR	0	Unmodified	1264.8231	0.82309226	72	CON__Q3SX09;CON__P02070			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	92.23	84.163	2	3.3643E-14	46850	160513_QHF_FH_JSI11Kac_6	172.23	132.19		+	0.995	1.0148	19.041	6	3	Median	1.2156	1.0399	NaN	1	1	Median	0.77574	0.92019	10.373	2	1	Median	1.3375	1.2607	22.804	2	1	Median	0.86937	0.92192	NaN	1	0	Median	2723800000	1242700000	1481100000	523140000	212990000	310150000	750150000	372160000	377990000	1059100000	454220000	604910000	391430000	203330000	188100000	31968	72	30251	197872;197873;197874;197875;197876;197877;197878	267640;267641;267642;267643;267644;267645;267646;267647	267641			8	
LLGPAGLTWER	0	Unmodified	1211.6663	0.66625727	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.429	69.131	2	0.032901	59867	160511_QHF_FH_JSI12i_3	54.436	54.436			0.75832	0.75563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75832	0.75563	NaN	1	0	Median	77507000	34390000	43117000	0	0	0	0	0	0	0	0	0	77507000	34390000	43117000	31969	681	30252	197879	267648	267648			0	
LLGPDAAINLTDPDGALAK	1	Unmodified	1863.9942	0.99419293	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	4	2	3	86.65	86.134	2;3	2.8151E-10	78324	160511_QHF_FH_JSI10i_1	157.38	128.06			0.90014	0.91694	12.591	12	3	Median	1.1257	0.91968	13.221	3	0	Plateau	0.7032	0.82488	10.762	4	2	Median	0.89451	0.871	3.6237	2	0	Median	0.96062	1.0055	9.1639	3	1	Median	1023300000	537560000	485710000	198930000	87750000	111180000	265540000	152990000	112550000	284140000	146380000	137760000	274660000	150450000	124210000	31970	2441	30253	197880;197881;197882;197883;197884;197885;197886;197887;197888;197889;197890;197891	267649;267650;267651;267652;267653;267654;267655;267656;267657;267658;267659;267660;267661;267662;267663;267664;267665;267666;267667;267668;267669;267670;267671;267672;267673;267674	267662			26	
LLGPGVNYSGCQITWAK	1	Unmodified	1862.9349	0.93490391	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	74.034	73.889	2	8.3366E-08	65846	160511_QHF_FH_JSI11i_3	161.1	138.42			1.2493	1.2329	33.716	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0289	0.9714	NaN	1	0	Median	1.5169	1.5649	NaN	1	0	Median	72066000	33729000	38337000	0	0	0	0	0	0	31027000	15436000	15591000	41039000	18293000	22746000	31971	1500	30254	197892;197893;197894	267675;267676;267677;267678	267675			4	
LLGPHVEGLK	1	Unmodified	1061.6233	0.62332982	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	39.515	38.727	3	0.00035383	33962	160511_QHF_FH_JSI9i_2	65.5	42.859			1.0225	1.0419	16.769	7	1	Median	1.2242	1.0419	NaN	1	0	Median	0.70446	0.84465	5.8235	2	1	Median	1.0899	1.0668	6.1119	2	0	Median	1.1352	1.1973	18.714	2	0	Median	1055700000	516660000	539020000	82459000	43632000	38827000	140160000	78717000	61444000	410980000	205920000	205060000	422090000	188390000	233700000	31972	2404	30255	197895;197896;197897;197898;197899;197900;197901	267679;267680;267681;267682;267683;267684;267685;267686;267687;267688;267689	267683			10	
LLGPLGMK	1	Unmodified	827.4939	0.49389555	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	53.07	52.335	2	0.037165	46354	160511_QHF_FH_JSI10i_2	40.103	23.176			1.0823	1.1044	2.6489	3	0	Plateau	1.2038	1.0552	NaN	1	0	Median	0.86535	1.0584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0823	1.1063	NaN	1	0	Median	176570000	85826000	90740000	32273000	13007000	19266000	43962000	24661000	19300000	0	0	0	100330000	48157000	52175000	31973	1435	30256	197902;197903;197904	267690	267690			1	
LLGPNASPDGLIPWTR	0	Unmodified	1705.9152	0.91515474	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	2	2	3	89.695	89.226	2;3	2.423E-40	79690	160511_QHF_FH_JSI11i_3	230.14	207.26			1.0562	0.99324	28.204	6	1	Median	1.5935	1.3497	NaN	1	0	Median	0.74197	0.86993	51.644	2	1	Median	1.0562	0.99324	3.1417	2	0	Median	0.98678	0.96449	NaN	1	0	Median	343290000	166490000	176800000	11622000	4953700	6668300	39630000	21386000	18245000	164480000	79398000	85082000	127560000	60755000	66805000	31974	1528	30257	197905;197906;197907;197908;197909;197910;197911;197912	267691;267692;267693;267694;267695;267696;267697;267698;267699;267700;267701;267702	267692			12	
LLGPTVMLGGCEFSR	0	Unmodified	1635.8113	0.8112833	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		4								1		1	2	60.104	59.074	2	0.012979	50589	160511_QHF_FH_JSI12i_2	43.77	2.7759			0.88338	0.912	12.686	4	0	Median	1.1419	1.0022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0529	1.059	NaN	1	0	Median	0.74116	0.82988	0	2	0	Median	485870000	269980000	215890000	132390000	72605000	59785000	0	0	0	117680000	60538000	57146000	235800000	136830000	98961000	31975	3580	30258	197913;197914;197915;197916	267703;267704	267703			2	
LLGPVLVK	1	Unmodified	837.56878	0.56877505	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	56.138	55.117	2	0.0024581	47720	160511_QHF_FH_JSI11i_2	79.939	60.579			0.84432	0.87928	10.742	7	0	Median	0.99165	0.82852	8.4097	2	0	Median	0.76985	0.9086	5.5355	2	0	Median	0.73981	0.76064	NaN	1	0	Median	0.91577	0.97645	8.3144	2	0	Median	2090000000	1148600000	941370000	425730000	216440000	209290000	529940000	307410000	222530000	562410000	346060000	216350000	571930000	278720000	293210000	31976	263	30259	197917;197918;197919;197920;197921;197922;197923	267705;267706;267707;267708;267709;267710;267711;267712;267713;267714;267715	267713			11	
LLGQFSEK	1	Unmodified	920.49673	0.49673232	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	3	3	2	32.962	32.318	2	0.0018444	28239	160511_QHF_FH_JSI9i_2	84.568	57.043			1.0034	1.0377	22.262	9	2	Median	1.087	0.94257	NaN	1	0	Median	0.83514	1.0377	11.098	3	1	Median	0.99082	1.0136	26.461	3	0	Median	1.3117	1.419	2.446	2	1	Median	2527100000	1227900000	1299200000	283660000	121100000	162570000	636870000	383100000	253770000	852630000	411160000	441460000	753920000	312510000	441410000	31977	1791	30260	197924;197925;197926;197927;197928;197929;197930;197931;197932	267716;267717;267718;267719;267720;267721;267722;267723	267720			8	
LLGQFSEKELAAEK	2	Acetyl (K)	1603.8457	0.84573777	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.725							4	8	5	3	5	4	5	73.703	63.567	2;3	3E-57	35222	160513_QHF_FH_JSI10Kac_6	217.21	164.42			0.97004	0.99504	19.036	16	0	Median	1.1083	0.93492	5.9038	3	0	Plateau	0.78414	0.93956	26.325	5	0	Median	0.67809	0.66812	25.846	3	0	Plateau	0.98803	1.037	10.352	5	0	Median	816440000	417520000	398910000	107390000	52937000	54457000	217640000	112610000	105030000	259510000	121980000	137530000	231900000	130000000	101900000	31978	1791	30261	197933;197934;197935;197936;197937;197938;197939;197940;197941;197942;197943;197944;197945;197946;197947;197948;197949	267724;267725;267726;267727;267728;267729;267730;267731;267732;267733;267734;267735;267736;267737;267738;267739;267740;267741;267742;267743;267744;267745;267746;267747	267747	1804		24	
LLGQFTLIGIPPAPR	0	Unmodified	1591.945	0.94499831	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.78	1	10	8						15	9	6	11	8	96.191	92.627	2;3	3.2181E-65	88589	160511_QHF_FH_JSI10i_2	226.73	167.75			1.0515	1.0139	15.48	32	1	Median	1.2218	1.0407	6.7576	8	0	Median	0.85295	1.0062	5.9627	6	0	Median	1.0634	1.0136	24.914	11	1	Median	0.98221	1.029	8.4547	7	0	Median	11712000000	5841000000	5871100000	2834500000	1312000000	1522600000	2649900000	1462800000	1187100000	4369000000	2107100000	2261900000	1858700000	959110000	899550000	31979	1480	30262	197950;197951;197952;197953;197954;197955;197956;197957;197958;197959;197960;197961;197962;197963;197964;197965;197966;197967;197968;197969;197970;197971;197972;197973;197974;197975;197976;197977;197978;197979;197980;197981;197982;197983	267748;267749;267750;267751;267752;267753;267754;267755;267756;267757;267758;267759;267760;267761;267762;267763;267764;267765;267766;267767;267768;267769;267770;267771;267772;267773;267774;267775;267776;267777;267778;267779;267780;267781;267782;267783;267784;267785;267786;267787;267788;267789;267790;267791;267792;267793;267794;267795;267796;267797;267798;267799;267800;267801;267802;267803;267804;267805;267806;267807;267808;267809;267810;267811;267812;267813;267814;267815;267816;267817;267818;267819;267820;267821;267822;267823;267824;267825;267826;267827;267828;267829;267830;267831;267832;267833;267834;267835;267836;267837;267838;267839;267840;267841;267842;267843;267844;267845;267846;267847;267848;267849;267850;267851;267852;267853;267854;267855;267856;267857;267858;267859;267860;267861;267862;267863;267864;267865;267866;267867;267868;267869;267870;267871;267872;267873;267874;267875;267876	267834			129	
LLGSDGSPLMDMLQLAEEPVPQAGQELR	0	Unmodified	2993.4838	0.48380773	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.47	102.39	3	1.0174E-26	90281	160511_QHF_FH_JSI9i_2	137.94	131.36			1.2157	1.0384	NaN	1	1	Median	1.2157	1.0384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137840000	39703000	98142000	137840000	39703000	98142000	0	0	0	0	0	0	0	0	0	31980	3167	30263	197984	267877	267877			1	
LLGSGYGGLTGGSSR	0	Unmodified	1380.6997	0.69974224	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			44.057	42.87	2	0.010776	35735	160511_QHF_FH_JSI10i_3	58.676	44.01			0.80083	0.97354	12.621	3	0	Median	1.1751	1.0389	NaN	1	0	Median	0.75363	0.89029	12.642	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109610000	62229000	47383000	30853000	15324000	15529000	78758000	46904000	31854000	0	0	0	0	0	0	31981	3266	30264	197985;197986;197987	267878;267879	267878			2	
LLGSLYALGIPK	1	Unmodified	1243.754	0.75400964	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		2	2						4	1	1	3	3	85.418	81.082	2	7.3524E-19	41245	160513_QHF_FH_JSI9Kac_6	150.61	123.28			1.0459	1.0135	33.524	8	1	Median	1.1596	0.98927	NaN	1	0	Median	0.87126	1.0185	NaN	1	0	Median	1.2506	1.22	51.829	3	1	Median	0.93766	1.0085	15.261	3	0	Median	941910000	419420000	522490000	121310000	60988000	60325000	117680000	59025000	58654000	366150000	153860000	212290000	336760000	145550000	191220000	31982	3955	30265	197988;197989;197990;197991;197992;197993;197994;197995	267880;267881;267882;267883;267884;267885;267886;267887;267888;267889;267890;267891;267892	267885			13	
LLGSMPENAQIDDDVFDK	1	Unmodified	2005.9303	0.93027204	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	78.673	78.198	2	1.7006E-98	71173	160511_QHF_FH_JSI12i_1	261.27	235.16			0.9684	0.9278	6.0351	4	0	Median	1.0868	0.8913	NaN	1	0	Median	0.73295	0.88715	NaN	1	0	Median	0.97287	0.9658	NaN	1	0	Median	0.96396	1.0023	NaN	1	0	Median	297680000	146110000	151580000	54578000	22007000	32571000	65339000	30650000	34689000	102860000	56228000	46628000	74909000	37220000	37689000	31983	4337	30266	197996;197997;197998;197999;198000	267893;267894;267895;267896;267897;267898;267899;267900;267901;267902	267896			10	
LLGSTIPLCSAQWER	0	Unmodified	1729.8821	0.88214006	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	77.631	77.106	2	8.9186E-07	66931	160511_QHF_FH_JSI12i_3	163.78	127.82			0.40438	0.40511	87.142	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37646	0.36496	97.102	2	1	Median	0.4798	0.49729	111.33	2	1	Median	169130000	100890000	68234000	0	0	0	0	0	0	96793000	63715000	33078000	72336000	37180000	35156000	31984	1704	30267	198001;198002;198003;198004	267903;267904;267905;267906;267907	267906			5	
LLGTFLK	1	Unmodified	790.49528	0.49527576	5778				yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		70.249	69.508	2	0.0572	61912	160511_QHF_FH_JSI11i_3	41.502	0	+		1.3575	1.1905	13.069	2	0	Median	1.6006	1.3057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1513	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	253330000	112340000	141000000	109420000	44537000	64883000	0	0	0	143910000	67798000	76116000	0	0	0	31985	5778	30268	198005;198006	267908;267909	267908			2	
LLGTIYTAAEEIEAVGGK	1	Unmodified	1833.9724	0.97239485	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.88		13	8						1	3	5	8	6	99.862	99.535	2;3	6.1869E-122	47231	160513_QHF_FH_JSI10Kac_6	297.5	205.92			2.5068	2.1578	189.88	21	21	Median	2.5068	2.1578	186.38	3	3	Median	0.7461	0.91787	189.5	4	4	Median	1.5551	1.4609	216.84	8	8	Median	1.2672	1.2609	201.28	6	6	Median	1169600000	597020000	572580000	129290000	50633000	78656000	272170000	186930000	85246000	425960000	189500000	236460000	342180000	169960000	172220000	31986	3175	30269	198007;198008;198009;198010;198011;198012;198013;198014;198015;198016;198017;198018;198019;198020;198021;198022;198023;198024;198025;198026;198027;198028	267910;267911;267912;267913;267914;267915;267916;267917;267918;267919;267920;267921;267922;267923;267924;267925;267926;267927;267928;267929;267930;267931	267931			22	
LLGTPTEEQWPSMTK	1	Unmodified	1716.8393	0.83927219	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	67.533	66.792	2	9.8443E-05	57296	160511_QHF_FH_JSI12i_2	105.46	87.193			0.88672	0.91408	12.706	8	1	Median	1.24	1.0334	15.327	2	1	Median	0.77606	0.93273	5.6403	2	0	Median	0.86071	0.84119	4.5419	2	0	Median	0.93858	1.0188	17.368	2	0	Median	286470000	142480000	143990000	40378000	16003000	24375000	82245000	43452000	38794000	82110000	40518000	41592000	81732000	42504000	39228000	31987	2151	30270	198029;198030;198031;198032;198033;198034;198035;198036	267932;267933;267934;267935;267936;267937;267938;267939;267940;267941;267942;267943;267944	267933			13	
LLGTQHGEGNSALSPLNPGELLIALHNIDSVK	1	Unmodified	3306.7572	0.75720412	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			102.37	102.21	4	3.0758E-17	83230	160511_QHF_FH_JSI9i_3	86.261	76.799			0.91619	0.90309	31.277	2	1	Median	1.3377	1.1266	NaN	1	0	Median	0.62752	0.7239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133360000	89793000	43566000	34517000	15548000	18970000	98842000	74245000	24596000	0	0	0	0	0	0	31988	3888	30271	198037;198038	267945;267946;267947	267946			3	
LLGTVIQYGNVIQLLHLK	1	Unmodified	2021.2037	0.20373219	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	2	1	97.599	92.234	2;3	4.8126E-98	46780	160513_QHF_FH_JSI12Kac_6	242.42	217.06			1.3153	1.0544	31.781	7	0	Median	1.3489	1.1084	7.073	2	0	Median	0.78549	0.91741	2.2404	2	0	Median	1.4115	1.3373	47.668	2	0	Median	1.7776	1.8625	NaN	1	0	Median	5755300000	3037800000	2717600000	1275100000	518940000	756210000	2264400000	1383600000	880750000	1292200000	675070000	617170000	923560000	460130000	463430000	31989	2549	30272	198039;198040;198041;198042;198043;198044;198045;198046	267948;267949;267950;267951;267952;267953;267954;267955;267956;267957;267958	267955			11	
LLGTVMATALMPK	1	Unmodified	1344.7509	0.75091487	5211	Q9P2D3	HEATR5B	HEAT repeat-containing protein 5B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.03	84.858	2	0.00019662	73683	160511_QHF_FH_JSI12i_3	104.82	90.617			2.1154	2.1906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1154	2.1906	NaN	1	1	Median	22530000	7820400	14710000	0	0	0	0	0	0	0	0	0	22530000	7820400	14710000	31990	5211	30273	198047	267959	267959			1	
LLGWIQNK	1	Unmodified	970.56	0.56000128	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.85		7	8						5	6	5	5	4	57.148	54.206	2	3.1907E-10	48067	160511_QHF_FH_JSI11i_3	163.41	112.45			1.0128	1.091	96.05	20	17	Median	0.86987	0.75182	115.85	6	6	Median	0.84716	1.0045	100.54	5	4	Median	1.2107	1.1849	108.09	5	4	Median	1.0131	1.1007	79.456	4	3	Median	29993000000	15531000000	14462000000	6215200000	2820300000	3394900000	5813800000	3142200000	2671700000	6959300000	3385100000	3574300000	11005000000	6183200000	4821600000	31991	1192;512;2527	30274	198048;198049;198050;198051;198052;198053;198054;198055;198056;198057;198058;198059;198060;198061;198062;198063;198064;198065;198066;198067	267960;267961;267962;267963;267964;267965;267966;267967;267968;267969;267970;267971;267972;267973;267974;267975;267976;267977;267978;267979;267980;267981;267982;267983;267984;267985;267986;267987;267988;267989	267963			30	
LLGWLLFK	1	Unmodified	988.61097	0.61097422	3544	Q8N5I4	DHRSX	Dehydrogenase/reductase SDR family member on chromosome X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	3	3	95.552	89.96	2	0.00069002	82325	160511_QHF_FH_JSI9i_3	99.919	58.417			0.84017	0.82183	67.445	12	8	Median	0.96691	0.77642	109.69	3	2	Median	0.73005	0.8699	78.599	3	2	Median	0.68514	0.64942	63.567	3	2	Plateau	0.50928	0.53477	43.409	3	2	Plateau	2706600000	1468000000	1238700000	489440000	252490000	236940000	1037500000	537040000	500450000	688560000	381170000	307390000	491160000	297250000	193910000	31992	3544	30275	198068;198069;198070;198071;198072;198073;198074;198075;198076;198077;198078;198079	267990;267991;267992;267993;267994;267995;267996;267997;267998;267999;268000;268001	267993			12	
LLGYQGIAVVMEELLK	1	Unmodified	1774.9903	0.99029352	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	2	4	2	3	101.92	98.332	2;3	1.8769E-65	90190	160511_QHF_FH_JSI12i_3	232.42	190.88			0.90921	0.96082	25.697	11	6	Median	1.0512	0.90227	21.708	2	1	Median	0.72833	0.84497	31.289	4	4	Linear	0.95575	0.89711	34.464	2	0	Median	0.79842	0.83948	11.219	3	1	Median	616550000	322350000	294200000	165490000	77830000	87662000	117990000	64301000	53692000	89487000	40954000	48533000	243570000	139260000	104310000	31993	3229;4066	30276	198080;198081;198082;198083;198084;198085;198086;198087;198088;198089;198090	268002;268003;268004;268005;268006;268007;268008;268009;268010;268011;268012;268013;268014;268015	268009			14	
LLHAQYGELIQPR	0	Unmodified	1536.8413	0.84126152	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.043	49.926	3	0.0020825	44210	160511_QHF_FH_JSI11i_3	50.088	36.371			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31994	4205	30277	198091;198092	268016;268017	268016			2	
LLHDLQIGEK	1	Unmodified	1164.6503	0.65027285	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	4	3	39.358	38.841	2;3	1.6672E-05	33631	160511_QHF_FH_JSI12i_2	86.014	76.657			0.62527	0.67219	75.061	9	6	Median	0.44661	0.37421	NaN	1	1	Median	0.25345	0.31496	NaN	1	1	Median	0.70307	0.68111	71.784	4	3	Median	1.417	1.4624	62.386	3	1	Median	1120400000	532570000	587810000	67717000	36998000	30720000	88609000	64532000	24077000	475250000	227310000	247950000	488810000	203740000	285070000	31995	1679	30278	198093;198094;198095;198096;198097;198098;198099;198100;198101;198102	268018;268019;268020;268021;268022;268023;268024;268025;268026;268027;268028;268029	268021			12	
LLHDQIEK	1	Unmodified	994.54475	0.54474515	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	15.489	14.913	2	0.027247	12031	160511_QHF_FH_JSI12i_2	42.287	24.902			1.0286	1.1021	24.715	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90236	0.9254	NaN	1	1	Median	1.1725	1.3126	NaN	1	0	Median	205570000	110220000	95358000	0	0	0	0	0	0	96694000	56481000	40213000	108880000	53736000	55144000	31996	1016	30279	198103;198104	268030;268031	268030			2	
LLHDQVGVIQFGPYK	1	Unmodified	1712.925	0.92499115	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.82		9	4						4	3	3	6	5	69.971	67.315	2;3	8.0371E-30	58403	160511_QHF_FH_JSI12i_3	224.82	189.3			1.0537	0.80274	16.26	16	1	Linear	1.1547	1.0043	6.3271	3	0	Median	0.9175	1.138	15.29	3	0	Median	1.0529	0.98685	18.855	5	1	Median	1.0544	1.0668	20.598	5	0	Median	3551900000	1672200000	1879800000	390650000	169930000	220720000	600020000	314720000	285300000	1329300000	620910000	708370000	1232000000	566600000	665360000	31997	1805	30280	198105;198106;198107;198108;198109;198110;198111;198112;198113;198114;198115;198116;198117;198118;198119;198120;198121	268032;268033;268034;268035;268036;268037;268038;268039;268040;268041;268042;268043;268044;268045;268046;268047;268048;268049;268050;268051;268052;268053;268054;268055;268056;268057;268058;268059;268060;268061;268062;268063;268064;268065;268066;268067;268068	268062			37	
LLHEQEVESR	0	Unmodified	1238.6255	0.62551466	2954	Q5T7V8	GORAB	RAB6-interacting golgin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				14.274	13.557	3	0.043533	11077	160511_QHF_FH_JSI9i_2	15.586	11.823			0.7134	0.62747	NaN	1	0	Median	0.7134	0.62747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33186000	20414000	12772000	33186000	20414000	12772000	0	0	0	0	0	0	0	0	0	31998	2954	30281	198122	268069	268069			1	
LLHEVQELTTEVEK	1	Unmodified	1666.8778	0.87776618	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.39	0.487		11	7							2	3	6	7	59.981	59.407	2;3	9.6358E-13	51247	160511_QHF_FH_JSI12i_2	119.76	83.82			0.45248	0.46009	179.75	12	12	Median	3.9044	3.4013	286.54	2	2	Median	0.37677	0.46863	NaN	1	1	Median	0.45175	0.42832	183.43	5	5	Median	1.5548	1.731	177.03	4	4	Median	1436200000	854690000	581550000	55516000	18873000	36644000	70112000	36315000	33797000	699810000	468240000	231560000	610800000	331260000	279550000	31999	2441	30282	198123;198124;198125;198126;198127;198128;198129;198130;198131;198132;198133;198134;198135;198136;198137;198138;198139;198140	268070;268071;268072;268073;268074;268075;268076;268077;268078;268079;268080;268081;268082;268083;268084;268085;268086;268087	268075			18	
LLHGFNAEGIHFS	0	Unmodified	1440.715	0.71499837	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	64.429	63.704	3	7.6332E-05	56284	160511_QHF_FH_JSI11i_3	52.495	47.781			0.76812	0.93867	41.384	5	1	Median	1.4436	1.2575	NaN	1	0	Median	0.76812	0.93867	NaN	1	0	Median	0.76502	0.73518	69.383	2	1	Median	0.74136	0.80699	NaN	1	0	Median	238190000	121540000	116650000	30285000	10962000	19323000	39063000	17893000	21170000	143680000	77837000	65847000	25157000	14846000	10311000	32000	5446	30283	198141;198142;198143;198144;198145	268088;268089;268090;268091;268092;268093	268088			6	
LLHGHSSLK	1	Unmodified	990.56106	0.56106391	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				8.6781	8.0863	3	0.0019248	5811	160511_QHF_FH_JSI9i_3	52.579	41.705			1.2074	1.0085	NaN	1	0	Median	1.2074	1.0085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101610000	42468000	59144000	101610000	42468000	59144000	0	0	0	0	0	0	0	0	0	32001	2610	30284	198146	268094	268094			1	
LLHHVTEEK	1	Unmodified	1104.5928	0.59275797	2964	Q5TBB1	RNASEH2B	Ribonuclease H2 subunit B	yes	yes	0	0	0	0				By MS/MS	3	0			3										3	7.8178	7.9155	2;3	0.0011709	5353	160511_QHF_FH_JSI12i_3	58.699	23.157			0.82753	0.82963	35.075	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82753	0.82963	35.075	3	2	Median	198980000	83646000	115340000	0	0	0	0	0	0	0	0	0	198980000	83646000	115340000	32002	2964	30285	198147;198148;198149	268095;268096;268097	268095			3	
LLHIEELR	0	Unmodified	1021.592	0.59202969	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.8		7	4						1	2	2	5	3	43.907	42.529	2;3	0.00018452	37563	160511_QHF_FH_JSI10i_2	93.162	79.571			0.94553	0.90663	30.356	12	0	Median	1.0324	0.87786	11.089	2	0	Median	0.73309	0.88653	15.59	2	0	Median	0.93075	0.86573	32.022	5	0	Median	1.0362	1.1267	44.048	3	0	Median	1787700000	855710000	932010000	160410000	83806000	76608000	329860000	202130000	127740000	769580000	350370000	419210000	527860000	219410000	308450000	32003	5486	30286	198150;198151;198152;198153;198154;198155;198156;198157;198158;198159;198160;198161	268098;268099;268100;268101;268102;268103;268104;268105;268106;268107;268108	268105			11	
LLHIEELRELQTK	1	Unmodified	1620.9199	0.91990577	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		59.739	58.723	3;4	4.1192E-06	49348	160511_QHF_FH_JSI10i_3	122.45	90.62			1.0284	0.99135	33.906	6	1	Median	1.2018	0.99135	5.0388	2	0	Median	0.82553	0.97853	16.04	2	0	Median	0.80062	0.76342	67.813	2	1	Median	NaN	NaN	NaN	0	0	Median	568650000	275630000	293020000	176010000	48981000	127030000	209240000	121700000	87531000	183410000	104940000	78467000	0	0	0	32004	5486	30287	198162;198163;198164;198165;198166;198167;198168	268109;268110;268111;268112;268113;268114;268115;268116;268117;268118	268113			10	
LLHIIIDDNKR	1	Unmodified	1348.7827	0.78268401	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			49.611	40.999	4	0.0005355	22617	160513_QHF_FH_JSI10Kac_6	72.652	51.875			0.39788	0.46492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39788	0.46492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11762000	8606800	3155000	0	0	0	11762000	8606800	3155000	0	0	0	0	0	0	32005	4337	30288	198169	268119	268119			1	
LLHINATALLEYPEYSGPLLPASAVAPGPSALDRK	1	Unmodified	3643.9614	0.96138324	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.125	85.405	4	0.018422	48684	160513_QHF_FH_JSI10Kac_6	29.583	24.475			0.66334	0.75817	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66334	0.75817	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59326000	29130000	30196000	0	0	0	59326000	29130000	30196000	0	0	0	0	0	0	32006	3955	30289	198170	268120	268120			0	
LLHIVGYGDFQMK	1	Unmodified	1519.7857	0.78572048	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.58		1	6						7	4	3	3	4	73.785	69.347	2;3	1.0676E-06	37609	160513_QHF_FH_JSI10Kac_6	133.81	97.848			0.92689	0.93973	33.521	14	8	Median	0.92272	0.79238	24.568	4	4	Linear	0.91897	1.0902	24.269	3	1	Plateau	0.92475	0.85292	32.969	3	1	Median	1.1063	1.1662	16.541	4	2	Median	1040600000	500060000	540520000	245700000	125930000	119780000	265400000	127100000	138300000	272440000	134690000	137750000	257030000	112340000	144690000	32007	2795	30290	198171;198172;198173;198174;198175;198176;198177;198178;198179;198180;198181;198182;198183;198184	268121;268122;268123;268124;268125;268126;268127;268128;268129;268130;268131;268132;268133;268134;268135;268136;268137;268138;268139	268139			19	
LLHIVGYGDFQMK	1	Oxidation (M)	1535.7806	0.7806351	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	68.978	59.648	3	0.00035563	31648	160513_QHF_FH_JSI9Kac_6	71.176	66.374			1.186	0.99689	39.431	3	0	Plateau	1.186	0.99689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0499	1.0024	NaN	1	0	Median	1.8578	1.979	NaN	1	0	Median	147260000	83239000	64024000	59247000	33132000	26115000	0	0	0	47588000	31048000	16539000	40428000	19059000	21370000	32008	2795	30290	198185;198186;198187	268140;268141;268142	268141		2143	3	
LLHIYYQNSIDDK	1	Unmodified	1620.8148	0.814772	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	2	3	4	4	56.463	50.586	2;3	3.2388E-09	27742	160513_QHF_FH_JSI10Kac_6	151.15	124.47			0.92342	0.97068	33.428	13	10	Median	2.3927	2.0104	24.302	2	1	Median	0.91577	1.0614	10.317	3	2	Plateau	1.1414	1.0805	22.111	4	4	Median	0.78976	0.8134	14.088	4	3	Median	1129900000	568000000	561860000	61338000	15011000	46327000	334600000	178750000	155850000	375760000	192610000	183150000	358160000	181630000	176530000	32009	2789	30291	198188;198189;198190;198191;198192;198193;198194;198195;198196;198197;198198;198199;198200	268143;268144;268145;268146;268147;268148;268149;268150;268151;268152;268153;268154;268155;268156;268157;268158	268158			16	
LLHIYYQNSIDDR	0	Unmodified	1648.8209	0.82092001	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			59.213	50.423	2	0.0012852	26812	160513_QHF_FH_JSI9Kac_6	96.89	79.864			0.64325	0.65005	10.276	2	2	Median	0.71202	0.60449	NaN	1	1	Median	0.58111	0.69904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40466000	20242000	20224000	8427600	4367700	4060000	32039000	15875000	16164000	0	0	0	0	0	0	32010	4988	30292	198201;198202;198203	268159;268160;268161	268159			3	
LLHLPLSLTALK	1	Unmodified	1317.8384	0.83840797	4421	Q9BTT6	LRRC1	Leucine-rich repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	88.671	88.086	3	0.00015594	76232	160511_QHF_FH_JSI12i_3	79.82	68.288			0.60526	0.64007	28.259	4	4	Median	0.54233	0.46987	NaN	1	1	Median	0.62448	0.72849	NaN	1	1	Median	0.58664	0.56238	NaN	1	1	Median	0.86395	0.89269	NaN	1	1	Median	49886000	28072000	21814000	5506500	3314200	2192300	10044000	5606700	4437300	10300000	5754600	4545800	24035000	13396000	10639000	32011	4421	30293	198204;198205;198206;198207	268162;268163;268164;268165;268166	268166			5	
LLHLSAGQR	0	Unmodified	993.57196	0.57196295	1521	P41273	TNFSF9	Tumor necrosis factor ligand superfamily member 9	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				21.865	20.595	3	0.0034715	16526	160511_QHF_FH_JSI9i_3	46.462	37.599			1.3138	1.0692	NaN	1	1	Median	1.3138	1.0692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62813000	33875000	28938000	62813000	33875000	28938000	0	0	0	0	0	0	0	0	0	32012	1521	30294	198208	268167	268167			1	
LLHLVWTHAR	0	Unmodified	1244.7142	0.71421051	5467	Q9UPT9	USP22	Ubiquitin carboxyl-terminal hydrolase 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									16	3	7	2	4	55.573	46.337	2;3;4	3.6913E-07	25339	160513_QHF_FH_JSI10Kac_6	120.68	111.49			1.0948	1.0549	24.575	14	4	Median	1.3689	1.1833	9.3111	3	1	Plateau	0.79175	0.9077	33.306	5	1	Median	1.3189	1.2779	7.0815	2	1	Median	0.97645	1.0549	21.114	4	1	Median	436590000	220180000	216410000	61614000	26999000	34615000	264280000	144380000	119900000	37608000	14620000	22987000	73086000	34176000	38910000	32013	5467	30295	198209;198210;198211;198212;198213;198214;198215;198216;198217;198218;198219;198220;198221;198222;198223;198224	268168;268169;268170;268171;268172;268173;268174;268175;268176;268177;268178;268179;268180;268181;268182;268183;268184;268185;268186	268182			17	
LLHMLLSLWK	1	Unmodified	1252.7366	0.73658544	3433	Q8IWY9	CDAN1	Codanin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.121	79.453	3	0.00010914	44451	160513_QHF_FH_JSI10Kac_6	90.15	77.937			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10469000	0	10469000	0	0	0	10469000	0	10469000	0	0	0	0	0	0	32014	3433	30296	198225	268187	268187			1	
LLHPFVFGQYR	0	Unmodified	1375.7401	0.74009091	3704	Q8TCE6;Q6NSW5	FAM45A;FAM45B	Protein FAM45A;Protein FAM45B	yes	no	0	0	0	0		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	73.286	64.531	3	0.0019622	33807	160513_QHF_FH_JSI12Kac_6	40.727	35.243			1.0663	1.2334	28.585	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0663	1.2334	NaN	1	0	Median	1.6197	1.5692	NaN	1	0	Median	0.80355	0.88793	NaN	1	0	Median	91821000	44636000	47185000	0	0	0	54473000	29837000	24636000	22982000	7608000	15374000	14366000	7191000	7175500	32015	3704	30297	198226;198227;198228	268188;268189	268189			2	
LLHPPSHWPLIK	1	Unmodified	1436.8292	0.82924027	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	61.664	60.705	3;4	7.3651E-05	50749	160511_QHF_FH_JSI9i_3	71.555	58.788			1.0075	0.93376	21.32	4	0	Median	0.96947	0.79943	NaN	1	0	Median	0.68374	0.8021	NaN	1	0	Median	1.2754	1.2141	NaN	1	0	Median	1.0471	1.087	NaN	1	0	Median	271360000	140690000	130670000	46375000	19412000	26963000	44799000	25580000	19219000	65000000	31074000	33926000	115180000	64623000	50559000	32016	1422	30298	198229;198230;198231;198232;198233;198234	268190;268191;268192;268193;268194;268195;268196;268197;268198;268199;268200;268201;268202;268203;268204;268205;268206	268201			17	
LLHPSPDLVSQEATLSEAR	0	Unmodified	2062.0695	0.069483134	3455	Q8IY22	CMIP	C-Maf-inducing protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	62.358	62.217	3	3.7681E-09	53662	160511_QHF_FH_JSI12i_3	111.01	101.96			1.0207	1.0123	26.216	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82936	0.80045	31.705	2	1	Median	1.0868	1.0929	9.3267	2	2	Median	985890000	486970000	498920000	0	0	0	0	0	0	780970000	389520000	391450000	204920000	97452000	107470000	32017	3455	30299	198235;198236;198237;198238	268207;268208;268209;268210	268210			4	
LLHSENYVTK	1	Unmodified	1202.6295	0.62953741	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	20.295	20.109	2;3	0.00038022	16883	160511_QHF_FH_JSI11i_3	76.068	67.555			0.84865	0.73525	22.596	5	5	Median	0.84865	0.73525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97868	0.91837	34.553	2	2	Median	0.78649	0.79654	21.514	2	2	Median	413590000	248520000	165070000	12078000	8339800	3737900	0	0	0	172800000	96220000	76576000	228720000	143960000	84754000	32018	5561	30300	198239;198240;198241;198242;198243	268211;268212;268213;268214;268215	268212			5	
LLHSFLAK	1	Unmodified	927.55419	0.55418762	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							4	2	1	3	38.136	37.198	2;3	0.00043098	30242	160511_QHF_FH_JSI9i_3	94.302	70.147			3.4573	3.7965	115.25	10	10	Median	2.3347	1.8943	106.54	4	4	Median	1.3664	1.5779	113.52	2	2	Median	15.077	14.136	NaN	1	1	Median	4.0004	4.0932	130.33	3	3	Median	1986500000	687960000	1298500000	982860000	382120000	600740000	203980000	92969000	111010000	160820000	14656000	146170000	638790000	198220000	440570000	32019	5552	30301	198244;198245;198246;198247;198248;198249;198250;198251;198252;198253	268216;268217;268218;268219;268220;268221;268222;268223;268224;268225;268226	268219			11	
LLHSPLFQLLIQHLR	0	Unmodified	1827.0883	0.088308503	4001	Q96C45	ULK4	Serine/threonine-protein kinase ULK4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.18	84.459	4	0.00013089	47987	160513_QHF_FH_JSI10Kac_6	106.58	89.296			0.60891	0.73408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60891	0.73408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20303000	11366000	8937400	0	0	0	20303000	11366000	8937400	0	0	0	0	0	0	32020	4001	30302	198254	268227	268227			1	
LLHSPPDMLAPLAQR	0	Unmodified	1657.8974	0.89739619	3485	Q8IZP9	GPR64	G-protein coupled receptor 64	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							3	2	1	1	68.194	67.365	3	2.1626E-07	58287	160511_QHF_FH_JSI12i_3	114.7	96.292			1.0141	1.0041	30.592	6	2	Median	1.7551	1.4639	26.681	2	1	Median	0.69506	0.82656	23.167	2	1	Median	1.1156	1.0356	NaN	1	0	Median	0.92183	0.957	NaN	1	0	Median	433450000	223240000	210210000	63138000	26615000	36524000	98358000	54382000	43976000	156710000	85487000	71220000	115250000	56757000	58493000	32021	3485	30303	198255;198256;198257;198258;198259;198260;198261	268228;268229;268230;268231;268232;268233;268234;268235;268236;268237	268237			10	
LLHTLEGHAMPIR	0	Unmodified	1486.8079	0.8078529	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	4.59		1	11						2	4	4	4	2	43.5	41.418	2;3;4	6.8906E-07	34588	160511_QHF_FH_JSI12i_3	126.66	116.87			1.302	1.0815	27.559	13	4	Median	1.3036	1.0623	21.26	4	0	Median	0.74339	0.88046	31.543	4	2	Median	1.1822	1.1535	24.087	3	2	Plateau	1.2134	1.2401	23.353	2	0	Median	2085900000	1008700000	1077200000	418630000	185180000	233450000	355440000	164930000	190500000	592510000	302200000	290310000	719300000	356380000	362920000	32022	4605	30304	198262;198263;198264;198265;198266;198267;198268;198269;198270;198271;198272;198273;198274;198275	268238;268239;268240;268241;268242;268243;268244;268245;268246;268247;268248;268249;268250;268251;268252;268253;268254;268255;268256;268257;268258;268259;268260	268257			22	
LLHTLEGHAMPIR	0	Oxidation (M)	1502.8028	0.80276752	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			31.368	29.985	4	0.014069	24389	160511_QHF_FH_JSI9i_3	35.077	30.186			1.855	1.7742	28.437	2	0	Median	1.8057	1.451	NaN	1	0	Median	1.9056	2.1693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94089000	47143000	46946000	57973000	30834000	27139000	36116000	16309000	19807000	0	0	0	0	0	0	32023	4605	30304	198276;198277	268261	268261		2499	1	
LLHTMNVPSLFSK	1	Unmodified	1485.8014	0.80137054	5008	Q9NUP1	BLOC1S4	Biogenesis of lysosome-related organelles complex 1 subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	72.104	71.299	3	0.0014476	59886	160511_QHF_FH_JSI10i_3	52.891	47.285			0.9769	0.85662	14.488	4	0	Median	1.0605	0.86502	NaN	1	0	Median	0.6574	0.7565	NaN	1	0	Median	0.90085	0.8483	NaN	1	0	Median	1.0594	1.0707	NaN	1	0	Median	401640000	210420000	191220000	87393000	38014000	49379000	51487000	30270000	21217000	122760000	65809000	56953000	140000000	76329000	63667000	32024	5008	30305	198278;198279;198280;198281	268262;268263;268264	268262			2	
LLHTQYHAVEK	1	Unmodified	1337.7092	0.70918471	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	16.555	15.868	2;3	0.00056689	12689	160511_QHF_FH_JSI11i_3	76.465	45.236			0.75629	0.78537	24.068	3	2	Median	1.3661	1.1177	NaN	1	1	Median	0.61707	0.70566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75629	0.78537	NaN	1	1	Median	106630000	51998000	54633000	23515000	7079200	16436000	23690000	13963000	9726500	0	0	0	59426000	30955000	28471000	32025	4747	30306	198282;198283;198284;198285;198286	268265;268266;268267;268268;268269	268265			5	
LLHVAVSDVNDDVR	0	Unmodified	1550.8053	0.80526994	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	47.368	47.126	2	0.00059678	40214	160511_QHF_FH_JSI12i_3	91.03	75.139			1.4148	1.447	38.363	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4148	1.447	38.363	2	2	Median	52665000	25480000	27185000	0	0	0	0	0	0	0	0	0	52665000	25480000	27185000	32026	4272	30307	198287;198288	268270;268271	268270			2	
LLHVAVSDVNDDVRR	0	Unmodified	1706.9064	0.90638097	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	8.57	6.43			8						6	6	4	3	1	45.256	40.962	2;3;4	3.0987E-11	22449	160513_QHF_FH_JSI10Kac_6	119.32	112.28			1.1004	1.0385	32.579	12	0	Median	1.1938	1.0184	31.977	5	0	Median	1.2297	1.3032	23.59	3	0	Plateau	0.83975	0.79634	33.446	3	0	Median	1.1083	1.1943	NaN	1	0	Median	753060000	338290000	414770000	327650000	117540000	210110000	323970000	158300000	165670000	94924000	58848000	36076000	6519500	3601600	2917900	32027	4272	30308	198289;198290;198291;198292;198293;198294;198295;198296;198297;198298;198299;198300;198301;198302	268272;268273;268274;268275;268276;268277;268278;268279;268280;268281	268280			9	
LLHWGSHPTAFVVSYAAALPAAALWHK	1	Unmodified	2913.5442	0.54423864	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	90.598	82.45	4;5	1.9892E-28	47367	160513_QHF_FH_JSI10Kac_6	127.05	114.37			1.0278	0.92947	30.747	7	0	Median	1.053	0.89537	5.2863	2	0	Median	0.5879	0.7	1.1902	2	0	Median	1.5302	1.4459	7.8777	2	0	Median	1.0221	1.0987	NaN	1	0	Median	1584600000	837000000	747640000	318190000	154440000	163750000	929610000	535690000	393930000	185720000	74903000	110810000	151120000	71966000	79153000	32028	2211	30309	198303;198304;198305;198306;198307;198308;198309	268282;268283;268284;268285;268286;268287;268288;268289;268290	268288			9	
LLHYAGEVTYSVTGFLDK	1	Unmodified	2012.0255	0.025493054	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.401	85.229	3	4.3106E-07	73973	160511_QHF_FH_JSI12i_3	106.36	96.257			0.38157	0.38245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38157	0.38245	NaN	1	1	Median	52881000	36427000	16454000	0	0	0	0	0	0	0	0	0	52881000	36427000	16454000	32029	100	30310	198310	268291;268292;268293	268292			3	
LLHYLGHVMVNGPTTPIPVK	1	Unmodified	2185.2082	0.20816564	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.45			14						11	6	9	5	5	74.436	70.195	2;3;4	9.8499E-26	36840	160513_QHF_FH_JSI10Kac_6	205.31	157.76			1.1826	1.2838	84.738	23	18	Median	1.6088	1.3067	93.037	6	4	Median	1.0797	1.2838	62.54	9	6	Median	1.2874	1.235	79.037	4	4	Median	1.2071	1.2657	140.49	4	4	Median	2123500000	1017000000	1106600000	545900000	203280000	342620000	938160000	483850000	454310000	359650000	167060000	192580000	279840000	162770000	117080000	32030	1002	30311	198311;198312;198313;198314;198315;198316;198317;198318;198319;198320;198321;198322;198323;198324;198325;198326;198327;198328;198329;198330;198331;198332;198333;198334;198335	268294;268295;268296;268297;268298;268299;268300;268301;268302;268303;268304;268305;268306;268307;268308;268309;268310;268311;268312;268313;268314;268315;268316;268317;268318;268319;268320;268321;268322;268323;268324;268325;268326;268327;268328;268329;268330;268331	268330			38	
LLHYLGHVMVNGPTTPIPVK	1	Oxidation (M)	2201.2031	0.20308026	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	13.1	5.4			2						7	5	2		2	71.142	64.035	3;4	3.1874E-05	55534	160511_QHF_FH_JSI10i_3	59.728	50.681			0.83617	0.90857	67.301	7	5	Median	1.1218	0.95383	39.542	3	2	Median	0.56598	0.64852	41.33	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7084	1.8507	100.61	2	2	Median	259490000	134030000	125460000	145660000	68815000	76849000	68868000	49664000	19204000	0	0	0	44959000	15548000	29411000	32031	1002	30311	198336;198337;198338;198339;198340;198341;198342;198343;198344	268332;268333;268334;268335;268336;268337;268338;268339;268340	268332		580	9	
LLIAAQK	1	Unmodified	755.49052	0.49052473	622;533	O75477;O94905	ERLIN1;ERLIN2	Erlin-1;Erlin-2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	29.002	28.136	2	0.049013	23688	160511_QHF_FH_JSI12i_2	43.066	15.899			1.2216	1.2509	20.286	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70319	0.85437	NaN	1	0	Median	1.2216	1.2509	NaN	1	0	Median	1.0384	1.1658	NaN	1	0	Median	493990000	282360000	211630000	0	0	0	140310000	88140000	52169000	192860000	105860000	87002000	160820000	88359000	72462000	32032	533;622	30312	198345;198346;198347	268341;268342;268343;268344	268341			4	
LLIAFQNR	0	Unmodified	973.5709	0.57090032	114	O00257	CBX4	E3 SUMO-protein ligase CBX4	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	64.758	55.581	2	0.0010071	30658	160513_QHF_FH_JSI10Kac_6	103.28	66.263			0.90106	0.922	1.3471	4	0	Median	1.0877	0.93899	NaN	1	0	Median	0.7694	0.91009	NaN	1	0	Median	0.95596	0.91747	NaN	1	0	Median	0.84932	0.92656	NaN	1	0	Median	57318000	30798000	26520000	10937000	5420100	5516600	30360000	17417000	12944000	10775000	5593300	5181300	5246400	2367600	2878900	32033	114	30313	198348;198349;198350;198351	268345	268345			1	
LLIAGTNSSDLQQILSLLESNK	1	Unmodified	2356.285	0.28495522	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		2	3						2	2	1	3	1	101.3	98.632	3	4.4819E-103	89305	160511_QHF_FH_JSI12i_3	263.22	252.46			1.1088	1.0586	20.336	7	3	Median	1.1517	0.9731	25.308	2	1	Median	0.77433	0.93623	NaN	1	0	Median	1.1088	1.0586	27.893	3	2	Median	1.144	1.1556	NaN	1	0	Median	557850000	270280000	287570000	130650000	59957000	70689000	43161000	26229000	16932000	212610000	102220000	110390000	171430000	81870000	89557000	32034	895	30314	198352;198353;198354;198355;198356;198357;198358	268346;268347;268348;268349;268350;268351;268352;268353	268353			8	
LLIALLESNQQK	1	Unmodified	1368.7977	0.79766537	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	77.945	77.679	2;3	1.0265E-05	67434	160511_QHF_FH_JSI12i_3	125.48	82.234			1.9274	1.9948	23.139	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9274	1.9948	23.139	2	2	Median	65121000	21989000	43132000	0	0	0	0	0	0	0	0	0	65121000	21989000	43132000	32035	4889	30315	198359;198360	268354;268355	268354			2	
LLIDEAILK	1	Unmodified	1026.6325	0.63249752	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.25	6.04	2	4	2				1	3		1	3	4	4	77.341	73.499	2	9.3602E-05	66630	160511_QHF_FH_JSI10i_2	94.302	44.263			0.93524	0.95569	25.447	12	2	Median	1.1089	0.92833	NaN	1	0	Median	0.9414	1.1574	12.494	3	0	Plateau	0.99318	0.98642	27.473	4	1	Median	0.84416	0.94338	35.597	4	1	Median	1477300000	749370000	727950000	220810000	108940000	111870000	350810000	203470000	147340000	559580000	262340000	297230000	346130000	174620000	171510000	32036	1667	30316	198361;198362;198363;198364;198365;198366;198367;198368;198369;198370;198371;198372	268356;268357;268358;268359;268360;268361;268362;268363;268364;268365;268366	268363			11	
LLIEMEQR	0	Unmodified	1030.5481	0.54811597	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	6.6	1	4	2					4	2	3	3	4	3	52.878	47.871	2	0.00015009	41171	160511_QHF_FH_JSI12i_2	124.83	76.593			1.0587	1.0998	30.073	13	5	Median	1.3059	1.0896	30.672	3	1	Median	1.0189	1.2475	21.376	3	1	Plateau	0.95126	1.1444	12.758	4	2	Linear	1.3551	1.5004	45.902	3	1	Median	2916500000	1335600000	1580900000	455610000	196450000	259160000	632740000	304390000	328350000	998560000	461760000	536800000	829600000	372970000	456630000	32037	1017	30317	198373;198374;198375;198376;198377;198378;198379;198380;198381;198382;198383;198384;198385	268367;268368;268369;268370;268371;268372;268373;268374;268375;268376;268377;268378;268379;268380;268381	268370			15	
LLIEMEQRLEQGQAIDDLMPAQK	1	Unmodified	2668.3564	0.35642238	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	92.252	92.209	3	3.2106E-08	79958	160511_QHF_FH_JSI12i_3	94.057	78.358			1.1735	1.2606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1735	1.2606	NaN	1	1	Median	20100000	7108600	12991000	0	0	0	0	0	0	0	0	0	20100000	7108600	12991000	32038	1017	30318	198386	268382	268382			1	
LLIESLEK	1	Unmodified	943.559	0.55899823	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.289	57.355	2	0.0068347	50688	160511_QHF_FH_JSI10i_2	70.525	11.92			0.38227	0.42657	10.198	4	4	Median	0.55599	0.50274	NaN	1	1	Median	0.35249	0.43779	NaN	1	1	Median	0.3884	0.39736	NaN	1	1	Median	0.37625	0.41563	NaN	1	1	Median	259210000	147310000	111910000	47204000	24625000	22579000	60624000	35091000	25533000	95792000	53119000	42673000	55593000	34471000	21122000	32039	3699	30319	198387;198388;198389;198390	268383;268384;268385;268386	268386			4	
LLIFIIPGNPGFSAFYVPFAK	1	Unmodified	2310.2816	0.28164816	4755	Q9H6V9	C2orf43	UPF0554 protein C2orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	2	1	1	100.37	92.118	2;3	9.0185E-18	52682	160513_QHF_FH_JSI9Kac_6	178.58	148.65			1.1568	1.0156	17.486	7	2	Median	1.4968	1.295	18.099	3	2	Median	0.81984	0.96521	0.047156	2	0	Median	1.0008	0.93942	NaN	1	0	Median	1.1568	1.2531	NaN	1	0	Median	581490000	264880000	316620000	252890000	97561000	155330000	189770000	100300000	89474000	76714000	34334000	42379000	62117000	32684000	29433000	32040	4755	30320	198391;198392;198393;198394;198395;198396;198397	268387;268388;268389;268390;268391;268392;268393;268394;268395;268396;268397;268398	268391			12	
LLIGADGHNSGVR	0	Unmodified	1307.6946	0.69459728	5550	Q9Y2Z9	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	28.309	28.286	3	0.007847	24338	160511_QHF_FH_JSI11i_3	30.998	22.044			1.1087	1.0591	23.942	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3674	1.2544	NaN	1	0	Median	0.89889	0.89413	NaN	1	0	Median	148980000	64565000	84411000	0	0	0	0	0	0	71758000	30856000	40903000	77218000	33709000	43509000	32041	5550	30321	198398;198399	268399	268399			1	
LLIGTLYHR	0	Unmodified	1084.6393	0.63931423	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	3	5	3	3	57.162	50.4	2;3	2.3332E-43	27507	160513_QHF_FH_JSI11Kac_6	208.59	135.55			0.95624	0.95078	29.21	14	2	Median	1.1272	0.92594	7.8071	3	0	Median	0.77546	0.90691	45.323	5	1	Median	1.3544	1.2676	25.749	3	0	Median	0.91104	0.97629	17.874	3	1	Median	9779400000	4620100000	5159200000	1360200000	744630000	615610000	5654300000	2654800000	2999500000	1904300000	849930000	1054300000	860610000	370810000	489810000	32042	2639	30322	198400;198401;198402;198403;198404;198405;198406;198407;198408;198409;198410;198411;198412;198413	268400;268401;268402;268403;268404;268405;268406;268407;268408;268409;268410;268411;268412;268413;268414;268415;268416;268417;268418;268419;268420	268406			21	
LLIHLPLDK	1	Unmodified	1060.6645	0.66446635	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.661	69.852	3	0.00061016	57478	160511_QHF_FH_JSI9i_3	64.04	56.395			1.0676	1.1312	15.049	4	0	Median	1.3593	1.1644	NaN	1	0	Median	0.96399	1.099	NaN	1	0	Median	0.90557	0.86735	NaN	1	0	Median	1.1823	1.2152	NaN	1	0	Median	103770000	54088000	49678000	9081400	3994700	5086700	14038000	8089100	5949300	30413000	16757000	13656000	50233000	25247000	24986000	32043	625	30323	198414;198415;198416;198417	268421;268422;268423;268424;268425;268426	268423			6	
LLIHQSLAGGIIGVK	1	Unmodified	1517.9293	0.92934824	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.13		7	22						13	10	10	10	12	71.401	68.27	2;3	6.1271E-160	56595	160511_QHF_FH_JSI9i_3	274	229.25			0.83145	0.82991	25.423	26	26	Median	0.69119	0.57617	20.997	6	6	Median	0.7248	0.85956	26.605	6	6	Median	0.88477	0.87268	12.778	6	6	Median	0.86232	0.86281	17.407	8	8	Median	37343000000	16426000000	20917000000	8059900000	3523800000	4536100000	9679300000	4375200000	5304100000	9831300000	4298500000	5532800000	9772400000	4228300000	5544100000	32044	1975	30324	198418;198419;198420;198421;198422;198423;198424;198425;198426;198427;198428;198429;198430;198431;198432;198433;198434;198435;198436;198437;198438;198439;198440;198441;198442;198443;198444;198445;198446;198447;198448;198449;198450;198451;198452;198453;198454;198455;198456;198457;198458;198459	268427;268428;268429;268430;268431;268432;268433;268434;268435;268436;268437;268438;268439;268440;268441;268442;268443;268444;268445;268446;268447;268448;268449;268450;268451;268452;268453;268454;268455;268456;268457;268458;268459;268460;268461;268462;268463;268464;268465;268466;268467;268468;268469;268470;268471;268472;268473;268474;268475;268476;268477;268478;268479;268480;268481;268482	268456			56	
LLIIASIGQLK	1	Unmodified	1167.7591	0.75909502	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	3	3	1	2	85.46	77.21	2	1.441E-13	42570	160513_QHF_FH_JSI11Kac_6	149.82	74.707			0.73522	0.73495	25.143	4	4	Median	0.86931	0.72898	NaN	1	1	Median	0.64359	0.74097	NaN	1	1	Median	0.51478	0.49375	NaN	1	1	Median	0.8399	0.8996	NaN	1	1	Median	551180000	319260000	231920000	190980000	97823000	93161000	183040000	107260000	75780000	112810000	79092000	33723000	64343000	35084000	29260000	32045	2712	30325	198460;198461;198462;198463;198464;198465;198466;198467;198468	268483;268484;268485;268486;268487;268488;268489;268490;268491	268484			9	
LLIIGTTSR	0	Unmodified	972.59678	0.59678072	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	58.662	48.906	2	0.0022788	26974	160513_QHF_FH_JSI10Kac_6	79.469	36.695			1.0703	1.1695	24.413	6	0	Median	1.6602	1.4169	18.933	2	0	Median	1.0152	1.2188	14.052	2	0	Median	0.8213	0.78735	NaN	1	0	Median	1.0185	1.0642	NaN	1	0	Median	645300000	350410000	294890000	180530000	82934000	97600000	316870000	187410000	129460000	111180000	60439000	50741000	36712000	19632000	17080000	32046	1586	30326	198469;198470;198471;198472;198473;198474	268492;268493;268494;268495;268496;268497;268498	268498			7	
LLIIIQNEDIAGFIHK	1	Unmodified	1836.0509	0.050919944	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.896	99.913	3	0.0019594	86583	160511_QHF_FH_JSI12i_3	50.155	45.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32047	5361	30327	198475	268499	268499			1	
LLILADMADVYK	1	Unmodified	1363.7421	0.74212433	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.42	1	6	1						1	1	4	2	2	94.944	94.025	2	1.8893E-06	45938	160513_QHF_FH_JSI10Kac_6	109.42	87.333			1.389	1.3312	72.614	8	7	Median	2.05	1.7745	NaN	1	1	Median	0.46468	0.53715	94.06	3	3	Plateau	1.0597	1.0875	106.93	2	2	Median	1.389	1.4966	57.198	2	1	Median	485310000	267210000	218110000	48952000	16058000	32894000	147430000	93489000	53937000	194240000	110450000	83783000	94699000	47208000	47492000	32048	1421	30328	198476;198477;198478;198479;198480;198481;198482;198483;198484	268500;268501;268502;268503;268504;268505;268506;268507;268508;268509;268510	268510			11	
LLILALER	0	Unmodified	939.6117	0.6117025	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	78.399	73.87	2	0.00081956	66073	160511_QHF_FH_JSI12i_3	97.798	58.58			0.96128	1.0032	17.343	8	0	Median	1.2164	1.0243	35.535	2	0	Median	0.92465	1.0889	9.276	2	0	Median	1.0953	1.0216	4.8936	2	0	Median	0.84363	0.87048	13.515	2	0	Median	916830000	462900000	453930000	195440000	89865000	105570000	395070000	206120000	188950000	143170000	66332000	76834000	183150000	100580000	82569000	32049	3101	30329	198485;198486;198487;198488;198489;198490;198491;198492	268511;268512;268513;268514;268515;268516;268517;268518;268519;268520	268518			10	
LLILEYAR	0	Unmodified	989.59097	0.59096706	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.81		4	1					1	4	3	2	3	2	73.539	67.621	2	0.00090853	37053	160513_QHF_FH_JSI10Kac_6	104.21	68.023			0.86128	0.89916	20.392	8	0	Median	1.2472	1.0748	8.4278	3	0	Plateau	0.77474	0.9349	26.729	2	0	Median	0.77581	0.76729	NaN	1	0	Median	0.67605	0.73601	22.588	2	0	Median	439680000	259880000	179800000	102610000	49695000	52920000	207650000	133380000	74270000	33803000	20196000	13607000	95620000	56612000	39007000	32050	387	30330	198493;198494;198495;198496;198497;198498;198499;198500;198501;198502	268521;268522;268523;268524;268525;268526;268527;268528;268529;268530;268531	268531			11	
LLILMEAR	0	Oxidation (M)	973.56304	0.56303775	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	1	2	1	61.116	51.556	2	0.0073648	27399	160513_QHF_FH_JSI9Kac_5	69.176	23.458			0.8645	0.98854	21.463	5	0	Median	0.95171	0.81245	37.865	2	0	Median	0.8645	1.0002	NaN	1	0	Median	1.0128	0.98854	NaN	1	0	Median	0.85394	0.90035	NaN	1	0	Median	214460000	106920000	107540000	78076000	35591000	42485000	52206000	27835000	24371000	31557000	14470000	17087000	52618000	29020000	23598000	32051	1520	30331	198503;198504;198505;198506;198507;198508	268532;268533;268534;268535;268536;268537;268538;268539;268540	268532		1197	9	
LLILMEAR	0	Unmodified	957.56812	0.56812313	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	75.194	65.752	2	0.0092315	34456	160513_QHF_FH_JSI12Kac_6	77.058	27.699			0.51639	0.54611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51639	0.54611	NaN	1	1	Median	279010000	230590000	48426000	0	0	0	0	0	0	0	0	0	279010000	230590000	48426000	32052	1520	30331	198509	268541	268541			1	
LLINLLK	1	Unmodified	825.56878	0.56877505	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	75.553	74.691	2	0.038396	61500	160511_QHF_FH_JSI9i_3	48.174	17.505			0.96226	0.86141	4.8461	2	0	Median	1.0447	0.83239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88633	0.89144	NaN	1	0	Median	147500000	74811000	72694000	53092000	28388000	24703000	0	0	0	0	0	0	94413000	46422000	47991000	32053	2588	30332	198510;198511	268542	268542			1	
LLIPVADGMNEMYLR	0	Unmodified	1733.8844	0.88444824	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	98.094	97.792	2	0.00070468	85587	160511_QHF_FH_JSI11i_2	78.908	55.057			0.841	0.93823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.841	0.93823	NaN	1	1	Median	15549000	10286000	5262800	0	0	0	0	0	0	0	0	0	15549000	10286000	5262800	32054	4363	30333	198512;198513	268543;268544	268544			2	
LLIPVAEGMNEIWLR	0	Unmodified	1752.9597	0.9596621	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	101.83	101.72	2;3	1.8374E-09	89605	160511_QHF_FH_JSI9i_2	137.81	125.45			0.92695	0.8811	17.489	7	1	Median	1.0779	0.91359	5.1207	2	0	Median	0.68322	0.84183	6.3938	2	0	Median	0.92695	0.95212	NaN	1	0	Median	0.89685	0.99392	38.447	2	1	Median	1641200000	888380000	752840000	245710000	106780000	138920000	370440000	225890000	144560000	502880000	247880000	255000000	522190000	307830000	214360000	32055	3965	30334	198514;198515;198516;198517;198518;198519;198520	268545;268546;268547;268548;268549;268550	268547			5	
LLIQAAIVR	0	Unmodified	995.64915	0.64915064	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.58			3					4	4	3	3	2	3	68.621	61.216	2	0.00032602	32396	160513_QHF_FH_JSI9Kac_6	99.799	41.605			0.99659	1.052	14.095	11	0	Median	1.1484	0.99251	19.601	3	0	Median	0.79196	0.9462	14.606	3	0	Median	0.99611	0.95825	14.352	2	0	Median	0.99249	1.0966	8.3689	3	0	Median	769580000	395220000	374360000	110650000	49077000	61573000	173610000	95220000	78392000	197610000	103810000	93797000	287710000	147110000	140600000	32056	2453	30335	198521;198522;198523;198524;198525;198526;198527;198528;198529;198530;198531	268551;268552;268553;268554;268555;268556;268557;268558;268559;268560;268561;268562;268563	268557			13	
LLIQVGHEPMPPTLGTNVLGR	0	Unmodified	2241.2304	0.23035765	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			88.81	87.658	3	0.0029183	72086	160511_QHF_FH_JSI9i_3	43.116	30.634			1.2203	1.0451	2.9841	3	1	Median	1.2349	1.0456	0.064758	2	1	Median	0.86993	0.99293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45574000	23052000	22522000	21963000	11112000	10851000	23611000	11940000	11671000	0	0	0	0	0	0	32057	5158	30336	198532;198533;198534;198535	268564;268565;268566;268567;268568	268567			4	
LLISHGLSLGHFLTPMR	0	Unmodified	1891.0502	0.050208437	3717	Q8TD43	TRPM4	Transient receptor potential cation channel subfamily M member 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.664	75.068	4	0.00031994	41223	160513_QHF_FH_JSI10Kac_6	118.24	101.93			0.70644	0.8076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70644	0.8076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83368000	52404000	30964000	0	0	0	83368000	52404000	30964000	0	0	0	0	0	0	32058	3717	30337	198536	268569	268569			1	
LLISHLSGIR	0	Unmodified	1107.6764	0.67642802	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			57.814	48.996	3	1.9952E-05	26932	160513_QHF_FH_JSI10Kac_6	99.568	76.249			0.91947	0.93009	42.098	2	0	Median	0.81128	0.69062	NaN	1	0	Median	1.0421	1.2526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68650000	34462000	34188000	26662000	16759000	9902500	41988000	17703000	24286000	0	0	0	0	0	0	32059	2118	30338	198537;198538	268570;268571;268572	268572			3	
LLISLSQGNRDESTNVDMSLAQR	0	Unmodified	2546.2759	0.27586387	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			73.081	71.633	3	0.011325	60073	160511_QHF_FH_JSI10i_3	20.891	12.994			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32060	1723	30339	198539	268573	268573			1	
LLITGTEQFNQKPK	2	Unmodified	1615.8934	0.89335667	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	46.737	46.616	3	5.5217E-05	39927	160511_QHF_FH_JSI12i_3	99.669	85.639			1.1152	1.0627	19.406	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0209	0.92642	NaN	1	0	Median	1.2183	1.219	NaN	1	0	Median	144710000	64363000	80347000	0	0	0	0	0	0	51999000	25378000	26621000	92711000	38985000	53726000	32061	3838	30340	198540;198541	268574;268575;268576	268575			3	
LLITGTPLQNSLK	1	Unmodified	1396.829	0.8289655	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.799	3	4	5							4	3	2	3	81.282	80.644	2	5.7475E-05	62456	160511_QHF_FH_JSI12i_3	108.47	47.497			1.0823	1.1174	17.8	11	2	Median	1.1695	0.96451	11.166	3	1	Median	0.97316	1.3212	17.064	3	1	Plateau	1.2137	1.1884	10.643	2	0	Median	1.0267	1.1562	24.547	3	0	Median	658100000	298400000	359700000	107850000	45486000	62368000	207520000	94505000	113010000	85664000	38209000	47455000	257070000	120200000	136870000	32062	183	30341	198542;198543;198544;198545;198546;198547;198548;198549;198550;198551;198552;198553	268577;268578;268579;268580;268581;268582;268583;268584;268585;268586;268587;268588;268589;268590;268591	268589			15	
LLIVSNPVDILTYVAWK	1	Unmodified	1943.1132	0.11318585	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.06	6.71		10	7	1					16	6	8	11	9	101.35	97.266	2;3	3.0598E-213	51857	160513_QHF_FH_JSI9Kac_6	316.93	0			0.9658	1.012	15.882	32	15	Median	1.322	1.1808	22.184	6	2	Median	0.82656	0.9956	9.6924	8	2	Median	1.1469	1.118	16.201	10	7	Median	0.91925	1.0188	6.9592	8	4	Median	152120000000	75360000000	76756000000	27974000000	12108000000	15865000000	25169000000	12936000000	12234000000	57796000000	28588000000	29208000000	41178000000	21728000000	19450000000	32063	761	30342	198554;198555;198556;198557;198558;198559;198560;198561;198562;198563;198564;198565;198566;198567;198568;198569;198570;198571;198572;198573;198574;198575;198576;198577;198578;198579;198580;198581;198582;198583;198584;198585;198586;198587	268592;268593;268594;268595;268596;268597;268598;268599;268600;268601;268602;268603;268604;268605;268606;268607;268608;268609;268610;268611;268612;268613;268614;268615;268616;268617;268618;268619;268620;268621;268622;268623;268624;268625;268626;268627;268628;268629;268630;268631;268632;268633;268634;268635;268636;268637;268638;268639	268623			48	
LLIVSNPVDILTYVAWKISGFPK	2	Unmodified	2572.4669	0.46688275	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	102.56	94.448	3	3.9602E-48	51333	160513_QHF_FH_JSI12Kac_6	182.39	162.24			0.80124	0.85641	19.419	3	0	Median	1.1492	1.0007	NaN	1	0	Median	0.56616	0.68026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80124	0.85641	NaN	1	0	Median	650800000	374700000	276100000	263590000	124270000	139320000	302430000	206080000	96354000	0	0	0	84779000	44348000	40430000	32064	761	30343	198588;198589;198590	268640;268641;268642;268643;268644;268645	268642			6	
LLIVSTTPYSEK	1	Unmodified	1349.7442	0.74423282	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.36	4	4	5			3	3	4	4	5	7	8	7	64.643	58.91	2	3.324E-12	50441	160511_QHF_FH_JSI12i_2	155.06	99.527			1.0203	0.9855	18.937	26	1	Median	1.0614	0.90561	6.2302	5	0	Median	0.85568	1.0142	17.983	7	0	Median	1.0468	1.0103	8.4475	7	1	Median	1.1722	1.2621	29.119	7	0	Median	3482900000	1647400000	1835500000	629470000	299070000	330400000	914450000	462260000	452190000	1196700000	542750000	653980000	742240000	343340000	398910000	32065	5487	30344	198591;198592;198593;198594;198595;198596;198597;198598;198599;198600;198601;198602;198603;198604;198605;198606;198607;198608;198609;198610;198611;198612;198613;198614;198615;198616;198617	268646;268647;268648;268649;268650;268651;268652;268653;268654;268655;268656;268657;268658;268659;268660;268661;268662;268663;268664;268665;268666;268667;268668;268669;268670;268671;268672;268673;268674;268675;268676;268677;268678;268679;268680;268681;268682;268683;268684;268685;268686;268687;268688	268650			42	
LLIYETEAK	1	Unmodified	1078.591	0.59102664	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	46.149	45.169	2	0.0036617	38771	160511_QHF_FH_JSI11i_2	59.35	34.456			1.0809	1.0788	7.1951	4	0	Median	1.1932	1.0396	NaN	1	0	Median	0.83409	1.019	NaN	1	0	Median	1.0943	1.1196	NaN	1	0	Median	1.0675	1.1922	NaN	1	0	Median	587960000	263000000	324960000	133610000	54100000	79506000	124750000	65610000	59144000	183630000	71998000	111630000	145970000	71292000	74680000	32066	1679	30345	198618;198619;198620;198621	268689;268690;268691;268692;268693	268691			5	
LLKHPNIVR	1	Acetyl (K)	1130.6924	0.69241244	2439;2440	Q13555;Q9UQM7;Q13557	CAMK2G;CAMK2A;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit alpha;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	1	0	0	1			By MS/MS		16	0									1			1		41.447	31.875	3	0.0024082	17493	160513_QHF_FH_JSI11Kac_6	59.153	46.537			0.24744	0.24284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24744	0.24284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19733000	15649000	4084200	0	0	0	0	0	0	19733000	15649000	4084200	0	0	0	32067	2439;2440	30346	198622	268694	268694	2477		1	
LLKPECVLDK	2	Unmodified	1213.674	0.67404476	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	41.93	41.856	3	0.0049746	36906	160511_QHF_FH_JSI11i_3	51.841	39.975			1.2676	1.175	95.838	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72366	0.66618	80.25	2	2	Median	2.5131	2.5384	NaN	1	1	Median	345810000	170350000	175460000	0	0	0	0	0	0	181240000	107720000	73521000	164570000	62629000	101940000	32068	3860	30347	198623;198624;198625	268695;268696;268697	268696			3	
LLKPGEEPSEYTDEEDTK	2	Unmodified	2078.9532	0.95317555	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	3	2	37.411	36.741	3	5.2524E-07	31883	160511_QHF_FH_JSI9i_2	103.1	87.949			0.88192	0.94769	44.168	8	6	Median	0.80053	0.68705	NaN	1	0	Median	0.75072	0.9233	11.826	2	2	Median	1.1292	1.0874	48.936	3	2	Median	0.74406	0.79569	64.183	2	2	Median	172900000	95048000	77849000	23665000	10734000	12931000	48797000	29340000	19457000	63936000	32728000	31208000	36500000	22246000	14254000	32069	262	30348	198626;198627;198628;198629;198630;198631;198632;198633	268698;268699;268700;268701;268702;268703;268704;268705;268706;268707;268708	268701			11	
LLKYYVLNALK	2	Acetyl (K)	1378.8224	0.82242356	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		88.407	79.078	2	0.001534	44182	160513_QHF_FH_JSI11Kac_6	82.645	67.016			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22490000	22490000	0	0	0	0	0	0	0	22490000	22490000	0	0	0	0	32070	3101	30349	198634	268709	268709	2770		1	
LLLAIVGQ	0	Unmodified	825.53239	0.53238955	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.02	6	5			1	7	5	3		3	7	8	9	80.677	73.703	1;2	3.2535E-05	39148	160513_QHF_FH_JSI10Kac_4	130.65	119.74			0.87069	0.95421	26.374	25	4	Median	1.5906	1.2643	1.0649	2	1	Median	0.84448	0.98955	23.697	6	1	Median	0.91618	0.89418	29.978	8	1	Median	0.87069	0.95421	27.857	9	1	Median	413410000	213800000	199610000	26635000	10525000	16111000	139610000	73319000	66292000	135560000	70336000	65219000	111610000	59619000	51990000	32071	1170	30350	198635;198636;198637;198638;198639;198640;198641;198642;198643;198644;198645;198646;198647;198648;198649;198650;198651;198652;198653;198654;198655;198656;198657;198658;198659;198660;198661	268710;268711;268712;268713;268714;268715;268716;268717;268718;268719;268720;268721;268722;268723;268724;268725;268726;268727;268728;268729;268730;268731;268732;268733;268734;268735;268736;268737;268738;268739;268740;268741;268742;268743	268720			29	
LLLALMESR	0	Unmodified	1044.6002	0.60015154	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			76.006	73.022	2	0.00016164	38824	160513_QHF_FH_JSI10Kac_6	95.815	0			1.1512	1.3732	22.507	3	2	Plateau	2.5318	2.0918	NaN	1	1	Median	1.2137	1.4236	5.1049	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130150000	50061000	80089000	22501000	8501100	14000000	107650000	41559000	66089000	0	0	0	0	0	0	32072	2547	30351	198662;198663;198664	268744;268745;268746	268746			3	
LLLAPSSK	1	Unmodified	827.51165	0.5116541	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			34.963	33.964	2	0.0078956	29917	160511_QHF_FH_JSI10i_2	58.119	21.934			1.0165	1.0363	0.79268	2	0	Median	1.2229	1.0305	NaN	1	0	Median	0.8449	1.0421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97597000	45510000	52087000	50332000	21119000	29214000	47265000	24391000	22874000	0	0	0	0	0	0	32073	4856	30352	198665;198666	268747	268747			1	
LLLAPSSKK	2	Unmodified	955.60662	0.60661712	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1	By MS/MS				3	0			3							3				24.387	23.067	2;3	0.015388	18584	160511_QHF_FH_JSI9i_3	52.716	6.9982			0.68038	0.5568	NaN	1	1	Median	0.68038	0.5568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61836000	28262000	33574000	61836000	28262000	33574000	0	0	0	0	0	0	0	0	0	32074	4856	30353	198667;198668;198669	268748;268749;268750	268749			3	
LLLATGHWK	1	Unmodified	1037.6022	0.60220045	3665	Q8NG68	TTL	Tubulin--tyrosine ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			6						3	2	2	3	2	48.936	46.192	3	0.0023054	25188	160513_QHF_FH_JSI11Kac_6	54.416	46.196			0.9224	0.88067	29.026	8	2	Median	1.0696	0.88286	NaN	1	0	Median	0.81208	0.94021	10.342	2	0	Median	0.97753	0.87848	17.663	3	1	Median	0.73136	0.74599	67.098	2	1	Median	289340000	148120000	141230000	32638000	11741000	20897000	57748000	32069000	25679000	90376000	40980000	49396000	108580000	63326000	45254000	32075	3665	30354	198670;198671;198672;198673;198674;198675;198676;198677;198678	268751;268752;268753;268754;268755;268756;268757;268758	268753			8	
LLLAVFVTPLTDLR	0	Unmodified	1569.9494	0.94941498	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	3	2	100.56	96.776	2	2.5333E-30	50751	160513_QHF_FH_JSI11Kac_6	168.69	144.65			1.0712	1.0173	22.118	9	5	Median	1.5759	1.3104	13.68	2	2	Median	0.89411	1.0412	4.1571	2	1	Median	1.087	1.0173	26.165	3	1	Plateau	1.0338	1.0637	16.599	2	1	Median	3505300000	1575800000	1929400000	718220000	298030000	420190000	800930000	401750000	399180000	1486600000	686330000	800220000	499560000	189710000	309850000	32076	1557	30355	198679;198680;198681;198682;198683;198684;198685;198686;198687	268759;268760;268761;268762;268763;268764;268765;268766;268767;268768	268763			10	
LLLAVLK	1	Unmodified	768.54731	0.54731133	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	68.217	67.622	2	0.015049	58559	160511_QHF_FH_JSI12i_3	65.263	0			0.93612	0.96061	31.189	3	2	Plateau	2.2029	1.7913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4183	1.2805	NaN	1	1	Median	0.93612	0.96061	NaN	1	0	Median	131310000	55278000	76037000	26906000	10434000	16472000	0	0	0	40230000	18788000	21443000	64178000	26056000	38122000	32077	1822	30356	198688;198689;198690	268769;268770;268771	268771			3	
LLLAYNSSAR	0	Unmodified	1106.6084	0.60840804	4115	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			51.072	42.464	2	0.024581	23417	160513_QHF_FH_JSI10Kac_6	49.418	33.537			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32078	4115	30357	198691	268772	268772			1	
LLLCGGAPLSATTQR	0	Unmodified	1556.8345	0.83446158	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	60.58	60.17	2	0.00010696	51651	160511_QHF_FH_JSI12i_3	101.95	74.839			0.85387	1.0327	18.484	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.61489	0.74813	NaN	1	1	Median	0.85387	0.81506	2.3468	2	1	Median	0.99171	1.135	NaN	1	0	Median	233420000	118750000	114670000	0	0	0	25156000	13593000	11563000	135040000	67200000	67839000	73221000	37957000	35264000	32079	707	30358	198692;198693;198694;198695	268773;268774;268775;268776;268777	268777			5	
LLLDDLVPTSR	0	Unmodified	1240.7027	0.70270235	3058	Q6IN84	MRM1	rRNA methyltransferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			82.117	81.451	2	0.024244	72499	160511_QHF_FH_JSI10i_2	48.602	18.347			0.9478	1.1587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9478	1.1587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38300000	20789000	17510000	0	0	0	38300000	20789000	17510000	0	0	0	0	0	0	32080	3058	30359	198696	268778	268778			1	
LLLDGAPLIAIHK	1	Unmodified	1372.8442	0.84422163	4638	Q9H0R4	HDHD2	Haloacid dehalogenase-like hydrolase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	81.499	81.007	3	4.3088E-05	72185	160511_QHF_FH_JSI11i_3	104.87	96.561			0.68169	0.66442	15.081	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68169	0.66442	4.8818	2	2	Median	0.69167	0.73218	23.753	2	2	Median	162900000	84527000	78370000	0	0	0	0	0	0	92936000	52907000	40029000	69961000	31620000	38341000	32081	4638	30360	198697;198698;198699;198700;198701;198702	268779;268780;268781;268782;268783;268784	268779			6	
LLLDGSFVELIR	0	Unmodified	1373.7919	0.79185171	5767				yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.14	100.06	2	0.004306	87896	160511_QHF_FH_JSI9i_2	55.567	19.623	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32082	5767	30361	198703	268785	268785			1	
LLLDHFANR	0	Unmodified	1097.5982	0.5981777	5419	Q9UM47	NOTCH3	Neurogenic locus notch homolog protein 3;Notch 3 extracellular truncation;Notch 3 intracellular domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	41.233	40.41	3	0.00023828	32972	160511_QHF_FH_JSI9i_3	62.823	0			1.1535	0.73997	18.458	4	0	Linear	1.2145	1.0096	NaN	1	0	Median	0.58447	0.68642	NaN	1	0	Median	0.85604	0.79769	NaN	1	0	Median	0.6658	0.67996	NaN	1	0	Median	255460000	142820000	112640000	74382000	37820000	36562000	53972000	30378000	23594000	67271000	35002000	32269000	59835000	39617000	20218000	32083	5419	30362	198704;198705;198706;198707	268786;268787;268788	268788			2	
LLLDIPLQTPHK	1	Unmodified	1386.8235	0.82348619	1685;31;191	P49792;A6NKT7;O14715;Q99666	RANBP2;RGPD3;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.391	75.783	3	3.9793E-08	65797	160511_QHF_FH_JSI12i_2	134.13	131.05			0.90804	0.92001	17.575	6	0	Median	0.96896	0.82465	NaN	1	0	Median	0.71082	0.89098	NaN	1	0	Median	0.99766	0.98277	19.91	2	0	Median	1.0315	1.1065	21.568	2	0	Median	751220000	354490000	396730000	82680000	40512000	42167000	104580000	52396000	52185000	292070000	134860000	157210000	271890000	126720000	145170000	32084	1685;31;191	30363	198708;198709;198710;198711;198712;198713	268789;268790;268791;268792;268793;268794;268795;268796;268797;268798;268799;268800;268801;268802;268803	268793			15	
LLLDNTQIMNALQK	1	Unmodified	1613.8811	0.88107742	394	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		88.573	88.045	2;3	1.3519E-14	78263	160511_QHF_FH_JSI10i_2	158.05	123.51			0.80669	0.9571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80669	0.9571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15571000	7261800	8309300	0	0	0	15571000	7261800	8309300	0	0	0	0	0	0	32085	394	30364	198714;198715	268804;268805	268805			2	
LLLDPEFTLLQR	0	Unmodified	1456.829	0.8289655	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	100.55	100.48	2	0.00024482	88935	160511_QHF_FH_JSI10i_2	77.677	28.31			0.57335	0.69016	50.312	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57335	0.69016	NaN	1	0	Median	1.0791	1.069	NaN	1	1	Median	1.7415	1.8826	NaN	1	1	Median	63340000	31806000	31534000	0	0	0	25790000	14526000	11264000	26237000	13568000	12670000	11312000	3712800	7599600	32086	4564	30365	198716;198717;198718;198719;198720	268806;268807;268808;268809;268810;268811	268809			6	
LLLDPSSPPTK	1	Unmodified	1166.6547	0.65468953	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	49.487	48.719	2	4.5305E-05	44288	160511_QHF_FH_JSI12i_1	103.55	33.548			0.78967	0.82687	18.664	3	1	Plateau	0.90693	0.74768	NaN	1	0	Median	0.68757	0.82687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0312	1.0734	NaN	1	1	Median	396800000	199130000	197680000	121270000	56985000	64281000	126380000	66967000	59413000	0	0	0	149160000	75173000	73984000	32087	3051	30366	198721;198722;198723	268812;268813	268812			2	
LLLDQEQK	1	Unmodified	985.54441	0.5444108	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	29.938	29.128	2	0.0050585	26107	160511_QHF_FH_JSI12i_1	66.799	25.497			1.4894	1.4655	48.939	7	3	Median	1.5999	1.3188	33.449	2	1	Median	1.4518	1.7372	81.422	2	1	Median	1.4894	1.4655	NaN	1	0	Median	1.3247	1.438	76.325	2	1	Median	1030200000	551130000	479100000	223680000	108590000	115090000	232260000	127440000	104810000	237120000	120840000	116290000	337170000	194270000	142910000	32088	587	30367	198724;198725;198726;198727;198728;198729;198730	268814;268815;268816;268817;268818;268819;268820;268821;268822;268823	268816			10	
LLLDQEQKK	2	Unmodified	1113.6394	0.63937381	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	20.602	20.603	2	0.00071018	16844	160511_QHF_FH_JSI12i_3	91.318	53.76			2.4739	2.5475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4739	2.5475	NaN	1	1	Median	23557000	3814200	19742000	0	0	0	0	0	0	0	0	0	23557000	3814200	19742000	32089	587	30368	198731;198732	268824;268825	268824			2	
LLLDQVQTVLGLLTGILETVWDK	1	Unmodified	2566.4622	0.4621913	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.11	101.39	3	2.7466E-08	60111	160513_QHF_FH_JSI10Kac_6	125.62	109.73			2.0519	2.468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0519	2.468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147210000	63294000	83916000	0	0	0	147210000	63294000	83916000	0	0	0	0	0	0	32090	4214	30369	198733	268826	268826			1	
LLLDTFEYQGLVK	1	Unmodified	1537.8392	0.83919583	3299	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.933	92.473	2	0.00013045	82029	160511_QHF_FH_JSI10i_2	109.42	78.855			0.71516	0.74485	14.453	4	4	Median	1.028	0.88015	NaN	1	1	Median	0.5296	0.65967	NaN	1	1	Median	0.80718	0.82437	NaN	1	1	Median	0.63364	0.673	NaN	1	1	Median	117200000	71499000	45702000	20445000	10414000	10031000	30027000	20164000	9863600	40330000	24932000	15398000	26399000	15990000	10409000	32091	3299	30370	198734;198735;198736;198737	268827;268828;268829;268830	268830			4	
LLLEAGADPTVQDSR	0	Unmodified	1583.8155	0.81550028	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		54.129	53.467	2	2.0165E-06	47436	160511_QHF_FH_JSI9i_1	125.54	105.33			0.85014	1.013	15.329	3	3	Plateau	1.1121	0.90093	NaN	1	1	Median	0.85014	1.013	NaN	1	1	Median	0.76736	0.7475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	148680000	79857000	68824000	42491000	20657000	21834000	60618000	33635000	26983000	45572000	25565000	20007000	0	0	0	32092	4792	30371	198738;198739;198740	268831;268832;268833	268833			3	
LLLEDLVK	1	Unmodified	941.57973	0.57973367	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		80.562	79.894	2	0.0064119	70222	160511_QHF_FH_JSI11i_2	62.659	34.13			0.9456	0.94055	44.52	3	2	Plateau	0.53102	0.46773	NaN	1	1	Median	0.87713	1.0699	NaN	1	1	Median	0.9456	0.94055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91579000	56703000	34876000	32502000	23739000	8763000	27055000	15577000	11479000	32021000	17387000	14634000	0	0	0	32093	2348	30372	198741;198742;198743	268834;268835;268836	268835			3	
LLLEEDENEESGSIK	1	Unmodified	1703.8101	0.81014013	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	50.362	49.779	2	4.2901E-21	44379	160511_QHF_FH_JSI9i_1	135.6	116.85			0.73503	0.76424	51.436	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49024	0.47362	NaN	1	1	Median	0.96604	1.0059	38.85	2	2	Median	99328000	57270000	42058000	0	0	0	0	0	0	28573000	20127000	8445500	70756000	37143000	33613000	32094	486	30373	198744;198745;198746;198747;198748;198749	268837;268838;268839;268840;268841;268842	268842			6	
LLLEFTDTSYEEK	1	Unmodified	1586.7716	0.77156978	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.799	3	4	5							4	3	2	3	75.729	74.966	2	1.0397E-40	64671	160511_QHF_FH_JSI12i_2	199.09	184.88			0.96543	1.0364	18.51	9	3	Median	1.1222	0.93528	16.719	2	1	Median	0.93979	1.1087	6.0488	2	1	Median	0.92627	0.91833	11.575	2	0	Median	0.96367	1.0364	29.713	3	1	Median	1413600000	671510000	742050000	271480000	108890000	162590000	166450000	87032000	79414000	522240000	247200000	275040000	453400000	228390000	225010000	32095	1188	30374	198750;198751;198752;198753;198754;198755;198756;198757;198758;198759;198760;198761	268843;268844;268845;268846;268847;268848;268849;268850;268851;268852;268853;268854;268855;268856;268857;268858;268859;268860;268861;268862	268843			20	
LLLEGISSTHVNHLR	0	Unmodified	1687.937	0.93695282	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	51.641	51.523	4	0.039918	45650	160511_QHF_FH_JSI11i_3	28.283	21.702			1.0662	1.0321	10.661	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2219	1.1129	NaN	1	0	Median	0.93037	0.95717	NaN	1	0	Median	56455000	20263000	36192000	0	0	0	0	0	0	32729000	11169000	21560000	23726000	9094100	14632000	32096	4944	30375	198762;198763	268863	268863			0	
LLLELLELLFDK	1	Unmodified	1457.8745	0.87451871	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.03	97.314	2	9.7172E-15	57515	160513_QHF_FH_JSI10Kac_6	133.89	83.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70189000	70189000	0	0	0	0	70189000	70189000	0	0	0	0	0	0	0	32097	3962	30376	198764;198765	268864;268865	268865			2	
LLLENYEEYAAR	0	Unmodified	1482.7355	0.73545904	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	66.436	65.506	2	4.173E-06	56354	160511_QHF_FH_JSI12i_2	123.88	112.73			0.91824	0.9714	7.9698	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0138	1.0277	NaN	1	1	Median	0.83169	0.91817	NaN	1	0	Median	254740000	138150000	116600000	0	0	0	0	0	0	177970000	98232000	79739000	76773000	39916000	36857000	32098	2761	30377	198766;198767	268866;268867;268868	268867			3	
LLLEQILNK	1	Unmodified	1082.6699	0.66994566	391	O43913	ORC5	Origin recognition complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	82.39	82.286	2	0.0012208	73453	160511_QHF_FH_JSI11i_3	78.77	30.015			1.0061	0.97663	57.827	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91784	0.84122	60.233	2	2	Median	1.2208	1.2217	70.79	2	2	Median	228320000	108940000	119370000	0	0	0	0	0	0	93980000	53490000	40490000	134340000	55455000	78881000	32099	391	30378	198768;198769;198770;198771	268869;268870;268871;268872	268869			4	
LLLETHLPSK	1	Unmodified	1149.6758	0.67575932	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5								2	3	3	49.225	48.609	2;3	1.3091E-05	42839	160511_QHF_FH_JSI11i_3	91.937	78.002			1.0975	1.0771	24.547	8	1	Median	NaN	NaN	NaN	0	0	Median	0.74747	0.89335	4.4845	2	0	Median	1.4048	1.3338	20.591	3	1	Plateau	1.3605	1.4114	31.277	3	0	Median	701840000	328620000	373220000	0	0	0	98032000	53434000	44597000	305120000	132480000	172640000	298690000	142700000	155990000	32100	153	30379	198772;198773;198774;198775;198776;198777;198778;198779	268873;268874;268875;268876;268877;268878;268879	268873			7	
LLLFAIQR	0	Unmodified	972.61204	0.61203685	2978	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.05	72.793	2	5.4089E-07	39287	160513_QHF_FH_JSI9Kac_6	141.55	64.959			1.031	1.0485	11.972	4	0	Median	1.078	0.91215	NaN	1	0	Median	0.99312	1.175	NaN	1	0	Median	1.0073	0.97432	NaN	1	0	Median	1.0552	1.1284	NaN	1	0	Median	534310000	261280000	273030000	125640000	55527000	70117000	250410000	132320000	118090000	102680000	48745000	53939000	55574000	24683000	30891000	32101	2978	30380	198780;198781;198782;198783	268880;268881;268882;268883;268884;268885;268886	268883			7	
LLLFDYDK	1	Unmodified	1025.5433	0.54334816	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				75.057	74.264	2	0.050268	65532	160511_QHF_FH_JSI9i_2	45.972	29.196			1.022	0.8746	NaN	1	1	Median	1.022	0.8746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87109000	47024000	40085000	87109000	47024000	40085000	0	0	0	0	0	0	0	0	0	32102	4615	30381	198784	268887	268887			1	
LLLGAGAVAYGVR	0	Unmodified	1258.7398	0.73975656	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.37	6.53		5	8					5	9	8	7	7	5	72.22	67.08	2;3	4.4937E-63	35898	160513_QHF_FH_JSI11Kac_6	227.92	176.06			0.93467	0.92159	15.198	27	0	Median	1.2638	1.0296	19.844	8	0	Median	0.738	0.88595	4.6019	7	0	Median	1.0791	1.0119	14.138	7	0	Median	0.84596	0.85148	15.134	5	0	Median	11220000000	5755500000	5464800000	2637800000	1090200000	1547500000	3325600000	1972600000	1352900000	3112800000	1507300000	1605500000	2144200000	1185400000	958790000	32103	4296	30382	198785;198786;198787;198788;198789;198790;198791;198792;198793;198794;198795;198796;198797;198798;198799;198800;198801;198802;198803;198804;198805;198806;198807;198808;198809;198810;198811	268888;268889;268890;268891;268892;268893;268894;268895;268896;268897;268898;268899;268900;268901;268902;268903;268904;268905;268906;268907;268908;268909;268910;268911;268912;268913;268914;268915;268916;268917;268918;268919;268920;268921;268922;268923;268924;268925;268926;268927;268928;268929;268930;268931;268932;268933;268934;268935;268936;268937;268938;268939	268903			51	
LLLGDLAPVR	0	Unmodified	1065.6546	0.65462995	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	75.577	74.687	2	6.7773E-08	65564	160511_QHF_FH_JSI11i_2	123.98	77.557			1.0845	1.1044	10.279	3	0	Median	1.3836	1.2166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0845	1.1044	NaN	1	0	Median	0.88583	0.99068	NaN	1	0	Median	458860000	189290000	269560000	129670000	47778000	81896000	0	0	0	220690000	89899000	130800000	108490000	51616000	56872000	32104	5014	30383	198812;198813;198814	268940;268941;268942;268943	268942			4	
LLLGTLHLPR	0	Unmodified	1131.7128	0.71281353	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	72.714	68.075	3	3.6433E-07	36999	160513_QHF_FH_JSI10Kac_6	123.63	115.98			0.90493	0.90265	11.606	8	0	Median	1.2112	1.006	17.436	2	0	Median	0.73292	0.86435	10.349	2	0	Median	0.92129	0.86267	8.5186	2	0	Median	0.85032	0.90876	12.177	2	0	Median	319530000	160810000	158720000	59384000	25695000	33689000	97473000	53508000	43965000	116300000	59404000	56894000	46377000	22203000	24174000	32105	4699	30384	198815;198816;198817;198818;198819;198820;198821;198822	268944;268945;268946;268947;268948;268949;268950;268951;268952;268953;268954;268955;268956;268957	268957			14	
LLLHLEELQMEHDIR	0	Unmodified	1887.9877	0.98766776	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	74.281	74.136	4	2.4347E-05	64338	160511_QHF_FH_JSI12i_3	99.481	88.041			1.197	1.1607	14.25	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1385	1.0495	NaN	1	0	Median	1.2586	1.2838	NaN	1	0	Median	68609000	40174000	28435000	0	0	0	0	0	0	31764000	20296000	11469000	36845000	19878000	16966000	32106	4856	30385	198823;198824	268958;268959;268960	268960			3	
LLLHLIQSK	1	Unmodified	1063.6754	0.67536539	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	11.7	6.13			1						2			1	2	58.331	53.269	3	0.001144	45299	160511_QHF_FH_JSI12i_3	64.485	51.906			0.70716	0.73469	42.091	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70716	0.73469	42.091	2	2	Median	59200000	35722000	23478000	0	0	0	0	0	0	0	0	0	59200000	35722000	23478000	32107	5472	30386	198825;198826;198827	268961;268962;268963	268962			3	
LLLIATGK	1	Unmodified	827.54804	0.54803961	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		61.615	52.565	2	0.02248	28002	160513_QHF_FH_JSI9Kac_6	63.565	12.599			0.95927	1.0238	25.046	3	1	Plateau	0.77767	0.66751	NaN	1	1	Median	0.87904	1.0361	NaN	1	0	Median	1.0468	1.0238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96190000	49488000	46702000	20361000	9524700	10836000	35327000	17018000	18309000	40501000	22945000	17556000	0	0	0	32108	4929	30387	198828;198829;198830	268964;268965;268966	268965			3	
LLLIFDYLLHQYSK	1	Unmodified	1764.9814	0.98144339	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.354	88.935	3	1.797E-17	50399	160513_QHF_FH_JSI9Kac_6	185.02	159.7			1.2513	1.1797	308.12	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2513	1.1797	308.12	2	2	Median	NaN	NaN	NaN	0	0	Median	1265600000	778330000	487310000	312140000	161220000	150920000	356540000	215780000	140770000	389140000	232940000	156200000	207820000	168400000	39420000	32109	2947	30388	198831;198832;198833;198834;198835;198836;198837;198838	268967;268968;268969;268970;268971;268972;268973;268974	268969			8	
LLLIGDSGVGK	1	Unmodified	1070.6336	0.63356015	2020;4642;1933;1927;1730;3909	P61026;P59190;Q9H0U4;Q92928;P61006;P62820;P51153;Q92930	RAB10;RAB15;RAB1B;RAB1C;RAB8A;RAB1A;RAB13;RAB8B	Ras-related protein Rab-10;Ras-related protein Rab-15;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-8A;Ras-related protein Rab-1A;Ras-related protein Rab-13;Ras-related protein Rab-8B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	5.87	4	2	4			1	9	10	3	7	9	9	8	66.055	58.419	2	1.2878E-14	32749	160513_QHF_FH_JSI11Kac_5	152.34	0			0.97284	0.94069	49.355	32	3	Median	1.1388	0.93905	16.424	7	0	Median	0.76062	0.89068	61.446	9	1	Median	0.96024	0.93866	53.73	9	2	Median	1.0017	1.0391	54.625	7	0	Median	6444900000	3273100000	3171800000	2192000000	1008900000	1183200000	1427000000	801330000	625640000	1948400000	1028400000	920070000	877470000	434570000	442900000	32110	1933;4642;1927;2020;1730;3909	30389	198839;198840;198841;198842;198843;198844;198845;198846;198847;198848;198849;198850;198851;198852;198853;198854;198855;198856;198857;198858;198859;198860;198861;198862;198863;198864;198865;198866;198867;198868;198869;198870;198871	268975;268976;268977;268978;268979;268980;268981;268982;268983;268984;268985;268986;268987;268988;268989;268990;268991;268992;268993;268994;268995;268996;268997;268998;268999;269000;269001;269002;269003;269004;269005;269006;269007;269008;269009;269010;269011;269012;269013;269014;269015;269016	269009			41	
LLLINNAGSLGDVSK	1	Unmodified	1512.8512	0.8511575	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.82	2	4	4					4		4	4	3	3	74.822	71.802	2	8.3673E-15	63273	160511_QHF_FH_JSI12i_3	162.6	126.66			1.0845	0.98997	12.75	13	0	Median	1.2057	0.98398	3.5498	4	0	Median	0.8452	0.98488	4.6784	4	0	Median	0.94127	0.91266	13.437	3	0	Plateau	1.0673	1.1444	34.16	2	0	Median	933510000	490230000	443290000	194190000	83523000	110670000	269650000	155530000	114130000	261570000	148960000	112620000	208100000	102220000	105880000	32111	1433	30390	198872;198873;198874;198875;198876;198877;198878;198879;198880;198881;198882;198883;198884;198885	269017;269018;269019;269020;269021;269022;269023;269024;269025;269026;269027;269028;269029;269030;269031;269032;269033;269034;269035;269036;269037;269038;269039;269040;269041;269042	269042			26	
LLLIPQGAILR	0	Unmodified	1205.786	0.78597847	5405	Q9ULM3	YEATS2	YEATS domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	90.062	89.297	2	0.0065837	74585	160511_QHF_FH_JSI10i_3	51.995	47.383			1.041	1.06	7.9144	3	0	Median	1.2313	1.06	NaN	1	0	Median	0.76807	0.93399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.041	1.0804	NaN	1	0	Median	29743000	12487000	17256000	6104800	2535700	3569100	6193700	3259500	2934200	0	0	0	17445000	6691800	10753000	32112	5405	30391	198886;198887;198888	269043;269044	269043			2	
LLLIQAFRPDR	0	Unmodified	1340.7929	0.79285476	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.638	69.231	3	1.5527E-07	37105	160513_QHF_FH_JSI9Kac_6	89.9	74.528			1.0189	1.0019	14.005	4	0	Median	1.304	1.105	NaN	1	0	Median	0.757	0.90846	NaN	1	0	Median	1.2388	1.1809	NaN	1	0	Median	0.83802	0.89298	NaN	1	0	Median	541450000	264550000	276900000	143270000	63598000	79670000	305750000	155430000	150310000	47797000	21275000	26523000	44644000	24248000	20396000	32113	2517	30392	198889;198890;198891;198892	269045;269046;269047;269048;269049;269050	269047			6	
LLLIWQHK	1	Unmodified	1049.6386	0.63858595	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	4	4	3	3	66.189	60.194	2;3	2.5617E-06	32779	160513_QHF_FH_JSI11Kac_6	132.09	112.1			1.1053	1.0423	46.338	14	4	Median	1.8092	1.4989	59.969	4	2	Median	0.80149	0.9195	65.902	4	2	Median	1.1063	1.0476	7.8938	3	0	Median	1.06	1.0773	4.4777	3	0	Plateau	3860100000	1738400000	2121600000	620380000	277530000	342860000	1354600000	639330000	715300000	1209200000	495140000	714040000	675870000	326460000	349410000	32114	2947	30393	198893;198894;198895;198896;198897;198898;198899;198900;198901;198902;198903;198904;198905;198906	269051;269052;269053;269054;269055;269056;269057;269058;269059;269060;269061;269062;269063;269064;269065;269066;269067;269068;269069;269070;269071;269072;269073;269074;269075;269076;269077	269055			27	
LLLLAGVDRLDK	1	Unmodified	1324.8078	0.80783613	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	2	3	3	75.053	71.985	2;3	1.0108E-31	61346	160511_QHF_FH_JSI10i_3	164.48	127.81			0.92171	0.80853	26.096	11	1	Median	0.93542	0.78903	15.827	3	0	Plateau	0.79601	0.9354	22.521	2	0	Median	0.98596	0.95551	29.015	3	0	Median	0.54801	0.55851	15.15	3	1	Plateau	1761400000	835200000	926240000	480760000	210080000	270680000	398680000	195890000	202790000	629100000	288170000	340930000	252910000	141070000	111830000	32115	5650	30394	198907;198908;198909;198910;198911;198912;198913;198914;198915;198916;198917	269078;269079;269080;269081;269082;269083;269084;269085;269086;269087;269088;269089;269090;269091;269092	269083			15	
LLLLDTQQEAGMLLR	0	Unmodified	1712.9495	0.94949134	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	99.223	99.071	2	1.4094E-09	86865	160511_QHF_FH_JSI11i_2	142.1	106.14			1.126	1.1612	9.7405	4	1	Median	1.1433	0.98605	NaN	1	1	Median	0.94865	1.153	NaN	1	0	Median	1.1379	1.1694	NaN	1	0	Median	1.1142	1.238	NaN	1	0	Median	260720000	129600000	131120000	45048000	20812000	24236000	57921000	31618000	26303000	93920000	47616000	46305000	63832000	29558000	34275000	32116	2795	30395	198918;198919;198920;198921	269093;269094;269095;269096;269097;269098;269099;269100	269096			8	
LLLLDYPPDR	0	Unmodified	1213.6707	0.67067394	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.442	74.809	2	0.0057343	65676	160511_QHF_FH_JSI11i_2	55.567	35.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32117	430	30396	198922	269101	269101			1	
LLLLESVSGLLQPR	0	Unmodified	1536.9239	0.92392852	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.36	5.91		2	6						3	3	1	4	3	100.25	97.67	2;3	8.8748E-31	88623	160511_QHF_FH_JSI12i_3	162.68	156.31			0.98896	0.96147	21.207	11	1	Median	1.334	1.1303	7.9478	3	0	Median	1.0623	1.2181	NaN	1	0	Median	0.84477	0.79448	20.993	4	1	Median	0.91744	0.9546	12.145	3	0	Median	1480600000	790070000	690560000	132630000	56495000	76131000	74530000	36607000	37924000	386010000	215180000	170830000	887460000	481790000	405670000	32118	3483	30397	198923;198924;198925;198926;198927;198928;198929;198930;198931;198932;198933	269102;269103;269104;269105;269106;269107;269108;269109;269110	269108			9	
LLLLGAGESGK	1	Unmodified	1056.6179	0.61791009	915;2048;818;2049	Q5JWF2;P63092;P38405;P04899;P08754;P19087;P63096	GNAS;GNAL;GNAI2;GNAI3;GNAT2;GNAI1	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.39	6	8	5			1	3	8	2	6	8	9	10	60.756	56.044	2	4.8167E-11	29796	160513_QHF_FH_JSI11Kac_5	136.57	0			0.96791	1.0045	64.287	30	6	Median	1.0308	0.87127	56.82	6	1	Median	0.86882	1.0553	47.358	7	0	Median	0.85222	0.84461	85.196	9	3	Median	1.0662	1.1178	49.746	8	2	Median	7612200000	3887600000	3724600000	1205100000	577550000	627540000	1729900000	992570000	737340000	2716000000	1270300000	1445700000	1961200000	1047200000	914010000	32119	2048;818;915;2049	30398	198934;198935;198936;198937;198938;198939;198940;198941;198942;198943;198944;198945;198946;198947;198948;198949;198950;198951;198952;198953;198954;198955;198956;198957;198958;198959;198960;198961;198962;198963;198964;198965;198966	269111;269112;269113;269114;269115;269116;269117;269118;269119;269120;269121;269122;269123;269124;269125;269126;269127;269128;269129;269130;269131;269132;269133;269134;269135;269136;269137;269138;269139;269140;269141;269142;269143;269144;269145;269146;269147;269148;269149;269150;269151;269152;269153;269154;269155;269156;269157	269144			47	
LLLLQKMLK	2	Acetyl (K)	1140.7304	0.73043743	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.311	79.973	2	0.0097628	44723	160513_QHF_FH_JSI11Kac_6	72.492	51.933			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12200000	12200000	0	0	0	0	0	0	0	12200000	12200000	0	0	0	0	32120	2578	30399	198967	269158	269158	2548		1	
LLLLVQGK	1	Unmodified	882.59024	0.59023878	463	O60936	NOL3	Nucleolar protein 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	16	0									5	2	1	1	1	69.188	60.296	2	0.0015558	32748	160513_QHF_FH_JSI11Kac_6	98.133	23.798			0.97694	1.1297	52.042	5	2	Median	1.1746	1.023	93.777	2	2	Median	0.97694	1.1297	NaN	1	0	Median	1.1781	1.1415	NaN	1	0	Median	0.64849	0.65954	NaN	1	0	Median	199830000	102990000	96842000	55948000	26749000	29198000	54358000	33276000	21082000	69838000	32531000	37308000	19687000	10434000	9253600	32121	463	30400	198968;198969;198970;198971;198972	269159;269160;269161;269162;269163;269164	269160			6	
LLLMHPNLTK	1	Unmodified	1178.6845	0.68454987	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	1	2	52.929	51.969	2;3	3.0077E-06	45726	160511_QHF_FH_JSI11i_3	102.52	90.477			0.85046	0.859	10.529	8	0	Median	1.0647	0.87229	6.8526	2	0	Median	0.70904	0.82278	14.704	3	0	Median	1.0254	0.99584	NaN	1	0	Median	0.83008	0.83405	8.8494	2	0	Median	2354200000	1254200000	1099900000	419190000	186340000	232840000	411800000	257080000	154720000	504160000	295480000	208680000	1019000000	515330000	503710000	32122	3074	30401	198973;198974;198975;198976;198977;198978;198979;198980	269165;269166;269167;269168;269169;269170;269171;269172	269166			7	
LLLNHASDNIPK	1	Unmodified	1333.7354	0.73539946	5492	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								3	1	1	39.384	38.59	2;3	1.5261E-05	33825	160511_QHF_FH_JSI11i_3	113.93	83.362			1.0451	1.0227	21.463	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0194	1.1945	33.642	2	1	Median	1.0904	1.0446	NaN	1	0	Median	1.0016	1.0013	NaN	1	0	Median	220710000	118100000	102600000	0	0	0	66591000	33642000	32948000	61691000	32690000	29001000	92426000	51772000	40654000	32123	5492	30402	198981;198982;198983;198984;198985	269173;269174;269175;269176;269177;269178;269179;269180	269174			8	
LLLNLHLDQSFK	1	Unmodified	1439.8136	0.81364979	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	86.279	86.203	2	0.008315	76922	160511_QHF_FH_JSI11i_3	50.123	39.891			1.0554	1.0319	7.8733	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1872	1.091	NaN	1	0	Median	0.93828	0.97607	NaN	1	0	Median	43073000	21270000	21803000	0	0	0	0	0	0	20917000	9980900	10936000	22156000	11289000	10867000	32124	2791	30403	198986;198987	269181;269182	269181			2	
LLLNNDNLLR	0	Unmodified	1196.6877	0.68772099	1788;1606	P47755;P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							1	3	3	3	63.921	63.236	2	2.546E-09	54412	160511_QHF_FH_JSI12i_2	128.36	101.76			0.85037	0.98248	11.392	10	0	Median	1.3539	1.1641	NaN	1	0	Median	0.83739	1.0023	11.957	3	0	Median	0.99012	0.96309	10.395	3	0	Median	0.85473	0.90136	12.473	3	0	Median	3927700000	1976600000	1951100000	477420000	195930000	281500000	829620000	428040000	401570000	1471400000	753240000	718170000	1149300000	599400000	549860000	32125	1606;1788	30404	198988;198989;198990;198991;198992;198993;198994;198995;198996;198997	269183;269184;269185;269186;269187;269188;269189;269190;269191;269192;269193;269194;269195;269196;269197;269198;269199	269187			17	
LLLNNGAK	1	Unmodified	841.50215	0.50215205	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.722	2	5	5							3	3	4	2	22.533	21.865	2	0.0024581	18875	160511_QHF_FH_JSI10i_2	79.939	16.961			1.1875	1.2897	54.164	10	4	Median	3.3705	2.8421	15.853	2	2	Median	1.0622	1.2494	4.2193	3	0	Median	1.3744	1.3036	53.694	4	2	Median	0.65373	0.74299	NaN	1	0	Median	2288900000	1077500000	1211300000	347350000	131010000	216340000	566310000	279590000	286720000	1081900000	511670000	570230000	293300000	155270000	138020000	32126	1067	30405	198998;198999;199000;199001;199002;199003;199004;199005;199006;199007;199008;199009	269200;269201;269202;269203;269204;269205;269206;269207;269208;269209;269210;269211;269212;269213	269212			14	
LLLNPGNQR	0	Unmodified	1023.5825	0.58252764	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							2	1		1	32.786	31.507	2	0.00034516	26320	160511_QHF_FH_JSI10i_3	97.068	36.308			1.1715	1.0448	9.3389	3	1	Median	1.3325	1.1322	11.464	2	1	Median	0.87865	1.0448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224010000	107710000	116300000	130840000	57122000	73717000	93168000	50586000	42582000	0	0	0	0	0	0	32127	884	30406	199010;199011;199012;199013	269214;269215;269216;269217;269218;269219	269215			6	
LLLNVTPTVRPDADQMTK	1	Unmodified	2011.0772	0.077211049	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			68.132	66.652	3	0.0017954	55845	160511_QHF_FH_JSI10i_3	48.112	24.974			0.88006	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88006	1.0355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44268000	27554000	16714000	0	0	0	44268000	27554000	16714000	0	0	0	0	0	0	32128	3102	30407	199014	269220;269221	269221			2	
LLLPGELAK	1	Unmodified	952.59572	0.59571809	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.34	4	4	4				1	2	3	4	4	5	5	65.691	61.848	2	8.6075E-06	54741	160511_QHF_FH_JSI10i_2	112.17	4.5129			1.1106	1.1107	28.432	18	0	Median	1.2698	1.0642	11.79	4	0	Median	1.1845	1.394	12.314	4	0	Median	1.1082	1.0247	14.389	5	0	Median	0.91942	0.93144	38.002	5	0	Median	9607800000	4271000000	5336800000	1492500000	641470000	850980000	2534800000	1060000000	1474800000	3340100000	1551400000	1788700000	2240500000	1018100000	1222300000	32129	1235;1902;2915	30408	199015;199016;199017;199018;199019;199020;199021;199022;199023;199024;199025;199026;199027;199028;199029;199030;199031;199032	269222;269223;269224;269225;269226;269227;269228;269229;269230;269231;269232;269233;269234;269235;269236;269237;269238;269239;269240;269241;269242;269243;269244;269245;269246;269247;269248;269249	269245			28	
LLLPGELAKHAVSEGTK	2	Acetyl (K)	1804.0094	0.0094490594	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15.8	0.373								1	5	1	1	3	1	77.986	69.064	2;3	2.3945E-69	37625	160513_QHF_FH_JSI11Kac_6	207.31	179.14			0.53991	0.57881	92.648	5	1	Median	NaN	NaN	NaN	0	0	Median	1.7864	2.1063	NaN	1	0	Median	0.25814	0.24693	83.441	3	1	Plateau	0.53991	0.57881	NaN	1	0	Median	1203700000	763330000	440340000	12904000	12904000	0	362630000	105770000	256860000	689480000	553580000	135900000	138650000	91070000	47583000	32130	1235;1902;2915	30409	199033;199034;199035;199036;199037;199038	269250;269251;269252;269253;269254;269255	269251	1121		6	
LLLPGVIK	1	Unmodified	851.58443	0.58442512	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	69.113	68.465	2	0.00811	59190	160511_QHF_FH_JSI12i_3	57.463	48.691			1.1253	1.1349	13.377	6	1	Median	1.3897	1.1998	NaN	1	0	Median	0.77989	0.96302	NaN	1	0	Median	1.281	1.253	13.274	2	1	Median	0.98313	1.0495	10.347	2	0	Median	242210000	107650000	134560000	24567000	10589000	13978000	31007000	14527000	16480000	101360000	42386000	58975000	85273000	40144000	45129000	32131	1694	30410	199039;199040;199041;199042;199043;199044	269256;269257;269258;269259;269260;269261;269262;269263;269264;269265;269266	269266			11	
LLLPHAFSR	0	Unmodified	1052.6131	0.61309948	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			52.993	51.421	3	0.029156	43000	160511_QHF_FH_JSI10i_3	25.437	22.585			1.077	1.0402	2.7299	2	0	Median	1.3146	1.0605	NaN	1	0	Median	0.88232	1.0203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67133000	31733000	35400000	25146000	8439500	16707000	41987000	23294000	18693000	0	0	0	0	0	0	32132	3875	30411	199045;199046	269267;269268	269267			2	
LLLPHWAK	1	Unmodified	976.58582	0.5858221	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	55.917	55.003	2;3	0.0018114	46747	160511_QHF_FH_JSI12i_3	58.782	49.919			1.0043	0.8701	26.21	9	2	Median	1.2025	0.97624	20.915	2	0	Median	0.66353	0.77311	46.88	3	1	Median	0.96173	0.89795	15.556	2	1	Median	0.92755	0.95003	12.428	2	0	Median	2027500000	968870000	1058600000	498400000	227800000	270600000	409980000	215730000	194250000	413350000	198800000	214550000	705750000	326530000	379220000	32133	802	30412	199047;199048;199049;199050;199051;199052;199053;199054;199055	269269;269270;269271;269272;269273;269274;269275;269276;269277;269278;269279;269280;269281;269282;269283;269284;269285;269286	269281			18	
LLLPLEYMAIFALCAK	1	Unmodified	1865.0195	0.01948516	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.33	95.609	2	0.0055922	56454	160513_QHF_FH_JSI10Kac_6	93.345	70.871			0.67596	0.81674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67596	0.81674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21749000	13385000	8363900	0	0	0	21749000	13385000	8363900	0	0	0	0	0	0	32134	2789	30413	199056	269287	269287			0	
LLLPLFR	0	Unmodified	870.56911	0.5691094	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.731	90.17	2	0.011095	75380	160511_QHF_FH_JSI10i_3	71.995	71.995			0.79719	0.82043	19.228	4	0	Median	1.3836	1.1429	NaN	1	0	Median	0.66573	0.78232	NaN	1	0	Median	0.78578	0.74264	NaN	1	0	Median	0.80875	0.8604	NaN	1	0	Median	75458000	36969000	38489000	21814000	8240500	13573000	17609000	9180900	8427700	23351000	13052000	10299000	12685000	6496100	6189000	32135	4463	30414	199057;199058;199059;199060	269288;269289;269290;269291;269292;269293;269294	269290			7	
LLLPTPTVK	1	Unmodified	980.62702	0.62701821	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	2	2	62.694	61.914	2	0.0001986	53703	160511_QHF_FH_JSI11i_2	85.212	38.786			1.1237	0.99728	13.392	8	0	Median	1.1237	0.94136	1.651	2	0	Median	0.78654	0.94962	1.9376	2	0	Median	1.1646	1.1661	3.2406	2	0	Median	1.1028	1.1742	18.112	2	0	Median	667200000	349820000	317380000	112150000	57039000	55111000	151370000	85431000	65944000	239520000	121870000	117650000	164160000	85485000	78674000	32136	3438	30415	199061;199062;199063;199064;199065;199066;199067;199068	269295;269296;269297;269298;269299;269300;269301;269302	269300			8	
LLLPVAEYFSGVQLPPHLSPFVTEK	1	Unmodified	2780.5153	0.5152895	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	102.19	102.2	3;4	5.8578E-52	88925	160511_QHF_FH_JSI12i_3	200.54	191.33			0.80004	0.76316	20.177	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80004	0.76316	NaN	1	0	Median	0.858	0.85637	26.939	2	0	Median	467330000	257560000	209760000	0	0	0	0	0	0	83032000	52602000	30431000	384290000	204960000	179330000	32137	150	30416	199069;199070;199071	269303;269304;269305;269306;269307	269305			5	
LLLPWLEAR	0	Unmodified	1109.6597	0.65971533	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.09		4	8						5	6	5	3	3	94.841	91.958	2	2.9179E-15	80974	160511_QHF_FH_JSI10i_3	144.38	81.661			1.0379	1.0778	19.35	12	7	Median	1.4469	1.2378	23.142	3	3	Median	0.94153	1.1635	5.0334	3	2	Median	1.0653	1.0062	12.109	3	1	Median	0.83422	0.89478	21.666	3	1	Median	7702200000	3765400000	3936900000	1016300000	448250000	568100000	1471400000	793330000	678090000	2183000000	1117500000	1065600000	3031400000	1406300000	1625100000	32138	2155	30417	199072;199073;199074;199075;199076;199077;199078;199079;199080;199081;199082;199083;199084;199085;199086;199087;199088	269308;269309;269310;269311;269312;269313;269314;269315;269316;269317;269318;269319;269320;269321;269322;269323;269324;269325;269326;269327;269328;269329;269330;269331;269332;269333;269334;269335;269336;269337;269338	269315			31	
LLLQAIQSFEK	1	Unmodified	1288.7391	0.73908786	218	O14920	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	80.366	80.125	2	0.00010655	69644	160511_QHF_FH_JSI12i_3	98.048	66.975			1.0408	1.0379	62.681	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0408	1.0379	62.681	2	2	Median	97996000	42499000	55497000	0	0	0	0	0	0	0	0	0	97996000	42499000	55497000	32139	218	30418	199089;199090	269339;269340	269340			2	
LLLQGEADQSLLTFIDK	1	Unmodified	1903.0302	0.030244081	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								1	3	3	2	101.53	101.42	2;3	6.2425E-98	87278	160511_QHF_FH_JSI12i_2	301.57	240.98			0.88402	0.95519	20.932	8	1	Median	1.8398	1.6003	NaN	1	1	Median	0.78103	0.96764	10.104	2	0	Median	0.93072	0.95399	18.234	3	0	Plateau	0.81746	0.91698	4.5552	2	0	Median	2817700000	1477300000	1340300000	273890000	79187000	194710000	616920000	338290000	278630000	932380000	489660000	442720000	994480000	570190000	424300000	32140	2094	30419	199091;199092;199093;199094;199095;199096;199097;199098;199099	269341;269342;269343;269344;269345;269346;269347;269348	269343			8	
LLLQGLMDSVEAK	1	Unmodified	1415.7694	0.76940171	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	90.141	89.745	2	4.5481E-06	80011	160511_QHF_FH_JSI11i_3	124.67	69.605			0.89031	0.89167	11.278	6	6	Median	1.0713	0.90682	NaN	1	1	Median	0.75578	0.91028	NaN	1	1	Median	0.89031	0.85797	0.37292	2	2	Median	0.93175	1.0057	19.409	2	2	Median	503220000	281380000	221840000	70555000	33939000	36616000	75137000	49962000	25175000	171160000	98801000	72358000	186370000	98677000	87696000	32141	2997	30420	199100;199101;199102;199103;199104;199105	269349;269350;269351;269352;269353;269354	269349			6	
LLLQQLEATLETGK	1	Unmodified	1555.8821	0.88212328	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.529	98.226	2	0.0010894	84575	160511_QHF_FH_JSI12i_2	80.979	56.597			1.1128	1.2002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1128	1.2002	NaN	1	1	Median	25784000	10306000	15479000	0	0	0	0	0	0	0	0	0	25784000	10306000	15479000	32142	2592	30421	199106	269355	269355			1	
LLLQVQHASK	1	Unmodified	1135.6713	0.67134264	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.2	2	10	17				3	6	8	7	14	13	12	33.764	29.767	2;3	1.0229E-25	24259	160511_QHF_FH_JSI9i_3	191.85	94.781			0.97298	1.0056	87.313	45	10	Median	1.2506	1.0676	15.774	7	0	Median	0.81711	0.96707	92.1	13	4	Median	1.1909	1.1963	91.244	13	4	Median	0.87738	0.96524	100.15	12	2	Median	110070000000	52882000000	57185000000	15684000000	6098500000	9585100000	17534000000	8453100000	9081100000	29279000000	12353000000	16926000000	47570000000	25977000000	21593000000	32143	1014;826;1013	30422	199107;199108;199109;199110;199111;199112;199113;199114;199115;199116;199117;199118;199119;199120;199121;199122;199123;199124;199125;199126;199127;199128;199129;199130;199131;199132;199133;199134;199135;199136;199137;199138;199139;199140;199141;199142;199143;199144;199145;199146;199147;199148;199149;199150;199151;199152	269356;269357;269358;269359;269360;269361;269362;269363;269364;269365;269366;269367;269368;269369;269370;269371;269372;269373;269374;269375;269376;269377;269378;269379;269380;269381;269382;269383;269384;269385;269386;269387;269388;269389;269390;269391;269392;269393;269394;269395;269396;269397;269398;269399;269400;269401;269402;269403;269404;269405;269406;269407;269408;269409;269410;269411;269412;269413;269414;269415;269416;269417;269418;269419;269420;269421;269422;269423;269424;269425;269426;269427;269428;269429;269430;269431;269432;269433;269434;269435;269436;269437;269438;269439;269440;269441;269442;269443;269444;269445;269446;269447;269448;269449;269450;269451;269452;269453;269454;269455;269456;269457;269458;269459;269460;269461	269395			106	
LLLQVQHASKQIAADK	2	Acetyl (K)	1804.0207	0.020682448	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.725	54.04	3	0.0080129	29300	160513_QHF_FH_JSI11Kac_6	53.188	40.355			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12999000	12999000	0	0	0	0	0	0	0	12999000	12999000	0	0	0	0	32144	1014	30423	199153	269462	269462	816		1	
LLLSEEEIEK	1	Unmodified	1201.6442	0.64418442	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	55.151	54.159	2	0.0011316	46813	160511_QHF_FH_JSI11i_2	72.607	27.854			0.73931	0.65432	14.835	4	0	Linear	0.93535	0.83473	NaN	1	0	Median	0.79457	0.978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67246	0.7288	8.5389	2	0	Median	239700000	137240000	102470000	36493000	15844000	20649000	33817000	18598000	15219000	0	0	0	169400000	102800000	66599000	32145	4821	30424	199154;199155;199156;199157;199158	269463;269464;269465;269466;269467;269468	269468			6	
LLLSEIFPSK	1	Unmodified	1145.6696	0.66961131	4563	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		88.762	88.762	2	0.034343	79249	160511_QHF_FH_JSI11i_3	46.462	27.682			1.1628	1.0764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1628	1.0764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14505000	8608600	5896300	0	0	0	0	0	0	14505000	8608600	5896300	0	0	0	32146	4563	30425	199159	269469	269469			1	
LLLSGTADGADLR	0	Unmodified	1300.6987	0.69867961	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		54.464	54.059	2	0.0079393	48993	160511_QHF_FH_JSI11i_1	48.998	23.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32147	489	30426	199160;199161	269470;269471	269470			2	
LLLSIPHSDLLDYPK	1	Unmodified	1722.9556	0.95562257	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	91.09	91.058	3	0.00035331	78996	160511_QHF_FH_JSI12i_3	74.789	67.381			2.0264	1.9365	46.04	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4649	1.3984	NaN	1	0	Median	2.8031	2.6816	NaN	1	1	Median	63157000	19786000	43370000	0	0	0	0	0	0	30684000	14377000	16307000	32473000	5409900	27063000	32148	5327	30427	199162;199163	269472;269473;269474	269474			3	
LLLSPGGSGSSSLQVTK	1	Unmodified	1629.8938	0.8937506	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.743	59.475	2	1.4817E-06	51193	160511_QHF_FH_JSI12i_3	118.37	74.179			0.92529	0.9524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92529	0.9524	NaN	1	1	Median	23603000	14072000	9530100	0	0	0	0	0	0	0	0	0	23603000	14072000	9530100	32149	4580	30428	199164	269475	269475			1	
LLLSSETPIEGK	1	Unmodified	1285.7129	0.71293269	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			2	2	2	2	58.295	54.664	2	4.2742E-06	49548	160511_QHF_FH_JSI11i_1	123.79	71.311			0.94476	0.97121	33.96	7	2	Median	1.5397	1.2905	75.181	2	1	Median	0.81543	0.95393	1.0102	2	1	Median	1.0907	1.0783	14.541	2	0	Median	0.94476	0.97121	NaN	1	0	Median	803730000	389580000	414150000	301980000	117620000	184370000	200820000	117440000	83383000	173270000	87499000	85766000	127660000	67026000	60632000	32150	4877	30429	199165;199166;199167;199168;199169;199170;199171;199172	269476;269477;269478;269479;269480;269481;269482;269483;269484;269485	269477			10	
LLLSTLTLLSK	1	Unmodified	1200.7693	0.76932535	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	2	3	2	93.052	89.203	2	1.8597E-14	44151	160513_QHF_FH_JSI9Kac_6	161.63	83.957			0.75596	0.72657	29.715	9	9	Median	0.92826	0.76854	54.338	2	2	Median	0.42048	0.48917	14.78	2	2	Median	0.77797	0.77088	7.3237	3	3	Median	0.65753	0.67191	27.773	2	2	Median	6101000000	3092600000	3008300000	1498500000	709110000	789400000	1733100000	1115100000	617950000	1362000000	622810000	739160000	1507400000	645580000	861820000	32151	4048	30430	199173;199174;199175;199176;199177;199178;199179;199180;199181	269486;269487;269488;269489;269490;269491;269492;269493;269494;269495;269496	269492			11	
LLLSYGADPTLATYSGR	0	Unmodified	1796.9309	0.93086439	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		77.464	76.774	2	3.4977E-06	67693	160511_QHF_FH_JSI9i_2	115.14	88.463			0.45663	0.42507	12.89	2	2	Median	0.44141	0.38804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47238	0.46563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81582000	57381000	24200000	33215000	24013000	9201900	0	0	0	48366000	33368000	14998000	0	0	0	32152	3164	30431	199182;199183	269497;269498	269497			2	
LLLTAIGYGHVR	0	Unmodified	1311.7663	0.76630566	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	4	2	3	67.047	60.713	2;3	2.9565E-39	32980	160513_QHF_FH_JSI11Kac_6	189.38	138.68			0.93597	1.0086	12.356	12	1	Median	1.35	1.155	16.714	3	0	Median	0.86662	0.99991	2.9739	4	1	Median	1.1811	1.1133	13.329	2	0	Median	0.91153	0.95804	13.448	3	0	Median	3472500000	1561300000	1911300000	753020000	285630000	467390000	1676100000	793140000	882990000	710370000	321610000	388760000	333000000	160890000	172120000	32153	3921	30432	199184;199185;199186;199187;199188;199189;199190;199191;199192;199193;199194;199195	269499;269500;269501;269502;269503;269504;269505;269506;269507;269508;269509;269510;269511;269512;269513;269514;269515;269516;269517;269518;269519	269504			21	
LLLTDKQEYSRLLFGK	2	Acetyl (K)	1965.0935	0.09351304	5775				yes	yes	1	0	0	2	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	99.394	90.019	3	0.013747	51634	160513_QHF_FH_JSI11Kac_6	48.823	28.086	+		1.2742	1.0847	18.42	5	0	Median	1.2742	1.0847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5334	1.4661	0	2	0	Median	0.98153	1.0323	0	2	0	Median	1188800000	545760000	643040000	225190000	100830000	124360000	0	0	0	493030000	186860000	306170000	470580000	258070000	212510000	32154	5775	30433	199196;199197;199198;199199;199200	269520;269521	269520	3557		2	
LLLTGTPLQNNLEELFHLLNFLTPER	0	Unmodified	3034.6492	0.64915722	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.72	95.257	3	4.3604E-223	54175	160513_QHF_FH_JSI9Kac_6	302.57	277.16			1.061	1.0598	8.5194	2	0	Median	1.1891	0.99782	NaN	1	0	Median	0.94676	1.1256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2049700000	1002800000	1046900000	206620000	85318000	121300000	1843100000	917520000	925570000	0	0	0	0	0	0	32155	2578;2318	30434	199201;199202	269522;269523	269522			2	
LLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRR	0	Unmodified	4088.1261	0.12609886	4726	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.83	97.11	4	4.7758E-116	57470	160513_QHF_FH_JSI10Kac_6	223.27	210.41			1.2079	1.4441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2079	1.4441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	592530000	269950000	322580000	0	0	0	592530000	269950000	322580000	0	0	0	0	0	0	32156	4726	30435	199203	269524	269524			1	
LLLTPWVK	1	Unmodified	968.60589	0.60588884	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	2	3	3	79.807	76.751	2	8.9596E-05	68135	160511_QHF_FH_JSI12i_2	131.04	119.13			1.0291	0.96475	17.59	11	0	Median	1.5295	1.2656	17.73	3	0	Median	0.87498	1.0275	16.658	2	0	Median	0.94278	0.9203	4.8501	3	0	Median	0.86744	0.93795	25.147	3	0	Median	3346200000	1628600000	1717600000	552370000	197930000	354440000	711090000	405060000	306030000	1128100000	577800000	550330000	954640000	447820000	506820000	32157	2502	30436	199204;199205;199206;199207;199208;199209;199210;199211;199212;199213;199214	269525;269526;269527;269528;269529;269530;269531;269532;269533;269534;269535;269536;269537;269538;269539;269540;269541;269542;269543;269544;269545	269530			21	
LLLTSAPSLATSPAFR	0	Unmodified	1643.9247	0.9246568	1834	P54802	NAGLU	Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	82.87	82.801	2;3	0.0003954	73947	160511_QHF_FH_JSI11i_3	90.614	64.495			1.0233	0.99839	10.808	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1972	1.1248	9.8967	2	1	Median	0.98487	0.97525	NaN	1	0	Median	70153000	30810000	39343000	0	0	0	0	0	0	39931000	13997000	25933000	30223000	16813000	13410000	32158	1834	30437	199215;199216;199217;199218;199219	269546;269547;269548;269549;269550	269546			5	
LLLTSTEK	1	Unmodified	903.5277	0.5276981	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		31.256	30.469	2	0.0030848	25753	160511_QHF_FH_JSI11i_2	75.213	56.482			0.85226	0.87253	27.651	3	1	Plateau	1.6264	1.435	NaN	1	1	Median	0.73852	0.90789	NaN	1	0	Median	0.85226	0.87253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	462650000	210830000	251820000	102040000	38523000	63520000	132570000	67547000	65021000	228040000	104760000	123280000	0	0	0	32159	3217	30438	199220;199221;199222	269551;269552;269553	269552			3	
LLLVFWEIVPK	1	Unmodified	1355.8217	0.82169528	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.63		3	4						5	3	3	4	2	100.69	97.059	2	5.5024E-18	85120	160511_QHF_FH_JSI10i_3	159.37	122.18			0.91363	0.84187	43.264	12	1	Median	1.0019	0.84061	11.838	3	0	Plateau	0.9828	1.1856	14.245	3	0	Median	0.81789	0.76863	39.222	4	1	Median	0.80121	0.83417	100.81	2	0	Median	3169300000	1660100000	1509200000	1028400000	492720000	535730000	924090000	497540000	426540000	765160000	368870000	396290000	451600000	300930000	150670000	32160	1804	30439	199223;199224;199225;199226;199227;199228;199229;199230;199231;199232;199233;199234	269554;269555;269556;269557;269558;269559;269560;269561;269562;269563;269564;269565;269566	269555			11	
LLLWSQR	0	Unmodified	914.53379	0.53378653	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			62.457	57.676	2	0.024235	47347	160511_QHF_FH_JSI9i_3	58.167	35.148			1.1161	1.0892	51.812	2	1	Median	0.9501	0.75506	NaN	1	1	Median	1.311	1.5711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91329000	40970000	50359000	51319000	27270000	24048000	40010000	13700000	26311000	0	0	0	0	0	0	32161	2636	30440	199235;199236	269567;269568	269567			2	
LLLYHLHPFLQR	0	Unmodified	1548.8929	0.89290316	425	O60512	B4GALT3	Beta-1,4-galactosyltransferase 3;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	75.972	67.322	3;4	7.1518E-13	35956	160513_QHF_FH_JSI9Kac_6	121.9	110.19			0.83368	1.021	18.101	6	0	Plateau	1.3532	1.1674	22.86	2	0	Median	0.83368	0.98822	NaN	1	0	Median	1.0228	0.94963	NaN	1	0	Median	1.1601	1.227	22.067	2	0	Median	644950000	361480000	283470000	114490000	51144000	63347000	337780000	216000000	121780000	61750000	33065000	28685000	130920000	61266000	69657000	32162	425	30441	199237;199238;199239;199240;199241;199242;199243	269569;269570;269571;269572;269573;269574;269575;269576;269577;269578;269579;269580	269572			12	
LLMASPTR	0	Unmodified	887.48987	0.48987281	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		29.465	29.465	2	0.016008	25434	160511_QHF_FH_JSI11i_3	49.933	20.623			0.78179	0.72722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78179	0.72722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103480000	56562000	46920000	0	0	0	0	0	0	103480000	56562000	46920000	0	0	0	32163	3741	30442	199244	269581	269581			1	
LLMDMALFMGR	0	Unmodified	1296.6393	0.63925593	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.159	85.439	2	0.0031423	48721	160513_QHF_FH_JSI10Kac_6	66.299	50.096			1.3267	1.5573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3267	1.5573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46048000	22335000	23713000	0	0	0	46048000	22335000	23713000	0	0	0	0	0	0	32164	1790	30443	199245	269582	269582			1	
LLMEMQGK	1	Unmodified	948.47726	0.47725921	5838				yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	3	1	8.0139	7.6811	2	0.056342	5445	160511_QHF_FH_JSI11i_1	35.88	19.104	+		1.009	0.94874	6.7357	8	0	Median	1.0678	0.87566	3.3883	2	0	Median	0.74556	0.89414	3.676	2	0	Median	1.0127	0.99625	0.9833	3	0	Plateau	0.91415	0.98084	NaN	1	0	Median	8071400000	4342100000	3729300000	1336700000	595600000	741150000	1638000000	971950000	666060000	3284200000	1722300000	1561900000	1812500000	1052200000	760240000	32165	5838	30444	199246;199247;199248;199249;199250;199251;199252;199253	269583	269583			1	
LLMHGKEVGSIIGK	2	Acetyl (K)	1522.8541	0.85413439	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	1	0	0	1			By MS/MS		16	0									2			2		68.587	59.025	2;3	0.00025738	31983	160513_QHF_FH_JSI11Kac_6	131.37	106.58			0.098022	0.096055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.098022	0.096055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47544000	46089000	1454900	0	0	0	0	0	0	47544000	46089000	1454900	0	0	0	32166	2656;1893;2657	30445	199254;199255	269584;269585	269585	1897		2	
LLMHLEEMQHTISTDEEK	1	Unmodified	2183.0239	0.023854849	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	60.578	60.441	3;4	2.048E-06	52132	160511_QHF_FH_JSI12i_3	101.5	75.068			0.83629	0.80497	14.682	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9531	0.88734	10.777	2	0	Median	0.72238	0.72668	11.47	2	1	Median	296840000	157680000	139160000	0	0	0	0	0	0	154240000	63664000	90572000	142600000	94017000	48585000	32167	3900	30446	199256;199257;199258;199259	269586;269587;269588;269589	269589			4	
LLMKFGDEPVTK	2	Acetyl (K);Oxidation (M)	1434.7429	0.74285261	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	64.133	53.394	2	3.3773E-08	29147	160513_QHF_FH_JSI10Kac_4	112.15	83.061			0.85565	0.8981	18.66	6	0	Median	1.1977	1.004	NaN	1	0	Median	0.88909	1.049	35.238	2	0	Median	0.84052	0.83205	NaN	1	0	Median	0.82772	0.8981	5.7907	2	0	Median	45624000	21805000	23819000	4031200	1969200	2062000	13824000	7213000	6610900	5716800	2395900	3320900	22052000	10227000	11825000	32168	4938	30447	199260;199261;199262;199263;199264;199265	269590;269591;269592;269593;269594;269595;269596;269597;269598	269592	3273	2558	9	
LLMKFGDEPVTK	2	Acetyl (K)	1418.7479	0.74793799	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	2	1	1	75.916	66.018	2	4.2676E-08	32985	160513_QHF_FH_JSI10Kac_5	114.83	114.83			0.82398	0.95342	28.611	5	0	Median	0.82398	0.714	NaN	1	0	Median	0.98784	1.1846	30.699	2	0	Median	1.0829	1.0776	NaN	1	0	Median	0.70307	0.7783	NaN	1	0	Median	84696000	39134000	45562000	12048000	5821300	6226900	42454000	20518000	21936000	21149000	8003900	13146000	9044300	4791200	4253000	32169	4938	30447	199266;199267;199268;199269;199270	269599;269600;269601;269602;269603;269604;269605;269606	269606	3273		8	
LLMLGLDNAGK	1	Unmodified	1143.6322	0.63217995	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.97	1	4						2		1	2	3	1	73.078	69.515	2	3.6551E-05	60432	160511_QHF_FH_JSI12i_2	115.71	70.633			0.73638	0.81448	15.457	7	0	Median	0.99904	0.84711	NaN	1	0	Median	0.81369	0.96269	18.161	2	0	Median	0.76477	0.76983	6.4801	3	0	Plateau	0.73638	0.81448	NaN	1	0	Median	403060000	213170000	189880000	66982000	37474000	29507000	77173000	41766000	35407000	157580000	81772000	75808000	101320000	52161000	49161000	32170	1450	30448	199271;199272;199273;199274;199275;199276;199277	269607;269608;269609;269610;269611;269612;269613;269614	269608			4	
LLMLHGQK	1	Unmodified	938.53716	0.53715735	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			26.165	24.842	2;3	0.0058831	20472	160511_QHF_FH_JSI10i_3	51.854	35.652			0.7249	0.7063	164.14	2	2	Median	0.26841	0.22127	NaN	1	1	Median	1.9578	2.2545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67367000	40648000	26719000	21306000	18286000	3020200	46060000	22362000	23699000	0	0	0	0	0	0	32171	2647	30449	199278;199279;199280	269615;269616;269617	269615			3	
LLMLYTR	0	Unmodified	908.51536	0.51535927	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.2			3					1	4	2	3	2	1	62.252	55.943	2	3.4368E-05	29189	160513_QHF_FH_JSI12Kac_6	128.38	105.76			0.97648	0.95063	24.976	8	1	Median	1.2709	1.0539	28.563	2	0	Median	0.7732	0.91117	36.569	3	1	Median	1.0554	0.99114	8.9582	2	0	Median	0.92447	0.97141	NaN	1	0	Median	1028700000	541470000	487280000	242420000	110700000	131720000	443630000	251400000	192220000	272040000	138040000	133990000	70664000	41315000	29349000	32172	3503	30450	199281;199282;199283;199284;199285;199286;199287;199288	269618;269619;269620;269621;269622;269623;269624;269625	269623			8	
LLMLYTR	0	Oxidation (M)	924.51027	0.5102739	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	52.604	43.4	2	0.049827	23855	160513_QHF_FH_JSI10Kac_6	47.743	47.743			0.70941	0.79631	40.201	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87447	1.0581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57551	0.59928	NaN	1	0	Median	45155000	25643000	19513000	0	0	0	26383000	13707000	12676000	0	0	0	18772000	11936000	6836800	32173	3503	30450	199289;199290	269626	269626			1	
LLMMAGIDDCYTSAR	0	Unmodified	1715.7681	0.76809785	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	73.503	72.807	2	8.5282E-10	63870	160511_QHF_FH_JSI11i_2	176.8	162.64			1.0139	1.1141	23.236	5	1	Median	1.2955	1.1141	NaN	1	0	Median	0.92426	1.1481	NaN	1	0	Median	0.91263	0.88997	7.8242	2	1	Median	1.3809	1.5513	NaN	1	0	Median	394930000	189900000	205040000	43945000	16405000	27540000	87681000	40129000	47553000	152770000	82555000	70212000	110540000	50809000	59733000	32174	1084	30451	199291;199292;199293;199294;199295	269627;269628;269629;269630;269631;269632;269633;269634;269635;269636;269637	269635			11	
LLMQPLSSIHVR	0	Unmodified	1392.7911	0.7911402	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	66.144	65.252	3	0.014278	54723	160511_QHF_FH_JSI10i_3	34.179	25.771			1.3154	1.4211	18.507	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0706	1.2468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6163	1.6198	NaN	1	1	Median	75159000	34106000	41053000	0	0	0	33041000	14762000	18279000	0	0	0	42118000	19344000	22774000	32175	2977	30452	199296;199297	269638;269639	269638			2	
LLMSEDYFTQAMEVK	1	Unmodified	1803.8423	0.84230866	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								1	4	5	4	91.016	90.569	2;3	7.1052E-81	79565	160511_QHF_FH_JSI11i_2	247.29	235.42			0.73628	0.77609	17.414	13	5	Median	1.0612	0.90412	NaN	1	0	Median	0.67991	0.81651	29.934	4	2	Median	0.76666	0.74044	13.909	4	1	Median	0.74256	0.78424	3.6066	4	2	Median	1083900000	606650000	477270000	147170000	72290000	74879000	303320000	174560000	128760000	397960000	223870000	174100000	235470000	135930000	99542000	32176	1544	30453	199298;199299;199300;199301;199302;199303;199304;199305;199306;199307;199308;199309;199310;199311	269640;269641;269642;269643;269644;269645;269646;269647;269648;269649;269650;269651	269651			12	
LLMSEDYFTQAMEVK	1	Oxidation (M)	1819.8372	0.83722328	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS				2	0		1								1				75.23	74.438	2	0.0091293	65679	160511_QHF_FH_JSI9i_2	56.094	32.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32177	1544	30453	199312	269652	269652		1214	1	
LLMTEVAWTK	1	Unmodified	1190.6369	0.63693097	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	1	2	72.696	69.097	2	5.9066E-05	60316	160511_QHF_FH_JSI12i_2	91.265	42.168			0.88475	0.88478	31.84	6	1	Median	0.79952	0.67882	28.161	2	0	Median	0.93134	1.1309	NaN	1	0	Median	1.0229	1.0321	NaN	1	0	Median	0.66285	0.71125	40.186	2	1	Median	390160000	194410000	195750000	95172000	46894000	48278000	75841000	39277000	36564000	113140000	51092000	62045000	106010000	57143000	48864000	32178	1060	30454	199313;199314;199315;199316;199317;199318	269653;269654;269655;269656;269657;269658;269659;269660	269654			8	
LLNDEDPVVVTK	1	Unmodified	1340.7187	0.71874635	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.496	48.817	2	3.1478E-05	43311	160511_QHF_FH_JSI9i_1	125.97	73.488			0.8573	0.84964	10.265	4	0	Median	0.97719	0.79792	NaN	1	0	Median	0.76891	0.90471	NaN	1	0	Median	0.95584	0.94141	NaN	1	0	Median	0.70436	0.75728	NaN	1	0	Median	1683400000	860060000	823370000	442480000	217050000	225430000	397400000	220520000	176890000	452990000	220590000	232400000	390560000	201910000	188650000	32179	1065	30455	199319;199320;199321;199322	269661;269662;269663;269664;269665;269666;269667;269668	269668			8	
LLNDEDQVVVNK	1	Unmodified	1384.7198	0.71980898	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.2	39.565	2	3.1889E-05	35058	160511_QHF_FH_JSI9i_1	106.4	73.507			0.85283	0.91208	23.87	4	1	Median	0.81054	0.66195	NaN	1	0	Median	0.87684	1.0386	NaN	1	0	Median	0.82948	0.80096	NaN	1	0	Median	1.0875	1.1093	NaN	1	1	Median	324580000	171350000	153230000	67807000	33585000	34222000	95396000	49331000	46064000	77832000	46181000	31650000	83546000	42257000	41289000	32180	1422	30456	199323;199324;199325;199326	269669;269670;269671;269672;269673	269673			5	
LLNENSYVPR	0	Unmodified	1203.6248	0.62478638	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	6.18	4	4	4				3	3	1	4	6	5	4	43.43	39.486	2	6.0002E-11	33876	160511_QHF_FH_JSI12i_2	166.16	119.74			0.99726	1.0875	21.908	18	2	Median	1.1019	0.9331	28.925	4	0	Median	0.87126	1.0678	15.354	5	0	Median	1.0506	1.0423	15.723	5	1	Median	1.043	1.1288	22.988	4	1	Median	5697900000	2715200000	2982800000	835970000	366300000	469670000	1558800000	792440000	766330000	2052600000	934830000	1117800000	1250600000	621580000	629030000	32181	793	30457	199327;199328;199329;199330;199331;199332;199333;199334;199335;199336;199337;199338;199339;199340;199341;199342;199343;199344;199345	269674;269675;269676;269677;269678;269679;269680;269681;269682;269683;269684;269685;269686;269687;269688;269689;269690;269691;269692;269693;269694	269677			21	
LLNEVMVEHFFR	0	Unmodified	1532.781	0.78096945	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	82.913	82.232	3	2.6766E-05	73138	160511_QHF_FH_JSI11i_3	78.287	67.82			0.99019	1.0694	32.005	5	1	Median	1.7109	1.4352	NaN	1	0	Median	0.67896	0.80375	40.379	2	1	Median	0.99019	0.9333	NaN	1	0	Median	1.1175	1.1347	NaN	1	0	Median	274240000	146950000	127290000	15067000	5827700	9239400	51953000	28754000	23198000	75414000	42526000	32888000	131810000	69840000	61966000	32182	4779	30458	199346;199347;199348;199349;199350	269695;269696;269697;269698;269699;269700;269701;269702	269695			8	
LLNFLMK	1	Unmodified	877.50955	0.50954561	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		8	8						2	4	5	5	4	73.195	71.582	2	0.0049208	64016	160511_QHF_FH_JSI11i_3	106.76	76.043			0.66383	0.5696	125.32	18	18	Median	0.93206	0.7618	117.97	4	4	Median	0.22674	0.26876	157.21	5	5	Median	1.0168	0.95173	124.29	5	5	Median	0.90081	0.95035	145.91	4	4	Median	6727700000	3523700000	3204000000	1261800000	587720000	674090000	1278700000	692620000	586040000	1920500000	956670000	963870000	2266700000	1286600000	980020000	32183	2094	30459	199351;199352;199353;199354;199355;199356;199357;199358;199359;199360;199361;199362;199363;199364;199365;199366;199367;199368	269703;269704;269705;269706;269707;269708;269709;269710;269711;269712;269713;269714;269715;269716;269717;269718;269719;269720;269721;269722;269723;269724	269704			22	
LLNFLMKHVFHPK	2	Acetyl (K)	1664.9225	0.92248873	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			79.517	73.876	4	0.0021697	40388	160513_QHF_FH_JSI10Kac_6	61.235	54.798			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31872000	0	31872000	0	0	0	31872000	0	31872000	0	0	0	0	0	0	32184	2094	30460	199369	269725	269725	2201		1	
LLNFPTIVER	0	Unmodified	1200.6867	0.68665836	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	78.62	77.89	2	1.9649E-09	65330	160511_QHF_FH_JSI10i_3	131.44	77.282			0.84266	0.79915	16.227	7	1	Median	1.1126	0.9279	23.211	2	0	Median	0.71214	0.8574	19.716	2	0	Median	0.78752	0.77373	16.941	2	1	Median	0.7818	0.79915	NaN	1	0	Median	1761800000	915840000	845960000	456840000	205180000	251660000	463260000	263440000	199810000	549720000	284290000	265430000	291990000	162930000	129060000	32185	357	30461	199370;199371;199372;199373;199374;199375;199376	269726;269727;269728;269729;269730;269731;269732;269733;269734;269735;269736;269737;269738	269728			13	
LLNGPGDVETGTSITVPQK	1	Unmodified	1925.0106	0.010571271	4846	Q9HC07	TMEM165	Transmembrane protein 165	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	61.44	60.875	2;3	2.1301E-10	55005	160511_QHF_FH_JSI10i_1	161.84	127.88			0.93267	0.96685	18.21	6	1	Median	0.86704	0.70526	NaN	1	0	Median	0.68895	0.82391	19.796	2	1	Median	1.0287	0.98771	0.18787	2	0	Median	1.0518	1.0841	NaN	1	0	Median	483750000	270410000	213330000	55137000	28960000	26177000	195090000	110640000	84453000	181750000	104340000	77411000	51775000	26482000	25293000	32186	4846	30462	199377;199378;199379;199380;199381;199382	269739;269740;269741;269742;269743;269744;269745;269746;269747	269744			9	
LLNGPGDVETGTSITVPQKK	2	Unmodified	2053.1055	0.10553429	4846	Q9HC07	TMEM165	Transmembrane protein 165	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	53.164	53.046	3	3.1125E-05	47009	160511_QHF_FH_JSI11i_3	81.665	55.708			1.5822	1.5329	44.723	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2603	2.103	NaN	1	1	Median	1.1075	1.1173	NaN	1	0	Median	119450000	49728000	69719000	0	0	0	0	0	0	35498000	10705000	24793000	83949000	39023000	44926000	32187	4846	30463	199383;199384	269748;269749	269748			2	
LLNHILDNSEDDTK	1	Unmodified	1625.7897	0.78967946	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	40.374	40.374	2	1.1965E-12	34469	160511_QHF_FH_JSI12i_3	117.23	99.369			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23834000	8680300	15154000	0	0	0	0	0	0	23834000	8680300	15154000	0	0	0	32188	2588	30464	199385;199386;199387	269750;269751;269752	269752			3	
LLNHYQAVPNLHK	1	Unmodified	1545.8416	0.84159587	5248	Q9UBQ6	EXTL2	Exostosin-like 2;Processed exostosin-like 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.097	34.969	3	0.0036288	29586	160511_QHF_FH_JSI12i_3	51.135	43.295			0.18956	0.19069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18956	0.19069	NaN	1	1	Median	331120000	291340000	39774000	0	0	0	0	0	0	0	0	0	331120000	291340000	39774000	32189	5248	30465	199388	269753	269753			1	
LLNILDPKK	2	Unmodified	1052.6594	0.65938097	2237	Q05D32	CTDSPL2	CTD small phosphatase-like protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	50.332	50.214	3	0.0088882	43044	160511_QHF_FH_JSI12i_3	46.001	32.41			1.1201	1.1612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1201	1.1612	NaN	1	1	Median	54901000	36579000	18323000	0	0	0	0	0	0	15280000	15280000	0	39621000	21298000	18323000	32190	2237	30466	199389;199390	269754;269755	269755			2	
LLNILGLIFK	1	Unmodified	1142.7427	0.74271667	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	3	2	101.58	98.16	2	3.4711E-19	49455	160513_QHF_FH_JSI12Kac_6	170.22	99.296			0.85257	0.74377	38.072	10	10	Median	0.86668	0.74377	2.6744	2	2	Median	0.52604	0.64071	48.215	3	3	Median	0.51521	0.50565	56.565	3	3	Plateau	0.96623	0.97761	5.9362	2	2	Median	18885000000	10321000000	8563900000	3970500000	2053000000	1917500000	3637100000	2156800000	1480300000	6305500000	3615600000	2689900000	4971600000	2495400000	2476200000	32191	2605	30467	199391;199392;199393;199394;199395;199396;199397;199398;199399;199400	269756;269757;269758;269759;269760;269761;269762;269763;269764;269765	269764			10	
LLNIWQER	0	Unmodified	1070.5873	0.58727866	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2.25	0.433		3	1							2	1	1		61.105	60.143	2	0.020907	52975	160511_QHF_FH_JSI9i_2	45.382	22.857			0.9965	1.6095	35.729	4	0	Linear	1.54	1.2766	4.5326	2	0	Median	0.56028	0.69506	NaN	1	0	Median	0.68002	0.68254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	286190000	136380000	149810000	148690000	52805000	95882000	69050000	39403000	29647000	68453000	44173000	24280000	0	0	0	32192	4921	30468	199401;199402;199403;199404	269766;269767	269767			2	
LLNKHGIK	2	Acetyl (K)	963.58655	0.58655038	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	30.35	21.412	3	0.0021522	12277	160513_QHF_FH_JSI11Kac_6	71.501	35.106			0.43933	0.4572	30.055	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37104	0.36966	NaN	1	0	Median	0.52019	0.56546	NaN	1	0	Median	45901000	33412000	12489000	0	0	0	0	0	0	37487000	27685000	9802200	8414000	5726900	2687100	32193	596	30469	199405;199406	269768	269768	308		1	
LLNLEGFPSGSQSR	0	Unmodified	1503.7682	0.76815616	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	65.669	65.268	2	2.0497E-10	56442	160511_QHF_FH_JSI12i_3	132.76	58.834			1.043	1.0952	11.554	3	0	Median	1.043	0.89884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1684	1.1007	NaN	1	0	Median	1.0357	1.0952	NaN	1	0	Median	161690000	79363000	82323000	44941000	18348000	26593000	0	0	0	57880000	29884000	27996000	58866000	31131000	27734000	32194	3466	30470	199407;199408;199409;199410	269769;269770;269771;269772;269773;269774;269775	269775			7	
LLNLMWLPKPPGR	1	Unmodified	1533.8854	0.88537494	3535	Q8N531	FBXL6	F-box/LRR-repeat protein 6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			84.079	78.454	3	0.0011509	43707	160513_QHF_FH_JSI10Kac_6	63.908	44.07			1.0815	1.2637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0815	1.2637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80314000	39649000	40665000	0	0	0	80314000	39649000	40665000	0	0	0	0	0	0	32195	3535	30471	199411	269776	269776			1	
LLNNAFEELVAFQR	0	Unmodified	1662.873	0.87295558	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.65		8	5						2	2	3	5	5	98.406	97.633	2;3	2.0488E-40	85609	160511_QHF_FH_JSI12i_3	245.58	191.17			1.0647	1.006	34.151	14	1	Median	1.1251	0.96333	8.9665	2	0	Median	0.79489	0.96189	23.218	3	0	Plateau	0.74366	0.74978	19.302	4	0	Linear	1.3745	1.3989	48.338	5	1	Median	1645000000	840930000	804060000	222120000	112660000	109470000	255730000	135170000	120560000	550890000	291490000	259400000	616240000	301610000	314640000	32196	1254	30472	199412;199413;199414;199415;199416;199417;199418;199419;199420;199421;199422;199423;199424;199425;199426	269777;269778;269779;269780;269781;269782;269783;269784;269785;269786;269787;269788;269789;269790;269791;269792;269793;269794;269795;269796;269797;269798;269799;269800	269799			24	
LLNNWLTYSK	1	Unmodified	1250.6659	0.66592292	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	68.02	67.071	2	1.6464E-06	56178	160511_QHF_FH_JSI10i_3	119.75	84.391			1.1986	1.0182	23.967	5	2	Median	1.1986	0.95474	NaN	1	0	Median	1.0074	1.1562	43.21	2	2	Median	1.3268	1.2277	NaN	1	0	Median	1.0142	1.0182	NaN	1	0	Median	403050000	200960000	202090000	52843000	21233000	31610000	101240000	47510000	53735000	87266000	43384000	43882000	161700000	88833000	72863000	32197	4206	30473	199427;199428;199429;199430;199431	269801;269802;269803;269804;269805;269806	269802			6	
LLNPLIR	0	Unmodified	837.54362	0.54362294	1096	P16383	GCFC2	GC-rich sequence DNA-binding factor 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	54.866	54.271	2	0.045601	45527	160511_QHF_FH_JSI10i_3	44.611	9.5054			0.79739	0.83551	18.188	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79739	0.92202	NaN	1	0	Median	0.71628	0.6481	NaN	1	0	Median	0.8356	0.83551	NaN	1	0	Median	100060000	54063000	46000000	0	0	0	24258000	12544000	11715000	33393000	19734000	13659000	42412000	21785000	20627000	32198	1096	30474	199432;199433;199434	269807;269808	269807			2	
LLNPSATR	0	Unmodified	870.49232	0.49231565	5162	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		16.613	16.613	2	0.03013	13663	160511_QHF_FH_JSI11i_3	41.652	11.467			1.2265	1.1774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2265	1.1774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54677000	25695000	28982000	0	0	0	0	0	0	54677000	25695000	28982000	0	0	0	32199	5162	30475	199435	269809	269809			1	
LLNPSLQK	1	Unmodified	911.54402	0.54401687	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	31.513	30.6	2	0.016537	26548	160511_QHF_FH_JSI9i_2	49.442	23.991			0.93774	0.67064	36.812	3	2	Plateau	1.4327	1.21	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6138	0.61524	NaN	1	1	Median	0.59922	0.67064	NaN	1	1	Median	284240000	150270000	133970000	90650000	38417000	52233000	0	0	0	121400000	66745000	54653000	72196000	45111000	27085000	32200	4831	30476	199436;199437;199438	269810;269811;269812;269813	269812			4	
LLNQEEGEYYNVPIPEGDEEGNMELR	0	Unmodified	3036.3659	0.36586067	1112	P17252	PRKCA	Protein kinase C alpha type	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	82.632	82.119	3	0.02569	74840	160511_QHF_FH_JSI12i_1	23.917	21.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32201	1112	30477	199439	269814	269814			1	
LLNQPNQWPLVK	1	Unmodified	1448.814	0.81398414	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	68.645	67.999	2	1.3187E-07	59891	160511_QHF_FH_JSI9i_2	135.71	91.904			1.0031	0.98369	21.383	6	0	Median	1.0703	0.91823	NaN	1	0	Median	0.79421	0.95324	NaN	1	0	Median	1.2577	1.1916	35.898	2	0	Median	1.0643	1.1495	17.582	2	0	Median	721510000	333740000	387770000	108520000	53631000	54889000	148640000	71683000	76958000	245080000	106470000	138610000	219270000	101960000	117310000	32202	1065	30478	199440;199441;199442;199443;199444;199445;199446	269815;269816;269817;269818;269819;269820;269821;269822;269823;269824;269825;269826	269820			12	
LLNSSNIAEHPGFMK	1	Unmodified	1656.8294	0.8293762	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	51.083	50.484	2;3	4.2713E-06	43185	160511_QHF_FH_JSI12i_3	87.363	61.704			1.0479	1.0832	1.9617	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.96953	1.1195	NaN	1	0	Median	1.1907	1.1083	NaN	1	0	Median	1.0479	1.0779	NaN	1	0	Median	506040000	236420000	269620000	0	0	0	68681000	38893000	29788000	157910000	68227000	89678000	279460000	129300000	150160000	32203	4802	30479	199447;199448;199449;199450	269827;269828;269829;269830;269831	269831			5	
LLNTFLER	0	Unmodified	1004.5655	0.56548059	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	56.048	55.169	2	0.0001632	47310	160511_QHF_FH_JSI12i_3	135.84	89.179			0.79036	0.82713	20.676	6	3	Median	1.0055	0.83966	38.587	2	2	Median	0.65305	0.78075	24.113	2	1	Median	0.87588	0.84403	NaN	1	0	Median	0.80027	0.81056	NaN	1	0	Median	1720200000	949960000	770210000	259960000	141720000	118250000	369030000	220310000	148720000	468710000	236420000	232280000	622470000	351510000	270960000	32204	2517	30480	199451;199452;199453;199454;199455;199456	269832;269833;269834;269835;269836;269837;269838;269839	269839			8	
LLNTVEETTK	1	Unmodified	1146.6132	0.61321864	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	26.98	26.478	2	0.00030773	23002	160511_QHF_FH_JSI9i_1	90.696	47.826			0.3817	0.44356	66.889	5	4	Median	0.2666	0.21642	NaN	1	1	Median	0.3817	0.44356	NaN	1	1	Median	0.69343	0.66859	96.774	2	1	Median	0.47382	0.48891	NaN	1	1	Median	254030000	174130000	79897000	51748000	40741000	11006000	49462000	36307000	13155000	88101000	51285000	36816000	64715000	45796000	18919000	32205	1779	30481	199457;199458;199459;199460;199461	269840;269841;269842;269843;269844	269844			4	
LLNVGFQEALK	1	Unmodified	1230.6972	0.69722304	1072	P15291	B4GALT1	Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.221	69.323	2	0.00014133	59837	160511_QHF_FH_JSI12i_2	83.869	53.299			1.0422	1.0767	12.69	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0713	1.3369	NaN	1	1	Median	1.0422	1.0508	NaN	1	0	Median	0.98847	1.1057	NaN	1	0	Median	182530000	94756000	87770000	0	0	0	40447000	23132000	17315000	71499000	40408000	31091000	70580000	31216000	39364000	32206	1072	30482	199462;199463;199464	269845;269846	269845			2	
LLNVGVR	0	Unmodified	769.48102	0.48102268	425	O60512	B4GALT3	Beta-1,4-galactosyltransferase 3;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			21.013	20.193	2	0.050833	17349	160511_QHF_FH_JSI10i_2	42.719	16.61			0.73526	0.90451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73526	0.90451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134300000	69152000	65145000	0	0	0	134300000	69152000	65145000	0	0	0	0	0	0	32207	425	30483	199465	269847	269847			1	
LLNVWQVR	0	Unmodified	1026.5974	0.59744942	2623	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			64.09	62.586	2	0.015255	51335	160511_QHF_FH_JSI9i_3	50.632	32.192			1.0338	1.0157	6.9105	2	0	Median	1.2901	1.0666	NaN	1	0	Median	0.82842	0.96726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53044000	22213000	30832000	28182000	9631600	18550000	24862000	12581000	12281000	0	0	0	0	0	0	32208	2623	30484	199466;199467	269848;269849	269848			2	
LLPAELPAK	1	Unmodified	950.58007	0.58006802	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	55.216	50.721	2	0.00072971	44458	160511_QHF_FH_JSI9i_2	75.213	58.286			0.97334	1.0091	14.749	19	0	Median	1.147	0.95668	8.4927	4	0	Median	0.86439	1.0357	10.23	5	0	Median	1.0227	1.0007	8.9376	5	0	Median	0.96344	1.0255	26.781	5	0	Median	4294300000	1974200000	2320000000	680990000	288080000	392900000	1062700000	549260000	513480000	1494100000	665950000	828100000	1056500000	470930000	585550000	32209	2094	30485	199468;199469;199470;199471;199472;199473;199474;199475;199476;199477;199478;199479;199480;199481;199482;199483;199484;199485;199486	269850;269851;269852;269853;269854;269855;269856;269857;269858;269859;269860;269861;269862;269863;269864;269865;269866;269867;269868;269869;269870	269863			21	
LLPAFLK	1	Unmodified	800.51601	0.5160112	5057	Q9NW08	POLR3B	DNA-directed RNA polymerase III subunit RPC2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.437	69.288	2	0.014353	61666	160511_QHF_FH_JSI11i_3	66.994	41.995			2.184	2.0908	11.921	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1134	1.9218	NaN	1	1	Median	2.257	2.2747	NaN	1	1	Median	100800000	40963000	59841000	0	0	0	0	0	0	40630000	15703000	24927000	60175000	25260000	34914000	32210	5057	30486	199487;199488	269871;269872	269871			2	
LLPAGHSVSGSLLMPGHEASSK	1	Unmodified	2174.1154	0.11538747	4897	Q9NPE2	NGRN	Neugrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	55.02	53.457	3;4	2.5192E-07	45544	160511_QHF_FH_JSI12i_3	80.98	62.442			1.1014	1.0189	14.773	4	1	Median	1.2517	1.0189	9.6674	2	0	Median	0.88532	1.0183	23.691	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	220380000	127320000	93057000	94650000	49444000	45207000	125730000	77876000	47850000	0	0	0	0	0	0	32211	4897	30487	199489;199490;199491;199492;199493;199494	269873;269874;269875;269876;269877;269878;269879;269880;269881;269882	269882			10	
LLPALAAR	0	Unmodified	823.52797	0.52797287	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	47.591	46.736	2	0.0057109	39074	160511_QHF_FH_JSI10i_3	64.803	10.266			1.2361	1.238	10.86	4	0	Median	1.7879	1.4552	NaN	1	0	Median	1.0675	1.1971	NaN	1	0	Median	1.3722	1.2803	NaN	1	0	Median	1.1135	1.1305	NaN	1	0	Median	473510000	217580000	255940000	122400000	52596000	69804000	105250000	50726000	54526000	96851000	39827000	57024000	149010000	74426000	74582000	32212	3382	30488	199495;199496;199497;199498	269883;269884;269885;269886	269884			4	
LLPALTVLDIHDNQLTSLPSAIR	0	Unmodified	2499.4061	0.40607341	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.8	0.4		1	4							1	1	1	2	101.5	101.4	3	2.2005E-30	90541	160511_QHF_FH_JSI11i_3	174.63	156.09			1.0878	1.1136	21.334	5	0	Median	1.7504	1.4452	NaN	1	0	Median	0.97124	1.1136	NaN	1	0	Median	1.1127	1.0813	NaN	1	0	Median	0.87882	0.94193	24.355	2	0	Median	1763100000	868680000	894430000	69476000	25690000	43785000	591750000	314950000	276800000	507000000	241930000	265060000	594890000	286110000	308780000	32213	4803	30489	199499;199500;199501;199502;199503	269887;269888	269887			2	
LLPAVTFDGK	1	Unmodified	1059.5964	0.59644637	2813	Q3KQV9	UAP1L1	UDP-N-acetylhexosamine pyrophosphorylase-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.094	64.193	2	0.0013717	55911	160511_QHF_FH_JSI11i_2	66.27	30.085			1.0645	1.1968	30.954	4	1	Median	1.7845	1.5221	NaN	1	0	Median	0.94679	1.1554	NaN	1	0	Median	1.1969	1.2397	NaN	1	0	Median	0.68854	0.73096	NaN	1	1	Median	110220000	56172000	54047000	24801000	12279000	12522000	23366000	10988000	12378000	35599000	16955000	18644000	26452000	15950000	10503000	32214	2813	30490	199504;199505;199506;199507	269889;269890;269891;269892	269891			3	
LLPAWIR	0	Unmodified	867.53306	0.53305825	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.278	67.981	2	0.020724	58834	160511_QHF_FH_JSI12i_3	52.231	2.1115			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32215	2993	30491	199508	269893	269893			1	
LLPDDPYEK	1	Unmodified	1088.539	0.53899107	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	46.833	44.468	2	0.00012457	40182	160511_QHF_FH_JSI10i_1	101.64	66.836			0.94164	0.9722	5.1636	5	0	Median	1.2782	1.0131	NaN	1	0	Median	0.81991	0.95419	NaN	1	0	Median	1.0082	0.9722	NaN	1	0	Median	0.89277	0.96037	9.1187	2	0	Median	4116600000	1824600000	2292000000	993150000	398180000	594970000	1042000000	459370000	582590000	1150600000	502010000	648540000	930930000	465040000	465890000	32216	2093	30492	199509;199510;199511;199512;199513	269894;269895;269896;269897;269898;269899;269900;269901;269902;269903;269904;269905;269906	269902			13	
LLPDTILEK	1	Unmodified	1040.6118	0.61176208	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	65.199	64.39	2	0.00029471	56071	160511_QHF_FH_JSI11i_2	94.302	33.944			0.6395	0.82756	18.241	5	2	Linear	0.73887	0.60802	NaN	1	0	Median	0.59841	0.73197	NaN	1	0	Median	0.86449	0.84472	2.9019	2	1	Median	0.90636	0.98567	NaN	1	1	Median	173020000	94569000	78449000	25994000	11808000	14186000	32074000	18742000	13332000	81908000	47475000	34433000	33041000	16544000	16497000	32217	5429	30493	199514;199515;199516;199517;199518;199519	269907;269908;269909;269910;269911;269912	269910			6	
LLPDTINSINLDR	0	Unmodified	1482.8042	0.80420731	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	74.288	73.013	2	0.01331	63034	160511_QHF_FH_JSI12i_2	54.198	43.966			2.0521	2.2348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0521	2.2348	NaN	1	1	Median	22667000	5939200	16728000	0	0	0	0	0	0	0	0	0	22667000	5939200	16728000	32218	2485	30494	199520	269913	269913			1	
LLPEEYHR	0	Unmodified	1055.54	0.53999412	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	26.021	25.176	3	0.055955	20917	160511_QHF_FH_JSI11i_2	15.208	5.6201			0.96362	0.98277	54.883	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5977	1.9205	NaN	1	0	Median	0.96362	0.98277	NaN	1	0	Median	0.59588	0.64701	NaN	1	0	Median	65897000	29184000	36713000	0	0	0	25525000	5495300	20030000	27847000	15250000	12597000	12525000	8438300	4086500	32219	2904	30495	199521;199522;199523	269914	269914			1	
LLPELHK	1	Unmodified	848.51199	0.51198846	3092	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	34.592	33.731	3	0.012365	29323	160511_QHF_FH_JSI11i_3	41.652	22.016			0.95864	0.8086	21.206	4	0	Linear	1.5936	1.3723	NaN	1	0	Median	0.80416	0.95409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95864	1.0097	23.062	2	0	Median	62340000	29232000	33108000	11629000	4159300	7469800	15572000	7554600	8017500	0	0	0	35139000	17518000	17621000	32220	3092	30496	199524;199525;199526;199527;199528;199529	269915;269916;269917;269918;269919;269920;269921	269915			7	
LLPELLQPYTER	0	Unmodified	1470.8082	0.80823006	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	83.656	83.051	2	4.3663E-05	73096	160511_QHF_FH_JSI11i_2	150.35	110.73			1.128	1.0979	34.976	9	6	Median	1.128	0.95698	NaN	1	0	Median	0.93502	1.1302	74.665	2	2	Median	1.1988	1.0979	33.049	3	2	Median	0.63605	0.71183	28.838	3	2	Plateau	1212000000	632950000	579040000	161100000	66685000	94418000	272060000	147270000	124790000	488110000	261740000	226370000	290710000	157260000	133460000	32221	2346	30497	199530;199531;199532;199533;199534;199535;199536;199537;199538;199539	269922;269923;269924;269925;269926;269927;269928;269929;269930;269931;269932;269933;269934	269930			13	
LLPEQLIK	1	Unmodified	952.59572	0.59571809	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	64.852	64.042	2	0.0027585	55523	160511_QHF_FH_JSI11i_2	77.674	40.653			0.92551	1.0237	8.3672	5	0	Median	1.1597	0.97716	NaN	1	0	Median	0.82666	1.0237	NaN	1	0	Median	0.99148	0.97117	15.365	2	0	Median	0.92551	1.0416	NaN	1	0	Median	387670000	206090000	181580000	67371000	35595000	31776000	78887000	45097000	33790000	150280000	75511000	74772000	91133000	49891000	41243000	32222	3862	30498	199540;199541;199542;199543;199544	269935;269936;269937;269938	269936			4	
LLPEYPGVLSDVQEEK	1	Unmodified	1814.9302	0.93019569	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	2	3	3	80.055	79.364	2;3	1.8866E-05	72213	160511_QHF_FH_JSI11i_1	87.932	76.662			0.98446	0.90443	13.417	11	0	Median	1.0358	0.88214	4.1867	3	0	Plateau	0.66997	0.81196	11.993	2	0	Median	1.0732	1.0394	10.192	3	0	Median	0.98446	1.0861	9.3566	3	0	Median	547750000	280730000	267020000	106720000	59866000	46855000	124380000	72635000	51745000	189280000	79998000	109280000	127360000	68229000	59132000	32223	763	30499	199545;199546;199547;199548;199549;199550;199551;199552;199553;199554;199555	269939;269940;269941;269942;269943;269944;269945;269946;269947;269948;269949;269950;269951;269952;269953;269954;269955;269956;269957	269939			19	
LLPFLAPGAR	0	Unmodified	1053.6335	0.63350057	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		76.121	75.17	2	0.0005442	66986	160511_QHF_FH_JSI11i_3	82.671	36.656			1.9121	2.027	60.241	3	3	Median	0.91895	0.76743	NaN	1	1	Median	1.9121	2.3125	NaN	1	1	Median	2.2004	2.027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	322710000	137090000	185620000	101500000	52883000	48616000	84178000	34524000	49654000	137030000	49679000	87350000	0	0	0	32224	4428	30500	199556;199557;199558;199559	269958;269959;269960;269961	269959			4	
LLPGIEVLWTGPK	1	Unmodified	1421.8282	0.82823722	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	101.33	101.17	2	2.7917E-09	87014	160511_QHF_FH_JSI12i_2	104.79	90.588			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32225	421	30501	199560;199561	269962;269963	269962			2	
LLPGILALYK	1	Unmodified	1099.7005	0.70051751	3626	Q8NDA8	MROH1	Maestro heat-like repeat-containing protein family member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.348	94.343	2	0.021774	81789	160511_QHF_FH_JSI12i_3	49.097	27.649			1.8484	1.991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8484	1.991	NaN	1	1	Median	11616000	3274300	8341800	0	0	0	0	0	0	0	0	0	11616000	3274300	8341800	32226	3626	30502	199562	269964	269964			1	
LLPGLEADSKPGR	1	Unmodified	1351.746	0.74596415	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	40.566	40.425	2;3	2.6385E-05	35445	160511_QHF_FH_JSI11i_3	83.53	54.725			1.1359	1.0909	24.076	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.153	1.0909	NaN	1	0	Median	0.93312	0.95469	32.26	2	2	Median	353030000	166700000	186330000	0	0	0	0	0	0	201800000	85611000	116190000	151230000	81090000	70137000	32227	3382	30503	199563;199564;199565;199566	269965;269966;269967;269968;269969	269965			5	
LLPGPENHR	0	Unmodified	1031.5512	0.55122751	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	17.345	16.509	2;3	3.2646E-05	13508	160511_QHF_FH_JSI10i_3	76.17	55.299			1.1688	1.1058	14.387	4	0	Median	1.5499	1.2662	7.3436	2	0	Median	0.89058	1.0171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94917	0.98167	NaN	1	0	Median	318200000	147920000	170270000	62653000	22522000	40130000	110670000	56394000	54279000	0	0	0	144870000	69008000	75863000	32228	3483	30504	199567;199568;199569;199570;199571	269970;269971;269972;269973;269974;269975	269971			6	
LLPHKVFEGNRPTNSIVFTK	2	Acetyl (K)	2338.2798	0.27975068	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	73.369	64.638	3;4	2.8843E-06	33815	160513_QHF_FH_JSI12Kac_6	142.85	112.76		+	0.56239	0.60853	126.77	7	2	Median	1.2863	1.1032	NaN	1	0	Median	0.86352	1.0284	8.2681	2	0	Median	0.14179	0.13339	148.02	2	1	Median	0.22655	0.24084	131.09	2	1	Median	623870000	431320000	192560000	50127000	22097000	28030000	288960000	162290000	126670000	228580000	202650000	25931000	56202000	44275000	11927000	32229	856;75	30505	199572;199573;199574;199575;199576;199577;199578	269976;269977;269978;269979;269980;269981;269982;269983	269980	52		8	
LLPHMHNIVEYMLQR	0	Unmodified	1892.9753	0.97532893	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	3	1	1	81.951	74.725	3;4	9.565E-17	41375	160513_QHF_FH_JSI10Kac_6	133.66	110.24			1.1761	1.1792	37.935	6	2	Median	1.5156	1.2894	32.879	2	1	Median	1.0434	1.2389	51.584	3	1	Median	1.1469	1.1224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2189600000	1140000000	1049700000	198590000	69837000	128750000	1946500000	1048000000	898470000	44602000	22169000	22432000	0	0	0	32230	3914	30506	199579;199580;199581;199582;199583;199584;199585	269984;269985;269986;269987;269988;269989	269987			6	
LLPHMHNIVEYMLQR	0	Oxidation (M)	1908.9702	0.97024356	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	72.713	64.139	3;4	3.4737E-24	36413	160513_QHF_FH_JSI10Kac_6	151.9	127.18			1.0623	1.2198	21.003	5	2	Median	1.4219	1.2314	NaN	1	0	Median	1.0541	1.2309	1.2858	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86301	0.93603	29.359	2	2	Median	218980000	104980000	114010000	47104000	19984000	27120000	139420000	67328000	72092000	0	0	0	32460000	17664000	14796000	32231	3914	30506	199586;199587;199588;199589;199590	269990;269991;269992;269993;269994;269995	269994		2346;2347	5	
LLPHMHNIVEYMLQR	0	2 Oxidation (M)	1924.9652	0.96515818	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	2	0				By MS/MS	16	0									1				1	57.688	47.811	3	0.025161	24997	160513_QHF_FH_JSI12Kac_6	35.35	24.294			1.5753	1.6898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5753	1.6898	NaN	1	1	Median	6620800	2947700	3673100	0	0	0	0	0	0	0	0	0	6620800	2947700	3673100	32232	3914	30506	199591	269996	269996		2346;2347	1	
LLPHQLYGVVPQA	0	Unmodified	1433.8031	0.8030851	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.877	74.019	2	0.0012122	63932	160511_QHF_FH_JSI12i_2	66.27	56.838			1.0774	1.2502	19.729	4	0	Median	1.7978	1.5955	NaN	1	0	Median	1.1369	1.3946	NaN	1	0	Median	1.021	1.039	NaN	1	0	Median	0.99488	1.1208	NaN	1	0	Median	213920000	103130000	110790000	46311000	18469000	27843000	33393000	17689000	15704000	85053000	40988000	44065000	49165000	25985000	23180000	32233	1150	30507	199592;199593;199594;199595	269997;269998;269999;270000;270001;270002	269997			5	
LLPLAGLYLVQGLPYGLQSGLLPVLLR	0	Unmodified	2875.7303	0.73030808	4056	Q96ES6	MFSD3	Major facilitator superfamily domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.77	97.054	3;4	2.3203E-28	57430	160513_QHF_FH_JSI10Kac_6	126.04	122.06			1.0557	1.257	4.0307	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0557	1.257	4.0307	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1449700000	680650000	769000000	0	0	0	1449700000	680650000	769000000	0	0	0	0	0	0	32234	4056	30508	199596;199597	270003;270004;270005	270005			3	
LLPLEEHYR	0	Unmodified	1168.6241	0.6240581	4727;5163	Q9H4M9;Q9NZN4	EHD1;EHD2	EH domain-containing protein 1;EH domain-containing protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.42		8	1						4	3	3	4	3	45.792	42.323	2;3	1.7762E-05	36325	160511_QHF_FH_JSI12i_2	82.645	78.491			1.1018	1.0923	33.764	13	3	Median	1.2229	1.0113	39.989	3	0	Median	0.95338	1.1222	29.477	3	1	Median	1.1649	1.1592	14.802	4	0	Median	0.88	0.97838	58.657	3	2	Median	1636000000	788860000	847180000	264080000	121840000	142240000	329630000	194050000	135580000	762850000	340490000	422360000	279470000	132470000	146990000	32235	4727;5163	30509	199598;199599;199600;199601;199602;199603;199604;199605;199606;199607;199608;199609;199610	270006;270007;270008;270009;270010;270011;270012;270013;270014;270015;270016;270017	270007			12	
LLPLGATDTAVFDVR	0	Unmodified	1586.8668	0.86680757	4063	Q96EY5	MVB12A	Multivesicular body subunit 12A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	91.402	90.733	2	0.0136	79824	160511_QHF_FH_JSI11i_2	67.153	50.9			0.93273	0.9478	14.181	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0665	1.0478	NaN	1	1	Median	0.81573	0.85737	NaN	1	0	Median	26473000	14522000	11951000	0	0	0	0	0	0	12926000	6497000	6429100	13547000	8025400	5521800	32236	4063	30510	199611;199612	270018;270019	270019			2	
LLPLHFAVDPGK	1	Unmodified	1305.7445	0.74450759	3046	Q6GQQ9;Q8TE49	OTUD7B;OTUD7A	OTU domain-containing protein 7B;OTU domain-containing protein 7A	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	70.989	70.395	3	2.7528E-05	62704	160511_QHF_FH_JSI11i_3	86.772	81.674			0.97336	1.0047	13.785	3	0	Plateau	1.5255	1.2714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0792	0.99817	NaN	1	0	Median	0.96192	1.0047	NaN	1	0	Median	141660000	80417000	61240000	13468000	5150300	8318100	0	0	0	53473000	29680000	23793000	74715000	45587000	29129000	32237	3046	30511	199613;199614;199615	270020;270021;270022;270023	270021			3	
LLPLLQEALSAYFDSMK	1	Oxidation (M)	1954.0122	0.012151176	3310	Q86TP1	PRUNE	Protein prune homolog	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	103.24	103.25	3	0.00011876	90002	160511_QHF_FH_JSI12i_3	65.225	56.062			0.52311	0.54793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52311	0.54793	NaN	1	0	Median	21921000	13088000	8832800	0	0	0	0	0	0	0	0	0	21921000	13088000	8832800	32238	3310	30512	199616	270024	270024		2244	1	
LLPLTQYPDSSVR	0	Unmodified	1487.7984	0.79839365	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.863	62.959	2	4.2488E-05	54127	160511_QHF_FH_JSI12i_2	114.4	72.953			0.80188	0.81662	10.541	4	0	Median	0.92157	0.78601	NaN	1	0	Median	0.68109	0.84842	NaN	1	0	Median	0.74299	0.76201	NaN	1	0	Median	0.86545	0.96546	NaN	1	0	Median	386730000	232290000	154440000	76609000	42951000	33658000	88149000	56311000	31838000	137290000	86139000	51148000	84680000	46886000	37794000	32239	4428	30513	199617;199618;199619;199620	270025;270026;270027;270028;270029;270030;270031	270026			7	
LLPMFIIVVPGMISR	0	Unmodified	1684.9772	0.97722641	1811	P53794	SLC5A3	Sodium/myo-inositol cotransporter	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.089	93.369	2	0.0011211	54774	160513_QHF_FH_JSI10Kac_6	99.522	73.403			1.2687	1.5078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2687	1.5078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161740000	70514000	91229000	0	0	0	161740000	70514000	91229000	0	0	0	0	0	0	32240	1811	30514	199621	270032	270032			1	
LLPPFKPQVTSEVDTR	1	Unmodified	1825.9938	0.993799	1378	P31751	AKT2	RAC-beta serine/threonine-protein kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		64.272	63.27	3	0.00053285	56171	160511_QHF_FH_JSI11i_3	69.331	43.773			1.3141	1.0914	27.248	3	1	Plateau	1.3411	1.0914	NaN	1	0	Median	0.70121	0.80511	NaN	1	0	Median	0.66335	0.63369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	340280000	194230000	146050000	81164000	37376000	43788000	74767000	45160000	29606000	184350000	111700000	72657000	0	0	0	32241	1378	30515	199622;199623;199624	270033;270034;270035;270036;270037;270038;270039;270040	270033			8	
LLPPGAVVAVGASGGK	1	Unmodified	1391.8136	0.81364979	3292	Q7Z7A3	CTU1	Cytoplasmic tRNA 2-thiolation protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.08	62.794	2	0.0022368	54083	160511_QHF_FH_JSI12i_3	64.55	36.152			2.5251	2.6032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5251	2.6032	NaN	1	1	Median	23433000	5182200	18251000	0	0	0	0	0	0	0	0	0	23433000	5182200	18251000	32242	3292	30516	199625	270041	270041			1	
LLPPLLQIVCK	1	Unmodified	1292.789	0.78901494	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.54	101.5	2	3.2582E-05	84067	160511_QHF_FH_JSI10i_3	98.392	88.611			0.96911	1.0918	9.5712	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87042	0.97409	NaN	1	0	Median	0.96911	0.90713	NaN	1	1	Median	1.0713	1.0964	NaN	1	0	Median	559680000	284100000	275580000	0	0	0	135680000	74352000	61324000	160390000	81500000	78891000	263610000	128250000	135360000	32243	3741	30517	199626;199627;199628	270042;270043;270044;270045	270043			4	
LLPPYLR	0	Unmodified	870.53272	0.5327239	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	2	2	57.712	56.829	2	0.002611	46656	160511_QHF_FH_JSI9i_3	109.88	83.772			1.0451	1.0419	26.581	8	4	Median	1.2988	1.0772	7.5337	2	1	Median	0.85411	1.0195	17.682	2	1	Median	1.0451	1.0269	4.8557	2	1	Median	0.69858	0.7411	52.785	2	1	Median	2340900000	1276700000	1064200000	510330000	244170000	266160000	445660000	250400000	195260000	583820000	312600000	271230000	801050000	469490000	331560000	32244	1566	30518	199629;199630;199631;199632;199633;199634;199635;199636;199637	270046;270047;270048;270049;270050;270051;270052;270053;270054;270055;270056;270057;270058	270051			13	
LLPQFLLHLDK	1	Unmodified	1335.7915	0.79145778	3528	Q8N4J0	C9orf41	UPF0586 protein C9orf41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	89.441	89.043	3	3.0962E-06	77239	160511_QHF_FH_JSI12i_3	106.49	97.979			0.84222	0.76053	87.113	6	3	Median	1.0434	0.84683	NaN	1	0	Median	0.50758	0.56291	NaN	1	0	Median	1.3694	1.2749	154.04	2	1	Median	1.2531	1.2969	90.68	2	2	Median	237110000	91698000	145410000	23793000	8762600	15031000	20516000	10367000	10148000	61991000	27536000	34456000	130810000	45033000	85777000	32245	3528	30519	199638;199639;199640;199641;199642;199643	270059;270060;270061;270062;270063;270064;270065;270066;270067;270068;270069;270070	270070			12	
LLPQGLAVYASPENK	1	Unmodified	1598.8668	0.86680757	4544	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.91	71.024	3	0.00074532	62275	160511_QHF_FH_JSI11i_2	55.531	50.354			0.97052	0.91792	32.797	4	1	Median	1.0388	0.89972	NaN	1	1	Median	0.60528	0.75179	NaN	1	0	Median	0.90678	0.93648	NaN	1	0	Median	1.4684	1.6085	NaN	1	0	Median	99528000	58728000	40800000	14253000	10774000	3479000	27971000	17362000	10609000	34920000	19016000	15904000	22384000	11576000	10808000	32246	4544	30520	199644;199645;199646;199647	270071;270072;270073;270074;270075	270074			5	
LLPQGTVIFEDISIEHFEGTVTK	1	Unmodified	2572.3425	0.3424701	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	10.6	6.62		1	1						3	1	1	1	2	95.784	90.974	3	9.3119E-20	87919	160511_QHF_FH_JSI12i_3	146.76	123.76			0.97965	1.0011	23.307	5	0	Median	1.3912	1.1922	NaN	1	0	Median	0.53268	0.6391	NaN	1	0	Median	1.0272	1.0186	NaN	1	0	Median	0.90714	0.94857	7.6294	2	0	Median	818450000	402650000	415800000	54248000	26717000	27531000	92635000	44109000	48526000	208460000	87785000	120680000	463100000	244040000	219070000	32247	543	30521	199648;199649;199650;199651;199652	270076;270077;270078;270079;270080;270081;270082;270083	270078			8	
LLPQLTYLDGYDRDDK	1	Unmodified	1923.9578	0.95780742	1487	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.34	0.543	1	17	11							5	6	8	10	79.143	78.584	2;3	4.4973E-16	67550	160511_QHF_FH_JSI12i_3	146	134.74			0.90192	0.90599	37.031	22	8	Median	1.0494	0.92748	5.6596	4	1	Median	0.78362	0.98214	14.131	5	1	Median	0.93894	0.89483	66.566	6	3	Median	0.80669	0.85208	24.57	7	3	Median	3489300000	1889800000	1599500000	250290000	121940000	128350000	425370000	236100000	189270000	1217500000	548710000	668740000	1596200000	983010000	613180000	32248	1487	30522	199653;199654;199655;199656;199657;199658;199659;199660;199661;199662;199663;199664;199665;199666;199667;199668;199669;199670;199671;199672;199673;199674;199675;199676;199677;199678;199679;199680;199681	270084;270085;270086;270087;270088;270089;270090;270091;270092;270093;270094;270095;270096;270097;270098;270099;270100;270101;270102;270103;270104;270105;270106;270107;270108;270109;270110;270111;270112;270113;270114;270115;270116;270117;270118;270119;270120;270121;270122;270123;270124;270125;270126;270127;270128;270129;270130;270131;270132;270133;270134;270135;270136;270137	270129			54	
LLPSALGVK	1	Unmodified	896.5695	0.56950333	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	55.275	54.501	2	0.0031385	46722	160511_QHF_FH_JSI12i_3	60.478	47.988			1.2031	1.2334	35.495	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3898	1.5853	NaN	1	0	Median	1.0415	0.95963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62514000	27993000	34521000	0	0	0	13423000	4914500	8508600	49091000	23078000	26013000	0	0	0	32249	2318	30523	199682;199683;199684	270138;270139;270140	270140			3	
LLPSAPQTLPDGPLASPAR	0	Unmodified	1900.0418	0.04181182	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	76.447	75.574	2	6.4057E-08	66367	160511_QHF_FH_JSI11i_2	109.22	73.807			0.79172	0.97984	30.078	3	1	Median	NaN	NaN	NaN	0	0	Median	0.79172	0.97984	NaN	1	1	Median	1.2752	1.305	NaN	1	0	Median	0.68052	0.71522	NaN	1	0	Median	44559000	21042000	23517000	0	0	0	9977300	6496000	3481300	20995000	7012400	13982000	13587000	7534000	6053100	32250	235	30524	199685;199686;199687;199688	270141;270142;270143;270144;270145	270143			5	
LLPSGQR	0	Unmodified	769.44464	0.44463717	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		16.68	16.68	2	0.027274	13831	160511_QHF_FH_JSI11i_3	46.37	0.41853			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32251	1898	30525	199689	270146	270146			1	
LLPSLIGR	0	Unmodified	867.55419	0.55418762	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	62.282	61.182	2	0.0025673	50190	160511_QHF_FH_JSI9i_3	79.116	6.0772			0.78202	0.83834	12.517	3	0	Median	1.0249	0.83834	NaN	1	0	Median	0.78202	0.89035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68911	0.69999	NaN	1	0	Median	322810000	176970000	145840000	121140000	59358000	61779000	100200000	63311000	36893000	0	0	0	101470000	54300000	47172000	32252	596	30526	199690;199691;199692	270147;270148;270149	270148			3	
LLPSSHVAR	0	Unmodified	978.56106	0.56106391	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			18.354	17.221	2;3	0.00021722	14094	160511_QHF_FH_JSI10i_3	71.614	41.05			1.286	1.0712	9.0612	3	0	Median	1.305	1.0734	0.2927	2	0	Median	0.79505	0.91753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158910000	71639000	87270000	91636000	34610000	57026000	67273000	37029000	30244000	0	0	0	0	0	0	32253	28	30527	199693;199694;199695	270150;270151;270152;270153;270154	270151			5	
LLPVLLSTAQEADPEVR	0	Unmodified	1850.0149	0.014928368	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.624	3	12	5							3	5	7	5	90.055	89.649	2;3	4.7779E-11	79824	160511_QHF_FH_JSI10i_2	109.79	103.53			3.5792	3.419	156.06	15	14	Median	7.8097	6.6725	11.154	2	2	Median	2.3442	2.6856	229.82	4	4	Median	3.4766	3.3209	169.87	6	6	Median	2.568	2.8098	63.358	3	2	Median	353950000	127630000	226320000	47154000	17049000	30105000	96284000	51086000	45198000	129640000	32017000	97625000	80874000	27480000	53393000	32254	3741	30528	199696;199697;199698;199699;199700;199701;199702;199703;199704;199705;199706;199707;199708;199709;199710;199711;199712;199713;199714;199715	270155;270156;270157;270158;270159;270160;270161;270162;270163;270164;270165;270166;270167;270168;270169;270170;270171;270172;270173;270174;270175	270173			21	
LLPVLVHTFWIDTK	1	Unmodified	1680.9603	0.96031402	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.69			2						11	4	5	1	3	92.536	85.84	2;3	2.145E-16	44339	160513_QHF_FH_JSI12Kac_6	178.81	140.06			1.2718	1.2979	148.92	13	11	Median	2.9619	2.4692	227.47	4	3	Median	0.8433	0.96278	109.05	5	4	Median	5.3266	5.0897	NaN	1	1	Median	1.2177	1.2979	134.47	3	3	Median	3788300000	1961300000	1827000000	1012400000	368620000	643750000	1742200000	1114400000	627790000	301420000	66762000	234660000	732290000	411480000	320810000	32255	2429	30529	199716;199717;199718;199719;199720;199721;199722;199723;199724;199725;199726;199727;199728	270176;270177;270178;270179;270180;270181;270182;270183;270184;270185;270186;270187;270188;270189;270190	270185			15	
LLPYALHK	1	Unmodified	953.56984	0.56983769	5392	Q9UL63	MKLN1	Muskelin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	41.296	40.706	3	0.0050442	33377	160511_QHF_FH_JSI9i_3	54.611	45.748			3.5913	2.8378	65.917	3	1	Median	3.5913	2.8378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.637	5.1336	NaN	1	0	Median	1.3721	1.3766	NaN	1	0	Median	151880000	52610000	99265000	30482000	11271000	19211000	0	0	0	32644000	6031500	26613000	88749000	35307000	53442000	32256	5392	30530	199729;199730;199731;199732	270191;270192;270193;270194	270192			4	
LLPYLAAVYALDHFSK	1	Unmodified	1819.9873	0.98725705	269	O15254	ACOX3	Peroxisomal acyl-coenzyme A oxidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			98.551	95.598	3	0.00065114	51546	160513_QHF_FH_JSI10Kac_6	72.433	60.665			1.3264	1.3429	63.112	2	1	Median	1.0146	0.85948	NaN	1	0	Median	1.7341	2.0983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76130000	35584000	40546000	11713000	5207200	6505600	64417000	30377000	34040000	0	0	0	0	0	0	32257	269	30531	199733;199734	270195;270196	270196			1	
LLQAAAGASAR	0	Unmodified	1027.5774	0.57744226	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	17.952	17.223	2	0.00097068	14531	160511_QHF_FH_JSI10i_2	81.972	7.5565			0.91267	1.0187	40.475	4	2	Median	0.81109	0.70316	NaN	1	1	Median	0.81695	0.99304	NaN	1	0	Median	1.0196	1.0451	NaN	1	0	Median	1.6519	1.8663	NaN	1	1	Median	236550000	118680000	117870000	48911000	22831000	26080000	57929000	32501000	25429000	79225000	42009000	37216000	50485000	21341000	29144000	32258	4258	30532	199735;199736;199737;199738	270197;270198;270199;270200;270201;270202	270201			6	
LLQAETASNSAR	0	Unmodified	1259.647	0.64697839	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	18.548	16.551	2	2.4299E-07	13463	160511_QHF_FH_JSI11i_2	130.94	67.461			0.97169	1.0355	13.613	10	2	Median	1.122	0.94144	22.612	2	1	Median	0.79821	0.93214	16.5	2	0	Median	1.0645	1.0641	19.119	3	1	Median	0.97348	1.0236	2.8311	3	0	Median	758360000	399000000	359360000	171740000	91178000	80565000	182620000	99272000	83349000	200210000	102450000	97757000	203790000	106100000	97688000	32259	2587	30533	199739;199740;199741;199742;199743;199744;199745;199746;199747;199748;199749	270203;270204;270205;270206;270207;270208;270209;270210;270211;270212;270213;270214;270215;270216;270217;270218;270219;270220	270216			18	
LLQAFLER	0	Unmodified	988.57057	0.57056597	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	3.58		4	8						1	3	3	4	3	58.686	57.148	2	1.7839E-05	50576	160511_QHF_FH_JSI11i_3	147.34	60.469			3.6525	4.0432	175.81	12	11	Median	5.9081	4.9085	3.2659	2	2	Median	3.3454	4.0289	268.95	3	2	Median	1.5026	1.4936	171.53	4	4	Median	2.6376	2.9749	180.02	3	3	Median	3998600000	1961600000	2036900000	881490000	445240000	436250000	913340000	403830000	509510000	1196400000	582250000	614160000	1007300000	530310000	476990000	32260	1844	30534	199750;199751;199752;199753;199754;199755;199756;199757;199758;199759;199760;199761;199762	270221;270222;270223;270224;270225;270226;270227;270228;270229;270230;270231;270232;270233	270222			13	
LLQAGEENQVLELLIHR	0	Unmodified	1974.0898	0.089824645	4906	Q9NPJ6	MED4	Mediator of RNA polymerase II transcription subunit 4	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	98.124	98.134	3	0.00084631	85083	160511_QHF_FH_JSI12i_3	71.601	56.179			1.4011	1.3571	4.7676	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5099	1.4036	NaN	1	0	Median	1.3002	1.3121	NaN	1	0	Median	67052000	22295000	44757000	0	0	0	0	0	0	31502000	10676000	20827000	35550000	11619000	23930000	32261	4906	30535	199763;199764	270234	270234			0	
LLQALAQYQNHLQEQPR	0	Unmodified	2049.0756	0.075571565	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.57	0.495		3	4							4	3			58.005	56.645	3	3.5434E-11	47470	160511_QHF_FH_JSI10i_3	109.04	95.169			1.7416	2.05	115.5	5	5	Median	2.6316	2.1696	143.66	3	3	Median	0.82804	0.94624	109.33	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144300000	72409000	71887000	107240000	50962000	56280000	37054000	21448000	15606000	0	0	0	0	0	0	32262	4361	30536	199765;199766;199767;199768;199769;199770;199771	270235;270236;270237;270238;270239;270240;270241	270236			7	
LLQALHIDGPR	0	Unmodified	1231.7037	0.70370541	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			50.041	48.474	3	0.002403	40513	160511_QHF_FH_JSI10i_3	41.242	24.988			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32263	4997	30537	199772	270242	270242			1	
LLQAMEPVHVAR	0	Unmodified	1362.7442	0.74419001	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							1	3	6	4	44.642	43.999	2;3	2.5438E-05	37419	160511_QHF_FH_JSI12i_3	66.538	65.216			1.0478	1.1378	49.499	12	5	Median	0.65254	0.55412	NaN	1	0	Median	0.40422	0.49633	34.465	2	1	Median	1.3692	1.312	48.54	5	3	Median	1.1921	1.2568	15.959	4	1	Median	2502300000	1251900000	1250400000	159850000	64714000	95139000	393750000	260770000	132990000	1077100000	479500000	597630000	871600000	446950000	424650000	32264	2730	30538	199773;199774;199775;199776;199777;199778;199779;199780;199781;199782;199783;199784;199785;199786	270243;270244;270245;270246;270247;270248;270249;270250;270251;270252;270253;270254;270255;270256;270257;270258;270259;270260;270261;270262;270263;270264;270265	270262			23	
LLQAQGVEVPSK	1	Unmodified	1267.7136	0.71360139	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.64	5	3					3			2	3	3	3	46.216	42.735	2;3	6.0293E-11	39070	160511_QHF_FH_JSI12i_1	149.23	108.2			0.9734	0.99511	38.415	11	3	Median	1.2128	1.0285	23.602	2	0	Median	0.83972	0.99511	31.884	3	1	Plateau	1.1959	1.1542	8.3845	3	0	Plateau	0.49891	0.5333	51.414	3	2	Median	1838800000	911360000	927430000	371270000	164190000	207080000	462940000	265030000	197910000	541990000	240450000	301540000	462600000	241700000	220900000	32265	454	30539	199787;199788;199789;199790;199791;199792;199793;199794;199795;199796;199797	270266;270267;270268;270269;270270;270271;270272;270273;270274;270275;270276;270277;270278	270271			13	
LLQCYPPPEDAAVK	1	Unmodified	1599.7967	0.79667909	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.487	47.806	2	0.00023721	43431	160511_QHF_FH_JSI12i_1	107.06	76.491			0.70471	0.75883	46.585	4	0	Median	0.45341	0.38381	NaN	1	0	Median	0.64647	0.77488	NaN	1	0	Median	0.76821	0.74311	NaN	1	0	Median	1.1089	1.1859	NaN	1	0	Median	189570000	102940000	86631000	29831000	18116000	11715000	54252000	31266000	22986000	61151000	32295000	28856000	44340000	21267000	23074000	32266	726	30540	199798;199799;199800;199801	270279;270280;270281;270282;270283;270284	270281			6	
LLQDANYNVEK	1	Unmodified	1305.6565	0.65648044	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	34.276	33.745	2	2.1298E-09	30503	160511_QHF_FH_JSI12i_1	131.12	79.261			0.7564	0.79127	60.554	5	3	Median	0.54308	0.45064	NaN	1	1	Median	0.76983	0.89504	NaN	1	0	Median	1.0411	1.0102	100.78	2	2	Median	0.7564	0.79127	NaN	1	0	Median	706250000	349800000	356460000	119330000	69283000	50051000	162340000	82491000	79845000	287570000	134160000	153410000	137020000	63868000	73147000	32267	598	30541	199802;199803;199804;199805;199806	270285;270286;270287;270288;270289;270290	270287			6	
LLQDFFNGK	1	Unmodified	1080.5604	0.56039521	985;1827;1108	P11142;P54652;P17066	HSPA8;HSPA2;HSPA6	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.61	4	5	4				3	6	5	8	5	7	7	67.245	61.17	2	2.421E-11	33119	160513_QHF_FH_JSI11Kac_6	157.86	99.693			1.0907	1.1663	51.695	25	18	Median	1.5997	1.3416	55.901	7	6	Median	1.2661	1.4879	36.997	5	4	Median	0.95786	0.95391	65.688	6	3	Median	1.0907	1.1663	51.721	7	5	Median	22577000000	11168000000	11408000000	6707900000	3693300000	3014600000	3972700000	2150100000	1822600000	6444900000	2271100000	4173800000	5451100000	3053800000	2397300000	32268	985;1827;1108	30542	199807;199808;199809;199810;199811;199812;199813;199814;199815;199816;199817;199818;199819;199820;199821;199822;199823;199824;199825;199826;199827;199828;199829;199830;199831;199832;199833	270291;270292;270293;270294;270295;270296;270297;270298;270299;270300;270301;270302;270303;270304;270305;270306;270307;270308;270309;270310;270311;270312;270313;270314;270315;270316;270317;270318;270319;270320;270321;270322;270323;270324;270325;270326;270327;270328;270329;270330;270331	270303			41	
LLQDFFNGR	0	Unmodified	1108.5665	0.56654322	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	2	3	3	64.922	61.142	2	3.2692E-11	52877	160511_QHF_FH_JSI12i_3	157.58	125.22			0.99492	0.98512	45.689	12	6	Median	1.4461	1.2276	71.221	4	2	Median	0.76048	0.88823	20.385	2	1	Median	0.99156	0.96089	26.555	3	2	Median	1.2244	1.2274	31.638	3	1	Median	24422000000	12669000000	11753000000	3256500000	1863300000	1393100000	4803900000	2798700000	2005200000	8185100000	4071000000	4114100000	8176900000	3936000000	4240900000	32269	954	30543	199834;199835;199836;199837;199838;199839;199840;199841;199842;199843;199844;199845	270332;270333;270334;270335;270336;270337;270338;270339;270340;270341;270342;270343;270344;270345;270346;270347;270348;270349	270347			17	
LLQDFFNGRDLNK	1	Unmodified	1578.8154	0.8154407	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	63.669	62.74	2;3	1.1962E-09	52464	160511_QHF_FH_JSI10i_3	160.15	136.77			1.1696	1.0309	50.127	8	3	Median	1.0537	0.84664	12.393	2	0	Median	1.4021	1.6043	30.43	3	1	Plateau	1.2059	1.15	NaN	1	0	Median	1.3383	1.3693	112.38	2	2	Median	1992700000	975740000	1016900000	602100000	291730000	310370000	795950000	382140000	413810000	319220000	174200000	145020000	275400000	127670000	147730000	32270	954	30544	199846;199847;199848;199849;199850;199851;199852;199853;199854	270350;270351;270352;270353;270354;270355;270356;270357;270358;270359;270360;270361;270362	270355			13	
LLQDFNR	0	Unmodified	904.47667	0.47666558	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.27	1	4	1				1	3		2	2	3	3	32.18	27.79	2	0.002544	24606	160511_QHF_FH_JSI10i_2	138.07	57.697			1.1791	1.2801	25.987	10	1	Median	1.2895	1.0539	21.823	2	0	Median	1.17	1.4295	7.6182	2	1	Median	1.3174	1.3134	44.819	3	0	Median	1.0236	1.1278	16.47	3	0	Plateau	2845500000	1400400000	1445100000	626200000	298190000	328010000	557990000	324730000	233260000	1045700000	472970000	572780000	615520000	304520000	311000000	32271	2094	30545	199855;199856;199857;199858;199859;199860;199861;199862;199863;199864	270363;270364;270365;270366;270367;270368;270369;270370;270371;270372;270373	270372			11	
LLQDHPWLLSQNLVVKPDQLIK	2	Unmodified	2596.4741	0.47409339	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.84	0.365		3	16							8	6	2	3	98.281	98.1	3;4	8.8469E-121	85836	160511_QHF_FH_JSI11i_3	269.07	247.2			0.90818	0.94413	19.041	19	2	Plateau	0.98032	0.80472	20.656	8	1	Median	0.74094	0.88264	12.822	6	0	Median	0.98266	0.92197	3.5219	2	0	Median	0.9681	0.99156	34.878	3	1	Plateau	4045800000	1835400000	2210400000	399450000	172040000	227410000	590060000	275250000	314810000	936800000	388000000	548800000	2119400000	1000100000	1119300000	32272	1798	30546	199865;199866;199867;199868;199869;199870;199871;199872;199873;199874;199875;199876;199877;199878;199879;199880;199881;199882;199883	270374;270375;270376;270377;270378;270379;270380;270381;270382;270383;270384;270385;270386;270387;270388;270389;270390;270391;270392;270393;270394;270395;270396;270397;270398;270399;270400;270401;270402;270403;270404;270405;270406;270407;270408;270409;270410;270411;270412;270413;270414;270415;270416;270417;270418;270419;270420;270421;270422;270423;270424;270425;270426	270383			52	
LLQEAALDMAK	1	Unmodified	1201.6377	0.63765925	5809				yes	yes	0	0	0	0	By MS/MS				2	0		1								1				71.015	70.162	2	0.062023	61780	160511_QHF_FH_JSI9i_2	33.263	0	+		1.0742	0.91339	NaN	1	0	Median	1.0742	0.91339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60534000	33059000	27475000	60534000	33059000	27475000	0	0	0	0	0	0	0	0	0	32273	5809	30547	199884	270427	270427			1	
LLQEALEAEER	0	Unmodified	1299.667	0.66704513	4145	Q96JY6	PDLIM2	PDZ and LIM domain protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.903	41.975	2	0.00053258	36154	160511_QHF_FH_JSI11i_2	85.355	51.102			0.98506	1.077	38.756	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76939	0.81883	NaN	1	1	Median	1.2612	1.4166	NaN	1	0	Median	84927000	45110000	39817000	0	0	0	0	0	0	38374000	21672000	16702000	46553000	23438000	23115000	32274	4145	30548	199885;199886	270428;270429	270429			2	
LLQEAQQS	0	Unmodified	915.46616	0.46616048	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		20.497	13.108	2	0.058489	6362	160513_QHF_FH_JSI11Kac_1	42.109	30.741			1.1214	1.0688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1214	1.0688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3756800	2101600	1655300	0	0	0	0	0	0	3756800	2101600	1655300	0	0	0	32275	4003	30549	199887	270430	270430			1	
LLQEHNNALK	1	Unmodified	1178.6408	0.6407708	4016	Q96CV9	OPTN	Optineurin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				16.165	15.11	4	0.047582	12047	160511_QHF_FH_JSI9i_3	25.938	0.50169			1.1728	0.94955	NaN	1	0	Median	1.1728	0.94955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85938000	31378000	54560000	85938000	31378000	54560000	0	0	0	0	0	0	0	0	0	32276	4016	30550	199888	270431	270431			0	
LLQEQHQLSSR	0	Unmodified	1337.7052	0.70516197	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		15.324	15.324	3	0.0074373	12570	160511_QHF_FH_JSI11i_3	39.424	24.738			1.0982	1.0469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0982	1.0469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29614000	12492000	17122000	0	0	0	0	0	0	29614000	12492000	17122000	0	0	0	32277	3009	30551	199889	270432	270432			1	
LLQFLAGQQVNPTK	1	Unmodified	1555.8722	0.8722273	460	O60921	HUS1	Checkpoint protein HUS1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	67.536	67.436	2	3.4196E-06	58434	160511_QHF_FH_JSI12i_3	134.2	89.059			0.95716	0.89079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95716	0.89079	NaN	1	1	Median	80661000	40308000	40353000	0	0	0	0	0	0	48985000	22265000	26721000	31676000	18043000	13633000	32278	460	30552	199890;199891;199892	270433;270434;270435	270435			3	
LLQFVTGTSR	0	Unmodified	1120.6241	0.6240581	4199;1597	Q96PU5;P46934	NEDD4L;NEDD4	E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4	no	no	0	0	0	0		By MS/MS			16	0									1		1			58.043	49.559	2	0.022006	27321	160513_QHF_FH_JSI10Kac_6	58.433	0			0.35646	0.4229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35646	0.4229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7728000	5049800	2678100	0	0	0	7728000	5049800	2678100	0	0	0	0	0	0	32279	4199;1597	30553	199893	270436	270436			1	
LLQGPMDISEK	1	Unmodified	1229.6326	0.63257388	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				51.358	50.308	2	0.0027108	44083	160511_QHF_FH_JSI9i_2	71.349	33.046			1.5564	1.2814	NaN	1	1	Median	1.5564	1.2814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25870000	12828000	13042000	25870000	12828000	13042000	0	0	0	0	0	0	0	0	0	32280	4792	30554	199894	270437	270437			1	
LLQHFQDGGER	0	Unmodified	1298.6367	0.63674805	2878	Q5BKU9	OXLD1	Oxidoreductase-like domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		19.272	19.272	2	0.0020222	16107	160511_QHF_FH_JSI11i_3	73.985	55.673			0.83199	0.77648	40.492	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83199	0.77648	40.492	2	2	Median	NaN	NaN	NaN	0	0	Median	39802000	19480000	20322000	0	0	0	0	0	0	39802000	19480000	20322000	0	0	0	32281	2878	30555	199895;199896;199897	270438;270439;270440	270438			3	
LLQHGINADDK	1	Unmodified	1222.6306	0.63060004	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.22		9	5						3	3	4	8	2	17.783	16.237	2;3	1.4557E-23	12969	160511_QHF_FH_JSI12i_3	180.07	151.11			0.96747	1.0183	43.226	15	8	Median	1.6434	1.418	47.756	3	2	Plateau	0.93588	1.1563	66.467	3	3	Median	0.89607	0.93973	42.635	7	3	Median	1.022	1.0217	9.0069	2	0	Median	3185900000	1545800000	1640100000	301930000	151720000	150210000	363970000	188340000	175630000	1149800000	574900000	574870000	1370300000	630840000	739430000	32282	4193	30556	199898;199899;199900;199901;199902;199903;199904;199905;199906;199907;199908;199909;199910;199911;199912;199913;199914	270441;270442;270443;270444;270445;270446;270447;270448;270449;270450;270451;270452;270453;270454;270455;270456;270457;270458;270459;270460;270461	270459			21	
LLQIAGISPHGNALGASMQQQVNQQIPQEK	1	Unmodified	3197.6615	0.6615296	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		79.079	77.923	3;4	8.8739E-14	64120	160511_QHF_FH_JSI9i_3	84.515	82.377			0.84257	0.82934	21.801	6	3	Median	1.2839	1.0436	18.293	3	2	Median	0.69912	0.80063	6.9021	2	0	Median	0.67006	0.63965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166510000	103830000	62684000	57811000	28809000	29001000	66692000	40356000	26336000	42010000	34664000	7346900	0	0	0	32283	598	30557	199915;199916;199917;199918;199919;199920	270462;270463;270464;270465;270466;270467;270468;270469;270470;270471;270472;270473	270470			12	
LLQIIER	0	Unmodified	883.5491	0.54910224	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	46.36	46.279	2	0.0060875	40869	160511_QHF_FH_JSI11i_3	120.65	29.659			3.1689	0.80519	156.87	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85082	0.80519	191.74	2	2	Median	3.1689	3.1574	NaN	1	1	Median	732430000	359600000	372830000	0	0	0	0	0	0	517980000	264550000	253430000	214450000	95056000	119400000	32284	2094	30558	199921;199922;199923	270474;270475;270476	270475			3	
LLQIIERYPEETLSLMTK	1	Oxidation (M)	2192.1763	0.17625639	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	81.867	81.763	3	0.011506	73054	160511_QHF_FH_JSI11i_3	47.752	24.877			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50722000	50722000	0	0	0	0	0	0	0	28296000	28296000	0	22426000	22426000	0	32285	2094	30559	199924;199925	270477;270478	270477		1768	2	
LLQIIERYPEETLSLMTK	1	Unmodified	2176.1813	0.18134177	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							4	4	3	3	97.882	97.729	3	1.1742E-11	81151	160511_QHF_FH_JSI10i_3	138.08	121.78			5.6619	5.6835	266.17	14	14	Median	1.3591	1.1372	217.98	4	4	Median	1.3865	1.6869	301.35	4	4	Median	6.91	6.8913	383.17	3	3	Median	4.6393	4.9827	319.28	3	3	Median	1492500000	716400000	776150000	242920000	112640000	130270000	454040000	255780000	198260000	447250000	154570000	292680000	348340000	193400000	154940000	32286	2094	30559	199926;199927;199928;199929;199930;199931;199932;199933;199934;199935;199936;199937;199938;199939	270479;270480;270481;270482;270483;270484;270485;270486;270487;270488;270489;270490;270491;270492;270493;270494;270495;270496;270497;270498;270499	270484			21	
LLQISLWGNK	1	Unmodified	1170.6761	0.67609367	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	1	2	80.651	77.155	2	6.4705E-06	69020	160511_QHF_FH_JSI12i_3	131.41	85.69			0.95843	0.97711	22.678	6	1	Median	1.4947	1.2542	36.003	2	0	Median	0.90009	1.0467	NaN	1	0	Median	0.94482	0.87792	NaN	1	0	Median	0.88913	0.93327	7.1864	2	1	Median	420680000	199480000	221200000	99223000	39003000	60220000	64824000	34790000	30034000	68216000	35613000	32603000	188410000	90070000	98343000	32287	4800	30560	199940;199941;199942;199943;199944;199945	270500;270501;270502;270503;270504;270505;270506	270505			6	
LLQISSFNGK	1	Unmodified	1105.6132	0.61315906	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	3	2	3	2	54.572	52.69	2	2.4897E-07	46499	160511_QHF_FH_JSI11i_3	114.64	74.436			1.1659	1.1207	8.3126	9	2	Median	1.2286	1.0325	11.593	2	1	Median	0.89082	1.0592	2.2106	2	0	Median	1.2498	1.2056	1.05	3	1	Median	1.065	1.1034	8.5516	2	0	Median	561450000	255970000	305480000	69064000	30835000	38229000	97159000	51560000	45600000	192140000	82457000	109680000	203090000	91120000	111970000	32288	3921	30561	199946;199947;199948;199949;199950;199951;199952;199953;199954;199955	270507;270508;270509;270510;270511;270512;270513;270514;270515;270516;270517;270518	270507			11	
LLQKNNK	2	Acetyl (K)	898.52362	0.52361577	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		16.388	7.615	2	0.016558	6958	160513_QHF_FH_JSI11Kac_4	81.381	24.204			0.55018	0.58846	97.938	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0028	1.1762	NaN	1	0	Median	0.30187	0.29441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45243000	29066000	16177000	0	0	0	9867100	4115000	5752200	35376000	24951000	10425000	0	0	0	32289	1867	30562	199956;199957	270519;270520	270520	1886		2	
LLQKVFNDTCR	1	Acetyl (K)	1434.7289	0.72893388	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		62.453	51.69	2	0.0010136	26126	160513_QHF_FH_JSI10Kac_5	86.624	59.003			1.0896	1.178	412.07	2	2	Median	NaN	NaN	NaN	0	0	Median	18.465	21.706	NaN	1	1	Median	0.0643	0.063934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21750000	17021000	4729200	0	0	0	4396500	99347	4297200	17354000	16922000	431980	0	0	0	32290	1544	30563	199958;199959;199960	270521;270522;270523	270523	1557		3	
LLQLGQQPR	0	Unmodified	1051.6138	0.61382777	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	35.593	34.83	2	0.00014979	30654	160511_QHF_FH_JSI10i_2	89.369	71.144			1.1939	1.1095	54.887	7	2	Median	1.3644	1.1526	NaN	1	0	Median	1.1948	1.4042	37.973	2	1	Median	1.1199	1.0737	4.6377	2	0	Median	1.3796	1.4568	124.01	2	1	Median	450290000	197560000	252730000	52882000	26367000	26515000	103190000	48053000	55134000	137080000	61569000	75512000	157140000	61571000	95573000	32291	5608	30564	199961;199962;199963;199964;199965;199966;199967	270524;270525;270526;270527;270528;270529;270530	270529			6	
LLQLLGR	0	Unmodified	811.52797	0.52797287	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	55.041	54.607	2	0.013186	46835	160511_QHF_FH_JSI12i_3	71.258	15.092			0.51843	0.47323	105.99	5	5	Median	2.6692	2.2585	NaN	1	1	Median	0.17581	0.21756	NaN	1	1	Median	1.0684	0.98666	103.91	2	2	Median	0.35366	0.3605	NaN	1	1	Median	403140000	253550000	149590000	54308000	29165000	25143000	70118000	50499000	19619000	169330000	94310000	75021000	109380000	79575000	29804000	32292	2113	30565	199968;199969;199970;199971;199972	270531;270532;270533;270534;270535	270535			5	
LLQLPSTTIENISVSVHQPQPK	1	Unmodified	2428.3326	0.33257411	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	83.514	83.419	3	3.5343E-11	74503	160511_QHF_FH_JSI11i_3	93.776	90.507			0.94352	0.90485	29.111	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2171	1.1117	NaN	1	0	Median	0.73141	0.73651	NaN	1	1	Median	265760000	132850000	132910000	0	0	0	0	0	0	91612000	34823000	56789000	174150000	98031000	76117000	32293	2950	30566	199973;199974	270536;270537	270536			2	
LLQLVEDR	0	Unmodified	984.5604	0.56039521	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.54		8	3					1		3	3	4	2	46.822	45.006	2	0.001069	38932	160511_QHF_FH_JSI11i_2	113.41	61.112			0.29586	0.26084	177.57	12	12	Median	0.2716	0.22417	195.79	3	3	Median	0.19151	0.21829	189.54	3	3	Median	1.1997	1.1597	178.48	4	4	Median	1.13	1.2636	292.09	2	2	Median	5000700000	2795900000	2204800000	918000000	505730000	412270000	1215200000	744720000	470530000	1848000000	999360000	848660000	1019400000	546120000	473330000	32294	1128	30567	199975;199976;199977;199978;199979;199980;199981;199982;199983;199984;199985;199986	270538;270539;270540;270541;270542;270543;270544;270545;270546;270547;270548;270549;270550	270547			13	
LLQLWEK	1	Unmodified	928.5382	0.53820321	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			60.972	59.851	2	0.023109	50048	160511_QHF_FH_JSI10i_3	58.917	40.187			1.5868	1.9448	70.681	3	3	Median	0.73133	0.6103	NaN	1	1	Median	1.7306	2.0666	8.5915	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182020000	78833000	103190000	62942000	29860000	33082000	119080000	48973000	70105000	0	0	0	0	0	0	32295	3432	30568	199987;199988;199989	270551;270552;270553	270551			3	
LLQMQPAQHGEIIK	1	Unmodified	1604.8708	0.87084709	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							3	3	6	2	45.159	44.548	2;3	4.1364E-13	39171	160511_QHF_FH_JSI11i_3	125.74	94.319			0.85747	0.93664	31.042	8	3	Median	1.0352	0.90688	28.652	2	1	Median	0.7303	0.86941	22.386	2	1	Median	0.84295	0.86135	40.768	3	1	Median	1.2513	1.295	NaN	1	0	Median	845010000	497890000	347130000	142620000	87715000	54909000	162370000	117700000	44669000	379820000	211590000	168230000	160200000	80878000	79320000	32296	107	30569	199990;199991;199992;199993;199994;199995;199996;199997;199998;199999;200000;200001;200002;200003	270554;270555;270556;270557;270558;270559;270560;270561;270562;270563;270564;270565;270566;270567;270568;270569;270570	270556			16	
LLQNIGIDK	1	Unmodified	1012.5917	0.59169534	2410	Q13433	SLC39A6	Zinc transporter ZIP6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.51	44.016	2	0.0096681	37817	160511_QHF_FH_JSI11i_2	60.019	29.515			1.5051	1.5655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5051	1.5655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36422000	19574000	16848000	0	0	0	0	0	0	36422000	19574000	16848000	0	0	0	32297	2410	30570	200004	270571	270571			1	
LLQPFLLR	0	Unmodified	998.62769	0.62768692	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	76.545	75.771	2	0.0025225	62443	160511_QHF_FH_JSI9i_3	79.454	79.454			0.92992	0.83967	13.633	4	0	Median	1.1311	0.90623	NaN	1	0	Median	0.68253	0.77799	NaN	1	0	Median	0.83881	0.77545	NaN	1	0	Median	1.0309	1.0298	NaN	1	0	Median	93641000	46057000	47584000	24519000	8775600	15744000	13913000	7653200	6259900	28637000	14805000	13831000	26572000	14823000	11749000	32298	3359	30571	200005;200006;200007;200008	270572;270573	270572			2	
LLQPLVPR	0	Unmodified	934.59639	0.59638679	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	50.216	49.523	2	0.0020023	42269	160511_QHF_FH_JSI12i_3	83.377	52.087			0.95281	0.92696	19.98	6	0	Median	1.1151	0.9647	NaN	1	0	Median	0.71958	0.88342	NaN	1	0	Median	0.95281	0.92696	4.3996	2	0	Median	0.83566	0.87839	43.612	2	0	Median	204880000	103100000	101780000	19525000	7538400	11986000	31403000	18201000	13203000	72561000	36768000	35792000	81391000	40589000	40802000	32299	3566	30572	200009;200010;200011;200012;200013;200014	270574;270575;270576;270577;270578;270579	270579			6	
LLQPPAPIMPLDTNWPLLTVSK	1	Unmodified	2443.3549	0.35488946	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	2	3	2	102.35	102.25	2;3	2.2209E-18	90048	160511_QHF_FH_JSI11i_2	138.28	126.32			0.83911	0.97552	31.751	9	2	Median	1.3844	1.2201	17.888	2	0	Median	0.81799	0.97342	6.0865	2	0	Median	0.96865	0.97552	57.984	3	2	Median	0.80262	0.90879	3.0108	2	0	Median	1356800000	727560000	629290000	305880000	143810000	162070000	305280000	168840000	136430000	351970000	191320000	160650000	393710000	223580000	170130000	32300	1805	30573	200015;200016;200017;200018;200019;200020;200021;200022;200023	270580;270581;270582;270583;270584;270585;270586;270587;270588	270586			9	
LLQQEEEIK	1	Unmodified	1128.6027	0.60265396	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	2	2	2	29.801	26.785	2	3.4517E-11	23532	160511_QHF_FH_JSI11i_1	156.92	90.235			0.88303	0.93836	12.566	7	1	Median	1.0153	0.82583	NaN	1	0	Median	0.72252	0.88137	12.625	2	1	Median	0.84972	0.83748	24.209	2	0	Median	0.89303	0.94792	1.4332	2	0	Median	2669700000	1432900000	1236800000	655730000	323550000	332180000	720830000	382050000	338780000	642650000	321380000	321260000	650460000	405900000	244550000	32301	1818	30574	200024;200025;200026;200027;200028;200029;200030	270589;270590;270591;270592;270593;270594;270595;270596;270597;270598	270589			10	
LLQQGTAPAQAK	1	Unmodified	1224.6826	0.68263561	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5	5.66	2					1					2		1	17.628	17.375	2	9.9711E-05	14716	160511_QHF_FH_JSI10i_1	103.88	65.792			0.8222	0.97856	49.748	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8222	0.97856	49.748	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117060000	66402000	50658000	0	0	0	117060000	66402000	50658000	0	0	0	0	0	0	32302	3386	30575	200031;200032;200033	270599;270600;270601;270602	270599			4	
LLQQLAMTGSEEGDPR	0	Unmodified	1743.8461	0.84614848	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.617	51.121	2	2.0045E-05	46348	160511_QHF_FH_JSI11i_1	114.82	98.927			0.64482	0.71848	35.428	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.61658	0.71848	NaN	1	1	Median	0.85937	0.7971	NaN	1	1	Median	1.3459	1.3886	NaN	1	1	Median	187390000	91407000	95987000	0	0	0	72140000	35370000	36770000	68483000	35297000	33186000	46771000	20740000	26031000	32303	2591	30576	200034;200035;200036;200037	270603;270604;270605;270606;270607	270604			5	
LLQQLFLK	1	Unmodified	1001.6274	0.62735256	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	3	4	2	68.647	67.862	2	0.0011757	58669	160511_QHF_FH_JSI12i_2	110.61	71.069			0.75989	0.71328	94.206	11	11	Median	1.6497	1.414	111.79	2	2	Median	0.46097	0.52851	90.732	3	3	Median	1.4242	1.3983	114.13	4	4	Median	1.0076	1.1184	114.74	2	2	Median	1607400000	769120000	838280000	223120000	88689000	134430000	366900000	210870000	156030000	675270000	290920000	384350000	342120000	178640000	163470000	32304	5205	30577	200038;200039;200040;200041;200042;200043;200044;200045;200046;200047;200048	270608;270609;270610;270611;270612;270613;270614;270615;270616;270617;270618	270611			11	
LLQQMLKPGSDPDEGDEALK	2	Unmodified	2183.078	0.07799891	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.295	55.295	3	0.0088764	49035	160511_QHF_FH_JSI11i_3	38.915	29.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16518000	0	16518000	0	0	0	0	0	0	16518000	0	16518000	0	0	0	32305	2546	30578	200049	270619	270619			1	
LLQQQNDITGLSR	0	Unmodified	1484.7947	0.79470526	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	1		2	44.485	43.567	2	7.1103E-05	39767	160511_QHF_FH_JSI12i_1	120.96	37.695			0.91142	0.87884	36.821	4	2	Linear	1.1565	0.9537	NaN	1	0	Median	1.2645	1.4708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0986	1.1557	55.884	2	1	Median	186450000	78067000	108390000	43823000	20961000	22862000	69272000	28788000	40484000	0	0	0	73358000	28317000	45041000	32306	5461	30579	200050;200051;200052;200053	270620;270621;270622;270623;270624;270625	270622			6	
LLQQQNLPQTGEQELESLVLK	1	Unmodified	2407.2959	0.29585425	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.82	100.71	3	1.3403E-22	91414	160511_QHF_FH_JSI11i_1	154.19	142.56			1.0666	1.1331	28.036	4	2	Median	1.7336	1.4137	NaN	1	0	Median	1.0557	1.2271	NaN	1	0	Median	1.0776	1.0463	NaN	1	1	Median	0.71983	0.73694	NaN	1	1	Median	258040000	117820000	140220000	34664000	12928000	21737000	69444000	32113000	37331000	88628000	37782000	50846000	65303000	34995000	30308000	32307	280	30580	200054;200055;200056;200057	270626;270627;270628;270629	270626			4	
LLQQSGAQQFR	0	Unmodified	1274.6731	0.67313356	4208	Q96QD9	FYTTD1	UAP56-interacting factor	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			27.458	26.536	2	0.0038874	23145	160511_QHF_FH_JSI10i_2	57.859	27.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32308	4208	30581	200058	270630	270630			1	
LLQQVGTVAQLWIYPVK	1	Unmodified	1955.1244	0.12441924	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		91.608	83.815	2;3	6.8751E-147	46541	160513_QHF_FH_JSI11Kac_6	275.85	237.07			0.92071	1.0044	32.792	5	1	Median	0.92071	0.78957	NaN	1	0	Median	1.0185	1.1758	17.862	2	0	Median	0.78194	0.74946	41.41	2	1	Median	NaN	NaN	NaN	0	0	Median	445880000	254330000	191550000	62384000	24934000	37450000	201320000	113070000	88247000	182180000	116320000	65858000	0	0	0	32309	2985	30582	200059;200060;200061;200062;200063	270631;270632;270633;270634;270635;270636;270637;270638	270632			8	
LLQQVSQIYQSIEFSR	0	Unmodified	1938.0211	0.021076378	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.01		5	8						5	3	3	6	6	88.993	86.423	2;3	5.5075E-63	43866	160513_QHF_FH_JSI10Kac_6	249.66	216.57			0.65931	0.69329	62.904	17	15	Median	1.3052	1.1189	113.49	2	2	Median	0.50695	0.59705	10.801	3	2	Median	1.0777	1.0158	78.182	6	6	Median	1.0345	1.1083	52.258	6	5	Median	1160300000	542070000	618260000	203630000	49667000	153960000	271680000	175710000	95970000	374580000	159860000	214720000	310450000	156840000	153610000	32310	2502	30583	200064;200065;200066;200067;200068;200069;200070;200071;200072;200073;200074;200075;200076;200077;200078;200079;200080;200081	270639;270640;270641;270642;270643;270644;270645;270646;270647;270648;270649;270650;270651;270652;270653;270654;270655;270656;270657	270657			18	
LLQSAHPVR	0	Unmodified	1019.5876	0.58761301	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			12.252	11.508	3	0.00010666	9002	160511_QHF_FH_JSI10i_3	70.056	50.066			1.0115	0.98069	4.5562	2	0	Median	1.2418	1.0128	NaN	1	0	Median	0.82394	0.9496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135410000	74867000	60546000	60292000	30162000	30130000	75121000	44704000	30416000	0	0	0	0	0	0	32311	4653	30584	200082;200083	270658;270659	270658			2	
LLQSHNLYFGSNMR	0	Unmodified	1678.825	0.82495953	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	58.657	49.347	3	0.0003323	26841	160513_QHF_FH_JSI11Kac_6	69.594	51.23			1.0344	1.1533	13.978	4	2	Median	1.6799	1.4153	NaN	1	1	Median	0.95359	1.1523	NaN	1	0	Median	1.023	1.0087	NaN	1	0	Median	1.046	1.1544	NaN	1	1	Median	129180000	58302000	70882000	31793000	8065100	23728000	64303000	37047000	27256000	25120000	8727300	16392000	7968300	4462400	3505900	32312	4487	30585	200084;200085;200086;200087	270660;270661;270662	270660			3	
LLQSHNLYFGSNMR	0	Oxidation (M)	1694.8199	0.81987415	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			50.126	41.204	3	0.0001968	22727	160513_QHF_FH_JSI10Kac_6	76.82	66.481			1.151	1.1481	29.875	2	0	Median	1.1194	0.92947	NaN	1	0	Median	1.1836	1.4182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42342000	22428000	19914000	16554000	6936800	9616800	25788000	15491000	10297000	0	0	0	0	0	0	32313	4487	30585	200088;200089	270663;270664	270664		2482	2	
LLQSIGQAPESISEK	1	Unmodified	1598.8516	0.85155143	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	8	6								3	3	4	4	52.664	51.868	2;3	1.5759E-14	46706	160511_QHF_FH_JSI10i_1	181.98	117.27			0.86648	0.89489	16.453	14	4	Median	1.1178	0.91086	16.651	3	0	Median	0.73179	0.84611	17.542	3	0	Median	0.85132	0.70864	17.096	4	2	Linear	0.94897	0.99722	16.678	4	2	Median	1157300000	653270000	504010000	232350000	112410000	119940000	309140000	185280000	123860000	299020000	162650000	136370000	316770000	192930000	123840000	32314	2442	30586	200090;200091;200092;200093;200094;200095;200096;200097;200098;200099;200100;200101;200102;200103	270665;270666;270667;270668;270669;270670;270671;270672;270673;270674;270675;270676;270677;270678;270679;270680;270681;270682;270683;270684;270685	270676			21	
LLQSLLDTR	0	Unmodified	1057.6132	0.61315906	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.243	55.296	2	0.0012859	48459	160511_QHF_FH_JSI9i_2	69.716	18.818			0.8103	0.89363	11.777	4	0	Median	1.1298	0.97888	NaN	1	0	Median	0.70963	0.8625	NaN	1	0	Median	0.92526	0.92587	NaN	1	0	Median	0.66482	0.74555	NaN	1	0	Median	365330000	215410000	149920000	58345000	30015000	28330000	90290000	58591000	31700000	120850000	70092000	50755000	95848000	56717000	39131000	32315	2344	30587	200104;200105;200106;200107	270686;270687	270686			2	
LLQSNPVLEAFGNAK	1	Unmodified	1599.8621	0.86205654	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	2	8	6							3	3	6	4	80.919	80.268	2;3	4.873E-22	71665	160511_QHF_FH_JSI11i_3	181.66	169.09			1.1224	1.101	14.77	15	3	Plateau	1.2183	1.0395	16.89	3	1	Plateau	1.0236	1.2405	11.692	3	0	Plateau	1.2749	1.1626	13.067	5	2	Median	0.95743	1.0222	8.1497	4	0	Median	769050000	361530000	407510000	92624000	39980000	52643000	91702000	44573000	47129000	319920000	137740000	182180000	264800000	139240000	125560000	32316	100	30588	200108;200109;200110;200111;200112;200113;200114;200115;200116;200117;200118;200119;200120;200121;200122;200123	270688;270689;270690;270691;270692;270693;270694;270695;270696;270697;270698;270699;270700;270701;270702;270703;270704;270705;270706;270707;270708;270709	270689			20	
LLQSQLQVK	1	Unmodified	1055.6339	0.63389451	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	38.299	35.842	2	1.6761E-05	31147	160511_QHF_FH_JSI9i_2	108.46	49.48			0.96487	1.0088	14.322	6	0	Median	0.93911	0.82047	NaN	1	0	Median	0.7455	0.89906	NaN	1	0	Median	1.0254	1.0088	12.082	2	0	Median	1.0744	1.1407	5.2781	2	0	Median	339320000	169530000	169790000	57456000	28335000	29121000	55990000	33266000	22724000	112830000	49834000	62998000	113050000	58096000	54951000	32317	4119	30589	200124;200125;200126;200127;200128;200129	270710;270711;270712;270713;270714;270715	270712			6	
LLQSQTMGVSHSFTPK	1	Oxidation (M)	1775.8876	0.88761936	4612	Q9GZW8	MS4A7	Membrane-spanning 4-domains subfamily A member 7	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1								1	2	4	60.876	60.205	2	0.0075701	54754	160511_QHF_FH_JSI11i_1	51.092	34.15			1.0051	1.066	32.729	7	0	Median	NaN	NaN	NaN	0	0	Median	0.75669	0.94294	NaN	1	0	Median	0.73136	0.72891	9.2674	2	0	Median	1.29	1.401	17.905	4	0	Median	3866400000	1870700000	1995700000	0	0	0	388200000	207890000	180310000	577240000	299730000	277510000	2901000000	1363100000	1537900000	32318	4612	30590	200130;200131;200132;200133;200134;200135;200136	270716;270717;270718;270719;270720	270716		2501	5	
LLQTAATAAQQGGQANHPTAAVVTEK	1	Unmodified	2575.3354	0.33542766	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.96	2.63	1	11	10					1		4	6	7	6	42.334	41.222	3;4	6.8338E-75	36023	160511_QHF_FH_JSI9i_2	255.68	240.44			0.94075	0.96328	61.352	23	23	Median	0.78883	0.68234	75.95	4	4	Median	0.74254	0.8832	69.385	6	6	Median	1.6637	1.5671	60.327	7	7	Median	0.78434	0.79912	54.231	6	6	Median	2493000000	1309300000	1183700000	461870000	243330000	218540000	535320000	304280000	231030000	928960000	437250000	491700000	566820000	324410000	242410000	32319	1500	30591	200137;200138;200139;200140;200141;200142;200143;200144;200145;200146;200147;200148;200149;200150;200151;200152;200153;200154;200155;200156;200157;200158;200159	270721;270722;270723;270724;270725;270726;270727;270728;270729;270730;270731;270732;270733;270734;270735;270736;270737;270738;270739;270740;270741;270742;270743;270744;270745;270746;270747;270748;270749;270750;270751	270735			31	
LLQTCFSSPADDSMDR	0	Unmodified	1841.7924	0.79239835	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	56.028	55.42	2	5.0179E-11	49166	160511_QHF_FH_JSI9i_1	103.75	97.092			0.61517	0.61463	37.404	5	4	Median	0.61517	0.49868	NaN	1	1	Median	0.52203	0.61463	NaN	1	1	Median	0.7387	0.71869	30.709	2	2	Median	1.2163	1.2513	NaN	1	0	Median	192810000	110550000	82262000	18638000	11748000	6890400	46626000	31867000	14760000	79828000	45174000	34654000	47715000	21757000	25957000	32320	5159	30592	200160;200161;200162;200163;200164;200165	270752;270753;270754;270755;270756;270757;270758;270759	270759			8	
LLQTDDEEEAGLLELLK	1	Unmodified	1927.999	0.99900353	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.43	101.32	2;3	1.0798E-159	92058	160511_QHF_FH_JSI10i_1	306.05	261.75			1.0202	0.98594	10.994	8	0	Median	1.1261	0.91812	12.379	2	0	Median	0.72568	0.86772	2.6004	2	0	Median	1.1208	1.0891	5.0857	2	0	Median	0.96792	1.0153	6.4522	2	0	Median	3963600000	1963800000	1999800000	454320000	216550000	237770000	1282600000	700230000	582390000	967190000	476980000	490220000	1259400000	570040000	689390000	32321	1844	30593	200166;200167;200168;200169;200170;200171;200172;200173	270760;270761;270762;270763;270764;270765;270766;270767;270768;270769;270770;270771;270772;270773;270774;270775	270768			16	
LLQTGQER	0	Unmodified	943.50869	0.50869399	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	10.573	10.127	2	0.0069632	7688	160511_QHF_FH_JSI12i_2	60.972	14.206			1.2045	1.287	1.9411	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2378	1.2694	NaN	1	1	Median	1.1721	1.3048	NaN	1	0	Median	395510000	179890000	215620000	0	0	0	0	0	0	223600000	94179000	129420000	171920000	85713000	86202000	32322	4871	30594	200174;200175;200176	270776;270777;270778;270779	270777			4	
LLQTMDMIISK	1	Unmodified	1291.688	0.68798027	41	P0CG08;B7ZAQ6	GPR89B;GPR89A	Golgi pH regulator B;Golgi pH regulator A	yes	no	0	0	0	0				By MS/MS	2	0		1											1	31.67	30.355	4	0.04513	25506	160511_QHF_FH_JSI12i_2	14.876	1.1968			0.82934	0.90689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82934	0.90689	NaN	1	0	Median	244290000	113820000	130480000	0	0	0	0	0	0	0	0	0	244290000	113820000	130480000	32323	41	30595	200177	270780	270780			1	
LLQTMNLTQK	1	Unmodified	1188.6536	0.65364367	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.969	44.476	2	0.01109	38248	160511_QHF_FH_JSI11i_2	47.228	33.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32324	2793	30596	200178	270781	270781			1	
LLQTSNITK	1	Unmodified	1016.5866	0.58660996	2366	Q13177;O75914;Q13153	PAK2;PAK3;PAK1	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	1	2	26.324	25.649	2	0.00035439	21972	160511_QHF_FH_JSI9i_2	82.279	71.21			1.204	1.2894	79.267	7	3	Median	1.7084	1.5003	NaN	1	0	Median	0.79466	0.998	130.66	3	1	Median	1.273	1.2894	NaN	1	0	Median	0.96358	1.0399	37.706	2	2	Median	731000000	360240000	370760000	103460000	45121000	58334000	263530000	157410000	106120000	176910000	73413000	103500000	187100000	84295000	102810000	32325	2366	30597	200179;200180;200181;200182;200183;200184;200185	270782;270783;270784;270785;270786;270787;270788;270789	270786			8	
LLQTTNNSPMNSK	1	Unmodified	1446.7137	0.71367774	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.412	25.119	2	0.013131	22098	160511_QHF_FH_JSI10i_1	45.307	24.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32326	103	30598	200186	270790	270790			1	
LLQTTNNSPMNSKPQQIK	2	Unmodified	2041.0626	0.062623617	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							3	2	1		34.738	33.609	3	3.3437E-07	27429	160511_QHF_FH_JSI9i_3	113.29	86.813			1.2291	1.1548	67.666	5	5	Median	1.3486	1.0752	59.803	2	2	Median	1.0911	1.2638	120.32	2	2	Median	1.2291	1.1548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	271570000	120070000	151500000	111540000	44076000	67460000	114090000	52736000	61354000	45948000	23258000	22689000	0	0	0	32327	103	30599	200187;200188;200189;200190;200191;200192	270791;270792;270793;270794;270795;270796;270797	270796			7	
LLQTVLVLLTTNTVVHDEALSK	1	Unmodified	2406.3734	0.37337629	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		95.469	87.086	3	8.5919E-26	51317	160513_QHF_FH_JSI10Kac_6	195.34	164.91			1.1447	1.1301	182.66	4	4	Median	4.1077	3.5847	NaN	1	1	Median	0.30787	0.35627	NaN	1	1	Median	2.0904	2.0215	264.68	2	2	Median	NaN	NaN	NaN	0	0	Median	296740000	148570000	148160000	35584000	9119500	26465000	55635000	49143000	6492500	205520000	90309000	115210000	0	0	0	32328	3262	30600	200193;200194;200195;200196	270798;270799;270800;270801	270801			4	
LLQVASPFLEPHLVR	0	Unmodified	1717.9879	0.98792576	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							3	3	4	3	82.951	82.402	2;3	4.5116E-40	71224	160511_QHF_FH_JSI12i_3	205.46	189.84			1.1411	1.1133	24.493	13	2	Median	1.1411	0.9834	48.741	3	0	Median	0.92591	1.0563	4.9026	3	0	Plateau	1.219	1.1654	7.3922	4	2	Median	1.3057	1.3255	14.567	3	0	Plateau	5154800000	2504700000	2650100000	513980000	213940000	300040000	775580000	434480000	341110000	1937200000	1000200000	936930000	1928100000	856060000	1072000000	32329	558	30601	200197;200198;200199;200200;200201;200202;200203;200204;200205;200206;200207;200208;200209	270802;270803;270804;270805;270806;270807;270808;270809;270810;270811;270812;270813;270814;270815;270816;270817;270818;270819;270820;270821;270822;270823;270824	270824			23	
LLQVVEEPQALAAFLRDEQAQMK	1	Unmodified	2626.3789	0.37887238	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		101.32	101.3	3	3.9753E-59	89746	160511_QHF_FH_JSI10i_2	216.82	182.6			0.88224	0.96331	15.788	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88174	1.0771	NaN	1	0	Median	0.88274	0.86155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	803960000	423030000	380930000	0	0	0	267590000	133970000	133610000	536370000	289050000	247320000	0	0	0	32330	4350	30602	200210;200211	270825;270826	270826			2	
LLQYLYK	1	Unmodified	939.54295	0.54295423	1632	P48723	HSPA13	Heat shock 70 kDa protein 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.955	49.43	2	0.03714	42667	160511_QHF_FH_JSI11i_2	50.039	23.437			2.4682	2.4162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4682	2.4162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48860000	12918000	35943000	0	0	0	0	0	0	48860000	12918000	35943000	0	0	0	32331	1632	30603	200212	270827	270827			1	
LLQYLYSLK	1	Unmodified	1139.659	0.65904662	1653	P49356	FNTB	Protein farnesyltransferase subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.397	71.111	2	0.0069989	61319	160511_QHF_FH_JSI12i_2	62.582	40.732			14.791	16.399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.791	16.399	NaN	1	1	Median	15721000	1024700	14696000	0	0	0	0	0	0	0	0	0	15721000	1024700	14696000	32332	1653	30604	200213	270828	270828			1	
LLREEDNK	1	Unmodified	1015.5298	0.52982336	3464	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		6.8385	6.8385	2	0.026563	4547	160511_QHF_FH_JSI11i_3	103.56	41.564			1.2864	1.1992	123.68	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2864	1.1992	123.68	2	2	Median	NaN	NaN	NaN	0	0	Median	208060000	101020000	107040000	0	0	0	0	0	0	208060000	101020000	107040000	0	0	0	32333	3464	30605	200214;200215	270829;270830	270829			2	
LLREELQLLQEQGSYVGEVVR	0	Unmodified	2457.3227	0.32273771	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			92.724	92.029	3	4.6758E-10	76753	160511_QHF_FH_JSI10i_3	111.13	103.8			0.95875	1.1906	14.774	3	0	Median	1.3841	1.1909	NaN	1	0	Median	0.87844	1.0477	18.085	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135590000	72675000	62912000	48428000	24927000	23502000	87159000	47748000	39411000	0	0	0	0	0	0	32334	1984	30606	200216;200217;200218;200219	270831;270832;270833;270834;270835;270836;270837	270832			7	
LLRIDELQVVK	1	Unmodified	1324.8078	0.80783613	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	66.157	65.864	3	0.0028831	56945	160511_QHF_FH_JSI12i_3	51.567	34.789			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32335	641	30607	200220	270838	270838			1	
LLRLEGELTK	1	Unmodified	1170.6972	0.69722304	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			46.413	44.851	3	0.024585	37409	160511_QHF_FH_JSI10i_3	38.021	21.107			0.72381	0.83763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72381	0.83763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65674000	35824000	29850000	0	0	0	65674000	35824000	29850000	0	0	0	0	0	0	32336	2604	30608	200221	270839	270839			1	
LLRLLVK	1	Unmodified	853.61131	0.61130857	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			53.296	44.384	3	0.041686	23553	160513_QHF_FH_JSI9Kac_6	49.358	0			0.68798	0.69582	19.887	2	2	Median	0.70873	0.60454	NaN	1	1	Median	0.66784	0.80088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213930000	111890000	102040000	90580000	50266000	40314000	123350000	61621000	61727000	0	0	0	0	0	0	32337	4205	30609	200222;200223	270840;270841	270840			2	
LLSAACR	0	Unmodified	789.41671	0.41670786	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.67	5.12	1	1	3						1		1	3	2	14.25	12.436	2	0.0029699	10267	160511_QHF_FH_JSI10i_3	107.55	51.298			0.82101	0.84685	37.129	6	0	Median	NaN	NaN	NaN	0	0	Median	1.4303	1.6713	NaN	1	0	Median	0.80843	0.76961	11.506	3	0	Median	1.059	1.1161	30.002	2	0	Median	2120600000	1043900000	1076700000	0	0	0	298360000	101630000	196740000	827360000	427920000	399440000	994880000	514320000	480560000	32338	1650	30610	200224;200225;200226;200227;200228;200229	270842;270843;270844;270845;270846;270847	270844			6	
LLSAAYITSHLK	1	Unmodified	1315.75	0.7499869	2492	Q14119	VEZF1	Vascular endothelial zinc finger 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	65.927	64.933	3	3.5177E-06	53375	160511_QHF_FH_JSI9i_3	114.24	104.45			1.1439	0.93367	10.4	3	0	Plateau	1.0411	0.8573	NaN	1	0	Median	0.7763	0.93367	NaN	1	0	Median	1.1439	1.0544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	337860000	156520000	181340000	119300000	52626000	66676000	78533000	40124000	38408000	140030000	63765000	76260000	0	0	0	32339	2492	30611	200230;200231;200232;200233	270848;270849;270850;270851;270852;270853	270852			6	
LLSAEFLEQHYDR	0	Unmodified	1619.7944	0.79437091	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.954	62.954	3	3.5775E-05	55972	160511_QHF_FH_JSI11i_3	83.869	73.234			1.0084	0.94806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0084	0.94806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	161550000	80794000	80760000	0	0	0	0	0	0	161550000	80794000	80760000	0	0	0	32340	5561	30612	200234	270854;270855	270854			2	
LLSAGATK	1	Unmodified	759.44905	0.44905385	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.5	4.03	2	3	2				1			2	2	3	1	13.517	12.234	2	0.0071383	9764	160511_QHF_FH_JSI9i_3	60.436	20.333			0.98497	1.0308	45.129	8	0	Median	1.945	1.6271	94.417	2	0	Median	0.92835	1.1144	5.7211	2	0	Median	0.98642	0.99287	27.271	3	0	Median	0.9077	0.93435	NaN	1	0	Median	1221300000	544060000	677250000	248110000	80006000	168100000	424510000	217440000	207070000	498580000	219210000	279370000	50113000	27409000	22704000	32341	1008	30613	200235;200236;200237;200238;200239;200240;200241;200242	270856;270857;270858;270859;270860;270861;270862;270863	270859			8	
LLSAGATR	0	Unmodified	787.4552	0.45520186	1920	P60891;P21108	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.02		4	4					2		2	2	3	3	14.047	11.799	2	0.0043669	9736	160511_QHF_FH_JSI12i_3	68.915	27.413			1.0163	1.0504	11.585	10	0	Median	1.3863	1.1457	9.6674	2	0	Median	0.89678	1.0571	6.5022	2	0	Median	1.0523	1.0473	12.801	3	0	Median	0.86199	0.95507	11.608	3	0	Median	3372900000	1631100000	1741900000	499780000	225600000	274180000	950320000	446190000	504130000	854110000	392240000	461870000	1068700000	567030000	501710000	32342	1920	30614	200243;200244;200245;200246;200247;200248;200249;200250;200251;200252	270864;270865;270866;270867;270868;270869;270870;270871;270872;270873;270874	270874			11	
LLSALCPEEPPVHSSAQIVSK	1	Unmodified	2261.1726	0.172568	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									3	1	63.084	62.811	3	2.0044E-07	55662	160511_QHF_FH_JSI11i_3	85.231	65.682			1.1346	1.0931	52.76	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59733	0.56565	49.836	2	2	Median	1.137	1.1166	NaN	1	0	Median	107000000	63164000	43834000	0	0	0	0	0	0	61438000	43373000	18064000	45561000	19791000	25770000	32343	4946	30615	200253;200254;200255;200256	270875;270876;270877;270878;270879	270876			5	
LLSAMLVSEGDLTEQK	1	Unmodified	1732.8917	0.89170169	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	77.498	76.63	3	0.0011592	66220	160511_QHF_FH_JSI12i_2	51.265	46.717			0.69906	0.69378	68.15	3	2	Median	0.29703	0.25989	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69906	0.69378	NaN	1	1	Median	0.83988	0.96283	NaN	1	0	Median	84146000	45031000	39115000	18673000	15830000	2843800	0	0	0	29905000	13283000	16623000	35567000	15919000	19648000	32344	2789	30616	200257;200258;200259	270880;270881;270882;270883	270880			4	
LLSANQNIR	0	Unmodified	1027.5774	0.57744226	5308	Q9UHP6	RSPH14	Radial spoke head 14 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				18.048	17.192	2	0.0051199	14402	160511_QHF_FH_JSI9i_2	64.757	4.655			3.3872	2.9234	NaN	1	1	Median	3.3872	2.9234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49031000	16541000	32490000	49031000	16541000	32490000	0	0	0	0	0	0	0	0	0	32345	5308	30617	200260	270884	270884			1	
LLSASFLLTGGK	1	Unmodified	1205.702	0.70197407	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	83.596	82.86	2	0.00094016	71843	160511_QHF_FH_JSI12i_3	66.595	46.075			1.1279	1.0522	10.426	2	0	Median	1.1732	0.97745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0844	1.1327	NaN	1	0	Median	51452000	22739000	28713000	13396000	7356500	6039800	0	0	0	0	0	0	38056000	15383000	22673000	32346	1549	30618	200261;200262	270885;270886	270885			2	
LLSDFLDSEVSELR	0	Unmodified	1621.8199	0.81991695	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.223	93.826	2	6.4023E-15	80875	160511_QHF_FH_JSI12i_2	164.04	117.58			0.87456	1.0536	6.7553	4	0	Linear	1.3551	1.1453	NaN	1	0	Median	0.91892	1.1012	NaN	1	0	Median	0.98864	0.99713	NaN	1	0	Median	0.89766	1.0081	NaN	1	0	Median	310140000	169980000	140150000	52756000	21401000	31355000	91357000	58164000	33192000	71377000	33147000	38230000	94649000	57273000	37376000	32347	4337	30619	200263;200264;200265;200266	270887;270888;270889;270890;270891;270892;270893	270887			7	
LLSDKLK	2	Acetyl (K)	857.52222	0.52221879	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		48.223	37.832	2	0.054006	22398	160513_QHF_FH_JSI11Kac_4	58.917	17.265			0.62651	0.66879	95.428	2	0	Median	NaN	NaN	NaN	0	0	Median	1.122	1.3132	NaN	1	0	Median	0.34983	0.34059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13821000	9172900	4648300	0	0	0	3206600	1267500	1939100	10615000	7905400	2709100	0	0	0	32348	2069	30620	200267;200268	270894	270894			1	
LLSDLCGTVMSTTDVEK	1	Unmodified	1867.8907	0.89071541	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	73.131	72.556	3	0.00033595	66119	160511_QHF_FH_JSI12i_1	65.231	46.867			0.77797	0.80364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77797	0.80364	NaN	1	1	Median	41588000	25689000	15899000	0	0	0	0	0	0	0	0	0	41588000	25689000	15899000	32349	2846	30621	200269;200270	270895;270896	270895			2	
LLSDLLPMR	0	Unmodified	1056.6002	0.60015154	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	76.467	75.887	2	0.00073521	65923	160511_QHF_FH_JSI12i_3	75.109	75.109			0.87473	0.88981	13.513	5	0	Median	1.0591	0.9287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98242	0.95195	13.58	2	0	Median	0.75331	0.80135	14.808	2	0	Median	131910000	71187000	60724000	17354000	7458800	9895000	0	0	0	60454000	32474000	27980000	54103000	31255000	22849000	32350	5445	30622	200271;200272;200273;200274;200275	270897;270898;270899;270900	270900			4	
LLSDLSAFGGAAR	0	Unmodified	1276.6776	0.67755023	3390	Q86YV9	HPS6	Hermansky-Pudlak syndrome 6 protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	66.297	64.997	2	0.021682	55949	160511_QHF_FH_JSI12i_2	49.466	18.779			0.95162	1.0276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95162	1.0276	NaN	1	1	Median	22845000	12733000	10111000	0	0	0	0	0	0	0	0	0	22845000	12733000	10111000	32351	3390	30623	200276	270901	270901			1	
LLSDPNYGVHLPAVK	1	Unmodified	1621.8828	0.88279198	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	64.426	63.601	3	5.6844E-06	54749	160511_QHF_FH_JSI12i_2	123.38	103.64			0.88843	0.94984	17.721	4	2	Median	0.79375	0.6792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96655	0.9839	0.79188	2	2	Median	0.82854	0.9221	NaN	1	0	Median	494570000	257070000	237500000	87134000	45855000	41278000	0	0	0	301340000	144760000	156580000	106100000	66455000	39642000	32352	4423	30624	200277;200278;200279;200280	270902;270903;270904;270905;270906;270907	270903			6	
LLSEDPANYADAPTEGIRR	0	Unmodified	2087.0283	0.028346601	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		55.191	54.548	3	0.015346	48109	160511_QHF_FH_JSI10i_2	30.956	17.501			1.2574	1.6224	6.4227	3	2	Plateau	1.8861	1.6224	NaN	1	1	Median	1.2542	1.5324	NaN	1	0	Median	1.8574	1.742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134340000	55436000	78906000	44042000	16101000	27941000	44845000	23535000	21310000	45455000	15799000	29656000	0	0	0	32353	211	30625	200281;200282;200283	270908;270909;270910	270910			3	
LLSEEVFDFSSGQITQVK	1	Unmodified	2026.0259	0.025886985	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	6	9								2	5	4	4	92.404	92.002	2;3	2.4538E-32	83761	160511_QHF_FH_JSI11i_1	148.68	116.18			0.91969	0.90792	14.411	14	2	Median	1.0321	0.8733	2.1035	2	0	Median	0.78324	0.95322	19.061	5	2	Median	0.92244	0.91954	15.169	3	0	Median	0.84502	0.82019	6.404	4	0	Linear	976770000	506160000	470620000	121720000	57076000	64643000	388700000	201860000	186840000	234820000	118370000	116450000	231530000	128850000	102690000	32354	231	30626	200284;200285;200286;200287;200288;200289;200290;200291;200292;200293;200294;200295;200296;200297;200298	270911;270912;270913;270914;270915;270916;270917;270918;270919;270920;270921;270922;270923;270924;270925;270926;270927;270928;270929;270930;270931;270932;270933;270934;270935;270936	270911			26	
LLSEGADVNAKHR	1	Acetyl (K)	1450.7528	0.75284044	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		34.123	24.532	3	0.00077945	14499	160513_QHF_FH_JSI11Kac_5	64.121	47.868			0.75417	0.80611	102.36	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4236	1.6624	NaN	1	0	Median	0.39952	0.39088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14442000	8671100	5771200	0	0	0	2974000	867610	2106400	11468000	7803500	3664800	0	0	0	32355	4620	30627	200299;200300	270937;270938	270937	3201		2	
LLSESAQPLK	1	Unmodified	1084.6128	0.61282471	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								2	1	1	1	34.313	33.314	2	0.0021369	28315	160511_QHF_FH_JSI11i_2	61.679	23.546			0.87264	0.89201	62.45	5	2	Median	1.5945	1.3493	71.934	2	1	Median	0.81677	1.0064	NaN	1	0	Median	0.87264	0.89201	NaN	1	0	Median	0.34203	0.38912	NaN	1	1	Median	547700000	277460000	270250000	258930000	112440000	146480000	82175000	46740000	35434000	138770000	74621000	64147000	67835000	43654000	24181000	32356	4698	30628	200301;200302;200303;200304;200305	270939;270940;270941;270942	270942			4	
LLSFLEQSEHK	1	Unmodified	1329.6929	0.69286595	4218	Q96RL1	UIMC1	BRCA1-A complex subunit RAP80	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.755	52.519	3	0.00031975	44925	160511_QHF_FH_JSI12i_3	76.165	41.266			5.7431	5.7169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7431	5.7169	NaN	1	1	Median	42901000	7563100	35338000	0	0	0	0	0	0	0	0	0	42901000	7563100	35338000	32357	4218	30629	200306	270943	270943			1	
LLSFSPEEFPTLK	1	Unmodified	1506.797	0.79699667	2903	Q5JSZ5	PRRC2B	Protein PRRC2B	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	93.625	93.098	2	5.5223E-05	80343	160511_QHF_FH_JSI12i_2	109.42	83.76			0.84881	0.85449	5.1978	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7475	0.8824	NaN	1	0	Median	0.84893	0.85449	NaN	1	0	Median	0.75024	0.79708	NaN	1	0	Median	53147000	30964000	22183000	0	0	0	17208000	10846000	6362000	18646000	10002000	8643400	17293000	10116000	7177600	32358	2903	30630	200307;200308;200309	270944	270944			1	
LLSFTHK	1	Unmodified	844.48069	0.48068833	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	25.726	24.933	3	0.0034287	20476	160511_QHF_FH_JSI12i_3	66.073	57.3			1.3651	1.138	66.483	5	3	Median	1.3651	1.138	NaN	1	1	Median	1.0219	1.1987	123.31	2	1	Median	1.9592	1.8282	NaN	1	1	Median	0.89241	0.92182	NaN	1	0	Median	457570000	250490000	207080000	103910000	55061000	48848000	130700000	76745000	53953000	79094000	41639000	37455000	143870000	77048000	66822000	32359	15	30631	200310;200311;200312;200313;200314	270945;270946;270947;270948	270948			4	
LLSGGSVLDIIK	1	Unmodified	1213.7282	0.72818882	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	85.839	85.404	2	8.2122E-05	75955	160511_QHF_FH_JSI10i_2	93.096	48.014			1.0526	1.0286	19.07	7	2	Median	1.1851	1.0286	NaN	1	0	Median	0.94085	1.1437	NaN	1	0	Median	1.0437	0.99961	9.901	2	0	Median	1.0526	1.0231	28.775	3	2	Median	343100000	163970000	179130000	45454000	21769000	23685000	49106000	23478000	25628000	127150000	60587000	66558000	121390000	58133000	63260000	32360	721	30632	200315;200316;200317;200318;200319;200320;200321	270949;270950;270951;270952;270953;270954;270955;270956;270957	270955			9	
LLSGLQEKPDQK	2	Unmodified	1354.7456	0.7456298	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	2	2	27.091	26.63	2;3	4.167E-06	22736	160511_QHF_FH_JSI11i_3	108.47	69.165			0.60231	0.73648	68.018	5	4	Median	NaN	NaN	NaN	0	0	Median	0.76845	0.89721	27.918	2	1	Median	0.56029	0.52144	NaN	1	1	Median	0.92878	0.94308	122.98	2	2	Median	588080000	330400000	257680000	0	0	0	103740000	63314000	40429000	147810000	83079000	64730000	336530000	184010000	152520000	32361	3888	30633	200322;200323;200324;200325;200326;200327	270958;270959;270960;270961;270962;270963	270959			6	
LLSGPSQESPQTLGK	1	Unmodified	1540.8097	0.80968662	4497	Q9BWE0	REPIN1	Replication initiator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.517	39.88	2	9.1685E-05	35724	160511_QHF_FH_JSI10i_1	108.24	48.336			0.97821	1.0335	14.33	4	0	Median	1.5499	1.2965	NaN	1	0	Median	0.95448	1.1112	NaN	1	0	Median	1.0025	0.95955	NaN	1	0	Median	0.8957	0.96122	NaN	1	0	Median	173790000	87797000	85988000	33109000	14189000	18919000	50211000	26420000	23791000	46586000	22574000	24012000	43880000	24614000	19266000	32362	4497	30634	200328;200329;200330;200331	270964;270965;270966;270967;270968;270969	270968			6	
LLSGPSQESPQTLGKESR	1	Acetyl (K)	1954.996	0.99598384	4497	Q9BWE0	REPIN1	Replication initiator 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							3				1		2	55.532	44.932	2	0.0008529	25469	160513_QHF_FH_JSI12Kac_4	79.633	63.001			0.89477	1.0519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89477	1.0519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3162700	1058300	2104300	0	0	0	1854600	1058300	796310	0	0	0	1308000	0	1308000	32363	4497	30635	200332;200333;200334	270970;270971;270972	270971	3171		3	
LLSGPWVPGSGVSGQALAVAPDGK	1	Unmodified	2262.2008	0.20083166	3181	Q6ZNJ1	NBEAL2	Neurobeachin-like protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.07	94.736	3	0.061647	83056	160511_QHF_FH_JSI11i_2	10.258	2.0707			1.2251	1.2506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2251	1.2506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62134000	28665000	33469000	0	0	0	0	0	0	62134000	28665000	33469000	0	0	0	32364	3181	30636	200335	270973	270973			1	
LLSHGVPLPNWLINSYK	1	Unmodified	1950.0727	0.072718018	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	3	2	2	3	92.622	90.928	2;3	9.2283E-07	77801	160511_QHF_FH_JSI9i_3	113.69	112.06			0.9617	0.91596	33.556	10	5	Median	1.0709	0.87396	11.996	3	1	Median	0.52134	0.61572	65.195	2	1	Median	1.209	1.1272	18.139	2	1	Median	0.80792	0.87412	28.026	3	2	Median	843390000	455460000	387930000	181650000	90315000	91332000	213130000	144370000	68760000	230840000	97198000	133640000	217780000	123580000	94192000	32365	2303	30637	200336;200337;200338;200339;200340;200341;200342;200343;200344;200345	270974;270975;270976;270977;270978;270979;270980;270981;270982;270983;270984;270985;270986;270987;270988;270989;270990;270991;270992;270993;270994;270995;270996	270984			23	
LLSHSLLVTLASHLPSDFTPAVHASLDK	1	Unmodified	2968.6022	0.60220703	49	CON__P01966			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.04			6						13	6	5	5	3	94.862	89.082	3;4;5	3.6967E-255	44388	160513_QHF_FH_JSI12Kac_6	318.74	299.97		+	0.79738	0.92834	50.896	18	2	Median	0.65527	0.54573	15.975	6	1	Median	0.77448	0.92035	16.588	5	0	Median	1.1336	1.0634	65.235	4	1	Median	1.2586	1.3219	8.6315	3	0	Median	12438000000	6408600000	6029000000	2961100000	1855900000	1105300000	5188100000	2649500000	2538500000	1902300000	801820000	1100500000	2386000000	1101400000	1284700000	32366	49	30638	200346;200347;200348;200349;200350;200351;200352;200353;200354;200355;200356;200357;200358;200359;200360;200361;200362;200363;200364	270997;270998;270999;271000;271001;271002;271003;271004;271005;271006;271007;271008;271009;271010;271011;271012;271013;271014;271015;271016;271017;271018;271019;271020;271021;271022;271023;271024;271025;271026;271027;271028;271029;271030;271031;271032;271033;271034;271035;271036;271037	271027			41	
LLSILLSK	1	Unmodified	885.5899	0.58990443	2182	Q02040	AKAP17A	A-kinase anchor protein 17A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	71.758	70.952	2	0.0042139	58627	160511_QHF_FH_JSI9i_3	76.478	48.304			0.14442	0.13677	28.611	2	2	Median	0.13751	0.11172	NaN	1	1	Median	0.15168	0.16743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154970000	51203000	103760000	26693000	24015000	2677400	29394000	27188000	2206700	35408000	0	35408000	63473000	0	63473000	32367	2182	30639	200365;200366;200367;200368	271038;271039;271040;271041	271040			4	
LLSISGK	1	Unmodified	716.44324	0.44324019	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.47	4	7	6				2	4	5	6	5	9	8	32.38	28.294	2	0.0055305	16327	160513_QHF_FH_JSI11Kac_5	94.407	0			0.99847	1.0106	44.265	27	8	Median	0.99847	0.9123	14.799	5	0	Median	0.80322	0.96431	11.827	5	0	Median	1.1366	1.0934	56.87	9	4	Median	1.0213	1.0919	54.508	8	4	Median	77697000000	34199000000	43498000000	10855000000	4124700000	6729900000	12688000000	6138000000	6550300000	30483000000	13108000000	17375000000	23671000000	10829000000	12843000000	32368	857	30640	200369;200370;200371;200372;200373;200374;200375;200376;200377;200378;200379;200380;200381;200382;200383;200384;200385;200386;200387;200388;200389;200390;200391;200392;200393;200394;200395;200396	271042;271043;271044;271045;271046;271047;271048;271049;271050;271051;271052;271053;271054;271055;271056;271057;271058;271059;271060;271061;271062;271063;271064;271065;271066;271067;271068;271069;271070;271071;271072;271073;271074;271075;271076;271077;271078;271079;271080;271081	271068			40	
LLSISGKR	1	Unmodified	872.54435	0.54435122	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS				9.5	6.5			1						1	2				22.942	18.136	3	0.055565	14665	160511_QHF_FH_JSI9i_3	23.32	10.283			1.3325	1.1378	NaN	1	0	Median	1.3325	1.1378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18770000	12831000	5938300	18770000	12831000	5938300	0	0	0	0	0	0	0	0	0	32369	857	30641	200397;200398	271082;271083	271082			2	
LLSITVR	0	Unmodified	800.51199	0.51198846	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.78			1					1	4	2	1	2	1	53.851	45.853	2	0.0017722	25285	160513_QHF_FH_JSI10Kac_6	105.2	27.705			1.1034	1.1087	25.305	6	0	Median	1.2411	1.0667	26.128	2	0	Median	1.175	1.3956	NaN	1	0	Median	1.0033	0.95152	0.95983	2	0	Median	1.5487	1.6524	NaN	1	0	Median	790090000	391700000	398390000	164690000	75860000	88834000	206650000	93328000	113320000	320920000	167520000	153390000	97835000	54990000	42845000	32370	2094	30642	200399;200400;200401;200402;200403;200404	271084;271085;271086;271087;271088	271088			5	
LLSKYDPQK	2	Acetyl (K)	1132.6128	0.61282471	4268	Q99439	CNN2	Calponin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		45.087	34.866	2	0.0059508	20843	160513_QHF_FH_JSI11Kac_4	71.451	38.188			0.53568	0.58	63.478	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77469	0.90858	NaN	1	0	Median	0.37041	0.37025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24686000	17414000	7272100	0	0	0	5157500	2441100	2716400	19528000	14973000	4555700	0	0	0	32371	4268	30643	200405;200406	271089;271090	271090	3093		2	
LLSLGAQANFFHPEK	1	Unmodified	1670.878	0.87804096	5545;2507	Q9Y2X7;Q14161	GIT1;GIT2	ARF GTPase-activating protein GIT1;ARF GTPase-activating protein GIT2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.685	72.884	3	3.1245E-22	63120	160511_QHF_FH_JSI12i_3	171.15	158.87			0.89233	0.89633	17.79	4	1	Median	1.0513	0.86158	NaN	1	0	Median	0.80918	0.93247	NaN	1	0	Median	0.98403	0.93914	NaN	1	1	Median	0.64239	0.64338	NaN	1	0	Median	572200000	283170000	289030000	108280000	44628000	63656000	125600000	64805000	60792000	187430000	92156000	95272000	150900000	81582000	69314000	32372	5545;2507	30644	200407;200408;200409;200410	271091;271092;271093;271094;271095;271096;271097;271098	271096			8	
LLSLISIALPENK	1	Unmodified	1409.8494	0.84936659	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.49		7	10						10	8	6	8	5	95.939	91.639	2;3	3.594E-65	83456	160511_QHF_FH_JSI10i_3	206.49	165.04			0.62245	0.57747	71.58	20	17	Median	0.61883	0.51354	40.137	6	5	Median	0.67353	0.77971	35.242	4	2	Median	0.56265	0.53755	92.944	6	6	Median	0.40881	0.41491	93.579	4	4	Linear	1985900000	1091100000	894730000	432470000	231720000	200750000	401040000	237000000	164040000	683030000	375540000	307490000	469310000	246860000	222450000	32373	3290	30645	200411;200412;200413;200414;200415;200416;200417;200418;200419;200420;200421;200422;200423;200424;200425;200426;200427;200428;200429;200430;200431;200432;200433;200434;200435;200436;200437	271099;271100;271101;271102;271103;271104;271105;271106;271107;271108;271109;271110;271111;271112;271113;271114;271115;271116;271117;271118;271119;271120;271121;271122;271123;271124;271125;271126;271127;271128;271129	271105			31	
LLSLKYHPDK	2	Acetyl (K)	1254.6972	0.69722304	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		55.307	45.579	3	0.0027363	24773	160513_QHF_FH_JSI11Kac_6	55.261	41.452			0.2526	0.2447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2526	0.2447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21867000	17150000	4717200	0	0	0	0	0	0	21867000	17150000	4717200	0	0	0	32374	5285	30646	200438	271130	271130	3353		1	
LLSLLEK	1	Unmodified	814.51641	0.51640513	1433	P35270	SPR	Sepiapterin reductase	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	57.66	56.71	2	0.013827	49823	160511_QHF_FH_JSI9i_2	68.915	16.232			9.767	16.055	32.902	3	3	Plateau	9.767	8.4725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16.022	16.195	NaN	1	1	Median	9.4741	10.603	NaN	1	1	Median	360080000	49547000	310540000	78657000	13706000	64952000	0	0	0	172670000	18635000	154030000	108760000	17206000	91552000	32375	1433	30647	200439;200440;200441	271131;271132;271133	271132			3	
LLSLLPEYVVPYMIHLLAHDPDFTR	0	Unmodified	2951.5619	0.56192212	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		100.22	93.268	3;4	4.4927E-27	55477	160513_QHF_FH_JSI10Kac_6	135.72	123.52			0.98338	1.2141	14.595	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.99643	1.189	2.9494	2	0	Median	0.98338	0.92584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3206400000	1320800000	1885600000	0	0	0	2862800000	1223400000	1639400000	343560000	97370000	246190000	0	0	0	32376	2789	30648	200442;200443;200444	271134;271135;271136	271136			3	
LLSLLPEYVVPYTIHLLAHDPDYVK	1	Unmodified	2907.5786	0.57861804	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	9.5	6.5			2						2	1		1	2	100.48	95.84	4	1.9578E-13	48457	160513_QHF_FH_JSI12Kac_6	95.71	89.134			1.1257	1.0522	24.017	4	0	Median	1.3521	1.141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9372	0.87321	NaN	1	0	Median	1.1745	1.2127	31.526	2	0	Median	287720000	151380000	136350000	141090000	64690000	76397000	0	0	0	16476000	10975000	5500600	130160000	75713000	54447000	32377	4988	30649	200445;200446;200447;200448	271137;271138;271139	271139			3	
LLSLSGVFAVHK	1	Unmodified	1269.7445	0.74450759	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	77.352	72.779	3	4.1618E-06	39105	160513_QHF_FH_JSI10Kac_6	105.25	89.622			0.82587	0.83702	42.594	8	1	Median	1.0307	0.85806	3.7112	2	0	Median	0.55717	0.6425	37.605	2	1	Median	0.62927	0.58949	54.018	2	0	Median	1.0117	1.0572	63.478	2	0	Median	412510000	214490000	198030000	116750000	54989000	61760000	94468000	61161000	33307000	90471000	40299000	50172000	110830000	58039000	52787000	32378	3798	30650	200449;200450;200451;200452;200453;200454;200455;200456	271140;271141;271142;271143	271143			1	
LLSLSGVFAVHKPK	2	Unmodified	1494.8922	0.89223446	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			72.148	64.682	4	0.0002184	35524	160513_QHF_FH_JSI10Kac_6	92.781	80.155			0.29342	0.33739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29342	0.33739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15148000	10338000	4810000	0	0	0	15148000	10338000	4810000	0	0	0	0	0	0	32379	3798	30651	200457	271144	271144			1	
LLSLTPPLVLPALEEFFTSLVK	1	Unmodified	2426.4076	0.40763654	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.54	99.819	3	1.1486E-08	59144	160513_QHF_FH_JSI10Kac_6	138.04	130.35			0.72787	0.86982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72787	0.86982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73978000	48107000	25871000	0	0	0	73978000	48107000	25871000	0	0	0	0	0	0	32380	2993	30652	200458	271145	271145			1	
LLSMAYSAVGK	1	Unmodified	1138.6056	0.60563084	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			4						4	3	4	1		58.133	52.907	2	4.3592E-05	44209	160511_QHF_FH_JSI10i_3	103.7	60.454			1.106	1.178	92.509	8	8	Median	4.5879	3.8046	121.85	3	3	Plateau	1.6698	1.9469	88.563	4	4	Median	1.1079	1.0687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	166380000	69105000	97278000	42858000	18397000	24461000	101000000	42756000	58247000	22522000	7951700	14570000	0	0	0	32381	2997	30653	200459;200460;200461;200462;200463;200464;200465;200466	271146;271147;271148;271149;271150;271151;271152;271153	271146			8	
LLSNDEVTIK	1	Unmodified	1130.6183	0.61830402	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							2	4	3	2	41.937	41.072	2	3.6448E-05	36333	160511_QHF_FH_JSI9i_1	95.523	64.836			0.74792	0.76161	28.693	8	4	Median	0.80185	0.66308	NaN	1	0	Median	0.73964	0.85753	32.722	3	2	Plateau	0.8157	0.7973	17.054	2	1	Median	0.91677	0.99963	30.708	2	1	Median	4647000000	2441100000	2205900000	489020000	301510000	187510000	1607400000	872530000	734920000	1499900000	719260000	780690000	1050600000	547800000	502820000	32382	3876	30654	200467;200468;200469;200470;200471;200472;200473;200474;200475;200476;200477	271154;271155;271156;271157;271158;271159;271160;271161;271162;271163;271164;271165	271160			12	
LLSNEEEK	1	Unmodified	960.47639	0.47639081	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.082	18.601	2	0.047995	16145	160511_QHF_FH_JSI12i_1	46.426	7.6341			4.9723	5.3226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9723	5.3226	NaN	1	1	Median	1529300000	122000000	1407300000	0	0	0	0	0	0	0	0	0	1529300000	122000000	1407300000	32383	229	30655	200478	271166	271166			1	
LLSNTVMPR	0	Unmodified	1029.5641	0.56410038	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	39.277	38.475	2	2.756E-05	32727	160511_QHF_FH_JSI12i_3	116.73	87.577			1.0242	1.2442	24.882	5	0	Median	1.7097	1.4711	NaN	1	0	Median	1.0242	1.2442	NaN	1	0	Median	0.98239	0.99805	NaN	1	0	Median	0.98409	1.056	38.239	2	0	Median	1074700000	523820000	550870000	190940000	84655000	106280000	256680000	121710000	134970000	180710000	102040000	78672000	446350000	215410000	230940000	32384	1421	30656	200479;200480;200481;200482;200483	271167;271168;271169;271170;271171;271172	271172			6	
LLSPFMPFVTEELFQR	0	Oxidation (M)	1969.0019	0.0019208405	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	101.97	101.95	2;3	0.00015652	91095	160511_QHF_FH_JSI11i_3	84.365	69.465			1.177	1.1616	7.0805	5	2	Median	NaN	NaN	NaN	0	0	Median	0.98449	1.1481	NaN	1	0	Median	1.2704	1.1983	12.579	2	1	Median	1.1747	1.204	5.0702	2	1	Median	544220000	235980000	308230000	0	0	0	32989000	11760000	21228000	184090000	84647000	99439000	327140000	139580000	187570000	32385	1283	30657	200484;200485;200486;200487;200488;200489	271173;271174;271175;271176	271173		921	4	
LLSPFMPFVTEELFQR	0	Unmodified	1953.007	0.0070062184	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							3	3	4	4	102.69	102.62	2;3	3.4757E-31	88494	160511_QHF_FH_JSI12i_2	195.1	183.2			1.0183	1.0171	10.813	14	2	Median	1.2864	1.0954	14.133	3	1	Median	0.85032	0.87339	9.0069	3	0	Plateau	1.0183	0.9918	8.7524	4	1	Median	0.9151	0.97445	12.531	4	0	Median	5648500000	2775900000	2872500000	401260000	187120000	214140000	453920000	262090000	191830000	2272800000	1125900000	1146800000	2520500000	1200800000	1319700000	32386	1283	30657	200490;200491;200492;200493;200494;200495;200496;200497;200498;200499;200500;200501;200502;200503	271177;271178;271179;271180;271181;271182;271183;271184;271185;271186;271187;271188;271189;271190;271191	271180			15	
LLSPGAR	0	Unmodified	712.42317	0.42317345	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	13.856	13.418	2	0.049359	10551	160511_QHF_FH_JSI9i_3	43	15.683			1.0766	1.1413	21.118	4	0	Median	1.6521	1.3462	NaN	1	0	Median	1.1743	1.3204	NaN	1	0	Median	0.95655	0.88253	NaN	1	0	Median	0.98706	0.9864	NaN	1	0	Median	2421400000	1126700000	1294700000	282840000	111970000	170860000	416300000	190880000	225420000	760240000	348970000	411260000	962030000	474910000	487120000	32387	1199	30658	200504;200505;200506;200507	271192;271193	271192			2	
LLSPSHVVQFR	0	Unmodified	1281.7194	0.71935547	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				86.061	77.449	2	0.053732	42704	160513_QHF_FH_JSI9Kac_6	36.557	2.3041			0.88858	0.74999	NaN	1	0	Median	0.88858	0.74999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1098700000	581780000	516890000	1098700000	581780000	516890000	0	0	0	0	0	0	0	0	0	32388	2930	30659	200508	271194	271194			1	
LLSPSILK	1	Unmodified	869.5586	0.5586043	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	55.747	54.911	2	0.0046723	47063	160511_QHF_FH_JSI12i_3	67.981	23.289			1.2319	1.1929	8.6121	4	0	Median	1.2687	1.0415	NaN	1	0	Median	1.0996	1.2787	NaN	1	0	Median	1.2995	1.1849	NaN	1	0	Median	1.1962	1.201	NaN	1	0	Median	160330000	74939000	85391000	22365000	10971000	11393000	24638000	11225000	13412000	53055000	25458000	27597000	60272000	27284000	32989000	32389	708	30660	200509;200510;200511;200512	271195;271196;271197	271197			3	
LLSPTER	0	Unmodified	814.45487	0.45486751	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	17.638	17.03	2	0.045437	13992	160511_QHF_FH_JSI12i_2	44.692	19.242			0.9372	1.0292	10.875	5	0	Median	1.1989	1.0292	NaN	1	0	Median	0.9372	1.1407	NaN	1	0	Median	0.95299	0.95118	15.298	2	0	Median	0.87366	0.97035	NaN	1	0	Median	676970000	352690000	324280000	121280000	56900000	64376000	122710000	65545000	57168000	292920000	161150000	131770000	140060000	69092000	70963000	32390	5119	30661	200513;200514;200515;200516;200517	271198	271198			1	
LLSPVVPQISAPQSNK	1	Unmodified	1676.9461	0.94612052	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	3.52	7	6						1		3	3	5	3	69.718	69.005	2;3	5.1667E-05	61219	160511_QHF_FH_JSI10i_2	106.49	87.747			0.9762	1.0203	10.999	13	1	Median	1.1791	0.96853	10.448	3	0	Plateau	0.80527	0.9216	13.629	3	0	Plateau	1.0111	0.92877	10.081	4	1	Linear	0.87091	0.95567	9.0237	3	0	Plateau	847120000	450230000	396890000	121600000	53399000	68206000	183240000	103100000	80141000	348750000	194590000	154150000	193530000	99135000	94393000	32391	3503	30662	200518;200519;200520;200521;200522;200523;200524;200525;200526;200527;200528;200529;200530;200531	271199;271200;271201;271202;271203;271204;271205;271206;271207;271208;271209;271210;271211;271212;271213;271214;271215;271216;271217;271218;271219;271220;271221	271220			23	
LLSPYSPQTQETDSAVQK	1	Unmodified	1990.9848	0.98475045	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	48.167	47.486	2;3	6.5633E-23	42953	160511_QHF_FH_JSI11i_1	178.15	147.42			0.94446	0.94755	19.943	8	0	Median	1.4563	1.198	32.435	2	0	Median	0.87387	1.023	14.877	2	0	Median	0.90682	0.87035	15.708	2	0	Median	0.87378	0.90692	5.4684	2	0	Median	469890000	226260000	243630000	108210000	47245000	60964000	95307000	48604000	46703000	122000000	65703000	56294000	144380000	64711000	79668000	32392	5202	30663	200532;200533;200534;200535;200536;200537;200538;200539	271222;271223;271224;271225;271226;271227;271228;271229;271230;271231;271232;271233;271234;271235;271236;271237;271238	271225			16	
LLSQDFVQIMEDIILTLPK	1	Unmodified	2215.2174	0.21739292	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		2							6	2	3	1	2	104.99	98.853	2;3	1.6781E-86	58652	160513_QHF_FH_JSI10Kac_6	272.16	235			1.2677	1.2032	95.346	8	3	Median	2.0613	1.7865	90.297	2	1	Median	0.66148	0.79199	160.54	3	1	Median	0.9514	0.89459	NaN	1	1	Median	1.511	1.5856	4.632	2	0	Median	2083200000	974240000	1108900000	544040000	259890000	284150000	621300000	372980000	248320000	169580000	70639000	98941000	748240000	270720000	477510000	32393	1271	30664	200540;200541;200542;200543;200544;200545;200546;200547	271239;271240;271241;271242;271243;271244;271245;271246;271247;271248;271249;271250;271251;271252;271253	271252			15	
LLSQEPSNGISSDPTVFLDR	0	Unmodified	2174.0855	0.085527128	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	78.849	78.403	2	7.5221E-11	71111	160511_QHF_FH_JSI10i_1	161.63	130.44			1.1542	1.1768	19.694	5	3	Median	1.7973	1.4453	NaN	1	1	Median	1.1744	1.3016	NaN	1	0	Median	1.0115	0.97707	18.557	2	2	Median	1.1211	1.1768	NaN	1	0	Median	98312000	43162000	55150000	19971000	6854600	13116000	19279000	7734600	11544000	38520000	19745000	18776000	20542000	8828000	11714000	32394	5666	30665	200548;200549;200550;200551;200552	271254;271255;271256;271257;271258;271259	271258			6	
LLSQGMTEEEEDK	1	Unmodified	1507.6712	0.67120381	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	30.407	30.043	2	6.0412E-07	26996	160511_QHF_FH_JSI12i_1	133.07	115.21			0.89175	0.92031	33.089	4	2	Median	NaN	NaN	NaN	0	0	Median	0.90067	1.0342	43.674	2	2	Median	1.1672	1.1153	NaN	1	0	Median	0.68132	0.69505	NaN	1	0	Median	168910000	82649000	86265000	0	0	0	72396000	30618000	41778000	40035000	18996000	21039000	56483000	33035000	23448000	32395	4286	30666	200553;200554;200555;200556	271260;271261;271262;271263;271264;271265	271263			6	
LLSRPQDALEGVVLSPSLEAR	0	Unmodified	2249.2379	0.23794545	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		84.483	83.749	3	1.0935E-11	68801	160511_QHF_FH_JSI9i_3	113.26	104.77			0.88421	0.9125	21.406	5	1	Median	1.3158	1.0876	24.824	2	0	Median	0.71636	0.87122	22.198	2	0	Median	0.88421	0.82107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	323010000	172260000	150750000	136090000	66634000	69459000	118620000	67877000	50741000	68303000	37750000	30552000	0	0	0	32396	5035	30667	200557;200558;200559;200560;200561	271266;271267;271268;271269;271270;271271;271272;271273;271274	271271			9	
LLSRPQDVLEGVVLSPSLEAR	0	Unmodified	2277.2692	0.26924557	2957	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	no	no	0	0	0	1	By MS/MS				3	0			1							1				94.453	93.427	3	0.038768	76342	160511_QHF_FH_JSI9i_3	29.476	21.39			1.3696	1.1571	NaN	1	1	Median	1.3696	1.1571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10580000	4554600	6025800	10580000	4554600	6025800	0	0	0	0	0	0	0	0	0	32397	2957	30668	200562	271275	271275			1	
LLSSAFDEVYPALPSDVQTAIK	1	Unmodified	2363.226	0.22604336	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								3	4	3	3	100.95	100.84	2;3	9.4912E-84	91548	160511_QHF_FH_JSI10i_1	280.36	251.03			0.9585	0.91988	11.742	13	2	Median	1.1039	0.91282	7.9757	3	0	Median	0.71792	0.85748	7.9109	4	2	Linear	0.98507	0.93977	19.141	3	0	Median	0.9585	1.0271	10.126	3	0	Plateau	2208100000	1197700000	1010400000	336890000	174510000	162380000	725830000	430270000	295570000	537780000	275960000	261820000	607580000	316960000	290610000	32398	127	30669	200563;200564;200565;200566;200567;200568;200569;200570;200571;200572;200573;200574;200575	271276;271277;271278;271279;271280;271281;271282;271283;271284;271285;271286;271287;271288;271289;271290;271291;271292;271293;271294;271295;271296	271289			21	
LLSSDRNPPIDDLIK	1	Unmodified	1694.9203	0.9202997	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	2	3	4	65.41	64.782	2;3	1.4879E-05	57475	160511_QHF_FH_JSI11i_3	128.67	66.372			1.0936	1.1	22.709	11	4	Median	1.297	1.1201	1.9338	2	1	Median	0.97994	1.1623	7.7892	2	0	Median	1.0058	1.0304	8.3138	3	1	Plateau	1.0473	1.0776	39.06	4	2	Median	2164400000	1121400000	1043100000	209010000	104960000	104050000	416960000	229700000	187260000	933230000	467440000	465790000	605230000	319270000	285950000	32399	147;158	30670	200576;200577;200578;200579;200580;200581;200582;200583;200584;200585;200586	271297;271298;271299;271300;271301;271302;271303;271304;271305;271306;271307;271308;271309;271310;271311;271312;271313;271314;271315;271316	271298			20	
LLSSLGGFK	1	Unmodified	920.53312	0.53311783	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							3	3	3	3	53.778	52.994	2	6.8665E-05	43375	160511_QHF_FH_JSI9i_3	96.492	35.732			0.82752	0.8907	70.165	12	9	Median	1.214	0.99872	60.101	3	2	Median	0.98091	1.1159	74.499	3	2	Median	0.52733	0.52125	87.368	3	3	Median	0.69812	0.79437	95.523	3	2	Median	2470200000	1318100000	1152100000	382640000	167930000	214710000	485330000	271880000	213450000	734770000	364540000	370240000	867470000	513780000	353680000	32400	3860	30671	200587;200588;200589;200590;200591;200592;200593;200594;200595;200596;200597;200598	271317;271318;271319;271320;271321;271322;271323;271324;271325;271326;271327;271328;271329;271330;271331	271323			15	
LLSSLTGSWSLVHNGVSYYINLCQK	1	Unmodified	2838.4374	0.43744989	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	91.925	83.747	3	1.1319E-196	48668	160513_QHF_FH_JSI10Kac_6	288.95	264.4			0.64484	0.71228	37.667	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.60867	0.71228	NaN	1	0	Median	0.9152	0.89573	NaN	1	0	Median	1.3674	1.4871	NaN	1	1	Median	323650000	155680000	167970000	0	0	0	173990000	96191000	77801000	89195000	35475000	53719000	60462000	24014000	36448000	32401	1005	30672	200599;200600;200601	271332;271333;271334;271335	271334			4	
LLSSYLQK	1	Unmodified	950.54368	0.54368251	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								2	1	1	42.313	41.228	2	0.0076348	35583	160511_QHF_FH_JSI11i_2	58.917	25.367			0.91247	0.98547	15.667	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89603	1.0772	24.869	2	0	Median	0.91208	0.94304	NaN	1	0	Median	0.91286	1.0298	NaN	1	0	Median	2179200000	1076900000	1102300000	0	0	0	704720000	349230000	355490000	652700000	346790000	305910000	821750000	380850000	440890000	32402	1241	30673	200602;200603;200604;200605	271336;271337;271338;271339	271338			4	
LLSTDPVAAK	1	Unmodified	1013.5757	0.57571092	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.478	34.085	2	0.0002652	30412	160511_QHF_FH_JSI11i_1	79.893	36.085			1.0308	1.0032	78.047	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85709	1.0139	NaN	1	0	Median	1.0308	1.0032	NaN	1	0	Median	3.6897	3.8973	NaN	1	0	Median	638340000	314360000	323970000	0	0	0	230560000	138060000	92493000	265080000	149160000	115920000	142700000	27144000	115560000	32403	2296	30674	200606;200607;200608	271340;271341;271342;271343	271340			4	
LLSTDPVTAK	1	Unmodified	1043.5863	0.58627561	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.79	3	1				1	1			1	1	2	2	37.849	34.177	2	0.0021769	31135	160511_QHF_FH_JSI12i_1	74.376	28.658			1.3187	1.4259	39.779	6	4	Median	3.205	2.679	NaN	1	1	Median	1.147	1.3944	NaN	1	1	Median	1.1482	1.1197	37.345	2	1	Median	1.1952	1.2841	34.045	2	1	Median	1435900000	684970000	750950000	337110000	138050000	199060000	36827000	19366000	17461000	611650000	284700000	326960000	450330000	242860000	207470000	32404	2046	30675	200609;200610;200611;200612;200613;200614	271344;271345;271346;271347;271348;271349	271345			6	
LLSTEWGLPSIVK	1	Unmodified	1441.8181	0.81806646	5571	Q9Y3B1	SLMO2	Protein slowmo homolog 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	93.583	92.825	2	0.0003712	80057	160511_QHF_FH_JSI12i_2	96.015	60.056			0.68968	0.73914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68968	0.73914	NaN	1	1	Median	7809400	4458700	3350800	0	0	0	0	0	0	0	0	0	7809400	4458700	3350800	32405	5571	30676	200615;200616;200617	271350;271351;271352	271350			3	
LLSTFPR	0	Unmodified	832.48069	0.48068833	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.278	39.18	2	0.012437	33388	160511_QHF_FH_JSI12i_3	69.383	28.463			0.96443	0.94399	5.9609	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96446	0.90503	NaN	1	0	Median	0.96439	0.98463	NaN	1	0	Median	410960000	206220000	204750000	0	0	0	0	0	0	161040000	79173000	81872000	249920000	127040000	122870000	32406	5442	30677	200618;200619	271353;271354;271355;271356	271356			4	
LLSTGPTEPWSIR	0	Unmodified	1455.7722	0.7721789	4631	Q9H0E9	BRD8	Bromodomain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.717	66.819	2	0.00032835	59298	160511_QHF_FH_JSI10i_2	72.006	47.13			0.97058	0.97635	7.3469	4	0	Median	1.1581	0.99141	NaN	1	0	Median	0.75762	0.91806	NaN	1	0	Median	1.0743	1.0922	NaN	1	0	Median	0.87684	0.96152	NaN	1	0	Median	90573000	47725000	42847000	20571000	10339000	10232000	20818000	10634000	10184000	27514000	14561000	12953000	21669000	12191000	9478400	32407	4631	30678	200620;200621;200622;200623	271357;271358;271359;271360;271361	271361			5	
LLSVEGSTLR	0	Unmodified	1073.6081	0.60807369	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	44.392	43.421	2	0.00041175	37155	160511_QHF_FH_JSI12i_2	89.698	34.922			1.0668	1.0377	22.248	4	0	Median	1.0738	0.93579	NaN	1	0	Median	1.0598	1.2713	NaN	1	0	Median	1.1505	1.1508	NaN	1	0	Median	0.70565	0.77121	NaN	1	0	Median	705880000	349690000	356180000	124030000	53824000	70208000	150050000	73817000	76238000	242840000	118190000	124650000	188950000	103870000	85081000	32408	100	30679	200624;200625;200626;200627;200628	271362;271363;271364;271365;271366;271367	271363			6	
LLSVFMSR	0	Unmodified	951.52117	0.52117293	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			69.104	61.428	2	0.00082101	33713	160513_QHF_FH_JSI10Kac_6	107.01	62.286			0.8097	0.95627	103.92	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8097	0.95627	103.92	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120300000	67507000	52789000	0	0	0	120300000	67507000	52789000	0	0	0	0	0	0	32409	2947	30680	200629;200630	271368;271369	271369			2	
LLSVLKHMPQK	2	Acetyl (K)	1334.7744	0.77442751	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.186	56.546	3	0.035294	30647	160513_QHF_FH_JSI11Kac_6	36.955	27.766			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8216100	8216100	0	0	0	0	0	0	0	8216100	8216100	0	0	0	0	32410	1718	30681	200631	271370	271370			1	
LLSVNIR	0	Unmodified	813.50724	0.50723743	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.38			4					1	3	3	2	2	1	48.691	43.503	2	0.009255	36528	160511_QHF_FH_JSI10i_3	79.939	0			0.95692	0.93342	33.613	8	0	Median	1.5609	1.2463	42.919	3	0	Median	0.839	0.97408	19.014	2	0	Median	0.88843	0.83181	4.3469	2	0	Median	0.86791	0.89775	NaN	1	0	Median	1762900000	851780000	911090000	356010000	133590000	222420000	573490000	305110000	268380000	380740000	191590000	189160000	452630000	221490000	231130000	32411	878	30682	200632;200633;200634;200635;200636;200637;200638;200639	271371;271372;271373;271374	271372			4	
LLSVQQDFTSGLK	1	Unmodified	1434.7718	0.77184455	4060	Q96EV8	DTNBP1	Dysbindin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.409	68.11	2	0.0058242	58644	160511_QHF_FH_JSI12i_2	77.744	57.982			0.97324	1.0789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97324	1.0789	NaN	1	0	Median	28259000	15028000	13231000	0	0	0	0	0	0	0	0	0	28259000	15028000	13231000	32412	4060	30683	200640	271375	271375			0	
LLSVVPVPEGYSVK	1	Unmodified	1485.8443	0.84428121	4597	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.51	4	3						1		1	2	3	2	78.107	76.229	2	3.5281E-06	70015	160511_QHF_FH_JSI11i_1	122.42	95.306			0.99629	1.0559	11.75	8	6	Median	1.2392	1.0118	NaN	1	0	Median	0.93255	1.1114	6.8237	2	2	Median	1.0325	1.0259	9.7979	3	2	Plateau	1.0967	1.1804	6.2628	2	2	Median	444290000	245250000	199040000	24281000	12609000	11672000	124870000	69438000	55435000	170140000	91584000	78560000	124990000	71624000	53369000	32413	4597	30684	200641;200642;200643;200644;200645;200646;200647;200648	271376;271377;271378;271379;271380;271381;271382;271383;271384	271376			8	
LLSWLGSIIGYSDGLRR	0	Unmodified	1905.0472	0.047231549	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.964	86.243	3	0.017994	49296	160513_QHF_FH_JSI10Kac_6	42.191	23.359			1.3072	1.5643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3072	1.5643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91551000	35970000	55581000	0	0	0	91551000	35970000	55581000	0	0	0	0	0	0	32414	3430	30685	200649	271385	271385			1	
LLSWSDNWR	0	Unmodified	1175.5724	0.57235688	3703	Q8TCD5	NT5C	5'(3')-deoxyribonucleotidase, cytosolic type	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				67.698	66.208	2	0.016036	54409	160511_QHF_FH_JSI9i_3	49.418	44.43			1.4617	1.206	NaN	1	0	Median	1.4617	1.206	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31564000	11446000	20118000	31564000	11446000	20118000	0	0	0	0	0	0	0	0	0	32415	3703	30686	200650	271386	271386			1	
LLSYQTSLVSDGETWHVMGISSLLPSLEAWK	1	Unmodified	3446.7432	0.74319354	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.673	89.253	3;4	0	50498	160513_QHF_FH_JSI11Kac_6	416.62	384.21			0.87439	0.92548	9.8077	8	0	Median	1.2259	1.0335	9.2356	2	0	Median	0.8183	0.97276	5.9469	2	0	Median	0.87904	0.84184	1.728	2	0	Median	0.84355	0.88216	5.6806	2	0	Median	9127700000	4659600000	4468200000	2168400000	967800000	1200600000	4136900000	2227700000	1909200000	1108900000	596840000	512060000	1713500000	867190000	846290000	32416	309	30687	200651;200652;200653;200654;200655;200656;200657;200658	271387;271388;271389;271390;271391;271392;271393;271394;271395;271396;271397;271398;271399;271400;271401	271388			15	
LLSYQTSLVSDGETWHVMGISSLLPSLEAWK	1	Oxidation (M)	3462.7381	0.73810817	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	96.709	88.291	3;4	9.1293E-185	52628	160513_QHF_FH_JSI10Kac_6	282.62	253.08			0.69235	0.73489	15.043	4	1	Median	1.1189	0.97795	NaN	1	0	Median	0.6075	0.71611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69235	0.73271	4.083	2	1	Median	1002500000	512460000	490020000	313080000	127840000	185240000	246500000	149110000	97395000	0	0	0	442890000	235510000	207380000	32417	309	30687	200659;200660;200661;200662	271402;271403;271404;271405;271406	271406		122	5	
LLTAAPNVFHNPVEK	1	Unmodified	1648.8937	0.89369102	2828	Q49AM1	MTERF2	Transcription termination factor 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.97	60.695	3	0.00032733	52290	160511_QHF_FH_JSI12i_3	75.574	62.742			1.9011	1.9262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9011	1.9262	NaN	1	1	Median	34651000	13997000	20654000	0	0	0	0	0	0	0	0	0	34651000	13997000	20654000	32418	2828	30688	200663	271407	271407			1	
LLTAEADK	1	Unmodified	859.4651	0.46509784	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	16.611	16.154	2	0.014666	13562	160511_QHF_FH_JSI10i_1	50.04	16.525			0.86267	0.87656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86267	0.87656	NaN	1	1	Median	129000000	72525000	56479000	0	0	0	0	0	0	0	0	0	129000000	72525000	56479000	32419	350	30689	200664;200665	271408;271409	271409			2	
LLTAHGQGYGK	1	Unmodified	1143.6037	0.60365701	3787	Q8WVT3	TRAPPC12	Trafficking protein particle complex subunit 12	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			15.047	14.115	2	0.003394	11278	160511_QHF_FH_JSI10i_3	58.676	51.483			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32420	3787	30690	200666	271410	271410			1	
LLTAPELILDQWFQLSSSGPNSR	0	Unmodified	2571.3333	0.33330239	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.397	93.677	3	3.4284E-09	55003	160513_QHF_FH_JSI10Kac_6	89.946	82.325			1.4928	1.7615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4928	1.7615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78948000	38158000	40790000	0	0	0	78948000	38158000	40790000	0	0	0	0	0	0	32421	4399	30691	200667	271411	271411			1	
LLTATNLVTLPNSR	0	Unmodified	1511.8671	0.86714192	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	73.795	73.062	2	0.00012944	63426	160511_QHF_FH_JSI12i_3	100.04	76.048			0.90369	0.94038	11.874	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79588	0.9655	11.29	2	0	Median	1.0155	0.95526	6.4835	2	0	Median	0.79441	0.85086	18.41	2	0	Median	168480000	92037000	76445000	0	0	0	49407000	32592000	16815000	59876000	29741000	30136000	59199000	29705000	29494000	32422	641	30692	200668;200669;200670;200671;200672;200673	271412;271413;271414	271414			2	
LLTDDGNK	1	Unmodified	874.43961	0.43961137	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	12.983	10.248	2	0.00063796	9248	160511_QHF_FH_JSI12i_1	101.64	55.273			0.96798	1.0248	8.0422	6	0	Median	1.2211	1.0075	NaN	1	0	Median	0.82471	0.97715	9.1531	2	0	Median	1.0112	0.988	12.869	2	0	Median	1.02	1.0807	NaN	1	0	Median	3038100000	1425100000	1613000000	745520000	272540000	472970000	785500000	424950000	360540000	699760000	344130000	355630000	807310000	383500000	423810000	32423	2370	30693	200674;200675;200676;200677;200678;200679	271415;271416;271417;271418;271419;271420;271421	271417			7	
LLTDVQLMK	1	Unmodified	1059.5998	0.59981719	2156	Q00613	HSF1	Heat shock factor protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.612	59.289	2	0.0058627	50786	160511_QHF_FH_JSI12i_2	63.673	30.157			1.0986	1.2094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0986	1.2094	NaN	1	1	Median	59847000	36558000	23289000	0	0	0	0	0	0	0	0	0	59847000	36558000	23289000	32424	2156	30694	200680	271422	271422			1	
LLTECPPMMDTEYTK	1	Unmodified	1827.8093	0.80929397	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	64.868	64.254	2	3.959E-21	58680	160511_QHF_FH_JSI12i_1	136.27	120.38			1.0099	1.0425	26.809	4	3	Median	1.0061	0.82215	NaN	1	1	Median	0.94656	1.1064	NaN	1	0	Median	1.0138	0.98234	NaN	1	1	Median	1.5086	1.5526	NaN	1	1	Median	348390000	155870000	192520000	56180000	28813000	27368000	91827000	46368000	45459000	98243000	46577000	51666000	102140000	34109000	68029000	32425	1844	30695	200681;200682;200683;200684;200685;200686	271423;271424;271425;271426;271427;271428;271429;271430	271426			8	
LLTEEGQK	1	Unmodified	916.48656	0.48656157	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			2	1	2	2	14.759	12.254	2	0.0057881	10540	160511_QHF_FH_JSI12i_1	64.567	19.846			0.98519	1.0545	17.511	7	0	Median	1.1921	1.0087	32.288	2	0	Median	0.81997	0.95399	NaN	1	0	Median	1.0599	1.0447	23.3	2	0	Median	1.0419	1.1153	7.935	2	0	Median	1540900000	729870000	811070000	354490000	134140000	220350000	371350000	222560000	148790000	398560000	175020000	223540000	416540000	198150000	218390000	32426	3071	30696	200687;200688;200689;200690;200691;200692;200693	271431;271432;271433;271434;271435;271436	271431			6	
LLTEHVFR	0	Unmodified	1013.5658	0.56581494	3327	Q86UN3	RTN4RL2	Reticulon-4 receptor-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			37.241	35.776	3	0.00038386	29740	160511_QHF_FH_JSI10i_3	79.906	56.478			1.1624	1.1197	17.538	2	0	Median	1.54	1.2675	NaN	1	0	Median	0.87732	0.98909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	282300000	115700000	166600000	139370000	48753000	90615000	142930000	66944000	75989000	0	0	0	0	0	0	32427	3327	30697	200694;200695	271437;271438	271437			2	
LLTEIHGGAGGPSGR	0	Unmodified	1420.7423	0.74227576	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	26.324	25.662	2;3	1.5463E-07	21245	160511_QHF_FH_JSI12i_3	93.345	59.967			0.89508	0.98943	49.885	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1667	1.4144	62.56	2	2	Median	0.70674	0.68214	NaN	1	0	Median	1.0677	1.0772	NaN	1	0	Median	509390000	256780000	252610000	0	0	0	173260000	76025000	97236000	172130000	96273000	75853000	164010000	84484000	79523000	32428	2761	30698	200696;200697;200698;200699;200700;200701;200702	271439;271440;271441;271442;271443;271444;271445;271446;271447	271447			9	
LLTELEGELLR	0	Unmodified	1284.7289	0.7289171	5765				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	90.832	90.297	2	0.029221	80213	160511_QHF_FH_JSI10i_2	40.002	16.573	+		0.90665	1.0092	3.9734	5	0	Median	1.1552	0.97572	NaN	1	0	Median	0.82872	1.0395	0	2	0	Median	0.95809	0.9498	NaN	1	0	Median	0.90665	1.0092	NaN	1	0	Median	553080000	279030000	274060000	64898000	31688000	33210000	209460000	108310000	101150000	205350000	102650000	102700000	73380000	36381000	36998000	32429	5765	30699	200703;200704;200705;200706;200707	271448	271448			1	
LLTEMVMSHSQGGAAAGSSEDLMK	1	Unmodified	2449.1287	0.12873063	5356	Q9UJY5	GGA1	ADP-ribosylation factor-binding protein GGA1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	65.092	64.739	3	9.908E-41	55974	160511_QHF_FH_JSI12i_3	208.39	187.95			0.79135	0.76888	57.996	4	4	Linear	NaN	NaN	NaN	0	0	Median	2.3062	2.7894	NaN	1	1	Median	0.87988	0.84277	NaN	1	1	Median	1.0402	1.0682	40.269	2	2	Median	238020000	122370000	115650000	0	0	0	53560000	21671000	31889000	64708000	39763000	24945000	119750000	60941000	58813000	32430	5356	30700	200708;200709;200710;200711	271449;271450;271451;271452;271453	271453			5	
LLTETEDWLYEEGEDQAK	1	Unmodified	2167.9797	0.97972465	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	3	1	2	77.755	77.36	2;3	7.3623E-38	70090	160511_QHF_FH_JSI10i_1	237.32	206.43			1.0041	1.0256	41.944	7	3	Median	0.61211	0.51772	NaN	1	1	Median	1.595	1.8451	33.724	3	2	Plateau	0.99746	0.98053	NaN	1	0	Median	1.2599	1.2808	31.432	2	0	Median	655830000	314490000	341350000	30895000	24062000	6833300	334780000	147730000	187050000	44823000	23921000	20902000	245340000	118770000	126570000	32431	3852	30701	200712;200713;200714;200715;200716;200717;200718	271454;271455;271456;271457;271458;271459;271460;271461;271462;271463	271462			10	
LLTFASQLK	1	Unmodified	1019.6015	0.60153174	5456;5314	Q9UHW9;Q9UP95	SLC12A6;SLC12A4	Solute carrier family 12 member 6;Solute carrier family 12 member 4	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	59.76	59.165	2	0.00067579	50908	160511_QHF_FH_JSI12i_3	85.676	32.121			1.1281	1.0793	9.8243	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1281	1.3057	NaN	1	0	Median	1.2534	1.1501	NaN	1	0	Median	1.0913	1.0761	NaN	1	0	Median	439140000	204130000	235000000	0	0	0	69290000	29812000	39477000	152570000	74614000	77952000	217280000	99706000	117580000	32432	5314;5456	30702	200719;200720;200721	271464;271465;271466	271466			3	
LLTFMGMAVENK	1	Oxidation (M)	1368.6781	0.67814386	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.32			5					2	4	2	4	2	3	70.031	64.612	2	9.2501E-16	33585	160513_QHF_FH_JSI12Kac_6	139.86	94.49			0.91454	0.84771	21.539	11	3	Median	0.95748	0.81781	0.7952	2	0	Median	0.65706	0.77673	17.939	4	2	Median	0.83617	0.76849	13.876	2	0	Median	1.321	1.3481	17.216	3	1	Plateau	736890000	376260000	360630000	82309000	42650000	39659000	103770000	59838000	43928000	196170000	120840000	75331000	354640000	152930000	201710000	32433	3222	30703	200722;200723;200724;200725;200726;200727;200728;200729;200730;200731;200732	271467;271468;271469;271470;271471;271472;271473;271474;271475;271476;271477;271478;271479;271480	271479		2225;2226	14	
LLTFMGMAVENK	1	Unmodified	1352.6832	0.68322924	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.28	6.47		9	7					1	8	5	7	6	7	81.836	78.604	2;3	3.1083E-78	70378	160511_QHF_FH_JSI12i_3	247.54	194.83			1.058	1.0991	39.579	24	7	Median	1.1681	1.0121	19.442	5	1	Median	1.0078	1.1986	33.007	6	1	Median	1.1511	1.1055	67.401	6	2	Median	0.97683	1.1209	31.814	7	3	Median	5138700000	2551700000	2587100000	1036400000	485930000	550440000	1345900000	787140000	558770000	1272900000	603460000	669450000	1483500000	675140000	808390000	32434	3222	30703	200733;200734;200735;200736;200737;200738;200739;200740;200741;200742;200743;200744;200745;200746;200747;200748;200749;200750;200751;200752;200753;200754;200755;200756;200757	271481;271482;271483;271484;271485;271486;271487;271488;271489;271490;271491;271492;271493;271494;271495;271496;271497;271498;271499;271500;271501;271502;271503;271504;271505;271506;271507;271508;271509;271510;271511;271512;271513;271514;271515;271516;271517;271518;271519;271520;271521;271522	271516			40	
LLTFMGMAVENK	1	2 Oxidation (M)	1384.6731	0.67305848	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By MS/MS	15.6	0.49								2	3	2	1		2	58.644	48.552	2	0.0056258	25948	160513_QHF_FH_JSI9Kac_6	86.898	66.595			0.84795	0.90688	24.176	4	2	Median	1.2608	1.0831	NaN	1	1	Median	0.55355	0.63915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84795	0.90688	16.975	2	1	Median	20563000	9162300	11400000	8901500	3294900	5606600	3068300	1741400	1326800	0	0	0	8592800	4125900	4466900	32435	3222	30703	200758;200759;200760;200761;200762	271523;271524;271525;271526;271527	271526		2225;2226	5	
LLTGELLPTDGMIRK	1	Unmodified	1655.928	0.92802762	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	1	3	73.145	72.398	2;3	3.7123E-07	62768	160511_QHF_FH_JSI12i_3	135.66	102.28			1.0034	1.0173	30.063	7	3	Median	1.0034	0.81439	NaN	1	0	Median	1.0267	1.1912	22.328	2	1	Median	1.0994	1.0419	NaN	1	0	Median	0.8879	0.90702	44.493	3	2	Median	954690000	456610000	498080000	39301000	19799000	19502000	137980000	66691000	71291000	286290000	125720000	160570000	491120000	244400000	246720000	32436	5279	30704	200763;200764;200765;200766;200767;200768;200769	271528;271529;271530;271531;271532;271533;271534;271535;271536	271535			9	
LLTGLYR	0	Unmodified	834.49634	0.49633839	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	42.007	41.181	2	0.0030918	35139	160511_QHF_FH_JSI12i_3	106.76	24.498			1.0307	1.0073	12.191	4	0	Median	1.1113	0.90012	NaN	1	0	Median	0.93129	1.0788	NaN	1	0	Median	1.2392	1.1718	NaN	1	0	Median	0.95602	0.94045	NaN	1	0	Median	967490000	439850000	527640000	187550000	89588000	97958000	181440000	98989000	82450000	256260000	111480000	144780000	342250000	139800000	202450000	32437	5669	30705	200770;200771;200772;200773	271537;271538;271539;271540	271539			4	
LLTGVEYVVGRK	1	Unmodified	1332.7765	0.776536	462	O60934	NBN	Nibrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	54.077	53.237	3	0.0021015	44632	160511_QHF_FH_JSI10i_3	57.802	35.756			0.58856	0.62557	146.2	4	4	Median	2.7046	2.2316	NaN	1	1	Median	1.826	2.16	NaN	1	1	Median	0.1897	0.18118	NaN	1	1	Median	0.17069	0.16829	NaN	1	1	Median	670140000	538650000	131490000	41366000	16304000	25061000	56149000	25920000	30230000	232110000	193590000	38513000	340510000	302830000	37682000	32438	462	30706	200774;200775;200776;200777	271541;271542;271543;271544	271542			4	
LLTGWMPTAIR	0	Unmodified	1257.6904	0.69036353	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							2	2	1	1	80.969	80.003	2	7.6631E-08	67005	160511_QHF_FH_JSI10i_3	125.56	84.576			0.75662	0.82733	23.868	6	0	Median	1.2317	1.0353	13.346	2	0	Median	0.65568	0.78058	18.202	2	0	Median	0.73896	0.77098	NaN	1	0	Median	0.52508	0.58263	NaN	1	0	Median	247060000	145600000	101470000	98726000	54974000	43751000	102500000	61244000	41255000	37119000	24369000	12750000	8719600	5009600	3710000	32439	2303	30707	200778;200779;200780;200781;200782;200783	271545;271546;271547;271548;271549;271550;271551	271546			7	
LLTIGDANGEIQR	0	Unmodified	1398.7467	0.74669243	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	52.718	51.77	2	3.2928E-10	44778	160511_QHF_FH_JSI11i_2	145.46	107.98			0.88106	0.88999	23.751	3	2	Median	NaN	NaN	NaN	0	0	Median	0.64635	0.77731	NaN	1	1	Median	0.88106	0.88999	NaN	1	0	Median	1.1105	1.2338	NaN	1	1	Median	374570000	194830000	179740000	0	0	0	75008000	44648000	30360000	170400000	88488000	81913000	129160000	61698000	67463000	32440	3371	30708	200784;200785;200786;200787	271552;271553;271554;271555;271556;271557;271558	271555			7	
LLTLEVPGVTESRPSVLR	0	Unmodified	1965.1259	0.1258758	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			83.103	81.821	3	0.00020587	68580	160511_QHF_FH_JSI10i_3	58.09	47.809			1.0079	0.97349	13.973	2	1	Median	1.3121	1.0746	NaN	1	1	Median	0.77425	0.88191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79080000	34711000	44368000	47169000	19347000	27822000	31911000	15365000	16546000	0	0	0	0	0	0	32441	4856	30709	200788;200789	271559;271560	271559			2	
LLTLFNPDLANNYK	1	Unmodified	1634.8668	0.86680757	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	89.554	88.827	2	0.00026007	76739	160511_QHF_FH_JSI12i_2	104.52	79.306			1.6642	1.7262	10.387	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7003	1.604	NaN	1	1	Median	1.6287	1.8578	NaN	1	1	Median	26206000	7281500	18924000	0	0	0	0	0	0	16167000	4152500	12014000	10039000	3128900	6910500	32442	5620	30710	200790;200791;200792	271561;271562;271563	271561			3	
LLTLPNGER	0	Unmodified	1011.5713	0.57129425	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	42.494	41.675	2	0.0062509	35703	160511_QHF_FH_JSI12i_2	54.776	31.734			0.84914	0.95383	20.63	5	4	Median	1.2925	1.0991	NaN	1	1	Median	0.62192	0.776	NaN	1	1	Median	0.83803	0.83104	NaN	1	1	Median	1.0505	1.1087	21.273	2	1	Median	835390000	404070000	431320000	158560000	64633000	93928000	170310000	96238000	74077000	204800000	113310000	91481000	301720000	129890000	171830000	32443	2517	30711	200793;200794;200795;200796;200797;200798	271564;271565;271566;271567;271568;271569	271564			6	
LLTNFLPLK	1	Unmodified	1057.6536	0.65356732	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	84.242	83.737	2	0.00027181	73782	160511_QHF_FH_JSI11i_2	96.253	73.761			0.90493	0.84878	14.533	6	2	Median	1.0382	0.87172	NaN	1	0	Median	0.61201	0.75992	NaN	1	0	Median	0.90493	0.87071	7.3799	2	2	Median	0.8996	0.91743	27.626	2	0	Median	189040000	98847000	90188000	26662000	14158000	12504000	24040000	14317000	9723000	60752000	30155000	30598000	77581000	40217000	37363000	32444	17	30712	200799;200800;200801;200802;200803;200804	271570;271571;271572;271573;271574;271575	271573			6	
LLTNLGLGERK	1	Unmodified	1212.719	0.71902112	5397	Q9ULF5	SLC39A10	Zinc transporter ZIP10	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.841	43.241	3	0.026131	35356	160511_QHF_FH_JSI9i_3	33.589	20.452			1.7625	1.4523	NaN	1	1	Median	1.7625	1.4523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21324000	7799800	13525000	21324000	7799800	13525000	0	0	0	0	0	0	0	0	0	32445	5397	30713	200805	271576	271576			1	
LLTNTHHK	1	Unmodified	962.52976	0.52976379	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	5.0242	4.7296	3	0.0044705	2416	160511_QHF_FH_JSI12i_3	47.198	20.755			0.90734	0.73473	19.08	3	0	Plateau	1.1885	0.97258	NaN	1	0	Median	0.60532	0.73473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69267	0.67561	NaN	1	0	Median	349330000	164260000	185070000	134600000	46911000	87693000	86914000	49031000	37883000	0	0	0	127810000	68322000	59493000	32446	3087	30714	200806;200807;200808	271577	271577			1	
LLTPAEEVLTEEER	0	Unmodified	1627.8305	0.83048164	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.38	69.77	2	0.0029256	61102	160511_QHF_FH_JSI11i_2	67.385	37.641			1.5024	1.4953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5024	1.4953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26789000	8931300	17858000	0	0	0	0	0	0	26789000	8931300	17858000	0	0	0	32447	4580	30715	200809	271578	271578			1	
LLTQDEGPALVPGGR	0	Unmodified	1521.8151	0.81510635	2945	Q5T440	IBA57	Putative transferase CAF17, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			54.426	54.027	2	0.01044	47345	160511_QHF_FH_JSI9i_2	45.915	19.977			0.76768	0.87282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76768	0.87282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24557000	16642000	7915300	0	0	0	24557000	16642000	7915300	0	0	0	0	0	0	32448	2945	30716	200810;200811	271579;271580	271580			2	
LLTQFPNAEK	1	Unmodified	1159.6237	0.62372375	4765;2511	Q14185;Q9H7D0	DOCK1;DOCK5	Dedicator of cytokinesis protein 1;Dedicator of cytokinesis protein 5	no	no	0	0	0	0				By MS/MS	2	0		1											1	45.786	44.395	2	0.013578	37991	160511_QHF_FH_JSI12i_2	53.683	28.76			1.5602	1.7448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5602	1.7448	NaN	1	1	Median	46453000	18181000	28272000	0	0	0	0	0	0	0	0	0	46453000	18181000	28272000	32449	2511;4765	30717	200812	271581	271581			1	
LLTQGFTNWNK	1	Unmodified	1320.6826	0.68263561	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	3	2	2	3	63.329	59.884	2	7.6326E-13	52616	160511_QHF_FH_JSI9i_2	142.43	93.009			0.9382	0.95391	10.703	10	1	Median	1.056	0.86185	9.8131	3	1	Median	0.76896	0.89458	10.731	2	0	Median	1.1494	1.0905	8.4606	2	0	Median	0.95904	0.95624	2.6082	3	0	Plateau	2737600000	1500400000	1237100000	489690000	257980000	231700000	531880000	295270000	236610000	735720000	360370000	375350000	980290000	586810000	393480000	32450	403	30718	200813;200814;200815;200816;200817;200818;200819;200820;200821;200822	271582;271583;271584;271585;271586;271587;271588;271589;271590;271591;271592;271593;271594;271595;271596;271597;271598;271599;271600;271601;271602;271603	271595			22	
LLTQHENIK	1	Unmodified	1094.6084	0.60840804	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	14.772	14.804	2	0.0017681	11568	160511_QHF_FH_JSI12i_3	76.478	45.174			2.2952	2.2443	13.277	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6207	2.4653	NaN	1	0	Median	2.0102	2.0432	NaN	1	1	Median	74446000	34182000	40264000	0	0	0	0	0	0	37734000	17319000	20415000	36712000	16863000	19849000	32451	2162	30719	200823;200824;200825	271604;271605;271606	271606			3	
LLTQYFVQENYLEYR	0	Unmodified	1977.9836	0.98362824	1563	P43360	MAGEA6	Melanoma-associated antigen 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.218	87.662	2	0.0042548	77119	160511_QHF_FH_JSI11i_2	65.574	52.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32452	1563	30720	200826	271607	271607			1	
LLTQYILNLGK	1	Unmodified	1274.7598	0.7598233	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	2	1	2	86.814	85.432	2	5.5024E-18	75558	160511_QHF_FH_JSI12i_3	159.37	107.51			0.9929	0.98664	22.991	6	1	Median	1.1209	0.95221	NaN	1	0	Median	0.7365	0.88699	15.869	2	0	Median	0.98953	0.98099	NaN	1	0	Median	1.2028	1.2744	30.856	2	1	Median	730130000	347500000	382620000	39343000	19393000	19950000	257260000	152620000	104630000	32844000	16809000	16035000	400680000	158680000	242000000	32453	107	30721	200827;200828;200829;200830;200831;200832	271608;271609;271610;271611;271612;271613;271614;271615;271616;271617;271618	271617			10	
LLTSFLPAQLLR	0	Unmodified	1370.8286	0.82857157	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.96	3	4	8						5	4	6	5	5	98.889	96.68	2;3	1.3778E-53	89712	160511_QHF_FH_JSI10i_2	222.42	149.17			0.94198	1.0043	25.453	20	4	Median	1.1354	0.98084	32.417	4	0	Median	0.88855	1.0056	17.588	6	2	Median	1.119	1.0485	26.234	5	2	Median	0.82573	0.82657	19.548	5	0	Median	41932000000	21038000000	20894000000	8544700000	3811000000	4733700000	17960000000	9321900000	8638600000	7344500000	3474700000	3869800000	8082600000	4430700000	3651900000	32454	895	30722	200833;200834;200835;200836;200837;200838;200839;200840;200841;200842;200843;200844;200845;200846;200847;200848;200849;200850;200851;200852	271619;271620;271621;271622;271623;271624;271625;271626;271627;271628;271629;271630;271631;271632;271633;271634;271635;271636;271637;271638;271639;271640;271641;271642;271643;271644;271645	271638			27	
LLTSGIVIQVFPLHDSEALK	1	Unmodified	2179.2253	0.22525549	5059	Q9NW15	ANO10	Anoctamin-10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	100.59	100.6	3	1.7308E-06	87180	160511_QHF_FH_JSI12i_3	92.993	87.539			0.8588	0.90321	11.827	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8588	0.90321	11.827	2	2	Median	57567000	21120000	36448000	0	0	0	0	0	0	12188000	0	12188000	45379000	21120000	24260000	32455	5059	30723	200853;200854;200855	271646;271647;271648	271647			3	
LLTSGYLQR	0	Unmodified	1049.5869	0.58694431	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.6	6.22			2					1	2	1		2	2	45.93	39.921	2	0.0030544	34397	160511_QHF_FH_JSI12i_3	61.999	18.753			0.80462	0.77441	29.182	5	0	Median	0.72097	0.58198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89619	0.86036	15.075	2	0	Median	0.95068	0.9945	35.375	2	0	Median	1103200000	593720000	509490000	5547900	2977800	2570100	0	0	0	477360000	244080000	233280000	620300000	346660000	273640000	32456	4077	30724	200856;200857;200858;200859;200860	271649;271650;271651;271652;271653;271654	271654			6	
LLTSLFQDLQVEALHK	1	Unmodified	1854.0251	0.025099124	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	100.27	100.17	2;3	2.4166E-07	86685	160511_QHF_FH_JSI12i_3	95.401	54.118			0.99257	0.94339	40.472	5	1	Median	1.0835	0.94339	NaN	1	0	Median	0.73397	0.92836	NaN	1	0	Median	0.99257	0.98147	NaN	1	0	Median	0.96707	1.069	79.817	2	1	Median	131980000	69569000	62410000	33715000	16339000	17376000	41101000	22443000	18659000	18190000	8106400	10083000	38973000	22681000	16292000	32457	2947	30725	200861;200862;200863;200864;200865;200866;200867	271655;271656;271657;271658;271659;271660;271661;271662;271663	271663			9	
LLTSLLK	1	Unmodified	786.52149	0.52149051	446	O60763	USO1	General vesicular transport factor p115	yes	no	0	0	0	0			By MS/MS		3	0			1									1		53.948	53.948	2	0.040857	47719	160511_QHF_FH_JSI11i_3	49.358	7.8563			0.39402	0.37182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39402	0.37182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	193910000	103970000	89935000	0	0	0	0	0	0	193910000	103970000	89935000	0	0	0	32458	446	30726	200868	271664	271664			1	
LLTSSAVHK	1	Unmodified	954.54983	0.54983053	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.79	0.41		3	11							4	5	3	2	14.419	13.866	2;3	0.018662	10824	160511_QHF_FH_JSI10i_3	29.473	0.51686			1.1054	1.0906	87.173	14	2	Median	1.0642	0.86991	106.29	4	1	Median	1.0858	1.2371	103.4	5	0	Median	1.1615	1.1022	60.312	3	1	Median	0.61956	0.62988	12.699	2	0	Median	7186000000	3171400000	4014600000	1682000000	730650000	951330000	2443600000	929820000	1513800000	2157700000	965230000	1192500000	902690000	545670000	357020000	32459	5468	30727	200869;200870;200871;200872;200873;200874;200875;200876;200877;200878;200879;200880;200881;200882	271665;271666;271667;271668;271669;271670;271671	271665			7	
LLTSYGFIQCSER	0	Unmodified	1572.7606	0.76062794	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11.7	6.13			1						2	1		2		68.417	62.403	2	2.8799E-25	33816	160513_QHF_FH_JSI11Kac_6	171.67	142.97			0.75358	0.71259	12.825	3	0	Plateau	1.0432	0.90771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78206	0.72968	3.352	2	0	Median	NaN	NaN	NaN	0	0	Median	356970000	205120000	151840000	35053000	16279000	18774000	0	0	0	321910000	188840000	133070000	0	0	0	32460	543	30728	200883;200884;200885	271672;271673;271674;271675;271676;271677	271675			6	
LLTTDQK	1	Unmodified	817.45453	0.45453316	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.728	11.322	2	0.013531	9094	160511_QHF_FH_JSI10i_1	69.998	19.879			1.9416	1.4105	9.1032	3	3	Plateau	1.9416	1.6194	NaN	1	1	Median	1.1661	1.4105	NaN	1	1	Median	1.4151	1.3638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	238060000	100450000	137610000	77909000	24039000	53870000	80204000	39639000	40565000	79948000	36772000	43176000	0	0	0	32461	3826	30729	200886;200887;200888;200889	271678;271679;271680;271681	271680			4	
LLTTIGK	1	Unmodified	744.47454	0.47454032	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.75	6.4	1	4						3		2	3	3		32.99	29.649	2	0.016755	25649	160511_QHF_FH_JSI9i_2	63.148	16.484			0.55898	0.465	55.209	7	5	Median	0.77862	0.64624	46.546	2	1	Median	0.63969	0.78879	77.239	2	2	Median	0.29926	0.30526	59.852	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1991100000	1214500000	776570000	619800000	449540000	170250000	767440000	448460000	318980000	603880000	316540000	287330000	0	0	0	32462	334;2217	30730	200890;200891;200892;200893;200894;200895;200896;200897	271682;271683;271684;271685;271686;271687;271688;271689	271684			8	
LLTTILHSDGDLTEQGK	1	Unmodified	1839.9578	0.95780742	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							2	2	4	5	59.535	59.051	2;3	2.4795E-24	50860	160511_QHF_FH_JSI12i_3	136.63	123.84			1.2238	1.2222	59.996	9	9	Median	1.4552	1.2222	NaN	1	1	Median	1.2238	1.5227	NaN	1	1	Median	2.2038	2.1075	73.783	3	3	Plateau	0.86328	0.85134	75.09	4	4	Median	700930000	307820000	393110000	61793000	31721000	30072000	95369000	57181000	38188000	212260000	82493000	129770000	331510000	136420000	195080000	32463	4988	30731	200898;200899;200900;200901;200902;200903;200904;200905;200906;200907;200908;200909;200910	271690;271691;271692;271693;271694;271695;271696;271697;271698;271699;271700;271701;271702	271702			13	
LLTVFAYGTYADYLAEAR	0	Unmodified	2036.0255	0.025493054	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	1	2	3	93.252	84.578	2;3	1.4737E-56	47375	160513_QHF_FH_JSI11Kac_6	247.32	196.31			1.1595	1.2468	12.659	5	2	Median	NaN	NaN	NaN	0	0	Median	0.87905	1.0354	NaN	1	1	Median	1.3667	1.309	0.72722	2	0	Median	1.0501	1.1254	14.489	2	1	Median	443310000	207580000	235730000	0	0	0	62344000	34742000	27602000	245070000	102370000	142700000	135900000	70468000	65430000	32464	5261	30732	200911;200912;200913;200914;200915;200916;200917	271703;271704;271705;271706;271707;271708;271709	271704			7	
LLTVPFEK	1	Unmodified	945.55352	0.55351892	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.829	1	1	2							1	1	1	1	63.385	62.194	2	0.003017	53313	160511_QHF_FH_JSI12i_2	82.452	40.95			0.95781	0.93306	22.457	4	3	Median	0.96008	0.79472	NaN	1	1	Median	0.99361	1.1529	NaN	1	0	Median	0.75982	0.73775	NaN	1	1	Median	0.95554	1.0955	NaN	1	1	Median	516590000	235120000	281470000	71441000	34593000	36849000	53123000	28321000	24802000	88839000	46769000	42071000	303180000	125430000	177750000	32465	677	30733	200918;200919;200920;200921	271710;271711;271712;271713	271711			4	
LLTVPFEKHSTL	1	Acetyl (K)	1425.7868	0.78676633	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		82.271	72.345	2	6.4032E-20	38312	160513_QHF_FH_JSI11Kac_5	160.59	112.98			0.28131	0.27787	6.5048	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28131	0.27787	6.5048	2	1	Median	NaN	NaN	NaN	0	0	Median	53603000	47966000	5636800	0	0	0	0	0	0	53603000	47966000	5636800	0	0	0	32466	677	30734	200922;200923	271714;271715	271715	334		2	
LLTVQHPLEESR	0	Unmodified	1420.7674	0.76742787	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.488	35.424	3	0.00028369	30015	160511_QHF_FH_JSI12i_3	55.841	44.987			1.1567	1.1315	39.663	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91437	0.85479	NaN	1	0	Median	1.4632	1.4978	NaN	1	0	Median	116820000	68272000	48545000	0	0	0	0	0	0	49856000	31589000	18267000	66961000	36683000	30278000	32467	3102	30735	200924;200925	271716;271717;271718	271718			3	
LLTWDVKDTLLR	1	Acetyl (K)	1513.8504	0.85042922	4397	Q9BSH5	HDHD3	Haloacid dehalogenase-like hydrolase domain-containing protein 3	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	91.692	82.498	2	2.7472E-15	44447	160513_QHF_FH_JSI12Kac_6	135.66	89.666			1.1281	1.0609	30.597	3	0	Median	1.0067	0.84372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1281	1.0609	NaN	1	0	Median	1.4724	1.5465	NaN	1	0	Median	745140000	341670000	403480000	192380000	108180000	84205000	0	0	0	352280000	156480000	195800000	200480000	77007000	123470000	32468	4397	30736	200926;200927;200928	271719;271720;271721;271722;271723	271722	3149		5	
LLTWVIGTGSPR	0	Unmodified	1298.7347	0.73467118	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	78.082	72.944	2	7.6628E-31	38698	160513_QHF_FH_JSI11Kac_6	180.07	129.19			0.8509	0.89766	12.694	7	0	Median	1.177	0.96809	0.27611	2	0	Median	0.77567	0.91814	14.471	2	0	Median	0.80305	0.75675	8.9448	2	0	Median	0.83687	0.89766	NaN	1	0	Median	1180800000	614180000	566610000	258950000	118170000	140790000	598570000	335440000	263130000	234190000	112840000	121350000	89071000	47742000	41329000	32469	3860	30737	200929;200930;200931;200932;200933;200934;200935	271724;271725;271726;271727;271728;271729;271730;271731;271732;271733	271727			10	
LLTYNAAR	0	Unmodified	920.50797	0.50796571	1571	P45954	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		25.277	24.635	2	0.022593	21541	160511_QHF_FH_JSI10i_2	43.814	17.212			0.8276	0.77088	20.939	4	0	Median	0.86868	0.74814	NaN	1	0	Median	0.69415	0.82948	35.267	2	0	Median	0.78847	0.79431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277540000	157890000	119650000	59118000	29756000	29362000	146520000	85208000	61314000	71899000	42927000	28972000	0	0	0	32470	1571	30738	200936;200937;200938;200939	271734	271734			1	
LLTYNSLYK	1	Unmodified	1113.607	0.60701105	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	52.83	52.008	2	0.0036617	44468	160511_QHF_FH_JSI12i_2	59.35	32.388			0.6987	0.74395	25.498	5	0	Median	0.6987	0.59346	NaN	1	0	Median	0.65733	0.81399	NaN	1	0	Median	0.73697	0.74395	NaN	1	0	Median	0.8365	0.88825	38.417	2	0	Median	458130000	261150000	196980000	91693000	46814000	44879000	99506000	61279000	38227000	133390000	79121000	54274000	133540000	73941000	59596000	32471	4856	30739	200940;200941;200942;200943;200944	271735;271736	271735			2	
LLVATSVAAR	0	Unmodified	999.60768	0.60767975	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.2		1	4					4	4	3	3	4	3	46.238	39.872	2	1.0095E-05	20435	160513_QHF_FH_JSI10Kac_5	105.57	35.3			1.0301	1.0018	22.976	13	1	Median	1.3486	1.1363	7.6872	3	0	Plateau	1.0478	1.239	12.648	3	0	Plateau	0.90514	0.86107	32.332	4	1	Median	0.92102	0.95231	2.6391	3	0	Plateau	1173200000	579500000	593690000	165450000	66571000	98877000	216640000	104160000	112480000	451530000	234710000	216820000	339560000	174060000	165510000	32472	3216	30740	200945;200946;200947;200948;200949;200950;200951;200952;200953;200954;200955;200956;200957	271737;271738;271739;271740;271741;271742;271743;271744;271745;271746;271747;271748;271749;271750;271751;271752;271753;271754;271755	271748			19	
LLVATTFTHSYPFCWR	0	Unmodified	1997.9822	0.98218845	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	84.429	77.054	2;3	2.1335E-246	43490	160513_QHF_FH_JSI10Kac_6	449.49	417.23			1.8716	2.1272	26.995	6	6	Median	3.1056	2.6536	NaN	1	1	Median	1.5095	1.7791	26.085	3	3	Median	1.5478	1.4589	NaN	1	1	Median	2.4104	2.5433	NaN	1	1	Median	4358700000	1999900000	2358800000	101100000	22321000	78776000	4017000000	1906600000	2110400000	163420000	52478000	110940000	77152000	18431000	58721000	32473	1520	30741	200958;200959;200960;200961;200962;200963	271756;271757;271758;271759;271760;271761	271761			6	
LLVDMDPR	0	Unmodified	957.49535	0.49535211	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	50.404	49.583	2	0.014012	42775	160511_QHF_FH_JSI11i_2	51.787	31.505			1.0393	1.1287	20.419	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0719	1.2868	NaN	1	0	Median	1.2303	1.2081	29.335	2	0	Median	0.90793	0.98996	NaN	1	0	Median	145560000	68633000	76923000	0	0	0	26496000	13713000	12783000	80745000	35791000	44954000	38315000	19129000	19186000	32474	3234	30742	200964;200965;200966;200967	271762;271763;271764	271763			3	
LLVDSNNPK	1	Unmodified	998.53966	0.53965977	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	1	0	3									1		1	1	22.817	22.198	2	0.035309	19188	160511_QHF_FH_JSI11i_1	39.022	5.2253			0.93152	0.78503	31.501	3	0	Median	0.93152	0.78503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3457	1.3105	NaN	1	0	Median	0.7183	0.73845	NaN	1	0	Median	127450000	68413000	59037000	36583000	20444000	16139000	0	0	0	43250000	20294000	22956000	47616000	27675000	19942000	32475	1251	30743	200968;200969;200970	271765	271765			1	
LLVDVDESTLSPEEQK	1	Unmodified	1800.8993	0.89928949	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	66.748	66.147	2;3	9.7488E-119	60271	160511_QHF_FH_JSI12i_1	247.13	178.48			1.0363	1.0284	20.379	8	4	Median	1.754	1.431	6.0224	2	1	Median	0.84056	0.98949	0.28664	2	2	Median	0.93628	0.90915	18.996	2	0	Median	1.0957	1.1163	13.152	2	1	Median	740790000	360710000	380080000	107130000	35990000	71135000	232170000	132890000	99281000	202840000	87651000	115190000	198660000	104180000	94475000	32476	542	30744	200971;200972;200973;200974;200975;200976;200977;200978;200979;200980	271766;271767;271768;271769;271770;271771;271772;271773;271774;271775;271776	271771			11	
LLVEDINK	1	Unmodified	942.5386	0.53859714	5397	Q9ULF5	SLC39A10	Zinc transporter ZIP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			44.449	43.629	2	0.020754	39176	160511_QHF_FH_JSI10i_1	56.177	16.879			1.0327	1.0294	13.845	2	2	Median	1.1427	0.93339	NaN	1	1	Median	0.93317	1.1353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101940000	50480000	51464000	35609000	17595000	18014000	66335000	32885000	33449000	0	0	0	0	0	0	32477	5397	30745	200981;200982	271777;271778	271777			2	
LLVEHQAISFMLAEMAMK	1	Unmodified	2061.0461	0.046110616	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.242	84.891	3	8.3691E-12	47515	160513_QHF_FH_JSI11Kac_6	123.19	113.66			1.1242	1.0743	17.861	4	0	Median	1.2089	1.0473	NaN	1	0	Median	0.75878	0.9165	NaN	1	0	Median	1.5039	1.4054	NaN	1	0	Median	1.0455	1.1019	NaN	1	0	Median	894640000	417190000	477450000	244220000	108460000	135760000	276140000	139660000	136490000	187930000	77900000	110030000	186350000	91169000	95180000	32478	997	30746	200983;200984;200985;200986	271779;271780;271781;271782;271783	271779			5	
LLVFGGMVEYGK	1	Unmodified	1311.6897	0.68969482	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	82.68	74.435	2	3.3225E-12	40325	160513_QHF_FH_JSI9Kac_6	125.97	107.3			0.98226	0.93803	15.208	4	0	Median	1.1539	0.99217	NaN	1	0	Median	0.67599	0.78496	NaN	1	0	Median	1.1757	1.1197	NaN	1	0	Median	0.83615	0.88684	NaN	1	0	Median	240170000	131050000	109120000	51849000	20811000	31038000	107660000	74257000	33406000	49855000	20254000	29601000	30807000	15732000	15075000	32479	1743	30747	200987;200988;200989;200990	271784;271785;271786	271785			3	
LLVFSTDAGFHFAGDGK	1	Unmodified	1780.8784	0.87843489	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.33	6.49		1	6						5		2	2	8	83.63	81.141	2;3	1.0428E-31	41925	160513_QHF_FH_JSI10Kac_6	213.82	189.53			1.1002	1.1087	35.432	9	5	Median	NaN	NaN	NaN	0	0	Median	0.6201	0.72787	12.238	2	2	Median	1.1306	1.0272	NaN	1	0	Median	1.1083	1.0052	32.318	6	3	Plateau	689460000	378000000	311450000	0	0	0	324040000	212150000	111890000	51937000	22268000	29669000	313480000	143590000	169890000	32480	841	30748	200991;200992;200993;200994;200995;200996;200997;200998;200999;201000;201001;201002	271787;271788;271789;271790;271791;271792;271793;271794;271795;271796;271797;271798;271799	271799			13	
LLVFTAAGVKPQGK	2	Unmodified	1427.85	0.85003529	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	5	5	3	3	60.043	56.083	2;3	0.00013	47968	160511_QHF_FH_JSI12i_3	98.531	77.578			0.61635	0.62862	30.067	8	8	Median	0.59967	0.4999	0.82289	2	2	Median	0.5323	0.61547	30.402	3	3	Plateau	0.80112	0.74797	18.676	2	2	Median	0.46182	0.4567	NaN	1	1	Median	910710000	543070000	367640000	205360000	126310000	79059000	255390000	151020000	104370000	227280000	116240000	111040000	222670000	149500000	73174000	32481	4257	30749	201003;201004;201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017;201018	271800;271801;271802;271803;271804;271805;271806;271807;271808;271809;271810;271811;271812;271813;271814;271815	271811			16	
LLVGNDDVHIIAR	0	Unmodified	1433.7991	0.79906235	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	57.593	56.754	2;3	4.4755E-10	50383	160511_QHF_FH_JSI11i_3	141.89	87.11			0.90373	0.88327	17.1	6	2	Median	1.0174	0.86789	NaN	1	1	Median	0.9835	1.1694	3.8634	2	0	Median	0.88483	0.82326	NaN	1	0	Median	0.7975	0.8514	7.682	2	1	Median	374980000	198280000	176700000	21456000	10246000	11210000	44471000	25507000	18965000	98059000	50615000	47444000	210990000	111910000	99078000	32482	3290	30750	201019;201020;201021;201022;201023;201024	271816;271817;271818;271819;271820;271821;271822;271823	271817			8	
LLVGSEDYGR	0	Unmodified	1107.556	0.55603811	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	37.875	36.677	2	0.020165	31136	160511_QHF_FH_JSI12i_2	41.876	25.995			0.9746	0.94529	2.4769	2	0	Median	1.0577	0.92888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89804	0.96199	NaN	1	0	Median	77969000	46836000	31133000	35970000	20901000	15069000	0	0	0	0	0	0	41999000	25936000	16063000	32483	2470	30751	201025;201026	271824	271824			1	
LLVGSEDYGRDLTGVQNLR	0	Unmodified	2104.0913	0.091281208	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.863	68.565	3	0.021926	59354	160511_QHF_FH_JSI12i_3	46.663	25.724			0.90013	0.90188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90013	0.90188	NaN	1	0	Median	42125000	18581000	23544000	0	0	0	0	0	0	0	0	0	42125000	18581000	23544000	32484	2470	30752	201027	271825	271825			0	
LLVGVDEK	1	Unmodified	871.50148	0.50148335	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							3	3	2	2	37.807	36.811	2	0.00063796	32092	160511_QHF_FH_JSI9i_2	101.64	48.089			1.1681	0.97804	35.477	10	5	Median	1.171	1.0168	29.091	3	1	Median	1.1958	1.4085	32.248	3	2	Median	0.87591	0.87454	5.3301	2	0	Median	0.94881	1.0672	73.041	2	2	Median	2935700000	1383000000	1552700000	571060000	227730000	343340000	778300000	391310000	387000000	903700000	427850000	475860000	682580000	336080000	346500000	32485	1798	30753	201028;201029;201030;201031;201032;201033;201034;201035;201036;201037	271826;271827;271828;271829;271830;271831;271832;271833	271831			8	
LLVHLKATR	1	Acetyl (K)	1091.6815	0.6815134	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		50.66	40.948	3	0.027355	22180	160513_QHF_FH_JSI11Kac_6	31.185	17.416			0.22682	0.21924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22682	0.21924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22767000	16755000	6011900	0	0	0	0	0	0	22767000	16755000	6011900	0	0	0	32486	2412	30754	201038	271834	271834			1	
LLVHMGLLK	1	Unmodified	1022.6311	0.63105773	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	3	4	4	4	64.595	60.185	2;3	2.7085E-05	50822	160511_QHF_FH_JSI10i_3	92.439	92.439			0.95742	0.90629	19.736	14	1	Median	1.143	0.90403	2.3056	3	0	Plateau	0.8984	1.0664	18.838	3	0	Median	1.0705	1.0202	32.684	4	1	Median	0.87534	0.88528	13.168	4	0	Median	1706300000	811820000	894500000	399220000	172540000	226680000	348920000	168820000	180100000	393120000	183170000	209950000	565050000	287280000	277770000	32487	1578	30755	201039;201040;201041;201042;201043;201044;201045;201046;201047;201048;201049;201050;201051;201052;201053	271835;271836;271837;271838;271839;271840;271841;271842;271843;271844;271845;271846;271847;271848;271849;271850;271851;271852;271853;271854;271855;271856;271857;271858;271859;271860;271861;271862;271863;271864;271865;271866;271867;271868;271869	271844			35	
LLVHMGLLK	1	Oxidation (M)	1038.626	0.62597236	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		50.276	40.564	3	0.017311	22036	160513_QHF_FH_JSI11Kac_6	43.083	37.302			0.54211	0.54864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54211	0.54864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7425100	4453700	2971400	0	0	0	0	0	0	7425100	4453700	2971400	0	0	0	32488	1578	30755	201054;201055	271870;271871	271870		1235	2	
LLVHMGLLKSEDK	2	Acetyl (K);Oxidation (M)	1539.8331	0.8330646	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	2	3	3	56.194	46.844	2;3	1.2191E-05	24638	160513_QHF_FH_JSI12Kac_6	95.631	84.048			1.2053	1.0567	25.712	8	0	Median	1.2174	1.0432	2.9651	2	0	Median	0.92334	1.0978	37.258	2	0	Median	0.78468	0.76549	NaN	1	0	Median	1.2167	1.2837	22.441	3	0	Median	322500000	156020000	166480000	89153000	37697000	51457000	68469000	31511000	36958000	31805000	13644000	18162000	133070000	73168000	59904000	32489	1578	30756	201056;201057;201058;201059;201060;201061;201062;201063;201064;201065;201066	271872;271873;271874;271875;271876;271877;271878;271879;271880;271881;271882	271881	1590	1235	10	
LLVHMGLLKSEDK	2	Acetyl (K)	1523.8381	0.83814998	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	73.202	64.63	2;3	2.259E-33	33853	160513_QHF_FH_JSI12Kac_6	189.13	149.83			1.0277	1.0775	8.4325	6	0	Median	1.0423	0.89931	NaN	1	0	Median	0.81683	0.98104	NaN	1	0	Median	1.1616	1.108	0.26236	2	0	Median	1.0112	1.0775	2.1846	2	0	Median	651380000	336060000	315320000	68827000	41975000	26851000	167570000	88841000	78726000	195800000	95693000	100100000	219190000	109550000	109640000	32490	1578	30756	201067;201068;201069;201070;201071;201072;201073;201074	271883;271884;271885;271886;271887;271888;271889;271890;271891	271886	1590		9	
LLVHQFSNK	1	Unmodified	1084.6029	0.60292873	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	1	3	2	3	27.301	25.337	2;3	0.00038523	20668	160511_QHF_FH_JSI9i_3	72.325	55.487			0.63513	0.60646	57.88	5	5	Median	NaN	NaN	NaN	0	0	Median	0.68098	0.78107	6.8722	2	2	Median	0.65648	0.60022	NaN	1	1	Median	0.35003	0.34377	80.28	2	2	Median	520700000	358360000	162330000	0	0	0	108610000	67152000	41455000	32026000	17312000	14714000	380060000	273900000	106160000	32491	3063	30757	201075;201076;201077;201078;201079;201080;201081;201082;201083	271892;271893;271894;271895;271896;271897;271898;271899;271900	271896			9	
LLVILATEQPLTAK	1	Unmodified	1508.9178	0.91778051	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			82.901	77.308	2	4.8207E-10	42833	160513_QHF_FH_JSI10Kac_6	124.1	95.705			0.66054	0.79059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66054	0.79059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42905000	24483000	18422000	0	0	0	42905000	24483000	18422000	0	0	0	0	0	0	32492	4651	30758	201084;201085	271901;271902	271902			2	
LLVITVATK	1	Unmodified	956.62702	0.62701821	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	15.8	0.4								1	4	1	1	1	2	69.097	59.793	2	0.0084542	32746	160513_QHF_FH_JSI10Kac_6	60.019	35.125			0.97469	1.0448	48.531	5	0	Median	1.1313	0.96654	NaN	1	0	Median	0.91323	1.0988	NaN	1	0	Median	0.84377	0.84211	NaN	1	0	Median	1.6137	1.7234	70.775	2	0	Median	113930000	57712000	56215000	21785000	11464000	10322000	26036000	16964000	9072300	37290000	16023000	21267000	28816000	13261000	15554000	32493	140	30759	201086;201087;201088;201089;201090	271903;271904	271904			2	
LLVLDPAQR	0	Unmodified	1023.6077	0.60767976	1717	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.411	53.034	2	0.0062509	45468	160511_QHF_FH_JSI12i_2	54.776	33.095			0.79951	0.90256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79951	0.90256	NaN	1	0	Median	34572000	18520000	16052000	0	0	0	0	0	0	0	0	0	34572000	18520000	16052000	32494	1717	30760	201091	271905	271905			1	
LLVLEDENANVDEVELKPDTLIK	2	Unmodified	2608.3847	0.38472884	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.535	1	5	1							1	2	1	3	92.535	92.138	3	7.8809E-17	79840	160511_QHF_FH_JSI12i_3	133.26	122.42			0.94651	0.97993	24.276	7	4	Median	1.657	1.4518	NaN	1	1	Median	0.73074	0.8593	7.0883	2	1	Median	0.94651	0.97993	NaN	1	0	Median	0.99995	1.0964	28.209	3	2	Median	185050000	103110000	81941000	28215000	10761000	17455000	45267000	29779000	15488000	35449000	23236000	12213000	76120000	39335000	36785000	32495	2453	30761	201092;201093;201094;201095;201096;201097;201098	271906;271907;271908;271909;271910;271911;271912;271913;271914;271915;271916;271917	271917			12	
LLVLSALAEK	1	Unmodified	1055.659	0.65904662	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	76.047	75.77	2	0.0029104	65688	160511_QHF_FH_JSI12i_3	71.614	48.185			1.0274	1.0319	69.832	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0274	1.0319	69.832	2	2	Median	116930000	56740000	60195000	0	0	0	0	0	0	0	0	0	116930000	56740000	60195000	32496	2397	30762	201099;201100	271918;271919	271918			2	
LLVLYSGEDDELLQR	0	Unmodified	1761.9149	0.91487997	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	1	3	84.274	83.666	2	4.7212E-10	72200	160511_QHF_FH_JSI12i_2	150.94	136.78			0.86621	0.93911	11.652	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89345	1.0552	15.929	2	1	Median	0.89808	0.93545	NaN	1	0	Median	0.83547	0.92912	NaN	1	0	Median	122850000	63428000	59422000	0	0	0	51972000	27450000	24522000	36792000	17968000	18825000	34085000	18010000	16075000	32497	4704	30763	201101;201102;201103;201104;201105;201106;201107	271920;271921;271922;271923;271924;271925;271926;271927;271928;271929	271920			10	
LLVMLLAHGSK	1	Unmodified	1180.7002	0.70019993	4190	Q96P47	AGAP3	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	3	1	3	2	72.649	63.647	2;3	0.00016398	33695	160513_QHF_FH_JSI9Kac_6	85.288	75.601			2.066	1.8999	85.572	7	7	Median	1.3569	1.1798	75.854	2	2	Median	3.1581	3.6565	NaN	1	1	Median	1.1775	1.0946	77.983	2	2	Median	1.0838	1.1535	142.95	2	2	Median	303850000	122340000	181510000	71054000	28454000	42600000	51822000	10562000	41260000	120670000	53388000	67283000	60307000	29941000	30366000	32498	4190	30764	201108;201109;201110;201111;201112;201113;201114;201115;201116	271930;271931;271932;271933;271934;271935;271936;271937;271938	271934			9	
LLVPAAEGEDSLK	1	Unmodified	1340.7187	0.71874635	4200	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		56.088	55.435	2	0.00031516	49200	160511_QHF_FH_JSI9i_1	79.659	57.573			1.0216	0.85023	13.587	3	0	Median	1.029	0.85023	NaN	1	0	Median	0.64651	0.76574	NaN	1	0	Median	1.0216	1.0026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	290150000	152890000	137270000	94058000	43531000	50527000	95491000	55642000	39849000	100600000	53713000	46890000	0	0	0	32499	4200	30765	201117;201118;201119	271939	271939			1	
LLVPEIDEVMRK	1	Unmodified	1440.801	0.80103619	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	76.365	76.227	3	0.016543	66231	160511_QHF_FH_JSI12i_3	32.734	20.758			1.2979	1.277	10.155	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3052	1.1885	NaN	1	0	Median	1.2906	1.3721	NaN	1	0	Median	79933000	36312000	43621000	0	0	0	0	0	0	32583000	14415000	18169000	47349000	21897000	25452000	32500	557	30766	201120;201121	271940	271940			1	
LLVPILLPEK	1	Unmodified	1133.7424	0.74238232	508	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	96.882	96.636	2	0.0011375	84722	160511_QHF_FH_JSI11i_2	78.334	69.472			0.70693	0.60515	31.306	4	4	Linear	1.4845	1.3024	NaN	1	1	Median	0.55766	0.67874	NaN	1	1	Median	0.65833	0.66299	NaN	1	1	Median	0.75912	0.85215	NaN	1	1	Median	76951000	37525000	39426000	18206000	6205100	12001000	18666000	11250000	7416300	24700000	12972000	11729000	15379000	7098700	8280400	32501	508	30767	201122;201123;201124;201125;201126;201127;201128	271941;271942;271943;271944;271945;271946;271947	271945			7	
LLVPLVPDLQDVAQLR	0	Unmodified	1788.0509	0.050919944	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.03	101.92	3	6.7796E-08	87817	160511_QHF_FH_JSI12i_2	135.81	128.52			0.92946	0.93154	9.553	4	0	Median	1.1174	0.95795	NaN	1	0	Median	0.70149	0.85179	NaN	1	0	Median	1.0603	1.0666	NaN	1	0	Median	0.81477	0.90586	NaN	1	0	Median	730220000	380410000	349810000	178250000	80981000	97272000	140660000	83031000	57633000	200680000	108380000	92305000	210620000	108020000	102600000	32502	4399	30768	201129;201130;201131;201132	271948;271949;271950;271951;271952;271953	271948			6	
LLVPSLMK	1	Unmodified	899.55141	0.55141043	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	67.546	66.753	2	0.0014792	57603	160511_QHF_FH_JSI12i_3	88.942	82.488			1.2189	1.1371	13.469	7	2	Median	1.2463	1.0604	1.2557	2	1	Median	0.85906	1.0044	17.546	2	0	Median	1.2436	1.2273	10.351	2	1	Median	1.289	1.2935	NaN	1	0	Median	321270000	162400000	158870000	62919000	29264000	33655000	86246000	53541000	32706000	93522000	47496000	46026000	78579000	32099000	46481000	32503	647	30769	201133;201134;201135;201136;201137;201138;201139	271954;271955;271956;271957;271958;271959;271960;271961	271961			8	
LLVPTQFVGAIIGK	1	Unmodified	1454.8861	0.88608645	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	3	4	3	3	99.411	96.571	2;3	2.4779E-10	82510	160511_QHF_FH_JSI9i_3	105.65	0			0.89351	0.93204	11.785	12	12	Median	1.1798	0.9572	1.0164	2	2	Median	0.76687	0.93204	13.4	4	4	Median	0.92363	0.87298	15.447	3	3	Median	0.86438	0.91343	12.297	3	3	Median	7802400000	4181400000	3621000000	1600400000	761330000	839100000	1414400000	740450000	673940000	1858500000	940380000	918140000	2929000000	1739300000	1189800000	32504	132	30770	201140;201141;201142;201143;201144;201145;201146;201147;201148;201149;201150;201151;201152	271962;271963;271964;271965;271966;271967;271968;271969;271970;271971;271972;271973;271974	271968			13	
LLVPTQYVGAIIGK	1	Unmodified	1470.881	0.88100107	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.43	2	5	8						2	3	3	6	5	97.674	96.116	2;3	8.0937E-08	87812	160511_QHF_FH_JSI11i_3	91.858	82.808			0.8859	0.86929	17.031	13	13	Median	1.0313	0.88465	14.51	3	3	Median	0.76804	0.88387	9.8343	3	3	Median	0.90954	0.8518	9.9506	3	3	Plateau	0.8903	0.93345	25.397	4	4	Median	1197800000	640000000	557850000	157640000	73715000	83926000	263690000	142280000	121410000	288900000	154510000	134390000	487620000	269500000	218120000	32505	5153	30771	201153;201154;201155;201156;201157;201158;201159;201160;201161;201162;201163;201164;201165;201166;201167;201168;201169	271975;271976;271977;271978;271979;271980;271981;271982;271983;271984;271985;271986;271987;271988;271989;271990;271991;271992	271976			18	
LLVPYLMEAIR	0	Unmodified	1316.7526	0.75262943	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	101.32	101.22	2	2.8966E-09	90312	160511_QHF_FH_JSI11i_3	133.57	82.696			0.8765	0.82326	45.555	7	0	Median	1.3539	1.1047	NaN	1	0	Median	0.75927	0.90909	40.896	2	0	Median	0.6121	0.60315	43.997	2	0	Median	0.64717	0.69841	74.875	2	0	Median	6769500000	3870400000	2899100000	351940000	165280000	186660000	1728800000	986140000	742690000	1755000000	1192000000	562980000	2933700000	1527000000	1406700000	32506	2770	30772	201170;201171;201172;201173;201174;201175;201176	271993;271994;271995;271996;271997;271998;271999;272000;272001;272002;272003;272004	271994			12	
LLVPYLMEAIR	0	Oxidation (M)	1332.7475	0.74754405	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By matching	By MS/MS			3	0			2							1	1			88.031	86.875	2	0.051197	72674	160511_QHF_FH_JSI10i_3	39.022	16.936			1.3995	1.3739	11.134	2	0	Median	1.7877	1.4864	NaN	1	0	Median	1.0956	1.2699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29123000	10865000	18258000	16371000	5638600	10732000	12751000	5226400	7525100	0	0	0	0	0	0	32507	2770	30772	201177;201178	272005	272005			1	
LLVQALQAFR	0	Unmodified	1157.6921	0.69207809	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.51		1	4					1	4	3	3	2	2	78.331	73.588	2	2.5629E-17	39734	160513_QHF_FH_JSI10Kac_6	164.72	129.92			0.96781	0.92652	21.106	10	0	Median	1.1297	0.92105	31.296	3	0	Plateau	0.85548	0.88173	10.163	3	0	Plateau	1.0575	0.98903	0.16012	2	0	Median	0.99669	1.0402	21.07	2	0	Median	1413200000	731160000	682000000	348360000	174370000	174000000	673500000	362940000	310570000	240960000	127320000	113640000	150340000	66533000	83804000	32508	950	30773	201179;201180;201181;201182;201183;201184;201185;201186;201187;201188	272006;272007;272008;272009;272010;272011;272012;272013;272014;272015;272016;272017;272018;272019	272019			14	
LLVQHEINTLR	0	Unmodified	1334.767	0.76703394	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	2	1	2	4	43.003	41.186	2;3	1.3814E-06	36079	160511_QHF_FH_JSI11i_3	92.247	57.473			0.83374	0.92211	30.247	7	2	Median	1.845	1.5226	NaN	1	0	Median	0.75509	0.93951	NaN	1	0	Median	0.89519	0.83522	13.997	2	0	Median	0.83374	0.87512	37.663	3	2	Median	1379900000	764870000	615040000	32038000	9904200	22134000	27766000	15723000	12043000	559760000	278460000	281300000	760340000	460770000	299570000	32509	1685;31;191	30774	201189;201190;201191;201192;201193;201194;201195;201196;201197	272020;272021;272022;272023;272024;272025;272026;272027;272028	272020			8	
LLVSASQDGK	1	Unmodified	1016.5502	0.55022446	2032;2030;4830;1101	P62873;P62879;Q9HAV0;P16520	GNB1;GNB2;GNB4;GNB3	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.24	4	5	4			2	3			3	5	5	5	26.253	23.131	2	7.3746E-06	20175	160511_QHF_FH_JSI10i_2	138.98	101.95			0.94743	0.93931	28.067	17	4	Median	0.76605	0.62071	23.854	3	0	Plateau	0.95303	1.1261	29.168	4	1	Median	0.94743	0.93931	23.134	5	2	Median	0.87554	0.95776	30.944	5	1	Median	6463600000	3528900000	2934700000	1430700000	851070000	579610000	1247600000	658690000	588910000	1689300000	735170000	954080000	2096000000	1283900000	812070000	32510	2030;2032;4830;1101	30775	201198;201199;201200;201201;201202;201203;201204;201205;201206;201207;201208;201209;201210;201211;201212;201213;201214;201215	272029;272030;272031;272032;272033;272034;272035;272036;272037;272038;272039;272040;272041;272042;272043;272044;272045;272046;272047;272048;272049;272050;272051;272052;272053	272051			25	
LLVSGFWGVAR	0	Unmodified	1203.6764	0.67642802	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.836	74.592	2	5.1966E-07	42114	160513_QHF_FH_JSI10Kac_6	108.74	91.503			1.0775	1.078	5.7158	4	0	Median	1.3763	1.1723	NaN	1	0	Median	0.8514	1.0217	NaN	1	0	Median	1.1125	1.0697	NaN	1	0	Median	1.0436	1.0864	NaN	1	0	Median	939720000	462150000	477580000	225590000	92195000	133400000	482320000	255680000	226640000	119280000	57480000	61803000	112530000	56794000	55734000	32511	5242	30776	201216;201217;201218;201219	272054;272055;272056;272057;272058;272059;272060	272059			7	
LLVSGSSDSTLK	1	Unmodified	1205.6503	0.65033243	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			2	2	2	1	38.412	36.133	2	0.00062795	32521	160511_QHF_FH_JSI11i_1	82.029	62.242			1.034	1.0464	14.905	6	4	Median	1.0134	0.8845	23.033	2	2	Median	0.91141	1.0518	NaN	1	0	Median	1.1374	1.1164	3.454	2	1	Median	0.96028	1.0113	NaN	1	1	Median	273300000	138600000	134690000	36847000	16759000	20088000	84711000	47737000	36974000	89508000	46159000	43349000	62230000	27947000	34283000	32512	5054	30777	201220;201221;201222;201223;201224;201225;201226	272061;272062;272063;272064;272065;272066;272067;272068	272061			8	
LLVSNLDFGVSDADIQELFAEFGTLK	1	Unmodified	2840.4484	0.44839173	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.88	93.432	3	3.2527E-16	56083	160513_QHF_FH_JSI10Kac_6	159.66	141.57			0.88252	0.88618	28.146	2	2	Median	0.8506	0.72625	NaN	1	1	Median	0.91564	1.0813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	304050000	122950000	181100000	102170000	41652000	60520000	201880000	81298000	120580000	0	0	0	0	0	0	32513	3337	30778	201227;201228	272069;272070	272070			2	
LLVSQGASIYIENK	1	Unmodified	1533.8403	0.84025847	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.678	62.76	2	0.00016458	53875	160511_QHF_FH_JSI12i_2	95.094	71.005			0.97244	1.0195	14.006	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1291	1.1257	NaN	1	0	Median	0.83754	0.92338	NaN	1	0	Median	59380000	33145000	26235000	0	0	0	0	0	0	25731000	14378000	11353000	33649000	18767000	14882000	32514	573	30779	201229;201230	272071;272072	272071			2	
LLVSQGASIYIENKEEK	2	Unmodified	1920.0204	0.020407676	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			63.446	55.141	3	0.0073792	30411	160513_QHF_FH_JSI10Kac_6	47.09	30.012			0.54254	0.62975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54254	0.62975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16126000	11129000	4997200	0	0	0	16126000	11129000	4997200	0	0	0	0	0	0	32515	573	30780	201231	272073	272073			1	
LLVTDMSDAEQYR	0	Unmodified	1539.7239	0.72390808	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.42	4	4	3				2			4	4	2	3	60.978	58.417	2	1.3475E-30	53413	160511_QHF_FH_JSI12i_1	188.28	177.52			0.96359	1.0646	7.8737	12	1	Median	1.313	1.0868	5.3246	3	1	Plateau	0.90291	1.1011	10.883	4	0	Median	1.0137	1.0098	6.4519	2	0	Median	0.94969	1.0234	2.4294	3	0	Median	3711600000	1846000000	1865600000	896810000	406550000	490250000	905790000	463220000	442570000	1066600000	540830000	525740000	842450000	435430000	407020000	32516	220	30781	201232;201233;201234;201235;201236;201237;201238;201239;201240;201241;201242;201243;201244	272074;272075;272076;272077;272078;272079;272080;272081;272082;272083;272084;272085;272086;272087;272088;272089;272090;272091;272092	272079			19	
LLVTDMSDAEQYR	0	Oxidation (M)	1555.7188	0.7188227	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	44.741	41.585	2	1.1956E-05	37648	160511_QHF_FH_JSI10i_1	87.298	61.36			0.966	1.0055	8.0789	4	3	Median	1.2487	1.0149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92362	0.86606	NaN	1	1	Median	0.95713	1.015	2.6427	2	1	Median	144900000	60726000	84170000	35220000	12338000	22882000	0	0	0	49651000	22736000	26914000	60026000	25652000	34374000	32517	220	30781	201245;201246;201247;201248;201249	272093;272094;272095;272096;272097	272095		93	5	
LLVVDPETDEQLQK	1	Unmodified	1625.8512	0.85121708	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				2	4	4	4	65.403	61.693	2;3	6.1038E-40	55989	160511_QHF_FH_JSI12i_1	201.48	174.15			1.0004	0.96718	21.161	14	3	Median	1.1004	0.90411	1.484	2	0	Median	0.80046	0.95134	35.466	4	1	Median	1.05	1.0131	22.468	4	2	Median	0.98456	1.0398	6.513	4	0	Median	2904700000	1570600000	1334100000	728350000	351340000	377010000	619780000	372370000	247420000	896140000	456450000	439690000	660440000	390470000	269970000	32518	198	30782	201250;201251;201252;201253;201254;201255;201256;201257;201258;201259;201260;201261;201262;201263	272098;272099;272100;272101;272102;272103;272104;272105;272106;272107;272108;272109;272110;272111;272112;272113;272114;272115;272116;272117;272118;272119;272120;272121;272122	272104			25	
LLVVDPK	1	Unmodified	782.49019	0.49019038	757	O96017	CHEK2	Serine/threonine-protein kinase Chk2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									2	1	1	39.104	38.355	2	0.038258	34434	160511_QHF_FH_JSI11i_1	48.242	22.133			0.5698	0.67037	32.085	4	1	Median	NaN	NaN	NaN	0	0	Median	0.5698	0.67037	0.8404	2	0	Median	1.2236	1.1754	NaN	1	0	Median	0.51736	0.56254	NaN	1	1	Median	119980000	72525000	47456000	0	0	0	60385000	36460000	23924000	20170000	11159000	9011400	39426000	24906000	14521000	32519	757	30783	201264;201265;201266;201267	272123;272124	272123			2	
LLVVDRETDEFFK	1	Unmodified	1609.8352	0.83517309	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	4	3	4	71.387	70.67	2;3	3.5749E-05	62269	160511_QHF_FH_JSI9i_2	97.86	79.031			1.1082	1.043	18.879	13	4	Median	1.3837	1.1921	26.515	2	1	Median	1.0011	1.2182	26.942	4	2	Median	1.1546	1.1267	19.516	3	0	Median	0.98354	1.0244	7.4487	4	1	Median	2199400000	1044100000	1155300000	137830000	67683000	70145000	321690000	160160000	161530000	831290000	416710000	414580000	908590000	399530000	509060000	32520	198	30784	201268;201269;201270;201271;201272;201273;201274;201275;201276;201277;201278;201279;201280	272125;272126;272127;272128;272129;272130;272131;272132;272133;272134;272135;272136;272137;272138;272139;272140;272141;272142;272143;272144;272145;272146;272147;272148;272149;272150;272151	272135			27	
LLVVDRETDEFFKK	2	Unmodified	1737.9301	0.93013611	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		63.163	63.163	4	0.018723	56117	160511_QHF_FH_JSI11i_3	42.317	26.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33319000	0	33319000	0	0	0	0	0	0	33319000	0	33319000	0	0	0	32521	198	30785	201281	272152	272152			1	
LLVVLSPNYVLQGTQALLELK	1	Unmodified	2310.3563	0.35626967	4902	Q9NPH3	IL1RAP	Interleukin-1 receptor accessory protein	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		99.645	90.359	3	0.0084183	51831	160513_QHF_FH_JSI11Kac_6	36.454	28.064			1.2275	1.0998	26.631	2	0	Median	1.0467	0.91105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4396	1.3277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85028000	37993000	47034000	29856000	14259000	15597000	0	0	0	55172000	23735000	31437000	0	0	0	32522	4902	30786	201282;201283	272153	272153			1	
LLVVSESSAAQEQDK	1	Unmodified	1602.8101	0.81008055	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.67	39.238	2	0.00032799	35683	160511_QHF_FH_JSI12i_1	99.5	63.959			0.60834	0.62652	35.731	3	2	Median	NaN	NaN	NaN	0	0	Median	0.30026	0.34083	NaN	1	1	Median	0.63272	0.62652	NaN	1	1	Median	0.60834	0.63898	NaN	1	0	Median	81078000	52025000	29053000	0	0	0	23796000	19138000	4657800	26992000	15759000	11233000	30291000	17128000	13162000	32523	2309	30787	201284;201285;201286	272154;272155;272156	272155			3	
LLVVTDPR	0	Unmodified	911.54402	0.54401687	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.38	4	4	4			3	3	4	4	5	7	7	7	45.97	40.275	2	1.1372E-06	22472	160513_QHF_FH_JSI10Kac_4	135.35	85.992			0.94297	0.99945	8.195	26	0	Median	1.2767	1.0528	8.9201	5	0	Median	0.83081	0.99555	5.3454	7	0	Median	0.99369	0.97482	7.1353	7	0	Median	0.90065	0.95415	9.1688	7	0	Median	16645000000	8402500000	8242400000	3688700000	1601300000	2087400000	4071600000	2157600000	1914000000	5505800000	2833300000	2672500000	3378800000	1810200000	1568500000	32524	917	30788	201287;201288;201289;201290;201291;201292;201293;201294;201295;201296;201297;201298;201299;201300;201301;201302;201303;201304;201305;201306;201307;201308;201309;201310;201311;201312	272157;272158;272159;272160;272161;272162;272163;272164;272165;272166;272167;272168;272169;272170;272171;272172;272173;272174;272175;272176;272177;272178;272179;272180;272181;272182;272183;272184;272185;272186;272187;272188;272189;272190;272191;272192;272193;272194;272195;272196;272197;272198;272199;272200;272201;272202;272203;272204;272205;272206;272207;272208	272173			52	
LLVVWNNQNK	1	Unmodified	1226.6772	0.6771563	3929	Q93063	EXT2	Exostosin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		64.65	54.984	2	1.1156E-10	29772	160513_QHF_FH_JSI11Kac_6	141.78	80.809			1.5204	1.5001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5204	1.5001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12873000	2286600	10586000	0	0	0	0	0	0	12873000	2286600	10586000	0	0	0	32525	3929	30789	201313;201314	272209;272210	272209			2	
LLVVYPWTQR	0	Unmodified	1273.7183	0.71829284	72	CON__Q3SX09;CON__P02070;P68871;P02042;P69892;P69891;P02100	HBB;HBD;HBG2;HBG1;HBE1	Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.6	6.32		1	6					4	4	4	4	3	4	80.824	75.118	2	1.6579E-10	39606	160513_QHF_FH_JSI11Kac_6	138.1	96.118		+	0.84917	0.87125	19.14	14	10	Median	0.89692	0.75936	15.22	4	3	Median	0.7386	0.86894	19.007	4	3	Median	0.95498	0.91583	16.982	3	3	Median	0.93985	0.99536	21.839	3	1	Median	8607300000	4561600000	4045700000	1990400000	1023100000	967270000	3018200000	1732000000	1286100000	2402800000	1132700000	1270100000	1195900000	673690000	522170000	32526	72	30790	201315;201316;201317;201318;201319;201320;201321;201322;201323;201324;201325;201326;201327;201328;201329	272211;272212;272213;272214;272215;272216;272217;272218;272219;272220;272221;272222;272223;272224;272225;272226;272227	272217			17	
LLVYEALEYAK	1	Unmodified	1310.7122	0.71220441	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		82.38	81.74	2	0.0067758	72041	160511_QHF_FH_JSI11i_2	51.762	41.01			0.67803	0.6896	16.368	3	1	Plateau	1.0779	0.92269	NaN	1	1	Median	0.58596	0.71269	NaN	1	0	Median	0.67803	0.68126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160030000	80072000	79958000	28754000	11556000	17199000	62558000	33045000	29513000	68717000	35470000	33246000	0	0	0	32527	4024	30791	201330;201331;201332	272228;272229	272229			2	
LLWANKPDK	2	Unmodified	1083.6077	0.60767975	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	31.419	30.704	2;3	0.0040817	26478	160511_QHF_FH_JSI11i_3	100.02	47.614			1.1732	1.2864	24.531	4	4	Median	2.0619	1.6824	NaN	1	1	Median	1.0671	1.2475	NaN	1	1	Median	0.99072	0.92675	NaN	1	1	Median	1.2897	1.3264	NaN	1	1	Median	1130700000	668590000	462140000	351810000	179990000	171820000	291830000	140020000	151810000	104740000	69287000	35449000	382350000	279290000	103060000	32528	2448	30792	201333;201334;201335;201336	272230;272231;272232;272233	272230			4	
LLWHPVMNGDK	1	Unmodified	1308.6649	0.66487706	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	49.928	49.18	2;3	3.6132E-07	41975	160511_QHF_FH_JSI12i_3	118.71	97.841			0.78533	0.75436	15.823	7	3	Median	1.1541	0.93605	9.5938	2	0	Median	0.64289	0.75436	NaN	1	1	Median	0.75352	0.70814	5.1062	2	2	Median	0.7598	0.77387	23.257	2	0	Median	1121500000	591230000	530240000	284470000	136940000	147540000	44788000	26464000	18324000	331170000	172020000	159140000	461040000	255800000	205230000	32529	5161	30793	201337;201338;201339;201340;201341;201342;201343	272234;272235;272236;272237;272238;272239;272240;272241;272242;272243	272243			10	
LLWLLYDLGHLER	0	Unmodified	1639.9086	0.9086128	113	O00255	MEN1	Menin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									4		2	2		96.155	88.594	3	9.6423E-08	51870	160513_QHF_FH_JSI10Kac_6	138.42	120.01			0.625	0.60013	243.52	4	4	Median	NaN	NaN	NaN	0	0	Median	0.5222	0.62461	347.07	2	2	Median	0.625	0.60013	239.64	2	2	Median	NaN	NaN	NaN	0	0	Median	448530000	250890000	197640000	0	0	0	279820000	167950000	111870000	168710000	82936000	85771000	0	0	0	32530	113	30794	201344;201345;201346;201347	272244;272245;272246;272247	272246			4	
LLWTLESLVTGR	0	Unmodified	1386.7871	0.78710068	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.6	5.2			4						1	1	2	1	1	99.929	98.721	2	3.324E-12	82456	160511_QHF_FH_JSI9i_3	155.06	101.09			1.0942	1.1291	17.917	5	1	Median	1.8096	1.4693	NaN	1	0	Median	1.0806	1.2599	16.003	2	1	Median	1.0262	0.95246	NaN	1	0	Median	1.0942	1.1291	NaN	1	0	Median	895610000	451930000	443670000	77960000	31933000	46028000	281150000	148070000	133090000	222750000	91468000	131280000	313740000	180460000	133280000	32531	3479	30795	201348;201349;201350;201351;201352	272248;272249;272250;272251;272252	272250			5	
LLWVYVIR	0	Unmodified	1060.6433	0.64333698	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.327	79.66	2	0.00020859	44613	160513_QHF_FH_JSI10Kac_6	118.42	68.302			0.57539	0.68264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57539	0.68264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127430000	71332000	56095000	0	0	0	127430000	71332000	56095000	0	0	0	0	0	0	32532	625	30796	201353	272253	272253			1	
LLYDEYMYYLIEHR	0	Unmodified	1919.9128	0.91277148	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	89.084	80.792	3	0.00028015	46616	160513_QHF_FH_JSI10Kac_6	72.175	68.004			1.1009	1.0935	31.525	4	0	Median	1.3555	1.1536	NaN	1	0	Median	1.161	1.381	NaN	1	0	Median	1.0439	1.0364	NaN	1	0	Median	0.61866	0.65892	NaN	1	0	Median	200850000	104770000	96080000	33045000	14370000	18675000	89957000	45285000	44672000	37873000	17931000	19942000	39979000	27188000	12791000	32533	1213	30797	201354;201355;201356;201357	272254;272255;272256	272256			2	
LLYDLADQLHAAVGASR	0	Unmodified	1811.953	0.95299681	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	4	3	81.658	81.095	2;3	3.9562E-81	70473	160511_QHF_FH_JSI12i_3	249.62	215.24			1.0733	1.1065	24.872	12	2	Median	1.207	1.0665	40.587	2	1	Median	0.71394	0.88592	27.036	3	1	Plateau	1.0318	1.0023	23.654	4	0	Median	1.1884	1.1846	23.986	3	0	Median	3239000000	1429900000	1809100000	332000000	191330000	140680000	518910000	240680000	278230000	1238300000	492790000	745550000	1149700000	505110000	644640000	32534	1041	30798	201358;201359;201360;201361;201362;201363;201364;201365;201366;201367;201368;201369	272257;272258;272259;272260;272261;272262;272263;272264;272265;272266;272267;272268;272269;272270;272271	272269			14	
LLYDTFSAFGVILQTPK	1	Unmodified	1912.0346	0.034601177	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	6.24		3							8	3	2	4	2	97.945	91.804	2;3	3.6703E-295	49695	160513_QHF_FH_JSI9Kac_6	361.51	325.86			0.9087	0.90121	13.069	10	0	Median	1.0932	0.92993	4.3929	2	0	Median	0.75762	0.90972	3.7699	2	0	Median	0.85271	0.8024	16.065	4	0	Linear	0.75089	0.79304	7.8221	2	0	Median	4159500000	2089600000	2069900000	1082600000	512680000	569950000	602190000	341370000	260820000	1726100000	837450000	888610000	748610000	398070000	350540000	32535	2671	30799	201370;201371;201372;201373;201374;201375;201376;201377;201378;201379;201380	272272;272273;272274;272275;272276;272277;272278;272279;272280;272281;272282;272283;272284;272285;272286;272287;272288;272289;272290	272282			19	
LLYEALVDCKK	2	Unmodified	1350.7217	0.72172323	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	54.029	53.87	2;3	0.00080156	46187	160511_QHF_FH_JSI12i_3	87.258	65.172			0.6697	0.6542	41.865	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51495	0.48657	NaN	1	1	Median	0.87097	0.87958	NaN	1	1	Median	156220000	71073000	85152000	0	0	0	0	0	0	65591000	31804000	33786000	90634000	39268000	51366000	32536	3222	30800	201381;201382;201383	272291;272292;272293	272292			3	
LLYEANLPENFR	0	Unmodified	1477.7565	0.75652884	3464	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.596	70.304	2	1.4732E-05	60678	160511_QHF_FH_JSI12i_2	114.4	64.361			0.88222	0.96576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88222	0.96576	NaN	1	0	Median	60795000	34009000	26786000	0	0	0	0	0	0	0	0	0	60795000	34009000	26786000	32537	3464	30801	201384	272294;272295	272295			2	
LLYFMMFLK	1	Unmodified	1204.6388	0.63884523	3524	Q8N3Y7	SDR16C5	Epidermal retinol dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	84.777	76.914	2	0.00050934	52941	160513_QHF_FH_JSI10Kac_6	91.906	46.825			0.3246	0.37737	77.051	2	1	Median	NaN	NaN	NaN	0	0	Median	0.3246	0.37737	77.051	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55704000	37091000	18613000	0	0	0	47216000	37091000	10125000	0	0	0	8488300	0	8488300	32538	3524	30802	201385;201386;201387	272296;272297;272298	272298			3	
LLYGFLIK	1	Unmodified	965.59499	0.5949898	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.92		4	7						4	4	3	4	4	83.84	81.175	2	0.0019787	40632	160513_QHF_FH_JSI9Kac_6	94.163	60.806			0.90271	0.90294	55.834	15	10	Median	0.85336	0.69813	62.593	4	3	Median	0.84093	0.99532	19.197	3	1	Median	0.93306	0.89542	71.679	4	3	Median	0.98108	0.99914	66.33	4	3	Median	5947000000	2952300000	2994700000	1533700000	726580000	807150000	1527900000	938770000	589160000	1740700000	872760000	867950000	1144600000	414210000	730440000	32539	3840	30803	201388;201389;201390;201391;201392;201393;201394;201395;201396;201397;201398;201399;201400;201401;201402	272299;272300;272301;272302;272303;272304;272305;272306;272307;272308;272309;272310;272311;272312;272313;272314;272315;272316;272317;272318	272312			20	
LLYGMALVR	0	Oxidation (M)	1050.5896	0.58958685	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.8	0.4								1	4	2	1	1	1	61.025	51.465	2	0.034146	27393	160513_QHF_FH_JSI9Kac_6	40.573	32.341			0.99215	0.97581	14.354	5	0	Median	1.2219	1.0335	23.439	2	0	Median	0.94563	1.1365	NaN	1	0	Median	0.99215	0.97581	NaN	1	0	Median	0.82284	0.90773	NaN	1	0	Median	87257000	40059000	47198000	29143000	12573000	16569000	20076000	10936000	9139300	24240000	10371000	13870000	13798000	6178300	7619700	32540	5639	30804	201403;201404;201405;201406;201407	272319;272320	272320			2	
LLYLLQQETSSTELK	1	Unmodified	1764.9509	0.95093113	3399	Q8IUR7	ARMC8	Armadillo repeat-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.352	78.539	2	1.384E-06	69273	160511_QHF_FH_JSI9i_2	145.91	102.37			2.9416	2.8524	10.985	2	2	Median	3.6145	3.0828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.394	2.6392	NaN	1	1	Median	37159000	1323200	35836000	10587000	422460	10165000	6685400	0	6685400	11341000	0	11341000	8545600	900750	7644900	32541	3399	30805	201408;201409;201410;201411	272321;272322;272323;272324	272322			4	
LLYLWTSSHTNSVPGTVTK	1	Unmodified	2103.1001	0.10005498	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	2	1	74.079	68.405	3	5.9706E-45	37284	160513_QHF_FH_JSI10Kac_6	145.88	126.33			0.80434	0.85434	70.906	8	4	Median	2.0796	1.7454	94.669	3	2	Plateau	0.53484	0.63146	46.616	2	0	Median	1.0709	0.99842	25.904	2	1	Median	2.251	2.3961	NaN	1	1	Median	848230000	390750000	457480000	299810000	115190000	184620000	296530000	174750000	121790000	186340000	83047000	103290000	65553000	17770000	47783000	32542	135	30806	201412;201413;201414;201415;201416;201417;201418;201419	272325;272326;272327;272328;272329;272330;272331;272332;272333	272333			9	
LLYMHMLGYPAHFGQLECLK	1	Unmodified	2420.1843	0.18433543	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	1	2	4	4	87.321	82.102	3;4	2.7481E-35	42915	160513_QHF_FH_JSI10Kac_6	173.27	157.85			1.0529	0.99867	20.066	11	3	Median	1.3547	1.1494	NaN	1	0	Median	0.73188	0.85906	5.6925	2	0	Median	1.1977	1.1423	10.573	4	1	Median	0.8958	0.94715	29.07	4	2	Median	3374800000	1591300000	1783500000	466920000	139020000	327900000	1182200000	625560000	556680000	815270000	344660000	470610000	910340000	482050000	428300000	32543	369	30807	201420;201421;201422;201423;201424;201425;201426;201427;201428;201429;201430	272334;272335;272336;272337;272338;272339;272340;272341;272342;272343;272344;272345	272343			11	
LLYMHMLGYPAHFGQLECLK	1	Oxidation (M)	2436.1793	0.17925005	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	80.678	71.235	4	0.00019273	37681	160513_QHF_FH_JSI12Kac_6	82.586	72.603			1.3478	1.4426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3478	1.4426	NaN	1	1	Median	86433000	36843000	49590000	0	0	0	0	0	0	0	0	0	86433000	36843000	49590000	32544	369	30807	201431	272346	272346		144	1	
LLYMLAEALPVSHGAHFSGDVSK	1	Unmodified	2441.2413	0.24131626	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			10								3	4	3	88.241	87.837	3;4	1.8712E-11	75874	160511_QHF_FH_JSI12i_3	110.67	96.356			2.8158	2.9624	138.26	9	9	Median	NaN	NaN	NaN	0	0	Median	2.8158	3.1386	94.073	3	3	Plateau	3.1555	2.9624	124.12	3	3	Median	5.4277	5.7406	223.16	3	3	Median	347030000	158780000	188250000	0	0	0	52558000	27427000	25131000	141970000	55665000	86304000	152500000	75687000	76812000	32545	344	30808	201432;201433;201434;201435;201436;201437;201438;201439;201440;201441	272347;272348;272349;272350;272351;272352;272353;272354;272355;272356;272357;272358;272359	272358			13	
LLYNNVSNFGR	0	Unmodified	1295.6622	0.66223452	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	3	3	2	55.161	51.395	2	1.2645E-29	43027	160511_QHF_FH_JSI10i_3	189.13	167.05			1.0151	0.98828	13.404	12	1	Median	1.3947	1.1425	17.451	4	0	Median	0.82714	0.96561	2.9713	3	0	Median	1.015	1.0274	9.7832	3	1	Plateau	0.83077	0.87796	7.1797	2	0	Median	8159300000	4175500000	3983800000	2099200000	839830000	1259400000	2361500000	1240400000	1121200000	1941000000	1027300000	913720000	1757500000	1068000000	689500000	32546	2155	30809	201442;201443;201444;201445;201446;201447;201448;201449;201450;201451;201452;201453	272360;272361;272362;272363;272364;272365;272366;272367;272368;272369;272370;272371;272372;272373;272374;272375;272376;272377;272378;272379	272365			20	
LLYPDHFHLLR	0	Unmodified	1422.7772	0.7772047	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	4.9			29						6	11	11	5	8	68.624	66.181	2;3;4	7.1435E-08	56968	160511_QHF_FH_JSI11i_3	103.34	82.501			1.047	0.98817	21.854	33	6	Median	1.1415	0.94329	22.837	11	2	Median	0.85548	0.98902	29.495	10	2	Median	1.0294	1.0392	6.0372	4	0	Linear	1.0208	1.0635	13.69	8	2	Median	2238800000	974540000	1264200000	408540000	187220000	221320000	394300000	205200000	189100000	520860000	216170000	304690000	915090000	365950000	549140000	32547	1793	30810	201454;201455;201456;201457;201458;201459;201460;201461;201462;201463;201464;201465;201466;201467;201468;201469;201470;201471;201472;201473;201474;201475;201476;201477;201478;201479;201480;201481;201482;201483;201484;201485;201486;201487;201488	272380;272381;272382;272383;272384;272385;272386;272387;272388;272389;272390;272391;272392;272393;272394;272395;272396;272397;272398;272399;272400;272401;272402;272403;272404;272405;272406;272407;272408;272409;272410;272411;272412;272413;272414;272415;272416;272417;272418;272419;272420;272421;272422;272423;272424;272425;272426;272427;272428;272429;272430;272431;272432;272433;272434;272435;272436;272437;272438;272439	272388			58	
LLYPLGGQTNLR	0	Unmodified	1343.7561	0.75613491	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	63.348	62.751	2	0.0018604	52665	160511_QHF_FH_JSI10i_3	59.426	37.34			1.082	1.1054	5.4607	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93108	1.0779	NaN	1	0	Median	1.2948	1.1968	NaN	1	0	Median	1.082	1.1054	NaN	1	0	Median	268560000	120140000	148430000	0	0	0	70125000	41183000	28942000	87952000	33680000	54271000	110490000	45273000	65213000	32548	2925	30811	201489;201490;201491	272440	272440			1	
LLYPPETGLFLVR	0	Unmodified	1516.8654	0.865351	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	99.836	99.704	2;3	0.0020625	88319	160511_QHF_FH_JSI10i_2	58.37	31.255			0.88797	1.0657	18.437	3	1	Plateau	1.2178	1.06	NaN	1	0	Median	0.88797	1.0657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74994	0.7723	NaN	1	1	Median	92563000	47266000	45297000	37012000	17154000	19858000	52985000	28122000	24863000	0	0	0	2566700	1990600	576080	32549	1517	30812	201492;201493;201494	272441;272442;272443;272444;272445	272445			5	
LLYTFPGWK	1	Unmodified	1123.6066	0.60661712	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.896	81.023	2	0.014153	70110	160511_QHF_FH_JSI12i_2	45.68	28.44			0.96415	1.0033	16.729	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89731	0.89133	NaN	1	0	Median	1.036	1.1292	NaN	1	0	Median	46993000	21811000	25182000	0	0	0	0	0	0	29084000	13772000	15312000	17909000	8038800	9869900	32550	3676	30813	201495;201496	272446;272447	272446			2	
LLYVTPEK	1	Unmodified	961.54843	0.54843354	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	41.567	38.321	2	0.0020959	32766	160511_QHF_FH_JSI12i_2	82.671	0			0.9853	0.96266	20.63	12	0	Median	1.1935	0.96792	4.9251	3	0	Median	0.73935	0.896	10.558	3	0	Median	1.0905	1.0991	30.977	3	0	Plateau	1.0612	1.1639	32.702	3	0	Plateau	2412600000	1179700000	1232900000	430000000	202570000	227440000	645040000	360890000	284150000	772130000	365010000	407130000	565470000	251250000	314220000	32551	1817	30814	201497;201498;201499;201500;201501;201502;201503;201504;201505;201506;201507;201508	272448;272449;272450;272451;272452;272453;272454;272455;272456;272457;272458;272459;272460;272461;272462;272463;272464;272465	272449			18	
LLYWWAGTTWYR	0	Unmodified	1614.7983	0.79833407	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			37.709	37.338	2	0.016048	33448	160511_QHF_FH_JSI10i_1	50.909	35.643			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15972000	15972000	0	0	0	0	15972000	15972000	0	0	0	0	0	0	0	32552	5290	30815	201509	272466	272466			1	
LLYYVFPYLR	0	Unmodified	1345.7434	0.74344495	5601	Q9Y3R5	DOPEY2	Protein dopey-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		90.841	83.301	2	6.9192E-06	48037	160513_QHF_FH_JSI10Kac_6	111.65	48.342			0.9948	1.047	32.606	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68894	0.83144	NaN	1	0	Median	1.4364	1.3185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	343210000	193840000	149360000	0	0	0	284990000	167170000	117810000	58217000	26670000	31547000	0	0	0	32553	5601	30816	201510;201511	272467;272468	272468			2	
LMAAYVQLMPALVQR	0	Unmodified	1702.9263	0.92625348	5660	Q9Y5J6	TIMM10B	Mitochondrial import inner membrane translocase subunit Tim10 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	1	2		93.211	88.118	2;3	4.4113E-54	45295	160513_QHF_FH_JSI11Kac_6	190.96	167.11			0.99803	1.1139	47.872	3	3	Plateau	0.56841	0.50602	NaN	1	1	Median	0.74288	0.88815	NaN	1	1	Median	1.3408	1.3113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74443000	38882000	35561000	3375300	2436600	938730	31115000	21686000	9428700	39953000	14759000	25194000	0	0	0	32554	5660	30817	201512;201513;201514;201515	272469;272470;272471;272472	272470			4	
LMAEDEEGYRK	1	Unmodified	1339.6078	0.60781569	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	19.458	18.693	2;3	0.013802	15740	160511_QHF_FH_JSI9i_2	43.512	32.989			1.0116	0.98184	19.63	4	2	Median	1.1099	0.95846	NaN	1	0	Median	0.63786	0.7852	NaN	1	1	Median	1.3239	1.2663	NaN	1	1	Median	0.92206	1.0058	NaN	1	0	Median	74939000	43077000	31862000	19635000	9837200	9797600	21427000	14717000	6710000	15034000	8327400	6706300	18843000	10195000	8648200	32555	1736;1737	30818	201516;201517;201518;201519;201520	272473;272474;272475;272476;272477;272478	272475			6	
LMAEGAPK	1	Unmodified	815.42112	0.42112454	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	15.748	15.019	2	0.017484	12078	160511_QHF_FH_JSI12i_2	48.561	27.015			1.1196	1.1004	27.185	5	1	Median	1.0286	0.86076	2.3515	2	1	Median	1.1667	1.4399	NaN	1	0	Median	1.1196	1.1004	NaN	1	0	Median	1.3553	1.5195	NaN	1	0	Median	366940000	189030000	177910000	114720000	58894000	55824000	77670000	44662000	33007000	65130000	32094000	33036000	109420000	53377000	56043000	32556	1388	30819	201521;201522;201523;201524;201525	272479;272480;272481;272482;272483	272479			5	
LMALLGQALK	1	Unmodified	1056.6365	0.63653704	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		7	7							3	4	3	4	75.549	74.762	2	1.7173E-05	64942	160511_QHF_FH_JSI12i_3	111.01	80.822			4.6081	4.5695	232.85	14	14	Median	5.9758	4.7729	214.78	3	3	Median	1.1821	1.4158	247.91	4	4	Median	0.48779	0.46731	317.04	3	3	Plateau	1.9089	2.0527	267.11	4	4	Median	2295600000	1053900000	1241600000	338740000	90689000	248050000	492680000	256970000	235710000	543290000	267950000	275340000	920870000	438340000	482530000	32557	2801	30820	201526;201527;201528;201529;201530;201531;201532;201533;201534;201535;201536;201537;201538;201539	272484;272485;272486;272487;272488;272489;272490;272491;272492;272493;272494;272495;272496;272497;272498	272498			15	
LMALYVASHYK	1	Unmodified	1294.6744	0.67437911	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			10						10	6	6	3	5	60.667	55.368	2;3	3.9617E-12	30404	160513_QHF_FH_JSI10Kac_6	140.49	127.08			0.89304	0.76453	81.632	20	14	Median	0.89528	0.76453	87.822	6	2	Median	0.69835	0.83358	105.69	6	6	Median	0.89418	0.85726	18.751	3	1	Median	0.73629	0.74545	74.881	5	5	Median	4125400000	2128500000	1996900000	1178500000	559610000	618930000	1133200000	696690000	436510000	981860000	500410000	481450000	831780000	371750000	460040000	32558	4623	30821	201540;201541;201542;201543;201544;201545;201546;201547;201548;201549;201550;201551;201552;201553;201554;201555;201556;201557;201558;201559	272499;272500;272501;272502;272503;272504;272505;272506;272507;272508;272509;272510;272511;272512;272513;272514;272515;272516;272517;272518;272519;272520;272521;272522;272523;272524	272523			26	
LMALYVASHYK	1	Oxidation (M)	1310.6693	0.66929373	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	3	2	2	2	53.418	44.937	2;3	2.9516E-11	23823	160513_QHF_FH_JSI9Kac_6	138.98	121.16			1.0142	0.92547	21.673	9	1	Median	0.9895	0.85325	12.262	3	0	Plateau	0.93761	1.1065	25.269	2	0	Median	1.3096	1.2276	36.115	2	1	Median	0.81912	0.88885	4.3569	2	0	Median	408470000	202130000	206340000	154120000	69980000	84139000	107120000	61403000	45720000	73395000	33574000	39821000	73830000	37171000	36659000	32559	4623	30821	201560;201561;201562;201563;201564;201565;201566;201567;201568	272525;272526;272527;272528;272529;272530;272531;272532;272533;272534;272535;272536	272530		2505	12	
LMAPYTPFLTELMYQNLK	1	Unmodified	2172.0999	0.099920326	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	3	1	4	4	101.32	98.934	3	6.8181E-82	90148	160511_QHF_FH_JSI11i_2	242.26	231.89			1.061	1.0351	30.295	12	4	Median	1.1468	0.98439	9.5789	3	0	Median	1.0656	1.2355	NaN	1	0	Median	1.07	1.0645	28.431	4	2	Median	1.0045	1.0739	46.725	4	2	Median	2787800000	1394200000	1393500000	387630000	180180000	207450000	65380000	43848000	21533000	1363200000	676070000	687090000	971610000	494140000	477470000	32560	1520	30822	201569;201570;201571;201572;201573;201574;201575;201576;201577;201578;201579;201580	272537;272538;272539;272540;272541;272542;272543;272544;272545;272546;272547;272548;272549	272544			11	
LMATMFQNLFPSINVHK	1	Oxidation (M)	2006.0118	0.01177402	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	1	0	By MS/MS				3	0			2							2				96.489	95.851	3	0.0014872	79880	160511_QHF_FH_JSI9i_3	48.216	41.8			1.2662	1.0784	11.319	2	1	Median	1.2662	1.0784	11.319	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20605000	9396400	11209000	20605000	9396400	11209000	0	0	0	0	0	0	0	0	0	32561	4914	30823	201581;201582	272550;272551	272550		2554;2555	2	
LMATMFQNLFPSINVHK	1	Unmodified	1990.0169	0.016859398	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.567	84.846	3	5.8882E-05	48291	160513_QHF_FH_JSI10Kac_6	76.158	60.766			0.90733	1.0453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90733	1.0453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181460000	84526000	96936000	0	0	0	181460000	84526000	96936000	0	0	0	0	0	0	32562	4914	30823	201583	272552;272553	272553			2	
LMCPQEIVDYIADK	1	Unmodified	1693.8055	0.80552922	174	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.04	100.83	2	0.037292	86764	160511_QHF_FH_JSI12i_2	46.985	32.109			1.0034	1.1406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0034	1.1406	NaN	1	1	Median	52620000	28482000	24138000	0	0	0	0	0	0	0	0	0	52620000	28482000	24138000	32563	174	30824	201584	272554	272554			1	
LMCPQEIVDYIADKK	2	Unmodified	1821.9005	0.90049224	174	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	3	1	1	94.212	93.686	3	9.8135E-12	81036	160511_QHF_FH_JSI12i_3	130.06	117.77			1.0226	1.1244	39.351	7	3	Median	1.9488	1.6396	34.15	2	2	Median	0.94605	1.1244	47.747	3	1	Median	0.8715	0.83357	NaN	1	0	Median	1.0226	1.0133	NaN	1	0	Median	460650000	243520000	217130000	22864000	9490100	13374000	104570000	56065000	48505000	180870000	98471000	82401000	152350000	79491000	72855000	32564	174	30825	201585;201586;201587;201588;201589;201590;201591	272555;272556;272557;272558;272559;272560;272561;272562;272563;272564;272565;272566;272567;272568;272569;272570;272571;272572	272571			18	
LMCTNAMIYNKPETIYYK	2	Unmodified	2252.068	0.06796827	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.822	63.536	3	0.00014362	54824	160511_QHF_FH_JSI12i_3	80.638	73.017			1.2456	1.2267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2456	1.2267	NaN	1	1	Median	27491000	14484000	13007000	0	0	0	0	0	0	0	0	0	27491000	14484000	13007000	32565	4903	30826	201592	272573;272574	272574			2	
LMDEAVLALR	0	Unmodified	1129.6165	0.61652988	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.163	66.864	2	0.0029604	57541	160511_QHF_FH_JSI12i_2	71.425	34.584			0.76991	0.86324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76991	0.86324	NaN	1	1	Median	109460000	56229000	53228000	0	0	0	0	0	0	0	0	0	109460000	56229000	53228000	32566	3860	30827	201593	272575	272575			1	
LMDEVAGIVAAR	0	Unmodified	1243.6595	0.65945733	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							1	2	5	3	63.001	62.348	2	2.8686E-05	54845	160511_QHF_FH_JSI9i_2	107.79	88.001			1.1038	1.1764	50.124	10	6	Median	1.061	0.89057	NaN	1	0	Median	1.1046	1.3612	101.17	2	1	Median	1.5037	1.5118	52.677	5	5	Median	1.1038	1.1764	0.60697	2	0	Median	1428700000	660390000	768350000	219300000	100280000	119010000	315060000	144310000	170760000	649410000	302600000	346810000	244970000	113200000	131770000	32567	99	30828	201594;201595;201596;201597;201598;201599;201600;201601;201602;201603;201604	272576;272577;272578;272579;272580;272581;272582;272583;272584;272585;272586;272587	272583			12	
LMDGEEPLPMLPSYK	1	Unmodified	1718.8259	0.82593031	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.25	0.433	3	1								1		2	1	83.433	82.863	2;3	4.5809E-07	75558	160511_QHF_FH_JSI12i_1	137.89	92.755			1.3002	1.3541	39.633	3	1	Plateau	0.77128	0.6231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0882	1.0559	NaN	1	0	Median	1.3002	1.3541	NaN	1	1	Median	93078000	42109000	50969000	13374000	7857400	5516400	0	0	0	16177000	5995400	10182000	63527000	28256000	35271000	32568	999	30829	201605;201606;201607;201608	272588;272589;272590	272589			3	
LMDHVGTEPSIK	1	Unmodified	1325.6649	0.66493664	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	3	3	2	34.036	33.14	2;3	1.9372E-05	29006	160511_QHF_FH_JSI10i_2	77.185	69.053			1.0191	0.92815	41	11	6	Median	1.0936	0.91378	40.075	3	2	Plateau	0.68764	0.85573	61.235	3	2	Median	1.0191	1.0429	44.743	3	2	Median	0.80897	0.9138	2.2038	2	0	Median	1636600000	795530000	841050000	298790000	112990000	185810000	407700000	204620000	203080000	588880000	288700000	300180000	341210000	189220000	151980000	32569	817	30830	201609;201610;201611;201612;201613;201614;201615;201616;201617;201618;201619	272591;272592;272593;272594;272595;272596;272597;272598;272599;272600;272601;272602;272603;272604;272605;272606;272607	272603			17	
LMDLDVEQLGIPEQEYSCVVK	1	Unmodified	2464.1866	0.18656308	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	100.77	100.67	2;3	9.3796E-121	91253	160511_QHF_FH_JSI12i_1	278.84	259.26			0.8497	0.87262	14.937	6	1	Median	1.0537	0.84126	NaN	1	1	Median	0.76446	0.90951	8.6936	2	0	Median	0.90176	0.89031	NaN	1	0	Median	0.94055	0.99532	28.687	2	0	Median	852480000	445080000	407390000	25153000	9707900	15445000	347560000	189550000	158000000	231640000	126000000	105640000	248120000	119820000	128310000	32570	1010	30831	201620;201621;201622;201623;201624;201625	272608;272609;272610;272611;272612;272613;272614;272615;272616;272617;272618	272612			11	
LMDLLADSR	0	Unmodified	1032.5274	0.52738052	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.867	56.943	2	0.0069989	48840	160511_QHF_FH_JSI12i_2	62.582	38.814			1.0426	1.1012	38.748	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4447	1.4483	NaN	1	1	Median	0.75245	0.83732	NaN	1	1	Median	341700000	171930000	169770000	0	0	0	0	0	0	201900000	88177000	113730000	139790000	83753000	56042000	32571	446	30832	201626;201627	272619;272620	272619			2	
LMDLLGEGLK	1	Unmodified	1087.5947	0.59473181	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.93	3	4	1					3		1	3	4	3	76.74	73.479	2	7.3935E-06	65966	160511_QHF_FH_JSI9i_2	107.15	81.417			1.0335	1.1396	23.725	11	4	Median	1.3386	1.1396	NaN	1	0	Median	1.0195	1.2687	19.565	3	1	Plateau	1.0988	1.1057	24.801	4	2	Median	1.0335	1.1616	33.196	3	1	Median	2029300000	896660000	1132700000	371530000	145570000	225960000	472060000	248920000	223140000	811120000	294720000	516400000	374630000	207450000	167180000	32572	1818	30833	201628;201629;201630;201631;201632;201633;201634;201635;201636;201637;201638	272621;272622;272623;272624;272625;272626;272627;272628	272625			8	
LMDLLPK	1	Unmodified	828.47791	0.47791114	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		60.001	59.315	2	0.027514	51227	160511_QHF_FH_JSI11i_2	53.554	28.556			0.63407	0.7128	14.877	2	1	Median	NaN	NaN	NaN	0	0	Median	0.64311	0.79187	NaN	1	1	Median	0.62515	0.64162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	321290000	191290000	130000000	0	0	0	133950000	83816000	50138000	187340000	107480000	79862000	0	0	0	32573	2746	30834	201639;201640	272629;272630;272631	272629			3	
LMDLLPKR	1	Unmodified	984.57902	0.57902216	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.298	45.736	3	0.028961	38200	160511_QHF_FH_JSI10i_3	27.824	18.911			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32574	2746	30835	201641	272632	272632			1	
LMDLQLSDSNFR	0	Unmodified	1437.6922	0.69221402	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	71.11	70.158	2	0.04312	61486	160511_QHF_FH_JSI11i_2	45.879	35.356			1.2485	1.2838	11.594	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1976	1.1828	NaN	1	0	Median	1.3015	1.3935	NaN	1	0	Median	40797000	16494000	24303000	0	0	0	0	0	0	26525000	9265900	17259000	14272000	7228000	7043800	32575	4076	30836	201642;201643	272633	272633			1	
LMDLSHR	0	Unmodified	870.43817	0.43817159	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	18.16	17.574	3	0.010806	15047	160511_QHF_FH_JSI10i_2	45.081	15.932			0.97588	0.90475	56.983	5	2	Median	NaN	NaN	NaN	0	0	Median	0.67966	0.81373	99.13	2	1	Median	0.97588	0.90475	NaN	1	0	Median	0.88162	0.91573	54.814	2	1	Median	230050000	130540000	99507000	0	0	0	78326000	46784000	31541000	41159000	17828000	23331000	110560000	65929000	44635000	32576	3258	30837	201644;201645;201646;201647;201648;201649	272634;272635;272636;272637;272638;272639	272638			6	
LMDMGMLLPGHR	0	Unmodified	1369.6669	0.66686767	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.233	73.439	3	1.6268E-05	65422	160511_QHF_FH_JSI11i_3	77.062	68.549			1.0241	0.98646	23.965	4	0	Median	1.8531	1.5625	NaN	1	0	Median	0.82574	0.93797	NaN	1	0	Median	1.1004	0.99514	NaN	1	0	Median	0.95307	0.97786	NaN	1	0	Median	144790000	73397000	71397000	10785000	3329800	7455100	11867000	5979800	5887000	52179000	25631000	26548000	69964000	38457000	31507000	32577	4191	30838	201650;201651;201652;201653	272640;272641;272642;272643	272641			4	
LMDQASR	0	Unmodified	819.39089	0.39088704	1514	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	8.3273	7.9924	2	0.026198	5654	160511_QHF_FH_JSI12i_2	54.205	19.313			0.89548	0.91834	10.805	6	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78281	0.94927	10.369	2	0	Median	1.0756	1.0744	16.504	2	1	Median	0.89548	0.96907	5.2865	2	0	Median	1093700000	580200000	513460000	0	0	0	397060000	238600000	158460000	407120000	191850000	215270000	289490000	149760000	139730000	32578	1514	30839	201654;201655;201656;201657;201658;201659	272644;272645;272646;272647;272648;272649	272645			6	
LMDQLEALK	1	Unmodified	1059.5634	0.56343168	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.25	0.433	3	1									2		2	55.301	54.596	2	0.014323	49135	160511_QHF_FH_JSI10i_1	55.549	31.395			1.194	1.3681	78.782	4	3	Median	NaN	NaN	NaN	0	0	Median	0.8433	0.98796	101.68	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4632	1.5952	77.366	2	1	Median	256910000	127010000	129900000	0	0	0	138790000	73258000	65533000	0	0	0	118120000	53756000	64363000	32579	4888	30840	201660;201661;201662;201663	272650;272651;272652;272653	272652			4	
LMDSMVAEFLK	1	Unmodified	1282.6301	0.63013104	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	93.424	92.897	2	0.00014394	82406	160511_QHF_FH_JSI10i_2	94.692	60.439			1.9296	2.2452	7.6142	3	3	Median	NaN	NaN	NaN	0	0	Median	1.9296	2.3536	NaN	1	1	Median	2.2092	2.2452	NaN	1	1	Median	1.8192	2.0279	NaN	1	1	Median	254250000	80634000	173610000	0	0	0	72681000	21092000	51589000	84432000	29804000	54628000	97133000	29738000	67395000	32580	1491	30841	201664;201665;201666	272654;272655;272656	272656			3	
LMDVGLIAIR	0	Unmodified	1099.6424	0.6423507	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.55	2	4	4					2	4	4	5	4	3	82.109	78.346	2	5.7356E-14	72278	160511_QHF_FH_JSI10i_2	157.68	122.85			1.0584	1.0733	13.006	16	0	Median	1.3318	1.0924	13.75	4	0	Median	0.80365	0.96025	11.521	5	0	Median	1.1632	1.1464	14.701	4	0	Median	0.98383	1.0898	5.2492	3	0	Median	4889400000	2238200000	2651200000	1315200000	507100000	808080000	1631100000	813710000	817400000	1271000000	569000000	701960000	672150000	348430000	323720000	32581	1386	30842	201667;201668;201669;201670;201671;201672;201673;201674;201675;201676;201677;201678;201679;201680;201681;201682	272657;272658;272659;272660;272661;272662;272663;272664;272665;272666;272667;272668;272669;272670;272671;272672;272673;272674;272675;272676;272677;272678;272679	272672			22	
LMDVGLIAIR	0	Oxidation (M)	1115.6373	0.63726532	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5		1	1	2	2	76.284	65.74	2	0.009035	32461	160513_QHF_FH_JSI12Kac_5	53.968	36.728			0.9598	1.0722	23.911	5	0	Median	1.255	1.0722	NaN	1	0	Median	0.91328	1.0874	NaN	1	0	Median	1.3293	1.3214	NaN	1	0	Median	0.78578	0.85037	29.822	2	0	Median	70813000	34634000	36179000	19502000	8787000	10715000	16703000	9188600	7514700	17975000	7384800	10590000	16633000	9273400	7359300	32582	1386	30842	201683;201684;201685;201686;201687;201688	272680;272681;272682;272683;272684	272683		1037	5	
LMEALEPPLEEQQI	0	Unmodified	1638.8175	0.81747411	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.374	88.939	2	0.0074846	80780	160511_QHF_FH_JSI10i_1	51.445	41.074			0.74987	0.7502	20.745	4	0	Median	0.95683	0.77896	NaN	1	0	Median	0.43525	0.503	NaN	1	0	Median	0.77434	0.76404	NaN	1	0	Median	0.72617	0.73662	NaN	1	0	Median	103330000	61866000	41467000	21204000	10911000	10293000	27262000	17934000	9327900	27864000	15725000	12139000	27003000	17295000	9707500	32583	4143	30843	201689;201690;201691;201692	272685;272686;272687;272688	272687			4	
LMEDLDR	0	Oxidation (M)	906.41168	0.41168206	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				2	2	2	2	25.709	22.528	2	0.018146	23339	160511_QHF_FH_JSI12i_1	69.998	34.118			0.85751	0.87454	20.804	8	0	Median	1.2327	1.033	33.543	2	0	Median	0.7096	0.84283	15.218	2	0	Median	0.88255	0.87354	28.885	2	0	Median	0.82315	0.88757	18.843	2	0	Median	1254800000	658650000	596110000	383530000	187280000	196250000	223080000	110010000	113070000	367830000	208190000	159630000	280330000	153170000	127150000	32584	852	30844	201693;201694;201695;201696;201697;201698;201699;201700	272689;272690;272691;272692;272693;272694	272690		379	6	
LMEDLDR	0	Unmodified	890.41677	0.41676744	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							2	1	2	1	26.852	26.181	2	0.010534	23166	160511_QHF_FH_JSI10i_1	74.415	35.597			0.92241	0.92622	32.349	6	0	Median	0.81016	0.66429	24.587	2	0	Median	0.90337	1.0853	NaN	1	0	Median	0.96807	0.96036	34.993	2	0	Median	1.1731	1.2591	NaN	1	0	Median	10699000000	5000300000	5698900000	1995700000	1119500000	876250000	2699900000	1602500000	1097400000	4266400000	1555700000	2710700000	1737200000	722610000	1014600000	32585	852	30844	201701;201702;201703;201704;201705;201706	272695;272696;272697;272698;272699	272697			5	
LMEDLDRNK	1	Unmodified	1132.5547	0.55465791	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.03	4.46	4	15	12				1	3	1	8	7	8	13	21.338	19.576	2;3	1.3525E-21	16818	160511_QHF_FH_JSI9i_2	169.09	134.84			1.095	1.2041	123.34	35	25	Median	3.0866	2.4912	108.45	7	6	Median	0.83602	1.0011	133.05	7	3	Median	2.2352	2.1044	82.791	8	5	Median	0.81946	0.83152	143.89	13	11	Median	45423000000	20469000000	24954000000	5603600000	2746900000	2856700000	8258500000	4030200000	4228300000	13891000000	4907200000	8983500000	17671000000	8785000000	8885600000	32586	852	30845	201707;201708;201709;201710;201711;201712;201713;201714;201715;201716;201717;201718;201719;201720;201721;201722;201723;201724;201725;201726;201727;201728;201729;201730;201731;201732;201733;201734;201735;201736;201737;201738;201739;201740;201741;201742	272700;272701;272702;272703;272704;272705;272706;272707;272708;272709;272710;272711;272712;272713;272714;272715;272716;272717;272718;272719;272720;272721;272722;272723;272724;272725;272726;272727;272728;272729;272730;272731;272732;272733;272734;272735;272736;272737;272738;272739;272740;272741;272742;272743	272723			44	
LMEDLDRNK	1	Oxidation (M)	1148.5496	0.54957253	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	4.93	1	10	5				2	2		2	3	7	8	17.939	15.714	2;3	0.00012565	16606	160511_QHF_FH_JSI9i_2	112.41	77.603			1.4309	1.3823	135.82	19	4	Median	1.4327	1.2214	17.509	2	0	Median	1.3022	1.5615	83.111	2	0	Median	1.7665	1.8095	196.09	7	3	Median	1.3636	1.4311	101.39	8	1	Median	4209100000	1392100000	2817000000	511780000	184990000	326780000	492410000	177510000	314900000	1426100000	481450000	944690000	1778800000	548170000	1230600000	32587	852	30845	201743;201744;201745;201746;201747;201748;201749;201750;201751;201752;201753;201754;201755;201756;201757;201758;201759;201760;201761;201762	272744;272745;272746;272747;272748;272749;272750;272751;272752;272753;272754;272755;272756;272757;272758;272759;272760;272761;272762;272763	272750		379	19	
LMEEDELPSWIIK	1	Unmodified	1601.8011	0.80109577	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		93.783	93.599	2	0.00011876	84785	160511_QHF_FH_JSI10i_1	88.596	73.917			1.2041	1.3365	28.828	3	0	Plateau	0.98436	0.86267	NaN	1	0	Median	1.2041	1.396	NaN	1	0	Median	0.85552	0.83364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60091000	28891000	31200000	18395000	8721400	9673900	27534000	13494000	14040000	14162000	6675600	7486200	0	0	0	32588	1736;1737	30846	201763;201764;201765	272764;272765;272766	272766			3	
LMEEIMSEK	1	Unmodified	1108.5144	0.51443258	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								3	3	4	3	43.292	42.466	2	0.00028828	36379	160511_QHF_FH_JSI11i_2	94.85	56.058			0.4116	0.41922	116.29	13	13	Median	0.4032	0.34658	109.75	3	3	Median	0.22944	0.27233	113.91	3	3	Plateau	0.95705	0.98424	112.87	4	4	Median	3.6258	4.0092	145.48	3	3	Median	5753100000	3131700000	2621400000	986290000	566810000	419480000	1177200000	791880000	385340000	2556000000	1339300000	1216700000	1033600000	433730000	599860000	32589	1128	30847	201766;201767;201768;201769;201770;201771;201772;201773;201774;201775;201776;201777;201778	272767;272768;272769;272770;272771;272772;272773;272774;272775;272776;272777;272778;272779	272776			13	
LMELFPANK	1	Unmodified	1061.558	0.55795237	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							3	3	2	3	61.577	60.752	2	2.1385E-05	52516	160511_QHF_FH_JSI11i_2	106.36	81.505			0.94957	0.86257	34.688	11	6	Median	1.0046	0.83199	21.915	3	2	Plateau	0.73861	0.86257	14.682	3	1	Median	0.70643	0.69219	74.934	2	1	Median	1.0134	1.1438	12.378	3	2	Median	4230700000	2236700000	1994100000	808370000	436690000	371670000	1055800000	594480000	461350000	1442300000	741590000	700740000	924190000	463910000	460280000	32590	3218	30848	201779;201780;201781;201782;201783;201784;201785;201786;201787;201788;201789	272780;272781;272782;272783;272784;272785;272786;272787;272788;272789;272790;272791;272792	272788			13	
LMELHGEGSSSGK	1	Oxidation (M)	1346.6136	0.61362935	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.44	1	29	12				2	4	1	12	8	14	15	14.261	12.517	2;3	2.5946E-05	7541	160511_QHF_FH_JSI12i_2	95.428	78.896			1.1341	1.0934	80.633	44	2	Median	1.2907	1.1081	45.927	10	0	Median	0.76111	0.92298	106.32	8	1	Median	1.1782	1.1513	63.075	12	0	Median	0.99103	1.0379	101.58	14	1	Median	5501700000	2503500000	2998200000	959040000	459470000	499570000	921920000	464460000	457460000	1579500000	658530000	920980000	2041200000	921030000	1120200000	32591	1948	30849	201790;201791;201792;201793;201794;201795;201796;201797;201798;201799;201800;201801;201802;201803;201804;201805;201806;201807;201808;201809;201810;201811;201812;201813;201814;201815;201816;201817;201818;201819;201820;201821;201822;201823;201824;201825;201826;201827;201828;201829;201830;201831;201832;201833;201834;201835;201836;201837;201838	272793;272794;272795;272796;272797;272798;272799;272800;272801;272802;272803;272804;272805;272806;272807;272808;272809;272810;272811;272812;272813;272814;272815;272816;272817;272818;272819;272820;272821;272822;272823;272824;272825;272826;272827;272828;272829;272830;272831;272832;272833;272834;272835;272836;272837;272838;272839	272799		1617	45	
LMELHGEGSSSGK	1	Unmodified	1330.6187	0.61871473	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.45	4	12	9					8	7	9	13	8	10	20.272	16.443	2;3	3.8606E-11	13223	160511_QHF_FH_JSI12i_3	124.51	115.08			0.98804	1.0304	54.908	37	6	Median	1.1637	0.98397	24.54	9	1	Median	0.98804	1.1855	85.322	11	3	Median	0.9406	0.91829	35.776	8	0	Median	0.8872	0.96332	51.704	9	2	Median	24469000000	12184000000	12285000000	2868800000	1610800000	1258100000	6072500000	3467200000	2605300000	7726700000	3464200000	4262500000	7801300000	3642000000	4159300000	32592	1948	30849	201839;201840;201841;201842;201843;201844;201845;201846;201847;201848;201849;201850;201851;201852;201853;201854;201855;201856;201857;201858;201859;201860;201861;201862;201863;201864;201865;201866;201867;201868;201869;201870;201871;201872;201873;201874;201875;201876;201877;201878	272840;272841;272842;272843;272844;272845;272846;272847;272848;272849;272850;272851;272852;272853;272854;272855;272856;272857;272858;272859;272860;272861;272862;272863;272864;272865;272866;272867;272868;272869;272870;272871;272872;272873;272874;272875;272876;272877;272878;272879;272880;272881;272882;272883;272884;272885;272886;272887;272888;272889;272890;272891;272892;272893;272894;272895;272896;272897;272898;272899;272900	272893			61	
LMENMRNDIASHPPVEGSYAPR	0	Unmodified	2483.1686	0.16856203	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		51.904	50.855	3;4	3.8849E-05	42429	160511_QHF_FH_JSI10i_3	56.247	42.415			1.5635	1.4211	4.4007	4	1	Median	1.6275	1.3602	5.876	2	0	Median	1.2378	1.4311	NaN	1	0	Median	1.504	1.4243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	296120000	125620000	170510000	78295000	37066000	41229000	180480000	73903000	106580000	37341000	14646000	22695000	0	0	0	32593	3213	30850	201879;201880;201881;201882	272901;272902;272903	272902			3	
LMEPIYLVEIQCPEQVVGGIYGVLNR	0	Unmodified	2988.5453	0.54528578	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		102.66	102.57	3;4	9.1199E-32	90378	160511_QHF_FH_JSI11i_2	149.32	142.88			1.042	1.0691	24.669	3	0	Median	1.5283	1.3013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90436	0.92313	20.767	2	0	Median	NaN	NaN	NaN	0	0	Median	757850000	347330000	410520000	85101000	34576000	50525000	0	0	0	672750000	312760000	360000000	0	0	0	32594	1033	30851	201883;201884;201885	272904;272905;272906	272905			3	
LMEPIYLVEIQCPEQVVGGIYGVLNRK	1	Unmodified	3116.6402	0.6402488	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5		3	4	3	99.82	95.838	3;4	2.5119E-84	53193	160513_QHF_FH_JSI10Kac_6	213.97	182.37			0.92689	0.97116	26.611	10	2	Median	NaN	NaN	NaN	0	0	Median	0.96817	1.1408	12.902	3	1	Median	0.88788	0.8518	12.907	4	0	Linear	0.9119	0.93615	19.892	3	1	Plateau	1933900000	966460000	967400000	0	0	0	508710000	256090000	252630000	1082500000	553600000	528910000	342650000	156780000	185870000	32595	1033	30852	201886;201887;201888;201889;201890;201891;201892;201893;201894;201895	272907;272908;272909;272910;272911;272912;272913;272914;272915;272916;272917;272918	272918			11	
LMETQEEDVVLLTAGEHNK	1	Unmodified	2155.0467	0.046698781	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	3	1	66.306	65.62	3	1.1784E-09	56541	160511_QHF_FH_JSI12i_2	114.56	110.96			1.083	1.1061	20.225	7	2	Median	1.2973	1.1061	NaN	1	0	Median	0.69837	0.83574	26.88	2	0	Median	1.1309	1.1618	10.594	3	2	Median	1.0447	1.1595	NaN	1	0	Median	741450000	380720000	360730000	148480000	71595000	76886000	188340000	105080000	83262000	262770000	115700000	147070000	141850000	88343000	53511000	32596	3119	30853	201896;201897;201898;201899;201900;201901;201902	272919;272920;272921;272922;272923;272924;272925;272926;272927;272928;272929;272930	272922			11	
LMFEELR	0	Unmodified	936.47389	0.47388839	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.606	57.675	2	0.0015371	49842	160511_QHF_FH_JSI11i_2	119.56	93.448			0.85563	0.91546	6.5649	4	0	Median	0.94545	0.81652	NaN	1	0	Median	0.76641	0.94506	NaN	1	0	Median	0.9082	0.93061	NaN	1	0	Median	0.80609	0.90055	NaN	1	0	Median	1509800000	742640000	767110000	265960000	101920000	164030000	349630000	199930000	149700000	534700000	244340000	290370000	359460000	196450000	163010000	32597	5596	30854	201903;201904;201905;201906	272931;272932;272933;272934;272935;272936;272937;272938;272939	272935			9	
LMFNSPGFVEYVVDR	0	Unmodified	1771.8603	0.86034198	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.88	0.331		1	7							3	2	3		100.15	100.04	2;3	6.4841E-40	82901	160511_QHF_FH_JSI10i_3	236.61	213.01			1.1234	1.1277	24.326	7	3	Median	1.7759	1.476	38.069	2	1	Median	0.96584	1.1012	6.1228	2	0	Median	1.1234	1.064	17.497	3	2	Median	NaN	NaN	NaN	0	0	Median	488840000	236080000	252760000	93611000	36112000	57499000	146610000	82409000	64202000	248620000	117560000	131060000	0	0	0	32598	2730	30855	201907;201908;201909;201910;201911;201912;201913;201914	272940;272941;272942;272943;272944;272945;272946;272947;272948;272949;272950	272944			11	
LMFNSPGFVEYVVDR	0	Oxidation (M)	1787.8553	0.8552566	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			95.043	94.071	2	0.0020704	76871	160511_QHF_FH_JSI9i_3	61.435	47.277			1.0933	1.0828	1.2254	2	0	Median	1.2784	1.0735	NaN	1	0	Median	0.93492	1.0922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37523000	18000000	19524000	19225000	7891700	11333000	18299000	10108000	8190400	0	0	0	0	0	0	32599	2730	30855	201915;201916	272951;272952	272952		2110	2	
LMFSGLLVSSR	0	Unmodified	1208.6587	0.65872905	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.612	74.367	2	7.3323E-05	40277	160513_QHF_FH_JSI9Kac_6	95.642	83.358			1.1123	1.078	11.198	4	0	Median	1.2626	1.0557	NaN	1	0	Median	0.74202	0.87978	NaN	1	0	Median	1.1709	1.1256	NaN	1	0	Median	1.0566	1.1007	NaN	1	0	Median	626670000	322130000	304540000	135940000	48592000	87346000	337210000	198450000	138760000	117440000	56651000	60789000	36080000	18427000	17653000	32600	4337	30856	201917;201918;201919;201920	272953;272954;272955;272956;272957;272958	272954			6	
LMFSNCYK	1	Unmodified	1061.4674	0.4674228	457;1259;2622	P25440;O60885;Q15059	BRD2;BRD4;BRD3	Bromodomain-containing protein 2;Bromodomain-containing protein 4;Bromodomain-containing protein 3	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.706	41.595	2	0.0032965	35448	160511_QHF_FH_JSI12i_3	73.616	53.061			1.8012	1.7697	30.074	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5462	1.4307	NaN	1	0	Median	2.0983	2.189	NaN	1	0	Median	103640000	42564000	61075000	0	0	0	0	0	0	44324000	16825000	27499000	59315000	25739000	33576000	32601	1259;457;2622	30857	201921;201922	272959;272960	272960			2	
LMFSSVNSNLQR	0	Unmodified	1394.6976	0.69763375	5092	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				55.407	53.841	2	0.061001	44122	160511_QHF_FH_JSI9i_3	42.001	28.648			1.6616	1.3503	NaN	1	1	Median	1.6616	1.3503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17912000	7602300	10310000	17912000	7602300	10310000	0	0	0	0	0	0	0	0	0	32602	5092	30858	201923	272961	272961			1	
LMFTAFLPDSTGSFTR	0	Unmodified	1789.8709	0.87090667	1166	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	yes	yes	0	0	0	0	By MS/MS		By matching		3	0			2							1		1		101.43	101.34	2	3.6703E-05	82190	160511_QHF_FH_JSI9i_3	97.911	81.658			1.171	1.0057	10.955	2	0	Median	1.1618	0.93074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1804	1.0867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148940000	67929000	81010000	58345000	24176000	34170000	0	0	0	90594000	43754000	46840000	0	0	0	32603	1166	30859	201924;201925	272962	272962			1	
LMGCQDILENVPGR	0	Unmodified	1600.7701	0.77014677	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	66.676	65.746	2	4.3146E-05	57435	160511_QHF_FH_JSI11i_2	117.79	104.78			1.0573	1.1157	50.541	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78105	0.78045	NaN	1	1	Median	1.4312	1.595	NaN	1	0	Median	40494000	22749000	17744000	0	0	0	0	0	0	28792000	18083000	10709000	11702000	4666600	7035300	32604	2732	30860	201926;201927	272963;272964	272964			2	
LMGDEPDLDPDINK	1	Unmodified	1570.7185	0.71848835	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	58.107	57.616	2	3.5356E-06	51916	160511_QHF_FH_JSI10i_1	121.61	103.79			1.6018	1.6846	46.189	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.77929	0.93199	NaN	1	1	Median	0.69331	0.67798	NaN	1	1	Median	1.6276	1.6846	NaN	1	1	Median	259110000	120060000	139050000	0	0	0	67580000	36827000	30753000	56271000	33152000	23119000	135260000	50082000	85178000	32605	3921	30861	201928;201929;201930	272965;272966;272967	272967			3	
LMGDYLLR	0	Unmodified	979.51609	0.51608756	399	O60232	SSSCA1	Sjoegren syndrome/scleroderma autoantigen 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.083	59.578	2	0.022642	51767	160511_QHF_FH_JSI11i_2	43.769	20.878			0.98333	0.98188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98333	0.98188	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	215420000	115360000	100060000	0	0	0	0	0	0	215420000	115360000	100060000	0	0	0	32606	399	30862	201931	272968;272969	272969			2	
LMGEDEKPAAK	2	Unmodified	1187.5856	0.58562368	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	14.379	13.88	3	0.00044735	11429	160511_QHF_FH_JSI9i_2	60.598	46.152			1.0452	0.91	59.428	3	2	Median	1.0452	0.91	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78863	0.8276	83.685	2	2	Median	308150000	158940000	149220000	105290000	58393000	46898000	0	0	0	0	0	0	202860000	100540000	102320000	32607	5313	30863	201932;201933;201934	272970;272971;272972;272973	272972			4	
LMGFASFDSTK	1	Unmodified	1202.5642	0.56415996	3782	Q8WVK2	SNRNP27	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							1		2	3	64.47	63.912	2	0.0010953	55075	160511_QHF_FH_JSI12i_3	77.533	54.793			1.1562	1.193	12.168	6	5	Median	1.1755	1.006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.116	1.0815	18.521	2	1	Median	1.1372	1.2476	4.5203	3	3	Plateau	321100000	126470000	194630000	37488000	14444000	23044000	0	0	0	124290000	49820000	74472000	159320000	62209000	97110000	32608	3782	30864	201935;201936;201937;201938;201939;201940	272974;272975;272976;272977;272978;272979	272978			6	
LMGFFDFFK	1	Unmodified	1150.5521	0.55213871	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	102.18	102.1	2	2.3118E-05	91289	160511_QHF_FH_JSI11i_3	105.57	82.139			1.341	2.1184	39.017	4	0	Linear	1.1302	0.91466	NaN	1	0	Median	0.81119	0.93015	NaN	1	0	Median	1.5911	1.5024	NaN	1	0	Median	1.9933	2.0381	NaN	1	0	Median	533080000	207860000	325220000	64433000	27407000	37026000	74513000	37564000	36949000	132230000	50988000	81245000	261900000	91898000	170000000	32609	3272	30865	201941;201942;201943;201944	272980;272981;272982;272983;272984;272985;272986;272987	272980			8	
LMGHLGVVLYEYLGEEYPEVLGSILGALK	1	Unmodified	3161.6723	0.67226043	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.52	95.796	3	1.1959E-49	56565	160513_QHF_FH_JSI10Kac_6	171.52	163.12			0.82062	0.96636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82062	0.96636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131610000	81550000	50061000	0	0	0	131610000	81550000	50061000	0	0	0	0	0	0	32610	542	30866	201945	272988	272988			1	
LMGLEALK	1	Unmodified	873.49937	0.49937486	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.27	2	4	4						4	3	4	4	3	61.845	58.714	2	0.0012793	51009	160511_QHF_FH_JSI11i_2	91.626	57.888			0.98326	0.98753	17.663	14	1	Median	1.1942	1.0226	11.798	3	0	Median	0.81902	0.9665	29.746	4	1	Median	1.0309	1.0036	13.046	4	0	Median	1.0378	1.1227	15.492	3	0	Plateau	7341600000	3391700000	3949800000	1137000000	466220000	670770000	1739100000	1001100000	737990000	2735800000	1239600000	1496200000	1729600000	684730000	1044900000	32611	1630	30867	201946;201947;201948;201949;201950;201951;201952;201953;201954;201955;201956;201957;201958;201959	272989;272990;272991;272992;272993;272994;272995;272996;272997;272998;272999;273000;273001;273002;273003;273004;273005;273006;273007;273008;273009;273010	273004			22	
LMGLEALKSHIMAAK	2	Acetyl (K)	1653.8946	0.894619	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		86.669	79.153	3	4.0901E-07	43524	160513_QHF_FH_JSI11Kac_6	106.14	91.181			0.48792	0.52007	177.69	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5223	1.827	NaN	1	0	Median	0.15639	0.14804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	515180000	389210000	125970000	0	0	0	95680000	44666000	51014000	419500000	344540000	74955000	0	0	0	32612	1630	30868	201960;201961	273011;273012;273013	273012	1647		3	
LMHFVNSLHNYIMTR	0	Oxidation (M)	1890.9233	0.92329336	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			68.136	60.375	3	0.013341	33133	160513_QHF_FH_JSI10Kac_6	34.382	27.965			1.1779	1.417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1779	1.417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20142000	10311000	9831200	0	0	0	20142000	10311000	9831200	0	0	0	0	0	0	32613	4228	30869	201962	273014;273015	273014		2417	2	
LMHFVNSLHNYIMTR	0	Unmodified	1874.9284	0.92837874	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			72.839	65.373	3;4	4.935E-07	35862	160513_QHF_FH_JSI10Kac_6	150.39	132.9			0.81222	0.96105	65.96	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.81222	0.96105	65.96	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	265830000	132010000	133820000	0	0	0	265830000	132010000	133820000	0	0	0	0	0	0	32614	4228	30869	201963;201964;201965	273016;273017;273018	273016			3	
LMHLTSEELNPNPDK	1	Unmodified	1736.8403	0.84033482	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.55		9	4						1	2	3	4	5	48.312	46.811	2;3	4.0964E-15	41270	160511_QHF_FH_JSI11i_3	197.31	174.44			1.0841	1.036	22.004	11	4	Median	1.1451	0.97493	NaN	1	0	Median	0.75998	0.91565	35.892	3	2	Median	1.1239	1.0389	1.8078	3	0	Plateau	0.97046	1.0295	24.16	4	2	Median	1604800000	797710000	807100000	150690000	74528000	76157000	256890000	151330000	105560000	427920000	179660000	248260000	769320000	392190000	377120000	32615	4225	30870	201966;201967;201968;201969;201970;201971;201972;201973;201974;201975;201976;201977;201978;201979	273019;273020;273021;273022;273023;273024;273025;273026;273027;273028;273029;273030;273031;273032;273033;273034;273035;273036;273037;273038	273020			20	
LMHLTSEELNPNPDK	1	Oxidation (M)	1752.8352	0.83524944	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	36.997	36.834	3	0.00080283	31310	160511_QHF_FH_JSI12i_3	67.234	55.964			1.0434	1.0272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0434	1.0272	NaN	1	1	Median	27584000	13895000	13689000	0	0	0	0	0	0	0	0	0	27584000	13895000	13689000	32616	4225	30870	201980;201981	273039;273040	273039		2416	2	
LMHLVVESFPSYR	0	Unmodified	1576.8072	0.8071842	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	74.702	67.899	2;3	3.5151E-09	37216	160513_QHF_FH_JSI10Kac_6	150.1	126.07			0.92788	0.83191	31.819	9	3	Median	0.97993	0.83191	19.002	3	0	Median	0.61705	0.71875	45.969	3	2	Median	0.90882	0.88046	15.655	2	1	Median	0.92788	0.97895	NaN	1	0	Median	553380000	263780000	289600000	125000000	55823000	69179000	210680000	118080000	92604000	140710000	56576000	84135000	76982000	33300000	43682000	32617	2952	30871	201982;201983;201984;201985;201986;201987;201988;201989;201990;201991	273041;273042;273043;273044;273045;273046;273047;273048;273049;273050;273051;273052	273052			12	
LMHQAALLGQALQDSR	0	Oxidation (M)	1766.9098	0.90975179	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	6	2	1	1	51.592	49.24	2;3	1.3229E-11	40597	160511_QHF_FH_JSI9i_3	102.29	84.428			0.77674	0.85908	16.962	5	2	Median	1.0448	0.85908	NaN	1	0	Median	0.85359	1.0014	18.301	2	1	Median	0.74676	0.72354	NaN	1	1	Median	0.77674	0.79603	NaN	1	0	Median	381360000	190870000	190490000	25667000	10052000	15615000	241250000	110060000	131190000	63997000	39882000	24115000	50454000	30880000	19574000	32618	2778	30872	201992;201993;201994;201995;201996;201997;201998;201999;202000;202001	273053;273054;273055;273056;273057;273058;273059;273060;273061;273062;273063;273064	273059		2138	12	
LMHQAALLGQALQDSR	0	Unmodified	1750.9148	0.91483717	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.8	0.4		1	4							2	3			59.704	58.303	2;3	3.3804E-22	47702	160511_QHF_FH_JSI9i_3	212.95	194.21			1.3917	1.2107	45.13	5	1	Median	1.4201	1.1477	2.6834	2	0	Median	1.0525	1.2107	54.69	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1566400000	744560000	821860000	887630000	400630000	486990000	678790000	343930000	334860000	0	0	0	0	0	0	32619	2778	30872	202002;202003;202004;202005;202006	273065;273066;273067;273068;273069;273070;273071;273072;273073	273069			9	
LMHSSSLTNSSIPR	0	Oxidation (M)	1544.7617	0.76169057	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			26.213	24.889	3	0.00066607	20094	160511_QHF_FH_JSI9i_3	71.548	57.29			1.181	1.1258	60.47	2	2	Median	2.1826	1.7264	NaN	1	1	Median	0.63899	0.7341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43479000	15986000	27493000	30177000	7052500	23124000	13302000	8934000	4368400	0	0	0	0	0	0	32620	2273	30873	202007;202008	273074;273075	273075		1874	2	
LMHSSSLTNSSIPR	0	Unmodified	1528.7668	0.76677595	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			32.955	31.543	2;3	4.1788E-06	25642	160511_QHF_FH_JSI9i_3	119.21	106.59			0.83405	0.78981	29.656	3	3	Plateau	0.76302	0.61613	35.12	2	2	Median	0.70145	0.81585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	271780000	141930000	129850000	149370000	71755000	77620000	122410000	70179000	52228000	0	0	0	0	0	0	32621	2273	30873	202009;202010;202011	273076;273077;273078	273077			3	
LMHVAYEEFEK	1	Unmodified	1394.654	0.6540376	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.55		9	4						1	2	3	4	5	50.069	48.766	2;3	1.3349E-05	42913	160511_QHF_FH_JSI11i_3	107.21	78.044			0.86226	0.90578	53.871	14	4	Median	1.0366	0.89609	3.5443	2	0	Median	0.85244	1.0354	102.87	3	1	Plateau	0.97845	0.96323	13.838	4	1	Median	0.80955	0.808	49.484	5	2	Median	1793900000	873770000	920150000	181530000	72872000	108660000	344560000	179680000	164880000	751560000	336750000	414810000	516270000	284470000	231800000	32622	2517	30874	202012;202013;202014;202015;202016;202017;202018;202019;202020;202021;202022;202023;202024;202025	273079;273080;273081;273082;273083;273084;273085;273086;273087;273088;273089;273090;273091;273092;273093;273094;273095;273096;273097;273098;273099;273100;273101	273081			23	
LMIEMDGTENK	1	Oxidation (M)	1295.5737	0.57373837	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	5.64	6	5	5			9	3			6	8	6	8	37.411	32.358	2	3.0654E-11	6134	160513_QHF_FH_JSI9Kac_3	138.66	130.44			1.0117	1.0487	36.531	26	3	Median	1.184	0.97947	55.106	5	2	Median	0.90775	1.0716	34.549	8	0	Median	0.80185	1.1218	18.639	6	0	Linear	0.98847	1.0639	17.608	7	1	Median	5778500000	3184200000	2594300000	1191500000	557400000	634150000	1868900000	1035800000	833130000	1264000000	718700000	545300000	1454000000	872310000	581730000	32623	854	30875	202026;202027;202028;202029;202030;202031;202032;202033;202034;202035;202036;202037;202038;202039;202040;202041;202042;202043;202044;202045;202046;202047;202048;202049;202050;202051;202052;202053	273102;273103;273104;273105;273106;273107;273108;273109;273110;273111;273112;273113;273114;273115;273116;273117;273118;273119;273120;273121;273122;273123;273124;273125;273126;273127;273128;273129;273130;273131;273132;273133;273134;273135;273136;273137;273138;273139;273140;273141;273142	273120		380;381	41	
LMIEMDGTENK	1	Unmodified	1279.5788	0.57882375	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.15	8	4	4			2	2	1	3	6	8	5	5	50.558	46.417	2	1.099E-37	42411	160511_QHF_FH_JSI9i_2	200.05	180.95			1.0293	0.98225	34.788	24	9	Median	1.094	0.94271	51.093	6	1	Median	0.87632	1.0489	34.352	8	3	Median	1.1035	1.1334	28.432	5	3	Median	0.96233	0.9837	27.186	5	2	Median	71394000000	35949000000	35445000000	8832000000	4025900000	4806200000	20163000000	10222000000	9941200000	19188000000	10107000000	9080500000	23211000000	11594000000	11617000000	32624	854	30875	202054;202055;202056;202057;202058;202059;202060;202061;202062;202063;202064;202065;202066;202067;202068;202069;202070;202071;202072;202073;202074;202075;202076;202077	273143;273144;273145;273146;273147;273148;273149;273150;273151;273152;273153;273154;273155;273156;273157;273158;273159;273160;273161;273162;273163;273164;273165;273166;273167;273168;273169;273170;273171;273172;273173;273174;273175;273176;273177;273178;273179;273180;273181;273182;273183;273184;273185;273186;273187;273188;273189;273190;273191;273192;273193	273179			50	
LMIEMDGTENK	1	2 Oxidation (M)	1311.5687	0.56865299	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	4.16	1				1	5				1	3	2	1	30.142	20.074	2	3.0456E-05	5826	160513_QHF_FH_JSI9Kac_3	91.584	68.844			1.0617	1.1271	12.078	6	0	Median	1.0659	0.87099	NaN	1	0	Median	0.97545	1.1616	5.8049	3	0	Median	1.0882	1.078	NaN	1	0	Median	1.0593	1.1632	NaN	1	0	Median	163770000	78422000	85347000	80586000	37721000	42865000	27041000	12862000	14178000	24288000	11132000	13156000	31854000	16707000	15147000	32625	854	30875	202078;202079;202080;202081;202082;202083;202084	273194;273195;273196;273197;273198;273199;273200;273201	273197		380;381	8	
LMILTVTQK	1	Unmodified	1045.6206	0.62055263	4696	Q9H3L0	MMADHC	Methylmalonic aciduria and homocystinuria type D protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	69.654	61.084	2	0.00057096	33503	160513_QHF_FH_JSI10Kac_6	92.439	57.632			0.68375	0.73311	38.94	2	0	Median	NaN	NaN	NaN	0	0	Median	0.46675	0.55666	NaN	1	0	Median	1.0017	0.9655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36429000	19412000	17017000	0	0	0	17576000	11942000	5634500	18852000	7469600	11383000	0	0	0	32626	4696	30876	202085;202086;202087	273202;273203;273204	273204			3	
LMITHIVNQNFK	1	Unmodified	1456.7861	0.78605483	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.42			11						8	4	4	5	6	62.843	58.441	2;3	1.0982E-61	32012	160513_QHF_FH_JSI10Kac_6	219.7	154.48			0.99743	0.90148	33.775	18	5	Median	1.1447	0.94481	10.479	4	0	Median	0.66119	0.77477	6.708	4	0	Median	0.95435	0.92721	42.171	5	2	Median	1.0425	1.1526	47.118	5	3	Median	3787900000	1981900000	1806000000	749940000	329920000	420020000	1075500000	645390000	430140000	1094100000	514400000	579730000	868280000	492170000	376100000	32627	4989	30877	202088;202089;202090;202091;202092;202093;202094;202095;202096;202097;202098;202099;202100;202101;202102;202103;202104;202105;202106	273205;273206;273207;273208;273209;273210;273211;273212;273213;273214;273215;273216;273217;273218;273219;273220;273221;273222;273223;273224;273225;273226;273227;273228;273229;273230;273231;273232;273233;273234;273235;273236;273237;273238	273236			34	
LMITHIVNQNFK	1	Oxidation (M)	1472.781	0.78096945	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	5	1	2	3	55.473	53.129	2;3	2.4859E-06	28141	160513_QHF_FH_JSI9Kac_6	113.22	88.365			0.82306	0.76343	37.058	7	3	Median	0.9397	0.79142	21.431	3	2	Median	0.59731	0.67978	NaN	1	0	Median	0.82306	0.76343	NaN	1	0	Median	1.0248	1.0902	68.833	2	1	Median	204710000	102770000	101940000	84708000	42295000	42413000	34118000	15812000	18306000	35416000	15571000	19845000	50469000	29089000	21380000	32628	4989	30877	202107;202108;202109;202110;202111;202112;202113;202114;202115;202116;202117	273239;273240;273241;273242;273243;273244;273245;273246;273247	273245		2569	7	
LMITYTRK	1	Unmodified	1024.5739	0.57393679	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			15.696	14.703	3	0.032102	11589	160511_QHF_FH_JSI9i_3	24.923	8.72			0.82833	0.79317	85.288	2	0	Median	1.7785	1.4497	NaN	1	0	Median	0.38578	0.43397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66043000	30003000	36040000	43108000	13251000	29856000	22936000	16752000	6183800	0	0	0	0	0	0	32629	5744	30878	202118;202119	273248	273248			1	
LMIWDTR	0	Oxidation (M)	949.46914	0.46913736	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	6.29	6.16		3	2						2	1		3	3	51.554	49.371	2	0.0086267	25566	160513_QHF_FH_JSI12Kac_6	81.784	67.371			0.97311	1.4312	58.451	6	0	Linear	1.0555	0.89196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0705	1.0445	17.973	2	0	Median	1.3108	1.4049	86.757	3	0	Plateau	509730000	222890000	286830000	71814000	30591000	41223000	0	0	0	193450000	88293000	105160000	244460000	104010000	140450000	32630	2283;2741	30879	202120;202121;202122;202123;202124;202125;202126	273249;273250;273251;273252;273253;273254	273254		1879	6	
LMIWDTR	0	Unmodified	933.47422	0.47422274	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.55	1	4	4				1	3	4	3	5	5	4	64.187	59.116	2	3.3056E-05	31948	160513_QHF_FH_JSI11Kac_6	135.87	74.86			1.0251	1.0174	9.8284	17	0	Median	1.1929	1.0073	6.3956	3	0	Median	0.88369	1.0174	10.093	5	0	Median	1.0941	1.0413	10.447	5	0	Median	0.93672	1.0154	14.313	4	0	Median	7978900000	3937700000	4041200000	1134400000	514200000	620170000	1976100000	1057700000	918440000	2584000000	1282300000	1301800000	2284400000	1083600000	1200800000	32631	2283;2741	30879	202127;202128;202129;202130;202131;202132;202133;202134;202135;202136;202137;202138;202139;202140;202141;202142;202143	273255;273256;273257;273258;273259;273260;273261;273262;273263;273264;273265;273266;273267;273268;273269;273270;273271;273272;273273;273274;273275;273276;273277;273278;273279;273280;273281;273282;273283;273284;273285;273286;273287	273263			33	
LMKEILDK	2	Acetyl (K);Oxidation (M)	1046.5682	0.56818271	898;2869	P08238;Q58FF7;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4	no	no	1	0	1	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		51.19	40.63	2	0.019416	23786	160513_QHF_FH_JSI11Kac_4	51.872	17.62			0.24367	0.23904	108.66	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3977	1.657	NaN	1	0	Median	0.26115	0.25795	23.48	2	0	Median	NaN	NaN	NaN	0	0	Median	63569000	47369000	16200000	0	0	0	5574900	2019200	3555600	57994000	45350000	12644000	0	0	0	32632	898;2869	30880	202144;202145;202146	273288;273289	273288	644;2702	470	2	
LMKEILDK	2	Acetyl (K)	1030.5733	0.57326808	898;2869	P08238;Q58FF7;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.8						1	1	3			2	1	2	61.846	51.358	2	0.0010795	27912	160513_QHF_FH_JSI11Kac_5	107.15	37.956			45.745	53.58	446.46	5	4	Median	NaN	NaN	NaN	0	0	Median	79.06	93.616	78.916	2	2	Median	0.11937	0.11723	NaN	1	0	Median	0.94774	1.0284	656.33	2	2	Median	161220000	95999000	65218000	0	0	0	24818000	270430	24547000	101920000	78221000	23694000	34484000	17507000	16976000	32633	898;2869	30880	202147;202148;202149;202150;202151	273290;273291;273292;273293;273294	273292	644;2702		5	
LMKHDVNLGR	1	Acetyl (K)	1223.6445	0.64447597	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.911	30.367	3	0.0071917	16725	160513_QHF_FH_JSI11Kac_6	56.225	32.849			0.032845	0.032206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.032845	0.032206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20745000	20163000	581150	0	0	0	0	0	0	20745000	20163000	581150	0	0	0	32634	3101	30881	202152	273295	273295	2771		1	
LMKICMNEDPAK	2	Acetyl (K)	1490.6931	0.693142	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			65.679	54.981	2	0.061003	29830	160513_QHF_FH_JSI10Kac_4	47.938	41.085			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	632100	632100	0	0	0	0	632100	632100	0	0	0	0	0	0	0	32635	2403	30882	202153	273296	273296			1	
LMLAQDEER	0	Unmodified	1103.5281	0.5281088	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									1	2	2	29.782	29.101	2	0.00081194	24453	160511_QHF_FH_JSI12i_2	73.665	48.742			1.3457	1.2888	30.748	5	2	Median	NaN	NaN	NaN	0	0	Median	1.6693	2.0713	NaN	1	1	Median	1.136	1.1036	21.945	2	0	Median	1.2598	1.3575	25.633	2	1	Median	288580000	126610000	161970000	0	0	0	61114000	21010000	40104000	101390000	48930000	52464000	126080000	56672000	69405000	32636	344	30883	202154;202155;202156;202157;202158	273297;273298;273299;273300;273301	273298			5	
LMLAVVK	1	Unmodified	772.48808	0.48808189	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	56.914	52.686	2	0.0017517	27978	160513_QHF_FH_JSI9Kac_5	85.306	85.306			1.0085	0.98747	12.73	13	1	Median	1.102	0.95358	13.092	3	0	Median	0.8086	0.9611	17.824	4	1	Median	1.0506	1.0075	11.242	3	0	Median	0.98961	1.0673	8.7315	3	0	Median	2686900000	1402900000	1284000000	482030000	231040000	250980000	706410000	416790000	289620000	900370000	468630000	431740000	598060000	286430000	311630000	32637	891	30884	202159;202160;202161;202162;202163;202164;202165;202166;202167;202168;202169;202170;202171;202172	273302;273303;273304;273305;273306;273307;273308;273309;273310;273311;273312;273313;273314;273315;273316;273317;273318;273319;273320;273321;273322;273323;273324	273307			23	
LMLAVVK	1	Oxidation (M)	788.483	0.48299651	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.639							1	4	2	2	2	1	2	55.335	45.19	2	0.035681	23074	160513_QHF_FH_JSI10Kac_5	54.525	54.525			0.9452	0.95899	13.564	7	0	Median	1.1881	1.0068	14.071	2	0	Median	0.92267	1.0977	2.2289	2	0	Median	0.97772	0.95899	NaN	1	0	Median	0.76321	0.82032	2.2617	2	0	Median	57248000	27448000	29800000	20997000	8534700	12463000	19128000	9639100	9489000	10295000	5625700	4669700	6826900	3648500	3178400	32638	891	30884	202173;202174;202175;202176;202177;202178;202179	273325;273326	273326			2	
LMLDGDRNK	1	Unmodified	1060.5335	0.53352853	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		5	10							4	4	5	2	17.408	16.908	2;3	5.1923E-08	13402	160511_QHF_FH_JSI12i_3	153.71	119.97			0.97229	1.0481	69.488	14	3	Median	2.1485	1.7657	44.94	3	0	Median	0.85896	1.0494	63.564	4	0	Median	1.1707	1.1989	100.69	5	3	Median	0.7357	0.74847	17.041	2	0	Median	6131700000	2728000000	3403600000	334020000	112550000	221470000	1236900000	602160000	634760000	3111800000	1240700000	1871100000	1448900000	772640000	676230000	32639	1039	30885	202180;202181;202182;202183;202184;202185;202186;202187;202188;202189;202190;202191;202192;202193;202194	273327;273328;273329;273330;273331;273332;273333;273334;273335;273336;273337;273338;273339;273340;273341;273342;273343;273344	273342			18	
LMLDLNK	1	Unmodified	845.46807	0.46807473	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	52.283	51.513	2	0.0020203	45412	160511_QHF_FH_JSI10i_2	114.02	49.247			1.103	1.1538	16.206	7	1	Median	1.7931	1.5239	NaN	1	0	Median	0.94434	1.137	1.9149	2	0	Median	1.2181	1.1782	10.524	2	0	Median	1.2942	1.3792	25.234	2	1	Median	861120000	384140000	476990000	139030000	56416000	82611000	221500000	111140000	110360000	276170000	124530000	151640000	224430000	92055000	132380000	32640	1848	30886	202195;202196;202197;202198;202199;202200;202201	273345;273346;273347;273348;273349;273350;273351;273352;273353	273352			9	
LMLDLNKAK	2	Acetyl (K);Oxidation (M)	1102.6056	0.60563084	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.484							3	5			2	4	2	66.63	55.79	2	0.013112	28058	160513_QHF_FH_JSI12Kac_5	48.794	30.354			0.78567	0.90641	42.872	8	1	Median	NaN	NaN	NaN	0	0	Median	0.79862	0.95335	8.2239	2	0	Median	0.75067	0.73599	58.078	4	1	Median	0.75429	0.84169	11.559	2	0	Median	72152000	40060000	32093000	0	0	0	19960000	11139000	8821500	36634000	19910000	16724000	15558000	9011400	6546900	32641	1848	30887	202202;202203;202204;202205;202206;202207;202208;202209	273354;273355;273356;273357	273356	1859	1532	3	
LMLDLNKAK	2	Acetyl (K)	1086.6107	0.61071622	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	72.218	61.534	2	0.00022009	30556	160513_QHF_FH_JSI12Kac_5	105.57	62.321			0.99479	1.1429	29.577	6	0	Median	NaN	NaN	NaN	0	0	Median	0.78086	0.93051	16.191	2	0	Median	1.2596	1.2441	50.695	2	0	Median	1.2121	1.3343	8.9975	2	0	Median	106450000	52043000	54402000	0	0	0	30239000	16467000	13771000	36002000	18093000	17910000	40204000	17483000	22721000	32642	1848	30887	202210;202211;202212;202213;202214;202215	273358;273359;273360;273361;273362;273363	273360	1859		6	
LMLESQEFDHFLATK	1	Unmodified	1807.8815	0.88147135	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			83.847	83.223	3	3.2252E-06	73468	160511_QHF_FH_JSI9i_2	103.39	91.867			1.1851	1.2181	57.36	2	1	Median	0.93666	0.81195	NaN	1	0	Median	1.4994	1.8273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88815000	42060000	46756000	34016000	18209000	15807000	54799000	23851000	30949000	0	0	0	0	0	0	32643	4117	30888	202216;202217	273364;273365;273366;273367	273365			4	
LMLFGSIFR	0	Unmodified	1082.5947	0.59467223	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	90.388	82.079	2	1.5455E-07	47477	160513_QHF_FH_JSI10Kac_6	143.12	113.55			0.97019	1.1476	15.105	4	0	Linear	1.0796	0.91531	NaN	1	0	Median	0.96661	1.1405	NaN	1	0	Median	1.2282	1.1547	NaN	1	0	Median	1.2415	1.3179	NaN	1	0	Median	627070000	318760000	308310000	160220000	66055000	94161000	225720000	126700000	99026000	138890000	84082000	54805000	102250000	41926000	60321000	32644	3087	30889	202218;202219;202220;202221	273368;273369;273370	273370			3	
LMLISMANDLK	1	Unmodified	1247.6618	0.66176551	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	3	2	2	84.533	83.306	2	2.0163E-05	74873	160511_QHF_FH_JSI10i_2	103.01	66.61			0.7141	0.79174	33.375	9	4	Median	0.84547	0.71536	46.909	2	1	Median	0.76663	0.92009	30.416	3	1	Plateau	0.54965	0.54024	54.569	2	1	Median	0.66381	0.70356	16.699	2	1	Median	522180000	340970000	181210000	38441000	21084000	17357000	146390000	89450000	56938000	157420000	109520000	47897000	179930000	120920000	59015000	32645	5565	30890	202222;202223;202224;202225;202226;202227;202228;202229;202230	273371;273372;273373;273374;273375;273376;273377;273378;273379;273380;273381	273379			11	
LMLLDATFR	0	Unmodified	1078.5845	0.58450147	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		81.464	80.844	2	0.0096401	71115	160511_QHF_FH_JSI11i_2	51.346	30.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32646	3122	30891	202231	273382	273382			1	
LMLLESWR	0	Unmodified	1046.5583	0.55828672	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	77.919	77.371	2	0.044814	67259	160511_QHF_FH_JSI12i_3	38.419	18.782			1.1171	1.1249	9.5748	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98675	1.1249	NaN	1	0	Median	1.0399	0.96755	NaN	1	0	Median	1.1265	1.1557	NaN	1	0	Median	93143000	40616000	52527000	0	0	0	13953000	6641500	7311800	28817000	11230000	17586000	50373000	22744000	27629000	32647	4566	30892	202232;202233;202234	273383	273383			1	
LMLLHIK	1	Unmodified	866.54118	0.54118009	4329	Q99943	AGPAT1	1-acyl-sn-glycerol-3-phosphate acyltransferase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	2	3	1	56.739	52.932	3	0.0032911	44878	160511_QHF_FH_JSI12i_3	62.714	47.275			1.1455	0.99698	30.283	8	2	Median	1.1455	0.96507	3.4679	2	0	Median	0.80202	0.93461	10.27	2	0	Median	1.2097	1.1885	49.985	3	2	Median	1.2289	1.1554	NaN	1	0	Median	169910000	82670000	87241000	39702000	16952000	22750000	49037000	29145000	19892000	49710000	22769000	26941000	31463000	13805000	17658000	32648	4329	30893	202235;202236;202237;202238;202239;202240;202241;202242	273384;273385;273386;273387;273388;273389;273390;273391;273392;273393;273394;273395	273393			12	
LMLLLEVISGER	0	Unmodified	1371.7796	0.77957246	361;1021	O43707;Q08043;P12814;P35609	ACTN4;ACTN3;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2	no	no	0	0	0	0		By MS/MS			16	0									1		1			95.819	90.098	2	1.5086E-06	52048	160513_QHF_FH_JSI10Kac_6	115.18	66.379			2.6647	3.1762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6647	3.1762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76091000	20565000	55526000	0	0	0	76091000	20565000	55526000	0	0	0	0	0	0	32649	361;1021	30894	202243	273396	273396			1	
LMLPPPPLTASGVFSK	1	Unmodified	1653.9164	0.9164003	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	98.774	98.784	2;3	0.0015217	85470	160511_QHF_FH_JSI12i_3	58.814	47.443			1.75	1.7317	22.654	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6505	1.5387	29.151	2	2	Median	1.7616	1.8258	19.927	2	2	Median	67276000	25719000	41557000	0	0	0	0	0	0	32538000	12141000	20397000	34738000	13578000	21160000	32650	1148	30895	202244;202245;202246;202247	273397;273398;273399;273400	273399			4	
LMLSTSEYSQSPK	1	Unmodified	1469.7072	0.70719538	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1.67	0.471	1	2											3	46.45	45.426	2	4.9692E-05	38832	160511_QHF_FH_JSI12i_2	77.64	63.734			1.1973	1.2865	16.48	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1973	1.2865	16.48	2	2	Median	53544000	24434000	29110000	0	0	0	0	0	0	0	0	0	53544000	24434000	29110000	32651	2320	30896	202248;202249;202250	273401;273402;273403;273404	273402			4	
LMLWDTAGQEEFDAITK	1	Unmodified	1966.9346	0.93462914	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			99.657	99.557	2	0.0012139	88170	160511_QHF_FH_JSI10i_2	68.809	45.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4291600	4291600	0	0	0	0	4291600	4291600	0	0	0	0	0	0	0	32652	5394	30897	202251	273405	273405			1	
LMMDPLSGQNR	0	Unmodified	1260.5955	0.59547686	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	54.488	53.627	2	9.1367E-06	47155	160511_QHF_FH_JSI9i_2	108.81	89.021			1.0996	1.1597	13.069	8	4	Median	1.3062	1.1165	20.589	2	1	Median	1.0833	1.2893	6.678	2	1	Median	1.1558	1.1621	14.02	2	1	Median	0.9619	1.0405	7.0278	2	1	Median	1885800000	873930000	1011900000	292860000	121370000	171480000	405870000	199210000	206660000	754130000	332470000	421660000	432990000	220880000	212110000	32653	326	30898	202252;202253;202254;202255;202256;202257;202258;202259	273406;273407;273408;273409;273410;273411;273412;273413;273414;273415;273416;273417	273413			12	
LMMDPLTGLNR	0	Unmodified	1259.6366	0.6366134	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	2	2	2	75.571	74.711	2	2.1411E-09	64610	160511_QHF_FH_JSI12i_2	131.06	77.895			0.92621	0.97556	11.139	8	1	Median	1.1828	0.98049	3.3897	2	0	Median	0.81533	0.97556	2.2474	2	0	Median	1.113	1.1275	11.245	2	0	Median	0.8036	0.86396	3.8794	2	1	Median	3495300000	1698400000	1796900000	675930000	292570000	383350000	841910000	440020000	401890000	1413600000	667510000	746110000	563870000	298300000	265570000	32654	423	30899	202260;202261;202262;202263;202264;202265;202266;202267	273418;273419;273420;273421;273422;273423;273424;273425;273426;273427;273428;273429	273420			12	
LMMILAMNEK	1	Unmodified	1192.6018	0.6018078	1845	P55061	TMBIM6	Bax inhibitor 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.073	75.796	2	0.013734	65826	160511_QHF_FH_JSI12i_3	53.493	37.291			0.30938	0.33236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30938	0.33236	NaN	1	1	Median	19976000	14495000	5481000	0	0	0	0	0	0	0	0	0	19976000	14495000	5481000	32655	1845	30900	202268	273430	273430			1	
LMMLQHK	1	Unmodified	899.47211	0.47211425	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			3							1			2	23.553	23.1	2;3	0.0013272	18897	160511_QHF_FH_JSI12i_3	91.584	82.37			1.2431	1.2746	91.708	3	0	Median	5.3317	4.3752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9466	0.96379	39.531	2	0	Median	227740000	103690000	124050000	47058000	9520300	37537000	0	0	0	0	0	0	180680000	94169000	86515000	32656	3276	30901	202269;202270;202271	273431;273432;273433	273432			3	
LMMLQSCSGPTCR	0	Unmodified	1539.6666	0.66660967	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			47.448	45.882	2	0.0072596	38331	160511_QHF_FH_JSI10i_3	58.978	41.114			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32657	1081	30902	202272	273434	273434			1	
LMMNQLEEDLVSARR	0	Oxidation (M)	1819.8921	0.89205282	177	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	94.577	94.575	3	0.02694	81992	160511_QHF_FH_JSI12i_3	31.827	7.2688			1.1786	1.1558	28.166	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4859	1.4105	NaN	1	0	Median	0.93484	0.9471	NaN	1	0	Median	59554000	24678000	34876000	0	0	0	0	0	0	24842000	9336600	15505000	34712000	15341000	19371000	32658	177	30903	202273;202274	273435	273435			1	
LMMSELENR	0	Unmodified	1121.5209	0.52091494	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.29	44.314	2	0.0045615	38089	160511_QHF_FH_JSI11i_2	56.721	48.781			0.98953	1.0083	8.7133	4	0	Median	1.1595	0.98405	NaN	1	0	Median	0.83898	1.0332	NaN	1	0	Median	1.1489	1.1508	NaN	1	0	Median	0.8523	0.93913	NaN	1	0	Median	281030000	146490000	134540000	52188000	30621000	21567000	66439000	32959000	33480000	103640000	54024000	49617000	58758000	28883000	29875000	32659	1287	30904	202275;202276;202277;202278	273436;273437;273438	273437			3	
LMNDMTAVALNYGIYK	1	Unmodified	1815.8899	0.88992755	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	3.53	7	8							1	2	3	5	6	87.854	87.333	2;3	7.354E-30	77524	160511_QHF_FH_JSI10i_2	185.59	160.74			0.92384	0.93515	26.714	14	3	Median	0.91994	0.79335	11.697	2	0	Median	0.72119	0.87673	14.753	3	0	Median	1.1287	1.1394	25.252	4	1	Median	0.92733	0.94892	32.274	5	2	Median	627780000	325090000	302690000	119400000	65591000	53807000	135610000	71569000	64041000	188490000	83026000	105460000	184280000	104900000	79380000	32660	3852	30905	202279;202280;202281;202282;202283;202284;202285;202286;202287;202288;202289;202290;202291;202292;202293;202294	273439;273440;273441;273442;273443;273444;273445;273446;273447;273448;273449;273450;273451;273452;273453;273454;273455;273456	273454			17	
LMNEDPMYSMYAK	1	Unmodified	1591.6721	0.6720722	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	61.99	61.316	2	1.3813E-12	54307	160511_QHF_FH_JSI10i_2	125.22	110.24			0.88262	1.2731	47.954	6	1	Linear	1.6027	1.3525	61.332	2	1	Median	1.2179	1.4392	NaN	1	0	Median	1.1824	1.1876	85.243	2	0	Median	1.0614	1.1262	NaN	1	0	Median	477590000	218470000	259120000	121670000	51630000	70035000	95988000	34979000	61009000	154680000	73726000	80950000	105260000	58134000	47130000	32661	3883	30906	202295;202296;202297;202298;202299;202300;202301	273457;273458;273459;273460;273461;273462;273463;273464;273465;273466;273467	273467			11	
LMNESLMLVTALNPHIGYDK	1	Unmodified	2258.1439	0.14391041	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	6.11		11	5						6	6	5	7	4	96.54	94.022	2;3;4	1.7932E-19	88077	160511_QHF_FH_JSI10i_2	166.29	157			0.95292	0.99406	31.828	21	7	Median	1.1412	0.99029	33.889	6	3	Median	0.7297	0.90673	12.545	5	1	Median	1.0197	1.0049	48.199	6	2	Median	0.95304	1.0121	5.1105	4	1	Median	3969200000	1894500000	2074700000	932650000	444600000	488060000	1083800000	564750000	519050000	1204900000	509550000	695330000	747890000	375590000	372300000	32662	887	30907	202302;202303;202304;202305;202306;202307;202308;202309;202310;202311;202312;202313;202314;202315;202316;202317;202318;202319;202320;202321;202322;202323	273468;273469;273470;273471;273472;273473;273474;273475;273476;273477;273478;273479;273480;273481;273482;273483;273484;273485;273486;273487;273488;273489;273490;273491;273492;273493;273494;273495;273496;273497;273498;273499;273500;273501;273502;273503;273504;273505;273506	273498			39	
LMNESLMLVTALNPHIGYDK	1	Oxidation (M)	2274.1388	0.13882503	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.85		5	1						1	1	1	3	2	90.353	88.633	3	3.2935E-09	80200	160511_QHF_FH_JSI10i_2	111.4	95.81			0.95059	1.0393	19.092	7	3	Median	1.2596	1.0393	NaN	1	0	Median	0.95059	1.1713	NaN	1	0	Median	0.87691	0.8694	22.152	3	2	Median	1.021	1.0694	24.172	2	1	Median	300940000	160810000	140130000	25765000	16829000	8936700	46332000	23847000	22485000	153050000	82582000	70470000	75793000	37552000	38242000	32663	887	30907	202324;202325;202326;202327;202328;202329;202330	273507;273508;273509;273510;273511;273512;273513;273514;273515;273516;273517;273518	273516		446;447	12	
LMNESLMLVTALNPHIGYDK	1	2 Oxidation (M)	2290.1337	0.13373965	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	2	0				By MS/MS	3	0			1										1	84.164	83.973	3	0.005039	72935	160511_QHF_FH_JSI12i_3	44.788	36.288			1.0675	1.1512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0675	1.1512	NaN	1	1	Median	11517000	4343900	7173200	0	0	0	0	0	0	0	0	0	11517000	4343900	7173200	32664	887	30907	202331	273519	273519		446;447	1	
LMNETTAVALAYGIYK	1	Unmodified	1756.907	0.90695782	1417;723	P34932;O95757	HSPA4;HSPA4L	Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	6.38	6	9	5						8	6	8	8	6	87.432	84.598	2;3	2.6784E-103	41577	160513_QHF_FH_JSI9Kac_6	246.05	212.99			0.89128	0.92397	17.118	25	7	Median	0.93816	0.8137	15.358	6	3	Median	0.69357	0.84045	9.2674	8	3	Median	1.0149	0.9868	18.262	6	1	Median	1.0028	1.0411	8.1534	5	0	Median	4198800000	2229400000	1969400000	1229600000	625890000	603740000	1400600000	826830000	573750000	1001400000	479770000	521650000	567180000	296940000	270240000	32665	1417;723	30908	202332;202333;202334;202335;202336;202337;202338;202339;202340;202341;202342;202343;202344;202345;202346;202347;202348;202349;202350;202351;202352;202353;202354;202355;202356;202357;202358;202359	273520;273521;273522;273523;273524;273525;273526;273527;273528;273529;273530;273531;273532;273533;273534;273535;273536;273537;273538;273539;273540;273541;273542;273543;273544;273545;273546;273547;273548;273549;273550;273551;273552;273553;273554;273555;273556;273557;273558;273559;273560;273561;273562;273563;273564;273565;273566;273567;273568;273569;273570	273560			50	
LMNETTAVALAYGIYK	1	Oxidation (M)	1772.9019	0.90187244	1417;723	P34932;O95757	HSPA4;HSPA4L	Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.37		4						1	1	2	1	2	1	79.581	75.233	2	1.6158E-32	38603	160513_QHF_FH_JSI9Kac_6	168.31	145.78			0.94196	0.94582	8.24	5	3	Median	1.081	0.94582	NaN	1	0	Median	0.8885	1.0479	NaN	1	1	Median	0.9361	0.9054	4.6039	2	1	Median	0.94196	1.0662	NaN	1	1	Median	70494000	32094000	38399000	28214000	8523500	19690000	16115000	9379700	6735500	15508000	8759900	6748200	10657000	5431200	5225600	32666	1417;723	30908	202360;202361;202362;202363;202364;202365	273571;273572;273573;273574;273575	273575		250	5	
LMNFMYFQR	0	Unmodified	1248.5784	0.57837024	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	79.297	74.145	2	8.3007E-24	40196	160513_QHF_FH_JSI10Kac_6	182.13	169.09			0.9578	0.96156	14.735	7	0	Median	1.1678	0.98213	29.804	2	0	Median	0.81457	0.94107	3.0449	2	0	Median	1.1423	1.0887	NaN	1	0	Median	0.88137	0.92644	14.442	2	0	Median	1774700000	847150000	927540000	320570000	117980000	202600000	793350000	430880000	362470000	451220000	203300000	247920000	209540000	94994000	114550000	32667	3229	30909	202366;202367;202368;202369;202370;202371;202372	273576;273577;273578;273579;273580;273581;273582;273583;273584	273584			9	
LMNFMYFQR	0	Oxidation (M)	1264.5733	0.57328486	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	73.165	64.572	2	0.00047408	35936	160513_QHF_FH_JSI10Kac_6	91.626	79.779			0.94825	1.3382	18.676	10	2	Linear	1.3341	1.1699	27.322	3	1	Plateau	1.0128	1.2162	15.637	3	1	Plateau	0.92865	0.89849	24.428	2	0	Median	0.96375	1.0017	2.1603	2	0	Median	468140000	230130000	238010000	139810000	55577000	84229000	187840000	101210000	86635000	71504000	35312000	36193000	68985000	38036000	30950000	32668	3229	30909	202373;202374;202375;202376;202377;202378;202379;202380;202381;202382	273585;273586;273587;273588;273589;273590;273591;273592	273591		2228;2229	8	
LMNFMYFQR	0	2 Oxidation (M)	1280.5682	0.56819948	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	2	0	By MS/MS			By MS/MS	15.5	0.5								1	1	1			1	63.046	52.759	2	0.014714	27711	160513_QHF_FH_JSI12Kac_6	38.133	21.931			1.1357	1.0693	9.8775	2	0	Median	1.201	0.99719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.074	1.1467	NaN	1	0	Median	9656200	4245700	5410500	2195500	993900	1201600	0	0	0	0	0	0	7460700	3251800	4208900	32669	3229	30909	202383;202384	273593	273593		2228;2229	1	
LMNGTSWIEALMEK	1	Unmodified	1621.7844	0.78439985	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.69	101.51	2	0.057484	82433	160511_QHF_FH_JSI9i_3	43.502	19.159			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42503000	0	42503000	42503000	0	42503000	0	0	0	0	0	0	0	0	0	32670	3972	30910	202385	273594	273594			1	
LMNIAFNDMNPFR	0	Unmodified	1581.7432	0.74320373	4554	Q9BYX2	TBC1D2	TBC1 domain family member 2A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	96.347	96.355	2	9.7697E-05	85828	160511_QHF_FH_JSI11i_3	94.297	76.432			1.2742	1.2385	6.3649	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.41	1.2955	NaN	1	0	Median	1.1515	1.184	NaN	1	0	Median	46708000	21610000	25098000	0	0	0	0	0	0	21024000	8540200	12484000	25684000	13070000	12614000	32671	4554	30911	202386;202387;202388	273595;273596;273597	273595			3	
LMNLLQER	0	Unmodified	1015.5485	0.54845032	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.583	52.466	2	0.011896	45045	160511_QHF_FH_JSI12i_3	53.753	29.598			1.0047	0.97046	2.4671	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0616	0.98753	NaN	1	0	Median	0.95081	0.95367	NaN	1	0	Median	191100000	99369000	91733000	0	0	0	0	0	0	102300000	53875000	48423000	88804000	45494000	43310000	32672	2911	30912	202389;202390	273598	273598			1	
LMNLPLHSVK	1	Unmodified	1150.6532	0.65324974	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	50.272	49.373	3	3.3948E-06	43354	160511_QHF_FH_JSI11i_3	90.685	66.834			0.92691	0.97112	22.428	6	0	Median	0.95916	0.81581	25.004	2	0	Median	0.6703	0.79833	27.348	2	0	Median	1.196	1.1235	NaN	1	0	Median	1.0251	1.0294	NaN	1	0	Median	625990000	304040000	321950000	115040000	52386000	62651000	139470000	76718000	62749000	142550000	72732000	69815000	228940000	102210000	126730000	32673	4572	30913	202391;202392;202393;202394;202395;202396	273599;273600;273601;273602;273603;273604;273605;273606;273607;273608;273609	273599			11	
LMNNHQLELAK	1	Unmodified	1309.6813	0.6812554	4885	Q9NP73	ALG13	Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.423	30.423	3	5.3003E-05	26346	160511_QHF_FH_JSI11i_3	68.44	51.415			0.5531	0.51973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5531	0.51973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105480000	58347000	47131000	0	0	0	0	0	0	105480000	58347000	47131000	0	0	0	32674	4885	30914	202397	273610	273610			1	
LMNPDGTTLQDGRHDLVVYK	1	Unmodified	2271.1318	0.13176581	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	54.687	54.446	3;4	3.8622E-06	46780	160511_QHF_FH_JSI12i_3	80.752	68.089			1.0989	1.128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0989	1.128	NaN	1	0	Median	98118000	37266000	60852000	0	0	0	0	0	0	0	0	0	98118000	37266000	60852000	32675	4765	30915	202398;202399	273611;273612	273612			2	
LMNQMNAR	0	Unmodified	976.45826	0.4582551	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	14.72	14.415	2	0.00033343	11912	160511_QHF_FH_JSI10i_2	111.73	82.829			0.81249	0.83436	26.99	5	0	Median	1.1521	0.97688	NaN	1	0	Median	0.48326	0.59531	NaN	1	0	Median	0.74402	0.72829	39.548	2	0	Median	0.81249	0.83436	NaN	1	0	Median	726710000	412470000	314240000	117060000	58463000	58602000	133790000	89316000	44475000	275690000	168450000	107240000	200160000	96248000	103920000	32676	3175	30916	202400;202401;202402;202403;202404	273613;273614;273615;273616;273617;273618	273617			6	
LMNSQDDQGK	1	Unmodified	1134.4975	0.49753696	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	7.8429	7.6043	2	0.0027117	5310	160511_QHF_FH_JSI11i_1	58.23	30.406			0.81746	0.815	27.363	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69222	0.67162	NaN	1	0	Median	0.96536	0.98898	NaN	1	1	Median	85967000	54213000	31754000	0	0	0	0	0	0	52293000	33690000	18602000	33674000	20523000	13152000	32677	303	30917	202405;202406;202407	273619;273620;273621	273619			3	
LMPEIVATASK	1	Unmodified	1158.6318	0.63184559	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.309	56.806	2	0.00045219	49102	160511_QHF_FH_JSI11i_2	86.898	48.106			0.46053	0.46588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46053	0.46588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	167290000	80401000	86887000	0	0	0	0	0	0	167290000	80401000	86887000	0	0	0	32678	3860	30918	202408	273622	273622			1	
LMPELPQYDQDNLK	1	Unmodified	1702.8236	0.82362212	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	70.984	70.352	2	0.00041912	63945	160511_QHF_FH_JSI11i_1	74.237	52.039			0.67096	0.65206	55.92	3	2	Median	1.9087	1.6264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67096	0.65206	NaN	1	0	Median	0.57515	0.58931	NaN	1	1	Median	105260000	55846000	49416000	28640000	9041900	19598000	0	0	0	42896000	25695000	17201000	33725000	21109000	12616000	32679	610	30919	202409;202410;202411	273623;273624;273625;273626	273623			4	
LMPGQDPEK	1	Unmodified	1013.4852	0.48518136	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	22.326	21.727	2	0.00018053	18846	160511_QHF_FH_JSI10i_1	86.67	74.314			0.96522	0.90735	29.369	5	1	Median	1.0965	0.90735	NaN	1	0	Median	0.88842	1.0775	55.82	2	1	Median	0.96522	0.93065	NaN	1	0	Median	0.86767	0.90169	NaN	1	0	Median	2109200000	1165800000	943450000	543820000	287740000	256070000	519160000	303460000	215700000	494500000	219110000	275390000	551750000	355460000	196290000	32680	3973	30920	202412;202413;202414;202415;202416	273627;273628;273629;273630;273631;273632;273633;273634;273635	273632			9	
LMPGQDPEK	1	Oxidation (M)	1029.4801	0.48009598	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				22.973	21.766	2	0.045689	18517	160511_QHF_FH_JSI9i_1	58.981	35.008			0.6135	0.50705	NaN	1	1	Median	0.6135	0.50705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89118000	48552000	40566000	89118000	48552000	40566000	0	0	0	0	0	0	0	0	0	32681	3973	30920	202417	273636	273636			1	
LMPMQQIAN	0	Unmodified	1044.5096	0.50962197	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.182	56.53	2	0.00084518	51192	160511_QHF_FH_JSI11i_1	73.039	66.808			1.1243	0.94952	5.64	4	0	Linear	1.1448	0.93309	NaN	1	0	Median	0.7255	0.85921	NaN	1	0	Median	0.99855	0.96624	NaN	1	0	Median	0.91554	0.97042	NaN	1	0	Median	2511100000	1367000000	1144100000	676950000	352910000	324040000	560220000	330410000	229810000	643600000	346090000	297510000	630320000	337550000	292770000	32682	1865	30921	202418;202419;202420;202421	273637;273638;273639;273640;273641;273642;273643;273644	273638			8	
LMPMQQIAN	0	2 Oxidation (M)	1076.4995	0.49945121	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	2	0			By MS/MS	By MS/MS	12	0					2							1	1	33.158	24.67	2	0.0067825	11896	160513_QHF_FH_JSI12Kac_2	47.067	43.321			1.1866	1.2234	6.9841	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3049	1.2853	NaN	1	0	Median	1.0791	1.1645	NaN	1	0	Median	2643500	1226200	1417400	0	0	0	0	0	0	1078200	455070	623090	1565400	771090	794290	32683	1865	30921	202422;202423	273645;273646	273646		1548;1549	2	
LMPMQQIAN	0	Oxidation (M)	1060.5045	0.50453659	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	1	0				By MS/MS	12	0					1								1	52.966	43.622	2	0.021373	19876	160513_QHF_FH_JSI12Kac_2	57.559	51.456			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32684	1865	30921	202424	273647	273647		1548;1549	1	
LMPPDSTTIEK	1	Unmodified	1230.6166	0.61658946	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.539	42.77	2	0.00036466	38882	160511_QHF_FH_JSI12i_1	86.898	61.975			0.77941	0.8344	46.262	5	0	Median	1.3827	1.1525	85.654	2	0	Median	0.72027	0.87225	NaN	1	0	Median	0.83915	0.81448	NaN	1	0	Median	0.77941	0.8344	NaN	1	0	Median	1094600000	576800000	517830000	246710000	135810000	110900000	288080000	161140000	126950000	290330000	131860000	158470000	269510000	147990000	121510000	32685	3921	30922	202425;202426;202427;202428;202429	273648;273649;273650;273651;273652;273653;273654	273651			7	
LMPPLIQK	1	Unmodified	938.56231	0.56230947	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	2	1	58.845	58.105	2	0.0049815	51085	160511_QHF_FH_JSI9i_2	67.035	49.187			1.0537	1.1442	27.125	7	3	Median	1.1656	1.0042	18.47	2	0	Median	0.80112	0.97034	36.179	2	1	Median	1.0603	0.9897	28.476	2	2	Median	1.4847	1.5902	NaN	1	0	Median	262310000	133290000	129030000	48352000	23359000	24994000	65373000	37709000	27664000	101000000	49027000	51968000	47594000	23190000	24404000	32686	205	30923	202430;202431;202432;202433;202434;202435;202436	273655;273656;273657;273658;273659;273660	273658			6	
LMPQDWDR	0	Unmodified	1059.4808	0.48076468	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.981	45.003	2	0.063055	38796	160511_QHF_FH_JSI11i_2	34.402	13.743			0.92235	0.99336	10.079	4	0	Median	1.1821	1.0304	NaN	1	0	Median	0.77499	0.95766	NaN	1	0	Median	1.0896	1.0981	NaN	1	0	Median	0.78075	0.86851	NaN	1	0	Median	236900000	129400000	107490000	31573000	14030000	17543000	47556000	25453000	22103000	69431000	35025000	34406000	88337000	54895000	33442000	32687	3090	30924	202437;202438;202439;202440	273661	273661			1	
LMPTADDDMAR	0	Unmodified	1234.5322	0.5322079	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.167	36.758	2	0.00045373	33120	160511_QHF_FH_JSI11i_1	70.908	65.427			0.78211	0.83286	1.3192	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68596	0.8226	NaN	1	0	Median	0.86963	0.84458	NaN	1	0	Median	0.78211	0.83286	NaN	1	0	Median	169750000	97656000	72092000	0	0	0	67392000	40640000	26752000	59343000	30876000	28467000	43014000	26140000	16874000	32688	5468	30925	202441;202442;202443	273662;273663;273664	273662			3	
LMPTQWR	0	Unmodified	930.47456	0.47455709	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		43.216	43.216	2	0.025293	38031	160511_QHF_FH_JSI11i_3	57.463	25.35			0.60005	0.55902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60005	0.55902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100840000	60665000	40172000	0	0	0	0	0	0	100840000	60665000	40172000	0	0	0	32689	4271	30926	202444	273665	273665			1	
LMPVIMIIMR	0	3 Oxidation (M)	1263.6753	0.67530709	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	3	0	By MS/MS	By matching	By MS/MS	By MS/MS	15.3	0.7							1	3	3	2	2	1	2	75.782	65.866	2	0.0016137	33988	160513_QHF_FH_JSI9Kac_5	57.281	35.195			1.0599	1.0012	16.076	7	1	Median	1.1829	1.014	1.801	2	0	Median	0.66977	0.80777	1.0358	2	0	Median	1.244	1.2161	NaN	1	1	Median	0.98106	1.0558	14.212	2	0	Median	257490000	128600000	128890000	102930000	45869000	57057000	26630000	15581000	11049000	40163000	18143000	22019000	87771000	49003000	38768000	32690	2242	30927	202445;202446;202447;202448;202449;202450;202451	273666;273667;273668;273669;273670	273666		1857;1858;1859	5	
LMPVIMIIMR	0	Oxidation (M)	1231.6855	0.68547784	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	1	2	88.176	79.817	2	0.0017673	44129	160513_QHF_FH_JSI11Kac_6	75.38	54.478			1.1135	1.112	30.382	5	1	Median	1.6142	1.3956	52.719	2	1	Median	1.0564	1.2499	NaN	1	0	Median	1.1612	1.112	NaN	1	0	Median	0.93082	0.98448	NaN	1	0	Median	1103200000	537930000	565230000	285330000	124830000	160500000	342490000	182000000	160490000	294610000	136010000	158600000	180730000	95091000	85641000	32691	2242	30927	202452;202453;202454;202455;202456;202457	273671;273672;273673;273674;273675;273676;273677;273678;273679	273671		1857;1858;1859	9	
LMPVIMIIMR	0	Unmodified	1215.6906	0.69056322	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	95.67	87.547	2	4.0772E-26	47196	160513_QHF_FH_JSI12Kac_6	186.67	142.28			1.3986	1.2396	76.556	6	4	Median	1.6986	1.4262	NaN	1	0	Median	1.1569	1.3703	76.337	2	2	Median	1.1516	1.0775	NaN	1	0	Median	1.1172	1.1685	151.08	2	2	Median	6474100000	3177000000	3297100000	898040000	374270000	523770000	2764000000	1503600000	1260400000	1667900000	806290000	861640000	1144100000	492850000	651290000	32692	2242	30927	202458;202459;202460;202461;202462;202463	273680;273681;273682;273683;273684;273685;273686	273684			7	
LMPVIMIIMR	0	2 Oxidation (M)	1247.6804	0.68039247	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By matching	16	0									5	2	2		1	81.395	73.808	2	0.003498	38954	160513_QHF_FH_JSI9Kac_6	53.166	36.39			1.0922	1.0161	10.338	5	0	Median	1.1557	0.98085	9.9716	2	0	Median	0.84463	0.98066	5.024	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1305	1.1914	NaN	1	0	Median	435440000	220180000	215260000	181980000	81885000	100090000	214750000	122110000	92641000	0	0	0	38715000	16188000	22527000	32693	2242	30927	202464;202465;202466;202467;202468	273687;273688;273689;273690	273687		1857;1858;1859	4	
LMPWVLAMIR	0	Unmodified	1228.6824	0.68244138	1362	P30711	GSTT1	Glutathione S-transferase theta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.012	88.142	2	1.4105E-07	51907	160513_QHF_FH_JSI10Kac_6	117.02	56.868			1.1288	1.0549	103.72	5	3	Median	4.2551	3.6039	NaN	1	1	Median	1.1027	1.3026	178.64	2	2	Median	1.1288	1.0549	NaN	1	0	Median	0.93251	0.97347	NaN	1	0	Median	5468100000	2413800000	3054300000	739610000	179920000	559690000	2541900000	1162800000	1379100000	1614300000	731670000	882670000	572260000	339410000	232850000	32694	1362	30928	202469;202470;202471;202472;202473	273691;273692;273693;273694;273695;273696;273697	273697			7	
LMPWVLAMIR	0	Oxidation (M)	1244.6774	0.677356	1362	P30711	GSTT1	Glutathione S-transferase theta-1	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		89.346	80.343	2	0.0040649	44710	160513_QHF_FH_JSI9Kac_6	62.2	40.114			1.11	0.99538	21.566	2	1	Median	1.021	0.85459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2068	1.1593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	254810000	125030000	129780000	132110000	74724000	57385000	0	0	0	122710000	50309000	72397000	0	0	0	32695	1362	30928	202474;202475	273698;273699;273700	273700		994	3	
LMQDLDNNSITVK	1	Unmodified	1489.7446	0.74464352	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			50.955	50.143	2	0.00079414	45097	160511_QHF_FH_JSI10i_1	79.659	38.211			2.6554	2.6143	3.3059	2	2	Median	3.0958	2.5539	NaN	1	1	Median	2.2776	2.6761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50435000	15099000	35336000	22249000	5358900	16890000	28185000	9739600	18446000	0	0	0	0	0	0	32696	2637	30929	202476;202477	273701;273702	273701			2	
LMQGDEICLR	0	Unmodified	1233.5846	0.58457783	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.842	46.446	2	0.023218	39695	160511_QHF_FH_JSI12i_2	48.794	29.7			1.3238	1.4651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3238	1.4651	NaN	1	1	Median	36801000	14853000	21948000	0	0	0	0	0	0	0	0	0	36801000	14853000	21948000	32697	3904	30930	202478	273703	273703			1	
LMQGFNEDMAIEAQQK	1	Unmodified	1851.8495	0.8495193	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	8	6								4	3	3	4	62.269	61.469	2;3	9.4697E-22	54565	160511_QHF_FH_JSI9i_1	212.59	188.24			0.96198	0.97028	21.256	12	4	Median	1.1517	0.94867	31.549	4	2	Median	0.86325	1.0237	7.8119	2	0	Median	0.97197	0.95524	7.3289	2	0	Median	0.96198	0.97931	23.172	4	2	Median	1365000000	687420000	677540000	352080000	162530000	189550000	327620000	176280000	151340000	336670000	178120000	158540000	348600000	170490000	178110000	32698	220	30931	202479;202480;202481;202482;202483;202484;202485;202486;202487;202488;202489;202490;202491;202492	273704;273705;273706;273707;273708;273709;273710;273711;273712;273713;273714;273715;273716;273717;273718;273719;273720;273721;273722	273717			19	
LMQIQPNREDTETLIK	1	Unmodified	1928.0037	0.0037117545	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		56.032	55.258	3	0.0038943	49019	160511_QHF_FH_JSI11i_3	34.851	24.035			0.9664	1.0185	19.328	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0115	1.1677	NaN	1	0	Median	0.92335	0.88839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	235360000	133360000	102000000	0	0	0	58714000	34143000	24571000	176640000	99216000	77429000	0	0	0	32699	5106	30932	202493;202494	273723	273723			1	
LMQITSLHSLNAFLLPIK	1	Unmodified	2038.1649	0.16490384	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.95	6.63		3	7						12	6	6	5	5	96.86	92.264	2;3;4	1.1732E-167	47265	160513_QHF_FH_JSI9Kac_6	290.65	265.31			0.98794	0.92094	15.194	22	5	Median	1.1764	1.0144	9.2506	6	1	Median	0.75939	0.90697	12.929	6	1	Median	0.91188	0.88988	22.45	5	1	Median	1.0611	1.1055	14.946	5	2	Median	25595000000	12848000000	12747000000	6203100000	2957400000	3245700000	6149400000	3594800000	2554600000	6241600000	3426600000	2815000000	7000800000	2869300000	4131500000	32700	1693	30933	202495;202496;202497;202498;202499;202500;202501;202502;202503;202504;202505;202506;202507;202508;202509;202510;202511;202512;202513;202514;202515;202516	273724;273725;273726;273727;273728;273729;273730;273731;273732;273733;273734;273735;273736;273737;273738;273739;273740;273741;273742;273743;273744;273745;273746;273747;273748;273749;273750;273751;273752;273753;273754;273755;273756	273742			33	
LMQITSLHSLNAFLLPIK	1	Oxidation (M)	2054.1598	0.15981847	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	94.626	89.832	3	1.7631E-70	43576	160513_QHF_FH_JSI12Kac_6	205.88	195.27			1.1087	1.0021	8.3258	7	2	Median	1.1502	0.9466	1.6171	2	0	Median	0.86081	1.0181	8.5844	2	1	Median	1.0944	1.0403	5.29	2	1	Median	1.114	1.1721	NaN	1	0	Median	3463200000	1655000000	1808100000	1332300000	635040000	697250000	867220000	441210000	426000000	789870000	350440000	439440000	473770000	228340000	245430000	32701	1693	30933	202517;202518;202519;202520;202521;202522;202523	273757;273758;273759;273760;273761;273762;273763;273764;273765;273766;273767;273768	273765		1371	12	
LMQLMESEQK	1	Unmodified	1235.589	0.5889945	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								2	2	2	2	41.858	40.964	2	1.1861E-06	35166	160511_QHF_FH_JSI11i_2	127.4	85.289			1.5876	1.8279	80.041	8	8	Median	1.4118	1.2052	124.49	2	2	Median	1.6025	1.9382	27.149	2	2	Median	1.051	1.043	111.64	2	2	Median	0.9083	1.006	103.31	2	2	Median	967480000	482280000	485200000	171130000	77327000	93799000	212910000	97685000	115220000	328870000	174030000	154840000	254580000	133230000	121350000	32702	3328	30934	202524;202525;202526;202527;202528;202529;202530;202531	273769;273770;273771;273772;273773;273774;273775;273776;273777	273776			9	
LMQLTEEPQNSMPDIIIWMIR	0	Unmodified	2557.2743	0.27427265	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	98.46	90.574	2;3	5.3174E-259	54113	160513_QHF_FH_JSI10Kac_6	338.69	300.18			0.87076	1.2779	23.796	5	1	Linear	1.481	1.2779	NaN	1	0	Median	0.91788	1.093	17.827	2	0	Median	1.9033	1.8403	NaN	1	1	Median	1.3931	1.4742	NaN	1	0	Median	734860000	345310000	389550000	116620000	52615000	64006000	418250000	215710000	202540000	70322000	26986000	43335000	129670000	50005000	79667000	32703	5161	30935	202532;202533;202534;202535;202536;202537	273778;273779;273780;273781;273782	273782			5	
LMQLVDHR	0	Oxidation (M)	1026.528	0.52804923	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	3	0			4							1		2	1	26.243	25.893	3	0.00059594	22237	160511_QHF_FH_JSI11i_3	82.279	33.775			2.2416	1.9986	163.98	4	1	Median	1.6755	1.4148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54938	0.50927	242.2	2	0	Median	2.9989	2.9511	NaN	1	1	Median	306900000	134700000	172200000	10634000	4574200	6059600	0	0	0	167000000	87190000	79815000	129260000	42935000	86326000	32704	3893	30936	202538;202539;202540;202541	273783;273784;273785	273784		2328	3	
LMQLVDHR	0	Unmodified	1010.5331	0.5331346	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	2.96		8	11						1	4	7	5	4	27.138	26.033	2;3	0.0001662	21517	160511_QHF_FH_JSI12i_3	119.41	99.892			1.748	2.0562	153	18	17	Median	4.3231	3.6084	285.06	2	1	Median	1.7929	2.1807	119.1	7	7	Median	1.2424	1.2757	102.9	5	5	Median	4.3174	4.673	229.46	4	4	Median	5556900000	2223600000	3333300000	358150000	94486000	263660000	1632200000	893410000	738840000	1861900000	674640000	1187300000	1704600000	561110000	1143500000	32705	3893	30936	202542;202543;202544;202545;202546;202547;202548;202549;202550;202551;202552;202553;202554;202555;202556;202557;202558;202559;202560;202561	273786;273787;273788;273789;273790;273791;273792;273793;273794;273795;273796;273797;273798;273799;273800;273801;273802;273803;273804;273805;273806	273805			21	
LMQQLLESDK	1	Unmodified	1203.6169	0.61692381	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	45.355	44.435	2	2.2596E-08	38121	160511_QHF_FH_JSI11i_2	126.31	84.884			0.97337	1.1276	43.958	6	3	Median	2.2245	1.8637	50.825	2	2	Median	0.939	1.1435	NaN	1	0	Median	0.83682	0.83376	21.67	2	1	Median	1.0009	1.1119	NaN	1	0	Median	932960000	432780000	500180000	227610000	86103000	141510000	122950000	62600000	60349000	373800000	175730000	198080000	208590000	108350000	100240000	32706	3860	30937	202562;202563;202564;202565;202566;202567	273807;273808;273809;273810	273810			4	
LMQQQQEVAGLSK	1	Unmodified	1458.7501	0.75006325	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	35.035	34.679	2	0.00014302	31212	160511_QHF_FH_JSI11i_1	108.35	84.259			0.70103	0.74586	64.235	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0085	1.1655	105.17	2	2	Median	0.94088	0.89283	62.836	2	2	Median	0.70103	0.74586	NaN	1	1	Median	228970000	110200000	118780000	0	0	0	87848000	41157000	46691000	98148000	44386000	53761000	42978000	24653000	18325000	32707	261	30938	202568;202569;202570;202571;202572	273811;273812;273813;273814;273815	273812			5	
LMQVVPQET	0	Unmodified	1043.5321	0.53213155	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	52.078	49.639	2	3.4939E-05	44202	160511_QHF_FH_JSI9i_1	100.19	92.035			0.81716	0.90885	25.344	5	0	Median	1.3354	1.118	NaN	1	0	Median	0.75606	0.90885	NaN	1	0	Median	1.0679	1.0393	37.875	2	0	Median	0.68763	0.73038	NaN	1	0	Median	10137000000	4673000000	5463600000	2474700000	987920000	1486800000	2585100000	1172300000	1412800000	2695500000	1320300000	1375200000	2381300000	1192500000	1188800000	32708	2172	30939	202573;202574;202575;202576;202577	273816;273817;273818;273819;273820;273821;273822;273823;273824	273823			9	
LMQVVPQET	0	Oxidation (M)	1059.527	0.52704617	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	11.3	0.452				5	2						1	2	4	45.247	36.179	2	0.0011473	14901	160513_QHF_FH_JSI11Kac_1	85.265	81.678			0.83306	0.87616	10.858	7	0	Median	NaN	NaN	NaN	0	0	Median	0.90892	1.0292	NaN	1	0	Median	1.0507	1.0252	5.5494	2	0	Median	0.80932	0.86308	4.3801	4	0	Median	35656000	18993000	16663000	0	0	0	3246800	2023900	1222900	12214000	5860800	6353200	20195000	11109000	9086500	32709	2172	30939	202578;202579;202580;202581;202582;202583;202584	273825;273826;273827;273828;273829;273830;273831;273832	273830		1822	8	
LMSAISK	1	Unmodified	748.41531	0.41531088	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	1	2	1	21.446	20.662	2	0.012047	17008	160511_QHF_FH_JSI12i_2	69.998	40.66			1.8487	1.9812	93.123	6	4	Median	0.58506	0.48315	11.329	2	1	Median	2.8475	3.4941	NaN	1	1	Median	3.0514	3.0696	5.732	2	2	Median	1.2002	1.3316	NaN	1	0	Median	4826400000	2171000000	2655300000	1332700000	607110000	725610000	999300000	493370000	505930000	1519000000	622880000	896070000	975420000	447690000	527730000	32710	1650	30940	202585;202586;202587;202588;202589;202590	273833;273834;273835;273836;273837	273834			5	
LMSALLSGLTDR	0	Unmodified	1275.6857	0.68567208	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	2	2		80.682	80.012	2	0.00031214	71619	160511_QHF_FH_JSI11i_3	74.533	36.977			1.0156	0.91349	55.704	4	3	Median	1.2257	1.0749	NaN	1	0	Median	1.1187	1.3353	85.662	2	2	Median	0.84159	0.77633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	150900000	73111000	77791000	17868000	6145300	11722000	60892000	24993000	35899000	72142000	41973000	30170000	0	0	0	32711	2997	30941	202591;202592;202593;202594;202595	273838;273839;273840;273841;273842;273843	273839			6	
LMSELVSNGVQIYQFPTDDDTIAK	1	Unmodified	2683.3051	0.30509831	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	96.547	96.433	3	4.1126E-06	87331	160511_QHF_FH_JSI10i_1	57.922	50.969			0.85159	0.95933	35.259	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62822	0.74763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1544	1.231	NaN	1	1	Median	65898000	33733000	32166000	0	0	0	43602000	24196000	19406000	0	0	0	22296000	9536600	12760000	32712	5192	30942	202596;202597	273844;273845	273845			2	
LMSELYHPDDHVL	0	Unmodified	1567.7341	0.73407884	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		4								1	1	2		62.737	62.027	2;3	4.528E-05	54030	160511_QHF_FH_JSI11i_2	78.043	67.098			0.92793	0.96284	14.364	3	0	Plateau	1.4852	1.2441	NaN	1	0	Median	0.8634	1.0363	NaN	1	0	Median	0.92793	0.93709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	408680000	222160000	186520000	74066000	36062000	38004000	148710000	74718000	73991000	185910000	111380000	74529000	0	0	0	32713	1682	30943	202598;202599;202600;202601	273846;273847;273848	273846			3	
LMSINYLGSVYPSR	0	Unmodified	1598.8127	0.81266351	2240	Q06136	KDSR	3-ketodihydrosphingosine reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	3	3	4	80.523	77.355	2	8.9801E-31	40846	160513_QHF_FH_JSI10Kac_6	198.49	162.98			1.1211	1.0911	41.215	12	3	Median	1.3541	1.1687	9.383	2	0	Median	0.87647	0.99914	29.446	3	1	Median	1.1764	1.0885	19.25	3	0	Plateau	0.90038	0.90469	64.223	4	2	Median	827830000	405530000	422300000	160630000	64960000	95668000	223080000	126480000	96606000	185350000	82476000	102870000	258780000	131620000	127160000	32714	2240	30944	202602;202603;202604;202605;202606;202607;202608;202609;202610;202611;202612;202613	273849;273850;273851;273852;273853;273854;273855;273856;273857;273858;273859;273860;273861;273862;273863	273863			15	
LMSLIQK	1	Unmodified	831.48881	0.48881017	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.767	42.767	2	0.032473	37714	160511_QHF_FH_JSI11i_3	52.683	26.574			0.32713	0.3103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32713	0.3103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	287360000	227460000	59900000	0	0	0	0	0	0	287360000	227460000	59900000	0	0	0	32715	4922	30945	202614	273864	273864			1	
LMSNALSTVTR	0	Unmodified	1191.6282	0.6281572	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	44.581	43.864	2	0.00039333	36706	160511_QHF_FH_JSI10i_3	72.096	29.181			0.92712	1.0003	11.748	6	0	Median	1.2467	1.0735	NaN	1	0	Median	0.85727	1.0446	7.0506	2	0	Median	0.97923	0.95404	7.6153	2	0	Median	0.79074	0.80124	NaN	1	0	Median	609470000	325240000	284230000	77315000	35447000	41869000	169220000	94130000	75085000	193210000	101490000	91723000	169730000	94171000	75558000	32716	5158	30946	202615;202616;202617;202618;202619;202620	273865;273866;273867;273868;273869	273868			5	
LMSNLDSNR	0	Unmodified	1048.4971	0.49714303	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	20.432	19.981	2	0.0004336	16417	160511_QHF_FH_JSI12i_2	80.787	57.019			0.96641	0.93792	18.612	9	0	Median	1.0445	0.88665	NaN	1	0	Median	0.74761	0.89743	10.777	2	0	Median	0.84154	0.86361	30.358	3	0	Plateau	1.004	1.1095	10.598	3	0	Median	2256300000	1221700000	1034700000	319960000	153750000	166210000	549520000	334110000	215410000	825850000	419360000	406480000	560980000	314430000	246560000	32717	1278	30947	202621;202622;202623;202624;202625;202626;202627;202628;202629	273870;273871;273872;273873;273874;273875;273876;273877;273878	273873			9	
LMSSGNEESLRK	1	Unmodified	1349.6609	0.66091389	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							1	3	3		16.587	16.08	2;3	0.0017744	13183	160511_QHF_FH_JSI11i_3	77.379	24.897			1.2152	1.0468	79.545	7	6	Median	1.2152	1.0468	NaN	1	0	Median	0.55516	0.66817	89.991	3	3	Median	2.6698	2.4665	88.561	3	3	Median	NaN	NaN	NaN	0	0	Median	459760000	174540000	285220000	55962000	24379000	31583000	104900000	58844000	46057000	298900000	91320000	207580000	0	0	0	32718	1240	30948	202630;202631;202632;202633;202634;202635;202636	273879;273880;273881;273882;273883;273884;273885;273886	273880			8	
LMSSGNEESLRK	1	Oxidation (M)	1365.6558	0.65582851	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		16.005	16.005	3	0.0091424	13197	160511_QHF_FH_JSI11i_3	46.069	31.39			1.7733	1.6946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7733	1.6946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29824000	8886200	20938000	0	0	0	0	0	0	29824000	8886200	20938000	0	0	0	32719	1240	30948	202637	273887	273887		872	1	
LMSTVDPK	1	Unmodified	889.4579	0.45790397	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.67	5.91	1	1					1					1	2	25.025	21.461	2	0.013047	19132	160511_QHF_FH_JSI12i_1	52.683	30.579			0.72097	0.78365	57.412	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2307	2.1733	NaN	1	1	Median	0.80615	0.87601	32.987	2	0	Median	302690000	187680000	115010000	0	0	0	0	0	0	5726800	2644200	3082600	296960000	185040000	111920000	32720	2230	30949	202638;202639;202640	273888;273889;273890;273891	273890			4	
LMTAYNSYK	1	Unmodified	1089.5165	0.51648149	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	31.354	30.475	2	0.010365	26819	160511_QHF_FH_JSI10i_2	59.35	43.911			2.3269	2.349	70.349	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73837	0.90471	NaN	1	1	Median	2.3269	2.349	NaN	1	1	Median	0.52096	0.59538	NaN	1	1	Median	145220000	67508000	77714000	0	0	0	34949000	20729000	14221000	74943000	27970000	46973000	35329000	18809000	16520000	32721	5258	30950	202641;202642;202643	273892;273893;273894	273894			3	
LMTDTINEPILLCR	0	Unmodified	1687.8637	0.8637128	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	79.286	78.46	2;3	1.0154E-40	69000	160511_QHF_FH_JSI11i_2	209.85	173.91			0.84801	0.89683	23.661	7	3	Median	1.0309	0.89683	NaN	1	1	Median	0.8968	1.0833	7.8553	2	2	Median	0.77759	0.7817	7.897	2	0	Median	1.0322	1.1461	37.996	2	0	Median	345450000	177700000	167750000	19249000	8242600	11006000	105020000	54041000	50977000	130150000	75268000	54880000	91034000	40152000	50883000	32722	375	30951	202644;202645;202646;202647;202648;202649;202650	273895;273896;273897;273898;273899;273900;273901;273902	273899			7	
LMTHVDK	1	Unmodified	842.43202	0.43202358	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		10.041	10.041	2	0.036665	7619	160511_QHF_FH_JSI11i_3	50.127	25.128			2.4084	2.1653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4084	2.1653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52488000	19162000	33325000	0	0	0	0	0	0	52488000	19162000	33325000	0	0	0	32723	179	30952	202651	273903	273903			1	
LMTIMDSMNDQELDSTDGAK	1	Unmodified	2213.949	0.94903493	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	3	1	74.367	73.978	2;3	1.9339E-55	67278	160511_QHF_FH_JSI11i_1	175.15	154.77			1.108	1.0944	25.033	5	2	Median	1.108	0.89297	NaN	1	1	Median	1.2387	1.4045	29.554	2	1	Median	1.132	1.0944	NaN	1	0	Median	0.9615	1.0087	NaN	1	0	Median	144690000	88282000	56409000	12291000	6289900	6001600	73570000	52970000	20600000	29190000	13326000	15864000	29639000	15696000	13943000	32724	1929	30953	202652;202653;202654;202655;202656;202657;202658;202659;202660	273904;273905;273906;273907;273908;273909;273910;273911;273912;273913	273906			10	
LMTIYLSTK	1	Unmodified	1068.5889	0.58891815	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	68.663	59.962	2	0.0015973	32925	160513_QHF_FH_JSI10Kac_6	87.308	23.828			0.80297	0.86785	49.42	4	2	Median	NaN	NaN	NaN	0	0	Median	0.80297	0.95081	42.295	2	2	Median	1.0907	1.0683	NaN	1	0	Median	0.38327	0.42153	NaN	1	0	Median	60206000	32717000	27490000	0	0	0	36010000	20056000	15954000	16300000	7485500	8814300	7896600	5174900	2721700	32725	2497	30954	202661;202662;202663;202664;202665	273914;273915;273916;273917	273917			4	
LMTPKPVSIATNR	1	Acetyl (K)	1468.8072	0.8071842	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		70.133	59.299	2	0.0028951	31830	160513_QHF_FH_JSI11Kac_5	70.977	53.113			0.7595	0.75396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7595	0.75396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4489200	2463300	2025800	0	0	0	0	0	0	4489200	2463300	2025800	0	0	0	32726	1684	30955	202666	273918;273919	273918	1704		2	
LMTPTLSFLAR	0	Unmodified	1248.69	0.69002918	2812	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			88.208	87.067	2	0.045323	71310	160511_QHF_FH_JSI9i_3	36.693	15.792			1.2505	1.2251	0.88027	2	0	Median	1.4619	1.2175	NaN	1	0	Median	1.0696	1.2328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24408000	12123000	12285000	13332000	4636300	8695500	11077000	7486700	3589800	0	0	0	0	0	0	32727	2812	30956	202667;202668	273920;273921	273921			2	
LMTQAQLEEATR	0	Unmodified	1389.6922	0.69221402	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	41.822	40.892	2	7.6975E-06	34967	160511_QHF_FH_JSI12i_2	124.1	84.799			1.3435	1.3469	74.684	5	5	Median	NaN	NaN	NaN	0	0	Median	2.5178	3.0318	NaN	1	1	Median	0.95472	0.96492	47.167	2	2	Median	0.89128	0.97238	98.338	2	2	Median	478160000	259250000	218910000	0	0	0	49337000	15958000	33379000	270720000	162440000	108280000	158100000	80851000	77252000	32728	2104	30957	202669;202670;202671;202672;202673	273922;273923;273924;273925;273926	273922			5	
LMTSSTNNWVLIK	1	Unmodified	1505.7912	0.79119978	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11.7	6.13			1						2	1		2		75.449	69.475	2	5.0288E-12	37382	160513_QHF_FH_JSI11Kac_6	121.9	83.595			1.0109	0.98562	47.253	3	1	Median	1.4655	1.2466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7392	0.70318	47.752	2	1	Median	NaN	NaN	NaN	0	0	Median	139360000	86158000	53205000	26132000	10463000	15669000	0	0	0	113230000	75695000	37535000	0	0	0	32729	179	30958	202674;202675;202676	273927;273928;273929	273928			3	
LMTTGNNTVR	0	Unmodified	1105.555	0.55499226	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	15.926	15.497	2	4.4314E-06	12786	160511_QHF_FH_JSI11i_3	109.71	84.155			1.1705	1.1542	10.545	4	0	Median	1.3992	1.1898	NaN	1	0	Median	1.1299	1.3065	NaN	1	0	Median	1.2125	1.1198	NaN	1	0	Median	1.0113	1.0164	NaN	1	0	Median	431260000	185500000	245760000	117580000	55639000	61938000	24258000	9627600	14630000	93978000	47274000	46704000	195450000	72957000	122490000	32730	4775	30959	202677;202678;202679;202680	273930;273931	273930			2	
LMTTNEIQSNIYT	0	Unmodified	1526.7287	0.72865911	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			64.684	64.33	2	0.0085943	58312	160511_QHF_FH_JSI10i_1	58.743	51.097			1.4866	1.721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4866	1.721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	205900000	91023000	114870000	0	0	0	205900000	91023000	114870000	0	0	0	0	0	0	32731	696	30960	202681	273932	273932			1	
LMVALAK	1	Unmodified	744.45678	0.45678176	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	5	6	5	48.308	43.34	2	0.0054387	22483	160513_QHF_FH_JSI12Kac_6	94.669	94.669			0.96166	0.97963	20.554	20	0	Median	1.0318	0.86133	35.888	4	0	Median	0.75632	0.88918	9.1848	5	0	Median	1.0096	1.0083	13.368	6	0	Median	0.96719	1.0478	24.178	5	0	Median	28579000000	12763000000	15817000000	4692200000	1970400000	2721900000	6177300000	2949600000	3227700000	9543200000	4052200000	5490900000	8166800000	3790600000	4376100000	32732	870	30961	202682;202683;202684;202685;202686;202687;202688;202689;202690;202691;202692;202693;202694;202695;202696;202697;202698;202699;202700;202701	273933;273934;273935;273936;273937;273938;273939;273940;273941;273942;273943;273944;273945;273946;273947;273948;273949;273950;273951;273952;273953;273954;273955;273956;273957;273958;273959;273960;273961;273962;273963;273964;273965;273966;273967;273968;273969;273970;273971;273972;273973;273974;273975;273976;273977;273978;273979;273980;273981;273982	273979			50	
LMVALAK	1	Oxidation (M)	760.4517	0.45169638	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.07	2	4	2				5	7	6	4	8	6	8	42.428	35.383	2	0.0043116	20055	160513_QHF_FH_JSI11Kac_5	94.669	64.599			0.89088	0.92402	20.999	26	0	Median	0.85881	0.7421	17.516	4	0	Median	0.81631	0.95477	22.497	8	0	Median	0.93022	0.92402	15.369	6	0	Median	0.91431	0.97472	22.335	8	0	Median	1426800000	755320000	671480000	214300000	108280000	106020000	425240000	246570000	178670000	335210000	183390000	151820000	452040000	217080000	234960000	32733	870	30961	202702;202703;202704;202705;202706;202707;202708;202709;202710;202711;202712;202713;202714;202715;202716;202717;202718;202719;202720;202721;202722;202723;202724;202725;202726;202727	273983;273984;273985;273986;273987;273988;273989;273990;273991;273992;273993;273994;273995;273996;273997;273998;273999;274000;274001;274002;274003	273998		410	21	
LMVEFPLDPALSK	1	Unmodified	1458.7792	0.77923811	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	2		1	98.971	98.865	2	0.0020839	85211	160511_QHF_FH_JSI12i_2	70.808	61.375			0.95599	1.0056	70.379	4	0	Median	0.96296	0.84769	NaN	1	0	Median	1.6942	2.0543	76.869	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67787	0.75574	NaN	1	0	Median	62702000	34425000	28277000	16827000	11511000	5316200	30746000	14596000	16150000	0	0	0	15129000	8318000	6811100	32734	3861	30962	202728;202729;202730;202731	274004;274005;274006	274004			2	
LMVELSK	1	Unmodified	818.45718	0.45717569	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	3	2	2	44.213	43.354	2	0.012569	37191	160511_QHF_FH_JSI12i_2	69.176	16.539			0.82001	0.96194	27.131	8	2	Median	1.6475	1.3814	NaN	1	1	Median	0.75496	0.92436	34.721	3	1	Median	1.0127	1.0143	1.8657	2	0	Median	0.7664	0.83219	4.1163	2	0	Median	3757800000	1881200000	1876600000	559550000	274560000	285000000	951160000	469700000	481450000	1195300000	563080000	632200000	1051800000	573820000	478000000	32735	1630	30963	202732;202733;202734;202735;202736;202737;202738;202739	274007;274008;274009;274010;274011;274012;274013;274014;274015;274016;274017;274018;274019	274009			13	
LMVEPLQAILIR	0	Unmodified	1394.8319	0.83194239	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	99.576	97.614	2	0.0061917	87115	160511_QHF_FH_JSI12i_2	62.303	48.533			1.0579	1.0824	14.097	5	1	Median	1.4108	1.2007	NaN	1	0	Median	0.87519	1.0637	NaN	1	0	Median	1.2153	1.2187	16.773	2	1	Median	0.83683	0.94292	NaN	1	0	Median	1052300000	541730000	510540000	157980000	71086000	86892000	254030000	146060000	107970000	305280000	144300000	160980000	334970000	180280000	154690000	32736	2454	30964	202740;202741;202742;202743;202744	274020;274021;274022	274020			3	
LMVESHR	0	Unmodified	870.43817	0.43817159	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.83	0.373		1	5								3	2	1	10.129	9.8459	2;3	0.006915	7476	160511_QHF_FH_JSI11i_3	89.369	17.654			1.0749	1.2275	17.155	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.3159	4.2802	3	0	Median	1.0963	1.0367	19.53	2	0	Median	0.96121	0.97452	NaN	1	0	Median	710940000	421810000	289130000	0	0	0	162230000	81258000	80976000	380350000	233870000	146480000	168360000	106680000	61672000	32737	1739	30965	202745;202746;202747;202748;202749;202750	274023;274024;274025;274026	274023			4	
LMVHNWEYLGK	1	Unmodified	1388.6911	0.69109181	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.321	56.198	2;3	4.5305E-05	48360	160511_QHF_FH_JSI12i_3	103.55	91.589			1.4621	1.4786	50.859	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0981	1.0319	NaN	1	1	Median	1.9468	2.1185	NaN	1	1	Median	204290000	100840000	103450000	0	0	0	0	0	0	133400000	72773000	60625000	70888000	28068000	42820000	32738	5321	30966	202751;202752	274027;274028	274028			2	
LMVHTVATFNSIK	1	Unmodified	1459.7857	0.78572048	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	3	2	4	3	60.526	54.803	2;3	3.1027E-17	29886	160513_QHF_FH_JSI11Kac_6	122.39	99.166			0.95323	0.91154	22.047	12	4	Median	1.1447	0.97469	18.018	3	0	Median	0.61237	0.70952	4.2324	2	0	Median	1.0847	1.0557	16.02	4	2	Median	0.82218	0.81857	17.855	3	2	Median	452580000	196720000	255860000	123980000	46125000	77854000	48487000	23346000	25141000	157510000	61116000	96394000	122610000	66132000	56475000	32739	2470	30967	202753;202754;202755;202756;202757;202758;202759;202760;202761;202762;202763;202764	274029;274030;274031;274032;274033;274034;274035;274036;274037;274038;274039;274040;274041;274042;274043;274044;274045;274046	274037			18	
LMVHTVATFNSIK	1	Oxidation (M)	1475.7806	0.7806351	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	50.194	49.958	3	0.0008001	42777	160511_QHF_FH_JSI12i_3	65.295	46.195			0.64163	0.6504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64163	0.6504	NaN	1	1	Median	28687000	17132000	11554000	0	0	0	0	0	0	0	0	0	28687000	17132000	11554000	32740	2470	30967	202765	274047	274047		1962	1	
LMVIFSK	1	Unmodified	836.483	0.48299651	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	70.005	61.129	2	0.0055305	33563	160513_QHF_FH_JSI10Kac_6	94.407	68.298			0.91605	0.90862	3.7126	4	0	Median	1.0378	0.88627	NaN	1	0	Median	0.77861	0.93082	NaN	1	0	Median	0.94391	0.88696	NaN	1	0	Median	0.88902	0.95529	NaN	1	0	Median	1332400000	649480000	682920000	227340000	91887000	135460000	594370000	314480000	279890000	358670000	166020000	192650000	152020000	77098000	74923000	32741	4374	30968	202766;202767;202768;202769;202770	274048;274049;274050;274051;274052;274053;274054;274055	274055			8	
LMVIFSK	1	Oxidation (M)	852.47791	0.47791114	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	60.1	50.527	2	0.042767	26758	160513_QHF_FH_JSI9Kac_5	50.127	50.127			1.0348	0.98923	16.831	5	0	Median	1.2736	1.0806	10.457	2	0	Median	0.62182	0.73329	NaN	1	0	Median	1.0348	0.98923	NaN	1	0	Median	0.8903	0.92814	NaN	1	0	Median	138840000	78243000	60600000	41234000	19739000	21495000	47521000	32622000	14899000	29624000	15574000	14050000	20465000	10308000	10156000	32742	4374	30968	202771;202772;202773;202774;202775	274056;274057	274056			2	
LMVLVNAVEMAR	0	Unmodified	1344.7258	0.72576276	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.239	84.065	2	0.016558	72973	160511_QHF_FH_JSI12i_3	50.353	31.573			0.9655	0.95812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9655	0.95812	NaN	1	1	Median	27881000	14265000	13616000	0	0	0	0	0	0	0	0	0	27881000	14265000	13616000	32743	1307	30969	202776	274058	274058			1	
LMVMEIR	0	Unmodified	890.47178	0.4717799	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.26		4	4					1	3	4	3	2	3	57.813	54.053	2	0.0036689	47764	160511_QHF_FH_JSI10i_2	103.02	33.585			1.1201	1.0875	17.349	12	2	Median	1.1684	0.99834	21.492	4	1	Median	0.81061	0.99705	19.652	3	1	Median	1.153	1.1504	3.7544	2	0	Median	0.90834	1.0167	12.261	3	0	Plateau	2676200000	1259600000	1416600000	470900000	204490000	266410000	719040000	377740000	341310000	828640000	363410000	465220000	657590000	313940000	343650000	32744	2244	30970	202777;202778;202779;202780;202781;202782;202783;202784;202785;202786;202787;202788	274059;274060;274061;274062;274063;274064;274065;274066;274067;274068;274069;274070;274071	274069			13	
LMVMEIR	0	2 Oxidation (M)	922.46161	0.46160914	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	2	0	By MS/MS				15	0								1		1				39.5	29.653	2	0.028068	16333	160513_QHF_FH_JSI9Kac_5	41.502	6.6098			1.1948	1.0077	NaN	1	0	Median	1.1948	1.0077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9052200	4813400	4238800	9052200	4813400	4238800	0	0	0	0	0	0	0	0	0	32745	2244	30970	202789	274072	274072			1	
LMVNPFAYEEYRK	1	Unmodified	1658.8127	0.81266351	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		70.472	70.472	3	0.044751	62821	160511_QHF_FH_JSI11i_3	28.11	11.171			0.84543	0.80671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84543	0.80671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54297000	23465000	30831000	0	0	0	0	0	0	54297000	23465000	30831000	0	0	0	32746	4393	30971	202790	274073	274073			1	
LMVPLLK	1	Unmodified	812.51938	0.51938202	127	O00410	IPO5	Importin-5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	71.914	71.07	2	0.0080097	59702	160511_QHF_FH_JSI10i_3	85.306	26.646			1.0499	1.0096	18.642	8	0	Median	1.2191	1.0032	7.0748	2	0	Median	0.83507	0.99521	6.8636	2	0	Median	1.1853	1.1489	29.901	2	0	Median	1.1217	1.2043	29.77	2	0	Median	2280100000	1022700000	1257400000	414060000	172930000	241130000	482690000	243020000	239680000	827680000	347200000	480470000	555650000	259580000	296080000	32747	127	30972	202791;202792;202793;202794;202795;202796;202797;202798	274074;274075;274076;274077;274078;274079;274080;274081;274082;274083;274084;274085;274086;274087;274088;274089;274090;274091;274092;274093;274094;274095;274096;274097;274098;274099	274082			26	
LMVPVTVVFTR	0	Unmodified	1260.7264	0.72641468	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	88.633	83.6	2	0.00082901	44436	160513_QHF_FH_JSI10Kac_6	83.456	50.643			1.0527	1.0579	18.558	7	0	Median	1.6412	1.3544	2.6603	2	0	Median	0.81215	0.94255	11.513	2	0	Median	1.4116	1.3259	NaN	1	0	Median	0.95659	0.99927	8.0695	2	0	Median	981410000	507450000	473960000	247540000	94312000	153230000	444440000	275590000	168850000	140280000	56564000	83717000	149140000	80979000	68162000	32748	4234	30973	202799;202800;202801;202802;202803;202804;202805	274100;274101;274102;274103;274104;274105;274106	274106			7	
LMVQAVNQR	0	Unmodified	1057.5702	0.57024839	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	28.737	28.066	2	0.00085844	23569	160511_QHF_FH_JSI12i_3	72.789	61.02			0.7719	0.77595	32	5	2	Median	1.5554	1.3378	NaN	1	1	Median	0.86188	1.017	38.261	2	1	Median	0.7719	0.73263	NaN	1	0	Median	0.71976	0.72967	NaN	1	0	Median	445160000	259130000	186030000	77228000	37741000	39487000	120070000	74189000	45883000	107230000	65535000	41695000	140630000	81662000	58965000	32749	3805	30974	202806;202807;202808;202809;202810	274107;274108;274109;274110;274111;274112	274112			6	
LMVSGSAALPLPVLEK	1	Unmodified	1623.927	0.92696498	2834	Q4G176	ACSF3	Acyl-CoA synthetase family member 3, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	96.962	96.559	2;3	0.02199	83057	160511_QHF_FH_JSI12i_2	32.152	27.761			0.76431	0.79527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76431	0.79527	NaN	1	0	Median	6637100	3758500	2878600	0	0	0	0	0	0	0	0	0	6637100	3758500	2878600	32750	2834	30975	202811;202812	274113;274114	274114			2	
LMVSMLDR	0	Unmodified	963.48816	0.48815825	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	54.687	54.566	2	0.0076711	48329	160511_QHF_FH_JSI11i_3	78.324	50.217			0.79367	0.78367	5.0069	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78561	0.75641	NaN	1	1	Median	0.80182	0.81191	NaN	1	1	Median	429570000	231050000	198520000	0	0	0	0	0	0	239890000	137270000	102630000	189670000	93781000	95891000	32751	1361	30976	202813;202814;202815	274115;274116;274117	274115			3	
LMVSMLDRDMSGTMGFNEFK	1	Unmodified	2308.036	0.036016215	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	93.428	92.994	3	1.9492E-06	82970	160511_QHF_FH_JSI11i_3	89.668	80.504			0.9805	0.91415	28.779	6	1	Median	0.78397	0.64635	25.518	2	0	Median	0.99273	1.1588	6.4197	2	1	Median	0.99163	0.91671	NaN	1	0	Median	0.89441	0.91161	NaN	1	0	Median	866590000	423600000	442990000	105380000	69227000	36157000	145300000	60501000	84800000	373350000	157930000	215420000	242550000	135940000	106610000	32752	1361	30977	202816;202817;202818;202819;202820;202821	274118;274119;274120;274121;274122;274123;274124;274125;274126	274121			9	
LMVSMLDRDMSGTMGFNEFK	1	Oxidation (M)	2324.0309	0.030930837	1361	P30626	SRI	Sorcin	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	88.587	87.789	3	0.05271	73308	160511_QHF_FH_JSI10i_3	30.094	25.826			1.0771	1.0848	16.521	3	0	Plateau	1.0159	0.87049	NaN	1	0	Median	1.0523	1.203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0903	1.0848	NaN	1	0	Median	60820000	32298000	28522000	9170700	4473800	4696900	23677000	12861000	10816000	0	0	0	27972000	14963000	13010000	32753	1361	30977	202822;202823;202824	274127	274127			1	
LMWIPDTK	1	Unmodified	1002.5208	0.52083858	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.083	66.071	2	0.0045508	57533	160511_QHF_FH_JSI11i_2	67.169	49.774			0.67783	0.72572	8.9137	3	3	Median	0.79491	0.66508	NaN	1	1	Median	0.64295	0.79486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67783	0.72572	NaN	1	1	Median	99276000	55651000	43625000	26575000	12486000	14089000	30897000	17856000	13041000	0	0	0	41804000	25309000	16495000	32754	1970	30978	202825;202826;202827;202828	274128;274129;274130;274131	274130			4	
LMWLFGCPLLLDDVAR	0	Unmodified	1917.9845	0.98449664	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0			By MS/MS		9	7		1							1			2		100.88	96.118	2	6.6462E-11	51271	160513_QHF_FH_JSI11Kac_6	176.78	151.43			1.9236	1.9083	50.05	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9236	1.9083	50.05	2	2	Median	NaN	NaN	NaN	0	0	Median	204390000	54008000	150380000	0	0	0	0	0	0	204390000	54008000	150380000	0	0	0	32755	241	30979	202829;202830	274132;274133	274132			2	
LMWLYLK	1	Unmodified	965.54085	0.54084574	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	1	2	3	84.701	78.078	2	0.01348	41823	160513_QHF_FH_JSI11Kac_6	76.592	11.726			0.7812	0.9381	32.747	5	1	Plateau	0.80448	0.67514	NaN	1	0	Median	0.7812	0.9381	NaN	1	0	Median	0.85538	0.80465	NaN	1	0	Median	1.2125	1.2588	35.561	2	1	Median	731640000	390770000	340870000	182590000	107240000	75347000	303990000	165420000	138560000	138250000	65359000	72896000	106810000	52747000	54064000	32756	3990	30980	202831;202832;202833;202834;202835;202836;202837;202838	274134;274135;274136;274137;274138;274139;274140;274141;274142;274143	274135			10	
LMWLYLK	1	Oxidation (M)	981.53576	0.53576037	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	80.093	71.055	2	0.025053	37536	160513_QHF_FH_JSI12Kac_6	61.123	7.9373			1.0444	0.99193	22.954	2	0	Median	0.97451	0.84332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.1667	NaN	1	0	Median	81710000	41897000	39813000	46248000	23767000	22481000	0	0	0	0	0	0	35462000	18129000	17333000	32757	3990	30980	202839;202840	274144;274145	274145			2	
LMYGMLFSIR	0	Unmodified	1229.6301	0.63007146	5676	Q9Y5R8	TRAPPC1	Trafficking protein particle complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		87.267	79.2	2	4.2104E-09	43919	160513_QHF_FH_JSI11Kac_6	134.48	78.468			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32758	5676	30981	202841;202842;202843;202844	274146;274147;274148;274149	274146			4	
LMYGQEDVPK	1	Unmodified	1178.5642	0.56415996	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.016	37.646	2	0.0016578	33739	160511_QHF_FH_JSI10i_1	68.735	52.532			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32759	4371	30982	202845	274150	274150			1	
LMYIHSYQSYVWNNMVSK	1	Unmodified	2262.0602	0.060180776	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	1	3	2	2	80.372	74.805	2;3;4	0	40410	160513_QHF_FH_JSI10Kac_6	380.38	352.97			0.99273	0.99006	18.544	7	1	Median	1.2156	1.0213	NaN	1	0	Median	0.65453	0.76453	11.375	2	0	Median	1.026	0.94633	6.3893	2	0	Median	1.1013	1.1316	16.895	2	1	Median	5919400000	3208100000	2711400000	1005000000	451010000	554040000	2898900000	1863800000	1035100000	1409300000	607100000	802170000	606180000	286110000	320080000	32760	4202	30983	202846;202847;202848;202849;202850;202851;202852;202853	274151;274152;274153;274154;274155;274156;274157;274158;274159;274160;274161;274162	274161			12	
LMYIHSYQSYVWNNMVSK	1	Oxidation (M)	2278.0551	0.055095398	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	76.448	68.01	3	1.0016E-97	37167	160513_QHF_FH_JSI9Kac_6	239.55	220.79			0.98408	0.98476	9.6465	8	0	Median	1.1519	0.98148	11.557	2	0	Median	0.71523	0.84997	0.47518	2	0	Median	1.0586	1.0112	8.7482	2	0	Median	0.97228	1.0235	0.45415	2	0	Median	1208800000	656760000	552060000	417340000	220650000	196690000	383080000	227860000	155220000	185640000	87009000	98633000	222760000	121240000	101520000	32761	4202	30983	202854;202855;202856;202857;202858;202859;202860;202861	274163;274164;274165;274166;274167;274168;274169;274170;274171;274172;274173;274174;274175;274176;274177;274178	274170		2411;2412	16	
LMYIHSYQSYVWNNMVSK	1	2 Oxidation (M)	2294.05	0.05001002	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	71.281	62.665	3	3.7203E-12	33365	160513_QHF_FH_JSI9Kac_6	127.88	120.26			1.0696	1.0137	32.546	4	1	Median	1.0561	0.91399	14.218	2	0	Median	1.5396	1.7637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9674	1.0167	NaN	1	0	Median	104640000	53296000	51342000	60222000	30549000	29673000	12350000	3601700	8748100	0	0	0	32067000	19145000	12922000	32762	4202	30983	202862;202863;202864;202865	274179;274180;274181;274182;274183;274184	274181		2411;2412	6	
LMYIVTFMK	1	2 Oxidation (M)	1176.5923	0.59228897	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	2	0	By MS/MS	By matching			15.7	0.471								1	2	2	1			72.776	63.881	2	0.024682	32894	160513_QHF_FH_JSI9Kac_5	32.841	23.978			0.75743	0.82063	21.431	3	0	Plateau	1.1206	0.9663	27.214	2	0	Median	0.71453	0.82063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35213000	15236000	19976000	19878000	8212500	11665000	15335000	7024000	8310800	0	0	0	0	0	0	32763	3489	30984	202866;202867;202868	274185	274185		2260	1	
LMYIVTFMK	1	Oxidation (M)	1160.5974	0.59737434	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	80.304	71.174	2	0.0061236	37593	160513_QHF_FH_JSI12Kac_6	60.91	47.456			0.83561	0.88953	15.873	3	0	Median	1.0662	0.92105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71069	0.68871	NaN	1	0	Median	0.83561	0.88953	NaN	1	0	Median	200890000	101920000	98974000	85513000	45361000	40152000	0	0	0	69800000	31669000	38131000	45580000	24890000	20691000	32764	3489	30984	202869;202870;202871	274186;274187	274187		2260	2	
LMYIVTFMK	1	Unmodified	1144.6025	0.60245972	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	1	2	86.964	81.838	2	0.00037284	42489	160513_QHF_FH_JSI11Kac_6	98.392	82.777			0.89568	0.90211	63.699	8	5	Median	1.5234	1.3072	61.85	3	2	Median	1.182	1.4137	122.68	2	2	Median	0.9342	0.89682	NaN	1	0	Median	0.72859	0.7441	28.062	2	1	Median	2745000000	1233400000	1511600000	601070000	190890000	410180000	1119700000	521220000	598470000	549800000	272790000	277010000	474480000	248490000	225990000	32765	3489	30984	202872;202873;202874;202875;202876;202877;202878;202879	274188;274189;274190;274191;274192;274193;274194;274195;274196;274197;274198	274188			11	
LMYPDDDEAMLQK	1	Unmodified	1567.6898	0.68983076	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	60.109	59.568	2	0.0012775	54204	160511_QHF_FH_JSI12i_1	82.261	66.995			0.51927	0.51549	54.152	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78638	0.75598	NaN	1	1	Median	0.34289	0.3515	NaN	1	0	Median	102470000	64789000	37684000	0	0	0	0	0	0	47887000	25717000	22169000	54586000	39072000	15515000	32766	3376	30985	202880;202881	274199;274200;274201	274200			3	
LNAAHYSTGK	1	Unmodified	1060.5302	0.53015772	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	10.333	10.428	2	0.00073346	7705	160511_QHF_FH_JSI12i_3	70.1	50.613			0.8677	0.89616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8677	0.89616	NaN	1	0	Median	40977000	20113000	20864000	0	0	0	0	0	0	0	0	0	40977000	20113000	20864000	32767	2392	30986	202882;202883	274202;274203	274203			2	
LNADVLK	1	Unmodified	771.44905	0.44905385	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	34.248	33.856	2	0.04193	30683	160511_QHF_FH_JSI12i_1	46.426	15.136			0.9248	0.98305	9.4044	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77947	0.91786	NaN	1	0	Median	1.1648	1.1055	NaN	1	0	Median	0.9248	0.98305	NaN	1	0	Median	210820000	106680000	104140000	0	0	0	88920000	47174000	41746000	72214000	36008000	36206000	49682000	23499000	26183000	32768	2591	30987	202884;202885;202886	274204	274204			1	
LNAGYSNTATEWSQPR	0	Unmodified	1793.8333	0.83327561	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	47.333	46.378	2	1.2328E-05	39893	160511_QHF_FH_JSI11i_2	119.69	107.82			0.91018	0.95098	12.761	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0503	1.0408	NaN	1	0	Median	0.78874	0.86892	NaN	1	0	Median	44458000	20531000	23927000	0	0	0	0	0	0	29596000	13622000	15974000	14862000	6909600	7952700	32769	560	30988	202887;202888	274205;274206;274207	274206			3	
LNAILFK	1	Unmodified	817.50617	0.5061748	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	2	2	2	3	62.839	58.375	2	0.024235	51678	160511_QHF_FH_JSI10i_2	58.167	8.0477			1.0031	0.98959	22.168	9	3	Median	1.4671	1.2302	30.785	2	1	Median	0.67043	0.81416	24.409	2	1	Median	1.0203	0.98697	1.0082	2	1	Median	1.0813	1.1551	17.222	3	0	Plateau	636450000	278940000	357520000	120300000	29932000	90368000	133390000	68824000	64566000	162360000	72409000	89955000	220400000	107770000	112630000	32770	432	30989	202889;202890;202891;202892;202893;202894;202895;202896;202897	274208;274209;274210;274211;274212;274213;274214	274213			7	
LNAIYQNNLTK	1	Unmodified	1290.6932	0.6932003	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.31	2	5	4				2			2	6	3	2	45.292	42.715	2	2.6695E-05	36525	160511_QHF_FH_JSI12i_2	99.568	67.56			0.97295	1.0354	92.763	12	5	Median	1.3296	1.1122	2.2116	2	0	Median	0.81477	0.97181	108.7	5	3	Median	1.0071	1.0184	149.73	3	2	Median	0.96296	1.0267	3.5334	2	0	Median	1159900000	533870000	625990000	190220000	75256000	114960000	374480000	207980000	166500000	311360000	118980000	192380000	283800000	131660000	152150000	32771	765	30990	202898;202899;202900;202901;202902;202903;202904;202905;202906;202907;202908;202909;202910	274215;274216;274217;274218;274219;274220;274221;274222;274223;274224;274225;274226;274227;274228;274229	274217			15	
LNANVMHGK	1	Unmodified	982.50183	0.50183448	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	14.948	14.98	3	0.0085448	12249	160511_QHF_FH_JSI11i_3	46.457	35.138			0.4411	0.4316	29.823	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37578	0.34954	NaN	1	1	Median	0.51777	0.53293	NaN	1	1	Median	167200000	114260000	52943000	0	0	0	0	0	0	102340000	66953000	35385000	64861000	47302000	17558000	32772	2947	30991	202911;202912	274230;274231	274230			2	
LNASLSVHPEK	1	Unmodified	1193.6404	0.64043645	3694	Q8TBB5	KLHDC4	Kelch domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.633	29.579	3	0.00057033	24916	160511_QHF_FH_JSI12i_3	71.806	37.936			1.6851	1.9177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6851	1.9177	NaN	1	1	Median	73325000	32483000	40842000	0	0	0	0	0	0	0	0	0	73325000	32483000	40842000	32773	3694	30992	202913	274232	274232			1	
LNATNIELATVQPGQNFHMFTK	1	Oxidation (M)	2489.2373	0.23729352	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							3	3	1	1	75.567	74.706	3;4	3.3426E-16	66911	160511_QHF_FH_JSI11i_3	138.82	130.74			0.9393	0.99231	29.052	8	4	Median	1.4297	1.1446	29.099	3	2	Median	0.85942	1.0031	37.611	3	2	Median	1.0235	0.98168	NaN	1	0	Median	0.9028	0.92282	NaN	1	0	Median	1122100000	578660000	543430000	234920000	101500000	133420000	320290000	180270000	140020000	310920000	153580000	157340000	255950000	143310000	112650000	32774	1300	30993	202914;202915;202916;202917;202918;202919;202920;202921	274233;274234;274235;274236;274237;274238;274239;274240;274241;274242;274243;274244;274245;274246;274247;274248;274249;274250;274251	274236		949	19	
LNATNIELATVQPGQNFHMFTK	1	Unmodified	2473.2424	0.2423789	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.06		6	13						4	8	5	5	5	85.541	83.755	2;3;4	2.6302E-85	76168	160511_QHF_FH_JSI11i_3	299.58	286.17			0.95272	0.98032	15.626	22	6	Median	1.2086	1.0119	24.548	8	3	Median	0.81671	0.98265	4.1847	5	0	Median	1.0554	0.99764	7.2262	5	3	Median	0.82672	0.87054	3.8736	4	0	Median	16079000000	8327600000	7751100000	1992200000	953720000	1038400000	3160900000	1659200000	1501700000	7983100000	4234000000	3749100000	2942500000	1480700000	1461900000	32775	1300	30993	202922;202923;202924;202925;202926;202927;202928;202929;202930;202931;202932;202933;202934;202935;202936;202937;202938;202939;202940;202941;202942;202943;202944	274252;274253;274254;274255;274256;274257;274258;274259;274260;274261;274262;274263;274264;274265;274266;274267;274268;274269;274270;274271;274272;274273;274274;274275;274276;274277;274278;274279;274280;274281;274282;274283;274284;274285;274286;274287;274288;274289;274290;274291;274292;274293;274294;274295;274296;274297;274298;274299;274300;274301;274302	274252			51	
LNAVVNDFWAEISESVDK	1	Unmodified	2034.9898	0.98983583	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.93	101.82	3	3.6579E-05	89594	160511_QHF_FH_JSI11i_2	88.264	78.342			1.0124	1.0196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0124	1.0196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115600000	60452000	55146000	0	0	0	0	0	0	115600000	60452000	55146000	0	0	0	32776	4272	30994	202945	274303	274303			1	
LNCQVIGASVDSHFCHLAWVNTPK	1	Unmodified	2752.3214	0.32137427	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	6	5	2	1	79.262	76.557	3;4	5.9357E-65	39449	160513_QHF_FH_JSI10Kac_6	200.98	188.17			1.0358	0.97075	29.493	14	2	Median	1.3052	1.0531	20.772	6	2	Median	0.65205	0.78374	2.3589	5	0	Median	1.213	1.173	67.267	2	0	Median	0.94931	0.97344	NaN	1	0	Median	8469300000	4718400000	3750800000	1068500000	371250000	697230000	3697500000	2331900000	1365600000	1878800000	1044000000	834790000	1824500000	971260000	853210000	32777	2249	30995	202946;202947;202948;202949;202950;202951;202952;202953;202954;202955;202956;202957;202958;202959	274304;274305;274306;274307;274308;274309;274310;274311;274312;274313;274314;274315;274316;274317;274318;274319;274320;274321;274322;274323;274324;274325;274326;274327;274328;274329;274330;274331;274332;274333;274334	274333			31	
LNDALDRLEELK	1	Unmodified	1427.762	0.76200815	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.741	63.456	3	0.016562	54778	160511_QHF_FH_JSI12i_3	43.991	30.028			0.64251	0.65162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64251	0.65162	NaN	1	1	Median	41704000	26720000	14984000	0	0	0	0	0	0	0	0	0	41704000	26720000	14984000	32778	5458	30996	202960	274335	274335			1	
LNDFASTVR	0	Unmodified	1021.5193	0.51925868	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.15	2	4					1	2		1	2	4	2	36.161	32.329	2	0.00017136	27603	160511_QHF_FH_JSI11i_2	87.476	47.373			0.83176	0.88328	30.685	9	0	Median	0.9786	0.82466	NaN	1	0	Median	0.65933	0.7879	21.065	2	0	Median	0.81081	0.81675	39.178	4	0	Median	0.95939	1.0631	18.13	2	0	Median	2489300000	1342900000	1146400000	378210000	174500000	203710000	735070000	435260000	299810000	888610000	468860000	419750000	487410000	264260000	223150000	32779	1179	30997	202961;202962;202963;202964;202965;202966;202967;202968;202969	274336;274337;274338;274339;274340;274341;274342;274343	274341			8	
LNDGNEYLFQAK	1	Unmodified	1410.6779	0.67794416	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.718	51.052	2	0.00073594	46455	160511_QHF_FH_JSI12i_1	79.07	55.694			0.23676	0.25003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23676	0.25003	NaN	1	1	Median	109030000	88434000	20593000	0	0	0	0	0	0	0	0	0	109030000	88434000	20593000	32780	2162	30998	202970	274344	274344			1	
LNDGSQITYEK	1	Unmodified	1266.6092	0.6091959	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	29.39	26.087	2	1.2401E-07	22945	160511_QHF_FH_JSI10i_1	124.42	92.103			0.95645	0.95972	21.616	6	0	Median	1.6889	1.3974	NaN	1	0	Median	0.86402	1.0275	27.098	2	0	Median	0.90179	0.87694	11.328	2	0	Median	0.92675	0.96946	NaN	1	0	Median	2253500000	1073900000	1179700000	492650000	186650000	306000000	656570000	321580000	335000000	519060000	267330000	251730000	585260000	298300000	286960000	32781	736	30999	202971;202972;202973;202974;202975;202976	274345;274346;274347;274348;274349;274350	274349			6	
LNDHFPLVVWQTGSGTQTNMNVNEVISNR	0	Unmodified	3269.5888	0.58875859	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.2	5.42		2	2						1	1	2		2	93.056	91.265	3	9.5841E-101	44631	160513_QHF_FH_JSI10Kac_6	230.24	199.7			0.96789	1.003	21.41	3	1	Median	1.7049	1.4073	NaN	1	0	Median	0.79875	0.94688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96789	1.003	NaN	1	1	Median	278920000	141780000	137130000	70669000	25441000	45228000	164790000	88080000	76708000	0	0	0	43460000	28261000	15199000	32782	887	31000	202977;202978;202979;202980;202981	274351;274352;274353;274354;274355;274356;274357;274358	274358			8	
LNDHFPLVVWQTGSGTQTNMNVNEVISNR	0	Oxidation (M)	3285.5837	0.58367321	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS			2	0		2								1	1			87.398	86.876	3	2.6816E-11	76533	160511_QHF_FH_JSI9i_2	71.528	69.163			1.0286	1.042	6.5391	2	0	Median	1.3077	1.0913	NaN	1	0	Median	0.80899	0.99491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52644000	26692000	25952000	25234000	9598300	15635000	27410000	17093000	10317000	0	0	0	0	0	0	32783	887	31000	202982;202983	274359;274360;274361;274362;274363;274364	274361		448	6	
LNDHLLLVYTGK	1	Unmodified	1384.7715	0.77145062	3493	Q8N0W3	FUK	L-fucose kinase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				71.391	62.794	3	0.0017653	33402	160513_QHF_FH_JSI9Kac_6	52.265	49.043			1.1616	0.98769	NaN	1	0	Median	1.1616	0.98769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18556000	9039300	9516800	18556000	9039300	9516800	0	0	0	0	0	0	0	0	0	32784	3493	31001	202984	274365	274365			1	
LNDLIQR	0	Unmodified	870.49232	0.49231565	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	30.735	30.081	2	0.010853	27812	160511_QHF_FH_JSI11i_3	73.039	37.933			0.88961	0.8002	31.444	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.88008	1.0806	NaN	1	0	Median	1.2442	1.1995	52.261	2	0	Median	0.89924	0.99996	NaN	1	0	Median	853300000	441440000	411860000	0	0	0	189220000	97189000	92034000	451620000	229150000	222470000	212450000	115100000	97356000	32785	1805	31002	202985;202986;202987;202988	274366;274367;274368	274366			3	
LNDMASTDDGTLQSR	0	Unmodified	1622.7206	0.72061362	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.258	31.655	2	5.4921E-10	28227	160511_QHF_FH_JSI11i_1	150.21	135.8			0.8196	1.0527	17.133	4	0	Linear	1.729	1.4083	NaN	1	0	Median	0.93536	1.0879	NaN	1	0	Median	1.0479	1.0186	NaN	1	0	Median	0.91996	0.95147	NaN	1	0	Median	609690000	300590000	309110000	133620000	57120000	76504000	162240000	88954000	73290000	143680000	72560000	71122000	170140000	81956000	88189000	32786	4759	31003	202989;202990;202991;202992	274369;274370;274371;274372;274373;274374;274375;274376	274369			8	
LNDMEPSK	1	Unmodified	932.42733	0.42733213	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	15.023	14.569	2	0.0048315	12297	160511_QHF_FH_JSI12i_1	67.494	48.017			1.3788	1.4584	23.995	4	0	Median	1.2195	0.99833	NaN	1	0	Median	1.3358	1.5527	NaN	1	0	Median	1.4232	1.3698	NaN	1	0	Median	1.6375	1.7412	NaN	1	0	Median	3814900000	1737400000	2077500000	833260000	421560000	411690000	1050600000	462510000	588060000	940260000	398130000	542130000	990840000	455190000	535660000	32787	5185	31004	202993;202994;202995;202996	274377;274378;274379;274380	274377			4	
LNDMEPSK	1	Oxidation (M)	948.42225	0.42224675	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	11.213	3.954	2	0.048509	4464	160513_QHF_FH_JSI12Kac_3	41.448	30.379			0.75601	0.88649	8.5462	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75601	0.88649	NaN	1	0	Median	0.94746	0.9362	NaN	1	0	Median	0.73734	0.79177	NaN	1	0	Median	23379000	12706000	10673000	0	0	0	4309300	2103400	2206000	12960000	6604500	6355500	6109500	3998000	2111500	32788	5185	31004	202997;202998;202999	274381;274382	274382			2	
LNDMYGDYK	1	Unmodified	1117.475	0.4750106	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.554	32.315	2	0.057401	28896	160511_QHF_FH_JSI11i_1	34.206	22.437			1.4354	1.3469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4354	1.3469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63762000	26227000	37535000	0	0	0	0	0	0	63762000	26227000	37535000	0	0	0	32789	1812	31005	203000	274383	274383			1	
LNDPFQPFPGNDSPK	1	Unmodified	1671.7893	0.78928553	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		68.556	68.149	2	0.017484	61934	160511_QHF_FH_JSI11i_1	50.207	40.552			3.5635	3.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5635	3.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33928000	6127900	27800000	0	0	0	0	0	0	33928000	6127900	27800000	0	0	0	32790	1537	31006	203001	274384	274384			1	
LNDSILQATEQR	0	Unmodified	1386.7103	0.71030693	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								3	2	2	2	49.905	48.988	2	8.8184E-16	41885	160511_QHF_FH_JSI12i_2	157.68	132.82			0.89051	0.79228	38.017	8	6	Median	0.90278	0.73656	45.862	3	2	Median	0.75377	0.89796	59.581	2	2	Median	0.8784	0.85222	NaN	1	1	Median	0.70013	0.75431	42.96	2	1	Median	1139400000	659160000	480220000	393520000	215670000	177850000	264180000	174940000	89241000	218050000	121540000	96502000	263640000	147000000	116630000	32791	1085	31007	203002;203003;203004;203005;203006;203007;203008;203009;203010	274385;274386;274387;274388;274389;274390;274391;274392;274393;274394	274388			10	
LNDSILQATEQRR	0	Unmodified	1542.8114	0.81141795	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			42.743	41.191	3	0.019108	34408	160511_QHF_FH_JSI10i_3	24.964	17.24			0.79049	0.91797	30.692	3	1	Plateau	1.142	0.93432	43.381	2	1	Median	0.79049	0.91797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191740000	108350000	83391000	68628000	31627000	37001000	123110000	76723000	46390000	0	0	0	0	0	0	32792	1085	31008	203011;203012;203013	274395;274396;274397;274398	274396			4	
LNDYIFSFDK	1	Unmodified	1260.6027	0.60265396	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.38	4	4						4		3	3	3	3	79.219	75.302	2	1.0953E-07	70148	160511_QHF_FH_JSI10i_1	121.83	102.04			1.0069	1.0504	20.165	12	0	Median	1.4089	1.1973	25.368	3	0	Median	0.92548	1.1109	12.911	3	0	Plateau	1.1903	1.1908	13.356	3	0	Plateau	1.0931	1.1998	22.975	3	0	Plateau	1392700000	753270000	639480000	282690000	137420000	145270000	316210000	192550000	123650000	421630000	226790000	194840000	372220000	196500000	175720000	32793	1818	31009	203014;203015;203016;203017;203018;203019;203020;203021;203022;203023;203024;203025	274399;274400;274401;274402;274403;274404;274405;274406;274407;274408;274409;274410;274411;274412;274413;274414;274415;274416;274417;274418;274419;274420	274407			22	
LNEAAAGLNQAATELVQASR	0	Unmodified	2026.0443	0.044331016	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								5	4	4	3	80.204	79.599	2;3	7.3823E-34	69917	160511_QHF_FH_JSI11i_2	196.66	159.23			0.967	0.97215	13.728	16	2	Median	1.2293	1.0322	18.578	5	2	Median	0.76307	0.92442	9.8677	4	0	Median	0.92377	0.90973	5.9485	4	0	Median	1.1404	1.1976	12.09	3	0	Plateau	1390800000	667550000	723270000	382720000	162500000	220230000	335620000	177230000	158390000	463140000	227740000	235390000	209340000	100090000	109260000	32794	5616	31010	203026;203027;203028;203029;203030;203031;203032;203033;203034;203035;203036;203037;203038;203039;203040;203041	274421;274422;274423;274424;274425;274426;274427;274428;274429;274430;274431;274432;274433;274434;274435;274436;274437;274438;274439;274440;274441;274442	274438			22	
LNEADHNGDLALDLALSR	0	Unmodified	1935.965	0.96501806	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.757	69.806	3	0.054716	60987	160511_QHF_FH_JSI11i_2	17.148	6.8668			0.31287	0.31867	19.452	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28418	0.27772	NaN	1	1	Median	0.34446	0.36566	NaN	1	1	Median	75441000	60508000	14933000	0	0	0	0	0	0	48981000	40496000	8485900	26459000	20012000	6446900	32795	5222	31011	203042;203043	274443;274444	274444			2	
LNEAIKLAKGQPDTVQDALR	2	2 Acetyl (K)	2263.2172	0.21721	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	2	0	0	2				By MS/MS	16	0									1				1	93.001	83.559	4	0.053488	45152	160513_QHF_FH_JSI12Kac_6	35.748	24.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62067000	0	62067000	0	0	0	0	0	0	0	0	0	62067000	0	62067000	32796	4703	31012	203044	274445	274445			1	
LNEAQPSTIATSMR	0	Unmodified	1517.7508	0.75079153	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.45	5	4					3			3	3	3	3	45.795	42.311	2	2.6479E-15	36402	160511_QHF_FH_JSI11i_2	167.2	140.76			0.95368	0.99977	7.1726	11	0	Median	1.1216	0.94764	13.799	2	0	Median	0.77484	0.95659	5.0731	3	0	Plateau	0.98166	1.0228	7.101	3	0	Plateau	0.95368	1.0062	6.6736	3	0	Median	2808500000	1440900000	1367600000	389650000	168420000	221230000	731970000	406770000	325210000	932420000	469310000	463110000	754410000	396380000	358030000	32797	1881	31013	203045;203046;203047;203048;203049;203050;203051;203052;203053;203054;203055;203056	274446;274447;274448;274449;274450;274451;274452;274453;274454;274455;274456;274457;274458;274459;274460;274461;274462;274463;274464	274461			19	
LNEAQPSTIATSMR	0	Oxidation (M)	1533.7457	0.74570615	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	33.195	28.962	2	0.00057266	25777	160511_QHF_FH_JSI10i_1	76.655	60.993			0.81177	0.78992	33.539	7	2	Median	0.59877	0.49361	NaN	1	0	Median	0.51242	0.60942	NaN	1	0	Median	1.0042	0.94844	31.066	2	1	Median	0.92599	0.97447	21.825	3	1	Median	183930000	109720000	74209000	24019000	14362000	9657100	44949000	28418000	16532000	52583000	28379000	24204000	62379000	38562000	23817000	32798	1881	31013	203057;203058;203059;203060;203061;203062;203063	274465;274466;274467;274468;274469;274470	274467		1559	6	
LNECVDHTPK	1	Unmodified	1211.5605	0.56047157	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.42		5					2			1	1	3	2	15.307	12.784	2;3	1.744E-06	10253	160511_QHF_FH_JSI12i_2	94.616	80.937			1.0545	1.1742	29.022	7	3	Median	1.7356	1.4753	NaN	1	1	Median	0.82806	0.97701	NaN	1	0	Median	0.83808	0.83053	31.804	3	2	Median	1.2508	1.3763	22.461	2	0	Median	240460000	124930000	115530000	10430000	4051100	6379100	16964000	8696800	8267000	79597000	41235000	38362000	133470000	70944000	62525000	32799	2093	31014	203064;203065;203066;203067;203068;203069;203070	274471;274472;274473;274474;274475;274476;274477;274478;274479	274471			9	
LNEDKPK	2	Unmodified	842.44978	0.44978213	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		5.5229	5.3274	3	0.0096135	3345	160511_QHF_FH_JSI10i_2	47.849	23.876			1.1231	1.171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1231	1.171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1016700000	603220000	413430000	0	0	0	0	0	0	1016700000	603220000	413430000	0	0	0	32800	2158	31015	203071;203072	274480;274481	274481			2	
LNEDMACSVAGITSDANVLTNELR	0	Unmodified	2592.216	0.21596573	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	100.8	100.71	2;3	1.0801E-106	91417	160511_QHF_FH_JSI11i_1	262.21	242.64			0.99271	1.0705	27.056	6	1	Median	1.3774	1.1083	NaN	1	1	Median	0.89375	1.0687	5.174	2	0	Median	0.85955	0.83454	30.312	2	0	Median	1.472	1.5715	NaN	1	0	Median	1055900000	496910000	558970000	60405000	20394000	40012000	368540000	194840000	173700000	368720000	186220000	182500000	258210000	95454000	162760000	32801	1267	31016	203073;203074;203075;203076;203077;203078	274482;274483;274484;274485;274486;274487	274483			6	
LNEFMAGFYIITNK	1	Unmodified	1659.8331	0.8330646	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			1	2	91.728	82.368	3	0.0028936	44449	160513_QHF_FH_JSI12Kac_6	55.344	45.148			1.0865	1.0224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0865	1.0224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28909000	13490000	15419000	0	0	0	0	0	0	28909000	13490000	15419000	0	0	0	32802	4989	31017	203079;203080;203081	274488;274489;274490	274490			3	
LNEGVVEFASYGDLK	1	Unmodified	1639.8094	0.80935227	2377	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	75.936	75.247	2	1.0718E-14	66241	160511_QHF_FH_JSI11i_2	160.69	127.46			0.93607	0.92821	26.831	10	5	Median	1.2174	1.047	10.338	2	1	Median	0.63407	0.77554	18.717	2	1	Median	0.90119	0.8386	21.417	3	2	Median	0.97231	0.99913	42.604	3	1	Median	502460000	244490000	257970000	71603000	28349000	43254000	105940000	59463000	46482000	179650000	85852000	93802000	145260000	70827000	74436000	32803	2377	31018	203082;203083;203084;203085;203086;203087;203088;203089;203090;203091;203092	274491;274492;274493;274494;274495;274496;274497;274498;274499;274500;274501;274502;274503;274504;274505;274506;274507;274508	274506			18	
LNEHFLNTTDFLDTIK	1	Unmodified	1919.9629	0.9628928	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	90.484	90.021	2;3	6.697E-05	79811	160511_QHF_FH_JSI10i_2	84.653	77.88			0.75507	0.84809	38.505	4	4	Median	NaN	NaN	NaN	0	0	Median	0.73238	0.87766	NaN	1	1	Median	1.2121	1.1496	59.155	2	2	Median	0.72078	0.81952	NaN	1	1	Median	154890000	79250000	75637000	0	0	0	91351000	52692000	38659000	53701000	19329000	34372000	9834600	7228800	2605800	32804	1635	31019	203093;203094;203095;203096	274509;274510;274511;274512	274512			4	
LNEHFSK	1	Unmodified	873.43447	0.43446642	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.536	11.8	3	0.05647	9203	160511_QHF_FH_JSI12i_2	16.473	5.5999			0.81035	0.87962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81035	0.87962	NaN	1	0	Median	31207000	18459000	12748000	0	0	0	0	0	0	0	0	0	31207000	18459000	12748000	32805	5220	31020	203097	274513	274513			1	
LNEILQAR	0	Unmodified	955.54508	0.5450795	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	33.493	32.777	2	0.015892	28556	160511_QHF_FH_JSI9i_2	50.04	16.244			1.055	1.0341	21.964	6	1	Median	1.1394	0.98433	NaN	1	0	Median	0.88187	1.0539	27.838	2	0	Median	1.248	1.2224	16.671	2	1	Median	0.70265	0.78331	NaN	1	0	Median	1221300000	604520000	616810000	188260000	71233000	117030000	332300000	162290000	170020000	448470000	217940000	230530000	252290000	153060000	99228000	32806	40	31021	203098;203099;203100;203101;203102;203103	274514;274515;274516;274517;274518;274519;274520;274521	274518			8	
LNEINEK	1	Unmodified	858.4447	0.44469675	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.83	4	3				2				2	3	3	1	13.402	11.424	2	0.006233	9497	160511_QHF_FH_JSI11i_1	91.9	18.284			0.99155	0.98574	15.396	9	0	Median	1.244	1.0496	10.182	2	0	Median	0.90458	1.0537	16.093	3	0	Plateau	0.99936	0.9837	6.4621	3	0	Plateau	1.2668	1.3518	NaN	1	0	Median	5187800000	2732800000	2455000000	1146000000	451180000	694800000	1146900000	638740000	508140000	1527400000	822740000	704620000	1367600000	820180000	547420000	32807	1372	31022	203104;203105;203106;203107;203108;203109;203110;203111;203112	274522;274523;274524;274525;274526;274527;274528	274523			7	
LNEIVDQIK	1	Unmodified	1070.5972	0.59717465	4709	Q9H446	RWDD1	RWD domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.952	46.293	2	0.0024294	42044	160511_QHF_FH_JSI12i_1	74.165	17.731			0.77268	0.78462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77268	0.78462	NaN	1	1	Median	177390000	97844000	79543000	0	0	0	0	0	0	0	0	0	177390000	97844000	79543000	32808	4709	31023	203113	274529	274529			1	
LNEIVGNEDTVSR	0	Unmodified	1444.7158	0.71578623	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	39.117	35.689	2	5.689E-05	31534	160511_QHF_FH_JSI9i_1	108.72	78.152			0.95986	1.0224	8.8611	6	0	Median	1.2281	1.0256	NaN	1	0	Median	0.73633	0.85212	NaN	1	0	Median	1.0453	1.0059	11.086	2	0	Median	0.95671	1.0266	1.0114	2	0	Median	824570000	432030000	392530000	144860000	69205000	75653000	200640000	116590000	84050000	238560000	112820000	125740000	240510000	133420000	107090000	32809	1429	31024	203114;203115;203116;203117;203118;203119	274530;274531;274532;274533;274534;274535;274536;274537;274538;274539	274538			10	
LNELLVK	1	Unmodified	827.51165	0.5116541	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	41.155	40.336	2	0.015056	35427	160511_QHF_FH_JSI9i_2	65.252	15.894			0.8917	0.79417	19.621	9	0	Median	0.9153	0.76298	1.512	2	0	Median	0.63223	0.77043	17.339	3	0	Median	0.94197	0.93865	23.638	2	0	Median	1.0475	1.1327	0.56046	2	0	Median	3362000000	1748000000	1614000000	605600000	326120000	279480000	856120000	481570000	374550000	1099800000	529320000	570530000	800400000	410960000	389440000	32810	2328	31025	203120;203121;203122;203123;203124;203125;203126;203127;203128	274540;274541;274542;274543;274544;274545;274546;274547;274548;274549;274550;274551;274552	274548			13	
LNENHSGELWK	1	Unmodified	1325.6364	0.6364137	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.61	27.246	2	0.0016863	22849	160511_QHF_FH_JSI11i_2	61.78	23.693			1.3624	1.3549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3624	1.3549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33496000	11868000	21628000	0	0	0	0	0	0	33496000	11868000	21628000	0	0	0	32811	2403	31026	203129	274553;274554	274553			2	
LNEQASEEILK	1	Unmodified	1272.6561	0.65614609	2164	Q01105	SET	Protein SET	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.052	41.132	2	3.3846E-05	36390	160511_QHF_FH_JSI9i_1	98.182	55.584			0.65729	0.61742	12.066	2	0	Median	0.80861	0.67241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53428	0.56693	NaN	1	0	Median	756180000	447880000	308300000	327900000	162710000	165190000	0	0	0	0	0	0	428280000	285170000	143110000	32812	2164	31027	203130;203131;203132;203133	274555;274556;274557;274558	274558			4	
LNEQEGVPSVFNPPPSRPLQVNTADHR	0	Unmodified	2997.5057	0.50568088	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.978	63.477	4	0.0021542	52070	160511_QHF_FH_JSI9i_3	31.441	29.001			0.76456	0.74751	16.936	2	1	Median	1.0207	0.84262	NaN	1	0	Median	0.57268	0.66315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94665000	49838000	44827000	70303000	32084000	38219000	24362000	17754000	6608200	0	0	0	0	0	0	32813	4013	31028	203134;203135	274559;274560	274560			2	
LNEQKLAQLEEAK	2	Acetyl (K)	1554.8253	0.82533668	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			72.827	62.219	2	0.00033198	33221	160513_QHF_FH_JSI10Kac_4	95.018	70.637			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2072500	0	2072500	0	0	0	2072500	0	2072500	0	0	0	0	0	0	32814	1246	31029	203136	274561	274561	1144		1	
LNEQQSVLQR	0	Unmodified	1213.6415	0.64149908	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	25.907	25.016	2	0.00026755	21561	160511_QHF_FH_JSI9i_2	90.108	53.774			0.93489	0.96068	4.5731	4	0	Median	1.0897	0.93477	NaN	1	0	Median	0.72852	0.90557	NaN	1	0	Median	0.99406	0.99738	NaN	1	0	Median	0.87925	0.98731	NaN	1	0	Median	298950000	161130000	137820000	85933000	44530000	41404000	68501000	44111000	24391000	80148000	40394000	39754000	64364000	32095000	32269000	32815	2560	31030	203137;203138;203139;203140	274562;274563;274564	274563			3	
LNEQSPTR	0	Unmodified	943.47231	0.47230849	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.02	5	3				3	3			3	4	4	3	9.9269	6.338	2	0.0007934	4684	160513_QHF_FH_JSI11Kac_4	105.57	58.501			0.9998	1.0339	7.4594	14	0	Median	1.2815	1.0449	5.3946	3	0	Plateau	0.88668	1.0646	8.123	4	0	Median	1.0467	1.0413	8.2637	4	0	Median	0.85384	0.90859	8.216	3	0	Plateau	3337700000	1633500000	1704200000	791300000	350120000	441170000	975480000	516240000	459240000	857240000	404770000	452480000	713700000	362380000	351320000	32816	520	31031	203141;203142;203143;203144;203145;203146;203147;203148;203149;203150;203151;203152;203153;203154	274565;274566;274567;274568;274569;274570;274571;274572;274573;274574;274575;274576	274571			12	
LNEQYEHASIHLWDLLEGK	1	Unmodified	2294.1331	0.13314602	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.62	2.77			20						1		1	2	18	95.694	95.421	3;4	3.466E-06	83567	160511_QHF_FH_JSI12i_3	87.16	82.892			0.94179	0.97926	27.766	20	10	Median	NaN	NaN	NaN	0	0	Median	0.80583	0.96937	NaN	1	0	Median	1.0508	0.99695	24.819	2	0	Median	0.95739	0.98926	29.556	17	10	Median	780440000	401750000	378690000	0	0	0	148510000	79369000	69138000	27411000	13414000	13997000	604520000	308960000	295560000	32817	2536	31032	203155;203156;203157;203158;203159;203160;203161;203162;203163;203164;203165;203166;203167;203168;203169;203170;203171;203172;203173;203174;203175	274577;274578;274579;274580;274581;274582;274583;274584;274585;274586;274587;274588;274589;274590;274591;274592;274593;274594;274595;274596;274597;274598;274599	274579			22	
LNESTFDTQITK	1	Unmodified	1395.6882	0.6881745	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.17	0.373	5	1								2	3	1		48.258	47.48	2	1.0101E-15	42930	160511_QHF_FH_JSI11i_1	155.97	126.5			1.0422	0.93319	46.871	6	5	Median	1.5189	1.2513	38.258	2	2	Median	0.85939	1.0161	57.493	3	3	Plateau	0.93809	0.91217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3940000000	1782500000	2157400000	1482300000	529340000	952940000	1603600000	794270000	809380000	854030000	458900000	395130000	0	0	0	32818	2094	31033	203176;203177;203178;203179;203180;203181	274600;274601;274602;274603;274604;274605;274606;274607;274608;274609	274601			10	
LNESTFDTQITKK	2	Unmodified	1523.7831	0.78313752	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	40.204	40.008	2;3	0.00021796	34076	160511_QHF_FH_JSI12i_3	79.659	57.666			1.5855	1.6374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5855	1.6374	NaN	1	0	Median	23999000	11240000	12758000	0	0	0	0	0	0	0	0	0	23999000	11240000	12758000	32819	2094	31034	203182;203183	274610;274611	274611			2	
LNETLSSFSDDNK	1	Unmodified	1468.6682	0.66816734	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		44.863	44.184	2	0.00021894	39925	160511_QHF_FH_JSI11i_1	149.23	120.5			1.288	1.4791	31.655	3	3	Plateau	1.288	1.0547	NaN	1	1	Median	1.6145	1.8976	NaN	1	1	Median	1.1871	1.1529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	254050000	124240000	129810000	72483000	31333000	41149000	93283000	46955000	46328000	88284000	45956000	42328000	0	0	0	32820	4152	31035	203184;203185;203186	274612;274613;274614	274612			3	
LNETTDPDKK	2	Unmodified	1159.5721	0.57208211	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.2826	8.0448	2	0.0035135	5910	160511_QHF_FH_JSI10i_1	66.435	37.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32821	1665	31036	203187;203188;203189	274615;274616;274617	274617			3	
LNEVSSDANRENAAAESGSESSSQEATPEK	1	Unmodified	3093.3607	0.36065195	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.241	25.67	3	1.2488E-31	22554	160511_QHF_FH_JSI11i_1	129.64	123.98			0.81168	0.79997	15.503	4	0	Median	0.84493	0.70707	NaN	1	0	Median	0.77974	0.90507	NaN	1	0	Median	0.96669	0.92621	NaN	1	0	Median	0.67927	0.69408	NaN	1	0	Median	269610000	122490000	147110000	78607000	25663000	52945000	71068000	38182000	32886000	51710000	22292000	29418000	68222000	36357000	31865000	32822	4759	31037	203190;203191;203192;203193	274618;274619;274620;274621;274622;274623;274624;274625;274626	274618			9	
LNFANPPFK	1	Unmodified	1046.5549	0.5549159	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	61.445	61.308	2	0.0010782	54402	160511_QHF_FH_JSI10i_2	74.127	38.772			1.3862	1.3437	9.6893	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3362	1.2547	NaN	1	1	Median	1.438	1.4389	NaN	1	1	Median	136520000	58745000	77777000	0	0	0	0	0	0	58359000	27277000	31083000	78163000	31468000	46695000	32823	1575	31038	203194;203195;203196;203197	274627;274628;274629;274630	274629			4	
LNFAVASR	0	Unmodified	876.48175	0.48175096	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.22			4					2	4	3	3	2	2	46.307	40.173	2	0.002025	34335	160511_QHF_FH_JSI12i_3	83.206	40.206			0.94301	0.943	7.7739	10	0	Median	1.3664	1.0796	8.0822	3	0	Plateau	0.74835	0.89456	11.409	3	0	Median	1.0229	0.96766	6.1848	2	0	Median	0.88883	0.93948	3.063	2	0	Median	8061400000	3938400000	4123000000	1698100000	668110000	1030000000	2209300000	1189400000	1019800000	1867600000	894340000	973270000	2286400000	1186500000	1099900000	32824	1344	31039	203198;203199;203200;203201;203202;203203;203204;203205;203206;203207	274631;274632;274633;274634;274635;274636;274637;274638;274639;274640;274641;274642;274643	274640			13	
LNFFIHNLAQMK	1	Unmodified	1474.7755	0.77549014	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	79.667	74.544	3	9.0285E-17	39092	160513_QHF_FH_JSI11Kac_6	143.97	121.74			1.0331	1.0151	22.432	7	1	Median	1.4757	1.2293	30.679	2	0	Median	1.0037	1.1734	1.7664	2	1	Median	0.9815	0.94821	9.6471	2	0	Median	0.72835	0.76172	NaN	1	0	Median	535200000	251950000	283250000	140090000	45347000	94748000	212790000	108270000	104520000	145410000	80472000	64941000	36898000	17861000	19037000	32825	162	31040	203208;203209;203210;203211;203212;203213;203214	274644;274645;274646;274647;274648;274649	274645			5	
LNFGDDIPSALR	0	Unmodified	1316.6725	0.67246486	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.88	0.599	2	5	1							2		3	3	77.036	76.249	2	2.3179E-05	67026	160511_QHF_FH_JSI11i_2	88.596	55.756			1.0777	1.051	22.67	4	3	Median	1.2891	1.098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4879	1.5277	NaN	1	1	Median	0.87398	0.9534	7.6007	2	1	Median	594690000	316690000	278010000	196350000	126570000	69777000	0	0	0	184730000	69916000	114810000	213620000	120200000	93417000	32826	5434	31041	203215;203216;203217;203218;203219;203220;203221;203222	274650;274651;274652;274653;274654;274655;274656;274657;274658	274658			9	
LNFGLAR	0	Unmodified	789.44972	0.44972255	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.746	47.893	2	0.044869	39235	160511_QHF_FH_JSI9i_3	44.973	23.988			0.71295	0.70703	4.1462	4	0	Median	0.8667	0.72088	NaN	1	0	Median	0.6222	0.75666	NaN	1	0	Median	0.73306	0.69331	NaN	1	0	Median	0.69339	0.69344	NaN	1	0	Median	287860000	170860000	117000000	104450000	56241000	48214000	80491000	50834000	29656000	60563000	34819000	25743000	42353000	28970000	13383000	32827	2817	31042	203223;203224;203225;203226	274659;274660	274659			2	
LNFHPDQEDQFFSLVHEK	1	Unmodified	2229.0491	0.049082043	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	4	2	2	80.459	79.814	3;4	1.0935E-08	68923	160511_QHF_FH_JSI12i_3	127.17	114.69			1.0257	1.0617	19.771	9	2	Median	1.3084	1.139	NaN	1	0	Median	0.95733	1.1407	28.124	4	2	Median	1.0972	1.0173	6.0344	2	0	Median	0.97037	0.98093	6.8253	2	0	Median	926240000	427830000	498410000	24359000	10679000	13679000	95568000	43993000	51575000	466720000	201280000	265440000	339590000	171880000	167720000	32828	3955	31043	203227;203228;203229;203230;203231;203232;203233;203234;203235	274661;274662;274663;274664;274665;274666;274667;274668;274669;274670;274671;274672;274673;274674;274675	274674			15	
LNFSHGTHEYHAETIK	1	Unmodified	1882.8962	0.89621022	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	2.32			59						2	24	17	8	12	37.839	36.545	3;4;5	7.4322E-07	31387	160511_QHF_FH_JSI10i_3	110.96	99.695			0.99025	1.1585	72.818	56	15	Median	0.62786	0.51801	36.094	22	7	Median	1.1064	1.2477	12.111	16	3	Median	0.7171	0.68287	37.636	8	2	Median	2.7832	2.8017	44.686	10	3	Median	5213000000	2523500000	2689500000	1134600000	679600000	454990000	952130000	439050000	513080000	1504000000	1008300000	495710000	1622200000	396490000	1225800000	32829	1055	31044	203236;203237;203238;203239;203240;203241;203242;203243;203244;203245;203246;203247;203248;203249;203250;203251;203252;203253;203254;203255;203256;203257;203258;203259;203260;203261;203262;203263;203264;203265;203266;203267;203268;203269;203270;203271;203272;203273;203274;203275;203276;203277;203278;203279;203280;203281;203282;203283;203284;203285;203286;203287;203288;203289;203290;203291;203292;203293;203294;203295;203296	274676;274677;274678;274679;274680;274681;274682;274683;274684;274685;274686;274687;274688;274689;274690;274691;274692;274693;274694;274695;274696;274697;274698;274699;274700;274701;274702;274703;274704;274705;274706;274707;274708;274709;274710;274711;274712;274713;274714;274715;274716;274717;274718;274719;274720;274721;274722;274723;274724;274725;274726;274727;274728;274729;274730;274731;274732;274733;274734;274735;274736;274737;274738;274739;274740;274741;274742;274743;274744;274745;274746;274747;274748;274749	274698			65	
LNFSTPTSTNIVSVCR	0	Unmodified	1794.8934	0.89343302	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	70.805	70.237	2	3.1812E-07	60909	160511_QHF_FH_JSI12i_3	146.79	112.41			1.1045	1.2328	28.733	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0797	1.2683	9.8044	2	1	Median	0.71941	0.67754	NaN	1	0	Median	1.2572	1.2774	5.0257	2	2	Median	226560000	99116000	127440000	0	0	0	56509000	24543000	31966000	57915000	24572000	33343000	112140000	50002000	62134000	32830	241	31045	203297;203298;203299;203300;203301	274750;274751;274752;274753;274754;274755;274756	274755			7	
LNFTDEWSSIASSSR	0	Unmodified	1698.7849	0.78492843	2873	Q58WW2	DCAF6	DDB1- and CUL4-associated factor 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.509	82.3	2	0.0090241	71494	160511_QHF_FH_JSI12i_3	47.288	33.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32831	2873	31046	203302	274757	274757			1	
LNGFQLENFTLK	1	Unmodified	1422.7507	0.75071518	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	87.34	86.89	2	1.3891E-05	75115	160511_QHF_FH_JSI12i_2	127.42	99.215			1.0026	1.0541	25.407	6	2	Median	1.4216	1.2292	NaN	1	0	Median	0.93353	1.152	NaN	1	0	Median	1.082	1.0541	6.4337	2	0	Median	0.65498	0.70096	9.4926	2	2	Median	389560000	202120000	187430000	58540000	22940000	35599000	77656000	44551000	33105000	163320000	78914000	84403000	90044000	55717000	34327000	32832	132	31047	203303;203304;203305;203306;203307;203308	274758;274759;274760;274761;274762;274763	274759			6	
LNGGLGTSMGCK	1	Unmodified	1193.5533	0.5532777	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.208	29.828	2	0.021352	25234	160511_QHF_FH_JSI11i_2	49.35	36.724			0.3793	0.37112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3793	0.37112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49590000	38856000	10734000	0	0	0	0	0	0	49590000	38856000	10734000	0	0	0	32833	2772	31048	203309	274764	274764			1	
LNGHQLENHALK	1	Unmodified	1372.7211	0.72114638	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	19.235	19.243	2;3;4	0.0085953	15957	160511_QHF_FH_JSI11i_3	46.069	31.716			0.78038	0.79353	66.048	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7344	1.6581	71.444	2	1	Median	0.78038	0.79353	NaN	1	0	Median	297870000	158890000	138980000	0	0	0	0	0	0	109220000	44736000	64489000	188650000	114160000	74491000	32834	5153	31049	203310;203311;203312;203313	274765;274766;274767	274765			3	
LNGHVVVK	1	Unmodified	864.51814	0.51813647	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	12.061	12.106	2	0.022546	9285	160511_QHF_FH_JSI12i_3	43.858	25.053			0.99226	0.96109	2.0344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0373	0.97502	NaN	1	0	Median	0.94921	0.94736	NaN	1	0	Median	179010000	101980000	77031000	0	0	0	0	0	0	74556000	44639000	29917000	104460000	57342000	47114000	32835	2508	31050	203314;203315	274768	274768			1	
LNGLENRVEVGK	1	Unmodified	1326.7256	0.72556306	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		34.077	33.313	3	0.0053136	28899	160511_QHF_FH_JSI11i_3	45.257	20.966			0.89137	0.90855	4.863	5	0	Median	1.0762	0.90855	NaN	1	0	Median	0.75955	0.91018	1.2112	2	0	Median	0.92837	0.90074	9.589	2	0	Median	NaN	NaN	NaN	0	0	Median	484450000	248800000	235650000	61288000	30614000	30674000	133190000	77173000	56015000	289980000	141010000	148960000	0	0	0	32836	512	31051	203316;203317;203318;203319;203320	274769;274770;274771	274769			3	
LNGLSSDSTIDILYQLGTTQDPGTKDR	1	Unmodified	2907.4462	0.4461599	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				43.986	42.769	4	0.047179	37843	160511_QHF_FH_JSI9i_1	17.716	15.037			5.4527	4.4304	NaN	1	1	Median	5.4527	4.4304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	631460000	61304000	570150000	631460000	61304000	570150000	0	0	0	0	0	0	0	0	0	32837	4936	31052	203321	274772	274772			1	
LNGPQDHSHLLYSTIPR	0	Unmodified	1946.9963	0.99625861	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	48.963	48.844	4	0.021204	43345	160511_QHF_FH_JSI11i_3	34.094	23.755			0.86607	0.8443	5.5965	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93837	0.87839	NaN	1	0	Median	0.79935	0.81154	NaN	1	0	Median	129760000	75922000	53839000	0	0	0	0	0	0	66641000	38985000	27656000	63120000	36937000	26183000	32838	442	31053	203322;203323	274773	274773			0	
LNGQVLVFTLPLTDQVSVIK	1	Unmodified	2183.2566	0.25655562	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		3							6	3	1	3	2	98.241	92.412	2;3	6.0115E-55	49519	160513_QHF_FH_JSI11Kac_6	240.04	173.55			1.1647	1.2287	18.595	9	4	Median	1.5408	1.3071	2.3896	3	2	Plateau	1.0651	1.2287	NaN	1	0	Median	1.1105	1.0685	9.3251	3	2	Plateau	0.77103	0.82195	0.4794	2	0	Median	1343100000	578540000	764590000	248730000	86769000	161960000	109570000	62924000	46645000	675980000	265900000	410080000	308860000	162950000	145910000	32839	2676	31054	203324;203325;203326;203327;203328;203329;203330;203331;203332	274774;274775;274776;274777;274778;274779;274780;274781;274782	274777			9	
LNGTDPEDVIR	0	Unmodified	1227.6095	0.60953025	223;1151	O14950;P24844;P19105	MYL12B;MYL9;MYL12A	Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	47.963	43.579	2	9.6964E-09	39123	160511_QHF_FH_JSI10i_1	146.11	129.57			0.97547	1.0004	5.9152	7	0	Median	1.2225	0.99672	NaN	1	0	Median	0.91901	1.0818	9.0161	2	0	Median	1.0207	0.99199	1.2011	2	0	Median	0.92332	0.98122	3.0536	2	0	Median	3579000000	1799500000	1779500000	680040000	265580000	414460000	920870000	508600000	412260000	1031500000	524430000	507070000	946570000	500850000	445720000	32840	223;1151	31055	203333;203334;203335;203336;203337;203338;203339	274783;274784;274785;274786;274787;274788;274789;274790;274791;274792	274787			10	
LNGTLREDDNR	0	Unmodified	1301.6324	0.63239096	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.042	11.35	2	0.0019978	8897	160511_QHF_FH_JSI10i_3	76.827	16.39			0.82673	0.95336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82673	0.95336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38406000	21709000	16697000	0	0	0	38406000	21709000	16697000	0	0	0	0	0	0	32841	2689	31056	203340	274793	274793			1	
LNHFFEGVEAR	0	Unmodified	1317.6466	0.64658446	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.423	42.423	2	0.0045529	37387	160511_QHF_FH_JSI11i_3	64.297	46.433			0.85565	0.8144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85565	0.8144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25995000	15710000	10286000	0	0	0	0	0	0	25995000	15710000	10286000	0	0	0	32842	5024	31057	203341;203342	274794;274795	274794			2	
LNHLCGADFVK	1	Unmodified	1272.6285	0.62849155	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		38.554	38.554	2	0.0025022	33860	160511_QHF_FH_JSI11i_3	60.398	38.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32843	690	31058	203343	274796	274796			1	
LNHLSFAELLK	1	Unmodified	1283.7238	0.72377215	5524	Q9Y2L5	TRAPPC8	Trafficking protein particle complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.876	74.087	3	1.6831E-05	64049	160511_QHF_FH_JSI12i_3	91.961	82.306			1.1411	1.0075	9.4839	4	0	Linear	1.4262	1.1887	NaN	1	0	Median	1.0155	1.1868	NaN	1	0	Median	1.2822	1.1801	NaN	1	0	Median	0.96785	0.98055	NaN	1	0	Median	110770000	50998000	59776000	12779000	6189600	6589200	14913000	7166800	7746000	31816000	11202000	20614000	51266000	26440000	24826000	32844	5524	31059	203344;203345;203346;203347	274797;274798;274799;274800;274801;274802;274803	274803			7	
LNHNAAFMQIPMGLEGNFK	1	Oxidation (M)	2147.0292	0.029214998	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									2	3	76.34	76.174	3	0.00025705	66874	160511_QHF_FH_JSI12i_3	63.337	54.736			0.948	0.98219	23.347	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0192	0.94456	24.351	2	2	Median	0.948	0.98219	27.162	3	3	Median	221440000	106850000	114590000	0	0	0	0	0	0	82458000	36873000	45585000	138980000	69977000	69000000	32845	4221	31060	203348;203349;203350;203351;203352	274804;274805;274806;274807;274808;274809	274809		2414;2415	6	
LNHNAAFMQIPMGLEGNFK	1	Unmodified	2131.0343	0.034300376	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	3	2	86.375	85.799	3	1.8831E-06	74546	160511_QHF_FH_JSI12i_3	98.572	81.888			0.92113	0.95562	9.0092	10	5	Median	1.0716	0.92554	6.6924	2	0	Median	0.82243	1.014	7.009	3	2	Median	0.91741	0.87777	10.865	3	2	Plateau	0.87462	0.93189	14.004	2	1	Median	913440000	463280000	450170000	64607000	34736000	29870000	166990000	83590000	83402000	416570000	220780000	195790000	265270000	124170000	141100000	32846	4221	31060	203353;203354;203355;203356;203357;203358;203359;203360;203361;203362	274810;274811;274812;274813;274814;274815;274816;274817;274818;274819;274820;274821	274821			12	
LNHQEFK	1	Unmodified	914.46102	0.46101552	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	9.14	8.7142	2;3	0.0075612	6428	160511_QHF_FH_JSI12i_2	51.43	32.699			1.2795	1.3814	79.718	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76112	0.78616	NaN	1	0	Median	2.1509	2.4273	NaN	1	1	Median	149090000	48449000	100650000	0	0	0	0	0	0	34945000	22420000	12525000	114150000	26029000	88121000	32847	2470	31061	203363;203364	274822;274823	274822			2	
LNHVAAGLVSPSLK	1	Unmodified	1404.8089	0.80889876	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	4	3	3	3	50.043	46.563	2;3	1.232E-09	39667	160511_QHF_FH_JSI12i_3	172.11	145			1.0703	0.9962	35.693	13	0	Median	1.6417	1.3191	21.291	4	0	Linear	1.0936	1.2375	33.477	3	0	Median	1.151	1.066	57.139	3	0	Plateau	0.97532	0.9962	36.554	3	0	Plateau	3280200000	1684300000	1595900000	421130000	197660000	223470000	486780000	256910000	229870000	970140000	495560000	474570000	1402100000	734160000	667970000	32848	2230	31062	203365;203366;203367;203368;203369;203370;203371;203372;203373;203374;203375;203376;203377	274824;274825;274826;274827;274828;274829;274830;274831;274832;274833;274834;274835;274836;274837;274838;274839;274840;274841;274842;274843;274844	274837			19	
LNHVAIAVPDLEK	1	Unmodified	1417.7929	0.79291434	4196	Q96PE7	MCEE	Methylmalonyl-CoA epimerase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.205	60.205	3	0.015962	53383	160511_QHF_FH_JSI11i_3	40.477	27.917			1.7933	1.712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7933	1.712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36473000	12971000	23502000	0	0	0	0	0	0	36473000	12971000	23502000	0	0	0	32849	4196	31063	203378	274845	274845			1	
LNHVGDWGTQFGMLIAHLQDK	1	Unmodified	2379.1794	0.17938471	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	4	2	93.991	88.423	3;4	2.4146E-49	45737	160513_QHF_FH_JSI11Kac_6	189.09	167.69			1.0092	0.99965	19.908	12	1	Median	1.3525	1.1533	36.23	3	1	Median	0.84957	0.99815	5.5999	3	0	Plateau	1.0296	0.98269	8.9362	4	0	Median	0.87014	0.91751	16.995	2	0	Median	5166700000	2595200000	2571500000	652030000	299800000	352230000	1456900000	808080000	648820000	2380900000	1173400000	1207500000	676840000	313900000	362940000	32850	1818	31064	203379;203380;203381;203382;203383;203384;203385;203386;203387;203388;203389;203390	274846;274847;274848;274849;274850;274851;274852;274853;274854;274855;274856;274857;274858;274859;274860	274850			15	
LNHVGDWGTQFGMLIAHLQDK	1	Oxidation (M)	2395.1743	0.17429933	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.824	80.89	4	1.8104E-11	43122	160513_QHF_FH_JSI12Kac_6	102.48	97.827			0.87832	1.0054	8.6653	3	0	Median	1.2121	1.037	NaN	1	0	Median	0.87832	1.0054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83247	0.88089	NaN	1	0	Median	283910000	153630000	130280000	89103000	39525000	49578000	113940000	69975000	43966000	0	0	0	80866000	44126000	36740000	32851	1818	31064	203391;203392;203393	274861;274862;274863;274864	274863		1503	4	
LNHYLEDKPSPPPVK	2	Unmodified	1732.9148	0.91482039	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	34.822	34.694	3	0.0044813	29350	160511_QHF_FH_JSI12i_3	53.995	37.31			0.60344	0.59857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60344	0.59857	NaN	1	1	Median	32974000	20524000	12450000	0	0	0	0	0	0	0	0	0	32974000	20524000	12450000	32852	3469	31065	203394	274865	274865			1	
LNHYVLYK	1	Unmodified	1048.5706	0.57056597	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.4		2	5						4	1	3	4	3	31.896	28.344	2;3	0.0034173	23572	160511_QHF_FH_JSI10i_3	51.346	39.132			0.87103	0.96574	27.219	11	2	Median	0.80062	0.68839	NaN	1	0	Median	0.87103	1.0293	32.396	3	0	Median	0.93645	0.89866	30.775	4	1	Median	0.9885	1.0246	12.215	3	1	Median	649090000	336170000	312920000	4441000	2019700	2421400	135530000	74356000	61175000	233380000	110110000	123270000	275740000	149690000	126050000	32853	313	31066	203395;203396;203397;203398;203399;203400;203401;203402;203403;203404;203405	274866;274867;274868;274869;274870;274871;274872;274873;274874;274875	274867			10	
LNIDSIIQR	0	Unmodified	1070.6084	0.60840804	1461	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	2	3	62.01	61.275	2;3	3.5315E-05	60607	160511_QHF_FH_JSI11i_3	100.02	67.547			0.8178	0.75073	33.023	7	3	Median	0.67437	0.57357	64.782	2	1	Median	0.59467	0.72798	NaN	1	0	Median	0.73544	0.70188	9.5145	2	1	Median	0.86786	0.91829	4.9189	2	1	Median	1166400000	642050000	524370000	114980000	66699000	48281000	129010000	72989000	56024000	454590000	244180000	210410000	467830000	258180000	209650000	32854	1461	31067	203406;203407;203408;203409;203410;203411;203412;203413	274876;274877;274878;274879;274880;274881	274876			6	
LNIGDLQVTK	1	Unmodified	1099.6237	0.62372375	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.62	2	3					2			1	2	3	1	67.661	64.116	2	6.4989E-05	58534	160511_QHF_FH_JSI11i_1	90.15	53.594			0.91983	0.97587	9.1768	7	0	Median	1.1682	0.97587	NaN	1	0	Median	0.82026	0.9793	6.2514	2	0	Median	0.88509	0.87972	15.184	3	0	Plateau	0.95183	0.99231	NaN	1	0	Median	961440000	476990000	484450000	224830000	102160000	122670000	165210000	95151000	70061000	423190000	205370000	217820000	148210000	74308000	73900000	32855	5441	31068	203414;203415;203416;203417;203418;203419;203420	274882;274883;274884;274885;274886;274887;274888;274889;274890	274882			9	
LNIHSIIK	1	Unmodified	936.57565	0.57565135	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	47.592	46.615	2;3	0.00096096	39528	160511_QHF_FH_JSI12i_3	69.812	45.657			0.95014	0.95507	8.0691	7	0	Median	1.2875	1.0374	12.326	2	0	Median	0.91914	1.041	2.287	2	0	Median	1.0052	0.94794	NaN	1	0	Median	0.91511	0.9232	4.8001	2	0	Median	320800000	160100000	160700000	74744000	31412000	43332000	62777000	33805000	28972000	59878000	30676000	29201000	123400000	64209000	59193000	32856	3169	31069	203421;203422;203423;203424;203425;203426;203427	274891;274892;274893;274894;274895;274896;274897;274898;274899	274899			9	
LNIIIVAEGAIDK	1	Unmodified	1367.8024	0.8024164	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.08	99.903	2	9.3334E-05	87455	160511_QHF_FH_JSI11i_2	95.477	69.539			0.54455	0.56345	24.115	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6703	0.66821	NaN	1	0	Median	0.4424	0.47512	NaN	1	0	Median	53756000	29420000	24336000	0	0	0	0	0	0	30792000	14771000	16021000	22964000	14649000	8315400	32857	897	31070	203428;203429	274900;274901;274902	274902			3	
LNILDTLSK	1	Unmodified	1015.5914	0.59136099	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.37	1	4	2					2		1	2	4	2	76.051	73.271	2	7.0493E-05	65461	160511_QHF_FH_JSI9i_2	96.331	59.936			0.94186	0.97106	20.274	9	2	Median	0.9799	0.81932	NaN	1	0	Median	0.68712	0.83952	6.9294	2	0	Median	0.96815	0.97158	16.407	4	1	Median	1.15	1.2192	25.78	2	1	Median	1374400000	712310000	662100000	228780000	97261000	131520000	308270000	188190000	120080000	528700000	281270000	247430000	308660000	145590000	163070000	32858	2370	31071	203430;203431;203432;203433;203434;203435;203436;203437;203438	274903;274904;274905;274906;274907;274908;274909;274910;274911;274912;274913	274906			11	
LNILKLAPGGHVGR	1	Acetyl (K)	1485.878	0.87798138	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	77.328	68.991	3	0.00015309	37425	160513_QHF_FH_JSI11Kac_6	84.297	48.56			0.89709	0.98427	96.759	3	1	Median	NaN	NaN	NaN	0	0	Median	1.7544	2.0667	NaN	1	0	Median	0.30988	0.30336	NaN	1	0	Median	0.89709	0.98427	NaN	1	1	Median	151030000	104180000	46849000	0	0	0	48038000	22508000	25530000	88321000	70629000	17693000	14668000	11041000	3627000	32859	1457	31072	203439;203440;203441	274914;274915;274916	274914	1439		3	
LNIMAAK	1	Unmodified	759.4313	0.43129529	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	35.237	34.599	2	0.017137	29422	160511_QHF_FH_JSI12i_2	55.441	30.443			1.0488	1.0891	16.434	4	0	Median	1.2663	1.1134	NaN	1	0	Median	0.86029	1.0654	NaN	1	0	Median	0.86858	0.87783	NaN	1	0	Median	1.3102	1.3089	NaN	1	0	Median	715550000	341560000	373990000	126950000	58402000	68552000	179620000	86231000	93389000	250910000	131900000	119010000	158060000	65020000	93037000	32860	1421	31073	203442;203443;203444;203445;203446	274917;274918;274919;274920	274917			4	
LNINPEDGMADYSDPSYVK	1	Unmodified	2126.9467	0.94665039	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	71.8	71.276	2;3	8.6162E-54	63305	160511_QHF_FH_JSI9i_1	216.68	201.65			0.99865	0.9284	7.7091	4	0	Median	1.0533	0.86517	NaN	1	0	Median	0.75095	0.87182	NaN	1	0	Median	1.0329	0.98864	NaN	1	0	Median	0.96552	0.99605	NaN	1	0	Median	238820000	117490000	121330000	54441000	24253000	30188000	70701000	39010000	31691000	61985000	29172000	32813000	51692000	25052000	26640000	32861	4271	31074	203447;203448;203449;203450;203451	274921;274922;274923;274924;274925;274926;274927;274928;274929;274930;274931;274932	274931			12	
LNIPATNVFANR	0	Unmodified	1328.7201	0.72008375	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							2	2		1	71.019	70.044	2	2.6657E-05	58604	160511_QHF_FH_JSI10i_3	108.67	59.871			0.84385	0.90383	11.604	5	1	Median	1.1928	1.0157	16.501	2	0	Median	0.76352	0.89495	8.6583	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84385	0.89568	NaN	1	0	Median	413970000	213740000	200230000	177970000	72037000	105940000	165500000	99979000	65525000	0	0	0	70489000	41725000	28763000	32862	2083	31075	203452;203453;203454;203455;203456	274933;274934;274935;274936;274937;274938;274939	274934			7	
LNIPVSQVNPR	0	Unmodified	1235.6986	0.69862003	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.88	4	4	4				1	4		4	4	4	5	56.547	52.805	2	1.5619E-05	44093	160511_QHF_FH_JSI10i_3	105.4	65.395			0.91727	0.93256	16.413	17	0	Median	1.1806	1.0065	13.081	4	0	Median	0.79174	0.93708	11.054	4	0	Median	0.94321	0.92387	13.839	4	0	Median	0.81736	0.92088	25.171	5	0	Median	3572300000	1783000000	1789400000	645670000	270650000	375030000	867840000	482010000	385840000	1168100000	584670000	583460000	890690000	445640000	445050000	32863	821;1032	31076	203457;203458;203459;203460;203461;203462;203463;203464;203465;203466;203467;203468;203469;203470;203471;203472;203473	274940;274941;274942;274943;274944;274945;274946;274947;274948;274949;274950;274951;274952;274953;274954;274955;274956;274957;274958;274959;274960;274961;274962;274963	274946			24	
LNIPWNHIR	0	Unmodified	1161.6407	0.64071122	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.106	58.577	3	0.026419	48949	160511_QHF_FH_JSI10i_3	28.727	21.839			0.75072	0.86022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75072	0.86022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11393000	7634000	3759200	0	0	0	11393000	7634000	3759200	0	0	0	0	0	0	32864	4959	31077	203474	274964	274964			1	
LNISFPATGCQK	1	Unmodified	1334.6653	0.66527099	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.61	5	3	4				1	3		5	1	5	5	64.101	60.445	2	1.5855E-07	53859	160511_QHF_FH_JSI11i_3	155.15	140			0.98785	0.96588	30.756	14	4	Median	0.97844	0.79205	30.605	5	3	Median	0.89041	1.0413	NaN	1	0	Median	0.8184	0.8262	10.643	4	0	Median	1.2456	1.3396	9.7979	4	1	Median	3361500000	1531200000	1830400000	428540000	202310000	226230000	387460000	189620000	197830000	1130900000	555210000	575650000	1414700000	584030000	830640000	32865	2018	31078	203475;203476;203477;203478;203479;203480;203481;203482;203483;203484;203485;203486;203487;203488;203489;203490	274965;274966;274967;274968;274969;274970;274971;274972;274973;274974;274975;274976;274977;274978;274979;274980;274981;274982;274983;274984;274985	274967			21	
LNITSLQFK	1	Unmodified	1062.6073	0.6073454	2810	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	70.909	70.141	2	0.0011621	60782	160511_QHF_FH_JSI12i_3	70.256	34.818			0.85335	0.85143	17.246	5	0	Median	1.4238	1.2081	NaN	1	0	Median	0.6913	0.85143	NaN	1	0	Median	0.85335	0.85113	NaN	1	0	Median	0.85441	0.90391	18.285	2	0	Median	209230000	117800000	91426000	23378000	7788300	15590000	31196000	20964000	10232000	31599000	18494000	13105000	123050000	70554000	52499000	32866	2810	31079	203491;203492;203493;203494;203495	274986;274987;274988;274989;274990	274990			5	
LNITYPMLFK	1	Unmodified	1238.6733	0.67331648	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	1	2	92.469	91.97	2	0.00057794	76737	160511_QHF_FH_JSI10i_3	86.67	66.884			0.88401	1.0237	29.327	7	2	Median	0.67732	0.59483	NaN	1	0	Median	0.88401	1.0237	36.17	3	2	Median	1.1574	1.1042	NaN	1	0	Median	0.87933	0.93899	18.751	2	0	Median	219820000	118650000	101160000	30443000	17651000	12792000	71908000	45087000	26821000	41986000	17968000	24018000	75482000	37949000	37533000	32867	3902	31080	203496;203497;203498;203499;203500;203501;203502	274991;274992;274993;274994;274995	274993			5	
LNIWDVGGQK	1	Unmodified	1128.5928	0.59275797	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.035	65.134	2	4.6404E-05	55967	160511_QHF_FH_JSI12i_2	93.649	77.987			1.1386	1.0839	15.677	4	0	Median	1.0971	0.93567	NaN	1	0	Median	0.82184	0.99256	NaN	1	0	Median	1.1817	1.1837	NaN	1	0	Median	1.1884	1.3142	NaN	1	0	Median	339840000	173150000	166690000	60053000	29078000	30974000	73569000	41162000	32407000	105590000	54197000	51389000	100640000	48712000	51924000	32868	1450	31081	203503;203504;203505;203506	274996;274997;274998;274999;275000;275001	274996			6	
LNKAVWAK	2	Acetyl (K)	970.56	0.56000128	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	53.128	42.556	2	0.029605	23576	160513_QHF_FH_JSI11Kac_5	57.177	33.205			0.76857	0.84303	33.091	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86137	1.0224	NaN	1	0	Median	0.50021	0.47754	NaN	1	0	Median	0.76857	0.84303	5.9139	2	0	Median	17993000	11187000	6806400	0	0	0	4654400	2639300	2015100	6508800	4468400	2040400	6830200	4079400	2750900	32869	2035	31082	203507;203508;203509;203510	275002	275002	2076		1	
LNKHEENLK	2	Acetyl (K)	1165.6091	0.60913632	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5			2	3	1	22.427	13.432	2;3	1.0445E-05	9279	160513_QHF_FH_JSI11Kac_5	123.86	101.78			0.30181	0.31187	166.53	6	1	Median	NaN	NaN	NaN	0	0	Median	1.2972	1.5446	14.97	2	0	Median	0.25067	0.24589	155.26	3	1	Plateau	0.36339	0.3944	NaN	1	0	Median	217920000	161460000	56465000	0	0	0	35388000	15959000	19429000	153730000	123370000	30368000	28801000	22132000	6668200	32870	1546	31083	203511;203512;203513;203514;203515;203516	275003;275004;275005;275006;275007;275008;275009;275010	275005	1563		8	
LNKPFLFDTK	2	Unmodified	1221.6758	0.67575932	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	4	4	4	3	55.856	52.771	2;3	5.5514E-10	45054	160511_QHF_FH_JSI12i_3	142.83	116.44			1.0212	0.99417	20.383	15	2	Median	1.0627	0.92455	19.124	4	0	Median	0.83033	0.96149	12.602	4	1	Median	1.1023	1.0363	29.102	4	1	Median	1.1732	1.1759	14.226	3	0	Median	21816000000	9101800000	12714000000	5841700000	2322000000	3519600000	4259500000	1845900000	2413500000	4886100000	2072500000	2813600000	6828400000	2861400000	3967100000	32871	1299	31084	203517;203518;203519;203520;203521;203522;203523;203524;203525;203526;203527;203528;203529;203530;203531	275011;275012;275013;275014;275015;275016;275017;275018;275019;275020;275021;275022;275023;275024;275025;275026;275027;275028;275029;275030;275031;275032;275033;275034;275035;275036;275037;275038;275039;275040;275041;275042;275043	275040			33	
LNKPFLFDTK	2	Acetyl (K)	1263.6863	0.68632401	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	81.348	70.888	2	5.0762E-06	37513	160513_QHF_FH_JSI11Kac_5	118.4	94.373			0.44872	0.44161	277.97	3	1	Plateau	NaN	NaN	NaN	0	0	Median	58.356	69.011	NaN	1	1	Median	0.44872	0.44161	NaN	1	0	Median	0.67954	0.73944	NaN	1	0	Median	234400000	150360000	84043000	0	0	0	14280000	318000	13962000	199850000	135940000	63910000	20277000	14106000	6171400	32872	1299	31084	203532;203533;203534	275044;275045;275046;275047	275045	1235		4	
LNKSELK	2	Acetyl (K)	872.49673	0.49673232	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		35.035	25.741	2	0.052691	15842	160513_QHF_FH_JSI11Kac_4	59.35	7.4954			0.43094	0.42704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43094	0.42704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93282000	67825000	25457000	0	0	0	0	0	0	93282000	67825000	25457000	0	0	0	32873	1278	31085	203535	275048	275048	1190		1	
LNLAFVANLFNK	1	Unmodified	1362.766	0.76597131	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	3	4	98.854	94.327	2;3	1.2526E-49	49321	160513_QHF_FH_JSI11Kac_6	254.82	250.36			0.79285	0.91051	18.607	15	0	Median	1.2915	0.94255	19.063	4	0	Linear	0.76012	0.87709	5.0945	4	0	Median	0.69603	0.67225	25.24	3	0	Plateau	0.67719	0.69802	18.513	4	0	Median	23059000000	11463000000	11596000000	5269200000	2427100000	2842100000	6933200000	3514600000	3418500000	4356200000	2128500000	2227700000	6500800000	3393000000	3107700000	32874	1039	31086	203536;203537;203538;203539;203540;203541;203542;203543;203544;203545;203546;203547;203548;203549;203550	275049;275050;275051;275052;275053;275054;275055;275056;275057;275058;275059;275060;275061;275062;275063;275064;275065;275066;275067;275068;275069;275070;275071;275072;275073;275074;275075;275076	275054			28	
LNLAQFLNEDLS	0	Unmodified	1375.6983	0.69834526	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			102.15	102.13	2	0.00012899	92877	160511_QHF_FH_JSI10i_1	101.65	91.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32875	4337	31087	203551	275077	275077			1	
LNLDKMMEQK	2	Acetyl (K)	1290.6312	0.63119367	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	74.103	63.498	2	0.002593	34122	160513_QHF_FH_JSI12Kac_4	78.655	65.147			1.0606	1.154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0606	1.154	NaN	1	0	Median	21449000	12178000	9271300	0	0	0	0	0	0	0	0	0	21449000	12178000	9271300	32876	935	31088	203552	275078;275079	275079	691		2	
LNLDSIIGR	0	Unmodified	999.57129	0.57129425	1980	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	75.059	74.233	2	0.00014996	65608	160511_QHF_FH_JSI9i_2	89.355	54.547			1.0184	1.0188	21.976	8	1	Median	1.4018	1.1665	20.132	2	1	Median	0.86683	1.0232	13.609	2	0	Median	0.89857	0.8872	20.542	2	0	Median	0.82822	0.87067	35.301	2	0	Median	1803500000	902470000	901010000	180350000	79773000	100580000	299370000	158150000	141220000	642270000	332300000	309970000	681490000	332250000	349240000	32877	1980	31089	203553;203554;203555;203556;203557;203558;203559;203560	275080;275081;275082;275083;275084;275085;275086;275087;275088;275089;275090;275091;275092;275093;275094	275088			15	
LNLEAINYMAADGDFK	1	Unmodified	1783.8451	0.84508585	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	15	10	5							4	9	10	7	92.54	92.12	2;3	2.6027E-52	81140	160511_QHF_FH_JSI9i_2	222.56	191.33			0.90497	0.91445	30.473	23	10	Median	1.1111	0.93276	16.452	4	1	Median	0.66616	0.79362	34.994	6	2	Median	0.93365	0.92148	38.159	8	5	Median	0.81873	0.89184	6.6919	5	2	Median	3447000000	1754500000	1692500000	551570000	279200000	272370000	1044000000	548050000	495990000	1183200000	579630000	603580000	668170000	347600000	320570000	32878	926	31090	203561;203562;203563;203564;203565;203566;203567;203568;203569;203570;203571;203572;203573;203574;203575;203576;203577;203578;203579;203580;203581;203582;203583;203584;203585;203586;203587;203588;203589;203590	275095;275096;275097;275098;275099;275100;275101;275102;275103;275104;275105;275106;275107;275108;275109;275110;275111;275112;275113;275114;275115;275116;275117;275118;275119;275120;275121;275122;275123;275124;275125;275126;275127;275128;275129;275130;275131;275132;275133;275134;275135;275136;275137;275138;275139;275140;275141;275142;275143;275144;275145;275146;275147;275148;275149;275150;275151;275152;275153;275154;275155;275156;275157;275158;275159;275160;275161;275162;275163;275164	275138			70	
LNLEAINYMAADGDFK	1	Oxidation (M)	1799.84	0.84000047	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	3	3	2	78.905	78.312	2;3	1.6202E-07	71009	160511_QHF_FH_JSI10i_1	139.3	121.16			0.87126	1.1265	13.721	6	3	Linear	1.3776	1.1581	NaN	1	1	Median	0.84085	1.0188	NaN	1	0	Median	1.21	1.1985	19.503	2	1	Median	1.1449	1.2371	17.17	2	1	Median	228540000	114970000	113570000	23102000	12099000	11003000	66652000	36535000	30117000	80054000	37837000	42217000	58732000	28497000	30236000	32879	926	31090	203591;203592;203593;203594;203595;203596;203597;203598;203599	275165;275166;275167;275168;275169;275170;275171;275172;275173;275174;275175;275176	275170		503	12	
LNLEHIATSSAVSK	1	Unmodified	1468.7886	0.78855725	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.48	6.57		9	9					5	10	8	8	10	7	52.399	48.06	2;3	1.3162E-06	42489	160511_QHF_FH_JSI11i_3	158.58	133.19			0.91048	0.93879	19.862	28	7	Median	1.0355	0.88736	23.268	7	1	Median	0.76136	0.90431	21.527	8	3	Median	1.0457	1.0056	19.696	7	1	Median	0.87919	0.96827	16.63	6	2	Median	6944300000	3352000000	3592200000	808630000	384360000	424260000	1128000000	586080000	541960000	2225000000	1164200000	1060800000	2782600000	1217300000	1565200000	32880	4212	31091	203600;203601;203602;203603;203604;203605;203606;203607;203608;203609;203610;203611;203612;203613;203614;203615;203616;203617;203618;203619;203620;203621;203622;203623;203624;203625;203626;203627;203628;203629;203630;203631;203632	275177;275178;275179;275180;275181;275182;275183;275184;275185;275186;275187;275188;275189;275190;275191;275192;275193;275194;275195;275196;275197;275198;275199;275200;275201;275202;275203;275204;275205;275206;275207;275208;275209;275210;275211;275212;275213;275214;275215;275216;275217;275218;275219;275220;275221;275222;275223;275224;275225;275226;275227;275228;275229;275230	275179			54	
LNLGGDFIK	1	Unmodified	975.53893	0.53893149	4402	Q9BSR8	YIPF4	Protein YIPF4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.544	64.643	2	0.00067613	56361	160511_QHF_FH_JSI11i_2	76.221	55.667			1.0966	1.1348	20.046	4	1	Median	1.3583	1.1692	NaN	1	0	Median	1.0856	1.332	NaN	1	0	Median	1.1077	1.1013	NaN	1	0	Median	0.72289	0.82837	NaN	1	1	Median	238940000	118620000	120320000	38469000	15057000	23412000	45516000	22844000	22672000	100370000	47389000	52985000	54580000	33328000	21252000	32881	4402	31092	203633;203634;203635;203636	275231;275232;275233	275233			3	
LNLGGSSR	0	Unmodified	802.42972	0.42971539	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	16.906	16.375	2	0.048721	13109	160511_QHF_FH_JSI9i_3	37.558	14.035			1.1556	1.0362	32.043	2	0	Median	1.6099	1.2997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82952	0.82614	NaN	1	0	Median	125350000	61307000	64045000	47933000	18769000	29163000	0	0	0	0	0	0	77420000	42538000	34882000	32882	417	31093	203637;203638	275234	275234			1	
LNLGTDSDSSPQK	1	Unmodified	1360.647	0.64703797	2731	Q16512	PKN1	Serine/threonine-protein kinase N1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		27.915	27.71	2	0.0023863	24608	160511_QHF_FH_JSI11i_1	58.37	47.219			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32883	2731	31094	203639;203640	275235;275236	275236			2	
LNLGTVGFYR	0	Unmodified	1138.6135	0.61349341	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	69.644	68.994	2	1.8238E-05	59759	160511_QHF_FH_JSI12i_3	110.41	88.88			0.89378	0.92137	6.248	5	3	Median	1.2204	0.99484	NaN	1	0	Median	0.78488	0.92137	NaN	1	0	Median	0.9496	0.91196	8.1737	2	2	Median	0.8497	0.87356	NaN	1	1	Median	1291200000	624620000	666590000	283190000	85543000	197650000	202280000	122250000	80022000	483990000	241600000	242390000	321750000	175220000	146520000	32884	1862	31095	203641;203642;203643;203644;203645	275237;275238;275239;275240;275241;275242	275242			6	
LNLHYAVVSK	1	Unmodified	1142.6448	0.64479354	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.39	6.51		1	8					1	8	6	3	4	5	47.479	42.557	2;3	1.4983E-06	22554	160513_QHF_FH_JSI9Kac_6	98.353	72.968			1.0564	0.97802	18.105	17	2	Median	1.3386	1.1065	10.352	5	0	Median	0.85158	0.956	5.1685	3	0	Median	1.0623	1.0055	6.3848	4	0	Median	0.80589	0.82777	27.897	5	2	Median	4317800000	2146200000	2171600000	909050000	405690000	503360000	682800000	342410000	340390000	1036300000	468660000	567670000	1689700000	929440000	760220000	32885	1609	31096	203646;203647;203648;203649;203650;203651;203652;203653;203654;203655;203656;203657;203658;203659;203660;203661;203662;203663	275243;275244;275245;275246;275247;275248;275249;275250;275251;275252;275253;275254;275255;275256;275257;275258;275259;275260;275261;275262;275263;275264;275265;275266;275267;275268;275269;275270;275271;275272;275273;275274;275275;275276;275277;275278	275266			35	
LNLLHEFLQTEIK	1	Unmodified	1596.8875	0.88754301	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	4	1	2	94.906	94.415	2;3	1.9112E-07	81095	160511_QHF_FH_JSI12i_3	130.24	102.83			0.93574	0.99352	33.131	8	3	Median	1.2815	1.1152	5.652	2	1	Median	0.93574	1.0846	35.28	4	2	Median	0.66707	0.63224	NaN	1	0	Median	0.59422	0.61272	NaN	1	0	Median	200900000	110480000	90421000	11466000	3922200	7543500	34741000	18494000	16248000	41706000	27656000	14050000	112990000	60405000	52580000	32886	1273	31097	203664;203665;203666;203667;203668;203669;203670;203671;203672	275279;275280;275281;275282;275283;275284;275285;275286;275287;275288;275289;275290;275291;275292;275293	275290			15	
LNLLTVIQLLNEVLK	1	Unmodified	1722.0655	0.065507375	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			105.2	98.607	2;3	1.3795E-67	58895	160513_QHF_FH_JSI10Kac_6	205.72	166.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32887	3271	31098	203673;203674;203675;203676	275294;275295;275296;275297	275295			4	
LNLMYIDSIDLEK	1	Unmodified	1565.8011	0.80109577	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.656	97.466	2	1.6493E-05	83892	160511_QHF_FH_JSI12i_2	122.51	101.14			0.80105	0.79895	18.97	4	1	Median	0.80862	0.69777	NaN	1	0	Median	0.68891	0.81225	NaN	1	1	Median	0.79354	0.78587	NaN	1	0	Median	0.96807	1.0905	NaN	1	0	Median	100340000	52622000	47716000	19700000	9792500	9907300	17698000	11484000	6213200	32917000	18778000	14139000	30023000	12566000	17457000	32888	4951	31099	203677;203678;203679;203680	275298;275299;275300;275301;275302;275303	275299			6	
LNLNNTVLSK	1	Unmodified	1114.6346	0.63462279	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.92	5.93	3	3	3				1	3		2	4	4	3	55.129	51.335	2	4.9264E-05	43959	160511_QHF_FH_JSI12i_3	93.111	57.815			1.0666	1.1682	14.358	13	1	Median	1.0949	0.91362	8.1918	2	0	Median	0.92006	1.1008	11.01	4	0	Median	1.3065	1.2701	7.5148	4	1	Median	0.92358	0.9417	13.988	3	0	Plateau	3472800000	1621800000	1851000000	413800000	193620000	220180000	780050000	407360000	372700000	1139000000	546620000	592360000	1140000000	474190000	665770000	32889	878	31100	203681;203682;203683;203684;203685;203686;203687;203688;203689;203690;203691;203692;203693	275304;275305;275306;275307;275308;275309;275310;275311;275312;275313;275314;275315;275316	275316			13	
LNLPPYLTQEAR	0	Unmodified	1413.7616	0.76161421	1229	P23443	RPS6KB1	Ribosomal protein S6 kinase beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	78.107	68.807	2	3.7439E-05	36137	160513_QHF_FH_JSI12Kac_6	94.309	54.687			1.0425	1.0841	19.558	7	1	Median	1.5567	1.3133	21.185	2	0	Median	0.78027	0.93443	21.017	2	1	Median	1.0275	0.97516	1.3426	2	0	Median	1.0425	1.1234	NaN	1	0	Median	122690000	59884000	62806000	24305000	8170100	16135000	41960000	24758000	17202000	35163000	17423000	17740000	21262000	9533400	11729000	32890	1229	31101	203694;203695;203696;203697;203698;203699;203700	275317;275318;275319;275320;275321;275322;275323;275324;275325	275324			9	
LNLQFLTLHDYLLR	0	Unmodified	1757.9828	0.98284038	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	2	3	2	95.903	91.126	3	3.9924E-31	46244	160513_QHF_FH_JSI9Kac_6	169.4	144.67			0.83816	0.88917	29.255	9	1	Median	1.4141	1.1655	25.121	2	0	Median	0.74454	0.86749	6.356	2	0	Median	0.97301	0.88835	48.308	3	1	Median	0.80237	0.82488	10.614	2	0	Median	2547400000	1361200000	1186200000	442600000	225940000	216660000	952630000	514420000	438210000	651990000	309910000	342090000	500130000	310890000	189240000	32891	408	31102	203701;203702;203703;203704;203705;203706;203707;203708;203709	275326;275327;275328;275329;275330;275331;275332;275333;275334;275335	275331			10	
LNLQQSGSFQYYFLQGNEK	1	Unmodified	2263.0909	0.090946857	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.769	88.659	3	0.007991	76992	160511_QHF_FH_JSI12i_3	40.432	31.831			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32892	1435	31103	203710	275336	275336			1	
LNLSTRPEK	1	Unmodified	1056.5928	0.59275797	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							3	3	3		21.509	20.723	2;3	0.0012954	17820	160511_QHF_FH_JSI10i_2	64.711	32.391			1.0678	0.9314	14.836	9	0	Median	1.1534	0.9276	10.764	3	0	Median	0.7964	0.9314	22.903	3	0	Median	0.98629	0.92638	12.207	3	0	Plateau	NaN	NaN	NaN	0	0	Median	6425700000	3183000000	3242800000	2866800000	1296300000	1570600000	2102300000	1175600000	926660000	1456600000	711060000	745560000	0	0	0	32893	1282	31104	203711;203712;203713;203714;203715;203716;203717;203718;203719	275337;275338;275339;275340;275341;275342;275343;275344;275345	275344			9	
LNLSTRPEKFLGDIEVWDQAEK	2	Acetyl (K)	2629.3388	0.3387817	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		90.628	81.279	3	0.0013638	45537	160513_QHF_FH_JSI11Kac_6	95.357	74.918			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18834000	18834000	0	0	0	0	0	0	0	18834000	18834000	0	0	0	0	32894	1282	31105	203720	275346	275346	1201		1	
LNLVVKPLEK	2	Unmodified	1151.7278	0.72779489	1001	P11441	UBL4A	Ubiquitin-like protein 4A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	54.761	53.86	2;3	0.00055857	47416	160511_QHF_FH_JSI11i_3	69.979	45.125			0.77118	0.71049	36.491	2	2	Median	1.1278	0.91964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52731	0.5489	NaN	1	1	Median	58874000	36158000	22716000	18565000	10361000	8203900	0	0	0	0	0	0	40309000	25797000	14512000	32895	1001	31106	203721;203722;203723;203724;203725;203726	275347;275348;275349;275350;275351;275352	275347			6	
LNLYELK	1	Unmodified	891.50657	0.50656873	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.97	1	4						2		1	1	3	2	61.706	58.039	2	0.0080681	50183	160511_QHF_FH_JSI11i_2	85.064	21.584			0.89237	0.90766	26.866	7	0	Median	0.8533	0.72928	NaN	1	0	Median	0.7121	0.88709	NaN	1	0	Median	0.89237	0.90766	11.636	3	0	Median	1.1594	1.2903	34.04	2	0	Median	1129600000	721140000	408440000	175570000	90460000	85107000	174460000	109960000	64506000	492100000	341090000	151010000	287450000	179630000	107820000	32896	1672	31107	203727;203728;203729;203730;203731;203732;203733	275353;275354;275355;275356;275357;275358;275359;275360;275361;275362;275363	275359			11	
LNLYELKEGR	1	Acetyl (K)	1275.6823	0.68230126	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	77.633	68.332	2	1.4287E-05	35873	160513_QHF_FH_JSI12Kac_6	106.62	72.232			1.1712	1.1146	7.3611	7	0	Median	1.3727	1.1672	1.3646	2	0	Median	0.92348	1.107	0.96718	2	0	Median	1.2609	1.2194	14.202	2	0	Median	1.0268	1.1003	NaN	1	0	Median	494800000	250990000	243810000	102040000	46074000	55965000	166490000	90699000	75793000	162010000	82806000	79207000	64253000	31412000	32840000	32897	1672	31108	203734;203735;203736;203737;203738;203739;203740	275364;275365;275366;275367;275368;275369;275370;275371	275370	1694		8	
LNMELSEK	1	Unmodified	962.47428	0.47428232	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	37.453	36.623	2	0.00044914	31242	160511_QHF_FH_JSI11i_2	107.9	53.69			1.154	1.2033	58.117	9	0	Median	1.154	0.98006	106.92	3	0	Median	0.89134	1.0732	8.1525	2	0	Median	1.2622	1.2631	6.8523	2	0	Median	1.1266	1.2398	1.5355	2	0	Median	3027500000	1675900000	1351600000	580310000	325510000	254800000	829830000	519730000	310100000	890770000	458890000	431880000	726550000	371770000	354780000	32898	1332	31109	203741;203742;203743;203744;203745;203746;203747;203748;203749	275372;275373;275374;275375;275376;275377;275378;275379;275380;275381;275382;275383;275384;275385;275386;275387;275388;275389;275390;275391	275388			20	
LNMHMNVQNGK	1	Unmodified	1284.6067	0.60671025	823	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				27.011	25.657	3	2.3471E-05	20839	160511_QHF_FH_JSI9i_3	98.04	91.764			1.6767	1.3813	NaN	1	1	Median	1.6767	1.3813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18731000	5760100	12971000	18731000	5760100	12971000	0	0	0	0	0	0	0	0	0	32899	823	31110	203750	275392	275392			1	
LNMHNLVEPVNK	1	Unmodified	1406.734	0.73401926	4904	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.166	47.926	3	0.007269	41011	160511_QHF_FH_JSI12i_3	42.446	34.535			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32900	4904	31111	203751	275393	275393			1	
LNMILVQILK	1	Unmodified	1183.7363	0.73625109	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	3	2	2	96.828	93.084	2	1.9485E-13	46078	160513_QHF_FH_JSI9Kac_6	160.88	113.68			1.0219	0.9758	22.534	9	1	Median	1.0358	0.85446	2.5997	2	0	Median	0.82076	0.9758	27.969	3	1	Median	1.4106	1.3194	19.773	2	0	Median	0.93873	0.9657	3.2754	2	0	Median	9867400000	4776700000	5090700000	2450700000	1255800000	1194900000	2833100000	1521300000	1311800000	2942400000	1106300000	1836100000	1641300000	893330000	747940000	32901	231	31112	203752;203753;203754;203755;203756;203757;203758;203759;203760	275394;275395;275396;275397;275398;275399;275400;275401;275402;275403;275404;275405;275406;275407;275408;275409	275403			16	
LNMILVQILK	1	Oxidation (M)	1199.7312	0.73116571	231	O14980	XPO1	Exportin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			3						3	2	2		2	84.307	79.936	2	0.010189	39746	160513_QHF_FH_JSI12Kac_6	68.625	57.991			3.9597	1.5242	62.197	6	3	Linear	2.5028	2.1269	112.12	2	1	Median	1.5064	1.7536	58.629	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3855	1.467	44.209	2	1	Median	426750000	125940000	300810000	99415000	19076000	80339000	175350000	57538000	117810000	0	0	0	151980000	49327000	102660000	32902	231	31112	203761;203762;203763;203764;203765;203766	275410;275411;275412;275413;275414	275413		100	5	
LNMTPEEAER	0	Unmodified	1188.5445	0.54448715	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	2	2	1	30.319	29.591	2	3.2155E-05	26573	160511_QHF_FH_JSI12i_1	96.331	64.397			0.88411	0.91549	16.876	6	0	Median	1.2023	0.99214	16.042	2	0	Median	0.88411	1.0497	14.67	2	0	Median	0.77419	0.74938	NaN	1	0	Median	0.79334	0.8364	NaN	1	0	Median	1559800000	748290000	811540000	336470000	131670000	204790000	480630000	263200000	217430000	301380000	122540000	178840000	441360000	230880000	210480000	32903	1909	31113	203767;203768;203769;203770;203771;203772;203773	275415;275416;275417;275418;275419;275420;275421;275422;275423;275424	275418			10	
LNNAPVAGYEGDVGSK	1	Unmodified	1589.7686	0.76855009	2301	Q11206	ST3GAL4	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	39.937	39.025	2	4.1472E-05	35485	160511_QHF_FH_JSI12i_1	82.543	63.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32904	2301	31114	203774;203775	275425;275426	275425			2	
LNNCGMGIGGGK	1	Unmodified	1176.538	0.53796198	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	25.182	24.376	2	0.00074089	20302	160511_QHF_FH_JSI11i_2	78.934	51.192			1.0742	1.1207	25.001	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3423	1.3374	NaN	1	1	Median	0.8596	0.93909	NaN	1	1	Median	72361000	33401000	38960000	0	0	0	0	0	0	50938000	22569000	28369000	21424000	10833000	10591000	32905	1578	31115	203776;203777;203778	275427;275428;275429	275429			3	
LNNEEHNELREVDGTAK	1	Unmodified	1966.9344	0.93444622	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	22.585	22.58	4	0.00014906	18640	160511_QHF_FH_JSI12i_3	49.993	32.774			1.0893	1.064	11.744	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2214	1.1561	NaN	1	0	Median	0.97154	0.9792	NaN	1	0	Median	86469000	42077000	44392000	0	0	0	0	0	0	57128000	25706000	31422000	29342000	16371000	12971000	32906	2437	31116	203779;203780	275430	275430			1	
LNNELLAKFLEK	2	Acetyl (K)	1472.8239	0.82388012	61	CON__P34955			yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.184	82.875	2;3	1.025E-20	46138	160513_QHF_FH_JSI11Kac_6	161.1	141.79		+	0.77294	0.82479	18.384	8	0	Median	1.0864	0.91542	8.5166	2	0	Median	0.82721	0.97807	2.3213	2	0	Median	0.69481	0.6667	3.8628	2	0	Median	0.67592	0.71514	13.945	2	0	Median	1213400000	716380000	497030000	173590000	71199000	102390000	218300000	123070000	95236000	442620000	288440000	154180000	378900000	233670000	145230000	32907	61	31117	203781;203782;203783;203784;203785;203786;203787;203788	275431;275432;275433;275434;275435;275436;275437;275438;275439;275440	275431	40		9	
LNNLHVQR	0	Unmodified	992.55156	0.55156186	5073	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				14.004	13.111	3	0.0045846	10249	160511_QHF_FH_JSI9i_3	58.815	0			1.6783	1.3399	NaN	1	1	Median	1.6783	1.3399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159760000	46236000	113530000	159760000	46236000	113530000	0	0	0	0	0	0	0	0	0	32908	5073	31118	203789;203790	275441;275442	275441			2	
LNNLVLFDK	1	Unmodified	1074.6073	0.6073454	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.26	4	2	4				4	4		2	6	5	5	71.65	66.536	2	4.2746E-07	58018	160511_QHF_FH_JSI12i_2	138.98	107.55			1.0216	1.0652	44.243	18	4	Median	1.3852	1.1306	10.378	2	0	Median	0.87591	1.0365	52.838	6	2	Median	1.0384	1.0125	37.093	5	1	Median	1.0051	1.08	49.486	5	1	Median	10483000000	5191300000	5291900000	387080000	152520000	234560000	1075000000	556100000	518880000	5183500000	2615900000	2567600000	3837600000	1866800000	1970800000	32909	2026	31119	203791;203792;203793;203794;203795;203796;203797;203798;203799;203800;203801;203802;203803;203804;203805;203806;203807;203808	275443;275444;275445;275446;275447;275448;275449;275450;275451;275452;275453;275454;275455;275456;275457;275458;275459;275460;275461;275462;275463;275464;275465;275466;275467;275468;275469;275470	275449			28	
LNNLVLFDKATYDK	2	Acetyl (K)	1694.8879	0.88793694	2026	P62851	RPS25	40S ribosomal protein S25	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		84.785	74.268	2;3	0.00058917	39115	160513_QHF_FH_JSI11Kac_5	87.363	71.824			0.48767	0.47569	3.7932	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48767	0.47569	3.7932	2	0	Median	NaN	NaN	NaN	0	0	Median	22051000	14374000	7677900	0	0	0	0	0	0	22051000	14374000	7677900	0	0	0	32910	2026	31120	203809;203810	275471;275472;275473;275474	275472	2070		4	
LNNSLHFAQVR	0	Unmodified	1297.6891	0.68911797	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			38.03	36.556	3	0.015241	30443	160511_QHF_FH_JSI10i_3	24.5	21.008			1.1727	1.157	6.9516	2	0	Median	1.5127	1.2153	NaN	1	0	Median	0.90918	1.1015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208860000	93776000	115090000	125230000	52945000	72281000	83638000	40831000	42808000	0	0	0	0	0	0	32911	2592	31121	203811;203812	275475;275476	275475			2	
LNNTPDSDWLQLK	1	Unmodified	1542.7678	0.7678218	5397	Q9ULF5	SLC39A10	Zinc transporter ZIP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.134	69.584	2	0.00028899	63383	160511_QHF_FH_JSI12i_1	86.463	62.858			0.95128	0.96737	15.975	4	1	Median	0.94552	0.77287	NaN	1	0	Median	0.95708	1.1213	NaN	1	1	Median	1.0594	1.0211	NaN	1	0	Median	0.88171	0.91642	NaN	1	0	Median	237680000	110410000	127280000	35658000	15823000	19834000	58069000	26282000	31786000	79902000	37076000	42826000	64056000	31225000	32831000	32912	5397	31122	203813;203814;203815;203816	275477;275478;275479;275480;275481	275478			5	
LNPADAPNPVVFVATK	1	Unmodified	1651.8934	0.89335667	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	80.629	80.055	2;3	5.362E-05	71068	160511_QHF_FH_JSI9i_1	114.56	104.61			1.011	0.93374	12.734	12	0	Median	1.0909	0.9	14.55	3	0	Median	0.74695	0.88975	3.0688	3	0	Median	1.0858	1.0526	8.9994	3	0	Median	1.0656	1.1073	18.476	3	0	Median	816640000	398440000	418210000	169180000	76901000	92279000	187660000	117270000	70387000	250040000	112220000	137820000	209770000	92047000	117720000	32913	606	31123	203817;203818;203819;203820;203821;203822;203823;203824;203825;203826;203827;203828	275482;275483;275484;275485;275486;275487;275488;275489;275490;275491;275492;275493;275494;275495;275496;275497;275498;275499;275500;275501;275502;275503;275504	275496			23	
LNPEDIK	1	Unmodified	827.43888	0.43888309	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		30.664	30.054	2	0.049808	26342	160511_QHF_FH_JSI9i_1	42.914	5.8206			0.66323	0.74146	19.484	3	0	Plateau	1.1251	0.91976	NaN	1	0	Median	0.73651	0.86141	NaN	1	0	Median	0.64582	0.63822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	272100000	173010000	99088000	73139000	44575000	28564000	97191000	63733000	33458000	101770000	64704000	37067000	0	0	0	32914	1798	31124	203829;203830;203831	275505	275505			1	
LNPEDIKK	2	Unmodified	955.53385	0.53384611	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.38	4	10	5				1	2		4	5	5	8	24.728	22.889	2;3	0.00038226	18969	160511_QHF_FH_JSI12i_3	87.639	64.568			1.2729	1.1605	51.778	22	10	Median	1.2891	1.0886	22.43	4	0	Median	0.89566	1.0805	60.355	5	3	Median	1.2061	1.1923	48.836	5	2	Median	1.4797	1.5454	62.007	8	5	Median	3060500000	1426800000	1633800000	392560000	163300000	229270000	834560000	408440000	426120000	951190000	444360000	506830000	882220000	410670000	471550000	32915	1798	31125	203832;203833;203834;203835;203836;203837;203838;203839;203840;203841;203842;203843;203844;203845;203846;203847;203848;203849;203850;203851;203852;203853	275506;275507;275508;275509;275510;275511;275512;275513;275514;275515;275516;275517;275518;275519;275520;275521;275522;275523;275524;275525;275526;275527;275528;275529;275530;275531;275532;275533;275534;275535;275536	275536			31	
LNPFGNTFLNR	0	Unmodified	1291.6673	0.6673199	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			76.285	74.857	2	0.010546	62716	160511_QHF_FH_JSI10i_3	47.187	12.8			1.1982	1.1707	53.616	2	1	Median	2.0729	1.7105	NaN	1	1	Median	0.69253	0.80133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117730000	46777000	70953000	75601000	23538000	52063000	42129000	23239000	18890000	0	0	0	0	0	0	32916	5163	31126	203854;203855	275537;275538	275537			2	
LNPINTTLLK	1	Unmodified	1125.6758	0.67575932	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	64.385	63.622	2	3.7324E-05	54901	160511_QHF_FH_JSI12i_2	95.358	60.534			1.0642	0.8334	19.117	4	0	Linear	1.1816	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95843	0.92355	NaN	1	0	Median	1.0927	1.1674	26.839	2	0	Median	477810000	234930000	242880000	102730000	48108000	54625000	0	0	0	150130000	75415000	74718000	224940000	111400000	113540000	32917	5288	31127	203856;203857;203858;203859	275539;275540;275541	275540			3	
LNPLVLLLDAALTGELEVVQQAVK	1	Unmodified	2545.4731	0.47309034	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.84	100.12	3	2.0377E-23	59338	160513_QHF_FH_JSI10Kac_6	132.84	128.49			0.62251	0.74723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62251	0.74723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94387000	60586000	33800000	0	0	0	94387000	60586000	33800000	0	0	0	0	0	0	32918	3760	31128	203860	275542;275543	275543			2	
LNPNFLVDFGK	1	Unmodified	1262.6659	0.66592292	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	89.519	88.959	2	8.0088E-08	78985	160511_QHF_FH_JSI10i_2	125.48	91.683			1.0472	1.0568	16.386	9	0	Median	1.1552	0.96019	21.92	2	0	Median	0.72794	0.8537	9.9728	2	0	Median	1.0651	1.0568	10.365	3	0	Median	1.1044	1.177	6.9093	2	0	Median	1525500000	699330000	826160000	264960000	108680000	156280000	299080000	172720000	126360000	537360000	247960000	289390000	424090000	169960000	254120000	32919	2374	31129	203861;203862;203863;203864;203865;203866;203867;203868;203869;203870	275544;275545;275546;275547;275548;275549;275550;275551;275552;275553;275554;275555;275556;275557;275558;275559;275560;275561;275562;275563	275560			20	
LNPQYPMFR	0	Unmodified	1164.575	0.57499942	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	56.187	55.424	2	0.00021913	47892	160511_QHF_FH_JSI11i_2	100.74	81.96			1.2156	1.0655	12.821	8	3	Median	1.2738	1.0577	4.1096	2	1	Median	0.69707	0.85261	NaN	1	0	Median	1.2076	1.1631	10.992	3	2	Median	1.0693	1.1458	13.343	2	0	Median	1038500000	492510000	545960000	143780000	72072000	71711000	128650000	67298000	61348000	380470000	172150000	208320000	385560000	180990000	204570000	32920	2570	31130	203871;203872;203873;203874;203875;203876;203877;203878;203879	275564;275565;275566;275567;275568;275569;275570;275571;275572;275573;275574;275575	275570			12	
LNPTGAAPAGCAAHSAVAMGK	1	Unmodified	1950.9404	0.94039999	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.767	39.571	3	0.0097378	33653	160511_QHF_FH_JSI12i_3	23.601	18.7			0.57017	0.56795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57017	0.56795	NaN	1	0	Median	61033000	38708000	22326000	0	0	0	0	0	0	0	0	0	61033000	38708000	22326000	32921	3289	31131	203880	275576	275576			1	
LNPTWNHPDQDTEAGFK	1	Unmodified	1968.8966	0.89660415	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	47.803	47.25	2;3	4.7832E-31	40263	160511_QHF_FH_JSI12i_3	158.64	149.46			0.97334	0.9938	14.794	8	0	Median	1.1352	1.0016	NaN	1	0	Median	0.82071	0.98602	NaN	1	0	Median	0.83928	0.80699	25.342	3	0	Plateau	0.91522	0.97682	7.2188	3	0	Median	1452200000	673830000	778370000	102030000	50597000	51431000	155140000	75993000	79148000	583960000	253850000	330110000	611080000	293400000	317680000	32922	4834	31132	203881;203882;203883;203884;203885;203886;203887;203888;203889	275577;275578;275579;275580;275581;275582;275583;275584;275585;275586;275587;275588;275589;275590;275591;275592;275593;275594;275595;275596;275597;275598;275599;275600;275601	275600			25	
LNPVGAK	1	Unmodified	697.41227	0.41227441	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	15.053	14.519	2	0.020338	11573	160511_QHF_FH_JSI11i_2	57.102	26.434			0.77772	0.83182	41.331	6	1	Median	0.9241	0.78605	NaN	1	0	Median	0.77772	0.92883	7.597	2	0	Median	0.97564	0.97983	NaN	1	0	Median	0.45752	0.49283	57.635	2	1	Median	848580000	449160000	399420000	143270000	70183000	73088000	249860000	128770000	121090000	197130000	107940000	89192000	258310000	142270000	116040000	32923	4832	31133	203890;203891;203892;203893;203894;203895	275602;275603;275604;275605;275606	275605			5	
LNPYAKTMR	1	Acetyl (K)	1134.5856	0.5855641	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1		By MS/MS			15	0.816							1	1	1		3			47.878	38.158	2	0.039125	21066	160513_QHF_FH_JSI10Kac_6	46.129	29.985			1.1673	1.5324	8.1768	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1673	1.5324	8.1768	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20630000	9778600	10851000	0	0	0	20630000	9778600	10851000	0	0	0	0	0	0	32924	1457	31134	203896;203897;203898	275607	275607			1	
LNQDQLDAVSK	1	Unmodified	1229.6252	0.62518031	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	38.783	35.014	2	5.2126E-07	30626	160511_QHF_FH_JSI9i_1	114.86	94.162			0.89449	0.94656	43.338	8	2	Median	1.1819	0.97324	NaN	1	0	Median	0.76858	0.90457	2.4868	2	0	Median	1.1085	1.0828	9.1269	2	0	Median	0.75912	0.83633	79.736	3	2	Median	4649500000	2250800000	2398700000	788690000	337010000	451680000	1027300000	584320000	442950000	1213100000	607370000	605690000	1620500000	722150000	898360000	32925	2536	31135	203899;203900;203901;203902;203903;203904;203905;203906	275608;275609;275610;275611;275612;275613;275614;275615;275616;275617;275618;275619	275617			12	
LNQENEHIYNLWCSGR	0	Unmodified	2031.9221	0.92210739	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		56.735	56.735	2;3	0.00010019	50389	160511_QHF_FH_JSI11i_3	68.82	59.24			0.8369	0.77509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8369	0.77509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68667000	39603000	29064000	0	0	0	0	0	0	68667000	39603000	29064000	0	0	0	32926	3959	31136	203907;203908	275620;275621;275622	275621			3	
LNQEQNAK	1	Unmodified	943.47231	0.47230849	2458	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.0893	4.5133	2	0.016662	2428	160511_QHF_FH_JSI9i_1	49.325	20.427			1.3717	1.0967	NaN	1	0	Median	1.3717	1.0967	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41411000	19467000	21943000	41411000	19467000	21943000	0	0	0	0	0	0	0	0	0	32927	2458	31137	203909	275623	275623			1	
LNQGTER	0	Unmodified	816.40898	0.40897995	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6	5.66		2					1				1	2		4.9286	2.1951	2	0.023546	1591	160513_QHF_FH_JSI11Kac_4	67.035	18.274			1.0794	1.1064	15.537	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0544	1.2727	NaN	1	0	Median	1.0139	1.0162	12.038	2	0	Median	NaN	NaN	NaN	0	0	Median	526970000	271170000	255800000	0	0	0	230550000	123360000	107190000	296420000	147800000	148610000	0	0	0	32928	1100	31138	203910;203911;203912	275624;275625;275626	275624			3	
LNQIMVGTGNGLAK	1	Unmodified	1414.7602	0.76023401	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.389	50.862	2	0.0012187	43868	160511_QHF_FH_JSI11i_2	78.342	52.956			2.9136	2.9646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9136	2.9646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27599000	5897100	21702000	0	0	0	0	0	0	27599000	5897100	21702000	0	0	0	32929	5063	31139	203913	275627	275627			1	
LNQLKPGLQYK	2	Unmodified	1300.7503	0.75032125	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	34.829	34.081	2;3	7.8527E-05	27893	160511_QHF_FH_JSI9i_3	107.57	89.71			1.1369	1.1774	23.233	8	1	Median	1.5366	1.2185	4.8308	2	0	Median	1.0033	1.1712	0.72292	2	0	Median	1.4685	1.3959	18.055	2	1	Median	0.79912	0.80222	7.1196	2	0	Median	5358300000	2564100000	2794200000	1360700000	572800000	787940000	1536200000	797300000	738890000	1253000000	562410000	690640000	1208300000	631580000	576740000	32930	2325	31140	203914;203915;203916;203917;203918;203919;203920;203921	275628;275629;275630;275631;275632;275633;275634;275635;275636;275637;275638;275639;275640;275641	275636			14	
LNQLKPGLQYK	2	Acetyl (K)	1342.7609	0.76088593	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		61.52	50.542	2	0.027253	27580	160513_QHF_FH_JSI11Kac_5	55.567	32.926			0.34011	0.33154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34011	0.33154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8662500	6993900	1668600	0	0	0	0	0	0	8662500	6993900	1668600	0	0	0	32931	2325	31140	203922;203923	275642;275643	275643			2	
LNQLWEK	1	Unmodified	929.49707	0.49706667	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.645	38.193	2	0.029577	32713	160511_QHF_FH_JSI11i_2	54.611	26.083			0.80942	0.82998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80942	0.82998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	137160000	85912000	51244000	0	0	0	0	0	0	137160000	85912000	51244000	0	0	0	32932	1357	31141	203924	275644	275644			1	
LNQMDQDK	1	Unmodified	990.44404	0.44404482	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.9589	8.8362	2	0.0016004	6490	160511_QHF_FH_JSI11i_1	101.25	67.08			0.86701	0.8557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86701	0.8557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	232030000	120510000	111520000	0	0	0	0	0	0	232030000	120510000	111520000	0	0	0	32933	1674	31142	203925	275645	275645			1	
LNQNLNDVLVGLEK	1	Unmodified	1567.857	0.85697116	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	81.881	81.413	2	0.0023182	73781	160511_QHF_FH_JSI10i_1	71.268	44.754			0.9661	0.93401	18.8	4	2	Median	0.99413	0.7953	NaN	1	0	Median	0.93886	1.095	NaN	1	1	Median	1.147	1.1095	NaN	1	1	Median	0.74564	0.79671	NaN	1	0	Median	217770000	116970000	100800000	39922000	21996000	17926000	72265000	39117000	33149000	61143000	29193000	31950000	44442000	26663000	17779000	32934	146	31143	203926;203927;203928;203929	275646;275647;275648	275647			3	
LNQPELVAQK	1	Unmodified	1138.6346	0.63462279	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		34.291	34.044	2	0.031275	30486	160511_QHF_FH_JSI11i_1	39.547	22.709			0.72835	0.68839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72835	0.68839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51058000	33104000	17954000	0	0	0	0	0	0	51058000	33104000	17954000	0	0	0	32935	2245	31144	203930	275649	275649			1	
LNQPPEDGISSVK	1	Unmodified	1382.7042	0.70415892	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.014	35.406	2	4.108E-10	31673	160511_QHF_FH_JSI11i_1	143	115.22			0.88306	0.88705	5.1154	4	0	Median	1.0543	0.85766	NaN	1	0	Median	0.76039	0.91745	NaN	1	0	Median	0.96778	0.9439	NaN	1	0	Median	0.80575	0.85005	NaN	1	0	Median	2452900000	1210100000	1242800000	387790000	178190000	209600000	668090000	367060000	301030000	782110000	331200000	450920000	614910000	333620000	281300000	32936	359	31145	203931;203932;203933;203934	275650;275651;275652;275653;275654;275655;275656;275657;275658;275659;275660;275661;275662;275663;275664;275665	275650			16	
LNQQAHQLAFDSVFLR	0	Unmodified	1885.9799	0.97988027	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	73.346	72.551	3	5.8811E-06	60933	160511_QHF_FH_JSI10i_3	108.63	93.676			0.84895	0.92838	25.92	5	1	Median	1.7081	1.4319	NaN	1	0	Median	0.91154	1.0755	20.801	2	1	Median	0.84895	0.80024	NaN	1	0	Median	0.77962	0.82316	NaN	1	0	Median	184820000	96606000	88211000	15624000	5321600	10303000	64290000	32146000	32145000	57781000	35752000	22029000	47122000	23387000	23734000	32937	2119	31146	203935;203936;203937;203938;203939	275666;275667;275668;275669;275670;275671;275672	275669			7	
LNQQFVHFTQLDLSYLQR	0	Unmodified	2249.1593	0.15930119	1279	P26572	MGAT1	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			93.166	92.189	3	0.058228	76961	160511_QHF_FH_JSI10i_3	17.296	8.1998			1.3789	1.5908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3789	1.5908	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11020000	5728200	5291300	0	0	0	11020000	5728200	5291300	0	0	0	0	0	0	32938	1279	31147	203940	275673	275673			1	
LNQQPSQGLGPR	0	Unmodified	1293.6789	0.67894722	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	21.563	20.745	2	0.0011004	17089	160511_QHF_FH_JSI12i_2	65.347	49.685			1.0771	1.1849	31.087	3	2	Plateau	2.3834	2.0666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7587	1.7535	NaN	1	1	Median	1.0379	1.1325	NaN	1	0	Median	84616000	36281000	48335000	14547000	4420000	10127000	0	0	0	31376000	11609000	19767000	38693000	20253000	18441000	32939	1463	31148	203941;203942;203943	275674;275675;275676;275677;275678	275676			5	
LNQSPSLAPVK	1	Unmodified	1152.6503	0.65027285	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	34.042	33.393	2	9.9708E-05	30245	160511_QHF_FH_JSI12i_1	87.258	63.103			1.0978	1.0409	11.505	6	5	Median	1.185	0.97279	11.756	2	2	Median	0.85034	1.025	NaN	1	1	Median	1.1898	1.1655	12.014	2	2	Median	0.95462	0.98512	NaN	1	0	Median	481220000	226410000	254820000	141150000	63996000	77154000	79329000	39566000	39763000	180410000	83186000	97220000	80336000	39658000	40678000	32940	4679	31149	203944;203945;203946;203947;203948;203949	275679;275680;275681;275682;275683;275684;275685	275681			7	
LNQSQREELGLIEQAYDNPHEALSR	0	Unmodified	2909.4268	0.42676186	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				70.877	70.023	4	0.0003566	61684	160511_QHF_FH_JSI9i_2	47.237	39.515			0.9665	0.85483	NaN	1	1	Median	0.9665	0.85483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30658000	14266000	16393000	30658000	14266000	16393000	0	0	0	0	0	0	0	0	0	32941	3101	31150	203950	275686	275686			1	
LNQSSPDNVTDTK	1	Unmodified	1417.6685	0.66850169	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			18.944	17.814	2	4.8823E-07	15139	160511_QHF_FH_JSI10i_1	94.692	76.38			1.294	1.057	NaN	1	1	Median	1.294	1.057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17348000	7222900	10125000	17348000	7222900	10125000	0	0	0	0	0	0	0	0	0	32942	2278	31151	203951;203952	275687;275688	275687			2	
LNQVCFDDDGTSSPQDR	0	Unmodified	1952.817	0.8170332	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	40.528	40.205	2	8.5606E-11	36465	160511_QHF_FH_JSI12i_1	103.75	90.324			1.0535	1.0227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0535	1.0227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16537000	8766100	7770600	0	0	0	0	0	0	16537000	8766100	7770600	0	0	0	32943	3503	31152	203953;203954	275689;275690	275690			2	
LNQVIFPVSYNDKFYK	2	Acetyl (K)	2016.0357	0.03566381	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.416								2	7	2	1	4	2	86.249	77.203	2;3	2.5695E-75	44318	160513_QHF_FH_JSI10Kac_6	229.97	192.79			0.80169	0.79038	12.356	9	0	Median	1.155	0.99931	12.253	2	0	Median	0.60642	0.72602	NaN	1	0	Median	0.84634	0.82468	7.8309	4	0	Median	0.73945	0.78965	0.081693	2	0	Median	454810000	243100000	211700000	124320000	50834000	73481000	39503000	22477000	17025000	193600000	115300000	78303000	97384000	54489000	42896000	32944	4614	31153	203955;203956;203957;203958;203959;203960;203961;203962;203963	275691;275692;275693;275694;275695;275696;275697;275698;275699;275700;275701	275701	3197;3198		11	
LNQWCNVVR	0	Unmodified	1187.587	0.58696109	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	41.355	40.778	2	7.0121E-07	35927	160511_QHF_FH_JSI11i_3	137.18	119.79			0.98157	0.8746	19.354	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98157	1.1792	NaN	1	0	Median	0.84737	0.8096	NaN	1	0	Median	1.0317	1.0578	NaN	1	1	Median	541630000	259860000	281770000	0	0	0	90664000	46174000	44490000	183880000	99222000	84660000	267080000	114460000	152620000	32945	878	31154	203964;203965;203966	275702;275703;275704;275705	275703			4	
LNQYFQK	1	Unmodified	939.48142	0.48141661	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.15	3.5	3	4	5					1		3	3	4	3	25.631	25.095	2	0.0085733	20847	160511_QHF_FH_JSI12i_3	71.949	20.377			1.1235	1.0728	20.731	7	1	Median	1.2462	1.062	NaN	1	0	Median	0.89337	1.1091	NaN	1	0	Median	1.1235	1.1513	15.488	3	0	Plateau	1.2247	1.2982	36.983	2	1	Median	2151100000	1098600000	1052500000	328580000	175020000	153560000	369340000	219390000	149950000	852200000	377690000	474520000	600930000	326500000	274430000	32946	2265	31155	203967;203968;203969;203970;203971;203972;203973;203974;203975;203976;203977;203978;203979	275706;275707;275708;275709;275710;275711;275712;275713;275714;275715;275716;275717;275718;275719;275720;275721;275722	275722			17	
LNQYFQKEK	2	Acetyl (K)	1238.6295	0.62953741	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			1	2		45.448	35.174	2	0.00074235	21003	160513_QHF_FH_JSI11Kac_4	94.692	74.905			0.33576	0.33329	76.439	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9456	1.1277	NaN	1	0	Median	0.30695	0.30313	13.414	2	0	Median	NaN	NaN	NaN	0	0	Median	35339000	24249000	11090000	0	0	0	7687700	3801500	3886200	27651000	20447000	7203700	0	0	0	32947	2265	31156	203980;203981;203982	275723;275724;275725	275724	2365		3	
LNRLPAAGVGDMVMATVK	1	Unmodified	1841.9856	0.98555927	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			77.34	75.932	3	3.7952E-07	63753	160511_QHF_FH_JSI10i_3	112.56	94.86			0.86709	0.83848	5.3768	2	0	Median	1.087	0.87097	NaN	1	0	Median	0.69167	0.8072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155700000	81966000	73732000	92904000	44191000	48713000	62794000	37775000	25019000	0	0	0	0	0	0	32948	2022	31157	203983;203984	275726;275727;275728;275729	275727			4	
LNRLPAAGVGDMVMATVK	1	2 Oxidation (M)	1873.9754	0.97538851	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	2	1	By MS/MS				3	0			1							1				50.248	48.644	3	0.0084623	39850	160511_QHF_FH_JSI9i_3	42.068	24.99			1.1218	0.93002	NaN	1	0	Median	1.1218	0.93002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22671000	9452700	13218000	22671000	9452700	13218000	0	0	0	0	0	0	0	0	0	32949	2022	31157	203985	275730	275730		1681;1682	1	
LNSAIIYDRDFSYNYFGFK	1	Unmodified	2332.1164	0.11643333	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.933	77.672	3	5.6115E-06	42822	160513_QHF_FH_JSI11Kac_6	83.849	71.546			0.63243	0.6615	34.257	4	2	Median	0.60512	0.50835	NaN	1	1	Median	0.66097	0.77576	NaN	1	1	Median	0.58176	0.56407	NaN	1	0	Median	1.0197	1.0856	NaN	1	0	Median	573780000	329540000	244240000	170140000	97888000	72250000	234900000	139830000	95070000	68341000	40883000	27457000	100390000	50936000	49458000	32950	1242	31158	203986;203987;203988;203989	275731;275732;275733;275734;275735	275731			5	
LNSASLK	1	Unmodified	731.41775	0.41775372	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.61	2	2	2					1		2	1	2	2	15.105	13.411	2	0.026198	11214	160511_QHF_FH_JSI11i_1	54.205	6.462			1.2383	1.219	46.357	7	1	Median	1.2755	1.049	21.236	2	0	Median	1.2383	1.4948	NaN	1	0	Median	1.2657	1.2618	16.229	2	0	Median	1.4043	1.4767	103.61	2	1	Median	3492700000	1517000000	1975700000	236270000	99087000	137180000	662880000	290640000	372240000	1785000000	766840000	1018200000	808490000	360410000	448080000	32951	893	31159	203990;203991;203992;203993;203994;203995;203996	275736;275737;275738;275739;275740;275741	275736			6	
LNSEMDITPK	1	Unmodified	1146.5591	0.55907458	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	37.558	36.948	2	0.00056139	33534	160511_QHF_FH_JSI12i_1	82.287	60.987			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32952	5161	31160	203997;203998;203999;204000;204001	275742;275743;275744;275745;275746	275744			5	
LNSGDYK	1	Unmodified	795.37628	0.37628284	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	10.091	9.7109	2	0.034446	7460	160511_QHF_FH_JSI10i_1	50.127	27.107			0.9588	0.99974	4.5503	4	0	Median	1.2406	1.0228	NaN	1	0	Median	0.89956	1.0683	NaN	1	0	Median	1.0061	0.97724	NaN	1	0	Median	0.91369	0.96776	NaN	1	0	Median	2907400000	1410800000	1496500000	732370000	304600000	427770000	740270000	411740000	328530000	674310000	298480000	375830000	760410000	396020000	364390000	32953	3213	31161	204002;204003;204004;204005	275747;275748;275749	275747			3	
LNSIGNYYK	1	Unmodified	1070.5397	0.53965977	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	36.365	35.709	2	0.00065578	31334	160511_QHF_FH_JSI10i_2	76.605	38.282			0.90779	0.91686	29.968	6	1	Median	0.97909	0.84195	NaN	1	0	Median	0.78012	0.9474	NaN	1	0	Median	0.97689	0.96357	16.764	2	0	Median	1.2014	1.2808	51.912	2	1	Median	967500000	480220000	487280000	180680000	74433000	106240000	199620000	105550000	94072000	358520000	190010000	168510000	228680000	110230000	118450000	32954	2664	31162	204006;204007;204008;204009;204010;204011;204012	275750;275751;275752;275753;275754;275755;275756;275757;275758	275757			9	
LNSKPPNIGFK	2	Unmodified	1213.6819	0.68190733	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	37.727	36.696	3	0.0092465	31225	160511_QHF_FH_JSI12i_3	47.844	35.267			0.82084	0.66914	22.288	3	2	Plateau	0.84988	0.68987	NaN	1	0	Median	0.40033	0.45785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47797	0.48296	NaN	1	1	Median	1663300000	1005200000	658190000	376170000	109450000	266730000	613100000	450470000	162630000	0	0	0	674070000	445230000	228840000	32955	5505	31163	204013;204014;204015	275759;275760;275761;275762	275762			4	
LNSLAIGLR	0	Unmodified	955.58147	0.581465	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	55.213	54.542	2	0.027253	48245	160511_QHF_FH_JSI10i_2	40.778	10.971			1.1672	1.1657	9.9403	4	0	Median	1.5513	1.2996	NaN	1	0	Median	0.82412	1.021	NaN	1	0	Median	1.1886	1.1819	NaN	1	0	Median	1.1463	1.1497	NaN	1	0	Median	375410000	185310000	190100000	69601000	30800000	38801000	78444000	42501000	35944000	66107000	30161000	35946000	161260000	81852000	79405000	32956	1837	31164	204016;204017;204018;204019	275763	275763			1	
LNSLCMAWLVDHVYAIR	0	Unmodified	2060.0336	0.033572095	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.454	84.106	3	1.4789E-05	48976	160513_QHF_FH_JSI10Kac_6	92.474	82.724			1.2873	1.2251	34.863	4	0	Median	1.7023	1.473	NaN	1	0	Median	0.86703	1.019	NaN	1	0	Median	0.97344	0.92737	NaN	1	0	Median	1.8685	1.9775	NaN	1	0	Median	2285300000	1086500000	1198800000	241930000	95891000	146040000	898430000	510050000	388370000	731280000	345410000	385860000	413660000	135110000	278560000	32957	1345;1346	31165	204020;204021;204022;204023	275764;275765;275766;275767;275768;275769;275770;275771	275771			8	
LNSLCMAWLVDHVYAIR	0	Oxidation (M)	2076.0285	0.028486717	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	84.471	75.345	3	0.00033968	40107	160513_QHF_FH_JSI12Kac_6	64.83	52.339			1.8181	1.7132	6.7766	3	2	Median	2.165	1.865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8181	1.7132	NaN	1	1	Median	1.5509	1.6312	NaN	1	0	Median	352590000	133280000	219310000	106670000	37266000	69404000	0	0	0	52757000	15229000	37528000	193160000	80783000	112380000	32958	1345;1346	31165	204024;204025;204026	275772;275773;275774	275774		986	3	
LNSLMSLVNK	1	Unmodified	1117.6165	0.61652988	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	2	2	68.875	67.95	2	9.427E-06	56761	160511_QHF_FH_JSI10i_3	105.4	75.142			0.91166	0.95576	32.675	9	2	Median	1.0763	0.9226	63.202	3	2	Median	0.85118	1.0028	3.7641	2	0	Median	0.94999	0.94755	12.283	2	0	Median	0.83375	0.87143	13.064	2	0	Median	2491600000	1207300000	1284300000	598160000	270200000	327970000	516480000	246500000	269990000	561630000	308960000	252670000	815280000	381600000	433680000	32959	110	31166	204027;204028;204029;204030;204031;204032;204033;204034;204035	275775;275776;275777;275778;275779;275780;275781;275782;275783;275784;275785	275777			11	
LNSNEAR	0	Unmodified	802.39333	0.39332988	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	5.0807	3.9227	2	0.009364	2596	160511_QHF_FH_JSI11i_1	79.469	42.882			1.0767	1.0992	14.238	9	0	Median	1.5404	1.2919	28.586	2	0	Median	0.88413	1.0546	6.2952	2	0	Median	1.0439	1.0992	7.1469	3	0	Plateau	1.0067	1.1097	9.3507	2	0	Median	5439100000	2729200000	2709900000	702650000	282460000	420200000	1522900000	816030000	706850000	1587900000	809670000	778270000	1625600000	821020000	804570000	32960	2094	31167	204036;204037;204038;204039;204040;204041;204042;204043;204044	275786;275787;275788;275789;275790;275791;275792;275793;275794;275795	275786			10	
LNSNTQVVLLSATMPSDVLEVTK	1	Unmodified	2458.2989	0.29889072	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								3	2	2	2	101.22	101.11	2;3	0	91807	160511_QHF_FH_JSI11i_1	380.43	353.46			1.0333	1.0352	17.364	9	0	Median	1.4198	1.1651	12.043	3	0	Median	0.67391	0.79215	10.599	2	0	Median	1.0561	1.0206	3.2211	2	0	Median	0.91054	0.97229	13.259	2	0	Median	3622900000	1881600000	1741200000	650920000	293870000	357050000	751370000	473460000	277910000	1173100000	557290000	615820000	1047500000	557020000	490450000	32961	1917	31168	204045;204046;204047;204048;204049;204050;204051;204052;204053	275796;275797;275798;275799;275800;275801;275802;275803;275804;275805;275806;275807;275808;275809;275810;275811;275812	275799			17	
LNSNTQVVLLSATMPSDVLEVTKK	2	Oxidation (M)	2602.3888	0.38876836	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			4									2	2	85.39	85.309	3	2.8217E-34	74175	160511_QHF_FH_JSI12i_3	173.47	162.01			0.71427	0.84553	14.821	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97281	0.92791	14.27	2	0	Median	0.77998	0.78035	12.465	2	0	Median	326990000	175490000	151500000	0	0	0	0	0	0	111760000	61725000	50035000	215230000	113760000	101470000	32962	1917	31169	204054;204055;204056;204057	275813;275814;275815;275816;275817;275818;275819;275820;275821	275820		1590	9	
LNSNTQVVLLSATMPSDVLEVTKK	2	Unmodified	2586.3939	0.39385374	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.96	4.49	3	9	10						3	4	6	8	7	95.87	94.729	2;3;4	4.7334E-52	83960	160511_QHF_FH_JSI12i_3	207.55	201.19			1.0302	1.002	25.666	23	6	Median	1.0248	0.87955	14.185	4	1	Median	0.87689	1.0725	31.695	5	1	Median	1.0647	1.002	22.926	7	2	Median	0.85661	0.90884	21.728	7	2	Median	3716000000	1794700000	1921200000	345360000	165910000	179450000	526220000	286810000	239410000	995390000	455670000	539730000	1849000000	886330000	962650000	32963	1917	31169	204058;204059;204060;204061;204062;204063;204064;204065;204066;204067;204068;204069;204070;204071;204072;204073;204074;204075;204076;204077;204078;204079;204080;204081;204082	275822;275823;275824;275825;275826;275827;275828;275829;275830;275831;275832;275833;275834;275835;275836;275837;275838;275839;275840;275841;275842;275843;275844;275845;275846;275847;275848;275849;275850;275851;275852;275853;275854;275855;275856;275857;275858;275859;275860;275861;275862	275859			40	
LNSPEETAFQTPK	1	Unmodified	1460.7147	0.7147236	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	44.31	43.433	2	0.00037906	39606	160511_QHF_FH_JSI12i_1	95.618	59.194			0.82614	0.76422	25.712	4	4	Median	0.92564	0.75096	26.138	2	2	Median	0.88304	1.0569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62899	0.64646	NaN	1	1	Median	199430000	100070000	99363000	97890000	49914000	47976000	54513000	22471000	32041000	0	0	0	47030000	27684000	19346000	32964	4425	31170	204083;204084;204085;204086;204087;204088	275863;275864;275865;275866;275867;275868	275864			6	
LNSPIGR	0	Unmodified	755.42899	0.42898711	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			27.721	26.411	2	0.04412	21876	160511_QHF_FH_JSI10i_3	48.761	0			0.27927	0.31967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27927	0.31967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49192000	38800000	10393000	0	0	0	49192000	38800000	10393000	0	0	0	0	0	0	32965	1366	31171	204089	275869	275869			1	
LNSVQSSERPLFLVHPIEGSTTVFHSLASR	0	Unmodified	3307.7313	0.73132372	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	1	1	2	1	81.387	72.926	3;4;5	1.7498E-38	40947	160513_QHF_FH_JSI10Kac_6	138.9	126.84			1.2023	1.4244	19.526	5	0	Median	1.6729	1.4566	NaN	1	0	Median	1.2023	1.4244	NaN	1	0	Median	1.0713	1.0158	2.9413	2	0	Median	1.372	1.4651	NaN	1	0	Median	874750000	377320000	497430000	260280000	90064000	170210000	100220000	42865000	57351000	470300000	223680000	246620000	43962000	20709000	23253000	32966	1650	31172	204090;204091;204092;204093;204094	275870;275871;275872	275872			3	
LNSWIQGVLSHILSALR	0	Unmodified	1906.0789	0.078866029	2154	Q00597	FANCC	Fanconi anemia group C protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.46	94.737	3	0.00028457	55798	160513_QHF_FH_JSI10Kac_6	112.55	96.914			0.70651	0.83285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70651	0.83285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30158000	17255000	12903000	0	0	0	30158000	17255000	12903000	0	0	0	0	0	0	32967	2154	31173	204095	275873	275873			1	
LNTDPMLLQFFK	1	Unmodified	1465.7639	0.7639224	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	2	1	1	101.47	101.34	2	1.2704E-22	89078	160511_QHF_FH_JSI11i_2	171.85	140.43			0.87958	0.95374	27.597	5	1	Median	0.87359	0.73267	37.293	2	0	Median	0.81072	0.97739	NaN	1	0	Median	0.87958	0.88185	NaN	1	0	Median	1.0486	1.1832	NaN	1	1	Median	1087200000	575690000	511520000	209210000	85662000	123550000	237050000	150670000	86380000	353030000	203870000	149170000	287910000	135490000	152420000	32968	3922	31174	204096;204097;204098;204099;204100;204101	275874;275875;275876;275877	275876			4	
LNTIPLFVQLLYSSVENIQR	0	Unmodified	2346.2947	0.29473204	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	101.58	93.468	2;3	3.1068E-44	53412	160513_QHF_FH_JSI9Kac_6	216.19	179.04			1.1212	1.0746	7.5919	6	2	Median	1.3069	1.1032	3.7299	2	1	Median	0.84952	1.0049	5.9621	2	1	Median	1.2441	1.208	NaN	1	0	Median	1.0104	1.0748	NaN	1	0	Median	2006700000	1053300000	953420000	896320000	385290000	511030000	1025100000	628760000	396330000	45469000	20047000	25422000	39820000	19176000	20644000	32969	1065	31175	204102;204103;204104;204105;204106;204107	275878;275879;275880;275881;275882;275883;275884	275879			7	
LNTLETEEWFFK	1	Unmodified	1555.7559	0.75586013	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	93.768	93.01	2	1.5518E-05	81689	160511_QHF_FH_JSI11i_2	93.258	69.653			1.0253	1.0993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0253	1.0993	NaN	1	1	Median	42384000	19513000	22871000	0	0	0	0	0	0	0	0	0	42384000	19513000	22871000	32970	885	31176	204108;204109	275885;275886	275886			2	
LNTLLQR	0	Unmodified	856.51305	0.51305109	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	2	2	33.053	32.295	2	0.0028642	27104	160511_QHF_FH_JSI12i_3	108.24	30.49			0.83045	0.89615	18.719	9	0	Median	1.1705	0.95224	46.978	2	0	Median	0.75258	0.89994	10.366	3	0	Median	0.93871	0.89896	11.887	2	0	Median	0.77816	0.83942	1.6066	2	0	Median	12398000000	6503800000	5894700000	2215600000	996780000	1218800000	3518600000	1877700000	1640900000	2811300000	1397200000	1414100000	3853000000	2232100000	1620900000	32971	2161	31177	204110;204111;204112;204113;204114;204115;204116;204117;204118	275887;275888;275889;275890;275891;275892;275893;275894;275895;275896;275897;275898;275899	275898			13	
LNTMTAAEANEIEDVWQLDLSSR	0	Unmodified	2605.233	0.232996	5212	Q9P2E3	ZNFX1	NFX1-type zinc finger-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	3	1	3	70.134	69.414	4	0.060036	60405	160511_QHF_FH_JSI10i_2	7.1933	1.0326			0.86358	0.9665	9.9011	8	0	Median	1.2635	1.0677	NaN	1	0	Median	0.82001	1.004	4.9014	3	0	Plateau	0.90947	0.93041	NaN	1	0	Median	1.0918	1.1277	15.485	3	0	Plateau	1946100000	1026800000	919330000	240480000	102560000	137930000	821980000	448190000	373790000	138410000	84409000	53999000	745260000	391650000	353610000	32972	5212	31178	204119;204120;204121;204122;204123;204124;204125;204126	275900;275901	275900			2	
LNTQEIFDDWAR	0	Unmodified	1506.7103	0.71030693	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		86.065	85.482	2	8.7686E-05	75165	160511_QHF_FH_JSI11i_2	136.5	118.44			1.2873	1.4247	13.015	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2973	1.562	NaN	1	1	Median	1.2774	1.2994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	200540000	68049000	132490000	0	0	0	73937000	19515000	54423000	126600000	48534000	78069000	0	0	0	32973	2517	31179	204127;204128	275902;275903	275902			2	
LNTQEIFDDWARK	1	Unmodified	1634.8053	0.80526994	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			78.296	77.576	3	0.0017857	68983	160511_QHF_FH_JSI10i_2	51.546	42.496			1.2191	1.5004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2191	1.5004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39962000	19143000	20818000	0	0	0	39962000	19143000	20818000	0	0	0	0	0	0	32974	2517	31180	204129	275904;275905	275905			2	
LNTSDFQK	1	Unmodified	951.46616	0.46616048	3978	Q96B36	AKT1S1	Proline-rich AKT1 substrate 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	27.367	26.81	2	0.014866	23908	160511_QHF_FH_JSI12i_1	60.436	26.698			0.94644	0.97629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94644	0.97629	NaN	1	1	Median	171220000	96106000	75110000	0	0	0	0	0	0	0	0	0	171220000	96106000	75110000	32975	3978	31181	204130;204131	275906;275907	275906			2	
LNTSIQVVLLSATMPTDVLEVTKK	2	Unmodified	2599.4506	0.45064034	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.419	89.698	3	1.012E-21	51750	160513_QHF_FH_JSI10Kac_6	119.32	105.86			0.80419	0.91922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80419	0.91922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59712000	28558000	31154000	0	0	0	59712000	28558000	31154000	0	0	0	0	0	0	32976	2519	31182	204132	275908	275908			1	
LNVAAELVQGTVPLEVPQVKPK	2	Unmodified	2328.3417	0.34168224	4925	Q9NQS1	AVEN	Cell death regulator Aven	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	95.93	95.938	4	0.00029672	83059	160511_QHF_FH_JSI12i_3	47.392	39.205			1.3293	1.3162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3293	1.3162	NaN	1	0	Median	27803000	16582000	11221000	0	0	0	0	0	0	0	0	0	27803000	16582000	11221000	32977	4925	31183	204133	275909	275909			1	
LNVAEVTQSEIAQK	1	Unmodified	1528.8097	0.80968662	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								5	3	3	3	60.02	59.24	2;3	1.3348E-09	53955	160511_QHF_FH_JSI12i_1	142.97	115.2			0.84848	0.8671	14.167	14	2	Median	0.88714	0.75867	17.37	5	2	Median	0.74556	0.86621	8.2811	3	0	Median	1.0267	0.99314	10.502	3	0	Plateau	0.84652	0.881	10.799	3	0	Plateau	833170000	442590000	390580000	225600000	108000000	117610000	223510000	127510000	96000000	219390000	114890000	104500000	164660000	92188000	72475000	32978	5028	31184	204134;204135;204136;204137;204138;204139;204140;204141;204142;204143;204144;204145;204146;204147	275910;275911;275912;275913;275914;275915;275916;275917;275918;275919;275920;275921;275922;275923;275924	275914			13	
LNVAPLAVFQMLK	1	Unmodified	1442.8319	0.83194239	3084	Q6NZ67;Q6P582	MZT2B;MZT2A	Mitotic-spindle organizing protein 2B;Mitotic-spindle organizing protein 2A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	102.14	102.06	2;3	1.2242E-05	82871	160511_QHF_FH_JSI9i_3	147.95	99.307			0.91149	0.92885	24.554	8	2	Median	1.2845	1.043	10.282	2	0	Median	0.63555	0.73489	51.995	2	1	Median	0.92488	0.85927	12.08	2	1	Median	0.8907	0.91107	1.6641	2	0	Median	1539400000	822680000	716700000	229570000	98420000	131150000	334630000	191230000	143400000	296000000	156190000	139810000	679190000	376840000	302350000	32979	3084	31185	204148;204149;204150;204151;204152;204153;204154;204155;204156	275925;275926;275927;275928;275929;275930;275931;275932;275933;275934;275935;275936	275930			12	
LNVCVSK	1	Unmodified	818.43202	0.43202358	1063;3788	P14866;Q8WVV9	HNRNPL;HNRNPLL	Heterogeneous nuclear ribonucleoprotein L;Heterogeneous nuclear ribonucleoprotein L-like	no	no	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	26.228	25.802	2	0.037612	22793	160511_QHF_FH_JSI10i_1	48.561	8.2929			0.69513	0.76724	60.865	2	0	Median	NaN	NaN	NaN	0	0	Median	0.42613	0.4989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1339	1.1799	NaN	1	0	Median	182180000	109440000	72743000	0	0	0	107180000	71873000	35305000	0	0	0	75004000	37566000	37437000	32980	1063;3788	31186	204157;204158	275937	275937			1	
LNVDFALIHK	1	Unmodified	1168.6604	0.66044361	1920	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	3	4	4	71.666	68.739	2;3	7.9326E-07	36515	160513_QHF_FH_JSI11Kac_6	103.34	83.58			0.91186	0.86269	15.479	14	0	Median	1.0217	0.84694	3.0269	3	0	Plateau	0.74414	0.9459	9.838	3	0	Plateau	0.93787	0.90385	26.149	4	0	Median	0.86173	0.88501	16.778	4	0	Median	1261300000	643090000	618210000	114420000	60298000	54120000	152570000	81474000	71098000	384750000	195240000	189510000	609560000	306080000	303480000	32981	1920	31187	204159;204160;204161;204162;204163;204164;204165;204166;204167;204168;204169;204170;204171;204172	275938;275939;275940;275941;275942;275943;275944;275945;275946;275947;275948;275949;275950;275951;275952;275953;275954;275955;275956;275957;275958;275959;275960;275961;275962;275963;275964;275965;275966;275967;275968;275969;275970	275950			32	
LNVEFALIHK	1	Unmodified	1182.6761	0.67609367	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	3	4	3	4	71.19	68.035	2;3	6.175E-06	60890	160511_QHF_FH_JSI11i_3	97.456	90.797			0.82355	0.8777	17.906	13	2	Median	0.7813	0.65554	33.114	3	1	Median	0.69539	0.78108	5.3347	3	0	Plateau	0.93143	0.89931	6.7461	3	0	Median	0.86486	0.93331	4.659	4	1	Median	534790000	298760000	236030000	67336000	40893000	26443000	86802000	53986000	32817000	73354000	38162000	35192000	307290000	165720000	141580000	32982	1008	31188	204173;204174;204175;204176;204177;204178;204179;204180;204181;204182;204183;204184;204185;204186	275971;275972;275973;275974;275975;275976;275977;275978;275979;275980;275981;275982;275983;275984;275985;275986;275987;275988;275989;275990	275973			19	
LNVFHWHLVDDPSFPYESFTFPELMR	0	Unmodified	3222.5273	0.52732753	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.402	90.681	4	4.1217E-43	52535	160513_QHF_FH_JSI10Kac_6	167.1	160.45			0.84392	1.0087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84392	1.0087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	603680000	321120000	282560000	0	0	0	603680000	321120000	282560000	0	0	0	0	0	0	32983	860	31189	204187	275991	275991			1	
LNVGAPDVTLR	0	Unmodified	1153.6455	0.64552182	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.699	57.355	2	0.0021406	49199	160511_QHF_FH_JSI12i_2	63.076	37.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32984	2286	31190	204188	275992	275992			1	
LNVGAPDVTLRGPSLQGDLAVSGDIK	1	Unmodified	2591.3919	0.39187991	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			86.206	85.622	3	0.036435	76105	160511_QHF_FH_JSI10i_2	25.604	17.707			1.0834	1.2414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0834	1.2414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5020700	4037700	983030	0	0	0	5020700	4037700	983030	0	0	0	0	0	0	32985	2286	31191	204189	275993	275993			1	
LNVHMNPPQVK	1	Unmodified	1275.6758	0.6757761	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	40.241	40.143	2;3	7.2564E-05	34156	160511_QHF_FH_JSI12i_3	59.84	45.876			0.88404	0.85993	0.0018024	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9305	0.85992	NaN	1	1	Median	0.83991	0.85994	NaN	1	0	Median	510980000	333310000	177670000	0	0	0	0	0	0	140280000	74338000	65944000	370700000	258970000	111730000	32986	1530;1750	31192	204190;204191;204192	275994;275995;275996;275997	275996			4	
LNVITVGPR	0	Unmodified	967.58147	0.581465	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		3	2	2	2	50.431	48.432	2	9.0998E-06	42799	160511_QHF_FH_JSI11i_3	111.95	76.067			1.0907	1.0477	15.065	9	0	Median	1.2877	1.0913	17.594	3	0	Median	0.8923	1.0467	8.2298	2	0	Median	1.0596	1.0387	1.2097	2	0	Median	0.88273	0.93787	24.39	2	0	Median	1280200000	647820000	632430000	183040000	76672000	106370000	265840000	144660000	121170000	355000000	182510000	172500000	476360000	243970000	232390000	32987	800	31193	204193;204194;204195;204196;204197;204198;204199;204200;204201	275998;275999;276000;276001;276002;276003;276004;276005;276006;276007;276008;276009;276010;276011;276012	275999			15	
LNVNATDSSSTSNHK	1	Unmodified	1573.7332	0.73322721	1396	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		12.834	12.834	3	0.0030256	10315	160511_QHF_FH_JSI11i_3	45.883	33.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32988	1396	31194	204202	276013	276013			1	
LNVSQLTINTAIVYMHR	0	Unmodified	1972.0564	0.056416027	428	O60563;O60583	CCNT1;CCNT2	Cyclin-T1;Cyclin-T2	yes	no	0	0	0	0		By MS/MS			16	0									1		1			84.823	79.156	3	0.00018336	44246	160513_QHF_FH_JSI10Kac_6	84.375	74.587			0.56839	0.66075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56839	0.66075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50544000	32203000	18341000	0	0	0	50544000	32203000	18341000	0	0	0	0	0	0	32989	428	31195	204203	276014;276015	276015			2	
LNVTEQEK	1	Unmodified	959.49238	0.49237523	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	5.84	4	5	2		1	4	3	1		4	4	6	6	19.108	14.709	2	0.00045611	13326	160511_QHF_FH_JSI11i_1	107.66	36.752			0.95396	0.99003	44.13	20	2	Median	1.1334	0.98681	18.042	4	0	Median	0.83416	0.99873	7.9964	4	0	Median	1.0259	1.0138	14.406	6	0	Median	0.73708	0.77555	76.931	6	2	Median	34519000000	17313000000	17206000000	9570900000	4274400000	5296500000	9814200000	5367100000	4447100000	7850300000	3714600000	4135700000	7284000000	3956900000	3327100000	32990	854	31196	204204;204205;204206;204207;204208;204209;204210;204211;204212;204213;204214;204215;204216;204217;204218;204219;204220;204221;204222;204223	276016;276017;276018;276019;276020;276021;276022;276023;276024;276025;276026;276027;276028;276029;276030;276031;276032;276033;276034;276035;276036;276037;276038;276039;276040;276041;276042;276043;276044;276045;276046;276047;276048;276049	276018			34	
LNVTEQEKIDK	2	Acetyl (K)	1357.7089	0.70890994	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	49.129	39.866	2	9.7052E-10	22116	160513_QHF_FH_JSI11Kac_3	131.17	78.383			0.66128	0.72306	34.946	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69152	0.82328	NaN	1	0	Median	0.42999	0.42566	NaN	1	0	Median	0.66128	0.72306	NaN	1	0	Median	71816000	45258000	26558000	0	0	0	21558000	12649000	8908900	31140000	22015000	9125800	19118000	10595000	8523000	32991	854	31197	204224;204225;204226	276050;276051;276052;276053;276054;276055	276051	523;525		6	
LNVVAFLNELPK	1	Unmodified	1355.7813	0.78128702	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	2	2	101.79	101.71	2	3.0418E-07	88486	160511_QHF_FH_JSI12i_3	147.37	100.17			1.1437	1.1531	28.882	8	3	Median	1.522	1.2593	47.693	2	1	Median	0.77517	0.91968	35.971	2	0	Median	1.2294	1.1773	6.9154	2	2	Median	1.1861	1.2689	29.239	2	0	Median	1093600000	496260000	597380000	76982000	30159000	46823000	223120000	121890000	101230000	338760000	142670000	196080000	454780000	201540000	253250000	32992	5257	31198	204227;204228;204229;204230;204231;204232;204233;204234	276056;276057;276058;276059;276060;276061;276062	276062			6	
LNVWDLSK	1	Unmodified	973.52328	0.52328142	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	3	2	3	67.977	67.231	2	0.0026709	61178	160511_QHF_FH_JSI11i_1	78.334	36.905			0.8895	1.0145	17.585	9	0	Median	1.2275	1.0226	NaN	1	0	Median	0.66675	0.77072	17.118	3	0	Median	1.0268	1.0259	23.037	2	0	Median	0.94426	1.042	18.946	3	0	Plateau	2902400000	1447200000	1455200000	386660000	174640000	212020000	699010000	392490000	306530000	1099800000	475880000	623890000	716990000	404190000	312800000	32993	2283;2741	31199	204235;204236;204237;204238;204239;204240;204241;204242;204243	276063;276064;276065;276066;276067;276068;276069;276070;276071;276072;276073;276074;276075;276076	276063			14	
LNVWVALLNLENMYGSQESLTK	1	Unmodified	2521.2887	0.28866039	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	99.72	91.527	3	6.8013E-22	51901	160513_QHF_FH_JSI11Kac_6	135.91	125.51			0.96739	1.0106	15.667	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65784	0.78091	NaN	1	0	Median	1.1028	1.0365	NaN	1	0	Median	0.96739	1.0106	NaN	1	0	Median	339450000	178500000	160950000	0	0	0	163540000	93436000	70107000	139240000	66765000	72480000	36665000	18303000	18361000	32994	2564	31200	204244;204245;204246	276077;276078	276077			2	
LNWILHFGLPPR	0	Unmodified	1461.8245	0.82448924	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.985	78.712	3	6.3959E-15	44826	160513_QHF_FH_JSI10Kac_6	133.07	111.02			1.2215	1.0913	45.929	4	0	Median	1.0422	0.88331	NaN	1	0	Median	0.67822	0.79302	NaN	1	0	Median	1.4318	1.3483	NaN	1	0	Median	2.0433	2.1752	NaN	1	0	Median	234070000	108140000	125930000	41793000	20558000	21235000	87588000	43773000	43815000	63725000	28174000	35550000	40964000	15637000	25326000	32995	5339	31201	204247;204248;204249;204250	276079;276080;276081;276082	276082			4	
LNWLSVDFNNWK	1	Unmodified	1534.7569	0.75686319	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.53		4	7						7	3	7	4	4	98.747	96.066	2;3	5.9222E-93	90152	160511_QHF_FH_JSI11i_3	254.97	227.86			1.068	1.0521	12.004	17	0	Median	1.3053	1.1115	8.1856	3	0	Plateau	0.88194	1.0372	16.623	6	0	Median	1.0997	1.0279	6.8619	4	0	Linear	1.0158	1.0356	12.419	4	0	Median	17864000000	8418500000	9445700000	2601800000	1009900000	1591900000	4475400000	2398600000	2076900000	4300600000	2072000000	2228600000	6486300000	2938000000	3548300000	32996	2642	31202	204251;204252;204253;204254;204255;204256;204257;204258;204259;204260;204261;204262;204263;204264;204265;204266;204267;204268	276083;276084;276085;276086;276087;276088;276089;276090;276091;276092;276093;276094;276095;276096;276097;276098;276099;276100;276101;276102;276103;276104;276105;276106;276107;276108;276109;276110;276111	276084			29	
LNWSAPR	0	Unmodified	842.43989	0.43988615	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	35.595	34.839	2	0.031087	29064	160511_QHF_FH_JSI10i_3	51.787	14.142			1.0583	1.0564	34.635	4	0	Median	1.5673	1.2493	NaN	1	0	Median	1.2895	1.4958	NaN	1	0	Median	0.75728	0.68767	NaN	1	0	Median	0.86858	0.89325	NaN	1	0	Median	212210000	111970000	100240000	49389000	23237000	26152000	58182000	32708000	25474000	39512000	22108000	17405000	65124000	33919000	31205000	32997	566	31203	204269;204270;204271;204272	276112	276112			1	
LNWTGTSK	1	Unmodified	905.46068	0.46068117	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	27.667	26.916	2	0.00093466	22436	160511_QHF_FH_JSI12i_3	96.253	58.015			0.95143	0.91303	37.833	8	0	Median	0.77385	0.65347	59.309	2	0	Median	0.78438	0.93148	33.707	2	0	Median	1.0236	1.0144	26.889	2	0	Median	0.9287	0.99646	45.791	2	0	Median	2063700000	1020200000	1043500000	400270000	208360000	191910000	432550000	239280000	193270000	502430000	216330000	286100000	728490000	356230000	372260000	32998	694	31204	204273;204274;204275;204276;204277;204278;204279;204280;204281	276113;276114;276115;276116;276117;276118;276119;276120;276121;276122;276123;276124;276125	276124			13	
LNYAQWYPIVVFLNPDSK	1	Unmodified	2166.115	0.11497676	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		97.879	90.005	2;3	9.4174E-23	53615	160513_QHF_FH_JSI10Kac_6	198.78	167.55			0.68793	0.64716	24.696	5	5	Median	0.68793	0.58863	NaN	1	1	Median	0.53895	0.63568	2.53	2	2	Median	1.004	0.95693	11.251	2	2	Median	NaN	NaN	NaN	0	0	Median	562270000	323040000	239230000	72445000	45345000	27100000	232680000	142990000	89689000	257150000	134700000	122440000	0	0	0	32999	2253	31205	204282;204283;204284;204285;204286	276126;276127;276128;276129;276130	276129			5	
LNYEENKEESLLEK	2	Unmodified	1736.8469	0.84685999	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	45.219	44.243	3	0.0093674	38023	160511_QHF_FH_JSI11i_2	41.967	31.77			0.97395	0.96919	7.3082	4	0	Median	1.1137	0.97345	NaN	1	0	Median	0.79103	0.96494	NaN	1	0	Median	0.94645	0.94783	NaN	1	0	Median	1.0022	1.1115	NaN	1	0	Median	219320000	118540000	100780000	28278000	13218000	15060000	62388000	37189000	25200000	73175000	38769000	34406000	55478000	29365000	26112000	33000	679	31206	204287;204288;204289;204290	276131	276131			1	
LNYGIPAIVK	1	Unmodified	1086.6437	0.64373091	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	69.393	68.594	2	0.00018193	60961	160511_QHF_FH_JSI10i_2	82.452	69.464			1.0147	1.0137	4.0299	5	0	Median	1.1167	0.95438	NaN	1	0	Median	0.82571	1.0282	NaN	1	0	Median	1.0354	1.0199	0.8674	2	0	Median	0.8414	0.94741	NaN	1	0	Median	502670000	250510000	252160000	96229000	43772000	52457000	88081000	41874000	46208000	206170000	108330000	97837000	112190000	56533000	55654000	33001	1065	31207	204291;204292;204293;204294;204295	276132;276133;276134;276135;276136;276137;276138;276139	276139			8	
LNYLDPR	0	Unmodified	889.46577	0.46576654	998	P11387;Q969P6	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	yes	no	0	0	0	0				By MS/MS	2	0		1											1	38.92	37.561	2	0.023935	32011	160511_QHF_FH_JSI12i_2	49.358	23.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33002	998	31208	204296	276140	276140			1	
LNYSDHDVIK	1	Unmodified	1202.5932	0.5931519	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.79		8						3		3	3	3	2	33.599	30.224	2;3	0.00037051	25520	160511_QHF_FH_JSI12i_2	76.943	58.161			0.96103	1.0105	20.108	11	2	Median	1.5273	1.3013	13.917	3	1	Median	0.74545	0.91966	15.037	3	1	Plateau	0.96103	0.977	4.987	3	0	Median	0.77119	0.84361	11.002	2	0	Median	1499600000	871500000	628110000	246210000	141120000	105090000	254960000	138250000	116710000	556220000	322220000	234000000	442230000	269910000	172320000	33003	4017	31209	204297;204298;204299;204300;204301;204302;204303;204304;204305;204306;204307	276141;276142;276143;276144;276145;276146;276147;276148;276149;276150	276142			9	
LNYSDHDVIKWVR	1	Acetyl (K)	1685.8526	0.85255449	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.649	65.294	3	0.0012183	35550	160513_QHF_FH_JSI11Kac_6	70.529	65.1			0.053872	0.051697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.053872	0.051697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30034000	29238000	795600	0	0	0	0	0	0	30034000	29238000	795600	0	0	0	33004	4017	31210	204308	276151	276151	3031		1	
LNYTYLISILK	1	Unmodified	1339.7751	0.77513901	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	93.324	85.317	2	8.3166E-05	47557	160513_QHF_FH_JSI9Kac_6	94.363	55.587			1.0441	1.2499	20.854	3	0	Plateau	1.2317	1.0695	NaN	1	0	Median	1.0441	1.2499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7861	0.82703	NaN	1	0	Median	957230000	424100000	533130000	283830000	128920000	154910000	435890000	178950000	256930000	0	0	0	237510000	116220000	121290000	33005	477	31211	204309;204310;204311	276152;276153	276152			2	
LNYVPLEK	1	Unmodified	974.54368	0.54368251	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	47.544	46.749	2	0.0064048	40193	160511_QHF_FH_JSI11i_2	71.501	41.316			0.97275	1.081	30.748	6	5	Median	1.3501	1.145	NaN	1	1	Median	0.73371	0.87177	51.247	2	1	Median	0.93695	0.93064	39.351	2	2	Median	0.91994	1.0206	NaN	1	1	Median	1217700000	606870000	610880000	163650000	74827000	88824000	338320000	179820000	158510000	509940000	247060000	262890000	205830000	105170000	100660000	33006	3216	31212	204312;204313;204314;204315;204316;204317	276154;276155;276156;276157;276158;276159;276160	276158			7	
LNYVQYYPIVVFFIPESRPALK	1	Unmodified	2655.4465	0.44648166	638	O95049	TJP3	Tight junction protein ZO-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	98.031	89.407	3	1.6036E-47	52959	160513_QHF_FH_JSI10Kac_6	180.13	160.24			0.83815	0.86792	12.911	5	0	Median	1.0363	0.87029	NaN	1	0	Median	0.9068	1.0525	NaN	1	0	Median	0.83815	0.79105	NaN	1	0	Median	0.76764	0.8069	10.309	2	0	Median	604750000	310990000	293760000	138400000	64097000	74298000	192530000	104370000	88166000	156000000	77907000	78090000	117820000	64614000	53207000	33007	638	31213	204318;204319;204320;204321;204322	276161;276162;276163;276164;276165	276164			5	
LNYYVGGEIVTIAHLDR	0	Unmodified	1932.0105	0.010511692	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1	1	2	2	1	85.443	84.202	3	8.1583E-07	74344	160511_QHF_FH_JSI12i_3	115.34	97.639			0.8189	0.88861	29.874	6	0	Median	1.034	0.90888	NaN	1	0	Median	0.62207	0.75725	31.929	2	0	Median	0.74473	0.73382	54.874	2	0	Median	0.85002	0.8688	NaN	1	0	Median	289230000	152050000	137180000	12885000	5929300	6955600	168740000	86421000	82320000	66184000	38324000	27860000	41419000	21373000	20046000	33008	1438	31214	204323;204324;204325;204326;204327;204328	276166;276167;276168;276169;276170;276171;276172;276173	276171			7	
LPAAGVGDMVMATVK	1	Unmodified	1458.7575	0.75745681	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							5	5	5	5	77.846	77.171	2;3	4.1685E-05	67825	160511_QHF_FH_JSI11i_2	91.307	83.002			0.90926	0.96004	7.4566	20	1	Median	1.1202	0.92493	6.1163	5	0	Median	0.86353	1.0291	6.8817	5	1	Median	0.90656	0.87842	10.452	5	0	Median	0.91197	0.95626	4.1576	5	0	Median	10091000000	5209300000	4881700000	1890900000	824290000	1066600000	2505200000	1465500000	1039700000	3242900000	1677600000	1565300000	2452100000	1241900000	1210200000	33009	2022	31215	204329;204330;204331;204332;204333;204334;204335;204336;204337;204338;204339;204340;204341;204342;204343;204344;204345;204346;204347;204348	276174;276175;276176;276177;276178;276179;276180;276181;276182;276183;276184;276185;276186;276187;276188;276189;276190;276191;276192;276193;276194;276195;276196;276197;276198;276199;276200;276201;276202;276203;276204;276205;276206;276207;276208;276209;276210;276211;276212;276213;276214;276215;276216	276205			43	
LPAAGVGDMVMATVKK	2	Unmodified	1586.8524	0.85241983	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	70.64	69.852	3	6.9345E-06	60403	160511_QHF_FH_JSI12i_3	102.78	89.944			1.085	1.0333	18.717	7	0	Median	1.3181	1.0979	23.85	2	0	Median	0.72719	0.86586	28.788	2	0	Median	1.0358	1.0031	4.1949	2	0	Median	1.092	1.1036	NaN	1	0	Median	1264500000	598440000	666060000	166220000	68872000	97350000	171930000	96718000	75208000	258680000	129850000	128840000	667670000	303000000	364660000	33010	2022	31216	204349;204350;204351;204352;204353;204354;204355	276217;276218;276219;276220;276221;276222;276223;276224;276225;276226;276227;276228	276228			11	
LPAEGPEPEADSQEQVHPK	1	Unmodified	2056.9702	0.97016302	531	O75459	PAGE1	P antigen family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.79	8	1				1	1			2	3	2	4	31.19	29.015	2;3	1.0678E-14	25943	160511_QHF_FH_JSI12i_1	153.86	127.5			0.94611	0.98393	7.7515	11	0	Median	1.1716	0.9532	4.4879	2	0	Median	0.83239	0.99066	12.286	3	0	Median	0.98876	0.961	5.4476	2	0	Median	0.95221	0.99586	5.5878	4	0	Median	2330200000	1130100000	1200000000	460220000	202600000	257610000	570430000	324170000	246260000	594330000	255380000	338960000	705200000	347990000	357210000	33011	531	31217	204356;204357;204358;204359;204360;204361;204362;204363;204364;204365;204366	276229;276230;276231;276232;276233;276234;276235;276236;276237;276238;276239;276240;276241;276242;276243;276244;276245;276246;276247;276248	276233			20	
LPAELLLLLSCPAFWAHFAR	0	Unmodified	2324.2504	0.25036481	2798	Q2T9J0	TYSND1	Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	100.34	91.762	3	1.831E-34	55468	160513_QHF_FH_JSI10Kac_6	162.15	149.67			1.235	1.4321	24.329	5	2	Median	1.3095	1.1398	32.283	2	2	Median	1.235	1.4544	NaN	1	0	Median	1.2298	1.1801	NaN	1	0	Median	1.6164	1.7132	NaN	1	0	Median	2180800000	994900000	1185900000	518100000	244760000	273340000	860620000	390350000	470270000	496610000	221320000	275300000	305470000	138470000	167000000	33012	2798	31218	204367;204368;204369;204370;204371	276249;276250;276251;276252;276253;276254	276254			6	
LPAELQELPGLSHQYWSAPSDK	1	Unmodified	2465.2227	0.22268931	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.703	3	7	4							1	4	4	5	86.635	86.12	3;4	4.1961E-14	74357	160511_QHF_FH_JSI12i_2	125.35	104.91			1.0062	0.98155	17.831	14	2	Median	1.0437	0.8916	NaN	1	0	Median	0.8716	1.051	25.579	4	1	Median	0.97902	1.0053	16.596	4	1	Median	1.0151	1.0336	13.844	5	0	Median	3988600000	1889000000	2099600000	503030000	207370000	295670000	674830000	299330000	375500000	1391100000	631160000	759980000	1419600000	751170000	668410000	33013	1294	31219	204372;204373;204374;204375;204376;204377;204378;204379;204380;204381;204382;204383;204384;204385	276255;276256;276257;276258;276259;276260;276261;276262;276263;276264;276265;276266;276267;276268;276269;276270;276271;276272;276273;276274;276275;276276;276277;276278;276279;276280;276281;276282	276260			28	
LPAESNEK	1	Unmodified	886.43961	0.43961137	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.7065	6.3543	2	0.044219	4316	160511_QHF_FH_JSI12i_1	38.55	4.5466			0.81913	0.85612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81913	0.85612	NaN	1	0	Median	164180000	84158000	80020000	0	0	0	0	0	0	0	0	0	164180000	84158000	80020000	33014	1201	31220	204386	276283	276283			1	
LPAHYQFLLDLGVR	0	Unmodified	1640.9039	0.90386178	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	84.918	82.056	3	0.0012173	75561	160511_QHF_FH_JSI12i_3	62.287	50.495			0.79192	0.88641	8.6032	2	1	Median	NaN	NaN	NaN	0	0	Median	0.69345	0.83409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90437	0.942	NaN	1	1	Median	103470000	61744000	41723000	0	0	0	65150000	40138000	25012000	0	0	0	38317000	21606000	16711000	33015	4473	31221	204387;204388	276284;276285	276284			1	
LPAIALDLLR	0	Unmodified	1093.6859	0.68593008	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	96.836	96.642	2	0.0064462	83556	160511_QHF_FH_JSI12i_3	52.716	29.288			1.1313	1.1145	14.931	5	0	Median	1.1313	0.95991	NaN	1	0	Median	0.93807	1.1145	NaN	1	0	Median	1.1734	1.1582	NaN	1	0	Median	1.0543	1.117	26.01	2	0	Median	311070000	158690000	152380000	51379000	30644000	20734000	50397000	25824000	24572000	48202000	25835000	22367000	161090000	76384000	84709000	33016	4361	31222	204389;204390;204391;204392;204393	276286;276287;276288;276289	276289			4	
LPAKTLKPEVR	2	Acetyl (K)	1292.7816	0.78162138	3511	Q8N2W9	PIAS4	E3 SUMO-protein ligase PIAS4	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	1	1	2	45.378	35.817	3	0.0077653	18900	160513_QHF_FH_JSI12Kac_5	58.674	48.064			0.95145	0.94183	8.1429	6	0	Median	1.0899	0.93143	9.3841	2	0	Median	0.72336	0.86182	NaN	1	0	Median	1.0867	1.0686	NaN	1	0	Median	0.87509	0.94183	1.7617	2	0	Median	162100000	82261000	79839000	38746000	17925000	20821000	43627000	24820000	18807000	25700000	11631000	14069000	54026000	27884000	26142000	33017	3511	31223	204394;204395;204396;204397;204398;204399	276290;276291;276292;276293	276290	2876		4	
LPALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSR	0	Unmodified	3438.8201	0.82007915	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104	98.282	4	1.352E-23	58178	160513_QHF_FH_JSI10Kac_6	112.08	101.28			0.82627	0.99331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82627	0.99331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143970000	80301000	63671000	0	0	0	143970000	80301000	63671000	0	0	0	0	0	0	33018	1283	31224	204400	276294	276294			1	
LPALFFLFK	1	Unmodified	1094.6528	0.65283903	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	3	3	99.336	94.055	2	0.0037608	85008	160511_QHF_FH_JSI10i_3	58.917	0			1.0557	0.97449	39.695	10	3	Median	1.0605	0.87105	8.858	2	0	Median	0.46899	0.54532	45.331	2	1	Median	1.0732	1.024	41.312	3	1	Median	1.1261	1.13	17.205	3	1	Median	1774700000	1091300000	683350000	145890000	70629000	75266000	136540000	96546000	39997000	940880000	580890000	359990000	551340000	343240000	208090000	33019	3454	31225	204401;204402;204403;204404;204405;204406;204407;204408;204409;204410	276295;276296;276297;276298;276299;276300;276301;276302;276303;276304;276305	276296			11	
LPANHPLLTGQR	0	Unmodified	1315.7361	0.73606817	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			5							3	1	1		25.779	24.778	3	7.8195E-05	19990	160511_QHF_FH_JSI9i_3	65.295	55.507			0.95959	1.209	25.155	4	0	Linear	1.3432	1.0973	37.381	2	0	Median	0.88158	1.0319	NaN	1	0	Median	0.88016	0.83571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	935710000	454970000	480740000	579920000	269110000	310810000	275440000	146300000	129140000	80346000	39556000	40790000	0	0	0	33020	1479	31226	204411;204412;204413;204414;204415	276306;276307;276308;276309	276308			4	
LPAPLPGLQDGEVEGHPVWALIYYCMR	0	Unmodified	3080.5252	0.52521904	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		96.348	87.115	3	3.33E-29	49478	160513_QHF_FH_JSI11Kac_6	132.35	123.14			1.0129	0.90361	4.0135	2	0	Median	1.0994	0.92962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93318	0.87833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	508410000	214690000	293730000	162650000	73218000	89430000	0	0	0	345770000	141470000	204300000	0	0	0	33021	3503	31227	204416;204417	276310;276311	276310			2	
LPASHATWMGK	1	Unmodified	1197.5965	0.59646314	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	28.409	27.595	3	1.6865E-05	22520	160511_QHF_FH_JSI9i_3	91.937	77.907			1.4647	1.3584	54.775	5	2	Median	1.7507	1.4364	NaN	1	0	Median	1.4167	1.6159	107.52	2	0	Median	1.4647	1.3584	NaN	1	1	Median	1.2664	1.2759	NaN	1	1	Median	470270000	214310000	255970000	88335000	27108000	61228000	158290000	76295000	81995000	140630000	67023000	73607000	83019000	43881000	39138000	33022	1022	31228	204418;204419;204420;204421;204422	276312;276313;276314;276315;276316	276315			5	
LPASHATWMGKIHSK	2	Acetyl (K)	1704.877	0.8769951	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.131	42.406	4	0.0017009	22945	160513_QHF_FH_JSI11Kac_6	63.134	52.5			0.12464	0.12135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12464	0.12135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11855000	10830000	1024800	0	0	0	0	0	0	11855000	10830000	1024800	0	0	0	33023	1022	31229	204423	276317	276317	838		1	
LPATAAEPEAAVISNGEH	0	Unmodified	1775.869	0.86899241	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.629	51.961	2	3.1581E-07	47087	160511_QHF_FH_JSI11i_1	122.64	113.91			1.124	1.134	2.9212	4	0	Median	1.3947	1.1536	NaN	1	0	Median	0.93926	1.1147	NaN	1	0	Median	1.1285	1.0972	NaN	1	0	Median	1.1195	1.1682	NaN	1	0	Median	278880000	135190000	143690000	53746000	20788000	32957000	74378000	41614000	32764000	74845000	35667000	39178000	75909000	37117000	38793000	33024	2170	31230	204424;204425;204426;204427	276318;276319;276320;276321;276322;276323;276324;276325	276320			8	
LPATEKPVLLSK	2	Unmodified	1294.786	0.78603805	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	41.479	40.614	3	0.0047904	34371	160511_QHF_FH_JSI12i_3	52.555	44.451			0.79865	0.85924	27.434	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61058	0.70773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0446	1.0432	NaN	1	1	Median	427250000	200030000	227210000	0	0	0	69667000	40268000	29399000	0	0	0	357580000	159770000	197810000	33025	5633	31231	204428;204429;204430;204431	276326;276327;276328;276329	276328			4	
LPAVSSVACGASVGYAVTK	1	Unmodified	1835.9451	0.94513424	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			66.104	65.771	2;3	6.5072E-05	59605	160511_QHF_FH_JSI10i_1	60.062	49.275			0.90641	1.0207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90641	1.0207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43243000	25460000	17783000	0	0	0	43243000	25460000	17783000	0	0	0	0	0	0	33026	1145	31232	204432;204433	276330;276331	276330			2	
LPAVVTADLR	0	Unmodified	1053.6182	0.61824444	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	54.685	54.083	2	0.00027881	47565	160511_QHF_FH_JSI9i_2	79.474	31.625			0.91839	0.90409	12.643	5	0	Median	1.2434	1.024	NaN	1	0	Median	0.73224	0.87378	NaN	1	0	Median	0.93298	0.94469	6.2123	2	0	Median	0.72865	0.74091	NaN	1	0	Median	1692400000	809310000	883050000	397160000	162310000	234850000	184540000	65284000	119260000	997550000	516900000	480650000	113100000	64813000	48289000	33027	1473	31233	204434;204435;204436;204437;204438	276332;276333;276334;276335	276334			4	
LPAYLTIQMVR	0	Unmodified	1303.7322	0.73222834	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	79.844	75.507	2	0.035106	39344	160513_QHF_FH_JSI11Kac_6	42.312	28.721			0.90404	0.92025	11.256	7	0	Median	1.3352	1.115	4.4703	2	0	Median	0.78834	0.88429	NaN	1	0	Median	0.92358	0.87912	6.4663	2	0	Median	0.90298	0.94014	4.3634	2	0	Median	1415000000	662740000	752290000	373920000	142670000	231250000	132580000	82795000	49786000	388000000	190440000	197560000	520540000	246840000	273690000	33028	1824	31234	204439;204440;204441;204442;204443;204444;204445	276336;276337	276336			2	
LPAYLTIQMVR	0	Oxidation (M)	1319.7271	0.72714296	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	72.813	64.053	2	0.0016625	33465	160513_QHF_FH_JSI12Kac_6	72.879	57.264			1.013	0.99726	4.6411	4	0	Median	1.1722	1.0141	NaN	1	0	Median	0.81681	0.95371	NaN	1	0	Median	1.1021	1.0623	NaN	1	0	Median	0.93108	0.98067	NaN	1	0	Median	338630000	174660000	163970000	85070000	41222000	43848000	80438000	44431000	36007000	104910000	53376000	51538000	68210000	35636000	32574000	33029	1824	31234	204446;204447;204448;204449	276338;276339;276340	276339		1507	3	
LPCYFENLLSHFLPQK	1	Unmodified	2005.0132	0.013154229	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.12	102.13	3	6.974E-06	88873	160511_QHF_FH_JSI12i_3	84.874	67.385			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33030	4844	31235	204450	276341	276341			1	
LPDAYER	0	Unmodified	862.41848	0.418482	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.98	3	4				1	1			1	2	3	3	18.963	16.949	2	0.019993	14566	160511_QHF_FH_JSI10i_1	57.463	9.2899			0.90833	0.94567	5.0367	9	0	Median	1.0585	0.89807	NaN	1	0	Median	0.84594	1.0042	1.0086	2	0	Median	0.95434	0.92395	1.3417	3	0	Plateau	0.884	0.99141	6.7182	3	0	Median	4269200000	2131000000	2138200000	373770000	178320000	195440000	1457600000	761910000	695700000	2135200000	1025000000	1110200000	302610000	165780000	136830000	33031	1000	31236	204451;204452;204453;204454;204455;204456;204457;204458;204459	276342;276343;276344	276343			3	
LPDDQIPK	1	Unmodified	924.49165	0.49164694	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.639	28.049	2	0.021912	25006	160511_QHF_FH_JSI12i_1	44.447	24.165			0.76273	0.88733	4.4313	4	0	Linear	1.1539	0.9399	NaN	1	0	Median	0.7701	0.89426	NaN	1	0	Median	0.90936	0.88046	NaN	1	0	Median	0.80632	0.84428	NaN	1	0	Median	1149600000	621890000	527740000	224440000	111060000	113390000	332680000	180370000	152310000	278930000	139370000	139560000	313570000	191090000	122480000	33032	2176	31237	204460;204461;204462;204463	276345;276346	276346			2	
LPDGSSFTNQFPSDAPLEEAR	0	Unmodified	2277.055	0.054955282	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	6									2	1	1	2	76.968	76.413	2;3	1.1858E-12	67953	160511_QHF_FH_JSI9i_1	148.03	119.7			1.2177	1.1698	11.053	6	0	Median	1.2373	1.0201	4.1873	2	0	Median	0.93517	1.1089	NaN	1	0	Median	1.331	1.2367	NaN	1	0	Median	1.1957	1.2764	4.7658	2	0	Median	367420000	170540000	196870000	98887000	45627000	53260000	68040000	36091000	31949000	68961000	28064000	40897000	131530000	60762000	70766000	33033	3848	31238	204464;204465;204466;204467;204468;204469	276347;276348;276349;276350;276351	276351			5	
LPDGYEFK	1	Unmodified	967.4651	0.46509784	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.42	4	2	1				1	1		2	4	2	1	43.42	40.405	2	0.0066395	36010	160511_QHF_FH_JSI9i_1	61.962	51.089			1.034	1.0681	13.199	9	0	Median	1.2928	1.0681	7.5152	2	0	Median	0.86278	1.1832	16.367	4	0	Linear	1.0429	1.0246	0.29716	2	0	Median	1.0017	1.0681	NaN	1	0	Median	8924300000	4062100000	4862200000	1856400000	842690000	1013700000	2797700000	1284000000	1513700000	2205700000	1030800000	1174900000	2064500000	904550000	1159900000	33034	926	31239	204470;204471;204472;204473;204474;204475;204476;204477;204478	276352;276353;276354;276355;276356;276357;276358;276359;276360;276361;276362;276363;276364;276365;276366;276367;276368;276369;276370;276371	276368			20	
LPDHLIK	1	Unmodified	834.49634	0.49633839	1478	P38571	LIPA	Lysosomal acid lipase/cholesteryl ester hydrolase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		25.55	25.191	3	0.056456	21018	160511_QHF_FH_JSI11i_2	23.955	9.1796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14129000	0	14129000	0	0	0	0	0	0	14129000	0	14129000	0	0	0	33035	1478	31240	204479	276372	276372			1	
LPDIFEAQIAGLR	0	Unmodified	1441.7929	0.79291434	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.493	2	9	1							3	3	3	3	95.006	94.73	2;3	2.1272E-05	83013	160511_QHF_FH_JSI11i_2	77.593	70.554		+	0.96739	0.96767	16.069	12	1	Median	1.1014	0.87383	4.1763	3	1	Plateau	0.6991	0.85165	23.51	3	0	Median	0.97575	0.99321	19.441	3	0	Median	0.9591	1.0518	6.5119	3	0	Median	1499600000	790000000	709580000	278490000	136590000	141900000	274990000	161800000	113190000	519360000	256060000	263300000	426750000	235550000	191190000	33036	53;71	31241	204480;204481;204482;204483;204484;204485;204486;204487;204488;204489;204490;204491	276373;276374;276375;276376;276377;276378;276379;276380;276381;276382;276383;276384;276385;276386;276387;276388;276389;276390;276391;276392;276393;276394	276386			22	
LPDLIIFLHTLNNIFEPHVAVR	0	Unmodified	2570.4373	0.43731396	5566	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									9	3	3	1	2	99.585	91.481	3;4	7.1168E-38	54864	160513_QHF_FH_JSI10Kac_6	171.39	156.26			0.90399	0.94584	41.198	9	5	Median	1.2487	1.0726	17.122	3	2	Median	0.90399	1.0691	23.095	3	2	Median	0.49493	0.46721	NaN	1	0	Median	0.61081	0.63873	55.52	2	1	Median	18926000000	9946300000	8979400000	5051100000	2364800000	2686300000	11012000000	5408600000	5603600000	154830000	101350000	53475000	2707600000	2071500000	636080000	33037	5566	31242	204492;204493;204494;204495;204496;204497;204498;204499;204500	276395;276396;276397;276398;276399;276400;276401;276402;276403;276404	276402			10	
LPDLSLDNMIGQSAIAGEEHPR	0	Unmodified	2362.1587	0.15870885	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	87.508	86.968	3	1.3991E-07	76499	160511_QHF_FH_JSI11i_2	83.905	75.515			1.0386	1.1042	7.0951	5	1	Median	1.284	1.1125	NaN	1	1	Median	0.91249	1.1042	NaN	1	0	Median	1.2091	1.2707	NaN	1	0	Median	1.0347	1.075	2.6416	2	0	Median	180530000	94667000	85865000	42738000	19311000	23427000	43204000	26039000	17165000	39453000	21179000	18274000	55136000	28138000	26998000	33038	4564	31243	204501;204502;204503;204504;204505	276405;276406;276407;276408;276409;276410;276411	276408			7	
LPDLSPVENK	1	Unmodified	1110.5921	0.59208927	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.492	45.815	2	0.0068135	40657	160511_QHF_FH_JSI9i_1	52.255	42.344			0.83926	0.78055	18.483	4	1	Median	0.90328	0.73719	NaN	1	0	Median	0.82889	0.9652	NaN	1	0	Median	0.84976	0.82647	NaN	1	0	Median	0.60567	0.62289	NaN	1	1	Median	548850000	305270000	243580000	131230000	70142000	61087000	136920000	73434000	63488000	146440000	79080000	67365000	134250000	82613000	51638000	33039	5646	31244	204506;204507;204508;204509	276412;276413;276414;276415	276415			4	
LPDMLNAEIVLGNVQNAK	1	Unmodified	1938.0244	0.024447197	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	99.137	98.984	2;3	1.3724E-05	89539	160511_QHF_FH_JSI10i_1	62.709	52.652			0.9131	0.98264	13.902	6	4	Median	0.85336	0.71667	NaN	1	1	Median	0.92123	1.0435	NaN	1	0	Median	1.0183	1.0062	2.7831	2	2	Median	0.90376	0.97188	0.99596	2	1	Median	171810000	86592000	85217000	22691000	12234000	10457000	29965000	16153000	13812000	63264000	27699000	35565000	55889000	30506000	25383000	33040	552	31245	204510;204511;204512;204513;204514;204515	276416;276417;276418;276419;276420;276421;276422	276419			7	
LPDMSVK	1	Unmodified	788.41023	0.4102255	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	30.171	29.45	2	0.039053	26383	160511_QHF_FH_JSI12i_1	47.849	23.876			1.1323	1.2012	47.52	3	0	Plateau	0.65059	0.52662	NaN	1	0	Median	1.0101	1.1975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1492	1.2012	NaN	1	0	Median	290580000	143050000	147530000	42052000	21981000	20070000	111640000	63940000	47698000	0	0	0	136890000	57128000	79763000	33041	2286	31246	204516;204517;204518	276423	276423			1	
LPDNVTFEEGALIEPLSVGIHACR	0	Unmodified	2636.3268	0.32683681	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	99.626	99.463	3	7.9637E-09	87859	160511_QHF_FH_JSI10i_2	75.184	71.722			0.78448	1.0003	17.973	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93398	1.1216	NaN	1	0	Median	0.78391	0.78854	NaN	1	0	Median	0.95765	1.0003	NaN	1	0	Median	63595000	33522000	30073000	0	0	0	18305000	8014700	10290000	28496000	15588000	12907000	16794000	9918400	6875800	33042	2160	31247	204519;204520;204521;204522	276424;276425;276426;276427;276428;276429	276428			6	
LPDNYTQDTWRK	1	Unmodified	1535.7369	0.73685603	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	3	0			3								1	1	1	35.809	35.281	3	0.0077134	30026	160511_QHF_FH_JSI12i_3	30.567	18.006			0.94399	0.88304	27.852	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96205	1.1019	NaN	1	0	Median	0.94399	0.88304	NaN	1	0	Median	0.61909	0.63358	NaN	1	0	Median	318650000	175160000	143490000	0	0	0	46790000	21711000	25079000	160220000	76722000	83498000	111640000	76726000	34917000	33043	2456	31248	204523;204524;204525	276430	276430			1	
LPDVCYSWWVLASLK	1	Unmodified	1835.928	0.92802762	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.101	87.695	2	0.037801	49993	160513_QHF_FH_JSI11Kac_6	56.29	48.92			1.2952	1.2213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2952	1.2213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75675000	28787000	46888000	0	0	0	0	0	0	75675000	28787000	46888000	0	0	0	33044	1803	31249	204526	276431	276431			1	
LPDVYGVFQFK	1	Unmodified	1311.6863	0.68632401	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2		1	2	2	89.793	85.693	2	0.0022187	78743	160511_QHF_FH_JSI12i_2	67.563	49.699			0.89597	0.86047	34.189	5	3	Median	NaN	NaN	NaN	0	0	Median	0.37561	0.46196	NaN	1	1	Median	0.92943	0.91585	8.821	2	1	Median	0.76765	0.84162	35.038	2	1	Median	560220000	322520000	237700000	0	0	0	132780000	94801000	37982000	275440000	142510000	132930000	152010000	85215000	66791000	33045	1486	31250	204527;204528;204529;204530;204531	276432;276433;276434;276435;276436;276437	276432			6	
LPDYKPYPMYPATTSLVNVVPK	2	Unmodified	2492.3025	0.30251954	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	90.163	89.527	3	0.0024008	79371	160511_QHF_FH_JSI10i_2	44.632	36.92			0.77635	0.8854	20.86	5	4	Median	0.67412	0.58509	NaN	1	1	Median	0.62103	0.75835	NaN	1	1	Median	0.89267	0.88921	NaN	1	0	Median	0.83203	0.94414	9.0848	2	2	Median	217890000	127510000	90386000	33932000	21239000	12693000	62328000	41855000	20474000	51888000	27139000	24749000	69745000	37274000	32471000	33046	2151	31251	204532;204533;204534;204535;204536	276438;276439;276440;276441;276442;276443	276443			6	
LPEAADFGTTSSLHFVHMR	0	Oxidation (M)	2131.0157	0.015673424	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	2	1	1	63.905	60.252	4	0.0002255	32939	160513_QHF_FH_JSI10Kac_6	62.765	53.946			0.82183	0.93385	26.064	5	0	Median	1.3718	1.1674	NaN	1	0	Median	0.66232	0.77383	34.339	2	0	Median	0.98941	0.93385	NaN	1	0	Median	0.71814	0.72049	NaN	1	0	Median	208210000	107100000	101110000	25841000	9053500	16787000	51822000	32345000	19477000	75884000	32414000	43470000	54660000	33289000	21372000	33047	2314	31252	204537;204538;204539;204540;204541	276444;276445;276446;276447	276447		1909	4	
LPEAADFGTTSSLHFVHMR	0	Unmodified	2115.0208	0.020758802	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	2	4	3	2	71.757	68.489	3;4	1.1462E-09	36728	160513_QHF_FH_JSI10Kac_6	111.77	102.35			1.0292	1.0153	9.4707	11	0	Median	1.083	0.91008	1.5482	2	0	Median	0.88773	1.0419	6.3755	4	0	Median	1.1757	1.089	11.589	3	0	Median	0.98212	1.0134	9.6225	2	0	Median	1633400000	818410000	814960000	57329000	28142000	29187000	588530000	333690000	254840000	548300000	229410000	318890000	439200000	227160000	212040000	33048	2314	31252	204542;204543;204544;204545;204546;204547;204548;204549;204550;204551;204552	276448;276449;276450;276451;276452;276453;276454;276455;276456;276457;276458;276459;276460;276461;276462	276460			14	
LPEDPLLSGLLDSPALK	1	Unmodified	1776.9873	0.98731663	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	8	9								4	4	5	4	101.77	101.66	2;3	9.5688E-23	89378	160511_QHF_FH_JSI11i_2	133.25	121.81			0.93819	0.96007	13.008	17	2	Median	1.3753	1.1398	5.4889	4	0	Median	0.9497	1.0806	5.7696	4	0	Linear	0.90046	0.9029	2.8251	5	2	Median	0.84016	0.92279	5.6691	4	0	Median	11701000000	5967900000	5732800000	1806200000	751700000	1054500000	3233500000	1667600000	1565900000	4251700000	2210300000	2041400000	2409300000	1338200000	1071100000	33049	1650	31253	204553;204554;204555;204556;204557;204558;204559;204560;204561;204562;204563;204564;204565;204566;204567;204568;204569	276463;276464;276465;276466;276467;276468;276469;276470;276471;276472;276473;276474;276475;276476;276477;276478;276479;276480;276481;276482;276483;276484;276485;276486;276487;276488;276489;276490	276484			28	
LPEEMGLLQGSSGDK	1	Unmodified	1559.7501	0.75012283	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		58.703	57.931	2	0.010623	52472	160511_QHF_FH_JSI11i_1	46.592	25.722			0.61152	0.54956	28.734	2	0	Median	0.53743	0.44851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69583	0.67336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	164330000	110110000	54222000	85887000	57558000	28328000	0	0	0	78441000	52547000	25894000	0	0	0	33050	1554	31254	204570;204571	276491	276491			1	
LPEEVATPTTDEEK	1	Unmodified	1557.741	0.74099793	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		36.056	35.313	2	0.0077257	31792	160511_QHF_FH_JSI11i_1	60.255	40.493			1.4692	1.4194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4692	1.4194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27565000	7453600	20112000	8315400	0	8315400	0	0	0	19250000	7453600	11797000	0	0	0	33051	708	31255	204572;204573	276492;276493	276492			2	
LPEGDLGK	1	Unmodified	827.43888	0.43888309	2060	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	20.775	20.129	2	0.036415	16910	160511_QHF_FH_JSI9i_1	40.268	18.137			0.77515	0.81392	10.127	3	0	Median	1.1424	0.94757	NaN	1	0	Median	0.67377	0.78211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77515	0.81392	NaN	1	0	Median	520370000	291520000	228850000	192320000	94799000	97520000	168430000	103270000	65163000	0	0	0	159620000	93452000	66167000	33052	2060	31256	204574;204575;204576	276494;276495;276496	276496			3	
LPEHPEGGEPEDDEAPAK	1	Unmodified	1915.8436	0.84356552	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	22.947	22.413	3	0.0036451	19020	160511_QHF_FH_JSI9i_1	41.513	31.174			1.0015	1.0121	4.9689	4	0	Median	1.1991	0.9716	NaN	1	0	Median	0.92864	1.0867	NaN	1	0	Median	1.0092	0.99074	NaN	1	0	Median	0.9938	1.0338	NaN	1	0	Median	195740000	97515000	98230000	42617000	17943000	24674000	47523000	25242000	22281000	41783000	21780000	20002000	63823000	32549000	31273000	33053	5095	31257	204577;204578;204579;204580	276497;276498;276499	276499			2	
LPELFETGR	0	Unmodified	1060.5553	0.55530983	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.546	58.043	2	0.052371	50395	160511_QHF_FH_JSI11i_2	43.769	24.066			1.2843	1.3126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2843	1.3126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	278330000	101040000	177300000	0	0	0	0	0	0	278330000	101040000	177300000	0	0	0	33054	2082	31258	204581	276500	276500			1	
LPELWALLNFLLPTIFK	1	Unmodified	2027.186	0.18595686	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0		By MS/MS			16	0									4		4			106.23	100.51	2;3	1.7351E-06	59589	160513_QHF_FH_JSI10Kac_6	160.31	128.25			5.2506	6.2964	24.922	3	3	Plateau	NaN	NaN	NaN	0	0	Median	5.2506	6.2964	24.922	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	325640000	110680000	214950000	0	0	0	325640000	110680000	214950000	0	0	0	0	0	0	33055	1736;1737	31259	204582;204583;204584;204585	276501;276502;276503;276504	276504			4	
LPENYTDETWQK	1	Unmodified	1522.694	0.69398816	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	1	3	3	41.511	40.824	2;3	0.00021388	39913	160511_QHF_FH_JSI11i_1	91.855	74.342			1.0031	1.0322	15.877	9	0	Median	1.2354	1.029	7.2614	2	0	Median	0.91307	1.0532	NaN	1	0	Median	1.0166	1.0322	3.205	3	0	Plateau	0.68979	0.74254	21.906	3	0	Median	1871600000	997960000	873630000	447460000	238990000	208470000	116230000	61499000	54727000	760790000	392750000	368030000	547120000	304710000	242410000	33056	2457	31260	204586;204587;204588;204589;204590;204591;204592;204593;204594	276505;276506;276507;276508	276505			4	
LPESNQTLLRK	1	Unmodified	1297.7354	0.73539946	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		26.848	26.848	3	0.023998	22298	160511_QHF_FH_JSI10i_3	29.807	1.0014			0.67964	0.62913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67964	0.62913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21348000	13096000	8252100	0	0	0	0	0	0	21348000	13096000	8252100	0	0	0	33057	4424	31261	204595;204596	276509;276510	276510			2	
LPETNLFETEETRK	1	Unmodified	1705.8523	0.85227972	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	2	4	2	50.644	50.09	2;3	2.1248E-05	42744	160511_QHF_FH_JSI12i_3	113.53	95.61			0.93562	0.89736	11.587	9	0	Median	1.0767	0.89736	NaN	1	0	Median	0.6882	0.82653	11.123	2	0	Median	0.97519	0.98384	12.677	4	0	Median	0.89007	0.94786	10.066	2	0	Median	4769800000	2491000000	2278800000	596650000	316430000	280220000	716850000	362960000	353890000	1752600000	868790000	883860000	1703600000	942770000	760850000	33058	2614	31262	204597;204598;204599;204600;204601;204602;204603;204604;204605	276511;276512;276513;276514;276515;276516;276517;276518;276519;276520;276521;276522;276523;276524;276525;276526;276527;276528;276529;276530;276531;276532;276533	276533			23	
LPETVHTAVR	0	Unmodified	1121.6193	0.61930707	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.4	0.49		3	2									2	3	19.456	18.949	3	0.0016647	15430	160511_QHF_FH_JSI12i_3	49.189	32.167			0.93363	1.017	30.606	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1904	1.1284	7.7141	2	1	Median	0.83375	0.87941	32.633	3	1	Median	229300000	105000000	124300000	0	0	0	0	0	0	102140000	35198000	66938000	127160000	69798000	57363000	33059	5666	31263	204606;204607;204608;204609;204610	276534;276535;276536	276536			3	
LPEVEVPQHL	0	Unmodified	1159.6237	0.62372375	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.143	64.529	2	0.00081219	58697	160511_QHF_FH_JSI12i_1	69.628	37.273			0.81311	0.81686	9.3342	4	0	Median	1.0635	0.8738	NaN	1	0	Median	0.61958	0.73372	NaN	1	0	Median	0.91231	0.88138	NaN	1	0	Median	0.7247	0.76363	NaN	1	0	Median	814360000	444320000	370040000	187010000	80660000	106350000	191460000	121180000	70278000	212350000	106030000	106320000	223550000	136450000	87101000	33060	2195	31264	204611;204612;204613;204614	276537;276538;276539	276538			3	
LPEVQQATK	1	Unmodified	1012.5553	0.55530983	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	20.82	19.995	2	0.0073653	17377	160511_QHF_FH_JSI12i_1	53.493	24.981			0.94726	0.88526	8.8495	2	0	Median	1.0031	0.83156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89451	0.94243	NaN	1	0	Median	417450000	208980000	208470000	193200000	100120000	93080000	0	0	0	0	0	0	224250000	108860000	115390000	33061	2409	31265	204615;204616	276540;276541	276540			2	
LPFAAAQIGNSFR	0	Unmodified	1390.7357	0.73573382	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			73.079	71.616	2;3	0.001032	60065	160511_QHF_FH_JSI10i_3	66.056	44.592			1.023	0.99256	20.994	2	1	Median	1.3702	1.1514	NaN	1	1	Median	0.76368	0.85563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115530000	63824000	51709000	12230000	6482000	5748000	103300000	57342000	45961000	0	0	0	0	0	0	33062	1519	31266	204617;204618	276542;276543	276542			2	
LPFCAMGVSSVIHPK	1	Unmodified	1641.8371	0.83710412	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	72.039	71.234	3	1.8188E-05	59851	160511_QHF_FH_JSI10i_3	113.72	104.9			0.83633	0.86896	38.758	4	0	Median	0.79744	0.67045	NaN	1	0	Median	0.7834	0.93065	NaN	1	0	Median	0.87711	0.81135	NaN	1	0	Median	1.6354	1.6489	NaN	1	0	Median	325050000	145790000	179260000	34622000	18110000	16512000	55590000	30940000	24650000	114230000	57505000	56724000	120610000	39235000	81375000	33063	1456	31267	204619;204620;204621;204622	276544;276545;276546	276545			3	
LPFHLIFFGTAQNFWK	1	Unmodified	1965.0301	0.030124922	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	95.598	87.003	2;3	8.0983E-34	49010	160513_QHF_FH_JSI11Kac_6	173.68	146.03			1.3202	1.3442	27.959	5	2	Median	1.0308	0.87506	NaN	1	0	Median	0.70279	0.82787	NaN	1	0	Median	1.4885	1.4233	8.093	2	1	Median	1.3202	1.3772	NaN	1	1	Median	3501800000	1549400000	1952400000	705260000	379840000	325420000	857130000	450080000	407060000	1281200000	435180000	846030000	658240000	284340000	373900000	33064	1716	31268	204623;204624;204625;204626;204627	276547;276548;276549;276550;276551;276552	276547			6	
LPFIVVMNK	1	Unmodified	1059.6151	0.61507332	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		81.245	71.931	2	0.033749	39553	160513_QHF_FH_JSI11Kac_6	45.081	21.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33065	4861	31269	204628	276553	276553			1	
LPFLAHALYVQAPTVTIEGFLQALSLAVDK	1	Unmodified	3224.7849	0.78492242	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		102.75	95.295	3;4	9.6759E-93	57306	160513_QHF_FH_JSI10Kac_6	216.81	205.43			0.98104	1.0039	39.838	4	1	Median	0.79211	0.6847	12.919	2	1	Median	1.1324	1.3485	0.53991	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2064700000	1162400000	902300000	727020000	435650000	291370000	1337700000	726800000	610940000	0	0	0	0	0	0	33066	2692	31270	204629;204630;204631;204632;204633	276554;276555;276556;276557;276558;276559;276560	276558			7	
LPFLVMIIK	1	Unmodified	1072.6719	0.67185992	5713	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	98.536	94.299	2	0.001901	91057	160511_QHF_FH_JSI11i_3	67.032	52.875			1.0531	1.0075	15.007	8	0	Median	1.0814	0.89666	16.827	2	0	Median	0.9488	1.1227	27.706	2	0	Median	1.0875	1.0399	1.1263	2	0	Median	0.98182	1.0034	0.22836	2	0	Median	3143400000	1520900000	1622500000	650940000	300390000	350550000	852120000	410430000	441690000	959720000	474650000	485070000	680610000	335410000	345190000	33067	5713	31271	204634;204635;204636;204637;204638;204639;204640;204641	276561;276562;276563;276564;276565;276566;276567;276568	276561			8	
LPFLVMIIK	1	Oxidation (M)	1088.6668	0.66677454	5713	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	89.845	80.366	2	0.032565	44876	160513_QHF_FH_JSI11Kac_6	41.227	41.227			1.0985	1.0369	38.511	4	0	Median	1.4481	1.2002	37.212	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65279	0.62756	NaN	1	0	Median	1.0938	1.1653	NaN	1	0	Median	355060000	178300000	176760000	137850000	58867000	78981000	0	0	0	117620000	69728000	47892000	99594000	49704000	49891000	33068	5713	31271	204642;204643;204644;204645	276569	276569			1	
LPFPIIDDR	0	Unmodified	1084.5917	0.59169534	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	5.88	4	4	4				1	4		4	4	4	5	78.085	74.513	2	8.6075E-06	66715	160511_QHF_FH_JSI11i_2	112.17	77.363			0.93208	0.95581	12.034	17	0	Median	1.1695	0.9859	21.043	4	0	Median	0.78022	0.93554	11.942	4	0	Median	0.95121	0.95561	9.4637	4	0	Median	0.89405	0.98936	8.1019	5	0	Median	10428000000	5334900000	5092700000	1812500000	830250000	982220000	2524100000	1394500000	1129600000	3849200000	1890900000	1958300000	2241900000	1219200000	1022700000	33069	1333	31272	204646;204647;204648;204649;204650;204651;204652;204653;204654;204655;204656;204657;204658;204659;204660;204661;204662	276570;276571;276572;276573;276574;276575;276576;276577;276578;276579;276580;276581;276582;276583;276584;276585;276586;276587;276588;276589;276590;276591;276592;276593;276594;276595;276596;276597;276598;276599;276600	276592			31	
LPFPIIDDRNR	0	Unmodified	1354.7357	0.73573382	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	2	1	1	63.883	62.929	3	2.3484E-18	55463	160511_QHF_FH_JSI9i_2	139.15	121.94			0.99654	1.1048	45.904	4	0	Median	1.3566	1.1683	NaN	1	0	Median	0.58204	0.68982	58.704	2	0	Median	1.1686	1.19	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2920900000	2043700000	877170000	364220000	161690000	202530000	2400000000	1808200000	591750000	156690000	73798000	82890000	0	0	0	33070	1333	31273	204663;204664;204665;204666;204667;204668	276601;276602;276603;276604;276605;276606;276607;276608;276609;276610;276611;276612;276613;276614	276607			14	
LPFTPLSYIQGLSHR	0	Unmodified	1727.9359	0.93589019	5417	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	95.305	92.841	3	1.5836E-07	82124	160511_QHF_FH_JSI10i_3	137.46	126.41			0.84901	0.89582	19.01	6	1	Median	1.1347	0.95093	28.907	2	1	Median	0.76142	0.89582	0.45964	2	0	Median	1.042	0.99201	NaN	1	0	Median	0.66085	0.67487	NaN	1	0	Median	611540000	318610000	292920000	210990000	83300000	127690000	355000000	212840000	142160000	29518000	13735000	15782000	16025000	8733400	7291900	33071	5417	31274	204669;204670;204671;204672;204673;204674	276615;276616;276617;276618;276619;276620;276621	276617			6	
LPFTVVHER	0	Unmodified	1096.6029	0.60292873	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			41.084	37.226	3	0.00018201	30414	160511_QHF_FH_JSI9i_3	74.424	41.162			0.69285	0.80041	15.848	3	1	Median	1.0522	0.86058	NaN	1	0	Median	0.61272	0.7131	16.333	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218680000	120330000	98348000	87833000	42945000	44888000	130840000	77384000	53460000	0	0	0	0	0	0	33072	4234	31275	204675;204676;204677	276622;276623;276624;276625;276626	276625			5	
LPGAWDPAAHQGGNGVLLEGELIDVSR	0	Unmodified	2770.4038	0.40384157	3288	Q7Z6K5	ARPIN	Arpin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.493	93.47	3	0.030732	80954	160511_QHF_FH_JSI12i_3	21.699	14.338			0.70401	0.67224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70401	0.67224	NaN	1	1	Median	32448000	17615000	14833000	0	0	0	0	0	0	0	0	0	32448000	17615000	14833000	33073	3288	31276	204678	276627;276628	276627			2	
LPGELEPVQATQNK	1	Unmodified	1522.7991	0.79912193	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	44.122	43.456	2;3	7.678E-05	38520	160511_QHF_FH_JSI9i_1	115.29	96.044			0.85062	1.3008	38.829	8	1	Linear	1.4054	1.1566	49.704	2	0	Median	1.0927	1.2713	56.319	2	0	Median	1.3394	1.3256	47.605	2	0	Median	1.3514	1.4313	46.607	2	1	Median	1959400000	949310000	1010100000	357710000	167730000	189980000	523880000	261010000	262870000	566520000	272710000	293810000	511290000	247860000	263420000	33074	570	31277	204679;204680;204681;204682;204683;204684;204685;204686	276629;276630;276631;276632;276633;276634;276635;276636;276637	276636			9	
LPGGELNPGEDEVEGLK	1	Unmodified	1751.8578	0.85775902	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.958	60.317	2	1.194E-10	54803	160511_QHF_FH_JSI11i_1	134.68	108.75			0.42879	0.44864	15.043	4	4	Median	0.42053	0.34648	NaN	1	1	Median	0.41095	0.48677	NaN	1	1	Median	0.44764	0.43371	NaN	1	1	Median	0.43722	0.46408	NaN	1	1	Median	3342700000	2172100000	1170700000	776820000	511910000	264910000	850380000	567550000	282830000	881640000	551920000	329720000	833910000	540690000	293220000	33075	379	31278	204687;204688;204689;204690	276638;276639;276640;276641;276642;276643;276644	276638			7	
LPGGHQTVLFSATLPK	1	Unmodified	1664.925	0.92499115	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	63.587	62.764	3	2.2839E-05	52758	160511_QHF_FH_JSI10i_3	84.874	71.461			0.90748	0.8655	4.827	4	0	Linear	1.1779	0.95038	NaN	1	0	Median	0.80526	0.97711	NaN	1	0	Median	0.96969	0.91949	NaN	1	0	Median	0.84926	0.87334	NaN	1	0	Median	564280000	303840000	260430000	91777000	46460000	45317000	83170000	45955000	37215000	108730000	62195000	46535000	280600000	149230000	131370000	33076	3720	31279	204691;204692;204693;204694	276645;276646;276647;276648	276646			4	
LPGHAGSINEVAFHPDEPIIISASSDK	1	Unmodified	2800.4032	0.40317287	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	3	2	1	72.732	72.046	3;4	4.9494E-18	64345	160511_QHF_FH_JSI11i_3	108.75	106.07			0.85228	0.94792	25.008	7	3	Median	1.4173	1.2085	NaN	1	1	Median	0.76018	0.94792	31.882	3	1	Plateau	0.91045	0.85236	17.035	2	1	Median	0.85228	0.86635	NaN	1	0	Median	811770000	393310000	418460000	55341000	17402000	37939000	154500000	77851000	76653000	453100000	221440000	231660000	148820000	76612000	72213000	33077	4029	31280	204695;204696;204697;204698;204699;204700;204701	276649;276650;276651;276652;276653;276654;276655;276656;276657;276658;276659;276660;276661;276662	276651			14	
LPGIPIKIVMEAIQQASVAK	2	Oxidation (M)	2121.2231	0.223147	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	1	1				By MS/MS	16	0									1				1	101.19	91.744	3	0.00081676	50519	160513_QHF_FH_JSI12Kac_6	60.062	46.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33078	3709	31281	204702	276663	276663		2281	1	
LPGISETAMIFAGVDVTK	1	Unmodified	1847.9703	0.97028636	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	101.39	101.28	3	0.0084546	89076	160511_QHF_FH_JSI9i_2	49.708	44.068			0.99318	1.0649	18.295	4	0	Median	1.3608	1.1585	NaN	1	0	Median	0.62335	0.76849	NaN	1	0	Median	1.0734	1.0947	NaN	1	0	Median	0.91895	1.0359	NaN	1	0	Median	488620000	240510000	248110000	115830000	49450000	66378000	82035000	45460000	36575000	139760000	62300000	77456000	151000000	83302000	67703000	33079	1367	31282	204703;204704;204705;204706	276664	276664			0	
LPGLGIIIYLLK	1	Unmodified	1311.853	0.8529954	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.51	91.088	2	0.024202	52300	160513_QHF_FH_JSI11Kac_6	47.187	35.339			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33080	3862	31283	204707	276665	276665			1	
LPGPAPDKPNVYDFK	2	Unmodified	1656.8512	0.8511575	4887	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	53.442	52.758	3	0.0054816	45339	160511_QHF_FH_JSI12i_3	43.791	31.506			0.95151	0.95815	5.8483	6	1	Median	1.1583	0.96907	NaN	1	1	Median	0.77565	0.94736	NaN	1	0	Median	0.94294	0.90166	4.0478	2	0	Median	0.96627	1.0193	1.2658	2	0	Median	633320000	326130000	307190000	64263000	33819000	30444000	76453000	40662000	35792000	221020000	95551000	125470000	271580000	156090000	115490000	33081	4887	31284	204708;204709;204710;204711;204712;204713	276666;276667;276668;276669;276670;276671;276672;276673;276674	276674			9	
LPGPTGSVVSTGTSFSSSSPGLASAGAAEGK	1	Unmodified	2763.3563	0.35628226	3265	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	70.353	69.798	3	2.4069E-09	63412	160511_QHF_FH_JSI11i_1	57.78	54.439			0.85662	0.8314	13.906	5	2	Median	1.1045	0.90227	NaN	1	0	Median	0.58769	0.71283	NaN	1	0	Median	0.85662	0.8314	NaN	1	0	Median	0.86755	0.89657	19.194	2	2	Median	290350000	162620000	127730000	47869000	25521000	22348000	66570000	43472000	23098000	75390000	43037000	32354000	100520000	50588000	49932000	33082	3265	31285	204714;204715;204716;204717;204718	276675;276676;276677;276678;276679	276675			5	
LPGPTLWASYSLEYGK	1	Unmodified	1780.9036	0.903587	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.61		4	6						7	3	3	6	5	90.235	86.856	2;3	1.958E-07	79919	160511_QHF_FH_JSI12i_3	137.59	121.96			0.92848	0.9511	20.189	16	1	Median	1.0527	0.89672	12.771	3	0	Plateau	0.88816	1.0374	9.3237	3	0	Median	0.91199	0.85636	23.154	5	1	Median	1.2022	1.2257	16.401	5	0	Median	1996400000	1009200000	987180000	375530000	191220000	184300000	445410000	235740000	209670000	580980000	284910000	296070000	594480000	297340000	297140000	33083	877	31286	204719;204720;204721;204722;204723;204724;204725;204726;204727;204728;204729;204730;204731;204732;204733;204734;204735	276680;276681;276682;276683;276684;276685;276686;276687;276688;276689;276690;276691;276692;276693;276694;276695;276696;276697;276698;276699;276700;276701;276702;276703;276704;276705;276706;276707;276708;276709;276710;276711	276704			31	
LPGQDESTAGTSEQNDILK	1	Unmodified	2001.9491	0.94909323	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	45.74	44.802	2	0.0014667	39815	160511_QHF_FH_JSI9i_1	61.038	52.309			0.8893	0.82444	5.8758	2	1	Median	0.98333	0.79089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80425	0.85941	NaN	1	0	Median	59238000	31761000	27476000	19641000	10180000	9461200	0	0	0	0	0	0	39597000	21582000	18015000	33084	5646	31287	204736;204737;204738	276712;276713;276714;276715	276715			4	
LPGSFGKIPK	2	Unmodified	1042.6175	0.61751616	5784				yes	yes	0	0	0	1				By MS/MS	2	0		1											1	85.471	84.444	2	0.055587	73003	160511_QHF_FH_JSI12i_2	50.607	0	+		1.0858	1.1655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0858	1.1655	NaN	1	0	Median	44611000	21220000	23391000	0	0	0	0	0	0	0	0	0	44611000	21220000	23391000	33085	5784	31288	204739	276716	276716			1	
LPHELCTLIR	0	Unmodified	1250.6805	0.68052712	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		52.076	52.076	3	0.042311	46242	160511_QHF_FH_JSI11i_3	40.154	32.952			0.41761	0.39735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41761	0.39735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56309000	35187000	21123000	0	0	0	0	0	0	56309000	35187000	21123000	0	0	0	33086	2299	31289	204740	276717	276717			0	
LPHFQLSR	0	Unmodified	996.5505	0.55049923	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.184	38.675	3	0.00078874	32263	160511_QHF_FH_JSI10i_3	66.692	47.598			0.93676	0.90491	1.614	2	0	Median	1.1161	0.9153	NaN	1	0	Median	0.78622	0.89464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	247170000	142510000	104660000	88925000	39585000	49340000	158250000	102920000	55323000	0	0	0	0	0	0	33087	1890	31290	204741;204742	276718;276719	276718			2	
LPHLLLYGPPGTGK	1	Unmodified	1461.8344	0.83438523	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	66.549	65.731	3	0.0020623	55208	160511_QHF_FH_JSI10i_3	50.088	43.79			1.0181	1.0168	8.5996	4	0	Median	1.3501	1.1001	NaN	1	0	Median	0.83229	0.97203	NaN	1	0	Median	1.0132	0.91048	NaN	1	0	Median	1.0229	1.0635	NaN	1	0	Median	147520000	74744000	72774000	29267000	12064000	17204000	24877000	13554000	11323000	33978000	19057000	14920000	59396000	30069000	29327000	33088	1505	31291	204743;204744;204745;204746	276720	276720			1	
LPHLLQLPENYNTIFQYYHR	0	Unmodified	2558.307	0.30702806	3190	Q6ZT12	UBR3	E3 ubiquitin-protein ligase UBR3	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	87.597	78.155	4	3.9987E-08	41844	160513_QHF_FH_JSI12Kac_6	88.565	80.378			0.72327	0.77393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72327	0.77393	NaN	1	0	Median	86122000	46867000	39255000	0	0	0	0	0	0	0	0	0	86122000	46867000	39255000	33089	3190	31292	204747	276721	276721			0	
LPHLPGLEDLGIQATPLELK	1	Unmodified	2153.2096	0.20960543	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	101.28	101.19	3	2.8021E-14	86983	160511_QHF_FH_JSI12i_2	143.46	128.04			0.88283	1.0318	20.634	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95907	1.1791	NaN	1	0	Median	0.79999	0.81911	NaN	1	0	Median	1.0009	1.0655	23.413	2	0	Median	1017900000	547800000	470140000	0	0	0	276050000	138920000	137130000	281550000	162800000	118750000	460350000	246090000	214260000	33090	2767	31293	204748;204749;204750;204751	276722;276723;276724;276725;276726;276727;276728;276729	276723			8	
LPHLQFLELK	1	Unmodified	1236.723	0.72304386	619	O94898	LRIG2	Leucine-rich repeats and immunoglobulin-like domains protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.563	76.424	3	0.00051251	66430	160511_QHF_FH_JSI12i_3	67.726	52.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33091	619	31294	204752;204753	276730;276731	276731			2	
LPHLWDAMVGPLR	0	Unmodified	1503.802	0.80203924	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								2	1		88.602	88.062	3	0.00036893	77960	160511_QHF_FH_JSI11i_3	62.088	55.79			0.73762	0.78345	20.447	2	1	Median	NaN	NaN	NaN	0	0	Median	0.5694	0.67799	NaN	1	1	Median	0.95553	0.90532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21510000	11793000	9716600	0	0	0	4016200	2423900	1592300	17494000	9369200	8124300	0	0	0	33092	232	31295	204754;204755;204756	276732;276733;276734	276732			3	
LPHPAAPVTVK	1	Unmodified	1128.6655	0.66552898	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	32.158	32.119	3	0.00035201	27894	160511_QHF_FH_JSI11i_3	50.95	41.992			1.1201	1.0813	15.27	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0408	0.97065	NaN	1	0	Median	1.2055	1.2046	NaN	1	1	Median	78159000	35827000	42332000	0	0	0	0	0	0	35561000	18772000	16789000	42598000	17056000	25542000	33093	2257	31296	204757;204758	276735;276736;276737	276735			3	
LPHPDLPAEEK	1	Unmodified	1244.6401	0.6401021	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			22.752	21.52	3	0.060341	17560	160511_QHF_FH_JSI10i_3	14.876	5.4434			0.61868	0.74905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61868	0.74905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79186000	50161000	29024000	0	0	0	79186000	50161000	29024000	0	0	0	0	0	0	33094	2856	31297	204759	276738	276738			1	
LPHPILPFSGNPEFLK	1	Unmodified	1804.9876	0.98759141	3194	Q6ZV73	FGD6	FYVE, RhoGEF and PH domain-containing protein 6	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	89.226	88.829	3	1.3439E-05	76982	160511_QHF_FH_JSI12i_3	93.237	82.603			1.2283	1.13	26.801	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5441	1.712	NaN	1	0	Median	1.2283	1.13	NaN	1	0	Median	0.9655	1.0373	NaN	1	0	Median	61132000	26567000	34566000	0	0	0	20543000	7077300	13465000	20723000	10031000	10692000	19866000	9458100	10408000	33095	3194	31298	204760;204761;204762	276739;276740	276740			2	
LPHSVLLEIQK	1	Unmodified	1275.7551	0.75507227	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		2	8						2	3	3	3	3	56.322	53.969	2;3	2.7161E-48	47574	160511_QHF_FH_JSI11i_3	184.24	171.28			1.0598	1.0592	26.985	12	2	Median	1.3732	1.1137	6.9106	3	0	Median	0.92916	1.0628	6.9773	3	0	Plateau	0.99059	0.91651	47.561	3	1	Plateau	1.0592	1.0557	31.333	3	1	Plateau	4139500000	1895200000	2244300000	466950000	173420000	293530000	590430000	282820000	307610000	1083500000	513480000	570040000	1998600000	925470000	1073200000	33096	5697	31299	204763;204764;204765;204766;204767;204768;204769;204770;204771;204772;204773;204774	276741;276742;276743;276744;276745;276746;276747;276748;276749;276750;276751;276752;276753;276754	276742			14	
LPHVKYICPHAPR	1	Acetyl (K)	1628.861	0.8609511	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.055	41.335	3	0.034709	22507	160513_QHF_FH_JSI11Kac_6	38.445	26.085			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5065600	5065600	0	0	0	0	0	0	0	5065600	5065600	0	0	0	0	33097	685	31300	204775	276755	276755			1	
LPHVLLLQLGTTFFK	1	Unmodified	1726.0182	0.018163252	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.2			7						13	7	4	4	5	97.225	92.034	2;3	4.6603E-69	90755	160511_QHF_FH_JSI11i_3	205.72	194.66			0.79528	0.78793	13.784	13	13	Median	0.81708	0.69102	10.024	4	4	Median	0.64461	0.73838	20.989	3	3	Median	0.91659	0.86865	10.089	3	3	Median	0.77488	0.8113	4.6753	3	3	Median	13583000000	7577500000	6005400000	2614000000	1404400000	1209700000	5322200000	3075000000	2247200000	3496900000	1792700000	1704300000	2149700000	1305600000	844180000	33098	379	31301	204776;204777;204778;204779;204780;204781;204782;204783;204784;204785;204786;204787;204788;204789;204790;204791;204792;204793;204794;204795	276756;276757;276758;276759;276760;276761;276762;276763;276764;276765;276766;276767;276768;276769;276770;276771;276772;276773;276774;276775;276776	276757			21	
LPHYFPVA	0	Unmodified	942.49634	0.49633839	4351	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	67.319	58.266	2	0.0086682	30479	160513_QHF_FH_JSI12Kac_6	70.49	60.902			1.4783	1.3772	43.333	4	0	Median	1.9912	1.6687	NaN	1	0	Median	2.3161	2.7598	NaN	1	0	Median	1.0975	1.0824	NaN	1	0	Median	1.0496	1.1366	NaN	1	0	Median	97582000	37980000	59601000	14868000	4778000	10090000	30799000	8046400	22753000	24511000	11623000	12888000	27404000	13533000	13871000	33099	4351	31302	204796;204797;204798;204799	276777;276778;276779;276780	276780			4	
LPIAPLIMGSHPVDNK	1	Unmodified	1700.9284	0.92836197	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.688	72.888	3	0.00023339	64824	160511_QHF_FH_JSI11i_3	58.98	51.778			1.0111	1.0371	9.1264	4	1	Median	1.4414	1.2007	NaN	1	1	Median	0.90187	1.0536	NaN	1	0	Median	1.0396	0.96922	NaN	1	0	Median	0.98326	1.0208	NaN	1	0	Median	238050000	129150000	108910000	18924000	7984100	10940000	24894000	12990000	11904000	77509000	42673000	34836000	116730000	65499000	51227000	33100	2694	31303	204800;204801;204802;204803	276781;276782;276783;276784;276785;276786;276787	276781			7	
LPIDVTEGEVISLGLPFGK	1	Unmodified	1983.0928	0.092844338	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.9	101.72	3	5.6402E-05	87675	160511_QHF_FH_JSI12i_2	62.203	51.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123470000	70634000	52841000	0	0	0	0	0	0	0	0	0	123470000	70634000	52841000	33101	1281	31304	204804	276788	276788			1	
LPIFFFGTHETAFLGPK	1	Unmodified	1921.0138	0.013806156	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			6						10	5	4	4	3	96.18	91.091	2;3	8.7277E-43	48105	160513_QHF_FH_JSI10Kac_6	204.48	190.22			1.1546	1.1708	32.661	16	5	Median	1.5244	1.3025	33.517	5	4	Median	0.71011	0.83186	16.802	4	0	Median	1.5422	1.4577	29.554	4	1	Median	1.1411	1.1663	6.9587	3	0	Median	15435000000	7058100000	8376900000	2835800000	1187100000	1648700000	3112700000	1832000000	1280600000	4495200000	1796700000	2698500000	4991300000	2242200000	2749100000	33102	532	31305	204805;204806;204807;204808;204809;204810;204811;204812;204813;204814;204815;204816;204817;204818;204819;204820	276789;276790;276791;276792;276793;276794;276795;276796;276797;276798;276799;276800;276801;276802;276803;276804;276805;276806;276807;276808;276809;276810;276811;276812;276813;276814	276812			26	
LPIGDVATQYFADR	0	Unmodified	1564.7886	0.78855725	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.759	3	5	4							2	3	4	3	79.361	78.947	2;3	0.00025437	70555	160511_QHF_FH_JSI11i_3	103.34	83.58			0.99418	0.9319	19.73	12	1	Median	1.1322	0.96116	5.7438	2	0	Median	0.65833	0.74687	5.7003	3	1	Plateau	0.9401	0.91159	14.982	4	0	Median	1.0911	1.1035	21.866	3	0	Median	1382500000	707990000	674520000	215190000	89802000	125380000	242200000	146560000	95631000	642430000	339670000	302770000	282700000	131960000	150740000	33103	4321	31306	204821;204822;204823;204824;204825;204826;204827;204828;204829;204830;204831;204832	276815;276816;276817;276818;276819;276820;276821;276822;276823;276824;276825	276817			9	
LPIGDVATQYFADRDMFCAGR	0	Unmodified	2402.1147	0.11473554	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			93.682	92.705	3	0.036831	77545	160511_QHF_FH_JSI10i_3	29.892	20.477			0.85478	0.9842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85478	0.9842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32363000	17190000	15173000	0	0	0	32363000	17190000	15173000	0	0	0	0	0	0	33104	4321	31307	204833	276826	276826			1	
LPIGNTIQPSQAATFMNDAIEK	1	Unmodified	2358.1889	0.18894634	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									1	1	2	1	93.688	93.33	3	0.00034998	84494	160511_QHF_FH_JSI10i_1	45.011	36.192			0.86103	0.76203	22.784	5	2	Median	0.94606	0.76203	NaN	1	0	Median	0.86103	0.9542	NaN	1	0	Median	0.79064	0.76582	40.763	2	2	Median	0.75676	0.74879	NaN	1	0	Median	75661000	41000000	34661000	12262000	6384800	5877300	19281000	8845400	10436000	28742000	17534000	11208000	15375000	8235300	7139600	33105	327	31308	204834;204835;204836;204837;204838	276827;276828;276829;276830;276831	276829			5	
LPIIGVVENMSGFICPK	1	Unmodified	1872.9842	0.98416229	1797	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	102.35	102.27	3	1.227E-06	88874	160511_QHF_FH_JSI12i_3	100.45	90.533			0.91446	0.86015	13.729	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.68541	0.83198	NaN	1	0	Median	0.67045	0.66985	NaN	1	0	Median	0.8486	0.89514	0.92954	2	0	Median	258360000	141770000	116590000	0	0	0	57771000	34778000	22992000	52726000	32800000	19926000	147860000	74191000	73668000	33106	1797	31309	204839;204840;204841;204842	276832;276833	276832			2	
LPIPESQVITINPELPVEEAAEDYAK	1	Unmodified	2864.4695	0.4695211	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		101.44	101.38	3	4.7245E-18	92121	160511_QHF_FH_JSI10i_1	110.68	107.69			1.0157	1.0894	9.7415	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98507	1.1671	NaN	1	0	Median	1.0474	1.0169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	784970000	344680000	440290000	0	0	0	408960000	170540000	238420000	376000000	174140000	201870000	0	0	0	33107	677	31310	204843;204844	276834	276834			1	
LPIQKHR	1	Acetyl (K)	932.55558	0.55558461	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		20.793	12.797	3	0.030883	8127	160513_QHF_FH_JSI11Kac_6	37.558	8.4093			0.60079	0.63715	111.56	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2217	1.4022	NaN	1	0	Median	0.29545	0.28951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12847000	8243200	4603400	0	0	0	4722900	2033300	2689600	8123700	6210000	1913800	0	0	0	33108	179	31311	204845;204846	276835;276836	276835			2	
LPIQLQALSLPLVVIVHGNQDNNAK	1	Unmodified	2693.5228	0.5228345	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	96.792	87.367	3	2.5543E-34	49697	160513_QHF_FH_JSI11Kac_6	157.68	144.07			1.074	1.0795	5.8672	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.198	1.1253	NaN	1	0	Median	0.96295	1.0357	NaN	1	0	Median	234200000	115280000	118920000	0	0	0	0	0	0	142050000	72186000	69860000	92149000	43094000	49055000	33109	1529	31312	204847;204848	276837	276837			1	
LPISASHSSK	1	Unmodified	1025.5506	0.55055881	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	2	2	2	10.818	8.5479	2;3	0.0024267	7058	160511_QHF_FH_JSI9i_3	47.894	33.687			1.0289	1.0451	24.12	8	2	Median	1.7144	1.44	2.4053	2	1	Median	0.81428	0.93804	3.9125	2	0	Median	1.162	1.1358	45.398	2	1	Median	1.0289	1.0451	0.84288	2	0	Median	1437800000	718790000	718990000	80158000	33421000	46737000	201120000	111890000	89230000	178170000	97190000	80982000	978330000	476290000	502040000	33110	1790	31313	204849;204850;204851;204852;204853;204854;204855;204856	276838;276839;276840;276841;276842;276843;276844;276845	276842			7	
LPISDSPPDTQEIHVIEQEK	1	Unmodified	2274.138	0.13795663	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	65.267	64.344	3	0.00012651	56497	160511_QHF_FH_JSI9i_2	55.588	33.578			1.1138	1.4103	22.72	3	0	Plateau	1.1138	0.9384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4372	1.4379	NaN	1	0	Median	0.94547	1.0148	NaN	1	0	Median	138090000	68761000	69325000	40157000	18554000	21603000	0	0	0	53317000	28608000	24710000	44612000	21600000	23012000	33111	3819	31314	204857;204858;204859	276846;276847;276848;276849	276848			4	
LPITVLNGAPGFINLCDALNAWQLVK	1	Unmodified	2836.531	0.53095634	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	102.12	100.22	3	7.5134E-43	55364	160513_QHF_FH_JSI10Kac_6	163.71	149.65			0.45153	0.53867	64.467	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.45153	0.53867	NaN	1	0	Median	0.78016	0.74785	NaN	1	0	Median	1.839	1.8687	NaN	1	1	Median	157140000	95420000	61720000	0	0	0	73305000	50894000	22412000	42198000	21761000	20436000	41637000	22766000	18871000	33112	1381	31315	204860;204861;204862	276850;276851;276852	276852			3	
LPIVNEDDELVAIIAR	0	Unmodified	1778.9778	0.97781458	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By matching			1.67	0.471	1	2								1	2			101.23	101.17	2	0.0013625	88959	160511_QHF_FH_JSI9i_2	80.17	56.319			0.79422	0.98899	10.635	3	0	Median	1.2315	1.0433	NaN	1	0	Median	0.7601	0.91681	10.718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	305960000	162340000	143620000	90181000	41039000	49142000	215780000	121300000	94481000	0	0	0	0	0	0	33113	1015	31316	204863;204864;204865	276853	276853			1	
LPKPVQDLIK	2	Unmodified	1149.7121	0.71214483	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	50.898	50.299	3	0.012934	42491	160511_QHF_FH_JSI10i_3	45.433	35.778			1.027	0.75711	25.651	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.65203	0.75711	NaN	1	1	Median	0.69606	0.65779	NaN	1	1	Median	1.0317	1.0819	NaN	1	1	Median	1014800000	386360000	628400000	0	0	0	182660000	98307000	84354000	281870000	111660000	170210000	550230000	176390000	373840000	33114	939	31317	204866;204867;204868	276854;276855;276856	276855			3	
LPLAQVSAHPWVR	0	Unmodified	1472.8252	0.82521752	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				61.894	60.379	3	0.018811	49572	160511_QHF_FH_JSI9i_3	38.189	29.884			1.3495	1.1323	NaN	1	1	Median	1.3495	1.1323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15089000	6076600	9012600	15089000	6076600	9012600	0	0	0	0	0	0	0	0	0	33115	4088	31318	204869	276857	276857			1	
LPLDAAKR	1	Unmodified	882.5287	0.52870115	2583	Q14956	GPNMB	Transmembrane glycoprotein NMB	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				91.211	90.853	2	0.047314	79926	160511_QHF_FH_JSI9i_2	52.683	3.3247			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7065900	7065900	0	7065900	7065900	0	0	0	0	0	0	0	0	0	0	33116	2583	31319	204870	276858	276858			1	
LPLDINPVVHPHGHIFK	1	Unmodified	1932.0734	0.07338672	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			20							8	3	1	8	74.99	74.123	4;5	9.0104E-06	59884	160511_QHF_FH_JSI12i_3	86.378	76.456			1.042	1.99	38.476	20	7	Linear	1.0394	0.86578	20.091	8	2	Median	0.38589	0.45696	26.145	3	2	Median	1.1065	1.0524	NaN	1	0	Median	1.1472	1.1609	26.742	8	3	Median	452830000	227000000	225840000	94493000	47752000	46742000	36100000	22944000	13155000	11156000	4727500	6428200	311090000	151570000	159510000	33117	2509	31320	204871;204872;204873;204874;204875;204876;204877;204878;204879;204880;204881;204882;204883;204884;204885;204886;204887;204888;204889;204890	276859;276860;276861;276862;276863;276864;276865;276866;276867;276868;276869;276870;276871;276872;276873;276874;276875;276876;276877;276878;276879;276880;276881	276875			21	
LPLFGLGR	0	Unmodified	871.52797	0.52797287	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			73.952	72.512	2	0.05083	60821	160511_QHF_FH_JSI10i_3	37.094	4.1648			0.76391	0.91848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76391	0.91848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90469000	48218000	42250000	0	0	0	90469000	48218000	42250000	0	0	0	0	0	0	33118	2113	31321	204891	276882	276882			1	
LPLFPEPLHVFAPR	0	Unmodified	1631.9188	0.91878356	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	98.195	98.012	3	5.1453E-08	80095	160511_QHF_FH_JSI9i_3	95.631	83.346			1.0614	1.0934	8.0898	7	3	Median	1.3876	1.1584	NaN	1	0	Median	0.99252	1.1107	8.032	3	2	Median	1.1238	1.0704	3.0039	2	1	Median	0.90002	0.9397	NaN	1	0	Median	526140000	256990000	269140000	25214000	11710000	13504000	298730000	150110000	148620000	195250000	90968000	104280000	6945800	4202900	2742900	33119	1273	31322	204892;204893;204894;204895;204896;204897;204898;204899	276883;276884;276885;276886;276887;276888;276889;276890;276891;276892	276886			10	
LPLGLLLHPFK	1	Unmodified	1246.7802	0.78016481	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			15						6	5	5	5	6	90.834	86.481	3	4.2232E-05	81371	160511_QHF_FH_JSI12i_3	88.681	80.46			0.68213	0.66391	27.072	8	8	Median	0.92055	0.76381	28.153	2	2	Median	0.7493	0.8705	29.985	2	2	Median	0.759	0.7271	33.46	2	2	Median	0.5415	0.55565	13.561	2	2	Median	711690000	398770000	312920000	163340000	89943000	73394000	224270000	126320000	97953000	188190000	100380000	87813000	135890000	82135000	53756000	33120	700	31323	204900;204901;204902;204903;204904;204905;204906;204907;204908;204909;204910;204911;204912;204913;204914;204915;204916;204917;204918;204919;204920	276893;276894;276895;276896;276897;276898;276899;276900;276901;276902;276903;276904;276905;276906;276907;276908;276909;276910;276911;276912;276913;276914;276915;276916;276917;276918;276919;276920	276916			28	
LPLGLLLHPFR	0	Unmodified	1274.7863	0.78631282	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	87	78.493	3	3.1489E-15	44732	160513_QHF_FH_JSI10Kac_6	148.94	128.91			0.84145	0.89165	53.408	5	1	Median	1.3904	1.1864	NaN	1	0	Median	0.74619	0.89165	NaN	1	0	Median	0.84145	0.80929	NaN	1	0	Median	1.0974	1.1493	100.9	2	1	Median	1636100000	860490000	775640000	393920000	173160000	220770000	650160000	368170000	281980000	266900000	148540000	118360000	325160000	170630000	154530000	33121	701	31324	204921;204922;204923;204924;204925	276921;276922;276923;276924;276925;276926;276927;276928	276928			8	
LPLHLYDTPGSTYNLQILTR	0	Unmodified	2314.2321	0.23213179	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			91.817	90.758	3	1.6265E-06	74377	160511_QHF_FH_JSI9i_3	85.146	76.959			1.0842	1.0794	12.653	2	0	Median	1.4127	1.1804	NaN	1	0	Median	0.83199	0.98699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31703000	14212000	17491000	12582000	3916900	8665000	19121000	10295000	8826000	0	0	0	0	0	0	33122	5409	31325	204926;204927	276929;276930;276931;276932	276932			4	
LPLHTLTSSTPVVLVR	0	Unmodified	1732.0247	0.024705193	1110	P17152	TMEM11	Transmembrane protein 11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		72.52	71.545	3	1.2188E-05	58887	160511_QHF_FH_JSI9i_3	94.461	90.557			0.8537	0.99188	13.299	3	0	Plateau	1.2882	1.0286	NaN	1	0	Median	0.69846	0.84993	NaN	1	0	Median	0.8537	0.79635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243140000	127270000	115870000	93737000	45418000	48318000	82276000	50598000	31679000	67125000	31251000	35874000	0	0	0	33123	1110	31326	204928;204929;204930	276933;276934;276935;276936;276937	276936			5	
LPLIFHLGR	0	Unmodified	1064.6495	0.64948499	1412	P34059	GALNS	N-acetylgalactosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.403	70.043	3	4.6498E-05	38821	160513_QHF_FH_JSI10Kac_6	84.743	81.156			0.9024	0.94643	21.278	4	0	Median	1.5976	1.3842	NaN	1	0	Median	0.76224	0.88474	NaN	1	0	Median	1.0199	1.0124	NaN	1	0	Median	0.79844	0.87844	NaN	1	0	Median	296730000	162270000	134460000	67851000	21103000	46748000	177460000	108950000	68503000	37892000	25120000	12772000	13528000	7095100	6432800	33124	1412	31327	204931;204932;204933;204934	276938;276939;276940;276941;276942;276943;276944	276943			7	
LPLILVGNK	1	Unmodified	965.62735	0.62735256	3442	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	68.622	68.473	2	0.016267	59271	160511_QHF_FH_JSI12i_3	43.246	17.352			1.2968	1.2877	14.294	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2232	1.1639	NaN	1	0	Median	1.3748	1.4246	NaN	1	0	Median	75560000	37462000	38098000	0	0	0	0	0	0	36271000	17898000	18373000	39289000	19564000	19725000	33125	3442	31328	204935;204936	276945;276946	276946			2	
LPLISGFYK	1	Unmodified	1036.5957	0.59571809	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.27	2	4	4						4	3	4	4	3	77.333	74.469	2	0.00030202	65562	160511_QHF_FH_JSI12i_2	83.265	72.851			0.95055	0.94797	15.517	14	0	Median	1.0423	0.89224	10.35	3	0	Median	0.80063	0.97028	15.482	4	0	Median	1.1296	1.0822	11.577	4	0	Median	0.85706	0.92018	19.036	3	0	Median	2465800000	1273200000	1192600000	425620000	205950000	219670000	447470000	223990000	223480000	908480000	464930000	443540000	684280000	378360000	305920000	33126	2094	31329	204937;204938;204939;204940;204941;204942;204943;204944;204945;204946;204947;204948;204949;204950	276947;276948;276949;276950;276951;276952;276953;276954;276955;276956;276957;276958;276959;276960;276961;276962;276963;276964;276965;276966;276967;276968;276969;276970;276971;276972;276973;276974;276975;276976;276977;276978	276950			32	
LPLLFQLIIDYLAEFNSTPAVFTMITEQLK	1	Unmodified	3467.8666	0.86660314	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		107.14	100.19	3;4	2.6843E-57	60081	160513_QHF_FH_JSI10Kac_6	173.07	159.12			1.2827	1.5135	52.124	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4224	1.6827	14.984	2	0	Median	0.73929	0.69518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	581010000	249950000	331060000	0	0	0	570710000	242370000	328340000	10307000	7581200	2725400	0	0	0	33127	387	31330	204951;204952;204953	276979;276980;276981;276982;276983	276983			5	
LPLLFQLIIDYLAEFNSTPAVFTMITEQLKK	2	Oxidation (M)	3611.9565	0.95648078	387	O43847	NRD1	Nardilysin	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			106.01	100.29	4	0.00080522	59479	160513_QHF_FH_JSI10Kac_6	47.757	38.614			1.3877	1.6614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3877	1.6614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32586000	16204000	16382000	0	0	0	32586000	16204000	16382000	0	0	0	0	0	0	33128	387	31331	204954	276984	276984		153	1	
LPLLFQLIIDYLAEFNSTPAVFTMITEQLKK	2	Unmodified	3595.9616	0.96156616	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			106.32	100.6	4	4.3131E-57	59636	160513_QHF_FH_JSI10Kac_6	168.72	159.26			1.2239	1.4768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2239	1.4768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	285760000	117010000	168750000	0	0	0	285760000	117010000	168750000	0	0	0	0	0	0	33129	387	31331	204955	276985;276986	276985			2	
LPLLLSR	0	Unmodified	810.53272	0.5327239	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	60.155	59.326	2	0.029275	52559	160511_QHF_FH_JSI11i_3	52.683	8.0723			0.87024	0.84373	6.2831	4	0	Median	1.0859	0.89322	NaN	1	0	Median	0.6937	0.80268	NaN	1	0	Median	0.85708	0.79445	NaN	1	0	Median	0.8836	0.88687	NaN	1	0	Median	484450000	245930000	238520000	135770000	54782000	80993000	98555000	54419000	44136000	99504000	51400000	48104000	150610000	85329000	65284000	33130	1690	31332	204956;204957;204958;204959	276987	276987			1	
LPLLLTHEGVLLPGSTMR	0	Unmodified	1946.1023	0.10230359	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		92.925	92.243	3	0.0010854	81961	160511_QHF_FH_JSI11i_3	54.805	37.586			1.617	1.5539	36.075	3	3	Plateau	3.4808	2.8963	NaN	1	1	Median	2.3396	2.7171	NaN	1	1	Median	1.617	1.5055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49464000	23890000	25574000	13180000	4844200	8336000	14679000	6598600	8080200	21605000	12447000	9157700	0	0	0	33131	3355	31333	204960;204961;204962	276988;276989;276990	276988			3	
LPLLLVANAGTAAVGHTDK	1	Unmodified	1860.0469	0.046897198	3111	Q6P996;Q6P474	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	79.489	78.954	3	0.0030616	70505	160511_QHF_FH_JSI11i_3	47.088	41.66			0.44618	0.42689	95.684	3	3	Median	NaN	NaN	NaN	0	0	Median	1.7594	2.1324	NaN	1	1	Median	0.44618	0.42689	NaN	1	1	Median	0.37244	0.38873	NaN	1	1	Median	38513000	28519000	9994600	0	0	0	5755300	1686400	4068900	18535000	14760000	3774400	14223000	12072000	2151300	33132	3111	31334	204963;204964;204965	276991;276992;276993	276991			3	
LPLLPHEVR	0	Unmodified	1072.6393	0.63931423	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	45.629	44.715	3	5.4532E-06	38664	160511_QHF_FH_JSI12i_2	94.692	73.821			1.078	1.0521	11.365	8	0	Median	1.2642	1.0581	2.595	2	0	Median	0.89765	1.0554	9.5095	2	0	Median	0.98256	0.95288	15.787	2	0	Median	1.0036	1.0719	19.477	2	0	Median	2275000000	1089200000	1185700000	202660000	85166000	117490000	343590000	208010000	135570000	959080000	457780000	501300000	769640000	338270000	431370000	33133	357	31335	204966;204967;204968;204969;204970;204971;204972;204973	276994;276995;276996;276997;276998;276999;277000;277001;277002;277003;277004;277005;277006;277007;277008;277009;277010;277011	276997			18	
LPLPEPWR	0	Unmodified	1006.56	0.56000128	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.746	69.795	2	0.0076139	60202	160511_QHF_FH_JSI12i_2	58.981	15.981			0.94557	0.99961	1.8365	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98354	0.98671	NaN	1	0	Median	0.90906	1.0127	NaN	1	0	Median	195600000	96614000	98988000	0	0	0	0	0	0	107930000	51550000	56384000	87668000	45064000	42604000	33134	4834	31336	204974;204975	277012;277013	277012			2	
LPLPVHVR	0	Unmodified	929.58107	0.58107107	4011	Q96CP7	TLCD1	Calfacilitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	2	1	44.911	44.039	3	0.0011751	36385	160511_QHF_FH_JSI9i_3	58.917	50.145			1.0085	1.0155	19.547	5	2	Median	1.3163	1.0996	NaN	1	0	Median	0.6761	0.83015	28.495	2	1	Median	1.1279	1.0529	NaN	1	1	Median	1.0085	1.0088	NaN	1	0	Median	368930000	175660000	193270000	101790000	45881000	55909000	98683000	56797000	41886000	79120000	32177000	46942000	89334000	40805000	48529000	33135	4011	31337	204976;204977;204978;204979;204980;204981	277014;277015;277016;277017;277018;277019;277020;277021;277022;277023;277024;277025;277026	277021			13	
LPLPYGFSAMQGWR	0	Unmodified	1621.8075	0.80751855	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	88.892	79.753	2	0.031268	44541	160513_QHF_FH_JSI11Kac_6	43.084	20.167			0.93674	0.86471	25.798	3	0	Median	1.3252	1.1564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93674	0.86471	NaN	1	0	Median	0.66339	0.6913	NaN	1	0	Median	132010000	69177000	62831000	35574000	14166000	21408000	0	0	0	60826000	32726000	28100000	35608000	22286000	13322000	33136	279	31338	204982;204983;204984	277027;277028	277027			2	
LPLQANVYPMTTMAYIQDAK	1	Unmodified	2267.133	0.13301137	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	96.371	96.034	3	0.00036212	82652	160511_QHF_FH_JSI12i_2	51.348	42.747			2.1786	2.331	8.5359	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1329	2.1944	NaN	1	0	Median	2.2254	2.476	NaN	1	0	Median	41722000	14814000	26908000	0	0	0	0	0	0	21331000	7282000	14049000	20391000	7532300	12859000	33137	2755	31339	204985;204986;204987	277029;277030;277031	277030			3	
LPLQDVYK	1	Unmodified	974.54368	0.54368251	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	46.513	45.835	2	0.0046723	41274	160511_QHF_FH_JSI10i_1	67.981	37.796			0.83059	0.90768	7.744	4	0	Linear	0.96127	0.80572	NaN	1	0	Median	0.80075	0.93018	NaN	1	0	Median	0.90492	0.88572	NaN	1	0	Median	0.91242	0.96296	NaN	1	0	Median	14946000000	8563600000	6382500000	2047400000	1059900000	987560000	5152100000	3074800000	2077200000	4568200000	2785000000	1783300000	3178400000	1644000000	1534500000	33138	2072;2231	31340	204988;204989;204990;204991;204992	277032;277033;277034;277035;277036;277037;277038;277039;277040;277041;277042;277043;277044;277045	277040			14	
LPLQDVYKIGGIGTVPVGR	1	Unmodified	1981.136	0.13604656	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	1		By MS/MS			3	0			1								1			85.9	84.728	3	0.049107	70883	160511_QHF_FH_JSI10i_3	29.444	20.397			0.36419	0.42543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36419	0.42543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9909600	7424200	2485400	0	0	0	9909600	7424200	2485400	0	0	0	0	0	0	33139	2072;2231	31341	204993	277046	277046			1	
LPLQDVYKIGGIGTVPVGR	1	Acetyl (K)	2023.1466	0.14661124	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	0	1			By MS/MS		16	0									2			2		88.701	79.362	2;3	7.7075E-05	44293	160513_QHF_FH_JSI11Kac_6	74.029	56.435			0.44976	0.42355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44976	0.42355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91411000	70700000	20710000	0	0	0	0	0	0	91411000	70700000	20710000	0	0	0	33140	2072;2231	31341	204994;204995	277047;277048	277047	2151		2	
LPLQLDDAVRPEAEGEEEGR	0	Unmodified	2222.0815	0.081504383	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2								1	3	2	60.449	59.883	3	0.00020936	51321	160511_QHF_FH_JSI12i_2	55.763	49.647			0.9897	1.061	14.097	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0166	1.2454	NaN	1	1	Median	1.1089	1.133	12.954	3	0	Plateau	0.88331	0.93816	11.035	2	0	Median	631960000	314200000	317760000	0	0	0	130010000	62948000	67061000	343340000	163360000	179980000	158610000	87886000	70721000	33141	1064	31342	204996;204997;204998;204999;205000;205001	277049;277050;277051;277052;277053	277050			5	
LPLQLDDAVRPEAEGEEEGRATVNQDTR	0	Unmodified	3107.5119	0.51194805	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2		By MS/MS			2	0		2									2			59.731	58.855	3;4	0.0019205	52050	160511_QHF_FH_JSI10i_2	39.883	28.03			0.74685	0.93855	22.867	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74685	0.93855	22.867	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	179050000	99293000	79756000	0	0	0	179050000	99293000	79756000	0	0	0	0	0	0	33142	1064	31343	205002;205003	277054;277055	277055			2	
LPLSPPLVEDSAFEPSRK	1	Unmodified	1981.052	0.052042156	753	O96007	MOCS2	Molybdopterin synthase catalytic subunit	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	75.652	75.396	3	0.004688	67218	160511_QHF_FH_JSI11i_3	46.514	37.099			0.72271	0.65434	11.593	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.70683	0.87222	NaN	1	0	Median	0.78664	0.73546	7.6002	2	2	Median	0.66821	0.67532	NaN	1	0	Median	226720000	127960000	98762000	0	0	0	31069000	16803000	14266000	144230000	78887000	65341000	51422000	32268000	19155000	33143	753	31344	205004;205005;205006;205007;205008	277056;277057;277058;277059	277056			4	
LPMPEDYAMDELR	0	Unmodified	1578.7058	0.70581517	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.353	77.151	2	0.0020822	66647	160511_QHF_FH_JSI12i_2	58.223	51.534			1.0101	1.0832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0101	1.0832	NaN	1	0	Median	24399000	12198000	12200000	0	0	0	0	0	0	0	0	0	24399000	12198000	12200000	33144	1790	31345	205009	277060	277060			1	
LPMPNLK	1	Unmodified	811.4626	0.46259542	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	49.366	48.384	2	0.049359	41636	160511_QHF_FH_JSI11i_2	43	43			0.91453	0.9755	3.413	4	0	Median	1.1826	0.99601	NaN	1	0	Median	0.76866	0.92375	NaN	1	0	Median	0.93787	0.96224	NaN	1	0	Median	0.89176	0.98895	NaN	1	0	Median	498740000	266360000	232380000	93256000	40885000	52370000	119370000	71608000	47760000	160680000	81266000	79415000	125440000	72601000	52838000	33145	2374	31346	205010;205011;205012;205013	277061	277061			1	
LPMPSPERLDK	1	Unmodified	1281.6751	0.67510739	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	44.17	44.17	3	0.015572	37872	160511_QHF_FH_JSI12i_3	37.995	22.455			1.0327	0.96495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0327	0.96495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117350000	53380000	63970000	0	0	0	0	0	0	117350000	53380000	63970000	0	0	0	33146	4871	31347	205014;205015	277062;277063	277063			2	
LPNFGFVVFDDSEPVQK	1	Unmodified	1936.9571	0.95707914	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.28	9	9	3						4	6	3	6	10	99.367	97.705	2;3	1.5196E-40	91472	160511_QHF_FH_JSI12i_1	165.64	133.58			0.79322	0.90934	50.246	23	9	Median	0.75802	0.64209	33.36	5	3	Median	0.62863	0.72788	25.485	3	0	Median	0.92553	0.91715	52.357	6	1	Median	0.96236	1.0002	61.653	9	5	Median	5094300000	2614400000	2480000000	903570000	518450000	385120000	631870000	384240000	247640000	1504400000	661850000	842560000	2054500000	1049800000	1004700000	33147	2381	31348	205016;205017;205018;205019;205020;205021;205022;205023;205024;205025;205026;205027;205028;205029;205030;205031;205032;205033;205034;205035;205036;205037;205038;205039;205040	277064;277065;277066;277067;277068;277069;277070;277071;277072;277073;277074;277075;277076;277077;277078;277079;277080;277081;277082;277083;277084;277085;277086;277087;277088;277089;277090;277091;277092;277093;277094;277095	277074			32	
LPNFGFVVFDDSEPVQR	0	Unmodified	1964.9632	0.96322715	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.207	81.846	2	0.0013307	45945	160513_QHF_FH_JSI11Kac_6	113.25	100.05			0.82176	0.80808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82176	0.80808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43930000	22108000	21822000	0	0	0	0	0	0	43930000	22108000	21822000	0	0	0	33148	5433	31349	205041	277096	277096			1	
LPNFGSHVLTPAEMEAFK	1	Unmodified	1986.9873	0.98733341	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	82.494	81.904	2;3	1.8786E-07	71109	160511_QHF_FH_JSI12i_3	114.55	77.956			0.84108	0.92637	26.481	8	5	Median	0.75921	0.64921	NaN	1	1	Median	0.57098	0.68237	46.694	2	1	Median	0.95394	0.94312	5.9966	2	2	Median	0.95866	0.99029	20.614	3	1	Plateau	1164800000	638180000	526640000	115030000	67884000	47149000	182820000	115500000	67322000	351200000	191940000	159260000	515770000	262860000	252920000	33149	2591	31350	205042;205043;205044;205045;205046;205047;205048;205049	277097;277098;277099;277100;277101;277102;277103;277104;277105;277106;277107;277108;277109;277110	277109			14	
LPNGLVIASLENYSPVSR	0	Unmodified	1928.0367	0.036726442	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	3.69		3	8						1	3	4	4	1	95.641	94.563	2;3	1.0507E-11	85502	160511_QHF_FH_JSI11i_3	142.39	134.48			1.2631	1.1632	14.2	12	5	Median	1.4739	1.197	4.6558	3	0	Median	0.92668	1.0689	4.0753	4	2	Median	1.3014	1.2698	20.456	4	3	Median	1.2551	1.2952	NaN	1	0	Median	744360000	346010000	398350000	110380000	43484000	66892000	363030000	186860000	176160000	224320000	92851000	131470000	46644000	22813000	23831000	33150	1216	31351	205050;205051;205052;205053;205054;205055;205056;205057;205058;205059;205060;205061	277111;277112;277113;277114;277115;277116;277117;277118;277119;277120;277121;277122;277123;277124;277125	277112			15	
LPNGVFTPDFQEFVNK	1	Unmodified	1850.9203	0.9202997	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.573	1	9	5							2	2	6	5	95.822	95.62	2;3	1.9288E-05	85142	160511_QHF_FH_JSI11i_3	87.519	69.155			0.96354	0.96845	18.495	14	2	Median	1.084	0.94692	8.4028	2	0	Median	0.76341	0.92805	19.265	2	0	Median	0.93563	0.96813	26.908	5	0	Median	1.0082	0.96877	13.75	5	2	Median	585560000	291410000	294150000	87365000	43615000	43750000	92683000	51915000	40768000	195300000	94322000	100980000	210210000	101560000	108650000	33151	1453	31352	205062;205063;205064;205065;205066;205067;205068;205069;205070;205071;205072;205073;205074;205075;205076	277126;277127;277128;277129;277130;277131;277132;277133;277134;277135;277136;277137;277138;277139;277140;277141;277142;277143;277144;277145;277146;277147;277148	277129			22	
LPNLGKHEK	2	Acetyl (K)	1076.5978	0.59784335	1017	P12277	CKB	Creatine kinase B-type	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		30.082	20.884	3	0.0082316	12069	160513_QHF_FH_JSI11Kac_6	56.404	40.202			0.0088431	0.00839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0088431	0.00839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51953000	51420000	533070	0	0	0	0	0	0	51953000	51420000	533070	0	0	0	33152	1017	31353	205077	277149	277149	829;830		1	
LPNLTHLNLSGNK	1	Unmodified	1419.7834	0.78341229	3871	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	5	4	3	2	58.801	55.436	2;3	6.4315E-16	45622	160511_QHF_FH_JSI9i_3	135.02	126.13			1.0286	1.0368	23.06	14	2	Median	1.4514	1.1541	26.328	5	0	Median	0.9149	1.0597	31.449	4	1	Median	1.0864	1.0323	14.407	3	1	Median	0.97733	1.0162	0.78784	2	0	Median	18698000000	9130700000	9567800000	6189400000	2449700000	3739700000	3449800000	1919900000	1529900000	4156800000	2055600000	2101200000	4902500000	2705500000	2197000000	33153	3871	31354	205078;205079;205080;205081;205082;205083;205084;205085;205086;205087;205088;205089;205090;205091	277150;277151;277152;277153;277154;277155;277156;277157;277158;277159;277160;277161;277162;277163;277164;277165;277166;277167;277168;277169;277170;277171;277172;277173;277174;277175;277176;277177;277178;277179;277180;277181;277182;277183;277184;277185;277186;277187;277188;277189	277170			40	
LPNQTHPDVPVGDESQAR	0	Unmodified	1958.9446	0.94461697	4889	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	32.362	31.554	3	0.00049774	26775	160511_QHF_FH_JSI11i_2	44.788	28.294			0.84667	0.90647	8.1064	4	0	Median	NaN	NaN	NaN	0	0	Median	0.62132	0.7768	NaN	1	0	Median	0.90671	0.90465	NaN	1	0	Median	0.84667	0.91645	1.2667	2	0	Median	140600000	75178000	65423000	0	0	0	40510000	30310000	10200000	25667000	9690200	15977000	74423000	35177000	39246000	33154	4889	31355	205092;205093;205094;205095	277190;277191;277192	277192			3	
LPNSLAK	1	Unmodified	741.43849	0.43848916	5826				yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.43	59.037	2	0.018161	53346	160511_QHF_FH_JSI10i_1	54.525	1.842	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33155	5826	31356	205096	277193	277193			1	
LPNTYPNSSSPGPGGLGGSVHYATMAR	0	Unmodified	2687.2762	0.27619822	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			59.817	58.287	3	0.017077	48756	160511_QHF_FH_JSI10i_3	28.145	21.114			0.80488	0.94056	15.029	2	2	Median	NaN	NaN	NaN	0	0	Median	0.80488	0.94056	15.029	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52756000	30219000	22537000	0	0	0	52756000	30219000	22537000	0	0	0	0	0	0	33156	4181	31357	205097;205098	277194;277195	277194			2	
LPNVTGSHMHLPFAGDIYSED	0	Unmodified	2299.0579	0.05793217	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	85.345	85.292	3	0.012788	74000	160511_QHF_FH_JSI12i_3	33.688	25.501			0.8917	0.8992	7.9343	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97633	0.90889	11.187	2	2	Median	0.8917	0.8992	NaN	1	1	Median	215690000	116170000	99517000	0	0	0	0	0	0	135260000	69402000	65863000	80422000	46768000	33654000	33157	4189	31358	205099;205100;205101	277196;277197;277198	277198			3	
LPPEEASPYVVDHGESGPLR	0	Unmodified	2148.0487	0.048747692	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	53.794	52.956	3	1.0257E-06	45966	160511_QHF_FH_JSI11i_2	90.22	74.629			1.0368	1.0868	7.0127	6	1	Median	1.3068	1.1106	NaN	1	0	Median	0.8946	1.1043	13.326	2	1	Median	1.0532	1.0441	NaN	1	0	Median	1.0368	1.111	6.1902	2	0	Median	794360000	392600000	401760000	117470000	53401000	64070000	265350000	135480000	129880000	206200000	101830000	104370000	205330000	101890000	103450000	33158	1814	31359	205102;205103;205104;205105;205106;205107;205108;205109	277199;277200;277201;277202;277203;277204;277205;277206;277207;277208;277209;277210;277211;277212;277213;277214	277208			16	
LPPFSYAYTELEAIMYALGVGASIK	1	Unmodified	2703.387	0.38697745	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			104.29	96.825	3	1.5003E-64	54984	160513_QHF_FH_JSI9Kac_6	195.34	178.19			0.93534	0.93067	24.311	2	0	Median	0.9353	0.78368	NaN	1	0	Median	0.93538	1.1052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	518470000	266940000	251530000	137100000	64153000	72948000	381370000	202790000	178590000	0	0	0	0	0	0	33159	1747	31360	205110;205111	277215;277216;277217;277218	277215			4	
LPPFSYAYTELEAIMYALGVGASIKDPK	2	Unmodified	3043.5616	0.56164735	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			101.95	96.23	3;4	1.7964E-08	56857	160513_QHF_FH_JSI10Kac_6	84.683	70.099			0.76137	0.89606	4.2988	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76137	0.89606	4.2988	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269660000	142670000	126980000	0	0	0	269660000	142670000	126980000	0	0	0	0	0	0	33160	1747	31361	205112;205113	277219;277220	277219			2	
LPPGEYILVPSTFEPNK	1	Unmodified	1899.9982	0.99821567	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								2		1	2	89.659	88.978	3	0.00027779	78398	160511_QHF_FH_JSI9i_2	68.257	51.318			0.70416	0.71241	29.096	5	2	Median	0.67621	0.5658	32.585	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0242	1.0146	NaN	1	0	Median	0.66121	0.71113	6.0676	2	1	Median	100190000	56572000	43616000	42277000	21691000	20586000	0	0	0	26677000	12846000	13831000	31235000	22035000	9200000	33161	1122	31362	205114;205115;205116;205117;205118	277221;277222;277223;277224;277225	277225			5	
LPPGFSASSTVEKPSK	2	Unmodified	1630.8566	0.85663681	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			39.285	37.795	3	0.0051369	31430	160511_QHF_FH_JSI10i_3	45.14	26.727			0.90608	0.87691	24.965	2	0	Median	1.2706	1.0462	NaN	1	0	Median	0.64615	0.73501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55177000	30152000	25025000	20989000	12101000	8887200	34188000	18051000	16138000	0	0	0	0	0	0	33162	558	31363	205119;205120;205121	277226;277227	277226			2	
LPPILIIHLK	1	Unmodified	1155.7744	0.77435115	3652	Q8NFA0	USP32	Ubiquitin carboxyl-terminal hydrolase 32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	4	3	3	2	83.818	79.459	3	5.4201E-05	40934	160513_QHF_FH_JSI11Kac_6	84.213	75.992			0.61797	0.66966	39.566	6	6	Median	0.54477	0.46412	53.818	2	2	Median	0.61797	0.72893	13.965	2	2	Median	0.57061	0.5424	NaN	1	1	Median	0.95998	1.009	NaN	1	1	Median	233840000	131690000	102150000	65017000	47260000	17757000	119140000	58115000	61023000	27887000	16933000	10955000	21802000	9382200	12420000	33163	3652	31364	205122;205123;205124;205125;205126;205127;205128;205129;205130;205131;205132;205133	277228;277229;277230;277231;277232;277233;277234;277235;277236;277237;277238;277239	277232			12	
LPPLPLHIR	0	Unmodified	1054.6651	0.66513505	3474	Q8IZ21	PHACTR4	Phosphatase and actin regulator 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.198	62.377	3	0.002445	51284	160511_QHF_FH_JSI9i_3	50.04	34.78			0.66392	0.67805	38.482	4	2	Median	0.91255	0.76567	NaN	1	0	Median	0.52876	0.60046	NaN	1	0	Median	0.38517	0.37126	NaN	1	1	Median	0.83364	0.89654	NaN	1	1	Median	50257000	30223000	20033000	15448000	7680800	7767600	13524000	9159000	4365500	9533400	6838700	2694700	11750000	6544700	5205600	33164	3474	31365	205134;205135;205136;205137	277240;277241;277242;277243;277244	277243			5	
LPPLPLTLALGAFLNHR	0	Unmodified	1842.088	0.087974152	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.605	90.178	3	6.146E-44	49107	160513_QHF_FH_JSI12Kac_6	184	165.16			0.83141	0.83505	13.457	4	0	Median	1.0215	0.89314	NaN	1	0	Median	0.65306	0.78074	NaN	1	0	Median	0.75192	0.7097	NaN	1	0	Median	0.91929	0.95839	NaN	1	0	Median	1346800000	766660000	580160000	317600000	160210000	157400000	687340000	421680000	265670000	219510000	125570000	93940000	122370000	59208000	63159000	33165	754	31366	205138;205139;205140;205141	277245;277246;277247;277248;277249	277248			5	
LPPNTNDEVDEDPTGNK	1	Unmodified	1853.8279	0.82791546	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	30.558	29.989	2;3	6.2004E-07	26381	160511_QHF_FH_JSI9i_1	94.882	88.465			1.1269	1.0807	27.504	9	1	Median	1.4918	1.2331	35.505	2	0	Median	0.90179	1.0807	19.007	3	1	Median	1.2115	1.1584	18.767	2	0	Median	1.4261	1.462	50.602	2	0	Median	775270000	349050000	426220000	173120000	61615000	111500000	236240000	127730000	108520000	160670000	77743000	82922000	205250000	81965000	123280000	33166	2665	31367	205142;205143;205144;205145;205146;205147;205148;205149;205150	277250;277251;277252;277253;277254;277255;277256;277257;277258;277259;277260;277261;277262;277263;277264;277265;277266;277267;277268;277269;277270	277267			21	
LPPPADYNK	1	Unmodified	1013.5182	0.51819605	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.771	22.237	2	0.0098729	19130	160511_QHF_FH_JSI11i_1	50.607	13.586			1.0077	0.87307	6.4242	4	0	Linear	1.1057	0.91898	NaN	1	0	Median	0.78048	0.90872	NaN	1	0	Median	0.85145	0.80399	NaN	1	0	Median	0.78658	0.83882	NaN	1	0	Median	242660000	128630000	114020000	66962000	34939000	32023000	50540000	26142000	24397000	64848000	33408000	31441000	60309000	34146000	26163000	33167	1726	31368	205151;205152;205153;205154	277271	277271			1	
LPPPPDIKK	2	Unmodified	1003.6066	0.60661712	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	28.166	27.615	3	0.0030272	22943	160511_QHF_FH_JSI12i_3	41.399	20.529			1.1063	1.1472	22.452	5	0	Median	1.7725	1.5338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0852	1.0419	13.612	2	0	Median	0.97135	1.0113	23.065	2	0	Median	406590000	180530000	226060000	56211000	24198000	32013000	0	0	0	155360000	66053000	89311000	195010000	90276000	104740000	33168	1725	31369	205155;205156;205157;205158;205159	277272;277273;277274;277275	277275			3	
LPPQDFLDRLSSLDNLK	1	Unmodified	1970.0473	0.047291129	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.69	100.6	3	0.00027486	83233	160511_QHF_FH_JSI10i_3	59.434	37.9			1.0488	1.0211	22.43	4	0	Median	1.06	0.86641	NaN	1	0	Median	1.0378	1.2034	NaN	1	0	Median	1.4303	1.3372	NaN	1	0	Median	0.83474	0.86639	NaN	1	0	Median	399660000	193320000	206340000	108940000	49388000	59553000	123790000	65992000	57795000	117470000	47115000	70355000	49460000	30821000	18639000	33169	2252	31370	205160;205161;205162;205163	277276;277277;277278;277279;277280	277278			5	
LPPSDLGGVPWK	1	Unmodified	1264.6816	0.68157298	3244	Q7RTP6	MICAL3	Protein-methionine sulfoxide oxidase MICAL3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.668							3	6	2	3	3	2	3	79.197	68.965	2;3	0.016261	34330	160513_QHF_FH_JSI10Kac_5	23.676	18.782			0.98244	0.98652	27.013	11	1	Median	1.1612	0.98652	45.03	3	0	Median	0.78054	0.79455	20.353	3	1	Plateau	0.87709	0.87319	32.111	2	0	Median	0.98244	1.0267	6.9035	3	0	Median	3617300000	1696700000	1920600000	1050200000	425900000	624310000	922590000	473150000	449440000	35024000	14802000	20222000	1609500000	782860000	826630000	33170	3244	31371	205164;205165;205166;205167;205168;205169;205170;205171;205172;205173;205174	277281;277282;277283;277284;277285;277286;277287	277285			7	
LPPTSLKPDTFR	1	Unmodified	1370.7558	0.75580056	4600	Q9GZQ3	COMMD5	COMM domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				46.316	44.706	3	0.043519	36450	160511_QHF_FH_JSI9i_3	27.862	7.0214			1.0247	0.83941	NaN	1	0	Median	1.0247	0.83941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47153000	21741000	25412000	47153000	21741000	25412000	0	0	0	0	0	0	0	0	0	33171	4600	31372	205175	277288	277288			1	
LPPVFKK	2	Unmodified	827.52691	0.52691024	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	2	3	4	26.933	26.432	3	0.0093115	21290	160511_QHF_FH_JSI9i_3	44.692	31.704			1.0116	0.95359	80.012	11	7	Median	1.4118	1.1513	37.857	2	1	Median	0.61491	0.71164	72.951	2	1	Median	1.3682	1.2995	81.718	3	2	Plateau	0.84403	0.85494	115.32	4	3	Median	2079600000	898710000	1180800000	440270000	159930000	280340000	431770000	199920000	231850000	395760000	190300000	205470000	811750000	348560000	463190000	33172	1545	31373	205176;205177;205178;205179;205180;205181;205182;205183;205184;205185;205186	277289;277290;277291;277292;277293;277294;277295;277296;277297;277298;277299;277300;277301;277302;277303;277304;277305;277306;277307;277308;277309;277310	277300			22	
LPPVLANLMGSMGAGK	1	Unmodified	1554.8262	0.82620508	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	101.46	101.33	2;3	5.704E-06	88115	160511_QHF_FH_JSI12i_3	109.83	93.062			0.97128	0.99073	14.62	5	0	Median	1.2011	0.96948	5.7955	2	0	Median	0.81069	0.92534	27.991	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96557	0.99073	NaN	1	0	Median	421720000	198450000	223270000	167930000	70287000	97646000	155720000	82692000	73028000	0	0	0	98064000	45470000	52594000	33173	4206	31374	205187;205188;205189;205190;205191	277311;277312;277313;277314	277314			1	
LPPVLLVHLK	1	Unmodified	1127.7431	0.74305102	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.58		1	6						7	2	4	5	3	75.303	70.699	3	1.8739E-05	37537	160513_QHF_FH_JSI11Kac_6	93.649	20.721			0.86184	0.81776	25.885	8	8	Median	0.86184	0.71623	1.5032	2	2	Median	0.84705	1.0144	35.073	2	2	Median	0.86465	0.81714	5.6701	2	2	Median	1.0552	1.0825	35.068	2	2	Median	962080000	484680000	477400000	233500000	118510000	114990000	218920000	109860000	109060000	268720000	136080000	132630000	240940000	120230000	120720000	33174	1501	31375	205192;205193;205194;205195;205196;205197;205198;205199;205200;205201;205202;205203;205204;205205	277315;277316;277317;277318;277319;277320;277321;277322;277323;277324;277325;277326;277327;277328;277329;277330;277331;277332;277333	277322			19	
LPPVLSHPIFDNR	0	Unmodified	1503.8198	0.8197978	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	64.788	64.788	3	0.0057183	53409	160511_QHF_FH_JSI9i_3	43.813	31.453			0.68384	0.66229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68384	0.66229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64097000	43094000	21003000	0	0	0	0	0	0	64097000	43094000	21003000	0	0	0	33175	2214	31376	205206;205207;205208	277334;277335;277336;277337	277336			4	
LPPVLVLHLK	1	Unmodified	1127.7431	0.74305102	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.65		2	4						5	2	3	4	2	76.108	71.934	3	2.0483E-05	37847	160513_QHF_FH_JSI11Kac_6	96.331	10.601			0.80168	0.83545	10.401	9	9	Median	1.0409	0.86646	7.6255	2	2	Median	0.79891	0.93282	11.924	3	3	Plateau	1.0148	0.94419	13.574	2	2	Median	0.75047	0.78889	2.4723	2	2	Median	1750600000	917680000	832910000	390940000	195080000	195860000	782810000	439620000	343190000	293580000	128060000	165520000	283250000	154920000	128330000	33176	2567	31377	205209;205210;205211;205212;205213;205214;205215;205216;205217;205218;205219	277338;277339;277340;277341;277342;277343;277344;277345;277346;277347;277348;277349;277350;277351;277352;277353;277354	277343			17	
LPQFGISTPGSDLHVNAK	1	Unmodified	1879.9792	0.97921156	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	3	4	3	67.721	65.675	2;3	7.8809E-09	56969	160511_QHF_FH_JSI12i_3	128.59	117.33			0.9899	0.93513	6.1616	13	2	Median	1.1135	0.93513	1.4889	3	0	Median	0.74579	0.9171	6.2726	3	2	Plateau	0.96903	0.92464	5.3433	4	0	Median	1.0183	1.015	6.2977	3	0	Median	3431300000	1661400000	1769900000	278140000	132310000	145830000	490610000	259190000	231420000	1075500000	443100000	632450000	1587000000	826840000	760200000	33177	2286	31378	205220;205221;205222;205223;205224;205225;205226;205227;205228;205229;205230;205231;205232	277355;277356;277357;277358;277359;277360;277361;277362;277363;277364;277365;277366;277367;277368;277369;277370;277371;277372	277370			18	
LPQGLQYALNVPISVK	1	Unmodified	1738.9982	0.99815609	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.92	92.472	3	0.019493	81288	160511_QHF_FH_JSI11i_2	37.092	29.683			0.89373	0.87097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89373	0.87097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6191500	3306000	2885500	0	0	0	0	0	0	6191500	3306000	2885500	0	0	0	33178	5482	31379	205233	277373	277373			1	
LPQLPITNFSR	0	Unmodified	1284.719	0.71902112	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	76.503	75.693	2	0.00033288	63524	160511_QHF_FH_JSI10i_3	74.92	57.68			0.99853	1.0334	6.2476	8	1	Median	1.3382	1.0914	8.4191	2	0	Median	0.87881	1.0359	5.6113	2	0	Median	1.0569	1.0417	0.41577	2	0	Median	0.89762	0.96648	4.4776	2	1	Median	5703200000	2818400000	2884800000	1312700000	569730000	742960000	1348700000	706610000	642050000	1685300000	807330000	877920000	1356500000	734730000	621820000	33179	1192	31380	205234;205235;205236;205237;205238;205239;205240;205241	277374;277375;277376;277377;277378;277379;277380;277381;277382;277383;277384;277385;277386;277387;277388	277378			15	
LPQLVGVSTPLQGGSNSAAAIGQSSGELR	0	Unmodified	2793.4621	0.46208474	1072	P15291	B4GALT1	Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.857	84.264	3	0.019758	74133	160511_QHF_FH_JSI11i_2	24.618	20.891			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8831200	8831200	0	0	0	0	0	0	0	8831200	8831200	0	0	0	0	33180	1072	31381	205242	277389	277389			1	
LPQPPEGQTYNN	0	Unmodified	1356.631	0.63099397	2715	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.87	8			5						2	2	4	5	38.666	34.968	2	2.0362E-06	31354	160511_QHF_FH_JSI10i_1	120.09	109.26			1.0545	1.1391	37.918	8	4	Median	0.57416	0.47498	NaN	1	1	Median	1.0857	1.2933	8.3637	2	1	Median	1.404	1.3491	33.507	2	1	Median	0.9696	1.0179	15.349	3	1	Median	1754900000	929990000	824950000	558770000	385520000	173250000	613190000	305030000	308160000	304320000	104360000	199960000	278650000	135080000	143580000	33181	2715	31382	205243;205244;205245;205246;205247;205248;205249;205250;205251;205252;205253;205254;205255	277390;277391;277392;277393;277394;277395;277396;277397;277398;277399;277400;277401;277402;277403;277404;277405;277406;277407	277400			17	
LPQPPSHR	0	Unmodified	930.50355	0.50354903	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			11.423	10.751	3	0.0050911	8241	160511_QHF_FH_JSI10i_3	44.753	10.664			1.0551	1.0392	5.2017	2	0	Median	1.3273	1.0781	NaN	1	0	Median	0.83869	1.0016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225280000	110380000	114900000	133190000	54863000	78327000	92090000	55514000	36576000	0	0	0	0	0	0	33182	2517	31383	205256;205257	277408;277409	277408			2	
LPQPVQPDPVSHCK	1	Unmodified	1600.8032	0.80316145	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	33.08	32.188	3	0.0074933	27332	160511_QHF_FH_JSI12i_2	47.545	40.506			0.84007	0.86211	75.181	3	3	Median	NaN	NaN	NaN	0	0	Median	0.32286	0.39802	NaN	1	1	Median	0.84007	0.86211	NaN	1	1	Median	1.622	1.7899	NaN	1	1	Median	162220000	86653000	75565000	0	0	0	19059000	14894000	4165300	97189000	51709000	45480000	45970000	20051000	25919000	33183	841	31384	205258;205259;205260;205261	277410;277411;277412;277413	277410			4	
LPQQDHTTTTDSEMEEPYLQESK	1	Unmodified	2706.1967	0.19667007	3443	Q8IXK0	PHC2	Polyhomeotic-like protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	45.35	44.812	3	0.00010716	40250	160511_QHF_FH_JSI10i_1	54.223	46.689			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33184	3443	31385	205262;205263	277414;277415	277415			2	
LPQQSHSAFGATSSSSGFGK	1	Unmodified	1979.9337	0.93371793	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	3	3	2	1	36.933	33.344	3	2.2278E-25	29128	160511_QHF_FH_JSI11i_3	144.57	121.25			0.9483	0.93144	10.728	9	1	Median	1.193	1.0365	12.881	3	0	Median	0.73964	0.90549	6.5255	3	1	Plateau	1.0541	1.0112	11.618	2	0	Median	0.9483	0.95467	NaN	1	0	Median	1047900000	498630000	549270000	221900000	93457000	128440000	342840000	183110000	159740000	402160000	182100000	220060000	81002000	39967000	41034000	33185	3377	31386	205264;205265;205266;205267;205268;205269;205270;205271;205272	277416;277417;277418;277419;277420;277421;277422;277423;277424;277425;277426;277427;277428;277429;277430;277431;277432;277433	277417			18	
LPQSQLSHQDLQLVK	1	Unmodified	1732.9472	0.94718315	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	49.738	49.018	3	0.0025596	41735	160511_QHF_FH_JSI12i_3	46.319	34.173			1.3486	1.5289	29.498	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0389	1.0388	NaN	1	0	Median	1.5818	1.6836	13.631	2	1	Median	151530000	59180000	92353000	0	0	0	0	0	0	40837000	16374000	24463000	110700000	42806000	67890000	33186	2669	31387	205273;205274;205275	277434;277435;277436	277436			3	
LPQTSDDEK	1	Unmodified	1031.4771	0.47711909	4606	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.4737	8.1243	2	0.0019951	5987	160511_QHF_FH_JSI12i_1	66.621	39.097			0.90403	0.94547	5.7569	4	0	Median	1.1669	0.96043	NaN	1	0	Median	0.85637	1.0226	NaN	1	0	Median	0.95434	0.93074	NaN	1	0	Median	0.8475	0.89186	NaN	1	0	Median	931820000	465030000	466790000	219080000	98148000	120930000	264060000	131220000	132840000	220520000	104450000	116070000	228160000	131210000	96946000	33187	4606	31388	205276;205277;205278;205279	277437;277438;277439;277440;277441;277442;277443;277444	277440			8	
LPQVAEEISGPLTSANK	1	Unmodified	1752.9258	0.92577901	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		71.294	70.854	2;3	0.00052558	64124	160511_QHF_FH_JSI10i_1	54.292	47.09			1.0979	0.82377	12.049	3	0	Plateau	1.1377	0.94948	NaN	1	0	Median	0.70406	0.82377	NaN	1	0	Median	1.0979	1.0468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93244000	57165000	36079000	23535000	13536000	9999000	48038000	31459000	16579000	21670000	12170000	9500800	0	0	0	33188	590	31389	205280;205281;205282;205283	277445;277446;277447;277448	277446			4	
LPQVLAHLGALK	1	Unmodified	1258.7761	0.77614207	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	70.346	69.63	3	0.00022628	60388	160511_QHF_FH_JSI12i_3	77.062	64.486			0.86511	1.0295	90.012	7	6	Median	1.3063	1.0716	122.84	2	2	Median	0.86511	1.0295	NaN	1	0	Median	1.359	1.2608	139.53	2	2	Median	0.97347	0.99485	115.88	2	2	Median	539310000	270860000	268450000	131560000	55593000	75963000	55321000	34514000	20807000	130890000	68797000	62093000	221540000	111960000	109580000	33189	2952	31390	205284;205285;205286;205287;205288;205289;205290	277449;277450;277451;277452;277453;277454;277455;277456;277457;277458	277458			10	
LPREDGMVPFVFVGTK	1	Unmodified	1790.9389	0.93892665	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	83.52	82.861	3	0.00010821	69445	160511_QHF_FH_JSI10i_3	73.464	57.326			0.96282	1.1495	16.021	6	3	Median	1.1625	0.98019	27.173	2	1	Median	0.96282	1.1499	2.8258	2	0	Median	1.2554	1.1724	NaN	1	1	Median	0.9339	0.92635	NaN	1	1	Median	678610000	294090000	384520000	81072000	33183000	47889000	156950000	77563000	79391000	224910000	87729000	137180000	215670000	95613000	120060000	33190	1725	31391	205291;205292;205293;205294;205295;205296	277459;277460;277461;277462;277463;277464;277465;277466	277462			8	
LPREPSNPER	0	Unmodified	1193.6153	0.61528433	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			12.096	11.432	3	0.00021757	8881	160511_QHF_FH_JSI9i_3	58.592	5.265			0.87702	0.87639	18.443	4	1	Median	1.126	0.93805	21.622	2	1	Median	0.69255	0.82844	19.963	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	843770000	416710000	427060000	496820000	218830000	278000000	346950000	197880000	149070000	0	0	0	0	0	0	33191	1237	31392	205297;205298;205299;205300	277467;277468;277469;277470;277471;277472	277468			6	
LPRPPPPEMPESLK	1	Unmodified	1586.849	0.84904901	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	52.439	51.546	3	0.00019695	42315	160511_QHF_FH_JSI9i_3	71.344	61.292			0.95729	0.88076	19.944	6	0	Median	1.1738	0.98289	31.315	2	0	Median	0.78756	0.94863	27.698	2	0	Median	1.0151	0.95032	NaN	1	0	Median	0.79918	0.81629	NaN	1	0	Median	1016400000	504680000	511670000	402830000	181440000	221390000	355880000	191240000	164640000	216200000	106750000	109440000	41446000	25248000	16198000	33192	2146	31393	205301;205302;205303;205304;205305;205306	277473;277474;277475;277476;277477;277478;277479;277480;277481;277482;277483;277484;277485;277486	277481			14	
LPRPPPPEMPESLKK	2	Unmodified	1714.944	0.94401203	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		45.599	44.542	4	0.00031538	36419	160511_QHF_FH_JSI9i_3	51.888	45.307			0.85691	0.78549	8.5445	3	0	Median	1.0105	0.80933	NaN	1	0	Median	0.59509	0.68921	NaN	1	0	Median	0.85691	0.78549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172940000	91161000	81783000	54166000	24163000	30003000	65545000	38539000	27007000	53233000	28460000	24773000	0	0	0	33193	2146	31394	205307;205308;205309	277487;277488;277489	277489			3	
LPRVVTANR	0	Unmodified	1024.6142	0.61416212	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.6642	9.7618	3	0.017969	7083	160511_QHF_FH_JSI12i_3	31.074	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33194	4267	31395	205310	277490	277490			1	
LPSAQTPNGTDYVASGK	1	Unmodified	1704.8319	0.83187862	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.752	38.131	2	0.00019824	34106	160511_QHF_FH_JSI10i_1	71.241	55.611			0.98228	0.9875	2.5921	4	0	Median	1.1784	0.98022	NaN	1	0	Median	0.83612	0.99483	NaN	1	0	Median	0.99497	0.94354	NaN	1	0	Median	0.96975	0.99868	NaN	1	0	Median	236020000	112650000	123360000	45352000	23763000	21589000	60091000	32646000	27445000	65731000	26109000	39622000	64843000	30134000	34709000	33195	5646	31396	205311;205312;205313;205314	277491;277492;277493;277494;277495	277494			5	
LPSDSER	0	Unmodified	802.3821	0.38209649	4256	Q96T58	SPEN	Msx2-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	5.5602	5.2807	2	0.02555	3151	160511_QHF_FH_JSI11i_1	54.525	0			1.0407	1.1108	14.017	4	0	Median	NaN	NaN	NaN	0	0	Median	1.065	1.2761	10.444	2	0	Median	1.0569	1.041	NaN	1	0	Median	0.9491	1.011	NaN	1	0	Median	3990500000	1935600000	2054900000	0	0	0	1236900000	605750000	631130000	1467700000	701470000	766240000	1285900000	628370000	657550000	33196	4256	31397	205315;205316;205317;205318	277496	277496			1	
LPSDYRDSEELLQIFSSVHK	1	Unmodified	2362.1805	0.18049015	4859	Q9HCJ3	RAVER2	Ribonucleoprotein PTB-binding 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	95.108	95.112	4	5.3983E-05	84702	160511_QHF_FH_JSI11i_3	56.936	48.648			0.73052	0.73103	9.4295	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84878	0.78144	NaN	1	0	Median	0.62874	0.68388	NaN	1	1	Median	29227000	18635000	10592000	0	0	0	0	0	0	20582000	12010000	8572300	8645200	6625200	2020000	33197	4859	31398	205319;205320	277497;277498;277499	277498			3	
LPSEGPRPAHVVVGDVLQAADVDK	1	Unmodified	2468.3023	0.30233662	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.92	0.276		1	11							3	7	2		71.954	70.816	3;4	1.9221E-08	59469	160511_QHF_FH_JSI10i_3	71.651	53.113			0.78274	0.89798	16.543	11	6	Median	1.2962	1.0379	9.7852	3	1	Plateau	0.73929	0.85836	8.7756	6	4	Median	0.90838	0.86269	22.491	2	1	Median	NaN	NaN	NaN	0	0	Median	608380000	307440000	300940000	156950000	56343000	100600000	330890000	189400000	141490000	120540000	61697000	58845000	0	0	0	33198	1334	31399	205321;205322;205323;205324;205325;205326;205327;205328;205329;205330;205331;205332	277500;277501;277502;277503;277504;277505;277506;277507;277508;277509;277510;277511;277512;277513;277514;277515;277516;277517	277506			18	
LPSFELLHK	1	Unmodified	1082.6124	0.61243078	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	2	4	3	62.838	59.925	2;3	3.8533E-07	52778	160511_QHF_FH_JSI9i_2	131.44	117.23			0.94332	0.9461	7.265	12	0	Median	1.2456	1.0329	12.199	3	0	Median	0.77692	0.91879	5.5338	2	0	Median	0.96503	0.94252	6.4051	4	0	Median	0.95729	0.96053	5.3979	3	0	Plateau	4340700000	2078200000	2262400000	554150000	236540000	317600000	797900000	423940000	373960000	1489100000	706700000	782420000	1499500000	711060000	788440000	33199	2734	31400	205333;205334;205335;205336;205337;205338;205339;205340;205341;205342;205343;205344	277518;277519;277520;277521;277522;277523;277524;277525;277526;277527;277528;277529;277530;277531;277532;277533;277534;277535;277536;277537;277538;277539;277540;277541;277542;277543;277544;277545;277546;277547;277548;277549;277550;277551	277539			34	
LPSGEDYNLK	1	Unmodified	1134.5557	0.55570376	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	33.4	32.676	2	0.012816	28675	160511_QHF_FH_JSI9i_1	44.719	29.077			0.8462	0.95175	24.133	3	0	Median	0.78875	0.64668	NaN	1	0	Median	0.8462	1.0078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92081	0.95175	NaN	1	0	Median	423660000	237920000	185750000	123280000	72466000	50812000	182170000	107240000	74935000	0	0	0	118210000	58212000	59999000	33200	5548	31401	205345;205346;205347	277552;277553;277554;277555	277555			4	
LPSGLGCSTVLSPEGSAQFAAQIFGLSNHLVWSK	1	Unmodified	3557.7977	0.79768873	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.936	89.516	3;4	0	50703	160513_QHF_FH_JSI11Kac_6	362.34	347.75			0.86773	0.95791	31.257	8	0	Median	1.0833	0.91263	29.708	2	0	Median	0.94214	1.1212	11.995	2	0	Median	0.64738	0.6123	12.789	2	0	Median	1.0442	1.102	30.085	2	0	Median	2474300000	1331000000	1143300000	314750000	164300000	150460000	915780000	530450000	385330000	747710000	436320000	311390000	496060000	199900000	296150000	33201	1206	31402	205348;205349;205350;205351;205352;205353;205354;205355	277556;277557;277558;277559;277560;277561;277562;277563;277564;277565;277566	277558			11	
LPSGNHMK	1	Unmodified	882.43817	0.43817159	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	6.0585	5.8276	2;3	0.0013507	3665	160511_QHF_FH_JSI11i_3	57.047	24.155			0.93093	0.94755	12.647	8	0	Median	1.3657	1.1396	3.2478	2	0	Median	0.87299	1.0168	15.814	2	0	Median	0.96843	0.93002	7.816	2	0	Median	0.86736	0.87927	5.4013	2	0	Median	1820900000	957450000	863490000	107610000	47467000	60143000	237190000	114660000	122530000	599800000	305250000	294550000	876340000	490070000	386270000	33202	1554	31403	205356;205357;205358;205359;205360;205361;205362;205363	277567;277568;277569;277570;277571;277572;277573	277567			7	
LPSGVFSLEFQDFVNK	1	Unmodified	1825.9251	0.92505073	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			4									1	3	101.41	101.42	2;3	3.7849E-22	88096	160511_QHF_FH_JSI12i_3	128.95	121.82			1.1078	1.1174	16.539	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6023	1.5112	NaN	1	0	Median	1.075	1.072	5.175	3	2	Median	818510000	397510000	420990000	0	0	0	0	0	0	75627000	26354000	49273000	742880000	371160000	371720000	33203	2191	31404	205364;205365;205366;205367	277574;277575;277576	277574			3	
LPSHWLK	1	Unmodified	879.49667	0.49667274	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			30.979	29.596	3	0.0098908	24076	160511_QHF_FH_JSI9i_3	46.426	35.553			1.063	1.0262	19.163	2	0	Median	1.1003	0.89613	NaN	1	0	Median	1.027	1.1751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120450000	54176000	66277000	60175000	26466000	33709000	60278000	27710000	32568000	0	0	0	0	0	0	33204	3318	31405	205368;205369	277577	277577			1	
LPSIPLVPVSAQK	1	Unmodified	1347.8126	0.81258715	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	3	2	3	79.883	79.291	2;3	0.0022886	72136	160511_QHF_FH_JSI11i_1	36.944	33.757			1.0843	1.0847	11.295	10	1	Median	1.3349	1.0728	12.333	3	1	Plateau	0.83356	0.94411	0.60198	2	0	Median	1.0934	1.0763	2.5842	2	0	Median	1.0674	1.0919	1.6535	3	0	Median	348320000	168460000	179860000	80353000	30971000	49383000	118950000	65931000	53015000	48209000	24462000	23747000	100820000	47094000	53721000	33205	2707	31406	205370;205371;205372;205373;205374;205375;205376;205377;205378;205379;205380	277578;277579;277580;277581;277582;277583;277584;277585;277586;277587;277588	277578			11	
LPSLFNPGNPDAFHEK	1	Unmodified	1781.8737	0.87368386	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	68.602	68.453	3	0.00022094	59175	160511_QHF_FH_JSI12i_3	59.9	53.996			0.87879	0.84499	4.0191	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89936	0.82132	NaN	1	0	Median	0.8587	0.86935	NaN	1	0	Median	188080000	106800000	81285000	0	0	0	0	0	0	92244000	53948000	38295000	95839000	52849000	42989000	33206	2572	31407	205381;205382	277589;277590;277591	277591			3	
LPSLGAGFSQGLK	1	Unmodified	1273.703	0.7030367	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.469	66.652	2	0.00054065	59226	160511_QHF_FH_JSI11i_3	69.721	51.281			1.0561	1.122	7.9168	4	0	Median	1.3764	1.1318	NaN	1	0	Median	0.97953	1.1344	NaN	1	0	Median	1.0389	0.96213	NaN	1	0	Median	1.0736	1.1122	NaN	1	0	Median	1065500000	521460000	544010000	98606000	38208000	60398000	117240000	46435000	70801000	337240000	172100000	165140000	512390000	264720000	247670000	33207	3483	31408	205383;205384;205385;205386	277592;277593;277594;277595	277592			4	
LPSSVFASEFEEDVGLLNK	1	Unmodified	2080.0365	0.036451671	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.49	101.31	3	0.035963	87212	160511_QHF_FH_JSI12i_2	28.488	20.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58956000	0	58956000	0	0	0	0	0	0	0	0	0	58956000	0	58956000	33208	4085	31409	205387	277596	277596			1	
LPSTGEGTQFYLFENVDNAQQFK	1	Unmodified	2632.2445	0.24454697	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	93.499	93.081	3	3.2764E-11	84500	160511_QHF_FH_JSI10i_1	102.48	99.757			0.86074	0.96471	15.703	8	1	Median	0.97093	0.80674	29.163	2	0	Median	0.84482	1.0321	5.445	2	1	Median	0.84049	0.83482	4.058	2	0	Median	0.87903	0.96471	2.7922	2	0	Median	307070000	151980000	155090000	67870000	34285000	33585000	98334000	42027000	56307000	61417000	33533000	27884000	79449000	42135000	37313000	33209	1355	31410	205388;205389;205390;205391;205392;205393;205394;205395	277597;277598;277599;277600;277601;277602;277603;277604;277605;277606;277607;277608;277609	277604			13	
LPSVALLLNDLKK	2	Unmodified	1422.881	0.88100107	4789	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	1	By MS/MS				3	0			3							3				98.466	98.129	3	0.022959	79576	160511_QHF_FH_JSI9i_3	32.068	27.153			0.9566	0.82654	68.21	2	2	Median	0.9566	0.82654	68.21	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12135000	7816300	4318900	12135000	7816300	4318900	0	0	0	0	0	0	0	0	0	33210	4789	31411	205396;205397;205398	277610;277611;277612	277612			3	
LPSVPSTHLPAGPAPK	1	Unmodified	1567.8722	0.8722273	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	3	1	50.897	50.075	3	2.1001E-05	42954	160511_QHF_FH_JSI12i_3	67.416	55.803			1.0048	0.95701	8.98	9	4	Median	1.1423	0.95999	0.4385	2	0	Median	0.66078	0.8067	10.179	3	2	Plateau	1.0048	0.94891	6.7058	3	2	Median	1.0583	1.1103	NaN	1	0	Median	1417500000	732620000	684850000	147160000	68771000	78389000	291170000	170120000	121040000	432100000	232430000	199670000	547040000	261290000	285750000	33211	4534	31412	205399;205400;205401;205402;205403;205404;205405;205406;205407	277613;277614;277615;277616;277617;277618;277619;277620;277621;277622;277623;277624;277625;277626;277627;277628	277628			16	
LPSYFVRPDLGPK	1	Unmodified	1487.8136	0.81364979	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.376	62.372	3	0.00084057	55471	160511_QHF_FH_JSI11i_3	66.533	52.853			0.77166	0.83747	6.4443	3	1	Plateau	1.0335	0.83747	NaN	1	0	Median	0.6832	0.82655	NaN	1	0	Median	0.77166	0.74455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	353220000	208080000	145150000	97048000	49744000	47303000	84780000	47237000	37543000	171400000	111100000	60301000	0	0	0	33212	3239	31413	205408;205409;205410	277629;277630	277629			2	
LPTFGAPEQLVDLK	1	Unmodified	1526.8344	0.83444481	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	89.301	88.835	2	0.0017929	78243	160511_QHF_FH_JSI11i_2	60.255	47.299			0.97598	0.99614	5.0277	9	0	Median	1.204	1.01	1.9577	2	0	Median	0.85006	0.98344	1.5479	3	0	Plateau	1.0012	0.99677	7.0445	2	0	Median	0.99737	1.085	0.12333	2	0	Median	836100000	404980000	431110000	146030000	57263000	88767000	273010000	150600000	122420000	261310000	119150000	142160000	155740000	77976000	77768000	33213	2525	31414	205411;205412;205413;205414;205415;205416;205417;205418;205419	277631;277632;277633;277634	277634			4	
LPTGAQQHSILLLLNR	0	Unmodified	1773.0261	0.026102177	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	78.375	70.101	3	0.0076929	36786	160513_QHF_FH_JSI12Kac_6	40.856	29.75			1.043	0.98648	12.542	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.97804	1.1598	NaN	1	1	Median	1.0503	0.98648	NaN	1	0	Median	0.85111	0.90604	NaN	1	0	Median	390950000	196840000	194110000	0	0	0	205170000	101190000	103970000	140200000	72109000	68094000	45578000	23539000	22039000	33214	2305	31415	205420;205421;205422	277635;277636	277635			2	
LPTGINPLTLHIMR	0	Unmodified	1574.8967	0.89666791	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS			By matching	3	0			2							1			1	81.551	80.782	3	0.00094178	66524	160511_QHF_FH_JSI9i_3	55.213	42.335			1.0098	0.91948	8.7358	2	0	Median	1.189	0.97807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85768	0.8644	NaN	1	0	Median	218530000	103710000	114820000	136310000	62410000	73901000	0	0	0	0	0	0	82221000	41300000	40921000	33215	2902	31416	205423;205424	277637	277637			1	
LPTGINPLTLHIMR	0	Oxidation (M)	1590.8916	0.89158253	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				72.826	71.349	3	0.032602	58675	160511_QHF_FH_JSI9i_3	35.35	23.184			1.1237	0.91119	NaN	1	1	Median	1.1237	0.91119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26003000	9706700	16296000	26003000	9706700	16296000	0	0	0	0	0	0	0	0	0	33216	2902	31416	205425	277638	277638			1	
LPTGQISGPEIK	1	Unmodified	1238.6871	0.68705229	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	3	2	3	45.747	44.938	2;3	0.0028699	39884	160511_QHF_FH_JSI9i_1	56.359	33.619			1.0168	1.0364	15.646	11	1	Median	1.1808	0.96214	24.361	3	0	Median	0.85758	0.9747	15.283	3	0	Median	1.1492	1.1456	14.156	2	0	Median	1.0168	1.0876	10.066	3	1	Median	1762500000	865940000	896560000	377120000	185780000	191330000	417310000	217830000	199480000	513030000	254270000	258770000	455040000	208060000	246980000	33217	2286	31417	205426;205427;205428;205429;205430;205431;205432;205433;205434;205435;205436	277639;277640;277641;277642;277643;277644;277645;277646;277647	277644			9	
LPTGYYFGASAGTGDLSDNHDIISMK	1	Unmodified	2729.2643	0.26429613	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.853	4	3	4							2	2	4	3	82.715	82.124	3	2.1179E-58	71417	160511_QHF_FH_JSI12i_3	200.3	200.3			1.0237	0.98167	16.505	11	2	Median	0.9371	0.77904	16.045	2	0	Median	0.76222	0.87829	12.208	2	0	Median	1.1465	1.1199	8.7186	4	2	Median	1.0079	1.1081	11.245	3	0	Plateau	1959500000	947110000	1012400000	180820000	89483000	91340000	83452000	52996000	30456000	774960000	355590000	419370000	920230000	449030000	471200000	33218	2326	31418	205437;205438;205439;205440;205441;205442;205443;205444;205445;205446;205447	277648;277649;277650;277651;277652;277653;277654;277655;277656;277657;277658;277659;277660;277661;277662;277663;277664;277665;277666;277667;277668;277669;277670;277671;277672;277673;277674;277675	277675			28	
LPTGYYFGASAGTGDLSDNHDIISMK	1	Oxidation (M)	2745.2592	0.25921075	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	73.897	73.752	3	9.0344E-10	64151	160511_QHF_FH_JSI12i_3	74.905	70.923			0.91791	0.90426	17.221	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82789	0.80059	NaN	1	0	Median	1.0177	1.0214	NaN	1	0	Median	168380000	79804000	88577000	0	0	0	0	0	0	62324000	27959000	34365000	106060000	51845000	54212000	33219	2326	31418	205448;205449	277676;277677	277677		1919	1	
LPTISQR	0	Unmodified	813.47085	0.47085192	2662	Q15388	TOMM20	Mitochondrial import receptor subunit TOM20 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.573	20.574	2	0.045601	16798	160511_QHF_FH_JSI12i_3	44.611	0			0.93668	0.93423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93668	0.93423	NaN	1	0	Median	872620000	454050000	418570000	0	0	0	0	0	0	0	0	0	872620000	454050000	418570000	33220	2662	31419	205450	277678	277678			1	
LPTPVLLPYKPQVIR	1	Unmodified	1733.0604	0.060362418	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				81.014	79.673	3	0.014616	65553	160511_QHF_FH_JSI9i_3	40.025	28.754			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33221	4258	31420	205451	277679	277679			1	
LPTSSKPPGAVPSNALTNPAPSK	2	Unmodified	2230.1957	0.19574628	3265	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	46.606	45.712	3	1.0405E-05	40610	160511_QHF_FH_JSI11i_3	58.92	30.838			0.95922	0.93218	15.369	5	0	Median	1.0393	0.88775	6.9068	2	0	Median	0.83228	0.96102	NaN	1	0	Median	0.91861	0.86971	NaN	1	0	Median	1.2161	1.2453	NaN	1	0	Median	322930000	160530000	162400000	64318000	32547000	31771000	66576000	38279000	28298000	125320000	60812000	64505000	66723000	28892000	37831000	33222	3265	31421	205452;205453;205454;205455;205456	277680;277681;277682;277683;277684;277685;277686;277687;277688;277689;277690;277691;277692	277683			13	
LPTVPLSGMYNK	1	Unmodified	1318.6955	0.69550848	175	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	66.832	66.131	2	2.4961E-07	58113	160511_QHF_FH_JSI9i_2	130.66	111.3			0.91554	0.90007	13.472	9	1	Median	1.0209	0.87352	10.478	2	1	Median	0.65956	0.78567	5.5273	2	0	Median	0.8628	0.86398	5.7888	2	0	Median	0.91554	1.0152	11.166	3	0	Plateau	1071100000	562430000	508710000	189720000	96842000	92877000	238760000	149170000	89596000	395650000	197950000	197700000	247010000	118480000	128540000	33223	175	31422	205457;205458;205459;205460;205461;205462;205463;205464;205465	277693;277694;277695;277696;277697;277698;277699;277700;277701	277697			9	
LPVDLAEELGHR	0	Unmodified	1347.7147	0.71466402	1547	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	60.967	59.931	3	4.5286E-05	51553	160511_QHF_FH_JSI12i_2	66.989	58.579			0.8695	0.97406	8.1005	5	1	Median	1.0361	0.88179	NaN	1	0	Median	0.7583	0.90003	11.179	2	1	Median	0.98536	1.0076	NaN	1	0	Median	0.8695	0.97634	NaN	1	0	Median	504630000	284850000	219770000	83825000	45278000	38547000	134780000	72649000	62129000	191870000	105460000	86409000	94156000	61466000	32691000	33224	1547	31423	205466;205467;205468;205469;205470	277702;277703;277704;277705;277706	277702			2	
LPVDYYGIPFAAPTALASR	0	Unmodified	2021.0622	0.062212911	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.17	101.05	2	0.00030929	88733	160511_QHF_FH_JSI11i_2	58.116	43.858			0.71665	0.72893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71665	0.72893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98113000	55635000	42478000	0	0	0	0	0	0	98113000	55635000	42478000	0	0	0	33225	2950	31424	205471	277707	277707			1	
LPVEEAYK	1	Unmodified	947.4964	0.49639797	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.33	0.471	2	1								1	1	1		28.664	28.143	2	0.054003	24848	160511_QHF_FH_JSI11i_1	36.395	18.36			0.62923	0.71285	28.815	3	0	Plateau	0.5081	0.42876	NaN	1	0	Median	0.51233	0.59974	NaN	1	0	Median	0.77281	0.76084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	421400000	241250000	180150000	67279000	52603000	14675000	160380000	91193000	69186000	193740000	97456000	96285000	0	0	0	33226	1085	31425	205472;205473;205474	277708	277708			1	
LPVEPHIGK	1	Unmodified	988.57057	0.57056597	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2.25	0.433		3	1							1	1	1	1	30.853	30.246	3	0.0010091	26472	160511_QHF_FH_JSI10i_2	48.091	35.054			1.2291	1.157	28.602	4	0	Median	1.2258	1.0674	NaN	1	0	Median	0.85691	1.0752	NaN	1	0	Median	1.2324	1.245	NaN	1	0	Median	1.8805	1.9603	NaN	1	0	Median	172850000	85165000	87688000	31727000	10467000	21260000	41297000	24888000	16409000	61586000	33555000	28031000	38243000	16254000	21989000	33227	4681	31426	205475;205476;205477;205478	277709	277709			1	
LPVGGFADLMGSNGPQK	1	Unmodified	1686.8399	0.83994089	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	78.183	78.055	2;3	0.018891	69679	160511_QHF_FH_JSI11i_3	33.893	27.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33228	4133	31427	205479;205480	277710;277711	277710			2	
LPVGGFAELIGSNGPQK	1	Unmodified	1682.8992	0.89917033	121	O00308	WWP2	NEDD4-like E3 ubiquitin-protein ligase WWP2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		83.362	83.362	3	0.0007591	74358	160511_QHF_FH_JSI11i_3	52.372	44.195			0.866	0.81846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.866	0.81846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22755000	12651000	10104000	0	0	0	0	0	0	22755000	12651000	10104000	0	0	0	33229	121	31428	205481	277712	277712			1	
LPVGPSHK	1	Unmodified	833.47594	0.4759373	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.1886	9.2861	3	0.048151	6615	160511_QHF_FH_JSI12i_3	26.442	17.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119700000	0	119700000	0	0	0	0	0	0	0	0	0	119700000	0	119700000	33230	653	31429	205482	277713	277713			1	
LPVGPSHKLSNNYYCTR	1	Acetyl (K)	2046.9945	0.99454405	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.341	46.613	3	0.028738	25228	160513_QHF_FH_JSI11Kac_6	41.554	31.273			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3791000	3791000	0	0	0	0	0	0	0	3791000	3791000	0	0	0	0	33231	653	31430	205483	277714	277714			1	
LPVHTEISWK	1	Unmodified	1208.6554	0.65535823	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	46.53	45.927	3	0.00013644	39252	160511_QHF_FH_JSI12i_3	71.03	53.291			0.85276	0.86598	26.225	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1247	1.3322	NaN	1	0	Median	0.8821	0.82882	NaN	1	0	Median	0.85276	0.86598	NaN	1	0	Median	196500000	121270000	75234000	0	0	0	15364000	9644500	5719800	79602000	52885000	26716000	101540000	58738000	42798000	33232	3736	31431	205484;205485;205486	277715;277716	277716			2	
LPVIDPESGNTLYILTHK	1	Unmodified	2009.0833	0.083342284	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	91.263	90.678	3	0.0086616	80513	160511_QHF_FH_JSI10i_2	42.118	31.257			0.53921	0.59189	42.6	3	3	Median	NaN	NaN	NaN	0	0	Median	0.4407	0.53066	59.582	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53921	0.59189	NaN	1	1	Median	48092000	32326000	15766000	0	0	0	35829000	23986000	11842000	0	0	0	12264000	8340200	3923400	33233	1825	31432	205487;205488;205489	277717;277718;277719	277719			3	
LPVIIDLR	0	Unmodified	937.59605	0.59605244	4588	Q9C0G6	DNAH6	Dynein heavy chain 6, axonemal	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				21.58	20.31	3	0.015326	16285	160511_QHF_FH_JSI9i_3	42.109	2.5666			6.6899	5.3525	NaN	1	1	Median	6.6899	5.3525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58506000	10960000	47546000	58506000	10960000	47546000	0	0	0	0	0	0	0	0	0	33234	4588	31433	205490	277720	277720			1	
LPVLAGCLK	1	Unmodified	969.56812	0.56812313	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	56.118	55.363	2	0.001901	47816	160511_QHF_FH_JSI11i_2	67.032	36.847			1.0966	1.2462	39.094	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90425	1.0873	NaN	1	0	Median	0.93628	0.9608	NaN	1	0	Median	1.688	1.8204	34.309	2	1	Median	658240000	277770000	380470000	0	0	0	147160000	75573000	71591000	225090000	110780000	114320000	285990000	91424000	194560000	33235	2094	31434	205491;205492;205493;205494	277721;277722;277723;277724;277725	277723			5	
LPVPAAAPTPWETHK	1	Unmodified	1613.8566	0.85657723	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.115	59.981	3	2.2308E-05	53306	160511_QHF_FH_JSI11i_3	83.692	71.899			1.0469	1.0104	9.2754	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0185	0.94624	NaN	1	0	Median	1.0761	1.0789	NaN	1	1	Median	240050000	130980000	109070000	0	0	0	0	0	0	116070000	64605000	51469000	123980000	66371000	57606000	33236	2304	31435	205495;205496	277726;277727;277728	277727			3	
LPVSSKPGK	2	Unmodified	911.54402	0.54401687	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	9.1872	8.8093	3	0.026825	6609	160511_QHF_FH_JSI10i_3	34.206	20.049			1.0362	1.0287	9.5791	3	1	Median	1.282	1.0287	NaN	1	0	Median	0.75695	0.88566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.0586	NaN	1	1	Median	660440000	335780000	324660000	220290000	83875000	136420000	187160000	99684000	87478000	0	0	0	252980000	152220000	100770000	33237	1430	31436	205497;205498;205499	277729;277730;277731	277729			3	
LPVVLPQSTLNLAKPDFGAEAK	2	Unmodified	2307.2838	0.28383301	643	O95084	PRSS23	Serine protease 23	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	91.241	91.208	3	1.0248E-05	78973	160511_QHF_FH_JSI12i_3	64.522	54.371			0.94533	0.97414	15.141	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94272	0.87524	NaN	1	0	Median	0.94795	1.0842	NaN	1	0	Median	151680000	74417000	77262000	0	0	0	0	0	0	78445000	38240000	40205000	73234000	36177000	37057000	33238	643	31437	205500;205501	277732	277732			1	
LPVVVPLHSLDEK	1	Unmodified	1444.829	0.8289655	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	68.889	67.994	3	0.002079	58621	160511_QHF_FH_JSI12i_2	50.108	37.128			0.96404	1.0176	5.693	4	2	Median	1.2041	1.0151	NaN	1	0	Median	0.91105	1.1266	NaN	1	1	Median	1.0201	1.02	NaN	1	0	Median	0.89043	0.99023	NaN	1	1	Median	386100000	180550000	205560000	75754000	25537000	50217000	101280000	52795000	48486000	120590000	59237000	61349000	88483000	42978000	45506000	33239	598	31438	205502;205503;205504;205505;205506	277733;277734;277735;277736;277737;277738;277739;277740;277741	277735			9	
LPWSNPLK	1	Unmodified	953.53345	0.53345218	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0	By matching			By MS/MS	3	0			2							1			1	56.884	55.988	2	0.036415	47910	160511_QHF_FH_JSI12i_3	40.268	22.502			0.7756	0.69651	10.684	2	0	Median	0.78346	0.64583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76781	0.75116	NaN	1	0	Median	170260000	97885000	72375000	41721000	20762000	20959000	0	0	0	0	0	0	128540000	77123000	51416000	33240	4460	31439	205507;205508	277742	277742			1	
LPYDVTPEQALAHEEVK	1	Unmodified	1937.9735	0.97345748	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	1	3	63.332	62.402	3	5.3627E-06	53548	160511_QHF_FH_JSI12i_2	97.081	86.707			0.69904	0.74947	36.624	8	6	Median	0.65543	0.56784	36.389	3	3	Plateau	0.86477	1.0433	55.064	2	1	Median	NaN	NaN	NaN	0	0	Median	0.70975	0.79471	30.507	3	2	Median	2263700000	1269100000	994610000	716110000	414870000	301250000	632480000	355160000	277320000	0	0	0	915140000	499090000	416050000	33241	1600	31440	205509;205510;205511;205512;205513;205514;205515;205516;205517	277743;277744;277745;277746;277747;277748;277749;277750	277745			8	
LPYIHFFHTVLK	1	Unmodified	1513.8446	0.84455598	3422	Q8IWF6	DENND6A	Protein DENND6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	78.845	70.429	3;4	1.9974E-13	38527	160513_QHF_FH_JSI11Kac_6	130.01	110.43			1.0109	0.85763	20.654	5	1	Median	0.94688	0.80485	8.9827	2	0	Median	1.0219	1.1992	NaN	1	0	Median	1.0854	1.0737	NaN	1	0	Median	0.72129	0.76743	NaN	1	1	Median	403100000	214790000	188310000	200230000	108290000	91938000	118500000	63901000	54599000	38279000	16630000	21649000	46087000	25963000	20124000	33242	3422	31441	205518;205519;205520;205521;205522;205523	277751;277752;277753;277754;277755;277756;277757;277758;277759	277752			9	
LPYQYLHYALFK	1	Unmodified	1554.8235	0.82348619	3885	Q92791	LEPREL4	Synaptonemal complex protein SC65	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	4	3	2	3	80.442	75.518	2;3	7.2622E-06	37988	160513_QHF_FH_JSI12Kac_6	93.258	81.465			0.83384	0.73678	37.26	12	5	Median	0.86245	0.71064	46.494	4	2	Median	0.59388	0.68542	17.213	3	2	Median	1.0154	0.95678	12.823	2	0	Median	0.97175	1.0302	49.199	3	1	Median	2865400000	1638600000	1226900000	638170000	337170000	301010000	1197400000	735350000	462070000	576550000	355290000	221260000	453300000	210760000	242540000	33243	3885	31442	205524;205525;205526;205527;205528;205529;205530;205531;205532;205533;205534;205535	277760;277761;277762;277763;277764;277765;277766;277767;277768;277769;277770;277771;277772;277773;277774;277775;277776;277777;277778;277779;277780;277781	277778			22	
LPYVTMGSGSLAAMAVFEDK	1	Unmodified	2086.0115	0.011499249	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.67	0.471		1	2								1	1	1	101.4	101.39	3	1.3794E-14	90449	160511_QHF_FH_JSI11i_3	149.52	135.25			1.2799	1.3084	30.539	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.58196	0.72378	NaN	1	1	Median	1.1644	1.1081	NaN	1	0	Median	1.2799	1.3084	NaN	1	0	Median	932390000	475580000	456810000	0	0	0	217060000	148840000	68213000	291240000	123140000	168090000	424100000	203590000	220500000	33244	4267	31443	205536;205537;205538	277782;277783	277782			2	
LQAAGNAVK	1	Unmodified	870.49232	0.49231565	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By matching	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	11.611	11.208	2	0.049128	8788	160511_QHF_FH_JSI11i_1	55.676	14.73			0.77709	0.9034	12.904	4	0	Linear	1.1671	0.95709	NaN	1	0	Median	0.71658	0.85273	NaN	1	0	Median	0.8217	0.79392	NaN	1	0	Median	1.0244	1.0644	NaN	1	0	Median	260370000	138030000	122330000	47446000	22742000	24704000	75096000	46465000	28631000	73693000	36830000	36863000	64131000	31997000	32134000	33245	5616;5628	31444	205539;205540;205541;205542	277784	277784			0	
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	Unmodified	3125.432	0.43198317	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.643	5	5	1							2	3	4	2	64.731	64.046	2;3;4	1.7986E-105	56259	160511_QHF_FH_JSI9i_2	242.23	229.14			1.0812	1.0501	15.618	11	1	Median	1.055	0.86483	4.1102	2	0	Median	0.79737	0.88726	14.471	3	1	Median	1.1295	1.1214	4.3843	4	0	Median	1.0298	1.153	10.519	2	0	Median	4776600000	2113600000	2663000000	1540700000	653690000	886980000	395080000	226960000	168120000	2547900000	1086600000	1461300000	292930000	146370000	146560000	33246	2161	31445	205543;205544;205545;205546;205547;205548;205549;205550;205551;205552;205553	277785;277786;277787;277788;277789;277790;277791;277792;277793;277794;277795;277796;277797;277798;277799;277800;277801;277802	277798			18	
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	0	Oxidation (M)	3141.4269	0.4268978	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	57.664	56.767	3	3.0768E-45	51721	160511_QHF_FH_JSI12i_1	162.92	156.76			1.4092	1.4837	13.412	3	1	Median	1.4355	1.1847	NaN	1	0	Median	1.23	1.5044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4092	1.4837	NaN	1	0	Median	421910000	176010000	245900000	155560000	61986000	93573000	38790000	19098000	19691000	0	0	0	227560000	94922000	132640000	33247	2161	31445	205554;205555;205556	277803;277804;277805	277803		1810	3	
LQAANAEDIK	1	Unmodified	1071.556	0.55603811	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	26.599	23.368	2	2.5358E-07	20486	160511_QHF_FH_JSI10i_1	114.4	76.315			0.82922	0.83773	18.092	6	0	Median	0.84525	0.68814	NaN	1	0	Median	0.65391	0.76522	25.083	2	0	Median	0.94925	0.9119	18.351	2	0	Median	0.81818	0.87623	NaN	1	0	Median	1237000000	700930000	536050000	283430000	145560000	137870000	212560000	138830000	73728000	330590000	152970000	177620000	410390000	263560000	146830000	33248	2195	31446	205557;205558;205559;205560;205561;205562	277806;277807;277808;277809;277810;277811;277812;277813	277809			8	
LQAAVDGPMDK	1	Unmodified	1143.5594	0.55940893	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	4.19	6	5				2				4	5	1	3	35.429	33.154	2	7.9747E-06	29789	160511_QHF_FH_JSI11i_1	109.42	92.033			1.0162	1.0903	40.446	11	5	Median	1.3527	1.1796	57.377	4	3	Median	0.87901	1.0277	33.055	3	1	Median	1.3221	1.2778	NaN	1	0	Median	1.3508	1.4406	17.066	3	1	Plateau	4189800000	1928300000	2261500000	1306700000	546160000	760510000	961260000	534500000	426760000	902690000	412260000	490430000	1019200000	435400000	583800000	33249	1741	31447	205563;205564;205565;205566;205567;205568;205569;205570;205571;205572;205573;205574;205575	277814;277815;277816;277817;277818;277819;277820;277821;277822;277823;277824;277825;277826;277827;277828;277829;277830;277831;277832;277833	277816			20	
LQAAVDGPMDK	1	Oxidation (M)	1159.5543	0.55432356	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	3									1			2	29.895	29.115	2	0.0005472	28994	160511_QHF_FH_JSI9i_1	73.499	46.245			2.0287	1.6842	53.012	3	2	Median	2.0287	1.6842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9511	2.0042	73.612	2	2	Median	224740000	80273000	144470000	119200000	41351000	77850000	0	0	0	0	0	0	105540000	38922000	66621000	33250	1741	31447	205576;205577;205578	277834;277835;277836;277837	277836		1427	4	
LQAAVDGPMDKK	2	Unmodified	1271.6544	0.65437195	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	25.655	25.623	3	0.03737	21369	160511_QHF_FH_JSI12i_3	23.831	7.8886			1.8729	1.8953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8729	1.8953	NaN	1	0	Median	36521000	13551000	22970000	0	0	0	0	0	0	0	0	0	36521000	13551000	22970000	33251	1741	31448	205579	277838	277838			1	
LQAAVDGPMDKKEE	2	Unmodified	1529.7396	0.73955814	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	2				By MS/MS	2	0		1											1	29.869	28.561	3	0.02276	24080	160511_QHF_FH_JSI12i_2	48.112	27.73			1.4557	1.6634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4557	1.6634	NaN	1	1	Median	48169000	21233000	26937000	0	0	0	0	0	0	0	0	0	48169000	21233000	26937000	33252	1741	31449	205580	277839	277839			1	
LQADDFLQDYTLLINILHSEDLGK	1	Unmodified	2773.4174	0.41742595	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	99.552	90.974	3	8.9416E-247	51818	160513_QHF_FH_JSI11Kac_6	319.63	299.13			0.78101	0.86725	29.385	5	2	Median	1.0531	0.89138	3.8807	2	2	Median	0.77792	0.91449	NaN	1	0	Median	0.47023	0.45962	NaN	1	0	Median	0.78101	0.82813	NaN	1	0	Median	2274800000	1242700000	1032200000	902820000	463830000	438990000	885810000	483030000	402780000	90574000	57762000	32811000	395630000	238030000	157600000	33253	5254	31450	205581;205582;205583;205584;205585	277840;277841;277842;277843;277844;277845;277846;277847	277840			8	
LQAEAPHIVVGTPGR	0	Unmodified	1543.8471	0.84707518	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		6	6						2	3	4	5	2	49.209	47.236	2;3	1.2254E-05	40392	160511_QHF_FH_JSI12i_3	118.31	110.58			0.96863	1.0472	22.465	14	2	Median	1.4074	1.1985	19.745	3	1	Median	1.0132	1.2032	10.416	4	0	Median	0.88921	0.86481	19.087	5	1	Median	0.75423	0.7695	0.67979	2	0	Median	2456400000	1287600000	1168800000	349450000	153420000	196030000	619920000	302730000	317190000	836040000	452020000	384020000	650980000	379410000	271580000	33254	2519	31451	205586;205587;205588;205589;205590;205591;205592;205593;205594;205595;205596;205597;205598;205599	277848;277849;277850;277851;277852;277853;277854;277855;277856;277857;277858;277859;277860;277861;277862;277863;277864;277865;277866;277867;277868;277869;277870;277871	277870			24	
LQAEAQQLR	0	Unmodified	1055.5724	0.57235688	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	20.625	19.834	2	0.024266	16253	160511_QHF_FH_JSI11i_2	36.506	15.218			1.0911	0.7551	24.597	3	0	Plateau	1.1963	1.0261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72577	0.74285	NaN	1	0	Median	1.0911	1.2039	NaN	1	0	Median	350420000	176050000	174370000	109000000	47095000	61910000	0	0	0	162090000	91961000	70127000	79329000	36993000	42336000	33255	2738	31452	205600;205601;205602	277872;277873;277874	277874			3	
LQAEAQQLRK	1	Unmodified	1183.6673	0.6673199	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	5.97		6	7					4	2	4	5	6	4	17.717	14.572	2;3	1.4583E-05	12131	160511_QHF_FH_JSI11i_3	72.275	56.021			1.0271	1.0071	35.121	19	3	Median	1.1006	0.94139	12.468	4	0	Median	0.81934	0.97351	12.857	5	0	Median	1.0706	1.0437	31.828	6	1	Median	1.1241	1.1802	71.281	4	2	Median	2879800000	1384900000	1494900000	580640000	265970000	314670000	1197700000	574730000	622920000	940930000	456790000	484140000	160630000	87406000	73220000	33256	2738	31453	205603;205604;205605;205606;205607;205608;205609;205610;205611;205612;205613;205614;205615;205616;205617;205618;205619;205620;205621	277875;277876;277877;277878;277879;277880;277881;277882;277883;277884;277885;277886;277887;277888;277889;277890;277891;277892;277893;277894;277895;277896;277897;277898;277899;277900;277901;277902;277903;277904;277905	277875			31	
LQAEEAER	0	Unmodified	944.45632	0.45632407	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	9.6844	9.3178	2	0.010155	7027	160511_QHF_FH_JSI10i_1	55.37	20.014			1.2934	1.1925	28.013	4	0	Median	1.2081	0.9843	NaN	1	0	Median	0.78996	0.93381	NaN	1	0	Median	1.6803	1.645	NaN	1	0	Median	1.3847	1.4447	NaN	1	0	Median	429520000	213210000	216310000	81394000	37886000	43508000	144340000	76797000	67546000	100260000	51557000	48701000	103520000	46969000	56551000	33257	2636	31454	205622;205623;205624;205625	277906;277907;277908	277906			3	
LQAEEQQK	1	Unmodified	972.48762	0.4876242	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.8788	6.5431	2	0.002392	4505	160511_QHF_FH_JSI12i_1	89.142	44.45			0.66567	0.76692	27.114	4	1	Linear	1.7102	1.4087	NaN	1	1	Median	0.67737	0.79385	NaN	1	0	Median	1.1684	1.1297	NaN	1	0	Median	0.78939	0.82838	NaN	1	0	Median	338630000	179250000	159380000	89587000	41053000	48534000	96953000	60179000	36774000	73765000	35067000	38698000	78325000	42952000	35372000	33258	3679	31455	205626;205627;205628;205629	277909;277910;277911;277912	277910			4	
LQAEEVAQQK	1	Unmodified	1142.5932	0.5931519	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			20.41	19.7	2	0.0024135	16613	160511_QHF_FH_JSI9i_1	60.019	4.9074			1.1633	1.1338	32.165	2	1	Median	1.1069	0.90319	NaN	1	0	Median	1.2225	1.4234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236620000	94857000	141760000	131400000	52873000	78527000	105220000	41983000	63238000	0	0	0	0	0	0	33259	2636	31456	205630;205631	277913;277914;277915	277914			3	
LQAEIDNIK	1	Unmodified	1042.5659	0.56587452	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.93	5	1				3	1			1	4	3	2	42.678	38.476	2	0.00087552	34254	160511_QHF_FH_JSI10i_1	83.948	31.232		+	0.90658	0.94994	27.403	10	4	Median	0.88602	0.71458	NaN	1	0	Median	0.60347	0.71223	31.296	4	3	Median	1.1444	1.1196	6.888	3	1	Median	0.9105	0.97303	21.51	2	0	Median	5562300000	2936000000	2626200000	910900000	410700000	500200000	2181500000	1248300000	933160000	1371900000	706980000	664870000	1098000000	569980000	528000000	33260	53;71	31457	205632;205633;205634;205635;205636;205637;205638;205639;205640;205641	277916;277917;277918;277919;277920;277921;277922;277923;277924;277925;277926;277927	277921			12	
LQAEIEGLK	1	Unmodified	999.56006	0.56006086	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.76	6.02	4	4	5			1	3	4		5	5	5	6	48.566	43.89	2	3.5449E-06	37714	160511_QHF_FH_JSI12i_2	122.52	58.951		+	1.0285	1.0565	11.869	20	1	Median	1.1633	0.9534	9.4478	4	1	Median	0.90625	1.0619	5.6111	5	0	Median	1.035	1.026	16.052	5	0	Median	1.0039	1.0729	11.032	6	0	Median	18720000000	8775600000	9944200000	3442100000	1650700000	1791400000	5264900000	2832600000	2432200000	5564900000	2241800000	3323100000	4447900000	2050500000	2397500000	33261	51	31458	205642;205643;205644;205645;205646;205647;205648;205649;205650;205651;205652;205653;205654;205655;205656;205657;205658;205659;205660;205661;205662	277928;277929;277930;277931;277932;277933;277934;277935;277936;277937;277938;277939;277940;277941;277942;277943;277944;277945;277946;277947;277948;277949;277950;277951;277952;277953;277954;277955;277956;277957;277958;277959;277960;277961;277962;277963;277964;277965;277966;277967;277968;277969;277970;277971;277972;277973	277936			46	
LQAEIEGLKGQR	1	Acetyl (K)	1382.7518	0.75177781	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS			14	0							1				1			61.367	50.667	2	0.0033932	27775	160513_QHF_FH_JSI10Kac_4	73.067	27.93		+	6.2585	7.1244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.2585	7.1244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2477400	122520	2354800	0	0	0	2477400	122520	2354800	0	0	0	0	0	0	33262	51	31459	205663	277974	277974	25		1	
LQAEISQAAR	0	Unmodified	1085.5829	0.58292157	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	25.106	23.969	2	0.014409	19944	160511_QHF_FH_JSI12i_2	43.083	12.916			1.5571	1.4753	24.326	2	1	Median	2.1054	1.7521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1516	1.2421	NaN	1	0	Median	58760000	26124000	32636000	26447000	9872800	16575000	0	0	0	0	0	0	32312000	16251000	16061000	33263	327	31460	205664;205665	277975;277976	277975			2	
LQAELEEMAK	1	Unmodified	1160.5747	0.57472465	1708	P50542	PEX5	Peroxisomal targeting signal 1 receptor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			44.847	44.424	2	0.018049	39950	160511_QHF_FH_JSI10i_1	44.318	30.94			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33264	1708	31461	205666	277977	277977			1	
LQAENAAEWGR	0	Unmodified	1243.5945	0.59454889	3957	Q96A19	CCDC102A	Coiled-coil domain-containing protein 102A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.492	26.225	2	0.00030613	22687	160511_QHF_FH_JSI9i_1	76.17	37.207			1.3687	1.1177	NaN	1	0	Median	1.3687	1.1177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34434000	11660000	22773000	34434000	11660000	22773000	0	0	0	0	0	0	0	0	0	33265	3957	31462	205667	277978	277978			1	
LQAENDASK	1	Unmodified	974.46689	0.46688876	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.32	3	1			1	1				1	1	2	2	7.3503	4.7437	2	0.0023153	4532	160511_QHF_FH_JSI11i_1	65.224	30.972			0.92682	1.0006	24.817	5	0	Median	1.2556	1.0399	NaN	1	0	Median	1.391	1.609	NaN	1	0	Median	0.85745	0.83544	NaN	1	0	Median	0.90831	0.9753	3.6153	2	0	Median	916380000	462640000	453740000	364350000	171220000	193130000	2160700	1051200	1109400	284490000	160830000	123660000	265380000	129550000	135830000	33266	1400	31463	205668;205669;205670;205671;205672;205673	277979;277980;277981;277982	277979			4	
LQAENDASKEEVK	2	Unmodified	1459.7155	0.71545188	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	14.08	13.65	3	0.031414	11444	160511_QHF_FH_JSI12i_1	36.445	23.613			0.85434	0.88426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85434	0.88426	NaN	1	1	Median	52659000	28108000	24551000	0	0	0	0	0	0	0	0	0	52659000	28108000	24551000	33267	1400	31464	205674	277983	277983			1	
LQAENLQLR	0	Unmodified	1083.6037	0.60365701	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.365	39.995	2	0.055007	34116	160511_QHF_FH_JSI12i_2	43.246	2.2173			0.7766	0.83577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7766	0.83577	NaN	1	1	Median	43515000	26150000	17365000	0	0	0	0	0	0	0	0	0	43515000	26150000	17365000	33268	5545	31465	205675	277984	277984			1	
LQAENTALQK	1	Unmodified	1114.5982	0.59823728	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.577	21.074	2	0.0038973	18453	160511_QHF_FH_JSI12i_1	67.897	32.602			0.18927	0.19419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18927	0.19419	NaN	1	1	Median	54517000	46233000	8283300	0	0	0	0	0	0	0	0	0	54517000	46233000	8283300	33269	2841	31466	205676	277985	277985			1	
LQAETEELEEEK	1	Unmodified	1446.6726	0.67258402	1077	P15408	FOSL2	Fos-related antigen 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		34.15	33.408	2	0.0040853	29928	160511_QHF_FH_JSI11i_1	63.944	47.312			0.47051	0.41523	43.983	2	2	Median	0.36696	0.30424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60327	0.5667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	107620000	64029000	43594000	56868000	35794000	21074000	0	0	0	50755000	28235000	22520000	0	0	0	33270	1077	31467	205677;205678	277986;277987	277986			2	
LQAFFHIQAQK	1	Unmodified	1329.7194	0.71935547	4957	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.097	54.89	3	0.00050724	29017	160513_QHF_FH_JSI9Kac_6	53.567	42.308			1.0416	1.0482	14.963	4	0	Median	1.2701	1.0844	NaN	1	0	Median	0.84916	1.0132	NaN	1	0	Median	0.93208	0.89253	NaN	1	0	Median	1.164	1.2782	NaN	1	0	Median	81094000	41346000	39748000	21615000	9434300	12181000	32998000	18561000	14437000	17108000	8987700	8120300	9372800	4362900	5009900	33271	4957	31468	205679;205680;205681;205682	277988;277989;277990;277991	277989			3	
LQAFGLNPK	1	Unmodified	986.55492	0.5549159	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	49.874	48.9	2	0.00085844	41811	160511_QHF_FH_JSI12i_3	72.789	46.187			0.92924	0.99011	8.3503	7	1	Median	1.1975	1.0262	17.043	2	0	Median	0.84267	1.0006	1.4831	2	0	Median	1.1199	1.0512	NaN	1	0	Median	0.89683	0.93557	0.0052	2	1	Median	197160000	97895000	99270000	42638000	16398000	26240000	37534000	19790000	17744000	37847000	22111000	15735000	79146000	39595000	39550000	33272	3580	31469	205683;205684;205685;205686;205687;205688;205689	277992;277993;277994;277995;277996;277997	277997			6	
LQAFSAAIESCNK	1	Unmodified	1437.6922	0.69221402	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.07	1	7	5					7		3	6	7	4	53.58	49.957	2;3	1.6039E-15	44106	160511_QHF_FH_JSI11i_3	163.78	127.45			1.012	1.1744	36.203	17	6	Median	1.2291	1.0402	46.036	2	2	Median	0.98155	1.1787	14.858	4	1	Median	0.94242	0.94747	43.764	7	2	Median	1.5052	1.4505	5.3981	4	1	Linear	1314100000	663960000	650120000	105820000	55441000	50381000	185150000	101880000	83267000	529460000	304460000	225000000	493640000	202170000	291470000	33273	2193	31470	205690;205691;205692;205693;205694;205695;205696;205697;205698;205699;205700;205701;205702;205703;205704;205705;205706;205707;205708;205709	277998;277999;278000;278001;278002;278003;278004;278005;278006;278007;278008;278009;278010;278011;278012;278013;278014;278015;278016;278017;278018	277998			21	
LQAGEYVSLGK	1	Unmodified	1163.6186	0.61863837	707;418	O95573;O60488	ACSL3;ACSL4	Long-chain-fatty-acid--CoA ligase 3;Long-chain-fatty-acid--CoA ligase 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	49.461	48.629	2	0.00025504	42574	160511_QHF_FH_JSI9i_2	78.556	57.931			1.0889	1.0549	12.328	8	0	Median	1.1717	0.97251	8.0381	2	0	Median	0.74728	0.88104	2.334	2	0	Median	1.1364	1.1245	2.5984	2	0	Median	1.0537	1.1434	7.9382	2	0	Median	1206100000	600750000	605310000	217980000	119820000	98159000	323170000	174910000	148270000	379140000	162490000	216650000	285770000	143530000	142240000	33274	707;418	31471	205710;205711;205712;205713;205714;205715;205716;205717	278019;278020;278021;278022;278023;278024;278025;278026;278027;278028;278029;278030	278028			11	
LQAILEDIQVTLFTR	0	Unmodified	1758.988	0.98798534	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		102.02	101.94	2	6.2694E-06	89690	160511_QHF_FH_JSI11i_2	151.74	119.13			0.8632	0.84163	6.9197	3	0	Median	0.89724	0.76459	NaN	1	0	Median	0.68882	0.84163	NaN	1	0	Median	0.8632	0.87451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	407190000	212690000	194490000	147570000	74967000	72608000	93712000	51645000	42067000	165900000	86080000	79820000	0	0	0	33275	878	31472	205718;205719;205720	278031;278032;278033	278032			3	
LQAISWAR	0	Unmodified	943.52395	0.52395013	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	48.283	47.429	2	0.042344	38994	160511_QHF_FH_JSI9i_3	38.962	14.99			1.0836	1.0022	8.9538	4	1	Median	1.2025	0.98667	NaN	1	0	Median	0.73913	0.85537	NaN	1	0	Median	1.1229	1.0179	NaN	1	0	Median	1.0456	1.0459	NaN	1	1	Median	269560000	125340000	144220000	88795000	37409000	51386000	75509000	37876000	37633000	52056000	28658000	23397000	53204000	21400000	31804000	33276	4951	31473	205721;205722;205723;205724	278034;278035	278034			2	
LQALANEQAAAAHELEK	1	Unmodified	1805.9272	0.92717599	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	3.11		11	4					1		2	3	5	6	51.014	49.315	2;3	1.144E-23	42494	160511_QHF_FH_JSI11i_2	134.21	109.35			1.0033	1.0487	58.43	12	8	Median	1.0852	0.93484	103.61	2	2	Median	0.69935	0.84971	36.253	2	1	Median	1.0584	1.0487	57.116	4	2	Median	1.3306	1.4351	65.651	4	3	Median	2742900000	1278400000	1464500000	379920000	173020000	206900000	458990000	262230000	196760000	810290000	390200000	420090000	1093700000	452930000	640770000	33277	3328	31474	205725;205726;205727;205728;205729;205730;205731;205732;205733;205734;205735;205736;205737;205738;205739;205740	278036;278037;278038;278039;278040;278041;278042;278043;278044;278045;278046;278047;278048;278049;278050;278051;278052;278053;278054;278055	278046			20	
LQALDTGWNELHK	1	Unmodified	1523.7732	0.77324153	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	59.55	58.782	3	0.055628	50355	160511_QHF_FH_JSI12i_3	25.731	21.017			1.0025	1.0115	26.479	4	0	Median	0.94031	0.82438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0688	1.0732	NaN	1	0	Median	1.1126	1.2088	33.559	2	0	Median	226800000	112760000	114040000	32282000	17858000	14424000	0	0	0	104820000	50816000	54006000	89691000	44085000	45606000	33278	2162	31475	205741;205742;205743;205744	278056	278056			0	
LQALKDTANR	1	Acetyl (K)	1170.6357	0.63568542	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	37.293	27.758	2	0.00085692	16170	160513_QHF_FH_JSI10Kac_4	88.496	50.937			0.46802	0.50653	58.276	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93966	1.095	NaN	1	0	Median	0.35404	0.34934	NaN	1	0	Median	0.46802	0.50653	NaN	1	0	Median	50930000	33242000	17688000	0	0	0	10946000	5681500	5264600	32480000	21962000	10518000	7503400	5598400	1904900	33279	1322	31476	205745;205746;205747	278057;278058;278059	278057	1251		3	
LQALTGNEGR	0	Unmodified	1057.5516	0.55162144	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	20.759	20.123	2	1.0482E-05	16514	160511_QHF_FH_JSI11i_2	104.48	68.604			0.90407	1.0105	13.051	5	0	Median	1.2853	1.0902	NaN	1	0	Median	0.78185	0.97148	NaN	1	0	Median	1.0571	1.0482	NaN	1	0	Median	0.81814	0.88847	18.206	2	0	Median	641200000	351130000	290070000	139710000	66777000	72932000	109960000	64688000	45273000	207070000	114580000	92488000	184450000	105080000	79377000	33280	3042	31477	205748;205749;205750;205751;205752	278060;278061;278062;278063;278064;278065;278066	278064			7	
LQALTLLMIHYR	0	Unmodified	1470.8381	0.8380904	3640	Q8NEN9	PDZD8	PDZ domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.718	78.093	3	0.0003304	43486	160513_QHF_FH_JSI10Kac_6	72.496	45.087			0.96758	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96758	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82333000	37516000	44818000	0	0	0	82333000	37516000	44818000	0	0	0	0	0	0	33281	3640	31478	205753	278067	278067			1	
LQAMHLER	0	Unmodified	996.51748	0.51748454	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							3	4	4	4	23.278	22.556	2;3	0.0012278	18937	160511_QHF_FH_JSI11i_3	59.153	29.078			0.77835	0.77689	40.34	13	5	Median	1.4404	1.1991	14.802	2	0	Median	0.66183	0.74263	26.516	4	1	Median	0.84756	0.83994	37.357	4	1	Median	0.55394	0.59891	69.565	3	3	Median	3074700000	1556200000	1518500000	327520000	126830000	200690000	987110000	534150000	452970000	1453000000	708930000	744040000	307120000	186300000	120820000	33282	2282	31479	205754;205755;205756;205757;205758;205759;205760;205761;205762;205763;205764;205765;205766;205767;205768	278068;278069;278070;278071;278072;278073;278074;278075;278076;278077;278078;278079;278080;278081;278082;278083	278068			16	
LQANFFEMDIPK	1	Unmodified	1451.7119	0.71188683	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				88.608	88.161	2	0.01598	77624	160511_QHF_FH_JSI9i_2	61.932	33.919			1.5826	1.3907	NaN	1	0	Median	1.5826	1.3907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17047000	6967700	10080000	17047000	6967700	10080000	0	0	0	0	0	0	0	0	0	33283	5381	31480	205769	278084	278084			0	
LQANGPVAK	1	Unmodified	896.50797	0.50796571	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0.577	1	4	1							2	1	2	1	14.635	14.047	2	0.0037918	11597	160511_QHF_FH_JSI9i_2	58.782	18.679			1.045	1.0422	14.075	6	1	Median	1.2399	1.049	19.247	2	1	Median	1.058	1.2939	NaN	1	0	Median	0.98682	0.96275	5.4514	2	0	Median	0.98785	1.0855	NaN	1	0	Median	660910000	331430000	329480000	82859000	37593000	45265000	62242000	33718000	28524000	435990000	214600000	221390000	79822000	45521000	34301000	33284	2586	31481	205770;205771;205772;205773;205774;205775	278085;278086;278087;278088	278087			4	
LQANGPVAKK	2	Acetyl (K)	1066.6135	0.61349341	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		29.752	21.318	2	0.015065	13339	160513_QHF_FH_JSI11Kac_4	78.516	34.069			1.0171	1.0101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0171	1.0101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22581000	10716000	11865000	0	0	0	0	0	0	22581000	10716000	11865000	0	0	0	33285	2586	31482	205776	278089	278089	2565		1	
LQANWNRAEEENEFQIPGR	0	Unmodified	2300.0934	0.093406473	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.504	61.997	3	0.02277	50869	160511_QHF_FH_JSI9i_3	32.926	19.499			1.2123	0.98357	NaN	1	0	Median	1.2123	0.98357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23992000	9423400	14568000	23992000	9423400	14568000	0	0	0	0	0	0	0	0	0	33286	3494	31483	205777	278090	278090			1	
LQAPDSATLLEK	1	Unmodified	1284.6925	0.6925316	4444	Q9BUL5	PHF23	PHD finger protein 23	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.523	55.371	2	0.015881	49139	160511_QHF_FH_JSI9i_1	51.092	36.885			0.49644	0.40743	NaN	1	1	Median	0.49644	0.40743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47337000	35319000	12017000	47337000	35319000	12017000	0	0	0	0	0	0	0	0	0	33287	4444	31484	205778	278091	278091			1	
LQAPLSEPTLSQHTHDYPYSLVSR	0	Unmodified	2738.3664	0.36639344	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			71.782	70.662	4	8.7189E-11	59265	160511_QHF_FH_JSI10i_3	87.509	83.776			1.1905	1.4104	2.9723	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1905	1.4104	2.9723	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124700000	59960000	64736000	0	0	0	124700000	59960000	64736000	0	0	0	0	0	0	33288	3074	31485	205779;205780	278092;278093	278092			1	
LQAQLNELQAQLSQK	1	Unmodified	1710.9264	0.92644771	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	2	2	2	67.335	66.724	2	2.3695E-06	60665	160511_QHF_FH_JSI11i_1	123.95	103.17			0.77053	0.79315	32.885	7	5	Median	0.84621	0.74078	NaN	1	1	Median	0.97367	1.114	35.126	2	2	Median	0.95625	0.9273	50.33	2	2	Median	0.67508	0.705	16.661	2	0	Median	143000000	73414000	69586000	13402000	3666100	9735500	52949000	28315000	24634000	36164000	16803000	19361000	40486000	24630000	15856000	33289	2587	31486	205781;205782;205783;205784;205785;205786;205787;205788	278094;278095;278096;278097;278098;278099;278100;278101;278102	278094			9	
LQAQPNALDSGSPAQQSR	0	Unmodified	1866.9184	0.91840222	5822				yes	yes	0	0	0	0			By MS/MS		1	0	1											1		64.471	64.028	2	0.053356	58057	160511_QHF_FH_JSI11i_1	38.634	15.717	+		1.7983	1.691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7983	1.691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63461000	24158000	39303000	0	0	0	0	0	0	63461000	24158000	39303000	0	0	0	33290	5822	31487	205789	278103	278103			1	
LQAQQDAVNIVCHSK	1	Unmodified	1709.8519	0.85190256	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.5		5	1					1		1	2	3	1	43.422	41.202	2;3	2.5685E-07	36151	160511_QHF_FH_JSI11i_3	133.25	114.42			1.2384	1.3626	50.643	7	2	Median	1.7122	1.4865	NaN	1	0	Median	1.261	1.5686	31.358	2	1	Median	0.90957	0.91318	61.63	3	1	Median	1.2384	1.3626	NaN	1	0	Median	831770000	400000000	431780000	105930000	43867000	62068000	184920000	99627000	85290000	345660000	174390000	171270000	195260000	82107000	113150000	33291	1842	31488	205790;205791;205792;205793;205794;205795;205796	278104;278105;278106;278107;278108;278109;278110	278104			7	
LQAQSLSTVGPR	0	Unmodified	1255.6884	0.68844927	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	38.134	37.471	2	0.0060429	31953	160511_QHF_FH_JSI12i_3	52.725	26.62			0.98962	0.9654	13.039	6	1	Median	1.1069	0.98092	NaN	1	0	Median	0.68383	0.84382	NaN	1	0	Median	1.003	0.98256	4.748	2	1	Median	0.85782	0.92815	25.504	2	0	Median	223200000	121270000	101930000	36640000	17866000	18774000	31071000	18431000	12639000	78236000	39003000	39234000	77252000	45967000	31285000	33292	318	31489	205797;205798;205799;205800;205801;205802	278111;278112;278113;278114	278114			4	
LQASISAFR	0	Unmodified	991.54508	0.5450795	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	56.537	46.945	2	0.014434	25441	160513_QHF_FH_JSI11Kac_6	52.716	7.6347			1.1043	1.0786	5.5109	5	0	Median	1.2812	1.0886	1.3026	2	0	Median	0.93433	1.1214	NaN	1	0	Median	1.1043	1.0509	NaN	1	0	Median	0.91531	0.97286	NaN	1	0	Median	266750000	120960000	145790000	69213000	26454000	42759000	93641000	45285000	48356000	49506000	23551000	25956000	54388000	25666000	28722000	33293	2787	31490	205803;205804;205805;205806;205807	278115;278116;278117;278118	278116			4	
LQASNVTNK	1	Unmodified	973.51926	0.51925868	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.322	11.925	2	0.0030732	9799	160511_QHF_FH_JSI12i_1	60.91	20.642			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33294	5375	31491	205808	278119	278119			1	
LQATEVR	0	Unmodified	815.45012	0.45011648	5324	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.717	12.926	2	0.049359	10068	160511_QHF_FH_JSI12i_2	43	1.6979			1.0297	1.154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0297	1.154	NaN	1	0	Median	442420000	181230000	261200000	0	0	0	0	0	0	0	0	0	442420000	181230000	261200000	33295	5324	31492	205809	278120	278120			1	
LQATLDMQSGIIHAAEEK	1	Unmodified	1953.983	0.98297631	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.14	0.35		6	1									2	5	69.22	68.264	2;3	1.8024E-09	58827	160511_QHF_FH_JSI12i_3	132.14	107.85			1.0945	1.2318	40.021	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84724	0.86015	NaN	1	1	Median	1.2152	1.2957	43.42	4	4	Median	330630000	147290000	183340000	0	0	0	0	0	0	20132000	14468000	5664100	310490000	132820000	177680000	33296	109	31493	205810;205811;205812;205813;205814;205815;205816	278121;278122;278123;278124;278125;278126;278127	278127			7	
LQATMETDDNIR	0	Unmodified	1405.6507	0.65074314	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	34.719	34.326	2	0.00027824	30672	160511_QHF_FH_JSI10i_1	75.566	47.824			1.0567	1.1014	3.7595	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89354	1.0703	NaN	1	0	Median	1.1864	1.1531	NaN	1	0	Median	1.0567	1.1014	NaN	1	0	Median	135900000	72166000	63732000	0	0	0	54425000	30134000	24291000	42926000	21845000	21081000	38548000	20187000	18361000	33297	1718	31494	205817;205818;205819	278128;278129;278130;278131	278131			4	
LQAVEVVITHLAPGTK	1	Unmodified	1674.9669	0.96685596	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.43		6	10						9	7	6	6	6	81.701	78.849	2;3	7.3093E-43	39428	160513_QHF_FH_JSI9Kac_6	177.88	134.37			0.79185	0.85643	39.992	22	8	Median	0.97796	0.84895	39.206	6	1	Median	0.66403	0.77203	14.061	6	2	Median	1.0153	0.9607	59.265	6	4	Median	0.82683	0.84496	40.371	4	1	Median	12435000000	6858600000	5576500000	2413100000	1301400000	1111700000	3205700000	1688500000	1517200000	2820400000	1418000000	1402400000	3995800000	2450700000	1545100000	33298	5540	31495	205820;205821;205822;205823;205824;205825;205826;205827;205828;205829;205830;205831;205832;205833;205834;205835;205836;205837;205838;205839;205840;205841;205842;205843;205844	278132;278133;278134;278135;278136;278137;278138;278139;278140;278141;278142;278143;278144;278145;278146;278147;278148;278149;278150;278151;278152;278153;278154;278155;278156;278157;278158;278159;278160;278161;278162;278163;278164;278165;278166;278167;278168;278169;278170;278171;278172;278173	278158			42	
LQAVTDDHIR	0	Unmodified	1166.6044	0.60438529	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	2.86	3	8	8					1		5	5	5	5	23.377	22.271	2;3	3.8355E-10	18522	160511_QHF_FH_JSI12i_2	115.78	93.788			1.1266	1.0855	22.164	19	2	Median	1.6252	1.3495	17.156	5	1	Median	0.89979	1.1024	33.256	4	1	Median	1.112	1.081	9.5426	5	0	Median	1.1666	1.2334	21.543	5	0	Median	5578800000	2538600000	3040200000	1105200000	454710000	650490000	1072900000	499770000	573160000	1988900000	867320000	1121600000	1411800000	716830000	694960000	33299	1334	31496	205845;205846;205847;205848;205849;205850;205851;205852;205853;205854;205855;205856;205857;205858;205859;205860;205861;205862;205863;205864	278174;278175;278176;278177;278178;278179;278180;278181;278182;278183;278184;278185;278186;278187;278188;278189;278190;278191;278192;278193;278194;278195	278177			21	
LQAYHTQTTPLIEYYR	0	Unmodified	1996.0054	0.005426314	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							4	4	3	3	59.097	58.387	2;3	2.822E-16	50153	160511_QHF_FH_JSI12i_3	166.92	157.67			0.9617	0.96081	11.579	11	3	Median	1.3863	1.1923	6.0431	2	1	Median	0.8312	1.008	12.604	4	2	Median	0.96298	0.91379	7.1093	3	0	Plateau	0.95019	0.95906	0.25819	2	0	Median	3608000000	1869200000	1738800000	385030000	168780000	216250000	616830000	359730000	257100000	1404400000	712590000	691830000	1201700000	628100000	573590000	33300	1835	31497	205865;205866;205867;205868;205869;205870;205871;205872;205873;205874;205875;205876;205877;205878	278196;278197;278198;278199;278200;278201;278202;278203;278204;278205;278206;278207;278208;278209;278210;278211;278212;278213;278214;278215;278216;278217;278218	278217			23	
LQAYHTQTTPLIEYYRK	1	Unmodified	2124.1004	0.10038933	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.35		1	9						6	5	6	4	1	55.807	51.608	3;4	1.6614E-09	42551	160511_QHF_FH_JSI9i_3	140.81	124.5			0.90492	0.92502	21.685	16	7	Median	1.0771	0.85487	30.66	5	2	Median	0.83271	0.98005	13.056	6	2	Median	0.94065	0.91926	18.096	4	3	Median	0.97126	1.0317	NaN	1	0	Median	1673000000	888370000	784590000	975710000	487900000	487810000	560550000	324450000	236100000	115800000	64566000	51238000	20889000	11453000	9435700	33301	1835	31498	205879;205880;205881;205882;205883;205884;205885;205886;205887;205888;205889;205890;205891;205892;205893;205894	278219;278220;278221;278222;278223;278224;278225;278226;278227;278228;278229;278230;278231;278232;278233;278234;278235;278236;278237;278238;278239;278240;278241;278242	278229			23	
LQDAEIAR	0	Unmodified	914.48214	0.48214489	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.08	4	4	2			3	4	2		4	6	5	4	20.968	16.549	2	0.0001641	11035	160513_QHF_FH_JSI12Kac_4	130.27	48.975			1.001	1.016	8.299	19	2	Median	1.2192	1.0498	4.5883	4	1	Median	0.85563	0.99587	8.8699	6	1	Median	1.001	0.98972	3.5334	5	0	Median	1.0222	1.1116	11.534	4	0	Median	26827000000	13793000000	13034000000	5592700000	2847800000	2744900000	7560800000	4017300000	3543500000	7562700000	3789700000	3773000000	6110500000	3138100000	2972400000	33302	852	31499	205895;205896;205897;205898;205899;205900;205901;205902;205903;205904;205905;205906;205907;205908;205909;205910;205911;205912;205913	278243;278244;278245;278246;278247;278248;278249;278250;278251;278252;278253;278254;278255;278256;278257;278258;278259;278260;278261;278262;278263;278264;278265;278266;278267;278268;278269;278270;278271;278272;278273;278274;278275;278276;278277	278274			35	
LQDAEIARLMEDLDRNK	1	Unmodified	2029.0262	0.026238111	852	P06703	S100A6	Protein S100-A6	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		84.377	84.377	4	0.055727	75227	160511_QHF_FH_JSI11i_3	28.58	14.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22931000	22931000	0	0	0	0	0	0	0	22931000	22931000	0	0	0	0	33303	852	31500	205914	278278	278278			1	
LQDAFSSIGQSCHLDLPQIAVVGGQSAGK	1	Unmodified	2982.4869	0.48691928	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0				By MS/MS	2.67	0.471		1	2										3	94.238	94.011	3;4	5.7789E-14	81410	160511_QHF_FH_JSI12i_3	80.439	71.352			1.099	1.0866	20.516	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.099	1.0866	20.516	3	2	Median	79957000	29979000	49978000	0	0	0	0	0	0	0	0	0	79957000	29979000	49978000	33304	1711	31501	205915;205916;205917	278279;278280;278281;278282;278283	278282			5	
LQDAINILK	1	Unmodified	1026.6073	0.6073454	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			2	2	2	4	60.316	58.592	2	6.0004E-06	50267	160511_QHF_FH_JSI12i_2	113.71	70.583			1.0708	1.1406	20.503	10	2	Median	1.265	1.0702	22.348	2	0	Median	1.1452	1.4027	25.157	2	1	Median	1.2149	1.215	22.744	2	1	Median	0.97387	1.0152	17.834	4	0	Median	2451600000	1077100000	1374500000	399630000	152290000	247350000	565310000	268860000	296450000	862070000	358900000	503170000	624610000	297060000	327550000	33305	1544	31502	205918;205919;205920;205921;205922;205923;205924;205925;205926;205927	278284;278285;278286;278287;278288;278289;278290;278291;278292;278293;278294;278295;278296	278286			13	
LQDASAEVER	0	Unmodified	1116.5411	0.54111633	2298	Q10589	BST2	Bone marrow stromal antigen 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	2	2	1	19.218	14.252	2	1.0953E-07	14046	160511_QHF_FH_JSI9i_1	121.83	62.849			1.0981	1.1205	10.489	7	1	Median	1.4859	1.1862	8.0544	2	1	Median	0.95273	1.1393	13.921	2	0	Median	1.1363	1.1118	6.4375	2	0	Median	0.88522	0.94494	NaN	1	0	Median	2839000000	1405400000	1433700000	830910000	360900000	470010000	684540000	375150000	309400000	655180000	336460000	318720000	668390000	332870000	335520000	33306	2298	31503	205928;205929;205930;205931;205932;205933;205934	278297;278298;278299;278300;278301;278302;278303;278304;278305;278306	278305			10	
LQDAYYIFQEMADK	1	Unmodified	1733.7971	0.79707302	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.542	4	10	1							3	4	6	2	94.376	94.079	2;3	2.5923E-21	83344	160511_QHF_FH_JSI10i_2	173.11	151.88			0.79502	0.87346	44.267	14	8	Median	1.0277	0.85609	65.357	3	2	Median	0.7919	0.97814	31.237	4	2	Median	0.86445	0.86734	58.383	5	4	Median	0.75762	0.85769	3.5712	2	0	Median	965290000	500510000	464790000	136690000	64831000	71864000	218300000	112420000	105890000	457220000	238860000	218360000	153070000	84399000	68673000	33307	178	31504	205935;205936;205937;205938;205939;205940;205941;205942;205943;205944;205945;205946;205947;205948;205949	278307;278308;278309;278310;278311;278312;278313;278314;278315;278316;278317;278318;278319;278320;278321;278322;278323;278324;278325;278326;278327;278328;278329;278330;278331	278331			25	
LQDDSVETVTSIEQAK	1	Unmodified	1761.8632	0.86323833	1653	P49356	FNTB	Protein farnesyltransferase subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		55.743	54.955	2;3	0.0001209	48815	160511_QHF_FH_JSI9i_1	92.295	61.964			0.44983	0.39614	69.667	2	1	Median	0.79613	0.64832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25417	0.24205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60739000	44529000	16210000	13799000	5450700	8348700	0	0	0	46940000	39078000	7861400	0	0	0	33308	1653	31505	205950;205951	278332;278333	278333			2	
LQDEANYHLYGSR	0	Unmodified	1564.727	0.72701962	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							1	1	2	2	33.63	32.994	3	0.00044509	28888	160511_QHF_FH_JSI10i_2	59.68	53.836			0.88666	1.2577	23.091	6	2	Linear	1.4154	1.2018	NaN	1	1	Median	0.82323	1.0165	NaN	1	0	Median	1.2834	1.2645	45.621	2	1	Median	1.2891	1.3545	4.0529	2	0	Median	350610000	168680000	181930000	52129000	20714000	31414000	77731000	42234000	35497000	115150000	58987000	56163000	105600000	46745000	58860000	33309	2437	31506	205952;205953;205954;205955;205956;205957	278334;278335;278336;278337;278338;278339;278340;278341	278339			8	
LQDEFENR	0	Unmodified	1049.4778	0.47778779	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	22.481	21.819	2	0.0021249	18933	160511_QHF_FH_JSI10i_1	82.452	61.898			1.1765	1.0978	12.716	6	0	Median	1.4538	1.2161	19.464	2	0	Median	0.86167	1.039	3.8993	2	0	Median	1.3372	1.2958	NaN	1	0	Median	1.0605	1.1283	NaN	1	0	Median	965770000	487940000	477830000	261010000	114070000	146940000	234740000	123830000	110910000	217500000	117100000	100400000	252510000	132940000	119570000	33310	2084	31507	205958;205959;205960;205961;205962;205963	278342;278343;278344;278345;278346;278347;278348	278344			7	
LQDEGQEAEGEK	1	Unmodified	1331.5841	0.58410336	942	P09914;Q5T764	IFIT1;IFIT1B	Interferon-induced protein with tetratricopeptide repeats 1;Interferon-induced protein with tetratricopeptide repeats 1B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.543	10.159	2	1.0584E-10	7954	160511_QHF_FH_JSI12i_1	144.57	113.5			0.95845	0.94672	13.945	4	0	Median	1.0141	0.83353	NaN	1	0	Median	0.90586	1.0499	NaN	1	0	Median	1.1337	1.0936	NaN	1	0	Median	0.83823	0.85369	NaN	1	0	Median	521240000	274590000	246650000	139310000	74926000	64380000	101290000	57143000	44146000	147870000	69243000	78625000	132780000	73273000	59504000	33311	942	31508	205964;205965;205966;205967	278349;278350;278351;278352;278353;278354;278355;278356;278357	278352			9	
LQDEIQNMK	1	Unmodified	1117.5438	0.54375887	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	30.329	29.607	2	0.0016682	26484	160511_QHF_FH_JSI12i_1	76.827	43.03			0.56316	0.62991	145.14	3	2	Plateau	2.8136	2.3039	NaN	1	1	Median	0.15435	0.18166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0547	2.1842	NaN	1	1	Median	2168200000	887020000	1281200000	700770000	180690000	520090000	397790000	357380000	40406000	0	0	0	1069700000	348950000	720720000	33312	913	31509	205968;205969;205970	278358;278359;278360	278358			3	
LQDFKSFLLK	2	Acetyl (K)	1279.7176	0.71762413	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	87.208	78.497	2	5.7866E-07	43391	160513_QHF_FH_JSI11Kac_6	122.69	90.371			1.1315	0.97495	24	5	0	Median	1.1918	1.0109	5.1229	2	0	Median	0.73668	0.87269	NaN	1	0	Median	0.69113	0.64896	NaN	1	0	Median	1.1619	1.2351	NaN	1	0	Median	785300000	406850000	378450000	111450000	52895000	58559000	136390000	77766000	58626000	364460000	193490000	170970000	172990000	82694000	90295000	33313	1415	31510	205971;205972;205973;205974;205975	278361;278362;278363;278364;278365;278366	278361	1374;1375		5	
LQDFYDSTAGK	1	Unmodified	1243.5721	0.57208211	3270	Q7Z4H3	HDDC2	HD domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.738	37.522	2	0.0012796	33221	160511_QHF_FH_JSI9i_1	64.792	28.121			1.2404	1.0096	NaN	1	0	Median	1.2404	1.0096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55695000	20454000	35241000	55695000	20454000	35241000	0	0	0	0	0	0	0	0	0	33314	3270	31511	205976	278367	278367			1	
LQDGSIK	1	Unmodified	759.41267	0.41266834	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								1	2	1		10.804	10.384	2	0.013827	7914	160511_QHF_FH_JSI9i_1	68.915	14.39			1.2023	1.2123	6.7367	4	4	Median	1.3908	1.1518	NaN	1	1	Median	1.0317	1.2422	9.2205	2	2	Median	1.2874	1.2629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1516700000	800560000	716150000	512640000	262890000	249750000	544590000	294150000	250440000	459480000	243510000	215960000	0	0	0	33315	1202	31512	205977;205978;205979;205980	278368;278369;278370;278371	278370			4	
LQDIVSALEDR	0	Unmodified	1257.6565	0.65648044	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	70.29	69.243	2	0.0011864	59668	160511_QHF_FH_JSI12i_2	90.05	54.755			0.66103	0.78298	1.9181	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6429	0.79367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67967	0.77243	NaN	1	1	Median	117880000	70514000	47365000	0	0	0	66648000	39979000	26669000	0	0	0	51230000	30535000	20695000	33316	2549	31513	205981;205982	278372;278373	278372			2	
LQDLAGGIFPEDEIPEK	1	Unmodified	1869.936	0.93600934	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	84.232	83.834	2	7.1908E-23	76502	160511_QHF_FH_JSI11i_1	182.17	160.12			0.99422	1.0391	19.135	5	2	Median	1.0457	0.85346	NaN	1	0	Median	1.0288	1.2144	22.042	2	2	Median	0.97997	0.93782	NaN	1	0	Median	0.99422	1.0524	NaN	1	0	Median	220050000	114780000	105270000	52513000	25534000	26979000	77302000	40104000	37198000	47486000	24748000	22738000	42746000	24389000	18356000	33317	1871	31514	205983;205984;205985;205986;205987;205988	278374;278375;278376;278377;278378;278379;278380;278381;278382	278375			9	
LQDLATQLQEK	1	Unmodified	1285.6878	0.68778057	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	47.56	46.619	2	0.002794	42354	160511_QHF_FH_JSI12i_1	71.03	39.16			0.38484	0.35507	1.3621	2	2	Median	0.4305	0.35166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34402	0.3585	NaN	1	1	Median	85248000	63031000	22217000	21874000	14691000	7182900	0	0	0	0	0	0	63374000	48340000	15034000	33318	482	31515	205989;205990	278383;278384	278383			2	
LQDLDTDYGSGYPNDPK	1	Unmodified	1896.8378	0.83775186	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.145	48.643	2	7.7942E-11	43231	160511_QHF_FH_JSI9i_1	104.87	88.613			1.0104	0.98474	12.249	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0104	1.2017	NaN	1	0	Median	1.0284	0.96137	NaN	1	0	Median	0.94969	0.98474	NaN	1	0	Median	188810000	106290000	82517000	0	0	0	67915000	41722000	26192000	67336000	38429000	28908000	53560000	26143000	27417000	33319	565	31516	205991;205992;205993;205994	278385;278386;278387;278388;278389;278390;278391;278392;278393;278394	278394			10	
LQDLELK	1	Unmodified	857.48583	0.48583328	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.088	37.668	2	0.016218	34148	160511_QHF_FH_JSI12i_1	63.419	0			0.79919	0.94015	16.785	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.7396	0.90141	NaN	1	0	Median	1.3199	1.2596	NaN	1	1	Median	1.0397	1.091	NaN	1	0	Median	855600000	462060000	393540000	0	0	0	284530000	165240000	119290000	326630000	157780000	168840000	244440000	139040000	105400000	33320	2147	31517	205995;205996;205997	278395;278396;278397;278398;278399	278396			5	
LQDLQGEK	1	Unmodified	929.48181	0.48181054	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.902	19.694	2	0.025833	11888	160511_QHF_FH_JSI10i_1	42.599	8.5954			1.2277	1.345	14.35	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9953	1.2152	NaN	1	0	Median	1.5145	1.4886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	395980000	165030000	230950000	0	0	0	277420000	132460000	144950000	118570000	32571000	85996000	0	0	0	33321	432	31518	205998;205999	278400;278401	278401			2	
LQDLTLRDLEK	1	Unmodified	1342.7456	0.7456298	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	56.584	56.052	2;3	9.9391E-05	49448	160511_QHF_FH_JSI11i_3	79.492	45.106			1.1635	1.1431	9.0295	8	0	Median	1.293	1.138	NaN	1	0	Median	0.97484	1.1887	NaN	1	0	Median	1.2192	1.2645	6.4646	3	0	Plateau	1.014	1.0336	9.7263	3	0	Median	1855200000	890620000	964600000	128620000	55328000	73293000	201470000	119930000	81541000	664450000	321320000	343130000	860670000	394050000	466630000	33322	5633	31519	206000;206001;206002;206003;206004;206005;206006;206007	278402;278403;278404;278405;278406;278407;278408;278409;278410;278411;278412	278402			10	
LQDLYMALQAFSFK	1	Unmodified	1673.8487	0.84871466	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	80.755	80.417	2	0.025478	73202	160511_QHF_FH_JSI12i_1	41.399	9.9777			0.81008	0.91108	11.103	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71189	0.84229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92183	0.98549	NaN	1	0	Median	851400000	418810000	432600000	0	0	0	494270000	258710000	235560000	0	0	0	357140000	160100000	197040000	33323	3267	31520	206008;206009	278413;278414;278415	278413			3	
LQDMLDGFIK	1	Unmodified	1178.6005	0.60054547	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	81.467	80.877	2	0.00039769	69787	160511_QHF_FH_JSI12i_2	86.898	32.741			0.98209	0.98655	31.548	7	2	Median	1.253	1.0879	NaN	1	0	Median	0.53281	0.63837	39.827	2	1	Median	0.89584	0.88555	15.273	2	1	Median	1.0389	1.1562	13.19	2	0	Median	766820000	399400000	367430000	97839000	35745000	62095000	193610000	128170000	65440000	300800000	150350000	150450000	174570000	85128000	89441000	33324	1839	31521	206010;206011;206012;206013;206014;206015;206016	278416;278417;278418;278419;278420;278421;278422;278423;278424	278418			9	
LQDNVREDLYEAADK	1	Unmodified	1777.8483	0.84825697	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	48.439	47.791	2;3	0.0037756	40880	160511_QHF_FH_JSI12i_3	48.623	37.361			1.1304	1.1663	13.863	6	2	Median	1.5118	1.3022	NaN	1	1	Median	1.1514	1.4053	NaN	1	0	Median	1.1225	1.0388	NaN	1	0	Median	0.97787	1.1617	10.93	3	1	Plateau	700290000	324100000	376190000	182020000	74409000	107610000	124200000	49343000	74857000	135250000	69842000	65407000	258830000	130510000	128320000	33325	4773	31522	206017;206018;206019;206020;206021;206022	278425;278426;278427;278428;278429;278430	278429			6	
LQDPFSLYR	0	Unmodified	1137.5819	0.58185894	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.234	69.343	2	1.3205E-06	60678	160511_QHF_FH_JSI11i_2	133.12	64.201			0.98256	1.0321	5.8385	4	2	Median	1.2036	1.0229	NaN	1	1	Median	0.75079	0.93185	NaN	1	1	Median	1.0416	1.0639	NaN	1	0	Median	0.92683	1.0414	NaN	1	0	Median	1313900000	654390000	659550000	211840000	93754000	118080000	287420000	155110000	132310000	469710000	218750000	250960000	344970000	186780000	158190000	33326	1196	31523	206023;206024;206025;206026	278431;278432;278433;278434;278435;278436	278435			6	
LQDQAAETIEALHAAGLK	1	Unmodified	1877.9847	0.98469087	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.78	71.9	3	0.00053988	63780	160511_QHF_FH_JSI10i_2	52.866	37.711			1.3391	1.408	24.306	4	0	Median	2.2079	1.9027	NaN	1	0	Median	0.86521	1.0547	NaN	1	0	Median	1.3451	1.3531	NaN	1	0	Median	1.3331	1.4651	NaN	1	0	Median	189300000	92535000	96765000	28611000	11717000	16894000	37854000	17599000	20255000	59673000	26358000	33316000	63162000	36861000	26301000	33327	3585	31524	206027;206028;206029;206030	278437;278438;278439;278440;278441;278442	278441			6	
LQDQIFNLMK	1	Unmodified	1248.6536	0.65364367	352	O43665	RGS10	Regulator of G-protein signaling 10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	77.56	76.692	2	0.0011375	67297	160511_QHF_FH_JSI11i_2	78.334	43.039			0.55903	0.53696	24.848	3	3	Median	0.55903	0.47313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51398	0.53696	NaN	1	1	Median	0.70718	0.76419	NaN	1	1	Median	146720000	100820000	45905000	29224000	18597000	10627000	0	0	0	77706000	53912000	23793000	39795000	28310000	11485000	33328	352	31525	206031;206032;206033	278443;278444;278445	278445			3	
LQDREWLTELFQQSK	1	Unmodified	1919.9741	0.97412619	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		88.34	87.583	3	3.7384E-05	72231	160511_QHF_FH_JSI9i_3	113.72	81.896			0.86184	0.77415	29.681	6	1	Median	0.96112	0.77415	13.521	2	0	Median	0.62941	0.72398	44.161	2	1	Median	0.87364	0.8163	46.12	2	0	Median	NaN	NaN	NaN	0	0	Median	247550000	128710000	118830000	68313000	34612000	33702000	48950000	33920000	15030000	130280000	60182000	70101000	0	0	0	33329	2084	31526	206034;206035;206036;206037;206038;206039	278446;278447;278448;278449;278450;278451;278452;278453	278453			8	
LQDSVPENK	1	Unmodified	1028.5138	0.51383895	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	2					2						2	2	18.652	14.844	2	0.00066253	12493	160511_QHF_FH_JSI11i_1	76.478	47.965			1.0983	1.0693	39.565	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0983	1.0693	39.565	2	1	Median	NaN	NaN	NaN	0	0	Median	88783000	53331000	35452000	0	0	0	0	0	0	88783000	53331000	35452000	0	0	0	33330	1576	31527	206040;206041;206042;206043	278454;278455;278456;278457;278458	278454			5	
LQDTYNLDTDTISK	1	Unmodified	1625.7784	0.77844607	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.255	51.583	2	1.3976E-09	46384	160511_QHF_FH_JSI10i_1	142.38	124.32			1.0078	1.0054	12.095	4	0	Median	1.021	0.8324	NaN	1	0	Median	0.89113	1.039	NaN	1	0	Median	0.99477	0.97291	NaN	1	0	Median	1.0438	1.102	NaN	1	0	Median	1208600000	589880000	618770000	273740000	122190000	151550000	341910000	178340000	163570000	344830000	166890000	177950000	248160000	122460000	125700000	33331	1035	31528	206044;206045;206046;206047	278459;278460;278461;278462;278463;278464;278465;278466;278467	278463			9	
LQDVFNTVGADIIQLPQIVVVGTQSSGK	1	Unmodified	2925.5811	0.58113724	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	102.47	102.37	3	7.0147E-32	88293	160511_QHF_FH_JSI12i_2	141.43	135.14			0.95403	0.97315	10.07	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.65918	0.80115	NaN	1	0	Median	0.95403	0.97315	NaN	1	0	Median	0.82093	0.92386	NaN	1	0	Median	280910000	153030000	127880000	0	0	0	55081000	34193000	20887000	156850000	83107000	73747000	68978000	35728000	33250000	33332	133	31529	206048;206049;206050	278468;278469	278468			2	
LQDVGNEQFLEEEGK	1	Unmodified	1733.8108	0.81080883	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			53.367	52.963	2	0.001244	47792	160511_QHF_FH_JSI10i_1	77.192	36.477			0.91906	1.0458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91906	1.0458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21156000	12633000	8523300	0	0	0	21156000	12633000	8523300	0	0	0	0	0	0	33333	3470	31530	206051	278470	278470			1	
LQDYEEK	1	Unmodified	923.42363	0.42362696	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	13.825	10.479	2	0.0028298	9403	160511_QHF_FH_JSI12i_1	108.46	77.171			0.86745	0.92191	23.969	7	2	Median	1.1282	0.90137	NaN	1	0	Median	0.6405	0.75189	41.909	2	1	Median	0.8145	0.80015	21.444	2	1	Median	0.93756	1.0161	13.751	2	0	Median	5453600000	2730400000	2723300000	1225000000	483490000	741520000	1466100000	862500000	603630000	1310700000	692610000	618080000	1451800000	691780000	760020000	33334	1073	31531	206052;206053;206054;206055;206056;206057;206058	278471;278472;278473;278474;278475;278476;278477;278478;278479;278480;278481	278474			11	
LQEAGILSAEELQR	0	Unmodified	1555.8206	0.82058566	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		62.123	61.343	2	0.0011036	53545	160511_QHF_FH_JSI11i_2	80.69	55.304			1.3151	1.2029	19.119	3	3	Median	1.3151	1.1335	NaN	1	1	Median	0.99997	1.2029	NaN	1	1	Median	1.6133	1.6195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	172550000	68882000	103660000	43299000	15491000	27807000	56633000	27459000	29175000	72615000	25933000	46682000	0	0	0	33335	2636	31532	206059;206060;206061;206062	278482;278483;278484;278485	278484			4	
LQEALGMHESK	1	Unmodified	1241.6074	0.60742176	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				22.641	21.659	2	0.0016871	18511	160511_QHF_FH_JSI9i_2	66.435	26.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33336	3221	31533	206063	278486	278486			1	
LQEALMHYK	1	Unmodified	1131.5747	0.57466507	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.236	31.311	3	0.0025116	26426	160511_QHF_FH_JSI11i_2	42.718	36.756			0.7893	0.86376	18.841	4	1	Median	0.76636	0.67742	NaN	1	1	Median	0.81292	0.97846	NaN	1	0	Median	0.7618	0.76251	NaN	1	0	Median	0.86542	0.99177	NaN	1	0	Median	206550000	101720000	104820000	32904000	14608000	18296000	52613000	29290000	23323000	73717000	32894000	40823000	47313000	24932000	22381000	33337	274	31534	206064;206065;206066;206067	278487;278488;278489;278490	278489			4	
LQEALMHYKEAIR	1	Acetyl (K)	1642.8501	0.85011165	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.136	59.574	3	0.0022078	32285	160513_QHF_FH_JSI11Kac_6	54.402	41.776			0.71822	0.70094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71822	0.70094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12154000	7896100	4258100	0	0	0	0	0	0	12154000	7896100	4258100	0	0	0	33338	274	31535	206068	278491	278491	146		1	
LQEALNLFK	1	Unmodified	1074.6073	0.6073454	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0				By MS/MS	2	0		1											1	67.847	66.548	2	0.017754	57303	160511_QHF_FH_JSI12i_2	52.255	34.22			1.8084	2.0208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8084	2.0208	NaN	1	1	Median	167150000	82707000	84443000	0	0	0	0	0	0	0	0	0	167150000	82707000	84443000	33339	2048	31536	206069	278492	278492			1	
LQEAPSSSPDSWNNPVMMTLTK	1	Unmodified	2432.1352	0.13519621	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.569	87.083	2	0.019355	79303	160511_QHF_FH_JSI12i_1	38.511	27.071			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33340	2535	31537	206070	278493	278493			1	
LQEAQMQQGPEAHKEPPAPSQGPGGK	2	Unmodified	2696.2977	0.29766194	2855	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		27.341	27.341	4	0.012411	23483	160511_QHF_FH_JSI11i_3	26.556	23.59			0.94465	0.89501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94465	0.89501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37297000	20325000	16971000	0	0	0	0	0	0	37297000	20325000	16971000	0	0	0	33341	2855	31538	206071	278494	278494			1	
LQEDTDK	1	Unmodified	847.39233	0.39232683	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.842	5.5181	2	0.013927	3515	160511_QHF_FH_JSI12i_1	67.032	25.53			0.94965	0.9342	8.9188	4	0	Median	1.0811	0.89547	NaN	1	0	Median	0.80401	0.9746	NaN	1	0	Median	0.89628	0.86867	NaN	1	0	Median	1.0062	1.0588	NaN	1	0	Median	1017200000	473690000	543540000	160000000	70119000	89882000	272990000	130410000	142570000	285550000	130130000	155420000	298700000	143030000	155670000	33342	1016	31539	206072;206073;206074;206075	278495;278496;278497;278498	278496			4	
LQEEERER	0	Unmodified	1087.5258	0.52580062	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.37		8	5					4		3	3	6	5	5.5368	2.9876	2;3	2.7297E-15	2931	160511_QHF_FH_JSI11i_2	182.98	55.523			0.93231	1.0335	13.559	16	1	Median	1.4292	1.2253	5.3526	3	0	Median	0.87396	1.0655	5.3417	3	0	Plateau	1.0575	1.0658	7.7315	5	1	Median	0.80924	0.9053	8.5231	5	0	Median	10973000000	6001500000	4971100000	1500300000	755000000	745310000	2315000000	1447800000	867210000	4551800000	2348600000	2203300000	2605400000	1450100000	1155300000	33343	914	31540	206076;206077;206078;206079;206080;206081;206082;206083;206084;206085;206086;206087;206088;206089;206090;206091;206092	278499;278500;278501;278502;278503;278504;278505;278506;278507;278508;278509;278510;278511;278512;278513;278514	278506			16	
LQEEERERR	0	Unmodified	1243.6269	0.62691165	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				5.101	4.7072	3	0.019663	2615	160511_QHF_FH_JSI9i_2	43.635	15.308			1.1696	0.99087	NaN	1	0	Median	1.1696	0.99087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116920000	48548000	68367000	116920000	48548000	68367000	0	0	0	0	0	0	0	0	0	33344	914	31541	206093	278515	278515			1	
LQEEHSLQDVIFK	1	Unmodified	1584.8148	0.814772	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	62.147	61.105	2;3	8.1504E-05	52533	160511_QHF_FH_JSI12i_2	96.059	73.861			1.137	1.2604	15.074	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97533	0.98322	NaN	1	1	Median	1.1424	1.2755	1.6824	2	2	Median	82998000	37872000	45127000	0	0	0	0	0	0	23954000	13034000	10920000	59045000	24838000	34207000	33345	4222	31542	206094;206095;206096	278516;278517;278518	278516			3	
LQEEITK	1	Unmodified	859.4651	0.46509784	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	17.405	17.124	2	0.037612	14449	160511_QHF_FH_JSI11i_1	48.561	6.9089			1.0424	1.116	6.4419	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0133	1.1672	NaN	1	0	Median	1.0599	1.0279	NaN	1	0	Median	1.0424	1.116	NaN	1	0	Median	970610000	455420000	515190000	0	0	0	326930000	164990000	161950000	272700000	106080000	166620000	370970000	184360000	186620000	33346	1824	31543	206097;206098;206099	278519;278520;278521;278522	278520			4	
LQEELSAATDR	0	Unmodified	1231.6044	0.60444487	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.704	28.341	2	0.0026828	25062	160511_QHF_FH_JSI10i_1	56.729	30.127			0.60369	0.84144	33.632	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76299	0.90426	NaN	1	0	Median	0.85974	0.84144	NaN	1	0	Median	0.47766	0.48879	NaN	1	0	Median	177430000	97102000	80329000	0	0	0	62773000	32217000	30556000	45290000	25399000	19891000	69367000	39486000	29881000	33347	4255	31544	206100;206101;206102	278523;278524;278525;278526	278525			4	
LQEELSENDK	1	Unmodified	1203.5619	0.56191135	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.421	19.912	2	0.0001354	17011	160511_QHF_FH_JSI11i_1	83.883	47.488			1.0618	1.0543	13.929	4	0	Median	1.1737	0.973	NaN	1	0	Median	1.0382	1.2001	NaN	1	0	Median	0.90405	0.88935	NaN	1	0	Median	1.0859	1.1424	NaN	1	0	Median	468830000	206430000	262410000	114480000	47230000	67249000	98765000	42199000	56566000	116230000	50664000	65564000	139360000	66335000	73027000	33348	679	31545	206103;206104;206105;206106	278527;278528;278529	278527			3	
LQEELSENDKK	2	Unmodified	1331.6569	0.65687437	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	14.747	14.317	2	0.001099	12072	160511_QHF_FH_JSI12i_1	84.17	38.802			0.65498	0.65261	27.735	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65498	0.65261	27.735	2	2	Median	30421000	17006000	13415000	0	0	0	0	0	0	0	0	0	30421000	17006000	13415000	33349	679	31546	206107;206108	278530;278531	278531			2	
LQEELSQAESTIDELK	1	Unmodified	1831.9051	0.90510315	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	75.172	74.637	2;3	8.3215E-22	67530	160511_QHF_FH_JSI10i_1	213.67	166.48			1.0337	1.0174	28.266	7	2	Median	1.1589	0.94727	56.742	2	1	Median	1.0134	1.2066	NaN	1	0	Median	1.0423	1.0144	0.41235	2	1	Median	0.87015	0.88912	30.085	2	0	Median	479640000	235420000	244220000	118820000	51305000	67515000	76698000	42051000	34646000	130750000	57384000	73366000	153380000	84680000	68696000	33350	2516	31547	206109;206110;206111;206112;206113;206114;206115;206116;206117	278532;278533;278534;278535;278536;278537;278538;278539;278540;278541;278542;278543	278538			12	
LQEEMLQREEAENTLQSFR	0	Unmodified	2350.1223	0.12232334	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		64.281	63.86	3	0.00075721	56578	160511_QHF_FH_JSI10i_2	51.397	31.844			0.85001	0.92937	44.8	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0235	1.2758	NaN	1	1	Median	0.70595	0.67703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	759960000	399450000	360510000	0	0	0	320890000	131590000	189300000	439070000	267860000	171210000	0	0	0	33351	913	31548	206118;206119	278544;278545	278545			2	
LQEEQENAPEFVK	1	Unmodified	1559.7468	0.74675201	4622	Q9H098	FAM107B	Protein FAM107B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	41.444	40.804	2	2.0388E-06	37075	160511_QHF_FH_JSI12i_1	120.53	82.225			1.3634	1.36	22.629	5	5	Median	1.634	1.342	NaN	1	1	Median	1.3598	1.6239	NaN	1	1	Median	1.3634	1.36	NaN	1	1	Median	1.1321	1.1652	36.002	2	2	Median	742650000	321420000	421240000	108370000	42521000	65845000	130840000	61819000	69020000	131990000	59005000	72989000	371460000	158070000	213380000	33352	4622	31549	206120;206121;206122;206123;206124	278546;278547;278548;278549;278550	278548			5	
LQEESEVLQK	1	Unmodified	1201.619	0.6190323	4798	Q9H974	QTRTD1	Queuine tRNA-ribosyltransferase subunit QTRTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.673	29.077	2	0.00097395	26108	160511_QHF_FH_JSI12i_1	68.657	49.386			0.89233	1.187	14.088	4	2	Linear	1.5307	1.2218	NaN	1	1	Median	0.97054	1.1532	NaN	1	0	Median	1.4193	1.3309	NaN	1	1	Median	0.92282	0.95465	NaN	1	0	Median	230540000	104560000	125980000	40103000	17177000	22925000	53514000	25917000	27597000	64044000	27986000	36059000	72878000	33483000	39395000	33353	4798	31550	206125;206126;206127;206128	278551;278552;278553	278552			3	
LQEETGAK	1	Unmodified	874.43961	0.43961137	2255	Q07666;Q5VWX1	KHDRBS1;KHDRBS2	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.7332	6.3975	2	0.0034061	4122	160511_QHF_FH_JSI11i_1	72.789	21.823			0.83703	0.90346	27.34	4	0	Median	1.4755	1.2334	NaN	1	0	Median	0.89673	1.0652	NaN	1	0	Median	0.78131	0.7663	NaN	1	0	Median	0.67673	0.68892	NaN	1	0	Median	459630000	226940000	232690000	147250000	58223000	89031000	74581000	41935000	32645000	121400000	67357000	54048000	116390000	59425000	56963000	33354	2255	31551	206129;206130;206131;206132	278554;278555;278556;278557;278558	278554			5	
LQEGYDHSYYFIATFITDHIR	0	Unmodified	2588.2336	0.23358835	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.171	84.82	3;4	2.0518E-146	47478	160513_QHF_FH_JSI11Kac_6	266.14	253.66			1.081	1.0482	13.663	8	2	Median	1.1352	0.98975	4.0473	2	0	Median	0.83111	0.98818	1.7621	2	1	Median	1.4086	1.3379	8.1498	2	1	Median	1.0341	1.0787	0.0074537	2	0	Median	11629000000	5599400000	6029800000	3299600000	1579000000	1720600000	3055500000	1757500000	1298000000	2748100000	1045600000	1702500000	2526100000	1217400000	1308700000	33355	979	31552	206133;206134;206135;206136;206137;206138;206139;206140	278559;278560;278561;278562;278563;278564;278565;278566;278567;278568;278569;278570;278571	278559			13	
LQEIDIFNNQLK	1	Unmodified	1473.7827	0.78274359	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0				By MS/MS	2	0		1											1	77.966	76.742	2	0.00069401	66321	160511_QHF_FH_JSI12i_2	71.03	50.727		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33356	2711	31553	206141	278572	278572			1	
LQEIYNR	0	Unmodified	934.48723	0.48723027	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	22.121	21.219	2	0.018889	18276	160511_QHF_FH_JSI10i_2	59.205	3.7642			1.0157	1.0507	40.345	2	0	Median	1.6132	1.3976	NaN	1	0	Median	0.63948	0.78993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103830000	50253000	53573000	56327000	23138000	33189000	47499000	27115000	20384000	0	0	0	0	0	0	33357	3915	31554	206142;206143;206144;206145	278573;278574;278575	278575			3	
LQELDGELEAALGLLDIILAK	1	Unmodified	2236.2566	0.2566152	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.09	99.367	3	2.1218E-08	58844	160513_QHF_FH_JSI10Kac_6	138.04	129.22			1.1163	1.2924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1163	1.2924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51849000	26485000	25364000	0	0	0	51849000	26485000	25364000	0	0	0	0	0	0	33358	3860	31555	206146	278576	278576			1	
LQELEANPPSDVYLSSR	0	Unmodified	1916.948	0.94797101	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.319	62.251	2	4.6477E-25	55314	160511_QHF_FH_JSI9i_1	143.86	101.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33359	412	31556	206147	278577	278577			1	
LQELIQK	1	Unmodified	870.51747	0.51746776	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	1	3	1	30.579	28.563	2	0.010183	25266	160511_QHF_FH_JSI11i_1	81.297	10.384			0.63364	0.68203	69.729	6	5	Median	0.23151	0.19331	NaN	1	1	Median	0.70291	0.84161	NaN	1	1	Median	0.57121	0.55271	56.227	3	2	Median	1.0865	1.1366	NaN	1	1	Median	2871400000	1988600000	882840000	584110000	460980000	123130000	589660000	376500000	213170000	1385300000	971890000	413440000	312310000	179200000	133110000	33360	127	31557	206148;206149;206150;206151;206152;206153	278578;278579;278580;278581;278582;278583	278578			6	
LQELNYNLK	1	Unmodified	1133.6081	0.60807369	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.74	46.081	2	0.057187	41902	160511_QHF_FH_JSI12i_1	34.253	15.159			0.59065	0.62461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59065	0.62461	NaN	1	0	Median	45320000	28361000	16959000	0	0	0	0	0	0	0	0	0	45320000	28361000	16959000	33361	1528	31558	206154	278584	278584			1	
LQELPDAVPHGEMPR	0	Unmodified	1687.8352	0.83518986	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								1	4	3	3	53.236	52.416	2;3	5.1061E-05	45196	160511_QHF_FH_JSI11i_2	141.38	127.22			1.0151	1.1043	19.701	10	2	Median	1.9668	1.715	NaN	1	1	Median	0.77913	0.94685	18.004	3	1	Median	0.99404	1.0194	4.0205	3	0	Median	1.1435	1.1485	3.4756	3	0	Plateau	2572100000	1350500000	1221600000	31530000	8033000	23497000	1072300000	585000000	487290000	718830000	402490000	316340000	749480000	355020000	394470000	33362	1410	31559	206155;206156;206157;206158;206159;206160;206161;206162;206163;206164;206165	278585;278586;278587;278588;278589;278590;278591;278592;278593;278594;278595;278596;278597;278598;278599;278600;278601;278602;278603	278600			19	
LQELSAEER	0	Unmodified	1073.5353	0.53530267	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		21.845	21.31	2	0.018073	18268	160511_QHF_FH_JSI11i_1	51.949	20.72			0.89806	0.90405	19.971	3	1	Plateau	1.1425	0.93561	NaN	1	0	Median	0.70589	0.84296	NaN	1	0	Median	0.65703	0.63597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1143600000	699160000	444460000	312070000	161900000	150170000	295670000	173470000	122200000	535880000	363790000	172090000	0	0	0	33363	4992	31560	206166;206167;206168	278604;278605;278606	278604			3	
LQELSSK	1	Unmodified	803.43888	0.43888309	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2			1	2	3	2	13.896	11.725	2	0.0069761	9955	160511_QHF_FH_JSI10i_1	89.142	29.501			0.96986	1.0556	35.875	8	2	Median	0.49416	0.42716	NaN	1	1	Median	0.96986	1.1598	8.3208	2	0	Median	1.0432	1.019	24.616	3	1	Median	0.86057	0.92593	28.741	2	0	Median	3966100000	2122600000	1843500000	184310000	110950000	73354000	1394000000	727180000	666850000	1363700000	754290000	609400000	1024100000	530160000	493920000	33364	1650	31561	206169;206170;206171;206172;206173;206174;206175;206176	278607;278608;278609;278610;278611;278612;278613;278614;278615	278609			9	
LQELTDLLQEK	1	Unmodified	1328.7187	0.71874635	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	76.471	75.808	2	7.1498E-05	68724	160511_QHF_FH_JSI10i_1	91.937	61.683			0.96711	0.93996	22.808	8	2	Median	1.0977	0.90192	11.215	2	1	Median	0.88892	1.0584	35.144	2	0	Median	1.0799	1.0556	21.787	2	0	Median	0.77369	0.81329	28.521	2	1	Median	291070000	140830000	150240000	42882000	22058000	20824000	78759000	39177000	39582000	90691000	35202000	55489000	78739000	44392000	34347000	33365	2988	31562	206177;206178;206179;206180;206181;206182;206183;206184	278616;278617;278618;278619;278620;278621	278620			6	
LQEMEGTVK	1	Unmodified	1033.5114	0.51139611	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	5.13	5	1				2				2	3	2	1	23.935	20.87	2	0.00051496	18040	160511_QHF_FH_JSI10i_2	89.355	9.7577			0.97166	1.0607	13.146	6	1	Median	NaN	NaN	NaN	0	0	Median	0.81403	0.96425	17.1	3	1	Median	1.1274	1.0841	4.4177	2	0	Median	1.0073	1.0708	NaN	1	0	Median	3048800000	1467100000	1581700000	0	0	0	925100000	484460000	440640000	1050200000	463700000	586490000	1073500000	518970000	554570000	33366	1436	31563	206185;206186;206187;206188;206189;206190;206191;206192	278622;278623;278624;278625;278626;278627;278628;278629;278630	278630			9	
LQEMEGTVK	1	Oxidation (M)	1049.5063	0.50631073	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	14.748	14.24	2	0.0066161	18025	160511_QHF_FH_JSI10i_1	56.916	17.953			0.85537	0.82872	65.365	6	1	Median	0.51675	0.42648	92.528	2	1	Median	0.46947	0.54026	89.341	2	0	Median	0.87878	0.83708	NaN	1	0	Median	0.83259	0.85234	NaN	1	0	Median	793550000	507330000	286220000	246470000	164190000	82277000	323790000	206500000	117290000	106240000	61755000	44487000	117060000	74884000	42171000	33367	1436	31563	206193;206194;206195;206196;206197;206198	278631;278632;278633;278634	278633		1102	4	
LQEMRAQRR	0	Unmodified	1186.6353	0.63530826	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	2			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	29.539	28.961	3	0.056734	24578	160511_QHF_FH_JSI11i_2	45.997	28.971			0.38869	0.41728	49.99	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26806	0.2746	NaN	1	0	Median	0.37831	0.40591	63.085	2	0	Median	1158300000	813580000	344700000	0	0	0	0	0	0	429890000	329180000	100700000	728400000	484400000	244000000	33368	2605	31564	206199;206200;206201	278635	278635			0	
LQENLQQLQHSTNQLAK	1	Unmodified	1992.0389	0.038851707	3384	Q86Y82	STX12	Syntaxin-12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	48.581	47.957	3	3.6855E-06	41303	160511_QHF_FH_JSI11i_2	94.01	77.872			1.0557	1.1613	23.333	5	3	Median	NaN	NaN	NaN	0	0	Median	0.6939	0.84932	NaN	1	1	Median	0.98263	0.94739	28.796	2	1	Median	1.182	1.2483	9.938	2	1	Median	336230000	176450000	159780000	0	0	0	86156000	54133000	32024000	133970000	68650000	65321000	116100000	53666000	62436000	33369	3384	31565	206202;206203;206204;206205;206206	278636;278637;278638;278639;278640;278641;278642	278638			7	
LQEQFDEQSK	1	Unmodified	1250.5779	0.57789577	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.421	22.145	2	0.00034398	19143	160511_QHF_FH_JSI11i_1	87.149	51.854			0.69453	0.7906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69453	0.7906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21221000	11811000	9410000	0	0	0	21221000	11811000	9410000	0	0	0	0	0	0	33370	2574	31566	206207;206208	278643;278644	278643			2	
LQEQHPDGNFGAMWLFFGCR	0	Unmodified	2409.0783	0.078290456	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		91.069	83.529	3	1.1816E-13	48126	160513_QHF_FH_JSI10Kac_6	126.91	118.09			1.0853	1.1458	18.092	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0974	1.3022	NaN	1	0	Median	1.0732	1.0082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	307940000	133230000	174710000	0	0	0	163890000	75870000	88024000	144040000	57359000	86684000	0	0	0	33371	5239	31567	206209;206210	278645;278646	278646			2	
LQEQLPELLEIIKPK	2	Unmodified	1790.0553	0.055336619	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		100.48	100.48	3	0.0026324	89470	160511_QHF_FH_JSI11i_3	50.608	44.577			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33372	2572	31568	206211;206212	278647;278648	278647			2	
LQEQQKK	2	Unmodified	900.50288	0.50288033	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			24.774	24.48	2	0.037832	21695	160511_QHF_FH_JSI10i_1	48.761	4.0394			0.56059	0.6683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56059	0.6683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	263230000	144470000	118770000	0	0	0	263230000	144470000	118770000	0	0	0	0	0	0	33373	285	31569	206213	278649;278650	278649			2	
LQEQVTDLR	0	Unmodified	1100.5826	0.58258722	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	1	2	34.29	31.551	2	0.00010378	28280	160511_QHF_FH_JSI10i_1	111.46	45.382			0.65769	0.72913	15.087	4	4	Median	NaN	NaN	NaN	0	0	Median	0.62506	0.74037	NaN	1	1	Median	0.74346	0.72854	NaN	1	1	Median	0.58838	0.62899	21.01	2	2	Median	1178100000	748450000	429680000	0	0	0	484850000	339510000	145330000	392000000	233750000	158260000	301270000	175190000	126080000	33374	1016	31570	206214;206215;206216;206217	278651;278652;278653;278654	278653			4	
LQESPEDMPAGQTPHTVILFAHNDLVDK	1	Oxidation (M)	3117.5077	0.5077143	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									1	3	70.65	70.451	3;4	6.8798E-32	61062	160511_QHF_FH_JSI12i_3	141.49	138.66			0.88218	0.92973	16.654	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77987	0.72086	NaN	1	0	Median	0.9268	0.95753	4.1672	2	1	Median	328590000	166930000	161650000	0	0	0	0	0	0	149160000	84795000	64363000	179430000	82138000	97290000	33375	1409	31571	206218;206219;206220;206221	278655;278656;278657;278658;278659	278657		1054	5	
LQESPEDMPAGQTPHTVILFAHNDLVDK	1	Unmodified	3101.5128	0.51279968	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.61		7	4						3	3	2	5	4	78.024	75.642	3;4	7.9559E-59	38196	160513_QHF_FH_JSI11Kac_6	175.86	164.1			0.95431	0.93189	21.764	14	1	Median	1.209	1.048	19.845	3	0	Median	0.65231	0.80353	1.5901	2	0	Median	0.92444	0.87139	8.0462	5	1	Median	0.7584	0.77376	27.565	4	0	Linear	3456600000	1825400000	1631200000	474280000	218420000	255860000	415000000	269040000	145960000	1709100000	899930000	809120000	858280000	438030000	420250000	33376	1409	31571	206222;206223;206224;206225;206226;206227;206228;206229;206230;206231;206232;206233;206234;206235	278660;278661;278662;278663;278664;278665;278666;278667;278668;278669;278670;278671;278672;278673;278674;278675;278676;278677;278678;278679;278680;278681;278682;278683	278665			24	
LQESQPGNAVIDK	1	Unmodified	1397.7151	0.71505795	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				2	3	1	3	32.384	26.269	2;3	8.3733E-32	5859	160513_QHF_FH_JSI9Kac_3	201	124.17			1.0148	1.0758	36.695	9	1	Median	1.3431	1.1147	24.708	2	0	Median	0.92394	1.0758	62.519	3	1	Median	1.159	1.1054	NaN	1	0	Median	0.88741	0.95141	10.957	3	0	Plateau	397680000	194080000	203610000	152190000	68690000	83503000	63886000	32792000	31095000	38479000	20396000	18083000	143130000	72201000	70925000	33377	3061	31572	206236;206237;206238;206239;206240;206241;206242;206243;206244	278684;278685;278686;278687;278688;278689;278690;278691;278692;278693;278694;278695;278696;278697	278690			14	
LQESTQTVQSLHGSSR	0	Unmodified	1756.8704	0.8703894	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	22.569	22.104	3	6.7743E-06	18251	160511_QHF_FH_JSI12i_3	102.58	90.292			0.99103	0.97058	6.6601	4	0	Median	1.1859	1.0022	NaN	1	0	Median	0.78562	0.93996	NaN	1	0	Median	0.97711	0.90884	NaN	1	0	Median	1.0051	1.0554	NaN	1	0	Median	208010000	117730000	90286000	40768000	21033000	19735000	50566000	32758000	17808000	67885000	36236000	31649000	48792000	27697000	21094000	33378	5677	31573	206245;206246;206247;206248	278698;278699;278700;278701;278702;278703	278703			6	
LQETEMMDPELDYTLMR	0	Unmodified	2113.937	0.93701368	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.76	88.323	2	1.3198E-15	80194	160511_QHF_FH_JSI10i_1	161.76	146.88			1.1246	1.1416	14.113	4	1	Median	1.8247	1.4686	NaN	1	1	Median	0.91727	1.0959	NaN	1	0	Median	1.2208	1.1891	NaN	1	0	Median	1.036	1.0823	NaN	1	0	Median	181930000	89704000	92229000	19421000	4988800	14432000	67648000	39820000	27828000	52790000	20357000	32433000	42073000	24537000	17536000	33379	3903	31574	206249;206250;206251;206252	278704;278705;278706;278707;278708;278709;278710;278711	278710			8	
LQETLSAADR	0	Unmodified	1102.5619	0.56185177	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.83	4	3				2	2			2	2	4	3	27.735	24.123	2	7.3935E-06	21546	160511_QHF_FH_JSI12i_1	107.15	35.653			0.88282	0.9417	14.571	11	0	Median	1.157	0.96384	7.2599	2	0	Median	0.78319	0.94999	17.944	2	0	Median	0.95985	0.94588	21.266	4	0	Median	0.80678	0.85181	10.471	3	0	Median	3103100000	1564600000	1538500000	652540000	295540000	356990000	860680000	514380000	346300000	830640000	387410000	443220000	759280000	367260000	392020000	33380	2094	31575	206253;206254;206255;206256;206257;206258;206259;206260;206261;206262;206263	278712;278713;278714;278715;278716;278717;278718;278719;278720;278721;278722;278723;278724;278725;278726;278727;278728	278715			17	
LQETQMSTTSK	1	Unmodified	1252.5969	0.59691665	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	14.916	14.65	2	0.00039109	12408	160511_QHF_FH_JSI10i_1	72.2	40.779			1.1868	1.1383	26.005	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1228	1.3058	NaN	1	0	Median	1.1868	1.1383	NaN	1	0	Median	0.78237	0.78957	NaN	1	0	Median	116100000	53542000	62557000	0	0	0	41288000	26340000	14947000	47688000	13399000	34289000	27124000	13802000	13321000	33381	1489;2481	31576	206264;206265;206266	278729;278730	278729			2	
LQETSSQSYVEEQK	1	Unmodified	1654.7686	0.76860967	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	25.209	24.698	2	3.4825E-06	21609	160511_QHF_FH_JSI10i_1	127.37	101.99			1.3757	1.2265	36.612	6	4	Median	1.3773	1.1097	NaN	1	0	Median	0.95924	1.0882	51.297	2	2	Median	1.418	1.3555	NaN	1	0	Median	1.2687	1.3393	58.62	2	2	Median	230350000	108310000	122040000	40661000	19054000	21607000	60630000	31863000	28767000	48762000	25683000	23079000	80300000	31713000	48587000	33382	3580	31577	206267;206268;206269;206270;206271;206272	278731;278732;278733;278734;278735;278736;278737;278738	278736			8	
LQETTLVANQLR	0	Unmodified	1384.7674	0.76742787	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	51.185	50.229	2	0.00079788	44292	160511_QHF_FH_JSI10i_2	67.704	27.703			0.60642	0.75192	14.868	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.54271	0.66353	NaN	1	0	Median	0.84109	0.85208	NaN	1	1	Median	0.60642	0.65416	NaN	1	1	Median	129290000	83491000	45800000	0	0	0	23442000	16756000	6686200	63023000	36670000	26353000	42826000	30065000	12761000	33383	163	31578	206273;206274;206275	278739;278740;278741	278741			3	
LQEVECEEQR	0	Unmodified	1318.5823	0.58232922	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	15.907	15.623	2	0.0004516	13102	160511_QHF_FH_JSI11i_1	74.162	61.635			1.0951	1.1014	48.786	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81353	0.78005	NaN	1	0	Median	1.4742	1.5551	NaN	1	0	Median	49276000	24146000	25130000	0	0	0	0	0	0	25658000	13681000	11977000	23619000	10466000	13153000	33384	2448	31579	206276;206277	278742;278743	278742			2	
LQEVEVPEDFGPVR	0	Unmodified	1612.8097	0.80968662	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	70.247	69.669	2;3	4.1411E-10	63421	160511_QHF_FH_JSI11i_1	178.81	138.23			0.95016	1.0009	12.296	9	1	Median	1.2886	1.0525	3.7687	2	0	Median	0.85388	1.0009	3.4888	3	1	Median	1.0446	1.003	14.542	2	0	Median	0.84864	0.85717	21.484	2	0	Median	1084100000	543880000	540230000	251090000	110370000	140720000	314910000	174590000	140320000	310730000	156620000	154100000	207380000	102300000	105090000	33385	737	31580	206278;206279;206280;206281;206282;206283;206284;206285;206286	278744;278745;278746;278747;278748;278749;278750;278751;278752;278753;278754	278745			11	
LQEVFGHAIK	1	Unmodified	1140.6291	0.62914348	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.11		8	5						5	4	4	4	6	42.194	39.676	2;3	0.00028145	34063	160511_QHF_FH_JSI12i_2	91.087	48.218			0.91635	0.97894	72.077	14	8	Median	1.2504	1.0778	52.116	4	2	Median	0.75858	0.92495	22.889	2	1	Median	0.85195	0.86944	101.01	3	2	Median	1.0367	1.1395	93.898	5	3	Median	3232900000	1694800000	1538100000	421750000	201870000	219880000	505610000	270300000	235310000	1192600000	647840000	544790000	1112900000	574760000	538150000	33386	1818	31581	206287;206288;206289;206290;206291;206292;206293;206294;206295;206296;206297;206298;206299;206300;206301;206302;206303;206304	278755;278756;278757;278758;278759;278760;278761;278762;278763;278764;278765;278766;278767;278768;278769;278770;278771;278772;278773;278774;278775;278776;278777	278760			23	
LQEVIETLLSLEK	1	Unmodified	1513.8603	0.86032521	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.272	87.552	2	0.0014043	50225	160513_QHF_FH_JSI10Kac_6	82.774	57.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33387	110	31582	206305	278778	278778			1	
LQEVLDYLTNSASLQMK	1	Unmodified	1951.9925	0.99247837	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	97.008	96.605	3	3.9676E-05	83008	160511_QHF_FH_JSI12i_2	86.455	70.611			1.5816	1.7476	180.76	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5816	1.7476	180.76	2	2	Median	23230000	10947000	12283000	0	0	0	0	0	0	0	0	0	23230000	10947000	12283000	33388	3695	31583	206306;206307;206308	278779;278780;278781	278779			3	
LQEYNVGGK	1	Unmodified	1006.5084	0.50835964	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			20.619	20.356	2	0.0033578	17543	160511_QHF_FH_JSI10i_1	70.919	32.681			1.0406	1.2247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0406	1.2247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88596000	46948000	41648000	0	0	0	88596000	46948000	41648000	0	0	0	0	0	0	33389	1585	31584	206309	278782	278782			1	
LQFAPFSSALDVGFWHELTQKK	2	Unmodified	2548.3114	0.31144474	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	101.52	101.53	4	0.054854	90607	160511_QHF_FH_JSI11i_3	13.188	2.0447			0.83559	0.81903	0.18358	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85072	0.82009	NaN	1	0	Median	0.82074	0.81797	NaN	1	0	Median	1156900000	654330000	502560000	0	0	0	0	0	0	237110000	139150000	97959000	919780000	515180000	404600000	33390	680	31585	206310;206311	278783	278783			1	
LQFHDVAGDIFHQQCK	1	Unmodified	1941.9156	0.91556545	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	65.187	64.706	2;3;4	1.627E-22	55752	160511_QHF_FH_JSI12i_3	201.95	178.72			1.1186	1.2426	26.935	8	0	Median	NaN	NaN	NaN	0	0	Median	1.1186	1.3243	3.3673	2	0	Median	0.77985	0.73829	9.0936	3	0	Plateau	1.2614	1.2582	6.7668	3	0	Plateau	3895800000	1865300000	2030500000	0	0	0	194720000	83625000	111100000	1332200000	786930000	545310000	2368800000	994710000	1374100000	33391	1000	31586	206312;206313;206314;206315;206316;206317;206318;206319	278784;278785;278786;278787;278788;278789;278790;278791;278792;278793;278794;278795;278796;278797;278798;278799;278800;278801;278802;278803;278804;278805	278805			22	
LQFHTGAVQGYGLVFGK	1	Unmodified	1820.9574	0.95735391	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.824	70.461	3	2.1295E-08	38346	160513_QHF_FH_JSI11Kac_6	117.3	106.44			0.8415	0.9085	13.17	4	0	Median	1.2298	1.0495	NaN	1	0	Median	0.71092	0.84722	NaN	1	0	Median	0.79085	0.7847	NaN	1	0	Median	0.89539	0.9742	NaN	1	0	Median	280700000	133220000	147480000	102830000	38060000	64774000	121870000	67599000	54269000	34192000	16638000	17554000	21807000	10924000	10882000	33392	3024	31587	206320;206321;206322;206323	278806;278807;278808;278809	278806			3	
LQFIADHCPTLR	0	Unmodified	1469.7449	0.74491829	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			4								2	2		53.89	53.372	2;3	5.9239E-05	44759	160511_QHF_FH_JSI10i_3	77.279	64.652			0.80132	0.89827	22.104	3	2	Median	NaN	NaN	NaN	0	0	Median	0.80132	0.91816	NaN	1	0	Median	0.80457	0.74602	26.264	2	2	Median	NaN	NaN	NaN	0	0	Median	273320000	137730000	135590000	0	0	0	73900000	32131000	41769000	199420000	105600000	93821000	0	0	0	33393	2349	31588	206324;206325;206326;206327	278810;278811;278812;278813;278814	278813			5	
LQFLFAK	1	Unmodified	865.50617	0.5061748	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	1	3	1	72.942	70.749	2	0.029275	59743	160511_QHF_FH_JSI10i_3	52.683	26.574			1.0949	1.1123	22.719	6	0	Median	1.3183	1.1007	NaN	1	0	Median	0.97645	1.1241	NaN	1	0	Median	1.0095	0.94812	27.866	3	0	Median	1.1875	1.3019	NaN	1	0	Median	252450000	127100000	125340000	34998000	15776000	19222000	36849000	20091000	16759000	109580000	56016000	53564000	71021000	35222000	35799000	33394	3260	31589	206328;206329;206330;206331;206332;206333	278815;278816;278817;278818;278819	278815			5	
LQFPLPTAQR	0	Unmodified	1169.6557	0.65569258	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	67.423	66.629	2	0.00077936	57734	160511_QHF_FH_JSI12i_3	69.825	48.318			0.91047	0.87585	54.429	7	0	Median	0.98822	0.83097	23.385	2	0	Median	0.69373	0.82887	34.245	2	0	Median	0.45193	0.43899	97.682	2	0	Median	0.91047	0.96122	NaN	1	0	Median	363000000	228250000	134750000	72051000	42096000	29954000	82542000	48758000	33783000	149380000	107560000	41827000	59028000	29843000	29185000	33395	1739	31590	206334;206335;206336;206337;206338;206339;206340	278820;278821;278822;278823;278824;278825;278826;278827;278828	278828			8	
LQFQQQQNSIHAAK	1	Unmodified	1639.8431	0.84305243	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4	4.02		3	6						1	3	5	2		30.767	28.678	2;3	4.7487E-05	23233	160511_QHF_FH_JSI9i_3	90.412	83.683			0.86801	0.82749	37.696	7	3	Median	1.1778	0.99702	40.445	2	0	Median	0.75466	0.87073	45.421	4	3	Median	0.87708	0.80557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	399210000	215320000	183880000	116180000	57337000	58842000	144110000	81899000	62211000	138920000	76084000	62832000	0	0	0	33396	3128	31591	206341;206342;206343;206344;206345;206346;206347;206348;206349;206350	278829;278830;278831;278832;278833;278834;278835;278836;278837;278838;278839;278840;278841	278836			13	
LQFSEQVENIKPEIVSVTAACEELRK	2	Unmodified	3016.5539	0.55393621	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		89.521	89.521	4	0.020909	79802	160511_QHF_FH_JSI11i_3	29.47	23.309			0.66189	0.62985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66189	0.62985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26677000	20115000	6562200	0	0	0	0	0	0	26677000	20115000	6562200	0	0	0	33397	432	31592	206351	278842	278842			1	
LQFSLKK	2	Unmodified	862.52764	0.52763852	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		36.038	36.038	3	0.032869	31477	160511_QHF_FH_JSI11i_3	32.841	8.6857			0.33538	0.30728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33538	0.30728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28165000	18140000	10025000	0	0	0	0	0	0	28165000	18140000	10025000	0	0	0	33398	1172	31593	206352	278843	278843			1	
LQFSYVECLLYSFHQLGR	0	Unmodified	2259.1147	0.11465919	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.903	88.494	3	4.295E-34	52708	160513_QHF_FH_JSI10Kac_6	173.27	151.65			1.1026	1.1402	11.882	4	0	Median	1.4399	1.2542	NaN	1	0	Median	0.88628	1.0597	NaN	1	0	Median	1.0425	0.9785	NaN	1	0	Median	1.166	1.2268	NaN	1	0	Median	1693000000	752620000	940380000	261670000	108880000	152790000	588680000	289380000	299290000	367970000	163910000	204070000	474690000	190450000	284230000	33399	4575	31594	206353;206354;206355;206356	278844;278845;278846;278847	278847			4	
LQFTPQHK	1	Unmodified	997.53451	0.53451481	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	5	3	2	3	21.556	19.656	2;3	0.00038386	16370	160511_QHF_FH_JSI11i_3	79.906	59.603			1.0314	1.0831	27.426	13	3	Median	1.1587	0.97431	36.526	5	2	Median	1.0314	1.1976	7.2547	3	1	Median	0.73984	0.71347	3.7052	2	0	Median	1.0986	1.1039	12.065	3	0	Plateau	3064400000	1593700000	1470800000	486960000	205820000	281140000	484090000	265300000	218780000	690730000	372680000	318050000	1402700000	749850000	652810000	33400	3965	31595	206357;206358;206359;206360;206361;206362;206363;206364;206365;206366;206367;206368;206369	278848;278849;278850;278851;278852;278853;278854;278855;278856;278857;278858;278859;278860;278861;278862;278863;278864;278865;278866;278867	278850			20	
LQGAASHVPEGFDPTGPAGLGRPTPGLSQGPGK	1	Unmodified	3152.6003	0.60030955	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				64.811	63.309	4	0.027055	52005	160511_QHF_FH_JSI9i_3	19.903	9.6648			0.85164	0.69032	NaN	1	1	Median	0.85164	0.69032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25870000	18563000	7307200	25870000	18563000	7307200	0	0	0	0	0	0	0	0	0	33401	4805	31596	206370	278868	278868			1	
LQGATCNNNK	1	Unmodified	1118.5139	0.51385572	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	5.6572	5.3771	2	3.2213E-08	3376	160511_QHF_FH_JSI10i_1	125.82	101.66			1.2307	1.2661	63.096	5	4	Median	3.2561	2.6546	NaN	1	1	Median	1.0682	1.2661	NaN	1	0	Median	0.7865	0.76261	61.623	2	2	Median	1.7859	1.8731	NaN	1	1	Median	542850000	261730000	281120000	55928000	18961000	36967000	94306000	46236000	48070000	271000000	148160000	122840000	121620000	48373000	73248000	33402	2517	31597	206371;206372;206373;206374;206375	278869;278870;278871;278872;278873	278872			5	
LQGDANNLHGFEVDSR	0	Unmodified	1770.8285	0.82852458	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2								2	1	3	42.745	42.058	2;3	2.6166E-05	37047	160511_QHF_FH_JSI10i_2	70.334	53.115			1.4572	1.4997	29.671	6	4	Median	NaN	NaN	NaN	0	0	Median	1.3276	1.6149	16.741	2	2	Median	0.95721	0.89285	NaN	1	1	Median	1.531	1.5373	21.048	3	1	Median	539420000	243450000	295980000	0	0	0	272000000	119050000	152960000	67537000	37994000	29543000	199880000	86405000	113480000	33403	1771	31598	206376;206377;206378;206379;206380;206381	278874;278875;278876;278877;278878;278879	278877			6	
LQGEHSQNGEEEPETEPVGEESISDAEK	1	Unmodified	3053.3221	0.32214118	2882	Q5EBL4	RILPL1	RILP-like protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.65	40.03	3	6.1934E-12	36334	160511_QHF_FH_JSI12i_1	85	82.686			0.71599	0.73309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71599	0.73309	NaN	1	0	Median	33447000	20206000	13242000	0	0	0	0	0	0	0	0	0	33447000	20206000	13242000	33404	2882	31599	206382	278880;278881	278881			2	
LQGEMAHIQVGQMTQAGLLEHLK	1	Unmodified	2531.2988	0.29884792	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.339	78.084	4	1.9092E-06	67818	160511_QHF_FH_JSI12i_3	66.871	58.974			1.2014	1.2303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2014	1.2303	NaN	1	0	Median	41343000	23884000	17459000	0	0	0	0	0	0	0	0	0	41343000	23884000	17459000	33405	2269	31600	206383	278882;278883	278883			2	
LQGEVVAFDYQSK	1	Unmodified	1482.7355	0.73545904	2818	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.312	56.66	2	1.005E-06	51105	160511_QHF_FH_JSI10i_1	127.56	99.546			0.66702	0.74689	17.462	4	1	Linear	0.81565	0.66649	NaN	1	0	Median	0.60399	0.70715	NaN	1	0	Median	0.81241	0.78886	NaN	1	0	Median	0.97965	0.99036	NaN	1	1	Median	515610000	273490000	242110000	90741000	39164000	51577000	147250000	84545000	62700000	146730000	87355000	59374000	130890000	62429000	68463000	33406	2818	31601	206384;206385;206386;206387	278884;278885;278886;278887;278888;278889;278890	278889			7	
LQGIDLDR	0	Unmodified	928.49779	0.49779495	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		41.37	41.026	2	0.020984	36954	160511_QHF_FH_JSI11i_1	56.011	10.293			2.6397	2.567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6397	2.567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74338000	19107000	55231000	0	0	0	0	0	0	74338000	19107000	55231000	0	0	0	33407	3896	31602	206388	278891	278891			1	
LQGKINDEDK	2	Unmodified	1158.5881	0.58806652	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.9409	9.0384	2	0.013842	6433	160511_QHF_FH_JSI12i_3	69.276	31.548			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33408	985	31603	206389	278892	278892			1	
LQGKPQSHELK	2	Unmodified	1263.6935	0.69353465	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		7.8174	7.8174	2	0.005665	5464	160511_QHF_FH_JSI11i_3	74.162	43.908			0.9258	0.87863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9258	0.87863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24808000	18017000	6790900	0	0	0	0	0	0	24808000	18017000	6790900	0	0	0	33409	3404	31604	206390;206391;206392	278893;278894;278895	278894			3	
LQGLLETLLGYTAAIPFWR	0	Unmodified	2161.1936	0.19356144	4589	Q9C0H2	TTYH3	Protein tweety homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			102.22	94.766	2;3	3.9943E-86	57041	160513_QHF_FH_JSI10Kac_6	223.72	186.87			0.85029	0.97571	29.025	3	0	Median	1.6141	1.366	NaN	1	0	Median	0.74585	0.86478	17.068	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239410000	104750000	134660000	59203000	14973000	44229000	180210000	89777000	90433000	0	0	0	0	0	0	33410	4589	31605	206393;206394;206395;206396	278896;278897;278898;278899	278899			4	
LQGLPIVAGTMDIR	0	Unmodified	1482.8228	0.82283426	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		87.727	87.308	2	0.00035303	76976	160511_QHF_FH_JSI9i_2	78.342	48.598			0.79043	0.82142	5.4003	4	2	Median	0.85258	0.73936	NaN	1	0	Median	0.70783	0.82142	0.10812	2	1	Median	0.83027	0.82764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111340000	63424000	47921000	30197000	16023000	14174000	40217000	23842000	16375000	40931000	23558000	17372000	0	0	0	33411	4996	31606	206397;206398;206399;206400	278900;278901;278902;278903	278901			3	
LQGLSSLMYASESK	1	Unmodified	1512.7494	0.74939455	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	69.71	69.345	2	9.1625E-05	60117	160511_QHF_FH_JSI12i_3	112.44	88.146			0.87984	0.87401	20.883	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.49627	0.60583	NaN	1	1	Median	0.91725	0.86552	NaN	1	0	Median	0.87984	0.87401	NaN	1	0	Median	173850000	97126000	76726000	0	0	0	39235000	23532000	15703000	57619000	30803000	26817000	76998000	42792000	34207000	33412	3539	31607	206401;206402;206403	278904;278905;278906;278907	278906			4	
LQGPQTSAEVYR	0	Unmodified	1347.6783	0.67827852	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	32.532	31.677	2	0.012648	26850	160511_QHF_FH_JSI12i_2	45.161	29.499			1.1949	1.2333	64.696	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9353	1.9487	NaN	1	1	Median	0.73773	0.78053	NaN	1	0	Median	47902000	20156000	27746000	0	0	0	0	0	0	24406000	7777400	16629000	23495000	12378000	11117000	33413	3513	31608	206404;206405	278908;278909	278908			2	
LQGQDSER	0	Unmodified	931.43592	0.43592298	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	5.1686	-2.1042	2	0.043731	1654	160513_QHF_FH_JSI12Kac_3	45.718	15			1.0893	1.1023	14.051	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74038	0.87772	NaN	1	0	Median	1.1934	1.1624	NaN	1	0	Median	0.92844	1.0042	NaN	1	0	Median	9905100	4770800	5134300	0	0	0	2004000	1101300	902710	4148400	1587900	2560600	3752600	2081600	1671000	33414	5378	31609	206406;206407;206408	278910;278911	278910			2	
LQGQITEGSNMIK	1	Unmodified	1417.7235	0.72351415	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		41.626	41.282	2	0.015592	37335	160511_QHF_FH_JSI11i_1	51.998	27.16			1.1389	1.1054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1389	1.1054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45775000	17984000	27791000	0	0	0	0	0	0	45775000	17984000	27791000	0	0	0	33415	666	31610	206409	278912	278912			1	
LQGQLEQGDDTAAER	0	Unmodified	1629.7594	0.75944196	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	23.44	22.897	2	6.6656E-15	19674	160511_QHF_FH_JSI9i_1	163.99	127.57			0.84531	0.81012	8.5654	4	0	Median	0.99885	0.80359	NaN	1	0	Median	0.67411	0.81672	NaN	1	0	Median	0.79176	0.76956	NaN	1	0	Median	0.90249	0.93809	NaN	1	0	Median	310420000	167480000	142940000	60325000	29995000	30330000	65401000	39843000	25558000	89920000	54490000	35430000	94771000	43149000	51622000	33416	3634	31611	206410;206411;206412;206413	278913;278914;278915;278916	278916			4	
LQGQLEQGDDTAAERLEK	1	Unmodified	1999.9811	0.98106206	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	1	2	3	38.463	37.682	2;3	3.7024E-06	33007	160511_QHF_FH_JSI10i_2	95.814	85.156			0.94911	0.94347	31.627	7	2	Median	1.565	1.3296	50.797	2	1	Median	0.82008	0.99745	NaN	1	0	Median	1.0245	1.0056	15.274	2	0	Median	0.74454	0.79759	23.754	2	1	Median	1115100000	569700000	545350000	184830000	87022000	97806000	249540000	136100000	113440000	384550000	176760000	207800000	296130000	169820000	126310000	33417	3634	31612	206414;206415;206416;206417;206418;206419;206420;206421	278917;278918;278919;278920;278921;278922;278923;278924;278925;278926;278927;278928;278929;278930	278926			14	
LQGSGVSLASK	1	Unmodified	1045.5768	0.57677356	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.66		4					2			1	2	2	1	29.146	25.421	2	9.2248E-05	21258	160511_QHF_FH_JSI11i_2	88.496	66.364			0.78327	0.82309	27.288	6	1	Median	1.4356	1.2464	NaN	1	0	Median	0.58207	0.70192	38.252	2	1	Median	0.7991	0.79452	2.5038	2	0	Median	0.76924	0.83774	NaN	1	0	Median	391620000	208530000	183090000	105920000	48510000	57414000	58812000	38502000	20309000	143470000	81160000	62315000	83415000	40362000	43052000	33418	2286	31613	206422;206423;206424;206425;206426;206427	278931;278932;278933;278934;278935;278936;278937	278935			7	
LQGSGVSLASKK	2	Unmodified	1173.6717	0.67173657	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.856	17.895	3	0.0067982	14425	160511_QHF_FH_JSI12i_3	31.345	22.97			0.66491	0.67448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66491	0.67448	NaN	1	0	Median	167040000	111970000	55072000	0	0	0	0	0	0	0	0	0	167040000	111970000	55072000	33419	2286	31614	206428	278938	278938			1	
LQGSGVTVNALHPGVAR	0	Unmodified	1674.9166	0.91655173	3599	Q8NBN7	RDH13	Retinol dehydrogenase 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			44.828	43.255	3	5.6862E-06	36083	160511_QHF_FH_JSI10i_3	92.633	62.696			0.9312	0.92354	2.1569	2	0	Median	1.1468	0.93774	NaN	1	0	Median	0.75615	0.90956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151050000	84348000	66706000	60691000	30295000	30396000	90363000	54053000	36310000	0	0	0	0	0	0	33420	3599	31615	206429;206430	278939;278940;278941	278940			3	
LQGVGALGQAASDNSGPEDAK	1	Unmodified	1983.9498	0.94976193	2895	Q5JPE7;P69849	NOMO2;NOMO3	Nodal modulator 2;Nodal modulator 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	47.931	47.25	2;3	5.7501E-28	41956	160511_QHF_FH_JSI9i_1	219.52	186.46			0.77005	0.8432	45.787	8	1	Median	0.66258	0.54941	72.44	2	1	Median	0.74992	0.89387	20.113	2	0	Median	0.94049	0.92032	55.316	2	0	Median	0.90935	0.94199	44.43	2	0	Median	390600000	231310000	159290000	72003000	40180000	31823000	93831000	61595000	32236000	99321000	51871000	47450000	125450000	77669000	47781000	33421	2895	31616	206431;206432;206433;206434;206435;206436;206437;206438	278942;278943;278944;278945;278946;278947;278948;278949;278950;278951	278950			9	
LQHAAELIK	1	Unmodified	1021.592	0.59202969	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.9		7	5						4	3	2	4	7	25.59	22.847	2;3	0.00013012	18712	160511_QHF_FH_JSI12i_3	108.74	31.46			1.5971	1.6471	78.819	15	11	Median	1.1916	1.0458	74.289	2	1	Median	0.75539	0.92575	125.77	2	2	Median	1.4763	1.4405	32.98	4	3	Median	1.5971	1.7613	96.338	7	5	Median	1112300000	475660000	636680000	99054000	48835000	50219000	167040000	80106000	86935000	430100000	188590000	241510000	416150000	158140000	258010000	33422	3766	31617	206439;206440;206441;206442;206443;206444;206445;206446;206447;206448;206449;206450;206451;206452;206453;206454	278952;278953;278954;278955;278956;278957;278958;278959;278960;278961;278962;278963;278964;278965;278966;278967;278968	278966			17	
LQHAAQMEQK	1	Unmodified	1182.5815	0.58154136	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	3	1	8.0251	7.8545	2	0.00036209	5280	160511_QHF_FH_JSI12i_3	89.886	60.799			0.79131	0.73814	42.535	4	4	Median	0.92633	0.81258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51702	0.48546	45.672	2	2	Median	0.8873	0.91119	NaN	1	1	Median	145650000	82989000	62660000	15344000	6969500	8374600	8185000	8185000	0	56539000	34250000	22289000	65580000	33585000	31996000	33423	2547	31618	206455;206456;206457;206458;206459;206460;206461	278969;278970;278971;278972;278973;278974;278975	278975			7	
LQHGSILGFPK	1	Unmodified	1195.6713	0.67134264	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							4	5	2	2	50.494	49.444	2;3	4.351E-06	40534	160511_QHF_FH_JSI9i_3	103.91	90.14			0.94773	0.95254	34.334	11	1	Median	1.144	0.9416	55.676	4	1	Median	0.77753	0.91084	24.802	3	0	Median	1.0056	0.95332	10.371	2	0	Median	0.95816	0.97719	3.6123	2	0	Median	2462500000	1172800000	1289700000	680070000	337390000	342680000	402970000	187590000	215390000	560500000	258040000	302450000	818950000	389770000	429180000	33424	762	31619	206462;206463;206464;206465;206466;206467;206468;206469;206470;206471;206472;206473;206474	278976;278977;278978;278979;278980;278981;278982;278983;278984;278985;278986;278987;278988;278989;278990;278991;278992;278993;278994;278995;278996;278997;278998;278999;279000;279001;279002;279003;279004;279005;279006;279007;279008	278991			33	
LQHGSTETASPSIK	1	Unmodified	1454.7365	0.73652168	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	14.377	14.414	2;3	2.7222E-05	11289	160511_QHF_FH_JSI12i_3	81.865	53.852			1.2729	1.2968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2729	1.2968	NaN	1	1	Median	116220000	54754000	61469000	0	0	0	0	0	0	7081400	0	7081400	109140000	54754000	54387000	33425	3643	31620	206475;206476;206477	279009;279010;279011	279011			3	
LQHINPLLPACLNK	1	Unmodified	1629.9025	0.90248157	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.181	62.181	3	0.00020988	55266	160511_QHF_FH_JSI11i_3	64.224	53.74			0.83626	0.77577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83626	0.77577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73000000	38183000	34817000	0	0	0	0	0	0	73000000	38183000	34817000	0	0	0	33426	4416	31621	206478	279012;279013	279013			2	
LQHIQAPLSWELVRPHIYGYAVK	1	Unmodified	2717.4806	0.48057575	4785	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			79.464	73.823	5	1.1514E-38	40373	160513_QHF_FH_JSI10Kac_6	173.09	147.69			0.91275	1.0912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91275	1.0912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	686340000	332580000	353760000	0	0	0	686340000	332580000	353760000	0	0	0	0	0	0	33427	4785	31622	206479	279014;279015	279015			2	
LQHLAESWGGK	1	Unmodified	1224.6251	0.62512073	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	4	2	30.261	30.013	2;3	2.3675E-05	25034	160511_QHF_FH_JSI12i_3	80.014	70.826			1.2863	1.2571	94.598	6	1	Median	NaN	NaN	NaN	0	0	Median	6.2488	7.3727	NaN	1	0	Median	1.244	1.1546	103.9	3	1	Median	1.1547	1.1723	21.897	2	0	Median	1219600000	559310000	660290000	0	0	0	95881000	12526000	83355000	476480000	196630000	279850000	647240000	350150000	297090000	33428	3290	31623	206480;206481;206482;206483;206484;206485;206486;206487	279016;279017;279018;279019;279020;279021;279022;279023;279024;279025	279024			10	
LQHLQGSALQK	1	Unmodified	1221.683	0.68296996	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	18.533	18.559	2	0.0044563	14880	160511_QHF_FH_JSI12i_3	56.916	26.749			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33429	450	31624	206488;206489	279026;279027	279026			2	
LQHMQQQVMAQR	0	Unmodified	1496.734	0.73403603	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				20.436	19.198	3	0.00036424	15484	160511_QHF_FH_JSI9i_3	63.944	52.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9787100	0	9787100	9787100	0	9787100	0	0	0	0	0	0	0	0	0	33430	261	31625	206490	279028	279028			1	
LQHMQQQVYAQK	1	Unmodified	1500.7507	0.75073195	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	18.119	18.132	2;3	8.6603E-06	14757	160511_QHF_FH_JSI12i_3	97.431	70.916			1.5259	1.4496	24.321	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9225	1.7216	NaN	1	1	Median	1.2111	1.2205	NaN	1	0	Median	130280000	45237000	85039000	0	0	0	0	0	0	48052000	12400000	35652000	82223000	32837000	49387000	33431	5461	31626	206491;206492;206493	279029;279030;279031	279031			3	
LQHPDMLVTK	1	Unmodified	1180.6274	0.62742892	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	35.098	34.426	2;3	0.007487	29872	160511_QHF_FH_JSI11i_3	42.031	30.437			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33432	4719	31627	206494;206495	279032;279033	279032			2	
LQHPLGVTWDK	1	Unmodified	1292.6877	0.68772099	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	43.955	43.479	2;3	0.00011011	38118	160511_QHF_FH_JSI11i_3	85.533	63.447			1.0243	1.0173	29.052	8	5	Median	NaN	NaN	NaN	0	0	Median	0.5973	0.69486	34.607	2	1	Median	1.0957	1.4769	21.284	3	2	Plateau	0.96089	0.98814	12.75	3	2	Median	1112200000	490680000	621490000	0	0	0	68191000	39066000	29125000	400680000	163630000	237040000	643300000	287980000	355320000	33433	3588	31628	206496;206497;206498;206499;206500;206501;206502;206503	279034;279035;279036;279037;279038;279039;279040;279041;279042;279043;279044	279034			11	
LQHPNVVCLLGVVTK	1	Unmodified	1675.9443	0.94434638	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			83.355	82.091	3	0.00046734	68732	160511_QHF_FH_JSI10i_3	71.344	66.543			0.68296	0.65398	30.68	2	2	Median	0.63412	0.52644	NaN	1	1	Median	0.73557	0.81242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46482000	25388000	21094000	17136000	8835300	8300500	29346000	16553000	12793000	0	0	0	0	0	0	33434	2181	31629	206504;206505	279045;279046	279045			2	
LQHPSAEVR	0	Unmodified	1035.5461	0.54614213	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	11.039	11.128	2	0.0022934	9091	160511_QHF_FH_JSI10i_2	66.073	5.2852			0.85873	0.87145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85873	0.87145	NaN	1	0	Median	34313000	17784000	16529000	0	0	0	0	0	0	0	0	0	34313000	17784000	16529000	33435	3274	31630	206506;206507	279047;279048	279047			1	
LQHQTELENQLEYNK	1	Unmodified	1885.917	0.91700524	4677	Q9H2K8	TAOK3	Serine/threonine-protein kinase TAO3	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	38.124	37.399	3	3.2311E-06	31873	160511_QHF_FH_JSI12i_3	125.28	114.02			1.0416	1.1007	27.479	3	1	Median	0.87583	0.75329	NaN	1	0	Median	1.0416	1.285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1345	1.1007	NaN	1	0	Median	88862000	38133000	50729000	19986000	13807000	6179000	24752000	7076300	17675000	0	0	0	44124000	17250000	26874000	33436	4677	31631	206508;206509;206510	279049;279050	279050			2	
LQHTLQQVLDQR	0	Unmodified	1477.8001	0.80012499	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				45.828	44.218	2;3	0.0010731	36093	160511_QHF_FH_JSI9i_3	56.414	44.059			1.4856	1.2928	NaN	1	1	Median	1.4856	1.2928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5195000	1186100	4008900	5195000	1186100	4008900	0	0	0	0	0	0	0	0	0	33437	117	31632	206511;206512	279051;279052	279052			2	
LQHVEDGVLSMQVASAR	0	Unmodified	1838.9309	0.93088116	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.26	5.56		9	6						4	4	4	5	6	56.426	53.816	2;3	2.5512E-22	46241	160511_QHF_FH_JSI12i_3	211.13	211.13			1.0337	0.97309	16.003	19	4	Median	1.122	0.95703	7.5208	4	1	Median	0.79336	0.97351	19.762	4	0	Median	1.0756	1.0246	8.4704	5	0	Median	0.93617	0.99471	23.914	6	3	Median	3422800000	1721000000	1701800000	377690000	166930000	210760000	527110000	297760000	229350000	1324200000	645880000	678270000	1193800000	610390000	583450000	33438	2252	31633	206513;206514;206515;206516;206517;206518;206519;206520;206521;206522;206523;206524;206525;206526;206527;206528;206529;206530;206531	279053;279054;279055;279056;279057;279058;279059;279060;279061;279062;279063;279064;279065;279066;279067;279068;279069;279070;279071;279072;279073;279074;279075;279076;279077;279078;279079;279080;279081;279082;279083	279079			31	
LQHVEDGVLSMQVASAR	0	Oxidation (M)	1854.9258	0.92579578	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	0	By MS/MS			By MS/MS	11.2	5.79			2					3	1	2			4	47.22	42.037	3	0.00018314	36125	160511_QHF_FH_JSI12i_3	75.548	66.999			0.94202	0.96518	11.095	3	2	Plateau	1.3829	1.1101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95091	0.96518	10.762	2	2	Median	197000000	103360000	93641000	2529000	1052200	1476800	0	0	0	0	0	0	194470000	102310000	92164000	33439	2252	31633	206532;206533;206534;206535;206536;206537	279084;279085;279086;279087;279088;279089	279087		1864	6	
LQHVLVYFFQNEAPK	1	Unmodified	1831.9621	0.96210494	4229	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	80.349	71.852	2;3	1.2353E-17	38652	160513_QHF_FH_JSI9Kac_6	145.43	132.64			0.89802	0.89991	62.49	6	3	Median	0.89853	0.77702	20.041	2	1	Median	0.93579	1.1188	NaN	1	0	Median	1.722	1.61	115.93	2	2	Median	0.86178	0.90453	NaN	1	0	Median	1460900000	727630000	733220000	283330000	132830000	150500000	591500000	355900000	235590000	369300000	128800000	240500000	216720000	110100000	106620000	33440	4229	31634	206538;206539;206540;206541;206542;206543	279090;279091;279092;279093;279094;279095;279096;279097;279098	279093			9	
LQHVSVANLLAQLK	1	Unmodified	1532.9039	0.90386178	5809				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	96.958	96.713	3	0.059697	83665	160511_QHF_FH_JSI12i_3	11.474	4.5923	+		1.0761	1.0669	17.937	5	0	Median	1.4765	1.3079	NaN	1	0	Median	0.88127	1.0677	NaN	1	0	Median	0.82078	0.79175	NaN	1	0	Median	1.0761	1.0669	0	2	0	Median	83403000	30521000	52882000	3553000	1253900	2299100	5468500	3080300	2388200	8448300	4889400	3558900	65933000	21297000	44635000	33441	5809	31635	206544;206545;206546;206547;206548	279099	279099			1	
LQIASDENYK	1	Unmodified	1179.5772	0.57716749	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	33.274	32.807	2	0.00087218	29668	160511_QHF_FH_JSI12i_1	82.287	42.285			0.90492	0.90159	23.354	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91572	0.90159	NaN	1	0	Median	0.7409	0.76549	30.203	2	2	Median	189440000	111200000	78240000	0	0	0	0	0	0	94477000	54470000	40007000	94962000	56730000	38233000	33442	2470	31636	206549;206550;206551	279100;279101;279102;279103	279103			4	
LQIASDENYKDPTNLQGK	2	Unmodified	2033.0065	0.006548526	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		48.213	47.692	3	0.01331	41065	160511_QHF_FH_JSI11i_2	41.86	21.21			1.1527	1.1619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.1619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23979000	10250000	13729000	0	0	0	0	0	0	23979000	10250000	13729000	0	0	0	33443	2470	31637	206552	279104	279104			1	
LQIATLLQMK	1	Unmodified	1157.6842	0.68421552	4040	Q96EA4	SPDL1	Protein Spindly	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	88.584	87.991	2	0.0036249	76380	160511_QHF_FH_JSI12i_3	56.258	25.184			1.0498	0.92849	7.3764	4	0	Linear	1.3681	1.1412	NaN	1	0	Median	0.85116	1.0061	NaN	1	0	Median	1.1443	1.0602	NaN	1	0	Median	0.96319	0.96107	NaN	1	0	Median	86957000	46149000	40808000	13632000	5492500	8139100	15569000	8162200	7407200	14962000	7337800	7623900	42794000	25157000	17637000	33444	4040	31638	206553;206554;206555;206556	279105	279105			1	
LQIDEQLR	0	Unmodified	1013.5506	0.55055881	1725;1726;2248	Q06787;P51114;P51116	FMR1;FXR1;FXR2	Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	42.706	41.739	2	0.0055642	35908	160511_QHF_FH_JSI11i_2	65.252	11.095			1.0014	1.0917	8.4826	4	0	Median	1.3306	1.1453	NaN	1	0	Median	0.98194	1.1854	NaN	1	0	Median	1.0213	1.0407	NaN	1	0	Median	0.89075	0.98624	NaN	1	0	Median	804700000	387500000	417200000	181410000	75323000	106090000	144640000	64255000	80380000	275570000	148080000	127490000	203090000	99840000	103250000	33445	2248;1725;1726	31639	206557;206558;206559;206560	279106;279107;279108;279109;279110	279108			5	
LQIDVDGRK	1	Unmodified	1042.5771	0.57710791	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	3	3	28.312	27.928	2;3	1.6165E-05	23280	160511_QHF_FH_JSI12i_3	103.55	55.698			1.0209	1.0307	14.111	7	0	Median	NaN	NaN	NaN	0	0	Median	0.78907	0.97642	NaN	1	0	Median	1.115	1.0307	18.259	3	0	Plateau	0.95163	0.93838	12.069	3	0	Plateau	2442700000	1331900000	1110800000	0	0	0	180360000	105790000	74574000	1060200000	555960000	504230000	1202100000	670190000	531950000	33446	2282	31640	206561;206562;206563;206564;206565;206566;206567	279111;279112;279113;279114;279115;279116;279117;279118;279119;279120	279118			10	
LQIEDFEAR	0	Unmodified	1119.556	0.55603811	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	56.734	55.551	2	0.0022	47649	160511_QHF_FH_JSI12i_2	66.692	40.308			1.0797	1.0532	5.5556	2	1	Median	1.1792	1.0126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98865	1.0954	NaN	1	1	Median	214420000	104210000	110210000	110850000	53710000	57143000	0	0	0	0	0	0	103570000	50499000	53068000	33447	5180	31641	206568;206569;206570	279121;279122;279123	279122			3	
LQIELGK	1	Unmodified	799.48035	0.48035398	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	2	3	46.393	45.623	2	0.010534	41651	160511_QHF_FH_JSI12i_1	74.415	0			0.93115	0.9757	11.217	10	0	Median	1.059	0.89638	23.175	2	0	Median	0.73597	0.9579	8.5578	3	0	Plateau	0.98143	0.9878	8.1006	2	0	Median	0.96587	1.0801	8.9044	3	0	Plateau	1430000000	705420000	724550000	240680000	110850000	129830000	399790000	210040000	189750000	416110000	207170000	208950000	373400000	177370000	196030000	33448	1180	31642	206571;206572;206573;206574;206575;206576;206577;206578;206579;206580	279124;279125;279126;279127;279128;279129;279130;279131;279132;279133;279134;279135;279136;279137;279138;279139;279140	279130			17	
LQIFFTNVIQALGEHLK	1	Unmodified	1970.0989	0.098932769	1250	P24863	CCNC	Cyclin-C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	97.46	88.035	3	0.00011462	50262	160513_QHF_FH_JSI11Kac_6	137.73	120.65			0.81593	0.82407	36.945	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1026	1.0701	NaN	1	1	Median	0.60378	0.63461	NaN	1	1	Median	139800000	90987000	48813000	0	0	0	0	0	0	68722000	45796000	22926000	71078000	45191000	25887000	33449	1250	31643	206581;206582	279141;279142	279141			2	
LQILELR	0	Unmodified	883.5491	0.54910224	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	34.237	33.373	2	0.016755	28241	160511_QHF_FH_JSI11i_2	63.148	20.081			0.37746	0.41855	53.032	5	5	Median	0.43397	0.37152	NaN	1	1	Median	0.37746	0.46516	NaN	1	1	Median	0.24656	0.24944	NaN	1	1	Median	0.61834	0.66608	65.704	2	2	Median	1288200000	783390000	504770000	257370000	140130000	117240000	278860000	179860000	98997000	308190000	190280000	117900000	443740000	273110000	170630000	33450	4226	31644	206583;206584;206585;206586;206587	279143;279144;279145;279146;279147	279146			5	
LQILHIHTAR	0	Unmodified	1200.7091	0.70912513	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	2	2	5	46.166	36.83	3;4	2.589E-05	19984	160513_QHF_FH_JSI10Kac_6	82.417	72.574			1.1165	1.0358	23.715	13	3	Median	1.0481	0.89852	15.705	4	0	Median	0.9893	1.1695	34.864	2	1	Median	1.1159	1.0924	0.49159	2	0	Median	1.1228	1.2324	24.674	5	2	Median	414610000	177090000	237520000	108730000	49102000	59633000	171850000	65231000	106620000	64978000	30780000	34197000	69046000	31976000	37069000	33451	1586	31645	206588;206589;206590;206591;206592;206593;206594;206595;206596;206597;206598;206599;206600	279148;279149;279150;279151;279152;279153;279154;279155;279156;279157;279158;279159;279160	279159			12	
LQILNLGAK	1	Unmodified	968.60187	0.6018661	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	64.482	63.717	2	0.00017731	55106	160511_QHF_FH_JSI12i_3	86.953	5.3189			0.97894	1.017	12.331	5	1	Median	1.2951	1.0531	NaN	1	0	Median	0.86395	1.017	NaN	1	0	Median	0.87479	0.86366	9.9373	2	1	Median	1.1142	1.0967	NaN	1	0	Median	858870000	466560000	392300000	81644000	34627000	47016000	96287000	53379000	42909000	333970000	192000000	141970000	346960000	186560000	160400000	33452	107	31646	206601;206602;206603;206604;206605	279161;279162;279163;279164;279165;279166;279167;279168	279168			8	
LQILSLR	0	Unmodified	841.53854	0.53853756	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.629	61.804	2	0.0082581	50874	160511_QHF_FH_JSI9i_3	84.244	36.07			0.86202	0.7902	13.176	4	0	Median	0.91239	0.73881	NaN	1	0	Median	0.58289	0.6674	NaN	1	0	Median	0.99887	0.89332	NaN	1	0	Median	0.81444	0.84517	NaN	1	0	Median	233450000	127480000	105970000	85977000	43032000	42945000	59714000	35110000	24605000	47777000	24854000	22923000	39985000	24489000	15496000	33453	2668	31647	206606;206607;206608;206609	279169;279170;279171	279171			3	
LQILTALCHR	0	Unmodified	1223.6809	0.68086147	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.762	60.001	3	0.00027455	32942	160513_QHF_FH_JSI10Kac_6	72.2	56.999			2.5936	3.0534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5936	3.0534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30082000	8572200	21510000	0	0	0	30082000	8572200	21510000	0	0	0	0	0	0	33454	5330	31648	206610	279172	279172			1	
LQIQCVVEDDK	1	Unmodified	1345.6548	0.65476588	1327;1245	P29692;P24534	EEF1D;EEF1B2	Elongation factor 1-delta;Elongation factor 1-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.541	51.872	2	0.0002205	46887	160511_QHF_FH_JSI11i_1	97.472	65.057			0.82349	1.0051	17.974	4	0	Linear	1.2847	1.0574	NaN	1	0	Median	0.82096	0.95537	NaN	1	0	Median	0.90134	0.87665	NaN	1	0	Median	1.2706	1.3293	NaN	1	0	Median	1056400000	505520000	550830000	187840000	80112000	107720000	336580000	163710000	172870000	295300000	149590000	145720000	236630000	112110000	124520000	33455	1327;1245	31649	206611;206612;206613;206614	279173;279174;279175;279176;279177;279178	279173			6	
LQIQVDEK	1	Unmodified	971.52876	0.52876073	4661	Q9H1K1	ISCU	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.786	35.483	2	0.014809	31718	160511_QHF_FH_JSI10i_1	60.478	20.831			0.60251	0.63839	40.683	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4089	0.47879	NaN	1	1	Median	0.88779	0.85117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78993000	46403000	32590000	0	0	0	42167000	25319000	16848000	36826000	21084000	15743000	0	0	0	33456	4661	31650	206615;206616	279179;279180	279180			2	
LQISHEAAACITGLR	0	Unmodified	1638.8512	0.85117428	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8								5	2	3	55.521	55.01	2;3	2.4897E-07	48760	160511_QHF_FH_JSI11i_3	119.92	94.898			0.97769	1.0081	19.95	8	6	Median	NaN	NaN	NaN	0	0	Median	0.99023	1.2266	25.568	3	3	Median	0.88516	0.83152	8.0364	2	1	Median	0.98047	1.0082	8.2961	3	2	Median	1144600000	625450000	519180000	0	0	0	206470000	120190000	86279000	335530000	178340000	157190000	602630000	326920000	275710000	33457	2265	31651	206617;206618;206619;206620;206621;206622;206623;206624;206625;206626	279181;279182;279183;279184;279185;279186;279187;279188;279189;279190;279191;279192	279183			12	
LQISTNLQR	0	Unmodified	1071.6037	0.60365701	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	41.545	40.679	2	0.003304	34752	160511_QHF_FH_JSI12i_3	60.91	9.5645			0.80712	0.87557	18.4	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84809	0.99724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76812	0.76875	NaN	1	0	Median	181890000	91167000	90723000	0	0	0	76895000	40441000	36454000	0	0	0	104990000	50726000	54269000	33458	3896	31652	206627;206628	279193	279193			1	
LQISWHK	1	Unmodified	910.50249	0.5024864	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	39.352	38.553	3	0.0038165	32387	160511_QHF_FH_JSI10i_3	63.48	10.313			1.0162	0.97894	5.9474	4	0	Median	1.2842	1.0447	NaN	1	0	Median	0.78039	0.92014	NaN	1	0	Median	1.0198	0.94462	NaN	1	0	Median	1.0125	1.0145	NaN	1	0	Median	354430000	177930000	176510000	80209000	42790000	37418000	77123000	47963000	29160000	72756000	35294000	37462000	124340000	51878000	72466000	33459	5220	31653	206629;206630;206631;206632	279194;279195;279196;279197	279195			4	
LQIVEMPLAHK	1	Unmodified	1277.7166	0.71657828	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.714	3	8	9							4	6	5	5	62.299	61.492	2;3	1.5715E-07	52542	160511_QHF_FH_JSI12i_3	123.63	80.379			1.0791	1.0355	18.938	19	5	Median	1.225	1.0458	22.567	4	2	Median	0.7663	0.92565	22.038	5	1	Median	1.1355	1.0864	6.9774	5	1	Median	1.0328	1.049	12.441	5	1	Median	12819000000	5750200000	7069300000	1220900000	546010000	674930000	1680500000	882510000	798000000	4007700000	1774000000	2233700000	5910300000	2547700000	3362600000	33460	1706	31654	206633;206634;206635;206636;206637;206638;206639;206640;206641;206642;206643;206644;206645;206646;206647;206648;206649;206650;206651;206652	279198;279199;279200;279201;279202;279203;279204;279205;279206;279207;279208;279209;279210;279211;279212;279213;279214;279215;279216;279217;279218;279219;279220;279221;279222;279223;279224;279225;279226;279227;279228;279229;279230;279231;279232;279233;279234;279235;279236;279237;279238;279239;279240	279237			43	
LQIVEMPLAHK	1	Oxidation (M)	1293.7115	0.7114929	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.09		4	7					4	2	3	3	5	6	48.285	44.035	2;3	0.0001243	37232	160511_QHF_FH_JSI12i_3	90.108	59.544			1.0559	1.1249	29.237	16	8	Median	1.0254	0.88158	46.821	3	0	Median	0.81451	0.96546	15.497	3	2	Median	1.2376	1.1913	19.526	4	4	Median	1.2049	1.289	25.357	6	2	Median	1924400000	853740000	1070600000	103350000	46719000	56628000	165430000	93644000	71788000	524400000	249130000	275280000	1131200000	464250000	666930000	33461	1706	31654	206653;206654;206655;206656;206657;206658;206659;206660;206661;206662;206663;206664;206665;206666;206667;206668;206669	279241;279242;279243;279244;279245;279246;279247;279248;279249;279250;279251;279252;279253;279254;279255;279256;279257	279252		1380	15	
LQIWDTAGQESFR	0	Unmodified	1549.7525	0.75250609	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.62	1	4	2						1	2	1	3	2	70.508	68.903	2	2.5448E-10	59546	160511_QHF_FH_JSI12i_2	147.72	97.675			1.11	1.0578	22.319	8	0	Median	1.5952	1.369	39.032	2	0	Median	0.87218	1.0671	NaN	1	0	Median	1.0075	1.0485	16.412	3	0	Median	1.0656	1.1413	22.735	2	0	Median	2908900000	1377000000	1531900000	386780000	154220000	232560000	578250000	284400000	293850000	1208000000	583070000	624930000	735830000	355310000	380520000	33462	1930	31655	206670;206671;206672;206673;206674;206675;206676;206677	279258;279259;279260;279261;279262;279263;279264;279265;279266;279267;279268;279269;279270;279271;279272;279273;279274	279263			17	
LQKEEEIEFLYNENTVR	1	Unmodified	2153.0641	0.064063405	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	65.135	64.601	3	0.00023	55554	160511_QHF_FH_JSI12i_3	62.203	48.371			0.67878	0.69898	16.544	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70626	0.7015	25.709	2	1	Median	0.6587	0.69898	12.649	2	1	Median	178300000	113300000	64998000	0	0	0	0	0	0	65428000	44665000	20763000	112870000	68635000	44235000	33463	1520	31656	206678;206679;206680;206681	279275;279276;279277	279277			3	
LQKPTDSTASSR	1	Unmodified	1289.6575	0.65754307	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		8.6312	8.6312	2	0.010773	6307	160511_QHF_FH_JSI11i_3	61.65	30.576			0.95973	0.89128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95973	0.89128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38507000	17640000	20867000	0	0	0	0	0	0	38507000	17640000	20867000	0	0	0	33464	5466	31657	206682	279278;279279	279279			2	
LQLANEEIAQVR	0	Unmodified	1382.7518	0.75177781	5714	Q9Y6A5	TACC3	Transforming acidic coiled-coil-containing protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.23	55.724	2	0.008997	48233	160511_QHF_FH_JSI11i_2	58.592	37.722			1.5477	1.5311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5477	1.5311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26583000	11819000	14764000	0	0	0	0	0	0	26583000	11819000	14764000	0	0	0	33465	5714	31658	206683	279280	279280			1	
LQLDNQYAVLENQK	1	Unmodified	1674.8577	0.85769944	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	2	1	1	62.429	61.705	2;3	7.0633E-08	56324	160511_QHF_FH_JSI12i_1	185.59	86.651			0.83582	0.74341	49.739	7	4	Median	0.72947	0.59793	18.503	3	2	Plateau	0.88171	1.0278	7.7315	2	1	Median	1.1267	1.0642	NaN	1	0	Median	0.26571	0.26855	NaN	1	1	Median	1028100000	578790000	449280000	351370000	190820000	160550000	434240000	225740000	208500000	62925000	30409000	32517000	179530000	131830000	47705000	33466	5383	31659	206684;206685;206686;206687;206688;206689;206690	279281;279282;279283;279284;279285;279286;279287;279288	279282			8	
LQLDSPEDAEFIVAK	1	Unmodified	1673.8512	0.85121708	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		81.028	80.426	2	1.3317E-09	71648	160511_QHF_FH_JSI9i_1	142.83	81.477			1.0181	0.90444	7.1034	2	0	Median	1.1688	0.95103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88689	0.86013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	667700000	339380000	328320000	302060000	143130000	158930000	0	0	0	365640000	196250000	169390000	0	0	0	33467	313	31660	206691;206692	279289;279290;279291;279292;279293;279294	279294			6	
LQLEAIHK	1	Unmodified	950.55492	0.5549159	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	2	1	33.471	32.692	3	0.0049316	28416	160511_QHF_FH_JSI11i_3	54.982	42.935			1.1153	1.1859	45.763	6	6	Median	1.0848	0.93789	NaN	1	1	Median	1.1632	1.4353	29.656	2	2	Median	1.9445	1.9365	66.691	2	2	Median	0.88272	0.95887	NaN	1	1	Median	253690000	99567000	154120000	19557000	8918100	10639000	59482000	33119000	26362000	147640000	43894000	103740000	27012000	13636000	13376000	33468	3756	31661	206693;206694;206695;206696;206697;206698	279295;279296;279297;279298;279299;279300	279295			6	
LQLEETDHQK	1	Unmodified	1239.6095	0.60953025	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.394	17.121	3	0.044973	13975	160511_QHF_FH_JSI11i_2	26.707	16.702			1.5175	1.5462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5175	1.5462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79479000	40825000	38653000	0	0	0	0	0	0	79479000	40825000	38653000	0	0	0	33469	2636	31662	206699	279301	279301			1	
LQLEIDQKK	2	Unmodified	1113.6394	0.63937381	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	34.641	34.519	2;3	0.0040935	29320	160511_QHF_FH_JSI12i_3	74.92	29.839			0.52672	0.52978	79.881	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52672	0.52978	79.881	3	3	Median	240860000	130860000	110000000	0	0	0	0	0	0	0	0	0	240860000	130860000	110000000	33470	5497	31663	206700;206701;206702	279302;279303;279304	279304			3	
LQLELSK	1	Unmodified	829.49092	0.49091866	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	2	2	4	46.859	45.125	2	0.0020489	40530	160511_QHF_FH_JSI11i_1	113.7	8.3053			0.95035	0.96099	15.578	11	1	Median	1.0551	0.8727	15.094	3	0	Plateau	0.73275	0.87798	7.6304	2	0	Median	1.0206	1.0129	7.4406	2	0	Median	0.93629	1.0141	22.98	4	1	Median	8510600000	4549700000	3960900000	1546700000	676620000	870080000	2022700000	1152900000	869830000	2457000000	1289700000	1167300000	2484100000	1430500000	1053700000	33471	791	31664	206703;206704;206705;206706;206707;206708;206709;206710;206711;206712;206713	279305;279306;279307;279308;279309;279310;279311;279312;279313;279314;279315;279316;279317;279318;279319;279320;279321;279322;279323;279324;279325;279326	279306			22	
LQLEQQVATGPALDNKK	2	Unmodified	1852.0054	0.005426314	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	48.878	48.254	3	2.3945E-08	41217	160511_QHF_FH_JSI12i_3	133.16	117.65			1.0138	0.99636	11.31	5	0	Median	NaN	NaN	NaN	0	0	Median	0.65242	0.8091	NaN	1	0	Median	1.035	0.99585	0.072895	2	0	Median	0.99518	1.0633	2.5009	2	0	Median	512860000	266910000	245950000	0	0	0	69351000	42371000	26980000	199190000	90224000	108960000	244330000	134320000	110010000	33472	236	31665	206714;206715;206716;206717;206718	279327;279328;279329;279330;279331;279332;279333	279332			6	
LQLETEIEALK	1	Unmodified	1285.7129	0.71293269	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	3	2	2	76.609	75.798	2	6.483E-10	65418	160511_QHF_FH_JSI12i_2	138.25	70.257			0.91749	0.92822	17.772	10	1	Median	0.87863	0.74538	17.737	3	1	Plateau	0.77119	0.89911	26.409	3	0	Median	1.0129	1.0039	18.289	2	0	Median	0.90401	0.9801	3.1859	2	0	Median	4993600000	2533200000	2460400000	721500000	322620000	398880000	1513000000	852510000	660470000	1402700000	701710000	700970000	1356400000	656320000	700080000	33473	842	31666	206719;206720;206721;206722;206723;206724;206725;206726;206727;206728	279334;279335;279336;279337;279338;279339;279340;279341;279342;279343;279344;279345;279346;279347;279348;279349;279350;279351;279352;279353;279354;279355;279356;279357;279358;279359;279360	279337			27	
LQLETEIEALKEELLFMK	2	Unmodified	2176.1701	0.17010838	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		5	2						4	2	2	4	3	100.63	97.522	2;3	4.4574E-52	90026	160511_QHF_FH_JSI11i_2	240.2	194.41			1.076	1.0065	41.161	11	3	Median	1.1239	0.96376	43.428	2	1	Median	0.89139	1.0723	26.083	2	0	Median	0.89383	0.88363	51.932	4	0	Median	1.2844	1.451	47.8	3	2	Median	3096200000	1434000000	1662200000	359210000	186780000	172430000	813790000	397950000	415840000	1140700000	595160000	545530000	782480000	254080000	528400000	33474	842	31667	206729;206730;206731;206732;206733;206734;206735;206736;206737;206738;206739	279361;279362;279363;279364;279365;279366;279367;279368;279369;279370;279371;279372;279373;279374;279375;279376	279369			16	
LQLETEIEALKEELLFMK	2	Oxidation (M)	2192.165	0.165023	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	1	1				By MS/MS	16	0									1				1	96.62	87.178	3	6.9703E-08	47563	160513_QHF_FH_JSI12Kac_6	111.66	78.351			1.1243	1.1897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1243	1.1897	NaN	1	0	Median	285250000	112790000	172460000	0	0	0	0	0	0	0	0	0	285250000	112790000	172460000	33475	842	31667	206740	279377;279378	279378		358	2	
LQLHESQK	1	Unmodified	981.52434	0.52434406	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							3	2	6	4	10.286	9.9971	2;3	0.0011225	7604	160511_QHF_FH_JSI11i_3	74.464	51.724			0.97912	1.1023	32.511	15	7	Median	0.84951	0.73243	61.939	3	3	Median	1.0997	1.3746	17.248	2	0	Median	0.91304	0.90843	29.432	6	4	Median	1.0905	1.1182	5.0085	4	0	Median	3792000000	1934100000	1858000000	227870000	105760000	122110000	419920000	206680000	213240000	1707000000	902970000	803990000	1437300000	718640000	718630000	33476	2522	31668	206741;206742;206743;206744;206745;206746;206747;206748;206749;206750;206751;206752;206753;206754;206755	279379;279380;279381;279382;279383;279384;279385;279386;279387;279388;279389;279390;279391;279392;279393;279394;279395;279396;279397;279398;279399	279382			21	
LQLHQGMFPQAMK	1	Unmodified	1527.769	0.76902455	4763	Q9H7B4	SMYD3	Histone-lysine N-methyltransferase SMYD3	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	55.616	55.495	3	1.7937E-06	47697	160511_QHF_FH_JSI12i_3	125.28	119.56			0.85678	0.84407	4.005	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92744	0.86831	NaN	1	0	Median	0.7915	0.8205	NaN	1	0	Median	194160000	104460000	89700000	0	0	0	0	0	0	77053000	42058000	34996000	117100000	62400000	54704000	33477	4763	31669	206756;206757	279400	279400			1	
LQLIKDYR	1	Acetyl (K)	1089.6182	0.61824444	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		67.144	56.24	2	0.012257	30476	160513_QHF_FH_JSI11Kac_5	71.501	29.392			0.28339	0.28162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28339	0.28162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16142000	12823000	3318400	0	0	0	0	0	0	16142000	12823000	3318400	0	0	0	33478	1288	31670	206758	279401	279401	1213		1	
LQLIPGVCGFR	0	Unmodified	1258.6856	0.6856125	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	82.149	81.452	2	1.4505E-07	72762	160511_QHF_FH_JSI11i_3	123.92	51.432			0.82433	0.96914	23.063	5	0	Median	1.1715	0.96914	NaN	1	0	Median	0.70053	0.84038	21.003	2	0	Median	0.79956	0.73716	NaN	1	0	Median	1.2705	1.2635	NaN	1	0	Median	546980000	274310000	272670000	75395000	43927000	31469000	180180000	111840000	68346000	136500000	64878000	71621000	154900000	53666000	101240000	33479	2757	31671	206759;206760;206761;206762;206763	279402;279403;279404;279405;279406;279407;279408;279409;279410	279403			9	
LQLLEDDK	1	Unmodified	972.51278	0.51277632	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.25	5.63	3						1			1	2		1	46.337	43.132	2	0.00063795	38534	160511_QHF_FH_JSI9i_1	101.64	55.926			0.82915	0.82793	33.678	4	1	Median	0.90313	0.74514	NaN	1	0	Median	0.5666	0.6754	43.695	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0176	1.0798	NaN	1	0	Median	1659100000	819210000	839850000	368680000	197590000	171100000	655730000	355360000	300370000	0	0	0	634650000	266260000	368390000	33480	939	31672	206764;206765;206766;206767	279411;279412;279413;279414;279415	279415			5	
LQLLEEENK	1	Unmodified	1114.587	0.58700389	4613	Q9GZY8	MFF	Mitochondrial fission factor	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	43.933	43.124	2	0.0038717	37055	160511_QHF_FH_JSI11i_2	58.433	40.171			0.63554	0.77682	36.588	6	0	Median	0.61007	0.51754	NaN	1	0	Median	0.63554	0.77682	4.3756	2	0	Median	0.64233	0.65004	47.259	2	0	Median	1.145	1.2537	NaN	1	0	Median	261360000	154610000	106750000	29399000	17605000	11794000	86594000	49451000	37143000	118110000	73625000	44482000	27261000	13930000	13331000	33481	4613	31673	206768;206769;206770;206771;206772;206773	279416;279417;279418	279418			2	
LQLLEPFDK	1	Unmodified	1101.607	0.60701105	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.95	3	5	2					4		3	3	4	4	78.135	74.516	2	5.6123E-07	65921	160511_QHF_FH_JSI12i_2	138.1	102.22			0.86211	0.89743	22.13	13	4	Median	1.002	0.84152	24.567	2	0	Median	0.76844	0.89743	21.725	3	2	Median	0.93054	0.92057	26.443	4	1	Median	0.81024	0.87743	22.584	4	1	Median	1289700000	730160000	559560000	158430000	71677000	86758000	453550000	289350000	164200000	428510000	231420000	197080000	249230000	137710000	111520000	33482	4315	31674	206774;206775;206776;206777;206778;206779;206780;206781;206782;206783;206784;206785;206786;206787	279419;279420;279421;279422;279423;279424;279425;279426;279427;279428;279429;279430;279431;279432;279433;279434;279435;279436;279437	279422			19	
LQLLEPFDKWDGK	2	Unmodified	1587.8297	0.82969378	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.2	0.4		4	1							2	2		1	86.064	85.584	3	6.5022E-05	73597	160511_QHF_FH_JSI12i_3	83.729	68.567			1.3378	1.1662	42.643	5	0	Median	1.4235	1.2336	7.9441	2	0	Median	0.65484	0.79686	11.552	2	0	Median	NaN	NaN	NaN	0	0	Median	2.2124	2.2147	NaN	1	0	Median	158530000	64618000	93915000	17280000	9557600	7722200	16786000	10349000	6436400	0	0	0	124470000	44711000	79757000	33483	4315	31675	206788;206789;206790;206791;206792	279438;279439;279440;279441	279440			4	
LQLLLLHTR	0	Unmodified	1105.6972	0.69716346	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			73.265	65.053	3	0.00086194	35790	160513_QHF_FH_JSI10Kac_6	67.726	33.765			1.1323	0.97907	20.178	3	2	Median	1.2715	1.0884	14.976	2	2	Median	0.67287	0.80836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193150000	103590000	89560000	69376000	28839000	40537000	123770000	74752000	49023000	0	0	0	0	0	0	33484	1599	31676	206793;206794;206795	279442;279443;279444;279445	279444			4	
LQLLLLNPLK	1	Unmodified	1163.7642	0.7641804	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				90.858	82.143	2	0.0029744	45897	160513_QHF_FH_JSI9Kac_6	78.192	58.921			1.0578	0.90586	NaN	1	1	Median	1.0578	0.90586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55479000	24027000	31452000	55479000	24027000	31452000	0	0	0	0	0	0	0	0	0	33485	3262	31677	206796	279446	279446			1	
LQLLQEDYNR	0	Unmodified	1290.6568	0.65681479	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				86.152	84.928	2	0.00016395	69610	160511_QHF_FH_JSI9i_3	83.005	27.456			1.5372	1.2568	NaN	1	0	Median	1.5372	1.2568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27291000	9863000	17428000	27291000	9863000	17428000	0	0	0	0	0	0	0	0	0	33486	5164	31678	206797	279447	279447			1	
LQLLSLVTK	1	Unmodified	1013.6485	0.64848194	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	83.686	82.982	2	7.9941E-05	73873	160511_QHF_FH_JSI11i_3	95.502	61.249			0.96814	0.94399	11.894	8	0	Median	1.1184	0.91975	6.6997	2	0	Median	0.68025	0.81801	17.236	2	0	Median	0.97079	0.94698	7.8657	2	0	Median	0.96814	1.0396	0.39478	2	0	Median	983130000	489450000	493680000	198960000	104170000	94781000	208320000	123400000	84919000	239750000	113150000	126600000	336110000	148730000	187380000	33487	417	31679	206798;206799;206800;206801;206802;206803;206804;206805	279448;279449;279450;279451;279452;279453;279454	279448			7	
LQLLSNLFHGMDK	1	Oxidation (M)	1530.7864	0.78644876	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	77.998	77.243	2;3	0.00042827	64997	160511_QHF_FH_JSI10i_3	74.962	58.998			0.68594	0.71406	17.463	4	1	Median	NaN	NaN	NaN	0	0	Median	0.68594	0.79344	22.097	2	0	Median	0.80061	0.7513	NaN	1	0	Median	0.53249	0.61727	NaN	1	1	Median	436770000	251900000	184870000	0	0	0	230970000	120600000	110360000	133570000	83675000	49898000	72230000	47620000	24611000	33488	3222	31680	206806;206807;206808;206809;206810	279455;279456;279457;279458;279459	279456		2227	5	
LQLLSNLFHGMDK	1	Unmodified	1514.7915	0.79153413	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			12						3	4	2	3	6	88.703	86.235	2;3	9.3448E-16	73575	160511_QHF_FH_JSI9i_3	127.42	89.337			0.97548	0.90949	49.184	13	4	Median	0.85375	0.68761	15.928	3	0	Plateau	0.59903	0.69727	11.204	2	0	Median	0.99093	0.95173	2.9997	3	0	Median	1.0828	1.0836	82.474	5	4	Median	2569800000	1328000000	1241800000	560210000	272450000	287760000	546230000	263390000	282830000	652230000	319850000	332380000	811170000	472310000	338860000	33489	3222	31680	206811;206812;206813;206814;206815;206816;206817;206818;206819;206820;206821;206822;206823;206824;206825	279460;279461;279462;279463;279464;279465;279466;279467;279468;279469;279470;279471;279472;279473;279474;279475;279476;279477;279478;279479;279480;279481;279482;279483;279484;279485;279486;279487;279488;279489;279490;279491;279492;279493;279494;279495	279490			36	
LQLLTGEHRPEDEEELEK	1	Unmodified	2164.0648	0.064791686	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	1			By MS/MS		3	0			4									4		47.76	47.76	3;4	0.00021954	42153	160511_QHF_FH_JSI11i_3	67.274	52.02			0.99581	0.94166	20.747	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99581	0.94166	20.747	4	4	Median	NaN	NaN	NaN	0	0	Median	144640000	74734000	69903000	0	0	0	0	0	0	144640000	74734000	69903000	0	0	0	33490	2429	31681	206826;206827;206828;206829	279496;279497;279498;279499	279497			4	
LQLNGNLQLELAQVLAQERPK	1	Unmodified	2374.3332	0.33324281	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			4.67	5.09		3	2						1	2	4			99.444	98.396	3	1.097E-57	83622	160511_QHF_FH_JSI10i_3	219.65	206.98			1.086	1.2282	23.359	5	1	Median	1.1195	0.90097	NaN	1	0	Median	1.0425	1.256	21.71	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1200600000	574580000	625990000	390200000	171170000	219020000	810370000	403410000	406970000	0	0	0	0	0	0	33491	1650	31682	206830;206831;206832;206833;206834;206835	279500;279501;279502;279503;279504;279505;279506	279500			7	
LQLNIVEMK	1	Unmodified	1086.6107	0.61071622	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.697	69.097	2	0.014829	60381	160511_QHF_FH_JSI11i_2	55.064	27.81			0.71995	0.71486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71995	0.71486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56347000	36054000	20294000	0	0	0	0	0	0	56347000	36054000	20294000	0	0	0	33492	603	31683	206836	279507	279507			1	
LQLNIVEMKDENATLDGGDVLFTGR	1	Unmodified	2747.38	0.37999459	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	98.59	98.6	3	8.6324E-05	85405	160511_QHF_FH_JSI12i_3	50.531	31.153			1.0625	1.0596	4.594	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.0946	NaN	1	0	Median	0.98839	1.0258	NaN	1	0	Median	41033000	20273000	20760000	0	0	0	0	0	0	18796000	7846100	10950000	22237000	12427000	9810300	33493	603	31684	206837;206838	279508;279509	279509			2	
LQLNYLGNYIPR	0	Unmodified	1462.7932	0.79324869	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	4	1	4	1	86.891	84.559	2	1.3219E-10	71117	160511_QHF_FH_JSI9i_3	141.88	127.67			0.97785	1.0115	60.946	10	7	Median	1.099	0.90433	95.54	4	3	Median	0.86008	0.99083	NaN	1	1	Median	1.0674	1.0446	40.881	4	3	Median	0.96402	1.0527	NaN	1	0	Median	533150000	270470000	262680000	171800000	90771000	81033000	52404000	28512000	23892000	290420000	140910000	149510000	18524000	10276000	8247800	33494	2194	31685	206839;206840;206841;206842;206843;206844;206845;206846;206847;206848	279510;279511;279512;279513;279514;279515;279516;279517;279518;279519;279520;279521;279522	279516			13	
LQLPNMK	1	Unmodified	842.46841	0.46840908	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.8	3	1	1								1	2	2	47.454	46.875	2	0.031087	40058	160511_QHF_FH_JSI12i_2	55.441	29.332			0.78802	0.87147	14.683	5	0	Median	NaN	NaN	NaN	0	0	Median	0.69498	0.82322	NaN	1	0	Median	1.1079	1.051	9.2504	2	0	Median	0.75778	0.8238	7.9551	2	0	Median	385460000	184490000	200970000	0	0	0	45609000	24606000	21003000	190890000	83059000	107830000	148960000	76828000	72137000	33495	3965	31686	206849;206850;206851;206852;206853	279523;279524;279525;279526	279525			4	
LQLPVWEYK	1	Unmodified	1174.6386	0.63864553	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.458	78.651	2	0.00072539	69062	160511_QHF_FH_JSI11i_2	83.005	50.784			0.92841	0.97473	33.552	4	0	Median	1.557	1.346	NaN	1	0	Median	0.55704	0.68185	NaN	1	0	Median	0.78915	0.77413	NaN	1	0	Median	1.0922	1.2273	NaN	1	0	Median	145150000	76044000	69110000	28544000	13766000	14778000	31869000	21569000	10300000	55391000	30018000	25372000	29350000	10691000	18660000	33496	300	31687	206854;206855;206856;206857	279527;279528;279529;279530;279531	279530			5	
LQLQYTLQELVSK	1	Unmodified	1561.8716	0.87155859	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	96.501	96.517	2	0.00055149	83559	160511_QHF_FH_JSI12i_3	88.441	41.18			1.4045	1.5083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4045	1.5083	NaN	1	1	Median	20244000	8858600	11385000	0	0	0	0	0	0	0	0	0	20244000	8858600	11385000	33497	3811	31688	206858	279532	279532			1	
LQLSGHAMPR	0	Unmodified	1108.5811	0.58114743	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			29.699	28.337	3	0.00039812	23082	160511_QHF_FH_JSI9i_3	64.374	53.449			0.80319	0.77561	32.132	2	0	Median	1.1962	0.97346	NaN	1	0	Median	0.53932	0.61797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128620000	69206000	59418000	81451000	40207000	41245000	47172000	28999000	18173000	0	0	0	0	0	0	33498	2446	31689	206859;206860	279533	279533			1	
LQLSPWESSVVNR	0	Unmodified	1513.7889	0.7888916	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	70.921	70.254	2	0.00011116	60801	160511_QHF_FH_JSI12i_3	90.653	30.09			1.0878	1.0634	21.242	6	0	Median	1.2538	1.0902	NaN	1	0	Median	0.97025	1.1584	26.978	2	0	Median	0.90457	0.87459	25.785	2	0	Median	1.0591	1.0775	NaN	1	0	Median	229710000	114320000	115390000	31931000	14030000	17901000	47171000	24007000	23164000	87283000	47103000	40180000	63320000	29176000	34144000	33499	2521	31690	206861;206862;206863;206864;206865;206866;206867	279534;279535;279536;279537;279538;279539;279540;279541;279542	279542			9	
LQLSVYTTTR	0	Unmodified	1180.6452	0.64518747	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	1	2	2	2	57.853	50.991	2	4.4317E-05	26560	160513_QHF_FH_JSI12Kac_6	103.26	69.993			1.2992	1.3588	11.727	7	1	Median	1.5848	1.3968	NaN	1	0	Median	1.1283	1.3416	19.24	2	0	Median	1.4005	1.3154	10.707	2	0	Median	1.1791	1.2282	14.296	2	1	Median	445630000	204510000	241120000	28596000	10921000	17674000	100980000	51285000	49694000	152760000	72085000	80673000	163300000	70218000	93083000	33500	4153	31691	206868;206869;206870;206871;206872;206873;206874	279543;279544;279545;279546;279547;279548;279549;279550;279551;279552;279553	279551			11	
LQLTDLLIK	1	Unmodified	1055.659	0.65904662	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	93.311	92.784	2	0.021148	80077	160511_QHF_FH_JSI12i_2	42.109	17.186			0.82339	0.67332	22.068	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82339	0.98538	NaN	1	0	Median	0.69169	0.67207	NaN	1	0	Median	0.92944	0.98451	NaN	1	0	Median	24081000	12502000	11579000	0	0	0	7325100	4217700	3107500	9264100	5311700	3952400	7491400	2972200	4519200	33501	591	31692	206875;206876;206877	279554;279555;279556	279555			3	
LQLTLYQYK	1	Unmodified	1168.6492	0.64921022	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29		4	1					5	5	3	4	4	4	71.553	65.358	2	0.00021215	35185	160513_QHF_FH_JSI11Kac_6	93.162	59.366			1.0316	1.0998	12.017	13	3	Median	1.5309	1.3052	9.777	3	0	Plateau	0.87586	1.0148	16.353	3	0	Median	1.0496	1.0698	11.312	3	1	Median	1.0062	1.0883	8.2431	4	2	Median	894160000	416610000	477550000	154220000	58694000	95529000	261550000	149020000	112530000	242970000	101640000	141330000	235410000	107260000	128160000	33502	4773	31693	206878;206879;206880;206881;206882;206883;206884;206885;206886;206887;206888;206889;206890;206891;206892	279557;279558;279559;279560;279561;279562;279563;279564;279565;279566;279567;279568;279569;279570;279571;279572;279573	279560			17	
LQLTNMIIEGGHFTLGAQK	1	Unmodified	2070.0932	0.093195464	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		91.677	91.677	3	0.0051942	81795	160511_QHF_FH_JSI11i_3	43.955	34.394			2.5941	2.4054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5941	2.4054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13313000	3380100	9933000	0	0	0	0	0	0	13313000	3380100	9933000	0	0	0	33503	3359	31694	206893	279574	279574			1	
LQLVGTAAMLLASK	1	Unmodified	1414.8218	0.82177163	1171	P20248;P78396	CCNA2;CCNA1	Cyclin-A2;Cyclin-A1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	3	3	2	96.998	96.802	2;3	0.00035303	83699	160511_QHF_FH_JSI12i_3	78.342	58.58			1.0597	1.0177	23.813	7	3	Median	1.2067	1.0177	NaN	1	0	Median	0.75524	0.85247	42.355	2	1	Median	1.1238	1.0669	11.674	2	1	Median	1.0425	1.1131	25.464	2	1	Median	67235000	29282000	37954000	12002000	4983900	7018500	14123000	5768100	8354700	16655000	7737800	8917500	24455000	10792000	13663000	33504	1171	31695	206894;206895;206896;206897;206898;206899;206900;206901;206902	279575;279576;279577;279578;279579;279580;279581;279582	279581			8	
LQLVVENSAQR	0	Unmodified	1255.6884	0.68844927	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.325	41.851	2	0.0027108	35962	160511_QHF_FH_JSI11i_2	71.349	14.62			0.82323	0.81747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82323	0.81747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33423000	20257000	13165000	0	0	0	0	0	0	33423000	20257000	13165000	0	0	0	33505	450	31696	206903	279583	279583			1	
LQLVVLR	0	Unmodified	839.55927	0.559273	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.38			4					1	3	2	2	2	2	67.706	62.643	2	0.006833	53853	160511_QHF_FH_JSI12i_3	89.673	34.232			0.95543	0.98411	12.245	8	0	Median	1.3868	1.1518	8.8835	2	0	Median	0.87426	0.99282	8.2442	2	0	Median	0.96738	0.9263	10.568	2	0	Median	0.87963	0.90702	9.531	2	0	Median	321180000	162370000	158810000	34221000	14944000	19277000	85166000	45284000	39882000	105300000	49453000	55850000	96489000	52688000	43801000	33506	5268	31697	206904;206905;206906;206907;206908;206909;206910;206911	279584;279585;279586;279587;279588;279589	279586			6	
LQLWAFK	1	Unmodified	904.51707	0.51707383	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	78.918	74.405	2	0.0093343	66603	160511_QHF_FH_JSI12i_3	83.801	26.242			1.0202	1.0941	10.034	8	0	Median	1.4367	1.2051	9.0167	2	0	Median	0.87037	1.029	8.1895	2	0	Median	1.0088	0.96525	1.7803	2	0	Median	1.0501	1.1095	1.4912	2	0	Median	200880000	97751000	103120000	36051000	16868000	19183000	46581000	23961000	22621000	53089000	25797000	27291000	65155000	31125000	34030000	33507	5696	31698	206912;206913;206914;206915;206916;206917;206918;206919	279590;279591;279592;279593;279594	279592			5	
LQLWDIAGQER	0	Unmodified	1327.6884	0.68844927	2462	Q13637	RAB32	Ras-related protein Rab-32	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	75.757	75.145	2	4.164E-05	66764	160511_QHF_FH_JSI10i_2	96.89	84.664			1.2242	1.2024	20.444	6	3	Median	1.6102	1.3673	NaN	1	1	Median	0.76598	0.94344	NaN	1	0	Median	1.4341	1.3445	12.311	2	0	Median	0.97043	1.0123	20.859	2	2	Median	236240000	106670000	129560000	23399000	7735600	15663000	46268000	27758000	18510000	90121000	34784000	55337000	76450000	36398000	40052000	33508	2462	31699	206920;206921;206922;206923;206924;206925	279595;279596;279597;279598;279599;279600	279599			6	
LQLWDTAGQER	0	Unmodified	1315.6521	0.65206377	1175	P20340;Q9NRW1;Q14964	RAB6A;RAB6B;RAB39A	Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.33	5	4	4				2	5	1	6	6	4	5	56.951	52.247	2	4.3583E-14	46443	160511_QHF_FH_JSI11i_3	175.73	0			0.91289	0.9878	13.01	20	5	Median	1.2342	1.0557	8.1682	5	0	Median	0.81115	0.95573	13.771	6	3	Median	1.055	1.0498	14.299	4	0	Median	0.867	0.9369	10.212	5	2	Median	12182000000	6028800000	6153700000	1601200000	722140000	879100000	3313200000	1752600000	1560600000	3851500000	1934900000	1916600000	3416500000	1619100000	1797400000	33509	1175	31700	206926;206927;206928;206929;206930;206931;206932;206933;206934;206935;206936;206937;206938;206939;206940;206941;206942;206943;206944;206945;206946	279601;279602;279603;279604;279605;279606;279607;279608;279609;279610;279611;279612;279613;279614;279615;279616;279617;279618;279619;279620;279621;279622;279623;279624;279625;279626;279627;279628;279629;279630;279631;279632;279633;279634;279635;279636;279637	279602			37	
LQMASPEEK	1	Unmodified	1031.4957	0.49574604	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	23.224	22.892	2	0.0049632	20167	160511_QHF_FH_JSI12i_1	65.305	32.835			1.2351	1.2424	69.461	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77095	0.76023	NaN	1	0	Median	1.9787	2.0303	NaN	1	1	Median	199420000	85559000	113860000	0	0	0	0	0	0	101270000	57520000	43748000	98148000	28039000	70110000	33510	2909	31701	206947;206948	279638;279639	279639			2	
LQMEAPHIIVGTPGR	0	Oxidation (M)	1633.861	0.86101068	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.69		1	12					2	3	6	5	3	4	50.322	46.857	2;3	2.7361E-05	37443	160511_QHF_FH_JSI10i_3	105.39	96.339			0.95003	0.9576	18.037	18	6	Median	1.2602	1.0427	12.058	6	2	Median	0.91247	1.0521	14.915	5	2	Median	0.96096	0.8821	13.383	3	0	Median	0.68305	0.66247	23.779	4	2	Linear	1720500000	819420000	901120000	513970000	213090000	300880000	680100000	358330000	321770000	440000000	202290000	237710000	86470000	45717000	40753000	33511	1917	31702	206949;206950;206951;206952;206953;206954;206955;206956;206957;206958;206959;206960;206961;206962;206963;206964;206965;206966	279640;279641;279642;279643;279644;279645;279646;279647;279648;279649;279650;279651;279652;279653;279654;279655;279656;279657;279658;279659;279660	279644		1586	20	
LQMEAPHIIVGTPGR	0	Unmodified	1617.8661	0.86609606	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	1	7	8					1	4	6	6	5	4	64.823	62.019	2;3	3.3057E-21	51926	160511_QHF_FH_JSI10i_3	171.29	135.78			1.0747	1.086	17.596	21	6	Median	1.3258	1.1204	8.7931	6	0	Median	0.91008	1.0484	27.065	6	1	Median	1.0747	1.1055	12.933	5	3	Median	1.0195	1.0683	19.637	4	2	Median	24753000000	12510000000	12244000000	4697500000	1848300000	2849200000	8339700000	4475500000	3864200000	8043900000	4112700000	3931200000	3672200000	2073100000	1599200000	33512	1917	31702	206967;206968;206969;206970;206971;206972;206973;206974;206975;206976;206977;206978;206979;206980;206981;206982;206983;206984;206985;206986;206987	279661;279662;279663;279664;279665;279666;279667;279668;279669;279670;279671;279672;279673;279674;279675;279676;279677;279678;279679;279680;279681;279682;279683;279684;279685;279686;279687;279688;279689;279690	279666			26	
LQMEGVSVGQR	0	Unmodified	1202.6078	0.60775611	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.045	41.664	2	2.3313E-05	35669	160511_QHF_FH_JSI12i_2	105.52	67.962			1.4608	1.5628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4608	1.5628	NaN	1	1	Median	82357000	30414000	51943000	0	0	0	0	0	0	0	0	0	82357000	30414000	51943000	33513	2918	31703	206988	279691	279691			1	
LQMEQQQQLQQR	0	Unmodified	1556.7729	0.77292396	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.66		6					3			2	2	3	2	32.013	27.853	2;3	5.3031E-16	24226	160511_QHF_FH_JSI9i_2	162.36	124.89			0.99018	1.0151	15.07	8	2	Median	1.185	1.0024	19.355	2	0	Median	0.85657	1.0074	15.011	2	0	Median	1.0084	1.0151	12.109	2	1	Median	0.9033	0.97499	28.716	2	1	Median	401650000	202000000	199650000	146180000	61412000	84770000	94131000	53958000	40173000	101140000	52248000	48893000	60198000	34386000	25812000	33514	4978	31704	206989;206990;206991;206992;206993;206994;206995;206996;206997	279692;279693;279694;279695;279696;279697;279698;279699;279700;279701;279702;279703	279697			12	
LQMEQQQQLQQR	0	Oxidation (M)	1572.7678	0.76783858	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				29.583	28.309	2	6.3883E-05	24682	160511_QHF_FH_JSI9i_1	128.03	98.368			1.3371	1.0875	NaN	1	1	Median	1.3371	1.0875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81568000	38642000	42925000	81568000	38642000	42925000	0	0	0	0	0	0	0	0	0	33515	4978	31704	206998	279704	279704		2566	1	
LQMPFQSGEFK	1	Unmodified	1310.6329	0.63290823	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	71.105	70.209	2	0.0014832	60481	160511_QHF_FH_JSI12i_2	63.283	35.541			0.87844	1.0831	9.6191	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87844	1.0831	NaN	1	0	Median	1.1456	1.1485	NaN	1	0	Median	0.84538	0.95169	NaN	1	0	Median	171690000	87987000	83704000	0	0	0	48739000	24827000	23912000	72845000	36612000	36232000	50107000	26548000	23559000	33516	128	31705	206999;207000;207001	279705;279706;279707;279708;279709;279710	279705			6	
LQMPSFK	1	Unmodified	849.44186	0.44185998	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	54.787	53.903	2	0.0094456	46064	160511_QHF_FH_JSI12i_3	79.116	53.007			0.99375	0.99052	5.8493	6	1	Median	1.2076	1.0096	7.1915	2	0	Median	0.86219	1.0217	7.6019	2	0	Median	1.0598	1.0133	NaN	1	1	Median	0.91297	0.9325	NaN	1	0	Median	663280000	313700000	349570000	94034000	37440000	56594000	135850000	66968000	68882000	181660000	91968000	89691000	251740000	117330000	134410000	33517	3405	31706	207002;207003;207004;207005;207006;207007	279711;279712;279713;279714;279715;279716	279716			6	
LQMPSFKMPKVDR	2	2 Oxidation (M)	1607.8164	0.81636868	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	2	2		By MS/MS		By MS/MS	3	0			2								1		1	101.9	101.83	2	0.030978	84410	160511_QHF_FH_JSI10i_3	46.158	19.485			0.77008	0.83933	41.311	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99044	1.1241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59874	0.62671	NaN	1	0	Median	693250000	439530000	253720000	0	0	0	162360000	69780000	92578000	0	0	0	530890000	369750000	161140000	33518	3405	31707	207008;207009	279717;279718	279717			2	
LQMTIENMNHLK	1	Unmodified	1470.7323	0.7323047	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	53.797	53.116	3	7.841E-13	45404	160511_QHF_FH_JSI12i_3	129.34	116.21			1.325	1.7349	16.713	6	0	Linear	1.3642	1.1533	NaN	1	0	Median	1.0959	1.34	NaN	1	0	Median	1.3932	1.3629	7.6552	2	0	Median	1.41	1.4853	30.147	2	0	Median	797490000	321830000	475650000	75979000	24747000	51232000	136810000	66063000	70746000	271570000	103420000	168150000	313130000	127600000	185530000	33519	4416	31708	207010;207011;207012;207013;207014;207015	279719;279720;279721;279722;279723;279724;279725;279726	279725			8	
LQMWVDVFPK	1	Unmodified	1261.6529	0.65291539	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.509	94.112	2	0.0030949	83508	160511_QHF_FH_JSI10i_2	70.919	29.89			1.0144	1.0847	18.969	4	4	Median	0.92003	0.79282	NaN	1	1	Median	1.0061	1.2251	NaN	1	1	Median	1.0229	1.0369	NaN	1	1	Median	1.0339	1.1348	NaN	1	1	Median	90801000	47962000	42839000	11212000	6480900	4731000	23279000	13754000	9524600	34292000	17427000	16865000	22018000	10299000	11719000	33520	5161	31709	207016;207017;207018;207019	279727;279728;279729;279730	279730			4	
LQNAADMPANMDK	1	Unmodified	1417.633	0.63298458	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.836	34.231	2	4.8075E-11	30660	160511_QHF_FH_JSI11i_1	153.95	137.28			0.92678	0.94212	14.921	4	0	Median	1.4085	1.1623	NaN	1	0	Median	0.69277	0.80825	NaN	1	0	Median	0.97679	0.94379	NaN	1	0	Median	0.87932	0.94046	NaN	1	0	Median	503410000	277730000	225680000	112640000	59279000	53357000	136490000	80200000	56291000	147580000	81471000	66112000	106700000	56777000	49921000	33521	1690	31710	207020;207021;207022;207023	279731;279732;279733;279734;279735;279736;279737;279738	279732			8	
LQNAFWEHGASR	0	Unmodified	1414.6742	0.67419619	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		38.918	37.917	3	0.00054101	31060	160511_QHF_FH_JSI9i_3	48.704	46.157			0.82727	0.95617	18.975	3	0	Median	1.2657	1.0339	NaN	1	0	Median	0.82727	0.95617	NaN	1	0	Median	0.77522	0.72083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	140360000	65061000	75299000	42990000	16302000	26688000	65874000	35261000	30613000	31496000	13498000	17998000	0	0	0	33522	3760	31711	207024;207025;207026	279739;279740	279740			2	
LQNALNEQR	0	Unmodified	1084.5625	0.56252048	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.337	15.422	2	0.038981	12454	160511_QHF_FH_JSI12i_2	46.426	10.24			1.9198	2.0818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9198	2.0818	NaN	1	1	Median	24819000	8880300	15939000	0	0	0	0	0	0	0	0	0	24819000	8880300	15939000	33523	2587	31712	207027	279741	279741			1	
LQNATPTNFK	1	Unmodified	1132.5877	0.58767259	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	26.796	26.213	2	0.0065459	23489	160511_QHF_FH_JSI12i_1	52.591	28.798			1.1751	1.3239	12.515	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0925	1.2978	NaN	1	1	Median	1.6285	1.5609	NaN	1	0	Median	1.1751	1.2476	11.215	2	0	Median	162240000	68980000	93263000	0	0	0	55407000	30070000	25338000	48588000	13625000	34964000	58247000	25285000	32962000	33524	5106	31713	207028;207029;207030;207031	279742;279743;279744;279745	279744			4	
LQNDPQLEAEYQQLQEDHQR	0	Unmodified	2481.152	0.15204356	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	56.542	55.611	3	4.654E-06	48068	160511_QHF_FH_JSI11i_2	78.708	72.64			0.94522	0.99356	5.9796	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96001	0.95242	NaN	1	0	Median	0.93066	1.0365	NaN	1	0	Median	78461000	43646000	34815000	0	0	0	0	0	0	50559000	30582000	19976000	27902000	13063000	14839000	33525	416	31714	207032;207033	279746	279746			1	
LQNEILK	1	Unmodified	856.50182	0.5018177	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	29.343	28.508	2	0.0069761	23969	160511_QHF_FH_JSI12i_2	89.142	22.11			0.77524	0.87113	67.041	10	1	Median	1.1649	0.96247	85.131	3	1	Median	0.72386	0.87113	8.6561	2	0	Median	0.68534	0.67816	16.894	2	0	Median	1.12	1.1983	95.644	3	0	Median	2141600000	1080900000	1060700000	506370000	210340000	296030000	545230000	295340000	249890000	532210000	303600000	228610000	557780000	271630000	286160000	33526	2252	31715	207034;207035;207036;207037;207038;207039;207040;207041;207042;207043	279747;279748;279749;279750;279751;279752;279753;279754;279755;279756;279757;279758;279759	279750			13	
LQNELDMVK	1	Unmodified	1088.5536	0.55359527	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.731	43.094	2	0.0069532	39049	160511_QHF_FH_JSI12i_1	53.968	25.75			0.76082	0.7778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76082	0.7778	NaN	1	0	Median	54837000	34644000	20193000	0	0	0	0	0	0	0	0	0	54837000	34644000	20193000	33527	1694	31716	207044	279760	279760			1	
LQNELDTLK	1	Unmodified	1072.5764	0.57643921	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.744	40.107	2	0.005133	35419	160511_QHF_FH_JSI9i_1	64.711	8.2799			0.38459	0.43868	48.475	4	2	Linear	1.8069	1.4801	NaN	1	1	Median	0.4565	0.53355	NaN	1	0	Median	0.60534	0.59729	NaN	1	1	Median	0.54357	0.56245	NaN	1	0	Median	359790000	196500000	163290000	74794000	28672000	46122000	91223000	60639000	30585000	113740000	60591000	53151000	80032000	46597000	33435000	33528	1360	31717	207045;207046;207047;207048	279761;279762;279763;279764	279764			4	
LQNFAQLPAHR	0	Unmodified	1293.6942	0.69420335	1540	P42575	CASP2	Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				39.685	38.173	2;3	0.00046728	31273	160511_QHF_FH_JSI9i_3	44.024	39.135			0.98697	0.79838	NaN	1	0	Median	0.98697	0.79838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67468000	32836000	34632000	67468000	32836000	34632000	0	0	0	0	0	0	0	0	0	33529	1540	31718	207049;207050	279765;279766	279765			2	
LQNIFLGLVNIIEEK	1	Unmodified	1741.9978	0.99782174	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.64		2	5						8	3	4	4	4	101.06	96.545	2;3	8.3348E-63	51656	160513_QHF_FH_JSI11Kac_6	248.19	192.62			0.99775	1.0347	21.113	15	3	Median	1.2651	1.0862	22.932	3	1	Plateau	0.71112	0.82498	20.127	4	1	Linear	1.3805	1.292	24.009	4	0	Median	0.943	0.96881	14.343	4	1	Median	2147900000	1001900000	1146000000	423160000	192920000	230240000	403250000	223880000	179370000	719270000	298120000	421150000	602220000	287030000	315190000	33530	238	31719	207051;207052;207053;207054;207055;207056;207057;207058;207059;207060;207061;207062;207063;207064;207065	279767;279768;279769;279770;279771;279772;279773;279774;279775;279776;279777;279778;279779;279780;279781;279782;279783;279784;279785;279786;279787;279788;279789;279790	279773			23	
LQNIIDNQK	1	Unmodified	1084.5877	0.58767259	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				30.188	28.915	2	0.039161	25173	160511_QHF_FH_JSI9i_1	46.39	27.614			1.1651	0.94038	NaN	1	1	Median	1.1651	0.94038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20432000	8187100	12245000	20432000	8187100	12245000	0	0	0	0	0	0	0	0	0	33531	204	31720	207066	279791	279791			1	
LQNIKYPSATNNTPAK	2	Acetyl (K)	1800.937	0.9370124	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		52.911	43.373	3	0.034579	23654	160513_QHF_FH_JSI11Kac_3	38.613	30.436			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33532	3736	31721	207067	279792	279792			1	
LQNLQLQPGNAK	1	Unmodified	1322.7306	0.73064844	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.48	4		1				2		1	3	2	1	2	55.931	51.903	2	8.2602E-05	22072	160513_QHF_FH_JSI12Kac_4	90.629	79.8			0.99105	1.0479	49.752	8	4	Median	2.4073	2.0455	72.845	3	2	Median	0.75426	0.87952	11.949	2	2	Median	0.90983	0.88033	NaN	1	0	Median	1.0777	1.1515	0.51994	2	0	Median	922090000	408350000	513750000	368070000	121860000	246210000	235080000	133090000	101980000	210860000	102750000	108110000	108090000	50641000	57445000	33533	1207	31722	207068;207069;207070;207071;207072;207073;207074;207075	279793;279794;279795;279796;279797;279798;279799	279798			7	
LQNLQLQPGNAKL	1	Unmodified	1435.8147	0.81471242	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	59.779	58.965	2	1.2371E-05	51136	160511_QHF_FH_JSI11i_2	123.86	105.59			1.0822	1.1288	14.161	5	0	Median	1.2121	1.0234	NaN	1	0	Median	0.86585	1.0028	16.749	2	0	Median	1.2946	1.2693	NaN	1	0	Median	1.0822	1.2118	NaN	1	0	Median	262580000	136570000	126020000	39754000	19399000	20354000	72976000	39402000	33574000	64916000	28985000	35932000	84936000	48780000	36157000	33534	1207	31723	207076;207077;207078;207079;207080	279800;279801;279802;279803;279804;279805;279806;279807;279808	279806			9	
LQNNNVYTIAK	1	Unmodified	1276.6776	0.67755023	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	34.731	34.085	2	0.00066404	30579	160511_QHF_FH_JSI10i_1	82.831	48.658			0.92444	1.0277	64.113	8	7	Median	1.3752	1.1908	NaN	1	1	Median	0.53446	0.62623	92.138	2	2	Median	1.0679	1.0782	92.351	3	3	Median	0.84839	0.93184	7.0681	2	1	Median	880950000	515720000	365240000	58392000	25747000	32645000	169730000	117010000	52717000	353110000	206720000	146380000	299720000	166240000	133490000	33535	2046	31724	207081;207082;207083;207084;207085;207086;207087;207088	279809;279810;279811;279812;279813;279814;279815;279816;279817	279814			9	
LQNNNVYTIAKR	1	Acetyl (K)	1474.7892	0.78922595	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		52.425	41.7	2	0.015906	23126	160513_QHF_FH_JSI11Kac_5	72.643	36.309			0.27116	0.26854	10.091	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27116	0.26854	10.091	2	0	Median	NaN	NaN	NaN	0	0	Median	9105400	7300300	1805100	0	0	0	0	0	0	9105400	7300300	1805100	0	0	0	33536	2046	31725	207089;207090	279818	279818	2111		1	
LQNPAITGPAVPYSR	0	Unmodified	1582.8467	0.84674083	4199	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.243	55.736	2	0.0044952	48264	160511_QHF_FH_JSI11i_2	54.776	39.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33537	4199	31726	207091	279819	279819			1	
LQNQLQGAIVIERPNVK	1	Unmodified	1919.0952	0.095244374	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			58.868	57.328	3	0.0032605	46953	160511_QHF_FH_JSI9i_3	51.265	40.449			1.156	1.1023	0.78257	2	2	Median	1.3277	1.0962	NaN	1	1	Median	1.0065	1.1084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71170000	32010000	39160000	41149000	16949000	24200000	30021000	15061000	14960000	0	0	0	0	0	0	33538	507	31727	207092;207093	279820;279821	279821			2	
LQNSDDDEK	1	Unmodified	1062.4465	0.44654725	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0				By MS/MS	12	0					1								1	5.4302	-1.7	2	0.043353	1602	160513_QHF_FH_JSI12Kac_2	43.246	14.734			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33539	3778	31728	207094	279822	279822			1	
LQNSYQPTNK	1	Unmodified	1191.5884	0.58840088	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	1	3	3	17.279	13.349	2	6.2473E-11	11383	160511_QHF_FH_JSI10i_1	145.72	115.54			0.96197	1.0254	8.1755	8	0	Median	1.2802	1.0277	NaN	1	0	Median	0.86766	1.0232	NaN	1	0	Median	0.93235	0.90456	13.378	3	0	Plateau	0.90408	0.96248	5.1841	3	0	Median	939400000	441330000	498070000	242230000	97482000	144750000	232470000	125160000	107310000	216450000	99370000	117080000	248250000	119320000	128930000	33540	3216	31729	207095;207096;207097;207098;207099;207100;207101;207102	279823;279824;279825;279826;279827;279828;279829;279830;279831;279832;279833	279828			11	
LQNTGVADGYPVR	0	Unmodified	1388.7048	0.70482762	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	36.231	35.538	2	0.0028636	32193	160511_QHF_FH_JSI12i_1	69.721	23.259			0.81931	0.82519	0.41968	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84886	0.82764	NaN	1	0	Median	0.79079	0.82274	NaN	1	0	Median	114770000	56990000	57783000	15307000	6537000	8769900	0	0	0	53247000	26411000	26836000	46219000	24041000	22178000	33541	3805	31730	207103;207104;207105	279834;279835	279834			2	
LQNVEQLPPDEIK	1	Unmodified	1521.8039	0.80387296	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	52.587	51.921	2	4.7618E-11	46675	160511_QHF_FH_JSI10i_1	116.03	95.027			0.70022	0.70333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70022	0.70333	NaN	1	0	Median	27834000	14813000	13022000	0	0	0	0	0	0	0	0	0	27834000	14813000	13022000	33542	3862	31731	207106;207107;207108;207109;207110;207111;207112	279836;279837;279838;279839;279840;279841;279842;279843	279841			8	
LQNYGELGPGTTGASSSGAGLHWGGPTQSSAYGK	1	Unmodified	3292.5385	0.53849716	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		66.106	65.361	3	2.856E-27	58135	160511_QHF_FH_JSI11i_3	111.79	107.31			1.045	1.0873	0.13855	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95798	1.0883	NaN	1	1	Median	1.14	1.0862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73093000	41121000	31973000	0	0	0	11859000	7645400	4214100	61234000	33475000	27759000	0	0	0	33543	5136	31732	207113;207114	279844;279845;279846	279844			3	
LQPALPPEAQSVPELEEVAR	0	Unmodified	2172.1426	0.14264808	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	7									2	2	1	2	86.375	86.013	2;3	4.6052E-06	76522	160511_QHF_FH_JSI9i_1	98.531	76.299			0.67857	0.70321	26.119	4	2	Median	1.3534	1.1361	NaN	1	1	Median	0.62555	0.68354	9.31	2	1	Median	0.69625	0.67736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65696000	37615000	28081000	7759800	2444500	5315300	23236000	14845000	8390800	34701000	20326000	14375000	0	0	0	33544	3760	31733	207115;207116;207117;207118;207119;207120;207121	279847;279848;279849;279850;279851;279852	279851			6	
LQPAYQVTLPGQEPIVK	1	Unmodified	1880.0407	0.040749188	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	74.7	74.063	2;3	4.3637E-07	67388	160511_QHF_FH_JSI11i_1	93.011	61.825			0.7976	0.97046	32.927	4	1	Linear	0.89263	0.72619	43.223	2	1	Median	0.96153	1.1214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92014	0.95537	NaN	1	0	Median	170530000	77638000	92889000	65805000	35161000	30644000	51547000	20616000	30931000	0	0	0	53175000	21861000	31313000	33545	1512	31734	207122;207123;207124;207125;207126	279853;279854;279855;279856	279853			2	
LQPFATEADVEEALR	0	Unmodified	1687.8417	0.84171503	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.65	0.588	7	9	1							5	5	5	2	81.461	80.86	2;3	4.1468E-07	71107	160511_QHF_FH_JSI11i_2	159.64	106.85			0.93938	0.92554	34.472	17	11	Median	1.0843	0.92554	60.845	5	2	Median	0.66557	0.76733	23.512	5	4	Median	0.93938	0.9528	12.671	5	4	Median	0.97922	1.042	6.6772	2	1	Median	2546600000	1369400000	1177100000	420030000	233880000	186150000	866820000	514030000	352790000	869390000	423450000	445940000	390340000	198090000	192260000	33546	1410	31735	207127;207128;207129;207130;207131;207132;207133;207134;207135;207136;207137;207138;207139;207140;207141;207142;207143	279857;279858;279859;279860;279861;279862;279863;279864;279865;279866;279867;279868;279869;279870;279871;279872;279873;279874	279872			18	
LQPGDMAAITTK	1	Unmodified	1244.6435	0.64347291	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.819	51.323	2	0.001217	46668	160511_QHF_FH_JSI12i_1	64.439	44.109			0.54262	0.53992	11.096	3	0	Median	NaN	NaN	NaN	0	0	Median	0.42545	0.50086	NaN	1	0	Median	0.54262	0.53992	NaN	1	0	Median	0.60542	0.62312	NaN	1	0	Median	340860000	229370000	111490000	0	0	0	108600000	78757000	29839000	133410000	90257000	43151000	98853000	60357000	38496000	33547	2677	31736	207144;207145;207146;207147	279875;279876;279877;279878;279879	279876			5	
LQPGIAQQWIQSK	1	Unmodified	1495.8147	0.81471242	324	O43353	RIPK2	Receptor-interacting serine/threonine-protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		66.437	65.443	2	0.0001272	58247	160511_QHF_FH_JSI11i_3	86.313	38.489			0.85916	0.88545	9.0857	3	0	Median	1.0728	0.88545	NaN	1	0	Median	0.82374	0.94906	NaN	1	0	Median	0.85916	0.79261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105160000	52470000	52693000	32938000	14648000	18290000	33467000	16863000	16604000	38758000	20960000	17798000	0	0	0	33548	324	31737	207148;207149;207150	279880;279881;279882;279883;279884	279881			5	
LQPGSLPQVLAQATEMLYMR	0	Unmodified	2245.1599	0.15989482	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.88	102.88	3	2.02E-12	91997	160511_QHF_FH_JSI11i_3	105.67	96.417			1.1189	1.0019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1189	1.0019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48037000	21284000	26752000	0	0	0	0	0	0	48037000	21284000	26752000	0	0	0	33549	2284	31738	207151	279885	279885			1	
LQPHEFQGGTFTISNLGMFGIK	1	Unmodified	2421.2151	0.21510151	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.63		3	4						5	3	3	3	3	96.188	93.115	3	3.6159E-60	46361	160513_QHF_FH_JSI10Kac_6	197.68	151.65			0.93908	0.95127	22.015	11	1	Median	1.037	0.83469	18.159	3	0	Median	0.89858	1.0761	18.688	3	0	Plateau	1.0085	0.95127	19.366	3	0	Plateau	1.1405	1.178	28.307	2	1	Median	2085900000	1089700000	996180000	299080000	135020000	164060000	498520000	288580000	209940000	497590000	260490000	237100000	790720000	405640000	385080000	33550	970	31739	207152;207153;207154;207155;207156;207157;207158;207159;207160;207161;207162;207163	279886;279887;279888;279889;279890;279891;279892;279893;279894;279895;279896;279897;279898;279899;279900;279901;279902;279903;279904;279905;279906;279907	279906			22	
LQPHLLEMLIQLPANSVTK	1	Oxidation (M)	2160.1977	0.19766054	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	1	0	By matching	By MS/MS			3	0			2							1	1			101	100.81	3	5.1819E-05	83401	160511_QHF_FH_JSI10i_3	65.25	56.307			0.59449	0.58115	3.4386	2	0	Median	0.71379	0.59545	NaN	1	0	Median	0.49513	0.56719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80407000	50759000	29648000	33447000	21375000	12072000	46960000	29385000	17576000	0	0	0	0	0	0	33551	3943	31740	207164;207165	279908	279908		2363	1	
LQPHLLEMLIQLPANSVTK	1	Unmodified	2144.2027	0.20274591	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	101.88	101.78	3	4.7969E-08	88214	160511_QHF_FH_JSI12i_3	99.508	93.798			0.94739	0.97546	29.926	3	1	Plateau	0.723	0.58371	NaN	1	0	Median	0.84003	0.98481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94739	0.97546	NaN	1	0	Median	764940000	427690000	337250000	83825000	42376000	41450000	188450000	101240000	87214000	0	0	0	492670000	284080000	208590000	33552	3943	31740	207166;207167;207168	279909;279910;279911;279912;279913;279914	279913			6	
LQPHNLADVLTVNPDSPASDPTVFHK	1	Unmodified	2811.4192	0.41915729	1326	P29597	TYK2	Non-receptor tyrosine-protein kinase TYK2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	78.995	78.825	4	1.3134E-10	70448	160511_QHF_FH_JSI11i_3	83.312	80.838			0.92267	0.90646	1.7038	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9581	0.90646	NaN	1	0	Median	0.88685	0.9127	2.3436	2	1	Median	88237000	41641000	46596000	0	0	0	0	0	0	41662000	21781000	19881000	46575000	19860000	26715000	33553	1326	31741	207169;207170;207171	279915;279916	279915			2	
LQPHPGLEK	1	Unmodified	1017.5607	0.56072956	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	16.507	16.128	2	0.00057375	13142	160511_QHF_FH_JSI11i_3	78.149	22.027			1.488	1.3779	32.761	5	2	Median	NaN	NaN	NaN	0	0	Median	0.88553	1.0923	NaN	1	0	Median	1.3965	1.3611	1.7337	2	0	Median	2.1401	2.2167	13.762	2	2	Median	354040000	135660000	218380000	0	0	0	46807000	25069000	21738000	149400000	50001000	99401000	157830000	60593000	97240000	33554	2508	31742	207172;207173;207174;207175;207176	279917;279918;279919;279920	279917			4	
LQPHPQLSPEIR	0	Unmodified	1413.7728	0.7728476	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.065	37.975	3	8.9112E-05	33364	160511_QHF_FH_JSI11i_3	60.628	47.093			1.1756	1.1515	18.235	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0753	1.0122	NaN	1	0	Median	1.2854	1.31	NaN	1	1	Median	386750000	154240000	232510000	0	0	0	0	0	0	144680000	71677000	73001000	242070000	82562000	159510000	33555	2479	31743	207177;207178	279921;279922	279921			2	
LQPIALSCVLNIGACK	1	Unmodified	1755.9375	0.93754644	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.895	99.913	3	3.0146E-05	86538	160511_QHF_FH_JSI12i_3	82.651	62.812			1.41	1.4372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.41	1.4372	NaN	1	0	Median	16298000	5501800	10797000	0	0	0	0	0	0	0	0	0	16298000	5501800	10797000	33556	2276	31744	207179	279923;279924	279923			2	
LQPLLNHLSHSYTGQDYSTQGNVGK	1	Unmodified	2756.3518	0.351806	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	2	3		56.654	55.547	3;4	4.5896E-11	46463	160511_QHF_FH_JSI10i_3	85.805	79.082			0.88675	0.84778	55.649	6	4	Median	1.9862	1.6273	55.973	3	2	Plateau	0.43692	0.52174	40.959	2	1	Median	1.0882	1.0312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	344900000	148040000	196860000	140200000	46037000	94160000	106660000	67393000	39271000	98036000	34608000	63428000	0	0	0	33557	1670	31745	207180;207181;207182;207183;207184;207185;207186;207187	279925;279926;279927;279928;279929;279930;279931;279932;279933;279934	279928			10	
LQPLSPVPSDIEISR	0	Unmodified	1649.8988	0.89883598	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	4	4								3	2	3		74.871	74.284	2	0.00084986	67596	160511_QHF_FH_JSI11i_1	83.182	45.096			1.1445	1.0129	12.175	8	6	Median	1.3	1.0402	11.587	3	2	Median	0.75563	0.90534	1.2649	2	1	Median	1.159	1.0944	11.328	3	3	Median	NaN	NaN	NaN	0	0	Median	343740000	171960000	171780000	81228000	35984000	45244000	104020000	65177000	38840000	158490000	70795000	87696000	0	0	0	33558	3141	31746	207188;207189;207190;207191;207192;207193;207194;207195	279935;279936;279937;279938;279939;279940;279941;279942;279943;279944	279936			10	
LQPNKPSK	2	Unmodified	910.52362	0.52361577	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	7.174	6.93	3	0.013939	4837	160511_QHF_FH_JSI10i_3	37.191	20.989			0.92986	0.99881	17.383	4	0	Median	1.5274	1.2294	NaN	1	0	Median	0.85456	0.98464	NaN	1	0	Median	0.8565	0.80391	NaN	1	0	Median	1.0095	1.0132	NaN	1	0	Median	563610000	273390000	290220000	124780000	47759000	77021000	125620000	61011000	64611000	120400000	56181000	64222000	192810000	108440000	84362000	33559	5051	31747	207196;207197;207198;207199	279945;279946	279945			2	
LQPQEISPPPTANLDR	0	Unmodified	1774.9214	0.92136233	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	57.055	56.517	2	8.4016E-05	51290	160511_QHF_FH_JSI12i_1	87.001	52.308			1.0081	1.0247	4.1274	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0244	0.99521	NaN	1	0	Median	0.99208	1.055	NaN	1	0	Median	70206000	35384000	34822000	0	0	0	0	0	0	33991000	17542000	16449000	36215000	17842000	18373000	33560	2229	31748	207200;207201	279947;279948	279947			2	
LQPQEISPPPTANLDRSNDK	1	Unmodified	2219.1182	0.11822424	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	72.662	72.306	3	0.050768	64467	160511_QHF_FH_JSI11i_3	24.893	10.852			0.72849	0.69307	6.0606	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.57361	0.7122	NaN	1	0	Median	0.73338	0.69307	NaN	1	0	Median	0.62716	0.63426	NaN	1	0	Median	544310000	323330000	220980000	0	0	0	110430000	50320000	60108000	268690000	181720000	86968000	165190000	91287000	73903000	33561	2229	31749	207202;207203;207204	279949;279950	279949			2	
LQPQITMIPPSAQPPR	0	Unmodified	1772.9607	0.96072473	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5									4	5	2	69.179	68.636	2;3	0.00030554	62401	160511_QHF_FH_JSI11i_1	56.872	48.695			0.73773	0.83877	32.429	6	3	Median	NaN	NaN	NaN	0	0	Median	0.5459	0.63952	20.725	2	2	Median	1.0842	1.0646	42.984	3	1	Plateau	0.86794	0.95015	NaN	1	0	Median	179530000	100610000	78922000	0	0	0	64999000	43944000	21055000	95210000	44704000	50506000	19326000	11964000	7361500	33562	2084	31750	207205;207206;207207;207208;207209;207210;207211;207212;207213;207214;207215	279951;279952;279953;279954;279955;279956;279957;279958;279959;279960;279961	279951			11	
LQPSFEALK	1	Unmodified	1031.5651	0.56514624	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.494	52.971	2	0.01115	45756	160511_QHF_FH_JSI11i_2	58.596	25.986			2.4981	2.4896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4981	2.4896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28908000	9646800	19261000	0	0	0	0	0	0	28908000	9646800	19261000	0	0	0	33563	5458	31751	207216	279962	279962			1	
LQPSIIFIDEIDSFLR	0	Unmodified	1905.0248	0.024764773	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	103.43	103.27	2	7.3337E-05	89202	160511_QHF_FH_JSI12i_2	101.6	60.312			1.0595	1.1587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0595	1.1587	NaN	1	1	Median	19160000	8514900	10645000	0	0	0	0	0	0	0	0	0	19160000	8514900	10645000	33564	3605	31752	207217	279963	279963			1	
LQPSSSPENSLDPFPPR	0	Unmodified	1866.9112	0.91119158	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		64.449	64.006	2	2.9552E-05	58239	160511_QHF_FH_JSI11i_1	93.959	60.093			1.0293	1.0051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0293	1.0051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54153000	28584000	25568000	0	0	0	0	0	0	54153000	28584000	25568000	0	0	0	33565	3801	31753	207218;207219	279964;279965	279964			2	
LQPSSTSESMDQLLNK	1	Unmodified	1776.8564	0.85637882	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				61.896	60.81	2	6.7573E-05	53899	160511_QHF_FH_JSI9i_1	90.793	74.928			0.34925	0.29267	NaN	1	0	Median	0.34925	0.29267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78899000	56868000	22031000	78899000	56868000	22031000	0	0	0	0	0	0	0	0	0	33566	4302	31754	207220	279966	279966			1	
LQPTWNDLGDK	1	Unmodified	1285.6303	0.63026569	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.54	4.5	5	5	1				2			3	4	3	3	55.267	52.863	2	2.4822E-05	48096	160511_QHF_FH_JSI12i_1	103.7	61.721			0.9212	0.96021	24.102	12	6	Median	0.94564	0.79909	12.054	2	1	Median	0.72666	0.86543	16.723	4	3	Median	1.0514	1.0125	14.967	3	2	Median	1.0114	1.0876	24.088	3	0	Plateau	3544500000	1881700000	1662800000	491010000	260800000	230220000	1297500000	764780000	532690000	983580000	477990000	505590000	772420000	378100000	394310000	33567	3603	31755	207221;207222;207223;207224;207225;207226;207227;207228;207229;207230;207231;207232;207233	279967;279968;279969;279970;279971;279972;279973;279974;279975;279976;279977;279978;279979;279980;279981;279982;279983	279971			17	
LQPYNGVALRPWDGNSDDR	0	Unmodified	2172.0348	0.034828962	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			63.932	62.421	3	0.0071034	52373	160511_QHF_FH_JSI10i_3	40.085	5.1752			0.89017	1.0537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89017	1.0537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15497000	8870900	6625800	0	0	0	15497000	8870900	6625800	0	0	0	0	0	0	33568	2825	31756	207234	279984	279984			1	
LQQAAQQHIQQQLLAK	1	Unmodified	1845.0221	0.022079431	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	40.968	40.391	3	5.5996E-05	33809	160511_QHF_FH_JSI10i_3	74.789	66.613			0.74107	0.81865	27.084	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0776	1.1888	NaN	1	0	Median	0.76081	0.70206	NaN	1	0	Median	0.72775	0.81865	NaN	1	0	Median	175160000	98343000	76815000	0	0	0	29452000	18856000	10597000	72167000	37775000	34392000	73539000	41712000	31826000	33569	5368	31757	207235;207236;207237	279985;279986	279985			2	
LQQALAEQQQQNNTSGK	1	Unmodified	1884.929	0.92896691	5582	Q9Y3C7	MED31	Mediator of RNA polymerase II transcription subunit 31	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				19.501	18.37	2	1.0642E-07	15422	160511_QHF_FH_JSI9i_1	99.941	78.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33570	5582	31758	207238	279987	279987			1	
LQQDSEIMESSYK	1	Unmodified	1556.7028	0.70283829	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	38.74	38.123	2	0.00010642	33626	160511_QHF_FH_JSI9i_1	91.936	31.373			0.89479	0.96785	33.804	5	3	Median	0.89479	0.71381	NaN	1	0	Median	0.82411	0.96785	NaN	1	0	Median	1.2458	1.1861	NaN	1	1	Median	0.78578	0.80377	54.653	2	2	Median	160270000	81937000	78332000	25280000	14224000	11056000	42614000	23147000	19467000	39744000	14546000	25198000	52631000	30020000	22611000	33571	3867	31759	207239;207240;207241;207242;207243	279988;279989;279990;279991;279992;279993	279993			6	
LQQDVLQFQK	1	Unmodified	1245.6717	0.67173657	3592	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.633	51.137	2	0.0016869	46495	160511_QHF_FH_JSI12i_1	76.221	42.133			0.85499	0.84351	10.697	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.76067	0.91269	NaN	1	1	Median	0.86283	0.84351	NaN	1	1	Median	0.72149	0.73859	NaN	1	1	Median	232980000	130460000	102520000	0	0	0	78404000	44844000	33561000	85826000	45610000	40215000	68754000	40009000	28745000	33572	3592	31760	207244;207245;207246	279994;279995;279996	279995			3	
LQQEELNK	1	Unmodified	1000.5189	0.51892433	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		14.855	14.393	2	0.0063105	11824	160511_QHF_FH_JSI10i_1	72.492	7.1796			0.99933	1.1612	28.047	3	0	Median	0.98133	0.79163	NaN	1	0	Median	0.99933	1.1612	NaN	1	0	Median	1.387	1.3672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	119160000	60432000	58728000	41873000	17835000	24037000	49198000	26708000	22491000	28089000	15888000	12200000	0	0	0	33573	3706	31761	207247;207248;207249	279997	279997			1	
LQQEETQLEQSIQAGR	0	Unmodified	1856.9228	0.9228189	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.408	47.726	2	1.7036E-21	42998	160511_QHF_FH_JSI10i_1	204.13	188.5			0.96637	1.0458	8.426	4	0	Median	1.3849	1.1187	NaN	1	0	Median	0.90982	1.0955	NaN	1	0	Median	0.96597	0.93312	NaN	1	0	Median	0.96678	0.99841	NaN	1	0	Median	251720000	129640000	122080000	59287000	25910000	33377000	67108000	34970000	32138000	77360000	44883000	32477000	47965000	23876000	24089000	33574	5230	31762	207250;207251;207252;207253	279998;279999;280000;280001;280002;280003;280004;280005	280003			8	
LQQEEVQKK	2	Unmodified	1128.6139	0.61388734	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	7.7129	7.2542	2;3	0.00021828	5238	160511_QHF_FH_JSI10i_2	72.006	36.062			0.91617	1.1242	44.112	5	1	Median	1.7673	1.5127	NaN	1	0	Median	0.91617	1.1242	NaN	1	0	Median	1.309	1.3446	NaN	1	0	Median	0.58898	0.66143	40.484	2	1	Median	613490000	296180000	317310000	118790000	48678000	70116000	135240000	75681000	59557000	158050000	72119000	85926000	201410000	99705000	101710000	33575	3328	31763	207254;207255;207256;207257;207258	280006;280007;280008;280009;280010;280011;280012;280013	280012			8	
LQQELDDLLVDLDHQR	0	Unmodified	1948.9854	0.98541915	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.258		13	1							5	2	3	4	90.275	89.791	2;3	5.0639E-30	77356	160511_QHF_FH_JSI12i_2	189.3	155.34			0.78009	0.78413	28.994	12	4	Median	0.80146	0.67525	38.792	5	2	Median	0.6397	0.77818	NaN	1	0	Median	0.74023	0.69613	11.366	3	1	Median	0.88454	0.97972	17.778	3	1	Median	1216100000	688360000	527750000	275130000	161890000	113240000	248570000	159540000	89034000	357960000	171700000	186260000	334430000	195230000	139210000	33576	1436	31764	207259;207260;207261;207262;207263;207264;207265;207266;207267;207268;207269;207270;207271;207272	280014;280015;280016;280017;280018;280019;280020;280021;280022;280023;280024;280025;280026;280027;280028;280029;280030	280015			13	
LQQELEAANQSLAELR	0	Unmodified	1811.9377	0.93774068	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	65.999	65.405	2	5.0438E-05	59611	160511_QHF_FH_JSI12i_1	97.551	59.149			0.78429	0.75436	42.066	2	2	Median	1.263	1.0157	NaN	1	1	Median	0.48701	0.56027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71321000	52626000	18694000	19883000	7115800	12767000	29432000	23505000	5927100	22006000	22006000	0	0	0	0	33577	2841	31765	207273;207274;207275;207276;207277	280031;280032;280033;280034;280035	280032			5	
LQQELEFLEVQEEYIKDEQK	2	Unmodified	2537.2537	0.25371467	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	88.543	88.027	3	1.3686E-12	76472	160511_QHF_FH_JSI12i_3	140.97	133.26			0.93032	0.98961	15.774	4	0	Median	0.9012	0.7903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8457	0.90125	NaN	1	0	Median	1.0105	1.0911	0.58153	2	0	Median	186560000	97968000	88591000	31315000	16744000	14570000	0	0	0	38493000	21842000	16651000	116750000	59381000	57370000	33578	1567	31766	207278;207279;207280;207281	280036;280037;280038;280039;280040;280041;280042;280043;280044;280045;280046;280047	280046			12	
LQQENLAEFFPQNYFR	0	Unmodified	2042.985	0.98502522	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.71	100.63	2	0.00085329	88418	160511_QHF_FH_JSI9i_2	63.76	50.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33579	5637	31767	207282	280048	280048			1	
LQQENSILR	0	Unmodified	1099.5986	0.59857163	5213	Q9P2E9;Q8N4C6	RRBP1;NIN	Ribosome-binding protein 1;Ninein	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6	5.66		4					2			1	2	2	1	31.324	27.542	2	0.0046155	23073	160511_QHF_FH_JSI12i_2	56.659	18.337			0.71102	0.7958	18.919	6	0	Median	0.59249	0.50943	NaN	1	0	Median	0.65771	0.78794	6.3341	2	0	Median	0.82076	0.81562	4.7254	2	0	Median	0.71578	0.80284	NaN	1	0	Median	384430000	223640000	160790000	79920000	44111000	35809000	84677000	53736000	30941000	124020000	68149000	55873000	95814000	57644000	38170000	33580	5213	31768	207283;207284;207285;207286;207287;207288	280049;280050;280051;280052;280053	280049			5	
LQQESTFLFHGNK	1	Unmodified	1547.7732	0.77324153	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	2	2	3	2	46.764	43.783	2;3	2.1073E-08	37195	160511_QHF_FH_JSI12i_3	141.08	124.83			1.1517	1.1607	35.067	7	1	Median	1.5657	1.3605	NaN	1	1	Median	1.4903	1.7933	NaN	1	0	Median	1.5834	0.97557	54.428	3	0	Plateau	1.1146	1.1291	3.9074	2	0	Median	1567000000	719740000	847270000	14005000	6640000	7365300	233290000	87962000	145330000	192140000	90666000	101470000	1127600000	534470000	593100000	33581	5382	31769	207289;207290;207291;207292;207293;207294;207295;207296;207297	280054;280055;280056;280057;280058;280059;280060;280061;280062;280063	280062			10	
LQQETAELEESVESGK	1	Unmodified	1775.8425	0.84250289	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.143	47.729	2	0.00032292	43160	160511_QHF_FH_JSI11i_1	83.877	67.245			0.68348	0.65602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68348	0.65602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36687000	25876000	10811000	0	0	0	0	0	0	36687000	25876000	10811000	0	0	0	33582	1537	31770	207298	280064	280064			1	
LQQEVEEQLK	1	Unmodified	1242.6456	0.6455814	4741	Q9H6D7	HAUS4	HAUS augmin-like complex subunit 4	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				103.22	94.022	2	0.034715	54403	160513_QHF_FH_JSI9Kac_6	51.346	2.5517			0.059293	0.050636	NaN	1	1	Median	0.059293	0.050636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25174000	23363000	1810700	25174000	23363000	1810700	0	0	0	0	0	0	0	0	0	33583	4741	31771	207299	280065	280065			1	
LQQEWLK	1	Unmodified	943.51272	0.51271674	4588	Q9C0G6	DNAH6	Dynein heavy chain 6, axonemal	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			4								2	1	1	25.852	25.229	3	0.048133	22805	160511_QHF_FH_JSI12i_3	18.731	4.7279			1.6598	1.6996	101.44	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71652	0.81632	130.37	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6598	1.6996	NaN	1	0	Median	491720000	206720000	285000000	0	0	0	211510000	85159000	126350000	71742000	15506000	56236000	208470000	106060000	102410000	33584	4588	31772	207300;207301;207302;207303	280066;280067	280067			2	
LQQGIVTSTTQQMIDR	0	Unmodified	1817.9305	0.93054681	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.6	0.49		2	3							1		2	2	58.509	58.013	2	5.7954E-05	50370	160511_QHF_FH_JSI11i_2	93.011	35.662			1.1875	1.2296	11.504	3	1	Median	1.1473	1.0129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2586	1.236	0.73651	2	1	Median	NaN	NaN	NaN	0	0	Median	92712000	39958000	52753000	31079000	13498000	17582000	0	0	0	61632000	26461000	35172000	0	0	0	33585	3003	31773	207304;207305;207306;207307;207308	280068;280069;280070;280071;280072;280073;280074	280071			7	
LQQGLAANPSGYGPLTELPDWSYADGRPAPPMK	1	Unmodified	3496.7085	0.70853937	3311	Q86TS9	MRPL52	39S ribosomal protein L52, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	94.909	94.807	3	5.0135E-07	83894	160511_QHF_FH_JSI10i_2	53.968	45.77			0.96338	0.88265	19.602	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.99788	1.2547	NaN	1	1	Median	0.96338	0.88265	NaN	1	0	Median	0.85247	0.90578	NaN	1	0	Median	58314000	28393000	29921000	0	0	0	11382000	8503600	2878000	28165000	12338000	15827000	18768000	7551500	11216000	33586	3311	31774	207309;207310;207311	280075;280076;280077;280078;280079	280078			5	
LQQGYNAMGFSQGGQFLR	0	Unmodified	2000.9527	0.95267924	1719	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		71.827	70.795	2	1.4014E-11	62907	160511_QHF_FH_JSI10i_2	149.26	124.41			0.85644	0.97647	6.6265	3	0	Median	1.2779	1.059	NaN	1	0	Median	0.79461	0.95227	3.5484	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90077000	43105000	46972000	35123000	12896000	22227000	54954000	30210000	24744000	0	0	0	0	0	0	33587	1719	31775	207312;207313;207314;207315;207316	280080;280081;280082;280083;280084;280085;280086;280087;280088	280087			9	
LQQHQSMPGTMAEAEDLDGGTLSR	0	Unmodified	2571.1693	0.16934989	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	56.923	56.287	3	7.7268E-22	49619	160511_QHF_FH_JSI10i_2	139.46	135.59			1.1236	1.0858	13.954	3	0	Median	1.1236	0.98524	NaN	1	0	Median	1.0589	1.2973	NaN	1	0	Median	1.1664	1.0858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159290000	70451000	88843000	33347000	15926000	17421000	58525000	24298000	34228000	67421000	30227000	37194000	0	0	0	33588	5024	31776	207317;207318;207319;207320	280089;280090;280091;280092;280093;280094;280095;280096	280094			8	
LQQIAAALENK	1	Unmodified	1197.6717	0.67173657	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	48.358	47.294	2	2.3289E-05	40371	160511_QHF_FH_JSI12i_2	105.52	63.87			0.8558	0.80012	49.474	4	4	Median	0.80227	0.67719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91289	0.94538	NaN	1	1	Median	0.6345	0.70713	81.448	2	2	Median	300770000	195330000	105440000	77962000	53530000	24432000	27234000	27234000	0	92284000	53498000	38786000	103290000	61071000	42217000	33589	236	31777	207321;207322;207323;207324;207325;207326	280097;280098;280099;280100;280101;280102	280097			6	
LQQLEALR	0	Unmodified	969.56073	0.56072956	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.967	38.515	2	0.030226	32991	160511_QHF_FH_JSI11i_2	41.631	12.53			1.2187	1.2196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2187	1.2196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73869000	29634000	44235000	0	0	0	0	0	0	73869000	29634000	44235000	0	0	0	33590	1745	31778	207327	280103	280103			1	
LQQLEALRR	0	Unmodified	1125.6618	0.66184059	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.537	30.132	3	0.0087174	24576	160511_QHF_FH_JSI9i_3	46.158	18.145			1.123	0.90803	NaN	1	1	Median	1.123	0.90803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85579000	26630000	58949000	85579000	26630000	58949000	0	0	0	0	0	0	0	0	0	33591	1745	31779	207328	280104	280104			1	
LQQLFIELTLK	1	Unmodified	1344.8017	0.80168812	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.657	80.938	2	0.00066502	45549	160513_QHF_FH_JSI10Kac_6	84.658	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33592	100	31780	207329	280105	280105			1	
LQQLFNHTMFILEQEEYQR	0	Unmodified	2466.2002	0.20017973	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	1	3	2	4	86.807	81.958	3	2.3513E-71	43042	160513_QHF_FH_JSI10Kac_6	212.79	192.35			0.72223	0.82102	129.44	9	5	Median	1.4707	1.2436	NaN	1	0	Median	0.72277	0.83463	2.3242	2	1	Median	0.15417	0.14498	195.35	2	0	Median	0.77617	0.79872	122.33	4	4	Median	2515100000	1348200000	1167000000	441980000	141850000	300130000	1029600000	570180000	459370000	411890000	281530000	130370000	631710000	354620000	277100000	33593	1436;1437;1445	31781	207330;207331;207332;207333;207334;207335;207336;207337;207338;207339	280106;280107;280108;280109;280110;280111;280112;280113;280114;280115;280116;280117;280118;280119	280119			14	
LQQLGEAHQAETEVLRR	0	Unmodified	1977.0392	0.039186058	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			42.658	41.115	3;4	9.0093E-06	34326	160511_QHF_FH_JSI10i_3	86.367	76.267			0.90528	1.0201	21.421	3	1	Plateau	1.7742	1.4813	NaN	1	1	Median	0.9018	1.0222	0.28473	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194740000	101690000	93051000	16051000	5537800	10513000	178690000	96153000	82538000	0	0	0	0	0	0	33594	2587	31782	207340;207341;207342	280120;280121;280122;280123;280124	280123			5	
LQQLKEFR	1	Acetyl (K)	1102.6135	0.61349341	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		54.811	44.017	2	0.018088	24264	160513_QHF_FH_JSI11Kac_5	69.628	44.054			0.052246	0.051982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.052246	0.051982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20965000	20159000	806630	0	0	0	0	0	0	20965000	20159000	806630	0	0	0	33595	1282	31783	207343	280125	280125	1202		1	
LQQLLPLK	1	Unmodified	951.6117	0.6117025	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	59.932	59.256	2	0.0043669	52083	160511_QHF_FH_JSI9i_2	68.915	41.179			1.0363	1.0137	13.629	6	0	Median	1.0494	0.90421	NaN	1	0	Median	0.74481	0.88893	5.5606	2	0	Median	1.1663	1.1259	1.838	2	0	Median	1.0234	1.1675	NaN	1	0	Median	333130000	153580000	179550000	49076000	22470000	26606000	62351000	37544000	24807000	168490000	66512000	101980000	53213000	27053000	26160000	33596	1476	31784	207344;207345;207346;207347;207348;207349	280126;280127;280128;280129;280130;280131	280129			6	
LQQLPADFGR	0	Unmodified	1143.6037	0.60365701	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.58	4	8					2	2		3	3	5	5	51.091	47.731	2	2.396E-09	43110	160511_QHF_FH_JSI10i_1	145.17	111.38			0.94278	0.95912	27.762	16	10	Median	1.0949	0.90697	13.361	3	2	Median	0.77518	0.95323	13.177	3	2	Median	0.99175	0.96505	41.025	5	3	Median	0.89623	0.97188	28.607	5	3	Median	7817200000	4189200000	3628000000	1753200000	848080000	905160000	1959700000	1157300000	802310000	2453200000	1259600000	1193600000	1651100000	924170000	726950000	33597	3968	31785	207350;207351;207352;207353;207354;207355;207356;207357;207358;207359;207360;207361;207362;207363;207364;207365	280132;280133;280134;280135;280136;280137;280138;280139;280140;280141;280142;280143;280144;280145;280146;280147;280148;280149;280150;280151;280152;280153;280154;280155	280141			24	
LQQLQMEK	1	Unmodified	1016.5325	0.5324659	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.181	27.593	2	0.011949	24485	160511_QHF_FH_JSI10i_1	62.546	1.7864			1.9186	1.7968	22.126	4	4	Median	1.9456	1.5899	NaN	1	1	Median	1.4011	1.6317	NaN	1	1	Median	2.622	2.5662	NaN	1	1	Median	1.892	1.9784	NaN	1	1	Median	420110000	190520000	229600000	56180000	18225000	37956000	139360000	79396000	59968000	104100000	40549000	63549000	120470000	52346000	68123000	33598	1598	31786	207366;207367;207368;207369	280156;280157;280158;280159	280158			4	
LQQLQNQIR	0	Unmodified	1139.6411	0.64110515	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									3	1	27.448	26.944	2	0.015365	22646	160511_QHF_FH_JSI11i_2	54.549	28.99			0.75805	0.75979	45.236	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78938	0.73645	55.382	3	2	Median	0.72796	0.78387	NaN	1	0	Median	172850000	100050000	72797000	0	0	0	0	0	0	132820000	78268000	54550000	40029000	21782000	18247000	33599	3805	31787	207370;207371;207372;207373	280160;280161;280162;280163	280162			3	
LQQMQAESGFVQHVGFK	1	Unmodified	1932.9516	0.9516166	3468	Q8IYH5	ZZZ3	ZZ-type zinc finger-containing protein 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.387	59.387	3	0.00091049	52700	160511_QHF_FH_JSI11i_3	51.127	41.206			1.2266	1.1117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2266	1.1117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33253000	14982000	18271000	0	0	0	0	0	0	33253000	14982000	18271000	0	0	0	33600	3468	31788	207374	280164	280164			1	
LQQQAALSPTTAPAVSSVSK	1	Unmodified	1983.0637	0.063669474	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	51.481	50.77	2;3	6.7915E-14	45000	160511_QHF_FH_JSI9i_1	148.57	140.66			1.0021	0.97194	9.5888	7	1	Median	1.1488	0.96784	0.59757	2	0	Median	0.87011	1.0219	17.233	2	1	Median	0.91374	0.88709	NaN	1	0	Median	1.024	1.0652	0.70059	2	0	Median	365280000	191460000	173820000	108440000	47877000	60559000	104440000	59127000	45316000	34895000	20136000	14760000	117500000	64317000	53187000	33601	3813	31789	207375;207376;207377;207378;207379;207380;207381	280165;280166;280167;280168;280169;280170;280171;280172;280173;280174;280175	280174			11	
LQQQFNMHVFK	1	Unmodified	1418.7129	0.71288988	4932;5631	Q9NQX4;Q9Y4I1	MYO5C;MYO5A	Unconventional myosin-Vc;Unconventional myosin-Va	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	52.708	51.582	2;3	1.8766E-05	44056	160511_QHF_FH_JSI12i_3	79.07	66.71			1.6086	1.6369	12.793	3	0	Median	1.6777	1.3344	NaN	1	0	Median	1.4281	1.6887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6086	1.6369	NaN	1	0	Median	226550000	100520000	126030000	51835000	18256000	33579000	56180000	23024000	33156000	0	0	0	118540000	59244000	59296000	33602	4932;5631	31790	207382;207383;207384;207385	280176;280177;280178;280179;280180;280181	280180			6	
LQQQHSEQPPLQPSPVMTR	0	Unmodified	2200.1059	0.10588542	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	40.721	40.048	3	5.8521E-10	35049	160511_QHF_FH_JSI11i_3	121.44	112.49			1.1234	1.0852	16.585	6	0	Median	1.4021	1.1743	NaN	1	0	Median	0.83092	0.9971	NaN	1	0	Median	1.1234	1.0852	0.25478	2	0	Median	1.0689	1.1233	34.988	2	0	Median	427500000	214420000	213080000	73837000	31074000	42763000	91758000	50893000	40865000	163850000	79985000	83863000	98058000	52467000	45591000	33603	2906	31791	207386;207387;207388;207389;207390;207391;207392	280182;280183;280184;280185;280186;280187;280188;280189;280190;280191;280192;280193	280182			12	
LQQQLTQAAQELAAEK	1	Unmodified	1768.9319	0.93192702	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.466	63.925	2	0.00038011	57998	160511_QHF_FH_JSI11i_1	81.494	64.961			1.1282	1.1052	22.405	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3333	1.2949	NaN	1	1	Median	0.95457	0.94323	NaN	1	1	Median	27824000	8333900	19490000	0	0	0	0	0	0	15396000	5420900	9975200	12428000	2913000	9515000	33604	2627	31792	207393;207394	280194;280195	280194			2	
LQQQLTQAQETLK	1	Unmodified	1527.8257	0.82567103	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.355	38.728	2	2.1073E-08	34261	160511_QHF_FH_JSI9i_1	141.08	93.481			1.0124	1.0872	31.849	4	0	Linear	0.65069	0.53153	NaN	1	0	Median	0.87577	1.0151	NaN	1	0	Median	1.0935	1.0605	NaN	1	0	Median	0.74551	0.76457	NaN	1	0	Median	555290000	275270000	280020000	103790000	58165000	45626000	153100000	83173000	69931000	164570000	71238000	93332000	133830000	62694000	71132000	33605	5635	31793	207395;207396;207397;207398	280196;280197;280198;280199;280200;280201;280202	280202			7	
LQQQQAQQPLQQQQQR	0	Unmodified	1977.014	0.01403394	5033	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	19.842	19.477	2	2.1443E-35	16912	160511_QHF_FH_JSI12i_1	162.36	131.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33606	5033	31794	207399;207400;207401	280203;280204;280205	280204			3	
LQQQQQQQQLAQMK	1	Unmodified	1726.8785	0.87845166	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	27.076	26.644	2	4.1233E-08	23792	160511_QHF_FH_JSI12i_1	187.64	170.62			1.3326	1.3926	25.439	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.991	1.9219	NaN	1	1	Median	1.2238	1.2727	12.727	2	2	Median	103120000	43953000	59165000	0	0	0	0	0	0	19424000	4977900	14446000	83694000	38975000	44719000	33607	3172	31795	207402;207403;207404	280206;280207;280208	280207			3	
LQQQQRPEDAEDGAEGGGK	1	Unmodified	2011.9195	0.91952443	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	12.332	11.898	2;3	2.3691E-12	9490	160511_QHF_FH_JSI11i_1	143.64	129.38			0.99424	1.0058	12.699	9	1	Median	1.281	1.0461	4.6279	2	0	Median	0.83553	0.99908	16.527	3	1	Median	1.0135	0.99865	1.0078	2	0	Median	0.86858	0.90293	20.141	2	0	Median	2929700000	1525000000	1404700000	449050000	200740000	248310000	855220000	490810000	364410000	852520000	418310000	434210000	772930000	415150000	357780000	33608	2282	31796	207405;207406;207407;207408;207409;207410;207411;207412;207413	280209;280210;280211;280212;280213;280214;280215;280216;280217;280218;280219;280220;280221;280222;280223;280224;280225;280226;280227;280228	280212			20	
LQQSFPGIEVTVK	1	Unmodified	1444.7926	0.79257999	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			68.318	68.034	2	0.00066018	61607	160511_QHF_FH_JSI10i_1	84.507	43.784			0.54056	0.63384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54056	0.63384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27995000	19378000	8617000	0	0	0	27995000	19378000	8617000	0	0	0	0	0	0	33609	565	31797	207414	280229	280229			1	
LQQSHPLSATQIQVK	1	Unmodified	1676.921	0.9209684	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	37.232	36.714	2;3	6.6931E-08	31203	160511_QHF_FH_JSI12i_3	98.353	64.487			0.86744	0.85787	15.609	5	0	Median	0.90331	0.76186	NaN	1	0	Median	0.86744	1.0488	NaN	1	0	Median	0.88222	0.87094	21.227	2	0	Median	0.82752	0.85787	NaN	1	0	Median	378340000	204670000	173670000	39941000	19318000	20623000	49237000	27244000	21993000	155110000	80903000	74208000	134050000	77207000	56846000	33610	2470	31798	207415;207416;207417;207418;207419;207420	280230;280231;280232;280233	280233			4	
LQQSSYHK	1	Unmodified	989.49304	0.49304393	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							1	4	4	4	5.889	5.6219	2;3	8.9383E-05	3419	160511_QHF_FH_JSI12i_3	131.06	62.641			1.0679	0.9523	31.363	12	2	Plateau	1.1004	0.93795	NaN	1	0	Median	0.87234	1.0082	3.0118	3	0	Median	1.0594	0.97498	17.825	4	1	Linear	1.4549	1.5242	54.328	4	1	Linear	3553800000	1766700000	1787100000	156900000	68281000	88623000	406040000	216000000	190050000	1287400000	694590000	592850000	1703400000	787820000	915580000	33611	679	31799	207421;207422;207423;207424;207425;207426;207427;207428;207429;207430;207431;207432;207433	280234;280235;280236;280237;280238;280239;280240;280241;280242;280243;280244;280245;280246;280247;280248;280249	280247			16	
LQQTEAELR	0	Unmodified	1086.5669	0.56693715	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	20.322	18.9	2	5.2763E-06	16507	160511_QHF_FH_JSI12i_1	116.3	44.071			0.89268	1.0051	14.081	9	0	Median	1.3993	1.1722	12.214	2	0	Median	0.78255	0.93556	10.141	2	0	Median	0.86066	0.85318	3.9988	2	0	Median	0.99955	1.0551	11.172	3	0	Plateau	1229300000	616140000	613170000	256310000	103300000	153010000	381530000	213470000	168060000	257730000	138430000	119300000	333740000	160940000	172800000	33612	1283	31800	207434;207435;207436;207437;207438;207439;207440;207441;207442	280250;280251;280252;280253;280254;280255;280256;280257;280258;280259	280254			10	
LQQTEAELRK	1	Unmodified	1214.6619	0.66190017	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.23		10	4					2		3	3	6	4	15.565	14.028	2;3	7.0038E-06	11770	160511_QHF_FH_JSI9i_2	82.261	49.036			0.93693	0.92633	30.562	16	5	Median	0.78032	0.65365	15.421	3	0	Plateau	1.1206	1.3628	44.702	3	2	Median	1.047	1.0383	24.49	6	2	Median	0.90616	0.92633	11.115	4	1	Median	2540500000	1239900000	1300600000	294960000	163510000	131450000	387320000	168840000	218480000	1045200000	460630000	584620000	812950000	446890000	366050000	33613	1283	31801	207443;207444;207445;207446;207447;207448;207449;207450;207451;207452;207453;207454;207455;207456;207457;207458	280260;280261;280262;280263;280264;280265;280266;280267;280268;280269;280270;280271;280272;280273;280274;280275;280276;280277;280278;280279;280280	280267			21	
LQQTQAQVDEVVDIMR	0	Unmodified	1871.9411	0.9411115	2047	P63027	VAMP2	Vesicle-associated membrane protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	75.356	74.918	2	1.6654E-05	68261	160511_QHF_FH_JSI12i_1	116.84	74.095			0.95796	0.97013	6.5739	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94208	0.92607	NaN	1	0	Median	0.97411	1.0163	NaN	1	0	Median	83381000	42255000	41127000	0	0	0	0	0	0	45030000	23934000	21096000	38351000	18321000	20031000	33614	2047	31802	207459;207460	280281;280282;280283	280283			3	
LQQTQNQVDEVVDIMR	0	Unmodified	1914.9469	0.94692516	2717	Q15836	VAMP3	Vesicle-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								4	1	1	1	73.375	72.751	2	3.1797E-22	65785	160511_QHF_FH_JSI10i_1	180.97	143.54			1.0666	0.9378	5.2168	5	2	Median	1.1761	0.95403	5.5554	2	2	Median	0.79508	0.92857	NaN	1	0	Median	1.0666	1.0379	NaN	1	0	Median	0.89852	0.9378	NaN	1	0	Median	436830000	218070000	218760000	176240000	74621000	101620000	91434000	53169000	38264000	90061000	48135000	41926000	79094000	42147000	36947000	33615	2717	31803	207461;207462;207463;207464;207465;207466;207467	280284;280285;280286;280287;280288;280289;280290;280291;280292;280293;280294	280290			11	
LQQTYAALNSK	1	Unmodified	1235.651	0.65100113	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.91	4	4	2			2	1			4	3	3	3	30.335	26.892	2	1.2466E-05	25898	160511_QHF_FH_JSI11i_1	107.06	66.988			1.1869	1.1427	17.914	13	2	Median	1.2697	1.0195	24.127	4	1	Median	0.82219	1.0522	9.6196	3	1	Plateau	1.4431	1.4142	8.3493	3	0	Plateau	1.0928	1.1927	18.065	3	0	Median	3265400000	1718600000	1546800000	669180000	346140000	323030000	863820000	495310000	368510000	720950000	326340000	394620000	1011400000	550810000	460630000	33616	1600	31804	207468;207469;207470;207471;207472;207473;207474;207475;207476;207477;207478;207479;207480	280295;280296;280297;280298;280299;280300;280301;280302;280303;280304;280305;280306;280307;280308;280309;280310;280311;280312;280313;280314;280315	280295			20	
LQQVAEK	1	Unmodified	814.45487	0.45486751	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		9.0774	8.7136	2	0.01375	6206	160511_QHF_FH_JSI9i_1	69.198	10.217			0.60342	0.64938	162.1	3	3	Plateau	3.3119	2.7347	NaN	1	1	Median	0.13815	0.16137	NaN	1	1	Median	2.6356	2.6133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	354280000	171090000	183190000	112900000	35252000	77643000	106670000	83774000	22891000	134720000	52066000	82657000	0	0	0	33617	2728	31805	207481;207482;207483	280316;280317;280318	280318			3	
LQQVAEKYYGNK	2	Acetyl (K)	1481.7514	0.75144346	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.168	37.653	2	0.0013961	22236	160513_QHF_FH_JSI11Kac_4	81.338	51.865			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1832200	1832200	0	0	0	0	0	0	0	1832200	1832200	0	0	0	0	33618	2728	31806	207484	280319	280319	2651		1	
LQQVLQMESHIQSTSDR	0	Oxidation (M)	2014.9742	0.97420254	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	33.846	33.791	3	0.00015859	29457	160511_QHF_FH_JSI11i_3	61.477	49.835			1.0286	0.96122	9.3371	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.102	1.0268	NaN	1	0	Median	0.9601	0.8998	NaN	1	0	Median	82915000	45141000	37774000	0	0	0	0	0	0	50827000	26642000	24185000	32087000	18499000	13589000	33619	2585	31807	207485;207486	280320;280321	280320		2026	2	
LQQVLQMESHIQSTSDR	0	Unmodified	1998.9793	0.97928792	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.73		11	11					1	6	7	9	8	5	52.803	50.107	2;3	2.1799E-32	43503	160511_QHF_FH_JSI11i_2	147.18	95.962			0.72454	0.7111	149.22	19	19	Median	0.3048	0.26437	192.37	3	3	Median	0.72349	0.87166	137.14	8	8	Median	0.72454	0.7111	172.38	5	5	Median	1.8968	2.127	181.59	3	3	Median	4287800000	2108100000	2179700000	689570000	357380000	332200000	929810000	519490000	410320000	1624800000	773210000	851580000	1043600000	458030000	585580000	33620	2585	31807	207487;207488;207489;207490;207491;207492;207493;207494;207495;207496;207497;207498;207499;207500;207501;207502;207503;207504;207505;207506;207507;207508;207509;207510;207511;207512;207513;207514;207515	280322;280323;280324;280325;280326;280327;280328;280329;280330;280331;280332;280333;280334;280335;280336;280337;280338;280339;280340;280341;280342;280343;280344;280345;280346;280347;280348;280349;280350;280351;280352	280339			31	
LQQVPELK	1	Unmodified	953.55458	0.55458155	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.659	36.067	2	0.011304	32679	160511_QHF_FH_JSI12i_1	53.968	24.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33621	4818	31808	207516	280353	280353			1	
LQQYYIFIPSK	1	Unmodified	1398.7547	0.75473792	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	4.6		3					3	8	8	5	6	7	4	80.082	71.547	2;3	2.4748E-11	39889	160513_QHF_FH_JSI10Kac_6	157.95	130.2			0.91966	0.89392	16.102	19	1	Median	1.0383	0.86407	25.171	5	0	Median	0.75157	0.88475	8.0737	6	1	Median	1.1033	1.0332	15.661	5	0	Median	0.91914	0.89392	5.594	3	0	Plateau	2765800000	1360700000	1405100000	756040000	362090000	393940000	884400000	490730000	393670000	663260000	314970000	348290000	462140000	192940000	269210000	33622	4640	31809	207517;207518;207519;207520;207521;207522;207523;207524;207525;207526;207527;207528;207529;207530;207531;207532;207533;207534;207535;207536;207537;207538	280354;280355;280356;280357;280358;280359;280360;280361;280362;280363;280364;280365;280366;280367;280368;280369;280370;280371;280372;280373;280374;280375;280376;280377;280378;280379;280380;280381;280382;280383;280384;280385;280386;280387	280386			34	
LQREEEEAFASSQSSQGAQSLTFSK	1	Unmodified	2744.2889	0.28893098	5337	Q9UJ41	RABGEF1	Rab5 GDP/GTP exchange factor	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		52.754	52.754	3	1.8739E-09	46697	160511_QHF_FH_JSI11i_3	93.633	90.143			0.96818	0.89649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96818	0.89649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14651000	11933000	2718200	0	0	0	0	0	0	14651000	11933000	2718200	0	0	0	33623	5337	31810	207539	280388	280388			1	
LQRELEDATETADAMNR	0	Unmodified	1961.9113	0.91126793	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	42.573	42.121	3	2.1719E-11	37056	160511_QHF_FH_JSI10i_2	143.14	124.55			1.1285	1.0436	58.562	6	4	Median	1.1909	1.0277	NaN	1	0	Median	1.2623	1.519	NaN	1	0	Median	2.301	2.1118	88.836	3	3	Plateau	1.0694	1.0598	NaN	1	1	Median	529360000	254010000	275350000	97156000	51237000	45920000	146720000	81803000	64912000	242380000	99087000	143300000	43103000	21879000	21224000	33624	1436	31811	207540;207541;207542;207543;207544;207545	280389;280390;280391;280392;280393;280394;280395;280396	280395			8	
LQRELEDATETADAMNR	0	Oxidation (M)	1977.9062	0.90618255	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1		By MS/MS			2	0		1									1			30.96	30.021	3	0.01716	26308	160511_QHF_FH_JSI10i_2	39.91	29.853			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33625	1436	31811	207546	280397	280397		1095	1	
LQSDDILPLGK	1	Unmodified	1197.6605	0.66050319	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	4		1							2	1	1	1	55.359	54.611	2;3	0.00022445	57778	160511_QHF_FH_JSI12i_1	79.986	25.828			0.86365	0.83907	2.3705	5	0	Median	0.98135	0.8178	0.6122	2	0	Median	0.71168	0.85266	NaN	1	0	Median	0.86365	0.83907	NaN	1	0	Median	0.84378	0.86079	NaN	1	0	Median	332160000	174430000	157730000	110950000	59536000	51414000	64394000	32183000	32210000	75065000	40495000	34570000	81750000	42215000	39535000	33626	3221	31812	207547;207548;207549;207550;207551	280398;280399;280400;280401;280402;280403;280404;280405;280406	280399			9	
LQSEPESIRK	1	Unmodified	1185.6354	0.63535107	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.53		8	7					4	1	5	5	5	5	15.694	13.095	2;3	2.6641E-05	11016	160511_QHF_FH_JSI11i_3	93.667	49.898			1.1211	1.0897	18.459	20	0	Median	1.3002	1.1257	11.234	5	0	Median	0.89864	1.0914	24.019	5	0	Median	1.1397	1.0994	9.7001	5	0	Median	0.81903	0.84416	15.963	5	0	Median	7128100000	3475700000	3652400000	1133800000	523560000	610200000	1378000000	706930000	671030000	3091900000	1273000000	1818900000	1524500000	972230000	552270000	33627	930	31813	207552;207553;207554;207555;207556;207557;207558;207559;207560;207561;207562;207563;207564;207565;207566;207567;207568;207569;207570;207571	280407;280408;280409;280410;280411;280412;280413;280414;280415;280416;280417;280418;280419;280420;280421;280422;280423;280424;280425;280426;280427;280428;280429;280430;280431;280432;280433;280434;280435;280436;280437	280410			31	
LQSESTNNGK	1	Unmodified	1076.5098	0.5098162	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.0737	4.732	2	4.4347E-06	2695	160511_QHF_FH_JSI12i_1	118.18	47.265			1.2883	1.3215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2883	1.3215	NaN	1	1	Median	117290000	61755000	55534000	0	0	0	0	0	0	0	0	0	117290000	61755000	55534000	33628	1532	31814	207572	280438	280438			1	
LQSFFGGTVMGESGMK	1	Unmodified	1674.7746	0.77456344	1269	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.432	76.155	2	0.0022239	66141	160511_QHF_FH_JSI12i_3	64.65	44.992			0.54916	0.59016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54916	0.59016	NaN	1	1	Median	19368000	14631000	4737300	0	0	0	0	0	0	0	0	0	19368000	14631000	4737300	33629	1269	31815	207573	280439	280439			1	
LQSGVNTLQGFK	1	Unmodified	1290.6932	0.6932003	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.467	47.946	2	0.0028068	41319	160511_QHF_FH_JSI11i_2	56.432	38.12			1.3399	1.4207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3399	1.4207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38167000	18213000	19954000	0	0	0	0	0	0	38167000	18213000	19954000	0	0	0	33630	4903	31816	207574	280440	280440			1	
LQSIESLGTK	1	Unmodified	1074.5921	0.59208927	5826				yes	yes	0	0	0	0		By MS/MS			15	0								1			1			14.267	4.9278	3	0.054461	5115	160513_QHF_FH_JSI10Kac_5	11.731	0	+		0.88952	1.0624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88952	1.0624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18086000	9169400	8916700	0	0	0	18086000	9169400	8916700	0	0	0	0	0	0	33631	5826	31817	207575	280441	280441			1	
LQSIGTENTEENR	0	Unmodified	1489.7009	0.70086445	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	23.702	20.69	2	2.113E-15	17865	160511_QHF_FH_JSI10i_1	161.99	146.11			0.80104	0.83991	9.0055	6	0	Median	1.1412	0.92999	NaN	1	0	Median	0.77657	0.90788	7.3835	2	0	Median	0.80104	0.77795	3.5186	2	0	Median	0.77639	0.81867	NaN	1	0	Median	1212800000	657490000	555310000	307490000	143620000	163870000	244870000	134150000	110720000	337690000	193050000	144630000	322750000	186650000	136100000	33632	803	31818	207576;207577;207578;207579;207580;207581	280442;280443;280444;280445;280446;280447;280448;280449;280450;280451	280449			10	
LQSIGTENTEENRR	0	Unmodified	1645.802	0.80197548	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.34		7	6					4		5	5	5	2	17.888	15.244	2;3	1.1205E-14	13153	160511_QHF_FH_JSI10i_2	160.15	129.59			0.83573	0.93302	25.203	17	1	Median	1.4434	1.2375	18.693	5	1	Median	0.67873	0.82362	14.132	5	0	Median	0.76371	0.72053	10.422	5	0	Median	0.88675	1.0079	10.918	2	0	Median	2341000000	1172200000	1168800000	640250000	238830000	401420000	951530000	556130000	395400000	640220000	316220000	324010000	109030000	61010000	48023000	33633	803	31819	207582;207583;207584;207585;207586;207587;207588;207589;207590;207591;207592;207593;207594;207595;207596;207597;207598	280452;280453;280454;280455;280456;280457;280458;280459;280460;280461;280462;280463;280464;280465;280466;280467;280468;280469;280470;280471;280472;280473;280474;280475;280476;280477	280473			26	
LQSLDGPGAHK	1	Unmodified	1121.5829	0.58292157	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		14.719	14.719	3	0.0026327	11976	160511_QHF_FH_JSI11i_3	55.261	47.896			0.86235	0.79245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86235	0.79245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47058000	22822000	24237000	0	0	0	0	0	0	47058000	22822000	24237000	0	0	0	33634	3183	31820	207599	280478	280478			1	
LQSLEVGTDWDPK	1	Unmodified	1486.7304	0.73037367	4654	Q9H1B5	XYLT2	Xylosyltransferase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.368	38.911	2	0.0060855	35357	160511_QHF_FH_JSI12i_1	61.161	21.857			0.72686	0.72785	32.894	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5889	0.5768	NaN	1	1	Median	0.89713	0.91846	NaN	1	1	Median	70041000	32337000	37704000	0	0	0	0	0	0	41114000	22072000	19043000	28927000	10265000	18662000	33635	4654	31821	207600;207601;207602	280479;280480;280481	280480			3	
LQSLPFALTHLNLK	1	Unmodified	1593.9243	0.92426287	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	4	2	1	90.058	89.521	2;3	1.5505E-05	73503	160511_QHF_FH_JSI9i_3	117.08	115.25			0.92512	0.91992	40.311	8	2	Median	1.1799	0.94358	23.96	3	1	Plateau	0.59839	0.72246	33.664	2	1	Median	1.4914	1.4219	61.076	2	0	Median	0.87594	0.90115	NaN	1	0	Median	836460000	413960000	422500000	186200000	81089000	105110000	131020000	73301000	57717000	210850000	105710000	105140000	308390000	153850000	154540000	33636	2506	31822	207603;207604;207605;207606;207607;207608;207609;207610;207611;207612	280482;280483;280484;280485;280486;280487;280488;280489;280490;280491;280492;280493;280494;280495;280496;280497;280498;280499;280500	280490			19	
LQSLTENLTK	1	Unmodified	1145.6292	0.62920306	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	42.432	41.624	2	0.00033774	36584	160511_QHF_FH_JSI10i_2	77.662	40.104			0.85484	0.8507	25.291	8	0	Median	0.77548	0.65245	15.455	2	0	Median	0.70869	0.84333	30.365	2	0	Median	1.0514	1.0477	15.882	2	0	Median	0.86014	0.92525	25.451	2	0	Median	1175300000	658830000	516460000	206960000	116460000	90506000	279090000	180630000	98457000	404350000	217070000	187280000	284890000	144670000	140220000	33637	1085	31823	207613;207614;207615;207616;207617;207618;207619;207620	280501;280502;280503;280504;280505;280506;280507;280508;280509;280510	280509			10	
LQSPEFQSLFTEGLK	1	Unmodified	1722.8829	0.88285156	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.061	93.665	3	0.0040618	82250	160511_QHF_FH_JSI11i_2	50.04	37.885			0.86452	0.84212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86452	0.84212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8103000	3732400	4370600	0	0	0	0	0	0	8103000	3732400	4370600	0	0	0	33638	4204	31824	207621	280511	280511			1	
LQSQLLSLEK	1	Unmodified	1157.6656	0.66558856	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	56.615	55.812	2	0.00059875	48258	160511_QHF_FH_JSI11i_2	70.908	0			0.97887	0.99573	27.318	5	0	Median	1.2726	1.0795	NaN	1	0	Median	0.76141	0.92636	NaN	1	0	Median	0.97887	0.99573	NaN	1	0	Median	0.99293	1.1233	51.978	2	0	Median	1031700000	545730000	485990000	164220000	66499000	97721000	194830000	111230000	83594000	323630000	164590000	159040000	349050000	203410000	145630000	33639	1711	31825	207622;207623;207624;207625;207626	280512;280513;280514;280515;280516;280517;280518	280516			7	
LQSQMSGQQLVEQSHVVLSTLWEPHITQR	0	Unmodified	3358.7092	0.70920807	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.61	100.52	4	2.4786E-71	81556	160511_QHF_FH_JSI9i_3	216.8	206.28			1.0757	1.1179	7.6977	4	1	Median	1.3325	1.0762	NaN	1	0	Median	0.99679	1.1612	NaN	1	0	Median	1.0538	0.99072	NaN	1	0	Median	1.0981	1.1667	NaN	1	1	Median	581600000	281180000	300420000	178130000	72942000	105190000	324390000	167980000	156420000	58171000	32665000	25506000	20903000	7593200	13310000	33640	2346	31826	207627;207628;207629;207630	280519;280520;280521;280522	280521			4	
LQSQPTDTDGGR	0	Unmodified	1273.5899	0.58985744	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	10.566	7.612	2	7.6015E-11	6896	160511_QHF_FH_JSI11i_1	147.62	137.17			1.1037	1.0796	6.9656	8	2	Median	1.2308	1.0188	NaN	1	0	Median	0.88577	1.0354	2.903	2	0	Median	1.1223	1.0904	4.5416	2	0	Median	1.1402	1.2081	5.4909	3	2	Plateau	1166500000	545960000	620580000	195400000	89856000	105540000	231840000	123820000	108020000	228620000	98249000	130370000	510680000	234040000	276640000	33641	2902	31827	207631;207632;207633;207634;207635;207636;207637;207638	280523;280524;280525;280526;280527;280528;280529;280530;280531;280532;280533;280534;280535	280523			13	
LQSQPTDTDGGRLK	1	Unmodified	1514.7689	0.76888444	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	16.386	15.951	3	0.0016406	12830	160511_QHF_FH_JSI12i_3	55.335	33.28			0.97083	1.0147	42.972	4	2	Median	1.7372	1.5337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68681	0.64179	NaN	1	1	Median	0.97083	1.0147	41.714	2	0	Median	158520000	86332000	72192000	27982000	9400800	18581000	0	0	0	50481000	30539000	19942000	80061000	46392000	33669000	33642	2902	31828	207639;207640;207641;207642	280536;280537;280538;280539	280538			4	
LQSQVLQAMR	0	Unmodified	1172.6336	0.63357693	4433	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		44.461	43.683	2	7.9195E-05	36608	160511_QHF_FH_JSI10i_3	87.476	65.969			0.93702	0.99377	5.2013	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85182	1.031	NaN	1	0	Median	1.0307	0.95788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	183750000	92092000	91654000	0	0	0	85072000	40735000	44338000	98673000	51357000	47316000	0	0	0	33643	4433	31829	207643;207644	280540;280541	280541			2	
LQSSASSIHSLQQQLK	1	Unmodified	1753.9323	0.93226137	3437	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			44.567	43.021	3	0.0025825	35885	160511_QHF_FH_JSI10i_3	53.169	41.004			0.99607	1.1356	85.869	2	2	Median	NaN	NaN	NaN	0	0	Median	0.99607	1.1356	85.869	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28019000	13138000	14880000	0	0	0	28019000	13138000	14880000	0	0	0	0	0	0	33644	3437	31830	207645;207646	280542;280543	280543			2	
LQSSDGEIFEVDVEIAK	1	Unmodified	1877.9258	0.92583859	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	83.763	83.256	2	0.0090585	75845	160511_QHF_FH_JSI12i_1	52.576	36.322			1.0588	1.0546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0588	1.0546	NaN	1	1	Median	16251000	6251300	9999900	0	0	0	0	0	0	0	0	0	16251000	6251300	9999900	33645	2057	31831	207647	280544	280544			1	
LQSSEAEVR	0	Unmodified	1017.5091	0.50908792	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.516	11.386	2	0.039161	9066	160511_QHF_FH_JSI11i_1	46.39	21.758			0.63306	0.61602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63306	0.61602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	265420000	166310000	99106000	0	0	0	0	0	0	265420000	166310000	99106000	0	0	0	33646	5213	31832	207648	280545	280545			1	
LQSSNIFTVAK	1	Unmodified	1206.6608	0.66083754	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.23	1	5	2				2	4		3	6	2	3	59.486	53.115	2	0.00027473	28930	160513_QHF_FH_JSI11Kac_5	104.22	74.478			0.85507	0.91252	19.984	11	3	Median	0.93643	0.79511	20.031	2	1	Median	0.56979	0.67755	26.398	5	2	Linear	0.82468	0.82845	13.668	2	0	Median	0.7871	0.87124	15.812	2	0	Median	877570000	530410000	347160000	253040000	143310000	109730000	406080000	271330000	134750000	23885000	12321000	11563000	194560000	103450000	91113000	33647	2296	31833	207649;207650;207651;207652;207653;207654;207655;207656;207657;207658;207659;207660;207661;207662	280546;280547;280548;280549;280550;280551;280552;280553;280554;280555;280556	280553			11	
LQSSQEPEAPPPR	0	Unmodified	1434.7103	0.71030693	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			19.539	19.282	2	3.7597E-05	16589	160511_QHF_FH_JSI10i_1	80.245	59.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33648	5436	31834	207663	280557	280557			1	
LQSSQEPEAPPPRDVALLQGR	0	Unmodified	2287.1921	0.19205789	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							2	2	3		53.114	52.235	3	7.7679E-07	43598	160511_QHF_FH_JSI10i_3	82.586	74.398			0.9839	1.1033	27.028	7	2	Median	1.5941	1.3363	6.7557	2	1	Median	0.97364	1.1467	5.4562	2	0	Median	0.78509	0.7785	13.347	3	1	Median	NaN	NaN	NaN	0	0	Median	598050000	265220000	332820000	203670000	71208000	132470000	284250000	137220000	147020000	110130000	56792000	53334000	0	0	0	33649	5436	31835	207664;207665;207666;207667;207668;207669;207670	280558;280559;280560;280561;280562;280563;280564;280565;280566;280567	280561			10	
LQSTFVFEEIGR	0	Unmodified	1424.73	0.72997974	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.67	6.6		2							1			2	1	79.007	75.438	2	0.00070146	68087	160511_QHF_FH_JSI11i_2	80.014	65.335			0.98451	1.0294	17.511	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0004	1.0279	0.20441	2	2	Median	0.68772	0.75897	NaN	1	1	Median	162740000	83543000	79198000	0	0	0	0	0	0	148910000	74473000	74442000	13827000	9070600	4755900	33650	1747	31836	207671;207672;207673	280568;280569;280570	280568			3	
LQSTFVFEEIGRR	0	Unmodified	1580.8311	0.83109076	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	9.5	6.5			2						2	1	2		1	71.318	66.372	3	0.00010372	55035	160511_QHF_FH_JSI9i_3	70.563	57.731			0.82731	0.90147	16.638	4	0	Median	1.1728	0.95325	NaN	1	0	Median	0.82731	0.95036	15.369	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64826	0.71794	NaN	1	0	Median	277880000	140910000	136970000	111590000	45570000	66022000	155930000	88756000	67170000	0	0	0	10364000	6582700	3781600	33651	1747	31837	207674;207675;207676;207677	280571;280572;280573;280574	280573			4	
LQSTNFALAE	0	Unmodified	1092.5451	0.54513908	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.67	5.19	2				1						2	1		61.282	57.905	2	0.005827	52273	160511_QHF_FH_JSI10i_1	53.493	47.181			1.2533	1.3703	5.032	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.249	1.4384	1.7652	2	0	Median	1.3402	1.3219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	259550000	102830000	156710000	0	0	0	122910000	55234000	67673000	136640000	47599000	89040000	0	0	0	33652	4326	31838	207678;207679;207680	280575;280576;280577	280576			3	
LQSVLGK	1	Unmodified	743.45414	0.45413923	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				25.783	24.766	2	0.011748	21297	160511_QHF_FH_JSI9i_2	60.788	9.822			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33653	2441	31839	207681	280578	280578			1	
LQSVQALTEIQEFISFISK	1	Unmodified	2180.1729	0.17288557	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.46		8	7						8	6	5	7	5	103.19	100.22	2;3	4.8954E-177	53437	160513_QHF_FH_JSI9Kac_6	347.45	309.48			0.85244	0.86094	22.673	23	9	Median	0.90445	0.77917	17.046	6	1	Median	0.64934	0.76393	20.688	5	2	Median	0.96821	0.94249	33.206	7	4	Median	0.80155	0.86094	18.455	5	2	Median	2289500000	1264300000	1025200000	883460000	461920000	421530000	690910000	425900000	265010000	432010000	221270000	210740000	283110000	155220000	127890000	33654	2094	31840	207682;207683;207684;207685;207686;207687;207688;207689;207690;207691;207692;207693;207694;207695;207696;207697;207698;207699;207700;207701;207702;207703;207704	280579;280580;280581;280582;280583;280584;280585;280586;280587;280588;280589;280590;280591;280592;280593;280594;280595;280596;280597;280598;280599;280600;280601;280602;280603;280604;280605;280606;280607;280608;280609;280610;280611;280612	280603			34	
LQSWLYSSR	0	Unmodified	1138.5771	0.57710791	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			53.824	48.784	2	0.0036617	40779	160511_QHF_FH_JSI10i_3	59.35	26.995			0.87895	1.0223	16.057	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87895	1.0223	16.057	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81411000	39905000	41506000	0	0	0	81411000	39905000	41506000	0	0	0	0	0	0	33655	675	31841	207705;207706	280613;280614;280615	280613			3	
LQTASDESYKDPTNIQSK	2	Unmodified	2023.9698	0.96982867	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.444	31.841	3	5.0204E-07	28686	160511_QHF_FH_JSI12i_1	104.61	89.454			0.93178	0.9849	22.469	4	0	Median	0.89777	0.73387	NaN	1	0	Median	0.89397	1.0374	NaN	1	0	Median	0.96708	0.93506	NaN	1	0	Median	1.2099	1.2585	NaN	1	0	Median	420580000	194090000	226500000	91023000	41503000	49520000	121310000	65157000	56151000	105030000	46879000	58154000	103220000	40546000	62672000	33656	2470	31842	207707;207708;207709;207710	280616;280617;280618;280619;280620;280621;280622	280618			7	
LQTHDIIEVPTRLDK	1	Unmodified	1776.9734	0.9733979	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		57.608	56.581	4	5.3226E-05	50046	160511_QHF_FH_JSI11i_3	86.39	75.445			1.0289	1.0002	34.765	3	0	Plateau	0.61478	0.50603	NaN	1	0	Median	0.69557	0.80204	NaN	1	0	Median	1.0678	1.0002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174320000	83205000	91118000	23431000	11352000	12080000	45935000	27295000	18640000	104960000	44558000	60398000	0	0	0	33657	2302	31843	207711;207712;207713	280623;280624	280623			2	
LQTHIGLVHSK	1	Unmodified	1231.7037	0.70370541	5648	Q9Y546	LRRC42	Leucine-rich repeat-containing protein 42	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			26.087	24.794	3	0.02663	20438	160511_QHF_FH_JSI10i_3	26.627	22.863			1.2643	1.4174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2643	1.4174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22641000	11939000	10701000	0	0	0	22641000	11939000	10701000	0	0	0	0	0	0	33658	5648	31844	207714	280625	280625			1	
LQTINLSFNR	0	Unmodified	1204.6564	0.65642086	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0		By MS/MS		By MS/MS	11.3	5.91			1					1	1		1		2	69.468	62.648	2	0.0041567	54167	160511_QHF_FH_JSI12i_3	66.92	20.948			1.1309	1.174	19.596	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.69992	0.79423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.008	1.0783	12.03	2	1	Median	128300000	53891000	74408000	0	0	0	2013700	1122400	891260	0	0	0	126280000	52768000	73516000	33659	4803	31845	207715;207716;207717	280626;280627;280628	280626			3	
LQTLVSEQPNK	1	Unmodified	1255.6772	0.67721588	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		33.186	32.514	2	0.001198	28240	160511_QHF_FH_JSI9i_2	70.056	45.238			0.67514	0.73639	76.501	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0511	1.2648	NaN	1	1	Median	0.43365	0.42872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43915000	29427000	14489000	0	0	0	25730000	15423000	10307000	18186000	14003000	4182000	0	0	0	33660	3328	31846	207718;207719;207720;207721	280629;280630;280631;280632	280629			4	
LQTMKEELDFQK	2	Unmodified	1508.7545	0.75447993	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			7									3	4	47.06	46.922	2;3	3.494E-05	40034	160511_QHF_FH_JSI12i_3	121.02	96.991			0.66119	0.67296	87.43	7	7	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46515	0.4357	90.494	3	3	Plateau	1.2716	1.2832	95.387	4	4	Median	1373200000	736950000	636220000	0	0	0	0	0	0	300340000	181440000	118900000	1072800000	555510000	517320000	33661	791	31847	207722;207723;207724;207725;207726;207727;207728	280633;280634;280635;280636;280637;280638;280639	280637			7	
LQTMYEMETSGK	1	Unmodified	1416.6265	0.62650222	5699	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	43.358	41.976	2	0.0032985	35882	160511_QHF_FH_JSI12i_2	66.595	54.068			0.95576	1.0605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95576	1.0605	NaN	1	1	Median	15700000	9673300	6026800	0	0	0	0	0	0	0	0	0	15700000	9673300	6026800	33662	5699	31848	207729;207730;207731	280640;280641;280642	280640			3	
LQTNHVTMLLR	0	Unmodified	1324.7285	0.72853995	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			47.664	46.076	3	0.0051955	37737	160511_QHF_FH_JSI9i_3	41.48	32.526			0.66043	0.65049	9.1423	2	0	Median	0.8383	0.69393	NaN	1	0	Median	0.5203	0.60977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61113000	32403000	28710000	33123000	14634000	18489000	27989000	17769000	10221000	0	0	0	0	0	0	33663	426	31849	207732;207733	280643;280644	280644			2	
LQTNIEALK	1	Unmodified	1028.5866	0.58660996	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	43.816	43.338	2	0.0037608	38974	160511_QHF_FH_JSI11i_1	58.917	19.955			0.78274	0.7613	8.9889	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.67337	0.80338	NaN	1	0	Median	0.78274	0.75811	NaN	1	0	Median	0.89394	0.90433	NaN	1	0	Median	525430000	335980000	189450000	0	0	0	184340000	119050000	65295000	209890000	139390000	70505000	131200000	77548000	53649000	33664	5161	31850	207734;207735;207736;207737	280645;280646;280647	280645			3	
LQTPNTFPK	1	Unmodified	1044.5604	0.56039521	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.91	1	4	4				2	3		3	3	4	4	42.48	38.226	2	0.00019552	32728	160511_QHF_FH_JSI11i_2	95.502	59.622			0.73841	0.74716	19.067	14	1	Median	0.81948	0.69375	13.455	3	0	Median	0.56878	0.69984	7.9258	3	0	Median	0.75932	0.74716	10.665	4	0	Median	0.77795	0.83604	24.229	4	1	Median	2075200000	1325800000	749400000	361450000	217140000	144310000	322640000	220810000	101840000	588820000	382610000	206210000	802260000	505220000	297040000	33665	2586	31851	207738;207739;207740;207741;207742;207743;207744;207745;207746;207747;207748;207749;207750;207751	280648;280649;280650;280651;280652;280653;280654;280655;280656;280657;280658;280659;280660;280661;280662;280663;280664;280665;280666	280659			19	
LQTQASATVAIPK	1	Unmodified	1326.7507	0.75071518	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.116	43.45	2	8.7105E-05	38479	160511_QHF_FH_JSI9i_1	97.163	79.299			1.1286	1.0204	13.226	4	0	Median	1.2172	0.9997	NaN	1	0	Median	0.80224	0.93856	NaN	1	0	Median	1.0625	1.0416	NaN	1	0	Median	1.1987	1.2746	NaN	1	0	Median	796330000	373920000	422410000	108410000	45647000	62760000	249180000	124210000	124970000	186890000	89718000	97172000	251860000	114350000	137510000	33666	2147	31852	207752;207753;207754;207755	280667;280668;280669;280670;280671;280672	280671			6	
LQTQGLGTALK	1	Unmodified	1128.6503	0.65027285	4109	Q96HE7;Q86YB8	ERO1L;ERO1LB	ERO1-like protein alpha;ERO1-like protein beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	1	3	2	42.296	41.604	2	0.00036812	36683	160511_QHF_FH_JSI10i_2	89.679	48.451			0.98716	0.93466	35.169	7	1	Median	1.0514	0.89509	NaN	1	0	Median	0.76979	0.93466	NaN	1	0	Median	1.1839	1.2017	53.847	3	1	Plateau	1.0363	1.1104	1.9004	2	0	Median	959700000	469090000	490610000	145970000	69930000	76038000	140710000	82032000	58677000	408530000	200180000	208360000	264490000	116950000	147540000	33667	4109	31853	207756;207757;207758;207759;207760;207761;207762	280673;280674;280675;280676;280677;280678;280679;280680	280680			8	
LQTQVFK	1	Unmodified	862.49125	0.49125301	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.68	6.18	4	4	4				3	3	1	4	5	5	5	34.149	30.091	2	0.0043412	17242	160513_QHF_FH_JSI11Kac_5	97.798	41.288			0.96764	0.95797	15.172	19	0	Median	1.0515	0.8746	17.224	4	0	Median	0.75984	0.93533	9.6517	5	0	Median	1.2244	1.1934	8.4995	5	0	Median	0.89139	0.95797	13.888	5	0	Median	7783200000	3845600000	3937700000	1285000000	531500000	753500000	1803200000	906860000	896290000	2653300000	1324600000	1328700000	2041800000	1082700000	959180000	33668	1593	31854	207763;207764;207765;207766;207767;207768;207769;207770;207771;207772;207773;207774;207775;207776;207777;207778;207779;207780;207781	280681;280682;280683;280684;280685;280686;280687;280688;280689;280690;280691;280692;280693;280694;280695;280696;280697;280698;280699;280700;280701;280702;280703;280704;280705;280706;280707;280708;280709;280710;280711;280712	280707			32	
LQTSLANLHQK	1	Unmodified	1251.6935	0.69353465	5217	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				30.167	28.774	3	0.034684	23510	160511_QHF_FH_JSI9i_3	30.795	17.027			2.488	2.0196	NaN	1	1	Median	2.488	2.0196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26387000	8861200	17526000	26387000	8861200	17526000	0	0	0	0	0	0	0	0	0	33669	5217	31855	207782	280713	280713			1	
LQTSLTCNSMVLFDHVGCLK	1	Unmodified	2322.117	0.11704373	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		87.766	87.766	3	0.013756	78320	160511_QHF_FH_JSI11i_3	34.174	19.404			1.7098	1.6337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7098	1.6337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18343000	4901100	13442000	0	0	0	0	0	0	18343000	4901100	13442000	0	0	0	33670	999	31856	207783	280714	280714			1	
LQTSSVLVSGLR	0	Unmodified	1258.7245	0.72450043	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	1	2	57.702	57.116	2	0.0034939	50621	160511_QHF_FH_JSI11i_3	65.695	25.65			0.75636	0.71894	45.456	5	4	Median	NaN	NaN	NaN	0	0	Median	0.45386	0.5418	32.552	2	1	Median	0.75636	0.71894	NaN	1	1	Median	1.1975	1.2112	24.882	2	2	Median	457910000	255650000	202250000	0	0	0	124770000	81565000	43206000	129210000	69413000	59799000	203920000	104680000	99248000	33671	1208	31857	207784;207785;207786;207787;207788;207789	280715;280716;280717;280718;280719;280720	280715			6	
LQTTDNLLPMSPEEFDEVSR	0	Unmodified	2320.0893	0.089291877	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	91.803	91.445	2	3.2715E-05	83095	160511_QHF_FH_JSI10i_1	88.974	76.096			1.3875	1.3466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3875	1.3466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15727000	6112100	9615100	0	0	0	0	0	0	15727000	6112100	9615100	0	0	0	33672	1528	31858	207790;207791;207792	280721;280722;280723;280724	280724			4	
LQTVAEK	1	Unmodified	787.44397	0.44396847	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	11.995	10.522	2	0.013927	8576	160511_QHF_FH_JSI11i_1	67.032	16.066			0.88642	0.88152	19.474	7	1	Median	1.3952	1.1823	0.98579	2	0	Median	0.6641	0.79202	9.0549	2	1	Median	0.93391	0.91553	5.3538	2	0	Median	0.71223	0.74301	NaN	1	0	Median	2118200000	1094600000	1023500000	552840000	236590000	316250000	558620000	312080000	246540000	537340000	255560000	281780000	469360000	290400000	178970000	33673	2734	31859	207793;207794;207795;207796;207797;207798;207799	280725;280726;280727;280728;280729;280730;280731;280732;280733;280734	280726			10	
LQVDALIDTIKK	2	Unmodified	1355.8024	0.8024164	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	77.847	77.518	3	6.052E-06	67133	160511_QHF_FH_JSI12i_3	90.793	74.928			0.72137	0.80322	31.911	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.34847	0.42801	NaN	1	1	Median	0.68452	0.64232	NaN	1	1	Median	0.72137	0.80322	NaN	1	1	Median	111630000	58753000	52877000	0	0	0	9114600	7708900	1405700	31217000	15377000	15841000	71298000	35668000	35630000	33674	3858	31860	207800;207801;207802;207803	280735;280736;280737;280738	280738			4	
LQVEELLK	1	Unmodified	970.5699	0.56989727	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	65.757	64.835	2	0.023235	56520	160511_QHF_FH_JSI11i_2	43.218	4.2558			1.0147	1.1316	13.284	3	0	Plateau	1.0147	0.88978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.1494	NaN	1	0	Median	0.96284	1.0753	NaN	1	0	Median	77756000	37578000	40178000	17311000	7768900	9542400	0	0	0	31442000	14472000	16971000	29003000	15337000	13665000	33675	4749	31861	207804;207805;207806	280739;280740	280740			2	
LQVEEVHQLSR	0	Unmodified	1336.7099	0.709913	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5								2	3	4	35.286	34.834	2;3	5.5436E-05	30610	160511_QHF_FH_JSI10i_2	79.492	58.46			1.0149	1.0261	15.569	9	3	Median	NaN	NaN	NaN	0	0	Median	0.78305	0.94606	0.65958	2	1	Median	1.0457	1.0426	4.3559	3	0	Plateau	1.0023	0.98903	23.77	4	2	Median	1415100000	717100000	698020000	0	0	0	287380000	152740000	134650000	466570000	240950000	225620000	661160000	323420000	337750000	33676	4939	31862	207807;207808;207809;207810;207811;207812;207813;207814;207815	280741;280742;280743;280744;280745;280746;280747;280748	280744			8	
LQVELDNVTGLLSQSDSK	1	Unmodified	1945.0004	0.0004005156	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.836	8	2	3							3	5	2	3	93.476	93.04	2;3	4.5096E-16	84527	160511_QHF_FH_JSI12i_1	189.86	166.63			0.7346	0.85645	18.209	10	2	Linear	1.1608	0.94504	16.056	2	0	Median	0.81672	0.96002	26.157	4	2	Median	0.87323	0.84236	1.9025	2	0	Median	0.82076	0.85391	1.1712	2	0	Median	945020000	500230000	444790000	104200000	42201000	62000000	334640000	188330000	146310000	183540000	84800000	98740000	322640000	184900000	137740000	33677	1436	31863	207816;207817;207818;207819;207820;207821;207822;207823;207824;207825;207826;207827;207828	280749;280750;280751;280752;280753;280754;280755;280756;280757;280758;280759;280760;280761;280762;280763;280764;280765;280766;280767;280768;280769;280770;280771;280772;280773	280759			25	
LQVEPAVDTSGVQCYGPGIEGQGVFR	0	Unmodified	2762.3334	0.33337875	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.38	0.484	5	3										4	4	84.215	83.578	2;3	8.6165E-20	76304	160511_QHF_FH_JSI11i_1	163.51	150.67			1.1204	1.1377	17.243	6	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96805	0.9458	11.94	3	1	Median	1.1797	1.2078	11.501	3	2	Median	223400000	103200000	120200000	0	0	0	0	0	0	98315000	54990000	43324000	125090000	48209000	76880000	33678	1192	31864	207829;207830;207831;207832;207833;207834;207835;207836	280774;280775;280776;280777;280778;280779;280780	280775			7	
LQVEQEENR	0	Unmodified	1143.552	0.55201537	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.17	14.899	2	0.00087552	12646	160511_QHF_FH_JSI12i_1	83.948	51.338			1.0405	1.1235	22.608	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0405	1.2121	NaN	1	1	Median	1.1964	1.1235	NaN	1	1	Median	0.77218	0.79326	NaN	1	1	Median	191390000	77696000	113700000	0	0	0	68923000	30861000	38063000	64201000	21546000	42655000	58270000	25289000	32980000	33679	4653	31865	207837;207838;207839	280781;280782;280783	280782			3	
LQVLGTNSFVK	1	Unmodified	1204.6816	0.68157298	2504	Q14156	EFR3A	Protein EFR3 homolog A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.795	62.952	2	0.01171	55729	160511_QHF_FH_JSI10i_2	55.567	18.092			0.42678	0.50683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42678	0.50683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15505000	11013000	4492600	0	0	0	15505000	11013000	4492600	0	0	0	0	0	0	33680	2504	31866	207840	280784	280784			1	
LQVLLTYR	0	Unmodified	1004.6019	0.6018661	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	69.891	60.626	2	0.00057766	32823	160513_QHF_FH_JSI11Kac_6	110.31	80.125			1.1441	1.1351	16.266	5	0	Median	1.3164	1.1351	NaN	1	0	Median	0.92184	1.1086	NaN	1	0	Median	1.1441	1.0753	NaN	1	0	Median	1.254	1.3811	21.257	2	0	Median	545370000	246350000	299030000	107280000	40643000	66640000	145540000	72639000	72901000	147510000	73706000	73805000	145040000	59358000	85682000	33681	4715	31867	207841;207842;207843;207844;207845	280785;280786;280787;280788;280789	280785			5	
LQVLVGDVLK	1	Unmodified	1082.6699	0.66994566	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.916	74.673	2	0.00048182	64452	160511_QHF_FH_JSI12i_2	73.233	14.316			0.93469	1.0323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93469	1.0323	NaN	1	0	Median	33743000	18592000	15151000	0	0	0	0	0	0	0	0	0	33743000	18592000	15151000	33682	5446	31868	207846	280790	280790			1	
LQVMANSR	0	Unmodified	917.47529	0.47528537	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							2	2		1	20.596	19.768	2	0.0021249	16166	160511_QHF_FH_JSI12i_3	82.452	34.279			0.77494	0.7957	26.344	5	0	Median	1.0501	0.87385	39.5	2	0	Median	0.59537	0.70199	17.722	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96877	0.98549	NaN	1	0	Median	767050000	390100000	376950000	238790000	119380000	119410000	330300000	172720000	157570000	0	0	0	197960000	97994000	99964000	33683	2614	31869	207847;207848;207849;207850;207851	280791;280792;280793;280794;280795	280795			5	
LQVQEQRK	1	Unmodified	1027.5774	0.57744226	5188	Q9P0T7;Q9NQ34	TMEM9;TMEM9B	Transmembrane protein 9;Transmembrane protein 9B	yes	no	0	0	0	1		By MS/MS			3	0			1								1			8.3326	7.782	2	0.042543	5668	160511_QHF_FH_JSI10i_3	54.549	7.4824			2.7484	3.2354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7484	3.2354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16003000	5374000	10629000	0	0	0	16003000	5374000	10629000	0	0	0	0	0	0	33684	5188	31870	207852	280796	280796			1	
LQVQNGPIGHR	0	Unmodified	1217.6629	0.66290322	1891	P57105	SYNJ2BP	Synaptojanin-2-binding protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				22.943	21.646	3	2.0799E-05	17479	160511_QHF_FH_JSI9i_3	89.171	81.604			1.1536	0.91666	NaN	1	0	Median	1.1536	0.91666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50454000	25794000	24660000	50454000	25794000	24660000	0	0	0	0	0	0	0	0	0	33685	1891	31871	207853	280797;280798	280798			2	
LQVSQQEDITK	1	Unmodified	1287.667	0.66704513	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.793	31.191	2	1.0142E-05	27301	160511_QHF_FH_JSI9i_1	110.39	79.158			0.79118	0.78317	11.217	4	4	Median	0.92577	0.74827	NaN	1	1	Median	0.67023	0.81969	NaN	1	1	Median	0.93306	0.92071	NaN	1	1	Median	0.67615	0.71379	NaN	1	1	Median	901510000	524420000	377100000	175570000	90929000	84640000	278430000	161820000	116620000	232250000	141810000	90435000	215270000	129860000	85405000	33686	1317	31872	207854;207855;207856;207857	280799;280800;280801;280802	280802			4	
LQVTEHLPEK	1	Unmodified	1192.6452	0.64518747	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			34.817	33.862	3	0.015777	29657	160511_QHF_FH_JSI10i_2	38.634	20.77			0.38864	0.47869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38864	0.47869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70992000	53574000	17417000	0	0	0	70992000	53574000	17417000	0	0	0	0	0	0	33687	4907	31873	207858	280803	280803			1	
LQVTMPGIK	1	Unmodified	985.56304	0.56303775	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	2	2	3	59.758	58.94	2	0.00023031	50479	160511_QHF_FH_JSI12i_2	84.615	48.735			1.0391	0.97776	46.227	8	1	Median	1.1265	0.94596	4.6267	2	1	Median	0.81549	0.97809	NaN	1	0	Median	0.99389	0.96701	17.067	2	0	Median	1.0103	1.1278	84.464	3	0	Median	923280000	492840000	430440000	158610000	74413000	84195000	150380000	87114000	63265000	345680000	185310000	160370000	268620000	146000000	122610000	33688	2286	31874	207859;207860;207861;207862;207863;207864;207865;207866;207867	280804;280805;280806;280807;280808;280809;280810;280811;280812;280813;280814	280805			11	
LQVTNVLSQPLTQATVK	1	Unmodified	1839.0466	0.046562847	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.13	8	5	4					1		3	4	6	5	80.811	79.704	2;3	2.9545E-12	71518	160511_QHF_FH_JSI11i_3	178.67	155.44			0.79335	0.86387	59.544	17	16	Median	0.87906	0.74599	13.899	3	3	Plateau	0.69372	0.8151	3.7403	3	3	Plateau	0.97644	0.9786	67.111	6	5	Median	0.79335	0.88792	88.501	5	5	Median	2041600000	1410300000	631300000	140860000	74104000	66761000	265870000	138580000	127290000	697700000	494950000	202750000	937210000	702710000	234500000	33689	817	31875	207868;207869;207870;207871;207872;207873;207874;207875;207876;207877;207878;207879;207880;207881;207882;207883;207884;207885	280815;280816;280817;280818;280819;280820;280821;280822;280823;280824;280825;280826;280827;280828;280829;280830;280831;280832;280833	280816			19	
LQVVDQPLPVR	0	Unmodified	1262.7347	0.73467118	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.06	8	4	4				3	1		5	5	5	5	61.692	58.81	2;3	3.2849E-19	52009	160511_QHF_FH_JSI10i_2	168.83	115.66			0.92869	1.0323	17.346	19	4	Median	1.3477	1.116	30.579	5	2	Median	0.90868	1.0809	2.9403	4	1	Median	0.92405	0.93927	12.985	5	0	Median	0.94045	0.958	12.613	5	1	Median	7131200000	3501600000	3629600000	1413500000	599970000	813480000	1602300000	841560000	760770000	2322800000	1167500000	1155300000	1792600000	892480000	900100000	33690	1650	31876	207886;207887;207888;207889;207890;207891;207892;207893;207894;207895;207896;207897;207898;207899;207900;207901;207902;207903;207904;207905	280834;280835;280836;280837;280838;280839;280840;280841;280842;280843;280844;280845;280846;280847;280848;280849;280850;280851;280852;280853;280854;280855;280856;280857;280858;280859;280860;280861;280862;280863;280864	280864			31	
LQVVLEHMPVGPDAILR	0	Unmodified	1886.0448	0.044788708	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	3	4	90.483	90.123	2;3	4.8103E-08	80335	160511_QHF_FH_JSI11i_3	121.27	103.78			0.63875	0.60246	46.406	8	5	Median	0.64415	0.56079	NaN	1	0	Median	0.30988	0.37931	NaN	1	0	Median	0.51887	0.49656	48.521	3	3	Plateau	1.0096	1.1016	43.743	3	2	Median	269100000	163730000	105370000	19212000	12650000	6561400	21260000	16988000	4271600	99473000	61844000	37629000	129160000	72247000	56912000	33691	1585	31877	207906;207907;207908;207909;207910;207911;207912;207913;207914;207915	280865;280866;280867;280868;280869;280870;280871;280872;280873;280874;280875;280876	280865			12	
LQVVLNESNADTYAGRPLPSK	1	Unmodified	2271.1859	0.18590988	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		60.905	59.93	3	4.4762E-13	53310	160511_QHF_FH_JSI11i_3	121.26	90.832			0.95953	0.87944	10.445	5	2	Median	1.1107	0.94422	14.06	2	1	Median	0.76132	0.90948	14.239	2	1	Median	0.95953	0.87944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	210760000	111060000	99700000	61861000	31823000	30038000	95673000	58762000	36911000	53229000	20477000	32752000	0	0	0	33692	28	31878	207916;207917;207918;207919;207920	280877;280878;280879;280880;280881;280882;280883;280884;280885;280886;280887;280888;280889	280880			13	
LQVWDTAGQER	0	Unmodified	1301.6364	0.6364137	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	44.44	43.659	2	6.4514E-05	37241	160511_QHF_FH_JSI12i_2	93.096	45.493			1.1093	1.0606	33.656	6	1	Median	1.1648	0.9966	NaN	1	0	Median	0.97704	1.167	16.398	2	1	Median	1.6209	1.5965	54.949	2	0	Median	0.88097	0.97979	NaN	1	0	Median	863060000	448310000	414750000	137440000	69830000	67614000	219340000	124930000	94414000	294300000	133430000	160870000	211970000	120120000	91849000	33693	1730	31879	207921;207922;207923;207924;207925;207926	280890;280891;280892;280893;280894;280895;280896	280891			7	
LQWDLGLGHLPR	0	Unmodified	1403.7674	0.76736829	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	81.573	80.871	3	3.1671E-06	72097	160511_QHF_FH_JSI11i_3	105.65	97.139			1.0138	1.0487	33.902	5	1	Median	1.4112	1.1647	NaN	1	0	Median	0.6265	0.72941	51.35	2	1	Median	1.1269	1.0663	NaN	1	0	Median	1.0138	1.0216	NaN	1	0	Median	446090000	219730000	226360000	32813000	10896000	21917000	76475000	41989000	34485000	164220000	72202000	92017000	172580000	94642000	77942000	33694	2904	31880	207927;207928;207929;207930;207931	280897;280898;280899;280900;280901;280902;280903	280898			7	
LQWFCDR	0	Unmodified	1023.4596	0.45963531	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	53.139	52.297	2	0.0084038	43683	160511_QHF_FH_JSI10i_3	83.614	55.102			1.0734	1.1574	21.378	4	0	Median	1.6669	1.3491	NaN	1	0	Median	0.9226	1.0421	NaN	1	0	Median	0.88321	0.84636	NaN	1	0	Median	1.2489	1.2856	NaN	1	0	Median	741140000	399700000	341440000	36665000	13976000	22689000	130010000	69409000	60603000	299800000	165240000	134560000	274670000	151080000	123590000	33695	1544	31881	207932;207933;207934;207935	280904;280905;280906;280907	280906			4	
LQWFEQQAK	1	Unmodified	1176.5928	0.59275797	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.591	50.355	2	0.00012759	43147	160511_QHF_FH_JSI12i_3	91.318	69.187			1.1288	1.1335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1288	1.1335	NaN	1	0	Median	56661000	27606000	29055000	0	0	0	0	0	0	0	0	0	56661000	27606000	29055000	33696	3947	31882	207936	280908	280908			1	
LQWLHQQELSEMK	1	Unmodified	1668.8294	0.8293762	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	58.614	58.352	3	2.8544E-05	50190	160511_QHF_FH_JSI12i_3	87.989	81.107			0.77676	0.79116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77676	0.79116	NaN	1	0	Median	100860000	64487000	36372000	0	0	0	0	0	0	0	0	0	100860000	64487000	36372000	33697	5410	31883	207937	280909;280910	280910			2	
LQWQSTLGHCVLK	1	Unmodified	1568.8133	0.81333221	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	60.583	59.757	3	5.8799E-08	51322	160511_QHF_FH_JSI12i_3	137.95	122.19			0.98912	0.9749	14.831	4	0	Median	1.0711	0.87308	NaN	1	0	Median	0.91345	1.0886	NaN	1	0	Median	0.88278	0.84495	NaN	1	0	Median	1.112	1.1276	NaN	1	0	Median	438660000	226600000	212060000	37942000	15734000	22207000	92619000	46345000	46274000	167420000	91575000	75844000	140680000	72948000	67736000	33698	2457	31884	207938;207939;207940;207941	280911;280912;280913;280914;280915;280916;280917;280918	280917			8	
LQWQTTLGHAVLK	1	Unmodified	1493.8354	0.83544786	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	2	4	3	4	67.623	64.481	2;3	5.8516E-11	53100	160511_QHF_FH_JSI9i_3	134.68	124.36			0.92842	0.9264	28.494	13	6	Median	1.224	0.9996	4.6467	2	0	Median	0.92614	1.0598	20.664	4	0	Median	1.14	1.0733	44.945	3	2	Plateau	0.73836	0.73658	22.365	4	4	Median	6137600000	3557600000	2580000000	761330000	414620000	346710000	1033600000	579110000	454520000	1191900000	636670000	555250000	3150700000	1927200000	1223500000	33699	2456	31885	207942;207943;207944;207945;207946;207947;207948;207949;207950;207951;207952;207953;207954	280919;280920;280921;280922;280923;280924;280925;280926;280927;280928;280929;280930;280931;280932;280933;280934;280935;280936;280937	280930			18	
LQYAVPIISQQGEVAGR	0	Unmodified	1827.9843	0.98429694	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.034	72.408	2	0.0078585	63490	160511_QHF_FH_JSI11i_2	46.592	29.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33700	4659	31886	207955	280938	280938			1	
LQYAVSGLEPLAWSEDHR	0	Unmodified	2070.0171	0.017053633	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	81.241	80.959	3	2.2691E-05	70345	160511_QHF_FH_JSI12i_3	76.713	62.459			1.8628	1.9159	35.466	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5672	1.5241	46.549	2	0	Median	1.8628	1.9159	NaN	1	0	Median	160800000	73030000	87767000	0	0	0	0	0	0	119620000	52510000	67112000	41175000	20521000	20655000	33701	5376	31887	207956;207957;207958;207959	280939;280940;280941;280942;280943	280943			5	
LQYEGIFIK	1	Unmodified	1109.6121	0.61209643	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	71.161	68.348	2	0.00052067	60501	160511_QHF_FH_JSI9i_2	89.355	59.17			0.96461	0.98734	8.9869	5	0	Median	1.2336	1.0478	16.447	2	0	Median	0.80565	0.98734	NaN	1	0	Median	0.95867	0.97099	NaN	1	0	Median	0.96461	1.0392	NaN	1	0	Median	957770000	498830000	458940000	203340000	90740000	112600000	223660000	124980000	98679000	295920000	163290000	132630000	234850000	119820000	115030000	33702	2676	31888	207960;207961;207962;207963;207964	280944;280945;280946;280947;280948;280949;280950;280951;280952	280947			9	
LQYFMEQFYGIIR	0	Unmodified	1706.849	0.84904901	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	5.4		2							9	3	2	3	3	94.151	87.246	2;3	1.4225E-50	47058	160513_QHF_FH_JSI11Kac_6	240.08	196.8			1.1917	1.1232	34.118	11	4	Median	1.2264	1.0424	34.023	3	2	Median	0.52854	0.62806	10.26	2	0	Median	1.3486	1.261	23.06	3	1	Median	1.034	1.0783	9.2058	3	1	Plateau	4926600000	2408000000	2518600000	830510000	395760000	434750000	1966400000	1116300000	850020000	1057700000	453320000	604400000	1072000000	442540000	629450000	33703	2094	31889	207965;207966;207967;207968;207969;207970;207971;207972;207973;207974;207975	280953;280954;280955;280956;280957;280958;280959;280960;280961;280962;280963;280964;280965;280966;280967	280955			15	
LQYFMEQFYGIIR	0	Oxidation (M)	1722.844	0.84396364	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	85.46	76.433	2	1.1719E-12	40735	160513_QHF_FH_JSI12Kac_6	129.84	105.49			1.2541	1.1899	9.2509	2	0	Median	1.4858	1.2704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0585	1.1146	NaN	1	0	Median	174170000	76315000	97853000	100160000	37881000	62278000	0	0	0	0	0	0	74009000	38434000	35575000	33704	2094	31889	207976;207977	280968;280969;280970;280971	280971		1769	4	
LQYHAGLASGLLNQQSLK	1	Unmodified	1940.048	0.047959831	3099	Q6P2C8	MED27	Mediator of RNA polymerase II transcription subunit 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			65.679	64.182	3	0.00010342	52613	160511_QHF_FH_JSI9i_3	79.676	69.208			0.88739	0.88683	9.8285	2	2	Median	1.0021	0.82729	NaN	1	1	Median	0.78584	0.95065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154040000	78986000	75055000	69316000	34053000	35263000	84726000	44933000	39793000	0	0	0	0	0	0	33705	3099	31890	207978;207979;207980	280972;280973;280974	280973			3	
LQYIITNVLK	1	Unmodified	1203.7227	0.72270951	3437	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			81.383	70.994	2	0.048462	35342	160513_QHF_FH_JSI10Kac_5	38.086	23.879			0.47775	0.52924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47775	0.52924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1149000	686320	462730	0	0	0	1149000	686320	462730	0	0	0	0	0	0	33706	3437	31891	207981	280975	280975			1	
LQYMMVMVGYPDFLLKPDAVDK	2	Unmodified	2572.278	0.27796105	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.512	87.118	3	5.2535E-89	48913	160513_QHF_FH_JSI11Kac_6	222.93	187.54			1.2744	1.1753	12.625	4	1	Median	1.252	1.0878	NaN	1	0	Median	0.87086	1.0425	NaN	1	0	Median	1.3291	1.2699	NaN	1	0	Median	1.2972	1.3616	NaN	1	1	Median	1448900000	653530000	795370000	252370000	106370000	146000000	522890000	298690000	224200000	467770000	184230000	283540000	205870000	64239000	141630000	33707	714	31892	207982;207983;207984;207985	280976;280977;280978;280979;280980;280981	280976			6	
LQYMMVMVGYPDFLLKPDAVDK	2	Oxidation (M)	2588.2729	0.27287567	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	1	1			By MS/MS		16	0									1			1		92.446	83.074	3	0.0023529	46708	160513_QHF_FH_JSI11Kac_6	80.98	67.659			0.61737	0.60494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61737	0.60494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41870000	21000000	20870000	0	0	0	0	0	0	41870000	21000000	20870000	0	0	0	33708	714	31892	207986	280982	280982		248	1	
LQYWSSSKDQEPVLLQSQK	2	Acetyl (K)	2305.159	0.15902642	5783				yes	yes	1	0	0	1	By MS/MS			By MS/MS	16	0									3	1			2	99.48	90.133	3	0.026788	49590	160513_QHF_FH_JSI12Kac_6	32.55	13.765	+		1.1003	1.1585	7.1538	3	0	Plateau	1.2236	1.0235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1003	1.1585	0	2	0	Median	512280000	255790000	256500000	136120000	62719000	73402000	0	0	0	0	0	0	376160000	193070000	183100000	33709	5783	31893	207987;207988;207989	280983;280984	280983	3558		2	
LQYYVPENFWK	1	Unmodified	1485.7293	0.72925145	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	85.197	84.135	2	0.000509	72730	160511_QHF_FH_JSI12i_2	85.807	61.464			1.2179	1.341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2179	1.341	NaN	1	1	Median	21868000	12151000	9717300	0	0	0	0	0	0	0	0	0	21868000	12151000	9717300	33710	5468	31894	207990;207991	280985;280986	280985			2	
LQYYVPR	0	Unmodified	937.50215	0.50215205	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				39.554	38.506	2	0.029706	33624	160511_QHF_FH_JSI9i_2	54.525	22.055			0.90985	0.78139	NaN	1	1	Median	0.90985	0.78139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96693000	48486000	48207000	96693000	48486000	48207000	0	0	0	0	0	0	0	0	0	33711	3921	31895	207992	280987	280987			1	
LRAAEQYTPK	1	Unmodified	1175.6299	0.62987176	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			17.825	16.707	3	9.6694E-05	13360	160511_QHF_FH_JSI9i_3	81.017	66.81			1.218	1.1746	10.716	2	0	Median	1.3411	1.0889	NaN	1	0	Median	1.1062	1.2671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295720000	129490000	166230000	184100000	79971000	104130000	111620000	49518000	62100000	0	0	0	0	0	0	33712	1650	31896	207993;207994	280988;280989;280990;280991	280990			4	
LRAEIDNVK	1	Unmodified	1056.5928	0.59275797	57	CON__P13647;P13647	KRT5	Keratin, type II cytoskeletal 5	yes	no	0	0	0	1	By MS/MS				3	0			1							1				22.045	20.775	3	0.023109	16573	160511_QHF_FH_JSI9i_3	29.473	0		+	1.1534	0.9276	NaN	1	0	Median	1.1534	0.9276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2090200000	947910000	1142300000	2090200000	947910000	1142300000	0	0	0	0	0	0	0	0	0	33713	57	31897	207995	280992	280992			1	
LRAELDEVNK	1	Unmodified	1185.6354	0.63535107	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	27.348	27.335	2;3	0.00017512	22828	160511_QHF_FH_JSI12i_3	87.363	61.977			0.86061	0.89085	16.533	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86484	0.81777	22.313	2	1	Median	0.86061	0.89085	NaN	1	1	Median	525230000	289130000	236100000	0	0	0	0	0	0	411670000	221890000	189780000	113560000	67244000	46318000	33714	2207	31898	207996;207997;207998	280993;280994;280995	280995			3	
LRAEPDHMVLGK	1	Unmodified	1364.7235	0.72345457	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	4	3	2	32.356	31.503	2;3;4	1.013E-06	25729	160511_QHF_FH_JSI9i_3	117.98	106.76			1.0974	1.009	40.556	10	1	Median	1.3405	1.0946	18.065	3	0	Median	0.80638	0.9333	31.968	3	0	Plateau	0.73655	0.67598	75.805	3	1	Median	0.94443	0.96711	NaN	1	0	Median	2085300000	977950000	1107400000	700640000	267980000	432660000	695620000	340280000	355340000	622300000	328350000	293960000	66737000	41343000	25394000	33715	1520	31899	207999;208000;208001;208002;208003;208004;208005;208006;208007;208008;208009;208010	280996;280997;280998;280999;281000;281001;281002;281003;281004;281005;281006;281007;281008;281009;281010;281011;281012;281013;281014;281015	281012			20	
LRAEPDHMVLGK	1	Oxidation (M)	1380.7184	0.71836919	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	1	By MS/MS	By matching			3	0			2							1	1			21.624	20.387	3	0.008661	16309	160511_QHF_FH_JSI9i_3	49.423	43.19			0.86372	0.82593	3.6173	2	0	Median	1.0086	0.80507	NaN	1	0	Median	0.73968	0.84733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95868000	41708000	54160000	48920000	18758000	30162000	46947000	22949000	23998000	0	0	0	0	0	0	33716	1520	31899	208011;208012	281016;281017	281016		1198	2	
LRAESDFVK	1	Unmodified	1063.5662	0.56620887	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		24.169	24.169	2	0.058001	20534	160511_QHF_FH_JSI11i_3	71.349	44.747			1.0233	0.94284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0233	0.94284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154750000	67072000	87682000	0	0	0	0	0	0	154750000	67072000	87682000	0	0	0	33717	2561	31900	208013	281018	281018			1	
LRAETEQGEQQR	0	Unmodified	1443.7066	0.70661853	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.2	0.4		4	1							2	3			7.5411	7.0794	2;3	0.00060506	4885	160511_QHF_FH_JSI9i_2	91.937	70.565			0.85471	1.0804	17.226	5	0	Median	1.4085	1.1999	14.489	2	0	Median	0.72136	0.88198	11.805	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	313650000	159760000	153900000	139680000	60551000	79129000	173970000	99205000	74768000	0	0	0	0	0	0	33718	2636	31901	208014;208015;208016;208017;208018	281019;281020;281021;281022;281023;281024;281025	281021			6	
LRAPDLEYLFEK	1	Unmodified	1492.7926	0.79257999	5087	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		86.241	85.451	2;3	1.6471E-05	71473	160511_QHF_FH_JSI10i_3	99.011	83.623			0.9326	0.89655	19.862	6	0	Median	1.2944	1.0628	39.095	2	0	Median	0.77453	0.89655	0.18877	2	0	Median	0.9326	0.88106	3.8122	2	0	Median	NaN	NaN	NaN	0	0	Median	553670000	279040000	274640000	89559000	44058000	45501000	213910000	106670000	107240000	250210000	128300000	121900000	0	0	0	33719	5087	31902	208019;208020;208021;208022;208023;208024	281026;281027;281028;281029;281030;281031;281032	281031			7	
LRDADPILR	0	Unmodified	1067.6087	0.60874239	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		2	6							4	1	2	1	28.61	27.834	2;3	4.1205E-05	23775	160511_QHF_FH_JSI11i_3	113.62	63.015			0.94469	0.9946	24.684	8	3	Median	1.405	1.1564	34.021	4	3	Median	0.90812	1.0347	NaN	1	0	Median	0.93633	0.90729	7.4012	2	0	Median	0.86583	0.8655	NaN	1	0	Median	2151100000	1011900000	1139200000	1370100000	590830000	779320000	492520000	278700000	213820000	235150000	116600000	118550000	53316000	25772000	27544000	33720	1372	31903	208025;208026;208027;208028;208029;208030;208031;208032	281033;281034;281035;281036;281037;281038;281039	281033			7	
LRDCYASVFK	1	Unmodified	1257.6176	0.61759251	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.703	38.703	3	0.013662	34000	160511_QHF_FH_JSI11i_3	39.179	27.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33721	4951	31904	208033	281040	281040			1	
LRDDFEK	1	Unmodified	921.4556	0.45559579	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								1	2	1	15.019	15.051	2;3	0.020093	12608	160511_QHF_FH_JSI10i_2	38.776	15.252			2.716	2.6937	146.9	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9959	0.95326	NaN	1	0	Median	7.4072	7.6116	NaN	1	0	Median	916330000	389730000	526610000	0	0	0	0	0	0	644980000	357840000	287140000	271350000	31889000	239460000	33722	5542	31905	208034;208035;208036;208037	281041;281042;281043	281043			3	
LRDEINLAK	1	Unmodified	1070.6084	0.60840804	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	28.881	28.523	2;3	0.0007007	24519	160511_QHF_FH_JSI11i_3	68.893	38.329			1.4934	1.5407	127.51	4	2	Median	NaN	NaN	NaN	0	0	Median	2.9629	3.4039	NaN	1	1	Median	0.75276	0.69739	NaN	1	0	Median	2.0463	2.0752	187.95	2	1	Median	604300000	138190000	466110000	0	0	0	126280000	29340000	96937000	44505000	25906000	18598000	433520000	82941000	350580000	33723	2446	31906	208038;208039;208040;208041;208042	281044;281045;281046;281047	281045			4	
LRDFVLVK	1	Unmodified	988.60695	0.60695147	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	4.89		1	9						2	4	4	2	2	48.622	46.359	2;3	0.00047731	39023	160511_QHF_FH_JSI10i_3	93.649	77.446			0.83109	0.81159	18.702	12	1	Median	0.99604	0.79348	24.78	4	1	Median	0.77255	0.89828	18.754	4	0	Median	0.83109	0.78388	5.833	2	0	Median	0.84113	0.88181	25.831	2	0	Median	4013600000	2027000000	1986600000	1285900000	667520000	618360000	1312400000	701480000	610940000	1153600000	505880000	647750000	261700000	152160000	109540000	33724	220	31907	208043;208044;208045;208046;208047;208048;208049;208050;208051;208052;208053;208054	281048;281049;281050;281051;281052;281053;281054;281055;281056;281057;281058;281059;281060;281061;281062;281063;281064;281065;281066;281067;281068;281069	281056			22	
LRDLEDSLAR	0	Unmodified	1186.6306	0.63060004	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.26		7	5					2	4	4	5	6	3	38.904	34.99	2;3	4.4468E-18	30700	160511_QHF_FH_JSI9i_2	157.66	89.682			0.89461	0.91459	24.926	17	1	Median	1.2496	1.0594	19.739	4	0	Median	0.77928	0.89611	7.886	5	0	Median	0.92552	0.9139	16.664	5	0	Median	0.90782	0.91459	48.665	3	1	Plateau	3839700000	1898200000	1941500000	1559800000	705920000	853910000	1535300000	840300000	694980000	632700000	286640000	346060000	111900000	65301000	46597000	33725	791	31908	208055;208056;208057;208058;208059;208060;208061;208062;208063;208064;208065;208066;208067;208068;208069;208070;208071;208072	281070;281071;281072;281073;281074;281075;281076;281077;281078;281079;281080;281081;281082;281083;281084;281085;281086;281087;281088;281089;281090;281091;281092;281093;281094;281095;281096	281083			27	
LRDLHPDLEGQLK	1	Unmodified	1532.8311	0.83109076	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		43.988	42.73	2;3;4	2.3538E-05	36826	160511_QHF_FH_JSI11i_3	102.73	89.011			1.0444	0.98189	21.5	4	1	Median	1.0479	0.83615	23.71	2	1	Median	1.0323	1.186	NaN	1	0	Median	1.0566	0.97506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	376550000	223980000	152570000	146770000	80525000	66249000	93844000	75527000	18317000	135930000	67927000	68006000	0	0	0	33726	5135	31909	208073;208074;208075;208076;208077;208078	281097;281098;281099;281100;281101;281102	281097			6	
LRDLLQK	1	Unmodified	884.54435	0.54435122	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.572	26.263	3	0.023514	21719	160511_QHF_FH_JSI10i_3	43.769	10.219			0.52334	0.61174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52334	0.61174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27727000	18071000	9656800	0	0	0	27727000	18071000	9656800	0	0	0	0	0	0	33727	4750	31910	208079	281103	281103			1	
LRDLMEAAFK	1	Unmodified	1192.6274	0.62742892	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			56.647	55.091	3	0.0047433	45195	160511_QHF_FH_JSI9i_3	52.693	41.48			1.3433	1.1154	NaN	1	1	Median	1.3433	1.1154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17102000	6925400	10177000	17102000	6925400	10177000	0	0	0	0	0	0	0	0	0	33728	4997	31911	208080;208081	281104;281105	281105			2	
LRDPSGDFSVR	0	Unmodified	1247.6258	0.62584901	4037	Q96E14	RMI2	RecQ-mediated genome instability protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.559	33.129	3	0.0022366	27096	160511_QHF_FH_JSI9i_3	50.46	44.458			1.1519	0.94462	NaN	1	0	Median	1.1519	0.94462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21496000	9110800	12385000	21496000	9110800	12385000	0	0	0	0	0	0	0	0	0	33729	4037	31912	208082	281106	281106			1	
LRDQLGTAK	1	Unmodified	1000.5665	0.56654322	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		11.383	10.886	2;3	1.1656E-05	8490	160511_QHF_FH_JSI11i_3	93.096	59.833			0.93067	0.88141	7.9316	6	0	Median	1.0997	0.88141	2.3118	2	0	Median	0.72841	0.83383	12.98	2	0	Median	0.93067	0.86663	10.41	2	0	Median	NaN	NaN	NaN	0	0	Median	1505000000	772780000	732270000	567130000	253780000	313350000	412990000	224400000	188590000	524930000	294600000	230330000	0	0	0	33730	2517	31913	208083;208084;208085;208086;208087;208088	281107;281108;281109;281110;281111;281112;281113;281114	281109			8	
LRDTEEMLSK	1	Unmodified	1220.6071	0.60708741	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			5								2	3		24.57	24.251	2;3	0.00017831	20525	160511_QHF_FH_JSI11i_3	141.1	93.521			1.2139	1.1729	128.9	4	4	Median	NaN	NaN	NaN	0	0	Median	6.0029	7.0909	NaN	1	1	Median	0.91655	0.88305	79.452	3	3	Median	NaN	NaN	NaN	0	0	Median	1084700000	536330000	548330000	0	0	0	26416000	3702900	22713000	1058200000	532630000	525620000	0	0	0	33731	4708	31914	208089;208090;208091;208092;208093	281115;281116;281117;281118;281119	281115			5	
LRDVGAYSK	1	Unmodified	1007.54	0.53999412	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.386	13.404	3	0.0034674	10539	160511_QHF_FH_JSI9i_3	59.198	43.569			0.64322	0.51852	NaN	1	1	Median	0.64322	0.51852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96431000	39701000	56730000	96431000	39701000	56730000	0	0	0	0	0	0	0	0	0	33732	2636	31915	208094	281120	281120			1	
LREAAEGLR	0	Unmodified	1013.5618	0.56179219	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			14.037	13.124	2;3	5.979E-05	10322	160511_QHF_FH_JSI9i_3	82.171	39.96			1.1103	1.0032	4.8652	4	0	Linear	1.3111	1.0594	5.1668	2	0	Median	0.9159	1.0714	6.5608	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	416330000	212940000	203390000	279610000	140320000	139290000	136720000	72618000	64106000	0	0	0	0	0	0	33733	5616;5628	31916	208095;208096;208097;208098	281121;281122;281123;281124	281122			4	
LRECLPLIIFLR	0	Unmodified	1541.9116	0.91158969	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.33	82.02	3	4.8102E-09	45777	160513_QHF_FH_JSI11Kac_6	117.23	101.34			1.112	1.208	17.068	4	0	Median	1.4798	1.2666	NaN	1	0	Median	0.97424	1.1521	NaN	1	0	Median	0.93289	0.9088	NaN	1	0	Median	1.2692	1.337	NaN	1	0	Median	659250000	326840000	332400000	119670000	48026000	71646000	384670000	202320000	182350000	86791000	44554000	42237000	68119000	31947000	36172000	33734	2013	31917	208099;208100;208101;208102	281125;281126;281127;281128;281129;281130;281131;281132	281126			8	
LREDENAEPVGTTYQK	1	Unmodified	1848.8854	0.88537076	2749	Q16643	DBN1	Drebrin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	25.492	25.46	3	5.9603E-05	21197	160511_QHF_FH_JSI12i_3	66.436	63.198			0.62705	0.65313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62705	0.65313	NaN	1	0	Median	37660000	17786000	19873000	0	0	0	0	0	0	0	0	0	37660000	17786000	19873000	33735	2749	31918	208103;208104	281133;281134;281135	281135			3	
LREDGIQK	1	Unmodified	957.52434	0.52434406	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	1		By matching	By MS/MS	By matching	3	0			4								1	2	1	10.458	10.323	2;3	0.00085312	7898	160511_QHF_FH_JSI11i_3	76.827	35.397			0.92258	0.9699	23.7	4	0	Median	NaN	NaN	NaN	0	0	Median	0.92414	1.0815	NaN	1	0	Median	1.0358	0.97844	16.643	2	0	Median	0.66154	0.66279	NaN	1	0	Median	642840000	379830000	263000000	0	0	0	27333000	11273000	16059000	421600000	234020000	187580000	193900000	134540000	59367000	33736	102	31919	208105;208106;208107;208108	281136;281137	281136			2	
LREDLER	0	Unmodified	929.49304	0.49304393	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.56	2	5	5					5	4	4	7	7	3	14.613	11.106	2;3	0.00040748	9449	160511_QHF_FH_JSI11i_3	122.74	24.324			0.86891	0.94058	16.269	18	1	Median	1.1332	0.96562	9.1954	4	0	Median	0.78681	0.96161	11.718	6	0	Median	0.81459	0.80987	21.355	5	1	Median	0.65637	0.66481	20.654	3	0	Plateau	9947200000	4978800000	4968400000	1874200000	922510000	951700000	3628800000	1907000000	1721700000	3680900000	1731300000	1949600000	763310000	417990000	345320000	33737	1993	31920	208109;208110;208111;208112;208113;208114;208115;208116;208117;208118;208119;208120;208121;208122;208123;208124;208125;208126;208127;208128;208129	281138;281139;281140;281141;281142;281143;281144;281145;281146;281147;281148;281149;281150;281151;281152;281153;281154;281155;281156;281157;281158;281159;281160;281161;281162	281140			25	
LREEIEELK	1	Unmodified	1157.6292	0.62920306	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	2	4	31.427	30.989	2;3	8.0878E-05	26697	160511_QHF_FH_JSI11i_3	77.379	51.336			1.169	1.1312	22.465	8	3	Median	0.98017	0.83845	NaN	1	0	Median	0.75802	0.94587	NaN	1	0	Median	1.2246	1.1388	4.4336	2	0	Median	1.2535	1.2777	22.276	4	3	Median	1196900000	499020000	697850000	65734000	30329000	35405000	170820000	85401000	85423000	516750000	209280000	307470000	443550000	174000000	269550000	33738	446	31921	208130;208131;208132;208133;208134;208135;208136;208137	281163;281164;281165;281166;281167;281168;281169;281170;281171;281172	281164			10	
LREELLK	1	Unmodified	899.54402	0.54401687	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	23.039	22.719	3	0.0085402	18608	160511_QHF_FH_JSI12i_3	57.047	0			1.5395	1.5065	95.389	4	2	Median	NaN	NaN	NaN	0	0	Median	2.9063	3.3177	NaN	1	0	Median	1.1349	1.0887	NaN	1	0	Median	0.86862	0.875	122.77	2	2	Median	486800000	250110000	236690000	0	0	0	48480000	18022000	30459000	178570000	88279000	90293000	259750000	143800000	115940000	33739	135	31922	208138;208139;208140;208141	281173;281174;281175;281176;281177	281176			5	
LREIEENQK	1	Unmodified	1157.6041	0.60405094	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			10.648	10.013	2	0.00069118	7714	160511_QHF_FH_JSI10i_3	93.649	48.567			0.93874	1.1097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93874	1.1097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56215000	27162000	29053000	0	0	0	56215000	27162000	29053000	0	0	0	0	0	0	33740	2560	31923	208142	281178	281178			1	
LREIELK	1	Unmodified	899.54402	0.54401687	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.147	25.838	3	0.0042786	21400	160511_QHF_FH_JSI10i_3	61.999	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33741	238	31924	208143	281179	281179			1	
LREIFGLYGQTTGK	1	Unmodified	1581.8515	0.85149185	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.9	5.96			7						3	3	4	3		60.577	58.023	2;3	0.00011175	47718	160511_QHF_FH_JSI9i_3	83.856	68.037			0.79183	0.78811	26.319	9	3	Median	0.94509	0.77554	21.277	3	0	Median	0.73283	0.80413	8.452	3	1	Plateau	0.65706	0.62112	44.309	3	2	Median	NaN	NaN	NaN	0	0	Median	780430000	447020000	333410000	175090000	87128000	87959000	183170000	105370000	77797000	422170000	254520000	167650000	0	0	0	33742	4941	31925	208144;208145;208146;208147;208148;208149;208150;208151;208152;208153	281180;281181;281182;281183;281184;281185;281186;281187;281188;281189	281186			8	
LRELDPSLVSANDSPSGMQTR	0	Unmodified	2272.1118	0.11175865	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			57.126	55.577	3	2.9843E-09	46465	160511_QHF_FH_JSI10i_3	99.407	94.405			1.2064	1.1936	12.51	2	1	Median	1.5871	1.304	NaN	1	1	Median	0.91699	1.0926	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78587000	39754000	38833000	23456000	9961200	13495000	55131000	29793000	25338000	0	0	0	0	0	0	33743	2977	31926	208154;208155;208156;208157	281190;281191;281192;281193;281194;281195	281192			6	
LRELGPDGEEAEGPGAGDGPPR	0	Unmodified	2175.0192	0.019238477	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								1	2			37.465	36.501	3	8.1797E-06	32066	160511_QHF_FH_JSI10i_2	55.128	39.874			0.56369	0.69578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56369	0.69578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28753000	21185000	7567600	0	0	0	28753000	21185000	7567600	0	0	0	0	0	0	33744	1142	31927	208158;208159;208160	281196;281197;281198;281199	281199			4	
LRELIEVK	1	Unmodified	998.61243	0.61243078	5850				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		52.787	52.002	3	0.002357	45748	160511_QHF_FH_JSI11i_3	65.224	1.4082	+		1.232	1.0518	13.083	4	0	Linear	1.1143	0.89209	NaN	1	0	Median	0.69975	0.81213	NaN	1	0	Median	1.1609	1.0571	0	2	0	Median	NaN	NaN	NaN	0	0	Median	197310000	98092000	99222000	48349000	19576000	28773000	45319000	25994000	19325000	103650000	52522000	51124000	0	0	0	33745	5850	31928	208161;208162;208163;208164	281200	281200			1	
LRELPLAADALTFAEVSK	1	Unmodified	1943.0728	0.072777598	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			97.681	97.42	3	0.0011108	80585	160511_QHF_FH_JSI10i_3	52.045	47.693			1.0708	1.2432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0708	1.2432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10640000	6429400	4210700	0	0	0	10640000	6429400	4210700	0	0	0	0	0	0	33746	5608	31929	208165	281201	281201			1	
LREMESNWVSLVSK	1	Unmodified	1676.8556	0.85559095	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		68.814	68.071	3	0.00016648	56186	160511_QHF_FH_JSI9i_3	59.709	57.267			0.90248	0.79716	75.411	2	1	Median	0.57466	0.4677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4173	1.3587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93500000	52948000	40552000	38144000	27506000	10638000	0	0	0	55356000	25442000	29914000	0	0	0	33747	585	31930	208166;208167	281202;281203	281203			2	
LRENELTYYCCK	1	Unmodified	1647.7385	0.73851229	1046	P13987	CD59	CD59 glycoprotein	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	37.305	36.869	2;3	3.5132E-05	32164	160511_QHF_FH_JSI11i_3	140.39	123.76			0.95392	0.90447	28.709	6	0	Median	1.0474	0.89314	NaN	1	0	Median	1.276	1.5572	NaN	1	0	Median	0.80258	0.80989	20.701	3	0	Median	0.86878	0.91593	NaN	1	0	Median	332410000	150520000	181890000	29847000	10140000	19708000	39289000	15498000	23791000	214620000	100040000	114590000	48649000	24851000	23798000	33748	1046	31931	208168;208169;208170;208171;208172;208173	281204;281205;281206;281207;281208;281209	281204			5	
LRENSASQISQLEQQLSAK	1	Unmodified	2129.1077	0.10765955	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	1	By MS/MS				3	0			2							2				64.827	63.326	3	3.4673E-08	51989	160511_QHF_FH_JSI9i_3	107.97	88.418			1.1629	0.92443	NaN	1	0	Median	1.1629	0.92443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50298000	19920000	30378000	50298000	19920000	30378000	0	0	0	0	0	0	0	0	0	33749	1489;2481	31932	208174;208175	281210;281211	281210			2	
LREQGTESR	0	Unmodified	1074.5418	0.54178503	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.44		2	4					3	3	4	5	1	2	5.0192	0.69206	2;3	4.9552E-06	2406	160511_QHF_FH_JSI9i_3	108.43	66.241			1.0176	1.1145	14.659	12	0	Median	1.4811	1.2131	14.424	4	0	Median	0.86477	0.98739	12.893	5	0	Median	1.1955	1.197	NaN	1	0	Median	1.0044	1.1113	13.73	2	0	Median	4511200000	2034800000	2476400000	2859100000	1108800000	1750300000	1626100000	912840000	713280000	8467300	3810600	4656700	17554000	9369500	8184300	33750	1526;1527	31933	208176;208177;208178;208179;208180;208181;208182;208183;208184;208185;208186;208187	281212;281213;281214;281215;281216;281217;281218;281219;281220;281221;281222;281223;281224	281217			13	
LREQLSQAEAMK	1	Unmodified	1402.7238	0.7238485	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			27.794	26.425	3	6.1813E-05	21928	160511_QHF_FH_JSI10i_3	81.494	69.726			1.8462	1.5027	NaN	1	1	Median	1.8462	1.5027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27059000	13592000	13468000	27059000	13592000	13468000	0	0	0	0	0	0	0	0	0	33751	4659	31934	208188;208189	281225;281226	281225			2	
LREQQAADAK	1	Unmodified	1128.5887	0.58873523	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			6.0744	5.5648	3	0.0023776	3616	160511_QHF_FH_JSI10i_3	44.847	20.758			1.5115	1.4641	21.794	2	0	Median	2.0432	1.708	NaN	1	0	Median	1.1182	1.255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139310000	67898000	71409000	33601000	11920000	21681000	105710000	55978000	49728000	0	0	0	0	0	0	33752	3555	31935	208190;208191	281227	281227			1	
LREQQAADAKK	2	Unmodified	1256.6837	0.68369824	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.5888	5.0658	3	0.0021869	3075	160511_QHF_FH_JSI9i_3	60.157	34.145			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33753	3555	31936	208192	281228	281228			1	
LREQQLVGEK	1	Unmodified	1198.667	0.66698555	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				21.588	20.318	3	0.01767	16216	160511_QHF_FH_JSI9i_3	30.889	12.109			1.7952	1.4717	NaN	1	0	Median	1.7952	1.4717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98278000	43573000	54705000	98278000	43573000	54705000	0	0	0	0	0	0	0	0	0	33754	2491	31937	208193	281229	281229			1	
LREQVEER	0	Unmodified	1057.5516	0.55162144	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.4874	7.9367	2	0.047768	5786	160511_QHF_FH_JSI10i_3	60.91	23.183			0.68272	0.79146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68272	0.79146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32649000	16781000	15867000	0	0	0	32649000	16781000	15867000	0	0	0	0	0	0	33755	153	31938	208194	281230;281231	281230			2	
LREQVVK	1	Unmodified	870.5287	0.52870115	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	3	2		10.181	9.7179	2;3	0.0090764	7618	160511_QHF_FH_JSI10i_2	56.547	25.257			0.93551	0.91549	9.0076	8	1	Median	1.2349	0.96926	6.919	3	1	Plateau	0.90497	1.043	10.187	3	0	Median	0.91771	0.87485	5.272	2	0	Median	NaN	NaN	NaN	0	0	Median	5427800000	2642400000	2785400000	2175100000	985000000	1190100000	1562500000	769530000	792930000	1690200000	887850000	802370000	0	0	0	33756	1067	31939	208195;208196;208197;208198;208199;208200;208201;208202	281232;281233;281234;281235;281236;281237;281238;281239	281238			8	
LREQYGLGPYEAVTPLTK	1	Unmodified	2034.0786	0.078591257	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	67.223	66.631	3	5.9945E-06	55940	160511_QHF_FH_JSI10i_3	93.269	73.716			1.0047	1.0583	25.404	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0047	1.1296	NaN	1	0	Median	1.1288	1.0583	NaN	1	0	Median	0.72299	0.70673	NaN	1	0	Median	161080000	83408000	77673000	0	0	0	40423000	20903000	19520000	76915000	38006000	38909000	43743000	24499000	19244000	33757	2320	31940	208203;208204;208205;208206	281240;281241;281242;281243;281244;281245	281243			6	
LRESEGLQEQK	1	Unmodified	1315.6732	0.67319314	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	1			By MS/MS		7	5.66			2					1				3		15.215	10.498	2;3	0.00083701	9478	160511_QHF_FH_JSI11i_3	62.408	44.271			0.76531	0.72782	27.848	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76531	0.72782	27.848	2	1	Median	NaN	NaN	NaN	0	0	Median	32019000	14494000	17526000	0	0	0	0	0	0	32019000	14494000	17526000	0	0	0	33758	5106	31941	208207;208208;208209	281246;281247;281248;281249	281247			4	
LRESTPGDSPSTVNK	1	Unmodified	1586.79	0.79001381	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.14	5.62		2	3					2		3	2	2		18.183	14.978	3	2.1472E-05	12476	160511_QHF_FH_JSI10i_3	118.52	110.8			1.1495	1.005	32.737	7	3	Median	1.1851	1.005	46.125	3	2	Median	0.73299	0.86146	0.17533	2	1	Median	1.3552	1.2892	20.733	2	0	Median	NaN	NaN	NaN	0	0	Median	294070000	143880000	150190000	89817000	38886000	50931000	133950000	82851000	51103000	70294000	22139000	48155000	0	0	0	33759	2950	31942	208210;208211;208212;208213;208214;208215;208216	281250;281251;281252;281253;281254;281255;281256;281257;281258	281253			9	
LRETLEEYNK	1	Unmodified	1293.6565	0.65648044	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	1			By MS/MS		3	0			1									1		23.392	23.392	3	0.010542	19776	160511_QHF_FH_JSI11i_3	46.955	38.65			1.1341	1.0784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1341	1.0784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61055000	30104000	30951000	0	0	0	0	0	0	61055000	30104000	30951000	0	0	0	33760	1489;2481	31943	208217	281259	281259			1	
LRETLNISGPPLK	1	Unmodified	1436.8351	0.83511351	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		54.116	53.074	3	0.00046431	43549	160511_QHF_FH_JSI9i_3	65.565	60.486			0.97345	0.88592	10.772	3	0	Median	1.0526	0.86426	NaN	1	0	Median	0.90813	1.0532	NaN	1	0	Median	0.97345	0.88592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236490000	128920000	107570000	107790000	54619000	53175000	75712000	44362000	31350000	52981000	29939000	23042000	0	0	0	33761	1313	31944	208218;208219;208220	281260;281261;281262;281263;281264	281263			5	
LRETQDPTAQSLAASLSTR	0	Unmodified	2044.0549	0.054895702	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			55.354	53.795	3	0.00017621	44172	160511_QHF_FH_JSI9i_3	56.9	49.203			1.2451	1.1929	14.934	2	1	Median	1.3043	1.0733	NaN	1	0	Median	1.1885	1.3258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63338000	23419000	39919000	42264000	16990000	25274000	21074000	6429200	14645000	0	0	0	0	0	0	33762	15	31945	208221;208222	281265;281266;281267;281268	281268			4	
LRETVTK	1	Unmodified	845.49707	0.49706667	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.1138	7.5631	3	0.0085402	5429	160511_QHF_FH_JSI10i_3	57.047	25.758			0.96016	1.1269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96016	1.1269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204960000	95142000	109820000	0	0	0	204960000	95142000	109820000	0	0	0	0	0	0	33763	2605	31946	208223	281269	281269			1	
LREVVETPLLHPER	0	Unmodified	1686.9417	0.94170385	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			50.722	49.14	3;4	3.761E-05	40023	160511_QHF_FH_JSI9i_3	79.81	67.895			0.55161	0.53456	41.537	4	2	Median	0.85908	0.69595	48.757	2	1	Median	0.39063	0.45959	32.817	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	487310000	276410000	210900000	275260000	136020000	139250000	212050000	140390000	71655000	0	0	0	0	0	0	33764	1449	31947	208224;208225;208226;208227	281270;281271;281272;281273;281274;281275	281273			6	
LREVVLDANTTQFK	1	Unmodified	1632.8835	0.88352026	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			53.035	51.473	3	0.00029793	43007	160511_QHF_FH_JSI10i_3	84.759	53.932			0.57836	0.6714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57836	0.6714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28283000	18308000	9975900	0	0	0	28283000	18308000	9975900	0	0	0	0	0	0	33765	2180	31948	208228	281276	281276			1	
LREYEAALNSK	1	Unmodified	1292.6725	0.67246486	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.37		6	10						4	6	6	5	3	26.288	24.215	2;3	4.2066E-05	19997	160511_QHF_FH_JSI12i_3	75.479	54.249			1.5567	1.3746	63.962	18	11	Median	2.1559	1.7285	38.23	5	2	Median	1.2104	1.4467	69.424	6	5	Median	0.57638	0.5571	77.354	5	4	Median	1.3497	1.3658	26.285	2	0	Median	3309300000	1663700000	1645500000	396400000	154360000	242040000	917830000	484760000	433070000	1641600000	866190000	775430000	353420000	158420000	194990000	33766	1180	31949	208229;208230;208231;208232;208233;208234;208235;208236;208237;208238;208239;208240;208241;208242;208243;208244;208245;208246;208247;208248	281277;281278;281279;281280;281281;281282;281283;281284;281285;281286;281287;281288;281289;281290;281291;281292;281293;281294;281295;281296	281294			19	
LRFDFTAK	1	Unmodified	996.53927	0.53926584	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	50.553	49.703	3	0.0011634	41877	160511_QHF_FH_JSI10i_3	71.451	51.664			1.009	0.95451	10.016	4	0	Median	1.2138	0.97379	NaN	1	0	Median	0.82504	0.93562	NaN	1	0	Median	1.1672	1.1068	NaN	1	0	Median	0.87218	0.8718	NaN	1	0	Median	609030000	305330000	303710000	219870000	96921000	122940000	145990000	75496000	70493000	189850000	107860000	81994000	53324000	25048000	28276000	33767	1664	31950	208249;208250;208251;208252	281297;281298;281299;281300;281301;281302;281303;281304	281300			8	
LRFETYQLIWQQMK	1	Unmodified	1882.9764	0.97637479	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	84.573	76.324	3	1.7473E-05	41589	160513_QHF_FH_JSI9Kac_6	101.3	88.579			0.91514	0.9335	12.71	4	0	Median	1.0661	0.91789	NaN	1	0	Median	0.80582	0.94938	NaN	1	0	Median	0.79791	0.80084	NaN	1	0	Median	1.0393	1.0913	NaN	1	0	Median	424850000	210770000	214080000	110130000	49738000	60392000	227730000	119240000	108490000	35453000	16616000	18837000	51536000	25178000	26357000	33768	5232	31951	208253;208254;208255;208256	281305;281306	281305			2	
LRFPAEDEFPDLSAHNNHMAK	1	Unmodified	2438.1437	0.14372748	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				70.592	69.106	5	0.050897	56828	160511_QHF_FH_JSI9i_3	18.316	13.867			0.82164	0.67813	NaN	1	0	Median	0.82164	0.67813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32991000	15820000	17171000	32991000	15820000	17171000	0	0	0	0	0	0	0	0	0	33769	1017	31952	208257	281307	281307			0	
LRGDAAAGPGPGAGAGAAAEPEPR	0	Unmodified	2115.0457	0.045727999	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			28.643	27.476	3	2.4507E-28	22788	160511_QHF_FH_JSI10i_3	162.71	155.2			0.97338	1.0214	7.6276	4	0	Median	1.211	1.0049	11.425	2	0	Median	0.86022	1.0214	6.4326	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250260000	120420000	129840000	164010000	75356000	88655000	86253000	45064000	41189000	0	0	0	0	0	0	33770	3038	31953	208258;208259;208260;208261	281308;281309;281310;281311;281312;281313;281314;281315	281309			8	
LRGDVAIK	1	Unmodified	870.5287	0.52870115	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	16.032	15.602	2;3	0.002357	12709	160511_QHF_FH_JSI11i_3	65.224	23.776			0.86095	0.89566	12.229	7	0	Median	1.3964	1.1198	NaN	1	0	Median	0.85262	1.0146	3.6097	2	0	Median	0.94211	0.87839	2.7526	2	0	Median	0.82761	0.8231	4.0724	2	0	Median	1293700000	669860000	623790000	266030000	95708000	170320000	358260000	171770000	186500000	362960000	208150000	154810000	306400000	194230000	112170000	33771	1795	31954	208262;208263;208264;208265;208266;208267;208268	281316;281317	281316			2	
LRGLEAAQIK	1	Unmodified	1097.6557	0.65569258	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			33.13	31.721	3	2.6355E-05	25901	160511_QHF_FH_JSI9i_3	90.653	53.309			1.0474	1.0079	29.43	2	1	Median	1.553	1.241	NaN	1	0	Median	0.70642	0.81851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117950000	57902000	60052000	93549000	45818000	47731000	24405000	12084000	12320000	0	0	0	0	0	0	33772	2587	31955	208269;208270	281318;281319	281319			2	
LRGPSGGGEEPALSQYQR	0	Unmodified	1900.9391	0.93913766	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.5	35.043	3	0.0015474	28558	160511_QHF_FH_JSI9i_3	49.537	45.056			0.69189	0.56078	NaN	1	0	Median	0.69189	0.56078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44494000	26014000	18481000	44494000	26014000	18481000	0	0	0	0	0	0	0	0	0	33773	4284	31956	208271	281320;281321	281320			2	
LRGQPFYAVEK	1	Unmodified	1306.7034	0.70337105	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			37.515	36.057	3	0.061327	30144	160511_QHF_FH_JSI10i_3	28.624	20.319			0.17476	0.2059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17476	0.2059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26674000	20046000	6627500	0	0	0	26674000	20046000	6627500	0	0	0	0	0	0	33774	3927	31957	208272	281322	281322			1	
LRIEEEIR	0	Unmodified	1056.5928	0.59275797	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		34.261	33.55	3	0.0001382	29163	160511_QHF_FH_JSI11i_3	103.55	19.599			1.038	1.1087	23.448	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79801	0.93928	NaN	1	0	Median	1.3502	1.3086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81296000	34390000	46905000	0	0	0	17373000	9299800	8072800	63923000	25091000	38832000	0	0	0	33775	2636	31958	208273;208274	281323;281324;281325	281323			3	
LRIEHQTITTPSK	1	Unmodified	1522.8467	0.84674083	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				30.406	29.014	3	0.035657	23532	160511_QHF_FH_JSI9i_3	35.35	23.557			0.94203	0.76954	NaN	1	1	Median	0.94203	0.76954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29150000	13604000	15546000	29150000	13604000	15546000	0	0	0	0	0	0	0	0	0	33776	1506	31959	208275	281326	281326			1	
LRITESEEVVSR	0	Unmodified	1416.7573	0.75725712	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							3	2			37.872	36.484	2;3	3.8452E-23	29786	160511_QHF_FH_JSI9i_3	150.69	131.86			1.0436	0.99125	20.694	5	1	Median	1.5042	1.2129	20.902	3	1	Median	0.76517	0.89911	13.797	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	412640000	197940000	214700000	290800000	135270000	155540000	121840000	62669000	59167000	0	0	0	0	0	0	33777	791	31960	208276;208277;208278;208279;208280	281327;281328;281329;281330;281331;281332;281333;281334	281331			8	
LRLDLPSGSK	1	Unmodified	1084.6241	0.6240581	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	44.922	44.071	2;3	5.2727E-05	38604	160511_QHF_FH_JSI11i_3	79.659	63.521			0.90871	0.90456	18.008	8	0	Median	1.0803	0.88427	0.83536	2	0	Median	0.7873	0.93501	2.308	2	0	Median	1.1091	1.0541	6.5795	2	0	Median	0.67099	0.67065	4.692	2	0	Median	1243600000	621840000	621710000	375010000	171700000	203310000	412470000	214350000	198120000	286040000	136690000	149350000	170030000	99105000	70925000	33778	3588	31961	208281;208282;208283;208284;208285;208286;208287;208288	281335;281336;281337;281338;281339;281340;281341;281342;281343	281335			9	
LRLEAPSPK	1	Unmodified	1009.592	0.59202969	3640	Q8NEN9	PDZD8	PDZ domain-containing protein 8	yes	yes	0	0	0	1	By matching		By MS/MS		3	0			2							1		1		31.544	30.835	3	0.0064465	26608	160511_QHF_FH_JSI11i_3	44.425	18.382			1.1004	0.94841	12.323	2	0	Median	1.0519	0.86927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1512	1.0348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56962000	29804000	27158000	22747000	12875000	9872000	0	0	0	34214000	16928000	17286000	0	0	0	33779	3640	31962	208289;208290	281344	281344			1	
LRLEQQK	1	Unmodified	913.53451	0.53451481	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			11.649	10.957	3	0.019967	8587	160511_QHF_FH_JSI10i_3	43.814	0			0.71151	0.81214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71151	0.81214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150420000	80480000	69940000	0	0	0	150420000	80480000	69940000	0	0	0	0	0	0	33780	4700	31963	208291	281345	281345			1	
LRLESEGSPETLTNLR	0	Unmodified	1813.9534	0.95339074	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			58.215	56.675	3	1.1173E-05	47450	160511_QHF_FH_JSI10i_3	79.317	72.259			1.0432	1.0035	27.527	2	0	Median	1.5132	1.2192	NaN	1	0	Median	0.71924	0.82604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113930000	47455000	66476000	54651000	17317000	37335000	59280000	30139000	29142000	0	0	0	0	0	0	33781	5177	31964	208292;208293	281346;281347;281348	281346			3	
LRLNDGNEYLFQAK	1	Unmodified	1679.8631	0.86311917	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			61.484	59.964	3	0.0010627	50188	160511_QHF_FH_JSI10i_3	65.472	45.867			14.964	14.231	112.95	2	2	Median	8.0185	6.4031	NaN	1	1	Median	27.926	31.629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	893000000	50224000	842770000	156880000	21792000	135090000	736120000	28432000	707680000	0	0	0	0	0	0	33782	2162	31965	208294;208295	281349;281350	281349			2	
LRLPLDK	1	Unmodified	853.53854	0.53853756	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		42.279	41.5	3	0.0035941	34088	160511_QHF_FH_JSI9i_3	83.206	25.925			0.89825	0.79029	48.326	4	1	Median	1.0704	0.88667	NaN	1	0	Median	0.58424	0.70439	NaN	1	0	Median	1.2548	1.1565	72.743	2	1	Median	NaN	NaN	NaN	0	0	Median	292180000	131670000	160500000	75151000	33581000	41570000	78701000	42886000	35815000	138330000	55208000	83117000	0	0	0	33783	2636	31966	208296;208297;208298;208299	281351;281352;281353;281354;281355;281356;281357	281356			7	
LRLQEEITK	1	Unmodified	1128.6503	0.65027285	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							3	2	2		34.503	33.536	2;3	7.08E-06	29189	160511_QHF_FH_JSI11i_3	108.47	71.279			1.1358	0.94494	34.179	7	1	Median	1.1358	0.90802	57.149	3	1	Median	0.79064	0.91531	4.5059	2	0	Median	1.2074	1.1102	8.4285	2	0	Median	NaN	NaN	NaN	0	0	Median	1140500000	557300000	583200000	262460000	109730000	152730000	388290000	211430000	176860000	489760000	236140000	253610000	0	0	0	33784	1824	31967	208300;208301;208302;208303;208304;208305;208306	281358;281359;281360;281361;281362;281363	281358			6	
LRNAGNEQDLGIQYK	1	Unmodified	1717.8747	0.87474649	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			35.753	34.312	3	0.0001876	28631	160511_QHF_FH_JSI10i_3	71.344	60.859			1.1107	1.0631	18.063	2	0	Median	1.1379	0.93565	NaN	1	0	Median	1.0841	1.208	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80251000	36484000	43766000	40324000	17282000	23042000	39926000	19202000	20724000	0	0	0	0	0	0	33785	1421	31968	208307;208308	281364	281364			1	
LRNDPLNQNK	1	Unmodified	1210.6418	0.64183343	5228	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.195	13.214	2	0.053083	10354	160511_QHF_FH_JSI9i_3	51.066	33.826			1.2339	1.036	NaN	1	0	Median	1.2339	1.036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15159000	6625400	8533200	15159000	6625400	8533200	0	0	0	0	0	0	0	0	0	33786	5228	31969	208309	281365	281365			1	
LRNELQTDKPFIPLVEK	2	Unmodified	2039.1415	0.14152586	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		66.342	66.342	4	0.0089222	59093	160511_QHF_FH_JSI11i_3	39.853	34.749			0.81932	0.79358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81932	0.79358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62418000	38220000	24198000	0	0	0	0	0	0	62418000	38220000	24198000	0	0	0	33787	4800	31970	208310	281366	281366			1	
LRNEYGPVLHMPTSK	1	Unmodified	1740.8981	0.89812447	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							3	1			46.521	44.911	3;4	0.00033319	36732	160511_QHF_FH_JSI9i_3	64.675	45.6			1.1156	0.91638	NaN	1	0	Median	1.1156	0.91638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27563000	14474000	13089000	27563000	14474000	13089000	0	0	0	0	0	0	0	0	0	33788	350	31971	208311;208312;208313;208314	281367;281368;281369;281370	281369			4	
LRPEDPVLK	1	Unmodified	1065.6182	0.61824444	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	30.936	30.59	2;3	0.0030203	25759	160511_QHF_FH_JSI12i_3	53.751	35.932			0.73963	0.79504	24.071	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.746	0.69139	38.196	2	0	Median	0.73963	0.79504	9.1797	2	0	Median	566900000	331140000	235760000	0	0	0	0	0	0	257390000	158920000	98468000	309510000	172220000	137300000	33789	3736	31972	208315;208316;208317;208318	281371;281372;281373;281374;281375;281376	281376			6	
LRPESALAQAQK	1	Unmodified	1310.7306	0.73064844	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			4							2	1	1		28.439	27.417	2;3	6.4577E-05	22216	160511_QHF_FH_JSI9i_3	66.023	55.413			1.0725	0.92576	12.652	4	0	Median	1.2842	1.0422	3.9792	2	0	Median	0.73064	0.83495	NaN	1	0	Median	0.91089	0.84577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	402950000	204980000	197970000	309430000	154830000	154600000	48755000	25127000	23628000	44761000	25020000	19740000	0	0	0	33790	611	31973	208319;208320;208321;208322	281377;281378;281379	281378			3	
LRPGSIETYEQEK	1	Unmodified	1548.7784	0.77838649	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			34.86	33.428	3	0.0020943	27226	160511_QHF_FH_JSI9i_3	60.901	51.619			1.4578	1.4214	6.5064	2	2	Median	1.8025	1.4884	NaN	1	1	Median	1.179	1.3575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121540000	54561000	66980000	69565000	29899000	39665000	51976000	24661000	27315000	0	0	0	0	0	0	33791	4473	31974	208323;208324	281380;281381	281381			2	
LRPLYDIPYMFEAR	0	Unmodified	1782.9127	0.9127119	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							1	4	1		95.435	94.84	3	0.0017799	83622	160511_QHF_FH_JSI11i_3	58.071	45.239			1.0981	1.0822	49.33	6	4	Median	1.294	1.0676	NaN	1	0	Median	0.89557	1.0698	62.203	4	3	Median	1.3753	1.2462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106450000	44612000	61838000	19754000	5145700	14609000	47056000	22342000	24714000	39640000	17125000	22515000	0	0	0	33792	3213	31975	208325;208326;208327;208328;208329;208330	281382;281383;281384;281385;281386;281387;281388;281389	281382			8	
LRPQTYDLQESNVQLK	1	Unmodified	1931.0112	0.011239973	3853	Q92599	SEPT8	Septin-8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			51.321	49.74	3	3.3923E-07	40749	160511_QHF_FH_JSI9i_3	127.29	101.14			0.91922	0.91536	7.1499	2	0	Median	1.1754	0.96283	NaN	1	0	Median	0.71889	0.87024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201250000	105620000	95637000	116090000	60098000	55991000	85164000	45517000	39647000	0	0	0	0	0	0	33793	3853	31976	208331;208332	281390;281391	281391			2	
LRPSADELLR	0	Unmodified	1168.6564	0.65642086	5537	Q9Y2U5	MAP3K2	Mitogen-activated protein kinase kinase kinase 2	yes	yes	0	0	0	1			By MS/MS	By matching	2	0		2										1	1	36.949	36.056	3	0.055218	30741	160511_QHF_FH_JSI11i_2	18.672	1.1987			1.0173	1.0769	33.366	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84025	0.85055	NaN	1	0	Median	1.2317	1.3634	NaN	1	0	Median	43737000	19570000	24167000	0	0	0	0	0	0	23647000	10973000	12674000	20090000	8596400	11494000	33794	5537	31977	208333;208334	281392	281392			1	
LRQDFEEVTTQNEK	1	Unmodified	1735.8377	0.83769228	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							2	3	2		31.966	31.248	3	0.00020186	27170	160511_QHF_FH_JSI11i_3	90.707	78.731			0.85162	0.9123	37.427	6	6	Median	1.1063	0.96153	NaN	1	1	Median	0.74005	0.86558	26.975	3	3	Median	1.064	0.98344	73.712	2	2	Median	NaN	NaN	NaN	0	0	Median	247280000	125860000	121420000	33835000	12242000	21594000	135450000	71259000	64187000	78002000	42360000	35642000	0	0	0	33795	2988	31978	208335;208336;208337;208338;208339;208340;208341	281393;281394;281395;281396;281397;281398;281399;281400	281394			8	
LRQEEEER	0	Unmodified	1087.5258	0.52580062	4070	Q96FC9	DDX11	Probable ATP-dependent RNA helicase DDX11	no	no	0	0	0	1	By MS/MS				2	0		1								1				5.4312	5.0374	2	0.057116	2934	160511_QHF_FH_JSI9i_2	57.047	1.0341			1.3841	1.1538	NaN	1	0	Median	1.3841	1.1538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	594840000	314820000	280020000	594840000	314820000	280020000	0	0	0	0	0	0	0	0	0	33796	4070	31979	208342	281401	281401			1	
LRQEEPQSLQAAVR	0	Unmodified	1623.8693	0.86926718	1325	P29590	PML	Protein PML	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			32.95	31.541	3	5.683E-05	26418	160511_QHF_FH_JSI10i_3	98.943	82.953			1.4339	1.3943	38.754	2	0	Median	2.213	1.8338	NaN	1	0	Median	0.92909	1.0601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80050000	40164000	39886000	31698000	10474000	21224000	48353000	29690000	18662000	0	0	0	0	0	0	33797	1325	31980	208343;208344	281402;281403;281404	281403			3	
LRQEGSEEGMYVLR	0	Unmodified	1665.8145	0.81445442	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			40.388	38.883	3	0.012585	32414	160511_QHF_FH_JSI10i_3	76.588	69.18			0.84843	0.99052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84843	0.99052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17987000	8931400	9055700	0	0	0	17987000	8931400	9055700	0	0	0	0	0	0	33798	1230	31981	208345	281405	281405			0	
LRQELGICPAVK	1	Unmodified	1382.7704	0.77040476	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		40.158	39.144	3	0.0078803	34268	160511_QHF_FH_JSI11i_3	34.685	27.645			0.21873	0.20345	26.733	3	0	Median	0.21467	0.17381	NaN	1	0	Median	0.24055	0.29271	NaN	1	0	Median	0.21873	0.20345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	281590000	228160000	53431000	96967000	80132000	16834000	82263000	67437000	14826000	102360000	80592000	21771000	0	0	0	33799	1296	31982	208346;208347;208348	281406	281406			1	
LRQELSK	1	Unmodified	872.50797	0.50796571	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		8.3448	7.964	3	0.0028621	5548	160511_QHF_FH_JSI11i_3	75.213	14.453			0.82412	0.78024	7.8968	3	0	Median	1.085	0.87847	NaN	1	0	Median	0.64782	0.75638	NaN	1	0	Median	0.82412	0.78024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	700930000	320670000	380250000	398320000	161380000	236940000	241930000	128990000	112940000	60685000	30314000	30371000	0	0	0	33800	5213	31983	208349;208350;208351;208352	281407;281408;281409;281410;281411	281407			5	
LRQENIELGEK	1	Unmodified	1327.7096	0.70957864	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		26.992	26.338	3	0.00016708	22476	160511_QHF_FH_JSI11i_3	85.845	61.554			1.3934	1.4399	12.544	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1574	1.3177	NaN	1	0	Median	1.6776	1.5735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	258350000	117180000	141170000	0	0	0	148150000	75483000	72669000	110200000	41701000	68501000	0	0	0	33801	5011	31984	208353;208354	281412;281413	281412			1	
LRQENMELAER	0	Unmodified	1387.6878	0.68779734	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							2	3			23.878	22.737	2;3	3.3069E-05	18722	160511_QHF_FH_JSI10i_3	76.326	69.444			0.91994	1.0412	19.599	5	2	Median	1.6913	1.4173	12.385	2	1	Median	0.88289	1.0309	3.9055	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292320000	143600000	148710000	121560000	44783000	76772000	170760000	98820000	71940000	0	0	0	0	0	0	33802	1493	31985	208355;208356;208357;208358;208359	281414;281415;281416;281417;281418;281419;281420	281414			7	
LRQEVDQLK	1	Unmodified	1127.6299	0.62987176	502	O75335	PPFIA4	Liprin-alpha-4	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	16.157	15.713	3	0.021727	13403	160511_QHF_FH_JSI12i_1	34.387	7.0831			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33803	502	31986	208360	281421	281421			1	
LRQLAEEDLAQQR	0	Unmodified	1568.8271	0.82706802	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				33.797	32.367	3	0.00010835	26447	160511_QHF_FH_JSI9i_3	76.073	56.998			1.1877	0.94616	NaN	1	0	Median	1.1877	0.94616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52920000	21507000	31413000	52920000	21507000	31413000	0	0	0	0	0	0	0	0	0	33804	2636	31987	208361	281422	281422			1	
LRQNLDALLNQLK	1	Unmodified	1537.894	0.89402537	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			76.964	75.548	3	0.0034933	63406	160511_QHF_FH_JSI10i_3	50.563	37.936			0.67026	0.7697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67026	0.7697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12125000	6901600	5223500	0	0	0	12125000	6901600	5223500	0	0	0	0	0	0	33805	2517	31988	208362	281423	281423			1	
LRQQLEAAEK	1	Unmodified	1184.6513	0.65133548	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			13.125	12.276	3	0.0055206	9623	160511_QHF_FH_JSI9i_3	50.149	40.961			0.98007	1.1487	44.875	3	3	Median	1.4243	1.1481	63.462	2	2	Median	0.98007	1.1487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120510000	58022000	62484000	92470000	40949000	51521000	28036000	17073000	10963000	0	0	0	0	0	0	33806	1360	31989	208363;208364;208365	281424;281425;281426	281426			3	
LRQVEELQQR	0	Unmodified	1297.7102	0.71024735	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				21.978	20.708	2	0.011946	16653	160511_QHF_FH_JSI9i_3	85.355	37.752			0.55771	0.46426	NaN	1	1	Median	0.55771	0.46426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18912000	11563000	7349300	18912000	11563000	7349300	0	0	0	0	0	0	0	0	0	33807	4378	31990	208366	281427	281427			1	
LRQYAEK	1	Unmodified	906.49232	0.49231565	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			6.4436	5.934	3	0.019972	3984	160511_QHF_FH_JSI10i_3	43.808	11.873			1.0329	1.0008	16.087	2	0	Median	1.1095	0.89317	NaN	1	0	Median	0.96161	1.1213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	734130000	393640000	340490000	416350000	207090000	209270000	317780000	186550000	131220000	0	0	0	0	0	0	33808	1327	31991	208367;208368	281428;281429	281428			2	
LRSDAGLESDTAMK	1	Oxidation (M)	1508.7141	0.71407167	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									2	1	20.806	20.819	3	0.00043888	14540	160511_QHF_FH_JSI12i_3	72.175	64.264			1.1828	1.114	82.514	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.215	2.0803	88.319	2	0	Median	0.81363	0.81742	NaN	1	0	Median	271940000	122010000	149930000	0	0	0	0	0	0	169320000	66821000	102500000	102620000	55192000	47430000	33809	4940	31992	208369;208370;208371	281430;281431;281432;281433	281433		2559	3	
LRSDAGLESDTAMK	1	Unmodified	1492.7192	0.71915705	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	27.37	26.805	2;3	5.304E-05	22355	160511_QHF_FH_JSI12i_3	101.36	93.987			0.95837	1.137	23.811	10	1	Median	1.3757	1.1926	7.9459	2	0	Median	0.94188	1.1497	0.37397	2	1	Median	0.86509	0.80602	34.487	3	0	Median	0.96663	0.99359	30.058	3	0	Median	1694600000	776990000	917560000	240920000	92028000	148900000	301240000	151620000	149620000	583020000	261050000	321970000	569360000	272290000	297070000	33810	4940	31992	208372;208373;208374;208375;208376;208377;208378;208379;208380;208381	281434;281435;281436;281437;281438;281439;281440;281441;281442;281443;281444;281445;281446;281447	281446			14	
LRSDIAVPIPK	1	Unmodified	1207.7289	0.72885752	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	3	3	2	52.606	51.871	2;3	0.00044735	45678	160511_QHF_FH_JSI11i_3	57.019	39.852			0.98392	1.0155	12.802	9	0	Median	1.4074	1.1105	NaN	1	0	Median	0.78817	0.8996	10.971	3	0	Median	1.1811	1.1215	20.139	3	0	Plateau	1.0019	1.006	1.3263	2	0	Median	2429500000	1177900000	1251600000	166530000	66434000	100090000	425110000	217710000	207400000	805310000	386160000	419150000	1032500000	507600000	524910000	33811	2266	31993	208382;208383;208384;208385;208386;208387;208388;208389;208390	281448;281449;281450;281451;281452;281453;281454;281455;281456;281457;281458	281448			11	
LRSDVIHAPLPSPVDK	1	Unmodified	1742.9679	0.9679186	2590	Q14BN4	SLMAP	Sarcolemmal membrane-associated protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				54.864	53.29	3	0.017606	43744	160511_QHF_FH_JSI9i_3	43.297	27.662			1.8366	1.5552	NaN	1	1	Median	1.8366	1.5552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11399000	3013300	8385600	11399000	3013300	8385600	0	0	0	0	0	0	0	0	0	33812	2590	31994	208391	281459	281459			1	
LRSEENE	0	Unmodified	875.39847	0.39847484	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	4.8598	4.5267	2	0.059559	2393	160511_QHF_FH_JSI11i_2	82.305	66.673			0.98701	1.025	7.6073	5	0	Median	1.1647	0.96888	NaN	1	0	Median	0.98701	1.1851	NaN	1	0	Median	1.024	1.0273	2.5559	2	0	Median	0.9236	1.025	NaN	1	0	Median	10649000000	5409300000	5239500000	1774800000	806620000	968200000	1785900000	910600000	875300000	5077700000	2560500000	2517100000	2010400000	1131500000	878930000	33813	2037	31995	208392;208393;208394;208395;208396	281460	281460			1	
LRSEIDNVKK	2	Unmodified	1200.6826	0.68263561	810;79	CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	2	By MS/MS				3	0			1							1				14.212	13.23	3	0.060518	10367	160511_QHF_FH_JSI9i_3	36.514	23.161		+	0.20165	0.15957	NaN	1	1	Median	0.20165	0.15957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30156000	24983000	5174000	30156000	24983000	5174000	0	0	0	0	0	0	0	0	0	33814	79;810	31996	208397	281461	281461			1	
LRSELEMVSGNVR	0	Unmodified	1488.7719	0.77186132	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			44.657	43.111	3	0.00088348	35928	160511_QHF_FH_JSI10i_3	51.643	31.805			1.0379	1.178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0379	1.178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38972000	20915000	18057000	0	0	0	38972000	20915000	18057000	0	0	0	0	0	0	33815	448	31997	208398;208399	281462;281463	281462			2	
LRSGEPQTFTLK	1	Unmodified	1375.746	0.74596415	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			36.601	35.143	3	0.00062494	28651	160511_QHF_FH_JSI9i_3	52.265	39.147			1.0693	1.0485	16.175	2	0	Median	1.1227	0.93514	NaN	1	0	Median	1.0183	1.1755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142030000	56319000	85706000	73424000	21559000	51865000	68602000	34761000	33841000	0	0	0	0	0	0	33816	841	31998	208400;208401	281464;281465	281465			2	
LRTAGPLESSETEEASQLK	1	Unmodified	2045.0277	0.027677899	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.308	43.752	3	0.0059943	36392	160511_QHF_FH_JSI10i_3	45.704	35.508			1.4337	1.6957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4337	1.6957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18722000	5653700	13068000	0	0	0	18722000	5653700	13068000	0	0	0	0	0	0	33817	5213	31999	208402;208403	281466;281467	281466			2	
LRTDAVLPLTVAEVQK	1	Unmodified	1752.0145	0.014534437	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	73.267	72.972	2	3.1911E-06	63202	160511_QHF_FH_JSI12i_3	91.936	55.977			0.76739	0.75643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76739	0.75643	NaN	1	1	Median	27204000	17471000	9733100	0	0	0	0	0	0	0	0	0	27204000	17471000	9733100	33818	2404	32000	208404;208405;208406	281468;281469;281470	281470			3	
LRTEQNER	0	Unmodified	1044.5312	0.53122035	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				4.8064	4.307	2	0.035721	2317	160511_QHF_FH_JSI9i_3	66.299	33.406			1.1618	0.93059	NaN	1	0	Median	1.1618	0.93059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173510000	66476000	107040000	173510000	66476000	107040000	0	0	0	0	0	0	0	0	0	33819	3328	32001	208407	281471	281471			1	
LRTETQNALK	1	Unmodified	1172.6513	0.65133548	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			26.278	25.975	3	0.055414	22769	160511_QHF_FH_JSI10i_1	24.855	14.025			2.7095	3.2168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.7095	3.2168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123890000	30921000	92970000	0	0	0	123890000	30921000	92970000	0	0	0	0	0	0	33820	1581	32002	208408	281472	281472			1	
LRTEVIQLEDTLAQVR	0	Unmodified	1883.0476	0.04762548	482;2988	O75150;Q5VTR2	RNF40;RNF20	E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A	no	no	0	0	0	1	By MS/MS				3	0			1							1				81.061	79.72	3	0.029278	65567	160511_QHF_FH_JSI9i_3	37.042	26.098			2.1906	1.8338	NaN	1	1	Median	2.1906	1.8338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14754000	4586700	10168000	14754000	4586700	10168000	0	0	0	0	0	0	0	0	0	33821	482;2988	32003	208409	281473	281473			1	
LRTFYEK	1	Unmodified	955.51272	0.51271674	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	22.545	21.911	3	0.005984	17827	160511_QHF_FH_JSI9i_3	63.48	44.749			1.0456	1.0067	26.702	4	0	Median	1.0672	0.85339	NaN	1	0	Median	0.92594	1.0505	NaN	1	0	Median	1.0245	0.96481	NaN	1	0	Median	1.5315	1.5804	NaN	1	0	Median	2314100000	1144600000	1169500000	602730000	298460000	304270000	708140000	417510000	290630000	890140000	385770000	504370000	113100000	42839000	70261000	33822	2018	32004	208410;208411;208412;208413	281474;281475;281476;281477;281478;281479	281478			6	
LRTNLQPLESTQSQDF	0	Unmodified	1875.9327	0.9326553	5492	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			63.624	62.115	2	1.491E-06	52078	160511_QHF_FH_JSI10i_3	137.16	131.05			1.4109	1.3584	8.7733	2	0	Median	1.7559	1.4454	NaN	1	0	Median	1.1337	1.2767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44362000	17088000	27274000	21360000	5977100	15383000	23002000	11111000	11891000	0	0	0	0	0	0	33823	5492	32005	208414;208415	281480;281481	281480			2	
LRVDPVNFK	1	Unmodified	1086.6186	0.61857879	49;2079	CON__P01966;P69905	HBA1	Hemoglobin subunit alpha	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	46.166	45.281	2;3	3.972E-05	37446	160511_QHF_FH_JSI9i_3	128.38	98.129		+	0.79179	0.72794	21.652	10	0	Median	0.80032	0.65635	3.5837	3	0	Plateau	0.56722	0.63304	9.4197	3	0	Plateau	1.1549	1.0833	3.1553	2	0	Median	0.88395	0.90578	4.8544	2	0	Median	11064000000	5776600000	5287800000	3167600000	1574200000	1593500000	3352500000	1913600000	1438900000	3135000000	1536500000	1598600000	1409300000	752400000	656890000	33824	49;2079	32006	208416;208417;208418;208419;208420;208421;208422;208423;208424;208425	281482;281483;281484;281485;281486;281487;281488;281489;281490;281491;281492;281493;281494;281495;281496;281497;281498;281499;281500;281501;281502;281503;281504;281505;281506;281507;281508;281509	281496			28	
LRVDQLK	1	Unmodified	870.5287	0.52870115	184	O14653	GOSR2	Golgi SNAP receptor complex member 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.03	25.721	3	0.023275	21308	160511_QHF_FH_JSI10i_3	36.395	10.011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33825	184	32007	208426	281510	281510			1	
LRVEFPR	0	Unmodified	915.52904	0.5290355	2376;2260	Q07955;Q13242	SRSF1;SRSF9	Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			42.256	40.715	3	0.0045563	34022	160511_QHF_FH_JSI10i_3	65.252	32.782			0.83732	0.79612	36.468	2	2	Median	0.75807	0.61516	NaN	1	1	Median	0.92486	1.0303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71124000	36406000	34718000	31209000	14679000	16531000	39915000	21728000	18187000	0	0	0	0	0	0	33826	2260;2376	32008	208427;208428	281511;281512	281511			2	
LRVEHEK	1	Unmodified	909.50321	0.50321468	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.7352	5.2122	3	0.058451	3230	160511_QHF_FH_JSI9i_3	30.687	6.5319			0.36303	0.29306	NaN	1	1	Median	0.36303	0.29306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	872020000	717720000	154300000	872020000	717720000	154300000	0	0	0	0	0	0	0	0	0	33827	1400	32009	208429	281513	281513			1	
LRVSGETDLSK	1	Unmodified	1203.6459	0.64591575	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		25.926	24.633	2;3	0.012203	20310	160511_QHF_FH_JSI10i_3	46.063	36.63			0.47242	0.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47242	0.5471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42325000	24318000	18007000	0	0	0	42325000	24318000	18007000	0	0	0	0	0	0	33828	193	32010	208430;208431	281514;281515	281515			2	
LRYEIDTGEETK	1	Unmodified	1452.7096	0.70963822	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	32.999	32.501	3	0.00012381	28271	160511_QHF_FH_JSI11i_3	74.649	60.391			1.5078	1.3946	26.368	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86757	0.99803	NaN	1	0	Median	1.5078	1.3946	NaN	1	0	Median	1.6457	1.6792	NaN	1	0	Median	212020000	96285000	115740000	0	0	0	61047000	30181000	30866000	114120000	48515000	65603000	36855000	17589000	19266000	33829	2291	32011	208432;208433;208434	281516;281517;281518;281519;281520	281518			4	
LSAAEEIQGDGPKK	2	Unmodified	1441.7413	0.7412727	3305	Q86TB9	PATL1	Protein PAT1 homolog 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	27.111	27.073	3	0.040245	22680	160511_QHF_FH_JSI12i_3	14.764	3.1502			0.94405	0.94995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94405	0.94995	NaN	1	0	Median	75584000	42668000	32916000	0	0	0	0	0	0	0	0	0	75584000	42668000	32916000	33830	3305	32012	208435	281521	281521			1	
LSAAQVLQHPWVQGQAPEK	1	Unmodified	2086.096	0.095972656	4437	Q9BUB5	MKNK1	MAP kinase-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			70.117	68.643	3	0.0038596	57489	160511_QHF_FH_JSI10i_3	45.916	29.973			0.66062	0.64465	8.0548	2	2	Median	0.72216	0.60896	NaN	1	1	Median	0.60432	0.68243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35153000	23728000	11425000	12012000	8660900	3351100	23141000	15067000	8073800	0	0	0	0	0	0	33831	4437	32013	208436;208437	281522;281523	281522			2	
LSAASTWLEDEGVGATTVMLK	1	Unmodified	2178.0878	0.087835314	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	3	3	98.423	98.259	2;3	3.2802E-28	86311	160511_QHF_FH_JSI11i_2	203.85	139.3			1.156	1.2475	20.389	9	8	Median	1.156	0.97505	NaN	1	1	Median	0.85209	1.0792	25.998	2	2	Median	1.259	1.206	14.542	3	2	Median	1.4603	1.2886	13.499	3	3	Plateau	424570000	188560000	236010000	50402000	20422000	29980000	52846000	28851000	23995000	203550000	92723000	110830000	117770000	46562000	71207000	33832	5633	32014	208438;208439;208440;208441;208442;208443;208444;208445;208446	281524;281525;281526;281527;281528;281529;281530;281531;281532;281533;281534	281529			11	
LSAAVTEAFVR	0	Unmodified	1162.6346	0.63462279	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	1	2	3	3	62.809	59.344	2	3.4655E-05	51113	160511_QHF_FH_JSI12i_3	98.048	77.423			0.99036	1.108	14.255	9	1	Median	1.1412	0.98299	NaN	1	0	Median	0.93305	1.1367	2.2607	2	1	Median	1.1286	1.1046	14.509	3	0	Plateau	1.0442	1.108	21.838	3	0	Median	2516300000	1134500000	1381800000	364110000	171540000	192570000	460850000	210120000	250730000	779120000	332170000	446950000	912180000	420640000	491540000	33833	1283	32015	208447;208448;208449;208450;208451;208452;208453;208454;208455	281535;281536;281537;281538;281539;281540;281541;281542;281543;281544;281545;281546;281547	281543			13	
LSAEAAEK	1	Unmodified	817.41815	0.41814765	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	13.392	8.4741	2	0.031057	8378	160511_QHF_FH_JSI12i_1	41.448	11.263			0.75843	0.79568	18.128	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0085	0.9809	NaN	1	0	Median	0.90525	0.95309	25.528	2	0	Median	617840000	312700000	305140000	0	0	0	0	0	0	11034000	4857800	6175900	606800000	307840000	298970000	33834	1410	32016	208456;208457;208458	281548;281549	281548			2	
LSAEELER	0	Unmodified	945.47673	0.47672516	5105	Q9NXE8	CWC25	Pre-mRNA-splicing factor CWC25 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.6626	5.3165	3	0.038193	3401	160511_QHF_FH_JSI12i_1	47.082	0			1.1648	1.1861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1648	1.1861	NaN	1	0	Median	84891000	43537000	41354000	0	0	0	0	0	0	0	0	0	84891000	43537000	41354000	33835	5105	32017	208459	281550	281550			0	
LSAEENPDDSEVPSSSGINSTK	1	Unmodified	2262.0135	0.013543977	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		41.733	41.389	2	1.66E-24	37353	160511_QHF_FH_JSI11i_1	186.43	145.7			1.118	1.0669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.118	1.0669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21597000	6618500	14978000	0	0	0	0	0	0	21597000	6618500	14978000	0	0	0	33836	5675	32018	208460;208461	281551;281552	281551			2	
LSAEEQAK	1	Unmodified	874.43961	0.43961137	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.6809	8.4413	2	0.037328	6099	160511_QHF_FH_JSI11i_1	40.067	13.962			0.80979	0.9545	28.582	3	1	Median	NaN	NaN	NaN	0	0	Median	0.80979	0.9545	NaN	1	0	Median	1.159	1.1249	NaN	1	0	Median	0.60709	0.64492	NaN	1	1	Median	303350000	172240000	131110000	0	0	0	113370000	61437000	51936000	98657000	52165000	46492000	91316000	58637000	32680000	33837	4247	32019	208462;208463;208464	281553;281554	281553			2	
LSAETLQQVNR	0	Unmodified	1257.6677	0.66771383	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.318	38.36	2	1.4134E-05	33704	160511_QHF_FH_JSI10i_2	106.18	76.103			0.9858	1.093	5.6955	4	0	Median	1.4141	1.197	NaN	1	0	Median	0.92076	1.1089	NaN	1	0	Median	1.0554	1.0773	NaN	1	0	Median	0.91266	1.0492	NaN	1	0	Median	244950000	127250000	117700000	52500000	24992000	27507000	50725000	28732000	21992000	75706000	40135000	35571000	66023000	33393000	32630000	33838	5694	32020	208465;208466;208467;208468	281555;281556;281557;281558;281559;281560;281561	281561			7	
LSAFAFK	1	Unmodified	782.43268	0.4326755	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	52.87	52.319	2	0.029275	44911	160511_QHF_FH_JSI12i_3	52.683	35.756			1.3052	1.2034	5.2007	4	0	Median	1.3395	1.1553	NaN	1	0	Median	0.91784	1.1402	NaN	1	0	Median	1.3516	1.2569	NaN	1	0	Median	1.2717	1.2535	NaN	1	0	Median	276900000	131460000	145440000	19747000	8092000	11655000	27954000	12923000	15030000	102660000	46375000	56283000	126540000	64069000	62470000	33839	560	32021	208469;208470;208471;208472	281562;281563	281563			2	
LSAIYGGTYMLNK	1	Unmodified	1429.7275	0.72753689	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	68.833	65.176	2	8.1893E-20	34989	160513_QHF_FH_JSI11Kac_6	152.69	97.629			0.99899	1.0855	21.891	11	4	Median	1.3789	1.1786	9.0574	2	0	Median	0.99899	1.2399	26.303	3	1	Median	1.1493	1.0855	20.425	3	1	Median	0.89548	0.8976	11.97	3	2	Median	496090000	245870000	250220000	82274000	42962000	39312000	132070000	65135000	66932000	156400000	70076000	86328000	125350000	67697000	57649000	33840	1702;1368	32022	208473;208474;208475;208476;208477;208478;208479;208480;208481;208482;208483	281564;281565;281566;281567;281568;281569;281570;281571;281572;281573;281574;281575;281576;281577;281578;281579	281569			16	
LSAIYGGTYMLNKPIEEIIVQNGK	2	Oxidation (M)	2666.3989	0.39893912	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	90.798	90.341	3;4	7.4738E-09	78210	160511_QHF_FH_JSI12i_3	83.063	67.582			0.91264	0.84072	14.237	5	0	Median	1.2105	0.99867	NaN	1	0	Median	0.93109	1.1255	NaN	1	0	Median	0.91264	0.84044	NaN	1	0	Median	0.82772	0.8231	2.9967	2	0	Median	428180000	215190000	212990000	40775000	17241000	23534000	89113000	47479000	41634000	137210000	60902000	76311000	161080000	89566000	71512000	33841	1702	32023	208484;208485;208486;208487;208488	281580;281581;281582;281583;281584;281585;281586;281587;281588;281589	281587		1378	10	
LSAIYGGTYMLNKPIEEIIVQNGK	2	Unmodified	2650.404	0.4040245	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	3	4	3	4	96.384	93.948	3;4	6.0723E-63	82661	160511_QHF_FH_JSI10i_3	220.63	213.6			0.89507	0.89613	18.825	14	1	Median	1.163	0.98684	11.244	3	0	Median	0.78499	0.9201	6.4988	4	1	Median	0.94501	0.88995	10.65	3	0	Median	0.599	0.58842	35.661	4	0	Linear	3345000000	1589900000	1755200000	519450000	243870000	275570000	887390000	438170000	449220000	1177500000	528430000	649030000	760750000	379390000	381360000	33842	1702	32023	208489;208490;208491;208492;208493;208494;208495;208496;208497;208498;208499;208500;208501;208502	281590;281591;281592;281593;281594;281595;281596;281597;281598;281599;281600;281601;281602;281603;281604;281605;281606;281607;281608;281609;281610;281611;281612;281613;281614;281615;281616;281617;281618;281619;281620	281593			31	
LSAIYGGTYMLNKPVDDIIMENGK	2	Unmodified	2641.3132	0.31316058	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		93.865	93.477	3;4	2.6368E-05	82861	160511_QHF_FH_JSI10i_2	56.766	38.047			0.97638	0.47164	71.817	4	2	Linear	0.31657	0.2786	NaN	1	1	Median	0.49969	0.58551	99.019	2	1	Median	0.82688	0.76519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	264860000	210070000	54792000	128710000	110140000	18572000	115930000	91364000	24569000	20220000	8569000	11651000	0	0	0	33843	1368	32024	208503;208504;208505;208506	281621;281622;281623;281624	281624			3	
LSAIYGGTYMLNKPVDDIIMENGK	2	Oxidation (M)	2657.3081	0.3080752	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	85.124	84.952	3	8.3234E-05	73754	160511_QHF_FH_JSI12i_3	52.909	45.376			0.57059	0.59333	39.684	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57059	0.59333	39.684	2	2	Median	41938000	25158000	16781000	0	0	0	0	0	0	0	0	0	41938000	25158000	16781000	33844	1368	32024	208507;208508	281625;281626	281625		1001	2	
LSAKPPAK	2	Unmodified	810.49634	0.49633839	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	9.567	9.3943	2;3	0.032117	6940	160511_QHF_FH_JSI11i_3	36.557	5.2674			1.0237	1.0471	25.881	4	0	Median	1.0842	0.89713	NaN	1	0	Median	0.95631	1.1203	NaN	1	0	Median	1.6652	1.6141	NaN	1	0	Median	0.96663	0.97869	NaN	1	0	Median	3834300000	832920000	3001400000	319440000	156060000	163380000	265450000	156590000	108860000	1516600000	186340000	1330200000	1732800000	333940000	1398900000	33845	825	32025	208509;208510;208511;208512;208513;208514	281627;281628;281629	281627			3	
LSALALLSLLPSDNSVIQDK	1	Unmodified	2096.1729	0.17288557	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7.33	6.13			8						4	3	3	4	2	101.23	98.376	2;3	1.8861E-99	91776	160511_QHF_FH_JSI11i_3	256.81	244.45			1.0745	0.96386	9.921	12	0	Median	1.1347	0.96825	4.7781	3	0	Plateau	0.71056	0.83474	5.6374	3	0	Median	1.1468	1.0631	5.7617	4	0	Median	0.99321	0.98008	3.0016	2	0	Median	997750000	498890000	498860000	163730000	87197000	76531000	179240000	101360000	77876000	534760000	251580000	283180000	120030000	58745000	61280000	33846	5323	32026	208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526	281630;281631;281632;281633;281634;281635;281636;281637;281638;281639;281640;281641;281642;281643;281644;281645;281646;281647	281632			18	
LSALAPLFGSLK	1	Unmodified	1215.7227	0.72270951	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	95.66	95.22	2	0.00019599	79372	160511_QHF_FH_JSI10i_3	80.763	69.934			1.0268	1.0418	8.3983	4	0	Linear	1.0757	0.88718	NaN	1	0	Median	0.72362	0.85176	NaN	1	0	Median	1.0133	0.96229	NaN	1	0	Median	1.0405	1.0281	NaN	1	0	Median	105260000	47879000	57382000	21055000	7425000	13630000	16066000	8973300	7092900	24901000	12290000	12611000	43238000	19191000	24048000	33847	3454	32027	208527;208528;208529;208530	281648;281649;281650	281649			3	
LSALFINLISDPSR	0	Unmodified	1544.8562	0.85624288	3743	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		91.989	84.443	2	5.8192E-06	48887	160513_QHF_FH_JSI10Kac_6	121.28	72.539			1.0039	1.0831	7.8039	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85384	1.0249	NaN	1	1	Median	1.1804	1.1445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	164310000	76499000	87812000	0	0	0	94630000	44884000	49746000	69681000	31615000	38065000	0	0	0	33848	3743	32028	208531;208532;208533	281651;281652;281653;281654	281654			4	
LSALFSSSQK	1	Unmodified	1066.5659	0.56587452	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	40.956	40.567	2	0.00099416	33897	160511_QHF_FH_JSI10i_3	79.148	52.546			0.82168	0.95087	49.376	5	4	Median	NaN	NaN	NaN	0	0	Median	0.82168	0.95087	NaN	1	0	Median	0.86128	0.8138	79.783	2	2	Median	0.88906	0.91606	56.322	2	2	Median	522450000	265950000	256500000	0	0	0	65677000	35127000	30551000	179070000	92988000	86085000	277700000	137840000	139870000	33849	2574	32029	208534;208535;208536;208537;208538	281655;281656;281657;281658;281659	281657			5	
LSALHLEVR	0	Unmodified	1036.6029	0.60292873	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	48.135	44.219	3	4.0873E-05	37473	160511_QHF_FH_JSI12i_3	78.655	30.564			1.1751	1.0585	31.811	11	1	Median	1.2599	1.0769	11.241	2	0	Median	1.1826	1.3357	28.296	3	1	Median	1.1211	1.0585	44.612	3	0	Median	0.9146	0.93681	38.646	3	0	Median	1293400000	584590000	708820000	120250000	47311000	72937000	312030000	133090000	178940000	366600000	171220000	195380000	494540000	232970000	261570000	33850	5378	32030	208539;208540;208541;208542;208543;208544;208545;208546;208547;208548;208549	281660;281661;281662;281663;281664;281665;281666;281667;281668	281667			9	
LSALHPPEK	1	Unmodified	990.54983	0.54983053	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	23.184	22.563	3	0.0032405	19264	160511_QHF_FH_JSI9i_2	40.715	31.852			0.89809	0.81751	14.239	3	0	Plateau	1.0329	0.93395	NaN	1	0	Median	0.89809	1.0867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8046	0.81751	NaN	1	0	Median	238390000	120280000	118110000	47297000	23171000	24125000	42197000	24544000	17653000	0	0	0	148890000	72562000	76332000	33851	899	32031	208550;208551;208552;208553;208554	281669;281670;281671;281672;281673;281674;281675;281676	281670			8	
LSALLFK	1	Unmodified	790.49528	0.49527576	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.164	62.164	2	0.032473	55310	160511_QHF_FH_JSI11i_3	52.683	0			0.80439	0.72966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80439	0.72966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39576000	19790000	19786000	0	0	0	0	0	0	39576000	19790000	19786000	0	0	0	33852	2311	32032	208555	281677	281677			1	
LSALLQETK	1	Unmodified	1001.5757	0.57571092	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.515	39.554	2	0.00085786	33863	160511_QHF_FH_JSI12i_2	84.213	58.107			2.6994	2.7369	25.235	4	4	Median	3.2098	2.7458	NaN	1	1	Median	2.2701	2.7281	NaN	1	1	Median	3.2483	3.3022	NaN	1	1	Median	1.6127	1.8163	NaN	1	1	Median	360340000	143550000	216790000	66175000	19866000	46308000	74259000	34457000	39802000	126750000	50938000	75816000	93153000	38293000	54861000	33853	446	32033	208556;208557;208558;208559	281678;281679;281680;281681	281678			4	
LSALYALWSLSR	0	Unmodified	1378.7609	0.76088593	269	O15254	ACOX3	Peroxisomal acyl-coenzyme A oxidase 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.364	86.643	2	0.020039	49600	160513_QHF_FH_JSI10Kac_6	62.271	42.037			0.83022	0.99005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83022	0.99005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97810000	53104000	44706000	0	0	0	97810000	53104000	44706000	0	0	0	0	0	0	33854	269	32034	208560	281682	281682			1	
LSAMLVPVTPEVKPK	2	Unmodified	1607.9321	0.93205036	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	67.316	66.872	2;3	0.00035378	58774	160511_QHF_FH_JSI9i_2	64.04	59.542			0.85221	0.87363	28.201	4	4	Median	NaN	NaN	NaN	0	0	Median	0.83885	0.93587	NaN	1	1	Median	0.70045	0.65919	35.899	2	2	Median	0.86578	0.89826	NaN	1	1	Median	886010000	425230000	460780000	0	0	0	39588000	21424000	18163000	330960000	148310000	182650000	515460000	255490000	259970000	33855	2116	32035	208561;208562;208563;208564;208565;208566;208567	281683;281684;281685;281686;281687;281688;281689	281686			7	
LSAMMGAVAEK	1	Unmodified	1106.5464	0.54640141	3316	Q86U44	METTL3	N6-adenosine-methyltransferase 70 kDa subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.906	42.525	2	0.019891	36439	160511_QHF_FH_JSI12i_2	49.466	34.951			0.47573	0.54595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47573	0.54595	NaN	1	1	Median	47537000	34250000	13287000	0	0	0	0	0	0	0	0	0	47537000	34250000	13287000	33856	3316	32036	208568	281690	281690			1	
LSANQQNILK	1	Unmodified	1127.6299	0.62987176	1890	P57088	TMEM33	Transmembrane protein 33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	4.44	4	5	2				2			1	1	4	7	34.731	32.653	2;3	1.1183E-05	29114	160511_QHF_FH_JSI9i_2	103.88	63.811			0.87397	0.95754	59.134	13	6	Median	0.87397	0.74249	NaN	1	0	Median	0.86127	1.0356	NaN	1	0	Median	0.88747	0.88428	66.669	4	2	Median	1.1936	1.1969	66.069	7	4	Median	1952100000	1171200000	780840000	159290000	78372000	80922000	147190000	95285000	51903000	801410000	508800000	292610000	844180000	488770000	355410000	33857	1890	32037	208569;208570;208571;208572;208573;208574;208575;208576;208577;208578;208579;208580;208581	281691;281692;281693;281694;281695;281696;281697;281698;281699;281700;281701;281702;281703	281698			12	
LSAPVTYTK	1	Unmodified	978.5386	0.53859714	5736	Q9Y6M0	PRSS21	Testisin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	35.463	34.756	2	0.0012639	31061	160511_QHF_FH_JSI10i_1	69.812	44.889			1.0589	1.0471	12.811	7	0	Median	1.2294	1.0407	NaN	1	0	Median	0.95945	1.1374	11.695	2	0	Median	1.1634	1.159	18.619	2	0	Median	1.0642	1.1576	20.235	2	0	Median	1019500000	465690000	553840000	94732000	42370000	52362000	321280000	149760000	171520000	352660000	159430000	193230000	250850000	114130000	136720000	33858	5736	32038	208582;208583;208584;208585;208586;208587;208588	281704;281705;281706;281707	281706			4	
LSAQAQVAEDILDK	1	Unmodified	1499.7831	0.78313752	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		68.591	68.246	2	1.3605E-10	61799	160511_QHF_FH_JSI10i_1	114.56	92.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33859	2591	32039	208589;208590	281708;281709	281709			2	
LSAQGQAISVVGSLSSMSPLEEEAPQAK	1	Unmodified	2813.4117	0.41168865	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	99.404	99.235	3	0.01058	89967	160511_QHF_FH_JSI12i_1	29.317	22.442			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33860	3888	32040	208591	281710	281710			1	
LSAQKDLEQK	2	Acetyl (K)	1200.635	0.63501672	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	37.327	28.752	2	0.0057726	16414	160513_QHF_FH_JSI12Kac_3	66.595	38.421			1.5055	1.6431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5055	1.6431	NaN	1	0	Median	6914000	2813500	4100500	0	0	0	0	0	0	0	0	0	6914000	2813500	4100500	33861	5412	32041	208592	281711	281711	3403		1	
LSASLLHSHDTETR	0	Unmodified	1565.7798	0.77978347	4865	Q9HCU5	PREB	Prolactin regulatory element-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			27.211	25.879	3	0.001054	21030	160511_QHF_FH_JSI9i_3	44.807	38.531			1.0697	1.0302	16.64	2	0	Median	1.1158	0.91585	NaN	1	0	Median	1.0256	1.1588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47432000	19709000	27723000	27505000	9954500	17551000	19927000	9754900	10172000	0	0	0	0	0	0	33862	4865	32042	208593;208594	281712;281713	281713			2	
LSASSLTMESFAFLWAGGR	0	Unmodified	2029.9931	0.99314707	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.62		4	2	5	1				11	5	7	7	4	99.058	92.803	2;3	0	48260	160513_QHF_FH_JSI12Kac_6	375.22	338.29			1.1133	1.0336	20.501	21	2	Median	1.2367	1.0455	9.8563	4	1	Median	0.97962	1.1513	20.304	6	0	Median	1.1586	1.0947	26.878	7	1	Median	0.89468	0.94953	15.08	4	0	Median	5444100000	2745300000	2698900000	1459300000	711940000	747360000	1442700000	785270000	657410000	1619300000	762040000	857290000	922800000	486010000	436800000	33863	2161	32043	208595;208596;208597;208598;208599;208600;208601;208602;208603;208604;208605;208606;208607;208608;208609;208610;208611;208612;208613;208614;208615;208616;208617	281714;281715;281716;281717;281718;281719;281720;281721;281722;281723;281724;281725;281726;281727;281728;281729;281730;281731;281732;281733;281734;281735;281736;281737;281738;281739;281740;281741	281735			28	
LSASSLTMESFAFLWAGGR	0	Oxidation (M)	2045.9881	0.98806169	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	12.2	2.17				3					1		1	2	1	96.183	87.052	2;3	6.5171E-177	46900	160513_QHF_FH_JSI12Kac_6	287.96	258.15			0.79148	0.80117	16.624	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90411	1.0234	NaN	1	1	Median	0.76844	0.7472	12.218	2	0	Median	0.74271	0.78793	NaN	1	0	Median	352950000	216050000	136900000	0	0	0	2723600	1605900	1117700	9119700	5357000	3762700	341110000	209080000	132020000	33864	2161	32043	208618;208619;208620;208621	281742;281743;281744;281745;281746;281747	281747		1811	6	
LSASSSISSADLFEEPR	0	Unmodified	1794.8636	0.86357268	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		69.945	69.558	2	0.06066	63263	160511_QHF_FH_JSI11i_1	40.066	23.489			0.6467	0.61991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6467	0.61991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11320000	7131000	4188500	0	0	0	0	0	0	11320000	7131000	4188500	0	0	0	33865	4881	32044	208622	281748	281748			1	
LSAYSLGGFAAEWLSQEYFHR	0	Unmodified	2431.1597	0.15969512	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	96.931	87.506	3	2.1525E-13	49864	160513_QHF_FH_JSI11Kac_6	103.2	95.302			1.1511	1.1622	57.119	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8078	1.7406	NaN	1	0	Median	0.73293	0.77602	NaN	1	0	Median	118030000	55244000	62786000	0	0	0	0	0	0	71307000	28839000	42468000	46723000	26405000	20318000	33866	3009	32045	208623;208624	281749	281749			0	
LSAYVSYGGLLMR	0	Unmodified	1428.7435	0.74352131	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.57	6.43			4						3	2	3	1	1	80.307	76.322	2	1.3368E-12	40603	160513_QHF_FH_JSI10Kac_6	154.24	124.5			0.96157	0.98886	29.771	7	3	Median	1.2305	1.0455	52.439	2	1	Median	0.8477	0.98886	25.181	3	2	Median	1.4413	1.3872	NaN	1	0	Median	0.96157	0.92706	NaN	1	0	Median	638850000	318910000	319940000	54587000	17974000	36613000	493280000	256600000	236690000	46520000	22053000	24467000	44464000	22291000	22172000	33867	1771	32046	208625;208626;208627;208628;208629;208630;208631	281750;281751;281752;281753;281754;281755	281755			6	
LSCAYSGFSSPR	0	Unmodified	1330.5976	0.59758535	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	39.784	39.007	2	0.00075108	34242	160511_QHF_FH_JSI11i_3	78.655	68.132			1.1439	1.0959	30.796	3	1	Median	NaN	NaN	NaN	0	0	Median	0.70256	0.86732	NaN	1	0	Median	1.1439	1.0959	NaN	1	1	Median	1.4425	1.5969	NaN	1	0	Median	80140000	38282000	41858000	0	0	0	28901000	14688000	14213000	30168000	14147000	16021000	21071000	9446500	11625000	33868	5701	32047	208632;208633;208634;208635	281756;281757;281758	281756			3	
LSCFAQTVSPAEK	1	Unmodified	1436.697	0.69696505	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.23	2	5	2				3			1	2	5	4	45.32	42.204	2;3	3.3373E-15	36194	160511_QHF_FH_JSI11i_2	157.68	137.89			0.82262	0.83629	47.612	12	6	Median	1.0054	0.83747	NaN	1	0	Median	0.80091	0.96363	20.243	2	1	Median	0.69095	0.63964	28.061	5	3	Median	1.0135	1.0548	80.185	4	2	Median	1148700000	646400000	502320000	63447000	39462000	23985000	90269000	53708000	36561000	802840000	468420000	334420000	192170000	84812000	107360000	33869	2751	32048	208636;208637;208638;208639;208640;208641;208642;208643;208644;208645;208646;208647	281759;281760;281761;281762;281763;281764;281765;281766;281767;281768;281769;281770;281771;281772;281773;281774	281768			16	
LSCVPVLIFANK	1	Unmodified	1359.7584	0.75844309	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	88.569	88.192	2;3	2.3136E-07	78627	160511_QHF_FH_JSI11i_3	131.44	103.23			0.9294	1.0941	46.702	5	1	Median	NaN	NaN	NaN	0	0	Median	0.9294	1.0941	NaN	1	0	Median	0.79569	0.75895	17.913	2	0	Median	1.6237	1.6897	44.581	2	1	Median	130310000	64222000	66093000	0	0	0	17328000	8666100	8662200	43680000	22064000	21616000	69307000	33492000	35815000	33870	1451	32049	208648;208649;208650;208651;208652	281775;281776;281777;281778	281775			4	
LSDADLAGPLQK	1	Unmodified	1226.6507	0.65066678	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	53.314	52.647	2;3	1.7621E-07	47383	160511_QHF_FH_JSI10i_1	133.81	106.5			0.9134	0.93014	7.6065	4	0	Median	1.1073	0.92423	NaN	1	0	Median	0.87222	1.0279	NaN	1	0	Median	0.95652	0.93608	NaN	1	0	Median	0.80839	0.85381	NaN	1	0	Median	894500000	449860000	444640000	205540000	91659000	113890000	215190000	124730000	90456000	255550000	133280000	122270000	218220000	100190000	118020000	33871	2605	32050	208653;208654;208655;208656;208657	281779;281780;281781;281782;281783;281784;281785;281786;281787	281785			9	
LSDALAVEDDQVAPVPLNVVETSSSVR	0	Unmodified	2809.4345	0.43453258	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	96.66	96.491	2;3	2.8808E-14	87412	160511_QHF_FH_JSI10i_1	90.974	84.908			1.4983	1.2672	12.69	3	1	Median	1.4983	1.2128	NaN	1	1	Median	1.0807	1.2672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5037	1.5393	NaN	1	0	Median	203360000	95271000	108080000	18724000	5887600	12836000	115870000	55867000	60002000	0	0	0	68763000	33516000	35247000	33872	3328	32051	208658;208659;208660;208661;208662	281788;281789;281790;281791;281792;281793;281794	281791			7	
LSDAQIYVDK	1	Unmodified	1150.587	0.58700389	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		40.485	39.842	2	0.0019779	35844	160511_QHF_FH_JSI11i_1	62.633	43.857			0.73381	0.81679	16.883	3	0	Plateau	0.73381	0.59553	NaN	1	0	Median	0.64058	0.76218	NaN	1	0	Median	0.84131	0.8226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203500000	112800000	90696000	42787000	24995000	17792000	75056000	44850000	30206000	85652000	42954000	42698000	0	0	0	33873	213	32052	208663;208664;208665	281795;281796;281797	281795			3	
LSDESIFSAFLSVVGK	1	Unmodified	1697.8876	0.88760259	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		2	4						8	3	2	5	4	100.86	96.03	2;3	2.2661E-69	49451	160513_QHF_FH_JSI12Kac_6	257.19	213.24			0.95318	0.90903	20.625	14	4	Median	1.1238	0.9471	4.8376	3	0	Median	0.96128	1.1265	39.297	2	0	Median	0.95819	0.92086	21.142	5	2	Median	0.83014	0.85953	15.32	4	2	Median	1369200000	748130000	621060000	230020000	113450000	116570000	229340000	130770000	98578000	375710000	203790000	171920000	534130000	300130000	233990000	33874	2605	32053	208666;208667;208668;208669;208670;208671;208672;208673;208674;208675;208676;208677;208678;208679	281798;281799;281800;281801;281802;281803;281804;281805;281806;281807;281808;281809;281810;281811;281812;281813;281814;281815;281816;281817;281818	281815			21	
LSDFFKTHYR	1	Acetyl (K)	1354.667	0.66698555	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									3		1	2		60.231	50.936	2;3	0.0016595	27663	160513_QHF_FH_JSI11Kac_6	60.641	51.319			0.29871	0.29921	101.78	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3265	1.5763	NaN	1	0	Median	0.28128	0.27246	13.245	2	1	Median	NaN	NaN	NaN	0	0	Median	88106000	63932000	24174000	0	0	0	17943000	6988400	10955000	70163000	56943000	13220000	0	0	0	33875	2277	32054	208680;208681;208682	281819;281820	281819	2372		2	
LSDFNDITNMLLLK	1	Unmodified	1635.8542	0.85419397	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.866	3		1							1	1	1	1	101.82	101.72	2	2.0091E-07	92457	160511_QHF_FH_JSI11i_1	176.51	119.96			0.98636	1.288	43.525	4	4	Linear	0.58721	0.4772	NaN	1	1	Median	1.0769	1.2638	NaN	1	1	Median	1.1488	1.1279	NaN	1	1	Median	0.90342	0.91511	NaN	1	1	Median	680020000	322410000	357610000	81783000	49615000	32168000	235410000	100210000	135200000	184320000	75244000	109070000	178510000	97338000	81172000	33876	2094	32055	208683;208684;208685;208686	281821;281822;281823;281824	281821			4	
LSDFTESLK	1	Unmodified	1038.5233	0.523341	5244	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.197	41.98	2	0.05175	37223	160511_QHF_FH_JSI9i_1	35.438	7.2639			0.64504	0.52851	NaN	1	0	Median	0.64504	0.52851	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70179000	42143000	28037000	70179000	42143000	28037000	0	0	0	0	0	0	0	0	0	33877	5244	32056	208687	281825	281825			1	
LSDGEINAQESTYK	1	Unmodified	1553.7209	0.72093119	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.628	34.042	2	0.0013515	30792	160511_QHF_FH_JSI12i_1	60.255	41.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33878	2791	32057	208688	281826	281826			1	
LSDGFNGADLR	0	Unmodified	1163.5571	0.55710075	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	43.317	42.526	2	4.8549E-05	37263	160511_QHF_FH_JSI9i_2	103.26	84.473			0.99631	1.0457	8.6116	7	2	Median	1.1799	0.98921	16.002	2	1	Median	0.84005	1.0209	NaN	1	0	Median	1.0646	1.0378	12.137	2	1	Median	0.96273	1.051	0.71749	2	0	Median	1392900000	658260000	734640000	267260000	112720000	154540000	286110000	152240000	133870000	540460000	247960000	292490000	299070000	145340000	153730000	33879	2006	32058	208689;208690;208691;208692;208693;208694;208695	281827;281828;281829;281830;281831;281832;281833	281832			7	
LSDGGLLLSYDGSSYTTYMK	1	Unmodified	2170.014	0.014001669	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	88.376	88.086	2	4.7057E-14	80193	160511_QHF_FH_JSI12i_1	142.85	112.41			0.70859	0.77363	11.36	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71028	0.83833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7069	0.71392	NaN	1	1	Median	24801000	16087000	8713800	0	0	0	15306000	8958800	6347000	0	0	0	9495400	7128600	2366800	33880	2348	32059	208696;208697;208698	281834;281835;281836	281834			3	
LSDGIGVMLPQVLK	1	Unmodified	1468.8323	0.83233632	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							3	2	3	2	95.018	94.64	2	3.4375E-06	81578	160511_QHF_FH_JSI12i_2	132.25	121.5			0.99676	1.1132	12.586	9	7	Median	1.0807	0.91677	19.496	3	3	Plateau	0.93761	1.1225	1.176	2	2	Median	1.1671	1.1528	2.8965	2	0	Median	0.87772	0.9875	10.606	2	2	Median	274910000	144920000	129990000	57926000	30806000	27120000	52382000	26041000	26341000	70125000	39075000	31050000	94479000	49003000	45477000	33881	1778	32060	208699;208700;208701;208702;208703;208704;208705;208706;208707;208708	281837;281838;281839;281840;281841;281842;281843;281844;281845;281846;281847	281839			11	
LSDGIRK	1	Unmodified	787.4552	0.45520186	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				8.8152	8.339	2	0.039708	6119	160511_QHF_FH_JSI9i_2	47.849	11.148			0.74867	0.63301	NaN	1	0	Median	0.74867	0.63301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215120000	102600000	112520000	215120000	102600000	112520000	0	0	0	0	0	0	0	0	0	33882	1471	32061	208709	281848	281848			1	
LSDGQGFTQDDIQAGR	0	Unmodified	1706.786	0.78599106	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.929	41.471	2	2.2024E-15	37489	160511_QHF_FH_JSI11i_1	164.81	146.07			1.0363	1.0714	10.147	3	2	Median	NaN	NaN	NaN	0	0	Median	0.78991	0.95721	NaN	1	1	Median	1.2603	1.1721	NaN	1	0	Median	1.0363	1.0714	NaN	1	1	Median	222850000	131910000	90938000	0	0	0	80823000	49736000	31087000	69234000	38445000	30789000	72790000	43727000	29062000	33883	3146	32062	208710;208711;208712	281849;281850;281851;281852	281850			4	
LSDGVAVLK	1	Unmodified	900.52803	0.52803245	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.14	4	4	3				2	4		3	5	5	4	43.54	39.386	2	9.3602E-05	35558	160511_QHF_FH_JSI11i_1	94.302	58.422			0.96104	1.0184	17.488	17	0	Median	1.3741	1.1745	42.503	3	0	Median	0.81252	0.9686	9.3218	5	0	Median	1.0692	1.055	7.8774	5	0	Median	0.92263	1.0215	11.106	4	0	Median	24771000000	12446000000	12325000000	3909500000	1739200000	2170300000	6733000000	3677300000	3055600000	7778600000	3828900000	3949800000	6349600000	3200400000	3149200000	33884	980	32063	208713;208714;208715;208716;208717;208718;208719;208720;208721;208722;208723;208724;208725;208726;208727;208728;208729	281853;281854;281855;281856;281857;281858;281859;281860;281861;281862;281863;281864;281865;281866;281867;281868;281869;281870;281871;281872;281873;281874;281875;281876;281877;281878;281879;281880;281881;281882;281883;281884;281885	281855			33	
LSDIGEGIREVTVK	1	Unmodified	1514.8304	0.83042206	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	55.308	55.066	3	0.06163	47275	160511_QHF_FH_JSI12i_3	17.489	3.459			1.1887	1.2513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1887	1.2513	NaN	1	0	Median	58138000	29491000	28648000	0	0	0	0	0	0	0	0	0	58138000	29491000	28648000	33885	991	32064	208730	281886	281886			1	
LSDIPEGK	1	Unmodified	857.44945	0.44944778	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	22.402	22.007	2	0.037328	19258	160511_QHF_FH_JSI12i_1	40.067	31.245			0.85156	0.95547	5.7165	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84022	0.99488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86306	0.91762	NaN	1	0	Median	1857800000	970930000	886850000	0	0	0	845820000	406850000	438970000	0	0	0	1012000000	564070000	447880000	33886	1611	32065	208731;208732	281887	281887			1	
LSDLDSETR	0	Unmodified	1034.488	0.48801813	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	22.325	18.829	2	0.00026574	16544	160511_QHF_FH_JSI12i_1	83.948	65.165			0.81995	0.7898	27.261	7	0	Median	0.98638	0.81392	NaN	1	0	Median	0.52814	0.62059	29.848	2	0	Median	0.97317	0.94919	25.998	2	0	Median	0.86539	0.9312	24.246	2	0	Median	3179200000	1858300000	1320900000	743540000	413440000	330110000	1036600000	650030000	386550000	593280000	338230000	255050000	805830000	456650000	349180000	33887	5497	32066	208733;208734;208735;208736;208737;208738;208739	281888;281889;281890;281891;281892;281893;281894;281895;281896	281890			9	
LSDLDYMQFIR	0	Unmodified	1399.6806	0.6805867	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	89.042	88.435	2	3.7567E-05	76401	160511_QHF_FH_JSI12i_2	97.565	62.054			1.0188	1.1359	7.0112	4	0	Median	1.4366	1.2386	NaN	1	0	Median	0.94769	1.1536	NaN	1	0	Median	1.0916	1.1186	NaN	1	0	Median	0.95083	1.0461	NaN	1	0	Median	273440000	131930000	141500000	58951000	21642000	37309000	58065000	33171000	24895000	96387000	45389000	50998000	60033000	31731000	28302000	33888	2115	32067	208740;208741;208742;208743	281897;281898;281899	281898			3	
LSDLDYMQFIR	0	Oxidation (M)	1415.6755	0.67550132	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		70.832	61.789	2	0.05234	33343	160513_QHF_FH_JSI11Kac_6	34.387	12.394			1.0338	0.95805	13.05	2	0	Median	0.99932	0.8736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0695	1.0507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75689000	35402000	40287000	36581000	16086000	20495000	0	0	0	39108000	19316000	19792000	0	0	0	33889	2115	32067	208744;208745	281900	281900			1	
LSDLLAPISEQIK	1	Unmodified	1425.8079	0.80789571	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.714	9	8	3							5	5	5	5	83.248	82.615	2;3	2.3198E-05	73576	160511_QHF_FH_JSI9i_1	94.122	80.092			1.0319	1.0152	15.149	20	5	Median	1.2902	1.0673	12.386	5	1	Median	0.77324	0.91519	7.4785	5	0	Median	1.0575	1.0395	13.828	5	1	Median	0.99593	1.0648	21.193	5	3	Median	3491800000	1699100000	1792700000	754330000	345970000	408360000	949900000	525330000	424570000	987820000	444770000	543050000	799760000	383080000	416690000	33890	2169	32068	208746;208747;208748;208749;208750;208751;208752;208753;208754;208755;208756;208757;208758;208759;208760;208761;208762;208763;208764;208765	281901;281902;281903;281904;281905;281906;281907;281908;281909;281910;281911;281912;281913;281914;281915;281916;281917;281918;281919;281920;281921;281922;281923;281924;281925;281926;281927;281928;281929;281930;281931;281932;281933;281934;281935;281936	281925			36	
LSDLLDWK	1	Unmodified	988.52295	0.52294707	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	73.692	72.742	2	0.010794	62758	160511_QHF_FH_JSI12i_2	54.776	27.98			0.85782	0.92718	9.6964	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94982	0.99298	NaN	1	0	Median	0.77473	0.86574	NaN	1	0	Median	142300000	80686000	61612000	0	0	0	0	0	0	78165000	37520000	40645000	64133000	43166000	20967000	33891	1042	32069	208766;208767	281937;281938	281937			2	
LSDLVNTAILIALNK	1	Unmodified	1596.9451	0.94505789	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	1	2	3	102.1	102.04	2;3	3.7788E-17	82832	160511_QHF_FH_JSI9i_3	122.64	109.5			0.75715	0.62129	30.701	5	5	Median	0.75715	0.62129	NaN	1	1	Median	0.77501	0.88309	NaN	1	1	Median	0.61517	0.58054	NaN	1	1	Median	0.72817	0.74443	51.643	2	2	Median	601350000	358470000	242880000	22920000	13218000	9701600	33943000	21589000	12354000	79924000	51803000	28121000	464560000	271860000	192710000	33892	3765	32070	208768;208769;208770;208771;208772;208773;208774;208775	281939;281940;281941;281942;281943;281944;281945;281946	281943			8	
LSDLVNTAILIALNKR	1	Unmodified	1753.0462	0.046168917	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.206	85.486	3	0.00023597	48740	160513_QHF_FH_JSI10Kac_6	83.252	71.483			0.52421	0.60099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52421	0.60099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111530000	77046000	34482000	0	0	0	111530000	77046000	34482000	0	0	0	0	0	0	33893	3765	32071	208776	281947	281947			1	
LSDNPAWEGDK	1	Unmodified	1230.5517	0.55168102	4533	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.633	31.061	2	0.010515	28011	160511_QHF_FH_JSI12i_1	57.019	36.118			1.3798	1.436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3798	1.436	NaN	1	1	Median	75034000	28248000	46786000	0	0	0	0	0	0	0	0	0	75034000	28248000	46786000	33894	4533	32072	208777	281948	281948			1	
LSDPELGVEEEPFHTIMK	1	Unmodified	2069.998	0.99795767	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	77.87	77.291	3	4.3379E-17	66832	160511_QHF_FH_JSI12i_2	164.57	157.46			0.92678	0.99773	28.389	6	0	Median	1.1908	1.0144	NaN	1	0	Median	0.63955	0.7714	53.835	2	0	Median	0.88902	0.87175	16.751	2	0	Median	0.95281	1.0471	NaN	1	0	Median	1033400000	543590000	489780000	157320000	62326000	94993000	345170000	181240000	163930000	336720000	192980000	143750000	194160000	107050000	87111000	33895	2605	32073	208778;208779;208780;208781;208782;208783	281949;281950;281951;281952;281953;281954;281955;281956;281957	281951			9	
LSDPGIPITVLSR	0	Unmodified	1366.782	0.78201531	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	79.47	78.663	2	0.023537	67898	160511_QHF_FH_JSI12i_2	51.092	40.262			1.095	1.0766	12.514	4	0	Median	1.1812	1.0331	NaN	1	0	Median	0.74223	0.89844	NaN	1	0	Median	1.1907	1.2018	NaN	1	0	Median	1.0152	1.122	NaN	1	0	Median	94154000	51283000	42871000	18730000	9387900	9341800	20492000	13392000	7100400	34149000	18560000	15589000	20783000	9943100	10839000	33896	1230	32074	208784;208785;208786;208787	281958	281958			1	
LSDQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	Unmodified	3405.6122	0.61219615	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	96.268	87.014	3	7.5093E-15	49646	160513_QHF_FH_JSI9Kac_6	98.657	56.005			1.9952	1.9325	15.616	2	0	Median	1.9784	1.7305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0122	2.1581	NaN	1	0	Median	121890000	44864000	77028000	65612000	21344000	44268000	0	0	0	0	0	0	56281000	23520000	32761000	33897	2074	32075	208788;208789	281959	281959			1	
LSDQCTGLQGFLVFHSFGGGTGSGFTSLLMER	0	Oxidation (M)	3421.6071	0.60711077	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			95.045	89.324	3	3.8441E-05	51476	160513_QHF_FH_JSI10Kac_6	73.296	63.413			0.76072	0.88434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76072	0.88434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50544000	35446000	15098000	0	0	0	50544000	35446000	15098000	0	0	0	0	0	0	33898	2074	32075	208790	281960	281960		1742	1	
LSDQDLDQALSDEELNAFQK	1	Unmodified	2278.0601	0.060100239	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			89.527	89.443	2;3	7.9802E-33	81192	160511_QHF_FH_JSI10i_1	150.57	120.13			1.2335	1.4062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2335	1.4062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25703000	10154000	15549000	0	0	0	25703000	10154000	15549000	0	0	0	0	0	0	33899	3441	32076	208791;208792	281961;281962	281962			2	
LSDQFHDILIR	0	Unmodified	1355.7197	0.7197494	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		6	4						6	3	3	5	5	63.245	60.064	2;3	4.2092E-10	52954	160511_QHF_FH_JSI9i_2	116.54	101.15			0.92292	0.9462	15.279	14	0	Median	1.0086	0.84094	14.497	3	0	Plateau	0.73799	0.84149	10.969	3	0	Median	0.98396	0.97033	17.416	4	0	Median	0.93805	1.0167	14.42	4	0	Median	4811900000	2418700000	2393200000	666120000	319390000	346730000	784500000	455790000	328710000	1764400000	799360000	965010000	1596900000	844100000	752780000	33900	503	32077	208793;208794;208795;208796;208797;208798;208799;208800;208801;208802;208803;208804;208805;208806;208807;208808	281963;281964;281965;281966;281967;281968;281969;281970;281971;281972;281973;281974;281975;281976;281977;281978;281979	281972			17	
LSDQFHDILIRK	1	Unmodified	1483.8147	0.81471242	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							4	3	2	2	51.879	50.881	2;3;4	1.2563E-06	44606	160511_QHF_FH_JSI11i_3	122.39	115.02			0.99331	0.95976	32.079	11	2	Median	0.96786	0.78077	23.402	4	1	Median	1.1485	1.3377	13.064	3	1	Plateau	1.0401	1.01	7.2178	2	0	Median	0.67939	0.68563	20.404	2	0	Median	2748800000	1302600000	1446200000	445480000	224410000	221070000	637290000	291150000	346140000	1007900000	416430000	591430000	658180000	370650000	287530000	33901	503	32078	208809;208810;208811;208812;208813;208814;208815;208816;208817;208818;208819	281980;281981;281982;281983;281984;281985;281986;281987;281988;281989;281990;281991;281992;281993;281994;281995;281996;281997	281980			18	
LSDQTILFQGAGEAALGIAHLIVMALEK	1	Unmodified	2908.5732	0.57321509	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	105.29	97.161	3	8.1744E-136	58883	160513_QHF_FH_JSI10Kac_6	257.5	239.25			0.88039	0.98915	2.2052	3	0	Plateau	1.1538	0.9859	NaN	1	0	Median	0.83695	0.9893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88039	0.9507	NaN	1	0	Median	1459100000	783560000	675560000	621340000	308860000	312480000	813060000	460340000	352720000	0	0	0	24718000	14355000	10363000	33902	1616	32079	208820;208821;208822	281998;281999;282000;282001;282002;282003	282002			6	
LSDQTILFQGAGEAALGIAHLIVMALEK	1	Oxidation (M)	2924.5681	0.56812971	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			104.6	98.875	3	3.5749E-28	58532	160513_QHF_FH_JSI10Kac_6	121.49	103.24			1.3003	1.5114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3003	1.5114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50556000	27373000	23183000	0	0	0	50556000	27373000	23183000	0	0	0	0	0	0	33903	1616	32079	208823	282004	282004		1292	1	
LSDSFSLYPQFMFHLR	0	Unmodified	1986.9662	0.96620404	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	1	2	95.355	89.824	3	4.0627E-24	46191	160513_QHF_FH_JSI11Kac_6	152.99	126.87			1.1416	1.0682	14.422	5	0	Median	1.2101	1.0137	NaN	1	0	Median	1.1591	1.3643	NaN	1	0	Median	0.99382	0.93491	NaN	1	0	Median	1.0776	1.1132	5.8426	2	0	Median	809570000	389280000	420290000	201310000	86660000	114650000	16382000	7939400	8442200	168490000	83047000	85447000	423380000	211640000	211750000	33904	2675	32080	208824;208825;208826;208827;208828	282005;282006;282007;282008;282009	282006			5	
LSDSFSLYPQFMFHLR	0	Oxidation (M)	2002.9611	0.96111866	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		87.182	78.208	2	0.0016241	43572	160513_QHF_FH_JSI11Kac_6	83.045	67.102			2.4018	2.2111	13.793	2	2	Median	2.3253	2.0056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.481	2.4376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112340000	21693000	90648000	68902000	11939000	56963000	0	0	0	43440000	9754500	33685000	0	0	0	33905	2675	32080	208829;208830	282010;282011	282010		2097	2	
LSDSLGQR	0	Unmodified	874.45084	0.45084476	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	16.542	15.966	2	0.048721	12900	160511_QHF_FH_JSI11i_2	37.558	17.038			1.0723	1.073	25.022	5	0	Median	1.6679	1.4219	NaN	1	0	Median	1.2623	1.5507	NaN	1	0	Median	0.98933	0.98038	12.773	2	0	Median	0.83035	0.92173	NaN	1	0	Median	906930000	442100000	464830000	148270000	59719000	88553000	94064000	49762000	44301000	489670000	232330000	257340000	174920000	100290000	74636000	33906	1181	32081	208831;208832;208833;208834;208835	282012	282012			1	
LSDSLGQRQPDPDENKPMEDK	2	Unmodified	2398.1071	0.10706721	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	31.222	30.724	3;4	1.479E-07	26576	160511_QHF_FH_JSI11i_3	86.479	72.17			1.1715	1.0955	21.531	6	1	Median	1.2809	1.0774	NaN	1	0	Median	0.77319	0.9618	1.6606	2	0	Median	1.6644	1.5322	0.84494	2	1	Median	1.0713	1.1139	NaN	1	0	Median	371070000	159950000	211120000	69989000	26957000	43032000	126040000	66819000	59220000	134850000	44152000	90700000	40189000	22021000	18168000	33907	1181	32082	208836;208837;208838;208839;208840;208841	282013;282014;282015;282016;282017;282018;282019;282020;282021;282022;282023;282024	282013			12	
LSDSWQPR	0	Unmodified	987.47739	0.47739386	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	30.584	29.668	2	0.015799	25044	160511_QHF_FH_JSI12i_2	50.127	24.39			0.81283	0.82484	11.956	4	0	Median	0.90555	0.76602	NaN	1	0	Median	0.71363	0.88818	NaN	1	0	Median	0.76194	0.75894	NaN	1	0	Median	0.86712	0.97096	NaN	1	0	Median	376710000	220790000	155920000	70500000	36502000	33998000	109270000	64737000	44535000	87978000	63520000	24457000	108960000	56026000	52934000	33908	3173	32083	208842;208843;208844;208845	282025;282026	282025			2	
LSDSYSNTLPVRK	1	Unmodified	1478.7729	0.77290718	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		36.253	36.253	3	0.01768	31697	160511_QHF_FH_JSI11i_3	38.839	19.516			1.8484	1.6786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8484	1.6786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33065000	9830300	23235000	0	0	0	0	0	0	33065000	9830300	23235000	0	0	0	33909	5478	32084	208846;208847	282027;282028	282027			2	
LSDTTEYQPILSSYSHR	0	Unmodified	1995.9538	0.95378467	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	56.605	55.903	3	1.2696E-12	49509	160511_QHF_FH_JSI11i_3	154.88	150.08			1.3784	1.2254	14.572	5	2	Median	1.4687	1.2254	NaN	1	1	Median	0.86064	1.057	NaN	1	0	Median	1.3874	1.3121	NaN	1	0	Median	1.1125	1.1626	24.435	2	1	Median	647450000	335360000	312090000	69180000	31201000	37979000	162910000	96465000	66445000	190760000	92906000	97853000	224600000	114780000	109820000	33910	2984	32085	208848;208849;208850;208851;208852	282029;282030;282031;282032;282033;282034;282035	282029			7	
LSDVLKPLTDAQVEAMK	2	Unmodified	1856.9918	0.99175008	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	75.254	73.993	3	0.018704	63883	160511_QHF_FH_JSI12i_2	40.856	35.538			1.4455	1.5437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4455	1.5437	NaN	1	1	Median	41041000	19401000	21639000	0	0	0	0	0	0	0	0	0	41041000	19401000	21639000	33911	3888	32086	208853	282036	282036			1	
LSDVTLVPVSCSELEK	1	Unmodified	1774.9023	0.90226638	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.865	74.543	2	0.00024795	67796	160511_QHF_FH_JSI11i_1	87.001	71.461			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7045600	7045600	0	0	0	0	0	0	0	7045600	7045600	0	0	0	0	33912	739	32087	208854	282037	282037			1	
LSDYDSSEEAIR	0	Unmodified	1383.6154	0.61540349	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.222	31.887	2	0.016798	28415	160511_QHF_FH_JSI10i_1	50.194	38.704			1.455	1.6384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.455	1.6384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34057000	13407000	20649000	0	0	0	34057000	13407000	20649000	0	0	0	0	0	0	33913	3117	32088	208855	282038	282038			1	
LSDYKGK	2	Acetyl (K)	851.43888	0.43888309	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0.707					1	2	1				2		2	20.934	13.622	2	0.042449	8870	160513_QHF_FH_JSI12Kac_4	62.717	26.532			0.65114	0.72623	39.107	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86509	1.009	14.969	2	0	Median	NaN	NaN	NaN	0	0	Median	0.47999	0.52842	13.434	2	0	Median	115140000	64553000	50582000	0	0	0	48073000	23172000	24901000	0	0	0	67062000	41381000	25681000	33914	1390	32089	208856;208857;208858;208859	282039;282040;282041	282040			3	
LSDYLFTLAR	0	Unmodified	1197.6394	0.63937381	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.447	79.651	2	6.0012E-05	70019	160511_QHF_FH_JSI11i_2	91.087	51.02			1.2277	1.2406	6.8148	4	0	Median	1.3942	1.1794	NaN	1	0	Median	1.0412	1.2824	NaN	1	0	Median	1.2145	1.2002	NaN	1	0	Median	1.2411	1.3695	NaN	1	0	Median	360540000	173350000	187190000	61111000	28050000	33061000	77417000	37060000	40358000	145520000	70821000	74696000	76492000	37417000	39074000	33915	4065	32090	208860;208861;208862;208863	282042;282043;282044;282045;282046	282045			5	
LSEADNRK	1	Unmodified	931.47231	0.47230849	5439	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.84	5	8	4				2	5		4	6	8	6	4.9836	2.0973	2;3	0.00038798	2419	160511_QHF_FH_JSI11i_2	79.906	54.816			0.96229	1.0095	20.853	24	2	Median	1.2792	1.0652	20.14	4	0	Median	0.73501	0.86676	17.765	6	0	Median	1.2372	1.2122	17.184	8	2	Median	0.85035	0.90923	17.885	6	0	Median	10209000000	4887300000	5321900000	1804000000	705230000	1098800000	2129700000	1094600000	1035000000	3634100000	1804300000	1829700000	2641400000	1283100000	1358300000	33916	5439	32091	208864;208865;208866;208867;208868;208869;208870;208871;208872;208873;208874;208875;208876;208877;208878;208879;208880;208881;208882;208883;208884;208885;208886;208887	282047;282048;282049;282050;282051;282052;282053;282054;282055;282056;282057;282058;282059;282060;282061;282062;282063;282064;282065;282066;282067	282060			19	
LSECEEQAK	1	Unmodified	1092.4757	0.47573888	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		9.2954	8.9316	2	0.00023031	6663	160511_QHF_FH_JSI11i_1	84.615	61.186			1.0632	1.042	16.967	3	2	Median	1.0632	0.87107	NaN	1	1	Median	1.0035	1.2228	NaN	1	1	Median	1.0764	1.042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	662860000	355010000	307850000	106260000	44473000	61791000	276240000	147460000	128770000	280360000	163080000	117280000	0	0	0	33917	3213	32092	208888;208889;208890	282068;282069;282070	282068			3	
LSEDYGVLK	1	Unmodified	1022.5284	0.52842638	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.33	5	3	3			1	3			4	4	3	4	45.205	41.841	2	0.00057096	24141	160513_QHF_FH_JSI11Kac_4	92.439	56.559			0.90948	0.9656	33.928	15	1	Median	1.0776	0.89464	68.1	4	1	Median	0.78637	0.94591	10.901	4	0	Median	0.89305	0.86989	8.3636	3	0	Median	1.1765	1.0542	12.938	4	0	Linear	12853000000	6297100000	6556200000	3005000000	1473200000	1531900000	3027500000	1675100000	1352400000	3866700000	1818400000	2048200000	2954100000	1330500000	1623700000	33918	1390	32093	208891;208892;208893;208894;208895;208896;208897;208898;208899;208900;208901;208902;208903;208904;208905	282071;282072;282073;282074;282075;282076;282077;282078;282079;282080;282081;282082;282083;282084;282085;282086;282087;282088;282089;282090;282091;282092;282093;282094;282095	282083			25	
LSEEASQALIEAYVDMRK	1	Oxidation (M)	2068.0147	0.014670371	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		78.341	78.341	3	0.0011384	70003	160511_QHF_FH_JSI11i_3	54.974	37.895			0.65188	0.61756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65188	0.61756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56991000	35919000	21072000	0	0	0	0	0	0	56991000	35919000	21072000	0	0	0	33919	1409	32094	208906	282096	282096		1055	1	
LSEEELLDK	1	Unmodified	1074.5445	0.54447038	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.316	49.65	2	0.013241	45112	160511_QHF_FH_JSI12i_1	46.462	25.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33920	2099	32095	208907	282097	282097			1	
LSEEFLTAHPR	0	Unmodified	1298.6619	0.66190017	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.057	41.583	2	0.02574	35753	160511_QHF_FH_JSI11i_2	42.161	24.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33921	2712	32096	208908	282098	282098			1	
LSEELSGGR	0	Unmodified	946.47197	0.47197413	1939	P61158	ACTR3	Actin-related protein 3	no	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		18.082	17.57	2	0.0011278	14882	160511_QHF_FH_JSI10i_2	80.165	23.118			0.91216	1.016	39.252	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0831	1.341	NaN	1	1	Median	0.76821	0.76974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	216060000	92145000	123920000	0	0	0	112340000	37888000	74450000	103720000	54257000	49467000	0	0	0	33922	1939	32097	208909;208910	282099;282100	282100			2	
LSEEVVVAPNQESGMK	1	Unmodified	1715.84	0.84000047	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	2	2	49.104	48.354	2	2.7097E-05	43549	160511_QHF_FH_JSI10i_1	105.17	80.879			0.87351	0.74719	25.539	7	0	Median	0.8754	0.726	4.0695	2	0	Median	0.76043	0.90555	23.027	2	0	Median	0.87726	0.86571	51.506	2	0	Median	0.67102	0.72042	NaN	1	0	Median	837470000	421700000	415780000	223010000	116330000	106680000	200590000	105670000	94916000	373930000	181440000	192490000	39943000	18260000	21683000	33923	3128	32098	208911;208912;208913;208914;208915;208916;208917;208918	282101;282102;282103;282104;282105;282106	282105			6	
LSEFGIR	0	Unmodified	820.4443	0.44430282	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	40.161	39.204	2	0.013926	33358	160511_QHF_FH_JSI12i_2	67.035	34.564			1.09	1.0838	8.2427	3	1	Median	1.2052	1.0368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.09	1.0838	NaN	1	0	Median	1.0605	1.2163	NaN	1	0	Median	456940000	203730000	253210000	110260000	54361000	55904000	0	0	0	214280000	86644000	127640000	132390000	62729000	69662000	33924	5254	32099	208919;208920;208921	282107;282108	282107			2	
LSEFIPAVFR	0	Unmodified	1177.6495	0.64954457	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	85.018	84.696	2	0.0011751	75476	160511_QHF_FH_JSI11i_3	78.149	56.621			1.1556	1.0262	20.808	4	1	Median	1.1795	1.029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98374	0.93293	13.098	2	1	Median	1.3749	1.4046	NaN	1	0	Median	150300000	75033000	75266000	24148000	11420000	12728000	0	0	0	84713000	43640000	41073000	41437000	19972000	21464000	33925	2302	32100	208922;208923;208924;208925	282109;282110;282111	282109			3	
LSEGDLLAEIETDK	1	Unmodified	1531.7617	0.76173337	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.296	86.81	2	0.0067286	79063	160511_QHF_FH_JSI12i_1	51.286	32.043			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33926	970	32101	208926	282112	282112			1	
LSEGFSIHTR	0	Unmodified	1145.5829	0.58292157	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		8	10						4	4	6	7	5	34.692	32.265	2;3	1.5641E-14	28044	160511_QHF_FH_JSI9i_2	147.74	112.09			0.91555	0.94405	25.036	20	1	Median	1.1864	1.0113	8.2645	4	0	Median	0.79291	0.96111	6.94	5	1	Median	0.93746	0.90116	39.225	6	0	Median	0.89678	0.91558	24.68	5	0	Median	4637400000	2316200000	2321200000	550750000	217590000	333150000	1001000000	542610000	458410000	1624200000	797920000	826270000	1461400000	758070000	703310000	33927	1177	32102	208927;208928;208929;208930;208931;208932;208933;208934;208935;208936;208937;208938;208939;208940;208941;208942;208943;208944;208945;208946;208947;208948	282113;282114;282115;282116;282117;282118;282119;282120;282121;282122;282123;282124;282125;282126;282127;282128;282129;282130;282131;282132;282133;282134;282135;282136;282137;282138;282139;282140	282127			28	
LSEGSQPAEEEEDQETPSR	0	Unmodified	2116.9033	0.90326525	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		24.697	24.13	2	6.2711E-100	21170	160511_QHF_FH_JSI10i_1	266.42	246.32			1.2863	1.0812	7.5767	3	0	Plateau	1.3384	1.0812	NaN	1	0	Median	0.9796	1.1475	NaN	1	0	Median	1.2863	1.2567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	173790000	75667000	98119000	60839000	27104000	33736000	58037000	25235000	32802000	54910000	23329000	31581000	0	0	0	33928	5380	32103	208949;208950;208951	282141;282142;282143;282144;282145;282146;282147	282144			7	
LSEGVTISYK	1	Unmodified	1095.5812	0.58119023	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.6	0.49	2	3								1			4	43.092	42.078	2	0.012422	35955	160511_QHF_FH_JSI12i_2	55.084	40.927			0.93934	0.97341	28.373	5	5	Median	1.4543	1.2811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84226	0.90751	29.296	4	4	Median	580600000	310930000	269670000	102770000	45112000	57656000	0	0	0	0	0	0	477830000	265820000	212010000	33929	841	32104	208952;208953;208954;208955;208956	282148;282149;282150;282151;282152	282149			5	
LSEHATAPTR	0	Unmodified	1081.5516	0.55162144	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	3	4	5	5	10.14	8.1056	2;3	1.2584E-07	6534	160511_QHF_FH_JSI12i_3	120.99	101.2			1.0459	1.0092	10.573	17	0	Median	1.1501	0.97445	0.40857	3	0	Plateau	0.90154	1.094	11.494	4	0	Median	1.043	1.0092	11.197	5	0	Median	1.0459	1.0417	11.383	5	0	Median	12358000000	5830500000	6527600000	1136600000	507280000	629290000	2067000000	1113500000	953510000	4941900000	2130400000	2811500000	4212700000	2079300000	2133400000	33930	1402	32105	208957;208958;208959;208960;208961;208962;208963;208964;208965;208966;208967;208968;208969;208970;208971;208972;208973	282153;282154;282155;282156;282157;282158;282159;282160;282161;282162;282163;282164;282165;282166;282167;282168;282169;282170;282171;282172;282173;282174	282173			22	
LSEIDVSSEGVK	1	Unmodified	1261.6402	0.64016167	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	47.152	43.556	2	9.7175E-16	39270	160511_QHF_FH_JSI11i_1	156.48	112.13			0.84036	0.87036	12.264	6	0	Median	1.0649	0.86691	NaN	1	0	Median	0.80513	0.95623	12.744	2	0	Median	0.90609	0.88679	17.804	2	0	Median	0.75208	0.78333	NaN	1	0	Median	2298800000	1136400000	1162400000	386230000	178880000	207350000	685420000	355930000	329490000	658370000	315470000	342900000	568740000	286120000	282620000	33931	3998	32106	208974;208975;208976;208977;208978;208979	282175;282176;282177;282178;282179;282180;282181;282182;282183	282176			9	
LSEIPLTLHSVSELVR	0	Unmodified	1792.0094	0.0094490594	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	90.683	90.356	2;3	6.5319E-09	78233	160511_QHF_FH_JSI12i_3	140.84	129.58			0.87546	0.83389	22.802	7	0	Median	0.87546	0.75208	NaN	1	0	Median	0.67857	0.83389	NaN	1	0	Median	1.0161	0.99184	42.982	2	0	Median	0.98159	1.0496	16.469	3	0	Median	433770000	211710000	222060000	27030000	12642000	14389000	58739000	35251000	23488000	142440000	71098000	71338000	205560000	92717000	112850000	33932	5330	32107	208980;208981;208982;208983;208984;208985;208986;208987	282184;282185;282186;282187;282188;282189;282190	282188			7	
LSEISGIPLDDIEFAK	1	Unmodified	1745.9087	0.90873196	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	97.345	97.186	2	7.5882E-08	87967	160511_QHF_FH_JSI10i_1	136.99	91.015			0.99351	0.98017	19.529	7	6	Median	1.3173	1.0991	NaN	1	0	Median	0.99114	1.1779	27.545	2	2	Median	0.92571	0.88689	14.143	2	2	Median	0.89068	0.90939	15.358	2	2	Median	247840000	122540000	125310000	23459000	11325000	12134000	86862000	43743000	43120000	73904000	36038000	37866000	63618000	31430000	32188000	33933	4152	32108	208988;208989;208990;208991;208992;208993;208994	282191;282192;282193;282194;282195;282196;282197;282198	282196			8	
LSEIVTLAK	1	Unmodified	972.58555	0.58554733	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.8	5.88		3					2			1	2	1	1	56.383	51.356	2	0.004813	44029	160511_QHF_FH_JSI12i_2	56.432	19.875			0.94097	1.0111	11.93	5	0	Median	1.0054	0.84214	NaN	1	0	Median	0.81391	0.97768	4.7547	2	0	Median	1.1697	1.1585	NaN	1	0	Median	0.94097	1.0519	NaN	1	0	Median	284690000	158580000	126110000	74038000	37033000	37005000	82659000	49376000	33283000	5305300	2330700	2974600	122680000	69839000	52845000	33934	5223	32109	208995;208996;208997;208998;208999	282199;282200	282199			2	
LSELDDRADALQAGASQFETSAAK	1	Unmodified	2493.1983	0.19832505	2717;2047	P63027;Q15836	VAMP2;VAMP3	Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	67.473	66.781	3	2.2095E-34	58376	160511_QHF_FH_JSI11i_2	177.41	164.73			0.94488	0.98492	9.6877	9	0	Median	1.142	0.95497	4.3669	2	0	Median	0.83667	1.0142	10.717	2	0	Median	0.91808	0.92018	13.884	2	0	Median	0.94488	1.0542	12.638	3	0	Median	2192100000	1225100000	967040000	338020000	161890000	176130000	543660000	310680000	232980000	565810000	331410000	234400000	744600000	421080000	323530000	33935	2047;2717	32110	209000;209001;209002;209003;209004;209005;209006;209007;209008	282201;282202;282203;282204;282205;282206;282207;282208;282209;282210;282211;282212;282213;282214;282215;282216;282217	282212			17	
LSELEAALQR	0	Unmodified	1128.6139	0.61388734	51;85	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.18		4	2				2	4		2	3	3	4	56.882	51.173	2	3.6073E-11	43908	160511_QHF_FH_JSI12i_2	149.82	105.42		+	0.88603	0.95714	33.634	12	4	Median	0.93028	0.78297	25.588	2	1	Median	0.7773	0.93397	18.818	3	1	Median	1.2337	1.2631	59.083	3	2	Median	1.0146	1.1229	26.64	4	0	Median	9764800000	4867800000	4897000000	1630800000	780480000	850310000	2064700000	1088000000	976670000	3143600000	1538500000	1605100000	2925700000	1460800000	1464900000	33936	51;85	32111	209009;209010;209011;209012;209013;209014;209015;209016;209017;209018;209019;209020	282218;282219;282220;282221;282222;282223;282224;282225;282226;282227;282228;282229;282230;282231;282232;282233;282234	282220			17	
LSELEAALQRAK	1	Unmodified	1327.746	0.74596415	51;85	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267	KRT8	Keratin, type II cytoskeletal 8	no	no	0	0	0	1				By MS/MS	3	0			1										1	51.377	51.141	3	4.3688E-05	43814	160511_QHF_FH_JSI12i_3	101.39	77.102		+	0.21393	0.21435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21393	0.21435	NaN	1	1	Median	105330000	83468000	21864000	0	0	0	0	0	0	0	0	0	105330000	83468000	21864000	33937	51;85	32112	209021	282235	282235			1	
LSELLPEEVEAEVK	1	Unmodified	1583.8294	0.82941901	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	4										2	1	1	78.625	78.328	2	0.00010409	71327	160511_QHF_FH_JSI12i_1	108.35	59.708			1.1167	1.2555	19.505	4	2	Median	NaN	NaN	NaN	0	0	Median	0.92599	1.0955	17.775	2	2	Median	1.6181	1.5553	NaN	1	0	Median	1.1835	1.2688	NaN	1	0	Median	192590000	87350000	105240000	0	0	0	112010000	57052000	54960000	36516000	9786200	26729000	44058000	20512000	23546000	33938	5544	32113	209022;209023;209024;209025	282236;282237;282238;282239	282236			4	
LSELQETSEQAQSK	1	Unmodified	1576.758	0.75804498	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.422	25.519	2	3.4989E-07	22685	160511_QHF_FH_JSI12i_1	89.43	58.866			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33939	2938	32114	209026;209027	282240;282241	282240			2	
LSELQLR	0	Unmodified	857.49707	0.49706667	4475	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	38.266	37.483	2	0.023698	32004	160511_QHF_FH_JSI12i_2	55.441	12.318			0.96435	0.91264	18.428	4	0	Median	1.0791	0.9173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82682	0.83037	12.639	2	0	Median	1.0573	1.1882	NaN	1	0	Median	1742800000	849200000	893630000	372530000	157140000	215390000	0	0	0	911950000	466320000	445620000	458360000	225740000	232620000	33940	4475	32115	209028;209029;209030;209031	282242;282243	282242			2	
LSELSNSQQSVQTLSLWLIHHR	0	Unmodified	2575.3507	0.35068379	4921;4189	Q96P16;Q9NQG5	RPRD1A;RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1A;Regulation of nuclear pre-mRNA domain-containing protein 1B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	84.391	76.666	3;4	1.8491E-90	43211	160513_QHF_FH_JSI10Kac_6	230.71	211.4			1.0522	1.0553	14.028	5	0	Median	1.6156	1.3639	NaN	1	0	Median	0.87222	1.0399	2.081	2	0	Median	1.0522	0.98592	NaN	1	0	Median	1.1897	1.252	NaN	1	0	Median	5967700000	3057800000	2909900000	1102200000	453210000	648950000	3140800000	1776600000	1364200000	1253000000	608170000	644780000	471780000	219770000	252010000	33941	4189;4921	32116	209032;209033;209034;209035;209036	282244;282245;282246;282247;282248	282248			5	
LSEMTEAEQQQLIDDHFLFDK	1	Unmodified	2536.1792	0.17916952	1019	P12532	CKMT1A	Creatine kinase U-type, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				87.512	87.023	3	0.029932	76672	160511_QHF_FH_JSI9i_2	28.178	19.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6523000	0	6523000	6523000	0	6523000	0	0	0	0	0	0	0	0	0	33942	1019	32117	209037	282249	282249			1	
LSENNIQTIFAVTEEFQPVYK	1	Unmodified	2469.2428	0.24275605	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	1	2	2	98.077	92.422	3	1.2688E-28	89494	160511_QHF_FH_JSI11i_2	171	162.71			1.0154	0.9526	18.108	6	2	Median	1.0829	0.92048	NaN	1	1	Median	0.68579	0.8156	NaN	1	1	Median	1.059	1.0554	9.6417	2	0	Median	0.95527	1.0373	31.559	2	0	Median	1688600000	882790000	805800000	94402000	35129000	59273000	98782000	68455000	30327000	746280000	414070000	332220000	749130000	365140000	383990000	33943	841	32118	209038;209039;209040;209041;209042;209043	282250;282251;282252;282253;282254;282255	282252			6	
LSENVIDR	0	Unmodified	944.49271	0.49270958	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.919	27.55	2	0.061211	23111	160511_QHF_FH_JSI11i_2	34.808	9.071			0.73397	0.73836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73397	0.73836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	200730000	109620000	91114000	0	0	0	0	0	0	200730000	109620000	91114000	0	0	0	33944	5098	32119	209044	282256	282256			1	
LSEPEEELLQQFK	1	Unmodified	1588.7985	0.79845323	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.854	80.234	2	0.02665	70430	160511_QHF_FH_JSI11i_2	50.353	36.544			1.3967	1.4446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3967	1.4446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22881000	9132800	13748000	0	0	0	0	0	0	22881000	9132800	13748000	0	0	0	33945	5538	32120	209045	282257;282258	282257			2	
LSEPKPIFFNLNIAAAKPTPPK	3	Unmodified	2392.3519	0.35185299	1141	P18583	SON	Protein SON	yes	yes	0	0	0	2	By MS/MS	By matching			3	0			2							1	1			85.066	83.836	4	0.0060716	68895	160511_QHF_FH_JSI9i_3	35.834	27.88			0.73016	0.72489	32.769	2	0	Median	0.69286	0.57496	NaN	1	0	Median	0.76945	0.91391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35820000	17806000	18014000	16764000	8462000	8301700	19057000	9344000	9712800	0	0	0	0	0	0	33946	1141	32121	209046;209047	282259	282259			1	
LSEPVPQTNAHESK	1	Unmodified	1535.758	0.7579854	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	20.895	19.76	3	0.038371	16277	160511_QHF_FH_JSI12i_2	30.739	18.379			0.52697	0.58058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52697	0.58058	NaN	1	1	Median	19856000	11941000	7914100	0	0	0	0	0	0	0	0	0	19856000	11941000	7914100	33947	1152	32122	209048	282260	282260			1	
LSEQELQFR	0	Unmodified	1148.5826	0.58258722	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	48.465	47.633	2	1.8447E-05	40650	160511_QHF_FH_JSI12i_2	107.69	49.097			1.1089	1.0702	13.362	8	0	Median	1.407	1.1972	26.437	2	0	Median	0.8798	1.0459	3.6719	2	0	Median	1.1137	1.1102	5.6138	2	0	Median	1.0432	1.1201	17.956	2	0	Median	1523400000	746190000	777250000	264600000	112560000	152040000	403290000	230640000	172650000	459170000	220270000	238890000	396380000	182710000	213670000	33948	2780	32123	209049;209050;209051;209052;209053;209054;209055;209056	282261;282262;282263;282264;282265;282266;282267;282268;282269;282270	282263			10	
LSEQNPAASYYNVDVLK	1	Unmodified	1909.9422	0.94215736	2287	Q0JRZ9	FCHO2	F-BAR domain only protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		70.047	69.735	2	2.7685E-08	63435	160511_QHF_FH_JSI11i_1	101.6	81.214			0.89126	0.95503	9.676	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75447	0.89187	NaN	1	1	Median	1.0529	1.0227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29116000	18515000	10601000	0	0	0	15732000	10379000	5352900	13384000	8135700	5248500	0	0	0	33949	2287	32124	209057;209058;209059	282271;282272;282273	282272			3	
LSESGAIMTDLEENPK	1	Unmodified	1732.8189	0.81893068	4676	Q9H2J4	PDCL3	Phosducin-like protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	2	4										4	2	62.169	61.367	2	7.4853E-28	53466	160511_QHF_FH_JSI11i_2	151.78	115.36			1.3113	1.3305	31.551	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3878	1.3305	40.645	3	3	Median	1.0891	1.207	24.35	2	2	Median	151980000	57032000	94950000	0	0	0	0	0	0	124230000	41159000	83067000	27755000	15873000	11882000	33950	4676	32125	209060;209061;209062;209063;209064;209065	282274;282275;282276;282277;282278;282279	282279			6	
LSESQLSFR	0	Unmodified	1065.5455	0.54547343	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	55.64	44.993	2	0.030128	23966	160513_QHF_FH_JSI9Kac_5	44.82	20.865			0.98539	1.0326	13.018	4	0	Median	0.97959	0.82596	NaN	1	0	Median	0.86406	1.0252	NaN	1	0	Median	1.0458	1.0401	NaN	1	0	Median	0.99122	1.1167	NaN	1	0	Median	43213000	20073000	23141000	15885000	6410500	9474600	5533600	3168600	2365000	16996000	7799800	9196100	4798800	2693800	2105000	33951	4197	32126	209066;209067;209068;209069	282280;282281;282282	282280			3	
LSESVLSPPCFVR	0	Unmodified	1489.7599	0.75989966	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			74.494	73.733	2	0.059375	65641	160511_QHF_FH_JSI10i_2	42.802	28.112			0.62762	0.74107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62762	0.74107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17073000	11144000	5929400	0	0	0	17073000	11144000	5929400	0	0	0	0	0	0	33952	3922	32127	209070	282283	282283			1	
LSEVEEAQEASMETDPKP	1	Unmodified	1988.8885	0.8884668	3048	Q6I9Y2	THOC7	THO complex subunit 7 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		51.205	50.792	2	3.5663E-06	45983	160511_QHF_FH_JSI11i_1	106.58	100.34			0.83702	0.89293	9.8388	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71439	0.83292	NaN	1	1	Median	0.9807	0.95727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40919000	26289000	14630000	0	0	0	14609000	8728900	5879900	26310000	17560000	8750600	0	0	0	33953	3048	32128	209071;209072	282284;282285	282284			2	
LSEVLQAVTDHDIPQQLVER	0	Unmodified	2289.1965	0.19647456	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	2	4	4	83.583	83.013	3	1.3846E-16	72191	160511_QHF_FH_JSI12i_3	158.89	144.64			0.74065	0.92085	89.177	11	10	Median	0.68209	0.6003	NaN	1	1	Median	2.0192	2.4298	137.21	2	1	Median	0.70643	0.70126	83.111	4	4	Median	0.64533	0.67795	73.321	4	4	Median	1488000000	800090000	687960000	128660000	58540000	70123000	222900000	99205000	123690000	639080000	330960000	308120000	497400000	311380000	186020000	33954	3922	32129	209073;209074;209075;209076;209077;209078;209079;209080;209081;209082;209083	282286;282287;282288;282289;282290;282291;282292;282293;282294;282295;282296;282297	282297			12	
LSEVTFRPLFFK	1	Unmodified	1482.8235	0.82348619	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		84.229	83.409	3	0.050757	74076	160511_QHF_FH_JSI11i_3	20.84	9.0477			1.0829	0.82744	16.734	3	0	Plateau	0.87434	0.71967	NaN	1	0	Median	0.70758	0.82744	NaN	1	0	Median	1.0829	1.0043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146230000	69157000	77070000	28760000	15126000	13634000	27768000	16362000	11406000	89699000	37669000	52029000	0	0	0	33955	4733	32130	209084;209085;209086	282298	282298			1	
LSEVVGSGK	1	Unmodified	874.476	0.47599688	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		16.524	16.046	2	0.0052674	13570	160511_QHF_FH_JSI10i_1	55.908	20.036			1.2687	1.0353	24.735	3	1	Median	1.2687	1.0353	NaN	1	0	Median	0.83732	0.99809	NaN	1	0	Median	1.6312	1.5584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	522940000	256090000	266850000	184140000	78156000	105980000	183250000	105160000	78093000	155550000	72776000	82770000	0	0	0	33956	991	32131	209087;209088;209089	282299;282300;282301	282300			3	
LSFAHPPSAEVEAIALATLHDR	0	Unmodified	2344.2175	0.21754435	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	3.53		2	10						1	3	5	3	2	97.594	97.064	3;4	1.0769E-15	87003	160511_QHF_FH_JSI11i_3	131.65	123.26			0.98787	1.0656	27.573	13	2	Median	1.4306	1.1587	8.4608	3	0	Median	0.87378	1.0621	43.334	5	2	Median	1.1432	1.2212	16.855	3	0	Plateau	0.93262	0.9479	2.7185	2	0	Median	1256200000	581840000	674340000	92549000	38501000	54048000	253970000	119010000	134960000	556310000	256210000	300110000	353340000	168120000	185220000	33957	241	32132	209090;209091;209092;209093;209094;209095;209096;209097;209098;209099;209100;209101;209102	282302;282303;282304;282305;282306;282307;282308;282309;282310;282311;282312;282313;282314;282315;282316;282317;282318;282319;282320;282321;282322;282323;282324;282325	282304			23	
LSFAVPFR	0	Unmodified	935.52289	0.52288749	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	77.071	76.266	2	0.0022136	64050	160511_QHF_FH_JSI10i_3	81.784	63.001			0.84765	0.85154	33.471	8	1	Median	1.8425	1.5399	2.2978	2	0	Median	0.59753	0.73307	1.1582	2	0	Median	0.72537	0.71016	7.8636	2	1	Median	0.93741	0.99869	4.7295	2	0	Median	470750000	238340000	232410000	155400000	53306000	102100000	111180000	71743000	39436000	107690000	62132000	45558000	96475000	51162000	45313000	33958	2094	32133	209103;209104;209105;209106;209107;209108;209109;209110	282326;282327;282328;282329;282330;282331	282327			6	
LSFFFDFR	0	Unmodified	1077.5284	0.5283668	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	1	2	95.407	90.105	1;2	1.4466E-23	46626	160513_QHF_FH_JSI11Kac_6	182.68	126.56			0.9348	0.96972	16.427	8	0	Median	1.0432	0.8911	15.651	3	0	Plateau	0.9348	1.0945	1.9695	2	0	Median	0.92235	0.87018	NaN	1	0	Median	0.77482	0.79926	8.6356	2	0	Median	3034100000	1454800000	1579300000	500400000	224820000	275580000	1227900000	547900000	679990000	404530000	206660000	197860000	901290000	475370000	425920000	33959	1650	32134	209111;209112;209113;209114;209115;209116;209117;209118	282332;282333;282334;282335;282336;282337;282338;282339;282340;282341	282334			10	
LSFFGLEK	1	Unmodified	939.50657	0.50656873	5397	Q9ULF5	SLC39A10	Zinc transporter ZIP10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	75.973	75.514	2	0.017783	65541	160511_QHF_FH_JSI12i_3	48.283	28.001			0.34674	0.35449	127.37	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1422	0.14404	NaN	1	1	Median	0.84548	0.87246	NaN	1	0	Median	389160000	302580000	86579000	0	0	0	0	0	0	255670000	229890000	25781000	133480000	72685000	60798000	33960	5397	32135	209119;209120	282342;282343;282344	282344			3	
LSFGDAAQTLWAR	0	Unmodified	1434.7256	0.72556306	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		87.361	86.582	2	0.00026547	72256	160511_QHF_FH_JSI10i_3	76.228	51.452			1.0981	1.0422	7.046	3	0	Plateau	1.4649	1.1921	NaN	1	0	Median	0.93457	1.0746	NaN	1	0	Median	1.0981	1.0422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	185970000	92422000	93550000	37312000	16087000	21224000	41459000	18251000	23208000	107200000	58084000	49118000	0	0	0	33961	5202	32136	209121;209122;209123	282345;282346;282347;282348;282349;282350	282347			6	
LSFGDTLQVQNIHGAFNALGGADR	0	Unmodified	2500.2459	0.24588437	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	93.578	93.249	3	2.4474E-16	82967	160511_QHF_FH_JSI11i_3	119.02	105.98			0.86326	0.9626	9.1933	4	1	Median	NaN	NaN	NaN	0	0	Median	0.75318	0.91741	10.957	2	1	Median	1.1196	1.0537	NaN	1	0	Median	0.90812	0.93472	NaN	1	0	Median	382660000	202170000	180490000	0	0	0	124060000	66293000	57768000	122270000	63844000	58423000	136340000	72036000	64301000	33962	3953	32137	209124;209125;209126;209127	282351;282352;282353;282354;282355;282356;282357;282358;282359;282360	282353			10	
LSFGLEDEPLETATK	1	Unmodified	1648.8196	0.8195826	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	79.102	78.489	2	0.00024223	71146	160511_QHF_FH_JSI10i_1	101.53	77.189			0.72219	0.69906	15.311	5	4	Median	0.72219	0.58592	NaN	1	1	Median	0.57434	0.69575	NaN	1	0	Median	0.86788	0.84893	NaN	1	1	Median	0.71984	0.76475	12.702	2	2	Median	328140000	175710000	152430000	42773000	24641000	18132000	80702000	48724000	31978000	100140000	45720000	54417000	104530000	56626000	47902000	33963	622	32138	209128;209129;209130;209131;209132	282361;282362;282363;282364;282365	282364			5	
LSFHQTQVSQR	0	Unmodified	1329.6789	0.67894722	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			24.814	23.517	2;3	1.9407E-05	19353	160511_QHF_FH_JSI10i_3	75.819	59.442			0.86277	0.87087	7.3716	4	0	Median	1.0542	0.86849	11.2	2	0	Median	0.72467	0.87087	6.1243	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	268980000	120190000	148790000	169750000	70643000	99107000	99227000	49546000	49681000	0	0	0	0	0	0	33964	3955	32139	209133;209134;209135;209136	282366;282367;282368;282369;282370	282367			5	
LSFHTVEDLVK	1	Unmodified	1286.6871	0.68705229	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	70.842	70.693	3	0.0001976	61254	160511_QHF_FH_JSI12i_3	78.342	68.687			2.1326	2.0987	19.077	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.568	2.4018	NaN	1	1	Median	1.771	1.8339	NaN	1	1	Median	39023000	18040000	20984000	0	0	0	0	0	0	16675000	7013900	9661400	22348000	11026000	11322000	33965	2257	32140	209137;209138;209139	282371;282372;282373	282373			3	
LSFISVGNK	1	Unmodified	963.53893	0.53893149	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				57.093	55.537	2	0.0014093	45538	160511_QHF_FH_JSI9i_3	77.732	49.558			1.4852	1.1863	NaN	1	1	Median	1.4852	1.1863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53773000	24566000	29207000	53773000	24566000	29207000	0	0	0	0	0	0	0	0	0	33966	5420	32141	209140	282374	282374			1	
LSFLLLQSIK	1	Unmodified	1160.7169	0.71689585	2811	Q3B7T1	EDRF1	Erythroid differentiation-related factor 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.571	83.851	2	0.00099779	47557	160513_QHF_FH_JSI10Kac_6	72.325	49.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33967	2811	32142	209141	282375	282375			1	
LSFLVSYIASK	1	Unmodified	1226.6911	0.69107503	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	3	2	1	87.064	82.893	2	1.0209E-10	41786	160513_QHF_FH_JSI9Kac_6	131.28	104.77			1.479	1.5473	82.436	9	9	Median	1.8698	1.5919	92.301	3	3	Plateau	1.2937	1.5473	113.59	3	3	Median	2.2326	2.121	1.1374	2	2	Median	1.2845	1.3483	NaN	1	1	Median	1981000000	891120000	1089900000	620700000	223970000	396720000	692010000	367930000	324080000	457880000	190370000	267510000	210450000	108850000	101600000	33968	1609	32143	209142;209143;209144;209145;209146;209147;209148;209149;209150	282376;282377;282378;282379;282380;282381;282382;282383;282384	282382			9	
LSFLYLITGNLEK	1	Unmodified	1509.8443	0.84428121	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			10						8	4	4	5	5	99.578	95.333	2;3	3.7644E-65	89028	160511_QHF_FH_JSI12i_3	206.11	164.11			0.89015	0.88383	10.887	16	3	Median	1.0803	0.92038	8.436	4	0	Median	0.76467	0.88913	18.785	4	0	Median	1.0088	0.93921	6.5093	4	2	Median	0.79294	0.89209	5.693	4	1	Linear	25822000000	13395000000	12426000000	5426300000	2498200000	2928100000	5133100000	2672900000	2460300000	7808300000	4222900000	3585500000	7453900000	4001300000	3452600000	33969	1805	32144	209151;209152;209153;209154;209155;209156;209157;209158;209159;209160;209161;209162;209163;209164;209165;209166;209167;209168	282385;282386;282387;282388;282389;282390;282391;282392;282393;282394;282395;282396;282397;282398;282399;282400;282401;282402;282403;282404;282405;282406;282407;282408;282409;282410;282411;282412;282413	282405			29	
LSFMPFFLK	1	Unmodified	1128.6042	0.60417428	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	98.07	93.249	2	1.6101E-05	88646	160511_QHF_FH_JSI12i_3	121.62	88.778			0.98632	1.051	18.962	7	1	Median	1.0569	0.8665	32.755	2	0	Median	0.98632	1.1468	NaN	1	0	Median	0.95809	0.92117	3.0908	2	0	Median	1.0919	1.1222	9.269	2	1	Median	2638600000	1252700000	1385900000	553090000	275370000	277720000	107280000	52239000	55044000	742980000	351950000	391030000	1235300000	573110000	662150000	33970	991	32145	209169;209170;209171;209172;209173;209174;209175	282414;282415;282416;282417;282418;282419;282420;282421;282422	282419			8	
LSFPSIKPDTDQTLKK	3	Unmodified	1816.9935	0.99346464	3884	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			59.634	58.105	4	0.012018	48640	160511_QHF_FH_JSI10i_3	45.438	35.099			0.76586	0.88114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76586	0.88114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51321000	32639000	18681000	0	0	0	51321000	32639000	18681000	0	0	0	0	0	0	33971	3884	32146	209176	282423	282423			1	
LSFQHDPETSVLVLR	0	Unmodified	1739.9206	0.92063405	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.96		9	8						6	6	5	7	5	72.796	69.934	2;3	1.8109E-30	62987	160511_QHF_FH_JSI11i_3	225.15	196.19			0.99818	0.98926	15.033	23	3	Median	1.2029	1.0202	24.034	6	0	Median	0.85725	0.97745	11.777	5	0	Median	1.0413	0.99766	11.592	7	2	Median	0.92678	0.92179	11.28	5	1	Median	10816000000	5380200000	5435900000	1129900000	538160000	591690000	1939100000	1014800000	924300000	4578900000	2395500000	2183400000	3168300000	1431800000	1736500000	33972	2569	32147	209177;209178;209179;209180;209181;209182;209183;209184;209185;209186;209187;209188;209189;209190;209191;209192;209193;209194;209195;209196;209197;209198;209199	282424;282425;282426;282427;282428;282429;282430;282431;282432;282433;282434;282435;282436;282437;282438;282439;282440;282441;282442;282443;282444;282445;282446;282447;282448;282449;282450;282451;282452;282453;282454;282455;282456;282457;282458;282459;282460;282461	282427			38	
LSFQNVDPLGENIR	0	Unmodified	1600.8209	0.82092001	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	80.451	79.561	2	0.001527	69929	160511_QHF_FH_JSI11i_2	76.326	58.493			0.95638	0.98543	0.71407	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98689	0.99042	NaN	1	1	Median	0.92681	0.98047	NaN	1	0	Median	50939000	27099000	23840000	0	0	0	0	0	0	27073000	15675000	11398000	23866000	11424000	12442000	33973	162	32148	209200;209201	282462;282463	282463			2	
LSFSVSR	0	Unmodified	794.42865	0.42865276	3573	Q8N983	MRPL43	39S ribosomal protein L43, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		40.521	39.507	2	0.058247	32942	160511_QHF_FH_JSI10i_3	41.302	12.774			0.9841	1.0534	10.205	3	0	Plateau	1.1145	0.90297	NaN	1	0	Median	0.86897	1.0534	NaN	1	0	Median	1.1776	1.0951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236610000	118330000	118280000	82486000	34730000	47756000	86119000	49856000	36263000	68001000	33740000	34260000	0	0	0	33974	3573	32149	209202;209203;209204	282464	282464			1	
LSFYETGEIPRK	1	Unmodified	1438.7456	0.7456298	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	51.887	51.169	3	5.5999E-05	45099	160511_QHF_FH_JSI11i_3	63.091	55.225			0.77161	0.87751	26.386	6	0	Median	0.66958	0.5681	NaN	1	0	Median	0.73502	0.87751	15.495	2	0	Median	1.1223	1.1031	6.5557	2	0	Median	0.72295	0.73842	NaN	1	0	Median	681220000	365670000	315560000	52218000	35140000	17077000	98195000	45372000	52822000	279030000	135280000	143750000	251780000	149880000	101900000	33975	153	32150	209205;209206;209207;209208;209209;209210	282465;282466;282467;282468;282469;282470	282465			6	
LSGAQADLHIEDGDSIR	0	Unmodified	1795.8701	0.87005504	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	49.225	48.243	3	0.0056484	41616	160511_QHF_FH_JSI11i_2	56.149	46.865			1.0838	1.1418	4.6841	4	0	Median	1.2472	1.0648	NaN	1	0	Median	0.98278	1.1905	NaN	1	0	Median	1.1443	1.1521	NaN	1	0	Median	1.0265	1.1316	NaN	1	0	Median	244290000	115940000	128350000	55464000	24914000	30551000	57545000	30406000	27139000	72072000	28929000	43143000	59204000	31692000	27512000	33976	706	32151	209211;209212;209213;209214	282471	282471			0	
LSGEAFDINK	1	Unmodified	1092.5451	0.54513908	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS		By matching		1.5	0.5	1	1								1		1		45.069	44.345	2	0.060467	38744	160511_QHF_FH_JSI9i_2	33.426	21.657			1.1069	1.0095	19.108	2	0	Median	1.0431	0.8819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1746	1.1555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	247090000	114850000	132240000	54077000	30250000	23827000	0	0	0	193020000	84603000	108410000	0	0	0	33977	3736	32152	209215;209216	282472	282472			1	
LSGEYEK	1	Unmodified	824.3916	0.39159855	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.832	10.448	2	0.035999	7904	160511_QHF_FH_JSI9i_1	49.358	15.62			0.92681	0.9377	5.5434	4	0	Median	1.0542	0.85475	NaN	1	0	Median	0.82887	0.96836	NaN	1	0	Median	0.95889	0.92272	NaN	1	0	Median	0.89581	0.95292	NaN	1	0	Median	4918500000	2444000000	2474600000	1357000000	665720000	691320000	1502700000	813850000	688890000	1132800000	508950000	623870000	925950000	455450000	470490000	33978	1417	32153	209217;209218;209219;209220	282473	282473			1	
LSGFSFK	1	Unmodified	784.41194	0.41194006	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	49.643	48.823	2	0.039053	43048	160511_QHF_FH_JSI11i_3	47.849	24.829			0.86997	0.8959	16.692	7	0	Median	0.86997	0.72448	NaN	1	0	Median	0.6935	0.82405	11.822	2	0	Median	0.94532	0.92875	3.7624	2	0	Median	0.96713	1.0288	22.799	2	0	Median	5293100000	2842800000	2450300000	428140000	218540000	209600000	1208900000	734620000	474320000	1727900000	892220000	835730000	1928000000	997440000	930600000	33979	1329	32154	209221;209222;209223;209224;209225;209226;209227	282474;282475;282476;282477	282474			4	
LSGFSFKK	2	Unmodified	912.5069	0.50690308	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.75			11						4	3	3	4	5	39.024	36.123	2;3	0.00072749	30214	160511_QHF_FH_JSI10i_3	69.423	50.693			1.0076	0.91059	75.563	15	7	Median	1.0856	0.85176	24.965	3	1	Plateau	0.76275	0.88038	16.958	3	1	Plateau	1.3847	1.3184	111.55	4	1	Median	0.71874	0.73469	98.939	5	4	Median	6932300000	3090200000	3842100000	1897300000	768600000	1128700000	1391500000	731490000	660050000	1352300000	526560000	825720000	2291200000	1063600000	1227600000	33980	1329	32155	209228;209229;209230;209231;209232;209233;209234;209235;209236;209237;209238;209239;209240;209241;209242	282478;282479;282480;282481;282482;282483;282484;282485;282486;282487;282488;282489;282490;282491;282492;282493;282494;282495;282496;282497;282498;282499;282500;282501;282502;282503	282484			26	
LSGGDDDAAGQFFPEAAQVAYQMWELSAVAR	0	Unmodified	3299.5193	0.51934162	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.3	90.878	3	0.00014737	52220	160513_QHF_FH_JSI11Kac_6	65.587	48.511			1.2661	1.2355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2661	1.2355	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31680000	17698000	13982000	0	0	0	0	0	0	31680000	17698000	13982000	0	0	0	33981	891	32156	209243	282504	282504			1	
LSGGGDWHIAYVLLYGPR	0	Unmodified	1973.0159	0.015931421	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	2.24			1	1					35	16	7	9	5	92.749	84.668	2;3;4	1.1351E-128	45350	160513_QHF_FH_JSI9Kac_6	281.12	243.94			1.1032	1.0308	19.925	32	15	Median	1.2029	1.0592	20.764	12	6	Median	0.78532	0.92511	22.515	7	3	Median	1.107	1.0617	20.01	8	4	Median	0.927	0.96139	8.4033	5	2	Median	24914000000	12585000000	12328000000	4849600000	2013500000	2836100000	9508500000	5324400000	4184100000	5521500000	2673600000	2847900000	5033900000	2573700000	2460200000	33982	1824	32157	209244;209245;209246;209247;209248;209249;209250;209251;209252;209253;209254;209255;209256;209257;209258;209259;209260;209261;209262;209263;209264;209265;209266;209267;209268;209269;209270;209271;209272;209273;209274;209275;209276;209277;209278;209279;209280	282505;282506;282507;282508;282509;282510;282511;282512;282513;282514;282515;282516;282517;282518;282519;282520;282521;282522;282523;282524;282525;282526;282527;282528;282529;282530;282531;282532;282533;282534;282535;282536;282537;282538;282539;282540;282541;282542;282543	282522			38	
LSGGLGAGSCR	0	Unmodified	1033.4975	0.49747738	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	16.732	16.314	2	0.0089202	13081	160511_QHF_FH_JSI12i_3	49.16	28.601		+	0.84528	0.88201	27.216	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70405	0.84041	16.858	2	0	Median	0.88093	0.82165	NaN	1	0	Median	1.3372	1.3861	NaN	1	0	Median	385410000	219090000	166320000	0	0	0	153280000	98894000	54383000	96902000	60010000	36891000	135230000	60188000	75045000	33983	65	32158	209281;209282;209283;209284	282544;282545;282546	282546			3	
LSGHQFENYSFK	1	Unmodified	1455.6783	0.67827852	5737	Q9Y6M1	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.5	42.389	3	5.5337E-05	37349	160511_QHF_FH_JSI11i_3	78.324	68.252			1.0655	1.0471	3.6827	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1488	1.0747	NaN	1	0	Median	0.98825	1.0202	NaN	1	0	Median	120280000	62283000	57997000	0	0	0	0	0	0	45307000	17921000	27386000	74973000	44362000	30611000	33984	5737	32159	209285;209286	282547;282548;282549	282548			3	
LSGKPQNAPEGYQNR	1	Unmodified	1657.8172	0.81723161	2312	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			16.351	15.318	3	0.0054739	12073	160511_QHF_FH_JSI9i_3	43.813	32.121			1.0341	1.0014	5.3222	2	0	Median	1.2098	0.96441	NaN	1	0	Median	0.88389	1.0398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97939000	50847000	47091000	53265000	22172000	31093000	44674000	28676000	15998000	0	0	0	0	0	0	33985	2312	32160	209287;209288	282550;282551	282551			2	
LSGLPKHR	1	Acetyl (K)	948.5505	0.55049923	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	28.098	19.602	2;3	0.0019885	11532	160513_QHF_FH_JSI10Kac_6	79.906	43.511			0.34443	0.37116	259.98	6	1	Median	NaN	NaN	NaN	0	0	Median	16.677	19.77	324.03	2	1	Median	0.26496	0.2534	2.2	2	0	Median	0.34443	0.37116	8.0016	2	0	Median	779260000	472520000	306750000	0	0	0	204850000	21030000	183820000	465970000	369970000	96002000	108430000	81514000	26920000	33986	864	32161	209289;209290;209291;209292;209293;209294	282552;282553;282554;282555;282556	282556	562		5	
LSGLSFK	1	Unmodified	750.42759	0.42759012	1639	P49006	MARCKSL1	MARCKS-related protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	43.974	43.363	2	0.034446	36908	160511_QHF_FH_JSI12i_3	50.127	7.003			1.0425	1.0227	7.1255	3	0	Plateau	1.1123	0.90036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0223	0.97665	NaN	1	0	Median	1.0425	1.0377	NaN	1	0	Median	1738200000	780320000	957840000	188090000	82065000	106030000	0	0	0	648750000	292660000	356080000	901320000	405600000	495720000	33987	1639	32162	209295;209296;209297	282557;282558;282559	282559			3	
LSGLVFFPHLDR	0	Unmodified	1399.7612	0.76122028	5511	Q9Y2C4	EXOG	Nuclease EXOG, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.538	75.295	3	0.00018417	41296	160513_QHF_FH_JSI11Kac_6	68.034	64.119			0.88606	0.95586	16.396	4	0	Median	1.2661	1.0739	NaN	1	0	Median	0.75627	0.9059	NaN	1	0	Median	1.0381	1.0086	NaN	1	0	Median	0.67725	0.73887	NaN	1	0	Median	117710000	62787000	54922000	31172000	8696300	22476000	42760000	30614000	12146000	31176000	16216000	14960000	12601000	7260900	5340100	33988	5511	32163	209298;209299;209300;209301	282560;282561;282562;282563;282564	282560			5	
LSGQDVER	0	Unmodified	902.44576	0.44575938	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	12.227	11.823	2	0.037537	9702	160511_QHF_FH_JSI12i_1	40.021	9.2849			1.2313	1.1872	19.078	4	0	Median	1.3782	1.1209	NaN	1	0	Median	1.1654	1.4238	NaN	1	0	Median	1.3009	1.2574	NaN	1	0	Median	0.85064	0.90883	NaN	1	0	Median	1232000000	649430000	582590000	291410000	148920000	142490000	283210000	152060000	131150000	302770000	156050000	146720000	354630000	192400000	162220000	33989	2185	32164	209302;209303;209304;209305	282565	282565			1	
LSGSHLTPLCYSFISYVQNK	1	Unmodified	2313.1464	0.14635325	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		83.539	75.696	3	4.4912E-19	41068	160513_QHF_FH_JSI9Kac_6	142.3	127.37			0.92637	0.97808	16.974	3	0	Median	1.1261	0.97808	NaN	1	0	Median	0.92637	1.0799	NaN	1	0	Median	0.83078	0.77578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171990000	81273000	90714000	37639000	16432000	21207000	80686000	38801000	41885000	53663000	26040000	27622000	0	0	0	33990	5034	32165	209306;209307;209308	282566;282567;282568;282569	282568			4	
LSGSNPYTTVTPQIINSK	1	Unmodified	1919	6.5851E-06	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								3	2	4	3	64.46	63.726	2;3	4.959E-66	58041	160511_QHF_FH_JSI11i_1	227.63	195.37			1.0064	1.0628	59.224	12	2	Median	0.49087	0.41475	3.89	3	1	Median	0.50365	0.60672	6.6373	2	0	Median	1.7571	1.7601	18.016	4	0	Median	1.0617	1.12	5.7888	3	1	Plateau	1625700000	786690000	839010000	383870000	248560000	135320000	189000000	123210000	65791000	592530000	175490000	417040000	460300000	239440000	220860000	33991	361	32166	209309;209310;209311;209312;209313;209314;209315;209316;209317;209318;209319;209320	282570;282571;282572;282573;282574;282575;282576;282577;282578;282579;282580;282581;282582;282583;282584;282585;282586;282587;282588;282589	282572			19	
LSGSNPYTTVTPQIINSKWEK	2	Unmodified	2362.2169	0.21687565	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		71.76	70.783	3	0.00078232	58168	160511_QHF_FH_JSI9i_3	46.578	39.044			0.37409	0.33205	59.656	3	1	Plateau	0.36364	0.30007	NaN	1	0	Median	0.68801	0.77526	NaN	1	0	Median	0.96828	0.90207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78568000	40452000	38115000	27961000	20128000	7833000	23035000	12463000	10572000	27572000	7861200	19711000	0	0	0	33992	361	32167	209321;209322;209323	282590;282591;282592;282593;282594	282593			5	
LSGTGSAGATIR	0	Unmodified	1089.5778	0.57783619	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.52	4	4	1				2	1		3	2	3	4	20.34	18.325	2	0.00028971	15018	160511_QHF_FH_JSI11i_2	74.841	37.283			1.0162	1.0155	12.674	11	1	Median	1.0809	0.92417	9.4424	3	0	Median	0.85904	1.0323	3.4446	2	0	Median	0.96485	0.97319	5.2813	2	0	Median	1.0631	1.1234	12.494	4	1	Median	3742500000	1895300000	1847200000	741760000	342500000	399270000	909690000	468610000	441080000	951740000	497180000	454560000	1139300000	587010000	552280000	33993	1460	32168	209324;209325;209326;209327;209328;209329;209330;209331;209332;209333;209334;209335	282595;282596;282597;282598;282599;282600;282601;282602;282603;282604;282605;282606;282607;282608;282609	282604			15	
LSGTVGVAAVTAGPGLTNTVTAVK	1	Unmodified	2183.2161	0.21614737	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	78.819	78.251	3	4.1323E-07	67907	160511_QHF_FH_JSI12i_3	69.913	61.204			0.81732	0.88352	27.381	8	0	Median	1.2658	1.0669	NaN	1	0	Median	0.77353	0.92994	11.553	2	0	Median	0.7107	0.69897	42.871	2	0	Median	0.79024	0.86596	27.779	3	0	Median	241790000	126350000	115440000	23209000	8361000	14848000	64995000	37232000	27763000	66528000	33239000	33289000	87059000	47516000	39543000	33994	10	32169	209336;209337;209338;209339;209340;209341;209342;209343	282610;282611;282612;282613;282614;282615;282616	282616			6	
LSGVMVPAPIQDLEALR	0	Unmodified	1807.9866	0.98660513	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	101.4	101.29	2	6.7417E-33	89815	160511_QHF_FH_JSI10i_2	154.86	123.43			1.0312	1.0053	12.735	4	1	Median	1.0756	0.91338	NaN	1	0	Median	0.72998	0.90328	NaN	1	0	Median	1.1249	1.1541	NaN	1	0	Median	0.98858	1.1065	NaN	1	1	Median	1635400000	766410000	869030000	320720000	154270000	166450000	362620000	171940000	190680000	517040000	243490000	273550000	435060000	196710000	238350000	33995	5227	32170	209344;209345;209346;209347;209348	282617;282618;282619;282620	282620			4	
LSGVPDAWTYFVK	1	Unmodified	1481.7555	0.7554662	5833				yes	yes	0	0	0	0				By MS/MS	3	0			1										1	36.058	35.912	3	0.016362	30511	160511_QHF_FH_JSI12i_3	35.737	24.681	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33996	5833	32171	209349	282621	282621			1	
LSGVQQPSEGVGGGR	0	Unmodified	1426.7165	0.71645494	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.999	26.45	2	0.00023688	23613	160511_QHF_FH_JSI12i_1	84.479	63.609			1.0277	1.0544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0277	1.0544	NaN	1	0	Median	34105000	17551000	16554000	0	0	0	0	0	0	0	0	0	34105000	17551000	16554000	33997	4808	32172	209350	282622;282623;282624	282623			3	
LSGWGNVSKPSGTTK	2	Unmodified	1517.7838	0.78380622	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		32.441	31.737	3	0.0028635	27671	160511_QHF_FH_JSI11i_3	58.83	40.234			1.0622	1.0273	39.255	4	2	Median	1.3518	1.0788	NaN	1	0	Median	0.83467	0.9783	NaN	1	0	Median	1.1476	1.0585	67.572	2	2	Median	NaN	NaN	NaN	0	0	Median	398370000	198610000	199760000	95101000	41381000	53720000	97037000	53108000	43930000	206230000	104130000	102110000	0	0	0	33998	3172	32173	209351;209352;209353;209354	282625;282626;282627;282628	282626			4	
LSGWLAQQEDAHR	0	Unmodified	1509.7324	0.73243935	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			40.097	38.589	3	0.03257	32291	160511_QHF_FH_JSI10i_3	32.624	27.308			1.0115	1.0048	46.793	2	0	Median	1.6795	1.3989	NaN	1	0	Median	0.60913	0.72175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31679000	15841000	15837000	16233000	6255200	9977400	15446000	9586000	5860000	0	0	0	0	0	0	33999	3452	32174	209355;209356	282629	282629			0	
LSHANSAVVLSAVK	1	Unmodified	1394.7882	0.78816332	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.55		5	8					2	8	8	6	5	4	43.389	38.772	2;3	3.7013E-22	33663	160511_QHF_FH_JSI11i_3	181.98	143.89			1.0765	1.0015	20.756	23	2	Median	1.3434	1.1409	20.02	8	0	Median	0.85534	1.0517	25.034	6	1	Median	0.91439	0.86845	17.89	5	1	Median	0.90154	0.94945	3.7321	4	0	Median	7889700000	3703700000	4186100000	1130100000	514240000	615830000	1483100000	844050000	639030000	2126000000	947040000	1179000000	3150600000	1398300000	1752300000	34000	2046;2296	32175	209357;209358;209359;209360;209361;209362;209363;209364;209365;209366;209367;209368;209369;209370;209371;209372;209373;209374;209375;209376;209377;209378;209379	282630;282631;282632;282633;282634;282635;282636;282637;282638;282639;282640;282641;282642;282643;282644;282645;282646;282647;282648;282649;282650;282651;282652;282653;282654;282655;282656;282657;282658;282659;282660;282661;282662;282663;282664;282665;282666;282667;282668;282669;282670	282631			41	
LSHEGPGSELPAGALYR	0	Unmodified	1752.8795	0.87949752	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	48.349	47.918	2;3	1.3271E-08	40919	160511_QHF_FH_JSI12i_3	106.38	103.52			1.088	1.0975	9.3308	7	0	Median	1.4789	1.2405	NaN	1	0	Median	0.87065	1.0809	NaN	1	0	Median	0.98974	1.0976	7.6396	3	0	Plateau	1.1592	1.1476	6.31	2	0	Median	787030000	359940000	427100000	73372000	26876000	46496000	167580000	91617000	75965000	337890000	159600000	178290000	208190000	81842000	126350000	34001	2516	32176	209380;209381;209382;209383;209384;209385;209386	282671;282672;282673;282674;282675;282676;282677;282678;282679;282680;282681;282682;282683	282681			13	
LSHETVTIELK	1	Unmodified	1268.6976	0.69761697	2001	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.1	6.19		3						1	7	3	3	3	2	48.143	41.183	2;3	4.9142E-05	21858	160513_QHF_FH_JSI9Kac_6	89.266	77.053			0.94778	1.0754	21.749	10	0	Median	0.89231	0.7802	34.064	3	0	Median	0.78971	0.96659	14.805	2	0	Median	1.171	1.1019	7.743	3	0	Plateau	0.94778	1.0417	10.585	2	0	Median	334740000	173280000	161460000	44888000	22980000	21908000	74516000	48729000	25787000	119590000	48655000	70932000	95746000	52912000	42833000	34002	2001	32177	209387;209388;209389;209390;209391;209392;209393;209394;209395;209396;209397	282684;282685;282686;282687;282688	282685			5	
LSHFSLQPVLDSLYSK	1	Unmodified	1832.9672	0.96724989	4227	Q96RT7	TUBGCP6	Gamma-tubulin complex component 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		92.24	92.24	3	8.1543E-05	82225	160511_QHF_FH_JSI11i_3	70.197	57.814			0.54597	0.50161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54597	0.50161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21021000	11357000	9664300	0	0	0	0	0	0	21021000	11357000	9664300	0	0	0	34003	4227	32178	209398	282689	282689			1	
LSHLKPSSEGLAIVTK	2	Unmodified	1678.9618	0.96177059	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	44.841	44.048	3;4	0.00027089	36658	160511_QHF_FH_JSI9i_3	75.463	62.63			0.68302	0.59804	28.136	4	4	Median	0.68424	0.54826	NaN	1	1	Median	0.35517	0.40325	NaN	1	1	Median	0.76154	0.7137	12.712	2	2	Median	NaN	NaN	NaN	0	0	Median	975590000	513410000	462180000	215640000	93136000	122500000	161750000	109860000	51887000	598200000	310410000	287790000	0	0	0	34004	962	32179	209399;209400;209401;209402;209403	282690;282691;282692;282693;282694	282693			5	
LSHLLSEKPEDK	2	Unmodified	1394.7405	0.74054442	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							1	3	6	2	22.227	21.726	2;3;4	6.1411E-06	17776	160511_QHF_FH_JSI12i_3	104.79	29.501			1.1322	1.2012	141.43	9	9	Median	1.4643	1.2012	NaN	1	1	Median	1.1322	1.375	137.57	3	3	Median	1.3815	6.8143	185.84	4	4	Linear	0.3993	0.39956	NaN	1	1	Median	1096200000	409830000	686350000	20775000	3906300	16869000	241320000	105000000	136320000	772070000	259050000	513030000	62008000	41875000	20134000	34005	3955	32180	209404;209405;209406;209407;209408;209409;209410;209411;209412;209413;209414;209415	282695;282696;282697;282698;282699;282700;282701;282702;282703;282704;282705;282706;282707	282707			13	
LSHMPPLPLNPSSNPTSLNTAPPVQR	0	Unmodified	2764.433	0.43303321	148	O00512	BCL9	B-cell CLL/lymphoma 9 protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.178	75.762	3	2.5388E-06	63527	160511_QHF_FH_JSI10i_3	59.429	52.705			0.72223	0.84524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72223	0.84524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9729800	5896100	3833700	0	0	0	9729800	5896100	3833700	0	0	0	0	0	0	34006	148	32181	209416	282708	282708			1	
LSHNGIFTLYSYRDPNTIETLQSFGK	1	Unmodified	3000.4981	0.49813589	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.01	75.767	4	6.9737E-65	41636	160513_QHF_FH_JSI11Kac_6	192.18	174.18			0.97645	1.0186	10.629	4	0	Median	1.3121	1.1074	NaN	1	0	Median	0.90779	1.0787	NaN	1	0	Median	1.0503	0.96188	NaN	1	0	Median	0.8385	0.88027	NaN	1	0	Median	451260000	214120000	237140000	141200000	56217000	84982000	215530000	102320000	113210000	56673000	32592000	24080000	37857000	22991000	14866000	34007	2900	32182	209417;209418;209419;209420	282709;282710;282711;282712;282713;282714;282715;282716	282709			8	
LSHPLLEQLLPALR	0	Unmodified	1598.9508	0.95081197	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		97.046	96.791	3	2.7523E-05	80492	160511_QHF_FH_JSI10i_3	91.62	88.986			0.75408	0.7904	21.009	3	0	Plateau	1.3039	1.1371	NaN	1	0	Median	0.67018	0.76972	NaN	1	0	Median	0.85881	0.8175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26956000	12669000	14287000	4607200	1303300	3303900	11265000	6936000	4329400	11083000	4429900	6653400	0	0	0	34008	3375	32183	209421;209422;209423;209424	282717;282718;282719;282720;282721;282722;282723;282724	282719			8	
LSHQITSR	0	Unmodified	940.50903	0.50902834	496	O75298	RTN2	Reticulon-2	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			7.6861	7.1493	3	0.0079325	4981	160511_QHF_FH_JSI9i_3	43.635	20.854			1.4173	1.3427	20.947	2	0	Median	1.4436	1.1579	NaN	1	0	Median	1.3916	1.5571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250450000	113620000	136830000	146370000	63923000	82444000	104080000	49693000	54389000	0	0	0	0	0	0	34009	496	32184	209425;209426	282725	282725			1	
LSHSNPTILFDYILSQIQK	1	Unmodified	2216.1841	0.18411896	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		101.15	99.639	3	4.7727E-19	91337	160511_QHF_FH_JSI11i_3	166.6	152.44			1.0517	1.1187	22.754	4	2	Median	1.7699	1.4579	NaN	1	1	Median	0.88183	1.0291	25.006	2	1	Median	1.079	1.0191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	475260000	226500000	248760000	17565000	4694900	12870000	176890000	86603000	90283000	280810000	135200000	145610000	0	0	0	34010	3675	32185	209427;209428;209429;209430	282726;282727;282728;282729;282730	282726			5	
LSHSSGYAQLNTYSR	0	Unmodified	1682.8012	0.8012472	4134	Q96J84	KIRREL	Kin of IRRE-like protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				29.734	28.354	3	0.00032104	23162	160511_QHF_FH_JSI9i_3	75.764	67.165			1.0826	0.90428	NaN	1	1	Median	1.0826	0.90428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14124000	5360400	8763400	14124000	5360400	8763400	0	0	0	0	0	0	0	0	0	34011	4134	32186	209431	282731	282731			1	
LSHWVDIALK	1	Unmodified	1180.6604	0.66044361	5009	Q9NUP7	TRMT13	tRNA:m(4)X modification enzyme TRM13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	61.576	60.751	3	0.00022669	52119	160511_QHF_FH_JSI12i_3	60.434	42.166			0.75794	0.77352	72.3	4	2	Median	0.25794	0.20936	NaN	1	1	Median	0.84125	0.9936	NaN	1	0	Median	0.68288	0.63604	NaN	1	1	Median	0.96133	0.94072	NaN	1	0	Median	112260000	67010000	45251000	43344000	34089000	9254800	8767900	4559600	4208300	16457000	8545700	7911700	43691000	19815000	23876000	34012	5009	32187	209432;209433;209434;209435;209436	282732;282733;282734;282735;282736;282737;282738	282737			7	
LSHYLQK	1	Unmodified	887.4865	0.48650199	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	2	3	2	2	14.133	11.569	2;3	0.0025601	9431	160511_QHF_FH_JSI11i_3	68.915	33.62			1.0863	1.0991	34.433	7	2	Median	2.0563	1.6826	28.996	2	1	Median	0.89788	1.0318	NaN	1	0	Median	1.344	1.3107	53.383	2	1	Median	0.98872	0.99445	14.15	2	0	Median	3811100000	1605200000	2205900000	486100000	211220000	274890000	574220000	341620000	232600000	518990000	192080000	326910000	2231700000	860260000	1371500000	34013	1126	32188	209437;209438;209439;209440;209441;209442;209443;209444;209445	282739;282740;282741;282742;282743;282744;282745;282746;282747;282748	282739			10	
LSIFDANESGFESYEALPQHK	1	Unmodified	2381.1176	0.11755554	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	84.712	84.367	3	1.2717E-14	74329	160511_QHF_FH_JSI11i_2	127.1	119.65			1.0274	1.1509	11.535	4	1	Median	NaN	NaN	NaN	0	0	Median	1.029	1.2612	NaN	1	1	Median	1.1912	1.1628	14.382	2	0	Median	1.011	1.0379	NaN	1	0	Median	309190000	142410000	166780000	0	0	0	72294000	30090000	42203000	138750000	68016000	70738000	98139000	44302000	53837000	34014	1273	32189	209446;209447;209448;209449	282749;282750;282751;282752;282753;282754;282755	282752			7	
LSIFMENK	1	Oxidation (M)	996.49502	0.49501776	3894	Q92845	KIFAP3	Kinesin-associated protein 3	yes	yes	0	0	1	0	By MS/MS				13	0						1				1				17.612	-0.19922	2	0.009324	5417	160513_QHF_FH_JSI9Kac_3	79.469	9.6569			1.09	0.89758	NaN	1	1	Median	1.09	0.89758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65465000	31086000	34379000	65465000	31086000	34379000	0	0	0	0	0	0	0	0	0	34015	3894	32190	209450	282756	282756		2329	1	
LSIIFPLWK	1	Unmodified	1115.6743	0.67430276	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	98.507	94.27	2	5.4139E-05	50941	160513_QHF_FH_JSI10Kac_6	120.46	74.441			1.0768	0.979	19.841	8	0	Median	1.2862	1.0589	7.1112	2	0	Median	0.91716	1.0638	39.499	2	0	Median	1.1514	1.0969	20.059	2	0	Median	0.83196	0.86958	8.0346	2	0	Median	924070000	434600000	489460000	153500000	62090000	91415000	228360000	108890000	119470000	193120000	81983000	111140000	349090000	181640000	167440000	34016	135	32191	209451;209452;209453;209454;209455;209456;209457;209458	282757;282758;282759;282760;282761;282762;282763;282764	282764			8	
LSILSLLGHVIR	0	Unmodified	1319.8289	0.82890592	3847	Q92574	TSC1	Hamartin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.502	86.468	3	1.3674E-19	50399	160513_QHF_FH_JSI10Kac_6	150.06	142.69			1.024	1.1071	13.843	3	0	Median	1.0758	0.91069	NaN	1	0	Median	1.0021	1.1901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.024	1.1071	NaN	1	0	Median	292920000	143840000	149080000	60470000	31506000	28964000	216560000	105630000	110930000	0	0	0	15896000	6703800	9192400	34017	3847	32192	209459;209460;209461;209462	282765;282766;282767;282768;282769;282770;282771	282770			7	
LSILTYVSQYYNYFHGR	0	Unmodified	2123.0476	0.04762548	3456	Q8IY33	MICALL2	MICAL-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	95.478	87.084	3	1.3053E-70	51311	160513_QHF_FH_JSI10Kac_6	212.7	199.11			1.1373	0.92206	9.946	4	0	Linear	1.2012	1.0201	NaN	1	0	Median	0.78841	0.92746	NaN	1	0	Median	1.1513	1.0818	NaN	1	0	Median	1.1235	1.1746	NaN	1	0	Median	646220000	317780000	328440000	159110000	71791000	87319000	230070000	127510000	102560000	147070000	65001000	82072000	109970000	53483000	56488000	34018	3456	32193	209463;209464;209465;209466	282772;282773	282773			2	
LSILYPATTGR	0	Unmodified	1190.6659	0.66592292	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.52	5	4	4				1	4	3	5	5	5	6	64.265	59.917	2	4.4981E-13	51632	160511_QHF_FH_JSI12i_3	147.75	93.597			1.0352	1.0335	16.413	21	4	Median	1.1898	1.0335	25.078	5	1	Median	0.78345	0.94009	13.036	5	2	Median	1.0525	1.0747	5.7488	5	0	Median	0.96692	1.0187	17.312	6	1	Median	27362000000	13291000000	14071000000	4848100000	2172500000	2675600000	6388800000	3190100000	3198700000	8522300000	4312600000	4209600000	7603200000	3615700000	3987400000	34019	1333	32194	209467;209468;209469;209470;209471;209472;209473;209474;209475;209476;209477;209478;209479;209480;209481;209482;209483;209484;209485;209486;209487	282774;282775;282776;282777;282778;282779;282780;282781;282782;282783;282784;282785;282786;282787;282788;282789;282790;282791;282792;282793;282794;282795;282796;282797;282798;282799;282800;282801;282802;282803;282804;282805;282806	282803			33	
LSIMTSENHLNNSDK	1	Unmodified	1701.7992	0.79919829	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.58		6	5						3	3	3	6	2	40.039	37.36	2;3	4.6662E-22	31727	160511_QHF_FH_JSI12i_3	209.64	179.83			0.8871	0.89096	32.455	13	3	Median	0.9417	0.82106	61.932	3	1	Median	0.73864	0.90996	12.112	3	0	Median	0.99135	0.96843	31.38	5	2	Median	0.80798	0.84003	4.761	2	0	Median	1707700000	825240000	882480000	150670000	69104000	81566000	317420000	167230000	150190000	782910000	382000000	400910000	456720000	206910000	249810000	34020	3965	32195	209488;209489;209490;209491;209492;209493;209494;209495;209496;209497;209498;209499;209500;209501	282807;282808;282809;282810;282811;282812;282813;282814;282815;282816;282817;282818;282819;282820;282821;282822;282823;282824;282825	282825			19	
LSIPTYGLQCTR	0	Unmodified	1407.718	0.71803484	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.93	3.71	5	4	4						1	2	3	5	4	66.294	65.642	2	2.2876E-05	56732	160511_QHF_FH_JSI12i_3	121.6	109.37			1.043	1.1243	25.874	12	6	Median	1.5272	1.3259	NaN	1	0	Median	1.162	1.3659	8.1052	3	1	Median	0.81626	0.78727	5.5931	4	2	Median	1.1009	1.1243	13.128	4	3	Median	3538000000	1734500000	1803500000	282150000	97866000	184280000	825730000	390620000	435110000	1290500000	713970000	576540000	1139600000	532010000	607610000	34021	1650	32196	209502;209503;209504;209505;209506;209507;209508;209509;209510;209511;209512;209513;209514;209515	282826;282827;282828;282829;282830;282831;282832;282833;282834;282835;282836;282837;282838;282839;282840;282841	282840			16	
LSISGWFHGPSLTRPPNYFEPPIPR	0	Unmodified	2864.4762	0.47621866	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.703	81.984	4	8.1142E-05	46219	160513_QHF_FH_JSI10Kac_6	62.605	51.897			0.81464	0.96566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81464	0.96566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204840000	114750000	90087000	0	0	0	204840000	114750000	90087000	0	0	0	0	0	0	34022	3536	32197	209516	282842	282842			1	
LSISTQFLSSLQK	1	Unmodified	1450.8031	0.80314468	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				90.334	89.209	2	0.0055565	73060	160511_QHF_FH_JSI9i_3	53.528	39.109			1.1029	0.9455	NaN	1	0	Median	1.1029	0.9455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9379900	4248200	5131700	9379900	4248200	5131700	0	0	0	0	0	0	0	0	0	34023	325	32198	209517	282843	282843			1	
LSIVPVR	0	Unmodified	782.50142	0.50142377	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	2	3	2	48.121	47.385	2	0.0041237	40706	160511_QHF_FH_JSI12i_2	100.07	59.146			0.90554	0.95227	20.885	9	1	Median	1.4711	1.2172	26.894	2	1	Median	0.86922	1.0336	6.5355	2	0	Median	0.82673	0.87865	9.4226	3	0	Plateau	0.76867	0.80593	17.17	2	0	Median	3457800000	1797000000	1660800000	535260000	225130000	310130000	389550000	210900000	178650000	1338100000	704540000	633530000	1194900000	656410000	538530000	34024	1084	32199	209518;209519;209520;209521;209522;209523;209524;209525;209526	282844;282845;282846;282847;282848;282849;282850;282851;282852;282853;282854;282855;282856;282857	282847			14	
LSIVPVRR	0	Unmodified	938.60253	0.6025348	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			35.732	34.776	3	0.017011	30477	160511_QHF_FH_JSI10i_2	32.841	9.412			0.57473	0.71062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57473	0.71062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24660000	16011000	8649300	0	0	0	24660000	16011000	8649300	0	0	0	0	0	0	34025	1084	32200	209527	282858	282858			1	
LSIYNALK	1	Unmodified	920.53312	0.53311783	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.223	57.688	2	0.0042745	48271	160511_QHF_FH_JSI10i_3	69.198	39.013			0.97378	1.1022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97378	1.1022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129550000	75346000	54206000	0	0	0	129550000	75346000	54206000	0	0	0	0	0	0	34026	2636	32201	209528;209529	282859;282860	282859			2	
LSIYNALKK	2	Unmodified	1048.6281	0.62808085	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			49.387	47.819	3	0.046597	39960	160511_QHF_FH_JSI10i_3	26.045	18.4			0.53366	0.62084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53366	0.62084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37375000	24435000	12940000	0	0	0	37375000	24435000	12940000	0	0	0	0	0	0	34027	2636	32202	209530	282861	282861			1	
LSKFDSER	1	Acetyl (K)	1022.5033	0.50327426	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		36.851	27.403	2	0.046851	16825	160513_QHF_FH_JSI11Kac_4	56.432	26.265			0.25937	0.2534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25937	0.2534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9441700	7106100	2335600	0	0	0	0	0	0	9441700	7106100	2335600	0	0	0	34028	4017	32203	209531	282862	282862			1	
LSKHCSQVDSVR	1	Acetyl (K)	1456.7093	0.70926107	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		27.127	17.995	3	0.0025046	10825	160513_QHF_FH_JSI11Kac_6	53.001	47.922			0.27976	0.27124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27976	0.27124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8405400	6743800	1661600	0	0	0	0	0	0	8405400	6743800	1661600	0	0	0	34029	2522	32204	209532	282863	282863	2523		1	
LSKPPFQTNPSPEMVSK	2	Unmodified	1885.9608	0.96078431	2839	Q4LE39	ARID4B	AT-rich interactive domain-containing protein 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			50.61	49.028	3	6.3907E-05	40954	160511_QHF_FH_JSI10i_3	75.548	69.426			0.92209	0.89772	14.623	2	0	Median	1.2062	0.99551	NaN	1	0	Median	0.70491	0.80953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64801000	31227000	33573000	32544000	13340000	19204000	32257000	17888000	14369000	0	0	0	0	0	0	34030	2839	32205	209533;209534	282864;282865;282866;282867;282868;282869;282870	282865			7	
LSLACLAMWLR	0	Oxidation (M)	1348.6995	0.699548	5812				yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	5.6	5.2			4						1	2	2		1	71.045	67.974	2	0.0024544	57516	160511_QHF_FH_JSI10i_3	62.2	14.377	+		1.1556	0.97266	20.704	5	0	Linear	1.2049	0.97266	0	2	0	Median	1.0081	1.1777	0	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65502	0.70987	NaN	1	0	Median	465990000	202930000	263060000	248300000	93287000	155010000	195250000	96445000	98805000	0	0	0	22443000	13201000	9241400	34031	5812	32206	209535;209536;209537;209538;209539	282871;282872;282873	282871		2756	3	
LSLATFLLGASVLALPLLTR	0	Unmodified	2068.266	0.2659981	443	O60725	ICMT	Protein-S-isoprenylcysteine O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	104.98	96.855	2;3	4.7096E-157	58686	160513_QHF_FH_JSI10Kac_6	278.84	264.05			1.1115	1.0527	16.478	5	0	Median	1.771	1.5051	NaN	1	0	Median	0.8753	1.0331	2.6635	2	0	Median	1.1115	1.0413	NaN	1	0	Median	1.1234	1.2105	NaN	1	0	Median	1453000000	776830000	676170000	61769000	28465000	33305000	1197100000	661010000	536140000	178460000	80355000	98106000	15622000	6999300	8622600	34032	443	32207	209540;209541;209542;209543;209544;209545;209546	282874;282875;282876;282877;282878;282879;282880;282881;282882	282882			9	
LSLCGEESFGTGSDHIR	0	Unmodified	1863.8421	0.84212573	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		2	4	54.09	53.457	2;3	1.495E-22	45825	160511_QHF_FH_JSI12i_3	143.88	123.64			1.1019	0.91354	26.801	5	0	Median	1.1019	0.91354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87861	0.84604	5.4559	2	0	Median	1.3004	1.393	10.874	2	0	Median	435190000	231690000	203500000	25537000	13293000	12244000	0	0	0	215700000	121160000	94536000	193950000	97231000	96722000	34033	1460	32208	209547;209548;209549;209550;209551;209552;209553	282883;282884;282885;282886;282887;282888	282885			6	
LSLDDLLQR	0	Unmodified	1071.5924	0.59242362	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			85.856	85.299	2	0.0014448	75827	160511_QHF_FH_JSI10i_2	71.692	42.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34034	1296	32209	209554;209555	282889;282890	282890			2	
LSLDDVQK	1	Unmodified	916.48656	0.48656157	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.986	40.349	2	0.0096523	36302	160511_QHF_FH_JSI11i_1	64.207	24.104			0.76411	0.85922	15.669	4	1	Linear	0.94788	0.77227	NaN	1	0	Median	0.73589	0.85709	NaN	1	0	Median	1.1448	1.1157	NaN	1	1	Median	0.82604	0.86136	NaN	1	0	Median	175150000	94778000	80369000	34805000	17871000	16934000	50934000	32288000	18646000	43339000	21940000	21399000	46070000	22680000	23390000	34035	3063	32210	209556;209557;209558;209559	282891;282892;282893	282891			3	
LSLDELHR	0	Unmodified	981.52434	0.52434406	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.48	41.798	3	0.00025474	36825	160511_QHF_FH_JSI11i_3	87.308	72.641			1.0123	1.0041	18.927	6	0	Median	1.1882	1.0369	NaN	1	0	Median	0.61472	0.75316	NaN	1	0	Median	0.8608	0.83295	21.868	2	0	Median	1.0483	1.0893	2.671	2	0	Median	519340000	264170000	255170000	57237000	22006000	35231000	66059000	42778000	23281000	207960000	109810000	98149000	188090000	89579000	98507000	34036	821	32211	209560;209561;209562;209563;209564;209565	282894;282895;282896;282897;282898;282899;282900;282901	282895			8	
LSLDELHRK	1	Unmodified	1109.6193	0.61930707	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	31.723	31.008	2;3	4.2538E-07	26722	160511_QHF_FH_JSI11i_3	115.71	88.233			1.0894	0.88294	45.554	8	1	Median	1.0894	0.88294	7.2596	2	0	Median	1.1437	1.3224	94.315	2	1	Median	1.2335	1.1671	5.2992	2	0	Median	0.66955	0.67439	11.491	2	0	Median	3169400000	1502600000	1666700000	441730000	197920000	243810000	437550000	177510000	260040000	1428100000	657960000	770130000	861990000	469250000	392750000	34037	821	32212	209566;209567;209568;209569;209570;209571;209572;209573	282902;282903;282904;282905;282906;282907;282908;282909;282910;282911;282912;282913;282914	282903			13	
LSLDGQNIYNACCTLR	0	Unmodified	1896.8822	0.88221641	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							2	1	4	3	69.445	68.72	2;3	6.5429E-137	60161	160511_QHF_FH_JSI11i_2	286.26	268.45			1.1005	1.079	23.998	9	4	Median	1.664	1.3698	37.36	2	1	Median	1.1005	1.3665	NaN	1	0	Median	0.99589	0.97491	7.2975	4	3	Median	1.3598	1.4815	5.1426	2	0	Median	641150000	305610000	335540000	81529000	32998000	48531000	67270000	36215000	31055000	334740000	169420000	165320000	157610000	66973000	90633000	34038	1281	32213	209574;209575;209576;209577;209578;209579;209580;209581;209582;209583	282915;282916;282917;282918;282919;282920;282921;282922;282923;282924;282925;282926;282927	282923			13	
LSLDLSHR	0	Unmodified	939.51378	0.51377937	3722	Q8TDM6	DLG5	Disks large homolog 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.105	37.935	3	0.006217	32302	160511_QHF_FH_JSI12i_3	40.352	22.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34039	3722	32214	209584	282928	282928			1	
LSLDVEQAPSGQHSQAQLSGQQQR	0	Unmodified	2591.2688	0.26880466	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	47.059	46.365	3	1.0195E-51	40931	160511_QHF_FH_JSI11i_3	202.73	195.28			1.1346	1.1632	10.501	6	1	Median	1.4301	1.205	NaN	1	0	Median	0.91997	1.1285	NaN	1	0	Median	1.1423	1.1014	12.025	2	0	Median	1.0902	1.1486	18.714	2	1	Median	414500000	202780000	211720000	72557000	37765000	34791000	83018000	45472000	37546000	172800000	75364000	97436000	86128000	44178000	41950000	34040	128	32215	209585;209586;209587;209588;209589;209590	282929;282930;282931;282932;282933;282934;282935;282936;282937;282938;282939;282940;282941	282931			13	
LSLEEETLWLR	0	Unmodified	1387.7347	0.73473076	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14.3	0.471							2	1			2		1	53.905	43.398	2	0.013267	22835	160513_QHF_FH_JSI10Kac_4	49.418	13.084			0.72834	0.83257	9.3807	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.63372	0.75241	9.7864	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76245	0.83965	NaN	1	0	Median	68915000	37446000	31468000	0	0	0	30451000	16224000	14227000	0	0	0	38464000	21223000	17241000	34041	2592	32216	209591;209592;209593	282942;282943;282944	282942			3	
LSLEEFIR	0	Unmodified	1005.5495	0.54949617	1468	P37235;P84074	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.241	83.408	2	0.002353	72119	160511_QHF_FH_JSI12i_2	89.296	55.938			1.076	1.1402	5.4239	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0879	1.0973	NaN	1	1	Median	1.0642	1.1848	NaN	1	1	Median	232360000	111980000	120380000	0	0	0	0	0	0	133220000	68897000	64326000	99139000	43085000	56055000	34042	1468	32217	209594;209595	282945;282946	282945			2	
LSLEFPSGYPYNAPTVK	1	Unmodified	1881.9513	0.95126548	164	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		87.192	86.756	2	0.0016299	77040	160511_QHF_FH_JSI10i_2	55.452	17.431			0.91906	1.037	10.648	4	2	Median	1.3478	1.1477	NaN	1	1	Median	0.85353	1.0284	12.926	2	0	Median	0.93651	0.95443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	305170000	155380000	149790000	55213000	23534000	31679000	190990000	106050000	84936000	58976000	25801000	33175000	0	0	0	34043	164	32218	209596;209597;209598;209599	282947;282948;282949;282950	282950			4	
LSLEGDHSTPPSAYGSVK	1	Unmodified	1843.8952	0.89520716	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.41	7	11	8				4	8	5	10	11	11	11	49.441	44.764	2;3	2.5215E-117	39652	160511_QHF_FH_JSI10i_2	276.51	262.7			0.99239	1.0231	11.736	42	10	Median	1.0797	0.93408	14.031	9	3	Median	0.81636	0.89926	8.8527	11	2	Median	1.0432	1.0629	8.1055	11	3	Median	0.97422	1.0749	10.638	11	2	Median	54666000000	27388000000	27278000000	10104000000	4528600000	5575000000	15369000000	8604100000	6764900000	11824000000	5360900000	6463100000	17369000000	8894000000	8475400000	34044	870	32219	209600;209601;209602;209603;209604;209605;209606;209607;209608;209609;209610;209611;209612;209613;209614;209615;209616;209617;209618;209619;209620;209621;209622;209623;209624;209625;209626;209627;209628;209629;209630;209631;209632;209633;209634;209635;209636;209637;209638;209639;209640;209641;209642	282951;282952;282953;282954;282955;282956;282957;282958;282959;282960;282961;282962;282963;282964;282965;282966;282967;282968;282969;282970;282971;282972;282973;282974;282975;282976;282977;282978;282979;282980;282981;282982;282983;282984;282985;282986;282987;282988;282989;282990;282991;282992;282993;282994;282995;282996;282997;282998;282999;283000;283001;283002;283003;283004;283005;283006;283007;283008;283009;283010;283011;283012;283013;283014;283015;283016;283017;283018;283019;283020;283021;283022;283023;283024;283025;283026;283027;283028;283029;283030;283031;283032;283033;283034;283035;283036;283037;283038;283039;283040;283041;283042;283043;283044;283045;283046;283047;283048;283049;283050;283051;283052;283053;283054;283055;283056;283057;283058;283059	283037			109	
LSLEGERQPK	1	Unmodified	1155.6248	0.62478638	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	20.213	20.22	3	0.0039845	16914	160511_QHF_FH_JSI11i_3	48.981	35.045			0.91754	0.86847	27.161	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77027	0.71671	NaN	1	0	Median	1.093	1.0524	NaN	1	0	Median	142550000	73651000	68898000	0	0	0	0	0	0	98014000	50141000	47873000	44536000	23510000	21026000	34045	1443	32220	209643;209644	283060;283061;283062	283060			3	
LSLEGIVVQR	0	Unmodified	1112.6554	0.65535823	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	69.743	69.1	2	0.00021826	61529	160511_QHF_FH_JSI11i_3	100.84	47.969			0.96192	1.0135	15.016	6	1	Median	1.357	1.1366	NaN	1	1	Median	0.85533	1.0274	NaN	1	0	Median	0.96192	0.92692	10.704	2	0	Median	0.97305	1.0393	26.597	2	0	Median	525230000	260790000	264430000	73908000	35004000	38904000	74903000	39258000	35645000	194670000	96785000	97880000	181750000	89748000	92001000	34046	1045	32221	209645;209646;209647;209648;209649;209650	283063;283064;283065;283066	283063			4	
LSLEQALPPEPK	1	Unmodified	1320.7289	0.7289171	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	66.827	66.267	2;3	0.0094443	58825	160511_QHF_FH_JSI9i_1	47.559	28.779			0.68751	0.72705	23.009	6	1	Median	1.0202	0.82222	NaN	1	0	Median	0.68751	0.77349	26.152	2	1	Median	0.59017	0.56611	NaN	1	0	Median	0.71327	0.71636	33.264	2	0	Median	134240000	76206000	58030000	19175000	7805800	11369000	28113000	17847000	10266000	31417000	18010000	13407000	55531000	32543000	22987000	34047	5442	32222	209651;209652;209653;209654;209655;209656;209657	283067;283068;283069;283070;283071	283071			5	
LSLFPGTHLTPYLSTSPLER	0	Unmodified	2228.1841	0.18411896	1880	P56524	HDAC4	Histone deacetylase 4	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			98.279	98.018	3	0.0039009	81052	160511_QHF_FH_JSI10i_3	43.12	29.693			0.6763	0.78998	1.533	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6763	0.78998	1.533	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19786000	9471200	10315000	0	0	0	19786000	9471200	10315000	0	0	0	0	0	0	34048	1880	32223	209658;209659	283072;283073	283072			2	
LSLGAQK	1	Unmodified	715.42284	0.4228391	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	2	2									2	2		6.0078	5.766	2	0.012433	3648	160511_QHF_FH_JSI11i_2	69.39	2.3962			0.91858	0.9513	13.72	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77216	0.92822	23.175	2	0	Median	0.95428	0.9513	4.6452	2	0	Median	NaN	NaN	NaN	0	0	Median	5946300000	3180500000	2765700000	0	0	0	2560800000	1449800000	1111000000	3385500000	1730800000	1654700000	0	0	0	34049	4761	32224	209660;209661;209662;209663	283074;283075;283076;283077;283078	283077			5	
LSLGTYASLHGR	0	Unmodified	1273.6779	0.67788459	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			55.694	47.155	3	0.0015365	25953	160513_QHF_FH_JSI10Kac_6	50.897	38.266			0.69214	0.82033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69214	0.82033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33915000	20943000	12973000	0	0	0	33915000	20943000	12973000	0	0	0	0	0	0	34050	5293	32225	209664	283079	283079			1	
LSLHSIAQNK	1	Unmodified	1109.6193	0.61930707	1780	P52735	VAV2	Guanine nucleotide exchange factor VAV2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		31.415	30.487	2;3	0.00031437	24928	160511_QHF_FH_JSI9i_3	52.6	39.644			0.43536	0.44427	49.221	3	0	Median	0.43536	0.35381	NaN	1	0	Median	0.39528	0.44427	NaN	1	0	Median	0.94892	0.9087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	167800000	94098000	73702000	65742000	34500000	31243000	40402000	29836000	10566000	61656000	29762000	31893000	0	0	0	34051	1780	32226	209665;209666;209667;209668	283080;283081;283082	283082			3	
LSLIFSHMLAELK	1	Unmodified	1500.8374	0.83742169	1214	P22681	CBL	E3 ubiquitin-protein ligase CBL	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		90.296	82.363	3	7.1745E-13	47582	160513_QHF_FH_JSI10Kac_6	124.07	0			1.6791	1.4684	44.335	3	1	Median	1.6791	1.4684	NaN	1	1	Median	0.72267	0.86214	NaN	1	0	Median	2.1262	2.0791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	230930000	100200000	130730000	65655000	25179000	40476000	75119000	45845000	29274000	90156000	29177000	60979000	0	0	0	34052	1214	32227	209669;209670;209671	283083;283084;283085;283086	283086			4	
LSLITAPR	0	Unmodified	869.53345	0.53345218	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	49.4	48.677	2	0.0025958	42953	160511_QHF_FH_JSI11i_3	86.794	61.9			0.71652	0.79252	22.051	6	2	Median	0.76495	0.65159	NaN	1	0	Median	0.64933	0.79252	4.1672	2	0	Median	1.0703	1.0393	6.527	2	1	Median	0.60371	0.62823	NaN	1	1	Median	1045800000	736730000	309100000	66623000	40030000	26593000	152910000	93523000	59390000	252330000	131030000	121300000	573960000	472140000	101820000	34053	3411	32228	209672;209673;209674;209675;209676;209677;209678	283087;283088;283089;283090;283091;283092;283093	283087			7	
LSLLCIDFNK	1	Unmodified	1221.6427	0.64274463	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	89.671	89.627	2	0.001482	77774	160511_QHF_FH_JSI12i_3	70.028	46.6			1.3508	1.3161	19.697	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1957	1.145	NaN	1	0	Median	1.526	1.5128	NaN	1	1	Median	48841000	19760000	29080000	0	0	0	0	0	0	18666000	8864200	9801700	30175000	10896000	19279000	34054	1787	32229	209679;209680;209681	283094;283095;283096	283096			3	
LSLLEVGCGTGANFK	1	Unmodified	1564.7919	0.79192806	4785	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	77.905	77.197	2	2.3122E-06	67020	160511_QHF_FH_JSI12i_3	124.21	99.369			7.3144	8.1259	98.26	4	4	Median	NaN	NaN	NaN	0	0	Median	7.3033	8.9782	NaN	1	1	Median	7.3254	7.3546	NaN	1	1	Median	3.7806	4.0437	154.58	2	2	Median	495600000	47250000	448350000	0	0	0	132560000	9774500	122790000	197520000	16217000	181300000	165520000	21258000	144260000	34055	4785	32230	209682;209683;209684;209685	283097;283098;283099;283100;283101	283100			5	
LSLLLNDISR	0	Unmodified	1142.6659	0.66592292	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	76.975	76.352	2	1.0873E-06	67826	160511_QHF_FH_JSI10i_2	126.31	76.89			1.6417	1.5219	34.88	7	3	Median	1.6475	1.4202	14.999	2	2	Median	0.70943	0.86075	NaN	1	1	Median	1.807	1.7177	17.119	2	0	Median	1.3808	1.4931	59.17	2	0	Median	1402700000	595880000	806780000	217190000	84910000	132280000	141160000	86834000	54328000	532530000	213260000	319270000	511770000	210880000	300900000	34056	2692	32231	209686;209687;209688;209689;209690;209691;209692	283102;283103;283104;283105;283106;283107;283108;283109	283108			8	
LSLLLNDISRK	1	Unmodified	1270.7609	0.76088593	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			65.408	63.911	3	4.2437E-06	53549	160511_QHF_FH_JSI10i_3	132.32	89.987			0.58366	0.55986	22.509	2	2	Median	0.5832	0.47748	NaN	1	1	Median	0.58411	0.65645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	276030000	140780000	135250000	134700000	61585000	73116000	141330000	79193000	62134000	0	0	0	0	0	0	34057	2692	32232	209693;209694	283110;283111	283110			2	
LSLLNMTFMK	1	Unmodified	1196.6297	0.62973711	5030	Q9NVF7	FBXO28	F-box only protein 28	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		89.239	79.901	2	0.0164	44698	160513_QHF_FH_JSI11Kac_6	61.56	34.43			0.86868	0.82674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86868	0.82674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48030000	23764000	24266000	0	0	0	0	0	0	48030000	23764000	24266000	0	0	0	34058	5030	32233	209695	283112	283112			1	
LSLLVLR	0	Unmodified	812.54837	0.54837396	638	O95049	TJP3	Tight junction protein ZO-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	78.317	69.956	2	0.012309	38927	160513_QHF_FH_JSI10Kac_6	78.616	27.043			1.0998	1.09	11.607	4	0	Median	1.3276	1.1315	NaN	1	0	Median	0.89154	1.05	NaN	1	0	Median	1.0032	1.0077	NaN	1	0	Median	1.2058	1.3118	NaN	1	0	Median	216580000	96143000	120440000	56246000	24128000	32119000	102490000	48026000	54465000	35805000	15869000	19936000	22041000	8119700	13921000	34059	638	32234	209696;209697;209698;209699	283113;283114;283115;283116	283115			4	
LSLMPWFHGK	1	Unmodified	1214.627	0.62703499	1517	P41240	CSK	Tyrosine-protein kinase CSK	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			10						4	6	4	2	2	79.943	76.49	2;3	0.00017301	67933	160511_QHF_FH_JSI12i_3	70.1	66.455			0.9546	0.93273	32.308	12	3	Median	1.2717	1.0262	45.79	5	2	Median	0.74332	0.9007	22.877	3	1	Plateau	1.038	0.99435	4.9351	2	0	Median	1.0189	1.0749	24.171	2	0	Median	717050000	359340000	357710000	203160000	97972000	105190000	147400000	82284000	65117000	159580000	78867000	80713000	206910000	100210000	106700000	34060	1517	32235	209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713	283117;283118;283119;283120;283121;283122;283123;283124;283125;283126;283127;283128;283129;283130;283131;283132;283133;283134;283135;283136;283137;283138;283139;283140;283141;283142;283143;283144;283145	283140			29	
LSLMYAR	0	Unmodified	852.45276	0.45275902	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.38	6.63		1	3						4	2	2	1	3	51.222	45.951	2	4.9638E-05	25272	160513_QHF_FH_JSI10Kac_6	126.24	100.13			0.93222	0.96675	18.867	8	0	Median	1.3255	1.088	4.6688	2	0	Median	0.93222	1.0862	5.5355	2	0	Median	0.95244	0.89481	NaN	1	0	Median	0.72603	0.76927	6.7192	3	0	Median	2749200000	1428800000	1320400000	758460000	326590000	431870000	737440000	364150000	373290000	206700000	112280000	94413000	1046700000	625780000	420870000	34061	2094	32236	209714;209715;209716;209717;209718;209719;209720;209721	283146;283147;283148;283149;283150;283151	283151			6	
LSLNIDPDAK	1	Unmodified	1084.5764	0.57643921	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.66	4	4	1				1	2		2	2	3	5	61.011	57.345	2	1.5708E-11	52096	160511_QHF_FH_JSI11i_1	152.97	104.41			1.9478	1.8729	54.725	10	3	Median	1.4037	1.1542	53.253	2	1	Median	0.81257	0.95469	NaN	1	0	Median	2.3484	2.2397	60.579	3	1	Median	2.3829	2.479	49.296	4	1	Median	6443500000	3025400000	3418100000	1506900000	656630000	850290000	1587700000	924280000	663400000	1831000000	820440000	1010600000	1517900000	624070000	893830000	34062	1057	32237	209722;209723;209724;209725;209726;209727;209728;209729;209730;209731;209732;209733	283152;283153;283154;283155;283156;283157;283158;283159;283160;283161;283162;283163;283164;283165;283166;283167;283168;283169;283170;283171	283154			20	
LSLNLDHK	1	Unmodified	938.51853	0.5185304	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		2	2						1	1	1	1	2	36.302	35.463	2;3	0.0026714	30827	160511_QHF_FH_JSI11i_3	76.679	32.33			0.81279	0.80331	11.272	3	0	Median	0.99475	0.82584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70648	0.7342	12.723	2	0	Median	169900000	92049000	77853000	25472000	14470000	11003000	0	0	0	0	0	0	144430000	77580000	66850000	34063	430	32238	209734;209735;209736;209737;209738	283172;283173;283174	283172			3	
LSLNLDHKSR	1	Acetyl (K)	1223.6622	0.66223452	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		50.978	41.258	3	0.00082405	22363	160513_QHF_FH_JSI11Kac_6	70.488	38.892			0.27189	0.26594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27189	0.26594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21041000	15573000	5468600	0	0	0	0	0	0	21041000	15573000	5468600	0	0	0	34064	430	32239	209739	283175	283175	216		1	
LSLPEDFYHFWK	1	Unmodified	1580.7664	0.76636524	5080	Q9NWY4	C4orf27	UPF0609 protein C4orf27	yes	yes	0	0	0	0				By MS/MS	9.5	6.5			1						1				2	99.973	99.99	3	0.0071484	43179	160513_QHF_FH_JSI12Kac_6	46.643	36.722			1.1607	1.1978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1607	1.1978	NaN	1	0	Median	14942000	8571400	6371100	0	0	0	0	0	0	0	0	0	14942000	8571400	6371100	34065	5080	32240	209740;209741	283176;283177	283177			1	
LSLPQNETVADTTLTK	1	Unmodified	1729.9098	0.90979459	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.757	63.132	2	2.7391E-10	57107	160511_QHF_FH_JSI10i_1	147.73	97.448			1.0542	0.95455	16.483	4	0	Median	1.1635	0.95646	NaN	1	0	Median	0.67591	0.79307	NaN	1	0	Median	0.98153	0.95264	NaN	1	0	Median	1.1322	1.1868	NaN	1	0	Median	367370000	193400000	173980000	110040000	53375000	56668000	96816000	61704000	35112000	81876000	37537000	44339000	78638000	40781000	37858000	34066	4848	32241	209742;209743;209744;209745	283178;283179;283180;283181;283182;283183;283184	283183			6	
LSLQDAVSQGVIDQDMATR	0	Unmodified	2046.0052	0.0051683175	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	83.58	83.169	2;3	4.6127E-185	75493	160511_QHF_FH_JSI10i_1	323.02	296.61			0.93016	0.9208	9.5422	7	3	Median	1.0719	0.87958	NaN	1	0	Median	0.76657	0.89425	13.957	2	1	Median	0.97257	0.9548	5.1265	2	1	Median	0.90373	0.93101	16.08	2	1	Median	685700000	379100000	306600000	70479000	33732000	36747000	229160000	143560000	85609000	212150000	103600000	108550000	173910000	98211000	75700000	34067	1085	32242	209746;209747;209748;209749;209750;209751;209752	283185;283186;283187;283188;283189;283190;283191;283192;283193;283194;283195;283196;283197	283193			13	
LSLQDAVSQGVIDQDMATR	0	Oxidation (M)	2062.0001	8.29396E-05	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		74.855	74.533	2	0.004098	67786	160511_QHF_FH_JSI11i_1	56.482	35.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34068	1085	32242	209753	283198	283198		732	1	
LSLQEQDAAIVK	1	Unmodified	1313.7191	0.7190807	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		53.565	52.77	2	0.0091806	47560	160511_QHF_FH_JSI10i_1	48.004	23.149			0.78365	0.70215	12.383	2	2	Median	0.78276	0.64328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78453	0.7664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109210000	62535000	46671000	54391000	31812000	22579000	0	0	0	54815000	30723000	24092000	0	0	0	34069	5720	32243	209754;209755;209756	283199;283200;283201	283200			3	
LSLSEGKVK	2	Acetyl (K)	1001.5757	0.57571092	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	49.929	39.577	2	0.032223	22827	160513_QHF_FH_JSI12Kac_4	57.859	6.7924			4.9576	5.371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.9576	5.371	NaN	1	1	Median	7675300	1373500	6301700	0	0	0	0	0	0	0	0	0	7675300	1373500	6301700	34070	2827	32244	209757	283202	283202			1	
LSLSNMHTAQLELTQANLQK	1	Unmodified	2239.1631	0.16306594	709	O95613	PCNT	Pericentrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			74.249	72.795	3	0.0059647	61073	160511_QHF_FH_JSI10i_3	37.552	29.264			0.94156	0.93315	8.1663	2	1	Median	1.1482	0.98862	NaN	1	1	Median	0.77211	0.88079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20356000	8608400	11748000	6030800	2375200	3655600	14325000	6233200	8092000	0	0	0	0	0	0	34071	709	32245	209758;209759	283203;283204	283203			2	
LSLTGHISTVR	0	Unmodified	1182.6721	0.67207093	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	45.436	39.807	3	0.021599	32490	160511_QHF_FH_JSI9i_3	28.361	17.531			1.034	0.95567	5.174	2	1	Median	1.1276	0.92134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94815	0.99128	NaN	1	1	Median	121610000	60659000	60948000	114530000	56724000	57810000	0	0	0	0	0	0	7072100	3934600	3137500	34072	350	32246	209760;209761	283205;283206	283205			2	
LSLTLHPDK	1	Unmodified	1022.576	0.57604528	4156	Q96KC8	DNAJC1	DnaJ homolog subfamily C member 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.762	40.762	3	0.0063463	35907	160511_QHF_FH_JSI11i_3	43.77	33.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34073	4156	32247	209762	283207	283207			1	
LSLTQDPVVK	1	Unmodified	1098.6285	0.62847478	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.735	50.059	2	0.0020062	45500	160511_QHF_FH_JSI12i_1	62.463	42.466			0.98934	0.91765	9.7181	4	0	Median	1.1217	0.91404	NaN	1	0	Median	0.79008	0.92128	NaN	1	0	Median	0.92489	0.91019	NaN	1	0	Median	1.0583	1.1112	NaN	1	0	Median	368620000	190480000	178140000	69572000	31889000	37683000	106000000	54124000	51878000	115220000	65220000	49996000	77827000	39249000	38578000	34074	723	32248	209763;209764;209765;209766	283208;283209;283210	283208			3	
LSLVDVSQVSVVHTLQTDFR	0	Unmodified	2242.1957	0.19574628	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.12	101.05	3	0.00025035	88829	160511_QHF_FH_JSI9i_2	53.359	44.076			1.7127	1.4668	NaN	1	0	Median	1.7127	1.4668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114150000	40352000	73802000	114150000	40352000	73802000	0	0	0	0	0	0	0	0	0	34075	3795	32249	209767	283211	283211			1	
LSLVFYQHK	1	Unmodified	1133.6233	0.62332982	3661	Q8NFU7	TET1	Methylcytosine dioxygenase TET1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	62.153	52.891	3	0.00058849	29035	160513_QHF_FH_JSI10Kac_6	76.827	0			1.1937	1.1351	29.601	4	0	Median	1.0769	0.93189	NaN	1	0	Median	0.65901	0.78488	NaN	1	0	Median	1.4091	1.3827	NaN	1	0	Median	1.3231	1.4308	NaN	1	0	Median	50966000	24797000	26169000	10689000	4672400	6017100	17715000	10574000	7141000	16234000	6640000	9594200	6327400	2910400	3417000	34076	3661	32250	209768;209769;209770;209771	283212;283213;283214;283215	283215			4	
LSLVPSSAR	0	Unmodified	928.53418	0.53418046	3655	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			42.43	40.91	2	0.056573	34053	160511_QHF_FH_JSI10i_3	34.387	10.618			1.1227	1.2846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1227	1.2846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60276000	26190000	34086000	0	0	0	60276000	26190000	34086000	0	0	0	0	0	0	34077	3655	32251	209772	283216	283216			1	
LSMFVLLPSHSK	1	Unmodified	1357.7428	0.74279303	4192	Q96P63	SERPINB12	Serpin B12	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	80.311	70.933	3	0.00583	38919	160513_QHF_FH_JSI11Kac_6	42.469	27.37			0.79208	0.83963	30.487	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68725	0.67681	NaN	1	0	Median	0.9129	1.0416	NaN	1	0	Median	9419900	5340100	4079800	0	0	0	0	0	0	6739500	3910000	2829500	2680400	1430100	1250200	34078	4192	32252	209773;209774	283217;283218	283217			2	
LSMINTMSK	1	Unmodified	1023.5093	0.50928762	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	42.801	42.212	2	0.0035285	35886	160511_QHF_FH_JSI12i_3	59.931	8.8646			1.0032	1.0266	7.4942	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81811	0.9345	NaN	1	0	Median	1.1548	1.0837	NaN	1	0	Median	1.0032	1.0266	NaN	1	0	Median	513900000	251110000	262780000	0	0	0	35523000	21897000	13625000	214930000	100090000	114840000	263440000	129120000	134320000	34079	4332	32253	209775;209776;209777	283219;283220;283221;283222;283223	283222			5	
LSMMIHPAAFTLEHIPK	1	Unmodified	1935.011	0.011045739	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.408	82.737	4	8.3091E-05	73086	160511_QHF_FH_JSI11i_3	66.335	56.586			0.97177	0.9624	25.982	4	0	Median	1.4933	1.2428	NaN	1	0	Median	0.56217	0.66177	NaN	1	0	Median	1.0247	0.97625	NaN	1	0	Median	0.92157	0.94875	NaN	1	0	Median	116870000	54554000	62312000	13218000	4240300	8977700	16805000	8200800	8603800	36741000	18097000	18643000	50103000	24016000	26087000	34080	620	32254	209778;209779;209780;209781	283224;283225;283226;283227	283224			3	
LSMMLLDSR	0	Unmodified	1064.5358	0.53583672	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.417	69.268	2	0.0042911	60100	160511_QHF_FH_JSI12i_3	57.032	39.936			1.1502	1.1076	5.4914	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1696	1.0654	NaN	1	0	Median	1.1311	1.1514	NaN	1	0	Median	66364000	32368000	33996000	0	0	0	0	0	0	32791000	15051000	17740000	33573000	17317000	16256000	34081	4749	32255	209782;209783	283228	283228			1	
LSMSQLNEK	1	Unmodified	1048.5223	0.52229515	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.23	1	4	4				2	1		2	4	4	2	40.24	36.811	2	0.00052543	31449	160511_QHF_FH_JSI11i_2	79.059	38.961			0.93448	0.96753	61.78	11	1	Median	0.67542	0.55924	23.01	2	1	Median	0.68533	0.82287	31.144	4	0	Median	1.8521	1.8007	79.618	3	0	Median	1.009	1.0747	2.4965	2	0	Median	2709600000	1349900000	1359700000	404350000	219810000	184540000	478890000	290500000	188390000	846470000	355740000	490730000	979900000	483880000	496030000	34082	2265	32256	209784;209785;209786;209787;209788;209789;209790;209791;209792;209793;209794;209795	283229;283230;283231;283232;283233;283234;283235;283236	283234			8	
LSMYGVDLHHAK	1	Unmodified	1369.6813	0.6812554	339;4719	O43491;Q9H4G0	EPB41L2;EPB41L1	Band 4.1-like protein 2;Band 4.1-like protein 1	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	40.454	40.349	3;4	2.5004E-05	35519	160511_QHF_FH_JSI11i_3	72.089	65.403			1.0814	1.0527	13.163	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0435	0.97118	0.74931	2	1	Median	1.1802	1.2018	8.0763	2	1	Median	431970000	193210000	238750000	0	0	0	0	0	0	154300000	76636000	77660000	277670000	116580000	161090000	34083	339;4719	32257	209796;209797;209798;209799	283237;283238;283239;283240;283241;283242	283238			6	
LSMYGVDLHK	1	Unmodified	1161.5852	0.58522975	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				52.142	51.097	3	0.015926	44819	160511_QHF_FH_JSI9i_2	33.761	27.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34084	988	32258	209800	283243	283243			1	
LSNGKYPK	2	Acetyl (K)	947.50763	0.50763136	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	24.074	15.738	2	0.013889	9989	160513_QHF_FH_JSI10Kac_4	69.198	37.262			0.96743	0.9604	14.508	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0284	1.2273	NaN	1	0	Median	0.96743	0.9604	NaN	1	0	Median	0.86309	0.9492	NaN	1	0	Median	71942000	37281000	34661000	0	0	0	20406000	9398700	11007000	28196000	14954000	13243000	23340000	12929000	10411000	34085	3164	32259	209801;209802;209803	283244;283245;283246	283244	2784		3	
LSNHISSLFR	0	Unmodified	1172.6302	0.63020611	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.1	6.29			3						5	4	4			52.162	46.404	2;3	0.00082281	25491	160513_QHF_FH_JSI10Kac_6	78.098	40.539			0.85458	0.97956	20.262	7	2	Median	1.1887	0.98081	27.899	4	2	Median	0.80101	0.92789	6.9617	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	612940000	331650000	281300000	281320000	128490000	152830000	331620000	203160000	128470000	0	0	0	0	0	0	34086	1000	32260	209804;209805;209806;209807;209808;209809;209810;209811	283247;283248;283249;283250;283251;283252;283253;283254;283255	283255			9	
LSNIFVIGK	1	Unmodified	989.59097	0.59096706	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.04	6.23	3	4	4			3	4	4	3	6	6	6	7	68.213	62.03	2	3.5315E-05	56829	160511_QHF_FH_JSI10i_3	100.02	74.19			1.094	1.0598	25.991	25	0	Median	1.2487	1.0164	40.717	6	0	Median	0.88517	1.0394	10.661	6	0	Median	1.1172	1.0815	30.963	6	0	Median	1.094	1.1846	17.128	7	0	Median	24870000000	11870000000	13000000000	4617700000	1850100000	2767600000	4567600000	2282700000	2284900000	8610800000	4358400000	4252400000	7073800000	3378400000	3695400000	34087	2013	32261	209812;209813;209814;209815;209816;209817;209818;209819;209820;209821;209822;209823;209824;209825;209826;209827;209828;209829;209830;209831;209832;209833;209834;209835;209836	283256;283257;283258;283259;283260;283261;283262;283263;283264;283265;283266;283267;283268;283269;283270;283271;283272;283273;283274;283275;283276;283277;283278;283279;283280;283281;283282;283283;283284;283285;283286;283287;283288;283289;283290;283291;283292	283262			37	
LSNIFVIGKGNK	2	Acetyl (K)	1330.7609	0.76088593	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		78.077	68.113	2	2.13E-15	37202	160513_QHF_FH_JSI11Kac_6	138.25	93.94			0.27969	0.274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27969	0.274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44979000	37542000	7436400	0	0	0	0	0	0	44979000	37542000	7436400	0	0	0	34088	2013	32262	209837;209838	283293;283294	283293	2040;2044		2	
LSNKVEAIDVEEAK	2	Unmodified	1543.8094	0.80935227	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	38.553	38.162	2;3	8.6755E-07	33491	160511_QHF_FH_JSI11i_3	110.38	89.527			1.0492	1.1001	42.062	8	4	Median	1.3814	1.179	NaN	1	0	Median	0.95666	1.2005	NaN	1	0	Median	1.0883	1.0265	43.515	3	2	Median	1.0116	0.99742	63.268	3	2	Median	998040000	542440000	455600000	76654000	27580000	49073000	117150000	70796000	46351000	360780000	203970000	156810000	443460000	240090000	203370000	34089	1409	32263	209839;209840;209841;209842;209843;209844;209845;209846;209847;209848	283295;283296;283297;283298;283299;283300;283301;283302;283303;283304;283305;283306	283296			12	
LSNLALVKPEK	2	Unmodified	1210.7285	0.72852317	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.1		5	12						2	5	6	5	3	43.003	40.466	2;3	0.0012739	35336	160511_QHF_FH_JSI10i_2	58.674	52.015			0.57761	0.59172	29.58	10	8	Median	0.98257	0.81055	28.347	2	1	Median	0.58421	0.67563	26.354	3	3	Median	0.48613	0.47505	18.606	3	2	Plateau	0.58008	0.59172	0.86697	2	2	Median	6885500000	3814000000	3071500000	481870000	144550000	337320000	1434700000	770090000	664560000	462790000	275060000	187730000	4506200000	2624300000	1881900000	34090	196	32264	209849;209850;209851;209852;209853;209854;209855;209856;209857;209858;209859;209860;209861;209862;209863;209864;209865;209866;209867	283307;283308;283309;283310;283311;283312;283313;283314;283315;283316;283317;283318;283319;283320;283321;283322;283323;283324;283325;283326;283327;283328	283324			21	
LSNLALVKPEK	2	Acetyl (K)	1252.7391	0.73908786	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	69.045	58.219	2;3	0.01347	31401	160513_QHF_FH_JSI10Kac_4	55.452	44.288			0.38759	0.40626	151.39	4	2	Linear	NaN	NaN	NaN	0	0	Median	2.45	2.7483	202.19	2	1	Median	0.89959	0.88354	122.46	2	1	Median	NaN	NaN	NaN	0	0	Median	16074000	9597800	6476400	0	0	0	7121100	4272400	2848700	8953100	5325300	3627700	0	0	0	34091	196	32264	209868;209869;209870;209871;209872	283329;283330;283331;283332	283329	107		4	
LSNLPGWSLK	1	Unmodified	1113.6182	0.61824444	5025	Q9NV88	INTS9	Integrator complex subunit 9	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			68.394	66.913	2	0.025651	56047	160511_QHF_FH_JSI10i_3	42.19	9.4399			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34092	5025	32265	209873	283333	283333			1	
LSNLYKSAADDSEAK	2	Acetyl (K)	1652.7893	0.78934511	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						3					1	2		51.615	42.156	2;3	0.0090678	22267	160513_QHF_FH_JSI10Kac_3	64.55	48.661			0.39909	0.38955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39909	0.38955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5780500	4933800	846760	0	0	0	921870	921870	0	4858600	4011900	846760	0	0	0	34093	1016	32266	209874;209875;209876	283334;283335;283336;283337	283337	824		4	
LSNNAQNWGMQR	0	Unmodified	1417.6521	0.65208054	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			33.736	32.561	2	0.0073158	28527	160511_QHF_FH_JSI10i_2	51.268	40.116			0.98831	1.1754	6.9177	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98831	1.1754	6.9177	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56010000	27689000	28320000	0	0	0	56010000	27689000	28320000	0	0	0	0	0	0	34094	315	32267	209877;209878	283338;283339;283340	283340			3	
LSNRPAFMPSEGK	1	Unmodified	1432.7133	0.71328381	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		34.733	33.778	3	0.011455	29382	160511_QHF_FH_JSI11i_3	41.014	0			0.51497	0.4278	44.666	3	0	Plateau	0.51497	0.4278	NaN	1	0	Median	0.51384	0.59412	NaN	1	0	Median	1.1333	1.0352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216410000	129120000	87296000	104750000	71233000	33515000	58540000	38671000	19870000	53124000	19213000	33912000	0	0	0	34095	361	32268	209879;209880;209881	283341;283342;283343;283344	283341			4	
LSNSDSQDIQGR	0	Unmodified	1318.6113	0.61132116	172	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	13.721	13.489	2	6.4987E-05	11173	160511_QHF_FH_JSI10i_1	96.229	72.199			0.95024	0.97727	26.649	4	3	Median	NaN	NaN	NaN	0	0	Median	0.95268	1.1042	NaN	1	0	Median	0.77061	0.7495	28.974	2	2	Median	1.0167	1.0382	NaN	1	1	Median	334780000	186600000	148180000	0	0	0	98246000	46481000	51765000	168620000	101840000	66783000	67917000	38285000	29631000	34096	172	32269	209882;209883;209884;209885	283345;283346;283347;283348;283349	283349			5	
LSNSSSSVSPLILSSNLPVNNK	1	Unmodified	2256.1961	0.19614021	4468	Q9BVC5	C2orf49	Ashwin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.256	79.63	3	0.00062973	70056	160511_QHF_FH_JSI11i_2	48.315	35.638			0.80083	0.81747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80083	0.81747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20471000	13781000	6689700	0	0	0	0	0	0	20471000	13781000	6689700	0	0	0	34097	4468	32270	209886	283350	283350			1	
LSNTLSLDIHENHSFALLGK	1	Unmodified	2208.1539	0.15388147	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.792	77.525	3	0.013839	67314	160511_QHF_FH_JSI12i_3	34.148	25.325			0.52839	0.54237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52839	0.54237	NaN	1	1	Median	15320000	11770000	3550300	0	0	0	0	0	0	0	0	0	15320000	11770000	3550300	34098	1316	32271	209887	283351	283351			1	
LSNTQGVVSAFSTMMSVHR	0	Unmodified	2050.9928	0.99282949	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	3	1	1	83.923	78.692	3	1.596E-18	41959	160513_QHF_FH_JSI10Kac_6	139.02	127.11			0.9778	0.92196	21.74	7	2	Median	1.1731	0.97601	21.477	2	0	Median	0.77522	0.91457	34.281	3	1	Median	0.9778	0.94065	NaN	1	0	Median	0.851	0.92196	NaN	1	1	Median	1890800000	917240000	973540000	675920000	282070000	393840000	883340000	473330000	410010000	272700000	134370000	138340000	58822000	27465000	31357000	34099	1612	32272	209888;209889;209890;209891;209892;209893;209894	283352;283353;283354;283355;283356;283357;283358;283359;283360;283361;283362;283363	283362			12	
LSNTQGVVSAFSTMMSVHR	0	Oxidation (M)	2066.9877	0.98774411	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	73.137	64.659	3	5.8161E-08	35162	160513_QHF_FH_JSI11Kac_6	100.28	91.923			0.92006	0.94783	4.2208	5	2	Median	1.1039	0.94783	NaN	1	0	Median	0.81811	0.96662	3.4358	2	1	Median	0.94588	0.91467	NaN	1	0	Median	0.92006	1.0174	NaN	1	1	Median	278600000	149740000	128860000	53465000	26515000	26951000	180300000	102740000	77557000	30868000	14866000	16002000	13968000	5618000	8349600	34100	1612	32272	209895;209896;209897;209898;209899	283364;283365;283366;283367;283368;283369	283365		1287;1288	5	
LSNTQGVVSAFSTMMSVHR	0	2 Oxidation (M)	2082.9827	0.98265874	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		58.983	49.722	3	1.2552E-07	27303	160513_QHF_FH_JSI10Kac_6	91.725	88.005			0.93579	0.91898	10.821	4	2	Median	1.167	1.0134	NaN	1	0	Median	0.67896	0.80389	NaN	1	0	Median	0.93579	0.91898	8.9329	2	2	Median	NaN	NaN	NaN	0	0	Median	182010000	90632000	91378000	83760000	36341000	47419000	71796000	41605000	30191000	26455000	12686000	13768000	0	0	0	34101	1612	32272	209900;209901;209902;209903	283370;283371;283372;283373	283373		1287;1288	4	
LSNTSPEFQEMSLLER	0	Unmodified	1879.8986	0.89857798	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.739	76.905	2	6.7841E-05	66384	160511_QHF_FH_JSI12i_2	90.731	72.106			1.032	1.1048	8.6295	4	1	Median	1.2708	1.1148	NaN	1	1	Median	1.0074	1.293	NaN	1	0	Median	1.0572	1.0672	NaN	1	0	Median	0.97206	1.095	NaN	1	0	Median	84385000	39753000	44631000	18100000	5528800	12571000	13030000	7697300	5333200	23785000	11756000	12028000	29470000	14771000	14699000	34102	4991	32273	209904;209905;209906;209907	283374;283375;283376;283377;283378;283379	283375			6	
LSNVNLQEK	1	Unmodified	1043.5611	0.56112349	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.781	25.243	2	0.017264	22410	160511_QHF_FH_JSI12i_1	52.725	30.765			0.62771	0.65164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62771	0.65164	NaN	1	1	Median	168610000	109760000	58851000	0	0	0	0	0	0	0	0	0	168610000	109760000	58851000	34103	5603	32274	209908	283380	283380			1	
LSPADDELYQR	0	Unmodified	1305.6201	0.62009493	4433	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		41.603	41.259	2	0.025749	37307	160511_QHF_FH_JSI11i_1	40.715	29.885			1.408	1.3619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.408	1.3619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80480000	36708000	43771000	0	0	0	0	0	0	80480000	36708000	43771000	0	0	0	34104	4433	32275	209909	283381	283381			1	
LSPANQR	0	Unmodified	784.41915	0.4191507	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.02		3	2				3	4		2	3	4	3	7.8348	2.4985	2	0.004412	3055	160513_QHF_FH_JSI9Kac_5	97.596	62.491			1.0077	1.0746	8.407	12	0	Median	1.3827	1.1685	2.9085	2	0	Median	0.98663	1.2074	9.3786	3	0	Plateau	1.0771	1.053	8.6594	4	0	Median	0.99086	0.99966	10.132	3	0	Median	3305500000	1709700000	1595800000	558100000	248560000	309540000	601340000	345060000	256280000	1347200000	668250000	678950000	798820000	447800000	351010000	34105	2380	32276	209910;209911;209912;209913;209914;209915;209916;209917;209918;209919;209920;209921	283382;283383;283384;283385;283386;283387;283388;283389;283390;283391;283392;283393	283384			12	
LSPATENK	1	Unmodified	858.4447	0.44469675	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	1	2	3	10.237	7.8803	2	0.0040696	6804	160511_QHF_FH_JSI10i_1	69.825	29.722			0.94875	0.98503	76.49	7	2	Median	1.2089	0.98503	NaN	1	0	Median	0.65585	0.77118	NaN	1	0	Median	1.0026	0.97524	11.602	2	0	Median	0.94875	1.0089	112.81	3	2	Median	1339700000	699300000	640380000	277700000	133310000	144400000	302190000	175160000	127030000	369250000	199150000	170100000	390530000	191680000	198850000	34106	3503	32277	209922;209923;209924;209925;209926;209927;209928	283394;283395;283396;283397;283398;283399;283400;283401;283402	283399			9	
LSPAWLELLPHGR	0	Unmodified	1487.8249	0.82488317	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	3	1		94.103	93.388	3	0.00027547	82718	160511_QHF_FH_JSI11i_3	65.043	54.971			0.70623	0.74019	27.777	4	2	Median	1.1407	0.97524	NaN	1	0	Median	0.49528	0.58888	22.005	2	2	Median	0.84169	0.79632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63210000	37408000	25803000	8053700	3976900	4076700	19151000	12276000	6875400	36005000	21155000	14851000	0	0	0	34107	5637	32278	209929;209930;209931;209932;209933	283403;283404;283405;283406;283407;283408	283403			6	
LSPDAFIQMALQLAYYR	0	Unmodified	1999.0237	0.023718915	1555	P43155	CRAT	Carnitine O-acetyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									4	2	1	1		101.28	92.905	2;3	3.1457E-08	53287	160513_QHF_FH_JSI9Kac_6	116.43	92.983			1.2664	1.4373	6.4778	4	1	Linear	1.6543	1.4217	0.2133	2	1	Median	1.2181	1.4509	NaN	1	0	Median	1.6962	1.627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	208280000	74765000	133510000	103730000	32125000	71602000	77192000	33249000	43943000	27361000	9391400	17970000	0	0	0	34108	1555	32279	209934;209935;209936;209937	283409;283410;283411;283412	283410			4	
LSPDAIPGK	1	Unmodified	896.49673	0.49673232	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.08	4	3	1			2	3	1		2	5	3	4	38.251	33.569	2	0.00034516	30089	160511_QHF_FH_JSI11i_1	82.452	62.816			0.84372	0.96695	39.082	14	1	Median	1.6073	1.3454	23.743	2	0	Median	0.79763	0.94814	58.235	5	1	Median	1.0211	0.98613	12.441	3	0	Median	0.70795	0.78163	19.261	4	0	Median	9563900000	4521600000	5042200000	2208500000	872980000	1335500000	2751600000	1418600000	1333000000	2609800000	1189200000	1420500000	1994100000	1040800000	953210000	34109	1650	32280	209938;209939;209940;209941;209942;209943;209944;209945;209946;209947;209948;209949;209950;209951	283413;283414;283415;283416;283417;283418;283419;283420;283421;283422;283423;283424;283425;283426;283427;283428;283429;283430;283431;283432	283414			20	
LSPDAVAQLAFQMAFLR	0	Unmodified	1876.9869	0.98693948	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	99.692	90.354	3	7.5412E-05	51850	160513_QHF_FH_JSI11Kac_6	75.445	64.96			1.0185	0.97374	11.296	3	0	Plateau	0.938	0.80271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0394	0.97854	NaN	1	0	Median	0.91396	0.97374	NaN	1	0	Median	279570000	142500000	137070000	88965000	49886000	39079000	0	0	0	150320000	70610000	79706000	40292000	22009000	18283000	34110	1240	32281	209952;209953;209954	283433;283434	283433			1	
LSPDGHFGSK	1	Unmodified	1043.5036	0.50360861	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	4	3	19.94	19.554	2;3	0.00022046	16371	160511_QHF_FH_JSI11i_3	60.49	53.594			0.94531	0.94159	14.401	9	1	Median	1.4778	1.2309	NaN	1	0	Median	0.68449	0.83334	NaN	1	1	Median	0.88488	0.83222	6.6278	4	0	Median	0.97415	1.0081	4.9943	3	0	Plateau	1167700000	565680000	602000000	68436000	26828000	41608000	35896000	24910000	10986000	416870000	225110000	191760000	646480000	288840000	357640000	34111	3686	32282	209955;209956;209957;209958;209959;209960;209961;209962;209963	283435;283436;283437;283438;283439;283440;283441;283442;283443;283444	283435			10	
LSPEAERVLR	0	Unmodified	1168.6564	0.65642086	5000	Q9NUG6	PDRG1	p53 and DNA damage-regulated protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		34.698	33.971	3	0.012501	29644	160511_QHF_FH_JSI9i_2	33.866	18.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34112	5000	32283	209964;209965	283445;283446	283445			2	
LSPEDYTLK	1	Unmodified	1064.539	0.53899107	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.326	48.646	2	0.011918	43943	160511_QHF_FH_JSI11i_1	57.859	38.072			1.546	1.5647	35.209	4	4	Median	1.3584	1.0947	NaN	1	1	Median	2.141	2.5776	NaN	1	1	Median	1.604	1.5493	NaN	1	1	Median	1.4901	1.5802	NaN	1	1	Median	1048200000	413270000	634960000	237690000	112940000	124750000	268570000	94827000	173750000	334040000	129240000	204810000	207920000	76272000	131650000	34113	869	32284	209966;209967;209968;209969	283447;283448;283449;283450	283447			4	
LSPEELAELK	1	Unmodified	1127.6074	0.60740498	3476	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.602	67.303	2	0.01013	57890	160511_QHF_FH_JSI12i_2	48.091	32.831			0.87475	0.95419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87475	0.95419	NaN	1	0	Median	27143000	14436000	12707000	0	0	0	0	0	0	0	0	0	27143000	14436000	12707000	34114	3476	32285	209970	283451	283451			1	
LSPEELLLR	0	Unmodified	1068.6179	0.61791009	1039;2551	P13797;P13796;Q14651	PLS3;LCP1;PLS1	Plastin-3;Plastin-2;Plastin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.47	3	4						4		2	3	3	3	80.509	76.324	2	6.8665E-05	69871	160511_QHF_FH_JSI10i_2	96.492	62.941			0.96369	1.0347	8.8483	11	0	Median	1.1616	0.99379	5.7017	2	0	Median	0.84996	1.05	4.8272	3	0	Median	1.0359	1.0701	12.847	3	0	Plateau	0.96369	1.0678	7.4163	3	0	Median	2840000000	1476500000	1363500000	520020000	254780000	265240000	593080000	324490000	268580000	1051400000	538120000	513320000	675480000	359130000	316360000	34115	1039;2551	32286	209971;209972;209973;209974;209975;209976;209977;209978;209979;209980;209981	283452;283453;283454;283455;283456;283457;283458;283459;283460;283461;283462;283463;283464;283465;283466;283467;283468;283469	283467			18	
LSPEEVQK	1	Unmodified	928.48656	0.48656157	5589	Q9Y3D7	PAM16	Mitochondrial import inner membrane translocase subunit TIM16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.393	20.872	2	0.0032287	18228	160511_QHF_FH_JSI12i_1	74.127	41.287			1.0377	1.0656	31.023	4	1	Median	2.3095	1.8861	NaN	1	1	Median	0.83826	0.97029	NaN	1	0	Median	1.165	1.1471	NaN	1	0	Median	0.92436	0.98987	NaN	1	0	Median	850500000	400980000	449530000	137170000	61174000	75995000	205790000	109010000	96788000	239960000	105420000	134540000	267580000	125370000	142210000	34116	5589	32287	209982;209983;209984;209985	283470;283471;283472;283473;283474;283475;283476	283473			7	
LSPELLNTGRFETK	1	Unmodified	1603.857	0.85697116	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	3	2	1	59.051	58.232	2;3	0.00018965	50065	160511_QHF_FH_JSI12i_3	72.417	54.005			0.95434	1.1203	18.797	7	0	Median	1.4937	1.2114	NaN	1	0	Median	0.95434	1.1203	19.518	3	0	Median	1.0753	1.0304	22.54	2	0	Median	0.799	0.80558	NaN	1	0	Median	790920000	387100000	403820000	86394000	31679000	54715000	261770000	133820000	127950000	335550000	159150000	176400000	107200000	62450000	44754000	34117	1785	32288	209986;209987;209988;209989;209990;209991;209992	283477;283478;283479;283480;283481;283482;283483;283484;283485;283486	283485			10	
LSPEPWTPETGLVTDAFK	1	Unmodified	1986.9939	0.99385857	707;418	O95573;O60488	ACSL3;ACSL4	Long-chain-fatty-acid--CoA ligase 3;Long-chain-fatty-acid--CoA ligase 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								2	4	5	5	97.217	97.023	2;3	4.5335E-11	88080	160511_QHF_FH_JSI11i_1	141.54	126.97			1.0746	1.073	13.088	15	6	Median	1.0649	0.94448	9.2106	2	0	Median	0.79255	0.99018	4.5486	4	1	Median	1.0746	1.092	8.933	5	3	Median	1.1765	1.2883	4.319	4	2	Median	1027700000	495410000	532290000	93796000	41129000	52667000	256970000	140690000	116290000	398130000	191230000	206900000	278810000	122360000	156440000	34118	707;418	32289	209993;209994;209995;209996;209997;209998;209999;210000;210001;210002;210003;210004;210005;210006;210007;210008	283487;283488;283489;283490;283491;283492;283493;283494;283495;283496;283497;283498;283499;283500;283501;283502;283503;283504;283505;283506;283507;283508;283509	283487			23	
LSPESAEEYIEYLK	1	Unmodified	1669.8087	0.80868357	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.244	91.757	2	0.00067649	80686	160511_QHF_FH_JSI11i_2	89.403	65.022			4.3767	4.3231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3767	4.3231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65571000	15225000	50346000	0	0	0	0	0	0	65571000	15225000	50346000	0	0	0	34119	4863	32290	210009	283510	283510			1	
LSPETQSAIEQEIR	0	Unmodified	1599.8104	0.8104149	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	54.051	53.366	2	0.0016744	48143	160511_QHF_FH_JSI10i_1	61.235	44.322			0.73126	0.71555	34.866	5	3	Median	0.58828	0.51431	NaN	1	1	Median	0.54679	0.66044	47.545	2	1	Median	0.73126	0.71555	NaN	1	0	Median	1.0089	1.0416	NaN	1	1	Median	339900000	202870000	137030000	57615000	40478000	17137000	132930000	83306000	49629000	84667000	49084000	35583000	64681000	30003000	34678000	34120	4261	32291	210010;210011;210012;210013;210014;210015	283511;283512;283513;283514;283515;283516;283517;283518;283519	283515			9	
LSPFMADIR	0	Unmodified	1048.5376	0.53755128	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							2	2	1	1	64.629	63.694	2	0.0031551	56017	160511_QHF_FH_JSI9i_2	61.679	44.715			1.1527	1.2123	6.0004	6	0	Median	1.5951	1.3055	4.4245	2	0	Median	0.9856	1.1737	1.1222	2	0	Median	1.0992	1.1503	NaN	1	0	Median	1.2088	1.2424	NaN	1	0	Median	2883200000	1471600000	1411600000	715730000	309400000	406330000	747790000	457380000	290410000	1136900000	578430000	558430000	282820000	126400000	156420000	34121	1192	32292	210016;210017;210018;210019;210020;210021	283520;283521;283522;283523;283524;283525;283526	283523			7	
LSPFMADIRDAPQDFHPDR	0	Oxidation (M)	2243.043	0.042950807	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			65.909	64.412	4	0.011443	53889	160511_QHF_FH_JSI10i_3	37.09	29.097			0.71507	0.83562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71507	0.83562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27700000	16491000	11209000	0	0	0	27700000	16491000	11209000	0	0	0	0	0	0	34122	1192	32293	210022	283527	283527		818	1	
LSPFMADIRDAPQDFHPDR	0	Unmodified	2227.048	0.048036185	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							3	3			74.131	72.677	4	0.0052413	59623	160511_QHF_FH_JSI9i_3	35.436	21.564			1.235	1.1953	18.205	6	3	Median	1.7659	1.4251	10.47	3	1	Median	0.97205	1.1422	11.823	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	317220000	134800000	182410000	177810000	60683000	117130000	139400000	74118000	65283000	0	0	0	0	0	0	34123	1192	32293	210023;210024;210025;210026;210027;210028	283528;283529;283530;283531;283532	283531			4	
LSPGESAYQK	1	Unmodified	1078.5295	0.52948901	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.466	18.962	2	0.0019108	16439	160511_QHF_FH_JSI12i_1	75.378	43.444			0.73079	0.57975	27.747	4	4	Linear	0.71976	0.59383	NaN	1	1	Median	0.56262	0.67552	NaN	1	1	Median	0.74199	0.73095	NaN	1	1	Median	1.0668	1.1263	NaN	1	1	Median	375100000	226430000	148680000	93767000	48849000	44918000	125480000	87067000	38414000	94372000	56161000	38211000	61485000	34351000	27133000	34124	3083	32294	210029;210030;210031;210032	283533;283534;283535;283536	283534			4	
LSPGGYFIGTTPNSFELIR	0	Unmodified	2068.0629	0.062941193	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	1	2	3	100.47	100.4	2;3	2.0028E-10	86954	160511_QHF_FH_JSI12i_3	128.9	106.18			0.88168	0.88706	46.243	8	5	Median	0.54705	0.46202	36.629	2	1	Median	0.64263	0.7372	NaN	1	0	Median	1.0023	0.95185	30.614	2	1	Median	1.0756	1.1156	22.255	3	3	Median	257710000	135010000	122700000	50901000	33737000	17164000	32213000	20277000	11936000	54325000	26017000	28308000	120270000	54982000	65288000	34125	301	32295	210033;210034;210035;210036;210037;210038;210039;210040	283537;283538;283539;283540;283541;283542;283543;283544;283545;283546	283545			10	
LSPIENFLPLHYDYLQFAYYR	0	Unmodified	2661.3268	0.32676045	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	96.542	87.288	3	2.0215E-73	49759	160513_QHF_FH_JSI9Kac_6	205.02	174.81			1.1132	1.0544	0.91437	2	0	Median	1.2176	1.0476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0178	1.0612	NaN	1	0	Median	1309300000	619660000	689600000	563640000	248640000	315000000	0	0	0	0	0	0	745620000	371030000	374600000	34126	3407	32296	210041;210042	283547;283548	283547			2	
LSPIPAVPASVPLQAWHPAK	1	Unmodified	2078.1677	0.16768104	2254	Q07617	SPAG1	Sperm-associated antigen 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.614	89.614	3	0.00014059	79946	160511_QHF_FH_JSI11i_3	61.648	51.899			0.71083	0.67077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71083	0.67077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43069000	26867000	16202000	0	0	0	0	0	0	43069000	26867000	16202000	0	0	0	34127	2254	32297	210043	283549	283549			1	
LSPISHGNTIALFFR	0	Unmodified	1671.9097	0.90967544	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	81.53	73.814	2;3	2.8162E-24	40220	160513_QHF_FH_JSI11Kac_6	153.24	135.49			0.93559	1.0324	12.942	5	2	Median	1.2157	1.0606	NaN	1	0	Median	0.89711	1.0725	5.3866	2	2	Median	0.957	0.93232	NaN	1	0	Median	0.75089	0.80413	NaN	1	0	Median	675850000	338240000	337610000	300820000	141390000	159430000	191620000	96688000	94928000	96280000	51466000	44814000	87132000	48695000	38438000	34128	4352	32298	210044;210045;210046;210047;210048;210049	283550;283551;283552;283553;283554;283555;283556;283557	283550			8	
LSPLFGIYYSVEK	1	Unmodified	1514.8021	0.80208205	3956	Q969Z3	MARC2	Mitochondrial amidoxime reducing component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		2	2						4	2	1	3	2	92.831	89.392	2	8.5883E-08	45922	160513_QHF_FH_JSI10Kac_6	107.18	72.455			0.82437	0.71819	58.862	7	2	Median	0.51787	0.4518	65.548	2	1	Median	0.86275	1.0233	NaN	1	0	Median	0.60235	0.58603	67.227	3	1	Median	1.0726	1.0828	NaN	1	0	Median	710600000	488200000	222390000	319650000	254040000	65603000	89553000	48381000	41172000	246170000	162670000	83502000	55229000	23112000	32116000	34129	3956	32299	210050;210051;210052;210053;210054;210055;210056;210057	283558;283559;283560;283561;283562;283563;283564;283565;283566;283567;283568;283569	283569			11	
LSPNAWK	1	Unmodified	814.43374	0.43373813	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.744	30.744	2	0.031087	26572	160511_QHF_FH_JSI11i_3	51.787	37.374			31.686	29.774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31.686	29.774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142660000	5476800	137190000	0	0	0	0	0	0	142660000	5476800	137190000	0	0	0	34130	2754	32300	210058	283570	283570			1	
LSPPSSSAASSYSFSDLNSTR	0	Unmodified	2159.9971	0.99710605	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		63.91	63.29	3	0.020159	57470	160511_QHF_FH_JSI11i_1	22.763	13.357			1.2409	1.3697	43.428	3	1	Plateau	1.2058	0.99092	NaN	1	0	Median	1.5987	1.8932	NaN	1	0	Median	2.3861	2.2615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	199000000	65266000	133730000	70790000	22713000	48078000	62405000	24284000	38120000	65803000	18269000	47534000	0	0	0	34131	1703	32301	210059;210060;210061	283571;283572	283571			2	
LSPPSSSAASSYSFSDLNSTRGDADMYDLPK	1	Unmodified	3265.4721	0.47211665	1703	P50402	EMD	Emerin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.17	0.898	2	1	3							1	1	3	1	78.54	78.294	3;4	1.2542E-12	69982	160511_QHF_FH_JSI11i_3	76.611	74.247			0.98468	0.89312	11.093	6	2	Median	0.97583	0.85736	NaN	1	0	Median	0.72434	0.8434	NaN	1	0	Median	0.9936	0.97598	3.6325	3	2	Plateau	0.73345	0.74119	NaN	1	0	Median	313200000	152740000	160460000	48610000	22807000	25804000	50656000	31270000	19386000	158150000	68271000	89875000	55786000	30392000	25394000	34132	1703	32302	210062;210063;210064;210065;210066;210067	283573;283574;283575;283576;283577;283578	283574			6	
LSPPYSSPQEFAQDVGR	0	Unmodified	1876.8955	0.89554151	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	69.935	69.271	2;3	1.6852E-30	63108	160511_QHF_FH_JSI11i_1	192.15	170.4			0.98232	1.0317	7.0211	12	0	Median	1.3307	1.0903	11.422	3	0	Median	0.93412	1.1166	4.6148	3	0	Median	1.0287	1.0016	2.3731	3	0	Plateau	0.9715	1.0132	1.1357	3	0	Plateau	3168400000	1523800000	1644600000	626880000	268910000	357970000	1021400000	505340000	516030000	807050000	391750000	415300000	713140000	357790000	355350000	34133	2380	32303	210068;210069;210070;210071;210072;210073;210074;210075;210076;210077;210078;210079	283579;283580;283581;283582;283583;283584;283585;283586;283587;283588;283589;283590;283591;283592;283593;283594;283595;283596;283597;283598;283599;283600;283601;283602;283603;283604;283605;283606;283607;283608;283609;283610;283611;283612;283613;283614;283615	283581			37	
LSPQAVNSIAK	1	Unmodified	1126.6346	0.63462279	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	40.389	39.658	2	0.00011018	34833	160511_QHF_FH_JSI10i_2	101.38	42.566			0.97351	1.0794	27.773	9	1	Median	0.74836	0.62843	10.822	2	1	Median	0.97284	1.1595	2.1609	2	0	Median	1.0089	1.0052	8.3729	2	0	Median	1.1136	1.279	9.5596	3	0	Plateau	2344200000	1166600000	1177700000	318660000	174990000	143680000	551440000	278620000	272820000	720100000	354710000	365390000	754010000	358240000	395770000	34134	1361	32304	210080;210081;210082;210083;210084;210085;210086;210087;210088	283616;283617;283618;283619;283620;283621;283622;283623;283624;283625;283626;283627;283628;283629	283627			14	
LSPQFPNEEDSFHK	1	Unmodified	1673.7686	0.76855009	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		50.795	49.953	3	0.0034823	44095	160511_QHF_FH_JSI10i_2	43.592	35.812			0.94751	0.97579	7.9543	3	0	Plateau	1.2991	1.1282	NaN	1	0	Median	0.85397	1.0372	NaN	1	0	Median	0.94751	0.96234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	328410000	162780000	165640000	77964000	35260000	42705000	115730000	73181000	42547000	134720000	54335000	80387000	0	0	0	34135	1682	32305	210089;210090;210091	283630;283631	283631			1	
LSPSAASDAVLSALLSIFSR	0	Unmodified	2004.0892	0.089155943	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.19	97.471	2;3	6.1277E-45	57675	160513_QHF_FH_JSI10Kac_6	170.89	149.05			0.85985	1.0127	19.498	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85985	1.0127	19.498	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283400000	150280000	133120000	0	0	0	283400000	150280000	133120000	0	0	0	0	0	0	34136	3508	32306	210092;210093	283632;283633;283634	283632			3	
LSPSPSSR	0	Unmodified	829.42938	0.42938104	1180;2207	Q03252;P20700	LMNB2;LMNB1	Lamin-B2;Lamin-B1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	5.64			3				1	1		1	2	1	1	10.964	6.9283	2	0.0040128	7148	160511_QHF_FH_JSI11i_3	69.998	32.353			1.0781	1.0578	17.861	5	0	Median	1.2514	1.0578	NaN	1	0	Median	0.81776	0.97672	32.326	2	0	Median	1.0781	1.0103	NaN	1	0	Median	1.1365	1.1714	NaN	1	0	Median	954510000	430590000	523930000	16711000	7377600	9333000	97536000	48743000	48792000	399350000	177100000	222250000	440920000	197370000	243550000	34137	2207;1180	32307	210094;210095;210096;210097;210098	283635;283636;283637;283638;283639;283640;283641	283636			7	
LSPSPTSQR	0	Unmodified	971.50361	0.50360861	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	5.98	4	4	3				4	2		4	5	4	4	13.562	10.223	2	9.5741E-05	9258	160511_QHF_FH_JSI10i_2	94.114	33.355			0.883	0.9214	14.822	17	4	Median	1.095	0.90581	22.31	4	0	Median	0.77222	0.90568	16.208	5	0	Median	0.91359	0.91573	9.0822	4	2	Median	0.87617	0.95717	7.7477	4	2	Median	6487200000	3441100000	3046200000	1308700000	668100000	640580000	1705100000	1008300000	696740000	1561300000	812610000	748740000	1912100000	952000000	960140000	34138	791	32308	210099;210100;210101;210102;210103;210104;210105;210106;210107;210108;210109;210110;210111;210112;210113;210114;210115	283642;283643;283644;283645;283646;283647;283648;283649;283650;283651;283652;283653;283654;283655;283656;283657;283658;283659;283660;283661;283662;283663;283664	283663			23	
LSPSTSGPHSHDYLPQER	0	Unmodified	2006.9446	0.94461697	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			4								2	2		31.183	30.493	3;4	0.00099553	26223	160511_QHF_FH_JSI11i_3	47.204	37.546			1.0154	1.0524	29.647	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0659	1.2585	13.533	2	1	Median	0.89053	0.81651	24.126	2	1	Median	NaN	NaN	NaN	0	0	Median	128170000	68110000	60058000	0	0	0	74966000	35677000	39289000	53202000	32432000	20769000	0	0	0	34139	4856	32309	210116;210117;210118;210119	283665;283666;283667;283668	283665			4	
LSPTDNLPR	0	Unmodified	1011.5349	0.53490874	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	37.57	36.659	2	0.0057352	33143	160511_QHF_FH_JSI12i_1	55.37	20.014			0.98105	0.91616	11.858	2	0	Median	1.2043	0.99629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79917	0.84248	NaN	1	0	Median	235320000	125830000	109490000	94284000	43499000	50784000	0	0	0	0	0	0	141040000	82334000	58707000	34140	933	32310	210120;210121;210122	283669;283670;283671	283669			3	
LSPTEPK	1	Unmodified	770.41742	0.41741937	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.984	13.858	2	0.016622	11376	160511_QHF_FH_JSI11i_1	55.902	5.004			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34141	210	32311	210123	283672	283672			1	
LSPVAVQNYAYLK	1	Unmodified	1464.7977	0.79766537	5003	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.756	68.459	2	0.0049015	58994	160511_QHF_FH_JSI12i_2	62.303	48.397			0.14048	0.15748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14048	0.15748	NaN	1	1	Median	69691000	62440000	7251200	0	0	0	0	0	0	0	0	0	69691000	62440000	7251200	34142	5003	32312	210124	283673	283673			1	
LSPVGWVSSSQGK	1	Unmodified	1330.6881	0.68811492	2153	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	56.462	55.486	2	0.00015854	46483	160511_QHF_FH_JSI10i_3	107.03	68.733			0.85725	0.81801	10.314	5	2	Median	0.99295	0.81305	NaN	1	0	Median	0.67726	0.7845	19.226	2	2	Median	0.87228	0.81801	NaN	1	0	Median	0.85725	0.85895	NaN	1	0	Median	530250000	284410000	245840000	66751000	24186000	42565000	149780000	94694000	55085000	119880000	62991000	56889000	193840000	102540000	91303000	34143	2153	32313	210125;210126;210127;210128;210129	283674;283675;283676;283677;283678;283679;283680	283677			7	
LSPVSPALGVLQLHFFK	1	Unmodified	1852.0611	0.061090699	407	O60294	LCMT2	tRNA wybutosine-synthesizing protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	12.3	5.87			2						5	4		1	2	95.315	88.348	3	1.1119E-24	82235	160511_QHF_FH_JSI9i_3	140.84	122.92			0.87424	0.83232	6.9182	4	4	Median	0.93798	0.78127	8.2196	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88977	0.83664	NaN	1	1	Median	0.80185	0.8635	NaN	1	1	Median	407680000	231510000	176170000	202150000	115350000	86799000	0	0	0	148260000	78644000	69621000	57266000	37511000	19755000	34144	407	32314	210130;210131;210132;210133;210134;210135;210136	283681;283682;283683;283684;283685;283686;283687	283683			7	
LSPWIRPDSK	1	Unmodified	1197.6506	0.6506072	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		42.31	41.278	2;3	0.00055917	33873	160511_QHF_FH_JSI9i_3	62.633	40.64			1.0015	0.87038	16.941	6	1	Median	1.0015	0.81383	0.4894	2	0	Median	0.74919	0.87038	4.6305	2	0	Median	1.174	1.1223	16.234	2	1	Median	NaN	NaN	NaN	0	0	Median	1321300000	708490000	612860000	343090000	183400000	159690000	403570000	237940000	165630000	574680000	287150000	287530000	0	0	0	34145	197	32315	210137;210138;210139;210140;210141;210142;210143	283688;283689;283690;283691;283692;283693;283694;283695;283696;283697;283698	283695			11	
LSPYVHYTFR	0	Unmodified	1281.6506	0.6506072	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.87	6.56		1	6						8	4	5	3	3	53.704	48.23	2;3	0.00038781	26124	160513_QHF_FH_JSI11Kac_6	67.153	59.049			1.0165	0.96355	15.642	15	0	Median	1.0182	0.8742	5.3774	4	0	Median	0.72269	0.84051	11.015	5	0	Median	1.1254	1.0467	11.571	3	0	Plateau	1.0847	1.1788	12.572	3	0	Median	1885400000	996910000	888530000	579430000	283120000	296310000	735960000	424510000	311450000	288590000	146440000	142150000	281470000	142840000	138630000	34146	1388	32316	210144;210145;210146;210147;210148;210149;210150;210151;210152;210153;210154;210155;210156;210157;210158	283699;283700;283701;283702;283703;283704;283705;283706;283707;283708;283709;283710;283711;283712;283713;283714;283715;283716;283717;283718;283719;283720;283721;283722;283723	283704			25	
LSQAFNHWLK	1	Unmodified	1242.6509	0.65094155	722	O95749	GGPS1	Geranylgeranyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	51.829	50.979	2;3	0.0016237	42110	160511_QHF_FH_JSI9i_3	52.167	44.6			1.0179	0.88622	56.161	4	3	Median	1.9238	1.5809	66.763	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84796	0.79655	NaN	1	1	Median	0.7557	0.76321	NaN	1	1	Median	213260000	102110000	111150000	98945000	34875000	64070000	0	0	0	58842000	34692000	24150000	55471000	32540000	22931000	34147	722	32317	210159;210160;210161;210162	283724;283725;283726;283727	283725			4	
LSQAYAISAGVSLEGQQLFQTIHK	1	Unmodified	2588.3599	0.3598515	2818	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	97.992	97.998	3	2.9197E-29	84765	160511_QHF_FH_JSI12i_3	167.99	155.44			1.0511	0.99424	43.102	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3351	1.2684	34.446	2	1	Median	0.67771	0.68514	NaN	1	0	Median	147080000	81142000	65938000	0	0	0	0	0	0	61942000	28019000	33924000	85138000	53123000	32015000	34148	2818	32318	210163;210164;210165;210166	283728;283729;283730;283731;283732	283731			5	
LSQDEIVLGTK	1	Unmodified	1201.6554	0.65541781	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	49.309	48.628	2	0.00022383	43179	160511_QHF_FH_JSI9i_1	80.014	50.928			0.96345	1.0151	8.3618	4	0	Median	1.2052	1.0098	NaN	1	0	Median	0.90439	1.066	NaN	1	0	Median	0.9466	0.87878	NaN	1	0	Median	0.9806	1.0206	NaN	1	0	Median	284640000	143930000	140710000	78929000	35772000	43157000	73281000	44231000	29050000	68732000	27893000	40839000	63700000	36034000	27666000	34149	4625	32319	210167;210168;210169;210170	283733;283734	283734			2	
LSQECEK	1	Unmodified	892.39603	0.396032	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	5.8304	3.8286	2	0.0094456	3462	160511_QHF_FH_JSI12i_1	79.116	39.013			0.80462	0.86865	23.189	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80342	0.95351	NaN	1	0	Median	0.78844	0.77322	3.2766	2	0	Median	1.2061	1.2593	NaN	1	0	Median	1529600000	760740000	768840000	0	0	0	471790000	271020000	200770000	479900000	251820000	228080000	577880000	237900000	339980000	34150	1417	32320	210171;210172;210173;210174	283735;283736;283737;283738;283739;283740	283737			6	
LSQEDPDYGIR	0	Unmodified	1291.6044	0.60444487	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.215	33.612	2	2.5926E-05	30411	160511_QHF_FH_JSI12i_1	99.973	95.675			0.88531	0.88501	10.716	4	0	Median	0.9866	0.8185	NaN	1	0	Median	0.8898	1.0422	NaN	1	0	Median	0.85675	0.84907	NaN	1	0	Median	0.88085	0.92246	NaN	1	0	Median	647870000	352320000	295560000	166570000	78352000	88213000	159990000	108620000	51368000	200270000	100480000	99790000	121050000	64866000	56185000	34151	800	32321	210175;210176;210177;210178	283741;283742;283743;283744;283745	283743			5	
LSQELEYLTEDVK	1	Unmodified	1565.7825	0.78246882	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								3	3	4	3	71.447	70.824	2;3	9.4913E-16	64437	160511_QHF_FH_JSI11i_1	189.33	167.24			0.99553	0.98402	54.846	12	5	Median	0.72231	0.61679	19.278	2	1	Median	0.73821	0.86224	35.011	3	1	Median	1.001	0.98402	82.26	4	2	Median	1.0152	1.1086	8.5268	3	1	Median	1054200000	557040000	497120000	178020000	94043000	83976000	298690000	174250000	124440000	320750000	142030000	178720000	256700000	146720000	109980000	34152	1016	32322	210179;210180;210181;210182;210183;210184;210185;210186;210187;210188;210189;210190;210191	283746;283747;283748;283749;283750;283751;283752;283753;283754;283755;283756;283757;283758;283759;283760;283761;283762	283747			17	
LSQEQVDNFTLDINTAYAR	0	Unmodified	2197.0651	0.065126037	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	84.781	84.325	2	6.9242E-16	76733	160511_QHF_FH_JSI12i_1	171.67	141.24			1.5812	1.5436	26.276	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0289	1.9079	NaN	1	1	Median	1.1767	1.2136	4.0491	2	2	Median	72412000	26685000	45727000	0	0	0	0	0	0	24779000	7277400	17502000	47633000	19408000	28225000	34153	2780	32323	210192;210193;210194;210195	283763;283764;283765;283766	283764			4	
LSQERPGVLLNQFPCENLLTVK	1	Unmodified	2554.3577	0.35774301	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			90.662	89.77	3	0.00014578	79657	160511_QHF_FH_JSI10i_2	53.779	40.459			0.71693	0.83897	9.419	3	1	Plateau	0.97962	0.80975	NaN	1	0	Median	0.6296	0.76755	12.583	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60433000	37689000	22743000	21147000	12597000	8550000	39286000	25093000	14193000	0	0	0	0	0	0	34154	2509	32324	210196;210197;210198	283767;283768;283769;283770;283771;283772	283772			6	
LSQETEALGR	0	Unmodified	1102.5619	0.56185177	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								2	1		1	22.244	21.504	2	0.00038265	18761	160511_QHF_FH_JSI12i_1	76.282	43.283			0.84326	0.78896	12.857	4	1	Median	0.92362	0.78896	0.91676	2	0	Median	0.54585	0.62582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79164	0.83616	NaN	1	0	Median	972700000	569180000	403520000	356460000	180450000	176010000	321250000	209210000	112040000	0	0	0	294990000	179520000	115460000	34155	2195	32325	210199;210200;210201;210202	283773;283774;283775;283776;283777	283773			5	
LSQEYESIDPGQQFTWEHSNLEVNKPK	2	Unmodified	3202.5207	0.52072183	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	69.459	69.094	4	8.4486E-18	59852	160511_QHF_FH_JSI12i_3	106.51	100.73			0.97998	0.91787	32.931	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2272	1.5034	NaN	1	1	Median	0.97998	0.91787	NaN	1	0	Median	0.80013	0.80511	NaN	1	0	Median	137520000	65404000	72117000	0	0	0	18841000	6443700	12398000	66568000	27692000	38876000	52112000	31268000	20844000	34156	2390	32326	210203;210204;210205	283778;283779;283780;283781;283782	283782			5	
LSQGVTLVVDR	0	Unmodified	1185.6717	0.67173657	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	48.733	47.987	2	9.1132E-05	41131	160511_QHF_FH_JSI12i_2	88.681	46.082			0.72856	0.78764	33.313	6	0	Median	1.4614	1.2464	NaN	1	0	Median	0.52277	0.62453	NaN	1	0	Median	0.7384	0.72432	50.4	2	0	Median	0.72856	0.78764	15.125	2	0	Median	514900000	274110000	240790000	173650000	74170000	99481000	77236000	54006000	23230000	119260000	65316000	53942000	144750000	80618000	64136000	34157	1241	32327	210206;210207;210208;210209;210210;210211	283783;283784;283785	283783			3	
LSQILTDFPK	1	Unmodified	1160.6441	0.64412484	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.704	66.405	2	0.00070232	57056	160511_QHF_FH_JSI12i_2	84.817	60.787			0.12435	0.14047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12435	0.14047	NaN	1	1	Median	803470000	739320000	64153000	0	0	0	0	0	0	0	0	0	803470000	739320000	64153000	34158	4559	32328	210212	283786	283786			1	
LSQKWQVINQR	1	Acetyl (K)	1440.7837	0.78374664	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.847	54.162	2	0.001329	29315	160513_QHF_FH_JSI11Kac_6	84.213	65.467			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6966400	6966400	0	0	0	0	0	0	0	6966400	6966400	0	0	0	0	34159	4831	32329	210213	283787	283787	3242		1	
LSQLEEHLSQLQDNPPQEK	1	Unmodified	2232.1022	0.10223983	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	55.24	54.661	3;4	9.1493E-14	48389	160511_QHF_FH_JSI11i_3	142.23	118.21			0.97443	1.0016	21.749	7	2	Median	1.0464	0.90824	NaN	1	0	Median	0.8293	1.0019	NaN	1	0	Median	1.0599	1.0016	28.549	3	1	Median	0.82225	0.85042	31.005	2	1	Median	978570000	478600000	499960000	105980000	56851000	49133000	157650000	89916000	67738000	451190000	192490000	258700000	263740000	139350000	124390000	34160	2587	32330	210214;210215;210216;210217;210218;210219;210220	283788;283789;283790;283791;283792;283793;283794;283795;283796;283797;283798	283788			11	
LSQLEGVNVER	0	Unmodified	1242.6568	0.65681479	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	41.622	40.876	2	1.5531E-09	35719	160511_QHF_FH_JSI9i_2	122.69	66.128			0.91882	0.99457	12.177	7	2	Median	1.1819	0.98684	NaN	1	0	Median	0.79841	0.9636	23.218	2	0	Median	1.0481	1.0474	4.0924	2	0	Median	0.85959	0.91387	11.967	2	2	Median	2445400000	1320700000	1124800000	225750000	117270000	108480000	715710000	425510000	290200000	778970000	369910000	409060000	725010000	407990000	317020000	34161	4212	32331	210221;210222;210223;210224;210225;210226;210227	283799;283800;283801;283802;283803;283804;283805;283806;283807;283808	283805			10	
LSQLTHGITELGPYTLDR	0	Unmodified	2013.0531	0.053104788	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.661	72.661	3	9.8175E-05	64734	160511_QHF_FH_JSI11i_3	60.747	53.689			1.3039	1.1951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3039	1.1951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91163000	38801000	52362000	0	0	0	0	0	0	91163000	38801000	52362000	0	0	0	34162	3812	32332	210228	283809	283809			1	
LSQLVNSNNLK	1	Unmodified	1228.6776	0.67755023	5326	Q9UI42	CPA4	Carboxypeptidase A4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	38.65	37.292	2	0.017173	31779	160511_QHF_FH_JSI12i_2	44.425	17.536			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34163	5326	32333	210229	283810	283810			1	
LSQMAVQGLQQFK	1	Unmodified	1476.7759	0.77588407	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	3	1	63.364	62.595	2	2.0425E-23	54016	160511_QHF_FH_JSI12i_3	183.03	161.63			0.98946	0.95337	34.166	9	3	Median	1.0601	0.8856	9.893	2	0	Median	0.83308	1.0384	59.331	3	1	Median	0.98946	0.95337	27.527	3	2	Median	1.078	1.1008	NaN	1	0	Median	1399300000	751960000	647300000	207810000	97434000	110380000	401920000	226990000	174930000	368370000	181170000	187200000	421160000	246370000	174790000	34164	5285	32334	210230;210231;210232;210233;210234;210235;210236;210237;210238	283811;283812;283813;283814;283815;283816;283817;283818;283819;283820;283821;283822;283823;283824;283825	283825			15	
LSQMAVQGLQQFK	1	Oxidation (M)	1492.7708	0.77079869	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	1	0		By MS/MS		By MS/MS	3	0			2								1		1	53.011	52.776	2	0.0019824	43952	160511_QHF_FH_JSI10i_3	66.19	50.924			1.3556	1.405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3556	1.405	NaN	1	1	Median	39526000	15491000	24036000	0	0	0	0	0	0	0	0	0	39526000	15491000	24036000	34165	5285	32334	210239;210240	283826;283827	283826		2623	2	
LSQMILDK	1	Unmodified	946.51575	0.5157532	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	82.462	82.091	2	0.011933	35394	160511_QHF_FH_JSI11i_2	62.558	29.717			0.92121	0.90697	41.34	6	2	Median	1.0577	0.85086	NaN	1	0	Median	0.89509	1.0659	NaN	1	0	Median	0.69653	0.68849	67.728	2	1	Median	0.64746	0.68862	47.98	2	1	Median	633230000	380020000	253210000	19491000	7997600	11494000	36934000	15843000	21091000	326820000	205690000	121140000	249980000	150490000	99490000	34166	109	32335	210241;210242;210243;210244;210245;210246	283828;283829;283830	283830			3	
LSQNNFALGYK	1	Unmodified	1253.6404	0.64043645	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.09		4	3					1	2	3	2	2	3	51.203	49.142	2	4.8585E-07	42147	160511_QHF_FH_JSI12i_3	115.71	86.565			1.0965	1.0916	15.478	8	1	Median	1.3616	1.1599	21.998	3	1	Median	0.85961	1.0174	14.947	2	0	Median	1.0109	1.0538	NaN	1	0	Median	1.061	1.1235	10.113	2	0	Median	2422800000	1241200000	1181600000	428870000	182640000	246240000	525880000	275110000	250770000	707170000	364290000	342880000	760920000	419180000	341740000	34167	5499	32336	210247;210248;210249;210250;210251;210252;210253;210254;210255;210256	283831;283832;283833;283834;283835;283836;283837;283838;283839;283840;283841;283842;283843;283844;283845;283846;283847	283846			17	
LSQNSMHSSPASSNYQQTTISHSPSSR	0	Unmodified	2918.3213	0.32131051	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				28.244	26.876	4	0.00020245	21852	160511_QHF_FH_JSI9i_3	46.678	44.171			1.359	1.1353	NaN	1	1	Median	1.359	1.1353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14173000	6219800	7952800	14173000	6219800	7952800	0	0	0	0	0	0	0	0	0	34168	3063	32337	210257	283848	283848			1	
LSQNSVNLSPSSHANNLSVVTYSK	1	Unmodified	2545.2772	0.27724408	4746	Q9H6K1	C6orf106	Uncharacterized protein C6orf106	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.33	6.67		1	2						3		3	2	1	62.342	57.33	3	5.1685E-14	31566	160513_QHF_FH_JSI10Kac_6	102.67	79.773			0.81233	0.87868	22.492	5	0	Median	NaN	NaN	NaN	0	0	Median	0.80261	0.91914	24.294	2	0	Median	1.0029	0.94546	37.382	2	0	Median	0.81233	0.87868	NaN	1	0	Median	158780000	78960000	79825000	0	0	0	54227000	22156000	32071000	77300000	42969000	34331000	27258000	13835000	13423000	34169	4746	32338	210258;210259;210260;210261;210262;210263	283849;283850;283851;283852;283853;283854;283855;283856;283857;283858	283858			10	
LSQPFESYITAPPGTAAAPAK	1	Unmodified	2116.0841	0.084070566	4090	Q96GE9	TMEM261	Transmembrane protein 261	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	6									2	2	2		75.562	75.172	2;3	5.3764E-10	68217	160511_QHF_FH_JSI10i_1	112.44	99.724			0.78173	0.90238	20.355	4	3	Median	0.74764	0.6249	NaN	1	1	Median	0.76208	0.91444	8.8273	2	2	Median	0.96866	0.94783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	336390000	173440000	162950000	96069000	48458000	47611000	156780000	76357000	80421000	83545000	48624000	34921000	0	0	0	34170	4090	32339	210264;210265;210266;210267;210268;210269	283859;283860;283861;283862;283863;283864	283862			5	
LSQQEEQK	1	Unmodified	988.48254	0.48253882	483	O75151	PHF2	Lysine-specific demethylase PHF2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		2	1	11.812	11.374	2	0.04312	9006	160511_QHF_FH_JSI11i_1	38.792	1.0642			0.99248	0.94131	21.811	5	0	Median	0.91804	0.76287	29.724	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99918	0.99536	3.111	2	0	Median	0.68955	0.71751	NaN	1	0	Median	2243200000	1232100000	1011200000	715730000	353320000	362410000	0	0	0	965110000	549630000	415470000	562400000	329090000	233310000	34171	483	32340	210270;210271;210272;210273;210274	283865	283865			1	
LSQSLLELWR	0	Unmodified	1243.6925	0.69247202	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.319	87.187	2	0.00036607	75722	160511_QHF_FH_JSI12i_3	89.827	51.051			0.98717	0.98107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98717	0.98107	NaN	1	1	Median	77072000	39405000	37668000	0	0	0	0	0	0	0	0	0	77072000	39405000	37668000	34172	3221	32341	210275	283866	283866			1	
LSQSVIDGVTVLGGQFHDYGLLTTPQLHYMVYCR	0	Unmodified	3866.9124	0.91240091	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	94.17	84.728	4	9.1087E-77	45923	160513_QHF_FH_JSI12Kac_6	186.85	176.91			1.1301	1.1905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1301	1.1905	NaN	1	0	Median	68128000	25805000	42323000	0	0	0	0	0	0	0	0	0	68128000	25805000	42323000	34173	690	32342	210276	283867;283868	283867			2	
LSQTSNVDK	1	Unmodified	990.49819	0.49818889	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7449	8.3941	2	0.0020074	6228	160511_QHF_FH_JSI10i_1	66.568	28.407			1.2106	1.2901	38.639	4	0	Median	1.9182	1.6044	NaN	1	0	Median	1.0895	1.2695	NaN	1	0	Median	1.3453	1.3111	NaN	1	0	Median	0.62453	0.65898	NaN	1	0	Median	1188800000	542320000	646530000	340930000	108660000	232270000	340150000	157460000	182690000	259930000	120940000	138980000	247830000	155250000	92580000	34174	1010	32343	210277;210278;210279;210280	283869;283870;283871;283872;283873;283874;283875;283876	283874			8	
LSQTSNVDKEEEAVTIEMNEPVQLTFALR	1	Unmodified	3290.634	0.63403702	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		100.39	100.31	3	4.8088E-19	87984	160511_QHF_FH_JSI11i_2	105.84	95.032			1.0207	0.9494	12.585	4	1	Median	1.1621	0.99002	NaN	1	0	Median	0.74697	0.91045	NaN	1	1	Median	1.0826	1.0226	19.618	2	0	Median	NaN	NaN	NaN	0	0	Median	129290000	66049000	63242000	39208000	18471000	20737000	26993000	18441000	8552400	63089000	29137000	33952000	0	0	0	34175	1010	32344	210281;210282;210283;210284	283877;283878;283879;283880;283881;283882;283883	283880			7	
LSQVPDNPPDYQK	1	Unmodified	1499.7256	0.72562264	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	36.863	36.466	2	0.0026207	32893	160511_QHF_FH_JSI12i_1	66.056	56.368			1.3629	1.4649	89.184	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0594	1.2572	13.816	2	2	Median	1.5935	1.5482	NaN	1	1	Median	7.3785	7.8769	NaN	1	1	Median	841780000	112680000	729100000	0	0	0	117120000	54320000	62797000	59230000	24940000	34290000	665430000	33417000	632020000	34176	1621	32345	210285;210286;210287;210288;210289	283884;283885;283886;283887;283888	283885			5	
LSQVPMSALK	1	Unmodified	1072.5951	0.59506616	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	48.379	47.583	2	5.6751E-05	40809	160511_QHF_FH_JSI12i_2	108.57	108.57			0.9755	1.0231	16.636	6	1	Median	0.9539	0.8147	NaN	1	0	Median	0.7804	0.94619	22.945	2	1	Median	1.0438	1.0328	13.226	2	0	Median	1.0436	1.1521	NaN	1	0	Median	403130000	210450000	192680000	49314000	22633000	26681000	122270000	67149000	55120000	154790000	74289000	80503000	76752000	46378000	30374000	34177	3264	32346	210290;210291;210292;210293;210294;210295	283889;283890;283891;283892;283893	283890			5	
LSQVSDSVSGQTVVDPK	1	Unmodified	1744.8843	0.88430813	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.523	43.857	2	1.3437E-07	39845	160511_QHF_FH_JSI12i_1	130.2	106.96			0.97519	0.97923	11.185	4	0	Median	1.3697	1.0944	NaN	1	0	Median	0.74748	0.8938	NaN	1	0	Median	1.0999	1.0728	NaN	1	0	Median	0.86463	0.89262	NaN	1	0	Median	200440000	102370000	98068000	40014000	19994000	20020000	54614000	28733000	25881000	53420000	24997000	28424000	52391000	28648000	23744000	34178	623	32347	210296;210297;210298;210299	283894;283895;283896;283897;283898;283899;283900;283901;283902	283897			9	
LSQYLDSSQVK	1	Unmodified	1266.6456	0.6455814	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	35.254	34.514	2	0.00068183	30936	160511_QHF_FH_JSI11i_1	82.489	54.665			1.165	1.0365	15.47	2	2	Median	1.3927	1.1563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97452	0.9291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	686610000	368480000	318140000	360590000	168620000	191970000	0	0	0	326030000	199860000	126170000	0	0	0	34179	3860	32348	210300;210301;210302;210303	283903;283904;283905;283906	283903			4	
LSQYLIQLVQVLK	1	Unmodified	1543.9338	0.93376492	1533	P42336	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.91	101.73	2	0.000184	82642	160511_QHF_FH_JSI9i_3	105.46	91.225			0.58752	0.46988	NaN	1	1	Median	0.58752	0.46988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30881000	19530000	11351000	30881000	19530000	11351000	0	0	0	0	0	0	0	0	0	34180	1533	32349	210304	283907;283908	283907			2	
LSQYPNENLHSAVTK	1	Unmodified	1699.8529	0.85294842	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	33.781	33.018	3	0.0081615	28048	160511_QHF_FH_JSI12i_2	39.685	30.154			1.1328	1.052	21.734	5	2	Median	1.2496	1.052	NaN	1	1	Median	0.62631	0.76682	NaN	1	1	Median	0.89248	0.88763	NaN	1	0	Median	1.2589	1.2527	5.336	2	0	Median	187800000	95578000	92226000	40366000	17142000	23224000	45206000	23555000	21651000	46390000	29972000	16419000	55841000	24910000	30931000	34181	15	32350	210305;210306;210307;210308;210309	283909;283910;283911;283912	283909			4	
LSREEPSNPFLAFVEK	1	Unmodified	1861.9574	0.95741349	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.99	83.99	3	0.00274	74988	160511_QHF_FH_JSI11i_3	57.173	44.888			0.70963	0.66135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70963	0.66135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28862000	15249000	13613000	0	0	0	0	0	0	28862000	15249000	13613000	0	0	0	34182	3239	32351	210310	283913	283913			1	
LSREPSFIVVHYAGPVR	0	Unmodified	1926.0476	0.0475659	4103	Q96H55	MYO19	Unconventional myosin-XIX	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			65.745	57.244	4	0.00095691	31519	160513_QHF_FH_JSI10Kac_6	59.434	42.153			1.3907	1.3978	13.172	2	0	Median	1.4958	1.2735	NaN	1	0	Median	1.2929	1.5342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59517000	21261000	38256000	25766000	10739000	15028000	33751000	10522000	23229000	0	0	0	0	0	0	34183	4103	32352	210311;210312	283914;283915;283916	283915			3	
LSSAGLIYLHFGHK	1	Unmodified	1541.8354	0.83544786	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			6						14	5	6	4	5	69.75	63.647	2;3;4	6.1792E-63	33263	160513_QHF_FH_JSI12Kac_6	212.72	163.42			0.87081	0.81639	33.471	18	0	Median	0.95643	0.81639	7.2659	4	0	Median	0.53919	0.64245	39.052	6	0	Median	1.2661	1.0548	14.768	4	0	Linear	0.78602	0.81986	19.13	4	0	Median	3350800000	1756200000	1594500000	517180000	270790000	246390000	1245200000	789100000	456130000	977130000	371940000	605190000	611240000	324410000	286830000	34184	4834	32353	210313;210314;210315;210316;210317;210318;210319;210320;210321;210322;210323;210324;210325;210326;210327;210328;210329;210330;210331;210332	283917;283918;283919;283920;283921;283922;283923;283924;283925;283926;283927;283928;283929;283930;283931;283932;283933;283934;283935;283936;283937;283938;283939;283940;283941;283942;283943;283944;283945;283946;283947;283948	283943			30	
LSSAHVYLR	0	Unmodified	1044.5716	0.5716286	3363	Q86WR0	CCDC25	Coiled-coil domain-containing protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	29.258	23.837	3	0.00018355	19221	160511_QHF_FH_JSI9i_3	63.184	50.228			1.1098	0.94044	17.616	7	1	Median	1.1232	0.92069	3.0011	2	0	Median	0.74873	0.89464	16.008	2	0	Median	1.2252	1.2084	NaN	1	0	Median	1.0769	1.117	24.699	2	1	Median	317760000	160660000	157100000	121310000	54577000	66730000	122440000	73726000	48717000	13393000	5847500	7545500	60615000	26511000	34104000	34185	3363	32354	210333;210334;210335;210336;210337;210338;210339	283949;283950;283951;283952;283953;283954;283955;283956;283957;283958;283959;283960	283953			12	
LSSAIAFTYNPR	0	Unmodified	1338.6932	0.6932003	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		68.85	59.739	2	0.0032093	31687	160513_QHF_FH_JSI9Kac_6	87.568	50.092			1.204	1.1009	25.236	2	1	Median	1.0778	0.92095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.345	1.3159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60228000	27131000	33098000	19384000	7838000	11546000	0	0	0	40845000	19293000	21552000	0	0	0	34186	1718	32355	210340;210341	283961;283962	283962			2	
LSSAMSAAK	1	Unmodified	864.4375	0.43750288	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.29	4	4	4				1			3	3	4	3	14.337	13.295	2	0.00016118	10529	160511_QHF_FH_JSI11i_2	88.37	68.523			1.1665	1.2477	25.824	13	2	Median	1.6316	1.3078	26.068	3	0	Median	0.94124	1.09	20.188	3	0	Median	1.4579	1.3941	31.475	4	2	Median	0.94472	1.0456	16.814	3	0	Median	8389100000	4216900000	4172200000	1925500000	732140000	1193300000	2191500000	1212400000	979050000	2042200000	1123000000	919180000	2230000000	1149400000	1080600000	34187	1503	32356	210342;210343;210344;210345;210346;210347;210348;210349;210350;210351;210352;210353;210354	283963;283964;283965;283966;283967;283968;283969;283970;283971;283972;283973;283974;283975;283976;283977;283978;283979;283980;283981;283982;283983	283978			21	
LSSAMSAAK	1	Oxidation (M)	880.43242	0.43241751	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	13.985	13.388	2	0.0089766	10521	160511_QHF_FH_JSI11i_2	55.112	43.207			0.9536	0.97849	46.282	3	0	Median	1.4815	1.2379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9536	0.97849	NaN	1	0	Median	0.4639	0.50687	NaN	1	0	Median	808840000	377750000	431090000	227890000	81507000	146380000	0	0	0	391300000	185420000	205880000	189650000	110830000	78825000	34188	1503	32356	210355;210356;210357	283984;283985;283986	283986		1180	3	
LSSANGHEER	0	Unmodified	1098.5054	0.50539953	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	9.43	6.43		3						4		2	2	2	1	4.9574	-0.58432	2;3	0.0013105	1420	160513_QHF_FH_JSI9Kac_5	59.198	46.162			1.1311	1.1094	23.613	7	0	Median	1.359	1.1526	32.295	2	0	Median	0.97974	1.1734	42.334	2	0	Median	1.2517	1.2492	16.778	2	0	Median	0.92178	1.04	NaN	1	0	Median	270290000	115990000	154300000	82672000	30613000	52059000	83614000	39084000	44530000	99505000	43854000	55651000	4497300	2436900	2060400	34189	2538	32357	210358;210359;210360;210361;210362;210363;210364	283987;283988;283989	283987			3	
LSSAWPGTLR	0	Unmodified	1086.5822	0.58219329	5354	Q9UJY1	HSPB8	Heat shock protein beta-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			52.673	51.102	2	0.0036453	41919	160511_QHF_FH_JSI9i_3	68.846	60.427			1.7177	1.4285	11.702	3	3	Plateau	1.7569	1.4285	NaN	1	1	Median	1.1518	1.3098	14.957	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	330690000	141470000	189230000	111810000	37004000	74808000	218880000	104460000	114420000	0	0	0	0	0	0	34190	5354	32358	210365;210366;210367	283990;283991;283992	283992			3	
LSSCDSFTSTINELNHCLSLR	0	Unmodified	2453.1315	0.13150782	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	1	2	93.053	92.948	3	4.3683E-13	82897	160511_QHF_FH_JSI11i_3	116.65	108.46			1.1011	1.1821	14.665	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0093	1.2515	NaN	1	1	Median	1.1011	1.0454	NaN	1	0	Median	1.2537	1.2773	19.014	2	2	Median	211390000	96061000	115330000	0	0	0	30620000	16226000	14394000	56637000	26900000	29737000	124140000	52935000	71202000	34191	878	32359	210368;210369;210370;210371;210372	283993;283994;283995;283996;283997;283998;283999	283995			7	
LSSDDGDSSTMR	0	Unmodified	1269.5143	0.51430923	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		11.91	11.726	2	0.024068	9455	160511_QHF_FH_JSI10i_1	41.283	20.382			1.2278	1.2907	32.105	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90872	1.0286	NaN	1	0	Median	1.659	1.6196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88364000	32178000	56187000	0	0	0	34560000	17756000	16804000	53805000	14422000	39383000	0	0	0	34192	3063	32360	210373;210374	284000	284000			1	
LSSDQNDK	1	Unmodified	905.40904	0.40903953	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	4.7377	4.5172	2	0.0030338	2351	160511_QHF_FH_JSI12i_1	82.279	42.736			0.32052	0.32407	32.422	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42268	0.40757	NaN	1	1	Median	0.24306	0.25767	NaN	1	1	Median	1383100000	1147500000	235550000	0	0	0	0	0	0	564480000	451700000	112780000	818590000	695810000	122780000	34193	2207	32361	210375;210376	284001;284002	284002			2	
LSSDVLTLLIK	1	Unmodified	1200.7329	0.73293985	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.1	2	4	5						4	3	4	4	4	98.414	96.135	2	2.5889E-09	86766	160511_QHF_FH_JSI12i_2	128.91	109.63			1.2137	1.0771	18.311	15	5	Median	1.2137	1.0318	13.048	3	1	Plateau	0.85508	0.98137	7.9029	4	1	Median	0.99467	1.0095	17.421	4	1	Linear	1.1816	1.2319	24.876	4	2	Median	2262800000	1124900000	1137900000	472210000	218380000	253830000	494890000	256970000	237920000	611470000	283660000	327810000	684230000	365840000	318390000	34194	1459	32362	210377;210378;210379;210380;210381;210382;210383;210384;210385;210386;210387;210388;210389;210390;210391	284003;284004;284005;284006;284007;284008;284009;284010;284011;284012;284013;284014;284015;284016;284017;284018;284019;284020;284021;284022;284023	284004			21	
LSSEMNTSTVNSAR	0	Unmodified	1495.6937	0.69367058	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.04	4	3				1	1			2	2	4	1	27.542	25.028	2	3.2426E-10	22007	160511_QHF_FH_JSI11i_1	152.38	138.26			0.99237	0.98581	14.335	9	0	Median	1.1541	0.96527	5.8538	2	0	Median	0.81969	0.99662	25.878	2	0	Median	1.0905	1.0697	13.78	4	0	Median	0.8117	0.85467	NaN	1	0	Median	1306000000	649040000	656910000	371120000	172860000	198260000	315200000	191500000	123700000	298710000	119950000	178750000	320930000	164730000	156200000	34195	1180	32363	210392;210393;210394;210395;210396;210397;210398;210399;210400	284024;284025;284026;284027;284028;284029;284030;284031;284032;284033;284034;284035;284036;284037;284038	284025			15	
LSSEMNTSTVNSAR	0	Oxidation (M)	1511.6886	0.68858521	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	25.759	25.101	2	0.0001881	22010	160511_QHF_FH_JSI11i_1	101.53	86.389			1.1704	1.5054	31.302	3	0	Plateau	1.8148	1.5054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92237	0.88976	NaN	1	0	Median	1.4851	1.5531	NaN	1	0	Median	219700000	102150000	117560000	63034000	24643000	38391000	0	0	0	80119000	44733000	35386000	76551000	32770000	43781000	34196	1180	32363	210401;210402;210403	284039;284040	284039		808	2	
LSSEMNTSTVNSAREELMESR	0	Unmodified	2370.0791	0.079137897	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		60.435	59.537	3	3.8479E-22	52775	160511_QHF_FH_JSI10i_2	155.49	146.84			1.1933	1.1438	21.539	6	0	Median	1.7785	1.4735	34.481	2	0	Median	0.91432	1.0801	6.776	2	0	Median	1.1933	1.1579	4.6984	2	0	Median	NaN	NaN	NaN	0	0	Median	1708800000	819090000	889740000	583360000	267570000	315800000	824560000	409570000	415000000	300900000	141950000	158950000	0	0	0	34197	1180	32364	210404;210405;210406;210407;210408;210409	284041;284042;284043;284044;284045;284046;284047;284048	284048			8	
LSSEQFHEAASK	1	Unmodified	1332.631	0.63099397	4379	Q9BRQ6	CHCHD6	MICOS complex subunit MIC25	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	21.718	21.709	2;3	0.0047949	17803	160511_QHF_FH_JSI12i_3	55.401	46.187			1.1801	1.1746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1801	1.1746	NaN	1	0	Median	60624000	23483000	37142000	0	0	0	0	0	0	0	0	0	60624000	23483000	37142000	34198	4379	32365	210410;210411	284049;284050	284049			1	
LSSETGGMGSS	0	Oxidation (M)	1027.4128	0.41280428	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	6	5	3			3							2	2	2	8.6216	4.7328	2	0.00088408	2682	160513_QHF_FH_JSI12Kacf_1	80.438	80.438			1.0385	1.0077	23.914	6	0	Median	NaN	NaN	NaN	0	0	Median	0.94359	1.0862	17.823	2	0	Median	1.0409	1.0077	4.4291	2	0	Median	1.2316	1.2996	42.882	2	0	Median	247550000	118930000	128620000	0	0	0	90115000	46032000	44083000	69556000	34386000	35170000	87879000	38513000	49367000	34199	2657	32366	210412;210413;210414;210415;210416;210417	284051;284052;284053;284054	284052		2083	4	
LSSETGGMGSS	0	Unmodified	1011.4179	0.41788965	2657	Q15366	PCBP2	Poly(rC)-binding protein 2	yes	yes	0	0	0	0			By MS/MS		11	0				1								1		22.018	14.627	2	0.0051396	6869	160513_QHF_FH_JSI11Kac_1	60.91	60.91			0.80998	0.78385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80998	0.78385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9027700	3550400	5477300	0	0	0	0	0	0	9027700	3550400	5477300	0	0	0	34200	2657	32366	210418	284055	284055			1	
LSSETYSQAK	1	Unmodified	1112.535	0.53496832	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.86	5	4					2			3	3	3	2	18.658	16.663	2	0.00017227	11736	160511_QHF_FH_JSI12i_1	82.749	52.583			0.89358	0.98632	91.346	11	2	Median	0.89358	0.78841	124.27	3	0	Median	1.0217	1.2086	22.034	3	0	Plateau	1.1516	1.1593	94.882	3	1	Median	0.72514	0.77813	11.021	2	1	Median	3824500000	1930700000	1893800000	738160000	389940000	348220000	894480000	549420000	345060000	1419400000	572130000	847270000	772430000	419180000	353250000	34201	2282	32367	210419;210420;210421;210422;210423;210424;210425;210426;210427;210428;210429	284056;284057;284058;284059;284060;284061;284062;284063;284064;284065;284066;284067;284068;284069	284059			14	
LSSFWQLIVDEK	1	Unmodified	1463.766	0.76603089	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	1	2	95.913	90.983	2	9.3058E-07	49228	160513_QHF_FH_JSI10Kac_6	124.06	98.017			0.8603	0.90362	22.616	8	5	Median	1.1896	0.99574	34.596	2	1	Median	0.7665	0.90856	12.379	3	3	Median	1.4091	1.342	NaN	1	0	Median	0.74303	0.77529	3.3833	2	1	Median	663190000	371870000	291310000	89820000	36862000	52958000	370810000	221010000	149800000	49859000	29696000	20163000	152700000	84303000	68397000	34202	3860	32368	210430;210431;210432;210433;210434;210435;210436;210437	284070;284071;284072;284073;284074;284075;284076;284077;284078	284077			8	
LSSFYSLK	1	Unmodified	943.50148	0.50148335	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.44	2	4	4					1	4	4	4	4	3	53.937	50.204	2	0.0033437	44494	160511_QHF_FH_JSI10i_2	73.26	52.978			0.95271	0.93935	13.133	15	0	Median	1.1257	0.94932	15.21	4	0	Median	0.87731	1.0456	15.024	4	0	Median	0.9305	0.91664	5.6092	4	0	Median	0.83299	1.0171	14.431	3	0	Plateau	6902000000	3474300000	3427700000	1091100000	536320000	554770000	1287500000	698850000	588700000	2297300000	1157100000	1140100000	2226100000	1082000000	1144100000	34203	1464	32369	210438;210439;210440;210441;210442;210443;210444;210445;210446;210447;210448;210449;210450;210451;210452	284079;284080;284081;284082;284083;284084;284085;284086;284087;284088;284089;284090;284091;284092;284093;284094;284095;284096;284097;284098	284094			20	
LSSGNEENKK	2	Unmodified	1104.5411	0.54111633	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2	0		4									2	1	1	4.7563	4.3614	2;3	0.0001215	2182	160511_QHF_FH_JSI12i_2	63.408	40.767			0.81637	0.89676	24.958	4	0	Median	NaN	NaN	NaN	0	0	Median	0.71869	0.87314	24.107	2	0	Median	0.78564	0.77668	NaN	1	0	Median	1.108	1.2519	NaN	1	0	Median	435120000	193260000	241860000	0	0	0	218700000	109970000	108720000	64027000	27444000	36582000	152400000	55846000	96554000	34204	5296	32370	210453;210454;210455;210456	284099;284100	284099			2	
LSSGNEENKKEEDNDEIK	3	Unmodified	2076.9447	0.94473613	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.683	4	11	6							2	5	9	5	11.268	10.994	2;3;4	2.7286E-07	8539	160511_QHF_FH_JSI11i_3	124.26	96.41			0.89052	0.90496	31.545	20	11	Median	1.1364	0.97228	1.5929	2	0	Median	0.92803	1.1028	48.972	4	3	Median	0.91097	0.91261	32.782	9	5	Median	0.80798	0.81657	23.237	5	3	Median	2607900000	1430500000	1177400000	305040000	116700000	188350000	662760000	376170000	286600000	1297300000	753740000	543580000	342750000	183850000	158890000	34205	5296	32371	210457;210458;210459;210460;210461;210462;210463;210464;210465;210466;210467;210468;210469;210470;210471;210472;210473;210474;210475;210476;210477	284101;284102;284103;284104;284105;284106;284107;284108;284109;284110;284111;284112;284113;284114;284115;284116;284117;284118;284119;284120;284121;284122;284123;284124;284125;284126	284103			26	
LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK	1	Unmodified	3661.7132	0.71322664	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	2	1	2	56.019	55.365	4	1.9006E-61	49090	160511_QHF_FH_JSI11i_3	170.44	165.63			0.79083	0.86049	14.276	6	2	Median	1.2931	1.1086	NaN	1	0	Median	0.69119	0.81061	1.1246	2	1	Median	1.0061	0.95559	NaN	1	0	Median	0.77542	0.82214	13.766	2	1	Median	877330000	430560000	446770000	114440000	46757000	67685000	155510000	85771000	69740000	322090000	149840000	172250000	285280000	148190000	137090000	34206	3111	32372	210478;210479;210480;210481;210482;210483	284127;284128;284129;284130;284131;284132;284133;284134;284135;284136;284137;284138;284139;284140;284141	284128			15	
LSSHPVLSK	1	Unmodified	966.54983	0.54983053	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	15.654	15.206	2;3	0.00047062	11793	160511_QHF_FH_JSI12i_3	59.426	36.686			0.8624	0.833	31.772	9	4	Median	1.1658	0.95067	5.2311	2	0	Median	0.70441	0.80626	14.171	2	2	Median	0.89677	0.833	40.015	3	2	Median	0.55955	0.57428	10.121	2	0	Median	2209600000	933070000	1276600000	390030000	132660000	257360000	476790000	107030000	369760000	727970000	297600000	430360000	614850000	395770000	219080000	34207	5687	32373	210484;210485;210486;210487;210488;210489;210490;210491;210492	284142;284143;284144;284145;284146;284147;284148;284149;284150	284149			8	
LSSIIDCTGTASYHGFLPVLVR	0	Unmodified	2405.2413	0.24131626	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	98.958	98.885	3	8.5013E-23	85512	160511_QHF_FH_JSI12i_3	148.44	139.62			0.94697	1.1131	26.474	5	5	Median	NaN	NaN	NaN	0	0	Median	0.79757	0.93414	24.788	2	2	Median	0.88727	0.83515	NaN	1	1	Median	1.2714	1.3094	20.44	2	2	Median	189790000	93360000	96435000	0	0	0	36628000	22633000	13995000	37700000	20940000	16760000	115470000	49787000	65680000	34208	3290	32374	210493;210494;210495;210496;210497	284151;284152;284153;284154;284155	284155			5	
LSSLDNLK	1	Unmodified	888.49165	0.49164694	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	36.127	35.433	2	0.020102	31223	160511_QHF_FH_JSI10i_2	52.403	23.874			0.76078	0.82097	24.083	7	0	Median	0.97859	0.81677	32.879	2	0	Median	0.68896	0.8249	6.8597	2	0	Median	0.81894	0.8224	0.24478	2	0	Median	0.48106	0.4865	NaN	1	0	Median	2231200000	1218700000	1012500000	496520000	264090000	232430000	686070000	371870000	314210000	869410000	480650000	388760000	179230000	102110000	77127000	34209	2252	32375	210498;210499;210500;210501;210502;210503;210504	284156;284157;284158;284159	284159			4	
LSSLFVK	1	Unmodified	792.47454	0.47454032	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.43	0.495		4	3							2	2	1	2	48.464	47.414	2	0.032748	40730	160511_QHF_FH_JSI12i_2	50.966	9.4637			0.87204	0.95442	12.749	7	0	Median	1.337	1.1338	16.979	2	0	Median	0.81339	0.94343	1.6365	2	0	Median	0.87204	0.88271	NaN	1	0	Median	0.89723	0.95743	10.776	2	0	Median	1210500000	583900000	626610000	239400000	99202000	140190000	293580000	141890000	151690000	176180000	96791000	79386000	501360000	246020000	255340000	34210	3860	32376	210505;210506;210507;210508;210509;210510;210511	284160;284161;284162;284163;284164	284160			5	
LSSLGTGSSSGNGK	1	Unmodified	1250.6103	0.61025853	2867	Q56P03	EAPP	E2F-associated phosphoprotein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.605	14.175	2	5.3059E-05	11892	160511_QHF_FH_JSI12i_1	75.819	50.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34211	2867	32377	210512	284165	284165			1	
LSSLIILMPHHVEPLER	0	Oxidation (M)	1999.0925	0.092467182	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	3	3	2	73.43	66.846	3;4	1.0987E-11	35062	160513_QHF_FH_JSI9Kac_6	127.3	118.47			1.0022	0.99625	9.5608	11	1	Median	1.1746	1.0193	4.3864	3	0	Plateau	0.82769	0.96069	7.8568	3	0	Median	1.2353	1.1823	16.686	3	1	Plateau	1.0062	1.0598	0.36141	2	0	Median	5373500000	2718400000	2655100000	1447700000	645130000	802570000	1748700000	1014000000	734790000	991920000	459430000	532490000	1185100000	599880000	585270000	34212	1706	32378	210513;210514;210515;210516;210517;210518;210519;210520;210521;210522;210523	284166;284167;284168;284169;284170;284171;284172;284173;284174;284175;284176;284177;284178;284179;284180	284171		1381	14	
LSSLIILMPHHVEPLER	0	Unmodified	1983.0976	0.09755256	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.4			20						14	12	10	7	5	82.179	78.169	2;3;4	1.3808E-83	39978	160513_QHF_FH_JSI10Kac_6	252.14	228.39			2.123	1.8409	27.098	33	14	Linear	1.1724	1.0224	22.93	11	5	Median	0.81665	0.96542	33.061	10	4	Median	1.3403	1.2675	23.966	7	3	Median	1.4745	1.5405	27.409	5	2	Linear	54579000000	24292000000	30288000000	20214000000	9183200000	11031000000	24610000000	11439000000	13171000000	5275800000	1903100000	3372800000	4479500000	1766400000	2713000000	34213	1706	32378	210524;210525;210526;210527;210528;210529;210530;210531;210532;210533;210534;210535;210536;210537;210538;210539;210540;210541;210542;210543;210544;210545;210546;210547;210548;210549;210550;210551;210552;210553;210554;210555;210556;210557	284181;284182;284183;284184;284185;284186;284187;284188;284189;284190;284191;284192;284193;284194;284195;284196;284197;284198;284199;284200;284201;284202;284203;284204;284205;284206;284207;284208;284209;284210;284211;284212;284213;284214;284215;284216;284217;284218;284219;284220;284221;284222;284223;284224;284225;284226;284227;284228;284229;284230;284231	284228			50	
LSSLIILMPHHVEPLERLEK	1	Oxidation (M)	2369.3141	0.31408728	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	1	By MS/MS				16	0									1	1				76.9	68.297	5	8.304E-05	36707	160513_QHF_FH_JSI9Kac_6	76.155	71.502			1.0448	0.91741	NaN	1	0	Median	1.0448	0.91741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79467000	39090000	40378000	79467000	39090000	40378000	0	0	0	0	0	0	0	0	0	34214	1706	32379	210558	284232	284232		1381	1	
LSSLIILMPHHVEPLERLEK	1	Unmodified	2353.3192	0.31917265	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									5	2	3			80.575	73.737	3;4;5	4.9057E-07	40812	160513_QHF_FH_JSI10Kac_6	89.028	80.237			1.0841	1.0847	21.79	5	2	Median	1.0958	0.94845	10.179	2	0	Median	1.0841	1.3075	17.555	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2396000000	1213000000	1183000000	661610000	301180000	360420000	1734400000	911860000	822540000	0	0	0	0	0	0	34215	1706	32379	210559;210560;210561;210562;210563	284233;284234;284235;284236;284237	284235			5	
LSSLLEFAQYLLAHSMFSR	0	Unmodified	2212.1351	0.13506028	281	O15360	FANCA	Fanconi anemia group A protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	101.03	92.921	3	9.9957E-45	56026	160513_QHF_FH_JSI10Kac_6	178.77	159.48			0.60584	0.72466	27.075	3	0	Median	1.0604	0.89662	NaN	1	0	Median	0.60584	0.72466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5008	0.52374	NaN	1	0	Median	803630000	423530000	380110000	220690000	95568000	125120000	549950000	304890000	245070000	0	0	0	32989000	23074000	9915600	34216	281	32380	210564;210565;210566	284238;284239;284240	284239			3	
LSSLNLDDHAK	1	Unmodified	1211.6146	0.61461563	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		11.8	5.63		1						3		1		3		40.635	30.582	2;3	0.0055193	17574	160513_QHF_FH_JSI11Kac_5	36.847	27.414			3.3154	3.1617	55.361	3	2	Plateau	2.93	2.4087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9401	1.8559	75.342	2	1	Median	NaN	NaN	NaN	0	0	Median	6957700	2095300	4862300	1816700	515870	1300800	0	0	0	5141000	1579500	3561500	0	0	0	34217	2107	32381	210567;210568;210569;210570	284241;284242;284243;284244	284243			4	
LSSLNQDNSLAEDNLK	1	Unmodified	1759.8588	0.85882166	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	50.275	49.512	2	7.5882E-08	44949	160511_QHF_FH_JSI12i_1	136.99	108.03			1.2758	1.2964	26.024	3	3	Plateau	1.0035	0.82085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3106	1.2964	NaN	1	1	Median	1.2267	1.2799	NaN	1	1	Median	66039000	24659000	41379000	15180000	6918100	8261700	0	0	0	27041000	10212000	16829000	23818000	7528900	16289000	34218	2691	32382	210571;210572;210573	284245;284246;284247	284246			3	
LSSLPFQK	1	Unmodified	918.51747	0.51746776	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.64	3	4	4				1	3		3	3	5	4	51.743	48.27	2	0.0017526	42343	160511_QHF_FH_JSI9i_2	85.272	39.251			0.99474	1.0546	5.6094	15	0	Median	1.265	1.0564	2.3684	3	0	Median	0.8473	1.0326	3.8258	3	0	Plateau	1.0024	1.0242	8.3197	5	0	Median	0.94538	1.0504	5.4651	4	0	Median	5989900000	2793900000	3195900000	930460000	382720000	547740000	1274700000	599210000	675470000	2030600000	978960000	1051700000	1754100000	833050000	921070000	34219	1974	32383	210574;210575;210576;210577;210578;210579;210580;210581;210582;210583;210584;210585;210586;210587;210588	284248;284249;284250;284251;284252;284253;284254;284255;284256;284257;284258;284259;284260;284261;284262;284263;284264;284265;284266;284267;284268	284259			21	
LSSMLGVPAQETAPAK	1	Unmodified	1598.8338	0.83379288	4430	Q9BU02	THTPA	Thiamine-triphosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	55.805	55.144	2	1.4054E-06	49890	160511_QHF_FH_JSI11i_1	88.021	72.755			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9479600	9479600	0	0	0	0	0	0	0	0	0	0	9479600	9479600	0	34220	4430	32384	210589;210590;210591	284269;284270;284271	284269			3	
LSSNAVSQITR	0	Unmodified	1174.6306	0.63060004	4346	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	33.645	33.59	2	0.00050115	29285	160511_QHF_FH_JSI11i_3	85.958	45.957			0.89616	0.87506	17.701	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81348	0.7721	NaN	1	1	Median	0.98724	0.99173	NaN	1	1	Median	116940000	61170000	55775000	0	0	0	0	0	0	56686000	31825000	24861000	60259000	29345000	30913000	34221	4346	32385	210592;210593;210594	284272;284273;284274	284272			3	
LSSPATLNSR	0	Unmodified	1044.5564	0.55637247	47	CON__P00761			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.43	4	7	4			2	3	4	4	6	8	7	7	28.665	23.59	2	7.679E-10	21301	160511_QHF_FH_JSI9i_1	129.63	100.73		+	0.92549	0.96012	12.379	27	8	Median	0.92549	0.86875	7.9276	5	1	Median	0.88654	1.0364	12.457	8	2	Median	1.0893	1.0742	6.8189	7	2	Median	0.9005	0.94788	4.9925	7	3	Median	96397000000	48247000000	48151000000	10775000000	5447500000	5327600000	25219000000	12634000000	12586000000	32251000000	15225000000	17026000000	28152000000	14941000000	13211000000	34222	47	32386	210595;210596;210597;210598;210599;210600;210601;210602;210603;210604;210605;210606;210607;210608;210609;210610;210611;210612;210613;210614;210615;210616;210617;210618;210619;210620;210621;210622	284275;284276;284277;284278;284279;284280;284281;284282;284283;284284;284285;284286;284287;284288;284289;284290;284291;284292;284293;284294;284295;284296;284297;284298;284299;284300;284301;284302;284303;284304;284305;284306;284307;284308;284309;284310;284311;284312;284313	284296			39	
LSSPCIMVVNHDASSIPR	0	Unmodified	1981.9714	0.97136577	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.249	60.249	3	0.00018251	53508	160511_QHF_FH_JSI11i_3	54.637	38.454			0.54758	0.52464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54758	0.52464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30075000	19896000	10179000	0	0	0	0	0	0	30075000	19896000	10179000	0	0	0	34223	2282	32387	210623	284314	284314			1	
LSSPERDVERDVFLYR	0	Unmodified	1980.0065	0.0064889465	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				62.501	60.993	4	0.058259	49975	160511_QHF_FH_JSI9i_3	17.489	7.4316			1.5138	1.2253	NaN	1	0	Median	1.5138	1.2253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25456000	10902000	14554000	25456000	10902000	14554000	0	0	0	0	0	0	0	0	0	34224	178	32388	210624	284315	284315			1	
LSSQEAASSFGDDRLLIEK	1	Unmodified	2065.0328	0.032763277	829	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.119	64.828	3	0.0044657	55970	160511_QHF_FH_JSI12i_3	47.204	32.591			0.45129	0.45385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45129	0.45385	NaN	1	1	Median	62392000	39683000	22709000	0	0	0	0	0	0	0	0	0	62392000	39683000	22709000	34225	829	32389	210625	284316	284316			1	
LSSQIEK	1	Unmodified	803.43888	0.43888309	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		17.118	16.487	2	0.021535	13740	160511_QHF_FH_JSI9i_1	56.51	0			1.4784	1.4315	15.633	3	0	Plateau	1.506	1.3504	NaN	1	0	Median	1.5147	1.8141	NaN	1	0	Median	1.4513	1.4315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15323000000	6613800000	8709500000	6623900000	2418400000	4205500000	1406800000	736170000	670590000	7292600000	3459200000	3833400000	0	0	0	34226	1016	32390	210626;210627;210628	284317;284318;284319	284319			3	
LSSQISAGEEK	1	Unmodified	1147.5721	0.57208211	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	22.695	19.144	2	1.6762E-05	16510	160511_QHF_FH_JSI12i_1	104.79	82.055			0.93059	0.94139	11.429	7	0	Median	1.1528	0.94139	NaN	1	0	Median	0.63987	0.75953	NaN	1	0	Median	0.98346	0.96298	5.9233	3	0	Median	0.80946	0.87378	16.047	2	0	Median	1521700000	872360000	649360000	309400000	149780000	159620000	566450000	389520000	176930000	293580000	147280000	146300000	352300000	185780000	166510000	34227	3323	32391	210629;210630;210631;210632;210633;210634;210635	284320;284321;284322;284323;284324;284325;284326;284327	284322			8	
LSSQITLLEAQNR	0	Unmodified	1471.7995	0.79945628	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	5.66			2					1				2	1	61.689	57.981	2	0.00134	31205	160513_QHF_FH_JSI11Kac_5	80.763	62.899			1.6737	1.5867	47.48	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.0734	55.278	2	2	Median	1.6188	1.712	NaN	1	1	Median	48917000	13989000	34928000	0	0	0	0	0	0	27528000	8502300	19025000	21389000	5486300	15903000	34228	2574	32392	210636;210637;210638	284328;284329;284330	284329			3	
LSSQLILLQAWTSHLWK	1	Unmodified	2023.1255	0.12548187	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	96.144	87.53	2;3	3.1514E-24	49428	160513_QHF_FH_JSI9Kac_6	154.39	130.34			0.79047	0.9948	37.46	5	3	Linear	0.78757	0.66453	NaN	1	0	Median	0.83225	0.9948	NaN	1	0	Median	0.90266	0.84587	NaN	1	1	Median	1.3448	1.4124	36.087	2	2	Median	3779000000	1928600000	1850400000	1092300000	622160000	470090000	674680000	355260000	319410000	1244500000	610920000	633530000	767650000	340270000	427380000	34229	3562	32393	210639;210640;210641;210642;210643	284331;284332;284333;284334;284335;284336;284337	284333			7	
LSSSDEQELR	0	Unmodified	1162.5466	0.54659564	5805				yes	yes	0	0	0	0		By MS/MS			16	0									1		1			70.292	62.688	3	0.058626	34431	160513_QHF_FH_JSI10Kac_6	15.864	4.1332	+		0.6689	0.79003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6689	0.79003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37039000	19666000	17372000	0	0	0	37039000	19666000	17372000	0	0	0	0	0	0	34230	5805	32394	210644	284338	284338			1	
LSSSFSSR	0	Unmodified	869.4243	0.42429566	4957	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.81	3	3	2					1	4	3	3	4	3	19.486	16.185	2	0.026792	9527	160513_QHF_FH_JSI9Kac_5	51.787	0			0.97976	0.96729	18.536	13	0	Median	1.1402	0.95096	9.1911	3	0	Median	0.86001	1.0329	13.58	3	0	Median	0.96825	0.95801	21.172	4	0	Median	1.078	1.095	27.317	3	0	Median	14977000000	7336400000	7640100000	2350200000	1016200000	1334000000	2498300000	1349200000	1149100000	6067800000	3056800000	3011000000	4060200000	1914100000	2146100000	34231	4957	32395	210645;210646;210647;210648;210649;210650;210651;210652;210653;210654;210655;210656;210657	284339;284340;284341;284342;284343;284344	284340			6	
LSSSIIHEIDSILGNKPYSK	2	Unmodified	2200.1739	0.17394821	2384	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			100.74	100.57	4	0.00012616	83211	160511_QHF_FH_JSI10i_3	62.362	53.762			0.75294	0.88578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75294	0.88578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17517000	11110000	6406800	0	0	0	17517000	11110000	6406800	0	0	0	0	0	0	34232	2384	32396	210658	284345	284345			1	
LSSSLAAMLIGILHMR	0	Unmodified	1711.9477	0.9477172	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	98.144	89.575	3	6.1756E-24	53729	160513_QHF_FH_JSI10Kac_6	148.72	130.63			1.0532	0.98757	18.49	5	2	Median	1.0464	0.90461	5.7773	2	2	Median	0.82617	0.98757	NaN	1	0	Median	1.0532	0.99079	NaN	1	0	Median	1.3322	1.4055	NaN	1	0	Median	1802900000	907870000	895070000	726320000	373620000	352700000	599090000	322030000	277070000	349700000	163460000	186240000	127840000	48768000	79069000	34233	5106	32397	210659;210660;210661;210662;210663	284346;284347;284348;284349;284350;284351	284351			6	
LSSSLAAMLIGILHMR	0	Oxidation (M)	1727.9426	0.94263182	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			96.102	90.381	3	0.00027063	52279	160513_QHF_FH_JSI10Kac_6	85.006	72.215			0.67643	0.77843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67643	0.77843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110310000	58307000	51998000	0	0	0	110310000	58307000	51998000	0	0	0	0	0	0	34234	5106	32397	210664	284352	284352		2581	1	
LSSTNFAMK	1	Oxidation (M)	1013.4852	0.48518136	4043	Q96EF9;Q96K31	ZHX1-C8orf76;C8orf76	Zinc fingers and homeoboxes protein 1, isoform 2;Uncharacterized protein C8orf76	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	28.564	27.842	2	0.0050556	24288	160511_QHF_FH_JSI9i_1	60.682	25.901			0.92802	0.93076	17.418	6	0	Median	0.91977	0.77186	8.8191	2	0	Median	0.82918	1.0192	17.068	2	0	Median	1.1467	1.0981	NaN	1	0	Median	0.93364	0.95901	NaN	1	0	Median	1309200000	666810000	642360000	414320000	204930000	209390000	396240000	210500000	185740000	310320000	154460000	155860000	188300000	96916000	91380000	34235	4043	32398	210665;210666;210667;210668;210669;210670	284353;284354;284355	284353		2381	3	
LSSTQQSLAEK	1	Unmodified	1190.6143	0.61428128	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	17.91	17.231	2	0.00069372	14836	160511_QHF_FH_JSI12i_1	82.261	33.699			1.6625	1.8147	52.876	3	3	Plateau	0.82989	0.68113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3103	1.3732	48.104	2	2	Median	238010000	113300000	124720000	80693000	38783000	41910000	0	0	0	0	0	0	157320000	74517000	82805000	34236	3395	32399	210671;210672;210673	284356;284357;284358	284357			3	
LSSTWEGIQAGK	1	Unmodified	1275.6459	0.64591575	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.32	3	4	2				3	4		2	4	5	5	51.005	45.973	2	7.0008E-23	39700	160511_QHF_FH_JSI11i_2	177.06	141.12			1.0014	1.1176	16.763	16	1	Median	1.1612	0.97147	15.007	2	0	Median	0.94485	1.1322	13.253	4	1	Median	0.99027	0.97492	17.74	5	0	Median	1.0127	1.1183	18.167	5	0	Median	5947100000	3081400000	2865700000	662240000	295210000	367030000	1572700000	870490000	702210000	2171000000	1114100000	1056900000	1541200000	801610000	739580000	34237	1471	32400	210674;210675;210676;210677;210678;210679;210680;210681;210682;210683;210684;210685;210686;210687;210688;210689	284359;284360;284361;284362;284363;284364;284365;284366;284367;284368;284369;284370;284371;284372;284373;284374;284375;284376;284377;284378;284379;284380;284381;284382;284383	284375			25	
LSSVVTQHDSK	1	Unmodified	1199.6146	0.61461563	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.32	6.04	1	8	4					5	1	3	3	8	5	14.29	11.452	2;3	2.6086E-09	9705	160511_QHF_FH_JSI11i_3	128.81	99.724			1.2213	1.1909	32.151	18	4	Median	1.5443	1.3329	12.33	3	0	Plateau	1.3364	1.6514	22.924	3	0	Plateau	1.2219	1.2098	35.594	7	2	Median	1.1223	1.1434	44.905	5	2	Median	3617900000	1409100000	2208800000	402260000	143350000	258910000	435210000	196380000	238830000	1383600000	629050000	754550000	1396800000	440280000	956530000	34238	1823	32401	210690;210691;210692;210693;210694;210695;210696;210697;210698;210699;210700;210701;210702;210703;210704;210705;210706;210707;210708	284384;284385;284386;284387;284388;284389;284390;284391;284392;284393;284394;284395;284396;284397;284398;284399;284400;284401;284402;284403;284404;284405;284406;284407;284408;284409	284386			26	
LSSVVTQHDSKK	2	Unmodified	1327.7096	0.70957864	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	3.24			14						1	4	4	4	3	9.7352	8.926	2;3;4	3.256E-06	6714	160511_QHF_FH_JSI11i_3	115.57	98.632			1.0226	0.93005	21.937	14	4	Median	1.2304	0.98815	16.335	4	0	Median	0.65624	0.75757	29.519	4	2	Median	1.0378	0.98287	20.111	4	2	Median	1.0418	1.0551	17.78	2	0	Median	1665900000	827230000	838630000	445280000	178350000	266930000	510730000	294590000	216140000	437230000	213210000	224020000	272620000	141080000	131540000	34239	1823	32402	210709;210710;210711;210712;210713;210714;210715;210716;210717;210718;210719;210720;210721;210722;210723	284410;284411;284412;284413;284414;284415;284416;284417;284418;284419;284420;284421;284422;284423;284424;284425;284426;284427;284428;284429;284430;284431	284410			21	
LSSVVTQHDSKK	2	Acetyl (K)	1369.7201	0.72014333	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.718							3	7	5	2	5	3	5	25.835	17.03	2;3	0.0017964	10511	160513_QHF_FH_JSI9Kac_5	81.865	54.75			0.76167	0.87568	129.02	14	4	Median	0.39006	0.3501	NaN	1	1	Median	0.75005	0.89999	7.219	5	0	Median	0.72223	0.7105	97.321	3	1	Median	0.81695	0.89377	198.66	5	2	Median	281430000	165460000	115970000	5818200	5158600	659550	99563000	56330000	43232000	99332000	62681000	36651000	76718000	41290000	35428000	34240	1823	32402	210724;210725;210726;210727;210728;210729;210730;210731;210732;210733;210734;210735;210736;210737;210738	284432;284433;284434;284435;284436;284437;284438;284439;284440;284441;284442	284432	1840		11	
LSSWDQAETPGHTPSLR	0	Unmodified	1880.9017	0.90168952	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	47.748	47.111	2;3	2.0838E-17	41547	160511_QHF_FH_JSI11i_3	168.91	168.91			1.0251	1.0441	13.199	5	2	Median	NaN	NaN	NaN	0	0	Median	0.95801	1.1736	7.7979	2	1	Median	1.0664	1.0076	5.0257	2	1	Median	0.86561	0.87489	NaN	1	0	Median	630030000	299500000	330530000	10601000	0	10601000	99057000	50024000	49032000	355480000	157780000	197700000	164890000	91700000	73193000	34241	542	32403	210739;210740;210741;210742;210743;210744	284443;284444;284445;284446;284447;284448	284443			6	
LSSWHTDVPPISSTLVPSK	1	Unmodified	2050.0735	0.073505879	3413	Q8IW35	CEP97	Centrosomal protein of 97 kDa	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.392	75.392	3	0.021911	67292	160511_QHF_FH_JSI11i_3	29.84	23.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34242	3413	32404	210745	284449	284449			1	
LSSYEEMLQSVK	1	Unmodified	1412.6857	0.68573166	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	67.519	66.421	2	0.0026313	57203	160511_QHF_FH_JSI12i_2	69.672	53.001			1.1051	1.0578	23.296	2	2	Median	1.4559	1.2472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83882	0.89711	NaN	1	1	Median	45043000	22931000	22112000	20742000	8881500	11860000	0	0	0	0	0	0	24301000	14050000	10252000	34243	5024	32405	210746;210747;210748	284450;284451;284452	284450			3	
LSTACPGR	0	Unmodified	860.41744	0.41743614	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	10.838	10.393	2	0.021969	7911	160511_QHF_FH_JSI11i_2	44.395	24.548			1.1493	1.218	41.12	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90096	0.91069	NaN	1	0	Median	1.466	1.629	NaN	1	0	Median	261910000	139670000	122240000	0	0	0	0	0	0	172710000	98636000	74072000	89198000	41034000	48164000	34244	1844	32406	210749;210750	284453;284454	284454			2	
LSTALAR	0	Unmodified	730.43374	0.43373813	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	20.035	19.399	2	0.034652	15775	160511_QHF_FH_JSI12i_3	50.025	14.824			0.8189	0.8844	22.324	5	0	Median	0.85005	0.72555	NaN	1	0	Median	0.73717	0.8844	NaN	1	0	Median	0.59227	0.5996	NaN	1	0	Median	0.93578	0.98733	10.823	2	0	Median	940110000	525590000	414520000	155350000	78973000	76377000	149690000	92422000	57267000	176360000	107190000	69166000	458720000	247000000	211710000	34245	1411	32407	210751;210752;210753;210754;210755	284455;284456;284457	284457			3	
LSTANTYSYHK	1	Unmodified	1283.6146	0.61461563	4231	Q96S16	JMJD8	JmjC domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	19.346	19.359	2;3	1.0601E-05	15606	160511_QHF_FH_JSI12i_3	81.92	74.375			0.94017	0.95181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94017	0.95181	NaN	1	0	Median	95835000	49100000	46735000	0	0	0	0	0	0	0	0	0	95835000	49100000	46735000	34246	4231	32408	210756;210757;210758;210759	284458;284459;284460;284461;284462	284460			5	
LSTDDLNSLIAHAHR	0	Unmodified	1661.8485	0.84853174	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	3	2	67.298	66.658	3;4	2.1386E-05	57667	160511_QHF_FH_JSI12i_3	105.14	87.633			1.0438	1.0678	25.882	9	3	Median	1.2662	1.0678	NaN	1	0	Median	0.91379	1.1168	26.205	3	1	Plateau	1.0438	1.0097	40.912	3	1	Median	1.0449	1.0663	9.9056	2	1	Median	1604300000	784820000	819520000	64795000	33957000	30838000	188270000	90182000	98089000	511460000	258600000	252870000	839810000	402090000	437720000	34247	2780	32409	210760;210761;210762;210763;210764;210765;210766;210767;210768	284463;284464;284465;284466;284467;284468;284469;284470;284471;284472;284473;284474;284475;284476;284477;284478;284479;284480	284479			18	
LSTDHIPILYR	0	Unmodified	1326.7296	0.7295858	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.54		4	9						2	4	3	3	5	62.105	60.66	2;3	1.8444E-05	50828	160511_QHF_FH_JSI10i_3	90.827	81.928			1.0717	1.0121	19.341	13	3	Median	1.3643	1.1229	16.809	2	0	Median	0.86294	1.0092	12.418	3	0	Median	1.0741	1.0121	6.4808	3	0	Median	1.0717	1.0691	28.598	5	3	Median	2778300000	1369100000	1409200000	208860000	91048000	117810000	429760000	226570000	203200000	795850000	381030000	414820000	1343800000	670470000	673360000	34248	2242	32410	210769;210770;210771;210772;210773;210774;210775;210776;210777;210778;210779;210780;210781;210782;210783	284481;284482;284483;284484;284485;284486;284487;284488;284489;284490;284491;284492;284493;284494;284495;284496;284497;284498;284499;284500;284501;284502;284503;284504;284505;284506;284507	284489			27	
LSTFGNAGSSHLDYPK	1	Unmodified	1692.8107	0.81074925	435	O60671	RAD1	Cell cycle checkpoint protein RAD1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	45.866	45.745	2;3	1.7776E-11	39064	160511_QHF_FH_JSI12i_3	111.79	95.903			1.2242	1.2186	32.287	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0116	0.96983	NaN	1	1	Median	1.4814	1.5311	NaN	1	1	Median	204230000	87765000	116470000	0	0	0	0	0	0	178950000	78425000	100530000	25279000	9340200	15938000	34249	435	32411	210784;210785;210786	284508;284509;284510	284510			3	
LSTGVFRPQLDEPIPLYEAK	1	Unmodified	2272.2103	0.21033371	735	O95825	CRYZL1	Quinone oxidoreductase-like protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		87.389	86.629	3	9.6074E-05	77227	160511_QHF_FH_JSI11i_3	56.9	39.531			0.83307	0.82144	8.5939	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.78648	0.90391	9.3106	2	2	Median	0.89342	0.82144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162970000	88260000	74709000	0	0	0	93550000	58210000	35340000	69419000	30050000	39368000	0	0	0	34250	735	32412	210787;210788;210789	284511;284512;284513	284511			3	
LSTHKEVK	2	Acetyl (K)	982.54475	0.54474515	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		16.784	7.5581	3	0.0061422	6307	160513_QHF_FH_JSI11Kac_6	54.416	24.943			0.32874	0.31733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32874	0.31733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9162500	7242700	1919800	0	0	0	0	0	0	9162500	7242700	1919800	0	0	0	34251	2997	32413	210790	284514	284514	2735		1	
LSTIALALGVER	0	Unmodified	1241.7343	0.73433683	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.923	77.164	2	9.988E-16	64783	160511_QHF_FH_JSI10i_3	156.12	116.07			0.92818	0.89221	6.762	4	0	Median	1.2042	0.97956	NaN	1	0	Median	0.72022	0.8357	NaN	1	0	Median	0.98988	0.91141	NaN	1	0	Median	0.87032	0.87341	NaN	1	0	Median	576190000	273890000	302290000	122530000	51484000	71042000	123480000	68787000	54694000	137310000	60040000	77273000	192870000	93582000	99284000	34252	1345;1346	32414	210791;210792;210793;210794	284515;284516;284517;284518;284519;284520;284521	284517			7	
LSTLIEFLLHR	0	Unmodified	1340.7816	0.78162138	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	1	2	81.68	73.591	3	1.215E-11	48211	160513_QHF_FH_JSI10Kac_6	133.07	112.77			0.84055	0.99603	85.138	7	3	Median	0.82855	0.71356	134.84	2	1	Median	0.84055	1.0067	106.59	3	2	Median	1.0663	0.99603	NaN	1	0	Median	0.62867	0.66464	NaN	1	0	Median	1302200000	685850000	616400000	283750000	109200000	174550000	545110000	307560000	237550000	185820000	87013000	98808000	287560000	182080000	105480000	34253	400	32415	210795;210796;210797;210798;210799;210800;210801;210802	284522;284523;284524;284525;284526	284526			5	
LSTLVETTLK	1	Unmodified	1103.6438	0.64379049	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.4	53.439	2	0.00034433	45875	160511_QHF_FH_JSI12i_2	90.15	52.592			1.5961	1.6281	58.762	4	3	Median	1.6817	1.4575	NaN	1	1	Median	1.5149	1.8361	NaN	1	0	Median	1.814	1.8187	NaN	1	1	Median	0.47305	0.53354	NaN	1	1	Median	485370000	209290000	276080000	106330000	48749000	57585000	121310000	47194000	74112000	143370000	51232000	92136000	114360000	62117000	52248000	34254	1793	32416	210803;210804;210805;210806	284527;284528;284529;284530	284527			4	
LSTMETGTGLIR	0	Unmodified	1277.6649	0.66493664	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.431	50.453	2	0.00067957	44222	160511_QHF_FH_JSI9i_2	68.626	38.959			0.75624	0.78271	6.0647	4	0	Linear	0.99195	0.86766	NaN	1	0	Median	0.72673	0.88017	NaN	1	0	Median	0.76306	0.77184	NaN	1	0	Median	0.74948	0.86355	NaN	1	0	Median	503670000	280170000	223500000	104310000	51575000	52739000	90544000	48363000	42181000	175130000	94870000	80262000	133680000	85363000	48320000	34255	1316	32417	210807;210808;210809;210810	284531;284532;284533;284534	284532			4	
LSTPDVVSPFGTPFGSSVMNR	0	Unmodified	2194.0729	0.072853952	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	3	4	1	97.24	97.123	2;3	1.9215E-07	85248	160511_QHF_FH_JSI9i_2	124.3	102.74			1.026	1.017	20.933	6	4	Median	1.0588	0.91583	NaN	1	0	Median	0.81245	0.99342	22.553	2	2	Median	1.0726	1.017	14.822	2	1	Median	1.381	1.4838	NaN	1	1	Median	91014000	42230000	48784000	13885000	7000400	6884600	31224000	15113000	16111000	26129000	13568000	12562000	19776000	6549300	13227000	34256	4425	32418	210811;210812;210813;210814;210815;210816;210817;210818;210819	284535;284536;284537;284538;284539;284540;284541;284542;284543;284544;284545	284539			11	
LSTPGAR	0	Unmodified	700.38679	0.38678794	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	10.827	10.628	2	0.023698	8212	160511_QHF_FH_JSI11i_3	55.441	32.422			1.055	1.0415	25.833	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.57759	0.66553	NaN	1	0	Median	1.0461	0.98856	NaN	1	0	Median	1.055	1.0815	NaN	1	0	Median	608760000	298860000	309890000	0	0	0	24044000	14064000	9980300	281810000	141050000	140760000	302900000	143740000	159160000	34257	2545	32419	210820;210821;210822	284546;284547;284548	284547			3	
LSTPSSVTK	1	Unmodified	918.50221	0.50221163	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	20.4	19.852	2	0.00067613	16872	160511_QHF_FH_JSI11i_1	76.221	41.397			1.2424	1.2408	21.592	6	0	Median	1.5895	1.317	27.867	2	0	Median	1.1035	1.2849	NaN	1	0	Median	1.3778	1.3554	17.427	2	0	Median	0.87915	0.90275	NaN	1	0	Median	399290000	185350000	213940000	105480000	44260000	61219000	50710000	23572000	27139000	142170000	60419000	81747000	100940000	57103000	43834000	34258	3250	32420	210823;210824;210825;210826;210827;210828	284549;284550;284551;284552;284553	284549			5	
LSTPSSVTKPANSVFTTK	2	Unmodified	1863.9942	0.99419293	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		50.009	48.954	3	0.0023958	40921	160511_QHF_FH_JSI10i_3	44.662	34.874			0.88122	0.8958	13.092	3	0	Median	1.1073	0.8958	NaN	1	0	Median	0.88122	1.0138	NaN	1	0	Median	0.82832	0.78037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174920000	88078000	86838000	63990000	30638000	33353000	51295000	24270000	27024000	59631000	33170000	26461000	0	0	0	34259	3250	32421	210829;210830;210831	284554;284555	284555			2	
LSTPSTGGSVDIISVK	1	Unmodified	1559.8407	0.8406524	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	64.148	63.462	2	0.0041187	57793	160511_QHF_FH_JSI12i_1	62.088	45.456			0.85382	0.7436	34.573	3	1	Plateau	1.2684	1.0204	NaN	1	0	Median	0.57476	0.66629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3324	1.3213	NaN	1	1	Median	62327000	33181000	29146000	20147000	9556800	10590000	27529000	17672000	9856600	0	0	0	14651000	5952000	8698700	34260	2311	32422	210832;210833;210834	284556;284557;284558	284556			3	
LSTQSNSNNIEPAR	0	Unmodified	1529.7434	0.74339797	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	28.365	20.22	2	1.4495E-16	12005	160513_QHF_FH_JSI10Kac_4	140.14	106.92			0.94797	1.0103	11.578	6	0	Median	NaN	NaN	NaN	0	0	Median	0.83901	0.99252	4.3513	2	0	Median	1.1823	1.146	20.121	2	0	Median	0.94797	1.0139	2.333	2	0	Median	62507000	32240000	30268000	0	0	0	22103000	11456000	10646000	16841000	8365500	8475700	23563000	12418000	11145000	34261	2554	32423	210835;210836;210837;210838;210839;210840	284559;284560;284561;284562;284563	284559			5	
LSTSFVLETFIHSK	1	Unmodified	1607.8559	0.85590853	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	93.708	93.238	3	0.011552	80487	160511_QHF_FH_JSI12i_3	39.629	26.796			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34262	3198	32424	210841;210842	284564;284565	284565			2	
LSTSSYSQVR	0	Unmodified	1126.5619	0.56185177	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.289	22.944	2	0.025656	19078	160511_QHF_FH_JSI11i_2	48.283	30.897			2.323	2.3231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.323	2.3231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28756000	7656500	21099000	0	0	0	0	0	0	28756000	7656500	21099000	0	0	0	34263	2588	32425	210843	284566	284566			1	
LSTVASTDILATVLEEMPPFPER	0	Unmodified	2515.288	0.28799169	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.94	102.95	3	1.5957E-10	89699	160511_QHF_FH_JSI12i_3	95.48	85.894			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34264	635	32426	210844	284567	284567			1	
LSTVDMTGIPTLDNLQK	1	Unmodified	1844.9554	0.95536458	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	88.047	87.603	2	1.6829E-06	79641	160511_QHF_FH_JSI10i_1	142.91	120.22			0.82476	0.85472	11.754	4	0	Median	1.0854	0.91614	NaN	1	0	Median	0.80248	0.89982	NaN	1	0	Median	0.84765	0.81188	NaN	1	0	Median	0.69523	0.70932	NaN	1	0	Median	121800000	66604000	55195000	30634000	14882000	15753000	32853000	17024000	15829000	25611000	14178000	11434000	32701000	20521000	12180000	34265	3764	32427	210845;210846;210847;210848	284568;284569	284569			2	
LSTVGWASQK	1	Unmodified	1075.5662	0.56620887	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	38.628	37.579	2	0.00029234	32909	160511_QHF_FH_JSI11i_3	88.496	55.1			1.1492	1.1575	38.578	3	0	Plateau	0.67949	0.55254	NaN	1	0	Median	0.86052	0.96779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1492	1.1575	NaN	1	0	Median	222460000	115170000	107290000	18521000	11680000	6840800	31121000	15769000	15352000	0	0	0	172820000	87720000	85095000	34266	5154	32428	210849;210850;210851;210852;210853	284570;284571;284572;284573;284574	284570			5	
LSTVVDADEIIVLDQGK	1	Unmodified	1813.9673	0.96730947	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	88.527	88.05	3	0.0013516	80180	160511_QHF_FH_JSI12i_1	57.148	47.742			0.42525	0.41867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42525	0.41867	NaN	1	1	Median	11237000	7807700	3429200	0	0	0	0	0	0	0	0	0	11237000	7807700	3429200	34267	464	32429	210854	284575	284575			1	
LSVAAQEAAR	0	Unmodified	1014.5458	0.54580778	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	22.209	21.375	2	0.046372	17673	160511_QHF_FH_JSI12i_2	36.381	17.403			0.81337	0.75708	30.011	4	0	Median	0.96036	0.82716	NaN	1	0	Median	0.45303	0.54497	NaN	1	0	Median	0.68888	0.69294	NaN	1	0	Median	1.0225	1.1111	NaN	1	0	Median	333870000	179340000	154530000	77333000	34461000	42872000	74092000	42707000	31386000	99155000	54622000	44533000	83287000	47550000	35737000	34268	2636	32430	210855;210856;210857;210858	284576;284577	284576			2	
LSVACFYGGTPYGGQFER	0	Unmodified	2007.9149	0.91489675	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	79.968	79.285	2	5.1207E-31	68915	160511_QHF_FH_JSI12i_3	190.27	158.21			1.119	1.1118	19.442	6	2	Median	1.0432	0.91109	NaN	1	1	Median	1.2004	1.3687	NaN	1	0	Median	0.9891	0.94952	6.0968	2	1	Median	1.2468	1.3004	5.9508	2	0	Median	225080000	120830000	104250000	18935000	10023000	8912400	14249000	5812700	8435900	118350000	61897000	56452000	73544000	43097000	30447000	34269	4940	32431	210859;210860;210861;210862;210863;210864;210865	284578;284579;284580;284581;284582;284583;284584;284585;284586;284587;284588;284589	284589			12	
LSVADSQAEAK	1	Unmodified	1117.5615	0.56151742	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	23.26	21.286	2	4.4657E-06	18647	160511_QHF_FH_JSI12i_1	111.27	83.057			1.1262	1.0258	24.784	6	2	Median	1.3796	1.1398	37.959	2	2	Median	0.69693	0.81508	NaN	1	0	Median	1.2592	1.2381	6.136	2	0	Median	0.84866	0.88765	NaN	1	0	Median	1041600000	534370000	507180000	352640000	148160000	204480000	212110000	118770000	93339000	236830000	119880000	116950000	239980000	147560000	92415000	34270	3860	32432	210866;210867;210868;210869;210870;210871	284590;284591;284592;284593;284594;284595;284596;284597	284591			8	
LSVDYGK	1	Unmodified	780.40177	0.4017693	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.27	6	4			1	2	1			2	4	6	2	29.261	26.741	2	0.012734	23930	160511_QHF_FH_JSI12i_1	68.915	17.949			0.77432	0.85155	53.545	13	5	Median	1.3287	1.1436	30.241	2	0	Median	0.79752	0.95754	50.644	4	2	Median	0.70362	0.7021	73.188	5	3	Median	1.0479	1.1157	38.214	2	0	Median	47121000000	24640000000	22481000000	7919300000	3760600000	4158600000	16241000000	8798900000	7442600000	13545000000	7581800000	5963500000	9415100000	4498600000	4916400000	34271	2073;2074;4359	32433	210872;210873;210874;210875;210876;210877;210878;210879;210880;210881;210882;210883;210884;210885	284598;284599;284600;284601;284602;284603;284604;284605;284606;284607;284608;284609;284610;284611;284612;284613;284614;284615;284616	284603			19	
LSVDYGKK	2	Unmodified	908.49673	0.49673232	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.24	4.72	3	6	9					1	2	7	5	4	5	21.035	19.219	2;3	0.0013741	15611	160511_QHF_FH_JSI12i_3	98.299	79.569			0.94742	0.89365	93.301	21	6	Median	1.0091	0.81856	57.974	7	2	Median	1.0181	1.2198	32.834	5	1	Median	0.91468	0.87484	151.32	4	2	Median	0.69523	0.76658	127.76	5	1	Median	15541000000	7954200000	7586800000	2459800000	1133700000	1326100000	2738000000	1366200000	1371800000	2579800000	1340700000	1239200000	7763300000	4113600000	3649700000	34272	2073;2074;4359	32434	210886;210887;210888;210889;210890;210891;210892;210893;210894;210895;210896;210897;210898;210899;210900;210901;210902;210903;210904;210905;210906	284617;284618;284619;284620;284621;284622;284623;284624;284625;284626;284627;284628;284629;284630;284631;284632;284633;284634;284635;284636;284637;284638;284639;284640;284641;284642;284643;284644;284645;284646;284647;284648;284649	284648			33	
LSVEADINGLRR	0	Unmodified	1341.7365	0.7364621	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	no	no	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			52.08	50.502	3	0.0019677	42226	160511_QHF_FH_JSI10i_3	50.354	34.814		+	1.1297	1.129	9.4447	2	0	Median	1.4623	1.2069	NaN	1	0	Median	0.87265	1.056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117310000	63784000	53523000	28562000	13620000	14942000	88744000	50164000	38580000	0	0	0	0	0	0	34273	65	32435	210907;210908	284650;284651	284651			2	
LSVEDVLTR	0	Unmodified	1030.5659	0.56587452	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.014	24.476	2	0.049218	21657	160511_QHF_FH_JSI12i_1	44.395	3.3701			2.0635	2.1583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0635	2.1583	NaN	1	1	Median	48618000	13950000	34668000	0	0	0	0	0	0	0	0	0	48618000	13950000	34668000	34274	4818	32436	210909	284652	284652			1	
LSVEEFFMDLHNFR	0	Unmodified	1782.8399	0.83994089	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.091	86.648	3	2.1658E-11	47170	160513_QHF_FH_JSI12Kac_6	119.32	108.68			1.1917	1.2411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1917	1.2411	NaN	1	0	Median	112270000	56966000	55306000	0	0	0	0	0	0	0	0	0	112270000	56966000	55306000	34275	432	32437	210910	284653;284654	284654			2	
LSVEESEAAGDGVDTK	1	Unmodified	1605.737	0.73697519	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	1	2	3	37.903	37.258	2;3	5.5957E-30	33562	160511_QHF_FH_JSI11i_1	230.06	206.83			1.1366	1.1647	23.628	8	2	Median	0.95524	0.77507	1.4285	2	0	Median	0.84555	1.01	NaN	1	0	Median	1.2315	1.1946	2.1394	2	0	Median	1.1836	1.2402	14.734	3	2	Median	1166900000	540710000	626140000	165040000	55301000	109740000	222500000	106390000	116110000	301420000	131810000	169610000	477890000	247210000	230680000	34276	1649	32438	210911;210912;210913;210914;210915;210916;210917;210918;210919	284655;284656;284657;284658;284659;284660;284661;284662;284663;284664;284665	284656			10	
LSVEGFAVDK	1	Unmodified	1063.555	0.55497548	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	62.251	60.309	2	2.5173E-07	52176	160511_QHF_FH_JSI11i_2	114.5	65.078			1.0183	0.99758	12.499	8	0	Median	1.0631	0.88722	5.5567	2	0	Median	0.81305	0.99183	17.155	3	0	Median	1.0539	1.0449	5.7376	2	0	Median	1.0625	1.1141	NaN	1	0	Median	1617100000	806320000	810800000	322380000	161890000	160500000	508650000	272170000	236480000	639700000	297720000	341980000	146390000	74548000	71839000	34277	1862	32439	210920;210921;210922;210923;210924;210925;210926;210927;210928	284666;284667;284668;284669;284670;284671;284672;284673;284674;284675;284676;284677;284678	284677			13	
LSVFSTVDAPVAPSDK	1	Unmodified	1631.8407	0.8406524	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	72.106	71.645	2	2.5465E-05	65268	160511_QHF_FH_JSI12i_1	113.24	95.376			0.91642	0.913	58.745	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62351	0.60265	NaN	1	1	Median	1.3469	1.3832	NaN	1	1	Median	38087000	21187000	16900000	0	0	0	0	0	0	19145000	14138000	5007300	18942000	7049900	11892000	34278	2900	32440	210929;210930	284679;284680	284680			2	
LSVHALSR	0	Unmodified	881.5083	0.50830006	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			24.6	23.302	3	0.043398	19220	160511_QHF_FH_JSI10i_3	20.141	7.351			1.3816	1.3597	13.061	2	0	Median	1.5059	1.2397	NaN	1	0	Median	1.2675	1.4912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40339000	19820000	20519000	22840000	11250000	11590000	17499000	8569600	8929500	0	0	0	0	0	0	34279	486	32441	210931;210932	284681;284682	284681			2	
LSVHFHPSVALFAK	1	Unmodified	1551.8562	0.8561833	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	72.87	72.045	3;4	0.00024814	60763	160511_QHF_FH_JSI9i_3	65.563	35.504			1.0294	0.92043	22.11	6	3	Median	1.099	0.92043	0.91744	2	0	Median	0.96782	1.0772	NaN	1	0	Median	0.8575	0.79587	NaN	1	1	Median	0.94509	0.9394	44.508	2	2	Median	175580000	84375000	91208000	29264000	9014900	20249000	20932000	11242000	9690400	27648000	13732000	13915000	97740000	50386000	47353000	34280	2213	32442	210933;210934;210935;210936;210937;210938	284683;284684;284685;284686;284687;284688;284689;284690;284691	284688			9	
LSVILGLLKPDLYK	2	Unmodified	1570.9698	0.96981608	3080	Q6NXR4	TTI2	TELO2-interacting protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			8.2	6.37			3						2	2	3			96.381	93.393	3	1.0425E-07	83495	160511_QHF_FH_JSI10i_3	92.063	64.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34281	3080	32443	210939;210940;210941;210942;210943	284692;284693;284694;284695;284696	284693			5	
LSVISVEDPPQR	0	Unmodified	1338.7143	0.71432967	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.39	6	5	1				2			3	4	4	3	54.684	52.511	2;3	5.3062E-16	47337	160511_QHF_FH_JSI10i_1	162.36	147.68			1.0185	1.0857	12.45	14	2	Median	1.2833	1.104	17.101	3	1	Plateau	0.858	1.1092	6.8083	4	0	Linear	1.0607	1.0582	17.151	4	1	Median	1.0748	1.1717	3.7699	3	0	Plateau	3623600000	1716100000	1907500000	662930000	297700000	365230000	921410000	471150000	450260000	1155100000	526100000	629040000	884160000	421190000	462960000	34282	1473	32444	210944;210945;210946;210947;210948;210949;210950;210951;210952;210953;210954;210955;210956;210957	284697;284698;284699;284700;284701;284702;284703;284704;284705;284706;284707;284708;284709;284710;284711;284712;284713;284714;284715;284716;284717	284707			21	
LSVLDLVVALAPCADEAAISK	1	Unmodified	2154.1606	0.16060633	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.39	103.39	3	2.4667E-07	90136	160511_QHF_FH_JSI12i_3	84.166	74.635			0.77286	0.7555	57.555	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52441	0.50291	NaN	1	0	Median	1.139	1.135	NaN	1	0	Median	38269000	20216000	18053000	0	0	0	0	0	0	10246000	6269900	3976500	28023000	13946000	14077000	34283	2904	32445	210958;210959	284718;284719;284720	284719			3	
LSVLGAITSVQQR	0	Unmodified	1370.7882	0.78816332	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.8	5.59		1	2					1	9	4	4	4	1	79.546	72.664	2;3	4.1819E-09	39972	160513_QHF_FH_JSI10Kac_6	87.216	73.203			0.88949	0.85743	24.643	13	4	Median	1.0826	0.90345	14.342	4	0	Median	0.75583	0.89902	21.179	4	0	Median	0.62312	0.61143	18.968	4	4	Linear	1.4795	1.6419	NaN	1	0	Median	1456000000	789280000	666740000	298010000	153250000	144760000	865400000	466480000	398920000	282320000	166830000	115490000	10293000	2714900	7578200	34284	2010	32446	210960;210961;210962;210963;210964;210965;210966;210967;210968;210969;210970;210971;210972	284721;284722;284723;284724;284725;284726;284727;284728;284729;284730;284731;284732	284732			12	
LSVLHIHGVYTNPSGIVLHPAGYQNVLR	0	Unmodified	3053.6563	0.65630829	4340	Q9BPY3	FAM118B	Protein FAM118B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.454	73.813	5	4.058E-06	40399	160513_QHF_FH_JSI10Kac_6	73.655	62.343			1.1918	1.4153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1918	1.4153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	333070000	151080000	181990000	0	0	0	333070000	151080000	181990000	0	0	0	0	0	0	34285	4340	32447	210973	284733	284733			1	
LSVLIHNSDEHK	1	Unmodified	1390.7205	0.72047768	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	2	3	3	1	27.049	24.684	3;4	0.00010599	19947	160511_QHF_FH_JSI12i_3	70.089	66.227			1.082	1.1891	44.214	9	3	Median	1.4377	1.1706	0.29609	2	0	Median	1.0783	1.2873	4.9012	3	0	Plateau	0.57131	0.53294	65.442	3	3	Median	1.2153	1.2373	NaN	1	0	Median	735200000	409560000	325640000	58814000	31528000	27286000	172200000	101390000	70810000	403230000	230150000	173080000	100950000	46485000	54469000	34286	4989	32448	210974;210975;210976;210977;210978;210979;210980;210981;210982	284734;284735;284736;284737;284738;284739;284740;284741;284742	284740			9	
LSVLLLEK	1	Unmodified	913.58482	0.58481905	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	2	3	3	73.857	70.756	2	0.0032057	62004	160511_QHF_FH_JSI12i_3	74.301	50.146			0.95044	0.96316	19.7	11	0	Median	0.95198	0.81922	13.002	3	0	Median	0.81046	0.96602	0.41906	2	0	Median	1.0128	0.99238	27.978	3	0	Plateau	1.079	1.1966	19.32	3	0	Median	441150000	211670000	229480000	92434000	42468000	49966000	62663000	34400000	28263000	137460000	69832000	67624000	148600000	64968000	83628000	34287	2817	32449	210983;210984;210985;210986;210987;210988;210989;210990;210991;210992;210993	284743;284744;284745;284746;284747;284748;284749;284750;284751;284752;284753;284754;284755;284756;284757;284758	284758			16	
LSVNSHFMK	1	Unmodified	1061.5328	0.53280025	174	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.86		4	10						5	4	4	6	5	37.599	34.627	2;3	3.3039E-06	28839	160511_QHF_FH_JSI12i_3	98.048	82.419			0.97611	1.0308	53.673	19	2	Median	1.0662	0.87935	16.467	4	0	Median	0.86965	0.95037	7.1794	4	0	Linear	1.0512	1.0457	74.35	6	1	Median	1.0143	1.06	74.714	5	1	Median	19099000000	8302800000	10796000000	4338500000	1728400000	2610100000	3659100000	1755700000	1903400000	4622800000	2024200000	2598600000	6478700000	2794600000	3684200000	34288	174	32450	210994;210995;210996;210997;210998;210999;211000;211001;211002;211003;211004;211005;211006;211007;211008;211009;211010;211011;211012	284759;284760;284761;284762;284763;284764;284765;284766;284767;284768;284769;284770;284771;284772;284773;284774;284775;284776;284777;284778;284779;284780;284781;284782;284783;284784;284785;284786	284781			28	
LSVNSHFMK	1	Oxidation (M)	1077.5277	0.52771487	174	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	1	5	3	28.238	27.733	2;3	0.0023393	29767	160511_QHF_FH_JSI11i_3	50.978	39.342			1.4436	1.2242	44.009	11	1	Median	1.5413	1.2242	32.357	3	0	Median	0.61679	0.69185	NaN	1	0	Median	1.1311	1.057	34.692	4	1	Median	1.2908	1.3194	52.435	3	0	Median	4072300000	1646800000	2425500000	1427700000	560770000	866880000	105410000	60949000	44456000	872820000	387190000	485630000	1666400000	637870000	1028600000	34289	174	32450	211013;211014;211015;211016;211017;211018;211019;211020;211021;211022;211023;211024	284787;284788;284789;284790;284791;284792;284793;284794;284795;284796;284797	284788		73	10	
LSVNSVTAGDYSR	0	Unmodified	1367.6681	0.66810776	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	45.73	44.788	2	0.00012332	38561	160511_QHF_FH_JSI11i_2	87.363	78.18			0.8447	0.88573	3.546	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90766	0.90822	NaN	1	0	Median	0.78611	0.8638	NaN	1	1	Median	62095000	32600000	29495000	0	0	0	0	0	0	40814000	20722000	20092000	21281000	11877000	9403100	34290	2688	32451	211025;211026	284798;284799	284799			2	
LSVNSVTAGDYSRPLHISTFINELDSGFR	0	Unmodified	3194.5996	0.59964085	2688	Q15631	TSN	Translin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			90.768	83.551	4	8.6947E-07	48154	160513_QHF_FH_JSI10Kac_6	76.164	63.526			1.133	1.1499	16	2	0	Median	1.4844	1.2876	NaN	1	0	Median	0.86476	1.0269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202460000	105440000	97019000	75274000	29906000	45367000	127180000	75531000	51652000	0	0	0	0	0	0	34291	2688	32452	211027;211028	284800;284801	284801			2	
LSVPAALALGSAALGAAFATGLFLGR	0	Unmodified	2414.3686	0.36856569	3346	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	1.65				1					7	1	3	2	2	105.82	98.045	2;3	2.0171E-110	58752	160513_QHF_FH_JSI10Kac_6	298.13	248.2			1.0164	1.0497	7.9047	7	2	Median	1.3556	1.1395	NaN	1	0	Median	0.96876	1.1385	7.8325	3	1	Median	1.0474	1.0057	5.9919	2	1	Median	0.9843	1.0467	NaN	1	0	Median	2397900000	1124800000	1273100000	1014400000	435830000	578520000	1081100000	531790000	549320000	236700000	123000000	113700000	65737000	34133000	31604000	34292	3346	32453	211029;211030;211031;211032;211033;211034;211035;211036	284802;284803;284804;284805;284806;284807;284808;284809;284810;284811;284812;284813;284814;284815	284814			14	
LSVPAALALGSAALGAAFATGLFLGRR	0	Unmodified	2570.4697	0.46967672	3346	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			102.52	95.068	3;4	6.0324E-28	57146	160513_QHF_FH_JSI10Kac_6	120	99.104			1.3651	1.3713	27.004	4	2	Median	1.9691	1.6867	6.0693	2	2	Median	0.90981	1.0754	11.177	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	491980000	210210000	281770000	212000000	59219000	152780000	279980000	150990000	128990000	0	0	0	0	0	0	34293	3346	32454	211037;211038;211039;211040	284816;284817;284818;284819;284820	284819			5	
LSVPASVVSR	0	Unmodified	1013.5869	0.58694431	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		46.447	46.447	2	0.013502	41085	160511_QHF_FH_JSI11i_3	53.775	23.163			0.93805	0.84325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93805	0.84325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34321000	18434000	15887000	0	0	0	0	0	0	34321000	18434000	15887000	0	0	0	34294	3434	32455	211041	284821	284821			1	
LSVPSGFSVTAPEK	1	Unmodified	1417.7453	0.74529545	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	68.215	67.287	2	0.0064515	57850	160511_QHF_FH_JSI12i_2	61.435	37.405			0.69496	0.58726	18.996	3	1	Median	0.69496	0.58726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58758	0.58344	NaN	1	0	Median	0.74697	0.81336	NaN	1	1	Median	81143000	42409000	38734000	29309000	14606000	14703000	0	0	0	29164000	15515000	13648000	22671000	12288000	10382000	34295	820	32456	211042;211043;211044	284822;284823	284822			2	
LSVQGEVSTFTGK	1	Unmodified	1351.6983	0.69834526	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.217	62.571	2	0.002001	56818	160511_QHF_FH_JSI12i_1	58.829	22.511			0.79015	0.80718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79015	0.80718	NaN	1	0	Median	32828000	18598000	14229000	0	0	0	0	0	0	0	0	0	32828000	18598000	14229000	34296	2508	32457	211045	284824;284825	284824			2	
LSVQSNPSPQLR	0	Unmodified	1324.7099	0.709913	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	37.916	37.502	2	1.8141E-05	32656	160511_QHF_FH_JSI9i_2	129.7	82.811			1.7084	1.5814	41.39	4	3	Linear	0.87636	0.74665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76478	0.72864	48.131	2	2	Median	1.3087	1.3561	NaN	1	0	Median	182330000	105400000	76929000	39205000	20706000	18499000	0	0	0	104050000	64762000	39289000	39074000	19933000	19141000	34297	484	32458	211046;211047;211048;211049	284826;284827;284828;284829	284827			4	
LSVQTHSTDDYINANYMPGYHSK	1	Unmodified	2640.1915	0.19146554	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	58.142	57.888	4	0.0023311	49867	160511_QHF_FH_JSI12i_3	37.228	33.633			1.0057	0.97236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0057	0.97236	NaN	1	0	Median	44313000	22916000	21397000	0	0	0	0	0	0	0	0	0	44313000	22916000	21397000	34298	2327	32459	211050	284830	284830			1	
LSVSGRDENSVELTMAEGPYK	1	Oxidation (M)	2297.0845	0.08454085	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	51.507	51.155	3	1.2038E-06	43806	160511_QHF_FH_JSI12i_3	83.776	75.276			0.7442	0.73164	8.7189	4	2	Median	NaN	NaN	NaN	0	0	Median	0.57184	0.70747	NaN	1	1	Median	0.8071	0.75664	NaN	1	0	Median	0.7442	0.76817	13.481	2	1	Median	161330000	92012000	69316000	0	0	0	24634000	18103000	6531200	79435000	45311000	34124000	57258000	28597000	28660000	34299	2569	32460	211051;211052;211053;211054	284831;284832;284833;284834;284835	284834		2013	5	
LSVSGRDENSVELTMAEGPYK	1	Unmodified	2281.0896	0.089626228	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								3	1	1	62.427	61.728	3	2.2445E-10	54710	160511_QHF_FH_JSI10i_2	118.16	108.87			0.84304	1.0074	12.251	5	3	Median	NaN	NaN	NaN	0	0	Median	0.803	1.0074	13.159	3	3	Median	1.1562	1.087	NaN	1	0	Median	0.84304	0.86954	NaN	1	0	Median	590250000	312160000	278090000	0	0	0	229850000	134600000	95253000	213940000	103110000	110830000	146460000	74452000	72005000	34300	2569	32460	211055;211056;211057;211058;211059	284836;284837;284838;284839;284840;284841;284842;284843;284844	284841			9	
LSVSNMVHTAK	1	Unmodified	1185.6176	0.61759251	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	2		2	36.155	35.229	2;3	0.00035599	29364	160511_QHF_FH_JSI10i_3	63.091	46.459			0.72384	0.84525	41.573	5	1	Median	1.5304	1.2559	NaN	1	0	Median	0.81847	0.9364	14.483	2	0	Median	NaN	NaN	NaN	0	0	Median	0.52993	0.52969	27.941	2	1	Median	554490000	335460000	219030000	42611000	21341000	21270000	166340000	91578000	74761000	0	0	0	345540000	222540000	123000000	34301	2612	32461	211060;211061;211062;211063;211064	284845;284846;284847;284848;284849	284845			5	
LSVTATR	0	Unmodified	746.42865	0.42865276	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							1	2	3	1	16.626	16.326	2	0.0096628	13147	160511_QHF_FH_JSI12i_3	78.178	22.087			0.80128	0.86077	21.639	7	0	Median	1.1421	0.96945	NaN	1	0	Median	0.63886	0.77117	15.545	2	0	Median	0.9932	0.96042	29.433	3	0	Plateau	0.98299	1.0109	NaN	1	0	Median	1991700000	1003100000	988500000	311670000	138750000	172920000	483730000	276280000	207450000	821360000	415340000	406020000	374890000	172770000	202110000	34302	1216	32462	211065;211066;211067;211068;211069;211070;211071	284850;284851;284852	284852			3	
LSVTVDPK	1	Unmodified	857.48583	0.48583328	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.382	34.777	2	0.0070198	31485	160511_QHF_FH_JSI12i_1	60.799	25.305			0.99443	0.91409	34.988	4	0	Median	1.0335	0.84366	NaN	1	0	Median	0.77318	0.90076	NaN	1	0	Median	0.95686	0.92762	NaN	1	0	Median	1.7292	1.7837	NaN	1	0	Median	550810000	247560000	303250000	102920000	36550000	66367000	155370000	78416000	76956000	165390000	76000000	89393000	127130000	56596000	70530000	34303	2147	32463	211072;211073;211074;211075	284853;284854;284855;284856;284857	284854			5	
LSVTVDPKYHPK	2	Acetyl (K)	1424.7664	0.76636524	2147	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		57.223	46.498	3	0.00040214	25548	160513_QHF_FH_JSI11Kac_5	74.698	66.787			0.76381	0.83011	138.09	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8554	2.204	NaN	1	0	Median	0.31443	0.31266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23172000	15586000	7585400	0	0	0	5919200	2512000	3407300	17253000	13074000	4178100	0	0	0	34304	2147	32464	211076;211077	284858;284859	284858	2252		2	
LSVYQAMK	1	Unmodified	938.48954	0.48953845	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.951	40.74	2	0.019228	34839	160511_QHF_FH_JSI12i_3	57.281	38.841			1.5215	1.5583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5215	1.5583	NaN	1	1	Median	66624000	24574000	42051000	0	0	0	0	0	0	0	0	0	66624000	24574000	42051000	34305	2636	32465	211078	284860	284860			1	
LSWGKGSSGGSGAK	2	Acetyl (K)	1319.647	0.64697839	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.764							1	1	4	2	1	1	2	42.348	32.896	2	0.0024211	18341	160513_QHF_FH_JSI10Kac_6	71.888	44.146			0.7935	0.89512	62.861	6	0	Median	2.073	1.7544	9.9049	2	0	Median	1.2129	1.4496	NaN	1	0	Median	0.51913	0.49486	NaN	1	0	Median	0.49868	0.54658	1.5826	2	0	Median	83948000	44884000	39064000	20628000	6877300	13751000	22525000	9413000	13112000	17264000	12093000	5171300	23531000	16501000	7029800	34306	2217	32466	211079;211080;211081;211082;211083;211084	284861;284862;284863;284864;284865	284865	2333		5	
LSWHLPGNFAK	1	Unmodified	1268.6666	0.66659162	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			69.293	67.813	3	0.0024855	55612	160511_QHF_FH_JSI9i_3	38.402	35.274			0.81579	0.79121	11.801	2	0	Median	1.0307	0.86007	NaN	1	0	Median	0.64568	0.72787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55315000	31241000	24073000	16095000	7721400	8373900	39219000	23520000	15699000	0	0	0	0	0	0	34307	1543	32467	211085;211086	284866;284867	284867			2	
LSWHLWEVLR	0	Unmodified	1337.7244	0.72444085	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.44	77.191	3	6.6891E-09	42239	160513_QHF_FH_JSI9Kac_6	115.57	103.99			1.1242	1.1302	8.9001	4	0	Median	1.4009	1.1788	NaN	1	0	Median	0.81377	0.97618	NaN	1	0	Median	1.2275	1.1767	NaN	1	0	Median	1.0296	1.0856	NaN	1	0	Median	976680000	466760000	509930000	211940000	85740000	126200000	467740000	254010000	213730000	111270000	46566000	64703000	185740000	80445000	105290000	34308	1790	32468	211087;211088;211089;211090	284868;284869;284870;284871;284872;284873;284874;284875	284871			8	
LSWLDGSGLGFSLEYPTISLHALSR	0	Unmodified	2718.4017	0.40171631	1816	P54105	CLNS1A	Methylosome subunit pICln	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	96.85	87.596	3	1.332E-110	47809	160513_QHF_FH_JSI12Kac_6	234.39	213.02			0.91412	0.85939	8.8568	2	0	Median	1.0832	0.91493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77144	0.80722	NaN	1	0	Median	273300000	127070000	146230000	163820000	74557000	89267000	0	0	0	0	0	0	109480000	52515000	56960000	34309	1816	32469	211091;211092;211093	284876;284877;284878	284877			3	
LSYEHAQSMIESPTEK	1	Unmodified	1848.8564	0.85637882	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	46.647	46.044	3	9.3493E-06	40533	160511_QHF_FH_JSI11i_3	97.235	81.997			0.88375	0.90491	41.649	6	3	Median	NaN	NaN	NaN	0	0	Median	0.42499	0.51848	NaN	1	0	Median	1.5776	1.4924	35.634	3	2	Plateau	0.98215	1.035	44.598	2	1	Median	239990000	110220000	129760000	0	0	0	35272000	23671000	11601000	119550000	51949000	67599000	85168000	34604000	50564000	34310	3465	32470	211094;211095;211096;211097;211098;211099	284879;284880;284881;284882;284883;284884;284885;284886	284879			8	
LSYLEEAVMHLDHSDPITR	0	Unmodified	2225.0787	0.078667612	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	87.927	87.493	4	8.3229E-07	75664	160511_QHF_FH_JSI12i_3	96.487	87.887			1.0672	1.0146	28.335	5	0	Median	NaN	NaN	NaN	0	0	Median	0.71993	0.88246	NaN	1	0	Median	1.3142	1.2325	27.503	2	0	Median	0.80812	0.87317	32.527	2	0	Median	142110000	70568000	71543000	0	0	0	18857000	10051000	8806000	55091000	21721000	33370000	68163000	38796000	29367000	34311	3100	32471	211100;211101;211102;211103;211104	284887;284888;284889;284890;284891;284892	284892			6	
LSYNIMVPFGPFAFMPGK	1	Unmodified	2015.0049	0.0048977284	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	11.7	6.13			1						2	1	1		1	99.571	94.623	2	1.4307E-07	89422	160511_QHF_FH_JSI12i_3	119.69	98.46			2.1061	2.4909	67.911	3	3	Median	4.5461	3.8245	NaN	1	1	Median	2.1061	2.4909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.042	1.011	NaN	1	1	Median	166210000	51236000	114980000	58533000	12447000	46086000	62707000	16408000	46299000	0	0	0	44973000	22382000	22592000	34312	605	32472	211105;211106;211107	284893;284894;284895	284894			3	
LSYNTASNK	1	Unmodified	996.48762	0.4876242	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.79	4	4	4				2	3		4	5	3	5	15.778	12.764	2	9.5573E-06	10573	160511_QHF_FH_JSI12i_3	111.74	75.038			0.96895	1.0504	15.904	17	2	Median	1.2009	0.98487	18.378	4	1	Median	0.95928	1.1605	11.669	5	0	Median	0.76143	0.75227	21.345	3	0	Plateau	1.0338	1.1577	12.025	5	1	Median	12705000000	6371100000	6333800000	2462100000	1259200000	1202900000	3320500000	1719400000	1601100000	3507200000	1490800000	2016400000	3415100000	1901800000	1513400000	34313	1646	32473	211108;211109;211110;211111;211112;211113;211114;211115;211116;211117;211118;211119;211120;211121;211122;211123;211124	284896;284897;284898;284899;284900;284901;284902;284903;284904;284905;284906;284907;284908;284909;284910;284911;284912;284913;284914;284915	284915			20	
LSYNTASNKTR	1	Acetyl (K)	1295.647	0.64697839	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		32.227	22.917	2	0.017201	13735	160513_QHF_FH_JSI10Kac_4	51.927	41.403			0.66026	0.70632	56.309	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89599	1.0518	NaN	1	0	Median	0.48655	0.47433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11014000	7193700	3820100	0	0	0	5123900	2965300	2158500	5889900	4228400	1661500	0	0	0	34314	1646	32474	211125;211126	284916	284916	1658		1	
LSYQNDPPFGSYVVPITVR	0	Unmodified	2151.1001	0.10005498	2189	Q02487	DSC2	Desmocollin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	94.209	93.677	2	0.0038143	80736	160511_QHF_FH_JSI12i_2	51.875	37.617			0.80001	0.84467	3.4258	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88625	0.86538	NaN	1	0	Median	0.72217	0.82445	NaN	1	1	Median	20523000	11919000	8603900	0	0	0	0	0	0	10411000	4630000	5780900	10112000	7289300	2822900	34315	2189	32475	211127;211128	284917;284918	284917			2	
LSYTQLLR	0	Unmodified	992.56548	0.56548059	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.397	61.572	2	0.0034465	54591	160511_QHF_FH_JSI11i_3	72.485	31.456			0.9408	0.9383	5.0478	4	0	Median	1.1804	0.9607	NaN	1	0	Median	0.7553	0.91643	NaN	1	0	Median	1.0212	0.9636	NaN	1	0	Median	0.86672	0.86528	NaN	1	0	Median	348970000	189180000	159790000	81322000	41193000	40129000	79773000	43619000	36154000	84765000	47514000	37252000	103110000	56852000	46257000	34316	2636	32476	211129;211130;211131;211132	284919;284920	284919			2	
LSYTQSGNSLISAIK	1	Unmodified	1580.841	0.84098675	5601	Q9Y3R5	DOPEY2	Protein dopey-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.274	65.975	3	0.059794	56812	160511_QHF_FH_JSI12i_2	9.8466	0			0.96968	1.0416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96968	1.0416	NaN	1	0	Median	44580000	24531000	20050000	0	0	0	0	0	0	0	0	0	44580000	24531000	20050000	34317	5601	32477	211133	284921	284921			1	
LSYVGNNFGTGALK	1	Unmodified	1439.7409	0.74087877	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.183	59.915	2	3.5386E-06	51542	160511_QHF_FH_JSI12i_3	121.29	80.563			0.87541	0.87452	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87541	0.87452	NaN	1	1	Median	77915000	47011000	30905000	0	0	0	0	0	0	0	0	0	77915000	47011000	30905000	34318	4604	32478	211134	284922	284922			1	
LTAATFTVMGLK	1	Unmodified	1251.6897	0.68969482	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	2	3	1	79.673	74.277	2	1.4888E-07	39281	160513_QHF_FH_JSI11Kac_6	140.07	91.984			1.1482	1.1003	14.56	8	4	Median	1.2051	1.0347	20.529	2	2	Median	0.86904	1.0109	0.91266	2	0	Median	1.2716	1.2325	3.2422	3	2	Median	0.87869	0.88243	NaN	1	0	Median	499920000	262580000	237340000	105020000	58539000	46481000	108670000	59988000	48686000	199030000	94150000	104880000	87197000	49907000	37290000	34319	378	32479	211135;211136;211137;211138;211139;211140;211141;211142	284923;284924;284925;284926;284927;284928;284929;284930;284931;284932	284926			9	
LTADFREDPDPRK	1	Unmodified	1558.774	0.77396981	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			32.111	30.731	3	0.060808	25538	160511_QHF_FH_JSI10i_3	38.769	27.713			0.74354	0.90206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74354	0.90206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79741000	47649000	32092000	0	0	0	79741000	47649000	32092000	0	0	0	0	0	0	34320	1111	32480	211143	284933	284933			1	
LTADPDSEIATTSLR	0	Unmodified	1588.7944	0.79443049	584	O75928	PIAS2	E3 SUMO-protein ligase PIAS2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.417	53.755	2	0.011676	48848	160511_QHF_FH_JSI12i_1	57.019	50.166			0.66912	0.6386	15.645	4	1	Median	0.7555	0.64956	NaN	1	1	Median	0.5323	0.62782	NaN	1	0	Median	0.59261	0.56657	NaN	1	0	Median	0.79942	0.82049	NaN	1	0	Median	177020000	107290000	69735000	37035000	23528000	13507000	46205000	28673000	17532000	46661000	27957000	18705000	47122000	27131000	19991000	34321	584	32481	211144;211145;211146;211147	284934;284935	284934			2	
LTAEAEELKPFFMK	2	Unmodified	1652.8484	0.84838031	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	2	4	4	78.238	77.615	2;3	6.1916E-05	68336	160511_QHF_FH_JSI11i_2	130.56	103.23			0.8678	0.90048	34.028	12	6	Median	1.2742	1.0558	34.728	2	0	Median	0.74853	0.90048	2.0139	2	1	Median	0.90134	0.87531	43.868	4	2	Median	0.85906	0.90998	38.997	4	3	Median	2261400000	1212600000	1048800000	198510000	97065000	101440000	329380000	200610000	128770000	796500000	401890000	394620000	937000000	513010000	423990000	34322	1439	32482	211148;211149;211150;211151;211152;211153;211154;211155;211156;211157;211158;211159	284936;284937;284938;284939;284940;284941;284942;284943;284944;284945;284946;284947;284948;284949;284950;284951;284952	284945			17	
LTAEDLFEAR	0	Unmodified	1163.5823	0.58225287	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		71.066	70.334	2	0.020892	61972	160511_QHF_FH_JSI9i_2	41.724	22.62			1.0764	1.0058	6.9452	2	0	Median	1.0977	0.95763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0555	1.0565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109900000	48926000	60977000	42182000	22542000	19640000	0	0	0	67721000	26384000	41337000	0	0	0	34323	2636	32483	211160;211161	284953	284953			1	
LTAEEMDER	0	Unmodified	1092.4757	0.47573888	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.973	22.766	2	0.0003707	19898	160511_QHF_FH_JSI10i_1	81.972	47.148			0.8176	0.86837	14.453	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67259	0.78401	NaN	1	0	Median	0.99389	0.96181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	909880000	439600000	470280000	0	0	0	380900000	188430000	192470000	528980000	251170000	277810000	0	0	0	34324	1600	32484	211162;211163	284954;284955;284956;284957	284957			4	
LTAEEMDER	0	Oxidation (M)	1108.4707	0.47065351	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.335	22.796	2	0.0020546	19844	160511_QHF_FH_JSI11i_1	69.375	50.972			1.5829	1.5231	38.015	4	0	Median	1.6845	1.3747	NaN	1	0	Median	1.5572	1.8538	NaN	1	0	Median	0.79938	0.79302	NaN	1	0	Median	1.609	1.6874	NaN	1	0	Median	515040000	227770000	287280000	126280000	48811000	77469000	132610000	58949000	73665000	134530000	63512000	71021000	121620000	56493000	65123000	34325	1600	32484	211164;211165;211166;211167	284958;284959;284960;284961	284958		1275	4	
LTAEFEEAQTSACR	0	Unmodified	1611.7199	0.71988533	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	40.108	39.641	2	0.004441	36002	160511_QHF_FH_JSI12i_1	55.04	45.353			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34326	5213	32485	211168;211169	284962;284963	284963			2	
LTAELIEQAAQYTNAVR	0	Unmodified	1889.9847	0.98469087	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	3	12								3	4	5	3	90.288	89.799	2;3	9.9323E-108	79001	160511_QHF_FH_JSI11i_2	305.69	284.3			1.2906	1.5982	82.196	15	15	Median	1.92	1.6121	111.15	3	3	Median	0.75329	0.88471	80.547	4	4	Median	2.0562	2.0818	85.42	5	5	Median	0.38636	0.4343	89.303	3	3	Plateau	1257000000	648540000	608440000	274210000	137450000	136760000	193830000	128630000	65194000	535450000	238500000	296960000	253480000	143960000	109520000	34327	937	32486	211170;211171;211172;211173;211174;211175;211176;211177;211178;211179;211180;211181;211182;211183;211184	284964;284965;284966;284967;284968;284969;284970;284971;284972;284973;284974;284975;284976;284977;284978	284976			15	
LTAEQALQHPFFER	0	Unmodified	1685.8526	0.85255449	1082	P15735	PHKG2	Phosphorylase b kinase gamma catalytic chain, liver/testis isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	71.004	70.419	3	9.864E-05	62722	160511_QHF_FH_JSI11i_3	74.296	68.923			0.97334	0.90599	23.008	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2046	1.391	NaN	1	0	Median	0.97334	0.90599	NaN	1	0	Median	0.96339	0.97144	NaN	1	0	Median	215520000	107140000	108380000	0	0	0	38361000	19474000	18887000	97625000	40239000	57386000	79534000	47431000	32102000	34328	1082	32487	211185;211186;211187	284979;284980;284981	284979			3	
LTAFELVYEQIPATLITDSMVAAAMAHR	0	Unmodified	3061.5617	0.56166412	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.75	5.93		2	1						1		2	2		102.68	100.73	3;4	7.124E-10	92191	160511_QHF_FH_JSI10i_2	73.109	66.882			0.99861	1.1073	6.3167	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96289	1.1579	NaN	1	1	Median	1.0356	1.059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171400000	112250000	59154000	0	0	0	150780000	101780000	49001000	20620000	10467000	10153000	0	0	0	34329	4456	32488	211188;211189;211190;211191	284982;284983;284984;284985	284984			3	
LTAFGGFLK	1	Unmodified	952.5382	0.53820321	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				73.329	71.852	2	0.044477	59063	160511_QHF_FH_JSI9i_3	45.335	26.605			0.98196	0.81013	NaN	1	1	Median	0.98196	0.81013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46746000	23588000	23158000	46746000	23588000	23158000	0	0	0	0	0	0	0	0	0	34330	1257	32489	211192	284986	284986			1	
LTAFKPTSSK	2	Unmodified	1078.6023	0.60226003	5156	Q9NZJ5	EIF2AK3	Eukaryotic translation initiation factor 2-alpha kinase 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				19.551	18.349	3	0.048498	14765	160511_QHF_FH_JSI9i_3	31.185	11.424			1.0988	0.89566	NaN	1	1	Median	1.0988	0.89566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27134000	12046000	15088000	27134000	12046000	15088000	0	0	0	0	0	0	0	0	0	34331	5156	32490	211193	284987	284987			1	
LTAFVNTLNGK	1	Unmodified	1176.6503	0.65027285	1842	P55036;A2A3N6	PSMD4;PIPSL	26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	3	3	54.841	53.922	2	0.00014479	47751	160511_QHF_FH_JSI10i_2	94.616	60.363			0.61145	0.59784	77.146	11	11	Median	0.61145	1.0329	79.145	3	3	Plateau	0.48577	0.57667	5.0972	2	2	Median	1.5305	1.5659	82.664	3	3	Median	1.8414	2.0572	95.792	3	3	Median	1372100000	655090000	716980000	257260000	110600000	146660000	199970000	103110000	96854000	478670000	261820000	216850000	436160000	179550000	256610000	34332	1842	32491	211194;211195;211196;211197;211198;211199;211200;211201;211202;211203;211204	284988;284989;284990;284991;284992;284993;284994;284995;284996;284997;284998	284997			11	
LTAGEACAQGLVTEVFPDSTFQK	1	Unmodified	2468.1893	0.18934027	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	94.634	94.285	3	0.015012	85659	160511_QHF_FH_JSI12i_1	29.158	20.679			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34333	538	32492	211205	284999	284999			1	
LTAGLKPGQDANLTQK	2	Unmodified	1653.905	0.90498399	3256	Q7Z392	TRAPPC11	Trafficking protein particle complex subunit 11	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	35.318	35.254	3	0.0022575	29848	160511_QHF_FH_JSI12i_3	50.608	38.693			1.0061	1.0107	29.767	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2803	1.2475	NaN	1	0	Median	0.79063	0.81888	NaN	1	0	Median	176590000	95333000	81254000	0	0	0	0	0	0	62771000	26092000	36679000	113820000	69241000	44575000	34334	3256	32493	211206;211207	285000;285001	285001			2	
LTAGTGHK	1	Unmodified	783.4239	0.42390173	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	4.6954	4.4744	2	0.020585	2329	160511_QHF_FH_JSI10i_3	45.68	22.661			1.0308	0.84703	45.032	4	0	Linear	3.0257	2.5291	NaN	1	0	Median	0.95124	1.0641	NaN	1	0	Median	1.0804	1.0205	NaN	1	0	Median	0.98349	1.0033	NaN	1	0	Median	829790000	431400000	398390000	33589000	10417000	23173000	135070000	67061000	68012000	257930000	135620000	122320000	403200000	218300000	184890000	34335	2303	32494	211208;211209;211210;211211	285002;285003;285004	285003			3	
LTAIDILTTCAADIQR	0	Unmodified	1773.9295	0.92948418	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.56	100.44	3	1.805E-05	88916	160511_QHF_FH_JSI10i_2	88.73	78.071			1.0446	1.0623	26.9	4	0	Median	1.0318	0.90473	NaN	1	0	Median	1.0575	1.2474	NaN	1	0	Median	0.77609	0.78472	NaN	1	0	Median	1.2524	1.3945	NaN	1	0	Median	90270000	52760000	37509000	17418000	11669000	5749000	16924000	7453700	9470700	27327000	18703000	8623700	28601000	14935000	13666000	34336	552	32495	211212;211213;211214;211215	285005;285006;285007;285008;285009	285009			5	
LTAIELFDILDHYTK	1	Unmodified	1790.9455	0.94545182	2777	Q16880	UGT8	2-hydroxyacylsphingosine 1-beta-galactosyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.38	102.38	3	1.0752E-07	89130	160511_QHF_FH_JSI12i_3	132.44	115.69			0.97325	0.94521	7.1985	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98118	0.8983	NaN	1	1	Median	0.96538	0.99456	NaN	1	1	Median	147940000	74175000	73767000	0	0	0	0	0	0	35086000	17239000	17847000	112860000	56936000	55920000	34337	2777	32496	211216;211217	285010;285011	285011			2	
LTALDYHNPAGFNCK	1	Unmodified	1719.8039	0.80388973	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								1		3	2	52.638	51.666	2;3	1.989E-11	44611	160511_QHF_FH_JSI11i_2	104.79	89.529			0.81734	0.81117	20.674	5	2	Median	0.92372	0.81117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76918	0.75759	2.8958	2	1	Median	0.95555	1.0647	21.446	2	1	Median	367260000	186780000	180480000	45892000	27068000	18824000	0	0	0	168870000	99584000	69285000	152500000	60132000	92369000	34338	5486	32497	211218;211219;211220;211221;211222;211223	285012;285013;285014;285015;285016;285017;285018	285018			7	
LTALYLLWEMYR	0	Unmodified	1570.8218	0.82177163	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.482	90.069	2	4.9525E-12	50687	160513_QHF_FH_JSI9Kac_6	138.71	92.74			0.85411	0.84837	8.9602	2	0	Median	0.92814	0.79628	NaN	1	0	Median	0.78598	0.90386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	229320000	116520000	112800000	118780000	55131000	63650000	110540000	61387000	49151000	0	0	0	0	0	0	34339	5384	32498	211224;211225	285019;285020;285021	285019			3	
LTAQFVAR	0	Unmodified	904.51305	0.51305109	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	40.266	34.698	2	0.0032118	29121	160511_QHF_FH_JSI10i_3	74.255	47.293			1.0275	1.0126	12.247	9	0	Median	1.6313	1.3466	22.407	3	0	Plateau	0.89888	1.0453	4.4971	2	0	Median	1.0312	0.97759	0.37526	2	0	Median	0.98722	1.0415	9.1855	2	0	Median	1041400000	479230000	562210000	90739000	34756000	55983000	200580000	93857000	106730000	341460000	165630000	175830000	408660000	184980000	223670000	34340	2676	32499	211226;211227;211228;211229;211230;211231;211232;211233;211234	285022;285023;285024	285022			3	
LTASSTPPTLDRK	1	Unmodified	1385.7514	0.75144346	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			27.798	26.682	3	0.020607	23252	160511_QHF_FH_JSI10i_2	36.445	27.932			0.57269	0.67995	5.5065	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57269	0.67995	5.5065	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53763000	32479000	21284000	0	0	0	53763000	32479000	21284000	0	0	0	0	0	0	34341	4586	32500	211235;211236	285025;285026	285026			2	
LTATPTPLGGMTGFHMQTEDR	0	Oxidation (M)	2276.0566	0.056551961	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	59.056	58.459	3	1.3186E-09	51879	160511_QHF_FH_JSI11i_3	103.95	95.346			1.4043	1.5137	20.143	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4043	1.6393	NaN	1	0	Median	1.6061	1.5137	NaN	1	0	Median	1.1112	1.119	NaN	1	0	Median	127620000	55275000	72342000	0	0	0	18027000	8093800	9933100	57818000	24993000	32825000	51772000	22188000	29584000	34342	542	32501	211237;211238;211239	285027;285028;285029;285030;285031	285027		201	5	
LTATPTPLGGMTGFHMQTEDR	0	Unmodified	2260.0616	0.061637339	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	71.095	70.518	3	7.6296E-28	62992	160511_QHF_FH_JSI11i_3	186.3	147.47			1.1101	1.0196	21.132	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0544	0.96837	7.295	2	2	Median	1.1594	1.2749	24.772	3	2	Median	1196300000	582990000	613350000	0	0	0	0	0	0	712350000	348140000	364220000	483990000	234850000	249140000	34343	542	32501	211240;211241;211242;211243;211244	285032;285033;285034;285035;285036;285037	285033			6	
LTAYAMTIPFVR	0	Unmodified	1381.7428	0.74279303	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.17		6	6						5	2	4	6	5	89.464	85.935	2;3	9.5564E-20	44306	160513_QHF_FH_JSI10Kac_6	159.83	137.74			1.1944	1.2613	28.223	12	4	Median	1.8103	1.5382	6.0683	2	0	Median	0.83045	0.99667	20.187	3	1	Median	1.2609	1.2039	28.524	4	1	Median	1.2807	1.3165	39.011	3	2	Plateau	2114100000	1077600000	1036500000	324410000	154680000	169730000	587650000	319360000	268290000	704270000	361140000	343120000	497810000	242450000	255360000	34344	1507	32502	211245;211246;211247;211248;211249;211250;211251;211252;211253;211254;211255;211256;211257;211258;211259;211260;211261	285038;285039;285040;285041;285042;285043;285044;285045;285046;285047;285048;285049;285050;285051;285052;285053;285054;285055;285056;285057;285058;285059;285060	285060			23	
LTAYAMTIPFVR	0	Oxidation (M)	1397.7377	0.73770765	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.373								1	5	3		2	1	78.66	69.195	2	5.976E-15	37341	160513_QHF_FH_JSI9Kac_6	140.49	112.09			0.98306	0.94905	29.966	3	3	Median	1.1444	0.97577	42.317	2	2	Median	NaN	NaN	NaN	0	0	Median	0.98306	0.94905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	169580000	79210000	90366000	85239000	36743000	48495000	0	0	0	84338000	42467000	41870000	0	0	0	34345	1507	32502	211262;211263;211264;211265;211266;211267	285061;285062;285063;285064;285065;285066	285065		1186	6	
LTAYTATPEAIYGTSHVAISPSHR	0	Unmodified	2542.2816	0.28160117	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	61.166	60.643	4	3.9569E-06	53933	160511_QHF_FH_JSI11i_3	57.216	54.334			1.209	1.3246	17.417	4	1	Median	1.6109	1.3677	NaN	1	0	Median	1.1626	1.407	NaN	1	1	Median	1.0465	0.96231	NaN	1	0	Median	1.2572	1.2829	NaN	1	0	Median	405660000	187770000	217880000	51566000	22140000	29426000	75555000	30599000	44956000	90746000	47002000	43745000	187790000	88034000	99756000	34346	2610	32503	211268;211269;211270;211271	285067;285068;285069	285067			3	
LTCLQNLK	1	Unmodified	988.53755	0.53755128	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.739	3	5	3							1	2	3	5	35.505	34.843	2	0.0046301	31187	160511_QHF_FH_JSI11i_1	66.799	36.992			0.66924	0.74975	103.55	9	7	Median	0.52761	0.44854	NaN	1	1	Median	0.48915	0.60636	NaN	1	1	Median	0.67912	0.66864	47.128	2	1	Median	2.175	2.2835	108.74	5	4	Median	3231500000	1629100000	1602400000	202350000	118150000	84195000	416020000	256560000	159460000	1128100000	702180000	425950000	1485000000	552220000	932780000	34347	893	32504	211272;211273;211274;211275;211276;211277;211278;211279;211280;211281;211282	285070;285071;285072;285073;285074;285075;285076;285077;285078;285079;285080;285081	285071			12	
LTDAQILTR	0	Unmodified	1029.5819	0.58185893	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	40.819	39.651	2	0.050184	34819	160511_QHF_FH_JSI10i_2	44.203	26.168			0.90921	1.0669	13.123	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95944	1.1706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86161	0.97232	NaN	1	1	Median	275640000	153440000	122200000	0	0	0	123990000	70300000	53694000	0	0	0	151650000	83138000	68508000	34348	1429	32505	211283;211284	285082;285083	285083			2	
LTDASWYTVVFDDGDEK	1	Unmodified	1959.8738	0.87380302	2839	Q4LE39	ARID4B	AT-rich interactive domain-containing protein 4B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.881	80.881	3	0.044064	72287	160511_QHF_FH_JSI11i_3	22.154	0.92122			1.058	0.99707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.058	0.99707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59709000	33869000	25840000	0	0	0	0	0	0	59709000	33869000	25840000	0	0	0	34349	2839	32506	211285	285084	285084			1	
LTDCVVMRDPASK	1	Unmodified	1490.7221	0.72213394	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.576	1	8	4							2	2	5	4	35.812	35.193	2;3	1.6346E-09	30677	160511_QHF_FH_JSI11i_3	148.18	116.17			1.0782	1.0098	31.048	13	0	Median	1.1643	0.98145	4.0299	2	0	Median	0.96931	1.1715	16.443	2	0	Median	0.88273	0.83293	30.539	5	0	Median	1.2379	1.315	30.912	4	0	Median	5568900000	2820000000	2748900000	478900000	240610000	238290000	839610000	431960000	407650000	2242000000	1172000000	1070100000	2008300000	975430000	1032900000	34350	1212	32507	211286;211287;211288;211289;211290;211291;211292;211293;211294;211295;211296;211297;211298	285085;285086;285087;285088;285089;285090;285091;285092;285093;285094;285095;285096;285097;285098;285099;285100;285101	285086			17	
LTDDHVQFLIYQILR	0	Unmodified	1873.0098	0.0097834104	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			93.439	86.108	3	7.6775E-17	50101	160513_QHF_FH_JSI10Kac_6	136.33	122.1			0.86568	0.88074	0.065299	2	0	Median	1.0081	0.88115	NaN	1	0	Median	0.74341	0.88034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1129300000	605370000	523890000	338650000	142380000	196270000	790600000	462980000	327620000	0	0	0	0	0	0	34351	2736	32508	211299;211300	285102;285103	285103			1	
LTDDQLIK	1	Unmodified	944.51786	0.51786169	4035	Q96DZ1	ERLEC1	Endoplasmic reticulum lectin 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	9	5.66	1					2					1	1	1	40.468	34.199	2	0.046334	18156	160513_QHF_FH_JSI10Kac_3	45.081	4.8131			0.80299	0.85752	9.4122	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.84648	0.99906	NaN	1	0	Median	1.0641	1.0081	NaN	1	0	Median	0.80299	0.85274	NaN	1	1	Median	55699000	31394000	24305000	0	0	0	3733300	2100500	1632800	2016500	1156800	859690	49949000	28137000	21813000	34352	4035	32509	211301;211302;211303	285104;285105	285105			2	
LTDDVKK	2	Unmodified	817.45453	0.45453316	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		5.67	5.91	1	1					1				2	1		8.4158	5.6478	2;3	0.034104	5251	160511_QHF_FH_JSI10i_1	32.355	2.1697			0.54759	0.62984	25.575	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.54052	0.63979	2.2186	2	2	Median	1.0227	0.99554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	254010000	152580000	101420000	0	0	0	243460000	147540000	95920000	10546000	5046100	5500000	0	0	0	34353	2412	32510	211304;211305;211306	285106;285107;285108	285106			3	
LTDEQVALVR	0	Unmodified	1142.6295	0.62953741	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		43.759	42.96	2	0.039562	38153	160511_QHF_FH_JSI9i_1	45.368	32.841			1.007	0.87968	20.839	2	2	Median	1.2541	1.0193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80855	0.75915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92419000	56503000	35915000	42858000	22064000	20795000	0	0	0	49560000	34440000	15120000	0	0	0	34354	2496	32511	211307;211308	285109;285110	285110			2	
LTDFGLSK	1	Unmodified	879.47018	0.47018322	2669;1755;4100	Q15418;Q9Y2H9;Q6P0Q8;O15021;P51812;Q9UK32;Q96GX5	RPS6KA1;MAST1;MAST2;MAST4;RPS6KA3;RPS6KA6;MASTL	Ribosomal protein S6 kinase alpha-1;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 4;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Serine/threonine-protein kinase greatwall	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	44.528	43.79	2	0.014788	38572	160511_QHF_FH_JSI10i_2	51.066	0			0.95209	0.9888	18.208	7	0	Median	0.93916	0.7905	24.004	2	0	Median	0.81608	0.97784	5.4264	2	0	Median	1.1398	1.1369	6.4374	2	0	Median	0.95209	0.9888	NaN	1	0	Median	991300000	493340000	497970000	195420000	81409000	114010000	282670000	162330000	120330000	433600000	213870000	219730000	79621000	35725000	43895000	34355	2669;1755;4100	32512	211309;211310;211311;211312;211313;211314;211315	285111;285112;285113;285114	285114			4	
LTDFNFLMVLGK	1	Unmodified	1396.7425	0.74245868	1112	P17252	PRKCA	Protein kinase C alpha type	no	no	0	0	0	0	By MS/MS				16	0									1	1				95.651	86.639	2	5.6678E-05	49155	160513_QHF_FH_JSI9Kac_6	102.53	85.3			1.1563	0.99447	NaN	1	1	Median	1.1563	0.99447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86900000	44826000	42074000	86900000	44826000	42074000	0	0	0	0	0	0	0	0	0	34356	1112	32513	211316	285115	285115			1	
LTDIFRR	0	Unmodified	919.52395	0.52395013	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				33.974	32.544	3	0.018099	26545	160511_QHF_FH_JSI9i_3	38.792	14.819			0.5571	0.4623	NaN	1	1	Median	0.5571	0.4623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18856000	11663000	7193300	18856000	11663000	7193300	0	0	0	0	0	0	0	0	0	34357	503	32514	211317	285116	285116			1	
LTDIHGNVLQYHK	1	Unmodified	1536.8049	0.80487601	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	1	4	4	36.731	36.218	2;3;4	4.4879E-05	31532	160511_QHF_FH_JSI11i_3	81.278	73.553			0.71422	0.78599	46.698	9	0	Median	0.94981	0.81662	38.761	2	0	Median	0.86586	1.0805	NaN	1	0	Median	0.38107	0.35273	37.397	3	0	Median	1.0386	1.0579	18.759	3	0	Median	1168300000	638380000	529960000	137920000	65612000	72309000	170640000	87181000	83457000	404440000	268310000	136130000	455330000	217270000	238060000	34358	738	32515	211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328	285117;285118;285119;285120;285121;285122;285123;285124;285125	285118			8	
LTDIHGNVLQYHKDVK	2	Acetyl (K)	1921.0058	0.005760665	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.526	46.798	4	0.0013291	25310	160513_QHF_FH_JSI11Kac_6	55.437	45.688			0.22748	0.2146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22748	0.2146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28645000	23638000	5007400	0	0	0	0	0	0	28645000	23638000	5007400	0	0	0	34359	738	32516	211329	285126	285126	363		1	
LTDISVTDPEK	1	Unmodified	1216.6187	0.61869795	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	41.686	41.101	2	2.507E-10	37010	160511_QHF_FH_JSI10i_1	140.16	82.204			0.96069	1.0226	20.14	5	2	Median	0.96069	0.77792	NaN	1	0	Median	0.86968	1.0513	NaN	1	0	Median	1.1895	1.1557	17.302	2	2	Median	0.81656	0.85124	NaN	1	0	Median	2873300000	1335300000	1538000000	408020000	215490000	192530000	640110000	313980000	326130000	1353300000	587340000	765960000	471900000	218490000	253400000	34360	5558	32517	211330;211331;211332;211333;211334	285127;285128;285129;285130;285131	285131			5	
LTDPIPTTETSIAPR	0	Unmodified	1610.8516	0.85155143	2792	Q2M2I8	AAK1	AP2-associated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		62.172	61.541	2	0.00034284	54612	160511_QHF_FH_JSI9i_1	98.105	62.691			1.0733	1.1033	15.001	3	2	Median	1.0733	0.87937	NaN	1	0	Median	0.97582	1.1033	NaN	1	1	Median	1.204	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	124190000	64058000	60136000	47553000	23642000	23911000	30818000	16774000	14044000	45823000	23642000	22181000	0	0	0	34361	2792	32518	211335;211336;211337	285132;285133;285134;285135	285134			4	
LTDQVMQNPR	0	Unmodified	1200.5921	0.59210605	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	3	2	27.156	25.549	2	5.6215E-11	22034	160511_QHF_FH_JSI9i_2	146.69	116.62			0.93928	0.9553	32.411	10	1	Median	1.1356	0.9459	18.861	2	0	Median	0.8729	1.0319	58.566	3	1	Median	0.75222	0.75329	18.889	3	0	Plateau	0.91216	0.98332	16.402	2	0	Median	2948700000	1453900000	1494800000	828410000	347690000	480710000	749020000	378650000	370370000	638280000	301600000	336680000	732980000	425990000	306990000	34362	4309	32519	211338;211339;211340;211341;211342;211343;211344;211345;211346;211347	285136;285137;285138;285139;285140;285141;285142;285143;285144;285145;285146;285147;285148;285149	285146			14	
LTDQVMQNPR	0	Oxidation (M)	1216.587	0.58702067	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	14.774	14.345	2	0.0070571	12060	160511_QHF_FH_JSI12i_1	60.045	47.218			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34363	4309	32519	211348	285150	285150		2440	1	
LTDRDIIVLQR	0	Unmodified	1340.7776	0.77759863	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							2	1	2	1	53.927	52.713	3	0.00015605	43902	160511_QHF_FH_JSI10i_3	60.255	33.106			0.93467	0.95305	34.909	5	0	Median	0.86643	0.73382	58.622	2	0	Median	0.93467	1.1372	NaN	1	0	Median	0.95417	0.95218	NaN	1	0	Median	0.86225	0.95305	NaN	1	0	Median	239070000	113320000	125750000	104240000	45130000	59113000	81956000	42217000	39738000	40897000	20172000	20726000	11976000	5805700	6170500	34364	5554	32520	211349;211350;211351;211352;211353;211354	285151;285152;285153;285154;285155	285152			5	
LTDSLFLWVGATPHLR	0	Unmodified	1824.9887	0.98865404	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	4	2	3	1	95.376	91.702	2;3	5.9921E-43	46637	160513_QHF_FH_JSI10Kac_6	179.93	152.96			0.69599	0.82412	49.711	9	6	Median	0.89666	0.78513	47.657	4	3	Median	0.5155	0.60719	43.199	2	1	Median	1.2354	1.1367	2.074	2	1	Median	0.29185	0.32501	NaN	1	1	Median	592600000	308280000	284310000	226740000	98698000	128040000	116480000	71850000	44627000	234280000	124310000	109970000	15104000	13426000	1677800	34365	2901	32521	211355;211356;211357;211358;211359;211360;211361;211362;211363;211364	285156;285157;285158;285159;285160;285161;285162;285163;285164;285165;285166	285166			11	
LTDTLVSK	1	Unmodified	875.4964	0.49639797	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	28.334	27.732	2	0.037626	24706	160511_QHF_FH_JSI12i_1	40.002	8.0671			0.90857	0.96287	49.874	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1667	1.3841	64.007	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90857	0.96287	NaN	1	0	Median	406600000	219730000	186870000	0	0	0	198030000	109550000	88482000	0	0	0	208570000	110180000	98389000	34366	3328	32522	211365;211366;211367	285167	285167			1	
LTDYRGK	1	Unmodified	851.45012	0.45011648	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	6.7341	6.7829	3	0.024191	4335	160511_QHF_FH_JSI12i_3	38.792	14.819			1.5842	1.5176	59.621	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5188	2.3134	NaN	1	0	Median	0.99637	0.99554	NaN	1	0	Median	1191200000	518930000	672260000	0	0	0	0	0	0	343100000	109880000	233220000	848090000	409050000	439040000	34367	2364	32523	211368;211369	285168	285168			1	
LTDYVAFLEN	0	Unmodified	1183.5761	0.57610486	4297	Q99627	COPS8	COP9 signalosome complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.134	88.7	2	0.0091669	80634	160511_QHF_FH_JSI12i_1	58.981	48.151			0.9423	0.93725	4.4691	4	0	Median	1.1744	0.97547	NaN	1	0	Median	0.74335	0.88245	NaN	1	0	Median	0.96895	0.91795	NaN	1	0	Median	0.91639	0.95696	NaN	1	0	Median	211410000	116900000	94507000	44491000	19544000	24947000	63316000	40511000	22805000	65449000	35751000	29698000	38154000	21097000	17057000	34368	4297	32524	211370;211371;211372;211373	285169;285170;285171;285172	285170			4	
LTEAKPVDK	2	Unmodified	999.56006	0.56006086	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							4	1	1	2	10.268	9.8486	2;3	0.00021075	7238	160511_QHF_FH_JSI11i_2	102.07	65.047			1.1167	1.1419	84.592	8	4	Median	2.3158	1.9132	106.27	4	3	Median	0.32596	0.40518	NaN	1	1	Median	1.0568	1.0723	NaN	1	0	Median	0.94883	0.97606	31.086	2	0	Median	1745100000	890920000	854140000	819920000	327050000	492880000	400850000	287930000	112930000	313290000	166750000	146540000	210990000	109200000	101790000	34369	1786	32525	211374;211375;211376;211377;211378;211379;211380;211381	285173;285174;285175;285176;285177;285178;285179;285180;285181;285182	285179			10	
LTEDEEGNAK	1	Unmodified	1104.4935	0.49349744	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.6429	8.4636	2	0.00028577	6176	160511_QHF_FH_JSI11i_1	88.819	55.926			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34370	122	32526	211382;211383	285183;285184	285183			2	
LTEDLEYHELLDR	0	Unmodified	1644.7995	0.79951586	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	62.155	61.229	3	1.4617E-05	52589	160511_QHF_FH_JSI12i_2	106.58	95.79			0.80084	0.70363	27.437	3	0	Median	0.80084	0.67782	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68596	0.70363	NaN	1	0	Median	0.98698	1.1095	NaN	1	0	Median	248950000	129290000	119660000	61066000	32941000	28125000	0	0	0	94327000	50377000	43950000	93559000	45977000	47582000	34371	1201	32527	211384;211385;211386	285185;285186	285186			2	
LTEEGSPK	1	Unmodified	859.42871	0.42871234	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.3002	8.1236	2	0.031057	5979	160511_QHF_FH_JSI10i_1	41.448	17.262			0.84334	0.91485	9.3224	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82456	0.97719	NaN	1	0	Median	0.86255	0.85649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	214360000	115890000	98469000	0	0	0	111450000	57509000	53940000	102910000	58385000	44529000	0	0	0	34372	5258	32528	211387;211388	285187;285188	285188			2	
LTEELQTVENGYHDNPTLEVMETSSEMQEK	1	Unmodified	3480.5549	0.55486001	155	O00592	PODXL	Podocalyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	81.543	80.9	3	3.9622E-26	73451	160511_QHF_FH_JSI10i_1	130.46	128.37			0.73447	0.81589	34.832	4	4	Median	1.3158	1.1511	NaN	1	1	Median	0.63641	0.73997	NaN	1	1	Median	0.51318	0.5045	NaN	1	1	Median	0.84765	0.89959	NaN	1	1	Median	94248000	60991000	33258000	13427000	3012700	10414000	49733000	35921000	13812000	18052000	12857000	5194300	13036000	9199500	3836400	34373	155	32529	211389;211390;211391;211392	285189;285190;285191;285192;285193;285194	285190			6	
LTEERDGSLNQSSGYR	0	Unmodified	1810.8446	0.84456858	845	P06241	FYN	Tyrosine-protein kinase Fyn	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		19.741	19.741	3	0.0037182	16475	160511_QHF_FH_JSI11i_3	34.909	24.275			1.0255	0.95558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0255	0.95558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50828000	30495000	20332000	0	0	0	0	0	0	50828000	30495000	20332000	0	0	0	34374	845	32530	211393	285195;285196	285195			2	
LTEGCSFR	0	Unmodified	968.43857	0.43856552	1541;3208	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	6.16	3	4	1				1	3		1	4	3	4	22.185	18.74	2	0.0057259	16455	160511_QHF_FH_JSI10i_2	64.757	36.229			1.0203	1.0002	26.485	12	0	Median	1.0606	0.9125	NaN	1	0	Median	0.82594	0.97947	8.8535	4	0	Median	0.96696	0.95861	11.741	3	0	Median	1.4441	1.5427	22.234	4	0	Median	2765800000	1445500000	1320300000	262200000	129530000	132660000	798310000	427090000	371220000	1065000000	582880000	482110000	640310000	305960000	334350000	34375	1541;3208	32531	211394;211395;211396;211397;211398;211399;211400;211401;211402;211403;211404;211405	285197;285198;285199;285200;285201;285202;285203;285204;285205	285204			9	
LTEHQVAEPPEDWPALIWQQQR	0	Unmodified	2670.319	0.31904931	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	91.749	91.535	3	3.0435E-07	79201	160511_QHF_FH_JSI12i_3	79.467	71.845			0.84279	0.90803	20.899	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85447	1.0526	NaN	1	0	Median	0.83127	0.78328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101410000	63420000	37990000	0	0	0	41738000	22428000	19310000	59673000	40992000	18680000	0	0	0	34376	3100	32532	211406;211407;211408	285206;285207;285208	285208			3	
LTEIVASAPK	1	Unmodified	1027.5914	0.59136099	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				36.227	34.995	2	0.0092299	30823	160511_QHF_FH_JSI9i_1	58.955	39.178			2.033	1.6463	NaN	1	1	Median	2.033	1.6463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68628000	23778000	44851000	68628000	23778000	44851000	0	0	0	0	0	0	0	0	0	34377	426	32533	211409	285209	285209			1	
LTELGTVDPK	1	Unmodified	1071.5812	0.58119023	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.268	36.655	2	0.00018193	32936	160511_QHF_FH_JSI11i_1	82.452	61.152			0.6599	0.68945	23.725	4	1	Median	0.63464	0.52154	NaN	1	1	Median	0.59115	0.70506	NaN	1	0	Median	0.68617	0.67419	NaN	1	0	Median	0.91428	0.93076	NaN	1	0	Median	404210000	210740000	193470000	75221000	35203000	40019000	124540000	76574000	47963000	119740000	59560000	60182000	84706000	39399000	45307000	34378	1600	32534	211410;211411;211412;211413	285210;285211;285212;285213;285214;285215	285211			6	
LTELMFEHYNIPAFFLCK	1	Unmodified	2272.1061	0.10606834	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			93.836	88.115	3	8.4881E-09	50601	160513_QHF_FH_JSI10Kac_6	117.26	103.8			1.0251	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0251	1.2288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	309080000	182100000	126980000	0	0	0	309080000	182100000	126980000	0	0	0	0	0	0	34379	758	32535	211414;211415	285216;285217;285218	285217			3	
LTELQLR	0	Unmodified	871.51272	0.51271674	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				39.484	38.437	2	0.04145	33505	160511_QHF_FH_JSI9i_2	46.663	5.9776			1.0955	0.92617	NaN	1	0	Median	1.0955	0.92617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	240880000	106300000	134580000	240880000	106300000	134580000	0	0	0	0	0	0	0	0	0	34380	3296	32536	211416	285219	285219			1	
LTELYNAYVETQDQLLLEK	1	Unmodified	2282.1682	0.16819413	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	96.808	96.614	3	4.2719E-09	87513	160511_QHF_FH_JSI10i_1	109.72	95.103			0.20621	0.22543	7.4226	2	2	Median	NaN	NaN	NaN	0	0	Median	0.19657	0.21391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21632	0.23758	NaN	1	1	Median	23597000	19998000	3598800	0	0	0	11355000	9103200	2251900	0	0	0	12241000	10895000	1346900	34381	1016	32537	211417;211418	285220;285221	285221			2	
LTEMETLQSQLMAEK	1	Oxidation (M)	1766.843	0.84303694	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	65.113	64.598	2	1.8989E-11	57281	160511_QHF_FH_JSI9i_1	111.79	88.557			0.91167	0.9064	38.702	4	3	Median	NaN	NaN	NaN	0	0	Median	0.5087	0.56414	NaN	1	1	Median	0.88952	0.83877	NaN	1	0	Median	1.1556	1.1865	27.115	2	2	Median	98036000	59006000	39030000	0	0	0	19730000	14574000	5155600	23416000	13198000	10219000	54889000	31234000	23655000	34382	1436	32538	211419;211420;211421;211422;211423	285222;285223;285224;285225;285226;285227;285228	285228		1103	7	
LTEMETLQSQLMAEK	1	Unmodified	1750.8481	0.84812231	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.606	9	7	1							5	3	4	5	74.507	73.755	2;3	2.1555E-16	64981	160511_QHF_FH_JSI9i_2	194.24	170.64			1.0533	0.93951	39.656	16	7	Median	1.1836	0.97497	16.725	4	2	Median	0.7279	0.84654	75.73	3	1	Plateau	1.153	1.1322	19.682	4	2	Median	0.83786	0.9233	39.253	5	2	Median	3739100000	1678200000	2060900000	667980000	282450000	385530000	935440000	365010000	570430000	1186300000	539340000	646960000	949400000	491420000	457980000	34383	1436	32538	211424;211425;211426;211427;211428;211429;211430;211431;211432;211433;211434;211435;211436;211437;211438;211439;211440	285229;285230;285231;285232;285233;285234;285235;285236;285237;285238;285239;285240;285241;285242;285243;285244;285245;285246;285247;285248;285249;285250;285251;285252;285253;285254;285255;285256;285257	285252			29	
LTEPASVPIHK	1	Unmodified	1190.6659	0.66592292	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.006	33.596	3	0.050451	28592	160511_QHF_FH_JSI11i_2	25.342	12.386			1.3406	1.3767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3406	1.3767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	94075000	46134000	47941000	0	0	0	0	0	0	94075000	46134000	47941000	0	0	0	34384	2612	32539	211441	285258	285258			1	
LTEPQHGLGSQR	0	Unmodified	1321.6739	0.67386184	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		15.352	15.352	2	0.027324	12593	160511_QHF_FH_JSI11i_3	42.001	13.988			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34385	2446	32540	211442	285259	285259			1	
LTEPVVPK	1	Unmodified	881.52222	0.52221879	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	33.956	33.354	2	0.012527	29288	160511_QHF_FH_JSI9i_1	53.166	35.131			0.99113	0.98714	22.976	4	0	Median	1.0792	0.88833	NaN	1	0	Median	0.86429	1.0248	NaN	1	0	Median	1.525	1.4864	NaN	1	0	Median	0.91023	0.95083	NaN	1	0	Median	463040000	238060000	224980000	100150000	49275000	50877000	111700000	62126000	49571000	126310000	57009000	69303000	124880000	69654000	55230000	34386	984	32541	211443;211444;211445;211446	285260	285260			1	
LTEQLAGPLR	0	Unmodified	1096.6241	0.6240581	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			45.41	44.123	2	0.038073	36150	160511_QHF_FH_JSI9i_3	45.68	31.523			1.2137	1.2232	18.185	2	2	Median	1.6679	1.391	NaN	1	1	Median	0.88317	1.0756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140510000	74721000	65791000	13583000	4979300	8604000	126930000	69742000	57187000	0	0	0	0	0	0	34387	1532	32542	211447;211448	285261;285262	285261			2	
LTEQPELANK	1	Unmodified	1141.5979	0.59790293	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	28.029	24.757	2	6.7694E-06	21961	160511_QHF_FH_JSI12i_1	107.69	48.878			0.97014	0.97305	24.12	6	0	Median	1.1931	0.96813	NaN	1	0	Median	0.68877	0.80359	27.778	2	0	Median	0.97014	0.95869	17.442	2	0	Median	1.2911	1.3574	NaN	1	0	Median	1160900000	651650000	509280000	269610000	136840000	132780000	318160000	211210000	106950000	273510000	154960000	118550000	299640000	148640000	151010000	34388	763	32543	211449;211450;211451;211452;211453;211454	285263;285264;285265;285266;285267;285268;285269;285270	285265			8	
LTESGLSMVDWHLIK	1	Unmodified	1727.8916	0.89164211	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	86.212	85.686	3	5.8802E-05	76397	160511_QHF_FH_JSI11i_3	83.692	60.889			0.94728	1.0404	15.12	4	1	Median	1.5428	1.2758	NaN	1	0	Median	0.93251	1.1336	NaN	1	0	Median	0.96229	0.92401	NaN	1	0	Median	0.89512	0.95484	NaN	1	1	Median	144660000	75248000	69412000	26250000	10631000	15620000	36877000	18639000	18238000	54876000	32013000	22863000	26657000	13965000	12692000	34389	3215	32544	211455;211456;211457;211458	285271;285272;285273;285274	285271			3	
LTESINRDSEEPFSSVEIQAALSK	1	Unmodified	2649.3134	0.31335481	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	79.199	78.614	3	3.679E-22	69878	160511_QHF_FH_JSI10i_2	140.87	128.19			0.99613	1.0204	8.5277	6	0	Median	1.3202	1.0994	NaN	1	0	Median	0.78763	0.97164	NaN	1	0	Median	1.0797	1.0524	8.5905	2	0	Median	0.89653	0.96812	11.678	2	0	Median	689460000	321640000	367830000	63403000	22922000	40481000	100460000	59017000	41443000	229550000	98743000	130810000	296050000	140950000	155090000	34390	1254	32545	211459;211460;211461;211462;211463;211464	285275;285276;285277;285278;285279;285280;285281;285282;285283;285284;285285;285286;285287	285284			13	
LTESPCALVASQYGWSGNMER	0	Unmodified	2355.0624	0.06236562	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	4	8	2							3	3	4	4	78.427	77.761	2;3	7.7469E-187	68334	160511_QHF_FH_JSI11i_2	322.39	302.65			1.2342	1.188	26.632	12	2	Median	1.4351	1.1902	4.5579	2	1	Median	0.90905	1.0816	8.4568	3	0	Median	1.094	1.1215	6.3861	3	0	Plateau	1.0889	1.5729	23.388	4	1	Linear	1708500000	803270000	905270000	46643000	18812000	27831000	375440000	211560000	163880000	757060000	346780000	410280000	529390000	226120000	303280000	34391	1057	32546	211465;211466;211467;211468;211469;211470;211471;211472;211473;211474;211475;211476;211477;211478	285288;285289;285290;285291;285292;285293;285294;285295;285296;285297;285298;285299;285300;285301;285302;285303;285304;285305;285306;285307;285308	285303			21	
LTESPCALVASQYGWSGNMER	0	Oxidation (M)	2371.0573	0.057280243	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	72.662	71.377	2	0.00040168	61576	160511_QHF_FH_JSI12i_2	59.898	47.733			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34392	1057	32546	211479	285309	285309		688	1	
LTESVDVLMPNVGEIVGGSMR	0	Unmodified	2202.1024	0.10243952	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.36	101.18	2	3.5392E-99	87067	160511_QHF_FH_JSI12i_2	296.14	251.29			0.99071	1.1137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99071	1.1137	NaN	1	1	Median	90952000	52120000	38832000	0	0	0	0	0	0	0	0	0	90952000	52120000	38832000	34393	375	32547	211480	285310	285310			1	
LTETFDFVHNVMSIPHHIIVK	1	Unmodified	2476.2937	0.29368619	4038	Q96E29	MTERF3	Transcription termination factor 3, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.59	100.6	5	0.0078973	87149	160511_QHF_FH_JSI12i_3	32.565	28.761			0.73116	0.75634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73116	0.75634	NaN	1	0	Median	25187000	13534000	11653000	0	0	0	0	0	0	0	0	0	25187000	13534000	11653000	34394	4038	32548	211481	285311	285311			1	
LTETVVTEYLNSGNANEAVNGVR	0	Unmodified	2449.2085	0.20849581	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.4	0.49	3	2									3		2	78.429	77.734	2	1.3769E-137	70540	160511_QHF_FH_JSI10i_1	251	216.82			0.9731	1.2008	10.327	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97585	1.1534	5.6859	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2545	1.36	NaN	1	0	Median	65376000	29681000	35694000	0	0	0	47615000	21380000	26234000	0	0	0	17761000	8300900	9460200	34395	2084	32549	211482;211483;211484;211485;211486	285312;285313;285314;285315;285316;285317;285318	285316			7	
LTEVLTDSHVK	1	Unmodified	1240.6663	0.66631685	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.36	6.24		5	1				2	6		3	3	3	5	36.46	29.998	2;3	1.6383E-05	26212	160511_QHF_FH_JSI10i_2	100.93	90.173			1.8694	2.0061	76.842	12	12	Median	2.0654	1.764	103.45	2	2	Median	2.0492	2.4142	12.678	3	3	Median	1.9664	1.9223	114.84	3	3	Median	1.309	1.4096	82.959	4	4	Median	971260000	389040000	582220000	153380000	37760000	115620000	218820000	108840000	109970000	306940000	117470000	189470000	292120000	124970000	167160000	34396	3860	32550	211487;211488;211489;211490;211491;211492;211493;211494;211495;211496;211497;211498;211499;211500	285319;285320;285321;285322;285323;285324;285325;285326;285327;285328;285329;285330;285331;285332	285331			14	
LTEVPVEPVLTVHPESK	1	Unmodified	1873.0197	0.019679395	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	3.77	1	5	2				1			2	1	1	5	67.919	65.646	2;3	1.5272E-06	57271	160511_QHF_FH_JSI11i_2	86.766	82.524			0.96791	0.97125	30.647	8	4	Median	0.92673	0.76225	21.718	2	2	Median	0.96209	1.197	NaN	1	0	Median	1.1317	1.1729	NaN	1	0	Median	0.75681	0.82792	34.516	4	2	Median	1046200000	529180000	516980000	43269000	21519000	21750000	214420000	105160000	109260000	412740000	206640000	206100000	375730000	195860000	179870000	34397	4686	32551	211501;211502;211503;211504;211505;211506;211507;211508;211509	285333;285334;285335;285336;285337;285338;285339;285340;285341;285342	285340			8	
LTEVSISSDAFFPFR	0	Unmodified	1714.8566	0.85663681	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.89	100.72	2	1.7474E-06	86593	160511_QHF_FH_JSI12i_2	131.17	105.05			0.85381	0.89854	7.2297	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84479	0.85376	NaN	1	0	Median	0.86292	0.94567	NaN	1	0	Median	194290000	104680000	89617000	0	0	0	0	0	0	133640000	71081000	62561000	60653000	33597000	27056000	34398	1381	32552	211510;211511	285343;285344	285343			2	
LTEVSISSDAFFPFRDNVDR	0	Unmodified	2314.123	0.12297527	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1		By MS/MS	By matching		2.67	0.471		1	2								2	1		92.124	91.642	3	0.0041706	76373	160511_QHF_FH_JSI10i_3	41.513	32.33			0.70567	0.68622	32.872	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.91419	1.0921	26.862	2	1	Median	0.70567	0.68622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142770000	83315000	59453000	0	0	0	79584000	48451000	31133000	63184000	34864000	28320000	0	0	0	34399	1381	32553	211512;211513;211514	285345;285346	285345			2	
LTFAQLK	1	Unmodified	819.48544	0.48543935	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.97	50.734	2	0.035052	43420	160511_QHF_FH_JSI12i_3	50.966	27.947			0.54923	0.56145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54923	0.56145	NaN	1	1	Median	297220000	188170000	109050000	0	0	0	0	0	0	0	0	0	297220000	188170000	109050000	34400	4007	32554	211515	285347	285347			1	
LTFDEEAYK	1	Unmodified	1114.5183	0.51825563	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.204	47.523	2	3.1964E-05	42740	160511_QHF_FH_JSI10i_1	101.54	74.017			0.89482	1.1648	17.082	4	0	Linear	0.88646	0.7329	NaN	1	0	Median	0.89299	1.033	NaN	1	0	Median	0.89666	0.88191	NaN	1	0	Median	0.997	1.0623	NaN	1	0	Median	824910000	416160000	408750000	158770000	76794000	81977000	204050000	101150000	102900000	174790000	84997000	89796000	287300000	153220000	134080000	34401	4448	32555	211516;211517;211518;211519	285348;285349;285350;285351	285350			4	
LTFDEYR	0	Unmodified	942.4447	0.44469675	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.122	42.74	2	0.04193	36570	160511_QHF_FH_JSI12i_2	46.426	20.689			1.0895	1.2099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0895	1.2099	NaN	1	0	Median	142920000	73203000	69722000	0	0	0	0	0	0	0	0	0	142920000	73203000	69722000	34402	1018	32556	211520	285352	285352			1	
LTFDSSFSPNTGK	1	Unmodified	1399.662	0.66195975	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.01	4	4	3				3			3	4	4	3	60.885	57.904	2	2.1727E-66	50791	160511_QHF_FH_JSI9i_2	227.94	204.87			0.90693	0.93991	15.853	14	4	Median	1.0609	0.87655	7.6695	3	0	Median	0.79563	0.95984	7.6765	4	1	Median	0.90286	0.90399	22.906	4	2	Median	0.83238	0.9168	17.327	3	1	Plateau	5176300000	2543200000	2633100000	1099000000	484730000	614250000	1319200000	718600000	600620000	1611100000	782030000	829040000	1147100000	557830000	589220000	34403	1195	32557	211521;211522;211523;211524;211525;211526;211527;211528;211529;211530;211531;211532;211533;211534	285353;285354;285355;285356;285357;285358;285359;285360;285361;285362;285363;285364;285365;285366;285367;285368;285369;285370;285371;285372;285373;285374;285375;285376;285377;285378;285379;285380	285371			28	
LTFDSSFSPNTGKK	2	Unmodified	1527.7569	0.75692277	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.39	3	8	10					3	8	8	7	9	8	51.947	48.277	2;3	1.6666E-117	40456	160511_QHF_FH_JSI10i_3	280.19	258.2			0.89199	0.91712	18.16	28	4	Median	1.0782	0.9095	7.6123	6	0	Median	0.79127	0.93103	10.841	7	0	Median	0.94962	0.94635	20.353	8	0	Median	0.80608	0.90809	28.564	7	4	Median	34439000000	16127000000	18312000000	3112900000	1452500000	1660500000	4326200000	1950800000	2375400000	7044000000	3389000000	3654900000	19956000000	9334500000	10621000000	34404	1195	32558	211535;211536;211537;211538;211539;211540;211541;211542;211543;211544;211545;211546;211547;211548;211549;211550;211551;211552;211553;211554;211555;211556;211557;211558;211559;211560;211561;211562;211563;211564;211565;211566	285381;285382;285383;285384;285385;285386;285387;285388;285389;285390;285391;285392;285393;285394;285395;285396;285397;285398;285399;285400;285401;285402;285403;285404;285405;285406;285407;285408;285409;285410;285411;285412;285413;285414;285415;285416;285417;285418;285419;285420;285421;285422;285423;285424;285425;285426;285427;285428;285429;285430;285431;285432;285433;285434;285435;285436;285437;285438;285439;285440;285441;285442;285443;285444;285445;285446;285447	285401			66	
LTFDTTFSPNTGK	1	Unmodified	1427.6933	0.69325988	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.61	5.21	6	4	4				3	1		4	5	4	5	66.247	63.3	2;3	2.0358E-15	55916	160511_QHF_FH_JSI9i_2	162.26	143.52			0.91131	0.92285	15.728	18	4	Median	1.0079	0.83173	9.8119	4	1	Median	0.80343	1.0002	12.011	5	1	Median	0.93713	0.93599	17.513	4	1	Median	0.904	1.0029	21.692	5	1	Median	4052000000	2181400000	1870500000	709410000	343910000	365500000	1037000000	582820000	454180000	1166000000	644560000	521450000	1139600000	610140000	529410000	34405	1570	32559	211567;211568;211569;211570;211571;211572;211573;211574;211575;211576;211577;211578;211579;211580;211581;211582;211583;211584	285448;285449;285450;285451;285452;285453;285454;285455;285456;285457;285458;285459;285460;285461;285462;285463;285464;285465;285466;285467;285468;285469;285470;285471;285472;285473;285474;285475;285476;285477;285478;285479;285480;285481;285482;285483;285484;285485;285486;285487	285476			40	
LTFDTTFSPNTGKK	2	Unmodified	1555.7882	0.7882229	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.89	2	8	9					3	4	7	7	7	5	56.837	53.457	2;3	4.889E-136	45848	160511_QHF_FH_JSI12i_3	293.8	242.53			0.9933	0.98994	12.352	25	2	Median	1.153	0.99346	13.155	6	0	Median	0.91935	1.0613	17.051	7	1	Median	0.97577	0.96956	8.413	7	0	Median	0.95319	0.98093	4.7365	5	1	Median	18323000000	8743200000	9580200000	1711900000	785150000	926780000	3450700000	2043400000	1407200000	5533500000	2418600000	3114900000	7627400000	3496100000	4131300000	34406	1570	32560	211585;211586;211587;211588;211589;211590;211591;211592;211593;211594;211595;211596;211597;211598;211599;211600;211601;211602;211603;211604;211605;211606;211607;211608;211609;211610	285488;285489;285490;285491;285492;285493;285494;285495;285496;285497;285498;285499;285500;285501;285502;285503;285504;285505;285506;285507;285508;285509;285510;285511;285512;285513;285514;285515;285516;285517;285518;285519;285520;285521;285522;285523;285524;285525;285526;285527;285528;285529;285530;285531;285532;285533;285534;285535;285536;285537;285538;285539	285537			52	
LTFEATGPSHMSFYVR	0	Unmodified	1841.8771	0.87705468	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	71.743	71.545	2;3	3.2061E-05	63702	160511_QHF_FH_JSI11i_3	63.691	53.223			1.0908	1.0158	6.3465	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.147	1.0754	NaN	1	0	Median	1.0331	1.0602	8.8992	2	0	Median	307770000	137340000	170430000	0	0	0	0	0	0	105120000	42815000	62303000	202650000	94522000	108130000	34407	3248	32561	211611;211612;211613	285540;285541;285542;285543;285544;285545;285546	285540			7	
LTFEVVNLAR	0	Unmodified	1160.6554	0.65535823	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.878	78.248	2	0.028901	68723	160511_QHF_FH_JSI11i_2	47.603	34.566			0.49413	0.48315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49413	0.48315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49358000	30922000	18436000	0	0	0	0	0	0	49358000	30922000	18436000	0	0	0	34408	2549	32562	211614	285547	285547			1	
LTFGESLMTHAMTFTAVSEK	1	Unmodified	2200.0544	0.054426696	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	96.957	96.81	3	4.2904E-10	83662	160511_QHF_FH_JSI12i_3	113.51	105.04			0.93858	0.94323	13.015	5	0	Median	1.15	0.94323	NaN	1	0	Median	0.67501	0.77853	NaN	1	0	Median	1.0458	0.96281	NaN	1	0	Median	0.82999	0.84022	19.021	2	0	Median	525990000	291250000	234740000	20797000	9344100	11453000	45912000	28399000	17513000	72009000	37207000	34801000	387270000	216300000	170970000	34409	2475	32563	211615;211616;211617;211618;211619	285548;285549;285550;285551;285552;285553;285554;285555;285556;285557;285558	285556			11	
LTFIPGFIGSLK	1	Unmodified	1291.754	0.75400964	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	101.38	101.33	2	1.3996E-10	82137	160511_QHF_FH_JSI9i_3	128.81	109.54			0.98453	1.0098	4.8099	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.8275	0.9386	NaN	1	1	Median	0.98817	0.92228	NaN	1	1	Median	0.98453	1.0098	NaN	1	1	Median	573510000	271290000	302220000	0	0	0	146110000	67587000	78518000	159610000	85515000	74095000	267790000	118190000	149600000	34410	4226	32564	211620;211621;211622;211623;211624;211625	285559;285560;285561;285562;285563;285564	285562			6	
LTFIPSQPFLTALIQIFPALYQHIK	1	Unmodified	2898.6412	0.64115872	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	102.81	94.69	3;4	6.1476E-79	57265	160513_QHF_FH_JSI10Kac_6	215.79	198			1.1797	0.99239	7.1925	5	0	Linear	1.2169	1.0409	5.1982	2	0	Median	0.83579	0.9871	1.7738	2	0	Median	1.2142	1.1616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3160900000	1631300000	1529600000	1241800000	581540000	660290000	1898300000	1038500000	859820000	17138000	7612800	9525400	3615900	3615900	0	34411	3262	32565	211626;211627;211628;211629;211630;211631	285565;285566;285567;285568;285569;285570;285571;285572;285573;285574;285575	285573			11	
LTFISGR	0	Unmodified	792.44939	0.4493882	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	40.249	39.364	2	0.0091338	32168	160511_QHF_FH_JSI9i_3	80.462	17.315			0.94896	0.97619	7.9678	8	0	Median	1.2685	1.041	9.0565	2	0	Median	0.7705	0.91992	3.2622	2	0	Median	1.0205	0.98685	1.5673	2	0	Median	0.86607	0.92754	12.159	2	0	Median	1697700000	856780000	840880000	585160000	233360000	351800000	466460000	260860000	205600000	325740000	176790000	148950000	320310000	185780000	134530000	34412	2596	32566	211632;211633;211634;211635;211636;211637;211638;211639	285576;285577;285578;285579;285580;285581;285582;285583;285584	285579			9	
LTFLDLR	0	Unmodified	876.5069	0.50690308	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	76.18	75.364	2	0.011468	67031	160511_QHF_FH_JSI10i_2	70.912	14.402			1.0624	1.0544	7.0846	8	2	Median	1.263	1.0488	6.3054	2	0	Median	0.85894	0.99905	7.5361	2	0	Median	1.0624	1.0253	4.0464	2	1	Median	1.0758	1.1291	8.4857	2	1	Median	407590000	197950000	209640000	60571000	25921000	34651000	87484000	43562000	43922000	146540000	77647000	68897000	112990000	50816000	62173000	34413	4803	32567	211640;211641;211642;211643;211644;211645;211646;211647	285585;285586;285587;285588;285589;285590	285589			6	
LTFLEEDDK	1	Unmodified	1108.5288	0.52882031	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.029	51.362	2	0.051016	46755	160511_QHF_FH_JSI12i_1	55.064	45.153			0.94941	0.99058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94941	0.99058	NaN	1	0	Median	154140000	98555000	55582000	0	0	0	0	0	0	0	0	0	154140000	98555000	55582000	34414	5119	32568	211648	285591	285591			0	
LTFLNSFK	1	Unmodified	968.53312	0.53311783	3926;5615	Q93050;Q9Y487	ATP6V0A1;ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase 116 kDa subunit a isoform 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	68.8	67.986	2	0.0066395	60372	160511_QHF_FH_JSI11i_3	61.962	25.375			1.0245	0.93772	11.771	4	0	Median	1.073	0.88929	NaN	1	0	Median	0.79716	0.87811	NaN	1	0	Median	1.1755	1.1318	NaN	1	0	Median	0.97811	0.98878	NaN	1	0	Median	215120000	103110000	112010000	35334000	17129000	18205000	30044000	19448000	10596000	64491000	28813000	35678000	85254000	37724000	47529000	34415	3926;5615	32569	211649;211650;211651;211652	285592;285593;285594;285595	285592			4	
LTFLVAQK	1	Unmodified	918.55385	0.55385327	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.35	56.102	2	0.023005	48163	160511_QHF_FH_JSI12i_3	54.549	19.742			1.1738	1.1762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1738	1.1762	NaN	1	1	Median	105360000	63631000	41729000	0	0	0	0	0	0	0	0	0	105360000	63631000	41729000	34416	2348	32570	211653	285596	285596			1	
LTFLYLANDVIQNSK	1	Unmodified	1737.9301	0.93013611	4921;4189	Q96P16;Q9NQG5	RPRD1A;RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1A;Regulation of nuclear pre-mRNA domain-containing protein 1B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	3	4	4	4	96.941	92.457	2;3	1.3888E-138	88172	160511_QHF_FH_JSI12i_3	295.32	260.79			1.0387	1.0045	20.267	15	1	Median	1.0401	0.85435	19.186	3	1	Median	0.85556	1.0187	9.0869	4	0	Median	1.0242	0.96207	19.787	4	0	Median	1.0975	1.1281	16.862	4	0	Median	2358300000	1245800000	1112500000	325840000	166470000	159370000	606700000	317910000	288790000	751090000	416290000	334800000	674680000	345090000	329590000	34417	4189;4921	32571	211654;211655;211656;211657;211658;211659;211660;211661;211662;211663;211664;211665;211666;211667;211668	285597;285598;285599;285600;285601;285602;285603;285604;285605;285606;285607;285608;285609;285610;285611;285612;285613;285614;285615;285616;285617;285618;285619;285620	285612			24	
LTFMDLELK	1	Unmodified	1108.5838	0.58383277	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.928	91.417	2	0.0045543	80320	160511_QHF_FH_JSI11i_2	56.729	46.818			0.9583	0.99947	4.0343	4	0	Median	1.2423	1.0412	NaN	1	0	Median	0.75703	0.97089	NaN	1	0	Median	0.95447	0.96116	NaN	1	0	Median	0.96213	1.0289	NaN	1	0	Median	69729000	33171000	36559000	8411300	3769200	4642100	12463000	7771800	4691600	24557000	11241000	13316000	24298000	10389000	13909000	34418	28	32572	211669;211670;211671;211672	285621;285622	285621			2	
LTFNHDGSSR	0	Unmodified	1132.5261	0.52613497	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	14.38	14.222	2;3	0.010027	11314	160511_QHF_FH_JSI10i_3	33.89	24.533			0.93034	1.0098	12.083	5	0	Median	NaN	NaN	NaN	0	0	Median	0.90684	1.0594	NaN	1	0	Median	1.0241	0.9667	11.482	2	0	Median	0.88279	0.89916	16.406	2	0	Median	307910000	164010000	143900000	0	0	0	43346000	17397000	25949000	132870000	69660000	63211000	131690000	76951000	54740000	34419	4581	32573	211673;211674;211675;211676;211677	285623;285624;285625;285626;285627;285628;285629	285626			7	
LTFNNPTTEFR	0	Unmodified	1338.6568	0.65681479	2201	Q03111	MLLT1	Protein ENL	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.187	60.912	2	0.014509	52510	160511_QHF_FH_JSI12i_3	52.167	31.467			1.1948	1.1917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1948	1.1917	NaN	1	1	Median	156910000	75806000	81106000	0	0	0	0	0	0	0	0	0	156910000	75806000	81106000	34420	2201	32574	211678	285630	285630			1	
LTFNQGGQPFSEVGEVK	1	Unmodified	1835.9054	0.90537792	5355	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	71.992	70.699	2	0.0024776	60960	160511_QHF_FH_JSI12i_2	62.89	41.332			0.69244	0.78243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69244	0.78243	NaN	1	1	Median	11307000	8629200	2678000	0	0	0	0	0	0	0	0	0	11307000	8629200	2678000	34421	5355	32575	211679;211680	285631;285632	285631			2	
LTFPEQSVPGALQFR	0	Unmodified	1688.8886	0.88860564	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							3	2	3	3	86.526	85.975	2;3	9.8443E-05	75582	160511_QHF_FH_JSI11i_2	105.46	64.177			0.82099	0.924	23.507	11	4	Median	1.0497	0.924	20.915	3	2	Median	0.71279	0.86137	15.019	2	1	Median	0.92326	0.95546	17.865	3	0	Median	0.71786	0.78443	40.409	3	1	Median	287840000	157430000	130410000	83046000	45039000	38007000	63357000	39048000	24309000	88877000	45269000	43608000	52559000	28073000	24486000	34422	5734	32576	211681;211682;211683;211684;211685;211686;211687;211688;211689;211690;211691	285633;285634;285635;285636;285637;285638;285639;285640;285641;285642;285643;285644;285645;285646;285647	285643			14	
LTFSCLGGSDNFK	1	Unmodified	1444.6657	0.66566492	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.52	1	4	4					4	3	2	3	5	6	70.614	65.729	2	1.1562E-30	57237	160511_QHF_FH_JSI12i_3	189.58	169.28			1.0318	1.0367	30.293	16	10	Median	1.1797	0.98406	53.191	2	2	Median	1.0724	1.3131	40.632	3	2	Median	0.98923	0.99367	21.564	5	1	Median	1.524	1.6283	21.339	6	5	Linear	6552900000	3144800000	3408100000	73932000	25319000	48613000	947160000	460670000	486480000	2827200000	1473000000	1354200000	2704600000	1185900000	1518700000	34423	2642	32577	211692;211693;211694;211695;211696;211697;211698;211699;211700;211701;211702;211703;211704;211705;211706;211707	285648;285649;285650;285651;285652;285653;285654;285655;285656;285657;285658;285659;285660;285661;285662;285663;285664;285665;285666;285667	285664			20	
LTFSPFQVLSLLLVLQPPPH	0	Unmodified	2245.2875	0.28746182	4990	Q9NTJ4	MAN2C1	Alpha-mannosidase 2C1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		105.19	95.764	3	2.451E-05	54718	160513_QHF_FH_JSI11Kac_6	74.519	69.866			1.1856	1.162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1856	1.162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41996000	19146000	22849000	0	0	0	0	0	0	41996000	19146000	22849000	0	0	0	34424	4990	32578	211708	285668	285668			1	
LTFSVIWTLTPEGK	1	Unmodified	1590.8657	0.86574494	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.198	87.478	2	2.0091E-30	50205	160513_QHF_FH_JSI10Kac_6	170.04	132.86			0.69627	0.81572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69627	0.81572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68957000	30266000	38691000	0	0	0	68957000	30266000	38691000	0	0	0	0	0	0	34425	3465	32579	211709	285669	285669			1	
LTFTAGGAIEFGQR	0	Unmodified	1466.7518	0.75177781	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.494	74.204	2	0.0088692	64430	160511_QHF_FH_JSI12i_3	62.466	28.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34426	3949	32580	211710	285670	285670			1	
LTFVDFLTYDILDQNR	0	Unmodified	1971.9942	0.99419293	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.84		5	2						6	3	3	4	3	101.45	97.672	2;3	4.5238E-139	54972	160513_QHF_FH_JSI10Kac_6	274.8	256.18			1.0432	1.0713	15.842	13	0	Median	1.4032	1.1904	0.94211	3	0	Median	0.90429	1.0713	4.9	3	0	Median	1.0432	1.0332	20.467	4	0	Median	1.2444	1.3023	14.632	3	0	Plateau	6000700000	2950300000	3050500000	1403500000	643570000	759880000	1866600000	1018100000	848540000	1084900000	548160000	536720000	1645800000	740470000	905320000	34427	1188	32581	211711;211712;211713;211714;211715;211716;211717;211718;211719;211720;211721;211722;211723	285671;285672;285673;285674;285675;285676;285677;285678;285679;285680;285681;285682;285683;285684;285685	285684			14	
LTFVGELAHGR	0	Unmodified	1198.6459	0.64585618	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		50.39	49.608	3	0.00040476	41712	160511_QHF_FH_JSI10i_3	65.232	39.293			1.7791	1.8277	5.1552	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5275	1.7623	NaN	1	0	Median	2.0722	1.8956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	139300000	48301000	90995000	0	0	0	67731000	20331000	47400000	71564000	27970000	43594000	0	0	0	34428	5374	32582	211724;211725;211726	285686;285687;285688	285687			3	
LTFYALSHMINNYHK	1	Unmodified	1850.9138	0.91377454	43	CON__ENSEMBL:ENSBTAP00000032840			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	80.143	72.088	3;4	9.0392E-64	40075	160513_QHF_FH_JSI10Kac_6	214.18	199.76		+	0.80043	0.86508	18.544	6	1	Median	1.0237	0.88144	NaN	1	0	Median	0.62526	0.74463	34.743	2	0	Median	0.94066	0.9047	NaN	1	0	Median	0.7344	0.77855	12.256	2	1	Median	1027000000	544090000	482940000	110750000	55474000	55273000	675540000	362650000	312890000	121440000	56289000	65154000	119290000	69673000	49620000	34429	43	32583	211727;211728;211729;211730;211731;211732	285689;285690;285691;285692;285693;285694;285695;285696;285697;285698	285697			10	
LTGADGTPPGFLLK	1	Unmodified	1385.7555	0.7554662	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	71.119	69.337	2	2.0505E-05	61134	160511_QHF_FH_JSI11i_2	124.42	104.09			1.0047	1.0149	6.6899	10	1	Median	1.1798	1.0092	3.9859	3	0	Plateau	0.92568	1.1145	8.0345	2	0	Median	1.0048	1.0041	6.015	2	0	Median	0.89474	1.0025	5.5438	3	1	Median	854460000	428820000	425640000	159840000	75955000	83890000	217440000	113940000	103510000	289140000	142980000	146160000	188040000	95947000	92090000	34430	2198	32584	211733;211734;211735;211736;211737;211738;211739;211740;211741;211742	285699;285700;285701;285702;285703;285704;285705;285706;285707;285708;285709;285710;285711;285712;285713;285714;285715;285716;285717;285718;285719;285720;285721;285722;285723	285719			25	
LTGDAFR	0	Unmodified	778.39735	0.39735263	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	21.783	21.096	2	0.0572	17894	160511_QHF_FH_JSI9i_2	41.502	7.7638			1.129	1.1861	12.478	5	0	Median	1.2387	1.0551	NaN	1	0	Median	0.97503	1.1861	NaN	1	0	Median	1.2049	1.198	20.3	2	0	Median	1.129	1.2912	NaN	1	0	Median	1193700000	602100000	591560000	208440000	98198000	110240000	248790000	138800000	109990000	422780000	212700000	210070000	313660000	152400000	161260000	34431	741	32585	211743;211744;211745;211746;211747	285724	285724			1	
LTGDLSHLAAIVILLLK	1	Unmodified	1789.1077	0.10770654	1407	P33947	KDELR2	ER lumen protein-retaining receptor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	1	1	3		103.08	98.216	3	2.3511E-69	56696	160513_QHF_FH_JSI10Kac_6	199.68	186.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34432	1407	32586	211748;211749;211750;211751;211752	285725;285726;285727;285728;285729	285729			5	
LTGDLSHLAAIVILLLKIWKTR	2	Unmodified	2473.5148	0.51483599	1407	P33947	KDELR2	ER lumen protein-retaining receptor 2	yes	yes	0	0	0	2		By MS/MS			16	0									2		2			101.81	96.088	4;5	6.7239E-29	56765	160513_QHF_FH_JSI10Kac_6	150.53	146			0.52581	0.62712	6.0401	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52581	0.62712	6.0401	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163370000	111370000	51999000	0	0	0	163370000	111370000	51999000	0	0	0	0	0	0	34433	1407	32587	211753;211754	285730;285731	285730			2	
LTGDVEELEIQEK	1	Unmodified	1501.7512	0.75116869	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.656	55.505	2	0.00065748	49262	160511_QHF_FH_JSI9i_1	84.605	61.286			0.47014	0.39114	NaN	1	1	Median	0.47014	0.39114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163370000	140390000	22979000	163370000	140390000	22979000	0	0	0	0	0	0	0	0	0	34434	5366	32588	211755	285732	285732			1	
LTGDVLQPPGTSVPIVK	1	Unmodified	1719.9771	0.9770863	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	75.583	74.853	2	0.0023958	68251	160511_QHF_FH_JSI12i_1	53.967	44.123			1.3562	1.2162	43.56	2	0	Median	1.1068	0.89378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.662	1.6549	NaN	1	0	Median	36687000	17091000	19596000	20480000	11173000	9306900	0	0	0	0	0	0	16207000	5918000	10289000	34435	5481	32589	211756;211757	285733;285734	285733			2	
LTGEVVALK	1	Unmodified	928.55933	0.55933258	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	2	2	43.95	41.698	2	0.0027291	37576	160511_QHF_FH_JSI11i_1	63.419	28.063			1.4472	1.4231	15.239	7	1	Median	1.919	1.6428	26.309	2	0	Median	1.0854	1.2599	NaN	1	0	Median	1.3744	1.3526	7.1794	2	0	Median	1.4161	1.5221	1.7518	2	1	Median	502960000	247920000	255040000	108520000	52254000	56261000	103690000	52162000	51533000	107250000	56302000	50952000	183500000	87200000	96299000	34436	1252	32590	211758;211759;211760;211761;211762;211763;211764	285735;285736;285737;285738;285739;285740	285735			5	
LTGGAAGHQDR	0	Unmodified	1081.5265	0.52646932	670	O95274	LYPD3	Ly6/PLAUR domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.711	3	8	7							3	5	5	5	5.0588	4.7759	2;3	9.5164E-08	2526	160511_QHF_FH_JSI12i_3	100.93	69.702			0.96615	0.94817	19.251	18	0	Median	1.1415	0.91622	6.6618	3	0	Median	0.7717	0.89596	18.852	5	0	Median	1.1821	1.1221	15.466	5	0	Median	0.82634	0.84217	17.055	5	0	Median	8038500000	4311700000	3726800000	1655800000	818360000	837470000	2314200000	1349400000	964720000	1716400000	838110000	878250000	2352200000	1305800000	1046300000	34437	670	32591	211765;211766;211767;211768;211769;211770;211771;211772;211773;211774;211775;211776;211777;211778;211779;211780;211781;211782	285741;285742;285743;285744;285745;285746;285747;285748;285749;285750;285751;285752;285753	285753			13	
LTGIKHELQANCYEEVK	2	Acetyl (K)	2073.0201	0.0200901	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.108	54.423	3	0.00052811	29516	160513_QHF_FH_JSI11Kac_6	115.57	106.16			0.15902	0.15322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15902	0.15322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10977000	10448000	528300	0	0	0	0	0	0	10977000	10448000	528300	0	0	0	34438	1236	32592	211783	285754	285754	1126;1128		1	
LTGMAFR	0	Unmodified	794.41089	0.4108942	812	P04406;O14556	GAPDH;GAPDHS	Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.17	3	8	7				2	3	4	4	7	8	8	38.626	34.928	1;2	4.4352E-08	29521	160511_QHF_FH_JSI12i_3	163.84	103.44			0.95852	0.98974	33.581	27	1	Median	1.1666	1.3312	18.107	4	0	Linear	0.80999	0.95309	18.456	7	0	Median	0.96292	0.96922	8.0459	8	0	Median	0.95003	1.0147	58.27	8	1	Median	99776000000	43690000000	56087000000	26410000000	10423000000	15987000000	28774000000	13188000000	15586000000	23254000000	10997000000	12257000000	21338000000	9080800000	12257000000	34439	812	32593	211784;211785;211786;211787;211788;211789;211790;211791;211792;211793;211794;211795;211796;211797;211798;211799;211800;211801;211802;211803;211804;211805;211806;211807;211808;211809;211810	285755;285756;285757;285758;285759;285760;285761;285762;285763;285764;285765;285766;285767;285768;285769;285770;285771;285772;285773;285774;285775;285776;285777;285778;285779;285780;285781;285782;285783;285784;285785;285786;285787;285788;285789;285790;285791;285792;285793;285794;285795;285796;285797	285790			43	
LTGMAFR	0	Oxidation (M)	810.40581	0.40580882	812	P04406;O14556	GAPDH;GAPDHS	Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.15	6.49		5	1				1	4	2	5	2	3	3	29.19	23.762	2	0.012252	9826	160513_QHF_FH_JSI10Kac_5	74.717	54.871			1.1823	1.1024	47.81	13	0	Median	1.2968	1.1171	40.619	5	0	Median	0.80303	0.96354	2.2675	2	0	Median	1.8529	1.847	67.823	3	0	Plateau	1.1823	1.2973	62.476	3	0	Median	7896900000	3423400000	4473600000	5709000000	2454800000	3254200000	99619000	57547000	42072000	1142700000	389910000	752750000	945690000	521160000	424540000	34440	812	32593	211811;211812;211813;211814;211815;211816;211817;211818;211819;211820;211821;211822;211823	285798;285799;285800;285801;285802;285803;285804;285805;285806	285805		331	9	
LTGPALQWVIPYIK	1	Unmodified	1597.9232	0.92320023	34	A6ZKI3;Q17RB0	FAM127A;FAM127C	Protein FAM127A;Protein FAM127C	yes	no	0	0	0	0		By MS/MS			3	0			2								2			101.77	101.62	2	8.1514E-10	84286	160511_QHF_FH_JSI10i_3	106.29	78.962			0.83106	0.95137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83106	0.95137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59876000	31505000	28371000	0	0	0	59876000	31505000	28371000	0	0	0	0	0	0	34441	34	32594	211824;211825	285807;285808	285808			2	
LTGPSHSK	1	Unmodified	825.43447	0.43446642	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0			By matching	By MS/MS	2.33	0.471		2	1									1	2	5.5826	5.3546	2	0.059648	2652	160511_QHF_FH_JSI12i_3	35.152	10.154			0.95232	1.3471	18.235	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3442	1.3602	NaN	1	0	Median	0.94386	0.99916	5.5274	2	0	Median	360470000	157680000	202790000	0	0	0	0	0	0	175800000	77205000	98594000	184670000	80476000	104200000	34442	3318	32595	211826;211827;211828	285809	285809			1	
LTGQALIPGSVIYHK	1	Unmodified	1595.9035	0.90352742	4030	Q96DP5	MTFMT	Methionyl-tRNA formyltransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	65.143	64.249	3	0.0064801	53858	160511_QHF_FH_JSI10i_3	40.857	36.008			1.115	1.2009	34.923	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82924	0.93811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4993	1.5372	NaN	1	0	Median	89332000	43966000	45366000	0	0	0	23223000	15343000	7880300	0	0	0	66109000	28624000	37486000	34443	4030	32596	211829;211830	285810	285810			1	
LTGQLFLGGSIVK	1	Unmodified	1331.7813	0.78128702	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	2	3	4	3	79.316	77.106	2;3	3.2342E-15	67843	160511_QHF_FH_JSI12i_3	158.04	117.01			1.0737	1.0729	59.123	12	4	Median	1.292	1.0978	0.013317	2	0	Median	0.87845	0.98605	109.79	3	1	Plateau	1.1544	1.135	12.122	4	2	Median	1.0373	1.0486	22.133	3	1	Median	1460000000	678200000	781750000	156660000	66471000	90185000	172920000	89895000	83022000	408030000	181870000	226160000	722350000	339960000	382390000	34444	2374	32597	211831;211832;211833;211834;211835;211836;211837;211838;211839;211840;211841;211842	285811;285812;285813;285814;285815;285816;285817;285818;285819;285820;285821;285822;285823;285824;285825;285826;285827	285824			17	
LTGSASTAK	1	Unmodified	834.4447	0.44469675	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1.33	0.471	4	2								2	1	2	1	5.9227	5.6049	2	0.01177	3660	160511_QHF_FH_JSI12i_1	48.423	27.123			0.86026	0.84278	18.721	6	0	Median	1.0677	0.90607	12.21	2	0	Median	0.84027	0.99391	NaN	1	0	Median	0.72624	0.71372	25.476	2	0	Median	0.75702	0.79358	NaN	1	0	Median	733250000	410820000	322430000	169760000	87743000	82015000	173350000	99464000	73889000	189430000	108500000	80937000	200710000	115120000	85589000	34445	1148	32598	211843;211844;211845;211846;211847;211848	285828;285829	285828			2	
LTGSLSGWSSPK	1	Unmodified	1218.6245	0.62445203	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	51.285	47.031	2	1.8355E-15	24868	160513_QHF_FH_JSI9Kac_6	135.66	98.187			0.95861	1.0381	21.056	13	1	Median	0.96646	0.81112	14.492	4	0	Linear	0.94032	1.1213	31.701	3	1	Median	0.92852	0.90478	18.863	3	0	Median	0.95861	1.0735	4.0036	3	0	Plateau	3327600000	1600900000	1726800000	340120000	163940000	176180000	480450000	254630000	225820000	1076400000	500260000	576170000	1430700000	682020000	748630000	34446	4315	32599	211849;211850;211851;211852;211853;211854;211855;211856;211857;211858;211859;211860;211861	285830;285831;285832;285833;285834;285835;285836;285837;285838;285839;285840;285841;285842;285843;285844;285845;285846	285841			17	
LTGSSAQEEASGVALGEAPDHSYESLR	0	Unmodified	2760.2838	0.2838456	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	58.557	57.899	3	1.0831E-82	51112	160511_QHF_FH_JSI10i_2	233.19	215.1			1.0991	1.1294	6.4658	10	1	Median	1.4041	1.1801	5.7441	2	0	Median	0.95438	1.1474	13.138	2	0	Median	1.1001	1.1256	4.5603	3	1	Median	0.9836	1.0949	6.0231	3	0	Plateau	3178100000	1432500000	1745600000	554720000	218770000	335950000	734350000	335150000	399200000	1071000000	473440000	597530000	818090000	405120000	412960000	34447	2340	32600	211862;211863;211864;211865;211866;211867;211868;211869;211870;211871	285847;285848;285849;285850;285851;285852;285853;285854;285855;285856;285857;285858;285859;285860;285861;285862;285863;285864;285865;285866	285864			20	
LTGSVLEDAWK	1	Unmodified	1217.6292	0.62920306	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		1	2	3	2	67.279	65.167	2	0.00014148	56081	160511_QHF_FH_JSI12i_2	83.862	61.122			0.73828	0.85018	35.505	7	1	Median	NaN	NaN	NaN	0	0	Median	0.7118	0.85418	0.66423	2	0	Median	0.69968	0.71196	53.357	3	1	Plateau	0.70297	0.74944	13.204	2	0	Median	1492400000	777290000	715080000	0	0	0	443350000	224600000	218740000	568850000	304680000	264170000	480170000	248010000	232160000	34448	4619	32601	211872;211873;211874;211875;211876;211877;211878;211879	285867;285868;285869;285870;285871;285872;285873;285874	285869			8	
LTGSYNTMVGNNEGSMVLGLK	1	Unmodified	2184.0555	0.055489329	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	3	1	1	78.309	77.611	2;3	4.1352E-36	68451	160511_QHF_FH_JSI9i_2	189.69	161.82			0.98912	1.0697	15.84	7	1	Median	1.0243	0.88476	13.701	2	0	Median	0.98912	1.1231	7.6325	3	1	Median	0.88739	0.88299	NaN	1	0	Median	1.0728	1.1771	NaN	1	0	Median	183830000	95092000	88736000	46988000	19489000	27499000	82596000	49996000	32600000	32553000	13125000	19428000	21691000	12482000	9209500	34449	5645	32602	211880;211881;211882;211883;211884;211885;211886	285875;285876;285877;285878;285879;285880;285881;285882;285883;285884;285885;285886	285881			12	
LTGTANK	1	Unmodified	703.38645	0.38645359	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	2	2	3	4.9319	4.6371	2	0.010853	2587	160511_QHF_FH_JSI10i_1	73.039	41.749			0.9334	0.88722	24.741	9	0	Median	1.2389	1.0328	33.945	2	0	Median	1.1461	1.3597	19.68	2	0	Median	0.9453	0.93916	15.639	2	0	Median	0.82818	0.88227	6.0216	3	0	Plateau	5339200000	2817100000	2522200000	432690000	193510000	239190000	1591000000	856180000	734850000	1719100000	861740000	857330000	1596400000	905640000	690800000	34450	939	32603	211887;211888;211889;211890;211891;211892;211893;211894;211895	285887;285888;285889;285890;285891;285892;285893;285894	285891			8	
LTGVFAPR	0	Unmodified	859.49159	0.49158736	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	39.474	38.675	2	0.0018874	31671	160511_QHF_FH_JSI9i_3	84.244	37.58			0.64277	0.67132	30.935	4	0	Median	1.3393	1.0812	NaN	1	0	Median	0.68642	0.77759	NaN	1	0	Median	0.6019	0.55387	NaN	1	0	Median	0.58158	0.57957	NaN	1	0	Median	3141400000	1940400000	1201000000	778800000	359030000	419780000	732980000	464110000	268880000	745310000	521360000	223950000	884300000	595870000	288430000	34451	2013;1204	32604	211896;211897;211898;211899	285895;285896;285897;285898;285899;285900	285899			6	
LTGVFAPRPSTGPHK	1	Unmodified	1563.8522	0.85216056	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	3	1	1	38.931	31.166	3;4	0.0012792	17372	160513_QHF_FH_JSI10Kac_6	57.288	43.87			0.89393	0.94943	9.9746	6	0	Median	1.0933	0.95557	NaN	1	0	Median	0.8441	0.97216	15.656	3	0	Median	0.93323	0.94332	NaN	1	0	Median	0.85628	0.9415	NaN	1	0	Median	178400000	95518000	82877000	36839000	16111000	20727000	120640000	68788000	51848000	7466000	3168700	4297300	13455000	7450600	6004700	34452	2013;1204	32605	211900;211901;211902;211903;211904;211905	285901;285902;285903;285904;285905;285906;285907;285908;285909;285910	285909			10	
LTGVIVENENITK	1	Unmodified	1428.7824	0.78240924	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.336	51.809	2	0.00097443	44738	160511_QHF_FH_JSI11i_2	77.305	55.736			1.1953	1.1272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1953	1.1272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16213000	3349600	12864000	0	0	0	0	0	0	16213000	3349600	12864000	0	0	0	34453	3653	32606	211906;211907	285911;285912	285912			2	
LTGVSISQVNHK	1	Unmodified	1281.7041	0.70409934	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	2	1	3	35.666	31.876	2;3	2.346E-11	26389	160511_QHF_FH_JSI10i_3	145.23	114.68			0.80615	0.91532	43.699	8	2	Median	0.93486	0.77927	21.855	2	0	Median	0.80615	0.93862	2.652	2	0	Median	1.216	1.1623	NaN	1	1	Median	0.60876	0.6167	76.713	3	1	Median	966930000	530240000	436700000	160790000	77092000	83703000	305320000	166850000	138470000	18428000	9588700	8839200	482390000	276710000	205680000	34454	590	32607	211908;211909;211910;211911;211912;211913;211914;211915	285913;285914;285915;285916;285917;285918;285919;285920;285921;285922	285913			9	
LTHAAPCMLFMK	1	Unmodified	1418.6873	0.68726876	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	58.982	57.875	3	2.812E-05	49678	160511_QHF_FH_JSI12i_3	86.313	75.407			1.2338	1.2612	45.858	3	1	Plateau	0.73543	0.59772	NaN	1	1	Median	1.1814	1.377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2338	1.2612	NaN	1	0	Median	385550000	160610000	224930000	26782000	17738000	9043700	62465000	27398000	35067000	0	0	0	296300000	115480000	180820000	34455	595	32608	211916;211917;211918;211919	285923;285924;285925;285926	285926			4	
LTHDVELNLDYER	0	Unmodified	1615.7842	0.78420015	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	2	5	52.191	51.364	2;3	4.6863E-06	44041	160511_QHF_FH_JSI12i_2	126.19	96.721			1.0062	1.0509	20.167	10	1	Median	0.92359	0.79767	10.527	2	1	Median	0.70888	0.86032	5.993	2	0	Median	1.0845	1.0934	10.866	2	0	Median	1.1218	1.1977	11.193	4	0	Median	997490000	498780000	498710000	151400000	78191000	73210000	226310000	128030000	98281000	295370000	147150000	148220000	324400000	145410000	179000000	34456	793	32609	211920;211921;211922;211923;211924;211925;211926;211927;211928;211929;211930	285927;285928;285929;285930;285931;285932;285933;285934;285935;285936;285937;285938;285939;285940;285941;285942	285928			16	
LTHELPGIK	1	Unmodified	1006.5811	0.58113065	4650	Q9H147	DNTTIP1	Deoxynucleotidyltransferase terminal-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	31.795	30.915	3	0.020132	26227	160511_QHF_FH_JSI12i_2	28.727	19.513			0.95218	0.99393	18.318	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0872	1.3147	NaN	1	1	Median	0.95218	0.99393	NaN	1	0	Median	0.8539	0.93137	NaN	1	0	Median	55931000	25856000	30076000	0	0	0	14880000	5746600	9133600	22421000	11340000	11081000	18629000	8768800	9860600	34457	4650	32610	211931;211932;211933	285943;285944	285943			2	
LTHGVLHTK	1	Unmodified	1004.5767	0.57671398	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	8.7891	8.5163	2	0.0037462	6563	160511_QHF_FH_JSI9i_3	58.981	28.796			1.1759	1.0625	0.91811	2	1	Median	1.295	1.0556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0679	1.0694	NaN	1	1	Median	127060000	57607000	69450000	37942000	17207000	20734000	0	0	0	0	0	0	89116000	40400000	48715000	34458	3401	32611	211934;211935;211936	285945;285946;285947	285946			3	
LTHKMEANK	2	Acetyl (K);Oxidation (M)	1128.5597	0.55974328	1105	P16949	STMN1	Stathmin	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	2	2	6.2423	-2.3311	3	0.0012435	2200	160513_QHF_FH_JSI11Kac_5	73.885	57.747			0.47112	0.52526	72.711	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2422	1.4824	1.4692	2	0	Median	0.30796	0.2997	2.0363	2	0	Median	0.47112	0.52526	10.726	2	0	Median	68885000	45793000	23093000	0	0	0	11796000	4514500	7281200	42663000	31614000	11049000	14427000	9664000	4762800	34459	1105	32612	211937;211938;211939;211940;211941;211942	285948;285949;285950;285951;285952	285949	962	746	5	
LTHKMEANK	2	Acetyl (K)	1112.5648	0.56482866	1105	P16949	STMN1	Stathmin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								4	10	1	4	6	3	13.413	5.0659	2;3	0.00044564	5406	160513_QHF_FH_JSI11Kac_5	87.258	63.885			102.62	122.39	190.26	3	3	Plateau	NaN	NaN	NaN	0	0	Median	31.106	36.522	182.12	2	2	Median	3.3004	3.2291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	276200000	208500000	67707000	6087100	6087100	0	43381000	22316000	21066000	202770000	161530000	41240000	23971000	18569000	5401900	34460	1105	32612	211943;211944;211945;211946;211947;211948;211949;211950;211951;211952;211953;211954;211955;211956	285953;285954;285955;285956;285957;285958;285959;285960;285961;285962;285963;285964;285965;285966	285958	962		14	
LTHLHEGLPVK	1	Unmodified	1242.7085	0.70845643	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			7									3	4	27.098	27.079	2;3	0.0022192	22438	160511_QHF_FH_JSI12i_3	48.568	39.135			1.4082	1.4502	81.842	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92354	0.8576	124.6	2	1	Median	1.4082	1.4502	42.529	2	1	Median	394340000	158630000	235720000	0	0	0	0	0	0	174710000	59507000	115200000	219630000	99118000	120510000	34461	140	32613	211957;211958;211959;211960;211961;211962;211963	285967;285968;285969;285970;285971;285972;285973	285969			7	
LTHNEFTITHVIVPK	1	Unmodified	1747.9621	0.96210494	4071	Q96FJ0	STAMBPL1	AMSH-like protease	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.256	56.132	4	0.0023074	48173	160511_QHF_FH_JSI12i_3	55.656	44.394			1.2313	1.1819	5.033	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3318	1.2247	NaN	1	1	Median	1.1384	1.1406	NaN	1	1	Median	159990000	72519000	87472000	0	0	0	0	0	0	69401000	29151000	40250000	90590000	43368000	47222000	34462	4071	32614	211964;211965	285974;285975	285975			2	
LTHVDSPLEAPAGPLGQVK	1	Unmodified	1928.0367	0.036726442	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							3	2	4	3	63.979	63.228	2;3	1.0291E-10	55647	160511_QHF_FH_JSI9i_2	102.66	71.789			0.98675	0.95902	15.047	10	2	Median	1.0506	0.89297	1.4812	2	1	Median	0.83599	1.045	20.312	2	0	Median	0.92781	0.92625	18.693	3	1	Median	0.98338	1.0371	11.68	3	0	Plateau	1416400000	696840000	719570000	182500000	80818000	101680000	261910000	155690000	106230000	601700000	272130000	329580000	370300000	188210000	182090000	34463	4399	32615	211966;211967;211968;211969;211970;211971;211972;211973;211974;211975;211976;211977	285976;285977;285978;285979;285980;285981;285982;285983;285984;285985;285986;285987;285988;285989;285990;285991;285992;285993;285994;285995;285996	285986			21	
LTHVLTGK	1	Unmodified	867.5178	0.51780212	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	1	2	3	2	15.269	13.062	3	0.00059518	10752	160511_QHF_FH_JSI11i_3	85.676	74.511			1.58	1.5499	118.3	8	6	Median	1.7732	1.4233	NaN	1	0	Median	1.1223	1.3095	35.896	2	1	Median	2.023	1.9902	200.63	3	3	Median	0.92146	0.93703	120.58	2	2	Median	4536900000	2455000000	2082000000	635090000	304210000	330880000	793950000	501490000	292460000	875510000	465990000	409530000	2232400000	1183300000	1049100000	34464	4862	32616	211978;211979;211980;211981;211982;211983;211984;211985	285997;285998;285999;286000;286001;286002;286003;286004;286005	285997			9	
LTHYDHVLIELTQAGLK	1	Unmodified	1950.0575	0.057461885	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	1	2	2	4	85.193	80.872	3	7.8747E-31	77425	160511_QHF_FH_JSI11i_3	157.03	141.88			1.1377	1.2062	43.456	8	1	Median	0.79318	0.6789	NaN	1	1	Median	0.60565	0.71443	65.007	2	0	Median	1.2087	1.1451	20.654	2	0	Median	1.2756	1.286	16.97	3	0	Plateau	807110000	456400000	350710000	153320000	76373000	76945000	400080000	289480000	110600000	110940000	38647000	72293000	142770000	51902000	90871000	34465	2545	32617	211986;211987;211988;211989;211990;211991;211992;211993;211994	286006;286007;286008;286009;286010;286011;286012;286013;286014;286015;286016;286017	286008			12	
LTHYHEGLPTTR	0	Unmodified	1423.7208	0.72081203	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				21.76	20.49	3	0.061564	16416	160511_QHF_FH_JSI9i_3	17.402	10.2			1.0553	0.85724	NaN	1	1	Median	1.0553	0.85724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29407000	13207000	16200000	29407000	13207000	16200000	0	0	0	0	0	0	0	0	0	34466	2194	32618	211995	286018	286018			1	
LTIAEER	0	Unmodified	830.44978	0.44978213	2013	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.66		4					2			1	2	2	1	26.337	22.666	2	0.0062314	18975	160511_QHF_FH_JSI12i_2	91.906	20.994			0.84284	0.89612	15.622	6	0	Median	1.5251	1.2675	NaN	1	0	Median	0.6995	0.84656	7.111	2	0	Median	0.88742	0.90223	2.8316	2	0	Median	0.80687	0.90207	NaN	1	0	Median	2046200000	1092300000	953900000	426250000	188040000	238210000	423720000	238720000	185000000	768210000	415850000	352360000	427970000	249650000	178320000	34467	2013	32619	211996;211997;211998;211999;212000;212001	286019;286020;286021;286022;286023;286024;286025;286026	286020			8	
LTIAEERDK	1	Unmodified	1073.5717	0.57168818	2013	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	5.82		5	5				1	4		3	5	3	4	20.146	16.641	2;3	1.0781E-05	13669	160511_QHF_FH_JSI12i_3	131.44	86.992			1.001	1.1678	28.008	15	1	Median	1.1129	0.922	23.186	3	0	Median	1.0095	1.2444	24.229	5	1	Median	1.2936	1.2302	15.951	3	0	Plateau	0.77836	0.83384	5.8213	4	0	Median	11614000000	6051600000	5562800000	480010000	218340000	261660000	2326400000	975030000	1351400000	4414000000	2322300000	2091700000	4394000000	2535900000	1858100000	34468	2013	32620	212002;212003;212004;212005;212006;212007;212008;212009;212010;212011;212012;212013;212014;212015;212016	286027;286028;286029;286030;286031;286032;286033;286034;286035;286036;286037;286038;286039;286040;286041;286042;286043;286044;286045;286046;286047;286048	286046			22	
LTIAFQAK	1	Unmodified	890.52255	0.52255314	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.237	51.852	2	0.023005	44320	160511_QHF_FH_JSI12i_2	54.549	34.267			0.94356	1.0262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94356	1.0262	NaN	1	1	Median	83332000	35525000	47807000	0	0	0	0	0	0	0	0	0	83332000	35525000	47807000	34469	543	32621	212017	286049	286049			1	
LTIEFTEEYPNKPPTVR	1	Unmodified	2033.047	0.046956778	1662	P49459	UBE2A	Ubiquitin-conjugating enzyme E2 A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		67.942	67.942	3	0.0001349	60536	160511_QHF_FH_JSI11i_3	78.021	58.468			0.63153	0.60554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63153	0.60554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	233650000	144360000	89293000	0	0	0	0	0	0	233650000	144360000	89293000	0	0	0	34470	1662	32622	212018	286050	286050			1	
LTIGSNLSIR	0	Unmodified	1072.6241	0.6240581	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			60.286	58.759	2	0.0027858	48233	160511_QHF_FH_JSI9i_3	69.598	27.946			0.98189	0.94636	5.4978	2	0	Median	1.205	0.98387	NaN	1	0	Median	0.80008	0.91027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269400000	135550000	133860000	121640000	50930000	70715000	147760000	84619000	63140000	0	0	0	0	0	0	34471	1024	32623	212019;212020	286051;286052;286053	286053			3	
LTIHAENPDSQAVPSAAGAASGEK	1	Unmodified	2320.1295	0.12951721	593	O75970	MPDZ	Multiple PDZ domain protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	45.773	45.532	3	2.4655E-05	38906	160511_QHF_FH_JSI12i_3	53.747	45.943			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9154000	9154000	0	0	0	0	0	0	0	0	0	0	9154000	9154000	0	34472	593	32624	212021;212022	286054;286055	286055			2	
LTIHAPPQELGPPVQR	0	Unmodified	1751.9683	0.96825295	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			57.218	56.068	3	0.00015045	46654	160511_QHF_FH_JSI10i_3	65.107	59.447			0.93535	0.91642	13.754	3	0	Median	1.0812	0.91642	NaN	1	0	Median	0.78972	0.94614	19.276	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	314680000	158720000	155960000	95024000	42009000	53015000	219660000	116710000	102950000	0	0	0	0	0	0	34473	1016	32625	212023;212024;212025	286056;286057;286058;286059	286056			2	
LTIHGDLYYEGK	1	Unmodified	1407.7034	0.70343063	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		2							6	1	2	2	3	54.724	46.979	2;3	0.00017717	40550	160511_QHF_FH_JSI12i_2	58.487	36.441			0.90781	0.9637	24.674	5	0	Median	0.90781	0.77278	NaN	1	0	Median	0.7908	0.9637	NaN	1	0	Median	1.3166	1.2937	NaN	1	0	Median	0.79381	0.86246	29.631	2	0	Median	168030000	86413000	81621000	26646000	12146000	14500000	27144000	15225000	11919000	20204000	8815600	11388000	94039000	50226000	43813000	34474	2412	32626	212026;212027;212028;212029;212030;212031;212032;212033	286060;286061;286062;286063;286064;286065;286066;286067;286068;286069;286070;286071	286060			12	
LTIPILYVK	1	Unmodified	1058.674	0.67396841	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	2	2	1	91.456	89.937	2	0.00073521	79921	160511_QHF_FH_JSI12i_2	75.109	75.109			0.94708	0.94186	14.999	5	0	Median	1.0219	0.90266	NaN	1	0	Median	0.94566	1.1231	1.0902	2	0	Median	0.94708	0.94186	NaN	1	0	Median	0.74971	0.79238	NaN	1	0	Median	121760000	63021000	58735000	16457000	6362200	10095000	49693000	26757000	22936000	32048000	16904000	15144000	23559000	12998000	10561000	34475	1688	32627	212034;212035;212036;212037;212038;212039	286072;286073;286074;286075;286076;286077;286078;286079	286072			8	
LTIQGLK	1	Unmodified	771.48544	0.48543935	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.422	42.422	2	0.049637	37317	160511_QHF_FH_JSI11i_3	47.75	17.943			0.29445	0.27664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29445	0.27664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	947730000	816860000	130860000	0	0	0	0	0	0	947730000	816860000	130860000	0	0	0	34476	4315	32628	212040	286080	286080			1	
LTIQNRQAQIEVVPSASALIIK	1	Unmodified	2391.3849	0.38494403	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			85.109	83.878	3	0.0015813	70265	160511_QHF_FH_JSI10i_3	46.702	33.514			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7712800	3708700	4004100	4004100	0	4004100	3708700	3708700	0	0	0	0	0	0	0	34477	1340	32629	212041;212042;212043	286081;286082;286083	286081			3	
LTISNGPK	1	Unmodified	828.47052	0.47051757	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.924	20.601	2	0.014795	16911	160511_QHF_FH_JSI11i_2	51.059	21.253			0.62698	0.62811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62698	0.62811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80215000	39833000	40382000	0	0	0	0	0	0	80215000	39833000	40382000	0	0	0	34478	2567	32630	212044	286084	286084			1	
LTISPDYAYGATGHPGIIPPHATLVFDVELLK	1	Unmodified	3404.802	0.80202905	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	92.782	84.775	4	4.3789E-57	45409	160513_QHF_FH_JSI12Kac_6	163.17	136.84			0.866	0.79592	31.354	3	1	Median	0.866	0.74767	NaN	1	1	Median	0.6816	0.79592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2382	1.3242	NaN	1	0	Median	349720000	188250000	161470000	68679000	28721000	39958000	195530000	117680000	77858000	0	0	0	85513000	41856000	43657000	34479	2041	32631	212045;212046;212047	286085;286086;286087;286088;286089	286086			5	
LTISSPLEAHK	1	Unmodified	1194.6608	0.66083754	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	46.574	45.759	2;3	4.5137E-06	38893	160511_QHF_FH_JSI12i_3	97.734	68.776			0.97942	0.9355	14.764	9	0	Median	1.0372	0.86256	8.1718	2	0	Median	0.78758	0.94458	0.41235	2	0	Median	0.97942	0.9355	18.037	3	0	Median	1.0087	1.0823	22.125	2	0	Median	2300700000	1305300000	995350000	289470000	154700000	134770000	360320000	216380000	143950000	841330000	459250000	382080000	809570000	475020000	334550000	34480	2665	32632	212048;212049;212050;212051;212052;212053;212054;212055;212056	286090;286091;286092;286093;286094;286095;286096;286097;286098;286099;286100;286101;286102;286103;286104;286105	286103			15	
LTITFPAMVHR	0	Unmodified	1284.7013	0.70126256	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			75.337	72.288	3	2.935E-05	61309	160511_QHF_FH_JSI10i_3	84.658	77.77			0.81511	0.95346	6.8327	3	1	Plateau	0.99681	0.8336	NaN	1	1	Median	0.79416	0.93201	3.2183	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81616000	49486000	32130000	15932000	7473000	8458800	65684000	42013000	23671000	0	0	0	0	0	0	34481	708	32633	212057;212058;212059	286106;286107;286108	286106			3	
LTITQFMNHPWINQSMVVPQTPLHTAR	0	Unmodified	3159.611	0.61101435	2750	Q16644	MAPKAPK3	MAP kinase-activated protein kinase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		88.951	81.423	4	3.8667E-28	46594	160513_QHF_FH_JSI10Kac_6	121.3	103.36			1.1974	1.2922	0.69641	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0904	1.2986	NaN	1	0	Median	1.3149	1.2858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	451390000	195960000	255420000	0	0	0	410950000	185180000	225770000	40435000	10780000	29655000	0	0	0	34482	2750	32634	212060;212061	286109;286110	286110			2	
LTIVNTVGFGDQINK	1	Unmodified	1617.8726	0.87262123	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		2	2	75.321	74.335	2;3	3.018E-06	65283	160511_QHF_FH_JSI11i_2	121.02	90.149			1.037	1.1148	18.796	4	1	Median	1.4857	1.2485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.126	1.1763	NaN	1	1	Median	0.82776	0.92858	18.25	2	0	Median	75541000	33682000	41859000	22623000	7836300	14787000	0	0	0	22380000	12255000	10126000	30538000	13591000	16947000	34483	5192	32635	212062;212063;212064;212065;212066	286111;286112;286113;286114;286115;286116;286117;286118	286118			8	
LTIVSTVGFGDQINK	1	Unmodified	1590.8617	0.86172219	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.26	75.984	2	1.7777E-11	65980	160511_QHF_FH_JSI12i_3	106.01	81.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34484	2498	32636	212067	286119	286119			1	
LTIYDARPSVNAVANK	1	Unmodified	1730.9315	0.93153309	2426	Q13496	MTM1	Myotubularin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			55.186	53.622	3	0.00014417	43979	160511_QHF_FH_JSI9i_3	70.281	51.868			0.78477	0.76714	12.742	2	0	Median	1.0045	0.83947	NaN	1	0	Median	0.61308	0.70104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70113000	37530000	32583000	34957000	15044000	19913000	35156000	22486000	12670000	0	0	0	0	0	0	34485	2426	32637	212068;212069	286120;286121	286121			2	
LTIYDWDR	0	Unmodified	1080.524	0.52400971	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		66.675	65.981	2	0.0051794	57525	160511_QHF_FH_JSI11i_2	66.429	66.429			0.74126	0.82395	20.185	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59397	0.71435	NaN	1	0	Median	0.92508	0.95036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231680000	138240000	93440000	0	0	0	74127000	46471000	27656000	157550000	91769000	65783000	0	0	0	34486	5161	32638	212070;212071	286122	286122			1	
LTIYDWDRLTK	1	Unmodified	1422.7507	0.75071518	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	75.942	75.163	3	0.00033281	65003	160511_QHF_FH_JSI12i_3	68.44	53.754			1.0764	1.1029	29.913	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2819	1.5109	33.843	2	0	Median	1.1354	1.0227	NaN	1	0	Median	1.0204	1.0187	NaN	1	0	Median	128780000	64176000	64603000	0	0	0	18724000	7371400	11352000	48460000	24711000	23749000	61595000	32094000	29501000	34487	5161	32639	212072;212073;212074;212075	286123;286124;286125;286126	286125			4	
LTIYTTLVGLLNAR	0	Unmodified	1546.9083	0.90827845	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			96.543	89.707	2;3	3.7153E-33	52570	160513_QHF_FH_JSI10Kac_6	208.56	163.42			0.83979	0.87469	50.735	3	3	Median	1.006	0.87469	NaN	1	1	Median	0.52825	0.62452	66.268	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1795700000	1376500000	419190000	272230000	182810000	89421000	1523500000	1193700000	329770000	0	0	0	0	0	0	34488	2284	32640	212076;212077;212078	286127;286128;286129	286129			3	
LTLADIER	0	Unmodified	929.5182	0.51819605	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.218	56.873	2	0.031143	48806	160511_QHF_FH_JSI12i_2	41.429	5.2439			0.89394	0.97518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89394	0.97518	NaN	1	0	Median	31071000	18183000	12888000	0	0	0	0	0	0	0	0	0	31071000	18183000	12888000	34489	562	32641	212079	286130	286130			1	
LTLAELNQILYR	0	Unmodified	1445.8242	0.82421447	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	101.34	101.22	2	4.3768E-06	87057	160511_QHF_FH_JSI12i_2	123.86	107.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34490	1435	32642	212080;212081	286131;286132	286131			2	
LTLDKLDVK	2	Acetyl (K)	1085.6332	0.6332258	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	75.415	64.826	2	0.037397	34748	160513_QHF_FH_JSI12Kac_4	55.549	25.295			3.9351	4.2697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9351	4.2697	NaN	1	1	Median	8208300	1476100	6732200	0	0	0	0	0	0	0	0	0	8208300	1476100	6732200	34491	775	32643	212082	286133	286133			1	
LTLDLTVLLGVLQGQQQSLQQGAHSTGSSR	0	Unmodified	3134.6684	0.66838912	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.789	92.068	3	3.5517E-123	53669	160513_QHF_FH_JSI10Kac_6	231.74	206.91			0.97613	1.1612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97613	1.1612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159620000	91949000	67674000	0	0	0	159620000	91949000	67674000	0	0	0	0	0	0	34492	4361	32644	212083	286134	286134			1	
LTLDTIFVPNTGK	1	Unmodified	1417.7817	0.78168095	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	5.29	3	8	1					3		4	4	4	3	85.767	83.146	2;3	8.9482E-11	75071	160511_QHF_FH_JSI9i_2	152.7	136.81			0.92466	0.95893	17.575	15	1	Median	1.2503	1.062	14.253	4	0	Median	0.7206	0.8649	23.401	4	1	Median	0.97616	0.93381	10.459	4	0	Median	0.88353	0.99336	5.3936	3	0	Median	807980000	423150000	384830000	165510000	70750000	94765000	167550000	100290000	67257000	291600000	151710000	139890000	183320000	100400000	82917000	34493	5499	32645	212084;212085;212086;212087;212088;212089;212090;212091;212092;212093;212094;212095;212096;212097;212098	286135;286136;286137;286138;286139;286140;286141;286142;286143;286144;286145;286146;286147;286148;286149;286150;286151;286152;286153;286154;286155;286156	286144			22	
LTLDTIFVPNTGKK	2	Unmodified	1545.8766	0.87664397	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							3	3	3	3	74.036	73.177	2;3	1.0028E-12	63274	160511_QHF_FH_JSI12i_3	124.12	95.919			0.86144	0.84066	11.837	10	10	Median	1.1429	0.91288	15.043	3	3	Median	0.86324	0.99074	10.75	3	3	Median	0.8482	0.82368	2.7184	2	2	Median	0.77146	0.77609	1.7159	2	2	Median	3164900000	1641500000	1523400000	387400000	185950000	201440000	737020000	401850000	335170000	173910000	99368000	74543000	1866600000	954320000	912250000	34494	5499	32646	212099;212100;212101;212102;212103;212104;212105;212106;212107;212108;212109;212110	286157;286158;286159;286160;286161;286162;286163;286164;286165;286166;286167;286168;286169	286169			13	
LTLFVNGQPRPLESSQVK	1	Unmodified	2012.1055	0.10547471	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	2	3	2	1	69.479	64.63	3	5.3028E-07	53485	160511_QHF_FH_JSI9i_3	102.78	88.522			0.83621	0.81186	37.979	8	1	Median	0.95702	0.80531	8.3178	2	0	Median	0.84658	1.0101	7.2972	3	0	Median	0.70927	0.67148	19.676	2	0	Median	0.308	0.33355	NaN	1	1	Median	981240000	506230000	475010000	334570000	148060000	186510000	396190000	212310000	183880000	188300000	100420000	87878000	62184000	45446000	16738000	34495	3876	32647	212111;212112;212113;212114;212115;212116;212117;212118	286170;286171;286172;286173;286174;286175;286176;286177;286178;286179;286180;286181;286182;286183	286177			14	
LTLHGLQQYYVK	1	Unmodified	1461.798	0.79799972	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.43		6	10						9	6	8	5	6	64.105	60.16	2;3	9.4462E-65	50521	160511_QHF_FH_JSI10i_3	229.73	177.15			0.98522	0.9336	48.632	23	10	Median	1.1099	0.94919	20.564	6	2	Median	0.77914	0.89622	86.551	6	4	Median	0.97084	0.9336	31.252	5	1	Median	0.90988	0.93521	17.408	6	3	Median	29709000000	14453000000	15255000000	4938500000	2008500000	2930000000	5477700000	2777900000	2699800000	7604300000	3810400000	3794000000	11688000000	5856500000	5831600000	34496	2474;97	32648	212119;212120;212121;212122;212123;212124;212125;212126;212127;212128;212129;212130;212131;212132;212133;212134;212135;212136;212137;212138;212139;212140;212141;212142;212143	286184;286185;286186;286187;286188;286189;286190;286191;286192;286193;286194;286195;286196;286197;286198;286199;286200;286201;286202;286203;286204;286205;286206;286207;286208;286209;286210;286211;286212;286213;286214;286215;286216;286217;286218;286219;286220;286221;286222;286223;286224;286225;286226;286227;286228;286229;286230;286231;286232;286233;286234;286235	286199			52	
LTLHVGDGFEFMK	1	Unmodified	1492.7384	0.73843593	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	81.527	80.821	3	5.2477E-11	70065	160511_QHF_FH_JSI12i_3	148.68	137.47			1.1903	1.3521	17.521	4	0	Linear	1.0991	0.91508	NaN	1	0	Median	0.90552	1.0112	NaN	1	0	Median	1.3151	1.2528	NaN	1	0	Median	1.289	1.3256	NaN	1	0	Median	441180000	226000000	215170000	13281000	5141700	8138900	20179000	12463000	7715500	127490000	61409000	66079000	280230000	146990000	133240000	34497	1163	32649	212144;212145;212146;212147	286236;286237;286238;286239	286239			4	
LTLHVGDGFEFMK	1	Oxidation (M)	1508.7334	0.73335055	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	70.342	70.044	3	0.0038416	60591	160511_QHF_FH_JSI12i_3	44.436	39.967			1.0558	1.1898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0558	1.1898	NaN	1	0	Median	71513000	32998000	38515000	0	0	0	0	0	0	0	0	0	71513000	32998000	38515000	34498	1163	32649	212148	286240;286241	286240		792	2	
LTLIDPETLLPR	0	Unmodified	1379.8024	0.8024164	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.716	4	5	2							3	2	3	3	101.29	101.18	2;3	1.1043E-22	89015	160511_QHF_FH_JSI9i_2	173.37	136.81			0.9851	1.0227	14.552	10	0	Median	1.4773	1.2057	16.653	3	0	Median	0.84167	1.0109	10.895	2	0	Median	1.068	1.0641	4.7984	2	0	Median	0.90304	1.0167	9.7049	3	0	Plateau	2594000000	1290500000	1303500000	573390000	255800000	317600000	686500000	373400000	313100000	709600000	328330000	381260000	624470000	332930000	291550000	34499	3343	32650	212149;212150;212151;212152;212153;212154;212155;212156;212157;212158;212159	286242;286243;286244;286245;286246;286247;286248;286249;286250;286251;286252;286253;286254;286255	286252			13	
LTLIHWK	1	Unmodified	909.54362	0.54362294	3535	Q8N531	FBXL6	F-box/LRR-repeat protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	3	2	2	58.998	54.448	3	0.005627	47586	160511_QHF_FH_JSI11i_3	57.281	34.262			1.0064	0.96233	12.229	7	3	Median	1.315	1.1027	19.258	2	0	Median	0.79901	0.90073	NaN	1	1	Median	1.0355	0.99257	11.374	2	1	Median	0.9136	0.97037	8.8123	2	1	Median	317720000	151240000	166480000	62298000	21318000	40980000	28902000	15184000	13718000	115010000	60852000	54154000	111520000	53888000	57630000	34500	3535	32651	212160;212161;212162;212163;212164;212165;212166;212167;212168	286256;286257;286258;286259;286260;286261;286262;286263;286264;286265	286256			10	
LTLISEDIK	1	Unmodified	1030.591	0.59102664	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.899	58.98	2	0.00062933	50596	160511_QHF_FH_JSI12i_2	87.639	44.393			0.83544	0.92048	23.291	4	3	Median	0.80967	0.68464	NaN	1	1	Median	0.71525	0.88146	NaN	1	0	Median	1.1899	1.2028	NaN	1	1	Median	0.86203	0.96123	NaN	1	1	Median	344670000	188130000	156540000	54117000	26970000	27146000	71445000	37773000	33672000	111910000	55175000	56736000	107200000	68215000	38982000	34501	1133	32652	212169;212170;212171;212172	286266;286267;286268;286269	286266			4	
LTLLHYDPVVK	1	Unmodified	1296.7442	0.74417324	519	O75394	MRPL33	39S ribosomal protein L33, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	4	2	64.89	62.284	2;3	2.8868E-06	55031	160511_QHF_FH_JSI11i_3	107.18	90.643			1.2583	1.1206	21.439	9	2	Median	1.6069	1.3867	30.132	2	1	Median	0.80674	0.97973	13.114	2	0	Median	1.2583	1.2065	21.048	3	1	Median	1.0707	1.1168	20.934	2	0	Median	880100000	407870000	472220000	69562000	28513000	41050000	148730000	79559000	69170000	425280000	194900000	230380000	236520000	104900000	131620000	34502	519	32653	212173;212174;212175;212176;212177;212178;212179;212180;212181;212182	286270;286271;286272;286273;286274;286275;286276;286277;286278;286279	286270			10	
LTLLNPK	1	Unmodified	797.50109	0.50108942	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.81	3	4	3					1		2	3	3	3	44.344	43.633	2	0.010327	38303	160511_QHF_FH_JSI11i_3	75.311	32.244			0.90795	1.0722	13.181	10	0	Median	1.4147	1.1625	NaN	1	0	Median	0.90139	1.1074	6.3034	3	0	Median	0.91457	0.90076	14.547	3	0	Median	0.84815	1.0876	18.661	3	0	Plateau	3772600000	1888800000	1883800000	415560000	190010000	225550000	773810000	397720000	376090000	1348600000	667330000	681240000	1234600000	633690000	600950000	34503	1798	32654	212183;212184;212185;212186;212187;212188;212189;212190;212191;212192;212193	286280;286281;286282;286283;286284;286285;286286;286287;286288;286289;286290;286291;286292;286293;286294;286295	286281			16	
LTLLPAVVMHLK	1	Unmodified	1333.8156	0.81556404	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	92.186	91.816	3	6.8105E-06	81577	160511_QHF_FH_JSI11i_3	88.187	75.61			0.61835	0.62325	18.859	3	3	Plateau	1.1303	0.9049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79414	0.72848	NaN	1	1	Median	0.61645	0.62151	NaN	1	1	Median	238600000	123570000	115030000	48346000	18300000	30047000	0	0	0	69635000	39280000	30355000	120620000	65987000	54633000	34504	4246	32655	212194;212195;212196;212197;212198;212199;212200	286296;286297;286298;286299;286300;286301;286302	286297			7	
LTLLQLK	1	Unmodified	827.54804	0.54803961	3669	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	66.576	65.758	2	0.013926	58307	160511_QHF_FH_JSI11i_3	67.035	22.424			1.0882	1.1097	14.791	4	0	Median	1.61	1.3287	NaN	1	0	Median	0.89796	1.0323	NaN	1	0	Median	1.0304	0.95373	NaN	1	0	Median	1.1491	1.1929	NaN	1	0	Median	293620000	146220000	147410000	41287000	17985000	23302000	50699000	26838000	23862000	86501000	47709000	38792000	115130000	53683000	61450000	34505	3669	32656	212201;212202;212203;212204	286303;286304;286305;286306;286307	286303			5	
LTLLRPEK	1	Unmodified	968.60187	0.6018661	3812	Q8WXI7	MUC16	Mucin-16	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	34.278	33.535	3	0.0034721	27400	160511_QHF_FH_JSI9i_3	51.066	27.638			0.78727	0.80776	8.8668	4	0	Median	1.1399	0.89853	NaN	1	0	Median	0.68539	0.78387	NaN	1	0	Median	0.8528	0.83238	NaN	1	0	Median	0.72678	0.72928	NaN	1	0	Median	1468000000	815860000	652100000	482980000	257990000	224990000	377050000	209810000	167240000	555230000	317840000	237390000	52703000	30223000	22480000	34506	3812	32657	212205;212206;212207;212208	286308;286309;286310;286311;286312;286313;286314;286315;286316;286317	286314			10	
LTLLSLLHMPFTIAAEK	1	Unmodified	1897.0747	0.074691853	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	2	1	100.12	95.263	3	5.6152E-56	53423	160513_QHF_FH_JSI10Kac_6	155.79	147.48			0.93778	1.1433	19.629	7	4	Linear	1.0175	0.87079	11.682	2	2	Median	0.68724	0.81586	23.766	2	1	Median	1.0836	1.0298	27.622	2	1	Median	1.0252	1.0761	NaN	1	0	Median	1794000000	899680000	894340000	392250000	186640000	205610000	541030000	300070000	240960000	646240000	327700000	318540000	214510000	85275000	129230000	34507	2212	32658	212209;212210;212211;212212;212213;212214;212215;212216	286318;286319;286320;286321;286322;286323;286324;286325;286326;286327	286327			10	
LTLLSLLHMPFTIAAEK	1	Oxidation (M)	1913.0696	0.069606475	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	1	0			By MS/MS	By matching	16	0									2			1	1	95.385	85.968	3	0.0051209	48637	160513_QHF_FH_JSI11Kac_6	58.427	47.572			0.98139	0.98414	0.79149	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.026	0.97864	NaN	1	0	Median	0.93877	0.98966	NaN	1	0	Median	104980000	60512000	44471000	0	0	0	0	0	0	73210000	43596000	29615000	31772000	16916000	14856000	34508	2212	32658	212217;212218	286328	286328		1840	0	
LTLLTLHFPR	0	Unmodified	1209.7234	0.72337821	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.228	73.984	3	3.4577E-34	41639	160513_QHF_FH_JSI10Kac_6	194.06	183.23			1.1165	1.1813	11.622	4	0	Linear	1.1747	1.0231	NaN	1	0	Median	1.0927	1.3101	NaN	1	0	Median	1.1796	1.1024	NaN	1	0	Median	1.1926	1.2658	NaN	1	0	Median	930270000	441630000	488640000	261360000	116600000	144770000	454160000	226690000	227470000	184200000	84714000	99488000	30543000	13625000	16918000	34509	3901	32659	212219;212220;212221;212222	286329;286330;286331;286332;286333;286334;286335;286336	286336			8	
LTLMEEVLLLGLK	1	Unmodified	1470.8731	0.8731385	4717;4716	Q9H4A6;Q9H4A5	GOLPH3;GOLPH3L	Golgi phosphoprotein 3;Golgi phosphoprotein 3-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	2	2	2	1	100.52	95.675	2	1.9694E-50	49191	160513_QHF_FH_JSI12Kac_6	203.94	145.98			0.90482	0.92536	16.633	7	1	Median	1.0762	0.91681	1.7501	2	0	Median	0.88022	1.0703	1.4608	2	0	Median	0.81099	0.78807	22.713	2	1	Median	0.74274	0.7872	NaN	1	0	Median	1195700000	622080000	573670000	216210000	105520000	110700000	397920000	205970000	191950000	277210000	134630000	142590000	304400000	175960000	128430000	34510	4717;4716	32660	212223;212224;212225;212226;212227;212228;212229	286337;286338;286339;286340;286341;286342;286343;286344;286345;286346;286347	286345			11	
LTLPHSIR	0	Unmodified	935.55525	0.55525025	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	2	2	2	38.342	37.622	2;3	0.0011932	31316	160511_QHF_FH_JSI10i_3	58.596	30.378			0.89965	0.86831	19.165	8	0	Median	1.0824	0.86788	0.75607	2	0	Median	0.65721	0.76063	37.474	2	0	Median	1.031	0.98212	18.104	2	0	Median	0.76973	0.82728	12.436	2	0	Median	1133300000	627330000	505960000	312190000	153350000	158840000	179080000	94660000	84424000	307380000	155510000	151870000	334630000	223810000	110820000	34511	596	32661	212230;212231;212232;212233;212234;212235;212236;212237	286348;286349;286350;286351;286352;286353;286354;286355;286356;286357;286358	286351			11	
LTLSALLDGK	1	Unmodified	1029.607	0.60701105	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.96	3	8	11						4	6	5	8	7	82.308	80.074	2	3.1977E-14	73430	160511_QHF_FH_JSI10i_2	162.88	0			1.0606	1.0273	15.038	18	0	Median	1.2149	1.0288	5.2341	3	0	Median	0.82166	0.99403	9.0012	4	0	Median	1.0411	0.98931	19.944	5	0	Median	1.1302	1.1705	16.353	6	0	Median	15129000000	6886700000	8241800000	1575900000	700490000	875430000	2641800000	1496000000	1145800000	3628700000	1670500000	1958200000	7282100000	3019800000	4262300000	34512	1195	32662	212238;212239;212240;212241;212242;212243;212244;212245;212246;212247;212248;212249;212250;212251;212252;212253;212254;212255;212256;212257;212258;212259;212260;212261;212262;212263	286359;286360;286361;286362;286363;286364;286365;286366;286367;286368;286369;286370;286371;286372;286373;286374;286375;286376;286377;286378;286379;286380;286381;286382;286383;286384;286385;286386;286387;286388;286389;286390;286391;286392;286393;286394;286395;286396;286397;286398;286399;286400;286401;286402;286403;286404;286405;286406;286407;286408;286409;286410	286394			52	
LTLSALVDGK	1	Unmodified	1015.5914	0.59136099	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.6	3	4	5					4		3	4	4	5	73.087	69.946	2	2.02E-11	60200	160511_QHF_FH_JSI12i_2	152.28	91.687			0.96913	0.99952	40.104	16	1	Median	0.93072	0.7833	16.263	3	0	Median	0.87246	1.0412	13.627	4	0	Median	1.0411	1.0242	2.7799	4	0	Median	0.83812	0.91566	70.83	5	1	Median	6693800000	3303000000	3390800000	748420000	363070000	385360000	1041000000	517460000	523540000	1972800000	965850000	1007000000	2931500000	1456600000	1474900000	34513	1570	32663	212264;212265;212266;212267;212268;212269;212270;212271;212272;212273;212274;212275;212276;212277;212278;212279	286411;286412;286413;286414;286415;286416;286417;286418;286419;286420;286421;286422;286423;286424;286425;286426;286427;286428;286429;286430;286431;286432;286433;286434;286435;286436;286437;286438;286439;286440	286418			30	
LTLSMRPDDK	1	Unmodified	1174.6016	0.6016081	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		38.857	37.863	3	0.0040474	31595	160511_QHF_FH_JSI10i_3	40.496	23.825			0.79365	0.89507	9.3991	3	2	Plateau	1.1482	0.942	NaN	1	1	Median	0.77731	0.89507	NaN	1	0	Median	0.81643	0.78508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	295670000	165970000	129700000	47070000	22549000	24520000	71621000	36502000	35120000	176980000	106920000	70061000	0	0	0	34514	2900	32664	212280;212281;212282	286441;286442;286443;286444	286442			4	
LTLSQFQK	1	Unmodified	963.53893	0.53893149	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	49.3	48.447	2	0.0011352	42612	160511_QHF_FH_JSI11i_3	93.561	61.09			0.96213	0.98008	7.5451	4	0	Median	1.2476	1.0003	NaN	1	0	Median	0.81908	0.96022	NaN	1	0	Median	0.9316	0.85958	NaN	1	0	Median	0.99366	1.016	NaN	1	0	Median	1339000000	654520000	684450000	151710000	68725000	82989000	216190000	120590000	95601000	368170000	176880000	191290000	602890000	288320000	314560000	34515	3503	32665	212283;212284;212285;212286;212287	286445;286446;286447;286448;286449;286450;286451;286452;286453	286445			9	
LTLTFNR	0	Unmodified	863.4865	0.48650199	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	56.005	50.311	2	0.0068995	41957	160511_QHF_FH_JSI10i_3	89.427	48.506			1.0672	1.0947	12.484	9	0	Median	1.3705	1.15	5.1345	3	0	Median	0.91717	1.0633	12.432	2	0	Median	1.0397	0.98251	12.546	2	0	Median	0.95074	0.98486	21.32	2	0	Median	3995900000	2052800000	1943200000	1032900000	443820000	589030000	1197100000	663700000	533360000	835660000	444220000	391440000	930340000	501020000	429320000	34516	1454	32666	212288;212289;212290;212291;212292;212293;212294;212295;212296	286454;286455;286456;286457	286454			4	
LTLTFSAQTK	1	Unmodified	1108.6128	0.61282471	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	9.5	6.5			2						2		1	2	1	60.236	55.694	2	0.008524	47663	160511_QHF_FH_JSI12i_3	50.108	38.339			0.94667	0.97761	17.922	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98929	1.133	NaN	1	0	Median	0.87536	0.82679	5.8031	2	0	Median	1.1001	1.1095	NaN	1	0	Median	140000000	68049000	71951000	0	0	0	12374000	6624700	5749700	47239000	26536000	20702000	80388000	34888000	45500000	34517	432	32667	212297;212298;212299;212300	286458;286459	286459			2	
LTLWYYSEER	0	Unmodified	1358.6507	0.65066678	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.129	68.726	2	3.9753E-05	36832	160513_QHF_FH_JSI9Kac_6	103.88	85.439			0.69681	1.2225	29.565	4	1	Linear	1.4986	1.3106	NaN	1	1	Median	0.64857	0.74807	NaN	1	0	Median	1.2433	1.1403	NaN	1	0	Median	1.3658	1.4724	NaN	1	0	Median	311480000	156620000	154860000	81053000	32264000	48789000	115210000	71730000	43476000	57688000	27804000	29884000	57529000	24818000	32711000	34518	4399	32668	212301;212302;212303;212304	286460;286461;286462;286463;286464;286465	286462			6	
LTLWYYSEERK	1	Unmodified	1486.7456	0.7456298	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	3	3	2	67.118	59.794	2;3	2.9714E-26	31338	160513_QHF_FH_JSI12Kac_6	182.64	146.21			0.90391	0.88939	21.915	10	1	Median	0.94397	0.80764	40.991	3	1	Median	0.80713	0.94763	5.052	2	0	Median	0.97911	0.91942	11.318	3	0	Plateau	0.83405	0.88798	6.1827	2	0	Median	2372400000	1224700000	1147700000	459730000	234620000	225110000	1063900000	554650000	509280000	514160000	270460000	243710000	334540000	164980000	169560000	34519	4399	32669	212305;212306;212307;212308;212309;212310;212311;212312;212313;212314;212315	286466;286467;286468;286469;286470;286471;286472;286473;286474;286475;286476;286477;286478;286479;286480;286481;286482;286483;286484;286485	286482			20	
LTLYDIAHTPGVAADLSHIETK	1	Unmodified	2364.2325	0.23252572	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	2.94		12	8						1	6	5	4	6	93.542	92.642	2;3;4	5.318E-58	80242	160511_QHF_FH_JSI12i_3	214.35	203.36			0.92071	0.92613	22.751	19	1	Median	1.1494	0.97664	18.472	6	1	Median	0.85451	1.0262	17.131	4	0	Median	0.90907	0.8897	44.949	4	0	Median	0.83564	0.92613	7.5178	5	0	Median	12045000000	5302200000	6742800000	1570000000	746860000	823120000	1012600000	511650000	500960000	3548800000	1487700000	2061100000	5913600000	2556000000	3357600000	34520	1504	32670	212316;212317;212318;212319;212320;212321;212322;212323;212324;212325;212326;212327;212328;212329;212330;212331;212332;212333;212334;212335;212336	286486;286487;286488;286489;286490;286491;286492;286493;286494;286495;286496;286497;286498;286499;286500;286501;286502;286503;286504;286505;286506;286507;286508;286509;286510;286511;286512;286513;286514;286515;286516;286517;286518;286519;286520;286521;286522;286523;286524;286525;286526;286527;286528;286529;286530;286531;286532;286533;286534	286528			48	
LTMAQLK	1	Unmodified	803.45751	0.45751004	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.53	37.744	2	0.04145	32124	160511_QHF_FH_JSI12i_3	46.663	21.665			0.90675	0.94253	16.069	4	0	Median	1.2224	1.009	NaN	1	0	Median	0.86172	1.0241	NaN	1	0	Median	0.95413	0.88047	NaN	1	0	Median	0.72812	0.72418	NaN	1	0	Median	468160000	211370000	256790000	32561000	12169000	20392000	55529000	24378000	31151000	155150000	72906000	82247000	224920000	101920000	123000000	34521	602	32671	212337;212338;212339;212340	286535	286535			1	
LTMCGVNSIIK	1	Unmodified	1234.6414	0.64136442	5832				yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	102.03	101.97	2	0.00029206	88743	160511_QHF_FH_JSI12i_3	76.827	32.478	+		1.0361	1.0679	15.789	3	1	Plateau	1.0487	0.84058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1916	1.1325	NaN	1	1	Median	1.0361	1.0679	NaN	1	0	Median	927040000	472010000	455030000	216750000	104690000	112060000	0	0	0	208000000	84763000	123240000	502290000	282550000	219740000	34522	5832	32672	212341;212342;212343	286536;286537	286537			2	
LTMELTGDSMEVKPIMTR	1	Unmodified	2051.0101	0.01011904	4769	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.397	76.12	3	0.0099695	66075	160511_QHF_FH_JSI12i_3	44.382	34.594			2.3787	2.4509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3787	2.4509	NaN	1	1	Median	15043000	5523000	9519500	0	0	0	0	0	0	0	0	0	15043000	5523000	9519500	34523	4769	32673	212344	286538	286538			1	
LTMLNTVSK	1	Unmodified	1005.5529	0.55286699	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	42.861	41.645	2	0.0087069	35661	160511_QHF_FH_JSI12i_2	51.949	27.13			1.3163	1.2824	90.615	2	0	Median	0.79701	0.67572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1739	2.4339	NaN	1	0	Median	259150000	122900000	136240000	162990000	94982000	68006000	0	0	0	0	0	0	96157000	27919000	68238000	34524	4331	32674	212345;212346	286539;286540	286539			2	
LTMQVSSLQR	0	Unmodified	1161.6176	0.61759251	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	3	4	3	50.101	45.378	2	3.3311E-05	38011	160511_QHF_FH_JSI10i_3	111.46	53.022			0.94764	0.93715	12.799	14	0	Median	1.1093	0.9543	17.975	4	0	Median	0.74923	0.90434	7.8144	3	0	Plateau	0.9634	0.94827	2.5908	4	0	Median	0.84854	0.83544	15.382	3	0	Median	2431200000	1271000000	1160300000	439620000	192180000	247450000	647880000	379680000	268210000	767050000	408600000	358450000	576670000	290530000	286140000	34525	1444	32675	212347;212348;212349;212350;212351;212352;212353;212354;212355;212356;212357;212358;212359;212360	286541;286542;286543;286544;286545;286546;286547;286548;286549;286550;286551;286552;286553;286554;286555;286556;286557;286558;286559	286545			19	
LTMQVSSLQR	0	Oxidation (M)	1177.6125	0.61250714	1444	P35659	DEK	Protein DEK	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.416							2	7		1	4	2	2	32.85	23.38	2	0.0068431	13850	160513_QHF_FH_JSI11Kac_5	57.598	26.226			0.95959	0.99137	14.324	9	0	Median	1.1655	0.99137	NaN	1	0	Median	0.82654	0.9932	16.309	4	0	Median	1.0033	0.96588	5.8894	2	0	Median	0.8821	0.96313	28.227	2	0	Median	41016000	21541000	19475000	4985700	2418800	2566900	17852000	9604500	8247000	12729000	6449900	6279300	5449700	3067600	2382000	34526	1444	32675	212361;212362;212363;212364;212365;212366;212367;212368;212369	286560;286561;286562	286561		1122	3	
LTMQVSSLQREPFTIAQGK	1	Unmodified	2133.1252	0.12522387	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		74.963	72.677	3	3.7511E-05	61522	160511_QHF_FH_JSI10i_3	70.96	50.592			1.0644	1.0408	13.225	4	2	Median	1.1677	0.9638	NaN	1	0	Median	0.88727	1.0364	11.471	2	1	Median	1.3178	1.2586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	202620000	108250000	94368000	70663000	38190000	32473000	105850000	58732000	47114000	26112000	11331000	14781000	0	0	0	34527	1444	32676	212370;212371;212372;212373	286563;286564;286565;286566;286567;286568	286565			6	
LTMVPPNIAELK	1	Unmodified	1324.7425	0.74245868	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.122	79.969	2	0.0023558	68955	160511_QHF_FH_JSI12i_2	70.942	53.506			0.90059	1.0035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90059	1.0035	NaN	1	1	Median	84621000	37720000	46900000	0	0	0	0	0	0	0	0	0	84621000	37720000	46900000	34528	2668	32677	212374	286569	286569			1	
LTMVVLSSEK	1	Unmodified	1105.6053	0.60529649	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.88		3	1				1	6	3	3	3	3	5	63.441	56.046	2	6.1745E-09	28290	160513_QHF_FH_JSI10Kac_5	144.77	115.62			1.0135	0.94458	35.528	13	0	Median	1.1282	0.94529	13.171	2	0	Median	0.60837	0.70483	34.529	3	0	Median	1.0174	1.0238	17.002	3	0	Median	0.85831	0.94458	53.919	5	0	Median	362050000	187020000	175030000	53065000	28072000	24993000	70460000	39178000	31281000	129610000	62805000	66808000	108910000	56965000	51948000	34529	3675	32678	212375;212376;212377;212378;212379;212380;212381;212382;212383;212384;212385;212386;212387;212388	286570;286571;286572;286573;286574;286575;286576;286577;286578;286579;286580	286579			11	
LTMVVLSSEK	1	Oxidation (M)	1121.6002	0.60021112	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	44.58	34.448	2	0.042666	19540	160513_QHF_FH_JSI11Kac_5	36.334	26.423			0.91921	0.97679	16.729	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0457	1.2069	NaN	1	0	Median	0.90926	0.86741	NaN	1	0	Median	0.91921	0.97679	NaN	1	0	Median	12108000	6000800	6107000	0	0	0	3190100	1781500	1408600	6851800	3120800	3731000	2065900	1098500	967310	34530	3675	32678	212389;212390;212391	286581	286581			1	
LTNAEGVEFK	1	Unmodified	1106.5608	0.56078914	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS				1.5	0.5	1	1								2				35.214	34.071	2	0.037336	30312	160511_QHF_FH_JSI9i_1	38.276	27.989			0.88618	0.76715	72.668	2	0	Median	0.88618	0.76715	72.668	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5759300000	3162100000	2597300000	5759300000	3162100000	2597300000	0	0	0	0	0	0	0	0	0	34531	602	32679	212392;212393	286582;286583	286582			2	
LTNAGYDYLALK	1	Unmodified	1340.6976	0.69761697	4483	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.684	62.766	2	0.013582	53873	160511_QHF_FH_JSI12i_2	53.597	39.46			0.69016	0.71586	28.442	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59545	0.58545	NaN	1	0	Median	0.79994	0.87533	NaN	1	1	Median	67803000	42935000	24867000	0	0	0	0	0	0	48548000	31203000	17345000	19255000	11733000	7522000	34532	4483	32680	212394;212395	286584;286585;286586	286584			3	
LTNDIEELGPYTLDR	0	Unmodified	1747.8628	0.8628444	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	74.389	74.02	2	0.00097516	67447	160511_QHF_FH_JSI12i_1	80.522	46.144			1.0961	1.2059	82.298	2	1	Median	NaN	NaN	NaN	0	0	Median	0.59321	0.67389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0252	2.158	NaN	1	1	Median	70746000	35733000	35014000	0	0	0	31271000	21466000	9804800	0	0	0	39475000	14267000	25209000	34533	3812	32681	212396;212397	286587;286588	286587			2	
LTNEDFRK	1	Unmodified	1021.5193	0.51925868	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	2.33	0.471		4	2							1	1	1	3	14.974	14.572	2;3	0.0053396	11516	160511_QHF_FH_JSI12i_3	39.622	23.289			1.0419	1.0132	12.945	6	0	Median	1.1326	0.96748	NaN	1	0	Median	1.0619	1.2798	NaN	1	0	Median	1.1796	1.1805	NaN	1	0	Median	1.0222	1.0291	6.5384	3	0	Plateau	516610000	246730000	269880000	89344000	33499000	55845000	73786000	35331000	38455000	73869000	36387000	37481000	279610000	141510000	138100000	34534	2353	32682	212398;212399;212400;212401;212402;212403	286589;286590	286590			2	
LTNENMEITSALQSEQHVK	1	Unmodified	2171.0528	0.052846792	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	57.236	56.215	3	8.1317E-14	48583	160511_QHF_FH_JSI11i_2	143.69	133.63			0.97277	0.99477	10.456	5	2	Median	1.1745	1.0065	NaN	1	0	Median	0.97277	1.1972	NaN	1	0	Median	1.0091	0.97314	NaN	1	0	Median	0.84761	0.94639	7.0508	2	2	Median	600090000	329320000	270780000	85822000	47973000	37849000	134140000	73554000	60589000	150250000	75155000	75096000	229880000	132640000	97245000	34535	2270	32683	212404;212405;212406;212407;212408	286591;286592;286593;286594;286595;286596	286595			6	
LTNFPEMMNR	0	Unmodified	1251.574	0.57401314	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	1	2	2	3	55.518	54.718	2	8.8396E-05	48336	160511_QHF_FH_JSI10i_2	85.744	63.596			1.3288	1.1709	96.031	7	3	Median	1.3932	1.1709	NaN	1	1	Median	0.33209	0.39314	191.18	2	0	Median	1.2299	1.2079	10.852	2	1	Median	1.1631	1.232	24.328	2	1	Median	1369000000	683820000	685200000	218600000	90024000	128570000	165860000	134790000	31071000	544480000	260540000	283940000	440090000	198470000	241620000	34536	1943	32684	212409;212410;212411;212412;212413;212414;212415;212416	286597;286598;286599;286600;286601;286602;286603;286604;286605;286606	286603			10	
LTNGIWILAELR	0	Unmodified	1397.8031	0.8030851	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.054	84.703	2	2.0676E-15	45544	160513_QHF_FH_JSI12Kac_6	152.85	100.93			0.91661	0.93813	5.2309	4	0	Median	1.0918	0.9342	NaN	1	0	Median	0.83903	1.0112	NaN	1	0	Median	0.9406	0.89075	NaN	1	0	Median	0.89323	0.94207	NaN	1	0	Median	766100000	411130000	354970000	119810000	55923000	63891000	291470000	171190000	120290000	227180000	119090000	108090000	127630000	64924000	62702000	34537	2046	32685	212417;212418;212419;212420	286607;286608;286609;286610;286611;286612;286613	286612			7	
LTNGIWVLAELR	0	Unmodified	1383.7874	0.78743503	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.567	83.847	2	2.5411E-05	47573	160513_QHF_FH_JSI10Kac_6	97.779	78.425			0.97539	1.1731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97539	1.1731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146480000	79688000	66791000	0	0	0	146480000	79688000	66791000	0	0	0	0	0	0	34538	2296	32686	212421	286614;286615	286615			2	
LTNHGKTGNGGAQSQHQNVNQGPTCNVGSK	2	Acetyl (K)	3131.4551	0.45511865	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	23.814	16.516	4	0.024597	9648	160513_QHF_FH_JSI10Kac_6	31.37	25.65			1.0466	1.1878	20.803	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87632	1.0253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.25	1.3761	NaN	1	0	Median	9078700	4309900	4768900	0	0	0	5734000	2642800	3091300	0	0	0	3344700	1667100	1677600	34539	3330	32687	212422;212423	286616	286616	2842;2843		1	
LTNHGKTGNGGAQSQHQNVNQGPTCNVGSKGVGAGNHGAK	3	2 Acetyl (K)	4021.891	0.89098205	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	2	0	0	2		By MS/MS		By matching	16	0									2		1		1	32.351	23.765	5	5.2502E-21	13547	160513_QHF_FH_JSI10Kac_6	101.78	97.067			1.0585	1.1894	22.068	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84755	1.0176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3221	1.3903	NaN	1	0	Median	48139000	23668000	24471000	0	0	0	41183000	20124000	21059000	0	0	0	6956500	3544200	3412300	34540	3330	32688	212424;212425	286617	286617	2842;2843		1	
LTNLQENLSEVSQVK	1	Unmodified	1700.8945	0.89447888	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	63.148	62.219	2	1.7688E-15	54191	160511_QHF_FH_JSI11i_2	167.98	136.39			0.63781	0.59182	49.368	4	3	Median	0.75683	0.65352	64.996	2	2	Median	NaN	NaN	NaN	0	0	Median	0.859	0.84863	NaN	1	0	Median	0.3566	0.39427	NaN	1	1	Median	117900000	66885000	51013000	52765000	32985000	19781000	0	0	0	44288000	18877000	25411000	20845000	15024000	5820900	34541	1360	32689	212426;212427;212428;212429;212430;212431	286618;286619;286620;286621;286622;286623;286624	286623			7	
LTNQELLRK	1	Unmodified	1113.6506	0.6506072	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		23.787	23.16	3	0.00058874	19171	160511_QHF_FH_JSI10i_3	52.126	25.419			1.6638	1.6876	77.993	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86818	0.97218	NaN	1	0	Median	3.1885	2.9293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	243220000	104560000	138660000	0	0	0	104480000	55090000	49390000	138740000	49466000	89275000	0	0	0	34542	3074	32690	212432;212433	286625;286626;286627	286627			3	
LTNSAEVAK	1	Unmodified	931.49746	0.4974606	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			11.388	10.846	2	0.010803	8663	160511_QHF_FH_JSI10i_1	49.536	20.386			0.82822	0.80809	4.2372	2	0	Median	0.95326	0.78424	NaN	1	0	Median	0.71959	0.83267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	393100000	223670000	169430000	187600000	99066000	88531000	205500000	124610000	80894000	0	0	0	0	0	0	34543	2291	32691	212434;212435	286628;286629	286628			2	
LTNSMMMHGR	0	Oxidation (M)	1192.5151	0.51511805	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.67	6.53		1	15						17	11	10	5	7	17.374	13.157	2;3	1.84E-05	15553	160511_QHF_FH_JSI10i_3	89.9	79.947			0.94296	0.99026	31.185	33	4	Median	1.2481	1.025	39.461	11	3	Median	0.75282	0.89147	27.704	10	0	Median	1.0805	1.0764	11.052	5	0	Median	0.92008	0.92479	33.422	7	1	Median	3337400000	1678400000	1659000000	1650500000	732300000	918160000	1270100000	724860000	545210000	222450000	117610000	104850000	194440000	103670000	90770000	34544	1594	32692	212436;212437;212438;212439;212440;212441;212442;212443;212444;212445;212446;212447;212448;212449;212450;212451;212452;212453;212454;212455;212456;212457;212458;212459;212460;212461;212462;212463;212464;212465;212466;212467;212468	286630;286631;286632;286633;286634;286635;286636;286637;286638;286639;286640;286641;286642;286643;286644;286645;286646;286647;286648;286649;286650;286651;286652;286653;286654;286655;286656;286657;286658;286659;286660;286661;286662;286663	286637		1261;1262;1263	33	
LTNSMMMHGR	0	Unmodified	1176.5202	0.52020343	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.85		4	17						4	8	7	4	6	21.039	19.015	2;3	3.9292E-16	15321	160511_QHF_FH_JSI9i_3	159.83	150.17			0.95059	1.0058	68.654	22	5	Median	1.3414	1.1374	41.499	6	0	Median	0.90127	1.0561	58.328	6	2	Median	1.0228	0.96729	96.622	4	1	Median	0.65412	0.68455	78.528	6	2	Median	8125100000	3837300000	4287800000	3401200000	1378800000	2022400000	2983200000	1442500000	1540700000	488280000	302220000	186060000	1252400000	713790000	538650000	34545	1594	32692	212469;212470;212471;212472;212473;212474;212475;212476;212477;212478;212479;212480;212481;212482;212483;212484;212485;212486;212487;212488;212489;212490;212491;212492;212493	286664;286665;286666;286667;286668;286669;286670;286671;286672;286673;286674;286675;286676;286677;286678;286679;286680;286681;286682;286683;286684;286685;286686;286687;286688;286689;286690;286691;286692;286693	286676			30	
LTNSMMMHGR	0	2 Oxidation (M)	1208.51	0.51003267	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	3	3	2	2	17.334	14.971	3	0.0038151	15334	160511_QHF_FH_JSI9i_3	43.897	39.431			1.3069	1.203	74.907	9	4	Median	1.4152	1.203	53.693	3	1	Median	0.93159	1.0875	101.84	2	1	Median	1.2051	1.147	15.127	2	1	Median	0.94198	0.9653	167.89	2	1	Median	1064000000	481100000	582880000	392510000	158380000	234140000	438620000	215140000	223490000	117900000	59800000	58096000	114950000	47781000	67165000	34546	1594	32692	212494;212495;212496;212497;212498;212499;212500;212501;212502;212503	286694;286695;286696;286697;286698;286699;286700;286701	286699		1261;1262;1263	8	
LTNSMMMHGR	0	3 Oxidation (M)	1224.5049	0.5049473	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	3	0	By MS/MS				3	0			1							1				4.7578	4.2584	2	0.010863	2265	160511_QHF_FH_JSI9i_3	46.129	36.218			1.4993	1.2105	NaN	1	0	Median	1.4993	1.2105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83778000	31325000	52453000	83778000	31325000	52453000	0	0	0	0	0	0	0	0	0	34547	1594	32692	212504	286702	286702		1261;1262;1263	1	
LTNVAATSGDGYR	0	Unmodified	1323.6419	0.64189301	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	26.364	25.81	2	0.00027379	21561	160511_QHF_FH_JSI11i_2	90.653	79.29			0.95436	0.99226	23.916	6	3	Median	1.6045	1.3803	NaN	1	1	Median	0.66707	0.80921	19.316	2	1	Median	0.95436	0.93664	17.68	2	1	Median	1.115	1.1396	NaN	1	0	Median	344340000	190390000	153960000	23718000	8392900	15325000	118070000	76701000	41372000	132650000	68906000	63749000	69897000	36388000	33509000	34548	2806	32693	212505;212506;212507;212508;212509;212510;212511;212512	286703;286704;286705;286706;286707;286708;286709;286710;286711	286709			9	
LTNVAATSGDGYRGQTSPHTPNEK	1	Unmodified	2500.1942	0.19424273	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							3	2			27.761	26.56	3;4	0.00013797	21408	160511_QHF_FH_JSI9i_3	50.851	42.032			1.2292	1.0488	20.547	5	0	Median	1.2292	1.002	9.4594	3	0	Median	1.1013	1.3237	19.161	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234960000	106620000	128350000	177770000	83951000	93819000	57193000	22666000	34527000	0	0	0	0	0	0	34549	2806	32694	212513;212514;212515;212516;212517	286712;286713;286714;286715;286716;286717;286718;286719	286715			8	
LTNVAVVR	0	Unmodified	870.5287	0.52870115	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.707							1	2	1	1	1	1	1	36.381	26.878	2	0.015488	15700	160513_QHF_FH_JSI11Kac_5	60.478	30.402			0.87911	0.95276	6.7126	4	0	Median	1.2011	1.0343	NaN	1	0	Median	0.83125	0.98235	NaN	1	0	Median	0.92971	0.92407	NaN	1	0	Median	0.79422	0.88813	NaN	1	0	Median	34623000	16868000	17755000	4014000	1831600	2182400	7393700	3206600	4187000	16274000	7949300	8324600	6941700	3880200	3061500	34550	5569	32695	212518;212519;212520;212521	286720	286720			1	
LTPEEEEILNK	1	Unmodified	1313.6715	0.6714618	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.27	8	5	3				1	3		5	7	3	5	51.624	49.071	2;3	1.8391E-18	44364	160511_QHF_FH_JSI11i_1	166.07	137.67			0.98522	1.0712	40.951	18	4	Median	1.012	0.85102	19.169	4	1	Median	0.93669	1.1117	12.716	6	1	Median	0.85678	0.84062	12.892	3	0	Plateau	1.2063	1.2668	67.767	5	2	Median	24547000000	11734000000	12813000000	5642400000	2459200000	3183200000	5175300000	2730200000	2445100000	6430700000	2942100000	3488600000	7298600000	3602200000	3696400000	34551	1985	32696	212522;212523;212524;212525;212526;212527;212528;212529;212530;212531;212532;212533;212534;212535;212536;212537;212538;212539;212540;212541	286721;286722;286723;286724;286725;286726;286727;286728;286729;286730;286731;286732;286733;286734;286735;286736;286737;286738;286739;286740;286741;286742;286743;286744;286745;286746;286747;286748;286749;286750;286751;286752;286753;286754;286755;286756	286721			36	
LTPEEEEILNKK	2	Unmodified	1441.7664	0.76642482	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.98		6					1	2		1	2	2	4	46.178	41.832	2;3	3.0768E-06	35555	160511_QHF_FH_JSI12i_2	116.24	104.37			1.0523	1.1531	63.464	9	5	Median	1.8691	1.5866	NaN	1	1	Median	0.80405	0.9993	39.683	2	1	Median	0.80429	0.78994	129.5	2	1	Median	1.0129	1.0974	59.532	4	2	Median	966910000	445250000	521660000	160420000	79128000	81288000	328910000	152360000	176550000	10331000	5262400	5068900	467250000	208500000	258760000	34552	1985	32697	212542;212543;212544;212545;212546;212547;212548;212549;212550	286757;286758;286759;286760;286761;286762;286763;286764	286757			8	
LTPEELER	0	Unmodified	985.50803	0.50802529	691	O95399	UTS2	Urotensin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.26	4	4	2				2	4		4	5	3	4	36.331	32.397	2	0.00067397	27372	160511_QHF_FH_JSI12i_2	100.45	0			1.1294	1.1037	11.882	15	0	Median	1.2435	1.0099	7.9767	4	0	Median	0.80754	0.97388	10.479	4	0	Median	1.0832	1.1037	8.0274	3	0	Median	1.1343	1.2172	5.6097	4	0	Median	14572000000	7049900000	7521700000	2777400000	1074900000	1702600000	3925200000	2247100000	1678100000	4610700000	2245600000	2365100000	3258300000	1482400000	1775900000	34553	691	32698	212551;212552;212553;212554;212555;212556;212557;212558;212559;212560;212561;212562;212563;212564;212565;212566	286765;286766;286767;286768;286769;286770;286771;286772;286773;286774;286775;286776;286777;286778;286779;286780;286781;286782;286783;286784;286785;286786;286787;286788;286789;286790;286791;286792;286793;286794;286795	286767			31	
LTPEFSQR	0	Unmodified	976.49779	0.49779495	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	29.946	29.413	2	0.0012164	24792	160511_QHF_FH_JSI12i_2	92.47	55.377			0.9462	0.96241	26.695	8	0	Median	1.1681	0.99967	NaN	1	0	Median	0.7336	0.89029	5.6434	2	0	Median	0.87286	0.89395	30.848	3	0	Median	1.2772	1.3718	24.522	2	0	Median	2020300000	1079500000	940810000	299370000	156960000	142410000	487430000	313290000	174140000	811800000	410590000	401210000	421710000	198660000	223040000	34554	380	32699	212567;212568;212569;212570;212571;212572;212573;212574	286796;286797;286798;286799;286800;286801;286802;286803;286804;286805;286806;286807	286799			12	
LTPEQLHSMR	0	Unmodified	1210.6128	0.61284149	5529	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.54		4	10						4	4	4	3	7	34.153	31.849	2;3	2.9409E-05	26439	160511_QHF_FH_JSI10i_3	78.683	48.07			1.142	1.1536	51.611	15	8	Median	1.3194	1.1135	32.336	4	3	Median	0.91277	1.0386	73.247	3	0	Median	0.92733	0.8781	93.662	2	2	Median	1.2805	1.3741	47.765	6	3	Median	1474200000	748360000	725820000	225090000	101630000	123450000	327500000	206610000	120890000	219430000	101370000	118060000	702160000	338740000	363420000	34555	5529	32700	212575;212576;212577;212578;212579;212580;212581;212582;212583;212584;212585;212586;212587;212588;212589;212590;212591;212592	286808;286809;286810;286811;286812;286813;286814;286815;286816;286817;286818;286819;286820;286821;286822;286823;286824;286825;286826;286827;286828	286812			21	
LTPEQLHSMR	0	Oxidation (M)	1226.6078	0.60775611	5529	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	yes	yes	0	0	1	0		By matching		By MS/MS	15.7	0.471								1	2		1		2	28.64	20.067	3	0.0059336	10991	160513_QHF_FH_JSI12Kac_6	43.544	36.884			0.89021	0.96311	28.443	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2615	1.5116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84983	0.92762	5.3106	2	0	Median	20200000	9945300	10254000	0	0	0	7075500	3364000	3711400	0	0	0	13124000	6581300	6543000	34556	5529	32700	212593;212594;212595	286829	286829		2687	1	
LTPEWKK	2	Unmodified	900.5069	0.50690308	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							4	2	3	4	23.839	23.256	2;3	0.0025071	19578	160511_QHF_FH_JSI11i_3	77.058	44.587			0.7813	0.75524	108.37	13	5	Median	0.62763	0.52136	129.86	4	1	Median	1.2651	1.445	5.3675	2	0	Median	1.1916	1.1151	93.374	3	2	Median	0.71723	0.73216	149.6	4	2	Median	8725600000	4381800000	4343800000	1086500000	518870000	567670000	1339900000	674170000	665700000	2258000000	938180000	1319900000	4041100000	2250500000	1790600000	34557	2628	32701	212596;212597;212598;212599;212600;212601;212602;212603;212604;212605;212606;212607;212608	286830;286831;286832;286833;286834;286835;286836;286837;286838;286839;286840;286841;286842;286843;286844;286845;286846	286833			17	
LTPEYLELK	1	Unmodified	1104.6067	0.6066767	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	61.797	60.869	2	0.011918	52246	160511_QHF_FH_JSI12i_2	57.859	25.018			0.39373	0.39631	17.438	3	2	Plateau	0.41475	0.35169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.39373	0.39631	NaN	1	1	Median	0.44008	0.49583	NaN	1	1	Median	150240000	99367000	50874000	34459000	22347000	12113000	0	0	0	69157000	49747000	19411000	46625000	27274000	19351000	34558	533	32702	212609;212610;212611	286847;286848;286849	286847			2	
LTPEYLQLMK	1	Unmodified	1234.6631	0.66314572	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.068	73.201	2	6.23E-05	64102	160511_QHF_FH_JSI11i_2	90.657	81.794			1.156	1.1077	12.337	4	0	Median	1.1613	0.97574	NaN	1	0	Median	0.87191	1.047	NaN	1	0	Median	1.1515	1.1718	NaN	1	0	Median	1.1604	1.2908	NaN	1	0	Median	411190000	194010000	217190000	73067000	25953000	47114000	91959000	46908000	45051000	140360000	69010000	71346000	105810000	52136000	53676000	34559	622	32703	212612;212613;212614;212615	286850;286851;286852;286853;286854;286855;286856;286857	286854			8	
LTPFMLGALVAMYEHK	1	2 Oxidation (M)	1851.9263	0.92631306	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.21			6						11	3	4	6	4	95.252	89.296	3	3.0154E-24	48400	160513_QHF_FH_JSI10Kac_6	153.95	116.37			0.98664	0.97204	16.721	16	2	Median	1.1205	0.93259	2.4866	3	0	Plateau	0.83798	0.98184	4.7053	4	0	Median	1.0234	0.98127	27.606	6	2	Median	0.98533	1.0591	5.1952	3	0	Median	8867400000	4296700000	4570700000	2926100000	1350400000	1575700000	2539000000	1290000000	1249000000	1643900000	827010000	816920000	1758300000	829360000	928990000	34560	856	32704	212616;212617;212618;212619;212620;212621;212622;212623;212624;212625;212626;212627;212628;212629;212630;212631;212632	286858;286859;286860;286861;286862;286863;286864;286865;286866;286867;286868;286869;286870;286871;286872;286873;286874;286875;286876;286877;286878;286879	286879		387;388	22	
LTPFMLGALVAMYEHK	1	Oxidation (M)	1835.9314	0.93139843	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	4.68			6	5			1	1	26	9	9	11	10	95.775	88.311	2;3	5.8326E-33	48158	160513_QHF_FH_JSI9Kac_6	164.62	140.79			0.94331	0.95998	20.835	34	5	Median	1.1226	0.95467	18.286	8	2	Median	0.8725	1.0042	25.505	8	0	Median	1.0541	0.99805	25.193	11	1	Median	0.87201	0.90581	11.001	7	2	Median	56456000000	30236000000	26220000000	17103000000	9155000000	7947800000	9683800000	5176500000	4507300000	16895000000	8739000000	8156100000	12775000000	7165900000	5608700000	34561	856	32704	212633;212634;212635;212636;212637;212638;212639;212640;212641;212642;212643;212644;212645;212646;212647;212648;212649;212650;212651;212652;212653;212654;212655;212656;212657;212658;212659;212660;212661;212662;212663;212664;212665;212666;212667;212668;212669;212670;212671	286880;286881;286882;286883;286884;286885;286886;286887;286888;286889;286890;286891;286892;286893;286894;286895;286896;286897;286898;286899;286900;286901;286902;286903;286904;286905;286906;286907;286908;286909;286910;286911;286912;286913;286914;286915;286916;286917;286918;286919;286920;286921;286922;286923;286924;286925;286926;286927;286928;286929;286930;286931;286932	286908		387;388	53	
LTPFMLGALVAMYEHK	1	Unmodified	1819.9365	0.93648381	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	5.9		3	14	3	3	2	2	2	18	13	11	12	11	98.706	92.736	2;3	9.0692E-63	49728	160513_QHF_FH_JSI11Kac_6	241.52	227.49			0.92493	0.91085	64.148	42	16	Median	1.11	0.90243	79.279	10	5	Median	0.92705	1.0159	81.827	11	6	Median	0.82597	0.80055	47.754	10	2	Median	0.89257	0.95257	47.551	11	3	Median	258190000000	111950000000	146240000000	57639000000	22393000000	35246000000	73910000000	33377000000	40533000000	87502000000	38175000000	49327000000	39137000000	18006000000	21131000000	34562	856	32704	212672;212673;212674;212675;212676;212677;212678;212679;212680;212681;212682;212683;212684;212685;212686;212687;212688;212689;212690;212691;212692;212693;212694;212695;212696;212697;212698;212699;212700;212701;212702;212703;212704;212705;212706;212707;212708;212709;212710;212711;212712;212713;212714;212715;212716;212717;212718	286933;286934;286935;286936;286937;286938;286939;286940;286941;286942;286943;286944;286945;286946;286947;286948;286949;286950;286951;286952;286953;286954;286955;286956;286957;286958;286959;286960;286961;286962;286963;286964;286965;286966;286967;286968;286969;286970;286971;286972;286973;286974;286975;286976;286977;286978;286979;286980;286981;286982;286983;286984;286985;286986;286987;286988;286989;286990;286991;286992;286993;286994;286995;286996;286997;286998;286999;287000;287001;287002;287003;287004;287005;287006;287007	286944			74	
LTPGLYHLGR	0	Unmodified	1125.6295	0.62947783	3717	Q8TD43	TRPM4	Transient receptor potential cation channel subfamily M member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		66.947	58.131	3	0.014886	31831	160513_QHF_FH_JSI10Kac_6	26.673	0			0.88926	0.94359	13.037	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87517	1.0347	NaN	1	0	Median	0.90358	0.8605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74854000	32128000	42727000	0	0	0	25027000	13520000	11508000	49827000	18608000	31219000	0	0	0	34563	3717	32705	212719;212720	287008;287009;287010	287009			3	
LTPIHDR	0	Unmodified	850.4661	0.4661009	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	11.965	9.3345	2	0.0033031	7771	160511_QHF_FH_JSI12i_3	105.39	68.804			0.99471	1.0463	20.952	4	0	Median	1.7296	1.4033	NaN	1	0	Median	0.89824	1.0201	NaN	1	0	Median	1.1015	1.0731	NaN	1	0	Median	0.84521	0.84466	NaN	1	0	Median	2045400000	985990000	1059400000	380320000	133150000	247170000	690750000	356380000	334370000	11934000	5886700	6046900	962370000	490580000	471800000	34564	1302	32706	212721;212722;212723;212724	287011;287012	287012			2	
LTPILKNR	1	Acetyl (K)	995.61277	0.61276513	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.372	41.652	2	0.016384	22553	160513_QHF_FH_JSI11Kac_6	65.676	17.761			0.25319	0.24511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25319	0.24511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16717000	14165000	2552100	0	0	0	0	0	0	16717000	14165000	2552100	0	0	0	34565	542	32707	212725	287013	287013	284		1	
LTPITIFMEYR	0	Unmodified	1382.7268	0.72680861	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.836	82.527	2	0.00011551	44160	160513_QHF_FH_JSI12Kac_6	94.297	49.16			1.3142	1.2387	13.842	4	2	Median	1.319	1.1195	NaN	1	0	Median	0.89232	1.0696	NaN	1	0	Median	1.5227	1.4034	NaN	1	1	Median	1.3094	1.3706	NaN	1	1	Median	239730000	105810000	133920000	42138000	18921000	23218000	92250000	40599000	51650000	55291000	23628000	31662000	50051000	22662000	27389000	34566	859	32708	212726;212727;212728;212729	287014;287015;287016;287017	287016			4	
LTPITYPQGLAMAK	1	Unmodified	1502.8167	0.81668625	2045	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.093	72.468	2	0.0023554	63495	160511_QHF_FH_JSI11i_2	71.03	52.25			0.70235	0.71228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70235	0.71228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111030000	64466000	46566000	0	0	0	0	0	0	111030000	64466000	46566000	0	0	0	34567	2045	32709	212730	287018	287018			1	
LTPLEACAHSFFDELRDPNVK	1	Unmodified	2458.1951	0.19509435	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	94.086	94.083	4	0.0032651	83831	160511_QHF_FH_JSI11i_3	39.647	27.519			1.3918	1.3703	25.309	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.209	1.1458	NaN	1	0	Median	1.6022	1.6388	NaN	1	0	Median	42753000	18140000	24612000	0	0	0	0	0	0	26949000	10783000	16166000	15803000	7357400	8446100	34568	1689	32710	212731;212732	287019;287020	287019			2	
LTPLELK	1	Unmodified	812.50076	0.50075507	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		50.176	49.758	2	0.034446	45002	160511_QHF_FH_JSI11i_1	50.127	13.941			0.85303	0.91582	11.927	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83633	0.99641	NaN	1	0	Median	0.87007	0.84175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134220000	67813000	66405000	0	0	0	55015000	25264000	29751000	79203000	42549000	36654000	0	0	0	34569	678	32711	212733;212734	287021	287021			1	
LTPLGQHLAALPVNVK	1	Unmodified	1669.9879	0.98792576	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	3	2	3	72.72	71.801	2;3	4.3292E-11	62046	160511_QHF_FH_JSI12i_3	105.46	95.229			0.88381	0.88004	7.8361	7	7	Median	1.027	0.83448	7.5174	2	2	Median	0.69444	0.79313	9.0958	2	2	Median	0.96288	0.91523	NaN	1	1	Median	0.8769	0.90131	1.8562	2	2	Median	834490000	441980000	392500000	181140000	79638000	101500000	161910000	99244000	62668000	207000000	111330000	95676000	284430000	151770000	132650000	34570	3267	32712	212735;212736;212737;212738;212739;212740;212741;212742;212743;212744;212745	287022;287023;287024;287025;287026;287027;287028;287029;287030;287031;287032	287032			11	
LTPLGYHLASLPVDVR	0	Unmodified	1749.9778	0.977755	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.298	81.298	3	7.1213E-05	72627	160511_QHF_FH_JSI11i_3	70.96	59.69			1.4788	1.4026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4788	1.4026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54141000	20245000	33895000	0	0	0	0	0	0	54141000	20245000	33895000	0	0	0	34571	3087	32713	212746	287033	287033			1	
LTPLHLAVQAGSEIIVR	0	Unmodified	1816.0571	0.057067954	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.51	86.357	3	0.0012598	74905	160511_QHF_FH_JSI12i_3	50.653	47.033			0.65974	0.68674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65974	0.68674	NaN	1	1	Median	17613000	10446000	7166600	0	0	0	0	0	0	0	0	0	17613000	10446000	7166600	34572	5222	32714	212747	287034	287034			1	
LTPLILK	1	Unmodified	796.54223	0.54222595	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.589	57.93	2	0.012077	49562	160511_QHF_FH_JSI12i_3	75.311	20.785			0.91368	0.97077	20.894	6	2	Median	0.79834	0.67879	NaN	1	0	Median	0.66601	0.82485	NaN	1	0	Median	1.1026	1.078	13.26	2	1	Median	0.99567	1.0498	12.627	2	1	Median	1376200000	719540000	656700000	138920000	72838000	66082000	166360000	100990000	65366000	569110000	275600000	293520000	501850000	270120000	231740000	34573	2571	32715	212748;212749;212750;212751;212752;212753	287035;287036;287037;287038;287039;287040	287040			6	
LTPLLSVR	0	Unmodified	897.56475	0.56475231	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	56.184	55.292	2	0.0024197	47384	160511_QHF_FH_JSI12i_3	80.229	24.107			0.88991	0.94004	10.278	8	0	Median	1.2292	1.025	19.957	2	0	Median	0.79795	0.96172	0.34011	2	0	Median	0.92075	0.89145	6.9345	2	0	Median	0.83441	0.90138	6.5102	2	0	Median	1804200000	933710000	870460000	376880000	151100000	225770000	404680000	228420000	176260000	466590000	240770000	225830000	556010000	313420000	242600000	34574	4521	32716	212754;212755;212756;212757;212758;212759;212760;212761	287041;287042;287043;287044;287045;287046;287047	287047			7	
LTPLPEDNSMNVDQDGDPSDR	0	Unmodified	2314.0019	0.0019334331	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.275	56.622	2	1.223E-12	51347	160511_QHF_FH_JSI12i_1	120.3	112.58			0.87799	0.86013	7.8958	4	1	Median	1.0847	0.88499	NaN	1	1	Median	0.72199	0.83597	NaN	1	0	Median	0.81995	0.79877	NaN	1	0	Median	0.94013	0.95932	NaN	1	0	Median	138240000	76809000	61432000	21613000	9827000	11786000	39068000	23577000	15491000	45569000	24566000	21002000	31991000	18838000	13152000	34575	2094	32717	212762;212763;212764;212765	287048;287049;287050;287051;287052;287053;287054	287050			7	
LTPLQLEIQR	0	Unmodified	1209.7081	0.70812208	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	66.875	66.356	2	0.0010217	59064	160511_QHF_FH_JSI11i_3	68.371	51.533			1.1677	1.1727	14.522	5	0	Median	1.1677	0.98996	NaN	1	0	Median	0.96286	1.173	NaN	1	0	Median	1.1614	1.1591	1.6522	2	0	Median	1.4759	1.4842	NaN	1	0	Median	374930000	166060000	208870000	52316000	22248000	30068000	84416000	41737000	42679000	159290000	70552000	88739000	78907000	31524000	47383000	34576	3499	32718	212766;212767;212768;212769;212770	287055;287056;287057;287058;287059	287055			5	
LTPLSHEVISR	0	Unmodified	1250.6983	0.69828568	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.68		8	8					1	4	7	4	4	6	39.428	36.446	2;3	9.2446E-08	31906	160511_QHF_FH_JSI11i_3	117.98	78.828			0.83794	0.76879	25.383	21	4	Median	1.0325	0.85627	24.985	7	3	Median	0.88612	1.0447	18.741	4	0	Median	0.71565	0.68703	29.142	4	1	Median	0.69465	0.57518	28.007	6	0	Linear	9718100000	5212500000	4505600000	1929200000	936960000	992280000	3091900000	1805500000	1286300000	2577300000	1363700000	1213600000	2119700000	1106300000	1013400000	34577	1508	32719	212771;212772;212773;212774;212775;212776;212777;212778;212779;212780;212781;212782;212783;212784;212785;212786;212787;212788;212789;212790;212791	287060;287061;287062;287063;287064;287065;287066;287067;287068;287069;287070;287071;287072;287073;287074;287075;287076;287077;287078;287079;287080;287081;287082;287083;287084;287085;287086;287087	287062			27	
LTPMEALLQTR	0	Unmodified	1271.6908	0.69075746	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.869	81.66	2	0.053752	70828	160511_QHF_FH_JSI12i_3	42.743	23.472			1.4563	1.475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4563	1.475	NaN	1	1	Median	34859000	14268000	20590000	0	0	0	0	0	0	0	0	0	34859000	14268000	20590000	34578	4936	32720	212792	287088	287088			1	
LTPNAGSDR	0	Unmodified	929.45666	0.45665842	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	9.7518	9.3071	2	0.0065549	7122	160511_QHF_FH_JSI10i_1	55.531	23.417			1.0179	1.1379	17.77	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86054	1.0035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2041	1.2903	NaN	1	1	Median	197860000	101280000	96574000	0	0	0	155710000	84316000	71393000	0	0	0	42147000	16967000	25181000	34579	1685	32721	212793;212794;212795	287089;287090;287091	287091			3	
LTPQAFSHFTFER	0	Unmodified	1579.7783	0.77832691	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			70.746	69.283	3	0.00029458	58071	160511_QHF_FH_JSI10i_3	61.212	57.152			0.89038	1.0158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89038	1.0158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36367000	18729000	17637000	0	0	0	36367000	18729000	17637000	0	0	0	0	0	0	34580	129	32722	212796	287092	287092			1	
LTPQAVK	1	Unmodified	755.45414	0.45413923	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.6	4.72		3	1				1			2		2	1	17.94	15.769	2	0.018617	10331	160513_QHF_FH_JSI11Kac_4	71.715	20.749			1.0435	1.0673	27.787	5	1	Median	1.3967	1.1729	3.9308	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79648	0.80226	40.376	2	0	Median	0.8546	0.96798	NaN	1	0	Median	1051200000	499560000	551600000	341500000	141640000	199860000	0	0	0	418890000	193380000	225510000	290770000	164540000	126230000	34581	832	32723	212797;212798;212799;212800;212801	287093;287094;287095;287096;287097	287094			5	
LTPQGQR	0	Unmodified	798.4348	0.43480077	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.32	4	4	2				3	4		3	4	5	5	7.5612	3.68	2	0.0039291	4350	160511_QHF_FH_JSI12i_3	101.33	36.066			0.97361	0.95988	28.337	17	0	Median	1.0838	0.9014	42.539	3	0	Median	0.92472	1.1089	14.871	4	0	Median	1.0073	1.0185	26.468	5	0	Median	0.8181	0.88786	27.306	5	0	Median	18426000000	10206000000	8220900000	3415900000	1897600000	1518300000	4307200000	2449200000	1857900000	5494200000	2811600000	2682600000	5209200000	3047100000	2162100000	34582	1483	32724	212802;212803;212804;212805;212806;212807;212808;212809;212810;212811;212812;212813;212814;212815;212816;212817;212818	287098;287099;287100;287101;287102;287103;287104;287105;287106;287107;287108;287109;287110;287111;287112;287113;287114;287115;287116;287117;287118;287119;287120	287120			23	
LTPQHDQIQTQPLGK	1	Unmodified	1702.9002	0.90023296	4904	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	33.539	32.779	3	0.00093924	27814	160511_QHF_FH_JSI12i_2	63.185	44.127			1.3911	1.3932	6.5122	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4785	1.3305	NaN	1	1	Median	1.3088	1.4589	NaN	1	1	Median	54862000	20394000	34468000	0	0	0	9386400	0	9386400	33780000	15260000	18519000	11696000	5133200	6562800	34583	4904	32725	212819;212820;212821	287121;287122;287123	287122			3	
LTPQMFNQLMK	1	Unmodified	1349.6836	0.68356359	334	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	78.462	77.449	2	4.5118E-05	67193	160511_QHF_FH_JSI12i_3	103.56	63.212			1.6377	1.6439	33.905	3	2	Median	2.7007	2.2459	NaN	1	1	Median	0.96915	1.1408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6377	1.6439	NaN	1	1	Median	75451000	31694000	43757000	13078000	4331100	8747300	16223000	8865600	7357200	0	0	0	46149000	18497000	27652000	34584	334	32726	212822;212823;212824	287124;287125;287126	287126			3	
LTPQMFQQLMK	1	Oxidation (M)	1379.6941	0.69412828	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							3	2	3	3	70.369	69.623	2	0.00033355	56210	160511_QHF_FH_JSI12i_3	100.57	89.811			0.92437	1.0051	31.356	11	4	Median	2.3831	1.9186	62.975	3	1	Plateau	0.89616	1.0186	1.8776	2	1	Median	0.90927	0.82104	24.93	3	1	Median	0.94838	0.93957	13.548	3	1	Median	759380000	357990000	401390000	128520000	57338000	71178000	87580000	41726000	45854000	187140000	97599000	89545000	356140000	161330000	194810000	34585	2217	32727	212825;212826;212827;212828;212829;212830;212831;212832;212833;212834;212835	287127;287128;287129;287130;287131;287132;287133;287134;287135	287135		1845;1846	9	
LTPQMFQQLMK	1	Unmodified	1363.6992	0.69921365	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	3	3	3	83.051	80.607	2	1.6898E-09	69116	160511_QHF_FH_JSI10i_3	133.23	113.46			0.9133	0.88947	28.578	9	1	Median	1.5049	1.2333	60.486	2	1	Median	0.66564	0.79443	18.026	2	0	Median	0.9133	0.88947	10.255	3	0	Median	0.8633	0.92107	12.468	2	0	Median	4581300000	2273500000	2307800000	663240000	313950000	349280000	758070000	403550000	354520000	1251900000	648040000	603870000	1908100000	907950000	1000100000	34586	2217	32727	212836;212837;212838;212839;212840;212841;212842;212843;212844;212845;212846;212847	287136;287137;287138;287139;287140;287141;287142;287143;287144;287145;287146;287147;287148;287149;287150;287151;287152;287153;287154;287155;287156;287157;287158;287159;287160	287140			25	
LTPRPTAAELEEVLQVNSLIQTQK	1	Unmodified	2677.465	0.46504485	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.83	0.373		1	5							3	2	1		100.83	100.69	3;4	5.2865E-42	83299	160511_QHF_FH_JSI10i_3	189.33	181.62			0.97107	0.85432	5.9335	6	0	Median	1.0132	0.84388	5.477	3	0	Median	0.72554	0.829	5.9925	2	0	Median	0.98605	0.92487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	681510000	374110000	307410000	308520000	160640000	147880000	231000000	142230000	88778000	141990000	71240000	70747000	0	0	0	34587	4399	32728	212848;212849;212850;212851;212852;212853	287161;287162;287163;287164;287165;287166;287167;287168;287169;287170	287162			10	
LTPSAGK	1	Unmodified	672.38064	0.38063993	1576	P46013	MKI67	Antigen KI-67	yes	no	0	0	0	0				By MS/MS	2	0		1											1	9.2351	8.5815	2	0.033424	6165	160511_QHF_FH_JSI12i_2	50.632	20.825			0.94787	1.0429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94787	1.0429	NaN	1	0	Median	1385500000	744140000	641350000	0	0	0	0	0	0	0	0	0	1385500000	744140000	641350000	34588	1576	32729	212854	287171	287171			1	
LTPSGYEWGR	0	Unmodified	1164.5564	0.55637247	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	44.753	44.117	2	0.0027986	38849	160511_QHF_FH_JSI11i_3	57.708	41.505			1.2495	1.1004	13.232	5	0	Median	1.2495	1.1004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1827	1.164	16.498	2	0	Median	1.0993	1.1672	20.04	2	0	Median	955440000	430450000	524990000	127870000	63848000	64017000	0	0	0	449450000	189740000	259710000	378130000	176860000	201270000	34589	3101	32730	212855;212856;212857;212858;212859	287172;287173;287174;287175;287176	287172			5	
LTPTEVK	1	Unmodified	786.44872	0.4487195	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	19.641	19.059	2	0.032001	15992	160511_QHF_FH_JSI9i_1	51.335	28.406			1.0787	1.049	8.3957	5	0	Median	1.3101	1.0989	15.317	2	0	Median	0.84933	1.0233	NaN	1	0	Median	1.0787	1.049	NaN	1	0	Median	1.0273	1.1047	NaN	1	0	Median	1954000000	907070000	1047000000	576490000	230960000	345530000	608520000	311240000	297290000	381290000	162650000	218640000	387730000	202230000	185500000	34590	1265	32731	212860;212861;212862;212863;212864	287177;287178;287179;287180	287179			4	
LTPTGHNMK	1	Unmodified	997.5015	0.50150012	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	9.6042	9.3588	3	0.020215	7069	160511_QHF_FH_JSI10i_3	28.696	18.282			0.81137	0.89827	23.917	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89957	1.0638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73181	0.75851	NaN	1	0	Median	54844000	33025000	21819000	0	0	0	15311000	8590400	6720500	0	0	0	39533000	24435000	15098000	34591	4219	32732	212865;212866	287181	287181			1	
LTPTHGEMR	0	Unmodified	1040.5073	0.50731378	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	10.442	10.184	2;3	0.00017868	7499	160511_QHF_FH_JSI12i_3	86.833	62.861			0.98008	0.98907	16.952	9	0	Median	1.4391	1.2209	NaN	1	0	Median	0.7048	0.85163	6.1907	2	0	Median	1.2765	1.1756	5.4531	3	0	Plateau	0.93699	0.97014	15.518	3	0	Median	1582200000	829490000	752710000	90037000	37160000	52876000	206520000	123520000	83000000	570180000	289310000	280870000	715480000	379510000	335970000	34592	3634	32733	212867;212868;212869;212870;212871;212872;212873;212874;212875	287182;287183;287184;287185;287186;287187;287188;287189	287188			8	
LTPTHGEMRK	1	Unmodified	1168.6023	0.6022768	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			8.5137	7.9425	2;4	0.034345	5651	160511_QHF_FH_JSI9i_3	39.022	5.7594			0.70849	0.69248	30.905	4	0	Median	1.1648	0.94339	21.192	2	0	Median	0.49738	0.57762	3.1129	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	411090000	241820000	169270000	231220000	123040000	108180000	179870000	118770000	61095000	0	0	0	0	0	0	34593	3634	32734	212876;212877;212878;212879	287190;287191	287191			1	
LTPTSVLDYFGTGSVQR	0	Unmodified	1839.9367	0.93667805	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	4	4	3	96.14	95.946	2;3	1.8151E-08	82975	160511_QHF_FH_JSI12i_3	101.42	92.871			0.86696	0.92997	23.34	12	4	Median	1.0753	0.93243	19.67	2	0	Median	0.76651	0.86638	5.8142	4	2	Linear	1.013	0.91701	10.497	3	1	Plateau	1.0628	1.0252	46.994	3	1	Plateau	249480000	132750000	116730000	25895000	13238000	12657000	50254000	30926000	19328000	90205000	46214000	43991000	83124000	42372000	40752000	34594	1430	32735	212880;212881;212882;212883;212884;212885;212886;212887;212888;212889;212890;212891;212892	287192;287193;287194;287195;287196;287197;287198;287199;287200;287201;287202;287203;287204;287205;287206;287207;287208;287209;287210;287211;287212	287210			21	
LTPVLLAK	1	Unmodified	853.56369	0.56368968	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	54.843	54.107	2	0.0034924	47649	160511_QHF_FH_JSI9i_2	72.138	35.953			1.0633	1.0209	11.21	9	0	Median	1.1267	0.93855	1.4966	2	0	Median	0.89255	1.1008	10.882	3	0	Median	1.0633	1.0209	10.465	3	0	Median	1.2015	1.2178	NaN	1	0	Median	1164100000	571360000	592700000	232700000	106130000	126580000	300830000	162630000	138190000	461470000	226110000	235360000	169060000	76484000	92576000	34595	2441	32736	212893;212894;212895;212896;212897;212898;212899;212900;212901	287213;287214;287215;287216;287217;287218;287219;287220;287221;287222	287219			10	
LTPVPDSFFAK	1	Unmodified	1220.6441	0.64412484	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		74.277	73.647	2	0.011189	64756	160511_QHF_FH_JSI11i_2	46.406	20.022			0.83405	0.85663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83405	0.85663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	158730000	87644000	71091000	0	0	0	0	0	0	158730000	87644000	71091000	0	0	0	34596	623	32737	212902	287223	287223			1	
LTPVSPESSSTEEK	1	Unmodified	1489.7148	0.71478318	2427	Q13501	SQSTM1	Sequestosome-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	29.779	26.5	2	2.2943E-06	23505	160511_QHF_FH_JSI11i_1	143.97	120.65			0.89286	0.93795	4.0495	6	0	Median	1.212	0.98923	NaN	1	0	Median	0.82293	0.97255	NaN	1	0	Median	0.93532	0.91304	3.9572	2	0	Median	0.85512	0.92247	2.2042	2	0	Median	649240000	346940000	302290000	172250000	82995000	89253000	144410000	87429000	56985000	122810000	70601000	52212000	209760000	105920000	103850000	34597	2427	32738	212903;212904;212905;212906;212907;212908	287224;287225;287226;287227;287228;287229;287230;287231;287232;287233;287234;287235;287236;287237;287238	287226			15	
LTPYEVDELRR	0	Unmodified	1389.7252	0.72522871	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.24		8	4						5	2	3	6	6	49.546	46.97	2;3	6.3113E-18	41514	160511_QHF_FH_JSI11i_3	178.55	140.99			1.0757	1.0517	13.338	14	2	Median	1.0757	0.90183	4.2958	2	0	Median	0.80627	0.98487	7.5202	2	1	Median	1.1844	1.1505	11.345	5	0	Median	0.99382	1.0648	11.637	5	1	Median	5101900000	2751700000	2350200000	424150000	192430000	231710000	696860000	413110000	283750000	2193700000	1139100000	1054600000	1787200000	1007100000	780120000	34598	3893	32739	212909;212910;212911;212912;212913;212914;212915;212916;212917;212918;212919;212920;212921;212922;212923;212924;212925	287239;287240;287241;287242;287243;287244;287245;287246;287247;287248;287249;287250;287251;287252;287253;287254;287255;287256;287257;287258;287259;287260;287261	287242			23	
LTQAQIFDYGEIPNFPR	0	Unmodified	2008.0054	0.005426314	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.676	3	9	5							3	3	6	5	95.863	95.674	2;3	1.3039E-37	84044	160511_QHF_FH_JSI11i_2	289.65	265.36			0.9787	1.0275	15.734	17	8	Median	1.2946	1.0947	6.2238	3	2	Plateau	0.88044	1.1053	5.5192	3	2	Plateau	0.9883	1.0034	25.366	6	3	Median	0.97462	1.0459	6.9797	5	1	Median	974430000	499030000	475400000	225760000	107790000	117970000	197470000	109540000	87934000	332290000	173290000	159000000	218910000	108400000	110500000	34599	771	32740	212926;212927;212928;212929;212930;212931;212932;212933;212934;212935;212936;212937;212938;212939;212940;212941;212942	287262;287263;287264;287265;287266;287267;287268;287269;287270;287271;287272;287273;287274;287275;287276;287277;287278;287279;287280;287281;287282;287283;287284;287285;287286	287281			25	
LTQDAVAK	1	Unmodified	844.46543	0.46543219	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	13.154	10.488	2	0.0032112	6922	160513_QHF_FH_JSI11Kac_3	87.181	14.392			1.1938	1.2179	33.9	6	1	Median	1.2337	1.003	NaN	1	0	Median	1.0575	1.2586	NaN	1	0	Median	1.0043	0.97621	27.567	2	0	Median	1.5474	1.6667	40.652	2	1	Median	2767700000	1291000000	1476700000	652050000	269780000	382270000	727970000	361330000	366650000	622950000	333410000	289540000	764770000	326490000	438280000	34600	5486	32741	212943;212944;212945;212946;212947;212948	287287;287288;287289;287290;287291;287292;287293;287294	287289			8	
LTQDEIISK	1	Unmodified	1045.5655	0.56554017	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		34.121	33.378	2	0.0033938	30014	160511_QHF_FH_JSI11i_1	60.518	39.244			1.4295	1.2857	48.314	2	1	Median	2.1935	1.8093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93158	0.91366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	170930000	84674000	86253000	75702000	32378000	43324000	0	0	0	95225000	52296000	42929000	0	0	0	34601	2258	32742	212949;212950	287295;287296;287297;287298	287297			4	
LTQDPIQVLLIFAK	1	Unmodified	1597.9443	0.94432961	668	O95263	PDE8B	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	98.222	88.893	2	1.4257E-30	50816	160513_QHF_FH_JSI11Kac_6	160.52	129.97			0.88935	0.76318	5.3504	3	3	Median	0.9085	0.76318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88935	0.8355	NaN	1	1	Median	0.71852	0.76003	NaN	1	1	Median	439330000	322120000	117210000	170220000	139170000	31046000	0	0	0	139700000	79911000	59788000	129410000	103040000	26376000	34602	668	32743	212951;212952;212953;212954;212955	287299;287300;287301;287302;287303	287300			5	
LTQDQDVDVK	1	Unmodified	1159.5721	0.57208211	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	1	2	3	22.551	19.109	2	8.0718E-11	16411	160511_QHF_FH_JSI10i_1	163.66	96.971			0.89438	0.933	12.26	7	0	Median	1.301	1.068	NaN	1	0	Median	0.65021	0.76392	NaN	1	0	Median	0.91905	0.89903	5.2448	2	0	Median	0.8041	0.85325	11.056	3	0	Plateau	3281500000	1736700000	1544800000	818130000	409120000	409010000	973220000	547730000	425490000	747480000	406020000	341460000	742720000	373860000	368860000	34603	1345	32744	212956;212957;212958;212959;212960;212961;212962	287304;287305;287306;287307;287308;287309;287310;287311;287312	287309			9	
LTQEETNFK	1	Unmodified	1108.5401	0.5400537	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.793	21.266	2	3.1361E-06	18269	160511_QHF_FH_JSI11i_1	123.98	100.55			0.92096	1.0002	27.87	4	0	Median	1.608	1.3412	NaN	1	0	Median	0.88426	1.0559	NaN	1	0	Median	0.95919	0.94734	NaN	1	0	Median	0.6525	0.68538	NaN	1	0	Median	824170000	435740000	388440000	211170000	78091000	133080000	186230000	111260000	74963000	196680000	115890000	80791000	230090000	130490000	99602000	34604	4989	32745	212963;212964;212965;212966	287313;287314;287315;287316;287317;287318;287319	287314			7	
LTQEPESIRK	1	Unmodified	1199.651	0.65100113	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.23	4.61		8	3					2		3	3	5	2	15.817	13.819	2;3	1.1947E-05	11653	160511_QHF_FH_JSI9i_2	82.171	50.74			0.98537	0.96646	22.13	11	2	Median	1.2065	1.0456	4.1494	3	0	Plateau	0.73343	0.90479	14.126	2	1	Median	0.98537	0.95366	24.001	5	1	Median	0.61419	0.63231	NaN	1	0	Median	1647100000	932770000	714290000	238900000	106550000	132350000	242400000	143150000	99253000	890770000	489840000	400930000	274990000	193230000	81757000	34605	931	32746	212967;212968;212969;212970;212971;212972;212973;212974;212975;212976;212977;212978;212979	287320;287321;287322;287323;287324;287325;287326;287327;287328;287329;287330;287331;287332;287333;287334;287335;287336	287328			17	
LTQGETLRK	1	Unmodified	1044.5928	0.59275797	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	3	2	2	10.567	10.198	2;3	0.00016464	7816	160511_QHF_FH_JSI10i_3	76.17	49.755			0.90986	0.85109	21.044	10	1	Median	0.98882	0.80295	25.279	3	1	Median	0.84265	1.0056	16.932	3	0	Median	0.90986	0.91421	1.8823	2	0	Median	0.64455	0.65469	5.8921	2	0	Median	2011000000	1048700000	962240000	346160000	131160000	215000000	830210000	469810000	360400000	574710000	292040000	282670000	259880000	155710000	104170000	34606	2664	32747	212980;212981;212982;212983;212984;212985;212986;212987;212988;212989	287337;287338;287339;287340;287341;287342;287343;287344;287345;287346	287339			10	
LTQILSYLR	0	Unmodified	1105.6495	0.64954457	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			76.822	70.572	2	4.3976E-06	38606	160513_QHF_FH_JSI10Kac_6	130.56	63.569			0.47198	0.5534	70.312	2	2	Median	NaN	NaN	NaN	0	0	Median	0.47198	0.5534	70.312	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	399250000	269170000	130080000	0	0	0	399250000	269170000	130080000	0	0	0	0	0	0	34607	2353	32748	212990;212991	287347;287348	287348			2	
LTQIQESQVTSHNK	1	Unmodified	1611.8216	0.82164829	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.23		5	2					1		1	1	3	3	22.681	20.537	2;3	3.4923E-05	16761	160511_QHF_FH_JSI12i_3	97.2	86.256			0.72993	0.72175	39.858	5	3	Median	1.4523	1.2407	NaN	1	0	Median	0.55859	0.68319	NaN	1	1	Median	0.72993	0.72175	NaN	1	1	Median	0.60561	0.63559	56.341	2	1	Median	211700000	119420000	92287000	37739000	12561000	25179000	44581000	29205000	15375000	27646000	20438000	7208800	101740000	57211000	44524000	34608	3839	32749	212992;212993;212994;212995;212996;212997;212998;212999	287349;287350;287351;287352;287353;287354;287355;287356	287356			8	
LTQLGTFEDHFLSLQR	0	Unmodified	1903.9792	0.97921156	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	84.497	84.411	2;3	1.6825E-08	75335	160511_QHF_FH_JSI11i_3	133.45	117.05			1.2315	1.2167	22.339	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5336	1.4371	20.61	2	2	Median	1.0459	1.0732	14.821	2	1	Median	504270000	212630000	291640000	0	0	0	0	0	0	230340000	96873000	133470000	273930000	115750000	158180000	34609	774	32750	213000;213001;213002;213003	287357;287358;287359;287360;287361	287358			5	
LTQQLEEER	0	Unmodified	1144.5724	0.57241646	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	19.073	18.273	2	0.001485	15277	160511_QHF_FH_JSI9i_1	68.847	40.965			1.0371	0.95385	38.4	2	1	Median	1.5189	1.2514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70815	0.72703	NaN	1	1	Median	194350000	94358000	99991000	93504000	46995000	46510000	0	0	0	0	0	0	100840000	47363000	53481000	34610	8	32751	213004;213005	287362;287363;287364	287363			3	
LTQSLDSDKPMEPVK	2	Unmodified	1686.8498	0.84983687	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	37.626	36.274	3	0.011954	30932	160511_QHF_FH_JSI12i_2	46.964	35.694			0.7259	0.79044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7259	0.79044	NaN	1	1	Median	25307000	16785000	8522100	0	0	0	0	0	0	0	0	0	25307000	16785000	8522100	34611	3200	32752	213006	287365	287365			1	
LTQTSGETTHTDKEPVGEGK	2	Unmodified	2114.0128	0.012756116	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		3	2	13.118	13.035	3;4	1.921E-06	10088	160511_QHF_FH_JSI12i_3	92.31	72.219			1.6061	1.5109	60.992	6	5	Median	1.3802	1.2061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.0375	3.774	89.806	3	3	Plateau	1.4509	1.4723	35.514	2	1	Median	711980000	202570000	509400000	57502000	28125000	29377000	0	0	0	500950000	112870000	388080000	153520000	61578000	91944000	34612	1576	32753	213007;213008;213009;213010;213011;213012	287366;287367;287368;287369;287370;287371;287372	287372			7	
LTQTSGETTHTHTEPTGDGK	1	Unmodified	2096.9611	0.9610549	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	2	3	3	9.1896	8.9483	3;4	2.5803E-10	6399	160511_QHF_FH_JSI12i_3	118.54	114.9			0.91954	0.91657	17.967	9	1	Median	1.0301	0.87368	NaN	1	0	Median	0.64845	0.79524	1.8806	2	0	Median	1.3459	1.2692	19.319	3	0	Median	0.92859	0.91902	5.8058	3	1	Plateau	842720000	406260000	436450000	51275000	22511000	28763000	149970000	96384000	53589000	307990000	124890000	183110000	333480000	162480000	171000000	34613	1576	32754	213013;213014;213015;213016;213017;213018;213019;213020;213021	287373;287374;287375;287376;287377;287378;287379;287380;287381;287382;287383;287384;287385	287385			13	
LTQTSGQSTHTHK	1	Unmodified	1424.7008	0.70080487	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	10.8	6.37			2						3	1		3	1	4.9471	-0.88652	3	5.1332E-05	2257	160511_QHF_FH_JSI11i_3	72.891	57.135			1.3521	1.398	40.914	4	0	Median	0.89733	0.78924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7272	1.6686	33.882	2	0	Median	1.2918	1.4884	NaN	1	0	Median	391200000	156510000	234680000	1775000	967220	807780	0	0	0	387070000	154460000	232600000	2355700	1083400	1272300	34614	1576	32755	213022;213023;213024;213025;213026	287386;287387;287388;287389	287387			4	
LTQTSGQSTHTHKEPASGDEGIK	2	Acetyl (K)	2450.1674	0.16735928	1576	P46013	MKI67	Antigen KI-67	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		26.647	17.182	4	0.012355	11150	160513_QHF_FH_JSI11Kac_5	34.155	28.826			0.47112	0.47091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47112	0.47091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8554700	5675700	2879100	0	0	0	0	0	0	8554700	5675700	2879100	0	0	0	34615	1576	32756	213027	287390	287390	1589		1	
LTQTSSTEQLNVLETETEVLNK	1	Unmodified	2476.2544	0.25444295	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	3	2	84.618	84.21	2;3	3.2215E-59	76443	160511_QHF_FH_JSI10i_1	260.25	219.7			1.1079	1.0538	25.587	6	2	Median	1.1113	0.90542	NaN	1	0	Median	0.81399	0.94075	7.753	2	1	Median	1.1548	1.1174	NaN	1	0	Median	1.3917	1.4199	32.253	2	1	Median	315400000	157110000	158290000	35448000	17876000	17571000	115950000	72009000	43945000	84742000	32420000	52322000	79256000	34803000	44453000	34616	2902	32757	213028;213029;213030;213031;213032;213033;213034;213035	287391;287392;287393;287394;287395;287396;287397;287398;287399;287400;287401;287402	287400			12	
LTQTVAHLK	1	Unmodified	1009.592	0.59202969	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.9		12	14					1	4	7	10	8	6	19.829	18.192	2;3	0.00028923	10679	160513_QHF_FH_JSI11Kac_6	74.841	53.469			0.88935	0.89647	119.58	30	27	Median	0.77695	0.65879	133.64	7	6	Median	1.458	1.7695	93.518	9	9	Median	1.6567	1.661	158.7	8	7	Median	0.63539	0.65935	103.21	6	5	Median	22688000000	10238000000	12450000000	2272400000	1064400000	1208000000	3884400000	2080700000	1803700000	6917500000	2970800000	3946700000	9613500000	4121600000	5491800000	34617	828	32758	213036;213037;213038;213039;213040;213041;213042;213043;213044;213045;213046;213047;213048;213049;213050;213051;213052;213053;213054;213055;213056;213057;213058;213059;213060;213061;213062;213063;213064;213065;213066	287403;287404;287405;287406;287407;287408;287409;287410;287411;287412;287413;287414;287415;287416;287417;287418;287419;287420;287421;287422;287423;287424;287425;287426;287427;287428;287429;287430;287431;287432;287433;287434;287435	287413			33	
LTQVLNTHYVAPR	0	Unmodified	1510.8256	0.82561145	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		4	10						2	5	5	5	1	44.027	41.959	2;3	4.9233E-07	35143	160511_QHF_FH_JSI10i_3	114.7	96.128			0.78142	0.83641	57.311	15	11	Median	0.78142	0.65918	61.404	5	3	Median	0.54431	0.64089	79.154	4	4	Median	1.2367	1.1925	39.905	5	4	Median	0.61067	0.62268	NaN	1	0	Median	1513100000	819630000	693460000	438450000	215870000	222580000	307270000	185820000	121450000	522980000	251220000	271760000	244390000	166720000	77671000	34618	1736;1737	32759	213067;213068;213069;213070;213071;213072;213073;213074;213075;213076;213077;213078;213079;213080;213081;213082	287436;287437;287438;287439;287440;287441;287442;287443;287444;287445;287446;287447;287448;287449;287450;287451;287452;287453	287442			18	
LTQYHGGSLPNVSQLR	0	Unmodified	1768.922	0.92203104	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			51.498	50.131	2;3	3.2266E-05	41857	160511_QHF_FH_JSI10i_3	82.007	68.87			0.85045	1.0213	3.7494	3	0	Median	1.2229	1.0213	NaN	1	0	Median	0.84668	1.0095	5.2161	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196070000	97984000	98085000	101550000	46621000	54926000	94523000	51364000	43159000	0	0	0	0	0	0	34619	3144	32760	213083;213084;213085;213086	287454;287455;287456;287457;287458	287455			5	
LTQYIDGQGRPR	0	Unmodified	1402.7317	0.73171107	2439	Q13555;Q13554	CAMK2G;CAMK2B	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta	yes	no	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		2	4							3	3			23.34	22.184	3	0.00016239	18226	160511_QHF_FH_JSI10i_3	80.979	68.353			0.81983	0.8493	39.719	6	6	Median	0.9613	0.8384	35.151	3	3	Median	0.69918	0.86035	50.585	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	317190000	176010000	141180000	148290000	76463000	71830000	168900000	99544000	69351000	0	0	0	0	0	0	34620	2439	32761	213087;213088;213089;213090;213091;213092	287459;287460;287461;287462;287463;287464	287460			6	
LTRDETNYGIPQR	0	Unmodified	1561.7849	0.78486885	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.01		8	9					5	3	6	6	7	6	32.036	28.401	2;3	5.6882E-52	24929	160511_QHF_FH_JSI10i_2	223.71	198.32			1.0319	1.0261	17.337	25	3	Median	1.3031	1.0894	10.38	6	0	Median	0.89431	1.0815	15.897	6	2	Median	1.1889	1.2211	22.934	7	1	Median	0.87389	0.91122	11.178	6	0	Median	13058000000	6512000000	6545600000	3840600000	1474700000	2365900000	6998400000	3964000000	3034400000	1656100000	805090000	850960000	562460000	268130000	294330000	34621	2061	32762	213093;213094;213095;213096;213097;213098;213099;213100;213101;213102;213103;213104;213105;213106;213107;213108;213109;213110;213111;213112;213113;213114;213115;213116;213117	287465;287466;287467;287468;287469;287470;287471;287472;287473;287474;287475;287476;287477;287478;287479;287480;287481;287482;287483;287484;287485;287486;287487;287488;287489;287490;287491;287492;287493;287494;287495;287496;287497;287498;287499;287500;287501;287502;287503;287504;287505;287506	287497			42	
LTREEGTPLTLYYSHWR	0	Unmodified	2121.0643	0.064338176	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	71.656	62.773	3;4	3.3637E-07	34260	160513_QHF_FH_JSI10Kac_6	105.9	97.253			0.93994	1.1183	1.6537	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93994	1.1189	NaN	1	0	Median	1.1715	1.1183	NaN	1	0	Median	1.0219	1.087	NaN	1	0	Median	98316000	47512000	50804000	0	0	0	38557000	19321000	19236000	29560000	13913000	15648000	30198000	14278000	15920000	34622	5603	32763	213118;213119;213120	287507;287508;287509	287509			3	
LTSAIAK	1	Unmodified	702.42759	0.42759012	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	2		1	14.842	14.263	2	0.048713	11772	160511_QHF_FH_JSI10i_1	43.124	13.785			0.61639	0.94758	10.756	4	0	Linear	1.1898	0.98697	NaN	1	0	Median	0.71121	0.8644	14.865	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89293	0.93512	NaN	1	0	Median	979680000	559440000	420240000	114760000	63938000	50819000	666840000	376740000	290100000	0	0	0	198080000	118760000	79322000	34623	3343	32764	213121;213122;213123;213124	287510;287511	287510			2	
LTSAKELPYFEGDFWPNVLEESIK	2	Acetyl (K)	2853.4113	0.41127794	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	1	0	0	1	By matching		By MS/MS	By matching	16	0									3	1		1	1	97.807	88.487	3	1.3055E-10	50563	160513_QHF_FH_JSI11Kac_6	85.849	74.537			0.84441	0.88962	10.982	3	0	Plateau	1.2764	1.0819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.093	1.0312	NaN	1	0	Median	0.8353	0.8773	NaN	1	0	Median	213090000	107730000	105370000	41818000	22801000	19017000	0	0	0	63969000	23178000	40790000	107310000	61746000	45562000	34624	2285;3886	32765	213125;213126;213127	287512	287512	2397		0	
LTSALFNAASGWLGWK	1	Unmodified	1720.8937	0.89369102	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			2						10	4	2	3	3	96.214	89.071	2;3	1.5015E-75	51013	160513_QHF_FH_JSI10Kac_6	230.14	189.42			0.74034	0.84812	40.351	12	4	Median	0.8873	0.7441	47.967	4	2	Median	0.7247	0.86763	11.575	2	0	Median	0.67871	0.64726	46.102	3	2	Median	0.87494	0.89975	42.741	3	0	Median	1694000000	951970000	742030000	590650000	332240000	258410000	504300000	281030000	223260000	382200000	241170000	141030000	216850000	97530000	119320000	34625	4678	32766	213128;213129;213130;213131;213132;213133;213134;213135;213136;213137;213138;213139	287513;287514;287515;287516;287517;287518;287519;287520;287521;287522;287523;287524;287525;287526;287527	287526			15	
LTSAVSSLPELLEK	1	Unmodified	1485.829	0.82902508	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.6	5.2		4						1		2		2	1	85.458	82.819	2	0.00014055	73363	160511_QHF_FH_JSI12i_2	98.156	74.306			0.78462	0.80543	24.716	5	3	Median	1.0187	0.87619	33.122	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6883	0.67501	25.475	2	1	Median	0.70272	0.80543	NaN	1	0	Median	183620000	102900000	80727000	68330000	36850000	31480000	0	0	0	60720000	33607000	27113000	54574000	32440000	22134000	34626	3785	32767	213140;213141;213142;213143;213144	287528;287529;287530;287531	287528			4	
LTSDDVK	1	Unmodified	776.3916	0.39159855	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.28	1	4			1	2				1	3	2	2	11.856	8.8795	2	0.021566	5518	160513_QHF_FH_JSI12Kac_3	68.915	0			0.90168	0.99403	12.064	8	0	Median	1.2052	1.0521	NaN	1	0	Median	0.78516	0.94899	8.7933	3	0	Plateau	0.93976	0.93401	9.3348	2	0	Median	0.82712	0.91126	23.12	2	0	Median	5161200000	2497000000	2664200000	57293000	28965000	28328000	191700000	105220000	86483000	4683700000	2240100000	2443600000	228540000	122720000	105820000	34627	1995	32768	213145;213146;213147;213148;213149;213150;213151;213152	287532;287533;287534	287534			3	
LTSDSTVYDYAGK	1	Unmodified	1418.6565	0.65654002	173	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	43.875	39.547	2	0.00041432	35522	160511_QHF_FH_JSI11i_1	93.839	72.375			1.4236	1.6085	35.242	7	5	Linear	1.2469	1.0209	NaN	1	1	Median	0.93037	1.101	75.501	2	2	Median	1.2607	1.2488	30.843	2	1	Median	1.1012	1.1857	21.605	2	1	Median	829920000	333390000	496530000	105820000	52020000	53795000	258180000	99913000	158270000	248560000	91465000	157100000	217360000	89990000	127370000	34628	173	32769	213153;213154;213155;213156;213157;213158;213159	287535;287536;287537;287538;287539;287540	287535			6	
LTSESTNQR	0	Unmodified	1034.4993	0.49925152	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.7281	5.4042	2	0.047422	3454	160511_QHF_FH_JSI12i_1	36.381	25.16			0.91092	0.8955	2.5176	4	0	Median	1.1099	0.91324	NaN	1	0	Median	0.76507	0.87811	NaN	1	0	Median	0.91362	0.87546	NaN	1	0	Median	0.90823	0.9181	NaN	1	0	Median	510060000	267250000	242810000	111440000	50547000	60892000	117010000	68484000	48522000	150750000	82014000	68740000	130860000	66206000	64659000	34629	3296	32770	213160;213161;213162;213163	287541	287541			1	
LTSFIGAIAIGDLVK	1	Unmodified	1516.8865	0.88648038	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.14		8	11						8	7	7	7	6	99.874	97.318	2;3	2.4154E-74	51103	160513_QHF_FH_JSI10Kac_6	224.24	172.97			0.95983	0.93768	17.301	27	6	Median	1.1577	0.96015	16.522	7	2	Median	0.73548	0.83712	15.707	7	2	Median	0.95983	0.98629	11.598	7	2	Median	1.001	1.0415	17.87	6	0	Median	29172000000	14275000000	14897000000	5195100000	2263400000	2931700000	5826200000	3257300000	2569000000	7225100000	3408600000	3816500000	10925000000	5346000000	5579400000	34630	2090	32771	213164;213165;213166;213167;213168;213169;213170;213171;213172;213173;213174;213175;213176;213177;213178;213179;213180;213181;213182;213183;213184;213185;213186;213187;213188;213189;213190	287542;287543;287544;287545;287546;287547;287548;287549;287550;287551;287552;287553;287554;287555;287556;287557;287558;287559;287560;287561;287562;287563;287564;287565;287566;287567;287568;287569;287570;287571;287572;287573;287574;287575;287576;287577;287578;287579;287580;287581;287582;287583;287584;287585;287586	287586			45	
LTSFITVFK	1	Unmodified	1054.6063	0.60628277	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.64		3	3					1	4	3	2	3	3	81.462	77.146	2	0.0011543	39585	160513_QHF_FH_JSI9Kac_6	87.308	26.871			0.85507	0.89875	25.682	11	1	Median	1.0856	0.92235	36.478	3	1	Median	0.6441	0.76752	36.03	2	0	Median	1.1527	1.0683	16.57	3	0	Plateau	0.81669	0.81992	14.193	3	0	Median	1252000000	591270000	660770000	341160000	145260000	195900000	239720000	109000000	130720000	398940000	216380000	182560000	272220000	120630000	151590000	34631	2454	32772	213191;213192;213193;213194;213195;213196;213197;213198;213199;213200;213201	287587;287588;287589;287590;287591;287592;287593;287594;287595;287596;287597;287598;287599	287594			13	
LTSGVLMFAK	1	Unmodified	1065.5893	0.5892525	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			73.164	65.139	2	0.0099274	35904	160513_QHF_FH_JSI10Kac_6	55.898	38.801			0.86992	0.87076	25.702	2	0	Median	1.2065	1.0443	NaN	1	0	Median	0.62722	0.72605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98244000	50016000	48228000	46313000	17921000	28392000	51931000	32095000	19837000	0	0	0	0	0	0	34632	3477	32773	213202;213203	287600;287601	287601			2	
LTSIGSDEDEETETYQEK	1	Unmodified	2072.891	0.89096923	5314	Q9UHW9	SLC12A6	Solute carrier family 12 member 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	39.116	38.686	2	1.5335E-23	34912	160511_QHF_FH_JSI11i_1	136.99	119.62			2.0387	2.0834	70.221	3	2	Median	NaN	NaN	NaN	0	0	Median	0.59739	0.68429	NaN	1	1	Median	2.5805	2.5059	NaN	1	1	Median	2.0387	2.0834	NaN	1	0	Median	56717000	26772000	29946000	0	0	0	17474000	14666000	2807400	13348000	3253700	10094000	25896000	8851700	17044000	34633	5314	32774	213204;213205;213206;213207	287602;287603;287604;287605	287603			4	
LTSLAAALDENK	1	Unmodified	1244.6612	0.66123147	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	56.643	55.974	2	2.9283E-05	49363	160511_QHF_FH_JSI10i_2	130.01	102.26			1.0934	1.0893	19.05	6	0	Median	1.1841	1.0077	NaN	1	0	Median	0.86698	1.0531	NaN	1	0	Median	1.243	1.2167	32.085	2	0	Median	1.2016	1.27	16.923	2	0	Median	692000000	305610000	386390000	83038000	39175000	43862000	122020000	64623000	57402000	264460000	111980000	152480000	222480000	89835000	132640000	34634	655	32775	213208;213209;213210;213211;213212;213213	287606;287607;287608;287609;287610;287611;287612;287613;287614	287612			9	
LTSLDIPATYLTGDK	1	Unmodified	1606.8454	0.84540342	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		83.789	83.424	2	0.0079389	76027	160511_QHF_FH_JSI11i_1	59.57	42.544			0.28254	0.27256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28254	0.27256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12370000	9565000	2804800	0	0	0	0	0	0	12370000	9565000	2804800	0	0	0	34635	1817	32776	213214	287615	287615			1	
LTSLGVIGALVK	1	Unmodified	1169.7384	0.73835958	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	89.084	84.861	2	1.9001E-31	74138	160511_QHF_FH_JSI9i_3	190.88	142.09			0.96079	0.91475	24.663	7	0	Median	1.168	0.969	21.061	2	0	Median	0.81614	0.93152	NaN	1	0	Median	0.93415	0.89382	3.2731	2	0	Median	1.1136	1.17	48.814	2	0	Median	821510000	449760000	371750000	233670000	119420000	114250000	110460000	62163000	48297000	211380000	115320000	96054000	266000000	152850000	113150000	34636	3854	32777	213215;213216;213217;213218;213219;213220;213221	287616;287617;287618;287619;287620;287621;287622;287623;287624;287625;287626	287622			11	
LTSLLEETLNK	1	Unmodified	1259.6973	0.69728262	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.991	68.096	2	0.00016793	58554	160511_QHF_FH_JSI12i_2	92.538	79.95			3.0243	1.3896	82.479	4	4	Linear	0.58806	0.49425	NaN	1	1	Median	0.62564	0.77925	NaN	1	1	Median	2.5051	2.478	NaN	1	1	Median	2.3257	2.5144	NaN	1	1	Median	144490000	62330000	82159000	22608000	16121000	6487500	30202000	21519000	8683400	47732000	9749800	37982000	43946000	14940000	29006000	34637	5316	32778	213222;213223;213224;213225	287627;287628;287629;287630	287627			4	
LTSLNEEYTK	1	Unmodified	1196.5925	0.5924832	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	31.981	31.298	2	0.0070541	27393	160511_QHF_FH_JSI9i_1	61.593	43.154			0.95649	0.98159	21.103	7	1	Median	1.1682	0.98595	36.108	2	1	Median	0.88035	1.0429	8.575	2	0	Median	1.0291	1.0461	12.867	2	0	Median	0.69591	0.71793	NaN	1	0	Median	857510000	474450000	383060000	171810000	82216000	89593000	262100000	154630000	107480000	231380000	121620000	109750000	192220000	115980000	76241000	34638	1557	32779	213226;213227;213228;213229;213230;213231;213232	287631;287632;287633;287634;287635;287636;287637	287633			7	
LTSLNVK	1	Unmodified	773.4647	0.46470391	1281;724	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.55	2	3					1	3		1	2	3	3	28.805	24.316	2	0.017401	21111	160511_QHF_FH_JSI9i_2	62.717	18.025			0.90716	0.98446	61.319	9	1	Median	0.20579	0.17456	NaN	1	1	Median	0.68356	0.82666	7.2229	2	0	Median	0.99783	0.99171	19.865	3	0	Median	1.2309	1.3093	23.002	3	0	Plateau	4232600000	2362400000	1870200000	524370000	405050000	119320000	919610000	560440000	359160000	2309700000	1142700000	1167000000	478930000	254250000	224680000	34639	1281;724	32780	213233;213234;213235;213236;213237;213238;213239;213240;213241	287638;287639;287640;287641;287642;287643;287644;287645;287646;287647;287648	287642			11	
LTSLNVKYNNDK	2	Acetyl (K)	1449.7464	0.74635808	1281;724	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						2	2				2	2		53.556	43.651	2	3.0971E-15	24892	160513_QHF_FH_JSI11Kac_4	134.2	113.33			0.5078	0.54653	78.17	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79865	0.94988	NaN	1	0	Median	0.32287	0.31446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15083000	11167000	3916100	0	0	0	2763700	1533200	1230500	12320000	9634100	2685600	0	0	0	34640	1281;724	32781	213242;213243;213244;213245	287649;287650;287651;287652	287651	359		4	
LTSLQLQHLFMILASPR	0	Unmodified	1967.1026	0.10263794	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	96.543	88.023	2;3	1.1276E-128	49673	160513_QHF_FH_JSI11Kac_6	269.26	216.7			1.1106	1.0666	14.997	9	3	Median	1.368	1.1673	3.9396	2	0	Median	0.82447	0.9739	9.6332	2	0	Median	1.2777	1.2207	7.5223	3	2	Plateau	0.82779	0.87742	17.225	2	1	Median	11432000000	5354800000	6076700000	2008300000	808840000	1199500000	2147800000	1139000000	1008900000	6072900000	2691900000	3381000000	1202600000	715130000	487430000	34641	4136	32782	213246;213247;213248;213249;213250;213251;213252;213253;213254	287653;287654;287655;287656;287657;287658;287659;287660;287661;287662	287653			10	
LTSLQLQHLFMILASPR	0	Oxidation (M)	1983.0976	0.09755256	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	95.987	86.702	3	1.1987E-06	47189	160513_QHF_FH_JSI12Kac_6	98.882	83.358			0.93626	0.89208	17.064	3	0	Plateau	1.4034	1.2222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93626	0.89208	NaN	1	0	Median	0.87825	0.93161	NaN	1	0	Median	1151800000	540890000	610910000	346710000	132390000	214320000	0	0	0	449690000	233060000	216630000	355410000	175440000	179960000	34642	4136	32782	213255;213256;213257	287663;287664;287665	287665		2397	0	
LTSLVLVASGR	0	Unmodified	1114.671	0.67100829	4990	Q9NTJ4	MAN2C1	Alpha-mannosidase 2C1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			68.145	60.385	2	0.015632	33146	160513_QHF_FH_JSI10Kac_6	54.094	38.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34643	4990	32783	213258	287666	287666			1	
LTSLVPFVDAFQLER	0	Unmodified	1733.9352	0.93522148	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		101.92	101.92	2	1.0647E-16	91016	160511_QHF_FH_JSI11i_3	124.12	100.14			1.1776	1.1066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1776	1.1066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1000400000	512630000	487730000	0	0	0	0	0	0	1000400000	512630000	487730000	0	0	0	34644	2502	32784	213259;213260	287667;287668	287668			2	
LTSMHFYGWK	1	Oxidation (M)	1284.5961	0.59612879	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	2	2	4	3	48.538	40.856	2;3	1.8472E-08	21764	160513_QHF_FH_JSI9Kac_6	138.1	121.89			0.94481	0.94069	7.78	11	0	Median	1.1254	0.97643	1.8377	2	0	Median	0.77991	0.91252	2.0226	2	0	Median	0.95675	0.89153	10.293	4	0	Median	0.94481	1.002	3.6964	3	0	Median	1942600000	969770000	972800000	393800000	181870000	211930000	397200000	188100000	209090000	411180000	238360000	172820000	740390000	361430000	378960000	34645	1242	32785	213261;213262;213263;213264;213265;213266;213267;213268;213269;213270;213271	287669;287670;287671;287672;287673;287674;287675;287676;287677;287678;287679;287680;287681;287682;287683;287684;287685;287686;287687	287678		875	18	
LTSMHFYGWK	1	Unmodified	1268.6012	0.60121417	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.5		3	9						8	5	5	5	5	60.223	56.091	2;3	2.1216E-12	30982	160513_QHF_FH_JSI10Kac_6	157.68	137.89			1.0534	1.0317	37.856	20	3	Median	1.1641	0.97628	12.554	5	0	Median	0.79135	0.9247	16.379	5	0	Median	1.0831	1.0311	54.455	5	1	Median	1.0087	1.0533	57.868	5	2	Median	17515000000	8196600000	9318100000	3562900000	1513300000	2049700000	5136100000	2541400000	2594700000	4449100000	2159800000	2289400000	4366700000	1982200000	2384500000	34646	1242	32785	213272;213273;213274;213275;213276;213277;213278;213279;213280;213281;213282;213283;213284;213285;213286;213287;213288;213289;213290;213291	287688;287689;287690;287691;287692;287693;287694;287695;287696;287697;287698;287699;287700;287701;287702;287703;287704;287705;287706;287707;287708;287709;287710;287711;287712;287713;287714;287715;287716;287717;287718;287719;287720;287721;287722;287723;287724;287725;287726;287727;287728;287729;287730;287731;287732;287733;287734;287735;287736;287737;287738;287739;287740;287741;287742	287742			55	
LTSNPLASHDYILK	1	Unmodified	1570.8355	0.83550744	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	3	3	5	58.528	57.696	2;3	1.767E-05	50886	160511_QHF_FH_JSI10i_2	119.45	94.657			0.95254	1.0393	31.558	13	9	Median	1.2702	1.081	5.0141	2	2	Median	0.55427	0.67479	49.46	3	3	Median	1.1511	0.99896	8.2063	3	0	Plateau	0.92279	0.98533	20.396	5	4	Median	1929900000	947080000	982800000	317960000	128480000	189470000	313450000	155120000	158330000	737830000	372940000	364880000	560650000	290540000	270120000	34647	3953	32786	213292;213293;213294;213295;213296;213297;213298;213299;213300;213301;213302;213303;213304	287743;287744;287745;287746;287747;287748;287749;287750;287751;287752;287753;287754;287755;287756;287757;287758;287759	287755			17	
LTSQAFIETMFTSK	1	Unmodified	1602.7963	0.79634474	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	92.346	92.239	2;3	3.4241E-06	82247	160511_QHF_FH_JSI11i_3	133.71	110.34			1.1221	1.0537	47.459	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93459	0.89688	10.537	3	2	Median	2.0167	2.1187	27.443	2	1	Median	225620000	105920000	119710000	0	0	0	0	0	0	133660000	72424000	61235000	91966000	33493000	58473000	34648	4922	32787	213305;213306;213307;213308;213309	287760;287761;287762;287763;287764	287761			3	
LTSSLPDVEALR	0	Unmodified	1299.7034	0.70343063	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.598	64.967	2	0.028761	59227	160511_QHF_FH_JSI12i_1	47.977	27.075			1.2423	1.2708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2423	1.2708	NaN	1	1	Median	67358000	32782000	34577000	0	0	0	0	0	0	0	0	0	67358000	32782000	34577000	34649	2884	32788	213310	287765	287765			1	
LTSSLTTK	1	Unmodified	849.48075	0.48074791	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.86	5.49	3	2				1	1				2	4	1	19.257	16.807	2	0.01765	10784	160513_QHF_FH_JSI11Kac_4	58.815	47.746			1.231	1.2198	70.217	7	4	Median	NaN	NaN	NaN	0	0	Median	0.69183	0.82901	122.82	2	2	Median	1.3825	1.3727	63.025	4	2	Median	1.1158	1.1905	NaN	1	0	Median	1274600000	696840000	577750000	0	0	0	415580000	260470000	155110000	572790000	288140000	284660000	286220000	148230000	137990000	34650	1216	32789	213311;213312;213313;213314;213315;213316;213317	287766;287767;287768;287769;287770;287771	287769			6	
LTSSLTTKGASSFK	2	Acetyl (K)	1468.7773	0.77732386	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		59.377	48.363	2	0.0088927	27578	160513_QHF_FH_JSI11Kac_4	57.836	42.634			0.48878	0.48678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48878	0.48678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8458800	6220600	2238200	0	0	0	0	0	0	8458800	6220600	2238200	0	0	0	34651	1216	32790	213318	287772	287772	1092		1	
LTSSNEINK	1	Unmodified	1004.5138	0.51383895	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.746	11.428	2	0.018902	9356	160511_QHF_FH_JSI12i_1	42.599	16.862			0.88448	0.97192	5.1586	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79497	0.9371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98407	1.008	NaN	1	0	Median	100980000	56456000	44526000	0	0	0	46337000	22791000	23546000	0	0	0	54644000	33665000	20980000	34652	5459	32791	213319;213320	287773;287774	287773			2	
LTSTATK	1	Unmodified	720.40177	0.4017693	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.429	5.0873	2	0.056861	3094	160511_QHF_FH_JSI12i_1	46.426	29.499			1.2165	1.2555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.2555	NaN	1	1	Median	171010000	87897000	83113000	0	0	0	0	0	0	0	0	0	171010000	87897000	83113000	34653	1035	32792	213321	287775	287775			1	
LTSTVMLWLQTNK	1	Unmodified	1533.8225	0.82249991	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	4	4	4	5	86.3	81.874	2;3	1.5094E-33	42030	160513_QHF_FH_JSI11Kac_6	202.16	152.66			1.11	0.96963	24.152	16	4	Median	1.1363	0.93877	14.738	4	0	Median	0.77681	0.9031	3.2623	4	0	Median	1.1792	1.5051	38.15	4	2	Linear	1.1789	1.2435	30.56	4	2	Median	2354700000	1128500000	1226300000	437390000	188420000	248970000	1030400000	566070000	464380000	596080000	240620000	355470000	290820000	133360000	157460000	34654	1607	32793	213322;213323;213324;213325;213326;213327;213328;213329;213330;213331;213332;213333;213334;213335;213336;213337;213338	287776;287777;287778;287779;287780;287781;287782;287783;287784;287785;287786;287787;287788;287789;287790;287791;287792;287793;287794;287795;287796;287797;287798;287799;287800;287801;287802;287803;287804;287805;287806;287807;287808;287809;287810	287786			35	
LTTASQTNIK	1	Unmodified	1075.5873	0.58733824	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.03	16.572	2	0.0045855	14155	160511_QHF_FH_JSI12i_1	65.305	19.587			0.37995	0.39887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37995	0.39887	NaN	1	1	Median	45683000	35686000	9997100	0	0	0	0	0	0	0	0	0	45683000	35686000	9997100	34655	5429	32794	213339;213340	287811;287812	287811			2	
LTTASQTNIKK	2	Unmodified	1203.6823	0.68230126	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	12.083	11.73	2;3	0.0030717	9089	160511_QHF_FH_JSI9i_3	44.614	25.869			1.236	1.0241	NaN	1	0	Median	1.236	1.0241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46702000	27281000	19421000	35345000	15925000	19421000	0	0	0	0	0	0	11356000	11356000	0	34656	5429	32795	213341;213342	287813;287814	287813			2	
LTTDFGNAEK	1	Unmodified	1094.5244	0.52440364	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.93	5	4				3	3			3	5	4	3	33.693	28.568	2	2.5173E-07	27232	160511_QHF_FH_JSI10i_1	114.5	77.476			1.0489	1.16	35.85	14	5	Median	1.0352	0.85355	27.697	3	1	Median	1.1473	1.3549	40.042	5	2	Median	1.2731	1.3003	33.01	3	1	Median	1.0251	1.0901	23.422	3	1	Plateau	3592200000	1648300000	1943900000	858610000	429520000	429080000	1038600000	518560000	520030000	658470000	245050000	413420000	1036500000	455120000	581380000	34657	793	32796	213343;213344;213345;213346;213347;213348;213349;213350;213351;213352;213353;213354;213355;213356;213357	287815;287816;287817;287818;287819;287820;287821;287822;287823;287824;287825;287826;287827;287828;287829;287830;287831;287832;287833	287822			19	
LTTDFNVIVEALSK	1	Unmodified	1548.8399	0.83992412	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	2	2	1	3	99.116	96.041	2	1.089E-29	89399	160511_QHF_FH_JSI11i_2	185.59	148.4			0.85477	1.003	36.98	8	0	Median	0.78559	0.67334	61.818	2	0	Median	0.7266	0.8679	22.603	2	0	Median	1.2934	1.354	NaN	1	0	Median	0.88362	0.98799	30.573	3	0	Median	2301400000	1104100000	1197400000	372320000	165480000	206840000	599370000	327100000	272270000	731820000	310310000	421510000	597940000	301200000	296740000	34658	840	32797	213358;213359;213360;213361;213362;213363;213364;213365	287834;287835;287836;287837;287838;287839;287840;287841;287842	287836			9	
LTTEATQTPVSNK	1	Unmodified	1388.7147	0.7147236	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	23.778	23.328	2	4.4551E-05	20305	160511_QHF_FH_JSI11i_1	116.74	71.576			1.0386	1.1605	26.313	7	6	Median	1.4181	1.1605	NaN	1	0	Median	0.86317	1.014	22.95	2	2	Median	1.3822	1.3084	43.11	2	2	Median	1.056	1.0958	32.882	2	2	Median	576600000	246370000	330230000	91720000	27157000	64563000	109860000	52890000	56966000	148980000	48369000	100620000	226040000	117950000	108090000	34659	4525	32798	213366;213367;213368;213369;213370;213371;213372	287843;287844;287845;287846;287847;287848;287849;287850	287844			8	
LTTEEVIK	1	Unmodified	931.52261	0.52261272	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		33.74	33.145	2	0.0033453	29810	160511_QHF_FH_JSI11i_1	73.248	37.063			0.92603	0.93889	7.2478	5	0	Median	1.0728	0.89738	NaN	1	0	Median	0.8282	0.9854	8.1458	2	0	Median	1.002	0.99438	8.1206	2	0	Median	NaN	NaN	NaN	0	0	Median	760120000	429690000	330430000	69443000	33049000	36394000	358270000	193860000	164400000	332410000	202780000	129630000	0	0	0	34660	279	32799	213373;213374;213375;213376;213377;213378	287851;287852	287851			2	
LTTFYGAFGPEK	1	Unmodified	1329.6605	0.66050319	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	1	2	2	68.052	65.842	2	0.00026626	58602	160511_QHF_FH_JSI10i_2	91.937	72.151			1.0501	1.1581	32.29	6	3	Median	1.7256	1.5184	NaN	1	1	Median	0.94698	1.1642	NaN	1	1	Median	0.89565	0.87892	38.256	2	0	Median	1.0187	1.0931	41.012	2	1	Median	218700000	100710000	117990000	32448000	12578000	19870000	45990000	21503000	24487000	80447000	39068000	41379000	59813000	27563000	32250000	34661	1716	32800	213379;213380;213381;213382;213383;213384	287853;287854;287855;287856;287857;287858	287857			6	
LTTHKEELYPK	2	Acetyl (K)	1399.7347	0.73473076	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		45.183	34.806	3	0.026621	19737	160513_QHF_FH_JSI11Kac_5	41.401	32.294			0.19961	0.19151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19961	0.19151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3478800	3114600	364180	0	0	0	0	0	0	3478800	3114600	364180	0	0	0	34662	4443	32801	213385	287859	287859	3161		1	
LTTLIELLLPK	1	Unmodified	1252.8006	0.80062548	1776	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.45	102.46	2	0.0091318	89227	160511_QHF_FH_JSI12i_3	58.699	50.774			1.0998	1.0418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0998	1.0418	NaN	1	1	Median	31308000	18062000	13246000	0	0	0	0	0	0	0	0	0	31308000	18062000	13246000	34663	1776	32802	213386	287860	287860			1	
LTTLPSDFCGLTHLVK	1	Unmodified	1800.9444	0.94440596	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	1	3	87.742	87.03	2;3	1.6604E-07	75476	160511_QHF_FH_JSI12i_3	127.75	118.1			1.1532	1.0449	23.926	7	0	Median	1.2378	1.0273	2.4136	2	0	Median	0.89997	1.0569	6.9393	2	0	Median	0.82802	0.8359	NaN	1	0	Median	1.4091	1.4995	24.605	2	0	Median	1102300000	533860000	568430000	164230000	68188000	96045000	326850000	172820000	154030000	304510000	167290000	137220000	306700000	125560000	181140000	34664	3968	32803	213387;213388;213389;213390;213391;213392;213393;213394	287861;287862;287863;287864;287865;287866;287867;287868;287869;287870;287871;287872;287873;287874;287875;287876;287877;287878	287878			18	
LTTPGTHTFTLVVSQYEK	1	Unmodified	2021.047	0.046956778	5749	Q9Y6W3	CAPN7	Calpain-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			74.632	70.713	3	0.00017692	37822	160513_QHF_FH_JSI10Kac_6	86.573	67.741			0.8595	0.83924	9.9341	2	1	Median	0.95448	0.78231	NaN	1	0	Median	0.77397	0.90031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68193000	31293000	36899000	17719000	8733300	8986000	50473000	22560000	27913000	0	0	0	0	0	0	34665	5749	32804	213395;213396	287879;287880	287880			2	
LTTPPVNTR	0	Unmodified	997.55564	0.55564418	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	25.847	25.22	2	0.00087461	21782	160511_QHF_FH_JSI9i_2	72.485	46.591			0.8067	0.89889	14.842	5	1	Median	1.3539	1.1534	NaN	1	0	Median	0.75347	0.89889	NaN	1	0	Median	0.82578	0.8205	10.195	2	1	Median	0.8067	0.9074	NaN	1	0	Median	737610000	397770000	339830000	138480000	69898000	68578000	187360000	86189000	101170000	296360000	171690000	124670000	115420000	69997000	45424000	34666	3860	32805	213397;213398;213399;213400;213401	287881;287882;287883;287884;287885;287886	287885			6	
LTTPTYGDLNHLVSATMSGVTTCLR	0	Oxidation (M)	2723.3259	0.32585053	2075;872;2477;811	P07437;P68371;Q13885;Q9BVA1;P04350	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	91.27	90.997	3	1.4268E-28	80662	160511_QHF_FH_JSI11i_3	156.47	148.75			1.0992	1.2225	18.433	8	0	Median	1.3009	1.1206	NaN	1	0	Median	0.99295	1.2225	2.1212	2	0	Median	1.0801	1.0049	0.63998	2	0	Median	1.5741	1.6224	13.328	3	0	Plateau	1822900000	798280000	1024600000	49084000	21999000	27085000	250570000	125470000	125100000	668010000	324390000	343620000	855250000	326420000	528830000	34667	872;2075;2477;811	32806	213402;213403;213404;213405;213406;213407;213408;213409;213410	287887;287888;287889;287890;287891;287892;287893;287894;287895;287896;287897;287898;287899	287887		328	13	
LTTPTYGDLNHLVSATMSGVTTCLR	0	Unmodified	2707.3309	0.33093591	2075;872;2477;811	P07437;P68371;Q13885;Q9BVA1;P04350	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.58	6.03	1	6	2						3	2	3	4	3	99.303	96.886	3;4	2.2452E-94	83784	160511_QHF_FH_JSI10i_3	236.02	223.82			1.1339	1.2051	19.159	12	2	Median	1.4982	1.2874	3.6569	2	0	Median	0.91299	1.0377	19.222	3	0	Median	1.174	1.1037	18.297	4	2	Median	1.149	1.2825	15.541	3	0	Median	16181000000	7207100000	8974300000	4459100000	1804900000	2654100000	1764300000	994180000	770080000	3284300000	1412000000	1872300000	6673700000	2996000000	3677700000	34668	872;2075;2477;811	32806	213411;213412;213413;213414;213415;213416;213417;213418;213419;213420;213421;213422	287900;287901;287902;287903;287904;287905;287906	287901			6	
LTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK	1	Unmodified	3947.0033	0.0033411841	2075;872;2477;811	P07437;P68371;Q13885;Q9BVA1;P04350	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain	no	no	0	0	0	2		By MS/MS			16	0									1		1			94.544	88.824	5	9.9073E-42	51095	160513_QHF_FH_JSI10Kac_6	143.75	127.83			2.0142	2.3947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0142	2.3947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160890000	56106000	104780000	0	0	0	160890000	56106000	104780000	0	0	0	0	0	0	34669	872;2075;2477;811	32807	213423	287907	287907			1	
LTTPTYGDLNHLVSATMSGVTTSLR	0	Oxidation (M)	2650.3272	0.32723074	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	92.12	92.098	3	2.9594E-05	79802	160511_QHF_FH_JSI12i_3	53.865	46.332			0.84881	0.84247	15.613	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78655	0.75441	NaN	1	1	Median	0.916	0.94081	NaN	1	0	Median	92515000	43949000	48566000	0	0	0	0	0	0	42223000	15540000	26684000	50292000	28410000	21882000	34670	4440	32808	213424;213425	287908;287909;287910	287910		2471	3	
LTTPTYGDLNHLVSATMSGVTTSLR	0	Unmodified	2634.3323	0.33231612	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	2	1	98.262	94.587	3	4.4127E-52	88083	160511_QHF_FH_JSI12i_3	203.25	161.34			1.0471	0.99408	24.359	5	1	Median	1.1919	1.0033	NaN	1	1	Median	1.3717	1.5882	NaN	1	0	Median	0.95558	0.91185	12.212	2	0	Median	0.95272	0.95317	NaN	1	0	Median	3141200000	1510100000	1631100000	58058000	13772000	44286000	349970000	154900000	195070000	1310100000	630910000	679190000	1423000000	710480000	712540000	34671	4440	32808	213426;213427;213428;213429;213430	287911;287912;287913	287913			3	
LTTSEEK	1	Unmodified	806.40216	0.40216323	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.5492	6.2148	2	0.037612	4019	160511_QHF_FH_JSI11i_1	48.561	27.015			0.8839	0.92211	12.08	4	0	Median	1.1614	0.92731	NaN	1	0	Median	0.91205	1.08	NaN	1	0	Median	0.82528	0.80387	NaN	1	0	Median	0.85663	0.91694	NaN	1	0	Median	1180400000	593690000	586760000	248780000	103770000	145010000	299360000	151920000	147440000	261810000	139380000	122430000	370490000	198620000	171870000	34672	3290	32809	213431;213432;213433;213434	287914;287915;287916	287914			3	
LTTTGQVTSPVK	1	Unmodified	1230.682	0.68196691	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.871	31.299	2	0.00022025	28206	160511_QHF_FH_JSI12i_1	79.23	59.959			0.87648	0.90668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87648	0.90668	NaN	1	0	Median	52579000	29637000	22942000	0	0	0	0	0	0	0	0	0	52579000	29637000	22942000	34673	1694	32810	213435	287917	287917			1	
LTTVCPTVKPQTQGLAK	2	Unmodified	1841.0081	0.0080688509	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	42.823	42.238	3	0.00083542	35974	160511_QHF_FH_JSI12i_3	57.52	30.791			0.84632	0.82266	15.563	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73541	0.82266	NaN	1	1	Median	0.74967	0.70554	NaN	1	1	Median	0.95543	0.96316	NaN	1	1	Median	161150000	88771000	72384000	0	0	0	21253000	12610000	8643100	59370000	32428000	26942000	80531000	43733000	36799000	34674	884	32811	213436;213437;213438;213439	287918;287919;287920;287921	287921			4	
LTVADALEPVQFEDGEK	1	Unmodified	1859.9153	0.9152739	1371	P31321	PRKAR1B	cAMP-dependent protein kinase type I-beta regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	85.623	85.129	2;3	5.6937E-17	77547	160511_QHF_FH_JSI11i_1	127.37	83.991			0.83377	0.83296	1.4753	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83377	0.83296	1.4753	2	1	Median	29927000	17926000	12001000	0	0	0	0	0	0	0	0	0	29927000	17926000	12001000	34675	1371	32812	213440;213441;213442;213443;213444;213445	287922;287923;287924;287925;287926;287927	287922			6	
LTVADALEPVQFEDGQK	1	Unmodified	1858.9313	0.93125832	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	84.298	83.837	2;3	1.6668E-40	76341	160511_QHF_FH_JSI12i_1	255.16	213.62			0.96801	1.001	5.2633	8	1	Median	1.1859	0.97269	5.0859	2	1	Median	0.88854	1.0363	3.3261	2	0	Median	1.0057	0.99264	3.0081	2	0	Median	0.90764	0.94316	7.3797	2	0	Median	1116900000	568980000	547890000	247560000	122590000	124970000	254890000	140440000	114450000	319660000	165160000	154510000	294770000	140800000	153970000	34676	977	32813	213446;213447;213448;213449;213450;213451;213452;213453	287928;287929;287930;287931;287932;287933;287934;287935;287936;287937;287938;287939;287940;287941;287942;287943;287944;287945;287946;287947	287933			20	
LTVADIR	0	Unmodified	786.45995	0.45995289	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	39.412	38.747	2	0.0075894	33144	160511_QHF_FH_JSI12i_2	86.866	17.434			0.71606	0.78266	13.162	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7186	0.85715	NaN	1	0	Median	0.78083	0.76568	NaN	1	0	Median	0.65152	0.71028	16.825	2	0	Median	356860000	202150000	154700000	0	0	0	67764000	41144000	26620000	91079000	51076000	40003000	198010000	109930000	88080000	34677	1000	32814	213454;213455;213456;213457	287948;287949;287950;287951	287949			4	
LTVADIRK	1	Unmodified	914.55492	0.5549159	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.85		3	10					1	4	5	5	5	3	33.106	30.008	2;3	0.00018683	26049	160511_QHF_FH_JSI11i_3	88.37	21.2			0.91472	0.97105	66.857	18	3	Median	1.3343	1.0572	53.56	5	1	Median	0.71905	0.88138	98.814	5	1	Median	1.0485	1.0266	72.822	5	1	Median	0.76854	0.76817	9.3533	3	0	Plateau	7373700000	3790500000	3583200000	2165900000	1107200000	1058700000	1759000000	779650000	979340000	2300300000	1143500000	1156800000	1148500000	760110000	388400000	34678	1000	32815	213458;213459;213460;213461;213462;213463;213464;213465;213466;213467;213468;213469;213470;213471;213472;213473;213474;213475	287952;287953;287954;287955;287956;287957;287958;287959;287960;287961;287962;287963;287964;287965;287966;287967;287968;287969;287970;287971;287972	287953			21	
LTVAENEAETK	1	Unmodified	1203.5983	0.59829686	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.41	4	4	1			2				2	3	3	3	24.81	22.746	2	2.5903E-05	19504	160511_QHF_FH_JSI9i_1	99.985	63.213			1.0116	0.9611	27.953	10	1	Median	1.1586	0.9611	18.301	2	0	Median	0.97319	1.1523	33.081	3	0	Median	0.76559	0.73149	39.115	3	0	Plateau	0.73277	0.79338	3.0642	2	1	Median	4314700000	2402900000	1911800000	950010000	513360000	436650000	941540000	480420000	461110000	1084300000	639220000	445080000	1338900000	769860000	569000000	34679	878	32816	213476;213477;213478;213479;213480;213481;213482;213483;213484;213485;213486	287973;287974;287975;287976;287977;287978;287979;287980;287981;287982;287983;287984;287985;287986	287979			14	
LTVASFLSDR	0	Unmodified	1107.5924	0.59242362	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.991	72.991	2	0.011656	65130	160511_QHF_FH_JSI11i_3	56.013	32.22			0.87608	0.81305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87608	0.81305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85856000	43545000	42311000	0	0	0	0	0	0	85856000	43545000	42311000	0	0	0	34680	3003	32817	213487	287987	287987			1	
LTVDSAIAR	0	Unmodified	944.5291	0.52909508	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.94	3	4	1				2			2	3	3	2	40.051	37.395	2	0.00051521	21902	160513_QHF_FH_JSI11Kac_4	94.114	49.393			0.94762	0.97893	14.711	10	0	Median	1.1909	0.9989	7.8324	2	0	Median	0.81082	0.97638	1.4052	3	0	Median	1.0588	1.0704	14.59	3	0	Median	0.807	0.83837	23.796	2	0	Median	1466400000	716660000	749720000	261150000	119850000	141300000	423340000	219650000	203690000	522340000	240790000	281550000	259550000	136370000	123180000	34681	1085	32818	213488;213489;213490;213491;213492;213493;213494;213495;213496;213497	287988;287989;287990;287991;287992;287993;287994;287995;287996;287997	287992			10	
LTVEDLEK	1	Unmodified	945.50188	0.50187728	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	4.03	6	2					1			3	2	2	2	50.065	48.176	1;2	0.0035931	43076	160511_QHF_FH_JSI9i_1	71.379	21.253			0.98466	1.0473	30.558	9	4	Median	1.2593	1.0278	24.642	3	1	Median	0.92187	1.1077	4.5348	2	0	Median	1.1705	1.14	77.103	2	2	Median	0.9194	0.98956	8.0167	2	1	Median	4165300000	1934800000	2230500000	835000000	363290000	471710000	906360000	464330000	442030000	1460100000	703190000	756930000	963850000	404020000	559830000	34682	2698	32819	213498;213499;213500;213501;213502;213503;213504;213505;213506	287998;287999;288000;288001;288002;288003;288004;288005;288006;288007;288008;288009	288005			12	
LTVEDPVTVEYITR	0	Unmodified	1633.8563	0.85630246	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.65	0.681	8	7	2							4	5	4	4	77.014	76.371	2;3	3.2317E-21	67948	160511_QHF_FH_JSI9i_1	199.43	145.75			1.0371	0.99898	13.981	17	3	Median	1.1523	0.9708	26.573	4	0	Median	0.84324	0.98634	9.1388	5	1	Median	1.0168	1.0835	6.627	4	2	Linear	0.92816	0.95816	11.174	4	0	Median	2856600000	1454000000	1402600000	481350000	217670000	263680000	929680000	510370000	419320000	657330000	310700000	346630000	788250000	415280000	372960000	34683	209	32820	213507;213508;213509;213510;213511;213512;213513;213514;213515;213516;213517;213518;213519;213520;213521;213522;213523	288010;288011;288012;288013;288014;288015;288016;288017;288018;288019;288020;288021;288022;288023;288024;288025;288026;288027;288028;288029;288030;288031;288032;288033;288034;288035	288024			25	
LTVENSPK	1	Unmodified	886.476	0.47599688	343	O43583	DENR	Density-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	15.575	15.191	2	0.0046723	12814	160511_QHF_FH_JSI10i_1	67.981	16.194			0.86066	0.86035	19.374	7	0	Median	1.0594	0.86035	NaN	1	0	Median	0.74884	0.88769	14.976	2	0	Median	1.0496	1.0257	27.069	2	0	Median	0.87851	0.91212	31.496	2	0	Median	1166800000	534830000	631930000	226530000	78668000	147870000	337460000	162990000	174470000	314130000	135150000	178980000	288640000	158020000	130610000	34684	343	32821	213524;213525;213526;213527;213528;213529;213530	288036;288037;288038;288039;288040	288038			5	
LTVGNWSLTCLK	1	Unmodified	1390.7279	0.72787125	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	83.678	83.551	2	0.00022223	72502	160511_QHF_FH_JSI12i_3	94.616	64.362			0.66622	0.67271	25.23	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51663	0.47539	NaN	1	1	Median	0.72099	0.72277	10.15	2	2	Median	89180000	50143000	39037000	0	0	0	0	0	0	20677000	12019000	8657400	68503000	38124000	30379000	34685	5409	32822	213531;213532;213533	288041;288042;288043	288042			3	
LTVIDTPGFGDHINNENCWQPIMK	1	Unmodified	2798.3156	0.31562019	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	88.474	88.261	3	1.6608E-13	78803	160511_QHF_FH_JSI11i_3	110.67	98.232			1.1337	1.1327	19.051	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7755	0.94942	NaN	1	0	Median	1.014	0.96431	NaN	1	0	Median	1.1973	1.3305	NaN	1	0	Median	153590000	71365000	82226000	0	0	0	21265000	10238000	11027000	61065000	26807000	34257000	71262000	34320000	36942000	34686	5298	32823	213534;213535;213536	288044;288045;288046;288047;288048;288049	288045			6	
LTVLPPELGNLDLTGQK	1	Unmodified	1807.0091	0.0091147084	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								4	3	3	2	100.7	100.58	2;3	5.4492E-07	91059	160511_QHF_FH_JSI10i_1	90.731	65.877			1.133	1.0754	28.652	11	5	Median	1.342	1.0979	12.838	4	3	Median	0.7704	0.93153	8.4556	2	0	Median	1.0298	1.0123	44.551	3	1	Median	1.2917	1.3646	33.681	2	1	Median	282030000	135500000	146530000	77731000	34749000	42982000	48018000	27073000	20945000	85704000	41806000	43899000	70578000	31871000	38706000	34687	2668	32824	213537;213538;213539;213540;213541;213542;213543;213544;213545;213546;213547;213548	288050;288051;288052;288053;288054;288055;288056;288057;288058;288059;288060;288061;288062;288063;288064	288056			15	
LTVLQMTHNK	1	Unmodified	1183.6383	0.63832796	4016	Q96CV9	OPTN	Optineurin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	37.397	36.366	3	0.001178	29705	160511_QHF_FH_JSI9i_3	44.564	39.465			0.69533	0.60015	17.385	3	2	Median	0.69533	0.56308	NaN	1	0	Median	0.53357	0.60015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75922	0.78158	NaN	1	1	Median	139470000	72807000	66666000	43530000	22400000	21130000	31132000	19244000	11888000	0	0	0	64811000	31162000	33649000	34688	4016	32825	213549;213550;213551	288065;288066;288067	288066			3	
LTVLREDQLPSGFPNIDMGPQLK	1	Unmodified	2567.3418	0.34175859	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	1	2	96.175	96.052	3	5.1398E-06	85671	160511_QHF_FH_JSI11i_3	65.207	51.192			0.95453	0.91374	21.159	6	4	Median	1.0065	0.87672	11.865	2	2	Median	1.1649	1.3511	NaN	1	0	Median	0.92855	0.87568	NaN	1	0	Median	0.85073	0.8719	22.826	2	2	Median	187060000	107020000	80040000	26634000	12393000	14241000	10698000	5873800	4823900	75599000	44420000	31179000	74133000	44336000	29797000	34689	2390	32826	213552;213553;213554;213555;213556;213557	288068;288069;288070;288071;288072;288073;288074	288069			7	
LTVLSEER	0	Unmodified	945.51311	0.51311067	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.875	31.486	2	0.046323	26486	160511_QHF_FH_JSI11i_2	38.086	13.931			0.85105	0.87412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85105	0.87412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	495800000	262450000	233350000	0	0	0	0	0	0	495800000	262450000	233350000	0	0	0	34690	2470	32827	213558	288075	288075			1	
LTVMSLQESGLK	1	Unmodified	1304.701	0.70098779	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		4						2		1	2	2	1	68.426	64.29	2	0.00069113	56796	160511_QHF_FH_JSI9i_2	68.536	47.072			0.87279	0.95655	15.42	6	0	Median	1.19	1.0367	NaN	1	0	Median	0.76208	0.90371	18.325	2	0	Median	0.83847	0.8337	9.1522	2	0	Median	1.0214	1.1352	NaN	1	0	Median	311830000	169640000	142190000	56892000	30892000	26000000	67548000	38737000	28811000	113670000	63668000	50006000	73714000	36341000	37374000	34691	512	32828	213559;213560;213561;213562;213563;213564	288076;288077;288078	288077			2	
LTVMYSQINGASR	0	Unmodified	1438.7238	0.7238485	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	5.77		1	4					7	5	2	6	4	5	58.001	50.634	2;3	9.2446E-25	27839	160513_QHF_FH_JSI10Kac_6	163.78	111.79			0.9556	0.98543	31.984	17	10	Median	1.1967	1.0237	5.3843	2	2	Median	0.97496	1.1067	33.008	6	2	Median	0.92482	0.87875	13.536	4	2	Median	1.1363	1.226	41.959	5	4	Median	594650000	291210000	303430000	73651000	35142000	38509000	241180000	113780000	127400000	122560000	66575000	55989000	157250000	75715000	81533000	34692	2525	32829	213565;213566;213567;213568;213569;213570;213571;213572;213573;213574;213575;213576;213577;213578;213579;213580;213581	288079;288080;288081;288082;288083;288084;288085;288086;288087;288088;288089;288090;288091;288092;288093;288094;288095;288096;288097;288098;288099	288099			20	
LTVMYSQINGASR	0	Oxidation (M)	1454.7188	0.71876312	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.687							1	3	2	1	2	2	1	53.367	43.053	2	1.0448E-05	23065	160513_QHF_FH_JSI9Kac_5	101.35	79.263			0.93157	1.0482	12.451	6	1	Median	1.2965	1.0966	NaN	1	0	Median	0.89464	1.0482	5.4392	2	0	Median	0.90311	0.88089	6.7421	2	0	Median	1.0548	1.1765	NaN	1	1	Median	54764000	27575000	27189000	16887000	8268600	8617900	16719000	8563900	8155400	19524000	10004000	9520100	1634000	738190	895780	34693	2525	32829	213582;213583;213584;213585;213586;213587	288100;288101;288102;288103;288104;288105;288106	288100		1997	7	
LTVNDFVR	0	Unmodified	962.51853	0.5185304	5345;562	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	58.144	57.196	2	0.00051218	50339	160511_QHF_FH_JSI9i_2	105.81	49.798			0.94775	0.94007	8.0787	6	1	Median	1.0866	0.92189	NaN	1	0	Median	0.84761	1.0084	15.778	2	1	Median	0.97912	0.96072	1.0605	2	0	Median	0.82749	0.9268	NaN	1	0	Median	1027300000	555290000	472000000	164800000	75602000	89198000	180250000	105460000	74792000	329190000	185180000	144010000	353050000	189050000	164000000	34694	5345;562	32830	213588;213589;213590;213591;213592;213593	288107;288108;288109;288110;288111;288112;288113;288114	288112			8	
LTVNEAVK	1	Unmodified	872.49673	0.49673232	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	27.568	26.741	2	0.036037	22426	160511_QHF_FH_JSI11i_2	40.352	11.203			1.5145	1.5657	31.428	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9989	1.9553	NaN	1	0	Median	1.1475	1.2537	NaN	1	0	Median	69120000	30584000	38536000	0	0	0	0	0	0	41927000	17737000	24190000	27193000	12847000	14346000	34695	2636	32831	213594;213595	288115	288115			1	
LTVNGFVEPHK	1	Unmodified	1239.6612	0.66117189	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		44.278	44.278	3	9.1074E-05	39114	160511_QHF_FH_JSI11i_3	60.161	51.207			1.3024	1.1933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3024	1.1933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69778000	25884000	43894000	0	0	0	0	0	0	69778000	25884000	43894000	0	0	0	34696	5323	32832	213596	288116	288116			1	
LTVQEEQIVELIEK	1	Unmodified	1669.9138	0.91381734	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.82	98.645	2	0.048353	86520	160511_QHF_FH_JSI11i_2	45.077	20.696			0.17422	0.17528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17422	0.17528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28489000	22267000	6222100	0	0	0	0	0	0	28489000	22267000	6222100	0	0	0	34697	1779	32833	213597	288117	288117			1	
LTVSNVLK	1	Unmodified	872.53312	0.53311783	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	6.16	4	4	2				1	4		3	3	4	5	51.244	47.22	2	0.0017225	40262	160511_QHF_FH_JSI12i_3	93.374	38.849			0.92985	0.97803	18.027	15	0	Median	0.92007	0.78018	28.216	3	0	Plateau	0.9256	1.1372	15.009	3	0	Plateau	1.0374	1.0206	13.029	4	0	Median	0.92985	0.97803	21.964	5	0	Median	4832100000	2478800000	2353300000	572890000	308030000	264860000	734140000	413200000	320940000	1794000000	875120000	918890000	1731100000	882490000	848580000	34698	793	32834	213598;213599;213600;213601;213602;213603;213604;213605;213606;213607;213608;213609;213610;213611;213612	288118;288119;288120;288121;288122;288123;288124;288125;288126;288127;288128;288129;288130;288131;288132;288133;288134;288135	288135			18	
LTVSQGNTSVQQDK	1	Unmodified	1503.7529	0.75290002	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.867	23.32	2	2.6634E-05	20448	160511_QHF_FH_JSI10i_1	118.87	91.977			1.2351	1.1111	32.037	4	1	Median	1.4972	1.2634	NaN	1	0	Median	0.76171	0.85228	NaN	1	1	Median	1.0189	0.97718	NaN	1	0	Median	1.7339	1.7653	NaN	1	0	Median	144220000	50072000	94150000	32763000	11299000	21464000	20250000	13087000	7162900	35691000	13767000	21924000	55519000	11920000	43599000	34699	3276	32835	213613;213614;213615;213616	288136;288137;288138	288138			3	
LTVSSLQESGLK	1	Unmodified	1260.6925	0.6925316	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		3	2	2	1	54.856	52.661	2	1.3599E-05	47655	160511_QHF_FH_JSI11i_1	115.42	26.34			1.0806	1.0617	12.006	7	2	Median	1.1252	0.95623	9.1578	2	1	Median	1.0101	1.2243	10.633	2	1	Median	1.0975	1.0913	7.2149	2	0	Median	0.93944	1.0617	NaN	1	0	Median	2130100000	1029400000	1100800000	271550000	130430000	141120000	648890000	335860000	313030000	880990000	403900000	477090000	328710000	159200000	169520000	34700	1192	32836	213617;213618;213619;213620;213621;213622;213623;213624	288139;288140;288141;288142;288143;288144;288145;288146;288147;288148;288149;288150;288151;288152;288153;288154;288155	288140			17	
LTVVDTPGYGDAINCR	0	Unmodified	1749.8356	0.83558379	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.573	58.928	2	2.7361E-40	53407	160511_QHF_FH_JSI11i_1	206.36	194.63			0.98472	0.9366	10.668	4	0	Median	1.1212	0.91203	NaN	1	0	Median	0.82608	0.96183	NaN	1	0	Median	0.88784	0.87198	NaN	1	0	Median	1.0922	1.1145	NaN	1	0	Median	264460000	135070000	129380000	35079000	15860000	19220000	50588000	32128000	18460000	94955000	47912000	47043000	83836000	39174000	44662000	34701	2603	32837	213625;213626;213627;213628	288156;288157;288158;288159;288160;288161;288162;288163	288157			8	
LTWEEKK	2	Unmodified	932.49673	0.49673232	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				24.675	23.355	2	0.058159	18877	160511_QHF_FH_JSI9i_3	41.502	13.328			1.2924	1.0577	NaN	1	0	Median	1.2924	1.0577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31391000	12754000	18637000	31391000	12754000	18637000	0	0	0	0	0	0	0	0	0	34702	637	32838	213629	288164	288164			1	
LTWFLLQK	1	Unmodified	1047.6117	0.6117025	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	2		2	88.965	84.008	2	0.0030778	41833	160513_QHF_FH_JSI12Kac_6	87.754	59.58			1.022	1.0512	36.692	5	0	Median	1.022	0.89759	NaN	1	0	Median	0.84074	0.99289	8.0731	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6347	1.7273	33.358	2	0	Median	248100000	108560000	139540000	79345000	32476000	46869000	85928000	50366000	35562000	0	0	0	82824000	25718000	57106000	34703	2309	32839	213630;213631;213632;213633;213634	288165;288166;288167;288168;288169	288168			5	
LTWFVNEGLVDGWDDPRFPTVR	0	Unmodified	2618.2918	0.29177193	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.172	87.451	3	1.3494E-07	50194	160513_QHF_FH_JSI10Kac_6	82.362	74.465			1.2761	1.5087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2761	1.5087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	167230000	71719000	95511000	0	0	0	167230000	71719000	95511000	0	0	0	0	0	0	34704	878	32840	213635	288170;288171	288171			2	
LTWGPYLWFYMLR	0	Unmodified	1744.88	0.87995521	3498	Q8N128	FAM177A1	Protein FAM177A1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.139	93.418	2	0.00039112	54779	160513_QHF_FH_JSI10Kac_6	86.136	73.559			0.8474	0.99686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8474	0.99686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102950000	51619000	51331000	0	0	0	102950000	51619000	51331000	0	0	0	0	0	0	34705	3498	32841	213636	288172	288172			1	
LTWHAYPEDAENK	1	Unmodified	1572.7209	0.72087161	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.48		6	9						4	4	5	5	5	43.865	40.948	2;3	3.4445E-10	34726	160511_QHF_FH_JSI12i_3	174.4	156.58			0.87169	1.0331	36.413	15	1	Median	0.66668	0.56908	5.0598	3	0	Median	0.58914	0.72346	25.11	4	1	Median	1.4231	1.4022	6.3353	4	0	Median	1.0934	1.1485	11.124	4	0	Median	2703800000	1206500000	1497300000	207420000	120880000	86542000	295220000	185610000	109610000	844300000	341580000	502720000	1356900000	558450000	798420000	34706	1572	32842	213637;213638;213639;213640;213641;213642;213643;213644;213645;213646;213647;213648;213649;213650;213651;213652;213653;213654;213655	288173;288174;288175;288176;288177;288178;288179;288180;288181;288182;288183;288184;288185;288186;288187;288188;288189;288190;288191;288192;288193;288194;288195;288196;288197;288198;288199;288200;288201;288202;288203;288204;288205	288201			32	
LTWHSCPEDEAQ	0	Unmodified	1471.6038	0.60379294	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.748	1	2	2								1	2	2	36.678	36.064	2	2.3188E-16	31652	160511_QHF_FH_JSI11i_3	166.34	164.31			1.2878	1.333	24.634	4	0	Median	NaN	NaN	NaN	0	0	Median	0.79235	0.95027	NaN	1	0	Median	1.4201	1.3547	NaN	1	0	Median	1.3847	1.5071	19.647	2	0	Median	312790000	149570000	163220000	0	0	0	74771000	41096000	33676000	82150000	40455000	41696000	155870000	68021000	87850000	34707	2367	32843	213656;213657;213658;213659;213660	288206;288207;288208;288209;288210;288211;288212;288213	288207			8	
LTWLHYLCTGEVK	1	Unmodified	1618.8177	0.81774888	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	3		1	78.262	70.778	2;3	0.00037786	39062	160513_QHF_FH_JSI10Kac_6	76.759	64.614			1.1127	1.2637	66.299	6	6	Median	1.2924	1.0943	125.15	2	2	Median	1.0168	1.216	46.806	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1796	1.265	NaN	1	1	Median	1722200000	683200000	1039000000	784010000	229420000	554590000	895470000	439590000	455880000	0	0	0	42711000	14188000	28523000	34708	2454	32844	213661;213662;213663;213664;213665;213666	288214;288215;288216;288217;288218;288219;288220	288217			7	
LTWLQNMAGK	1	Unmodified	1160.6012	0.60121417	4181	Q96N67;Q96HP0	DOCK7;DOCK6	Dedicator of cytokinesis protein 7;Dedicator of cytokinesis protein 6	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	63.624	63.028	2	8.4985E-05	54458	160511_QHF_FH_JSI12i_3	101.54	71.375			2.7761	2.2899	37.01	3	3	Median	2.7761	2.2571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.4881	4.3155	NaN	1	1	Median	2.2346	2.2899	NaN	1	1	Median	585640000	158360000	427270000	77448000	36263000	41186000	0	0	0	242100000	52727000	189370000	266090000	69375000	196720000	34709	4181	32845	213667;213668;213669	288221;288222;288223	288223			3	
LTWLTPLIPSTLLSLGGLPPLTGFLPK	1	Unmodified	2844.6769	0.67687552	796	P03891	MT-ND2	NADH-ubiquinone oxidoreductase chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	103.78	96.246	2;3;4	1.6955E-98	57995	160513_QHF_FH_JSI10Kac_6	223.29	206.6			0.80212	0.93262	37.311	6	0	Median	1.7733	1.4858	NaN	1	0	Median	0.84274	0.98832	16.385	3	0	Plateau	1.8789	1.7273	NaN	1	0	Median	0.67489	0.7129	NaN	1	0	Median	1782200000	949170000	833000000	193110000	66214000	126900000	1263200000	701010000	562150000	59376000	20813000	38562000	266530000	161140000	105390000	34710	796	32846	213670;213671;213672;213673;213674;213675	288224;288225;288226;288227;288228;288229;288230;288231;288232	288232			9	
LTWLYQLSK	1	Unmodified	1150.6386	0.63864553	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.712	77.952	2	3.7009E-05	65457	160511_QHF_FH_JSI10i_3	118.33	98.547			1.0926	1.1566	22.513	4	3	Median	1.103	0.87875	NaN	1	1	Median	1.0559	1.2281	NaN	1	1	Median	1.592	1.5052	NaN	1	1	Median	1.0822	1.0893	NaN	1	0	Median	387060000	190800000	196260000	52956000	28341000	24615000	64782000	33762000	31020000	106430000	51569000	54859000	162900000	77128000	85770000	34711	2453	32847	213676;213677;213678;213679	288233;288234;288235;288236	288234			4	
LTWTYAANVGEHDLLK	1	Unmodified	1829.9312	0.93119874	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.178	77.911	3	0.018804	67635	160511_QHF_FH_JSI12i_3	37.645	26.375			1.59	1.6722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.59	1.6722	NaN	1	1	Median	13665000	3232800	10432000	0	0	0	0	0	0	0	0	0	13665000	3232800	10432000	34712	3196	32848	213680	288237	288237			1	
LTYEIEDEK	1	Unmodified	1138.5394	0.539385	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.053	37.436	2	4.2746E-07	33187	160511_QHF_FH_JSI9i_1	138.98	95.729			0.97898	0.92491	9.2832	4	0	Median	1.1382	0.92098	NaN	1	0	Median	0.72614	0.85601	NaN	1	0	Median	0.9595	0.92886	NaN	1	0	Median	0.99885	1.069	NaN	1	0	Median	1883900000	903800000	980110000	401260000	207530000	193730000	529770000	260820000	268950000	539910000	246540000	293370000	412960000	188900000	224060000	34713	1085	32849	213681;213682;213683;213684	288238;288239;288240;288241;288242;288243;288244	288244			7	
LTYGTIAAIGEQNEER	0	Unmodified	1763.869	0.86899241	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		3	4					1		1	1	5	1	62.614	60.938	2;3	5.8783E-40	52585	160511_QHF_FH_JSI12i_3	200.44	172.43			1.1641	1.1128	15.286	8	2	Median	1.1455	1.0268	NaN	1	0	Median	0.72385	0.86744	NaN	1	0	Median	1.2389	1.1758	10.647	5	2	Median	0.94785	0.97612	NaN	1	0	Median	481940000	224390000	257550000	36400000	16214000	20185000	42649000	22942000	19707000	338190000	149720000	188470000	64698000	35513000	29185000	34714	714	32850	213685;213686;213687;213688;213689;213690;213691;213692	288245;288246;288247;288248;288249;288250;288251;288252;288253;288254;288255;288256;288257;288258	288258			14	
LTYGTMVFVR	0	Oxidation (M)	1201.6165	0.61652988	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.522	53.28	2	0.00017748	29423	160513_QHF_FH_JSI10Kac_6	93.598	53.329			1.015	1.0696	5.1863	4	0	Median	1.2643	1.0851	NaN	1	0	Median	0.96076	1.124	NaN	1	0	Median	1.0723	1.0543	NaN	1	0	Median	0.91569	0.99428	NaN	1	0	Median	228340000	116660000	111680000	53597000	23409000	30188000	69812000	33882000	35930000	43813000	23842000	19970000	61123000	35527000	25596000	34715	2624	32851	213693;213694;213695;213696	288259;288260;288261	288261		2056	3	
LTYGTMVFVR	0	Unmodified	1185.6216	0.62161526	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	74.284	65.595	2	1.9813E-12	36229	160513_QHF_FH_JSI10Kac_6	157.91	100.63			0.97927	0.98242	11.853	4	0	Median	1.1892	1.0133	NaN	1	0	Median	1.0032	1.2007	NaN	1	0	Median	0.95591	0.91894	NaN	1	0	Median	0.88583	0.95246	NaN	1	0	Median	1174600000	599740000	574880000	225850000	106890000	118960000	524950000	264210000	260740000	282630000	153150000	129480000	141190000	75490000	65700000	34716	2624	32851	213697;213698;213699;213700	288262;288263;288264	288264			3	
LTYHQLLER	0	Unmodified	1171.635	0.63495714	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			45.726	44.17	3	0.057211	36942	160511_QHF_FH_JSI10i_3	16.217	12.436			0.78712	0.91162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78712	0.91162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42346000	22799000	19547000	0	0	0	42346000	22799000	19547000	0	0	0	0	0	0	34717	1898	32852	213701	288265	288265			1	
LTYIDKWFLYK	2	Acetyl (K)	1530.8123	0.8122528	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		93.225	83.842	2	8.2032E-20	47219	160513_QHF_FH_JSI11Kac_6	168.79	134.07			0.32792	0.30833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32792	0.30833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78279000	64640000	13639000	0	0	0	0	0	0	78279000	64640000	13639000	0	0	0	34718	1372	32853	213702	288266	288266	1311		1	
LTYLGCASVNAPR	0	Unmodified	1420.7133	0.71328381	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.493								7	5	1	3	3	5	58.692	48.547	2;3	1.0472E-24	26643	160513_QHF_FH_JSI11Kac_5	162.26	132.59			1.0897	1.2373	26.133	11	3	Median	1.0118	0.88158	NaN	1	1	Median	0.9044	1.0723	11.913	3	1	Median	1.0596	1.0295	10.644	3	0	Plateau	1.6155	1.5706	8.2456	4	1	Linear	187050000	87574000	99480000	9587400	5265300	4322100	66131000	33053000	33078000	56237000	27876000	28361000	55098000	21379000	33719000	34719	5599	32854	213703;213704;213705;213706;213707;213708;213709;213710;213711;213712;213713;213714	288267;288268;288269;288270;288271;288272;288273;288274;288275;288276;288277;288278;288279;288280	288270			14	
LTYLLQNSLGGSAK	1	Unmodified	1463.7984	0.79839365	4486	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	64.511	64.221	2	2.4516E-07	56789	160511_QHF_FH_JSI11i_3	93.258	71.265			0.96941	0.99793	63.892	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96941	0.99793	63.892	2	2	Median	39284000	16699000	22584000	0	0	0	0	0	0	0	0	0	39284000	16699000	22584000	34720	4486	32855	213715;213716;213717;213718	288281;288282;288283;288284	288281			4	
LTYLVNLLTR	0	Unmodified	1204.718	0.71795849	5212	Q9P2E3	ZNFX1	NFX1-type zinc finger-containing protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.592	78.924	2	0.056336	44139	160513_QHF_FH_JSI10Kac_6	35.511	19.97			1.0704	1.2761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0704	1.2761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75789000	43045000	32745000	0	0	0	75789000	43045000	32745000	0	0	0	0	0	0	34721	5212	32856	213719	288285	288285			1	
LTYQDAVNLQNYVEEK	1	Unmodified	1925.9371	0.93707198	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	81.648	81.179	2	1.4583E-16	73947	160511_QHF_FH_JSI11i_1	118.13	78.21			0.94431	0.94114	7.788	4	2	Median	1.0371	0.83555	NaN	1	1	Median	0.84751	1.0022	NaN	1	0	Median	1.0265	0.96105	NaN	1	1	Median	0.86872	0.92165	NaN	1	0	Median	146020000	71180000	74842000	26487000	9156400	17331000	45842000	23913000	21929000	24314000	11148000	13166000	49378000	26963000	22415000	34722	641	32857	213720;213721;213722;213723;213724	288286;288287;288288;288289;288290;288291;288292	288287			7	
LTYSHGNYLFHYICQDR	0	Unmodified	2186.0004	0.0003577111	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	71.541	62.795	3;4	9.3454E-06	34207	160513_QHF_FH_JSI10Kac_6	94.856	89.012			1.2413	1.2831	26.154	6	1	Median	1.6318	1.3945	NaN	1	0	Median	1.2977	1.5503	35.621	2	0	Median	1.2761	1.2799	NaN	1	0	Median	1.0216	1.067	26.442	2	1	Median	218960000	98918000	120050000	19331000	7153300	12178000	98034000	43971000	54063000	36735000	17084000	19652000	64863000	30709000	34154000	34723	1754	32858	213725;213726;213727;213728;213729;213730	288293;288294;288295;288296;288297;288298	288296			6	
LVAAEQQK	1	Unmodified	885.49198	0.4919813	5662	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	8.8965	8.5206	2	0.0075998	5967	160511_QHF_FH_JSI9i_1	68.787	15.624			1.1428	1.1797	35.391	5	2	Median	1.3512	1.1498	17.08	2	1	Median	1.0141	1.1797	NaN	1	0	Median	0.55532	0.54372	NaN	1	0	Median	1.1428	1.2036	NaN	1	1	Median	1403200000	720800000	682400000	344140000	162480000	181670000	370230000	162580000	207640000	391030000	232790000	158240000	297810000	162950000	134860000	34724	5662	32859	213731;213732;213733;213734;213735	288299;288300;288301;288302	288302			4	
LVAAMEEVFMDK	1	Unmodified	1381.6622	0.66215945	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.99	79.837	2	0.0029026	69013	160511_QHF_FH_JSI12i_2	58.592	48.069			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34725	4140	32860	213736	288303	288303			1	
LVAEDIPLLFSLLSDVFPGVQYHR	0	Unmodified	2727.4636	0.46358829	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.52	96.802	3;4	7.2983E-27	57196	160513_QHF_FH_JSI10Kac_6	136.56	124.13			0.95781	1.1417	13.718	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95781	1.1417	13.718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	863000000	438640000	424360000	0	0	0	863000000	438640000	424360000	0	0	0	0	0	0	34726	2517	32861	213737;213738	288304;288305	288304			2	
LVAENKFGK	2	Acetyl (K)	1046.576	0.57604528	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		46.633	36.347	2	0.016771	21560	160513_QHF_FH_JSI11Kac_4	56.659	37.555			0.47455	0.51209	133.77	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1193	1.3187	NaN	1	0	Median	0.20119	0.19886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29481000	21457000	8024000	0	0	0	3871200	1892100	1979200	25610000	19565000	6044900	0	0	0	34727	2770	32862	213739;213740	288306	288306	2674		1	
LVAEWEGQDSDSDQLFYTK	1	Unmodified	2230.0066	0.0066081055	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		76.997	76.671	2	5.3068E-11	69753	160511_QHF_FH_JSI11i_1	109.22	96.453			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34728	2194	32863	213741	288307	288307			1	
LVAFGTSHGFGLFDHQQR	0	Unmodified	2015.9966	0.99659296	3093	Q6P1M3	LLGL2	Lethal(2) giant larvae protein homolog 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.724	66.352	4	0.054592	36536	160513_QHF_FH_JSI10Kac_6	25.586	16.54			0.69104	0.81492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69104	0.81492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47513000	30005000	17509000	0	0	0	47513000	30005000	17509000	0	0	0	0	0	0	34729	3093	32864	213742	288308	288308			1	
LVAGEHGLIIR	0	Unmodified	1176.6979	0.69789175	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.57		5	8						2	3	4	2	6	42.877	41.198	2;3	1.1989E-07	36045	160511_QHF_FH_JSI11i_3	115.18	91.426			0.91979	0.89323	26.795	11	3	Median	1.442	1.0935	19.995	3	0	Plateau	0.69104	0.85735	2.0753	3	1	Plateau	0.89153	0.83845	3.0268	2	0	Median	1.0863	1.171	50.73	3	2	Median	2467100000	1489900000	977180000	280560000	122590000	157970000	256960000	156950000	100010000	808190000	447170000	361030000	1121300000	763180000	358170000	34730	387	32865	213743;213744;213745;213746;213747;213748;213749;213750;213751;213752;213753;213754;213755;213756;213757	288309;288310;288311;288312;288313;288314;288315;288316;288317;288318;288319;288320;288321;288322;288323;288324	288310			15	
LVAGEMGQNEPDQGGQR	0	Oxidation (M)	1800.8061	0.80607458	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.68	13					3				2	3	7	4	22.294	20.105	2;3	4.5242E-40	22705	160511_QHF_FH_JSI9i_1	201.48	185.94			1.1498	1.1382	53.122	12	2	Median	1.3034	1.0864	2.6482	2	0	Median	0.86325	1.0261	18.717	2	0	Median	1.161	1.1704	81.525	5	2	Median	1.1388	1.238	16.322	3	0	Median	1012900000	482110000	530840000	293760000	140040000	153720000	84744000	46079000	38665000	362200000	158500000	203700000	272240000	137480000	134760000	34731	4304	32866	213758;213759;213760;213761;213762;213763;213764;213765;213766;213767;213768;213769;213770;213771;213772;213773	288325;288326;288327;288328;288329;288330;288331;288332;288333;288334;288335;288336;288337;288338;288339;288340;288341;288342;288343;288344;288345;288346	288344		2437	22	
LVAGEMGQNEPDQGGQR	0	Unmodified	1784.8112	0.81115996	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.83	8	6				6	3			4	8	5	6	30.11	26.178	2;3	9.2337E-238	23359	160511_QHF_FH_JSI11i_1	434.18	417.16			1.0784	1.0468	19.047	20	3	Median	1.214	0.99336	29.063	3	1	Median	0.84791	1.0318	18.273	7	1	Median	1.1454	1.1238	7.2858	5	1	Median	1.0556	1.1469	16.043	5	0	Median	5463400000	2730300000	2733000000	1302900000	523030000	779890000	1426600000	782170000	644450000	1376500000	696000000	680460000	1357400000	729130000	628250000	34732	4304	32866	213774;213775;213776;213777;213778;213779;213780;213781;213782;213783;213784;213785;213786;213787;213788;213789;213790;213791;213792;213793;213794;213795;213796	288347;288348;288349;288350;288351;288352;288353;288354;288355;288356;288357;288358;288359;288360;288361;288362;288363;288364;288365;288366;288367;288368;288369;288370;288371;288372;288373;288374;288375;288376;288377;288378;288379;288380;288381;288382;288383;288384;288385	288349			39	
LVAIVDPHIK	1	Unmodified	1103.6703	0.67028001	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	5.98		9	7					1	5	7	5	5	5	53.118	49.786	2;3	1.9405E-05	43823	160511_QHF_FH_JSI9i_2	86.898	69.667			0.94636	0.93432	24.802	22	6	Median	1.0823	0.89759	28.227	7	3	Median	0.68816	0.84664	28.943	5	2	Median	0.95311	0.96026	7.5675	5	0	Median	0.98218	1.0412	19.091	5	1	Median	7027700000	3571900000	3455800000	1257300000	593970000	663320000	1533800000	883340000	650440000	2501200000	1218100000	1283100000	1735400000	876500000	858950000	34733	2569	32867	213797;213798;213799;213800;213801;213802;213803;213804;213805;213806;213807;213808;213809;213810;213811;213812;213813;213814;213815;213816;213817;213818	288386;288387;288388;288389;288390;288391;288392;288393;288394;288395;288396;288397;288398;288399;288400;288401;288402;288403;288404;288405;288406;288407;288408;288409;288410;288411;288412;288413;288414;288415;288416;288417	288401			31	
LVAIVDPHIKVDSGYR	1	Acetyl (K)	1822.9941	0.99413335	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.182	66.546	3	0.020581	35422	160513_QHF_FH_JSI11Kac_5	45.438	35.381			0.099093	0.097849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.099093	0.097849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1824200	1318300	505880	0	0	0	0	0	0	1824200	1318300	505880	0	0	0	34734	2569	32868	213819	288418	288418	2542		1	
LVAIVDVIDQNR	0	Unmodified	1353.7616	0.76161421	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.47	4	8	6				4	5	5	4	10	8	10	79.549	75.148	2;3	1.0089E-22	68289	160511_QHF_FH_JSI11i_2	205.09	188.96			1.0329	1.0704	56.652	29	15	Median	1.3034	1.0819	49.35	4	1	Median	0.87528	1.0243	64.021	7	3	Median	1.1777	1.1832	59.089	8	5	Median	0.93561	1.0374	59.877	10	6	Median	6509800000	3101600000	3408300000	811900000	371950000	439950000	1621900000	822970000	798960000	2225500000	1041900000	1183700000	1850500000	864770000	985690000	34735	1720	32869	213820;213821;213822;213823;213824;213825;213826;213827;213828;213829;213830;213831;213832;213833;213834;213835;213836;213837;213838;213839;213840;213841;213842;213843;213844;213845;213846;213847;213848;213849;213850;213851	288419;288420;288421;288422;288423;288424;288425;288426;288427;288428;288429;288430;288431;288432;288433;288434;288435;288436;288437;288438;288439;288440;288441;288442;288443;288444;288445;288446;288447;288448;288449;288450;288451;288452;288453;288454;288455;288456;288457;288458	288441			40	
LVAKPGDK	2	Unmodified	826.49125	0.49125301	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	1		By matching		By MS/MS	3	0			2								1		1	7.8197	7.5932	3	0.060057	5121	160511_QHF_FH_JSI12i_3	24.03	7.8861			1.2145	1.3235	24.989	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3473	1.5793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0948	1.1091	NaN	1	0	Median	121600000	57511000	64085000	0	0	0	25635000	11146000	14489000	0	0	0	95961000	46365000	49595000	34736	5446	32870	213852;213853	288459	288459			1	
LVALAVIDEK	1	Unmodified	1069.6383	0.63831118	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	5.2		1						4		1	1	1	2	75.209	64.646	2	6.1216E-06	34472	160513_QHF_FH_JSI11Kac_5	113.18	65.978			0.76834	0.75064	22.234	4	1	Median	0.96534	0.77516	NaN	1	0	Median	0.61154	0.72689	NaN	1	0	Median	1.0286	1.0055	NaN	1	0	Median	0.52987	0.58601	NaN	1	1	Median	26390000	14673000	11717000	2423400	1118800	1304600	3650000	2459100	1190900	11675000	6606000	5069400	8641200	4489400	4151800	34737	4142	32871	213854;213855;213856;213857;213858	288460;288461;288462;288463;288464;288465	288463			6	
LVALHTFGLFYQR	0	Unmodified	1563.8562	0.8561833	3139	Q6SJ93	FAM111B	Protein FAM111B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.824	72.566	3	1.2697E-20	40581	160513_QHF_FH_JSI10Kac_6	153.74	134.34			0.78759	0.86202	23.815	4	0	Median	0.70361	0.6024	NaN	1	0	Median	0.85819	1.0296	NaN	1	0	Median	0.988	0.9486	NaN	1	0	Median	0.7228	0.78334	NaN	1	0	Median	754780000	417090000	337700000	104540000	66903000	37633000	473780000	259980000	213800000	114510000	50724000	63787000	61956000	39477000	22479000	34738	3139	32872	213859;213860;213861;213862	288466;288467;288468;288469;288470;288471;288472;288473	288473			8	
LVALLNTLDR	0	Unmodified	1126.671	0.67100829	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	71.898	71.262	2	1.1357E-05	63408	160511_QHF_FH_JSI11i_3	114.28	41.021			5.0186	4.8685	35.254	6	6	Median	6.2138	5.4414	NaN	1	1	Median	6.1964	7.6495	NaN	1	1	Median	5.0186	4.8685	15.229	2	2	Median	3.1655	3.3091	30.136	2	2	Median	305910000	61804000	244100000	32237000	5460000	26777000	28915000	3465500	25449000	136850000	22900000	113950000	107910000	29979000	77927000	34739	2645	32873	213863;213864;213865;213866;213867;213868	288474;288475;288476;288477;288478;288479	288474			6	
LVALNLDR	0	Unmodified	912.53927	0.53926584	5586	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	49.007	48.016	2	0.029041	42044	160511_QHF_FH_JSI9i_2	41.892	11.28			2.3411	2.3449	11.422	3	1	Plateau	2.5655	2.1777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3411	2.3449	NaN	1	0	Median	1.6271	1.874	NaN	1	1	Median	194400000	68802000	125600000	54924000	18623000	36301000	0	0	0	73026000	25249000	47777000	66452000	24930000	41522000	34740	5586	32874	213869;213870;213871	288480;288481;288482	288481			3	
LVALQLR	0	Unmodified	811.52797	0.52797287	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	48.722	47.888	2	0.036298	40717	160511_QHF_FH_JSI12i_3	49.211	4.6797			0.69081	0.75733	15.683	5	0	Median	0.89913	0.75733	NaN	1	0	Median	0.58019	0.69697	NaN	1	0	Median	0.69081	0.68687	NaN	1	0	Median	0.83375	0.8863	18.991	2	0	Median	598050000	319000000	279060000	64714000	30817000	33897000	74323000	47806000	26517000	50756000	29060000	21696000	408260000	211310000	196950000	34741	3950	32875	213872;213873;213874;213875;213876	288483	288483			1	
LVALVNK	1	Unmodified	755.49052	0.49052473	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.124	30.889	2	0.029706	27649	160511_QHF_FH_JSI11i_1	54.525	16.154			1.2153	1.1805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2153	1.1805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15275000	6431900	8842600	0	0	0	0	0	0	15275000	6431900	8842600	0	0	0	34742	2591	32876	213877	288484	288484			1	
LVAMGSAWPWLLHSVR	0	Unmodified	1821.9712	0.97122983	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.947	80.663	3	5.5078E-33	46400	160513_QHF_FH_JSI10Kac_6	164.65	146.51			0.91096	0.95402	20.068	4	1	Linear	1.1927	1.0358	NaN	1	0	Median	0.8635	1.0318	NaN	1	0	Median	1.3027	1.2277	NaN	1	0	Median	1.511	1.5805	NaN	1	1	Median	1240900000	605000000	635860000	250570000	113170000	137400000	651010000	336720000	314290000	215470000	93944000	121530000	123820000	61178000	62643000	34743	2305	32877	213878;213879;213880;213881	288485;288486;288487;288488;288489;288490;288491	288491			7	
LVAMGSAWPWLLHSVR	0	Oxidation (M)	1837.9661	0.96614446	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			82.276	76.683	3	0.0037737	42456	160513_QHF_FH_JSI10Kac_6	58.461	47.607			0.10926	0.13062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10926	0.13062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	596490000	532520000	63970000	0	0	0	596490000	532520000	63970000	0	0	0	0	0	0	34744	2305	32877	213882	288492	288492		1907	1	
LVAMKFLR	1	Acetyl (K)	1018.5998	0.59975761	1209	P22392	NME2	Nucleoside diphosphate kinase B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	77.332	68.996	2	0.003366	37376	160513_QHF_FH_JSI11Kac_6	91.626	49.974			0.21874	0.20467	113.72	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0679	1.2743	NaN	1	0	Median	0.21874	0.20467	NaN	1	0	Median	0.14697	0.15833	NaN	1	0	Median	284710000	220120000	64585000	0	0	0	74965000	40326000	34639000	194090000	166180000	27911000	15652000	13617000	2034700	34745	1209	32878	213883;213884;213885	288493;288494;288495	288494	1086		3	
LVANHVASDISLTGGSVVQR	0	Unmodified	2022.0858	0.0858019	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	56.68	55.94	3	1.0279E-08	49689	160511_QHF_FH_JSI11i_3	105.38	101.54			0.88678	0.99931	24.627	5	0	Median	1.6946	1.4554	NaN	1	0	Median	0.83076	0.97333	3.7257	2	0	Median	1.1771	1.0897	NaN	1	0	Median	0.73738	0.73646	NaN	1	0	Median	259310000	133410000	125900000	35696000	15426000	20270000	74963000	38172000	36791000	72673000	33929000	38744000	75978000	45882000	30095000	34746	5258	32879	213886;213887;213888;213889;213890	288496;288497;288498;288499;288500;288501;288502	288497			6	
LVAQLYK	1	Unmodified	833.50109	0.50108942	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.58	3	5	2					1	4	3	3	4	5	37.645	33.982	2	0.010464	28734	160511_QHF_FH_JSI11i_2	74.717	39.825			0.98532	0.9581	46.552	15	3	Median	1.1616	0.9581	42.447	3	1	Median	0.78291	0.94184	14.647	3	0	Median	0.997	0.98423	6.9448	4	0	Median	0.8663	0.9552	77.323	5	2	Median	7129600000	2880600000	4249100000	1147000000	464210000	682830000	1660300000	760440000	899890000	2076800000	828940000	1247900000	2245400000	826960000	1418500000	34747	517	32880	213891;213892;213893;213894;213895;213896;213897;213898;213899;213900;213901;213902;213903;213904;213905	288503;288504;288505;288506;288507;288508;288509;288510;288511;288512;288513;288514	288508			12	
LVAQLYKIVPNVLLEQGK	2	Acetyl (K)	2066.214	0.21396253	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	95.616	86.195	3	2.6851E-05	48775	160513_QHF_FH_JSI11Kac_6	77.39	67.641			1.0884	1.0929	72.633	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69613	0.65395	NaN	1	0	Median	1.7017	1.8266	NaN	1	0	Median	229650000	151210000	78443000	0	0	0	0	0	0	139760000	94631000	45132000	89889000	56578000	33311000	34748	517	32881	213906;213907	288515;288516	288515	267		2	
LVARPEPATGYTLEFR	0	Unmodified	1818.9628	0.96283322	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.61	5.57		5	9						4	6	5	4	3	61.764	59.028	2;3	4.5318E-29	48506	160511_QHF_FH_JSI9i_3	173.19	156.25			1.0183	0.97792	16.105	18	5	Median	1.2474	1.0291	10.452	6	3	Median	0.78302	1.0536	12.2	5	2	Linear	1.017	0.967	14.757	4	0	Median	0.73933	0.76194	24.769	3	0	Median	16491000000	7314500000	9176400000	4728500000	1597100000	3131400000	9212300000	4519700000	4692600000	2012200000	921330000	1090900000	537940000	276370000	261570000	34749	2751	32882	213908;213909;213910;213911;213912;213913;213914;213915;213916;213917;213918;213919;213920;213921;213922;213923;213924;213925	288517;288518;288519;288520;288521;288522;288523;288524;288525;288526;288527;288528;288529;288530;288531;288532;288533;288534;288535;288536;288537;288538;288539;288540;288541;288542;288543	288528			27	
LVASAEQLLK	1	Unmodified	1070.6336	0.63356015	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								2	3	3	1	55.094	54.388	2	3.714E-05	47758	160511_QHF_FH_JSI9i_2	105.4	51.239			0.74135	0.7685	38.703	9	8	Median	0.89051	0.76811	41.884	2	2	Median	0.65742	0.7685	42.063	3	3	Median	1.4175	1.3716	40.771	3	2	Median	0.68912	0.70492	NaN	1	1	Median	1245300000	612660000	632650000	248720000	137890000	110830000	301170000	159370000	141800000	628070000	289630000	338440000	67350000	25770000	41580000	34750	5119	32883	213926;213927;213928;213929;213930;213931;213932;213933;213934	288544;288545;288546;288547;288548;288549;288550;288551;288552;288553	288548			10	
LVASAYSIAQK	1	Unmodified	1149.6394	0.63937381	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.49	3	4	3				4	2	3	3	6	6	4	44.658	39.865	2	1.8843E-05	35129	160511_QHF_FH_JSI10i_2	103.7	73.891			0.99316	0.94863	20.857	16	2	Median	1.0935	0.93141	3.0848	3	0	Median	0.74859	0.91707	26.309	3	1	Median	0.99316	0.97646	14.039	6	0	Median	1.0325	1.0927	32.779	4	1	Median	1583400000	858940000	724480000	226440000	110090000	116360000	356480000	211040000	145440000	583690000	308590000	275110000	416800000	229230000	187580000	34751	738	32884	213935;213936;213937;213938;213939;213940;213941;213942;213943;213944;213945;213946;213947;213948;213949;213950;213951;213952;213953	288554;288555;288556;288557;288558;288559;288560;288561;288562;288563;288564;288565;288566;288567;288568;288569;288570;288571;288572;288573;288574;288575;288576;288577;288578	288574			25	
LVASLWGAER	0	Unmodified	1100.5978	0.59784335	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	57.948	56.839	2	0.0013717	47657	160511_QHF_FH_JSI10i_3	66.27	50.389			1.1188	1.1232	7.3926	3	0	Median	1.5258	1.2385	NaN	1	0	Median	0.9415	1.0713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1188	1.1232	NaN	1	0	Median	120050000	51455000	68591000	23635000	7842700	15793000	34138000	16741000	17397000	0	0	0	62272000	26871000	35401000	34752	3282	32885	213954;213955;213956	288579	288579			1	
LVATWLTLPVALLETMFGVK	1	Unmodified	2201.2534	0.2533845	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		105.91	98.046	2;3	4.321E-87	59353	160513_QHF_FH_JSI10Kac_6	278.97	242.12			1.1295	0.97882	11.55	5	1	Median	1.1394	0.9778	0.1469	2	1	Median	0.77395	0.92465	15.172	2	0	Median	1.1704	1.1434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1228300000	637940000	590330000	191170000	83829000	107350000	1031900000	551590000	480340000	5162100	2523000	2639100	0	0	0	34753	3154	32886	213957;213958;213959;213960;213961	288580;288581;288582;288583;288584;288585;288586;288587;288588	288585			9	
LVATWLTLPVALLETMFGVK	1	Oxidation (M)	2217.2483	0.24829912	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			102.3	96.576	3	1.852E-06	57066	160513_QHF_FH_JSI10Kac_6	80.859	71.762			0.58844	0.69428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58844	0.69428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23443000	13960000	9483700	0	0	0	23443000	13960000	9483700	0	0	0	0	0	0	34754	3154	32886	213962	288589	288589		2206	1	
LVAVGGFSPNVNHGELLNAAIEALK	1	Unmodified	2532.37	0.37002225	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	101.19	101.11	3	4.3172E-108	83649	160511_QHF_FH_JSI10i_3	265.64	234.87			0.99564	1.0534	16.129	4	0	Median	1.454	1.1887	NaN	1	0	Median	0.84499	0.98269	NaN	1	0	Median	1.1731	1.1292	NaN	1	0	Median	0.83201	0.82916	NaN	1	0	Median	1082300000	527580000	554740000	347060000	144560000	202500000	333170000	172720000	160460000	176400000	79026000	97376000	225690000	131280000	94410000	34755	5113	32887	213963;213964;213965;213966	288590;288591;288592;288593;288594	288591			5	
LVAVGGQPR	0	Unmodified	895.52395	0.52395013	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	1	2	2	19.134	18.729	2	0.00064292	15215	160511_QHF_FH_JSI11i_2	76.847	48.424			0.91727	0.95321	39.721	6	0	Median	1.2758	1.0778	NaN	1	0	Median	0.69295	0.84304	NaN	1	0	Median	0.81956	0.80249	50.267	2	0	Median	0.98197	1.0088	67.026	2	0	Median	1005100000	522150000	482900000	240140000	118490000	121650000	200440000	103510000	96929000	398540000	221240000	177300000	165920000	78907000	87017000	34756	3167	32888	213967;213968;213969;213970;213971;213972	288595;288596;288597;288598;288599;288600;288601;288602	288598			8	
LVAYYTLIGASGQR	0	Unmodified	1510.8144	0.81437807	780	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		75.882	69.511	2	5.8959E-06	36982	160513_QHF_FH_JSI11Kac_6	131.83	85.854			0.61878	0.74053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61878	0.74053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31225000	22348000	8877200	0	0	0	31225000	22348000	8877200	0	0	0	0	0	0	34757	780	32889	213973;213974	288603;288604	288603			2	
LVCGMVSYLNDLPSQR	0	Unmodified	1850.9019	0.90188922	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	80.468	80.468	2;3	4.11E-07	71884	160511_QHF_FH_JSI11i_3	90.653	79.748			0.86048	0.81724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86048	0.81724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25924000	15081000	10843000	0	0	0	0	0	0	25924000	15081000	10843000	0	0	0	34758	2624	32890	213975;213976;213977	288605;288606;288607	288606			3	
LVCSGLLQASK	1	Unmodified	1174.638	0.63799361	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	3	5	1							1	4	2	2	43.958	43.087	2	0.00011315	36773	160511_QHF_FH_JSI12i_2	97.456	75.928			1.3093	1.3861	45.738	9	8	Median	1.65	1.4353	NaN	1	0	Median	0.85366	0.97688	68.789	4	4	Median	1.4444	1.4128	17.522	2	2	Median	1.3511	1.4419	27.098	2	2	Median	416400000	183620000	232770000	31870000	9723000	22147000	151520000	75518000	76001000	127600000	50936000	76665000	105410000	47445000	57961000	34759	5300	32891	213978;213979;213980;213981;213982;213983;213984;213985;213986	288608;288609;288610;288611;288612;288613;288614;288615;288616	288609			9	
LVDAGFVWTEPHSK	1	Unmodified	1584.7936	0.79364262	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	61.041	60.145	3	0.0072801	52070	160511_QHF_FH_JSI11i_2	40.482	36.091			0.83324	1.0379	23.424	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83324	1.0379	NaN	1	0	Median	1.2088	1.2596	NaN	1	0	Median	0.71426	0.79021	NaN	1	0	Median	247190000	138550000	108640000	0	0	0	67929000	38769000	29160000	77181000	39839000	37342000	102080000	59942000	42137000	34760	4021	32892	213987;213988;213989	288617;288618	288617			2	
LVDEDFPEDSSSQK	1	Unmodified	1594.6999	0.6998614	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	3	2	1	38.874	38.249	2	3.0435E-23	34711	160511_QHF_FH_JSI12i_1	147.26	126.97			4.7042	4.6013	76.346	3	3	Plateau	1.367	1.1199	NaN	1	1	Median	3.2321	3.746	NaN	1	1	Median	4.7042	4.6013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	395720000	109500000	286220000	72383000	28834000	43549000	151340000	37115000	114220000	171990000	43549000	128440000	0	0	0	34761	24	32893	213990;213991;213992;213993;213994;213995;213996	288619;288620;288621;288622;288623;288624;288625;288626	288622			8	
LVDEEPQLTK	1	Unmodified	1170.6132	0.61321864	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	34.823	34.218	2	0.00028047	30095	160511_QHF_FH_JSI9i_1	89.08	65.726			0.74503	0.7582	2.9711	4	1	Median	0.94362	0.77739	NaN	1	1	Median	0.61483	0.73948	NaN	1	0	Median	0.76731	0.73789	NaN	1	0	Median	0.7234	0.77796	NaN	1	0	Median	2040600000	1176500000	864140000	468350000	246850000	221500000	603240000	381090000	222160000	584440000	341250000	243190000	384570000	207290000	177290000	34762	5279	32894	213997;213998;213999;214000;214001	288627;288628;288629;288630;288631;288632;288633	288633			7	
LVDELMEAPGDVEALAPPVR	0	Unmodified	2120.0824	0.082356006	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	94.916	94.677	2;3	2.3563E-11	86071	160511_QHF_FH_JSI12i_1	98.165	93.455			1.1016	1.1385	4.376	5	1	Median	1.3059	1.049	NaN	1	0	Median	1.0273	1.1564	2.2096	2	1	Median	1.1823	1.1569	NaN	1	0	Median	1.1016	1.1234	NaN	1	0	Median	259500000	117920000	141590000	39276000	13323000	25953000	79664000	38667000	40996000	84240000	38114000	46126000	56325000	27815000	28510000	34763	1637	32895	214002;214003;214004;214005;214006;214007;214008	288634;288635;288636;288637;288638;288639;288640;288641;288642;288643;288644;288645	288638			12	
LVDEYSLNAGK	1	Unmodified	1207.6085	0.60846762	1155	P19367	HK1	Hexokinase-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.874	38.269	2	0.00089166	34734	160511_QHF_FH_JSI12i_1	72.325	37.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34764	1155	32896	214009	288646	288646			1	
LVDFVIHFMEEIDK	1	Unmodified	1733.8698	0.86984404	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	96.423	88.015	3	1.2354E-07	47599	160513_QHF_FH_JSI12Kac_6	151.56	140.44			0.19177	0.20631	197.94	5	5	Median	1.2419	1.0655	352.48	2	2	Median	0.17152	0.20631	NaN	1	1	Median	0.19177	0.18776	NaN	1	1	Median	0.21691	0.2277	NaN	1	1	Median	808600000	388060000	420540000	161620000	84354000	77264000	255770000	124150000	131620000	156010000	76541000	79472000	235190000	103010000	132180000	34765	1905	32897	214010;214011;214012;214013;214014;214015;214016;214017	288647;288648;288649;288650;288651;288652;288653;288654	288652			8	
LVDHIDQTPGFSLQQLR	0	Unmodified	1966.0272	0.027224389	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	70.197	70.098	3	6.2378E-06	62425	160511_QHF_FH_JSI11i_3	86.367	70.74			1.1205	1.1944	16.324	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0541	0.97356	15.946	2	2	Median	1.1205	1.1944	NaN	1	0	Median	226190000	114270000	111920000	0	0	0	0	0	0	155640000	78889000	76749000	70555000	35385000	35170000	34766	3566	32898	214018;214019;214020	288655;288656;288657;288658	288655			4	
LVDIIAAVPPQYR	0	Unmodified	1453.8293	0.82929985	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									2	3	2	82.762	81.971	2;3	5.9094E-05	70810	160511_QHF_FH_JSI12i_2	107.79	100.51			0.86553	0.91494	19.277	6	2	Median	NaN	NaN	NaN	0	0	Median	0.6068	0.72454	13.297	2	1	Median	1.0511	1.0516	14.869	2	1	Median	0.86553	0.9212	5.7875	2	0	Median	109630000	61312000	48313000	0	0	0	24514000	13952000	10562000	39289000	19433000	19856000	45822000	27927000	17895000	34767	4815	32899	214021;214022;214023;214024;214025;214026;214027	288659;288660;288661;288662;288663;288664;288665	288659			7	
LVDIIAAVPPQYRK	1	Unmodified	1581.9243	0.92426287	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	69.491	69.05	3	0.0023068	59753	160511_QHF_FH_JSI12i_3	50.088	42.797			0.9402	1.2391	30.779	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.3788	1.6095	NaN	1	0	Median	1.3349	1.2391	27.878	2	1	Median	0.86396	0.85077	NaN	1	1	Median	88389000	40730000	47659000	0	0	0	9981300	4545200	5436100	35016000	16480000	18536000	43391000	19705000	23686000	34768	4815	32900	214028;214029;214030;214031;214032	288666;288667;288668;288669;288670	288670			5	
LVDLDWR	0	Unmodified	915.48142	0.48141661	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.551	58.217	2	0.022321	49879	160511_QHF_FH_JSI12i_2	56.122	7.6181			0.86386	0.92316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86386	0.92316	NaN	1	0	Median	26065000	12595000	13470000	0	0	0	0	0	0	0	0	0	26065000	12595000	13470000	34769	5170	32901	214033	288671;288672	288671			2	
LVDLLLVLLFEGRK	1	Unmodified	1627.0073	0.0072642149	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.993	92.273	3	2.6659E-10	53851	160513_QHF_FH_JSI10Kac_6	120.53	100.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34770	5409	32902	214034	288673	288673			1	
LVDMMER	0	Unmodified	892.41466	0.41465895	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1.5	0.5	2	2									2	1	1	31.794	31.234	2	0.013116	27406	160511_QHF_FH_JSI10i_2	68.312	57.243			0.60059	0.65075	33.254	4	1	Median	NaN	NaN	NaN	0	0	Median	0.76388	0.90878	33.953	2	0	Median	0.58369	0.59242	NaN	1	1	Median	0.53609	0.55263	NaN	1	0	Median	1719000000	894380000	824650000	0	0	0	780550000	407410000	373140000	849460000	432820000	416650000	89012000	54149000	34864000	34771	154	32903	214035;214036;214037;214038	288674;288675	288675			2	
LVDPERDMSLR	0	Unmodified	1329.6711	0.67108465	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		6	3					3		2	2	4	4	43.765	40.473	2;3	4.0498E-05	35658	160511_QHF_FH_JSI11i_3	76.655	61.453			0.99742	0.97784	55.82	11	4	Median	1.2874	1.0522	21.726	2	0	Median	0.87231	1.0515	14.01	2	0	Median	1.1834	1.1414	21.53	4	2	Median	0.92492	0.9275	99.915	3	2	Median	6987200000	3712100000	3275100000	629630000	235970000	393660000	845090000	502260000	342830000	2635300000	1106500000	1528800000	2877200000	1867400000	1009800000	34772	2536	32904	214039;214040;214041;214042;214043;214044;214045;214046;214047;214048;214049;214050	288676;288677;288678;288679;288680;288681;288682;288683;288684;288685;288686;288687;288688;288689;288690	288677			14	
LVDPLYSIK	1	Unmodified	1046.6012	0.60119739	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	66.062	65.574	2	0.00017136	59600	160511_QHF_FH_JSI11i_1	87.476	48.684			1.0576	1.0911	18.58	4	1	Median	NaN	NaN	NaN	0	0	Median	0.71663	0.85235	NaN	1	1	Median	1.266	1.2382	8.3339	2	0	Median	0.97019	1.0197	NaN	1	0	Median	432600000	213220000	219380000	0	0	0	60889000	37160000	23730000	341640000	162270000	179370000	30073000	13796000	16277000	34773	1596	32905	214051;214052;214053;214054	288691;288692;288693;288694	288691			4	
LVDPVAGSGGPGSR	0	Unmodified	1267.6521	0.65206377	692	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	32.862	31.945	2	0.00095897	27036	160511_QHF_FH_JSI12i_2	67.153	61.595			1.0426	1.1471	49.637	3	0	Median	1.5752	1.3697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52552	0.53795	NaN	1	0	Median	1.0426	1.1471	NaN	1	0	Median	216110000	143180000	72928000	42412000	21097000	21315000	0	0	0	136720000	101970000	34750000	36983000	20121000	16862000	34774	692	32906	214055;214056;214057	288695;288696;288697;288698;288699;288700	288696			6	
LVDQALLTMDTYLGQFPDIK	1	Unmodified	2280.1712	0.17117101	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	101.93	101.81	3	0.00023959	87734	160511_QHF_FH_JSI12i_2	53.553	38.131			1.3449	1.328	4.835	2	0	Median	1.5604	1.3742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1591	1.2834	NaN	1	0	Median	200500000	92929000	107570000	100290000	42757000	57533000	0	0	0	0	0	0	100210000	50172000	50039000	34775	146	32907	214058;214059	288701	288701			1	
LVDQNIFSFYLSR	0	Unmodified	1600.8249	0.82494275	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.143	80.794	2	0.017554	45239	160513_QHF_FH_JSI11Kac_6	59.227	34.373			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34776	869	32908	214060	288702	288702			1	
LVDQNLNK	1	Unmodified	942.51345	0.51344502	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.515	15.057	2	0.00049384	12447	160511_QHF_FH_JSI11i_1	106.42	64.913			0.79502	0.7447	52.528	4	1	Median	0.73805	0.59048	NaN	1	0	Median	0.54305	0.66035	NaN	1	0	Median	0.85639	0.83984	NaN	1	0	Median	1.8002	1.8898	NaN	1	1	Median	1011800000	468580000	543180000	245200000	126160000	119040000	274980000	149980000	124990000	246550000	92417000	154130000	245030000	100010000	145020000	34777	403	32909	214061;214062;214063;214064	288703;288704;288705;288706;288707	288703			5	
LVDQSGPPHEPK	1	Unmodified	1302.6568	0.65681479	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.19	4	8	1				2			3	3	4	5	15.969	14.5	2;3	9.9557E-06	11459	160511_QHF_FH_JSI11i_2	90.861	83.077			0.88532	0.93022	18.787	15	0	Median	1.2915	1.1018	12.982	3	0	Median	0.75154	0.92055	10.835	3	0	Plateau	1.1313	1.1371	19.658	4	0	Median	0.87195	0.93022	22.705	5	0	Median	1570600000	724030000	846580000	355990000	162170000	193820000	349540000	174050000	175490000	456750000	208640000	248110000	408330000	179180000	229150000	34778	1857	32910	214065;214066;214067;214068;214069;214070;214071;214072;214073;214074;214075;214076;214077;214078;214079	288708;288709;288710;288711;288712;288713;288714;288715;288716;288717;288718;288719;288720;288721;288722;288723;288724	288714			17	
LVDQSGPPHEPKFVYQAK	2	Acetyl (K)	2081.0582	0.058190166	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		61.873	51.086	3	0.00026478	27861	160513_QHF_FH_JSI11Kac_5	69.081	60.035			0.57982	0.62833	90.517	2	0	Median	NaN	NaN	NaN	0	0	Median	1.006	1.1917	NaN	1	0	Median	0.33418	0.3313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31227000	20684000	10544000	0	0	0	4713600	2650800	2062800	26514000	18033000	8480900	0	0	0	34779	1857	32911	214080;214081	288725;288726	288726	1871		2	
LVDRNTLLK	1	Unmodified	1070.6448	0.64479354	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			29.333	27.98	3	0.0047302	22719	160511_QHF_FH_JSI9i_3	40.994	23.763			1.2195	1.1705	94.108	2	0	Median	0.7328	0.60168	NaN	1	0	Median	2.0293	2.277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213380000	87016000	126360000	107800000	46203000	61595000	105580000	40813000	64768000	0	0	0	0	0	0	34780	1665	32912	214082;214083	288727	288727			1	
LVDTAWLEIMTK	1	Unmodified	1418.7479	0.74793799	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	99.988	99.782	2	0.00020243	85698	160511_QHF_FH_JSI12i_2	96.113	76.123			0.19732	0.21917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19732	0.21917	NaN	1	1	Median	63809000	52828000	10981000	0	0	0	0	0	0	0	0	0	63809000	52828000	10981000	34781	5330	32913	214084	288728	288728			1	
LVDTFLEDVK	1	Unmodified	1177.6231	0.62305505	61	CON__P34955			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	1	3	3	68.68	67.94	2	2.4471E-07	58513	160511_QHF_FH_JSI12i_2	114.86	89.284		+	0.83544	0.93128	43.991	7	4	Median	1.3366	1.1326	NaN	1	0	Median	0.97244	1.1803	NaN	1	0	Median	0.53773	0.52282	65.303	3	3	Median	0.75539	0.8096	19.802	2	1	Median	613570000	340690000	272880000	52373000	18241000	34132000	73112000	38488000	34624000	319770000	176060000	143710000	168320000	107900000	60416000	34782	61	32914	214085;214086;214087;214088;214089;214090;214091;214092	288729;288730;288731;288732;288733;288734;288735;288736	288731			8	
LVDVVAVILK	1	Unmodified	1067.6954	0.69543213	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	1	2	2	92.599	87.011	2	7.2502E-05	44787	160513_QHF_FH_JSI11Kac_6	96.668	69.879			0.47406	0.5897	23.439	5	5	Median	0.70416	0.59661	NaN	1	1	Median	0.47406	0.5897	NaN	1	1	Median	0.66634	0.65687	NaN	1	1	Median	0.3776	0.41356	16.077	2	2	Median	120120000	74172000	45946000	41710000	21206000	20504000	10767000	6635800	4130700	33412000	21301000	12111000	34229000	25029000	9200600	34783	4424	32915	214093;214094;214095;214096;214097;214098	288737;288738;288739;288740;288741;288742	288739			6	
LVDYLEGIRK	1	Unmodified	1204.6816	0.68157298	3991	Q96BR5	COA7	Cytochrome c oxidase assembly factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	51.113	50.669	3	0.0058335	43252	160511_QHF_FH_JSI12i_3	48.004	39.275			1.1567	1.3337	46.95	5	4	Median	1.1567	1.018	NaN	1	1	Median	1.0914	1.3337	NaN	1	0	Median	1.5989	1.4594	77.813	2	2	Median	2.1195	2.1204	NaN	1	1	Median	229960000	95829000	134130000	16855000	7511500	9343100	35127000	16106000	19022000	87878000	38680000	49198000	90100000	33531000	56569000	34784	3991	32916	214099;214100;214101;214102;214103	288743;288744;288745;288746;288747	288747			5	
LVEAISR	0	Unmodified	786.45995	0.45995289	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	20.576	19.859	2	0.047212	16394	160511_QHF_FH_JSI12i_2	43.814	12.511			0.85078	0.98798	10.999	4	0	Median	1.2301	1.0561	NaN	1	0	Median	0.82805	1.0263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85078	0.88629	9.9869	2	0	Median	569720000	292220000	277500000	179420000	75538000	103880000	166680000	90861000	75824000	0	0	0	223620000	125820000	97794000	34785	2517	32917	214104;214105;214106;214107	288748	288748			1	
LVEALAAATEK	1	Unmodified	1114.6234	0.6233894	4373	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		42.136	41.662	2	7.9501E-05	35839	160511_QHF_FH_JSI11i_2	100.48	58.368			5.1574	4.9058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.1574	4.9058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15421000	1956200	13465000	0	0	0	0	0	0	15421000	1956200	13465000	0	0	0	34786	4373	32918	214108;214109	288749;288750	288750			2	
LVEALCAAGHR	0	Unmodified	1195.6132	0.61317584	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									3	3	24.537	24.524	2;3	1.2039E-05	20870	160511_QHF_FH_JSI11i_3	127.68	108.58			0.34601	0.32707	83.735	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34601	0.32707	97.23	3	3	Plateau	0.25898	0.26127	15.556	2	2	Median	569500000	371030000	198470000	0	0	0	0	0	0	354000000	223430000	130570000	215500000	147600000	67903000	34787	1241	32919	214110;214111;214112;214113;214114;214115	288751;288752;288753;288754;288755;288756	288753			6	
LVEALCAEHQINLIK	1	Unmodified	1749.9447	0.94474031	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		10							6	3	4	4	5	68.35	64.466	2;3	1.9737E-15	56404	160511_QHF_FH_JSI11i_2	139.65	121.28			1.1006	1.1243	72.074	16	13	Median	1.5661	1.3276	47.762	3	3	Median	1.2118	1.466	83.315	4	4	Median	0.65656	0.65454	54.919	4	2	Median	0.8481	0.95205	89.976	5	4	Median	3503600000	1850000000	1653600000	113850000	35212000	78640000	945000000	549230000	395770000	1519000000	822500000	696460000	925810000	443040000	482770000	34788	1258	32920	214116;214117;214118;214119;214120;214121;214122;214123;214124;214125;214126;214127;214128;214129;214130;214131	288757;288758;288759;288760;288761;288762;288763;288764;288765;288766;288767;288768;288769;288770;288771;288772;288773;288774	288763			18	
LVEAVDGK	1	Unmodified	829.45453	0.45453316	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.38	16.898	2	0.0029335	14234	160511_QHF_FH_JSI10i_1	83.313	0			0.34757	0.3463	7.1839	4	4	Median	0.41646	0.33736	NaN	1	1	Median	0.30725	0.35548	NaN	1	1	Median	0.32956	0.32488	NaN	1	1	Median	0.36657	0.38349	NaN	1	1	Median	818430000	574100000	244320000	181140000	121690000	59457000	205260000	147940000	57328000	194950000	129240000	65712000	237070000	175240000	61823000	34789	3593	32921	214132;214133;214134;214135	288775;288776;288777;288778	288777			4	
LVEDEERR	0	Unmodified	1044.52	0.51998696	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.38		8	3					2	1	3	3	4	4	6.9144	4.7179	2;3	0.00014086	4711	160511_QHF_FH_JSI10i_2	136.8	109.83			1.0221	1.0332	25.815	13	0	Median	1.2224	1.0549	3.2398	3	0	Plateau	0.76755	0.94603	50.553	3	0	Plateau	1.0778	1.0652	15.084	4	0	Median	0.94464	0.94192	9.4534	3	0	Median	1717800000	910240000	807570000	257530000	120380000	137140000	448400000	273390000	175010000	521790000	260860000	260930000	490100000	255610000	234490000	34790	2517	32922	214136;214137;214138;214139;214140;214141;214142;214143;214144;214145;214146;214147;214148;214149	288779;288780;288781;288782;288783;288784;288785;288786;288787;288788;288789;288790;288791;288792;288793;288794;288795	288790			17	
LVEDHLAVQSLIR	0	Unmodified	1491.8409	0.84092717	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0		By matching	By matching	By MS/MS	2.75	0.433		1	3								1	1	2	62.811	62.037	2;3	8.0691E-05	53519	160511_QHF_FH_JSI12i_2	98.898	83.633			1.0039	1.1219	17.008	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97431	1.1081	NaN	1	0	Median	1.3063	1.2456	NaN	1	0	Median	0.92813	0.97646	21.387	2	0	Median	210990000	96078000	114910000	0	0	0	35839000	17410000	18429000	81925000	34694000	47231000	93225000	43974000	49251000	34791	2185	32923	214150;214151;214152;214153	288796;288797;288798	288796			3	
LVEDKPGSR	1	Unmodified	999.53491	0.53490874	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By matching	2.33	0.471		4	2							1	1	2	2	7.557	7.2913	2;3	0.0054824	5001	160511_QHF_FH_JSI11i_2	53.327	37.124			0.78242	0.83246	19.513	6	1	Median	0.96445	0.82964	NaN	1	0	Median	0.7132	0.87872	NaN	1	0	Median	0.86837	0.85426	3.1763	2	1	Median	0.58998	0.63056	25.496	2	0	Median	663160000	362730000	300430000	44693000	19660000	25033000	71239000	38557000	32683000	333780000	184870000	148900000	213450000	119640000	93808000	34792	2263	32924	214154;214155;214156;214157;214158;214159	288799;288800;288801	288801			3	
LVEDMENK	1	Unmodified	976.45355	0.45354688	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.413	16.956	2	0.030913	14418	160511_QHF_FH_JSI12i_1	49.833	35.847			0.12478	0.13075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12478	0.13075	NaN	1	1	Median	591940000	510940000	80999000	0	0	0	0	0	0	0	0	0	591940000	510940000	80999000	34793	1607	32925	214160	288802	288802			1	
LVEDMENK	1	Oxidation (M)	992.44846	0.4484615	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	12.519	7.4619	2	0.013344	14507	160511_QHF_FH_JSI12i_1	81.191	69.822			0.73369	0.84158	11.262	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71217	0.84158	NaN	1	0	Median	0.99553	0.96251	NaN	1	0	Median	0.73369	0.76953	NaN	1	1	Median	174920000	102730000	72181000	0	0	0	3819500	2209800	1609700	10380000	5210200	5169500	160720000	95314000	65402000	34794	1607	32925	214161;214162;214163	288803;288804	288803		1284	2	
LVEEEVNIPNRR	0	Unmodified	1466.7841	0.78414057	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.91		3	3					3		2	5	1	1	38.647	34.466	2;3	8.2592E-06	28771	160511_QHF_FH_JSI10i_3	105.46	78.491			0.7789	0.93646	21.56	9	3	Median	1.2614	1.0604	5.0584	2	1	Median	0.76798	0.89411	24.372	5	2	Median	1.2266	1.2099	NaN	1	0	Median	0.75837	0.83072	NaN	1	0	Median	900820000	470150000	430670000	208780000	98114000	110670000	687210000	369680000	317530000	3124800	1509800	1615000	1701700	847450	854270	34795	5160	32926	214164;214165;214166;214167;214168;214169;214170;214171;214172	288805;288806;288807;288808;288809;288810;288811;288812;288813	288807			9	
LVEEFMLLANMAVAHK	1	Unmodified	1814.9423	0.94229747	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				90.84	82.125	3	0.0040212	45918	160513_QHF_FH_JSI9Kac_6	55.66	41.619			4.5019	3.8552	NaN	1	1	Median	4.5019	3.8552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20076000	2168700	17908000	20076000	2168700	17908000	0	0	0	0	0	0	0	0	0	34796	3465	32927	214173	288814	288814			1	
LVEEGVPK	1	Unmodified	869.48583	0.48583328	125	O00400	SLC33A1	Acetyl-coenzyme A transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	40.951	40.167	2	0.05083	34205	160511_QHF_FH_JSI12i_2	37.094	20.95			0.80701	0.84244	12.744	5	0	Median	0.89014	0.815	NaN	1	0	Median	0.7889	0.84244	NaN	1	0	Median	1.0237	1.0171	NaN	1	0	Median	0.7531	0.80709	16.015	2	0	Median	40664000000	18570000000	22094000000	8302000000	3368300000	4933700000	10796000000	5269700000	5526400000	11313000000	4682100000	6631300000	10252000000	5250000000	5002500000	34797	125	32928	214174;214175;214176;214177;214178	288815;288816;288817	288816			3	
LVEEHLDSEIQK	1	Unmodified	1438.7304	0.73037367	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	3	1	35.613	34.844	2;3	6.0114E-05	29755	160511_QHF_FH_JSI11i_2	107.83	72.607			1.2088	1.2136	40.185	6	6	Median	1.2276	1.0491	NaN	1	1	Median	1.1903	1.4573	NaN	1	1	Median	0.7224	0.7279	45.005	3	3	Median	1.4762	1.5592	NaN	1	1	Median	154740000	78386000	76358000	21286000	8628200	12658000	14608000	5481600	9126400	101660000	58207000	43451000	17193000	6069500	11123000	34798	171	32929	214179;214180;214181;214182;214183;214184;214185	288818;288819;288820;288821;288822;288823;288824	288823			7	
LVEEIEQMNNLFQQK	1	Unmodified	1861.9244	0.9243988	2458	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		82.81	82.198	3	0.00051124	72306	160511_QHF_FH_JSI11i_2	59.248	48.303			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34799	2458	32930	214186	288825	288825			1	
LVEEQNAEK	1	Unmodified	1058.5244	0.52440364	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3874	9.0218	2	9.0998E-06	6768	160511_QHF_FH_JSI10i_1	111.95	84.693			0.77282	0.94747	9.0151	4	0	Linear	1.3284	1.1043	NaN	1	0	Median	0.84374	0.98025	NaN	1	0	Median	0.92731	0.90888	NaN	1	0	Median	0.8746	0.91578	NaN	1	0	Median	745830000	349520000	396310000	165810000	76126000	89685000	209300000	88011000	121290000	173010000	83926000	89085000	197710000	101460000	96249000	34800	2883	32931	214187;214188;214189;214190	288826;288827;288828;288829;288830;288831	288828			6	
LVEFSAFLEQQRDPDSYNK	1	Unmodified	2285.0964	0.096426166	1308	P28347	TEAD1	Transcriptional enhancer factor TEF-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	76.792	76.654	3	0.012913	66593	160511_QHF_FH_JSI12i_3	38.915	16.694			0.69441	0.69168	29.046	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91222	0.84938	NaN	1	1	Median	0.5286	0.56326	NaN	1	1	Median	125900000	75252000	50645000	0	0	0	0	0	0	77644000	46524000	31120000	48253000	28727000	19525000	34801	1308	32932	214191;214192	288832;288833;288834	288834			3	
LVEGILHAPDAGWGNLVYVVNYPK	1	Unmodified	2623.3799	0.37985866	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.62		4	2						10	4	3	5	4	95.144	89.82	3;4	2.0631E-129	46296	160513_QHF_FH_JSI11Kac_6	252.31	237.98			1.1338	1.1875	54.278	16	8	Median	1.1253	0.95772	20.035	4	3	Median	0.84238	1.0063	9.143	3	1	Plateau	1.44	1.3832	98.167	5	3	Median	1.1338	1.2355	25.386	4	1	Median	4659500000	2154600000	2504900000	1104700000	463740000	640940000	1101900000	564780000	537130000	1439800000	667480000	772310000	1013100000	458590000	554500000	34802	2360	32933	214193;214194;214195;214196;214197;214198;214199;214200;214201;214202;214203;214204;214205;214206;214207;214208	288835;288836;288837;288838;288839;288840;288841;288842;288843;288844;288845;288846;288847;288848;288849;288850;288851;288852;288853;288854;288855;288856	288837			22	
LVEGPPPPPEPPK	1	Unmodified	1352.734	0.73400248	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	1	3	3	43.073	42.388	2;3	1.7709E-08	38176	160511_QHF_FH_JSI11i_1	101.95	82.167			0.97656	0.95927	7.9186	8	3	Median	1.1561	0.94727	2.2925	2	0	Median	0.80502	0.9558	NaN	1	0	Median	1.0765	1.0493	8.1309	2	1	Median	0.92466	0.94534	7.9411	3	2	Median	457380000	228210000	229160000	94951000	48188000	46762000	53398000	29567000	23831000	131560000	56769000	74790000	177470000	93690000	83779000	34803	5074	32934	214209;214210;214211;214212;214213;214214;214215;214216;214217	288857;288858;288859;288860;288861;288862;288863;288864;288865;288866	288859			9	
LVEGQEK	1	Unmodified	801.42323	0.42323303	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	6.7464	3.4123	2	0.04193	4033	160511_QHF_FH_JSI10i_1	46.426	4.9236			0.80968	0.88155	12.457	7	0	Median	1.1061	0.88155	NaN	1	0	Median	0.80968	0.93889	NaN	1	0	Median	0.78587	0.76784	3.7992	2	0	Median	0.93377	0.99292	16.664	3	0	Plateau	4453200000	2348600000	2104700000	962700000	489110000	473600000	1096200000	668250000	427930000	1179400000	560080000	619330000	1214900000	631120000	583800000	34804	434	32935	214218;214219;214220;214221;214222;214223;214224	288867;288868;288869;288870	288868			4	
LVEGQEKLHQMWLSWNQK	2	Acetyl (K)	2295.147	0.14702195	434	O60664	PLIN3	Perilipin-3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.213	74.896	3	1.9244E-07	41371	160513_QHF_FH_JSI11Kac_6	160.67	136.08			0.22136	0.20376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22136	0.20376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55516000	52267000	3248900	0	0	0	0	0	0	55516000	52267000	3248900	0	0	0	34805	434	32936	214225	288871	288871	220		1	
LVEHGLNETIHIR	0	Unmodified	1529.8314	0.83142511	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	38.655	38.565	3;4	2.8428E-05	32809	160511_QHF_FH_JSI12i_3	88.122	73.436			1.2661	1.2432	24.701	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1077	1.032	35.092	2	0	Median	1.2661	1.2749	12.321	2	0	Median	598580000	295550000	303020000	0	0	0	0	0	0	248530000	107610000	140920000	350040000	187940000	162100000	34806	3258	32937	214226;214227;214228;214229	288872;288873;288874;288875;288876;288877;288878;288879	288877			8	
LVEHLHNFILFR	0	Unmodified	1536.8565	0.85651765	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	73.579	65.282	3;4	1.8028E-06	35769	160513_QHF_FH_JSI10Kac_6	106.49	90.736			1.1362	1.1157	58.056	6	2	Median	1.0462	0.89636	NaN	1	0	Median	2.109	2.4991	65.182	3	2	Median	1.2339	1.1847	NaN	1	0	Median	0.9675	1.0466	NaN	1	0	Median	595410000	199620000	395790000	54712000	25819000	28893000	466620000	139860000	326760000	46815000	19275000	27540000	27263000	14667000	12596000	34807	1304	32938	214230;214231;214232;214233;214234;214235	288880;288881;288882;288883;288884;288885;288886;288887;288888	288888			9	
LVEIAQVPK	1	Unmodified	995.60153	0.60153174	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		55.241	44.482	2	0.014066	25736	160513_QHF_FH_JSI11Kac_4	53.166	35.781			0.84112	0.90722	14.45	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8529	1.0048	NaN	1	0	Median	0.8295	0.8191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11779000	5996700	5782200	0	0	0	3873600	2080000	1793600	7905300	3916700	3988700	0	0	0	34808	2772	32939	214236;214237	288889;288890	288890			2	
LVEIDNGK	1	Unmodified	886.476	0.47599688	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.38	4					1	3			1	3	2	2	23.087	18.741	2	0.000795	11192	160513_QHF_FH_JSI10Kac_4	111.82	58.261			1.1702	1.1102	64.873	8	5	Median	1.3163	1.1045	NaN	1	0	Median	2.4316	2.9052	97.928	3	3	Plateau	1.5045	1.464	85.613	2	1	Median	1.1813	1.2691	18.179	2	1	Median	6977500000	2730400000	4247100000	1920900000	678680000	1242200000	1969800000	763060000	1206700000	1370300000	508410000	861890000	1716500000	780290000	936250000	34809	791	32940	214238;214239;214240;214241;214242;214243;214244;214245	288891;288892;288893;288894;288895;288896;288897;288898;288899;288900	288894			10	
LVEKGETDLIQK	2	Acetyl (K)	1413.7715	0.7715102	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	57.811	48.637	2	0.028815	25763	160513_QHF_FH_JSI12Kac_3	53.683	37.051			4.5258	4.9196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5258	4.9196	NaN	1	1	Median	3941100	721350	3219800	0	0	0	0	0	0	0	0	0	3941100	721350	3219800	34810	1544	32941	214246	288901	288901			1	
LVEKPSPLTLAPHDFANIK	2	Unmodified	2089.1572	0.15717593	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.411	68.114	4	0.02227	58869	160511_QHF_FH_JSI12i_3	32.981	26.844			0.77624	0.80922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77624	0.80922	NaN	1	1	Median	40471000	22146000	18325000	0	0	0	0	0	0	0	0	0	40471000	22146000	18325000	34811	1804	32942	214247	288902	288902			1	
LVELLMHNDYK	1	Unmodified	1373.7013	0.70132214	439;1767;254	O15131;P52294;O60684	KPNA5;KPNA1;KPNA6	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	2	1	3	3	54.389	53.252	2;3	2.0379E-05	45837	160511_QHF_FH_JSI12i_2	132.78	96.835			4.8882	5.3586	218.65	5	5	Median	9.4393	7.9634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13.038	13.337	NaN	1	1	Median	0.16481	0.18005	202.94	3	3	Median	335520000	103650000	231870000	53327000	5336000	47991000	0	0	0	97524000	6604700	90919000	184670000	91712000	92961000	34812	254;1767;439	32943	214248;214249;214250;214251;214252;214253;214254;214255;214256	288903;288904;288905;288906;288907;288908;288909;288910;288911;288912	288905			10	
LVELTQK	1	Unmodified	829.49092	0.49091866	1544	P42704;Q9NP80	LRPPRC;PNPLA8	Leucine-rich PPR motif-containing protein, mitochondrial;Calcium-independent phospholipase A2-gamma	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								1	4	2	2	23.117	22.407	2	0.012541	19090	160511_QHF_FH_JSI9i_2	73.616	29.085			1.6909	2.0578	117.33	9	9	Median	4.6294	3.9317	NaN	1	1	Median	0.77378	0.937	142.78	4	4	Median	1.2683	1.3034	106.62	2	2	Median	0.91901	1.0463	141.2	2	2	Median	2961400000	1339400000	1622000000	320960000	90482000	230480000	1111600000	542670000	568920000	891320000	371420000	519900000	637550000	334800000	302750000	34813	1544	32944	214257;214258;214259;214260;214261;214262;214263;214264;214265	288913;288914;288915;288916;288917;288918;288919;288920;288921	288917			9	
LVELWGGK	1	Unmodified	900.5069	0.50690308	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	54.393	53.432	2	0.0049824	46167	160511_QHF_FH_JSI11i_2	67.032	33.294			1.1156	1.1424	13.79	4	0	Median	1.2396	1.0325	NaN	1	0	Median	1.0039	1.2575	NaN	1	0	Median	1.3588	1.357	NaN	1	0	Median	0.92075	1.0379	NaN	1	0	Median	438320000	221930000	216390000	63304000	31373000	31931000	107120000	61168000	45953000	154770000	70809000	83965000	113120000	58577000	54542000	34814	344	32945	214266;214267;214268;214269	288922	288922			1	
LVEPGSPAEK	1	Unmodified	1025.5393	0.53932542	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.42	4	5				3	1			3	2	4	4	22.008	18.855	2	2.3114E-05	15954	160511_QHF_FH_JSI11i_1	98.033	63.225			1.0624	0.99629	34.062	11	3	Median	1.0749	0.88822	0.80568	2	1	Median	0.78022	0.92195	15.135	2	0	Median	1.067	1.0472	32.062	4	1	Median	1.2549	1.3293	47.434	3	1	Median	2961500000	1516700000	1444900000	662490000	358090000	304390000	751490000	430290000	321210000	744980000	360420000	384560000	802580000	367870000	434710000	34815	198	32946	214270;214271;214272;214273;214274;214275;214276;214277;214278;214279;214280;214281;214282	288923;288924;288925;288926;288927;288928;288929;288930;288931;288932;288933;288934;288935;288936;288937;288938;288939;288940;288941	288923			19	
LVEPVGRPSILK	1	Unmodified	1306.7973	0.79727144	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				48.826	47.217	3	0.032423	38687	160511_QHF_FH_JSI9i_3	35.737	29.735			0.53273	0.43384	NaN	1	1	Median	0.53273	0.43384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66162000	46471000	19691000	66162000	46471000	19691000	0	0	0	0	0	0	0	0	0	34816	1628	32947	214283	288942	288942			1	
LVEQAFRK	1	Unmodified	989.56581	0.56581494	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	17.63	17.111	2;3	0.0061779	14076	160511_QHF_FH_JSI10i_3	79.116	51.591			0.83409	0.88238	40.128	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59296	0.66439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1733	1.1719	NaN	1	1	Median	65184000	36112000	29072000	0	0	0	22435000	15213000	7221400	0	0	0	42749000	20899000	21850000	34817	2134	32948	214284;214285	288943;288944	288943			2	
LVEQHGSDIWWTLPPEQLLPK	1	Unmodified	2485.3005	0.3005457	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.04	100.92	3	6.0109E-08	88756	160511_QHF_FH_JSI9i_2	92.289	87.938			1.098	1.1241	9.8777	4	0	Median	1.3292	1.132	NaN	1	0	Median	0.80181	0.97186	NaN	1	0	Median	1.212	1.2339	NaN	1	0	Median	0.99479	1.1163	NaN	1	0	Median	716050000	347080000	368970000	117840000	59045000	58792000	159020000	89375000	69647000	322710000	140480000	182230000	116480000	58175000	58303000	34818	4983	32949	214286;214287;214288;214289	288945;288946;288947;288948;288949	288946			5	
LVEQLDIEETEQSK	1	Unmodified	1659.8203	0.82031088	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	51.371	50.873	2;3	1.5977E-14	45708	160511_QHF_FH_JSI10i_1	182.08	182.08			1.0734	1.1218	22.887	6	0	Median	NaN	NaN	NaN	0	0	Median	0.91182	1.047	8.4925	2	0	Median	1.3089	1.2532	14.394	2	0	Median	1.2833	1.3122	42.075	2	0	Median	366980000	159600000	207380000	0	0	0	137500000	67229000	70266000	101470000	43523000	57952000	128010000	48852000	79163000	34819	3844	32950	214290;214291;214292;214293;214294;214295	288950;288951;288952;288953;288954;288955;288956	288954			6	
LVEQYTK	1	Unmodified	879.47018	0.47018322	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	15.3	14.886	2	0.0029635	12318	160511_QHF_FH_JSI11i_1	107.59	58.235			1.0828	1.1125	7.8773	5	0	Median	1.5263	1.2245	NaN	1	0	Median	0.82886	0.9849	NaN	1	0	Median	1.1066	1.0938	3.0247	2	0	Median	1.0725	1.1125	NaN	1	0	Median	1689000000	783840000	905140000	242720000	93754000	148970000	445430000	271180000	174260000	510880000	216140000	294750000	489940000	202770000	287170000	34820	2676	32951	214296;214297;214298;214299;214300	288957;288958;288959;288960;288961;288962	288958			6	
LVESANEKAER	1	Acetyl (K)	1286.6466	0.64664404	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	24.162	16.779	2	0.015343	10637	160513_QHF_FH_JSI11Kac_3	53.683	34.588			0.87824	1.0039	13.681	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81553	0.96664	NaN	1	0	Median	1.2768	1.2698	NaN	1	0	Median	1.0152	1.0876	NaN	1	0	Median	24159000	12858000	11302000	0	0	0	9088100	5436500	3651600	6438900	2847200	3591700	8632300	4573900	4058400	34821	190	32952	214301;214302;214303	288963;288964;288965	288963	102		3	
LVESDAEAEAVREVYER	0	Unmodified	1963.9487	0.9486993	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	58.534	58.273	3	0.017591	50116	160511_QHF_FH_JSI12i_3	34.909	18.603			1.3447	1.3231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3447	1.3231	NaN	1	1	Median	30497000	9953000	20544000	0	0	0	0	0	0	0	0	0	30497000	9953000	20544000	34822	4566	32953	214304	288966	288966			1	
LVESDSDINANK	1	Unmodified	1303.6256	0.62557424	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	20.998	20.617	2	0.00041704	17825	160511_QHF_FH_JSI10i_1	87.806	64.038			0.4403	0.47753	43.494	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5545	0.64949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34962	0.3511	NaN	1	1	Median	33983000	24335000	9648200	0	0	0	16697000	13116000	3580500	0	0	0	17286000	11219000	6067800	34823	3643	32954	214305;214306	288967;288968	288968			2	
LVESLPQEIK	1	Unmodified	1154.6547	0.65468953	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	5.95	4	5	1			3	3	1		3	5	4	5	54.538	48.957	2	2.2123E-17	26807	160513_QHF_FH_JSI10Kac_4	166.16	132.9			0.97163	0.9108	27.446	12	3	Median	1.1107	0.90821	3.5475	2	1	Median	0.84893	1.0083	42.296	4	1	Median	0.99756	0.97434	1.6288	2	0	Median	0.78953	0.84947	30.007	4	1	Median	3781700000	1898900000	1882800000	756140000	335650000	420490000	1177200000	680290000	496930000	1027200000	548040000	479140000	821120000	334920000	486200000	34824	1786	32955	214307;214308;214309;214310;214311;214312;214313;214314;214315;214316;214317;214318;214319;214320;214321;214322;214323	288969;288970;288971;288972;288973;288974;288975;288976;288977;288978;288979;288980;288981;288982;288983;288984;288985;288986;288987;288988	288974			20	
LVETLEDQELK	1	Unmodified	1315.6871	0.68711187	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.614	45.936	2	1.2092E-09	41512	160511_QHF_FH_JSI11i_1	135.55	90.391			0.77816	0.75013	18.749	4	1	Median	0.79846	0.65254	NaN	1	1	Median	0.87215	1.0166	NaN	1	0	Median	0.75838	0.73957	NaN	1	0	Median	0.74122	0.76084	NaN	1	0	Median	496190000	271470000	224720000	129590000	73874000	55714000	139590000	67502000	72087000	126470000	67277000	59196000	100540000	62816000	37724000	34825	662	32956	214324;214325;214326;214327	288989;288990;288991;288992;288993	288990			5	
LVEVDSGR	0	Unmodified	873.4556	0.45559579	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	1	2					1			1	1	1	1	16.661	14.102	2	0.0018455	11694	160511_QHF_FH_JSI9i_1	96.492	51.8			0.8172	0.8888	19.482	4	2	Median	0.76764	0.6326	NaN	1	1	Median	0.70095	0.84034	NaN	1	0	Median	0.95261	0.94006	NaN	1	1	Median	0.86996	0.97086	NaN	1	0	Median	1056500000	604020000	452510000	772090000	444650000	327440000	152170000	93435000	58732000	24607000	11885000	12722000	107670000	54050000	53619000	34826	1180	32957	214328;214329;214330;214331	288994;288995;288996;288997	288996			4	
LVEVIEEVNK	1	Unmodified	1170.6496	0.64960415	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	50.184	49.641	2	0.00040496	45169	160511_QHF_FH_JSI12i_1	89.247	57.958			5.4355	6.0702	18.306	2	2	Median	NaN	NaN	NaN	0	0	Median	4.3709	5.3332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.7595	6.909	NaN	1	1	Median	123240000	29478000	93760000	0	0	0	66104000	17009000	49094000	0	0	0	57135000	12469000	44666000	34827	8	32958	214332;214333	288998;288999	288998			2	
LVEVIKTPMTSQK	2	Acetyl (K)	1514.8378	0.83781563	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		70.877	59.917	2	0.016993	32865	160513_QHF_FH_JSI11Kac_4	60.434	32.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	965120	965120	0	0	0	0	0	0	0	965120	965120	0	0	0	0	34828	2770	32959	214334	289000	289000	2672		1	
LVEVNGENVEK	1	Unmodified	1228.6299	0.62993134	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	28.698	28.108	2	0.00011011	25203	160511_QHF_FH_JSI12i_1	85.533	46.511			0.91323	0.94423	9.3266	4	0	Median	1.1223	0.901	NaN	1	0	Median	0.89712	1.0439	NaN	1	0	Median	0.86604	0.84763	NaN	1	0	Median	0.92962	0.98955	NaN	1	0	Median	1311500000	722530000	588950000	256860000	141930000	114930000	372250000	208590000	163670000	347050000	186260000	160800000	335310000	185760000	149550000	34829	198	32960	214335;214336;214337;214338;214339	289001;289002;289003	289002			3	
LVEVPNDGGPLGIHVVPFSAR	0	Unmodified	2172.1691	0.1691376	3739	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	88.755	88.57	3	8.5858E-06	79096	160511_QHF_FH_JSI11i_3	64.295	47.274			0.91233	0.86325	18.49	3	2	Median	1.2585	1.1112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91233	0.86325	NaN	1	0	Median	0.74797	0.77507	NaN	1	1	Median	116570000	63064000	53506000	16498000	6669200	9829200	0	0	0	60635000	33705000	26930000	39436000	22690000	16746000	34830	3739	32961	214340;214341;214342	289004;289005;289006;289007;289008;289009	289006			6	
LVEYDIDEVVYDEDSPYQNIK	1	Unmodified	2545.1748	0.17479565	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	87.901	87.573	3	1.482E-22	79468	160511_QHF_FH_JSI10i_1	159.8	151.51			0.88445	0.9283	11.442	4	0	Median	NaN	NaN	NaN	0	0	Median	0.792	0.9377	NaN	1	0	Median	1.002	0.96874	19.302	2	0	Median	0.88218	0.91899	NaN	1	0	Median	250000000	127160000	122850000	0	0	0	112360000	59741000	52615000	74196000	31057000	43139000	63453000	36359000	27094000	34831	1784	32962	214343;214344;214345;214346	289010;289011;289012;289013;289014	289013			3	
LVFCLLELLSR	0	Unmodified	1361.7741	0.77409316	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	98.227	88.8	2	6.7941E-05	48708	160513_QHF_FH_JSI12Kac_6	96.342	62.42			0.84783	0.84752	64.01	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56044	0.53899	NaN	1	0	Median	1.2826	1.3327	NaN	1	0	Median	221280000	115900000	105380000	0	0	0	0	0	0	106380000	58997000	47387000	114890000	56905000	57988000	34832	3736	32963	214347;214348	289015;289016;289017	289016			3	
LVFDEYLK	1	Unmodified	1025.5433	0.54334816	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							2	2	2	1	69.535	68.622	2	0.00067397	58883	160511_QHF_FH_JSI12i_2	100.45	73.849			1.0725	1.0897	41.819	7	3	Median	1.256	1.0382	48.031	2	1	Median	1.2485	1.4653	47.917	2	1	Median	0.80207	0.79933	43.821	2	1	Median	1.1825	1.2762	NaN	1	0	Median	997450000	446950000	550500000	285920000	111730000	174190000	101530000	48010000	53522000	370770000	171040000	199720000	239240000	116170000	123070000	34833	891	32964	214349;214350;214351;214352;214353;214354;214355	289018;289019;289020;289021;289022;289023;289024;289025;289026;289027;289028	289019			11	
LVFDGLRK	1	Unmodified	946.56	0.56000128	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	3	1	41.356	40.369	2;3	0.00028815	35463	160511_QHF_FH_JSI11i_3	104.21	56.466			1.0945	1.0237	56.864	8	2	Median	1.0718	0.86369	10.566	2	0	Median	0.98062	1.1171	68.793	3	2	Median	1.1161	1.0419	14.837	2	0	Median	3.0988	3.1533	NaN	1	0	Median	4112600000	2079800000	2032700000	1604100000	823070000	781080000	919580000	521100000	398470000	1178900000	553200000	625720000	409940000	182460000	227480000	34834	1085	32965	214356;214357;214358;214359;214360;214361;214362;214363;214364	289029;289030;289031;289032;289033;289034;289035;289036;289037;289038;289039;289040;289041;289042;289043;289044;289045	289032			17	
LVFFEVSPVSFHQVSEVLSEEK	1	Unmodified	2535.2897	0.28970624	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.55	101.56	3	6.2856E-58	88234	160511_QHF_FH_JSI12i_3	213.45	184.07			0.84449	0.83082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84449	0.83082	NaN	1	0	Median	343080000	170430000	172650000	0	0	0	0	0	0	0	0	0	343080000	170430000	172650000	34835	3536	32966	214365	289046	289046			1	
LVFGFLNGR	0	Unmodified	1021.5709	0.57090032	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.2			3					1	4	3	2	2	1	80.075	74.293	2	2.0218E-05	37989	160513_QHF_FH_JSI12Kac_6	128.48	92.089			1.0244	0.94153	16.016	8	0	Median	1.3063	1.1043	26.627	3	0	Median	0.80934	0.94153	1.1213	2	0	Median	1.0683	0.99209	8.6663	2	0	Median	0.86326	0.92426	NaN	1	0	Median	2336900000	1258100000	1078800000	499720000	267290000	232430000	1200100000	687780000	512350000	476100000	211420000	264680000	160950000	91646000	69307000	34836	771	32967	214366;214367;214368;214369;214370;214371;214372;214373	289047;289048;289049;289050;289051;289052;289053;289054;289055	289054			9	
LVFHTQLAHGSPTGR	0	Unmodified	1619.8532	0.85322319	217	O14908	GIPC1	PDZ domain-containing protein GIPC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	1	3	43.473	34.245	3;4	0.00021567	18969	160513_QHF_FH_JSI10Kac_6	70.197	62.653			1.2641	1.4468	24.183	6	4	Median	NaN	NaN	NaN	0	0	Median	0.97337	1.1647	15.682	2	0	Median	1.8133	1.7297	NaN	1	1	Median	1.4753	1.6085	27.634	3	3	Median	106160000	52304000	53853000	0	0	0	59334000	31051000	28283000	18316000	8717800	9598600	28506000	12535000	15972000	34837	217	32968	214374;214375;214376;214377;214378;214379	289056;289057;289058;289059;289060;289061;289062	289062			7	
LVFLACCVAPTNPR	0	Unmodified	1616.8167	0.81670303	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15.8	0.433								1	3		3	1		77.094	68.395	2	5.2475E-30	37071	160513_QHF_FH_JSI11Kac_6	161.67	147.51			1.1634	1.1451	26.865	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0693	1.2711	37.024	2	2	Median	1.1634	1.1451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67077000	29391000	37687000	0	0	0	33800000	13439000	20362000	33277000	15952000	17325000	0	0	0	34838	2545	32969	214380;214381;214382;214383	289063;289064;289065;289066	289063			4	
LVFLGEQSVGK	1	Unmodified	1175.655	0.65502388	1175	P20340;Q9NRW1	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.61	4	4					1	5		2	4	3	5	64.195	59.202	2	6.4424E-05	51250	160511_QHF_FH_JSI11i_2	93.111	41.115			0.88698	0.93166	35.272	14	3	Median	1.1117	0.93166	1.4372	2	0	Median	0.79323	0.94931	25.744	4	1	Median	0.87224	0.85819	18.568	3	0	Median	0.90198	1.0078	54.64	5	2	Median	1424300000	700040000	724240000	224570000	90911000	133660000	339080000	178280000	160800000	431110000	232870000	198230000	429520000	197980000	231550000	34839	1175	32970	214384;214385;214386;214387;214388;214389;214390;214391;214392;214393;214394;214395;214396;214397	289067;289068;289069;289070;289071;289072;289073;289074;289075;289076;289077;289078;289079;289080;289081;289082;289083;289084	289078			18	
LVFLGLDNAGK	1	Unmodified	1145.6445	0.64445919	4941;5716	Q9NR31;Q9Y6B6	SAR1A;SAR1B	GTP-binding protein SAR1a;GTP-binding protein SAR1b	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.73	3	4					2	4	2	2	4	4	5	76.403	70.991	2	2.0947E-29	63046	160511_QHF_FH_JSI12i_2	183.65	144.86			0.9583	1.0255	13.482	14	2	Median	1.233	1.0505	8.4164	2	0	Median	0.93148	1.1457	9.0775	4	0	Median	1.1327	1.2771	10.924	4	0	Linear	0.86905	0.93717	12.808	4	2	Median	2206100000	804400000	1401700000	336900000	108980000	227920000	533500000	217520000	315980000	755070000	254140000	500940000	580650000	223770000	356880000	34840	4941;5716	32971	214398;214399;214400;214401;214402;214403;214404;214405;214406;214407;214408;214409;214410;214411;214412	289085;289086;289087;289088;289089;289090;289091;289092;289093;289094;289095;289096;289097;289098;289099;289100;289101;289102;289103;289104;289105;289106;289107;289108;289109;289110;289111;289112;289113;289114;289115	289090			31	
LVFPQDLLEK	1	Unmodified	1200.6754	0.67542497	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.7	4	4	3					1		2	3	5	2	85.653	84.14	2	2.2159E-07	73577	160511_QHF_FH_JSI12i_2	116.05	95.149			0.67808	0.68922	85.997	11	7	Median	0.38601	0.32341	27.74	2	2	Median	0.3437	0.41554	78.803	3	3	Median	0.82315	0.81359	134.1	4	2	Median	0.68039	0.71684	5.5566	2	0	Median	1260200000	827920000	432250000	229140000	147690000	81442000	325370000	231750000	93620000	436310000	297680000	138630000	269350000	150790000	118560000	34841	3712	32972	214413;214414;214415;214416;214417;214418;214419;214420;214421;214422;214423;214424	289116;289117;289118;289119;289120;289121;289122;289123;289124;289125;289126;289127;289128;289129;289130;289131;289132;289133;289134;289135;289136;289137	289122			22	
LVFSNVNLK	1	Unmodified	1032.5968	0.59678072	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		3	2	2	2	59.551	57.586	2	2.8988E-06	50821	160511_QHF_FH_JSI11i_3	124.83	53.922			1.0753	1.0495	17.392	9	0	Median	1.238	1.0495	16.271	3	0	Median	1.0116	1.2135	8.2086	2	0	Median	0.90677	0.89129	16.224	2	0	Median	0.89573	0.96451	16.978	2	0	Median	4300400000	2006500000	2293900000	532550000	229070000	303480000	705740000	352790000	352960000	1447500000	681450000	766060000	1614600000	743230000	871390000	34842	2734	32973	214425;214426;214427;214428;214429;214430;214431;214432;214433	289138;289139;289140;289141;289142;289143;289144;289145;289146;289147;289148;289149;289150;289151;289152;289153	289138			16	
LVFVHSAEGNEFWSALLEK	1	Unmodified	2175.1001	0.10005498	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	3	2	96.431	92.698	3	1.062E-118	87701	160511_QHF_FH_JSI12i_3	278.07	264.64			0.87082	1.0703	29.691	9	2	Median	2.2845	1.9859	NaN	1	1	Median	0.8617	1.0703	15.339	3	0	Median	0.87082	0.84254	30.386	3	1	Median	0.9516	0.9852	18.494	2	0	Median	2941100000	1534100000	1407000000	254020000	69176000	184850000	774070000	425600000	348470000	808420000	449460000	358960000	1104600000	589890000	514700000	34843	871	32974	214434;214435;214436;214437;214438;214439;214440;214441;214442;214443	289154;289155;289156;289157;289158;289159;289160;289161;289162;289163;289164;289165;289166;289167	289163			14	
LVFVPLLLLCNIKPR	1	Unmodified	1794.0954	0.095367716	4318	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		97.912	88.5	3	0.00097849	50583	160513_QHF_FH_JSI11Kac_6	82.069	66.676			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34844	4318	32975	214444	289168	289168			1	
LVGAIVYYDGQHNDAR	0	Unmodified	1789.8747	0.87474649	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.77		8	5					1	11	7	7	7	4	52.741	47.049	2;3	8.1846E-63	25415	160513_QHF_FH_JSI11Kac_6	206.58	193.23			1.1121	1.0498	13.599	17	2	Median	1.0931	0.91912	9.3786	4	0	Median	0.78289	0.92272	8.0055	5	1	Median	1.2039	1.1238	6.7034	4	0	Median	1.1435	1.2099	7.7879	4	1	Median	1766900000	851510000	915350000	379120000	186180000	192940000	328630000	178790000	149850000	623900000	284880000	339020000	435200000	201650000	233540000	34845	1558	32976	214445;214446;214447;214448;214449;214450;214451;214452;214453;214454;214455;214456;214457;214458;214459;214460;214461;214462;214463;214464;214465;214466;214467;214468;214469	289169;289170;289171;289172;289173;289174;289175;289176;289177;289178;289179;289180;289181;289182;289183;289184;289185;289186;289187;289188;289189;289190;289191;289192;289193;289194;289195;289196;289197;289198;289199;289200;289201;289202;289203;289204;289205;289206	289177			38	
LVGDVDFEGVR	0	Unmodified	1204.6088	0.60880197	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		57.077	56.067	2	0.0032257	50871	160511_QHF_FH_JSI11i_1	58.955	42.179			0.5585	0.49043	NaN	1	1	Median	0.5585	0.49043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131720000	100170000	31548000	131720000	100170000	31548000	0	0	0	0	0	0	0	0	0	34846	1047	32977	214470;214471	289207;289208	289207			2	
LVGEGGHLFLYYTVENSR	0	Unmodified	2053.0269	0.026890038	4756	Q9H6W3	NO66	Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	78.538	69.095	3	6.3215E-05	36468	160513_QHF_FH_JSI12Kac_6	74.793	64.735			0.80623	0.86787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80623	0.86787	NaN	1	0	Median	21206000	11261000	9944800	0	0	0	0	0	0	0	0	0	21206000	11261000	9944800	34847	4756	32978	214472	289209	289209			1	
LVGEIKEEEK	2	Unmodified	1172.6289	0.62886871	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	18.086	17.771	2;3	0.02001	14370	160511_QHF_FH_JSI11i_2	78.655	48.091			1.9514	2.1527	151.86	4	3	Median	NaN	NaN	NaN	0	0	Median	2.9391	3.5838	NaN	1	1	Median	1.3544	1.3484	248.6	2	2	Median	1.2956	1.2931	NaN	1	0	Median	223500000	107860000	115640000	0	0	0	22854000	5129900	17724000	96200000	56558000	39643000	104450000	46175000	58276000	34848	5548	32979	214473;214474;214475;214476	289210;289211;289212;289213	289210			4	
LVGEIMQETGTR	0	Unmodified	1332.6708	0.6707503	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	42.311	41.374	2	6.6896E-05	35404	160511_QHF_FH_JSI11i_2	106.4	87.085			0.67318	0.76357	131.73	6	6	Median	NaN	NaN	NaN	0	0	Median	0.74327	0.9073	192.16	2	2	Median	0.67183	0.6751	168.62	2	2	Median	0.67318	0.76357	143.25	2	2	Median	962910000	584790000	378120000	0	0	0	257580000	170020000	87551000	408390000	249970000	158420000	296940000	164790000	132150000	34849	2147	32980	214477;214478;214479;214480;214481;214482	289214;289215;289216;289217;289218;289219;289220;289221;289222	289217			9	
LVGFISAIPANIHIYDTEK	1	Unmodified	2100.1255	0.12554145	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.47		4	14						5	5	6	6	6	94.176	92.396	2;3;4	1.2089E-42	43088	160513_QHF_FH_JSI9Kac_6	180.28	150.35			1.0146	1.0185	41.466	22	10	Median	1.1584	0.97309	13.93	4	1	Median	0.94256	1.1043	56.249	6	3	Median	1.012	1.0002	42.279	6	3	Median	0.86762	0.90231	43.162	6	3	Median	2891300000	1422000000	1469300000	463660000	225840000	237820000	585020000	274810000	310210000	1028600000	503940000	524660000	814060000	417430000	396640000	34850	1351	32981	214483;214484;214485;214486;214487;214488;214489;214490;214491;214492;214493;214494;214495;214496;214497;214498;214499;214500;214501;214502;214503;214504;214505	289223;289224;289225;289226;289227;289228;289229;289230;289231;289232;289233;289234;289235;289236;289237;289238;289239;289240;289241;289242;289243;289244;289245;289246;289247;289248;289249;289250;289251;289252;289253;289254;289255;289256;289257;289258;289259;289260;289261;289262;289263;289264;289265;289266;289267;289268	289256			46	
LVGFISAIPANIHIYDTEKK	2	Unmodified	2228.2205	0.22050447	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			88.412	87.303	4	0.0030539	72928	160511_QHF_FH_JSI10i_3	43.946	35.466			0.75485	0.86952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75485	0.86952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11107000	5666300	5441000	0	0	0	11107000	5666300	5441000	0	0	0	0	0	0	34851	1351	32982	214506	289269;289270	289269			2	
LVGGTTPGK	1	Unmodified	828.47052	0.47051757	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.8	3	1	1								1	1	3	11.038	10.769	2	0.004278	8236	160511_QHF_FH_JSI12i_2	57.047	9.1318			0.97943	0.99516	16.026	5	0	Median	NaN	NaN	NaN	0	0	Median	0.97943	1.1574	NaN	1	0	Median	1.0254	0.99516	NaN	1	0	Median	1.0509	1.1579	19.594	3	0	Plateau	1489700000	800150000	689580000	0	0	0	506580000	302190000	204400000	374760000	195750000	179010000	608390000	302210000	306180000	34852	1800	32983	214507;214508;214509;214510;214511	289271;289272;289273;289274	289272			4	
LVGIFENQER	0	Unmodified	1203.6248	0.62478638	746	O95989	NUDT3	Diphosphoinositol polyphosphate phosphohydrolase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.224	48.986	2	0.0063876	42079	160511_QHF_FH_JSI12i_3	64.265	48.383			0.72845	0.73151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72845	0.73151	NaN	1	0	Median	46156000	24438000	21718000	0	0	0	0	0	0	0	0	0	46156000	24438000	21718000	34853	746	32984	214512	289275	289275			1	
LVGIFENQERK	1	Unmodified	1331.7197	0.7197494	746	O95989	NUDT3	Diphosphoinositol polyphosphate phosphohydrolase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				39.511	37.999	3	0.00047023	31077	160511_QHF_FH_JSI9i_3	49.448	34.769			0.96133	0.79026	NaN	1	0	Median	0.96133	0.79026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45253000	18638000	26615000	45253000	18638000	26615000	0	0	0	0	0	0	0	0	0	34854	746	32985	214513	289276	289276			1	
LVGIHELFLFNFYPFLQR	0	Unmodified	2252.2146	0.21463123	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.958	90.53	3	2.8154E-17	53745	160513_QHF_FH_JSI10Kac_6	137.52	128.81			0.96179	0.9775	1.5196	2	0	Median	1.1433	0.98806	NaN	1	0	Median	0.80907	0.96705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	966500000	510940000	455570000	363890000	173730000	190160000	602620000	337210000	265410000	0	0	0	0	0	0	34855	5051	32986	214514;214515	289277;289278;289279	289279			3	
LVGIHQNGGFTK	1	Unmodified	1269.683	0.68296996	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	29.311	28.616	2;3	2.8993E-11	24414	160511_QHF_FH_JSI11i_3	118.87	106.28			0.99476	1.0389	20.589	8	1	Median	1.2916	1.0418	10.718	2	0	Median	0.86988	1	15.715	2	1	Median	1.2848	1.2109	43.438	2	0	Median	0.99095	1.0747	17.666	2	0	Median	1280600000	605070000	675570000	277250000	124790000	152450000	244970000	128900000	116070000	325780000	126630000	199140000	432640000	224740000	207910000	34856	2958	32987	214516;214517;214518;214519;214520;214521;214522;214523	289280;289281;289282;289283;289284;289285;289286;289287;289288;289289;289290;289291;289292;289293	289280			14	
LVGIISSR	0	Unmodified	843.5178	0.51780212	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.12		4	7					1	4	5	4	3	4	38.371	34.81	2	0.00035431	30190	160511_QHF_FH_JSI10i_3	111.04	18.569			0.94465	0.96579	19.06	16	1	Median	1.1196	0.95405	18.094	5	0	Median	0.90684	1.0696	9.206	4	0	Median	0.97599	0.99553	7.5919	3	0	Median	0.97345	0.93699	27.685	4	1	Linear	2414000000	1234400000	1179600000	848850000	388230000	460610000	756560000	412850000	343720000	364630000	195780000	168850000	443940000	237490000	206440000	34857	1015	32988	214524;214525;214526;214527;214528;214529;214530;214531;214532;214533;214534;214535;214536;214537;214538;214539	289294;289295;289296;289297;289298;289299;289300;289301;289302;289303;289304	289296			11	
LVGLKFMQASEDLLK	2	Acetyl (K)	1732.9433	0.94334333	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		94.716	85.324	2	1.2888E-15	48214	160513_QHF_FH_JSI11Kac_6	181.98	144.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67182000	67182000	0	0	0	0	0	0	0	67182000	67182000	0	0	0	0	34858	1079	32989	214540	289305	289305	920;921		1	
LVGLPVHLLFLR	0	Unmodified	1375.8704	0.8703768	2923	Q5SQH8	C6orf136	Uncharacterized protein C6orf136	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	91.654	83.326	3	2.8794E-16	46528	160513_QHF_FH_JSI11Kac_6	136.96	129.83			0.79728	0.83788	23.872	4	1	Median	1.2053	1.0442	NaN	1	0	Median	0.64164	0.75182	NaN	1	0	Median	0.99066	0.9338	NaN	1	0	Median	0.56847	0.60936	NaN	1	1	Median	699860000	389950000	309900000	244280000	110260000	134010000	239100000	151900000	87198000	152300000	82813000	69484000	64185000	44977000	19208000	34859	2923	32990	214541;214542;214543;214544;214545	289306;289307;289308;289309;289310;289311;289312;289313	289306			8	
LVGLQNTYMGYLDYRK	1	Unmodified	1932.9768	0.97676872	4655	Q9H1C3	GLT8D2	Glycosyltransferase 8 domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			77.78	76.381	3	0.013049	64012	160511_QHF_FH_JSI10i_3	36.193	26.405			0.83715	0.98889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83715	0.98889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15275000	10462000	4813500	0	0	0	15275000	10462000	4813500	0	0	0	0	0	0	34860	4655	32991	214546	289314	289314			1	
LVGLTGTREEVDQVAR	0	Unmodified	1741.9323	0.93226137	578	O75880	SCO1	Protein SCO1 homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							3	3	2	1	48.776	47.891	2;3	1.1813E-05	42245	160511_QHF_FH_JSI10i_2	103.83	83.407			1.0587	0.99923	24.097	9	0	Median	1.0587	0.89881	18.251	3	0	Median	0.72616	0.90189	10.422	3	0	Median	1.4427	1.4384	15.059	2	0	Median	1.1659	1.2155	NaN	1	0	Median	1476900000	746820000	730100000	415180000	163930000	251250000	675900000	430400000	245500000	336700000	127440000	209260000	49139000	25051000	24088000	34861	578	32992	214547;214548;214549;214550;214551;214552;214553;214554;214555	289315;289316;289317;289318;289319;289320;289321;289322;289323;289324;289325;289326	289324			12	
LVGLVYILPAAYFWR	0	Unmodified	1780.0076	0.0075985659	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									4	1		2	1	99.379	90.023	2;3	1.9039E-10	51641	160513_QHF_FH_JSI11Kac_6	142.19	98.003			1.1222	1.1206	26.953	4	0	Median	1.6723	1.4462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1035	1.0522	33.834	2	0	Median	0.89813	0.9396	NaN	1	0	Median	211450000	104030000	107420000	45997000	18815000	27183000	0	0	0	132610000	65824000	66788000	32844000	19396000	13448000	34862	3215	32993	214556;214557;214558;214559	289327;289328	289327			2	
LVGMPAK	1	Unmodified	714.40983	0.40983157	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.51	1	4	1					3	1	2	2	3	3	27.822	23.722	2	0.03446	20059	160511_QHF_FH_JSI11i_2	50.12	27.083			1.129	1.1792	54.366	10	1	Median	0.99771	0.84817	17.676	2	0	Median	0.88642	1.0487	32.543	2	0	Median	1.2323	1.2605	98.471	3	1	Median	1.242	1.3777	13.833	3	0	Median	9023200000	4879000000	4144300000	1492600000	684770000	807870000	1723900000	975070000	748840000	3316700000	1914000000	1402700000	2490000000	1305100000	1184900000	34863	1480	32994	214560;214561;214562;214563;214564;214565;214566;214567;214568;214569	289329;289330;289331;289332;289333	289332			5	
LVGMPAK	1	Oxidation (M)	730.40475	0.40474619	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	15	0								2				1	1	12.914	3.5585	2	0.055749	5202	160513_QHF_FH_JSI11Kac_5	46.351	20.242			0.86545	0.91105	14.203	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82118	0.824	NaN	1	0	Median	0.9121	1.0073	NaN	1	0	Median	13321000	6687200	6634100	0	0	0	0	0	0	8105200	3874200	4230900	5216100	2812900	2403200	34864	1480	32994	214570;214571	289334	289334			1	
LVGMSVLLAK	1	Unmodified	1029.6256	0.62563801	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.38			4					1	3	2	3	2	1	76.571	71.876	2	0.00023003	37466	160513_QHF_FH_JSI9Kac_6	93.267	65.78			0.98493	0.97286	30.824	8	1	Median	1.3382	1.1303	25.741	2	0	Median	0.74742	0.86863	11.432	3	0	Plateau	1.6934	1.5931	33.819	2	1	Median	0.82199	0.83341	NaN	1	0	Median	489570000	215670000	273900000	105670000	37584000	68082000	123100000	64610000	58486000	92592000	36080000	56512000	168220000	77400000	90820000	34865	3342	32995	214572;214573;214574;214575;214576;214577;214578;214579	289335;289336;289337;289338;289339;289340;289341	289338			7	
LVGNMHGDETVSR	0	Unmodified	1413.6671	0.6670619	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	17.767	17.53	3	7.0982E-05	14608	160511_QHF_FH_JSI11i_3	63.037	54.524			0.72615	0.72664	16.928	3	0	Median	NaN	NaN	NaN	0	0	Median	0.55891	0.67675	NaN	1	0	Median	0.9908	0.93404	NaN	1	0	Median	0.72615	0.72664	NaN	1	0	Median	209020000	109980000	99038000	0	0	0	57494000	33341000	24153000	59790000	28885000	30905000	91738000	47758000	43980000	34866	594	32996	214580;214581;214582	289342;289343;289344;289345;289346	289343			5	
LVGNMHGDETVSR	0	Oxidation (M)	1429.662	0.66197652	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	17.453	17.491	3	0.04577	14103	160511_QHF_FH_JSI12i_3	31.827	26.343			2.8108	3.0204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8108	3.0204	NaN	1	1	Median	19496000	4139000	15357000	0	0	0	0	0	0	0	0	0	19496000	4139000	15357000	34867	594	32996	214583	289347	289347			1	
LVGPEEALSPGEAR	0	Unmodified	1423.7307	0.73070802	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	3	2	48.632	47.796	2	6.8552E-25	43284	160511_QHF_FH_JSI11i_1	158.05	137.18			1.0183	1.0135	9.1643	6	2	Median	1.1533	0.99984	NaN	1	0	Median	0.74781	0.903	NaN	1	1	Median	1.0344	1.0278	0.068152	2	1	Median	0.96547	1.0603	15.502	2	0	Median	813970000	404590000	409390000	78940000	39054000	39887000	57173000	35141000	22032000	374190000	172980000	201210000	303670000	157410000	146260000	34868	430	32997	214584;214585;214586;214587;214588;214589;214590	289348;289349;289350;289351;289352;289353;289354;289355;289356;289357;289358;289359	289349			12	
LVGPEGFVVTEAGFGADIGMEK	1	Unmodified	2222.0929	0.092920692	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	100.99	100.88	3	2.0955E-18	91454	160511_QHF_FH_JSI12i_1	145.9	130.64			0.92042	0.95986	33.663	6	1	Median	1.2704	1.0879	NaN	1	0	Median	0.77091	0.92658	NaN	1	0	Median	1.1054	1.082	13.352	2	0	Median	0.60975	0.65797	49.813	2	1	Median	598600000	314440000	284160000	89089000	35894000	53194000	126660000	75667000	50995000	201330000	102160000	99170000	181510000	100710000	80797000	34869	1004	32998	214591;214592;214593;214594;214595;214596	289360;289361;289362;289363;289364;289365;289366;289367;289368;289369;289370	289364			11	
LVGPEVR	0	Unmodified	768.44939	0.4493882	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	21.485	20.703	2	0.016301	16971	160511_QHF_FH_JSI11i_2	63.287	35.033			1.3253	1.3428	11.478	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88114	1.0799	NaN	1	0	Median	1.3253	1.3428	NaN	1	0	Median	1.1385	1.2819	NaN	1	0	Median	463430000	220160000	243270000	0	0	0	135750000	75804000	59950000	177380000	82722000	94654000	150290000	61632000	88663000	34870	2194	32999	214597;214598;214599	289371	289371			1	
LVGQGASAVLLDLPNSGGEAQAK	1	Unmodified	2194.1594	0.15936077	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.701	8	11	4							5	5	6	7	78.203	77.659	2;3	5.7752E-213	69330	160511_QHF_FH_JSI11i_3	324.25	299.9			0.92631	0.95091	12.79	20	6	Median	1.1076	0.93966	15.575	4	1	Median	0.89022	1.0594	8.077	4	1	Median	0.94371	0.93261	11.973	6	2	Median	0.93813	0.96459	9.6213	6	2	Median	4494900000	2248200000	2246700000	576160000	256090000	320070000	1009400000	539240000	470170000	1356700000	687400000	669340000	1552600000	765480000	787120000	34871	4304	33000	214600;214601;214602;214603;214604;214605;214606;214607;214608;214609;214610;214611;214612;214613;214614;214615;214616;214617;214618;214619;214620;214621;214622	289372;289373;289374;289375;289376;289377;289378;289379;289380;289381;289382;289383;289384;289385;289386;289387;289388;289389;289390;289391;289392;289393;289394;289395;289396;289397;289398;289399;289400;289401;289402;289403;289404;289405;289406;289407;289408;289409;289410;289411;289412;289413;289414;289415;289416;289417;289418;289419;289420;289421;289422;289423;289424;289425;289426;289427	289372			56	
LVGQQYLHDALGEFIK	1	Unmodified	1829.9676	0.96758424	5342	Q9UJF2	RASAL2	Ras GTPase-activating protein nGAP	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	95.823	95.831	3	0.00041392	83066	160511_QHF_FH_JSI12i_3	59.513	43.629			0.84577	0.8987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84577	0.8987	NaN	1	0	Median	18770000	12280000	6489900	0	0	0	0	0	0	0	0	0	18770000	12280000	6489900	34872	5342	33001	214623;214624	289428;289429	289428			1	
LVGQSIIAYLQK	1	Unmodified	1331.7813	0.78128702	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	4	3	3	3	84.478	79.114	2;3	4.0089E-53	69780	160511_QHF_FH_JSI9i_3	216.45	158.49			1.0673	0.97434	16.705	13	0	Median	1.1462	0.94082	11.682	4	0	Median	1.012	1.2027	14.867	3	0	Plateau	1.2078	1.157	18.99	3	0	Median	1.0673	1.1221	21.181	3	0	Median	3854300000	1656300000	2198000000	1834000000	694560000	1139500000	1061400000	530880000	530470000	754950000	339640000	415310000	203970000	91221000	112750000	34873	1805	33002	214625;214626;214627;214628;214629;214630;214631;214632;214633;214634;214635;214636;214637	289430;289431;289432;289433;289434;289435;289436;289437;289438;289439;289440;289441;289442;289443;289444;289445;289446;289447;289448;289449;289450;289451;289452;289453;289454;289455;289456	289444			27	
LVGSQEELASWGHEYVR	0	Unmodified	1958.9486	0.94863972	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.59		10	5						4	5	5	3	6	65.419	62.469	2;3	4.5853E-44	34188	160513_QHF_FH_JSI10Kac_6	185.33	163.49			1.0069	0.99315	32.977	15	5	Median	1.3174	1.1313	43.367	4	2	Median	0.86496	1.0179	28.624	4	1	Median	0.82514	0.77929	15.468	3	0	Plateau	1.1256	1.1623	37.362	4	2	Median	2457000000	1310500000	1146500000	444040000	228440000	215600000	645160000	393490000	251670000	328420000	175500000	152920000	1039400000	513080000	526340000	34874	2370	33003	214638;214639;214640;214641;214642;214643;214644;214645;214646;214647;214648;214649;214650;214651;214652;214653;214654;214655;214656	289457;289458;289459;289460;289461;289462;289463;289464;289465;289466;289467;289468;289469;289470;289471;289472;289473;289474;289475;289476;289477	289477			21	
LVGSVNLFSDENVPR	0	Unmodified	1644.8471	0.84713476	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.593	3	9	2							3	4	4	3	72.968	72.332	2;3	1.4554E-21	62486	160511_QHF_FH_JSI12i_2	178.1	165.52			0.8968	0.9937	13.668	14	5	Plateau	1.236	1.0675	6.9187	3	2	Median	0.88791	1.0688	4.9003	4	0	Median	1.1763	1.1429	23.516	4	2	Median	0.87179	0.9509	3.3836	3	1	Plateau	541040000	273960000	267080000	108900000	50506000	58399000	148680000	74377000	74305000	145500000	71662000	73836000	137950000	77414000	60541000	34875	4361	33004	214657;214658;214659;214660;214661;214662;214663;214664;214665;214666;214667;214668;214669;214670	289478;289479;289480;289481;289482;289483;289484;289485;289486;289487;289488;289489;289490;289491;289492;289493;289494;289495;289496;289497;289498	289481			21	
LVGTPGAELLK	1	Unmodified	1096.6492	0.64921022	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	56.001	55.159	2	0.0068429	49924	160511_QHF_FH_JSI11i_1	61.48	46.22			0.10602	0.11908	115.1	5	5	Median	0.1389	0.11908	NaN	1	1	Median	0.10602	0.12895	NaN	1	1	Median	0.04864	0.048722	79.944	2	2	Median	0.612	0.68417	NaN	1	1	Median	2072000000	1901500000	170450000	459290000	424690000	34596000	249470000	219090000	30375000	1273100000	1200300000	72809000	90109000	57434000	32675000	34876	2736	33005	214671;214672;214673;214674;214675	289499;289500;289501;289502;289503	289499			5	
LVGTPNPSTPLPNTVPQFIAR	0	Unmodified	2218.211	0.21100241	3928	Q93062	RBPMS	RNA-binding protein with multiple splicing	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		86.395	86.395	3	0.047174	77129	160511_QHF_FH_JSI11i_3	22.636	7.3823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5513000	0	5513000	0	0	0	0	0	0	5513000	0	5513000	0	0	0	34877	3928	33006	214676	289504	289504			1	
LVGVFHTEYGALNR	0	Unmodified	1574.8205	0.82052608	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	4	4	2	1	59.319	55.552	2	4.2213E-15	30460	160513_QHF_FH_JSI10Kac_6	134.68	99.984			0.90769	0.91056	30.593	6	6	Median	1.1224	0.94043	NaN	1	1	Median	0.63083	0.74212	42.861	3	3	Plateau	0.82722	0.78454	16.501	2	2	Median	NaN	NaN	NaN	0	0	Median	109180000	54409000	54772000	33807000	12369000	21439000	48346000	25824000	22522000	27028000	16216000	10812000	0	0	0	34878	5278	33007	214677;214678;214679;214680;214681;214682;214683;214684;214685;214686;214687	289505;289506;289507;289508;289509;289510;289511;289512;289513;289514;289515	289515			11	
LVGVLVHSGQASGGHYYSYIIQR	0	Unmodified	2503.2972	0.29719166	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	72.504	63.742	3;4	2.2413E-211	33917	160513_QHF_FH_JSI9Kac_6	307.34	266.99			0.77124	1.0381	15.823	8	0	Linear	0.92555	0.78689	26.752	2	0	Median	0.80121	0.94711	9.7438	2	0	Median	0.78177	0.73758	0.73696	2	0	Median	0.68166	0.71735	1.8614	2	0	Median	6726800000	3829300000	2897500000	1506000000	731140000	774870000	2924600000	1815200000	1109400000	1171400000	653250000	518100000	1124900000	629690000	495200000	34879	3921	33008	214688;214689;214690;214691;214692;214693;214694;214695	289516;289517;289518;289519;289520;289521;289522;289523;289524;289525;289526;289527;289528;289529;289530;289531;289532	289523			17	
LVGVVPGPVGEPADSDK	1	Unmodified	1634.8516	0.85155143	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	57.369	56.715	2	6.7589E-05	50294	160511_QHF_FH_JSI9i_1	83.182	64.437			0.94982	0.9631	24.894	5	2	Median	0.7792	0.63996	NaN	1	0	Median	0.74535	0.893	NaN	1	0	Median	0.9865	0.9631	NaN	1	0	Median	1.0878	1.1142	20.019	2	2	Median	430800000	221500000	209300000	100520000	50985000	49530000	82154000	45341000	36813000	90499000	43517000	46982000	157630000	81659000	75973000	34880	4819	33009	214696;214697;214698;214699;214700	289533;289534;289535;289536;289537;289538;289539;289540	289540			8	
LVGVVPGPVGEPADSDKR	1	Unmodified	1790.9527	0.95266246	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.423	48.423	3	2.605E-05	42754	160511_QHF_FH_JSI11i_3	75.239	65.709			1.1154	1.0378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1154	1.0378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67711000	37108000	30604000	0	0	0	0	0	0	67711000	37108000	30604000	0	0	0	34881	4819	33010	214701	289541;289542	289541			2	
LVGYITNYSR	0	Unmodified	1184.619	0.61897272	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		11.7	6.13			1						2		1	2		49.555	43.447	2	3.6014E-05	23885	160513_QHF_FH_JSI10Kac_6	104.2	79.306			0.72666	0.74861	18.126	3	2	Median	NaN	NaN	NaN	0	0	Median	0.63582	0.74861	NaN	1	1	Median	0.85422	0.8133	24.725	2	1	Median	NaN	NaN	NaN	0	0	Median	89442000	50104000	39338000	0	0	0	23608000	13579000	10029000	65834000	36525000	29309000	0	0	0	34882	3770	33011	214702;214703;214704	289543;289544;289545	289545			3	
LVGYLDR	0	Unmodified	834.45995	0.45995289	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	33.379	32.448	2	0.010529	27536	160511_QHF_FH_JSI11i_2	74.439	29.828			0.85004	0.91336	7.8978	4	0	Median	0.98039	0.81811	NaN	1	0	Median	0.81014	0.99166	NaN	1	0	Median	0.87277	0.91112	NaN	1	0	Median	0.82791	0.91562	NaN	1	0	Median	2331400000	1216500000	1114900000	430110000	198340000	231770000	589810000	335970000	253830000	748740000	350430000	398310000	562720000	331710000	231010000	34883	873	33012	214705;214706;214707;214708	289546;289547	289546			2	
LVGYSTFSHR	0	Unmodified	1165.588	0.58800695	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			39.516	30.681	3	0.0004834	17179	160513_QHF_FH_JSI10Kac_6	72.652	38.908			1.073	1.0399	2.8948	2	0	Median	1.2935	1.0614	NaN	1	0	Median	0.89001	1.0189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18931000	9140700	9790400	6517200	2566600	3950600	12414000	6574100	5839800	0	0	0	0	0	0	34884	4314	33013	214709;214710	289548;289549;289550	289550			3	
LVHAIIGSLK	1	Unmodified	1049.6597	0.65971533	5402	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			44.968	43.39	3	0.0022898	35491	160511_QHF_FH_JSI9i_3	57.532	47.751			1.9847	1.9302	9.3229	2	2	Median	2.1891	1.807	NaN	1	1	Median	1.7995	2.0617	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88298000	41224000	47074000	41214000	16559000	24655000	47084000	24665000	22419000	0	0	0	0	0	0	34885	5402	33014	214711;214712	289551;289552	289552			2	
LVHANFGTK	1	Unmodified	985.53451	0.53451481	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.27		7	14						5	7	7	7	5	18.729	16.829	2;3	2.8064E-08	9905	160513_QHF_FH_JSI11Kac_6	129.38	114.72			0.88964	0.82383	92.381	26	21	Median	0.98043	0.83795	96.854	7	6	Median	0.64654	0.74095	60.969	7	5	Median	0.8345	0.80995	115.61	7	6	Median	1.0229	1.1079	111.98	5	4	Median	25207000000	12927000000	12280000000	5822400000	2361000000	3461300000	3400800000	1614800000	1786000000	6421400000	3716000000	2705400000	9562400000	5234800000	4327600000	34886	793	33015	214713;214714;214715;214716;214717;214718;214719;214720;214721;214722;214723;214724;214725;214726;214727;214728;214729;214730;214731;214732;214733;214734;214735;214736;214737;214738	289553;289554;289555;289556;289557;289558;289559;289560;289561;289562;289563;289564;289565;289566;289567;289568;289569;289570;289571;289572;289573;289574;289575;289576;289577;289578;289579;289580;289581;289582	289563			30	
LVHANFGTKK	2	Unmodified	1113.6295	0.62947783	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							3	4	4	2	12.09	11.699	2;3;4	0.00020837	9034	160511_QHF_FH_JSI11i_3	69.346	59.913			0.86595	0.85756	49.559	12	6	Median	0.88536	0.70866	29.02	3	1	Median	0.78759	0.89501	23.584	3	1	Median	0.90635	0.86028	48.366	4	2	Median	1.3772	1.3837	115.88	2	2	Median	1985800000	969700000	1016100000	540090000	248380000	291700000	363750000	203160000	160590000	465730000	209920000	255810000	616250000	308240000	308020000	34887	793	33016	214739;214740;214741;214742;214743;214744;214745;214746;214747;214748;214749;214750;214751	289583;289584;289585;289586;289587;289588;289589;289590;289591;289592;289593;289594;289595;289596;289597	289584			14	
LVHEGPLTWR	0	Unmodified	1206.6509	0.65094155	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			44.769	43.196	3	0.00035383	35986	160511_QHF_FH_JSI10i_3	65.5	51.382			0.96096	0.93706	8.9754	2	0	Median	1.2182	0.99846	NaN	1	0	Median	0.75804	0.87944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119970000	57319000	62650000	66857000	25613000	41244000	53112000	31706000	21406000	0	0	0	0	0	0	34888	3900	33017	214752;214753	289598;289599;289600	289598			2	
LVHFLLLK	1	Unmodified	981.63752	0.63752332	1563	P43360	MAGEA6	Melanoma-associated antigen 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	70.231	66.794	3	0.00049516	35688	160513_QHF_FH_JSI11Kac_6	88.942	84.586			0.9394	0.8475	59.272	12	8	Median	0.9615	0.8084	61.613	3	2	Median	0.66264	0.79314	62.841	3	2	Median	0.92664	0.88848	76.049	3	2	Median	0.95234	1.0213	75.621	3	2	Median	1440600000	788540000	652010000	307100000	155600000	151500000	527540000	295390000	232150000	334990000	186500000	148490000	270920000	151050000	119870000	34889	1563	33018	214754;214755;214756;214757;214758;214759;214760;214761;214762;214763;214764;214765	289601;289602;289603;289604;289605;289606;289607;289608;289609;289610;289611;289612;289613;289614;289615;289616;289617;289618;289619;289620	289605			20	
LVHGYIVFYSAK	1	Unmodified	1395.7551	0.75507227	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	66.205	57.124	2;3	9.3333E-19	31246	160513_QHF_FH_JSI10Kac_6	147.75	91.191			0.84502	0.83107	19.808	9	0	Median	0.84502	0.73091	21.919	3	0	Median	0.79832	0.95859	26.359	2	0	Median	0.91979	0.88116	14.713	2	0	Median	0.85447	0.9025	11.662	2	0	Median	1862500000	887180000	975310000	461060000	190630000	270430000	658650000	328600000	330050000	443230000	231390000	211840000	299550000	136570000	162990000	34890	4974	33019	214766;214767;214768;214769;214770;214771;214772;214773;214774	289621;289622;289623;289624;289625;289626;289627;289628;289629;289630;289631;289632;289633;289634;289635;289636;289637	289637			17	
LVHHILQDMYK	1	Unmodified	1395.7333	0.73329097	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							5	2	2	3	41.991	41.222	2;3	7.072E-05	35095	160511_QHF_FH_JSI11i_3	66.56	63.432			0.75278	0.69432	82.402	9	5	Median	0.31837	0.26477	146.9	3	2	Median	0.49373	0.5766	NaN	1	1	Median	0.74025	0.6857	1.7668	2	0	Median	1.1209	1.1225	35.666	3	2	Median	492480000	291100000	201380000	196200000	140610000	55588000	25230000	18110000	7119900	98931000	53766000	45164000	172120000	78614000	93506000	34891	5107	33020	214775;214776;214777;214778;214779;214780;214781;214782;214783;214784;214785;214786	289638;289639;289640;289641;289642;289643;289644;289645;289646;289647;289648;289649;289650;289651;289652	289640			14	
LVHIIGALR	0	Unmodified	990.63383	0.63383493	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	4	2	2	1	50.717	45.011	3	0.00018279	23931	160513_QHF_FH_JSI9Kac_6	74.301	40.298			0.8674	0.82633	81.553	9	5	Median	0.99033	0.8284	93.865	4	4	Median	0.59937	0.70989	8.4715	2	0	Median	2.0543	1.929	119.89	2	1	Median	0.99382	1.0747	NaN	1	0	Median	431680000	230220000	201460000	163700000	91229000	72472000	181070000	100120000	80955000	64231000	28879000	35352000	22676000	9994800	12681000	34892	4423	33021	214787;214788;214789;214790;214791;214792;214793;214794;214795	289653;289654;289655;289656;289657;289658;289659;289660;289661;289662;289663;289664;289665	289661			13	
LVHLPSCTVFSNFPVIK	1	Unmodified	1957.0495	0.049539735	5659	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	92.661	92.321	3	0.00065568	79818	160511_QHF_FH_JSI12i_3	62.104	38.966			0.78609	0.7269	11.783	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.78609	0.91753	NaN	1	0	Median	0.77748	0.7269	NaN	1	0	Median	0.78964	0.8426	NaN	1	1	Median	115420000	61671000	53747000	0	0	0	18043000	9269600	8773600	49906000	27492000	22414000	47470000	24910000	22560000	34893	5659	33022	214796;214797;214798	289666;289667;289668	289668			2	
LVHLWSSDSHQPLWSR	0	Unmodified	1946.9751	0.97512924	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			69.67	62.002	3;4	3.5899E-33	34052	160513_QHF_FH_JSI10Kac_6	166.35	154.71			1.0766	1.2628	15.308	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0766	1.2628	15.308	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150110000	64330000	85779000	0	0	0	150110000	64330000	85779000	0	0	0	0	0	0	34894	737	33023	214799;214800	289669;289670;289671	289670			3	
LVHNLNFK	1	Unmodified	983.55525	0.55525025	1749	P51688	SGSH	N-sulphoglucosamine sulphohydrolase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.087	27.049	3	0.00087123	22552	160511_QHF_FH_JSI12i_3	77.058	60.904			1.298	1.3046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.298	1.3046	NaN	1	1	Median	62347000	38949000	23398000	0	0	0	0	0	0	0	0	0	62347000	38949000	23398000	34895	1749	33024	214801	289672	289672			1	
LVHPDFFSQR	0	Unmodified	1244.6302	0.63020611	3424	Q8IWL3	HSCB	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		49.076	48.019	2;3	0.0037375	40259	160511_QHF_FH_JSI10i_3	58.676	30.278			1.2626	1.1467	5.1128	3	0	Plateau	1.2831	1.0382	NaN	1	0	Median	0.93881	1.1044	NaN	1	0	Median	1.2626	1.1491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129400000	67432000	61971000	36504000	16344000	20160000	44157000	25045000	19112000	48742000	26042000	22699000	0	0	0	34896	3424	33025	214802;214803;214804;214805;214806	289673;289674;289675	289674			2	
LVHPGVAEVVFVK	1	Unmodified	1392.8129	0.8129215	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	4	3	3	62.425	60.487	2;3	4.1585E-11	53504	160511_QHF_FH_JSI11i_3	125.28	109.74			1.1047	1.0848	21.559	13	0	Median	1.1237	0.93632	21.52	3	0	Plateau	1.0395	1.1963	31.828	4	0	Median	0.97159	0.93358	8.4662	3	0	Plateau	1.1578	1.1891	18.122	3	0	Median	1062400000	496480000	565910000	153160000	63586000	89575000	173050000	95767000	77286000	361850000	163650000	198210000	374320000	173480000	200840000	34897	4538	33026	214807;214808;214809;214810;214811;214812;214813;214814;214815;214816;214817;214818;214819	289676;289677;289678;289679;289680;289681;289682;289683;289684;289685;289686;289687;289688;289689	289677			12	
LVHPTDKYSNK	2	Acetyl (K)	1342.6881	0.68811492	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		28.57	19.044	3	0.041392	12030	160513_QHF_FH_JSI11Kac_5	35.523	25.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2781500	2781500	0	0	0	0	0	0	0	2781500	2781500	0	0	0	0	34898	3229	33027	214820	289690	289690			1	
LVHQNSASDDAEASMISK	1	Unmodified	1901.8789	0.87890517	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	29.181	28.788	3	3.6043E-07	24208	160511_QHF_FH_JSI12i_3	108.71	92.407			0.63789	0.66402	47.081	5	5	Median	NaN	NaN	NaN	0	0	Median	0.72186	0.87155	38.462	2	2	Median	0.63789	0.60994	NaN	1	1	Median	0.83205	0.83383	80.443	2	2	Median	232040000	139450000	92595000	0	0	0	44751000	28859000	15892000	81061000	53024000	28036000	106230000	57565000	48666000	34899	2453	33028	214821;214822;214823;214824;214825;214826;214827	289691;289692;289693;289694;289695;289696;289697	289696			7	
LVHQNSASDDAEASMISK	1	Oxidation (M)	1917.8738	0.87381979	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	18.812	18.838	3	0.0016018	15256	160511_QHF_FH_JSI12i_3	46.159	26.606			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34900	2453	33028	214828	289698	289698		1959	1	
LVHSLFESIMSTQESSNPNNVLK	1	Oxidation (M)	2589.2745	0.27446689	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		74.364	73.399	3	3.0945E-08	60517	160511_QHF_FH_JSI9i_3	79.467	72.673			0.9463	0.88466	22.105	3	1	Plateau	0.92207	0.73258	NaN	1	0	Median	0.9463	1.0801	NaN	1	1	Median	1.1558	1.0683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130760000	59182000	71581000	51066000	27569000	23497000	35579000	16577000	19003000	44118000	15037000	29081000	0	0	0	34901	241	33029	214829;214830;214831	289699;289700;289701	289701		105	3	
LVHSLFESIMSTQESSNPNNVLK	1	Unmodified	2573.2796	0.27955226	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	2	3	3	1	87.577	85.958	3;4	7.0063E-60	77995	160511_QHF_FH_JSI11i_3	222.79	206.26			1.0836	1.0744	33.307	9	3	Median	1.3005	1.0652	39.525	2	0	Median	1.0836	1.3444	48.174	3	1	Median	1.1142	1.0744	21.113	3	1	Median	0.81304	0.83192	NaN	1	1	Median	1969800000	994090000	975730000	328270000	138600000	189680000	627160000	341210000	285950000	725130000	331830000	393300000	289240000	182440000	106810000	34902	241	33029	214832;214833;214834;214835;214836;214837;214838;214839;214840	289702;289703;289704;289705;289706;289707;289708;289709;289710;289711;289712;289713;289714;289715;289716;289717;289718;289719;289720;289721	289705			20	
LVHSYPYDWR	0	Unmodified	1334.6408	0.6407708	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.57	6.43			4						3	1		2	4	46.163	41.308	3	0.0001433	35212	160511_QHF_FH_JSI12i_3	55.649	47.999			1.3106	1.2332	13.411	6	1	Median	1.4497	1.1765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3106	1.2763	13.106	2	0	Median	1.1855	1.2926	18.473	3	1	Median	564880000	270100000	294790000	15452000	6829500	8622800	0	0	0	201110000	97550000	103560000	348320000	165720000	182610000	34903	4983	33030	214841;214842;214843;214844;214845;214846;214847	289722;289723;289724;289725;289726;289727;289728;289729;289730	289726			8	
LVHTNEVTVLLGDNWFAK	1	Unmodified	2055.0789	0.078925608	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.923	94.931	3	2.178E-05	82395	160511_QHF_FH_JSI12i_3	77.221	65.903			0.73499	0.73387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73499	0.73387	NaN	1	0	Median	54093000	24069000	30023000	0	0	0	0	0	0	0	0	0	54093000	24069000	30023000	34904	605	33031	214848	289731	289731			1	
LVIAGHLLR	0	Unmodified	990.63383	0.63383493	1093	P16219	ACADS	Short-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	59.141	49.837	3	0.00040267	27297	160513_QHF_FH_JSI10Kac_6	79.474	47.154			1.1298	1.1736	25.577	4	0	Median	1.6054	1.3919	NaN	1	0	Median	0.69162	0.81385	NaN	1	0	Median	1.3785	1.3583	NaN	1	0	Median	0.92598	1.014	NaN	1	0	Median	65854000	29976000	35878000	10463000	4206000	6257200	24774000	13729000	11044000	25263000	9006100	16257000	5354400	3034500	2320000	34905	1093	33032	214849;214850;214851;214852	289732;289733;289734;289735;289736	289735			5	
LVICPDEGFYK	1	Unmodified	1339.6482	0.64822394	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	65.353	64.759	2	8.8678E-05	57357	160511_QHF_FH_JSI10i_2	99.653	70.566			0.61624	0.74987	5.0782	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61624	0.74987	5.0782	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128750000	85918000	42830000	0	0	0	128750000	85918000	42830000	0	0	0	0	0	0	34906	1935	33033	214853;214854;214855;214856;214857;214858	289737;289738;289739;289740;289741;289742	289741			6	
LVIDEPAK	1	Unmodified	883.50148	0.50148335	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.61	4	4	1			1	3			3	3	3	4	35.904	32.354	2	0.00060547	29070	160511_QHF_FH_JSI10i_1	102.72	45.16			0.91584	0.98206	17.781	13	0	Median	1.1885	0.9949	14.364	3	0	Median	0.81267	0.9793	4.9878	3	0	Plateau	0.93355	0.9099	36.098	3	0	Median	0.94274	1.0569	8.9122	4	0	Median	10918000000	4720400000	6197600000	2639000000	976930000	1662100000	2924100000	1366400000	1557700000	2988400000	1226800000	1761600000	2366500000	1150300000	1216200000	34907	1758	33034	214859;214860;214861;214862;214863;214864;214865;214866;214867;214868;214869;214870;214871	289743;289744;289745;289746;289747;289748;289749;289750;289751;289752;289753;289754;289755;289756;289757;289758;289759;289760;289761;289762;289763;289764;289765;289766;289767;289768;289769;289770	289756			28	
LVIDEPAKEK	2	Acetyl (K)	1182.6496	0.64960415	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	51.292	41.981	2	0.00037779	23038	160513_QHF_FH_JSI11Kac_3	92.062	63.664			0.80069	0.85072	14.048	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84675	0.99912	NaN	1	0	Median	0.77298	0.75518	NaN	1	0	Median	0.80069	0.85072	NaN	1	0	Median	20510000	11196000	9314000	0	0	0	7616700	4162400	3454300	4064800	2047800	2017000	8828400	4985700	3842700	34908	1758	33035	214872;214873;214874	289771;289772;289773;289774	289771	1773		4	
LVIDQIDNGFFSPK	1	Unmodified	1591.8246	0.8246084	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	89.521	88.607	2	3.5669E-05	76566	160511_QHF_FH_JSI12i_2	118.28	74.971			0.07109	0.07943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.07109	0.07943	NaN	1	1	Median	84761000	77784000	6976900	0	0	0	0	0	0	0	0	0	84761000	77784000	6976900	34909	855	33036	214875	289775	289775			1	
LVIDVIR	0	Unmodified	826.52764	0.52763852	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		59.393	58.605	2	0.017974	50726	160511_QHF_FH_JSI11i_2	60.648	19.796			0.74299	0.64399	11.693	3	0	Median	0.74299	0.64399	NaN	1	0	Median	0.5263	0.63313	NaN	1	0	Median	0.76679	0.78147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	305890000	174530000	131360000	77813000	40298000	37516000	92498000	57852000	34646000	135580000	76379000	59202000	0	0	0	34910	2560	33037	214876;214877;214878	289776;289777;289778	289777			3	
LVIDVIRYEPPHIK	1	Unmodified	1690.977	0.97702672	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				72.893	71.416	4	0.0082772	58729	160511_QHF_FH_JSI9i_3	40.025	32.823			0.94979	0.78405	NaN	1	0	Median	0.94979	0.78405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18765000	6948500	11816000	18765000	6948500	11816000	0	0	0	0	0	0	0	0	0	34911	2560	33038	214879	289779	289779			1	
LVIDWHNYGYSIMGLVHGPNHPLVLLAK	1	Unmodified	3155.6743	0.67426654	4408	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			93.032	85.702	5	1.4315E-40	47708	160513_QHF_FH_JSI9Kac_6	149.44	132.43			0.89284	0.90541	19.97	2	0	Median	0.90023	0.78617	NaN	1	0	Median	0.8855	1.0427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	281850000	145530000	136320000	81610000	34230000	47380000	200240000	111290000	88941000	0	0	0	0	0	0	34912	4408	33039	214880;214881	289780;289781;289782;289783	289781			4	
LVIEEAER	0	Unmodified	957.51311	0.51311067	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.23	4	4	1				2	3		2	5	3	4	33.612	29.594	2	0.00045826	26681	160511_QHF_FH_JSI10i_1	107.59	18.224			0.91879	0.99229	10.178	14	1	Median	1.2182	1.0124	1.022	2	0	Median	0.83902	0.97961	11.213	5	1	Median	0.90621	0.90827	6.8032	3	0	Plateau	0.97478	1.0665	13.923	4	0	Median	7702500000	3852300000	3850200000	1210900000	528140000	682750000	2115100000	1094200000	1020900000	2168700000	1086400000	1082400000	2207700000	1143600000	1064100000	34913	1722	33040	214882;214883;214884;214885;214886;214887;214888;214889;214890;214891;214892;214893;214894;214895	289784;289785;289786;289787;289788;289789;289790;289791;289792;289793;289794;289795;289796;289797;289798;289799;289800;289801;289802;289803;289804;289805	289794			22	
LVIFNELSSAR	0	Unmodified	1247.6874	0.68738664	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.748	1	2	2								1	2	2	70.903	70.354	2	0.0012046	61170	160511_QHF_FH_JSI12i_3	65.347	45.56			1.02	1.1333	47.27	5	1	Median	NaN	NaN	NaN	0	0	Median	0.33965	0.4007	NaN	1	1	Median	1.1806	1.1188	19.489	2	0	Median	1.04	1.1354	0.26269	2	0	Median	459650000	245620000	214030000	0	0	0	17450000	13446000	4004400	97915000	41443000	56472000	344280000	190730000	153550000	34914	3508	33041	214896;214897;214898;214899;214900	289806;289807;289808;289809;289810	289810			5	
LVIFTNQMSIGR	0	Unmodified	1377.7439	0.74385566	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			77.993	70.646	2	0.00013805	39076	160513_QHF_FH_JSI10Kac_6	95.483	68.18			0.24246	0.24634	106.89	2	2	Median	0.13395	0.11569	NaN	1	1	Median	0.43885	0.52453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204730000	156730000	48003000	113680000	99134000	14550000	91044000	57591000	33453000	0	0	0	0	0	0	34915	4257	33042	214901;214902	289811;289812	289812			2	
LVIFWALNEGVSR	0	Unmodified	1502.8245	0.82454882	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				82.829	74.203	3	0.022197	40548	160513_QHF_FH_JSI9Kac_6	27.664	0			0.40633	0.34817	NaN	1	1	Median	0.40633	0.34817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54467000	40158000	14310000	54467000	40158000	14310000	0	0	0	0	0	0	0	0	0	34916	2554	33043	214903	289813	289813			1	
LVIGDHK	1	Unmodified	780.44939	0.4493882	105	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.69	1	4	2						4	3	2	3	3	16.238	13.147	2	0.0099713	10764	160511_QHF_FH_JSI11i_2	76.847	30.476			1.0614	1.0734	24.988	11	1	Median	1.4632	1.2325	25.594	3	1	Median	1.0298	1.2331	8.1244	2	0	Median	0.81921	0.8131	18.613	3	0	Plateau	1.0614	1.0734	27.338	3	0	Median	1789700000	910170000	879540000	352110000	146880000	205230000	253350000	116470000	136880000	343630000	184630000	159000000	840620000	462190000	378430000	34917	105	33044	214904;214905;214906;214907;214908;214909;214910;214911;214912;214913;214914	289814;289815;289816;289817;289818;289819;289820;289821;289822	289818			9	
LVIGDHKSTSHFR	1	Acetyl (K)	1537.8001	0.80012499	105	O00193	SMAP	Small acidic protein	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS		16	0									4	1	2	1		40.345	31.376	3;4	0.0012384	17437	160513_QHF_FH_JSI10Kac_6	57.267	46.914			0.95938	0.99781	58.387	4	1	Median	1.055	0.9611	NaN	1	0	Median	0.98576	1.1684	17.016	2	1	Median	0.3581	0.35142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53858000	30666000	23193000	3498900	1737200	1761700	29710000	14326000	15384000	20649000	14602000	6047100	0	0	0	34918	105	33045	214915;214916;214917;214918	289823;289824;289825;289826	289825	67		4	
LVIGQNGILSTPAVSCIIR	0	Unmodified	2010.1296	0.12958097	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			98.289	98.028	2;3	1.5262E-13	81122	160511_QHF_FH_JSI10i_3	150.21	127.74			0.6804	0.80036	17.021	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6804	0.80036	17.021	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20732000	12400000	8332100	0	0	0	20732000	12400000	8332100	0	0	0	0	0	0	34919	1460	33046	214919;214920	289827;289828;289829;289830	289828			4	
LVIGSLPAHLSPHMFGGFK	1	Oxidation (M)	2023.0713	0.07133781	3666	Q8NHG8	ZNRF2	E3 ubiquitin-protein ligase ZNRF2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	88.801	88.333	2;3	0.014429	78665	160511_QHF_FH_JSI11i_3	33.308	18.613			0.88192	0.84621	6.4175	5	0	Plateau	1.1143	0.95322	NaN	1	0	Median	0.79493	0.9634	NaN	1	0	Median	0.91318	0.85546	3.439	2	0	Median	0.82896	0.85767	NaN	1	0	Median	1674000000	892080000	781970000	8500300	4374100	4126200	5291100	3310100	1981000	1193800000	631450000	562320000	466490000	252940000	213540000	34920	3666	33047	214921;214922;214923;214924;214925	289831;289832	289831		2279	2	
LVIGSLPAHLSPHMFGGFK	1	Unmodified	2007.0764	0.076423188	3666	Q8NHG8	ZNRF2	E3 ubiquitin-protein ligase ZNRF2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	89.491	89.103	4	1.9184E-05	76766	160511_QHF_FH_JSI12i_3	70.942	65.489			0.81122	0.8111	24.058	3	0	Median	NaN	NaN	NaN	0	0	Median	0.51559	0.61709	NaN	1	0	Median	1.0441	0.99687	NaN	1	0	Median	0.81122	0.8111	NaN	1	0	Median	55123000	33466000	21657000	0	0	0	8023200	6497600	1525600	18957000	9659200	9298100	28142000	17309000	10833000	34921	3666	33047	214926;214927;214928	289833;289834;289835	289835			2	
LVIIEGDLER	0	Unmodified	1155.6499	0.6499385	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	60.757	60.01	2	0.0011006	52130	160511_QHF_FH_JSI11i_2	67.897	50.657			0.47132	0.51851	25.566	6	0	Median	0.40462	0.34627	NaN	1	0	Median	0.40677	0.48748	14.761	2	0	Median	0.58949	0.58285	22.578	2	0	Median	0.58572	0.65774	NaN	1	0	Median	727790000	472540000	255250000	120090000	85494000	34601000	188610000	128290000	60327000	270270000	166320000	103950000	148810000	92438000	56372000	34922	858	33048	214929;214930;214931;214932;214933;214934	289836;289837;289838;289839	289838			4	
LVIIEGDLERTEER	0	Unmodified	1670.8839	0.88391419	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	2	3	3	3	55.544	54.923	2;3	1.7673E-09	48667	160511_QHF_FH_JSI11i_3	180.97	50.028			0.88667	0.90804	9.9441	10	2	Median	1.0539	0.89311	19.261	2	1	Median	0.70231	0.87411	5.0376	2	1	Median	1.1061	1.0371	11.602	3	0	Median	0.87454	0.91027	1.7915	3	0	Median	2673200000	1385400000	1287800000	273900000	138910000	135000000	348490000	212080000	136410000	1022900000	508830000	514050000	1027900000	525570000	502340000	34923	858	33049	214935;214936;214937;214938;214939;214940;214941;214942;214943;214944;214945	289840;289841;289842;289843;289844;289845;289846;289847;289848;289849;289850;289851;289852;289853;289854;289855;289856	289842			17	
LVIIESDLERAEER	0	Unmodified	1670.8839	0.88391419	929	P09493	TPM1	Tropomyosin alpha-1 chain	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		59.854	59.368	2;3	0.016301	52738	160511_QHF_FH_JSI11i_3	84.658	24.14			0.79083	0.70552	16.908	2	2	Median	0.95171	0.79512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65716	0.62602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81964000	47902000	34062000	64028000	33783000	30245000	0	0	0	17936000	14119000	3817200	0	0	0	34924	929	33050	214946;214947	289857;289858	289857			2	
LVIITAGAR	0	Unmodified	912.57565	0.57565135	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	5.96	3	8	6	2	2	4	2	9	22	14	18	11	15	49.602	42.695	1;2	9.0422E-24	23290	160513_QHF_FH_JSI10Kac_3	181.49	63.477			0.98081	0.9998	16.787	52	8	Median	1.2031	1.0267	17.373	13	2	Median	0.85494	0.98309	22.127	15	3	Median	1.0363	1.0274	9.2442	11	1	Median	0.85918	0.92286	12.889	13	2	Median	92649000000	42115000000	50534000000	18886000000	7118500000	11768000000	35279000000	18681000000	16598000000	22696000000	9347100000	13349000000	15788000000	6968500000	8819500000	34925	761	33051	214948;214949;214950;214951;214952;214953;214954;214955;214956;214957;214958;214959;214960;214961;214962;214963;214964;214965;214966;214967;214968;214969;214970;214971;214972;214973;214974;214975;214976;214977;214978;214979;214980;214981;214982;214983;214984;214985;214986;214987;214988;214989;214990;214991;214992;214993;214994;214995;214996;214997;214998;214999;215000;215001;215002;215003;215004;215005	289859;289860;289861;289862;289863;289864;289865;289866;289867;289868;289869;289870;289871;289872;289873;289874;289875;289876;289877;289878;289879;289880;289881;289882;289883;289884;289885;289886;289887;289888;289889;289890;289891;289892;289893;289894;289895;289896;289897;289898;289899;289900;289901;289902;289903;289904;289905;289906;289907;289908;289909;289910;289911;289912;289913;289914;289915;289916;289917;289918;289919;289920;289921;289922;289923;289924;289925;289926;289927;289928;289929;289930;289931;289932;289933;289934;289935;289936;289937;289938;289939;289940;289941;289942;289943;289944;289945;289946;289947;289948;289949;289950;289951;289952;289953;289954;289955;289956;289957;289958;289959;289960;289961;289962;289963;289964;289965;289966;289967;289968;289969;289970;289971	289909			111	
LVIKNQQFHK	2	Acetyl (K)	1295.735	0.73500553	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		43.718	34.589	2	0.017058	18902	160513_QHF_FH_JSI11Kac_6	53.968	32.461			0.35167	0.33696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35167	0.33696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12383000	7294800	5088600	0	0	0	1708900	0	1708900	10674000	7294800	3379600	0	0	0	34926	2644	33052	215006;215007	289972;289973	289972	2607;2608		2	
LVILANNCPALR	0	Unmodified	1352.7598	0.75984008	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.17		3	6						4	2	4	3	4	63.844	61.427	2	3.3234E-34	33809	160513_QHF_FH_JSI10Kac_6	173.23	132.21			0.91196	1.0049	31.268	11	6	Median	1.5378	1.289	1.1754	2	1	Median	0.62046	0.75281	20.504	3	2	Plateau	0.79505	0.76389	13.899	3	0	Median	1.3122	1.3415	29.036	3	3	Median	1346100000	707260000	638810000	107380000	46487000	60893000	306910000	172280000	134630000	407310000	240000000	167310000	524480000	248490000	275980000	34927	2033	33053	215008;215009;215010;215011;215012;215013;215014;215015;215016;215017;215018;215019;215020	289974;289975;289976;289977;289978;289979;289980;289981;289982;289983;289984;289985;289986;289987;289988;289989;289990;289991	289991			18	
LVILANNCPALRK	1	Unmodified	1480.8548	0.85480309	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		55.022	50.734	3	2.1601E-06	27936	160513_QHF_FH_JSI10Kac_6	105.2	72.008			0.88122	1.0117	185.07	3	1	Plateau	0.046818	0.037453	NaN	1	1	Median	0.88122	1.0117	NaN	1	0	Median	0.83375	0.83679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	309340000	228420000	80918000	201460000	180880000	20582000	72437000	29969000	42467000	35441000	17573000	17868000	0	0	0	34928	2033	33054	215021;215022;215023;215024	289992;289993;289994;289995	289995			3	
LVILDEADAMTQDAQNALR	0	Unmodified	2086.0365	0.036468446	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	99.991	99.891	3	5.7909E-11	90725	160511_QHF_FH_JSI11i_1	103.13	86.732			0.98277	0.96473	20.352	4	2	Median	NaN	NaN	NaN	0	0	Median	0.70742	0.80558	NaN	1	0	Median	1.018	0.97996	25.39	2	2	Median	1.1101	1.1365	NaN	1	0	Median	111630000	51953000	59678000	0	0	0	25980000	15451000	10529000	52384000	20809000	31575000	33267000	15693000	17574000	34929	1505	33055	215025;215026;215027;215028	289996;289997;289998;289999;290000;290001	289997			6	
LVILDEADAMTQDAQNALRR	0	Unmodified	2242.1376	0.13757947	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	93.846	93.775	3	5.1168E-06	83502	160511_QHF_FH_JSI11i_3	78.021	68.975			1.0528	0.99828	3.1952	3	1	Plateau	1.2541	1.061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0528	0.99828	NaN	1	0	Median	0.95058	1.0122	NaN	1	0	Median	227400000	103910000	123480000	54290000	20843000	33447000	0	0	0	125710000	56443000	69263000	47402000	26628000	20774000	34930	1505	33056	215029;215030;215031	290002;290003;290004;290005	290002			4	
LVILDNYDLASEWAAK	1	Unmodified	1819.9356	0.93561541	3725	Q8TDQ7	GNPDA2	Glucosamine-6-phosphate isomerase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.581	98.406	2	0.00018299	86200	160511_QHF_FH_JSI11i_2	78.692	59.947			0.93858	0.93044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93858	0.93044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18250000	10254000	7996800	0	0	0	0	0	0	18250000	10254000	7996800	0	0	0	34931	3725	33057	215032	290006;290007	290006			2	
LVILEGELER	0	Unmodified	1169.6656	0.66558856	73;2069;886	CON__Q3SX28;P07951;P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	2	2		65.106	64.478	2	9.8207E-05	56110	160511_QHF_FH_JSI11i_2	114.89	69.176		+	0.88313	1.0699	21.006	5	4	Median	0.87162	0.74399	NaN	1	1	Median	0.73401	0.89694	24.94	2	2	Median	1.1391	1.1094	1.7706	2	1	Median	NaN	NaN	NaN	0	0	Median	1086900000	542480000	544420000	174380000	93160000	81216000	405930000	224260000	181670000	506590000	225050000	281540000	0	0	0	34932	73;886;2069	33058	215033;215034;215035;215036;215037	290008;290009;290010;290011;290012	290010			5	
LVILEGELERAEER	0	Unmodified	1654.889	0.88899957	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.88		5	6						2	2	4	3	4	65.42	63.703	2;3	1.9387E-23	56606	160511_QHF_FH_JSI11i_3	226.4	184.4			0.9744	0.95374	41.894	13	10	Median	1.3047	1.0953	42.1	2	2	Median	0.68958	0.83462	62.608	4	3	Median	1.061	0.99688	42.154	3	2	Median	0.82385	0.84083	31.327	4	3	Median	3137300000	1488500000	1648800000	466070000	200880000	265190000	582080000	346480000	235600000	1271100000	545920000	725190000	818010000	395200000	422810000	34933	2069	33059	215038;215039;215040;215041;215042;215043;215044;215045;215046;215047;215048;215049;215050	290013;290014;290015;290016;290017;290018;290019;290020;290021;290022;290023;290024;290025;290026;290027;290028;290029;290030	290018			18	
LVILEGELERAEERAEVSELK	1	Unmodified	2411.2908	0.29076888	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			2									1	1	80.817	80.704	4	0.012789	72200	160511_QHF_FH_JSI11i_3	34.689	20.075			1.1459	1.1208	54.887	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.788	1.6522	NaN	1	1	Median	0.73432	0.76025	NaN	1	0	Median	109730000	61967000	47765000	0	0	0	0	0	0	72368000	39394000	32974000	37364000	22573000	14791000	34934	2069	33060	215051;215052	290031;290032	290031			2	
LVILEGELERSEER	0	Unmodified	1670.8839	0.88391419	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							1	1	5	3	57.537	57.187	2;3	2.782E-05	50507	160511_QHF_FH_JSI10i_2	117.07	25.214		+	1.0241	1.0652	27.998	9	6	Median	1.0241	0.89212	NaN	1	0	Median	0.91387	1.1125	NaN	1	0	Median	1.1607	1.1391	30.48	4	3	Median	0.80313	0.84974	34.184	3	3	Median	1265600000	628250000	637340000	105180000	45781000	59397000	122770000	64105000	58662000	653470000	301640000	351830000	384170000	216720000	167450000	34935	73;886	33061	215053;215054;215055;215056;215057;215058;215059;215060;215061;215062	290033;290034;290035;290036;290037;290038;290039;290040;290041;290042;290043	290040			11	
LVINGNPITIFQER	0	Unmodified	1612.8937	0.89369102	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.95	3	7	12						4	6	6	8	6	90.203	88.369	2;3	9.4543E-72	41079	160513_QHF_FH_JSI12Kac_6	259.55	225.01			0.87456	0.92205	18.134	26	11	Median	1.1843	0.97422	23.601	6	0	Median	0.7975	0.96762	5.5799	6	3	Median	0.87608	0.84641	13.725	8	5	Median	0.95788	1.0426	22.23	6	3	Median	13720000000	7195000000	6525000000	2699500000	1119700000	1579800000	3274700000	1885200000	1389600000	4841600000	2600600000	2241100000	2904100000	1589600000	1314500000	34936	812	33062	215063;215064;215065;215066;215067;215068;215069;215070;215071;215072;215073;215074;215075;215076;215077;215078;215079;215080;215081;215082;215083;215084;215085;215086;215087;215088	290044;290045;290046;290047;290048;290049;290050;290051;290052;290053;290054;290055;290056;290057;290058;290059;290060;290061;290062;290063;290064;290065;290066;290067;290068;290069;290070;290071;290072;290073;290074;290075;290076;290077;290078;290079;290080;290081;290082;290083;290084;290085;290086	290086			43	
LVINGNPITIFQERDPSK	1	Unmodified	2040.1004	0.10038933	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.52	3	8	23						5	10	11	11	7	82.006	80.255	2;3;4	7.8189E-137	72953	160511_QHF_FH_JSI11i_3	331.39	308.51			0.89424	0.90217	19.644	37	12	Median	1.075	0.90226	24.535	10	3	Median	0.82479	0.93552	16.458	11	6	Median	0.86327	0.82092	16.869	10	2	Median	0.93723	0.97057	9.5835	6	1	Median	76786000000	39312000000	37474000000	25600000000	12426000000	13174000000	29527000000	15084000000	14443000000	16406000000	9206700000	7198900000	5253700000	2595500000	2658200000	34937	812	33063	215089;215090;215091;215092;215093;215094;215095;215096;215097;215098;215099;215100;215101;215102;215103;215104;215105;215106;215107;215108;215109;215110;215111;215112;215113;215114;215115;215116;215117;215118;215119;215120;215121;215122;215123;215124;215125;215126;215127	290087;290088;290089;290090;290091;290092;290093;290094;290095;290096;290097;290098;290099;290100;290101;290102;290103;290104;290105;290106;290107;290108;290109;290110;290111;290112;290113;290114;290115;290116;290117;290118;290119;290120;290121;290122;290123;290124;290125;290126;290127;290128;290129;290130;290131;290132;290133;290134;290135;290136;290137;290138;290139;290140;290141;290142;290143;290144;290145;290146;290147;290148;290149;290150;290151;290152;290153;290154;290155;290156;290157;290158;290159;290160;290161;290162;290163;290164;290165;290166;290167;290168;290169;290170;290171;290172;290173;290174;290175;290176;290177;290178;290179;290180;290181;290182;290183;290184;290185;290186;290187;290188;290189;290190;290191	290096			105	
LVINGNPITIFQERDPSKIK	2	Acetyl (K)	2323.29	0.28998102	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	84.57	75.19	3	0.0086279	40067	160513_QHF_FH_JSI12Kac_6	51.348	26.149			0.53865	0.54101	42.863	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42715	0.39955	NaN	1	0	Median	0.67926	0.73254	NaN	1	0	Median	87789000	55856000	31933000	0	0	0	0	0	0	62855000	41557000	21297000	24935000	14299000	10636000	34938	812	33064	215128;215129	290192;290193;290194	290193	452		3	
LVINSGNGAVEDR	0	Unmodified	1342.6841	0.68409218	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.55	6	5					2			3	3	5	2	34.053	31.593	2	8.3919E-07	28607	160511_QHF_FH_JSI12i_1	129.84	108.94			1.0266	0.9629	13.115	11	5	Median	1.1074	0.86021	6.4437	3	2	Plateau	0.80527	0.957	13.551	3	1	Median	1.0284	1.0139	10.274	3	2	Median	1.0119	1.1027	3.0281	2	0	Median	2105900000	1047100000	1058800000	595830000	285480000	310350000	473040000	251550000	221490000	676420000	328400000	348010000	360650000	181670000	178990000	34939	1089	33065	215130;215131;215132;215133;215134;215135;215136;215137;215138;215139;215140;215141;215142	290195;290196;290197;290198;290199;290200;290201;290202;290203;290204;290205;290206;290207;290208;290209;290210	290200			16	
LVINSGNGAVEDRKPSGLNGEASK	2	Unmodified	2411.2405	0.24046464	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			37.51	36.044	4	1.0346E-08	29257	160511_QHF_FH_JSI9i_3	75.646	63.165			0.94573	0.91975	12.671	2	0	Median	1.0532	0.84093	NaN	1	0	Median	0.84924	1.006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	253270000	127000000	126270000	158180000	79353000	78831000	95087000	47645000	47442000	0	0	0	0	0	0	34940	1089	33066	215143;215144	290211;290212;290213;290214	290213			4	
LVINTEEVFRPYAK	1	Unmodified	1677.909	0.90900673	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.88		4	6						1	3	2	3	3	71.53	70.105	2;3	4.7269E-11	62610	160511_QHF_FH_JSI11i_3	154.36	136.56			0.90272	0.96922	13.352	11	1	Median	1.0446	0.90011	18.104	3	1	Median	0.77372	0.93391	15.43	2	0	Median	1.1617	1.0786	7.0928	3	0	Median	0.80066	0.82739	9.4139	3	0	Plateau	5221300000	2867000000	2354200000	495840000	216660000	279180000	328180000	186760000	141420000	2296300000	1206800000	1089600000	2100900000	1256900000	844030000	34941	2094	33067	215145;215146;215147;215148;215149;215150;215151;215152;215153;215154;215155	290215;290216;290217;290218;290219;290220;290221;290222;290223;290224;290225;290226;290227;290228;290229;290230;290231;290232;290233;290234;290235;290236;290237;290238;290239;290240	290216			26	
LVIPLVVHSAQK	1	Unmodified	1302.8024	0.80235682	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	61.86	61.264	3	3.9927E-06	51478	160511_QHF_FH_JSI10i_3	94.191	84.003			1.0441	1.0696	17.334	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.66048	0.76182	NaN	1	1	Median	0.96687	0.91424	NaN	1	1	Median	1.0441	1.0773	NaN	1	1	Median	860700000	457660000	403040000	0	0	0	114550000	64501000	50050000	265190000	142010000	123170000	480960000	251140000	229820000	34942	2977	33068	215156;215157;215158;215159;215160;215161	290241;290242;290243;290244;290245;290246	290244			6	
LVIPSELGYGER	0	Unmodified	1331.7085	0.70851601	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	66.409	65.573	2	1.4223E-05	58176	160511_QHF_FH_JSI10i_2	114.86	93.988			1.1817	1.0578	18.387	6	0	Median	1.1817	0.98273	5.3547	2	0	Median	0.84153	1.0101	11.585	2	0	Median	1.3034	1.1923	NaN	1	0	Median	1.5043	1.5241	NaN	1	0	Median	1218900000	554910000	664030000	486980000	182870000	304100000	558430000	303440000	255000000	71562000	32347000	39215000	101970000	36257000	65715000	34943	1285	33069	215162;215163;215164;215165;215166;215167	290247;290248;290249;290250;290251;290252;290253;290254;290255;290256	290253			10	
LVIQSYFVQTLK	1	Unmodified	1437.8232	0.82315184	5649	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.56	2	5	6						7	4	6	6	4	84.223	80.929	2;3	1.1406E-31	72911	160511_QHF_FH_JSI12i_3	193.52	148.15			0.94277	0.96284	22.904	19	1	Median	1.1185	0.93662	20.149	4	0	Median	0.80312	0.9548	15.931	5	1	Median	1.0494	1.0021	13.591	6	0	Median	0.96067	0.99558	41.5	4	0	Median	6585500000	3417100000	3168400000	1376500000	682890000	693630000	2388300000	1420500000	967760000	1593600000	788180000	805470000	1227100000	525570000	701520000	34944	5649	33070	215168;215169;215170;215171;215172;215173;215174;215175;215176;215177;215178;215179;215180;215181;215182;215183;215184;215185;215186;215187	290257;290258;290259;290260;290261;290262;290263;290264;290265;290266;290267;290268;290269;290270;290271;290272;290273;290274;290275;290276;290277;290278;290279;290280;290281;290282;290283;290284;290285;290286;290287;290288;290289;290290;290291;290292;290293	290284			37	
LVISASWAK	1	Unmodified	973.55967	0.55966693	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	57.43	57.303	2	0.0013061	49317	160511_QHF_FH_JSI12i_3	69.628	30.606			0.96198	0.92455	16.721	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1344	1.0406	NaN	1	0	Median	0.81577	0.82145	NaN	1	0	Median	128020000	64328000	63692000	0	0	0	0	0	0	47105000	16579000	30527000	80915000	47750000	33166000	34945	3962	33071	215188;215189	290294	290294			1	
LVISHEEELIPLHK	1	Unmodified	1655.9247	0.9246568	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.331	60.062	4	0.016415	51714	160511_QHF_FH_JSI12i_3	38.799	33.908			1.7599	1.7749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7599	1.7749	NaN	1	1	Median	86281000	34283000	51997000	0	0	0	0	0	0	0	0	0	86281000	34283000	51997000	34946	183	33072	215190	290295	290295			1	
LVISHLQSGSESLLYHLSELK	1	Unmodified	2352.2689	0.26891122	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.721	90.655	4	1.3174E-06	78718	160511_QHF_FH_JSI12i_3	74.047	66.596			1.0913	1.1056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0913	1.1056	NaN	1	0	Median	62915000	34389000	28526000	0	0	0	0	0	0	0	0	0	62915000	34389000	28526000	34947	5353	33073	215191	290296;290297	290297			2	
LVISPLNQLLSMFTGPHK	1	Unmodified	1994.1023	0.10230359	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.92	102.93	3	0.00021605	89679	160511_QHF_FH_JSI12i_3	59.9	51.081			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34948	3169	33074	215192	290298	290298			1	
LVIVGDGACGK	1	Unmodified	1087.5696	0.56957969	1957;892	P61586;P08134	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	1	3	3	38.495	35.422	2	0.00014607	31681	160511_QHF_FH_JSI10i_1	83.647	54.498			0.77166	0.86085	90.662	8	2	Median	3.0176	2.5158	NaN	1	1	Median	0.933	1.0831	NaN	1	0	Median	0.60201	0.59949	60.343	3	1	Plateau	1.3385	1.4271	53.902	3	0	Median	1219500000	633600000	585870000	77822000	18816000	59006000	308980000	160750000	148230000	499940000	299650000	200290000	332730000	154390000	178340000	34949	1957;892	33075	215193;215194;215195;215196;215197;215198;215199;215200	290299;290300;290301;290302;290303;290304;290305;290306;290307;290308	290303			10	
LVIVGHSLGGGAAALLATMLR	0	Unmodified	2019.1663	0.16630083	3618	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.91	86.516	3	1.7387E-73	48725	160513_QHF_FH_JSI11Kac_6	206.74	180.3			1.319	1.2406	21.632	4	1	Median	1.5743	1.3674	NaN	1	0	Median	0.78877	0.94627	NaN	1	0	Median	1.194	1.1256	NaN	1	0	Median	1.4572	1.5471	NaN	1	1	Median	932390000	449500000	482890000	278830000	121310000	157520000	470560000	243780000	226780000	152560000	72670000	79888000	30442000	11749000	18693000	34950	3618	33076	215201;215202;215203;215204	290309;290310;290311;290312;290313	290310			5	
LVIVHPEVTVK	1	Unmodified	1232.7493	0.74925861	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	50.588	49.566	3	0.0001204	43493	160511_QHF_FH_JSI11i_3	70.488	64.763			1.245	1.2225	33.997	6	2	Median	2.406	2.0313	16.278	2	2	Median	0.82205	0.92174	NaN	1	0	Median	1.245	1.2118	12.747	2	0	Median	0.99663	1.127	NaN	1	0	Median	397930000	190250000	207680000	79788000	27735000	52053000	22695000	13174000	9520900	203580000	100840000	102740000	91870000	48503000	43367000	34951	1892	33077	215205;215206;215207;215208;215209;215210	290314;290315;290316;290317;290318;290319;290320	290314			7	
LVIVSLMELFK	1	Unmodified	1290.7621	0.76213149	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	100.49	96.236	2	7.6448E-27	48825	160513_QHF_FH_JSI12Kac_6	180.8	145.99			1.098	1.0267	21.765	8	0	Median	1.1802	0.99713	8.0433	2	0	Median	0.80001	0.9254	10.793	2	0	Median	1.2745	1.2108	18.494	2	0	Median	0.8128	0.84802	37.571	2	0	Median	1452000000	733200000	718750000	355200000	151250000	203950000	341140000	209760000	131380000	438940000	228750000	210180000	316670000	143440000	173240000	34952	3748	33078	215211;215212;215213;215214;215215;215216;215217;215218	290321;290322;290323;290324;290325;290326;290327;290328;290329;290330;290331;290332;290333	290331			13	
LVIYGGMSGCR	0	Unmodified	1211.5791	0.57909852	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	50.469	45.584	2	0.0021052	40281	160511_QHF_FH_JSI11i_3	58.676	53.691			0.95317	0.96195	14.182	6	3	Median	1.1979	0.99352	NaN	1	1	Median	0.87441	1.043	16.011	2	1	Median	0.89177	0.83964	2.9673	2	1	Median	1.1093	1.1228	NaN	1	0	Median	173330000	90528000	82801000	6814200	2697100	4117100	48534000	25869000	22665000	60925000	31141000	29784000	57057000	30821000	26235000	34953	1743	33079	215219;215220;215221;215222;215223;215224;215225	290334;290335;290336;290337;290338;290339;290340;290341	290335			8	
LVKLFNHANQEVQR	1	Acetyl (K)	1736.9322	0.93220179	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		54.717	44.989	3	0.002756	24297	160513_QHF_FH_JSI11Kac_6	63.037	51.245			0.70757	0.68563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70757	0.68563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8438600	5645200	2793400	0	0	0	0	0	0	8438600	5645200	2793400	0	0	0	34954	5608	33080	215226	290342	290342	3497		1	
LVKPGNQNTQVTEAWNK	2	Unmodified	1925.9959	0.99592426	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.81	6.21		4	7						5	6	4	4	2	40.216	36.727	2;3	6.0341E-16	30854	160511_QHF_FH_JSI10i_3	161.14	149.86			1.0887	1.0746	47.902	16	8	Median	0.81192	0.64428	59.479	6	5	Median	1.2723	1.4828	45.163	4	2	Median	1.1195	1.0746	29.208	4	1	Median	1.1106	1.1404	22.463	2	0	Median	3554300000	1659800000	1894500000	1326300000	525240000	801030000	996800000	532790000	464010000	1066400000	512690000	553670000	164830000	89074000	75759000	34955	5475	33081	215227;215228;215229;215230;215231;215232;215233;215234;215235;215236;215237;215238;215239;215240;215241;215242	290343;290344;290345;290346;290347;290348;290349;290350;290351;290352;290353;290354;290355;290356;290357;290358;290359;290360;290361;290362;290363;290364;290365;290366;290367;290368;290369	290351			27	
LVKPTTEK	2	Unmodified	914.54368	0.54368251	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	8.2956	7.9474	3	0.011523	5764	160511_QHF_FH_JSI10i_3	37.065	20.862			1.1711	1.2281	3.0618	3	0	Median	1.5361	1.2459	NaN	1	0	Median	1.0056	1.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1711	1.2281	NaN	1	0	Median	927500000	440720000	486780000	132910000	48294000	84613000	244420000	137130000	107280000	0	0	0	550180000	255290000	294890000	34956	5	33082	215243;215244;215245	290370;290371;290372	290370			3	
LVKVWNLANCK	2	Acetyl (K)	1385.7489	0.74894104	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.478	67.154	2	6.3519E-18	36626	160513_QHF_FH_JSI11Kac_6	169.12	139.65			0.72655	0.71653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72655	0.71653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38606000	19385000	19221000	0	0	0	0	0	0	38606000	19385000	19221000	0	0	0	34957	2061	33083	215246	290373	290373	2129;2131		1	
LVLADLLEPVK	1	Unmodified	1208.738	0.73802523	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	99.306	99.155	2	6.4424E-05	87623	160511_QHF_FH_JSI10i_2	93.111	83.2			1.0485	1.1045	7.7622	4	0	Median	1.1379	0.99841	NaN	1	0	Median	0.96618	1.1707	NaN	1	0	Median	1.1681	1.1609	NaN	1	0	Median	0.94887	1.0509	NaN	1	0	Median	87960000	40124000	47836000	17235000	7420800	9814000	20466000	9563700	10903000	30142000	13770000	16372000	20117000	9370100	10747000	34958	4472	33084	215247;215248;215249;215250	290374;290375;290376;290377	290376			4	
LVLAGGPLGLMQAVLDHTIPYLHVR	0	Unmodified	2682.5043	0.50434766	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	100.02	92.126	3;4	1.6881E-129	55186	160513_QHF_FH_JSI10Kac_6	246.31	232.58			1.0989	1.1301	7.2103	5	0	Median	1.3726	1.1681	NaN	1	0	Median	0.88729	1.0506	10.326	2	0	Median	1.1398	1.0727	NaN	1	0	Median	1.0989	1.1464	NaN	1	0	Median	3764300000	1773000000	1991200000	669420000	267200000	402220000	2059300000	1021200000	1038100000	390120000	171780000	218330000	645410000	312820000	332590000	34959	1277	33085	215251;215252;215253;215254;215255	290378;290379;290380;290381;290382;290383	290381			6	
LVLDAFALPLTNLFK	1	Unmodified	1673.9756	0.97562974	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.96		9	8						6	4	7	7	5	102.26	99.927	2;3	2.8275E-138	90847	160511_QHF_FH_JSI11i_2	262.54	216.08			0.9138	0.95388	16.431	15	15	Median	0.9647	0.78153	4.7831	3	3	Median	0.81914	0.96135	13.066	4	4	Median	1.0484	1.0229	23.543	4	4	Median	0.89508	0.97257	11.8	4	4	Median	1496700000	821320000	675410000	168690000	89401000	79286000	341910000	202740000	139180000	547990000	293010000	254980000	438140000	236180000	201960000	34960	1844	33086	215256;215257;215258;215259;215260;215261;215262;215263;215264;215265;215266;215267;215268;215269;215270;215271;215272;215273;215274;215275;215276;215277;215278	290384;290385;290386;290387;290388;290389;290390;290391;290392;290393;290394;290395;290396;290397;290398;290399;290400;290401;290402;290403;290404;290405;290406;290407;290408	290401			25	
LVLDPGEAPLVPVYSGK	1	Unmodified	1752.9662	0.96618726	3617	Q8NCF5	NFATC2IP	NFATC2-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			88.666	88.206	2	1.3284E-05	80102	160511_QHF_FH_JSI10i_1	103.75	83.989			0.95658	0.93779	25.512	2	1	Median	1.374	1.1232	NaN	1	0	Median	0.66598	0.783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30766000	17247000	13519000	15856000	6186800	9669100	14910000	11060000	3849400	0	0	0	0	0	0	34961	3617	33087	215279;215280	290409;290410	290409			2	
LVLDPYLLK	1	Unmodified	1072.6532	0.65323296	5531	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	83.003	82.334	2	0.00083343	72355	160511_QHF_FH_JSI11i_2	73.26	73.26			0.97476	0.94714	9.8445	5	0	Median	1.044	0.88339	NaN	1	0	Median	0.72128	0.88897	NaN	1	0	Median	1.0199	1.018	10.21	2	0	Median	0.95045	1.0566	NaN	1	0	Median	326780000	171470000	155320000	67112000	35482000	31629000	71507000	43633000	27874000	114500000	58105000	56395000	73665000	34245000	39420000	34962	5531	33088	215281;215282;215283;215284;215285	290411;290412;290413	290412			3	
LVLDSVK	1	Unmodified	772.46945	0.46945494	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			2	3	3	4	37.24	34.19	2	0.0089406	30455	160511_QHF_FH_JSI11i_1	81.297	18.582			1.0489	1.0929	17.575	12	0	Median	1.6481	1.3631	33.706	2	0	Median	0.91225	1.1121	14.35	3	0	Median	1.1176	1.1694	12.801	3	0	Median	1.0161	0.98324	10.007	4	0	Linear	5243100000	2421300000	2821800000	862140000	338060000	524080000	1348700000	674020000	674640000	1685400000	709170000	976230000	1346900000	700070000	646860000	34963	505	33089	215286;215287;215288;215289;215290;215291;215292;215293;215294;215295;215296;215297	290414;290415;290416;290417;290418;290419;290420;290421;290422;290423;290424;290425;290426;290427;290428;290429	290414			16	
LVLEIIHR	0	Unmodified	991.61785	0.61785051	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	1	2	2	57.582	54.207	3	0.0013078	47699	160511_QHF_FH_JSI11i_3	60.436	27.596			0.87319	0.73301	68.774	3	3	Median	0.87319	0.73301	NaN	1	1	Median	0.51445	0.61024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0979	2.1778	NaN	1	1	Median	37949000	18943000	19006000	12291000	6866800	5424400	11095000	7502800	3592300	0	0	0	14563000	4573100	9989700	34964	5618	33090	215298;215299;215300;215301;215302;215303	290430;290431;290432;290433;290434;290435	290430			6	
LVLEMVHHNTASLEK	1	Unmodified	1719.8978	0.89779012	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	45.514	45.369	2;3;4	1.9807E-16	38645	160511_QHF_FH_JSI12i_3	118.87	94.012			0.78838	0.80155	24.539	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75973	0.72495	43.661	2	1	Median	0.78838	0.80155	15.511	3	2	Median	1179400000	708360000	471020000	0	0	0	0	0	0	485850000	271540000	214310000	693520000	436810000	256710000	34965	5330	33091	215304;215305;215306;215307;215308;215309	290436;290437;290438;290439;290440;290441;290442	290442			7	
LVLEQVVTSIASVADTAEEK	1	Unmodified	2101.1154	0.11543027	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.73	4	6	3							2	4	3	4	102.27	102.21	2;3	3.8832E-253	91398	160511_QHF_FH_JSI11i_3	394.26	339.79			0.44432	0.49558	32.836	12	10	Median	0.39222	0.33514	4.9877	2	2	Median	0.42586	0.51972	23.535	3	3	Median	0.40508	0.40926	40.124	3	2	Plateau	0.50458	0.53641	28.493	4	3	Median	8244400000	5229200000	3015200000	967910000	663500000	304410000	917920000	615990000	301940000	1263300000	760630000	502640000	5095300000	3189100000	1906200000	34966	127	33092	215310;215311;215312;215313;215314;215315;215316;215317;215318;215319;215320;215321;215322	290443;290444;290445;290446;290447;290448;290449;290450;290451;290452;290453;290454;290455;290456	290443			14	
LVLEVAQHLGESTVR	0	Unmodified	1649.9101	0.91006937	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.35		8	10						9	6	7	7	7	65.21	61.807	2;3	1.0794E-43	33494	160513_QHF_FH_JSI11Kac_6	186.13	152.27			1.0377	1.055	22.268	25	4	Median	1.3327	1.0889	5.4483	6	1	Median	0.84692	1.0045	23.865	6	1	Median	1.1516	1.1443	8.1954	6	0	Median	0.97335	1.009	34.25	7	2	Median	28562000000	12934000000	15628000000	2130400000	953070000	1177300000	4308900000	2501200000	1807600000	7569000000	3522200000	4046800000	14554000000	5957200000	8596600000	34967	851	33093	215323;215324;215325;215326;215327;215328;215329;215330;215331;215332;215333;215334;215335;215336;215337;215338;215339;215340;215341;215342;215343;215344;215345;215346;215347;215348;215349	290457;290458;290459;290460;290461;290462;290463;290464;290465;290466;290467;290468;290469;290470;290471;290472;290473;290474;290475;290476;290477;290478;290479;290480;290481;290482;290483;290484;290485;290486;290487;290488;290489;290490;290491;290492;290493;290494;290495;290496;290497;290498;290499;290500;290501;290502;290503	290473			47	
LVLGQEELR	0	Unmodified	1055.5975	0.597509	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	101.76	101.63	2	0.036116	92219	160511_QHF_FH_JSI12i_1	46.994	8.0218			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22482000	22482000	0	0	0	0	0	0	0	0	0	0	22482000	22482000	0	34968	3146	33094	215350	290504	290504			1	
LVLIGHSIGSYFTLQMLK	1	Unmodified	2019.1227	0.12270468	4755	Q9H6V9	C2orf43	UPF0554 protein C2orf43	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	92.312	82.905	3	7.2591E-24	46603	160513_QHF_FH_JSI11Kac_6	202.34	177.55			0.93993	0.90532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93993	0.90532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147510000	41767000	105750000	0	0	0	0	0	0	83826000	41767000	42059000	63688000	0	63688000	34969	4755	33095	215351;215352	290505;290506	290505			2	
LVLIGHSIGSYFTLQMLK	1	Oxidation (M)	2035.1176	0.1176193	4755	Q9H6V9	C2orf43	UPF0554 protein C2orf43	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				87.169	78.55	3	2.9946E-08	43449	160513_QHF_FH_JSI9Kac_6	112.91	98.66			1.0737	0.91629	NaN	1	0	Median	1.0737	0.91629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103410000	49084000	54327000	103410000	49084000	54327000	0	0	0	0	0	0	0	0	0	34970	4755	33095	215353	290507	290507		2524	1	
LVLIGSNHSLPFLK	1	Unmodified	1536.9028	0.90279914	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	3	2	2	3	84.637	81.385	2;3	1.9196E-40	70794	160511_QHF_FH_JSI10i_3	198.14	183.88			1.0484	0.95461	16.004	10	0	Median	1.1684	0.94849	21.445	3	0	Plateau	1.0484	1.2008	5.0457	2	0	Median	1.077	1.0195	17.133	2	0	Median	0.86273	0.88984	3.3533	3	0	Median	986570000	467400000	519170000	341100000	151850000	189260000	149580000	79430000	70155000	242770000	105470000	137300000	253110000	130660000	122450000	34971	235	33096	215354;215355;215356;215357;215358;215359;215360;215361;215362;215363	290508;290509;290510;290511;290512;290513;290514;290515;290516;290517;290518;290519;290520;290521;290522;290523;290524	290512			16	
LVLILNK	1	Unmodified	811.55312	0.55312499	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.42		2						4	4	3	2	2	3	65.996	58.213	2	0.0027167	31589	160513_QHF_FH_JSI11Kac_6	94.669	27.675			0.68634	0.70871	62.095	9	3	Median	1.756	1.493	33.299	2	1	Median	0.80263	0.95016	21.824	2	0	Median	0.53115	0.51161	46.088	2	1	Median	0.62324	0.68956	62.959	3	1	Median	506070000	284130000	221950000	75915000	23045000	52870000	113820000	69351000	44470000	232430000	145220000	87217000	83904000	46513000	37391000	34972	4481	33097	215364;215365;215366;215367;215368;215369;215370;215371;215372;215373	290525;290526;290527;290528;290529;290530	290528			6	
LVLLDGIHR	0	Unmodified	1034.6237	0.62366417	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	53.584	52.988	3	1.0372E-07	46854	160511_QHF_FH_JSI11i_3	124.23	109.08			1.1261	1.0629	5.4532	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95183	1.0629	NaN	1	0	Median	1.0833	1.0347	NaN	1	0	Median	1.1281	1.1492	NaN	1	0	Median	223410000	114430000	108980000	0	0	0	40043000	22403000	17640000	82540000	42783000	39756000	100820000	49245000	51579000	34973	15	33098	215374;215375;215376	290531;290532;290533;290534	290532			4	
LVLLELNFLPTTGTK	1	Unmodified	1657.9655	0.96545898	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		2							10	2	2	4	4	96.488	89.508	2;3	1.7032E-54	48994	160513_QHF_FH_JSI11Kac_6	195.77	137.07			0.9132	0.9267	9.3617	7	7	Median	1.0978	0.9267	NaN	1	1	Median	0.78772	0.91915	12.907	2	2	Median	1.0381	1.0023	15.694	2	2	Median	0.88856	0.94623	5.2299	2	2	Median	1335400000	734600000	600800000	164440000	76506000	87933000	365120000	204360000	160760000	400350000	221420000	178930000	405490000	232310000	173170000	34974	1627	33099	215377;215378;215379;215380;215381;215382;215383;215384;215385;215386;215387;215388	290535;290536;290537;290538;290539;290540;290541;290542;290543;290544;290545;290546	290536			12	
LVLLFSGK	1	Unmodified	875.54804	0.54803961	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.52		2	4					2	4	3	4	2	3	73.193	68.182	2	0.0042745	56514	160511_QHF_FH_JSI9i_3	69.198	37.262			0.94191	0.97975	15.701	12	0	Median	1.1807	0.98931	16.135	3	0	Median	0.86853	1.0263	12.692	4	0	Median	1.0688	1.0124	13.527	2	0	Median	0.91123	0.91925	24.787	3	0	Median	1246800000	637850000	608990000	269060000	135660000	133400000	270390000	140800000	129590000	376980000	188950000	188030000	330420000	172450000	157970000	34975	2635	33100	215389;215390;215391;215392;215393;215394;215395;215396;215397;215398;215399;215400	290547;290548;290549;290550;290551;290552;290553;290554;290555;290556;290557;290558;290559;290560;290561	290553			15	
LVLLGESAVGK	1	Unmodified	1084.6492	0.64921022	1727;1174;1931	P20339;P51148;P61020	RAB5A;RAB5C;RAB5B	Ras-related protein Rab-5A;Ras-related protein Rab-5C;Ras-related protein Rab-5B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.42	4	4	4				5	6	2	5	6	8	6	64.135	58.44	2	2.1637E-09	30575	160513_QHF_FH_JSI9Kac_5	126.07	84.565			1.0082	1.0897	47.154	24	6	Median	1.2871	1.0682	53.204	5	1	Median	0.87495	1.0442	48.294	6	2	Median	1.0082	0.98586	51.381	8	2	Median	1.2319	1.2308	28.834	5	1	Median	5148400000	2575900000	2572500000	843400000	432730000	410670000	1221700000	661180000	560550000	1930100000	901670000	1028400000	1153200000	580360000	572800000	34976	1174;1727;1931	33101	215401;215402;215403;215404;215405;215406;215407;215408;215409;215410;215411;215412;215413;215414;215415;215416;215417;215418;215419;215420;215421;215422;215423;215424;215425	290562;290563;290564;290565;290566;290567;290568;290569;290570;290571;290572;290573;290574;290575;290576;290577;290578;290579;290580;290581;290582;290583;290584;290585;290586;290587;290588;290589;290590;290591	290570			28	
LVLLNMPGPPR	0	Unmodified	1205.6954	0.6954489	5456;5314	Q9UHW9;Q9UP95	SLC12A6;SLC12A4	Solute carrier family 12 member 6;Solute carrier family 12 member 4	no	no	0	0	0	0	By MS/MS		By matching		3	0			2							1		1		74.174	73.446	2	0.033724	60493	160511_QHF_FH_JSI9i_3	73.208	73.208			1.2589	1.1215	38.458	2	0	Median	1.7766	1.472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89208	0.85449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62030000	30126000	31904000	31705000	10910000	20795000	0	0	0	30324000	19216000	11109000	0	0	0	34977	5314;5456	33102	215426;215427	290592	290592			0	
LVLLSVLK	1	Unmodified	883.61064	0.61063987	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	82.137	81.367	2	0.0008738	70444	160511_QHF_FH_JSI12i_3	89.55	57.079			0.77728	0.70811	6.6295	2	2	Median	0.81876	0.67569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73791	0.7421	NaN	1	1	Median	103700000	54580000	49119000	41307000	21836000	19471000	0	0	0	0	0	0	62392000	32744000	29648000	34978	4286	33103	215428;215429;215430;215431	290593;290594;290595;290596	290596			4	
LVLLTASK	1	Unmodified	843.54295	0.54295423	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.65	2	4	3				1	4	4	4	5	6	3	50.684	45.193	2	0.0017591	39585	160511_QHF_FH_JSI9i_2	85.212	34.246			0.96289	0.97249	27.298	18	3	Median	1.0074	0.87286	41.384	4	1	Median	0.93557	1.101	27.132	5	1	Median	0.99346	0.98402	16.477	6	1	Median	1.1257	1.2497	34.482	3	0	Plateau	2428700000	1231600000	1197000000	483350000	214640000	268710000	631330000	351640000	279690000	919020000	456890000	462130000	394950000	208460000	186480000	34979	4010	33104	215432;215433;215434;215435;215436;215437;215438;215439;215440;215441;215442;215443;215444;215445;215446;215447;215448;215449	290597;290598;290599;290600;290601;290602;290603;290604;290605;290606;290607;290608;290609;290610;290611;290612;290613;290614;290615;290616;290617;290618;290619;290620	290610			24	
LVLMSATGDNER	0	Unmodified	1304.6395	0.63945017	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	42.654	41.687	2	3.6915E-05	35748	160511_QHF_FH_JSI12i_2	104.22	77.107			0.87706	0.81349	21.554	4	1	Linear	1.6585	1.404	NaN	1	1	Median	0.9085	1.1055	NaN	1	0	Median	0.84671	0.88537	NaN	1	0	Median	0.79052	0.90125	NaN	1	0	Median	237750000	117220000	120530000	54439000	20452000	33987000	51923000	30263000	21660000	78298000	39621000	38677000	53095000	26889000	26206000	34980	3221	33105	215450;215451;215452;215453	290621;290622;290623;290624	290622			3	
LVLPAPQISDAELQEVVK	1	Unmodified	1948.0881	0.088093311	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	98.627	98.492	2;3	1.9881E-07	89475	160511_QHF_FH_JSI11i_1	88.133	79.036			1.1632	1.0776	12.656	6	1	Median	1.2368	0.99591	7.2884	2	1	Median	0.86034	1.0028	14.034	2	0	Median	1.1535	1.1286	NaN	1	0	Median	1.2426	1.2858	NaN	1	0	Median	227380000	110810000	116570000	38875000	15707000	23167000	100880000	54981000	45894000	41046000	18923000	22123000	46584000	21202000	25382000	34981	4271	33106	215454;215455;215456;215457;215458;215459	290625;290626;290627;290628;290629;290630;290631;290632;290633;290634;290635;290636;290637	290627			13	
LVLPMIK	1	Unmodified	812.51938	0.51938202	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	69.895	69.211	2	0.0091535	58114	160511_QHF_FH_JSI10i_3	80.377	63.45			1.1149	1.0646	8.489	9	0	Median	1.1959	0.99027	4.2369	2	0	Median	0.86223	1.0646	6.0704	3	0	Median	1.0275	1.0287	6.7731	3	0	Plateau	1.2393	1.2482	NaN	1	0	Median	1526000000	746950000	779040000	308030000	136080000	171950000	422280000	231940000	190340000	621420000	297990000	323430000	174260000	80940000	93317000	34982	127	33107	215460;215461;215462;215463;215464;215465;215466;215467;215468	290638;290639;290640;290641;290642;290643;290644;290645;290646;290647;290648;290649;290650;290651;290652;290653;290654	290644			17	
LVLPSLISSR	0	Unmodified	1083.6652	0.66519463	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	2	1	1	1	77.551	75.206	2	1.8593E-07	62825	160511_QHF_FH_JSI9i_3	117.89	70.823			1.0191	0.93887	4.3368	5	0	Median	1.1245	0.9395	0.094129	2	0	Median	0.73753	0.86642	NaN	1	0	Median	1.0191	0.97166	NaN	1	0	Median	0.88654	0.90815	NaN	1	0	Median	888350000	481240000	407110000	356260000	179210000	177050000	196420000	121740000	74680000	188020000	100150000	87869000	147650000	80141000	67514000	34983	2374	33108	215469;215470;215471;215472;215473	290655;290656;290657;290658;290659;290660;290661	290659			6	
LVLPSLLAALEEESWR	0	Unmodified	1824.9986	0.99855002	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			4								1	2	1	102.65	102.66	2;3	1.5709E-23	85110	160511_QHF_FH_JSI10i_3	126.48	115.54			0.87188	0.92426	7.08	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93593	0.8807	9.9458	2	0	Median	0.83266	0.86832	NaN	1	0	Median	140720000	74543000	66182000	0	0	0	0	0	0	91606000	46991000	44615000	49119000	27552000	21567000	34984	3860	33109	215474;215475;215476;215477	290662;290663;290664;290665	290665			4	
LVLQYAPSA	0	Unmodified	960.52803	0.52803245	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	3	1	66.624	61.618	2	0.00054897	55833	160511_QHF_FH_JSI12i_1	78.616	70.676			0.9032	0.93768	11.297	8	0	Median	1.283	1.0666	NaN	1	0	Median	0.86041	1.0033	8.6935	3	0	Plateau	0.97849	0.95118	10.342	3	0	Median	0.78621	0.79729	NaN	1	0	Median	721270000	357440000	363830000	165810000	77248000	88560000	145120000	74503000	70617000	226160000	107210000	118950000	184180000	98479000	85704000	34985	178	33110	215478;215479;215480;215481;215482;215483;215484;215485	290666;290667;290668;290669;290670;290671;290672;290673;290674;290675;290676;290677;290678;290679	290670			14	
LVLSDLHLLTQSQVR	0	Unmodified	1720.9836	0.98356866	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		8	8						2	5	4	5	4	81.487	79.77	2;3	1.3026E-29	70102	160511_QHF_FH_JSI12i_3	204.49	204.49			1.0367	1.0436	15.4	16	0	Median	1.4142	1.2328	20.833	5	0	Median	0.79785	0.94372	14.575	4	0	Median	1.1167	1.2152	9.4804	4	0	Linear	1.1174	1.1318	9.8564	3	0	Plateau	2752100000	1300800000	1451300000	432100000	177160000	254940000	469890000	254810000	215080000	932860000	390860000	541990000	917240000	478000000	439240000	34986	1388	33111	215486;215487;215488;215489;215490;215491;215492;215493;215494;215495;215496;215497;215498;215499;215500;215501;215502;215503	290680;290681;290682;290683;290684;290685;290686;290687;290688;290689;290690;290691;290692;290693;290694;290695;290696;290697;290698;290699;290700;290701;290702;290703;290704;290705;290706	290704			26	
LVLSELLAIMNK	1	Unmodified	1342.7894	0.78940887	4633	Q9H0H0	INTS2	Integrator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	102.18	102.08	2	7.2501E-06	88955	160511_QHF_FH_JSI12i_3	123.86	64.883			0.32271	0.38304	91.586	3	3	Median	0.78535	0.64017	NaN	1	1	Median	0.32271	0.38304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10676	0.10801	NaN	1	1	Median	1442400000	1335000000	107450000	39627000	19792000	19835000	93939000	80165000	13774000	0	0	0	1308800000	1235000000	73841000	34987	4633	33112	215504;215505;215506	290707;290708;290709	290709			3	
LVLSKLYEEGSNK	2	Acetyl (K)	1520.8086	0.80862399	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								6			2	2	2	75.354	64.784	2;3	4.2157E-16	34496	160513_QHF_FH_JSI11Kac_5	134.75	99.525			0.75117	0.82371	55.796	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1016	1.2721	9.3294	2	0	Median	0.3863	0.37595	0.71341	2	0	Median	0.75117	0.82371	14.547	2	0	Median	21609000	13423000	8185200	0	0	0	4936400	2668200	2268100	12569000	8317400	4251100	4103700	2437800	1665900	34988	1266	33113	215507;215508;215509;215510;215511;215512	290710;290711;290712;290713;290714;290715;290716;290717	290710	1167		8	
LVLSLEPLEHPLISSPSFFSK	1	Unmodified	2339.2777	0.277685	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.53	101.54	3	1.3146E-22	88212	160511_QHF_FH_JSI12i_3	154.6	135.82			0.94329	0.95527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94329	0.95527	NaN	1	1	Median	624720000	373600000	251130000	0	0	0	0	0	0	0	0	0	624720000	373600000	251130000	34989	2977	33114	215513	290718	290718			1	
LVLSQLPNFWK	1	Unmodified	1343.7602	0.76015765	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		99.773	99.647	2	9.1017E-08	82515	160511_QHF_FH_JSI10i_3	141.88	114.76			0.99437	0.96584	1.8672	3	0	Median	1.1902	0.98371	NaN	1	0	Median	0.83982	0.96584	NaN	1	0	Median	0.99437	0.94765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147250000	75945000	71301000	45524000	19028000	26496000	36801000	19617000	17184000	64921000	37300000	27621000	0	0	0	34990	4159	33115	215514;215515;215516	290719;290720;290721;290722;290723;290724	290721			6	
LVLTNNQLTTLPR	0	Unmodified	1481.8566	0.85657723	5473	Q9UQ13	SHOC2	Leucine-rich repeat protein SHOC-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	66.765	65.985	2	0.00012398	58478	160511_QHF_FH_JSI10i_2	87.184	58.98			0.87371	0.9582	28.71	5	1	Median	1.2213	1.0704	NaN	1	0	Median	0.87371	1.0686	NaN	1	0	Median	0.89249	0.88264	NaN	1	0	Median	0.68086	0.71643	41.121	2	1	Median	235370000	137200000	98171000	32272000	17036000	15236000	38901000	23299000	15602000	42429000	23786000	18643000	121770000	73079000	48690000	34991	5473	33116	215517;215518;215519;215520;215521	290725;290726;290727	290726			3	
LVLTQEQLHQLHSR	0	Unmodified	1700.9322	0.93220179	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	40.961	40.141	3;4	9.4551E-05	33765	160511_QHF_FH_JSI10i_3	73.022	62.683			1.1921	1.2529	27.096	4	0	Median	2.4441	1.9895	NaN	1	0	Median	1.2116	1.3835	NaN	1	0	Median	1.1728	1.1067	NaN	1	0	Median	1.1036	1.1347	NaN	1	0	Median	509460000	244200000	265260000	66100000	20906000	45195000	151090000	76998000	74091000	193960000	84769000	109190000	98313000	61524000	36789000	34992	2516	33117	215522;215523;215524;215525	290728;290729;290730	290728			3	
LVLVGDGGTGK	1	Unmodified	1014.571	0.5709599	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.46	7	4	2			3	3	4	2	4	6	7	8	41.052	36.053	2	5.1918E-23	32202	160511_QHF_FH_JSI10i_1	171.36	47.13			0.91681	0.98141	32.655	25	3	Median	1.1798	1.0189	14.01	4	0	Median	0.79343	0.92562	30.613	6	1	Median	1.0263	1.0128	30.82	7	1	Median	0.89158	0.93572	44.276	8	1	Median	40524000000	19277000000	21247000000	7590600000	3332600000	4258000000	10044000000	4841000000	5202500000	11031000000	5151400000	5879900000	11859000000	5952000000	5906900000	34993	2021	33118	215526;215527;215528;215529;215530;215531;215532;215533;215534;215535;215536;215537;215538;215539;215540;215541;215542;215543;215544;215545;215546;215547;215548;215549;215550	290731;290732;290733;290734;290735;290736;290737;290738;290739;290740;290741;290742;290743;290744;290745;290746;290747;290748;290749;290750;290751;290752;290753;290754;290755;290756;290757;290758;290759;290760;290761;290762;290763;290764;290765;290766;290767;290768;290769;290770;290771	290750			40	
LVLVLAHLFGR	0	Unmodified	1236.7707	0.77066276	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	89.557	81.483	2;3	1.0365E-25	45009	160513_QHF_FH_JSI9Kac_6	153.05	111.34			0.88689	0.92566	181.4	8	8	Median	1.3286	1.1303	283.95	2	2	Median	0.37352	0.43077	216.19	3	3	Median	0.64281	0.61555	165.88	2	2	Median	4.3659	4.5581	NaN	1	1	Median	854150000	429700000	424440000	221530000	94582000	126940000	418520000	226540000	191980000	144120000	66793000	77328000	69976000	41787000	28189000	34994	3454	33119	215551;215552;215553;215554;215555;215556;215557;215558;215559;215560	290772;290773;290774;290775;290776;290777;290778;290779;290780;290781	290776			10	
LVLVLGDLHIPHR	0	Unmodified	1480.8878	0.88781778	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.59	6.21			11						6	6	5	3	3	80.857	77.496	3;4	4.0766E-06	39224	160513_QHF_FH_JSI11Kac_6	96.64	81.268			1.1313	0.91987	30.121	17	1	Median	1.1331	0.91363	34.48	6	0	Median	0.75195	0.8579	39.436	5	1	Median	1.323	1.1486	12.763	3	0	Plateau	1.1679	1.2003	15.019	3	0	Plateau	2173800000	1039200000	1134700000	709490000	281870000	427620000	1145400000	611160000	534250000	171040000	73946000	97091000	147880000	72174000	75706000	34995	5246	33120	215561;215562;215563;215564;215565;215566;215567;215568;215569;215570;215571;215572;215573;215574;215575;215576;215577	290782;290783;290784;290785;290786;290787;290788;290789;290790;290791;290792;290793;290794;290795;290796;290797;290798;290799;290800;290801;290802;290803;290804;290805;290806;290807;290808;290809;290810;290811;290812;290813;290814;290815;290816;290817;290818;290819;290820	290796			39	
LVLVNAIYFK	1	Unmodified	1178.7063	0.70633117	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	86.096	82.924	2	6.1186E-13	41677	160513_QHF_FH_JSI11Kac_6	160.19	108.84			0.96903	0.9726	17.321	12	0	Median	0.92505	0.78691	18.928	3	0	Plateau	0.73416	0.84793	15.3	3	0	Plateau	0.86386	0.80634	24.359	3	0	Plateau	1.0611	1.1087	17.479	3	0	Median	7905200000	4125900000	3779400000	1551000000	717210000	833790000	3581900000	1972300000	1609600000	1773000000	911420000	861580000	999300000	524940000	474360000	34996	1363	33121	215578;215579;215580;215581;215582;215583;215584;215585;215586;215587;215588;215589	290821;290822;290823;290824;290825;290826;290827;290828;290829;290830;290831;290832;290833;290834;290835;290836;290837;290838;290839;290840;290841;290842;290843;290844;290845;290846	290830			26	
LVLVNAVYFK	1	Unmodified	1164.6907	0.6906811	861	P07093	SERPINE2	Glia-derived nexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		83.777	75.934	2	0.0013189	42908	160513_QHF_FH_JSI10Kac_6	86.095	46.947			0.17617	0.20874	18.473	3	3	Plateau	0.34461	0.29403	NaN	1	1	Median	0.17579	0.20741	NaN	1	1	Median	0.28531	0.27431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	456540000	386840000	69696000	90336000	67394000	22942000	247690000	223350000	24342000	118510000	96102000	22412000	0	0	0	34997	861	33122	215590;215591;215592	290847;290848;290849	290849			3	
LVLVNAVYFR	0	Unmodified	1192.6968	0.69682911	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	81.115	77.683	2	2.4545E-56	41044	160513_QHF_FH_JSI10Kac_6	223.53	201.4			0.9656	1.0211	8.3871	13	0	Median	1.2865	1.1686	12.621	3	0	Plateau	0.76953	1.0193	10.071	4	0	Linear	1.0732	1.0211	7.7418	3	0	Median	0.93354	0.97479	3.6723	3	0	Plateau	14249000000	6764000000	7485200000	3850000000	1468600000	2381400000	5860600000	3145800000	2714800000	3180700000	1534400000	1646300000	1357800000	615150000	742670000	34998	1425	33123	215593;215594;215595;215596;215597;215598;215599;215600;215601;215602;215603;215604;215605	290850;290851;290852;290853;290854;290855;290856;290857;290858;290859;290860;290861;290862;290863;290864;290865;290866;290867;290868;290869;290870;290871;290872;290873;290874;290875;290876;290877;290878;290879;290880	290877			30	
LVLVSPTSEQYDSLLR	0	Unmodified	1818.9727	0.9727292	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	86.416	85.79	2;3	1.3577E-05	75492	160511_QHF_FH_JSI11i_2	118.87	61.517			0.88385	0.97713	15.796	7	1	Median	1.2223	1.0448	25.682	2	0	Median	0.75648	0.94865	12.708	2	0	Median	0.89051	0.87491	18.85	2	1	Median	0.88385	0.97713	NaN	1	0	Median	177870000	89409000	88461000	43775000	16409000	27366000	45219000	24452000	20767000	58182000	32656000	25525000	30694000	15892000	14803000	34999	103	33124	215606;215607;215608;215609;215610;215611;215612	290881;290882;290883;290884;290885;290886;290887;290888;290889	290885			9	
LVLWDINK	1	Unmodified	999.57532	0.57531699	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	73.596	72.645	2	0.0025205	62684	160511_QHF_FH_JSI12i_2	79.469	43.283			0.99873	1.0659	15.052	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92223	0.95826	NaN	1	0	Median	1.0816	1.1856	NaN	1	0	Median	137580000	69725000	67854000	0	0	0	0	0	0	76957000	41473000	35484000	60622000	28252000	32370000	35000	3602	33125	215613;215614	290890	290890			1	
LVLYDRPLK	1	Unmodified	1115.6703	0.67028001	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	44.32	43.473	2;3	5.7858E-06	36344	160511_QHF_FH_JSI10i_3	98.033	83.826			0.82789	0.7864	6.5653	4	0	Linear	1.1423	0.92525	NaN	1	0	Median	0.765	0.89259	NaN	1	0	Median	0.85453	0.81276	NaN	1	0	Median	0.80208	0.81411	NaN	1	0	Median	923030000	494210000	428820000	181350000	86851000	94500000	185370000	110150000	75223000	321140000	156950000	164190000	235170000	140260000	94906000	35001	4254	33126	215615;215616;215617;215618;215619	290891;290892;290893;290894;290895;290896;290897;290898;290899	290894			9	
LVLYPSAQEK	1	Unmodified	1146.6285	0.62847478	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	44.601	43.425	2	0.0023646	37297	160511_QHF_FH_JSI11i_2	63.534	41.448			0.73988	0.85097	6.7514	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72326	0.89258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75688	0.8113	NaN	1	0	Median	73336000	44160000	29176000	0	0	0	31060000	19477000	11583000	0	0	0	42276000	24683000	17593000	35002	3064	33127	215620;215621;215622	290900;290901;290902;290903	290902			4	
LVMAAANR	0	Unmodified	844.45891	0.45890703	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			18.37	17.566	2	0.003527	14801	160511_QHF_FH_JSI9i_2	71.949	45.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35003	1848	33128	215623;215624	290904;290905	290904			2	
LVMAGETTNSR	0	Unmodified	1177.5761	0.57612163	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	2	3	1	21.445	19.881	2	1.5619E-05	16369	160511_QHF_FH_JSI11i_2	105.4	100.43			1.0219	1.1196	7.5216	7	0	Median	1.3262	1.1287	NaN	1	0	Median	0.95389	1.1603	5.0556	2	0	Median	1.0219	1.0305	2.3071	3	0	Median	1.1901	1.2269	NaN	1	0	Median	458530000	216840000	241690000	82861000	34533000	48328000	132840000	66063000	66775000	190570000	89106000	101470000	52253000	27140000	25113000	35004	1273	33129	215625;215626;215627;215628;215629;215630;215631	290906;290907;290908;290909;290910;290911;290912;290913;290914;290915	290914			10	
LVMAQHMIR	0	Unmodified	1097.5838	0.58378997	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			42.894	33.926	3	3.028E-05	18271	160513_QHF_FH_JSI10Kac_6	89.698	67.012			0.96472	0.84582	11.638	3	0	Plateau	1.0977	0.94744	16.045	2	0	Median	0.7708	0.90581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115480000	64545000	50934000	86183000	44776000	41407000	29295000	19769000	9526400	0	0	0	0	0	0	35005	1585	33130	215632;215633;215634	290916;290917;290918	290918			2	
LVMEDGK	1	Unmodified	790.38949	0.38949006	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	16.303	15.76	2	0.027924	13146	160511_QHF_FH_JSI11i_1	53.351	25.097			0.75263	0.63478	22.707	3	0	Median	0.75263	0.62887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97227	0.93619	NaN	1	0	Median	0.59254	0.63478	NaN	1	0	Median	924650000	520430000	404220000	335170000	180860000	154310000	0	0	0	306410000	159280000	147120000	283070000	180280000	102790000	35006	1609	33131	215635;215636;215637	290919	290919			1	
LVMEEAPESYK	1	Oxidation (M)	1310.6064	0.60641871	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	1	0	By MS/MS				1	0	2									2				42.312	41.098	2	0.0081075	36389	160511_QHF_FH_JSI9i_1	74.424	59.009			2.5083	2.051	68.978	2	2	Median	2.5083	2.051	68.978	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178780000	55525000	123250000	178780000	55525000	123250000	0	0	0	0	0	0	0	0	0	35007	5596	33132	215638;215639	290920;290921	290920		2707	2	
LVMELSGEMVRK	1	Unmodified	1390.7312	0.73124206	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		2	3	2	53.675	53.337	2;3	1.1577E-05	45599	160511_QHF_FH_JSI12i_3	87.216	70.684			0.81031	0.80018	47.676	6	4	Median	NaN	NaN	NaN	0	0	Median	0.99982	1.1834	NaN	1	0	Median	0.93145	0.88647	67.448	3	3	Median	0.65748	0.67851	8.8431	2	1	Median	772060000	400800000	371260000	0	0	0	54521000	29990000	24532000	389930000	190300000	199630000	327610000	180510000	147100000	35008	497	33133	215640;215641;215642;215643;215644;215645;215646	290922;290923;290924;290925;290926;290927;290928	290925			7	
LVMEPTFKPWQMK	2	Unmodified	1633.836	0.83604149	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.323	73.53	3	5.5294E-05	63606	160511_QHF_FH_JSI12i_3	69.602	61.821			0.99512	0.95016	3.9184	4	1	Median	1.1878	0.94668	NaN	1	0	Median	0.82847	0.95366	NaN	1	1	Median	1.0925	1.0215	NaN	1	0	Median	0.9064	0.93711	NaN	1	0	Median	438210000	225680000	212530000	49435000	22184000	27251000	59030000	26536000	32493000	146890000	81908000	64983000	182860000	95056000	87800000	35009	2900	33134	215647;215648;215649;215650	290929;290930;290931;290932;290933;290934;290935	290934			7	
LVMGGPQQLYHLDAYIPLQINSHESK	1	Unmodified	2950.5011	0.50111278	5069	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	98.207	98.168	4	1.4199E-17	84807	160511_QHF_FH_JSI12i_3	104.66	98.293			0.91472	0.97427	6.5241	3	1	Median	NaN	NaN	NaN	0	0	Median	0.82675	0.97427	NaN	1	1	Median	1.1302	1.0635	NaN	1	0	Median	0.91472	0.93614	NaN	1	0	Median	297170000	152640000	144530000	0	0	0	16224000	9952600	6271700	133150000	65301000	67849000	147790000	77384000	70411000	35010	5069	33135	215651;215652;215653	290936;290937;290938;290939;290940	290940			5	
LVMLYALHYER	0	Unmodified	1406.738	0.738042	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	74.58	66.042	2;3	1.8289E-10	36456	160513_QHF_FH_JSI10Kac_6	147.2	125.74			1.2583	1.2077	34.577	9	3	Median	1.023	0.86573	30.414	2	1	Median	1.0069	1.2077	49.794	3	2	Median	1.4765	1.4198	28.325	2	0	Median	1.2653	1.3266	0.43153	2	0	Median	1643200000	736270000	906900000	476110000	216860000	259250000	600580000	273490000	327090000	302680000	126770000	175910000	263790000	119140000	144650000	35011	4967	33136	215654;215655;215656;215657;215658;215659;215660;215661;215662	290941;290942;290943;290944;290945;290946;290947;290948;290949;290950;290951;290952;290953;290954	290954			14	
LVMLYALHYER	0	Oxidation (M)	1422.733	0.73295662	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	1		3	65.734	56.382	2;3	0.00065663	29546	160513_QHF_FH_JSI12Kac_6	63.944	55.431			1.0085	1.0735	13.856	5	0	Median	1.2359	1.0729	NaN	1	0	Median	0.98193	1.1699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90052	0.96201	18.391	3	0	Plateau	192430000	91595000	100830000	67384000	24377000	43007000	38694000	18392000	20302000	0	0	0	86352000	48826000	37526000	35012	4967	33136	215663;215664;215665;215666;215667	290955;290956;290957;290958;290959	290957		2563	5	
LVMSYVAAVCGK	1	Unmodified	1296.657	0.65701449	376	O43795;Q9UBC5	MYO1B;MYO1A	Unconventional myosin-Ib;Unconventional myosin-Ia	yes	no	0	0	0	0		By MS/MS			16	0									1		1			50.835	42.223	3	0.059053	23318	160513_QHF_FH_JSI10Kac_6	22.578	2.9192			0.4673	0.53771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4673	0.53771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13466000	7487000	5979000	0	0	0	13466000	7487000	5979000	0	0	0	0	0	0	35013	376	33137	215668	290960	290960			1	
LVNACLAEELPHIHAFEQK	1	Unmodified	2218.1205	0.12047285	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	76.299	75.83	3;4	1.4921E-14	65594	160511_QHF_FH_JSI12i_3	153.25	143.3			0.85597	0.96629	17.92	7	0	Median	0.85597	0.73631	NaN	1	0	Median	0.80308	0.96629	NaN	1	0	Median	0.82343	0.76589	4.521	2	0	Median	1.1263	1.0983	2.9473	3	0	Plateau	1043000000	508260000	534750000	19975000	8927200	11048000	75052000	39485000	35567000	486340000	269280000	217060000	461650000	190570000	271080000	35014	4695	33138	215669;215670;215671;215672;215673;215674;215675	290961;290962;290963;290964;290965;290966	290966			6	
LVNANGEAVYCK	1	Unmodified	1336.6445	0.64453555	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	28.489	27.849	2	2.6835E-07	24575	160511_QHF_FH_JSI10i_1	129.85	95.599			1.1887	1.2117	32.745	6	5	Median	1.5655	1.3058	51.278	2	2	Median	0.9419	1.1186	NaN	1	0	Median	1.1049	1.0713	46.949	2	2	Median	1.2832	1.3125	NaN	1	1	Median	341470000	156090000	185380000	65055000	25280000	39775000	59501000	32011000	27490000	150160000	67943000	82221000	66754000	30861000	35893000	35015	800	33139	215676;215677;215678;215679;215680;215681	290967;290968;290969;290970;290971;290972;290973	290970			7	
LVNAQQAK	1	Unmodified	870.49232	0.49231565	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.4856	7.2501	2	0.0083895	5137	160511_QHF_FH_JSI12i_1	66.993	46.009			0.83414	0.96405	59.303	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.83414	0.96405	NaN	1	0	Median	3.0154	2.9213	NaN	1	1	Median	2.3701	2.4175	NaN	1	1	Median	262870000	108880000	153990000	0	0	0	98599000	50968000	47631000	78943000	26358000	52585000	85332000	31558000	53774000	35016	163	33140	215682;215683;215684	290974;290975;290976	290975			3	
LVNELTEFAK	1	Unmodified	1162.6234	0.6233894	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								2	3	4	2	59.781	59.092	2	1.6464E-06	53455	160511_QHF_FH_JSI10i_1	119.75	95.792		+	0.64075	0.55351	86.05	11	10	Median	0.98937	0.83996	58.983	2	1	Median	0.28539	0.33906	95.442	3	3	Plateau	0.57496	0.57342	116.95	4	4	Median	0.67459	0.71355	100.45	2	2	Median	2540200000	1559300000	980900000	285250000	128870000	156380000	646630000	417070000	229560000	1033300000	627110000	406230000	575000000	386270000	188730000	35017	50	33141	215685;215686;215687;215688;215689;215690;215691;215692;215693;215694;215695	290977;290978;290979;290980;290981;290982;290983;290984;290985;290986;290987;290988;290989;290990	290984			14	
LVNELTEK	1	Unmodified	944.51786	0.51786169	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.622	24.29	2	0.0096523	21164	160511_QHF_FH_JSI11i_1	64.207	25.401			2.5897	2.6351	36.134	3	3	Plateau	NaN	NaN	NaN	0	0	Median	3.631	4.1706	NaN	1	1	Median	3.4286	3.3685	NaN	1	1	Median	1.9561	2.0614	NaN	1	1	Median	526850000	199300000	327560000	0	0	0	120230000	31697000	88533000	183370000	66608000	116760000	223260000	100990000	122270000	35018	3328	33142	215696;215697;215698	290991;290992;290993	290991			3	
LVNEVYHMYNR	0	Unmodified	1436.6871	0.68706906	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								2	3	1	38.378	37.878	3	0.00033574	32035	160511_QHF_FH_JSI12i_3	63.727	49.763			0.5533	0.53792	111.56	6	5	Median	NaN	NaN	NaN	0	0	Median	1.0718	1.3322	152.6	2	2	Median	0.56608	0.56455	94.552	3	3	Median	0.22405	0.23233	NaN	1	0	Median	243220000	143510000	99709000	0	0	0	78548000	43840000	34708000	124950000	65750000	59195000	39723000	33918000	5805500	35019	1822	33143	215699;215700;215701;215702;215703;215704	290994;290995;290996;290997;290998;290999	290999			6	
LVNGMGQSLIVSWSK	1	Unmodified	1617.8549	0.85486267	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	2	2	81.098	76.344	2;3	2.4262E-62	39937	160513_QHF_FH_JSI11Kac_6	205.72	169.39			0.79697	0.78414	13.877	5	2	Median	0.79697	0.67428	NaN	1	0	Median	0.66128	0.78414	NaN	1	0	Median	0.93772	0.89689	10.3	2	1	Median	0.70247	0.71819	NaN	1	1	Median	240310000	144110000	96199000	41368000	24862000	16505000	66876000	43473000	23402000	64060000	35305000	28755000	68002000	40466000	27536000	35020	344	33144	215705;215706;215707;215708;215709;215710	291000;291001;291002;291003;291004;291005	291001			6	
LVNHFVEEFK	1	Unmodified	1260.6503	0.65027285	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.47		13	14						15	10	10	11	11	51.691	47.789	2;3	1.3537E-10	25857	160513_QHF_FH_JSI11Kac_6	140.16	101.2			1.0926	1.1169	93.209	42	39	Median	1.5173	1.2501	95.778	10	9	Median	0.81662	0.96054	77.431	10	8	Median	1.1583	1.1385	95.142	11	11	Median	1.511	1.6184	110.75	11	11	Median	52234000000	25287000000	26947000000	5037400000	2108500000	2928800000	10777000000	6633700000	4143000000	21754000000	9839200000	11915000000	14666000000	6705300000	7960200000	35021	954	33145	215711;215712;215713;215714;215715;215716;215717;215718;215719;215720;215721;215722;215723;215724;215725;215726;215727;215728;215729;215730;215731;215732;215733;215734;215735;215736;215737;215738;215739;215740;215741;215742;215743;215744;215745;215746;215747;215748;215749;215750;215751;215752	291006;291007;291008;291009;291010;291011;291012;291013;291014;291015;291016;291017;291018;291019;291020;291021;291022;291023;291024;291025;291026;291027;291028;291029;291030;291031;291032;291033;291034;291035;291036;291037;291038;291039;291040;291041;291042;291043;291044;291045;291046;291047;291048;291049;291050;291051;291052;291053;291054;291055;291056;291057;291058;291059;291060;291061;291062;291063;291064;291065;291066;291067;291068;291069;291070	291025			65	
LVNHFVEEFKR	1	Acetyl (K)	1458.7619	0.76194857	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	65.736	56.684	2;3	4.0695E-05	31124	160513_QHF_FH_JSI10Kac_6	104.43	88.862			0.83677	0.88159	62.161	8	3	Median	0.99597	0.82373	NaN	1	0	Median	0.88016	1.0136	10.647	3	2	Median	0.27525	0.26593	7.3018	2	0	Median	0.69953	0.73397	58.5	2	1	Median	271440000	174920000	96528000	15094000	7351700	7742600	89215000	42138000	47077000	140800000	109830000	30972000	26335000	15598000	10737000	35022	954	33146	215753;215754;215755;215756;215757;215758;215759;215760	291071;291072;291073;291074;291075;291076;291077	291076	719		7	
LVNHFVEEFKRK	2	Acetyl (K)	1586.8569	0.85691158	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		60.658	51.59	4	3.1905E-05	28173	160513_QHF_FH_JSI11Kac_6	93.011	80.865			0.25603	0.2712	237.97	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2231	1.4591	NaN	1	0	Median	0.053596	0.050407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176130000	114920000	61207000	0	0	0	97668000	38931000	58736000	78462000	75991000	2470600	0	0	0	35023	954	33147	215761;215762	291078;291079;291080	291078	719		3	
LVNIMPYELTR	0	Unmodified	1347.7221	0.72205759	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	76.905	75.661	2	0.00039931	65456	160511_QHF_FH_JSI12i_2	87.913	69.133			0.77997	0.8583	5.6467	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77997	0.8583	5.6467	2	2	Median	118460000	64800000	53659000	0	0	0	0	0	0	0	0	0	118460000	64800000	53659000	35024	971	33148	215763;215764	291081;291082	291082			2	
LVNIRNDDIADGNPK	1	Unmodified	1652.8482	0.84819739	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	35.841	35.126	3	0.005304	29215	160511_QHF_FH_JSI10i_3	44.294	31.668			0.84869	0.75374	27.789	5	1	Median	0.84869	0.75374	NaN	1	0	Median	0.77693	0.91684	36.758	2	0	Median	1.0741	1.0208	NaN	1	0	Median	0.60398	0.60317	NaN	1	1	Median	303000000	145090000	157910000	46339000	21187000	25151000	122350000	58931000	63417000	107740000	46952000	60786000	26580000	18023000	8557500	35025	2636	33149	215765;215766;215767;215768;215769	291083;291084;291085;291086;291087;291088;291089;291090;291091	291086			9	
LVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDK	1	Unmodified	3958.8627	0.8626903	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		97.605	89.526	4	1.634E-132	50535	160513_QHF_FH_JSI11Kac_6	236.73	227.64			0.79638	0.93898	27.693	3	0	Plateau	1.7886	1.5112	NaN	1	0	Median	0.79638	0.93898	NaN	1	0	Median	0.99131	0.932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	696820000	356290000	340540000	163490000	62197000	101290000	363440000	198400000	165040000	169890000	95689000	74202000	0	0	0	35026	1234	33150	215770;215771;215772	291092;291093;291094	291093			3	
LVNLQHLDLLNNK	1	Unmodified	1532.8675	0.86747627	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		8	8						4	5	5	5	5	72.076	69.712	2;3	2.1981E-66	60465	160511_QHF_FH_JSI12i_3	227.81	179.01			0.97771	0.97593	17.384	20	2	Median	1.2568	1.0724	13.847	5	0	Median	0.78726	0.96787	30.878	5	1	Median	0.94353	0.92493	12.224	5	0	Median	0.92614	0.98189	7.2835	5	1	Median	10128000000	4722300000	5406200000	1199600000	448850000	750740000	1991800000	959630000	1032200000	2989100000	1470700000	1518500000	3947900000	1843100000	2104800000	35027	3968	33151	215773;215774;215775;215776;215777;215778;215779;215780;215781;215782;215783;215784;215785;215786;215787;215788;215789;215790;215791;215792	291095;291096;291097;291098;291099;291100;291101;291102;291103;291104;291105;291106;291107;291108;291109;291110;291111;291112;291113;291114;291115;291116;291117;291118;291119;291120;291121;291122;291123;291124;291125;291126;291127;291128;291129;291130;291131;291132;291133;291134;291135;291136;291137;291138;291139;291140;291141;291142;291143;291144;291145;291146	291140			51	
LVNLQHLDLLNNKLVTLPVSFAQLK	2	Acetyl (K)	2871.6586	0.6585997	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		97.503	88.097	3	2.8258E-22	50298	160513_QHF_FH_JSI11Kac_6	128.17	116.58			0.46998	0.45988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46998	0.45988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88174000	66075000	22099000	0	0	0	0	0	0	88174000	66075000	22099000	0	0	0	35028	3968	33152	215793	291147	291147	3017;3018		1	
LVNLYGLLHGLQAAVAQQDTLMEAR	0	Unmodified	2723.4429	0.44286962	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.696	91.976	3	1.2394E-05	53636	160513_QHF_FH_JSI10Kac_6	97.124	84.928			1.1189	1.3042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1189	1.3042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106420000	36668000	69757000	0	0	0	106420000	36668000	69757000	0	0	0	0	0	0	35029	3915	33153	215794	291148	291148			1	
LVNNGEK	1	Unmodified	772.40792	0.40791731	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	2	1	1	4.8596	4.527	2	0.012734	2456	160511_QHF_FH_JSI10i_1	68.915	8.127			0.92138	0.98013	9.968	5	0	Median	1.3901	1.1622	NaN	1	0	Median	0.79657	0.95504	1.9258	2	0	Median	1.1736	1.1441	NaN	1	0	Median	0.92138	0.98013	NaN	1	0	Median	2926100000	1356200000	1569900000	338130000	148710000	189420000	889160000	456090000	433070000	816190000	369480000	446700000	882640000	381940000	500700000	35030	2665	33154	215795;215796;215797;215798;215799	291149;291150	291149			2	
LVNQQLLADPLVPPQLTIK	1	Unmodified	2099.2354	0.23542625	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	101.07	100.95	3	6.6862E-07	91523	160511_QHF_FH_JSI12i_1	97.271	93.551			0.80353	0.82914	25.609	8	1	Median	1.1015	0.91995	36.781	2	0	Median	0.69289	0.82914	15.514	2	0	Median	0.79195	0.79019	42.022	2	0	Median	0.79516	0.86542	31.319	2	1	Median	1167500000	615400000	552100000	156190000	70781000	85410000	306650000	175320000	131330000	359780000	191840000	167950000	344870000	177460000	167410000	35031	1306	33155	215800;215801;215802;215803;215804;215805;215806;215807	291151;291152;291153;291154;291155;291156;291157;291158;291159;291160;291161;291162	291154			12	
LVNQWIK	1	Unmodified	899.52289	0.52288749	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4	4.93	1	4	1						1	1	1	4	1	43.874	41.881	2	0.0061548	36006	160511_QHF_FH_JSI12i_2	92.191	51.618			0.73105	0.79253	53.885	7	2	Median	0.90205	0.79253	NaN	1	0	Median	0.73093	0.87741	NaN	1	0	Median	0.5568	0.55064	74.179	4	2	Median	0.8415	0.92706	NaN	1	0	Median	728780000	416650000	312130000	103350000	56755000	46594000	148310000	95358000	52957000	297730000	158820000	138910000	179390000	105720000	73668000	35032	1557	33156	215808;215809;215810;215811;215812;215813;215814	291163;291164;291165	291164			3	
LVNSQGQLR	0	Unmodified	1013.5618	0.56179219	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	14.335	13.798	2	0.0088923	10898	160511_QHF_FH_JSI11i_2	51.736	19.594			0.8048	0.85135	34.116	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0831	1.0836	NaN	1	0	Median	0.598	0.66887	NaN	1	0	Median	190630000	103950000	86686000	0	0	0	0	0	0	119670000	65122000	54547000	70964000	38825000	32139000	35033	4529	33157	215815;215816	291166;291167	291167			2	
LVNTGLLTLR	0	Unmodified	1098.6761	0.67609367	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	66.062	65.202	2	0.00026217	57903	160511_QHF_FH_JSI11i_3	79.986	45.178			1.0357	0.98569	37.029	8	1	Median	1.2712	1.0845	5.5219	2	0	Median	0.717	0.86446	55.549	2	1	Median	0.95716	0.91702	2.3861	2	0	Median	0.64106	0.6656	63.356	2	0	Median	627160000	318670000	308480000	124940000	59002000	65935000	149630000	88322000	61308000	190130000	91348000	98782000	162460000	80003000	82460000	35034	4551	33158	215817;215818;215819;215820;215821;215822;215823;215824	291168;291169;291170;291171;291172;291173;291174;291175;291176	291168			9	
LVNTINPGAR	0	Unmodified	1053.5931	0.59309232	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	25.723	25.169	2	1.0537E-05	22092	160511_QHF_FH_JSI10i_1	104.44	91.4			1.0185	1.0844	11.689	8	0	Median	1.2856	1.1198	NaN	1	0	Median	0.91659	1.1092	7.742	2	0	Median	0.96185	0.92043	16.091	2	0	Median	1.0416	1.1671	8.0248	3	0	Plateau	744800000	374930000	369860000	105200000	48116000	57082000	188650000	97218000	91432000	221840000	116680000	105160000	229100000	112910000	116190000	35035	3904	33159	215825;215826;215827;215828;215829;215830;215831;215832;215833	291177;291178;291179;291180;291181;291182;291183;291184;291185	291180			9	
LVNTLNTIPSLGQSPGPVVVSNNSSAHGSQR	0	Unmodified	3129.6167	0.6166879	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			74.065	72.611	3;4	1.1072E-22	60913	160511_QHF_FH_JSI10i_3	104.51	98.35			1.1711	1.1506	5.1009	4	0	Median	1.4524	1.1842	6.3211	2	0	Median	0.9869	1.1336	4.3659	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85016000	41218000	43798000	45838000	19596000	26242000	39178000	21622000	17556000	0	0	0	0	0	0	35036	3260	33160	215834;215835;215836;215837	291186;291187;291188;291189;291190;291191;291192;291193	291188			8	
LVNTQDMSASQVDVAVK	1	Unmodified	1803.9037	0.90366336	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	54.245	53.846	2	6.9955E-08	48566	160511_QHF_FH_JSI10i_1	130.2	101.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12448000	12448000	0	0	0	0	12448000	12448000	0	0	0	0	0	0	0	35037	1822	33161	215838;215839;215840;215841	291194;291195;291196;291197	291195			4	
LVNTTITPEPEPKPQPNSR	1	Unmodified	2117.1117	0.1116823	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							2		1	1	37.966	37.403	3	0.0086248	32860	160511_QHF_FH_JSI11i_3	39.905	36.064			1.133	1.0717	12.248	3	2	Plateau	1.3109	1.1625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.133	1.0717	NaN	1	0	Median	1.3218	1.3634	NaN	1	1	Median	62764000	33870000	28894000	24160000	13264000	10896000	0	0	0	23631000	10029000	13602000	14973000	10577000	4395800	35038	3336	33162	215842;215843;215844;215845	291198;291199;291200;291201;291202	291199			5	
LVNWSCTLNSAISDIEVDKK	2	Unmodified	2291.1467	0.14674718	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	3	1	1	97.05	96.742	3	2.7556E-33	80280	160511_QHF_FH_JSI10i_3	184.7	181.31			0.85068	0.86253	32.474	6	1	Median	1.0295	0.85918	NaN	1	0	Median	0.69649	0.8659	48.28	3	1	Median	0.80023	0.73851	NaN	1	0	Median	0.90432	1.0241	NaN	1	0	Median	386710000	198070000	188640000	12672000	5677600	6994000	166550000	92050000	74500000	135890000	59196000	76696000	71601000	41149000	30453000	35039	1283	33163	215846;215847;215848;215849;215850;215851	291203;291204;291205;291206;291207;291208;291209;291210	291206			7	
LVNYYSCSYWK	1	Unmodified	1481.6649	0.66493664	3016	Q66K14;Q6ZT07	TBC1D9B;TBC1D9	TBC1 domain family member 9B;TBC1 domain family member 9	yes	no	0	0	0	0			By MS/MS		16	0									1			1		67.453	57.848	2	0.00010417	31340	160513_QHF_FH_JSI11Kac_6	95.573	81.804			0.50191	0.47512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50191	0.47512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9956500	6959900	2996600	0	0	0	0	0	0	9956500	6959900	2996600	0	0	0	35040	3016	33164	215852	291211	291211			1	
LVPADNEK	1	Unmodified	884.46035	0.46034682	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	14.036	11.987	2	0.002353	10042	160511_QHF_FH_JSI11i_1	89.296	59.92			0.25191	0.28004	20.011	4	4	Median	NaN	NaN	NaN	0	0	Median	0.25976	0.30052	NaN	1	1	Median	0.26633	0.25991	32.342	2	2	Median	0.2443	0.26095	NaN	1	1	Median	3736200000	3006100000	730140000	0	0	0	1160800000	931300000	229470000	1160300000	902040000	258280000	1415100000	1172700000	242390000	35041	970	33165	215853;215854;215855;215856;215857	291212;291213;291214;291215;291216	291212			5	
LVPDLLAIVQR	0	Unmodified	1235.7602	0.76015765	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	100.89	100.81	2	0.00019001	88522	160511_QHF_FH_JSI11i_2	81.594	53.852			1.3926	1.2231	35.915	5	0	Median	1.3926	1.2231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0162	0.997	48.739	2	0	Median	1.1077	1.1572	49.266	2	0	Median	191930000	81908000	110020000	15381000	6276900	9104100	0	0	0	95865000	41643000	54222000	80680000	33988000	46692000	35042	4733	33166	215858;215859;215860;215861;215862	291217;291218;291219;291220;291221;291222	291220			6	
LVPDLLAIVQRK	1	Unmodified	1363.8551	0.85512067	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		89.942	89.416	3	0.014381	74810	160511_QHF_FH_JSI10i_3	37.426	16.196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35043	4733	33167	215863;215864	291223;291224	291224			2	
LVPEAVGDQK	1	Unmodified	1054.5659	0.56587452	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	1	2		28.498	27.843	2	0.0015262	24592	160511_QHF_FH_JSI11i_1	76.827	42.574			1.0179	0.82964	49.116	5	5	Median	1.4772	1.205	52.789	2	2	Median	0.49813	0.59381	NaN	1	1	Median	1.2553	1.2005	53.64	2	2	Median	NaN	NaN	NaN	0	0	Median	701090000	315660000	385430000	263560000	110300000	153250000	132300000	71450000	60851000	305240000	133910000	171330000	0	0	0	35044	1665	33168	215865;215866;215867;215868;215869	291225;291226;291227;291228;291229	291226			5	
LVPEEETTASENTEITSER	0	Unmodified	2133.9914	0.99135197	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	44.483	43.996	2	7.6554E-11	39779	160511_QHF_FH_JSI11i_1	106.13	94.337			1.4125	1.4011	56.575	3	3	Median	NaN	NaN	NaN	0	0	Median	0.4756	0.54112	NaN	1	1	Median	1.4527	1.4011	NaN	1	1	Median	1.4125	1.48	NaN	1	1	Median	74211000	33681000	40530000	0	0	0	24398000	18210000	6187800	28640000	9185400	19455000	21173000	6286200	14887000	35045	4253	33169	215870;215871;215872;215873;215874	291230;291231;291232;291233;291234	291231			5	
LVPENFQDFHSK	1	Unmodified	1459.7096	0.70957864	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	48.637	47.771	3	1.3389E-05	40703	160511_QHF_FH_JSI12i_3	82.069	76.99			1.2289	1.2653	43.138	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2822	1.5092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86921	0.91727	45.486	2	0	Median	97003000	46782000	50220000	0	0	0	16380000	7393500	8986200	0	0	0	80623000	39389000	41234000	35046	1257	33170	215875;215876;215877;215878;215879	291235;291236;291237;291238;291239	291237			5	
LVPESLKK	2	Unmodified	912.56442	0.56441796	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								2		1	22.688	21.863	3	0.013607	17873	160511_QHF_FH_JSI12i_3	43.442	12.878			0.37873	0.37983	120.95	3	3	Median	NaN	NaN	NaN	0	0	Median	0.84328	0.99792	151.78	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37873	0.37983	NaN	1	1	Median	355340000	176430000	178910000	0	0	0	160320000	81720000	78603000	0	0	0	195010000	94709000	100310000	35047	3494	33171	215880;215881;215882	291240;291241;291242	291242			3	
LVPFDHAESTYGLYR	0	Unmodified	1766.8628	0.86278482	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.55		9	4						1	2	2	5	5	66.45	65.128	2;3	5.6781E-23	57772	160511_QHF_FH_JSI10i_2	182.57	171.31			1.2311	1.164	16.009	13	0	Median	1.2502	1.0664	16.916	2	0	Median	0.81706	1.0183	6.4677	2	0	Median	1.2311	1.164	13.144	5	0	Median	1.3141	1.3576	20.055	4	0	Median	1991800000	897690000	1094100000	235050000	87965000	147090000	347340000	178230000	169110000	871040000	405530000	465510000	538330000	225960000	312370000	35048	677	33172	215883;215884;215885;215886;215887;215888;215889;215890;215891;215892;215893;215894;215895;215896	291243;291244;291245;291246;291247;291248;291249;291250;291251;291252;291253;291254;291255;291256;291257;291258;291259;291260;291261;291262;291263;291264;291265;291266;291267;291268;291269;291270	291267			28	
LVPFLDALK	1	Unmodified	1014.6114	0.61136815	3113	Q6P9B9	INTS5	Integrator complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	94.291	93.758	2	0.0031216	83081	160511_QHF_FH_JSI10i_2	60.59	41.113			1.2824	1.2977	27.648	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6167	1.5779	NaN	1	1	Median	1.0172	1.0672	NaN	1	1	Median	17549000	8658000	8891300	0	0	0	0	0	0	10308000	5530700	4777800	7240900	3127300	4113600	35049	3113	33173	215897;215898;215899	291271;291272;291273	291273			3	
LVPFLKK	2	Unmodified	843.55821	0.55821037	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	45.367	44.232	3	0.0081942	36915	160511_QHF_FH_JSI10i_3	47.067	10.046			0.53502	0.4436	19.586	3	3	Plateau	0.55522	0.4436	NaN	1	1	Median	0.4947	0.56392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4079	0.38252	NaN	1	1	Median	116370000	73701000	42667000	48582000	26865000	21718000	35673000	25987000	9686500	0	0	0	32113000	20850000	11263000	35050	1069;3467	33174	215900;215901;215902;215903;215904;215905	291274;291275;291276;291277;291278;291279	291276			6	
LVPFLVFVVVPFMEFLLPVAVK	1	Unmodified	2502.4728	0.47281975	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			107.21	101.49	3	0.0002914	60148	160513_QHF_FH_JSI10Kac_6	94.387	86.765			0.36901	0.4323	6.4274	2	2	Median	NaN	NaN	NaN	0	0	Median	0.36901	0.4323	6.4274	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97675000	58594000	39081000	0	0	0	97675000	58594000	39081000	0	0	0	0	0	0	35051	655	33175	215906;215907	291280;291281	291281			2	
LVPFLWLK	1	Unmodified	1014.6266	0.62662428	2322	Q12899	TRIM26	Tripartite motif-containing protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	96.777	92.573	2	0.0016919	90418	160511_QHF_FH_JSI11i_3	86.086	52.348			0.95769	0.91395	18.568	8	0	Median	1.0963	0.91395	8.8509	2	0	Median	0.77432	0.8953	14.052	2	0	Median	0.85148	0.79964	9.849	2	0	Median	1.126	1.1712	22.108	2	0	Median	811680000	400780000	410900000	176820000	79021000	97800000	205200000	119050000	86148000	209550000	100420000	109130000	220110000	102280000	117830000	35052	2322	33176	215908;215909;215910;215911;215912;215913;215914;215915	291282;291283;291284;291285;291286;291287;291288;291289;291290	291283			9	
LVPFWSWLQMGK	1	Unmodified	1490.7744	0.77442751	5706	Q9Y673	ALG5	Dolichyl-phosphate beta-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	99.796	95.548	2	1.0515E-15	89143	160511_QHF_FH_JSI12i_3	155.42	96.437			0.62051	0.63959	26.329	8	3	Median	0.77232	0.65655	43.578	2	1	Median	0.53697	0.63274	38.896	2	1	Median	0.77661	0.7311	33.531	2	1	Median	0.6201	0.63959	7.3476	2	0	Median	1715300000	979360000	735980000	335970000	165150000	170820000	576740000	358370000	218370000	483520000	256220000	227300000	319120000	199620000	119500000	35053	5706	33177	215916;215917;215918;215919;215920;215921;215922;215923	291291;291292;291293;291294;291295;291296;291297;291298;291299	291297			9	
LVPFWSWLQMGK	1	Oxidation (M)	1506.7693	0.76934213	5706	Q9Y673	ALG5	Dolichyl-phosphate beta-glucosyltransferase	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		95.77	86.371	2	0.0035848	48797	160513_QHF_FH_JSI11Kac_6	73.067	47.128			0.71479	0.70336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71479	0.70336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25550000	14988000	10562000	0	0	0	0	0	0	25550000	14988000	10562000	0	0	0	35054	5706	33177	215924	291300	291300		2735	1	
LVPGGGATEIELAK	1	Unmodified	1353.7504	0.75038083	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.828	4	4	5							3	4	3	3	57.675	56.813	2	0.00022664	46465	160511_QHF_FH_JSI9i_3	87.184	63.154			0.85166	0.84074	23.982	13	4	Median	1.0139	0.83641	22.21	3	0	Median	0.71073	0.85562	40.838	4	2	Median	0.80107	0.84432	6.068	3	1	Plateau	0.8189	0.87806	11.071	3	1	Plateau	3183400000	1774200000	1409200000	574250000	278180000	296070000	802650000	464180000	338470000	1102200000	651030000	451190000	704270000	380820000	323450000	35055	1721	33178	215925;215926;215927;215928;215929;215930;215931;215932;215933;215934;215935;215936;215937	291301;291302;291303;291304;291305;291306;291307;291308;291309;291310;291311;291312;291313;291314;291315;291316;291317;291318;291319;291320	291312			20	
LVPGLFK	1	Unmodified	772.48471	0.48471107	1423	P35226	BMI1	Polycomb complex protein BMI-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		59.056	57.907	2	0.022022	48552	160511_QHF_FH_JSI10i_3	59.641	23.054			6.2336	1.9765	77.165	4	4	Linear	2.6191	2.1359	NaN	1	1	Median	0.88313	1.0426	116.84	2	2	Median	1.9549	1.8289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	408770000	191080000	217690000	121970000	44235000	77737000	182040000	94934000	87106000	104760000	51915000	52844000	0	0	0	35056	1423	33179	215938;215939;215940;215941	291321;291322;291323;291324	291323			4	
LVPGPVFGSK	1	Unmodified	999.57532	0.57531699	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							4	3	3	3	52.845	51.938	2	0.00012467	45758	160511_QHF_FH_JSI11i_3	84.213	23.251			1.1562	1.2142	22.59	8	4	Median	1.7303	1.4366	29.724	2	1	Median	1.1562	1.357	9.7844	2	1	Median	1.2862	1.263	40.656	2	1	Median	1.0269	1.0889	8.871	2	1	Median	4188300000	1934300000	2254000000	585680000	221030000	364650000	733700000	378750000	354950000	1092200000	511780000	580380000	1776800000	822760000	954050000	35057	2326	33180	215942;215943;215944;215945;215946;215947;215948;215949;215950;215951;215952;215953;215954	291325;291326;291327;291328;291329;291330;291331;291332;291333;291334;291335;291336;291337;291338;291339;291340;291341;291342	291325			18	
LVPGWTK	1	Unmodified	799.45922	0.4592246	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.355	40.355	2	0.044146	35462	160511_QHF_FH_JSI11i_3	48.756	8.6525			0.75682	0.69639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75682	0.69639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	137710000	65843000	71867000	0	0	0	0	0	0	137710000	65843000	71867000	0	0	0	35058	1635	33181	215955	291343	291343			1	
LVPHNESAWNYLK	1	Unmodified	1569.794	0.79397698	1652	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	2	3	3	54.437	53.84	2;3	2.1698E-11	47576	160511_QHF_FH_JSI11i_3	132.47	118.51			0.96002	0.97303	26.985	9	5	Median	1.1359	0.92516	NaN	1	0	Median	0.71851	0.85163	27.887	2	1	Median	0.96002	0.89509	28.345	3	2	Median	1.2394	1.2797	23.494	3	2	Median	1000600000	418290000	582300000	43151000	24405000	18746000	96325000	54927000	41398000	299900000	139490000	160410000	561200000	199470000	361740000	35059	1652	33182	215956;215957;215958;215959;215960;215961;215962;215963;215964	291344;291345;291346;291347;291348;291349;291350;291351;291352	291344			9	
LVPIDTPNHLQR	0	Unmodified	1401.7728	0.7728476	2946	Q5T447	HECTD3	E3 ubiquitin-protein ligase HECTD3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	41.494	41.389	3	0.00017802	36432	160511_QHF_FH_JSI11i_3	66.267	43.239			0.47964	0.47525	0.5379	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50112	0.47706	NaN	1	1	Median	0.45907	0.47345	NaN	1	1	Median	83472000	50267000	33205000	0	0	0	0	0	0	36840000	22489000	14351000	46632000	27777000	18854000	35060	2946	33183	215965;215966;215967	291353;291354;291355;291356	291355			4	
LVPLDYGEDDK	1	Unmodified	1262.603	0.60304789	1679	P49756	RBM25	RNA-binding protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.259	50.585	2	0.00030372	45835	160511_QHF_FH_JSI11i_1	76.282	57.304			1.1281	1.0841	28.154	4	1	Median	1.4534	1.1726	NaN	1	0	Median	0.57944	0.68321	NaN	1	1	Median	1.0336	1.0024	NaN	1	0	Median	1.2312	1.2973	NaN	1	0	Median	930080000	377790000	552290000	179580000	69204000	110370000	215380000	132920000	82460000	288030000	77253000	210780000	247090000	98412000	148680000	35061	1679	33184	215968;215969;215970;215971	291357;291358;291359;291360	291357			4	
LVPLKETIK	2	Acetyl (K)	1081.6747	0.67469669	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	68.439	57.654	2	0.029299	28840	160513_QHF_FH_JSI12Kac_5	48.283	31.507			0.23194	0.22869	79.55	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69577	0.8245	NaN	1	0	Median	0.20046	0.19761	NaN	1	0	Median	0.67677	0.74044	NaN	1	0	Median	39251000	25470000	13781000	0	0	0	9830500	5484100	4346400	16975000	13127000	3848100	12446000	6859300	5586700	35062	851	33185	215972;215973;215974	291361;291362	291361			2	
LVPLLDTGDIIIDGGNSEYR	0	Unmodified	2159.111	0.1110136	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		101.19	101.13	3	0.0039093	91812	160511_QHF_FH_JSI11i_1	53.554	45.059			1.1165	1.1778	1.4354	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9981	1.1659	NaN	1	0	Median	1.2489	1.1898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	213880000	108410000	105470000	0	0	0	106680000	56599000	50085000	107190000	51809000	55384000	0	0	0	35063	1764	33186	215975;215976	291363	291363			0	
LVPLLDTGDIIIDGGNSEYRDTTR	0	Unmodified	2632.3344	0.33442461	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	94.373	94.371	3	1.1338E-08	84285	160511_QHF_FH_JSI11i_3	77.287	73.692			1.0938	1.0498	4.2358	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1698	1.0817	NaN	1	0	Median	1.0227	1.0188	NaN	1	0	Median	269910000	136990000	132920000	0	0	0	0	0	0	113870000	54128000	59740000	156040000	82860000	73178000	35064	1764	33187	215977;215978	291364;291365	291365			2	
LVPLLLEDGGEAPAALEAALEEK	1	Unmodified	2347.2523	0.25225811	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	102.06	101.96	3	6.1089E-17	87853	160511_QHF_FH_JSI12i_2	130.09	118.46			0.91889	1.0158	20.45	5	1	Median	1.315	1.0975	NaN	1	0	Median	0.83768	1.001	38.404	2	1	Median	0.87015	0.90086	NaN	1	0	Median	0.91889	1.0158	NaN	1	0	Median	2679000000	1269200000	1409800000	586570000	245750000	340820000	719340000	353530000	365800000	768020000	372560000	395460000	605080000	297390000	307690000	35065	2517	33188	215979;215980;215981;215982;215983;215984;215985	291366;291367;291368;291369;291370;291371;291372;291373;291374	291366			9	
LVPLNQESVEER	0	Unmodified	1411.7307	0.73070802	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	44.697	41.951	2	5.0866E-07	36208	160511_QHF_FH_JSI11i_2	150.61	120.04			1.0703	1.0693	13.125	10	0	Median	1.2282	1.0192	8.7951	2	0	Median	0.93362	1.0597	18.944	3	0	Median	1.1572	1.1468	8.6087	2	0	Median	0.92988	0.99706	12.464	3	0	Median	2039600000	1036500000	1003100000	390340000	180480000	209860000	619250000	334110000	285140000	628960000	315510000	313450000	401090000	206400000	194690000	35066	3503	33189	215986;215987;215988;215989;215990;215991;215992;215993;215994;215995	291375;291376;291377;291378;291379;291380;291381;291382;291383;291384;291385;291386;291387;291388;291389;291390;291391;291392	291389			18	
LVPLYAVVSEEPIYIVTEFMSK	1	Unmodified	2526.3332	0.33315096	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		104.17	104.07	3	3.9911E-07	91798	160511_QHF_FH_JSI11i_2	79.568	72.616			1.1022	1.1121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1022	1.1121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23803000	12271000	11532000	0	0	0	0	0	0	23803000	12271000	11532000	0	0	0	35067	884	33190	215996;215997	291393;291394;291395	291394			3	
LVPMAAHEASSLYSEEK	1	Unmodified	1860.8928	0.89276432	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.922	51.686	3	1.5549E-06	44285	160511_QHF_FH_JSI12i_3	109.42	99.044			0.26434	0.26329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26434	0.26329	NaN	1	1	Median	214540000	170800000	43743000	0	0	0	0	0	0	0	0	0	214540000	170800000	43743000	35068	4703	33191	215998	291396	291396			1	
LVPMTVFHK	1	Unmodified	1070.5947	0.59467223	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	52.285	51.44	2;3	5.6329E-07	43096	160511_QHF_FH_JSI10i_3	112.84	98.168			0.88611	0.89407	25.427	8	2	Median	1.2154	0.97613	1.2647	2	0	Median	0.67526	0.78042	56.257	2	1	Median	0.79554	0.7338	18.866	2	1	Median	0.87954	0.89407	0.86736	2	0	Median	1148200000	586790000	561430000	290350000	129980000	160370000	233380000	129340000	104040000	216260000	116000000	100260000	408230000	211460000	196760000	35069	2835	33192	215999;216000;216001;216002;216003;216004;216005;216006	291397;291398;291399;291400;291401;291402;291403;291404;291405;291406;291407;291408;291409;291410	291401			14	
LVPNMTPEVVGEQVTSYLTK	1	Unmodified	2204.1399	0.13987088	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.29	101.2	3	0.0068087	91906	160511_QHF_FH_JSI11i_1	37.091	28.044			0.61843	0.60432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61843	0.60432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83211000	53201000	30010000	0	0	0	0	0	0	83211000	53201000	30010000	0	0	0	35070	4160	33193	216007	291411	291411			1	
LVPQLVR	0	Unmodified	823.52797	0.52797287	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	44.867	43.993	2	0.002611	37481	160511_QHF_FH_JSI12i_3	109.88	45.104			0.97834	1.0332	12.945	5	1	Median	1.667	1.3718	NaN	1	0	Median	0.85788	1.0309	0.31505	2	1	Median	1.2069	1.1413	NaN	1	0	Median	0.97834	1.002	NaN	1	0	Median	1094200000	533640000	560530000	139750000	54488000	85260000	304750000	186110000	118640000	256300000	111660000	144640000	393380000	181380000	212000000	35071	369	33194	216008;216009;216010;216011;216012	291412;291413;291414;291415;291416	291416			5	
LVPQQLAH	0	Unmodified	904.51305	0.51305109	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.32	4	4	2				3	4		4	4	5	4	37.111	32.542	2	0.0020084	18639	160513_QHF_FH_JSI10Kac_4	93.885	87.123			0.95955	0.97202	23.531	17	1	Median	1.065	0.87216	47.336	4	1	Median	0.7707	0.92099	12.31	4	0	Median	1.0072	0.97507	11.387	5	0	Median	0.93414	1.0452	17.277	4	0	Median	4143700000	2125800000	2017800000	779340000	360560000	418770000	1063400000	586780000	476610000	1279500000	661070000	618380000	1021500000	517430000	504050000	35072	974	33195	216013;216014;216015;216016;216017;216018;216019;216020;216021;216022;216023;216024;216025;216026;216027;216028;216029	291417;291418;291419;291420;291421;291422;291423;291424;291425;291426;291427;291428;291429;291430;291431;291432;291433;291434;291435;291436;291437;291438;291439;291440	291426			24	
LVPSQAEIEAR	0	Unmodified	1211.651	0.65100113	4148	Q96K21	ZFYVE19	Abscission/NoCut checkpoint regulator	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.185	39.272	2	0.00088636	33621	160511_QHF_FH_JSI11i_2	67.704	59.123			0.93979	0.97953	23.319	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1694	1.1551	NaN	1	0	Median	0.75528	0.83063	NaN	1	0	Median	88162000	52618000	35544000	0	0	0	0	0	0	54642000	32350000	22291000	33520000	20267000	13252000	35073	4148	33196	216030;216031	291441;291442;291443	291443			3	
LVPSQEETK	1	Unmodified	1029.5342	0.53424004	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.89	4	1				2	1			1	3	3	1	17.556	14.425	2	0.00055425	12064	160511_QHF_FH_JSI9i_1	78.516	53.622			1.0887	1.0182	20.273	8	1	Median	1.184	0.98007	NaN	1	0	Median	0.82671	0.9776	26.332	3	1	Median	1.0619	1.0579	25.247	3	0	Median	1.1162	1.184	NaN	1	0	Median	1686600000	864990000	821590000	531370000	252910000	278460000	368240000	212300000	155950000	358000000	196360000	161640000	428970000	203420000	225550000	35074	1649	33197	216032;216033;216034;216035;216036;216037;216038;216039	291444;291445;291446;291447;291448;291449;291450;291451;291452;291453	291452			10	
LVPSVNGVR	0	Unmodified	939.55016	0.55016488	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	36.931	36.083	2	3.4939E-05	30657	160511_QHF_FH_JSI12i_3	100.19	55.577			1.0658	1.1555	28.884	6	0	Median	1.0848	0.90547	40.383	2	0	Median	0.92608	1.1238	16.556	2	0	Median	1.7411	1.621	NaN	1	0	Median	1.0781	1.1084	NaN	1	0	Median	877360000	441380000	435980000	145850000	72203000	73646000	226020000	128080000	97938000	223850000	110710000	113140000	281640000	130380000	151250000	35075	1004	33198	216040;216041;216042;216043;216044;216045	291454;291455;291456;291457;291458;291459;291460	291460			7	
LVPTGLDFGQEGFTR	0	Unmodified	1635.8257	0.82567103	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							3	4	2	3	80.939	80.148	2;3	1.9766E-11	69224	160511_QHF_FH_JSI12i_2	104.87	64.515			1.0211	1.0265	11.293	11	2	Median	1.0223	0.96415	5.9413	3	0	Plateau	0.86112	1.0213	9.9444	4	2	Median	1.1432	1.1437	3.3868	2	0	Median	1.068	1.1538	16.528	2	0	Median	727850000	361420000	366420000	175680000	77757000	97927000	216320000	122670000	93650000	266400000	128070000	138330000	69438000	32927000	36511000	35076	1580	33199	216046;216047;216048;216049;216050;216051;216052;216053;216054;216055;216056;216057	291461;291462;291463;291464;291465;291466;291467;291468;291469;291470;291471;291472;291473;291474;291475;291476;291477;291478;291479;291480	291463			20	
LVPTVKEK	2	Unmodified	912.56442	0.56441796	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		21.874	21.874	3	0.053381	18318	160511_QHF_FH_JSI11i_3	31.074	1.4067			0.46135	0.43933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46135	0.43933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127760000	62883000	64873000	0	0	0	0	0	0	127760000	62883000	64873000	0	0	0	35077	302	33200	216058	291481	291481			1	
LVPVGYGIK	1	Unmodified	944.5695	0.56950333	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.64	4	4	2				3	3	3	4	6	4	5	54.966	49.599	2	2.3507E-05	42958	160511_QHF_FH_JSI11i_2	105.39	35.958			0.8973	0.91487	25.972	19	3	Median	1.1873	0.96597	43.626	4	2	Median	0.96899	1.1506	28.526	6	1	Median	1.0154	0.98959	11.348	4	0	Median	0.80813	0.89276	3.6805	5	0	Median	9843100000	4828200000	5014900000	1903400000	882990000	1020400000	2875400000	1569200000	1306200000	2958900000	1351200000	1607700000	2105400000	1024800000	1080600000	35078	1245	33201	216059;216060;216061;216062;216063;216064;216065;216066;216067;216068;216069;216070;216071;216072;216073;216074;216075;216076;216077	291482;291483;291484;291485;291486;291487;291488;291489;291490;291491;291492;291493;291494;291495;291496;291497;291498;291499;291500;291501;291502;291503;291504;291505;291506;291507;291508;291509;291510;291511;291512;291513	291501			32	
LVPVGYGIKK	2	Unmodified	1072.6645	0.66446635	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			5							1		1	3	37.716	37.553	2;3	0.00081045	30649	160511_QHF_FH_JSI9i_3	61.65	43.382			0.84239	0.83694	8.2694	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84239	0.83694	8.2694	2	2	Median	379170000	178810000	200360000	0	0	0	0	0	0	0	0	0	379170000	178810000	200360000	35079	1245	33202	216078;216079;216080;216081;216082	291514;291515;291516;291517;291518	291515			5	
LVPVGYGIKK	2	Acetyl (K)	1114.675	0.67503104	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.831							3	3	4	1	3	3	3	64.244	54.067	2	0.011987	29906	160513_QHF_FH_JSI12Kac_4	81.548	62.454			0.88314	0.91298	15.75	10	0	Median	0.9148	0.77828	NaN	1	0	Median	0.67767	0.79414	9.7853	3	0	Median	0.89721	0.90091	9.9259	3	0	Median	0.90025	0.95852	17.591	3	0	Median	262200000	141620000	120580000	26248000	11097000	15151000	74326000	46251000	28075000	70357000	39285000	31072000	91267000	44984000	46284000	35080	1245	33202	216083;216084;216085;216086;216087;216088;216089;216090;216091;216092	291519;291520;291521;291522;291523;291524;291525;291526;291527;291528	291521	1140		10	
LVPVGYGIR	0	Unmodified	972.57565	0.57565135	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	2	2	53.972	49.473	2	4.9969E-05	42471	160511_QHF_FH_JSI12i_3	98.133	20.385			1.0767	1.2522	20.444	7	2	Median	1.8212	1.4391	NaN	1	1	Median	1.1166	1.3148	6.8997	2	1	Median	1.2457	1.1627	43.831	2	0	Median	1.0648	1.1333	2.5569	2	0	Median	6805700000	3374700000	3431000000	979420000	348310000	631100000	1252800000	584280000	668550000	2433200000	1300900000	1132300000	2140200000	1141200000	999060000	35081	1327	33203	216093;216094;216095;216096;216097;216098;216099	291529;291530;291531;291532;291533;291534;291535;291536;291537;291538;291539	291537			11	
LVPVGYGIRK	1	Unmodified	1100.6706	0.67061436	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	9.5	6.5			3						3	1	3	1	1	42.785	37.713	2;3	0.00018852	31439	160511_QHF_FH_JSI10i_3	82.287	50.908			1.0883	1.088	23.334	6	3	Median	0.97551	0.83035	NaN	1	0	Median	1.214	1.4112	25.53	3	2	Median	1.2496	1.1871	NaN	1	1	Median	0.8968	0.99722	NaN	1	0	Median	646840000	330290000	316560000	17295000	8437400	8857600	453830000	234480000	219340000	165500000	80721000	84777000	10222000	6645300	3577100	35082	1327	33204	216100;216101;216102;216103;216104;216105	291540;291541;291542;291543;291544;291545	291541			6	
LVPVHYDETEAEREK	1	Unmodified	1813.8846	0.88464248	3638	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	30.814	30.771	3;4	0.00010944	25867	160511_QHF_FH_JSI12i_3	71.344	61.005			1.2284	1.165	30.008	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3196	1.2215	NaN	1	0	Median	0.79832	0.7994	24.55	2	1	Median	176290000	98897000	77390000	0	0	0	0	0	0	86055000	48460000	37595000	90231000	50437000	39795000	35083	3638	33205	216106;216107;216108;216109	291546;291547;291548;291549	291547			4	
LVPVLSAK	1	Unmodified	825.53239	0.53238955	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	45.985	45.1	2	0.0048164	38708	160511_QHF_FH_JSI12i_2	75.109	33.607			1.0036	0.99125	10.143	7	3	Median	1.3243	1.0787	17.822	2	1	Median	0.77071	0.90934	NaN	1	0	Median	0.99132	0.99076	4.2135	2	1	Median	0.98469	1.046	7.6082	2	1	Median	3459900000	2045800000	1414100000	423500000	239390000	184110000	192630000	89498000	103130000	1643300000	982820000	660440000	1200500000	734120000	466390000	35084	1471	33206	216110;216111;216112;216113;216114;216115;216116	291550;291551;291552;291553;291554	291551			5	
LVPVLYHVYSFR	0	Unmodified	1491.8238	0.82382054	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	79.861	71.215	2;3	1.9166E-14	38869	160513_QHF_FH_JSI11Kac_6	116.01	94.454			1.2382	1.1239	16.035	7	0	Median	1.2741	1.0829	5.2472	2	0	Median	1.0467	1.2444	NaN	1	0	Median	0.96795	0.93349	7.522	2	0	Median	1.2551	1.3406	4.075	2	0	Median	4371400000	2135300000	2236100000	1028900000	391320000	637590000	2020900000	1143600000	877270000	786560000	364980000	421580000	535080000	235440000	299630000	35085	128	33207	216117;216118;216119;216120;216121;216122;216123	291555;291556;291557;291558;291559;291560;291561;291562;291563;291564;291565;291566;291567	291555			13	
LVPYGNHSYLESLTDK	1	Unmodified	1834.9101	0.91012895	2537	Q14457	BECN1	Beclin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	63.602	63.412	3	3.0349E-05	56298	160511_QHF_FH_JSI11i_3	82.59	69.798			1.0904	1.0082	36.225	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0904	1.0082	NaN	1	0	Median	0.8921	0.89897	50.367	2	2	Median	213450000	104360000	109100000	0	0	0	0	0	0	72463000	32232000	40232000	140990000	72124000	68867000	35086	2537	33208	216124;216125;216126	291568;291569;291570;291571	291568			4	
LVQAAQMLQSDPYSVPAR	0	Unmodified	1973.004	0.0040461055	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	8	7								4	1	4	6	68.922	68.136	2;3	4.2538E-66	62155	160511_QHF_FH_JSI12i_1	229.32	187.78			1.1019	1.0562	26.285	13	3	Median	1.2309	1.0101	21.29	3	1	Median	0.91294	1.0562	NaN	1	0	Median	1.119	1.0918	5.3721	4	0	Median	0.95006	0.98138	40.866	5	2	Median	1213100000	614730000	598340000	181440000	93650000	87794000	166200000	92182000	74020000	544600000	259000000	285600000	320820000	169890000	150920000	35087	1139	33209	216127;216128;216129;216130;216131;216132;216133;216134;216135;216136;216137;216138;216139;216140;216141	291572;291573;291574;291575;291576;291577;291578;291579;291580;291581;291582;291583;291584;291585;291586;291587;291588;291589;291590;291591;291592;291593;291594;291595	291582			23	
LVQAAQMLQSDPYSVPARDYLIDGSR	0	Unmodified	2892.444	0.44399183	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	3	1	2	85.932	85.353	3;4	1.2381E-35	75890	160511_QHF_FH_JSI10i_2	162.01	149.93			1.215	1.1929	19.302	7	2	Median	1.3556	1.1525	NaN	1	0	Median	1.215	1.4833	31.224	3	1	Plateau	1.3257	1.2608	NaN	1	0	Median	0.99955	1.1022	11.18	2	1	Median	504990000	196880000	308110000	89817000	32778000	57039000	221210000	87120000	134090000	108050000	40336000	67718000	85908000	36646000	49262000	35088	1139	33210	216142;216143;216144;216145;216146;216147;216148	291596;291597;291598;291599;291600;291601;291602;291603;291604;291605;291606;291607	291604			12	
LVQAEYWHDPIK	1	Unmodified	1497.7616	0.76161421	1719	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	54.523	53.375	2;3	4.8453E-06	46064	160511_QHF_FH_JSI11i_2	99.752	75.37			1.0883	1.2509	25.895	2	1	Median	NaN	NaN	NaN	0	0	Median	0.87902	1.0416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3473	1.5022	NaN	1	0	Median	113840000	61366000	52474000	0	0	0	15663000	11857000	3806300	0	0	0	98176000	49509000	48667000	35089	1719	33211	216149;216150;216151	291608;291609;291610	291609			2	
LVQAFQFTDK	1	Unmodified	1195.6237	0.62372375	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.94	6.3	5	8	6			4	4	5	4	8	9	9	10	61.107	56.216	2	7.7124E-34	51183	160511_QHF_FH_JSI12i_1	203.35	154.84			0.96373	0.9817	90.401	34	15	Median	1.0973	0.90346	52.933	6	2	Median	0.90986	0.99958	60.353	9	3	Median	0.94926	0.93231	144.91	9	5	Median	1.0968	1.1711	74.412	10	5	Median	96495000000	38802000000	57693000000	14985000000	5603800000	9380800000	22257000000	10976000000	11281000000	32315000000	11445000000	20870000000	26937000000	10777000000	16160000000	35090	2249	33212	216152;216153;216154;216155;216156;216157;216158;216159;216160;216161;216162;216163;216164;216165;216166;216167;216168;216169;216170;216171;216172;216173;216174;216175;216176;216177;216178;216179;216180;216181;216182;216183;216184;216185;216186;216187	291611;291612;291613;291614;291615;291616;291617;291618;291619;291620;291621;291622;291623;291624;291625;291626;291627;291628;291629;291630;291631;291632;291633;291634;291635;291636;291637;291638;291639;291640;291641;291642;291643;291644;291645;291646;291647;291648;291649;291650;291651;291652;291653;291654;291655;291656;291657;291658;291659;291660;291661;291662;291663;291664;291665;291666;291667;291668;291669;291670;291671;291672;291673;291674;291675;291676;291677;291678;291679;291680;291681;291682	291627			72	
LVQAFQFTDKHGEVCPAGWK	2	Acetyl (K)	2359.1419	0.14193657	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.576	69.262	3	3.074E-11	37936	160513_QHF_FH_JSI11Kac_6	165.3	143.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17760000	17760000	0	0	0	0	0	0	0	17760000	17760000	0	0	0	0	35091	2249	33213	216188	291683	291683	2349		1	
LVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQK	4	Acetyl (K)	3624.8035	0.80350239	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	0	0	3		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	76.686	68.306	5	1.4536E-67	36969	160513_QHF_FH_JSI11Kac_6	186.23	175.96			1.0602	1.1111	92.412	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1424	1.3146	NaN	1	0	Median	0.25551	0.24548	NaN	1	0	Median	1.0602	1.1111	NaN	1	0	Median	577290000	311250000	266040000	0	0	0	184190000	53892000	130300000	284530000	217910000	66615000	108570000	39443000	69130000	35092	2249	33214	216189;216190;216191	291684;291685;291686;291687;291688	291684	2349		5	
LVQAFQYTDEHGEVCPAGWK	1	Unmodified	2334.0739	0.073916585	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	65.074	64.295	3	1.5407E-10	56185	160511_QHF_FH_JSI11i_2	122.94	108.92			0.77165	0.76507	61.221	5	1	Median	0.33212	0.28106	NaN	1	1	Median	0.5194	0.64344	NaN	1	0	Median	0.77165	0.76507	NaN	1	0	Median	1.1853	1.233	14.367	2	0	Median	444160000	261180000	182980000	67103000	50860000	16243000	99414000	63659000	35756000	101850000	65187000	36660000	175790000	81474000	94317000	35093	1390	33215	216192;216193;216194;216195;216196	291689;291690;291691;291692;291693;291694	291692			6	
LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK	3	Unmodified	3787.7788	0.77880378	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			6						3	1	4	3	1	69.191	65.601	4;5	3.3238E-26	58524	160511_QHF_FH_JSI11i_3	100.36	96.046			0.92837	0.96608	31.911	9	3	Median	1.6396	1.371	NaN	1	0	Median	0.84124	0.98013	23.549	4	1	Median	0.90567	0.86887	16.759	3	1	Median	1.7835	1.8338	NaN	1	1	Median	795730000	354610000	441120000	34930000	11666000	23264000	336460000	188470000	147990000	404210000	149740000	254470000	20128000	4739200	15389000	35094	1390	33216	216197;216198;216199;216200;216201;216202;216203;216204;216205	291695;291696;291697;291698;291699;291700;291701;291702;291703;291704;291705;291706;291707;291708;291709;291710;291711	291696			17	
LVQAFQYTDK	1	Unmodified	1211.6186	0.61863837	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.34	6	8	7			2	3	4	5	9	10	7	9	46.482	41.85	2	8.0538E-11	38246	160511_QHF_FH_JSI12i_1	142.92	126.72			1.1583	1.1992	75.155	34	25	Median	1.4944	1.2593	97.461	9	9	Median	0.9279	1.1069	72.194	10	8	Median	1.1401	1.1199	82.538	6	2	Median	1.1335	1.2258	59.459	9	6	Median	20942000000	10015000000	10927000000	3766300000	1808600000	1957700000	6373200000	3255300000	3117900000	5390700000	2436800000	2953900000	5412200000	2514300000	2897900000	35095	2364	33217	216206;216207;216208;216209;216210;216211;216212;216213;216214;216215;216216;216217;216218;216219;216220;216221;216222;216223;216224;216225;216226;216227;216228;216229;216230;216231;216232;216233;216234;216235;216236;216237;216238;216239;216240	291712;291713;291714;291715;291716;291717;291718;291719;291720;291721;291722;291723;291724;291725;291726;291727;291728;291729;291730;291731;291732;291733;291734;291735;291736;291737;291738;291739;291740;291741;291742;291743;291744;291745;291746;291747;291748;291749;291750;291751;291752;291753;291754;291755;291756;291757;291758;291759;291760;291761;291762;291763	291722			52	
LVQAIFPTPDPAALK	1	Unmodified	1579.8974	0.89737941	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	85.63	85.137	2	0.0021359	77348	160511_QHF_FH_JSI11i_1	58.676	33.46			0.93924	0.99213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93924	0.99213	NaN	1	1	Median	6210000	3681500	2528500	0	0	0	0	0	0	0	0	0	6210000	3681500	2528500	35096	2285;3886	33218	216241;216242	291764;291765	291764			2	
LVQASEELLR	0	Unmodified	1156.6452	0.64518747	2375	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	45.601	44.621	2	0.0017007	38287	160511_QHF_FH_JSI11i_2	76.17	54.642			2.8148	2.3681	48.723	3	2	Median	2.8148	2.3681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8935	2.8606	NaN	1	1	Median	0.99093	1.1373	NaN	1	0	Median	125460000	46486000	78969000	23162000	8764000	14398000	0	0	0	54569000	15218000	39351000	47724000	22504000	25220000	35097	2375	33219	216243;216244;216245	291766;291767;291768	291768			3	
LVQDTPFLTGHGR	0	Unmodified	1439.7521	0.75211216	4170	Q96LW7	C9orf89	Bcl10-interacting CARD protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	41.896	41.407	3	1.1298E-05	36315	160511_QHF_FH_JSI11i_3	66.285	58.741			0.8442	0.80784	83.022	4	4	Median	NaN	NaN	NaN	0	0	Median	1.8494	2.0449	NaN	1	1	Median	0.50589	0.45569	NaN	1	1	Median	0.73734	0.74041	93.299	2	2	Median	141050000	79102000	61946000	0	0	0	30317000	8263700	22054000	33711000	20346000	13365000	77019000	50492000	26527000	35098	4170	33220	216246;216247;216248;216249;216250	291769;291770;291771;291772;291773	291770			5	
LVQDVANNTNEEAGDGTTTATVLAR	0	Unmodified	2559.2413	0.2412525	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.63	3.28	19	5	8			3				7	9	11	8	53.835	52.256	2;3;4	6.6048E-302	47408	160511_QHF_FH_JSI12i_1	467.01	439.87			1.0126	1.0467	25.103	31	5	Median	1.1381	0.96991	23.801	7	1	Median	0.8757	1.0387	28.678	8	2	Median	1.0872	1.0652	32.1	9	1	Median	1.015	1.0847	10.011	7	1	Median	37490000000	16652000000	20838000000	8530800000	3291400000	5239400000	10233000000	5455000000	4777500000	8767800000	3927800000	4840000000	9958300000	3977600000	5980700000	35099	980	33221	216251;216252;216253;216254;216255;216256;216257;216258;216259;216260;216261;216262;216263;216264;216265;216266;216267;216268;216269;216270;216271;216272;216273;216274;216275;216276;216277;216278;216279;216280;216281;216282;216283;216284;216285	291774;291775;291776;291777;291778;291779;291780;291781;291782;291783;291784;291785;291786;291787;291788;291789;291790;291791;291792;291793;291794;291795;291796;291797;291798;291799;291800;291801;291802;291803;291804;291805;291806;291807;291808;291809;291810;291811;291812;291813;291814;291815;291816;291817;291818;291819;291820;291821;291822;291823;291824;291825;291826;291827;291828;291829;291830;291831;291832;291833;291834;291835;291836;291837	291798			63	
LVQDVANNTNEEAGDGTTTATVLARSIAK	1	Unmodified	2958.4894	0.4894217	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		68.501	68.501	3	2.4748E-08	61034	160511_QHF_FH_JSI11i_3	61.37	50.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35100	980	33222	216286	291838	291838			1	
LVQDYGLESEVAQHLAATYGDK	1	Unmodified	2406.1703	0.17031939	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	85.925	85.212	3	1.3168E-18	73541	160511_QHF_FH_JSI12i_2	142.41	133.59			0.7739	0.74391	14.569	3	1	Plateau	0.98147	0.83286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65009	0.66446	NaN	1	0	Median	0.7739	0.87246	NaN	1	1	Median	680660000	358750000	321910000	200490000	93662000	106820000	0	0	0	221670000	125510000	96166000	258510000	139580000	118920000	35101	1558	33223	216287;216288;216289	291839;291840;291841;291842;291843;291844	291839			6	
LVQENQWLREELAGTQQK	1	Unmodified	2169.1178	0.11783031	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		62.588	62.588	3	0.0012584	55634	160511_QHF_FH_JSI11i_3	57.52	41.577			1.116	1.064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.116	1.064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29628000	7991300	21637000	0	0	0	0	0	0	29628000	7991300	21637000	0	0	0	35102	4625	33224	216290;216291	291845;291846	291845			2	
LVQEQKPK	2	Acetyl (K)	1010.576	0.57604528	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	1	0	0	1	By MS/MS				13	0						1				1				17.556	-0.25536	2	0.02558	5379	160513_QHF_FH_JSI9Kac_3	59.245	36.505			1.1509	0.94425	NaN	1	0	Median	1.1509	0.94425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47802000	21967000	25835000	47802000	21967000	25835000	0	0	0	0	0	0	0	0	0	35103	4988	33225	216292	291847	291847	3287		1	
LVQEQKPK	2	Unmodified	968.56548	0.56548059	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	5.8998	5.9635	2;3	0.010872	3533	160511_QHF_FH_JSI12i_3	49.418	35.648			1.931	1.9619	50.929	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89999	0.80903	NaN	1	0	Median	1.5369	1.5329	49.645	2	1	Median	253160000	112320000	140840000	0	0	0	0	0	0	34315000	18892000	15422000	218850000	93428000	125420000	35104	4988	33225	216293;216294;216295	291848;291849	291849			2	
LVQFHFTK	1	Unmodified	1018.56	0.56000128	3385	Q86YD1	PTOV1	Prostate tumor-overexpressed gene 1 protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		41.991	41.991	3	0.023358	36964	160511_QHF_FH_JSI11i_3	28.013	6.7248			1.0634	1.012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36281000	17689000	18592000	0	0	0	0	0	0	36281000	17689000	18592000	0	0	0	35105	3385	33226	216296	291850	291850			1	
LVQGGVFQEEAVTEALRAPGK	1	Unmodified	2198.1695	0.16953153	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	74.602	74.602	3	1.087E-09	66435	160511_QHF_FH_JSI11i_3	109.66	95.351			1.058	0.97023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.058	0.97023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51533000	24599000	26934000	0	0	0	0	0	0	51533000	24599000	26934000	0	0	0	35106	211	33227	216297;216298	291851;291852;291853	291851			3	
LVQGSILK	1	Unmodified	856.5382	0.53820321	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.56	2	7	2				2	4	3	6	5	6	3	36.584	31.709	2	0.00013937	18149	160513_QHF_FH_JSI11Kac_5	122.13	35.262			1.0536	1.0783	79.659	20	9	Median	1.3666	1.113	67.695	6	3	Median	1.0368	1.2143	109.4	5	1	Median	1.0493	1.0304	91.653	6	4	Median	1.1444	1.2621	41.866	3	1	Plateau	11309000000	5012200000	6297000000	2764300000	1099600000	1664700000	2561500000	1214000000	1347500000	4397100000	1885700000	2511400000	1586300000	812860000	773430000	35107	1010	33228	216299;216300;216301;216302;216303;216304;216305;216306;216307;216308;216309;216310;216311;216312;216313;216314;216315;216316;216317;216318	291854;291855;291856;291857;291858;291859;291860;291861;291862;291863;291864;291865;291866;291867;291868;291869;291870;291871;291872;291873;291874;291875	291870			22	
LVQGSILKK	2	Unmodified	984.63317	0.63316622	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	23.474	22.804	2	0.018034	18774	160511_QHF_FH_JSI12i_3	50.703	13.145			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35108	1010	33229	216319;216320	291876;291877	291877			2	
LVQHDLQVAK	1	Unmodified	1149.6506	0.6506072	3408	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	22.409	21.234	2	0.00028577	17441	160511_QHF_FH_JSI11i_2	88.819	38.116			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4455900	0	4455900	0	0	0	0	0	0	0	0	0	4455900	0	4455900	35109	3408	33230	216321;216322;216323;216324;216325	291878;291879;291880;291881;291882	291880			5	
LVQIASR	0	Unmodified	785.47594	0.4759373	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.86	6.2		2	2					3			2	2	3	21.484	17.256	2	0.01116	14650	160511_QHF_FH_JSI12i_3	71.715	21.176			0.91144	0.98607	11.07	7	0	Median	NaN	NaN	NaN	0	0	Median	0.87574	1.0456	11.023	2	0	Median	1.0882	1.061	10.357	2	0	Median	0.94578	1.0076	10.741	3	0	Plateau	728960000	366900000	362070000	0	0	0	105270000	52745000	52524000	243750000	117590000	126150000	379950000	196560000	183390000	35110	2785	33231	216326;216327;216328;216329;216330;216331;216332	291883;291884;291885;291886	291885			4	
LVQIEYALAAVAGGAPSVGIK	1	Unmodified	2026.1463	0.14627689	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.87	1	4	1						4	2	3	3	2	98.621	95.205	3	1.1588E-15	87334	160511_QHF_FH_JSI12i_2	136.14	126.48			0.98936	1.0361	14.49	10	0	Median	1.2412	1.0598	11.437	2	0	Median	0.82298	1.0023	3.4082	3	0	Plateau	1.1125	1.1307	24.43	3	0	Plateau	1.0191	1.1088	17.563	2	0	Median	5064400000	2579900000	2484400000	831570000	423970000	407600000	1133700000	662480000	471220000	1822600000	940510000	882110000	1276500000	552990000	723520000	35111	1265	33232	216333;216334;216335;216336;216337;216338;216339;216340;216341;216342	291887;291888;291889;291890;291891;291892;291893;291894;291895;291896;291897;291898;291899;291900;291901;291902;291903;291904;291905;291906	291888			19	
LVQIPHFK	1	Unmodified	980.58074	0.58073672	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	48.766	47.669	3	0.0013143	39041	160511_QHF_FH_JSI9i_3	72.485	48.33			1.212	1.4285	41.414	6	4	Median	2.3814	1.9409	14.209	2	2	Median	1.212	1.4285	11.14	2	2	Median	0.7449	0.70691	NaN	1	0	Median	0.92087	0.92607	NaN	1	0	Median	601290000	249470000	351820000	199400000	54580000	144820000	132240000	55996000	76249000	107180000	55257000	51924000	162470000	83638000	78831000	35112	498	33233	216343;216344;216345;216346;216347;216348	291907;291908;291909;291910;291911;291912	291911			6	
LVQLDSAISMELWQEAFK	1	Unmodified	2107.066	0.06597766	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.15	102.04	3	1.3924E-11	89837	160511_QHF_FH_JSI11i_2	147.92	138.39			0.76807	0.77585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76807	0.77585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	168670000	97469000	71198000	0	0	0	0	0	0	168670000	97469000	71198000	0	0	0	35113	2502	33234	216349	291913	291913			1	
LVQLGQAEK	1	Unmodified	984.5604	0.56039521	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.02	2	2					1				1	2	2	26.586	24.249	2	0.0079098	21627	160511_QHF_FH_JSI12i_1	52.867	14.061			1.0062	1.0831	28.999	5	3	Median	NaN	NaN	NaN	0	0	Median	0.826	0.96299	NaN	1	0	Median	1.4523	1.4613	26.064	2	2	Median	0.88633	0.93801	20.344	2	1	Median	314720000	165720000	149010000	0	0	0	105900000	62355000	43548000	75225000	34787000	40438000	133600000	68576000	65020000	35114	493	33235	216350;216351;216352;216353;216354	291914;291915;291916;291917;291918;291919	291915			5	
LVQLILHEYK	1	Unmodified	1254.7336	0.73360855	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.5		3	5						13	4	6	6	5	61.173	55.167	2;3	1.5752E-10	30163	160513_QHF_FH_JSI11Kac_6	138.66	106.72			0.89388	0.90746	186.55	15	15	Median	0.090845	0.078666	202.37	3	3	Plateau	0.1067	0.12654	192.15	4	4	Linear	1.3646	1.2656	180.78	5	5	Median	0.034929	0.035384	173.56	3	3	Plateau	1053200000	765760000	287440000	137980000	88724000	49257000	378360000	296590000	81763000	430620000	293190000	137430000	106240000	87255000	18986000	35115	1843	33236	216355;216356;216357;216358;216359;216360;216361;216362;216363;216364;216365;216366;216367;216368;216369;216370;216371;216372;216373;216374;216375	291920;291921;291922;291923;291924;291925;291926;291927;291928;291929;291930;291931;291932;291933;291934;291935;291936;291937;291938;291939;291940	291927			21	
LVQLLVK	1	Unmodified	811.55312	0.55312499	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1	1	1	2	2	52.363	50.42	2	0.025486	44340	160511_QHF_FH_JSI9i_2	57.335	27.997			0.73448	0.74021	142.51	6	6	Median	0.59102	0.50169	NaN	1	1	Median	0.91275	1.0921	NaN	1	1	Median	1.3076	1.2475	235.6	2	2	Median	1.5103	1.6135	191.6	2	2	Median	336980000	176200000	160780000	54928000	33083000	21845000	19752000	6923500	12829000	112130000	60830000	51303000	150160000	75359000	74805000	35116	1065	33237	216376;216377;216378;216379;216380;216381	291941;291942;291943;291944;291945;291946	291943			6	
LVQLVYFLPSLPADLLSR	0	Unmodified	2043.1768	0.17684874	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		99.356	90.994	2;3	8.7071E-24	54828	160513_QHF_FH_JSI10Kac_6	155.28	123.22			0.69072	0.63009	35.811	4	2	Median	0.58734	0.50542	38.548	2	2	Median	0.76245	0.91571	NaN	1	0	Median	0.62573	0.5981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	590280000	348080000	242190000	199490000	133990000	65505000	263770000	142130000	121640000	127010000	71961000	55049000	0	0	0	35117	5106	33238	216382;216383;216384;216385	291947;291948;291949;291950;291951	291950			5	
LVQMEVLMN	0	Oxidation (M)	1091.5355	0.53550237	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	1	0		By MS/MS			12	0					1						1			69.44	60.171	2	0.012812	25500	160513_QHF_FH_JSI10Kac_2	50.607	46.012			1.0734	1.2569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0734	1.2569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2562700	1310800	1251900	0	0	0	2562700	1310800	1251900	0	0	0	0	0	0	35118	3503	33239	216386	291952	291952		2263	1	
LVQMEVLMN	0	2 Oxidation (M)	1107.5304	0.53041699	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	2	0				By MS/MS	11.5	0.5				1	1								2	44.069	35.159	2	0.027771	16264	160513_QHF_FH_JSI12Kac_2	31.934	27.797			1.0128	1.076	2.872	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0128	1.076	2.872	2	0	Median	5276900	3048500	2228400	0	0	0	0	0	0	0	0	0	5276900	3048500	2228400	35119	3503	33239	216387;216388	291953	291953		2263	1	
LVQNGPEVHPGANFIQQR	0	Unmodified	2003.0337	0.03370675	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			47.531	45.943	3	3.6526E-12	38410	160511_QHF_FH_JSI10i_3	122.14	106			1.12	1.0716	7.9245	2	0	Median	1.4264	1.1334	NaN	1	0	Median	0.87943	1.0132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109410000	50991000	58419000	50478000	20146000	30332000	58932000	30845000	28087000	0	0	0	0	0	0	35120	207	33240	216389;216390	291954;291955;291956;291957	291955			4	
LVQNGTEPSSLPFLDPNARPLVPEVSIK	1	Unmodified	3016.6233	0.6233364	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	100.81	100.79	3	1.736E-42	87418	160511_QHF_FH_JSI12i_3	175.48	151.57			0.756	0.71166	26.351	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.99896	1.1859	NaN	1	1	Median	0.756	0.71166	NaN	1	0	Median	0.81195	0.82064	NaN	1	1	Median	332340000	186320000	146020000	0	0	0	50378000	15965000	34413000	161880000	89349000	72529000	120090000	81007000	39081000	35121	1296	33241	216391;216392;216393	291958;291959;291960	291960			3	
LVQQAGR	0	Unmodified	770.43989	0.43988615	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	5.7184	5.4824	2	0.031719	3309	160511_QHF_FH_JSI9i_2	53.185	3.0657			1.2518	1.1683	40.568	4	1	Median	1.4633	1.2413	NaN	1	1	Median	0.71519	0.89655	NaN	1	0	Median	1.0708	1.0996	NaN	1	0	Median	2.2089	2.3	NaN	1	0	Median	538200000	255140000	283050000	164260000	74737000	89519000	106900000	58402000	48494000	226700000	107570000	119130000	40340000	14431000	25909000	35122	4361	33242	216394;216395;216396;216397	291961;291962	291961			2	
LVQQGLLTPDMLK	1	Unmodified	1454.8167	0.81668625	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	75.052	74.387	2	1.1027E-10	67379	160511_QHF_FH_JSI10i_1	152.07	104.47			1.069	1.0995	27.309	11	6	Median	1.5549	1.3323	4.7445	2	0	Median	0.88508	1.0995	24.657	3	2	Median	1.069	1.0544	23.164	3	2	Median	0.86122	0.86389	45.761	3	2	Median	432760000	211320000	221440000	75998000	28760000	47238000	106140000	55521000	50623000	154710000	80724000	73983000	95916000	46317000	49599000	35123	3466	33243	216398;216399;216400;216401;216402;216403;216404;216405;216406;216407;216408	291963;291964;291965;291966;291967;291968;291969;291970;291971;291972;291973;291974;291975;291976;291977	291970			15	
LVQSPNSYFMDVK	1	Unmodified	1526.7439	0.74391524	1541;3208	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5	4	4				1	4		5	5	5	3	67.181	63.583	2	2.4832E-15	56601	160511_QHF_FH_JSI10i_2	173.71	141.39			0.91057	0.98204	35.231	18	10	Median	1.5944	1.3647	35.38	5	4	Median	0.67967	0.83553	21.461	5	2	Median	1.0046	1.0294	44.311	5	2	Median	0.85515	0.91134	18.935	3	2	Median	6173000000	3199700000	2973300000	1679700000	729800000	949860000	1114500000	650420000	464110000	2037000000	1068000000	969020000	1341800000	751520000	590320000	35124	1541;3208	33244	216409;216410;216411;216412;216413;216414;216415;216416;216417;216418;216419;216420;216421;216422;216423;216424;216425;216426	291978;291979;291980;291981;291982;291983;291984;291985;291986;291987;291988;291989;291990;291991;291992;291993;291994;291995;291996;291997;291998;291999;292000;292001;292002;292003;292004;292005;292006;292007;292008	292007			31	
LVQSPNSYFMDVK	1	Oxidation (M)	1542.7388	0.73882986	1541;3208	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	6.26	4	4					1	3		3	2	3	4	60.203	56.087	2	0.00019377	50788	160511_QHF_FH_JSI11i_1	85.924	46.619			0.85623	0.89916	16.795	12	1	Median	1.1115	0.94925	14.765	3	0	Median	0.64398	0.77858	20.587	2	1	Median	0.75326	0.80491	7.7322	3	0	Plateau	0.89167	0.95844	16.334	4	0	Median	626930000	341600000	285330000	122690000	53523000	69168000	170540000	107460000	63080000	203150000	106780000	96372000	130550000	73837000	56709000	35125	1541;3208	33244	216427;216428;216429;216430;216431;216432;216433;216434;216435;216436;216437;216438	292009;292010;292011;292012;292013;292014;292015;292016;292017;292018;292019;292020;292021;292022;292023;292024;292025	292009		1209	17	
LVQSQVAR	0	Unmodified	899.51886	0.51886475	4432	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	11.118	10.428	2	0.016537	7992	160511_QHF_FH_JSI12i_2	49.442	2.6751			0.88346	0.99234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88346	0.99234	NaN	1	0	Median	95069000	44372000	50698000	0	0	0	0	0	0	0	0	0	95069000	44372000	50698000	35126	4432	33245	216439	292026	292026			1	
LVQTAAQQVAEDK	1	Unmodified	1399.7307	0.73070802	2851	Q53FT3	C11orf73	Protein Hikeshi	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	29.338	27.423	2	3.1371E-05	24283	160511_QHF_FH_JSI11i_1	117.86	83.327			1.4985	1.4801	85.165	6	6	Median	3.0296	2.4876	NaN	1	1	Median	1.1513	1.3382	NaN	1	1	Median	0.57331	0.56177	111.01	3	3	Plateau	1.5144	1.5561	NaN	1	1	Median	763770000	387200000	376570000	122730000	42131000	80602000	154320000	90948000	63376000	313960000	186870000	127080000	172760000	67250000	105510000	35127	2851	33246	216440;216441;216442;216443;216444;216445	292027;292028;292029;292030;292031;292032	292028			6	
LVQTAELTK	1	Unmodified	1001.5757	0.57571092	1926	P60983;O60234	GMFB;GMFG	Glia maturation factor beta;Glia maturation factor gamma	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.8	5.63	1						3			1		2	1	33.646	26.32	2	0.0032743	16296	160513_QHF_FH_JSI11Kac_4	80.219	21.014			1.2208	1.1714	67.239	4	4	Median	2.249	1.8741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.0895	95.362	2	2	Median	0.6804	0.73218	NaN	1	1	Median	144930000	55475000	89455000	117710000	41637000	76071000	0	0	0	21413000	10567000	10846000	5808300	3270800	2537600	35128	1926	33247	216446;216447;216448;216449	292033;292034;292035;292036	292034			4	
LVRFPEDLENDIR	0	Unmodified	1614.8366	0.83657007	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		4	4							2	6			68.499	67.388	3	5.2945E-17	56508	160511_QHF_FH_JSI10i_3	123.02	97.841			1.2778	1.1219	30.726	5	1	Median	1.4624	1.2688	17.403	2	1	Median	1.188	1.4076	37.731	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299020000	148470000	150540000	107000000	39078000	67921000	192020000	109390000	82624000	0	0	0	0	0	0	35129	220	33248	216450;216451;216452;216453;216454;216455;216456;216457	292037;292038;292039;292040;292041;292042;292043;292044;292045	292041			9	
LVRPPVQVYGIEGR	0	Unmodified	1581.8991	0.89911075	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			56.988	55.439	3	0.00045549	45373	160511_QHF_FH_JSI9i_3	61.732	40.892			1.0172	0.99129	8.2064	2	0	Median	1.3007	1.0505	NaN	1	0	Median	0.79549	0.93541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	181730000	99411000	82315000	85258000	44331000	40927000	96468000	55080000	41388000	0	0	0	0	0	0	35130	1612	33249	216458;216459;216460	292046;292047;292048;292049	292049			4	
LVSDANEQYK	1	Unmodified	1165.5615	0.56151742	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		15.949	15.764	2	0.013734	13220	160511_QHF_FH_JSI11i_1	53.493	38.82			1.2853	1.3752	7.1607	2	2	Median	NaN	NaN	NaN	0	0	Median	1.215	1.4466	NaN	1	1	Median	1.3597	1.3073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79978000	32544000	47433000	0	0	0	43698000	18708000	24990000	36280000	13836000	22444000	0	0	0	35131	5458	33250	216461;216462	292050;292051	292050			2	
LVSDEMVVELIEK	1	Unmodified	1502.7902	0.79019673	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	96.417	96.15	2;3	8.4245E-11	84339	160511_QHF_FH_JSI11i_2	151.1	151.1			0.78338	0.84337	13.345	8	0	Median	1.1166	0.95664	17.41	2	0	Median	0.61521	0.75807	14.667	2	0	Median	0.85009	0.86592	12.399	2	0	Median	0.75511	0.8342	4.3914	2	0	Median	898340000	486970000	411360000	228810000	114080000	114730000	165850000	104450000	61399000	315700000	169560000	146130000	187980000	98878000	89100000	35132	1835	33251	216463;216464;216465;216466;216467;216468;216469;216470	292052;292053;292054;292055;292056;292057;292058;292059;292060;292061;292062;292063;292064;292065;292066;292067;292068	292062			17	
LVSDGNINSDR	0	Unmodified	1188.5735	0.57347909	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		16.685	16.564	2	0.040954	13953	160511_QHF_FH_JSI11i_1	37.591	23.595			0.96475	0.93829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96475	0.93829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74722000	30752000	43969000	0	0	0	0	0	0	74722000	30752000	43969000	0	0	0	35133	2162	33252	216471	292069	292069			1	
LVSDGNINSDRIQEK	1	Unmodified	1686.8537	0.8536767	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	27.428	27.406	3	0.00058235	22919	160511_QHF_FH_JSI12i_3	61.409	37.567			0.8793	0.8567	22.719	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0655	1.006	NaN	1	0	Median	0.72564	0.72956	NaN	1	0	Median	147040000	74257000	72782000	0	0	0	0	0	0	60161000	28717000	31444000	86878000	45540000	41338000	35134	2162	33253	216472;216473	292070;292071;292072	292072			3	
LVSDGQALPEMEIHLQTNAEK	1	Unmodified	2322.1526	0.15256084	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							2	1	1	3	69.711	68.938	3	1.9919E-22	60742	160511_QHF_FH_JSI9i_2	141.1	126.49			1.1868	1.0131	15.245	7	2	Linear	1.4657	1.2397	19.402	2	1	Median	1.2091	1.4094	NaN	1	0	Median	0.97815	1.0003	NaN	1	0	Median	0.99929	1.0159	12.354	3	1	Plateau	1191000000	553720000	637310000	208340000	88992000	119350000	97576000	48882000	48694000	285560000	140960000	144600000	599550000	274880000	324660000	35135	2328	33254	216474;216475;216476;216477;216478;216479;216480	292073;292074;292075;292076;292077;292078;292079;292080;292081	292080			9	
LVSDGQALPEMEIHLQTNAEK	1	Oxidation (M)	2338.1475	0.14747546	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	1	0	By MS/MS				2	0		1								1				57.177	56.168	3	0.023065	49282	160511_QHF_FH_JSI9i_2	32.227	24.235			0.41677	0.36853	NaN	1	1	Median	0.41677	0.36853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30577000	23328000	7248400	30577000	23328000	7248400	0	0	0	0	0	0	0	0	0	35136	2328	33254	216481	292082	292082			1	
LVSDSLSEHEK	1	Unmodified	1242.6092	0.6091959	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	17.575	17.048	2	0.0054139	13732	160511_QHF_FH_JSI11i_2	63.216	56.903			0.86805	0.96163	43.695	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80469	0.79048	59.686	2	2	Median	0.86805	0.96163	NaN	1	1	Median	49900000	26016000	23885000	0	0	0	0	0	0	34914000	18226000	16688000	14986000	7789800	7196500	35137	4161	33255	216482;216483;216484	292083;292084;292085	292084			3	
LVSEFPYIEAEVK	1	Unmodified	1522.7919	0.79191129	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	2	3	80.114	79.449	2	6.1575E-05	68638	160511_QHF_FH_JSI12i_2	115.29	84			1.1132	1.1759	36.396	7	4	Median	0.7198	0.61162	NaN	1	0	Median	0.7264	0.85437	NaN	1	1	Median	1.5302	1.5095	11.974	2	1	Median	1.1132	1.1759	27.342	3	2	Median	457590000	229930000	227660000	51799000	26130000	25669000	96533000	52004000	44529000	128430000	53011000	75420000	180830000	98785000	82043000	35138	1558	33256	216485;216486;216487;216488;216489;216490;216491	292086;292087;292088;292089;292090;292091;292092;292093;292094	292089			9	
LVSEKLASYQAAR	1	Acetyl (K)	1476.7936	0.79364262	784	P01106	MYC	Myc proto-oncogene protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	1.02						4	4	8	4	3	7	5	5	59.226	49.04	2;3	1.5862E-40	24750	160513_QHF_FH_JSI10Kac_5	199.7	177.7			0.9165	1.0021	27.052	19	1	Median	1.4353	1.2422	44.754	3	1	Median	0.87722	1.0459	25.823	6	0	Median	1.0194	1.0021	19.775	5	0	Median	0.86719	0.9359	5.2194	5	0	Median	1107000000	569610000	537420000	204240000	85000000	119240000	358590000	187940000	170650000	245990000	121170000	124820000	298200000	175500000	122710000	35139	784	33257	216492;216493;216494;216495;216496;216497;216498;216499;216500;216501;216502;216503;216504;216505;216506;216507;216508;216509;216510;216511	292095;292096;292097;292098;292099;292100;292101;292102;292103;292104;292105;292106;292107;292108;292109;292110;292111;292112;292113;292114;292115;292116;292117;292118;292119;292120;292121;292122;292123	292116	410		29	
LVSEKLASYQAARK	2	Acetyl (K)	1604.8886	0.88860564	784	P01106	MYC	Myc proto-oncogene protein	yes	yes	1	0	0	2		By MS/MS		By MS/MS	16	0									2		1		1	50.598	41.415	3	0.0013376	22807	160513_QHF_FH_JSI10Kac_6	75.911	70.007			1.092	1.2347	25.293	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2505	1.4766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95359	1.0325	NaN	1	0	Median	32022000	13212000	18810000	0	0	0	23387000	8357700	15029000	0	0	0	8635000	4853900	3781100	35140	784	33258	216512;216513	292124	292124	410		1	
LVSELWDAGIK	1	Unmodified	1229.6656	0.66558856	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.75	2	4	4					1		3	3	3	2	71.859	70.089	2	1.6476E-06	60905	160511_QHF_FH_JSI12i_2	112.75	64.465			1.002	0.97984	40.275	11	4	Median	1.3122	1.1159	27.083	3	2	Median	0.63052	0.77867	66.412	3	1	Plateau	1.002	0.94688	2.5201	3	0	Plateau	0.69149	0.73797	61.554	2	1	Median	1096800000	583320000	513490000	195670000	80713000	114960000	245630000	147340000	98291000	416230000	239710000	176520000	239270000	115550000	123720000	35141	1012	33259	216514;216515;216516;216517;216518;216519;216520;216521;216522;216523;216524	292125;292126;292127;292128;292129;292130;292131;292132;292133;292134;292135;292136;292137;292138;292139;292140;292141	292128			17	
LVSESSDVLPK	1	Unmodified	1172.6289	0.62886871	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.73	9	4	3		2	6	2	1		6	5	9	7	41.89	36.917	2;3	1.8366E-13	34862	160511_QHF_FH_JSI12i_1	152.28	127.35		+	0.85579	0.86784	46.476	25	8	Median	0.82332	0.71085	33.704	6	2	Median	0.49618	0.81107	30.437	4	1	Linear	0.93261	0.89148	64.693	8	2	Median	0.90807	0.94918	41.572	7	3	Median	19200000000	10139000000	9061100000	4503800000	2228900000	2274900000	4427600000	2497200000	1930400000	5280400000	2617400000	2663000000	4987800000	2795000000	2192800000	35142	51	33260	216525;216526;216527;216528;216529;216530;216531;216532;216533;216534;216535;216536;216537;216538;216539;216540;216541;216542;216543;216544;216545;216546;216547;216548;216549;216550;216551	292142;292143;292144;292145;292146;292147;292148;292149;292150;292151;292152;292153;292154;292155;292156;292157;292158;292159;292160;292161;292162;292163;292164;292165;292166;292167;292168;292169;292170;292171;292172;292173;292174;292175;292176;292177;292178;292179;292180;292181;292182;292183;292184;292185;292186;292187	292155			46	
LVSEYMSK	1	Unmodified	955.46847	0.46846866	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.1	4.97	3	5					2			1	4	5		29.574	26.497	2	0.0037119	23003	160511_QHF_FH_JSI9i_2	70.919	33.898			0.7647	0.7734	57.167	7	6	Median	1.0105	0.87992	NaN	1	0	Median	0.82633	0.99485	35.608	2	2	Median	0.68228	0.66956	77.557	4	4	Median	NaN	NaN	NaN	0	0	Median	1724500000	942190000	782310000	278350000	108330000	170020000	680980000	400470000	280510000	765160000	433380000	331780000	0	0	0	35143	1006	33261	216552;216553;216554;216555;216556;216557;216558;216559;216560;216561	292188;292189;292190;292191;292192;292193;292194;292195;292196;292197;292198	292194			11	
LVSGMQHPGSAGGVYETTQHFIDIK	1	Oxidation (M)	2687.3014	0.30135034	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									2	3	62.071	61.903	3;4	5.947E-12	54994	160511_QHF_FH_JSI11i_3	98.019	90.573			0.91331	0.93212	16.917	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94833	0.89598	13.29	2	0	Median	0.8494	0.86831	20.019	3	2	Plateau	878670000	516910000	361760000	0	0	0	0	0	0	468640000	283750000	184890000	410020000	233160000	176860000	35144	1648	33262	216562;216563;216564;216565;216566	292199;292200;292201;292202;292203;292204;292205;292206	292203		1309	8	
LVSGMQHPGSAGGVYETTQHFIDIK	1	Unmodified	2671.3064	0.30643572	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7	6.38		2	2						2	2	2		2	71.284	67.283	3;4	3.7529E-14	34323	160513_QHF_FH_JSI12Kac_6	103.29	95.84			0.95662	1.0288	15.479	5	3	Median	1.0861	0.92097	18.372	2	2	Median	0.89892	1.1184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86834	0.91032	17.299	2	0	Median	2667500000	1245800000	1421700000	268510000	116040000	152470000	213930000	102620000	111320000	0	0	0	2185100000	1027100000	1158000000	35145	1648	33262	216567;216568;216569;216570;216571;216572	292207;292208;292209;292210;292211;292212;292213;292214	292214			8	
LVSGWVK	1	Unmodified	787.45922	0.4592246	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	2	2	2	36.286	34.426	2	0.018198	30135	160511_QHF_FH_JSI10i_2	60.294	43.367			0.66855	0.66407	51.24	8	2	Median	1.0169	0.85739	60.778	2	1	Median	0.82763	0.97287	29.358	2	0	Median	0.42845	0.41672	17.998	2	1	Median	0.59889	0.63467	70.516	2	0	Median	4069900000	2103100000	1966900000	400640000	143900000	256730000	1055300000	569780000	485530000	1254800000	658040000	596710000	1359300000	731360000	627900000	35146	576	33263	216573;216574;216575;216576;216577;216578;216579;216580	292215;292216;292217;292218;292219;292220	292219			6	
LVSGWVKPIIIGR	1	Acetyl (K)	1478.8973	0.89731984	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	87.006	77.623	2	4.5352E-16	43129	160513_QHF_FH_JSI11Kac_6	133.81	106.69			0.25924	0.26611	31.58	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34197	0.33269	NaN	1	0	Median	0.19652	0.21285	NaN	1	0	Median	107020000	81680000	25335000	0	0	0	0	0	0	98196000	74788000	23408000	8819400	6892400	1927000	35147	576	33264	216581;216582	292221;292222;292223	292221	298		3	
LVSHLTAQLNELK	1	Unmodified	1464.83	0.83002813	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	1	2	2	54.849	52.722	2;3	6.6255E-06	45143	160511_QHF_FH_JSI12i_3	128.1	74.709			1.3932	1.3506	129.77	6	6	Median	6.4316	5.5114	NaN	1	1	Median	0.32235	0.37469	NaN	1	1	Median	1.9887	1.8669	150.03	2	2	Median	0.97942	0.99835	146.99	2	2	Median	2245100000	1053100000	1191900000	20355000	6097800	14257000	335400000	209800000	125600000	949990000	345230000	604760000	939330000	492010000	447310000	35148	2547	33265	216583;216584;216585;216586;216587;216588	292224;292225;292226;292227;292228;292229	292229			6	
LVSIDSK	1	Unmodified	760.43307	0.43306943	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.22	6	5	1			1	1			5	3	4	2	20.579	18.133	2	0.0096908	17083	160511_QHF_FH_JSI12i_1	82.671	33.313			1.1328	1.1029	82.948	14	7	Median	1.4197	1.174	98.394	5	2	Median	1.1573	1.3701	104.25	3	2	Median	1.0727	1.0797	64.544	4	2	Median	0.49276	0.53833	42.057	2	1	Median	6804100000	3514800000	3289200000	1597600000	713460000	884130000	1462400000	769010000	693380000	2680800000	1415100000	1265700000	1063300000	617250000	446060000	35149	1192;512;2527	33266	216589;216590;216591;216592;216593;216594;216595;216596;216597;216598;216599;216600;216601;216602	292230;292231;292232;292233;292234;292235;292236;292237;292238;292239;292240;292241;292242;292243	292233			14	
LVSIGAEEIVDGNAK	1	Unmodified	1513.7988	0.79878758	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							3	2	1	3	62.34	61.263	2	9.8652E-07	53824	160511_QHF_FH_JSI9i_2	142.47	118.38			0.48425	0.45827	95.454	6	6	Median	0.27731	0.2345	51.751	2	2	Median	0.091415	0.11181	NaN	1	1	Median	0.60119	0.62112	NaN	1	1	Median	0.88649	0.97008	57.661	2	2	Median	321940000	209570000	112380000	76400000	57472000	18928000	38650000	32904000	5745700	91072000	54591000	36481000	115820000	64598000	51223000	35150	361	33267	216603;216604;216605;216606;216607;216608;216609;216610;216611	292244;292245;292246;292247;292248;292249;292250;292251;292252	292250			9	
LVSIGAEEIVDGNVK	1	Unmodified	1541.8301	0.83008771	1021	P12814;P35609	ACTN1;ACTN2	Alpha-actinin-1;Alpha-actinin-2	yes	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	68.199	67.1	2	0.00025435	59243	160511_QHF_FH_JSI9i_2	101.89	78.283			0.59188	0.58057	59.753	2	1	Median	0.4332	0.3805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8087	0.88584	NaN	1	0	Median	39481000	26319000	13162000	17099000	12776000	4322500	0	0	0	0	0	0	22382000	13543000	8839500	35151	1021	33268	216612;216613	292253;292254	292254			2	
LVSKDGK	2	Acetyl (K)	787.44397	0.44396847	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	15.108	7.769	2	0.036757	6089	160513_QHF_FH_JSI10Kac_3	66.073	25.805			0.83182	0.90558	26.57	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0016	1.194	NaN	1	0	Median	0.64053	0.63455	NaN	1	0	Median	0.83182	0.90558	10.204	2	0	Median	97695000	57646000	40049000	0	0	0	23957000	13305000	10652000	25368000	15303000	10065000	48370000	29039000	19331000	35152	1154	33269	216614;216615;216616;216617	292255;292256	292256			2	
LVSLASEVQDLHLAQR	0	Unmodified	1777.9686	0.96864688	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.443	75.835	3	4.5989E-16	67685	160511_QHF_FH_JSI11i_3	165.34	147.42			1.0019	1.0129	13.676	6	1	Median	1.1451	0.96521	NaN	1	0	Median	0.86917	1.0739	NaN	1	0	Median	1.0839	1.0614	0.46953	2	0	Median	0.81339	0.8522	18.283	2	1	Median	823840000	381180000	442660000	93541000	37587000	55954000	81487000	43446000	38042000	387800000	168760000	219040000	261010000	131390000	129620000	35153	4180	33270	216618;216619;216620;216621;216622;216623	292257;292258;292259;292260;292261;292262;292263;292264;292265;292266	292258			10	
LVSLGTCFGK	1	Unmodified	1080.5638	0.56376603	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.061	53.683	2	0.0073259	46017	160511_QHF_FH_JSI12i_2	53.089	31.129			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35154	5484	33271	216624	292267	292267			1	
LVSLIGSK	1	Unmodified	815.51165	0.5116541	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.7	3	4	2					3	3	3	3	5	4	45.085	40.743	2	0.002025	35784	160511_QHF_FH_JSI9i_2	83.206	16.174			0.8418	0.9956	54.801	15	6	Median	1.331	1.133	9.4674	3	0	Plateau	0.82729	0.9779	38.318	3	1	Median	0.81801	0.84435	71.97	5	3	Median	0.94248	1.0125	65.481	4	2	Median	7034500000	3633500000	3401000000	866230000	429970000	436260000	957650000	568050000	389600000	2637200000	1319100000	1318100000	2573400000	1316400000	1257000000	35155	1264	33272	216625;216626;216627;216628;216629;216630;216631;216632;216633;216634;216635;216636;216637;216638;216639	292268;292269;292270;292271;292272;292273;292274;292275;292276;292277;292278;292279;292280;292281;292282;292283;292284;292285;292286;292287;292288	292278			21	
LVSLIGSKTQIPTQR	1	Acetyl (K)	1681.9727	0.97266962	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		76.334	66.348	2	3.9304E-32	36209	160513_QHF_FH_JSI11Kac_6	212.59	172			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12952000	12952000	0	0	0	0	0	0	0	12952000	12952000	0	0	0	0	35156	1264	33273	216640;216641;216642	292289;292290;292291	292289	1160		3	
LVSLVHSGSVYLHR	0	Unmodified	1565.8678	0.86781062	3131	Q6PKC3	TXNDC11	Thioredoxin domain-containing protein 11	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			54.907	46.343	4	0.0014323	25592	160513_QHF_FH_JSI10Kac_6	50.843	43.119			0.75583	0.91484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75583	0.91484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21485000	11823000	9662700	0	0	0	21485000	11823000	9662700	0	0	0	0	0	0	35157	3131	33274	216643	292292	292292			1	
LVSLYFDTK	1	Unmodified	1084.5805	0.58046195	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	3	1	65.92	63.313	2	4.2131E-06	54467	160511_QHF_FH_JSI12i_2	120.12	102.73			1.0772	1.286	52.423	5	2	Median	1.5775	1.3767	NaN	1	1	Median	1.0772	1.2932	NaN	1	0	Median	0.73244	0.71587	82.848	2	1	Median	1.0306	1.159	NaN	1	0	Median	369820000	186150000	183680000	57757000	29440000	28317000	74855000	44097000	30758000	121700000	54098000	67603000	115510000	58512000	56999000	35158	109	33275	216644;216645;216646;216647;216648;216649	292293;292294;292295;292296;292297;292298	292294			5	
LVSNHSLHETSSVFVDSLTK	1	Unmodified	2199.1172	0.11716161	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.15		3	18						10	7	10	9	5	61.979	58.521	2;3;4	1.1219E-44	51811	160511_QHF_FH_JSI11i_3	211.17	197.75			0.89264	0.90252	45.245	30	11	Median	1.358	1.1015	20.619	7	2	Median	0.53868	0.62151	27.662	9	4	Median	1.0087	0.96241	66.704	9	4	Median	0.90005	0.9409	22.517	5	1	Median	14651000000	7100900000	7549700000	1486600000	673130000	813450000	2549900000	1295900000	1253900000	7043600000	3329600000	3714100000	3570500000	1802300000	1768200000	35159	1192	33276	216650;216651;216652;216653;216654;216655;216656;216657;216658;216659;216660;216661;216662;216663;216664;216665;216666;216667;216668;216669;216670;216671;216672;216673;216674;216675;216676;216677;216678;216679;216680	292299;292300;292301;292302;292303;292304;292305;292306;292307;292308;292309;292310;292311;292312;292313;292314;292315;292316;292317;292318;292319;292320;292321;292322;292323;292324;292325;292326;292327;292328;292329;292330;292331;292332;292333;292334;292335;292336;292337;292338;292339;292340;292341;292342;292343;292344;292345;292346;292347;292348;292349;292350;292351;292352;292353;292354;292355	292300			56	
LVSPEPPPK	1	Unmodified	962.54368	0.54368251	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	24.657	24.101	2	0.052099	21404	160511_QHF_FH_JSI12i_1	54.712	25.814			1.0382	1.0288	8.9787	4	0	Median	1.1208	0.90072	NaN	1	0	Median	0.86539	1.024	NaN	1	0	Median	1.1433	1.119	NaN	1	0	Median	0.96178	1.0336	NaN	1	0	Median	172420000	85258000	87164000	39407000	20648000	18758000	45757000	22636000	23121000	43868000	22427000	21441000	43390000	19546000	23844000	35160	4719	33277	216681;216682;216683;216684	292356	292356			0	
LVSPETEASEESLQFNLEK	1	Unmodified	2149.0427	0.042659261	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	74.645	74.276	3	2.7242E-06	67625	160511_QHF_FH_JSI12i_1	95.094	85.998			0.69508	0.77077	61.743	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4183	0.4981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.155	1.1927	NaN	1	1	Median	95735000	60444000	35291000	0	0	0	60718000	47546000	13172000	0	0	0	35018000	12899000	22119000	35161	2320	33278	216685;216686	292357;292358	292357			2	
LVSPGSANETSSILVESVTR	0	Unmodified	2045.0641	0.064063405	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.84	0.586	5	12	2							3	4	5	7	74.487	73.848	2;3	5.0747E-33	64789	160511_QHF_FH_JSI11i_2	191.78	168.07			0.94565	1.006	21.022	16	10	Median	1.2848	1.0999	20.6	3	2	Median	0.58438	0.71957	15.962	3	2	Plateau	0.98597	1.014	17.385	5	3	Median	1.0799	1.1349	21.314	5	3	Median	1488900000	734730000	754200000	350670000	134480000	216200000	277190000	169430000	107760000	587280000	302620000	284660000	273790000	128200000	145590000	35162	512	33279	216687;216688;216689;216690;216691;216692;216693;216694;216695;216696;216697;216698;216699;216700;216701;216702;216703;216704;216705	292359;292360;292361;292362;292363;292364;292365;292366;292367;292368;292369;292370;292371;292372;292373;292374;292375;292376;292377;292378;292379;292380;292381;292382	292375			24	
LVSQDNFGFDLPAVEAATK	1	Unmodified	2021.0106	0.010571271	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	93.37	93.118	2;3	1.8218E-10	84671	160511_QHF_FH_JSI12i_1	133.47	108.62			0.64086	0.79765	13.315	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74704	0.85005	NaN	1	0	Median	0.82254	0.79765	NaN	1	0	Median	0.64086	0.65822	NaN	1	0	Median	45777000	23801000	21975000	0	0	0	13728000	8040800	5687600	13099000	6959100	6140400	18949000	8801500	10147000	35163	2162	33280	216706;216707;216708;216709;216710	292383;292384;292385;292386;292387;292388;292389	292385			6	
LVSQEEMEFIQR	0	Unmodified	1507.7341	0.73407884	2109	P82909	MRPS36	28S ribosomal protein S36, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	59.475	58.642	2	5.2357E-11	50813	160511_QHF_FH_JSI11i_2	150.04	135.37			1.2069	1.3805	33.32	6	5	Median	1.6647	1.4379	NaN	1	1	Median	0.78212	0.94259	56.403	2	2	Median	1.1558	1.1464	28.158	2	1	Median	1.2439	1.3623	NaN	1	1	Median	498920000	249060000	249860000	77547000	25797000	51750000	140370000	87046000	53325000	197280000	92773000	104510000	83721000	43443000	40278000	35164	2109	33281	216711;216712;216713;216714;216715;216716;216717	292390;292391;292392;292393;292394;292395;292396;292397	292394			8	
LVSQEPK	1	Unmodified	799.44397	0.44396847	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	2	3	3	9.8933	5.6322	2	0.013178	6083	160511_QHF_FH_JSI10i_1	68.214	26.322			0.97728	0.96424	12.315	9	0	Median	1.3793	1.1352	NaN	1	0	Median	0.77251	0.91506	11.125	2	0	Median	0.97728	0.95761	8.7478	3	0	Median	1.0457	1.1196	13.756	3	0	Median	2883300000	1418400000	1464900000	724160000	310550000	413600000	676290000	367990000	308290000	749020000	378030000	370990000	733840000	361790000	372050000	35165	2734	33282	216718;216719;216720;216721;216722;216723;216724;216725;216726	292398;292399;292400;292401;292402;292403;292404	292399			7	
LVSQKPK	2	Acetyl (K)	840.5069	0.50690308	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	18.844	11.498	2	0.053812	7747	160513_QHF_FH_JSI10Kac_3	58.981	18.878			0.3154	0.32382	82.235	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3603	1.6121	NaN	1	0	Median	0.35459	0.34867	NaN	1	0	Median	0.27401	0.29718	1.6874	2	0	Median	49042000	32883000	16160000	0	0	0	12429000	5519000	6910100	19560000	13541000	6019500	17053000	13823000	3230400	35166	1050	33283	216727;216728;216729;216730	292405;292406	292406			2	
LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK	1	Unmodified	3187.5496	0.54957911	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	89.07	89.026	3	8.622E-18	77114	160511_QHF_FH_JSI12i_3	98.002	92.098			0.8825	0.86022	3.06	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8872	0.84181	NaN	1	0	Median	0.87782	0.87904	NaN	1	0	Median	89172000	43929000	45243000	0	0	0	0	0	0	36140000	16779000	19362000	53032000	27151000	25881000	35167	2325	33284	216731;216732	292407;292408;292409;292410;292411	292410			5	
LVSSDPEINTK	1	Unmodified	1201.619	0.6190323	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.72	4	3				5				3	4	3	2	28.03	23.244	2	1.9441E-09	22579	160511_QHF_FH_JSI11i_1	132.01	100.59			0.97074	1.0383	15.301	10	3	Median	1.1189	0.90347	20.093	2	1	Median	0.95924	1.1566	13.235	4	2	Median	0.98547	0.96988	9.2166	2	0	Median	1.0087	1.0913	20.501	2	0	Median	5401800000	2662000000	2739800000	1035300000	487660000	547600000	1886900000	962130000	924800000	1375400000	734560000	640880000	1104200000	477610000	626570000	35168	5497	33285	216733;216734;216735;216736;216737;216738;216739;216740;216741;216742;216743;216744	292412;292413;292414;292415;292416;292417;292418;292419;292420;292421;292422;292423;292424;292425;292426;292427;292428	292412			17	
LVSSHKPVQNQK	2	Unmodified	1363.7572	0.75719754	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			5.5671	5.0575	2	1.7074E-06	3084	160511_QHF_FH_JSI9i_3	130.66	110.89			1.2287	1.1929	73.078	2	0	Median	2.3756	1.9999	NaN	1	0	Median	0.63552	0.7115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65438000	29088000	36350000	34546000	10215000	24331000	30892000	18873000	12019000	0	0	0	0	0	0	35169	226	33286	216745;216746	292429;292430;292431;292432	292431			4	
LVSSHKPVQNQK	2	Acetyl (K)	1405.7678	0.76776223	226	O14965	AURKA	Aurora kinase A	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15.7	0.471								1	2		1		2	18.433	10.683	3	0.012256	6699	160513_QHF_FH_JSI12Kac_6	38.238	30.133			1.0285	1.133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0285	1.133	NaN	1	0	Median	7739300	5432100	2307200	0	0	0	2538800	2538800	0	0	0	0	5200500	2893300	2307200	35170	226	33286	216747;216748;216749	292433;292434;292435;292436	292434	122		4	
LVSSPCCIVTSTYGWTANMER	0	Oxidation (M)	2447.092	0.091951189	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	77.442	77.309	2;3	4.2488E-08	67156	160511_QHF_FH_JSI12i_3	92.457	85.576			1.3866	1.3814	35.239	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1515	1.0767	NaN	1	0	Median	1.6697	1.7723	NaN	1	0	Median	117900000	46335000	71564000	0	0	0	0	0	0	43434000	20826000	22608000	74465000	25509000	48956000	35171	898	33287	216750;216751;216752	292437;292438;292439	292439		471	3	
LVSSPCCIVTSTYGWTANMER	0	Unmodified	2431.097	0.097036567	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.26	5	10	5						4	3	6	9	6	87.049	85.251	2;3	1.1099E-36	76936	160511_QHF_FH_JSI9i_2	227.41	220.04			1.1107	1.1933	14.94	23	1	Median	1.2529	1.0778	8.5646	3	0	Median	1.0412	1.2232	7.8591	6	0	Median	1.0673	1.0162	11.342	8	1	Median	1.2587	1.5987	10.347	6	0	Linear	2518500000	1177600000	1340900000	340870000	164550000	176330000	626360000	307310000	319050000	920610000	449760000	470850000	630640000	255940000	374690000	35172	898	33287	216753;216754;216755;216756;216757;216758;216759;216760;216761;216762;216763;216764;216765;216766;216767;216768;216769;216770;216771;216772;216773;216774;216775;216776	292440;292441;292442;292443;292444;292445;292446;292447;292448;292449;292450;292451;292452;292453;292454;292455;292456;292457;292458;292459;292460;292461;292462;292463;292464;292465;292466;292467;292468;292469;292470;292471;292472;292473;292474;292475;292476;292477;292478;292479;292480;292481;292482;292483;292484;292485;292486;292487;292488;292489;292490	292468			51	
LVSSPELGHDEFSTQALAR	0	Unmodified	2056.0225	0.022532941	234	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		60.381	59.599	3	5.1947E-05	51818	160511_QHF_FH_JSI11i_2	63.302	59.408			1.105	1.1043	7.7456	3	0	Median	1.1053	0.96988	NaN	1	0	Median	0.91597	1.1136	NaN	1	0	Median	1.105	1.1043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131320000	60908000	70414000	27428000	14831000	12597000	36758000	15498000	21260000	67137000	30580000	36557000	0	0	0	35173	234	33288	216777;216778;216779	292491;292492;292493;292494;292495;292496	292493			6	
LVSTDGFMLNFLWVLQQLSTK	1	Unmodified	2439.2872	0.28720382	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.51	97.794	3	3.9995E-12	57877	160513_QHF_FH_JSI10Kac_6	104.63	97.355			0.9446	1.1338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9446	1.1338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93827000	41391000	52436000	0	0	0	93827000	41391000	52436000	0	0	0	0	0	0	35174	647	33289	216780	292497	292497			1	
LVSTLISK	1	Unmodified	859.53787	0.53786886	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.038	38.081	2	0.014211	33236	160511_QHF_FH_JSI9i_2	60.91	35.016			2.7253	2.662	25.251	4	4	Median	2.464	2.162	NaN	1	1	Median	3.0665	3.7336	NaN	1	1	Median	3.0142	3.0543	NaN	1	1	Median	2.0858	2.3201	NaN	1	1	Median	532360000	234900000	297450000	126300000	57784000	68517000	122830000	53784000	69046000	177440000	72722000	104710000	105790000	50615000	55176000	35175	4193	33290	216781;216782;216783;216784	292498;292499;292500;292501	292499			4	
LVSVLQNK	1	Unmodified	899.54402	0.54401687	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.47	2	5	7						1	3	4	5	3	32.724	31.392	2	2.3597E-05	26193	160511_QHF_FH_JSI12i_3	146.94	124.32			2.2624	2.1633	105.2	15	15	Median	4.103	3.5127	96.676	3	3	Plateau	1.1126	1.3078	129.46	4	4	Median	1.8568	1.8039	123.6	5	5	Median	2.7677	2.8226	93.657	3	3	Median	7434900000	2950600000	4484300000	895970000	383560000	512410000	1221500000	562290000	659230000	2413100000	942820000	1470200000	2904300000	1061900000	1842400000	35176	1664	33291	216785;216786;216787;216788;216789;216790;216791;216792;216793;216794;216795;216796;216797;216798;216799	292502;292503;292504;292505;292506;292507;292508;292509;292510;292511;292512;292513;292514;292515;292516;292517;292518	292515			17	
LVSWYTLMEGQEPIAR	0	Unmodified	1891.9502	0.95021962	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	1	4	96.65	96.612	2;3	2.7691E-08	83608	160511_QHF_FH_JSI12i_3	171.05	125.62			0.79888	0.82	19.677	4	1	Median	NaN	NaN	NaN	0	0	Median	0.57306	0.70733	NaN	1	1	Median	1.0446	0.95063	NaN	1	0	Median	0.79888	0.82348	26.915	2	0	Median	147840000	74987000	72851000	0	0	0	9590600	6347300	3243300	32195000	16321000	15874000	106050000	52318000	53734000	35177	5626	33292	216800;216801;216802;216803;216804;216805	292519;292520;292521;292522;292523;292524;292525;292526;292527	292525			9	
LVSYSGVLFFLK	1	Unmodified	1371.7802	0.78022439	266	O15230	LAMA5	Laminin subunit alpha-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	93.956	84.7	2	5.7163E-08	47774	160513_QHF_FH_JSI11Kac_6	110.53	71.758			1.3928	1.6514	15.613	3	1	Plateau	1.3928	1.2101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6879	1.6514	NaN	1	0	Median	1.3423	1.4502	NaN	1	0	Median	214840000	84055000	130780000	67177000	29627000	37550000	0	0	0	89575000	22769000	66806000	58088000	31659000	26429000	35178	266	33293	216806;216807;216808	292528;292529;292530	292528			3	
LVSYTNLTQGAK	1	Unmodified	1293.6929	0.69286595	5456	Q9UP95	SLC12A4	Solute carrier family 12 member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		43.948	43.521	2	3.6915E-05	37415	160511_QHF_FH_JSI11i_2	104.22	90.064			0.87951	0.76744	11.281	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.6728	0.76744	NaN	1	1	Median	0.79794	0.78598	15.834	2	1	Median	NaN	NaN	NaN	0	0	Median	148060000	78052000	70008000	0	0	0	35344000	19129000	16215000	112720000	58924000	53794000	0	0	0	35179	5456	33294	216809;216810;216811	292531;292532;292533	292533			3	
LVSYYYFLR	0	Unmodified	1222.6386	0.63864553	3242	Q7LGA3	HS2ST1	Heparan sulfate 2-O-sulfotransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.73		3	3						5	2	2	4	3	80.211	76.764	2	2.2611E-19	38155	160513_QHF_FH_JSI12Kac_6	187.55	144.42			1.1004	1.0779	11.656	9	4	Median	1.344	1.1647	10.953	2	0	Median	0.84534	1.0132	21.088	2	1	Median	1.151	1.0782	9.7881	3	2	Median	0.9735	1.0086	2.0057	2	1	Median	4565700000	1810800000	2754900000	2002700000	659620000	1343000000	55106000	31144000	23962000	1355500000	590550000	764950000	1152400000	529510000	622940000	35180	3242	33295	216812;216813;216814;216815;216816;216817;216818;216819;216820;216821;216822	292534;292535;292536;292537;292538;292539;292540;292541;292542;292543	292543			10	
LVTAAGDQTAK	1	Unmodified	1073.5717	0.57168818	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.859	12.436	2	0.00020062	10243	160511_QHF_FH_JSI12i_1	81.099	49.795			0.91818	0.9456	17.059	4	0	Median	0.92783	0.75211	NaN	1	0	Median	0.77897	0.932	NaN	1	0	Median	1.1544	1.1399	NaN	1	0	Median	0.90864	0.9594	NaN	1	0	Median	352030000	186350000	165690000	82867000	46560000	36307000	82253000	45473000	36780000	93118000	43861000	49257000	93795000	50454000	43342000	35181	5154	33296	216823;216824;216825;216826	292544;292545;292546;292547;292548	292546			5	
LVTANTIDQK	1	Unmodified	1101.603	0.60298831	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		24.729	24.231	2	0.00053516	21173	160511_QHF_FH_JSI10i_1	87.308	65.222			1.8713	1.6359	51.103	4	4	Median	1.9249	1.5488	NaN	1	1	Median	1.1173	1.3427	85.933	2	2	Median	1.8191	1.7279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	261710000	117130000	144570000	60358000	25232000	35125000	129080000	64413000	64663000	72271000	27487000	44785000	0	0	0	35182	4976	33297	216827;216828;216829;216830	292549;292550;292551;292552	292550			4	
LVTAVSNNTIQVHTFPEGVPDGILTR	0	Unmodified	2777.4712	0.47119286	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	87.167	86.857	3	1.8941E-09	75420	160511_QHF_FH_JSI12i_3	72.532	61.389			1.0104	0.95139	14.826	2	1	Median	0.97804	0.8567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0439	1.0565	NaN	1	1	Median	44670000	16785000	27885000	18482000	7851900	10630000	0	0	0	0	0	0	26189000	8933300	17255000	35183	560	33298	216831;216832	292553;292554;292555;292556;292557	292557			5	
LVTDCVAAMNPDAVLR	0	Unmodified	1743.8648	0.86477543	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		75.293	74.777	2;3	0.00029856	67883	160511_QHF_FH_JSI11i_1	84.892	53.544			0.45368	0.43969	48.985	3	3	Median	0.27623	0.23646	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5356	0.52289	24.508	2	2	Median	NaN	NaN	NaN	0	0	Median	161710000	114770000	46942000	37448000	27868000	9580000	0	0	0	124260000	86903000	37362000	0	0	0	35184	738	33299	216833;216834;216835	292558;292559;292560	292558			3	
LVTDLLQR	0	Unmodified	956.56548	0.56548059	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	51.751	50.775	2	0.029041	44457	160511_QHF_FH_JSI9i_2	41.892	17.737			0.77284	0.71425	31.555	4	0	Median	0.89786	0.75929	NaN	1	0	Median	0.49146	0.60378	NaN	1	0	Median	0.66523	0.67189	NaN	1	0	Median	1.1487	1.2339	NaN	1	0	Median	342900000	179410000	163490000	64983000	32773000	32210000	86476000	59053000	27423000	109560000	59410000	50151000	81882000	28176000	53706000	35185	3203	33300	216836;216837;216838;216839	292561	292561			1	
LVTDLTKVHK	2	Acetyl (K)	1194.6972	0.69722304	50	CON__P02769			yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		48.111	37.757	3	3.9982E-05	21208	160513_QHF_FH_JSI11Kac_5	97.456	83.249		+	0.66334	0.70642	106.39	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3017	1.4989	NaN	1	1	Median	0.33805	0.33292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15815000	12371000	3443900	0	0	0	1356000	169210	1186800	14459000	12202000	2257100	0	0	0	35186	50	33301	216840;216841	292562;292563	292562	21		2	
LVTDQNISENWR	0	Unmodified	1473.7212	0.72120596	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	2	4	2	48.873	48.046	2	1.2625E-41	42142	160511_QHF_FH_JSI9i_2	230.65	212.79			0.83541	0.9632	11.983	7	0	Median	1.122	0.9632	NaN	1	0	Median	0.80589	0.98023	8.9364	2	0	Median	0.88433	0.88264	15.558	2	0	Median	0.86487	0.88601	19.385	2	0	Median	2065700000	1021300000	1044400000	268100000	122980000	145120000	554000000	278250000	275750000	773320000	388320000	385010000	470300000	231780000	238520000	35187	1247	33302	216842;216843;216844;216845;216846;216847;216848;216849;216850;216851	292564;292565;292566;292567;292568;292569;292570;292571;292572;292573;292574;292575;292576;292577;292578	292572			15	
LVTEMGTYATQSALSSSRPTK	1	Unmodified	2227.1154	0.11544705	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.75		6	4						3	4	3	4	2	55.559	52.793	3	1.1705E-18	46124	160511_QHF_FH_JSI9i_2	146.64	132.8			0.87366	0.85703	21.173	13	5	Median	1.0259	0.85255	25.637	4	2	Median	0.75466	0.87603	4.609	3	0	Plateau	0.88043	0.84344	30.943	4	2	Median	0.81129	0.85696	20.879	2	1	Median	2828800000	1515000000	1313800000	1349100000	671780000	677280000	868860000	510750000	358100000	465190000	256230000	208960000	145710000	76229000	69480000	35188	1804	33303	216852;216853;216854;216855;216856;216857;216858;216859;216860;216861;216862;216863;216864	292579;292580;292581;292582;292583;292584;292585;292586;292587;292588;292589;292590;292591;292592;292593;292594;292595;292596;292597;292598;292599;292600;292601	292589			23	
LVTEMGTYATQSALSSSRPTK	1	Oxidation (M)	2243.1104	0.11036167	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			4							2	2			40.983	39.463	3	3.1003E-07	33097	160511_QHF_FH_JSI10i_3	90.464	77.052			1.2248	1.0259	15.786	4	1	Median	1.2668	1.021	2.2975	2	0	Median	1.0211	1.1896	22.552	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203870000	102660000	101210000	112970000	63436000	49534000	90898000	39223000	51675000	0	0	0	0	0	0	35189	1804	33303	216865;216866;216867;216868	292602;292603;292604;292605;292606;292607;292608	292603		1488	7	
LVTFENVR	0	Unmodified	976.53418	0.53418046	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	42.015	40.475	2	0.0054736	33088	160511_QHF_FH_JSI9i_3	73.616	21.829			0.9281	0.92482	19.029	2	2	Median	1.2926	1.058	NaN	1	1	Median	0.66637	0.80839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153280000	82806000	70472000	66709000	30598000	36111000	86569000	52208000	34361000	0	0	0	0	0	0	35190	636	33304	216869;216870;216871	292609;292610;292611	292610			3	
LVTGGYDYDVK	1	Unmodified	1228.5976	0.59756858	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	40.697	40.225	2	7.5096E-06	36551	160511_QHF_FH_JSI12i_1	109.66	80.515			0.38611	0.38622	30.219	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32378	0.31192	NaN	1	0	Median	0.46043	0.47823	NaN	1	0	Median	299630000	211140000	88488000	0	0	0	0	0	0	148090000	106210000	41879000	151540000	104930000	46609000	35191	5063	33305	216872;216873	292612;292613	292613			2	
LVTGTVLAVFGSVR	0	Unmodified	1417.8293	0.82929985	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.225	80.524	2	6.5347E-07	45240	160513_QHF_FH_JSI10Kac_6	109.72	88.273			0.64117	0.76631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64117	0.76631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97063000	58998000	38066000	0	0	0	97063000	58998000	38066000	0	0	0	0	0	0	35192	1638	33306	216874	292614	292614			1	
LVTGTVLAVFGSVRDDGK	1	Unmodified	1832.9996	0.99961265	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			82.066	76.473	3	0.0030617	42243	160513_QHF_FH_JSI10Kac_6	54.964	42.759			0.79363	0.94668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79363	0.94668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97716000	49078000	48638000	0	0	0	97716000	49078000	48638000	0	0	0	0	0	0	35193	1638	33307	216875	292615	292615			1	
LVTLEEFLASTQR	0	Unmodified	1505.809	0.80895834	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	3	2	97.315	97.13	2;3	2.7401E-05	85230	160511_QHF_FH_JSI11i_2	89.301	77.861			0.82051	0.81544	37.626	8	1	Median	0.85898	0.73818	18.668	2	0	Median	0.90245	1.1218	NaN	1	0	Median	0.63671	0.67549	57.463	3	1	Plateau	0.71326	0.75933	5.4908	2	0	Median	172430000	98814000	73615000	37757000	22864000	14893000	21974000	14057000	7917400	71374000	38979000	32395000	41323000	22914000	18409000	35194	2195	33308	216876;216877;216878;216879;216880;216881;216882;216883	292616;292617;292618;292619;292620;292621;292622;292623;292624;292625;292626;292627	292623			12	
LVTLEEFLASTQRK	1	Unmodified	1633.9039	0.90392136	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	2	3	2	1	85.997	84.777	3	2.8054E-05	76504	160511_QHF_FH_JSI11i_3	104.55	86.534			0.96127	1.0207	12.809	8	0	Median	1.2326	1.011	10.71	2	0	Median	0.8445	1.0173	1.6558	3	0	Median	0.95815	0.92269	29.104	2	0	Median	1.0678	1.0712	NaN	1	0	Median	798840000	339120000	459720000	148720000	64751000	83971000	261980000	125070000	136910000	299380000	102910000	196480000	88761000	46392000	42368000	35195	2195	33309	216884;216885;216886;216887;216888;216889;216890;216891	292628;292629;292630;292631;292632;292633;292634;292635;292636;292637;292638;292639;292640;292641;292642	292628			14	
LVTLPVSFAQLK	1	Unmodified	1314.7911	0.79112343	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.81	3	6	9					2	4	6	7	5	6	91.052	88.494	2;3	7.7475E-23	80699	160511_QHF_FH_JSI11i_2	176.38	150.82			1.0516	1.0416	29.621	20	1	Median	1.2072	1.0355	30.459	5	0	Median	0.80824	0.94915	19.092	5	0	Median	1.0622	1.0478	43.932	5	1	Median	1.0472	1.0828	20.683	5	0	Median	6762500000	3353000000	3409500000	1194000000	512120000	681880000	1657300000	906830000	750490000	2113700000	1060900000	1052800000	1797500000	873220000	924260000	35196	3968	33310	216892;216893;216894;216895;216896;216897;216898;216899;216900;216901;216902;216903;216904;216905;216906;216907;216908;216909;216910;216911;216912;216913;216914;216915	292643;292644;292645;292646;292647;292648;292649;292650;292651;292652;292653;292654;292655;292656;292657;292658;292659;292660;292661;292662;292663;292664;292665;292666;292667;292668;292669;292670;292671;292672;292673;292674;292675;292676;292677;292678;292679;292680;292681;292682;292683;292684;292685;292686;292687;292688	292672			46	
LVTLPVSFAQLKNLK	2	Acetyl (K)	1712.0236	0.023642561	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		94.205	84.822	2;3	2.8218E-11	47889	160513_QHF_FH_JSI11Kac_6	176.8	143.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138760000	138760000	0	0	0	0	0	0	0	138760000	138760000	0	0	0	0	35197	3968	33311	216916;216917	292689;292690	292689	3018;3019		2	
LVTLTTTVTELEEDLGTAR	0	Unmodified	2061.0841	0.084130145	502	O75335	PPFIA4	Liprin-alpha-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.608	77.13	2	0.0030906	69861	160511_QHF_FH_JSI10i_1	54.7	40.013			1.3546	1.4511	19.933	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1146	1.2603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6462	1.6707	NaN	1	1	Median	70044000	15875000	54169000	14954000	0	14954000	20754000	10107000	10647000	16108000	0	16108000	18229000	5768000	12461000	35198	502	33312	216918;216919;216920;216921	292691;292692;292693;292694;292695	292693			5	
LVTMQIWDTAGQER	0	Unmodified	1646.8086	0.80864076	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.28		8	5					1		3	4	3	4	72.542	70.949	2;3	5.2201E-52	61794	160511_QHF_FH_JSI12i_3	218.62	193.18			0.9803	1.107	22.12	13	2	Median	1.5757	1.3722	31.049	3	1	Plateau	0.9277	1.1463	31.221	4	1	Median	1.1915	1.0187	15.926	3	0	Plateau	0.96439	1.0336	11.896	3	0	Median	1291500000	615140000	676340000	185880000	74018000	111860000	254800000	129980000	124820000	480870000	230530000	250340000	369930000	180610000	189320000	35199	1728	33313	216922;216923;216924;216925;216926;216927;216928;216929;216930;216931;216932;216933;216934;216935	292696;292697;292698;292699;292700;292701;292702;292703;292704;292705;292706;292707;292708;292709;292710;292711;292712;292713;292714;292715	292713			19	
LVTMQIWDTAGQER	0	Oxidation (M)	1662.8036	0.80355538	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	1	0	By MS/MS		By MS/MS		2	0		2								1		1		76.443	75.741	2	0.020462	66684	160511_QHF_FH_JSI11i_2	44.863	21.51			0.91871	0.83638	18.771	2	0	Median	0.86564	0.73242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97503	0.95509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157020000	74848000	82177000	92189000	46206000	45983000	0	0	0	64835000	28642000	36193000	0	0	0	35200	1728	33313	216936;216937	292716	292716		1416	1	
LVTNLSGQLSELK	1	Unmodified	1400.7875	0.78749461	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		1	1	3	1	66.398	65.591	2	7.6039E-06	58162	160511_QHF_FH_JSI10i_2	125.28	88.092			1.1218	1.2453	16.151	5	0	Median	1.463	1.2792	NaN	1	0	Median	1.0885	1.3445	NaN	1	0	Median	1.0066	0.98529	12.115	2	0	Median	1.1384	1.2453	NaN	1	0	Median	313620000	149370000	164240000	57609000	25812000	31797000	77782000	34138000	43644000	116300000	55581000	60719000	61923000	33840000	28083000	35201	2549	33314	216938;216939;216940;216941;216942;216943	292717;292718;292719;292720;292721;292722;292723;292724;292725	292725			8	
LVTPEDDELDELRPGQR	0	Unmodified	1980.9752	0.9752484	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	58.289	57.86	3	0.00017802	51380	160511_QHF_FH_JSI11i_3	58.159	52.73			0.82712	0.89624	10.842	5	3	Median	1.064	0.89771	NaN	1	0	Median	0.73278	0.89624	NaN	1	0	Median	0.89958	0.85238	12.321	2	2	Median	0.71412	0.72223	NaN	1	1	Median	308160000	159450000	148710000	50426000	20660000	29766000	54459000	34281000	20178000	168000000	82851000	85148000	35274000	21656000	13618000	35202	2280	33315	216944;216945;216946;216947;216948	292726;292727;292728;292729	292727			4	
LVTPHGESEQIGVIPSK	1	Unmodified	1789.9574	0.95741349	3887	Q92796	DLG3	Disks large homolog 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		48.279	47.799	3	0.00012582	42392	160511_QHF_FH_JSI11i_3	62.475	51.84			0.86326	0.90501	18.153	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6545	0.79599	NaN	1	1	Median	1.1386	1.029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101310000	55084000	46226000	0	0	0	49093000	26751000	22342000	52216000	28332000	23884000	0	0	0	35203	3887	33316	216949;216950	292730;292731	292730			2	
LVTQDTENELK	1	Unmodified	1288.6511	0.65106071	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.849	28.259	2	8.2525E-05	25248	160511_QHF_FH_JSI12i_1	90.108	51.086			0.87266	0.96477	51.582	4	1	Median	0.48484	0.39606	NaN	1	1	Median	0.68882	0.82317	NaN	1	0	Median	1.3152	1.2314	NaN	1	0	Median	1.1055	1.1307	NaN	1	0	Median	274140000	139110000	135030000	52699000	38856000	13843000	82326000	48930000	33396000	70621000	25303000	45318000	68492000	26018000	42473000	35204	1530;1750	33317	216951;216952;216953;216954	292732;292733;292734;292735;292736;292737;292738	292734			7	
LVTREEFAIMQTPAGELYDK	1	Unmodified	2310.1566	0.15658358	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		79.04	78.202	3	2.3136E-08	69734	160511_QHF_FH_JSI11i_3	103.26	85.668			0.99392	0.97747	15.344	5	1	Median	1.2228	1.0351	8.107	2	1	Median	0.83104	0.99314	20.209	2	0	Median	0.83399	0.79975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	508700000	248360000	260330000	87686000	37950000	49737000	177230000	95952000	81279000	243780000	114460000	129320000	0	0	0	35205	3860	33318	216955;216956;216957;216958;216959	292739;292740;292741;292742;292743;292744;292745;292746	292739			8	
LVTSGAESGNLNTSPSSNQTR	0	Unmodified	2119.0142	0.014153099	3672	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.948	28.675	2	2.2895E-17	24968	160511_QHF_FH_JSI9i_1	121.31	108.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35206	3672	33319	216960	292747	292747			1	
LVTSIGDVVNHDPVVGDR	0	Unmodified	1890.9799	0.97993984	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	64.478	63.957	3	3.0006E-07	56796	160511_QHF_FH_JSI11i_3	94.387	86.876			1.1124	1.1369	14.446	5	0	Median	1.0265	0.87215	NaN	1	0	Median	0.82878	0.99696	NaN	1	0	Median	1.2563	1.2171	1.3673	2	0	Median	1.1124	1.1369	NaN	1	0	Median	497990000	230750000	267240000	60664000	26824000	33839000	74094000	38362000	35732000	225810000	101100000	124710000	137420000	64463000	72955000	35207	992	33320	216961;216962;216963;216964;216965	292748;292749;292750;292751;292752	292750			5	
LVTSPCCIVTSTYGWTANMER	0	Unmodified	2445.1127	0.11268663	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.74	3.19	4	10	4						1	2	5	7	5	90.532	89.539	2;3	7E-58	78705	160511_QHF_FH_JSI12i_3	223.96	203.95			1.1816	1.1476	20.285	14	1	Median	1.266	1.0874	4.0933	2	0	Median	1.0605	1.0577	12.596	3	0	Plateau	0.9806	0.96223	14.11	4	1	Median	1.4224	1.4818	10.789	5	0	Median	1090500000	520480000	570000000	80017000	32129000	47889000	217150000	103840000	113310000	373230000	204770000	168470000	420080000	179740000	240340000	35208	880	33321	216966;216967;216968;216969;216970;216971;216972;216973;216974;216975;216976;216977;216978;216979;216980;216981;216982;216983;216984	292753;292754;292755;292756;292757;292758;292759;292760;292761;292762;292763;292764;292765;292766;292767;292768;292769;292770;292771;292772;292773;292774;292775;292776;292777;292778;292779;292780;292781	292779			27	
LVTSPCCIVTSTYGWTANMER	0	Oxidation (M)	2461.1076	0.10760125	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	80.729	80.503	3	9.4294E-07	69909	160511_QHF_FH_JSI12i_3	79.467	71.279			2.3575	2.2313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3575	2.2313	NaN	1	0	Median	31324000	12984000	18340000	0	0	0	0	0	0	0	0	0	31324000	12984000	18340000	35209	880	33321	216985	292782	292782		442	1	
LVTTVTEIAG	0	Unmodified	1002.5597	0.55972651	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	5.33	4			2	3	1				1	4	2	3	64.023	58.086	2	5.1574E-08	24774	160513_QHF_FH_JSI10Kac_2	119.89	101.9			0.9369	1.044	29.477	10	1	Median	1.3838	1.1423	NaN	1	0	Median	0.82075	0.94072	31.199	4	1	Median	0.84391	0.81384	47.315	2	0	Median	1.045	1.1079	15.305	3	0	Median	2424600000	1070900000	1353800000	477910000	189540000	288370000	651560000	336290000	315270000	722130000	278140000	443990000	573030000	266890000	306140000	35210	2169	33322	216986;216987;216988;216989;216990;216991;216992;216993;216994;216995	292783;292784;292785;292786;292787;292788;292789;292790;292791;292792;292793;292794;292795	292790			13	
LVTVWSAPNYCYR	0	Unmodified	1627.7817	0.78169773	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.75		5	3						6	3	4	3	4	71.602	67.79	2	3.3354E-47	36868	160513_QHF_FH_JSI10Kac_6	224.02	208.65			1.0221	1.0671	33.137	12	9	Median	1.8662	1.6265	48.832	2	2	Median	0.85544	1.0378	24.875	4	3	Median	0.97955	0.9773	2.5526	3	2	Median	1.5108	1.6124	45.992	3	2	Plateau	467300000	239240000	228060000	27883000	11623000	16260000	177480000	91126000	86352000	160440000	90696000	69742000	101500000	45796000	55703000	35211	160	33323	216996;216997;216998;216999;217000;217001;217002;217003;217004;217005;217006;217007;217008;217009	292796;292797;292798;292799;292800;292801;292802;292803;292804;292805;292806;292807;292808;292809;292810;292811;292812	292812			17	
LVVADREEVEQEADNILK	1	Unmodified	2069.0641	0.064063405	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	75.172	74.626	2;3	2.2295E-07	66650	160511_QHF_FH_JSI11i_3	128.9	85.817			0.86976	1.0052	33.382	7	3	Median	1.191	1.0052	NaN	1	0	Median	0.82348	1.0003	8.1087	2	2	Median	0.7409	0.70107	52.98	2	0	Median	1.0008	1.0833	39.826	2	1	Median	1441200000	766080000	675100000	239170000	111020000	128150000	399490000	211750000	187740000	473360000	246050000	227310000	329160000	197260000	131900000	35212	4680	33324	217010;217011;217012;217013;217014;217015;217016	292813;292814;292815;292816;292817;292818;292819;292820;292821;292822;292823;292824;292825;292826;292827	292818			15	
LVVADTR	0	Unmodified	772.4443	0.44430282	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.53	5	4	3				2	2		5	4	3	4	17.855	14.364	2	0.00042336	14201	160511_QHF_FH_JSI10i_1	114.59	51.607			1.0823	1.0746	30.497	13	1	Median	1.2401	0.71298	41.382	4	1	Median	0.90046	1.0746	15.197	3	0	Median	1.1735	1.18	2.5872	2	0	Median	0.99186	1.0972	4.9531	4	0	Median	3919300000	2031100000	1888200000	1139400000	613390000	526040000	593320000	331390000	261930000	936980000	438660000	498320000	1249600000	647660000	601890000	35213	1208	33325	217017;217018;217019;217020;217021;217022;217023;217024;217025;217026;217027;217028;217029;217030;217031;217032	292828;292829;292830;292831;292832;292833;292834;292835;292836;292837;292838;292839;292840;292841;292842;292843;292844	292836			17	
LVVAHMTK	1	Unmodified	897.51061	0.51060825	5733	Q9Y6K0;Q8WUD6	CEPT1;CHPT1	Choline/ethanolaminephosphotransferase 1;Cholinephosphotransferase 1	yes	no	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			4							2		1	1	18.821	18.227	2;3	0.0068676	14742	160511_QHF_FH_JSI12i_3	41.876	31.003			0.99104	0.92006	17.093	4	1	Median	1.0249	0.84195	23.915	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.0326	NaN	1	0	Median	0.84296	0.84899	NaN	1	0	Median	464100000	216930000	247160000	129090000	53890000	75203000	0	0	0	139120000	73075000	66045000	195890000	89970000	105920000	35214	5733	33326	217033;217034;217035;217036	292845;292846	292846			2	
LVVALSR	0	Unmodified	756.48577	0.48577371	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.64		3	3					1	4	3	2	3	3	42.783	38.052	2	0.00069254	20957	160513_QHF_FH_JSI10Kac_6	114.19	20.022			1.0666	0.993	14.452	11	2	Median	1.1707	0.99197	3.0456	3	1	Plateau	0.97415	1.1173	14.212	2	1	Median	1.0666	0.993	18.523	3	0	Median	0.83305	0.82418	7.2917	3	0	Median	840390000	435210000	405180000	101770000	51263000	50509000	153970000	85194000	68781000	283990000	139590000	144400000	300660000	159160000	141490000	35215	4337	33327	217037;217038;217039;217040;217041;217042;217043;217044;217045;217046;217047	292847;292848;292849;292850;292851;292852;292853;292854;292855	292855			9	
LVVDLTDIDPDVAYSSVPYEK	1	Unmodified	2337.1628	0.1627744	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	100.94	100.84	2;3	1.0147E-85	91387	160511_QHF_FH_JSI12i_1	251	216.62			0.76246	0.83192	9.7691	7	2	Median	0.99992	0.83192	NaN	1	1	Median	0.71456	0.83107	8.522	2	1	Median	0.84787	0.82336	18.031	2	0	Median	0.81742	0.8512	12.766	2	0	Median	730420000	406660000	323770000	38189000	22427000	15762000	252150000	147310000	104840000	176280000	92152000	84128000	263810000	144770000	119040000	35216	943	33328	217048;217049;217050;217051;217052;217053;217054	292856;292857;292858;292859;292860;292861;292862;292863;292864;292865;292866;292867	292862			12	
LVVDSHVQYR	0	Unmodified	1214.6408	0.6407708	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.61		4	4					1	5	4	2	5	3	33.792	29.449	2;3	7.2249E-06	25414	160511_QHF_FH_JSI11i_3	96.618	69.946			0.9768	0.93026	23.677	14	0	Median	1.1053	0.92354	32.641	4	0	Median	0.8286	0.97093	12.059	2	0	Median	1.0334	1.0116	22.588	5	0	Median	0.84228	0.91182	21.047	3	0	Median	1006300000	510730000	495620000	148060000	77905000	70152000	164670000	89336000	75333000	418880000	204710000	214160000	274740000	138770000	135970000	35217	3101	33329	217055;217056;217057;217058;217059;217060;217061;217062;217063;217064;217065;217066;217067;217068	292868;292869;292870;292871;292872;292873;292874;292875;292876;292877;292878;292879;292880;292881;292882	292869			15	
LVVFPTDDISLK	1	Unmodified	1345.7493	0.74931819	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	85.426	84.852	2	2.6657E-05	77333	160511_QHF_FH_JSI11i_1	108.67	80.268			0.86201	0.91372	14.725	8	1	Median	0.91327	0.75903	22.674	2	0	Median	0.69226	0.84265	15.559	2	0	Median	0.94313	0.91249	6.8423	2	0	Median	0.90922	0.97267	5.2856	2	1	Median	392450000	215350000	177110000	76095000	40149000	35946000	109070000	71008000	38062000	117400000	59699000	57705000	89882000	44489000	45393000	35218	1388	33330	217069;217070;217071;217072;217073;217074;217075;217076	292883;292884;292885;292886;292887;292888;292889;292890;292891;292892;292893;292894;292895;292896;292897	292885			14	
LVVLATPQVSDSMR	0	Unmodified	1514.8127	0.81266351	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		66.685	66.11	2	4.0018E-06	58609	160511_QHF_FH_JSI10i_2	87.298	50.186			0.87238	0.86269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87238	0.86269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47956000	26596000	21360000	0	0	0	0	0	0	47956000	26596000	21360000	0	0	0	35219	1601	33331	217077;217078;217079	292898;292899;292900;292901	292901			4	
LVVLATPQVSDSMRK	1	Unmodified	1642.9076	0.90762652	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		57.487	56.459	3	5.2114E-05	47173	160511_QHF_FH_JSI10i_3	86.497	75.552			1.2009	1.3328	66.594	3	1	Median	1.596	1.3328	NaN	1	0	Median	1.2009	1.3786	NaN	1	0	Median	0.46728	0.42789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	151290000	80641000	70646000	34991000	16649000	18343000	46356000	22180000	24177000	69939000	41813000	28127000	0	0	0	35220	1601	33332	217080;217081;217082	292902;292903;292904;292905;292906	292904			5	
LVVLDYIIR	0	Unmodified	1102.675	0.67503104	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2	1	1	2	1	90.943	87.037	2	0.01462	43261	160513_QHF_FH_JSI9Kac_6	60.91	34.308			1.0135	1.0062	52.164	5	0	Median	2.1034	1.7868	NaN	1	0	Median	0.83143	1.0062	NaN	1	0	Median	1.7945	1.7624	80.678	2	0	Median	0.87977	0.93479	NaN	1	0	Median	115440000	41792000	73653000	42335000	12121000	30213000	7984600	3728500	4256100	52140000	17941000	34199000	12985000	8001000	4984400	35221	4422	33333	217083;217084;217085;217086;217087	292907;292908;292909;292910;292911	292910			5	
LVVLFGVGK	1	Unmodified	930.59024	0.59023878	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.624	74.334	2	0.0050397	64560	160511_QHF_FH_JSI12i_3	65.038	54.165			0.87192	0.94871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87192	0.94871	NaN	1	1	Median	9630400	3761500	5868900	0	0	0	0	0	0	0	0	0	9630400	3761500	5868900	35222	3930	33334	217088	292912	292912			1	
LVVLGIRPIR	0	Unmodified	1134.7601	0.76009807	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	70.375	61.734	3	0.0016624	33751	160513_QHF_FH_JSI10Kac_6	64.04	47.837			0.92082	1.0744	14.285	3	0	Plateau	1.0717	0.92664	NaN	1	0	Median	0.89412	1.0744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.233	NaN	1	0	Median	183980000	100690000	83290000	45955000	21961000	23994000	123830000	72751000	51079000	0	0	0	14197000	5980400	8216400	35223	3904	33335	217089;217090;217091	292913;292914	292914			2	
LVVLGSGGVGK	1	Unmodified	984.59678	0.59678072	1946;2023	P61224;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.79	6.25		4	4				3	4	4	3	6	5	5	49.147	42.927	2	3.2137E-13	37870	160511_QHF_FH_JSI11i_3	149.94	97.253			0.99509	1.0382	51.868	19	0	Median	1.0175	0.85617	127.63	3	0	Median	0.81723	0.97718	32.375	6	0	Median	0.99509	0.99501	16.103	5	0	Median	1.1331	1.2255	22.287	5	0	Median	4452500000	2192300000	2260200000	652150000	319280000	332870000	892000000	438300000	453700000	1468000000	705360000	762610000	1440400000	729380000	711000000	35224	1946;2023	33336	217092;217093;217094;217095;217096;217097;217098;217099;217100;217101;217102;217103;217104;217105;217106;217107;217108;217109;217110	292915;292916;292917;292918;292919;292920;292921;292922;292923;292924;292925;292926;292927;292928;292929;292930;292931;292932;292933;292934;292935;292936;292937;292938;292939	292915			25	
LVVLPFR	0	Unmodified	842.53781	0.53780928	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.268	69.457	2	0.0045813	61742	160511_QHF_FH_JSI11i_3	98.03	88.281			0.83671	0.82027	8.5141	4	0	Median	1.1329	0.92488	NaN	1	0	Median	0.70239	0.79445	NaN	1	0	Median	0.83122	0.76023	NaN	1	0	Median	0.84223	0.84692	NaN	1	0	Median	120510000	59794000	60714000	29179000	11835000	17344000	23214000	13589000	9625800	32016000	16886000	15130000	36099000	17485000	18614000	35225	2297	33337	217111;217112;217113;217114	292940;292941;292942;292943	292940			4	
LVVNFDMPSSMDEYVHQIGR	0	Unmodified	2336.0929	0.092937467	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	95.909	95.777	3	2.3658E-10	83123	160511_QHF_FH_JSI12i_3	120.11	112.84			1.0624	1.157	12.437	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95578	1.1514	NaN	1	0	Median	1.1051	1.0535	19.383	2	0	Median	1.1659	1.1627	NaN	1	0	Median	114570000	51685000	62889000	0	0	0	14966000	6389000	8577300	45903000	21438000	24466000	53704000	23858000	29846000	35226	2939	33338	217115;217116;217117;217118	292944;292945;292946;292947;292948	292948			5	
LVVPASQCGSLIGK	1	Unmodified	1427.7806	0.7806351	2657;1893	P57721;Q15366	PCBP3;PCBP2	Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.81	2.98	4	6	5				1			3	3	6	4	58.508	57.061	2;3	1.0571E-09	51279	160511_QHF_FH_JSI10i_1	145.55	118.25			0.94543	1.0045	33.691	15	2	Median	1.1949	1.0045	42.233	3	0	Median	0.81251	0.99252	14.869	3	0	Plateau	0.90319	0.8983	33.274	6	2	Median	1.2356	1.3926	25.725	3	0	Median	5221600000	2687300000	2534300000	527170000	282260000	244910000	1151400000	627670000	523690000	2024800000	1076800000	947970000	1518300000	700550000	817780000	35227	1893;2657	33339	217119;217120;217121;217122;217123;217124;217125;217126;217127;217128;217129;217130;217131;217132;217133;217134	292949;292950;292951;292952;292953;292954;292955;292956;292957;292958;292959;292960;292961;292962;292963;292964;292965;292966;292967;292968;292969;292970;292971;292972;292973;292974;292975;292976	292961			28	
LVVPATQCGSLIGK	1	Unmodified	1441.7963	0.79628516	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.86	6	5	5				3	4		4	6	8	5	63.85	59.947	2;3	1.0676E-09	54152	160511_QHF_FH_JSI10i_1	145.46	54.63			1.0478	1.1064	28.566	22	2	Median	1.3393	1.0961	16.113	4	0	Median	0.86744	1.0399	11.438	6	0	Median	1.0394	0.98269	24.664	7	2	Median	1.3821	1.5568	27.199	5	0	Median	6352100000	3130500000	3221600000	642640000	257390000	385250000	1421400000	818770000	602650000	2541700000	1281300000	1260400000	1746300000	773020000	973250000	35228	2656	33340	217135;217136;217137;217138;217139;217140;217141;217142;217143;217144;217145;217146;217147;217148;217149;217150;217151;217152;217153;217154;217155;217156;217157	292977;292978;292979;292980;292981;292982;292983;292984;292985;292986;292987;292988;292989;292990;292991;292992;292993;292994;292995;292996;292997;292998;292999;293000;293001;293002;293003;293004;293005;293006;293007;293008;293009;293010;293011;293012;293013;293014	292991			38	
LVVPCHK	1	Unmodified	851.46874	0.46874343	845	P06241	FYN	Tyrosine-protein kinase Fyn	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	15.486	15.17	3	0.031005	12313	160511_QHF_FH_JSI11i_3	28.107	20.877			1.0778	1.081	66.897	3	0	Median	NaN	NaN	NaN	0	0	Median	2.2512	2.5136	NaN	1	0	Median	0.72284	0.67072	NaN	1	0	Median	1.0778	1.081	NaN	1	0	Median	151110000	71040000	80075000	0	0	0	21136000	7032700	14103000	41180000	23158000	18022000	88799000	40850000	47949000	35229	845	33341	217158;217159;217160	293015;293016;293017	293015			3	
LVVQSAAPGSK	1	Unmodified	1055.5975	0.597509	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	22.646	22.319	2	0.018277	19279	160511_QHF_FH_JSI11i_1	60.518	35.596			0.67514	0.67643	3.7293	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72794	0.6945	NaN	1	0	Median	0.62618	0.65882	NaN	1	0	Median	87588000	51400000	36189000	0	0	0	0	0	0	38723000	19427000	19295000	48865000	31972000	16893000	35230	1213	33342	217161;217162	293018;293019	293018			0	
LVVSTQTALA	0	Unmodified	1001.5757	0.57571092	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	2	1	1	58.043	55.615	2	0.00049631	22462	160513_QHF_FH_JSI10Kac_1	89.142	70.36		+	0.80485	0.92849	33.079	5	0	Median	1.2824	1.0572	NaN	1	0	Median	0.8717	1.0162	12.772	2	0	Median	0.55328	0.53466	NaN	1	0	Median	0.60229	0.61578	NaN	1	0	Median	387830000	225950000	161890000	46606000	26398000	20208000	119250000	53596000	65651000	105080000	66668000	38411000	116900000	79283000	37618000	35231	50	33343	217163;217164;217165;217166;217167	293020;293021;293022;293023;293024	293024			5	
LVVTNLDK	1	Unmodified	900.52803	0.52803245	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.25	0.433	3	1									2	1	1	36.369	35.827	2	0.0040696	32048	160511_QHF_FH_JSI11i_1	69.825	18.479			0.83343	0.90266	8.5297	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70879	0.84716	12.57	2	0	Median	0.93204	0.88	NaN	1	0	Median	0.90128	0.93143	NaN	1	0	Median	254920000	140610000	114300000	0	0	0	129150000	76721000	52431000	71857000	37148000	34710000	53908000	26745000	27163000	35232	5507	33344	217168;217169;217170;217171	293025	293025			1	
LVVVDENDVVK	1	Unmodified	1227.6711	0.67106787	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	51.505	50.832	2	0.00038239	45790	160511_QHF_FH_JSI10i_1	72.607	45.477			1.0737	1.0545	7.0987	4	0	Median	1.32	1.0809	NaN	1	0	Median	0.81941	0.95643	NaN	1	0	Median	1.1505	1.1284	NaN	1	0	Median	1.0021	1.0287	NaN	1	0	Median	370290000	189790000	180500000	80916000	31834000	49082000	97426000	53534000	43892000	91116000	51566000	39550000	100830000	52858000	47974000	35233	1825	33345	217172;217173;217174;217175	293026;293027;293028	293028			3	
LVVVFGGTGAQGGSVAR	0	Unmodified	1573.8576	0.85763986	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.56		1	5						5	2	3	2	4	64.778	59.385	2	2.9364E-55	32588	160513_QHF_FH_JSI10Kac_6	191.26	174.23			1.0011	1.043	17.246	9	4	Median	1.2233	1.0451	0.29624	2	0	Median	0.89484	1.0425	11.407	2	1	Median	1.1516	1.0992	16.082	2	0	Median	0.86259	0.93988	30.605	3	3	Median	226070000	113370000	112710000	40803000	18329000	22473000	74915000	36483000	38431000	70710000	36917000	33793000	39645000	21636000	18009000	35234	4844	33346	217176;217177;217178;217179;217180;217181;217182;217183;217184;217185;217186	293029;293030;293031;293032;293033;293034;293035;293036;293037;293038;293039;293040;293041;293042	293042			14	
LVVVGAGGVGK	1	Unmodified	954.58622	0.58621603	785;786	P01111;P01116	NRAS;KRAS	GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.31	4	4	3				2	2	2	3	6	5	3	42.428	38.37	2	5.7239E-05	33936	160511_QHF_FH_JSI10i_2	94.302	69.671			0.94633	0.9645	15.661	17	2	Median	1.2102	1.0105	10.216	3	0	Median	0.78801	0.94631	19.231	6	1	Median	0.94633	0.9322	16.478	5	1	Median	0.96027	1.0333	17.373	3	0	Median	1211000000	608300000	602720000	215110000	97470000	117640000	333150000	182470000	150680000	413550000	196340000	217210000	249200000	132020000	117180000	35235	785;786	33347	217187;217188;217189;217190;217191;217192;217193;217194;217195;217196;217197;217198;217199;217200;217201;217202;217203	293043;293044;293045;293046;293047;293048;293049;293050;293051;293052;293053;293054;293055;293056;293057;293058;293059;293060	293059			17	
LVVVGGGGVGK	1	Unmodified	940.57057	0.57056597	1977;966	P10301;P62070	RRAS;RRAS2	Ras-related protein R-Ras;Ras-related protein R-Ras2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.66	2	4	5					4		3	4	4	4	36.599	33.42	2	0.00012261	29273	160511_QHF_FH_JSI11i_3	84.743	73.375			0.82451	0.92419	38.949	15	3	Median	0.76726	0.6539	39.741	3	1	Median	0.77822	0.91484	7.0644	4	0	Median	0.96194	0.93269	45.4	4	0	Median	0.86426	0.95437	47.587	4	2	Median	1117200000	593970000	523260000	183730000	92798000	90934000	263350000	156980000	106370000	397760000	213530000	184230000	272390000	130660000	141720000	35236	966;1977	33348	217204;217205;217206;217207;217208;217209;217210;217211;217212;217213;217214;217215;217216;217217;217218	293061;293062;293063;293064;293065;293066;293067;293068;293069;293070;293071;293072;293073;293074;293075;293076;293077;293078;293079;293080	293061			20	
LVVVLCNLK	1	Unmodified	1056.6365	0.63653704	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.495								4	3	2	1	3	1	75.064	65.198	2	0.00014996	34153	160513_QHF_FH_JSI12Kac_6	105.12	70.309			1.0626	1.0678	34.406	6	2	Median	1.4732	1.2542	NaN	1	0	Median	0.81616	0.99262	NaN	1	0	Median	1.2106	1.1295	50.633	3	2	Median	0.93271	1.0094	NaN	1	0	Median	124090000	64175000	59919000	26726000	14546000	12180000	6642400	3661200	2981200	66589000	33424000	33166000	24136000	12544000	11592000	35237	1823	33349	217219;217220;217221;217222;217223;217224;217225	293081;293082;293083;293084;293085;293086	293086			6	
LVVVLCNLKPQK	2	Unmodified	1409.8428	0.84284142	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.06			7						15	4	7	6	5	64.407	58.726	2;3	1.3525E-13	31832	160513_QHF_FH_JSI11Kac_6	128.69	102.75			0.42781	0.47221	52.839	10	10	Median	0.78861	0.66057	NaN	1	1	Median	0.59832	0.70807	52.888	4	4	Median	0.31045	0.30245	49.221	4	4	Median	0.37312	0.38802	NaN	1	1	Median	2482500000	1456300000	1026200000	193980000	88063000	105920000	1078600000	563620000	514960000	1088600000	727980000	360660000	121280000	76661000	44623000	35238	1823	33350	217226;217227;217228;217229;217230;217231;217232;217233;217234;217235;217236;217237;217238;217239;217240;217241;217242;217243;217244;217245;217246;217247	293087;293088;293089;293090;293091;293092;293093;293094;293095;293096;293097;293098;293099;293100;293101;293102;293103;293104;293105;293106;293107;293108	293095			22	
LVVVLNK	1	Unmodified	783.52182	0.52182486	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0	By MS/MS		By MS/MS		15.5	0.5								1	1	1		1		52.266	42.27	2	0.023499	23432	160513_QHF_FH_JSI11Kac_5	77.72	30.674			0.13568	0.12445	13.148	2	2	Median	0.16007	0.13658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.11501	0.1134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89781000	78628000	11153000	25339000	20969000	4370500	0	0	0	64441000	57659000	6782600	0	0	0	35239	1896	33351	217248;217249	293109;293110	293109			2	
LVVVSVSPQSR	0	Unmodified	1169.6768	0.67682195	4747	Q9H6Q4	NARFL	Cytosolic Fe-S cluster assembly factor NARFL	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.707							2	4	2	2	3	2	1	53.373	42.944	2	2.3896E-05	23758	160513_QHF_FH_JSI11Kac_5	102.07	77.144			0.95527	1.0413	5.4304	6	0	Median	1.2711	1.0683	NaN	1	0	Median	0.8669	1.0313	0.16676	2	0	Median	1.0482	1.0358	11.737	2	0	Median	0.94028	1.0501	NaN	1	0	Median	58111000	30106000	28005000	11981000	7184300	4796300	20887000	11279000	9608200	21014000	9586900	11427000	4229800	2056400	2173400	35240	4747	33352	217250;217251;217252;217253;217254;217255;217256;217257	293111;293112;293113;293114;293115;293116;293117;293118;293119;293120;293121;293122	293116			12	
LVVVWTR	0	Unmodified	871.52797	0.52797287	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.791	53.551	2	0.0062112	29466	160513_QHF_FH_JSI10Kac_6	92.467	51.781			1.01	1.0106	3.9659	4	0	Median	1.1947	1.0182	NaN	1	0	Median	0.85071	1.003	NaN	1	0	Median	1.1078	1.0649	NaN	1	0	Median	0.92073	0.96761	NaN	1	0	Median	525870000	265420000	260440000	91704000	37053000	54651000	246760000	131210000	115550000	116540000	53260000	63277000	70864000	43902000	26962000	35241	3517	33353	217258;217259;217260;217261	293123;293124;293125;293126;293127	293127			5	
LVVWAADR	0	Unmodified	928.51305	0.51305109	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	55.637	45.847	2	0.00079279	24874	160513_QHF_FH_JSI11Kac_6	112.17	63.668			1.1685	1.1777	1.3555	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2192	1.189	NaN	1	1	Median	1.1199	1.1664	NaN	1	1	Median	68001000	38738000	29263000	0	0	0	0	0	0	31942000	16987000	14955000	36059000	21751000	14308000	35242	4223	33354	217262;217263	293128;293129	293128			2	
LVVWEAAQNGADEGTELASNTHNIAQDLSNK	1	Unmodified	3294.5753	0.57527659	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	90.331	90.299	3	5.5198E-17	80502	160511_QHF_FH_JSI11i_3	91.113	89.109			0.82035	0.8215	19.92	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99299	0.94576	NaN	1	0	Median	0.67773	0.71357	NaN	1	1	Median	40184000	22894000	17290000	0	0	0	0	0	0	26617000	12808000	13809000	13567000	10086000	3481000	35243	2950	33355	217264;217265;217266	293130;293131;293132;293133	293131			4	
LVWIETPTNPTQK	1	Unmodified	1525.814	0.81404372	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	6.13	5	7						5		2	4	5	6	68.553	65.366	2;3	3.9041E-10	56568	160511_QHF_FH_JSI12i_2	143.61	115.6			0.94112	0.95295	43.711	16	2	Median	1.5323	1.3247	53.622	2	0	Median	1.0279	1.1952	46.014	4	0	Median	0.83078	0.82407	33.751	5	0	Median	0.89506	0.90194	45.491	5	2	Median	1078300000	575370000	502970000	135690000	65345000	70344000	240590000	105520000	135070000	420880000	242670000	178210000	281170000	161830000	119340000	35244	1397	33356	217267;217268;217269;217270;217271;217272;217273;217274;217275;217276;217277;217278;217279;217280;217281;217282;217283	293134;293135;293136;293137;293138;293139;293140;293141;293142;293143;293144;293145;293146;293147;293148;293149;293150;293151;293152;293153;293154;293155	293137			20	
LVWVPSDK	1	Unmodified	942.51747	0.51746776	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.533	49.007	2	0.0031291	42258	160511_QHF_FH_JSI11i_2	81.297	81.297			0.44445	0.44997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44445	0.44997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	864040000	580730000	283310000	0	0	0	0	0	0	864040000	580730000	283310000	0	0	0	35245	1436	33357	217284	293156	293156			1	
LVYAIFLK	1	Unmodified	965.59499	0.5949898	4427	Q9BTY2	FUCA2	Plasma alpha-L-fucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	82.439	73.751	2	0.0010069	41220	160513_QHF_FH_JSI10Kac_6	103.29	69.735			1.1471	0.99199	25.196	5	0	Median	1.1104	0.9464	6.6538	2	0	Median	1.1471	1.368	NaN	1	0	Median	0.81994	0.76792	NaN	1	0	Median	1.2924	1.3417	NaN	1	0	Median	896270000	464140000	432120000	259570000	107120000	152450000	322150000	202960000	119190000	197890000	107630000	90251000	116650000	46426000	70229000	35246	4427	33358	217285;217286;217287;217288;217289	293157;293158;293159;293160;293161;293162	293161			6	
LVYDRETGKPK	2	Unmodified	1304.7089	0.70885036	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		12.964	12.364	3;4	0.00012997	9731	160511_QHF_FH_JSI11i_3	71.555	60.63			0.81767	0.90754	50.584	7	3	Median	1.704	1.3971	80.338	3	2	Median	0.63594	0.71947	32.84	2	1	Median	0.92504	0.88293	18.797	2	0	Median	NaN	NaN	NaN	0	0	Median	1134800000	615820000	518930000	327680000	157100000	170580000	301940000	164650000	137290000	505140000	294070000	211070000	0	0	0	35247	1401;4636	33359	217290;217291;217292;217293;217294;217295;217296	293163;293164;293165;293166;293167;293168;293169;293170;293171;293172	293165			10	
LVYHIGLTPAK	1	Unmodified	1210.7074	0.7073938	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	49.325	48.187	3	0.0029424	39516	160511_QHF_FH_JSI9i_3	44.847	27.411			1.0407	1.0343	5.2054	3	0	Plateau	1.4003	1.146	NaN	1	0	Median	0.9299	1.1059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0407	1.0343	NaN	1	0	Median	228600000	107150000	121450000	42886000	17272000	25614000	55421000	30368000	25053000	0	0	0	130290000	59508000	70783000	35248	5384	33360	217297;217298;217299	293173;293174	293173			1	
LVYILNR	0	Unmodified	889.53854	0.53853756	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.32	6.44		4	5				1	4	5	5	5	6	3	54.537	49.003	2	6.2097E-18	25997	160513_QHF_FH_JSI9Kac_6	174.15	64.273			1.3006	1.2761	42.204	16	8	Median	1.7445	1.4976	35.942	4	2	Median	2.1523	2.5411	41.662	4	2	Linear	1.0973	1.0827	51.24	5	4	Median	0.83194	0.92355	21.379	3	0	Median	3391600000	1587900000	1803700000	834430000	302230000	532200000	1184100000	640280000	543830000	1098700000	480830000	617840000	274430000	164610000	109820000	35249	2665	33361	217300;217301;217302;217303;217304;217305;217306;217307;217308;217309;217310;217311;217312;217313;217314;217315;217316;217317;217318	293175;293176;293177;293178;293179;293180;293181;293182;293183;293184;293185;293186;293187;293188;293189;293190;293191;293192;293193;293194	293190			20	
LVYIQLLWDNINLHQEPR	0	Unmodified	2263.2113	0.21133676	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.74	87.019	3	9.4164E-06	49828	160513_QHF_FH_JSI10Kac_6	87.49	79.536			0.84362	0.99639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84362	0.99639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88954000	46879000	42075000	0	0	0	88954000	46879000	42075000	0	0	0	0	0	0	35250	3000	33362	217319	293195	293195			1	
LVYLVENPGGYVAYSK	1	Unmodified	1770.9192	0.91923707	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.72	4	7	8					3	3	4	8	7	6	76.874	73.98	2;3	2.9853E-65	68280	160511_QHF_FH_JSI10i_1	275.95	233.62			0.9856	1.0101	32.036	24	9	Median	1.1834	0.99965	44.216	4	2	Median	0.74657	0.88866	40.514	8	2	Median	1.126	1.129	26.432	7	3	Median	0.91279	1.0186	12.831	5	2	Median	3105700000	1577200000	1528600000	321620000	141810000	179810000	1157900000	598020000	559920000	1004000000	460150000	543890000	622120000	377170000	244950000	35251	793	33363	217320;217321;217322;217323;217324;217325;217326;217327;217328;217329;217330;217331;217332;217333;217334;217335;217336;217337;217338;217339;217340;217341;217342;217343;217344	293196;293197;293198;293199;293200;293201;293202;293203;293204;293205;293206;293207;293208;293209;293210;293211;293212;293213;293214;293215;293216;293217;293218;293219;293220;293221;293222;293223;293224;293225;293226;293227;293228;293229;293230;293231;293232;293233;293234;293235;293236	293214			41	
LVYLYLMNYAK	1	Unmodified	1389.7366	0.73664502	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.69		4	4						6	2	4	4	4	92.422	88.363	2	1.1543E-35	41825	160513_QHF_FH_JSI12Kac_6	196.25	144.4			0.63719	0.69205	87.427	14	9	Median	1.2883	1.0801	10.951	2	0	Median	0.45531	0.5373	95.699	4	3	Median	0.32702	0.31781	124.81	4	3	Median	0.76368	0.79087	41.177	4	3	Median	10379000000	5127400000	5251800000	1913000000	824670000	1088300000	2678500000	1433400000	1245000000	4103300000	2255100000	1848300000	1684500000	614280000	1070200000	35252	2046;2296	33364	217345;217346;217347;217348;217349;217350;217351;217352;217353;217354;217355;217356;217357;217358	293237;293238;293239;293240;293241;293242;293243;293244;293245;293246;293247;293248;293249;293250;293251;293252;293253;293254	293251			18	
LVYLYLMNYAK	1	Oxidation (M)	1405.7316	0.73155964	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.34	71.057	2	2.4927E-15	37208	160513_QHF_FH_JSI12Kac_6	159.04	126.72			0.81554	0.81563	15.659	4	0	Median	1.2233	1.0636	NaN	1	0	Median	0.64558	0.7512	NaN	1	0	Median	0.82405	0.77698	NaN	1	0	Median	0.80712	0.85619	NaN	1	0	Median	786210000	408120000	378100000	254810000	104770000	150040000	193730000	119300000	74427000	161570000	91982000	69592000	176100000	92057000	84041000	35253	2046;2296	33364	217359;217360;217361;217362	293255;293256;293257;293258;293259;293260;293261;293262	293260		1712	8	
LVYPPGFMGLAASLYYPQQAIVFAQVSGER	0	Unmodified	3271.674	0.67399177	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	99.02	90.592	3;4	2.3946E-48	51701	160513_QHF_FH_JSI9Kac_6	147.17	139.68			0.94864	1.0575	14.239	4	1	Median	1.3894	1.1657	NaN	1	0	Median	0.86999	1.0316	NaN	1	0	Median	0.88785	0.83684	NaN	1	1	Median	1.0136	1.0841	NaN	1	0	Median	648870000	350520000	298350000	206020000	87453000	118560000	205120000	122280000	82844000	152190000	101180000	51016000	85541000	39610000	45931000	35254	4451	33365	217363;217364;217365;217366	293263;293264;293265	293264			3	
LVYQNIFTAMQAMIR	0	Unmodified	1797.927	0.92698176	1330;1697	P29992;O95837;P50148	GNA11;GNA14;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	97.005	88.727	2;3	3.8908E-63	50199	160513_QHF_FH_JSI9Kac_6	215.46	172.91			1.0011	0.99265	14.072	7	0	Median	1.3415	1.146	21.46	2	0	Median	0.85743	1.0034	1.5301	2	0	Median	1.0011	0.9642	NaN	1	0	Median	0.90895	0.96234	18.719	2	0	Median	852850000	389880000	462970000	194360000	87023000	107340000	319740000	150100000	169650000	83825000	37146000	46679000	254920000	115610000	139310000	35255	1330;1697	33366	217367;217368;217369;217370;217371;217372;217373	293266;293267;293268;293269;293270;293271;293272	293267			7	
LVYVFSQDFTVFGGSLSGAHAQK	1	Unmodified	2457.2329	0.23286007	830	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.876	82.157	3	1.6633E-05	46363	160513_QHF_FH_JSI10Kac_6	106.63	91.862			0.68887	0.80697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68887	0.80697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69020000	43935000	25085000	0	0	0	69020000	43935000	25085000	0	0	0	0	0	0	35256	830	33367	217374	293273	293273			1	
LVYVHTNGPK	1	Unmodified	1126.6135	0.61349341	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	13.4	5.2			1						4	1		1	3	25.597	18.775	3	0.00046601	15114	160511_QHF_FH_JSI12i_3	74.6	64.229			1.2482	1.3993	78.174	5	4	Median	2.9912	2.4593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8736	0.87836	NaN	1	0	Median	1.2482	1.3993	97.792	3	3	Median	77558000	21640000	55919000	6622700	2255200	4367500	0	0	0	7207300	3374900	3832400	63728000	16010000	47719000	35257	3221	33368	217375;217376;217377;217378;217379	293274;293275;293276;293277;293278	293276			5	
LVYVYLVR	0	Unmodified	1023.6117	0.6117025	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	74.25	65.562	2	0.00076073	36163	160513_QHF_FH_JSI10Kac_6	106.29	76.713			0.9219	0.86615	6.1616	4	0	Linear	1.1774	1.0307	NaN	1	0	Median	0.76497	0.90314	NaN	1	0	Median	0.94699	0.90617	NaN	1	0	Median	0.89748	0.95196	NaN	1	0	Median	1971500000	1080700000	890810000	332410000	178580000	153830000	828200000	458210000	369990000	477620000	263730000	213900000	333240000	180140000	153100000	35258	107	33369	217380;217381;217382;217383	293279;293280;293281;293282	293282			4	
LWACNFCYQR	0	Unmodified	1416.6067	0.60671025	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			63.643	55.383	2	0.0041456	30481	160513_QHF_FH_JSI10Kac_6	65.038	57.392			0.90613	1.0987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90613	1.0987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20968000	10554000	10413000	0	0	0	20968000	10554000	10413000	0	0	0	0	0	0	35259	2674	33370	217384	293283;293284	293284			2	
LWAEDSTEK	1	Unmodified	1077.4979	0.49785453	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	23.425	22.918	2	0.0017105	20168	160511_QHF_FH_JSI12i_1	76.679	53.25			0.52367	0.51198	85.575	4	4	Median	0.49559	0.40058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1158	1.0942	119.97	2	2	Median	0.55333	0.55957	NaN	1	1	Median	416190000	215000000	201190000	49357000	28052000	21306000	0	0	0	235790000	105270000	130520000	131040000	81681000	49364000	35260	227	33371	217385;217386;217387;217388	293285;293286;293287;293288	293287			4	
LWAHLIEK	1	Unmodified	1008.5757	0.57565135	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			46.512	44.902	3	0.026453	37481	160511_QHF_FH_JSI10i_3	28.013	18.425			1.3484	1.1287	NaN	1	0	Median	1.3484	1.1287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14727000	7255500	7471800	14727000	7255500	7471800	0	0	0	0	0	0	0	0	0	35261	1200	33372	217389;217390	293289;293290	293289			2	
LWAHVYAGAPVSSPEYTK	1	Unmodified	1974.984	0.98396259	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			6						9	4	4	4	3	61.875	56.542	2;3	1.028E-23	30939	160513_QHF_FH_JSI10Kac_6	185.59	172.83			1.083	0.93746	16.607	13	5	Linear	1.197	0.99886	7.7388	2	0	Median	0.97352	1.1676	4.0787	4	1	Linear	1.1688	1.1455	26.583	4	2	Median	1.083	1.0865	16.569	3	2	Median	5615800000	2709800000	2906000000	500820000	238290000	262530000	676680000	332850000	343830000	1232200000	642590000	589600000	3206100000	1496100000	1710000000	35262	1936	33373	217391;217392;217393;217394;217395;217396;217397;217398;217399;217400;217401;217402;217403;217404;217405	293291;293292;293293;293294;293295;293296;293297;293298;293299;293300;293301;293302;293303;293304;293305;293306;293307;293308;293309;293310;293311;293312;293313;293314;293315	293315			25	
LWAPDSPNR	0	Unmodified	1054.5196	0.51959303	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	31.991	31.262	2	0.00011447	26377	160511_QHF_FH_JSI12i_3	92.47	75.231			1.113	1.2167	11.213	7	2	Median	1.4294	1.2195	NaN	1	0	Median	1.1124	1.3842	NaN	1	0	Median	1.3509	1.3284	18.649	2	0	Median	1.0846	1.0856	6.226	3	2	Plateau	1047100000	495500000	551640000	112060000	45693000	66364000	168810000	91328000	77486000	443650000	199190000	244460000	322620000	159290000	163330000	35263	5495	33374	217406;217407;217408;217409;217410;217411;217412	293316;293317;293318;293319;293320;293321;293322;293323;293324;293325	293324			9	
LWAVAASYGQGGYLYR	0	Unmodified	1773.8839	0.88385462	4501	Q9BWH6	RPAP1	RNA polymerase II-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		78.934	71.575	2	3.689E-42	39723	160513_QHF_FH_JSI10Kac_6	220.94	182.64			1.0438	1.1071	24.605	4	3	Median	1.9574	1.6978	NaN	1	1	Median	0.90249	1.0495	11.631	2	2	Median	1.1166	1.0756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160150000	71016000	89136000	27764000	7681100	20083000	101770000	52768000	49004000	30616000	10566000	20050000	0	0	0	35264	4501	33375	217413;217414;217415;217416	293326;293327;293328;293329;293330	293330			5	
LWCAVGVNLSGGK	1	Unmodified	1359.6969	0.69690547	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	64.589	64.298	2	0.00036472	55390	160511_QHF_FH_JSI12i_3	96.342	74.835			1.3914	1.3979	115.43	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3914	1.3979	115.43	2	2	Median	60525000	26740000	33785000	0	0	0	0	0	0	0	0	0	60525000	26740000	33785000	35265	404	33376	217417;217418	293331;293332	293331			2	
LWCTYHEK	1	Unmodified	1135.5121	0.51206481	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	20.853	20.607	2;3	0.0026376	16663	160511_QHF_FH_JSI12i_3	54.416	45.202			1.3142	1.4538	33.73	5	0	Median	NaN	NaN	NaN	0	0	Median	1.3142	1.517	NaN	1	0	Median	0.86876	0.81975	0.044047	2	0	Median	1.4653	1.5129	5.6276	2	0	Median	971210000	403800000	567410000	0	0	0	58727000	23242000	35485000	412570000	186650000	225920000	499910000	193910000	306000000	35266	1067	33377	217419;217420;217421;217422;217423	293333;293334;293335;293336;293337	293337			5	
LWCTYHEKGLVK	2	Acetyl (K)	1574.7915	0.79153413	1067	P15121	AKR1B1	Aldose reductase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.752	48.03	3	0.00050058	25994	160513_QHF_FH_JSI11Kac_6	72.265	52.941			0.27355	0.26653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27355	0.26653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32376000	25204000	7171200	0	0	0	0	0	0	32376000	25204000	7171200	0	0	0	35267	1067	33378	217424	293338;293339	293338	901		2	
LWDFQGFECIR	0	Unmodified	1469.6762	0.67617003	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.575	88.848	2	0.016503	78162	160511_QHF_FH_JSI11i_2	62.463	51.366			0.83069	0.85542	13.759	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79126	0.77611	NaN	1	0	Median	0.8721	0.94282	NaN	1	0	Median	74119000	42940000	31179000	0	0	0	0	0	0	41627000	24711000	16916000	32492000	18229000	14263000	35268	1553	33379	217425;217426	293340	293340			0	
LWDGVSNR	0	Unmodified	945.46683	0.46682918	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	27.151	26.296	2	0.020893	22008	160511_QHF_FH_JSI12i_2	45.394	12.611			1.1863	1.155	5.0988	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93133	1.155	NaN	1	0	Median	1.1892	1.2047	NaN	1	0	Median	0.96333	1.0884	NaN	1	0	Median	238530000	110500000	128030000	0	0	0	59906000	30300000	29606000	110280000	48766000	61512000	68342000	31434000	36909000	35269	2226	33380	217427;217428;217429	293341;293342	293341			2	
LWDHATMTEVK	1	Unmodified	1329.6387	0.63872189	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	2	2	5	3	38.805	35.737	2;3	0.00010037	31533	160511_QHF_FH_JSI10i_2	87.149	71.268			1.1167	1.106	39.218	9	3	Median	1.1531	1.0055	13.482	2	1	Median	1.1084	1.3193	33.64	2	1	Median	1.1516	1.1398	62.787	3	1	Median	1.0091	1.1155	12.468	2	0	Median	652680000	285200000	367470000	117830000	57260000	60574000	147600000	69236000	78360000	282430000	119630000	162800000	104820000	39079000	65738000	35270	5595	33381	217430;217431;217432;217433;217434;217435;217436;217437;217438;217439;217440;217441	293343;293344;293345;293346;293347;293348;293349;293350;293351;293352;293353;293354;293355;293356;293357;293358;293359	293356			17	
LWDLENGK	1	Unmodified	973.4869	0.48689592	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		44.166	43.412	2	0.0076141	37138	160511_QHF_FH_JSI11i_2	65.252	34.534			0.83458	1.008	24.051	6	2	Plateau	0.78429	0.6502	17.782	2	1	Median	0.66085	0.79324	31.464	2	1	Median	0.96957	0.96324	6.4218	2	0	Median	NaN	NaN	NaN	0	0	Median	685390000	332630000	352760000	135190000	60530000	74657000	222160000	128810000	93349000	328040000	143290000	184750000	0	0	0	35271	4605	33382	217442;217443;217444;217445;217446;217447	293360;293361;293362;293363;293364;293365	293362			6	
LWDLQQLRK	1	Unmodified	1198.6822	0.68224168	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		55.002	53.962	3	0.00013839	45258	160511_QHF_FH_JSI10i_3	87.476	53.601			0.99617	0.80504	20.187	3	2	Plateau	0.99617	0.80504	NaN	1	0	Median	0.48688	0.54075	NaN	1	1	Median	0.74206	0.69994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165010000	87224000	77790000	59530000	30189000	29341000	39753000	25181000	14572000	65731000	31854000	33877000	0	0	0	35272	2099	33383	217448;217449;217450	293366;293367;293368	293367			3	
LWDLTTGTTTR	0	Unmodified	1263.6459	0.64591575	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.59	3	4	3				2	4	3	4	5	6	4	58.248	52.886	2	7.4301E-18	46944	160511_QHF_FH_JSI10i_2	155.84	138.6			1.0073	1.0328	21.806	19	2	Median	1.2589	1.028	11.133	4	0	Median	0.89554	1.0688	35.555	5	0	Median	1.047	1.0408	11.726	6	0	Median	0.90541	0.99266	14.496	4	2	Median	11658000000	5813900000	5844300000	2103600000	963880000	1139700000	3383300000	1677300000	1706000000	3780400000	2072900000	1707500000	2390900000	1099800000	1291100000	35273	2061	33384	217451;217452;217453;217454;217455;217456;217457;217458;217459;217460;217461;217462;217463;217464;217465;217466;217467;217468;217469	293369;293370;293371;293372;293373;293374;293375;293376;293377;293378;293379;293380;293381;293382;293383;293384;293385;293386;293387;293388;293389;293390;293391;293392;293393	293391			25	
LWDLTTGTTTRR	0	Unmodified	1419.747	0.74702678	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			11.3	6.6		1							2	1	2			48.717	42.449	3	0.019903	37573	160511_QHF_FH_JSI10i_2	24.5	10.536			0.38293	1.5033	72.608	3	1	Plateau	1.7367	1.5033	NaN	1	0	Median	0.76022	0.89799	93.669	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145230000	104220000	41006000	10661000	4148200	6513100	134570000	100080000	34493000	0	0	0	0	0	0	35274	2061	33385	217470;217471;217472	293394;293395	293394			2	
LWEEQLAAAK	1	Unmodified	1157.6081	0.60807369	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	3.85		4	3				1			2	2	2	2	49.443	47.225	2	0.00017476	40648	160511_QHF_FH_JSI11i_2	94.309	60.306			1.0847	1.0035	30.763	8	3	Median	1.2161	1.0035	0.57351	2	0	Median	0.71952	0.85027	18.33	2	1	Median	1.1319	1.1129	70.491	2	2	Median	1.0847	1.1802	8.9361	2	0	Median	3759300000	1827300000	1932000000	805570000	330910000	474650000	790690000	448880000	341820000	1013300000	520620000	492700000	1149700000	526880000	622820000	35275	1050	33386	217473;217474;217475;217476;217477;217478;217479;217480	293396;293397;293398;293399;293400;293401;293402;293403;293404;293405;293406	293402			11	
LWEMDNMLIQIK	1	Unmodified	1532.7731	0.77310688	5693	Q9Y605;Q96HT8	MRFAP1;MRFAP1L1	MORF4 family-associated protein 1;MORF4 family-associated protein 1-like 1	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		99.412	99.312	2	0.0017857	87060	160511_QHF_FH_JSI11i_2	62.005	47.314			0.4247	0.51841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4247	0.51841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8544100	5310700	3233400	0	0	0	8544100	5310700	3233400	0	0	0	0	0	0	35276	5693	33387	217481;217482	293407;293408	293407			2	
LWEPLVEEPPADQWK	1	Unmodified	1835.9094	0.90940066	2756	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	4	5	2	86.274	85.7	2;3	1.3304E-26	75262	160511_QHF_FH_JSI11i_2	231.92	212.79			0.83164	0.91917	21.63	12	5	Median	1.088	0.93586	9.519	2	0	Median	0.72716	0.88453	20.499	4	2	Median	0.80295	0.80223	32.511	4	3	Median	0.84203	0.91917	2.5875	2	0	Median	296270000	158800000	137470000	39539000	20156000	19383000	86489000	50313000	36176000	116690000	60928000	55760000	53551000	27405000	26146000	35277	2756	33388	217483;217484;217485;217486;217487;217488;217489;217490;217491;217492;217493;217494;217495	293409;293410;293411;293412;293413;293414;293415;293416;293417;293418;293419;293420;293421;293422;293423;293424;293425	293420			17	
LWEQLVHFHVMR	0	Oxidation (M)	1609.8188	0.81875194	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	1	4	71.416	62.47	3;4	0.00012649	32851	160513_QHF_FH_JSI12Kac_6	83.204	70.003			0.9912	0.93868	44.099	9	2	Median	1.5557	1.3182	19.497	2	0	Median	0.4636	0.54255	54.264	2	1	Median	0.9912	0.93868	NaN	1	0	Median	0.89395	0.94314	34.169	4	1	Median	588840000	326320000	262510000	83677000	38004000	45672000	231760000	144670000	87087000	52169000	27293000	24876000	221230000	116350000	104880000	35278	2901	33389	217496;217497;217498;217499;217500;217501;217502;217503;217504	293426;293427;293428;293429;293430;293431;293432;293433;293434;293435;293436	293431		2164	10	
LWEQLVHFHVMR	0	Unmodified	1593.8238	0.82383732	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	75.762	67.513	2;3;4	1.5971E-19	37130	160513_QHF_FH_JSI10Kac_6	148.18	122.06			1.1653	1.0296	27.528	9	0	Median	1.1424	0.96705	8.8597	2	0	Median	0.82376	0.97909	29.166	3	0	Median	1.5991	1.5088	44.498	2	0	Median	1.0552	1.1095	14.881	2	0	Median	4145900000	1820700000	2325200000	585980000	328950000	257040000	2527400000	1070500000	1456900000	578770000	185920000	392850000	453700000	235330000	218370000	35279	2901	33389	217505;217506;217507;217508;217509;217510;217511;217512;217513	293437;293438;293439;293440;293441;293442;293443;293444;293445;293446;293447;293448;293449;293450;293451;293452;293453;293454;293455;293456	293454			20	
LWEYLLELLR	0	Unmodified	1346.7598	0.7598233	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.783	89.363	2	0.00010749	48483	160513_QHF_FH_JSI12Kac_6	98.044	70.74			4.1207	3.7638	282.81	4	4	Median	2.9133	2.4778	NaN	1	1	Median	0.018191	0.021875	NaN	1	1	Median	5.8284	5.717	NaN	1	1	Median	10.749	11.39	NaN	1	1	Median	297530000	159090000	138440000	56472000	7698900	48773000	144800000	141380000	3412700	42459000	4803100	37656000	53802000	5205600	48597000	35280	2162	33390	217514;217515;217516;217517	293457;293458;293459;293460	293459			4	
LWFTLDHPPK	1	Unmodified	1252.6604	0.66044361	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	3	3	4	4	68.751	65.709	2;3	2.6971E-10	56819	160511_QHF_FH_JSI12i_3	120.09	96.714			1.1077	1.0967	22.113	14	3	Median	1.365	1.1761	7.9837	3	0	Median	0.88822	1.0849	11.48	3	0	Median	1.1268	1.0967	38.95	4	2	Median	1.0193	1.0635	21.558	4	1	Median	1186500000	536360000	650110000	126820000	51393000	75427000	216570000	107070000	109500000	290450000	142070000	148380000	552640000	235830000	316810000	35281	5309	33391	217518;217519;217520;217521;217522;217523;217524;217525;217526;217527;217528;217529;217530;217531	293461;293462;293463;293464;293465;293466;293467;293468;293469;293470;293471;293472;293473;293474;293475;293476;293477;293478;293479;293480;293481;293482;293483;293484;293485;293486;293487;293488;293489;293490;293491;293492	293486			32	
LWFTPTPHNDK	1	Unmodified	1354.667	0.66698555	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	47.925	47.413	2;3	0.00022893	41674	160511_QHF_FH_JSI11i_3	49.632	37.135			1.3841	1.4169	41.81	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4826	1.7654	NaN	1	0	Median	1.6294	1.5023	NaN	1	0	Median	0.93292	0.95468	47.555	2	0	Median	410820000	176270000	234550000	0	0	0	54951000	21962000	32989000	136480000	49356000	87128000	219380000	104950000	114430000	35282	3063	33392	217532;217533;217534;217535	293493;293494;293495;293496	293493			3	
LWFTYRK	1	Unmodified	1012.5494	0.54943659	5634	Q9Y4P1	ATG4B	Cysteine protease ATG4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			55.613	46.746	3	0.010082	25684	160513_QHF_FH_JSI10Kac_6	47.849	13.462			0.66537	0.67519	6.3551	2	1	Median	0.74205	0.64552	NaN	1	1	Median	0.59661	0.70622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44027000	17097000	26930000	9858900	4426200	5432700	34168000	12671000	21497000	0	0	0	0	0	0	35283	5634	33393	217536;217537	293497;293498	293498			2	
LWFYIQPAMR	0	Unmodified	1323.6798	0.67979884	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.927	89.927	2	0.0011266	80291	160511_QHF_FH_JSI11i_3	78.496	69.139			0.63255	0.59661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63255	0.59661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22213000	13915000	8298500	0	0	0	0	0	0	22213000	13915000	8298500	0	0	0	35284	4398	33394	217538	293499	293499			1	
LWFYIQPAMR	0	Oxidation (M)	1339.6747	0.67471346	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.537	73.291	2	0.00015162	39573	160513_QHF_FH_JSI9Kac_6	95.352	82.315			1.0327	1.0985	20.369	4	0	Median	1.7363	1.4971	NaN	1	0	Median	0.93672	1.0859	NaN	1	0	Median	1.1385	1.1112	NaN	1	0	Median	0.85501	0.91722	NaN	1	0	Median	481480000	252980000	228500000	107340000	46956000	60380000	191980000	125120000	66863000	92975000	33836000	59140000	89194000	47071000	42123000	35285	4398	33394	217539;217540;217541;217542	293500;293501;293502;293503;293504;293505	293501		2464	6	
LWGDRYFDPANGK	1	Unmodified	1537.7314	0.73137672	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							5	4	3	2	56.003	55.011	2;3	2.3411E-14	46147	160511_QHF_FH_JSI10i_3	157.38	134			1.1476	1.0799	22.684	13	3	Median	1.2288	0.97776	33.816	5	1	Median	1.0283	1.1764	22.227	3	0	Median	1.287	1.2207	11.76	3	2	Median	1.0697	1.0668	5.5151	2	0	Median	5749600000	2800200000	2949400000	1811900000	949540000	862400000	1043500000	512430000	531050000	2489500000	1123700000	1365800000	404700000	214490000	190210000	35286	1033	33395	217543;217544;217545;217546;217547;217548;217549;217550;217551;217552;217553;217554;217555;217556	293506;293507;293508;293509;293510;293511;293512;293513;293514;293515;293516;293517;293518;293519;293520;293521;293522;293523;293524;293525;293526;293527;293528;293529;293530;293531;293532;293533;293534;293535	293516			30	
LWGEPVNLR	0	Unmodified	1082.5873	0.58727866	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	56.071	55.502	2	0.015511	47667	160511_QHF_FH_JSI12i_3	44.117	31.91			0.80493	0.88965	11.583	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68085	0.81969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95162	0.96558	NaN	1	0	Median	199120000	105000000	94111000	0	0	0	90972000	53472000	37500000	0	0	0	108140000	51533000	56611000	35287	3921	33396	217557;217558	293536	293536			1	
LWGLEAQK	1	Unmodified	943.51272	0.51271674	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.723	45.773	2	0.011461	39378	160511_QHF_FH_JSI11i_2	54.157	34.595			1.0682	1.1501	9.216	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0651	1.0775	NaN	1	0	Median	1.0713	1.2275	NaN	1	1	Median	680360000	340400000	339960000	0	0	0	0	0	0	378410000	205350000	173060000	301950000	135050000	166900000	35288	5233	33397	217559;217560	293537;293538	293538			2	
LWGLTEMFPER	0	Unmodified	1377.6751	0.67510739	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	2	1	93.112	92.647	2	4.8244E-13	82551	160511_QHF_FH_JSI11i_3	147.2	136.83			1.118	1.13	13.479	5	1	Median	1.373	1.1414	1.4235	2	1	Median	1.0873	1.2418	NaN	1	0	Median	1.118	1.0303	NaN	1	0	Median	0.86444	0.87425	NaN	1	0	Median	1841200000	898290000	942860000	224250000	89506000	134740000	173700000	87076000	86623000	754050000	396260000	357790000	689150000	325450000	363700000	35289	4978	33398	217561;217562;217563;217564;217565;217566;217567	293539;293540;293541;293542;293543;293544;293545;293546;293547;293548	293539			10	
LWGTQDVSQDIQEMK	1	Unmodified	1776.8352	0.83524944	987	P11169;Q8TDB8	SLC2A3;SLC2A14	Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	72.484	71.786	2	4.2235E-53	65345	160511_QHF_FH_JSI11i_1	225.13	206.38			1.1236	1.1205	24.4	8	1	Median	1.1395	0.95102	1.7832	2	0	Median	0.92201	1.0917	6.3762	2	1	Median	1.1606	1.1439	5.5311	2	0	Median	1.4213	1.5283	41.298	2	0	Median	953360000	463010000	490360000	196000000	88080000	107920000	281310000	144760000	136550000	311930000	153500000	158430000	164120000	76667000	87456000	35290	987	33399	217568;217569;217570;217571;217572;217573;217574;217575	293549;293550;293551;293552;293553;293554;293555;293556;293557;293558;293559;293560;293561	293550			12	
LWGTQDVSQDIQEMKDESAR	1	Unmodified	2335.075	0.075038797	987	P11169;Q8TDB8	SLC2A3;SLC2A14	Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	75.128	74.786	3	3.1466E-09	66659	160511_QHF_FH_JSI11i_3	109.37	101.18			1.2027	1.0392	38.724	5	4	Median	1.22	1.0392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0027	0.96762	43.727	3	3	Plateau	1.2457	1.248	NaN	1	1	Median	539030000	262890000	276130000	60251000	23192000	37059000	0	0	0	373520000	190200000	183320000	105260000	49502000	55756000	35291	987	33400	217576;217577;217578;217579;217580;217581;217582	293562;293563;293564;293565;293566;293567;293568;293569;293570;293571	293563			10	
LWGVCVSILALLPR	0	Unmodified	1595.9222	0.92215438	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	47.993	47.011	3	0.054236	41393	160511_QHF_FH_JSI10i_2	18.731	11.007			0.79382	0.87204	14.042	4	0	Median	1.1622	0.98913	NaN	1	0	Median	0.80557	0.98042	NaN	1	0	Median	0.78225	0.77563	NaN	1	0	Median	0.66607	0.76894	NaN	1	0	Median	625180000	304510000	320670000	138680000	60383000	78298000	139300000	76662000	62641000	212590000	92125000	120470000	134610000	75339000	59267000	35292	5106	33401	217583;217584;217585;217586	293572	293572			1	
LWGVIDVK	1	Unmodified	928.5382	0.53820321	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.83	6.84		3						1	2	2	1	1	2	70.406	65.012	2	0.0053665	35033	160513_QHF_FH_JSI11Kac_6	77.923	51.814			1.1114	1.1132	32.844	6	0	Median	1.8148	1.5264	62.442	2	0	Median	0.92835	1.1474	NaN	1	0	Median	1.1047	1.08	NaN	1	0	Median	1.0185	1.1059	10.916	2	0	Median	549740000	296320000	253420000	120040000	68500000	51537000	182560000	98955000	83604000	40197000	20242000	19956000	206940000	108620000	98323000	35293	5296	33402	217587;217588;217589;217590;217591;217592	293573;293574;293575;293576;293577	293573			5	
LWGVIDVKR	1	Unmodified	1084.6393	0.63931423	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.809	52.227	3	0.010723	42834	160511_QHF_FH_JSI9i_3	44.318	25.223			0.77772	0.65257	NaN	1	1	Median	0.77772	0.65257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15436000	6624900	8810600	15436000	6624900	8810600	0	0	0	0	0	0	0	0	0	35294	5296	33403	217593	293578	293578			1	
LWHLVGR	0	Unmodified	879.50791	0.50790613	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			45.93	37.319	3	0.00668	20517	160513_QHF_FH_JSI10Kac_6	55.441	41.862			0.90508	1.0756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90508	1.0756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8059500	3216000	4843500	0	0	0	8059500	3216000	4843500	0	0	0	0	0	0	35295	4878	33404	217594;217595	293579;293580	293580			2	
LWHQLTLQVLDFVQDPCFAQGDGLIK	1	Unmodified	3040.5481	0.54806297	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.373	90.652	3	1.7426E-34	52520	160513_QHF_FH_JSI10Kac_6	152.5	141.19			0.88488	1.0645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88488	1.0645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148850000	89350000	59499000	0	0	0	148850000	89350000	59499000	0	0	0	0	0	0	35296	5441	33405	217596	293581	293581			1	
LWIANYSLPR	0	Unmodified	1231.6713	0.67134264	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	3	3	77.608	72.493	2	1.3212E-09	36973	160513_QHF_FH_JSI12Kac_6	133.23	112.33			0.95989	0.95138	10.329	9	5	Median	1.2084	1.0134	8.9337	2	1	Median	0.83848	0.98725	14.764	2	0	Median	0.9832	0.94209	4.8762	2	1	Median	0.83313	0.83971	15.212	3	3	Plateau	1192100000	589540000	602530000	225580000	93664000	131920000	315280000	176110000	139180000	304920000	141090000	163830000	346290000	178680000	167610000	35297	308	33406	217597;217598;217599;217600;217601;217602;217603;217604;217605;217606	293582;293583;293584;293585;293586;293587;293588;293589;293590;293591;293592;293593;293594;293595	293592			14	
LWIEQYGNVEIINHK	1	Unmodified	1854.9628	0.96283322	4528	Q9BXW6	OSBPL1A	Oxysterol-binding protein-related protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.051	70.801	3	1.8388E-06	38729	160513_QHF_FH_JSI10Kac_6	80.411	69.796			0.89594	1.0679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89594	1.0679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97957000	51307000	46650000	0	0	0	97957000	51307000	46650000	0	0	0	0	0	0	35298	4528	33407	217607	293596	293596			1	
LWISNGGLADIFTVFAK	1	Unmodified	1850.9931	0.99307071	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.38		1	5						10	4	5	4	3	100.46	95.054	2;3	4.4709E-99	89716	160511_QHF_FH_JSI12i_3	267.17	250.23			1.0905	1.0284	19.181	16	4	Median	1.4572	1.2609	18.424	4	0	Median	0.82177	0.98278	17.441	5	2	Median	1.0905	1.0284	9.5469	4	2	Median	0.90935	0.94451	20.374	3	0	Plateau	2723300000	1368400000	1354800000	490520000	192140000	298380000	564450000	318230000	246220000	1005000000	512790000	492220000	663310000	345280000	318030000	35299	1675	33408	217608;217609;217610;217611;217612;217613;217614;217615;217616;217617;217618;217619;217620;217621;217622;217623	293597;293598;293599;293600;293601;293602;293603;293604;293605;293606;293607;293608;293609;293610;293611;293612;293613;293614;293615;293616;293617;293618;293619;293620	293612			24	
LWISVAR	0	Unmodified	843.49667	0.49667274	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	63.05	53.737	2	0.021021	29590	160513_QHF_FH_JSI10Kac_6	69.432	0			1.0506	1.1868	10.434	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0506	1.2527	NaN	1	0	Median	1.0791	1.024	NaN	1	0	Median	1.1245	1.1868	NaN	1	0	Median	1165500000	555870000	609630000	0	0	0	717990000	335580000	382410000	319460000	160380000	159080000	128040000	59909000	68133000	35300	2609	33409	217624;217625;217626	293621;293622;293623	293623			3	
LWIYIDNILHSR	0	Unmodified	1541.8354	0.83544786	2499	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	2	1	87.596	79.488	2;3	4.1538E-21	43734	160513_QHF_FH_JSI9Kac_6	158.01	146.74			0.58333	0.53765	107.09	7	7	Median	0.94177	0.80681	181.47	2	2	Median	0.76962	0.88521	104.04	2	2	Median	1.2196	1.1598	108.72	2	2	Median	0.27802	0.29037	NaN	1	1	Median	596340000	338670000	257680000	93239000	55571000	37668000	370790000	214330000	156450000	97850000	41690000	56160000	34468000	27073000	7395600	35301	2499	33410	217627;217628;217629;217630;217631;217632;217633;217634	293624;293625;293626;293627;293628;293629;293630;293631	293627			8	
LWIYLHR	0	Unmodified	999.56542	0.56542101	3107	Q6P4R8	NFRKB	Nuclear factor related to kappa-B-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	66.29	57.178	3	0.00021386	31199	160513_QHF_FH_JSI10Kac_6	102.98	69.183			0.97226	1.0235	14.306	4	0	Median	1.3612	1.1833	NaN	1	0	Median	0.84742	1.0161	NaN	1	0	Median	1.1155	1.031	NaN	1	0	Median	0.79821	0.83577	NaN	1	0	Median	406610000	209670000	196940000	34893000	14308000	20585000	261770000	130560000	131220000	61033000	39993000	21040000	48909000	24809000	24101000	35302	3107	33411	217635;217636;217637;217638	293632;293633;293634;293635;293636;293637;293638;293639	293638			8	
LWIYSHHIYNK	1	Unmodified	1472.7565	0.75646926	1887	P57060	RWDD2B	RWD domain-containing protein 2B	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			53.674	45.09	4	0.024584	24877	160513_QHF_FH_JSI10Kac_6	32.254	18.575			1.0479	1.2362	4.5185	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0479	1.2362	4.5185	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34304000	13820000	20483000	0	0	0	34304000	13820000	20483000	0	0	0	0	0	0	35303	1887	33412	217639;217640	293640;293641	293640			0	
LWKEEEDGQWK	2	Unmodified	1446.6779	0.67794416	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.154	35.027	3	0.0052727	29625	160511_QHF_FH_JSI12i_3	50.354	41.841			0.58738	0.61348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58738	0.61348	NaN	1	1	Median	38068000	27534000	10534000	0	0	0	0	0	0	0	0	0	38068000	27534000	10534000	35304	1860	33413	217641	293642	293642			1	
LWLFGYDEQR	0	Unmodified	1325.6404	0.64043645	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.5	6.06		1							3	1	1	2		82.837	76.803	2	0.010179	40820	160513_QHF_FH_JSI11Kac_6	55.567	39.688			1.1109	1.0942	25.258	4	1	Median	1.1486	0.98432	NaN	1	0	Median	1.0744	1.2696	NaN	1	0	Median	0.96383	0.94271	36.05	2	1	Median	NaN	NaN	NaN	0	0	Median	153110000	68729000	84378000	51426000	25714000	25712000	44726000	18560000	26167000	56955000	24456000	32499000	0	0	0	35305	4987	33414	217642;217643;217644;217645	293643;293644;293645;293646;293647	293644			5	
LWLLDDSK	1	Unmodified	988.52295	0.52294707	1095	P16333	NCK1	Cytoplasmic protein NCK1	no	no	0	0	0	0		By MS/MS			2	0		1									1			69.206	68.398	2	0.013929	60672	160511_QHF_FH_JSI10i_2	51.864	37.088			0.71587	0.88105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71587	0.88105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23696000	12485000	11211000	0	0	0	23696000	12485000	11211000	0	0	0	0	0	0	35306	1095	33415	217646	293648;293649	293648			2	
LWMAAMK	1	Unmodified	849.4241	0.42410143	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	52.989	49.563	1;2	0.011089	41415	160511_QHF_FH_JSI10i_3	72.021	45.912			0.93651	1.0274	11.574	13	1	Median	1.3373	1.0542	15.096	3	0	Median	0.90143	1.0341	6.3799	3	0	Median	0.97268	0.95143	14.755	4	1	Median	0.885	0.92944	9.711	3	0	Plateau	6659000000	3081500000	3577600000	1282300000	571200000	711090000	1302000000	657330000	644650000	1613600000	750930000	862720000	2461100000	1102000000	1359100000	35307	2093	33416	217647;217648;217649;217650;217651;217652;217653;217654;217655;217656;217657;217658;217659	293650;293651;293652;293653;293654;293655;293656;293657;293658;293659;293660;293661;293662;293663;293664;293665;293666;293667;293668;293669;293670	293655			21	
LWMTSGHWQHYSENMFSFEVEK	1	Unmodified	2772.2101	0.21009249	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	82.744	75.171	3;4	1.1337E-48	42061	160513_QHF_FH_JSI10Kac_6	187.86	182.6			0.84306	0.81854	20.315	5	1	Median	1.1288	0.9598	22.514	2	1	Median	0.59157	0.70961	14.166	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84306	0.87848	NaN	1	0	Median	890060000	511680000	378380000	188290000	82452000	105840000	666130000	405710000	260420000	0	0	0	35637000	23516000	12121000	35308	1282	33417	217660;217661;217662;217663;217664	293671;293672;293673;293674;293675;293676;293677;293678	293677			8	
LWMWSWK	1	Unmodified	1035.5	0.50004356	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		86.523	77.2	2	0.04845	42873	160513_QHF_FH_JSI11Kac_6	62.717	47.942			0.30578	0.28614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30578	0.28614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	194500000	159150000	35357000	0	0	0	0	0	0	194500000	159150000	35357000	0	0	0	35309	4219	33418	217665	293679	293679			1	
LWNATKFALR	1	Acetyl (K)	1260.6979	0.69789175	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.323	69.009	2	0.04114	37713	160513_QHF_FH_JSI11Kac_6	51.488	29.402			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25748000	25748000	0	0	0	0	0	0	0	25748000	25748000	0	0	0	0	35310	1283	33419	217666	293680	293680			1	
LWNEVLASLK	1	Unmodified	1171.6601	0.66010926	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				19.505	18.303	3	0.054822	14691	160511_QHF_FH_JSI9i_3	12.576	0			1.8986	1.5195	NaN	1	0	Median	1.8986	1.5195	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58788000	15457000	43331000	58788000	15457000	43331000	0	0	0	0	0	0	0	0	0	35311	4259	33420	217667	293681	293681			1	
LWNIPDKK	2	Unmodified	1012.5706	0.57056597	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				37.923	36.45	2	0.028527	29682	160511_QHF_FH_JSI9i_3	42.109	24.073			0.38973	0.32099	NaN	1	0	Median	0.38973	0.32099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42097000	31296000	10802000	42097000	31296000	10802000	0	0	0	0	0	0	0	0	0	35312	2902	33421	217668	293682	293682			1	
LWNLHVMK	1	Unmodified	1039.5637	0.56370645	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	56.633	51.571	3	0.00017227	43795	160511_QHF_FH_JSI12i_3	98.997	90.134			0.92849	0.91608	22.734	8	0	Median	0.92502	0.7693	8.1552	2	0	Median	0.86063	1.0118	7.9281	2	0	Median	1.0305	0.97645	15.157	2	0	Median	1.0445	1.0624	44.99	2	0	Median	395970000	205210000	190760000	96832000	46799000	50034000	82127000	47287000	34840000	80945000	38729000	42215000	136060000	72392000	63669000	35313	2606	33422	217669;217670;217671;217672;217673;217674;217675;217676;217677	293683;293684;293685;293686;293687;293688;293689;293690;293691;293692;293693;293694;293695;293696;293697;293698;293699	293694			17	
LWNLLMPTK	1	Unmodified	1114.6209	0.62088698	3478	Q8IZ81	ELMOD2	ELMO domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	81.907	81.698	2	0.040479	70853	160511_QHF_FH_JSI12i_3	46.129	30.247			2.613	2.6587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.613	2.6587	NaN	1	1	Median	33712000	10810000	22901000	0	0	0	0	0	0	0	0	0	33712000	10810000	22901000	35314	3478	33423	217678	293700	293700			1	
LWNLNNYR	0	Unmodified	1091.5512	0.55122751	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			52.07	50.492	2	0.00010824	42165	160511_QHF_FH_JSI10i_3	128.82	115.61			1.0667	1.0303	9.5114	2	0	Median	1.1685	0.96333	NaN	1	0	Median	0.97376	1.102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214630000	99529000	115100000	106690000	43701000	62989000	107940000	55828000	52108000	0	0	0	0	0	0	35315	3101	33424	217679;217680	293701;293702	293701			2	
LWNMPENNGLHAR	0	Unmodified	1550.7412	0.7412299	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		44.018	44.018	2;3	0.0081515	37083	160511_QHF_FH_JSI10i_3	48.64	22.981			0.94132	0.88718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94132	0.88718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76376000	39607000	36769000	0	0	0	0	0	0	76376000	39607000	36769000	0	0	0	35316	5360	33425	217681;217682	293703;293704	293704			1	
LWNNVGHALENEK	1	Unmodified	1522.7528	0.75284044	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	3	2	40.373	39.883	2;3	6.4584E-05	34773	160511_QHF_FH_JSI11i_3	75.669	65.617			0.70668	0.70532	51.023	5	3	Median	NaN	NaN	NaN	0	0	Median	0.55726	0.64287	95.916	2	2	Median	0.70349	0.65891	33.998	2	1	Median	0.70668	0.70532	NaN	1	0	Median	342140000	208030000	134110000	0	0	0	79009000	42377000	36632000	175150000	104200000	70941000	87984000	61452000	26533000	35317	3195	33426	217683;217684;217685;217686;217687;217688;217689	293705;293706;293707;293708;293709;293710;293711;293712;293713;293714	293705			10	
LWNTLGVCK	1	Unmodified	1089.5641	0.56410038	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.39	3	4	4					1	4	3	4	4	5	53.07	49.522	2	1.3681E-05	43909	160511_QHF_FH_JSI10i_2	109.86	85.89			0.88493	0.98545	45.659	16	2	Median	1.1903	1.0083	11.065	3	0	Plateau	0.86597	1.0496	78.831	4	0	Median	0.76781	0.74554	7.1854	4	1	Median	1.0741	1.1146	48.73	5	1	Median	7510400000	3452000000	4058400000	573430000	202970000	370460000	1427300000	676440000	750860000	2902400000	1606200000	1296200000	2607300000	966410000	1640900000	35318	2061	33427	217690;217691;217692;217693;217694;217695;217696;217697;217698;217699;217700;217701;217702;217703;217704;217705	293715;293716;293717;293718;293719;293720;293721;293722;293723;293724;293725;293726;293727;293728;293729;293730;293731;293732;293733;293734;293735;293736;293737;293738;293739;293740;293741	293736			27	
LWNTTEVAPALSVFNDTK	1	Unmodified	2005.0157	0.015656649	381	O43815	STRN	Striatin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.182	96.846	2	7.2336E-05	85663	160511_QHF_FH_JSI10i_2	77.912	69.607			1.0951	1.1411	15.486	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2987	1.2731	NaN	1	1	Median	0.92344	1.0227	NaN	1	0	Median	23215000	8876000	14339000	0	0	0	0	0	0	11320000	3399900	7920300	11895000	5476100	6418900	35319	381	33428	217706;217707;217708	293742;293743;293744	293744			3	
LWPLFVK	1	Unmodified	901.54256	0.5425603	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	86.179	85.569	2	0.0064056	74235	160511_QHF_FH_JSI12i_3	91.26	79.355			1.0662	0.96727	23.485	6	0	Median	1.1838	0.97146	NaN	1	0	Median	0.78726	0.93509	0.58466	2	0	Median	1.4641	1.3884	28.934	2	0	Median	0.96032	0.9631	NaN	1	0	Median	264490000	132560000	131930000	42614000	18913000	23700000	44706000	23503000	21202000	86271000	47408000	38863000	90902000	42738000	48165000	35320	2977	33429	217709;217710;217711;217712;217713;217714	293745;293746;293747;293748;293749;293750;293751;293752;293753;293754;293755;293756;293757;293758;293759;293760;293761	293760			17	
LWPLSFLGSK	1	Unmodified	1146.6437	0.64373091	4368	Q9BRB3	PIGQ	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			101.35	101.19	2	0.0019041	83815	160511_QHF_FH_JSI10i_3	63.076	37.249			0.53192	0.51408	28.013	2	0	Median	0.50626	0.4217	NaN	1	0	Median	0.55887	0.62669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35551000	24058000	11493000	12830000	7871000	4958800	22721000	16187000	6534400	0	0	0	0	0	0	35321	4368	33430	217715;217716	293762;293763	293762			2	
LWPMQAR	0	Unmodified	900.46399	0.46399241	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	46.903	45.977	2	0.019234	37717	160511_QHF_FH_JSI9i_3	58.661	37.114			1.1932	1.1078	27.781	2	0	Median	1.6725	1.3483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85122	0.91024	NaN	1	0	Median	166250000	72550000	93698000	91898000	34763000	57134000	0	0	0	0	0	0	74350000	37787000	36563000	35322	3922	33431	217717;217718	293764	293764			1	
LWPSGDR	0	Unmodified	829.40825	0.40825167	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	4.15	1	4	4						1	3	2	3	2	26.222	25.507	2	0.0077995	21386	160511_QHF_FH_JSI12i_2	86.086	76.337			1.0468	1.0424	14.534	9	0	Median	1.338	1.0924	13.688	2	0	Median	0.75968	0.89563	21.466	2	0	Median	1.2212	1.1579	11.379	3	0	Median	0.97923	1.0624	14.63	2	0	Median	7918500000	3996600000	3921900000	931130000	379810000	551320000	1464600000	799300000	665300000	2479600000	1324700000	1154900000	3043200000	1492800000	1550400000	35323	1206	33432	217719;217720;217721;217722;217723;217724;217725;217726;217727;217728	293765;293766;293767;293768;293769;293770;293771;293772;293773;293774;293775;293776;293777	293768			13	
LWQTTEEIPK	1	Unmodified	1243.6449	0.64485312	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.864	47.183	2	0.0016541	42912	160511_QHF_FH_JSI12i_1	76.345	57.251			1.0987	1.1205	27.37	4	4	Linear	0.76696	0.62059	NaN	1	1	Median	0.78881	0.91666	NaN	1	1	Median	1.2308	1.2032	NaN	1	1	Median	0.92446	0.94143	NaN	1	1	Median	303160000	164310000	138850000	50077000	29150000	20928000	84158000	46137000	38021000	85880000	44550000	41330000	83048000	44476000	38573000	35324	4558	33433	217729;217730;217731;217732	293778;293779;293780;293781	293779			4	
LWQTVVGK	1	Unmodified	929.53345	0.53345218	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.66	1	3	5						6	2	4	5	4	42.929	38.848	2	0.0009497	33022	160511_QHF_FH_JSI12i_3	116.54	86.357			0.45643	0.45319	81.186	15	13	Median	0.59354	0.50591	65.645	2	1	Median	0.31579	0.36124	50.443	4	3	Median	0.45643	0.45319	91.579	5	5	Median	0.85431	0.90012	86.743	4	4	Median	2986000000	1641100000	1344900000	271510000	160200000	111310000	428230000	299830000	128400000	1363200000	736460000	626690000	923090000	444590000	478490000	35325	5595	33434	217733;217734;217735;217736;217737;217738;217739;217740;217741;217742;217743;217744;217745;217746;217747	293782;293783;293784;293785;293786;293787;293788;293789;293790;293791;293792;293793;293794;293795;293796	293792			15	
LWQYLLSR	0	Unmodified	1077.5971	0.59711507	3346	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	1		2	74.292	65.607	2	2.7706E-32	36260	160513_QHF_FH_JSI10Kac_6	190.08	106.28			0.76352	0.65497	70.298	5	4	Median	1.0541	0.89548	44.231	2	2	Median	0.9235	1.1054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.2772	0.29775	32.434	2	2	Median	484850000	240030000	244820000	104270000	46616000	57654000	312960000	143760000	169200000	0	0	0	67621000	49651000	17970000	35326	3346	33435	217748;217749;217750;217751;217752	293797;293798;293799;293800;293801;293802	293802			6	
LWSKAIFAGYK	2	Acetyl (K)	1324.718	0.71795849	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		81.499	72.185	2	4.0618E-07	39663	160513_QHF_FH_JSI11Kac_6	107.79	70.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95634000	95634000	0	0	0	0	0	0	0	95634000	95634000	0	0	0	0	35327	1135	33436	217753	293803	293803	987;989		1	
LWSLDSDEPVADIEGHTVR	0	Unmodified	2138.028	0.02801225	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	77.599	77.05	3	3.0188E-33	68774	160511_QHF_FH_JSI11i_3	192.62	166.73			0.99105	1.0323	11.149	7	2	Median	1.2466	1.0323	NaN	1	0	Median	0.97858	1.2155	NaN	1	0	Median	1.0898	1.051	15.536	2	0	Median	1.0646	1.0787	10.92	3	2	Plateau	583060000	281340000	301720000	34844000	17928000	16916000	60589000	27305000	33283000	178750000	87065000	91680000	308880000	149040000	159840000	35328	308	33437	217754;217755;217756;217757;217758;217759;217760	293804;293805;293806;293807;293808;293809;293810	293805			7	
LWSNFWGALSADGYYAR	0	Unmodified	1975.9217	0.92169668	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	91.601	83.34	2;3	2.0593E-55	44597	160513_QHF_FH_JSI12Kac_6	194.85	179.31			0.72929	1.1631	30.665	7	2	Linear	0.89191	0.77295	NaN	1	0	Median	0.91071	1.0778	10.767	2	0	Median	1.571	1.4579	15.423	2	1	Median	1.34	1.4136	42.823	2	1	Median	600570000	307500000	293070000	67790000	37133000	30656000	336670000	194080000	142590000	117210000	41692000	75513000	78904000	34597000	44306000	35329	2194	33438	217761;217762;217763;217764;217765;217766;217767	293811;293812;293813;293814;293815;293816;293817;293818;293819;293820	293816			10	
LWSNFWGALSPDEYYAR	0	Unmodified	2073.9585	0.95847612	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	91.939	83.611	2	1.5643E-16	46536	160513_QHF_FH_JSI9Kac_6	143.38	120.66			0.85547	0.87624	15.606	4	1	Median	1.3906	1.1787	NaN	1	0	Median	0.75467	0.87246	NaN	1	1	Median	0.89109	0.84208	NaN	1	0	Median	0.82128	0.88003	NaN	1	0	Median	171700000	93870000	77834000	32699000	13138000	19561000	81924000	48272000	33652000	29108000	16137000	12972000	27973000	16324000	11649000	35330	430	33439	217768;217769;217770;217771	293821;293822	293821			2	
LWSNFWGALSPDGYYAR	0	Unmodified	2001.9373	0.93734675	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	91.501	83.92	2	2.5987E-43	44577	160513_QHF_FH_JSI12Kac_6	227.63	207.24			1.0513	1.2003	11.471	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91613	1.1068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2064	1.3017	NaN	1	0	Median	336870000	179110000	157760000	0	0	0	273980000	147960000	126020000	0	0	0	62892000	31157000	31735000	35331	140	33440	217772;217773	293823;293824;293825;293826	293823			4	
LWSPDEEVSPEVLAK	1	Unmodified	1697.8512	0.85121708	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.096	74.605	2	3.1768E-05	67509	160511_QHF_FH_JSI10i_1	150.06	114.83			0.75257	0.78062	27.951	4	1	Median	0.65211	0.54043	NaN	1	0	Median	0.61316	0.72189	NaN	1	0	Median	0.86852	0.84413	NaN	1	1	Median	0.9976	1.0505	NaN	1	0	Median	513030000	274060000	238970000	119690000	66787000	52904000	108620000	56493000	52128000	144600000	80843000	63755000	140120000	69938000	70184000	35332	2789	33441	217774;217775;217776;217777	293827;293828;293829;293830	293829			4	
LWSSLQTHCCSQNK	1	Unmodified	1747.777	0.77702306	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			27.564	26.255	3	0.00047064	21692	160511_QHF_FH_JSI10i_3	72.417	65.836			1.0352	1.2089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0352	1.2089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25228000	14865000	10363000	0	0	0	25228000	14865000	10363000	0	0	0	0	0	0	35333	975	33442	217778;217779;217780	293831;293832;293833;293834	293832			4	
LWSSLTLLGSYK	1	Unmodified	1366.7497	0.74965254	639	O95059	RPP14	Ribonuclease P protein subunit p14	yes	yes	0	0	0	0	By MS/MS			By MS/MS	11.7	6.13			1						2	1			2	86.015	79.96	2	7.1975E-07	41681	160513_QHF_FH_JSI9Kac_6	127.42	91.48			1.0701	1.122	22.281	3	2	Plateau	1.2101	1.0171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87606	0.90699	30.089	2	1	Median	173980000	89030000	84949000	59332000	25522000	33810000	0	0	0	0	0	0	114650000	63508000	51139000	35334	639	33443	217781;217782;217783	293835;293836;293837	293835			3	
LWSTYLRPLLVVR	0	Unmodified	1614.961	0.96098272	5112	Q9NXS2	QPCTL	Glutaminyl-peptide cyclotransferase-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			84.361	77.242	3	1.3912E-05	43510	160513_QHF_FH_JSI10Kac_6	94.767	80.081			1.075	1.085	8.536	2	0	Median	1.3512	1.1525	NaN	1	0	Median	0.85522	1.0214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	511610000	291410000	220190000	90643000	46161000	44483000	420960000	245250000	175710000	0	0	0	0	0	0	35335	5112	33444	217784;217785	293838;293839	293839			2	
LWSVDHGEQSVVTAP	0	Unmodified	1623.7893	0.78928553	2703	Q15750	TAB1	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	60.705	59.791	2	0.00040966	51256	160511_QHF_FH_JSI12i_2	73.499	62.594			1.2034	1.2563	11.383	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1629	1.1592	NaN	1	0	Median	1.2452	1.3616	NaN	1	0	Median	52720000	25143000	27577000	0	0	0	0	0	0	31170000	15104000	16066000	21551000	10039000	11512000	35336	2703	33445	217786;217787	293840;293841;293842	293841			3	
LWSVHGQK	1	Unmodified	953.5083	0.50830006	523	O75419	CDC45	Cell division control protein 45 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		15.667	15.667	3	0.019764	12922	160511_QHF_FH_JSI11i_3	38.086	22.424			1.0632	0.98735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0632	0.98735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89001000	44985000	44016000	0	0	0	0	0	0	89001000	44985000	44016000	0	0	0	35337	523	33446	217788	293843	293843			1	
LWSVPDCNLLHTLR	0	Unmodified	1722.8876	0.88755978	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	83.164	82.678	3	0.0028663	69423	160511_QHF_FH_JSI10i_3	46.41	34.618			1.6159	1.6006	14.537	6	3	Median	2.3688	1.9701	NaN	1	1	Median	1.5894	1.7922	NaN	1	0	Median	1.513	1.4076	11.067	2	1	Median	1.5555	1.6001	7.1559	2	1	Median	227310000	93087000	134220000	12954000	1869600	11085000	40597000	21375000	19222000	98774000	35968000	62806000	74983000	33875000	41108000	35338	308	33447	217789;217790;217791;217792;217793;217794	293844;293845;293846;293847;293848;293849	293846			6	
LWTEIPTAITIK	1	Unmodified	1384.7966	0.79660274	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	87.308	86.657	2	0.00013341	74932	160511_QHF_FH_JSI12i_2	100.48	80.69			0.97988	1.0136	3.4543	4	0	Median	1.1922	0.99513	NaN	1	0	Median	0.79368	0.97097	NaN	1	0	Median	0.99065	1.0325	NaN	1	0	Median	0.96924	1.0475	NaN	1	0	Median	123700000	58770000	64926000	25224000	10848000	14375000	27286000	12245000	15041000	39766000	20075000	19691000	31421000	15602000	15819000	35339	2547	33448	217795;217796;217797;217798	293850;293851;293852;293853;293854	293850			5	
LWTETIYQSASVFK	1	Unmodified	1671.8508	0.85082315	3829	Q92503	SEC14L1	SEC14-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.349	75.107	2	8.809E-68	41143	160513_QHF_FH_JSI11Kac_6	227.2	199.87			1.1499	1.0752	24.174	4	0	Median	1.0489	0.89527	NaN	1	0	Median	0.69544	0.82951	NaN	1	0	Median	1.3437	1.2912	NaN	1	0	Median	1.2606	1.3188	NaN	1	0	Median	247030000	131760000	115270000	56092000	28128000	27964000	75241000	51079000	24162000	66380000	29078000	37302000	49319000	23478000	25842000	35340	3829	33449	217799;217800;217801;217802	293855;293856;293857;293858;293859;293860;293861;293862	293856			8	
LWTGGLDNTVR	0	Unmodified	1230.6357	0.63568542	2220	Q04726;Q04724;Q04727;Q04725	TLE3;TLE1;TLE4;TLE2	Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4;Transducin-like enhancer protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	51.678	50.55	2	0.028946	44527	160511_QHF_FH_JSI10i_2	40.058	19.111			0.77957	0.94194	10.832	3	1	Plateau	1.0292	0.87655	NaN	1	0	Median	0.77957	0.96815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69362	0.77976	NaN	1	1	Median	473220000	255280000	217930000	146670000	73382000	73283000	177150000	99337000	77815000	0	0	0	149400000	82564000	66835000	35341	2220	33450	217803;217804;217805	293863;293864	293864			2	
LWTLVSEQTR	0	Unmodified	1231.6561	0.65608651	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.49	1	5	4				2	4	4	4	6	5	5	62.588	56.32	2	1.4358E-07	47127	160511_QHF_FH_JSI10i_3	120.07	120.07			1.0852	1.1526	22.85	17	1	Median	1.3692	1.1564	20.701	4	1	Median	0.97375	1.1526	27.844	6	0	Median	1.0797	1.0281	21.248	3	0	Median	1.0464	1.0922	16.306	4	0	Median	15926000000	6194600000	9731300000	2334500000	1006300000	1328200000	4449600000	2093500000	2356200000	4634900000	1658100000	2976700000	4506900000	1436700000	3070100000	35342	1589	33451	217806;217807;217808;217809;217810;217811;217812;217813;217814;217815;217816;217817;217818;217819;217820;217821;217822;217823;217824;217825	293865;293866;293867;293868;293869;293870;293871;293872;293873;293874;293875;293876;293877;293878;293879;293880;293881;293882;293883;293884;293885;293886;293887;293888;293889;293890;293891;293892;293893;293894;293895;293896;293897;293898	293869			34	
LWTMHNAQDLQK	1	Unmodified	1483.7242	0.72418285	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.172	38.992	3	2.3299E-05	33224	160511_QHF_FH_JSI12i_3	80.312	66.348			0.76176	0.76507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76176	0.76507	NaN	1	0	Median	106400000	50499000	55900000	0	0	0	0	0	0	0	0	0	106400000	50499000	55900000	35343	1176	33452	217826	293899;293900	293900			2	
LWTPPEDYRL	0	Unmodified	1288.6452	0.64518747	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	72.757	71.792	2	8.0523E-05	63715	160511_QHF_FH_JSI10i_2	87.476	74.849			0.76993	0.93721	2.1184	3	1	Plateau	1.0966	0.91837	NaN	1	1	Median	0.76647	0.95389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82648	0.92082	NaN	1	0	Median	272680000	148490000	124190000	73785000	36661000	37124000	109300000	59761000	49538000	0	0	0	89598000	52068000	37530000	35344	4543	33453	217827;217828;217829	293901;293902;293903;293904	293904			4	
LWTSASDQQMTEFSNPSPSTSISAEGK	1	Unmodified	2885.3025	0.30253213	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.466	69.921	3	1.0907E-15	62126	160511_QHF_FH_JSI9i_1	98.967	91.774			1.0502	0.97515	7.9424	4	0	Median	1.1358	0.96892	NaN	1	0	Median	0.78838	0.92415	NaN	1	0	Median	1.0293	0.98141	NaN	1	0	Median	1.0716	1.1131	NaN	1	0	Median	151880000	85937000	65946000	36858000	17093000	19765000	40769000	28902000	11867000	38984000	22878000	16105000	35272000	17064000	18208000	35345	4425	33454	217830;217831;217832;217833	293905;293906;293907;293908;293909;293910;293911;293912;293913;293914	293914			10	
LWVGGLGPWVPLAALAR	0	Unmodified	1775.0246	0.024645614	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	98.184	89.756	2;3	2.4182E-32	51084	160513_QHF_FH_JSI9Kac_6	166.97	135.33			1.0291	1.0165	16.634	8	2	Median	1.2262	1.0428	29.038	2	0	Median	0.99246	1.1759	18.595	2	0	Median	1.0632	1.0043	1.974	2	1	Median	0.86945	0.92776	12.645	2	1	Median	1028800000	509980000	518840000	194600000	76901000	117700000	361820000	198090000	163730000	307900000	140130000	167770000	164500000	94864000	69635000	35346	4254	33455	217834;217835;217836;217837;217838;217839;217840;217841	293915;293916;293917;293918;293919;293920;293921;293922;293923	293917			9	
LWVGYQYVITGR	0	Unmodified	1453.7718	0.77178497	2138	P98153	DGCR2	Integral membrane protein DGCR2/IDD	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	80.373	72.115	2	3.7766E-08	40426	160513_QHF_FH_JSI10Kac_6	113.44	91.359			1.123	1.1335	22.631	4	0	Median	1.675	1.4331	NaN	1	0	Median	0.73008	0.83703	NaN	1	0	Median	1.2821	1.207	NaN	1	0	Median	0.98358	1.0644	NaN	1	0	Median	133720000	67485000	66232000	20754000	8226800	12527000	59978000	36016000	23962000	28857000	12499000	16358000	24128000	10742000	13385000	35347	2138	33456	217842;217843;217844;217845	293924;293925;293926	293925			3	
LWVPDEEVSPETMVK	1	Unmodified	1757.8546	0.8545879	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	79.823	79.526	2	8.2261E-05	72329	160511_QHF_FH_JSI11i_1	112.13	80.117			1.0177	1.0197	37.238	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1116	1.3147	58.925	2	2	Median	1.112	1.0676	NaN	1	0	Median	0.93134	0.97397	NaN	1	0	Median	222860000	99402000	123460000	0	0	0	137030000	55702000	81328000	47766000	23475000	24292000	38064000	20225000	17839000	35348	4988	33457	217846;217847;217848;217849;217850	293927;293928;293929;293930;293931;293932;293933;293934	293928			8	
LWWHYGISFLR	0	Unmodified	1476.7666	0.76664001	3597	Q8NBM8	PCYOX1L	Prenylcysteine oxidase-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	85.486	77.236	3	4.5586E-10	42227	160513_QHF_FH_JSI9Kac_6	124.67	100.58			0.89099	0.9019	24.591	4	0	Median	1.1562	0.98123	NaN	1	0	Median	0.68662	0.82898	NaN	1	0	Median	1.2458	1.1427	NaN	1	0	Median	0.59928	0.6437	NaN	1	0	Median	455970000	252270000	203700000	95735000	49578000	46157000	280770000	163090000	117680000	56166000	27242000	28924000	23298000	12356000	10942000	35349	3597	33458	217851;217852;217853;217854	293935;293936;293937;293938;293939	293937			5	
LWYHLHTFLEK	1	Unmodified	1485.7769	0.77687035	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	74.04	65.581	3;4	1.1316E-05	35642	160513_QHF_FH_JSI10Kac_6	94.465	81.329			0.70497	0.97176	17.245	5	0	Plateau	1.0239	0.86747	NaN	1	0	Median	0.75745	0.90627	9.8672	2	0	Median	1.1679	1.1204	NaN	1	0	Median	1.1771	1.2689	NaN	1	0	Median	325030000	155740000	169280000	41686000	16973000	24713000	228350000	110960000	117380000	29990000	18043000	11946000	25002000	9761000	15241000	35350	3643	33459	217855;217856;217857;217858;217859	293940;293941;293942;293943;293944	293941			5	
LWYNHIAYIPIQIGNLTNLER	0	Unmodified	2540.354	0.35397826	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		92.723	84.736	3	2.1256E-13	47247	160513_QHF_FH_JSI9Kac_6	113.51	100.84			1.1713	1.1634	8.8594	3	0	Plateau	1.1713	0.98802	NaN	1	0	Median	0.97274	1.1634	NaN	1	0	Median	1.2047	1.1376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	788180000	398350000	389830000	140850000	57996000	82856000	426470000	232060000	194410000	220850000	108290000	112560000	0	0	0	35351	3428	33460	217860;217861;217862	293945;293946;293947;293948	293947			4	
LWYTLDR	0	Unmodified	965.49707	0.49706667	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	58.492	54.402	2	0.0047315	47212	160511_QHF_FH_JSI11i_2	97.473	76.991			0.76948	0.87977	32.317	10	1	Median	0.91995	0.78888	19.488	2	1	Median	0.72712	0.87977	2.3409	2	0	Median	0.70021	0.71871	37.124	3	0	Median	0.8791	0.98932	52.552	3	0	Plateau	1961900000	1152700000	809220000	252190000	134860000	117330000	456430000	261950000	194480000	767810000	459750000	308070000	485460000	296120000	189340000	35352	764	33461	217863;217864;217865;217866;217867;217868;217869;217870;217871;217872	293949;293950;293951;293952;293953;293954;293955	293951			7	
LWYVLLK	1	Unmodified	933.56878	0.56877505	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.81		2	8						1	3	3	2	3	82.686	81.211	2	0.009206	72871	160511_QHF_FH_JSI11i_3	84.025	84.025			0.86928	0.87683	154.9	10	10	Median	1.3646	1.1068	244.73	2	2	Median	3.8673	4.4792	171.28	3	3	Median	0.73761	0.68927	206.54	2	2	Median	0.28726	0.28584	129.58	3	3	Median	1261000000	744150000	516840000	148260000	50629000	97627000	128840000	55621000	73217000	142010000	65804000	76207000	841890000	572100000	269790000	35353	4871	33462	217873;217874;217875;217876;217877;217878;217879;217880;217881;217882;217883	293956;293957;293958;293959;293960;293961;293962;293963;293964;293965;293966	293956			11	
LWYVMLEQFLMK	1	Unmodified	1599.8193	0.81932879	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.507	89.373	2	4.2878E-12	51411	160513_QHF_FH_JSI9Kac_6	123.88	101.41			0.46378	0.40505	NaN	1	0	Median	0.46378	0.40505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81584000	54526000	27058000	81584000	54526000	27058000	0	0	0	0	0	0	0	0	0	35354	1406	33463	217884	293967	293967			1	
LYAGSTVK	1	Unmodified	837.45962	0.45961853	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.59	3	3	2				2	1		1	3	4	3	16.268	13.52	2	0.0052958	11141	160511_QHF_FH_JSI11i_2	66.073	10.632			0.84146	0.91931	24.665	11	0	Median	1.8723	1.6117	NaN	1	0	Median	0.84146	1.01	7.7387	3	0	Median	0.8308	0.81137	28.039	4	0	Median	0.74372	0.8277	6.4676	3	0	Plateau	3442500000	1707800000	1734700000	350260000	159570000	190690000	754780000	340980000	413790000	1208400000	603450000	604910000	1129100000	603810000	525310000	35355	2778	33464	217885;217886;217887;217888;217889;217890;217891;217892;217893;217894;217895	293968;293969;293970;293971;293972;293973;293974;293975;293976;293977	293977			10	
LYAMNNI	0	Unmodified	837.40547	0.40547447	1937	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	54.176	53.476	1;2	0.010039	48267	160511_QHF_FH_JSI10i_1	76.553	64.169			0.98608	0.97639	11.985	7	1	Median	1.082	0.89679	12.026	2	0	Median	0.89984	1.0588	NaN	1	0	Median	0.97265	0.94185	13.438	2	1	Median	0.86124	0.88989	17.321	2	0	Median	1396000000	676690000	719350000	399790000	185400000	214390000	214520000	100900000	113620000	433100000	210720000	222380000	348640000	179670000	168970000	35356	1937	33465	217896;217897;217898;217899;217900;217901;217902	293978;293979;293980;293981;293982;293983;293984;293985;293986;293987	293985			10	
LYAMQTGMK	1	Unmodified	1041.4987	0.49872293	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	33.803	32.873	2	3.1093E-06	27858	160511_QHF_FH_JSI12i_2	124.08	49.744			1.0421	1.075	22.618	4	0	Median	1.0914	0.92893	NaN	1	0	Median	0.99498	1.2042	NaN	1	0	Median	0.94951	0.95967	NaN	1	0	Median	1.3663	1.5108	NaN	1	0	Median	430830000	233180000	197650000	84538000	47572000	36966000	73375000	37456000	35919000	172370000	102110000	70262000	100540000	46041000	54504000	35357	4888	33466	217903;217904;217905;217906	293988;293989;293990;293991;293992;293993;293994;293995	293989			8	
LYANMFER	0	Unmodified	1042.4906	0.49060109	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.829	1	1	2								2	1	1	48.547	47.859	2	0.0018874	40777	160511_QHF_FH_JSI12i_3	84.244	63.689			1.5022	1.3978	19.096	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0063	1.1738	25.852	2	0	Median	1.3301	1.3864	NaN	1	0	Median	1.4774	1.4843	NaN	1	0	Median	3095300000	803550000	2291800000	0	0	0	486290000	201300000	285000000	1015000000	287600000	727400000	1594000000	314660000	1279400000	35358	2193	33467	217907;217908;217909;217910	293996;293997;293998;293999	293999			4	
LYASHSQFIK	1	Unmodified	1192.6241	0.6240581	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	1	2	2	4	29.214	26.572	2;3	5.2511E-06	21819	160511_QHF_FH_JSI12i_3	107.24	65.704			0.90393	0.96775	55.873	8	4	Median	0.89953	0.76618	NaN	1	0	Median	0.75271	0.87181	25.796	2	0	Median	1.4705	1.4227	65.522	2	1	Median	1.6993	1.7306	76.234	3	3	Median	932990000	439960000	493030000	18717000	8221300	10496000	178940000	96299000	82639000	221700000	82713000	138980000	513640000	252730000	260910000	35359	4494	33468	217911;217912;217913;217914;217915;217916;217917;217918;217919	294000;294001;294002;294003;294004;294005;294006;294007;294008;294009;294010	294006			10	
LYASILQQK	1	Unmodified	1062.6073	0.6073454	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	1	4	2	51.277	47.633	2	0.0046155	41932	160511_QHF_FH_JSI11i_3	56.659	31.209			1.2652	1.279	51.015	9	3	Median	1.5841	1.3607	8.7607	2	0	Median	1.078	1.3072	NaN	1	0	Median	1.1047	1.0839	66.376	4	2	Median	1.4554	1.5509	3.1223	2	1	Median	486590000	216630000	269960000	69954000	30395000	39559000	50892000	25238000	25654000	187820000	89642000	98182000	177920000	71352000	106570000	35360	179	33469	217920;217921;217922;217923;217924;217925;217926;217927;217928	294011;294012;294013;294014;294015;294016;294017	294011			6	
LYASYEK	1	Unmodified	872.42798	0.42798405	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	19.094	18.483	2	0.014723	15028	160511_QHF_FH_JSI12i_2	65.777	32.039			0.72813	0.81338	21.945	6	0	Median	0.67098	0.56042	NaN	1	0	Median	0.73147	0.9137	NaN	1	0	Median	0.96232	0.95862	17.516	2	0	Median	0.70762	0.77846	0.48756	2	0	Median	2377900000	1320900000	1057000000	384760000	174320000	210440000	318380000	215120000	103260000	1002100000	527620000	474470000	672710000	403850000	268860000	35361	1242	33470	217929;217930;217931;217932;217933;217934	294018;294019;294020;294021;294022;294023	294018			6	
LYASYEKQGR	1	Acetyl (K)	1255.6197	0.619701	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			35.99	26.455	2	0.00043083	15538	160513_QHF_FH_JSI10Kac_4	93.551	65.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35362	1242	33471	217935	294024	294024	1138		1	
LYATMEKHK	2	Acetyl (K);Oxidation (M)	1177.5801	0.58014438	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.725							5	8	4	2	5	3	7	18.006	9.3263	2;3	3.1755E-05	6744	160513_QHF_FH_JSI12Kac_5	114.97	95.725			0.83896	0.88448	104.3	17	2	Median	1.0082	0.85656	0.69728	2	0	Median	0.73865	0.87972	27.955	5	0	Median	1.0108	0.96431	192.12	3	1	Median	0.94088	0.99791	115.54	7	1	Median	477010000	256890000	220120000	79141000	41498000	37644000	93222000	58211000	35011000	62161000	38133000	24028000	242480000	119040000	123440000	35363	2285;3886	33472	217936;217937;217938;217939;217940;217941;217942;217943;217944;217945;217946;217947;217948;217949;217950;217951;217952	294025;294026;294027;294028;294029;294030;294031;294032;294033;294034;294035;294036;294037;294038;294039;294040;294041;294042;294043;294044;294045;294046;294047;294048;294049	294039	2398	1882	25	
LYATMEKHK	2	Acetyl (K)	1161.5852	0.58522975	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.766							4	7	8	3	6	5	5	30.48	21.419	2;3	1.398E-06	11860	160513_QHF_FH_JSI9Kac_6	132.01	115.38			1.0013	1.0091	14.294	19	0	Median	1.0013	0.87105	9.0824	3	0	Median	0.72926	0.87258	9.8736	6	0	Median	1.0809	1.0299	5.3668	5	0	Median	1.1008	1.2034	9.9911	5	0	Median	2223500000	1127000000	1096500000	382090000	188040000	194050000	743840000	395560000	348290000	596280000	283820000	312460000	501250000	259550000	241700000	35364	2285;3886	33472	217953;217954;217955;217956;217957;217958;217959;217960;217961;217962;217963;217964;217965;217966;217967;217968;217969;217970;217971	294050;294051;294052;294053;294054;294055;294056;294057;294058;294059;294060;294061;294062;294063;294064;294065;294066;294067;294068;294069;294070;294071;294072;294073;294074;294075;294076;294077;294078;294079;294080;294081;294082;294083;294084;294085;294086	294075	2398		37	
LYAVFTDYEHDK	1	Unmodified	1499.6933	0.69325988	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.78		8						3	4	2	5	4	4	59.784	54.049	2;3	1.4665E-05	47395	160511_QHF_FH_JSI9i_2	96.745	87.208			1.0878	1.1169	23.346	13	5	Median	1.2539	1.07	20.577	2	1	Median	0.95451	1.1717	31.241	4	2	Median	1.3383	1.31	25.052	4	2	Median	0.93615	1.0449	17.257	3	0	Plateau	737190000	363790000	373400000	114500000	59370000	55126000	247470000	112690000	134780000	236320000	107220000	129100000	138900000	84512000	54391000	35365	3709	33473	217972;217973;217974;217975;217976;217977;217978;217979;217980;217981;217982;217983;217984;217985;217986	294087;294088;294089;294090;294091;294092;294093;294094;294095;294096;294097;294098;294099;294100	294091			14	
LYAVGDNPMSDVYGANLFHQYLQK	1	Unmodified	2742.3112	0.31118674	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	100.75	100.65	3	2.655E-76	86477	160511_QHF_FH_JSI12i_2	236.29	218.46			0.95188	0.85927	17.957	5	0	Median	0.95188	0.81577	NaN	1	0	Median	0.7095	0.85927	NaN	1	0	Median	0.84628	0.85688	NaN	1	0	Median	1.0997	1.167	3.2431	2	0	Median	905850000	450950000	454900000	88859000	43248000	45612000	142370000	74664000	67708000	265630000	138380000	127260000	408980000	194660000	214320000	35366	4529	33474	217987;217988;217989;217990;217991	294101;294102;294103;294104;294105	294102			5	
LYAVHQEGNK	1	Unmodified	1157.5829	0.58292157	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.54		8	8					6	8	7	8	8	7	12.508	8.5582	2;3	4.9187E-19	7791	160511_QHF_FH_JSI9i_2	176.6	122.4			0.96877	0.97604	17.6	29	4	Median	1.1634	0.98412	8.4185	7	0	Median	0.8533	1.0225	20.454	7	2	Median	0.95262	0.91203	13.669	8	2	Median	0.92534	1.0315	22.426	7	0	Median	14171000000	6676800000	7494600000	1636800000	750420000	886430000	2308800000	1152200000	1156500000	5511800000	2752800000	2758900000	4714100000	2021300000	2692800000	35367	1721	33475	217992;217993;217994;217995;217996;217997;217998;217999;218000;218001;218002;218003;218004;218005;218006;218007;218008;218009;218010;218011;218012;218013;218014;218015;218016;218017;218018;218019;218020;218021	294106;294107;294108;294109;294110;294111;294112;294113;294114;294115;294116;294117;294118;294119;294120;294121;294122;294123;294124;294125;294126;294127;294128;294129;294130;294131;294132;294133;294134;294135;294136;294137;294138;294139;294140;294141;294142;294143	294120			38	
LYAYEPADTALLLDNMK	1	Unmodified	1939.9601	0.96011561	747	O95994	AGR2	Anterior gradient protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								5	3	3	2	96.816	96.612	2;3	1.1861E-10	87377	160511_QHF_FH_JSI10i_1	171.57	159.21			1.0082	0.93931	14.543	11	6	Median	1.019	0.87071	15.315	5	4	Median	0.81899	1.0538	18.97	3	0	Median	0.93154	0.91285	9.3845	2	1	Median	1.0082	1.035	NaN	1	1	Median	284990000	144790000	140200000	81320000	41474000	39845000	119540000	60661000	58880000	53006000	27748000	25257000	31129000	14910000	16219000	35368	747	33476	218022;218023;218024;218025;218026;218027;218028;218029;218030;218031;218032;218033;218034	294144;294145;294146;294147;294148;294149;294150;294151;294152;294153;294154;294155;294156;294157;294158	294148			15	
LYAYEPADTALLLDNMKK	2	Unmodified	2068.0551	0.055078623	747	O95994	AGR2	Anterior gradient protein 2 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	86.592	85.928	3	8.0503E-05	74282	160511_QHF_FH_JSI12i_2	63.918	54.337			0.84685	1.0367	19.078	5	4	Median	NaN	NaN	NaN	0	0	Median	0.73449	0.89871	20.206	2	2	Median	0.87162	0.91869	27.921	2	2	Median	0.9868	1.0894	NaN	1	0	Median	169690000	83841000	85850000	0	0	0	64523000	33219000	31303000	77667000	37165000	40502000	27501000	13456000	14045000	35369	747	33477	218035;218036;218037;218038;218039	294159;294160;294161;294162;294163;294164	294160			6	
LYAYHLSR	0	Unmodified	1021.5345	0.53451481	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	4	4	2	3	32.47	26.775	2;3	0.00048062	15151	160513_QHF_FH_JSI10Kac_6	80.165	67.55			0.98683	1.0077	8.7296	12	0	Median	1.2626	1.0473	11.007	4	0	Median	0.85857	1.0178	10.786	4	0	Median	1.0652	1.0114	6.8346	2	0	Median	0.9137	0.97095	4.8664	2	0	Median	935650000	465170000	470480000	291850000	133380000	158470000	453810000	240220000	213580000	74336000	34472000	39864000	115660000	57103000	58561000	35370	5119	33478	218040;218041;218042;218043;218044;218045;218046;218047;218048;218049;218050;218051;218052	294165;294166;294167;294168;294169;294170;294171;294172;294173;294174;294175;294176;294177;294178;294179;294180	294178			16	
LYCIYVAIGQK	1	Unmodified	1326.7006	0.70059386	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	1	2	3	3	72.855	68.951	2	8.613E-27	36861	160513_QHF_FH_JSI11Kac_6	179.73	151.72			0.90505	1.0127	28.56	9	5	Median	0.90505	0.7593	NaN	1	0	Median	0.82504	1.0006	5.9837	2	1	Median	0.81902	0.77705	16.846	3	2	Median	1.2743	1.3009	16.394	3	2	Median	1057400000	595900000	461540000	181660000	106450000	75200000	477810000	293000000	184800000	197500000	101440000	96062000	200480000	95008000	105470000	35371	1263	33479	218053;218054;218055;218056;218057;218058;218059;218060;218061	294181;294182;294183;294184;294185;294186;294187;294188;294189;294190;294191;294192;294193	294184			13	
LYCYYYQVLQK	1	Unmodified	1539.7432	0.74318696	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	74.636	65.594	2	9.081E-27	35558	160513_QHF_FH_JSI11Kac_6	179.21	169.78			1.1062	1.0773	31.721	5	0	Median	1.4118	1.2052	NaN	1	0	Median	0.67009	0.79464	17.632	2	0	Median	1.1062	1.0773	NaN	1	0	Median	1.5577	1.6365	NaN	1	0	Median	180820000	94091000	86726000	21592000	9981400	11611000	66455000	45434000	21021000	45144000	19877000	25266000	47625000	18797000	28828000	35372	3272	33480	218062;218063;218064;218065;218066	294194;294195;294196;294197;294198;294199;294200;294201;294202	294194			9	
LYDAMIYVYNR	0	Unmodified	1419.6857	0.68567208	3520	Q8N3P4	VPS8	Vacuolar protein sorting-associated protein 8 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.131	68.76	2	0.0084914	37423	160513_QHF_FH_JSI10Kac_6	58.246	44.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35373	3520	33481	218067	294203	294203			1	
LYDAYELK	1	Unmodified	1013.507	0.50696266	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	3	2	43.685	41.038	2	0.00053249	35189	160511_QHF_FH_JSI11i_2	105.14	41.571			1.0319	1.0223	14.738	11	2	Median	1.0457	0.87372	19.704	3	1	Plateau	0.85336	1.0223	16.409	3	0	Median	0.99483	0.96971	16.47	3	0	Median	1.0441	1.147	5.3344	2	1	Median	11097000000	5384100000	5712700000	2348300000	1182600000	1165600000	2733400000	1312800000	1420500000	3284600000	1591800000	1692800000	2730600000	1296800000	1433700000	35374	916	33482	218068;218069;218070;218071;218072;218073;218074;218075;218076;218077;218078	294204;294205;294206;294207;294208;294209;294210;294211;294212;294213;294214;294215;294216;294217;294218;294219;294220;294221;294222	294219			19	
LYDAYELKHALK	2	Acetyl (K)	1504.7926	0.79257999	916	P08758	ANXA5	Annexin A5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	1	2	3	2	74.792	64.928	2;3	9.4006E-16	35171	160513_QHF_FH_JSI11Kac_6	143.24	106.71			0.5704	0.60833	121.75	8	1	Median	1.0284	0.86836	NaN	1	0	Median	3.4255	4.0434	164.81	2	1	Median	0.37082	0.35116	13.088	3	0	Median	0.5704	0.60833	13.737	2	0	Median	597590000	411360000	186230000	31429000	12228000	19201000	7774900	2202000	5572900	461110000	339360000	121760000	97277000	57575000	39702000	35375	916	33483	218079;218080;218081;218082;218083;218084;218085;218086	294223;294224;294225;294226;294227;294228;294229;294230	294225	672		8	
LYDEGDPSEK	1	Unmodified	1151.4982	0.49824846	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.888	14.434	2	5.0712E-05	12006	160511_QHF_FH_JSI10i_1	92.838	73.051			0.94104	0.90031	16.299	4	0	Median	1.0054	0.85939	NaN	1	0	Median	0.64085	0.77381	NaN	1	0	Median	1.1662	1.136	NaN	1	0	Median	0.88075	0.94318	NaN	1	0	Median	336580000	168050000	168530000	65528000	30535000	34993000	79649000	46042000	33607000	99425000	42772000	56652000	91978000	48704000	43274000	35376	4217	33484	218087;218088;218089;218090	294231;294232;294233;294234;294235;294236;294237	294235			7	
LYDFYLFK	1	Unmodified	1107.5641	0.56408361	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	84.882	75.758	2	0.0027771	40371	160513_QHF_FH_JSI12Kac_6	89.046	52.205			0.79408	0.74444	13.241	3	0	Median	0.88676	0.74444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68256	0.64341	NaN	1	0	Median	0.79408	0.8381	NaN	1	0	Median	485300000	244000000	241300000	138180000	69989000	68190000	0	0	0	163060000	98589000	64473000	184060000	75424000	108640000	35377	2800	33485	218091;218092;218093	294238;294239;294240;294241;294242	294242			5	
LYDGLFK	1	Unmodified	854.4538	0.45380487	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	51.32	50.614	2	0.016664	44285	160511_QHF_FH_JSI9i_2	62.714	18.103			1.0054	1.1077	17.562	8	0	Median	1.4751	1.2565	NaN	1	0	Median	0.93701	1.1225	1.8173	2	0	Median	1.0682	1.0563	10.163	2	0	Median	0.84237	0.94788	22.495	3	0	Median	1877700000	967950000	909720000	304430000	135660000	168770000	404350000	204980000	199360000	611130000	298320000	312820000	557750000	328990000	228770000	35378	2734	33486	218094;218095;218096;218097;218098;218099;218100;218101	294243;294244;294245;294246;294247;294248;294249	294246			7	
LYDIDVAK	1	Unmodified	935.4964	0.49639797	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	5.41	8	3	3			2	2	1		5	5	5	4	46.166	42.741	1;2	0.00091687	38339	160511_QHF_FH_JSI10i_1	96.492	60.306			1.0069	1.016	47.529	19	2	Median	1.1383	0.91826	69.908	5	1	Median	0.96764	1.1563	37.28	5	1	Median	1.0069	0.98303	17.886	5	0	Median	0.98273	1.0511	55.525	4	0	Median	16595000000	7503300000	9092100000	4475400000	1604100000	2871300000	4620200000	2385200000	2235000000	4018700000	1852600000	2166200000	3481000000	1661400000	1819600000	35379	2017	33487	218102;218103;218104;218105;218106;218107;218108;218109;218110;218111;218112;218113;218114;218115;218116;218117;218118;218119;218120	294250;294251;294252;294253;294254;294255;294256;294257;294258;294259;294260;294261;294262;294263;294264;294265;294266;294267;294268;294269;294270;294271;294272;294273;294274;294275	294262			25	
LYDIILQNLVELLQLPGLEEDK	1	Unmodified	2567.4098	0.40982138	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	103.55	95.969	3	9.142E-29	57819	160513_QHF_FH_JSI10Kac_6	149.84	136.96			0.79382	0.9537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79382	0.9537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	374510000	183640000	190870000	0	0	0	302730000	144920000	157810000	0	0	0	71781000	38727000	33055000	35380	5295	33488	218121;218122	294276;294277;294278;294279	294278			4	
LYDILGVPPGASENELK	1	Unmodified	1813.9462	0.9461801	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	81.872	81.28	2	4.4134E-05	71837	160511_QHF_FH_JSI9i_1	85.554	74.649			1.1445	0.80343	25.139	4	2	Linear	1.365	1.1069	23.462	2	1	Median	0.65332	0.74307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1245	1.1784	NaN	1	1	Median	79636000	40407000	39229000	37325000	18547000	18778000	21083000	10802000	10281000	0	0	0	21228000	11058000	10170000	35381	456	33489	218123;218124;218125;218126;218127;218128	294280;294281;294282;294283;294284;294285;294286;294287	294284			8	
LYDKIDPEK	2	Acetyl (K)	1161.5918	0.59175492	174	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				2	1	1	49.595	40.05	2	0.002142	21385	160513_QHF_FH_JSI10Kac_3	85.377	57.635			0.77336	0.89612	28.949	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81535	0.98852	9.9402	2	0	Median	0.54959	0.54418	NaN	1	0	Median	0.79491	0.87152	NaN	1	0	Median	114740000	63557000	51180000	0	0	0	45390000	26703000	18688000	34389000	20411000	13978000	34959000	16444000	18515000	35382	174	33490	218129;218130;218131;218132	294288;294289;294290;294291	294291	95		4	
LYDLAKNADK	2	Acetyl (K)	1191.6136	0.61355299	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.001	37.561	2	0.040156	22191	160513_QHF_FH_JSI11Kac_4	45.161	25.374			0.46191	0.45176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46191	0.45176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6100100	4755100	1345000	0	0	0	0	0	0	6100100	4755100	1345000	0	0	0	35383	3503	33491	218133	294292	294292			1	
LYDLDNDGYITR	0	Unmodified	1456.6834	0.68342347	1982	P62166	NCS1	Neuronal calcium sensor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0.632							1	3	1		1	2	2	64.352	53.806	2	0.0071841	29202	160513_QHF_FH_JSI11Kac_5	56.783	49.504			0.83993	0.94303	29.316	5	1	Median	NaN	NaN	NaN	0	0	Median	0.82229	0.94753	NaN	1	0	Median	0.82155	0.80448	22.472	2	1	Median	1.0976	1.1856	37.704	2	0	Median	28985000	16023000	12962000	0	0	0	3084700	1569200	1515400	19397000	11670000	7727200	6503600	2783800	3719800	35384	1982	33492	218134;218135;218136;218137;218138	294293;294294;294295;294296;294297	294296			5	
LYDLNHNEIGELIR	0	Unmodified	1697.8737	0.87368386	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	72.122	71.086	2;3	0.0021966	62672	160511_QHF_FH_JSI9i_2	77.124	40.599			0.44936	0.53193	82.266	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77695	0.95168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.2599	0.29732	NaN	1	0	Median	489410000	299110000	190300000	0	0	0	190630000	83282000	107350000	0	0	0	298780000	215830000	82950000	35385	552	33493	218139;218140;218141	294298;294299	294298			1	
LYDLNMPAYVK	1	Unmodified	1325.669	0.66895938	1095	P16333	NCK1	Cytoplasmic protein NCK1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		70.18	69.57	2	0.00052328	60894	160511_QHF_FH_JSI11i_2	85.533	59.077			1.445	1.4357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.445	1.4357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50689000	16418000	34271000	0	0	0	0	0	0	50689000	16418000	34271000	0	0	0	35386	1095	33494	218142;218143	294300;294301	294301			2	
LYDLVAGSNCLK	1	Unmodified	1351.6806	0.6805867	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		57.123	56.717	2	0.013582	51352	160511_QHF_FH_JSI11i_1	53.597	34.243			0.2985	0.32278	19.284	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31157	0.36993	NaN	1	1	Median	0.28598	0.28163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65011000	46351000	18661000	0	0	0	37412000	27734000	9677600	27599000	18616000	8983000	0	0	0	35387	1558	33495	218144;218145	294302;294303	294302			2	
LYDMADVWVK	1	Unmodified	1238.6005	0.60054547	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	68.36	67.966	3	0.044916	60309	160511_QHF_FH_JSI11i_3	17.026	0			1.2678	1.1754	6.8222	3	0	Median	1.2678	1.0927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3899	1.2523	NaN	1	0	Median	1.1269	1.1754	NaN	1	0	Median	106560000	48920000	57643000	23764000	9189400	14574000	0	0	0	33690000	12933000	20757000	49110000	26798000	22312000	35388	3962	33496	218146;218147;218148	294304;294305;294306;294307;294308	294304			5	
LYDMVLQFLR	0	Unmodified	1296.69	0.69002918	3804	Q8WX92	NELFB	Negative elongation factor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		91.797	83.84	2	3.4115E-05	46600	160513_QHF_FH_JSI9Kac_6	103.8	83.245			0.77942	0.74235	41.836	3	0	Median	1.5465	1.3285	NaN	1	0	Median	0.51027	0.59003	NaN	1	0	Median	0.77942	0.74235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	166220000	81579000	84641000	44801000	18799000	26002000	56201000	26219000	29982000	65217000	36560000	28657000	0	0	0	35389	3804	33497	218149;218150;218151	294309;294310;294311;294312	294311			3	
LYDNLLEQNLIR	0	Unmodified	1502.8093	0.80929269	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	79.8	79.16	2	2.6259E-07	69472	160511_QHF_FH_JSI11i_2	152.07	121.9			1.0884	1.0646	7.767	9	4	Median	1.2254	1.016	1.167	2	0	Median	0.90395	1.0646	11.343	3	2	Median	1.125	1.1232	1.8444	2	1	Median	0.97456	1.0353	10.286	2	1	Median	1827300000	898630000	928660000	337480000	151910000	185570000	510480000	283960000	226520000	547080000	244080000	303000000	432240000	218680000	213570000	35390	109	33498	218152;218153;218154;218155;218156;218157;218158;218159;218160	294313;294314;294315;294316;294317;294318;294319;294320;294321;294322;294323;294324	294322			12	
LYDPTEGMVSVDGQDIR	0	Unmodified	1893.8778	0.87784254	894	P08183	ABCB1	Multidrug resistance protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			68.253	67.969	2	0.0063407	61573	160511_QHF_FH_JSI10i_1	66.989	34.659			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35391	894	33499	218161	294325	294325			1	
LYDRDVASAAPEK	1	Unmodified	1433.7151	0.71505795	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	3	3	24.066	23.639	2;3	5.1127E-05	19489	160511_QHF_FH_JSI12i_3	76.358	59.146			0.81828	0.87737	24.661	8	3	Median	NaN	NaN	NaN	0	0	Median	0.66157	0.82844	37.693	2	1	Median	1.1525	1.0927	28.777	3	1	Plateau	0.71658	0.74079	21.176	3	1	Plateau	747430000	383900000	363530000	0	0	0	115710000	74645000	41065000	348890000	163890000	185000000	282840000	145370000	137470000	35392	5534	33500	218162;218163;218164;218165;218166;218167;218168;218169	294326;294327;294328;294329;294330;294331;294332;294333	294331			8	
LYDVPANSMR	0	Unmodified	1164.5597	0.55974328	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	2	3	1	39.798	36.279	2	1.5503E-05	31002	160511_QHF_FH_JSI12i_2	111.95	94.562			1.1498	1.1348	19.882	7	2	Median	1.2632	1.0915	NaN	1	0	Median	0.93156	1.126	8.6131	2	1	Median	1.1498	1.1348	3.3467	3	0	Median	1.713	1.8914	NaN	1	1	Median	1984700000	827260000	1157500000	287990000	122480000	165510000	224270000	128720000	95551000	858560000	398010000	460550000	613900000	178050000	435850000	35393	359	33501	218170;218171;218172;218173;218174;218175;218176	294334;294335;294336;294337;294338;294339;294340	294335			7	
LYDVVAVFPK	1	Unmodified	1149.6434	0.64339656	2086	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.33	6.34		3					1	2		1	1	2	2	79.007	73.321	2	0.0074824	66729	160511_QHF_FH_JSI11i_2	51.415	31.629			1.0387	1.1562	16.724	6	1	Median	1.0091	0.86744	NaN	1	0	Median	1.0693	1.2695	NaN	1	0	Median	1.0268	1.031	18.772	2	1	Median	1.054	1.1968	7.4479	2	0	Median	224680000	107340000	117340000	41400000	17089000	24311000	4126500	1914100	2212400	105230000	51226000	54000000	73930000	37114000	36816000	35394	2086	33502	218177;218178;218179;218180;218181;218182	294341;294342;294343;294344;294345	294344			5	
LYEAYLPETFR	0	Unmodified	1400.6976	0.69761697	3753	Q8WU79	SMAP2	Stromal membrane-associated protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.233	71.28	2	0.01949	61472	160511_QHF_FH_JSI12i_2	42.001	23.256			3.2642	3.4054	33.544	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.668	2.6863	NaN	1	0	Median	3.9937	4.317	NaN	1	0	Median	101710000	33663000	68044000	0	0	0	0	0	0	69224000	23669000	45555000	32483000	9993300	22489000	35395	3753	33503	218183;218184	294346	294346			1	
LYEEGSNK	1	Unmodified	938.43453	0.434526	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	3	2	7.8798	6.6281	2	0.00010336	5180	160511_QHF_FH_JSI12i_1	129.4	60.482			0.83639	0.90929	14.087	8	2	Median	1.1689	1.0233	NaN	1	0	Median	0.81248	0.97145	5.8681	2	1	Median	0.70779	0.69423	12.561	3	1	Plateau	0.77768	0.86147	17.728	2	0	Median	5332600000	2681500000	2651100000	28236000	14451000	13785000	1793700000	970600000	823070000	1834600000	850300000	984330000	1676100000	846160000	829940000	35396	1266	33504	218185;218186;218187;218188;218189;218190;218191;218192	294347;294348;294349;294350;294351;294352;294353;294354;294355;294356;294357	294351			11	
LYEEKTGNAWHSK	2	Acetyl (K)	1603.7631	0.76307078	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	39.357	30.098	3	8.6888E-07	16206	160513_QHF_FH_JSI9Kac_6	104.17	93.971			0.83053	0.98244	32.713	5	0	Median	1.148	0.98244	NaN	1	0	Median	0.83053	1.0032	NaN	1	0	Median	0.6565	0.64389	NaN	1	0	Median	1.0182	1.1144	47.093	2	0	Median	69138000	39333000	29804000	11452000	6004900	5447200	21787000	11504000	10283000	20715000	13472000	7243600	15183000	8352000	6831000	35397	939	33505	218193;218194;218195;218196;218197	294358;294359;294360;294361;294362;294363;294364;294365;294366	294361	701;702		9	
LYEFWWSLSR	0	Unmodified	1385.6768	0.67682195	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				89.456	80.787	2	0.025907	45001	160513_QHF_FH_JSI9Kac_6	56.258	44.392			0.61371	0.52631	NaN	1	1	Median	0.61371	0.52631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53836000	26123000	27713000	53836000	26123000	27713000	0	0	0	0	0	0	0	0	0	35398	3736	33506	218198	294367	294367			1	
LYELDGLR	0	Unmodified	977.5182	0.51819605	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	61.048	50.325	2	0.0035298	27650	160513_QHF_FH_JSI10Kac_4	85.813	32.133			0.82405	0.86633	14.421	6	0	Median	1.0496	0.88148	NaN	1	0	Median	0.83042	0.99638	22.23	2	0	Median	0.93344	0.921	NaN	1	0	Median	0.71981	0.79195	2.4445	2	0	Median	253760000	140260000	113490000	43611000	22017000	21594000	88382000	47128000	41254000	58637000	34430000	24207000	63128000	36688000	26440000	35399	5663	33507	218199;218200;218201;218202;218203;218204	294368;294369;294370;294371;294372	294369			5	
LYELHVFTFGSR	0	Unmodified	1467.751	0.75104953	5655	Q9Y5B0	CTDP1	RNA polymerase II subunit A C-terminal domain phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	3	5	2	2	77.018	72.28	2;3	2.6492E-12	38832	160513_QHF_FH_JSI10Kac_6	127.42	99.255			1.2247	1.1663	35.603	9	2	Median	1.8139	1.5645	36.598	2	1	Median	0.87196	1.0443	10.44	3	1	Median	1.612	1.5229	37.728	2	0	Median	1.4787	1.5735	61.412	2	0	Median	1335800000	683260000	652510000	259630000	95109000	164530000	637270000	383890000	253370000	273970000	116880000	157080000	164890000	87371000	77524000	35400	5655	33508	218205;218206;218207;218208;218209;218210;218211;218212;218213;218214;218215;218216	294373;294374;294375;294376;294377;294378;294379;294380;294381;294382;294383;294384;294385;294386	294385			14	
LYELIITR	0	Unmodified	1019.6015	0.60153174	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.24		2						1	4	2	1	2	2	69.7	61.809	2	0.00094857	32353	160513_QHF_FH_JSI12Kac_6	103.83	32.537			0.87385	0.91773	64.777	6	1	Median	1.0879	0.92036	31.409	2	0	Median	1.036	1.2008	NaN	1	0	Median	0.2153	0.21113	NaN	1	0	Median	0.85091	0.91773	7.6041	2	1	Median	220240000	119350000	100900000	24958000	12720000	12238000	51257000	16955000	34302000	42297000	37940000	4356600	101730000	51732000	50001000	35401	871	33509	218217;218218;218219;218220;218221;218222;218223	294387;294388;294389;294390	294390			4	
LYEMVSYCQNISK	1	Unmodified	1633.748	0.74801434	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	55.199	54.687	2	5.9412E-07	46633	160511_QHF_FH_JSI12i_2	93.058	66.385			0.86893	0.85664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86893	0.85664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47384000	21732000	25652000	0	0	0	0	0	0	47384000	21732000	25652000	0	0	0	35402	1579	33510	218224;218225;218226	294391;294392;294393	294391			3	
LYENFISEFEHR	0	Unmodified	1582.7416	0.74160705	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	1	3	3	75.449	71.99	3	6.0278E-06	64821	160511_QHF_FH_JSI9i_2	109.15	97.875			1.0957	1.073	16.804	9	0	Median	1.276	1.0971	26.854	2	0	Median	0.73984	0.91408	NaN	1	0	Median	1.0957	1.073	13.832	3	0	Median	1.1861	1.2482	20.252	3	0	Median	2722400000	1348100000	1374300000	319550000	134390000	185160000	535100000	308440000	226670000	1136200000	540240000	595980000	731520000	365000000	366520000	35403	5441	33511	218227;218228;218229;218230;218231;218232;218233;218234;218235	294394;294395;294396;294397;294398;294399;294400;294401;294402;294403;294404;294405;294406;294407	294398			14	
LYEPDQLQELK	1	Unmodified	1374.7031	0.70309628	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	57.486	56.903	2	1.0744E-05	51573	160511_QHF_FH_JSI11i_1	109.79	76.791			0.9743	1.0122	20.134	7	7	Median	1.2461	1.0122	NaN	1	1	Median	0.81513	0.9685	25.209	2	2	Median	1.2066	1.1942	19.745	2	2	Median	0.82948	0.86932	19.061	2	2	Median	1331100000	660480000	670620000	173870000	73078000	100790000	356770000	194620000	162160000	401700000	186080000	215620000	398760000	206710000	192050000	35404	5147	33512	218236;218237;218238;218239;218240;218241;218242	294408;294409;294410;294411;294412;294413;294414	294409			7	
LYEQHHVVQDMLVPMK	1	Unmodified	1965.9805	0.98047389	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			58.706	57.77	4	0.0010756	50690	160511_QHF_FH_JSI10i_2	51.147	33.23			0.74347	0.77358	30.112	2	0	Median	0.70633	0.62522	NaN	1	0	Median	0.78255	0.95715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55005000	33206000	21799000	16237000	5897100	10340000	38768000	27308000	11459000	0	0	0	0	0	0	35405	2664	33513	218243;218244	294415;294416	294416			2	
LYEQILAENEK	1	Unmodified	1348.6874	0.68744622	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.871	46.474	2	0.00053258	39789	160511_QHF_FH_JSI12i_2	85.355	77.134			0.38328	0.41821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38328	0.41821	NaN	1	1	Median	38998000	25492000	13506000	0	0	0	0	0	0	0	0	0	38998000	25492000	13506000	35406	227	33514	218245	294417	294417			1	
LYEQLSGK	1	Unmodified	936.49165	0.49164694	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.24	5.69	6	5	1			1	3	1		5	3	4	5	24.668	21.543	2	0.00054591	13526	160513_QHF_FH_JSI11Kac_4	116.88	54.169			1.8257	2.0009	77.619	17	15	Median	2.6022	2.208	79.426	5	5	Median	1.6815	2.0009	40.875	3	2	Plateau	1.3809	1.3657	113.51	4	3	Median	2.1194	2.2417	79.536	5	5	Median	12509000000	6102700000	6406600000	3401000000	1759900000	1641200000	2433700000	1202400000	1231300000	2414000000	876540000	1537500000	4260600000	2263900000	1996700000	35407	1343	33515	218246;218247;218248;218249;218250;218251;218252;218253;218254;218255;218256;218257;218258;218259;218260;218261;218262	294418;294419;294420;294421;294422;294423;294424;294425;294426;294427;294428;294429;294430;294431;294432;294433;294434;294435;294436	294426			19	
LYESLLVGSLPDMNK	1	Unmodified	1677.8648	0.86475866	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				89.261	88.858	3	0.0076071	78260	160511_QHF_FH_JSI9i_2	42.568	31.307			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35408	1042	33516	218263	294437	294437			1	
LYESVKK	2	Unmodified	865.49092	0.49091866	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		9.3495	9.3495	3	0.044615	7032	160511_QHF_FH_JSI11i_3	28.218	11.254			2.1681	1.9803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1681	1.9803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53123000	22479000	30644000	0	0	0	0	0	0	53123000	22479000	30644000	0	0	0	35409	1576	33517	218264	294438	294438			1	
LYEWTTEK	1	Unmodified	1068.5128	0.51277632	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	2	2	37.49	36.772	2	0.0020172	31365	160511_QHF_FH_JSI12i_2	83.265	65.879			0.90449	0.91713	16.989	7	1	Median	1.4045	1.1931	NaN	1	0	Median	0.67714	0.81069	12.453	2	1	Median	0.93619	0.92948	1.891	2	0	Median	0.94134	1.009	21.658	2	0	Median	1274600000	693630000	581010000	141180000	63571000	77606000	371750000	214700000	157050000	408920000	190750000	218170000	352790000	224610000	128180000	35410	2734	33518	218265;218266;218267;218268;218269;218270;218271;218272	294439;294440;294441;294442;294443;294444;294445;294446;294447;294448;294449;294450;294451	294443			13	
LYFEELSLER	0	Unmodified	1297.6554	0.65541781	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	4	2	2	79.136	75.458	2	2.6796E-05	40312	160513_QHF_FH_JSI10Kac_6	104.2	77.408			1.0041	1.0436	10.73	11	3	Median	1.2749	1.0531	4.965	3	0	Median	0.92514	1.091	13.703	4	2	Median	0.9786	0.97913	9.0179	2	1	Median	0.83612	0.90835	1.6963	2	0	Median	2613700000	1238100000	1375600000	502480000	189980000	312500000	741350000	379310000	362040000	851370000	411920000	439460000	518450000	256850000	261600000	35411	1372	33519	218273;218274;218275;218276;218277;218278;218279;218280;218281;218282;218283	294452;294453;294454;294455;294456;294457;294458;294459;294460;294461;294462;294463;294464;294465;294466;294467	294467			16	
LYFHLGIWPEK	1	Unmodified	1401.7445	0.74450759	631	O94952	FBXO21	F-box only protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		83.654	75.812	3	1.7096E-05	42771	160513_QHF_FH_JSI10Kac_6	95.618	73.04			0.89693	1.0421	41.223	3	1	Median	0.89693	0.77208	NaN	1	0	Median	0.88032	1.0421	NaN	1	1	Median	1.7359	1.7443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109180000	51168000	58011000	39053000	17503000	21550000	34168000	21759000	12409000	35958000	11907000	24051000	0	0	0	35412	631	33520	218284;218285;218286	294468;294469;294470;294471	294471			4	
LYFISLLMGGTTNQR	0	Unmodified	1712.892	0.89197646	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			94.644	88.923	2;3	1.2111E-24	51174	160513_QHF_FH_JSI10Kac_6	129.54	122.13			0.80633	0.9426	14.559	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80633	0.9426	14.559	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133800000	66862000	66934000	0	0	0	133800000	66862000	66934000	0	0	0	0	0	0	35413	4779	33521	218287;218288;218289	294472;294473;294474	294473			3	
LYFKPIGDPVFAR	1	Unmodified	1521.8344	0.83438523	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.464	74.677	3	0.0098101	64585	160511_QHF_FH_JSI12i_3	32.734	20.314			0.94834	0.94282	6.4997	4	0	Median	1.2912	1.0698	NaN	1	0	Median	0.81592	0.94095	NaN	1	0	Median	1.0226	0.93365	NaN	1	0	Median	0.87946	0.94469	NaN	1	0	Median	307410000	128120000	179300000	99727000	40852000	58875000	68307000	34975000	33332000	91657000	28937000	62720000	47723000	23353000	24370000	35414	28	33522	218290;218291;218292;218293	294475;294476;294477;294478;294479;294480;294481	294480			7	
LYFLPEDTPQGR	0	Unmodified	1434.7143	0.71432967	2580	Q14865	ARID5B	AT-rich interactive domain-containing protein 5B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.815	66.24	2	0.0088035	57842	160511_QHF_FH_JSI11i_2	48.64	22.126			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35415	2580	33523	218294	294482	294482			1	
LYFLQCETCHSR	0	Unmodified	1612.7126	0.71263189	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			53.55	44.966	3	0.0025182	24812	160513_QHF_FH_JSI10Kac_6	48.277	43.198			1.2589	1.5279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2589	1.5279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21070000	9988700	11082000	0	0	0	21070000	9988700	11082000	0	0	0	0	0	0	35416	1169	33524	218295	294483	294483			1	
LYFSQQTYYR	0	Unmodified	1367.651	0.65100113	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	59.734	50.438	2	7.3248E-06	26750	160513_QHF_FH_JSI9Kac_6	110.87	69.885			1.013	1.0288	21.605	4	0	Median	1.7285	1.479	NaN	1	0	Median	0.77643	0.89186	NaN	1	0	Median	1.0772	1.0286	NaN	1	0	Median	0.95268	1.029	NaN	1	0	Median	127280000	61417000	65865000	33507000	10774000	22733000	60146000	38195000	21951000	18369000	6463600	11905000	15260000	5985000	9275300	35417	1406	33525	218296;218297;218298;218299	294484;294485;294486;294487;294488;294489;294490	294486			7	
LYFSTCPFR	0	Unmodified	1189.559	0.559015	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	66.909	66.091	2	0.00041219	55336	160511_QHF_FH_JSI10i_3	81.191	71.774			1.0487	1.1406	21.757	4	0	Median	1.7298	1.4004	NaN	1	0	Median	0.89534	1.0427	NaN	1	0	Median	0.89838	0.85109	NaN	1	0	Median	1.2241	1.2476	NaN	1	0	Median	681090000	343210000	337890000	63541000	22915000	40626000	121530000	68896000	52630000	253570000	133150000	120410000	242460000	118240000	124220000	35418	558	33526	218300;218301;218302;218303	294491;294492;294493;294494	294492			4	
LYFYQMLLAVQYLHENGIIHR	0	Unmodified	2620.3624	0.36243445	757	O96017	CHEK2	Serine/threonine-protein kinase Chk2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.41	90.689	4	5.4671E-17	52545	160513_QHF_FH_JSI10Kac_6	128.32	120.33			0.62541	0.74995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62541	0.74995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	455790000	345310000	110470000	0	0	0	455790000	345310000	110470000	0	0	0	0	0	0	35419	757	33527	218304	294495	294495			1	
LYGADGLVFGALTEDGHIDK	1	Unmodified	2090.032	0.032034995	4993	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		88.498	87.987	3	1.0177E-08	77367	160511_QHF_FH_JSI11i_2	90.22	75.966			1.0975	0.95568	8.9606	3	0	Plateau	1.1239	0.96655	NaN	1	0	Median	0.77502	0.95568	NaN	1	0	Median	1.0975	1.1221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123440000	69640000	53795000	41414000	24736000	16678000	41715000	22571000	19145000	40306000	22334000	17973000	0	0	0	35420	4993	33528	218305;218306;218307	294496;294497;294498;294499	294498			4	
LYGAQFHPEVGLTENGK	1	Unmodified	1858.9214	0.92136233	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.47	3.38		6	8						1	3	3	4	5	56.475	55.129	2;3	1.9665E-30	48828	160511_QHF_FH_JSI11i_3	191.26	172.01			1.1041	1.1115	14.839	13	8	Median	1.3343	1.1116	6.7553	2	1	Median	0.92702	1.111	19.408	2	2	Median	1.0207	0.95881	12.995	4	3	Median	1.1335	1.2274	15.923	5	2	Median	7054300000	3175800000	3878500000	341760000	139750000	202010000	473400000	233070000	240330000	2700500000	1231700000	1468800000	3538600000	1571300000	1967300000	35421	1693	33529	218308;218309;218310;218311;218312;218313;218314;218315;218316;218317;218318;218319;218320;218321;218322	294500;294501;294502;294503;294504;294505;294506;294507;294508;294509;294510;294511;294512;294513;294514;294515;294516;294517;294518;294519	294501			20	
LYGDADYLEER	0	Unmodified	1342.6041	0.60411052	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.908	46.249	2	0.0040585	42016	160511_QHF_FH_JSI12i_1	66.19	51.521			0.95334	1.0076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95334	1.0076	NaN	1	1	Median	436010000	240730000	195280000	0	0	0	0	0	0	0	0	0	436010000	240730000	195280000	35422	1126	33530	218323	294520	294520			1	
LYGDESELHFWTVAAHYLHSLSQEK	1	Unmodified	2959.4141	0.41407191	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	92.992	84.772	4;5	2.073E-42	45757	160513_QHF_FH_JSI12Kac_6	162.77	156.55			1.0247	0.89604	25.881	4	1	Median	1.0322	0.87781	24.37	2	1	Median	0.67121	0.76987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2151	1.2743	NaN	1	0	Median	380870000	187040000	193820000	187850000	83622000	104220000	84842000	46419000	38423000	0	0	0	108180000	57002000	51176000	35423	4564	33531	218324;218325;218326;218327	294521;294522;294523;294524;294525;294526	294524			6	
LYGDLKHLK	2	Acetyl (K)	1127.6339	0.63389451	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	2	1	51.9	42.278	3	0.00061094	23252	160513_QHF_FH_JSI10Kac_6	79.148	55.059			0.88119	1.0304	22.928	5	0	Median	1.2322	1.0569	NaN	1	0	Median	0.88119	1.0304	NaN	1	0	Median	0.71027	0.69482	2.7376	2	0	Median	0.99511	1.0759	NaN	1	0	Median	289770000	174610000	115160000	39698000	22098000	17600000	80217000	45668000	34548000	107360000	68236000	39121000	62495000	38603000	23892000	35424	1367	33532	218328;218329;218330;218331;218332	294527;294528;294529;294530;294531;294532;294533	294533	1302		6	
LYGDVPFIEER	0	Unmodified	1336.6663	0.66631685	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	71.462	70.543	2	0.0016863	60834	160511_QHF_FH_JSI12i_2	61.78	49.932			0.6746	0.63072	20.793	3	0	Median	0.6746	0.56344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6223	0.63072	NaN	1	0	Median	0.78247	0.84312	NaN	1	0	Median	328540000	193630000	134920000	68021000	42055000	25966000	0	0	0	177740000	104810000	72936000	82780000	46766000	36014000	35425	4951	33533	218333;218334;218335	294534;294535;294536	294535			3	
LYGEFADPFK	1	Unmodified	1185.5706	0.57062555	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.107	70.222	2	3.0924E-06	62381	160511_QHF_FH_JSI10i_2	110.87	88.786			1.1435	1.2088	6.126	4	1	Median	1.5092	1.2849	NaN	1	0	Median	0.92137	1.1107	NaN	1	0	Median	1.2085	1.2283	NaN	1	1	Median	1.0821	1.1896	NaN	1	0	Median	776580000	359040000	417540000	157760000	59729000	98030000	145600000	69926000	75669000	292810000	133780000	159030000	180420000	95609000	84808000	35426	558	33534	218336;218337;218338;218339	294537;294538;294539;294540;294541;294542;294543	294542			7	
LYGFLQSTGSLNPLLASFFSK	1	Unmodified	2289.2045	0.20452005	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	99.008	90.58	2;3	0	51453	160513_QHF_FH_JSI11Kac_6	423.95	386.58			0.88623	0.88108	11.949	8	1	Median	1.0222	0.87524	6.9703	2	0	Median	0.85311	1.0117	17.914	2	1	Median	0.87007	0.83141	12.006	2	0	Median	0.80433	0.84853	3.6946	2	0	Median	2217000000	1100600000	1116500000	503670000	237400000	266260000	673730000	360010000	313720000	725840000	313540000	412300000	313810000	189610000	124200000	35427	5460	33535	218340;218341;218342;218343;218344;218345;218346;218347	294544;294545;294546;294547;294548;294549;294550;294551;294552;294553;294554;294555;294556;294557	294544			14	
LYGGFYTDWVSGGQWNHMLGYLAALAK	1	Unmodified	3017.4534	0.4534343	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.615	91.117	3;4	8.0385E-255	54244	160513_QHF_FH_JSI10Kac_6	318.42	300.12			0.98369	1.0711	6.8159	3	0	Median	1.2028	1.0335	NaN	1	0	Median	0.94686	1.1238	6.7904	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1621900000	806260000	815600000	553480000	250100000	303380000	1025600000	556160000	469410000	42808000	0	42808000	0	0	0	35428	5147	33536	218348;218349;218350;218351	294558;294559;294560;294561	294560			3	
LYGLGTGVAQK	1	Unmodified	1105.6132	0.61315906	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.834	40.623	2	0.013473	34708	160511_QHF_FH_JSI12i_3	43.635	32.827			0.98027	0.97946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98027	0.97946	NaN	1	0	Median	42640000	18941000	23698000	0	0	0	0	0	0	0	0	0	42640000	18941000	23698000	35429	5277	33537	218352	294562	294562			1	
LYGLLDPSVFHVK	1	Unmodified	1486.8184	0.81840081	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.523	87.902	3	0.0028262	76005	160511_QHF_FH_JSI12i_2	46.481	46.481			0.81958	1.0231	14.846	4	0	Linear	0.81629	0.70718	NaN	1	0	Median	0.77569	0.96327	NaN	1	0	Median	0.96409	0.9666	NaN	1	0	Median	0.82287	0.91276	NaN	1	0	Median	87655000	45581000	42075000	14309000	7126200	7183000	24162000	12766000	11396000	28641000	12388000	16253000	20543000	13300000	7242500	35430	4471	33538	218353;218354;218355;218356	294563;294564;294565;294566	294563			4	
LYGMIYKPHALQPGK	2	Unmodified	1714.9229	0.92288266	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	56.714	47.452	3;4	0.00021263	25731	160513_QHF_FH_JSI11Kac_6	76.588	70.694			0.91016	0.97447	14.317	6	0	Median	1.2812	1.0946	NaN	1	0	Median	0.9644	1.1231	12.468	2	0	Median	0.90539	0.87684	7.3162	2	0	Median	0.81016	0.89482	NaN	1	0	Median	160570000	74732000	85842000	19485000	9234500	10251000	63930000	28956000	34974000	63275000	29296000	33979000	13884000	7246100	6637900	35431	3308	33539	218357;218358;218359;218360;218361;218362	294567;294568;294569;294570;294571;294572;294573	294567			7	
LYGNDFSQTTISR	0	Unmodified	1500.7209	0.72087161	1062	P14859;Q9UKI9;P09086	POU2F1;POU2F3;POU2F2	POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2	yes	no	0	0	0	0				By MS/MS	2	0		1											1	45.833	44.442	2	0.0049015	38026	160511_QHF_FH_JSI12i_2	62.303	35.919			1.5522	1.7639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5522	1.7639	NaN	1	1	Median	9801600	4425700	5375900	0	0	0	0	0	0	0	0	0	9801600	4425700	5375900	35432	1062	33540	218363	294574	294574			1	
LYGPSSVSFADDFVR	0	Unmodified	1658.794	0.79403655	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.47	4.18	4	8	5					1	1	6	3	5	5	82.239	80.6	2;3	1.301E-14	72556	160511_QHF_FH_JSI10i_2	190.15	175.46			1.0902	1.0232	21.406	18	5	Median	1.1551	0.95432	31.872	5	1	Median	0.81142	0.97917	2.705	3	0	Median	1.095	1.0825	21.295	5	1	Median	1.1473	1.1949	14.187	5	3	Median	6667400000	3225900000	3441500000	1249200000	568980000	680210000	1590000000	865140000	724860000	1753800000	773270000	980520000	2074400000	1018500000	1055900000	35433	1706	33541	218364;218365;218366;218367;218368;218369;218370;218371;218372;218373;218374;218375;218376;218377;218378;218379;218380;218381;218382	294575;294576;294577;294578;294579;294580;294581;294582;294583;294584;294585;294586;294587;294588;294589;294590;294591;294592;294593;294594;294595;294596;294597;294598;294599;294600;294601	294598			27	
LYGPTNFAPIINHVAR	0	Unmodified	1781.9577	0.95768826	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		77.171	76.232	3	4.5844E-11	62735	160511_QHF_FH_JSI9i_3	128.96	118.91			1.1545	0.91557	1.0249	3	1	Plateau	1.1545	0.91557	NaN	1	0	Median	0.77957	0.8978	NaN	1	1	Median	0.97314	0.90193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	350790000	192120000	158670000	164400000	78938000	85463000	113540000	72744000	40792000	72855000	40443000	32413000	0	0	0	35434	4320	33542	218383;218384;218385	294602;294603;294604;294605;294606	294606			5	
LYGPTNFSPIINHVAR	0	Unmodified	1797.9526	0.95260288	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			72.164	70.925	3	2.7751E-22	58367	160511_QHF_FH_JSI9i_3	139.58	134.04			1.0926	0.94184	12.802	3	1	Plateau	1.1243	0.91484	NaN	1	0	Median	0.86696	1.0439	14.549	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	566510000	297420000	269090000	281430000	140610000	140820000	285080000	156810000	128270000	0	0	0	0	0	0	35435	479	33543	218386;218387;218388	294607;294608;294609;294610;294611	294609			5	
LYGSAGPPPTGEEDTAEK	1	Unmodified	1817.8319	0.8319382	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	2	2	35.582	30.864	2	1.691E-137	27670	160511_QHF_FH_JSI10i_1	286.26	268.45			1.0643	1.0551	19.509	8	0	Median	0.97794	0.80919	NaN	1	0	Median	0.7864	0.9479	22.615	3	0	Plateau	1.0643	1.0421	7.0635	2	0	Median	1.0452	1.1311	15.138	2	0	Median	2514200000	1183300000	1330800000	548410000	251340000	297060000	614300000	298410000	315890000	681220000	286070000	395150000	670240000	347520000	322720000	35436	982	33544	218389;218390;218391;218392;218393;218394;218395;218396	294612;294613;294614;294615;294616;294617;294618;294619;294620;294621;294622;294623;294624;294625;294626;294627;294628;294629;294630;294631;294632;294633;294634;294635;294636;294637;294638	294628			27	
LYGSAGPPPTGEEDTAEKDEL	1	Unmodified	2174.9855	0.98553831	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	4.33	11					2				3	2	4	4	52.268	50.006	2;3	3.4877E-238	45272	160511_QHF_FH_JSI12i_1	347.65	315.15			0.98686	0.9071	18.655	11	1	Median	0.98349	0.79197	1.69	2	0	Median	0.75723	0.87815	0.34964	2	0	Median	1.0475	1.0158	13.264	3	0	Median	1.0748	1.1509	22.324	4	1	Median	7924500000	4254100000	3670400000	1596000000	833270000	762680000	2187800000	1213800000	974040000	1696200000	911950000	784290000	2444500000	1295100000	1149300000	35437	982	33545	218397;218398;218399;218400;218401;218402;218403;218404;218405;218406;218407;218408;218409	294639;294640;294641;294642;294643;294644;294645;294646;294647;294648;294649;294650;294651;294652;294653;294654;294655;294656;294657;294658;294659;294660;294661;294662;294663;294664;294665;294666;294667;294668;294669;294670;294671;294672;294673;294674;294675;294676;294677;294678	294650			38	
LYGSGDQEAWQK	1	Unmodified	1380.631	0.63099397	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	32.568	32.06	2	2.2445E-05	28577	160511_QHF_FH_JSI10i_1	132.01	114.19			0.88718	0.73924	28.415	7	6	Median	0.88718	0.72681	NaN	1	0	Median	0.82579	0.96243	39.811	2	2	Median	1.005	0.99282	41.708	2	2	Median	0.78376	0.82599	25.25	2	2	Median	821300000	421480000	399820000	106230000	54526000	51709000	228310000	119750000	108560000	270290000	133510000	136780000	216470000	113690000	102780000	35438	1313	33546	218410;218411;218412;218413;218414;218415;218416	294679;294680;294681;294682;294683;294684;294685;294686	294684			8	
LYHDIAQQAFK	1	Unmodified	1332.6826	0.68263561	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	5.69		9	5						4	4	2	6	6	39.279	36.939	2;3	7.4778E-07	31582	160511_QHF_FH_JSI11i_2	93.096	89.3			0.80003	0.84403	37.578	16	7	Median	1.0877	0.92642	35.434	4	2	Median	0.82615	1.0094	1.7251	2	0	Median	0.71312	0.67206	56.87	5	3	Median	0.74729	0.83775	15.37	5	2	Median	2661900000	1395500000	1266400000	398220000	187610000	210610000	616040000	330890000	285150000	1016500000	545320000	471190000	631080000	331680000	299410000	35439	2502	33547	218417;218418;218419;218420;218421;218422;218423;218424;218425;218426;218427;218428;218429;218430;218431;218432;218433;218434	294687;294688;294689;294690;294691;294692;294693;294694;294695;294696;294697;294698;294699;294700;294701;294702;294703;294704;294705;294706;294707;294708;294709;294710	294702			24	
LYHDPNVNGGTELEPVEGNPYRR	0	Unmodified	2625.2572	0.25717734	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		46.269	46.269	4	3.7127E-05	40843	160511_QHF_FH_JSI11i_3	55.128	44.29			1.1398	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1398	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52959000	25768000	27191000	0	0	0	0	0	0	52959000	25768000	27191000	0	0	0	35440	1895	33548	218435	294711	294711			1	
LYHEATTDTYK	1	Unmodified	1340.6248	0.62484596	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	16.293	14.67	2;3	2.4069E-06	12369	160511_QHF_FH_JSI10i_2	109.6	89.859			0.91146	0.94796	46.475	9	6	Median	0.61099	0.52736	82.933	2	1	Median	0.56569	0.69768	57.39	2	2	Median	0.91786	0.90148	22.494	3	2	Median	0.96183	1.0834	7.7457	2	1	Median	755080000	419860000	335220000	163980000	110940000	53034000	170940000	103220000	67713000	257470000	129860000	127600000	162700000	75832000	86865000	35441	4438	33549	218436;218437;218438;218439;218440;218441;218442;218443;218444	294712;294713;294714;294715;294716;294717;294718;294719	294719			7	
LYHGLELAK	1	Unmodified	1042.5811	0.58113065	523	O75419	CDC45	Cell division control protein 45 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.445	33.513	3	0.009967	29293	160511_QHF_FH_JSI10i_2	37.508	33.669			0.7896	0.7282	60.932	4	2	Median	0.76601	0.64783	NaN	1	0	Median	1.2216	1.5016	NaN	1	0	Median	0.81392	0.81854	NaN	1	1	Median	0.31297	0.3439	NaN	1	1	Median	85339000	46179000	39160000	22068000	11968000	10101000	22545000	11541000	11004000	28506000	13482000	15024000	12220000	9188700	3031500	35442	523	33550	218445;218446;218447;218448	294720;294721;294722;294723	294723			4	
LYHNEVEIEK	1	Unmodified	1272.635	0.63501672	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	24.399	23.525	2	0.0005398	20325	160511_QHF_FH_JSI10i_2	71.451	48.022			1.2297	1.1847	31.41	4	1	Median	1.5246	1.2908	NaN	1	0	Median	1.4036	1.7237	NaN	1	0	Median	1.0773	1.0874	NaN	1	0	Median	0.7311	0.81419	NaN	1	1	Median	193850000	79377000	114470000	34484000	13482000	21002000	45737000	17444000	28293000	85883000	33532000	52350000	27743000	14918000	12824000	35443	2560	33551	218449;218450;218451;218452	294724;294725	294725			2	
LYHPTVPLAR	0	Unmodified	1165.6608	0.66077796	3397	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			41.787	40.258	3	0.0040191	32813	160511_QHF_FH_JSI9i_3	37.73	29.495			0.93932	0.91151	21.224	2	1	Median	0.97055	0.78448	NaN	1	1	Median	0.9091	1.0591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131030000	61818000	69216000	54909000	22870000	32039000	76125000	38948000	37177000	0	0	0	0	0	0	35444	3397	33552	218453;218454	294726;294727;294728	294728			3	
LYHSWFVK	1	Unmodified	1078.56	0.56000128	4687	Q9H330	TMEM245	Transmembrane protein 245	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	4	3	2	50.491	45.714	2;3	2.8268E-05	24922	160513_QHF_FH_JSI10Kac_6	107.29	93.088			1.1954	1.2422	110.7	11	5	Median	1.7693	1.4712	41.111	3	1	Plateau	0.82932	0.9819	40.533	4	2	Median	5.5084	5.2773	213.38	2	1	Median	2.9623	3.1354	135.02	2	1	Median	2011300000	355240000	1656100000	212480000	96307000	116170000	234730000	137310000	97425000	966270000	57149000	909120000	597830000	64481000	533350000	35445	4687	33553	218455;218456;218457;218458;218459;218460;218461;218462;218463;218464;218465;218466	294729;294730;294731;294732;294733;294734;294735;294736;294737;294738;294739	294737			11	
LYIDSYEK	1	Unmodified	1029.5019	0.50187728	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	43.251	39.822	2	0.0034465	36422	160511_QHF_FH_JSI12i_1	72.485	72.485			0.89239	0.91944	14.301	11	0	Median	1.0361	0.87102	16.815	2	0	Median	0.83032	0.98127	18.162	3	0	Median	0.95085	0.91944	16.308	3	0	Median	0.91305	1.0404	14.248	3	0	Plateau	3881100000	1869700000	2011400000	667980000	297710000	370270000	1056600000	584600000	471970000	1204400000	548450000	655980000	952130000	438960000	513170000	35446	1460	33554	218467;218468;218469;218470;218471;218472;218473;218474;218475;218476;218477	294740;294741;294742;294743;294744;294745;294746;294747;294748;294749;294750;294751;294752;294753;294754;294755;294756	294745			17	
LYIDSYEKDVAK	2	Acetyl (K)	1484.7399	0.73987572	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			69.567	58.91	2	0.00088621	31651	160513_QHF_FH_JSI10Kac_4	84.268	69.002			0.94522	1.1283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94522	1.1283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4923800	2768600	2155200	0	0	0	4923800	2768600	2155200	0	0	0	0	0	0	35447	1460	33555	218478	294757;294758	294758	1443		2	
LYIEFVK	1	Unmodified	910.51641	0.51640513	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	67.932	66.833	2	0.043362	57788	160511_QHF_FH_JSI12i_2	45.718	25.436			1.252	1.1986	6.7613	2	0	Median	1.354	1.1427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1578	1.2573	NaN	1	0	Median	134030000	58266000	75764000	53218000	19703000	33514000	0	0	0	0	0	0	80812000	38563000	42249000	35448	2508	33556	218479;218480	294759	294759			1	
LYIGLAGLATDVQTVAQR	0	Unmodified	1888.0418	0.04181182	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32		9	8						8	7	5	7	6	98.125	95.518	2;3	1.405E-168	45940	160513_QHF_FH_JSI11Kac_6	220.85	201.1			0.92918	1.0068	23.075	24	7	Median	1.2988	1.1204	38.278	6	2	Median	0.73437	0.92321	10.933	5	2	Median	1.0057	1.0154	14.876	7	2	Median	0.86441	0.89768	20.14	6	1	Median	6673100000	3437100000	3236000000	1569800000	759720000	810090000	1249100000	719060000	530070000	2122500000	1071700000	1050900000	1731600000	886640000	845000000	35449	1672	33557	218481;218482;218483;218484;218485;218486;218487;218488;218489;218490;218491;218492;218493;218494;218495;218496;218497;218498;218499;218500;218501;218502;218503;218504;218505	294760;294761;294762;294763;294764;294765;294766;294767;294768;294769;294770;294771;294772;294773;294774;294775;294776;294777;294778;294779;294780;294781;294782;294783;294784;294785;294786;294787;294788;294789	294769			29	
LYIGNLNESVTPADLEK	1	Unmodified	1874.9626	0.96255845	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	8	6								3	4	3	4	81.056	80.433	2;3	6.5597E-52	72969	160511_QHF_FH_JSI10i_1	213.18	137.8			0.90815	0.96162	16.472	14	1	Median	1.1959	0.96585	3.9874	3	0	Plateau	0.84768	1.0346	14.387	4	1	Median	0.89086	0.8945	7.5829	3	0	Median	0.71816	0.7376	24.754	4	0	Linear	646070000	314480000	331590000	127080000	58798000	68284000	200270000	103310000	96960000	173980000	81652000	92332000	144740000	70721000	74019000	35450	5153	33558	218506;218507;218508;218509;218510;218511;218512;218513;218514;218515;218516;218517;218518;218519	294790;294791;294792;294793;294794;294795;294796;294797;294798;294799;294800;294801;294802;294803;294804;294805;294806;294807;294808;294809;294810;294811;294812;294813;294814;294815;294816;294817	294804			27	
LYIGNLSENAAPSDLESIFK	1	Unmodified	2180.1001	0.10011456	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.38	101.2	2	6.9151E-10	87064	160511_QHF_FH_JSI12i_2	122.63	110.57			0.73888	0.83182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73888	0.83182	NaN	1	0	Median	130530000	78211000	52315000	0	0	0	0	0	0	0	0	0	130530000	78211000	52315000	35451	132	33559	218520	294818	294818			1	
LYILFAAPPEK	1	Unmodified	1260.7118	0.71181048	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3	2	1	2	1	84.812	75.022	2	1.6532E-10	40990	160513_QHF_FH_JSI9Kac_6	127.3	96.73			0.90267	0.87515	14.088	6	3	Median	1.0679	0.89929	6.7523	2	1	Median	0.85526	1.0027	NaN	1	0	Median	0.90267	0.85513	6.1786	2	1	Median	0.63282	0.66868	NaN	1	1	Median	326160000	195030000	131130000	106300000	57736000	48561000	3465200	1907000	1558200	136630000	85499000	51129000	79769000	49891000	29878000	35452	2610	33560	218521;218522;218523;218524;218525;218526	294819;294820;294821;294822;294823;294824;294825;294826	294825			8	
LYILQQAR	0	Unmodified	1003.5815	0.581465	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			62.793	61.275	2	0.048325	51450	160511_QHF_FH_JSI10i_3	37.646	1.4601			0.89875	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89875	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141970000	66782000	75184000	0	0	0	141970000	66782000	75184000	0	0	0	0	0	0	35453	1599	33561	218527	294827	294827			1	
LYIMTLGCLAPYR	0	Unmodified	1569.8047	0.80474136	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	88.816	79.425	2	5.1842E-08	42624	160513_QHF_FH_JSI12Kac_6	127.52	91.56			0.73487	0.74937	40.986	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58482	0.56083	NaN	1	1	Median	0.92342	1.0013	NaN	1	0	Median	174270000	110030000	64240000	0	0	0	0	0	0	112550000	81580000	30968000	61720000	28449000	33271000	35454	4614	33562	218528;218529	294828;294829	294829			2	
LYINHTPPPLSK	1	Unmodified	1378.7609	0.76088593	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	43.62	42.778	2;3	0.0017497	37395	160511_QHF_FH_JSI11i_3	62.303	50.256			1.1168	1.1791	13.44	4	0	Median	1.7426	1.4088	NaN	1	0	Median	1.1063	1.2859	NaN	1	0	Median	1.1273	1.0714	NaN	1	0	Median	1.0595	1.0813	NaN	1	0	Median	479450000	230440000	249010000	44052000	15237000	28815000	57961000	28330000	29631000	129300000	56664000	72640000	248140000	130210000	117920000	35455	3675	33563	218530;218531;218532;218533;218534;218535	294830;294831;294832;294833;294834;294835;294836;294837;294838	294832			9	
LYIQVFLK	1	Unmodified	1022.6165	0.61645353	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.563	75.32	2	0.00056392	42469	160513_QHF_FH_JSI10Kac_6	110.61	12.154			1.1432	1.161	24.45	4	0	Median	1.0908	0.9246	NaN	1	0	Median	1.1983	1.4205	NaN	1	0	Median	1.0154	0.94889	NaN	1	0	Median	1.3789	1.4392	NaN	1	0	Median	4670100000	2267700000	2402400000	1212200000	658400000	553810000	1418900000	677650000	741210000	1455900000	705690000	750250000	583140000	225970000	357160000	35456	3562	33564	218536;218537;218538;218539	294839;294840;294841;294842;294843;294844	294843			6	
LYIVFEGEEGQDAGGLLR	0	Unmodified	1964.9844	0.98435652	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		93.672	93.224	2	7.4233E-05	81924	160511_QHF_FH_JSI11i_2	77.64	53.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35457	3290	33565	218540	294845	294845			1	
LYIVGGSDPYGQK	1	Unmodified	1395.7034	0.70343063	5754	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	1	2	54.219	51.175	2	6.8794E-05	46313	160511_QHF_FH_JSI11i_1	103.7	86.264			0.98899	0.98398	10.964	4	2	Median	NaN	NaN	NaN	0	0	Median	0.77251	0.92232	NaN	1	0	Median	1.0786	1.0194	NaN	1	0	Median	1.0086	1.0583	15.296	2	2	Median	184210000	96955000	87251000	0	0	0	54782000	34555000	20227000	65002000	32224000	32778000	64423000	30176000	34246000	35458	5754	33566	218541;218542;218543;218544	294846;294847;294848;294849;294850	294846			5	
LYIWSGR	0	Unmodified	893.47594	0.4759373	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0		By MS/MS		By matching	16	0									2		1		1	60.993	51.847	2	0.021072	28609	160513_QHF_FH_JSI10Kac_6	69.383	49.537			1.3529	1.5185	42.674	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93547	1.123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9567	2.0534	NaN	1	0	Median	113560000	61519000	52042000	0	0	0	95015000	53551000	41465000	0	0	0	18545000	7968000	10577000	35459	1743	33567	218545;218546	294851	294851			1	
LYIYHVTGQGPPSLLLSK	1	Unmodified	1985.0986	0.098598418	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	81.236	76.754	3	1.1387E-84	39047	160513_QHF_FH_JSI9Kac_6	228.46	205.45			0.90812	0.9591	13.253	8	0	Median	1.1087	0.93793	20.601	2	0	Median	0.82562	0.95991	12.713	2	0	Median	0.96576	0.91711	18.925	2	0	Median	0.93716	0.97488	15.57	2	0	Median	2387900000	1126000000	1261900000	413180000	194220000	218970000	932970000	442380000	490590000	627990000	294420000	333570000	413790000	194990000	218800000	35460	3013	33568	218547;218548;218549;218550;218551;218552;218553;218554	294852;294853;294854;294855;294856;294857;294858;294859;294860;294861;294862;294863	294857			12	
LYKDDQLLDDGK	2	Unmodified	1421.7038	0.70382456	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.65	0.56	9	13	1							3	7	6	7	35.611	34.912	2;3	0.00018516	31586	160511_QHF_FH_JSI12i_1	89.805	70.49			0.92395	0.88474	53.281	22	20	Median	0.99733	0.87186	26.098	3	2	Median	0.65618	0.76274	52.988	7	7	Median	0.92395	0.92545	32.572	6	5	Median	0.91976	0.93494	83.584	6	6	Median	1745800000	949420000	796420000	187190000	88659000	98532000	556990000	334260000	222730000	512970000	267290000	245680000	488700000	259220000	229480000	35461	2659	33569	218555;218556;218557;218558;218559;218560;218561;218562;218563;218564;218565;218566;218567;218568;218569;218570;218571;218572;218573;218574;218575;218576;218577	294864;294865;294866;294867;294868;294869;294870;294871;294872;294873;294874;294875;294876;294877;294878;294879;294880;294881;294882;294883;294884;294885;294886;294887;294888	294872			25	
LYKEELEQTYHAK	2	Acetyl (K)	1692.8359	0.83590137	1180	P20700	LMNB1	Lamin-B1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		57.325	46.478	3	1.2587E-05	25568	160513_QHF_FH_JSI11Kac_5	91.441	73.076			0.30432	0.3001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30432	0.3001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5517800	4212100	1305700	0	0	0	0	0	0	5517800	4212100	1305700	0	0	0	35462	1180	33570	218578	294889	294889	1035;1036		1	
LYKEELEQTYHAK	2	Unmodified	1650.8253	0.82533668	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	28.334	28.289	2;3	1.9539E-06	23622	160511_QHF_FH_JSI12i_3	126.95	97.457			0.94963	0.96406	80.101	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94963	0.96406	80.101	2	2	Median	179430000	72108000	107330000	0	0	0	0	0	0	0	0	0	179430000	72108000	107330000	35463	1180	33570	218579;218580;218581	294890;294891;294892	294890			3	
LYKFIEQK	2	Acetyl (K)	1109.6121	0.61209643	5217	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	61.452	50.684	2	0.0049842	25671	160513_QHF_FH_JSI10Kac_5	86.67	70.526			0.76132	0.75696	14.108	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84996	1.0031	NaN	1	0	Median	0.76132	0.75696	NaN	1	0	Median	0.80853	0.88555	NaN	1	0	Median	40881000	23149000	17732000	0	0	0	10337000	6120800	4216000	18869000	11181000	7688600	11675000	5847500	5827200	35464	5217	33571	218582;218583;218584	294893;294894;294895	294895	3337		3	
LYKMAGVEDK	2	Oxidation (M)	1168.5798	0.57981002	4588	Q9C0G6	DNAH6	Dynein heavy chain 6, axonemal	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.79	5	5	4				2	1		3	5	4	5	9.7001	7.7926	2;3	0.011784	6292	160511_QHF_FH_JSI11i_3	69.954	34.01			0.88589	0.9111	18.646	17	0	Median	1.0725	0.92549	26.479	3	0	Median	0.75393	0.89713	25.577	5	0	Median	0.96673	0.9636	16.162	4	0	Median	0.82686	0.9111	7.2544	5	0	Median	24529000000	10769000000	13760000000	2379200000	923640000	1455500000	4490400000	2095100000	2395300000	10199000000	4139000000	6060200000	7460500000	3611000000	3849400000	35465	4588	33572	218585;218586;218587;218588;218589;218590;218591;218592;218593;218594;218595;218596;218597;218598;218599;218600;218601	294896;294897;294898;294899;294900;294901;294902;294903;294904;294905;294906;294907;294908;294909;294910	294896		2496	15	
LYKPEVQLR	1	Unmodified	1144.6604	0.66044361	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.699	35.241	3	0.020533	29376	160511_QHF_FH_JSI10i_3	35.224	26.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35466	432	33573	218602	294911	294911			1	
LYLADPMK	1	Unmodified	949.49429	0.49428948	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.84	4	3	1				1	2		3	2	3	3	57.65	53.992	2	0.0049824	47659	160511_QHF_FH_JSI10i_2	67.032	55.127			0.92506	0.95512	35.33	11	0	Median	1.1135	0.92635	22.287	3	0	Median	0.84273	1.0109	8.0224	2	0	Median	0.90136	0.86621	66.379	3	0	Plateau	0.83748	0.91432	23.828	3	0	Plateau	3687200000	1759200000	1928000000	978880000	419610000	559280000	1173400000	582260000	591140000	602350000	276380000	325970000	932580000	480950000	451630000	35467	1661	33574	218603;218604;218605;218606;218607;218608;218609;218610;218611;218612;218613	294912;294913;294914;294915;294916;294917;294918;294919;294920;294921;294922;294923;294924;294925;294926;294927	294927			16	
LYLDPGLR	0	Unmodified	945.52837	0.5283668	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	55.382	54.538	2	0.0070234	47172	160511_QHF_FH_JSI11i_2	60.788	36.816			0.91795	0.9782	13.682	5	0	Median	1.1679	1.0013	NaN	1	0	Median	0.68488	0.8239	NaN	1	0	Median	0.86832	0.85512	19.017	2	0	Median	0.91795	1.0154	NaN	1	0	Median	485680000	253150000	232530000	80248000	35460000	44787000	117500000	73950000	43551000	186200000	92225000	93975000	101740000	51516000	50219000	35468	430	33575	218614;218615;218616;218617;218618	294928;294929;294930;294931	294930			4	
LYLDPGLREK	1	Unmodified	1202.6659	0.66592292	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	44.441	43.845	3	0.00064814	38540	160511_QHF_FH_JSI11i_3	56.359	45.146			1.0412	1.0378	7.9338	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0401	1.205	NaN	1	0	Median	1.1874	1.1149	NaN	1	0	Median	1.0412	1.0282	NaN	1	0	Median	384390000	170900000	213490000	0	0	0	42412000	19987000	22426000	120610000	46101000	74512000	221360000	104810000	116550000	35469	430	33576	218619;218620;218621	294932;294933;294934	294932			3	
LYLEDDDPVQAEAYINR	0	Unmodified	2022.9535	0.95345032	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	3	2	76.496	76.031	2;3	6.8765E-52	69148	160511_QHF_FH_JSI11i_1	212.59	199.6			0.94696	0.99599	15.973	6	2	Median	0.89604	0.73445	NaN	1	0	Median	0.9556	1.112	NaN	1	0	Median	0.96768	0.92735	14.552	2	1	Median	0.9892	1.0158	7.2443	2	1	Median	366850000	171390000	195460000	34050000	12564000	21486000	104950000	52734000	52213000	101340000	44663000	56673000	126510000	61430000	65085000	35470	4411	33577	218622;218623;218624;218625;218626;218627;218628;218629	294935;294936;294937;294938;294939;294940;294941;294942;294943;294944;294945;294946	294936			12	
LYLEGTGINPVPVDLHEQQLSLNQHNR	0	Unmodified	3083.5788	0.57884583	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		81.838	81.505	4	2.0237E-21	72755	160511_QHF_FH_JSI11i_3	123.65	120.96			1.1629	1.243	8.7881	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94978	1.1681	NaN	1	0	Median	1.4238	1.3227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	200970000	84919000	116050000	0	0	0	89424000	42445000	46979000	111550000	42474000	69076000	0	0	0	35471	2832	33578	218630;218631	294947;294948;294949;294950;294951	294948			5	
LYLEREEYGK	1	Unmodified	1298.6507	0.65066678	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	30.849	30.817	2;3	1.1336E-08	26034	160511_QHF_FH_JSI12i_3	147.95	115.63			1.0445	1.0425	22.301	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3804	1.3128	17.208	2	1	Median	0.89948	0.92912	0.87719	2	0	Median	1578500000	744840000	833690000	0	0	0	0	0	0	855560000	333820000	521740000	722970000	411010000	311950000	35472	1943	33579	218632;218633;218634;218635	294952;294953;294954;294955;294956	294954			5	
LYLFQAQEWLK	1	Unmodified	1437.7656	0.76563696	3338	Q86V85	GPR180	Integral membrane protein GPR180	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	90.74	81.298	2	0.0011517	43734	160513_QHF_FH_JSI12Kac_6	83.862	57.743			0.8953	0.93423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8953	0.93423	NaN	1	1	Median	36431000	21435000	14996000	0	0	0	0	0	0	0	0	0	36431000	21435000	14996000	35473	3338	33580	218636	294957	294957			1	
LYLFQYPVRPASMTYDDIPHLSAK	1	Unmodified	2824.4258	0.42582257	5050	Q9NVU0	POLR3E	DNA-directed RNA polymerase III subunit RPC5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			85.367	79.699	4	3.4119E-05	44639	160513_QHF_FH_JSI10Kac_6	86.856	73.401			0.49615	0.57141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49615	0.57141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110060000	91305000	18751000	0	0	0	110060000	91305000	18751000	0	0	0	0	0	0	35474	5050	33581	218637	294958	294958			1	
LYLHYLR	0	Unmodified	976.54944	0.54943659	709	O95613	PCNT	Pericentrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	48.82	41.047	2;3	0.00075298	21874	160513_QHF_FH_JSI9Kac_6	91.584	16.274			1.0641	1.0388	8.4189	10	1	Median	1.2526	1.0847	7.5366	3	1	Median	0.82672	0.94729	8.0174	3	0	Median	1.149	1.0844	9.881	2	0	Median	0.96559	1.013	12.122	2	0	Median	2198000000	1087100000	1110900000	439040000	198600000	240440000	1049800000	568610000	481160000	436100000	181050000	255040000	273070000	138860000	134210000	35475	709	33582	218638;218639;218640;218641;218642;218643;218644;218645;218646;218647	294959;294960;294961;294962;294963;294964;294965;294966;294967;294968;294969;294970;294971;294972;294973;294974;294975;294976;294977;294978;294979	294968			21	
LYLIFEFLSMDLK	1	Unmodified	1630.8681	0.86805312	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			102.24	99.314	2	2.2935E-12	55885	160513_QHF_FH_JSI10Kac_6	128.01	102.08			1.0121	1.2137	55.609	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0121	1.2137	55.609	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94961000	50467000	44495000	0	0	0	94961000	50467000	44495000	0	0	0	0	0	0	35476	850	33583	218648;218649	294980;294981	294981			2	
LYLIFEFLSMDLK	1	Oxidation (M)	1646.863	0.86296774	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				99.551	90.396	2	0.0051103	52136	160513_QHF_FH_JSI9Kac_6	71.555	47.484			2.0837	1.7689	NaN	1	1	Median	2.0837	1.7689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123950000	37282000	86666000	123950000	37282000	86666000	0	0	0	0	0	0	0	0	0	35477	850	33583	218650	294982	294982		366	1	
LYLIFEFLSMDLKK	2	Unmodified	1758.963	0.96301614	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		13.4	5.2			1						4	1	3	1		99.123	93.098	2;3	5.2178E-17	51101	160513_QHF_FH_JSI9Kac_6	134.06	111.84			0.67395	0.80743	23.166	5	1	Median	1.0994	0.92153	NaN	1	0	Median	0.63753	0.6794	12.069	3	1	Median	1.2344	1.1321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	684780000	321380000	363400000	203190000	83015000	120170000	423990000	213040000	210950000	57605000	25323000	32281000	0	0	0	35478	850	33584	218651;218652;218653;218654;218655	294983;294984;294985;294986;294987;294988	294986			6	
LYLIFEFLSMDLKK	2	Oxidation (M)	1774.9579	0.95793076	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			96.987	89.574	3	9.731E-05	52904	160513_QHF_FH_JSI10Kac_6	109.84	89.79			0.43554	0.43444	17.752	2	2	Median	0.58015	0.49254	NaN	1	1	Median	0.32697	0.38319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88691000	68459000	20232000	43017000	27010000	16008000	45673000	41449000	4224100	0	0	0	0	0	0	35479	850	33584	218656;218657	294989;294990	294990		366	2	
LYLILDFLR	0	Unmodified	1164.6907	0.6906811	2669;1755	Q15418;P51812;Q15349;Q9UK32	RPS6KA1;RPS6KA3;RPS6KA2;RPS6KA6	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	99.745	95.497	2	2.6273E-16	50209	160513_QHF_FH_JSI9Kac_6	161.9	131.29			0.95654	1.0856	21.98	8	0	Median	1.1766	0.97509	40.437	2	0	Median	0.93275	1.0873	0.42271	2	0	Median	1.375	1.2901	24.202	2	0	Median	0.91575	0.95215	3.312	2	0	Median	2072100000	1040600000	1031500000	462300000	253410000	208890000	686330000	350880000	335460000	439980000	185250000	254740000	483500000	251040000	232460000	35480	2669;1755	33585	218658;218659;218660;218661;218662;218663;218664;218665	294991;294992;294993;294994;294995;294996;294997;294998;294999;295000;295001;295002	294996			12	
LYLINSPVVR	0	Unmodified	1172.6917	0.69174374	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.39		4	4					2	3	3	4	2	4	69.85	65.742	2	1.5908E-07	57170	160511_QHF_FH_JSI12i_3	119.27	42.217			1.0914	1.1028	19.641	13	1	Median	1.256	1.1028	18.566	3	0	Median	0.87911	1.0674	24.122	4	0	Median	1.038	1.0193	17.022	2	0	Median	1.0275	1.1233	23.28	4	1	Median	4695900000	2168400000	2527400000	644220000	287210000	357010000	892330000	435510000	456820000	1578400000	758230000	820200000	1580900000	687480000	893390000	35481	1520	33586	218666;218667;218668;218669;218670;218671;218672;218673;218674;218675;218676;218677;218678	295003;295004;295005;295006;295007;295008;295009;295010;295011;295012;295013;295014;295015;295016;295017;295018;295019;295020;295021	295020			19	
LYLIQMIPR	0	Unmodified	1145.6631	0.66308614	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	90.711	87.373	2	0.00012089	75379	160511_QHF_FH_JSI9i_3	91.906	81.919			1.0283	0.93189	9.798	6	0	Median	1.1735	0.98789	5.471	2	0	Median	0.75309	0.84274	NaN	1	0	Median	1.0283	0.96184	7.2553	2	0	Median	0.79697	0.80458	NaN	1	0	Median	720230000	373450000	346790000	246600000	127550000	119050000	21276000	10938000	10338000	419110000	217010000	202100000	33243000	17944000	15299000	35482	4736	33587	218679;218680;218681;218682;218683;218684	295022;295023;295024;295025;295026;295027	295024			6	
LYLLTEK	1	Unmodified	878.51132	0.51131975	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.32	50.341	2	0.046038	43286	160511_QHF_FH_JSI11i_2	44.395	18.568			1.0295	1.3573	35.148	4	1	Linear	1.1723	0.97665	NaN	1	0	Median	0.4361	0.5251	NaN	1	1	Median	1.1206	1.1267	NaN	1	0	Median	0.94573	1.0527	NaN	1	0	Median	345010000	210520000	134490000	63474000	37344000	26130000	75114000	51754000	23360000	118400000	72307000	46097000	88023000	49117000	38906000	35483	1742	33588	218685;218686;218687;218688	295028;295029;295030	295028			3	
LYLNSNKLDFDGLPSGIGK	2	Unmodified	2050.0735	0.073505879	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	83.12	82.623	3	2.0904E-05	71649	160511_QHF_FH_JSI12i_3	78.661	68.912			0.92843	0.91059	18.293	3	1	Plateau	0.79011	0.65206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90055	0.8376	NaN	1	0	Median	0.93101	0.93109	NaN	1	0	Median	192320000	88797000	103520000	32500000	17425000	15075000	0	0	0	67911000	36689000	31222000	91905000	34683000	57222000	35484	2344	33589	218689;218690;218691	295031;295032;295033;295034	295033			4	
LYLNVLNR	0	Unmodified	1003.5815	0.581465	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	66.986	61.181	2	0.019842	52763	160511_QHF_FH_JSI12i_3	46.37	8.7249			1.0334	1.028	11.503	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81499	0.97912	NaN	1	0	Median	1.2607	1.2189	NaN	1	0	Median	1.0334	1.028	NaN	1	0	Median	167180000	73243000	93937000	0	0	0	41637000	22049000	19588000	22157000	10539000	11618000	103390000	40655000	62731000	35485	2299	33590	218692;218693;218694	295035;295036	295036			2	
LYLQELITITQK	1	Unmodified	1461.8443	0.84428121	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	2	4	99.578	99.457	2;3	0.00030862	87189	160511_QHF_FH_JSI11i_2	63.727	56.357			0.95598	0.9726	25.257	8	2	Median	0.93815	0.82386	NaN	1	0	Median	0.71192	0.82946	7.6579	2	1	Median	1.2684	1.2635	22.153	2	0	Median	1.1224	1.19	29.689	3	1	Plateau	102190000	50706000	51482000	12631000	4632800	7998100	19995000	10376000	9618400	36441000	18614000	17827000	33122000	17083000	16038000	35486	2997	33591	218695;218696;218697;218698;218699;218700;218701;218702;218703	295037;295038;295039;295040;295041;295042;295043;295044;295045	295041			9	
LYLSWVEWK	1	Unmodified	1222.6386	0.63864553	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.285	79.012	2	4.6413E-07	43402	160513_QHF_FH_JSI9Kac_6	135	69.747			0.88288	0.93221	11.815	4	0	Median	1.2039	1.0124	NaN	1	0	Median	0.86239	1.0059	NaN	1	0	Median	0.90385	0.86394	NaN	1	0	Median	0.75854	0.79607	NaN	1	0	Median	502060000	247120000	254940000	128560000	58832000	69729000	175400000	100950000	74453000	72809000	32843000	39966000	125290000	54492000	70796000	35487	4281	33592	218704;218705;218706;218707	295046;295047;295048;295049;295050;295051	295048			5	
LYLSWVEWKR	1	Unmodified	1378.7398	0.73975656	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			79.299	73.658	3	0.00021395	40238	160513_QHF_FH_JSI10Kac_6	72.2	52.924			0.60949	0.72104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60949	0.72104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37374000	24634000	12741000	0	0	0	37374000	24634000	12741000	0	0	0	0	0	0	35488	4281	33593	218708	295052;295053	295053			2	
LYLVDLAGSEK	1	Unmodified	1206.6496	0.64960415	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.54	1	2						2		1	1	2	1	74.607	69.048	2	0.00012126	35915	160513_QHF_FH_JSI11Kac_5	93.649	39.492			0.54515	0.5637	9.4311	4	2	Median	NaN	NaN	NaN	0	0	Median	0.47	0.58909	NaN	1	0	Median	0.54515	0.53822	0.31176	2	1	Median	0.58259	0.65631	NaN	1	1	Median	187150000	120610000	66538000	0	0	0	97444000	61841000	35603000	84904000	55645000	29259000	4803800	3127200	1676600	35489	1400	33594	218709;218710;218711;218712;218713	295054;295055;295056;295057;295058;295059;295060	295057			7	
LYLVFEFLHQDLK	1	Unmodified	1663.8974	0.89737941	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	93.226	85.229	2;3	2.0921E-09	49656	160513_QHF_FH_JSI10Kac_6	155.48	128.81			0.47839	0.49577	73.021	6	6	Median	1.0332	0.88003	132.64	2	2	Median	0.29981	0.35875	31.485	2	2	Median	0.57863	0.54838	NaN	1	1	Median	0.55838	0.58608	NaN	1	1	Median	1454400000	880270000	574170000	447080000	204340000	242740000	663690000	468890000	194800000	132210000	74406000	57806000	211460000	132630000	78827000	35490	1252	33595	218714;218715;218716;218717;218718;218719	295061;295062;295063;295064;295065;295066	295065			6	
LYLVFEFLHQDLKK	2	Unmodified	1791.9923	0.99234243	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	3		1	87.706	80.327	2;3;4	2.0375E-23	45557	160513_QHF_FH_JSI10Kac_6	156.51	132.12			0.92846	1.1215	101.34	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.63397	0.74724	64.809	2	2	Median	NaN	NaN	NaN	0	0	Median	0.14817	0.15616	NaN	1	1	Median	193250000	170970000	22279000	43396000	43396000	0	118060000	99369000	18693000	0	0	0	31795000	28208000	3586700	35491	1252	33596	218720;218721;218722;218723;218724;218725	295067;295068;295069;295070;295071;295072	295072			6	
LYLVFPHDSSALSNSFHHLQLFDQDSSNVVSR	0	Unmodified	3658.7805	0.78045876	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.228	82.51	5	3.3575E-05	46626	160513_QHF_FH_JSI10Kac_6	70.57	59.939			1.0949	1.2571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0949	1.2571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111070000	68782000	42286000	0	0	0	111070000	68782000	42286000	0	0	0	0	0	0	35492	4818	33597	218726	295073	295073			1	
LYLVFSK	1	Unmodified	868.50584	0.50584045	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	72.987	64.227	2	0.039409	33595	160513_QHF_FH_JSI12Kac_6	57.281	25.153			0.9539	1.0037	21.232	4	0	Median	1.4609	1.2688	NaN	1	0	Median	0.78925	0.93103	NaN	1	0	Median	1.1529	1.0821	NaN	1	0	Median	0.72781	0.77154	NaN	1	0	Median	1286300000	586890000	699380000	250730000	70253000	180470000	355830000	160870000	194960000	367920000	191820000	176090000	311800000	163950000	147850000	35493	1895	33598	218727;218728;218729;218730	295074	295074			1	
LYLVSDVLYNSSAK	1	Unmodified	1570.8243	0.82427405	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.98	80.197	2	0.00017455	69202	160511_QHF_FH_JSI12i_2	110.86	101.9			1.39	1.3583	9.5045	4	1	Median	1.5526	1.3545	NaN	1	1	Median	1.1145	1.3622	NaN	1	0	Median	1.6175	1.6313	NaN	1	0	Median	1.2444	1.3335	NaN	1	0	Median	181000000	84917000	96085000	48764000	21454000	27309000	32307000	16948000	15359000	59539000	24291000	35248000	40392000	22224000	18169000	35494	238	33599	218731;218732;218733;218734	295075;295076;295077;295078;295079;295080	295076			6	
LYMGLEHK	1	Unmodified	989.50044	0.50043749	4955	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			30.183	29.25	3	0.01668	25616	160511_QHF_FH_JSI10i_2	35.438	23.483			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35495	4955	33600	218735	295081	295081			1	
LYMNPYAESELK	1	Unmodified	1456.6908	0.69081704	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		59.334	58.831	2	0.00022485	51071	160511_QHF_FH_JSI11i_2	78.655	68.068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35496	3196	33601	218736	295082	295082			1	
LYMVLITTK	1	Unmodified	1080.6253	0.62530365	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	3	4	4	3	76.172	71.811	2	9.3262E-06	37450	160513_QHF_FH_JSI9Kac_6	131.06	114.86			1.0172	0.9157	42.719	14	8	Median	1.0761	0.91801	56.936	3	2	Median	0.86021	1.0369	52.294	4	3	Median	1.0533	1.0205	16.122	4	2	Median	0.77009	0.81687	38.537	3	1	Median	5743800000	3004800000	2739000000	1787600000	849360000	938270000	2500100000	1423300000	1076800000	967030000	510950000	456080000	488980000	221130000	267840000	35497	1620	33602	218737;218738;218739;218740;218741;218742;218743;218744;218745;218746;218747;218748;218749;218750	295083;295084;295085;295086;295087;295088;295089;295090;295091;295092;295093;295094;295095;295096;295097;295098;295099;295100	295095			18	
LYMVLITTK	1	Oxidation (M)	1096.6202	0.62021828	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								9	9	6	4	4	4	63.315	53.329	2	0.00015913	27111	160513_QHF_FH_JSI10Kac_5	103.56	80.135			1.0515	1.119	33.132	18	3	Median	1.5497	1.3135	44.679	6	2	Median	0.87914	1.0546	11.129	4	0	Median	1.1173	1.0752	18.667	4	0	Median	1.0535	1.1142	46.759	4	1	Median	1104600000	522660000	581950000	326490000	148380000	178110000	222870000	112940000	109920000	278300000	134930000	143370000	276950000	126410000	150550000	35498	1620	33602	218751;218752;218753;218754;218755;218756;218757;218758;218759;218760;218761;218762;218763;218764;218765;218766;218767;218768	295101;295102;295103;295104;295105;295106;295107;295108;295109;295110;295111;295112;295113;295114;295115;295116;295117;295118;295119;295120;295121;295122;295123;295124;295125	295113		1293	25	
LYMYQLFR	0	Oxidation (M)	1148.5689	0.56885141	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	70.084	60.444	2	0.023042	31714	160513_QHF_FH_JSI12Kac_6	50.039	27.953			0.94186	0.96475	15.673	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0751	1.0778	NaN	1	0	Median	0.82513	0.86354	NaN	1	0	Median	72338000	44737000	27601000	0	0	0	0	0	0	35290000	23290000	12000000	37048000	21447000	15601000	35499	1689	33603	218769;218770	295126	295126			1	
LYMYQLFR	0	Unmodified	1132.5739	0.57393679	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.132	76.539	2	0.00022728	42300	160513_QHF_FH_JSI10Kac_6	118.01	78.792			0.91881	1.0991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91881	1.0991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	428240000	208080000	220150000	0	0	0	428240000	208080000	220150000	0	0	0	0	0	0	35500	1689	33603	218771	295127;295128	295128			2	
LYNLDVFQYELYNPMALYGSVPVLLAHNPHR	0	Oxidation (M)	3661.8392	0.83915961	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	96.393	88.823	3;5	5.5982E-107	52123	160513_QHF_FH_JSI10Kac_6	226.63	211.69			1.073	1.149	26.907	4	1	Median	NaN	NaN	NaN	0	0	Median	0.96346	1.149	20.614	2	0	Median	1.0309	0.98934	NaN	1	0	Median	1.6349	1.7343	NaN	1	1	Median	1739700000	740270000	999400000	0	0	0	827270000	420180000	407090000	558820000	252850000	305970000	353580000	67238000	286340000	35501	2569	33604	218772;218773;218774;218775	295129;295130;295131;295132;295133	295132		2014	5	
LYNLDVFQYELYNPMALYGSVPVLLAHNPHR	0	Unmodified	3645.8442	0.84424499	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	97.174	88.747	3;4;5	0	50318	160513_QHF_FH_JSI9Kac_6	386.05	368.21			1.146	1.2041	7.3042	4	1	Median	1.5068	1.2646	NaN	1	0	Median	0.96503	1.1466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.146	1.1828	10.436	2	1	Median	11767000000	4177600000	7589000000	982900000	368050000	614850000	2457700000	1186700000	1271000000	0	0	0	8326000000	2622900000	5703200000	35502	2569	33604	218776;218777;218778;218779	295134;295135;295136;295137	295134			4	
LYNLFLK	1	Unmodified	909.53239	0.53238955	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2	1	1	2	1	71.716	67.504	2	0.0098491	59548	160511_QHF_FH_JSI11i_2	77.374	39.136			1.3215	0.74657	41.553	5	0	Linear	1.3215	1.1073	NaN	1	0	Median	0.66366	0.80591	NaN	1	0	Median	1.1388	1.1519	50.712	2	0	Median	1.8569	2.0091	NaN	1	0	Median	435500000	239070000	196430000	74564000	37782000	36782000	121930000	79022000	42912000	221660000	115320000	106330000	17347000	6949500	10397000	35503	4122	33605	218780;218781;218782;218783;218784	295138;295139;295140;295141	295140			4	
LYNLLLLR	0	Unmodified	1016.6383	0.6382516	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.81		4	1					1	4	3	2	2	3	83.443	78.785	2	5.1065E-16	39429	160513_QHF_FH_JSI12Kac_6	162.51	93.599			1.0069	1.0629	12.808	10	0	Median	1.3167	1.1773	3.9489	3	0	Plateau	0.78911	0.95513	11.483	2	0	Median	0.93293	0.90831	5.432	2	0	Median	1.0314	1.1021	16.738	3	0	Median	1186600000	575580000	611010000	295140000	143480000	151650000	383430000	216320000	167100000	282240000	119260000	162980000	225780000	96511000	129270000	35504	5626	33606	218785;218786;218787;218788;218789;218790;218791;218792;218793;218794	295142;295143;295144;295145;295146;295147;295148;295149;295150	295148			9	
LYNNHEIR	0	Unmodified	1057.5305	0.53049207	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	3	3	4	11.28	8.363	2;3	0.00044914	6910	160511_QHF_FH_JSI12i_3	107.9	67.792			1.0031	1.0166	15.376	11	0	Median	1.1655	0.97495	14.022	2	0	Median	0.833	0.9972	24.35	3	0	Median	0.98373	0.9496	12.057	3	0	Plateau	1.0438	1.0785	6.1788	3	0	Median	3173500000	1535100000	1638300000	321630000	134880000	186760000	508880000	256350000	252530000	647180000	311220000	335960000	1695800000	832680000	863090000	35505	423	33607	218795;218796;218797;218798;218799;218800;218801;218802;218803;218804;218805;218806	295151;295152;295153;295154;295155;295156;295157;295158;295159;295160;295161;295162;295163;295164;295165	295161			14	
LYNNITFEELGALLEIPAAK	1	Unmodified	2218.1885	0.18853564	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	1	2	3	2	100.92	97.79	2;3	1.1827E-32	53831	160513_QHF_FH_JSI10Kac_6	216.99	197.67			0.97872	0.95789	21.516	6	0	Median	1.0037	0.87093	NaN	1	0	Median	0.7323	0.9018	NaN	1	0	Median	1.01	1.0112	6.6555	2	0	Median	1.1352	1.2195	35.145	2	0	Median	1161400000	603590000	557790000	106060000	49792000	56270000	198900000	124030000	74863000	471380000	251250000	220130000	385040000	178520000	206530000	35506	4411	33608	218807;218808;218809;218810;218811;218812;218813;218814	295166;295167;295168;295169;295170;295171;295172;295173;295174;295175;295176	295176			11	
LYNPENIYLSEHGGGAGNNWASGFSQGEK	1	Unmodified	3095.4009	0.40094104	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	75.174	74.745	3;4	9.9303E-23	66938	160511_QHF_FH_JSI11i_3	121.86	115.28			0.87873	0.86511	14.7	6	1	Median	1.0751	0.92619	NaN	1	0	Median	0.71228	0.87334	31.485	2	1	Median	0.89614	0.84832	5.5325	2	0	Median	0.85539	0.84838	NaN	1	0	Median	574480000	318280000	256200000	55962000	24043000	31919000	97546000	54863000	42683000	295230000	167290000	127940000	125740000	72076000	53662000	35507	1223	33609	218815;218816;218817;218818;218819;218820	295177;295178;295179;295180;295181;295182;295183;295184;295185;295186;295187;295188;295189;295190;295191;295192;295193;295194	295180			18	
LYNSEESRPYTNK	1	Unmodified	1599.7529	0.75290002	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.479	15.479	3	0.035636	12741	160511_QHF_FH_JSI11i_3	24.558	17.519			1.4653	1.3231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4653	1.3231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47507000	21513000	25994000	0	0	0	0	0	0	47507000	21513000	25994000	0	0	0	35508	5136	33610	218821	295195	295195			1	
LYNTCAVFGPDGTLLAK	1	Unmodified	1838.9237	0.92367052	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								2	2	4	4	79.614	79.105	2;3	9.3099E-11	68461	160511_QHF_FH_JSI12i_2	102.66	86.771			0.94665	0.91848	24.867	7	4	Median	0.76022	0.61514	NaN	1	1	Median	0.82266	0.90601	1.9329	2	1	Median	1.1337	1.0852	25.282	2	1	Median	1.0308	1.1077	17.612	2	1	Median	145880000	78364000	67519000	13441000	8826000	4614600	43119000	23961000	19158000	46740000	23736000	23004000	42584000	21842000	20742000	35509	4924	33611	218822;218823;218824;218825;218826;218827;218828;218829;218830;218831;218832;218833	295196;295197;295198;295199;295200;295201;295202;295203;295204;295205;295206;295207;295208;295209;295210	295200			15	
LYNVVVDTEVTGKK	2	Unmodified	1563.8508	0.85082315	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	48.595	47.864	3	5.5997E-05	40755	160511_QHF_FH_JSI12i_3	86.641	78.917			1.5357	1.5121	23.067	5	2	Median	1.7107	1.5121	NaN	1	1	Median	0.77507	0.93461	NaN	1	0	Median	1.6588	1.5357	NaN	1	1	Median	1.5049	1.5723	9.0038	2	0	Median	277570000	110300000	167270000	30936000	11936000	19000000	56004000	32194000	23809000	46863000	18514000	28348000	143760000	47653000	96110000	35510	679	33612	218834;218835;218836;218837;218838	295211;295212;295213;295214;295215	295214			5	
LYPAAVDTIVAIMAEGK	1	Unmodified	1760.9383	0.93825795	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	2	3	6	6	101.22	98.95	2;3	3.1329E-40	89091	160511_QHF_FH_JSI12i_3	201.04	168.44			0.9959	0.99807	27.094	17	1	Median	1.1655	1.0129	2.092	2	0	Median	0.80917	0.98062	19.635	3	0	Median	1.0473	0.98853	36.638	6	1	Median	1.0051	1.0744	25.995	6	0	Median	3639600000	1640300000	1999300000	262720000	138690000	124030000	280060000	162940000	117120000	994540000	453850000	540680000	2102200000	884800000	1217400000	35511	5395	33613	218839;218840;218841;218842;218843;218844;218845;218846;218847;218848;218849;218850;218851;218852;218853;218854;218855	295216;295217;295218;295219;295220;295221;295222;295223;295224;295225;295226;295227;295228;295229;295230;295231;295232;295233;295234;295235;295236;295237;295238;295239;295240	295237			23	
LYPEGLAQLAR	0	Unmodified	1229.6768	0.67682195	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	67.715	67.067	2	0.00036171	57832	160511_QHF_FH_JSI12i_2	73.573	43.497			1.0013	0.98033	6.7894	6	2	Median	1.0877	0.95054	NaN	1	0	Median	0.79704	0.96238	NaN	1	0	Median	1.0925	1.0575	8.1046	2	1	Median	0.93153	1.0162	7.8537	2	1	Median	842470000	443940000	398530000	98618000	50436000	48182000	157420000	88139000	69286000	397000000	205710000	191300000	189430000	99657000	89770000	35512	1954	33614	218856;218857;218858;218859;218860;218861	295241;295242;295243;295244;295245;295246;295247;295248;295249;295250	295243			10	
LYPELSQYMGLSLNEEEIR	0	Unmodified	2283.1093	0.10929904	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	100.73	100.61	2;3	2.2747E-26	86467	160511_QHF_FH_JSI12i_2	205.18	179.36			1.1662	1.1703	10.326	5	2	Median	1.3841	1.1879	NaN	1	0	Median	0.84174	1.0315	NaN	1	1	Median	1.262	1.2629	10.76	2	0	Median	0.99753	1.1043	NaN	1	1	Median	508720000	245190000	263520000	37389000	13125000	24263000	31555000	18093000	13462000	337030000	155960000	181080000	102740000	58020000	44723000	35513	151	33615	218862;218863;218864;218865;218866	295251;295252;295253;295254;295255;295256	295251			6	
LYPESQGSDTAWR	0	Unmodified	1508.6896	0.68957148	2514	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	41.48	41.076	2	6.5845E-05	34982	160511_QHF_FH_JSI12i_2	74.162	63.639			0.95111	0.96469	30.727	3	1	Median	NaN	NaN	NaN	0	0	Median	0.74078	0.86967	NaN	1	1	Median	1.2273	1.2219	33.427	2	0	Median	NaN	NaN	NaN	0	0	Median	159660000	84928000	74736000	0	0	0	47109000	32478000	14631000	112560000	52451000	60105000	0	0	0	35514	2514	33616	218867;218868;218869;218870;218871	295257;295258;295259;295260;295261;295262	295258			5	
LYPGYYTR	0	Unmodified	1031.5076	0.50763136	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	36.046	35.412	2	0.0027636	30080	160511_QHF_FH_JSI12i_3	79.597	40.055			1.0669	1.072	21.021	5	3	Median	1.7644	1.4331	NaN	1	0	Median	0.74912	0.89398	NaN	1	1	Median	1.0195	0.96834	NaN	1	0	Median	1.208	1.2145	17.651	2	2	Median	838500000	345280000	493220000	78773000	27986000	50787000	92279000	53709000	38571000	208310000	90839000	117470000	459130000	172740000	286390000	35515	2194	33617	218872;218873;218874;218875;218876	295263;295264;295265;295266	295265			4	
LYPNMTAVLLHNTQLDQR	0	Unmodified	2126.0943	0.094258096	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	82.175	78.42	3	2.9259E-17	41225	160513_QHF_FH_JSI10Kac_6	137.14	107.8			0.98803	0.97857	24.292	7	0	Median	1.5159	1.2524	34.898	2	0	Median	0.79687	0.96108	3.4567	2	0	Median	0.87322	0.82506	17.777	2	0	Median	1.1398	1.167	NaN	1	0	Median	710890000	343180000	367710000	243080000	92620000	150460000	237280000	136970000	100310000	163650000	84656000	78999000	66876000	28935000	37940000	35516	3709	33618	218877;218878;218879;218880;218881;218882;218883	295267;295268;295269;295270;295271;295272;295273;295274;295275	295275			9	
LYPNMTAVLLHNTQLDQRK	1	Unmodified	2254.1892	0.18922111	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			75.928	74.498	4	0.018743	62391	160511_QHF_FH_JSI10i_3	32.858	25.054			0.44203	0.50392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44203	0.50392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13985000	10928000	3057600	0	0	0	13985000	10928000	3057600	0	0	0	0	0	0	35517	3709	33619	218884	295276	295276			1	
LYPQLSSVHQK	1	Unmodified	1298.6983	0.69828568	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	33.115	33.068	3	0.0044888	27880	160511_QHF_FH_JSI12i_3	42.095	32.907			1.3077	1.2488	36.356	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0702	0.96572	NaN	1	0	Median	1.5978	1.6149	NaN	1	0	Median	132090000	61461000	70629000	0	0	0	0	0	0	47523000	26977000	20545000	84566000	34483000	50083000	35518	3000	33620	218885;218886	295277	295277			1	
LYPTLVIR	0	Unmodified	973.59605	0.59605244	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.4	0.49		3	2							1	1	1	2	65.033	64.122	2	0.017241	55194	160511_QHF_FH_JSI12i_3	48.787	29.31			1.0087	0.98427	23.635	5	0	Median	1.0738	0.90077	NaN	1	0	Median	1.0087	1.1106	NaN	1	0	Median	0.98531	0.98427	NaN	1	0	Median	0.97475	1.0177	44.803	2	0	Median	211000000	99172000	111820000	35421000	15724000	19697000	30005000	15038000	14967000	45390000	22095000	23295000	100180000	46315000	53865000	35519	4815	33621	218887;218888;218889;218890;218891	295278;295279	295279			2	
LYPVASLFTQK	1	Unmodified	1265.702	0.70197407	3621	Q8NCN5	PDPR	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		80.873	80.202	2	0.0064072	67267	160511_QHF_FH_JSI10i_3	53.683	28.124			1.0129	0.88193	16.905	2	2	Median	1.2272	0.99391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83597	0.78257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70939000	30627000	40312000	29541000	11824000	17717000	0	0	0	41398000	18803000	22595000	0	0	0	35520	3621	33622	218892;218893;218894	295280;295281;295282	295281			3	
LYPVFFLK	1	Unmodified	1025.595	0.5949898	1821	P54277	PMS1	PMS1 protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	94.575	94.088	2	0.014896	83607	160511_QHF_FH_JSI11i_3	50.966	40.979			1.0999	1.0252	17.959	4	0	Median	1.1744	1.0041	NaN	1	0	Median	0.86333	1.0468	NaN	1	0	Median	1.03	0.99159	NaN	1	0	Median	1.3684	1.4477	NaN	1	0	Median	34016000	15917000	18099000	7783200	3161900	4621300	4989500	2433700	2555900	8089500	4603600	3486000	13153000	5717700	7435600	35521	1821	33623	218895;218896;218897;218898	295283;295284;295285	295283			3	
LYPVLLVK	1	Unmodified	943.61064	0.61063987	3295	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	74.829	73.97	2	0.0057109	64703	160511_QHF_FH_JSI11i_2	64.803	56.463			0.98685	0.97328	8.6492	4	0	Linear	1.4204	1.2447	NaN	1	0	Median	0.89926	1.096	NaN	1	0	Median	1.0216	1.0264	NaN	1	0	Median	0.95325	1.0478	NaN	1	0	Median	263480000	130240000	133240000	45813000	16388000	29425000	58151000	32401000	25750000	99258000	48915000	50343000	60263000	32537000	27725000	35522	3295	33624	218899;218900;218901;218902;218903	295286;295287	295287			2	
LYPVLQQSLVR	0	Unmodified	1314.766	0.76597131	2921	Q5RKV6	EXOSC6	Exosome complex component MTR3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	69.651	68.84	2	6.1179E-05	59621	160511_QHF_FH_JSI12i_3	93.649	86.277			1.0486	1.0574	6.4161	4	0	Median	1.302	1.0592	NaN	1	0	Median	0.96775	1.1132	NaN	1	0	Median	1.1363	1.0557	NaN	1	0	Median	0.94237	0.95522	NaN	1	0	Median	345770000	180690000	165080000	27003000	11882000	15121000	51161000	25305000	25856000	98760000	53910000	44850000	168840000	89589000	79253000	35523	2921	33625	218904;218905;218906;218907	295288;295289;295290;295291;295292;295293;295294	295294			7	
LYPWGVVEVENPEHNDFLK	1	Unmodified	2284.1164	0.11643333	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	3	2	94.762	94.528	3	2.3064E-11	83917	160511_QHF_FH_JSI10i_2	137.14	128.09			1.0304	0.97953	10.993	6	0	Median	1.0984	0.98389	NaN	1	0	Median	0.76583	0.94961	NaN	1	0	Median	1.034	1.0054	4.865	2	0	Median	1.0523	1.1147	18.908	2	0	Median	544020000	279120000	264900000	46682000	21575000	25107000	94684000	53556000	41128000	191730000	97481000	94250000	210930000	106510000	104420000	35524	2603	33626	218908;218909;218910;218911;218912;218913;218914;218915	295295;295296;295297;295298;295299;295300;295301;295302;295303;295304;295305;295306;295307;295308;295309;295310;295311;295312;295313;295314;295315;295316;295317;295318	295315			24	
LYQAGEGR	0	Unmodified	892.44028	0.44028008	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	8.5452	8.1816	2	0.0015677	6112	160511_QHF_FH_JSI12i_1	87.754	55.799			0.96705	1.0415	12.57	7	1	Median	1.324	1.1232	10.679	2	0	Median	0.824	0.9888	9.2339	2	1	Median	0.93021	0.9237	18.826	2	0	Median	0.96705	1.0147	NaN	1	0	Median	2115700000	1043400000	1072300000	437430000	175200000	262220000	705210000	382420000	322800000	741820000	364950000	376880000	231240000	120830000	110410000	35525	1170	33627	218916;218917;218918;218919;218920;218921;218922	295319;295320;295321;295322;295323;295324;295325;295326;295327;295328	295320			10	
LYQAMGYEVDTSSAIYK	1	Unmodified	1937.9081	0.90808003	5438	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	67.607	66.993	2	1.2596E-07	60675	160511_QHF_FH_JSI10i_1	99.531	77.056			1.4352	1.4455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4352	1.4455	NaN	1	0	Median	24847000	8045300	16801000	0	0	0	0	0	0	0	0	0	24847000	8045300	16801000	35526	5438	33628	218923;218924	295329;295330;295331	295331			3	
LYQECEK	1	Unmodified	968.42733	0.42733213	3852;723	O95757;Q92598	HSPA4L;HSPH1	Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa	no	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	8.5927	8.3513	2	0.014438	6027	160511_QHF_FH_JSI11i_1	66.682	49.442			3.1383	3.1484	37.065	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5038	2.4225	NaN	1	1	Median	3.9337	4.0918	NaN	1	1	Median	1082000000	265940000	816100000	0	0	0	0	0	0	522470000	157870000	364600000	559580000	108070000	451510000	35527	723;3852	33629	218925;218926	295332;295333	295332			2	
LYQECEKLK	2	Acetyl (K)	1251.6169	0.61692381	3852;723	O95757;Q92598	HSPA4L;HSPH1	Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa	no	no	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		39.622	29.825	2	0.012922	18147	160513_QHF_FH_JSI11Kac_4	59.8	49.276			0.64033	0.70058	49.749	2	0	Median	NaN	NaN	NaN	0	0	Median	0.821	0.99595	NaN	1	0	Median	0.49942	0.49282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12557000	7795800	4761200	0	0	0	4673100	2710900	1962200	7883900	5084900	2798900	0	0	0	35528	723;3852	33630	218927;218928	295334	295334	357		1	
LYQEIISYFDK	1	Unmodified	1417.7129	0.71293269	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.247	83.414	2	0.0006856	73402	160511_QHF_FH_JSI11i_2	82.417	45.723			3.3563	3.6233	14.187	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9174	4.0056	NaN	1	1	Median	2.8755	3.2774	NaN	1	1	Median	30839000	6054500	24785000	0	0	0	0	0	0	20625000	3384400	17241000	10214000	2670100	7544100	35529	4765	33631	218929;218930	295335;295336	295336			2	
LYQEMFAWK	1	Unmodified	1214.5794	0.57941609	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	2	2	1	71.009	69.253	2	2.1385E-05	59807	160511_QHF_FH_JSI12i_2	106.36	92.765			0.81045	0.92055	26.996	6	4	Median	1.2885	1.103	NaN	1	1	Median	0.62779	0.74898	14.692	2	1	Median	0.99329	1.011	44.446	2	2	Median	0.89933	1.0198	NaN	1	0	Median	683800000	328130000	355670000	55618000	27176000	28442000	135980000	76436000	59548000	360950000	168660000	192290000	131250000	55861000	75385000	35530	2517	33632	218931;218932;218933;218934;218935;218936	295337;295338;295339;295340;295341;295342	295337			6	
LYQEVEIASVDAFQGR	0	Unmodified	1823.9054	0.90537792	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		74.547	73.916	2	8.8231E-05	64852	160511_QHF_FH_JSI11i_2	92.925	70.727			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35531	3904	33633	218937	295343	295343			1	
LYQFIEPFEEK	1	Unmodified	1441.7129	0.71293269	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				79.291	78.591	2	0.0039526	69409	160511_QHF_FH_JSI9i_2	66.595	52.933			0.77051	0.65071	NaN	1	1	Median	0.77051	0.65071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26794000	14054000	12740000	26794000	14054000	12740000	0	0	0	0	0	0	0	0	0	35532	4802	33634	218938	295344	295344			1	
LYQFNPAFFQTTVTAQILLK	1	Unmodified	2342.2675	0.26745466	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		2							8	1	4	3	2	98.343	91.853	2;3	4.7864E-123	50179	160513_QHF_FH_JSI11Kac_6	318.46	285.27			0.95716	0.97838	37.248	9	1	Median	1.1787	1.0219	NaN	1	0	Median	0.83889	0.99649	34.248	3	1	Plateau	1.0347	0.99506	49.58	3	0	Plateau	0.908	0.96645	1.7357	2	0	Median	1604200000	896660000	707550000	245620000	115800000	129820000	525100000	318120000	206980000	561580000	309420000	252160000	271900000	153320000	118590000	35533	5247	33635	218939;218940;218941;218942;218943;218944;218945;218946;218947;218948	295345;295346;295347;295348;295349;295350;295351;295352;295353;295354;295355;295356;295357;295358;295359;295360	295347			16	
LYQGINQLPNVIQALEK	1	Unmodified	1940.0731	0.073111949	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	3	2	3	101.3	101.24	2;3	2.7868E-81	87927	160511_QHF_FH_JSI12i_3	294.69	236.32			0.85038	0.96937	40.941	9	1	Median	0.79312	0.67607	NaN	1	0	Median	0.71592	0.88462	54.657	3	1	Plateau	1.3886	1.3037	18.055	2	0	Median	1.0755	1.1034	37.345	3	0	Plateau	1366000000	689680000	676330000	138320000	71372000	66952000	218300000	115580000	102720000	413500000	190400000	223100000	595880000	312320000	283550000	35534	1557	33636	218949;218950;218951;218952;218953;218954;218955;218956;218957	295361;295362;295363;295364;295365;295366;295367;295368;295369;295370;295371;295372;295373	295370			13	
LYQHAVEYFLHAIK	1	Unmodified	1730.9144	0.91442646	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	3	3	2	4	83.023	79.21	3;4	6.1077E-08	38488	160513_QHF_FH_JSI9Kac_6	112.72	95.654			0.96315	0.86122	22.602	12	2	Median	1.0199	0.88733	17.097	3	1	Median	1.0207	1.1826	28.734	3	0	Median	0.96182	0.92442	39.533	2	1	Median	0.77537	0.81283	18.054	4	0	Median	795750000	418590000	377170000	385700000	200090000	185610000	178600000	87588000	91014000	50466000	25207000	25259000	180990000	105710000	75279000	35535	5432	33637	218958;218959;218960;218961;218962;218963;218964;218965;218966;218967;218968;218969	295374;295375;295376;295377;295378;295379;295380;295381;295382;295383;295384;295385;295386;295387;295388;295389;295390;295391	295380			17	
LYQHEINLFK	1	Unmodified	1303.6925	0.69247202	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.234	49.999	3	0.013179	42798	160511_QHF_FH_JSI12i_3	41.109	26.851			2.2509	2.2721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2509	2.2721	NaN	1	1	Median	176030000	32994000	143040000	0	0	0	0	0	0	0	0	0	176030000	32994000	143040000	35536	2213	33638	218970	295392	295392			1	
LYQLLTQYK	1	Unmodified	1168.6492	0.64921022	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	58.42	57.475	2	0.00079463	49730	160511_QHF_FH_JSI11i_2	85.161	64.259			0.18796	0.18824	53.628	3	2	Median	0.46314	0.38787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.18796	0.18824	NaN	1	1	Median	0.12026	0.13606	NaN	1	0	Median	287050000	226150000	60902000	73771000	48650000	25121000	0	0	0	121110000	96200000	24908000	92172000	81299000	10873000	35537	4024	33639	218971;218972;218973	295393;295394;295395	295395			3	
LYQPEYQEVSTEEQREEISGK	1	Unmodified	2541.1871	0.18709167	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	49.033	48.344	3	1.5676E-15	42210	160511_QHF_FH_JSI9i_2	137.43	129.9			1.0297	1.0005	5.5171	10	0	Median	1.1105	0.93701	4.1742	2	0	Median	0.81373	1.0005	0.1072	2	0	Median	1.0222	1.0075	1.4729	3	0	Plateau	1.0372	1.0764	6.5037	3	0	Median	3475900000	1826900000	1648900000	459920000	220760000	239160000	966710000	548750000	417970000	1049100000	559100000	489980000	1000200000	498320000	501830000	35538	5633	33640	218974;218975;218976;218977;218978;218979;218980;218981;218982;218983	295396;295397;295398;295399;295400;295401;295402;295403;295404;295405;295406;295407;295408;295409;295410;295411;295412;295413;295414;295415;295416;295417;295418;295419;295420;295421;295422;295423;295424;295425;295426;295427;295428	295419			33	
LYQPYGDSAGSLHSTSR	0	Unmodified	1837.8595	0.85949036	4864	Q9HCU4	CELSR2	Cadherin EGF LAG seven-pass G-type receptor 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		31.598	31.598	3	0.0063821	27497	160511_QHF_FH_JSI11i_3	41.422	32.139			1.1473	1.0312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1473	1.0312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34131000	17770000	16361000	0	0	0	0	0	0	34131000	17770000	16361000	0	0	0	35539	4864	33641	218984	295429	295429			1	
LYQQHGAGLFDVTR	0	Unmodified	1603.8107	0.81068967	202	O14773	TPP1	Tripeptidyl-peptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		4	10							4	5	3	2	48.51	47.562	2;3	2.4787E-10	40466	160511_QHF_FH_JSI12i_3	170.04	146.05			0.94236	0.92432	23.632	12	2	Median	1.1315	0.96482	34.379	3	0	Median	0.77227	0.92751	29.64	5	2	Median	0.96335	0.89855	0.49328	2	0	Median	0.91993	0.93681	2.3851	2	0	Median	2209700000	1069200000	1140500000	251850000	105140000	146710000	516710000	269890000	246820000	757480000	322870000	434610000	683690000	371330000	312360000	35540	202	33642	218985;218986;218987;218988;218989;218990;218991;218992;218993;218994;218995;218996;218997;218998	295430;295431;295432;295433;295434;295435;295436;295437;295438;295439;295440;295441;295442;295443;295444;295445;295446;295447;295448;295449;295450;295451;295452	295452			23	
LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD	0	Unmodified	3345.4918	0.49180624	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.633	88.193	3	3.7582E-05	78358	160511_QHF_FH_JSI9i_1	41.532	39.267			1.1438	1.1359	4.3393	4	0	Median	1.3747	1.1326	NaN	1	0	Median	0.88243	1.0507	NaN	1	0	Median	1.1979	1.1587	NaN	1	0	Median	1.0921	1.1391	NaN	1	0	Median	2771500000	1198400000	1573100000	576440000	192090000	384350000	725950000	377630000	348330000	895010000	377190000	517820000	574120000	251530000	322590000	35541	985	33643	218999;219000;219001;219002	295453;295454;295455;295456;295457;295458;295459	295459			7	
LYQSATQAVFQK	1	Unmodified	1382.7194	0.71941505	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		3	2	2	2	44.305	43.344	2	1.0498E-06	37902	160511_QHF_FH_JSI9i_2	102.06	73.144			0.90463	1.1024	26.582	7	7	Median	1.363	1.1731	NaN	1	1	Median	0.68954	0.83784	38.808	2	2	Median	1.0044	0.99024	38.654	2	2	Median	0.91167	0.97006	21.115	2	2	Median	203200000	106390000	96818000	23731000	8514500	15216000	40782000	23765000	17017000	86237000	47055000	39182000	52454000	27051000	25403000	35542	3873	33644	219003;219004;219005;219006;219007;219008;219009;219010;219011	295460;295461;295462;295463;295464;295465;295466;295467;295468	295464			9	
LYQTDPSGTYHAWK	1	Unmodified	1665.7787	0.77872084	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.95		11	9						7	7	4	7	9	42.537	39.662	2;3	1.4005E-08	21239	160513_QHF_FH_JSI11Kac_6	98.439	92.002			1.0002	1.2281	51.698	25	5	Plateau	1.172	1.0108	25.483	6	2	Median	0.94392	1.3667	14.054	4	0	Linear	1.0518	0.99358	68.422	7	1	Median	0.93208	1.0354	62.742	8	2	Median	4859800000	2227100000	2632700000	849950000	368770000	481180000	1015400000	507380000	508030000	1832800000	838260000	994510000	1161700000	512700000	649020000	35543	209	33645	219012;219013;219014;219015;219016;219017;219018;219019;219020;219021;219022;219023;219024;219025;219026;219027;219028;219029;219030;219031;219032;219033;219034;219035;219036;219037;219038	295469;295470;295471;295472;295473;295474;295475;295476;295477;295478;295479;295480;295481;295482;295483;295484;295485;295486;295487;295488;295489;295490;295491;295492;295493;295494;295495;295496;295497;295498;295499;295500;295501;295502;295503;295504;295505;295506;295507;295508;295509;295510;295511;295512;295513;295514;295515;295516;295517;295518	295484			50	
LYQTDPSGTYHAWKANAIGR	1	Acetyl (K)	2290.1131	0.11307928	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	1	0	0	1			By MS/MS		16	0									1			1		71.952	62.532	3	0.001653	33800	160513_QHF_FH_JSI11Kac_6	72.359	63.263			0.12453	0.12239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12453	0.12239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43575000	41739000	1836200	0	0	0	0	0	0	43575000	41739000	1836200	0	0	0	35544	209	33646	219039	295519	295519	113		1	
LYQTPLELK	1	Unmodified	1103.6227	0.62266112	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	53.955	53.422	2	0.014604	48172	160511_QHF_FH_JSI10i_1	45.161	16.738			1.0194	1.132	1.4974	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95565	1.144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0873	1.12	NaN	1	0	Median	221000000	105820000	115180000	0	0	0	125060000	58169000	66888000	0	0	0	95946000	47653000	48293000	35545	1790	33647	219040;219041	295520;295521	295521			2	
LYQVEYAFK	1	Unmodified	1159.5914	0.59136099	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.35	3	7	2					1	4	4	5	5	3	61.044	56.897	2	1.7622E-05	30233	160513_QHF_FH_JSI9Kac_6	129.1	81.276			1.0105	1.0356	29.327	13	5	Median	1.0806	0.92311	28.931	3	1	Median	0.86806	1.028	33.45	4	1	Median	0.90807	0.90785	33.291	4	3	Median	1.13	1.2095	2.5716	2	0	Median	3934400000	2236000000	1698400000	824780000	498570000	326220000	1201800000	668160000	533670000	1839400000	1036700000	802700000	68352000	32581000	35771000	35546	1922	33648	219042;219043;219044;219045;219046;219047;219048;219049;219050;219051;219052;219053;219054;219055;219056;219057;219058	295522;295523;295524;295525;295526;295527;295528;295529;295530;295531;295532;295533;295534;295535;295536;295537;295538;295539;295540	295538			18	
LYQYPNFAGPHAALANK	1	Unmodified	1873.9475	0.9475175	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	3.72		4	7						1	4	4	2	2	57.653	56.113	2;3	1.3886E-22	48250	160511_QHF_FH_JSI12i_3	180.97	105.67			1.0134	0.96485	16.469	11	3	Median	1.4816	1.2289	14.535	4	3	Linear	0.90174	1.0371	4.2971	3	0	Plateau	0.89099	0.83205	19.99	2	0	Median	0.81732	0.82193	4.8596	2	0	Median	3596700000	1772000000	1824800000	666460000	300690000	365770000	732200000	411540000	320670000	1003400000	458870000	544530000	1194700000	600870000	593800000	35547	4535	33649	219059;219060;219061;219062;219063;219064;219065;219066;219067;219068;219069;219070	295541;295542;295543;295544;295545;295546;295547;295548;295549;295550;295551;295552;295553;295554;295555;295556;295557;295558;295559;295560;295561;295562;295563;295564;295565	295565			25	
LYQYPNFAGPHAALANKSFFK	2	Acetyl (K)	2425.2219	0.22190145	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.767	73.453	3	0.0037784	40510	160513_QHF_FH_JSI11Kac_6	63.706	55.061			0.75141	0.71644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75141	0.71644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18290000	11379000	6911100	0	0	0	0	0	0	18290000	11379000	6911100	0	0	0	35548	4535	33650	219071	295566	295566	3182		1	
LYQYYLDHLTGVGNNSEGGR	0	Unmodified	2255.0607	0.060709361	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	65.179	64.804	3	0.00029859	57523	160511_QHF_FH_JSI11i_3	56.304	50.724			0.84708	0.85342	8.1192	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68729	0.85342	NaN	1	1	Median	0.81257	0.74337	NaN	1	1	Median	0.84708	0.8577	NaN	1	1	Median	95018000	60814000	34204000	0	0	0	28003000	18437000	9566600	32008000	19741000	12267000	35008000	22637000	12371000	35549	1581	33651	219072;219073;219074	295567;295568;295569	295567			3	
LYRETNEPVK	1	Unmodified	1247.651	0.65100113	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.11		5	9					3	4	5	6	5	5	14.487	11.434	2;3	4.4791E-13	9518	160511_QHF_FH_JSI11i_3	154.84	125.03			1.0758	1.1556	21.505	21	4	Median	1.8275	1.489	16.591	5	1	Median	0.9899	1.1787	13.075	6	1	Median	1.1247	1.0468	14.931	5	0	Median	0.99756	1.0825	30.584	5	2	Median	5377900000	2712100000	2665800000	1029200000	455000000	574180000	1645600000	806130000	839500000	2151800000	1171900000	979940000	551280000	279100000	272180000	35550	1023	33652	219075;219076;219077;219078;219079;219080;219081;219082;219083;219084;219085;219086;219087;219088;219089;219090;219091;219092;219093;219094;219095	295570;295571;295572;295573;295574;295575;295576;295577;295578;295579;295580;295581;295582;295583;295584;295585;295586;295587;295588;295589;295590;295591;295592;295593	295571			24	
LYRLPETPK	1	Unmodified	1115.6339	0.63389451	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		34.935	34.214	3	0.040532	27754	160511_QHF_FH_JSI9i_3	22.339	15.32			1.1521	1.009	12.042	2	0	Median	1.1397	0.9266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1647	1.0986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	642920000	290280000	352640000	364200000	154480000	209720000	0	0	0	278720000	135800000	142920000	0	0	0	35551	1351	33653	219096;219097	295594;295595	295595			2	
LYRPGSVAYVSR	0	Unmodified	1366.7357	0.73573382	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				40.473	31.389	3	0.013813	16857	160513_QHF_FH_JSI9Kac_6	33.195	23.683			0.72183	0.58632	NaN	1	0	Median	0.72183	0.58632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15547000	9627500	5919200	15547000	9627500	5919200	0	0	0	0	0	0	0	0	0	35552	1798	33654	219098	295596	295596			1	
LYRVEYAK	1	Unmodified	1040.5655	0.56548059	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	2	3	3	24.558	21.076	2;3	0.0015368	17609	160511_QHF_FH_JSI11i_3	103.83	72.544			0.88021	0.88123	22.263	11	0	Median	1.1213	0.88123	3.5124	3	0	Plateau	0.74584	0.86641	5.4305	2	0	Median	0.88021	0.83543	9.6771	3	0	Plateau	0.81982	0.85792	40.851	3	0	Median	4773400000	2357900000	2415500000	1616900000	642030000	974890000	964510000	536320000	428180000	1585200000	831340000	753870000	606780000	348180000	258600000	35553	939	33655	219099;219100;219101;219102;219103;219104;219105;219106;219107;219108;219109	295597;295598;295599;295600;295601;295602;295603;295604;295605;295606;295607	295599			11	
LYSEDELPAEFK	1	Unmodified	1439.682	0.68202649	5713	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	61.919	61.051	2	0.00021077	55621	160511_QHF_FH_JSI12i_1	95.483	79.15			1.3043	1.1939	24.564	2	2	Median	1.7534	1.4203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97024	1.0035	NaN	1	1	Median	301490000	104320000	197170000	174810000	40217000	134590000	0	0	0	0	0	0	126680000	64101000	62580000	35554	5713	33656	219110;219111	295608;295609	295608			2	
LYSENEGMASNQGK	1	Unmodified	1526.6671	0.66712148	4045	Q96EI5	TCEAL4	Transcription elongation factor A protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.913	18.416	2	5.3037E-08	15656	160511_QHF_FH_JSI11i_1	141.08	131.9			0.9631	1.0368	29.951	4	1	Median	0.73562	0.60001	NaN	1	1	Median	0.85212	1.0143	NaN	1	0	Median	1.0885	1.0597	NaN	1	0	Median	1.1047	1.1695	NaN	1	0	Median	227530000	105660000	121870000	54950000	28131000	26819000	60231000	30696000	29535000	52541000	21876000	30665000	59807000	24959000	34849000	35555	4045	33657	219112;219113;219114;219115	295610;295611;295612;295613;295614;295615;295616;295617	295611			8	
LYSESLAR	0	Unmodified	937.4869	0.48689592	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.33		4	2				1	3	1	4	3	2	2	27.659	22.527	2	7.6752E-05	19129	160511_QHF_FH_JSI12i_2	146.94	29.246			1.4347	1.341	28.935	10	4	Median	1.6691	1.4083	21.754	4	1	Median	1.4931	1.8127	50.477	2	1	Median	1.2407	1.2408	18.844	2	1	Median	1.3555	1.4866	41.155	2	1	Median	5651700000	2652700000	2999000000	1150600000	400000000	750600000	1008400000	510870000	497510000	2197800000	1067700000	1130100000	1294900000	674130000	620760000	35556	1702;1368	33658	219116;219117;219118;219119;219120;219121;219122;219123;219124;219125;219126	295618;295619;295620;295621;295622;295623;295624;295625;295626;295627;295628;295629;295630	295619			13	
LYSFLLNDSPLNPLLASFFSK	1	Unmodified	2385.262	0.26203493	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.97	94.099	2;3	0	56136	160513_QHF_FH_JSI10Kac_6	367.73	298.28			1.0005	1.2049	56.522	3	0	Plateau	0.50815	0.43291	NaN	1	0	Median	0.96072	1.1482	6.8188	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	639030000	313900000	325130000	92094000	56617000	35477000	546940000	257280000	289660000	0	0	0	0	0	0	35557	2887	33659	219127;219128;219129	295631;295632;295633;295634;295635	295633			5	
LYSFYDLESNINK	1	Unmodified	1604.7722	0.77223848	4763	Q9H7B4	SMYD3	Histone-lysine N-methyltransferase SMYD3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.147	79.994	2	0.016679	69090	160511_QHF_FH_JSI12i_2	50.95	35.086			3.7846	4.1495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7846	4.1495	NaN	1	1	Median	27303000	6969500	20334000	0	0	0	0	0	0	0	0	0	27303000	6969500	20334000	35558	4763	33660	219130	295636	295636			1	
LYSIGGHGNFSPGFK	1	Unmodified	1579.7783	0.77832691	5045	Q9NVR0	KLHL11	Kelch-like protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	54.802	53.963	3	5.1034E-05	44248	160511_QHF_FH_JSI9i_3	81.311	65.771			0.82284	0.79449	11.075	4	1	Median	1.0387	0.8307	NaN	1	0	Median	0.8283	0.95703	NaN	1	0	Median	0.81743	0.75986	NaN	1	0	Median	0.73561	0.75437	NaN	1	1	Median	273260000	132800000	140460000	58555000	26144000	32412000	70837000	37596000	33241000	77825000	38055000	39770000	66040000	31004000	35037000	35559	5045	33661	219131;219132;219133;219134	295637;295638;295639;295640;295641;295642	295640			5	
LYSILGTTLK	1	Unmodified	1107.654	0.65396125	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	5	3	3	3	74.344	69.8	2	2.546E-09	61545	160511_QHF_FH_JSI12i_3	128.36	85.238			1.0103	1.1016	27.562	14	4	Median	1.33	1.1157	42.801	5	3	Median	0.89388	1.0878	18.901	3	1	Median	1.1084	1.0655	11.19	3	0	Median	1.2423	1.3088	20.486	3	0	Plateau	2933500000	1329300000	1604200000	682720000	282010000	400710000	469370000	238670000	230700000	931030000	414500000	516540000	850380000	394130000	456250000	35560	472	33662	219135;219136;219137;219138;219139;219140;219141;219142;219143;219144;219145;219146;219147;219148	295643;295644;295645;295646;295647;295648;295649;295650;295651;295652;295653;295654;295655;295656;295657;295658;295659;295660;295661;295662;295663;295664;295665	295664			23	
LYSILQGDSPTK	1	Unmodified	1320.6925	0.6925316	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.65	3	3					1	1		2	1	3	2	55.264	51.992	2	1.406E-05	44978	160511_QHF_FH_JSI11i_2	127.51	107.21			0.82355	0.81858	19.666	8	6	Median	0.74966	0.62046	8.2419	2	1	Median	0.62765	0.72166	NaN	1	1	Median	0.97443	0.96497	4.5705	3	2	Plateau	0.79544	0.85655	19.132	2	2	Median	607380000	340220000	267170000	88549000	48721000	39828000	116730000	72714000	44012000	236390000	126670000	109720000	165720000	92105000	73611000	35561	238	33663	219149;219150;219151;219152;219153;219154;219155;219156	295666;295667;295668;295669;295670;295671;295672;295673	295673			8	
LYSLALHPNAFK	1	Unmodified	1372.7503	0.75032125	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	2	2	4	2	60.224	59.395	2;3	2.4961E-07	48891	160511_QHF_FH_JSI9i_3	130.66	119.29			0.8536	0.83596	17.989	8	3	Median	1.2825	1.0369	6.0266	2	0	Median	0.60928	0.69896	10.849	2	1	Median	0.81709	0.76479	3.0666	2	1	Median	0.93691	0.95036	8.6239	2	1	Median	2642800000	1326000000	1316800000	544030000	245180000	298850000	437920000	251700000	186220000	795720000	411950000	383780000	865180000	417220000	447970000	35562	2094	33664	219157;219158;219159;219160;219161;219162;219163;219164;219165;219166	295674;295675;295676;295677;295678;295679;295680;295681;295682;295683;295684;295685;295686;295687;295688;295689	295685			16	
LYSLALHPNAFKR	1	Unmodified	1528.8514	0.85143227	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	59.624	50.496	3;4	0.0005928	27667	160513_QHF_FH_JSI10Kac_6	61.11	54.424			1.0162	1.0393	78.491	5	0	Median	1.224	1.0393	NaN	1	0	Median	0.90567	1.0521	18.572	2	0	Median	0.18807	0.18614	NaN	1	0	Median	1.0196	1.108	NaN	1	0	Median	221830000	118410000	103420000	42856000	17350000	25506000	119030000	66427000	52602000	38212000	23977000	14235000	21737000	10658000	11079000	35563	2094	33665	219167;219168;219169;219170;219171	295690;295691;295692;295693;295694;295695;295696	295696			7	
LYSLDPEQK	1	Unmodified	1091.5499	0.5498901	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.404	37.785	2	0.014846	33785	160511_QHF_FH_JSI10i_1	54.712	28.444			0.9083	0.97391	10.611	4	0	Median	1.196	0.97585	NaN	1	0	Median	0.83899	0.97198	NaN	1	0	Median	0.81071	0.79656	NaN	1	0	Median	0.98335	1.002	NaN	1	0	Median	650620000	384920000	265700000	126100000	50642000	75456000	199850000	129950000	69907000	191810000	128210000	63603000	132860000	76119000	56738000	35564	107	33666	219172;219173;219174;219175	295697;295698	295698			2	
LYSLFLK	1	Unmodified	882.52149	0.52149051	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	3	2	2	3	71.707	68.289	2	0.018889	57592	160511_QHF_FH_JSI10i_3	59.205	47.3			0.99473	0.99784	9.1711	10	0	Median	1.2656	1.0545	9.5445	3	0	Median	0.90919	1.0691	8.6697	2	0	Median	0.93333	0.91562	1.9366	2	0	Median	0.91527	0.99018	10.829	3	0	Median	1140700000	521110000	619580000	286880000	139110000	147770000	247820000	104000000	143820000	239320000	115090000	124230000	366670000	162910000	203760000	35565	5223	33667	219176;219177;219178;219179;219180;219181;219182;219183;219184;219185	295699;295700;295701;295702;295703;295704;295705;295706;295707;295708	295700			10	
LYSLGNGR	0	Unmodified	878.46102	0.46101552	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By matching			By MS/MS	2.5	0.5		1	1							1			1	22.346	21.85	2	0.059207	17900	160511_QHF_FH_JSI12i_3	35.249	20.836			1.269	1.1816	17.918	2	0	Median	1.2099	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3309	1.3412	NaN	1	0	Median	124990000	58260000	66727000	44331000	21632000	22699000	0	0	0	0	0	0	80657000	36629000	44028000	35566	933	33668	219186;219187	295709	295709			1	
LYSLLFR	0	Unmodified	910.52764	0.52763852	5266	Q9UDW1	UQCR10	Cytochrome b-c1 complex subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.121	67.689	2	7.2104E-05	37373	160513_QHF_FH_JSI10Kac_6	123.1	29.213			0.96494	1.0077	8.6686	4	0	Median	1.2022	1.0096	NaN	1	0	Median	0.86473	1.037	NaN	1	0	Median	1.0768	1.0058	NaN	1	0	Median	0.7985	0.85728	NaN	1	0	Median	981520000	542470000	439040000	184640000	80944000	103700000	457080000	287030000	170050000	185610000	90398000	95217000	154180000	84101000	70078000	35567	5266	33669	219188;219189;219190;219191	295710;295711;295712;295713;295714;295715	295714			6	
LYSLPNPSVLVSLR	0	Unmodified	1556.8926	0.89262839	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.139	99.158	2	0.0080484	85937	160511_QHF_FH_JSI12i_3	58.978	48.148			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35568	4181	33670	219192	295716	295716			1	
LYSLSLLSLTPSR	0	Unmodified	1448.8239	0.82388012	237	O15037	KHNYN	Protein KHNYN	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		86.647	80.929	2	2.1039E-16	45544	160513_QHF_FH_JSI10Kac_6	137.89	99.602			1.113	1.3118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.113	1.3118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36528000	16874000	19654000	0	0	0	36528000	16874000	19654000	0	0	0	0	0	0	35569	237	33671	219193;219194	295717;295718	295718			2	
LYSLSVLYK	1	Unmodified	1084.6168	0.61684746	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	76.179	67.744	2	0.0047559	37422	160513_QHF_FH_JSI10Kac_6	68.224	32.928			1.1177	1.2013	26.419	4	0	Median	1.1053	0.93875	NaN	1	0	Median	1.0106	1.1989	NaN	1	0	Median	1.8639	1.7783	NaN	1	0	Median	1.1303	1.2038	NaN	1	0	Median	369820000	165270000	204550000	95090000	49680000	45411000	164130000	72459000	91676000	65441000	24715000	40726000	45151000	18414000	26737000	35570	295	33672	219195;219196;219197;219198	295719;295720;295721	295721			3	
LYSPSQIGAFVLMK	1	Oxidation (M)	1568.8273	0.82725094	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.12		10	14					3	8	9	11	9	6	88.608	85.085	2;3	1.2824E-14	73278	160511_QHF_FH_JSI9i_3	162.26	144.79			0.96356	0.96882	15.974	31	5	Median	1.1446	0.96081	17.684	8	1	Median	0.80109	0.9526	13.896	9	2	Median	0.94559	0.92435	18.516	8	2	Median	0.98891	1.0488	15.571	6	0	Median	5391300000	2772300000	2619000000	1264800000	583040000	681800000	1079200000	595190000	484050000	1739600000	948510000	791110000	1307600000	645600000	662010000	35571	1480	33673	219199;219200;219201;219202;219203;219204;219205;219206;219207;219208;219209;219210;219211;219212;219213;219214;219215;219216;219217;219218;219219;219220;219221;219222;219223;219224;219225;219226;219227;219228;219229;219230;219231;219232;219233	295722;295723;295724;295725;295726;295727;295728;295729;295730;295731;295732;295733;295734;295735;295736;295737;295738;295739;295740;295741;295742;295743;295744;295745;295746;295747;295748;295749;295750;295751;295752;295753;295754;295755;295756;295757;295758;295759;295760;295761;295762;295763;295764;295765;295766;295767;295768;295769;295770;295771;295772;295773;295774;295775;295776;295777;295778;295779;295780;295781;295782;295783;295784;295785;295786;295787;295788;295789;295790;295791;295792;295793;295794;295795;295796;295797;295798;295799	295757		1154	78	
LYSPSQIGAFVLMK	1	Unmodified	1552.8323	0.83233632	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.27	4	8	8						8	6	7	8	7	95.344	92.86	2;3	2.7685E-41	81347	160511_QHF_FH_JSI10i_3	232.14	208.71			1.0948	1.0961	10.291	28	1	Median	1.2804	1.0627	5.7881	6	0	Median	0.88499	1.0577	8.9357	7	0	Median	1.2222	1.1553	13.07	8	1	Median	1.0599	1.1124	9.8559	7	0	Median	26420000000	12357000000	14063000000	5078300000	1963500000	3114700000	5756100000	3103000000	2653100000	8910100000	3877400000	5032700000	6675700000	3413100000	3262600000	35572	1480	33673	219234;219235;219236;219237;219238;219239;219240;219241;219242;219243;219244;219245;219246;219247;219248;219249;219250;219251;219252;219253;219254;219255;219256;219257;219258;219259;219260;219261	295800;295801;295802;295803;295804;295805;295806;295807;295808;295809;295810;295811;295812;295813;295814;295815;295816;295817;295818;295819;295820;295821;295822;295823;295824;295825;295826;295827;295828;295829;295830;295831;295832;295833;295834;295835;295836;295837;295838;295839;295840;295841;295842;295843;295844;295845;295846;295847;295848;295849;295850;295851;295852;295853;295854;295855;295856;295857;295858;295859;295860;295861;295862;295863;295864;295865;295866;295867;295868;295869;295870;295871;295872;295873;295874;295875;295876;295877;295878;295879	295822			80	
LYSPSQIGAFVLMKMK	2	Acetyl (K)	1853.9783	0.97834863	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		97.152	87.746	3	0.0016877	50028	160513_QHF_FH_JSI11Kac_6	65.225	53.964			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35573	1480	33674	219262	295880	295880	1478		1	
LYSSIDHESSTWIIK	1	Unmodified	1777.8887	0.88866522	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.69		11							6	5	4	4	4	65.888	61.729	2;3	5.1841E-08	53870	160511_QHF_FH_JSI11i_2	99.215	83.326			1.0109	0.86879	21.566	9	3	Median	1.1021	0.94295	28.972	3	2	Median	0.69701	0.86879	NaN	1	0	Median	0.83375	0.83257	21.054	3	1	Median	0.86266	0.9505	20.68	2	0	Median	875600000	428630000	446970000	220670000	104120000	116550000	169750000	94770000	74977000	320140000	144230000	175910000	165050000	85510000	79538000	35574	4225	33675	219263;219264;219265;219266;219267;219268;219269;219270;219271;219272;219273;219274;219275;219276;219277;219278;219279	295881;295882;295883;295884;295885;295886;295887;295888;295889;295890;295891;295892;295893;295894;295895;295896;295897;295898;295899;295900	295892			20	
LYSTWIGGSILASLDTFK	1	Unmodified	1971.0353	0.035329459	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.939	89.519	2;3	3.648E-70	48617	160513_QHF_FH_JSI12Kac_6	260.19	229.37			0.92576	0.92321	18.427	8	0	Median	1.178	0.98984	13.141	2	0	Median	0.73285	0.85674	23.037	2	0	Median	1.0079	0.94824	0.49518	2	0	Median	0.64079	0.68213	3.6096	2	0	Median	1365300000	717240000	648010000	301350000	134900000	166460000	356120000	196610000	159520000	369570000	182300000	187280000	338210000	203440000	134770000	35575	1524;1941	33676	219280;219281;219282;219283;219284;219285;219286;219287	295901;295902;295903;295904;295905;295906;295907;295908;295909;295910;295911;295912;295913;295914	295909			14	
LYSTWIGGSILASLDTFKK	2	Unmodified	2099.1303	0.13029248	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	96.83	90.115	3	9.7369E-35	51376	160513_QHF_FH_JSI10Kac_6	172.23	162.95			0.90551	0.96697	30.451	5	1	Median	1.3378	1.1601	NaN	1	0	Median	0.80846	0.96697	NaN	1	0	Median	0.85052	0.81147	53.138	2	1	Median	0.90551	0.96044	NaN	1	0	Median	1817900000	924920000	893000000	355980000	154160000	201820000	561810000	339030000	222790000	568430000	273710000	294720000	331700000	158020000	173670000	35576	1524;1941	33677	219288;219289;219290;219291;219292	295915;295916;295917;295918;295919;295920;295921;295922	295922			8	
LYSVSYLLK	1	Unmodified	1084.6168	0.61684746	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.67	1	4	3					3	4	4	4	5	2	74.936	70.144	2	3.9238E-05	37321	160513_QHF_FH_JSI11Kac_6	123.98	58.945			1.0954	1.0506	13.727	15	0	Median	1.3048	1.1036	13.657	4	0	Median	0.93097	1.0921	14.449	4	0	Median	1.0964	1.0416	17.18	5	0	Median	0.92109	0.99237	8.0639	2	0	Median	10080000000	4676600000	5403200000	2431400000	991110000	1440300000	3042900000	1399200000	1643700000	3285200000	1654300000	1630800000	1320300000	631910000	688410000	35577	1192	33678	219293;219294;219295;219296;219297;219298;219299;219300;219301;219302;219303;219304;219305;219306;219307	295923;295924;295925;295926;295927;295928;295929;295930;295931;295932;295933;295934;295935;295936;295937;295938;295939;295940;295941;295942;295943;295944;295945;295946;295947;295948;295949	295930			27	
LYSVVFQEICNRYDK	1	Unmodified	1932.9404	0.94038322	2274	Q08623	HDHD1	Pseudouridine-5'-phosphatase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			76.336	70.086	3	0.0011239	38233	160513_QHF_FH_JSI10Kac_6	80.411	63.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35578	2274	33679	219308	295950	295950			1	
LYSVVSQLIR	0	Unmodified	1176.6867	0.68665836	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	78.735	69.293	2	0.01461	36590	160513_QHF_FH_JSI12Kac_6	62.558	34.159			0.59154	0.63905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59154	0.63905	NaN	1	1	Median	24651000	16613000	8038000	0	0	0	0	0	0	0	0	0	24651000	16613000	8038000	35579	3921	33680	219309;219310	295951;295952	295952			2	
LYTDFDEIRQEIENETER	0	Unmodified	2299.0604	0.06043459	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	3	1	92.085	91.803	3	2.3684E-07	81808	160511_QHF_FH_JSI11i_3	118.53	100.47			0.99158	1.0124	4.2353	6	3	Median	1.2055	1.0371	NaN	1	0	Median	0.86313	1.0391	6.7804	2	2	Median	1.0076	0.98093	1.273	2	0	Median	1.0172	1.0349	NaN	1	1	Median	716400000	380890000	335520000	44602000	24921000	19682000	296750000	162590000	134160000	256460000	127700000	128760000	118590000	65679000	52910000	35580	133	33681	219311;219312;219313;219314;219315;219316;219317	295953;295954;295955;295956;295957;295958;295959;295960;295961	295954			9	
LYTEGYQVPPGATYTAIEAPK	1	Unmodified	2268.1314	0.13141469	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	71.819	71.114	3	0.002222	65034	160511_QHF_FH_JSI12i_1	44.341	37.905			0.58419	0.4781	64.505	3	3	Plateau	0.58419	0.4781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.2354	48.099	2	2	Median	180250000	86755000	93498000	90516000	49386000	41131000	0	0	0	0	0	0	89737000	37370000	52368000	35581	497	33682	219318;219319;219320	295962;295963;295964	295963			3	
LYTEKAYK	2	Acetyl (K)	1056.5492	0.54916182	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		35.575	26.153	2	0.0061707	16175	160513_QHF_FH_JSI11Kac_4	83.265	45.131			0.6029	0.65058	53.357	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80597	0.94877	NaN	1	0	Median	0.45099	0.44612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38562000	24498000	14063000	0	0	0	12464000	7179100	5285100	26097000	17319000	8778400	0	0	0	35582	300	33683	219321;219322	295965	295965	160		1	
LYTEKAYK	2	Unmodified	1014.5386	0.53859714	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.4814	8.5791	3	0.052267	5931	160511_QHF_FH_JSI12i_3	22.74	19.192			36.388	36.569	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36.388	36.569	NaN	1	0	Median	804560000	17191000	787370000	0	0	0	0	0	0	0	0	0	804560000	17191000	787370000	35583	300	33683	219323	295966	295966			1	
LYTGPGLAIHCMQVHK	1	Unmodified	1823.9175	0.9174797	353	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	52.016	51.276	3;4	5.6716E-06	45134	160511_QHF_FH_JSI11i_3	106.42	102.03			0.76299	0.77508	27.429	7	2	Median	0.51939	0.4265	NaN	1	1	Median	0.70265	0.80723	9.8147	2	1	Median	0.71549	0.67095	20.403	2	0	Median	0.82043	0.88906	2.9946	2	0	Median	797730000	482980000	314750000	67062000	42511000	24552000	199340000	115100000	84240000	295310000	182210000	113100000	236020000	143160000	92858000	35584	353	33684	219324;219325;219326;219327;219328;219329;219330	295967;295968;295969;295970;295971;295972;295973;295974;295975	295970			9	
LYTHSYLGFGLK	1	Unmodified	1397.7343	0.73433683	509	O75356	ENTPD5	Ectonucleoside triphosphate diphosphohydrolase 5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				68.984	60.275	3	0.023228	32063	160513_QHF_FH_JSI9Kac_6	36.284	28.504			0.41257	0.34878	NaN	1	1	Median	0.41257	0.34878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4967000	4028100	938880	4967000	4028100	938880	0	0	0	0	0	0	0	0	0	35585	509	33685	219331	295976	295976			1	
LYTLEEHLSNEMQAK	1	Unmodified	1804.8665	0.86654957	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	55.543	54.61	2	1.1516E-11	47252	160511_QHF_FH_JSI11i_2	109.6	91.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35586	475	33686	219332;219333;219334;219335;219336	295977;295978;295979;295980;295981	295980			5	
LYTLFYVHGSK	1	Unmodified	1326.6972	0.69722304	4689	Q9H3C7	GGNBP2	Gametogenetin-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	66.962	57.885	2;3	4.0463E-07	31676	160513_QHF_FH_JSI10Kac_6	111.06	81.247			0.92948	1.0327	10.672	8	1	Median	1.2895	1.089	5.3856	2	0	Median	0.7902	0.94412	14.088	2	0	Median	0.97738	0.93342	16.207	2	0	Median	0.92948	1.0018	2.8816	2	1	Median	810120000	454410000	355720000	189750000	98258000	91497000	296700000	176550000	120150000	214780000	118610000	96172000	108890000	60991000	47901000	35587	4689	33687	219337;219338;219339;219340;219341;219342;219343;219344	295982;295983;295984;295985;295986;295987;295988;295989;295990;295991;295992;295993;295994;295995;295996	295993			15	
LYTLQDK	1	Unmodified	879.47018	0.47018322	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.79	4	4	2				1	1		3	2	4	3	26.962	24.811	2	0.0094456	21603	160511_QHF_FH_JSI11i_1	79.116	22.606			0.91053	0.97932	30.615	12	2	Median	1.5004	1.2376	18.381	3	1	Median	0.86422	1.0376	11.243	2	0	Median	0.9714	0.93758	48.567	4	1	Median	0.77895	0.88843	4.6651	3	0	Plateau	6039800000	2886400000	3153400000	1356500000	484850000	871620000	1483600000	702490000	781120000	1779100000	952550000	826590000	1420600000	746520000	674060000	35588	1650	33688	219345;219346;219347;219348;219349;219350;219351;219352;219353;219354;219355;219356	295997;295998;295999;296000;296001;296002;296003;296004;296005;296006;296007;296008;296009	295998			13	
LYTLVLTDPDAPSR	0	Unmodified	1559.8195	0.81952302	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.36	4	6	2				2	6		5	4	5	6	74.617	69.802	2;3	9.4525E-13	62499	160511_QHF_FH_JSI11i_2	148.28	132.03			0.92447	0.98408	21.091	17	6	Median	1.1842	1.0344	22.057	5	2	Median	0.66899	0.78352	14.98	3	1	Plateau	0.98945	0.98408	7.6998	3	0	Median	0.90394	1.0024	29.217	6	3	Median	1697200000	860050000	837120000	303030000	134890000	168140000	457590000	265650000	191940000	475060000	215230000	259820000	461500000	244280000	217220000	35589	1343	33689	219357;219358;219359;219360;219361;219362;219363;219364;219365;219366;219367;219368;219369;219370;219371;219372;219373;219374;219375;219376	296010;296011;296012;296013;296014;296015;296016;296017;296018;296019;296020;296021;296022;296023;296024;296025;296026;296027;296028;296029;296030;296031;296032;296033;296034;296035;296036;296037;296038	296030			29	
LYTLVLTDPDAPSRK	1	Unmodified	1687.9145	0.91448604	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.6	1	10	8					7	9	8	12	7	8	64.929	60.093	2;3	1.2095E-159	53281	160511_QHF_FH_JSI11i_3	303.2	269.32			0.95381	0.98654	23.154	31	4	Median	1.1672	1.0004	24.96	8	0	Median	0.88497	1.0141	19.328	10	2	Median	0.93499	0.89004	27.037	7	0	Median	0.85433	0.93618	11.662	6	2	Median	16399000000	7935200000	8463600000	2023700000	925410000	1098300000	3849100000	2005400000	1843700000	6699500000	3051700000	3647800000	3826500000	1952800000	1873700000	35590	1343	33690	219377;219378;219379;219380;219381;219382;219383;219384;219385;219386;219387;219388;219389;219390;219391;219392;219393;219394;219395;219396;219397;219398;219399;219400;219401;219402;219403;219404;219405;219406;219407;219408;219409;219410;219411	296039;296040;296041;296042;296043;296044;296045;296046;296047;296048;296049;296050;296051;296052;296053;296054;296055;296056;296057;296058;296059;296060;296061;296062;296063;296064;296065;296066;296067;296068;296069;296070;296071;296072;296073;296074;296075;296076;296077;296078;296079;296080;296081;296082;296083;296084;296085;296086;296087;296088;296089;296090;296091;296092;296093;296094;296095;296096;296097;296098;296099;296100;296101;296102;296103;296104;296105;296106;296107;296108;296109;296110;296111;296112;296113;296114;296115;296116	296048			78	
LYTLVLTDPDAPSRKDPK	2	Unmodified	2028.0892	0.089155943	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		55.455	54.286	3;4	0.0017635	44563	160511_QHF_FH_JSI9i_3	38.093	28.678			0.67128	1.2259	38.052	3	0	Plateau	1.5062	1.2259	NaN	1	0	Median	1.0964	1.2535	NaN	1	0	Median	0.67128	0.64148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	179220000	87401000	91819000	47658000	15197000	32461000	48876000	20988000	27887000	82686000	51215000	31471000	0	0	0	35591	1343	33691	219412;219413;219414;219415	296117;296118;296119;296120;296121;296122	296120			6	
LYTLVLVLQPQR	0	Unmodified	1441.8657	0.86568536	1458	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	3	3	2	1	88.394	81.862	2;3	4.0351E-24	44986	160513_QHF_FH_JSI10Kac_6	200.05	172.93			0.95852	0.90727	21.649	9	2	Median	1.1072	0.93747	15.357	3	1	Median	0.76735	0.90435	33.955	3	1	Plateau	0.90855	0.86497	3.8565	2	0	Median	1.0878	1.1545	NaN	1	0	Median	1019700000	496470000	523250000	252210000	119940000	132270000	420450000	217620000	202830000	215570000	101740000	113830000	131490000	57168000	74320000	35592	1458	33692	219416;219417;219418;219419;219420;219421;219422;219423;219424	296123;296124;296125;296126;296127;296128;296129;296130;296131;296132;296133;296134;296135	296132			13	
LYTLVTYVPVTTFK	1	Unmodified	1643.9174	0.91744615	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.71	7	11	6	1				6	11	9	10	11	12	94.294	90.506	2;3	1.9073E-96	44044	160513_QHF_FH_JSI9Kac_6	248.42	206.09			1.0577	1.0591	23.674	40	11	Median	1.3594	1.2248	26.331	9	2	Median	0.84085	0.98488	18.585	9	0	Median	1.0713	1.0934	29.026	11	5	Median	1.0512	1.0844	17.307	11	4	Median	104420000000	48887000000	55535000000	16180000000	6174900000	10005000000	17352000000	8289700000	9061900000	40612000000	19591000000	21021000000	30278000000	14832000000	15447000000	35593	2035	33693	219425;219426;219427;219428;219429;219430;219431;219432;219433;219434;219435;219436;219437;219438;219439;219440;219441;219442;219443;219444;219445;219446;219447;219448;219449;219450;219451;219452;219453;219454;219455;219456;219457;219458;219459;219460;219461;219462;219463;219464;219465;219466	296136;296137;296138;296139;296140;296141;296142;296143;296144;296145;296146;296147;296148;296149;296150;296151;296152;296153;296154;296155;296156;296157;296158;296159;296160;296161;296162;296163;296164;296165;296166;296167;296168;296169;296170;296171;296172;296173;296174;296175;296176;296177;296178;296179;296180;296181;296182;296183;296184;296185;296186;296187;296188;296189;296190;296191;296192;296193;296194;296195;296196;296197;296198;296199;296200;296201;296202;296203;296204;296205;296206;296207;296208;296209;296210;296211;296212;296213;296214;296215;296216;296217;296218	296204			83	
LYTQGYISYPR	0	Unmodified	1359.6823	0.68230126	745;2422	O95985;Q13472	TOP3B;TOP3A	DNA topoisomerase 3-beta-1;DNA topoisomerase 3-alpha	no	no	0	0	0	0	By MS/MS				16	0									1	1				59.677	50.553	2	0.022828	26895	160513_QHF_FH_JSI9Kac_6	55.567	45.614			2.2876	1.9587	NaN	1	1	Median	2.2876	1.9587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7683100	1706100	5977000	7683100	1706100	5977000	0	0	0	0	0	0	0	0	0	35594	745;2422	33694	219467	296219	296219			1	
LYTSAPNTSQGK	1	Unmodified	1265.6252	0.62518031	2914	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	17.196	16.738	2	0.0069522	14253	160511_QHF_FH_JSI12i_1	51.762	18.87			0.72107	0.73866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72107	0.73866	NaN	1	0	Median	24258000	15020000	9237600	0	0	0	0	0	0	0	0	0	24258000	15020000	9237600	35595	2914	33695	219468;219469	296220;296221	296221			2	
LYTTMPVAK	1	Unmodified	1022.5471	0.54705333	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							4	2	2	1	39.306	38.472	2	0.00020645	34558	160511_QHF_FH_JSI11i_1	85.064	36.56			1.1489	1.1207	36.307	9	3	Median	1.3339	1.0689	54.482	4	2	Median	0.86767	1.0415	10.36	2	0	Median	1.2142	1.1948	6.7254	2	1	Median	1.0158	1.0701	NaN	1	0	Median	1804400000	931890000	872530000	512600000	254210000	258390000	441000000	236120000	204880000	553200000	285770000	267430000	297620000	155790000	141840000	35596	5494	33696	219470;219471;219472;219473;219474;219475;219476;219477;219478	296222;296223;296224;296225;296226;296227;296228;296229;296230;296231;296232;296233;296234;296235	296223			14	
LYTVEYLSNMVGGR	0	Unmodified	1600.7919	0.79192806	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	4	3	85.309	84.759	2;3	3.4224E-06	73306	160511_QHF_FH_JSI12i_2	133.89	119.2			0.87189	0.97735	31.195	7	7	Median	NaN	NaN	NaN	0	0	Median	0.79948	0.97735	NaN	1	1	Median	0.92683	0.88396	37.91	4	4	Median	0.80229	0.84987	33.219	2	2	Median	210760000	105890000	104870000	0	0	0	58367000	39605000	18762000	106150000	46120000	60029000	46242000	20165000	26077000	35597	2475	33697	219479;219480;219481;219482;219483;219484;219485;219486;219487	296236;296237;296238;296239;296240;296241;296242;296243;296244	296238			9	
LYTVEYLSNMVGGRK	1	Unmodified	1728.8869	0.88689108	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		75.935	74.983	3	2.8216E-15	63129	160511_QHF_FH_JSI10i_3	146.77	133.65			1.1253	0.92567	6.8326	3	0	Plateau	1.1253	0.92567	NaN	1	0	Median	0.76371	0.92897	NaN	1	0	Median	0.88615	0.82385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	312170000	145830000	166340000	136350000	61206000	75140000	81188000	51304000	29884000	94632000	33317000	61315000	0	0	0	35598	2475	33698	219488;219489;219490	296245;296246;296247;296248	296246			4	
LYTVVPR	0	Unmodified	846.49634	0.49633839	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		34.794	34.073	2	0.014342	29694	160511_QHF_FH_JSI11i_3	67.035	31.929			1.119	0.99157	27.228	2	2	Median	0.98985	0.81791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.265	1.2021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	364980000	184860000	180120000	75487000	46402000	29085000	0	0	0	289490000	138460000	151030000	0	0	0	35599	1520	33699	219491;219492	296249;296250	296249			2	
LYTWVEWVK	1	Unmodified	1222.6386	0.63864553	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	86.028	82.676	2	0.00018805	74878	160511_QHF_FH_JSI12i_2	86.011	39.585			0.81921	0.93544	32.492	11	2	Median	1.0013	0.85746	40.804	2	0	Median	0.64297	0.76819	17.039	3	0	Median	0.98696	0.93544	36.641	3	1	Median	0.81921	0.86899	33.296	3	1	Plateau	1957000000	1106300000	850690000	270510000	142880000	127640000	708100000	419980000	288120000	503950000	256540000	247400000	474410000	286890000	187530000	35600	5215	33700	219493;219494;219495;219496;219497;219498;219499;219500;219501;219502;219503	296251;296252;296253;296254;296255;296256;296257;296258;296259;296260;296261;296262;296263;296264;296265;296266;296267;296268;296269	296253			17	
LYVDFPQHLR	0	Unmodified	1286.6772	0.6771563	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.181	59.265	3	0.00021927	52313	160511_QHF_FH_JSI10i_2	67.704	62.81			0.68946	0.7506	15.542	4	3	Median	0.98701	0.84844	NaN	1	1	Median	0.55177	0.68539	NaN	1	1	Median	0.83327	0.82202	NaN	1	0	Median	0.57047	0.61046	NaN	1	1	Median	172020000	92837000	79183000	38091000	18791000	19300000	60164000	33841000	26323000	47052000	22504000	24548000	26714000	17701000	9012400	35601	1529	33701	219504;219505;219506;219507	296270;296271;296272;296273	296273			4	
LYVELHR	0	Unmodified	928.51305	0.51305109	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				32.947	31.905	3	0.040055	27762	160511_QHF_FH_JSI9i_2	22.131	4.0956			1.4186	1.2352	NaN	1	0	Median	1.4186	1.2352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12267000	4293500	7973500	12267000	4293500	7973500	0	0	0	0	0	0	0	0	0	35602	2215	33702	219508	296274	296274			1	
LYVELHRGEELGGGQDPVQLLSGFPR	0	Unmodified	2865.4773	0.47734087	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			98.322	98.061	4	0.049381	81167	160511_QHF_FH_JSI10i_3	17.716	15.209			0.29995	0.35546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29995	0.35546	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3904400	3402300	502120	0	0	0	3904400	3402300	502120	0	0	0	0	0	0	35603	2215	33703	219509	296275	296275			1	
LYVGNIPFGITEEAMMDFFNAQMR	0	Unmodified	2793.2965	0.29646466	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.79	93.344	3	1.5483E-18	55986	160513_QHF_FH_JSI10Kac_6	110.4	103.37			1.0131	1.0276	1.0761	2	1	Median	1.1704	1.0198	NaN	1	1	Median	0.87688	1.0354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155100000	65487000	89618000	35303000	9137000	26166000	119800000	56350000	63452000	0	0	0	0	0	0	35604	1274	33704	219510;219511	296276;296277	296277			2	
LYVGSLHFNITEDMLR	0	Unmodified	1906.9611	0.96111866	2538	Q14498	RBM39	RNA-binding protein 39	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			2						2	1	1		2	89.01	84.242	2;3	3.3295E-63	44819	160513_QHF_FH_JSI10Kac_6	212.95	186.24			1.1586	0.91717	33.418	3	2	Plateau	1.376	1.1753	NaN	1	1	Median	0.59791	0.71571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1586	1.3519	NaN	1	1	Median	440470000	210770000	229700000	227500000	94230000	133270000	140100000	80620000	59480000	0	0	0	72868000	35921000	36948000	35605	2538	33705	219512;219513;219514;219515	296278;296279;296280;296281;296282	296282			5	
LYVHEAVK	1	Unmodified	957.52837	0.5283668	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	19.484	18.396	3	0.0097114	15100	160511_QHF_FH_JSI12i_2	47.198	23.769			2.0598	2.3565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0598	2.3565	NaN	1	1	Median	53659000	16008000	37651000	0	0	0	0	0	0	0	0	0	53659000	16008000	37651000	35606	2636	33706	219516	296283	296283			1	
LYVHTLTITSK	1	Unmodified	1274.7234	0.72343779	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	3	3	52.591	46.083	2;3	1.5575E-27	25102	160513_QHF_FH_JSI11Kac_6	152.7	140.97			1.0485	1.0085	11.358	12	0	Median	1.1891	1.0119	10.236	3	0	Median	0.74022	0.88497	4.9837	3	0	Median	1.2383	1.1767	9.93	3	0	Median	1	1.0531	7.9724	3	0	Median	3274100000	1605600000	1668500000	904790000	448260000	456520000	959240000	501010000	458230000	691040000	307140000	383900000	719090000	349200000	369880000	35607	3943	33707	219517;219518;219519;219520;219521;219522;219523;219524;219525;219526;219527;219528	296284;296285;296286;296287;296288;296289;296290;296291;296292;296293;296294;296295;296296;296297;296298;296299;296300;296301;296302	296287			18	
LYVLQGGLAQQEWR	0	Unmodified	1659.8733	0.87328993	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.397	75.397	2	0.0030345	67296	160511_QHF_FH_JSI11i_3	57.348	40.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35608	2588	33708	219529	296303	296303			1	
LYVPHSLWPQIK	1	Unmodified	1479.8238	0.82382054	1331	P30038	ALDH4A1	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.808	78.062	3	7.1653E-06	67585	160511_QHF_FH_JSI12i_3	107.06	101.78			1.0743	1.0547	5.9483	4	0	Median	1.2227	1.0249	NaN	1	0	Median	0.94166	1.0853	NaN	1	0	Median	1.1879	1.1158	NaN	1	0	Median	0.97152	0.97661	NaN	1	0	Median	203860000	99826000	104030000	33855000	15843000	18013000	36908000	19240000	17668000	46185000	20164000	26021000	86907000	44579000	42328000	35609	1331	33709	219530;219531;219532;219533	296304;296305;296306;296307;296308;296309;296310;296311;296312;296313;296314	296313			11	
LYVPLYSSK	1	Unmodified	1068.5855	0.58554733	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.6	5.71	1	3							1	1	1	2	1	60.571	59.789	2	0.00035439	51284	160511_QHF_FH_JSI12i_2	82.279	59.539			1.7043	1.7371	8.469	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4064	1.7379	NaN	1	0	Median	1.7043	1.6913	3.7103	2	0	Median	1.7464	2.0066	NaN	1	0	Median	227430000	94219000	133210000	0	0	0	70347000	28499000	41849000	103000000	39532000	63470000	54082000	26189000	27892000	35610	641	33710	219534;219535;219536;219537;219538	296315;296316;296317;296318;296319	296316			5	
LYVSNLGIGHTR	0	Unmodified	1328.7201	0.72008375	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	2	2	1		49.479	45.285	3	2.4254E-07	37958	160511_QHF_FH_JSI10i_3	115.57	108.01			0.98939	0.92387	52.399	5	0	Median	0.67807	0.57226	67.738	2	0	Median	0.85405	0.9954	25.125	2	0	Median	1.4416	1.3491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	402720000	199200000	203520000	152380000	74280000	78097000	176470000	92896000	83579000	73870000	32028000	41843000	0	0	0	35611	2241	33711	219539;219540;219541;219542;219543	296320;296321;296322;296323;296324;296325;296326	296322			6	
LYWAVFSEYVK	1	Unmodified	1403.7125	0.71253876	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		1							5	1	1	3	1	91.552	84.44	2	2.4792E-07	45268	160513_QHF_FH_JSI11Kac_6	111.46	73.099			0.87092	0.93447	52.493	6	4	Median	1.1029	0.94255	NaN	1	0	Median	0.86238	1.0385	NaN	1	1	Median	0.83486	0.80071	72.739	3	3	Median	0.87955	0.92647	NaN	1	0	Median	817420000	441780000	375640000	150160000	73389000	76774000	295110000	159800000	135300000	245210000	131500000	113720000	126940000	77087000	49850000	35612	265	33712	219544;219545;219546;219547;219548;219549	296327;296328;296329;296330;296331;296332	296327			6	
LYWDDLK	1	Unmodified	951.47018	0.47018322	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		60.939	60.253	2	0.014406	53390	160511_QHF_FH_JSI10i_2	66.799	22.078			3.891	4.382	5.6979	2	2	Median	NaN	NaN	NaN	0	0	Median	3.7111	4.5621	NaN	1	1	Median	4.0796	4.2089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1037400000	156950000	880440000	0	0	0	452370000	62950000	389420000	585010000	93999000	491010000	0	0	0	35613	793	33713	219550;219551	296333;296334	296334			2	
LYWDDLKR	1	Unmodified	1107.5713	0.57129425	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	48.581	48.341	3	0.0075555	41309	160511_QHF_FH_JSI12i_3	41.427	33.781			0.73648	0.74018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73648	0.74018	NaN	1	0	Median	88087000	44095000	43993000	0	0	0	0	0	0	0	0	0	88087000	44095000	43993000	35614	793	33714	219552	296335;296336	296335			2	
LYWQGGPALGR	0	Unmodified	1216.6353	0.63529149	1399	P32970	CD70	CD70 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	59.444	58.633	2	1.2811E-06	49056	160511_QHF_FH_JSI10i_3	112.94	99.349			0.83462	1.0025	16.242	7	0	Median	1.2342	1.004	0.20627	2	0	Median	0.88633	1.0688	4.7002	2	0	Median	0.76939	0.76062	4.947	2	0	Median	0.77744	0.79483	NaN	1	0	Median	864010000	439260000	424760000	227040000	106500000	120550000	270130000	133870000	136260000	229480000	124760000	104720000	137360000	74135000	63228000	35615	1399	33715	219553;219554;219555;219556;219557;219558;219559	296337;296338;296339;296340;296341;296342;296343;296344;296345;296346;296347;296348;296349;296350	296339			13	
LYYDTDYGSK	1	Unmodified	1223.5346	0.53463397	4934	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	34.739	34.153	2	0.0070076	30851	160511_QHF_FH_JSI12i_1	61.65	53.607			4.2934	4.5235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.2934	4.5235	NaN	1	1	Median	224190000	26807000	197380000	0	0	0	0	0	0	0	0	0	224190000	26807000	197380000	35616	4934	33716	219560;219561	296351;296352	296351			2	
LYYFQYPCYQEGLR	0	Unmodified	1898.8662	0.86615564	4966	Q9NRW3	APOBEC3C	DNA dC->dU-editing enzyme APOBEC-3C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	1	2	2	3	78.886	75.263	2	2.3729E-16	37375	160513_QHF_FH_JSI12Kac_6	135.66	112.75			1.0054	1.0665	15.394	7	3	Median	NaN	NaN	NaN	0	0	Median	0.84743	0.9982	13.877	2	1	Median	1.0551	1.0549	1.5456	2	0	Median	1.4512	1.4808	18.859	3	2	Plateau	145600000	71104000	74496000	4488900	0	4488900	41734000	21862000	19872000	53324000	27913000	25411000	46053000	21330000	24724000	35617	4966	33717	219562;219563;219564;219565;219566;219567;219568;219569	296353;296354;296355;296356;296357;296358;296359;296360;296361;296362;296363;296364	296363			12	
LYYILLAHLAAPK	1	Unmodified	1484.8755	0.87552176	2803	Q2VPB7	AP5B1	AP-5 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.382	76.141	3	5.2009E-17	43071	160513_QHF_FH_JSI10Kac_6	134.2	121			0.60298	0.63308	32.073	4	0	Median	0.59868	0.50804	NaN	1	0	Median	0.60731	0.73007	NaN	1	0	Median	0.57653	0.54898	NaN	1	0	Median	0.94818	1.0305	NaN	1	0	Median	483330000	284610000	198730000	144020000	89097000	54923000	150160000	91087000	59076000	129470000	80434000	49037000	59680000	23990000	35690000	35618	2803	33718	219570;219571;219572;219573	296365;296366;296367;296368;296369;296370	296370			5	
LYYLGMPYGSR	0	Unmodified	1318.638	0.63799361	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS			15.7	0.471								1	2	1	2			73.884	65.039	2	6.667E-07	35911	160513_QHF_FH_JSI10Kac_6	105.78	93.559			1.0901	1.0366	28.447	3	0	Plateau	1.3428	1.1333	NaN	1	0	Median	1.1557	1.3519	37.564	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139340000	85964000	53380000	32066000	16616000	15451000	107280000	69348000	37930000	0	0	0	0	0	0	35619	3308	33719	219574;219575;219576	296371;296372	296372			2	
LYYNLDDIAYVGK	1	Unmodified	1545.7715	0.7715102	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	7	1							1			1	1		83.48	78.141	2	8.7345E-05	75343	160511_QHF_FH_JSI10i_1	73.885	56.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35620	991	33720	219577;219578	296373;296374	296373			2	
LYYNLDDIAYVGKPLVDIETEALK	2	Unmodified	2754.4368	0.43676441	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	96.367	86.946	3	1.8221E-26	47378	160513_QHF_FH_JSI12Kac_6	134.98	115.25			0.91343	0.90049	29.787	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1986	1.1116	NaN	1	1	Median	0.69609	0.72946	NaN	1	0	Median	170170000	83170000	87004000	0	0	0	0	0	0	61571000	21559000	40012000	108600000	61611000	46992000	35621	991	33721	219579;219580	296375;296376	296376			2	
LYYQQLK	1	Unmodified	954.51747	0.51746776	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.012	33.081	2	0.009769	28227	160511_QHF_FH_JSI11i_2	77.72	37.034			1.1548	1.182	32.711	4	0	Median	1.4049	1.1922	NaN	1	0	Median	0.94914	1.172	NaN	1	0	Median	0.93145	0.94859	NaN	1	0	Median	1.8284	2.0426	NaN	1	0	Median	478380000	240950000	237430000	91464000	39887000	51577000	100780000	50397000	50381000	164150000	93937000	70217000	121980000	56728000	65256000	35622	3922	33722	219581;219582;219583;219584	296377;296378	296378			2	
MAAADSVQQR	0	Unmodified	1075.508	0.50804206	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	2	3	1	13.688	10.253	2	1.3912E-09	8950	160511_QHF_FH_JSI11i_1	134.48	121.89			0.93134	0.98707	11.547	7	0	Median	1.1141	0.91191	NaN	1	0	Median	0.8315	0.96357	14.843	2	0	Median	0.859	0.84292	15.729	3	0	Plateau	0.93134	0.98707	NaN	1	0	Median	1156400000	599460000	556930000	221900000	102710000	119190000	352590000	192030000	160560000	253300000	142250000	111050000	328590000	162460000	166130000	35623	3463	33723	219585;219586;219587;219588;219589;219590;219591	296379;296380;296381;296382;296383;296384;296385;296386;296387;296388	296380			10	
MAAAFNTTVAALEDELTQLILEGLISAR	0	Unmodified	2960.5529	0.55287358	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.46	99.741	3	2.1263E-16	59091	160513_QHF_FH_JSI10Kac_6	147.25	128.2			1.0553	1.2399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0553	1.2399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118740000	28267000	90476000	0	0	0	118740000	28267000	90476000	0	0	0	0	0	0	35624	2349	33724	219592	296389	296389			1	
MAAAGGGGGGGR	0	Unmodified	917.41375	0.41374775	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	5.26	5	4	1				3			2	4	3	4	4.7879	2.6162	2	3.2714E-05	2188	160511_QHF_FH_JSI12i_3	106.04	101.19			1.1494	1.0891	12.654	9	2	Median	1.302	1.0793	3.855	2	1	Median	1.0105	1.2143	15.396	2	1	Median	1.2389	1.2425	13.741	2	0	Median	0.91036	0.94672	7.0985	3	0	Plateau	3399400000	1670200000	1729200000	604250000	285970000	318280000	578450000	290490000	287960000	1539200000	724720000	814430000	677550000	368990000	308560000	35625	1063	33725	219593;219594;219595;219596;219597;219598;219599;219600;219601;219602;219603;219604;219605	296390;296391;296392;296393;296394;296395;296396;296397;296398;296399;296400;296401;296402;296403;296404	296404			15	
MAAAPALK	1	Unmodified	771.4313	0.43129529	4990	Q9NTJ4	MAN2C1	Alpha-mannosidase 2C1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		28.612	28.243	2	0.024009	23796	160511_QHF_FH_JSI11i_2	43	29.225			9.1936	9.3554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.1936	9.3554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182020000	14470000	167550000	0	0	0	0	0	0	182020000	14470000	167550000	0	0	0	35626	4990	33726	219606	296405	296405			1	
MAADDVEEYMIERPEPEFQDLNEK	1	Unmodified	2897.2735	0.27354019	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	84.398	83.856	3	2.7925E-24	76510	160511_QHF_FH_JSI11i_1	151.33	148.75			1.0286	1.0993	6.6123	9	1	Median	1.3943	1.1749	11.648	2	1	Median	0.9798	1.1646	3.0899	2	0	Median	1.0683	1.0643	7.0137	2	0	Median	1.0286	1.0861	0.95968	3	0	Median	907380000	445820000	461550000	177810000	82259000	95550000	236320000	128880000	107440000	233050000	113500000	119540000	260200000	121180000	139020000	35627	4445	33727	219607;219608;219609;219610;219611;219612;219613;219614;219615	296406;296407;296408;296409;296410;296411;296412;296413;296414;296415;296416;296417;296418;296419;296420;296421;296422;296423;296424;296425;296426	296407			21	
MAAERQEALR	0	Acetyl (Protein N-term)	1215.603	0.60300508	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	41.87	40.906	2	0.0044896	35883	160511_QHF_FH_JSI9i_2	50.607	20.352			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35628	5453	33728	219616;219617;219618;219619	296427;296428;296429;296430;296431	296429			5	
MAAETDPHK	1	Unmodified	998.44913	0.4491302	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	6.9124	6.3107	2	0.001492	4010	160511_QHF_FH_JSI11i_2	71.379	54.14			0.62024	0.69474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62024	0.69474	NaN	1	1	Median	15438000	11023000	4414800	0	0	0	0	0	0	0	0	0	15438000	11023000	4414800	35629	2947	33729	219620;219621	296432;296433	296433			2	
MAAETDPHKSSEITK	2	Acetyl (K)	1685.7931	0.79305028	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	33.505	24.336	3	0.011022	14394	160513_QHF_FH_JSI10Kac_4	40.801	36.171			0.93756	1.0614	17.687	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79638	0.93659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1038	1.2028	NaN	1	0	Median	10160000	5796800	4362800	0	0	0	6192000	3685000	2507000	0	0	0	3967600	2111800	1855800	35630	2947	33730	219622;219623	296434;296435;296436;296437	296435	2722		4	
MAAGDIGELLVPHMPTIR	0	Unmodified	1919.9961	0.99612396	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.951	98.951	3	0.00017146	88217	160511_QHF_FH_JSI11i_3	71.558	61.77			1.3629	1.282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3629	1.282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41519000	16026000	25493000	0	0	0	0	0	0	41519000	16026000	25493000	0	0	0	35631	3920	33731	219624	296438	296438			1	
MAAGELEGGK	1	Acetyl (Protein N-term)	1003.4644	0.46444592	3552	Q8N668	COMMD1	COMM domain-containing protein 1	no	no	0	1	0	0	By MS/MS				1	0	1									1				45.875	44.651	2	1			NaN	NaN			1.2109	0.9977	NaN	1	0	Median	1.2109	0.9977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58137000	25799000	32337000	58137000	25799000	32337000	0	0	0	0	0	0	0	0	0	35632	3552	33732	219625					0	
MAAGSSGAPWMPK	1	Unmodified	1289.5897	0.5896632	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.642	49.246	2	0.0054948	42147	160511_QHF_FH_JSI12i_2	53.124	40.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35633	3875	33733	219626	296439	296439			1	
MAAGTSTFVVAYAIHK	1	Unmodified	1665.8549	0.85486267	4162	Q96KR6	FAM210B	Protein FAM210B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		73.241	64.772	3	0.0001993	35148	160513_QHF_FH_JSI11Kac_6	71.98	63.803			0.88834	0.83117	11.195	3	0	Median	0.88834	0.75746	NaN	1	0	Median	0.7185	0.83117	NaN	1	0	Median	0.97575	0.94656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104390000	62170000	42217000	21051000	8735500	12315000	52259000	36638000	15621000	31078000	16797000	14281000	0	0	0	35634	4162	33734	219627;219628;219629	296440;296441;296442;296443	296441			4	
MAAHTMGNATVGR	0	Unmodified	1315.6125	0.61252391	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	4	2	1	14.776	14.191	2;3	4.7395E-11	11472	160511_QHF_FH_JSI11i_3	128.21	117.56			1.0978	1.2043	38.49	8	1	Median	2.1352	1.7312	7.1059	2	0	Median	1.4364	1.6241	29.146	3	1	Plateau	0.76813	0.74013	9.5749	2	0	Median	0.92912	0.93019	NaN	1	0	Median	310880000	145850000	165030000	78262000	28428000	49834000	97071000	42886000	54185000	82476000	44777000	37699000	53071000	29760000	23311000	35635	1526	33735	219630;219631;219632;219633;219634;219635;219636;219637;219638	296444;296445;296446;296447;296448;296449;296450;296451;296452;296453;296454;296455	296446			12	
MAAHTMGNATVGR	0	Oxidation (M)	1331.6074	0.60743853	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	1	0	By matching	By MS/MS			3	0			2							1	1			15.185	14.228	3	0.014371	11385	160511_QHF_FH_JSI10i_3	36.631	33.099			1.1405	1.1112	48.039	2	0	Median	1.8428	1.5606	NaN	1	0	Median	0.70589	0.79114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34022000	16063000	17959000	11490000	3981500	7508500	22532000	12082000	10450000	0	0	0	0	0	0	35636	1526	33735	219639;219640	296456	296456		1204	1	
MAALEAK	1	Unmodified	732.38401	0.38401075	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	16.711	16.063	2	0.0082581	12977	160511_QHF_FH_JSI12i_2	84.244	66.682			0.88234	1.1013	31.823	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88234	1.1013	NaN	1	0	Median	0.68297	0.70026	NaN	1	0	Median	1.1523	1.2936	NaN	1	0	Median	1271500000	659430000	612070000	0	0	0	293060000	131910000	161150000	525590000	273110000	252480000	452860000	254420000	198440000	35637	840	33736	219641;219642;219643	296457;296458;296459	296458			3	
MAAMILLIQDDAVHTLQFVETLVNLVK	1	Unmodified	3024.6392	0.63918616	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									4		3		1	106.29	99.641	3;4	1.7824E-111	59596	160513_QHF_FH_JSI10Kac_6	283.93	258.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	414040000	135660000	278380000	0	0	0	410030000	131650000	278380000	0	0	0	4008200	4008200	0	35638	2213	33737	219644;219645;219646;219647	296460;296461;296462;296463	296461			4	
MAAMRKALPR	1	Acetyl (Protein N-term);Oxidation (M)	1201.6424	0.64236748	1448	P35914	HMGCL	Hydroxymethylglutaryl-CoA lyase, mitochondrial	yes	yes	0	1	1	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.97	102.88	2	0.024408	93609	160511_QHF_FH_JSI11i_1	31.372	9.8658			1.2371	1.1519	17.019	4	0	Median	1.3017	1.1041	NaN	1	0	Median	1.2499	1.481	NaN	1	0	Median	1.2244	1.2018	NaN	1	0	Median	0.97022	0.99085	NaN	1	0	Median	363280000	174990000	188290000	64958000	28386000	36572000	111360000	54788000	56575000	100620000	50010000	50615000	86333000	41806000	44528000	35639	1448	33738	219648;219649;219650;219651	296464;296465;296466;296467	296464			4	
MAAPIDR	0	Unmodified	772.39016	0.39015876	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.5	1	6	1							2	1	3	2	19.503	18.96	2	0.012406	15405	160511_QHF_FH_JSI12i_2	69.432	0			1.1189	1.0805	8.9106	8	0	Median	1.3124	1.1212	11.891	2	0	Median	0.81779	0.99592	NaN	1	0	Median	1.1065	1.0899	4.0324	3	0	Median	1.1116	1.1792	13.6	2	0	Median	5585200000	2734600000	2850600000	1347400000	603270000	744150000	652750000	359830000	292920000	2498100000	1162400000	1335800000	1087000000	609180000	477770000	35640	1765	33739	219652;219653;219654;219655;219656;219657;219658;219659	296468;296469;296470;296471	296468			4	
MAAPIDR	0	Oxidation (M)	788.38507	0.38507338	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	2	2	1							1	1	1	2	19.347	18.967	2	0.056061	16188	160511_QHF_FH_JSI10i_1	48.756	20.333			1.4067	1.4424	48.589	5	0	Median	0.92971	0.78911	NaN	1	0	Median	2.5368	2.9932	NaN	1	0	Median	1.4067	1.4424	NaN	1	0	Median	1.3064	1.3289	18.55	2	0	Median	531560000	224760000	306800000	116400000	64116000	52281000	109540000	28144000	81394000	184320000	76407000	107910000	121310000	56094000	65213000	35641	1765	33739	219660;219661;219662;219663;219664	296472	296472			1	
MAAQIIGNMYSLTDQK	1	Unmodified	1782.8644	0.86444108	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.343	1	15	1							4	3	4	6	79.441	78.626	2;3	1.0481E-13	69269	160511_QHF_FH_JSI9i_2	200.44	182.17			0.80253	0.97724	64.577	15	14	Median	0.9974	0.84702	77.379	4	4	Median	0.80253	0.97724	33.668	3	2	Median	0.85385	0.84958	76.608	4	4	Median	0.77732	0.84252	80.228	4	4	Median	789760000	398170000	391590000	162860000	65051000	97813000	143600000	76910000	66690000	301160000	160940000	140220000	182140000	95273000	86866000	35642	3860	33740	219665;219666;219667;219668;219669;219670;219671;219672;219673;219674;219675;219676;219677;219678;219679;219680;219681	296473;296474;296475;296476;296477;296478;296479;296480;296481;296482;296483;296484;296485;296486;296487;296488;296489;296490;296491;296492	296479			20	
MAASSVKK	2	Unmodified	820.44767	0.44767364	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	5.6627	5.1664	2;3	0.0018627	3140	160511_QHF_FH_JSI12i_3	87.323	70.396			0.92861	1.0793	20.252	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92861	1.0793	20.252	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	316750000	173740000	143010000	0	0	0	316750000	173740000	143010000	0	0	0	0	0	0	35643	4361	33741	219682;219683;219684;219685	296493;296494;296495;296496;296497	296497			5	
MADAIILAIAGGQELLAR	0	Unmodified	1825.0132	0.013154229	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		5							5	2	3	2	3	100.01	95.754	3	4.8099E-08	50468	160513_QHF_FH_JSI11Kac_6	106.16	84.315			1.0054	1.0415	28.084	8	0	Median	1.1592	0.98284	34.091	2	0	Median	0.66552	0.78483	36.842	2	0	Median	1.0499	1.0415	1.8361	2	0	Median	1.1937	1.2987	20.692	2	0	Median	994820000	532070000	462740000	198800000	76002000	122800000	209990000	134280000	75709000	358990000	212050000	146940000	227030000	109740000	117300000	35644	636	33743	219686;219687;219688;219689;219690;219691;219692;219693;219694;219695	296498;296499;296500;296501;296502;296503;296504;296505	296500			7	
MADCGGLPQISQPAK	1	Unmodified	1571.7436	0.74359766	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.181	47.761	2	0.00016051	43200	160511_QHF_FH_JSI11i_1	93.348	86.46			0.67647	0.71994	4.6659	2	1	Median	NaN	NaN	NaN	0	0	Median	0.64529	0.74409	NaN	1	1	Median	0.70915	0.69657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205790000	118840000	86954000	0	0	0	85249000	53380000	31869000	120540000	65459000	55085000	0	0	0	35645	3851	33744	219696;219697	296506;296507;296508;296509	296507			4	
MADDLKR	1	Unmodified	847.42219	0.42218717	5292	Q9UHA4	LAMTOR3	Ragulator complex protein LAMTOR3	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		3								2		1		24.14	23.235	3	0.01499	26994	160511_QHF_FH_JSI11i_2	40.203	20.566			2.3429	2.0122	157.23	2	1	Median	2.3429	2.0122	157.23	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67465000	13216000	54249000	67465000	13216000	54249000	0	0	0	0	0	0	0	0	0	35646	5292	33745	219698;219699;219700	296510;296511;296512	296512			3	
MADDVVAIESEVK	1	Unmodified	1404.6806	0.68064628	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	62.443	61.93	2	0.0058014	56292	160511_QHF_FH_JSI12i_1	61.435	34.649			0.60979	0.67749	5.5652	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60649	0.70468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61311	0.65134	NaN	1	1	Median	99038000	55326000	43711000	0	0	0	49108000	28461000	20647000	0	0	0	49930000	26865000	23065000	35647	3811	33746	219701;219702	296513;296514	296513			2	
MADEAILQER	0	Unmodified	1174.5652	0.56522259	4853	Q9HCD5	NCOA5	Nuclear receptor coactivator 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.802	38.379	2	0.010622	34380	160511_QHF_FH_JSI10i_1	57.267	40.498			1.3724	1.3137	9.6323	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.93471	1.1085	NaN	1	1	Median	1.3724	1.3142	NaN	1	1	Median	1.0984	1.1163	NaN	1	1	Median	379930000	195140000	184790000	0	0	0	111750000	55517000	56235000	152130000	80955000	71174000	116050000	58671000	57380000	35648	4853	33747	219703;219704;219705	296515;296516;296517	296517			3	
MADFWLTEK	1	Unmodified	1139.5321	0.53213155	4969	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.43	68.532	2	2.962E-05	59770	160511_QHF_FH_JSI11i_2	102.61	61.622			1.1381	1.225	15.252	4	0	Median	1.5638	1.3135	NaN	1	0	Median	0.79779	0.95427	NaN	1	0	Median	1.2699	1.3186	NaN	1	0	Median	1.02	1.1425	NaN	1	0	Median	262820000	125440000	137380000	50102000	18462000	31640000	49501000	28595000	20906000	91694000	43300000	48395000	71520000	35084000	36436000	35649	4969	33748	219706;219707;219708;219709	296518;296519;296520;296521;296522;296523;296524;296525	296522			8	
MADGSLTGGGLEAAAMAPER	0	Unmodified	1903.8768	0.87679668	3639	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				30.176	29.135	4	0.059565	25271	160511_QHF_FH_JSI9i_2	8.1875	0			1.6231	1.412	NaN	1	0	Median	1.6231	1.412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33777000	13649000	20127000	33777000	13649000	20127000	0	0	0	0	0	0	0	0	0	35650	3639	33749	219710	296526	296526			1	
MADGVANVEHILK	1	Unmodified	1395.718	0.71803484	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	57.874	56.941	3	0.01747	50226	160511_QHF_FH_JSI10i_2	32.681	27.022			1.1069	1.1228	10.223	4	0	Median	1.2979	1.1053	NaN	1	0	Median	0.93669	1.1406	NaN	1	0	Median	1.315	1.3349	NaN	1	0	Median	0.94394	1.0545	NaN	1	0	Median	340470000	170460000	170010000	60297000	34057000	26239000	65696000	36149000	29546000	127120000	49345000	77778000	87355000	50911000	36444000	35651	4637	33750	219711;219712;219713;219714	296527	296527			1	
MADIEYR	0	Unmodified	896.4062	0.40620276	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	26.293	25.399	2	0.012815	21324	160511_QHF_FH_JSI11i_2	68.787	48.94			0.84297	0.93134	20.352	4	0	Median	0.83787	0.70754	NaN	1	0	Median	0.81659	0.9978	NaN	1	0	Median	0.84811	0.86931	NaN	1	0	Median	1.043	1.1392	NaN	1	0	Median	262060000	135150000	126910000	61261000	31287000	29973000	44815000	22869000	21946000	94641000	50144000	44497000	61347000	30849000	30498000	35652	1505	33751	219715;219716;219717;219718	296528	296528			1	
MADLSELLK	1	Unmodified	1018.5369	0.53688258	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	76.176	75.511	2	3.8515E-05	66212	160511_QHF_FH_JSI11i_2	99.139	65.588			0.86393	0.94951	17.529	8	0	Median	1.2439	1.0442	12.902	2	0	Median	0.86393	1.0493	14.671	2	0	Median	0.8937	0.88767	24.77	2	0	Median	0.73975	0.78993	4.8366	2	0	Median	543020000	276330000	266690000	83181000	33398000	49783000	130550000	65200000	65352000	202310000	107060000	95251000	126980000	70666000	56309000	35653	1355	33752	219719;219720;219721;219722;219723;219724;219725;219726	296529;296530;296531;296532;296533;296534;296535;296536;296537;296538;296539	296538			11	
MADPQSIQESQNLSMFLANHNK	1	Unmodified	2502.1631	0.1631423	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	75.035	74.288	3	7.2488E-28	66031	160511_QHF_FH_JSI10i_2	190.63	185.72			0.99575	1.0102	29.536	6	3	Median	0.9845	0.85841	NaN	1	0	Median	0.72981	0.90717	12.49	2	2	Median	1.0147	1.0299	NaN	1	0	Median	1.3998	1.4417	37.186	2	1	Median	562680000	288950000	273730000	45624000	24591000	21033000	213270000	127720000	85547000	179490000	86786000	92706000	124300000	49853000	74445000	35654	3229	33753	219727;219728;219729;219730;219731;219732	296540;296541;296542;296543;296544;296545;296546;296547;296548;296549	296548			10	
MADVSAEEK	1	Unmodified	978.43281	0.43281144	4401	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			13.31	13.072	2	0.013949	10702	160511_QHF_FH_JSI10i_1	55.908	38.523			0.50662	0.61032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50662	0.61032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65005000	41757000	23248000	0	0	0	65005000	41757000	23248000	0	0	0	0	0	0	35655	4401	33754	219733	296550	296550			1	
MAEADRTAIHEVMEQQTISIAK	1	Unmodified	2471.2148	0.21484352	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	63.34	62.868	3	1.056E-07	54088	160511_QHF_FH_JSI12i_3	103.95	95.346			1.3397	1.3885	43.138	3	3	Median	NaN	NaN	NaN	0	0	Median	1.7363	2.0473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0834	1.096	33.45	2	2	Median	72584000	34251000	38332000	0	0	0	17717000	3454900	14262000	0	0	0	54867000	30797000	24071000	35656	1411	33755	219734;219735;219736;219737	296551;296552;296553;296554;296555	296554			5	
MAEAGDAALSVAEWLR	0	Unmodified	1688.8192	0.81920545	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				96.474	87.408	3	0.057832	49815	160513_QHF_FH_JSI9Kac_6	9.7492	3.969			0.82221	0.71345	NaN	1	0	Median	0.82221	0.71345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84077000	52405000	31672000	84077000	52405000	31672000	0	0	0	0	0	0	0	0	0	35657	4191	33756	219738	296556	296556			1	
MAEALAHGADVNWANSEENK	1	Unmodified	2155.9593	0.95928076	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	49.755	48.709	3	3.4075E-11	41936	160511_QHF_FH_JSI11i_2	121.82	113.83			0.91672	0.9831	65.229	4	4	Median	NaN	NaN	NaN	0	0	Median	0.37045	0.45023	NaN	1	1	Median	1.8274	1.8403	NaN	1	1	Median	0.91672	0.9831	52.857	2	2	Median	129320000	60571000	68749000	0	0	0	39165000	19876000	19289000	34054000	10331000	23723000	56101000	30364000	25736000	35658	2620	33757	219739;219740;219741;219742;219743	296557;296558;296559;296560;296561	296559			5	
MAEAVQNHVK	1	Unmodified	1125.5601	0.56007764	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.01		9						2		3	3	3	2	11.462	10.07	2;3	2.7855E-07	8434	160511_QHF_FH_JSI10i_2	128.27	114.27			2.5434	2.8038	110.24	8	8	Median	3.8997	3.326	NaN	1	1	Median	3.0501	3.7643	141.11	3	3	Median	3.1766	3.1335	71.938	2	2	Median	0.78074	0.87344	140.78	2	2	Median	783020000	308680000	474340000	72672000	17558000	55114000	256320000	142410000	113910000	261310000	55136000	206170000	192720000	93574000	99146000	35659	4879	33758	219744;219745;219746;219747;219748;219749;219750;219751;219752;219753;219754	296562;296563;296564;296565;296566;296567;296568;296569;296570;296571;296572	296572			11	
MAEDELFNRYER	0	Unmodified	1571.7038	0.70384134	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		47.946	47.466	3	0.0010209	41992	160511_QHF_FH_JSI10i_2	67.519	51.994			1.0428	1.1239	4.6614	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95674	1.1616	NaN	1	1	Median	1.1366	1.0875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	340020000	149210000	190810000	0	0	0	159720000	73301000	86422000	180300000	75911000	104390000	0	0	0	35660	1895	33759	219755;219756	296573;296574	296574			2	
MAEEGGGGQGDGGSSLASGSTQR	0	Unmodified	2094.8872	0.88723803	5030	Q9NVF7	FBXO28	F-box only protein 28	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.268	18.899	2	3.7819E-14	16342	160511_QHF_FH_JSI12i_1	114.63	101.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35661	5030	33760	219757;219758	296575;296576	296575			2	
MAEEHSEFVVGFISGSR	0	Unmodified	1880.8727	0.87269758	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				75.011	66.42	3	0.00018351	35585	160513_QHF_FH_JSI9Kac_6	70.783	65.572			1.1669	0.95904	NaN	1	0	Median	1.1669	0.95904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16245000	7270300	8974500	16245000	7270300	8974500	0	0	0	0	0	0	0	0	0	35662	989	33761	219759	296577;296578;296579	296579			3	
MAEEKLTHK	2	Acetyl (K)	1127.5645	0.56449431	1105	P16949	STMN1	Stathmin	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		24.732	16.146	3	0.0027253	10199	160513_QHF_FH_JSI11Kac_5	70.1	58.936			0.39161	0.38355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39161	0.38355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23675000	20077000	3598200	0	0	0	0	0	0	23675000	20077000	3598200	0	0	0	35663	1105	33762	219760;219761	296580;296581	296581	962;963		1	
MAEESSSSSSSSSPTAATSQQQQLK	1	Unmodified	2543.1293	0.12931879	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.955	24.396	3	4.0829E-09	21597	160511_QHF_FH_JSI12i_1	75.184	68.31			0.87381	0.87007	24.046	4	2	Median	1.5892	1.2585	NaN	1	1	Median	0.66218	0.74558	NaN	1	0	Median	0.81511	0.7782	NaN	1	1	Median	0.93673	0.97277	NaN	1	0	Median	139780000	71234000	68549000	25633000	7383800	18249000	30395000	16504000	13891000	32582000	23973000	8609200	51173000	23374000	27800000	35664	2457	33763	219762;219763;219764;219765	296582;296583;296584;296585;296586;296587;296588;296589	296584			8	
MAEIGEHVAPSEAANSLEQAQAAAER	0	Unmodified	2679.2559	0.25585671	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	64.439	63.766	3	5.3426E-59	56795	160511_QHF_FH_JSI11i_3	208.69	200.6			0.99379	1.0757	14.772	5	0	Median	0.99379	0.84262	NaN	1	0	Median	0.70944	0.86013	NaN	1	0	Median	1.1394	1.0757	NaN	1	0	Median	1.0499	1.124	5.1466	2	0	Median	715110000	352670000	362440000	162000000	78933000	83070000	121400000	55843000	65561000	192740000	93761000	98974000	238970000	124140000	114830000	35665	1296	33764	219766;219767;219768;219769;219770;219771;219772	296590;296591;296592;296593;296594;296595;296596;296597;296598;296599;296600;296601;296602	296591			13	
MAEIGEHVAPSEAANSLEQAQAAAER	0	Oxidation (M)	2695.2508	0.25077133	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	59.42	59.152	3	2.1384E-07	50918	160511_QHF_FH_JSI12i_3	61.801	58.069			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35666	1296	33764	219773	296603	296603		936	1	
MAELPVDPMLSK	1	Unmodified	1329.6672	0.66724482	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		73.99	73.664	2	0.0005309	66947	160511_QHF_FH_JSI11i_1	84.687	66.823			0.94353	0.91258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94353	0.91258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79253000	32487000	46766000	0	0	0	0	0	0	79253000	32487000	46766000	0	0	0	35667	398	33765	219774	296604	296604			1	
MAENLGFVGPLK	1	Unmodified	1274.6693	0.66929373	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	69.484	68.755	2	2.0528E-05	60626	160511_QHF_FH_JSI9i_2	130.98	119.21			1.2432	1.0748	16.012	5	5	Median	1.2629	1.0748	NaN	1	1	Median	0.84044	0.99002	7.067	2	2	Median	1.3064	1.2925	NaN	1	1	Median	1.2432	1.3875	NaN	1	1	Median	327490000	164330000	163160000	81897000	38781000	43116000	121810000	64674000	57134000	27034000	13323000	13711000	96753000	47551000	49202000	35668	4122	33766	219775;219776;219777;219778;219779;219780	296605;296606;296607;296608;296609;296610;296611;296612;296613	296611			9	
MAESMLAILCHILR	0	Unmodified	1656.8514	0.85137397	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.215	89.494	3	2.8192E-31	51593	160513_QHF_FH_JSI10Kac_6	135.94	119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35669	3290	33767	219781	296614	296614			1	
MAETVDTSEMVNGATEQR	0	Unmodified	1967.8565	0.85645517	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			48.232	47.808	2	4.3139E-07	43039	160511_QHF_FH_JSI10i_1	94.551	86.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35670	2162	33768	219782	296615	296615			1	
MAFGATLDVK	1	Unmodified	1051.5372	0.53721693	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.087	58.764	2	0.012051	50525	160511_QHF_FH_JSI12i_2	45.68	37.34			0.9077	0.98127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9077	0.98127	NaN	1	0	Median	25690000	11240000	14450000	0	0	0	0	0	0	0	0	0	25690000	11240000	14450000	35671	2675	33769	219783	296616	296616			1	
MAFKEPK	2	Acetyl (K)	891.45242	0.45242467	1538	P42568	MLLT3	Protein AF-9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	2	2	2	2	41.582	31.718	2	0.0013988	19321	160513_QHF_FH_JSI11Kac_4	112.17	75.151			0.89829	0.92496	12.527	8	0	Median	0.92568	0.81439	9.9954	2	0	Median	0.76896	0.91244	11.293	2	0	Median	1.0401	1.0346	7.8305	2	0	Median	0.85479	0.93503	15.175	2	0	Median	336030000	180110000	155930000	16377000	9074900	7301700	118610000	67078000	51535000	94387000	53328000	41059000	106660000	50624000	56034000	35672	1538	33770	219784;219785;219786;219787;219788;219789;219790;219791	296617;296618;296619;296620;296621;296622;296623;296624;296625;296626	296621	1551		10	
MAFKEPK	2	Acetyl (K);Oxidation (M)	907.44734	0.44733929	1538	P42568	MLLT3	Protein AF-9	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13.7	0.745						3	2	1			2		4	26.794	18.648	2	0.0091844	11310	160513_QHF_FH_JSI12Kac_4	77.923	54.903			0.87714	0.94272	19.007	6	0	Median	NaN	NaN	NaN	0	0	Median	0.95705	1.1202	9.6633	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83899	0.91117	15.767	4	0	Median	53863000	28697000	25167000	0	0	0	15393000	8309900	7083200	0	0	0	38470000	20387000	18083000	35673	1538	33770	219792;219793;219794;219795;219796;219797	296627;296628;296629;296630;296631;296632	296631	1551	1207	5	
MAFKEPKPMSK	3	Acetyl (K)	1334.6727	0.67266455	1538	P42568	MLLT3	Protein AF-9	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15.8	0.433								1	3		3	1		48.498	38.964	2;3	0.0043701	21472	160513_QHF_FH_JSI10Kac_6	74.841	55.57			0.91978	1.1006	22.815	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86712	1.026	9.9291	2	0	Median	1.6168	1.4943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131110000	65258000	65857000	0	0	0	76321000	44724000	31597000	54794000	20533000	34261000	0	0	0	35674	1538	33771	219798;219799;219800;219801	296633;296634;296635;296636	296636	1551		3	
MAFRPGVVDLPEENR	0	Unmodified	1728.8617	0.86173896	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				61.732	60.216	3	0.015028	49459	160511_QHF_FH_JSI9i_3	39.531	34.817			0.91895	0.76961	NaN	1	0	Median	0.91895	0.76961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33768000	17733000	16034000	33768000	17733000	16034000	0	0	0	0	0	0	0	0	0	35675	396	33772	219802	296637	296637			1	
MAFRYPEPEDK	1	Unmodified	1381.6336	0.63363651	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		41.582	40.815	3	0.016435	35624	160511_QHF_FH_JSI11i_3	38.021	22.99			1.0749	1.109	2.2497	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95385	1.0915	NaN	1	0	Median	1.2113	1.1268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151010000	79319000	71693000	0	0	0	47557000	27308000	20248000	103450000	52011000	51444000	0	0	0	35676	1225	33773	219803;219804	296638	296638			1	
MAGAIAQGLIR	0	Unmodified	1099.6172	0.61719858	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	53.222	52.987	2	0.004305	45374	160511_QHF_FH_JSI12i_3	65.246	56.783			0.35616	0.36309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35616	0.36309	NaN	1	1	Median	141810000	102790000	39024000	0	0	0	0	0	0	0	0	0	141810000	102790000	39024000	35677	2859	33774	219805	296639	296639			1	
MAGAMSTTAK	1	Unmodified	967.44669	0.44668736	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		12.147	11.689	2	0.0019904	9001	160511_QHF_FH_JSI11i_2	62.558	50.511			0.80333	0.8089	41.5	3	0	Median	0.74291	0.62232	NaN	1	0	Median	1.1354	1.4032	NaN	1	0	Median	0.80333	0.8089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134820000	69939000	64880000	34657000	19970000	14687000	30922000	17954000	12968000	69239000	32015000	37225000	0	0	0	35678	5480	33775	219806;219807;219808	296640	296640			1	
MAGATPVFIPLR	0	Unmodified	1271.706	0.70601359	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.861	76.019	2	3.1235E-05	67058	160511_QHF_FH_JSI9i_2	106.68	81.109			1.4004	1.6003	51.86	4	0	Median	0.65415	0.57443	NaN	1	0	Median	1.3425	1.6576	NaN	1	0	Median	1.557	1.5726	NaN	1	0	Median	1.4608	1.6284	NaN	1	0	Median	406870000	189230000	217640000	99495000	58196000	41299000	81649000	43990000	37659000	128410000	47389000	81018000	97322000	39660000	57662000	35679	3176	33776	219809;219810;219811;219812	296641;296642;296643	296642			2	
MAGDETQPTR	0	Unmodified	1104.487	0.48697227	3806	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.5737	8.2229	2	4.6404E-05	6152	160511_QHF_FH_JSI12i_1	93.649	78.034			0.89347	0.90102	9.5551	4	0	Median	1.0582	0.87654	NaN	1	0	Median	0.79599	0.92618	NaN	1	0	Median	0.82769	0.81476	NaN	1	0	Median	0.96448	1.0221	NaN	1	0	Median	395600000	205580000	190020000	88564000	37543000	51021000	121590000	67257000	54334000	91841000	52965000	38875000	93604000	47817000	45788000	35680	3806	33777	219813;219814;219815;219816	296644;296645;296646;296647;296648;296649;296650	296646			7	
MAGDPVANVR	0	Unmodified	1028.5073	0.50731378	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			3	2	2	3	27.991	26.363	2	4.8383E-08	23591	160511_QHF_FH_JSI12i_1	124.98	110.2			1.0064	1.059	28.303	10	1	Median	1.1611	0.96181	51.843	3	1	Median	0.89763	1.0806	2.1276	2	0	Median	1.0064	0.98483	9.5573	2	0	Median	0.89019	0.94371	23.258	3	0	Plateau	2986000000	1471500000	1514500000	724020000	339120000	384900000	750000000	370760000	379240000	815230000	404230000	411000000	696790000	357430000	339360000	35681	1345	33778	219817;219818;219819;219820;219821;219822;219823;219824;219825;219826	296651;296652;296653;296654;296655;296656;296657;296658;296659;296660;296661	296653			11	
MAGNEYVGFSNATFQSER	0	Unmodified	2006.8792	0.87923952	628	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	62.036	60.949	2	1.1973E-06	52304	160511_QHF_FH_JSI12i_2	88.087	74.886			0.52669	0.55762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52669	0.55762	NaN	1	1	Median	22675000	19056000	3619100	0	0	0	8598100	8598100	0	0	0	0	14077000	10457000	3619100	35682	628	33779	219827;219828;219829;219830	296662;296663;296664;296665	296663			4	
MAGTAFDFENMK	1	Unmodified	1360.5792	0.5791581	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	65.57	64.665	2	2.245E-05	56864	160511_QHF_FH_JSI9i_2	115.78	111.48			1.1448	1.0022	37.223	5	5	Median	1.5125	1.3044	37.273	2	2	Median	0.58453	0.73427	NaN	1	1	Median	0.73075	0.74055	NaN	1	1	Median	1.21	1.3715	NaN	1	1	Median	210130000	96792000	113340000	71568000	23492000	48076000	40688000	23763000	16924000	61752000	31619000	30133000	36126000	17917000	18209000	35683	1368	33780	219831;219832;219833;219834;219835	296666;296667;296668;296669;296670	296667			5	
MAGTAFDFENMKR	1	Unmodified	1516.6803	0.68026913	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By matching	2.5	0.5		3	3							1		3	2	54.177	53.65	2;3	1.4149E-05	47496	160511_QHF_FH_JSI11i_3	97.716	91.441			0.99881	0.98194	34.348	6	1	Median	1.2286	1.0466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0852	1.0337	38.642	3	1	Median	0.73942	0.78623	24.167	2	0	Median	753380000	383230000	370150000	66612000	25716000	40896000	0	0	0	391220000	185460000	205770000	295540000	172050000	123490000	35684	1368	33781	219836;219837;219838;219839;219840;219841	296671;296672;296673;296674	296672			3	
MAHISKYDR	1	Acetyl (K)	1161.5601	0.56007764	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	1	0	0	1		By MS/MS	By matching		16	0									3		2	1		28.109	19.765	3	0.0035029	11618	160513_QHF_FH_JSI10Kac_6	54.066	44.285			0.65265	0.69207	67.457	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96559	1.1151	NaN	1	0	Median	0.44113	0.42953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25607000	14640000	10967000	0	0	0	14437000	6987400	7449700	11169000	7652600	3516800	0	0	0	35685	1778	33782	219842;219843;219844	296675;296676	296675	1793		2	
MAIESAGFK	1	Unmodified	952.4688	0.46880301	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	40.301	39.626	2	7.5297E-05	33922	160511_QHF_FH_JSI12i_2	95.909	82.921			1.1595	0.96516	20.64	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.92373	1.0758	NaN	1	0	Median	0.90069	0.85774	NaN	1	0	Median	1.0034	1.0709	30.054	2	0	Median	292800000	144130000	148670000	0	0	0	68978000	31869000	37109000	62331000	28027000	34305000	161490000	84238000	77255000	35686	871	33783	219845;219846;219847;219848;219849	296677;296678;296679	296677			3	
MAIITTHLQYQQEAIQK	1	Unmodified	2015.051	0.050996298	3979	Q96B45	C10orf32	UPF0693 protein C10orf32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	68.195	59.48	3	9.2498E-08	31604	160513_QHF_FH_JSI9Kac_6	111.22	97.317			1.1843	1.2282	29.82	3	2	Plateau	1.1613	0.9928	NaN	1	0	Median	1.263	1.5194	NaN	1	1	Median	1.8176	1.7637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63724000	31813000	31911000	20821000	9317000	11504000	31796000	18804000	12992000	11106000	3691300	7414800	0	0	0	35687	3979	33784	219850;219851;219852;219853;219854	296680;296681;296682;296683;296684	296682			5	
MAILQIMK	1	Unmodified	946.53438	0.53438016	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.39	1	4	6				2	3	4	3	7	5	5	75.194	70.009	2	0.00010875	61696	160511_QHF_FH_JSI12i_2	128.75	117.69			0.91805	0.91112	21.167	18	2	Median	1.1053	0.89103	5.6254	3	0	Plateau	0.75401	0.91766	24.453	5	0	Median	0.99854	1.0053	13.373	5	0	Median	0.8808	0.92465	30.923	5	2	Median	5462800000	2663300000	2799500000	774150000	384520000	389630000	1184500000	612780000	571680000	1514400000	726170000	788240000	1989800000	939790000	1050000000	35688	2380	33785	219855;219856;219857;219858;219859;219860;219861;219862;219863;219864;219865;219866;219867;219868;219869;219870;219871;219872;219873;219874	296685;296686;296687;296688;296689;296690;296691;296692;296693;296694;296695;296696;296697;296698;296699;296700;296701;296702;296703;296704;296705;296706;296707;296708;296709;296710;296711;296712;296713;296714;296715;296716;296717;296718;296719	296690			35	
MAILQIMK	1	Oxidation (M)	962.52929	0.52929478	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		14.7	0.471							2	4		2	3	1		65.391	54.645	2	0.041982	28825	160513_QHF_FH_JSI9Kac_5	75.311	61.153			1.3252	1.278	26.793	6	1	Median	1.7932	1.5006	47.842	2	0	Median	1.053	1.2603	23.153	3	1	Median	1.4166	1.296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32511000	13616000	18894000	17441000	6305800	11135000	13431000	6506700	6923900	1639300	803980	835290	0	0	0	35689	2380	33785	219875;219876;219877;219878;219879;219880	296720;296721;296722;296723	296721			2	
MAILQIMKELNK	2	Acetyl (K)	1472.8095	0.80949238	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		94.512	85.12	2	9.7097E-10	48088	160513_QHF_FH_JSI11Kac_6	153.12	120.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51908000	51908000	0	0	0	0	0	0	0	51908000	51908000	0	0	0	0	35690	2380	33786	219881	296724	296724	2450		1	
MAIMVQSPMFDGK	1	Unmodified	1453.6768	0.67676365	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.759	4	5	3							3	3	3	3	76.727	76.005	2	8.3548E-07	66955	160511_QHF_FH_JSI9i_2	129.89	123.04			1.0138	1.1042	11.834	10	2	Median	1.3516	1.1283	3.5838	2	0	Median	0.97048	1.1834	0.7198	2	0	Median	1.0275	1.093	9.9548	3	0	Plateau	1.0004	1.0318	16.456	3	2	Median	2029100000	971820000	1057300000	308540000	124480000	184060000	492880000	259110000	233770000	495680000	226420000	269260000	732040000	361810000	370220000	35691	939	33787	219882;219883;219884;219885;219886;219887;219888;219889;219890;219891;219892;219893	296725;296726;296727;296728;296729;296730;296731;296732;296733;296734;296735;296736;296737;296738;296739	296738			14	
MAIMYWK	1	Unmodified	941.45032	0.45031618	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		72.028	63.567	2	0.018295	34476	160513_QHF_FH_JSI11Kac_6	72.021	45.059			0.59331	0.62997	1.3536	2	0	Median	NaN	NaN	NaN	0	0	Median	0.53656	0.63603	NaN	1	0	Median	0.65607	0.62397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159570000	101200000	58378000	0	0	0	78339000	51123000	27216000	81236000	50074000	31162000	0	0	0	35692	2694	33788	219894;219895	296740;296741;296742	296741			3	
MAIQTQQSK	1	Oxidation (M)	1049.5175	0.51754412	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	6					4				1	1	5	3	8.693	5.6152	2	0.00016055	4832	160511_QHF_FH_JSI12i_1	93.162	53.516			0.86516	0.87129	53.468	10	4	Median	0.54095	0.43911	NaN	1	0	Median	1.3817	1.5736	NaN	1	1	Median	0.88338	0.85496	35.02	5	2	Median	0.84731	0.88794	73.092	3	1	Median	1128000000	642000000	486030000	227080000	134460000	92611000	25950000	9342700	16608000	819140000	470430000	348710000	55876000	27768000	28107000	35693	754	33789	219896;219897;219898;219899;219900;219901;219902;219903;219904;219905	296743;296744;296745;296746;296747;296748;296749;296750;296751;296752;296753;296754	296747		257	12	
MAIQTQQSK	1	Unmodified	1033.5226	0.5226295	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.44	4	4	2			1	3			3	3	3	5	15.472	12.959	2	3.1361E-06	10742	160511_QHF_FH_JSI9i_1	123.98	102.46			0.89668	0.96539	35.466	12	3	Median	1.1446	0.90362	46.943	3	1	Median	0.87117	1.0322	12.684	3	1	Median	0.86693	0.85589	30.67	3	0	Median	0.96856	1.0314	56.488	3	1	Median	5410200000	2893100000	2517100000	1182300000	466490000	715850000	1284300000	804570000	479740000	1511300000	768980000	742310000	1432200000	853020000	579200000	35694	754	33789	219906;219907;219908;219909;219910;219911;219912;219913;219914;219915;219916;219917;219918;219919	296755;296756;296757;296758;296759;296760;296761;296762;296763;296764;296765;296766;296767;296768;296769;296770;296771	296762			17	
MAISAVAGILK	1	Unmodified	1072.6315	0.63145166	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	78.747	78.26	2	0.000129	67950	160511_QHF_FH_JSI12i_3	96.034	76.556			0.55241	0.63079	16.1	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57331	0.70686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53227	0.56292	NaN	1	1	Median	68463000	42811000	25653000	0	0	0	9481200	5694100	3787100	0	0	0	58982000	37116000	21866000	35695	2588	33790	219920;219921	296772;296773	296773			2	
MAKPEEVLVVENDQGEVVR	1	Unmodified	2140.0834	0.083418639	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		58.006	57.503	3	3.647E-11	50403	160511_QHF_FH_JSI9i_2	103.41	86.925			0.81346	0.8262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81346	0.8262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	261480000	103570000	157900000	0	0	0	0	0	0	261480000	103570000	157900000	0	0	0	35696	231	33791	219922;219923;219924	296774;296775;296776	296774			3	
MAKPEEVLVVENDQGEVVREFMK	2	Unmodified	2675.3299	0.32987327	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			4									2	2	83.716	83.62	3;4	1.8799E-08	74679	160511_QHF_FH_JSI11i_3	98.199	90.839			0.73422	0.72093	25.713	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95589	0.88659	0.20508	2	1	Median	0.56062	0.56917	4.3785	2	2	Median	159750000	91986000	67761000	0	0	0	0	0	0	116020000	61553000	54470000	43723000	30433000	13290000	35697	231	33792	219925;219926;219927;219928	296777;296778;296779;296780	296778			4	
MAKPPSDIQEIELR	1	Unmodified	1625.8447	0.84469192	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		53.237	53.237	3	0.0033201	47143	160511_QHF_FH_JSI11i_3	58.079	35.541			1.3906	1.269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3906	1.269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70936000	33353000	37583000	0	0	0	0	0	0	70936000	33353000	37583000	0	0	0	35698	3811	33793	219929	296781	296781			1	
MALALLDAVR	0	Unmodified	1071.6111	0.61105057	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	83.219	82.694	2	0.00036493	72932	160511_QHF_FH_JSI9i_2	76.827	72.417			1.2058	1.1492	104.64	6	2	Median	1.5303	1.3194	NaN	1	0	Median	0.78103	0.95434	NaN	1	0	Median	1.5208	1.4798	55.282	2	1	Median	2.9029	3.1066	200.2	2	1	Median	182000000	85791000	96206000	24593000	8461800	16132000	32453000	17159000	15294000	73545000	34086000	39459000	51406000	26084000	25322000	35699	1088	33794	219930;219931;219932;219933;219934;219935	296782;296783;296784;296785;296786;296787;296788;296789	296785			8	
MALDNLLANLPPAK	1	Unmodified	1479.8119	0.81193523	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.985	97.725	3	0.0018854	84157	160511_QHF_FH_JSI12i_2	50.897	45.618			1.0042	1.045	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0042	1.045	NaN	1	0	Median	8826400	3328100	5498400	0	0	0	0	0	0	2177800	0	2177800	6648600	3328100	3320600	35700	2591	33795	219936;219937;219938	296790;296791;296792;296793	296791			4	
MALDNLLANLPPAKPGK	2	Unmodified	1761.9811	0.98112582	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	88.583	87.991	3	9.8977E-05	78637	160511_QHF_FH_JSI11i_3	71.354	60.719			0.93618	0.98218	8.8613	4	4	Median	1.1457	0.98206	NaN	1	1	Median	0.83532	0.98231	NaN	1	1	Median	0.88365	0.84151	NaN	1	1	Median	0.99183	1.0318	NaN	1	1	Median	100380000	52843000	47536000	9331200	5035200	4296000	15130000	9312900	5816700	26626000	13700000	12926000	49291000	24795000	24497000	35701	2591	33796	219939;219940;219941;219942;219943;219944	296794;296795;296796;296797;296798;296799;296800;296801	296796			8	
MALELLTQEFGIPIER	0	Unmodified	1858.9863	0.98627078	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.01	101.91	3	3.9309E-22	87812	160511_QHF_FH_JSI12i_2	130.06	118.33			1.1241	1.2477	7.7196	4	0	Median	1.6357	1.3733	NaN	1	0	Median	1.0746	1.3097	NaN	1	0	Median	1.1758	1.1887	NaN	1	0	Median	1.0325	1.1692	NaN	1	0	Median	1167000000	541620000	625410000	233860000	84345000	149510000	264700000	128150000	136540000	377850000	181740000	196110000	290630000	147380000	143250000	35702	1664	33797	219945;219946;219947;219948	296802;296803;296804;296805;296806	296803			5	
MALFAGGK	1	Unmodified	793.41565	0.41564523	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.8	5.6		4							1	2	1	2		45.617	40.237	2	0.0045613	21935	160513_QHF_FH_JSI11Kac_6	81.381	66.16			0.92096	0.84606	4.4473	2	1	Median	0.93338	0.81987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90871	0.87309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136010000	74212000	61793000	126650000	69095000	57558000	0	0	0	9352800	5117700	4235200	0	0	0	35703	3296	33798	219949;219950;219951;219952;219953	296807;296808;296809;296810;296811	296807			5	
MALIGLGVSHPVLK	1	Unmodified	1433.8428	0.84284142	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.35		7	9						8	7	6	6	5	74.191	70.728	2;3	3.9868E-56	36529	160513_QHF_FH_JSI9Kac_6	180.09	171.68			1.4562	1.279	15.865	23	0	Linear	1.2481	1.0253	16.47	6	0	Median	0.88438	1.0378	16.19	6	0	Median	1.331	1.2467	20.826	6	0	Linear	0.8673	1.0725	10.993	5	0	Linear	8958900000	4083500000	4875400000	1916600000	768170000	1148400000	2290900000	1149500000	1141400000	2263400000	997330000	1266100000	2488100000	1168600000	1319500000	35704	1216	33799	219954;219955;219956;219957;219958;219959;219960;219961;219962;219963;219964;219965;219966;219967;219968;219969;219970;219971;219972;219973;219974;219975;219976;219977	296812;296813;296814;296815;296816;296817;296818;296819;296820;296821;296822;296823;296824;296825;296826;296827;296828;296829;296830;296831;296832;296833;296834;296835;296836;296837;296838;296839;296840;296841;296842;296843;296844;296845;296846;296847;296848;296849;296850;296851;296852;296853;296854;296855;296856;296857;296858;296859;296860;296861;296862;296863;296864;296865;296866	296851			54	
MALIGLGVSHPVLK	1	Oxidation (M)	1449.8378	0.83775605	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	5	2	2	3	66.555	60.92	2;3	0.00032653	49862	160511_QHF_FH_JSI9i_3	88.441	81.908			1.1447	1.0867	16.804	11	1	Median	1.2832	1.0867	16.417	5	0	Median	0.89786	1.0284	NaN	1	0	Median	0.98605	0.95842	21.396	2	0	Median	1.1447	1.1966	18.289	3	1	Median	311640000	141530000	170110000	119880000	52868000	67013000	28586000	15394000	13191000	62473000	28290000	34182000	100700000	44975000	55724000	35705	1216	33799	219978;219979;219980;219981;219982;219983;219984;219985;219986;219987;219988;219989	296867;296868;296869;296870;296871;296872;296873;296874;296875;296876;296877;296878	296873		847	12	
MALLASNSCFIR	0	Unmodified	1381.6846	0.68462622	2530	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	70.105	69.956	2	0.012654	60628	160511_QHF_FH_JSI12i_3	54.608	46.962			1.1676	1.1757	2.8498	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2694	1.1997	NaN	1	0	Median	1.074	1.1523	NaN	1	1	Median	43651000	23051000	20600000	0	0	0	0	0	0	23347000	11833000	11514000	20305000	11218000	9086700	35706	2530	33800	219990;219991	296879;296880	296880			1	
MALLATVLGRF	0	Unmodified	1190.6845	0.68454987	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		94.746	86.462	2	6.5961E-11	48550	160513_QHF_FH_JSI9Kac_6	138.4	114.17			1.354	1.1953	35.943	4	2	Median	1.354	1.1547	38.238	2	2	Median	0.80045	0.94413	NaN	1	0	Median	1.8908	1.8429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	503910000	232410000	271500000	182070000	82790000	99279000	226200000	120580000	105620000	95645000	29041000	66604000	0	0	0	35707	1296	33801	219992;219993;219994;219995	296881;296882;296883;296884;296885	296883			5	
MALLATVLGRF	0	Oxidation (M)	1206.6795	0.67946449	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			88.672	82.951	2	0.0070761	46931	160513_QHF_FH_JSI10Kac_6	64.04	48.378			0.62656	0.73251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62656	0.73251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24429000	13411000	11018000	0	0	0	24429000	13411000	11018000	0	0	0	0	0	0	35708	1296	33801	219996	296886	296886		937	1	
MALLMAEMSR	0	Unmodified	1151.5501	0.55010658	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.787	68.491	2	0.03654	59027	160511_QHF_FH_JSI12i_2	46.001	31.795			0.37793	0.40236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37793	0.40236	NaN	1	1	Median	26181000	18842000	7339000	0	0	0	0	0	0	0	0	0	26181000	18842000	7339000	35709	1139	33802	219997	296887	296887			1	
MALNHPYFNDLDNQIK	1	Unmodified	1931.92	0.91998213	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.48		8	4						3	3	2	5	5	67.238	64.885	2;3	1.6601E-21	57910	160511_QHF_FH_JSI11i_3	185.27	162.35			0.96133	0.92274	15.44	15	0	Median	0.9859	0.82046	7.3312	3	0	Plateau	0.77276	0.94746	3.7389	2	0	Median	0.87786	0.90317	17.326	5	0	Median	1.0802	1.1554	17.196	5	0	Median	5070500000	2371400000	2699200000	675610000	308540000	367070000	941070000	468450000	472620000	1990100000	882440000	1107700000	1463700000	711940000	751770000	35710	850	33803	219998;219999;220000;220001;220002;220003;220004;220005;220006;220007;220008;220009;220010;220011;220012	296888;296889;296890;296891;296892;296893;296894;296895;296896;296897;296898;296899;296900;296901;296902;296903;296904;296905;296906;296907;296908;296909;296910;296911;296912;296913;296914;296915;296916;296917;296918	296893			31	
MALPELVR	0	Unmodified	927.52117	0.52117293	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	2	2	64.707	63.835	2	0.0011574	55668	160511_QHF_FH_JSI11i_2	93.262	35.703			0.9094	0.97447	8.8965	8	1	Median	1.1068	0.91483	9.59	2	0	Median	0.85685	1.0669	13.586	3	1	Plateau	1.022	1.0008	1.3281	2	0	Median	0.86073	0.96995	NaN	1	0	Median	1350500000	644350000	706150000	244830000	112570000	132260000	353130000	177430000	175700000	494260000	229190000	265070000	258270000	125160000	133120000	35711	1573	33804	220013;220014;220015;220016;220017;220018;220019;220020;220021	296919;296920;296921;296922;296923;296924;296925;296926;296927;296928;296929;296930;296931;296932	296929			14	
MALSFVQR	0	Unmodified	950.50077	0.50077184	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	1	2	53.142	52.088	2	0.00035112	44600	160511_QHF_FH_JSI12i_3	131.04	82.276			0.9207	0.86564	26.993	6	3	Median	1.3171	1.1029	28.895	2	1	Median	1.1443	1.301	NaN	1	1	Median	0.82936	0.83346	NaN	1	0	Median	0.70864	0.74937	8.8048	2	1	Median	1026200000	496800000	529450000	291580000	138520000	153060000	166570000	77948000	88622000	122250000	58999000	63251000	445850000	221330000	224520000	35712	2349	33805	220022;220023;220024;220025;220026;220027	296933;296934;296935;296936;296937;296938;296939;296940;296941	296941			9	
MALTLLDYLFHR	0	Unmodified	1491.7908	0.79080585	3577	Q8N9N5	BANP	Protein BANP	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.316	87.013	3	6.7462E-14	49412	160513_QHF_FH_JSI11Kac_6	132.32	121.11			1.2306	1.0063	11.34	3	0	Plateau	1.1026	0.94607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2306	1.1787	NaN	1	0	Median	0.94889	1.0063	NaN	1	0	Median	333190000	148370000	184820000	105290000	48532000	56759000	0	0	0	125240000	42018000	83220000	102660000	57817000	44846000	35713	3577	33806	220028;220029;220030	296942;296943;296944	296942			2	
MALVLEALPQIAAK	1	Unmodified	1466.8531	0.85307176	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.86	100.73	3	9.6168E-05	88419	160511_QHF_FH_JSI11i_2	96.64	86.315			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12369000	12369000	0	0	0	0	0	0	0	12369000	12369000	0	0	0	0	35714	2523	33807	220031	296945	296945			1	
MALYDEDLLK	1	Unmodified	1209.5951	0.59512574	4186	Q96NW4	ANKRD27	Ankyrin repeat domain-containing protein 27	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.8	6.37			2						3	1		2	2	39.5	33.838	3	0.04124	18703	160513_QHF_FH_JSI11Kac_6	17.026	0.39376			0.85185	0.8378	15.977	5	0	Median	1.1441	1.004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86955	0.83611	1.5476	2	0	Median	0.68813	0.73352	18.799	2	0	Median	299470000	167060000	132410000	28365000	11841000	16524000	0	0	0	149360000	75865000	73490000	121750000	79359000	42392000	35715	4186	33808	220032;220033;220034;220035;220036	296946;296947	296947			2	
MAMLQEEPVIVK	1	Unmodified	1386.7251	0.72509405	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			67.136	66.308	2	0.01197	58858	160511_QHF_FH_JSI10i_2	55.353	45.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10037000	10037000	0	0	0	0	10037000	10037000	0	0	0	0	0	0	0	35716	2899	33809	220037	296948	296948			1	
MANEKHSK	2	Acetyl (K)	985.46511	0.46511462	5751	Q9Y6X1;Q8N6R1	SERP1;SERP2	Stress-associated endoplasmic reticulum protein 1;Stress-associated endoplasmic reticulum protein 2	yes	no	1	0	0	1		By matching	By MS/MS	By matching	15	0								3			1	1	1	4.9413	-4.5212	3	0.0026706	1496	160513_QHF_FH_JSI11Kac_5	67.334	58.357			0.51261	0.94686	38.079	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81025	0.96111	NaN	1	0	Median	0.49534	0.49334	NaN	1	0	Median	0.8649	0.94686	NaN	1	0	Median	49318000	32618000	16699000	0	0	0	15065000	8999400	6065700	22301000	16406000	5895500	11952000	7213500	4738300	35717	5751	33810	220038;220039;220040	296949	296949	3549		1	
MANITSSQILDQLK	1	Unmodified	1560.8181	0.81814282	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.01	77.181	2	0.0001961	66633	160511_QHF_FH_JSI12i_2	113.61	93.95			0.77895	0.75263	19.227	4	1	Median	0.79166	0.69416	NaN	1	0	Median	0.46239	0.56349	NaN	1	0	Median	0.81996	0.81603	NaN	1	1	Median	0.76646	0.86582	NaN	1	0	Median	107140000	64609000	42534000	17665000	10476000	7188900	22876000	16989000	5886600	30385000	15204000	15181000	36217000	21939000	14277000	35718	2950	33811	220041;220042;220043;220044	296950;296951;296952;296953	296950			4	
MANVLDEPGQDLEADFPK	1	Unmodified	1987.9197	0.91970735	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	83.202	82.528	2	2.5065E-09	73380	160511_QHF_FH_JSI9i_1	133.71	117.18			0.91224	0.91201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91224	0.91201	NaN	1	0	Median	23740000	11692000	12049000	7012300	0	7012300	0	0	0	0	0	0	16728000	11692000	5036400	35719	2515	33812	220045;220046;220047;220048	296954;296955;296956;296957;296958	296958			5	
MAPAEILNGK	1	Acetyl (Protein N-term)	1084.5587	0.55868065	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				73.897	72.979	2	1.9658E-05	64958	160511_QHF_FH_JSI9i_1	69.812	65.877			0.9192	0.7568	NaN	1	0	Median	0.9192	0.7568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54206000	34069000	20137000	54206000	34069000	20137000	0	0	0	0	0	0	0	0	0	35720	1004	33813	220049	296959	296959			1	
MAPALSGANLTSPR	0	Unmodified	1384.7133	0.71328381	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.06	1	4	3					1		2	1	3	3	49.931	49.276	2	9.8414E-30	42237	160511_QHF_FH_JSI12i_2	186.74	162.48			1.0215	1.0256	32.208	7	3	Median	1.1257	0.98889	NaN	1	0	Median	0.9147	1.1077	NaN	1	1	Median	1.0215	1.0256	47.328	3	1	Median	1.0969	1.1655	38.271	2	1	Median	817560000	414480000	403080000	126690000	62113000	64573000	142410000	72540000	69873000	374450000	186390000	188070000	174010000	93438000	80571000	35721	5474	33814	220050;220051;220052;220053;220054;220055;220056;220057;220058	296960;296961;296962;296963;296964;296965;296966;296967;296968;296969	296963			10	
MAPDHEK	1	Unmodified	826.36434	0.36433794	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	4.7337	4.3421	2	0.0091276	2345	160511_QHF_FH_JSI10i_2	84.244	52.13			1.3581	1.5043	41.223	4	3	Median	2.2119	1.8605	NaN	1	1	Median	1.0761	1.3003	NaN	1	1	Median	1.714	1.7403	NaN	1	1	Median	0.67157	0.7525	NaN	1	0	Median	1166800000	464080000	702770000	235730000	55163000	180570000	229610000	111480000	118130000	446460000	134210000	312260000	255030000	163220000	91807000	35722	4294	33815	220059;220060;220061;220062	296970;296971;296972;296973;296974	296974			5	
MAPEVLPK	1	Unmodified	883.48372	0.48372479	938	P09669	COX6C	Cytochrome c oxidase subunit 6C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	37.285	36.738	2	0.0027585	32791	160511_QHF_FH_JSI10i_1	77.674	67.687			0.8574	0.93193	18.58	4	0	Median	NaN	NaN	NaN	0	0	Median	0.69197	0.84002	28.892	2	0	Median	0.88633	0.87048	NaN	1	0	Median	0.95537	0.99772	NaN	1	0	Median	580600000	293150000	287450000	0	0	0	234590000	115940000	118660000	191340000	96345000	94993000	154660000	80864000	73800000	35723	938	33816	220063;220064;220065;220066	296975;296976;296977;296978;296979;296980	296979			6	
MAPGQLALFSVSDK	1	Unmodified	1462.749	0.74900062	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	80.317	79.632	2	0.0004623	70802	160511_QHF_FH_JSI10i_2	71.555	55.664			0.94873	0.95568	21.784	5	3	Median	1.1981	1.0529	NaN	1	1	Median	0.62609	0.76704	NaN	1	0	Median	0.94873	0.95568	NaN	1	1	Median	0.92492	0.99146	36.036	2	1	Median	93472000	47258000	46214000	12816000	5421100	7394500	23524000	14962000	8561700	24212000	9839600	14372000	32920000	17035000	15886000	35724	1381	33817	220067;220068;220069;220070;220071;220072	296981;296982;296983;296984;296985;296986;296987;296988	296985			8	
MAPPASR	0	Unmodified	728.36394	0.36394401	5726	Q9Y6H1;Q5T1J5	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.44	5.14	3	3	1				2			2	3	3	1	10.312	8.1095	2	0.0091124	6975	160511_QHF_FH_JSI9i_2	80.555	18.217			1.1326	1.1368	18.573	9	0	Median	1.4694	1.2487	8.9901	2	0	Median	1.1432	1.3603	11.617	3	0	Plateau	1.1155	1.1256	0.87734	3	0	Plateau	0.70859	0.74827	NaN	1	0	Median	1719300000	798010000	921320000	360310000	154630000	205680000	659430000	316660000	342770000	640570000	295150000	345420000	59022000	31563000	27459000	35725	5726	33818	220073;220074;220075;220076;220077;220078;220079;220080;220081	296989;296990;296991;296992;296993;296994	296992			6	
MAPSAEER	0	Unmodified	889.39637	0.39636635	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	8.9148	7.7154	2	0.0030879	5997	160511_QHF_FH_JSI11i_1	75.189	64.373			1.028	1.0468	21.989	9	1	Median	1.3065	1.1231	9.9567	2	0	Median	0.86845	1.0469	23.915	2	0	Median	1.1226	1.0845	34.152	3	1	Median	0.83181	0.88318	13.908	2	0	Median	1335400000	594170000	741270000	263500000	113070000	150430000	339640000	154360000	185290000	376670000	155680000	220990000	355620000	171060000	184550000	35726	5552	33819	220082;220083;220084;220085;220086;220087;220088;220089;220090	296995;296996;296997;296998;296999;297000;297001;297002;297003	296995			9	
MAPSETHGAAAIFK	1	Unmodified	1429.7024	0.70238478	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	39.005	38.339	2;3	4.8499E-05	33453	160511_QHF_FH_JSI11i_3	106.29	91.731			0.95193	1.0208	33.078	10	3	Median	1.0063	0.85419	37.335	2	0	Median	0.82147	1.0208	0.47904	2	0	Median	1.0012	1.0099	31.475	3	1	Median	1.0261	1.1108	47.224	3	2	Median	1446300000	641980000	804330000	193950000	74887000	119070000	345840000	193370000	152470000	635700000	266280000	369420000	270810000	107430000	163380000	35727	5161	33820	220091;220092;220093;220094;220095;220096;220097;220098;220099;220100	297004;297005;297006;297007;297008;297009;297010;297011;297012;297013	297004			9	
MAPSVEK	1	Unmodified	760.37893	0.37892537	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.789	12.529	2	0.012734	10258	160511_QHF_FH_JSI10i_1	68.915	51.067			0.95814	1.0129	47.277	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0387	1.2158	NaN	1	0	Median	0.95814	0.93717	NaN	1	0	Median	2.2223	2.3455	NaN	1	1	Median	709490000	324810000	384680000	0	0	0	237170000	131660000	105520000	256010000	107320000	148700000	216300000	85833000	130470000	35728	2517	33821	220101;220102;220103	297014;297015;297016;297017	297017			4	
MAPVGVEKK	2	Unmodified	957.53174	0.53173762	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		13.049	13.049	3	0.039453	10531	160511_QHF_FH_JSI11i_3	28.727	17.854			2.1564	1.9378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1564	1.9378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33985000	12898000	21086000	0	0	0	0	0	0	33985000	12898000	21086000	0	0	0	35729	312	33822	220104	297018	297018			1	
MAPVPLDDSNRPASLTK	1	Unmodified	1810.9247	0.92473315	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.658	3	9	4							2	4	5	5	50.124	49.45	2;3	9.4963E-07	43579	160511_QHF_FH_JSI10i_2	96.993	90.555			0.91005	0.90476	17.709	16	3	Median	1.058	0.89965	1.3104	2	0	Median	0.88909	1.0678	22.061	4	2	Median	0.94394	0.9622	21.274	5	1	Median	0.85772	0.89835	9.8353	5	0	Median	3218700000	1717900000	1500800000	358400000	176140000	182270000	546060000	305290000	240760000	1306300000	722290000	584040000	1007900000	514140000	493780000	35730	5124	33823	220105;220106;220107;220108;220109;220110;220111;220112;220113;220114;220115;220116;220117;220118;220119;220120	297019;297020;297021;297022;297023;297024;297025;297026;297027;297028;297029;297030;297031;297032;297033;297034;297035;297036;297037;297038;297039;297040;297041;297042;297043;297044;297045	297037			27	
MAPYQGPDAVPGALDYK	1	Unmodified	1791.8502	0.85017123	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.272	65.671	2;3	1.7982E-15	58518	160511_QHF_FH_JSI9i_1	174.95	168.25			0.77162	0.86036	47.324	8	0	Median	0.5696	0.46782	3.8592	2	0	Median	0.55228	0.65435	15.722	2	0	Median	1.5014	1.4816	9.5498	2	0	Median	0.98742	1.0264	1.9676	2	0	Median	2169400000	1122700000	1046700000	562480000	360550000	201930000	487600000	296500000	191100000	583890000	219920000	363980000	535420000	245740000	289680000	35731	361	33824	220121;220122;220123;220124;220125;220126;220127;220128	297046;297047;297048;297049;297050;297051;297052;297053;297054;297055;297056;297057;297058;297059;297060;297061;297062;297063;297064;297065;297066;297067;297068;297069	297067			24	
MAPYQGPDAVPGALDYK	1	Oxidation (M)	1807.8451	0.84508585	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	60.457	59.353	2	0.012705	52686	160511_QHF_FH_JSI9i_1	62.088	38.483			0.66951	0.53919	NaN	1	1	Median	0.66951	0.53919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19305000	12234000	7070600	19305000	12234000	7070600	0	0	0	0	0	0	0	0	0	35732	361	33824	220129;220130;220131	297070;297071;297072	297072		140	3	
MAQALEELR	0	Unmodified	1059.5383	0.53827956	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	41.965	41.015	2	0.00023016	35094	160511_QHF_FH_JSI12i_2	99.802	66.252			0.94824	0.9075	173.22	6	6	Median	3.4365	2.8651	NaN	1	1	Median	0.11073	0.13419	NaN	1	1	Median	0.93271	0.93979	232.64	2	2	Median	1.1386	1.2652	209.58	2	2	Median	534200000	231130000	303070000	63618000	4093700	59525000	73253000	59729000	13524000	227840000	94881000	132960000	169490000	72424000	97066000	35733	2207	33825	220132;220133;220134;220135;220136;220137	297073;297074;297075;297076;297077;297078	297073			6	
MAQELKYGDIVER	1	Acetyl (K)	1592.7868	0.78684269	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	1	0	0	1		By MS/MS			14	0							2				2			69.118	58.461	2	0.00024529	31470	160513_QHF_FH_JSI10Kac_4	89.403	68.533			1.1184	1.3211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.3211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2835700	1365100	1470600	0	0	0	2835700	1365100	1470600	0	0	0	0	0	0	35734	207	33826	220138;220139	297079;297080	297079	112		2	
MAQELYMEQK	1	Unmodified	1269.5733	0.57334444	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.48	5	6					1			2	3	3	4	36.64	34.917	2	3.2623E-11	31131	160511_QHF_FH_JSI10i_1	150.35	116.97			0.9579	0.93104	48.975	10	6	Median	1.1958	1.0094	38.97	2	1	Median	0.74197	0.88917	51.501	3	2	Median	1.0897	1.063	12.232	2	0	Median	0.57875	0.63284	76.959	3	3	Median	2991900000	1495900000	1496000000	543160000	261380000	281780000	700040000	378900000	321140000	651760000	347110000	304650000	1096900000	508490000	588420000	35735	1867	33827	220140;220141;220142;220143;220144;220145;220146;220147;220148;220149;220150;220151	297081;297082;297083;297084;297085;297086;297087;297088;297089;297090;297091;297092;297093;297094;297095;297096;297097;297098	297090			18	
MAQELYMEQK	1	Oxidation (M)	1285.5683	0.56825906	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	26.009	25.353	2	0.001389	21473	160511_QHF_FH_JSI11i_1	82.261	61.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35736	1867	33827	220152;220153;220154	297099;297100;297101	297099		1551;1552	3	
MAQEVLTHLK	1	Unmodified	1168.6274	0.62742892	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.86		16	9						8	9	7	8	9	40.204	37.394	2;3	8.6914E-06	31982	160511_QHF_FH_JSI11i_2	115.78	98.396			5.4048	4.7911	245.86	28	28	Median	1.0838	0.91902	272.29	6	6	Median	6.6369	7.9524	273.2	7	7	Median	5.0573	4.758	216.99	8	8	Median	6.9428	6.9156	272.13	7	7	Median	3085400000	1456700000	1628700000	452120000	164820000	287300000	764650000	414690000	349960000	1177500000	552900000	624610000	691090000	324270000	366820000	35737	231	33828	220155;220156;220157;220158;220159;220160;220161;220162;220163;220164;220165;220166;220167;220168;220169;220170;220171;220172;220173;220174;220175;220176;220177;220178;220179;220180;220181;220182;220183;220184;220185;220186;220187	297102;297103;297104;297105;297106;297107;297108;297109;297110;297111;297112;297113;297114;297115;297116;297117;297118;297119;297120;297121;297122;297123;297124;297125;297126;297127;297128;297129;297130;297131;297132;297133;297134;297135;297136	297122			35	
MAQEVLTHLK	1	Oxidation (M)	1184.6223	0.62234354	231	O14980	XPO1	Exportin-1	yes	yes	0	0	1	0	By MS/MS				2	0		1								1				38.436	37.39	3	0.0033624	32603	160511_QHF_FH_JSI9i_2	56.225	46.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15562000	0	15562000	15562000	0	15562000	0	0	0	0	0	0	0	0	0	35738	231	33828	220188	297137	297137		101	1	
MAQEVLTHLKEHPDAWTR	1	Acetyl (K)	2203.0844	0.084421691	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.78	64.424	4	0.00020223	34940	160513_QHF_FH_JSI11Kac_6	89.011	78.377			0.21599	0.21322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21599	0.21322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24873000	22067000	2806100	0	0	0	0	0	0	24873000	22067000	2806100	0	0	0	35739	231	33829	220189	297138	297138	127		1	
MAQFDAK	1	Unmodified	809.37417	0.37417435	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	5	6	5	1				3			4	5	3	3	18.67	16.476	2	0.0080028	10705	160513_QHF_FH_JSI11Kac_4	89.142	61.036			1.5102	1.6059	60.29	15	8	Median	1.3947	1.1234	69.159	4	1	Median	1.15	1.3719	76.568	5	4	Median	1.7889	1.7498	64.972	3	2	Median	1.5102	1.6059	39.785	3	1	Median	8954100000	3806300000	5147800000	2062300000	724440000	1337800000	3224300000	1459400000	1764900000	2042600000	855750000	1186900000	1624800000	766730000	858110000	35740	1284	33830	220190;220191;220192;220193;220194;220195;220196;220197;220198;220199;220200;220201;220202;220203;220204	297139;297140;297141;297142;297143;297144;297145;297146;297147;297148;297149;297150;297151;297152;297153;297154;297155	297146			17	
MAQFDAK	1	Oxidation (M)	825.36909	0.36908897	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	13.1	6.0738	2	0.046346	5499	160513_QHF_FH_JSI12Kac_3	48.561	25.542			1.2042	1.3323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2042	1.3323	NaN	1	0	Median	5398000	2838100	2560000	0	0	0	0	0	0	0	0	0	5398000	2838100	2560000	35741	1284	33830	220205	297156	297156			1	
MAQFDAKK	2	Unmodified	937.46914	0.46913736	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							2	3	7	3	12.042	11.801	2;3	0.0011642	8897	160511_QHF_FH_JSI12i_3	93.429	65.942			0.8832	0.86578	89.926	12	10	Median	6.0903	5.1572	NaN	1	1	Median	0.86174	1.0548	83.085	2	2	Median	0.63947	0.59408	90.353	6	6	Median	1.3619	1.3711	65.54	3	1	Plateau	2738400000	1456000000	1282400000	71326000	19940000	51386000	255250000	132420000	122830000	909200000	483500000	425700000	1502600000	820110000	682520000	35742	1284	33831	220206;220207;220208;220209;220210;220211;220212;220213;220214;220215;220216;220217;220218;220219;220220	297157;297158;297159;297160;297161;297162;297163;297164;297165;297166;297167;297168;297169;297170;297171;297172	297172			16	
MAQFDAKK	2	Acetyl (K)	979.4797	0.47970205	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		34.327	25.089	2	0.031713	15513	160513_QHF_FH_JSI11Kac_4	85.161	70.385			0.3137	0.30992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3137	0.30992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125450000	89030000	36418000	0	0	0	0	0	0	125450000	89030000	36418000	0	0	0	35743	1284	33831	220221	297173	297173	1209		1	
MAQFDAKK	2	Acetyl (K);Oxidation (M)	995.47462	0.47461667	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	23.702	16.578	2	0.038047	10227	160513_QHF_FH_JSI12Kac_3	49.418	32.032			1.0069	1.0965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0069	1.0965	NaN	1	1	Median	3477700	2421900	1055900	0	0	0	0	0	0	0	0	0	3477700	2421900	1055900	35744	1284	33831	220222	297174	297174	1209		1	
MAQGYKNK	2	Acetyl (K)	980.47495	0.47495102	5814				yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							4				2	2		29.902	20.679	2	0.028371	13387	160513_QHF_FH_JSI11Kac_4	57.811	25.856	+		0.91699	1.0989	3.5848	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.91699	1.0989	0	2	0	Median	1.1902	1.1692	0	2	0	Median	NaN	NaN	NaN	0	0	Median	228920000	125900000	103020000	0	0	0	114660000	65983000	48677000	114260000	59922000	54342000	0	0	0	35745	5814	33832	220223;220224;220225;220226	297175;297176	297176	3569		2	
MAQGYKNK	2	Acetyl (K);Oxidation (M)	996.46987	0.46986564	5814				yes	yes	1	0	1	1				By MS/MS	13.7	0.471						1	2						3	20.195	12.819	2	0.0041181	8589	160513_QHF_FH_JSI12Kac_4	76.847	27.488	+		0.86529	0.93896	4.2662	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86529	0.93896	4.2662	3	0	Plateau	22520000	12254000	10266000	0	0	0	0	0	0	0	0	0	22520000	12254000	10266000	35746	5814	33832	220227;220228;220229	297177	297177	3569	2758	1	
MAQYAQR	0	Unmodified	866.40687	0.40687146	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	8.3499	7.9179	2	0.014647	5618	160511_QHF_FH_JSI12i_2	65.897	38.935			0.73104	0.80818	6.4672	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73104	0.87876	NaN	1	0	Median	0.77293	0.80818	NaN	1	0	Median	0.71626	0.77376	NaN	1	0	Median	187580000	109490000	78091000	0	0	0	52780000	30485000	22295000	78263000	47597000	30667000	56536000	31406000	25130000	35747	5523	33833	220230;220231;220232	297178	297178			1	
MAQYLEEER	0	Unmodified	1167.523	0.52302343	2727	Q16204	CCDC6	Coiled-coil domain-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	3	3	2	27.94	27.337	2	0.00085786	23024	160511_QHF_FH_JSI11i_2	84.213	59.29			0.8413	0.88728	91.669	8	8	Median	7.8252	6.7958	NaN	1	1	Median	0.95053	1.1161	78.127	3	3	Plateau	0.50268	0.49068	67.481	3	3	Plateau	0.71257	0.8009	NaN	1	1	Median	356670000	180630000	176050000	28445000	3816300	24629000	158180000	78835000	79349000	139920000	77926000	61994000	30125000	20050000	10075000	35748	2727	33834	220233;220234;220235;220236;220237;220238;220239;220240;220241	297179;297180;297181;297182;297183;297184;297185;297186;297187	297186			9	
MASAPASYGSTTTK	1	Unmodified	1371.634	0.63403044	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		20.673	20.48	2	2.3817E-06	17654	160511_QHF_FH_JSI10i_1	128.28	112.4			1.0394	1.1128	10.239	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8731	1.0351	NaN	1	0	Median	1.2373	1.1964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151370000	76998000	74371000	0	0	0	74194000	42300000	31894000	77175000	34698000	42477000	0	0	0	35749	3785	33835	220242;220243	297188;297189;297190;297191;297192	297192			5	
MASATSSSQR	0	Unmodified	1024.4608	0.46075752	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	4.75	5.36	1	2					1					2	2	5.0794	2.9027	2	0.007945	2562	160511_QHF_FH_JSI11i_2	50.834	42.494			1.1086	1.1475	18.754	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.0276	12.83	2	0	Median	1.2378	1.3164	16.642	2	1	Median	224690000	109200000	115490000	0	0	0	0	0	0	77250000	40281000	36969000	147440000	68917000	78518000	35750	4259	33836	220244;220245;220246;220247	297193;297194;297195;297196;297197	297197			5	
MASCLEVLDLFLNQPHMVLSSFVLAEK	1	Unmodified	3090.5592	0.55922128	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			99.743	94.023	3;4	3.2913E-116	55270	160513_QHF_FH_JSI10Kac_6	236.26	213.05			0.95613	1.1256	4.9498	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95613	1.1256	4.9498	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	623710000	323090000	300630000	0	0	0	623710000	323090000	300630000	0	0	0	0	0	0	35751	1650	33837	220248;220249	297198;297199;297200	297198			3	
MASEREGSGSSGTGEQK	1	Unmodified	1696.7322	0.73224093	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.539	1	7	2							2	3	2	3	5.2875	4.9716	2;3	3.5489E-08	2974	160511_QHF_FH_JSI10i_2	134.4	111.26			0.93712	0.94628	59.318	9	0	Median	2.533	2.1988	18.751	2	0	Median	1.3742	1.6918	33.464	2	0	Median	0.62083	0.60694	25.284	2	0	Median	0.80228	0.85999	24.607	3	0	Plateau	698290000	295020000	403270000	147130000	27597000	119530000	250250000	92111000	158140000	123730000	67665000	56066000	177190000	107650000	69538000	35752	1480	33838	220250;220251;220252;220253;220254;220255;220256;220257;220258;220259	297201;297202;297203;297204;297205;297206;297207;297208;297209	297206			9	
MASGAANVVGPK	1	Unmodified	1100.5648	0.56482866	3833	Q92520	FAM3C	Protein FAM3C	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	22.978	22.236	2	0.0001414	18398	160511_QHF_FH_JSI12i_2	84.213	74.999			0.47074	0.54032	87.243	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24958	0.29157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88788	1.0013	NaN	1	0	Median	102120000	74550000	27575000	0	0	0	72461000	58121000	14339000	0	0	0	29664000	16428000	13236000	35753	3833	33839	220260;220261	297210;297211	297210			2	
MASGHAFQPDLVK	1	Unmodified	1399.6918	0.69182009	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	39.57	38.941	2;3	1.8383E-09	34048	160511_QHF_FH_JSI11i_3	108.7	94.49			1.5513	1.56	33.088	4	4	Median	NaN	NaN	NaN	0	0	Median	0.93039	1.1674	NaN	1	1	Median	1.862	1.721	NaN	1	1	Median	1.8	1.8921	41.194	2	2	Median	395450000	157340000	238110000	0	0	0	106340000	38775000	67565000	113510000	52807000	60701000	175610000	65762000	109840000	35754	3335	33840	220262;220263;220264;220265;220266	297212;297213;297214;297215;297216;297217	297213			6	
MASGHAFQPDLVKR	1	Acetyl (K)	1597.8035	0.8034958	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			52.297	43.698	3	0.032592	24035	160513_QHF_FH_JSI10Kac_6	53.491	46.609			0.90683	1.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90683	1.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17123000	8989000	8133900	0	0	0	17123000	8989000	8133900	0	0	0	0	0	0	35755	3335	33841	220267	297218	297218			1	
MASLYNIHLR	0	Unmodified	1216.6387	0.63866231	4052	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	2	1	1	58.934	53.865	3	0.00055753	29674	160513_QHF_FH_JSI10Kac_6	70.389	60.956			0.83871	0.87397	16.525	6	1	Median	1.2049	1.0128	13.98	2	1	Median	0.81002	0.93375	16.219	2	0	Median	0.79324	0.75823	NaN	1	0	Median	0.76097	0.75478	NaN	1	0	Median	130160000	64818000	65340000	36729000	14294000	22436000	49872000	29292000	20580000	10584000	7140000	3443900	32973000	14092000	18880000	35756	4052	33842	220268;220269;220270;220271;220272;220273	297219;297220;297221;297222	297222			3	
MASNIFGPTEEPQNIPK	1	Unmodified	1871.9087	0.90874874	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	2	3	3	64.385	63.677	2;3	2.0422E-15	57800	160511_QHF_FH_JSI11i_1	157.56	148.13			0.97267	1.2493	44.734	11	2	Linear	0.97267	0.79588	53.638	3	1	Median	0.87163	1.0237	7.7867	2	0	Median	1.1099	1.0744	67.738	3	1	Median	1.0064	1.0504	1.1337	3	0	Plateau	1821900000	892680000	929200000	401710000	203870000	197840000	387880000	186500000	201380000	564820000	268430000	296390000	467470000	233890000	233580000	35757	4795	33843	220274;220275;220276;220277;220278;220279;220280;220281;220282;220283;220284	297223;297224;297225;297226;297227;297228;297229;297230;297231;297232;297233;297234;297235;297236;297237;297238;297239;297240;297241;297242	297224			20	
MASNIFGTPEENQASWAK	1	Unmodified	1979.9047	0.90472599	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								4	3	3	3	67.839	67.045	2;3	1.5695E-42	58626	160511_QHF_FH_JSI11i_2	257.8	238.16			0.96328	1.0265	13.482	12	1	Median	0.92747	0.79161	24.704	3	1	Plateau	0.86035	1.0295	6.4225	3	0	Median	0.87043	0.91814	12.114	3	0	Plateau	0.98424	1.1056	5.9921	3	0	Plateau	2082600000	1045100000	1037500000	341280000	150540000	190740000	524680000	269290000	255390000	722010000	383960000	338050000	494590000	241320000	253270000	35758	5362	33844	220285;220286;220287;220288;220289;220290;220291;220292;220293;220294;220295;220296;220297	297243;297244;297245;297246;297247;297248;297249;297250;297251;297252;297253;297254;297255;297256;297257;297258;297259;297260;297261;297262;297263;297264;297265;297266;297267;297268;297269;297270;297271;297272;297273;297274	297266			32	
MASPPAPSPAPPAISPIIK	1	Unmodified	1841.0121	0.012091596	2153	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		75.137	74.524	3	0.043412	67767	160511_QHF_FH_JSI11i_1	26.237	16.18			2.0559	1.8121	113.65	2	2	Median	1.0119	0.81124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.1769	4.0476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43294000	18213000	25081000	24735000	13418000	11317000	0	0	0	18559000	4795500	13764000	0	0	0	35759	2153	33845	220298;220299	297275;297276	297275			2	
MASTFIGNSTAIQELFK	1	Unmodified	1856.9342	0.93423521	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.04		7	4						4	2	3	5	5	98.284	96.013	2;3	1.4512E-116	86686	160511_QHF_FH_JSI12i_2	272.54	39.71			0.87811	0.92913	15.019	15	0	Median	1.0633	0.91575	8.4977	2	0	Median	0.87032	1.0493	6.8883	3	0	Plateau	0.97233	0.91833	13.823	5	0	Median	0.8463	0.92913	22.641	5	0	Median	7246100000	3970900000	3275300000	333360000	167920000	165440000	1509200000	858610000	650620000	3308600000	1829900000	1478700000	2094900000	1114500000	980470000	35760	4440	33846	220300;220301;220302;220303;220304;220305;220306;220307;220308;220309;220310;220311;220312;220313;220314	297277;297278;297279;297280;297281;297282;297283;297284;297285;297286;297287;297288;297289;297290;297291;297292;297293;297294;297295	297280			19	
MASTFIGNSTAIQELFK	1	Oxidation (M)	1872.9291	0.92914983	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	99.037	98.895	2	6.3647E-22	86461	160511_QHF_FH_JSI12i_2	175.88	16.224			0.77267	0.8644	26.664	7	0	Median	0.71352	0.60963	NaN	1	0	Median	0.70345	0.85734	NaN	1	0	Median	0.87201	0.84303	40.619	2	0	Median	0.77267	0.8644	19.633	3	0	Plateau	289620000	160500000	129120000	39062000	21818000	17244000	35569000	21508000	14061000	74313000	37760000	36553000	140670000	79416000	61257000	35761	4440	33846	220315;220316;220317;220318;220319;220320;220321;220322	297296;297297;297298;297299;297300;297301;297302;297303;297304	297299		2472	8	
MASVTLSEAEK	1	Acetyl (Protein N-term)	1206.5802	0.58020395	2607	Q15024	EXOSC7	Exosome complex component RRP42	no	no	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	58.928	58.205	3	1			NaN	NaN			0.83899	0.93666	3.7495	3	0	Plateau	1.1736	0.93666	NaN	1	0	Median	0.83899	0.99881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88939	0.93537	NaN	1	0	Median	150840000	73613000	77223000	40111000	15230000	24881000	60270000	33693000	26577000	0	0	0	50456000	24691000	25765000	35762	2607	33847	220323;220324;220325					0	
MATADEIVK	1	Unmodified	976.48993	0.48993238	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		30.116	29.578	2	0.00069397	26333	160511_QHF_FH_JSI10i_1	86.67	42.862			1.3151	1.3026	37.147	4	3	Median	1.3633	1.1272	NaN	1	0	Median	0.85493	1.0163	55.729	2	2	Median	1.542	1.5052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	639780000	328240000	311530000	140980000	69394000	71586000	356690000	199600000	157090000	142110000	59253000	82856000	0	0	0	35763	2817	33848	220326;220327;220328;220329	297305;297306;297307;297308;297309	297307			5	
MATCSSDQSVK	1	Unmodified	1212.5115	0.51147246	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.2729	9.0299	2	8.0088E-08	6785	160511_QHF_FH_JSI10i_1	125.48	112.13			0.98082	1.164	15.453	3	1	Median	NaN	NaN	NaN	0	0	Median	0.98082	1.164	NaN	1	0	Median	0.97974	0.93463	NaN	1	1	Median	1.1766	1.2593	NaN	1	0	Median	121910000	68511000	53394000	0	0	0	43146000	24148000	18998000	38544000	23254000	15289000	40215000	21109000	19107000	35764	4042	33849	220330;220331;220332;220333	297310;297311;297312;297313;297314;297315	297313			6	
MATEVAADALGEEWK	1	Unmodified	1619.7501	0.75012283	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	10	8								5	6	3	4	70.442	69.776	2;3	1.5279E-21	63474	160511_QHF_FH_JSI11i_1	177.83	165.47			0.79038	0.82502	40.688	17	7	Median	1.1986	1.0165	24.249	5	2	Median	0.9229	1.0753	63.596	5	2	Median	0.73894	0.71427	3.5517	3	0	Median	0.71801	0.76855	22.607	4	3	Median	2184600000	1193800000	990820000	385320000	190610000	194710000	682600000	377180000	305410000	593350000	324760000	268590000	523340000	301240000	222100000	35765	2018	33850	220334;220335;220336;220337;220338;220339;220340;220341;220342;220343;220344;220345;220346;220347;220348;220349;220350;220351	297316;297317;297318;297319;297320;297321;297322;297323;297324;297325;297326;297327;297328;297329;297330;297331;297332;297333;297334;297335;297336;297337;297338;297339;297340;297341;297342	297317			27	
MATFEIDEK	1	Unmodified	1082.4954	0.49541169	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	2		1	46.061	45.245	2	1.9488E-07	41293	160511_QHF_FH_JSI12i_1	140.5	113.9			1.2697	1.4126	47.347	4	3	Median	0.9004	0.72358	NaN	1	1	Median	1.5816	1.9083	5.866	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0383	1.0899	NaN	1	0	Median	388410000	180470000	207940000	59606000	28681000	30924000	172060000	86601000	85455000	0	0	0	156750000	65187000	91559000	35766	1060	33851	220352;220353;220354;220355	297343;297344;297345;297346;297347	297344			5	
MATGIEDSELR	0	Unmodified	1220.5707	0.5707019	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.502	37.069	2	0.0016559	33376	160511_QHF_FH_JSI11i_1	75.387	53.301			1.2557	1.2603	7.1509	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2755	1.1982	NaN	1	1	Median	1.2363	1.3257	NaN	1	1	Median	93538000	42722000	50817000	0	0	0	0	0	0	49521000	23007000	26514000	44018000	19715000	24303000	35767	2456	33852	220356;220357	297348;297349	297348			2	
MATGIEDSELRR	0	Unmodified	1376.6718	0.67181293	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.35		6	1					2		1	3	3	2	32.434	29.35	2;3	1.927E-05	24908	160511_QHF_FH_JSI11i_2	125.56	78.672			1.106	1.1168	28.26	8	6	Median	1.3037	1.1007	NaN	1	1	Median	1.2083	1.4468	9.365	2	1	Median	1.101	1.1332	36.415	3	2	Median	0.8317	0.90938	17.394	2	2	Median	497730000	219560000	278160000	39764000	16243000	23521000	45390000	22058000	23332000	146130000	56570000	89560000	266440000	124690000	141750000	35768	2456	33853	220358;220359;220360;220361;220362;220363;220364;220365;220366	297350;297351;297352;297353;297354;297355;297356;297357	297354			8	
MATGLER	0	Unmodified	776.38507	0.38507338	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.12	5.44	1	4	1				1	1		4		2	2	16.076	13.359	2	0.0056711	8770	160513_QHF_FH_JSI11Kac_4	94.006	33.712			1.0694	0.97677	50.42	8	2	Median	1.0934	0.93122	35.445	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0489	1.0499	3.5514	2	0	Median	1.4788	1.6557	85.059	2	1	Median	3845500000	1863900000	1981600000	1243900000	508330000	735600000	0	0	0	1271400000	719370000	552070000	1330200000	636190000	693960000	35769	1765	33854	220367;220368;220369;220370;220371;220372;220373;220374	297358;297359;297360;297361;297362;297363	297360			6	
MATGLER	0	Oxidation (M)	792.37999	0.379988	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0			By MS/MS	By matching	2	0		2										1	1	14.551	14.014	2	0.042061	11052	160511_QHF_FH_JSI11i_2	53.351	19.836			1.4097	1.5071	43.401	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.082	1.1088	NaN	1	0	Median	1.8366	2.0484	NaN	1	0	Median	319250000	141400000	177850000	0	0	0	0	0	0	222360000	106180000	116180000	96886000	35224000	61661000	35770	1765	33854	220375;220376	297364	297364			1	
MATHTLITGLEEYVR	0	Unmodified	1732.8818	0.8818057	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	79.421	78.581	2;3	2.7221E-05	68267	160511_QHF_FH_JSI12i_2	91.207	73.805			0.98368	1.0607	14.955	7	4	Median	1.4044	1.209	7.8456	2	1	Median	0.77603	0.94249	7.19	2	1	Median	1.3316	1.3842	NaN	1	0	Median	0.97375	1.0503	1.3996	2	2	Median	208570000	102700000	105870000	40945000	18066000	22879000	60321000	29284000	31037000	39866000	17155000	22711000	67437000	38198000	29239000	35771	1585	33855	220377;220378;220379;220380;220381;220382;220383;220384	297365;297366;297367;297368;297369;297370;297371;297372;297373	297367			8	
MATLTSGGEKPNK	2	Unmodified	1332.6708	0.6707503	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	14.573	14.636	3	0.00027236	11424	160511_QHF_FH_JSI12i_3	78.486	61.953			1.1818	1.1976	109.22	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1818	1.1976	109.22	2	2	Median	140890000	69073000	71812000	0	0	0	0	0	0	0	0	0	140890000	69073000	71812000	35772	2943	33856	220385;220386;220387	297374;297375;297376	297375			3	
MATNAAAQNAIK	1	Oxidation (M)	1218.6027	0.60267073	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		1	0	2										1	1		20.823	20.624	2	0.00019858	17810	160511_QHF_FH_JSI10i_1	84.817	65.114			0.87144	0.93223	3.8584	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77461	0.90714	NaN	1	0	Median	0.98037	0.95802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97274000	50118000	47156000	0	0	0	42049000	23450000	18599000	55225000	26668000	28558000	0	0	0	35773	5616	33857	220388;220389	297377;297378	297378		2713	2	
MATNAAAQNAIK	1	Unmodified	1202.6078	0.60775611	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.2	5	7				1	1			3	3	4	4	22.111	20.671	2	6.8057E-06	17770	160511_QHF_FH_JSI10i_2	123.63	107.29			1.132	1.1386	33.198	10	7	Median	1.4627	1.2325	41.14	3	2	Median	0.85829	0.99458	31.709	3	3	Median	1.4595	1.441	46.981	3	2	Median	0.98065	1.0518	NaN	1	0	Median	1153700000	558410000	595320000	384490000	166180000	218310000	220170000	135840000	84326000	259450000	92959000	166490000	289620000	163430000	126190000	35774	5616	33857	220390;220391;220392;220393;220394;220395;220396;220397;220398;220399;220400;220401;220402;220403	297379;297380;297381;297382;297383;297384;297385;297386;297387;297388;297389;297390;297391;297392	297392			14	
MATNAAAQNAIKK	2	Unmodified	1330.7027	0.70271913	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	16.708	16.458	2;3	5.3061E-06	13665	160511_QHF_FH_JSI11i_3	121.9	110.68			0.7994	0.83433	98.236	6	6	Median	NaN	NaN	NaN	0	0	Median	1.1478	1.3265	131.14	2	2	Median	0.78427	0.73327	83.822	2	2	Median	0.83957	0.84437	142.1	2	2	Median	539590000	288330000	251260000	0	0	0	74097000	34177000	39920000	192310000	103760000	88546000	273180000	150390000	122790000	35775	5616	33858	220404;220405;220406;220407;220408;220409;220410;220411	297393;297394;297395;297396;297397;297398;297399;297400	297395			8	
MATNAAAQNAIKK	2	Acetyl (K)	1372.7133	0.71328381	5616	Q9Y490	TLN1	Talin-1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		36.612	27.252	2	0.0091463	16686	160513_QHF_FH_JSI11Kac_4	66.595	56.364			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	883220	883220	0	0	0	0	0	0	0	883220	883220	0	0	0	0	35776	5616	33858	220412	297401	297401	3501		1	
MATVVLGGDTMGPER	0	Unmodified	1532.7327	0.73269863	2744	Q16626	MEA1	Male-enhanced antigen 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.962	56.455	2	0.0094449	48915	160511_QHF_FH_JSI11i_2	46.592	36.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35777	2744	33859	220413	297402	297402			1	
MATVWDEAEQDGIGEEVLK	1	Unmodified	2118.978	0.97795051	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										1	3	2	88.577	88.171	2;3	1.4547E-54	80285	160511_QHF_FH_JSI12i_1	224.05	210.92			1.3182	1.3213	9.1427	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3677	1.3213	6.1164	3	2	Plateau	1.386	1.4372	2.8203	2	1	Median	121400000	47807000	73598000	0	0	0	0	0	0	71284000	31784000	39500000	50121000	16024000	34097000	35778	1131	33860	220414;220415;220416;220417;220418;220419	297403;297404;297405;297406;297407;297408;297409;297410	297407			8	
MATYLTGELTATSEDYK	1	Unmodified	1892.8714	0.87136018	3135	Q6QNY1	BLOC1S2	Biogenesis of lysosome-related organelles complex 1 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		69.739	69.066	2	5.0494E-08	61366	160511_QHF_FH_JSI9i_1	131.37	116.49			1.2326	1.0077	NaN	1	1	Median	1.2326	1.0077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33335000	4667200	28668000	18148000	4667200	13480000	0	0	0	15188000	0	15188000	0	0	0	35779	3135	33861	220420;220421;220422	297411;297412;297413	297413			3	
MAVLALLAK	1	Unmodified	928.57796	0.57795953	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.01		8	9					2	5	7	7	5	5	84.628	81.646	1;2	6.0943E-11	41373	160513_QHF_FH_JSI11Kac_6	151.51	108.26			0.77213	0.84342	75.778	24	17	Median	1.0488	0.89225	70.517	7	5	Median	0.72358	0.85075	75.292	7	4	Median	0.75884	0.70995	93.217	5	4	Median	0.78035	0.82428	90.118	5	4	Median	12016000000	5917100000	6098500000	2895500000	1293100000	1602500000	2988800000	1485600000	1503200000	3334800000	1713800000	1621000000	2796500000	1424600000	1371900000	35780	2094	33862	220423;220424;220425;220426;220427;220428;220429;220430;220431;220432;220433;220434;220435;220436;220437;220438;220439;220440;220441;220442;220443;220444;220445;220446	297414;297415;297416;297417;297418;297419;297420;297421;297422;297423;297424;297425;297426;297427;297428;297429;297430;297431;297432;297433;297434;297435;297436;297437;297438;297439;297440;297441;297442;297443;297444;297445;297446;297447;297448;297449;297450;297451;297452;297453;297454;297455;297456;297457;297458;297459;297460	297430			47	
MAVLALLAK	1	Oxidation (M)	944.57287	0.57287415	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.791							5	6	5	3	6	3	4	75.09	65.179	2	0.0011473	32678	160513_QHF_FH_JSI10Kac_5	85.265	56.116			1.0278	1.0292	22.806	16	2	Median	1.0624	0.89782	14.51	3	0	Median	0.92287	1.0974	32.539	6	2	Median	1.0766	1.0421	14.178	3	0	Plateau	0.92131	1.0119	13.022	4	0	Median	414650000	173720000	240930000	91758000	39283000	52475000	169990000	65226000	104760000	113170000	49680000	63490000	39734000	19528000	20206000	35781	2094	33862	220447;220448;220449;220450;220451;220452;220453;220454;220455;220456;220457;220458;220459;220460;220461;220462	297461;297462;297463;297464;297465;297466;297467;297468;297469;297470;297471;297472;297473;297474;297475;297476;297477	297473		1770	17	
MAVLNEQVK	1	Unmodified	1030.5481	0.54811597	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.76	2	3	1				3			2	2	3	2	39.862	35.902	2	0.00026203	21384	160513_QHF_FH_JSI11Kac_4	101.72	59.325			0.93321	0.97298	32.356	9	6	Median	1.1956	1.0037	65.028	2	2	Median	0.76176	0.89362	8.5273	2	1	Median	1.4332	1.43	35.232	3	2	Plateau	0.91305	1.0076	4.939	2	1	Median	1995100000	1116400000	878640000	275010000	105300000	169710000	516760000	348840000	167920000	939870000	523000000	416870000	263430000	139290000	124140000	35782	1649	33864	220463;220464;220465;220466;220467;220468;220469;220470;220471	297478;297479;297480;297481;297482;297483;297484;297485;297486;297487	297483			10	
MAVLYPQVIVDHPFFFLIR	0	Unmodified	2304.2493	0.24930218	4287	Q99574	SERPINI1	Neuroserpin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.736	89.316	3	1.3742E-34	50575	160513_QHF_FH_JSI11Kac_6	170.61	155.19			1.2248	1.16	12.39	4	0	Median	1.4145	1.2122	NaN	1	0	Median	0.87732	1.0325	NaN	1	0	Median	1.1555	1.11	NaN	1	0	Median	1.2982	1.3768	NaN	1	0	Median	2289800000	1138000000	1151700000	535390000	247140000	288250000	869900000	473320000	396580000	504590000	242780000	261810000	379890000	174790000	205110000	35783	4287	33865	220472;220473;220474;220475	297488;297489;297490;297491;297492	297488			5	
MAVMAMVIK	1	Unmodified	992.5221	0.52210091	3270	Q7Z4H3	HDDC2	HD domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		75.753	67.905	2	0.00011827	37359	160513_QHF_FH_JSI10Kac_6	99.139	71.614			1.1715	1.2679	125.47	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43581	0.52212	NaN	1	1	Median	3.1491	3.0787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118430000	83751000	34678000	0	0	0	92034000	75851000	16183000	26395000	7899500	18495000	0	0	0	35784	3270	33866	220476;220477	297493;297494	297494			2	
MAVPTCLLQMK	1	Unmodified	1290.6498	0.64982062	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		79.274	78.598	2	0.0027437	69022	160511_QHF_FH_JSI11i_2	71.223	63.743			2.4607	2.7349	65.023	2	2	Median	NaN	NaN	NaN	0	0	Median	3.4953	4.3314	NaN	1	1	Median	1.7324	1.7269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59439000	21572000	37866000	0	0	0	28242000	6162000	22080000	31197000	15410000	15787000	0	0	0	35785	5170	33867	220478;220479	297495;297496	297495			2	
MAVQDAVDALMQK	1	Unmodified	1418.6898	0.68977118	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.65	0.588	7	9	1							5	4	3	5	86.967	86.373	2;3	1.7511E-10	75907	160511_QHF_FH_JSI11i_2	176.42	145.86			1.0023	1.0273	31.459	17	9	Median	1.148	0.98959	53.963	5	4	Median	0.89896	0.76825	19.637	4	1	Linear	1.1659	1.1098	7.0577	3	1	Median	0.94984	0.93571	26.276	5	3	Median	1283200000	640170000	642990000	201950000	100860000	101090000	324010000	184250000	139760000	308020000	141390000	166630000	449180000	213670000	235510000	35786	1578	33868	220480;220481;220482;220483;220484;220485;220486;220487;220488;220489;220490;220491;220492;220493;220494;220495;220496	297497;297498;297499;297500;297501;297502;297503;297504;297505;297506;297507;297508;297509;297510;297511;297512;297513;297514;297515;297516;297517;297518;297519;297520;297521;297522;297523	297518			27	
MAVTFIGNSTAIQELFK	1	Oxidation (M)	1884.9655	0.96553533	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.59		8	9						11	9	6	6	7	97.154	93.635	2;3	6.3973E-129	45993	160513_QHF_FH_JSI9Kac_6	270.45	252.78			0.89539	0.88637	15.53	27	3	Median	1.0346	0.86825	16.417	8	1	Median	0.78445	0.90078	16.862	6	1	Median	0.90319	0.88191	9.6113	6	0	Median	0.8518	0.94996	18.77	7	1	Median	6993500000	3774400000	3219200000	1922500000	936980000	985560000	1013900000	591220000	422720000	1669500000	919220000	750240000	2387600000	1327000000	1060600000	35787	872	33869	220497;220498;220499;220500;220501;220502;220503;220504;220505;220506;220507;220508;220509;220510;220511;220512;220513;220514;220515;220516;220517;220518;220519;220520;220521;220522;220523;220524	297524;297525;297526;297527;297528;297529;297530;297531;297532;297533;297534;297535;297536;297537;297538;297539;297540;297541;297542;297543;297544;297545;297546;297547;297548;297549;297550;297551;297552;297553;297554;297555;297556;297557;297558;297559;297560;297561;297562;297563;297564;297565;297566;297567	297553		416	43	
MAVTFIGNSTAIQELFK	1	Unmodified	1868.9706	0.97062071	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	6	8	8						8	6	8	8	8	99.722	97.423	2;3	3.5198E-138	82396	160511_QHF_FH_JSI9i_3	340.57	280.05			0.85892	0.8563	18.846	30	2	Median	1.0171	0.86805	10.06	6	0	Median	0.76459	0.89771	24.359	8	0	Median	0.84429	0.84651	18.216	8	0	Median	0.84102	0.88312	21.457	8	2	Median	68213000000	34952000000	33262000000	12545000000	6141800000	6403500000	15944000000	8551100000	7392800000	20311000000	10190000000	10121000000	19413000000	10069000000	9344500000	35788	872	33869	220525;220526;220527;220528;220529;220530;220531;220532;220533;220534;220535;220536;220537;220538;220539;220540;220541;220542;220543;220544;220545;220546;220547;220548;220549;220550;220551;220552;220553;220554	297568;297569;297570;297571;297572;297573;297574;297575;297576;297577;297578;297579;297580;297581;297582;297583;297584;297585;297586;297587;297588;297589;297590;297591;297592;297593;297594;297595;297596;297597;297598;297599;297600;297601;297602;297603;297604;297605;297606;297607;297608;297609;297610;297611;297612;297613;297614;297615;297616;297617;297618;297619;297620	297591			53	
MAVTFIGNSTAIQELFKR	1	Unmodified	2025.0717	0.07173174	872	P07437	TUBB	Tubulin beta chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		89.453	81.54	3	3.7884E-17	44989	160513_QHF_FH_JSI9Kac_6	135.27	117.99			0.54361	0.73801	36.328	3	1	Plateau	1.1859	0.99576	NaN	1	0	Median	0.46033	0.54698	NaN	1	0	Median	0.54361	0.51696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	361160000	205810000	155360000	171150000	66257000	104890000	162150000	115960000	46195000	27862000	23594000	4267300	0	0	0	35789	872	33870	220555;220556;220557	297621;297622;297623;297624	297623			4	
MAVTLDKDAYYRRVKR	2	Acetyl (K)	2026.0782	0.078214102	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	4		By MS/MS			16	0									1		1			88.776	83.056	2	0.047649	47020	160513_QHF_FH_JSI10Kac_6	41.283	20.33			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35790	5658	33871	220558	297625	297625			1	
MAYLAGLHANIAVANIVNSVK	1	Unmodified	2168.1776	0.1775938	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			99.436	99.234	3	0.057063	82077	160511_QHF_FH_JSI10i_3	18.316	9.7158			0.37758	0.44315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37758	0.44315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9312400	8121200	1191200	0	0	0	9312400	8121200	1191200	0	0	0	0	0	0	35791	4380	33872	220559	297626	297626			1	
MCDLVSDFDGFSER	0	Unmodified	1676.6811	0.68105699	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.081	80.195	2	0.00010699	70615	160511_QHF_FH_JSI11i_2	107.4	102.93			1.2371	1.305	13.719	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1761	1.1843	NaN	1	0	Median	1.3013	1.4379	NaN	1	0	Median	39501000	21189000	18312000	0	0	0	0	0	0	24571000	11865000	12707000	14929000	9324400	5605100	35792	1356	33873	220560;220561	297627;297628;297629;297630	297630			4	
MCHPSIEGFTPR	0	Unmodified	1430.6435	0.64348969	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.54	3.63		6	6						1	1	4	5	3	45.523	44.086	2;3	4.6754E-06	37571	160511_QHF_FH_JSI12i_3	111.63	105.6			0.91142	1.0027	26.618	13	3	Median	1.3737	1.1458	NaN	1	0	Median	1.0057	1.1964	39.697	4	1	Median	0.87702	0.86715	8.2326	5	2	Median	1.3125	1.3383	14.473	3	0	Plateau	2288600000	1074900000	1213700000	63030000	22920000	40110000	532310000	259310000	273000000	903630000	466630000	437000000	789610000	325980000	463620000	35793	1372	33874	220562;220563;220564;220565;220566;220567;220568;220569;220570;220571;220572;220573;220574	297631;297632;297633;297634;297635;297636;297637;297638;297639;297640;297641;297642;297643;297644;297645;297646;297647	297645			17	
MCLAHSAGVVPTSQSLADMQDHAPAIGR	0	Unmodified	2919.379	0.37896551	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			70.026	68.554	4	3.3961E-21	57336	160511_QHF_FH_JSI10i_3	115.11	108			0.91667	1.0556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91667	1.0556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33485000	17424000	16061000	0	0	0	33485000	17424000	16061000	0	0	0	0	0	0	35794	2997	33875	220575	297648;297649	297648			2	
MCLFAGFQR	0	Unmodified	1128.5209	0.52085536	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	3	2	72.688	69.131	2	2.8239E-11	58602	160511_QHF_FH_JSI10i_3	159.19	145.04			0.94121	0.96632	14.594	9	0	Median	1.1032	0.90159	9.8057	2	0	Median	0.873	1.0526	6.8803	2	0	Median	0.87284	0.81257	7.3272	3	0	Plateau	1.1199	1.1701	12.96	2	0	Median	1331100000	677540000	653570000	303090000	130670000	172430000	294210000	165840000	128360000	445040000	234460000	210590000	288770000	146580000	142200000	35795	2161	33876	220576;220577;220578;220579;220580;220581;220582;220583;220584;220585	297650;297651;297652;297653;297654;297655;297656;297657;297658;297659;297660;297661;297662;297663;297664	297651			13	
MCLFAGFQR	0	Oxidation (M)	1144.5158	0.51576998	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									3		1		2	64.899	55.564	2	0.026673	28990	160513_QHF_FH_JSI12Kac_6	60.972	52.553			1.6292	1.8564	37.647	3	1	Median	NaN	NaN	NaN	0	0	Median	1.6292	1.8564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4646	1.5949	51.777	2	1	Median	35866000	15481000	20386000	0	0	0	12856000	4994100	7861900	0	0	0	23010000	10487000	12524000	35796	2161	33876	220586;220587;220588	297665;297666	297666			2	
MCLYFGSAFATPFLVVR	0	Unmodified	1977.9845	0.98449664	1087	P15954	COX7C	Cytochrome c oxidase subunit 7C, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.44	89.022	3	9.9776E-17	53174	160513_QHF_FH_JSI10Kac_6	133.48	127.7			0.99059	1.0294	30.213	4	1	Median	0.93888	0.79315	NaN	1	1	Median	1.0171	1.1691	NaN	1	0	Median	0.96481	0.90646	NaN	1	0	Median	1.5176	1.5738	NaN	1	0	Median	485540000	218810000	266730000	32211000	6940300	25271000	186980000	95865000	91117000	146270000	70857000	75408000	120090000	45147000	74940000	35797	1087	33877	220589;220590;220591;220592	297667;297668;297669;297670;297671;297672	297671			6	
MCMYKYPGMK	2	Acetyl (K)	1349.564	0.56404208	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.961	53.262	2	0.041444	28854	160513_QHF_FH_JSI11Kac_6	51.346	46.363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2094300	2094300	0	0	0	0	0	0	0	2094300	2094300	0	0	0	0	35798	1945	33878	220593	297673	297673			1	
MCPATQK	1	Unmodified	834.37279	0.37279414	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.7349	6.6237	2	0.0066081	4386	160511_QHF_FH_JSI11i_1	78.616	58.769			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35799	4686	33879	220594	297674	297674			1	
MCSLAVVNLGTHK	1	Unmodified	1428.7217	0.72174001	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.25	5.63			3						1			3	1	54.961	51.646	2;3	5.3996E-05	44079	160511_QHF_FH_JSI12i_3	62.365	58.123			1.6595	1.3511	17.473	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6926	1.5822	2.004	2	2	Median	1.1307	1.1702	NaN	1	0	Median	126160000	61674000	64483000	0	0	0	0	0	0	56059000	25912000	30147000	70098000	35762000	34336000	35800	1892	33880	220595;220596;220597;220598	297675;297676;297677;297678	297678			4	
MCSLMLSK	1	Unmodified	968.44933	0.4493299	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	42.446	41.07	2	0.010794	35129	160511_QHF_FH_JSI12i_2	54.776	34.294			0.2604	0.29794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2604	0.29794	NaN	1	0	Median	47057000	38955000	8101700	0	0	0	0	0	0	0	0	0	47057000	38955000	8101700	35801	2084	33881	220599;220600	297679;297680	297679			2	
MCSLMLSKELPAR	1	Acetyl (K)	1576.7775	0.77754033	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.632	68.314	2	0.044982	37375	160513_QHF_FH_JSI11Kac_6	50.116	27.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10218000	10218000	0	0	0	0	0	0	0	10218000	10218000	0	0	0	0	35802	2084	33882	220601	297681	297681			1	
MCTLIDKFDEHDGPVR	1	Unmodified	1931.887	0.88696744	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		56.503	56.503	4	0.0018627	50105	160511_QHF_FH_JSI11i_3	57.525	53.648			0.6234	0.56999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6234	0.56999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40779000	22851000	17927000	0	0	0	0	0	0	40779000	22851000	17927000	0	0	0	35803	1805	33883	220602	297682	297682			1	
MDAAEVEFLAEK	1	Acetyl (Protein N-term)	1393.6435	0.64353249	5492	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.883	94.452	2	7.3502E-06	85712	160511_QHF_FH_JSI10i_1	88.596	80.376			0.98426	1.0554	14.789	3	0	Plateau	1.5383	1.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99277	0.94963	NaN	1	0	Median	0.98426	1.0554	NaN	1	0	Median	100940000	53139000	47802000	23940000	10126000	13814000	0	0	0	32968000	17676000	15292000	44033000	25338000	18695000	35804	5492	33884	220603;220604;220605;220606	297683;297684;297685;297686;297687	297686			5	
MDAATLTYDTLR	0	Acetyl (Protein N-term)	1411.6653	0.66533057	5634	Q9Y4P1	ATG4B	Cysteine protease ATG4B	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	87.105	86.625	2	2.8437E-06	78672	160511_QHF_FH_JSI10i_1	118.4	98.074			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35805	5634	33885	220607;220608;220609	297688;297689;297690	297689			3	
MDADDSRAPK	1	Acetyl (Protein N-term)	1146.4975	0.49753696	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	16.02	15.551	2	8.6502E-08	13193	160511_QHF_FH_JSI12i_1	78.516	70.296			1.3025	1.3064	115.04	4	1	Median	1.7337	1.4248	NaN	1	0	Median	0.11626	0.1351	NaN	1	1	Median	1.4156	1.3727	NaN	1	0	Median	1.1984	1.2432	NaN	1	0	Median	1679400000	831210000	848210000	461230000	167320000	293910000	308090000	282220000	25873000	372340000	140660000	231680000	537760000	241020000	296740000	35806	2176	33886	220610;220611;220612;220613;220614	297691;297692;297693;297694;297695;297696;297697	297694			7	
MDADDSRAPK	1	Acetyl (Protein N-term);Oxidation (M)	1162.4925	0.49245158	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	11.248	10.886	2	3.59E-05	12884	160511_QHF_FH_JSI9i_1	77.732	69.512			1.18	1.1455	73.835	7	1	Median	1.4511	1.1805	4.2536	2	0	Median	0.53173	0.62991	166.73	2	1	Median	1.18	1.1549	NaN	1	0	Median	0.83106	0.87421	15.355	2	0	Median	671730000	306790000	364940000	171700000	72616000	99088000	146150000	67534000	78620000	155300000	69666000	85638000	198570000	96973000	101600000	35807	2176	33886	220615;220616;220617;220618;220619;220620;220621;220622;220623;220624	297698;297699;297700;297701;297702;297703;297704;297705;297706;297707	297707		1825	10	
MDADGFLPITLIASFHR	0	Oxidation (M)	1918.9611	0.96111866	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	94.998	86.396	2;3	8.3515E-06	46659	160513_QHF_FH_JSI12Kac_6	98.408	89.376			1.1444	1.1219	9.8258	5	1	Median	1.5085	1.2928	NaN	1	0	Median	0.95355	1.1219	NaN	1	0	Median	1.1444	1.096	NaN	1	0	Median	1.0788	1.1503	14.966	2	1	Median	601490000	283220000	318270000	119190000	49355000	69840000	170630000	88428000	82201000	125350000	53860000	71487000	186320000	91576000	94746000	35808	3132	33887	220625;220626;220627;220628;220629	297708;297709;297710;297711;297712	297710		2203	5	
MDADGFLPITLIASFHR	0	Unmodified	1902.9662	0.96620404	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			2						10	2	2	4	4	97.741	90.564	2;3	1.313E-83	49648	160513_QHF_FH_JSI11Kac_6	188.19	177.15			1.0851	1.0795	17.384	12	3	Median	1.3476	1.1422	10.756	2	0	Median	0.99394	1.174	9.0862	2	0	Median	1.2189	1.1328	27.073	4	1	Median	0.95612	0.97527	12.507	4	2	Median	6836200000	3298300000	3538000000	1480000000	663400000	816650000	1761900000	890750000	871130000	1947700000	951190000	996500000	1646600000	792930000	853680000	35809	3132	33887	220630;220631;220632;220633;220634;220635;220636;220637;220638;220639;220640;220641	297713;297714;297715;297716;297717;297718;297719;297720;297721;297722;297723	297713			11	
MDAEQDPNVQVDHLNLLK	1	Unmodified	2078.0103	0.010253695	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	3	1	1	66.962	66.338	2;3	1.6763E-09	60072	160511_QHF_FH_JSI10i_1	138.66	129.5			0.98664	0.95856	12.503	5	1	Median	1.2271	1.0306	NaN	1	0	Median	0.71611	0.85073	10.912	2	0	Median	0.98664	0.95856	NaN	1	1	Median	1.0677	1.0926	NaN	1	0	Median	701990000	342500000	359480000	67571000	31707000	35864000	241450000	107110000	134340000	218710000	106180000	112540000	174250000	97505000	76745000	35810	2195	33888	220642;220643;220644;220645;220646;220647;220648	297724;297725;297726;297727;297728;297729;297730;297731;297732;297733	297729			9	
MDAEVPDVNIEGPDAK	1	Unmodified	1698.7771	0.77706586	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	63.23	62.595	2;3	1.2925E-10	55590	160511_QHF_FH_JSI9i_1	151.78	134.84			0.99142	0.88936	14.171	9	3	Median	0.99669	0.82349	1.4221	2	0	Median	0.79623	0.93784	7.5057	2	0	Median	0.89483	0.85723	3.2272	2	1	Median	1.0434	1.0715	8.573	3	2	Median	1241000000	639080000	601940000	167770000	83685000	84090000	282230000	163180000	119040000	261220000	134220000	126990000	529800000	257990000	271810000	35811	2286	33889	220649;220650;220651;220652;220653;220654;220655;220656;220657	297734;297735;297736;297737;297738;297739;297740;297741	297741			7	
MDAFMHEK	1	Unmodified	1007.4205	0.42047261	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		22.567	22.232	2;3	0.0047742	18465	160511_QHF_FH_JSI11i_2	46.001	41.462			1.06	1.0833	32.81	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.06	1.0833	32.81	2	1	Median	NaN	NaN	NaN	0	0	Median	85668000	52850000	32819000	0	0	0	0	0	0	85668000	52850000	32819000	0	0	0	35812	1654	33890	220658;220659	297742;297743	297742			2	
MDAGVTESGLNVTLTIR	0	Acetyl (Protein N-term)	1817.9193	0.91931342	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	1	0	0		By MS/MS			1	0	2										2			98.041	98.048	2	5.6992E-05	89056	160511_QHF_FH_JSI10i_1	107.37	63.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35813	2656	33891	220660;220661	297744;297745	297745			2	
MDAILTEAIK	1	Unmodified	1103.5896	0.58964643	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.11	5.3	5	2					2				4	3	2	63.679	63.213	2	1.3766E-05	57717	160511_QHF_FH_JSI12i_1	101.65	77.491			0.91212	0.93521	43.065	6	5	Median	NaN	NaN	NaN	0	0	Median	0.93223	1.0814	62.413	2	2	Median	0.8173	0.83746	47.671	3	3	Median	1.0179	1.0444	NaN	1	0	Median	472530000	247400000	225130000	0	0	0	173140000	83356000	89782000	229090000	126460000	102630000	70307000	37591000	32716000	35814	2927	33892	220662;220663;220664;220665;220666;220667;220668;220669;220670	297746;297747;297748;297749;297750;297751;297752;297753;297754;297755	297750			10	
MDALQLANSAFAVDLFK	1	Acetyl (Protein N-term)	1894.9499	0.94988527	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.75	7	6	3							3	5	3	5	103.76	103.69	2;3	3.9288E-98	92209	160511_QHF_FH_JSI10i_2	205.72	186.97			1.0838	1.0787	60.068	12	1	Median	1.1898	0.96053	131.08	3	1	Median	0.88175	1.0689	1.4909	3	0	Median	1.0829	1.0788	2.4321	3	0	Median	1.0847	1.1511	4.2864	3	0	Plateau	2447100000	1180500000	1266500000	205680000	93394000	112290000	826180000	435490000	390690000	531400000	266550000	264850000	883790000	385090000	498700000	35815	1464	33893	220671;220672;220673;220674;220675;220676;220677;220678;220679;220680;220681;220682;220683;220684;220685;220686	297756;297757;297758;297759;297760;297761;297762;297763;297764;297765;297766;297767;297768;297769;297770;297771;297772;297773;297774;297775;297776	297772			21	
MDALQLANSAFAVDLFK	1	Acetyl (Protein N-term);Oxidation (M)	1910.9448	0.94479989	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	1	1	0			By MS/MS	By MS/MS	1	0	4											2	2	102.95	102.86	2;3	2.405E-98	93469	160511_QHF_FH_JSI12i_1	167.44	153.18			0.9389	0.97326	49.506	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71207	0.68066	76.193	2	1	Median	0.9389	0.97326	16.381	2	0	Median	183930000	76983000	106950000	0	0	0	0	0	0	63794000	22860000	40934000	120140000	54123000	66013000	35816	1464	33893	220687;220688;220689;220690	297777;297778	297778		1133	2	
MDANSATSEEMNEIIHAR	0	Unmodified	2017.8833	0.88333862	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		62.638	62.007	3	4.013E-09	54068	160511_QHF_FH_JSI11i_2	97.502	94.274			0.46339	0.57566	53.744	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.46339	0.57566	NaN	1	1	Median	1.3155	1.3792	26.22	2	2	Median	NaN	NaN	NaN	0	0	Median	135200000	85096000	50109000	0	0	0	60504000	45526000	14978000	74700000	39569000	35131000	0	0	0	35817	5232	33894	220691;220692;220693	297779;297780;297781	297780			3	
MDANVLMHLR	0	Unmodified	1198.5951	0.59508293	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.951	59.032	3	0.00067431	51964	160511_QHF_FH_JSI9i_2	57.348	48.16			0.92238	1.0739	20.319	4	0	Median	0.8266	0.72587	NaN	1	0	Median	0.85408	1.051	NaN	1	0	Median	1.1188	1.1125	NaN	1	0	Median	0.99615	1.0973	NaN	1	0	Median	108560000	50145000	58418000	17131000	9860200	7270800	33749000	17920000	15829000	30240000	10171000	20068000	27443000	12193000	15250000	35818	3249	33895	220694;220695;220696;220697	297782;297783;297784;297785;297786;297787;297788	297784			7	
MDASLEK	1	Acetyl (Protein N-term)	834.37932	0.3793193	3111	Q6P996;Q6P474	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	yes	no	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		36.362	35.619	1	0.0025996	32157	160511_QHF_FH_JSI11i_1	75.109	62.678			0.19527	0.18734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19527	0.18734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50189000	29615000	20575000	18998000	0	18998000	0	0	0	31192000	29615000	1576900	0	0	0	35819	3111	33896	220698;220699	297789;297790	297789			2	
MDASTGDAIK	1	Unmodified	1007.4594	0.45936054	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.553	19.049	2	0.000642	16317	160511_QHF_FH_JSI10i_1	85.716	59.607			0.81777	1.0403	25.999	4	4	Linear	1.0189	0.82561	NaN	1	1	Median	0.86975	1.025	NaN	1	1	Median	0.76891	0.74494	NaN	1	1	Median	0.51019	0.54849	NaN	1	1	Median	1605600000	1016300000	589260000	396800000	232270000	164530000	532650000	333070000	199580000	284000000	168650000	115350000	392120000	282320000	109800000	35820	3965	33897	220700;220701;220702;220703	297791;297792;297793;297794	297793			4	
MDATANDVPSDR	0	Unmodified	1290.551	0.55102909	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	2	3	24.258	20.628	2	3.5707E-22	18205	160511_QHF_FH_JSI12i_1	158.05	135.9			1.1807	1.1136	100.13	7	0	Median	1.1807	0.9757	NaN	1	0	Median	0.8095	0.95615	2.0299	2	0	Median	1.2335	1.1907	9.4711	2	0	Median	4.5508	4.9334	158.87	2	0	Median	1769200000	772400000	996770000	484960000	232340000	252630000	496730000	281000000	215730000	498730000	242510000	256220000	288750000	16552000	272200000	35821	1034	33898	220704;220705;220706;220707;220708;220709;220710;220711	297795;297796;297797;297798;297799;297800;297801;297802;297803;297804;297805;297806	297798			12	
MDATANDVPSDR	0	Oxidation (M)	1306.5459	0.54594371	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									3	1	1		21.688	20.898	2	7.1993E-05	17966	160511_QHF_FH_JSI10i_1	99.506	90.149			1.0343	1.176	64.77	5	1	Median	1.0343	0.85943	88.246	3	1	Median	1.0108	1.176	NaN	1	0	Median	1.3188	1.2684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	278270000	135630000	142640000	157170000	78780000	78395000	69202000	35837000	33365000	51890000	21009000	30882000	0	0	0	35822	1034	33898	220712;220713;220714;220715;220716	297807;297808;297809;297810	297808		645	4	
MDATANDVPSDRYK	1	Unmodified	1581.7093	0.70932065	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	6						2			1	2	2	3	28.268	25.604	2;3	7.4484E-05	22563	160511_QHF_FH_JSI10i_1	86.214	79.486			1.0226	1.0255	35.323	8	2	Median	1.3546	1.1146	NaN	1	1	Median	0.53616	0.63865	29.703	2	0	Median	1.4075	1.3755	33.459	2	0	Median	0.85792	0.89802	16.605	3	1	Plateau	879150000	466860000	412290000	22161000	7067700	15093000	343660000	211630000	132030000	215550000	102970000	112580000	297780000	145190000	152590000	35823	1034	33899	220717;220718;220719;220720;220721;220722;220723;220724	297811;297812;297813;297814;297815;297816;297817;297818	297814			8	
MDATANDVPSPYEVR	0	Unmodified	1663.7512	0.75118546	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	5.93	10	2				4	3			3	8	4	4	54.469	50.519	2;3	1.5681E-65	45865	160511_QHF_FH_JSI11i_1	248.32	239.74			1.0599	1.1053	10.184	17	4	Median	1.2496	1.0458	7.2397	3	2	Median	0.90857	1.0842	7.7126	6	2	Median	1.1895	1.1672	6.3689	4	0	Median	1.0501	1.1104	16.23	4	0	Median	14108000000	6849100000	7258400000	4820500000	2288900000	2531600000	4700800000	2506500000	2194300000	2317100000	1069900000	1247200000	2269100000	983800000	1285300000	35824	1344	33900	220725;220726;220727;220728;220729;220730;220731;220732;220733;220734;220735;220736;220737;220738;220739;220740;220741;220742;220743	297819;297820;297821;297822;297823;297824;297825;297826;297827;297828;297829;297830;297831;297832;297833;297834;297835;297836;297837;297838;297839;297840;297841;297842;297843;297844;297845;297846;297847;297848	297822			28	
MDATANDVPSPYEVR	0	Oxidation (M)	1679.7461	0.74610008	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	1	0		By MS/MS		By MS/MS	13	0						3					1		2	52.166	42.972	2	8.3064E-07	22575	160513_QHF_FH_JSI10Kac_3	110.38	101.65			0.95975	1.0484	8.0368	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78357	0.92385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96616	1.0604	1.6033	2	1	Median	14693000	7116200	7576500	0	0	0	3661000	2173900	1487200	0	0	0	11032000	4942400	6089300	35825	1344	33900	220744;220745;220746	297849;297850;297851;297852	297852		985	4	
MDATANDVPSPYEVRGFPTIYFSPANK	1	Unmodified	2986.4171	0.41710838	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	94.54	94.364	3	3.0057E-09	81869	160511_QHF_FH_JSI12i_3	69.619	66.818			1.0479	1.0007	22.537	2	2	Median	1.3617	1.1736	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80647	0.85332	NaN	1	1	Median	39975000	27754000	12221000	11103000	4616800	6486400	7549200	7549200	0	0	0	0	21322000	15588000	5734700	35826	1344	33901	220747;220748;220749	297853;297854;297855;297856	297856			4	
MDATSYSSIASEFGVR	0	Unmodified	1719.7774	0.77740021	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								1		2	2	83.329	82.561	2	5.593E-12	75430	160511_QHF_FH_JSI11i_1	114.82	98.927			1.107	1.0673	11.609	3	1	Plateau	1.519	1.3424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.107	1.0673	NaN	1	0	Median	1.0729	1.1601	NaN	1	0	Median	42793000	18630000	24162000	15564000	5080000	10483000	0	0	0	14625000	8063600	6561200	12604000	5486600	7117700	35827	4142	33902	220750;220751;220752;220753;220754	297857;297858;297859;297860;297861;297862;297863	297857			7	
MDCQECPEGYR	0	Unmodified	1443.5217	0.52171957	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	19.936	19.644	2	8.8174E-05	17015	160511_QHF_FH_JSI12i_1	89.171	87.92			0.81721	0.79063	27.922	3	1	Median	NaN	NaN	NaN	0	0	Median	0.51205	0.60193	NaN	1	1	Median	0.81721	0.79063	NaN	1	0	Median	1.0321	1.0521	NaN	1	0	Median	91292000	51338000	39953000	0	0	0	16503000	10451000	6051400	45946000	26693000	19253000	28843000	14194000	14649000	35828	1192	33903	220755;220756;220757	297864;297865;297866;297867;297868	297866			5	
MDCQETPEGYK	1	Unmodified	1356.5326	0.53260184	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	21.054	20.405	2	7.051E-10	17538	160511_QHF_FH_JSI11i_1	137.98	125.93			1.1764	1.0958	50.179	5	2	Median	0.81356	0.66431	70.782	2	2	Median	1.1764	1.3667	NaN	1	0	Median	0.83037	0.81089	NaN	1	0	Median	1.2617	1.3041	NaN	1	0	Median	202080000	106060000	96020000	42966000	22533000	20433000	48841000	24079000	24762000	57770000	33992000	23778000	52504000	25457000	27048000	35829	512	33904	220758;220759;220760;220761;220762	297869;297870;297871;297872;297873;297874;297875;297876;297877	297870			9	
MDDEEETYR	0	Acetyl (Protein N-term)	1228.4554	0.45539737	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	31.656	31.084	2	0.00079315	27965	160511_QHF_FH_JSI12i_1	72.879	72.879			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35830	1157	33905	220763	297878;297879	297878			2	
MDDKGDPSNEEAPK	2	Acetyl (Protein N-term)	1573.6566	0.65661638	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	22.008	21.341	2	2.2092E-05	18573	160511_QHF_FH_JSI12i_1	77.64	62.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24825000	0	24825000	8671000	0	8671000	0	0	0	16154000	0	16154000	0	0	0	35831	4413	33906	220764;220765;220766	297880;297881;297882;297883	297881			4	
MDDPTVNWSNER	0	Unmodified	1462.6147	0.61469198	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.61	43.941	2	9.3058E-06	39592	160511_QHF_FH_JSI10i_1	119.27	98.945			0.92243	0.95248	4.3313	4	0	Median	1.2595	1.0294	NaN	1	0	Median	0.81009	0.95961	NaN	1	0	Median	0.94808	0.93484	NaN	1	0	Median	0.89748	0.9454	NaN	1	0	Median	483410000	245800000	237610000	84110000	41120000	42990000	111250000	57716000	53533000	178800000	90457000	88344000	109250000	56506000	52740000	35832	1069	33907	220767;220768;220769;220770	297884;297885;297886;297887;297888;297889;297890;297891	297888			8	
MDDPTVNWSNERYEECK	1	Unmodified	2171.8888	0.88881793	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									1	2	3	48.299	47.615	3	0.00019035	40603	160511_QHF_FH_JSI11i_2	64.65	54.311			0.98231	1.0232	22.623	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84761	1.0085	NaN	1	0	Median	0.90186	0.91047	16.502	2	0	Median	1.233	1.3358	15.536	2	1	Median	343770000	179440000	164330000	0	0	0	76298000	37701000	38598000	160740000	97991000	62753000	106730000	43751000	62976000	35833	1069	33908	220771;220772;220773;220774;220775;220776	297892;297893;297894;297895;297896;297897	297897			6	
MDDREDLVYQAK	1	Acetyl (Protein N-term)	1523.6926	0.69260795	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	4.17	8	4	4			3				5	5	6	3	51.011	48.612	2;3	7.3063E-12	25820	160513_QHF_FH_JSI12Kac_3	72.79	56.899			0.91516	1.0193	277.03	15	7	Median	1.0296	0.84845	448.57	3	2	Median	0.883	1.0248	162.93	5	1	Median	1.1561	1.1006	368.82	4	3	Median	0.028767	0.030411	206.24	3	1	Plateau	19217000000	12183000000	7033800000	6012400000	2762200000	3250200000	3639100000	3442900000	196200000	6556900000	3072700000	3484100000	3008400000	2905100000	103290000	35834	1990	33909	220777;220778;220779;220780;220781;220782;220783;220784;220785;220786;220787;220788;220789;220790;220791;220792;220793;220794;220795	297898;297899;297900;297901;297902;297903;297904;297905;297906;297907;297908;297909;297910;297911;297912;297913;297914;297915;297916;297917	297914			20	
MDDREDLVYQAK	1	Acetyl (Protein N-term);Oxidation (M)	1539.6875	0.68752257	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	1	1	1	By matching	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				1	3	3	4	42.469	36.471	2;3	3.7949E-15	20138	160513_QHF_FH_JSI12Kac_3	101.32	90.797			1.0471	1.073	165.92	11	1	Median	1.5482	1.2647	NaN	1	0	Median	1.1354	1.3517	311.56	3	1	Median	1.0652	1.0413	3.9634	3	0	Plateau	1.014	1.0856	12.683	4	0	Median	2770700000	1057100000	1713500000	606370000	264900000	341480000	481350000	15040000	466310000	743620000	349160000	394460000	939300000	428020000	511280000	35835	1990	33909	220796;220797;220798;220799;220800;220801;220802;220803;220804;220805;220806	297918;297919;297920;297921;297922;297923;297924	297922		1656	7	
MDDTLFQLK	1	Acetyl (Protein N-term)	1151.5533	0.55326092	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	92.544	92.151	2	9.3733E-12	81962	160511_QHF_FH_JSI9i_1	112.17	102.18			0.93609	0.94536	2.3008	4	0	Median	1.1514	0.94872	NaN	1	0	Median	0.82942	0.98233	NaN	1	0	Median	0.96721	0.94202	NaN	1	0	Median	0.90596	0.93122	NaN	1	0	Median	432200000	219350000	212850000	112030000	53728000	58298000	95560000	51473000	44087000	126070000	62088000	63977000	98551000	52064000	46487000	35836	4873	33910	220807;220808;220809;220810	297925;297926;297927;297928;297929;297930;297931	297931			7	
MDEADRR	0	Acetyl (Protein N-term)	933.39743	0.39742898	1854	P55211	CASP9	Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10	yes	yes	0	1	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.23	10.74	2	0.0016679	8596	160511_QHF_FH_JSI12i_1	110.61	102.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35837	1854	33911	220811;220812;220813	297932;297933;297934	297932			3	
MDEAVGDLK	1	Acetyl (Protein N-term)	1018.4641	0.46411156	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	3.14	8			1						2	3	2	2	58.981	57.343	1;2	4.8637E-05	51963	160511_QHF_FH_JSI12i_1	59.245	48.372			1.0094	0.98489	8.2669	9	0	Median	1.1405	0.94737	13.146	2	0	Median	0.85113	0.98414	9.235	3	0	Median	1.0203	0.98769	0.40078	2	0	Median	0.99497	1.0368	8.9894	2	0	Median	1188800000	567370000	621460000	291960000	130700000	161250000	237720000	114460000	123260000	353860000	174600000	179270000	305290000	147610000	157670000	35838	2692	33912	220814;220815;220816;220817;220818;220819;220820;220821;220822	297935;297936;297937;297938;297939;297940;297941;297942;297943;297944	297938			10	
MDEDVLTTLK	1	Acetyl (Protein N-term)	1205.585	0.58495498	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.301	82.835	2	2.043E-11	75354	160511_QHF_FH_JSI12i_1	95.502	80.828			1.066	0.98517	8.2464	4	0	Median	1.1174	0.91156	NaN	1	0	Median	0.80152	0.93096	NaN	1	0	Median	1.1239	1.0773	NaN	1	0	Median	1.0169	1.0425	NaN	1	0	Median	409140000	201840000	207300000	102060000	44688000	57368000	103990000	51417000	52577000	105730000	54211000	51521000	97361000	51524000	45838000	35839	4884	33913	220823;220824;220825;220826	297945;297946;297947;297948;297949;297950;297951;297952	297948			8	
MDEEFTK	1	Unmodified	898.37423	0.37423392	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0		By MS/MS			1	0	1										1			21.189	20.921	2	0.0096908	18211	160511_QHF_FH_JSI10i_1	82.671	62.825			1.9499	2.3823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9499	2.3823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277810000	111230000	166580000	0	0	0	277810000	111230000	166580000	0	0	0	0	0	0	35840	40	33914	220827	297953	297953			1	
MDEISDHAK	1	Unmodified	1044.4546	0.45460951	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	11.399	10.709	2	0.00874	8193	160511_QHF_FH_JSI12i_2	60.91	43.67			0.87182	0.9586	153.48	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87182	0.9586	153.48	2	2	Median	33169000	16326000	16843000	0	0	0	0	0	0	0	0	0	33169000	16326000	16843000	35841	1839	33915	220828;220829	297954;297955	297954			2	
MDEKVFTK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1096.5111	0.51106176	2065	P67775	PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	yes	1	1	1	1			By MS/MS		12	0					1							1		51.334	41.956	2	0.022674	17534	160513_QHF_FH_JSI11Kac_2	39.022	29.808			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35842	2065	33916	220830	297956	297956	2138		1	
MDELQDVQLTEIK	1	Acetyl (Protein N-term)	1602.7811	0.78108861	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	93.984	93.753	2	4.5196E-10	85255	160511_QHF_FH_JSI11i_1	110.39	94.497			2.377	2.6822	28.228	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.377	2.6822	NaN	1	1	Median	4.695	4.4272	NaN	1	1	Median	2.5797	2.7511	NaN	1	1	Median	78125000	20588000	57536000	0	0	0	32371000	8688600	23682000	23453000	6850300	16602000	22301000	5049600	17251000	35843	5288	33917	220831;220832;220833;220834;220835	297957;297958;297959;297960;297961	297958			5	
MDELQLFR	0	Unmodified	1050.5168	0.51681584	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.57	4	4	4				1	3		3	4	4	5	69.808	66.595	2	1.1078E-14	58467	160511_QHF_FH_JSI11i_2	170.32	132.08			0.95353	0.98055	7.2481	16	3	Median	1.2089	0.97894	3.8522	3	0	Median	0.73095	0.87757	7.7505	4	0	Median	0.9516	0.99049	5.9374	4	2	Linear	0.93148	1.012	4.8529	5	1	Median	4857500000	2432000000	2425500000	975590000	436930000	538660000	1213800000	683360000	530390000	1679900000	807240000	872690000	988250000	504470000	483770000	35844	1846	33918	220836;220837;220838;220839;220840;220841;220842;220843;220844;220845;220846;220847;220848;220849;220850;220851	297962;297963;297964;297965;297966;297967;297968;297969;297970;297971;297972;297973;297974;297975;297976;297977;297978;297979;297980;297981;297982;297983;297984;297985;297986	297979			25	
MDELQLFR	0	Oxidation (M)	1066.5117	0.51173046	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0			By matching	By MS/MS	14.5	0.5							1	1				1	1	67.524	56.717	2	0.015574	31052	160513_QHF_FH_JSI12Kac_4	57.281	45.913			0.72664	0.74458	8.4426	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72667	0.70143	NaN	1	0	Median	0.72661	0.79038	NaN	1	0	Median	6172500	3542000	2630500	0	0	0	0	0	0	2118800	1269600	849230	4053700	2272400	1781300	35845	1846	33918	220852;220853	297987	297987		1527	1	
MDELQLFRGDTVLLK	1	Unmodified	1776.9444	0.94440596	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	90.005	89.427	3	0.00058131	78607	160511_QHF_FH_JSI11i_2	47.545	40.137			1.1463	1.1033	18.714	4	1	Median	1.2221	1.0772	NaN	1	1	Median	1.2969	1.5834	NaN	1	0	Median	1.0752	1.071	NaN	1	0	Median	1.0345	1.13	NaN	1	0	Median	174220000	79949000	94274000	31137000	13684000	17453000	54630000	21725000	32905000	30530000	14114000	16416000	57925000	30426000	27500000	35846	1846	33919	220854;220855;220856;220857	297988;297989;297990;297991	297990			4	
MDEMATTQISK	1	Acetyl (Protein N-term)	1295.5737	0.57373837	1039	P13797	PLS3	Plastin-3	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	5	4.9	3			2							1	3	1	55.875	55.385	2	2.5042E-05	50241	160511_QHF_FH_JSI12i_1	62.005	55.702			1.1344	1.3454	17.228	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1344	1.347	NaN	1	0	Median	1.378	1.3454	NaN	1	0	Median	0.95507	0.99889	NaN	1	0	Median	145010000	67885000	77127000	0	0	0	45219000	15060000	30159000	53920000	27151000	26769000	45873000	25674000	20199000	35847	1039	33920	220858;220859;220860;220861;220862	297992;297993;297994;297995	297992			3	
MDEMATTQISKDELDELK	2	Acetyl (Protein N-term)	2137.9759	0.9759016	1039	P13797	PLS3	Plastin-3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	1	4	2	83.881	83.403	2;3	3.7384E-100	74095	160511_QHF_FH_JSI9i_1	143.25	143.25			1.0006	0.93337	112.4	9	4	Median	0.49419	0.40376	99.8	2	1	Median	0.78539	0.93337	NaN	1	0	Median	0.54123	0.53124	161.4	4	3	Median	1.1177	1.1834	14.024	2	0	Median	1370300000	737790000	632540000	303770000	174160000	129610000	227910000	127900000	100010000	450780000	259490000	191290000	387860000	176240000	211620000	35848	1039	33921	220863;220864;220865;220866;220867;220868;220869;220870;220871	297996;297997;297998;297999;298000;298001;298002;298003;298004;298005;298006;298007;298008;298009;298010;298011;298012;298013;298014;298015;298016;298017	298014			22	
MDENQFVAVTSTNAAK	1	Unmodified	1724.8039	0.80394931	2739	Q16555;Q14195;Q14194	DPYSL2;DPYSL3;CRMP1	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									4	4	3	3	53.931	53.249	2;3	4.775E-19	48250	160511_QHF_FH_JSI11i_1	212.1	167.34			1.0885	1.0946	16.763	14	12	Median	1.2388	1.0052	13.37	4	4	Median	0.62941	0.73956	17.619	4	4	Linear	1.2606	1.244	8.0362	3	2	Median	1.0452	1.094	13.562	3	2	Median	2579700000	1263400000	1316400000	630730000	294110000	336620000	689910000	382760000	307140000	587250000	247400000	339850000	671820000	339070000	332750000	35849	2739	33922	220872;220873;220874;220875;220876;220877;220878;220879;220880;220881;220882;220883;220884;220885	298018;298019;298020;298021;298022;298023;298024;298025;298026;298027;298028;298029;298030;298031;298032;298033;298034	298020			17	
MDEPSPLAQPLELNQHSR	0	Acetyl (Protein N-term)	2103.0055	0.0055026685	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	3											1	2	75.247	74.769	2	5.6913E-17	68030	160511_QHF_FH_JSI11i_1	124.81	115.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35850	2348	33923	220886;220887;220888	298035;298036;298037	298035			3	
MDEQALLGLNPNADSDFR	0	Acetyl (Protein N-term)	2046.9317	0.93166902	344	O43592	XPOT	Exportin-T	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.24	100.11	2	1.0115E-12	88541	160511_QHF_FH_JSI9i_1	175.74	163.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35851	344	33924	220889;220890;220891;220892	298038;298039;298040;298041;298042;298043;298044	298044			7	
MDETDASSAVK	1	Unmodified	1152.4969	0.49686826	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.31	18.813	2	4.4981E-13	16234	160511_QHF_FH_JSI12i_1	147.75	134.72			0.8672	0.9254	9.8439	4	0	Median	1.2655	1.0141	NaN	1	0	Median	0.77131	0.90266	NaN	1	0	Median	0.97501	0.94872	NaN	1	0	Median	0.75019	0.80315	NaN	1	0	Median	1078000000	513460000	564550000	243760000	97797000	145960000	304110000	176320000	127790000	265570000	108330000	157240000	264570000	131010000	133560000	35852	2360	33925	220893;220894;220895;220896	298045;298046;298047;298048;298049;298050;298051	298047			7	
MDETDASSAVK	1	Oxidation (M)	1168.4918	0.49178288	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	1	0			By MS/MS		12	0					1							1		12.662	5.4265	2	0.0032938	4285	160513_QHF_FH_JSI11Kac_2	62.303	49.249			1.2011	1.1073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2011	1.1073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3415200	1314100	2101100	0	0	0	0	0	0	3415200	1314100	2101100	0	0	0	35853	2360	33925	220897	298052	298052		1927	1	
MDFEDDYTHSACR	0	Acetyl (Protein N-term)	1687.6243	0.62427039	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	55.223	54.562	2	0.00024348	49532	160511_QHF_FH_JSI12i_1	78.096	77.664			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35854	2880	33926	220898	298053	298053			1	
MDFILSHAVYCR	0	Unmodified	1510.7061	0.70608995	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	2	3	2	73.427	66.409	2;3	1.4657E-49	36545	160513_QHF_FH_JSI10Kac_6	187.97	172.08			1.0172	0.99236	18.426	6	0	Median	1.3322	1.1374	NaN	1	0	Median	0.79995	0.94516	7.55	2	0	Median	1.0172	0.96705	2.995	2	0	Median	1.3848	1.488	NaN	1	0	Median	560390000	283350000	277040000	90020000	41069000	48951000	211990000	116510000	95480000	167290000	86189000	81098000	91091000	39578000	51513000	35855	5135	33927	220899;220900;220901;220902;220903;220904;220905;220906	298054;298055;298056;298057;298058;298059;298060;298061;298062;298063;298064	298063			11	
MDFLLGNPFSSPVGQR	0	Acetyl (Protein N-term)	1805.8771	0.87705468	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	103.08	103	2	4.406E-10	93603	160511_QHF_FH_JSI12i_1	180.24	163.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35856	448	33928	220907;220908;220909	298065;298066;298067	298066			3	
MDFQHRPGGK	1	Acetyl (Protein N-term)	1213.5662	0.56622565	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	4	4	3	24.084	23.497	2;3	2.6108E-06	19440	160511_QHF_FH_JSI12i_3	67.169	57.786			0.9781	1.0716	17.863	11	0	Median	1.4481	1.2505	5.9701	2	0	Median	0.84313	0.97031	14.045	2	0	Median	1.0335	1.0065	16.545	4	0	Median	0.91238	0.93747	26.455	3	0	Plateau	1481700000	759550000	722160000	151930000	57790000	94144000	165320000	88292000	77033000	772830000	391340000	381480000	391620000	222120000	169500000	35857	2672	33929	220910;220911;220912;220913;220914;220915;220916;220917;220918;220919;220920;220921;220922	298068;298069;298070;298071;298072;298073;298074;298075;298076;298077;298078;298079;298080;298081;298082;298083;298084	298084			16	
MDFQHRPGGK	1	Acetyl (Protein N-term);Oxidation (M)	1229.5611	0.56114027	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	24.026	23.466	3	0.004729	19424	160511_QHF_FH_JSI12i_3	42.743	33.311			0.97663	1.0441	25.756	5	0	Median	1.237	1.0421	NaN	1	0	Median	0.91627	1.1224	10.234	2	0	Median	0.67788	0.62102	NaN	1	0	Median	1.0021	1.0625	NaN	1	0	Median	224460000	113690000	110770000	50317000	23932000	26385000	58825000	29224000	29601000	40832000	22747000	18085000	74482000	37782000	36701000	35858	2672	33929	220923;220924;220925;220926;220927	298085;298086;298087;298088;298089	298089		2095	5	
MDFSKLPK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1064.5212	0.52123251	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	1	1	1	1		By MS/MS		By MS/MS	12	0					3						1		2	66.807	57.395	2	0.00058451	25368	160513_QHF_FH_JSI12Kac_2	61.999	54.769			0.44039	0.45445	66.694	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4016	1.6425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53599	0.56029	34.422	2	0	Median	14879000	9000200	5879000	0	0	0	2424900	1175700	1249200	0	0	0	12454000	7824500	4629800	35859	1479	33930	220928;220929;220930	298090;298091;298092;298093	298092	1467	1149	3	
MDFSKLPK	2	Acetyl (K);Acetyl (Protein N-term)	1048.5263	0.52631789	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	1	1	0	1		By MS/MS			12	0					1						1			81.486	73.195	2	0.009006	30289	160513_QHF_FH_JSI10Kac_2	55.37	48.546			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35860	1479	33930	220931	298094	298094	1467		1	
MDFSLPPSTYATMAIR	0	Unmodified	1799.8586	0.85862742	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.042	94.372	2	0.0022115	81346	160511_QHF_FH_JSI12i_2	55.452	31.109			0.80164	0.88482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80164	0.88482	NaN	1	0	Median	21171000	10158000	11012000	0	0	0	0	0	0	0	0	0	21171000	10158000	11012000	35861	4202	33931	220932	298095	298095			1	
MDFTAQPK	1	Acetyl (Protein N-term)	978.44807	0.44806757	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	51.096	50.158	2	0.001388	45602	160511_QHF_FH_JSI12i_1	67.981	56.076			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35862	2789	33932	220933;220934	298096;298097	298096			2	
MDGAASQGK	1	Unmodified	863.38072	0.38071629	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		5.0041	4.6993	2	0.0019789	2691	160511_QHF_FH_JSI10i_1	66.692	38.474			0.7684	0.81005	7.0056	3	0	Plateau	0.97703	0.81005	NaN	1	0	Median	0.7684	0.91331	NaN	1	0	Median	0.82766	0.80788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1113900000	580730000	533170000	192980000	117770000	75207000	569880000	314580000	255300000	351040000	148370000	202670000	0	0	0	35863	2660	33933	220935;220936;220937	298098;298099	298099			2	
MDGAPDGR	0	Unmodified	817.33885	0.33885147	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.2726	7.9124	2	0.0059403	5851	160511_QHF_FH_JSI12i_1	60.682	50.932			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35864	403	33934	220938	298100	298100			1	
MDGEEQQPPHEANVEPVVPSEASEPVPR	0	Acetyl (Protein N-term)	3095.4142	0.41420784	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	65.977	65.284	3	9.5372E-13	59330	160511_QHF_FH_JSI11i_1	78.45	76.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35865	4721	33935	220939;220940;220941	298101;298102;298103;298104	298101			4	
MDGGDDGNLIIKK	2	Acetyl (Protein N-term)	1416.6919	0.69187967	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.336	52.668	2	0.00012379	47385	160511_QHF_FH_JSI10i_1	58.676	42.795			1.3658	1.3037	61.506	4	1	Median	1.4584	1.2098	NaN	1	0	Median	1.4161	1.7125	NaN	1	0	Median	0.44375	0.43145	NaN	1	1	Median	1.3173	1.4049	NaN	1	0	Median	384250000	213820000	170430000	67047000	30085000	36961000	80098000	39729000	40369000	145560000	103880000	41682000	91545000	40128000	51417000	35866	4610	33936	220942;220943;220944;220945	298105;298106;298107;298108	298107			4	
MDGIVPDIAVGTK	1	Acetyl (Protein N-term)	1356.6959	0.69590241	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.847	94.525	2	4.1773E-06	86001	160511_QHF_FH_JSI11i_1	85.813	67.949			1.0151	1.0244	6.2068	4	0	Median	1.1088	0.9184	NaN	1	0	Median	0.88755	1.0558	NaN	1	0	Median	1.0787	1.0366	NaN	1	0	Median	0.95529	1.0123	NaN	1	0	Median	2154200000	1062700000	1091500000	499750000	237110000	262640000	433810000	227660000	206150000	591060000	270100000	320960000	629600000	327880000	301720000	35867	1281	33937	220946;220947;220948;220949	298109;298110;298111;298112;298113;298114;298115;298116;298117	298111			9	
MDGIVPDIAVGTK	1	Acetyl (Protein N-term);Oxidation (M)	1372.6908	0.69081704	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	10	4.04	1			1	4						1	2	3	79.629	72.986	2	0.00014868	31180	160513_QHF_FH_JSI12Kac_2	83.045	71.894			0.86691	0.99454	68.866	3	1	Median	NaN	NaN	NaN	0	0	Median	0.86691	0.99454	NaN	1	0	Median	0.31401	0.30615	NaN	1	1	Median	0.96493	1.0235	NaN	1	0	Median	71675000	49465000	22211000	0	0	0	4519000	2480000	2039000	43461000	32668000	10793000	23695000	14316000	9378600	35868	1281	33937	220950;220951;220952;220953;220954;220955	298118;298119;298120;298121;298122	298121		915	5	
MDGLLNPR	0	Acetyl (Protein N-term)	956.47495	0.47495102	2952	Q5T6V5	C9orf64	UPF0553 protein C9orf64	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.329	68.77	2	0.00026252	62574	160511_QHF_FH_JSI11i_1	117.17	81.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35869	2952	33938	220956;220957;220958;220959	298123;298124;298125;298126;298127	298123			5	
MDGTYACSYTPVK	1	Unmodified	1491.6374	0.63740126	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.361	40.717	2	5.0844E-22	36898	160511_QHF_FH_JSI12i_1	172.8	136.38			0.65046	0.69306	42.593	4	1	Median	0.50823	0.40522	NaN	1	1	Median	0.63987	0.74805	NaN	1	0	Median	0.66121	0.64212	NaN	1	0	Median	1.083	1.1369	NaN	1	0	Median	249250000	129260000	119980000	25362000	18699000	6662800	57523000	30441000	27083000	88354000	50891000	37463000	78006000	29233000	48773000	35870	512	33939	220960;220961;220962;220963	298128;298129;298130;298131;298132	298129			5	
MDHVYGLSTVYLNK	1	Unmodified	1638.8076	0.80757813	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				69.487	60.828	3	0.0087469	32261	160513_QHF_FH_JSI9Kac_6	48.112	36.498			1.352	1.1743	NaN	1	1	Median	1.352	1.1743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10123000	4402400	5720800	10123000	4402400	5720800	0	0	0	0	0	0	0	0	0	35871	5458	33940	220964	298133	298133			1	
MDIDAPDVEVQGPDWHLK	1	Unmodified	2063.9622	0.96224087	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	80.637	79.864	3	3.5274E-05	68895	160511_QHF_FH_JSI12i_2	70.783	65.979			1.3061	1.3208	13.365	5	2	Median	1.5023	1.3208	NaN	1	0	Median	1.0392	1.2568	20.456	2	2	Median	1.3061	1.2917	NaN	1	0	Median	1.3599	1.5442	NaN	1	0	Median	247240000	115540000	131700000	32404000	11583000	20821000	105470000	58375000	47099000	54541000	23685000	30856000	54822000	21896000	32926000	35872	2286	33941	220965;220966;220967;220968;220969	298134;298135;298136;298137;298138	298134			5	
MDIDVPDVEVQGPDWHLK	1	Unmodified	2091.9935	0.993541	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.272	89.401	3	0.0014342	77203	160511_QHF_FH_JSI12i_2	50.178	38.535			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35873	2286	33942	220970	298139	298139			1	
MDIETNDTFSDEAVPESSK	1	Unmodified	2113.8998	0.89975977	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	60.253	59.73	2	3.3967E-17	54276	160511_QHF_FH_JSI12i_1	177.84	162.46			0.89132	0.92656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89132	0.92656	NaN	1	1	Median	33096000	28804000	4292000	0	0	0	13629000	13629000	0	0	0	0	19467000	15175000	4292000	35874	462	33943	220971;220972	298140;298141	298140			2	
MDILAQVLQILLK	1	Unmodified	1496.9	0.90002195	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	1	2	4	3	104.44	99.222	2;3	2.8072E-74	54349	160513_QHF_FH_JSI11Kac_6	225.31	162.48			0.66158	0.79083	33.888	3	3	Median	NaN	NaN	NaN	0	0	Median	0.66158	0.79083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60795	0.64774	45.068	2	2	Median	1010100000	616060000	394020000	0	0	0	716570000	385410000	331160000	0	0	0	293510000	230650000	62861000	35875	2453	33944	220973;220974;220975;220976;220977;220978;220979;220980;220981;220982	298142;298143;298144;298145;298146;298147;298148;298149;298150;298151	298144			10	
MDIRPNHTIYINNMNDK	1	Acetyl (Protein N-term)	2129.9986	0.99864315	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	2	4	6	2	63.783	59.936	2;3	4.1051E-24	32845	160513_QHF_FH_JSI10Kac_6	63.145	46.839			1.0669	1.0775	8.9067	8	0	Median	1.2824	1.0944	3.9062	2	0	Median	1.0479	1.2661	5.2306	2	0	Median	1.0669	1.031	3.564	2	0	Median	1.0242	1.0671	3.0854	2	0	Median	1493300000	690110000	803220000	274700000	119280000	155420000	398150000	204730000	193420000	565550000	247650000	317900000	254930000	118460000	136470000	35876	906	33945	220983;220984;220985;220986;220987;220988;220989;220990;220991;220992;220993;220994;220995;220996	298152;298153;298154;298155;298156;298157;298158;298159;298160;298161;298162;298163;298164;298165;298166;298167	298167			16	
MDIRPNHTIYINNMNDK	1	Acetyl (Protein N-term);Oxidation (M)	2145.9936	0.99355777	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		2	2					1	2	1	3	1	2	54.852	50.417	3	0.00012621	40771	160511_QHF_FH_JSI12i_3	39.657	20.873			1.483	1.4076	102.12	5	4	Median	4.0694	3.3457	NaN	1	1	Median	1.521	1.8683	175.75	2	2	Median	1.483	1.4076	NaN	1	1	Median	0.76643	0.79778	NaN	1	0	Median	127470000	46640000	80834000	1917900	182830	1735000	52981000	20637000	32343000	29422000	7825100	21597000	43154000	17995000	25158000	35877	906	33945	220997;220998;220999;221000;221001;221002;221003	298168;298169;298170;298171;298172;298173;298174;298175;298176	298173		488;489	9	
MDIRPNHTIYINNMNDK	1	Acetyl (Protein N-term);2 Oxidation (M)	2161.9885	0.9884724	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	1	2	1				By MS/MS	15	0								1					1	49.781	39.384	3	0.0065739	20500	160513_QHF_FH_JSI12Kac_5	53.565	44.741			0.24206	0.25763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24206	0.25763	NaN	1	1	Median	3608600	3188700	419920	0	0	0	0	0	0	0	0	0	3608600	3188700	419920	35878	906	33945	221004	298177	298177		488;489	1	
MDKNELVQK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1203.5805	0.58053831	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	45.019	35.967	2	2.9349E-12	14924	160513_QHF_FH_JSI10Kac_1	130.27	97.431			0.51149	0.54969	60.457	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0958	1.2747	6.8524	2	0	Median	0.35097	0.3386	14.752	2	0	Median	0.51149	0.54969	3.6715	2	0	Median	43049000	28440000	14608000	0	0	0	10829000	5019800	5809700	19100000	14038000	5061900	13119000	9382300	3736700	35879	2051	33946	221005;221006;221007;221008;221009;221010	298178;298179;298180;298181;298182;298183;298184;298185;298186;298187;298188	298186	2115;2116	1716	11	
MDLAAAAEPGAGSQHLEVR	0	Acetyl (Protein N-term)	1963.9422	0.94217413	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	69.86	69.369	2	2.9585E-14	63153	160511_QHF_FH_JSI12i_1	144.27	126.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35880	2545	33947	221011;221012	298189;298190	298190			2	
MDLAAAAEPGAGSQHLEVRDEVAEK	1	Acetyl (Protein N-term)	2635.2548	0.25479408	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	68.552	67.65	3	9.6359E-17	59129	160511_QHF_FH_JSI11i_2	71.678	68.215			0.87338	0.88575	131.73	3	1	Median	NaN	NaN	NaN	0	0	Median	0.082059	0.10132	NaN	1	1	Median	0.87338	0.88575	NaN	1	0	Median	1.0002	1.0951	NaN	1	0	Median	457790000	264880000	192900000	0	0	0	77727000	69893000	7833500	195310000	97317000	97996000	184750000	97672000	87074000	35881	2545	33948	221013;221014;221015;221016	298191;298192;298193;298194	298192			4	
MDLAAAAEPGAGSQHLEVRDEVAEK	1	Acetyl (Protein N-term);Oxidation (M)	2651.2497	0.2497087	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	1	1	1		By MS/MS			1	0	1										1			57.396	57.002	3	0.0059975	51465	160511_QHF_FH_JSI10i_1	30.925	22.836			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35882	2545	33948	221017	298195	298195		2006	1	
MDLADLTEQQK	1	Unmodified	1290.6126	0.61256672	4407	Q9BT17	MTG1	Mitochondrial ribosome-associated GTPase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		59.222	58.451	2	0.005264	51859	160511_QHF_FH_JSI9i_1	53.597	43.942			0.94924	0.83966	1.7811	2	1	Median	1.043	0.8503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86391	0.82915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117730000	53537000	64193000	55924000	24931000	30993000	0	0	0	61806000	28606000	33200000	0	0	0	35883	4407	33949	221018;221019	298196;298197	298197			2	
MDLAPSK	1	Unmodified	760.37893	0.37892537	1298	P27816	MAP4	Microtubule-associated protein 4	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		21.8	21.6	2	0.030864	18567	160511_QHF_FH_JSI11i_1	53.754	40.766			0.69084	0.75536	95.3	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2269	1.4819	NaN	1	0	Median	0.38899	0.38503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1067600000	649570000	418010000	0	0	0	625460000	311690000	313770000	442120000	337880000	104240000	0	0	0	35884	1298	33950	221020;221021	298198;298199	298198			2	
MDLAPSKDMGPPK	2	Acetyl (K)	1427.6789	0.67887214	1298	P27816	MAP4	Microtubule-associated protein 4	yes	no	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	64.959	55.612	2	0.0054728	28221	160513_QHF_FH_JSI10Kac_3	69.979	43.381			0.7757	0.86694	201.85	2	2	Median	NaN	NaN	NaN	0	0	Median	3.1449	3.613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19133	0.20802	NaN	1	1	Median	5563800	3598900	1964900	0	0	0	2353500	615960	1737500	0	0	0	3210400	2983000	227400	35885	1298	33951	221022;221023	298200;298201	298201	1233		2	
MDLDEQLK	1	Unmodified	990.4692	0.46919694	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	41.489	41.034	2	0.0070881	37291	160511_QHF_FH_JSI12i_1	60.59	26.793			0.88429	0.85144	23.264	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52789	0.62144	NaN	1	0	Median	0.88429	0.85144	NaN	1	0	Median	0.95614	0.97861	NaN	1	0	Median	208860000	128150000	80711000	0	0	0	68341000	47321000	21020000	73350000	43758000	29593000	67167000	37069000	30098000	35886	116	33952	221024;221025;221026	298202;298203	298203			2	
MDLFSALIK	1	Unmodified	1036.5627	0.5627034	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		98.152	98	2	0.0019951	86065	160511_QHF_FH_JSI11i_2	66.621	56.207			0.62412	0.59846	19.277	3	0	Plateau	1.0187	0.86116	NaN	1	0	Median	0.51925	0.64299	NaN	1	0	Median	0.62412	0.59846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35037000	19531000	15506000	10061000	4822000	5239000	10071000	5977400	4093800	14905000	8731400	6173600	0	0	0	35887	4582	33953	221027;221028;221029	298204;298205;298206;298207;298208	298206			5	
MDLGAITK	1	Acetyl (Protein N-term)	889.4579	0.45790397	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	68.342	67.728	1	0.0038421	61784	160511_QHF_FH_JSI12i_1	34.253	19.477			0.96286	1.0148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96286	1.0148	NaN	1	0	Median	21740000	12032000	9708800	0	0	0	0	0	0	0	0	0	21740000	12032000	9708800	35888	690	33954	221030	298209	298209			0	
MDLGAITKYSALHAK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1717.8709	0.87090667	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	1	1	1	1			By MS/MS		15	0								1				1		80.452	69.885	2	2.7755E-05	37072	160513_QHF_FH_JSI11Kac_5	50.675	41.946			0.44502	0.42098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44502	0.42098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2323500	1523100	800390	0	0	0	0	0	0	2323500	1523100	800390	0	0	0	35889	690	33955	221031	298210	298210	347	243	1	
MDLGECLK	1	Unmodified	964.43579	0.43578832	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	44.473	43.954	2	0.014487	39648	160511_QHF_FH_JSI11i_1	51.346	21.161			1.1105	1.1173	27.505	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94774	0.91984	NaN	1	0	Median	1.3013	1.3572	NaN	1	0	Median	157100000	89045000	68054000	0	0	0	0	0	0	81408000	46837000	34572000	75690000	42208000	33482000	35890	5562	33956	221032;221033	298211	298211			1	
MDLNSASTVVLQVLTQATSQDTAVLK	1	Acetyl (Protein N-term)	2774.4372	0.43717512	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	1	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	104.41	104.34	3	4.6613E-10	94879	160511_QHF_FH_JSI12i_1	48.867	45.34			0.592	0.60712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.592	0.60712	NaN	1	0	Median	21751000	11555000	10196000	0	0	0	9843900	5902200	3941700	2989200	0	2989200	8918000	5653000	3265000	35891	5323	33957	221034;221035;221036	298212;298213	298213			2	
MDLNSEQAEQLER	0	Unmodified	1561.7042	0.70423527	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.69	45.017	2	4.3952E-82	40063	160511_QHF_FH_JSI9i_1	247.13	230.88			1.0002	1.0974	7.335	4	0	Median	1.354	1.1021	NaN	1	0	Median	0.93881	1.0926	NaN	1	0	Median	0.97295	0.94998	NaN	1	0	Median	1.0283	1.1045	NaN	1	0	Median	1372500000	722080000	650420000	304610000	151820000	152790000	336830000	191670000	145160000	350590000	173510000	177080000	380470000	205080000	175390000	35892	2844	33958	221037;221038;221039;221040	298214;298215;298216;298217;298218;298219;298220	298220			7	
MDLPDAQDK	1	Unmodified	1031.4594	0.45936054	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.704	32.128	2	0.030587	28932	160511_QHF_FH_JSI12i_1	48.091	34.713			0.47514	0.50521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47514	0.50521	NaN	1	1	Median	42952000	27613000	15339000	0	0	0	0	0	0	0	0	0	42952000	27613000	15339000	35893	17	33959	221041	298221	298221			1	
MDLQIGTEK	1	Unmodified	1033.5114	0.51139611	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.375	43.153	2	0.049608	38346	160511_QHF_FH_JSI9i_1	44.318	33.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7728900	0	7728900	7728900	0	7728900	0	0	0	0	0	0	0	0	0	35894	2584	33960	221042	298222	298222			1	
MDLSELERDNTGR	0	Acetyl (Protein N-term)	1576.7151	0.71513431	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	1	0	1	By MS/MS	By MS/MS			1	0	2									1	1			64.309	63.6	2	0.00010004	57542	160511_QHF_FH_JSI10i_1	96.626	80.997			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35895	565	33961	221043;221044	298223;298224	298223			2	
MDLSGVK	1	Acetyl (Protein N-term)	790.38949	0.38949006	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	49.292	48.7	1;2	0.00052396	43989	160511_QHF_FH_JSI10i_1	52.636	21.968			0.9152	0.85449	12.07	6	0	Median	0.96408	0.79954	NaN	1	0	Median	0.7441	0.85649	21.714	2	0	Median	0.95331	0.92756	2.2036	2	0	Median	0.77051	0.78426	NaN	1	0	Median	432800000	229630000	203170000	98654000	47161000	51493000	130210000	79118000	51093000	116080000	61208000	54871000	87854000	42139000	45715000	35896	2650	33962	221045;221046;221047;221048;221049;221050;221051;221052	298225;298226;298227;298228;298229;298230;298231	298231			5	
MDLVTYFGK	1	Unmodified	1072.5263	0.52631789	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.67	2	3						4		2	4	2	1	77.933	72.406	2	0.0041286	67861	160511_QHF_FH_JSI10i_1	68.224	46.923			1.2189	1.1817	27.714	8	4	Median	1.5038	1.2768	18.527	2	1	Median	1.39	1.684	23.6	3	2	Plateau	1.5385	1.5227	56.693	2	1	Median	1.0315	1.1176	NaN	1	0	Median	496580000	118830000	377760000	129300000	24867000	104440000	148880000	46310000	102570000	215510000	46024000	169490000	2886000	1626100	1260000	35897	933	33963	221053;221054;221055;221056;221057;221058;221059;221060;221061	298232;298233;298234;298235;298236;298237;298238;298239;298240	298233			9	
MDMEEIIQR	0	Unmodified	1163.5315	0.53147962	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.67	0.471	2	4								1	2	2	1	60.802	60.053	2	3.6366E-06	51391	160511_QHF_FH_JSI12i_2	122.19	104.34			0.87937	0.95515	7.4968	6	1	Plateau	1.1012	0.94041	NaN	1	0	Median	0.73851	0.87954	11.129	2	1	Median	0.90813	0.90743	7.0009	2	0	Median	0.88073	0.99386	NaN	1	0	Median	934290000	474450000	459840000	137900000	65649000	72247000	256120000	147730000	108400000	388650000	188060000	200590000	151630000	73014000	78611000	35898	4619	33964	221062;221063;221064;221065;221066;221067	298241;298242;298243	298241			3	
MDMSLDDIIK	1	Unmodified	1179.5515	0.55154636	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	83.789	83.188	2	3.082E-15	74108	160511_QHF_FH_JSI9i_1	168.8	141.05			0.98648	0.95895	6.8554	8	0	Median	1.1018	0.93199	1.8329	2	0	Median	0.77674	0.94484	4.2961	2	0	Median	1.0453	1.0356	1.4044	2	0	Median	0.85794	0.91146	10.771	2	0	Median	2190500000	1142300000	1048200000	365570000	171470000	194100000	726340000	417950000	308390000	522470000	268840000	253620000	576130000	284050000	292080000	35899	3337	33965	221068;221069;221070;221071;221072;221073;221074;221075	298244;298245;298246;298247;298248;298249;298250;298251;298252;298253;298254;298255;298256;298257;298258;298259;298260;298261;298262;298263;298264;298265;298266	298258			23	
MDNLKYVNQLK	2	Acetyl (K)	1406.7228	0.72278587	1660	P49454	CENPF	Centromere protein F	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	69.14	58.752	2	1.7161E-19	32239	160513_QHF_FH_JSI11Kac_4	161.76	135.25			1.5972	1.806	54.714	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2837	1.5315	NaN	1	0	Median	1.3153	1.2872	NaN	1	0	Median	2.7979	3.0736	51.879	2	2	Median	46610000	22107000	24503000	0	0	0	20826000	12620000	8206300	12076000	5305900	6769700	13708000	4181700	9526700	35900	1660	33966	221076;221077;221078;221079	298267;298268;298269;298270	298268	1684		4	
MDNLKYVNQLK	2	Acetyl (K);Oxidation (M)	1422.7177	0.71770049	1660	P49454	CENPF	Centromere protein F	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13.5	0.5						1	1				1		1	61.393	51.439	2	0.039176	27275	160513_QHF_FH_JSI12Kac_3	36.525	29.835			1.317	1.4856	40.584	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7098	1.9794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0145	1.115	NaN	1	0	Median	4029400	1781400	2248000	0	0	0	1602000	583420	1018600	0	0	0	2427300	1198000	1229400	35901	1660	33966	221080;221081	298271;298272	298272	1684		2	
MDNLSSEEIQQR	0	Acetyl (Protein N-term)	1490.6671	0.66712148	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.574	52.823	2	4.206E-06	47860	160511_QHF_FH_JSI11i_1	127.93	112.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35902	101	33967	221082;221083;221084	298273;298274;298275	298273			3	
MDNYADLSDTELTTLLR	0	Acetyl (Protein N-term)	2011.9408	0.94083673	1703	P50402	EMD	Emerin	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		102.15	102.1	2	3.6672E-13	92875	160511_QHF_FH_JSI10i_1	222.81	213.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35903	1703	33968	221085;221086	298276;298277	298277			2	
MDNYADLSDTELTTLLRR	0	Acetyl (Protein N-term)	2168.0419	0.041947754	1703	P50402	EMD	Emerin	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	2										1	1		101.27	101.21	2	1.9619E-38	91920	160511_QHF_FH_JSI10i_1	290.23	269.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35904	1703	33969	221087;221088	298278;298279	298279			2	
MDNYADLSDTELTTLLRR	0	Acetyl (Protein N-term);Oxidation (M)	2184.0369	0.036862376	1703	P50402	EMD	Emerin	yes	yes	0	1	1	1		By MS/MS			1	0	1										1			95.838	95.853	2	0.035624	86797	160511_QHF_FH_JSI10i_1	30.438	17.671			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35905	1703	33969	221089	298280	298280			1	
MDPAEEDTNVYTEK	1	Unmodified	1640.6876	0.68758215	1413	P34741	SDC2	Syndecan-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	37.74	37.223	2	4.3146E-05	33319	160511_QHF_FH_JSI10i_1	117.79	82.568			1.3341	1.4142	36.175	6	6	Median	2.1334	1.6878	NaN	1	1	Median	1.6258	1.8953	41.854	2	2	Median	1.2396	1.2196	21.378	2	2	Median	0.90501	0.91772	NaN	1	1	Median	178740000	66752000	111990000	26109000	8153600	17956000	79766000	22795000	56970000	54707000	27677000	27030000	18157000	8125900	10031000	35906	1413	33970	221090;221091;221092;221093;221094;221095	298281;298282;298283;298284;298285;298286;298287	298286			7	
MDPEGSK	1	Unmodified	762.3218	0.32180442	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.2202	6.109	2	0.013531	3909	160511_QHF_FH_JSI11i_1	69.998	48.452			1.8893	1.8688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8893	1.8688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	229600000	75296000	154300000	0	0	0	0	0	0	229600000	75296000	154300000	0	0	0	35907	4850	33971	221096	298288	298288			1	
MDPLFQQTHK	1	Acetyl (Protein N-term)	1285.6125	0.61250714	184	O14653	GOSR2	Golgi SNAP receptor complex member 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		57.891	57.483	2	4.3154E-06	52102	160511_QHF_FH_JSI11i_1	112.11	98.338			0.94281	1.0051	34.98	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1072	1.2871	NaN	1	0	Median	0.80282	0.78481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	107120000	57000000	50116000	0	0	0	49647000	26199000	23448000	57468000	30800000	26668000	0	0	0	35908	184	33972	221097;221098	298289;298290;298291	298289			3	
MDPLSELQDDLTLDDTSEALNQLK	1	Acetyl (Protein N-term)	2745.2902	0.29023611	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	103.02	102.89	3	0.00016369	93544	160511_QHF_FH_JSI12i_1	30.306	27.264			1.9909	2.0291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9909	2.0291	NaN	1	0	Median	32443000	11993000	20450000	0	0	0	0	0	0	0	0	0	32443000	11993000	20450000	35909	2261	33973	221099	298292	298292			1	
MDPMNIWDDIITNR	0	Unmodified	1732.7913	0.79127614	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.94	101.83	3	1.5258E-05	90418	160511_QHF_FH_JSI10i_2	92.939	85.348			1.0068	1.0629	6.6612	4	0	Median	1.349	1.1688	NaN	1	0	Median	0.83617	1.0033	NaN	1	0	Median	1.016	1.036	NaN	1	0	Median	0.9976	1.0904	NaN	1	0	Median	662530000	342800000	319730000	134520000	61189000	73336000	149410000	80869000	68538000	189860000	104870000	84991000	188750000	95879000	92867000	35910	2094	33974	221100;221101;221102;221103	298293;298294;298295;298296	298296			4	
MDPNFMENEEK	1	Unmodified	1382.5483	0.5482519	4857	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	46.002	45.064	2	0.0015656	40419	160511_QHF_FH_JSI10i_1	67.334	43.304			1.1334	1.0421	28.553	2	1	Median	1.5312	1.2753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83888	0.8516	NaN	1	0	Median	51667000	17274000	34394000	22963000	5211200	17752000	0	0	0	0	0	0	28704000	12063000	16641000	35911	4857	33975	221104;221105;221106	298297;298298;298299;298300	298299			4	
MDPNTGR	0	Unmodified	789.34394	0.34393685	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	3	2	2	6.7695	4.4466	2	0.0047315	4207	160511_QHF_FH_JSI12i_1	97.473	28.04			0.79873	0.82932	12.86	7	1	Median	1.0078	0.82932	NaN	1	0	Median	0.8065	0.93504	15.21	3	1	Median	0.73304	0.70407	NaN	1	0	Median	0.7608	0.82285	9.1703	2	0	Median	4484700000	2223300000	2261400000	723530000	325780000	397760000	1388900000	718810000	670050000	1117400000	580490000	536920000	1254900000	598200000	656660000	35912	4308	33976	221107;221108;221109;221110;221111;221112;221113;221114	298301;298302;298303;298304;298305;298306;298307;298308;298309;298310;298311	298304			11	
MDPNTIIEALR	0	Acetyl (Protein N-term)	1313.6649	0.66493664	686	O95373	IPO7	Importin-7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.07	101.97	2	2.1947E-07	90095	160511_QHF_FH_JSI9i_1	119.68	103.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35913	686	33977	221115;221116;221117;221118	298312;298313;298314;298315	298315			4	
MDPSLLR	0	Acetyl (Protein N-term)	872.44259	0.44258826	1315	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				65.329	64.298	1	0.018622	57109	160511_QHF_FH_JSI9i_1	40.921	31.171			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35914	1315	33978	221119	298316	298316			1	
MDPTDAK	1	Unmodified	776.33745	0.33745449	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	11.415	8.0834	2	0.0062314	7641	160511_QHF_FH_JSI11i_1	91.906	58.168			0.87241	0.96328	15.444	7	0	Median	1.3055	1.072	NaN	1	0	Median	0.84259	0.99227	4.1934	2	0	Median	1.1535	1.1278	24.61	2	0	Median	0.81483	0.86599	7.407	2	0	Median	3058900000	1507100000	1551800000	816500000	398050000	418450000	885770000	478750000	407010000	726060000	318110000	407950000	630540000	312150000	318380000	35915	2738	33979	221120;221121;221122;221123;221124;221125;221126	298317;298318;298319;298320;298321;298322;298323;298324	298317			8	
MDPVAYR	0	Unmodified	850.40072	0.40072345	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	4.18	4	3					1			2	1	3	2	27.223	25.45	2	0.013061	21314	160511_QHF_FH_JSI11i_2	68.398	57.582			1.0315	1.0553	15.48	8	0	Median	1.4788	1.235	22.235	2	0	Median	0.9109	1.0554	NaN	1	0	Median	1.1098	1.0969	8.9178	3	0	Median	0.84238	0.89822	2.3438	2	0	Median	685660000	343830000	341830000	139770000	63273000	76499000	100960000	57773000	43188000	271170000	129210000	141950000	173760000	93570000	80193000	35916	1609	33980	221127;221128;221129;221130;221131;221132;221133;221134	298325;298326;298327	298327			3	
MDPVVLSYMDSLLR	0	Acetyl (Protein N-term)	1679.8263	0.82626466	4166	Q96LD8	SENP8	Sentrin-specific protease 8	yes	yes	0	1	0	0		By MS/MS		By MS/MS	1	0	2										1		1	103.99	103.91	2	0.00017844	94699	160511_QHF_FH_JSI10i_1	111.52	93.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35917	4166	33981	221135;221136	298328;298329	298329			2	
MDQADAQFHFVLNQSPNNIPALLGK	1	Unmodified	2767.3752	0.37518398	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.62	100.45	3	4.8313E-10	86340	160511_QHF_FH_JSI12i_2	101.45	95.014			1.0573	1.1215	30.134	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90467	0.90631	NaN	1	0	Median	1.2356	1.3879	NaN	1	1	Median	75186000	35149000	40038000	0	0	0	0	0	0	40778000	23588000	17190000	34409000	11561000	22848000	35918	3115	33982	221137;221138	298330;298331	298330			2	
MDQDSLSSSLK	1	Unmodified	1209.5547	0.55471749	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.621	36.71	2	8.8832E-05	32886	160511_QHF_FH_JSI10i_1	94.363	42.108			1.821	1.6795	3.4347	2	1	Median	2.1068	1.7208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.574	1.6392	NaN	1	0	Median	193340000	69899000	123450000	73715000	26592000	47123000	0	0	0	0	0	0	119630000	43306000	76323000	35919	1469	33983	221139;221140;221141;221142	298332;298333;298334;298335;298336	298335			5	
MDQLLLEK	1	Unmodified	988.52632	0.52631789	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	48.995	48.454	2	0.010583	43768	160511_QHF_FH_JSI11i_1	63.534	34.616			0.72456	0.72599	31.78	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61153	0.57988	NaN	1	1	Median	0.85849	0.90892	NaN	1	1	Median	89784000	51512000	38273000	0	0	0	0	0	0	49121000	28081000	21040000	40663000	23430000	17233000	35920	2574	33984	221143;221144	298337;298338	298337			2	
MDQPPQAK	1	Unmodified	913.43275	0.43275186	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.306	9.925	2	0.0010531	7424	160511_QHF_FH_JSI9i_1	94.662	66.15			1.0873	1.0628	14.135	4	0	Median	1.3234	1.0872	NaN	1	0	Median	0.73059	0.83976	NaN	1	0	Median	1.2012	1.1657	NaN	1	0	Median	0.98412	1.039	NaN	1	0	Median	1291200000	687040000	604190000	315140000	137360000	177780000	318510000	182840000	135670000	362190000	204650000	157540000	295390000	162190000	133200000	35921	1417	33985	221145;221146;221147;221148	298339;298340;298341;298342;298343;298344;298345	298345			7	
MDQVMQFVEPSR	0	Acetyl (Protein N-term)	1507.6799	0.67993477	1907	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.27	101.16	2	2.6685E-08	91681	160511_QHF_FH_JSI12i_1	221.32	202.07			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35922	1907	33986	221149;221150;221151;221152	298346;298347;298348;298349	298347			4	
MDQVMQFVEPSR	0	Acetyl (Protein N-term);2 Oxidation (M)	1539.6698	0.66976402	1907	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	0	1	2	0				By MS/MS	11.7	0.471				1	2								3	66.114	56.653	2	0.0010964	25077	160513_QHF_FH_JSI12Kac_2	62.408	51.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35923	1907	33986	221153;221154;221155	298350;298351;298352	298351		1565;1566	3	
MDQVNWQQER	0	Unmodified	1332.5881	0.5880833	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.909	32.67	2	0.0025246	29288	160511_QHF_FH_JSI11i_1	73.067	62.835			0.29615	0.28927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29615	0.28927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28307000	24069000	4238000	0	0	0	0	0	0	28307000	24069000	4238000	0	0	0	35924	5610	33987	221156	298353	298353			1	
MDQYFNQMEK	1	Unmodified	1332.5479	0.54785797	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	42.616	41.863	2	4.2896E-05	37616	160511_QHF_FH_JSI10i_1	94.309	90.664			0.5952	0.72371	25.706	3	2	Plateau	1.3782	1.1217	NaN	1	1	Median	0.59069	0.70025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0175	1.0591	NaN	1	1	Median	1431300000	792610000	638670000	386610000	192330000	194280000	479210000	311860000	167350000	0	0	0	565460000	288430000	277030000	35925	334;2217	33988	221157;221158;221159	298354;298355;298356;298357;298358	298356			5	
MDQYFNQMEK	1	Oxidation (M)	1348.5428	0.54277259	2217;334	O43432;Q04637	EIF4G3;EIF4G1	Eukaryotic translation initiation factor 4 gamma 3;Eukaryotic translation initiation factor 4 gamma 1	no	no	0	0	1	0	By MS/MS				1	0	1									1				43.193	41.976	2	0.040022	37236	160511_QHF_FH_JSI9i_1	40.533	37.951			0.41701	0.34292	NaN	1	0	Median	0.41701	0.34292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33882000	24375000	9506900	33882000	24375000	9506900	0	0	0	0	0	0	0	0	0	35926	334;2217	33988	221160	298359	298359			1	
MDSAGQDINLNSPNK	1	Acetyl (Protein N-term)	1644.7413	0.74134906	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		3	4	4			1						2	2	1		54.954	54.295	2	1.5899E-100	48272	160511_QHF_FH_JSI9i_1	234.61	227.95			0.86891	1.0545	165.27	3	1	Plateau	22.089	17.991	NaN	1	1	Median	0.86891	1.0545	NaN	1	0	Median	1.0341	1.0022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	573300000	215960000	357340000	133650000	3418200	130230000	273780000	145090000	128690000	165880000	67457000	98419000	0	0	0	35927	329	33989	221161;221162;221163;221164;221165	298360;298361;298362;298363;298364;298365;298366;298367	298366			8	
MDSAGQDINLNSPNK	1	Acetyl (Protein N-term);Oxidation (M)	1660.7363	0.73626368	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	1	1	0		By MS/MS		By MS/MS	11	0				3							1		2	48.496	39.348	2	1.5792E-05	16354	160513_QHF_FH_JSI12Kacf_1	68.069	68.069			1.1434	1.2002	5.6282	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1434	1.2002	5.6282	2	0	Median	3334700	1319600	2015100	0	0	0	0	0	0	0	0	0	3334700	1319600	2015100	35928	329	33989	221166;221167;221168	298368;298369;298370	298369		129	3	
MDSFDEDLARPSGLLAQER	0	Unmodified	2149.011	0.010981977	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							2	1	4	2	72.719	72.165	2;3	1.0492E-09	63196	160511_QHF_FH_JSI11i_2	121.44	112.39			0.97353	0.9401	11.033	9	4	Median	1.0466	0.91973	3.0975	2	2	Median	0.83931	1.0264	NaN	1	0	Median	0.89988	0.88331	13.681	4	2	Median	0.98201	1.024	6.2432	2	0	Median	1211800000	614150000	597610000	255370000	124590000	130780000	269110000	143940000	125170000	432310000	229360000	202950000	254970000	116250000	138710000	35929	5542	33990	221169;221170;221171;221172;221173;221174;221175;221176;221177	298371;298372;298373;298374;298375;298376;298377;298378;298379;298380;298381;298382;298383;298384	298380			14	
MDSLLIAGQINTYCQNIK	1	Unmodified	2081.0285	0.028546297	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	84.699	84.105	2	3.6114E-13	73968	160511_QHF_FH_JSI11i_2	183.79	163.2			0.78468	0.76746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78468	0.76746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10779000	8947600	1831800	0	0	0	0	0	0	10779000	8947600	1831800	0	0	0	35930	283	33991	221178;221179;221180	298385;298386;298387;298388	298386			4	
MDSQGRK	1	Acetyl (Protein N-term)	862.3967	0.3967007	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	1	0	1	By MS/MS			By MS/MS	1	0	2									1			1	5.8154	5.3392	2	0.0025876	3433	160511_QHF_FH_JSI12i_1	86.866	75.355			0.34597	0.32398	187.26	2	1	Median	1.4564	1.2178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.082183	0.086191	NaN	1	1	Median	641710000	426920000	214790000	339020000	134550000	204470000	0	0	0	0	0	0	302690000	292370000	10318000	35931	1940	33992	221181;221182	298389;298390	298389			2	
MDSTANEVEAVK	1	Oxidation (M)	1308.5867	0.5867459	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.49	10				4	2				4	3	4	5	26.446	22.783	2	8.9489E-16	23907	160511_QHF_FH_JSI9i_1	161.51	142.16			1.0363	1.0363	71.744	14	2	Median	1.5046	1.2425	135.01	3	1	Plateau	0.90369	1.0456	28.475	3	0	Median	0.84079	0.83222	63.438	3	0	Plateau	1.0246	1.0554	29.625	5	1	Median	2123800000	960180000	1163700000	684740000	297450000	387290000	177680000	99244000	78435000	612830000	287970000	324860000	648600000	275520000	373080000	35932	867	33993	221183;221184;221185;221186;221187;221188;221189;221190;221191;221192;221193;221194;221195;221196;221197;221198	298391;298392;298393;298394;298395;298396;298397;298398;298399;298400;298401;298402;298403;298404;298405;298406;298407;298408;298409;298410;298411	298405		409	21	
MDSTANEVEAVK	1	Unmodified	1292.5918	0.59183127	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.01	4	4	3		2	3				4	5	5	2	30.065	25.132	2	9.0639E-43	24380	160511_QHF_FH_JSI12i_1	210.87	181.39			0.98482	0.99974	18.247	12	2	Median	1.047	0.86346	7.1	3	1	Median	0.94356	1.1208	21.301	5	1	Median	0.98917	0.96602	10.009	3	0	Plateau	0.85397	0.9041	NaN	1	0	Median	12526000000	5818900000	6707400000	3217200000	1313600000	1903600000	3377200000	1897300000	1479900000	3161500000	1339400000	1822100000	2770300000	1268600000	1501800000	35933	867	33993	221199;221200;221201;221202;221203;221204;221205;221206;221207;221208;221209;221210;221211;221212;221213;221214	298412;298413;298414;298415;298416;298417;298418;298419;298420;298421;298422;298423;298424;298425;298426;298427;298428;298429;298430;298431;298432;298433;298434;298435;298436;298437;298438	298419			27	
MDSTANEVEAVKVHSFPTLK	2	Acetyl (K);Oxidation (M)	2260.1045	0.10454801	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		79.651	69.064	3	0.0026946	36664	160513_QHF_FH_JSI11Kac_5	51.566	43.669			0.19308	0.18933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19308	0.18933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10720000	8799200	1920900	0	0	0	0	0	0	10720000	8799200	1920900	0	0	0	35934	867	33994	221215	298439	298439	571;572	409	1	
MDSTEPPYSQK	1	Oxidation (M)	1297.5496	0.54963211	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.78	8				3	4				2	4	5	4	18.79	15.161	2	1.2289E-13	11516	160511_QHF_FH_JSI9i_1	154.01	150.44			0.94591	0.98764	48.29	15	1	Median	1.2642	1.0479	8.5555	2	0	Median	0.85887	1.0093	62.729	4	0	Median	1.0124	0.9855	53.527	5	1	Median	0.901	0.93989	52.262	4	0	Median	901860000	389240000	512620000	288890000	129190000	159690000	182650000	75110000	107540000	176270000	72261000	104010000	254050000	112680000	141370000	35935	2072	33995	221216;221217;221218;221219;221220;221221;221222;221223;221224;221225;221226;221227;221228;221229;221230	298440;298441;298442;298443;298444;298445;298446;298447;298448;298449;298450;298451;298452;298453;298454;298455;298456;298457;298458;298459;298460;298461;298462;298463	298459		1734	24	
MDSTEPPYSQK	1	Unmodified	1281.5547	0.55471749	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.24	4		2		3	1				2	3	3	2	24.364	20.35	2	4.3487E-23	17717	160511_QHF_FH_JSI10i_1	173.32	166.1			1.1262	1.1063	10.423	8	2	Median	1.183	0.99385	NaN	1	0	Median	0.96189	1.1368	11.112	2	0	Median	1.1045	1.0757	8.2744	3	1	Median	1.176	1.2533	1.8415	2	1	Median	7451700000	3733300000	3718300000	1791900000	752980000	1038900000	1784700000	953710000	830980000	1934800000	1030900000	903850000	1940300000	995690000	944610000	35936	2072	33995	221231;221232;221233;221234;221235;221236;221237;221238;221239;221240	298464;298465;298466;298467;298468;298469;298470;298471;298472;298473;298474;298475;298476;298477;298478;298479;298480;298481;298482;298483	298475			20	
MDSTEPPYSQKR	1	Oxidation (M)	1453.6507	0.65074314	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.69	10	15	8			1	4	2		8	8	10	14	13.174	11.367	2;3	4.2842E-14	8356	160511_QHF_FH_JSI12i_1	158.79	148.27			0.83346	0.85612	41.765	39	1	Median	1.0331	0.87711	85.516	8	1	Median	0.6917	0.83284	13.428	7	0	Median	0.86665	0.8533	9.1071	10	0	Median	0.8166	0.88923	21.943	14	0	Median	11289000000	5847500000	5441900000	1797200000	895120000	902090000	1941500000	1041300000	900210000	3955900000	2088800000	1867200000	3594700000	1822300000	1772400000	35937	2072	33996	221241;221242;221243;221244;221245;221246;221247;221248;221249;221250;221251;221252;221253;221254;221255;221256;221257;221258;221259;221260;221261;221262;221263;221264;221265;221266;221267;221268;221269;221270;221271;221272;221273;221274;221275;221276;221277;221278;221279;221280	298484;298485;298486;298487;298488;298489;298490;298491;298492;298493;298494;298495;298496;298497;298498;298499;298500;298501;298502;298503;298504;298505;298506;298507;298508;298509;298510;298511;298512;298513;298514;298515;298516;298517	298491		1734	33	
MDSTEPPYSQKR	1	Unmodified	1437.6558	0.65582851	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.35	8	8	8			1	6	8	3	9	10	12	11	18.558	14.669	2;3	4.1222E-42	12718	160511_QHF_FH_JSI10i_2	208.6	193.94			0.81489	0.12385	100.71	41	7	Linear	1.0659	0.90672	91.484	9	1	Median	0.72062	0.86552	114.37	9	2	Median	0.80139	0.78953	104.3	12	2	Median	0.79981	0.87362	104.76	11	2	Median	43699000000	31859000000	11840000000	6796000000	4334800000	2461200000	8936200000	7337500000	1598600000	14364000000	10230000000	4134100000	13603000000	9956500000	3646200000	35938	2072	33996	221281;221282;221283;221284;221285;221286;221287;221288;221289;221290;221291;221292;221293;221294;221295;221296;221297;221298;221299;221300;221301;221302;221303;221304;221305;221306;221307;221308;221309;221310;221311;221312;221313;221314;221315;221316;221317;221318;221319;221320;221321;221322	298518;298519;298520;298521;298522;298523;298524;298525;298526;298527;298528;298529;298530;298531;298532;298533;298534;298535;298536;298537;298538;298539;298540;298541;298542;298543;298544;298545;298546;298547;298548;298549;298550;298551;298552;298553;298554;298555;298556;298557;298558;298559;298560;298561;298562;298563;298564;298565;298566;298567;298568;298569	298561			52	
MDSTEPPYSQKR	1	Acetyl (K);Oxidation (M)	1495.6613	0.66130782	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	1	1			By MS/MS		13	0						1						1		28.842	20.961	2	0.044045	12685	160513_QHF_FH_JSI11Kac_3	50.284	42.903			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35939	2072	33996	221323	298570	298570	2152	1734	1	
MDSTEPPYSQKR	1	Acetyl (K)	1479.6664	0.6663932	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	35.321	26.816	2	0.0025854	15483	160513_QHF_FH_JSI12Kac_3	87.913	80.533			0.68602	0.74733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68602	0.74733	NaN	1	0	Median	3488000	2278700	1209200	0	0	0	0	0	0	0	0	0	3488000	2278700	1209200	35940	2072	33996	221324;221325	298571;298572	298571	2152		2	
MDSTEPPYSQKRYEEIVK	2	Oxidation (M)	2215.0467	0.046698781	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	38.288	37.853	3;4	8.4205E-06	33099	160511_QHF_FH_JSI11i_3	86.378	78.19			1.1506	1.2672	76.735	5	1	Median	1.663	1.4134	NaN	1	0	Median	1.1506	1.4254	NaN	1	0	Median	0.57666	0.54519	119.28	2	1	Median	1.0342	1.018	NaN	1	0	Median	1242400000	573980000	668460000	51865000	21918000	29947000	111880000	56076000	55809000	731300000	352740000	378560000	347390000	143240000	204140000	35941	2072	33997	221326;221327;221328;221329;221330	298573;298574;298575;298576	298573		1734	4	
MDSTEPPYSQKRYEEIVK	2	Unmodified	2199.0518	0.051784159	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32		9	8						8	5	6	7	7	45.093	41.607	2;3;4	3.05E-31	36147	160511_QHF_FH_JSI11i_2	144.97	139.43			1.0683	1.1296	44.558	25	1	Median	1.3898	1.1533	10.141	5	0	Median	1.0648	1.2445	10.794	6	0	Median	1.1427	1.1296	81.502	7	1	Median	0.84695	0.90613	10.046	7	0	Median	16729000000	8269300000	8459400000	2178400000	949560000	1228800000	5076200000	2306700000	2769400000	5536100000	3196600000	2339500000	3938200000	1816400000	2121700000	35942	2072	33997	221331;221332;221333;221334;221335;221336;221337;221338;221339;221340;221341;221342;221343;221344;221345;221346;221347;221348;221349;221350;221351;221352;221353;221354;221355	298577;298578;298579;298580;298581;298582;298583;298584;298585;298586;298587;298588;298589;298590;298591;298592;298593;298594;298595;298596;298597;298598;298599;298600;298601;298602;298603;298604;298605;298606;298607;298608;298609;298610;298611;298612	298598			35	
MDSTEPPYSQKRYEEIVKEVSTYIK	3	Acetyl (K)	3061.4954	0.49541828	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	3			By MS/MS	By MS/MS	16	0									2			1	1	88.119	78.733	4	1.9443E-18	42247	160513_QHF_FH_JSI12Kac_6	105.73	92.947			0.76676	0.75845	48.16	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57905	0.53955	NaN	1	0	Median	1.0153	1.0662	NaN	1	0	Median	113870000	62626000	51248000	0	0	0	0	0	0	62337000	38874000	23462000	51536000	23751000	27785000	35943	2072	33998	221356;221357	298613;298614	298614	2147;2152;2153		2	
MDSTLTASEIR	0	Acetyl (Protein N-term);Oxidation (M)	1280.5918	0.59183127	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	5.15	3			2	3					1	2	3	2	49.191	43.109	2	2.4761E-06	39387	160511_QHF_FH_JSI11i_1	112.71	96.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35944	1664	33999	221358;221359;221360;221361;221362;221363;221364;221365	298615;298616;298617;298618;298619;298620;298621;298622	298615		1348	8	
MDSTLTASEIR	0	Acetyl (Protein N-term)	1264.5969	0.59691665	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.26	4			2	2					1	3	3	1	65.699	60.648	2	5.6616E-06	54025	160511_QHF_FH_JSI9i_1	173.37	156.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35945	1664	33999	221366;221367;221368;221369;221370;221371;221372;221373	298623;298624;298625;298626;298627;298628;298629;298630	298628			8	
MDSTNADALYVR	0	Unmodified	1354.6187	0.61871473	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.359	40.706	2	1.1406E-10	36436	160511_QHF_FH_JSI10i_1	143.73	106.18			1.0848	1.0327	17.848	3	0	Median	1.603	1.2944	NaN	1	0	Median	0.75416	0.91003	NaN	1	0	Median	1.0848	1.0327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	840770000	391500000	449270000	233890000	105130000	128760000	290030000	146830000	143200000	316850000	139530000	177310000	0	0	0	35946	4294	34000	221374;221375;221376	298631;298632;298633;298634;298635	298632			5	
MDTDLETMDLDQGGEALAPR	0	Unmodified	2176.9616	0.96164852	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	77.124	76.704	2;3	2.3566E-138	68218	160511_QHF_FH_JSI9i_1	283.54	261.31			1.0269	1.0649	4.1013	7	0	Median	1.3413	1.1144	NaN	1	0	Median	0.89215	1.0387	3.5278	2	0	Median	1.1061	1.0795	6.8491	2	0	Median	1.0123	1.0785	2.2099	2	0	Median	444690000	222300000	222390000	36223000	17093000	19130000	156230000	90821000	65407000	142060000	62241000	79820000	110180000	52142000	58035000	35947	552	34001	221377;221378;221379;221380;221381;221382;221383	298636;298637;298638;298639;298640;298641;298642;298643;298644;298645;298646;298647;298648	298648			12	
MDTDVVK	1	Unmodified	806.3844	0.38440468	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				20.624	19.465	2	0.048713	16349	160511_QHF_FH_JSI9i_1	43.124	26.197			1.4123	1.1478	NaN	1	0	Median	1.4123	1.1478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55475000	23967000	31509000	55475000	23967000	31509000	0	0	0	0	0	0	0	0	0	35948	1989	34002	221384	298649	298649			1	
MDTEEARPAK	1	Unmodified	1146.5339	0.53392246	4968	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		8.9063	8.5236	3	0.0019415	6161	160511_QHF_FH_JSI11i_2	55.046	36.266			1.0734	1.0255	5.8607	3	0	Median	1.1137	0.96122	NaN	1	0	Median	0.86519	1.0255	NaN	1	0	Median	1.0734	1.0805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	217430000	92451000	124980000	58799000	28106000	30694000	49892000	22843000	27049000	108740000	41503000	67240000	0	0	0	35949	4968	34003	221385;221386;221387	298650;298651;298652;298653;298654;298655	298652			6	
MDTELAESGSNFSVGQR	0	Unmodified	1826.8105	0.81049126	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			53.541	53.137	2	2.4206E-10	47910	160511_QHF_FH_JSI10i_1	143.98	137.74			0.82457	0.97624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82457	0.97624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37530000	19893000	17637000	0	0	0	37530000	19893000	17637000	0	0	0	0	0	0	35950	292	34004	221388	298656	298656			1	
MDTESTYSGYSYYSSHSK	1	Acetyl (Protein N-term)	2133.8473	0.84733027	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	53.232	52.617	2	4.863E-24	47721	160511_QHF_FH_JSI12i_1	136.99	131.6			1.0905	0.97776	6.4237	2	0	Median	1.2124	1.0232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98097	0.93434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132190000	70922000	61272000	36616000	16044000	20572000	55980000	32191000	23789000	30399000	13487000	16911000	9200200	9200200	0	35951	3679	34005	221389;221390;221391;221392;221393;221394	298657;298658;298659;298660;298661;298662;298663;298664	298660			8	
MDTIDQDDELIR	0	Unmodified	1462.661	0.66097347	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	54.277	53.614	2	2.5023E-07	47574	160511_QHF_FH_JSI9i_1	130.63	127.78			0.97603	1.0228	18.986	5	2	Median	1.4594	1.1838	NaN	1	0	Median	0.88497	1.0228	NaN	1	0	Median	0.97603	0.95222	NaN	1	0	Median	0.93728	0.97643	33.685	2	2	Median	497010000	237260000	259760000	82548000	30258000	52291000	98595000	60500000	38095000	109740000	51993000	57745000	206130000	94506000	111630000	35952	3921	34006	221395;221396;221397;221398;221399	298665;298666;298667;298668;298669;298670;298671;298672	298671			8	
MDTIQEDPSTDSHMDEDGFEK	1	Unmodified	2425.9526	0.95259998	2095	P78536	ADAM17	Disintegrin and metalloproteinase domain-containing protein 17	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	48.848	48.433	3	1.7745E-05	43846	160511_QHF_FH_JSI11i_1	68.458	65.576			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13638000	0	13638000	0	0	0	0	0	0	13638000	0	13638000	0	0	0	35953	2095	34007	221400;221401	298673;298674	298673			2	
MDTLPIQK	1	Unmodified	944.5001	0.50010314	4039	Q96E52	OMA1	Metalloendopeptidase OMA1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.803	40.183	2	0.014526	36518	160511_QHF_FH_JSI12i_1	60.682	30.07			0.49085	0.50298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49085	0.50298	NaN	1	1	Median	54615000	33453000	21162000	0	0	0	0	0	0	0	0	0	54615000	33453000	21162000	35954	4039	34008	221402	298675	298675			1	
MDTMMLNVR	0	Acetyl (Protein N-term)	1151.5137	0.51372107	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			80.812	80.306	2	0.0010344	72812	160511_QHF_FH_JSI10i_1	69.905	67.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35955	4634	34009	221403;221404	298676;298677	298676			2	
MDTPLRR	0	Acetyl (Protein N-term)	929.47529	0.47528537	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	1	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	29.842	28.749	2	0.0154	24279	160511_QHF_FH_JSI12i_2	47.916	30.551			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35956	4744	34010	221405;221406;221407	298678;298679;298680	298678			3	
MDVFLMIR	0	Acetyl (Protein N-term)	1065.5351	0.53510844	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	6.48	4	5	1						4	4	3	4	3	101.7	99.039	1;2	4.1052E-10	51087	160513_QHF_FH_JSI11Kac_6	158.08	135.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35957	2659	34011	221408;221409;221410;221411;221412;221413;221414;221415;221416;221417;221418;221419;221420;221421	298681;298682;298683;298684;298685;298686;298687;298688;298689;298690;298691;298692;298693;298694	298684			14	
MDVFLMIR	0	Acetyl (Protein N-term);2 Oxidation (M)	1097.5249	0.52493768	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	1	2	0		By MS/MS	By MS/MS		13.7	0.943						2		1			1	2		83.915	74.818	2	0.0046802	35986	160513_QHF_FH_JSI11Kac_3	56.011	51.416			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35958	2659	34011	221422;221423;221424	298695;298696;298697	298695		2086;2087	3	
MDVGELLSYQPNR	0	Acetyl (Protein N-term)	1562.7399	0.73989249	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			99.399	99.274	2	0.00022492	89909	160511_QHF_FH_JSI10i_1	79.693	70.435			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35959	3817	34012	221425;221426	298698;298699	298698			2	
MDVLAEANGTFALNLLK	1	Acetyl (Protein N-term)	1860.9655	0.96553533	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1.33	0.471	2	1								1	2			103.44	103.35	2	5.061E-105	91902	160511_QHF_FH_JSI10i_2	234.17	209.83			0.90831	0.88115	8.3126	2	0	Median	1.1522	0.9345	NaN	1	0	Median	0.71604	0.83085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233140000	125640000	107500000	82602000	36343000	46259000	150530000	89296000	61239000	0	0	0	0	0	0	35960	1425	34013	221427;221428;221429	298700;298701;298702;298703	298703			4	
MDVLVSECSAR	0	Acetyl (Protein N-term)	1307.585	0.58497176	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.388	70.921	2	2.4134E-05	64612	160511_QHF_FH_JSI12i_1	99.973	81.193			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35961	1818	34014	221430;221431;221432;221433	298704;298705;298706;298707	298705			4	
MDVNIAPLR	0	Acetyl (Protein N-term)	1069.559	0.559015	583	O75915	ARL6IP5	PRA1 family protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.662	78.188	1;2	8.6474E-05	71061	160511_QHF_FH_JSI11i_1	93.429	85.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35962	583	34015	221434;221435;221436;221437	298708;298709;298710;298711	298708			4	
MDVNVGDIDIEGPEGK	1	Unmodified	1686.7771	0.77706586	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	74.699	74.296	2	2.1545E-07	67513	160511_QHF_FH_JSI12i_1	161.76	149.89			1.1948	1.2638	8.3418	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0023	1.1588	NaN	1	0	Median	1.3441	1.3406	NaN	1	0	Median	1.1948	1.277	9.8295	2	2	Median	493950000	220830000	273120000	0	0	0	164050000	84799000	79252000	132070000	59115000	72957000	197820000	76912000	120910000	35963	2286	34016	221438;221439;221440;221441	298712;298713;298714;298715;298716;298717;298718;298719;298720	298715			9	
MDYEDDRLR	0	Unmodified	1211.5241	0.52408606	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	24.531	23.658	2;3	4.1283E-07	19740	160511_QHF_FH_JSI11i_2	141.93	136.01			0.81981	0.83047	13.629	8	0	Median	0.96619	0.82447	16.391	2	0	Median	0.57305	0.70055	6.1161	2	0	Median	0.81981	0.83047	2.87	2	0	Median	0.83021	0.93091	12.855	2	0	Median	908550000	486160000	422380000	134600000	64370000	70229000	176140000	110010000	66126000	419340000	213130000	206210000	178470000	98649000	79819000	35964	1556	34017	221442;221443;221444;221445;221446;221447;221448;221449	298721;298722;298723;298724;298725;298726;298727;298728;298729;298730;298731	298728			11	
MDYYNALNLYMHQVLIR	0	Unmodified	2156.0547	0.054701467	631	O94952	FBXO21	F-box only protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	92.777	84.426	3	1.6053E-44	45350	160513_QHF_FH_JSI12Kac_6	187.89	171.58			0.95089	1.1134	16.715	4	1	Linear	1.5448	1.3212	NaN	1	1	Median	0.9871	1.1361	NaN	1	0	Median	0.94277	0.8812	NaN	1	0	Median	1.0245	1.0912	NaN	1	0	Median	696670000	336680000	359990000	154240000	52863000	101380000	183750000	93203000	90545000	188800000	112700000	76098000	169880000	77911000	91971000	35965	631	34018	221450;221451;221452;221453	298732;298733;298734	298733			3	
MEAAAEPGNLAGVR	0	Acetyl (Protein N-term)	1426.6875	0.68746299	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	4.33	4.71	2			1							1	1	1	63.374	62.831	2	8.6466E-05	57118	160511_QHF_FH_JSI11i_1	102.52	86.862			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35966	5689	34019	221454;221455;221456	298735;298736;298737	298735			3	
MEAAAEPGNLAGVR	0	Acetyl (Protein N-term);Oxidation (M)	1442.6824	0.68237762	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	56.695	47.296	2	0.00049581	18751	160513_QHF_FH_JSI11Kac_1	73.067	60.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35967	5689	34019	221457;221458;221459	298738;298739;298740	298739		2732	3	
MEAAGSPAATETGK	1	Acetyl (Protein N-term)	1361.6133	0.613295	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.914	33.62	2	2.1248E-05	30048	160511_QHF_FH_JSI10i_1	84.479	73.315			0.45378	0.48964	95.955	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82021	0.96504	NaN	1	0	Median	0.25105	0.24843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85439000	55717000	29723000	0	0	0	58416000	32658000	25758000	27024000	23059000	3964500	0	0	0	35968	4378	34020	221460;221461	298741;298742;298743	298743			3	
MEADKDDTQQILK	2	Acetyl (Protein N-term)	1575.745	0.74503745	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	1	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	48.283	47.512	2	3.2527E-07	42788	160511_QHF_FH_JSI10i_1	56.359	21.472			1.0623	1.0845	76.061	3	1	Plateau	0.30646	0.25513	NaN	1	1	Median	0.67901	0.7896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0623	1.0845	NaN	1	0	Median	157010000	91365000	65640000	22819000	18824000	3995100	48620000	27188000	21432000	0	0	0	85566000	45353000	40214000	35969	2383	34021	221462;221463;221464	298744;298745;298746;298747	298746			4	
MEADPDGQQPEK	1	Unmodified	1343.5663	0.5663448	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	14.341	13.717	2	6.3833E-06	11427	160511_QHF_FH_JSI12i_1	121.9	117.88			1.0974	1.0309	28.187	4	3	Median	1.4408	1.1813	24.721	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72139	0.70947	NaN	1	1	Median	1.0013	1.0715	NaN	1	0	Median	383300000	192040000	191260000	159480000	62081000	97397000	0	0	0	116930000	73245000	43688000	106890000	56714000	50179000	35970	3907	34022	221465;221466;221467;221468	298748;298749;298750;298751	298749			4	
MEADPELSK	1	Unmodified	1018.4641	0.46411156	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	25.983	22.798	2	0.0002709	20165	160511_QHF_FH_JSI12i_1	96.331	70.594			1.6054	1.6443	56.699	6	4	Median	2.5902	2.1354	NaN	1	1	Median	3.5344	4.1646	NaN	1	1	Median	1.3041	1.2641	44.189	2	1	Median	1.1124	1.1986	37.712	2	1	Median	783400000	316680000	466720000	168940000	40477000	128460000	113450000	30664000	82784000	241500000	123200000	118300000	259510000	122340000	137170000	35971	552	34023	221469;221470;221471;221472;221473;221474;221475	298752;298753;298754;298755;298756;298757	298753			6	
MEAENLEQLIDQK	1	Unmodified	1559.7501	0.75012283	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	76.605	75.886	2	0.00015691	69131	160511_QHF_FH_JSI12i_1	107.17	82.151			1.0029	0.91239	19.056	2	2	Median	0.98518	0.79737	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.021	1.044	NaN	1	1	Median	57420000	21966000	35454000	24498000	10224000	14273000	0	0	0	0	0	0	32923000	11742000	21181000	35972	983	34024	221476;221477	298758;298759;298760	298758			3	
MEAERGPER	0	Acetyl (Protein N-term)	1115.503	0.50295669	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	15.249	14.713	2	0.00058018	12058	160511_QHF_FH_JSI11i_1	75.378	53.915			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35973	2509	34025	221478;221479;221480;221481;221482;221483;221484	298761;298762;298763;298764;298765;298766;298767	298761			7	
MEAFQELR	0	Acetyl (Protein N-term)	1064.4961	0.4960804	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.257	77.802	2	0.00018329	70705	160511_QHF_FH_JSI11i_1	124.08	106.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35974	4143	34026	221485;221486;221487;221488	298768;298769;298770;298771	298768			4	
MEAFQELRK	1	Acetyl (Protein N-term)	1192.591	0.59104341	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	1	0	1				By MS/MS	2	0		1											1	66.086	64.786	2	0.0013235	55691	160511_QHF_FH_JSI12i_2	68.016	41.911			2.3345	2.5255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3345	2.5255	NaN	1	1	Median	22806000	7986500	14819000	0	0	0	0	0	0	0	0	0	22806000	7986500	14819000	35975	4143	34027	221489	298772	298772			1	
MEAFVVYR	0	Unmodified	1013.5004	0.50043749	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.54		4						3	4	3	3	3	2	58.764	52.109	2	4.3652E-07	28567	160513_QHF_FH_JSI10Kac_6	142.64	126.48			1.1097	1.1492	11.608	11	1	Median	1.2374	1.0558	14.286	3	0	Median	0.91612	1.1057	8.8036	3	0	Plateau	1.3083	1.217	6.0901	3	0	Plateau	1.0728	1.1783	3.533	2	1	Median	1314700000	597710000	716950000	270180000	100720000	169460000	352580000	191890000	160690000	321330000	131680000	189650000	370580000	173430000	197150000	35976	2581	34028	221490;221491;221492;221493;221494;221495;221496;221497;221498;221499;221500	298773;298774;298775;298776;298777;298778;298779;298780;298781;298782;298783;298784;298785;298786;298787;298788;298789	298788			17	
MEAFVVYR	0	Oxidation (M)	1029.4954	0.49535211	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	15	0								2		1			1	50.155	39.731	2	0.016587	21432	160513_QHF_FH_JSI9Kac_5	72.138	63.366			1.2699	1.2103	7.4434	2	1	Median	1.4146	1.1483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.14	1.2757	NaN	1	0	Median	9721800	4290500	5431300	5438000	2241700	3196300	0	0	0	0	0	0	4283800	2048800	2235000	35977	2581	34028	221501;221502	298790;298791	298790		2024	2	
MEALILEPSLYTVK	1	Acetyl (Protein N-term)	1647.8793	0.87934609	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	102.73	102.64	2	7.6685E-22	93406	160511_QHF_FH_JSI11i_1	115.18	104.65			1.007	1.0644	5.7975	4	0	Median	1.3738	1.1117	NaN	1	0	Median	0.91843	1.0866	NaN	1	0	Median	1.0853	1.0425	NaN	1	0	Median	0.9343	0.97415	NaN	1	0	Median	2342300000	1144600000	1197600000	399990000	183560000	216430000	773060000	377570000	395490000	596500000	284670000	311830000	572730000	298830000	273900000	35978	1966	34029	221503;221504;221505;221506;221507	298792;298793;298794;298795;298796;298797	298793			6	
MEALIPVINK	1	Acetyl (Protein N-term)	1168.6526	0.65258104	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.67	101.57	2	3.7765E-06	92300	160511_QHF_FH_JSI10i_1	70.919	60.451			1.1341	1.1351	9.3369	4	0	Median	1.2541	1.018	NaN	1	0	Median	1.0355	1.2117	NaN	1	0	Median	1.0989	1.0634	NaN	1	0	Median	1.1704	1.2267	NaN	1	0	Median	2007300000	953630000	1053700000	635970000	285250000	350720000	388440000	197140000	191290000	528030000	250820000	277210000	454860000	220410000	234450000	35979	133	34030	221508;221509;221510;221511	298798;298799;298800;298801;298802;298803;298804	298802			7	
MEANGLGPQGFPELK	1	Acetyl (Protein N-term)	1628.7868	0.78684269	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		88.735	88.308	2	8.3064E-08	80296	160511_QHF_FH_JSI10i_1	133.32	113.02			5.7866	4.9619	155.31	3	3	Plateau	5.8856	4.9619	NaN	1	1	Median	0.38433	0.45464	NaN	1	1	Median	0.27517	0.26948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159420000	81749000	77673000	64509000	7209100	57300000	52849000	38728000	14121000	42064000	35812000	6251500	0	0	0	35980	843	34031	221512;221513;221514	298805;298806;298807	298806			3	
MEANGSQGTSGSANDSQHDPGK	1	Acetyl (Protein N-term)	2215.9036	0.90361637	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	1	3	16.176	15.861	2;3	9.9096E-13	13413	160511_QHF_FH_JSI10i_1	104.41	98.921			0.97319	1.1035	25.413	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1171	1.3145	NaN	1	0	Median	1.5829	1.5184	NaN	1	0	Median	0.90852	0.92635	NaN	1	0	Median	152150000	66574000	85571000	0	0	0	52444000	21927000	30517000	31349000	15403000	15945000	68353000	29243000	39109000	35981	4028	34032	221515;221516;221517;221518;221519;221520;221521;221522	298808;298809;298810;298811;298812;298813;298814;298815;298816	298815			9	
MEAPGLAQAAAAESDSRK	1	Acetyl (Protein N-term)	1843.8734	0.87342586	1756	P51817	PRKX	cAMP-dependent protein kinase catalytic subunit PRKX	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		60.663	60.23	2	0.00035203	54668	160511_QHF_FH_JSI11i_1	59.185	42.931			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35982	1756	34033	221523	298817	298817			1	
MEASSEPPLDAK	1	Acetyl (Protein N-term)	1315.5966	0.5965823	3268	Q7Z4G1	COMMD6	COMM domain-containing protein 6	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		50.025	49.61	2	0.034988	44950	160511_QHF_FH_JSI11i_1	33.875	25.343			0.18791	0.17999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18791	0.17999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11176000	9559100	1617000	0	0	0	0	0	0	11176000	9559100	1617000	0	0	0	35983	3268	34034	221524	298818	298818			1	
MEATGVLPFVR	0	Acetyl (Protein N-term)	1260.6536	0.65364367	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.43	100.31	2	2.423E-05	88639	160511_QHF_FH_JSI9i_1	137.14	126.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35984	2344	34035	221525;221526;221527;221528	298819;298820;298821;298822	298822			4	
MEATLEQHLEDTMK	1	Acetyl (Protein N-term)	1716.7699	0.76987199	341	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	85.844	85.275	2	1.8051E-40	77777	160511_QHF_FH_JSI12i_1	129.84	117.26			1.163	1.1512	174.25	8	3	Median	5.3482	4.5186	210.69	2	1	Median	0.91769	1.1102	3.8389	2	0	Median	6.069	6.0816	253.91	2	1	Median	6.2105	6.7374	248.59	2	1	Median	2292500000	281650000	2010900000	415970000	48103000	367870000	138660000	74613000	64047000	773400000	83097000	690300000	964500000	75838000	888660000	35985	341	34036	221529;221530;221531;221532;221533;221534;221535;221536	298823;298824;298825;298826;298827;298828;298829;298830;298831;298832	298825			10	
MEATLEQHLEDTMK	1	Acetyl (Protein N-term);Oxidation (M)	1732.7648	0.76478662	341	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	yes	yes	0	1	1	0		By MS/MS			1	0	1										1			69.485	69.227	2	0.017449	62714	160511_QHF_FH_JSI10i_1	34.773	28.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35986	341	34036	221537	298833	298833		131	1	
MEATTAGVGRLEEEALR	0	Acetyl (Protein N-term)	1873.9204	0.92037606	3759	Q8WUD4	CCDC12	Coiled-coil domain-containing protein 12	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	81.482	80.667	2	0.0028616	71167	160511_QHF_FH_JSI9i_2	50.675	26.689			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35987	3759	34037	221538;221539;221540	298834;298835;298836	298835			3	
MEAVLNELVSVEDLLK	1	Acetyl (Protein N-term)	1842.9649	0.96486663	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	1	0	0	By MS/MS		By MS/MS		2	0		2								1		1		105.49	105.42	2	1.3789E-26	93029	160511_QHF_FH_JSI11i_2	220.9	206.45			1.3568	1.1344	NaN	1	0	Median	1.3568	1.1344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24784000	3451100	21333000	8261400	3451100	4810400	0	0	0	16523000	0	16523000	0	0	0	35988	5588	34038	221541;221542	298837;298838	298838			2	
MEAVPDVERK	1	Unmodified	1172.586	0.58595803	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			26.079	25.177	3	0.013479	21917	160511_QHF_FH_JSI10i_2	40.589	26.82			1.0232	1.2641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0232	1.2641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19865000	10989000	8875300	0	0	0	19865000	10989000	8875300	0	0	0	0	0	0	35989	4582	34039	221543	298839	298839			1	
MEAVVNLYQEVMK	1	Acetyl (Protein N-term)	1594.7735	0.77350081	4488	Q9BW60	ELOVL1	Elongation of very long chain fatty acids protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.643	5	5	1							2	3	3	3	102.54	102.45	2	4.2456E-42	94010	160511_QHF_FH_JSI12i_1	137.98	124.21			1.2897	1.1664	106.31	10	5	Median	2.4074	1.9878	72.213	2	1	Median	0.95712	1.1405	60.936	3	1	Median	1.1474	1.1302	152.78	3	2	Median	3.2247	3.3411	163.86	2	1	Median	674380000	297230000	377150000	72466000	25227000	47239000	264410000	124880000	139530000	205690000	92239000	113450000	131820000	54881000	76942000	35990	4488	34040	221544;221545;221546;221547;221548;221549;221550;221551;221552;221553;221554	298840;298841;298842;298843;298844;298845;298846;298847;298848;298849;298850;298851	298842			12	
MEDATANGQEDSK	1	Unmodified	1394.562	0.56198771	4526	Q9BXS9	SLC26A6	Solute carrier family 26 member 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	8.2607	7.9626	2	1.8383E-09	5838	160511_QHF_FH_JSI12i_1	108.7	98.173			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35991	4526	34041	221555;221556	298852;298853	298852			2	
MEDETQK	1	Unmodified	879.3644	0.36439752	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1	0	3									1		1	1	5.0104	4.6714	2	0.04193	2608	160511_QHF_FH_JSI12i_1	46.426	20.203			1.3449	1.4082	21.324	3	0	Median	1.2618	1.046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5884	1.5816	NaN	1	0	Median	1.3449	1.4082	NaN	1	0	Median	371950000	161050000	210900000	76558000	37050000	39507000	0	0	0	132990000	55450000	77535000	162410000	68546000	93859000	35992	1636	34042	221557;221558;221559	298854	298854			1	
MEDEVVR	0	Acetyl (Protein N-term)	918.41168	0.41168206	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		38.296	37.673	1	1.5378E-06	33907	160511_QHF_FH_JSI11i_1	152.63	132.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35993	1220	34043	221560;221561;221562	298855;298856;298857	298855			3	
MEDLDQSPLVSSSDSPPRPQPAFK	1	Acetyl (Protein N-term)	2669.2643	0.26429613	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	2	1	81.961	81.499	2;3	1.3747E-51	73949	160511_QHF_FH_JSI10i_1	148.88	147.72			1.0811	1.1993	10.176	4	0	Median	1.4929	1.2151	NaN	1	0	Median	1.0567	1.2701	NaN	1	0	Median	1.0483	1.0059	NaN	1	0	Median	1.106	1.1837	NaN	1	0	Median	1212100000	529110000	683010000	304870000	108540000	196320000	282600000	133830000	148770000	353140000	161530000	191610000	271500000	125200000	146300000	35994	4919	34044	221563;221564;221565;221566;221567;221568;221569;221570	298858;298859;298860;298861;298862;298863;298864;298865;298866;298867;298868;298869;298870;298871	298864			14	
MEDQFAALHENPDIIIATPGR	0	Unmodified	2337.1423	0.1423305	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	79.527	78.685	3	0.021505	69206	160511_QHF_FH_JSI11i_2	40.88	32.236			0.7378	0.92528	8.853	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71229	0.84094	NaN	1	0	Median	0.92667	0.92528	NaN	1	0	Median	0.7378	0.77529	NaN	1	0	Median	59696000	29052000	30644000	0	0	0	17162000	9490400	7672000	28824000	12470000	16353000	13710000	7091100	6618600	35995	3720	34045	221571;221572;221573	298872	298872			0	
MEDSASASLSSAAATGTSTSTPAAPTAR	0	Acetyl (Protein N-term)	2638.2028	0.20281809	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	63.964	63.311	2;3	1.1495E-41	56161	160511_QHF_FH_JSI9i_1	221.47	216.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35996	596	34046	221574;221575;221576;221577;221578;221579;221580	298873;298874;298875;298876;298877;298878;298879	298879			7	
MEDSMDMDMSPLRPQNYLFGCELK	1	Acetyl (Protein N-term)	2948.2523	0.25229293	857	P06748	NPM1	Nucleophosmin	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	101.63	101.55	2;3	1.266E-51	92092	160511_QHF_FH_JSI12i_1	123.36	121.4			1.2287	1.2678	16.511	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95351	1.1254	NaN	1	0	Median	1.0976	1.0697	NaN	1	0	Median	1.3844	1.4553	2.6583	2	0	Median	1473100000	652170000	820970000	0	0	0	585700000	285790000	299900000	385650000	167430000	218220000	501790000	198950000	302840000	35997	857	34047	221581;221582;221583;221584;221585	298880;298881;298882;298883	298881			4	
MEDTLVNNVPLPNTLPLPK	1	Unmodified	2104.1238	0.12382689	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	100.59	100.45	2;3	2.1143E-18	88694	160511_QHF_FH_JSI9i_1	166.48	140.35			1.1671	1.1366	25.355	5	3	Median	1.0909	0.88886	38.376	2	0	Median	0.75865	0.89482	NaN	1	1	Median	1.1671	1.1366	NaN	1	1	Median	1.2227	1.26	NaN	1	1	Median	218990000	102140000	116850000	56056000	19648000	36408000	56062000	31429000	24632000	52701000	29262000	23439000	54172000	21798000	32374000	35998	5646	34048	221586;221587;221588;221589;221590;221591	298884;298885;298886;298887;298888;298889;298890	298889			7	
MEDTPLVISK	1	Acetyl (Protein N-term)	1173.5951	0.59512574	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	72.864	72.351	2	7.3311E-07	65760	160511_QHF_FH_JSI10i_1	72.643	55.257			1.3428	1.3207	18.587	4	0	Median	1.4657	1.2122	NaN	1	0	Median	1.2302	1.4389	NaN	1	0	Median	1.5053	1.4929	NaN	1	0	Median	0.98042	0.99462	NaN	1	0	Median	441640000	203130000	238500000	99237000	33201000	66036000	92126000	54570000	37557000	134640000	57349000	77290000	115630000	58014000	57620000	35999	4410	34049	221592;221593;221594;221595;221596;221597	298891;298892;298893;298894;298895;298896;298897;298898	298895			8	
MEDTSFPSGGNAIGVNSASSK	1	Unmodified	2054.9215	0.92149827	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	51.645	50.972	2;3	3.1457E-27	46209	160511_QHF_FH_JSI12i_1	197.88	184.68			0.71494	0.96605	30.162	8	2	Plateau	1.1588	0.93864	11.443	2	0	Median	0.83283	0.99273	22.296	2	0	Median	1.0704	1.0242	56.806	2	1	Median	1.1918	1.2278	41.278	2	1	Median	640280000	337740000	302530000	112460000	58903000	53560000	176180000	114070000	62112000	175440000	91317000	84126000	176190000	73453000	102740000	36000	3570	34050	221598;221599;221600;221601;221602;221603;221604;221605	298899;298900;298901;298902;298903;298904	298901			6	
MEDYTKIEK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1255.5642	0.56421954	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	51.486	42.158	2	5.0999E-09	16927	160513_QHF_FH_JSI11Kac_1	105.78	93.196			0.94707	0.99658	6.6744	6	0	Median	NaN	NaN	NaN	0	0	Median	0.88387	1.0175	4.1516	2	0	Median	0.94831	0.92353	2.4517	2	0	Median	0.9903	1.0451	5.501	2	0	Median	219840000	116380000	103450000	0	0	0	66970000	33674000	33296000	55669000	30894000	24775000	97201000	51817000	45384000	36001	850	34051	221606;221607;221608;221609;221610;221611	298905;298906;298907;298908;298909;298910;298911;298912;298913;298914;298915;298916;298917	298912	505	367	13	
MEDYTKIEK	2	Acetyl (K);Acetyl (Protein N-term)	1239.5693	0.56930492	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	0.471				6	3					1	3	2	3	68.627	59.159	2	4.1649E-08	22817	160513_QHF_FH_JSI11Kac_1	92.062	79.474			0.95142	0.87182	14.879	6	0	Linear	NaN	NaN	NaN	0	0	Median	0.79664	0.91197	15.578	2	0	Median	1.1668	1.1383	18.024	2	0	Median	0.95142	1.0018	6.6428	2	0	Median	179460000	96370000	83091000	0	0	0	79005000	43746000	35259000	35214000	18395000	16819000	65242000	34229000	31013000	36002	850	34051	221612;221613;221614;221615;221616;221617;221618;221619;221620	298918;298919;298920;298921;298922;298923;298924;298925;298926;298927;298928;298929;298930;298931	298927	505		14	
MEEAELVK	1	Acetyl (Protein N-term)	989.47395	0.47394797	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	1	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	56.717	56.062	2	0.00023883	50787	160511_QHF_FH_JSI12i_1	79.469	56.846			1.0111	1.1166	23.182	4	0	Median	0.84277	0.71704	NaN	1	0	Median	0.9274	1.1044	NaN	1	0	Median	1.2292	1.1774	NaN	1	0	Median	1.1024	1.129	NaN	1	0	Median	138850000	73263000	65589000	32463000	21494000	10969000	37060000	19917000	17143000	35758000	14326000	21432000	33571000	17526000	16045000	36003	4886	34052	221621;221622;221623;221624	298932;298933	298932			2	
MEEANIQPNR	0	Oxidation (M)	1216.5506	0.55063516	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	1	4	1	17.775	15.962	2	2.4815E-05	16429	160511_QHF_FH_JSI10i_1	99.305	86.328			1.3421	1.2708	24.439	5	1	Median	1.2972	1.0681	NaN	1	0	Median	0.91864	1.1119	NaN	1	0	Median	1.3801	1.3383	24.149	3	1	Median	NaN	NaN	NaN	0	0	Median	249480000	119260000	130220000	56540000	24702000	31838000	80408000	46689000	33719000	112530000	47868000	64661000	0	0	0	36004	1544	34053	221625;221626;221627;221628;221629;221630;221631;221632	298934;298935;298936;298937;298938;298939;298940;298941;298942	298940		1215	9	
MEEANIQPNR	0	Unmodified	1200.5557	0.55572054	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.09	4	3				3	4			1	5	3	5	23.482	18.921	2	5.6734E-15	16605	160511_QHF_FH_JSI12i_1	168.27	146.97			0.90094	0.94346	20.454	13	4	Median	1.4496	1.1825	NaN	1	0	Median	0.80131	0.94346	23.3	5	2	Median	1.0883	1.0553	11.607	3	0	Plateau	0.91696	0.96534	24.081	4	2	Median	2009800000	997530000	1012300000	439390000	187010000	252380000	684820000	363980000	320850000	383380000	203170000	180210000	502240000	243370000	258870000	36005	1544	34053	221633;221634;221635;221636;221637;221638;221639;221640;221641;221642;221643;221644;221645;221646	298943;298944;298945;298946;298947;298948;298949;298950;298951;298952;298953;298954;298955;298956;298957	298945			15	
MEEANIQPNRVTYQR	0	Unmodified	1847.8948	0.89483001	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			34.491	33.07	3	0.051579	27574	160511_QHF_FH_JSI10i_3	27.335	21.431			1.5012	1.6656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5012	1.6656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20720000	8285600	12434000	0	0	0	20720000	8285600	12434000	0	0	0	0	0	0	36006	1544	34054	221647	298958	298958			1	
MEEASEGGGNDR	0	Acetyl (Protein N-term)	1292.4939	0.49390814	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	4.33	4.71	2			1							1	1	1	20.156	17.439	2	1.5274E-07	15442	160511_QHF_FH_JSI12i_1	178.84	177.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36007	4459	34055	221648;221649;221650	298959;298960;298961	298959			3	
MEEASEGGGNDR	0	Acetyl (Protein N-term);Oxidation (M)	1308.4888	0.48882277	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	1	1	0				By MS/MS	11	0				1									1	9.552	2.0227	2	0.0033068	2826	160513_QHF_FH_JSI12Kacf_1	52.79	52.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36008	4459	34055	221651	298962	298962		2475	1	
MEEASEGGGNDRVR	0	Acetyl (Protein N-term)	1547.6634	0.66343309	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	21.397	21.097	2	7.4342E-05	18124	160511_QHF_FH_JSI10i_1	104.22	96.576			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36009	4459	34056	221652;221653;221654	298963;298964;298965	298965			3	
MEEASEGGGNDRVR	0	Acetyl (Protein N-term);Oxidation (M)	1563.6583	0.65834771	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	1	1	1				By MS/MS	1	0	1												1	21.565	21.062	2	0.0019405	18419	160511_QHF_FH_JSI12i_1	67.726	60.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36010	4459	34056	221655	298966	298966		2475	1	
MEEDPDDVPHGHITSLAVK	1	Unmodified	2088.9786	0.97861922	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		3	4						1	1	1	4	2	47.687	47.36	3;4	4.1161E-14	40406	160511_QHF_FH_JSI12i_3	122.57	118.02			0.94153	0.96092	20.204	6	3	Median	NaN	NaN	NaN	0	0	Median	0.63847	0.7512	NaN	1	1	Median	1.2889	1.2273	25.101	3	2	Plateau	0.94153	0.96092	1.3478	2	0	Median	642560000	305580000	336980000	0	0	0	16559000	11241000	5317500	217250000	95498000	121750000	408750000	198840000	209910000	36011	1514	34057	221656;221657;221658;221659;221660;221661;221662;221663	298967;298968;298969;298970;298971;298972;298973;298974;298975;298976;298977;298978	298977			12	
MEEDPDDVPHGHITSLAVK	1	Oxidation (M)	2104.9735	0.97353384	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	42.673	42.45	4	0.025856	36249	160511_QHF_FH_JSI12i_3	30.767	27.44			1.5376	1.6449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5376	1.6449	NaN	1	1	Median	20478000	8080700	12397000	0	0	0	0	0	0	0	0	0	20478000	8080700	12397000	36012	1514	34057	221664	298979	298979			1	
MEEDQELERK	1	Acetyl (Protein N-term)	1347.5976	0.59764493	959	P0DPB6;P0DPB5			yes	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	30.733	29.998	2	5.5728E-14	26919	160511_QHF_FH_JSI12i_1	120.15	103.48			0.90181	0.91368	63.149	5	2	Median	1.3991	1.1719	123.42	2	2	Median	0.9137	1.0605	NaN	1	0	Median	0.90181	0.884	NaN	1	0	Median	0.88796	0.91368	NaN	1	0	Median	537440000	278890000	258550000	71901000	34464000	37437000	153710000	82419000	71288000	139600000	70016000	69581000	172240000	91992000	80247000	36013	959	34058	221665;221666;221667;221668;221669	298980;298981;298982;298983;298984;298985;298986;298987;298988;298989	298984			10	
MEEDQELERK	1	Acetyl (Protein N-term);Oxidation (M)	1363.5926	0.59255956	959	P0DPB6;P0DPB5			yes	no	0	1	1	1	By MS/MS				1	0	1									1				31.258	29.986	2	0.0047357	26168	160511_QHF_FH_JSI9i_1	49.472	44.86			8.7821	7.1689	NaN	1	1	Median	8.7821	7.1689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17709000	949080	16760000	17709000	949080	16760000	0	0	0	0	0	0	0	0	0	36014	959	34058	221670	298990	298990		533	1	
MEEESGAPGVPSGNGAPGPK	1	Unmodified	1866.8418	0.84179138	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	3.85	6				1					1	1	2	3	35.162	33.442	2;3	1.3383E-82	30005	160511_QHF_FH_JSI11i_1	307.33	277.19			0.97775	1.0278	44.775	7	0	Median	1.1345	0.92229	NaN	1	0	Median	0.86181	1.0278	NaN	1	0	Median	0.71538	0.69038	69.345	2	0	Median	0.62113	0.66045	54.571	3	0	Plateau	1924700000	1083300000	841350000	294870000	143410000	151460000	296400000	164480000	131920000	666050000	362320000	303730000	667340000	413090000	254250000	36015	1765	34059	221671;221672;221673;221674;221675;221676;221677	298991;298992;298993;298994;298995;298996;298997;298998;298999;299000;299001;299002	298992			11	
MEEESGAPGVPSGNGAPGPK	1	Oxidation (M)	1882.8367	0.83670601	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	1	3	31.493	30.801	2	7.1445E-11	30278	160511_QHF_FH_JSI12i_1	133.04	124.64			0.76212	0.83534	36.951	4	4	Median	0.54053	0.44983	NaN	1	1	Median	0.69293	0.78085	NaN	1	1	Median	1.0861	1.0551	NaN	1	1	Median	0.83821	0.89363	NaN	1	1	Median	113190000	67124000	46069000	37156000	14522000	22634000	20597000	15669000	4927600	17045000	10032000	7012500	38396000	26901000	11495000	36016	1765	34059	221678;221679;221680;221681;221682;221683;221684;221685	299003;299004;299005;299006;299007;299008;299009;299010	299005		1443	8	
MEEESQSQGR	0	Unmodified	1179.4826	0.48261518	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	3.4	4.8	4					1				1	1	2	1	5.41	3.6941	2	0.00013865	3050	160511_QHF_FH_JSI10i_1	83.783	41.184			0.8448	0.80745	10.236	5	0	Median	0.8628	0.71223	NaN	1	0	Median	0.64057	0.75735	NaN	1	0	Median	0.87719	0.85702	8.4248	2	0	Median	0.8448	0.88267	NaN	1	0	Median	415190000	227810000	187380000	80148000	43286000	36862000	110400000	65354000	45044000	99835000	51810000	48025000	124810000	67358000	57454000	36017	2560	34060	221686;221687;221688;221689;221690	299011;299012;299013	299013			3	
MEEETEVRESEK	1	Unmodified	1494.6508	0.65080272	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		12.908	12.67	2	0.0040576	10328	160511_QHF_FH_JSI10i_1	94.309	74.006			16.646	19.458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16.646	19.458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147720000	12698000	135020000	0	0	0	147720000	12698000	135020000	0	0	0	0	0	0	36018	4686	34061	221691;221692	299014;299015	299015			2	
MEEGEVYAIETFGSTGK	1	Unmodified	1846.8295	0.82949536	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								3	3	3	3	72.937	72.445	2;3	2.0277E-30	65621	160511_QHF_FH_JSI10i_1	191.06	164.94			1.3233	1.3556	26.784	8	3	Median	1.9531	1.5964	NaN	1	1	Median	0.87473	1.0156	36.807	3	2	Median	1.4339	1.3713	6.6914	2	0	Median	1.176	1.223	19.626	2	0	Median	488940000	222000000	266950000	73216000	26001000	47215000	186520000	100800000	85720000	125070000	49266000	75808000	104140000	45934000	58202000	36019	1712	34062	221693;221694;221695;221696;221697;221698;221699;221700;221701;221702;221703;221704	299016;299017;299018;299019;299020;299021;299022;299023;299024;299025;299026;299027;299028	299023			11	
MEEGGRDK	1	Acetyl (Protein N-term)	962.41274	0.4127447	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	1	3	7.8074	7.4044	2	0.00021138	5123	160511_QHF_FH_JSI11i_1	84.244	73.83			0.81879	0.8048	154.3	4	1	Median	0.93871	0.77417	NaN	1	0	Median	0.79285	0.95597	NaN	1	0	Median	0.84557	0.83664	NaN	1	0	Median	0.036885	0.039129	NaN	1	1	Median	2020600000	1202900000	817750000	573140000	286340000	286800000	676390000	380670000	295720000	432370000	207790000	224580000	338750000	328100000	10654000	36020	2370	34063	221705;221706;221707;221708;221709;221710	299029;299030;299031;299032;299033;299034;299035;299036;299037	299029			9	
MEEGGRDK	1	Acetyl (Protein N-term);Oxidation (M)	978.40766	0.40765932	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	1	1	1	By matching		By matching		1	0	2									1		1		7.7913	7.3906	2	1			NaN	NaN			1.2236	1.1008	18.36	2	0	Median	1.4969	1.2534	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0002	0.96675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146010000	67186000	78824000	66632000	29137000	37494000	0	0	0	79378000	38048000	41329000	0	0	0	36021	2370	34063	221711;221712					0	
MEEIGILVEK	1	Acetyl (Protein N-term)	1201.6264	0.62642587	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.14	101.04	2	7.5324E-06	91692	160511_QHF_FH_JSI10i_1	64.297	58.816			0.80491	0.87665	49.928	4	3	Median	1.5642	1.2955	NaN	1	1	Median	0.99973	1.1748	NaN	1	0	Median	0.4635	0.45064	NaN	1	1	Median	0.64805	0.65418	NaN	1	1	Median	472540000	173550000	298990000	98928000	14739000	84189000	134890000	55710000	79180000	124220000	49653000	74563000	114500000	53451000	61053000	36022	1567	34064	221713;221714;221715;221716	299038;299039;299040;299041	299040			4	
MEEIVEGCTGALHILAR	0	Unmodified	1897.939	0.93900301	1065;1422	P14923;P35222	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	no	no	0	0	0	0				By MS/MS	3	0			1										1	71.386	71.089	3	0.00033472	61580	160511_QHF_FH_JSI12i_3	53.255	47.595			1.208	1.1312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.208	1.1312	NaN	1	1	Median	32053000	14514000	17539000	0	0	0	0	0	0	0	0	0	32053000	14514000	17539000	36023	1065;1422	34065	221717	299042	299042			1	
MEELHNQEMQK	1	Unmodified	1415.6173	0.61733452	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		14								2	4	4	4	16.321	15.634	2;3	1.5173E-06	13006	160511_QHF_FH_JSI9i_2	113.61	99.93			1.2408	1.403	85.522	10	10	Median	3.5406	3.0722	NaN	1	1	Median	0.73639	0.89413	83.225	2	2	Median	1.1751	1.2221	58.665	3	3	Median	0.90494	1.0039	116.58	4	4	Median	651110000	321050000	330070000	56960000	10596000	46363000	164230000	97405000	66822000	227560000	94467000	133090000	202370000	118580000	83789000	36024	1222	34066	221718;221719;221720;221721;221722;221723;221724;221725;221726;221727;221728;221729;221730;221731	299043;299044;299045;299046;299047;299048;299049;299050;299051;299052;299053;299054;299055;299056	299048			14	
MEELHNQEMQK	1	Oxidation (M)	1431.6122	0.61224914	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		15.797	15.56	2	0.023011	12528	160511_QHF_FH_JSI11i_2	63.216	54.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8975200	0	8975200	0	0	0	0	0	0	8975200	0	8975200	0	0	0	36025	1222	34066	221732	299057	299057		851	1	
MEELHNQEVQK	1	Unmodified	1383.6453	0.64526383	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.18	3	10					2			2	3	5	5	15.736	14.132	2;3	2.1871E-06	11753	160511_QHF_FH_JSI9i_2	118.28	82.834			1.3793	1.4938	78.518	14	13	Median	1.1979	1.0172	NaN	1	1	Median	1.1252	1.3103	66.23	3	2	Median	1.8757	1.7996	101.26	5	5	Median	1.5882	1.7031	72.266	5	5	Median	1061600000	439180000	622440000	74508000	23250000	51259000	85012000	47581000	37431000	380750000	102300000	278450000	521360000	266050000	255300000	36026	2644	34067	221733;221734;221735;221736;221737;221738;221739;221740;221741;221742;221743;221744;221745;221746;221747	299058;299059;299060;299061;299062;299063;299064;299065;299066;299067;299068;299069;299070;299071;299072;299073	299067			16	
MEELHNQEVQK	1	Oxidation (M)	1399.6402	0.64017845	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	0	By MS/MS				2	0		1								1				15.088	14.371	2	0.0065452	11785	160511_QHF_FH_JSI9i_2	59.908	41.596			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36027	2644	34067	221748	299074	299074		2064	1	
MEELLRR	0	Acetyl (Protein N-term)	987.51715	0.51715019	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.767	58.845	2	3.0145E-06	52122	160511_QHF_FH_JSI10i_2	149.4	124.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36028	4817	34068	221749;221750;221751;221752	299075;299076;299077;299078	299078			4	
MEELSADEIRR	0	Acetyl (Protein N-term)	1389.6558	0.65582851	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		54.632	54.22	2	4.9161E-05	49154	160511_QHF_FH_JSI11i_1	93.649	74.545			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36029	647	34069	221753	299079	299079			1	
MEEPLPAK	1	Unmodified	913.4579	0.45790397	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			6.1166	5.6878	2	0.0070124	3776	160511_QHF_FH_JSI10i_2	58.981	1.7002			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36030	3821	34070	221754	299080	299080			1	
MEEQGLADASLLK	1	Unmodified	1403.6966	0.6966307	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.949	59.522	2	9.7304E-06	53720	160511_QHF_FH_JSI11i_1	146.36	126.75			0.97392	0.95584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97392	0.95584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5382600000	2503300000	2879300000	0	0	0	0	0	0	5382600000	2503300000	2879300000	0	0	0	36031	5227	34071	221755	299081;299082	299082			2	
MEESEPERK	1	Acetyl (Protein N-term)	1175.5129	0.51285267	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	1	0	1	By MS/MS	By MS/MS			1	0	2									1	1			14.154	13.55	2	0.0035029	10908	160511_QHF_FH_JSI9i_1	37.549	31.446			1.3049	1.2855	11.727	2	0	Median	1.6731	1.3967	NaN	1	0	Median	1.0177	1.1832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64965000	28967000	35998000	23605000	10557000	13047000	41361000	18410000	22951000	0	0	0	0	0	0	36032	5347	34072	221756;221757	299083;299084	299084			2	
MEESFSSK	1	Unmodified	943.3957	0.39569765	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.891	15.422	2	0.0024625	13097	160511_QHF_FH_JSI12i_1	79.906	19.548			0.99661	0.8929	11.499	4	0	Linear	1.4868	1.2217	NaN	1	0	Median	0.79831	0.96413	NaN	1	0	Median	1.1033	1.0656	NaN	1	0	Median	0.90027	0.95355	NaN	1	0	Median	2632800000	1200800000	1432000000	585030000	258280000	326750000	656750000	296030000	360720000	628730000	258730000	370000000	762250000	387750000	374500000	36033	1527	34073	221758;221759;221760;221761	299085;299086;299087;299088;299089;299090	299087			6	
MEESFSSK	1	Oxidation (M)	959.39061	0.39061227	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				16.499	15.437	2	0.033165	12764	160511_QHF_FH_JSI9i_1	44.349	39.494			2.4709	2.0205	NaN	1	0	Median	2.4709	2.0205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91243000	34876000	56367000	91243000	34876000	56367000	0	0	0	0	0	0	0	0	0	36034	1527	34073	221762	299091	299091			1	
MEESFSSKYVPK	2	Acetyl (K)	1472.6857	0.68573166	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	62.745	51.923	2	0.0011743	28863	160513_QHF_FH_JSI12Kac_4	81.865	68.512			0.81983	0.29723	67.2	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.25738	0.29723	NaN	1	1	Median	0.29241	0.28409	NaN	1	1	Median	0.8658	0.93	NaN	1	0	Median	7040100	5181800	1858200	0	0	0	1559700	1354000	205730	1948400	1844800	103640	3531900	1983100	1548900	36035	1527	34074	221763;221764;221765	299092;299093;299094;299095	299095	1547;1548		4	
MEESMKK	2	Unmodified	881.39867	0.39867454	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		8						4		3	2	3	4	6.5699	2.836	2;3	0.0031209	3641	160511_QHF_FH_JSI12i_2	66.682	47.951			0.96438	0.94498	83.597	11	9	Median	1.8761	1.5855	113.21	3	3	Plateau	0.58455	0.70198	79.043	2	2	Median	0.96548	0.96493	2.9537	2	1	Median	0.73916	0.83144	109.66	4	3	Median	2501200000	1209800000	1291400000	404060000	177690000	226370000	251500000	137170000	114330000	474050000	229190000	244860000	1371600000	665720000	705850000	36036	1765	34075	221766;221767;221768;221769;221770;221771;221772;221773;221774;221775;221776;221777	299096;299097;299098;299099;299100;299101;299102;299103;299104;299105;299106;299107;299108	299098			13	
MEESMKK	2	2 Oxidation (M)	913.3885	0.38850378	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	2	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	6.1524	5.6763	2	0.043277	3626	160511_QHF_FH_JSI12i_2	36.975	19.414			0.91113	1.0089	22.91	3	0	Plateau	1.7468	1.5259	NaN	1	0	Median	0.86469	1.0461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91113	1.0089	NaN	1	0	Median	198050000	98436000	99613000	57421000	25459000	31962000	62868000	33439000	29429000	0	0	0	77760000	39537000	38222000	36037	1765	34075	221778;221779;221780	299109	299109			1	
MEESVNQMQPLNEK	1	Acetyl (Protein N-term)	1717.7651	0.76512097	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.276	62.647	2	3.0475E-30	56750	160511_QHF_FH_JSI10i_1	122.42	106.88			0.94735	0.84756	13.633	4	0	Median	1.0774	0.88157	NaN	1	0	Median	0.66558	0.80422	NaN	1	0	Median	0.87176	0.81487	NaN	1	0	Median	1.0295	1.0805	NaN	1	0	Median	271430000	148270000	123160000	56242000	27493000	28749000	66868000	43282000	23586000	70130000	40859000	29272000	78193000	36642000	41552000	36038	962	34076	221781;221782;221783;221784	299110;299111;299112;299113;299114;299115;299116;299117	299115			8	
MEETPTEYLQR	0	Unmodified	1395.634	0.63403044	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.79	44.397	2	0.0048731	40157	160511_QHF_FH_JSI11i_1	65.347	36.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36039	3634	34077	221785	299118	299118			1	
MEEVAEAAPQELDTIALASEK	1	Unmodified	2244.0831	0.083143867	3477	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	5									2	1	1	1	85.392	84.935	2;3	1.4167E-09	77496	160511_QHF_FH_JSI11i_1	101.48	97.291			0.84671	0.87865	17.447	4	0	Median	0.86421	0.6792	NaN	1	0	Median	0.82957	0.97326	NaN	1	0	Median	0.80499	0.79387	NaN	1	0	Median	0.92919	0.97249	NaN	1	0	Median	111910000	59802000	52112000	25881000	14710000	11171000	28744000	17707000	11037000	27793000	15599000	12195000	29495000	11786000	17709000	36040	3477	34078	221786;221787;221788;221789;221790	299119;299120;299121	299119			2	
MEEVPHDCPGADSAQAGR	0	Acetyl (Protein N-term)	1967.8102	0.81017368	1797	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.204	39.569	2	3.9499E-07	35606	160511_QHF_FH_JSI11i_1	110.51	99.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36041	1797	34079	221791;221792;221793;221794	299122;299123;299124;299125;299126	299122			5	
MEEVVIAGMSGK	1	Acetyl (Protein N-term)	1291.6152	0.61520925	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	5.24	4		2	3	1	3				3	5	2	3	90.046	85.62	2	1.2279E-16	83030	160511_QHF_FH_JSI12i_1	109.42	98.709			0.94095	1.0464	20.961	10	0	Median	1.4009	1.151	11.197	2	0	Median	0.94299	1.1137	32.111	3	0	Median	0.87777	0.85146	6.693	2	0	Median	0.93891	1.0297	9.8363	3	0	Median	3498800000	1740900000	1758000000	899110000	366450000	532660000	817330000	436820000	380510000	846100000	423610000	422480000	936310000	514010000	422300000	36042	1650	34080	221795;221796;221797;221798;221799;221800;221801;221802;221803;221804;221805;221806;221807	299127;299128;299129;299130;299131;299132;299133;299134;299135;299136;299137;299138;299139;299140;299141;299142;299143;299144;299145	299132			19	
MEEVVIAGMSGK	1	Acetyl (Protein N-term);Oxidation (M)	1307.6101	0.61012387	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	5.42	5			2	3	1				1	4	3	3	71.148	65.245	2	1.1006E-06	28133	160513_QHF_FH_JSI12Kac_2	57.836	50.941			0.9434	1.0492	78.895	9	2	Median	9.7594	8.3299	NaN	1	1	Median	0.9905	1.1415	1.4314	3	0	Plateau	0.6558	0.62984	51.27	2	1	Median	0.94087	0.97993	5.8198	3	0	Median	146560000	69572000	76987000	28226000	2081500	26144000	17396000	9284000	8111800	65024000	39463000	25561000	35913000	18743000	17170000	36043	1650	34080	221808;221809;221810;221811;221812;221813;221814;221815;221816;221817;221818	299146;299147;299148;299149;299150;299151;299152;299153;299154;299155	299154		1319;1320	10	
MEEVVIAGMSGK	1	Acetyl (Protein N-term);2 Oxidation (M)	1323.605	0.6050385	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	1	2	0		By MS/MS	By MS/MS	By MS/MS	11.9	0.788				7	7	5					7	8	4	53.517	44.185	2	8.5196E-07	20183	160513_QHF_FH_JSI12Kac_2	55.401	36.776			0.95041	1.0088	13.241	10	0	Median	NaN	NaN	NaN	0	0	Median	0.83582	0.96693	11.165	3	0	Plateau	1.2517	1.1705	19.095	3	0	Plateau	0.93046	0.99891	8.7354	4	0	Median	38177000	19923000	18254000	0	0	0	16039000	9447700	6591500	5655100	2437000	3218100	16483000	8038600	8444500	36044	1650	34080	221819;221820;221821;221822;221823;221824;221825;221826;221827;221828;221829;221830;221831;221832;221833;221834;221835;221836;221837	299156;299157;299158;299159;299160;299161;299162;299163;299164;299165;299166;299167;299168;299169;299170;299171;299172;299173;299174	299174		1319;1320	19	
MEEVYLPDNINEGQVQVR	0	Unmodified	2132.0208	0.020818382	3567	Q8N8N7	PTGR2	Prostaglandin reductase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.318	72.045	2	0.00017198	65275	160511_QHF_FH_JSI10i_1	88.101	74.422			0.61664	0.71406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61664	0.71406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38415000	32111000	6304000	0	0	0	27462000	21158000	6304000	10953000	10953000	0	0	0	0	36045	3567	34081	221838;221839	299175;299176	299176			2	
MEFDLGAALEPTSQK	1	Acetyl (Protein N-term)	1677.792	0.79198764	4599	Q9GZP8	IMUP	Immortalization up-regulated protein	yes	yes	0	1	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.28	101.2	2	5.6213E-05	91761	160511_QHF_FH_JSI12i_1	63.727	49.053			0.99493	1.127	3.6388	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91661	1.0983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0799	1.1563	NaN	1	0	Median	235460000	113310000	122160000	0	0	0	128360000	64238000	64121000	0	0	0	107100000	49067000	58034000	36046	4599	34082	221840;221841	299177;299178	299177			1	
MEFQAVVMAVGGGSR	0	Acetyl (Protein N-term)	1579.7487	0.74868304	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		102.18	102.13	2	1.8729E-07	92852	160511_QHF_FH_JSI11i_1	131.66	116.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36047	4946	34084	221842;221843	299179;299180	299179			2	
MEFSGGGLLL	0	Unmodified	1022.5107	0.51066783	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	96.99	96.827	2	0.0018368	87931	160511_QHF_FH_JSI12i_1	63.48	63.48			1.2174	1.2841	30.153	3	1	Median	NaN	NaN	NaN	0	0	Median	0.75088	0.78898	NaN	1	1	Median	1.3986	1.3695	NaN	1	0	Median	1.2174	1.2841	NaN	1	0	Median	14968000	7339700	7628100	0	0	0	5310800	2915800	2395000	3703100	1572500	2130600	5953900	2851400	3102500	36048	2892	34085	221844;221845;221846;221847	299181;299182;299183;299184	299182			4	
MEFVSEVQR	0	Unmodified	1123.5332	0.53319418	4550	Q9BYN8	MRPS26	28S ribosomal protein S26, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.737	42.765	2	0.0038734	36609	160511_QHF_FH_JSI11i_2	58.426	30.208			0.93202	0.96929	7.7116	4	0	Median	1.1611	0.99892	NaN	1	0	Median	0.70252	0.84266	NaN	1	0	Median	0.97718	0.98223	NaN	1	0	Median	0.88894	0.95653	NaN	1	0	Median	238770000	128300000	110470000	44427000	23667000	20760000	63400000	38544000	24856000	99219000	50084000	49135000	31724000	16008000	15716000	36049	4550	34086	221848;221849;221850;221851	299185;299186;299187;299188	299187			4	
MEGDAVEAIVEESETFIK	1	Acetyl (Protein N-term)	2037.9453	0.9452534	1671	P49711	CTCF	Transcriptional repressor CTCF	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	103.46	103.37	2	1.8358E-41	91476	160511_QHF_FH_JSI9i_1	111.12	94.181			1.3201	1.2368	22.586	2	0	Median	1.7687	1.451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9853	1.0543	NaN	1	0	Median	119130000	84353000	34777000	22062000	8379900	13682000	21411000	21411000	0	32447000	32447000	0	43210000	22115000	21095000	36050	1671	34087	221852;221853;221854;221855	299189;299190;299191	299191			3	
MEGGFGSDFGGSGSGK	1	Acetyl (Protein N-term)	1517.6093	0.60927225	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.983	63.358	2	1.1807E-10	57428	160511_QHF_FH_JSI10i_1	104.59	103.76			1.0664	1.031	5.4663	4	0	Median	1.1977	0.99819	NaN	1	0	Median	0.81297	0.95379	NaN	1	0	Median	1.0954	1.0649	NaN	1	0	Median	1.0382	1.0682	NaN	1	0	Median	419890000	201690000	218190000	95523000	46586000	48937000	96827000	48352000	48475000	125500000	54025000	71471000	102040000	52727000	49312000	36051	5668	34088	221856;221857;221858;221859	299192;299193;299194;299195;299196;299197;299198	299196			7	
MEGGFGSDFGGSGSGK	1	Acetyl (Protein N-term);Oxidation (M)	1533.6042	0.60418687	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	1	1	0			By MS/MS		12	0					1							1		56.235	46.75	2	0.029453	19246	160513_QHF_FH_JSI11Kac_2	37.426	37.426			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36052	5668	34088	221860	299199	299199			1	
MEGGGAEVHAQLPSLEGDLRGPDVK	1	Unmodified	2561.2544	0.25440015	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	65.228	65.081	4	2.1732E-08	56112	160511_QHF_FH_JSI12i_3	77.19	69.386			1.4149	1.3597	0.30694	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4723	1.3627	NaN	1	1	Median	1.3598	1.3568	NaN	1	1	Median	237890000	94527000	143370000	0	0	0	0	0	0	86504000	34502000	52002000	151390000	60025000	91366000	36053	2286	34089	221861;221862	299200;299201	299201			2	
MEGGGGSGNK	1	Acetyl (Protein N-term)	934.38144	0.38144457	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	1	0	0				By MS/MS	1	0	1												1	7.7295	7.3773	2	0.0039333	5312	160511_QHF_FH_JSI12i_1	53.327	21.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56814000	0	56814000	0	0	0	0	0	0	0	0	0	56814000	0	56814000	36054	219	34090	221863	299202	299202			1	
MEGGLGR	0	Acetyl (Protein N-term)	760.35377	0.35377325	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			29.47	29.145	1	0.0028184	26014	160511_QHF_FH_JSI10i_1	71.378	41.536			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36055	1433	34091	221864	299203	299203			1	
MEGGTENDLR	0	Unmodified	1120.4819	0.48188689	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.674	13.237	2	2.0646E-10	10852	160511_QHF_FH_JSI10i_1	140.75	68.269			1.1349	1.396	17.559	4	0	Linear	1.235	1.0263	NaN	1	0	Median	0.82408	0.95551	NaN	1	0	Median	1.0428	1.0307	NaN	1	0	Median	1.3204	1.4159	NaN	1	0	Median	912850000	399620000	513230000	202830000	69438000	133390000	199250000	95164000	104090000	228480000	97130000	131350000	282280000	137890000	144400000	36056	4521	34092	221865;221866;221867;221868	299204;299205;299206;299207;299208;299209	299208			6	
MEGHEAMER	0	Unmodified	1088.4379	0.43791359	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	7.3431	6.9201	3	0.05685	4553	160511_QHF_FH_JSI11i_2	31.286	24.85			0.91011	0.9762	16.758	4	0	Median	1.5427	1.3277	NaN	1	0	Median	0.78768	0.96368	NaN	1	0	Median	0.89973	0.91544	NaN	1	0	Median	0.92061	0.98888	NaN	1	0	Median	178370000	93316000	85050000	43446000	17136000	26310000	35050000	17514000	17536000	57332000	37780000	19552000	42537000	20886000	21651000	36057	3813	34093	221869;221870;221871;221872	299210	299210			0	
MEGIGLK	1	Unmodified	746.39966	0.39966081	583	O75915	ARL6IP5	PRA1 family protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	32.356	31.593	2	0.012077	27440	160511_QHF_FH_JSI9i_2	75.311	50.312			0.90994	0.98622	54.506	8	2	Median	0.94214	0.79923	108.5	2	1	Median	1.0242	1.2272	13.964	2	0	Median	0.70818	0.70138	31.245	2	1	Median	0.80895	0.86877	66.498	2	0	Median	1173300000	613830000	559440000	186410000	107190000	79224000	322690000	153670000	169020000	423350000	219510000	203840000	240810000	133460000	107350000	36058	583	34094	221873;221874;221875;221876;221877;221878;221879;221880	299211;299212;299213;299214;299215;299216	299214			6	
MEGISNFK	1	Acetyl (Protein N-term)	966.44807	0.44806757	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	2.83	4.1	5				1					2		2	2	62.035	61.303	1;2	0.00022016	54474	160511_QHF_FH_JSI9i_1	57.177	10.111			1.0748	0.98271	191.49	5	1	Median	1.0844	0.897	12.906	2	0	Median	NaN	NaN	NaN	0	0	Median	7.2671	7.0207	314.44	2	1	Median	1.0748	1.1126	NaN	1	0	Median	434920000	184000000	250920000	191060000	99582000	91479000	0	0	0	125420000	25837000	99579000	118440000	58581000	59860000	36059	4154	34095	221881;221882;221883;221884;221885;221886	299217;299218;299219;299220;299221;299222;299223;299224	299222			8	
MEGLVVAAGGDVSLHNFSAR	0	Acetyl (Protein N-term)	2071.0157	0.015673424	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		98.779	98.653	2	9.8738E-19	86548	160511_QHF_FH_JSI11i_2	186.68	172.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36060	2901	34096	221887;221888;221889	299225;299226;299227;299228;299229;299230;299231	299229			7	
MEGMDDDPEDR	0	Unmodified	1308.4598	0.45983082	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				23.634	22.428	2	0.042484	19087	160511_QHF_FH_JSI9i_1	44.98	44.98			2.052	1.675	NaN	1	1	Median	2.052	1.675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17691000	5042500	12649000	17691000	5042500	12649000	0	0	0	0	0	0	0	0	0	36061	5268	34097	221890	299232;299233	299232			2	
MEGNGPAAVHYQPASPPR	0	Acetyl (Protein N-term)	1919.8948	0.89483001	4107	Q96HA8	WDYHV1	Protein N-terminal glutamine amidohydrolase	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	48.341	47.926	2	1.1144E-16	43105	160511_QHF_FH_JSI10i_1	119.62	110.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36062	4107	34098	221891;221892;221893	299234;299235;299236	299236			3	
MEGPLSVFGDR	0	Acetyl (Protein N-term);Oxidation (M)	1264.5758	0.57578728	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	3	2	3	81.495	76.563	2	8.5518E-06	72391	160511_QHF_FH_JSI12i_1	105.2	102.49			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36063	1132	34099	221894;221895;221896;221897;221898;221899;221900;221901;221902	299237;299238;299239;299240;299241;299242;299243;299244;299245;299246;299247	299238		759	11	
MEGPLSVFGDR	0	Acetyl (Protein N-term)	1248.5809	0.58087266	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	97.202	97.022	2	3.8212E-12	85964	160511_QHF_FH_JSI9i_1	199.86	191.09			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36064	1132	34099	221903;221904;221905;221906;221907;221908	299248;299249;299250;299251;299252;299253;299254;299255;299256;299257;299258;299259;299260	299257			13	
MEGQSVEELLAK	1	Acetyl (Protein N-term)	1374.6701	0.67008159	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.308	87.865	2	1.6929E-11	78197	160511_QHF_FH_JSI9i_1	116.52	106.74			0.95071	0.9637	7.657	4	0	Median	0.97136	0.82801	NaN	1	0	Median	0.82817	0.96529	NaN	1	0	Median	1.0009	0.96752	NaN	1	0	Median	0.93049	0.96211	NaN	1	0	Median	266370000	139510000	126860000	65673000	30356000	35318000	68786000	39876000	28909000	79369000	43858000	35512000	52537000	25418000	27119000	36065	2617	34100	221909;221910;221911;221912	299261;299262;299263;299264;299265	299265			4	
MEGSGEQPGPQPQHPGDHR	0	Acetyl (Protein N-term)	2081.8973	0.8973492	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	1	0	0	By MS/MS				2	0		1								1				21.444	20.486	3	0.0076306	17410	160511_QHF_FH_JSI9i_2	47.223	46.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36066	5340	34101	221913	299266	299266			1	
MEGVEEK	1	Acetyl (Protein N-term)	862.37423	0.37423392	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	26.622	25.994	1;2	0.0028197	22966	160511_QHF_FH_JSI11i_1	68.915	43.088			1.132	1.1195	13.594	7	0	Median	1.2832	1.0266	8.541	2	0	Median	1.0014	1.1823	6.6482	2	0	Median	1.132	1.1195	NaN	1	0	Median	1.1691	1.2428	24.362	2	0	Median	4498200000	2209800000	2288400000	1481000000	668790000	812230000	1432100000	716520000	715620000	418940000	195470000	223470000	1166100000	629060000	537050000	36067	1138	34102	221914;221915;221916;221917;221918;221919;221920	299267;299268;299269;299270;299271;299272;299273;299274;299275	299268			9	
MEGVEEK	1	Acetyl (Protein N-term);Oxidation (M)	878.36915	0.36914855	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	2.66	12			1						3	2	4	4	21.218	19.962	1;2	0.0020389	4170	160513_QHF_FH_JSI11Kac_1	57.281	33.309			1.1215	0.9955	47.817	11	1	Median	1.2308	0.99017	62.942	3	0	Median	0.86741	0.9955	NaN	1	0	Median	1.0838	1.052	7.093	3	0	Median	1.0968	1.1374	62.044	4	1	Median	1156000000	559740000	596260000	379100000	169350000	209750000	117020000	61303000	55717000	202440000	96007000	106440000	457440000	233080000	224360000	36068	1138	34102	221921;221922;221923;221924;221925;221926;221927;221928;221929;221930;221931;221932;221933	299276;299277;299278;299279;299280;299281;299282;299283;299284	299283		766	9	
MEGVSALLAR	0	Acetyl (Protein N-term)	1087.5696	0.56957969	2922	Q5SNT2	TMEM201	Transmembrane protein 201	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	91.856	91.433	2	0.00018176	83031	160511_QHF_FH_JSI12i_1	85.731	75.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36069	2922	34103	221934;221935;221936	299285;299286;299287	299285			3	
MEGYPWWPCLVYNHPFDGTFIR	0	Unmodified	2784.2617	0.26173413	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.633	86.233	3	0.033041	48802	160513_QHF_FH_JSI11Kac_6	27.127	16.676			4.1211	3.962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1211	3.962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122110000	17229000	104880000	0	0	0	0	0	0	122110000	17229000	104880000	0	0	0	36070	1778	34104	221937	299288	299288			1	
MEHFDASLSTYFK	1	Acetyl (Protein N-term)	1616.7181	0.71809442	5132	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.174	91.662	2	4.0411E-06	80705	160511_QHF_FH_JSI9i_2	91.855	89.442			1.1395	1.112	9.3999	4	0	Median	1.1725	0.99827	NaN	1	0	Median	0.88148	1.0677	NaN	1	0	Median	1.1303	1.1582	NaN	1	0	Median	1.1488	1.2382	NaN	1	0	Median	254100000	123390000	130710000	60327000	27294000	33033000	57528000	28357000	29171000	79241000	38510000	40731000	57007000	29229000	27778000	36071	5132	34105	221938;221939;221940;221941	299289;299290;299291;299292;299293;299294	299291			6	
MEIGLPDEK	1	Unmodified	1030.5005	0.50049707	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.272	51.603	2	0.00083486	46687	160511_QHF_FH_JSI11i_1	73.233	50.191			1.5244	1.5536	13.564	4	0	Median	1.5433	1.2695	NaN	1	0	Median	1.5058	1.7535	NaN	1	0	Median	1.645	1.5953	NaN	1	0	Median	1.4733	1.5131	NaN	1	0	Median	522370000	199600000	322760000	122060000	40033000	82029000	136910000	55525000	81385000	163020000	60937000	102090000	100370000	43108000	57263000	36072	1586	34106	221942;221943;221944;221945	299295;299296;299297;299298;299299;299300;299301	299296			7	
MEIGTEISRK	1	Acetyl (Protein N-term)	1204.6122	0.61217279	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		50.158	49.743	2	0.0038363	45029	160511_QHF_FH_JSI11i_1	46.819	39.251			1.1294	1.0938	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1294	1.0938	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40610000	21993000	18617000	0	0	0	0	0	0	40610000	21993000	18617000	0	0	0	36073	3128	34107	221946	299302	299302			0	
MEIIQVPGYTQEEK	1	Unmodified	1663.8127	0.81272309	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	68.616	68.105	2	3.4344E-06	60507	160511_QHF_FH_JSI9i_1	132.59	99.981			0.88	0.90455	14.314	5	3	Median	1.0179	0.82924	NaN	1	1	Median	0.69459	0.78976	20.513	2	2	Median	1.022	0.99581	NaN	1	0	Median	0.88	0.90455	NaN	1	0	Median	193890000	106440000	87453000	38582000	18124000	20458000	65928000	30301000	35627000	42360000	24785000	17575000	47021000	33228000	13793000	36074	3355	34108	221947;221948;221949;221950;221951	299303;299304;299305;299306;299307;299308;299309	299309			7	
MEIPPTNYPASR	0	Acetyl (Protein N-term)	1416.6708	0.6707503	4391	Q9BS40	LXN	Latexin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		65.217	64.609	2	0.017297	58739	160511_QHF_FH_JSI11i_1	42.001	37.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36075	4391	34109	221952;221953;221954	299310;299311;299312	299310			3	
MEIYRPHK	1	Unmodified	1072.5488	0.54878467	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		18.498	17.38	3	0.0059259	13837	160511_QHF_FH_JSI9i_3	49.097	34.89			0.89504	0.86679	14.677	2	0	Median	0.97777	0.78135	NaN	1	0	Median	0.81932	0.96158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	412410000	219360000	193040000	207300000	108750000	98549000	205110000	110620000	94494000	0	0	0	0	0	0	36076	2438;3882	34110	221955;221956;221957	299313;299314;299315;299316;299317	299316			5	
MEKGEHSIVYLK	2	Acetyl (K)	1474.749	0.74900062	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	54.624	43.994	3	0.00034653	24280	160513_QHF_FH_JSI11Kac_5	76.073	61.72			0.23008	0.22709	138.89	3	1	Median	NaN	NaN	NaN	0	0	Median	1.7718	2.0952	NaN	1	0	Median	0.23008	0.22709	NaN	1	0	Median	0.1493	0.16283	NaN	1	1	Median	41030000	28475000	12555000	0	0	0	10080000	3453500	6626900	29211000	23459000	5752200	1738100	1561900	176170	36077	2193	34111	221958;221959;221960	299318;299319;299320;299321	299318	2306;2310		4	
MEKGEHSIVYLK	2	Acetyl (K);Oxidation (M)	1490.7439	0.74391524	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		47.548	37.063	3	0.003906	20831	160513_QHF_FH_JSI11Kac_5	55.261	40.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5053200	5053200	0	0	0	0	0	0	0	5053200	5053200	0	0	0	0	36078	2193	34111	221961	299322	299322	2306;2310	1836	1	
MEKPPAPPSLPAGPPGVK	2	Unmodified	1768.9546	0.95457672	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	56.525	56.275	3;4	1.4563E-05	49786	160511_QHF_FH_JSI11i_3	84.829	82.443			1.0821	1.156	5.8897	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0836	1.0667	8.3291	2	1	Median	1.0821	1.1086	4.4528	2	0	Median	972910000	450610000	522300000	0	0	0	0	0	0	384160000	167970000	216190000	588750000	282630000	306110000	36079	2672	34112	221962;221963;221964;221965	299323;299324;299325;299326;299327;299328;299329;299330;299331	299323			9	
MEKPPAPPSLPAGPPGVK	2	Oxidation (M)	1784.9495	0.94949134	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	51.15	51.032	3	0.000141	43705	160511_QHF_FH_JSI12i_3	70.942	45.62			0.90883	0.89307	46.045	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69142	0.64489	NaN	1	1	Median	1.1946	1.2368	NaN	1	0	Median	72238000	42127000	30112000	0	0	0	0	0	0	12738000	8029700	4708800	59500000	34097000	25403000	36080	2672	34112	221966;221967	299332;299333;299334	299334		2096	3	
MEKRLGVK	2	Unmodified	959.55862	0.55862107	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	2	By matching	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	102.22	102.12	1	0.057558	92910	160511_QHF_FH_JSI10i_1	16.964	6.1359			1.0827	1.1005	5.3217	4	0	Median	1.2544	1.0384	NaN	1	0	Median	1.0195	1.1788	NaN	1	0	Median	1.1385	1.1166	NaN	1	0	Median	1.0297	1.0846	NaN	1	0	Median	604620000	307450000	297170000	141300000	68894000	72408000	201630000	104580000	97046000	121400000	63229000	58169000	140300000	70745000	69551000	36081	3480	34113	221968;221969;221970;221971	299335	299335			0	
MEKTELIQK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1218.6166	0.61658946	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.373				5	1						2	2	2	59.25	49.826	2	0.00031348	20132	160513_QHF_FH_JSI10Kac_1	69.954	53.751			0.48659	0.46622	42.169	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94355	1.056	NaN	1	0	Median	0.48659	0.46622	NaN	1	0	Median	0.55418	0.58644	NaN	1	0	Median	9538200	6129200	3409000	0	0	0	2585300	1323500	1261800	4057100	2873700	1183400	2895900	1932000	963880	36082	1288	34114	221972;221973;221974;221975;221976;221977	299336;299337;299338;299339;299340;299341;299342	299342	1214	926	7	
MEKTELIQK	2	Acetyl (K);Acetyl (Protein N-term)	1202.6217	0.62167484	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.4				4	1						2	1	2	74.191	65.436	2	0.00039597	25834	160513_QHF_FH_JSI10Kac_1	83.005	70.478			0.54924	0.57903	57.716	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0008	1.1548	NaN	1	0	Median	0.37912	0.36697	NaN	1	0	Median	0.54924	0.57903	NaN	1	0	Median	17000000	10655000	6345500	0	0	0	5658100	2650000	3008200	7463200	5587800	1875500	3879000	2417100	1461900	36083	1288	34114	221978;221979;221980;221981;221982	299343;299344;299345;299346;299347;299348;299349	299349	1214		7	
MEKTLETVPLER	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1544.7756	0.7756093	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	1	1	1	1		By MS/MS		By MS/MS	11.5	0.5				2	2						2		2	75.851	67.406	2	0.00018859	26535	160513_QHF_FH_JSI10Kac_1	82.417	68.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36084	1212	34115	221983;221984;221985;221986	299350;299351;299352;299353	299352	1091	844	4	
MELAQEAR	0	Acetyl (Protein N-term)	988.46478	0.46478027	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		49.739	48.923	2	0.0033881	43514	160511_QHF_FH_JSI9i_1	62.546	41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36085	629	34116	221987;221988;221989	299354;299355;299356	299356			3	
MELCGLGLPR	0	Unmodified	1144.5733	0.57328486	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.855	13.064	3	0.053237	10306	160511_QHF_FH_JSI12i_2	12.956	1.4233			0.75229	0.84322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75229	0.84322	NaN	1	0	Median	85114000	48761000	36353000	0	0	0	0	0	0	0	0	0	85114000	48761000	36353000	36086	874	34117	221990	299357	299357			1	
MELDLEPDTSYGGTLRR	0	Unmodified	1951.9309	0.93094074	3253	Q7Z309	FAM122B	Protein FAM122B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		65.093	64.632	3	4.3982E-06	57494	160511_QHF_FH_JSI11i_3	83.54	67.177			1.0104	0.91392	10.453	2	2	Median	1.1664	0.98403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87522	0.8488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	157640000	78246000	79394000	93864000	44971000	48892000	0	0	0	63776000	33275000	30501000	0	0	0	36087	3253	34118	221991;221992	299358;299359	299358			2	
MELEAMSR	0	Acetyl (Protein N-term)	1007.4416	0.44160198	1942	P61165	TMEM258	Transmembrane protein 258	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.227	60.587	2	0.00058246	54032	160511_QHF_FH_JSI9i_1	92.439	83.023			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36088	1942	34119	221993;221994;221995;221996	299360;299361;299362;299363;299364;299365	299365			6	
MELEDGVVYQEEPGGSGAVMSER	0	Acetyl (Protein N-term)	2510.0941	0.094119259	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			84.098	83.951	3	0.0015856	76276	160511_QHF_FH_JSI10i_1	41.087	37.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36089	404	34120	221997	299366	299366			1	
MELFSQLFIQAVR	0	Unmodified	1580.8385	0.83848433	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	95.62	86.178	2	4.5438E-06	46804	160513_QHF_FH_JSI12Kac_6	139.86	115.87			1.5018	1.6078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5018	1.6078	NaN	1	1	Median	64433000	29170000	35264000	0	0	0	0	0	0	0	0	0	64433000	29170000	35264000	36090	4394	34121	221998	299367	299367			1	
MELGELLYNK	1	Acetyl (Protein N-term)	1250.6217	0.62167484	4415	Q9BTE1	DCTN5	Dynactin subunit 5	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	101.58	101.5	2	3.6471E-09	92076	160511_QHF_FH_JSI12i_1	121.09	107.09			1.2189	1.2309	2.871	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2448	1.2062	NaN	1	0	Median	1.1935	1.2561	NaN	1	0	Median	196150000	78429000	117720000	0	0	0	35745000	0	35745000	98058000	51156000	46902000	62352000	27273000	35078000	36091	4415	34122	221999;222000;222001;222002	299368;299369;299370;299371;299372	299370			4	
MELHILEHR	0	Acetyl (Protein N-term)	1218.6179	0.61792687	29	A6NHX0;Q8WTX7	GATSL2;GATSL3	GATS-like protein 2;GATS-like protein 3	yes	no	0	1	0	0			By MS/MS	By MS/MS	2	0		2										1	1	58.585	57.667	3	0.011285	49981	160511_QHF_FH_JSI11i_2	42.743	35.098			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36092	29	34123	222003;222004	299373;299374	299374			2	
MELIQDTSRPPLEYVK	1	Oxidation (M)	1933.9819	0.98191368	953;1699	P0DMN0;P0DMM9;P50225	SULT1A4;SULT1A3;SULT1A1	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1	no	no	0	0	1	1			By MS/MS		1	0	1											1		96.564	96.303	3	0.005848	87545	160511_QHF_FH_JSI11i_1	45.33	33.856			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36093	953;1699	34124	222005	299375	299375		525	1	
MELIQDTSRPPLEYVK	1	Acetyl (Protein N-term)	1959.9976	0.99756374	953;1699	P0DMN0;P0DMM9;P50225	SULT1A4;SULT1A3;SULT1A1	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1	no	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	3	2	1	96.562	96.384	2;3	1.2604E-05	84681	160511_QHF_FH_JSI9i_2	57.019	33.784			0.2553	0.28773	71.032	5	1	Linear	1.0805	0.91691	NaN	1	0	Median	0.22089	0.25702	NaN	1	1	Median	1.1767	1.1861	38.05	2	0	Median	1.289	1.3516	NaN	1	0	Median	120250000	75361000	44890000	21822000	10627000	11195000	39977000	34390000	5586400	37502000	19950000	17552000	20950000	10393000	10556000	36094	953;1699	34124	222006;222007;222008;222009;222010;222011;222012	299376;299377;299378;299379;299380;299381;299382	299379			7	
MELITILEK	1	Acetyl (Protein N-term)	1130.6257	0.62569758	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.63	4	4	2					1	4	4	4	4	3	102.47	100.52	2	4.3865E-12	89149	160511_QHF_FH_JSI12i_2	117.04	74.927			0.93274	0.94328	10.521	13	0	Median	1.1227	0.92881	18.708	4	0	Median	0.7967	0.93367	6.8461	4	0	Median	0.98619	0.98214	6.335	2	0	Median	0.91024	0.96949	4.891	3	0	Median	7001900000	3624500000	3377400000	1286900000	581350000	705590000	1836600000	1039300000	797310000	1720400000	873320000	847100000	2157900000	1130500000	1027400000	36095	2585	34125	222013;222014;222015;222016;222017;222018;222019;222020;222021;222022;222023;222024;222025;222026;222027	299383;299384;299385;299386;299387;299388;299389;299390;299391;299392;299393;299394;299395;299396;299397;299398;299399;299400;299401;299402;299403;299404;299405;299406;299407	299385			25	
MELITILEK	1	Acetyl (Protein N-term);Oxidation (M)	1146.6206	0.62061221	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.86	6.81	3						1	3		1	3	1	2	98.707	93.529	2	0.00047435	42101	160513_QHF_FH_JSI12Kac_4	55.549	32.121			0.95268	0.99317	74.249	6	1	Median	7.212	5.8812	NaN	1	1	Median	0.82092	0.9145	11.23	2	0	Median	0.97165	0.94884	NaN	1	0	Median	0.95268	1.0198	3.3001	2	0	Median	126350000	54952000	71402000	21499000	1886200	19613000	50560000	25247000	25313000	2030500	910690	1119800	52265000	26908000	25357000	36096	2585	34125	222028;222029;222030;222031;222032;222033;222034	299408;299409;299410;299411;299412;299413	299410		2027	6	
MELLAHLLGEK	1	Unmodified	1252.6849	0.6849438	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.48	0.499		11	10							3	7	6	5	82.398	81.776	2;3	1.8808E-05	70500	160511_QHF_FH_JSI12i_3	131.82	109.29			1.5021	1.5152	95.893	18	17	Median	0.7238	0.61769	93.95	2	2	Median	1.6427	1.9795	117.08	6	5	Median	1.7117	1.6346	76.614	5	5	Median	1.2947	1.4045	108.31	5	5	Median	963640000	427470000	536170000	49403000	21457000	27945000	116460000	48487000	67971000	318880000	149810000	169070000	478890000	207710000	271180000	36097	5526	34126	222035;222036;222037;222038;222039;222040;222041;222042;222043;222044;222045;222046;222047;222048;222049;222050;222051;222052;222053;222054;222055	299414;299415;299416;299417;299418;299419;299420;299421;299422;299423;299424;299425;299426;299427;299428;299429;299430;299431;299432;299433;299434;299435;299436;299437;299438;299439	299437			26	
MELLGEYVGQEGKPQK	2	Acetyl (Protein N-term)	1846.9135	0.91349976	4527	Q9BXV9	C14orf142	Uncharacterized protein C14orf142	yes	yes	0	1	0	1			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	90.9	90.318	2;3	2.5706E-07	82216	160511_QHF_FH_JSI11i_1	121.04	106.07			1.9784	1.9192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9784	1.9192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35636000	6224000	29412000	0	0	0	0	0	0	29499000	6224000	23275000	6137000	0	6137000	36098	4527	34127	222056;222057;222058	299440;299441;299442	299440			3	
MELPDYR	0	Unmodified	922.42185	0.42185282	355	O43676	NDUFB3	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	43.481	42.265	2	0.0072762	36113	160511_QHF_FH_JSI12i_2	88.029	75.598			0.43114	0.42489	116.64	2	1	Median	0.21441	0.18625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86695	0.9693	NaN	1	0	Median	411260000	335140000	76123000	281430000	259240000	22197000	0	0	0	0	0	0	129830000	75904000	53926000	36099	355	34128	222059;222060	299443;299444;299445	299443			3	
MELQEIQLK	1	Unmodified	1130.6005	0.60054547	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.79	3.19	4	6	3				1			4	4	3	3	61.149	59.6	2	2.6249E-06	51100	160511_QHF_FH_JSI12i_2	125.82	0			1.1043	1.1049	44.713	14	6	Median	1.0848	0.87117	57.5	4	2	Median	0.82288	0.98342	26.137	4	2	Median	1.1536	1.1339	62.679	3	1	Median	1.106	1.1859	16.008	3	1	Plateau	10169000000	4991400000	5177800000	1993600000	1019900000	973650000	2729600000	1412200000	1317300000	3017900000	1416000000	1601900000	2428100000	1143200000	1284900000	36100	858	34129	222061;222062;222063;222064;222065;222066;222067;222068;222069;222070;222071;222072;222073;222074	299446;299447;299448;299449;299450;299451;299452;299453;299454;299455;299456;299457;299458;299459;299460;299461;299462;299463;299464;299465;299466;299467;299468;299469;299470;299471;299472;299473	299450			28	
MELQEMQLK	1	Unmodified	1148.557	0.55696609	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.13	8	7					4			4	4	5	6	55.53	52.619	2	3.8499E-08	47053	160511_QHF_FH_JSI12i_1	146.81	0		+	0.97799	0.98311	15.379	19	2	Median	1.0545	0.86428	17.085	4	0	Median	0.77953	0.91933	13.111	4	1	Median	1.091	1.0626	17.252	5	1	Median	1.0198	1.1154	13.051	6	0	Median	5946700000	2753600000	3193100000	1206900000	525500000	681420000	1365800000	746410000	619340000	1823500000	768990000	1054500000	1550500000	712670000	837850000	36101	73;886	34130	222075;222076;222077;222078;222079;222080;222081;222082;222083;222084;222085;222086;222087;222088;222089;222090;222091;222092;222093	299474;299475;299476;299477;299478;299479;299480;299481;299482;299483;299484;299485;299486;299487;299488;299489;299490;299491;299492;299493;299494;299495;299496;299497;299498;299499;299500;299501;299502	299481			29	
MELQKGK	2	Acetyl (K);Acetyl (Protein N-term)	916.4688	0.46880301	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	1	1	0	1		By MS/MS			11	0				2							2			49.114	39.761	2	0.020938	16415	160513_QHF_FH_JSI10Kac_1	47.849	41.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36102	3028	34131	222094;222095	299503;299504	299503	2745		2	
MELQPPEASIAVVSIPR	0	Acetyl (Protein N-term);Oxidation (M)	1893.987	0.98699906	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	95.37	95.069	2	0.00011201	86323	160511_QHF_FH_JSI11i_1	79.633	70.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36103	895	34132	222096;222097;222098;222099;222100	299505;299506;299507;299508;299509	299505		456	5	
MELQPPEASIAVVSIPR	0	Acetyl (Protein N-term)	1877.9921	0.99208444	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	101.58	101.49	2;3	1.0704E-09	92238	160511_QHF_FH_JSI10i_1	107.34	99.828			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36104	895	34132	222101;222102;222103;222104;222105;222106;222107	299510;299511;299512;299513;299514;299515;299516	299515			7	
MELSAEYLR	0	Acetyl (Protein N-term)	1152.5485	0.5485099	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	79.981	79.552	1;2	5.924E-11	72362	160511_QHF_FH_JSI10i_1	175.38	128.31			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36105	4695	34133	222108;222109;222110;222111;222112;222113	299517;299518;299519;299520;299521;299522;299523;299524;299525;299526	299524			10	
MELSAEYLR	0	Acetyl (Protein N-term);Oxidation (M)	1168.5434	0.54342452	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	2	1	70.298	60.859	2	0.0013295	23900	160513_QHF_FH_JSI11Kac_2	69.423	52.038			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36106	4695	34133	222114;222115;222116;222117	299527;299528;299529;299530	299527		2517	4	
MELSAVGER	0	Acetyl (Protein N-term)	1032.491	0.49099502	4851	Q9HC52;O95503	CBX8;CBX6	Chromobox protein homolog 8;Chromobox protein homolog 6	yes	no	0	1	0	0		By MS/MS			1	0	1										1			56.459	56.065	2	0.0035541	50511	160511_QHF_FH_JSI10i_1	68.625	49.843			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36107	4851	34134	222118	299531	299531			1	
MELSDANLQTLTEYLK	1	Acetyl (Protein N-term)	1909.9343	0.93429479	1844	P55060	CSE1L	Exportin-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.59	102.49	2	4.7788E-209	93307	160511_QHF_FH_JSI10i_1	215.46	192.88			1.1388	1.1544	10.251	4	0	Linear	1.1759	0.95702	NaN	1	0	Median	0.81979	0.97187	NaN	1	0	Median	1.172	1.1345	NaN	1	0	Median	1.1065	1.166	NaN	1	0	Median	1932500000	920750000	1011800000	303800000	133400000	170400000	478990000	257060000	221930000	538370000	245890000	292480000	611360000	284400000	326960000	36108	1844	34135	222119;222120;222121;222122	299532;299533;299534;299535;299536;299537	299535			6	
MELSESVQK	1	Acetyl (Protein N-term)	1091.5169	0.51687542	5237	Q9UBI1	COMMD3	COMM domain-containing protein 3	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	50.695	50.197	2	0.0013944	45531	160511_QHF_FH_JSI12i_1	65.465	53.954			0.73278	0.86503	105.74	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73278	0.86503	NaN	1	0	Median	1.0268	0.98515	NaN	1	0	Median	0.14938	0.14837	NaN	1	1	Median	84449000	48042000	36407000	0	0	0	36348000	18634000	17714000	32217000	16090000	16128000	15884000	13318000	2565500	36109	5237	34136	222123;222124;222125	299538;299539;299540	299539			1	
MELVQVLK	1	Acetyl (Protein N-term)	1000.5627	0.5627034	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.32	101.22	2	4.2033E-05	91917	160511_QHF_FH_JSI10i_1	95.62	55.517			1.0101	0.97911	9.5323	4	0	Median	1.087	0.90181	NaN	1	0	Median	0.83166	0.96426	NaN	1	0	Median	1.1644	1.1318	NaN	1	0	Median	0.93854	0.99418	NaN	1	0	Median	434870000	212530000	222340000	141890000	61439000	80448000	101860000	61293000	40571000	82412000	40273000	42139000	108710000	49530000	59178000	36110	5319	34137	222126;222127;222128;222129	299541;299542;299543;299544;299545;299546;299547;299548	299546			8	
MEMDDFNEVFQILLNTVK	1	Unmodified	2185.0435	0.043527659	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.12	94.67	3	6.2245E-08	56956	160513_QHF_FH_JSI10Kac_6	105.5	96.644			0.96356	0.96518	1.2975	2	0	Median	1.1345	0.97407	NaN	1	0	Median	0.81841	0.95636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95467000	51745000	43723000	33809000	13342000	20467000	61658000	38403000	23255000	0	0	0	0	0	0	36111	432	34138	222130;222131	299549;299550	299550			2	
MEMINVSGYVAQEK	1	Unmodified	1597.748	0.74801434	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	7	8								4	3	4	4	68.628	67.854	2;3	1.1177E-10	61788	160511_QHF_FH_JSI12i_1	154.36	131.72			1.4879	1.5914	45.845	14	5	Median	3.5553	3.0977	55.779	4	1	Median	1.3583	1.5906	25.418	3	2	Plateau	1.814	1.7819	46.111	3	1	Median	1.3424	1.4276	16.678	4	1	Median	1288800000	474650000	814160000	225420000	53924000	171500000	346360000	162970000	183390000	378380000	118850000	259530000	338650000	138900000	199740000	36112	1459	34139	222132;222133;222134;222135;222136;222137;222138;222139;222140;222141;222142;222143;222144;222145;222146	299551;299552;299553;299554;299555;299556;299557;299558;299559;299560;299561;299562;299563;299564;299565;299566;299567;299568;299569	299558			19	
MEMPLPPDDQELR	0	Acetyl (Protein N-term)	1611.7273	0.7272789	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		85.545	84.949	2	9.5363E-06	75496	160511_QHF_FH_JSI9i_1	81.865	75.625			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36113	3432	34140	222147;222148	299570;299571	299571			2	
MEMTEMTGVSLK	1	Acetyl (Protein N-term)	1397.6241	0.62405938	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		86.197	85.741	2	0.00020868	77902	160511_QHF_FH_JSI10i_1	79.07	69.887			0.20998	0.20911	171.22	5	5	Median	0.91243	0.73917	207.02	2	2	Median	0.79538	0.89419	205.49	2	2	Median	0.11382	0.11064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89118000	51490000	37628000	26441000	12714000	13726000	45119000	23177000	21942000	17558000	15598000	1960100	0	0	0	36114	4202	34141	222149;222150;222151;222152;222153	299572;299573;299574;299575;299576	299574			5	
MENAHTK	1	Acetyl (Protein N-term)	871.3858	0.38580166	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	1	2	7.7093	7.2931	2	0.00144	5198	160511_QHF_FH_JSI12i_1	108.46	104.61			0.62627	0.61972	249.26	7	7	Median	3.4777	2.8508	438.3	2	2	Median	5.6238	6.6642	293.49	2	2	Median	0.62627	0.61972	NaN	1	1	Median	0.37547	0.40192	11.124	2	2	Median	2856500000	1659000000	1197500000	907570000	390970000	516600000	982170000	475290000	506880000	445590000	361130000	84453000	521180000	431610000	89569000	36115	1103	34142	222154;222155;222156;222157;222158;222159;222160	299577;299578;299579;299580;299581;299582;299583;299584	299579			8	
MENFQKVEK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1251.5805	0.58053831	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.495				4	3						2	3	2	50.25	40.951	2	4.602E-08	16964	160513_QHF_FH_JSI12Kacf_1	105.78	83.548			0.87944	0.92861	13.264	6	0	Median	NaN	NaN	NaN	0	0	Median	0.80753	0.92861	3.2261	2	0	Median	0.87944	0.8382	0.42249	2	0	Median	1.0607	1.1152	5.651	2	0	Median	63471000	31718000	31753000	0	0	0	17633000	9290700	8341800	15998000	8012200	7985700	29841000	14415000	15425000	36116	1252	34143	222161;222162;222163;222164;222165;222166;222167	299585;299586;299587;299588;299589;299590;299591;299592;299593;299594;299595;299596	299590	1149	884	12	
MENFQKVEK	2	Acetyl (K);Acetyl (Protein N-term)	1235.5856	0.58562368	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				4	4						2	3	3	69.212	59.768	2	4.2109E-12	23918	160513_QHF_FH_JSI10Kac_1	112.84	91.378			0.91069	0.95417	15.159	5	0	Median	NaN	NaN	NaN	0	0	Median	0.79696	0.93041	3.567	2	0	Median	0.91069	0.87081	NaN	1	0	Median	1.1171	1.1751	9.6644	2	0	Median	36977000	18698000	18279000	0	0	0	17715000	9867100	7848000	2138600	1019600	1119000	17123000	7811000	9311900	36117	1252	34143	222168;222169;222170;222171;222172;222173;222174;222175	299597;299598;299599;299600;299601;299602;299603;299604;299605;299606	299604	1149		10	
MENGQSTAAK	1	Unmodified	1035.4655	0.46550855	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22	4	1	2			3				2	3	2	3	5.1492	2.6886	2	8.0538E-11	2649	160511_QHF_FH_JSI11i_1	142.92	110.08			1.0526	0.92197	30.968	10	0	Median	1.1141	0.92197	1.4433	2	0	Median	1.2341	1.4689	43.697	3	0	Median	0.97067	0.93977	5.8729	2	0	Median	0.77219	0.83593	27.346	3	0	Median	1716700000	866560000	850120000	351000000	153990000	197010000	503970000	294730000	209230000	382040000	169090000	212950000	479680000	248750000	230930000	36118	5315	34144	222176;222177;222178;222179;222180;222181;222182;222183;222184;222185	299607;299608;299609;299610;299611;299612;299613;299614;299615;299616;299617;299618;299619;299620;299621	299607			15	
MENGQSTAAK	1	Oxidation (M)	1051.4604	0.46042317	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				5.1617	4.5857	2	0.025673	2496	160511_QHF_FH_JSI9i_1	62.823	37.9			0.68024	0.57805	NaN	1	1	Median	0.68024	0.57805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27746000	17720000	10026000	27746000	17720000	10026000	0	0	0	0	0	0	0	0	0	36119	5315	34144	222186	299622	299622			1	
MENGVLGNALEGVHVEEEEGEK	1	Unmodified	2368.0853	0.085269132	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	69.02	68.502	3	1.2492E-18	59092	160511_QHF_FH_JSI12i_3	149.74	128.53			1.4094	1.3579	21.966	5	0	Median	1.5618	1.3579	NaN	1	0	Median	1.4094	1.7307	NaN	1	0	Median	1.3407	1.2927	22.822	2	0	Median	1.0004	1.0212	NaN	1	0	Median	321110000	146630000	174490000	58063000	21480000	36583000	45722000	18846000	26876000	107310000	53486000	53829000	110010000	52813000	57202000	36120	1649	34145	222187;222188;222189;222190;222191	299623;299624;299625;299626;299627;299628;299629;299630	299630			8	
MENGYTYEDYK	1	Acetyl (Protein N-term)	1453.5708	0.57076148	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	52.997	52.07	2	2.2196E-05	46388	160511_QHF_FH_JSI9i_1	70.056	68.116			1.0018	0.92474	22.4	2	0	Median	0.95951	0.78928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.046	1.0834	NaN	1	0	Median	190140000	89274000	100870000	71582000	34922000	36660000	0	0	0	0	0	0	118560000	54352000	64209000	36121	771	34146	222192;222193	299631;299632	299632			1	
MENGYTYEDYK	1	Acetyl (Protein N-term);Oxidation (M)	1469.5657	0.5656761	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	1	1	0				By MS/MS	11	0				1									1	48.155	39.007	2	0.02476	16209	160513_QHF_FH_JSI12Kacf_1	36.525	31.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36122	771	34146	222194	299633	299633			1	
MENHKSNNK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1200.5193	0.51933503	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	1	1	1	1			By MS/MS		13	0						1						1		5.139	-2.1818	2	0.0013545	1657	160513_QHF_FH_JSI11Kac_3	48.796	43.43			0.23819	0.24083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23819	0.24083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5679000	4518300	1160700	0	0	0	0	0	0	5679000	4518300	1160700	0	0	0	36123	4617	34147	222195	299634	299634	3200	2502	1	
MENQALQEAK	1	Unmodified	1160.5496	0.54957253	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.394	17.039	2	0.00070522	14632	160511_QHF_FH_JSI12i_1	79.07	62.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36124	5719	34148	222196;222197	299635;299636	299635			2	
MENQSENNDIDEVIIPTAPLYK	1	Unmodified	2532.2054	0.20538427	4319	Q99816	TSG101	Tumor susceptibility gene 101 protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		87.769	87.409	3	0.00016973	79588	160511_QHF_FH_JSI11i_1	50.055	45.402			0.78228	0.73768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78228	0.73768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23524000	10673000	12851000	0	0	0	0	0	0	23524000	10673000	12851000	0	0	0	36125	4319	34149	222198	299637	299637			1	
MENQVLTPHVYWAQR	0	Acetyl (Protein N-term)	1912.9254	0.92540185	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.8	2	8	1						3	2	4	5	3	79.82	77.411	2;3	2.7561E-72	68293	160511_QHF_FH_JSI12i_2	276.47	254.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36126	5177	34150	222199;222200;222201;222202;222203;222204;222205;222206;222207;222208;222209;222210;222211;222212	299638;299639;299640;299641;299642;299643;299644;299645;299646;299647;299648;299649;299650;299651;299652;299653;299654;299655;299656	299642			19	
MENQVLTPHVYWAQR	0	Acetyl (Protein N-term);Oxidation (M)	1928.9203	0.92031648	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	1	1	0	By MS/MS	By MS/MS			8.75	6.76		2						1	1	3	1			76.357	65.85	2	5.1376E-16	35428	160513_QHF_FH_JSI9Kac_6	131.17	115.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36127	5177	34150	222213;222214;222215;222216	299657;299658;299659;299660	299660		2597	4	
MENTENSVDSK	1	Acetyl (Protein N-term)	1294.5347	0.53471033	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				26.231	24.973	2	0.00034771	21558	160511_QHF_FH_JSI9i_1	70.808	66.196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36128	1539	34151	222217	299661	299661			1	
MENTENSVDSKSIK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1680.7512	0.75124504	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	1	1	1	1				By MS/MS	11	0				1									1	43.883	34.937	2	0.00014115	14628	160513_QHF_FH_JSI12Kacf_1	55.452	48.793			0.77722	0.82828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77722	0.82828	NaN	1	0	Median	2008500	1208400	800080	0	0	0	0	0	0	0	0	0	2008500	1208400	800080	36129	1539	34152	222218	299662	299662	1552	1208	1	
MEPAAGSSMEPSADWLATAAAR	0	Acetyl (Protein N-term)	2261.0093	0.0092674174	1547	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	98.094	97.932	2;3	1.2801E-16	88813	160511_QHF_FH_JSI11i_1	170.49	165.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36130	1547	34153	222219;222220;222221;222222;222223;222224;222225	299663;299664;299665;299666;299667;299668;299669;299670	299664			8	
MEPAASSQAAVEELR	0	Unmodified	1587.7563	0.75627084	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.603	46.945	2	2.7249E-06	42609	160511_QHF_FH_JSI12i_1	122.34	103.67			0.9421	0.98179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9421	0.98179	NaN	1	1	Median	48443000	27307000	21135000	0	0	0	0	0	0	0	0	0	48443000	27307000	21135000	36131	3982	34154	222226	299671	299671			1	
MEPAEQPSELVSAEGR	0	Acetyl (Protein N-term)	1770.8094	0.80942862	1603	P47224	RABIF	Guanine nucleotide exchange factor MSS4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.462	65.861	2	1.8951E-05	59840	160511_QHF_FH_JSI12i_1	102.87	96.769			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36132	1603	34155	222227;222228;222229;222230	299672;299673;299674;299675	299673			4	
MEPATAPR	0	Unmodified	871.42219	0.42218717	1564	P43378	PTPN9	Tyrosine-protein phosphatase non-receptor type 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		16.454	16.454	3	0.024448	13621	160511_QHF_FH_JSI11i_3	24.894	1.8516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36133	1564	34156	222231	299676	299676			1	
MEPAVGGPGPLIVNNK	1	Acetyl (Protein N-term)	1633.8498	0.84977729	2980	Q5VSL9	STRIP1	Striatin-interacting protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		79.486	78.975	2	1.6692E-05	71907	160511_QHF_FH_JSI11i_1	81.017	61.774			0.7083	0.66003	11.367	2	1	Median	0.89141	0.71527	NaN	1	0	Median	0.5628	0.60906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23902000	14779000	9122700	13071000	7351800	5719100	10831000	7427000	3403600	0	0	0	0	0	0	36134	2980	34157	222232;222233;222234	299677;299678;299679	299677			3	
MEPAVSEPMRDQVAR	0	Acetyl (Protein N-term);Oxidation (M)	1772.8186	0.81855352	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.8	40.164	2	0.0034887	36200	160511_QHF_FH_JSI11i_1	62.303	48.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36135	2701	34158	222235;222236;222237;222238	299680;299681;299682;299683	299680		2105	4	
MEPAVSEPMRDQVAR	0	Acetyl (Protein N-term)	1756.8236	0.8236389	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.939	51.443	2	7.2026E-08	46371	160511_QHF_FH_JSI10i_1	144.1	110.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36136	2701	34158	222239;222240;222241	299684;299685;299686	299686			3	
MEPEAPR	0	Acetyl (Protein N-term)	870.39055	0.39055269	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		27.334	27.143	1	0.0066277	24044	160511_QHF_FH_JSI11i_1	53.71	43.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36137	1616	34159	222242	299687	299687			1	
MEPEQMLEGQTQVAENPHSEYGLTDNVER	0	Acetyl (Protein N-term)	3372.4874	0.48744914	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.124	83.663	3	6.581E-16	76077	160511_QHF_FH_JSI12i_1	77.522	76.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110720000	99413000	11303000	0	0	0	0	0	0	0	0	0	110720000	99413000	11303000	36138	4576	34160	222243;222244;222245;222246	299688;299689;299690;299691;299692;299693;299694;299695	299690			8	
MEPGPDGPAASGPAAIR	0	Acetyl (Protein N-term)	1634.7723	0.77225526	1163	P19623	SRM	Spermidine synthase	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				58.514	57.378	2	1.8615E-05	50971	160511_QHF_FH_JSI9i_1	80.469	64.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36139	1163	34161	222247	299696	299696			1	
MEPITKISHIPASR	1	Acetyl (K)	1620.8658	0.86576171	4918	Q9NQC1	JADE2	Protein Jade-2	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	1	2	1	2	67.313	57.701	3	2.107E-11	31218	160513_QHF_FH_JSI11Kac_6	124.09	114.25			0.9651	1.0186	19.687	6	0	Median	1.0278	0.86841	NaN	1	0	Median	0.81988	0.97915	10.441	2	0	Median	1.1268	1.0611	NaN	1	0	Median	1.1164	1.2198	30.345	2	0	Median	308500000	147620000	160880000	57193000	27337000	29856000	105510000	56114000	49398000	79453000	31066000	48387000	66344000	33105000	33240000	36140	4918	34162	222248;222249;222250;222251;222252;222253	299697;299698;299699;299700;299701	299697	3267		5	
MEPITKVSHIPSSR	1	Acetyl (K)	1622.845	0.84502627	3056	Q6IE81	JADE1	Protein Jade-1	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	59.149	49.263	3	0.0017758	25729	160513_QHF_FH_JSI12Kac_6	65.092	46.361			13.02	14.097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.02	14.097	NaN	1	1	Median	8609400	574960	8034400	0	0	0	0	0	0	0	0	0	8609400	574960	8034400	36141	3056	34163	222254	299702	299702	2748		1	
MEPLAAYPLK	1	Acetyl (Protein N-term)	1173.6104	0.61038187	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.256	84.797	2	5.3615E-05	77259	160511_QHF_FH_JSI11i_1	62.2	42.413			0.96494	0.99352	1.9425	4	0	Median	1.2146	1.0021	NaN	1	0	Median	0.87738	1.0157	NaN	1	0	Median	1.027	0.98506	NaN	1	0	Median	0.90665	0.97162	NaN	1	0	Median	413080000	215090000	197990000	99741000	44918000	54823000	100250000	60048000	40206000	105680000	53618000	52060000	107400000	56503000	50902000	36142	3733	34164	222255;222256;222257;222258	299703;299704;299705;299706;299707;299708;299709;299710;299711	299704			9	
MEPLNNLQVAVK	1	Unmodified	1354.7279	0.72787125	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.43	4	1	1				1			2	2	1	2	63.776	63.156	2	9.9323E-06	57351	160511_QHF_FH_JSI10i_1	118.71	112.93			0.93797	0.92705	151.51	6	0	Median	1.071	0.89015	6.8626	2	0	Median	0.8803	1.0364	NaN	1	0	Median	1.0094	0.98607	NaN	1	0	Median	0.14151	0.14586	260.42	2	0	Median	1889500000	1422000000	467460000	225690000	104500000	121190000	214760000	114220000	100540000	221220000	116390000	104830000	1227800000	1086900000	140900000	36143	2046;2296	34165	222259;222260;222261;222262;222263;222264;222265	299712;299713;299714;299715;299716;299717;299718;299719;299720;299721;299722	299719			11	
MEPNDSTSTAVEEPDSLEVLVK	1	Acetyl (Protein N-term)	2431.1312	0.13121627	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	95.714	95.492	2;3	0.00090061	86691	160511_QHF_FH_JSI12i_1	42.612	40.622			1.1493	1.2627	14.746	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2243	1.3919	NaN	1	0	Median	1.0783	1.0424	NaN	1	0	Median	1.0789	1.1455	NaN	1	0	Median	65450000	27285000	38165000	0	0	0	24567000	13031000	11536000	17380000	6088500	11291000	23503000	8165300	15338000	36144	1585	34166	222266;222267;222268;222269;222270	299723;299724;299725;299726	299725			4	
MEPNDSTSTAVEEPDSLEVLVK	1	Oxidation (M)	2405.1156	0.11556621	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				96.15	95.537	3	0.0070948	84691	160511_QHF_FH_JSI9i_1	34.009	29.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36145	1585	34166	222271	299727	299727		1245	1	
MEPPNLYPVK	1	Acetyl (Protein N-term)	1228.6162	0.61619553	3055	Q6ICB0	DESI1	Desumoylating isopeptidase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		74.739	74.268	2	0.0021454	66062	160511_QHF_FH_JSI9i_1	60.973	53.033			0.1519	0.1465	84.049	3	3	Median	0.096699	0.078945	NaN	1	1	Median	0.36722	0.41638	NaN	1	1	Median	0.1519	0.1465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58160000	48663000	9496500	16035000	14374000	1661300	22521000	16633000	5888000	19603000	17656000	1947200	0	0	0	36146	3055	34167	222272;222273;222274	299728;299729;299730	299730			3	
MEPPRGPPANGAEPSR	0	Acetyl (Protein N-term)	1703.805	0.80495237	968	P10398	ARAF	Serine/threonine-protein kinase A-Raf	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	36.374	35.782	2	0.0035851	32353	160511_QHF_FH_JSI12i_1	51.841	37.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36147	968	34168	222275	299731	299731			1	
MEPPYSLTAHYDEFQEVK	1	Acetyl (Protein N-term)	2224.9987	0.99868596	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	86.201	85.773	2	1.1708E-07	76406	160511_QHF_FH_JSI9i_1	95.651	82.67			1.0524	1.059	9.0072	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0285	0.99363	NaN	1	0	Median	1.0769	1.1286	NaN	1	0	Median	40489000	17863000	22626000	0	0	0	0	0	0	19254000	9457200	9797200	21234000	8405700	12829000	36148	714	34169	222276;222277;222278;222279	299732;299733;299734;299735;299736;299737;299738	299738			7	
MEPSSLELPADTVQR	0	Acetyl (Protein N-term);Oxidation (M)	1729.8193	0.81926503	2757	Q16719	KYNU	Kynureninase	yes	yes	0	1	1	0		By MS/MS			11	0				1							1			74.219	65.65	2	0.0034878	25811	160513_QHF_FH_JSI10Kac_1	53.528	42.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36149	2757	34170	222280	299739	299739		2130	1	
MEPTAPSLTEEDLTEVKK	2	Acetyl (Protein N-term)	2059.0031	0.003102632	749	O95999	BCL10	B-cell lymphoma/leukemia 10	yes	yes	0	1	0	1	By MS/MS				1	0	2									2				73.072	72.142	2	4.0086E-11	64178	160511_QHF_FH_JSI9i_1	103.85	90.716			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15316000	0	15316000	15316000	0	15316000	0	0	0	0	0	0	0	0	0	36150	749	34171	222281;222282	299740;299741	299741			2	
MEPWDYPAK	1	Unmodified	1135.5008	0.50083142	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		50.773	50.358	2	0.00030513	45539	160511_QHF_FH_JSI11i_1	83.206	63.503			0.96261	1.0058	42.793	2	1	Median	NaN	NaN	NaN	0	0	Median	0.64835	0.74321	NaN	1	1	Median	1.4292	1.3613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64706000	32766000	31940000	0	0	0	26666000	15431000	11235000	38040000	17334000	20705000	0	0	0	36151	2113	34172	222283;222284;222285	299742;299743;299744	299742			3	
MEQEPQNGEPAEIK	1	Acetyl (Protein N-term)	1640.7352	0.73520105	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.984	43.32	2	8.996E-05	39129	160511_QHF_FH_JSI11i_1	69.721	57.144			0.98148	0.94988	3.2276	4	0	Median	1.1184	0.90926	NaN	1	0	Median	0.80945	0.94275	NaN	1	0	Median	1.0277	0.98231	NaN	1	0	Median	0.93736	0.95706	NaN	1	0	Median	152770000	76680000	76090000	35160000	13599000	21561000	50936000	26200000	24735000	37800000	18724000	19076000	28874000	18156000	10718000	36152	3494	34173	222286;222287;222288;222289	299745;299746;299747;299748;299749;299750;299751	299746			7	
MEQLSSANTR	0	Acetyl (Protein N-term)	1177.5397	0.53973612	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	2	1	2	41.175	38.824	2	4.4864E-05	34688	160511_QHF_FH_JSI9i_1	95.642	86.054			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36153	1363	34174	222290;222291;222292;222293;222294;222295	299752;299753;299754;299755;299756;299757;299758;299759;299760	299758			9	
MEQQQLEEQK	1	Unmodified	1289.5922	0.59216562	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.284	14.825	2	4.3156E-14	12406	160511_QHF_FH_JSI10i_1	160.59	118.48			0.98772	0.95827	24.919	4	0	Median	1.1451	0.92802	NaN	1	0	Median	0.85197	0.98952	NaN	1	0	Median	0.74432	0.71236	NaN	1	0	Median	1.2294	1.307	NaN	1	0	Median	227120000	119690000	107420000	48913000	22221000	26692000	69736000	33184000	36552000	47494000	34812000	12683000	60974000	29477000	31497000	36154	4976	34175	222296;222297;222298;222299	299761;299762;299763;299764;299765	299764			5	
MEQVNELK	1	Acetyl (Protein N-term)	1031.4957	0.49574604	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	4.97	5			4						1	2	4	2	54.925	50.993	1;2	2.7746E-07	46085	160511_QHF_FH_JSI10i_1	129.4	112.01			0.96387	1.0225	14.216	8	0	Median	1.1708	0.96411	NaN	1	0	Median	0.90228	1.0493	4.4822	2	0	Median	0.98713	0.95694	25.927	3	0	Median	0.96387	1.0331	0.61813	2	0	Median	2790900000	1375300000	1415600000	577990000	229650000	348340000	743780000	417810000	325970000	792350000	377170000	415180000	676800000	350640000	326150000	36155	1386	34176	222300;222301;222302;222303;222304;222305;222306;222307;222308	299766;299767;299768;299769;299770;299771;299772;299773;299774;299775;299776;299777;299778;299779;299780	299772			15	
MEQYANNLEELVEER	0	Unmodified	1865.8465	0.84654241	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.75	0.433	1	3									1		3	78.256	77.436	2	1.7049E-06	70559	160511_QHF_FH_JSI12i_1	126.95	113.52			1.1129	1.1734	36.033	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1129	1.1734	36.033	2	2	Median	31282000	16437000	14845000	0	0	0	4877300	4877300	0	0	0	0	26405000	11560000	14845000	36156	1088	34177	222309;222310;222311;222312	299781;299782;299783;299784	299783			4	
MERDILVEVNHPFIVK	1	Unmodified	1938.0397	0.03970333	1755	P51812;Q9UK32	RPS6KA3;RPS6KA6	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6	yes	no	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	70.829	70.244	4	6.0404E-06	60743	160511_QHF_FH_JSI12i_3	109.35	93.534			1.0228	0.99596	11.722	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0228	1.1758	NaN	1	0	Median	1.1307	1.0655	NaN	1	0	Median	0.93552	0.93097	NaN	1	0	Median	130490000	56696000	73796000	0	0	0	12143000	5079800	7063300	57833000	24930000	32902000	60516000	26686000	33831000	36157	1755	34178	222313;222314;222315	299785;299786;299787;299788;299789	299788			5	
MEREDSSEEEEEEIDDEEIER	0	Unmodified	2626.0348	0.034809284	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.946	39.504	3	3.6366E-14	35474	160511_QHF_FH_JSI10i_1	120.75	98.737			1.894	1.9675	60.262	3	1	Median	NaN	NaN	NaN	0	0	Median	3.5839	4.0564	NaN	1	1	Median	1.2762	1.226	NaN	1	0	Median	1.894	1.9675	NaN	1	0	Median	130510000	42036000	88476000	0	0	0	30917000	4950300	25967000	46339000	19250000	27089000	53256000	17835000	35421000	36158	1847	34179	222316;222317;222318	299790;299791;299792;299793	299793			4	
MERPQPDSMPQDLSEALK	1	Acetyl (Protein N-term)	2112.982	0.98199003	934	P09601	HMOX1	Heme oxygenase 1	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	3										1	2		76.36	76.088	2	2.5512E-07	69241	160511_QHF_FH_JSI11i_1	92.935	70.402			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36159	934	34180	222319;222320;222321	299794;299795;299796	299795			3	
MESAGLEQLLR	0	Acetyl (Protein N-term)	1287.6493	0.64928657	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	96.561	96.323	2	2.2234E-25	85347	160511_QHF_FH_JSI9i_1	226.59	203.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36160	3741	34181	222322;222323;222324;222325	299797;299798;299799;299800;299801;299802;299803	299803			7	
MESAIAEGGASR	0	Acetyl (Protein N-term);Oxidation (M)	1235.5452	0.54521543	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	1	1	0			By MS/MS	By MS/MS	11.5	0.5				2	2							2	2	31.176	22.832	2	0.00056947	11330	160513_QHF_FH_JSI12Kac_2	66.595	60.561			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36161	2084	34182	222326;222327;222328;222329	299804;299805;299806;299807	299807		1744	4	
MESAIAEGGASR	0	Acetyl (Protein N-term)	1219.5503	0.55030081	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	44.972	44.209	2	6.8623E-06	39703	160511_QHF_FH_JSI10i_1	115.41	106.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36162	2084	34182	222330;222331;222332	299808;299809;299810	299809			3	
MESALDQLK	1	Unmodified	1033.5114	0.51139611	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.33	5.19	3	4					2			2		4	3	45.709	41.932	2	0.00045216	38118	160511_QHF_FH_JSI12i_1	80.438	46.642			0.93108	0.91691	91.51	7	4	Median	3.4273	2.834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93108	0.90784	105.78	3	2	Median	0.86774	0.91691	94.81	3	1	Median	1940200000	977320000	962830000	366190000	154700000	211490000	0	0	0	821560000	399310000	422260000	752400000	423310000	329090000	36163	1471	34183	222333;222334;222335;222336;222337;222338;222339;222340;222341	299811;299812;299813;299814;299815;299816;299817;299818;299819	299813			8	
MESDFYLR	0	Acetyl (Protein N-term)	1101.4801	0.48009598	1952	P61326	MAGOH	Protein mago nashi homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.258	72.755	2	0.0022556	66185	160511_QHF_FH_JSI12i_1	67.981	65.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36164	1952	34184	222342;222343;222344;222345	299820;299821;299822;299823	299821			4	
MESDFYLR	0	Acetyl (Protein N-term);Oxidation (M)	1117.475	0.4750106	1952	P61326	MAGOH	Protein mago nashi homolog	yes	yes	0	1	1	0			By MS/MS		13	0						1						1		65.717	56.11	2	0.0060503	29020	160513_QHF_FH_JSI11Kac_3	53.166	48.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36165	1952	34184	222346	299824	299824		1622	1	
MESGAYGAAK	1	Acetyl (Protein N-term)	1025.4488	0.44879585	371	O43760	SYNGR2	Synaptogyrin-2	yes	yes	0	1	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4	4.44	4	1		2						2	1	2	2	31.538	28.575	2	0.00032025	25870	160511_QHF_FH_JSI12i_1	47.869	34.29			0.97652	0.97896	29.077	7	0	Median	1.1646	0.98163	13.967	2	0	Median	0.79644	0.9212	NaN	1	0	Median	1.2629	1.231	32.4	2	0	Median	0.72771	0.75805	38.079	2	0	Median	295920000	142090000	153830000	66948000	30000000	36948000	86358000	42602000	43756000	67701000	25319000	42382000	74912000	44165000	30747000	36166	371	34185	222347;222348;222349;222350;222351;222352;222353	299825;299826;299827;299828;299829	299825			5	
MESGDEAAIER	0	Acetyl (Protein N-term)	1248.5292	0.52923102	3724	Q8TDP1	RNASEH2C	Ribonuclease H2 subunit C	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	38.948	38.343	2	0.00079621	34779	160511_QHF_FH_JSI12i_1	70.977	66.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36167	3724	34186	222354	299830	299830			1	
MESGFTSK	1	Acetyl (Protein N-term)	927.40078	0.40078303	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.743	37.13	2	0.001094	33571	160511_QHF_FH_JSI12i_1	64.265	45.534			1.0406	1.0303	6.9092	4	0	Median	1.2723	1.0614	NaN	1	0	Median	0.79621	0.909	NaN	1	0	Median	1.0738	1.0336	NaN	1	0	Median	1.0085	1.0271	NaN	1	0	Median	387400000	194520000	192880000	77958000	35787000	42171000	119120000	69181000	49934000	105390000	47811000	57583000	84936000	41741000	43196000	36168	1495	34187	222355;222356;222357;222358	299831;299832;299833;299834;299835	299832			4	
MESGFTSK	1	Acetyl (Protein N-term);Oxidation (M)	943.3957	0.39569765	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	1	1	0			By MS/MS		11.5	0.5				1	1							2		25.302	18.05	2	0.025242	8541	160513_QHF_FH_JSI11Kac_2	32.841	18.428			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	501050	0	501050	0	0	0	0	0	0	501050	0	501050	0	0	0	36169	1495	34187	222359;222360	299836;299837	299836			2	
MESGIEPSVDLETLDER	0	Unmodified	1918.883	0.8829875	5073	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	74.169	73.604	2	1.0653E-06	67022	160511_QHF_FH_JSI12i_1	124.07	107.15			1.0146	1.0606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0146	1.0606	NaN	1	0	Median	20224000	8001700	12222000	0	0	0	0	0	0	0	0	0	20224000	8001700	12222000	36170	5073	34188	222361	299838;299839	299839			2	
MESGKTASPK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1134.5227	0.52268908	2742	Q16594	TAF9	Transcription initiation factor TFIID subunit 9	yes	yes	1	1	1	1				By MS/MS	11	0				1									1	18.457	11.05	2	0.0024722	5684	160513_QHF_FH_JSI12Kacf_1	62.823	54.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36171	2742	34189	222362	299840	299840	2661	2123	1	
MESGKTASPK	2	Acetyl (K);Acetyl (Protein N-term)	1118.5278	0.52777445	2742	Q16594	TAF9	Transcription initiation factor TFIID subunit 9	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			32.68	24.079	2	0.0063025	10464	160513_QHF_FH_JSI10Kac_1	54.416	45.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36172	2742	34189	222363	299841	299841	2661		1	
MESGLSDVTK	1	Unmodified	1065.5012	0.50122535	3772	Q8WUY1	THEM6	Protein THEM6	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.477	27.209	2	0.0083154	23676	160511_QHF_FH_JSI9i_1	60.064	37.283			3.8678	3.2194	NaN	1	1	Median	3.8678	3.2194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	328940000	53781000	275160000	328940000	53781000	275160000	0	0	0	0	0	0	0	0	0	36173	3772	34190	222364	299842	299842			1	
MESGSTAASEEAR	0	Acetyl (Protein N-term)	1366.5671	0.56707309	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.166	23.619	2	1.0042E-06	20823	160511_QHF_FH_JSI10i_1	123.01	118.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36174	977	34191	222365;222366;222367;222368	299843;299844;299845;299846	299845			4	
MESGSTAASEEAR	0	Acetyl (Protein N-term);Oxidation (M)	1382.562	0.56198771	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	1	1	0		By MS/MS		By MS/MS	7.67	4.71	1			2							1		2	17.202	9.7314	2	4.8883E-06	20836	160511_QHF_FH_JSI12i_1	84.507	83.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36175	977	34191	222369;222370;222371	299847;299848;299849	299847		541	3	
MESMFSSPAEAALQR	0	Acetyl (Protein N-term)	1695.7596	0.75964166	4357	Q9BQC3	DPH2	Diphthamide biosynthesis protein 2	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		92.42	92.062	2	7.4212E-13	83813	160511_QHF_FH_JSI11i_1	114.86	101.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36176	4357	34192	222372	299850	299850			1	
MESNGEALK	1	Unmodified	977.4488	0.44879585	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.753	10.904	2	0.01476	8656	160511_QHF_FH_JSI9i_1	44.98	8.2794			1.4395	1.25	NaN	1	0	Median	1.4395	1.25	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4677300000	1749500000	2927700000	4677300000	1749500000	2927700000	0	0	0	0	0	0	0	0	0	36177	1088	34193	222373	299851	299851			1	
MESQEPTESSQNGK	1	Acetyl (Protein N-term)	1592.6624	0.66243003	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	22.893	20.009	2	1.8861E-40	17618	160511_QHF_FH_JSI10i_1	134.57	124.68			1.0839	1.0388	8.8382	6	0	Median	1.2449	0.99694	NaN	1	0	Median	1.0119	1.1448	10.066	2	0	Median	1.0839	1.0517	5.4369	2	0	Median	0.9037	0.95756	NaN	1	0	Median	899950000	432180000	467770000	253160000	108820000	144340000	206720000	107790000	98935000	231340000	110030000	121310000	208720000	105540000	103180000	36178	5370	34194	222374;222375;222376;222377;222378;222379;222380	299852;299853;299854;299855;299856;299857;299858;299859;299860;299861;299862	299857			11	
MESQEPTESSQNGK	1	Acetyl (Protein N-term);Oxidation (M)	1608.6573	0.65734466	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	16.726	16.266	2	8.4935E-08	8624	160511_QHF_FH_JSI12i_1	90.913	89.662			0.9034	0.91559	36.625	4	0	Median	0.77142	0.619	NaN	1	0	Median	1.1515	1.3735	NaN	1	0	Median	0.77457	0.74524	NaN	1	0	Median	1.0537	1.1249	NaN	1	0	Median	209100000	95134000	113970000	58919000	22680000	36239000	57956000	38133000	19823000	54868000	17439000	37429000	37356000	16882000	20474000	36179	5370	34194	222381;222382;222383;222384;222385;222386;222387;222388;222389	299863;299864;299865;299866;299867;299868;299869;299870;299871;299872	299866		2644	10	
MESQLQNDSK	1	Unmodified	1178.5238	0.52375171	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	11.311	10.873	2	1.7175E-06	8674	160511_QHF_FH_JSI10i_1	133.23	94.264			1.2632	1.201	53.458	7	7	Median	1.1128	0.90391	40.188	2	2	Median	1.0331	1.2069	104.01	2	2	Median	1.3158	1.2666	NaN	1	1	Median	0.86386	0.89141	55.003	2	2	Median	358620000	196490000	162130000	102590000	58063000	44529000	106280000	51964000	54317000	46215000	20257000	25958000	103540000	66209000	37327000	36180	4989	34195	222390;222391;222392;222393;222394;222395;222396	299873;299874;299875;299876;299877;299878;299879	299877			7	
MESQLQNDSKK	2	Unmodified	1306.6187	0.61871473	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	1	3	3	8.8696	8.4372	2;3	1.2158E-05	6090	160511_QHF_FH_JSI11i_2	113.93	92.478			1.289	1.2908	90.136	8	8	Median	1.2335	1.0653	23.382	2	2	Median	1.5058	1.8142	NaN	1	1	Median	0.41066	0.42324	148.41	3	3	Plateau	1.591	1.7794	41.634	2	2	Median	399570000	189350000	210220000	80853000	26324000	54530000	42980000	12934000	30046000	197070000	116210000	80864000	78667000	33891000	44776000	36181	4989	34196	222397;222398;222399;222400;222401;222402;222403;222404;222405	299880;299881;299882;299883;299884;299885;299886;299887;299888	299886			9	
MESQLSASKPTGGLPETAR	1	Unmodified	1958.9731	0.97313991	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	38.647	38.265	3	2.0641E-05	33609	160511_QHF_FH_JSI10i_2	78.794	48.661			1.3583	1.2952	15.792	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77818	0.94618	NaN	1	0	Median	1.3583	1.2952	NaN	1	0	Median	1.1342	1.1402	NaN	1	0	Median	170870000	93620000	77246000	0	0	0	36436000	21102000	15334000	82017000	40065000	41952000	52412000	32453000	19959000	36182	5458	34197	222406;222407;222408	299889;299890;299891;299892;299893;299894	299892			6	
MESRDPAQPMSPGEATQSGARPADR	0	Acetyl (Protein N-term)	2683.2079	0.20786066	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	1	0	2		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.571	37.159	3	4.7556E-09	33630	160511_QHF_FH_JSI12i_1	89.402	81.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36183	4361	34198	222409;222410;222411	299895;299896;299897	299896			3	
MESVFNHAIR	0	Unmodified	1202.5866	0.58662674	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	38.192	37.693	2;3	1.8448E-11	31946	160511_QHF_FH_JSI12i_3	121.5	100.63			0.93512	0.93968	27.347	5	2	Median	NaN	NaN	NaN	0	0	Median	0.93609	1.1288	NaN	1	1	Median	0.93696	0.88255	12.7	2	0	Median	0.67444	0.7188	37.895	2	1	Median	390890000	214820000	176070000	0	0	0	52376000	29311000	23065000	165200000	81683000	83521000	173310000	103830000	69483000	36184	3229	34199	222412;222413;222414;222415;222416;222417	299898;299899;299900;299901;299902;299903;299904	299904			7	
MESYDVIANQPVVIDNGSGVIK	1	Acetyl (Protein N-term)	2389.1835	0.18352661	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	100.2	100.08	2;3	1.0645E-24	90813	160511_QHF_FH_JSI11i_1	181.26	173.28			1.0497	1.078	6.7765	5	0	Median	1.3143	1.0595	2.4536	2	0	Median	1.0064	1.1641	5.9482	2	0	Median	NaN	NaN	NaN	0	0	Median	1.022	1.0233	NaN	1	0	Median	584450000	288370000	296080000	311980000	140950000	171030000	232120000	120650000	111470000	15160000	15160000	0	25192000	11616000	13576000	36185	1941	34200	222418;222419;222420;222421;222422;222423	299905;299906;299907;299908;299909;299910;299911;299912;299913;299914	299905			10	
MESYHKPDQQK	2	Acetyl (Protein N-term)	1431.6453	0.64526383	1322	P29401	TKT	Transketolase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.39	5	11	8	10				4	3		7	7	10	12	16.404	14.456	2;3	5.5268E-19	11927	160511_QHF_FH_JSI12i_2	82.287	46.343			1.0267	1.0565	70.937	29	4	Median	1.4163	1.1373	26.838	6	0	Median	0.99532	1.1717	23.449	7	0	Median	1.05	1.0431	81.207	7	2	Median	0.90787	0.90944	106.52	9	2	Median	16364000000	7624900000	8738800000	3530000000	1553200000	1976800000	3974000000	1987700000	1986400000	4478300000	1903500000	2574800000	4381300000	2180600000	2200800000	36186	1322	34201	222424;222425;222426;222427;222428;222429;222430;222431;222432;222433;222434;222435;222436;222437;222438;222439;222440;222441;222442;222443;222444;222445;222446;222447;222448;222449;222450;222451;222452;222453;222454;222455;222456;222457;222458;222459	299915;299916;299917;299918;299919;299920;299921;299922;299923;299924;299925;299926;299927;299928;299929;299930;299931;299932;299933;299934;299935;299936;299937;299938;299939;299940;299941;299942;299943;299944;299945;299946;299947;299948;299949;299950;299951;299952;299953;299954;299955;299956;299957;299958;299959;299960;299961;299962;299963;299964;299965;299966;299967;299968;299969;299970;299971;299972;299973;299974;299975;299976;299977;299978	299925			64	
MESYHKPDQQK	2	Acetyl (Protein N-term);Oxidation (M)	1447.6402	0.64017845	1322	P29401	TKT	Transketolase	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.39	13	17	1				4	1		8	8	12	8	11.629	10.005	2;3	9.1322E-06	5871	160511_QHF_FH_JSI12i_2	75.378	59.807			0.99521	1.0271	124.87	33	11	Median	1.1701	0.99594	170.21	7	3	Median	0.89184	1.0735	75.437	7	1	Median	0.90066	0.88272	167.21	11	7	Median	0.96045	1.057	31.794	8	0	Median	4901300000	2288400000	2612900000	802590000	342460000	460140000	973890000	588040000	385850000	2053900000	868250000	1185600000	1071000000	489650000	581340000	36187	1322	34201	222460;222461;222462;222463;222464;222465;222466;222467;222468;222469;222470;222471;222472;222473;222474;222475;222476;222477;222478;222479;222480;222481;222482;222483;222484;222485;222486;222487;222488;222489;222490;222491;222492;222493;222494;222495	299979;299980;299981;299982;299983;299984;299985;299986;299987;299988;299989;299990;299991;299992;299993;299994;299995;299996;299997;299998;299999;300000;300001;300002;300003;300004;300005;300006;300007;300008;300009;300010;300011;300012;300013;300014;300015;300016;300017;300018;300019;300020;300021;300022;300023;300024;300025;300026;300027;300028	299987		968	50	
MESYHKPDQQK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1489.6507	0.65074314	1322	P29401	TKT	Transketolase	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4					4	1	2	27.346	19.769	2;3	0.00013481	9548	160513_QHF_FH_JSI10Kac_2	48.44	41.587			0.94492	1.1277	37.757	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0601	1.2607	13.348	4	0	Median	0.48876	0.48495	NaN	1	0	Median	0.83415	0.90959	1.257	2	0	Median	144940000	84188000	60755000	0	0	0	38048000	18586000	19461000	49667000	34854000	14813000	57228000	30747000	26481000	36188	1322	34201	222496;222497;222498;222499;222500;222501;222502	300029;300030;300031;300032;300033;300034	300031	1252;1253	968	6	
MESYHKPDQQK	2	Acetyl (K);Acetyl (Protein N-term)	1473.6558	0.65582851	1322	P29401	TKT	Transketolase	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	0.331					1	7				1	4	2	1	37.849	27.809	2;3	4.9612E-12	17142	160513_QHF_FH_JSI10Kac_3	72.006	48.686			0.95273	1.1399	44.203	5	0	Median	1.8319	1.4519	NaN	1	0	Median	0.96553	1.1539	1.7238	2	0	Median	0.46393	0.46006	NaN	1	0	Median	0.84296	0.92482	NaN	1	0	Median	142790000	78455000	64335000	31490000	11333000	20157000	35380000	18102000	17279000	43163000	30667000	12496000	32757000	18353000	14404000	36189	1322	34201	222503;222504;222505;222506;222507;222508;222509;222510	300035;300036;300037;300038;300039;300040;300041;300042;300043;300044	300042	1252;1253		9	
MESYHKPDQQKLQALK	3	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	2043.0095	0.0095254139	1322	P29401	TKT	Transketolase	yes	yes	1	1	1	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	53.153	42.564	3	3.0804E-05	23524	160513_QHF_FH_JSI11Kac_5	55.755	49.911			0.61738	0.65744	63.354	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0274	1.2461	NaN	1	0	Median	0.35287	0.35097	NaN	1	0	Median	0.61738	0.65744	NaN	1	0	Median	30542000	20436000	10106000	0	0	0	6549200	3514200	3035000	20363000	14715000	5647800	3629800	2206900	1423000	36190	1322	34202	222511;222512;222513	300045;300046	300045	1251;1252;1253	968	2	
MESYHKPDQQKLQALK	3	Acetyl (K);Acetyl (Protein N-term)	2027.0146	0.014610792	1322	P29401	TKT	Transketolase	yes	yes	1	1	0	2		By MS/MS	By MS/MS		15	0								2			1	1		62.339	51.547	3	1.0148E-07	28065	160513_QHF_FH_JSI11Kac_5	57.288	54.143			0.63536	0.69446	79.081	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0113	1.2148	NaN	1	0	Median	0.39919	0.397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27591000	17737000	9854500	0	0	0	7581900	3463900	4118000	20009000	14273000	5736500	0	0	0	36191	1322	34202	222514;222515	300047;300048;300049	300047	1251;1252;1253		3	
METEADAPSPAPSLGER	0	Unmodified	1756.7938	0.79377856	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.493	41.998	2	0.00031739	37936	160511_QHF_FH_JSI11i_1	70.412	54.522			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36192	2318	34203	222516;222517	300050;300051	300050			2	
METEQPEETFPNTETNGEFGK	1	Acetyl (Protein N-term)	2456.0326	0.032564859	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									4	3	3	4	71.856	71.3	2;3	3.2741E-49	64711	160511_QHF_FH_JSI11i_1	138.21	137.76			1.0908	1.103	3.7758	8	0	Median	1.2993	1.0776	4.8265	2	0	Median	0.97462	1.1425	5.7894	2	0	Median	1.1039	1.0857	0.013624	2	0	Median	1.0652	1.1143	0.63568	2	0	Median	2193700000	1039500000	1154300000	545440000	221750000	323690000	550010000	286040000	263970000	617450000	309060000	308390000	480840000	222640000	258200000	36193	1975	34204	222518;222519;222520;222521;222522;222523;222524;222525;222526;222527;222528;222529;222530;222531	300052;300053;300054;300055;300056;300057;300058;300059;300060;300061;300062;300063;300064;300065;300066;300067;300068;300069;300070;300071;300072;300073;300074;300075;300076	300054			25	
METEQPEETFPNTETNGEFGK	1	Acetyl (Protein N-term);Oxidation (M)	2472.0275	0.027479482	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	1	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	62.779	62.061	3	8.0537E-13	56404	160511_QHF_FH_JSI12i_1	107.41	105.57			1.1435	1.0428	13.498	2	0	Median	1.1624	0.94784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1249	1.1472	NaN	1	0	Median	185710000	111300000	74413000	52305000	26211000	26094000	0	0	0	49356000	49356000	0	84050000	35731000	48319000	36194	1975	34204	222532;222533;222534;222535	300077;300078;300079	300078		1639	3	
METGTAPLVAPPR	0	Acetyl (Protein N-term)	1380.7071	0.7071358	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				67.798	66.805	2	0.03839	59350	160511_QHF_FH_JSI9i_1	33.359	23.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36195	2836	34205	222536	300080	300080			1	
METGTAPLVAPPRR	0	Acetyl (Protein N-term)	1536.8082	0.80824683	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	1	0	1	By MS/MS			By MS/MS	2	0		2								1			1	54.952	53.753	2	0.020744	46056	160511_QHF_FH_JSI12i_2	36.334	23.378			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36196	2836	34206	222537;222538	300081;300082	300081			2	
METILEQQR	0	Acetyl (Protein N-term)	1188.5809	0.58087266	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.657	69.104	2	2.04E-12	62978	160511_QHF_FH_JSI12i_1	178.99	163.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36197	2319	34207	222539;222540;222541;222542	300083;300084;300085;300086;300087;300088;300089	300086			7	
METILEQQRR	0	Acetyl (Protein N-term)	1344.682	0.68198369	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	2	3	57.893	57.229	2	2.1656E-06	49729	160511_QHF_FH_JSI11i_2	138.54	111.76			0.37451	0.38546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37451	0.38546	NaN	1	0	Median	24106000	17309000	6797500	0	0	0	0	0	0	0	0	0	24106000	17309000	6797500	36198	2319	34208	222543;222544;222545;222546;222547;222548;222549;222550	300090;300091;300092;300093;300094;300095;300096;300097;300098;300099	300096			10	
METLSFPR	0	Acetyl (Protein N-term)	1021.4903	0.49026674	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				76.945	76.053	2	0.0010145	67558	160511_QHF_FH_JSI9i_1	77.923	52.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36199	4557	34209	222551	300100	300100			1	
METMASPGK	1	Acetyl (Protein N-term)	992.4307	0.43070295	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.17	36.558	2	2.0355E-06	32984	160511_QHF_FH_JSI12i_1	66.351	39.389			0.78709	0.99908	2.9757	4	0	Linear	1.2495	1.0087	NaN	1	0	Median	0.79363	0.94517	NaN	1	0	Median	1.0529	0.99628	NaN	1	0	Median	0.98047	1.0019	NaN	1	0	Median	266880000	138870000	128010000	59330000	29433000	29897000	75831000	43022000	32809000	65224000	31329000	33895000	66491000	35084000	31408000	36200	439	34210	222552;222553;222554;222555	300101;300102;300103;300104;300105	300103			4	
METMASPGKDNYR	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1598.6705	0.6704923	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	1	1	1		By MS/MS		By MS/MS	11.2	0.433				3	1						1		3	47.312	38.184	2	0.00093494	17771	160513_QHF_FH_JSI12Kac_2	67.726	64.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36201	439	34211	222556;222557;222558;222559	300106;300107;300108;300109	300109	225	170;171	4	
METMASPGKDNYR	1	Acetyl (K);Acetyl (Protein N-term)	1582.6756	0.67557768	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			62.715	53.214	2	0.0009164	21485	160513_QHF_FH_JSI10Kac_1	70.977	69.133			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36202	439	34211	222560	300110	300110	225		1	
METMASPGKDNYR	1	Acetyl (K);Acetyl (Protein N-term);2 Oxidation (M)	1614.6654	0.66540692	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	1	1	2	1				By MS/MS	12	0					1								1	34.418	25.851	2	0.023282	12538	160513_QHF_FH_JSI12Kac_2	33.225	33.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36203	439	34211	222561	300111	300111	225	170;171	1	
METPSQR	0	Acetyl (Protein N-term)	889.39637	0.39636635	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.508	17.026	2	0.0042435	14013	160511_QHF_FH_JSI9i_1	64.757	38.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36204	791	34212	222562;222563;222564;222565	300112;300113;300114;300115	300115			4	
METPSQR	0	Acetyl (Protein N-term);Oxidation (M)	905.39128	0.39128097	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.71	4			2						1	1	2	2	13.815	10.514	2	0.0051695	2411	160513_QHF_FH_JSI11Kac_1	65.676	38.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36205	791	34212	222566;222567;222568;222569;222570;222571	300116;300117;300118;300119;300120;300121	300121		303	6	
METPSQRR	0	Acetyl (Protein N-term)	1045.4975	0.49747738	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.06	2	4	1				1			1	2	2	3	12.366	11.082	2	0.0060765	8677	160511_QHF_FH_JSI12i_2	57.281	35.15			0.35772	0.42205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.35772	0.42205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143320000	115590000	27735000	0	0	0	143320000	115590000	27735000	0	0	0	0	0	0	36206	791	34213	222572;222573;222574;222575;222576;222577;222578;222579	300122;300123;300124;300125;300126;300127;300128;300129	300122			8	
METPSQRR	0	Acetyl (Protein N-term);Oxidation (M)	1061.4924	0.492392	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	11.814	11.315	2	0.010339	9004	160511_QHF_FH_JSI9i_2	37.021	26.553			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36207	791	34213	222580;222581;222582;222583	300130;300131;300132;300133	300131		303	4	
METSALK	1	Acetyl (Protein N-term)	820.40005	0.40005474	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			36.304	35.511	1;2	0.0058514	31940	160511_QHF_FH_JSI10i_1	56.122	30.013			1.3591	1.3359	3.6029	2	1	Median	1.5928	1.3023	NaN	1	0	Median	1.1598	1.3704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73787000	33425000	40361000	15066000	5592900	9472800	58721000	27833000	30888000	0	0	0	0	0	0	36208	1505	34214	222584;222585	300134;300135	300134			2	
METTHSFGNPSISVSTQQPPK	1	Unmodified	2272.0794	0.079395893	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	47.872	47.14	3	1.5438E-22	41726	160511_QHF_FH_JSI11i_3	159.4	150.58			0.89448	1.0089	14.471	7	2	Median	0.87749	0.7435	NaN	1	0	Median	0.81766	1.0057	7.9319	2	2	Median	0.99854	0.97133	9.2314	2	0	Median	1.0124	1.0879	10.667	2	0	Median	574360000	283110000	291240000	54715000	27011000	27704000	172650000	99340000	73312000	170610000	66526000	104090000	176370000	90235000	86139000	36209	3927	34215	222586;222587;222588;222589;222590;222591;222592	300136;300137;300138;300139;300140;300141;300142;300143;300144;300145;300146;300147;300148;300149;300150;300151	300137			16	
METTHSFGNPSISVSTQQPPKK	2	Unmodified	2400.1744	0.17435891	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	2	2		41.089	40.271	3;4	8.3134E-16	33676	160511_QHF_FH_JSI10i_3	133.16	125.35			0.94797	1.0738	30.166	5	3	Median	0.94797	0.78622	NaN	1	1	Median	1.1563	1.3298	30.245	2	1	Median	1.1047	1.0455	28.855	2	1	Median	NaN	NaN	NaN	0	0	Median	492900000	245670000	247230000	26366000	20463000	5902500	176210000	97586000	78626000	290320000	127620000	162710000	0	0	0	36210	3927	34216	222593;222594;222595;222596;222597	300152;300153;300154;300155;300156	300154			5	
MEVAANCSLR	0	Acetyl (Protein N-term)	1191.5376	0.53762763	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	52.554	51.887	2	0.013755	47064	160511_QHF_FH_JSI12i_1	43.492	39.548			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36211	4225	34217	222598	300157	300157			1	
MEVAEPSSPTEEEEEEEEHSAEPRPR	0	Acetyl (Protein N-term)	3051.2887	0.28873256	5076	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.429	48.929	3	1.096E-07	44242	160511_QHF_FH_JSI11i_1	64.028	63.224			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36212	5076	34218	222599;222600;222601	300158;300159;300160;300161;300162;300163;300164	300158			7	
MEVDAPGVDGR	0	Acetyl (Protein N-term)	1186.5288	0.52883709	3789	Q8WVX3	C4orf3	Uncharacterized protein C4orf3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.437	51.767	2	2.2115E-06	45979	160511_QHF_FH_JSI9i_1	112.71	111.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36213	3789	34219	222602;222603;222604	300165;300166;300167	300167			3	
MEVDEAEK	1	Unmodified	949.40626	0.40626233	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.025	14.571	2	0.0012187	12158	160511_QHF_FH_JSI10i_1	92.439	54.881			0.99911	1.0258	24.222	4	0	Median	0.90145	0.73292	NaN	1	0	Median	0.83991	0.99725	NaN	1	0	Median	1.1073	1.0551	NaN	1	0	Median	1.2377	1.319	NaN	1	0	Median	1376500000	717860000	658610000	296630000	183740000	112890000	414000000	204520000	209480000	322590000	162220000	160370000	343240000	167380000	175870000	36214	4272	34220	222605;222606;222607;222608	300168;300169;300170;300171;300172;300173	300172			6	
MEVDYSATVDQR	0	Unmodified	1412.6242	0.62419403	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	41.368	40.728	2	7.2815E-08	36547	160511_QHF_FH_JSI10i_1	138.25	106.31			0.90682	0.92048	58.143	5	3	Median	1.2952	1.0593	NaN	1	1	Median	0.56101	0.65064	NaN	1	0	Median	0.27025	0.26262	NaN	1	0	Median	0.93792	0.96735	7.0247	2	2	Median	838780000	463000000	375780000	185070000	69349000	115720000	150870000	113950000	36924000	125360000	102530000	22824000	377480000	177170000	200310000	36215	110	34221	222609;222610;222611;222612;222613	300174;300175;300176;300177;300178;300179	300177			6	
MEVENCLATTSIR	0	Unmodified	1522.712	0.71196318	5803				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.402	46.743	2	0.00035471	42419	160511_QHF_FH_JSI12i_1	96.847	7.5639	+		1.4173	1.4629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4173	1.4629	NaN	1	1	Median	34958000	12813000	22145000	0	0	0	0	0	0	0	0	0	34958000	12813000	22145000	36216	5803	34222	222614	300180	300180			1	
MEVENPNYALTSR	0	Unmodified	1522.7086	0.70859237	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			47.171	46.745	2	5.1249E-05	42059	160511_QHF_FH_JSI10i_1	77.305	52.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36217	1305	34223	222615	300181	300181			1	
MEVGPTMVGDEQSDPELMQHLGASK	1	Unmodified	2685.2084	0.20843751	1337	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.371	73.689	3	1.2131E-28	67129	160511_QHF_FH_JSI12i_1	156.47	152.92			0.98031	1.0225	10.885	8	0	Median	1.3776	1.166	14.054	2	0	Median	0.88586	1.0567	15.099	2	0	Median	0.98565	0.98214	6.95	2	0	Median	0.9239	1.0022	1.5835	2	0	Median	1172300000	568950000	603390000	235870000	104200000	131670000	291950000	131490000	160460000	333220000	168040000	165190000	311290000	165220000	146070000	36218	1337	34224	222616;222617;222618;222619;222620;222621;222622;222623	300182;300183;300184;300185;300186;300187;300188;300189;300190;300191;300192;300193;300194;300195;300196;300197;300198;300199;300200;300201	300188			20	
MEVHGKPK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1024.5012	0.50116577	3545	Q8N5I9	C12orf45	Uncharacterized protein C12orf45	yes	yes	1	1	1	1				By MS/MS	13	0						1							1	18.599	11.591	2	0.020416	7974	160513_QHF_FH_JSI12Kac_3	41.029	14.336			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36219	3545	34225	222624	300202	300202	2882	2265	1	
MEVISLQNEK	1	Unmodified	1189.6013	0.60127375	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	3	3	1	47.055	46.341	2	9.0344E-05	41693	160511_QHF_FH_JSI10i_1	85.377	67.152			1.1882	1.4714	33.82	7	5	Median	1.2331	1.0577	49.459	2	1	Median	1.0084	1.2129	27.733	2	1	Median	1.4777	1.4714	41.275	3	3	Median	NaN	NaN	NaN	0	0	Median	531790000	276670000	255110000	113660000	59658000	54006000	127340000	66528000	60813000	290780000	150490000	140290000	0	0	0	36220	3896	34226	222625;222626;222627;222628;222629;222630;222631;222632;222633;222634	300203;300204;300205;300206;300207;300208;300209;300210;300211;300212;300213;300214	300206			12	
MEVKPPPGRPQPDSGR	1	Acetyl (Protein N-term)	1788.8941	0.89410173	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	1	0	2	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		31.912	31.122	3	1.3935E-05	27348	160511_QHF_FH_JSI10i_2	53.169	40.884			1.1007	1.11	6.6899	3	0	Median	1.2212	1.0387	NaN	1	0	Median	0.9859	1.1874	NaN	1	0	Median	1.1007	1.11	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	396000000	186490000	209510000	168260000	69877000	98386000	156280000	86953000	69326000	71459000	29660000	41799000	0	0	0	36221	1763	34227	222635;222636;222637	300215;300216;300217;300218;300219	300218			5	
MEVLAAETTSQQER	0	Acetyl (Protein N-term)	1633.7618	0.76175015	563	O75781	PALM	Paralemmin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		74.357	73.886	2	9.851E-07	67175	160511_QHF_FH_JSI11i_1	128.28	120.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36222	563	34228	222638;222639;222640	300220;300221;300222	300220			3	
MEVLRPQLIR	0	Acetyl (Protein N-term)	1295.7384	0.73837635	3576	Q8N9N2	ASCC1	Activating signal cointegrator 1 complex subunit 1	yes	yes	0	1	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	77.167	76.655	2	8.698E-05	67594	160511_QHF_FH_JSI9i_2	90.629	53.154			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36223	3576	34229	222641;222642	300223;300224	300223			2	
MEVMNLMEQPIK	1	Acetyl (Protein N-term)	1503.7135	0.71354309	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	102	101.89	2	3.2664E-16	92629	160511_QHF_FH_JSI11i_1	116.3	109.18			1.1831	0.963	250.7	5	3	Median	1.1831	0.963	NaN	1	0	Median	0.049265	0.058755	NaN	1	1	Median	1.309	1.27	NaN	1	0	Median	1.6536	1.7208	411.56	2	2	Median	1022000000	554830000	467140000	304880000	154360000	150520000	131920000	127540000	4383100	363300000	162940000	200350000	221880000	109990000	111890000	36224	1065	34230	222643;222644;222645;222646;222647	300225;300226;300227;300228;300229;300230	300225			6	
MEVMNLMEQPIK	1	Acetyl (Protein N-term);2 Oxidation (M)	1535.7034	0.70337233	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	1	2	0		By MS/MS		By MS/MS	11.9	0.759				4	5	3					3		9	76.812	68.511	2	3.6889E-06	31041	160513_QHF_FH_JSI12Kac_2	61.65	54.762			0.97175	1.0418	7.4866	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97175	1.0418	7.4866	4	0	Median	35341000	19688000	15654000	0	0	0	2969800	2969800	0	0	0	0	32372000	16718000	15654000	36225	1065	34230	222648;222649;222650;222651;222652;222653;222654;222655;222656;222657;222658;222659	300231;300232;300233;300234;300235;300236;300237;300238;300239;300240;300241	300240		707;708;709	11	
MEVMNLMEQPIK	1	Acetyl (Protein N-term);3 Oxidation (M)	1551.6983	0.69828696	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	1	3	0		By MS/MS		By MS/MS	11.6	0.718				7	5	2					1		13	61.779	52.366	2	8.9545E-09	23324	160513_QHF_FH_JSI12Kac_2	64.297	59.999			0.94219	0.99395	14.207	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94219	0.99395	14.207	5	0	Median	25942000	13884000	12058000	0	0	0	933290	933290	0	0	0	0	25009000	12951000	12058000	36226	1065	34230	222660;222661;222662;222663;222664;222665;222666;222667;222668;222669;222670;222671;222672;222673	300242;300243;300244;300245;300246;300247;300248;300249;300250;300251;300252;300253	300250		707;708;709	12	
MEVMNLMEQPIK	1	Acetyl (Protein N-term);Oxidation (M)	1519.7085	0.70845771	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	1	1	0				By MS/MS	13	0						1							1	84.398	76.125	2	0.0060336	37232	160513_QHF_FH_JSI12Kac_3	48.64	34.734			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36227	1065	34230	222674	300254	300254		707;708;709	1	
MEVQEQEEDISSLIR	0	Unmodified	1804.8513	0.85129344	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	74.093	73.648	2	1.3012E-07	67133	160511_QHF_FH_JSI12i_1	174.73	153.36			0.42686	0.42657	19.302	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38095	0.37215	NaN	1	1	Median	0.47831	0.48895	NaN	1	1	Median	109670000	61087000	48584000	0	0	0	0	0	0	54822000	29884000	24938000	54849000	31203000	23646000	36228	2094	34231	222675;222676	300255;300256	300256			2	
MEVSPLQPVNENMQVNK	1	Acetyl (Protein N-term)	1997.955	0.955047	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	4									2		2		80.958	80.356	2	1.1518E-08	73160	160511_QHF_FH_JSI11i_1	106.49	97.979			1.2065	1.0918	54.145	2	0	Median	0.87289	0.74452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6676	1.6011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60298000	25760000	34538000	28150000	15674000	12477000	0	0	0	32148000	10087000	22061000	0	0	0	36229	999	34232	222677;222678;222679;222680	300257;300258;300259;300260	300257			4	
MEVTGDAGVPESGEIR	0	Acetyl (Protein N-term)	1687.7723	0.77231483	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		64.818	64.42	2	4.9785E-17	57164	160511_QHF_FH_JSI9i_1	117.2	107.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36230	117	34233	222681;222682;222683;222684	300261;300262;300263;300264	300263			4	
MEVVEAAAAQLETLK	1	Acetyl (Protein N-term)	1643.844	0.84402322	4112	Q96HR8	NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.745	5		1							1	3	1	1	103.84	103.74	2	3.1857E-81	94571	160511_QHF_FH_JSI10i_1	145.55	108.36			0.80507	0.89064	133.05	4	1	Median	1.2401	1.0577	NaN	1	0	Median	0.64999	0.77347	NaN	1	0	Median	0.069693	0.066895	NaN	1	1	Median	0.99716	1.0256	NaN	1	0	Median	193920000	116600000	77322000	28155000	12537000	15618000	61946000	40609000	21337000	32012000	29794000	2217900	71808000	33659000	38149000	36231	4112	34234	222685;222686;222687;222688;222689;222690	300265;300266;300267;300268;300269;300270;300271	300269			7	
MEWGSESAAVRR	0	Acetyl (Protein N-term)	1419.6565	0.65649722	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	48.172	47.337	2	1.1635E-05	41490	160511_QHF_FH_JSI9i_2	112.75	92.987			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36232	3248	34235	222691;222692;222693;222694;222695	300272;300273;300274;300275;300276	300273			5	
MEWVLAEALLSQSR	0	Acetyl (Protein N-term)	1673.8447	0.84469192	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	104.11	104.01	2	9.7531E-07	91744	160511_QHF_FH_JSI11i_2	132.03	112.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36233	2397	34236	222696;222697;222698	300277;300278;300279	300278			3	
MEYASDASLDPEAPWPPAPR	0	Acetyl (Protein N-term)	2241.0048	0.0048339665	1521	P41273	TNFSF9	Tumor necrosis factor ligand superfamily member 9	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	3									1		2		98.26	98.027	2	1.6114E-08	88815	160511_QHF_FH_JSI11i_1	99.011	93.517			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36234	1521	34237	222699;222700;222701	300280;300281;300282	300280			3	
MEYDGILIAGGPGNPALAEPLIQNVRK	1	Unmodified	2835.4953	0.49529912	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	98.573	98.453	3	4.4349E-18	86115	160511_QHF_FH_JSI9i_2	109.68	107.34			1.0934	1.1506	4.4692	7	0	Median	1.315	1.1146	NaN	1	0	Median	0.99719	1.1639	1.6212	2	0	Median	1.2115	1.1719	3.117	2	0	Median	1.0798	1.1449	9.3806	2	0	Median	535320000	272460000	262860000	91960000	40808000	51152000	139590000	72104000	67486000	181960000	94858000	87099000	121810000	64690000	57118000	36235	1372	34238	222702;222703;222704;222705;222706;222707;222708	300283;300284;300285;300286;300287;300288;300289;300290;300291;300292;300293;300294;300295;300296;300297;300298;300299;300300;300301;300302;300303;300304	300293			22	
MEYENPITR	0	Unmodified	1151.5281	0.5281088	2794	Q2NKX8	ERCC6L	DNA excision repair protein ERCC-6-like	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	14	0							3				1	1	1	47.136	36.813	2	0.023777	21365	160513_QHF_FH_JSI12Kac_4	50.04	33.264			1.5145	1.6314	27.872	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1328	1.3395	NaN	1	0	Median	2.0249	1.9868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6963000	3171600	3791400	0	0	0	4036800	2098400	1938400	2926200	1073200	1853000	0	0	0	36236	2794	34239	222709;222710;222711	300305;300306	300306			2	
MEYFMVPTQK	1	Acetyl (Protein N-term)	1314.5988	0.59883091	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	94.487	94.144	2	0.0001748	85425	160511_QHF_FH_JSI10i_1	47.187	41.266			1.2989	1.171	12.974	4	0	Median	1.3097	1.0693	NaN	1	0	Median	0.99314	1.1204	NaN	1	0	Median	1.2882	1.2239	NaN	1	0	Median	1.4126	1.4357	NaN	1	0	Median	76078000	33601000	42477000	17753000	8967700	8785100	17997000	6880400	11117000	21967000	8984200	12983000	18361000	8768500	9592100	36237	2174	34240	222712;222713;222714;222715	300307;300308;300309;300310	300308			4	
MEYLIGIQGPDYVLVASDR	0	Acetyl (Protein N-term)	2180.0824	0.082356006	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	3									2	1			102.97	102.85	2;3	8.6915E-07	93705	160511_QHF_FH_JSI10i_1	102.33	89.385			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36238	1673	34241	222716;222717;222718	300311;300312;300313	300311			3	
MFADDLHNLNK	1	Unmodified	1316.6183	0.6183208	2840	Q4U2R6	MRPL51	39S ribosomal protein L51, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		6								1	2	1	2	42.591	41.543	2;3	9.6551E-05	35682	160511_QHF_FH_JSI12i_2	70.488	62.764			0.81808	0.91205	27.125	5	0	Median	0.7636	0.64315	NaN	1	0	Median	1.1155	1.362	NaN	1	0	Median	1.0144	1.0296	NaN	1	0	Median	0.79238	0.89848	2.1201	2	0	Median	645260000	295270000	349980000	92774000	41840000	50934000	127950000	65748000	62201000	259960000	125050000	134910000	164570000	62639000	101930000	36239	2840	34242	222719;222720;222721;222722;222723;222724	300314;300315;300316;300317;300318	300315			4	
MFADYLAHESR	0	Unmodified	1338.6027	0.60267073	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.75	0.433		1	3								1	3		42.894	42.653	2;3	0.00045295	37608	160511_QHF_FH_JSI11i_3	73.848	63.894			1.4115	1.5139	38.947	4	4	Median	NaN	NaN	NaN	0	0	Median	1.3444	1.6444	NaN	1	1	Median	1.4819	1.3938	45.748	3	3	Median	NaN	NaN	NaN	0	0	Median	184940000	81676000	103260000	0	0	0	38852000	16340000	22512000	146090000	65336000	80753000	0	0	0	36240	178	34243	222725;222726;222727;222728	300319;300320;300321;300322	300320			4	
MFADYLAHESRR	0	Unmodified	1494.7038	0.70378176	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				39.161	37.67	4	0.047887	30641	160511_QHF_FH_JSI9i_3	21.246	18.379			1.1241	0.90698	NaN	1	0	Median	1.1241	0.90698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25165000	10894000	14271000	25165000	10894000	14271000	0	0	0	0	0	0	0	0	0	36241	178	34244	222729	300323	300323			0	
MFAEEEAELTQEMSPEK	1	Unmodified	1997.8598	0.85980921	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	5									1	1	2	1	70.579	70.038	2;3	1.3513E-40	63642	160511_QHF_FH_JSI11i_1	166.38	135.55			1.1613	1.2482	29.571	4	0	Median	2.1744	1.7787	NaN	1	0	Median	1.2066	1.419	NaN	1	0	Median	1.1177	1.098	NaN	1	0	Median	0.88116	0.90382	NaN	1	0	Median	119460000	59462000	59998000	15284000	7340900	7943500	28510000	13387000	15124000	41612000	20326000	21286000	34053000	18408000	15644000	36242	4651	34245	222730;222731;222732;222733;222734	300324;300325;300326	300324			2	
MFAKAFR	1	Acetyl (K);Acetyl (Protein N-term)	953.47931	0.47930812	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	1	1	0	1			By MS/MS		15	0								1				1		86.205	75.697	2	0.046446	39816	160513_QHF_FH_JSI11Kac_5	37.021	34.445			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36243	1512	34246	222735	300327	300327			1	
MFAPTKTWR	1	Acetyl (K)	1178.5906	0.59064948	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	63.256	54.019	2	0.01562	28690	160513_QHF_FH_JSI9Kac_6	57.598	51.677			0.8557	0.96076	27.529	4	0	Median	1.2081	1.0071	NaN	1	0	Median	0.86509	1.0302	NaN	1	0	Median	0.60464	0.57236	NaN	1	0	Median	0.84641	0.91658	NaN	1	0	Median	164320000	94218000	70097000	14968000	6980000	7987700	72940000	41141000	31799000	52218000	32807000	19411000	24189000	13290000	10899000	36244	1457	34247	222736;222737;222738;222739	300328;300329;300330	300329	1440		3	
MFDMGFEPQVMR	0	Unmodified	1486.6407	0.6407125	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	80.853	79.995	2	3.9781E-06	70351	160511_QHF_FH_JSI11i_2	119.68	111.1			0.73148	0.79162	14.734	5	5	Median	1.0324	0.87514	NaN	1	1	Median	0.60737	0.73151	NaN	1	1	Median	0.71415	0.72121	NaN	1	1	Median	0.83654	0.90287	18.597	2	2	Median	332870000	176100000	156780000	52325000	24747000	27578000	53282000	31311000	21971000	113910000	61843000	52063000	113360000	58197000	55163000	36245	3216	34248	222740;222741;222742;222743;222744	300331;300332;300333;300334;300335	300334			5	
MFDVGGQR	0	Unmodified	908.41744	0.41743614	915;818;2049	P04899;P08754;P19087;P63096	GNAI2;GNAI3;GNAT2;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	26.434	25.461	2	7.9117E-05	21292	160511_QHF_FH_JSI12i_2	132.29	117.87			0.93753	1.0216	7.4626	5	0	Median	1.0479	0.89594	NaN	1	0	Median	0.85072	1.0083	8.8176	2	0	Median	1.0291	1.0456	NaN	1	0	Median	0.90774	1.0216	NaN	1	0	Median	2390100000	1256200000	1133900000	499640000	200460000	299190000	511140000	275510000	235630000	902180000	510680000	391500000	477120000	269500000	207620000	36246	818;915;2049	34249	222745;222746;222747;222748;222749	300336;300337;300338;300339;300340;300341;300342;300343;300344	300336			9	
MFDYTDDPEGPVMPGSHSVER	0	Unmodified	2364.9991	0.99909666	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	59.817	59.192	3	1.3487E-22	50720	160511_QHF_FH_JSI12i_2	160.67	157.66			1.0563	1.0788	10.434	7	1	Median	1.5451	1.3552	NaN	1	1	Median	0.83019	1.0082	NaN	1	0	Median	1.1263	1.0815	4.7579	3	0	Plateau	0.98756	1.0312	1.9663	2	0	Median	1167000000	540300000	626660000	132500000	46350000	86152000	260420000	124170000	136250000	422810000	207350000	215460000	351220000	162430000	188790000	36247	2284	34250	222750;222751;222752;222753;222754;222755;222756	300345;300346;300347;300348;300349;300350;300351;300352;300353;300354;300355	300349			10	
MFDYTDDPEGPVMPGSHSVER	0	Oxidation (M)	2380.994	0.99401128	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	50.565	50.33	3	1.9391E-05	43114	160511_QHF_FH_JSI12i_3	77.08	72.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13264000	0	13264000	0	0	0	0	0	0	0	0	0	13264000	0	13264000	36248	2284	34250	222757	300356	300356		1881	1	
MFEDPETTR	0	Unmodified	1124.4808	0.48082426	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	27.402	25.7	2	5.2914E-06	22757	160511_QHF_FH_JSI10i_1	116.25	60.24			1.0848	1.126	9.3226	9	1	Median	1.4133	1.1806	4.29	2	0	Median	0.85882	1.0514	12.643	3	1	Plateau	1.0485	1.0311	10.109	2	0	Median	1.0447	1.1127	1.6726	2	0	Median	2404100000	1270000000	1134100000	419120000	208440000	210680000	726080000	385910000	340160000	636970000	359800000	277180000	621910000	315860000	306060000	36249	1909	34251	222758;222759;222760;222761;222762;222763;222764;222765;222766	300357;300358;300359;300360;300361;300362;300363;300364;300365;300366;300367;300368;300369;300370;300371;300372	300364			16	
MFEEKASSPSGK	2	Acetyl (K);Acetyl (Protein N-term)	1380.6231	0.6231314	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		63.478	53.95	2	0.0045795	21071	160513_QHF_FH_JSI11Kac_1	55.314	38.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36250	1282	34252	222767	300373	300373	1203		1	
MFEELGQR	0	Unmodified	1008.4699	0.46986564	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	34.319	33.521	2	0.0011596	28557	160511_QHF_FH_JSI11i_2	111.04	92.305			0.43117	0.40513	46.232	5	4	Median	0.46587	0.3918	NaN	1	1	Median	0.32744	0.40513	NaN	1	1	Median	0.63637	0.63652	50.918	2	1	Median	0.22704	0.2538	NaN	1	1	Median	1330100000	747540000	582560000	235550000	122160000	113390000	329510000	230650000	98851000	511360000	246260000	265100000	253690000	148460000	105220000	36251	3852	34253	222768;222769;222770;222771;222772	300374;300375;300376;300377;300378	300377			5	
MFEFYER	0	Unmodified	1020.4375	0.43750288	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2	0		3								1	1		1	53.284	52.166	2	0.0037065	44686	160511_QHF_FH_JSI12i_2	102.77	93.185			0.9774	1.0857	9.2775	3	0	Median	1.3349	1.1357	NaN	1	0	Median	0.78039	0.95013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9774	1.0857	NaN	1	0	Median	521350000	278480000	242860000	144600000	73456000	71146000	160730000	93674000	67052000	0	0	0	216020000	111350000	104670000	36252	497	34254	222773;222774;222775	300379	300379			1	
MFEGEMASLTAILK	1	Unmodified	1539.7677	0.76768715	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		101.02	100.92	2	0.00028965	88613	160511_QHF_FH_JSI11i_2	82.278	74.632			1.1257	1.2547	70.575	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61498	0.76176	NaN	1	0	Median	2.0606	2.0667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325680000	113470000	212210000	0	0	0	80807000	47285000	33522000	244870000	66185000	178690000	0	0	0	36253	4817	34255	222776;222777	300380	300380			1	
MFEIVFEDPK	1	Unmodified	1253.6002	0.60021112	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	2	1	1	79.478	78.592	2	1.0811E-05	68983	160511_QHF_FH_JSI11i_2	104.2	94.986			0.75543	0.78663	48.441	6	3	Median	0.86383	0.72862	19.626	2	1	Median	0.87882	1.0715	98.381	2	2	Median	0.76343	0.78157	NaN	1	0	Median	0.7069	0.79172	NaN	1	0	Median	466750000	235960000	230790000	74523000	34853000	39671000	145100000	77753000	67344000	138090000	67148000	70940000	109040000	56205000	52836000	36254	878	34256	222778;222779;222780;222781;222782;222783	300381;300382;300383;300384;300385;300386;300387	300384			7	
MFEIVFEDPKIPGEK	2	Unmodified	1777.8961	0.89605879	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	86.118	85.34	3	0.010409	73720	160511_QHF_FH_JSI12i_2	47.774	42.669			2.3479	2.2688	61.118	2	2	Median	4.1403	3.4953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3315	1.4727	NaN	1	1	Median	173360000	66058000	107310000	72069000	15421000	56648000	0	0	0	0	0	0	101300000	50637000	50658000	36255	878	34257	222784;222785	300388;300389	300388			2	
MFESFIESVPLLK	1	Unmodified	1538.8055	0.80545286	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	101.51	101.39	2	0.00018115	87256	160511_QHF_FH_JSI12i_2	145.46	127.15			0.66687	0.78947	40.157	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84352	1.0487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52721	0.59432	NaN	1	1	Median	319350000	197980000	121370000	0	0	0	168360000	106420000	61934000	0	0	0	150990000	91558000	59433000	36256	1043	34258	222786;222787	300390;300391	300390			1	
MFFDALYDEDVVK	1	Unmodified	1590.7276	0.72759647	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	91.213	90.758	2	4.2527E-05	79582	160511_QHF_FH_JSI11i_2	136.48	121.78			1.3457	1.335	45.873	5	4	Median	1.2315	1.0651	NaN	1	1	Median	1.0835	1.3015	86.546	2	1	Median	1.3457	1.335	NaN	1	1	Median	1.5126	1.6366	NaN	1	1	Median	335870000	152920000	182950000	58499000	24655000	33844000	106920000	53079000	53845000	87423000	44220000	43203000	83025000	30964000	52061000	36257	2217	34259	222788;222789;222790;222791;222792	300392;300393;300394;300395;300396	300395			5	
MFFGSAALGTLTGLISALVLK	1	Unmodified	2109.1908	0.19078424	5515	Q9Y2E8	SLC9A8	Sodium/hydrogen exchanger 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.17	99.453	3	1.3995E-16	58887	160513_QHF_FH_JSI10Kac_6	123.55	114.46			0.52695	0.60998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52695	0.60998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54769000	34359000	20410000	0	0	0	54769000	34359000	20410000	0	0	0	0	0	0	36258	5515	34260	222793	300397;300398	300397			2	
MFFLFPDPHFK	1	Unmodified	1424.6951	0.69511455	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		6	8						6	5	4	7	4	95.368	92.282	2;3	9.9868E-08	42958	160513_QHF_FH_JSI12Kac_6	107.83	96.217			0.95112	0.79596	57.963	17	11	Median	1.4268	1.2054	81.637	4	3	Median	1.0526	1.2294	65.205	4	3	Median	0.78435	0.75629	54.239	5	4	Median	0.66886	0.72811	27.62	4	1	Median	935300000	443380000	491910000	197740000	74479000	123260000	249980000	113040000	136930000	267260000	138170000	129090000	220320000	117690000	102630000	36259	5245	34261	222794;222795;222796;222797;222798;222799;222800;222801;222802;222803;222804;222805;222806;222807;222808;222809;222810;222811;222812;222813	300399;300400;300401;300402;300403;300404;300405;300406;300407;300408;300409;300410;300411;300412;300413;300414;300415;300416;300417;300418;300419;300420;300421;300422;300423;300424;300425;300426;300427;300428	300424			30	
MFFLFPDPHFK	1	Oxidation (M)	1440.69	0.69002918	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	1	0				By MS/MS	16	0									2				2	86.089	76.647	3	0.0021321	40932	160513_QHF_FH_JSI12Kac_6	62.466	52.414			0.47687	0.50812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47687	0.50812	NaN	1	1	Median	44691000	31009000	13682000	0	0	0	0	0	0	0	0	0	44691000	31009000	13682000	36260	5245	34261	222814;222815	300429;300430	300429		2612	2	
MFGIDRDAIAQAVR	0	Unmodified	1561.8035	0.8034958	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.42	0.493		7	5							4	4	4		66.169	65.208	2;3	1.1281E-05	53472	160511_QHF_FH_JSI9i_3	136.81	104.2			0.88156	0.92072	10.698	11	1	Median	1.1796	0.93217	3.0251	4	0	Linear	0.77725	0.92468	15.329	4	0	Median	0.88156	0.8435	12.143	3	1	Median	NaN	NaN	NaN	0	0	Median	3624300000	1705700000	1918600000	1536600000	582180000	954430000	1515100000	848950000	666160000	572620000	274610000	298020000	0	0	0	36261	1322	34262	222816;222817;222818;222819;222820;222821;222822;222823;222824;222825;222826;222827	300431;300432;300433;300434;300435;300436;300437;300438;300439;300440;300441;300442;300443;300444;300445;300446;300447;300448;300449	300439			19	
MFGIDRDAIAQAVR	0	Oxidation (M)	1577.7984	0.79841043	1322	P29401	TKT	Transketolase	yes	yes	0	0	1	1	By MS/MS	By matching			3	0			3							2	1			60.634	59.11	3	0.0010652	48718	160511_QHF_FH_JSI9i_3	66.004	55.217			1.2081	0.9781	3.5954	3	0	Median	1.2386	0.99048	1.7779	2	0	Median	0.827	0.93434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	498030000	235440000	262600000	354010000	153120000	200900000	144020000	82319000	61703000	0	0	0	0	0	0	36262	1322	34262	222828;222829;222830	300450;300451;300452	300451		969	3	
MFGIPVVVAVNAFK	1	Unmodified	1490.8319	0.83194239	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.51		1	9						8	4	4	6	4	98.658	94.663	2;3	7.7887E-41	90932	160511_QHF_FH_JSI11i_3	160.18	152.27			1.0253	1.005	20.243	17	0	Median	1.1359	0.93864	9.2506	4	0	Median	0.84665	0.97226	7.8977	4	0	Median	1.1652	1.0977	34.079	5	0	Median	0.83459	0.8714	18.332	4	0	Median	15595000000	7903300000	7691600000	3350100000	1468600000	1881500000	3858000000	2014500000	1843500000	3176400000	1616600000	1559800000	5210500000	2803700000	2406800000	36263	1004	34263	222831;222832;222833;222834;222835;222836;222837;222838;222839;222840;222841;222842;222843;222844;222845;222846;222847;222848	300453;300454;300455;300456;300457;300458;300459;300460;300461;300462;300463;300464;300465;300466;300467;300468;300469;300470;300471;300472;300473;300474;300475;300476;300477;300478;300479;300480;300481;300482;300483;300484	300453			32	
MFGIPVVVAVNAFK	1	Oxidation (M)	1506.8269	0.82685701	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	4.44	4.09			8						1	3	3		3	100.1	98.662	2;3	2.0312E-09	83869	160511_QHF_FH_JSI10i_3	106.2	90.609			1.1774	1.0643	21.962	7	2	Median	1.1065	0.88091	23.632	2	0	Median	1.0447	1.2319	20.686	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1774	1.1778	15.879	3	0	Median	1118000000	506420000	611570000	307830000	141350000	166490000	299190000	126840000	172350000	0	0	0	510970000	238230000	272730000	36264	1004	34263	222849;222850;222851;222852;222853;222854;222855;222856;222857	300485;300486;300487;300488;300489;300490;300491;300492;300493;300494;300495	300487		586	11	
MFGMVLEK	1	Unmodified	953.47145	0.47144555	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.99		8	6						5	4	5	4	6	62.245	59.022	2	0.00058502	50596	160511_QHF_FH_JSI12i_3	98.523	73.6			1.5661	1.7477	121.73	18	17	Median	3.187	2.7085	137.48	4	4	Median	1.2359	1.4301	130.21	5	5	Median	2.3047	2.1693	131.02	4	3	Median	0.49968	0.53867	122.57	5	5	Median	3597500000	1790900000	1806600000	622240000	292960000	329280000	938360000	537810000	400550000	1138800000	533790000	605010000	898100000	426390000	471710000	36265	1844	34264	222858;222859;222860;222861;222862;222863;222864;222865;222866;222867;222868;222869;222870;222871;222872;222873;222874;222875;222876	300496;300497;300498;300499;300500;300501;300502;300503;300504;300505;300506;300507;300508;300509;300510;300511;300512;300513;300514;300515;300516;300517;300518	300515			23	
MFGMVLEKIIIPEIQK	2	Acetyl (K)	1930.0672	0.067163634	1844	P55060	CSE1L	Exportin-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		98.119	88.707	3	0.0015818	50754	160513_QHF_FH_JSI11Kac_6	68.257	58.507			0.2024	0.19812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2024	0.19812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89015000	81411000	7604400	0	0	0	0	0	0	89015000	81411000	7604400	0	0	0	36266	1844	34265	222877	300519	300519	1852		1	
MFGSSVDLGNLGQ	0	Unmodified	1323.6129	0.61290107	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			76.352	75.819	2	0.00081744	68823	160511_QHF_FH_JSI10i_1	78.816	70.284			0.88805	0.88662	36.727	2	2	Median	1.3426	1.1495	NaN	1	1	Median	0.5874	0.68383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87155000	47745000	39410000	36941000	14314000	22627000	50214000	33432000	16783000	0	0	0	0	0	0	36267	1043	34266	222878;222879	300520;300521	300520			2	
MFHATVATENEVFR	0	Unmodified	1650.7824	0.78242601	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	50.2	50.121	2;3	7.5058E-06	44330	160511_QHF_FH_JSI11i_3	122.46	106.91			2.2491	2.1343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2491	2.1343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134930000	43223000	91708000	0	0	0	0	0	0	118780000	43223000	75554000	16155000	0	16155000	36268	2752	34267	222880;222881;222882;222883;222884	300522;300523;300524;300525;300526	300523			5	
MFHFWVNTFFIPGPEETSEK	1	Unmodified	2442.1355	0.13545421	1911	P60484	PTEN	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.331	84.98	3	1.2884E-07	49681	160513_QHF_FH_JSI10Kac_6	90.718	87.32			1.3821	1.3076	29.434	4	0	Median	1.2601	1.0556	NaN	1	0	Median	0.83471	1.0006	NaN	1	0	Median	1.8251	1.7858	NaN	1	0	Median	1.5159	1.6197	NaN	1	0	Median	658680000	289480000	369200000	177380000	76465000	100920000	308820000	151080000	157730000	88160000	31782000	56378000	84314000	30145000	54169000	36269	1911	34268	222885;222886;222887;222888	300527;300528;300529;300530	300530			4	
MFHGIPATPGIGAPGNKPELYEEVK	2	Acetyl (Protein N-term)	2693.3523	0.35232328	5358	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	85.915	85.436	3	3.357E-11	75806	160511_QHF_FH_JSI10i_2	69.947	62.414			0.95133	0.99694	10.415	6	0	Median	1.2688	1.0601	NaN	1	0	Median	0.88232	1.0897	NaN	1	0	Median	0.95133	0.93247	0.76726	2	0	Median	0.94069	1.0176	18.241	2	0	Median	517920000	273490000	244420000	69317000	25926000	43390000	81588000	46226000	35361000	183660000	100730000	82924000	183350000	100600000	82749000	36270	5358	34269	222889;222890;222891;222892;222893;222894	300531;300532;300533;300534;300535;300536;300537;300538;300539;300540;300541	300538			11	
MFHGIPATPGIGAPGNKPELYEEVK	2	Acetyl (Protein N-term);Oxidation (M)	2709.3472	0.3472379	5358	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	1	1	1			By MS/MS		3	0			1									1		76.468	76.468	3	0.0055703	68278	160511_QHF_FH_JSI11i_3	31.176	23.983			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36271	5358	34269	222895	300542	300542		2641	1	
MFIATFHFPHPK	1	Unmodified	1471.7435	0.74346173	4713	Q9H497	TOR3A	Torsin-3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	74.024	65.294	3;4	5.5118E-20	35557	160513_QHF_FH_JSI11Kac_6	156.71	143.28			1.1655	1.1205	11.699	7	1	Median	1.1896	1.0271	NaN	1	0	Median	0.99981	1.1747	25.062	2	1	Median	1.1825	1.1491	2.8241	2	0	Median	1.0163	1.0808	5.1121	2	0	Median	544260000	282150000	262110000	113440000	59307000	54136000	212480000	122850000	89634000	136980000	64820000	72160000	81353000	35172000	46181000	36272	4713	34270	222896;222897;222898;222899;222900;222901;222902	300543;300544;300545;300546;300547;300548;300549;300550;300551;300552;300553	300545			11	
MFIFYGNK	1	Unmodified	1018.4946	0.49462383	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	2	2	1	68.467	62.117	2	0.0007862	34010	160513_QHF_FH_JSI10Kac_6	103.29	79.331			1.2165	1.0881	78.664	7	4	Median	1.2549	1.0277	0.98616	2	1	Median	0.86833	1.0255	105.66	2	2	Median	2.6691	2.5597	120.98	2	1	Median	1.1335	1.1959	NaN	1	0	Median	1392800000	571850000	820900000	259940000	112010000	147930000	407700000	216250000	191450000	597290000	182250000	415040000	127820000	61336000	66482000	36273	635	34271	222903;222904;222905;222906;222907;222908;222909	300554;300555;300556;300557;300558;300559;300560;300561	300560			8	
MFIGGLSWDTSK	1	Unmodified	1340.6435	0.64347291	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.61		11	4						4	5	5	4	5	80.333	77.97	2	4.2647E-19	39241	160513_QHF_FH_JSI9Kac_6	155.06	135.74			0.75899	0.80606	46.543	19	12	Median	0.75899	0.65353	39.812	5	4	Median	0.67287	0.80606	55.975	5	3	Median	1.1069	1.0531	30.912	4	2	Median	0.74182	0.78988	56.756	5	3	Median	5026200000	2488100000	2538200000	1181800000	542900000	638860000	1204900000	698160000	506700000	1595900000	720100000	875790000	1043700000	526910000	516800000	36274	230	34272	222910;222911;222912;222913;222914;222915;222916;222917;222918;222919;222920;222921;222922;222923;222924;222925;222926;222927;222928	300562;300563;300564;300565;300566;300567;300568;300569;300570;300571;300572;300573;300574;300575;300576;300577;300578;300579;300580;300581;300582;300583;300584	300581			23	
MFIGGLSWDTSK	1	Oxidation (M)	1356.6384	0.63838754	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	76.341	66.899	2	0.00016637	35166	160513_QHF_FH_JSI12Kac_6	96.015	83.399			0.83505	0.85047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83505	0.85047	NaN	1	1	Median	19614000	8656900	10957000	0	0	0	0	0	0	0	0	0	19614000	8656900	10957000	36275	230	34272	222929	300585	300585		97	1	
MFIGGLSWDTSKK	2	Unmodified	1468.7384	0.73843593	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	1	By matching	By matching		By MS/MS	3	0			4							1	1		2	68.4	67.314	2;3	3.7951E-07	58086	160511_QHF_FH_JSI12i_3	98.943	85.28			0.93542	0.93732	18.041	3	0	Median	0.94073	0.74982	NaN	1	0	Median	0.93542	1.0717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92808	0.93732	NaN	1	0	Median	276710000	132820000	143890000	53238000	21772000	31467000	47020000	24510000	22510000	0	0	0	176450000	86534000	89914000	36276	230	34273	222930;222931;222932;222933	300586;300587	300587			2	
MFIGGLSWDTTK	1	Unmodified	1354.6591	0.65912298	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.61	2	4	4					3	4	4	5	5	3	81.152	77.821	2	1.1094E-22	70860	160511_QHF_FH_JSI9i_2	173.32	154.54			0.97569	1.026	24.957	15	2	Median	1.2275	1.0346	29.309	4	1	Median	0.73413	0.86023	24.848	4	1	Median	1.1442	1.1253	25.309	4	0	Median	0.7059	1.0719	21.59	3	0	Plateau	8608200000	4243500000	4364600000	1699700000	717450000	982240000	2152000000	1149600000	1002400000	3148900000	1458100000	1690700000	1607600000	918370000	689240000	36277	2488	34274	222934;222935;222936;222937;222938;222939;222940;222941;222942;222943;222944;222945;222946;222947;222948;222949;222950	300588;300589;300590;300591;300592;300593;300594;300595;300596;300597;300598;300599;300600;300601;300602;300603;300604;300605;300606;300607;300608;300609;300610;300611;300612;300613;300614;300615;300616;300617;300618;300619;300620	300605			33	
MFIGGLSWDTTK	1	Oxidation (M)	1370.654	0.6540376	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.484								3	5	3	3	1	1	77.117	67.906	2	5.6217E-08	36366	160513_QHF_FH_JSI9Kac_6	108.47	96.876			0.93948	1.0208	17.355	8	3	Median	1.2221	1.0441	1.8122	3	1	Median	0.86319	1.0208	28.159	3	2	Median	0.99879	0.96204	NaN	1	0	Median	0.86644	0.90385	NaN	1	0	Median	288200000	134850000	153350000	113610000	54270000	59336000	67001000	30683000	36318000	71216000	32222000	38994000	36372000	17671000	18701000	36278	2488	34274	222951;222952;222953;222954;222955;222956;222957;222958	300621;300622;300623;300624;300625;300626;300627;300628;300629;300630	300626		1971	10	
MFIGGLSWDTTKK	2	Unmodified	1482.7541	0.754086	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	69.078	68.29	2;3	8.4948E-07	59120	160511_QHF_FH_JSI12i_3	129.89	101.68			0.91547	1.0019	36.073	6	5	Median	0.69278	0.5537	NaN	1	1	Median	0.77951	0.89328	37.95	2	2	Median	1.4144	1.3035	1.3875	2	2	Median	0.81571	0.8592	NaN	1	0	Median	613280000	314950000	298330000	155880000	79950000	75931000	224630000	131110000	93520000	158180000	70288000	87893000	74585000	33599000	40985000	36279	2488	34275	222959;222960;222961;222962;222963;222964	300631;300632;300633;300634;300635;300636	300636			6	
MFIGGLSWQTSPDSLR	0	Unmodified	1793.8771	0.87705468	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	2	3	3	2	87.506	84.297	2	1.33E-88	42078	160513_QHF_FH_JSI11Kac_6	241.78	227.32			0.96488	0.91302	40.435	8	5	Median	0.8102	0.69583	40.399	2	1	Median	0.8373	0.98347	21.089	2	1	Median	0.97818	0.90031	59.209	3	2	Median	1.1074	1.1546	NaN	1	1	Median	357210000	177310000	179900000	76259000	33178000	43082000	103720000	61411000	42309000	139000000	64280000	74721000	38230000	18443000	19787000	36280	4028	34276	222965;222966;222967;222968;222969;222970;222971;222972;222973;222974	300637;300638;300639;300640;300641;300642;300643;300644;300645;300646;300647;300648;300649	300639			13	
MFIGGLSWQTSPDSLRDYFSK	1	Unmodified	2434.1627	0.16273159	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.799	82.489	3	3.3507E-28	45737	160513_QHF_FH_JSI9Kac_6	149.94	118.12			0.84262	1.0503	11.035	4	0	Linear	1.1598	1.0017	NaN	1	0	Median	0.81705	0.97731	NaN	1	0	Median	1.1501	1.1012	NaN	1	0	Median	1.1652	1.2464	NaN	1	0	Median	1243900000	591350000	652500000	238220000	107930000	130290000	547550000	287410000	260140000	294820000	119710000	175110000	163260000	76289000	86975000	36281	4028	34277	222975;222976;222977;222978	300650;300651;300652;300653;300654;300655;300656;300657	300652			8	
MFIHAFYSSLLNGLK	1	Unmodified	1739.9069	0.90689824	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.716	80.432	3	0.00015959	42865	160513_QHF_FH_JSI12Kac_6	112.08	94.167			0.66394	0.67469	111.6	4	4	Median	0.37136	0.32465	NaN	1	1	Median	1.187	1.4021	NaN	1	1	Median	0.30123	0.29504	NaN	1	1	Median	2.7233	2.8502	NaN	1	1	Median	285180000	171750000	113430000	65733000	51790000	13944000	129780000	79586000	50196000	39677000	29661000	10016000	49989000	10715000	39274000	36282	3974	34278	222979;222980;222981;222982	300658;300659;300660;300661	300660			4	
MFILSDGEGK	1	Unmodified	1095.527	0.52704617	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	53.027	52.17	2	0.0056218	44534	160511_QHF_FH_JSI12i_2	53.751	44.537			0.93237	1.0349	24.37	5	2	Median	1.1879	1.0349	NaN	1	0	Median	0.89849	1.0768	7.8958	2	1	Median	0.60651	0.62294	NaN	1	1	Median	0.9631	1.0726	NaN	1	0	Median	685760000	374670000	311100000	133610000	71490000	62118000	223170000	122840000	100330000	157530000	80927000	76604000	171450000	99406000	72047000	36283	1427	34279	222983;222984;222985;222986;222987;222988	300662;300663;300664;300665;300666;300667;300668	300663			6	
MFKPQALLDK	2	Unmodified	1189.6529	0.65291539	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	2	2	52.718	51.729	2;3	1.201E-05	44055	160511_QHF_FH_JSI12i_3	121.73	107.53			1.6645	1.527	83.481	10	9	Median	1.7509	1.4382	85.476	3	3	Median	2.2283	2.7002	117.18	3	3	Median	1.0575	1.0234	124.13	2	2	Median	1.1366	1.1493	48.661	2	1	Median	3364700000	1642900000	1721800000	702080000	292600000	409480000	564450000	270140000	294310000	958880000	438790000	520090000	1139300000	641360000	497940000	36284	3965	34280	222989;222990;222991;222992;222993;222994;222995;222996;222997;222998	300669;300670;300671;300672;300673;300674;300675;300676;300677;300678;300679;300680;300681;300682;300683	300683			15	
MFKQFNK	2	Acetyl (K);Oxidation (M)	999.48479	0.48478743	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	1	1			By MS/MS	By MS/MS	16	0									2			1	1	38.978	29.613	2	0.040051	15582	160513_QHF_FH_JSI12Kac_6	49.59	29.035			0.61452	0.64404	46.162	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46575	0.46468	NaN	1	0	Median	0.81081	0.89264	NaN	1	0	Median	7535900	4423000	3112900	0	0	0	0	0	0	3194400	2123100	1071200	4341500	2299800	2041700	36285	2380	34281	222999;223000	300684	300684	2451		1	
MFKQFNK	2	Acetyl (K)	983.48987	0.48987281	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	44.636	35.55	2	0.0052244	18534	160513_QHF_FH_JSI12Kac_6	114.02	101.03			13.121	14.84	13.949	2	2	Median	NaN	NaN	NaN	0	0	Median	11.343	13.446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15.177	16.378	NaN	1	1	Median	47922000	1644300	46278000	0	0	0	23095000	1012100	22082000	0	0	0	24828000	632170	24195000	36286	2380	34281	223001;223002	300685;300686	300685	2451		2	
MFLGDAVDVFETR	0	Unmodified	1498.7126	0.71261511	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	94.193	93.701	2	9.8684E-05	80714	160511_QHF_FH_JSI12i_2	112.13	96.86			0.57133	0.68122	8.9251	2	1	Median	NaN	NaN	NaN	0	0	Median	0.51601	0.63956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63258	0.7256	NaN	1	1	Median	95469000	61138000	34332000	0	0	0	48010000	35605000	12405000	0	0	0	47459000	25532000	21927000	36287	4477	34282	223003;223004	300687;300688	300687			2	
MFLGDNAHLSIINEYLSQSYQK	1	Oxidation (M)	2586.2424	0.24243848	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	2	2	90.762	86.064	3	7.3022E-38	41458	160513_QHF_FH_JSI12Kac_6	171.5	151.06			1.0621	1.1221	11.31	6	1	Median	1.0872	0.93422	NaN	1	1	Median	0.97187	1.1518	NaN	1	0	Median	1.0721	1.0416	17.874	2	0	Median	1.0996	1.1253	4.1006	2	0	Median	340000000	168200000	171800000	51768000	35413000	16355000	15437000	7504000	7932800	94416000	44295000	50121000	178380000	80985000	97391000	36288	1600	34283	223005;223006;223007;223008;223009;223010	300689;300690;300691;300692;300693;300694;300695;300696;300697;300698;300699	300698		1276	11	
MFLGDNAHLSIINEYLSQSYQK	1	Unmodified	2570.2475	0.24752385	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	1	2	2	98.433	97.15	3;4	2.1761E-121	89125	160511_QHF_FH_JSI11i_3	276.11	268.41			1.0382	1.1111	16.005	7	1	Median	1.4214	1.183	1.454	2	1	Median	0.96203	1.1234	NaN	1	0	Median	0.92496	0.85016	16.854	2	0	Median	1.0688	1.0848	3.3918	2	0	Median	3224600000	1395200000	1829500000	525500000	175480000	350020000	242530000	99491000	143040000	798960000	414910000	384050000	1657700000	705310000	952350000	36289	1600	34283	223011;223012;223013;223014;223015;223016;223017	300700;300701;300702;300703;300704;300705;300706;300707;300708;300709;300710;300711;300712;300713;300714;300715	300702			16	
MFLLVGAPK	1	Unmodified	974.56231	0.56230947	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.74		6	1					1	4	3	3	3	3	74.058	69.799	2	0.00014996	37173	160513_QHF_FH_JSI11Kac_6	105.12	55.077			0.81351	0.84469	62.709	12	7	Median	0.80624	0.67265	38.493	3	1	Median	0.28633	0.32984	73.89	3	2	Median	1.0687	1.0268	46.592	3	2	Median	1.2093	1.263	55.915	3	2	Median	626760000	333010000	293750000	99282000	48714000	50568000	161910000	111020000	50896000	250230000	117680000	132540000	115340000	55600000	59741000	36290	859	34284	223018;223019;223020;223021;223022;223023;223024;223025;223026;223027;223028;223029	300716;300717;300718;300719;300720;300721;300722;300723;300724;300725;300726;300727;300728	300720			13	
MFLNLLSPR	0	Unmodified	1089.6005	0.60048589	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	81.169	78.258	2	0.0030732	72300	160511_QHF_FH_JSI11i_3	60.91	35.987			0.62027	0.6855	77.021	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0005	1.1818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38454	0.39763	NaN	1	1	Median	62280000	31605000	30675000	0	0	0	37053000	15558000	21496000	0	0	0	25226000	16047000	9179000	36291	103	34285	223030;223031;223032	300729;300730;300731	300729			3	
MFLPSLGHR	0	Unmodified	1056.5539	0.55387005	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			52.476	50.904	3	0.00056923	42497	160511_QHF_FH_JSI10i_3	61.679	52.091			1.0615	0.86032	40.113	3	2	Median	1.0647	0.86032	NaN	1	0	Median	0.70331	0.7978	56.393	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57874000	29835000	28039000	18035000	7554700	10480000	39839000	22280000	17559000	0	0	0	0	0	0	36292	2175	34286	223033;223034;223035	300732;300733;300734;300735	300732			4	
MFLQYYLNEQGDR	0	Unmodified	1675.7664	0.7664416	4898	Q9NPE3	NOP10	H/ACA ribonucleoprotein complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	3	1	73.643	73.413	2	2.3707E-06	65447	160511_QHF_FH_JSI11i_3	121.08	75.079			1.3364	1.2236	33.234	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2891	1.1652	39.311	3	3	Plateau	0.74933	0.73894	NaN	1	1	Median	140570000	74242000	66329000	0	0	0	0	0	0	113500000	55618000	57881000	27071000	18624000	8447300	36293	4898	34287	223036;223037;223038;223039;223040	300736;300737;300738;300739;300740	300737			5	
MFLQYYLNEQGDRVYTLK	1	Unmodified	2280.1249	0.12488952	4898	Q9NPE3	NOP10	H/ACA ribonucleoprotein complex subunit 3	yes	yes	0	0	0	1		By MS/MS			9.5	6.5			1						1		2			83.171	79.769	3	0.00029661	41564	160513_QHF_FH_JSI10Kac_6	113.56	96.871			0.90457	1.0773	40.163	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90457	1.0773	40.163	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106990000	66161000	40832000	0	0	0	106990000	66161000	40832000	0	0	0	0	0	0	36294	4898	34288	223041;223042	300741;300742	300742			2	
MFLRGDSVIVVLR	0	Unmodified	1503.8596	0.85955412	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			78.664	72.916	3	3.5858E-08	39811	160513_QHF_FH_JSI10Kac_6	106.13	83.552			1.059	1.2662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.059	1.2662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	258670000	123470000	135210000	0	0	0	258670000	123470000	135210000	0	0	0	0	0	0	36295	2002	34289	223043	300743;300744	300744			2	
MFLSFPTTK	1	Unmodified	1070.5471	0.54705333	49;2079	CON__P01966;P69905	HBA1	Hemoglobin subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	5.94	1	4	3				2	1	1	3	4	3	2	72.878	69.053	2	2.8574E-06	61936	160511_QHF_FH_JSI10i_2	124.98	115		+	0.87813	0.86937	47.888	12	5	Median	0.77608	0.66006	19.326	3	2	Median	0.62628	0.74705	38.06	4	1	Median	1.0896	1.1373	32.748	3	1	Median	1.5037	1.6244	23.041	2	1	Median	4597900000	2201700000	2396200000	924250000	489990000	434260000	832170000	511010000	321160000	1553800000	682620000	871210000	1287600000	518040000	769580000	36296	49;2079	34290	223044;223045;223046;223047;223048;223049;223050;223051;223052;223053;223054;223055	300745;300746;300747;300748;300749;300750;300751;300752;300753;300754;300755;300756;300757;300758;300759;300760;300761;300762;300763;300764	300759			20	
MFLSFPTTKTYFPHFDLSHGSAQVK	2	Acetyl (K)	2927.4316	0.43163623	49;2079	CON__P01966;P69905	HBA1	Hemoglobin subunit alpha	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	90.266	81.751	3;4	3.7705E-78	47383	160513_QHF_FH_JSI10Kac_6	208.4	195		+	0.96966	0.90087	27.755	5	0	Median	1.0519	0.90087	NaN	1	0	Median	0.96966	1.153	NaN	1	0	Median	0.74286	0.71001	3.5798	2	0	Median	1.2393	1.3036	NaN	1	0	Median	799690000	383620000	416070000	119460000	66476000	52988000	207680000	111330000	96351000	236620000	103210000	133410000	235930000	102600000	133330000	36297	49;2079	34291	223056;223057;223058;223059;223060	300765;300766;300767;300768;300769;300770;300771;300772	300772	18		8	
MFLVGLTGGIASGK	1	Unmodified	1349.7377	0.73770765	3779	Q8WVC6	DCAKD	Dephospho-CoA kinase domain-containing protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	84.494	83.772	2	3.5126E-06	72787	160511_QHF_FH_JSI12i_3	124.1	107.08			1.2256	1.1447	28.778	2	1	Median	1.1044	0.93392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.36	1.403	NaN	1	1	Median	61775000	30293000	31481000	11839000	5742700	6096800	0	0	0	0	0	0	49935000	24551000	25384000	36298	3779	34292	223061;223062	300773;300774	300774			2	
MFLVNSFLK	1	Acetyl (Protein N-term)	1139.6049	0.60490256	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	4	4	102.93	100.62	2	3.9311E-33	52430	160513_QHF_FH_JSI11Kac_6	178.08	141.06			0.96969	0.99969	7.6514	15	0	Median	1.1757	0.98947	9.9165	3	0	Median	0.87454	1.0462	4.72	4	0	Median	0.99194	0.98391	5.9538	4	0	Median	0.97498	1.0553	6.2295	4	0	Median	3273600000	1656700000	1617000000	451650000	213770000	237880000	675970000	376580000	299390000	1320900000	640880000	679980000	825150000	425420000	399730000	36299	813	34293	223063;223064;223065;223066;223067;223068;223069;223070;223071;223072;223073;223074;223075;223076;223077	300775;300776;300777;300778;300779;300780;300781;300782;300783;300784;300785;300786;300787;300788;300789;300790;300791;300792;300793;300794;300795;300796;300797;300798;300799;300800;300801;300802	300784			28	
MFLYADNEDR	0	Unmodified	1272.5445	0.54448715	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.87	44.891	2	8.9746E-07	39554	160511_QHF_FH_JSI10i_2	124.23	83.201			0.90727	0.98309	11.875	4	4	Median	1.16	1.0233	NaN	1	1	Median	0.88202	1.0995	NaN	1	1	Median	0.93324	0.94444	NaN	1	1	Median	0.72488	0.83344	NaN	1	1	Median	640220000	309510000	330710000	101390000	44471000	56919000	173840000	91571000	82273000	232310000	100500000	131810000	132680000	72968000	59707000	36300	4888	34294	223078;223079;223080;223081	300803;300804;300805;300806	300806			4	
MFLYNLTLQR	0	Unmodified	1297.6853	0.68527815	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	3	2	2	2	81.683	77.561	2	3.2785E-17	41362	160513_QHF_FH_JSI10Kac_6	161.79	145.59			0.91115	0.9788	16.214	9	2	Median	1.223	1.0152	15.763	3	1	Plateau	0.82416	0.9807	0.27384	2	0	Median	0.87759	0.85665	28.622	2	1	Median	0.87454	0.90808	23.512	2	0	Median	5226300000	2728900000	2497400000	1089600000	460430000	629180000	2454200000	1360400000	1093900000	940320000	522990000	417330000	742130000	385080000	357050000	36301	2665	34295	223082;223083;223084;223085;223086;223087;223088;223089;223090	300807;300808;300809;300810;300811;300812;300813;300814;300815;300816;300817;300818;300819;300820;300821	300821			15	
MFLYNLTLQR	0	Oxidation (M)	1313.6802	0.68019277	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	77.881	69.267	2	2.044E-08	36019	160513_QHF_FH_JSI12Kac_6	137.13	119.07			1.2471	1.1428	15.168	5	0	Median	1.2627	1.1006	NaN	1	0	Median	1.2471	1.4996	NaN	1	0	Median	1.3662	1.3109	NaN	1	0	Median	0.99965	1.0825	7.6664	2	0	Median	399060000	174710000	224350000	82353000	34496000	47857000	144360000	63832000	80529000	82986000	31391000	51595000	89358000	44988000	44370000	36302	2665	34295	223091;223092;223093;223094;223095	300822;300823;300824;300825;300826;300827;300828;300829	300827		2090	8	
MFMSFLK	1	Unmodified	902.43942	0.43941714	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.497	72.202	2	0.031164	62603	160511_QHF_FH_JSI12i_3	53.554	41.786			1.8683	1.9111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8683	1.9111	NaN	1	1	Median	41386000	21541000	19845000	0	0	0	0	0	0	0	0	0	41386000	21541000	19845000	36303	5618	34296	223096	300830	300830			1	
MFNAENGK	1	Unmodified	909.40145	0.40145173	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	3.31	4	6	2				1			4	3	3	3	12.465	11.374	2	0.0012375	9231	160511_QHF_FH_JSI11i_1	92.187	75.984			0.96615	0.88511	57.318	13	7	Median	1.0116	0.83389	74.547	4	3	Median	0.65147	0.77148	58.158	3	1	Median	1.0422	1.059	50.09	3	1	Median	0.85566	0.90043	69.765	3	2	Median	3539100000	1861100000	1678000000	712610000	285200000	427410000	773960000	424250000	349710000	872680000	504750000	367930000	1179900000	646910000	532950000	36304	1471	34297	223097;223098;223099;223100;223101;223102;223103;223104;223105;223106;223107;223108;223109	300831;300832;300833;300834;300835;300836;300837;300838;300839;300840;300841;300842;300843;300844;300845;300846;300847	300831			17	
MFNGEKINYTEGR	1	Acetyl (K)	1599.7351	0.73514147	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	57.837	47.149	2	3.2532E-16	25840	160513_QHF_FH_JSI11Kac_5	137.59	108.5			0.68263	0.77341	89.387	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3078	1.5678	9.1498	2	0	Median	0.2868	0.2859	NaN	1	0	Median	0.38382	0.40702	NaN	1	0	Median	36743000	26380000	10362000	0	0	0	10068000	4077200	5990400	23180000	19359000	3820800	3495300	2944300	551050	36305	856	34298	223110;223111;223112;223113;223114	300848;300849;300850;300851;300852;300853	300851	535		6	
MFNIISDSPSPIAAR	0	Unmodified	1617.8185	0.81847717	1185	P20936	RASA1	Ras GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	76.725	76.449	2	2.405E-07	67074	160511_QHF_FH_JSI11i_2	88.441	74.022			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4922400	4922400	0	0	0	0	0	0	0	0	0	0	4922400	4922400	0	36306	1185	34299	223115;223116	300854;300855	300854			2	
MFNYAGWK	1	Unmodified	1015.4586	0.45857268	4082	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		52.678	52.678	2	0.0094601	46643	160511_QHF_FH_JSI11i_3	56.122	30.823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36307	4082	34300	223117	300856	300856			1	
MFPAAPSPR	0	Acetyl (Protein N-term)	1014.4957	0.49568646	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	61.052	60.398	2	0.0022513	54902	160511_QHF_FH_JSI12i_1	61.679	36.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36308	3765	34301	223118	300857	300857			1	
MFPALGFGAK	1	Unmodified	1037.5368	0.536823	3387	Q86YQ8;Q9HCH3	CPNE8;CPNE5	Copine-8;Copine-5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	1	2	1	72.524	71.745	2	0.00056964	63768	160511_QHF_FH_JSI11i_3	86.794	63.775			0.68813	0.60938	22.66	6	6	Median	0.88044	0.74435	26.595	2	2	Median	0.40722	0.4777	NaN	1	1	Median	0.6984	0.68087	17.386	2	2	Median	0.55782	0.56186	NaN	1	1	Median	329030000	241470000	87554000	77169000	55455000	21714000	43696000	35031000	8665300	124780000	87835000	36941000	83386000	63153000	20233000	36309	3387	34302	223119;223120;223121;223122;223123;223124	300858;300859;300860;300861;300862;300863	300858			6	
MFPFIMEGTK	1	Unmodified	1199.5719	0.57188788	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.367	84.805	2	0.0021417	74472	160511_QHF_FH_JSI11i_2	61.65	54.755			1.187	1.1062	5.8986	2	0	Median	1.3237	1.1533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0645	1.061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62129000	23677000	38452000	19170000	8826700	10344000	0	0	0	42958000	14850000	28108000	0	0	0	36310	2485	34303	223125;223126;223127;223128	300864;300865;300866;300867;300868	300867			5	
MFPHHSITESVNYDVK	1	Unmodified	1902.8934	0.89343302	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			7									3	4	45.466	45.321	3;4	6.6969E-12	38820	160511_QHF_FH_JSI12i_3	110.38	87.376			1.2307	1.2539	25.387	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4224	1.3467	26.221	2	0	Median	1.2307	1.2539	30.099	3	2	Median	342490000	141070000	201420000	0	0	0	0	0	0	101350000	41341000	60010000	241140000	99731000	141410000	36311	3765	34304	223129;223130;223131;223132;223133;223134;223135	300869;300870;300871;300872;300873;300874;300875;300876;300877;300878	300878			10	
MFQDIGVSK	1	Unmodified	1023.5059	0.5059168	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	39.989	39.099	2	0.0017105	33208	160511_QHF_FH_JSI12i_2	76.679	66.265			1.4872	1.2721	70.716	5	2	Median	1.4872	1.2721	NaN	1	1	Median	4.3991	5.385	NaN	1	0	Median	0.93181	0.93554	NaN	1	0	Median	1.4722	1.5646	46.724	2	1	Median	510380000	258140000	252240000	80525000	44093000	36432000	35014000	8233800	26780000	197550000	126560000	70984000	197300000	79249000	118050000	36312	2453	34305	223136;223137;223138;223139;223140	300879;300880;300881;300882	300879			4	
MFQIQFHTGFVPR	0	Unmodified	1606.8079	0.8078529	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	78.141	70.24	2;3	1.495E-13	38964	160513_QHF_FH_JSI10Kac_6	170.52	146.53			0.9785	1.075	21.309	5	1	Median	1.2548	1.0936	NaN	1	0	Median	0.73125	0.85906	31.718	2	1	Median	0.9785	0.96729	NaN	1	0	Median	1.1277	1.1791	NaN	1	0	Median	345060000	188300000	156770000	64666000	25623000	39043000	208960000	125870000	83090000	38345000	23316000	15029000	33087000	13483000	19604000	36313	229	34306	223141;223142;223143;223144;223145	300883;300884;300885;300886;300887	300887			5	
MFQNFPTELLLSLAVEPLTANFHK	1	Unmodified	2759.4357	0.43565898	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.45		4	5						5	2	3	5	4	102.44	99.34	3;4	1.7786E-78	50097	160513_QHF_FH_JSI12Kac_6	214.79	207.52			1.2073	1.2134	25.831	13	8	Median	1.4807	1.2929	12.434	2	1	Median	0.78768	0.97694	9.0647	3	2	Median	0.97286	0.93261	40.791	4	2	Linear	1.2384	1.2399	8.284	4	3	Median	1348100000	654960000	693160000	323670000	143760000	179910000	584230000	314800000	269430000	193360000	76085000	117270000	246870000	120320000	126550000	36314	3891	34307	223146;223147;223148;223149;223150;223151;223152;223153;223154;223155;223156;223157;223158;223159	300888;300889;300890;300891;300892;300893;300894;300895;300896;300897;300898;300899;300900;300901;300902;300903;300904;300905	300903			18	
MFQNFPTELLLSLAVEPLTANFHK	1	Oxidation (M)	2775.4306	0.4305736	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	103.45	103.45	3	4.877E-09	90189	160511_QHF_FH_JSI12i_3	92.01	85.434			0.59128	0.60876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59128	0.60876	NaN	1	1	Median	23780000	16796000	6983500	0	0	0	0	0	0	0	0	0	23780000	16796000	6983500	36315	3891	34307	223160	300906	300906		2326	1	
MFQQTFYLLQK	1	Unmodified	1445.7377	0.73770765	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	1	1	2	1	80.047	74.299	2	1.2797E-27	39296	160513_QHF_FH_JSI11Kac_6	187.85	171.59			0.97303	1.0241	73.103	5	3	Median	2.7276	2.3837	NaN	1	1	Median	0.53329	0.64154	NaN	1	1	Median	0.90693	0.89343	108.17	2	1	Median	0.97303	1.0241	NaN	1	0	Median	182540000	81815000	100720000	36931000	9456000	27475000	14998000	9661700	5336400	78459000	37860000	40599000	52149000	24837000	27312000	36316	4214	34308	223161;223162;223163;223164;223165	300907;300908;300909;300910;300911	300907			4	
MFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK	1	Unmodified	3270.6152	0.61521584	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.9		1							6	1	2	3	1	105.74	98.736	3;4	1.1055E-124	59250	160513_QHF_FH_JSI10Kac_6	244.26	233.05			0.87862	0.94527	14.523	6	1	Median	NaN	NaN	NaN	0	0	Median	0.79766	0.94527	6.4127	2	0	Median	1.0245	0.97842	14.061	3	1	Plateau	1.16	1.2299	NaN	1	0	Median	2330200000	1280000000	1050200000	35781000	16207000	19574000	1727900000	1002000000	725830000	247910000	123500000	124410000	318650000	138290000	180350000	36317	2585	34309	223166;223167;223168;223169;223170;223171;223172	300912;300913;300914;300915;300916;300917;300918;300919;300920;300921;300922;300923	300921			12	
MFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK	1	Oxidation (M)	3286.6101	0.61013046	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	105.42	97.509	3;4	5.2961E-67	59178	160513_QHF_FH_JSI10Kac_6	181.06	165.17			0.8908	0.8987	6.6192	5	2	Linear	1.077	0.92668	NaN	1	0	Median	0.81633	0.9549	4.5683	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93264	1.0026	10.345	2	1	Median	403080000	218870000	184210000	106260000	52339000	53924000	251880000	145780000	106100000	0	0	0	44941000	20756000	24185000	36318	2585	34309	223173;223174;223175;223176;223177	300924;300925;300926;300927;300928	300927		2028;2029	5	
MFQVPDSEGGR	0	Acetyl (Protein N-term)	1263.5554	0.55538619	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.37	64.756	2	9.6005E-05	57501	160511_QHF_FH_JSI9i_1	89.08	86.681			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36319	4795	34310	223178;223179;223180;223181	300929;300930;300931;300932	300932			4	
MFSDEILLSLTRK	1	Unmodified	1551.8331	0.8330646	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	88.544	88.434	3	0.001464	76729	160511_QHF_FH_JSI12i_3	53.001	44.686			1.1234	1.1932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1234	1.1932	NaN	1	0	Median	20924000	10036000	10888000	0	0	0	0	0	0	0	0	0	20924000	10036000	10888000	36320	3272	34311	223182	300933	300933			1	
MFSEQAAQR	0	Acetyl (Protein N-term)	1108.4971	0.49714303	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.895	41.242	2	0.00019371	37224	160511_QHF_FH_JSI11i_1	86.833	80.009			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36321	1638	34312	223183;223184;223185	300934;300935;300936	300934			3	
MFSFNMFDHPIPR	0	Acetyl (Protein N-term);Oxidation (M)	1695.7538	0.75376842	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	96.201	95.833	2	0.00055557	82481	160511_QHF_FH_JSI12i_2	72.006	62.318			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36322	3902	34313	223186;223187;223188	300937;300938;300939	300937		2337	3	
MFSFNMFDHPIPR	0	Acetyl (Protein N-term)	1679.7589	0.7588538	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1	1	1	1	1	98.897	96.905	2	4.5719E-31	89362	160511_QHF_FH_JSI11i_2	158.56	151.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36323	3902	34313	223189;223190;223191;223192	300940;300941;300942;300943	300942			4	
MFSKAFDSGIIPMEFVNK	2	Acetyl (K)	2102.0217	0.021670005	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		93.951	84.569	3	0.0003445	47756	160513_QHF_FH_JSI11Kac_6	96.143	80.377			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30258000	30258000	0	0	0	0	0	0	0	30258000	30258000	0	0	0	0	36324	1798	34314	223193	300944	300944	1814		1	
MFSLDSFR	0	Unmodified	1001.4641	0.46405199	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		41.529	31.958	2	0.045055	17552	160513_QHF_FH_JSI11Kac_6	45.394	12.611			0.2678	0.26532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2678	0.26532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15866000	12169000	3696800	0	0	0	0	0	0	15866000	12169000	3696800	0	0	0	36325	3221	34315	223194	300945	300945			1	
MFSSSAK	1	Acetyl (Protein N-term)	798.35819	0.35818993	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	32.756	32.154	1;2	0.012398	28778	160511_QHF_FH_JSI12i_1	37.558	33.705			0.96616	1.0079	8.796	8	0	Median	1.2407	1.0004	5.7595	2	0	Median	0.87999	1.0394	3.7274	2	0	Median	1.0902	1.0598	7.7374	2	0	Median	0.83577	0.87867	2.8062	2	0	Median	4648300000	2360100000	2288300000	1296300000	618460000	677840000	1141900000	606860000	535050000	1232600000	591000000	641630000	977470000	543740000	433730000	36326	1979	34316	223195;223196;223197;223198;223199;223200;223201;223202	300946;300947;300948;300949;300950	300947			5	
MFSSSAK	1	Acetyl (Protein N-term);Oxidation (M)	814.3531	0.35310455	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	10.3	3.81	1			1	5						3	2	2	22.492	16.313	1;2	0.003837	28809	160511_QHF_FH_JSI11i_1	58.917	52.53			1.0529	1.1359	15.834	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0436	1.2079	8.7001	2	0	Median	1.0529	0.97649	NaN	1	0	Median	1.1943	1.2777	20.783	2	0	Median	41390000	11163000	30227000	0	0	0	8143000	4853700	3289300	24547000	1703100	22844000	8699400	4606100	4093300	36327	1979	34316	223203;223204;223205;223206;223207;223208;223209	300951;300952;300953;300954;300955;300956;300957;300958	300951		1646	7	
MFSSSAK	1	Unmodified	756.34763	0.34762524	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	9.1135	8.7095	2	0.0084038	6506	160511_QHF_FH_JSI9i_2	83.614	73.865			1.1251	1.1837	61.613	6	2	Median	0.87566	0.72584	NaN	1	0	Median	1.1524	1.4206	NaN	1	0	Median	1.2089	1.2546	NaN	1	0	Median	1.0985	1.1169	90.514	3	2	Median	3233100000	1566800000	1666300000	423720000	218890000	204820000	556630000	255870000	300760000	994080000	472650000	521430000	1258600000	619370000	639250000	36328	1979	34316	223210;223211;223212;223213;223214;223215	300959;300960;300961;300962;300963;300964;300965;300966	300961			8	
MFSSTDR	0	Unmodified	842.35925	0.35925256	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	10.503	10.03	2	0.017878	7507	160511_QHF_FH_JSI11i_2	60.799	42.951			0.84344	0.8579	23.63	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1468	1.3744	NaN	1	0	Median	0.84344	0.8579	NaN	1	0	Median	0.93948	1.0534	NaN	1	0	Median	299810000	133910000	165900000	0	0	0	63451000	26100000	37351000	140490000	58384000	82102000	95876000	49428000	46448000	36329	4157	34317	223216;223217;223218	300967;300968;300969	300968			3	
MFSVESLER	0	Acetyl (Protein N-term)	1138.5329	0.53285983	3345	Q86VS8	HOOK3	Protein Hook homolog 3	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	85.721	85.158	2	0.011002	77624	160511_QHF_FH_JSI11i_1	46.462	33.503			1.2978	1.2778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2978	1.2778	NaN	1	0	Median	11180000	4174300	7005900	0	0	0	0	0	0	0	0	0	11180000	4174300	7005900	36330	3345	34318	223219;223220;223221	300970;300971;300972	300970			3	
MFSWVSK	1	Acetyl (Protein N-term)	925.43677	0.4367746	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	90.853	90.435	2	0.0041644	82203	160511_QHF_FH_JSI11i_1	57.281	46.867			1.0559	1.0125	14.225	4	0	Median	1.1217	0.94607	NaN	1	0	Median	0.99806	1.0837	NaN	1	0	Median	1.117	1.0843	NaN	1	0	Median	0.81616	0.80361	NaN	1	0	Median	46148000	23016000	23132000	8383000	4077500	4305500	11195000	5753900	5441400	15640000	6510900	9128700	10930000	6673600	4256700	36331	4727	34319	223222;223223;223224;223225;223226	300973;300974;300975;300976;300977;300978;300979;300980;300981	300973			9	
MFTAGIDLMDMASDILQPK	1	Unmodified	2095.9992	0.99922	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							1	3	4	4	102.87	102.79	2;3	6.1368E-85	90546	160511_QHF_FH_JSI11i_2	205.95	196.2			1.0725	1.0986	21.599	12	7	Median	1.1914	1.0167	NaN	1	0	Median	0.86504	1.0723	35.101	3	1	Median	1.1859	1.1135	21.488	4	3	Median	1.103	1.1861	9.92	4	3	Median	2084700000	943110000	1141600000	174100000	79518000	94579000	245020000	141300000	103710000	1237800000	529510000	708310000	427790000	192780000	235010000	36332	2340	34320	223227;223228;223229;223230;223231;223232;223233;223234;223235;223236;223237;223238	300982;300983;300984;300985;300986;300987;300988;300989;300990;300991;300992;300993;300994;300995;300996	300992			15	
MFTILER	0	Unmodified	908.47897	0.47897377	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.292	56.292	2	0.046383	49875	160511_QHF_FH_JSI11i_3	48.346	15.563			1.6862	1.5523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6862	1.5523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40965000	15063000	25902000	0	0	0	0	0	0	40965000	15063000	25902000	0	0	0	36333	433	34321	223239	300997	300997			1	
MFTLLDVVNRK	1	Unmodified	1334.738	0.738042	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		79.273	78.367	3	5.9374E-05	69980	160511_QHF_FH_JSI11i_3	90.306	84.586			0.80913	0.85368	87.414	6	6	Median	0.99561	0.81944	135.09	2	2	Median	0.62904	0.73249	103.79	2	2	Median	0.99493	0.92202	93.033	2	2	Median	NaN	NaN	NaN	0	0	Median	224340000	123180000	101160000	59544000	29022000	30522000	61002000	38311000	22691000	103800000	55847000	47949000	0	0	0	36334	3146	34322	223240;223241;223242;223243;223244;223245	300998;300999;301000;301001;301002;301003	300999			6	
MFTQQQPQELAR	0	Unmodified	1475.7191	0.71909747	4019	Q96CX2	KCTD12	BTB/POZ domain-containing protein KCTD12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	37.23	36.185	2	2.5505E-05	31029	160511_QHF_FH_JSI11i_2	134.68	122.63			0.76171	0.73453	84.616	4	4	Median	0.93963	0.81792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35472	0.33485	NaN	1	1	Median	1.2078	1.3002	95.966	2	2	Median	67212000	33837000	33376000	19219000	7725600	11493000	0	0	0	16078000	11063000	5014800	31915000	15047000	16868000	36335	4019	34323	223246;223247;223248;223249;223250	301004;301005;301006;301007;301008	301007			5	
MFTSTGSSGLYK	1	Unmodified	1277.5962	0.59618837	3596	Q8NBM4	UBAC2	Ubiquitin-associated domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		39.086	38.264	2	0.00065317	32757	160511_QHF_FH_JSI11i_2	81.338	52.939			1.8244	2.0813	17.311	3	3	Plateau	1.8244	1.5887	NaN	1	1	Median	1.4259	1.7201	NaN	1	1	Median	2.221	2.2133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110270000	34952000	75318000	24326000	7647500	16678000	57031000	19586000	37446000	28913000	7718800	21194000	0	0	0	36336	3596	34324	223251;223252;223253	301009;301010;301011;301012	301011			4	
MFVDLNPDSDK	1	Unmodified	1279.5755	0.57545293	1330;1697	P29992;P50148	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0		By MS/MS			1	0	1										1			56.835	56.441	2	0.0098532	50800	160511_QHF_FH_JSI10i_1	48.028	38.845			4.0073	4.6652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4.0073	4.6652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148940000	38269000	110670000	0	0	0	148940000	38269000	110670000	0	0	0	0	0	0	36337	1330;1697	34325	223254	301013	301013			1	
MFVEEVSTGQECGVVLDK	1	Unmodified	2025.9387	0.93872824	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.095	68.491	2	1.0794E-32	62396	160511_QHF_FH_JSI12i_1	154.07	123.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36338	1664	34326	223255	301014	301014			1	
MFVELNNLLNTTPDRAEQGK	1	Unmodified	2289.1423	0.1423305	2289	Q0PNE2	ELP6	Elongator complex protein 6	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		84.055	84.055	3	0.035438	75038	160511_QHF_FH_JSI11i_3	31.111	14.805			0.99683	0.95067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99683	0.95067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36380000	16821000	19559000	0	0	0	0	0	0	36380000	16821000	19559000	0	0	0	36339	2289	34327	223256	301015	301015			1	
MFVGGLSWDTSK	1	Unmodified	1326.6278	0.62782285	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.63	2	4	4					1	5	3	5	5	3	74.694	70.903	2	7.0008E-23	63288	160511_QHF_FH_JSI9i_2	177.06	164.03			0.91077	0.98096	46.382	16	4	Median	1.3016	1.0418	11.432	3	0	Median	0.87021	1.0751	36.034	5	2	Median	0.85722	0.80609	67.241	5	2	Median	0.78468	0.82352	19.089	3	0	Median	4083400000	2056600000	2026900000	811830000	351930000	459900000	1142500000	599880000	542650000	1329600000	686570000	643010000	799500000	418190000	381310000	36340	4308	34328	223257;223258;223259;223260;223261;223262;223263;223264;223265;223266;223267;223268;223269;223270;223271;223272	301016;301017;301018;301019;301020;301021;301022;301023;301024;301025;301026;301027;301028;301029;301030;301031;301032;301033;301034;301035;301036;301037;301038;301039;301040;301041;301042;301043;301044;301045;301046;301047;301048;301049;301050;301051	301033			36	
MFVGGLSWDTSK	1	Oxidation (M)	1342.6227	0.62273747	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	71.895	62.572	2	0.0013249	33266	160513_QHF_FH_JSI9Kac_6	73.781	61.734			1.2779	1.3116	23.199	4	0	Median	1.9107	1.6213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6375	1.5727	NaN	1	0	Median	0.97321	1.0703	3.0618	2	0	Median	67619000	30475000	37144000	17148000	8656100	8491800	0	0	0	30164000	10459000	19704000	20307000	11360000	8947300	36341	4308	34328	223273;223274;223275;223276	301052;301053;301054;301055;301056	301054		2439	5	
MFVGGLSWDTSKK	2	Unmodified	1454.7228	0.72278587	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	61.606	60.71	2;3	2.2898E-05	52129	160511_QHF_FH_JSI12i_3	95.183	87.813			0.65046	0.61589	47.918	4	1	Median	0.4996	0.40569	NaN	1	1	Median	0.84686	1.0041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59433	0.61589	52.617	2	0	Median	601550000	360980000	240570000	81965000	53908000	28057000	94525000	47484000	47041000	0	0	0	425060000	259590000	165470000	36342	4308	34329	223277;223278;223279;223280	301057;301058;301059;301060	301060			4	
MFVGQVPR	0	Unmodified	932.49021	0.49020716	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	38.714	37.845	2	0.00056343	32341	160511_QHF_FH_JSI12i_2	104.11	73.393			1.2127	1.1899	15.966	8	0	Median	1.5494	1.294	24.652	2	0	Median	0.98447	1.1666	28.265	2	0	Median	1.29	1.2657	4.2559	2	0	Median	1.0417	1.1044	6.0572	2	0	Median	1514100000	715840000	798290000	268360000	109250000	159100000	299000000	151250000	147750000	591320000	278880000	312440000	355460000	176460000	179000000	36343	3897	34330	223281;223282;223283;223284;223285;223286;223287;223288	301061;301062;301063;301064;301065;301066;301067;301068;301069;301070;301071;301072;301073	301062			13	
MFVKGAPEGVIDR	1	Acetyl (K)	1459.7493	0.74933497	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	71.401	60.734	2	0.0020017	30420	160513_QHF_FH_JSI10Kac_5	74.944	60.525			2.5613	2.5383	48.444	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84214	0.98022	NaN	1	0	Median	2.5613	2.5383	NaN	1	0	Median	1.212	1.3464	NaN	1	0	Median	35342000	13323000	22019000	0	0	0	4308300	2258100	2050300	26940000	9507300	17433000	4093200	1557900	2535300	36344	1103	34331	223289;223290;223291;223292	301074;301075;301076	301076	955		3	
MFVKGAPEGVIDR	1	Acetyl (K);Oxidation (M)	1475.7442	0.74424959	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	1	0	1	1			By MS/MS		15	0								1				1		64.145	53.225	2	0.019625	28895	160513_QHF_FH_JSI11Kac_5	56.359	30.7			0.32572	0.30844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32572	0.30844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2303900	2014900	289000	0	0	0	0	0	0	2303900	2014900	289000	0	0	0	36345	1103	34331	223293	301077	301077	955	743	1	
MFVLDEADEMLSR	0	Unmodified	1554.7058	0.70581517	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.802	6	6	5							6	4	4	3	92.761	92.295	2	8.8654E-83	79517	160511_QHF_FH_JSI12i_2	252.3	224.29			1.0414	1.0047	18.611	15	2	Median	1.1654	0.9656	27.009	4	2	Median	0.78616	0.93657	7.148	4	0	Median	1.1407	1.1349	12.827	4	0	Linear	0.80091	0.88169	24.282	3	0	Plateau	7266800000	3253600000	4013200000	1253700000	413930000	839780000	1727700000	913790000	813930000	2468600000	1085400000	1383300000	1816700000	840480000	976240000	36346	1917;2519	34332	223294;223295;223296;223297;223298;223299;223300;223301;223302;223303;223304;223305;223306;223307;223308;223309;223310	301078;301079;301080;301081;301082;301083;301084;301085;301086;301087;301088;301089;301090;301091;301092;301093;301094;301095;301096;301097;301098;301099;301100;301101;301102;301103;301104;301105;301106;301107;301108;301109;301110;301111;301112;301113;301114;301115;301116	301085			39	
MFVLDEADEMLSR	0	Oxidation (M)	1570.7007	0.7007298	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	4.1	5	12						2		3	6	5	5	75.023	73.277	2	6.7725E-05	71285	160511_QHF_FH_JSI9i_2	113.63	106.97			1.0805	1.1377	24.729	18	7	Median	1.3822	1.1677	29.279	3	2	Median	0.83316	1.0263	15.384	5	4	Median	1.0672	1.0939	29.343	5	0	Median	1.3044	1.3468	24.88	5	1	Median	1112000000	548770000	563270000	157050000	65017000	92038000	380680000	229180000	151500000	282880000	138000000	144880000	291430000	116570000	174860000	36347	1917;2519	34332	223311;223312;223313;223314;223315;223316;223317;223318;223319;223320;223321;223322;223323;223324;223325;223326;223327;223328;223329	301117;301118;301119;301120;301121;301122;301123;301124;301125;301126;301127;301128;301129;301130;301131;301132;301133;301134;301135;301136;301137;301138;301139;301140	301128		1591;1592	24	
MFVSDFRK	1	Unmodified	1028.5113	0.51133653	523	O75419	CDC45	Cell division control protein 45 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		36.801	35.825	3	0.024792	29154	160511_QHF_FH_JSI9i_3	34.932	21.239			4.5822	4.2165	99.488	3	3	Plateau	1.1656	0.96975	NaN	1	1	Median	0.55795	0.64139	NaN	1	1	Median	4.5822	4.2553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	169600000	63777000	105820000	72182000	28123000	44059000	50634000	25706000	24928000	46783000	9947600	36835000	0	0	0	36348	523	34333	223330;223331;223332	301141;301142;301143	301143			3	
MFVSSSGLPPSPVPSPR	0	Unmodified	1740.8869	0.88689108	3253	Q7Z309	FAM122B	Protein FAM122B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	3	2	1	69.494	68.614	2	1.4301E-23	59701	160511_QHF_FH_JSI11i_2	131.69	117.53			1.1276	1.1056	12.715	5	4	Median	1.341	1.1056	NaN	1	1	Median	0.97269	1.1901	23.096	2	2	Median	1.1722	1.1688	NaN	1	1	Median	0.96476	1.0546	NaN	1	0	Median	124900000	61559000	63339000	25806000	12513000	13293000	46167000	27733000	18433000	25716000	9782800	15933000	27210000	11530000	15680000	36349	3253	34334	223333;223334;223335;223336;223337;223338;223339	301144;301145;301146;301147;301148;301149;301150;301151;301152	301149			9	
MFWNLMPFTTR	0	Unmodified	1442.6839	0.68389794	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.131	83.803	2	1.2223E-26	48839	160513_QHF_FH_JSI10Kac_6	175.73	160.76			0.98961	1.069	28.633	4	0	Median	0.93969	0.8132	NaN	1	0	Median	0.90372	1.0498	NaN	1	0	Median	1.6639	1.6258	NaN	1	0	Median	1.0422	1.0885	NaN	1	0	Median	335430000	177940000	157490000	63713000	32683000	31030000	192940000	109600000	83343000	44774000	18538000	26236000	34004000	17124000	16880000	36350	1750	34335	223340;223341;223342;223343	301153;301154;301155;301156;301157;301158	301158			6	
MFYAHFVLSK	1	Unmodified	1241.6267	0.62670064	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	4	3	6	4	65.373	61.021	2;3	1.4633E-07	33043	160513_QHF_FH_JSI11Kac_6	107.55	97.183			1.1979	1.1319	67.797	17	13	Median	1.5273	1.2898	79.486	4	3	Median	0.82069	0.98093	108.3	3	3	Plateau	1.0012	0.97484	56.963	6	4	Median	0.92468	0.96341	58.841	4	3	Median	4590700000	2237200000	2353500000	1031400000	448310000	583110000	1379400000	684670000	694770000	1198600000	610610000	587960000	981230000	493600000	487630000	36351	396	34336	223344;223345;223346;223347;223348;223349;223350;223351;223352;223353;223354;223355;223356;223357;223358;223359;223360	301159;301160;301161;301162;301163;301164;301165;301166;301167;301168;301169;301170;301171;301172;301173;301174;301175;301176;301177;301178;301179	301164			20	
MFYAHFVLSK	1	Acetyl (Protein N-term)	1283.6373	0.63726532	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	1	0	0			By MS/MS		16	0									1			1		88.77	79.432	2	1.8329E-07	44374	160513_QHF_FH_JSI11Kac_6	64.297	54.065			0.94529	0.89981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94529	0.89981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49620000	25856000	23764000	0	0	0	0	0	0	49620000	25856000	23764000	0	0	0	36352	396	34336	223361	301180	301180			1	
MFYAHFVLSK	1	Oxidation (M)	1257.6216	0.62161526	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	2	3	4	64.358	55.051	2;3	2.1201E-05	29273	160513_QHF_FH_JSI9Kac_6	104.2	82.114			1.2516	1.0746	75.072	13	12	Median	0.75928	0.63587	67.582	4	3	Median	2.0401	2.369	38.615	2	2	Median	0.81553	0.78773	68.652	3	3	Plateau	1.1108	1.2057	74.688	4	4	Median	534020000	260780000	273240000	155890000	87380000	68508000	83748000	28763000	54985000	109140000	57635000	51505000	185250000	87002000	98244000	36353	396	34336	223362;223363;223364;223365;223366;223367;223368;223369;223370;223371;223372;223373;223374	301181;301182;301183;301184;301185;301186;301187;301188;301189;301190;301191;301192;301193;301194;301195	301186		160	15	
MFYIPQRPYMSVGSLR	0	Unmodified	1943.975	0.97499458	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			78.821	73.073	3	0.00081919	39851	160513_QHF_FH_JSI10Kac_6	63.631	54.216			2.7091	3.2693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.7091	3.2693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269710000	55830000	213880000	0	0	0	269710000	55830000	213880000	0	0	0	0	0	0	36354	1406	34337	223375	301196	301196			1	
MGAGIAVLFK	1	Unmodified	1005.5681	0.56812313	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.526	75.751	2	0.00045126	65644	160511_QHF_FH_JSI12i_3	92.47	79.482			0.94833	0.88924	5.1137	4	0	Median	1.1252	0.91037	NaN	1	0	Median	0.75483	0.846	NaN	1	0	Median	1.031	0.94965	NaN	1	0	Median	0.8723	0.86859	NaN	1	0	Median	149330000	76521000	72809000	29576000	12737000	16839000	20096000	11120000	8976200	38818000	17622000	21196000	60841000	35043000	25798000	36355	5647	34338	223376;223377;223378;223379	301197;301198	301198			2	
MGAGLGHGMDR	0	Oxidation (M)	1116.4804	0.48044711	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	0.223		1	18							6	7	5	1	13.248	12.697	2;3	0.00027473	6855	160511_QHF_FH_JSI10i_3	81.95	78.016			0.98894	0.92539	51.494	19	1	Median	1.8854	1.5226	38.307	6	1	Median	0.78177	0.91207	36.333	7	0	Median	1.839	1.7578	75.003	5	0	Median	0.68227	0.68714	NaN	1	0	Median	1741300000	789400000	951950000	445880000	169940000	275940000	794180000	402180000	392000000	420420000	176330000	244090000	80854000	40943000	39911000	36356	1765	34339	223380;223381;223382;223383;223384;223385;223386;223387;223388;223389;223390;223391;223392;223393;223394;223395;223396;223397;223398	301199;301200;301201;301202;301203;301204;301205;301206;301207;301208;301209;301210	301204		1444;1445	12	
MGAGLGHGMDR	0	Unmodified	1100.4855	0.48553248	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.39		3	11						2	4	7	2	3	18.534	16.978	2;3	1.4739E-07	13869	160511_QHF_FH_JSI10i_3	123.86	107.08			1.1842	1.1232	55.775	16	1	Median	1.8461	1.5069	39.899	4	0	Median	1.0318	1.2649	60.501	7	1	Median	1.2084	1.1551	2.5134	2	0	Median	0.50558	0.51628	12.058	3	0	Median	7294900000	3601100000	3693700000	1030400000	327620000	702770000	2423500000	1168500000	1255000000	2317400000	1233000000	1084400000	1523600000	871980000	651620000	36357	1765	34339	223399;223400;223401;223402;223403;223404;223405;223406;223407;223408;223409;223410;223411;223412;223413;223414	301211;301212;301213;301214;301215;301216;301217;301218;301219;301220;301221;301222;301223;301224;301225;301226;301227;301228;301229;301230	301217			19	
MGAGMGFGLER	0	Unmodified	1124.5107	0.5106846	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	54.125	53.224	2	1.4769E-09	47140	160511_QHF_FH_JSI11i_3	134.26	119.11			1.0177	1.049	26.872	8	0	Median	1.6344	1.3411	16.667	2	0	Median	0.93242	1.1117	24.727	2	0	Median	1.0539	1.049	12.208	2	0	Median	0.69803	0.7408	18.21	2	0	Median	6635100000	3356800000	3278300000	780030000	294980000	485050000	1383300000	790360000	592980000	2724500000	1310600000	1413900000	1747200000	960870000	786370000	36358	1765	34340	223415;223416;223417;223418;223419;223420;223421;223422	301231;301232;301233;301234;301235;301236;301237;301238;301239;301240;301241;301242;301243;301244	301232			14	
MGAGSSIIENLQSQLK	1	Unmodified	1674.8611	0.86107026	2103	P82094	TMF1	TATA element modulatory factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.725	82.725	2	4.1687E-20	73895	160511_QHF_FH_JSI11i_3	218.01	192.63			0.85617	0.81177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85617	0.81177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24662000	13914000	10748000	0	0	0	0	0	0	24662000	13914000	10748000	0	0	0	36359	2103	34341	223423;223424	301245;301246	301245			2	
MGAHAGKHSSP	1	Acetyl (K)	1120.5084	0.50837642	5060	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	8.0217	0.70721	2;3	4.0849E-07	2833	160513_QHF_FH_JSI10Kac_6	113.71	97.504			0.80824	0.96245	18.215	7	0	Median	1.3773	1.1831	0.92945	2	0	Median	0.80592	0.95789	0.67114	2	0	Median	1.2465	1.2078	NaN	1	0	Median	0.73445	0.80489	9.4005	2	0	Median	92114000	48749000	43366000	10903000	4928300	5974900	44329000	25119000	19210000	19104000	8023200	11081000	17778000	10678000	7099900	36360	5060	34342	223425;223426;223427;223428;223429;223430;223431	301247;301248;301249;301250;301251;301252	301251	3302		6	
MGAKAMNWMSGK	2	Acetyl (K)	1352.6039	0.60393306	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.798	58.193	2	2.7285E-05	31575	160513_QHF_FH_JSI11Kac_6	105.46	88.435			2.2157	2.1555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2157	2.1555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11747000	3809400	7937300	0	0	0	0	0	0	11747000	3809400	7937300	0	0	0	36361	897	34343	223432	301253	301253	640		1	
MGANNLER	0	Oxidation (M)	919.41816	0.41816443	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	13.787	13.21	2	0.0051914	10460	160511_QHF_FH_JSI11i_2	72.485	48.512			0.83862	0.95057	10.586	4	0	Median	1.2465	1.065	NaN	1	0	Median	0.76846	0.96466	NaN	1	0	Median	0.91517	0.93669	NaN	1	0	Median	0.74398	0.82379	NaN	1	0	Median	553190000	291010000	262170000	137780000	59676000	78104000	105680000	51742000	53940000	183760000	102730000	81035000	125960000	76869000	49092000	36362	1765	34344	223433;223434;223435;223436	301254;301255;301256;301257;301258;301259;301260;301261	301258		1446	8	
MGANNLER	0	Unmodified	903.42325	0.4232498	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.79		4	1					2		1	2	2	2	15.19	12.206	2	7.2141E-05	10386	160511_QHF_FH_JSI12i_2	133.12	86.69			0.98386	1.0116	16.516	7	0	Median	1.3156	1.1028	NaN	1	0	Median	0.85617	1.0268	2.1154	2	0	Median	1.1094	1.12	16.055	2	0	Median	0.7995	0.85501	22.869	2	0	Median	3252700000	1540000000	1712700000	560660000	212660000	348000000	645960000	340620000	305340000	1241600000	546170000	695410000	804540000	440540000	364000000	36363	1765	34344	223437;223438;223439;223440;223441;223442;223443	301262;301263;301264;301265;301266;301267;301268	301262			7	
MGANSLER	0	Unmodified	876.41235	0.41235077	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.22	2	4	2				3	3		1	4	4	5	17.236	13.19	2	0.0016104	11708	160511_QHF_FH_JSI11i_1	87.181	50.087			0.90488	1.0117	22.24	14	2	Median	1.8213	1.4922	NaN	1	0	Median	0.90179	1.0762	12.744	4	0	Median	1.1538	1.1723	6.196	4	1	Linear	0.68087	0.7529	7.6973	5	1	Median	8865200000	4243400000	4621800000	1274700000	483540000	791200000	1540000000	710320000	829680000	3436800000	1472900000	1963900000	2613600000	1576600000	1037000000	36364	1765	34345	223444;223445;223446;223447;223448;223449;223450;223451;223452;223453;223454;223455;223456;223457	301269;301270;301271;301272;301273;301274;301275;301276;301277;301278;301279;301280;301281;301282	301270			14	
MGANSLER	0	Oxidation (M)	892.40727	0.40726539	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		14.827	14.255	2	0.0066408	11235	160511_QHF_FH_JSI11i_2	68.787	48.232			0.9292	0.86317	41.465	4	0	Median	1.5143	1.29	58.541	2	0	Median	0.66383	0.83131	NaN	1	0	Median	0.86627	0.87371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1043100000	495730000	547350000	355160000	130370000	224780000	315350000	174390000	140960000	372570000	190970000	181610000	0	0	0	36365	1765	34345	223458;223459;223460;223461	301283;301284;301285;301286;301287;301288	301285		1447	6	
MGAPESGLAEYLFDK	1	Unmodified	1626.76	0.75995923	794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	91.179	90.485	2;3	0.00026486	78085	160511_QHF_FH_JSI12i_2	71.888	51.1			0.68767	0.72388	88.204	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3369	1.3506	NaN	1	1	Median	0.35371	0.38797	NaN	1	1	Median	78431000	40073000	38358000	0	0	0	0	0	0	70018000	33786000	36232000	8412800	6286500	2126300	36366	794	34346	223462;223463;223464;223465	301289;301290;301291;301292;301293	301290			5	
MGAVFMDAPVSGGVGAAR	0	Unmodified	1691.8123	0.81234593	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.655	3	8	3							2	3	5	4	69.302	68.726	2;3	2.0579E-16	59458	160511_QHF_FH_JSI12i_3	163.99	136.66			1.0237	1.0327	40.684	11	4	Median	1.3488	1.16	16.434	2	1	Median	1.01	1.2083	35.112	2	0	Median	0.88966	0.89374	24.932	4	2	Median	1.1845	1.193	69.045	3	1	Plateau	735430000	326350000	409080000	150450000	53856000	96592000	79553000	41074000	38479000	341910000	148890000	193020000	163510000	82527000	80986000	36367	1380	34347	223466;223467;223468;223469;223470;223471;223472;223473;223474;223475;223476;223477;223478;223479	301294;301295;301296;301297;301298;301299;301300;301301;301302;301303;301304;301305	301304			11	
MGAYHTIELEPNR	0	Unmodified	1529.7297	0.72966216	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	41.001	40.931	2;3	3.2614E-09	35015	160511_QHF_FH_JSI12i_3	125.75	111.06			0.83005	0.77886	21.682	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88307	0.82941	8.8936	2	1	Median	0.57772	0.57901	NaN	1	0	Median	228950000	133800000	95147000	0	0	0	0	0	0	138260000	81311000	56950000	90684000	52487000	38197000	36368	4387	34348	223480;223481;223482;223483	301306;301307;301308;301309;301310;301311	301311			6	
MGEAIETTQQLYPSLLER	0	Unmodified	2078.0354	0.035405813	4236	Q96S59	RANBP9	Ran-binding protein 9	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.113	83.018	2	0.00018216	71796	160511_QHF_FH_JSI12i_2	72.089	50.458			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36369	4236	34349	223484	301312	301312			1	
MGEDMHTIGFGIYEVPEELSGQTNIHLSK	1	Unmodified	3231.5216	0.5216498	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.319	98.339	4	0.0095484	85192	160511_QHF_FH_JSI12i_3	30.013	27.818			0.75901	0.78375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75901	0.78375	NaN	1	1	Median	46656000	34398000	12257000	0	0	0	0	0	0	0	0	0	46656000	34398000	12257000	36370	1122	34350	223485	301313	301313			1	
MGEPSQDPK	1	Unmodified	987.43315	0.43314579	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.6285	9.4471	2	0.024179	7162	160511_QHF_FH_JSI11i_1	41.448	24.063			0.76736	0.81688	3.5891	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72118	0.83788	NaN	1	0	Median	0.8165	0.79641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102330000	59505000	42821000	0	0	0	48904000	27382000	21523000	53422000	32124000	21299000	0	0	0	36371	681	34351	223486;223487	301314	301314			1	
MGESDDSILR	0	Unmodified	1121.5023	0.50228798	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.3	5	2					2			3	3	1	2	35.938	33.104	2	4.2895E-05	29762	160511_QHF_FH_JSI11i_1	94.309	83.493			0.86135	1.0383	47.623	9	1	Median	1.7297	1.4419	83.98	3	1	Median	0.86135	1.0383	14.856	3	0	Median	1.1522	1.1298	NaN	1	0	Median	0.64193	0.6886	7.5882	2	0	Median	5856100000	2948200000	2907900000	1969400000	822530000	1146800000	1673800000	841970000	831870000	1384900000	777040000	607830000	828000000	506690000	321310000	36372	2059	34352	223488;223489;223490;223491;223492;223493;223494;223495;223496	301315;301316;301317;301318;301319;301320;301321;301322;301323;301324;301325	301315			11	
MGESDDSILR	0	Oxidation (M)	1137.4972	0.49720261	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	1	0	By MS/MS				13	0						1				1				18.206	0.39481	2	0.0098737	5933	160513_QHF_FH_JSI9Kac_3	52.579	40.857			1.8068	1.4175	NaN	1	0	Median	1.8068	1.4175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15287000	5547400	9739700	15287000	5547400	9739700	0	0	0	0	0	0	0	0	0	36373	2059	34352	223497	301326	301326		1718	1	
MGFAVLLVNYR	0	Unmodified	1281.6904	0.69036353	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	87.288	79.015	2	5.3259E-15	45293	160513_QHF_FH_JSI10Kac_6	157.54	135.45			1.1173	1.2104	39.452	4	0	Median	1.5656	1.333	NaN	1	0	Median	1.0349	1.2417	NaN	1	0	Median	1.2062	1.1799	NaN	1	0	Median	0.54296	0.57146	NaN	1	0	Median	735660000	318470000	417190000	122340000	40687000	81650000	476150000	207150000	268990000	89764000	41799000	47965000	47415000	28831000	18584000	36374	1040	34353	223498;223499;223500;223501;223502	301327;301328;301329;301330;301331;301332;301333;301334	301333			8	
MGFEPLAYR	0	Unmodified	1082.5219	0.52190122	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	61.23	60.454	2	1.0109E-12	52377	160511_QHF_FH_JSI11i_2	169.06	146.93			1.0872	1.0997	42.145	7	0	Median	1.6519	1.3969	12.119	2	0	Median	0.92635	1.1103	NaN	1	0	Median	1.1098	1.0827	2.2086	2	0	Median	0.5096	0.5286	8.6223	2	0	Median	6026700000	3010200000	3016500000	931360000	329950000	601410000	1584300000	844170000	740100000	2220300000	1022600000	1197700000	1290800000	813460000	477350000	36375	1395	34354	223503;223504;223505;223506;223507;223508;223509	301335;301336;301337;301338;301339;301340;301341;301342;301343;301344	301341			10	
MGFFLSLHQR	0	Unmodified	1234.6281	0.62809762	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	73.621	64.908	3	3.942E-18	35679	160513_QHF_FH_JSI10Kac_6	166.09	156.73			0.93948	1.0049	44.447	4	0	Median	1.7022	1.4743	NaN	1	0	Median	0.59557	0.70325	NaN	1	0	Median	1.4753	1.4359	NaN	1	0	Median	0.59827	0.64858	NaN	1	0	Median	280660000	170050000	110610000	46896000	18269000	28627000	201810000	135760000	66043000	14728000	6210200	8517900	17231000	9810700	7420500	36376	5553	34355	223510;223511;223512;223513	301345;301346;301347;301348	301348			2	
MGFGGTLEIK	1	Unmodified	1051.5372	0.53721693	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.311	60.997	2	0.010134	52337	160511_QHF_FH_JSI12i_2	57.859	44.28			0.70189	0.79143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70189	0.79143	NaN	1	1	Median	68667000	38575000	30092000	0	0	0	0	0	0	0	0	0	68667000	38575000	30092000	36377	2674	34356	223514	301349	301349			1	
MGFGNLNK	1	Unmodified	879.42727	0.42727255	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	36.64	35.62	2	0.0039248	29762	160511_QHF_FH_JSI10i_3	70.268	46.744			0.90645	0.89363	17.115	3	0	Plateau	1.5647	1.2577	NaN	1	0	Median	0.88806	1.0778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90645	0.89363	NaN	1	0	Median	347800000	167760000	180050000	48149000	14366000	33783000	79840000	39937000	39903000	0	0	0	219820000	113450000	106360000	36378	412	34357	223515;223516;223517	301350;301351;301352	301350			3	
MGFHVIYK	1	Unmodified	993.51061	0.51060825	2615	Q15047	SETDB1	Histone-lysine N-methyltransferase SETDB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	48.112	41.851	3	0.0022234	22985	160513_QHF_FH_JSI10Kac_6	55.676	55.676			1.1177	1.1412	61.727	6	2	Median	1.3633	1.1785	NaN	1	0	Median	0.91628	1.1051	NaN	1	0	Median	1.6617	1.578	20.725	2	1	Median	0.43089	0.46933	53.235	2	1	Median	137380000	70313000	67072000	10799000	3845000	6954200	21958000	11137000	10821000	46542000	16158000	30384000	58086000	39174000	18912000	36379	2615	34358	223518;223519;223520;223521;223522;223523	301353;301354;301355;301356;301357	301357			4	
MGFNIGVR	0	Unmodified	892.45891	0.45890703	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				53.918	52.336	2	0.0040766	42919	160511_QHF_FH_JSI9i_3	69.383	40.855			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36380	347	34359	223524	301358	301358			1	
MGFPATTFQDIQR	0	Unmodified	1510.7238	0.7238485	4808	Q9H9E3	COG4	Conserved oligomeric Golgi complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	71.391	70.567	2	0.00014909	61867	160511_QHF_FH_JSI11i_2	107.83	96.667			1.0164	1.1417	60.535	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0133	1.2617	NaN	1	0	Median	1.198	1.2013	21.332	2	2	Median	0.35077	0.37354	NaN	1	1	Median	132280000	70727000	61550000	0	0	0	30237000	13986000	16251000	77894000	38022000	39872000	24145000	18719000	5426400	36381	4808	34360	223525;223526;223527;223528;223529;223530	301359;301360;301361;301362;301363;301364;301365	301363			7	
MGFPEAASSFR	0	Unmodified	1198.5441	0.54409322	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	58.2	57.288	2	0.0032524	49678	160511_QHF_FH_JSI11i_2	69.276	59.01			1.2577	1.2702	20.864	3	3	Median	NaN	NaN	NaN	0	0	Median	0.90502	1.0966	NaN	1	1	Median	1.2577	1.2702	NaN	1	1	Median	1.4819	1.6552	NaN	1	1	Median	368940000	160710000	208230000	0	0	0	75654000	47829000	27826000	169940000	64879000	105060000	123340000	48004000	75336000	36382	1207	34361	223531;223532;223533	301366;301367;301368	301367			3	
MGFPPGAAQALVLQVFK	1	Unmodified	1772.9647	0.96474747	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	102.15	102.06	2;3	5.5858E-22	91267	160511_QHF_FH_JSI11i_3	220.94	203.58			1.1169	1.0748	30.801	7	1	Median	1.6383	1.336	23.379	2	0	Median	0.93514	1.1127	12.173	2	1	Median	1.1438	1.0622	1.6726	2	0	Median	0.56666	0.56849	NaN	1	0	Median	680320000	360070000	320250000	121400000	40580000	80819000	129860000	63089000	66773000	235990000	106510000	129480000	193070000	149890000	43174000	36383	3404	34362	223534;223535;223536;223537;223538;223539;223540	301369;301370;301371;301372;301373;301374;301375;301376;301377;301378	301371			10	
MGFPPNIVESAAENMVK	1	Unmodified	1832.8801	0.88009115	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	3	1	99.435	99.281	2;3	5.0867E-06	87334	160511_QHF_FH_JSI11i_2	97.836	87.737			0.63413	0.74092	56.372	4	2	Median	NaN	NaN	NaN	0	0	Median	0.48123	0.59356	70.224	2	1	Median	1.2827	1.2744	NaN	1	1	Median	0.50706	0.5629	NaN	1	0	Median	89469000	50305000	39164000	0	0	0	43702000	26611000	17091000	30082000	12642000	17440000	15685000	11052000	4633200	36384	5223	34363	223541;223542;223543;223544;223545;223546;223547	301379;301380;301381;301382;301383;301384;301385;301386;301387;301388	301382			10	
MGFTEVTPVTGASLR	0	Unmodified	1564.7919	0.79192807	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	69.944	68.995	2	1.4092E-06	59391	160511_QHF_FH_JSI12i_2	128.28	110.92			0.59679	0.63029	42.313	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83712	0.85012	NaN	1	0	Median	0.42545	0.4673	NaN	1	1	Median	199230000	124230000	75000000	0	0	0	0	0	0	140920000	84055000	56868000	58311000	40179000	18132000	36385	1857	34364	223548;223549	301389;301390	301389			1	
MGFWAPLVLSHSR	0	Unmodified	1499.7707	0.77073911	3771	Q8WUX9	CHMP7	Charged multivesicular body protein 7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.73	76.137	3	0.033749	42009	160513_QHF_FH_JSI10Kac_6	24.929	2.8836			1.4992	1.7337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4992	1.7337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54345000	20073000	34272000	0	0	0	54345000	20073000	34272000	0	0	0	0	0	0	36386	3771	34365	223550	301391	301391			1	
MGGDIANR	0	Unmodified	832.38614	0.38613602	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.29	4	4	3				1	2		3	4	4	3	11.858	9.5103	2	0.00019966	8130	160511_QHF_FH_JSI12i_2	120.62	69.989			1	1.0518	29.296	14	0	Median	1.6775	1.3951	10.468	3	0	Plateau	0.87027	1.0169	3.7622	4	0	Linear	1.1127	1.0744	8.7829	4	0	Median	0.57059	0.593	4.2555	3	0	Median	8317700000	4018700000	4299000000	1716900000	635270000	1081700000	2331900000	1277900000	1054000000	2463700000	1003000000	1460700000	1805200000	1102500000	702640000	36387	5475	34366	223551;223552;223553;223554;223555;223556;223557;223558;223559;223560;223561;223562;223563;223564	301392;301393;301394;301395;301396;301397;301398;301399;301400;301401;301402;301403;301404;301405;301406;301407;301408;301409	301396			18	
MGGDIANR	0	Oxidation (M)	848.38105	0.38105064	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	11.121	10.626	2	0.013389	8133	160511_QHF_FH_JSI11i_2	56.547	26.362			0.84181	0.9372	32.982	4	0	Median	1.5665	1.3783	NaN	1	0	Median	0.88104	1.0712	NaN	1	0	Median	0.80432	0.81993	NaN	1	0	Median	0.57076	0.64305	NaN	1	0	Median	609580000	329510000	280070000	129010000	44153000	84859000	160330000	89210000	71117000	189640000	108280000	81360000	130600000	87869000	42732000	36388	5475	34366	223565;223566;223567;223568	301410;301411;301412	301411		2674	3	
MGGEAPELALDPVPQDASTK	1	Unmodified	2024.9725	0.97247121	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	69.524	68.963	2	2.2165E-18	62625	160511_QHF_FH_JSI11i_1	160.27	145.07			0.81464	0.91286	18	5	3	Median	1.2054	0.99198	NaN	1	1	Median	0.76614	0.91286	NaN	1	0	Median	0.97592	0.9452	NaN	1	0	Median	0.70192	0.73217	21.23	2	2	Median	228070000	115710000	112350000	46886000	19244000	27642000	43832000	23843000	19990000	60562000	30132000	30430000	76785000	42496000	34288000	36389	2256	34367	223569;223570;223571;223572;223573	301413;301414;301415;301416;301417;301418;301419	301413			7	
MGGEEAEIR	0	Unmodified	990.44404	0.44404482	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2			1	2	2	3	18.462	15.944	2	0.00016337	13693	160511_QHF_FH_JSI11i_1	88.177	60.003			1.0865	1.1307	24.956	8	0	Median	1.5471	1.316	NaN	1	0	Median	0.97866	1.1529	34.35	2	0	Median	1.1911	1.1772	4.07	2	0	Median	0.67658	0.71073	29.854	3	0	Plateau	2353200000	1199000000	1154200000	143860000	62868000	80993000	741740000	402310000	339430000	833820000	357920000	475900000	633760000	375920000	257830000	36390	2265	34368	223574;223575;223576;223577;223578;223579;223580;223581	301420;301421;301422;301423;301424;301425;301426;301427;301428	301420			9	
MGGEEKPIGAGEEK	2	Unmodified	1430.6711	0.67114423	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.711	8	12	5							5	6	7	7	14.925	14.455	2;3	6.2734E-05	11816	160511_QHF_FH_JSI11i_1	125.61	84.328			0.88118	0.97619	66.883	23	14	Median	1.7491	1.4413	56.55	5	3	Median	0.85035	1.0136	54.784	6	4	Median	1.0257	1.0112	76.447	6	5	Median	0.6348	0.6652	69.211	6	2	Median	4836900000	2485700000	2351200000	675120000	233630000	441490000	1268700000	598280000	670460000	1743000000	938260000	804770000	1150000000	715550000	434480000	36391	1282	34369	223582;223583;223584;223585;223586;223587;223588;223589;223590;223591;223592;223593;223594;223595;223596;223597;223598;223599;223600;223601;223602;223603;223604;223605;223606	301429;301430;301431;301432;301433;301434;301435;301436;301437;301438;301439;301440;301441;301442;301443;301444;301445;301446;301447;301448;301449;301450;301451;301452;301453;301454;301455;301456;301457;301458	301432			30	
MGGFGSIIQLYPGGGPVR	0	Unmodified	1804.9294	0.9294246	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				96.544	95.719	2	0.0026977	78065	160511_QHF_FH_JSI9i_3	60.255	51.251			1.3318	1.1934	NaN	1	1	Median	1.3318	1.1934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3156000	1100800	2055200	3156000	1100800	2055200	0	0	0	0	0	0	0	0	0	36392	5340	34370	223607	301459	301459			1	
MGGGGAMNMGDPYGSGGQK	1	Oxidation (M)	1786.7073	0.70728851	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	25.107	24.547	2	7.331E-16	33692	160511_QHF_FH_JSI9i_1	119.01	110.29			1.1979	1.1215	46.961	4	1	Linear	0.59249	0.48442	NaN	1	1	Median	1.1916	1.3953	NaN	1	0	Median	1.2384	1.1824	NaN	1	0	Median	1.0229	1.0637	NaN	1	0	Median	147700000	81614000	66083000	16920000	12512000	4408000	42155000	20325000	21830000	46747000	22542000	24205000	41875000	26235000	15640000	36393	1222	34371	223608;223609;223610;223611;223612;223613	301460;301461;301462;301463;301464;301465;301466	301466		852;853	7	
MGGGGAMNMGDPYGSGGQK	1	Unmodified	1770.7124	0.71237389	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	3.02	11	5					1			5	3	5	4	39.667	38.207	2;3	1.035E-67	34580	160511_QHF_FH_JSI11i_1	237.21	232.85			1.0096	1.182	32.611	14	2	Median	1.5261	1.2959	37.587	4	2	Median	0.93533	1.1267	10.838	3	0	Median	1.7652	1.7089	23.431	4	0	Linear	0.66425	0.71006	2.5307	3	0	Median	2327800000	1117900000	1209800000	579800000	227690000	352110000	525960000	267620000	258340000	679000000	296320000	382680000	542990000	326300000	216690000	36394	1222	34371	223614;223615;223616;223617;223618;223619;223620;223621;223622;223623;223624;223625;223626;223627;223628;223629;223630	301467;301468;301469;301470;301471;301472;301473;301474;301475;301476;301477;301478;301479;301480;301481;301482;301483;301484;301485;301486;301487;301488;301489;301490;301491;301492;301493;301494;301495	301469			28	
MGGGGAMNMGDPYGSGGQK	1	2 Oxidation (M)	1802.7022	0.70220313	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	2	0	By MS/MS				1	0	2									2				39.508	38.295	2	9.748E-05	33726	160511_QHF_FH_JSI9i_1	85.554	79.113			1.1371	0.96855	NaN	1	0	Median	1.1371	0.96855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28713000	13391000	15322000	28713000	13391000	15322000	0	0	0	0	0	0	0	0	0	36395	1222	34371	223631;223632	301496;301497	301497		852;853	2	
MGGMEGPFGGGMENMGR	0	Unmodified	1713.6732	0.67315161	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							2	4	3	3	65.147	64.434	2	7.8481E-98	56153	160511_QHF_FH_JSI11i_2	259.48	257.54			0.88949	0.99556	20.388	11	1	Median	1.3062	1.0667	9.76	2	0	Median	0.75166	0.92049	19.687	3	1	Median	1.1469	1.1074	8.6145	3	0	Median	0.68418	0.76074	11.176	3	0	Median	3100900000	1596900000	1503900000	658550000	249900000	408650000	700190000	391480000	308710000	1115000000	577750000	537290000	627120000	377810000	249300000	36396	1765	34372	223633;223634;223635;223636;223637;223638;223639;223640;223641;223642;223643;223644	301498;301499;301500;301501;301502;301503;301504;301505;301506;301507;301508;301509;301510;301511;301512;301513;301514;301515;301516;301517;301518	301512			21	
MGGMEGPFGGGMENMGR	0	Oxidation (M)	1729.6681	0.66806623	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		18	2							4	4	4	8	54.537	53.573	2	1.0576E-10	49344	160511_QHF_FH_JSI11i_2	148.68	142.45			0.95348	0.98626	26.22	14	4	Median	1.5311	1.2969	17.335	4	3	Median	0.83658	1.0245	8.1815	2	0	Median	1.0335	1.0371	11.787	4	0	Median	0.66559	0.74115	11.052	4	1	Median	619460000	328130000	291330000	86891000	30843000	56048000	99034000	57018000	42016000	259370000	128040000	131330000	174170000	112220000	61944000	36397	1765	34372	223645;223646;223647;223648;223649;223650;223651;223652;223653;223654;223655;223656;223657;223658;223659;223660;223661;223662;223663;223664	301519;301520;301521;301522;301523;301524;301525;301526;301527;301528;301529;301530;301531;301532;301533;301534;301535;301536;301537;301538;301539;301540;301541;301542;301543;301544;301545;301546;301547;301548	301537		1448;1449;1450;1451	30	
MGGNTVIEGVNDRAEMVETQK	1	Unmodified	2277.0729	0.072930307	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			55.619	54.71	3	0.0003792	48343	160511_QHF_FH_JSI10i_2	53.453	37.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36398	4932	34373	223665	301549	301549			1	
MGGSSGALYGLFLTAAAQPLK	1	Unmodified	2052.0714	0.071397389	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.51		1	8						7	4	5	4	3	98.64	94.99	2;3	9.4336E-210	48497	160513_QHF_FH_JSI11Kac_6	386.99	364.76			0.91113	0.9158	30.149	16	2	Median	1.4812	1.2535	8.9768	4	1	Median	0.75757	0.89288	14.525	5	0	Median	0.97618	0.91994	15.243	4	0	Median	0.51211	0.53267	6.3328	3	1	Plateau	3382400000	1804400000	1578000000	629600000	251540000	378050000	895250000	511210000	384040000	1091200000	541050000	550200000	766270000	500580000	265690000	36399	2817	34374	223666;223667;223668;223669;223670;223671;223672;223673;223674;223675;223676;223677;223678;223679;223680;223681	301550;301551;301552;301553;301554;301555;301556;301557;301558;301559;301560;301561;301562;301563;301564;301565;301566;301567;301568;301569;301570;301571;301572;301573;301574;301575	301558			26	
MGGSSGALYGLFLTAAAQPLK	1	Oxidation (M)	2068.0663	0.066312011	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	1	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			96.829	93.877	3	9.2635E-07	82220	160511_QHF_FH_JSI9i_3	94.384	77.7			0.77223	0.73636	56.104	2	2	Median	1.3881	1.0949	NaN	1	1	Median	0.42961	0.49522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88188000	55488000	32700000	30318000	13602000	16715000	57870000	41885000	15985000	0	0	0	0	0	0	36400	2817	34374	223682;223683	301576;301577	301576		2151	2	
MGHAGAIIAGGK	1	Unmodified	1081.5702	0.57024839	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.11		2	7						2	4	3	2	2	20.184	18.195	2;3	5.6165E-11	14822	160511_QHF_FH_JSI10i_3	149.65	140.14			1.198	1.1327	34.693	11	3	Median	1.8097	1.5664	22.777	4	3	Median	0.8654	0.99374	11.711	3	0	Plateau	1.2599	1.2086	9.1717	2	0	Median	0.71407	0.71782	7.6144	2	0	Median	3043100000	1686800000	1356200000	216590000	81990000	134600000	852390000	535740000	316660000	778850000	395950000	382900000	1195200000	673140000	522090000	36401	1800	34375	223684;223685;223686;223687;223688;223689;223690;223691;223692;223693;223694	301578;301579;301580;301581;301582;301583;301584;301585;301586;301587;301588;301589;301590;301591	301579			14	
MGHAGAIIAGGK	1	Oxidation (M)	1097.5652	0.56516301	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	1	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	19.311	18.146	2	0.0036006	14410	160511_QHF_FH_JSI12i_3	64.711	49.561			1.1685	1.1421	42.087	2	0	Median	1.8773	1.538	NaN	1	0	Median	0.72731	0.84813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65171000	32660000	32511000	27397000	10575000	16822000	37774000	22085000	15689000	0	0	0	0	0	0	36402	1800	34375	223695;223696;223697	301592;301593	301593		1484	1	
MGHTVTVWNR	0	Unmodified	1199.587	0.58696109	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		36.932	28.153	3	0.00016293	15730	160513_QHF_FH_JSI10Kac_6	85.533	77.001			1.6985	1.6813	35.892	2	1	Median	2.5278	2.167	NaN	1	1	Median	1.1412	1.3044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17185000	6380600	10804000	4072700	1004900	3067900	13112000	5375800	7736300	0	0	0	0	0	0	36403	2827	34376	223698;223699;223700	301594;301595;301596	301596			3	
MGIGMAEFLDK	1	Unmodified	1210.5726	0.57261616	1469	P37268	FDFT1	Squalene synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		81.241	80.897	2	2.7942E-07	72255	160511_QHF_FH_JSI11i_3	120.68	95.788			0.94243	0.99928	21.83	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95478	1.1661	NaN	1	1	Median	0.93023	0.85635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107360000	48018000	59346000	0	0	0	58299000	29967000	28332000	49065000	18052000	31013000	0	0	0	36404	1469	34377	223701;223702	301597;301598	301597			2	
MGITEYNNQCR	0	Unmodified	1384.5864	0.58636874	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	27.872	27.087	2	1.6689E-19	22846	160511_QHF_FH_JSI11i_2	169.12	163.92			1.0511	1.2456	34.2	5	0	Median	2.2532	1.9349	NaN	1	0	Median	1.0664	1.288	4.7386	2	0	Median	0.83617	0.84712	NaN	1	0	Median	0.80477	0.86559	NaN	1	0	Median	316760000	161160000	155600000	34258000	12274000	21984000	114910000	58315000	56593000	124040000	63922000	60118000	43555000	26653000	16902000	36405	1520	34378	223703;223704;223705;223706;223707;223708	301599;301600;301601;301602;301603;301604;301605;301606;301607;301608	301605			10	
MGIVGPEFK	1	Unmodified	976.50519	0.50518852	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	54.103	53.141	2	0.0010102	45911	160511_QHF_FH_JSI11i_2	70.919	50.22			0.84475	0.84849	22.322	4	0	Median	1.0915	0.90751	NaN	1	0	Median	0.6576	0.79332	NaN	1	0	Median	1.0852	1.0909	NaN	1	0	Median	0.56993	0.64233	NaN	1	0	Median	393630000	208290000	185340000	68702000	34114000	34589000	116770000	68423000	48345000	116810000	46086000	70724000	91355000	59672000	31682000	36406	2636	34379	223709;223710;223711;223712	301609	301609			1	
MGIYVGAK	1	Unmodified	837.44186	0.44185998	2176;1129	P17858;Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	3	3	35.627	34.705	2	0.0077329	29281	160511_QHF_FH_JSI11i_2	68.485	31.928			0.61751	0.62726	86.403	6	5	Median	0.64144	0.53905	NaN	1	1	Median	0.59447	0.7299	NaN	1	1	Median	0.9059	0.91863	141.5	2	2	Median	0.42056	0.46457	110.34	2	1	Median	885770000	487650000	398120000	61689000	37050000	24639000	189240000	94281000	94960000	358810000	168720000	190090000	276030000	187600000	88435000	36407	1129;2176	34380	223713;223714;223715;223716;223717;223718;223719;223720	301610;301611;301612;301613;301614;301615;301616;301617;301618	301615			9	
MGIYYIPVLGPAPR	0	Unmodified	1545.8378	0.83775605	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		97.802	97.585	2	0.0036386	85528	160511_QHF_FH_JSI11i_2	64.04	5.3416			3.425	3.4914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.425	3.4914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27795000	11817000	15977000	0	0	0	0	0	0	27795000	11817000	15977000	0	0	0	36408	4393	34381	223721	301619	301619			1	
MGLAISLVATEK	1	Unmodified	1231.6846	0.68460945	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.449	75.672	2	1.7043E-05	65762	160511_QHF_FH_JSI12i_3	112.83	88.612			0.87704	0.73419	16.623	4	0	Linear	1.2412	1.0612	NaN	1	0	Median	0.79204	0.90655	NaN	1	0	Median	0.97116	0.88913	NaN	1	0	Median	0.69363	0.70866	NaN	1	0	Median	174890000	102260000	72631000	7930700	3459500	4471300	13365000	7097200	6268200	53200000	26206000	26994000	100390000	65496000	34898000	36409	3828	34382	223722;223723;223724;223725	301620;301621;301622;301623;301624;301625	301624			6	
MGLALSSLNK	1	Unmodified	1032.5638	0.56376603	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	57.259	56.426	2	1.8265E-07	48556	160511_QHF_FH_JSI12i_3	118.06	89.885			0.68067	0.72925	31.949	4	0	Linear	1.8442	1.4723	NaN	1	0	Median	1.1222	1.3142	NaN	1	0	Median	0.9717	0.94023	NaN	1	0	Median	0.72198	0.73074	NaN	1	0	Median	1701200000	835920000	865310000	250970000	80308000	170660000	269090000	128380000	140710000	478470000	229740000	248730000	702710000	397490000	305220000	36410	372	34383	223726;223727;223728;223729;223730	301626;301627;301628;301629;301630;301631;301632;301633	301633			8	
MGLALTALNK	1	Unmodified	1030.5845	0.58450147	4054	Q96EQ0	SGTB	Small glutamine-rich tetratricopeptide repeat-containing protein beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	64.029	63.136	2	0.00042505	51849	160511_QHF_FH_JSI9i_3	88.948	61.694			0.9062	0.82293	39.701	2	2	Median	1.2999	1.0896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63173	0.6215	NaN	1	1	Median	80448000	41345000	39103000	34798000	13893000	20906000	0	0	0	0	0	0	45650000	27453000	18197000	36411	4054	34384	223731;223732;223733	301634;301635;301636	301635			3	
MGLAMGGGGGASFDR	0	Oxidation (M)	1398.602	0.6020188	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.39		7	5					1		3	2	3	5	39.714	37.994	2	6.8653E-10	31993	160511_QHF_FH_JSI12i_3	151.1	146.16			0.91269	0.94884	36.216	10	1	Median	1.7079	1.4197	14.383	2	1	Median	0.77787	0.94817	NaN	1	0	Median	1.0788	1.0464	13.748	2	0	Median	0.73809	0.7477	44.571	5	0	Median	682870000	354560000	328310000	52574000	17996000	34578000	84269000	51411000	32858000	218450000	98841000	119610000	327580000	186310000	141270000	36412	1765	34385	223734;223735;223736;223737;223738;223739;223740;223741;223742;223743;223744;223745;223746	301637;301638;301639;301640;301641;301642;301643;301644;301645;301646;301647;301648;301649;301650;301651;301652;301653;301654;301655;301656	301654		1452;1453	20	
MGLAMGGGGGASFDR	0	Unmodified	1382.6071	0.60710418	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.75	3	4	4						3	2	4	4	4	54.148	51.52	2	1.9472E-06	45421	160511_QHF_FH_JSI9i_2	130.01	118.14			1.058	1.112	26.561	14	1	Median	1.6651	1.3885	28.785	2	0	Median	0.92014	1.102	20.531	4	0	Median	1.2022	1.1604	11.398	4	0	Median	0.75454	0.78294	25.168	4	1	Median	4918300000	2467400000	2450900000	695660000	279660000	416000000	908910000	457200000	451710000	1810900000	893180000	917710000	1502800000	837360000	665490000	36413	1765	34385	223747;223748;223749;223750;223751;223752;223753;223754;223755;223756;223757;223758;223759;223760	301657;301658;301659;301660;301661;301662;301663;301664;301665;301666;301667;301668;301669;301670;301671;301672;301673;301674;301675;301676;301677;301678;301679;301680	301670			24	
MGLEVIPVTSTTNK	1	Unmodified	1488.7858	0.78578005	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	1	2	3	67.911	67.159	2	2.3516E-07	61324	160511_QHF_FH_JSI12i_1	93.623	61.1			0.88245	0.88589	12.447	8	3	Median	1.1665	1.0345	13.116	3	2	Median	0.77066	0.91384	NaN	1	0	Median	0.8684	0.87656	19.869	2	1	Median	0.7836	0.85208	0.9614	2	0	Median	274730000	145700000	129020000	71494000	36747000	34747000	37465000	21505000	15961000	94341000	46254000	48087000	71426000	41199000	30227000	36414	3143	34386	223761;223762;223763;223764;223765;223766;223767;223768;223769	301681;301682;301683;301684;301685;301686;301687	301683			6	
MGLGPESR	0	Unmodified	845.40654	0.40653711	4969	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	20.636	19.658	2	0.031143	16272	160511_QHF_FH_JSI12i_2	41.429	20.874			1.2305	1.4301	68.76	2	1	Median	NaN	NaN	NaN	0	0	Median	1.8866	2.3255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80256	0.87945	NaN	1	0	Median	134320000	62827000	71494000	0	0	0	71647000	28919000	42728000	0	0	0	62674000	33908000	28766000	36415	4969	34387	223770;223771	301688;301689	301688			2	
MGLIIVNAWYGK	1	Unmodified	1363.7322	0.73222834	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	90.722	85.104	2	5.8533E-06	78674	160511_QHF_FH_JSI10i_3	99.139	88.615			0.63604	0.62526	55.691	5	4	Median	0.53273	0.46122	NaN	1	0	Median	1.0081	1.1631	NaN	1	1	Median	1.1164	1.0356	77.78	2	2	Median	0.60058	0.62526	NaN	1	1	Median	214920000	113920000	101000000	47788000	30905000	16883000	11010000	5408100	5601900	133990000	63911000	70078000	22129000	13693000	8435200	36416	5032	34388	223772;223773;223774;223775;223776;223777;223778	301690;301691;301692;301693;301694;301695;301696	301691			6	
MGLIQTADQLR	0	Unmodified	1244.6547	0.6547063	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	58.237	57.313	2	2.3175E-07	49694	160511_QHF_FH_JSI11i_2	121.83	110.47			0.67163	0.70441	34.323	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9056	0.89791	NaN	1	0	Median	0.49811	0.55262	NaN	1	0	Median	335950000	189330000	146620000	0	0	0	0	0	0	206940000	103390000	103550000	129010000	85937000	43072000	36417	1133	34389	223779;223780;223781	301697;301698;301699	301699			3	
MGLKAAQK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	945.49535	0.49535211	113	O00255	MEN1	Menin	yes	yes	1	1	1	1		By MS/MS			14	0							1				1			61.549	50.849	2	0.012007	27880	160513_QHF_FH_JSI10Kac_4	48.504	27.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36418	113	34390	223782	301700	301700	73	49	1	
MGLLAVLR	0	Unmodified	871.53134	0.53134369	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	2	2	2	1	77.534	72.347	2	0.0001758	39251	160513_QHF_FH_JSI10Kac_6	119.22	74.69			1.0594	1.0131	29.806	7	0	Median	1.541	1.3117	39.745	2	0	Median	0.84753	0.96763	10.523	2	0	Median	1.1444	1.0873	9.9921	2	0	Median	0.59534	0.64199	NaN	1	0	Median	408570000	188700000	219860000	98846000	36338000	62508000	215000000	101160000	113830000	69776000	35719000	34057000	24947000	15481000	9466200	36419	690	34391	223783;223784;223785;223786;223787;223788;223789	301701;301702;301703;301704;301705;301706;301707	301707			7	
MGLSMER	0	Unmodified	822.37279	0.37279414	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	28.728	27.948	2	0.0064795	23548	160511_QHF_FH_JSI11i_2	90.986	64.877			0.91558	1.1155	49.624	7	0	Median	1.8623	1.5728	NaN	1	0	Median	0.69647	0.82933	41.918	2	0	Median	1.2236	1.2089	63.508	2	0	Median	0.75516	0.82984	69.485	2	0	Median	2821300000	1482500000	1338700000	537470000	206570000	330900000	707870000	384470000	323400000	743470000	408040000	335420000	832470000	483450000	349020000	36420	1765	34392	223790;223791;223792;223793;223794;223795;223796	301708;301709;301710;301711;301712	301712			5	
MGLVDQLVEPLGPGLKPPEER	1	Unmodified	2273.209	0.2089535	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	93.224	92.913	3	2.1666E-22	80575	160511_QHF_FH_JSI12i_3	161.58	153.39			0.73198	0.91676	28.761	5	3	Median	1.232	1.0545	NaN	1	1	Median	0.73198	0.91676	NaN	1	0	Median	0.80457	0.80385	32.478	2	2	Median	0.54921	0.55688	NaN	1	0	Median	373880000	203550000	170320000	66125000	26979000	39146000	97586000	59475000	38111000	90813000	46141000	44672000	119350000	70960000	48394000	36421	1507	34393	223797;223798;223799;223800;223801	301713;301714;301715;301716;301717;301718;301719;301720;301721;301722	301722			10	
MGLVMDR	0	Unmodified	820.39353	0.39352958	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							1	2	3	3	34.959	34.314	2	0.0040196	29133	160511_QHF_FH_JSI11i_2	100.74	83.815			0.97058	0.98816	30.704	9	1	Median	1.8223	1.5117	NaN	1	0	Median	0.77607	0.9225	20.052	2	0	Median	0.97058	0.98816	5.9894	3	0	Plateau	0.81234	0.81474	48.948	3	1	Median	5276800000	2597300000	2679400000	687120000	231080000	456040000	1157700000	626680000	531030000	1812300000	850390000	961880000	1619700000	889180000	730490000	36422	1765	34394	223802;223803;223804;223805;223806;223807;223808;223809;223810	301723;301724;301725;301726;301727;301728;301729;301730;301731;301732;301733	301730			11	
MGMPSSLAHR	0	Unmodified	1085.511	0.51101895	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		3	0			3							1	1	1		29.185	28.277	3	0.00065714	23160	160511_QHF_FH_JSI9i_3	57.785	53.089			1.1252	1.0695	25.157	3	0	Median	1.567	1.3047	NaN	1	0	Median	0.67285	0.79157	NaN	1	0	Median	1.1252	1.0695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143470000	63301000	80168000	74069000	27675000	46394000	44168000	24073000	20096000	25233000	11554000	13678000	0	0	0	36423	2859	34395	223811;223812;223813	301734	301734			1	
MGMSIIEQLDPVSFSNYLK	1	Unmodified	2171.0643	0.064263101	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.17	102.11	3	0.044478	90638	160511_QHF_FH_JSI10i_2	25.916	16.869			1.1529	1.4107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1529	1.4107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32848000	9829400	23019000	0	0	0	32848000	9829400	23019000	0	0	0	0	0	0	36424	5556	34396	223814	301735	301735			1	
MGNIFANLFK	1	Unmodified	1153.5954	0.59540051	2125	P84077	ARF1	ADP-ribosylation factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	97.767	97.624	2	1.7919E-11	86770	160511_QHF_FH_JSI11i_3	152.63	139.05			0.90566	0.95145	28.396	5	0	Median	1.5858	1.3007	NaN	1	0	Median	0.80379	0.98374	16.06	2	0	Median	1.0241	0.95145	NaN	1	0	Median	0.60318	0.60999	NaN	1	0	Median	505650000	253390000	252260000	108090000	30694000	77399000	91573000	46429000	45144000	140810000	77266000	63540000	165180000	99001000	66181000	36425	2125	34397	223815;223816;223817;223818;223819	301736;301737;301738;301739;301740;301741;301742;301743	301737			8	
MGNIFANLFK	1	Acetyl (Protein N-term)	1195.606	0.6059652	2125	P84077	ARF1	ADP-ribosylation factor 1	yes	yes	0	1	0	0	By MS/MS				2	0		1								1				103.42	103.34	2	6.5535E-06	91198	160511_QHF_FH_JSI9i_2	107.66	95.038			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2761200	0	2761200	2761200	0	2761200	0	0	0	0	0	0	0	0	0	36426	2125	34397	223820	301744	301744			1	
MGNIFGNLLK	1	Unmodified	1105.5954	0.59540051	1944	P61204	ARF3	ADP-ribosylation factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	85.104	84.462	2	0.0024764	73173	160511_QHF_FH_JSI12i_3	73.248	56.708			3.4811	4.2654	18.102	4	4	Linear	5.7854	4.6771	NaN	1	1	Median	4.8209	5.5864	NaN	1	1	Median	4.0821	3.89	NaN	1	1	Median	3.669	3.7862	NaN	1	1	Median	481340000	64626000	416710000	83004000	8231700	74772000	69770000	9100800	60669000	127200000	16225000	110970000	201370000	31068000	170300000	36427	1944	34398	223821;223822;223823;223824	301745;301746;301747;301748	301748			4	
MGNTPDSASDNLGFR	0	Unmodified	1580.6889	0.68891956	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	44.174	43.533	2	8.9464E-05	39545	160511_QHF_FH_JSI12i_1	109.16	102.03			0.75807	0.79636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75807	0.79636	NaN	1	0	Median	138130000	87183000	50945000	0	0	0	0	0	0	0	0	0	138130000	87183000	50945000	36428	3594	34399	223825;223826;223827	301749;301750;301751;301752	301751			4	
MGPAIER	0	Unmodified	772.39016	0.39015876	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	20.066	19.105	2	0.01534	15694	160511_QHF_FH_JSI12i_2	64.803	24.117			0.81234	0.95102	6.523	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81779	0.99592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80693	0.90815	NaN	1	0	Median	1129700000	611640000	518040000	0	0	0	652750000	359830000	292920000	0	0	0	476930000	251810000	225120000	36429	1765	34400	223828;223829	301753;301754	301753			2	
MGPAMGPALGAGIER	0	Oxidation (M)	1442.701	0.70100457	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.64	3.65	1	3	6					1			1	5	5	50.134	48.501	2	4.1955E-05	40972	160511_QHF_FH_JSI12i_2	122.7	113.74			1.1061	1.1848	10.498	9	2	Median	NaN	NaN	NaN	0	0	Median	1.1061	1.3438	NaN	1	0	Median	1.2689	1.2252	13.767	3	0	Plateau	1.0795	1.1208	8.092	5	2	Median	709340000	356390000	352950000	0	0	0	122100000	63056000	59040000	298750000	140580000	158160000	288500000	152760000	135740000	36430	1765	34401	223830;223831;223832;223833;223834;223835;223836;223837;223838;223839;223840	301755;301756;301757;301758;301759;301760;301761;301762;301763;301764;301765;301766;301767;301768	301760		1454;1455	14	
MGPAMGPALGAGIER	0	Unmodified	1426.7061	0.70608995	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.37	3	8	6					1	3	2	5	7	7	61.595	59.465	2;3	1.538E-10	52649	160511_QHF_FH_JSI10i_2	153.95	133.08			1.0695	1.0643	126.24	20	6	Median	1.3549	1.1417	8.7196	2	0	Median	1.0854	1.2185	162.56	5	2	Median	1.0336	1.0165	120.33	7	2	Median	1.0088	1.028	127.13	6	2	Median	14070000000	4441200000	9628900000	1206400000	492570000	713820000	3321700000	874840000	2446900000	5374000000	1799800000	3574300000	4167900000	1274000000	2893900000	36431	1765	34401	223841;223842;223843;223844;223845;223846;223847;223848;223849;223850;223851;223852;223853;223854;223855;223856;223857;223858;223859;223860;223861	301769;301770;301771;301772;301773;301774;301775;301776;301777;301778;301779;301780;301781;301782;301783;301784;301785;301786;301787;301788;301789;301790;301791;301792;301793;301794;301795;301796;301797;301798;301799;301800	301793			32	
MGPFDVARK	1	Unmodified	1019.5222	0.52223557	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	1	By MS/MS		By matching		3	0			2							1		1		37.337	36.6	3	0.0021315	29857	160511_QHF_FH_JSI9i_3	55.549	39.887			1.2989	1.1247	18.53	2	0	Median	1.5749	1.2821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0713	0.98655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40695000	17386000	23309000	20160000	6991700	13168000	0	0	0	20536000	10394000	10142000	0	0	0	36432	1430	34402	223862;223863	301801	301801			1	
MGPGAASGGERPNLK	1	Unmodified	1440.7143	0.71434645	4642	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	3	1		22.132	21.16	2;3	0.00025937	16943	160511_QHF_FH_JSI9i_3	62.357	56.984			0.91939	1.0309	27.237	7	1	Median	1.3324	1.0525	16.77	3	1	Plateau	0.76164	0.87607	27.001	3	0	Median	0.91939	0.85408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	975040000	437030000	538020000	535970000	210190000	325780000	340280000	174530000	165750000	98792000	52302000	46491000	0	0	0	36433	4642	34403	223864;223865;223866;223867;223868;223869;223870	301802;301803;301804;301805;301806;301807;301808;301809;301810	301806			9	
MGPGAASGGERPNLK	1	Oxidation (M)	1456.7093	0.70926107	4642	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				15.14	14.159	3	0.0067119	11136	160511_QHF_FH_JSI9i_3	51.03	45.751			0.88452	0.7253	NaN	1	0	Median	0.88452	0.7253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88242000	51751000	36490000	88242000	51751000	36490000	0	0	0	0	0	0	0	0	0	36434	4642	34403	223871	301811;301812	301811		2506	2	
MGPGATAGGAEK	1	Unmodified	1045.4862	0.48624399	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	11.828	10.584	2	1.0276E-05	8884	160511_QHF_FH_JSI12i_1	118.4	109.49			1.0188	0.99666	32.89	9	0	Median	1.3026	1.1064	33.034	2	0	Median	0.75802	0.91897	58.817	2	0	Median	1.0188	0.99666	32.327	3	0	Median	0.76906	0.84493	34.461	2	0	Median	2301800000	1166500000	1135300000	553180000	208020000	345150000	594980000	372960000	222020000	690240000	338110000	352130000	463420000	247440000	215980000	36435	2020	34404	223872;223873;223874;223875;223876;223877;223878;223879;223880	301813;301814;301815;301816;301817;301818;301819;301820;301821;301822;301823;301824;301825	301817			13	
MGPGATAGGAEK	1	Oxidation (M)	1061.4812	0.48115861	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	9	5.66	1					2						1	2	8.7183	3.7751	2	0.015905	2862	160513_QHF_FH_JSI11Kac_3	60.518	56.162			0.63943	0.66464	124.71	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.086383	0.085285	NaN	1	1	Median	0.68635	0.73448	14.131	2	1	Median	66295000	35512000	30784000	0	0	0	0	0	0	12809000	11452000	1357700	53486000	24060000	29426000	36436	2020	34404	223881;223882;223883	301826;301827;301828	301827		1679	3	
MGPGIDR	0	Unmodified	744.35886	0.35885863	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							1	1	2	2	16.414	16.065	2	0.016664	13017	160511_QHF_FH_JSI11i_2	62.715	34.186			1.3313	1.3638	18.307	6	0	Median	1.9866	1.6127	NaN	1	0	Median	1.1153	1.284	NaN	1	0	Median	1.3313	1.335	11.542	2	0	Median	1.195	1.2155	31.572	2	0	Median	1947100000	944520000	1002500000	55308000	21967000	33341000	316830000	161680000	155160000	1271300000	613730000	657530000	303670000	147150000	156520000	36437	1765	34405	223884;223885;223886;223887;223888;223889	301829;301830	301830			2	
MGPLGLDHMASSIER	0	Oxidation (M)	1628.7651	0.76506139	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.83	3.69		3	8						1		4	3	5	50.009	48.476	2;3	0.00010288	39149	160511_QHF_FH_JSI10i_3	75.968	69.135			1.1011	1.1246	18.464	11	3	Median	NaN	NaN	NaN	0	0	Median	1.059	1.2538	10.085	4	1	Median	1.102	1.0137	6.7495	3	0	Plateau	0.78759	0.86064	16.171	4	2	Median	1398200000	720460000	677760000	0	0	0	249500000	119390000	130110000	461600000	213420000	248170000	687130000	387650000	299480000	36438	1765	34406	223890;223891;223892;223893;223894;223895;223896;223897;223898;223899;223900;223901	301831;301832;301833;301834;301835;301836;301837;301838;301839;301840;301841;301842;301843;301844;301845;301846;301847	301838		1456;1457	16	
MGPLGLDHMASSIER	0	Unmodified	1612.7701	0.77014677	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.32		8	7						7	4	5	6	7	67.743	64.588	2;3	6.9853E-30	55889	160511_QHF_FH_JSI12i_3	220.23	201.48			1.01	1.0228	23.124	20	3	Median	1.2702	1.056	21.797	4	1	Linear	1.027	1.2103	18.389	5	0	Median	1.0529	1.0228	14.817	6	1	Median	0.83228	0.87055	12.476	5	1	Median	13507000000	6486300000	7021000000	1410800000	623810000	786980000	2580800000	1397600000	1183200000	5548000000	2423000000	3125100000	3967700000	2042000000	1925800000	36439	1765	34406	223902;223903;223904;223905;223906;223907;223908;223909;223910;223911;223912;223913;223914;223915;223916;223917;223918;223919;223920;223921;223922;223923	301848;301849;301850;301851;301852;301853;301854;301855;301856;301857;301858;301859;301860;301861;301862;301863;301864;301865;301866;301867;301868;301869;301870;301871;301872;301873;301874;301875;301876;301877;301878;301879;301880;301881;301882;301883;301884;301885;301886	301881			39	
MGPLNISTPVEPVAASK	1	Unmodified	1709.9022	0.9022068	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	3	3	1	73.776	73.154	2	0.00038551	64198	160511_QHF_FH_JSI11i_2	83.314	68.624			0.96092	0.90593	23.107	10	4	Median	1.1226	0.9035	20.344	3	1	Median	0.95665	1.149	35.459	3	2	Median	0.89469	0.90837	25.666	3	1	Median	0.84951	0.87436	NaN	1	0	Median	321900000	168220000	153680000	73810000	32718000	41093000	103580000	57970000	45613000	109970000	57518000	52447000	34542000	20017000	14524000	36440	1501	34407	223924;223925;223926;223927;223928;223929;223930;223931;223932;223933	301887;301888;301889;301890;301891;301892;301893;301894	301893			8	
MGPLRESKK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1144.591	0.59104341	5101	Q9NX95	SYBU	Syntabulin	yes	yes	1	1	1	2	By MS/MS				16	0									1	1				58.07	48.919	2	0.02263	26009	160513_QHF_FH_JSI9Kac_6	32.841	7.9178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36441	5101	34408	223934	301895	301895	3310		1	
MGPMEKFWNK	2	Acetyl (K)	1308.5995	0.59949961	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.793	68.475	2	0.041251	37445	160513_QHF_FH_JSI11Kac_6	51.436	39.843			1.2535	1.2024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2535	1.2024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27356000	16991000	10366000	0	0	0	0	0	0	27356000	16991000	10366000	0	0	0	36442	645	34409	223935	301896	301896			1	
MGPPVGGHR	0	Unmodified	906.4494	0.44940497	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.26		1	7						2	2	4	3	1	12.152	10.75	2;3	4.2059E-05	8507	160511_QHF_FH_JSI9i_3	73.248	65.681			0.95553	1.0732	17.748	7	1	Median	1.4835	1.2046	2.5322	2	0	Median	0.9222	1.0732	6.7248	3	1	Median	0.87933	0.81964	11.311	2	0	Median	NaN	NaN	NaN	0	0	Median	1268300000	584960000	683320000	531550000	198940000	332610000	446770000	237160000	209620000	289960000	148870000	141090000	0	0	0	36443	1063	34410	223936;223937;223938;223939;223940;223941;223942;223943;223944;223945	301897;301898;301899;301900;301901;301902;301903;301904;301905	301900			9	
MGPPVGGHR	0	Oxidation (M)	922.44432	0.4443196	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	0	By MS/MS	By matching			3	0			2							1	1			11.818	11.073	2	0.03501	8526	160511_QHF_FH_JSI9i_3	41.652	21.097			1.0553	1.0334	16.867	2	0	Median	1.4398	1.1644	NaN	1	0	Median	0.7735	0.91726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40774000	17454000	23319000	25372000	8846000	16526000	15402000	8608400	6793600	0	0	0	0	0	0	36444	1063	34410	223946;223947	301906	301906			1	
MGPSGGEGMEPERR	0	Unmodified	1488.6449	0.64494625	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	3	5	2	17.946	17.448	2;3	6.0043E-07	14712	160511_QHF_FH_JSI10i_2	101.53	99.393			0.83135	0.92217	23.766	10	1	Median	1.27	1.0817	NaN	1	0	Median	0.75083	0.92215	14.228	3	0	Plateau	0.92407	0.90533	9.9959	4	1	Median	0.57793	0.60094	16.612	2	0	Median	1879900000	910740000	969200000	512000000	211180000	300820000	621480000	321890000	299580000	608590000	305330000	303260000	137870000	72345000	65528000	36445	2579	34411	223948;223949;223950;223951;223952;223953;223954;223955;223956;223957;223958	301907;301908;301909;301910;301911;301912;301913;301914;301915;301916;301917;301918;301919;301920;301921;301922;301923	301918			17	
MGPSGGEGMEPERR	0	Oxidation (M)	1504.6399	0.63986087	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	1	1		By MS/MS	By matching		2	0		2									1	1		10.435	10.071	3	0.024067	7986	160511_QHF_FH_JSI10i_2	33.204	15.395			0.83171	0.9154	8.417	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79925	0.97154	NaN	1	0	Median	0.86549	0.86251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89668000	46912000	42756000	0	0	0	57931000	30860000	27071000	31737000	16052000	15685000	0	0	0	36446	2579	34411	223959;223960	301924	301924			1	
MGPVMDR	0	Unmodified	804.36223	0.36222945	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	20.397	19.932	2	0.0082581	17111	160511_QHF_FH_JSI11i_1	84.244	61.621			1.0252	1.0353	16.3	7	0	Median	1.4009	1.1735	4.21	2	0	Median	0.71045	0.84401	NaN	1	0	Median	0.987	0.99556	18.295	2	0	Median	0.89333	0.91713	17.14	2	0	Median	2570900000	1154800000	1416100000	693010000	257780000	435230000	178320000	91996000	86323000	1399200000	654860000	744330000	300370000	150190000	150180000	36447	1765	34412	223961;223962;223963;223964;223965;223966;223967	301925;301926;301927	301925			3	
MGPYPQR	0	Unmodified	847.40106	0.4010578	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				16.348	15.581	2	0.060245	12879	160511_QHF_FH_JSI9i_2	40.921	16.948			2.1668	1.829	NaN	1	0	Median	2.1668	1.829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39799000	13415000	26384000	39799000	13415000	26384000	0	0	0	0	0	0	0	0	0	36448	5633	34413	223968	301928	301928			1	
MGPYPQRK	1	Unmodified	975.49602	0.49602082	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			10.717	10.044	3	0.0019813	7518	160511_QHF_FH_JSI9i_3	57.281	38.55			0.91274	0.88493	14.976	2	0	Median	1.1974	0.98379	NaN	1	0	Median	0.69578	0.79601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127550000	74378000	53173000	67151000	32704000	34447000	60400000	41674000	18726000	0	0	0	0	0	0	36449	5633	34414	223969;223970	301929	301929			1	
MGQAPSQSLLPPAQDQPR	0	Unmodified	1919.9523	0.95234489	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	3	2	51.062	50.386	2;3	3.2143E-08	45493	160511_QHF_FH_JSI11i_1	125.53	108.9			1.02	1.067	32.479	8	4	Median	1.6866	1.4359	8.1792	2	1	Median	0.82718	0.93932	NaN	1	1	Median	1.2535	1.212	24.925	3	2	Median	0.65478	0.67274	12.816	2	0	Median	225390000	119970000	105410000	59388000	17693000	41696000	23887000	15336000	8550800	66340000	33273000	33067000	75772000	53673000	22099000	36450	5474	34415	223971;223972;223973;223974;223975;223976;223977;223978;223979;223980	301930;301931;301932;301933;301934;301935;301936;301937;301938;301939;301940;301941	301932			12	
MGQAVPAPTGAPPGGQPDYSAAWAEYYR	0	Unmodified	2907.3286	0.32862772	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	81.255	80.741	2;3	1.5704E-20	71728	160511_QHF_FH_JSI9i_1	115.15	111.6			1.069	1.1143	25.716	6	0	Median	1.8446	1.4919	14.863	2	0	Median	0.89804	1.0787	NaN	1	0	Median	1.069	1.0281	15.974	2	0	Median	0.77379	0.81264	NaN	1	0	Median	681800000	317880000	363920000	146990000	59241000	87754000	126960000	60111000	66852000	285690000	134360000	151330000	122150000	64168000	57986000	36451	3966	34416	223981;223982;223983;223984;223985;223986;223987	301942;301943;301944;301945;301946;301947;301948;301949;301950;301951;301952;301953;301954;301955	301954			14	
MGQHISLAPIHK	1	Unmodified	1330.718	0.71797526	1760	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			34.769	33.337	4	4.4058E-05	27123	160511_QHF_FH_JSI9i_3	63.473	55.607			0.95027	0.90998	9.1156	2	0	Median	1.1906	0.97057	NaN	1	0	Median	0.75847	0.85318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69072000	36278000	32794000	37933000	18565000	19367000	31139000	17712000	13427000	0	0	0	0	0	0	36452	1760	34417	223988;223989	301956;301957	301956			2	
MGQHSLVACSGNLNK	1	Unmodified	1614.7606	0.76064471	5283	Q9UGN5	PARP2	Poly [ADP-ribose] polymerase 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.313	26.313	3	0.00017076	22574	160511_QHF_FH_JSI11i_3	84.753	79.862			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10668000	10668000	0	0	0	0	0	0	0	10668000	10668000	0	0	0	0	36453	5283	34418	223990	301958	301958			1	
MGQIIQYDK	1	Unmodified	1094.543	0.54303059	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.258	37.9	2	0.028911	32304	160511_QHF_FH_JSI12i_2	48.423	32.761			0.26197	0.27867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26197	0.27867	NaN	1	1	Median	23255000	16072000	7182700	0	0	0	0	0	0	0	0	0	23255000	16072000	7182700	36454	2884	34419	223991	301959	301959			1	
MGQLGLGNQTDAVPSPAQIMYNGQPITK	1	Unmodified	2928.4474	0.44736265	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	2	3	91.722	91.263	3	1.5244E-18	82844	160511_QHF_FH_JSI10i_1	110.78	104.81			0.88957	0.95583	18.69	8	2	Median	1.3716	1.1788	9.347	2	0	Median	0.77398	0.91772	1.435	2	1	Median	1.0662	1.0478	8.671	2	0	Median	0.70057	0.74812	0.30039	2	1	Median	401450000	217250000	184200000	67612000	29560000	38052000	109510000	66225000	43286000	126700000	60562000	66138000	97629000	60903000	36726000	36455	5200	34420	223992;223993;223994;223995;223996;223997;223998;223999;224000;224001	301960;301961;301962;301963;301964;301965;301966;301967;301968;301969;301970;301971;301972;301973;301974;301975;301976;301977;301978;301979;301980;301981;301982;301983	301973			24	
MGQMAMGGAMGINNR	0	Oxidation (M)	1553.6571	0.65710762	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		10	12							5	7	4	6	36.08	35.385	2	3.942E-07	29996	160511_QHF_FH_JSI9i_2	93.058	86.368			0.96726	1.0399	41.021	14	10	Median	1.6606	1.4437	51.377	3	3	Plateau	0.95409	1.1237	32.837	5	4	Median	1.4064	1.3037	9.2299	3	1	Median	0.89894	0.91257	38.287	3	2	Plateau	304280000	164660000	139620000	50616000	20553000	30063000	103640000	61943000	41700000	69217000	31295000	37921000	80803000	50867000	29936000	36456	2644	34421	224002;224003;224004;224005;224006;224007;224008;224009;224010;224011;224012;224013;224014;224015;224016;224017;224018;224019;224020;224021;224022;224023	301984;301985;301986;301987;301988;301989;301990;301991;301992;301993;301994;301995;301996;301997;301998;301999;302000;302001;302002;302003;302004;302005;302006;302007;302008	301997		2065;2066;2067	25	
MGQMAMGGAMGINNR	0	Unmodified	1537.6622	0.662193	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							3	4	3	4	49.503	48.569	2;3	2.6743E-66	42620	160511_QHF_FH_JSI9i_2	238.51	236.36			0.95263	1.0963	37.484	14	0	Median	1.783	1.5314	17.255	3	0	Median	0.87186	1.0478	4.77	4	0	Median	1.2637	1.1584	7.7679	3	0	Plateau	0.61677	0.64778	17.894	4	0	Median	2284800000	1143200000	1141600000	557540000	221950000	335590000	703190000	381180000	322020000	611790000	275930000	335860000	412290000	264110000	148180000	36457	2644	34421	224024;224025;224026;224027;224028;224029;224030;224031;224032;224033;224034;224035;224036;224037	302009;302010;302011;302012;302013;302014;302015;302016;302017;302018;302019;302020;302021;302022;302023;302024;302025;302026;302027;302028;302029;302030;302031;302032	302022			24	
MGQMFMYDLYQSR	0	Unmodified	1668.7099	0.70985469	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	81.048	72.802	2	1.013E-24	40987	160513_QHF_FH_JSI10Kac_6	162.68	147.42			0.96433	1.0419	19.303	4	0	Median	1.3739	1.205	NaN	1	0	Median	0.92959	1.1111	NaN	1	0	Median	1.0004	0.97711	NaN	1	0	Median	0.71936	0.77431	NaN	1	0	Median	147830000	71839000	75990000	29344000	9938800	19405000	73684000	37378000	36306000	21167000	10849000	10317000	23634000	13673000	9961000	36458	5214	34422	224038;224039;224040;224041	302033;302034;302035;302036	302036			4	
MGQPGSGSMPSR	0	Unmodified	1190.5172	0.51722654	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.36	17.087	2	0.0091665	13847	160511_QHF_FH_JSI11i_2	48.028	36.665			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36459	4302	34423	224042	302037	302037			1	
MGQTMER	0	Unmodified	851.36296	0.36295773	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	3	2	8.2721	7.0095	2	0.0053029	5412	160511_QHF_FH_JSI11i_2	95.352	77.791			1.0056	1.0629	31.452	8	0	Median	1.7276	1.4618	NaN	1	0	Median	0.88471	1.0539	11.94	2	0	Median	1.132	1.1168	5.647	3	0	Plateau	0.58739	0.62704	25.246	2	0	Median	4205300000	1985400000	2219900000	441720000	155430000	286290000	1143200000	561470000	581750000	1566800000	657320000	909480000	1053500000	611160000	442360000	36460	1765	34424	224043;224044;224045;224046;224047;224048;224049;224050	302038;302039;302040;302041;302042;302043;302044;302045;302046;302047	302046			10	
MGSGIER	0	Unmodified	748.35377	0.35377325	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.17	0.687	1	3	2								1	3	2	9.098	8.8685	2	0.016664	6526	160511_QHF_FH_JSI11i_2	62.715	17.742			0.93186	1.0096	12.543	6	0	Median	NaN	NaN	NaN	0	0	Median	0.86993	1.0634	NaN	1	0	Median	1.0326	1.0489	5.4703	3	0	Median	0.78795	0.83337	8.0323	2	0	Median	4135900000	2064900000	2070900000	0	0	0	1039500000	558810000	480670000	1907900000	758420000	1149500000	1188500000	747710000	440750000	36461	1765	34425	224051;224052;224053;224054;224055;224056	302048;302049;302050	302050			3	
MGSGVER	0	Unmodified	734.33812	0.33812319	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	6.2238	5.6397	2	0.01116	3594	160511_QHF_FH_JSI12i_2	71.715	71.715			0.76398	0.84854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76398	0.84854	NaN	1	0	Median	962980000	581030000	381940000	0	0	0	0	0	0	0	0	0	962980000	581030000	381940000	36462	1765	34426	224057	302051	302051			1	
MGSNSEVAR	0	Unmodified	949.42873	0.42872911	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.3801	7.1429	2	0.01476	4977	160511_QHF_FH_JSI10i_1	44.98	25.134			1.0074	1.1753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0074	1.1753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106300000	59145000	47154000	0	0	0	106300000	59145000	47154000	0	0	0	0	0	0	36463	1418	34427	224058	302052;302053	302052			2	
MGSQVIIPYR	0	Unmodified	1162.6169	0.61686423	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.442	52.057	2	0.0017287	44565	160511_QHF_FH_JSI12i_2	76.064	66.283			0.59164	0.68113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59164	0.68113	NaN	1	1	Median	133300000	88280000	45017000	0	0	0	0	0	0	0	0	0	133300000	88280000	45017000	36464	2767	34428	224059	302054	302054			1	
MGTLVSLEPSSVASDVSK	1	Unmodified	1805.9081	0.90808003	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	74.86	74.491	2	1.3368E-06	67943	160511_QHF_FH_JSI12i_1	110.92	89.164			0.62384	0.66798	45.696	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81976	0.92277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47475	0.48354	NaN	1	1	Median	48755000	32600000	16155000	0	0	0	30201000	18827000	11375000	0	0	0	18554000	13773000	4780300	36465	4410	34429	224060;224061	302055;302056	302055			2	
MGTLVSLEPSSVASDVSKPVLTTK	2	Unmodified	2445.3036	0.30364175	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	2	2	84.637	84.065	3;4	2.5954E-51	74590	160511_QHF_FH_JSI10i_2	199.04	195.31			1.1152	1.1174	43.677	8	4	Median	1.4553	1.2569	18.403	2	2	Median	0.95036	1.1321	10.211	2	1	Median	1.2355	1.2192	10.557	2	0	Median	0.50977	0.51904	45.982	2	1	Median	1064900000	601750000	463180000	94183000	30812000	63371000	149200000	86806000	62391000	384240000	205940000	178300000	437310000	278190000	159120000	36466	4410	34430	224062;224063;224064;224065;224066;224067;224068;224069	302057;302058;302059;302060;302061;302062;302063;302064;302065;302066;302067;302068	302063			12	
MGTPDPEYPDDYSQGGTR	0	Unmodified	1984.8109	0.81088519	831	P05187	ALPP	Alkaline phosphatase, placental type	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	42.445	42.082	2	1.0418E-10	38154	160511_QHF_FH_JSI12i_1	105.65	88.707			0.74052	0.71641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74052	0.71641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18930000	13604000	5326800	0	0	0	0	0	0	18930000	13604000	5326800	0	0	0	36467	831	34431	224070;224071	302069;302070	302070			2	
MGTPHLQK	1	Unmodified	910.46947	0.46947171	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	15.247	14.957	3	0.017517	11589	160511_QHF_FH_JSI12i_3	31.934	21.061			0.50326	0.51584	49.749	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1557	1.3431	NaN	1	0	Median	0.69604	0.65742	NaN	1	1	Median	0.50326	0.51584	NaN	1	0	Median	621180000	364300000	256880000	0	0	0	53249000	30078000	23171000	280930000	144550000	136380000	287000000	189680000	97328000	36468	1711	34432	224072;224073;224074	302071;302072	302072			2	
MGTPVPRPPQDMGQIGVR	0	Unmodified	1934.9819	0.98187088	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			58.361	57.119	3	0.00010615	47804	160511_QHF_FH_JSI10i_3	66.965	57.216			2.0242	1.5575	22.871	4	0	Linear	1.6586	1.3939	12.446	2	0	Median	0.79973	0.9636	7.1481	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	321760000	152840000	168920000	178180000	69401000	108780000	143580000	83444000	60140000	0	0	0	0	0	0	36469	2412	34433	224075;224076;224077;224078	302073;302074;302075;302076;302077;302078;302079	302074			7	
MGTTVATNALLER	0	Unmodified	1375.7129	0.71294946	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	54.814	53.666	2	0.00040394	47425	160511_QHF_FH_JSI10i_2	94.363	74.576			1.5186	1.8086	128.61	2	2	Median	NaN	NaN	NaN	0	0	Median	3.6194	4.4904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63716	0.72844	NaN	1	1	Median	202580000	39632000	162950000	0	0	0	167230000	17576000	149650000	0	0	0	35355000	22056000	13299000	36470	211	34434	224079;224080	302080;302081	302081			2	
MGVNLTR	0	Unmodified	789.41671	0.41670786	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	26.912	26.47	2	0.0040767	21973	160511_QHF_FH_JSI12i_3	100.37	60.61			1.226	1.279	68.509	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0845	1.3091	NaN	1	0	Median	1.2667	1.279	NaN	1	0	Median	0.38406	0.39506	NaN	1	0	Median	390820000	209200000	181630000	0	0	0	157300000	86411000	70886000	169080000	79565000	89520000	64441000	43220000	21221000	36471	4000	34435	224081;224082;224083	302082;302083;302084;302085	302085			4	
MGVPYCIIK	1	Unmodified	1079.5508	0.5507585	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	3	1	63.966	63.228	2	0.00062175	55746	160511_QHF_FH_JSI11i_3	81.784	63.001			0.92011	0.92963	11.135	6	3	Median	1.0867	0.94845	NaN	1	1	Median	0.80324	0.96466	14.529	2	2	Median	0.9235	0.93136	3.0979	2	0	Median	0.67845	0.76423	NaN	1	0	Median	1470100000	764130000	705950000	124560000	53689000	70868000	336650000	195390000	141260000	722500000	360660000	361840000	286370000	154380000	131980000	36472	2007	34436	224084;224085;224086;224087;224088;224089;224090	302086;302087;302088;302089;302090;302091;302092;302093;302094	302086			9	
MGVSLIHLK	1	Unmodified	996.57902	0.57902216	4571	Q9BZQ6	EDEM3	ER degradation-enhancing alpha-mannosidase-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	53.058	50.305	3	0.00013302	45913	160511_QHF_FH_JSI12i_3	78.334	44.538			0.80844	0.81264	17.687	4	1	Median	1.2807	1.0783	NaN	1	0	Median	0.71797	0.84162	NaN	1	0	Median	0.85393	0.78466	NaN	1	1	Median	0.76538	0.71289	NaN	1	0	Median	129040000	64705000	64331000	57825000	24874000	32951000	18442000	10259000	8183400	20937000	10332000	10605000	31833000	19241000	12592000	36473	4571	34437	224091;224092;224093;224094	302095;302096;302097;302098	302098			4	
MGVSPGNPVDSHAYPHIQNSK	1	Unmodified	2234.0538	0.053849845	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	43.055	42.938	4	5.7336E-06	37909	160511_QHF_FH_JSI11i_3	66.644	57.113			0.92846	0.90822	28.965	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1755	1.1147	NaN	1	0	Median	0.73331	0.74001	NaN	1	0	Median	93247000	41963000	51285000	0	0	0	0	0	0	56846000	23512000	33334000	36401000	18451000	17950000	36474	3164	34438	224095;224096	302099;302100;302101	302099			3	
MGVVECAK	1	Unmodified	892.41466	0.41465895	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		17.37	17.097	2	0.0071546	14450	160511_QHF_FH_JSI10i_1	58.815	31.853			0.81058	0.79009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81058	0.79009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	151920000	72181000	79735000	0	0	0	0	0	0	151920000	72181000	79735000	0	0	0	36475	5475	34439	224097;224098	302102;302103	302102			2	
MGWSGSGGLGAK	1	Unmodified	1106.5179	0.51787847	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	39.239	38.678	2	3.4668E-05	32254	160511_QHF_FH_JSI10i_3	105.2	92.158			1.0118	1.1715	26.961	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0118	1.1715	NaN	1	0	Median	1.3201	1.2458	NaN	1	0	Median	0.74665	0.75967	NaN	1	0	Median	608520000	344640000	263880000	0	0	0	70073000	37787000	32286000	211920000	94855000	117060000	326530000	212000000	114530000	36476	3432	34440	224099;224100;224101	302104;302105	302104			1	
MGWTGGGLGK	1	Unmodified	962.46439	0.46438634	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.681	40.681	2	0.0028896	35836	160511_QHF_FH_JSI11i_3	71.692	57.279			0.020848	0.019655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.020848	0.019655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2069500000	2027300000	42190000	0	0	0	0	0	0	2069500000	2027300000	42190000	0	0	0	36477	264	34441	224102	302106	302106			1	
MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR	1	Unmodified	3503.7871	0.78712404	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		100.96	100.96	4	6.5286E-62	89954	160511_QHF_FH_JSI11i_3	181.06	176.01			1.0178	0.93736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0178	0.93736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	363350000	211010000	152340000	0	0	0	0	0	0	363350000	211010000	152340000	0	0	0	36478	1202	34442	224103	302107;302108	302107			2	
MGYEEVSQK	1	Unmodified	1069.475	0.4750106	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.05	20.921	2	0.010108	18016	160511_QHF_FH_JSI11i_1	59.597	50.383			0.73675	0.72543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73675	0.72543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	240360000	163610000	76746000	0	0	0	0	0	0	240360000	163610000	76746000	0	0	0	36479	3988	34443	224104	302109	302109			1	
MGYMDPR	0	Unmodified	868.35714	0.35714407	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		1	1	3	1	26.199	23.974	2	0.012433	20157	160511_QHF_FH_JSI12i_2	69.39	65.537			1.5917	1.5577	33.347	6	0	Median	1.8246	1.5512	NaN	1	0	Median	1.0617	1.3057	NaN	1	0	Median	1.6632	1.6248	4.662	3	0	Median	0.61359	0.70496	NaN	1	0	Median	1493700000	652990000	840750000	249830000	87877000	161950000	276450000	142770000	133680000	659870000	242810000	417060000	307580000	179530000	128050000	36480	1222	34444	224105;224106;224107;224108;224109;224110	302110;302111;302112;302113;302114;302115;302116;302117;302118	302112			9	
MHAPPINMESVHMK	1	Unmodified	1620.7575	0.75747359	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	1	3	5	47.077	46.587	3;4	8.5044E-06	39416	160511_QHF_FH_JSI12i_3	110.92	107.84			1.1246	1.1806	29.799	10	5	Median	1.398	1.1825	NaN	1	1	Median	1.1937	1.4766	NaN	1	1	Median	1.0337	0.995	27.487	3	1	Plateau	1.0595	1.1786	38.414	5	2	Median	1439500000	660790000	778700000	90337000	39610000	50727000	101420000	51021000	50399000	612370000	287660000	324710000	635360000	282500000	352860000	36481	1620	34445	224111;224112;224113;224114;224115;224116;224117;224118;224119;224120	302119;302120;302121;302122;302123;302124;302125;302126;302127;302128;302129;302130;302131;302132	302128			13	
MHAPPINMESVHMK	1	Oxidation (M)	1636.7524	0.75238821	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	34.664	34.536	3	0.0040718	29301	160511_QHF_FH_JSI12i_3	44.511	40.409			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36482	1620	34445	224121	302133	302133		1294	1	
MHDLNTDQENLVGTHDAPIR	0	Unmodified	2275.0651	0.065142812	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							3	2	4	4	46.653	45.932	3;4	5.8735E-19	39630	160511_QHF_FH_JSI11i_2	159.14	150.43			1.1465	1.0321	14.57	13	4	Median	1.4613	1.2537	10.864	3	2	Plateau	0.79858	0.97147	0.97498	2	1	Median	1.1433	1.1007	19.749	4	1	Median	1.2989	1.2924	14.68	4	0	Linear	2254100000	1063600000	1190500000	313040000	147030000	166010000	351470000	196480000	154990000	728180000	325820000	402360000	861430000	394280000	467140000	36483	359	34446	224122;224123;224124;224125;224126;224127;224128;224129;224130;224131;224132;224133;224134	302134;302135;302136;302137;302138;302139;302140;302141;302142;302143;302144;302145;302146;302147;302148;302149;302150;302151;302152;302153;302154	302146			21	
MHEDINEEWISDK	1	Unmodified	1644.709	0.7089863	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	6.6		2							1		1	1	1	87.396	77.954	2;3	6.668E-07	41434	160511_QHF_FH_JSI11i_2	91.936	82.249			0.72801	0.77593	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72801	0.77593	NaN	1	0	Median	44432000	21103000	23330000	0	0	0	0	0	0	0	0	0	44432000	21103000	23330000	36484	1306	34447	224135;224136;224137	302155;302156;302157	302155			3	
MHFESGSTLK	1	Unmodified	1135.5332	0.53319418	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				32.174	23.356	3	0.035439	12855	160513_QHF_FH_JSI9Kac_6	30.824	24.947			2.1612	1.7977	NaN	1	1	Median	2.1612	1.7977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5730700	2376200	3354500	5730700	2376200	3354500	0	0	0	0	0	0	0	0	0	36485	1076	34448	224138	302158	302158			1	
MHFESGSTLKK	2	Unmodified	1263.6282	0.6281572	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	17.607	17.645	3	0.01332	14223	160511_QHF_FH_JSI12i_3	28.327	14.363			0.74128	0.76611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74128	0.76611	NaN	1	0	Median	46673000	23210000	23462000	0	0	0	0	0	0	0	0	0	46673000	23210000	23462000	36486	1076	34449	224139	302159	302159			1	
MHFSLKE	1	Unmodified	890.43202	0.43202358	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	31.908	31.495	3	0.002368	26127	160511_QHF_FH_JSI12i_3	72.789	54.465			0.89219	1.0899	87.823	5	1	Median	1.2939	1.1299	NaN	1	0	Median	0.89219	1.0899	NaN	1	0	Median	1.069	1.0034	174.43	2	1	Median	0.87208	0.86428	NaN	1	0	Median	329030000	144940000	184090000	18949000	9874700	9074400	25063000	10282000	14781000	132730000	56904000	75824000	152290000	67877000	84409000	36487	1432	34450	224140;224141;224142;224143;224144	302160;302161;302162;302163;302164	302163			5	
MHFVPWLARPIFPPWDR	0	Unmodified	2164.1193	0.11929106	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.37	84.649	4	0.0014592	48140	160513_QHF_FH_JSI10Kac_6	48.623	39.803			1.3293	1.56	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3293	1.56	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49505000	16034000	33471000	0	0	0	49505000	16034000	33471000	0	0	0	0	0	0	36488	4558	34451	224145	302165	302165			1	
MHGGGPSVTAGVPLK	1	Unmodified	1406.734	0.73401926	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	36.78	36.599	3	0.012465	31339	160511_QHF_FH_JSI11i_2	23.481	19.394			1.5377	1.4897	46.1	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2863	1.2297	9.9886	2	1	Median	2.2907	2.3358	46.474	2	2	Median	294920000	107240000	187680000	0	0	0	0	0	0	144950000	55767000	89181000	149970000	51470000	98501000	36489	3141	34452	224146;224147;224148;224149	302166;302167;302168;302169	302167			4	
MHGGGPSVTAGVPLKK	2	Unmodified	1534.829	0.82898227	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				30.69	29.297	4	0.062542	23834	160511_QHF_FH_JSI9i_3	16.399	9.0288			2.2949	1.8903	NaN	1	1	Median	2.2949	1.8903	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21723000	7472100	14251000	21723000	7472100	14251000	0	0	0	0	0	0	0	0	0	36490	3141	34453	224150	302170	302170			1	
MHGGGPTVTAGLPLPK	1	Unmodified	1531.8181	0.81808324	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.08		8	3						4	5	3	4	3	56.722	53.69	2;3	1.0138E-05	46476	160511_QHF_FH_JSI12i_2	96.464	85.359			1.0708	1.112	43.018	12	6	Median	1.2336	1.0696	37.738	4	2	Median	0.9068	1.1476	NaN	1	0	Median	1.0455	1.0338	30.202	4	3	Median	0.87867	0.98726	64.694	3	1	Plateau	1792800000	686290000	1106500000	450290000	172630000	277660000	41087000	23446000	17641000	1014400000	345110000	669280000	287050000	145110000	141940000	36491	1004	34454	224151;224152;224153;224154;224155;224156;224157;224158;224159;224160;224161;224162;224163;224164;224165	302171;302172;302173;302174;302175;302176;302177;302178;302179;302180;302181;302182;302183;302184;302185;302186;302187;302188;302189;302190;302191	302175			21	
MHGGGPTVTAGLPLPK	1	Oxidation (M)	1547.813	0.81299786	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.175	50.196	3	0.019961	43237	160511_QHF_FH_JSI12i_2	33.301	28.499			0.87992	0.97469	16.442	4	0	Median	1.4598	1.2049	NaN	1	0	Median	0.74545	0.91951	NaN	1	0	Median	1.0073	1.0332	NaN	1	0	Median	0.76863	0.82025	NaN	1	0	Median	171920000	93130000	78787000	25750000	11356000	14394000	46790000	25832000	20959000	58544000	32375000	26169000	40832000	23567000	17265000	36492	1004	34454	224166;224167;224168;224169	302192;302193	302192		587	1	
MHIAALASAILSDPENNIK	1	Unmodified	2007.0459	0.04591092	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			96.156	95.339	3	0.0046072	78918	160511_QHF_FH_JSI10i_3	40.085	34.542			0.65242	0.62769	70.279	2	1	Median	0.46217	0.38188	NaN	1	1	Median	0.92097	1.0317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41119000	26468000	14652000	18780000	12964000	5815600	22339000	13503000	8836000	0	0	0	0	0	0	36493	3748	34455	224170;224171	302194;302195;302196	302195			3	
MHIAQDINQDNLQLFLNSYNGR	0	Unmodified	2603.2551	0.25506885	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	89.512	89.512	3	6.8107E-05	77641	160511_QHF_FH_JSI12i_3	58.366	54.772			1.1566	1.0963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1566	1.0963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24493000	7344100	17149000	0	0	0	0	0	0	24493000	7344100	17149000	0	0	0	36494	5288	34456	224172;224173	302197;302198	302198			2	
MHIFSMNMK	1	Unmodified	1137.5133	0.51332714	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	4	2	4	3	57.752	51.78	2;3	4.5854E-17	27127	160513_QHF_FH_JSI12Kac_6	141.39	127.13			1.0575	0.9697	13.476	13	1	Median	0.97602	1.0246	22.081	4	0	Linear	0.8305	0.96875	0.13796	2	0	Median	1.0653	1.0342	8.621	4	0	Median	0.83952	0.90891	14.438	3	1	Median	1721400000	788900000	932530000	502520000	223580000	278940000	162040000	85238000	76798000	780560000	364340000	416220000	276310000	115750000	160570000	36495	5254	34457	224174;224175;224176;224177;224178;224179;224180;224181;224182;224183;224184;224185;224186	302199;302200;302201;302202;302203;302204;302205;302206;302207;302208;302209;302210;302211;302212;302213;302214;302215;302216;302217;302218;302219	302214			21	
MHIFSMNMK	1	Oxidation (M)	1153.5082	0.50824176	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	1	0	By MS/MS	By matching	By matching	By MS/MS	12.8	5.63			2						6	2	1	2	3	43.216	35.913	3	0.0037691	28346	160511_QHF_FH_JSI12i_3	46.334	42.16			1.1121	1.152	18.592	8	0	Median	1.2258	1.0778	34.279	2	0	Median	0.97911	1.0916	NaN	1	0	Median	1.1084	1.0997	4.9264	2	0	Median	1.5521	1.5827	15.979	3	0	Plateau	104140000	47815000	56326000	16999000	6452700	10546000	20217000	10979000	9237900	15677000	7576500	8100700	51248000	22807000	28442000	36496	5254	34457	224187;224188;224189;224190;224191;224192;224193;224194	302220;302221;302222;302223	302221		2616;2617	3	
MHIFSMNMK	1	2 Oxidation (M)	1169.5032	0.50315638	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	2	0	By matching	By matching	By matching	By MS/MS	16	0									4	1	1	1	1	32.162	23.36	3	0.0099024	12506	160513_QHF_FH_JSI12Kac_6	34.387	30.232			0.92893	0.9727	1.1775	4	0	Median	1.1387	0.98295	NaN	1	0	Median	0.83776	0.9811	NaN	1	0	Median	0.97358	0.96436	NaN	1	0	Median	0.88633	0.9605	NaN	1	0	Median	23637000	12334000	11303000	9060200	4694600	4365600	5762300	3058500	2703800	3678500	1718700	1959700	5136200	2861900	2274300	36497	5254	34457	224195;224196;224197;224198	302224	302224		2616;2617	1	
MHITDMK	1	Unmodified	874.40409	0.40409427	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	20.231	19.51	2;3	0.058878	15917	160511_QHF_FH_JSI11i_2	23.019	13.779			1.4947	1.5753	138.64	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56565	0.59104	NaN	1	1	Median	3.9496	4.1985	NaN	1	1	Median	104130000	55069000	49059000	0	0	0	0	0	0	77823000	49887000	27936000	26305000	5181800	21123000	36498	2767	34458	224199;224200	302225;302226	302226			2	
MHLGLVIPK	1	Unmodified	1006.5998	0.59975761	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.97		4	9						5	4	5	4	5	61.555	58.513	2;3	0.00018573	51424	160511_QHF_FH_JSI11i_3	74.127	69.771			1.0174	0.98664	43.78	18	3	Median	1.1293	0.93208	14.344	4	0	Median	0.84018	0.97185	45.882	5	1	Median	1.0812	1.0129	18.279	4	0	Median	1.0239	1.1071	70.112	5	2	Median	2029400000	979970000	1049400000	331990000	135500000	196490000	436960000	228330000	208640000	686880000	335960000	350920000	573520000	280180000	293340000	36499	2307	34460	224201;224202;224203;224204;224205;224206;224207;224208;224209;224210;224211;224212;224213;224214;224215;224216;224217;224218	302227;302228;302229;302230;302231;302232;302233;302234;302235;302236;302237;302238;302239;302240;302241;302242;302243;302244;302245;302246;302247;302248;302249;302250;302251;302252;302253;302254;302255;302256;302257;302258;302259;302260	302229			34	
MHLGLVIPK	1	Oxidation (M)	1022.5947	0.59467223	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	1	0	By MS/MS				3	0			2							2				46.276	44.666	3	0.020899	36530	160511_QHF_FH_JSI9i_3	40.002	35.645			0.92234	0.7891	116.7	2	2	Median	0.92234	0.7891	116.7	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16768000	9685900	7081800	16768000	9685900	7081800	0	0	0	0	0	0	0	0	0	36500	2307	34460	224219;224220	302261;302262	302261		1908	2	
MHLLFPLTLVR	0	Unmodified	1338.7846	0.78459826	4523	Q9BXS4	TMEM59	Transmembrane protein 59	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			2	1	89.382	80.009	3	0.0005154	43013	160513_QHF_FH_JSI12Kac_6	67.726	51.97			0.90947	0.94987	77.756	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.315	1.2784	107.26	2	1	Median	0.90947	0.94987	NaN	1	0	Median	64206000	29177000	35029000	0	0	0	0	0	0	30111000	9883400	20228000	34095000	19293000	14801000	36501	4523	34461	224221;224222;224223	302263;302264	302264			2	
MHLSQIQR	0	Oxidation (M)	1027.5233	0.5232982	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			20.051	18.849	2	0.028876	15129	160511_QHF_FH_JSI9i_3	46.994	29.146			1.9269	1.5408	NaN	1	0	Median	1.9269	1.5408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48407000	18862000	29545000	48407000	18862000	29545000	0	0	0	0	0	0	0	0	0	36502	2502	34462	224224;224225	302265;302266	302266			2	
MHLSQIQR	0	Unmodified	1011.5284	0.52838358	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				20.156	19.228	2	0.04312	16356	160511_QHF_FH_JSI9i_2	38.792	20.061			1.1417	0.96884	NaN	1	0	Median	1.1417	0.96884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54896000	27715000	27182000	54896000	27715000	27182000	0	0	0	0	0	0	0	0	0	36503	2502	34462	224226	302267	302267			1	
MHLYLGAAK	1	Unmodified	1002.5321	0.53207197	2348	Q13085;O00763	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	36.083	36.01	3	0.019528	31429	160511_QHF_FH_JSI11i_3	36.557	23.568			0.58064	0.55218	48.574	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43349	0.39166	NaN	1	1	Median	0.77774	0.77848	NaN	1	1	Median	94285000	48421000	45863000	0	0	0	0	0	0	39808000	24645000	15163000	54477000	23776000	30700000	36504	2348	34463	224227;224228	302268;302269	302268			2	
MHMWVEDVLDK	1	Unmodified	1401.6421	0.64209271	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	81.003	79.851	3	0.0011138	69978	160511_QHF_FH_JSI11i_3	57.836	48.403			1.6498	1.7139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6498	1.7139	NaN	1	1	Median	5451400	1578300	3873200	0	0	0	0	0	0	0	0	0	5451400	1578300	3873200	36505	5300	34464	224229;224230;224231;224232	302270;302271;302272;302273	302270			4	
MHNIPVYK	1	Unmodified	1000.5164	0.51642191	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		24.572	24.219	2;3	0.0044999	20226	160511_QHF_FH_JSI11i_2	47.082	36.994			0.77507	0.79243	10.289	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77507	0.79243	10.289	2	1	Median	NaN	NaN	NaN	0	0	Median	154010000	75871000	78141000	0	0	0	0	0	0	154010000	75871000	78141000	0	0	0	36506	2399	34465	224233;224234	302274;302275;302276	302275			3	
MHNQIPQVTSDGK	1	Unmodified	1453.6984	0.69836203	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		16								4	5	3	4	24.979	24.032	2;3	9.3353E-07	20900	160511_QHF_FH_JSI10i_2	154.24	135.15			1.0413	1.0681	59.882	14	4	Median	1.0055	0.85832	5.1161	3	0	Median	0.94695	1.1354	63.61	5	3	Median	1.166	1.158	4.2975	2	0	Median	1.1392	1.2396	97.721	4	1	Median	1322500000	699450000	623020000	283320000	154830000	128490000	385130000	221060000	164070000	308250000	159080000	149170000	345780000	164480000	181300000	36507	3828	34466	224235;224236;224237;224238;224239;224240;224241;224242;224243;224244;224245;224246;224247;224248;224249;224250	302277;302278;302279;302280;302281;302282;302283;302284;302285;302286;302287;302288;302289;302290;302291;302292;302293;302294;302295;302296;302297	302294			20	
MHPALSAFPSNIFYEGSLQNGVTAADR	0	Unmodified	2892.3865	0.38647695	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	3	2	1	94.228	93.918	3	6.9297E-21	83533	160511_QHF_FH_JSI11i_3	115.79	112.86			0.96229	0.99408	19.301	6	2	Median	1.4048	1.209	NaN	1	0	Median	0.8724	1.0612	15.495	2	1	Median	0.89821	0.86256	26.322	2	1	Median	0.94777	0.91971	NaN	1	0	Median	191110000	96342000	94772000	19938000	8686700	11252000	56690000	31975000	24716000	70372000	35028000	35345000	44113000	20653000	23460000	36508	3904	34467	224251;224252;224253;224254;224255;224256;224257	302298;302299;302300;302301;302302;302303;302304;302305;302306	302299			8	
MHPHLSK	1	Unmodified	848.43269	0.43269228	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	7.3282	7.0786	2;3	0.0047433	5365	160511_QHF_FH_JSI10i_3	54.157	32.026			1.1277	1.1172	35.563	6	2	Median	1.5105	1.2078	NaN	1	0	Median	0.97535	1.1295	24.726	2	1	Median	1.0792	1.0335	NaN	1	0	Median	0.8154	0.82365	65.617	2	1	Median	1836300000	803820000	1032500000	209160000	85602000	123560000	198320000	108250000	90066000	434520000	199920000	234590000	994310000	410040000	584270000	36509	2650	34468	224258;224259;224260;224261;224262;224263	302307;302308;302309;302310;302311;302312;302313	302308			7	
MHSEAEESK	1	Acetyl (Protein N-term)	1088.4444	0.44443876	688	O95379	TNFAIP8	Tumor necrosis factor alpha-induced protein 8	yes	yes	0	1	0	0	By matching	By MS/MS		By MS/MS	4	5.2	3					1				1	2		1	8.9102	6.7429	2	0.00054791	5974	160511_QHF_FH_JSI12i_1	50.805	48.229			1.2633	1.2181	20.893	4	0	Median	1.4799	1.2123	NaN	1	0	Median	1.0886	1.2491	36.094	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1649	1.2238	NaN	1	0	Median	103260000	45529000	57732000	35796000	14747000	21049000	37242000	14853000	22389000	0	0	0	30221000	15929000	14293000	36510	688	34469	224264;224265;224266;224267	302314;302315	302314			2	
MHSEAEESK	1	Acetyl (Protein N-term);Oxidation (M)	1104.4394	0.43935338	688	O95379	TNFAIP8	Tumor necrosis factor alpha-induced protein 8	yes	yes	0	1	1	0				By MS/MS	12	0					1								1	4.9584	-2.1485	2	0.014231	1399	160513_QHF_FH_JSI12Kac_2	32.32	23.98			0.957	1.0368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.957	1.0368	NaN	1	0	Median	1480700	844010	636710	0	0	0	0	0	0	0	0	0	1480700	844010	636710	36511	688	34469	224268	302316	302316		242	1	
MHSLATAAPVPTTLAQVDREK	1	Acetyl (Protein N-term)	2277.1787	0.17871601	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	73.08	72.657	3	1.2296E-15	64445	160511_QHF_FH_JSI10i_2	55.734	47.344			0.87386	1.0572	36.042	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.83918	1.0322	NaN	1	0	Median	1.0083	0.98697	13.11	2	0	Median	2.1679	2.0245	NaN	1	1	Median	253560000	111610000	141960000	0	0	0	82572000	42930000	39642000	139390000	59023000	80366000	31604000	9654000	21950000	36512	3854	34470	224269;224270;224271;224272	302317;302318;302319;302320;302321;302322	302321			6	
MHSLLIK	1	Unmodified	840.48914	0.48914452	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	3	3	4	2	31.894	29.097	2;3	0.0020585	23791	160511_QHF_FH_JSI9i_3	83.614	51.144			2.3205	2.2856	51.07	11	11	Median	2.1557	1.7677	29.928	3	3	Plateau	2.5111	3.0088	31.659	3	3	Median	2.5326	2.3947	85.19	3	3	Median	1.7744	1.8967	26.372	2	2	Median	1103100000	276690000	826380000	143860000	39331000	104530000	141850000	32704000	109150000	504360000	124890000	379470000	313000000	79765000	233230000	36513	1805	34471	224273;224274;224275;224276;224277;224278;224279;224280;224281;224282;224283;224284	302323;302324;302325;302326;302327;302328;302329;302330;302331;302332;302333;302334;302335	302328			13	
MHSLLIKNLK	2	Acetyl (K)	1237.7217	0.72166366	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		65	55.334	2;3	0.0024283	29920	160513_QHF_FH_JSI11Kac_6	67.334	58.752			0.017765	0.017154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.017765	0.017154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36810000	36564000	246390	0	0	0	0	0	0	36810000	36564000	246390	0	0	0	36514	1805	34472	224285;224286	302336;302337	302337	1824		2	
MHSPQTSAMLFTVDNEAGK	1	2 Oxidation (M)	2094.935	0.93503984	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	2	0			By MS/MS	By MS/MS	3	0			2									1	1	42.155	42.044	3	0.0013378	35932	160511_QHF_FH_JSI12i_3	52.185	48.994			1.2228	1.1793	18.988	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1324	1.0311	NaN	1	0	Median	1.3205	1.3488	NaN	1	1	Median	48564000	23816000	24748000	0	0	0	0	0	0	32567000	18294000	14273000	15996000	5521700	10474000	36515	1664	34473	224287;224288	302338;302339	302339		1349;1350	2	
MHSPQTSAMLFTVDNEAGK	1	Oxidation (M)	2078.9401	0.94012522	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.31		10	6						2	2	3	7	6	51.816	50.45	3	4.1647E-12	41238	160511_QHF_FH_JSI12i_3	113.88	103.96			1.132	1.1301	24.075	12	3	Median	1.3412	1.1637	14.463	2	1	Median	0.66733	0.81776	51.768	2	1	Median	1.0732	1.0416	14.054	4	1	Median	1.2156	1.2654	13.462	4	0	Median	532840000	258550000	274290000	47883000	21323000	26560000	90163000	50530000	39633000	192670000	91864000	100800000	202130000	94831000	107300000	36516	1664	34473	224289;224290;224291;224292;224293;224294;224295;224296;224297;224298;224299;224300;224301;224302;224303;224304;224305;224306	302340;302341;302342;302343;302344;302345;302346;302347;302348;302349;302350;302351;302352;302353;302354;302355;302356;302357;302358;302359;302360;302361;302362;302363	302362		1349;1350	24	
MHSPQTSAMLFTVDNEAGK	1	Unmodified	2062.9452	0.9452106	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	3	4	5	5	60.963	58.119	2;3	1.2566E-18	49935	160511_QHF_FH_JSI12i_3	161.99	155.87			0.97779	1.0621	21.267	16	1	Median	1.1749	0.99835	21.974	3	0	Median	0.97003	1.1834	23.291	4	0	Median	0.94954	0.95064	29.152	5	1	Median	0.96114	1.0621	14.065	4	0	Median	3542100000	1736300000	1805800000	431070000	152920000	278140000	694820000	401040000	293780000	1462500000	736180000	726340000	953720000	446150000	507570000	36517	1664	34473	224307;224308;224309;224310;224311;224312;224313;224314;224315;224316;224317;224318;224319;224320;224321;224322;224323	302364;302365;302366;302367;302368;302369;302370;302371;302372;302373;302374;302375;302376;302377;302378;302379;302380;302381;302382;302383;302384;302385;302386;302387;302388;302389;302390;302391;302392;302393;302394;302395;302396;302397;302398;302399;302400;302401	302395			38	
MHTISVPYSVMK	1	Unmodified	1391.6941	0.69412828	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	56.861	55.929	3	0.002065	48237	160511_QHF_FH_JSI11i_2	58.172	49.443			1.5781	1.6734	5.0313	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.635	1.6149	NaN	1	1	Median	1.5231	1.734	NaN	1	0	Median	107480000	60511000	46972000	0	0	0	0	0	0	54651000	33358000	21293000	52832000	27153000	25679000	36518	5202	34474	224324;224325;224326;224327	302402;302403;302404;302405	302404			4	
MHTLVFLSTR	0	Unmodified	1203.6434	0.64341333	2616	Q15048	LRRC14	Leucine-rich repeat-containing protein 14	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									3	1	2			63.686	55.153	2;3	0.0017534	30280	160513_QHF_FH_JSI10Kac_6	48.004	34.867			1.0118	1.1266	4.6802	3	0	Median	1.3239	1.1266	NaN	1	0	Median	0.94869	1.112	6.533	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117690000	60995000	56697000	26421000	10287000	16134000	91271000	50709000	40563000	0	0	0	0	0	0	36519	2616	34475	224328;224329;224330	302406;302407;302408	302408			3	
MHVEHER	0	Unmodified	936.42358	0.42358415	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.5611	4.6536	2	0.010062	2140	160511_QHF_FH_JSI12i_3	81.635	58.615			0.74138	0.76838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74138	0.76838	NaN	1	1	Median	24535000	13159000	11377000	0	0	0	0	0	0	0	0	0	24535000	13159000	11377000	36520	2670	34476	224331	302409	302409			1	
MHWSNVGGLSGMILTLK	1	Unmodified	1842.9484	0.94844548	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	1	5	2	1	89.598	83.573	2;3	1.2884E-43	45005	160513_QHF_FH_JSI10Kac_6	147.92	137.63			0.8895	0.89783	40.008	9	4	Median	1.0605	0.89783	NaN	1	0	Median	0.53295	0.63748	39.925	5	4	Median	1.2742	1.2031	42.937	2	0	Median	0.8895	0.92385	NaN	1	0	Median	1798500000	1036200000	762310000	433930000	224200000	209730000	743070000	511830000	231230000	505840000	250660000	255170000	115670000	49505000	66169000	36521	4348	34477	224332;224333;224334;224335;224336;224337;224338;224339;224340	302410;302411;302412;302413;302414;302415;302416;302417;302418;302419;302420;302421	302418			11	
MHWSNVGGLSGMILTLK	1	Oxidation (M)	1858.9434	0.9433601	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	81.655	72.525	3	3.0528E-05	39459	160513_QHF_FH_JSI9Kac_6	83.253	73.056			0.95837	0.8139	9.0845	3	2	Plateau	0.9704	0.8139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87411	0.80149	NaN	1	1	Median	0.85775	0.94477	NaN	1	1	Median	201800000	103660000	98140000	129820000	65129000	64688000	0	0	0	57484000	30333000	27152000	14502000	8201200	6300900	36522	4348	34477	224341;224342;224343	302422;302423;302424	302423		2455	3	
MIAAQLLAYYFTELK	1	Acetyl (Protein N-term)	1815.9481	0.94809436	1155	P19367	HK1	Hexokinase-1	yes	yes	0	1	0	0	By MS/MS				16	0									1	1				105.79	96.563	2	2.2977E-05	55747	160513_QHF_FH_JSI9Kac_6	40.475	31.425			1.154	0.95291	NaN	1	0	Median	1.154	0.95291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15120000	6669700	8450200	15120000	6669700	8450200	0	0	0	0	0	0	0	0	0	36523	1155	34478	224344	302425	302425			0	
MIAAVDTDSPR	0	Unmodified	1174.5652	0.56522259	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	31.144	30.543	2	5.4892E-05	27372	160511_QHF_FH_JSI12i_1	94.692	53.663			1.0209	1.0997	30.239	4	0	Median	0.84549	0.70374	NaN	1	0	Median	1.0097	1.1902	NaN	1	0	Median	1.0322	1.016	NaN	1	0	Median	1.3853	1.4347	NaN	1	0	Median	836960000	450580000	386380000	203820000	86216000	117600000	215270000	126440000	88837000	224500000	114110000	110390000	193370000	123820000	69554000	36524	2256	34479	224345;224346;224347;224348;224349	302426;302427;302428;302429;302430;302431	302428			6	
MIAGANFYIVGR	0	Oxidation (M)	1326.6754	0.67544174	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				73.68	63.131	2	0.014837	32715	160513_QHF_FH_JSI9Kac_5	46.891	41.11			0.69711	0.58227	NaN	1	0	Median	0.69711	0.58227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3161600	1764800	1396800	3161600	1764800	1396800	0	0	0	0	0	0	0	0	0	36525	678	34480	224350	302432	302432		236	1	
MIAGANFYIVGR	0	Unmodified	1310.6805	0.68052712	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.17	6.84		2	1						3	2		2	2	73.363	68.507	2	7.7528E-24	36082	160513_QHF_FH_JSI9Kac_6	161.92	151.39			1.0175	0.9656	16.517	6	2	Median	1.2104	1.0427	14.641	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90559	0.86984	28.523	2	0	Median	0.92943	0.9656	2.242	2	1	Median	436350000	227050000	209300000	156680000	72302000	84376000	0	0	0	194500000	108550000	85955000	85168000	46199000	38969000	36526	678	34480	224351;224352;224353;224354;224355;224356	302433;302434;302435;302436;302437;302438;302439;302440	302437			8	
MIAGANFYIVGRDPAGMPHPETK	1	Unmodified	2471.209	0.20897028	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			69.926	68.445	4	5.1776E-06	57289	160511_QHF_FH_JSI10i_3	60.747	47.559			1.0565	1.1341	28.852	3	1	Plateau	1.0391	0.85288	40.301	2	1	Median	0.80676	0.92219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145170000	72960000	72209000	103920000	47576000	56349000	41244000	25384000	15861000	0	0	0	0	0	0	36527	678	34481	224357;224358;224359	302441;302442;302443;302444	302442			4	
MIAGANFYIVGRDPAGMPHPETK	1	Oxidation (M)	2487.2039	0.2038849	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			66.73	58.857	4	0.010451	32302	160513_QHF_FH_JSI10Kac_6	36.627	28.634			0.86396	1.0393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86396	1.0393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22117000	11382000	10734000	0	0	0	22117000	11382000	10734000	0	0	0	0	0	0	36528	678	34481	224360	302445	302445		236;237	1	
MIAGQVLDINLAAEPK	1	Unmodified	1681.9073	0.90729217	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.714	8	8	3							6	5	4	4	84.654	83.965	2;3	1.4458E-22	73767	160511_QHF_FH_JSI11i_2	182.33	166.95			1.0213	1.0005	20.362	19	2	Median	1.0073	0.8699	17.822	6	2	Median	1.0409	1.2416	11.89	5	0	Median	1.0278	1.0184	5.2165	4	0	Median	0.77849	0.84602	7.837	4	0	Median	1641600000	864000000	777580000	267960000	135240000	132720000	468870000	249370000	219500000	451080000	213560000	237510000	453680000	265830000	187850000	36529	882	34482	224361;224362;224363;224364;224365;224366;224367;224368;224369;224370;224371;224372;224373;224374;224375;224376;224377;224378;224379	302446;302447;302448;302449;302450;302451;302452;302453;302454;302455;302456;302457;302458;302459;302460;302461;302462;302463;302464;302465;302466;302467;302468;302469;302470;302471;302472;302473;302474;302475;302476;302477;302478;302479;302480;302481;302482;302483	302479			38	
MIAILSENYGGK	1	Unmodified	1294.6591	0.65912298	13	A2RTX5	TARSL2	Probable threonine--tRNA ligase 2, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.8	1	3						3	2	2	3	2	2	69.145	63.243	2	0.00038415	33659	160513_QHF_FH_JSI11Kac_5	90.629	70.842			0.50624	0.4855	69.168	9	9	Median	0.60314	0.50576	20.209	2	2	Median	0.25791	0.30764	80.202	3	3	Plateau	0.57826	0.5856	73.276	2	2	Median	0.32165	0.35016	127.34	2	2	Median	359060000	204670000	154390000	18853000	11967000	6886200	140270000	93922000	46347000	87890000	51382000	36508000	112050000	47399000	64646000	36530	13	34483	224380;224381;224382;224383;224384;224385;224386;224387;224388	302484;302485;302486;302487;302488;302489;302490;302491;302492	302488			9	
MIAILTENYGGK	1	Unmodified	1308.6748	0.67477304	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.74	6	8	3				2	7	6	8	9	8	7	68.586	63.596	2	1.3305E-27	33879	160513_QHF_FH_JSI11Kac_5	200.6	171.45			1.1398	1.2174	185.2	32	32	Median	1.2026	0.99294	182.06	8	8	Median	1.7865	2.1319	172.51	9	9	Median	0.48073	0.46639	230.63	8	8	Median	2.7333	2.9586	182.82	7	7	Median	7981800000	4230800000	3751000000	1448000000	672870000	775180000	2139900000	1268900000	870980000	2426200000	1277000000	1149300000	1967600000	1012000000	955610000	36531	1282	34484	224389;224390;224391;224392;224393;224394;224395;224396;224397;224398;224399;224400;224401;224402;224403;224404;224405;224406;224407;224408;224409;224410;224411;224412;224413;224414;224415;224416;224417;224418;224419;224420	302493;302494;302495;302496;302497;302498;302499;302500;302501;302502;302503;302504;302505;302506;302507;302508;302509;302510;302511;302512;302513;302514;302515;302516;302517;302518;302519;302520;302521;302522;302523;302524;302525;302526	302516			34	
MIAILTENYGGK	1	Oxidation (M)	1324.6697	0.66968766	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	3.7		1					4	5	1	1	4	2	4	65.71	54.961	2	0.00013676	30242	160513_QHF_FH_JSI12Kac_4	98.048	93.141			1.214	1.1375	87.927	9	2	Median	1.214	1.0354	NaN	1	0	Median	0.78016	0.92924	73.728	3	1	Plateau	1.3572	1.3465	45.252	2	0	Median	2.1468	2.3726	126.27	3	1	Median	127070000	53480000	73593000	22461000	10247000	12213000	39774000	18089000	21685000	22112000	9162000	12950000	42728000	15982000	26745000	36532	1282	34484	224421;224422;224423;224424;224425;224426;224427;224428;224429;224430;224431	302527;302528;302529;302530;302531;302532;302533;302534;302535;302536;302537	302532		918	11	
MIALFNK	1	Acetyl (Protein N-term)	877.47316	0.47316011	3987	Q96BM9	ARL8A	ADP-ribosylation factor-like protein 8A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	2	1	95.209	94.912	2	0.0017043	86140	160511_QHF_FH_JSI12i_1	94.669	83.6			0.63582	0.65806	134.21	6	3	Median	9.1666	8.2639	NaN	1	1	Median	0.65168	0.745	6.6666	2	0	Median	0.37972	0.36902	70.921	2	1	Median	0.19206	0.19934	NaN	1	1	Median	46152000	27647000	18505000	4601700	262690	4339000	19000000	11693000	7307600	18246000	12195000	6050700	4304500	3496500	807960	36533	3987	34485	224432;224433;224434;224435;224436;224437;224438;224439	302538;302539;302540;302541;302542;302543;302544;302545	302539			8	
MIAPEGSLVFHEK	1	Unmodified	1456.7384	0.73843593	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.374	54.664	2	0.00020201	48024	160511_QHF_FH_JSI9i_2	72.652	52.89			0.34844	0.38855	64.555	2	2	Median	NaN	NaN	NaN	0	0	Median	0.19911	0.24615	NaN	1	1	Median	0.60974	0.61332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48330000	38806000	9524300	0	0	0	19833000	17279000	2554400	28497000	21527000	6969900	0	0	0	36534	1636	34486	224440;224441;224442;224443	302546;302547;302548;302549	302547			4	
MIASDSHRPEVK	1	Unmodified	1368.682	0.68198369	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							1	3	3	4	11.974	11.801	2;3;4	7.3276E-06	8944	160511_QHF_FH_JSI12i_3	100.04	72.888			0.99896	0.9685	35.349	10	2	Median	NaN	NaN	NaN	0	0	Median	1.2453	1.4304	29.668	3	0	Median	1.1002	1.0577	13.321	3	0	Median	0.79979	0.80195	36.762	4	2	Median	1696200000	947410000	748780000	0	0	0	293090000	139220000	153870000	847190000	473990000	373200000	555910000	334200000	221710000	36535	5124	34487	224444;224445;224446;224447;224448;224449;224450;224451;224452;224453;224454	302550;302551;302552;302553;302554;302555;302556;302557;302558;302559;302560;302561;302562	302558			13	
MIASHLLAYFFTELNHDQVQK	1	Acetyl (Protein N-term);Oxidation (M)	2562.2577	0.25769461	1785	P52789	HK2	Hexokinase-2	yes	yes	0	1	1	0	By MS/MS		By MS/MS		16	0									2	1		1		99.148	89.873	3	1.341E-125	51555	160513_QHF_FH_JSI11Kac_6	134.07	125.03			1.057	0.94067	3.2309	2	0	Median	1.0903	0.91942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0247	0.96241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	313030000	130220000	182810000	140700000	56574000	84127000	0	0	0	172330000	73645000	98683000	0	0	0	36536	1785	34488	224455;224456	302563;302564	302563		1467	2	
MIASHLLAYFFTELNHDQVQK	1	Acetyl (Protein N-term)	2546.2628	0.26277999	1785	P52789	HK2	Hexokinase-2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	100.4	91.961	3	0	52625	160513_QHF_FH_JSI9Kac_6	208.17	176.25			1.1017	1.0429	6.9579	3	0	Median	1.1838	1.0049	NaN	1	0	Median	0.88087	1.0429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1017	1.1498	NaN	1	0	Median	3385400000	1599800000	1785600000	1300500000	621190000	679350000	1361100000	701160000	659920000	130330000	0	130330000	593430000	277470000	315950000	36537	1785	34488	224457;224458;224459;224460	302565;302566;302567;302568;302569	302566			5	
MIDAGDALIYMEPEK	1	Unmodified	1694.7895	0.7895448	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	84.015	83.552	2;3	7.4922E-52	76142	160511_QHF_FH_JSI12i_1	218.06	206.33			1.0364	0.9837	15.758	8	0	Median	1.233	1.0142	5.7457	2	0	Median	0.72219	0.85273	5.9566	2	0	Median	0.99125	0.97541	2.6187	2	0	Median	1.1741	1.2523	11.89	2	0	Median	910070000	437380000	472690000	184930000	71629000	113300000	292620000	164840000	127770000	231840000	112620000	119210000	200680000	88283000	112400000	36538	5215	34489	224461;224462;224463;224464;224465;224466;224467;224468	302570;302571;302572;302573;302574;302575;302576;302577;302578;302579;302580;302581;302582;302583;302584;302585;302586;302587;302588	302578			18	
MIDGKPEYK	2	Unmodified	1079.5321	0.53213155	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		16.616	15.905	2;3	0.014901	13372	160511_QHF_FH_JSI10i_2	84.615	60.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19240000	19240000	0	0	0	0	19240000	19240000	0	0	0	0	0	0	0	36539	2198	34490	224469;224470	302589;302590	302590			2	
MIDIEGK	1	Unmodified	804.40514	0.40514012	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	30.202	29.516	2	0.04193	26772	160511_QHF_FH_JSI12i_1	46.426	8.8674			1.1651	1.8566	38.996	3	0	Plateau	1.1651	0.91466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0349	0.99916	NaN	1	0	Median	1.7915	1.8702	NaN	1	0	Median	149680000	65700000	83982000	25917000	12432000	13485000	0	0	0	33541000	14586000	18955000	90224000	38682000	51543000	36540	3736	34491	224471;224472;224473	302591	302591			1	
MIDLIIPR	0	Unmodified	969.56812	0.56812313	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	3	4	2	75.029	74.216	2	8.7104E-05	64007	160511_QHF_FH_JSI12i_2	142.64	109.09			0.43306	0.41315	98.075	12	12	Median	1.0771	0.91751	103.52	3	3	Plateau	0.29659	0.34533	114.97	3	3	Median	0.89261	0.85486	106.51	4	4	Median	1.0251	1.1378	132.39	2	2	Median	1743100000	970620000	772460000	320670000	149610000	171070000	417380000	294530000	122850000	654880000	349820000	305060000	350150000	176660000	173490000	36541	1837	34492	224474;224475;224476;224477;224478;224479;224480;224481;224482;224483;224484;224485	302592;302593;302594;302595;302596;302597;302598;302599;302600;302601;302602;302603;302604	302594			13	
MIDMLAANSGR	0	Unmodified	1177.5584	0.55836308	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		47.568	46.671	2	0.00057528	40042	160511_QHF_FH_JSI11i_2	76.228	37.436			0.18354	0.20588	128.77	4	4	Median	0.67986	0.58285	195.7	2	2	Median	0.19755	0.24545	NaN	1	1	Median	0.17052	0.17268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	642920000	454900000	188020000	200770000	106370000	94401000	176750000	136730000	40015000	265410000	211800000	53603000	0	0	0	36542	3216	34493	224486;224487;224488;224489;224490	302605;302606;302607;302608;302609	302608			5	
MIDMPVER	0	Unmodified	989.46742	0.4674228	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.779	41.321	2	0.0014529	37596	160511_QHF_FH_JSI12i_1	89.296	68.142			1.116	1.1378	3.0878	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97506	1.1378	NaN	1	0	Median	1.1193	1.104	NaN	1	0	Median	1.116	1.1744	NaN	1	0	Median	605000000	317230000	287780000	0	0	0	239240000	131810000	107430000	226250000	109390000	116870000	139510000	76027000	63484000	36543	2650	34494	224491;224492;224493	302610;302611;302612;302613;302614	302612			5	
MIDSARK	1	Unmodified	819.42727	0.42727255	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			5.3811	4.9741	2	0.050587	3032	160511_QHF_FH_JSI10i_2	56.091	13.616			4.4952	5.473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.4952	5.473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51893000	9266300	42627000	0	0	0	51893000	9266300	42627000	0	0	0	0	0	0	36544	2094	34495	224494	302615	302615			1	
MIDVDSLTDK	1	Unmodified	1135.5431	0.54309017	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.069	55.408	2	4.6309E-05	50219	160511_QHF_FH_JSI12i_1	93.667	80.63			0.65963	0.69255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65963	0.69255	NaN	1	0	Median	159720000	81087000	78634000	0	0	0	0	0	0	0	0	0	159720000	81087000	78634000	36545	4930	34496	224495	302616;302617	302616			2	
MIEAVQNHIGSLNWGYR	0	Unmodified	1986.9734	0.97341468	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.34	4.69		13	12						4	9	10	7	3	70.898	69.036	2;3	2.6723E-22	61082	160511_QHF_FH_JSI9i_2	174.52	152.31			0.61114	0.67879	105.76	23	23	Median	0.61114	0.52236	100.2	7	7	Median	0.56194	0.67879	89.862	9	9	Median	2.2018	2.1296	133.95	5	5	Median	1.5005	1.6278	181.46	2	2	Median	3402300000	1554400000	1847900000	857220000	300960000	556270000	1803300000	957460000	845890000	641760000	235460000	406300000	99945000	60540000	39404000	36546	2778	34497	224496;224497;224498;224499;224500;224501;224502;224503;224504;224505;224506;224507;224508;224509;224510;224511;224512;224513;224514;224515;224516;224517;224518;224519;224520;224521;224522;224523;224524	302618;302619;302620;302621;302622;302623;302624;302625;302626;302627;302628;302629;302630;302631;302632;302633;302634;302635;302636;302637;302638;302639;302640;302641;302642;302643;302644;302645;302646;302647;302648;302649;302650	302632			33	
MIEAVQNHIGSLNWGYR	0	Oxidation (M)	2002.9683	0.9683293	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS			6.25	5.63			3						1	2	2			67.374	64.368	3	0.0012051	54026	160511_QHF_FH_JSI10i_3	50.188	39.373			1.2732	1.4679	51.14	4	3	Median	2.1834	1.7528	86.403	2	2	Median	1.261	1.4679	8.1256	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143080000	59668000	83410000	69703000	23606000	46097000	73375000	36062000	37313000	0	0	0	0	0	0	36547	2778	34497	224525;224526;224527;224528	302651;302652;302653;302654;302655	302652		2139	5	
MIEEAGAIISTR	0	Unmodified	1289.6649	0.66493664	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	4.96		7	1				1	1		2	4	2	2	53.033	50.831	2	5.1475E-06	43485	160511_QHF_FH_JSI12i_2	99.568	68.196			2.8631	2.523	193.03	7	7	Median	2.8631	2.523	NaN	1	1	Median	0.46921	0.5493	198.29	3	3	Median	0.65754	0.6663	315.34	2	2	Median	4.1783	4.7337	NaN	1	1	Median	1440300000	1025400000	414940000	108990000	27112000	81878000	631630000	517050000	114580000	562350000	461620000	100730000	137370000	19617000	117750000	36548	99	34498	224529;224530;224531;224532;224533;224534;224535;224536;224537;224538	302656;302657;302658;302659;302660;302661;302662;302663;302664;302665	302657			10	
MIEKHGGYK	2	Acetyl (K)	1103.5434	0.54336494	686	O95373	IPO7	Importin-7	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		20.665	12.282	2;3	0.00066458	8043	160513_QHF_FH_JSI11Kac_6	96.253	38.694			0.37184	0.35942	0.22223	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37184	0.35942	0.22223	2	0	Median	NaN	NaN	NaN	0	0	Median	92707000	69556000	23152000	0	0	0	1624800	0	1624800	91082000	69556000	21527000	0	0	0	36549	686	34499	224539;224540;224541	302666;302667;302668	302667	344		3	
MIEMAAEK	1	Acetyl (Protein N-term)	963.44054	0.44053935	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59	58.354	2	0.0011489	52905	160511_QHF_FH_JSI12i_1	71.501	57.83			0.6014	0.67631	39.429	3	2	Median	1.2974	1.0353	NaN	1	0	Median	0.6014	0.67631	NaN	1	1	Median	0.48486	0.47096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60377000	34458000	25919000	25222000	14370000	10852000	18170000	9150800	9019400	16985000	10937000	6047700	0	0	0	36550	3223	34500	224542;224543;224544;224545	302669;302670;302671;302672;302673	302670			5	
MIEQDDFDINTR	0	Unmodified	1495.6613	0.66130782	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	52.046	51.551	2	0.00014833	46855	160511_QHF_FH_JSI12i_1	83.775	77.172			1.544	1.5793	52.324	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1164	1.3446	72.822	2	2	Median	NaN	NaN	NaN	0	0	Median	1.544	1.5793	NaN	1	0	Median	188860000	89281000	99579000	0	0	0	120350000	60691000	59658000	0	0	0	68511000	28590000	39921000	36551	5485	34501	224546;224547;224548	302674;302675;302676	302674			3	
MIESLTK	1	Unmodified	820.43644	0.43644025	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	26.012	24.828	2	0.020341	20795	160511_QHF_FH_JSI12i_2	60.76	14.389			5.7807	4.9202	166.46	3	3	Median	5.7807	4.9202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.489	1.6752	218.35	2	2	Median	474660000	145920000	328740000	197120000	39507000	157620000	0	0	0	0	0	0	277530000	106410000	171120000	36552	5487	34502	224549;224550;224551	302677;302678;302679	302678			3	
MIEYDPERR	0	Unmodified	1207.5656	0.56555694	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		24.435	23.433	2	0.0077448	20069	160511_QHF_FH_JSI9i_2	80.229	48.008			1.0984	0.94207	NaN	1	1	Median	1.0984	0.94207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6954800	3116100	3838700	6954800	3116100	3838700	0	0	0	0	0	0	0	0	0	36553	453	34503	224552;224553	302680;302681	302680			2	
MIFDVESMK	1	Unmodified	1098.509	0.50895327	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.6	5.2		4						1		1		3	1	68.139	65.333	2	0.00049206	57769	160511_QHF_FH_JSI9i_2	89.698	63.961			1.9731	2.2032	40.858	5	5	Median	1.9731	1.6763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7521	2.7672	55.946	3	3	Median	1.9611	2.2032	NaN	1	1	Median	1839400000	492430000	1346900000	372910000	101970000	270940000	0	0	0	1009500000	268940000	740580000	456930000	121530000	335400000	36554	939	34504	224554;224555;224556;224557;224558	302682;302683;302684;302685;302686	302683			5	
MIFDVESMKK	2	Unmodified	1226.6039	0.60391628	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							3	3	3	4	55.132	54.217	3	1.0403E-05	46784	160511_QHF_FH_JSI11i_2	78.513	72.219			1.1213	1.387	83.453	13	10	Median	1.1213	0.9119	41.324	3	2	Median	1.1002	1.387	37.806	3	2	Plateau	0.99683	1.027	107.95	3	2	Median	1.4907	1.5605	129.35	4	4	Median	2577900000	1165400000	1412500000	257610000	123950000	133660000	384000000	185920000	198080000	1067300000	506080000	561180000	869070000	349480000	519600000	36555	939	34505	224559;224560;224561;224562;224563;224564;224565;224566;224567;224568;224569;224570;224571	302687;302688;302689;302690;302691;302692;302693;302694;302695;302696;302697;302698	302696			12	
MIFIPSSIAFLTTLER	0	Unmodified	1838.0012	0.001192559	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	98.353	89.54	2;3	1.4586E-17	48880	160513_QHF_FH_JSI12Kac_6	145.43	125.04			0.84116	0.80041	24.151	7	1	Median	0.95766	0.83009	5.1489	2	0	Median	1.0686	1.2751	NaN	1	0	Median	0.75293	0.70992	12.491	2	1	Median	0.69643	0.73978	27.179	2	0	Median	741040000	424500000	316540000	168950000	106680000	62268000	156590000	76223000	80367000	317440000	189280000	128160000	98060000	52320000	45739000	36556	3602	34506	224572;224573;224574;224575;224576;224577;224578	302699;302700;302701;302702;302703;302704	302702			6	
MIFVGIK	1	Unmodified	806.47243	0.47243183	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.04		9	8					2	5	6	6	6	6	62.635	59.278	1;2	0.0027167	32571	160513_QHF_FH_JSI10Kac_6	94.669	48.318			0.85214	0.83382	69.886	24	19	Median	1.0652	0.91006	65.362	6	4	Median	0.85173	1.0005	79.082	6	6	Median	0.7911	0.75956	85.978	6	4	Median	0.67914	0.70918	66.047	6	5	Median	11155000000	5565800000	5589000000	1991600000	991040000	1000600000	3415900000	1784900000	1631100000	3086900000	1386800000	1700100000	2660300000	1403100000	1257200000	36557	2143	34507	224579;224580;224581;224582;224583;224584;224585;224586;224587;224588;224589;224590;224591;224592;224593;224594;224595;224596;224597;224598;224599;224600;224601;224602	302705;302706;302707;302708;302709;302710;302711;302712;302713;302714;302715;302716;302717;302718;302719;302720;302721;302722;302723;302724;302725;302726;302727;302728;302729;302730;302731;302732;302733;302734;302735;302736;302737;302738;302739;302740;302741;302742	302742			38	
MIFVGIK	1	Oxidation (M)	822.46735	0.46734645	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.781							2	3	3	1	3	2	2	57.754	47.574	2	0.045498	25194	160513_QHF_FH_JSI9Kac_6	48.761	29.955			0.67286	0.76925	18.348	8	0	Median	1.0807	0.90507	NaN	1	0	Median	0.69113	0.82916	13.797	3	0	Median	0.60668	0.59708	11.897	2	0	Median	0.73407	0.79435	15.149	2	0	Median	447190000	248930000	198260000	130880000	66054000	64827000	185220000	109060000	76157000	21211000	11626000	9584500	109890000	62195000	47691000	36558	2143	34507	224603;224604;224605;224606;224607;224608;224609;224610	302743	302743			1	
MIFVGIKK	2	Unmodified	934.56739	0.56739484	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	3	2	2	2	46.929	44.068	3	0.0198	38241	160511_QHF_FH_JSI11i_3	37.727	24.739			0.60807	0.52407	96.381	9	9	Median	0.60807	0.52407	92.118	3	3	Median	0.52675	0.60162	107.34	2	2	Median	1.2138	1.1585	123.17	2	2	Median	1.0798	1.0785	150.05	2	2	Median	317280000	184060000	133220000	82335000	46659000	35676000	98095000	70830000	27265000	35496000	15413000	20083000	101350000	51160000	50193000	36559	2143	34508	224611;224612;224613;224614;224615;224616;224617;224618;224619	302744;302745;302746;302747;302748;302749;302750;302751;302752	302744			9	
MIGEFVSDRK	1	Unmodified	1180.591	0.59104341	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		32.865	32.165	3	0.038378	27851	160511_QHF_FH_JSI11i_3	28.806	22.771			3.0971	3.1822	106.25	2	2	Median	NaN	NaN	NaN	0	0	Median	5.774	6.7455	NaN	1	1	Median	1.6612	1.5012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65122000	20650000	44472000	0	0	0	25324000	4411800	20912000	39798000	16239000	23559000	0	0	0	36560	3838	34509	224620;224621	302753;302754	302753			2	
MIGGLFIYNHK	1	Unmodified	1291.6747	0.67471346	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.19	6.49			11						10	4	7	5	5	66.427	61.441	2;3	4.6294E-46	32506	160513_QHF_FH_JSI9Kac_6	209.36	194.69			1.0396	0.98545	62.797	20	9	Median	1.392	1.1493	13.371	4	0	Median	0.81669	0.97105	88.235	6	4	Median	1.0837	1.0133	64.694	5	3	Median	0.77022	0.78606	63.83	5	2	Median	12918000000	6149400000	6768700000	3039800000	1268900000	1770900000	4258100000	2155400000	2102700000	3306400000	1517300000	1789100000	2313800000	1207800000	1106000000	36561	4017	34510	224622;224623;224624;224625;224626;224627;224628;224629;224630;224631;224632;224633;224634;224635;224636;224637;224638;224639;224640;224641;224642	302755;302756;302757;302758;302759;302760;302761;302762;302763;302764;302765;302766;302767;302768;302769;302770;302771;302772;302773;302774;302775;302776;302777;302778;302779;302780;302781;302782;302783;302784;302785;302786;302787;302788;302789;302790;302791;302792	302778			38	
MIGGLFIYNHK	1	Oxidation (M)	1307.6696	0.66962808	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	5	5	2	2	61.37	54.959	2;3	8.9994E-20	29158	160513_QHF_FH_JSI9Kac_6	161.9	141.91			0.97593	0.90966	52.84	14	4	Median	1.0302	0.84358	36.34	5	1	Median	0.85042	1.0167	78.82	5	3	Median	0.89188	0.86838	17.954	2	0	Median	0.83845	0.89181	13.468	2	0	Median	827000000	370790000	456210000	306120000	122840000	183280000	250580000	112790000	137790000	136450000	65386000	71061000	133840000	69773000	64072000	36562	4017	34510	224643;224644;224645;224646;224647;224648;224649;224650;224651;224652;224653;224654;224655;224656	302793;302794;302795;302796;302797;302798;302799;302800;302801;302802;302803;302804;302805;302806;302807;302808;302809;302810;302811;302812;302813;302814;302815	302806		2373	23	
MIGGPILPSER	0	Unmodified	1168.6274	0.62742892	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							1	3	2	2	54.197	53.471	2	7.6673E-06	47277	160511_QHF_FH_JSI10i_2	112.84	87.919			1.0707	1.1802	21.107	5	3	Median	1.2674	1.0583	NaN	1	1	Median	1.0069	1.2452	7.5802	2	2	Median	1.0707	1.1064	NaN	1	0	Median	1.5725	1.7944	NaN	1	0	Median	1981000000	945250000	1035700000	384900000	191880000	193020000	924250000	466820000	457430000	600100000	262640000	337460000	71738000	23908000	47830000	36563	1659	34511	224657;224658;224659;224660;224661;224662;224663;224664	302816;302817;302818;302819;302820;302821;302822;302823	302823			8	
MIGHNVEGPFSK	1	Unmodified	1314.6391	0.63905624	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.378	35.314	3	0.00020712	30751	160511_QHF_FH_JSI11i_3	54.276	46.171			0.88501	0.86522	22.242	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0832	1.0126	NaN	1	0	Median	0.72308	0.7393	NaN	1	0	Median	114530000	69668000	44857000	0	0	0	0	0	0	46567000	26001000	20567000	67958000	43668000	24290000	36564	3935	34512	224665;224666	302824;302825;302826	302824			2	
MIHELLLALSGYPGSIFTWNK	1	Unmodified	2389.2504	0.25042439	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	96.867	88.79	3	1.8371E-07	49936	160513_QHF_FH_JSI11Kac_6	121.77	106.83			4.5085	4.2453	260.24	6	6	Median	1.2127	1.0157	319.51	2	2	Median	1.0038	1.2036	411.34	2	2	Median	21.33	19.983	NaN	1	1	Median	1.7507	1.8528	NaN	1	1	Median	1392800000	622140000	770700000	388100000	187550000	200550000	696640000	401600000	295040000	178370000	5696700	172670000	129730000	27302000	102430000	36565	5281	34513	224667;224668;224669;224670;224671;224672	302827;302828;302829;302830;302831;302832	302827			6	
MIHFILLFSR	0	Unmodified	1275.7162	0.71618435	4194	Q96PC3	AP1S3	AP-1 complex subunit sigma-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.838	78.955	3	2.903E-06	43282	160513_QHF_FH_JSI9Kac_6	94.297	61.072			0.27457	0.32287	127.48	3	2	Median	0.27457	0.22963	NaN	1	1	Median	0.27025	0.32287	NaN	1	1	Median	2.4987	2.4285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79176000	50591000	28585000	16758000	13375000	3382900	39150000	27801000	11349000	23268000	9414200	13854000	0	0	0	36566	4194	34514	224673;224674;224675;224676	302833;302834;302835;302836	302834			4	
MIHGNPSGVDNAVSTWGGALR	0	Unmodified	2138.0327	0.032720472	2209	Q03426	MVK	Mevalonate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	64.998	63.903	3	1.1465E-09	53503	160511_QHF_FH_JSI10i_3	103.73	89.039			1.2389	1.2547	14.725	3	2	Median	1.9322	1.6024	NaN	1	1	Median	1.0113	1.2302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2389	1.2547	NaN	1	1	Median	149510000	70563000	78951000	33200000	11603000	21598000	81418000	41992000	39427000	0	0	0	34895000	16968000	17926000	36567	2209	34515	224677;224678;224679	302837;302838;302839;302840;302841;302842	302837			6	
MIHILLYYK	1	Unmodified	1192.6678	0.66783717	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			6						14	7	4	4	5	73.328	67.172	2;3	1.2278E-05	35343	160513_QHF_FH_JSI9Kac_6	108.09	86			2.1559	2.0877	113.97	19	17	Median	1.1525	0.93285	141.81	6	5	Median	2.0198	2.3767	99.187	4	3	Median	2.7279	2.6027	124.94	4	4	Median	0.65594	0.68158	101.43	5	5	Median	4471300000	1885900000	2585400000	1231900000	497570000	734350000	1647900000	755720000	892220000	803560000	202340000	601220000	787880000	430230000	357650000	36568	573	34516	224680;224681;224682;224683;224684;224685;224686;224687;224688;224689;224690;224691;224692;224693;224694;224695;224696;224697;224698;224699	302843;302844;302845;302846;302847;302848;302849;302850;302851;302852;302853;302854;302855;302856;302857;302858;302859;302860;302861;302862;302863;302864;302865;302866;302867;302868	302854			26	
MIHILLYYK	1	Oxidation (M)	1208.6628	0.66275179	573	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									26	6	6	7	7	70.885	61.979	2;3	2.9149E-07	34075	160513_QHF_FH_JSI10Kac_6	135.87	104.49			0.87792	0.78186	98.162	25	23	Median	0.8973	0.78186	81.903	5	4	Median	0.51836	0.59569	117.99	6	6	Median	0.68641	0.662	107.88	7	6	Median	1.5346	1.619	94.848	7	7	Median	1121300000	563340000	558000000	225640000	97249000	128390000	240790000	162430000	78359000	306650000	153020000	153620000	348270000	150640000	197630000	36569	573	34516	224700;224701;224702;224703;224704;224705;224706;224707;224708;224709;224710;224711;224712;224713;224714;224715;224716;224717;224718;224719;224720;224721;224722;224723;224724;224725	302869;302870;302871;302872;302873;302874;302875;302876;302877;302878;302879;302880;302881;302882;302883;302884;302885;302886;302887;302888;302889;302890;302891;302892;302893;302894;302895;302896	302895		216	28	
MIIEEAK	1	Unmodified	832.43644	0.43644025	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	25.473	24.75	2	0.0057267	21296	160511_QHF_FH_JSI9i_1	97.602	32.826			1.7148	1.784	39.049	8	5	Median	3.1535	2.6369	22.232	2	2	Median	0.9694	1.1655	10.001	2	1	Median	2.0305	2.0249	13.108	2	1	Median	1.2241	1.3274	36.995	2	1	Median	5602400000	2513400000	3089000000	1158000000	433540000	724500000	1443500000	693920000	749540000	1730500000	806100000	924420000	1270400000	579880000	690510000	36570	1630	34517	224726;224727;224728;224729;224730;224731;224732;224733;224734	302897;302898;302899;302900;302901;302902;302903;302904;302905;302906	302902			10	
MIIENFEALK	1	Unmodified	1206.6318	0.63184559	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	74.292	73.426	2	2.4504E-07	65267	160511_QHF_FH_JSI10i_2	114.84	95.054			0.88115	1.0077	28.874	4	1	Median	0.73979	0.62781	NaN	1	1	Median	0.72587	0.89444	NaN	1	0	Median	1.1084	1.1353	NaN	1	0	Median	1.0495	1.1743	NaN	1	0	Median	341940000	190580000	151360000	51431000	27098000	24333000	82162000	45654000	36509000	137890000	76810000	61076000	70461000	41022000	29439000	36571	2956	34518	224735;224736;224737;224738;224739	302907;302908;302909;302910;302911;302912;302913	302913			6	
MIINEELMASLDQPTQTVVMHR	0	Unmodified	2555.2546	0.25459984	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	92.991	92.702	3;4	3.2252E-58	81607	160511_QHF_FH_JSI11i_2	219.34	208.2			1.1171	1.1603	14.132	13	2	Median	1.4462	1.216	2.4055	2	0	Median	0.95707	1.1801	3.1034	2	0	Median	1.1532	1.1366	21.334	4	0	Median	1.1171	1.1466	14.895	5	2	Median	1707400000	798200000	909160000	177780000	67180000	110600000	208140000	111610000	96537000	559040000	247160000	311880000	762400000	372250000	390150000	36572	40	34519	224740;224741;224742;224743;224744;224745;224746;224747;224748;224749;224750;224751;224752	302914;302915;302916;302917;302918;302919;302920;302921;302922;302923;302924;302925;302926;302927;302928;302929;302930;302931;302932;302933	302925			18	
MIINEELMASLDQPTQTVVMHR	0	Oxidation (M)	2571.2495	0.24951446	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	1	0				By MS/MS	3	0			1										1	87.418	87.286	3	8.1884E-06	75761	160511_QHF_FH_JSI12i_3	78.324	70.612			0.99785	0.96825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99785	0.96825	NaN	1	1	Median	30827000	11068000	19759000	0	0	0	0	0	0	0	0	0	30827000	11068000	19759000	36573	40	34519	224753	302934;302935	302935		11	2	
MIIPSLEELDSLK	1	Unmodified	1486.7953	0.79528211	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			101.04	100.96	2	6.2179E-06	89444	160511_QHF_FH_JSI10i_2	127.42	69.464			0.61642	0.74862	3.1986	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61642	0.74862	3.1986	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	305380000	207590000	97795000	0	0	0	305380000	207590000	97795000	0	0	0	0	0	0	36574	4525	34520	224754;224755	302936;302937	302937			2	
MIKLFSLK	2	Acetyl (K);Acetyl (Protein N-term)	1062.6147	0.61473897	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	1	1	0	1			By MS/MS		15.5	0.5								1	1			2		98.123	88.711	2	0.0015946	50714	160513_QHF_FH_JSI11Kac_6	79.474	59.688			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36575	1935	34521	224756;224757	302938;302939	302938	1942;1943		2	
MIKPFFHSLSEK	2	Acetyl (K);Oxidation (M)	1520.7697	0.76973606	973	P10599	TXN	Thioredoxin	yes	yes	1	0	1	1	By MS/MS		By MS/MS	By MS/MS	16	0									8	2		3	3	70.14	60.78	2;3	0.00016611	32902	160513_QHF_FH_JSI11Kac_6	93.058	67.119			0.51626	0.48713	347.33	5	3	Median	1.3042	1.1126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.055419	0.053088	313.47	2	1	Median	0.5081	0.5376	549.8	2	2	Median	387630000	223460000	164170000	76594000	32461000	44133000	0	0	0	249740000	181340000	68401000	61304000	9668000	51636000	36576	973	34522	224758;224759;224760;224761;224762;224763;224764;224765	302940;302941;302942;302943;302944;302945;302946;302947;302948	302943	744	536	9	
MIKPFFHSLSEK	2	Acetyl (K)	1504.7748	0.77482144	973	P10599	TXN	Thioredoxin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	74.35	65.677	2;3	3.5735E-14	35663	160513_QHF_FH_JSI11Kac_6	172.8	143.85			1.1047	1.3102	213.03	7	4	Median	0.57618	0.48714	367.83	2	2	Median	1.0613	1.2561	5.9653	2	0	Median	23.163	22.035	NaN	1	1	Median	2.6207	2.7692	183.69	2	1	Median	3902900000	1932300000	1970600000	250020000	218300000	31715000	1666600000	859320000	807280000	1063600000	332240000	731400000	922610000	522390000	400220000	36577	973	34522	224766;224767;224768;224769;224770;224771;224772;224773;224774	302949;302950;302951;302952;302953;302954;302955;302956;302957	302950	744		9	
MILEIMHK	1	Unmodified	1013.5402	0.54019382	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89		5	4						3	3	2	5	2	54.119	50.869	2;3	0.00080898	27703	160513_QHF_FH_JSI11Kac_6	84.568	70.798			2.7011	3.0711	73.868	11	11	Median	2.6288	2.2327	32.529	3	3	Median	2.7573	3.3031	5.9283	2	2	Median	3.9419	3.876	127.83	4	4	Median	1.7992	1.9288	14.695	2	2	Median	423160000	157700000	265460000	57987000	18284000	39703000	69919000	21714000	48205000	232250000	85467000	146780000	63006000	32239000	30767000	36578	5153	34523	224775;224776;224777;224778;224779;224780;224781;224782;224783;224784;224785;224786	302958;302959;302960;302961;302962;302963;302964;302965;302966;302967;302968;302969	302962			12	
MILEKEAKSQKRAR	3	Oxidation (M)	1702.9512	0.95122267	4911	Q9NQ38	SPINK5	Serine protease inhibitor Kazal-type 5;Hemofiltrate peptide HF6478;Hemofiltrate peptide HF7665	yes	yes	0	0	1	4			By MS/MS	By MS/MS	16	0									2			1	1	98.395	88.969	2	0.014829	50927	160513_QHF_FH_JSI11Kac_6	44.318	16.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2189100000	2189100000	0	0	0	0	0	0	0	1440800000	1440800000	0	748330000	748330000	0	36579	4911	34524	224787;224788	302970;302971	302970		2553	2	
MILELFSK	1	Unmodified	979.54124	0.54123967	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	3	3	4	3	82.188	79.152	2	0.00026288	71701	160511_QHF_FH_JSI11i_2	133.12	47.03			2.8914	2.9498	67.862	13	13	Median	3.4763	2.9498	12.19	3	3	Plateau	2.519	3.152	35.899	3	3	Median	2.3828	2.3312	118.13	4	4	Median	2.8914	3.26	35.839	3	3	Median	2069500000	922600000	1146900000	294050000	108340000	185720000	466260000	215300000	250960000	846550000	411270000	435280000	462670000	187700000	274980000	36580	2093	34525	224789;224790;224791;224792;224793;224794;224795;224796;224797;224798;224799;224800;224801	302972;302973;302974;302975;302976;302977;302978;302979;302980;302981;302982;302983;302984;302985;302986;302987;302988	302982			17	
MILFAFGSALAQAR	0	Unmodified	1494.8017	0.80170489	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	3	2	4	92.014	83.72	2;3	9.5684E-24	46535	160513_QHF_FH_JSI9Kac_6	192.12	143.48			0.96768	1.0214	64.646	11	5	Median	1.0687	0.90462	36.933	2	0	Median	0.64094	0.74206	114.88	3	1	Median	1.0825	1.0384	11.032	2	0	Median	1.0066	1.0785	25.13	4	4	Median	938570000	554000000	384570000	158750000	86641000	72105000	376430000	260050000	116380000	191620000	97916000	93701000	211780000	109400000	102380000	36581	4558	34526	224802;224803;224804;224805;224806;224807;224808;224809;224810;224811;224812	302989;302990;302991;302992;302993;302994;302995;302996;302997;302998;302999;303000;303001;303002	302993			14	
MILFAFGSALAQAR	0	Oxidation (M)	1510.7966	0.79661951	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	87.989	78.547	2	0.010261	42050	160513_QHF_FH_JSI12Kac_6	67.207	43.602			0.50524	0.54677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50524	0.54677	NaN	1	0	Median	22594000	10883000	11710000	0	0	0	0	0	0	0	0	0	22594000	10883000	11710000	36582	4558	34526	224813	303003	303003		2494	0	
MILIQDGSQNTNVDK	1	Unmodified	1674.8247	0.82468476	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.11	9	3				4	5			3	7	3	8	52.069	47.402	2;3	1.8868E-117	43072	160511_QHF_FH_JSI11i_1	280.19	258.16			0.98946	1.0199	45.857	19	10	Median	1.1883	0.96207	63.706	3	2	Median	0.86298	1.0199	48.048	7	5	Median	0.86058	0.86376	5.5757	3	1	Plateau	1.0551	1.1434	44.099	6	2	Median	2833300000	1277300000	1556000000	684020000	275910000	408100000	622590000	286830000	335750000	671790000	319850000	351940000	854930000	394720000	460210000	36583	3911	34527	224814;224815;224816;224817;224818;224819;224820;224821;224822;224823;224824;224825;224826;224827;224828;224829;224830;224831;224832;224833;224834	303004;303005;303006;303007;303008;303009;303010;303011;303012;303013;303014;303015;303016;303017;303018;303019;303020;303021;303022;303023;303024;303025;303026;303027;303028;303029;303030;303031;303032;303033;303034;303035;303036;303037	303007			34	
MILIQDGSQNTNVDK	1	Oxidation (M)	1690.8196	0.81959938	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	1	0				By MS/MS	7	6	1					1							2	46.59	37.648	2	0.018976	34346	160511_QHF_FH_JSI12i_1	49.5	32.475			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	651560	651560	0	0	0	0	0	0	0	0	0	0	651560	651560	0	36584	3911	34527	224835;224836	303038;303039	303038		2343	2	
MILIQDGSQNTNVDKPLR	1	Unmodified	2041.0626	0.062623617	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	2	4	53.966	53.349	3	6.6052E-12	47343	160511_QHF_FH_JSI11i_3	150.59	142.11			1.4956	1.5271	58.732	7	5	Median	2.3845	1.9975	NaN	1	1	Median	0.92987	1.1405	NaN	1	0	Median	1.484	1.432	94.175	2	1	Median	0.94601	0.9568	70.587	3	3	Plateau	692010000	348730000	343270000	74131000	22585000	51546000	114440000	73833000	40606000	248330000	119200000	129140000	255100000	133120000	121980000	36585	3911	34528	224837;224838;224839;224840;224841;224842;224843;224844	303040;303041;303042;303043;303044;303045;303046;303047;303048	303041			9	
MILIYLLPVK	1	Unmodified	1201.7508	0.75083852	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	95.382	86.988	2;3	2.018E-24	48878	160513_QHF_FH_JSI11Kac_6	177.65	154.91			2.4198	2.7137	78.92	4	3	Median	5.337	4.512	NaN	1	1	Median	1.7183	2.0554	NaN	1	1	Median	0.80017	0.76645	NaN	1	0	Median	3.4077	3.5828	NaN	1	1	Median	1565500000	595800000	969650000	443960000	119020000	324950000	314530000	156950000	157580000	611950000	278740000	333210000	195000000	41090000	153910000	36586	2909	34529	224845;224846;224847;224848;224849	303049;303050;303051;303052;303053	303049			5	
MILIYLLPVK	1	Oxidation (M)	1217.7458	0.74575314	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	90.783	81.705	2	7.6464E-05	45491	160513_QHF_FH_JSI9Kac_6	100.45	79.549			2.3146	2.2403	8.1228	2	0	Median	2.7641	2.3727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9382	2.1152	NaN	1	0	Median	39567000	15410000	24157000	22872000	8374300	14498000	0	0	0	0	0	0	16695000	7035500	9659600	36587	2909	34529	224850;224851	303054;303055	303054		2166	1	
MILLEVNNR	0	Unmodified	1100.6012	0.60121417	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.72		4	2					1	4	2	3	3	3	60.905	56.246	2	5.3784E-05	48598	160511_QHF_FH_JSI11i_2	97.798	73.826			1.2033	1.1808	50.428	11	3	Median	1.7398	1.472	35.983	2	0	Median	0.81828	0.99019	21.927	3	1	Plateau	1.4012	1.4186	63.823	3	1	Median	1.1435	1.2709	60.761	3	1	Median	583420000	226280000	357140000	73919000	29850000	44069000	126740000	58877000	67868000	191860000	67106000	124750000	190900000	70445000	120450000	36588	256	34530	224852;224853;224854;224855;224856;224857;224858;224859;224860;224861;224862	303056;303057;303058;303059;303060;303061;303062;303063;303064;303065;303066	303060			10	
MILLGHNLGGFLAAAYSLK	1	Unmodified	1988.0917	0.091738901	3746	Q8WTS1	ABHD5	1-acylglycerol-3-phosphate O-acyltransferase ABHD5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			93.436	86.106	3	1.0389E-18	50096	160513_QHF_FH_JSI10Kac_6	141.86	125.37			2.7637	2.801	51.148	2	1	Median	4.6527	4.0215	NaN	1	1	Median	1.6417	1.9509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207740000	66593000	141140000	45831000	7568500	38262000	161910000	59025000	102880000	0	0	0	0	0	0	36589	3746	34531	224863;224864	303067;303068;303069	303068			3	
MILLTLTGQPR	0	Unmodified	1241.7166	0.71657828	798	P03915	MT-ND5	NADH-ubiquinone oxidoreductase chain 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	78.992	70.717	2	0.0015944	39256	160513_QHF_FH_JSI10Kac_6	93.111	72.209			1.0744	1.0412	39.561	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.46123	0.55137	NaN	1	1	Median	1.0744	1.0412	NaN	1	1	Median	1.0548	1.1394	NaN	1	0	Median	96033000	48449000	47584000	0	0	0	25651000	16931000	8720000	45706000	19083000	26623000	24676000	12435000	12241000	36590	798	34532	224865;224866;224867;224868	303070;303071;303072;303073	303073			4	
MILNLTQSSGFNGFTPLVTLLLR	0	Unmodified	2534.3931	0.39306588	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									5	2	2	1		100.69	92.849	2;3	0	55853	160513_QHF_FH_JSI10Kac_6	396.67	371.02			1.0591	1.1826	34.078	5	0	Median	0.9876	0.83512	49.195	2	0	Median	1.0671	1.2588	1.3732	2	0	Median	0.81114	0.79086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	976670000	488850000	487820000	265040000	122860000	142180000	679580000	343410000	336160000	32056000	22571000	9484800	0	0	0	36591	3290	34533	224869;224870;224871;224872;224873	303074;303075;303076;303077;303078	303077			4	
MILTFEK	1	Unmodified	880.47283	0.47282576	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS				2.5	0.5		1	1							2				55.645	54.624	2	0.023076	44671	160511_QHF_FH_JSI9i_3	50.127	1.953			1.3536	1.1735	NaN	1	0	Median	1.3536	1.1735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78947000	32684000	46263000	78947000	32684000	46263000	0	0	0	0	0	0	0	0	0	36592	3817	34534	224874;224875	303079;303080	303079			2	
MIMALVSDSALFNTR	0	Unmodified	1667.8375	0.83749805	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.38		5	7						3	3	8	2	2	95.466	94.106	2;3	4.8561E-10	46456	160513_QHF_FH_JSI10Kac_6	164.81	138.87			1.2818	1.31	110.22	14	14	Median	3.1429	2.7441	137.75	3	3	Plateau	0.47198	0.57837	112.94	7	7	Median	2.6258	2.5796	5.9986	2	2	Median	1.107	1.1074	139.63	2	2	Median	344860000	193020000	151840000	28066000	7730800	20335000	217030000	144540000	72493000	32977000	6818900	26158000	66779000	33928000	32851000	36593	1604	34535	224876;224877;224878;224879;224880;224881;224882;224883;224884;224885;224886;224887;224888;224889;224890	303081;303082;303083;303084;303085;303086;303087;303088;303089;303090;303091;303092;303093;303094;303095	303094			15	
MIMGIIQQK	1	Unmodified	1060.5773	0.5773076	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		61.749	52.7	2	1.2268E-05	28508	160513_QHF_FH_JSI11Kac_6	107.43	101.65			3.2045	3.4225	32.519	2	2	Median	NaN	NaN	NaN	0	0	Median	3.5852	4.3073	NaN	1	1	Median	2.8642	2.7194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44006000	14236000	29771000	0	0	0	25947000	8294700	17652000	18060000	5941200	12118000	0	0	0	36594	614	34536	224891;224892	303096;303097	303096			2	
MIMSFEMK	1	Unmodified	1015.4541	0.45408093	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.251	60.937	2	0.034605	52236	160511_QHF_FH_JSI12i_2	49.097	31.061			1.4018	1.5612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4018	1.5612	NaN	1	1	Median	27745000	10212000	17533000	0	0	0	0	0	0	0	0	0	27745000	10212000	17533000	36595	238	34537	224893	303098	303098			1	
MININILSVCK	1	Unmodified	1303.6992	0.69921365	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.486	82.883	2	0.0034222	72897	160511_QHF_FH_JSI11i_2	68.626	57.136			0.54426	0.53073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54426	0.53073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10090000	6426200	3663700	0	0	0	0	0	0	10090000	6426200	3663700	0	0	0	36596	2854	34538	224894	303099	303099			1	
MINLSEPDTIDER	0	Unmodified	1531.7188	0.7188227	2551	Q14651	PLS1	Plastin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		57.378	56.728	2	0.0022611	51172	160511_QHF_FH_JSI10i_1	84.687	71.024			0.74837	0.93517	5.173	3	3	Plateau	1.1184	0.93517	NaN	1	1	Median	0.74837	0.87928	NaN	1	1	Median	1.0194	0.97446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132440000	77476000	54966000	38074000	21436000	16638000	47006000	31118000	15887000	47362000	24921000	22441000	0	0	0	36597	2551	34539	224895;224896;224897	303100;303101;303102	303101			3	
MINLSVPDTIDER	0	Unmodified	1501.7446	0.74464352	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	4	2	72.122	71.411	2	3.9634E-22	65084	160511_QHF_FH_JSI12i_1	175.15	152.41			1.0019	1.0336	12.707	12	2	Median	1.3066	1.0797	4.3339	3	0	Median	0.88031	1.0176	8.1022	3	0	Median	0.9626	0.9641	20.867	4	2	Median	0.93601	1.0286	14.354	2	0	Median	5379200000	2770800000	2608400000	868370000	406150000	462210000	1528200000	830090000	698070000	1645100000	861920000	783210000	1337500000	672610000	664890000	36598	1039	34540	224898;224899;224900;224901;224902;224903;224904;224905;224906;224907;224908;224909	303103;303104;303105;303106;303107;303108;303109;303110;303111;303112;303113;303114;303115;303116;303117;303118;303119;303120;303121;303122;303123;303124	303111			22	
MINLSVPDTIDER	0	Oxidation (M)	1517.7396	0.73955814	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	1	0	By MS/MS				2	0		1								1				66.779	65.869	2	0.0023845	58026	160511_QHF_FH_JSI9i_2	64.439	41.119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36599	1039	34540	224910	303125	303125		655	1	
MINTDLSR	0	Unmodified	948.46987	0.46986564	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.24	4	5	2			1	3	4		6	4	4	5	28.767	23.85	2	3.8035E-05	21421	160511_QHF_FH_JSI11i_2	137.18	107.8			1.0393	1.0569	66.829	19	2	Median	1.3523	1.1286	82.793	6	1	Median	0.86766	1.0261	11.546	4	0	Median	1.0489	1.0517	44.097	4	0	Median	1.0575	1.129	97.394	5	1	Median	11719000000	5965600000	5753900000	2214100000	1011900000	1202200000	2492900000	1383900000	1109000000	3564900000	1861000000	1703900000	3447500000	1708800000	1738700000	36600	1457	34541	224911;224912;224913;224914;224915;224916;224917;224918;224919;224920;224921;224922;224923;224924;224925;224926;224927;224928;224929	303126;303127;303128;303129;303130;303131;303132;303133;303134;303135;303136;303137;303138;303139;303140;303141;303142;303143;303144;303145;303146;303147;303148;303149	303145			24	
MINTDLSR	0	Oxidation (M)	964.46478	0.46478027	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	11.4	4.72		1				1	3					2	3	27.705	19.914	2	0.0058887	12522	160513_QHF_FH_JSI11Kac_4	85.064	60.141			1.4538	1.5951	26.34	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6983	1.685	NaN	1	1	Median	1.1849	1.2889	30.145	2	0	Median	46100000	15961000	30139000	0	0	0	0	0	0	30439000	9006700	21432000	15661000	6954500	8706500	36601	1457	34541	224930;224931;224932;224933;224934	303150;303151;303152;303153;303154	303151		1125	5	
MIPCDFLIPVQTQHPIRK	1	Unmodified	2192.1598	0.15983524	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							4	3	2	1	76.285	75.461	3;4	6.5032E-07	63410	160511_QHF_FH_JSI10i_3	98.507	89.907			0.86706	0.88766	52.732	10	1	Median	1.0262	0.83083	82.421	4	1	Median	0.77344	0.90962	6.8025	3	0	Median	0.82686	0.79601	18.304	2	0	Median	0.93377	0.95178	NaN	1	0	Median	2051600000	1196700000	854810000	428590000	229250000	199340000	722710000	372390000	350320000	781900000	529530000	252370000	118360000	65570000	52791000	36602	856	34542	224935;224936;224937;224938;224939;224940;224941;224942;224943;224944	303155;303156;303157;303158;303159;303160;303161;303162;303163;303164;303165;303166;303167;303168;303169;303170;303171;303172;303173;303174;303175;303176;303177;303178;303179;303180	303160			25	
MIPCDFLIPVQTQHPIRK	1	Oxidation (M)	2208.1547	0.15474986	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			3							2	1			71.559	70.086	3;4	1.6225E-05	58655	160511_QHF_FH_JSI10i_3	81.428	77.075			0.75463	0.83636	5.8437	3	2	Plateau	1.0116	0.84432	8.2279	2	2	Median	0.72722	0.83636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99411000	61084000	38328000	48396000	29094000	19303000	51015000	31990000	19025000	0	0	0	0	0	0	36603	856	34542	224945;224946;224947	303181;303182;303183	303181		389	3	
MIPPGIHFLHYSSVDK	1	Unmodified	1839.9342	0.93417563	5553	Q9Y312	AAR2	Protein AAR2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			7						7	4	2	4	4	70.997	65.803	3;4	1.9115E-11	34532	160513_QHF_FH_JSI9Kac_6	124.16	104.49			1.0492	1.0472	32.972	12	8	Median	1.0106	0.86609	49.426	3	2	Median	0.61105	0.71492	39.774	2	2	Median	1.1204	1.0757	19.393	4	2	Median	1.0112	1.0198	20.2	3	2	Plateau	1255400000	617010000	638410000	153700000	66472000	87231000	367390000	254080000	113310000	419820000	177870000	241960000	314490000	118580000	195910000	36604	5553	34543	224948;224949;224950;224951;224952;224953;224954;224955;224956;224957;224958;224959;224960;224961	303184;303185;303186;303187;303188;303189;303190;303191;303192;303193;303194;303195;303196;303197;303198;303199	303191			15	
MIPPTKPEIQAK	2	Unmodified	1351.7534	0.75335771	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.674	35.547	3	0.0018266	30145	160511_QHF_FH_JSI12i_3	54.7	46.813			0.96181	0.97115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96181	0.97115	NaN	1	0	Median	55354000	28395000	26960000	0	0	0	0	0	0	0	0	0	55354000	28395000	26960000	36605	3436	34544	224962	303200	303200			1	
MIPVTELR	0	Acetyl (Protein N-term)	999.5423	0.54230231	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.443	79.931	2	0.0046823	72515	160511_QHF_FH_JSI10i_1	65.038	51.366			1.6728	1.3454	NaN	1	0	Median	1.6728	1.3454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12187000	3999700	8187400	12187000	3999700	8187400	0	0	0	0	0	0	0	0	0	36606	3428	34545	224963;224964;224965;224966	303201;303202;303203;303204	303203			4	
MIPVTELR	0	Acetyl (Protein N-term);Oxidation (M)	1015.5372	0.53721693	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	1	1	0		By matching	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	5.0667	4.8971	3	0.011134	2680	160511_QHF_FH_JSI11i_2	55.676	41.469			1.525	1.5109	40.591	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.62056	0.74335	NaN	1	0	Median	0.82333	0.82655	NaN	1	0	Median	1.5439	1.5738	NaN	1	0	Median	292760000	138350000	154400000	0	0	0	64690000	33446000	31244000	86272000	47342000	38931000	141800000	57566000	84230000	36607	3428	34545	224967;224968;224969	303205	303205		2258	0	
MIQAILVFNNHGK	1	Unmodified	1483.797	0.79695386	1904	P59780	AP3S2	AP-3 complex subunit sigma-2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		73.984	64.629	3	3.4696E-07	35102	160513_QHF_FH_JSI11Kac_6	128.85	113.09			0.7783	0.75096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7783	0.75096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16840000	11194000	5646700	0	0	0	0	0	0	16840000	11194000	5646700	0	0	0	36608	1904	34546	224970	303206	303206			1	
MIQDGKGDVTITNDGATILK	2	Unmodified	2089.0725	0.072519601	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.63	0.581	8	10	1							4	5	5	5	58.002	57.153	2;3	9.4458E-17	52003	160511_QHF_FH_JSI11i_1	170.53	136.68			1.1931	1.1875	65.062	16	15	Median	2.2601	1.906	65.753	3	2	Plateau	0.67504	0.81969	83.366	4	4	Median	0.86926	0.88062	58.825	4	4	Median	1.5699	1.6483	67.928	5	5	Median	3207100000	1626500000	1580600000	500880000	222780000	278100000	821690000	506710000	314980000	896370000	457560000	438810000	988120000	439450000	548670000	36609	1722	34547	224971;224972;224973;224974;224975;224976;224977;224978;224979;224980;224981;224982;224983;224984;224985;224986;224987;224988;224989	303207;303208;303209;303210;303211;303212;303213;303214;303215;303216;303217;303218;303219;303220;303221;303222;303223;303224;303225;303226	303208			20	
MIQEVMHSLVK	1	Unmodified	1313.6836	0.68356359	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.13	53.756	3	0.011847	46080	160511_QHF_FH_JSI12i_2	37.998	30.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36610	4159	34548	224990	303227	303227			1	
MIQHAVFK	1	Unmodified	972.52151	0.52150728	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			22.125	20.92	3	0.024263	17189	160511_QHF_FH_JSI10i_3	35.295	24.422			8.7951	10.348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.7951	10.348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44266000	6023700	38242000	0	0	0	44266000	6023700	38242000	0	0	0	0	0	0	36611	1929	34549	224991	303228	303228			1	
MIQHAVFKELVK	2	Acetyl (K)	1483.8221	0.82210598	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.1	61.636	3	0.00036771	33361	160513_QHF_FH_JSI11Kac_6	79.466	58.513			0.23058	0.23279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23058	0.23279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7507100	6604100	903050	0	0	0	0	0	0	7507100	6604100	903050	0	0	0	36612	1929	34550	224992	303229	303229	1938		1	
MIQIQENMAEQK	1	Unmodified	1461.6956	0.69558484	617	O94880	PHF14	PHD finger protein 14	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	44.489	43.844	2	0.0001394	39884	160511_QHF_FH_JSI12i_1	100.88	76.848			1.3016	1.359	34.74	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3016	1.359	34.74	2	2	Median	68521000	31079000	37442000	0	0	0	0	0	0	0	0	0	68521000	31079000	37442000	36613	617	34551	224993;224994	303230;303231	303231			2	
MIQPSASGSLVGR	0	Unmodified	1301.6762	0.67617003	536	O75496	GMNN	Geminin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	41.802	40.954	2	0.0019005	36108	160511_QHF_FH_JSI11i_3	70.977	27.731			1.2788	1.0779	21.85	4	4	Linear	1.3189	1.1014	NaN	1	1	Median	0.86534	1.0549	NaN	1	1	Median	0.8674	0.79524	NaN	1	1	Median	1.175	1.3519	NaN	1	1	Median	200380000	101580000	98799000	68036000	30477000	37559000	37847000	22579000	15268000	28280000	16175000	12105000	66216000	32349000	33868000	36614	536	34552	224995;224996;224997;224998	303232;303233;303234;303235	303232			4	
MIQPSASGSLVGRENELSAGLSK	1	Unmodified	2330.19	0.19000897	536	O75496	GMNN	Geminin	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				62.823	61.877	3	0.039448	54384	160511_QHF_FH_JSI9i_2	27.61	8.0567			1.6731	1.4192	NaN	1	1	Median	1.6731	1.4192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39415000	12636000	26779000	39415000	12636000	26779000	0	0	0	0	0	0	0	0	0	36615	536	34553	224999	303236	303236			1	
MIQVYFPK	1	Unmodified	1024.5416	0.54157402	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.01		1						3	2	2	1	2	1	71.491	63.422	2	0.0007087	34310	160513_QHF_FH_JSI11Kac_6	107.43	62.737			0.6707	0.56624	47.338	5	3	Median	0.71398	0.59956	8.0872	2	2	Median	0.72691	0.86435	NaN	1	0	Median	0.57866	0.53282	NaN	1	0	Median	0.21835	0.24107	NaN	1	1	Median	343580000	263290000	80284000	35274000	18879000	16395000	4603100	2706100	1897000	55465000	35453000	20012000	248240000	206260000	41980000	36616	2104	34554	225000;225001;225002;225003;225004;225005	303237;303238;303239;303240;303241;303242;303243;303244	303239			8	
MISAAQLLDELMGR	0	Acetyl (Protein N-term)	1588.7953	0.79529888	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	3	1	104.43	104.36	2	2.1095E-34	92134	160511_QHF_FH_JSI9i_2	240.21	204.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36617	660	34555	225006;225007;225008;225009;225010;225011	303245;303246;303247;303248;303249;303250	303248			6	
MISDAIPELK	1	Oxidation (M)	1131.5846	0.58456105	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By matching	3.6	5.2	4						1			1	1	2	1	57.947	55.208	2	0.0036889	30818	160513_QHF_FH_JSI11Kac_4	62.823	46.047			0.87984	0.95661	14.939	5	0	Median	1.308	1.07	NaN	1	0	Median	0.80304	0.95661	NaN	1	0	Median	1.0553	1.0263	26.626	2	0	Median	0.85439	0.902	NaN	1	0	Median	337770000	188000000	149770000	72875000	37259000	35616000	75702000	49891000	25811000	84458000	45042000	39416000	104730000	55807000	48927000	36618	1504	34556	225012;225013;225014;225015;225016	303251;303252;303253	303252		1183	3	
MISDAIPELK	1	Unmodified	1115.5896	0.58964643	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			2	4	2	4	63.194	60.557	2	1.562E-09	55387	160511_QHF_FH_JSI12i_1	133.57	117.37			0.93138	0.99029	37.93	11	2	Median	1.3386	1.0911	3.8589	2	0	Median	0.78151	0.93286	66.106	4	1	Median	0.91498	0.91922	1.9614	2	0	Median	0.94752	1.0246	11.02	3	1	Plateau	7601900000	3858900000	3742900000	1577000000	674570000	902440000	1950800000	1045700000	905110000	2294400000	1191900000	1102600000	1779600000	946780000	832790000	36619	1504	34556	225017;225018;225019;225020;225021;225022;225023;225024;225025;225026;225027;225028	303254;303255;303256;303257;303258;303259;303260;303261;303262;303263;303264;303265;303266;303267;303268;303269;303270;303271;303272;303273;303274;303275;303276;303277;303278;303279;303280;303281;303282;303283;303284	303265			31	
MISFSSGGENPHGVK	1	Unmodified	1545.7246	0.72457678	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	33.704	33.594	3	2.4088E-05	28550	160511_QHF_FH_JSI12i_3	111.81	105.33			1.5366	1.5769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5366	1.5769	NaN	1	1	Median	112280000	41651000	70624000	0	0	0	0	0	0	0	0	0	112280000	41651000	70624000	36620	3407	34557	225029	303285	303285			1	
MISGMYLGEIVR	0	Unmodified	1367.6941	0.69412828	1785;1155	P52789;P52790;P19367	HK2;HK3;HK1	Hexokinase-2;Hexokinase-3;Hexokinase-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.67	6.6		2							1	1	1	1		80.305	76.983	2	0.0007505	69815	160511_QHF_FH_JSI11i_2	88.056	70.192			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36621	1785;1155	34558	225030;225031;225032	303286;303287;303288	303286			3	
MISGMYMGELVR	0	Unmodified	1385.6505	0.6505489	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6.67	6.6		2							1		1	2		74.813	71.241	2	0.0012276	63499	160511_QHF_FH_JSI11i_2	76.143	56.356			1.6465	1.6194	34.501	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3382	1.6832	NaN	1	1	Median	1.2625	1.2134	40.822	2	1	Median	NaN	NaN	NaN	0	0	Median	271800000	120620000	151180000	0	0	0	95654000	39788000	55866000	176150000	80830000	95316000	0	0	0	36622	1785	34559	225033;225034;225035	303289;303290;303291	303290			3	
MISLSYSR	0	Unmodified	955.4797	0.47970205	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.61		4	3					1	4	3	3	3	3	45.446	40.998	2	0.00065104	22227	160513_QHF_FH_JSI11Kac_6	108.7	89.914			1.0596	1.0796	18.154	12	0	Median	1.2765	1.0832	16.542	3	0	Median	0.87431	1.0805	15.684	3	0	Plateau	1.0725	1.0787	14.549	3	0	Median	0.82091	0.88255	24.069	3	0	Median	1410100000	666690000	743390000	182810000	69783000	113030000	366370000	177660000	188710000	461450000	199590000	261870000	399450000	219660000	179790000	36623	313	34560	225036;225037;225038;225039;225040;225041;225042;225043;225044;225045;225046;225047	303292;303293;303294;303295;303296;303297;303298;303299;303300;303301;303302;303303;303304;303305;303306;303307;303308;303309	303297			18	
MISLTDTQK	1	Acetyl (Protein N-term)	1077.5376	0.53761086	5592	Q9Y3E0	GOLT1B	Vesicle transport protein GOT1B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						2	1	1	1	63.157	62.525	2	9.4809E-08	56586	160511_QHF_FH_JSI10i_1	103.83	87.679			1.0128	1.0182	4.1273	4	0	Median	1.1542	0.95644	NaN	1	0	Median	0.88697	1.0558	NaN	1	0	Median	1.0533	1.0234	NaN	1	0	Median	0.97385	1.013	NaN	1	0	Median	632490000	312860000	319640000	152010000	66442000	85572000	181490000	98031000	83459000	146630000	72366000	74261000	152360000	76017000	76344000	36624	5592	34561	225048;225049;225050;225051;225052	303310;303311;303312;303313;303314;303315;303316;303317;303318	303315			9	
MISLTDTQK	1	Acetyl (Protein N-term);Oxidation (M)	1093.5325	0.53252548	5592	Q9Y3E0	GOLT1B	Vesicle transport protein GOT1B	yes	yes	0	1	1	0			By MS/MS	By MS/MS	11.7	0.471				1	2							1	2	53.381	44.025	2	0.0030677	18052	160513_QHF_FH_JSI12Kacf_1	38.086	31.262			0.97669	1.0271	2.6727	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0208	0.99687	NaN	1	0	Median	0.973	1.0392	1.6606	2	0	Median	5077700	2563200	2514500	0	0	0	0	0	0	1242900	562080	680850	3834800	2001100	1833600	36625	5592	34561	225053;225054;225055	303319;303320	303320		2702	2	
MITAAYVPLPTYHNLFPDSMTATQLLVPSRR	0	Unmodified	3502.8105	0.81050202	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	92.928	85.347	4	3.4526E-49	49566	160513_QHF_FH_JSI10Kac_6	157.42	141.53			1.1801	1.3361	10.013	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1875	1.4342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1726	1.2448	NaN	1	1	Median	331590000	120980000	210610000	0	0	0	277440000	108250000	169190000	0	0	0	54147000	12726000	41421000	36626	2538	34562	225056;225057	303321;303322;303323	303323			3	
MITEGGVSINHQQVTNPESVLIVGQHILK	1	Unmodified	3140.6652	0.66521799	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	1	4	89.232	89.03	3;4	2.0824E-27	77164	160511_QHF_FH_JSI12i_3	132.24	130.05			0.99787	0.92519	42.251	6	2	Median	1.0793	0.94318	NaN	1	0	Median	0.69205	0.82608	NaN	1	0	Median	1.2034	1.1401	NaN	1	0	Median	0.92257	0.90755	64.778	3	2	Median	599240000	326860000	272380000	45708000	25612000	20096000	63862000	37877000	25985000	108850000	56827000	52022000	380820000	206550000	174270000	36627	5549	34563	225058;225059;225060;225061;225062;225063;225064	303324;303325;303326;303327;303328;303329;303330;303331;303332;303333	303330			10	
MITGDSQETAVAIASR	0	Unmodified	1648.809	0.80903469	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	1	3	47.749	47.073	2	1.3026E-21	42546	160511_QHF_FH_JSI11i_1	173.25	137.74			0.85173	0.83824	19.851	5	3	Median	0.85294	0.69306	NaN	1	0	Median	0.85173	1.0187	NaN	1	1	Median	0.98352	0.95801	NaN	1	0	Median	0.70423	0.73531	18.527	2	2	Median	384700000	200780000	183920000	81715000	38924000	42792000	64205000	35931000	28274000	86716000	44903000	41813000	152070000	81026000	71042000	36628	2142	34564	225065;225066;225067;225068;225069;225070	303334;303335;303336;303337;303338;303339;303340;303341	303335			8	
MITIDGK	1	Unmodified	776.41023	0.4102255	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							4	3	3	1	29.78	28.956	2	0.0087617	24994	160511_QHF_FH_JSI9i_2	85.265	40.654			1.3339	1.4323	117.3	11	8	Median	2.7477	2.2775	141.59	4	3	Median	0.34431	0.4195	86.506	3	3	Plateau	0.99752	1.0087	157.37	3	2	Median	1.3339	1.4323	NaN	1	0	Median	2013000000	958450000	1054500000	413960000	159120000	254840000	638150000	358260000	279890000	723550000	326030000	397520000	237290000	115040000	122250000	36629	1930	34565	225071;225072;225073;225074;225075;225076;225077;225078;225079;225080;225081	303342;303343;303344;303345;303346;303347;303348;303349;303350;303351;303352	303347			11	
MITMYGNR	0	Unmodified	984.45211	0.45210709	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	30.304	29.432	2	0.0057259	24876	160511_QHF_FH_JSI11i_2	64.757	53.389			0.65764	0.67004	32.339	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.96417	1.1609	NaN	1	1	Median	0.61436	0.62033	NaN	1	0	Median	0.87809	0.9746	NaN	1	0	Median	140700000	87488000	53213000	0	0	0	42426000	25086000	17340000	61561000	39672000	21889000	36715000	22730000	13985000	36630	5327	34566	225082;225083;225084	303353;303354;303355;303356	303355			4	
MITSAAGIISLLDEDEPQLK	1	Unmodified	2143.1082	0.10823641	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.82	101.71	3	7.0324E-19	87603	160511_QHF_FH_JSI12i_2	157.11	137.02			0.88534	0.89995	19.691	4	2	Median	1.0626	0.90432	NaN	1	0	Median	0.72002	0.8956	NaN	1	1	Median	1.2683	1.2986	NaN	1	1	Median	0.73764	0.84238	NaN	1	0	Median	1005500000	521740000	483730000	210990000	108690000	102300000	216090000	106830000	109260000	281530000	115160000	166370000	296860000	191070000	105790000	36631	4272	34567	225085;225086;225087;225088	303357;303358;303359;303360;303361	303357			5	
MIVDPVEPHGEMK	1	Unmodified	1480.7054	0.70542124	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.41	3	8	6					5		6	4	7	5	45.792	42.693	2;3	4.478E-10	36659	160511_QHF_FH_JSI11i_2	138.42	134.36			0.95797	1.0096	32.849	20	7	Median	1.1683	0.94877	29.16	5	2	Median	0.89453	1.0618	36.336	4	1	Median	0.98598	0.97081	37.086	6	2	Median	0.78813	0.88862	31.213	5	2	Median	5051400000	2457300000	2594100000	880280000	334070000	546210000	1280400000	689210000	591170000	1748100000	824950000	923170000	1142600000	609070000	533520000	36632	2380	34568	225089;225090;225091;225092;225093;225094;225095;225096;225097;225098;225099;225100;225101;225102;225103;225104;225105;225106;225107;225108;225109;225110	303362;303363;303364;303365;303366;303367;303368;303369;303370;303371;303372;303373;303374;303375;303376;303377;303378;303379;303380;303381;303382;303383;303384;303385;303386;303387;303388;303389;303390;303391;303392;303393;303394;303395;303396;303397	303383			36	
MIVHVPFGTR	0	Unmodified	1155.6223	0.62228396	1715	P50747	HLCS	Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			55.894	54.337	3	0.013758	45433	160511_QHF_FH_JSI10i_3	33.875	31.351			1.0037	0.97472	67.241	2	0	Median	1.9079	1.5681	NaN	1	0	Median	0.52798	0.60588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35352000	17295000	18056000	20912000	8613900	12298000	14439000	8681600	5757800	0	0	0	0	0	0	36633	1715	34569	225111;225112	303398;303399;303400;303401	303399			4	
MIVKNYAYKPSK	3	Acetyl (K)	1482.7905	0.7904715	5323	Q9UI26	IPO11	Importin-11	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		48.679	38.978	3	0.03771	21208	160513_QHF_FH_JSI11Kac_6	48.704	36.728			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5400700	5400700	0	0	0	0	0	0	0	5400700	5400700	0	0	0	0	36634	5323	34570	225113	303402	303402			1	
MIVLGFSNPINWVR	0	Unmodified	1644.881	0.88101784	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	94.917	86.315	2	4.3398E-97	50859	160513_QHF_FH_JSI10Kac_6	256.91	226.34			1.0719	1.1661	10.931	5	2	Median	1.385	1.1661	NaN	1	0	Median	1.034	1.2338	NaN	1	0	Median	1.0719	1.0322	NaN	1	0	Median	1.141	1.2226	15.949	2	2	Median	838710000	391080000	447620000	139820000	56139000	83685000	417890000	210940000	206950000	105520000	49722000	55795000	175470000	74281000	101190000	36635	3797	34571	225114;225115;225116;225117;225118	303403;303404;303405;303406;303407;303408	303408			6	
MIVMGHR	0	Unmodified	842.4255	0.42549841	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			20.499	13.662	2	0.002272	8271	160513_QHF_FH_JSI10Kac_6	103.7	98.218			0.72096	0.85608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72096	0.85608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10690000	6130000	4559800	0	0	0	10690000	6130000	4559800	0	0	0	0	0	0	36636	1459	34572	225119	303409	303409			1	
MIVQENK	1	Unmodified	860.44259	0.44258826	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	13.248	12.457	2	0.017066	9802	160511_QHF_FH_JSI12i_2	55.504	16.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36637	3079	34573	225120	303410	303410			1	
MIVTDIYNHR	0	Unmodified	1260.6285	0.62849155	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.76	42.788	3	7.8319E-07	36731	160511_QHF_FH_JSI11i_2	104.48	88.945			0.81877	0.87039	16.313	4	0	Median	0.8595	0.75347	NaN	1	0	Median	0.68925	0.85583	NaN	1	0	Median	1.1261	1.1145	NaN	1	0	Median	0.77997	0.88519	NaN	1	0	Median	183230000	94630000	88601000	27404000	15453000	11950000	60761000	31501000	29260000	44013000	20484000	23529000	51054000	27192000	23862000	36638	5626	34574	225121;225122;225123;225124	303411;303412;303413;303414	303413			3	
MIVVLGEIGGTEEYK	1	Unmodified	1636.8382	0.83820956	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	81.649	80.832	2;3	9.0411E-07	71178	160511_QHF_FH_JSI9i_2	130.56	113.89			1.6938	1.679	20.729	6	4	Median	1.9076	1.6412	18.521	2	1	Median	1.3125	1.6013	NaN	1	1	Median	1.7325	1.7606	NaN	1	1	Median	1.3577	1.4779	39.689	2	1	Median	215780000	86932000	128850000	53677000	18522000	35155000	35256000	14918000	20338000	62838000	26242000	36597000	64007000	27250000	36758000	36639	1798	34575	225125;225126;225127;225128;225129;225130	303415;303416;303417;303418;303419;303420	303416			5	
MIWWANK	1	Unmodified	947.46874	0.46874343	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							3	3	2	3	60.011	59.077	2	0.0042459	49386	160511_QHF_FH_JSI10i_3	126.05	109.27			0.65585	0.61157	84.809	11	11	Median	2.1252	1.87	79.017	3	3	Median	0.86244	1.0112	77.186	3	3	Plateau	0.47922	0.45978	40.345	2	2	Median	1.5548	1.787	120.07	3	3	Median	1817500000	920240000	897220000	327830000	134330000	193490000	512950000	268310000	244640000	280830000	159950000	120880000	695860000	357650000	338210000	36640	3860	34576	225131;225132;225133;225134;225135;225136;225137;225138;225139;225140;225141	303421;303422;303423;303424;303425;303426;303427;303428;303429;303430;303431;303432	303423			12	
MIYASSK	1	Unmodified	798.39458	0.39457544	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.52	6	7	6			1	3	4	6	9	6	9	9	15.239	11.186	2	0.0026708	6822	160513_QHF_FH_JSI12Kac_5	94.407	77.48			0.56229	0.66003	106.64	33	31	Median	1.2581	1.0199	104.49	9	8	Median	0.6411	0.75968	107.77	6	5	Median	0.4581	0.45173	103.08	9	9	Median	0.37329	0.4065	128.81	9	9	Median	53692000000	28154000000	25538000000	12706000000	6084900000	6621000000	8252300000	3798400000	4453800000	18176000000	10359000000	7817100000	14558000000	7912300000	6645800000	36641	1236;5500;1925	34577	225142;225143;225144;225145;225146;225147;225148;225149;225150;225151;225152;225153;225154;225155;225156;225157;225158;225159;225160;225161;225162;225163;225164;225165;225166;225167;225168;225169;225170;225171;225172;225173;225174	303433;303434;303435;303436;303437;303438;303439;303440;303441;303442;303443;303444;303445;303446;303447;303448;303449;303450;303451;303452;303453;303454;303455;303456;303457;303458;303459;303460;303461;303462;303463;303464;303465;303466;303467;303468;303469;303470	303460			38	
MIYASSK	1	Oxidation (M)	814.38949	0.38949006	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	4.23	3	5						1		3	1	2	3	10.814	9.3258	2	0.012439	9837	160511_QHF_FH_JSI11i_2	84.244	43.558			1.2543	1.069	104.39	9	1	Median	1.6822	1.4057	154.23	3	1	Median	0.8045	0.96021	NaN	1	0	Median	1.9135	1.9439	136.5	2	0	Median	0.92795	1.0563	41.123	3	0	Median	4006100000	1750800000	2255300000	898480000	267270000	631210000	580820000	345380000	235450000	1142500000	468410000	674090000	1384300000	669760000	714520000	36642	1236;5500;1925	34577	225175;225176;225177;225178;225179;225180;225181;225182;225183	303471;303472;303473;303474;303475;303476;303477;303478;303479;303480;303481	303479		869	11	
MIYASSKDAIK	2	Acetyl (K);Oxidation (M)	1283.6431	0.64313856	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	2	1	44.57	34.654	2	7.6076E-05	19552	160513_QHF_FH_JSI10Kac_4	91.584	48.337			0.63692	0.68223	53.868	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.0887	1.3136	NaN	1	0	Median	1.1468	1.1274	87.259	2	1	Median	0.76637	0.83339	NaN	1	0	Median	40878000	27959000	12918000	0	0	0	9100800	4864200	4236600	21518000	16161000	5356900	10259000	6933900	3324700	36643	1236;5500;1925	34578	225184;225185;225186;225187	303482;303483;303484;303485;303486;303487;303488;303489	303482	1129	869	8	
MIYASSKDAIK	2	Acetyl (K)	1267.6482	0.64822394	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0.707						1	2	1			2	1	1	52.004	41.817	2	0.002061	24388	160513_QHF_FH_JSI11Kac_4	77.677	49.279			0.70009	0.76436	55.98	2	0	Median	NaN	NaN	NaN	0	0	Median	0.947	1.1356	NaN	1	0	Median	0.51756	0.5145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122590000	70235000	52358000	0	0	0	45474000	21151000	24323000	74401000	46366000	28035000	2718200	2718200	0	36644	1236;5500;1925	34578	225188;225189;225190;225191	303490;303491;303492	303490	1129		3	
MIYASSKDAIKK	3	Acetyl (K)	1395.7432	0.74318696	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	1	0	0	2			By MS/MS	By MS/MS	15	0								3				2	1	44.325	34.091	3	0.0073286	19292	160513_QHF_FH_JSI11Kac_5	62.732	49.532			0.83807	0.8273	268.7	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83807	0.8273	317.27	2	2	Median	10.039	10.718	NaN	1	1	Median	17445000	8436800	9008600	0	0	0	0	0	0	14027000	8132700	5894400	3418200	304030	3114200	36645	1236;5500;1925	34579	225192;225193;225194	303493;303494;303495	303493	1129		3	
MIYSSSNLK	1	Unmodified	1041.5165	0.51648149	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		27.657	27.294	2	0.0044301	22930	160511_QHF_FH_JSI11i_2	67.169	38.657			2.0166	2.0143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0166	2.0143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25575000	10016000	15559000	0	0	0	0	0	0	25575000	10016000	15559000	0	0	0	36646	5220	34580	225195;225196	303496;303497	303496			2	
MKDEPEVEEEEEEEEEEEK	2	Unmodified	2393.9428	0.94280638	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		33.028	32.789	3	1.2961E-11	29380	160511_QHF_FH_JSI11i_1	111.66	107.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36647	4505	34581	225197	303498	303498			1	
MKDTDSEEEIR	1	Unmodified	1351.5926	0.59255956	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								2	3	4	2	12.309	11.881	2;3	3.1134E-18	9204	160511_QHF_FH_JSI11i_2	138.42	123.39			0.88134	0.90841	15.541	11	1	Median	0.97655	0.82422	13.753	2	0	Median	0.77847	0.97897	2.1433	3	0	Plateau	0.74742	0.7487	21.388	4	1	Linear	0.78118	0.86908	18.722	2	0	Median	796040000	442810000	353230000	110740000	51259000	59480000	149040000	95267000	53771000	383080000	203640000	179440000	153180000	92646000	60538000	36648	958	34582	225198;225199;225200;225201;225202;225203;225204;225205;225206;225207;225208	303499;303500;303501;303502;303503;303504;303505;303506;303507;303508;303509;303510;303511;303512	303510			13	
MKDTDSEEEIREAFR	1	Unmodified	1854.8418	0.84179138	958	P0DP25;P0DP24;P0DP23			yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.457		19	8							9	11	5	2	43.594	42.707	3;4	2.5536E-05	37114	160511_QHF_FH_JSI11i_3	100.43	90.087			1.0501	1.0539	19.333	25	1	Median	1.4333	1.2253	24.063	7	1	Median	0.86994	1.0473	15.874	11	0	Median	1.056	0.9744	14.261	5	0	Median	0.93865	1.0231	4.1939	2	0	Median	2949700000	1501900000	1447800000	584340000	225160000	359180000	1391900000	773850000	618040000	841240000	430720000	410520000	132210000	72194000	60020000	36649	958	34583	225209;225210;225211;225212;225213;225214;225215;225216;225217;225218;225219;225220;225221;225222;225223;225224;225225;225226;225227;225228;225229;225230;225231;225232;225233;225234;225235	303513;303514;303515;303516;303517;303518;303519;303520;303521;303522;303523;303524;303525;303526;303527;303528;303529;303530;303531;303532;303533;303534;303535;303536;303537	303517			21	
MKEDCFR	1	Unmodified	984.41572	0.41572158	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.601	10.695	3	0.056952	7962	160511_QHF_FH_JSI12i_3	31.074	21.86			3.243	3.2161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.243	3.2161	NaN	1	1	Median	43070000	14807000	28264000	0	0	0	0	0	0	0	0	0	43070000	14807000	28264000	36650	1806	34584	225236	303538	303538			1	
MKFALLK	2	Acetyl (K)	891.5252	0.52519568	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	75.487	66.098	2	0.0083537	35921	160513_QHF_FH_JSI11Kac_6	94.262	35.057			0.35171	0.35598	50.837	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26444	0.24849	NaN	1	0	Median	0.46777	0.50997	NaN	1	0	Median	155900000	108690000	47214000	0	0	0	0	0	0	139440000	97193000	42245000	16462000	11493000	4969400	36651	2628	34585	225237;225238	303539;303540	303539	2595		2	
MKFNPFVTSDR	1	Acetyl (K)	1382.6653	0.66527099	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	76.971	67.588	2	1.3554E-18	36921	160513_QHF_FH_JSI11Kac_6	175.65	147.44			1.4871	1.4609	206.6	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36945	0.33898	NaN	1	1	Median	5.9857	6.2963	NaN	1	1	Median	125320000	44406000	80918000	0	0	0	0	0	0	56105000	36348000	19758000	69219000	8057800	61161000	36652	1949;5450	34586	225239;225240	303541;303542	303541	1961		2	
MKGDVDVSLPK	2	Unmodified	1187.622	0.62200919	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	38.229	37.765	2;3	0.00016328	33112	160511_QHF_FH_JSI9i_2	60.161	12.17			1.3143	1.3026	25.339	6	1	Median	1.0894	0.94621	NaN	1	0	Median	0.86409	1.0729	NaN	1	0	Median	1.426	1.3891	33.598	2	1	Median	1.5205	1.5496	0.04999	2	0	Median	490740000	219400000	271330000	56574000	25001000	31573000	60765000	29735000	31030000	136610000	70147000	66459000	236790000	94521000	142270000	36653	2286	34587	225241;225242;225243;225244;225245;225246;225247	303543;303544;303545;303546;303547;303548;303549;303550;303551;303552	303545			10	
MKGDVVVSLPK	2	Unmodified	1171.6635	0.66348007	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	43.192	42.601	2;3	0.0042928	36248	160511_QHF_FH_JSI12i_3	53.967	38.077			1.3476	1.6744	23.457	5	3	Median	NaN	NaN	NaN	0	0	Median	1.2416	1.4993	15.615	2	1	Median	1.3232	1.21	NaN	1	0	Median	1.9567	2.0212	2.6047	2	2	Median	314160000	136300000	177860000	0	0	0	45601000	22156000	23445000	71541000	29146000	42395000	197020000	85003000	112020000	36654	2286	34588	225248;225249;225250;225251;225252	303553;303554;303555;303556;303557	303557			5	
MKGDYDVTVPK	2	Unmodified	1251.6169	0.61692381	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	32.191	31.335	2	0.0031123	26144	160511_QHF_FH_JSI12i_3	82.417	50.995			0.39643	0.41408	26.543	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34579	0.34322	NaN	1	1	Median	0.45449	0.49957	NaN	1	1	Median	51016000	38119000	12897000	0	0	0	0	0	0	29248000	22202000	7045500	21768000	15917000	5851400	36655	2286	34589	225253;225254;225255	303558;303559;303560	303560			3	
MKGDYFR	1	Unmodified	915.42727	0.42727255	1384;1288	P27348;P31946	YWHAQ;YWHAB	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	17.105	16.559	3	0.01112	13378	160511_QHF_FH_JSI9i_3	51.346	19.41			1.1834	1.0691	25.863	4	0	Median	1.1829	0.95489	NaN	1	0	Median	1.2321	1.4075	NaN	1	0	Median	0.83583	0.77935	NaN	1	0	Median	1.1839	1.197	NaN	1	0	Median	2248500000	1025700000	1222800000	811720000	367950000	443770000	501690000	215400000	286290000	702520000	352860000	349670000	232540000	89501000	143040000	36656	1288;1384	34590	225256;225257;225258;225259	303561;303562;303563;303564;303565	303565			5	
MKGDYYR	1	Unmodified	931.42219	0.42218717	2051;1976;2224;1385	P61981;P63104;P31947;Q04917	YWHAG;YWHAZ;SFN;YWHAH	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	9.4921	9.1477	2;3	0.014568	6839	160511_QHF_FH_JSI10i_3	47.082	36.795			0.88723	0.99822	8.1469	5	0	Median	1.2611	1.0066	NaN	1	0	Median	0.87225	1.0003	0.28792	2	0	Median	0.88723	0.834	NaN	1	0	Median	0.98727	0.99442	NaN	1	0	Median	5746200000	2721900000	3024300000	927150000	357840000	569310000	1769800000	850530000	919260000	1698100000	909290000	788850000	1351100000	604240000	746890000	36657	1976;2051;1385;2224	34591	225260;225261;225262;225263;225264	303566;303567;303568;303569;303570;303571;303572;303573	303567			8	
MKGEAEDILETEK	2	Unmodified	1491.7127	0.71267469	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	37.542	37.283	2;3	0.00044775	31667	160511_QHF_FH_JSI12i_3	74.678	60.999			0.87161	0.81712	48.597	5	5	Median	NaN	NaN	NaN	0	0	Median	1.1886	1.4374	NaN	1	1	Median	1.2756	1.1936	53.591	2	2	Median	0.62098	0.63081	21.672	2	2	Median	299130000	180600000	118540000	0	0	0	55668000	34445000	21222000	96129000	58362000	37767000	147340000	87788000	59549000	36658	4843	34592	225265;225266;225267;225268;225269;225270	303574;303575;303576;303577;303578;303579	303579			6	
MKGEVDVSLANVEGDLK	2	Unmodified	1802.9084	0.90841439	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	67.952	67.654	3	0.00050314	58583	160511_QHF_FH_JSI12i_3	65.225	51.393			1.0104	1.0242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0104	1.0242	NaN	1	1	Median	34552000	15914000	18638000	0	0	0	0	0	0	0	0	0	34552000	15914000	18638000	36659	2286	34593	225271	303580	303580			1	
MKHYEVEILDAK	2	Acetyl (Protein N-term)	1516.7596	0.7595653	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	64.457	55.168	3	0.00024811	29957	160513_QHF_FH_JSI11Kac_6	34.179	6.3168			0.71755	0.86211	155.97	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.71755	0.86211	NaN	1	0	Median	0.74356	0.72543	NaN	1	0	Median	10.601	11.737	NaN	1	1	Median	84599000	39308000	45290000	0	0	0	41684000	22599000	19085000	32539000	16104000	16435000	10375000	605050	9770100	36660	5141	34594	225272;225273;225274	303581;303582;303583	303581			3	
MKHYEVEILDAK	2	Acetyl (K)	1516.7596	0.7595653	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									4			2	2	65.053	55.387	2	0.0010791	29977	160513_QHF_FH_JSI11Kac_6	84.479	64.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8582800	5372700	3210100	0	0	0	0	0	0	8582800	5372700	3210100	0	0	0	36661	5141	34594	225275;225276;225277;225278	303584;303585;303586;303587	303584	3321		4	
MKIEEVK	2	Acetyl (K);Acetyl (Protein N-term)	959.49977	0.49976879	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			64.697	55.186	2	0.013851	22238	160513_QHF_FH_JSI10Kac_1	54.549	37.164			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36662	5496	34595	225279	303588	303588	3459		1	
MKLDYILGLK	2	Unmodified	1192.689	0.68896654	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.45		5	10						4	4	4	7	4	78.034	75.632	2;3	2.1848E-10	66450	160511_QHF_FH_JSI12i_3	150.61	131.34			0.96701	0.99946	39.135	18	4	Median	1.2273	0.97864	32.32	4	0	Median	0.84766	1.0044	8.7984	4	0	Median	0.92037	0.89765	60.698	6	4	Median	1.1158	1.117	28.324	4	0	Median	4016800000	1550000000	2466800000	437080000	179010000	258060000	537520000	252590000	284920000	1228500000	487320000	741200000	1813700000	631060000	1182700000	36663	1593	34596	225280;225281;225282;225283;225284;225285;225286;225287;225288;225289;225290;225291;225292;225293;225294;225295;225296;225297;225298	303589;303590;303591;303592;303593;303594;303595;303596;303597;303598;303599;303600;303601;303602;303603;303604;303605;303606;303607;303608;303609;303610;303611;303612;303613;303614;303615;303616;303617;303618;303619;303620;303621;303622;303623;303624;303625;303626;303627;303628;303629;303630;303631;303632;303633;303634;303635;303636;303637;303638;303639	303633			51	
MKLDYILGLK	2	Acetyl (K)	1234.6995	0.69953123	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	88.473	79.087	2	2.4449E-05	45714	160513_QHF_FH_JSI10Kac_6	119.53	96.887			0.36645	0.3669	35.027	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29904	0.2864	NaN	1	0	Median	0.44905	0.47001	NaN	1	0	Median	344100000	281730000	62372000	0	0	0	0	0	0	294070000	247930000	46141000	50033000	33802000	16231000	36664	1593	34596	225299;225300;225301	303640;303641;303642	303642	1619		3	
MKLDYILGLK	2	Acetyl (K);Oxidation (M)	1250.6944	0.69444585	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		83.729	73.203	2	0.039165	38652	160513_QHF_FH_JSI11Kac_5	36.334	24.486			0.73	0.71009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73	0.71009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2867400	1900300	967130	0	0	0	0	0	0	2867400	1900300	967130	0	0	0	36665	1593	34596	225302	303643	303643	1619		1	
MKLDYILGLK	2	Oxidation (M)	1208.6839	0.68388117	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	61.415	61.14	3	0.024882	52638	160511_QHF_FH_JSI12i_3	40.727	33.003			1.6066	1.616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6066	1.616	NaN	1	0	Median	60225000	22870000	37355000	0	0	0	0	0	0	0	0	0	60225000	22870000	37355000	36666	1593	34596	225303	303644	303644			1	
MKLPEHPEGGEPEDDEAPAK	2	Unmodified	2174.979	0.97901315	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.418	32.418	3	6.7493E-08	28188	160511_QHF_FH_JSI11i_3	90.968	81.784			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36667	5095	34597	225304	303645	303645			1	
MKPDETPMFDPSLLK	2	Unmodified	1747.8525	0.85247941	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	2	3	3	74.907	74.061	2;3	4.144E-05	64923	160511_QHF_FH_JSI11i_2	84.508	80.783			1.0046	0.98501	20.082	10	2	Median	0.95466	0.8128	10.721	2	0	Median	0.70045	0.85568	1.5397	2	0	Median	0.97656	1.0071	9.6466	3	0	Median	1.0551	1.1615	14.1	3	2	Median	1104700000	556380000	548280000	191570000	90705000	100870000	236800000	129330000	107470000	475190000	251950000	223240000	201100000	84399000	116700000	36668	4048	34598	225305;225306;225307;225308;225309;225310;225311;225312;225313;225314	303646;303647;303648;303649;303650;303651;303652;303653;303654;303655;303656;303657;303658;303659	303656			14	
MKPLMGVIYVPLTDK	2	Unmodified	1703.9354	0.93542118	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.49			8						7	3	4	5	3	87.117	83.421	2;3	1.8911E-14	41629	160513_QHF_FH_JSI11Kac_6	129.37	99.824			1.023	1.0185	21.641	12	3	Median	1.1239	0.93921	15.798	3	0	Median	0.81163	0.93573	28.851	4	2	Median	1.0761	0.9962	18.523	2	0	Median	0.99341	1.016	24.643	3	1	Plateau	1218900000	575670000	643240000	306490000	134870000	171620000	316580000	154430000	162150000	236490000	89290000	147200000	359330000	197070000	162260000	36669	1202	34599	225315;225316;225317;225318;225319;225320;225321;225322;225323;225324;225325;225326;225327;225328;225329	303660;303661;303662;303663;303664;303665;303666;303667;303668;303669;303670;303671;303672;303673;303674;303675;303676;303677;303678;303679;303680;303681;303682;303683;303684;303685	303672			26	
MKPLMGVIYVPLTDK	2	Oxidation (M)	1719.9303	0.9303358	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	79.235	78.981	3	0.001204	68526	160511_QHF_FH_JSI12i_3	73.834	66.242			0.97696	1.0111	14.757	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97696	1.0111	14.757	2	2	Median	93517000	47163000	46354000	0	0	0	0	0	0	0	0	0	93517000	47163000	46354000	36670	1202	34599	225330;225331	303686;303687	303686		824;825	2	
MKPLVVFVLGGPGAGK	2	Oxidation (M)	1584.9062	0.90616996	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		72.991	72.271	3	0.0064813	60770	160511_QHF_FH_JSI10i_3	55.885	48.294			0.57209	0.60522	39.412	2	2	Median	NaN	NaN	NaN	0	0	Median	0.68257	0.79973	NaN	1	1	Median	0.4795	0.45802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45466000	25725000	19741000	0	0	0	27169000	14535000	12633000	18297000	11189000	7107900	0	0	0	36671	1342	34600	225332;225333	303688;303689	303689		980	2	
MKPLVVFVLGGPGAGK	2	Unmodified	1568.9113	0.91125534	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.47			9						11	5	5	5	5	83.149	78.073	2;3	4.6597E-09	40624	160513_QHF_FH_JSI11Kac_6	167.6	142.8			0.5182	0.50791	29.642	14	14	Median	0.6257	0.52621	21.004	4	4	Median	0.27733	0.32735	31.384	4	4	Linear	0.51745	0.49707	9.552	3	3	Median	0.55105	0.57321	38.575	3	3	Plateau	3371300000	2055200000	1316100000	713780000	368860000	344920000	1455000000	973280000	481700000	930120000	574310000	355810000	272450000	138770000	133680000	36672	1342	34600	225334;225335;225336;225337;225338;225339;225340;225341;225342;225343;225344;225345;225346;225347;225348;225349;225350;225351;225352;225353	303690;303691;303692;303693;303694;303695;303696;303697;303698;303699;303700;303701;303702;303703;303704;303705;303706;303707;303708;303709;303710;303711	303696			22	
MKPNILVVGFK	2	Unmodified	1244.7315	0.73150006	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		10.8	6.37			2						3	2	1	2		69.27	63.867	3	0.0019954	52455	160511_QHF_FH_JSI9i_3	54.259	49.743			1.0328	0.94007	23.251	5	1	Median	1.2339	1.0238	30.564	2	0	Median	0.77124	0.91138	NaN	1	0	Median	1.2011	1.1536	28.948	2	1	Median	NaN	NaN	NaN	0	0	Median	219080000	101520000	117560000	87869000	36758000	51111000	28637000	17407000	11230000	102570000	47356000	55216000	0	0	0	36673	1841	34601	225354;225355;225356;225357;225358	303712;303713;303714	303713			2	
MKPNILVVGFKK	3	Unmodified	1372.8265	0.82646308	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	2			By MS/MS		16	0									1			1		63.718	54.033	3	0.0033353	29290	160513_QHF_FH_JSI11Kac_6	69.451	49.024			0.86599	0.83705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86599	0.83705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16775000	7037400	9737500	0	0	0	0	0	0	16775000	7037400	9737500	0	0	0	36674	1841	34602	225359	303715	303715			1	
MKPQGKPSSLMNPSLSK	3	Acetyl (K)	1870.9645	0.96448948	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	57.288	47.966	3	5.4297E-05	26312	160513_QHF_FH_JSI10Kac_6	98.062	86.542			0.9833	0.98219	6.4383	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81144	0.97087	NaN	1	0	Median	1.087	1.0774	NaN	1	0	Median	0.9833	1.0921	NaN	1	0	Median	60757000	30979000	29778000	6780000	0	6780000	27995000	14714000	13281000	15892000	10415000	5477300	10090000	5850100	4239500	36675	2694	34603	225360;225361;225362;225363	303716;303717;303718;303719;303720	303719	2635;2636		5	
MKPQGKPSSLMNPSLSK	3	Acetyl (K);Oxidation (M)	1886.9594	0.9594041	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	1	2				By MS/MS	16	0									1				1	47.388	37.744	3	0.017655	19742	160513_QHF_FH_JSI12Kac_6	52.887	34.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1965300	0	1965300	0	0	0	0	0	0	0	0	0	1965300	0	1965300	36676	2694	34603	225364	303721	303721	2635;2636	2104	1	
MKPSDLSQVWPEANQHFSK	2	Unmodified	2228.0684	0.068437276	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	3	3	2	65.947	65.22	3;4	1.1473E-05	57854	160511_QHF_FH_JSI11i_3	83.423	69.262			1.0622	0.98174	90.171	8	5	Median	1.1209	0.90762	NaN	1	0	Median	0.9143	1.0534	148.91	3	2	Median	1.2743	1.2059	17.265	3	2	Median	0.87682	0.89158	NaN	1	1	Median	433220000	168990000	264230000	25494000	9291600	16203000	196680000	49788000	146890000	163180000	88866000	74315000	47862000	21040000	26822000	36677	21	34604	225365;225366;225367;225368;225369;225370;225371;225372;225373	303722;303723;303724;303725;303726;303727;303728;303729;303730;303731;303732	303723			11	
MKPSIAEMLHRGR	1	Acetyl (Protein N-term);Oxidation (M)	1582.8072	0.80720097	630	O94933	SLITRK3	SLIT and NTRK-like protein 3	yes	yes	0	1	1	2		By MS/MS	By MS/MS		8.5	6.5		1						1			1	1		79.237	73.588	2	0.0051052	68232	160511_QHF_FH_JSI10i_2	43.512	26.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36678	630	34605	225374;225375	303733;303734	303734		230	2	
MKPVHER	1	Acetyl (K);Acetyl (Protein N-term)	979.49094	0.49093544	946	P0C7T5	ATXN1L	Ataxin-1-like	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.696						1	3	4		1	3	2	2	28.277	19.459	2	0.010569	12693	160513_QHF_FH_JSI11Kac_4	62.546	44.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36679	946	34606	225376;225377;225378;225379;225380;225381;225382;225383	303735;303736;303737;303738;303739;303740;303741;303742	303737	713		8	
MKPVHER	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	995.48585	0.48585006	946	P0C7T5	ATXN1L	Ataxin-1-like	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	17.196	9.2914	2	0.0019556	7049	160513_QHF_FH_JSI12Kac_4	86.794	65.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36680	946	34606	225384;225385;225386;225387;225388;225389	303743;303744;303745;303746;303747;303748	303747	713	522	6	
MKPWFEVGDENSGWSAQK	2	Unmodified	2094.9469	0.94692516	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							1	3			73.046	71.588	3	4.8525E-08	59478	160511_QHF_FH_JSI10i_3	99.891	90.607			0.80118	0.78189	2.8673	2	2	Median	0.93847	0.7979	NaN	1	1	Median	0.68397	0.76619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31476000	16145000	15331000	9906200	3972400	5933900	21570000	12172000	9397300	0	0	0	0	0	0	36681	446	34607	225390;225391;225392;225393	303749;303750;303751;303752	303751			4	
MKQDAQVVLYR	1	Unmodified	1349.7126	0.71255553	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	30.883	30.818	2;3	0.01494	26022	160511_QHF_FH_JSI12i_3	67.385	50.359			1.5588	1.578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5588	1.578	NaN	1	0	Median	64141000	17326000	46815000	0	0	0	0	0	0	0	0	0	64141000	17326000	46815000	36682	2094	34608	225394;225395	303753;303754	303754			1	
MKQEGSAR	1	Acetyl (K);Acetyl (Protein N-term)	989.46003	0.46002924	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	1	1	0	1			By MS/MS	By MS/MS	11	0				2								1	1	21.681	14.293	2	0.010352	6753	160513_QHF_FH_JSI11Kac_1	52.716	39.679			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36683	313	34609	225396;225397	303755;303756	303756	164		2	
MKQEPVKPEEGR	2	Unmodified	1426.7238	0.7238485	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							1	3	3		8.9791	8.6659	2;3;4	9.0752E-05	6372	160511_QHF_FH_JSI10i_3	89.231	78.682			0.79147	0.91355	24.602	7	0	Median	1.6088	1.3841	NaN	1	0	Median	0.75708	0.93277	7.0596	3	0	Median	0.87574	0.83091	18.749	3	0	Plateau	NaN	NaN	NaN	0	0	Median	687180000	393480000	293700000	49116000	20417000	28700000	222300000	130970000	91326000	415770000	242090000	173670000	0	0	0	36684	1957	34610	225398;225399;225400;225401;225402;225403;225404	303757;303758;303759;303760;303761;303762	303759			6	
MKSFCQR	1	Acetyl (K)	997.44736	0.44735606	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	1	0	0	1			By MS/MS		16	0									1			1		28.551	19.389	2	0.016287	11415	160513_QHF_FH_JSI11Kac_6	81.784	74.113		+	0.2465	0.23403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2465	0.23403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17403000	15044000	2359000	0	0	0	0	0	0	17403000	15044000	2359000	0	0	0	36685	856;75	34611	225405	303763	303763	53		1	
MKVELCSFSGYK	2	Unmodified	1447.684	0.68395752	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	55.24	55.078	2;3	0.0043999	47311	160511_QHF_FH_JSI12i_3	92.866	77.237			0.70302	0.71039	54.422	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48621	0.4613	NaN	1	1	Median	0.9805	0.98291	45.919	2	1	Median	195800000	103110000	92683000	0	0	0	0	0	0	37172000	24042000	13129000	158620000	79071000	79554000	36686	2120	34612	225406;225407;225408	303764;303765;303766;303767	303767			4	
MKYDESDNAFIR	1	Unmodified	1487.6715	0.67147858	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.29	0.452		5	2								2	1	4	40.457	39.697	2;3	9.7981E-06	33763	160511_QHF_FH_JSI12i_3	85.536	78.496			1.008	1.1241	15.06	6	0	Median	NaN	NaN	NaN	0	0	Median	0.96032	1.183	NaN	1	0	Median	1.058	1.0682	NaN	1	0	Median	1.3801	1.3727	18.777	4	0	Linear	355120000	170830000	184290000	0	0	0	89300000	45565000	43735000	74956000	36021000	38935000	190870000	89246000	101620000	36687	346	34613	225409;225410;225411;225412;225413;225414;225415	303768;303769;303770	303770			3	
MLAAQGVDPGLAR	0	Unmodified	1297.6813	0.6812554	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	48.584	47.807	2	2.9659E-05	40853	160511_QHF_FH_JSI12i_2	118.4	98.626			1.1415	1.1446	27.598	7	6	Median	1.3089	1.108	NaN	1	1	Median	0.88775	1.0571	28.846	2	2	Median	1.4466	1.4001	28.487	2	2	Median	1.3452	1.4509	39.05	2	1	Median	419660000	188080000	231590000	52490000	21344000	31146000	119390000	62390000	57004000	122730000	48961000	73769000	125050000	55382000	69668000	36688	1167	34614	225416;225417;225418;225419;225420;225421;225422	303771;303772;303773;303774;303775;303776;303777;303778	303773			8	
MLAAYLYEVSQLK	1	Unmodified	1527.8007	0.80070184	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		95.168	95.168	2	0.00035777	84815	160511_QHF_FH_JSI11i_3	70.977	54.753			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36689	4160	34615	225423	303779	303779			1	
MLAAYLYEVSQLKD	1	Unmodified	1642.8276	0.82764487	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.92	4.73		1	10						2		3	5	5	93.405	91.803	2;3	3.1039E-07	81513	160511_QHF_FH_JSI12i_3	178.81	153.38			1.502	1.5708	133.31	13	13	Median	NaN	NaN	NaN	0	0	Median	1.9882	2.415	162.75	3	3	Median	0.65095	0.6379	125.71	5	5	Median	1.502	1.5708	153.23	5	5	Median	387690000	193840000	193860000	0	0	0	36103000	14669000	21434000	160490000	86830000	73664000	191100000	92339000	98758000	36690	4160	34616	225424;225425;225426;225427;225428;225429;225430;225431;225432;225433;225434;225435;225436	303780;303781;303782;303783;303784;303785;303786;303787;303788;303789;303790;303791;303792;303793;303794;303795;303796	303791			17	
MLADDAEAGAEDEK	1	Unmodified	1463.6086	0.60860355	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	6									2	1	1	2	26.773	26.086	2	1.6773E-15	23114	160511_QHF_FH_JSI11i_1	168.02	148.74			1.0901	1.1381	49.165	6	4	Median	1.159	0.95286	83.026	2	2	Median	0.91211	1.0871	NaN	1	0	Median	1.2817	1.1916	NaN	1	0	Median	1.4095	1.4592	57.596	2	2	Median	372250000	160280000	211970000	105520000	46478000	59044000	76849000	41684000	35165000	69138000	21332000	47806000	120740000	50788000	69957000	36691	5466	34617	225437;225438;225439;225440;225441;225442	303797;303798;303799;303800;303801;303802	303798			6	
MLAEDELR	0	Unmodified	975.46953	0.46953129	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	33.476	32.955	2	0.00091687	29450	160511_QHF_FH_JSI10i_1	96.492	44.704			0.926	0.89366	19.014	5	0	Median	1.0521	0.89366	NaN	1	0	Median	0.70549	0.83891	NaN	1	0	Median	0.78219	0.78012	27.052	2	0	Median	1.0243	1.0772	NaN	1	0	Median	1078700000	579350000	499400000	166530000	94945000	71588000	218940000	115030000	103900000	535190000	280380000	254810000	158090000	88986000	69100000	36692	1944;2125	34618	225443;225444;225445;225446;225447;225448;225449	303803;303804;303805;303806;303807;303808;303809;303810;303811;303812;303813	303808			11	
MLAEDELRDAVLLVFANK	1	Oxidation (M)	2062.0769	0.076876698	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	7	6.38		2	2						2		1	2	3	99.623	97.047	3	5.0272E-07	88520	160511_QHF_FH_JSI12i_3	119.23	99.414			0.98345	1.0165	11.779	6	1	Median	NaN	NaN	NaN	0	0	Median	0.87786	1.0312	NaN	1	1	Median	1.0801	1.0442	8.3888	2	0	Median	0.97127	1.0021	17.333	3	0	Median	1489200000	778440000	710800000	0	0	0	242190000	113070000	129120000	258390000	148570000	109820000	988660000	516800000	471860000	36693	1944;2125	34619	225450;225451;225452;225453;225454;225455	303814;303815;303816;303817;303818	303816		1613	4	
MLAEDELRDAVLLVFANK	1	Unmodified	2046.082	0.081962076	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.52		12	8						11	7	7	8	9	100.46	97.453	2;3;4	4.3691E-116	88990	160511_QHF_FH_JSI12i_3	299.64	271.01			1.0089	0.98656	13.384	31	3	Median	1.125	0.95717	12.644	7	0	Median	0.79759	0.97485	9.6408	7	0	Median	1.0246	1.0274	17.885	8	1	Median	0.99349	1.0365	12.237	9	2	Median	20879000000	10234000000	10644000000	3894200000	1751600000	2142600000	4132200000	2275500000	1856700000	5493100000	2564900000	2928200000	7359100000	3642100000	3717000000	36694	1944;2125	34619	225456;225457;225458;225459;225460;225461;225462;225463;225464;225465;225466;225467;225468;225469;225470;225471;225472;225473;225474;225475;225476;225477;225478;225479;225480;225481;225482;225483;225484;225485;225486	303819;303820;303821;303822;303823;303824;303825;303826;303827;303828;303829;303830;303831;303832;303833;303834;303835;303836;303837;303838;303839;303840;303841;303842;303843;303844;303845;303846;303847;303848;303849;303850;303851;303852;303853;303854;303855;303856;303857;303858;303859;303860;303861;303862;303863	303854			45	
MLAHTPQQK	1	Unmodified	1052.5437	0.54369929	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	8.4417	8.5068	2;3	0.0001064	5936	160511_QHF_FH_JSI12i_3	96.492	59.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36695	21	34620	225487;225488;225489	303864;303865;303866	303866			3	
MLAITANTLR	0	Unmodified	1102.6169	0.61686423	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	54.818	54.092	2	0.022309	47891	160511_QHF_FH_JSI10i_2	41.427	15.868			1.0159	1.0269	5.5045	3	1	Median	1.2564	1.0921	NaN	1	0	Median	0.8	0.97847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0159	1.0269	NaN	1	1	Median	165360000	72840000	92524000	41835000	16349000	25486000	38909000	20163000	18745000	0	0	0	84621000	36328000	48293000	36696	409	34621	225490;225491;225492	303867;303868;303869	303868			3	
MLAIYDGFDGFAK	1	Unmodified	1446.6853	0.68533773	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.5	1	6	1							2	2	3	1	90.098	89.496	2	8.1878E-12	77324	160511_QHF_FH_JSI12i_2	155.15	105.73			0.97779	0.95292	37.34	8	7	Median	1.4893	1.2556	28.67	2	2	Median	0.91051	1.1122	40.685	2	2	Median	0.67965	0.66364	49.261	3	3	Median	0.79641	0.88572	NaN	1	0	Median	1280100000	685830000	594290000	164380000	82481000	81900000	384640000	214640000	170000000	519080000	267970000	251110000	212020000	120730000	91291000	36697	2176	34622	225493;225494;225495;225496;225497;225498;225499;225500	303870;303871;303872;303873;303874;303875;303876;303877;303878;303879;303880;303881;303882;303883;303884	303873			15	
MLALALLDR	0	Unmodified	1014.5896	0.58958685	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.36		1	6						1	1	3	2	2	83.946	82.812	2	0.0017027	70146	160511_QHF_FH_JSI10i_3	67.897	33.089			1.0095	0.99439	45.968	8	6	Median	1.295	1.049	NaN	1	0	Median	0.80392	0.9211	32.163	3	2	Plateau	1.0803	1.0178	94.386	2	2	Median	1.0375	1.0671	60.772	2	2	Median	342880000	163760000	179120000	44397000	17325000	27072000	93574000	53019000	40555000	104590000	47097000	57493000	100320000	46321000	54000000	36698	3862	34623	225501;225502;225503;225504;225505;225506;225507;225508	303885;303886;303887;303888;303889;303890;303891;303892	303888			8	
MLALGNQVGK	1	Unmodified	1029.5641	0.56410038	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.196	39.737	2	0.0035519	34040	160511_QHF_FH_JSI11i_2	69.198	44.976			2.2029	2.2657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2029	2.2657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76176000	29502000	46675000	0	0	0	0	0	0	76176000	29502000	46675000	0	0	0	36699	540	34624	225509	303893	303893			1	
MLALISR	0	Acetyl (Protein N-term)	844.48406	0.48405915	5036	Q9NVJ2	ARL8B	ADP-ribosylation factor-like protein 8B	yes	yes	0	1	0	0			By MS/MS		8.5	6.5		1						1				2		94.077	93.681	2	0.016123	82225	160511_QHF_FH_JSI11i_2	46.426	24.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36700	5036	34625	225510;225511	303894;303895	303894			2	
MLANFESGK	1	Unmodified	995.47462	0.47461667	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	33.133	32.209	2	1.9956E-06	27243	160511_QHF_FH_JSI11i_2	128.69	109.05			0.92809	0.93717	41.849	3	1	Median	1.4379	1.2687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92809	0.93717	NaN	1	0	Median	0.49433	0.5548	NaN	1	1	Median	366690000	185610000	181080000	102010000	43468000	58539000	0	0	0	168990000	85236000	83750000	95697000	56904000	38793000	36701	4449	34626	225512;225513;225514	303896;303897;303898;303899;303900;303901	303899			6	
MLAPEGALNIHEK	1	Unmodified	1421.7337	0.7336849	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	48.574	47.615	2;3	0.0001164	40872	160511_QHF_FH_JSI12i_2	89.26	75.58			1.0813	1.1356	15.598	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2844	1.268	NaN	1	1	Median	0.91027	1.017	NaN	1	1	Median	303850000	139110000	164740000	0	0	0	0	0	0	26493000	12690000	13804000	277360000	126420000	150940000	36702	2145	34627	225515;225516;225517;225518	303902;303903;303904;303905	303902			4	
MLAQQAVK	1	Unmodified	887.48987	0.48987281	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	2	2		16.664	16.155	2	0.0025888	12910	160511_QHF_FH_JSI11i_2	86.866	70.712			1.1804	1.0927	89.751	4	4	Median	0.71277	0.60458	NaN	1	1	Median	2.4224	2.9953	NaN	1	1	Median	0.95524	0.96503	101.27	2	2	Median	NaN	NaN	NaN	0	0	Median	620190000	347760000	272430000	164110000	98872000	65235000	66785000	26766000	40019000	389300000	222120000	167180000	0	0	0	36703	817	34628	225519;225520;225521;225522;225523	303906;303907;303908;303909;303910	303907			5	
MLASASEDHFIDIAEVETGDK	1	Unmodified	2277.0471	0.047092712	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	77.396	76.763	3	1.5925E-05	67332	160511_QHF_FH_JSI11i_2	73.405	64.359			0.7342	0.74955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7342	0.74955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62565000	36542000	26022000	0	0	0	0	0	0	62565000	36542000	26022000	0	0	0	36704	4132	34629	225524;225525	303911;303912;303913	303913			3	
MLASKRADGAAPAGEGEGVTLQR	1	Oxidation (M)	2300.1543	0.15429217	3490	Q8MH63	SLC7A5P1	Putative L-type amino acid transporter 1-like protein MLAS	yes	yes	0	0	1	2	By MS/MS				2	0		1								1				47.646	46.591	3	0.0082853	40784	160511_QHF_FH_JSI9i_2	34.405	20.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36705	3490	34630	225526	303914	303914		2261	1	
MLATLEPEQR	0	Unmodified	1186.6016	0.6016081	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	39.794	38.977	2	8.0695E-19	33170	160511_QHF_FH_JSI12i_2	172.21	160.37			1.0871	0.99745	69.785	7	4	Median	1.1594	0.98787	NaN	1	0	Median	0.71221	0.87046	93.304	2	2	Median	1.6297	1.6346	69.854	2	1	Median	0.61945	0.65983	83.6	2	1	Median	1103500000	554930000	548530000	172340000	79406000	92935000	274290000	151550000	122750000	411960000	193460000	218500000	244870000	130520000	114350000	36706	1837	34631	225527;225528;225529;225530;225531;225532;225533;225534	303915;303916;303917;303918;303919;303920;303921;303922;303923;303924;303925	303916			11	
MLATLFK	1	Unmodified	822.46735	0.46734645	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	58.738	57.826	2	0.0084674	50222	160511_QHF_FH_JSI11i_2	86.086	43.086			0.82969	0.82743	154.11	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0276	1.253	NaN	1	1	Median	0.22544	0.22282	185.54	2	2	Median	0.50919	0.57705	197.49	2	2	Median	734570000	461480000	273090000	0	0	0	126140000	71421000	54724000	367640000	253430000	114220000	240780000	136630000	104150000	36707	4411	34632	225535;225536;225537;225538;225539	303926;303927;303928;303929;303930	303929			5	
MLDAAVIK	1	Unmodified	859.48372	0.48372479	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	42.115	41.322	2	0.014526	36135	160511_QHF_FH_JSI9i_2	60.682	6.4769			0.48084	0.47588	64.698	4	4	Linear	0.9684	0.82131	NaN	1	1	Median	1.4544	1.7392	NaN	1	1	Median	0.37816	0.37236	NaN	1	1	Median	0.54646	0.60011	NaN	1	1	Median	586590000	385890000	200700000	163830000	105610000	58215000	82283000	33904000	48379000	94462000	62934000	31528000	246020000	183440000	62579000	36708	4521	34633	225540;225541;225542;225543	303931;303932;303933;303934	303934			4	
MLDAEDIVGTARPDEK	1	Unmodified	1758.8458	0.84581413	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	58.862	58.075	3	1.6132E-05	50281	160511_QHF_FH_JSI11i_2	97.579	93.11			0.78086	0.90757	40.614	8	1	Median	0.57652	0.48594	28.015	2	0	Median	0.69338	0.81236	19.699	2	1	Median	1.2137	1.2023	14.296	2	0	Median	0.97761	1.0487	24.465	2	0	Median	1269300000	656520000	612800000	212790000	135560000	77233000	236480000	143480000	92998000	468340000	202470000	265870000	351710000	175010000	176700000	36709	1021	34634	225544;225545;225546;225547;225548;225549;225550;225551	303935;303936;303937;303938;303939;303940;303941;303942;303943	303941			8	
MLDAEDIVNTARPDEK	1	Unmodified	1815.8673	0.86727785	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							2	3	4	3	61.19	60.381	2;3	1.9946E-09	51709	160511_QHF_FH_JSI12i_2	159.64	134.2			0.98492	1.0509	56.673	10	0	Median	0.52151	0.42714	11.696	2	0	Median	0.58663	0.69836	6.0028	2	0	Median	1.762	1.802	4.2263	3	0	Median	0.91321	0.98291	20.55	3	0	Plateau	3400200000	1680600000	1719500000	535950000	333300000	202650000	798880000	506570000	292300000	1353600000	484040000	869590000	711700000	356700000	355000000	36710	361	34635	225552;225553;225554;225555;225556;225557;225558;225559;225560;225561;225562;225563	303944;303945;303946;303947;303948;303949;303950;303951;303952;303953;303954;303955;303956;303957;303958;303959;303960;303961;303962;303963;303964;303965;303966;303967;303968;303969;303970;303971;303972	303954			29	
MLDDNNHLIQCIMDSQNK	1	Unmodified	2187.9711	0.97110777	2680	Q15532	SS18	Protein SSXT	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	74.571	74.426	3	0.0012702	66395	160511_QHF_FH_JSI11i_3	51.487	39.699			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36711	2680	34636	225564;225565	303973;303974	303973			2	
MLDDRGNTAAYLLYAFTR	0	Unmodified	2090.0255	0.025509829	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.71		3	2						7	3	4	3	2	94.569	89.786	2;3	5.3896E-96	47360	160513_QHF_FH_JSI10Kac_6	243.99	200.09			0.9694	1.0374	24.505	12	5	Median	1.2553	1.0638	9.4196	3	2	Plateau	0.9261	1.1082	14.705	4	1	Median	1.2336	1.1819	24.582	3	2	Median	0.66437	0.70458	37.272	2	0	Median	3592900000	1795000000	1798000000	970200000	427870000	542330000	1347100000	712160000	634950000	704210000	344000000	360220000	571390000	310920000	260470000	36712	1818	34637	225566;225567;225568;225569;225570;225571;225572;225573;225574;225575;225576;225577	303975;303976;303977;303978;303979;303980;303981;303982;303983;303984;303985;303986;303987;303988;303989	303988			13	
MLDDRGNTAAYLLYAFTR	0	Oxidation (M)	2106.0204	0.020424451	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			87.838	80.66	3	1.7382E-05	44101	160513_QHF_FH_JSI9Kac_6	88.56	78.772			1.0086	1.0082	16.117	2	0	Median	1.3353	1.1299	NaN	1	0	Median	0.76177	0.89964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277150000	136920000	140230000	142530000	55808000	86724000	134620000	81111000	53506000	0	0	0	0	0	0	36713	1818	34637	225578;225579	303990;303991;303992	303990		1504	3	
MLDFFTIFSK	1	Unmodified	1247.626	0.62603194	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		5	5						4	2	5	4	3	100.89	98.766	2	3.1457E-33	90758	160511_QHF_FH_JSI10i_2	183.47	140.23			0.94074	0.98069	21.112	12	4	Median	1.2639	1.0499	9.7419	2	0	Median	0.83586	0.98715	37.689	4	3	Median	1.0399	0.99486	6.3382	3	1	Median	0.81386	0.89778	3.387	3	0	Plateau	2390100000	1189800000	1200300000	255630000	113140000	142490000	616090000	329310000	286780000	828870000	400010000	428860000	689550000	347340000	342210000	36714	899	34638	225580;225581;225582;225583;225584;225585;225586;225587;225588;225589;225590;225591;225592;225593	303993;303994;303995;303996;303997;303998;303999;304000;304001;304002;304003;304004;304005;304006;304007;304008;304009;304010;304011	304007			19	
MLDFFTIFSK	1	Oxidation (M)	1263.6209	0.62094656	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	94.287	84.875	2	0.0077541	46062	160513_QHF_FH_JSI12Kac_6	72.243	58.652			0.41115	0.41017	53.049	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29395	0.28187	NaN	1	1	Median	0.57506	0.59685	NaN	1	1	Median	229460000	162350000	67106000	0	0	0	0	0	0	112410000	96101000	16313000	117050000	66253000	50793000	36715	899	34638	225594;225595	304012;304013	304013		476	2	
MLDHEYTTK	1	Unmodified	1136.5172	0.51720977	998	P11387;Q969P6	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	3	2	14.337	13.806	2;3	0.00010945	10995	160511_QHF_FH_JSI12i_2	110.87	83.91			1.927	2.0669	140.14	6	6	Median	NaN	NaN	NaN	0	0	Median	0.084363	0.10267	NaN	1	1	Median	2.1891	2.1986	127.79	3	3	Median	1.9436	2.2063	17.961	2	2	Median	547790000	237280000	310510000	18420000	0	18420000	36007000	30222000	5784700	352700000	149520000	203180000	140660000	57542000	83117000	36716	998	34639	225596;225597;225598;225599;225600;225601;225602	304014;304015;304016;304017;304018;304019;304020;304021;304022	304014			9	
MLDMGFEPQIR	0	Unmodified	1335.6315	0.63152802	154;1128;3893	P17844;Q92841;O00571;O15523	DDX5;DDX17;DDX3X;DDX3Y	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17;ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.84	0.744	7	8	4							3	6	5	5	72.589	71.867	2;3	1.1407E-23	63081	160511_QHF_FH_JSI11i_2	180.8	145.99			0.92835	0.98723	19.68	17	4	Median	1.0605	0.88027	11.686	3	0	Median	0.85276	1.0311	24.443	5	2	Median	0.97408	0.98108	18.869	4	0	Median	0.8438	0.94215	7.1276	5	2	Median	6211500000	3214100000	2997400000	1175000000	601470000	573530000	1574100000	829230000	744850000	2079200000	914610000	1164600000	1383200000	868750000	514440000	36717	1128;3893;154	34640	225603;225604;225605;225606;225607;225608;225609;225610;225611;225612;225613;225614;225615;225616;225617;225618;225619;225620;225621	304023;304024;304025;304026;304027;304028;304029;304030;304031;304032;304033;304034;304035;304036;304037;304038;304039;304040;304041;304042;304043	304036			21	
MLDMGFEPQIR	0	Oxidation (M)	1351.6264	0.62644264	154;1128;3893	P17844;Q92841;O00571;O15523	DDX5;DDX17;DDX3X;DDX3Y	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17;ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	no	no	0	0	1	0			By MS/MS		2	0		1										1		65.943	65.382	2	0.039707	56994	160511_QHF_FH_JSI11i_2	40.589	31.844			0.89588	0.95423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89588	0.95423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38726000	20882000	17845000	0	0	0	0	0	0	38726000	20882000	17845000	0	0	0	36718	1128;3893;154	34640	225622	304044	304044		750	1	
MLDMGFEPQIRK	1	Unmodified	1463.7265	0.72649104	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							3	2	5	2	60.392	59.762	2;3	3.448E-23	52967	160511_QHF_FH_JSI10i_2	142.1	134.69			0.97054	0.94063	48.767	11	5	Median	0.8774	0.73359	17.282	2	1	Median	0.73899	0.87489	10.246	2	0	Median	1.3207	1.2535	52.918	5	4	Median	1.6539	1.6738	58.769	2	0	Median	4690100000	2258100000	2432000000	328850000	175890000	152960000	613030000	260940000	352090000	2042400000	916990000	1125400000	1705800000	904270000	801530000	36719	1128;3893	34641	225623;225624;225625;225626;225627;225628;225629;225630;225631;225632;225633;225634	304045;304046;304047;304048;304049;304050;304051;304052;304053;304054;304055;304056;304057;304058;304059;304060	304057			16	
MLDMGFEPQIRK	1	Oxidation (M)	1479.7214	0.72140566	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	1	1				By MS/MS	3	0			1										1	45.568	45.327	3	0.013696	38723	160511_QHF_FH_JSI12i_3	37.744	32.566			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36720	1128;3893	34641	225635	304061	304061		750	1	
MLDNDSILVDAIRK	1	Unmodified	1601.8447	0.84469192	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	71.5	70.86	3	0.00010979	61454	160511_QHF_FH_JSI12i_3	93.478	85.754			0.46566	0.51597	27.982	6	4	Median	0.5952	0.52863	NaN	1	0	Median	0.43305	0.52687	NaN	1	0	Median	0.5023	0.48162	45.45	2	2	Median	0.38102	0.40105	32.672	2	2	Median	316110000	196570000	119540000	36113000	23695000	12417000	65643000	46531000	19112000	112170000	68082000	44085000	102190000	58258000	43930000	36721	488	34642	225636;225637;225638;225639;225640;225641	304062;304063;304064;304065;304066;304067	304067			6	
MLDTDGNEMIEK	1	Unmodified	1394.6058	0.60576678	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.958	41.472	2	0.00033513	37417	160511_QHF_FH_JSI11i_1	90.05	62.037			0.125	0.12515	147.52	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37234	0.35519	NaN	1	1	Median	0.041966	0.044095	NaN	1	1	Median	77300000	64006000	13294000	0	0	0	0	0	0	47129000	34809000	12321000	30171000	29198000	973140	36722	3473	34643	225642;225643	304068;304069	304068			2	
MLEDPQER	0	Unmodified	1016.4597	0.45969489	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				17.119	16.057	2	0.0038321	13310	160511_QHF_FH_JSI9i_1	70.525	49.866			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36723	4449	34644	225644	304070	304070			1	
MLEDRDLFVMR	0	Unmodified	1423.6952	0.69519091	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	63.173	62.523	2;3	3.3457E-13	55306	160511_QHF_FH_JSI11i_3	141.95	121.75			0.90567	0.94346	17.826	12	4	Median	1.1669	1.0072	16.913	2	2	Median	0.80725	0.98628	6.5043	2	0	Median	0.90616	0.8709	22.918	4	2	Median	0.84127	0.94371	18.918	4	0	Median	3020100000	1606100000	1414000000	374190000	181410000	192780000	528910000	289420000	239490000	1264600000	647720000	616840000	852430000	487500000	364930000	36724	2502	34645	225645;225646;225647;225648;225649;225650;225651;225652;225653;225654;225655;225656	304071;304072;304073;304074;304075;304076;304077;304078;304079;304080;304081;304082;304083;304084;304085;304086;304087;304088	304072			18	
MLEENTNILK	1	Unmodified	1203.6169	0.61692381	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	46.192	45.516	2	2.3272E-05	38821	160511_QHF_FH_JSI12i_2	107.57	75.22			0.52294	0.57606	22.595	5	4	Median	NaN	NaN	NaN	0	0	Median	0.66176	0.77137	NaN	1	0	Median	0.4549	0.45445	4.2167	2	2	Median	0.56062	0.6002	5.806	2	2	Median	626740000	379380000	247360000	0	0	0	161680000	99758000	61923000	239980000	151020000	88961000	225080000	128610000	96476000	36725	5130	34646	225657;225658;225659;225660;225661;225662	304089;304090;304091;304092;304093;304094	304090			6	
MLEGGEDPLYVAR	0	Unmodified	1448.697	0.69696505	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				58.441	57.304	2	0.015417	50882	160511_QHF_FH_JSI9i_1	52.167	24.086			0.78446	0.62762	NaN	1	1	Median	0.78446	0.62762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24840000	11827000	13014000	24840000	11827000	13014000	0	0	0	0	0	0	0	0	0	36726	4235	34647	225663	304095	304095			1	
MLEHLSSLPTQMDYK	1	Unmodified	1791.8535	0.85354204	5715	Q9Y6A9	SPCS1	Signal peptidase complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.15	3.72		11	1						1	4	3	4	2	61.953	61.152	2;3	4.1892E-13	53080	160511_QHF_FH_JSI11i_2	201.02	169.38			1.1184	1.237	72.733	11	11	Median	1.7558	1.4742	46.524	3	3	Plateau	1.5909	1.966	76.728	3	3	Median	3.8925	3.9834	111.13	3	3	Plateau	0.71895	0.80541	60.686	2	2	Median	1226300000	499540000	726730000	282080000	123730000	158350000	314830000	130600000	184230000	559450000	203360000	356090000	69917000	41852000	28064000	36727	5715	34648	225664;225665;225666;225667;225668;225669;225670;225671;225672;225673;225674;225675;225676	304096;304097;304098;304099;304100;304101;304102;304103;304104;304105;304106;304107;304108;304109	304104			14	
MLEIDPQK	1	Unmodified	972.49502	0.49501776	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			1	2	2	3	39.292	37.455	2	0.0014792	33058	160511_QHF_FH_JSI9i_1	88.942	77.037			1.0857	1.1349	45.518	8	4	Median	1.4519	1.2021	NaN	1	0	Median	1.0857	1.3155	29.013	2	0	Median	1.2827	1.2817	58.171	2	1	Median	0.66332	0.71931	68.106	3	3	Median	3209200000	1485000000	1724200000	497050000	202450000	294600000	847480000	397910000	449560000	818190000	370860000	447330000	1046500000	513790000	532740000	36728	1249	34649	225677;225678;225679;225680;225681;225682;225683;225684	304110;304111;304112;304113;304114;304115;304116;304117;304118;304119;304120	304116			11	
MLEILEGK	1	Unmodified	931.50485	0.50485417	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	57.631	56.286	2	0.013549	49373	160511_QHF_FH_JSI9i_2	51.346	23.172			0.10267	0.11292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10267	0.11292	NaN	1	1	Median	33523000	29722000	3801100	0	0	0	0	0	0	0	0	0	33523000	29722000	3801100	36729	2084	34650	225685;225686	304121;304122	304122			2	
MLEILEQQK	1	Unmodified	1130.6005	0.60054547	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		53.926	53.206	2	0.00040066	46842	160511_QHF_FH_JSI9i_2	91.069	55.713			2.5857	2.3161	206.64	2	2	Median	0.64131	0.53725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10.425	9.9844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105150000	49397000	55752000	74207000	44726000	29481000	0	0	0	30942000	4670800	26271000	0	0	0	36730	989	34651	225687;225688;225689	304123;304124;304125	304125			3	
MLENIIDLFNQAAGDAISDMLVIEAILALK	1	Unmodified	3243.7135	0.71347332	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			107.24	101.52	3;4	1.0723E-20	60167	160513_QHF_FH_JSI10Kac_6	107.45	97.391			0.95212	1.1322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95212	1.1322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241070000	164260000	76811000	0	0	0	241070000	164260000	76811000	0	0	0	0	0	0	36731	690	34652	225690;225691	304126;304127;304128	304127			3	
MLENTDNSSPSTEHSQGLEK	1	Unmodified	2202.9699	0.96990502	4104	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								3	4	4	3	24.107	23.475	3	2.3447E-18	20446	160511_QHF_FH_JSI11i_1	178.75	146.57			0.84789	0.90943	75.467	14	14	Median	5.1676	4.3921	117.59	3	3	Plateau	0.65468	0.76632	74.111	4	4	Median	1.0696	1.0363	44.769	4	4	Median	0.63541	0.681	68.897	3	3	Median	552650000	286850000	265800000	71713000	22555000	49159000	144660000	73663000	70998000	144250000	83021000	61229000	192030000	107620000	84412000	36732	4104	34653	225692;225693;225694;225695;225696;225697;225698;225699;225700;225701;225702;225703;225704;225705	304129;304130;304131;304132;304133;304134;304135;304136;304137;304138;304139;304140;304141;304142;304143;304144	304129			16	
MLEQLDMR	0	Unmodified	1034.4889	0.48888653	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.662	2	7	4							3	4	4	2	43.845	43.033	2	0.00020733	36928	160511_QHF_FH_JSI11i_2	134.48	121.49			0.55207	0.46929	92.096	13	13	Median	0.5882	0.46929	111.18	3	3	Median	0.39904	0.47256	98.934	4	4	Median	0.49056	0.48132	121.04	4	4	Median	0.54428	0.58721	36.642	2	2	Median	5046300000	2346100000	2700200000	955080000	378040000	577040000	1356400000	661650000	694730000	1909000000	834540000	1074500000	825770000	471850000	353920000	36733	2474;97	34654	225706;225707;225708;225709;225710;225711;225712;225713;225714;225715;225716;225717;225718	304145;304146;304147;304148;304149;304150;304151;304152;304153;304154;304155;304156;304157	304154			13	
MLEQLDMRR	0	Unmodified	1190.59	0.58999756	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	3	4	2	34.329	33.747	2;3	2.7478E-06	29765	160511_QHF_FH_JSI10i_2	143.45	89.897			2.1641	1.8323	81.043	11	9	Median	2.6513	2.2544	30.433	2	2	Median	1.2811	1.5733	42.834	3	2	Median	3.3559	3.2825	97.977	4	4	Median	2.3989	2.405	161.65	2	1	Median	2080800000	813660000	1267100000	337600000	120300000	217310000	712000000	385720000	326280000	762650000	254660000	508000000	268540000	52989000	215550000	36734	2474;97	34655	225719;225720;225721;225722;225723;225724;225725;225726;225727;225728;225729	304158;304159;304160;304161;304162;304163;304164;304165;304166;304167;304168;304169	304167			12	
MLESITNELSLFSK	1	Unmodified	1610.8226	0.82255949	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	99.505	99.349	2	5.7854E-13	85384	160511_QHF_FH_JSI12i_2	123.95	110.29			0.20264	0.25336	144.86	5	5	Median	0.1811	0.15399	NaN	1	1	Median	0.20264	0.25336	NaN	1	1	Median	1.0315	0.97505	237.99	2	2	Median	0.30464	0.33636	NaN	1	1	Median	63920000	40453000	23467000	7315200	6272200	1043000	11055000	9312300	1742600	33530000	16277000	17253000	12020000	8591100	3429000	36735	4069	34656	225730;225731;225732;225733;225734;225735;225736;225737	304170;304171;304172;304173;304174;304175;304176;304177;304178;304179;304180	304171			11	
MLESSSQK	1	Unmodified	908.42733	0.42733213	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.4787	6.3675	2	0.051635	4151	160511_QHF_FH_JSI11i_1	45.7	8.871			1.8971	1.821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8971	1.821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32040000	12406000	19633000	0	0	0	0	0	0	32040000	12406000	19633000	0	0	0	36736	2892	34657	225738	304181	304181			1	
MLESYLHAK	1	Unmodified	1090.5481	0.54811597	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1		1	3	2	34.701	32.371	2;3	0.00022201	27672	160511_QHF_FH_JSI12i_2	81.95	72.992			1.2756	1.3516	162.06	6	6	Median	NaN	NaN	NaN	0	0	Median	4.7978	5.775	NaN	1	1	Median	10.041	10.363	165.51	3	3	Plateau	0.32881	0.36489	129.09	2	2	Median	304570000	121140000	183430000	0	0	0	56212000	19476000	36736000	138670000	32591000	106080000	109690000	69072000	40615000	36737	3371	34658	225739;225740;225741;225742;225743;225744	304182;304183;304184;304185;304186;304187	304182			6	
MLETKWSLLQQQK	2	Acetyl (K)	1673.8811	0.88107742	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.403	72.271	2;3	5.2167E-110	39204	160513_QHF_FH_JSI11Kac_6	272.03	226.15		+	0.46057	0.48492	98.96	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84299	0.97628	NaN	1	0	Median	0.25164	0.24086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	194520000	152190000	42335000	0	0	0	51703000	32414000	19289000	125790000	102750000	23046000	17023000	17023000	0	36738	51	34659	225745;225746;225747	304188;304189;304190;304191	304188	24;26		4	
MLEVFHAIK	1	Unmodified	1086.5896	0.58958685	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.95	4.16		8	9						2	5	4	4	6	56.197	54.439	2;3	2.208E-05	46994	160511_QHF_FH_JSI11i_2	84.213	77.544			0.26569	0.29231	220.5	19	17	Median	0.20209	0.17238	202.09	5	5	Median	1.0518	1.2189	241.14	4	3	Median	1.2289	1.2496	256.31	4	3	Median	1.1042	1.1791	254.23	6	6	Median	1837600000	859880000	977710000	282350000	142630000	139720000	338740000	188380000	150360000	626950000	269610000	357340000	589560000	259260000	330300000	36739	1804	34660	225748;225749;225750;225751;225752;225753;225754;225755;225756;225757;225758;225759;225760;225761;225762;225763;225764;225765;225766	304192;304193;304194;304195;304196;304197;304198;304199;304200;304201;304202;304203;304204;304205;304206;304207;304208;304209;304210;304211	304203			20	
MLEVFHAIKSVK	2	Acetyl (K)	1442.7956	0.79555688	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.629	69.315	3	1.9569E-05	37925	160513_QHF_FH_JSI11Kac_6	101.32	90.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22782000	22782000	0	0	0	0	0	0	0	22782000	22782000	0	0	0	0	36740	1804	34661	225767	304212	304212	1821		1	
MLFATPPSSTYEK	1	Unmodified	1470.7065	0.7064671	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	2	1	58.602	57.76	2	1.8938E-09	52277	160511_QHF_FH_JSI10i_1	108.47	84.44			0.96496	1.0234	37.432	7	5	Median	0.86708	0.74877	17.251	3	3	Plateau	1.1192	1.2906	NaN	1	1	Median	0.99988	0.99693	80.458	2	1	Median	0.89812	1.0234	NaN	1	0	Median	630090000	344420000	285670000	174720000	92265000	82453000	85950000	40752000	45198000	232700000	130990000	101720000	136720000	80418000	56300000	36741	4024	34662	225768;225769;225770;225771;225772;225773;225774;225775	304213;304214;304215;304216;304217;304218;304219;304220;304221	304217			9	
MLFDYLADK	1	Unmodified	1114.5369	0.53688258	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.53	3	6	3					1		3	4	4	2	75.631	74.031	2	0.00012068	65108	160511_QHF_FH_JSI11i_2	109.71	75.462			1.6658	1.875	67.716	13	12	Median	2.4375	1.978	41.727	3	3	Median	1.143	1.3692	45.853	4	3	Median	1.2136	1.1715	68.861	4	4	Median	0.69626	0.75411	154.01	2	2	Median	2890700000	1162400000	1728300000	648650000	260280000	388370000	503680000	235870000	267820000	1387200000	511150000	876040000	351190000	155080000	196120000	36742	1909	34663	225776;225777;225778;225779;225780;225781;225782;225783;225784;225785;225786;225787;225788	304222;304223;304224;304225;304226;304227;304228;304229;304230;304231;304232;304233;304234	304231			13	
MLFFLQLTQK	1	Unmodified	1267.6999	0.69986558	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	91.658	83.59	2	1.5658E-07	46581	160513_QHF_FH_JSI11Kac_6	116.52	77.373			0.67368	0.72392	97.363	5	4	Median	NaN	NaN	NaN	0	0	Median	0.84445	0.9897	90.772	2	2	Median	0.90519	0.8872	170.37	2	2	Median	0.67368	0.72392	NaN	1	0	Median	302610000	145850000	156760000	25193000	0	25193000	139140000	73216000	65920000	81541000	38883000	42659000	56741000	33748000	22993000	36743	400	34664	225789;225790;225791;225792;225793;225794	304235;304236;304237;304238;304239;304240	304236			6	
MLFKDDYPSSPPK	2	Acetyl (K)	1565.7436	0.74358089	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			70.978	60.355	2	0.018557	32312	160513_QHF_FH_JSI10Kac_4	48.741	34.583			0.96031	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96031	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2586100	1829500	756690	0	0	0	2586100	1829500	756690	0	0	0	0	0	0	36744	2063	34665	225795	304241;304242	304242	2132		2	
MLFPEAQR	0	Unmodified	990.49569	0.49568646	3783	Q8WVM0	TFB1M	Dimethyladenosine transferase 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.381	41.907	2	0.0041211	36042	160511_QHF_FH_JSI11i_2	69.176	37.241			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36745	3783	34666	225796	304243	304243			1	
MLFPILLQTMFSAYLGSEQYK	1	Unmodified	2479.2531	0.2531265	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	102.45	95.297	2;3	1.417E-245	57140	160513_QHF_FH_JSI10Kac_6	373.36	317.91			0.94741	1.0923	42.012	5	3	Median	0.61869	0.53186	NaN	1	1	Median	0.87792	1.0501	11.289	3	2	Plateau	1.7232	1.6363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	792200000	412150000	380050000	11341000	7456000	3885300	716040000	378840000	337200000	64822000	25861000	38960000	0	0	0	36746	4617	34667	225797;225798;225799;225800;225801;225802	304244;304245;304246;304247;304248;304249;304250;304251	304251			8	
MLFWACSTNKPEGYR	1	Unmodified	1858.8495	0.84945972	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			67.65	59.89	3	0.00016416	32899	160513_QHF_FH_JSI10Kac_6	87.566	81.149			1.0227	1.2277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0227	1.2277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42373000	15861000	26512000	0	0	0	42373000	15861000	26512000	0	0	0	0	0	0	36747	4013	34668	225803	304252;304253	304253			2	
MLFYSFFK	1	Oxidation (M)	1097.5256	0.52558961	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.41			5					1	4	3	2	3	2	83.951	78.832	2	0.003969	42344	160513_QHF_FH_JSI10Kac_6	79.469	45.826			0.76856	0.81167	17.633	9	1	Median	0.88765	0.76859	29.408	3	1	Median	0.74608	0.87504	4.4221	2	0	Median	0.79305	0.74879	12.182	2	0	Median	0.70409	0.73656	13.733	2	0	Median	1163700000	644830000	518850000	285520000	139870000	145650000	357120000	215860000	141260000	231130000	115230000	115890000	289910000	173860000	116050000	36748	5558	34669	225804;225805;225806;225807;225808;225809;225810;225811;225812;225813	304254;304255;304256;304257;304258;304259;304260;304261;304262;304263;304264	304263		2695	11	
MLFYSFFK	1	Unmodified	1081.5307	0.53067499	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.07		8	7				1	2	4	4	7	6	5	93.222	90.054	2	5.8697E-05	44162	160513_QHF_FH_JSI11Kac_6	128.57	89.774			0.99753	0.98333	63.941	22	14	Median	1.3046	1.1105	67.169	4	2	Median	1.0256	1.1946	61.445	7	4	Median	0.91696	0.87315	67.252	6	4	Median	0.9351	0.97421	82.009	5	4	Median	12618000000	6135400000	6482500000	2726100000	1186900000	1539200000	3958100000	2199400000	1758700000	3320700000	1567300000	1753400000	2612900000	1181800000	1431100000	36749	5558	34669	225814;225815;225816;225817;225818;225819;225820;225821;225822;225823;225824;225825;225826;225827;225828;225829;225830;225831;225832;225833;225834;225835	304265;304266;304267;304268;304269;304270;304271;304272;304273;304274;304275;304276;304277;304278;304279;304280;304281;304282;304283;304284;304285;304286;304287;304288;304289;304290;304291;304292;304293;304294;304295;304296	304274			32	
MLGALYMR	0	Unmodified	953.48268	0.48267894	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	2	1		61.734	52.683	2	0.00074871	28581	160513_QHF_FH_JSI11Kac_6	99.279	79.432			0.8058	0.83615	8.2588	3	3	Plateau	0.91266	0.7455	NaN	1	1	Median	0.7278	0.83615	NaN	1	1	Median	0.89215	0.87508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118660000	56832000	61833000	16063000	7515300	8547900	60162000	28029000	32133000	42440000	21287000	21152000	0	0	0	36750	3582	34670	225836;225837;225838;225839	304297;304298;304299;304300	304298			4	
MLGEALSK	1	Unmodified	847.44734	0.44733929	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.07		7	4				1	2		4	3	4	3	31.017	28.226	2	0.00071366	17299	160513_QHF_FH_JSI11Kac_4	95.531	50.92			0.47925	0.50243	122.37	14	14	Median	1.0777	0.87858	135.09	4	4	Median	0.28778	0.34958	152.34	3	3	Median	0.37543	0.38058	159.56	4	4	Median	0.4892	0.54919	80.284	3	3	Plateau	6609900000	3406000000	3203900000	1961200000	825920000	1135200000	1602600000	865480000	737110000	2169800000	1218600000	951130000	876330000	495950000	380390000	36751	4296	34671	225840;225841;225842;225843;225844;225845;225846;225847;225848;225849;225850;225851;225852;225853	304301;304302;304303;304304;304305;304306;304307;304308;304309;304310;304311;304312;304313;304314	304304			14	
MLGEALSKNPGYIK	2	Acetyl (K)	1561.8174	0.81741453	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.885	62.119	2	0.0019498	33197	160513_QHF_FH_JSI11Kac_5	83.397	48.864			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2423900	2423900	0	0	0	0	0	0	0	2423900	2423900	0	0	0	0	36752	4296	34672	225854	304315	304315	3116		1	
MLGILHDAVVFLIEQLSGAK	1	Unmodified	2153.1918	0.19184688	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.13	97.412	3	0.00034453	57647	160513_QHF_FH_JSI10Kac_6	87.49	73.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80629000	80629000	0	0	0	0	80629000	80629000	0	0	0	0	0	0	0	36753	2204	34673	225855	304316	304316			1	
MLGLTVSLIQDAGR	0	Unmodified	1472.8021	0.80209882	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			90.026	88.945	2	0.027115	74304	160511_QHF_FH_JSI10i_3	48.741	41.095			0.44373	0.54014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44373	0.54014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6337200	5538800	798440	0	0	0	6337200	5538800	798440	0	0	0	0	0	0	36754	5593	34674	225856	304317	304317			1	
MLGNLLRPPYERPELPTCLYVIGLTGISGSGK	1	Unmodified	3500.8524	0.85236684	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			92.495	86.774	4	2.29E-25	49673	160513_QHF_FH_JSI10Kac_6	155.34	139.9			0.44413	0.52055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44413	0.52055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68695000	53795000	14900000	0	0	0	68695000	53795000	14900000	0	0	0	0	0	0	36755	2346	34675	225857	304318	304318			1	
MLGPEGGEGFVVK	1	Acetyl (Protein N-term);Oxidation (M)	1376.6646	0.66460229	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	5.23	4			3	2	3				1	3	3	5	73.833	68.003	2	1.9645E-06	62373	160511_QHF_FH_JSI11i_1	102.52	90.93			1.0046	1.038	93.895	10	2	Median	1.2181	0.99485	NaN	1	0	Median	0.91354	1.0599	13.572	2	0	Median	1.0579	1.0304	22.922	2	0	Median	1.0001	1.0831	138.69	5	2	Median	587370000	277990000	309370000	130360000	53897000	76466000	103580000	45107000	58476000	121920000	52879000	69043000	231500000	126110000	105390000	36756	1775	34676	225858;225859;225860;225861;225862;225863;225864;225865;225866;225867;225868;225869	304319;304320;304321;304322;304323;304324;304325;304326;304327;304328;304329;304330;304331;304332;304333;304334;304335	304319		1463	17	
MLGPEGGEGFVVK	1	Acetyl (Protein N-term)	1360.6697	0.66968766	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	83.585	83.121	2	6.9761E-11	75844	160511_QHF_FH_JSI11i_1	120.68	99.781			0.90284	0.91578	5.0892	4	0	Median	1.0284	0.8281	NaN	1	0	Median	0.79318	0.91864	NaN	1	0	Median	0.94375	0.91389	NaN	1	0	Median	0.86371	0.91767	NaN	1	0	Median	4271000000	2184300000	2086700000	917760000	420710000	497050000	1320600000	764310000	556250000	1186300000	595320000	591000000	846350000	403950000	442400000	36757	1775	34676	225870;225871;225872;225873;225874	304336;304337;304338;304339;304340;304341;304342;304343;304344;304345	304338			10	
MLGQMTDQVADLR	0	Unmodified	1476.7065	0.70648388	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	1	2	2	60.405	59.535	2	4.5365E-41	51709	160511_QHF_FH_JSI11i_2	206.1	186.11			0.94728	0.92287	32.755	8	5	Median	1.6376	1.3785	24.055	3	2	Plateau	0.43594	0.54594	NaN	1	1	Median	0.79213	0.79498	26.387	2	1	Median	0.84052	0.90423	27.599	2	1	Median	2745100000	1374600000	1370500000	730200000	313310000	416890000	296280000	177960000	118310000	1046400000	517320000	529100000	672210000	366010000	306190000	36758	1139	34677	225875;225876;225877;225878;225879;225880;225881;225882	304346;304347;304348;304349;304350;304351;304352;304353;304354;304355	304354			10	
MLGQMTDQVADLR	0	Oxidation (M)	1492.7014	0.7013985	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	48.711	47.713	2	0.0080446	46024	160511_QHF_FH_JSI12i_2	71.03	45.645			1.2677	1.451	49.838	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6748	2.064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95962	1.02	NaN	1	1	Median	94233000	34666000	59567000	0	0	0	23747000	8530900	15216000	0	0	0	70487000	26135000	44351000	36759	1139	34677	225883;225884;225885	304356;304357;304358	304356		772	3	
MLGSMARK	1	2 Oxidation (M)	924.45211	0.45210709	2288	Q0P6D6	CCDC15	Coiled-coil domain-containing protein 15	yes	yes	0	0	2	1				By MS/MS	16	0									1				1	58.223	48.345	2	0.014629	25220	160513_QHF_FH_JSI12Kac_6	48.504	27.35			0.33366	0.36033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33366	0.36033	NaN	1	1	Median	24707000	10603000	14104000	0	0	0	0	0	0	0	0	0	24707000	10603000	14104000	36760	2288	34679	225886	304359	304359		1897;1898	1	
MLGSPVDSVLFYAITTLHNLLLHQEGAK	1	Unmodified	3066.6212	0.62122791	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		103.19	95.67	3;4	2.6492E-228	54381	160513_QHF_FH_JSI9Kac_6	312.69	295.16			0.77096	0.77643	40.366	4	0	Median	0.8891	0.75856	NaN	1	0	Median	0.59791	0.71495	14.959	2	0	Median	1.6796	1.6013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3281600000	1858100000	1423400000	635400000	354560000	280840000	2192500000	1342400000	850150000	453620000	161200000	292420000	0	0	0	36761	1422	34680	225887;225888;225889;225890	304360;304361;304362;304363;304364;304365;304366;304367	304362			8	
MLGSPVDSVLFYAITTLHNLLLHQEGAK	1	Oxidation (M)	3082.6161	0.61614254	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				102.57	93.388	4	5.0716E-135	54035	160513_QHF_FH_JSI9Kac_6	245.92	235.5			0.57091	0.47835	NaN	1	0	Median	0.57091	0.47835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201900000	127320000	74577000	201900000	127320000	74577000	0	0	0	0	0	0	0	0	0	36762	1422	34680	225891	304368;304369	304369		1081	2	
MLGTEGGEGFVVK	1	Acetyl (Protein N-term)	1364.6646	0.66460229	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	80.968	80.514	2	3.7045E-31	73151	160511_QHF_FH_JSI12i_1	161.17	150.02			0.99479	0.81682	262.55	3	1	Plateau	0.99479	0.81682	NaN	1	0	Median	71.583	85.207	NaN	1	1	Median	1.0429	1.0046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1312000000	536670000	775340000	587620000	294640000	292980000	219660000	3894200	215760000	504740000	238140000	266600000	0	0	0	36763	1383	34681	225892;225893;225894;225895;225896	304370;304371;304372;304373;304374;304375	304371			6	
MLGTEGGEGFVVK	1	Acetyl (Protein N-term);Oxidation (M)	1380.6595	0.65951691	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	4.47	2			2	5					1	3	1	4	71.109	65.233	2	0.00013621	57730	160511_QHF_FH_JSI9i_1	93.096	84.563			1.19	1.1602	141.09	5	2	Median	5.7671	4.7739	NaN	1	1	Median	21.647	25.732	NaN	1	1	Median	1.19	1.1602	NaN	1	0	Median	0.97626	1.0358	7.8257	2	0	Median	592760000	65467000	527290000	113920000	23026000	90891000	442790000	26219000	416570000	2485400	1050500	1434900	33570000	15172000	18398000	36764	1383	34681	225897;225898;225899;225900;225901;225902;225903;225904;225905	304376;304377;304378;304379;304380;304381;304382;304383	304380		1019	8	
MLGYFSLVGLLR	0	Oxidation (M)	1383.7584	0.75844309	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.929	86.538	2	3.0607E-12	46691	160513_QHF_FH_JSI12Kac_6	124.81	101.38			1.4502	1.3109	25.805	4	0	Median	1.6022	1.3786	NaN	1	0	Median	0.87969	1.0509	NaN	1	0	Median	1.3127	1.2466	NaN	1	0	Median	1.8314	1.9386	NaN	1	0	Median	1607500000	735590000	871920000	373790000	124540000	249240000	627010000	328080000	298930000	317540000	145440000	172100000	289180000	137520000	151650000	36765	5494	34682	225906;225907;225908;225909	304384;304385;304386;304387;304388;304389;304390	304388		2679	7	
MLGYFSLVGLLR	0	Unmodified	1367.7635	0.76352847	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	96.611	88.003	2;3	6.2796E-61	49824	160513_QHF_FH_JSI9Kac_6	244.55	200.11			1.0652	0.98537	56.242	4	3	Median	0.90119	0.76745	NaN	1	1	Median	1.259	1.4858	NaN	1	0	Median	1.3317	1.2652	NaN	1	1	Median	0.40679	0.42661	NaN	1	1	Median	7990500000	3850200000	4140200000	1524400000	753210000	771170000	2778000000	1285300000	1492800000	2504400000	944910000	1559500000	1183700000	866830000	316840000	36766	5494	34682	225910;225911;225912;225913;225914;225915	304391;304392;304393;304394;304395;304396	304393			6	
MLHDYIGDK	1	Unmodified	1090.5117	0.51173046	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	4.02		10							1	4	3	2	2	27.546	25.907	2;3	0.0041318	22661	160511_QHF_FH_JSI10i_2	51.276	30.406			1.3464	1.4282	116.88	11	11	Median	1.1448	0.97952	78.284	4	4	Median	0.57036	0.70236	75.242	3	3	Plateau	7.4597	7.5251	22.358	2	2	Median	0.35137	0.39563	116.68	2	2	Median	1196900000	587990000	608880000	252170000	108710000	143450000	386620000	201330000	185290000	295330000	61517000	233810000	262760000	216440000	46323000	36767	1862	34683	225916;225917;225918;225919;225920;225921;225922;225923;225924;225925;225926	304397;304398;304399;304400;304401;304402;304403;304404;304405;304406;304407	304406			11	
MLHFLTAVVGSTCDVK	1	Unmodified	1776.8903	0.8902619	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	2	2	1	78.551	77.091	3	6.1922E-06	67389	160511_QHF_FH_JSI12i_3	106.52	95.58			0.18051	0.19089	139.33	6	4	Linear	3.2287	2.7292	NaN	1	1	Median	0.51907	0.60317	257.93	2	2	Median	0.69684	0.65999	101.46	2	1	Median	1.4816	1.5406	NaN	1	0	Median	258280000	169860000	88420000	11861000	2965800	8895600	100910000	83001000	17905000	105310000	70508000	34802000	40202000	13384000	26818000	36768	3801	34684	225927;225928;225929;225930;225931;225932	304408;304409;304410;304411;304412;304413;304414	304413			7	
MLHYMTVDDLLSLK	1	Unmodified	1677.847	0.8470001	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	95.719	95.353	3	9.0146E-05	82137	160511_QHF_FH_JSI12i_2	97.86	93.155			1.1278	1.1019	52.955	5	3	Median	1.1278	0.99347	NaN	1	1	Median	0.88899	1.1019	NaN	1	0	Median	1.1656	1.1364	NaN	1	0	Median	1.0265	1.1225	105.34	2	2	Median	52567000	29467000	23101000	5378200	3080700	2297500	10235000	5926900	4308000	13845000	7841700	6003500	23109000	12618000	10492000	36769	3353	34685	225933;225934;225935;225936;225937	304415;304416;304417;304418;304419;304420;304421	304415			7	
MLIDFSYLLSK	1	Unmodified	1328.705	0.70501054	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			2	1	95.407	85.99	2	7.4249E-05	46705	160513_QHF_FH_JSI12Kac_6	98.943	57.956			3.2439	3.3373	19.259	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0003	2.9124	NaN	1	1	Median	3.5074	3.8242	NaN	1	1	Median	47609000	11489000	36120000	0	0	0	0	0	0	31122000	7711700	23410000	16487000	3777400	12709000	36770	666	34686	225938;225939;225940	304422;304423;304424	304424			3	
MLINQHTLLFGGDTNPVHPK	1	Unmodified	2231.1521	0.15210733	2631	Q15120	PDK3	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	67.45	67.302	4	2.4676E-10	59951	160511_QHF_FH_JSI11i_3	118.96	97.161			1.1206	1.0905	14.141	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2812	1.2052	NaN	1	0	Median	0.98009	0.98675	NaN	1	0	Median	155990000	75772000	80215000	0	0	0	0	0	0	74766000	33751000	41014000	81221000	42020000	39201000	36771	2631	34687	225941;225942	304425;304426;304427	304426			3	
MLIPQLK	1	Unmodified	841.50955	0.50954561	5099	Q9NX70	MED29	Mediator of RNA polymerase II transcription subunit 29	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.355	59.032	2	0.013697	50619	160511_QHF_FH_JSI12i_2	69.39	10.729			0.41146	0.43931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41146	0.43931	NaN	1	1	Median	16264000	12500000	3764000	0	0	0	0	0	0	0	0	0	16264000	12500000	3764000	36772	5099	34688	225943	304428	304428			1	
MLIPYIEHWPR	0	Unmodified	1453.754	0.75402642	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.61		7	4						3	4	3	3	4	82.754	80.104	3	2.4251E-05	71065	160511_QHF_FH_JSI12i_3	77.744	65.768			1.2159	1.1888	32.577	11	4	Median	1.7118	1.4591	35.151	3	2	Median	1.0676	1.2699	22.347	2	0	Median	0.94323	0.89527	40.107	2	0	Median	1.1066	1.132	37.858	4	2	Median	391080000	168990000	222090000	48945000	23435000	25510000	75396000	35741000	39655000	117870000	46521000	71346000	148870000	63293000	85575000	36773	493	34689	225944;225945;225946;225947;225948;225949;225950;225951;225952;225953;225954;225955;225956;225957	304429;304430;304431;304432;304433;304434;304435;304436;304437;304438;304439;304440;304441;304442;304443;304444;304445;304446;304447;304448;304449	304446			21	
MLISILTER	0	Oxidation (M)	1090.6056	0.60563084	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				74.663	64.115	2	0.037892	33083	160513_QHF_FH_JSI9Kac_5	39.022	34.909			0.97378	0.82073	NaN	1	0	Median	0.97378	0.82073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3942600	2237100	1705500	3942600	2237100	1705500	0	0	0	0	0	0	0	0	0	36774	1018	34690	225958	304450	304450			1	
MLISILTER	0	Unmodified	1074.6107	0.61071622	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.7	6.13			1						2	1	1	1		77.571	71.965	2	4.8397E-07	39153	160513_QHF_FH_JSI10Kac_6	134.48	99.123			1.9583	1.5982	63.042	3	2	Median	1.9583	1.5982	NaN	1	1	Median	0.77138	0.88335	NaN	1	0	Median	3.1817	3.1145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189480000	80155000	109320000	37791000	15056000	22735000	111910000	55856000	56050000	39781000	9243300	30538000	0	0	0	36775	1018	34690	225959;225960;225961	304451;304452;304453;304454	304454			4	
MLISSIK	1	Unmodified	790.46226	0.46226107	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	40.48	39.712	2	0.011468	34166	160511_QHF_FH_JSI11i_2	70.912	35.807			0.98254	0.97515	17.136	4	0	Median	1.005	0.85533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2266	1.244	NaN	1	0	Median	0.90574	0.97515	12.155	2	0	Median	897230000	447020000	450210000	84262000	36001000	48261000	0	0	0	178460000	96795000	81669000	634500000	314230000	320280000	36776	1317	34691	225962;225963;225964;225965	304455;304456;304457;304458	304458			4	
MLISTSSGYLLILHDLDLTK	1	Unmodified	2232.2076	0.20755652	2916	Q5QP82	DCAF10	DDB1- and CUL4-associated factor 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	96.096	87.908	3	1.3102E-19	51932	160513_QHF_FH_JSI10Kac_6	145.75	137.53			0.52689	0.57606	34.603	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.59487	0.7097	NaN	1	0	Median	1.1452	1.1152	NaN	1	0	Median	0.52689	0.56503	NaN	1	0	Median	361710000	219540000	142170000	0	0	0	125900000	79386000	46514000	96900000	46834000	50066000	138920000	93323000	45592000	36777	2916	34692	225966;225967;225968	304459;304460;304461;304462	304461			4	
MLITILGTVK	1	Unmodified	1087.6675	0.66750282	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	6.2		7	5						5	4	5	4	4	85.082	82.298	2	5.333E-12	41004	160513_QHF_FH_JSI9Kac_6	152.34	122.16			0.97818	0.9345	67.207	15	11	Median	1.143	0.97088	41.225	4	2	Median	0.7705	0.8925	79.334	4	3	Median	0.97818	0.93817	108.66	3	3	Median	0.66998	0.68717	69.892	4	3	Median	3014100000	1608300000	1405800000	880710000	435930000	444790000	964580000	543720000	420860000	806480000	429350000	377130000	362300000	199310000	163000000	36778	1130	34693	225969;225970;225971;225972;225973;225974;225975;225976;225977;225978;225979;225980;225981;225982;225983;225984;225985	304463;304464;304465;304466;304467;304468;304469;304470;304471;304472;304473;304474;304475;304476;304477;304478;304479;304480;304481;304482;304483	304478			21	
MLITILGTVK	1	Oxidation (M)	1103.6624	0.66241744	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.5	0.5								3	3	2	2	1	1	79.067	69.808	2	0.0020327	37460	160513_QHF_FH_JSI9Kac_6	73.573	59.415			0.95429	0.91214	19.43	6	2	Median	0.92483	0.79084	0.2004	2	1	Median	0.84026	1.0013	30.084	2	1	Median	1.1368	1.0926	NaN	1	0	Median	0.98233	1.0278	NaN	1	0	Median	310260000	164030000	146230000	131750000	66828000	64925000	125050000	70657000	54394000	3588000	1589100	1998800	49867000	24953000	24914000	36779	1130	34693	225986;225987;225988;225989;225990;225991	304484;304485;304486;304487;304488	304487		754	5	
MLITILGTVKPNANR	1	Unmodified	1639.9443	0.94434638	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	4	1	2	76.749	68.879	2;3	5.6362E-51	36636	160513_QHF_FH_JSI9Kac_6	215.46	179.13			0.76898	0.72127	74.465	9	6	Median	0.95246	0.81407	0.35305	2	0	Median	0.36715	0.43694	113.72	4	4	Median	0.76898	0.72127	NaN	1	1	Median	0.53695	0.58174	9.6443	2	1	Median	4050100000	2810400000	1239700000	765500000	469770000	295730000	2920100000	2126800000	793390000	202040000	110390000	91653000	162460000	103510000	58947000	36780	1130	34694	225992;225993;225994;225995;225996;225997;225998;225999;226000	304489;304490;304491;304492;304493;304494;304495;304496;304497;304498;304499;304500	304490			12	
MLITILGTVKPNANR	1	Oxidation (M)	1655.9393	0.939261	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	3		1	71.505	63.126	2;3	0.00056713	34808	160513_QHF_FH_JSI10Kac_6	89.466	65.585			1.6827	1.935	102.27	3	3	Median	1.0468	0.90056	130.46	2	2	Median	1.6827	1.935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168980000	89340000	79642000	97537000	46062000	51475000	67239000	39073000	28167000	0	0	0	4205900	4205900	0	36781	1130	34694	226001;226002;226003;226004;226005;226006	304501;304502;304503;304504;304505;304506	304506		754	6	
MLIYDPAK	1	Unmodified	949.49429	0.49428948	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.43	4	4	1				3	4		4	4	4	4	53.743	48.527	2	0.0016273	41475	160511_QHF_FH_JSI12i_2	86.953	39.887			0.84751	0.94911	20.024	16	2	Plateau	1.0385	0.87456	27.953	4	1	Median	0.74505	0.89403	21.918	4	0	Median	0.87853	0.9555	13.355	4	0	Linear	0.70975	0.75723	21.882	4	1	Median	2445900000	1308800000	1137100000	464360000	236280000	228080000	606860000	326540000	280320000	874470000	471500000	402970000	500200000	274440000	225750000	36782	850	34695	226007;226008;226009;226010;226011;226012;226013;226014;226015;226016;226017;226018;226019;226020;226021;226022	304507;304508;304509;304510;304511;304512;304513;304514;304515;304516;304517;304518;304519;304520;304521;304522;304523;304524;304525;304526;304527;304528;304529;304530	304509			24	
MLIYSSK	1	Unmodified	840.44153	0.44152563	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		38.927	29.654	2	0.02582	16024	160513_QHF_FH_JSI9Kac_6	76.035	58.268			1.7809	1.6309	23.561	2	2	Median	2.2356	1.9266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4187	1.3807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29284000	13790000	15494000	12759000	4653100	8105800	0	0	0	16526000	9137200	7388400	0	0	0	36783	4793	34696	226023;226024	304531;304532	304532			2	
MLLAQINR	0	Acetyl (Protein N-term)	999.55354	0.55353569	1781	P52747	ZNF143	Zinc finger protein 143	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	83.055	82.62	2	0.0010444	75094	160511_QHF_FH_JSI10i_1	73.039	53.335			1.2971	1.3368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2971	1.3368	NaN	1	0	Median	16486000	10240000	6246100	0	0	0	0	0	0	7744700	5976300	1768400	8741700	4264000	4477700	36784	1781	34698	226025;226026;226027	304533;304534;304535	304535			3	
MLLCEAVAAVMAK	1	Unmodified	1405.7131	0.71314916	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	100.04	100.02	2	6.1039E-05	87916	160511_QHF_FH_JSI11i_2	75.197	63.15			0.6063	0.74483	76.949	3	3	Median	NaN	NaN	NaN	0	0	Median	0.6063	0.74483	NaN	1	1	Median	0.56747	0.52142	NaN	1	1	Median	2.1208	2.2787	NaN	1	1	Median	64253000	35128000	29125000	0	0	0	23629000	13760000	9868800	20943000	13371000	7572300	19681000	7996700	11684000	36785	1818	34699	226028;226029;226030;226031;226032;226033	304536;304537;304538;304539;304540;304541;304542	304540			7	
MLLDPMGGIVMTNDGNAILR	0	Oxidation (M)	2146.0585	0.058466216	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	3	1	1	98.931	98.793	2;3	2.7245E-05	87498	160511_QHF_FH_JSI10i_2	82.362	61.409			1.1605	1.2772	3.8922	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0595	1.3129	NaN	1	1	Median	1.271	1.2425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20851000	7503800	13348000	0	0	0	10180000	3045100	7135000	10671000	4458700	6212600	0	0	0	36786	1655	34700	226034;226035;226036;226037;226038;226039	304543;304544;304545;304546;304547;304548	304548		1332;1333;1334	6	
MLLDPMGGIVMTNDGNAILR	0	Unmodified	2130.0636	0.063551594	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	101.4	101.27	2;3	2.8781E-25	89113	160511_QHF_FH_JSI9i_2	241.76	201.65			1.1751	1.3123	15.636	5	0	Median	1.6611	1.3893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3542	1.3663	30.301	2	0	Median	1.1622	1.2875	2.6983	2	0	Median	3522100000	1550700000	1971500000	573750000	224940000	348810000	0	0	0	872680000	309250000	563430000	2075700000	1016500000	1059200000	36787	1655	34700	226040;226041;226042;226043;226044;226045	304549;304550;304551	304549			3	
MLLDSEQHPCQLK	1	Unmodified	1597.7592	0.75924773	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	38.95	37.992	3	0.0034397	32454	160511_QHF_FH_JSI12i_2	48.14	38.089			0.9416	0.91169	19.222	4	1	Median	1.0922	0.96465	NaN	1	0	Median	0.71551	0.86164	NaN	1	1	Median	0.81178	0.82212	NaN	1	0	Median	1.1597	1.2628	NaN	1	0	Median	302030000	152440000	149580000	30554000	12702000	17852000	63154000	35456000	27698000	127730000	68502000	59229000	80589000	35784000	44805000	36788	4000	34701	226046;226047;226048;226049	304552;304553;304554	304552			3	
MLLDSVLTTHER	0	Unmodified	1413.7286	0.72859953	4086	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	60.412	59.717	3	1.8771E-11	52885	160511_QHF_FH_JSI10i_2	147.26	147.26			0.86101	1.0019	25.895	6	2	Median	1.265	1.058	NaN	1	0	Median	0.88061	1.0566	NaN	1	0	Median	0.81284	0.83097	37.022	3	2	Median	0.84184	0.95012	NaN	1	0	Median	805260000	408800000	396460000	64240000	29431000	34809000	149520000	85718000	63797000	522990000	256180000	266810000	68516000	37473000	31043000	36789	4086	34702	226050;226051;226052;226053;226054;226055	304555;304556;304557;304558;304559;304560;304561	304561			6	
MLLFVEQVASK	1	Acetyl (Protein N-term)	1305.7003	0.70025951	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	1	0	0	By MS/MS				2	0		1								1				103.71	103.63	2	1.9511E-06	91467	160511_QHF_FH_JSI9i_2	113.62	94.351			1.6502	1.3973	NaN	1	1	Median	1.6502	1.3973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9692700	2591400	7101300	9692700	2591400	7101300	0	0	0	0	0	0	0	0	0	36790	3206	34703	226056	304562	304562			1	
MLLGHMPTVELLK	1	Unmodified	1480.8146	0.81457776	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	2	4	2	82.886	82.251	2;3	5.7205E-06	73212	160511_QHF_FH_JSI11i_3	102.87	90.105			1.0292	1.0989	50.375	10	5	Median	0.76937	0.66713	87.354	3	3	Plateau	0.70821	0.83946	42.909	2	0	Median	0.71203	0.68693	45.822	3	1	Plateau	1.1208	1.1882	15.877	2	1	Median	574690000	292480000	282220000	83146000	45005000	38141000	86268000	52690000	33578000	230630000	112730000	117910000	174640000	82055000	92589000	36791	2909	34704	226057;226058;226059;226060;226061;226062;226063;226064;226065;226066;226067	304563;304564;304565;304566;304567;304568;304569;304570;304571;304572;304573;304574;304575;304576;304577;304578;304579	304564			17	
MLLHEGQHPAQLR	0	Unmodified	1528.7933	0.79326547	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		25.121	25.121	3;4	0.00011516	21479	160511_QHF_FH_JSI11i_3	63.602	57.327			0.47979	0.44537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47979	0.44537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88918000	54244000	34673000	0	0	0	0	0	0	88918000	54244000	34673000	0	0	0	36792	2859	34705	226068;226069	304580;304581	304580			2	
MLLHSEQHPGQLK	1	Unmodified	1516.782	0.78203208	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	4.01		1	16						2	4	3	5	7	24.538	23.198	2;3;4	4.3091E-07	18894	160511_QHF_FH_JSI12i_3	180.36	144.41			1.056	0.86938	97.981	19	16	Median	2.6931	2.1557	67.201	4	2	Linear	1.6347	1.9891	79.625	3	2	Median	0.76423	0.7221	105.08	5	5	Median	0.38714	0.39323	112.15	7	7	Median	2427800000	1328200000	1099600000	50622000	20545000	30077000	180390000	81553000	98840000	1049100000	489240000	559820000	1147700000	736900000	410840000	36793	1394	34706	226070;226071;226072;226073;226074;226075;226076;226077;226078;226079;226080;226081;226082;226083;226084;226085;226086;226087;226088	304582;304583;304584;304585;304586;304587;304588;304589;304590;304591;304592;304593;304594;304595;304596;304597;304598;304599;304600;304601;304602;304603	304602			21	
MLLHSEQHPGQLK	1	Oxidation (M)	1532.7769	0.7769467	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									1	3	20.232	20.247	3	2.9158E-05	18651	160511_QHF_FH_JSI12i_3	92.295	83.101			1.6522	1.6916	18.342	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8535	1.6838	NaN	1	1	Median	1.927	1.9805	22.297	2	1	Median	146420000	59899000	86520000	0	0	0	0	0	0	40584000	12549000	28035000	105830000	47350000	58484000	36794	1394	34706	226089;226090;226091;226092	304604;304605;304606;304607;304608	304605		1042	5	
MLLLEILHEIK	1	Unmodified	1350.7945	0.79449425	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.85	6.63		2	5						6	3	4	3	3	97.853	94.574	2;3	3.2516E-12	46115	160513_QHF_FH_JSI12Kac_6	142.08	124.03			1.1619	0.96117	50.328	11	8	Median	1.1772	0.96117	13.103	3	2	Median	0.92156	1.0816	56.615	4	3	Median	0.70349	0.66966	82.609	2	1	Median	0.84877	0.89031	74.831	2	2	Median	1373100000	720210000	652860000	214880000	90557000	124330000	562380000	324780000	237600000	168280000	82592000	85684000	427520000	222280000	205240000	36795	4109	34707	226093;226094;226095;226096;226097;226098;226099;226100;226101;226102;226103;226104;226105	304609;304610;304611;304612;304613;304614;304615;304616;304617;304618;304619;304620;304621;304622;304623	304620			15	
MLLLEILHEIK	1	Oxidation (M)	1366.7894	0.78940887	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	1	0		By MS/MS		By MS/MS	6.25	5.63			3						1		1		3	98.119	98.139	3	0.00010471	42879	160513_QHF_FH_JSI12Kac_6	87.001	65.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8514200	3796200	4718100	0	0	0	0	0	0	0	0	0	8514200	3796200	4718100	36796	4109	34707	226106;226107;226108;226109	304624;304625;304626;304627	304627		2392	4	
MLLNDFLNDQNRDK	1	Unmodified	1734.8359	0.83591814	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	67.042	66.894	3	0.0001269	59594	160511_QHF_FH_JSI11i_3	81.632	72.348			1.0755	1.0509	22.88	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94024	0.89389	NaN	1	0	Median	1.2302	1.2354	NaN	1	1	Median	222920000	106340000	116580000	0	0	0	0	0	0	129060000	60720000	68335000	93860000	45619000	48241000	36797	2170	34708	226110;226111	304628;304629;304630	304629			3	
MLLNLHK	1	Unmodified	867.50004	0.50004356	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.26	3.04		8	10						1	4	5	6	4	36.897	35.6	2;3	0.0008668	28964	160511_QHF_FH_JSI9i_3	102.98	74.873			1.4082	1.2332	70.367	18	13	Median	1.4541	1.1863	66.429	4	2	Median	1.2389	1.4324	79.419	4	3	Median	1.6584	1.5969	75.64	6	6	Median	0.88508	0.88228	70.187	4	2	Median	6773700000	3524800000	3248900000	1272800000	387520000	885250000	1111400000	483500000	627950000	1995900000	1182600000	813340000	2393600000	1471200000	922400000	36798	144	34709	226112;226113;226114;226115;226116;226117;226118;226119;226120;226121;226122;226123;226124;226125;226126;226127;226128;226129;226130	304631;304632;304633;304634;304635;304636;304637;304638;304639;304640;304641;304642;304643;304644;304645;304646;304647;304648;304649;304650;304651;304652;304653;304654;304655;304656	304644			26	
MLLNLHK	1	Oxidation (M)	883.49496	0.49495818	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	35.295	35.295	3	0.010265	30826	160511_QHF_FH_JSI11i_3	50.966	32.235			0.69647	0.64544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69647	0.64544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44540000	23457000	21083000	0	0	0	0	0	0	44540000	23457000	21083000	0	0	0	36799	144	34709	226131;226132	304657;304658	304657		65	2	
MLLNLHKK	2	Acetyl (K)	1037.6056	0.60557127	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	1	0	0	1	By MS/MS		By MS/MS		16	0									2	1		1		51.543	42.067	2;3	0.0012729	22912	160513_QHF_FH_JSI11Kac_6	104.45	61.201			0.37624	0.3812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37624	0.3812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8947500	7720200	1227300	1559500	1559500	0	0	0	0	7388000	6160600	1227300	0	0	0	36800	144	34710	226133;226134	304659;304660	304659	86		2	
MLLNQHSLLFGGK	1	Unmodified	1456.7861	0.78605483	2630	Q15118	PDK1	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			68.074	66.594	3	0.00017595	55823	160511_QHF_FH_JSI10i_3	79.466	58.626			2.0847	2.3512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0847	2.3512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31399000	10839000	20560000	0	0	0	31399000	10839000	20560000	0	0	0	0	0	0	36801	2630	34711	226135	304661	304661			1	
MLLPNILLTGTPGVGK	1	Unmodified	1622.9429	0.9429494	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	0.3		1	9							4	2	2	2	101.36	101.29	2;3	2.2023E-15	90381	160511_QHF_FH_JSI11i_3	164.81	158.15			1.4115	1.3188	23.769	9	1	Median	1.5653	1.2902	18.043	3	1	Median	1.0243	1.2126	21.501	2	0	Median	1.579	1.4697	15.322	2	0	Median	1.6777	1.6829	39.974	2	0	Median	998200000	424530000	573670000	176260000	76321000	99936000	155920000	85204000	70715000	369450000	141760000	227690000	296570000	121240000	175330000	36802	5590	34712	226136;226137;226138;226139;226140;226141;226142;226143;226144;226145	304662;304663;304664;304665;304666;304667;304668;304669	304662			7	
MLLPSGSLFFLR	0	Unmodified	1379.7635	0.76352847	5744	Q9Y6N7;Q9HCK4	ROBO1;ROBO2	Roundabout homolog 1;Roundabout homolog 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	95.796	89.06	2	0.0017813	48235	160513_QHF_FH_JSI11Kac_6	73.067	54.287			1.0815	1.0508	26.686	5	1	Median	1.9578	1.6629	3.8307	2	1	Median	0.84655	1.0132	NaN	1	0	Median	1.0815	1.0508	NaN	1	0	Median	0.94855	1.0078	NaN	1	0	Median	346200000	165800000	180400000	100800000	35142000	65658000	91620000	51257000	40363000	99466000	44448000	55018000	54315000	34956000	19358000	36803	5744	34713	226146;226147;226148;226149;226150	304670;304671;304672;304673;304674;304675	304671			6	
MLLQSSEGR	0	Unmodified	1019.507	0.50697943	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.85	1	7						3		3	3	2	3	24.782	21.405	2	0.00015693	18846	160511_QHF_FH_JSI10i_2	106.04	91.885			0.98451	1.0438	49.77	10	6	Median	1.0069	0.80941	42.686	3	2	Median	0.91938	1.076	55.22	3	3	Median	0.60836	0.60254	77.936	2	0	Median	1.1418	1.2465	25.312	2	1	Median	1105400000	602690000	502660000	274070000	134960000	139110000	490090000	277410000	212680000	159630000	112680000	46955000	181560000	77645000	103910000	36804	552	34714	226151;226152;226153;226154;226155;226156;226157;226158;226159;226160;226161	304676;304677;304678;304679;304680;304681;304682;304683;304684;304685;304686;304687;304688	304688			13	
MLLQWYQHFK	1	Unmodified	1392.7013	0.70126256	5509	Q9Y2B1	TMEM5	Transmembrane protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	75.893	67.59	3	7.3912E-10	36004	160513_QHF_FH_JSI9Kac_6	127.3	101.18			0.75083	0.68163	45.656	6	6	Median	0.80436	0.68746	NaN	1	1	Median	0.57574	0.68536	71.039	2	2	Median	0.70086	0.67584	NaN	1	1	Median	0.90872	0.9744	60.806	2	2	Median	170720000	87553000	83168000	19269000	10904000	8364100	88076000	45323000	42753000	18872000	10611000	8260300	44504000	20714000	23790000	36805	5509	34715	226162;226163;226164;226165;226166;226167	304689;304690;304691;304692;304693;304694	304690			6	
MLLSAPSENDR	0	Unmodified	1231.5867	0.58668632	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		38.222	37.477	2	0.0013614	32079	160511_QHF_FH_JSI11i_2	68.846	55.887			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36806	3653	34716	226168;226169	304695;304696	304696			2	
MLLSLPEK	1	Unmodified	929.52559	0.52558961	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	60.338	59.572	2	0.0030985	51173	160511_QHF_FH_JSI12i_2	75.109	38.522			0.88814	0.92228	22.842	6	2	Median	1.0461	0.89026	NaN	1	0	Median	0.79647	0.95545	NaN	1	0	Median	0.71141	0.72023	29.969	3	2	Median	0.99036	1.1102	NaN	1	0	Median	647200000	330990000	316200000	82542000	41001000	41540000	91659000	50647000	41012000	355900000	181450000	174450000	117100000	57898000	59201000	36807	3499	34717	226170;226171;226172;226173;226174;226175	304697;304698;304699;304700;304701;304702	304698			6	
MLLSPGGVSQPLTASLAR	0	Unmodified	1796.9819	0.9818541	3129	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	82.521	82.142	2	5.7062E-11	71245	160511_QHF_FH_JSI12i_3	145.71	115.38			1.0894	1.0396	11.805	4	2	Median	1.0793	0.9495	NaN	1	0	Median	0.78085	0.9619	NaN	1	0	Median	1.2793	1.2074	NaN	1	1	Median	1.0997	1.1235	NaN	1	1	Median	75252000	32012000	43240000	16905000	7689200	9216300	20001000	11660000	8341200	22384000	6845100	15539000	15961000	5817600	10143000	36808	3129	34718	226176;226177;226178;226179	304703;304704;304705	304705			3	
MLLSWDGGESR	0	Unmodified	1249.5761	0.57612163	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	60.271	59.338	2	0.0059291	50731	160511_QHF_FH_JSI12i_2	52.79	48.177			1.1709	1.1825	4.8138	3	0	Median	1.2703	1.1083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1709	1.2177	NaN	1	0	Median	1.0691	1.1825	NaN	1	0	Median	81439000	42883000	38556000	24139000	11173000	12966000	0	0	0	36378000	21315000	15064000	20921000	10395000	10526000	36809	3013	34719	226180;226181;226182	304706;304707;304708	304706			2	
MLLTVYCVR	0	Unmodified	1153.5988	0.59877133	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0		By MS/MS		By matching	16	0									2		1		1	72.523	63.988	2	0.013254	35304	160513_QHF_FH_JSI10Kac_6	54.157	0			1.0212	1.1453	17.556	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85187	1.0116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2241	1.2966	NaN	1	0	Median	75396000	36324000	39071000	0	0	0	44095000	23938000	20158000	0	0	0	31300000	12387000	18914000	36810	2968	34720	226183;226184	304709	304709			1	
MLLVDELR	0	Unmodified	987.5423	0.54230231	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	68.933	67.843	2	0.00038974	60212	160511_QHF_FH_JSI10i_2	109.86	61.359			0.83568	0.9215	17.21	6	0	Median	1.3465	1.1523	22.202	2	0	Median	0.76268	0.91169	3.267	2	0	Median	0.89901	0.91015	NaN	1	0	Median	0.73721	0.82384	NaN	1	0	Median	684770000	348840000	335930000	120220000	54073000	66145000	187640000	110780000	76860000	254600000	120700000	133900000	122320000	63284000	59032000	36811	1137	34721	226185;226186;226187;226188;226189;226190	304710;304711;304712;304713;304714;304715;304716;304717;304718;304719;304720	304719			11	
MLLVDELRDAVLLLFANK	1	Unmodified	2072.1704	0.17038315	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	2	4	2	1	103.23	97.172	2;3;4	5.6801E-148	57260	160513_QHF_FH_JSI10Kac_6	236.02	227.02			1.0115	1.0772	15.621	9	1	Median	1.0783	0.92339	16.787	2	1	Median	0.96963	1.1469	8.4196	4	0	Median	0.95521	0.94496	18.517	2	0	Median	1.1315	1.2386	NaN	1	0	Median	3819900000	1872100000	1947800000	827300000	422660000	404640000	2971800000	1439000000	1532800000	11520000	5610700	5909800	9268500	4796700	4471800	36812	1137	34722	226191;226192;226193;226194;226195;226196;226197;226198;226199	304721;304722;304723;304724;304725;304726;304727;304728;304729;304730;304731;304732;304733;304734	304729			14	
MLLVDELRDAVLLLFANK	1	Oxidation (M)	2088.1653	0.16529777	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			101.27	93.819	3	1.487E-17	53297	160513_QHF_FH_JSI9Kac_6	144.68	133.63			1.1076	1.1293	2.2347	2	0	Median	1.3174	1.1473	NaN	1	0	Median	0.93126	1.1116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	518330000	240340000	277990000	261000000	114220000	146780000	257330000	126110000	131220000	0	0	0	0	0	0	36813	1137	34722	226200;226201	304735;304736;304737;304738	304735		763	4	
MLLYTEVTR	0	Unmodified	1124.59	0.58998078	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.6	1	4	4					4	4	4	5	4	4	59.661	54.519	2	2.0706E-16	29504	160513_QHF_FH_JSI11Kac_6	164.72	103.94			1.0932	1.0354	27.973	17	2	Median	1.1757	1.0028	29.689	4	0	Median	0.86962	1.0362	27.997	5	1	Median	1.0415	0.99985	16.641	4	0	Median	0.85746	0.92596	40.099	4	1	Median	6612900000	3280500000	3332400000	1170500000	527270000	643270000	1802700000	932340000	870320000	1998500000	1001300000	997290000	1641200000	819630000	821530000	36814	1702;1368	34723	226202;226203;226204;226205;226206;226207;226208;226209;226210;226211;226212;226213;226214;226215;226216;226217;226218	304739;304740;304741;304742;304743;304744;304745;304746;304747;304748;304749;304750;304751;304752;304753;304754;304755;304756;304757;304758;304759;304760;304761;304762;304763;304764;304765	304748			27	
MLLYTEVTR	0	Oxidation (M)	1140.5849	0.5848954	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.64							1	5	4	2	3	2	3	53.809	43.697	2	0.0078027	23348	160513_QHF_FH_JSI9Kac_5	66.692	29.134			0.65302	0.67709	36.125	9	3	Linear	0.87558	0.74797	NaN	1	0	Median	0.69877	0.833	36.951	3	2	Plateau	0.91926	0.89826	60.495	2	1	Median	0.6783	0.74356	28.389	3	0	Plateau	121430000	66450000	54983000	19466000	10456000	9009600	35829000	17461000	18368000	29442000	14995000	14447000	36696000	23538000	13158000	36815	1702;1368	34723	226219;226220;226221;226222;226223;226224;226225;226226;226227;226228	304766;304767;304768;304769;304770;304771;304772;304773;304774	304766		1002	6	
MLLYTEVTRYLDFK	1	Unmodified	1790.9277	0.92769326	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	90.848	82.888	3	0.0032862	44307	160513_QHF_FH_JSI12Kac_6	53.754	34.921			0.23933	0.26566	55.324	2	1	Median	NaN	NaN	NaN	0	0	Median	0.15552	0.17965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36831	0.39285	NaN	1	0	Median	137260000	94936000	42324000	25398000	0	25398000	56793000	52617000	4175300	0	0	0	55069000	42319000	12751000	36816	1702;1368	34724	226229;226230;226231	304775;304776;304777	304776			3	
MLMMMALLVPLVYTIK	1	Unmodified	1866.0255	0.025498515	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	5.92			7	1					15	5	6	6	6	103.76	98.031	2;3	4.0811E-43	54373	160513_QHF_FH_JSI9Kac_6	232.14	200.13			0.89958	0.9629	190.59	20	13	Median	0.61317	0.52949	287.81	4	4	Median	0.7678	0.90415	232.87	6	4	Median	1.4404	1.38	64.951	5	2	Median	0.74017	0.79619	155.91	5	3	Median	5315900000	2678600000	2637400000	1633300000	662500000	970810000	2983300000	1749600000	1233700000	479790000	129290000	350500000	219520000	137160000	82369000	36817	905	34725	226232;226233;226234;226235;226236;226237;226238;226239;226240;226241;226242;226243;226244;226245;226246;226247;226248;226249;226250;226251;226252;226253;226254	304778;304779;304780;304781;304782;304783;304784;304785;304786;304787;304788;304789;304790;304791;304792;304793;304794;304795;304796;304797;304798;304799;304800;304801;304802;304803;304804;304805;304806;304807;304808	304794			31	
MLMMMALLVPLVYTIK	1	2 Oxidation (M)	1898.0153	0.01532776	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	3	3	99.369	90.739	2;3	7.3911E-24	50935	160513_QHF_FH_JSI11Kac_6	152.14	139.58			1.0427	1.0103	36.443	10	3	Median	1.3256	1.1223	26.436	2	1	Median	0.70692	0.8269	39.172	2	0	Median	0.99589	0.9358	27.01	3	0	Median	1.2571	1.3438	60.51	3	2	Median	1208200000	548420000	659820000	254090000	82943000	171140000	245110000	131770000	113340000	439200000	204990000	234210000	269840000	128720000	141120000	36818	905	34725	226255;226256;226257;226258;226259;226260;226261;226262;226263;226264	304809;304810;304811;304812;304813;304814;304815;304816;304817;304818;304819;304820;304821;304822	304809		483;484;485;486	13	
MLMMMALLVPLVYTIK	1	Oxidation (M)	1882.0204	0.020413137	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	2.71			1						21	3	4	6	9	100.96	92.778	2;3	4.1466E-42	52764	160513_QHF_FH_JSI11Kac_6	180.2	156.35			0.63786	0.68008	82.768	18	15	Median	1.2593	1.0981	21.575	3	1	Median	0.43504	0.51	93.058	4	4	Median	1.4314	1.3907	106.52	3	3	Plateau	0.57619	0.61125	87.672	8	7	Median	1416300000	769050000	647260000	272970000	129880000	143090000	469650000	304940000	164710000	279500000	51343000	228160000	394190000	282890000	111300000	36819	905	34725	226265;226266;226267;226268;226269;226270;226271;226272;226273;226274;226275;226276;226277;226278;226279;226280;226281;226282;226283;226284;226285;226286	304823;304824;304825;304826;304827;304828;304829;304830;304831;304832;304833;304834;304835;304836;304837;304838;304839;304840;304841;304842;304843;304844;304845	304828		483;484;485;486	23	
MLMMMALLVPLVYTIKR	1	Unmodified	2022.1266	0.12660954	905	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			100.35	93.474	3	5.2148E-06	55603	160513_QHF_FH_JSI10Kac_6	149	139.44			0.33829	0.29142	150.28	3	3	Median	0.33829	0.29142	NaN	1	1	Median	0.2886	0.34715	212.05	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	489500000	349920000	139570000	45033000	26379000	18654000	444460000	323540000	120920000	0	0	0	0	0	0	36820	905	34726	226287;226288;226289	304846;304847;304848	304847			3	
MLMPHSK	1	Unmodified	842.41427	0.41426502	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							4	2	3	2	13.497	13.073	2;3	0.0082581	9899	160511_QHF_FH_JSI12i_3	84.244	67.317			1.2276	1.1826	44.424	10	6	Median	1.8495	1.4904	44.683	4	4	Median	0.33354	0.40779	NaN	1	1	Median	1.2295	1.2011	7.2168	3	1	Median	0.95457	0.98039	13.431	2	0	Median	2128800000	1014500000	1114300000	407710000	158830000	248880000	32610000	21747000	10863000	848600000	437130000	411470000	839900000	396770000	443130000	36821	3723	34727	226290;226291;226292;226293;226294;226295;226296;226297;226298;226299;226300	304849;304850;304851;304852;304853;304854;304855;304856;304857;304858;304859	304859			11	
MLMPHSKADTK	2	Acetyl (K)	1299.6315	0.63152802	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		34.623	25.256	3	0.015217	14177	160513_QHF_FH_JSI11Kac_6	35.268	19.729			0.6088	0.5927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6088	0.5927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8238600	5414800	2823800	0	0	0	0	0	0	8238600	5414800	2823800	0	0	0	36822	3723	34728	226301	304860	304860	2919		1	
MLMYQHQR	0	Unmodified	1105.5161	0.51610433	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS				3	0			3							3				16.748	15.635	2;3	0.00087133	12475	160511_QHF_FH_JSI9i_3	63.21	49.003			1.1205	0.92965	NaN	1	1	Median	1.1205	0.92965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45823000	22336000	23487000	45823000	22336000	23487000	0	0	0	0	0	0	0	0	0	36823	5108	34729	226302;226303;226304	304861;304862;304863	304863			3	
MLNFNVPHIK	1	Unmodified	1211.6485	0.64849871	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	63.105	62.282	3	7.9668E-05	55106	160511_QHF_FH_JSI11i_3	77.662	71.661			0.97247	0.94332	18.838	4	0	Median	1.5704	1.2918	NaN	1	0	Median	0.79236	0.87162	NaN	1	0	Median	0.92893	0.86334	NaN	1	0	Median	1.0181	1.0209	NaN	1	0	Median	242270000	119380000	122890000	28792000	12384000	16408000	29919000	17233000	12686000	77846000	38520000	39326000	105710000	51243000	54469000	36824	3785	34730	226305;226306;226307;226308;226309;226310	304864;304865;304866;304867	304864			4	
MLNGLEDSIGLSK	1	Unmodified	1375.7017	0.70171607	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							2	1		1	67.584	66.455	2	7.6811E-06	58910	160511_QHF_FH_JSI10i_2	129.84	119.88			2.8063	2.9088	75.67	4	4	Median	2.0699	1.7522	33.074	2	2	Median	3.068	3.8219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7.1392	8.063	NaN	1	1	Median	409550000	128950000	280590000	152470000	56706000	95766000	103200000	38810000	64395000	0	0	0	153870000	33437000	120430000	36825	1544	34731	226311;226312;226313;226314	304868;304869;304870;304871;304872	304872			5	
MLNHVLNICEK	1	Unmodified	1369.6846	0.68462622	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	43.482	43.389	2;3	1.825E-05	38348	160511_QHF_FH_JSI11i_3	105.98	95.452			1.1133	1.0491	134.85	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1133	1.0491	113.81	2	2	Median	0.92343	0.91709	203.52	2	2	Median	371000000	140150000	230850000	0	0	0	0	0	0	141760000	39907000	101850000	229240000	100240000	129000000	36826	4614	34732	226315;226316;226317;226318;226319	304873;304874;304875;304876;304877	304875			5	
MLNIHPSLLPSFK	1	Oxidation (M)	1511.817	0.8170206	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.923	75.138	3	0.00032217	67030	160511_QHF_FH_JSI11i_3	65.092	60.201			0.96965	0.91446	7.959	4	0	Median	1.1529	0.94764	NaN	1	0	Median	0.7313	0.83882	NaN	1	0	Median	0.94243	0.88244	NaN	1	0	Median	0.99766	1.0056	NaN	1	0	Median	496450000	219490000	276960000	140060000	54096000	85959000	112070000	62373000	49700000	104900000	41884000	63013000	139420000	61137000	78287000	36827	1205	34733	226320;226321;226322;226323	304878;304879;304880;304881;304882;304883;304884;304885;304886;304887	304880		828	10	
MLNIHPSLLPSFK	1	Unmodified	1495.8221	0.82210598	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	4	3	3	3	80.918	78.967	2;3	1.9708E-07	69866	160511_QHF_FH_JSI12i_3	107.65	103.1			1.0245	1.0283	23.016	13	4	Median	1.321	1.0741	22.849	4	1	Median	0.88535	1.0143	19.305	3	0	Median	1.0486	1.0283	7.8765	3	1	Median	0.94272	0.94076	42.763	3	2	Median	4879000000	2199800000	2679200000	891940000	358450000	533490000	823250000	456420000	366830000	1366000000	683790000	682160000	1797800000	701100000	1096700000	36828	1205	34733	226324;226325;226326;226327;226328;226329;226330;226331;226332;226333;226334;226335;226336	304888;304889;304890;304891;304892;304893;304894;304895;304896;304897;304898;304899;304900;304901;304902;304903;304904;304905;304906;304907;304908;304909;304910	304908			23	
MLNINKK	2	Unmodified	859.49496	0.49495818	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			4							2		1	1	14.192	13.537	2	0.011469	10685	160511_QHF_FH_JSI9i_3	92.692	71.146			0.76578	0.62743	55.047	2	2	Median	0.76578	0.62743	55.047	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195050000	131740000	63304000	149250000	85951000	63304000	0	0	0	45793000	45793000	0	0	0	0	36829	1117	34734	226337;226338;226339;226340	304911;304912;304913;304914;304915	304913			5	
MLNINKK	2	Acetyl (K)	901.50552	0.50552287	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	1	0	0	1	By MS/MS				15	0								1		1				41.041	31.06	2	0.029008	17155	160513_QHF_FH_JSI9Kac_5	81.635	44.614			0.029882	0.024795	NaN	1	1	Median	0.029882	0.024795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2994600	2907500	87041	2994600	2907500	87041	0	0	0	0	0	0	0	0	0	36830	1117	34734	226341	304916	304916			1	
MLNINKK	2	Acetyl (K);Oxidation (M)	917.50044	0.50043749	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	1	0	1	1				By MS/MS	14	0							1						1	33.498	24.612	2	0.056993	14919	160513_QHF_FH_JSI12Kac_4	60.294	34.844			1.1309	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1309	1.2543	NaN	1	0	Median	11512000	4278500	7233100	0	0	0	0	0	0	0	0	0	11512000	4278500	7233100	36831	1117	34734	226342	304917	304917			0	
MLNSNTESPYLIWNNSTR	0	Unmodified	2139.0055	0.0055026685	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.038	74.033	2	6.0015E-11	65872	160511_QHF_FH_JSI10i_2	192.18	154.75			0.72684	0.75326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72684	0.75326	NaN	1	1	Median	12939000	11003000	1936700	0	0	0	7156000	7156000	0	0	0	0	5783400	3846600	1936700	36832	486	34735	226343;226344;226345	304918;304919;304920	304920			3	
MLNTLQTNAGYLEQVK	1	Unmodified	1821.9295	0.92948418	2235	Q05932	FPGS	Folylpolyglutamate synthase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	68.1	67.513	2	1.5164E-21	57950	160511_QHF_FH_JSI12i_2	131.13	98.184			0.68409	0.67205	64.349	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68409	0.67205	64.349	2	2	Median	NaN	NaN	NaN	0	0	Median	25867000	14421000	11446000	0	0	0	0	0	0	25867000	14421000	11446000	0	0	0	36833	2235	34736	226346;226347;226348;226349	304921;304922;304923;304924	304921			4	
MLNTNYHLPPSPK	1	Unmodified	1510.7602	0.76023401	799	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		2	2										4	46.451	45.634	3	0.0031107	38304	160511_QHF_FH_JSI12i_3	53.403	47.508			0.51442	0.5689	21.262	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51442	0.5689	21.262	4	4	Median	190690000	127870000	62817000	0	0	0	0	0	0	0	0	0	190690000	127870000	62817000	36834	799	34737	226350;226351;226352;226353	304925;304926;304927;304928	304927			4	
MLPDVLK	1	Unmodified	814.46226	0.46226107	4782	Q9H8G2	CAAP1	Caspase activity and apoptosis inhibitor 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.099	54.732	2	0.020299	46872	160511_QHF_FH_JSI12i_2	60.788	45.349			1.965	2.1311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.965	2.1311	NaN	1	1	Median	24824000	8378800	16445000	0	0	0	0	0	0	0	0	0	24824000	8378800	16445000	36835	4782	34738	226354	304929	304929			1	
MLPEIDQNK	1	Unmodified	1086.5379	0.53794521	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	1	2	4	40.116	39.2	2	0.00097524	35706	160511_QHF_FH_JSI12i_1	82.452	77.105			1.1795	1.104	83.38	10	8	Median	0.81878	0.68027	91.228	3	2	Plateau	0.32717	0.4003	NaN	1	1	Median	0.98561	0.96794	94.312	2	1	Median	0.98316	1.0404	75.781	4	4	Median	762270000	388010000	374260000	156120000	63394000	92726000	32831000	23669000	9162500	258180000	143900000	114290000	315140000	157050000	158090000	36836	2084	34739	226355;226356;226357;226358;226359;226360;226361;226362;226363;226364	304930;304931;304932;304933;304934;304935;304936;304937;304938;304939;304940	304935			11	
MLPEVLYR	0	Unmodified	1019.5474	0.54738768	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	61.442	60.531	2	0.009583	53194	160511_QHF_FH_JSI9i_2	55.902	35.347			1.247	1.2301	13.861	4	0	Linear	1.8906	1.6007	NaN	1	0	Median	1.1163	1.3924	NaN	1	0	Median	1.1512	1.1612	NaN	1	0	Median	1.3507	1.4995	NaN	1	0	Median	345350000	150150000	195200000	50809000	16908000	33901000	95086000	44668000	50418000	115030000	60301000	54727000	84425000	28273000	56152000	36837	4803	34740	226365;226366;226367;226368	304941;304942	304942			2	
MLPLIWSK	1	Unmodified	986.56231	0.56230947	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							3	2	2	1	82.385	81.593	2	0.0095908	72740	160511_QHF_FH_JSI11i_3	64.265	33.546			0.57902	0.47788	95.541	8	8	Median	0.62089	0.5124	124.71	3	3	Median	0.37564	0.44161	99.594	2	2	Median	0.77436	0.73112	114.8	2	2	Median	0.41175	0.44254	NaN	1	1	Median	358610000	179840000	178770000	100520000	40725000	59796000	104780000	58271000	46506000	113150000	61013000	52139000	40155000	19827000	20328000	36838	2605	34741	226369;226370;226371;226372;226373;226374;226375;226376	304943;304944;304945;304946;304947;304948;304949;304950	304944			8	
MLPLSIKDDEYKPPK	3	Acetyl (Protein N-term)	1814.9488	0.94882264	3642	Q8NEW0	SLC30A7	Zinc transporter 7	yes	yes	0	1	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.346	72.474	3	0.00013002	64363	160511_QHF_FH_JSI10i_2	73.887	67.306			0.82538	0.90833	124.19	4	1	Median	0.10466	0.092814	NaN	1	1	Median	0.65093	0.79115	NaN	1	0	Median	1.0466	1.0429	NaN	1	0	Median	1.3441	1.4412	NaN	1	0	Median	156250000	86885000	69366000	15666000	14947000	719370	37287000	22786000	14501000	60895000	30925000	29970000	42402000	18226000	24176000	36839	3642	34742	226377;226378;226379;226380	304951;304952;304953;304954;304955;304956	304956			6	
MLPLSLLK	1	Unmodified	913.56706	0.56706049	5643	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	2	2	83.66	82.957	2	0.0014792	71909	160511_QHF_FH_JSI12i_2	88.942	88.942			1.1207	1.0708	23.788	8	1	Median	1.5194	1.2807	30.038	2	1	Median	0.78957	0.92354	25.644	2	0	Median	1.2089	1.1551	16.22	2	0	Median	1.0287	1.0932	31.897	2	0	Median	635820000	301360000	334450000	120620000	52846000	67775000	137060000	69078000	67981000	203020000	94164000	108860000	175110000	85274000	89839000	36840	5643	34743	226381;226382;226383;226384;226385;226386;226387;226388;226389	304957;304958;304959;304960;304961;304962;304963;304964;304965;304966;304967;304968;304969;304970;304971;304972;304973;304974;304975;304976;304977;304978;304979;304980;304981;304982;304983	304962			27	
MLPLSLLK	1	Acetyl (Protein N-term)	955.57763	0.57762518	5643	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	yes	yes	0	1	0	0	By matching		By MS/MS		1	0	2									1		1		102.89	102.79	2	0.0049637	93559	160511_QHF_FH_JSI11i_1	41.429	28.998			1.0681	0.93761	59.549	2	0	Median	0.76363	0.61539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.494	1.4285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33932000	16284000	17648000	12498000	6898600	5599600	0	0	0	21434000	9385700	12048000	0	0	0	36841	5643	34743	226390;226391	304984	304984			1	
MLPPPPMWR	0	Unmodified	1123.5671	0.56707727	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	68.45	67.683	2	1.8524E-05	58394	160511_QHF_FH_JSI12i_2	107.66	81.056			0.96829	0.8838	15.718	7	2	Median	1.225	1.0315	29.246	2	1	Median	0.73101	0.8838	NaN	1	0	Median	0.92325	0.90331	12.892	2	0	Median	0.90076	0.95644	14.876	2	1	Median	1447900000	718670000	729190000	242360000	120740000	121620000	229120000	127770000	101360000	513940000	238570000	275370000	462440000	231600000	230840000	36842	2650	34744	226392;226393;226394;226395;226396;226397;226398	304985;304986;304987;304988;304989;304990;304991;304992;304993;304994;304995;304996;304997	304988			13	
MLPRDER	0	Unmodified	915.45964	0.45963531	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			9.8782	9.3252	2	0.0096987	6821	160511_QHF_FH_JSI9i_3	116.3	93.37			1.2511	1.0002	24.506	3	0	Plateau	1.0325	0.84358	24.081	2	0	Median	0.95042	1.1447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	330440000	162780000	167660000	267290000	130860000	136430000	63144000	31919000	31225000	0	0	0	0	0	0	36843	2652	34745	226399;226400;226401;226402	304998;304999;305000	304999			3	
MLPSTSR	0	Unmodified	790.40072	0.40072345	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.24		2	1					4	1	1	1	3	3	18.896	12.866	2	0.012699	12108	160511_QHF_FH_JSI11i_3	73.039	54.66			1.1875	1.2205	31.022	8	3	Median	1.4432	1.2275	NaN	1	0	Median	0.86901	1.0228	NaN	1	0	Median	1.2919	1.259	40.705	3	1	Median	1.0915	1.2134	32.997	3	2	Median	581850000	264770000	317070000	6670800	2967500	3703200	2878800	1532200	1346600	178300000	65833000	112470000	393990000	194440000	199560000	36844	313	34746	226403;226404;226405;226406;226407;226408;226409;226410	305001;305002;305003;305004;305005;305006	305001			6	
MLPTFVR	0	Unmodified	862.47349	0.47349446	1785;1155	P52789;P52790;Q2TB90;P19367	HK2;HK3;HKDC1;HK1	Hexokinase-2;Hexokinase-3;Putative hexokinase HKDC1;Hexokinase-1	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.599	54.647	2	0.007086	47201	160511_QHF_FH_JSI11i_2	88.734	19.345			0.85386	0.80029	17.286	4	0	Linear	1.3013	1.1019	NaN	1	0	Median	0.66898	0.82304	NaN	1	0	Median	0.76596	0.78258	NaN	1	0	Median	0.95185	1.056	NaN	1	0	Median	467010000	252290000	214720000	92084000	48872000	43212000	134270000	80993000	53276000	136220000	71023000	65199000	104440000	51400000	53038000	36845	1785;1155	34747	226411;226412;226413;226414	305007;305008;305009;305010	305010			4	
MLPTIIADNAGYDSADLVAQLR	0	Unmodified	2346.1889	0.18894634	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	4	4								2	2	1	3	101.33	101.23	2;3	8.5639E-142	89053	160511_QHF_FH_JSI9i_2	358.13	343.78			1.0255	0.99554	15.339	8	1	Median	1.092	0.92145	9.0422	2	0	Median	1.0305	1.2476	16.559	2	0	Median	1.0265	0.99905	NaN	1	0	Median	0.88988	0.99204	12.853	3	1	Median	3172900000	1516600000	1656300000	1213900000	562110000	651790000	740660000	369050000	371610000	74486000	37492000	36994000	1143900000	547970000	595920000	36846	2090	34748	226415;226416;226417;226418;226419;226420;226421;226422	305011;305012;305013;305014	305014			4	
MLPTIIADNAGYDSADLVAQLR	0	Oxidation (M)	2362.1839	0.18386096	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS			2	0		2								1	1			100.88	100.8	3	4.6305E-13	88609	160511_QHF_FH_JSI9i_2	107.45	100			1.0547	0.92098	NaN	1	0	Median	1.0547	0.92098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42113000	17488000	24625000	42113000	17488000	24625000	0	0	0	0	0	0	0	0	0	36847	2090	34748	226423;226424	305015;305016	305015		1753	1	
MLPTLGGEEGVSR	0	Unmodified	1344.6708	0.6707503	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	53.502	52.56	2	6.2647E-05	44937	160511_QHF_FH_JSI12i_2	106.29	87.511			0.96596	1.0348	12.843	4	1	Median	1.3615	1.1516	NaN	1	0	Median	0.76742	0.94658	NaN	1	0	Median	0.94986	0.8903	NaN	1	1	Median	0.98234	1.1313	NaN	1	0	Median	212230000	96927000	115310000	49627000	19953000	29674000	46489000	26036000	20453000	49679000	18841000	30838000	66438000	32096000	34342000	36848	5674	34749	226425;226426;226427;226428	305017;305018;305019	305018			3	
MLPVDEFLPVMFDK	1	Unmodified	1679.8303	0.83028741	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.41	102.31	2	3.4886E-06	90888	160511_QHF_FH_JSI10i_2	126.71	112.25			1.4204	1.4841	2.6964	4	1	Median	1.6883	1.4332	NaN	1	0	Median	1.1924	1.4717	NaN	1	1	Median	1.5073	1.5275	NaN	1	0	Median	1.3385	1.4966	NaN	1	0	Median	924150000	345940000	578210000	165790000	52033000	113760000	208190000	79783000	128410000	270410000	85666000	184740000	279770000	128460000	151300000	36849	3593	34750	226429;226430;226431;226432	305020;305021;305022;305023	305023			3	
MLQADPNK	1	Unmodified	915.4484	0.44840192	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.826	12.403	2	7.6752E-05	10205	160511_QHF_FH_JSI12i_1	132.57	85.5			0.68099	0.68722	32.848	4	1	Median	0.71441	0.58481	NaN	1	0	Median	0.64914	0.7706	NaN	1	0	Median	1.2162	1.1999	NaN	1	1	Median	0.57855	0.61287	NaN	1	0	Median	1750400000	922340000	828100000	449930000	201410000	248510000	464000000	291770000	172220000	405180000	174720000	230450000	431340000	254430000	176910000	36850	5596	34751	226433;226434;226435;226436	305024;305025;305026;305027	305025			4	
MLQCGYSVVFGSR	0	Unmodified	1502.701	0.70100457	3020	Q687X5	STEAP4	Metalloreductase STEAP4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4		2	2	1	70.218	62.703	2	3.5333E-27	34580	160513_QHF_FH_JSI10Kac_6	201.6	152.18			0.69355	0.70904	67.406	4	4	Median	NaN	NaN	NaN	0	0	Median	0.26818	0.31935	NaN	1	1	Median	1.0056	0.97252	70.315	2	2	Median	0.76762	0.84991	NaN	1	1	Median	125470000	68293000	57178000	0	0	0	48809000	27362000	21447000	62604000	31953000	30651000	14059000	8978400	5080200	36851	3020	34752	226437;226438;226439;226440;226441	305028;305029;305030;305031;305032	305032			5	
MLQEDELRDAVLLVFANK	1	Unmodified	2103.1034	0.1034258	2126	P84085	ARF5	ADP-ribosylation factor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.89	6.85	1	1	2						5	2	1	3	3	98.259	93.5	3	1.3954E-41	88437	160511_QHF_FH_JSI12i_3	206.74	152.75			0.95364	0.96998	22.91	9	2	Median	1.2836	1.0777	13.201	2	2	Median	0.76085	0.90578	NaN	1	0	Median	1.2346	1.2671	22.998	3	0	Plateau	0.80796	0.83921	22.725	3	0	Plateau	2835300000	1358200000	1477100000	344600000	153920000	190670000	326740000	184370000	142370000	1203800000	570470000	633350000	960120000	449440000	510680000	36852	2126	34753	226442;226443;226444;226445;226446;226447;226448;226449;226450	305033;305034;305035;305036;305037;305038;305039;305040;305041	305036			9	
MLQGLANGPQCAHYCFSLLK	1	Unmodified	2307.0962	0.096248706	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.062	79.062	3	0.0045802	70621	160511_QHF_FH_JSI11i_3	41.711	25.027			0.5743	0.5469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5743	0.5469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17908000	13255000	4653100	0	0	0	0	0	0	17908000	13255000	4653100	0	0	0	36853	3862	34754	226451	305042	305042			1	
MLQHAASNK	1	Unmodified	998.49675	0.4967491	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	6.08		8	9					1	6	5	7	7	5	5.3079	2.8703	2;3	2.0608E-16	2653	160511_QHF_FH_JSI9i_2	184.49	119.72			1.0158	0.88578	68.663	24	7	Median	0.99739	0.83295	9.6718	5	0	Median	0.66664	0.80097	89	7	3	Median	1.1238	1.0604	58.343	7	2	Median	1.078	1.0996	96.982	5	2	Median	16272000000	8252100000	8019800000	1699800000	768940000	930860000	2629800000	1416600000	1213200000	6686900000	3135000000	3552000000	5255400000	2931600000	2323800000	36854	1600	34755	226452;226453;226454;226455;226456;226457;226458;226459;226460;226461;226462;226463;226464;226465;226466;226467;226468;226469;226470;226471;226472;226473;226474;226475	305043;305044;305045;305046;305047;305048;305049;305050;305051;305052;305053;305054;305055;305056;305057;305058;305059;305060;305061;305062;305063;305064;305065;305066;305067;305068;305069;305070;305071;305072;305073;305074	305056			32	
MLQHAASNK	1	Oxidation (M)	1014.4917	0.49166372	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		2	6							1	2		5	3.8651	3.7096	2;3	3.8852E-06	2554	160511_QHF_FH_JSI12i_3	125.98	104.71			1.0674	1.0357	66.267	6	2	Median	1.2819	1.1162	NaN	1	1	Median	0.55494	0.61308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.11	1.1664	76.486	4	1	Median	561450000	220130000	341320000	41905000	16145000	25760000	30276000	13439000	16837000	0	0	0	489270000	190550000	298720000	36855	1600	34755	226476;226477;226478;226479;226480;226481;226482;226483	305075;305076;305077;305078;305079;305080;305081;305082	305080		1277	8	
MLQHIDYR	0	Unmodified	1074.528	0.52804923	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.19		10	9						8	5	7	9	6	26.903	23.631	2;3	0.00012464	19606	160511_QHF_FH_JSI11i_2	140.09	116.13			1.1421	1.1729	58.156	24	17	Median	1.1201	0.92591	59.133	3	1	Median	1.1047	1.3345	70.276	6	5	Median	1.1347	1.0768	64.167	9	8	Median	1.2343	1.3733	50.15	6	3	Median	6720500000	3089900000	3630600000	654240000	193370000	460870000	1521700000	790360000	731300000	3462600000	1573500000	1889100000	1082000000	532690000	549270000	36856	1059	34756	226484;226485;226486;226487;226488;226489;226490;226491;226492;226493;226494;226495;226496;226497;226498;226499;226500;226501;226502;226503;226504;226505;226506;226507;226508;226509;226510	305083;305084;305085;305086;305087;305088;305089;305090;305091;305092;305093;305094;305095;305096;305097;305098;305099;305100;305101;305102;305103;305104;305105;305106;305107;305108;305109;305110;305111;305112;305113	305101			31	
MLQHIDYR	0	Oxidation (M)	1090.523	0.52296385	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	1	0			By MS/MS		2	0		1										1		23.99	23.645	3	0.046192	19679	160511_QHF_FH_JSI11i_2	31.422	21.834			5.9849	6.0392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.9849	6.0392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69723000	10959000	58764000	0	0	0	0	0	0	69723000	10959000	58764000	0	0	0	36857	1059	34756	226511	305114	305114			1	
MLQHYLQNK	1	Unmodified	1173.5965	0.59646314	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							4	2	1	2	21.943	21.305	2;3	1.8472E-07	17422	160511_QHF_FH_JSI9i_3	121.52	68.35			0.27826	0.26105	301.15	3	3	Median	1.0921	0.89085	413.93	2	2	Median	NaN	NaN	NaN	0	0	Median	0.27826	0.26105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102560000	50118000	52444000	45885000	17556000	28328000	12717000	0	12717000	16836000	13394000	3442100	27124000	19168000	7956300	36858	2925	34757	226512;226513;226514;226515;226516;226517;226518;226519;226520	305115;305116;305117;305118;305119;305120;305121;305122;305123	305121			9	
MLQIPNR	0	Unmodified	870.47456	0.47455709	4969	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.308	33.897	2	0.015517	28873	160511_QHF_FH_JSI11i_2	56.89	26.222			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36859	4969	34758	226521	305124	305124			1	
MLQMLVLPLIISSLVTGMAALDSK	1	Unmodified	2543.4141	0.4140606	1551	P43003	SLC1A3	Excitatory amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		106.7	98.298	3	2.0317E-27	55541	160513_QHF_FH_JSI11Kac_6	144.22	137.42			2.0848	1.9066	174.36	4	3	Median	0.91107	0.78193	186.44	2	2	Median	11.63	13.694	NaN	1	1	Median	1.275	1.2439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	311340000	62277000	249070000	51057000	27143000	23914000	228520000	17937000	210580000	31767000	17197000	14570000	0	0	0	36860	1551	34759	226522;226523;226524;226525	305125;305126;305127;305128;305129	305126			5	
MLQMLVLPLIISSLVTGMAALDSK	1	Oxidation (M)	2559.409	0.40897522	1551	P43003	SLC1A3	Excitatory amino acid transporter 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			106.32	100.6	3	0.00034936	59645	160513_QHF_FH_JSI10Kac_6	73.11	60.182			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32559000	32559000	0	0	0	0	32559000	32559000	0	0	0	0	0	0	0	36861	1551	34759	226526	305130	305130		1222	1	
MLQPCGPPADKPEEN	1	Unmodified	1681.744	0.74399159	4502	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.406	32.802	2	0.00056269	29672	160511_QHF_FH_JSI12i_1	112.13	94.689			0.6308	1.2339	45.015	4	2	Linear	1.9866	1.616	NaN	1	1	Median	1.5001	1.7572	NaN	1	1	Median	0.72303	0.68188	NaN	1	0	Median	0.87989	0.94222	NaN	1	0	Median	189360000	79229000	110130000	35342000	10314000	25028000	47397000	14901000	32496000	66444000	31017000	35427000	40172000	22997000	17174000	36862	4502	34760	226527;226528;226529;226530	305131;305132;305133;305134;305135	305133			5	
MLQPSSSPLWGK	1	Unmodified	1329.6751	0.67510739	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	59.673	58.76	2	4.4605E-06	50386	160511_QHF_FH_JSI12i_2	123.63	113.1			0.91889	0.97698	2.6385	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9385	0.95892	NaN	1	0	Median	0.8997	0.99538	NaN	1	0	Median	265270000	134490000	130780000	0	0	0	0	0	0	163110000	89375000	73737000	102150000	45111000	57042000	36863	5603	34761	226531;226532;226533;226534;226535	305136;305137;305138;305139;305140;305141;305142	305136			7	
MLQQDSNDDTEDVSLFDAEEETTNRPR	0	Oxidation (M)	3170.3582	0.35820911	5139	Q9NYZ1;Q96ET8	TVP23B;TVP23C	Golgi apparatus membrane protein TVP23 homolog B;Golgi apparatus membrane protein TVP23 homolog C	yes	no	0	0	1	1			By MS/MS		1	0	1											1		82.256	81.899	3	0.0036614	74614	160511_QHF_FH_JSI11i_1	38.874	31.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36864	5139	34762	226536	305143	305143		2585	1	
MLQQDSNDDTEDVSLFDAEEETTNRPR	0	Acetyl (Protein N-term)	3196.3739	0.37385917	5139	Q9NYZ1;Q96ET8	TVP23B;TVP23C	Golgi apparatus membrane protein TVP23 homolog B;Golgi apparatus membrane protein TVP23 homolog C	yes	no	0	1	0	1				By MS/MS	1	0	1												1	82.434	81.922	3	0.0024235	74628	160511_QHF_FH_JSI12i_1	35.32	33.413			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36865	5139	34762	226537	305144	305144			1	
MLQQVPENINFPAEEEK	1	Acetyl (Protein N-term)	2056.9776	0.97755658	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	93.585	93.156	2;3	1.1281E-06	84696	160511_QHF_FH_JSI12i_1	73.36	59.102			1.0686	1.0286	2.6671	7	0	Median	1.2217	0.99831	0.20639	2	0	Median	0.86904	1.0152	NaN	1	0	Median	1.1059	1.0514	3.0908	2	0	Median	1.0055	1.0401	1.2182	2	0	Median	591420000	293120000	298300000	176890000	80082000	96807000	57202000	36264000	20939000	169060000	83164000	85900000	188270000	93612000	94656000	36866	1520	34763	226538;226539;226540;226541;226542;226543;226544	305145;305146;305147;305148;305149;305150;305151;305152;305153;305154	305148			10	
MLQQVPENINFPAEEEK	1	Unmodified	2014.967	0.9669919	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		69.147	68.455	2	3.8348E-07	60825	160511_QHF_FH_JSI9i_1	94.122	79.864			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36867	1520	34763	226545;226546	305155;305156	305156			2	
MLQQVPENINFPAEEEK	1	Acetyl (Protein N-term);Oxidation (M)	2072.9725	0.97247121	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	1	1	0	By MS/MS				1	0	1									1				80.876	80.022	2	0.013539	71180	160511_QHF_FH_JSI9i_1	37.426	25.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36868	1520	34763	226547	305157	305157		1199	1	
MLQSIIK	1	Unmodified	831.48881	0.48881017	1877	P56378	MP68	6.8 kDa mitochondrial proteolipid	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							2	2	3	2	40.636	39.762	2	0.0081881	34776	160511_QHF_FH_JSI9i_2	86.866	14.845			4.1596	4.1998	134.18	9	9	Median	4.992	4.193	23.155	2	2	Median	6.6937	8.0615	76.025	2	2	Median	0.94899	0.9238	173.93	3	3	Median	3.7959	4.0268	40.549	2	2	Median	1273600000	481220000	792360000	230570000	52378000	178190000	210560000	50938000	159620000	632390000	333160000	299230000	200050000	44735000	155310000	36869	1877	34764	226548;226549;226550;226551;226552;226553;226554;226555;226556	305158;305159;305160;305161;305162;305163;305164;305165;305166;305167	305163			10	
MLQTLYDYFWWER	0	Unmodified	1849.8498	0.84977729	4082	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	95.198	87.33	2	3.9486E-78	48839	160513_QHF_FH_JSI9Kac_6	245.21	203.21			1.1615	1.2271	114.76	5	4	Median	0.21886	0.18372	NaN	1	0	Median	0.91535	1.0982	132.18	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5647	1.6531	42.149	2	2	Median	1688000000	908130000	779830000	171820000	144190000	27625000	979490000	537670000	441810000	0	0	0	536650000	226260000	310390000	36870	4082	34765	226557;226558;226559;226560;226561	305168;305169;305170;305171;305172	305168			5	
MLQTLYDYFWWER	0	Oxidation (M)	1865.8447	0.84469192	4082	Q96G23	CERS2	Ceramide synthase 2	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			93.116	87.396	2	3.3813E-06	50116	160513_QHF_FH_JSI10Kac_6	126.1	80.222			0.64067	0.75547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64067	0.75547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62445000	38838000	23606000	0	0	0	62445000	38838000	23606000	0	0	0	0	0	0	36871	4082	34765	226562	305173	305173		2386	1	
MLQVASQASR	0	Unmodified	1089.5601	0.56007764	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.06	1	7	1				2	3		4	4	4	2	24.486	21.168	2	6.5291E-07	18526	160511_QHF_FH_JSI10i_2	120.31	74.971			0.63261	0.52931	118.4	13	13	Median	1.1287	0.94783	125.58	4	4	Median	0.31715	0.38352	156.8	3	3	Median	1.0629	1.0658	103.81	4	4	Median	0.19893	0.21271	7.0973	2	2	Median	1090500000	565980000	524560000	219380000	105170000	114210000	343880000	179720000	164160000	373860000	174990000	198860000	153420000	106100000	47326000	36872	3949	34766	226563;226564;226565;226566;226567;226568;226569;226570;226571;226572;226573;226574;226575;226576	305174;305175;305176;305177;305178;305179;305180;305181;305182;305183;305184;305185;305186;305187	305186			14	
MLQWLATK	1	Unmodified	989.53682	0.536823	4079	Q96FZ2	HMCES	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	60.836	60.15	2	0.01617	51700	160511_QHF_FH_JSI12i_2	48.283	17.779			0.052559	0.056864	114.88	2	2	Median	NaN	NaN	NaN	0	0	Median	0.10855	0.12812	NaN	1	1	Median	0.025449	0.025238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46434000	44062000	2372000	0	0	0	17012000	15932000	1080300	29422000	28131000	1291700	0	0	0	36873	4079	34767	226577;226578;226579	305188;305189;305190	305188			3	
MLQYCLQGLFHPAR	0	Unmodified	1732.8542	0.85415117	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.949	73.201	3	7.0852E-05	40000	160513_QHF_FH_JSI10Kac_6	118.37	107.42			0.77852	0.9188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77852	0.9188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134020000	69683000	64335000	0	0	0	134020000	69683000	64335000	0	0	0	0	0	0	36874	542	34768	226580	305191	305191			1	
MLSALLTGVNR	0	Unmodified	1173.654	0.65397802	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			65.436	63.939	2	0.010327	53639	160511_QHF_FH_JSI10i_3	47.187	32.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36875	2213	34769	226581;226582	305192;305193	305192			2	
MLSCAGADR	0	Unmodified	979.42154	0.42153524	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	4.18	4	3					1			2	2	3	1	12.899	11.573	2	1.9954E-05	9610	160511_QHF_FH_JSI10i_2	107.01	78.495			1.1465	1.3807	32.255	8	0	Median	2.0749	1.7355	5.5584	2	0	Median	1.1465	1.3807	19.961	2	0	Median	0.92638	0.92114	5.2921	3	0	Median	1.8998	1.9888	NaN	1	0	Median	2261600000	1074100000	1187500000	255320000	91751000	163570000	629470000	263000000	366470000	1135600000	622280000	513320000	241180000	97046000	144140000	36876	1292	34770	226583;226584;226585;226586;226587;226588;226589;226590	305194;305195;305196;305197;305198;305199;305200;305201;305202;305203;305204	305203			11	
MLSFWWPLALILATQR	0	Unmodified	1945.0648	0.064795869	4858	Q9HCJ1	ANKH	Progressive ankylosis protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			103.15	96.274	2;3	1.0427E-08	54422	160513_QHF_FH_JSI9Kac_6	119.01	96.817			0.8537	0.99828	12.718	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8537	0.99828	12.718	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	246280000	132250000	114030000	30812000	14696000	16116000	215460000	117550000	97914000	0	0	0	0	0	0	36877	4858	34771	226591;226592;226593	305205;305206;305207	305205			2	
MLSFWWPLALILATQR	0	Oxidation (M)	1961.0597	0.059710491	4858	Q9HCJ1	ANKH	Progressive ankylosis protein homolog	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			102.2	96.475	3	1.6125E-11	57039	160513_QHF_FH_JSI10Kac_6	127.57	110.08			0.58929	0.69828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58929	0.69828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37688000	23402000	14286000	0	0	0	37688000	23402000	14286000	0	0	0	0	0	0	36878	4858	34771	226594	305208	305208		2544	1	
MLSGIGAEGEAR	0	Unmodified	1189.5761	0.57612163	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.632	31.31	2	0.0033085	26505	160511_QHF_FH_JSI12i_2	66.55	50.076			0.77881	0.85645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77881	0.85645	NaN	1	1	Median	45726000	18452000	27274000	0	0	0	0	0	0	0	0	0	45726000	18452000	27274000	36879	2352	34772	226595	305209	305209			1	
MLSHSSGAVR	0	Unmodified	1043.5182	0.51821282	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			7.7511	7.2303	3	0.012043	5153	160511_QHF_FH_JSI10i_3	33.87	19.752			0.54574	0.6232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54574	0.6232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151220000	84054000	67163000	0	0	0	151220000	84054000	67163000	0	0	0	0	0	0	36880	4647	34773	226596	305210	305210			1	
MLSIFYFAIPVGSGLGYIAGSK	1	Unmodified	2290.2072	0.20716259	4683	Q9H2V7	SPNS1	Protein spinster homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	99.499	91.205	2;3	9.9464E-57	49661	160513_QHF_FH_JSI12Kac_6	182.1	153.12			1.1626	1.0251	48.534	7	3	Median	1.2537	1.0758	6.8345	2	0	Median	0.92731	1.1115	32.16	2	2	Median	2.3507	2.2357	NaN	1	1	Median	0.53912	0.5731	7.3642	2	0	Median	867120000	434310000	432810000	340140000	159900000	180240000	248340000	128520000	119820000	65034000	12382000	52652000	213610000	133510000	80098000	36881	4683	34774	226597;226598;226599;226600;226601;226602;226603;226604	305211;305212;305213;305214;305215;305216;305217;305218;305219;305220;305221	305219			10	
MLSLDFLDDVRR	0	Unmodified	1478.7551	0.75514863	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	4	2	2	89.364	88.785	3	1.9977E-23	79103	160511_QHF_FH_JSI11i_3	155.99	145.06			0.96512	0.98935	12.286	8	0	Median	1.2064	1.0184	NaN	1	0	Median	0.99686	1.1734	18.253	3	0	Median	0.98874	0.961	11.272	2	0	Median	0.87622	0.93618	3.7231	2	0	Median	396190000	210050000	186140000	53125000	27092000	26033000	112730000	61127000	51604000	139840000	75119000	64718000	90497000	46716000	43782000	36882	2067	34775	226605;226606;226607;226608;226609;226610;226611;226612;226613	305222;305223;305224;305225;305226;305227;305228;305229;305230;305231;305232;305233;305234;305235;305236;305237;305238	305223			17	
MLSLLVVDVGNPEEVR	0	Unmodified	1768.9393	0.93932058	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		97.919	97.703	2	0.00022348	85741	160511_QHF_FH_JSI11i_2	88.021	63.166			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5922500	5922500	0	0	0	0	0	0	0	5922500	5922500	0	0	0	0	36883	1892	34776	226614	305239	305239			1	
MLSLVLMHK	1	Unmodified	1070.598	0.59804305	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			6						10	4	5	4	3	67.293	61.389	2;3	2.0217E-06	33577	160513_QHF_FH_JSI10Kac_6	107.69	88.451			0.99715	1.0536	125.43	14	14	Median	1.1567	0.99723	153.74	4	4	Median	1.5807	1.857	119.8	4	4	Median	1.4474	1.3781	94.237	3	3	Median	0.52624	0.54149	166.79	3	3	Median	533110000	285710000	247400000	116140000	59009000	57132000	218660000	112920000	105750000	123230000	70316000	52911000	75083000	43472000	31610000	36884	1535	34777	226615;226616;226617;226618;226619;226620;226621;226622;226623;226624;226625;226626;226627;226628;226629;226630	305240;305241;305242;305243;305244;305245;305246;305247;305248;305249;305250;305251;305252;305253;305254;305255	305254			16	
MLSNKPQDFQIR	1	Unmodified	1475.7555	0.75548298	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	0.3		1	9							2	2	4	2	40.048	39.449	2;3	0.00033151	34739	160511_QHF_FH_JSI11i_3	129.89	98.395			1.5991	1.3415	94.873	10	9	Median	1.6032	1.3415	30.199	2	1	Median	0.96594	1.0996	98.362	2	2	Median	1.1289	1.0577	115.47	4	4	Median	0.80221	0.83014	167.4	2	2	Median	988220000	488430000	499790000	220570000	96375000	124200000	316570000	153370000	163200000	375310000	198010000	177300000	75770000	40669000	35101000	36885	5161	34778	226631;226632;226633;226634;226635;226636;226637;226638;226639;226640	305256;305257;305258;305259;305260;305261;305262;305263;305264;305265;305266	305259			11	
MLSQLAAAESR	0	Unmodified	1175.5969	0.59685707	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.685	37.241	2	0.014842	31820	160511_QHF_FH_JSI11i_2	51.762	37.605			9.418	9.0309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.418	9.0309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14905000	1893700	13011000	0	0	0	0	0	0	14905000	1893700	13011000	0	0	0	36886	5208	34779	226641	305267	305267			1	
MLSSAYISDHMK	1	Unmodified	1381.637	0.63700733	1875	P56270	MAZ	Myc-associated zinc finger protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.5	6.06		3							1			2	2	49.045	45.169	2;3	1.3477E-09	38790	160511_QHF_FH_JSI12i_2	116.52	85.444			0.3833	0.40989	71.947	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7486	0.74402	92.235	2	2	Median	0.39185	0.43963	NaN	1	1	Median	240980000	154960000	86012000	0	0	0	0	0	0	131260000	79327000	51932000	109720000	75636000	34080000	36887	1875	34780	226642;226643;226644;226645	305268;305269;305270;305271	305269			4	
MLSSPVESVLFYAITTLHNLLLYQEGAK	1	Unmodified	3136.6519	0.65185934	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		105.47	97.998	3;4	0	55589	160513_QHF_FH_JSI9Kac_6	357.29	336.24			0.63656	0.78342	8.9986	4	0	Linear	1.1051	0.93322	0.25764	2	0	Median	0.68953	0.80941	6.3453	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7345100000	4116000000	3229100000	1895000000	897280000	997700000	5450100000	3218700000	2231400000	0	0	0	0	0	0	36888	1065	34781	226646;226647;226648;226649;226650	305272;305273;305274;305275;305276;305277;305278;305279	305275			8	
MLSSPVESVLFYAITTLHNLLLYQEGAK	1	Oxidation (M)	3152.6468	0.64677396	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									4	2	2			105.24	97.768	3;4	2.3813E-202	58919	160513_QHF_FH_JSI10Kac_6	298.86	277.52			1.4634	1.465	35.354	4	0	Median	1.2654	1.079	10.1	2	0	Median	1.6422	1.9628	8.2176	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2063600000	867000000	1196600000	1323800000	580120000	743650000	739790000	286880000	452910000	0	0	0	0	0	0	36889	1065	34781	226651;226652;226653;226654	305280;305281;305282;305283;305284;305285;305286;305287	305285		710	8	
MLSTLSQCEFSMGK	1	Unmodified	1617.7201	0.72008503	3048	Q6I9Y2	THOC7	THO complex subunit 7 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.582	63.28	2	4.4833E-05	54397	160511_QHF_FH_JSI12i_2	77.744	65.128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36890	3048	34782	226655	305288	305288			1	
MLSVHVVGYGK	1	Unmodified	1188.6325	0.6325143	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		5	10						10	7	7	5	6	49.182	44.835	2;3	7.7229E-20	24642	160513_QHF_FH_JSI10Kac_6	166.16	144.01			1.124	1.1264	51.208	25	17	Median	1.124	0.96667	36.914	7	5	Median	0.99343	1.1264	37.197	7	5	Median	1.1338	1.0905	64.24	5	3	Median	1.1426	1.2058	65.144	6	4	Median	1877300000	915920000	961340000	386400000	164710000	221690000	571960000	302580000	269380000	447430000	226830000	220610000	471460000	221810000	249650000	36891	387	34783	226656;226657;226658;226659;226660;226661;226662;226663;226664;226665;226666;226667;226668;226669;226670;226671;226672;226673;226674;226675;226676;226677;226678;226679;226680	305289;305290;305291;305292;305293;305294;305295;305296;305297;305298;305299;305300;305301;305302;305303;305304;305305;305306;305307;305308;305309;305310;305311;305312;305313;305314;305315;305316;305317;305318;305319;305320;305321	305321			33	
MLSVHVVGYGK	1	Oxidation (M)	1204.6274	0.62742892	387	O43847	NRD1	Nardilysin	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									4	3		1		48.272	39.054	3	0.0025021	20676	160513_QHF_FH_JSI9Kac_6	57.019	47.066			1.2172	1.0467	75.962	2	1	Median	1.2172	1.0467	75.962	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61580000	21015000	40566000	61580000	21015000	40566000	0	0	0	0	0	0	0	0	0	36892	387	34783	226681;226682;226683;226684	305322;305323;305324;305325	305324		154	3	
MLTAQDMSYDEAR	0	Unmodified	1529.649	0.64902858	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	44.306	43.529	2	9.0761E-53	39371	160511_QHF_FH_JSI11i_1	215.5	186.03			1.0013	1.0195	28.584	5	2	Median	1.0413	0.86532	50.755	2	2	Median	1.0013	1.186	NaN	1	0	Median	1.0399	1.0195	NaN	1	0	Median	0.94381	0.99677	NaN	1	0	Median	513650000	252140000	261510000	147800000	74154000	73647000	95456000	40528000	54928000	127550000	57533000	70013000	142850000	79926000	62921000	36893	2162	34784	226685;226686;226687;226688;226689	305326;305327;305328;305329;305330;305331;305332;305333	305327			8	
MLTAQDVSYDEAR	0	Unmodified	1497.677	0.67695789	234	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		42.387	41.992	2	4.9692E-05	37338	160511_QHF_FH_JSI9i_1	77.64	62.375			1.141	1.2976	41.635	3	3	Median	NaN	NaN	NaN	0	0	Median	0.79762	0.91201	49.871	2	2	Median	1.388	1.3381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84490000	40834000	43657000	0	0	0	51042000	26823000	24220000	33448000	14011000	19437000	0	0	0	36894	234	34785	226690;226691;226692;226693	305334;305335;305336;305337	305337			4	
MLTFLMLVR	0	2 Oxidation (M)	1154.6192	0.61917242	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.931	75.689	2	0.00043002	41179	160513_QHF_FH_JSI9Kac_6	85.064	68.861			1.1086	1.0672	7.9532	4	0	Median	1.1817	0.98936	NaN	1	0	Median	0.91523	1.0925	NaN	1	0	Median	1.0866	1.0424	NaN	1	0	Median	1.131	1.1932	NaN	1	0	Median	589220000	275750000	313470000	195300000	85188000	110110000	156390000	82212000	74181000	109720000	55826000	53893000	127810000	52527000	75281000	36895	3343	34786	226694;226695;226696;226697	305338;305339;305340;305341;305342;305343;305344	305340		2250;2251	7	
MLTFLMLVR	0	Unmodified	1122.6293	0.62934317	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	92.99	84.786	2	2.6227E-32	49436	160513_QHF_FH_JSI10Kac_6	198.87	152.44			1.4032	1.313	98.906	7	6	Median	1.3753	1.1699	136.74	2	2	Median	0.84921	1.0035	154.02	2	2	Median	1.4032	1.313	NaN	1	0	Median	1.3468	1.4088	122.58	2	2	Median	6371500000	2888400000	3483100000	1355000000	594270000	760700000	2562800000	1362300000	1200600000	1349800000	469960000	879870000	1103900000	461870000	642000000	36896	3343	34786	226698;226699;226700;226701;226702;226703;226704	305345;305346;305347;305348;305349;305350;305351;305352	305352			8	
MLTFLMLVR	0	Oxidation (M)	1138.6243	0.6242578	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	88.253	80.482	2	4.1178E-07	44204	160513_QHF_FH_JSI9Kac_6	133.55	99.752			0.90224	0.7746	57.014	5	3	Median	0.90224	0.7746	NaN	1	0	Median	0.66812	0.8008	109.99	2	2	Median	0.8108	0.76234	NaN	1	1	Median	1.0317	1.0941	NaN	1	0	Median	2216600000	1089400000	1127300000	547920000	208800000	339130000	927010000	503620000	423390000	353980000	196430000	157550000	387730000	180530000	207190000	36897	3343	34786	226705;226706;226707;226708;226709	305353;305354;305355;305356;305357;305358;305359	305355		2250;2251	7	
MLTFNPHK	1	Unmodified	986.50077	0.50077184	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.18		4	12						2	4	5	4	5	30.591	28.919	2;3	0.00017609	23876	160511_QHF_FH_JSI12i_3	120.46	111.24			1.0838	1.1138	57.154	17	9	Median	1.6249	1.3299	51.096	4	1	Median	0.82057	0.97021	49.129	4	1	Median	1.1945	1.1414	54.969	4	3	Median	0.57645	0.6561	71.628	5	4	Median	3249300000	1535100000	1714200000	338830000	123030000	215800000	415020000	208350000	206670000	931700000	405250000	526450000	1563700000	798440000	765300000	36898	1309	34787	226710;226711;226712;226713;226714;226715;226716;226717;226718;226719;226720;226721;226722;226723;226724;226725;226726;226727	305360;305361;305362;305363;305364;305365;305366;305367;305368;305369;305370;305371;305372;305373;305374;305375;305376;305377;305378	305376			18	
MLTFSNNVEPANGFLVR	0	Unmodified	1907.9564	0.95636763	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.27	86.279	2	4.4388E-05	74568	160511_QHF_FH_JSI12i_2	82.362	67.943			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36899	3643	34788	226728	305379	305379			1	
MLTGPVYSQSTALTHK	1	Oxidation (M)	1748.8767	0.87672033	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	41.83	41.559	3	6.8724E-06	35573	160511_QHF_FH_JSI12i_3	108.89	108.89			1.0185	0.98739	43.15	6	4	Median	NaN	NaN	NaN	0	0	Median	1.5213	1.88	NaN	1	1	Median	0.7971	0.74603	20.539	2	1	Median	1.1238	1.1302	39.885	3	2	Median	301310000	140630000	160680000	0	0	0	29303000	9632000	19671000	88583000	46467000	42117000	183420000	84531000	98889000	36900	3343	34789	226729;226730;226731;226732;226733;226734	305380;305381;305382;305383;305384;305385;305386;305387	305385		2252	8	
MLTGPVYSQSTALTHK	1	Unmodified	1732.8818	0.8818057	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.39		13	8						5	5	5	8	8	49.563	47.125	2;3	8.8033E-41	41429	160511_QHF_FH_JSI11i_3	170.49	166.13			1.0549	1.0961	38.549	26	18	Median	1.0504	0.88093	26.876	5	3	Median	0.94427	1.1625	23.765	5	3	Median	1.1505	1.1412	50.311	8	6	Median	1.1715	1.2831	36.942	8	6	Median	8839900000	3910200000	4929700000	907840000	398110000	509730000	1138500000	592900000	545570000	3786700000	1664600000	2122000000	3006900000	1254600000	1752400000	36901	3343	34789	226735;226736;226737;226738;226739;226740;226741;226742;226743;226744;226745;226746;226747;226748;226749;226750;226751;226752;226753;226754;226755;226756;226757;226758;226759;226760	305388;305389;305390;305391;305392;305393;305394;305395;305396;305397;305398;305399;305400;305401;305402;305403;305404;305405;305406;305407;305408;305409;305410;305411;305412;305413;305414;305415;305416;305417;305418;305419;305420;305421;305422;305423	305388			36	
MLTGPVYSQSTALTHKQSYYSIAK	2	Acetyl (K)	2715.3578	0.35780258	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.967	67.643	3	1.0712E-149	36923	160513_QHF_FH_JSI11Kac_6	259.77	225.08			0.21884	0.21263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21884	0.21263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69200000	52645000	16555000	0	0	0	0	0	0	69200000	52645000	16555000	0	0	0	36902	3343	34790	226761	305424	305424	2851		1	
MLTKFETK	2	Acetyl (K)	1038.542	0.54196796	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		52.479	41.746	2	0.023258	24380	160513_QHF_FH_JSI11Kac_4	64.841	44.32			0.17611	0.1766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17611	0.1766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3827200	3441800	385330	0	0	0	0	0	0	3827200	3441800	385330	0	0	0	36903	1805	34791	226762	305425	305425	1825		1	
MLTNHTFIK	1	Unmodified	1103.5798	0.57975044	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							1	3	5	3	31.56	31.092	2;3	6.794E-05	27441	160511_QHF_FH_JSI10i_2	93.111	69.791			1.6462	1.8518	80.159	12	11	Median	4.0765	3.4724	NaN	1	1	Median	0.52804	0.6496	83.136	3	3	Median	1.3345	1.3514	70.595	5	4	Median	5.3928	5.4246	97.668	3	3	Plateau	3337800000	858740000	2479100000	65458000	12379000	53079000	270730000	148970000	121750000	1134200000	402740000	731440000	1867500000	294650000	1572800000	36904	1453	34792	226763;226764;226765;226766;226767;226768;226769;226770;226771;226772;226773;226774	305426;305427;305428;305429;305430;305431;305432;305433;305434;305435;305436;305437;305438	305434			13	
MLTNWFAFLLHK	1	Unmodified	1519.801	0.80097661	468	O75051	PLXNA2	Plexin-A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	95.345	87.486	3	3.9961E-20	48951	160513_QHF_FH_JSI9Kac_6	138.94	128.29			1.045	1.0705	73.021	5	2	Median	0.62097	0.52034	NaN	1	0	Median	0.91723	1.0891	130.35	2	2	Median	1.1396	1.0705	NaN	1	0	Median	1.045	1.0968	NaN	1	0	Median	1321600000	675870000	645700000	202180000	120510000	81676000	539200000	293590000	245620000	361320000	158980000	202340000	218880000	102800000	116070000	36905	468	34793	226775;226776;226777;226778;226779	305439;305440;305441;305442;305443;305444;305445	305441			7	
MLTNWFTFLLHK	1	Unmodified	1549.8115	0.8115413	1753	P51805	PLXNA3	Plexin-A3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	94.857	87.276	3	0.0006905	50808	160513_QHF_FH_JSI10Kac_6	67.519	55.137			1.7533	1.9423	132.3	2	1	Median	NaN	NaN	NaN	0	0	Median	4.2032	4.95	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73134	0.76213	NaN	1	0	Median	47566000	16320000	31246000	0	0	0	28816000	4454900	24361000	0	0	0	18750000	11865000	6884500	36906	1753	34794	226780;226781	305446;305447	305447			1	
MLTNWFTFLLYK	1	Unmodified	1575.816	0.81595797	5336	Q9UIW2	PLXNA1	Plexin-A1	no	no	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	98.752	89.325	2	3.9236E-08	51191	160513_QHF_FH_JSI11Kac_6	113.22	77.281			0.49172	0.49637	33.909	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65756	0.63087	NaN	1	0	Median	0.36771	0.39055	NaN	1	1	Median	167520000	110200000	57318000	0	0	0	0	0	0	113270000	72445000	40826000	54248000	37756000	16493000	36907	5336	34795	226782;226783	305448;305449	305448			2	
MLTVTPLQDPQGLFPDLHHFLQVFLPQAIR	0	Unmodified	3470.8537	0.85368747	4743	Q9H6E5	TUT1	Speckle targeted PIP5K1A-regulated poly(A) polymerase	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				100.3	91.148	4	1.8477E-10	52695	160513_QHF_FH_JSI9Kac_6	96.44	81.736			1.6484	1.4117	NaN	1	1	Median	1.6484	1.4117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55353000	10728000	44625000	55353000	10728000	44625000	0	0	0	0	0	0	0	0	0	36908	4743	34796	226784	305450	305450			1	
MLVAAAAER	0	Acetyl (Protein N-term)	972.50625	0.50625115	4232	Q96S19	C16orf13	UPF0585 protein C16orf13	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	65.05	64.351	2	0.00035097	58460	160511_QHF_FH_JSI11i_1	78.516	55.445			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36909	4232	34797	226785;226786;226787	305451;305452;305453	305451			3	
MLVDDIGDVTITNDGATILK	1	Unmodified	2103.0769	0.076936277	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.442	11	4								4	4	3	4	96.473	96.214	2;3	1.8643E-161	86900	160511_QHF_FH_JSI10i_1	308.58	292.64			0.97079	0.96254	35.825	13	4	Median	0.88769	0.74197	18.914	3	1	Plateau	0.6758	0.79685	19.929	4	2	Median	0.97224	0.94351	2.7857	3	1	Plateau	1.0132	1.0856	58.269	3	0	Plateau	1803600000	882390000	921210000	165800000	78623000	87180000	627700000	364270000	263430000	435230000	170520000	264710000	574880000	268980000	305900000	36910	1132	34798	226788;226789;226790;226791;226792;226793;226794;226795;226796;226797;226798;226799;226800;226801;226802	305454;305455;305456;305457;305458;305459;305460;305461;305462;305463;305464;305465;305466;305467;305468;305469;305470;305471;305472;305473;305474;305475;305476;305477;305478;305479;305480;305481;305482;305483;305484;305485;305486;305487;305488;305489;305490;305491;305492	305478			39	
MLVDLAK	1	Unmodified	788.44661	0.44661101	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.39	5	8	6				1	2		5	9	5	3	47.334	45.107	2	0.0057781	38805	160511_QHF_FH_JSI12i_2	97.071	32.295			0.79694	0.78715	87.524	22	21	Median	0.51118	0.41303	90.523	5	5	Median	1.5461	1.8556	89.327	9	9	Median	0.60225	0.57769	89.829	5	5	Median	1.0546	1.0526	112.37	3	2	Median	27919000000	13953000000	13966000000	5343800000	2384600000	2959200000	8001300000	4149900000	3851400000	9881700000	5041100000	4840600000	4692500000	2377400000	2315100000	36911	856	34799	226803;226804;226805;226806;226807;226808;226809;226810;226811;226812;226813;226814;226815;226816;226817;226818;226819;226820;226821;226822;226823;226824	305493;305494;305495;305496;305497;305498;305499;305500;305501;305502;305503;305504;305505;305506;305507;305508;305509;305510;305511;305512;305513;305514;305515;305516;305517;305518;305519;305520;305521;305522	305500			30	
MLVDLAKSR	1	Acetyl (K)	1073.5903	0.59031513	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		63.039	52.272	2	4.7129E-05	28431	160513_QHF_FH_JSI11Kac_5	125.82	22.254			0.3946	0.38907	94.567	3	0	Median	NaN	NaN	NaN	0	0	Median	0.59765	0.70373	124.68	2	0	Median	0.3946	0.38907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58600000	41023000	17578000	0	0	0	14682000	7518800	7163100	43918000	33504000	10415000	0	0	0	36912	856	34800	226825;226826;226827	305523;305524;305525;305526	305524	536		4	
MLVDLAKSR	1	Acetyl (K);Oxidation (M)	1089.5852	0.58522975	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		52.231	41.516	2	0.047089	23074	160513_QHF_FH_JSI11Kac_5	53.756	14.452			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36913	856	34800	226828	305527	305527	536		1	
MLVEAIMLLTATAPGR	0	Unmodified	1685.9208	0.92083375	4428	Q9BTY7	HGH1	Protein HGH1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.539	90.818	2	0.0024411	52638	160513_QHF_FH_JSI10Kac_6	122.46	90.451			3.9085	4.5287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.9085	4.5287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115970000	22483000	93486000	0	0	0	115970000	22483000	93486000	0	0	0	0	0	0	36914	4428	34801	226829	305528	305528			1	
MLVELSK	1	Unmodified	818.45718	0.45717569	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.91	5	6	3				2	4		2	5	7	6	45.143	41.596	2	0.0049729	35495	160511_QHF_FH_JSI12i_2	105.39	21.776			1.5592	1.5634	82.645	20	15	Median	1.9951	1.6949	40.056	2	1	Median	1.63	1.9143	82.795	5	4	Median	1.1054	1.0993	106.07	7	6	Median	1.4354	1.5338	68.605	6	4	Median	8168600000	4200400000	3968200000	753300000	321770000	431530000	2174100000	1264700000	909400000	3636400000	1825700000	1810700000	1604800000	788250000	816590000	36915	1722	34802	226830;226831;226832;226833;226834;226835;226836;226837;226838;226839;226840;226841;226842;226843;226844;226845;226846;226847;226848;226849	305529;305530;305531;305532;305533;305534;305535;305536;305537;305538;305539;305540;305541;305542;305543;305544;305545;305546;305547;305548;305549;305550	305533			22	
MLVETAQER	0	Unmodified	1075.5332	0.53319418	1681	P49768	PSEN1	Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12	no	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		22.975	22.373	2	0.00061791	18469	160511_QHF_FH_JSI11i_2	77.318	8.4027			0.95243	1.0383	62.713	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55433	0.66637	NaN	1	0	Median	1.6364	1.6177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73199000	38102000	35097000	0	0	0	25534000	17974000	7559800	47665000	20128000	27537000	0	0	0	36916	1681	34803	226850;226851	305551;305552;305553	305551			3	
MLVEYTQNQK	1	Unmodified	1252.6122	0.61217279	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.164	31.239	2	8.1287E-07	27388	160511_QHF_FH_JSI10i_2	112.84	96.302			0.59906	0.61879	16.209	4	0	Median	0.69368	0.60479	NaN	1	0	Median	0.51735	0.6331	NaN	1	0	Median	0.79131	0.79043	NaN	1	0	Median	0.46607	0.53637	NaN	1	0	Median	231130000	135810000	95321000	57038000	28282000	28756000	32889000	21424000	11464000	86739000	52287000	34452000	54466000	33818000	20649000	36917	4921	34804	226852;226853;226854;226855	305554;305555;305556;305557;305558;305559	305558			6	
MLVIEQCK	1	Unmodified	1019.5144	0.514373	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	4						4			1	2	3	2	40.274	35.566	2	0.0014643	31746	160511_QHF_FH_JSI10i_1	89.142	62.54			1.4945	1.7398	33.268	7	5	Median	2.4735	2.106	NaN	1	1	Median	1.232	1.4343	27.315	2	1	Median	1.187	1.1543	26.15	2	1	Median	2.0612	2.208	3.5573	2	2	Median	989380000	482300000	507080000	65738000	23362000	42375000	348090000	183020000	165070000	347750000	179920000	167830000	227800000	96000000	131800000	36918	1630	34805	226856;226857;226858;226859;226860;226861;226862;226863	305560;305561;305562;305563;305564;305565;305566;305567;305568	305564			9	
MLVIEQCKNSR	1	Acetyl (K)	1418.701	0.70100457	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.304	41.59	2	0.029233	23097	160513_QHF_FH_JSI11Kac_5	54.608	37.172			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1141200	1141200	0	0	0	0	0	0	0	1141200	1141200	0	0	0	0	36919	1630	34806	226864	305569	305569			1	
MLVIPPGLSEEEEALQK	1	Unmodified	1881.9758	0.97576567	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		91.374	91.314	2	0.019709	80281	160511_QHF_FH_JSI11i_2	43.628	30.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5435200	5435200	0	0	0	0	5435200	5435200	0	0	0	0	0	0	0	36920	1142	34807	226865;226866	305570;305571	305571			2	
MLVLDEADEMLNK	1	Unmodified	1519.7262	0.72621627	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	88.074	87.498	2	4.9598E-67	75495	160511_QHF_FH_JSI12i_2	236.92	219.06			0.97084	1.0727	15.377	7	2	Median	0.8852	0.74136	NaN	1	0	Median	0.90191	1.067	14.808	2	1	Median	1.0408	1.0388	7.53	2	0	Median	1.0227	1.0867	1.8261	2	1	Median	1595900000	732960000	862980000	226980000	104150000	122830000	524150000	241610000	282540000	443220000	198410000	244810000	401590000	188790000	212800000	36921	1481	34808	226867;226868;226869;226870;226871;226872;226873;226874;226875	305572;305573;305574;305575;305576;305577;305578;305579;305580;305581;305582;305583;305584;305585;305586;305587;305588;305589;305590	305574			19	
MLVLDSDK	1	Unmodified	919.46847	0.46846866	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		37.995	37.631	2	0.0083499	32284	160511_QHF_FH_JSI11i_2	57.047	20.027			1.376	1.3396	47.115	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.376	1.3396	47.115	2	1	Median	NaN	NaN	NaN	0	0	Median	72865000	24164000	48700000	0	0	0	0	0	0	72865000	24164000	48700000	0	0	0	36922	2736	34809	226876;226877;226878	305591;305592;305593	305592			3	
MLVLVLGDLHIPHR	0	Unmodified	1611.9283	0.92830239	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			83.451	77.825	3;4	8.3228E-05	43322	160513_QHF_FH_JSI10Kac_6	102.52	90.906			0.58514	0.68906	7.6809	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58514	0.68906	7.6809	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	591320000	354570000	236750000	0	0	0	591320000	354570000	236750000	0	0	0	0	0	0	36923	5246	34810	226879;226880;226881	305594;305595;305596;305597	305597			4	
MLVQCMQDQEHPSIR	0	Unmodified	1870.8488	0.84880779	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									3	1	42.318	42.206	2;3	2.6754E-17	36343	160511_QHF_FH_JSI11i_2	106.19	96.772			1.1003	1.0651	28.905	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93456	0.8682	NaN	1	0	Median	1.2955	1.3066	NaN	1	0	Median	201110000	82642000	118470000	0	0	0	0	0	0	98786000	46998000	51788000	102320000	35645000	66679000	36924	127	34811	226882;226883;226884;226885	305598;305599;305600;305601;305602	305600			4	
MLVSGAGDIK	1	Unmodified	989.52157	0.52156686	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	2.97	7	5	4				1			4	4	4	5	36.906	35.635	2	1.3908E-07	31391	160511_QHF_FH_JSI10i_2	120.31	85.011			1.1198	1.1025	84.362	17	14	Median	0.8531	0.69025	133.94	4	3	Median	0.78878	0.93251	57.883	4	3	Median	2.1464	2.1297	70.433	4	4	Median	1.1198	1.1277	81.289	5	4	Median	10194000000	4606500000	5587600000	2033200000	902810000	1130400000	2824800000	1329900000	1495000000	3289300000	1413600000	1875700000	2046800000	960240000	1086500000	36925	1494;3835	34812	226886;226887;226888;226889;226890;226891;226892;226893;226894;226895;226896;226897;226898;226899;226900;226901;226902	305603;305604;305605;305606;305607;305608;305609;305610;305611;305612;305613;305614;305615;305616;305617;305618;305619;305620;305621;305622;305623	305622			21	
MLVSGAGDIK	1	Oxidation (M)	1005.5165	0.51648149	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	1	0		By MS/MS		By MS/MS	14	0							2				1		1	34.926	25.525	2	0.012477	15141	160513_QHF_FH_JSI10Kac_4	65.224	35.039			0.48619	0.53719	45.281	2	2	Median	NaN	NaN	NaN	0	0	Median	0.34046	0.39001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69431	0.73992	NaN	1	1	Median	7789400	4960600	2828800	0	0	0	2436200	1598000	838240	0	0	0	5353200	3362600	1990600	36926	1494;3835	34812	226903;226904	305624;305625	305624		1177	2	
MLVSGQGPVMENAQGLGFR	0	Unmodified	1989.9765	0.97645115	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	75.469	75.124	2	3.2549E-43	67079	160511_QHF_FH_JSI11i_3	165.73	150.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36927	4529	34813	226905;226906;226907	305626;305627;305628	305626			3	
MLVSYYR	0	Unmodified	930.46332	0.4633237	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		15.7	0.471								1	2	2		1		47.567	37.821	2	0.055038	20198	160513_QHF_FH_JSI9Kac_6	49.59	33.296			1.2028	1.0647	2.4858	3	0	Median	1.2159	1.0497	3.3186	2	0	Median	NaN	NaN	NaN	0	0	Median	1.087	1.0647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82926000	37810000	45116000	41269000	17431000	23838000	0	0	0	41657000	20380000	21277000	0	0	0	36928	2302	34814	226908;226909;226910	305629	305629			1	
MLVTFDEELRPLPVSVR	0	Unmodified	2000.0765	0.076482767	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	91.474	91.042	3	1.444E-06	80669	160511_QHF_FH_JSI10i_2	115.5	111.53			0.96277	0.98582	21.129	7	1	Median	1.057	0.89097	NaN	1	0	Median	0.78952	0.9645	NaN	1	0	Median	1.4505	1.4125	22.062	2	0	Median	0.91467	0.98582	2.035	3	1	Median	845520000	407270000	438250000	70180000	29550000	40630000	85991000	43376000	42615000	215640000	82452000	133190000	473710000	251890000	221820000	36929	2370	34815	226911;226912;226913;226914;226915;226916;226917	305630;305631;305632;305633;305634;305635;305636;305637;305638;305639;305640;305641;305642;305643;305644;305645	305642			16	
MLVVAEQPLHAMR	0	Unmodified	1493.7847	0.78467462	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		56.834	56.132	3	1.1998E-05	48567	160511_QHF_FH_JSI11i_2	111.26	103.15			0.73795	0.83268	11.147	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6241	0.76957	NaN	1	1	Median	0.87257	0.90098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152040000	89528000	62512000	0	0	0	59117000	34295000	24821000	92924000	55233000	37691000	0	0	0	36930	641	34816	226918;226919	305646;305647;305648	305646			3	
MLVVGGIDR	0	Unmodified	958.52699	0.52698659	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.5	2	4	5				2	4	4	4	7	5	5	51.917	46.894	2	4.8075E-05	40376	160511_QHF_FH_JSI11i_2	98.299	80.914			1.2172	1.1584	23.434	20	3	Median	1.3099	1.1293	11.028	4	0	Median	0.94467	1.1291	24.832	7	2	Median	1.3145	1.2879	23.684	5	1	Median	1.4001	1.4875	22.643	4	0	Median	2299400000	1157400000	1142000000	361100000	172380000	188730000	554870000	311130000	243730000	817520000	383420000	434100000	565860000	290430000	275440000	36931	2614	34817	226920;226921;226922;226923;226924;226925;226926;226927;226928;226929;226930;226931;226932;226933;226934;226935;226936;226937;226938;226939;226940	305649;305650;305651;305652;305653;305654;305655;305656;305657;305658;305659;305660;305661;305662;305663;305664;305665;305666;305667;305668;305669;305670;305671;305672;305673;305674;305675;305676	305664			28	
MLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELK	1	Unmodified	3794.9149	0.91490333	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.678	88.807	3;4	0	52659	160513_QHF_FH_JSI10Kac_6	399.31	381.54			1.186	0.58556	69.147	5	1	Linear	1.2975	1.1045	NaN	1	0	Median	0.6094	0.72347	13.823	2	0	Median	4.0964	3.8777	NaN	1	1	Median	1.186	1.2448	NaN	1	0	Median	2241200000	1123800000	1117400000	399680000	182390000	217280000	1498800000	844110000	654720000	132910000	17147000	115760000	209790000	80139000	129650000	36932	916	34818	226941;226942;226943;226944;226945	305677;305678;305679;305680;305681;305682;305683;305684;305685	305685			9	
MLVVLLQGTR	0	Unmodified	1128.6689	0.6688998	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		77.528	69.744	2	0.0011227	37687	160513_QHF_FH_JSI11Kac_6	87.308	48.286			0.18164	0.19401	46.733	2	2	Median	NaN	NaN	NaN	0	0	Median	0.22831	0.26999	NaN	1	1	Median	0.14452	0.13942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117730000	92223000	25510000	0	0	0	100890000	77330000	23556000	16846000	14892000	1953800	0	0	0	36933	891	34819	226946;226947	305686;305687	305686			2	
MLWFQGAIPAAIATAK	1	Unmodified	1687.912	0.91198362	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.9	5.96			7						3	2	2	4	2	99.548	97.472	2;3	7.4071E-40	88123	160511_QHF_FH_JSI12i_3	233.32	213.56			1.023	1.1344	30.408	9	2	Median	1.1372	0.94893	60.631	2	1	Median	0.98238	1.1409	0.81252	2	0	Median	1.4529	1.3935	40.475	3	1	Median	1.0304	1.039	2.5908	2	0	Median	1218500000	598550000	619970000	58617000	24001000	34617000	202850000	102980000	99868000	382840000	176000000	206840000	574220000	295570000	278650000	36934	3848	34820	226948;226949;226950;226951;226952;226953;226954;226955;226956;226957	305688;305689;305690;305691;305692;305693;305694;305695	305694			8	
MLWGSDPYPHAEPQQATTPK	1	Unmodified	2253.0525	0.052452861	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	2	1	4	3	57.582	54.86	3	2.8012E-14	29507	160513_QHF_FH_JSI11Kac_6	131.67	117.05			1.0444	0.98721	24.043	8	3	Median	1.1087	0.97114	1.51	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0514	1.0405	34.753	4	2	Median	0.95578	1.0372	10.367	2	1	Median	674210000	330080000	344120000	136910000	65248000	71662000	0	0	0	360450000	174050000	186400000	176850000	90787000	86059000	36935	5646	34821	226958;226959;226960;226961;226962;226963;226964;226965;226966;226967	305696;305697;305698;305699;305700;305701;305702;305703;305704;305705;305706;305707;305708;305709	305700			14	
MLYAATR	0	Unmodified	824.42146	0.42145889	2306;3053	Q12792;Q6IBS0	TWF1;TWF2	Twinfilin-1;Twinfilin-2	no	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			26.223	18.107	2	0.011063	10811	160513_QHF_FH_JSI10Kac_6	81.381	61.535			1.0285	1.0484	3.1228	2	0	Median	1.2293	1.0719	NaN	1	0	Median	0.86044	1.0255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19485000	9778100	9706900	9467500	4499700	4967700	10017000	5278300	4739100	0	0	0	0	0	0	36936	2306;3053	34822	226968;226969	305710;305711	305711			2	
MLYDMENPPADEYFGR	0	Unmodified	1946.8179	0.81788482	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	3	2	76.387	75.726	2	8.8724E-22	68640	160511_QHF_FH_JSI10i_1	176.51	161.63			1.2309	1.4401	18.478	9	4	Median	2.0021	1.6884	14.308	2	1	Median	1.1101	1.3182	14.692	2	1	Median	1.4731	1.4401	22.961	3	2	Median	1.1743	1.2402	0.060098	2	0	Median	325760000	146840000	178920000	55641000	20893000	34748000	76601000	37362000	39239000	116050000	51842000	64206000	77473000	36742000	40730000	36937	3927	34823	226970;226971;226972;226973;226974;226975;226976;226977;226978;226979	305712;305713;305714;305715;305716;305717;305718;305719;305720;305721;305722;305723;305724;305725;305726;305727	305718			16	
MLYLIGLGLGDAK	1	Unmodified	1362.7581	0.75810874	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.4		1							8	2	2	3	2	92.129	84.729	2;3	8.3972E-27	46076	160513_QHF_FH_JSI11Kac_6	196.27	152.46			2.1977	2.2457	156.39	8	8	Median	1.0283	0.87153	209.73	2	2	Median	6.9143	8.0274	NaN	1	1	Median	1.3072	1.3133	188.95	3	3	Median	1.299	1.3761	148.14	2	2	Median	1559700000	609270000	950420000	435510000	204670000	230840000	202540000	46586000	155960000	617770000	244380000	373390000	303860000	113640000	190230000	36938	4680	34824	226980;226981;226982;226983;226984;226985;226986;226987;226988	305728;305729;305730;305731;305732;305733;305734;305735;305736	305729			9	
MLYLIGLGLGDAK	1	Oxidation (M)	1378.753	0.75302336	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		87.119	77.795	2	0.00076548	43318	160513_QHF_FH_JSI11Kac_6	94.616	74.854			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36939	4680	34824	226989	305737	305737		2511	1	
MLYPGSVYLLQK	1	Unmodified	1410.7581	0.75810874	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	80.356	79.467	2	0.0018949	69754	160511_QHF_FH_JSI11i_2	73.067	57.923			1.2387	1.2761	19.273	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1295	1.1135	NaN	1	1	Median	1.3584	1.4624	NaN	1	1	Median	74694000	33652000	41042000	0	0	0	0	0	0	50153000	22855000	27298000	24541000	10797000	13744000	36940	740	34825	226990;226991	305738;305739	305739			2	
MLYSSCK	1	Unmodified	887.38811	0.38810985	2306;3053	Q12792;Q6IBS0	TWF1;TWF2	Twinfilin-1;Twinfilin-2	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	14.898	14.329	2	0.033819	11369	160511_QHF_FH_JSI12i_2	51.787	32.31			0.78432	0.84485	101.11	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48661	0.49025	66.966	2	2	Median	1.5827	1.7954	96.604	2	2	Median	265850000	132270000	133580000	0	0	0	0	0	0	129440000	81608000	47828000	136410000	50659000	85755000	36941	2306;3053	34826	226992;226993;226994;226995	305740;305741;305742;305743;305744	305741			5	
MLYVPVMPGHAK	1	Unmodified	1341.6937	0.69373435	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	58.376	57.634	3	0.00028707	50979	160511_QHF_FH_JSI10i_2	64.439	56.528			1.0577	1.1282	21.41	5	1	Median	1.1459	0.98269	NaN	1	0	Median	0.91228	1.1282	NaN	1	0	Median	1.3852	1.3735	32.118	2	1	Median	1.0577	1.2065	NaN	1	0	Median	290210000	137690000	152520000	37953000	15674000	22280000	59478000	34396000	25082000	127500000	56641000	70862000	65271000	30978000	34294000	36942	5	34827	226996;226997;226998;226999;227000;227001	305745;305746;305747;305748;305749;305750;305751;305752;305753;305754;305755	305755			11	
MLYVWALCR	0	Unmodified	1210.5991	0.59910568	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.352	74.108	2	4.4694E-11	41826	160513_QHF_FH_JSI10Kac_6	154.09	135.31			0.97185	0.99932	19.357	4	0	Median	0.97123	0.83182	NaN	1	0	Median	0.8111	0.96564	NaN	1	0	Median	1.364	1.3231	NaN	1	0	Median	0.97247	1.0342	NaN	1	0	Median	433660000	196360000	237300000	55296000	29440000	25855000	212000000	96597000	115400000	100630000	45454000	55180000	65731000	24865000	40866000	36943	346	34828	227002;227003;227004;227005	305756;305757;305758;305759;305760;305761	305761			6	
MMADEALGSGLVSR	0	Unmodified	1435.6799	0.67993477	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.76	3.15	5	6	5					1		4	4	5	4	59.638	58.9	2;3	1.3735E-14	53330	160511_QHF_FH_JSI10i_1	189.13	177.97			0.90238	0.9914	36.332	16	4	Median	1.1733	0.97642	20.859	3	0	Median	0.85946	1.0271	52.534	4	1	Median	1.1525	1.1249	39.544	5	2	Median	0.88992	0.96052	31.373	4	1	Median	5249800000	2629800000	2620000000	835660000	358860000	476790000	1186700000	621620000	565040000	1843200000	848120000	995120000	1384300000	801190000	583090000	36944	2340	34829	227006;227007;227008;227009;227010;227011;227012;227013;227014;227015;227016;227017;227018;227019;227020;227021;227022	305762;305763;305764;305765;305766;305767;305768;305769;305770;305771;305772;305773;305774;305775;305776;305777;305778;305779;305780;305781;305782;305783;305784;305785;305786;305787;305788;305789	305775			27	
MMADEALGSGLVSR	0	Oxidation (M)	1451.6748	0.6748494	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	51.568	51.029	2	0.022416	43296	160511_QHF_FH_JSI12i_2	47.429	39.783			2.9707	3.01	40.454	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3442	2.2612	NaN	1	0	Median	3.7646	4.0068	NaN	1	0	Median	91170000	24737000	66434000	0	0	0	0	0	0	48178000	14809000	33369000	42993000	9927700	33065000	36945	2340	34829	227023;227024;227025	305790;305791	305790			2	
MMAEIYANGPISCGIMATER	0	Unmodified	2213.9942	0.9941514	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	83.343	82.494	3	5.1724E-05	72599	160511_QHF_FH_JSI11i_2	71.742	59.079			1.9669	2.0093	6.394	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2351	2.1022	NaN	1	1	Median	1.7308	1.9205	NaN	1	1	Median	32232000	7892700	24340000	0	0	0	0	0	0	16534000	4701300	11833000	15699000	3191400	12507000	36946	5250	34830	227026;227027	305792;305793	305793			2	
MMALDREVQYLLNK	1	Unmodified	1722.8797	0.87969721	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	90.444	90.127	2;3	0.00034139	78232	160511_QHF_FH_JSI12i_3	82.069	76.64			2.6458	2.4791	45.763	5	5	Median	NaN	NaN	NaN	0	0	Median	3.0483	3.6167	60.959	2	2	Median	2.1302	1.984	31.504	2	2	Median	2.7707	2.9281	NaN	1	1	Median	201650000	57319000	144330000	0	0	0	62996000	14491000	48505000	91505000	27841000	63664000	47151000	14986000	32165000	36947	5633	34831	227028;227029;227030;227031;227032	305794;305795;305796;305797;305798	305798			5	
MMANGILK	1	Unmodified	876.45613	0.45612984	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	38.615	37.929	2	0.0023164	33243	160511_QHF_FH_JSI9i_2	89.673	67.051			0.81211	0.97014	19.65	6	5	Linear	0.83252	0.70431	11.557	2	2	Median	0.83854	1.0324	NaN	1	1	Median	0.8206	0.79872	28.025	2	1	Median	0.74853	0.74837	NaN	1	1	Median	1572100000	808540000	763580000	339050000	178610000	160450000	445890000	264040000	181850000	695180000	320260000	374920000	91992000	45625000	46368000	36948	1234	34832	227033;227034;227035;227036;227037;227038	305799;305800;305801;305802;305803;305804	305801			6	
MMASGLTER	0	Unmodified	994.45759	0.4575864	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	25.132	24.285	2	0.0029291	20197	160511_QHF_FH_JSI11i_2	62.546	31.81			1.3246	1.3822	40.436	6	1	Median	1.5534	1.3368	NaN	1	0	Median	1.2864	1.5381	10.397	2	0	Median	1.2454	1.2642	NaN	1	0	Median	1.2047	1.3447	87.949	2	1	Median	834310000	390010000	444300000	121610000	45477000	76136000	167730000	81881000	85853000	262330000	136030000	126300000	282630000	126620000	156020000	36949	5279	34833	227039;227040;227041;227042;227043;227044	305805;305806;305807;305808;305809	305808			5	
MMCGAPSATQPATAETQHIADQVR	0	Acetyl (Protein N-term);Oxidation (M)	2628.1731	0.17305506	804	P04080	CSTB	Cystatin-B	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	60.539	60.006	2;3	5.4752E-23	54492	160511_QHF_FH_JSI12i_1	142.97	138.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36950	804	34834	227045;227046;227047;227048;227049	305810;305811;305812;305813;305814	305812		318;319	5	
MMCGAPSATQPATAETQHIADQVR	0	Acetyl (Protein N-term)	2612.1781	0.17814043	804	P04080	CSTB	Cystatin-B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	68.386	67.818	2;3	7.1771E-33	61753	160511_QHF_FH_JSI12i_1	226.7	220.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36951	804	34834	227050;227051;227052;227053;227054;227055;227056;227057	305815;305816;305817;305818;305819;305820;305821;305822;305823	305818			9	
MMDIPEIRK	1	Unmodified	1131.578	0.57803589	4353	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	1	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	48.026	47.224	3	0.00097089	40201	160511_QHF_FH_JSI12i_3	50.108	43.006			1.1351	1.1402	15.968	4	0	Median	1.3391	1.1702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1208	1.1182	NaN	1	0	Median	0.93485	0.98691	23.166	2	0	Median	214320000	92785000	121530000	28284000	10218000	18066000	0	0	0	46202000	20235000	25966000	139830000	62332000	77498000	36952	4353	34835	227058;227059;227060;227061	305824;305825	305825			2	
MMDYLQGSGETPQTDVR	0	Oxidation (M)	1942.8401	0.84007682	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	47.027	46.436	2	1.5258E-10	41894	160511_QHF_FH_JSI10i_1	145.71	116.41			1.017	0.90888	34.023	6	2	Median	1.1187	0.92369	NaN	1	0	Median	0.62437	0.7271	20.518	2	1	Median	1.2987	1.2452	46.809	2	1	Median	1.1085	1.1341	NaN	1	0	Median	239110000	115410000	123710000	33672000	16832000	16840000	60543000	33711000	26832000	76308000	31464000	44844000	68592000	33402000	35189000	36953	2569	34836	227062;227063;227064;227065;227066;227067;227068	305826;305827;305828;305829;305830;305831;305832;305833	305831		2015;2016	8	
MMDYLQGSGETPQTDVR	0	Unmodified	1926.8452	0.8451622	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	8	7								5	3	4	3	53.806	53.02	2;3	5.5262E-117	47814	160511_QHF_FH_JSI10i_1	344.48	333.38			1.1368	1.1308	25.873	12	3	Median	1.4624	1.2404	34.755	4	2	Median	0.80487	0.9515	26.863	3	1	Median	1.0609	1.036	0.12105	2	0	Median	1.1967	1.2729	6.8516	3	0	Median	5369100000	2740200000	2629000000	1186300000	485520000	700750000	1343700000	737600000	606110000	1368200000	731900000	636300000	1471000000	785170000	685800000	36954	2569	34836	227069;227070;227071;227072;227073;227074;227075;227076;227077;227078;227079;227080;227081;227082;227083	305834;305835;305836;305837;305838;305839;305840;305841;305842;305843;305844;305845;305846;305847;305848;305849;305850;305851;305852;305853;305854;305855;305856;305857	305845			24	
MMEDMNLNEDK	1	Unmodified	1368.536	0.53597265	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.373	38.941	2	0.00070581	34988	160511_QHF_FH_JSI10i_1	82.029	80.831			0.60992	0.58104	162.11	3	3	Median	NaN	NaN	NaN	0	0	Median	0.31579	0.35613	NaN	1	1	Median	0.60992	0.58104	NaN	1	1	Median	7.3698	7.3003	NaN	1	1	Median	56361000	32741000	23620000	0	0	0	18017000	13771000	4245800	25377000	16977000	8400000	12967000	1993100	10974000	36955	4986	34837	227084;227085;227086	305858;305859;305860;305861	305861			4	
MMEEFVPHSK	1	Unmodified	1233.5522	0.55221507	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.038	36.604	3	0.038355	31152	160511_QHF_FH_JSI11i_2	29.063	26.224			0.86706	0.85625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86706	0.85625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	153480000	69286000	84199000	0	0	0	0	0	0	153480000	69286000	84199000	0	0	0	36956	5507	34838	227087	305862	305862			1	
MMEIMTR	0	Unmodified	910.40747	0.40746508	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.59	5.17	2	7	5					1	2	4	4	6	3	38.069	35.758	2	0.00022999	31284	160511_QHF_FH_JSI9i_2	146.21	125.92			1.198	1.1295	80.62	17	11	Median	1.619	1.3126	67.389	4	3	Median	0.80104	0.94768	79.676	4	4	Median	0.83988	0.79501	116.18	6	3	Median	0.90887	0.98586	37.767	3	1	Median	18958000000	8540200000	10418000000	3987200000	1413700000	2573500000	5066300000	2628600000	2437600000	7360700000	3115600000	4245100000	2543700000	1382400000	1161400000	36957	1948	34839	227088;227089;227090;227091;227092;227093;227094;227095;227096;227097;227098;227099;227100;227101;227102;227103;227104	305863;305864;305865;305866;305867;305868;305869;305870;305871;305872;305873;305874;305875;305876;305877;305878;305879;305880;305881	305874			19	
MMENGIKPVYVFDGKPPQLK	3	Unmodified	2290.1854	0.18538129	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	70.518	69.779	3;4	1.5868E-24	60298	160511_QHF_FH_JSI12i_3	171.47	162.43			0.98654	0.92972	13.677	9	0	Median	0.98718	0.83332	15.481	2	0	Median	0.98654	1.1405	14.513	3	0	Median	0.99543	0.93642	3.1439	2	0	Median	0.95759	0.95973	5.8165	2	0	Median	2523100000	1273600000	1249600000	210710000	106610000	104100000	359950000	194110000	165840000	769630000	338110000	431520000	1182900000	634750000	548110000	36958	1488	34840	227105;227106;227107;227108;227109;227110;227111;227112;227113	305882;305883;305884;305885;305886;305887;305888;305889;305890;305891;305892;305893;305894;305895;305896;305897;305898;305899	305898			18	
MMENHVSQASVTIR	0	Unmodified	1601.7654	0.76539574	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			40.426	31.809	3	0.044811	17740	160513_QHF_FH_JSI10Kac_6	20.828	15.65			1.0837	1.2965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0837	1.2965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3282500	2057800	1224600	0	0	0	3282500	2057800	1224600	0	0	0	0	0	0	36959	15	34841	227114	305900	305900			1	
MMETFQQLITYK	1	Unmodified	1531.7415	0.7414724	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	85.169	84.108	2	1.5518E-05	72720	160511_QHF_FH_JSI12i_2	93.258	86.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36960	2227	34842	227115	305901	305901			1	
MMETMDQGDVIIRPSSK	1	Unmodified	1936.9057	0.90565397	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.893	51.893	3	0.00032089	45928	160511_QHF_FH_JSI11i_3	71.558	61.6			1.9428	1.8614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9428	1.8614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30085000	9252900	20832000	0	0	0	0	0	0	30085000	9252900	20832000	0	0	0	36961	3212	34843	227116	305902	305902			1	
MMEVAAADVK	1	Unmodified	1063.5042	0.50420224	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	37.132	36.449	2	0.00056264	32799	160511_QHF_FH_JSI11i_1	86.898	69.658			1.3817	1.3048	40.239	5	4	Median	1.3817	1.1435	NaN	1	0	Median	1.7816	2.1475	34.445	2	2	Median	1.0091	0.97996	NaN	1	1	Median	1.2366	1.3048	NaN	1	1	Median	975430000	357370000	618060000	197910000	80073000	117830000	290610000	101200000	189410000	269640000	95667000	173970000	217280000	80428000	136850000	36962	4160	34844	227117;227118;227119;227120;227121	305903;305904;305905;305906;305907	305903			5	
MMGGAGPGSSLEAR	0	Unmodified	1319.5962	0.59620515	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		31.701	31.313	2	0.0052249	26682	160511_QHF_FH_JSI11i_2	68.893	58.135			2.4982	2.5315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4982	2.5315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23597000	8295800	15302000	0	0	0	0	0	0	23597000	8295800	15302000	0	0	0	36963	727	34845	227122;227123	305908;305909	305909			2	
MMGHRPVLVLSQNTK	1	Acetyl (Protein N-term);2 Oxidation (M)	1783.9073	0.90730895	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	2	1	By MS/MS	By MS/MS			16	0									2	1	1			43.517	34.63	3	0.0013868	18524	160513_QHF_FH_JSI9Kac_6	37.583	27.098			1.087	1.1029	25.327	2	0	Median	1.0681	0.92206	NaN	1	0	Median	1.1062	1.3192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20900000	10777000	10123000	10944000	5342100	5601800	9956200	5434500	4521700	0	0	0	0	0	0	36964	1655	34846	227124;227125	305910;305911;305912	305911		1335;1336	3	
MMGHRPVLVLSQNTK	1	Acetyl (Protein N-term);Oxidation (M)	1767.9124	0.91239433	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	1	1	1	By MS/MS	By MS/MS			16	0									3	2	1			52.732	43.821	3	0.00041564	24117	160513_QHF_FH_JSI10Kac_6	44.294	33.44			1.2276	1.461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2276	1.461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15082000	4500300	10582000	4899600	0	4899600	10183000	4500300	5682200	0	0	0	0	0	0	36965	1655	34846	227126;227127;227128	305913;305914;305915	305915		1335;1336	3	
MMGLEVLGEK	1	Unmodified	1105.5512	0.55115243	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.73	4	7	4							2	2	4	7	68.465	67.857	2	2.7359E-08	60242	160511_QHF_FH_JSI10i_2	126.07	108.68			0.92818	1.0471	30.16	9	5	Median	1.4022	1.2015	NaN	1	1	Median	0.79468	0.95113	13.596	2	0	Median	0.92818	0.8574	30.158	3	1	Median	1.1596	1.1831	49.478	3	3	Median	2110600000	1088000000	1022600000	339560000	160250000	179310000	534280000	324950000	209330000	785250000	389430000	395810000	451510000	213350000	238160000	36966	2282	34847	227129;227130;227131;227132;227133;227134;227135;227136;227137;227138;227139;227140;227141;227142;227143	305916;305917;305918;305919;305920;305921;305922;305923;305924;305925;305926;305927;305928;305929;305930;305931;305932	305929			16	
MMGNMTSPR	0	Unmodified	1023.43	0.42999144	5754	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	20.741	19.709	2	0.039261	16698	160511_QHF_FH_JSI9i_2	38.16	33.172			1.4814	1.463	17.916	2	0	Median	1.4579	1.289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5052	1.6606	NaN	1	0	Median	50763000	21171000	29592000	30827000	13689000	17138000	0	0	0	0	0	0	19935000	7481700	12453000	36967	5754	34848	227144;227145	305933	305933			1	
MMHSNMETLYK	1	Unmodified	1383.5985	0.59851333	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	33.819	32.809	2;3	4.1049E-06	28007	160511_QHF_FH_JSI12i_2	111.46	101.67			1.3278	1.6157	57.08	5	2	Median	0.79778	0.69436	NaN	1	0	Median	1.3278	1.6157	NaN	1	1	Median	3.2472	3.2707	NaN	1	1	Median	1.4662	1.6152	31.08	2	0	Median	232210000	94641000	137570000	56775000	28023000	28753000	21084000	2793100	18291000	24244000	1750500	22494000	130110000	62075000	68034000	36968	432	34849	227146;227147;227148;227149;227150	305934;305935;305936;305937;305938;305939	305934			6	
MMIHGFQSSHR	0	Acetyl (Protein N-term)	1371.6176	0.61760929	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS			11.7	6.13			1						2	1	2			48.426	42.157	2;3	1.4514E-05	23200	160513_QHF_FH_JSI10Kac_6	98.898	82.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36969	554	34850	227151;227152;227153	305940;305941;305942	305942			3	
MMILYCTLLASAQSEAEK	1	Unmodified	2057.9836	0.98356994	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.04	85.32	3	0.00013572	48582	160513_QHF_FH_JSI10Kac_6	120.37	104.06			0.069342	0.080252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.069342	0.080252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55547000	49681000	5865700	0	0	0	55547000	49681000	5865700	0	0	0	0	0	0	36970	552	34851	227154	305943	305943			1	
MMIPDCQR	0	Unmodified	1049.4456	0.4456415	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	3	2	32.165	30.404	2	0.0003358	27095	160511_QHF_FH_JSI11i_1	111.65	94.283			0.90878	0.91454	32.899	9	0	Median	0.95758	0.8075	18.313	2	0	Median	0.8052	0.96751	33.319	2	0	Median	0.76146	0.77062	38.173	3	0	Median	1.1086	1.1884	11.817	2	0	Median	1452700000	730230000	722480000	184200000	80695000	103510000	337210000	174240000	162970000	534510000	300420000	234100000	396790000	174870000	221910000	36971	505	34852	227155;227156;227157;227158;227159;227160;227161;227162;227163;227164	305944;305945;305946;305947;305948;305949;305950;305951;305952;305953;305954;305955;305956;305957;305958	305944			15	
MMIPDCQRR	0	Unmodified	1205.5468	0.54675253	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.646	22.349	3	0.007425	17969	160511_QHF_FH_JSI9i_3	35.224	33.637			1.8643	1.5401	NaN	1	0	Median	1.8643	1.5401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18777000	8479000	10298000	18777000	8479000	10298000	0	0	0	0	0	0	0	0	0	36972	505	34853	227165	305959	305959			1	
MMITSQDVLHSWAVPTLGLK	1	Unmodified	2226.1541	0.15408116	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	6.2		7	3						4	3	4	4	3	98.002	95.368	2;3	8.0688E-185	86838	160511_QHF_FH_JSI12i_2	348.5	328.66			1.0054	1.1698	23.611	13	1	Median	1.134	0.94481	38.943	2	0	Median	0.9025	1.0733	24.46	4	1	Median	1.3091	1.2788	28.183	4	0	Median	0.96745	1.0653	15.596	3	0	Median	7244800000	3293600000	3951100000	1272700000	504770000	767920000	1367500000	646480000	721000000	2936800000	1309900000	1626800000	1667800000	832470000	835360000	36973	767	34854	227166;227167;227168;227169;227170;227171;227172;227173;227174;227175;227176;227177;227178;227179	305960;305961;305962;305963;305964;305965;305966;305967;305968;305969;305970;305971;305972;305973;305974;305975;305976;305977;305978;305979;305980;305981;305982	305964			22	
MMKDLEALMFDR	1	Acetyl (K)	1540.7088	0.70879206	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.799	80.451	2	0.00029049	45002	160513_QHF_FH_JSI11Kac_6	92.295	77.876			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19809000	19809000	0	0	0	0	0	0	0	19809000	19809000	0	0	0	0	36974	1460	34855	227180	305983	305983	1444		1	
MMLAQAQESVFEK	1	Unmodified	1510.716	0.71598593	3393	Q8IUC4	RHPN2	Rhophilin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.155	74.514	2	0.0023888	40852	160513_QHF_FH_JSI10Kac_6	77.379	58.136			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36975	3393	34856	227181	305984	305984			1	
MMLDDIVSR	0	Unmodified	1078.5151	0.51510128	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	61.558	60.959	2	3.6366E-06	55203	160511_QHF_FH_JSI10i_1	122.19	101.63			0.92332	0.95879	12.36	9	0	Median	1.1269	0.95879	NaN	1	0	Median	0.85147	1.0118	9.8294	2	0	Median	1.0475	1.0945	20.075	3	0	Plateau	0.87137	0.97752	8.6806	3	0	Plateau	2372700000	1174100000	1198500000	325100000	150770000	174330000	560320000	305140000	255180000	927740000	419100000	508640000	559510000	299130000	260380000	36976	3911	34857	227182;227183;227184;227185;227186;227187;227188;227189;227190	305985;305986;305987;305988;305989;305990;305991;305992;305993;305994;305995;305996;305997;305998	305992			14	
MMLENLQQR	0	Unmodified	1161.5634	0.56344845	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.215	42.246	2	0.037029	37365	160511_QHF_FH_JSI10i_2	46.813	34.606			1.0823	1.2409	68.863	4	4	Median	2.9826	2.6331	NaN	1	1	Median	0.70867	0.86583	NaN	1	1	Median	0.58127	0.57276	NaN	1	1	Median	1.6528	1.7783	NaN	1	1	Median	139740000	61871000	77868000	27984000	4918500	23066000	32419000	16532000	15887000	47212000	28113000	19098000	32125000	12307000	19817000	36977	4829	34858	227191;227192;227193;227194	305999;306000;306001;306002	306002			4	
MMLEQER	0	Unmodified	935.42047	0.42047261	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	21.51	20.684	2	0.0047315	17095	160511_QHF_FH_JSI12i_2	97.473	68.135			0.97623	0.9668	31.02	4	1	Median	1.2717	1.1163	NaN	1	0	Median	0.63139	0.77066	NaN	1	1	Median	1.53	1.5275	NaN	1	0	Median	0.74944	0.83731	NaN	1	0	Median	640880000	324760000	316120000	132190000	55287000	76908000	137670000	68643000	69023000	203000000	104410000	98591000	168020000	96419000	71597000	36978	1400	34859	227195;227196;227197;227198	306003;306004;306005;306006;306007	306003			5	
MMLGPEGGEGFVVK	1	Acetyl (Protein N-term)	1491.7102	0.71017227	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	95.278	94.983	2	4.0858E-13	84255	160511_QHF_FH_JSI9i_1	116.23	105.71			1.2761	1.327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2761	1.327	NaN	1	0	Median	51098000	26291000	24807000	0	0	0	0	0	0	0	0	0	51098000	26291000	24807000	36979	1775	34860	227199;227200	306008;306009;306010	306010			3	
MMLGTEGGEGFVVK	1	Acetyl (Protein N-term)	1495.7051	0.70508689	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	2	1	92.775	92.392	2	8.8241E-31	84060	160511_QHF_FH_JSI11i_1	129.16	101.14			1.0355	0.89319	11.524	4	0	Linear	1.0313	0.83857	NaN	1	0	Median	0.80222	0.96922	NaN	1	0	Median	1.0986	1.0607	NaN	1	0	Median	1.0397	1.0785	NaN	1	0	Median	2352800000	1154300000	1198500000	653230000	318830000	334400000	652390000	361290000	291100000	557420000	254840000	302580000	489790000	219320000	270470000	36980	1383	34861	227201;227202;227203;227204;227205;227206	306011;306012;306013;306014;306015;306016;306017;306018;306019;306020;306021	306012			11	
MMLGTEGGEGFVVK	1	Acetyl (Protein N-term);Oxidation (M)	1511.7	0.70000151	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	78.377	77.895	2	1.1232E-06	69502	160511_QHF_FH_JSI12i_1	121.36	113.44			1.288	1.4396	51.66	5	4	Median	0.66905	0.54269	NaN	1	1	Median	1.288	1.4396	NaN	1	1	Median	1.9714	1.8833	NaN	1	1	Median	1.4833	1.5467	31.1	2	1	Median	189650000	72220000	117430000	24443000	18282000	6160800	33069000	9952300	23116000	40021000	6547600	33473000	92123000	37438000	54684000	36981	1383	34861	227207;227208;227209;227210;227211	306022;306023;306024;306025;306026	306023		1019;1020	4	
MMLGTEGGEGFVVK	1	Acetyl (Protein N-term);2 Oxidation (M)	1527.6949	0.69491614	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	1	2	0			By MS/MS	By MS/MS	12.2	0.748				1	2	2						2	3	72.507	63.654	2	0.00014027	27690	160513_QHF_FH_JSI12Kac_2	48.741	34.534			1.1414	1.1574	3.019	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1956	1.1365	NaN	1	0	Median	1.1276	1.1812	2.8787	2	0	Median	10120000	4211300	5908400	0	0	0	0	0	0	2433000	905490	1527500	7686700	3305800	4380900	36982	1383	34861	227212;227213;227214;227215;227216	306027;306028;306029;306030;306031	306031		1019;1020	5	
MMLHAFYLR	0	Unmodified	1180.5885	0.58854099	5344	Q9UJJ7	RPUSD1	RNA pseudouridylate synthase domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	70.049	61.419	2;3	0.0003917	32354	160513_QHF_FH_JSI12Kac_6	79.906	79.906			0.99214	0.80962	17.715	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.72475	0.85585	29.691	2	1	Median	0.84676	0.77931	NaN	1	0	Median	0.77834	0.8411	NaN	1	0	Median	319840000	157260000	162580000	0	0	0	235020000	111900000	123110000	60220000	31197000	29023000	24602000	14159000	10443000	36983	5344	34862	227217;227218;227219;227220	306032;306033;306034;306035;306036;306037	306034			6	
MMLHAFYLR	0	Oxidation (M)	1196.5835	0.58345561	5344	Q9UJJ7	RPUSD1	RNA pseudouridylate synthase domain-containing protein 1	yes	yes	0	0	1	0			By MS/MS	By matching	16	0									2			1	1	65.944	56.192	3	0.014125	30512	160513_QHF_FH_JSI11Kac_6	47.198	38.009			0.98269	0.99623	15.012	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1637	1.1078	NaN	1	0	Median	0.82981	0.8959	NaN	1	0	Median	16070000	8805100	7264900	0	0	0	0	0	0	9655300	5407300	4248000	6414600	3397800	3016900	36984	5344	34862	227221;227222	306038	306038		2633	0	
MMLIPMASVMAVTEPK	1	Acetyl (Protein N-term);2 Oxidation (M)	1821.8749	0.87487111	4466	Q9BVA6	FICD	Adenosine monophosphate-protein transferase FICD	yes	yes	0	1	2	0				By MS/MS	1	0	1												1	98.782	98.614	2	0.012153	89407	160511_QHF_FH_JSI12i_1	33.886	10.035			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36985	4466	34863	227223	306039	306039		2476;2477;2478;2479	1	
MMLMSTATAFYR	0	Oxidation (M)	1437.6455	0.64546352	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	6.21		4	4					1	17	6	7	7	6	71.927	65.496	2	1.7477E-39	32755	160513_QHF_FH_JSI9Kac_6	192.92	181.75			1.0188	1.0564	10.822	24	0	Median	1.1742	1.005	12.194	5	0	Median	0.89425	1.0404	6.4787	6	0	Median	1.1328	1.0804	13.111	7	0	Median	0.95767	1.0249	9.8672	6	0	Median	1773500000	871720000	901830000	357170000	147740000	209430000	668120000	354250000	313870000	407790000	188320000	219470000	340460000	181400000	159060000	36986	976	34864	227224;227225;227226;227227;227228;227229;227230;227231;227232;227233;227234;227235;227236;227237;227238;227239;227240;227241;227242;227243;227244;227245;227246;227247;227248;227249	306040;306041;306042;306043;306044;306045;306046;306047;306048;306049;306050;306051;306052;306053;306054;306055;306056;306057;306058;306059;306060;306061;306062;306063;306064;306065;306066;306067;306068;306069;306070;306071;306072;306073;306074;306075;306076;306077;306078;306079;306080;306081;306082;306083	306062		537;538;539	43	
MMLMSTATAFYR	0	Unmodified	1421.6505	0.6505489	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	78.517	75.036	2;3	2.6436E-50	39976	160513_QHF_FH_JSI10Kac_6	214.83	197.01			1.0362	1.0566	18.869	13	0	Median	1.1227	0.94339	25.568	3	0	Median	0.97639	1.1388	15.868	4	0	Median	1.2641	1.2075	11.543	3	0	Median	0.77821	0.82559	15.461	3	0	Median	6813400000	3328200000	3485200000	1232100000	522790000	709310000	2661200000	1354900000	1306200000	1596100000	780390000	815680000	1324000000	670090000	653930000	36987	976	34864	227250;227251;227252;227253;227254;227255;227256;227257;227258;227259;227260;227261;227262	306084;306085;306086;306087;306088;306089;306090;306091;306092;306093;306094;306095;306096;306097;306098;306099;306100;306101;306102;306103;306104;306105;306106;306107	306106			23	
MMLMSTATAFYR	0	3 Oxidation (M)	1469.6353	0.63529277	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	3	0	By MS/MS		By MS/MS		15	0								3		2		1		52.747	42.156	2	0.0008945	22880	160513_QHF_FH_JSI9Kac_5	60.434	55.821			1.2663	1.1111	7.7491	3	1	Median	1.3062	1.069	5.4667	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2663	1.2009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9741800	4034800	5707000	7393400	3280900	4112500	0	0	0	2348400	753930	1594500	0	0	0	36988	976	34864	227263;227264;227265	306108;306109;306110;306111	306110		537;538;539	4	
MMLMSTATAFYR	0	2 Oxidation (M)	1453.6404	0.64037815	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								12	16	11	4	6	7	65.504	55.55	2	3.6218E-05	30315	160513_QHF_FH_JSI10Kac_6	90.108	88.355			1.2902	1.1985	15.504	25	4	Median	1.464	1.2592	11.61	10	2	Median	0.98029	1.1641	6.1041	4	1	Median	1.2713	1.1985	12.229	5	0	Median	0.88714	0.96383	22.768	6	1	Median	224770000	100700000	124070000	100520000	37756000	62763000	56166000	29595000	26571000	26669000	12618000	14051000	41414000	20733000	20681000	36989	976	34864	227266;227267;227268;227269;227270;227271;227272;227273;227274;227275;227276;227277;227278;227279;227280;227281;227282;227283;227284;227285;227286;227287;227288;227289;227290;227291;227292;227293	306112;306113;306114;306115;306116;306117;306118;306119;306120;306121;306122;306123;306124;306125;306126;306127;306128;306129;306130;306131;306132;306133;306134;306135;306136;306137	306136		537;538;539	26	
MMLSGGAPLSPQTHR	0	Unmodified	1581.7756	0.77556649	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							4	5	1	2	44.116	43.006	2;3	2.0473E-16	35968	160511_QHF_FH_JSI10i_3	118.48	100.67			0.87719	0.86168	48.898	8	1	Median	1.4925	1.2147	44.448	3	1	Median	0.77348	0.90579	61.322	3	0	Median	0.80484	0.81494	NaN	1	0	Median	0.59381	0.5981	NaN	1	0	Median	762280000	413830000	348450000	248040000	108690000	139360000	373690000	222280000	151410000	57159000	36021000	21137000	83394000	46843000	36551000	36990	418	34865	227294;227295;227296;227297;227298;227299;227300;227301;227302;227303;227304;227305	306138;306139;306140;306141;306142;306143;306144;306145;306146;306147;306148;306149;306150;306151;306152;306153;306154	306142			16	
MMLSTEGR	0	Acetyl (Protein N-term)	965.43104	0.4310373	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		4	5.2	3					1				1	1	2		50.75	50.07	2	0.0004655	45116	160511_QHF_FH_JSI10i_1	100.45	64.571			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36991	1864	34866	227306;227307;227308;227309	306155;306156;306157;306158	306157			4	
MMLTHLVVRPGLGSK	1	Unmodified	1637.9109	0.91093776	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	65.962	56.92	3;4	2.0969E-11	31154	160513_QHF_FH_JSI10Kac_6	127.07	118.47			0.8929	0.84379	16.538	7	0	Median	0.94352	0.81091	5.6211	2	0	Median	0.67215	0.79111	7.2725	2	0	Median	1.0119	0.98956	NaN	1	0	Median	0.95154	1.0399	22.557	2	0	Median	554450000	301370000	253080000	123280000	61756000	61524000	357610000	204420000	153190000	39972000	21744000	18227000	33592000	13451000	20140000	36992	2578;2318	34867	227310;227311;227312;227313;227314;227315;227316	306159;306160;306161;306162;306163;306164;306165;306166	306165			8	
MMMQSGR	0	Unmodified	839.3452	0.34519918	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	6	5	5	12.258	8.1513	2	1.7224E-05	8068	160511_QHF_FH_JSI11i_3	141.98	133.75			0.89175	0.9491	19.36	20	0	Median	1.1953	1.0161	17.321	4	0	Median	0.8397	0.9846	26.464	6	0	Median	0.88042	0.83348	18.594	5	0	Median	0.83939	0.94685	5.6097	5	0	Median	18302000000	8384900000	9917000000	3087700000	1153200000	1934500000	4386500000	2251900000	2134600000	5697000000	2737900000	2959100000	5130700000	2241900000	2888800000	36993	1014;826;1013	34868	227317;227318;227319;227320;227321;227322;227323;227324;227325;227326;227327;227328;227329;227330;227331;227332;227333;227334;227335;227336	306167;306168;306169;306170;306171;306172;306173;306174;306175;306176;306177;306178;306179;306180;306181;306182;306183;306184;306185;306186;306187;306188;306189;306190;306191;306192;306193	306167			27	
MMMQSGR	0	Oxidation (M)	855.34011	0.3401138	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.65	1	8					1			1	1	5	3	7.7724	6.662	2	0.010392	2806	160511_QHF_FH_JSI11i_2	89.427	78.312			0.92487	0.95791	36.095	10	0	Median	1.2848	1.0974	NaN	1	0	Median	2.0802	2.5256	NaN	1	0	Median	0.98738	1.0148	24.454	5	0	Median	0.81209	0.90324	10.057	3	0	Median	2596500000	1269700000	1326800000	55498000	22370000	33129000	259970000	85084000	174890000	1035500000	525440000	510090000	1245500000	636790000	608680000	36994	1014;826;1013	34868	227337;227338;227339;227340;227341;227342;227343;227344;227345;227346	306194;306195;306196;306197;306198;306199	306199		350	6	
MMMQSGR	0	3 Oxidation (M)	887.32994	0.32994304	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	3	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	10.76	10.276	2	0.052406	7823	160511_QHF_FH_JSI12i_2	41.652	41.652			1.0196	1.1454	59.321	3	0	Plateau	3.7836	3.1686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1362	1.1232	NaN	1	0	Median	1.0196	1.1454	NaN	1	0	Median	251610000	93188000	158420000	73704000	15287000	58417000	0	0	0	82675000	37305000	45370000	95230000	40596000	54634000	36995	1014;826;1013	34868	227347;227348;227349	306200;306201	306200		350	2	
MMMQSGRK	1	Unmodified	967.44016	0.4401622	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	1			By MS/MS		3	0			1									1		6.7959	6.7959	2	0.0091086	4559	160511_QHF_FH_JSI11i_3	64.567	41.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36996	1014;826;1013	34869	227350	306202	306202			1	
MMMVLGAK	1	Unmodified	879.43804	0.43803693	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	4	2	2	2	50.62	48.609	2	0.0040515	42643	160511_QHF_FH_JSI9i_2	76.847	52.874			3.9707	3.3213	101.52	9	9	Median	3.0758	2.5736	133.23	4	4	Median	2.5405	3.0109	9.6545	2	2	Median	3.9867	4.0378	NaN	1	1	Median	7.2516	7.8141	60.614	2	2	Median	314800000	121330000	193470000	79793000	28082000	51711000	75704000	32518000	43186000	83878000	36301000	47577000	75422000	24425000	50997000	36997	2578	34870	227351;227352;227353;227354;227355;227356;227357;227358;227359;227360	306203;306204;306205;306206;306207;306208;306209;306210;306211;306212	306208			10	
MMNGGHYTYSENR	0	Unmodified	1558.6293	0.62929619	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	2	1	19.557	17.185	2;3	8.7416E-08	14260	160511_QHF_FH_JSI11i_3	100.88	94.345			0.93073	0.90788	5.7364	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91304	0.87179	NaN	1	0	Median	0.94877	0.94546	NaN	1	0	Median	144190000	75023000	69171000	0	0	0	1441700	1441700	0	81503000	40687000	40816000	61249000	32894000	28355000	36998	4276	34871	227361;227362;227363;227364	306213;306214;306215;306216;306217;306218	306215			6	
MMNGGHYTYSENRVEK	1	Unmodified	1914.8353	0.83526622	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.85	0.357		3	17							7	11	2		22.868	21.797	3;4	3.0909E-06	17075	160511_QHF_FH_JSI9i_3	119.56	108.92			0.89986	0.83919	41.948	18	2	Median	1.605	1.341	39.251	7	2	Median	0.61216	0.70192	37.845	9	0	Median	0.79103	0.74974	7.7709	2	0	Median	NaN	NaN	NaN	0	0	Median	1245100000	630240000	614810000	452060000	168210000	283850000	581320000	344200000	237120000	211670000	117820000	93841000	0	0	0	36999	4276	34872	227365;227366;227367;227368;227369;227370;227371;227372;227373;227374;227375;227376;227377;227378;227379;227380;227381;227382;227383;227384	306219;306220;306221;306222;306223;306224;306225;306226;306227;306228;306229;306230;306231;306232;306233;306234;306235;306236;306237;306238;306239;306240;306241;306242;306243;306244;306245;306246;306247;306248	306238			29	
MMNGGHYTYSENRVEK	1	Oxidation (M)	1930.8302	0.83018084	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	1	1	By MS/MS	By matching			3	0			2							1	1			17.357	16.295	4	0.00091181	12977	160511_QHF_FH_JSI9i_3	53.777	49.535			1.4247	1.3783	7.5393	2	0	Median	1.7677	1.4537	NaN	1	0	Median	1.1483	1.3067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74474000	29383000	45091000	40339000	12840000	27499000	34135000	16543000	17592000	0	0	0	0	0	0	37000	4276	34872	227385;227386	306249	306249		2428	1	
MMNTIIFHTK	1	Unmodified	1234.6202	0.62023505	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	1	3	5	5	55.386	49.173	2;3	4.2386E-09	26966	160513_QHF_FH_JSI10Kac_6	127.76	114.73			0.84075	0.79778	62.349	13	12	Median	0.64769	0.56165	NaN	1	1	Median	0.42577	0.51414	76.928	3	3	Plateau	1.3893	1.4046	64.225	5	5	Median	0.82224	0.83406	65.409	4	3	Median	1038200000	488640000	549550000	84331000	43920000	40411000	189090000	109150000	79937000	387670000	145050000	242630000	377100000	190520000	186580000	37001	5507	34873	227387;227388;227389;227390;227391;227392;227393;227394;227395;227396;227397;227398;227399;227400	306250;306251;306252;306253;306254;306255;306256;306257;306258;306259;306260;306261;306262;306263;306264	306263			15	
MMPTPVILLK	1	Acetyl (Protein N-term);Oxidation (M)	1199.6658	0.66578826	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5.3	10			1	2	2				4	3	2	6	95.443	92.473	2	1.5273E-05	90595	160511_QHF_FH_JSI10i_1	92.439	82.658			0.87993	0.93329	152.16	12	4	Median	1.1432	0.92753	170.61	3	1	Median	0.75005	0.89206	153.38	3	1	Median	0.20012	0.1922	227.25	2	1	Median	0.94475	1.0023	171.53	4	1	Median	402540000	238120000	164420000	115000000	63987000	51015000	86146000	53791000	32355000	98226000	59106000	39121000	103170000	61239000	41926000	37002	4321	34874	227401;227402;227403;227404;227405;227406;227407;227408;227409;227410;227411;227412;227413;227414;227415	306265;306266;306267;306268;306269;306270;306271;306272;306273;306274;306275;306276;306277;306278;306279;306280;306281;306282	306272		2444;2445	18	
MMPTPVILLK	1	Acetyl (Protein N-term)	1183.6709	0.67087364	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	102.35	102.25	2	1.7277E-05	90431	160511_QHF_FH_JSI9i_1	92.439	75.054			1.0072	0.9993	3.8434	4	0	Median	1.1308	0.96001	NaN	1	0	Median	0.8353	1.0045	NaN	1	0	Median	1.0188	0.99415	NaN	1	0	Median	0.99577	1.0537	NaN	1	0	Median	12760000000	6209600000	6550000000	3663400000	1685000000	1978400000	2507800000	1334900000	1172900000	3758200000	1827900000	1930300000	2830200000	1361800000	1468400000	37003	4321	34874	227416;227417;227418;227419	306283;306284;306285;306286;306287;306288	306288			6	
MMPTPVILLK	1	Unmodified	1141.6603	0.66030895	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	86.268	85.463	2	0.002265	73929	160511_QHF_FH_JSI12i_2	60.91	50.679			1.0618	1.1089	3.0332	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1363	1.1329	NaN	1	0	Median	0.99223	1.0853	NaN	1	0	Median	49694000	25101000	24593000	0	0	0	0	0	0	31338000	15451000	15887000	18356000	9649900	8705700	37004	4321	34874	227420;227421	306289;306290	306289			2	
MMPTPVILLK	1	Acetyl (Protein N-term);2 Oxidation (M)	1215.6607	0.66070288	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	1	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.31	4.61	3			5	2	3				2	4	2	5	82.012	74.817	2	0.00041708	30650	160513_QHF_FH_JSI10Kac_2	58.676	42.473			0.87311	1.0006	20.094	7	1	Median	NaN	NaN	NaN	0	0	Median	0.79113	0.93217	26.399	4	1	Median	0.87311	0.87003	NaN	1	0	Median	1.0026	1.0608	7.6691	2	0	Median	51443000	26506000	24937000	1354000	0	1354000	18970000	10391000	8579000	7739200	4879200	2859900	23379000	11235000	12144000	37005	4321	34874	227422;227423;227424;227425;227426;227427;227428;227429;227430;227431;227432;227433;227434	306291;306292;306293;306294;306295;306296;306297;306298;306299;306300;306301;306302;306303	306297		2444;2445	13	
MMQAEEAPK	1	Unmodified	1033.4573	0.45725205	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	14.713	14.453	2	0.00018396	12216	160511_QHF_FH_JSI12i_1	103.74	81.608			0.99749	1.0879	32.604	4	4	Median	NaN	NaN	NaN	0	0	Median	0.77319	0.91402	41.063	2	2	Median	1.4679	1.4531	NaN	1	1	Median	0.95123	0.96849	NaN	1	1	Median	498470000	261200000	237270000	0	0	0	236240000	141930000	94310000	129490000	48387000	81100000	132730000	70878000	61855000	37006	2142	34875	227435;227436;227437;227438;227439	306304;306305;306306;306307;306308	306305			5	
MMQEQMTGAAMAMPADTNK	1	Unmodified	2055.8556	0.85560901	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	56.375	55.72	2;3	1.2084E-32	49434	160511_QHF_FH_JSI9i_1	152.34	139.57			1.0957	1.1982	29.103	4	2	Median	0.91182	0.78373	NaN	1	0	Median	0.97243	1.0933	NaN	1	0	Median	1.5709	1.5443	NaN	1	1	Median	1.2346	1.3131	NaN	1	1	Median	137730000	57588000	80137000	37289000	13964000	23325000	33466000	17616000	15850000	44789000	14660000	30129000	22182000	11349000	10833000	37007	5179	34876	227440;227441;227442;227443;227444;227445;227446	306309;306310;306311;306312;306313;306314;306315;306316	306316			8	
MMQGEAHPSASLIDR	0	Acetyl (Protein N-term)	1683.7709	0.77087505	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	1	0	0	By MS/MS			By MS/MS	2	0		2								1			1	57.55	56.197	2	0.0002137	49395	160511_QHF_FH_JSI9i_2	67.153	60.025			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37008	4244	34877	227447;227448	306317;306318	306318			2	
MMQGGVGIPTIR	0	Unmodified	1258.6526	0.65259781	1634	P48730	CSNK1D	Casein kinase I isoform delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	59.444	58.539	2	0.00062869	51794	160511_QHF_FH_JSI10i_2	82.008	62.737			0.911	1.0323	3.1759	3	3	Median	NaN	NaN	NaN	0	0	Median	0.87568	1.0665	NaN	1	1	Median	1.0565	1.0323	NaN	1	1	Median	0.911	1.0009	NaN	1	1	Median	106890000	48194000	58700000	0	0	0	35786000	14489000	21297000	49134000	23111000	26023000	21974000	10594000	11380000	37009	1634	34878	227449;227450;227451	306319;306320;306321;306322	306322			4	
MMQINLTGFLNGK	1	Unmodified	1465.7421	0.7421411	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	96.729	96.745	2	0.00011893	83918	160511_QHF_FH_JSI12i_3	106.29	93.715			0.89532	0.9012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89532	0.9012	NaN	1	0	Median	54922000	33574000	21348000	0	0	0	0	0	0	0	0	0	54922000	33574000	21348000	37010	3463	34879	227452;227453	306323;306324	306324			2	
MMQPFNKPSGTFIK	2	Unmodified	1624.8106	0.81055502	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.128	56.099	2;3	9.9733E-05	49645	160511_QHF_FH_JSI11i_3	83.087	78.54			1.1931	0.70829	39.531	3	1	Plateau	0.86351	0.69974	NaN	1	0	Median	0.60544	0.70829	NaN	1	1	Median	1.452	1.3961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1125800000	543790000	582000000	390340000	209240000	181100000	282280000	150600000	131680000	453170000	183950000	269220000	0	0	0	37011	2880	34880	227454;227455;227456;227457	306325;306326;306327;306328;306329;306330	306326			6	
MMQPFNKPSGTFIK	2	Acetyl (K)	1666.8211	0.8211197	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	78.514	69.136	2	0.00017227	37867	160513_QHF_FH_JSI11Kac_6	95.401	84.943			0.73843	0.76103	27.037	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94415	0.92137	NaN	1	0	Median	0.57753	0.6286	NaN	1	0	Median	53636000	27715000	25921000	0	0	0	0	0	0	31646000	14884000	16762000	21990000	12831000	9158900	37012	2880	34880	227458;227459	306331;306332	306332	2706		2	
MMRPVSDQVQIK	1	Unmodified	1430.7374	0.73739007	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							4	4	4	1	36.544	35.755	2;3	0.00015394	29028	160511_QHF_FH_JSI9i_3	71.085	54.947			1.0036	0.82864	98.954	10	7	Median	1.0216	0.81674	19.266	3	0	Plateau	1.2086	1.4301	45.406	4	4	Median	0.14977	0.13815	109.15	2	2	Median	0.43783	0.43592	NaN	1	1	Median	1190400000	600860000	589510000	605600000	251820000	353780000	363040000	194640000	168400000	193730000	133400000	60329000	27995000	20997000	6998200	37013	3959	34881	227460;227461;227462;227463;227464;227465;227466;227467;227468;227469;227470;227471;227472	306333;306334;306335;306336;306337;306338;306339;306340;306341;306342;306343;306344;306345;306346;306347;306348	306341			16	
MMRPVSDQVQIK	1	Oxidation (M)	1446.7323	0.7323047	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				31.518	30.113	3	0.021547	24460	160511_QHF_FH_JSI9i_3	41.644	35.063			1.773	1.4107	NaN	1	0	Median	1.773	1.4107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52036000	19930000	32106000	52036000	19930000	32106000	0	0	0	0	0	0	0	0	0	37014	3959	34881	227473	306349	306349			1	
MMSNQYVPVK	1	Unmodified	1195.573	0.57295051	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.278	38.826	2	0.027849	33238	160511_QHF_FH_JSI11i_2	47.823	27.494			1.1846	1.2021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1846	1.2021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19524000	6843800	12680000	0	0	0	0	0	0	19524000	6843800	12680000	0	0	0	37015	4561	34882	227474	306350	306350			1	
MMSTGSKK	2	Unmodified	868.41466	0.41465895	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.544	4.6364	2	0.013068	2123	160511_QHF_FH_JSI12i_3	69.998	43.89			0.25543	0.25266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25543	0.25266	NaN	1	1	Median	27770000	24094000	3676300	0	0	0	0	0	0	0	0	0	27770000	24094000	3676300	37016	594	34883	227475	306351	306351			1	
MMTPEVLAEAYGK	1	Unmodified	1438.6836	0.68362317	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	2	3	74.595	73.899	2	1.2357E-05	64860	160511_QHF_FH_JSI11i_2	123.8	109.38			1.3012	1.3609	17.822	7	5	Median	1.352	1.1265	NaN	1	1	Median	1.1379	1.3734	NaN	1	1	Median	1.303	1.276	20.387	2	1	Median	1.3012	1.3609	25.27	3	2	Median	395340000	182980000	212370000	63506000	27463000	36043000	63011000	33692000	29319000	184430000	80349000	104080000	84395000	41471000	42924000	37017	2970	34884	227476;227477;227478;227479;227480;227481;227482;227483	306352;306353;306354;306355;306356;306357;306358;306359	306358			8	
MMTPEVLAEAYGKK	2	Unmodified	1566.7786	0.77858619	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			65.69	64.855	3	0.0014734	57485	160511_QHF_FH_JSI10i_2	52.966	41.352			0.50868	0.62104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50868	0.62104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38087000	19632000	18454000	0	0	0	38087000	19632000	18454000	0	0	0	0	0	0	37018	2970	34885	227484	306360	306360			1	
MMVADVFSHR	0	Unmodified	1191.5529	0.55288377	1751	P51784	USP11	Ubiquitin carboxyl-terminal hydrolase 11	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	53.991	53.394	3	0.00032357	45667	160511_QHF_FH_JSI12i_3	56.359	51.566			1.3238	1.1877	14.939	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0212	1.1877	NaN	1	0	Median	1.197	1.0851	NaN	1	0	Median	1.3986	1.4528	NaN	1	0	Median	83724000	37455000	46269000	0	0	0	10415000	4372500	6042100	33224000	15664000	17560000	40086000	17419000	22667000	37019	1751	34886	227485;227486;227487;227488	306361;306362;306363;306364	306363			4	
MMVAGFK	1	Unmodified	782.3819	0.38190226	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							4	3	4	1	40.13	39.252	2	0.0099829	32175	160511_QHF_FH_JSI9i_3	66.994	50.067			1.2052	1.0009	81.086	11	9	Median	1.2052	0.9635	90.802	3	2	Median	0.43743	0.51329	106.65	3	3	Median	2.1692	2.0936	72.16	4	4	Median	0.908	1.0009	NaN	1	0	Median	4964700000	2407100000	2557600000	1010200000	473690000	536510000	1058000000	591440000	466610000	2294500000	1050600000	1244000000	601900000	291400000	310490000	37020	2161	34887	227489;227490;227491;227492;227493;227494;227495;227496;227497;227498;227499;227500	306365;306366;306367;306368;306369;306370;306371;306372;306373;306374;306375;306376	306370			12	
MMVAGFKK	2	Unmodified	910.47687	0.47686528	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			16						8	8	5	6	5	31.166	27.603	2;3	0.0017183	22554	160511_QHF_FH_JSI9i_3	86.113	32.647			1.8562	1.925	170.87	24	22	Median	1.1553	0.9969	262.09	8	7	Median	1.4306	1.655	140.63	5	4	Median	1.9704	1.8666	114.85	6	6	Median	2.0976	2.2523	100.34	5	5	Median	32567000000	13462000000	19105000000	6196300000	2576000000	3620200000	5660000000	2698900000	2961200000	6083200000	2051200000	4031900000	14628000000	6135800000	8492000000	37021	2161	34888	227501;227502;227503;227504;227505;227506;227507;227508;227509;227510;227511;227512;227513;227514;227515;227516;227517;227518;227519;227520;227521;227522;227523;227524	306377;306378;306379;306380;306381;306382;306383;306384;306385;306386;306387;306388;306389;306390;306391;306392;306393;306394;306395;306396;306397;306398;306399;306400;306401	306387			25	
MMVAGFKK	2	2 Oxidation (M)	942.46669	0.46669452	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	2	3	22.266	21.714	2;3	0.0053524	22720	160511_QHF_FH_JSI10i_3	51.854	24.33			1.8122	1.7435	98.804	9	6	Median	2.6199	2.1629	34.633	3	2	Median	1.5861	1.8393	40.755	2	2	Median	1.8122	1.7435	NaN	1	1	Median	0.32277	0.3284	180.51	3	1	Plateau	1641700000	885110000	756560000	227910000	75050000	152860000	245030000	87011000	158020000	241670000	114780000	126900000	927050000	608270000	318780000	37022	2161	34888	227525;227526;227527;227528;227529;227530;227531;227532;227533;227534	306402;306403;306404;306405;306406;306407;306408;306409;306410;306411	306405		1812;1813	9	
MMVAGFKK	2	Oxidation (M)	926.47178	0.4717799	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	23.762	23.127	2;3	0.0080698	17814	160511_QHF_FH_JSI10i_3	43.808	16.283			0.95291	0.92627	179.96	6	6	Median	10.61	8.683	207.16	2	2	Median	0.35475	0.41015	NaN	1	1	Median	0.549	0.51479	NaN	1	1	Median	0.65882	0.67138	128.59	2	2	Median	868030000	523030000	345010000	133670000	28783000	104880000	124860000	73804000	51060000	215340000	123400000	91945000	394160000	297040000	97119000	37023	2161	34888	227535;227536;227537;227538;227539;227540;227541	306412;306413;306414;306415;306416;306417;306418	306414		1812;1813	7	
MMVANKPDK	2	Unmodified	1032.5096	0.50962197	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	11.515	11.305	2;3	0.00019749	8821	160511_QHF_FH_JSI11i_3	127.02	102.13			3.6955	3.3016	136.01	6	6	Median	2.3444	2.0219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.8252	5.3912	115.57	3	3	Median	1.1194	1.1579	231.04	2	2	Median	947440000	324060000	623380000	43232000	17662000	25569000	0	0	0	783470000	276740000	506730000	120740000	29660000	91083000	37024	444	34889	227542;227543;227544;227545;227546;227547;227548	306419;306420;306421;306422;306423;306424;306425	306420			7	
MMVEHLLR	0	Unmodified	1027.5307	0.53069176	3235	Q7L5Y9	MAEA	Macrophage erythroblast attacher	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	45.457	44.065	3	0.00648	37681	160511_QHF_FH_JSI12i_2	57.047	47.833			0.32271	0.34918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32271	0.34918	NaN	1	1	Median	8065100	6001200	2063800	0	0	0	0	0	0	0	0	0	8065100	6001200	2063800	37025	3235	34890	227549;227550	306426;306427	306426			2	
MMVMVTASGK	1	Unmodified	1053.5021	0.50209375	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	4.63		1							7	2	2	2	2	48.857	40.693	2	0.00013701	22424	160513_QHF_FH_JSI10Kac_6	95.502	66.353			1.494	1.4509	42.417	8	5	Median	2.4096	2.0548	39.211	2	1	Median	1.3914	1.6367	27.048	2	2	Median	1.925	1.8816	55.465	2	1	Median	0.87595	0.96802	20.831	2	1	Median	177440000	57104000	120330000	46042000	11890000	34152000	68295000	21842000	46452000	55906000	19514000	36391000	7194200	3857800	3336400	37026	3562	34891	227551;227552;227553;227554;227555;227556;227557;227558	306428;306429;306430;306431;306432;306433;306434;306435	306435			8	
MNAEFIMLNHFSQR	0	Unmodified	1736.8127	0.81268028	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	1	3	1	77.726	69.137	2;3	1.2236E-11	37028	160513_QHF_FH_JSI9Kac_6	125.33	113.42			1.0777	1.0337	24.234	5	1	Median	1.4019	1.1721	NaN	1	0	Median	1.3817	1.6396	NaN	1	1	Median	1.0428	1.014	2.714	2	0	Median	0.82371	0.86407	NaN	1	0	Median	346090000	151760000	194340000	134470000	49408000	85066000	37959000	13673000	24286000	125680000	62637000	63047000	47977000	26040000	21937000	37027	4348	34892	227559;227560;227561;227562;227563;227564	306436;306437;306438;306439;306440;306441;306442	306440			7	
MNAGSDPVVIVSAAR	0	Acetyl (Protein N-term)	1527.7715	0.77152697	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.326	76.848	2	1.1191E-07	69658	160511_QHF_FH_JSI10i_1	132.86	121.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37028	4496	34893	227565;227566;227567;227568	306443;306444;306445;306446;306447;306448	306447			6	
MNAGSDPVVIVSAAR	0	Acetyl (Protein N-term);Oxidation (M)	1543.7664	0.7664416	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						2	2	1	72.745	63.537	2	0.00022265	25204	160513_QHF_FH_JSI12Kacf_1	84.169	75.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37029	4496	34893	227569;227570;227571;227572;227573	306449;306450;306451;306452;306453	306451		2485	5	
MNALDLNMK	1	Unmodified	1048.5045	0.50453659	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.575	53.198	2	0.018992	45452	160511_QHF_FH_JSI12i_2	51.066	36.393			0.99611	1.1399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99611	1.1399	NaN	1	1	Median	132160000	67749000	64413000	0	0	0	0	0	0	0	0	0	132160000	67749000	64413000	37030	1355	34894	227574	306454	306454			1	
MNALFEGR	0	Unmodified	936.44874	0.44873627	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.095	38.186	2	0.0022449	32586	160511_QHF_FH_JSI12i_2	81.548	44.527			1.0643	1.1451	7.2912	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0593	1.0876	NaN	1	0	Median	1.0692	1.2057	NaN	1	0	Median	339660000	169020000	170640000	0	0	0	0	0	0	226200000	107730000	118470000	113460000	61287000	52169000	37031	4686	34895	227575;227576	306455;306456	306455			2	
MNAQETATGMAFEEPIDEK	1	Unmodified	2110.9187	0.91872108	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	63.925	63.3	2;3	1.5795E-43	57303	160511_QHF_FH_JSI10i_1	264.92	243.97			1.0664	1.0002	14.104	8	0	Median	1.0664	0.87884	0.32557	2	0	Median	0.85704	1.0002	2.2708	2	0	Median	1.1295	1.1013	0.67754	2	0	Median	1.0699	1.1106	25.942	2	0	Median	670500000	314790000	355700000	178710000	75450000	103260000	129740000	73352000	56386000	198390000	85571000	112820000	163660000	80419000	83238000	37032	366	34896	227577;227578;227579;227580;227581;227582;227583;227584	306457;306458;306459;306460;306461;306462;306463;306464;306465;306466;306467;306468;306469;306470;306471;306472;306473	306466			17	
MNASPLFLHFVILHGTPNFDTGGVCRPFLK	1	Unmodified	3384.7264	0.72637846	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.186	84.466	4	3.8336E-14	47999	160513_QHF_FH_JSI10Kac_6	94.75	78.862			1.003	1.153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.003	1.153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110650000	54979000	55676000	0	0	0	110650000	54979000	55676000	0	0	0	0	0	0	37033	3024	34897	227585	306474	306474			1	
MNDTVTIR	0	Acetyl (Protein N-term);Oxidation (M)	1006.4753	0.47534495	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	5.18	4			3	2					1	3	2	3	32.401	27.344	2	0.0016663	24790	160511_QHF_FH_JSI11i_1	74.127	47.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37034	2025	34898	227586;227587;227588;227589;227590;227591;227592;227593;227594	306475;306476;306477;306478;306479;306480;306481;306482;306483	306475		1686	9	
MNDTVTIR	0	Acetyl (Protein N-term)	990.48043	0.48043033	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.96	4			1	1					1	1	3	1	48.943	45.347	2	0.00029139	41428	160511_QHF_FH_JSI12i_1	114.5	96.462			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37035	2025	34898	227595;227596;227597;227598;227599;227600	306484;306485;306486;306487;306488;306489;306490;306491;306492;306493	306488			10	
MNEAAEEDRQLNNQK	1	Unmodified	1788.8061	0.80607458	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.25	0.433		3	1									1	3	15.325	14.636	3	0.00033185	11702	160511_QHF_FH_JSI11i_2	67.646	64.986			0.86265	0.86318	37.99	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86265	0.86318	NaN	1	0	Median	1.0765	1.1642	47.853	2	2	Median	135920000	61719000	74200000	0	0	0	0	0	0	56736000	28925000	27811000	79183000	32794000	46389000	37036	4246	34899	227601;227602;227603;227604	306494;306495;306496;306497	306496			4	
MNEAFGDTK	1	Unmodified	1011.4331	0.43314579	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	20.098	19.589	2	3.8276E-06	16472	160511_QHF_FH_JSI9i_1	121.5	104.12			0.93933	0.92058	30.534	4	0	Median	1.3213	1.0932	NaN	1	0	Median	1.177	1.3923	NaN	1	0	Median	0.74968	0.72493	NaN	1	0	Median	0.73044	0.77521	NaN	1	0	Median	2381600000	1474700000	906950000	553820000	315230000	238590000	554580000	303680000	250900000	638120000	452640000	185470000	635080000	403110000	231970000	37037	2380	34900	227605;227606;227607;227608;227609	306498;306499;306500;306501;306502;306503;306504	306503			6	
MNEFLENFEK	1	Unmodified	1299.5805	0.58053831	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	67.697	66.598	2	0.0036328	57330	160511_QHF_FH_JSI12i_2	68.893	55.301			0.80119	0.77769	47.119	2	2	Median	0.66204	0.55732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96959	1.0852	NaN	1	1	Median	140550000	64536000	76009000	50262000	24191000	26071000	0	0	0	0	0	0	90283000	40345000	49938000	37038	5278	34901	227610;227611	306505;306506	306505			2	
MNEFLENFEKNAHLR	1	Acetyl (K)	1932.9152	0.9152311	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.38	71.066	3	0.036785	39000	160513_QHF_FH_JSI11Kac_6	37.431	27.74			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8922200	8922200	0	0	0	0	0	0	0	8922200	8922200	0	0	0	0	37039	5278	34902	227612	306507	306507			1	
MNESDAWFEEK	1	Unmodified	1384.5605	0.56053115	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.81	51.138	2	2.8314E-06	46083	160511_QHF_FH_JSI10i_1	112.13	97.919			0.92584	1.012	7.8391	4	0	Median	1.2362	1.0212	NaN	1	0	Median	0.89165	1.0336	NaN	1	0	Median	0.88372	0.87298	NaN	1	0	Median	0.96134	1.0028	NaN	1	0	Median	535090000	269830000	265270000	120590000	58007000	62586000	153150000	88224000	64929000	136090000	67988000	68105000	125250000	55607000	69646000	37040	444	34903	227613;227614;227615;227616	306508;306509;306510;306511;306512;306513	306511			6	
MNEVSVIK	1	Acetyl (Protein N-term)	960.49502	0.49501776	1378	P31751	AKT2	RAC-beta serine/threonine-protein kinase	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				60.876	59.771	2	0.022244	53135	160511_QHF_FH_JSI9i_1	40.352	22.966			4.4741	3.774	NaN	1	1	Median	4.4741	3.774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8401500	1185100	7216400	8401500	1185100	7216400	0	0	0	0	0	0	0	0	0	37041	1378	34904	227617	306514	306514			1	
MNFESFVK	1	Unmodified	1000.4688	0.46880301	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.546	63.643	2	0.00096726	55375	160511_QHF_FH_JSI11i_2	95.815	23.026			0.99986	1.0805	1.997	4	0	Median	1.229	1.0809	NaN	1	0	Median	0.90998	1.1125	NaN	1	0	Median	1.0325	1.06	NaN	1	0	Median	0.96825	1.0802	NaN	1	0	Median	632600000	287320000	345280000	99910000	36387000	63524000	136890000	62092000	74798000	226070000	111600000	114470000	169730000	77239000	92486000	37042	1557	34905	227618;227619;227620;227621	306515;306516;306517;306518;306519;306520;306521	306518			7	
MNFGDFLTVMTQK	1	Unmodified	1530.7211	0.72107131	1510	P41208	CETN2	Centrin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	101.83	101.75	2	3.6145E-53	88524	160511_QHF_FH_JSI12i_3	221.55	191.29			1.0039	1.0499	22.363	4	0	Median	0.9519	0.79251	NaN	1	0	Median	1.0588	1.1884	NaN	1	0	Median	1.4029	1.2878	NaN	1	0	Median	0.90187	0.92749	NaN	1	0	Median	739750000	337620000	402130000	74074000	33722000	40352000	132240000	47611000	84629000	152850000	53513000	99335000	380590000	202770000	177810000	37043	1510	34906	227622;227623;227624;227625;227626	306522;306523;306524;306525;306526;306527	306526			6	
MNGFIDQIDGIVHFETR	0	Unmodified	1990.9571	0.95709591	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	100.85	100.72	3	0.0016251	86546	160511_QHF_FH_JSI12i_2	67.418	55.944			1.0935	1.1306	14.9	3	0	Plateau	1.6692	1.4597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0935	1.097	NaN	1	0	Median	1.0202	1.1758	NaN	1	0	Median	165300000	76672000	88626000	30360000	11905000	18455000	0	0	0	68333000	32179000	36154000	66605000	32587000	34018000	37044	4411	34907	227627;227628;227629	306528	306528			0	
MNGMLLNDR	0	Unmodified	1062.495	0.49503454	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	40.027	38.861	2	0.0051979	33140	160511_QHF_FH_JSI12i_2	64.485	52.974			0.85422	0.99429	0.76601	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81468	0.99969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89569	0.98892	NaN	1	1	Median	140400000	75701000	64694000	0	0	0	76953000	43109000	33845000	0	0	0	63442000	32593000	30849000	37045	2385;1009	34908	227630;227631	306529;306530	306529			2	
MNGMLLNDRK	1	Unmodified	1190.59	0.58999756	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							4	3	3	1	28.399	27.563	2;3	2.0501E-06	23974	160511_QHF_FH_JSI9i_2	126.55	105.6			2.0057	2.0452	81.089	11	7	Median	3.4092	2.8065	97.673	4	4	Median	4.2426	4.8882	69.793	3	1	Median	2.0057	1.8552	41.255	3	2	Plateau	1.1697	1.2184	NaN	1	0	Median	1684600000	614570000	1070100000	764930000	273040000	491890000	539880000	162860000	377020000	341520000	155790000	185730000	38311000	22876000	15435000	37046	2385;1009	34909	227632;227633;227634;227635;227636;227637;227638;227639;227640;227641;227642	306531;306532;306533;306534;306535;306536;306537;306538;306539;306540;306541;306542;306543	306542			13	
MNGQLDLSGK	1	Acetyl (Protein N-term)	1103.5281	0.52810881	3876	Q92734	TFG	Protein TFG	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	6	5	3			3						1		3	2	58.109	55.168	2	1.2288E-05	50214	160511_QHF_FH_JSI12i_1	80.787	68.547			0.95456	0.91465	24.816	3	0	Median	0.81187	0.67535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95456	0.91465	NaN	1	0	Median	1.0743	1.1045	NaN	1	0	Median	378770000	199440000	179340000	116060000	70060000	45995000	0	0	0	151170000	75398000	75771000	111550000	53978000	57570000	37047	3876	34910	227643;227644;227645;227646;227647;227648	306544;306545;306546;306547;306548;306549;306550	306546			7	
MNGQLDLSGK	1	Acetyl (Protein N-term);Oxidation (M)	1119.523	0.52302343	3876	Q92734	TFG	Protein TFG	yes	yes	0	1	1	0			By MS/MS		11	0				1								1		45.03	35.915	2	0.01102	14727	160513_QHF_FH_JSI11Kac_1	43.282	34.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	641810	641810	0	0	0	0	0	0	0	641810	641810	0	0	0	0	37048	3876	34910	227649	306551	306551		2318	1	
MNGTLDHPDQPDLDAIK	1	Acetyl (Protein N-term)	1920.8887	0.88874158	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	68.3	67.644	2	3.1089E-31	61560	160511_QHF_FH_JSI11i_1	76.357	55.297			0.99065	1.0494	173.08	4	1	Median	0.040141	0.034269	NaN	1	1	Median	0.89299	1.0378	NaN	1	0	Median	1.099	1.0611	NaN	1	0	Median	1.1048	1.1767	NaN	1	0	Median	268790000	139360000	129430000	62550000	30168000	32382000	71757000	37001000	34756000	73630000	40807000	32823000	60854000	31388000	29467000	37049	3897	34911	227650;227651;227652;227653;227654	306552;306553;306554;306555;306556;306557;306558;306559	306553			8	
MNGYISNANYSVK	1	Unmodified	1459.6766	0.67656396	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.034	40.568	2	0.0066986	34831	160511_QHF_FH_JSI11i_2	51.092	36.401			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37050	1499	34912	227655	306560	306560			1	
MNHDFQALALESR	0	Acetyl (Protein N-term)	1572.7355	0.73547582	3692	Q8TB72	PUM2	Pumilio homolog 2	yes	yes	0	1	0	0		By MS/MS	By MS/MS		2	0		2									1	1		70.762	70.152	2	0.00010501	61423	160511_QHF_FH_JSI11i_2	96.059	80.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37051	3692	34913	227656;227657	306561;306562	306561			2	
MNHQQQQQQQK	1	Acetyl (Protein N-term)	1466.6685	0.66845889	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	5.77	5.4461	2	9.2707E-145	3455	160511_QHF_FH_JSI10i_1	144.38	123.38			0.95736	1.0331	14.73	4	0	Median	1.4625	1.1972	NaN	1	0	Median	0.89253	1.0654	NaN	1	0	Median	1.0269	1.0019	NaN	1	0	Median	0.82341	0.84101	NaN	1	0	Median	548860000	258780000	290070000	105720000	40755000	64965000	186710000	93289000	93424000	170720000	82071000	88653000	85699000	42668000	43031000	37052	3922	34914	227658;227659;227660;227661;227662	306563;306564;306565;306566;306567;306568	306567			6	
MNHQQQQQQQK	1	Acetyl (Protein N-term);Oxidation (M)	1482.6634	0.66337351	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	1	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	4.5228	4.2324	2	3.6942E-10	2128	160511_QHF_FH_JSI12i_1	94.302	84.016			0.85029	0.93875	52.955	2	0	Median	NaN	NaN	NaN	0	0	Median	0.56645	0.64555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2764	1.3651	NaN	1	0	Median	68968000	37508000	31460000	0	0	0	25776000	17571000	8205300	0	0	0	43192000	19937000	23255000	37053	3922	34914	227663;227664;227665	306569;306570;306571;306572	306570		2357	4	
MNHTVQTFFSPVNSGQPPNYEMLK	1	Acetyl (Protein N-term)	2807.3047	0.30472116	2171	Q01628;C9JQL5	IFITM3	Interferon-induced transmembrane protein 3;Putative dispanin subfamily A member 2d	yes	no	0	1	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	97.916	97.7	3	4.8373E-24	85725	160511_QHF_FH_JSI11i_2	40.177	37.19			1.1472	1.178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1472	1.178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159910000	77957000	81953000	0	0	0	0	0	0	159910000	77957000	81953000	0	0	0	37054	2171	34915	227666;227667	306573;306574	306574			2	
MNIFGGFR	0	Unmodified	940.45891	0.45890703	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	68.722	67.792	2	0.0033731	56622	160511_QHF_FH_JSI10i_3	73.039	68.723			0.75667	0.74327	12.227	5	0	Median	0.97969	0.78321	NaN	1	0	Median	0.70751	0.83093	17.097	2	0	Median	0.75667	0.74327	NaN	1	0	Median	0.67297	0.67475	NaN	1	0	Median	358810000	211820000	146990000	93448000	53925000	39523000	127870000	75603000	52265000	48614000	29412000	19201000	88877000	52879000	35998000	37055	3071	34916	227668;227669;227670;227671;227672	306575;306576;306577;306578;306579	306576			5	
MNILAPVRR	0	Acetyl (Protein N-term)	1110.6332	0.633183	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	65.374	64.354	2	0.00050632	56974	160511_QHF_FH_JSI10i_2	77.058	64.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37056	4562	34917	227673;227674;227675;227676;227677	306580;306581;306582;306583;306584;306585	306585			6	
MNIMDFNVK	1	Acetyl (Protein N-term)	1152.5308	0.53075134	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	1	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	94.809	94.487	2	0.030354	84014	160511_QHF_FH_JSI9i_1	42.599	38.654			1.1867	1.1749	14.77	4	0	Median	1.1472	0.9353	NaN	1	0	Median	1.0149	1.1578	NaN	1	0	Median	1.2277	1.1922	NaN	1	0	Median	1.2748	1.3315	NaN	1	0	Median	143130000	66394000	76732000	34684000	15137000	19548000	35450000	18307000	17143000	34871000	16777000	18093000	38121000	16173000	21948000	37057	5559	34918	227678;227679;227680;227681	306586	306586			0	
MNINDLK	1	Acetyl (Protein N-term)	888.4375	0.43750288	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				58.964	57.843	1	0.0060417	51389	160511_QHF_FH_JSI9i_1	55.531	9.8505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11894000	11894000	0	11894000	11894000	0	0	0	0	0	0	0	0	0	0	37058	2728	34919	227682	306587	306587			1	
MNISGKK	2	Unmodified	776.42146	0.42145889	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				7.4936	6.9408	2	0.010815	4787	160511_QHF_FH_JSI9i_3	73.975	38.869			1.0433	0.86901	NaN	1	0	Median	1.0433	0.86901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73433000	32103000	41330000	73433000	32103000	41330000	0	0	0	0	0	0	0	0	0	37059	4881	34920	227683	306588	306588			1	
MNKFSHDLK	2	Acetyl (K)	1160.5648	0.56482866	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		37.981	28.933	3	0.0022121	16234	160513_QHF_FH_JSI10Kac_6	60.064	49.409			0.5373	0.58555	122.58	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1666	1.3932	NaN	1	0	Median	0.24748	0.2461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44222000	33043000	11179000	0	0	0	9775000	5404300	4370800	34447000	27638000	6808500	0	0	0	37060	1674	34921	227684;227685	306589;306590;306591	306591	1697		3	
MNKPITPSTYVR	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1505.7548	0.75481428	5081	Q9NWZ3	IRAK4	Interleukin-1 receptor-associated kinase 4	yes	yes	1	1	1	1				By MS/MS	12	0					1								1	67.275	57.814	2	0.015367	25556	160513_QHF_FH_JSI12Kac_2	42.743	22.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37061	5081	34923	227686	306592	306592	3306	2579	1	
MNLAIALTAAR	0	Unmodified	1143.6434	0.64341333	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	73.381	72.313	2	0.00030488	60691	160511_QHF_FH_JSI10i_3	76.228	48.054			0.9347	0.94512	39.636	3	0	Plateau	0.59081	0.50035	NaN	1	0	Median	0.88013	1.036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9347	0.94512	NaN	1	0	Median	85885000	47617000	38268000	11505000	7113700	4391400	17359000	9957000	7401500	0	0	0	57021000	30546000	26475000	37062	1558	34924	227687;227688;227689;227690	306593;306594;306595;306596	306594			3	
MNLASEPQEVLHIGSAHNR	0	Unmodified	2102.0327	0.032720472	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	5	3	2	60.069	59.364	3;4	5.888E-15	52354	160511_QHF_FH_JSI11i_3	123.19	121.15			0.97991	0.99585	16.029	11	0	Median	1.0585	0.92725	10.095	2	0	Median	0.857	1.0155	14.635	4	0	Median	1.1102	1.0734	17.099	3	0	Plateau	0.91131	0.91104	0.073638	2	0	Median	1628500000	826880000	801620000	159860000	78911000	80954000	463120000	239160000	223960000	686510000	330670000	355850000	319000000	178140000	140850000	37063	98	34925	227691;227692;227693;227694;227695;227696;227697;227698;227699;227700;227701;227702	306597;306598;306599;306600;306601;306602;306603;306604;306605;306606;306607;306608;306609;306610;306611	306598			15	
MNLASSFVNGFVNAAFGQDK	1	Unmodified	2116.0048	0.004774387	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	102.09	102.06	2;3	1.0027E-67	91216	160511_QHF_FH_JSI11i_3	280.15	252.19			1.0723	1.0112	15.521	5	2	Median	NaN	NaN	NaN	0	0	Median	0.84598	0.9671	NaN	1	0	Median	1.1657	1.0887	10.775	2	0	Median	1.1735	1.1932	23.403	2	2	Median	618880000	306420000	312460000	0	0	0	110980000	62707000	48270000	305390000	147530000	157860000	202510000	96183000	106320000	37064	2370	34926	227703;227704;227705;227706;227707	306612;306613;306614;306615;306616;306617;306618	306614			7	
MNLDSLSLALSQISYLVDNLTK	1	Oxidation (M)	2453.2723	0.27234162	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	107.06	97.631	3	0.027088	53527	160513_QHF_FH_JSI12Kac_6	38.933	30.439			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37065	21	34927	227708;227709	306619;306620	306620			2	
MNLDSLSLALSQISYLVDNLTK	1	Acetyl (Protein N-term)	2479.288	0.28799169	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	1	0	0	By MS/MS				16	0									1	1				106.98	97.744	3	0.0041049	56392	160513_QHF_FH_JSI9Kac_6	57.578	49.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13081000	0	13081000	13081000	0	13081000	0	0	0	0	0	0	0	0	0	37066	21	34927	227710	306621	306621			1	
MNLFNLDR	0	Acetyl (Protein N-term)	1063.5121	0.51206481	4726	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	95.874	95.47	2	0.00088729	84727	160511_QHF_FH_JSI9i_1	81.296	52.147			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37067	4726	34928	227711;227712;227713	306622;306623;306624	306624			3	
MNLFQSVTSALDNSLAK	1	Unmodified	1837.9244	0.9243988	1198	P21953	BCKDHB	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.07	102.08	3	0.00074107	88845	160511_QHF_FH_JSI12i_3	52.52	33.924			1.2487	1.2716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2487	1.2716	NaN	1	0	Median	188290000	78902000	109380000	0	0	0	0	0	0	0	0	0	188290000	78902000	109380000	37068	1198	34929	227714	306625	306625			1	
MNLGVGAYR	0	Unmodified	979.49094	0.49093544	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	42.087	41.864	2	0.014412	35780	160511_QHF_FH_JSI12i_3	45.382	38.161			1.1505	1.1576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1505	1.1576	NaN	1	0	Median	106900000	53016000	53887000	0	0	0	0	0	0	0	0	0	106900000	53016000	53887000	37069	773	34930	227715	306626	306626			1	
MNLGVGAYRDDNGK	1	Unmodified	1508.7042	0.70417569	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							4	4	5	2	36.168	35.438	2;3	5.5715E-05	31227	160511_QHF_FH_JSI10i_2	88.075	74.045			1.0398	1.0091	17.486	15	3	Median	1.2594	1.0726	17.469	4	0	Median	0.77035	0.90862	7.7732	4	0	Median	1.0036	0.98686	18.591	5	3	Median	1.1772	1.2063	19.453	2	0	Median	2954500000	1548200000	1406400000	504350000	219350000	285000000	898070000	482420000	415650000	1315300000	726040000	589300000	236750000	120360000	116390000	37070	773	34931	227716;227717;227718;227719;227720;227721;227722;227723;227724;227725;227726;227727;227728;227729;227730	306627;306628;306629;306630;306631;306632;306633;306634;306635;306636;306637;306638;306639;306640;306641;306642;306643;306644;306645;306646;306647;306648;306649;306650;306651	306649			25	
MNLGVGAYRDDNGKPYVLPSVR	1	Acetyl (K)	2462.2376	0.23762787	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			78.635	72.887	3	5.562E-11	39761	160513_QHF_FH_JSI10Kac_6	103.27	95.278			1.063	1.237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.063	1.237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107050000	52045000	55001000	0	0	0	107050000	52045000	55001000	0	0	0	0	0	0	37071	773	34932	227731	306652	306652	384		1	
MNLLNQQIQEELSR	0	Unmodified	1714.8672	0.86721827	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	77.892	77.083	2	1.4683E-09	67853	160511_QHF_FH_JSI9i_2	141.73	124.78			0.87819	0.9133	16.48	5	2	Median	0.92805	0.78871	NaN	1	0	Median	0.86599	1.0635	16.654	2	2	Median	0.87819	0.9133	NaN	1	0	Median	0.72812	0.81349	NaN	1	0	Median	130720000	73869000	56848000	21718000	12218000	9500200	40095000	22351000	17744000	39848000	25786000	14062000	29056000	13514000	15542000	37072	2574	34933	227732;227733;227734;227735;227736;227737	306653;306654;306655;306656;306657;306658;306659;306660	306655			8	
MNLPGEVTFLPLNK	1	Unmodified	1571.8381	0.83814998	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.593	3	9	2							4	3	4	3	95.919	95.612	2;3	9.1669E-05	83840	160511_QHF_FH_JSI11i_2	126.19	116.54			1.0117	0.98834	21.399	13	2	Median	1.0117	0.88193	9.2438	3	1	Median	0.66015	0.81813	19.736	3	0	Median	1.0909	1.107	27.656	4	1	Median	1.0241	1.1287	8.7735	3	0	Median	497160000	252350000	244810000	77507000	40391000	37116000	120030000	70288000	49739000	191280000	86090000	105190000	108350000	55583000	52762000	37073	5479	34934	227738;227739;227740;227741;227742;227743;227744;227745;227746;227747;227748;227749;227750;227751	306661;306662;306663;306664;306665;306666;306667;306668;306669;306670;306671;306672;306673;306674;306675;306676;306677;306678;306679;306680;306681;306682;306683;306684	306679			24	
MNLSAIQDR	0	Unmodified	1046.5179	0.51787847	3987;5036	Q96BM9;Q9NVJ2	ARL8A;ARL8B	ADP-ribosylation factor-like protein 8A;ADP-ribosylation factor-like protein 8B	no	no	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	39.186	39.096	2	0.016223	34305	160511_QHF_FH_JSI11i_3	50.805	30.18			1.2286	1.2153	7.428	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1996	1.1531	NaN	1	0	Median	1.2583	1.2808	NaN	1	0	Median	127920000	47733000	80189000	0	0	0	0	0	0	64559000	24373000	40186000	63363000	23360000	40003000	37074	3987;5036	34935	227752;227753	306685	306685			1	
MNLSEEVDLEDYVARPDK	1	Unmodified	2121.9888	0.98884955	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.5	1	6	1							1	1	3	3	78.302	77.67	2;3	4.4702E-07	68271	160511_QHF_FH_JSI11i_2	108.18	97.311			0.96072	1.0747	22.915	5	1	Median	1.4484	1.2275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.886	0.86874	5.7104	2	0	Median	1.1885	1.2575	22.213	2	0	Median	376750000	170100000	206650000	49530000	15267000	34263000	0	0	0	139170000	76461000	62714000	188040000	78369000	109670000	37075	1567	34936	227754;227755;227756;227757;227758;227759;227760;227761	306686;306687;306688;306689;306690;306691;306692	306690			7	
MNMLAGPQPYGGSK	1	Unmodified	1449.6745	0.67445547	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	49.572	48.724	2	0.00014984	42714	160511_QHF_FH_JSI9i_2	110.86	94.966			1.0515	0.95958	72.473	4	4	Median	0.94797	0.80449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56462	0.54743	104.31	2	2	Median	1.1725	1.2788	NaN	1	1	Median	281860000	184650000	97215000	29075000	14452000	14623000	0	0	0	214370000	152180000	62185000	38420000	18013000	20407000	37076	4581	34937	227762;227763;227764;227765	306693;306694;306695;306696	306695			4	
MNNHVSSKPSTMK	2	Acetyl (Protein N-term)	1501.7017	0.70173285	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	16.145	15.954	2;3	1.2256E-06	13084	160511_QHF_FH_JSI11i_3	124.42	109.73			0.95371	0.90358	2.2522	2	0	Median	1.0337	0.88931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87995	0.91809	NaN	1	0	Median	135050000	68401000	66646000	44338000	17957000	26381000	0	0	0	31396000	13514000	17882000	59313000	36929000	22383000	37077	707	34938	227766;227767;227768;227769	306697;306698;306699;306700	306697			4	
MNNPSETSKPSMESGDGNTGTQTNGLDFQK	2	Unmodified	3171.3721	0.37208503	1062	P14859	POU2F1	POU domain, class 2, transcription factor 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	46.215	45.563	3	0.018466	41369	160511_QHF_FH_JSI12i_1	28.405	26.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11529000	0	11529000	0	0	0	0	0	0	0	0	0	11529000	0	11529000	37078	1062	34939	227770	306701	306701			1	
MNNSGADEIGK	1	Acetyl (Protein N-term)	1176.5081	0.50810164	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	4.84	5			3						1	2	2	3	34.352	31.406	1;2	4.0361E-10	28506	160511_QHF_FH_JSI12i_1	113.22	103.21			1.1026	1.093	11.204	6	0	Median	1.393	1.1594	NaN	1	0	Median	0.93005	1.106	NaN	1	0	Median	1.1084	1.0732	0.92513	2	0	Median	0.94441	0.98433	20.389	2	0	Median	744820000	349560000	395260000	203800000	95655000	108150000	218950000	110070000	108880000	178090000	79092000	98999000	143980000	64750000	79232000	37079	4053	34940	227771;227772;227773;227774;227775;227776;227777;227778	306702;306703;306704;306705;306706;306707;306708;306709;306710;306711;306712	306705			11	
MNNVNVVYTPWSNLK	1	Unmodified	1777.8821	0.88214006	3363	Q86WR0	CCDC25	Coiled-coil domain-containing protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		79.851	79.187	2	2.6382E-21	69520	160511_QHF_FH_JSI11i_2	138.94	114.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37080	3363	34941	227779;227780;227781;227782	306713;306714;306715;306716	306714			4	
MNPAAEAEFNILLATDSYK	1	Acetyl (Protein N-term)	2139.0194	0.019421398	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	1	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	102.68	102.58	2	5.1829E-08	93224	160511_QHF_FH_JSI12i_1	55.66	40.115			0.80259	0.96471	6.2451	4	0	Linear	1.1885	1.0073	NaN	1	0	Median	0.78488	0.92395	NaN	1	0	Median	1.0596	1.0298	NaN	1	0	Median	0.87879	0.90764	NaN	1	0	Median	235180000	114120000	121060000	29580000	12894000	16686000	88620000	42480000	46139000	42899000	23738000	19161000	74085000	35008000	39077000	37081	1566	34942	227783;227784;227785;227786	306717	306717			1	
MNPAAFDFLLQR	0	Unmodified	1421.7126	0.71255553	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		97.114	97.114	2	0.052848	86525	160511_QHF_FH_JSI11i_3	43.512	38.9			4.1148	3.9565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1148	3.9565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9869700	1531500	8338200	0	0	0	0	0	0	9869700	1531500	8338200	0	0	0	37082	2257	34943	227787	306718	306718			1	
MNPDLRR	0	Acetyl (Protein N-term)	942.47053	0.47053435	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	1	0	1			By MS/MS		14	0							1					1		31.271	22.149	2	0.036874	14143	160513_QHF_FH_JSI11Kac_4	41.302	28.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37083	2624	34944	227788	306719	306719			1	
MNPEYDYLFK	1	Acetyl (Protein N-term);Oxidation (M)	1376.5959	0.59585402	4642	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	5.32	3				3	4				1	3	2	4	80.317	75.485	2	1.5642E-06	31689	160513_QHF_FH_JSI12Kac_2	93.551	82.061			1.1322	0.94399	26.354	5	0	Linear	1.1322	0.94261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92108	0.90495	NaN	1	0	Median	1.0767	1.1279	22.923	3	0	Plateau	141900000	66949000	74951000	38173000	20673000	17500000	1050800	1050800	0	41565000	17269000	24296000	61110000	27956000	33154000	37084	4642	34945	227789;227790;227791;227792;227793;227794;227795;227796;227797;227798	306720;306721;306722;306723;306724;306725;306726;306727;306728;306729	306728		2507	8	
MNPEYDYLFK	1	Acetyl (Protein N-term)	1360.6009	0.6009394	4642	Q9H0U4	RAB1B	Ras-related protein Rab-1B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	92.356	91.963	2	5.108E-10	83631	160511_QHF_FH_JSI11i_1	114.89	105.68			1.0006	1.0283	5.8015	4	0	Median	1.2267	1.002	NaN	1	0	Median	0.92173	1.113	NaN	1	0	Median	1.0086	0.97644	NaN	1	0	Median	0.99264	1.0553	NaN	1	0	Median	2413000000	1104500000	1308500000	606540000	261620000	344910000	621160000	290900000	330260000	541390000	246850000	294540000	643890000	305130000	338760000	37085	4642	34945	227799;227800;227801;227802	306730;306731;306732;306733;306734;306735;306736;306737;306738;306739;306740;306741	306732			12	
MNPGDLQWMTAGR	0	Unmodified	1475.665	0.66495341	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.829	2	1	1							1	1	1	1	71.04	70.196	2	1.0322E-05	60422	160511_QHF_FH_JSI12i_2	134.2	134.2			1.177	1.222	17.358	4	3	Median	1.1953	0.98727	NaN	1	0	Median	1.1589	1.3461	NaN	1	1	Median	1.459	1.4394	NaN	1	1	Median	1.0243	1.1093	NaN	1	1	Median	587360000	251250000	336110000	18774000	9221600	9552300	149860000	65347000	84510000	178170000	57137000	121030000	240560000	119540000	121020000	37086	157	34946	227803;227804;227805;227806	306742;306743;306744;306745	306743			4	
MNPQSAFFQGK	1	Unmodified	1253.5863	0.58629239	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	3	2	50.907	50.214	2	3.3182E-07	44014	160511_QHF_FH_JSI9i_2	120.12	107.53			0.92464	0.906	14.021	6	6	Median	0.97357	0.81286	NaN	1	1	Median	0.66404	0.80249	NaN	1	1	Median	0.92738	0.906	11.342	2	2	Median	1.0097	1.0677	8.1281	2	2	Median	1359600000	740400000	619150000	225880000	109340000	116540000	229500000	135660000	93838000	466310000	258130000	208180000	437860000	237270000	200590000	37087	1207	34948	227807;227808;227809;227810;227811;227812;227813	306746;306747;306748;306749;306750;306751;306752;306753	306749			8	
MNPQSAFFQGKLK	2	Acetyl (K)	1536.7759	0.77588407	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.478	67.154	2	2.2714E-06	36624	160513_QHF_FH_JSI11Kac_6	129.82	103.38			0.17507	0.17124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17507	0.17124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23749000	21776000	1973100	0	0	0	0	0	0	23749000	21776000	1973100	0	0	0	37088	1207	34949	227814	306754	306754	1081		1	
MNQEKLAK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1060.5223	0.52229515	4146	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	yes	yes	1	1	1	1				By MS/MS	11	0				1									1	27.852	20.235	2	0.011605	8908	160513_QHF_FH_JSI12Kacf_1	36.395	19.01			0.58821	0.61976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58821	0.61976	NaN	1	0	Median	3241600	1972300	1269400	0	0	0	0	0	0	0	0	0	3241600	1972300	1269400	37089	4146	34950	227815	306755	306755	3052	2399	1	
MNREEILAFIK	1	Unmodified	1362.733	0.73295662	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.02		3	6						1	2	2	4	2	72.331	71.755	2;3	3.3727E-06	63711	160511_QHF_FH_JSI11i_3	99.5	82.967			1.0088	1.1955	40.202	8	5	Median	1.9301	1.5837	NaN	1	0	Median	1.0088	1.1955	0.40846	2	1	Median	0.95866	0.89066	54.685	4	3	Median	0.96647	1.0033	NaN	1	1	Median	1085300000	438040000	647270000	117030000	38215000	78810000	207540000	73034000	134510000	645540000	258990000	386540000	115210000	67801000	47410000	37090	1803	34951	227816;227817;227818;227819;227820;227821;227822;227823;227824;227825	306756;306757;306758;306759;306760;306761;306762;306763;306764;306765;306766;306767;306768	306756			13	
MNRPAPVEISYENMR	0	Acetyl (Protein N-term)	1847.8658	0.86583806	2334	Q12974	PTP4A2	Protein tyrosine phosphatase type IVA 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	63.027	62.257	2	4.6105E-07	56381	160511_QHF_FH_JSI10i_1	127.17	94.228			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37091	2334	34952	227826;227827;227828;227829;227830;227831;227832;227833	306769;306770;306771;306772;306773;306774;306775;306776	306772			8	
MNRPAPVEVTYK	1	Unmodified	1403.7231	0.72312022	3931	Q93096	PTP4A1	Protein tyrosine phosphatase type IVA 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		32.791	31.736	2;3	1.583E-05	26477	160511_QHF_FH_JSI10i_3	110.38	95.818			1.4443	1.3907	22.706	4	4	Median	1.5679	1.2795	NaN	1	1	Median	1.483	1.6864	15.465	2	2	Median	1.1984	1.1097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	427050000	212100000	214940000	90053000	38161000	51892000	323120000	167450000	155660000	13881000	6491300	7390000	0	0	0	37092	3931	34953	227834;227835;227836;227837	306777;306778;306779;306780	306778			4	
MNSDRVPDVVLIK	1	Unmodified	1484.8021	0.80209882	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	57.46	56.925	3	0.00046794	50372	160511_QHF_FH_JSI11i_3	64.374	49.688			0.81437	0.87939	10.799	4	1	Median	1.0865	0.90807	NaN	1	1	Median	0.70208	0.86221	NaN	1	0	Median	0.9341	0.89691	NaN	1	0	Median	0.70999	0.71947	NaN	1	0	Median	481790000	265240000	216540000	64098000	30365000	33734000	82829000	58315000	24514000	168650000	81144000	87505000	166210000	95420000	70791000	37093	4021	34954	227838;227839;227840;227841	306781;306782;306783;306784;306785;306786	306782			6	
MNSGPPGLGGK	1	Unmodified	1013.4964	0.49641475	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	22.646	21.874	2	0.0043283	18118	160511_QHF_FH_JSI12i_2	65.157	51.578			1.2444	1.2799	5.9113	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3431	1.3345	NaN	1	1	Median	1.153	1.2275	NaN	1	1	Median	53328000	22525000	30803000	0	0	0	0	0	0	30098000	12715000	17383000	23230000	9810100	13420000	37094	2617	34955	227842;227843	306787;306788	306787			2	
MNSLPAER	0	Unmodified	916.44365	0.44365089	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.777	17.742	2	0.0095222	14561	160511_QHF_FH_JSI12i_2	64.42	38.684			3.7666	4.3263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7666	4.3263	NaN	1	1	Median	309300000	59475000	249830000	0	0	0	0	0	0	0	0	0	309300000	59475000	249830000	37095	1351	34956	227844	306789	306789			1	
MNSLTFKK	2	Unmodified	967.51609	0.51608756	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			24.914	23.639	2	0.055876	19477	160511_QHF_FH_JSI10i_3	36.185	15.631			1.8966	2.2716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8966	2.2716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7980400	3167000	4813400	0	0	0	7980400	3167000	4813400	0	0	0	0	0	0	37096	4181	34957	227845	306790	306790			1	
MNSNVENLPPHIIR	0	Acetyl (Protein N-term)	1674.8512	0.85117428	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	69.047	67.886	2	8.1137E-08	59604	160511_QHF_FH_JSI11i_2	92.866	66.823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37097	2761	34958	227846;227847;227848;227849	306791;306792;306793;306794	306794			4	
MNSSTSTMSEEPDALSVVNQLR	0	Acetyl (Protein N-term)	2437.1101	0.11010367	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	97.009	96.81	2;3	8.4907E-23	87858	160511_QHF_FH_JSI11i_1	154.6	147.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37098	5049	34959	227850;227851;227852;227853;227854;227855	306795;306796;306797;306798;306799;306800;306801;306802	306795			8	
MNSSTSTMSEEPDALSVVNQLR	0	Oxidation (M)	2411.0945	0.09445361	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			96.883	96.898	2	0.00010335	87863	160511_QHF_FH_JSI10i_1	66.285	59.246			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37099	5049	34959	227856	306803	306803		2576	1	
MNSVGEACTDMKR	1	Acetyl (Protein N-term)	1539.648	0.64798272	364	O43715	TRIAP1	TP53-regulated inhibitor of apoptosis 1	yes	yes	0	1	0	1			By MS/MS		1	0	1											1		38.928	38.626	2	0.017287	34823	160511_QHF_FH_JSI11i_1	43.628	37.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9659100	9659100	0	0	0	0	0	0	0	9659100	9659100	0	0	0	0	37100	364	34960	227857	306804	306804			1	
MNTLQAIWMMDPK	1	Unmodified	1577.7404	0.74042654	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.35		11	1						5	4	4	5	4	93.016	89.861	2;3	1.1517E-16	43940	160513_QHF_FH_JSI9Kac_6	142.1	123.14			1.0526	1.0395	15.039	13	6	Median	1.1521	0.97781	0.9684	3	1	Median	0.89057	1.0597	25.681	4	2	Median	1.1579	1.0952	4.75	3	1	Plateau	1.0526	1.1789	7.048	3	2	Plateau	991480000	455240000	536240000	172870000	78737000	94131000	380490000	187540000	192950000	290780000	132650000	158130000	147340000	56308000	91037000	37101	2328	34961	227858;227859;227860;227861;227862;227863;227864;227865;227866;227867;227868;227869;227870;227871;227872;227873;227874	306805;306806;306807;306808;306809;306810;306811;306812;306813;306814;306815;306816;306817;306818;306819;306820;306821;306822;306823;306824;306825;306826;306827;306828;306829;306830	306824			26	
MNTNPSR	0	Unmodified	818.37049	0.37048595	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.5	1	5					1	1		2	1	3	2	5.8011	3.3713	2	0.0055815	2213	160513_QHF_FH_JSI11Kac_4	94.262	58.076			0.9025	0.92636	40.72	8	2	Median	2.386	2.0296	4.9481	2	0	Median	0.69178	0.85365	NaN	1	0	Median	0.98989	0.96971	22.776	3	0	Median	0.72821	0.80034	14.213	2	2	Median	1492300000	746740000	745520000	356410000	101490000	254910000	186400000	120740000	65662000	560020000	300660000	259360000	389440000	223850000	165590000	37102	1497	34962	227875;227876;227877;227878;227879;227880;227881;227882	306831;306832;306833;306834;306835;306836;306837	306834			7	
MNTSPGTVGSDPVILATAGYDHTVR	0	Acetyl (Protein N-term)	2600.2541	0.25406579	4467	Q9BVC4	MLST8	Target of rapamycin complex subunit LST8	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	87.202	86.547	3	3.0392E-06	78856	160511_QHF_FH_JSI12i_1	61.801	57.849			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37103	4467	34963	227883;227884	306838;306839	306838			2	
MNTTLSSLK	1	Unmodified	993.51648	0.51648149	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	2	5	2	38.209	34.932	2	1.5625E-05	29701	160511_QHF_FH_JSI11i_2	108.98	55.811			0.86052	0.89406	46.401	11	6	Median	1.177	0.99903	15.7	2	0	Median	0.58528	0.69651	38.168	2	1	Median	0.88133	0.86827	53.207	5	4	Median	0.54569	0.59271	71.701	2	1	Median	1520100000	784770000	735320000	216620000	101880000	114740000	366830000	213980000	152850000	584460000	300180000	284280000	352180000	168740000	183450000	37104	1604	34964	227885;227886;227887;227888;227889;227890;227891;227892;227893;227894;227895	306840;306841;306842;306843;306844;306845;306846;306847;306848;306849;306850;306851	306849			12	
MNTVFHIWK	1	Unmodified	1174.5957	0.59573486	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	2	3	3	4	66.553	61.443	2;3	7.456E-05	52692	160511_QHF_FH_JSI12i_3	83	72.476			1.0244	1.0131	38.624	11	2	Median	1.1503	0.97754	5.6412	2	0	Median	0.92023	1.0595	44.184	3	1	Median	1.1781	1.0997	55.614	3	0	Plateau	0.95215	0.94295	8.4433	3	1	Median	907320000	404360000	502960000	148780000	67547000	81236000	271940000	117480000	154460000	190160000	89878000	100280000	296430000	129450000	166980000	37105	5278	34965	227896;227897;227898;227899;227900;227901;227902;227903;227904;227905;227906;227907	306852;306853;306854;306855;306856;306857;306858;306859;306860;306861;306862;306863;306864;306865;306866;306867;306868;306869;306870	306863			19	
MNVDQAFHELVR	0	Unmodified	1457.7085	0.70853279	1977	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	74.2	73.39	2;3	5.0553E-06	65169	160511_QHF_FH_JSI10i_2	93.494	86.61			0.82221	0.96842	75.19	6	2	Median	1.1626	1.0009	NaN	1	0	Median	0.30513	0.38383	130.84	2	1	Median	0.8159	0.81641	34.562	2	0	Median	0.8655	0.96868	NaN	1	1	Median	374650000	202190000	172460000	38488000	16385000	22102000	115580000	67382000	48196000	149370000	79882000	69493000	71215000	38544000	32670000	37106	1977	34966	227908;227909;227910;227911;227912;227913	306871;306872;306873;306874;306875;306876;306877;306878;306879	306878			9	
MNVEEDVQEEQSK	1	Unmodified	1563.6723	0.67226644	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		32.853	32.335	2	4.6622E-06	28948	160511_QHF_FH_JSI11i_1	124.86	98.814			1.508	1.5436	22.248	4	4	Median	1.5103	1.2356	NaN	1	1	Median	1.3926	1.6108	NaN	1	1	Median	1.817	1.7662	25.071	2	2	Median	NaN	NaN	NaN	0	0	Median	167680000	78500000	89179000	35714000	18192000	17522000	38975000	18519000	20456000	92991000	41789000	51202000	0	0	0	37107	2081	34967	227914;227915;227916;227917	306880;306881;306882;306883	306881			4	
MNVFDTELK	1	Unmodified	1095.527	0.52704617	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	60.747	59.883	2	2.5552E-06	54479	160511_QHF_FH_JSI12i_1	126.07	40.856			1.1023	1.1538	11.246	9	1	Median	1.4345	1.2338	14.878	3	1	Median	0.9786	1.1667	11.102	2	0	Median	1.1229	1.1195	14.514	2	0	Median	1.0048	1.0923	7.7409	2	0	Median	2268400000	1035100000	1233300000	460310000	182780000	277530000	538420000	256720000	281700000	705230000	322070000	383160000	564470000	273550000	290920000	37108	1103	34968	227918;227919;227920;227921;227922;227923;227924;227925;227926	306884;306885;306886;306887;306888;306889;306890;306891;306892;306893;306894;306895	306887			12	
MNVGVAHSEVNPNTR	0	Acetyl (Protein N-term)	1665.7893	0.7893023	2852	Q53FV1;Q9P0S3	ORMDL2;ORMDL1	ORM1-like protein 2;ORM1-like protein 1	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	2	1	1	42.13	41.419	2	4.2068E-12	36790	160511_QHF_FH_JSI9i_1	108.59	93.023			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37109	2852	34969	227927;227928;227929;227930;227931;227932	306896;306897;306898;306899;306900;306901;306902	306901			7	
MNVLADALK	1	Unmodified	973.52665	0.52665224	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.08	5	4	4				3	4		4	5	6	5	64.703	60.463	2	3.0672E-06	51978	160511_QHF_FH_JSI12i_2	124.23	98.336			0.97752	1.0516	36.159	20	5	Median	0.90169	0.73617	59.598	4	1	Median	1.0058	1.206	20.759	5	0	Median	0.95465	0.96483	26.705	6	3	Median	1.0076	1.0802	30.918	5	1	Median	13327000000	6204200000	7122400000	2369500000	972890000	1396600000	3175500000	1538400000	1637000000	4938100000	2219200000	2718900000	2843600000	1473700000	1369900000	37110	1986	34970	227933;227934;227935;227936;227937;227938;227939;227940;227941;227942;227943;227944;227945;227946;227947;227948;227949;227950;227951;227952	306903;306904;306905;306906;306907;306908;306909;306910;306911;306912;306913;306914;306915;306916;306917;306918;306919;306920;306921;306922;306923;306924;306925;306926;306927;306928;306929;306930;306931;306932;306933;306934;306935;306936	306911			34	
MNVLADALK	1	Oxidation (M)	989.52157	0.52156686	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	47.341	46.629	2	0.033464	40882	160511_QHF_FH_JSI10i_2	41.876	23.89			1.1865	1.3007	10.785	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1272	1.3706	NaN	1	0	Median	1.1314	1.1139	NaN	1	0	Median	1.2443	1.3007	NaN	1	0	Median	135670000	56748000	78918000	0	0	0	36416000	17718000	18698000	48453000	21221000	27232000	50797000	17810000	32988000	37111	1986	34970	227953;227954;227955	306937;306938	306938			2	
MNVQVTQHR	0	Unmodified	1111.5557	0.55566096	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			14.318	13.473	3	0.018439	10753	160511_QHF_FH_JSI10i_3	25.979	8.0822			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37112	2584	34971	227956	306939	306939			1	
MNVSPDVNYEELAR	0	Unmodified	1635.7563	0.75627084	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	63.69	62.978	2	1.6771E-07	57244	160511_QHF_FH_JSI11i_1	140.45	113.56			0.94243	0.96651	6.9763	6	0	Median	1.222	1.0255	4.9488	2	0	Median	0.75694	0.90648	7.3296	2	0	Median	0.96577	0.932	NaN	1	0	Median	0.91966	0.97846	NaN	1	0	Median	1728200000	860880000	867330000	430970000	207980000	222990000	381950000	225380000	156570000	491830000	222960000	268870000	423460000	204550000	218910000	37113	1131	34972	227957;227958;227959;227960;227961;227962	306940;306941;306942;306943;306944;306945;306946;306947;306948	306941			9	
MNVTPEVK	1	Acetyl (Protein N-term)	958.47937	0.4793677	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									1	2	1	1	46.951	46.322	2	0.0026387	41096	160511_QHF_FH_JSI9i_1	40.002	35.147			1.5594	1.3082	144.84	5	3	Median	1.5594	1.3082	NaN	1	0	Median	0.79619	0.89718	209.73	2	2	Median	9.843	9.3538	NaN	1	1	Median	0.9971	1.0654	NaN	1	0	Median	145610000	70048000	75563000	37999000	17007000	20993000	41192000	25352000	15840000	21980000	2802400	19178000	44439000	24887000	19552000	37114	2943	34973	227963;227964;227965;227966;227967	306949;306950;306951;306952	306952			4	
MNVVFAVK	1	Acetyl (Protein N-term)	948.51027	0.5102739	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		87.928	87.81	2	0.012698	79797	160511_QHF_FH_JSI10i_1	47.067	39.837			5.4138	5.545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.4138	5.545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2667700	273410	2394300	0	0	0	2667700	273410	2394300	0	0	0	0	0	0	37115	4967	34974	227968;227969	306953;306954	306954			2	
MNVVFAVK	1	Acetyl (Protein N-term);Oxidation (M)	964.50519	0.50518852	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	1	1	0		By MS/MS		By MS/MS	12	0.577				1	4	1					2		4	71.678	62.745	2	0.0014752	27456	160513_QHF_FH_JSI12Kac_2	49.358	29.881			2.4447	2.6171	155.66	2	1	Median	NaN	NaN	NaN	0	0	Median	7.1909	7.8674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83113	0.87059	NaN	1	0	Median	14444000	8165000	6279000	0	0	0	3523100	2770000	753070	0	0	0	10921000	5394900	5526000	37116	4967	34974	227970;227971;227972;227973;227974;227975	306955;306956;306957;306958;306959;306960	306959		2564	6	
MNWNKGGPGTK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1288.587	0.58702067	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.495				3	4						3	1	3	43.335	34.371	2	0.00043881	15572	160513_QHF_FH_JSI10Kac_2	49.35	42.455			0.98485	1.0153	14.986	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1359	1.2866	12.846	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97262	1.0279	2.1181	2	0	Median	10168000	5202200	4966200	0	0	0	3572000	1797800	1774300	0	0	0	6596400	3404500	3191900	37117	3377	34975	227976;227977;227978;227979;227980;227981;227982	306961;306962;306963;306964;306965;306966;306967	306962	2856	2254	7	
MNWNKGGPGTK	2	Acetyl (K);Acetyl (Protein N-term)	1272.5921	0.59210605	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	1	1	0	1			By MS/MS	By MS/MS	12	0					3							2	1	62.741	53.242	2	0.0015797	23673	160513_QHF_FH_JSI12Kac_2	32.008	29.03			1.0227	1.0059	7.5844	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0207	0.95336	NaN	1	0	Median	1.0246	1.0613	NaN	1	0	Median	5150800	2850000	2300800	0	0	0	0	0	0	1588800	825790	763030	3562000	2024200	1537800	37118	3377	34975	227983;227984;227985	306968;306969	306969	2856		2	
MNYIGQFLPGYEAPAFMDPLLPK	1	Unmodified	2611.2855	0.28548926	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	102.38	102.28	2;3	1.7999E-23	90094	160511_QHF_FH_JSI11i_2	158.17	125.89			0.82088	0.90017	12.15	4	1	Median	1.2685	1.0612	NaN	1	1	Median	0.76739	0.95109	NaN	1	0	Median	0.87809	0.85196	NaN	1	0	Median	0.71637	0.80714	NaN	1	0	Median	554960000	266310000	288650000	221850000	80125000	141720000	69881000	40844000	29037000	148460000	78022000	70441000	114770000	67316000	47450000	37119	1395	34976	227986;227987;227988;227989	306970;306971;306972	306971			3	
MNYMPGTASLIEDIDKK	2	Acetyl (Protein N-term)	1966.938	0.93799995	247	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	2										1	1		101.11	101.02	2	1.193E-07	91735	160511_QHF_FH_JSI11i_1	120.14	109.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34525000	0	34525000	0	0	0	0	0	0	34525000	0	34525000	0	0	0	37120	247	34977	227990;227991	306973;306974	306973			2	
MNYSDAIVWLK	1	Unmodified	1338.6642	0.66420836	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	1	2	86.559	84.149	2	1.0735E-05	74706	160511_QHF_FH_JSI12i_2	128.03	100.73			0.91905	0.95639	17.666	5	1	Median	0.98447	0.83092	NaN	1	0	Median	0.81746	1.025	NaN	1	0	Median	0.94688	0.95639	NaN	1	0	Median	0.75429	0.82042	28.602	2	1	Median	375930000	215280000	160650000	72122000	36176000	35946000	104650000	55530000	49122000	112140000	73019000	39117000	87019000	50553000	36467000	37121	375	34978	227992;227993;227994;227995;227996	306975;306976;306977;306978;306979	306975			5	
MNYSGDQGQTIR	0	Unmodified	1368.6092	0.60921267	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.058	21.555	2	0.027652	18962	160511_QHF_FH_JSI12i_1	40.589	12.847			0.61561	0.64523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61561	0.64523	NaN	1	0	Median	123740000	80569000	43168000	0	0	0	0	0	0	0	0	0	123740000	80569000	43168000	37122	2947	34979	227997	306980	306980			1	
MPCQLHQVIVAR	0	Unmodified	1450.7537	0.75370884	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	1	2		46.698	40.078	3	0.00073365	32678	160511_QHF_FH_JSI9i_3	55.452	50.298			0.87199	0.98325	23.248	3	2	Plateau	1.4404	1.1901	NaN	1	1	Median	0.80715	0.98325	NaN	1	0	Median	1.6596	1.5616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60098000	26073000	34025000	23172000	9306700	13865000	26808000	13606000	13202000	10117000	3159300	6958100	0	0	0	37123	1122	34980	227998;227999;228000;228001	306981;306982;306983;306984	306983			4	
MPCQSLQPEPINTPTHTK	1	Unmodified	2077.9925	0.99249514	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	40.983	40.167	3	0.0012232	34442	160511_QHF_FH_JSI11i_2	53.278	49.326			0.66944	0.69936	99.476	4	3	Median	NaN	NaN	NaN	0	0	Median	0.13207	0.16389	NaN	1	1	Median	0.93575	0.94629	82.535	2	1	Median	0.88347	0.92647	NaN	1	1	Median	88704000	59520000	29184000	0	0	0	14302000	13241000	1061500	57859000	37557000	20302000	16543000	8722500	7820000	37124	1576	34981	228002;228003;228004;228005	306985;306986;306987;306988;306989	306987			5	
MPDGPVALEESYSAVMGIVSEVEQYVK	1	Unmodified	2926.398	0.39801242	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	1	2		104.55	102.59	3	1.0611E-48	58219	160513_QHF_FH_JSI10Kac_6	167.57	153.84			0.80987	0.96359	49.86	3	1	Median	0.55072	0.47458	NaN	1	0	Median	0.80987	0.96359	NaN	1	0	Median	1.2938	1.242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	185260000	116060000	69201000	11205000	5413900	5790800	159210000	106520000	52691000	14847000	4127100	10720000	0	0	0	37125	2517	34982	228006;228007;228008;228009	306990;306991;306992;306993;306994	306994			5	
MPDLHLK	1	Unmodified	852.45276	0.45275902	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	36.552	35.696	3	0.0025601	30458	160511_QHF_FH_JSI12i_2	68.915	53.476			1.0056	1.0203	20.33	8	0	Median	1.0354	0.86144	6.8727	2	0	Median	0.78426	0.92676	11.929	2	0	Median	1.2494	1.2112	22.597	2	0	Median	1.1506	1.2247	14.798	2	0	Median	1363900000	626120000	737740000	238700000	96809000	141890000	272300000	132740000	139570000	517220000	244160000	273060000	335650000	152410000	183240000	37126	2286	34983	228010;228011;228012;228013;228014;228015;228016;228017	306995;306996;306997;306998;306999;307000;307001;307002;307003;307004;307005;307006;307007;307008;307009;307010;307011;307012;307013;307014;307015	306998			21	
MPDLHLK	1	Oxidation (M)	868.44767	0.44767364	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0	By MS/MS		By MS/MS		2	0		2								1		1		36.49	35.752	3	0.0060473	31109	160511_QHF_FH_JSI9i_2	47.849	34.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37127	2286	34983	228018;228019	307016;307017	307016		1889	2	
MPDLHLKAPK	2	Acetyl (K)	1190.6482	0.64816436	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		60.465	50.152	3	0.0038893	26991	160513_QHF_FH_JSI11Kac_6	49.5	45.737			0.068606	0.067393	155.97	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.068606	0.067393	155.97	2	1	Median	NaN	NaN	NaN	0	0	Median	28024000	24140000	3884200	0	0	0	0	0	0	28024000	24140000	3884200	0	0	0	37128	2286	34984	228020;228021	307018;307019	307018	2404		2	
MPDMHFK	1	Unmodified	904.39353	0.39352958	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.75		6	4						3	3	3	3	4	33.751	30.947	3	0.0023069	26976	160511_QHF_FH_JSI9i_2	77.674	66.605			1.0459	0.95119	76.61	13	1	Median	1.0459	0.90465	13.776	3	0	Plateau	0.69883	0.86003	16.56	3	0	Median	1.2571	1.3025	17.294	3	0	Median	0.73812	0.81444	133.24	4	1	Median	1909600000	989440000	920200000	336990000	153340000	183650000	406290000	235570000	170720000	643260000	309830000	333430000	523090000	290700000	232390000	37129	2286	34985	228022;228023;228024;228025;228026;228027;228028;228029;228030;228031;228032;228033;228034	307020;307021;307022;307023;307024;307025;307026;307027;307028;307029;307030;307031;307032;307033;307034;307035;307036;307037;307038;307039;307040;307041;307042;307043;307044	307030			25	
MPDMHFK	1	2 Oxidation (M)	936.38336	0.38335882	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	2	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	32.01	31.093	3	0.013008	26352	160511_QHF_FH_JSI12i_2	44.447	25.716			0.94726	0.95112	32.86	3	0	Median	0.82058	0.71718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94726	0.95112	NaN	1	0	Median	1.2736	1.3808	NaN	1	0	Median	155240000	72146000	83092000	30349000	15602000	14746000	0	0	0	68545000	33837000	34708000	56345000	22707000	33638000	37130	2286	34985	228035;228036;228037	307045;307046	307045		1890;1891	2	
MPDMHVNMPK	1	Unmodified	1198.5297	0.52970548	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			43.626	42.618	3	0.00076651	37149	160511_QHF_FH_JSI9i_2	58.37	46.787			0.90285	0.93338	1.7798	2	0	Median	1.0503	0.92171	NaN	1	0	Median	0.77609	0.9452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	326510000	161490000	165030000	132430000	58588000	73839000	194090000	102900000	91189000	0	0	0	0	0	0	37131	2286	34986	228038;228039	307047;307048;307049	307047			3	
MPDVDISVPK	1	Unmodified	1099.5583	0.5583463	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.25	59.605	2	0.04178	54269	160511_QHF_FH_JSI12i_1	37.344	33.598			0.7955	0.92336	9.3403	4	0	Linear	1.0492	0.86813	NaN	1	0	Median	0.78584	0.9265	NaN	1	0	Median	0.9326	0.92024	NaN	1	0	Median	1.0275	1.0802	NaN	1	0	Median	881940000	434330000	447610000	195940000	86469000	109470000	256490000	146820000	109670000	226720000	97787000	128930000	202790000	103250000	99538000	37132	2286	34987	228040;228041;228042;228043	307050	307050			1	
MPDVHFK	1	Unmodified	872.42146	0.42145889	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	30.919	30.172	3	0.0036186	26288	160511_QHF_FH_JSI9i_2	60.76	42.029			1.0467	1.0862	42.839	5	0	Median	1.7857	1.5017	NaN	1	0	Median	0.59854	0.75097	NaN	1	0	Median	1.0467	1.0605	NaN	1	0	Median	1.483	1.5948	54.318	2	0	Median	468850000	249340000	219510000	64607000	28213000	36394000	106450000	69460000	36988000	177270000	99277000	77994000	120520000	52386000	68133000	37133	2286	34988	228044;228045;228046;228047;228048;228049	307051;307052;307053;307054;307055;307056;307057;307058;307059;307060	307053			10	
MPEANQLHLPNLNSQVDSPSSEK	1	Unmodified	2534.2071	0.2071156	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	67.374	66.701	3	6.6697E-07	59294	160511_QHF_FH_JSI11i_3	66.3	52.569			1.0982	1.1916	35.088	7	5	Median	1.3487	1.1916	NaN	1	1	Median	0.93941	1.1487	22.18	2	2	Median	1.6971	1.6129	65.568	2	1	Median	1.1346	1.1596	32.356	2	1	Median	235140000	107850000	127290000	31055000	14135000	16921000	50768000	26529000	24240000	82983000	33758000	49225000	70330000	33428000	36902000	37134	5463	34989	228050;228051;228052;228053;228054;228055;228056	307061;307062;307063;307064;307065;307066;307067;307068;307069;307070;307071;307072	307062			12	
MPEDESTPEK	1	Unmodified	1161.486	0.48596922	1468	P37235;P84074	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.919	11.516	2	0.053902	8937	160511_QHF_FH_JSI9i_1	34.803	29.837			0.97366	1.0183	9.5356	4	0	Median	1.4378	1.1998	NaN	1	0	Median	0.88385	1.0386	NaN	1	0	Median	1.0303	0.99826	NaN	1	0	Median	0.92012	0.96661	NaN	1	0	Median	592230000	280680000	311550000	144320000	59033000	85291000	141660000	78941000	62723000	147110000	66354000	80753000	159140000	76354000	82784000	37135	1468	34990	228057;228058;228059;228060	307073	307073			1	
MPEFYNR	0	Unmodified	955.42219	0.42218717	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.5	4	4	3				2	2	3	3	5	6	4	37.866	33.667	2	0.0097222	18282	160513_QHF_FH_JSI11Kac_6	84.359	79.504			0.94914	1.0241	14.73	18	1	Median	1.3341	1.109	8.2161	3	0	Median	0.86173	1.028	18.132	5	1	Median	1.0117	1.0082	8.96	6	0	Median	0.72405	0.87441	13.806	4	0	Linear	15960000000	8516300000	7443300000	2975700000	1201900000	1773800000	4247100000	2530600000	1716400000	5854100000	3219800000	2634300000	2882700000	1563900000	1318700000	37136	779	34991	228061;228062;228063;228064;228065;228066;228067;228068;228069;228070;228071;228072;228073;228074;228075;228076;228077;228078	307074;307075;307076;307077;307078;307079;307080;307081;307082;307083;307084;307085;307086;307087;307088;307089;307090;307091;307092	307081			19	
MPEFYNR	0	Oxidation (M)	971.4171	0.41710179	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	20.505	19.819	2	0.025249	28448	160511_QHF_FH_JSI12i_2	66.138	43.118			0.86788	1.096	21.012	3	0	Median	1.3176	1.1586	NaN	1	0	Median	0.86788	1.096	NaN	1	0	Median	0.79738	0.78562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151380000	74633000	76743000	45944000	20258000	25686000	41139000	23155000	17984000	64293000	31220000	33073000	0	0	0	37137	779	34991	228079;228080;228081;228082	307093;307094	307093			2	
MPEMHFK	1	Unmodified	918.40918	0.40917964	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	3	4	30.28	29.631	2;3	0.0044556	25295	160511_QHF_FH_JSI11i_3	56.011	46.797			1.3588	1.286	37.123	10	0	Median	1.3714	1.1349	16.675	2	0	Median	0.87517	1.0487	NaN	1	0	Median	2.2386	2.1158	68.42	3	0	Median	1.3516	1.4506	18.713	4	0	Median	8143200000	3654000000	4489100000	1059700000	460390000	599280000	1534900000	730200000	804660000	3271700000	1382700000	1889000000	2277000000	1080800000	1196200000	37138	2286	34992	228083;228084;228085;228086;228087;228088;228089;228090;228091;228092	307095;307096;307097;307098;307099;307100;307101;307102;307103;307104;307105;307106;307107;307108;307109;307110	307098			16	
MPEMHFK	1	Oxidation (M)	934.40409	0.40409427	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	30.902	29.814	3	0.010835	25413	160511_QHF_FH_JSI12i_2	47.849	32.409			0.40071	0.44603	79.446	5	0	Median	0.32676	0.26816	NaN	1	0	Median	0.43492	0.50972	116.46	2	0	Median	1.2548	1.2045	NaN	1	0	Median	0.40071	0.44603	NaN	1	0	Median	441550000	269650000	171900000	27490000	19863000	7626400	73578000	44856000	28721000	168490000	81454000	87034000	172000000	123480000	48521000	37139	2286	34992	228093;228094;228095;228096;228097;228098	307111;307112;307113;307114	307112		1892;1893	4	
MPEMHFK	1	2 Oxidation (M)	950.39901	0.39900889	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	2	0	By MS/MS			By MS/MS	2	0		2								1			1	31.117	29.938	3	0.0071153	25414	160511_QHF_FH_JSI12i_2	44.447	36.879			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37140	2286	34992	228099;228100	307115;307116	307115		1892;1893	2	
MPEMHFKAPK	2	Acetyl (K)	1256.6046	0.60458499	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		53.794	44.638	3	0.0038893	24485	160513_QHF_FH_JSI10Kac_6	49.5	44.652			1.7604	1.8373	32.792	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2514	1.4571	NaN	1	0	Median	2.4764	2.3168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	193560000	45280000	148280000	0	0	0	11867000	5795900	6070700	181700000	39484000	142210000	0	0	0	37141	2286	34993	228101;228102	307117;307118;307119	307118	2405		3	
MPEMHFKTPK	2	Acetyl (K)	1286.6151	0.61514967	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	1	0	0	1			By MS/MS		16	0									1			1		54.761	45.032	3	0.002221	24350	160513_QHF_FH_JSI11Kac_6	57.836	48.403			0.26393	0.25799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26393	0.25799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40107000	31203000	8904700	0	0	0	0	0	0	40107000	31203000	8904700	0	0	0	37142	2286	34994	228103	307120;307121	307121	2402		2	
MPEMHFR	0	Unmodified	946.41533	0.41532765	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	30.522	29.852	3	0.0023032	24731	160511_QHF_FH_JSI12i_3	77.741	64.752			1.1208	1.2328	21.845	5	0	Median	1.1106	0.94673	NaN	1	0	Median	0.83798	0.99988	NaN	1	0	Median	1.3362	1.2608	NaN	1	0	Median	1.3351	1.4228	20.278	2	0	Median	764410000	315130000	449280000	60127000	23413000	36714000	64382000	37900000	26482000	279230000	110270000	168960000	360670000	143540000	217120000	37143	2286	34995	228104;228105;228106;228107;228108	307122;307123	307123			2	
MPEMNIK	1	Unmodified	861.40885	0.40884529	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0.756	2	3	2							2	2	2	1	33.179	32.537	2	0.023698	28232	160511_QHF_FH_JSI9i_2	55.441	45.691			1.323	1.1809	32.493	7	0	Median	1.2029	0.97252	27.455	2	0	Median	1.0185	1.2234	37.225	2	0	Median	1.2983	1.2949	49.966	2	0	Median	1.5056	1.5616	NaN	1	0	Median	9253200000	4537600000	4715600000	1358500000	578270000	780240000	3760700000	2072400000	1688300000	4019400000	1832700000	2186700000	114640000	54280000	60360000	37144	2286	34996	228109;228110;228111;228112;228113;228114;228115	307124;307125;307126;307127;307128;307129;307130;307131	307128			8	
MPEMSIK	1	Unmodified	834.39795	0.39794625	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	34.343	33.699	2	0.035999	30573	160511_QHF_FH_JSI12i_1	49.358	15.62			1.3804	1.3005	41.451	6	0	Median	2.1661	1.8252	27.751	2	0	Median	0.77894	0.94129	NaN	1	0	Median	1.2874	1.2516	65.392	2	0	Median	1.0782	1.1276	NaN	1	0	Median	387960000	184250000	203710000	93578000	32130000	61448000	79869000	45510000	34359000	165900000	82340000	83558000	48616000	24270000	24346000	37145	2286	34997	228116;228117;228118;228119;228120;228121	307132;307133	307132			2	
MPEMSIKPQK	2	Unmodified	1187.6043	0.60425064	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	30.268	30.236	3	0.00052073	25349	160511_QHF_FH_JSI12i_3	67.113	59.546			0.96422	0.94238	72.172	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6853	1.5699	NaN	1	0	Median	0.55165	0.56571	NaN	1	0	Median	609020000	287770000	321260000	0	0	0	0	0	0	218350000	75254000	143090000	390680000	212510000	178170000	37146	2286	34998	228122;228123	307134;307135;307136	307135			3	
MPETVPQEEMPGPPLNSESGEEAPTGR	0	Unmodified	2865.2797	0.2796882	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		65.841	65.404	3	0.00074244	59453	160511_QHF_FH_JSI11i_1	38.588	31.491			1.3031	1.2461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3031	1.2461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21046000	5445700	15600000	0	0	0	0	0	0	21046000	5445700	15600000	0	0	0	37147	293	35000	228124	307137	307137			1	
MPEVERK	1	Acetyl (Protein N-term);Oxidation (M)	945.45897	0.45896661	1153	P19237	TNNI1	Troponin I, slow skeletal muscle	yes	yes	0	1	1	1			By MS/MS		1	0	1											1		30.409	30.181	2	0.015981	26961	160511_QHF_FH_JSI11i_1	31.303	11.021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37148	1153	35001	228125	307138	307138		786	1	
MPFAWTAIHLMNIVSSAGSLER	0	Unmodified	2430.2188	0.21880668	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.701	88.295	3	3.0053E-05	50422	160513_QHF_FH_JSI11Kac_6	109.56	92.408			1.0264	0.96497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0264	0.96497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147970000	54237000	93733000	0	0	0	0	0	0	147970000	54237000	93733000	0	0	0	37149	4181	35002	228126	307139	307139			1	
MPFLSISSPK	1	Unmodified	1105.5842	0.58416712	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.707	1	2	1								1	2	1	69.403	68.566	2	0.0020062	59118	160511_QHF_FH_JSI12i_2	62.463	53.55			0.6078	0.58047	105.71	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5424	1.8612	NaN	1	0	Median	0.6078	0.58047	NaN	1	0	Median	0.20172	0.22556	NaN	1	0	Median	241260000	117440000	123820000	0	0	0	144920000	47645000	97274000	25485000	10695000	14790000	70858000	59102000	11757000	37150	2286	35003	228127;228128;228129;228130	307140;307141;307142;307143	307142			4	
MPFYCLYYYR	0	Oxidation (M)	1490.6363	0.63627905	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	76.614	67.389	2	0.00014688	36129	160513_QHF_FH_JSI9Kac_6	97.272	81.382			1.1327	1.0241	23.688	5	1	Median	1.1752	1.0241	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89847	0.86897	2.3895	2	0	Median	1.2432	1.3578	14.799	2	0	Median	91528000	42916000	48613000	9571300	3643900	5927400	0	0	0	45226000	22756000	22469000	36732000	16516000	20216000	37151	5350	35004	228131;228132;228133;228134;228135	307144;307145;307146;307147;307148	307146		2637	5	
MPFYCLYYYR	0	Unmodified	1474.6414	0.64136442	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	81.847	73.387	2;3	8.7787E-06	41426	160513_QHF_FH_JSI10Kac_6	108.09	95.511			0.88875	1.0444	17.764	4	0	Linear	1.2572	1.0923	NaN	1	0	Median	0.83583	0.99851	NaN	1	0	Median	0.96371	0.9235	NaN	1	0	Median	1.3219	1.3911	NaN	1	0	Median	1695200000	892890000	802270000	276670000	141560000	135110000	627420000	353710000	273710000	600900000	319490000	281410000	190170000	78127000	112040000	37152	5350	35004	228136;228137;228138;228139;228140	307149;307150;307151;307152;307153;307154;307155;307156	307156			8	
MPGNPYSSNEPGIGPLMR	0	Unmodified	1915.8921	0.89205282	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		69.616	68.856	2	0.0058143	60246	160511_QHF_FH_JSI11i_2	44.299	35.295			0.96778	1.0962	3.1231	3	0	Plateau	1.2968	1.0962	NaN	1	0	Median	0.91175	1.1167	NaN	1	0	Median	1.054	1.0507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84704000	41633000	43071000	22106000	10445000	11661000	31701000	16523000	15178000	30898000	14665000	16233000	0	0	0	37153	2947	35005	228141;228142;228143;228144	307157;307158;307159;307160;307161	307160			5	
MPHGYDTQVGER	0	Unmodified	1388.6143	0.61429805	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	18.597	18.61	3	1.6273E-05	15191	160511_QHF_FH_JSI12i_3	95.498	85.145			0.96641	0.94629	6.6276	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0687	0.99169	NaN	1	0	Median	0.87392	0.90297	NaN	1	0	Median	208790000	118410000	90383000	0	0	0	0	0	0	73053000	34690000	38363000	135740000	83717000	52020000	37154	464	35006	228145;228146	307162;307163	307163			2	
MPHLFTK	1	Unmodified	872.45784	0.4578444	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	33.238	32.514	3	0.00067562	27449	160511_QHF_FH_JSI10i_3	102.71	93.851			1.1274	1.0645	112.67	5	1	Median	1.2485	1.0288	NaN	1	0	Median	2.7116	3.1911	191	2	1	Median	1.1274	1.0645	NaN	1	0	Median	1.0941	1.1282	NaN	1	0	Median	1392400000	671010000	721430000	328850000	111900000	216950000	292080000	140390000	151680000	268110000	127830000	140280000	503410000	290880000	212520000	37155	2997	35007	228147;228148;228149;228150;228151;228152	307164;307165;307166;307167;307168;307169;307170;307171;307172;307173;307174;307175	307168			12	
MPIEGSENPERPFLEK	1	Unmodified	1871.9087	0.90874874	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	52.659	52.235	3	0.00010594	46225	160511_QHF_FH_JSI11i_3	59.261	49.512			0.72234	0.67126	52.726	3	2	Plateau	1.1207	0.95676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72234	0.67126	NaN	1	0	Median	1.8806	1.8941	NaN	1	1	Median	229910000	118980000	110930000	87725000	44500000	43225000	0	0	0	100240000	55518000	44720000	41945000	18963000	22982000	37156	428	35008	228153;228154;228155	307176;307177;307178;307179	307177			4	
MPIIPFLL	0	Unmodified	942.56125	0.56124683	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.1	4	4	4						4	4	4	4	4	103.31	101.14	2	0.0005475	94655	160511_QHF_FH_JSI11i_1	104.64	95.693			0.95616	0.96868	11.177	16	0	Median	1.2208	1.0132	12.289	4	0	Median	0.82052	0.98321	14.802	4	0	Median	0.96289	0.96186	11.994	4	0	Median	0.9039	0.94194	8.7027	4	0	Median	3601100000	1830300000	1770700000	790800000	356380000	434420000	876390000	450660000	425740000	994680000	499410000	495260000	939190000	523860000	415330000	37157	5141	35009	228156;228157;228158;228159;228160;228161;228162;228163;228164;228165;228166;228167;228168;228169;228170;228171	307180;307181;307182;307183;307184;307185;307186;307187;307188;307189;307190;307191;307192;307193;307194;307195;307196;307197;307198;307199;307200;307201;307202;307203;307204;307205;307206;307207	307182			28	
MPIIPFLL	0	Oxidation (M)	958.55616	0.55616146	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	3	2	2	103.1	103	2	0.0088017	91584	160511_QHF_FH_JSI10i_2	64.398	53.525			1.0053	1.0809	16.838	9	0	Median	1.0247	0.8557	3.8354	2	0	Median	0.95414	1.0911	2.8617	3	0	Median	0.9159	0.89399	9.5448	2	0	Median	1.1578	1.2326	16.654	2	0	Median	252210000	128800000	123410000	49010000	25193000	23817000	72093000	37827000	34265000	53757000	29653000	24104000	77352000	36130000	41222000	37158	5141	35009	228172;228173;228174;228175;228176;228177;228178;228179;228180	307208;307209;307210;307211;307212;307213;307214;307215;307216	307216		2586	9	
MPINEPAPGK	1	Oxidation (M)	1068.5274	0.52738052	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	25.922	25.115	2	0.0024575	21989	160511_QHF_FH_JSI11i_1	64.711	52.756			0.7618	0.68859	83.552	4	2	Median	0.41563	0.34252	113.25	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63017	0.62153	NaN	1	0	Median	0.95218	1.0029	NaN	1	1	Median	719610000	419380000	300220000	261180000	146370000	114810000	0	0	0	232780000	141740000	91036000	225650000	131270000	94381000	37159	1395	35010	228181;228182;228183;228184	307217;307218;307219	307217		1045	3	
MPINEPAPGK	1	Unmodified	1052.5325	0.5324659	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	33.932	25.303	2	0.018551	15048	160513_QHF_FH_JSI11Kac_3	47.869	33.093			0.97663	1.164	8.1086	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97663	1.164	NaN	1	0	Median	1.2321	1.2196	NaN	1	0	Median	0.94606	1.0415	NaN	1	0	Median	35626000	19521000	16105000	0	0	0	7937100	3875900	4061200	14129000	8121300	6007500	13560000	7523400	6036500	37160	1395	35010	228185;228186;228187	307220;307221	307220			2	
MPLATSTDHGHNLQTVQLLIK	1	Unmodified	2316.226	0.22600055	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	69.131	69.032	3;4	9.9304E-07	61450	160511_QHF_FH_JSI11i_3	77.847	54.284			1.0066	1.0165	14.82	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89418	0.83255	11.31	2	1	Median	1.0066	1.0334	NaN	1	0	Median	304960000	153860000	151100000	0	0	0	0	0	0	168220000	87866000	80359000	136740000	65992000	70746000	37161	2162	35011	228188;228189;228190	307222;307223;307224	307222			2	
MPLDDLDREDEVR	0	Unmodified	1601.7355	0.7355354	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	47.683	46.754	2;3	0.013567	41200	160511_QHF_FH_JSI10i_2	81.017	54.974			0.71057	0.83266	30.626	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.58906	0.69251	26.064	2	1	Median	NaN	NaN	NaN	0	0	Median	0.43145	0.45335	NaN	1	1	Median	118700000	73969000	44732000	0	0	0	104950000	63942000	41011000	0	0	0	13748000	10027000	3721000	37162	1895	35012	228191;228192;228193	307225;307226;307227	307227			3	
MPLFEHYTR	0	Unmodified	1192.5699	0.56991404	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	42.375	42.001	3	0.0010051	35717	160511_QHF_FH_JSI12i_3	58.699	52.856			1.0616	1.2351	37.592	4	3	Linear	0.61528	0.53599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0707	1.0162	NaN	1	1	Median	1.1363	1.1651	10.397	2	2	Median	859510000	397090000	462420000	31663000	20169000	11495000	0	0	0	251760000	125090000	126670000	576090000	251830000	324260000	37163	1313	35013	228194;228195;228196;228197	307228;307229;307230;307231	307231			4	
MPLHTIIPLLQELTK	1	Unmodified	1746.0114	0.011363315	2623	Q15061	WDR43	WD repeat-containing protein 43	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				101.75	101.57	3	9.8971E-07	82496	160511_QHF_FH_JSI9i_3	87.519	77.18			0.83378	0.67437	NaN	1	1	Median	0.83378	0.67437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63775000	34187000	29588000	63775000	34187000	29588000	0	0	0	0	0	0	0	0	0	37164	2623	35014	228198;228199	307232;307233	307233			2	
MPLIGLGTWK	1	Unmodified	1114.6209	0.62088698	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							3	3	2	2	85.369	84.718	2	1.7419E-07	69584	160511_QHF_FH_JSI9i_3	118.5	0			0.97652	0.98448	16.102	10	1	Median	1.1598	0.99196	4.983	3	1	Median	0.92668	1.0496	16.035	3	0	Median	1.0436	1.0219	39.622	2	0	Median	0.87489	0.93999	5.4699	2	0	Median	4408600000	2134800000	2273800000	778050000	308980000	469070000	1082600000	616090000	466510000	1170100000	532430000	637720000	1377800000	677280000	700520000	37165	1054	35015	228200;228201;228202;228203;228204;228205;228206;228207;228208;228209	307234;307235;307236;307237;307238;307239;307240;307241;307242;307243;307244;307245;307246;307247;307248;307249;307250	307240			17	
MPLYGLHLWLPK	1	Unmodified	1466.8108	0.81081301	797	P03905	MT-ND4	NADH-ubiquinone oxidoreductase chain 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			7						7	2	5	4	3	92.158	88.068	2;3	1.4591E-09	44560	160513_QHF_FH_JSI10Kac_6	121.09	97.719			1.0708	1.0869	53.54	13	5	Median	1.0539	0.91487	50.552	2	1	Median	0.98806	1.1898	28.364	4	1	Median	0.86455	0.81513	69.909	4	2	Median	1.0708	1.0869	82.554	3	1	Median	1262400000	577590000	684800000	326470000	108820000	217650000	450420000	201300000	249120000	288700000	154290000	134410000	196800000	113190000	83612000	37166	797	35016	228210;228211;228212;228213;228214;228215;228216;228217;228218;228219;228220;228221;228222;228223	307251;307252;307253;307254;307255;307256;307257;307258;307259;307260;307261;307262;307263;307264;307265	307265			15	
MPMFIVNTNVPR	0	Unmodified	1417.721	0.72101173	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.54		2	5						2	3	1	4	1	77.525	74.72	2	8.8842E-05	66003	160511_QHF_FH_JSI12i_3	91.867	81.635			1.1307	1.1099	14.336	8	1	Median	1.249	1.2217	8.9719	3	0	Plateau	1.0621	1.2255	NaN	1	0	Median	0.93659	0.946	12.043	3	1	Median	1.1195	1.1537	NaN	1	0	Median	645860000	286490000	359370000	182810000	72702000	110110000	33412000	14236000	19175000	312100000	141740000	170360000	117540000	57810000	59730000	37167	1048	35017	228224;228225;228226;228227;228228;228229;228230;228231;228232	307266;307267;307268;307269;307270;307271;307272;307273;307274;307275	307274			10	
MPNVPNTQPAIMKPTEEHPAYTQIAK	2	Unmodified	2905.4466	0.44663437	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		60.331	59.534	4	0.00073982	49787	160511_QHF_FH_JSI10i_3	39.893	34.685			0.56254	0.58919	25.257	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.60705	0.7258	34.008	2	0	Median	0.68529	0.63494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	293300000	181970000	111330000	0	0	0	158180000	94886000	63298000	135110000	87086000	48027000	0	0	0	37168	252	35018	228233;228234;228235	307276;307277;307278;307279	307277			4	
MPPLIADSPKAR	1	Unmodified	1294.7067	0.70674187	1826	P54646	PRKAA2	5'-AMP-activated protein kinase catalytic subunit alpha-2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	103.82	103.67	2	0.059044	89555	160511_QHF_FH_JSI12i_2	66.621	57.663			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18858000	0	18858000	0	0	0	0	0	0	0	0	0	18858000	0	18858000	37169	1826	35019	228236	307280	307280			1	
MPPSHQLDHSK	1	Unmodified	1275.603	0.60300508	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		7.5879	7.5879	3	0.0026949	5200	160511_QHF_FH_JSI11i_3	48.659	42.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37170	2261	35020	228237;228238	307281;307282	307281			2	
MPPVLEERVPINDVLAEDK	1	Unmodified	2163.1246	0.12455517	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		84.081	83.627	3	0.004556	74845	160511_QHF_FH_JSI11i_3	41.912	30.855			0.94361	0.89323	2.9223	4	0	Median	1.0433	0.8875	NaN	1	0	Median	0.70201	0.87292	NaN	1	0	Median	0.94361	0.91676	2.7675	2	0	Median	NaN	NaN	NaN	0	0	Median	265420000	136440000	128980000	55121000	25160000	29960000	67565000	41606000	25959000	142740000	69674000	73063000	0	0	0	37171	2104	35021	228239;228240;228241;228242	307283;307284;307285	307283			3	
MPPYDEQTQAFIDAAQEAR	0	Unmodified	2179.9844	0.98443288	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	79.048	78.577	2;3	7.2694E-25	69938	160511_QHF_FH_JSI9i_1	140.16	134.7			1.0688	1.003	8.8079	8	1	Median	1.1694	0.96579	1.6277	2	0	Median	0.80386	0.93781	5.4796	2	0	Median	1.1239	1.096	7.7736	2	0	Median	1.0159	1.0884	7.8497	2	1	Median	1704900000	846730000	858150000	462920000	213600000	249320000	402650000	210290000	192360000	466790000	222260000	244540000	372510000	200580000	171930000	37172	1050	35022	228243;228244;228245;228246;228247;228248;228249;228250	307286;307287;307288;307289;307290;307291;307292;307293;307294;307295;307296;307297	307295			12	
MPQLNTTVWPTMITPMLLTLFLITQLK	1	Oxidation (M)	3159.715	0.71499364	799	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				107.97	98.728	3	0.0010132	56859	160513_QHF_FH_JSI9Kac_6	51.22	43.824			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13309000	6524000	6784600	13309000	6524000	6784600	0	0	0	0	0	0	0	0	0	37173	799	35023	228251	307298	307298		313;314	1	
MPQLNTTVWPTMITPMLLTLFLITQLK	1	2 Oxidation (M)	3175.7099	0.70990827	799	P03928	MT-ATP8	ATP synthase protein 8	yes	yes	0	0	2	0		By MS/MS			16	0									1		1			107.4	101.67	3	0.00060608	60225	160513_QHF_FH_JSI10Kac_6	54.259	45.753			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55832000	22274000	33558000	0	0	0	55832000	22274000	33558000	0	0	0	0	0	0	37174	799	35023	228252	307299	307299		313;314	1	
MPRPDEEQEK	1	Unmodified	1257.566	0.56595087	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	10.821	10.868	2;3	0.00017906	8145	160511_QHF_FH_JSI12i_3	97.456	69.058			1.0276	1.0026	16.116	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0819	1.0117	6.5335	2	0	Median	0.86992	0.88186	23.407	2	0	Median	338520000	179070000	159450000	0	0	0	0	0	0	207130000	104610000	102520000	131390000	74463000	56927000	37175	3906	35024	228253;228254;228255;228256	307300;307301;307302;307303;307304;307305	307304			6	
MPSFGVSAPGK	1	Unmodified	1076.5325	0.5324659	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	48.638	47.981	2	0.0071763	41048	160511_QHF_FH_JSI12i_3	51.276	34.736			1.0541	0.97859	20.09	7	2	Median	1.4938	1.2602	NaN	1	1	Median	0.69483	0.83208	3.9787	2	0	Median	0.93497	0.90687	10.764	2	0	Median	1.1448	1.2349	3.064	2	1	Median	1533800000	735430000	798380000	216430000	88436000	128000000	413650000	227090000	186560000	430340000	193840000	236500000	473390000	226060000	247330000	37176	3405	35025	228257;228258;228259;228260;228261;228262;228263	307306;307307;307308;307309;307310	307310			5	
MPSGEFAR	0	Unmodified	893.40654	0.40653711	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	20.782	20.268	2	0.018179	16612	160511_QHF_FH_JSI11i_2	47.916	21.807			1.0805	1.0622	11.863	8	0	Median	1.2069	1.0359	NaN	1	0	Median	0.8393	0.99646	0.17168	2	0	Median	1.1961	1.2054	22.127	2	0	Median	0.96422	1.0891	5.3787	3	0	Plateau	3893800000	1887100000	2006800000	800930000	328030000	472910000	927340000	486250000	441090000	1189700000	558570000	631100000	975880000	514210000	461680000	37177	1010	35026	228264;228265;228266;228267;228268;228269;228270;228271	307311;307312;307313;307314	307313			4	
MPSGEFAR	0	Oxidation (M)	909.40145	0.40145173	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	1	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	20.971	20.204	2	0.028734	16552	160511_QHF_FH_JSI11i_2	47.082	32.669			1.04	1.2607	14.12	3	0	Median	NaN	NaN	NaN	0	0	Median	1.04	1.2607	NaN	1	0	Median	1.0191	1.0324	NaN	1	0	Median	1.2059	1.3561	NaN	1	0	Median	263450000	122910000	140530000	0	0	0	53706000	25494000	28211000	124020000	56180000	67842000	85718000	41240000	44478000	37178	1010	35026	228272;228273;228274	307315;307316	307315			2	
MPSHQGAEQQQQQHHVFISQVVTEK	1	Unmodified	2900.3988	0.39877297	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			44.192	42.646	4	0.042326	35530	160511_QHF_FH_JSI10i_3	17.943	15.295			1.0757	1.2611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0757	1.2611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17730000	7921200	9808900	0	0	0	17730000	7921200	9808900	0	0	0	0	0	0	37179	636	35027	228275	307317	307317			1	
MPSLEISAPK	1	Unmodified	1071.5634	0.56343168	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			55.612	55.216	2	0.026572	49786	160511_QHF_FH_JSI10i_1	48.091	37.677			1.046	1.2331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.046	1.2331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	256370000	167640000	88728000	0	0	0	256370000	167640000	88728000	0	0	0	0	0	0	37180	2286	35028	228276	307318	307318			1	
MPSLPSYK	1	Unmodified	921.46299	0.46298935	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.49	6	4	4				1	4	3	6	5	6	5	48.952	44.736	2	0.0052958	38587	160511_QHF_FH_JSI11i_2	66.073	47.342			1.0471	1.078	28.4	22	6	Median	1.4275	1.1703	27.148	6	3	Median	1.0146	1.219	20.287	5	1	Median	1.0344	1.0168	40.572	6	1	Median	0.96368	1.0702	12.509	5	1	Median	14516000000	6689200000	7826400000	2574100000	989100000	1585000000	3570800000	1741400000	1829400000	5105800000	2262500000	2843200000	3265000000	1696200000	1568800000	37181	1322	35029	228277;228278;228279;228280;228281;228282;228283;228284;228285;228286;228287;228288;228289;228290;228291;228292;228293;228294;228295;228296;228297;228298	307319;307320;307321;307322;307323;307324;307325;307326;307327;307328;307329;307330;307331;307332;307333;307334;307335;307336;307337;307338;307339;307340;307341;307342;307343;307344;307345;307346;307347;307348;307349;307350;307351;307352;307353;307354;307355;307356;307357;307358;307359	307349			41	
MPSMNIQTHK	1	Oxidation (M)	1201.5584	0.55836308	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	0			By MS/MS	By matching	3	0			3									2	1	27.011	26.998	3	0.0014474	23080	160511_QHF_FH_JSI11i_3	54.259	47.823			0.49858	0.49811	97.55	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1172	1.0798	122.64	2	0	Median	0.49858	0.49811	NaN	1	0	Median	285170000	164060000	121110000	0	0	0	0	0	0	127100000	61644000	65458000	158070000	102420000	55650000	37182	2286	35030	228299;228300;228301	307360;307361	307360		1894;1895	2	
MPSMNIQTHK	1	2 Oxidation (M)	1217.5533	0.5532777	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	2	0			By MS/MS		3	0			1									1		26.901	26.901	3	0.00071189	23101	160511_QHF_FH_JSI11i_3	59.418	49.985			3.4932	3.2862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4932	3.2862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59265000	19592000	39672000	0	0	0	0	0	0	59265000	19592000	39672000	0	0	0	37183	2286	35030	228302	307362	307362		1894;1895	1	
MPSMNIQTHK	1	Unmodified	1185.5634	0.56344845	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			6							1		4	1	27.243	26.962	2;3	3.8714E-15	22516	160511_QHF_FH_JSI12i_3	145.46	130.31			1.18	1.1775	84.294	5	2	Median	1.6642	1.3936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87061	0.83235	117.84	3	2	Median	1.18	1.1775	NaN	1	0	Median	1667500000	892190000	775320000	34858000	9872100	24986000	0	0	0	693600000	336620000	356990000	939050000	545700000	393350000	37184	2286	35030	228303;228304;228305;228306;228307;228308	307363;307364;307365;307366;307367;307368	307368			5	
MPSQMEHAMETMMFTFHK	1	Unmodified	2212.9236	0.92362899	1923	P60903	S100A10	Protein S100-A10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	91.758	91.737	4	0.0012793	82038	160511_QHF_FH_JSI11i_3	44.005	38.615			0.86538	0.84744	14.307	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82198	0.7659	NaN	1	0	Median	0.91108	0.93765	NaN	1	0	Median	111590000	51296000	60294000	0	0	0	0	0	0	46695000	20284000	26411000	64895000	31013000	33882000	37185	1923	35031	228309;228310	307369;307370;307371	307369			2	
MPTGEIEIK	1	Unmodified	1016.5212	0.52123251	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	41.669	40.752	2	0.003304	36995	160511_QHF_FH_JSI12i_1	60.91	25.03			1.328	1.2392	0.79492	2	0	Median	1.5133	1.2322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1653	1.2461	NaN	1	0	Median	176140000	84090000	92054000	69509000	31702000	37807000	0	0	0	0	0	0	106640000	52388000	54247000	37186	3119	35032	228311;228312	307372	307372			1	
MPTPVIK	1	Unmodified	784.4517	0.45169638	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.2	0.4	4	1								1	2	1	1	33.92	33.249	2	0.0572	29492	160511_QHF_FH_JSI10i_1	41.502	16.504			1.0174	0.99099	11.157	5	0	Median	1.1009	0.90583	NaN	1	0	Median	0.79428	0.95747	4.8656	2	0	Median	1.0174	0.99982	NaN	1	0	Median	1.1764	1.2021	NaN	1	0	Median	1103600000	595770000	507860000	89745000	40260000	49485000	653770000	371420000	282350000	243290000	129450000	113840000	116830000	54641000	62188000	37187	887	35033	228313;228314;228315;228316;228317	307373;307374	307373			2	
MPTTQETDGFQVK	1	Unmodified	1480.6868	0.68679429	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	41.355	40.844	2	0.0058963	37048	160511_QHF_FH_JSI12i_1	61.344	47.186			1.1909	1.3029	12.123	2	1	Median	NaN	NaN	NaN	0	0	Median	1.022	1.1959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3877	1.4195	NaN	1	1	Median	118720000	56914000	61810000	0	0	0	51947000	31978000	19969000	0	0	0	66777000	24935000	41841000	37188	3908	35034	228318;228319	307375;307376	307375			2	
MPVIKPDIANWELSVK	2	Unmodified	1838.9964	0.99644153	829	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	86.77	86.704	3	0.00018786	75302	160511_QHF_FH_JSI12i_3	68.481	57.007			1.4146	1.3829	23.828	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7526	1.6367	NaN	1	0	Median	1.1417	1.1685	NaN	1	0	Median	85632000	41529000	44103000	0	0	0	0	0	0	21746000	12308000	9437400	63886000	29220000	34666000	37189	829	35035	228320;228321	307377	307377			1	
MPVWYIMDEFGSR	0	Unmodified	1629.732	0.73197035	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	94.175	87.496	2	2.072E-08	45100	160513_QHF_FH_JSI12Kac_6	116.23	101.26			1.1697	1.1068	35.009	5	0	Median	0.85919	0.74474	NaN	1	0	Median	0.94181	1.1019	NaN	1	0	Median	1.5329	1.477	40.807	2	0	Median	1.1801	1.2784	NaN	1	0	Median	405200000	186990000	218210000	37855000	17603000	20252000	105020000	56475000	48546000	203540000	87579000	115960000	58788000	25338000	33450000	37190	2509	35036	228322;228323;228324;228325;228326	307378;307379;307380;307381;307382;307383;307384;307385	307383			8	
MPWQSSNHSFPTSIK	1	Unmodified	1745.8195	0.8195398	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			53.422	51.865	3	0.012532	43296	160511_QHF_FH_JSI10i_3	36.638	30.734			1.3929	1.5628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3929	1.5628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22787000	9214500	13573000	0	0	0	22787000	9214500	13573000	0	0	0	0	0	0	37191	3706	35037	228327	307386	307386			1	
MQAALEVTAR	0	Acetyl (Protein N-term)	1130.5754	0.57539335	4405	Q9BSY4	CHCHD5	Coiled-coil-helix-coiled-coil-helix domain-containing protein 5	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		69.704	69.031	2	0.00026538	62709	160511_QHF_FH_JSI11i_1	81.338	70.923			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37192	4405	35038	228328;228329	307387;307388	307387			2	
MQAGEEVTELR	0	Unmodified	1261.5973	0.597251	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.614	36.022	2	0.0043548	32595	160511_QHF_FH_JSI12i_1	65.056	39.117			0.67825	0.69394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67825	0.69394	NaN	1	1	Median	65457000	43884000	21572000	0	0	0	0	0	0	0	0	0	65457000	43884000	21572000	37193	2956	35039	228330	307389	307389			1	
MQAQMQMQMQGGDGDGGALGHHV	0	Oxidation (M)	2398.9875	0.98750289	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									1	2	3	40.328	39.188	3	1.6851E-08	33495	160511_QHF_FH_JSI11i_2	99.092	94.335			0.65287	0.6838	38.312	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67544	0.68026	NaN	1	1	Median	0.89031	0.98875	29.774	3	2	Plateau	69678000	41236000	28442000	0	0	0	0	0	0	24838000	19065000	5772800	44840000	22171000	22669000	37194	2603	35040	228331;228332;228333;228334;228335;228336	307390;307391;307392;307393;307394;307395	307393		2043;2044;2045	6	
MQAQMQMQMQGGDGDGGALGHHV	0	Unmodified	2382.9926	0.99258827	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	49.88	49.01	3	3.629E-24	42965	160511_QHF_FH_JSI9i_2	159.8	158.11			1.0557	1.1216	4.1973	5	0	Median	1.305	1.1154	NaN	1	0	Median	0.96479	1.152	3.779	2	0	Median	1.0778	1.1002	NaN	1	0	Median	1.0557	1.2123	NaN	1	0	Median	656520000	304400000	352120000	153360000	62777000	90578000	203880000	98983000	104900000	163430000	82281000	81150000	135850000	60358000	75494000	37195	2603	35040	228337;228338;228339;228340;228341;228342	307396;307397;307398;307399;307400;307401;307402;307403;307404	307399			9	
MQASIEK	1	Unmodified	805.40039	0.4003891	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.63	4	6	3		1	3	2		1	4	7	5	4	15.729	12.128	2	0.0056332	8436	160513_QHF_FH_JSI11Kac_4	94.114	49.422			1.123	1.045	58.649	19	7	Median	1.0792	0.88464	85.194	4	1	Median	0.76514	0.89282	59.574	7	2	Median	1.1777	1.1659	24.714	4	1	Median	1.4986	1.5638	59.862	4	3	Median	39971000000	18815000000	21156000000	9024100000	2880000000	6144100000	11644000000	6953400000	4690900000	10721000000	4353700000	6367000000	8582100000	4628300000	3953800000	37196	857	35041	228343;228344;228345;228346;228347;228348;228349;228350;228351;228352;228353;228354;228355;228356;228357;228358;228359;228360;228361;228362	307405;307406;307407;307408;307409;307410;307411;307412;307413;307414;307415;307416;307417;307418;307419;307420;307421;307422;307423;307424;307425;307426;307427;307428;307429;307430;307431;307432;307433	307417			29	
MQASIEK	1	Oxidation (M)	821.3953	0.39530372	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	5.51	4	1	2		4	4	2			1	4	5	7	9.348	4.938	2	0.020978	10790	160511_QHF_FH_JSI11i_1	67.032	33.294			0.9503	1.0357	63.201	17	0	Median	1.2339	0.99819	NaN	1	0	Median	0.82495	0.98299	80.108	4	0	Median	1.0438	1.0357	58.161	5	0	Median	0.9503	1.0415	70.091	7	0	Median	4397600000	3029400000	1368100000	91417000	39809000	51608000	2001400000	1399600000	601840000	1629700000	1079800000	549880000	675050000	510230000	164820000	37197	857	35041	228363;228364;228365;228366;228367;228368;228369;228370;228371;228372;228373;228374;228375;228376;228377;228378;228379	307434;307435;307436;307437;307438;307439;307440;307441;307442;307443;307444;307445	307434		392	12	
MQASIEKGGSLPK	2	Acetyl (K)	1386.7177	0.71770049	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.452						5	2				3	3	1	53.823	44.05	2	2.3015E-05	25075	160513_QHF_FH_JSI11Kac_4	100.72	89.892			0.76718	0.90125	147.53	7	2	Median	NaN	NaN	NaN	0	0	Median	0.76718	0.90125	117.7	3	1	Plateau	0.37179	0.36388	215.68	3	1	Median	0.62132	0.67736	NaN	1	0	Median	32288000	19463000	12825000	0	0	0	11406000	5688000	5717500	16878000	11271000	5606800	4003900	2503200	1500700	37198	857	35042	228380;228381;228382;228383;228384;228385;228386	307446;307447;307448;307449;307450;307451;307452;307453;307454	307450	544;548		9	
MQASIEKGGSLPK	2	Acetyl (K);Oxidation (M)	1402.7126	0.71261511	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	44.356	35.242	2	0.00061061	20042	160513_QHF_FH_JSI11Kac_3	79.693	63.439			0.49246	0.51182	64.727	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0959	1.2675	NaN	1	0	Median	0.34446	0.33676	13.624	2	0	Median	0.64045	0.70644	NaN	1	0	Median	11667000	7840600	3826600	0	0	0	1797400	888030	909350	7482200	5523500	1958700	2387700	1429200	958550	37199	857	35042	228387;228388;228389;228390	307455;307456;307457	307456	544;548	392	3	
MQASIEKGGSLPK	2	Unmodified	1344.7071	0.7071358	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	27.286	27.248	3	0.049485	22737	160511_QHF_FH_JSI12i_3	32.275	17.714			0.44748	0.44059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44748	0.44059	NaN	1	1	Median	27555000	18713000	8841700	0	0	0	0	0	0	0	0	0	27555000	18713000	8841700	37200	857	35042	228391	307458	307458			1	
MQAVQEATR	0	Unmodified	1032.5022	0.50222841	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	12.817	12.492	2	0.0011621	10171	160511_QHF_FH_JSI10i_1	70.256	14.725			0.73619	0.81493	8.4204	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66176	0.76783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81899	0.86493	NaN	1	0	Median	341610000	188210000	153410000	0	0	0	198760000	113530000	85224000	0	0	0	142860000	74674000	68184000	37201	2636	35043	228392;228393	307459	307459			1	
MQDAENVAVPEAAEER	0	Acetyl (Protein N-term)	1799.7996	0.79959222	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		62.372	61.93	2	1.5595E-07	56264	160511_QHF_FH_JSI11i_1	126.51	115.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37202	1867	35044	228394	307460	307460			1	
MQDIPEETESRDGEAVASES	0	Unmodified	2178.9223	0.92228613	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	42.15	41.432	2	5.3983E-10	37304	160511_QHF_FH_JSI10i_1	131.24	115.85			1.2097	1.2437	6.0445	4	2	Median	1.4695	1.2438	NaN	1	0	Median	1.0487	1.2436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2097	1.2775	10.12	2	2	Median	183180000	92141000	91035000	29845000	16673000	13172000	63052000	35340000	27712000	0	0	0	90278000	40128000	50150000	37203	3915	35045	228395;228396;228397;228398	307461;307462;307463;307464;307465;307466;307467	307465			7	
MQDNAPLMTALAK	1	Unmodified	1402.6949	0.69485656	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	2	3	2	64.421	63.693	2	7.8647E-07	56593	160511_QHF_FH_JSI9i_1	130.56	115.62			1.0394	1.0683	23.812	9	3	Median	1.1987	1.0046	12.865	2	1	Median	0.82591	0.98963	11.956	2	0	Median	1.0526	1.0683	14.97	3	2	Median	0.7005	0.75725	50.484	2	0	Median	1191000000	604230000	586800000	181190000	66287000	114910000	229740000	121030000	108710000	511950000	263180000	248770000	268140000	153730000	114410000	37204	899	35046	228399;228400;228401;228402;228403;228404;228405;228406;228407;228408	307468;307469;307470;307471;307472;307473;307474;307475;307476;307477;307478;307479;307480	307474			13	
MQDPNADTEWNDILR	0	Acetyl (Protein N-term)	1858.8156	0.81557663	4676	Q9H2J4	PDCL3	Phosducin-like protein 3	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	91.862	91.292	2	0.00022048	81144	160511_QHF_FH_JSI9i_1	84.718	75.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37205	4676	35047	228409;228410;228411;228412	307481;307482;307483;307484	307484			4	
MQDTSVSFGYQLDLPK	1	Unmodified	1827.8713	0.8713006	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	79.29	78.837	2;3	1.2711E-30	73726	160511_QHF_FH_JSI12i_1	195.43	172.51			0.82014	0.86239	43.296	7	3	Median	0.58951	0.49961	NaN	1	1	Median	0.75968	0.89652	49.782	2	1	Median	0.68737	0.67224	NaN	1	1	Median	0.82014	0.86239	40.2	3	0	Plateau	597050000	334880000	262180000	37767000	20369000	17398000	202150000	120110000	82038000	90727000	51212000	39515000	266410000	143180000	123220000	37206	754	35048	228413;228414;228415;228416;228417;228418;228419	307485;307486;307487;307488;307489;307490;307491	307488			7	
MQDTVVLAQGK	1	Unmodified	1188.6173	0.61725816	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.761	35.169	2	0.0087032	31813	160511_QHF_FH_JSI12i_1	58.699	31.37			0.72915	0.76559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72915	0.76559	NaN	1	0	Median	37925000	21257000	16667000	0	0	0	0	0	0	0	0	0	37925000	21257000	16667000	37207	3353	35049	228420	307492	307492			1	
MQEAMTQEVSDVFSDTTTPIK	1	Unmodified	2357.0767	0.076678281	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	87.578	87.132	2;3	9.7597E-87	79057	160511_QHF_FH_JSI10i_1	301.94	280.71			0.96689	0.9092	11.625	8	0	Median	1.2164	1.0073	17.554	2	0	Median	0.72837	0.84754	9.8087	2	0	Median	0.96689	0.93115	3.2516	2	0	Median	0.92082	0.96191	14.519	2	0	Median	1383700000	665650000	718040000	266150000	97239000	168910000	413980000	213370000	200620000	324910000	166320000	158590000	378650000	188730000	189920000	37208	1139	35050	228421;228422;228423;228424;228425;228426;228427;228428	307493;307494;307495;307496;307497;307498;307499;307500;307501;307502;307503;307504;307505;307506;307507;307508;307509;307510;307511;307512;307513;307514;307515;307516	307510			24	
MQEAMTQEVSDVFSDTTTPIK	1	Oxidation (M)	2373.0716	0.071592903	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				83.819	82.979	3	0.0027119	73825	160511_QHF_FH_JSI9i_1	44.878	36.69			2.5295	2.0671	NaN	1	1	Median	2.5295	2.0671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14985000	4343400	10642000	14985000	4343400	10642000	0	0	0	0	0	0	0	0	0	37209	1139	35050	228429	307517	307517		773	1	
MQEENITR	0	Unmodified	1019.4706	0.47059393	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.638	13.224	2	0.025964	10978	160511_QHF_FH_JSI12i_1	43.979	8.6835			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37210	1157	35051	228430	307518	307518			1	
MQEHSDQVPVGNIPR	0	Unmodified	1705.8206	0.82060243	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.72		9	1					1		2	2	4	3	36.967	35.288	2;3	1.3129E-52	30084	160511_QHF_FH_JSI11i_2	224.24	211.28			0.92919	1.026	12.84	11	2	Median	1.2684	1.0864	8.0389	2	0	Median	0.84566	1.0448	2.562	2	0	Median	0.96485	0.98895	10.176	4	2	Median	0.7714	0.8759	23.705	3	0	Median	2107700000	1069300000	1038400000	297920000	139460000	158460000	379790000	194700000	185090000	1037800000	532690000	505150000	392120000	202410000	189710000	37211	1411	35052	228431;228432;228433;228434;228435;228436;228437;228438;228439;228440;228441	307519;307520;307521;307522;307523;307524;307525;307526;307527;307528;307529;307530;307531;307532;307533;307534;307535;307536;307537	307528			19	
MQELALSEGALPR	0	Unmodified	1413.7286	0.72859953	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		62.828	62.306	2	8.9325E-07	54226	160511_QHF_FH_JSI11i_2	88.441	69.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37212	486	35053	228442;228443	307538;307539	307538			2	
MQELLMAHDFTK	1	Unmodified	1462.6949	0.69485656	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	58.952	58.033	3	0.00031827	49975	160511_QHF_FH_JSI12i_2	53.001	45.799			0.74862	0.78839	42.145	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5863	0.58522	NaN	1	1	Median	0.95589	1.0621	NaN	1	0	Median	233210000	115760000	117460000	0	0	0	0	0	0	154710000	70896000	83811000	78505000	44860000	33645000	37213	5163	35054	228444;228445	307540;307541	307540			2	
MQELLQTQDFSK	1	Unmodified	1466.7075	0.70752973	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	57.407	56.688	2	2.0509E-06	50358	160511_QHF_FH_JSI9i_1	121.08	104.05			0.63622	0.63832	178.26	4	2	Median	2.6083	2.1354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20686	0.20236	NaN	1	0	Median	0.33224	0.3402	251.46	2	1	Median	314000000	187320000	126680000	72547000	25138000	47409000	0	0	0	83381000	66749000	16633000	158070000	95433000	62639000	37214	4727	35055	228446;228447;228448;228449	307542;307543;307544;307545	307545			4	
MQELYGDGK	1	Unmodified	1039.4644	0.46444592	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	22.814	22.488	2	0.0012095	19753	160511_QHF_FH_JSI12i_1	78.939	63.5			2.219	2.2439	8.3731	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4561	2.3808	NaN	1	1	Median	2.0049	2.1149	NaN	1	1	Median	384040000	97847000	286190000	0	0	0	0	0	0	165560000	45192000	120370000	218480000	52655000	165830000	37215	366	35056	228450;228451	307546;307547	307547			2	
MQEMIAR	0	Unmodified	877.41499	0.4149933	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		20.551	19.971	2	0.031087	16961	160511_QHF_FH_JSI9i_2	51.787	29.165			0.80928	0.84629	24.146	4	0	Median	1.0408	0.88073	NaN	1	0	Median	0.55295	0.67187	26.998	2	0	Median	0.94637	0.95965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	372810000	180620000	192190000	94655000	47025000	47630000	143780000	77186000	66593000	134370000	56410000	77965000	0	0	0	37216	2603	35057	228452;228453;228454;228455	307548;307549	307548			2	
MQEQQADLQR	0	Unmodified	1245.5772	0.57718426	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.555	14.11	2	1.5916E-05	11558	160511_QHF_FH_JSI11i_1	99.788	84.637			0.82629	0.85151	14.104	3	1	Median	1.3033	1.0573	NaN	1	0	Median	0.72327	0.85151	NaN	1	1	Median	0.82629	0.81124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	312910000	158430000	154490000	83244000	33591000	49653000	108610000	66568000	42042000	121060000	58270000	62791000	0	0	0	37217	2516	35058	228456;228457;228458;228459	307550;307551;307552;307553;307554;307555	307551			6	
MQETLVGLELENER	0	Unmodified	1659.8138	0.81378572	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.205	68.908	2	0.0020228	59376	160511_QHF_FH_JSI12i_2	87.363	71.109			0.72785	0.76391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72785	0.76391	NaN	1	1	Median	17083000	11147000	5935100	0	0	0	0	0	0	0	0	0	17083000	11147000	5935100	37218	5720	35059	228460	307556	307556			1	
MQEVVANLQYDDGSGMK	1	Unmodified	1883.8393	0.83934854	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	57.986	57.334	2;3	1.3665E-30	51637	160511_QHF_FH_JSI10i_1	193.16	179.96			1.0244	1.0435	37.54	7	5	Median	0.98885	0.79956	36.178	2	2	Median	1.132	1.3456	35.95	2	1	Median	0.835	0.79126	45.557	2	2	Median	1.0244	1.0515	NaN	1	0	Median	415030000	203700000	211330000	101400000	50028000	51373000	121070000	51438000	69630000	111630000	64049000	47578000	80935000	38187000	42748000	37219	2734	35060	228461;228462;228463;228464;228465;228466;228467;228468;228469	307557;307558;307559;307560;307561;307562;307563;307564;307565;307566;307567	307563			11	
MQEVVANLQYDDGSGMKR	1	Unmodified	2039.9405	0.94045957	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	50.175	49.214	3	3.4178E-07	42432	160511_QHF_FH_JSI11i_2	109.13	92.443			1.237	1.3136	26.749	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5737	1.5871	NaN	1	1	Median	0.97241	1.0872	NaN	1	0	Median	237870000	102990000	134880000	0	0	0	0	0	0	115080000	44895000	70187000	122780000	58092000	64691000	37220	2734	35061	228470;228471	307568;307569	307569			2	
MQEVYNFNAINNSEIR	0	Unmodified	1940.9051	0.90506034	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	67.815	66.716	2	0.00011705	58886	160511_QHF_FH_JSI9i_2	93.011	75.643			1.5607	1.3223	NaN	1	1	Median	1.5607	1.3223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10740000	1655300	9084600	7474000	1655300	5818800	0	0	0	0	0	0	3265800	0	3265800	37221	943	35062	228472;228473	307570;307571	307571			2	
MQFGVPLAR	0	Unmodified	1017.543	0.54297101	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			62.191	61.333	2	0.00078079	53975	160511_QHF_FH_JSI9i_2	79.116	47.003			0.65534	0.79855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65534	0.79855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85228000	62224000	23005000	0	0	0	85228000	62224000	23005000	0	0	0	0	0	0	37222	3912	35063	228474;228475	307572;307573	307572			2	
MQFWPASYLCFR	0	Unmodified	1604.7268	0.72682539	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	92.61	83.168	2	0.0012321	44923	160513_QHF_FH_JSI12Kac_6	80.596	66.69			1.4507	1.5705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4507	1.5705	NaN	1	1	Median	11678000	3314400	8363600	0	0	0	0	0	0	0	0	0	11678000	3314400	8363600	37223	4361	35064	228476	307574	307574			1	
MQGEAHPSASLIDR	0	Acetyl (Protein N-term)	1552.7304	0.73039044	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	47.291	46.43	2	5.5269E-05	41969	160511_QHF_FH_JSI11i_1	107.93	95.311			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37224	4244	35065	228477;228478;228479;228480;228481;228482	307575;307576;307577;307578;307579;307580;307581	307575			7	
MQGGEPVSTMK	1	Acetyl (Protein N-term);2 Oxidation (M)	1237.5319	0.53187355	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	1	2	0			By MS/MS	By MS/MS	11	0				2								1	1	21.272	13.884	2	1.1212E-05	6669	160513_QHF_FH_JSI12Kacf_1	59.908	43.131			1.028	1.0963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.028	1.0963	NaN	1	0	Median	9628700	5269100	4359600	0	0	0	0	0	0	425420	425420	0	9203300	4843700	4359600	37225	4512	35066	228483;228484	307582;307583	307582		2486;2487	2	
MQGGEPVSTMK	1	Acetyl (Protein N-term);Oxidation (M)	1221.537	0.53695893	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	11	0				5							1	3	1	34.243	25.638	2	0.00054225	10810	160513_QHF_FH_JSI12Kacf_1	44.309	27.533			0.80311	0.84945	98.221	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2839	1.4165	NaN	1	0	Median	5.7683	5.6695	NaN	1	1	Median	0.80311	0.84945	NaN	1	0	Median	7612700	3373500	4239200	0	0	0	2418500	1062900	1355600	1151800	127380	1024400	4042300	2183200	1859100	37226	4512	35066	228485;228486;228487;228488;228489	307584;307585;307586;307587;307588;307589	307584		2486;2487	6	
MQGGEPVSTMK	1	Acetyl (Protein N-term)	1205.542	0.54204431	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	49.217	40.069	2	0.0012081	16575	160513_QHF_FH_JSI12Kacf_1	34.532	14.746			0.94462	0.99857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94462	0.99857	NaN	1	0	Median	2982800	1831600	1151100	0	0	0	0	0	0	0	0	0	2982800	1831600	1151100	37227	4512	35066	228490;228491;228492	307590;307591;307592	307590			3	
MQGLEAHK	1	Unmodified	912.44874	0.44873627	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	10.654	10.169	2	0.0023473	7534	160511_QHF_FH_JSI11i_2	89.355	63.618			1.7474	1.6148	95.999	3	3	Median	1.8601	1.6148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7474	1.7664	NaN	1	1	Median	0.28587	0.32082	NaN	1	1	Median	361200000	174330000	186860000	78290000	25384000	52906000	0	0	0	173010000	66188000	106820000	109900000	82762000	27137000	37228	1792	35067	228493;228494;228495	307593;307594;307595	307595			3	
MQGLEAHKYR	1	Acetyl (K)	1273.6237	0.62374052	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		34.003	24.636	3	0.0014976	13895	160513_QHF_FH_JSI11Kac_6	73.632	63.844			0.039337	0.038804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.039337	0.038804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25020000	24035000	984910	0	0	0	0	0	0	25020000	24035000	984910	0	0	0	37229	1792	35068	228496	307596	307596	1807		1	
MQGQEAVLAMSSR	0	Unmodified	1406.6646	0.66461906	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	3	1	46.327	43.803	2	6.5663E-23	37724	160511_QHF_FH_JSI11i_2	182.08	166.93			1.0711	1.082	17.581	6	0	Median	1.3024	1.1123	NaN	1	0	Median	0.79939	0.95829	NaN	1	0	Median	1.205	1.2083	26.743	3	0	Median	0.95202	1.0525	NaN	1	0	Median	1038900000	536800000	502100000	154470000	78918000	75549000	152610000	94524000	58090000	530790000	254350000	276440000	201030000	109000000	92026000	37230	2665	35069	228497;228498;228499;228500;228501;228502	307597;307598;307599;307600;307601;307602;307603;307604;307605;307606;307607	307605			10	
MQGQSPPAPTR	0	Unmodified	1168.5659	0.56589129	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.444	13.007	2	0.00036899	10387	160511_QHF_FH_JSI9i_1	88.496	70.631			1.1546	1.1727	7.0014	4	1	Median	1.6344	1.3205	NaN	1	1	Median	0.9795	1.1472	NaN	1	0	Median	1.182	1.1306	NaN	1	0	Median	1.1279	1.1987	NaN	1	0	Median	169430000	72533000	96894000	49813000	20571000	29242000	41987000	18346000	23641000	40119000	16451000	23668000	37508000	17165000	20343000	37231	2485	35070	228503;228504;228505;228506	307608;307609;307610	307610			3	
MQGSITTPGSIALAQAQAQAQVPAK	1	Unmodified	2466.2901	0.29005737	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	74.376	73.618	3	2.0797E-06	64687	160511_QHF_FH_JSI11i_2	58.324	44.452			0.96906	0.89376	24.849	4	0	Median	1.0106	0.86399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0138	1.006	11.937	2	0	Median	0.56705	0.60643	NaN	1	0	Median	120230000	61691000	58537000	37527000	14271000	23256000	0	0	0	55999000	28957000	27042000	26703000	18463000	8239200	37232	21	35071	228507;228508;228509;228510	307611;307612	307612			1	
MQHITGLTVK	1	Unmodified	1126.6169	0.61686423	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0			By MS/MS		9.5	6.5			1						1			2		35.589	30.803	2;3	0.0060402	26163	160511_QHF_FH_JSI11i_3	62.823	46.679			1.6698	1.5946	68.817	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6698	1.5946	68.817	2	2	Median	NaN	NaN	NaN	0	0	Median	36205000	11922000	24283000	0	0	0	0	0	0	36205000	11922000	24283000	0	0	0	37233	294	35072	228511;228512	307613;307614	307613			2	
MQHLIAR	0	Unmodified	867.47489	0.47489144	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.4		7	16						6	10	9	6	4	14.385	12.44	2;3	0.0028605	9336	160511_QHF_FH_JSI12i_3	66.993	55.272			1.3891	1.2814	105.35	29	18	Median	1.4881	1.219	109.77	10	7	Median	1.2148	1.4028	84.299	9	7	Median	1.1136	1.0953	82.829	6	2	Median	1.1322	1.1834	191.53	4	2	Median	24745000000	6639900000	18105000000	11380000000	2683100000	8696800000	7678900000	2077600000	5601300000	2964800000	952900000	2011900000	2721600000	926360000	1795300000	37234	1055	35073	228513;228514;228515;228516;228517;228518;228519;228520;228521;228522;228523;228524;228525;228526;228527;228528;228529;228530;228531;228532;228533;228534;228535;228536;228537;228538;228539;228540;228541	307615;307616;307617;307618;307619;307620;307621;307622;307623;307624;307625;307626;307627;307628;307629;307630;307631;307632;307633;307634;307635;307636;307637;307638;307639;307640;307641;307642;307643;307644;307645	307641			31	
MQHLIAR	0	Oxidation (M)	883.46981	0.46980607	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		6	10						2	5	7	2	4	10.577	9.4001	2;3	0.0060284	4208	160513_QHF_FH_JSI12Kac_6	60.788	46.012			0.8067	0.86303	74.62	18	1	Median	1.0671	0.8962	86.413	5	0	Median	0.70467	0.8805	39.825	7	0	Median	0.36544	0.36047	104.04	2	0	Median	0.49662	0.51705	62.673	4	1	Median	7058600000	3250100000	3808500000	3615800000	1253600000	2362200000	2573500000	1429600000	1144000000	291680000	203440000	88239000	577530000	363470000	214060000	37235	1055	35073	228542;228543;228544;228545;228546;228547;228548;228549;228550;228551;228552;228553;228554;228555;228556;228557;228558;228559	307646;307647;307648;307649;307650;307651;307652;307653;307654;307655;307656;307657;307658;307659;307660;307661;307662	307661		681	17	
MQHNLEQQIQAR	0	Unmodified	1494.7361	0.73614452	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	2	3	23.507	23.497	2;3	2.0309E-05	19450	160511_QHF_FH_JSI12i_3	116.23	71.096			1.1108	1.0409	51.334	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1132	1.0472	0.85312	2	0	Median	0.95011	0.95389	72.291	3	1	Median	272680000	143130000	129540000	0	0	0	0	0	0	138360000	68166000	70197000	134310000	74968000	59346000	37236	2470	35074	228560;228561;228562;228563;228564;228565;228566	307663;307664;307665;307666;307667;307668;307669;307670;307671	307671			9	
MQHNVLVAEVTQQLK	1	Unmodified	1736.9243	0.92433922	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	64.98	64.537	3	2.3222E-05	55517	160511_QHF_FH_JSI12i_3	105.46	94.198			1.1056	1.0109	24.126	4	0	Median	1.3538	1.1899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8876	0.85469	0.69708	2	0	Median	1.3332	1.3789	NaN	1	0	Median	338370000	164220000	174150000	31236000	16333000	14903000	0	0	0	162320000	82740000	79575000	144820000	65151000	79669000	37237	2455	35075	228567;228568;228569;228570	307672;307673;307674;307675	307675			3	
MQIFVKTLTGK	2	Acetyl (K);Oxidation (M)	1322.7268	0.72680861	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.807						1	5	8	3	2	4	5	6	73.386	63.071	2	0.00014818	33950	160513_QHF_FH_JSI11Kac_6	90.05	77.825			0.35711	0.342	40.682	17	0	Linear	0.9897	0.81835	6.7349	2	0	Median	0.84088	1.0089	13.843	4	0	Median	0.4258	0.4119	24.097	5	0	Median	0.80691	0.8808	24.963	6	0	Median	332700000	219100000	113600000	13643000	7853700	5789700	38827000	22126000	16701000	173840000	123080000	50752000	106390000	66032000	40360000	37238	2042	35076	228571;228572;228573;228574;228575;228576;228577;228578;228579;228580;228581;228582;228583;228584;228585;228586;228587	307676;307677;307678;307679;307680;307681;307682;307683;307684;307685;307686;307687;307688;307689;307690;307691;307692;307693;307694;307695;307696;307697;307698	307680	2107	1708	23	
MQIFVKTLTGK	2	Acetyl (K)	1306.7319	0.73189399	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	2	1	80.523	71.807	2	7.2709E-11	39112	160513_QHF_FH_JSI11Kac_6	136.48	115.57			0.69792	0.66394	36.912	4	0	Median	0.70869	0.61106	NaN	1	0	Median	0.82992	0.99276	NaN	1	0	Median	0.43242	0.40896	NaN	1	0	Median	0.68731	0.7214	NaN	1	0	Median	1726300000	939390000	786940000	112100000	61502000	50599000	535740000	279280000	256460000	871470000	528220000	343250000	207010000	70386000	136620000	37239	2042	35076	228588;228589;228590;228591;228592	307699;307700;307701;307702;307703;307704;307705	307700	2107		7	
MQIFVKTLTGK	2	Acetyl (K);Acetyl (Protein N-term)	1348.7425	0.74245868	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	1	0	1			By MS/MS		16	0									1			1		99.813	90.397	2	1.6447E-11	51893	160513_QHF_FH_JSI11Kac_6	132.91	121.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37240	2042	35076	228593	307706	307706	2107		1	
MQIFVKTLTGK	2	Unmodified	1264.7213	0.7213293	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1	By MS/MS				3	0			1							1				59.095	57.56	2	0.0017319	47237	160511_QHF_FH_JSI9i_3	98.943	86.896			2.9037	2.4115	NaN	1	1	Median	2.9037	2.4115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35239000	5073800	30165000	35239000	5073800	30165000	0	0	0	0	0	0	0	0	0	37241	2042	35076	228594	307707	307707			1	
MQIFVKTLTGK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1364.7374	0.7373733	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	1	1	1			By MS/MS		15	0								1				1		90.344	79.882	2	0.0026889	41488	160513_QHF_FH_JSI11Kac_5	54.608	43.457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37242	2042	35076	228595	307708	307708	2107	1708	1	
MQKEITALAPSTMK	2	Acetyl (K)	1589.8157	0.81569997	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				2	3	1	73.564	63.531	2;3	8.3325E-17	33525	160513_QHF_FH_JSI10Kac_4	144.47	129.21			0.23174	0.22366	98.195	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1763	1.4073	18.092	2	0	Median	0.26488	0.25948	3.6363	2	0	Median	NaN	NaN	NaN	0	0	Median	96717000	79544000	17172000	0	0	0	8001700	3291400	4710300	85081000	72619000	12462000	3633900	3633900	0	37243	1916;2015;2062;2070	35077	228596;228597;228598;228599;228600;228601	307709;307710;307711;307712;307713;307714;307715;307716;307717;307718	307710	1914;1919		10	
MQKEITALAPSTMK	2	Acetyl (K);Oxidation (M)	1605.8106	0.8106146	2062;1916;2070;2015	P60709;P63267;P62736;P63261;P68032;P68133	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.495						4	3				1	5	1	65.567	55.566	2;3	7.9342E-11	30384	160513_QHF_FH_JSI11Kac_4	120.84	106.42			0.26181	0.25836	95.515	5	0	Median	NaN	NaN	NaN	0	0	Median	1.7576	2.0931	NaN	1	0	Median	0.25443	0.25173	12.628	3	0	Median	0.28268	0.31021	NaN	1	0	Median	38956000	30733000	8222700	0	0	0	1964800	1014200	950590	29451000	23555000	5896300	7540300	6164500	1375800	37244	1916;2015;2062;2070	35077	228602;228603;228604;228605;228606;228607;228608	307719;307720;307721;307722;307723;307724	307721	1914;1919	1576;1577;1672	6	
MQLAAESLQEADK	1	Unmodified	1432.6868	0.68679429	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	48.354	47.853	2	5.7252E-05	43506	160511_QHF_FH_JSI12i_1	108.56	89.47			0.93508	1.0946	24.674	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93508	1.0946	NaN	1	0	Median	1.4191	1.3648	NaN	1	0	Median	0.83136	0.83393	NaN	1	0	Median	105260000	51819000	53444000	0	0	0	42417000	22499000	19919000	35534000	13639000	21895000	27312000	15681000	11630000	37245	2119	35078	228609;228610;228611	307725;307726;307727	307726			3	
MQLHGIAQPVTAVALATASLQTEK	1	Unmodified	2477.3312	0.3311939	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	96.078	95.932	3	4.0019E-16	79856	160511_QHF_FH_JSI10i_3	113.73	105.34			0.82263	0.84275	14.007	4	1	Median	0.78469	0.67256	NaN	1	1	Median	0.75863	0.86741	NaN	1	0	Median	0.97131	0.93225	NaN	1	0	Median	0.86241	0.81879	NaN	1	0	Median	116350000	57480000	58870000	10826000	7622700	3202900	19783000	10499000	9284600	54481000	22924000	31556000	31260000	16434000	14826000	37246	2245	35079	228612;228613;228614;228615	307728;307729;307730;307731;307732;307733;307734;307735;307736	307730			9	
MQLLEIITTEK	1	Unmodified	1317.7214	0.72138888	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			88.373	87.886	2	5.3152E-06	77334	160511_QHF_FH_JSI9i_2	115.18	98.504			0.5039	0.52103	7.9181	2	2	Median	0.62962	0.55103	NaN	1	1	Median	0.40329	0.49266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	287040000	206350000	80689000	125480000	85033000	40449000	161560000	121320000	40240000	0	0	0	0	0	0	37247	1507	35080	228616;228617	307737;307738	307737			2	
MQLPAGEYHK	1	Unmodified	1172.5648	0.56482866	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.008	29.093	3	0.0026766	24565	160511_QHF_FH_JSI11i_2	55.401	48.741			1.5724	1.5961	109.62	4	3	Median	2.9204	2.6243	NaN	1	1	Median	4.063	4.9966	NaN	1	1	Median	0.41566	0.41433	NaN	1	1	Median	0.84657	0.97072	NaN	1	0	Median	214340000	84882000	129460000	46811000	11770000	35041000	82610000	24301000	58309000	31035000	21616000	9418800	53881000	27195000	26687000	37248	1476	35081	228618;228619;228620;228621	307739;307740;307741;307742	307741			3	
MQLPELPK	1	Unmodified	954.52084	0.52083858	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			61.341	60.952	2	0.03729	55105	160511_QHF_FH_JSI10i_1	48.561	27.261			0.29005	0.31082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29005	0.31082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9789500	6873800	2915700	0	0	0	9789500	6873800	2915700	0	0	0	0	0	0	37249	1230	35082	228622	307743	307743			1	
MQLPSAAGLHPTGHQSK	1	Unmodified	1758.8835	0.88353704	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	2	2	3	37.696	36.916	3;4	3.2432E-06	30237	160511_QHF_FH_JSI9i_3	101.67	89.383			1.0364	1.0499	30.721	8	1	Median	1.294	1.0619	1.0243	2	1	Median	1.0753	1.2456	15.053	2	0	Median	0.98103	0.91793	18.414	2	0	Median	0.60189	0.60329	15.281	2	0	Median	852610000	456130000	396480000	148630000	59478000	89157000	199600000	95865000	103730000	253260000	133980000	119280000	251120000	166810000	84315000	37250	2617	35083	228623;228624;228625;228626;228627;228628;228629;228630;228631;228632	307744;307745;307746;307747;307748;307749;307750;307751	307747			7	
MQLQGELQAPGTYQR	0	Unmodified	1718.841	0.84100352	2814	Q3KQZ1	SLC25A35	Solute carrier family 25 member 35	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.54	53.162	2	2.0109E-05	46178	160511_QHF_FH_JSI11i_2	84.289	70.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4167900	0	4167900	0	0	0	0	0	0	0	0	0	4167900	0	4167900	37251	2814	35084	228633;228634	307752;307753	307753			2	
MQLSAELQSDTEEILSK	1	Unmodified	1920.935	0.93502307	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	91.255	91.012	2	4.8331E-06	82863	160511_QHF_FH_JSI12i_1	133.48	120.72			1.0474	1.1613	11.456	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89826	1.0709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2212	1.2593	NaN	1	0	Median	67995000	35175000	32820000	0	0	0	43949000	23825000	20124000	0	0	0	24046000	11350000	12696000	37252	552	35085	228635;228636	307754;307755;307756	307754			3	
MQLSEIMER	0	Unmodified	1135.5366	0.536565	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			58.351	57.464	2	0.0059595	50877	160511_QHF_FH_JSI10i_2	55.112	38.572			1.3342	1.6224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3342	1.6224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36348000	14580000	21767000	0	0	0	36348000	14580000	21767000	0	0	0	0	0	0	37253	2081	35086	228637	307757	307757			1	
MQLSGEGAK	1	Unmodified	919.44332	0.44331654	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.25	5.63	3						1			1	1	2		16.911	14.651	2	0.0012499	12198	160511_QHF_FH_JSI9i_1	78.334	1.2768			0.41272	0.43942	62.011	4	4	Median	0.95432	0.77665	NaN	1	1	Median	0.372	0.43793	NaN	1	1	Median	0.28618	0.27675	65.867	2	2	Median	NaN	NaN	NaN	0	0	Median	1887400000	1372500000	514920000	286240000	152430000	133810000	954290000	743970000	210320000	646850000	476060000	170790000	0	0	0	37254	2198	35087	228638;228639;228640;228641	307758;307759;307760;307761	307761			4	
MQLVKKDNEKERHK	4	3 Acetyl (K);Oxidation (M)	1923.9836	0.98364501	3026	Q68DK7	MSL1	Male-specific lethal 1 homolog	yes	yes	3	0	1	4		By MS/MS			13	0						1					1			37.395	28.588	2	0.022275	15827	160513_QHF_FH_JSI10Kac_3	31.639	9.8806			0.741	0.88707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.741	0.88707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31775000	18366000	13409000	0	0	0	31775000	18366000	13409000	0	0	0	0	0	0	37255	3026	35088	228642	307762	307762	2740;2741;2742		1	
MQMLEDEDDLAYAETEK	1	Unmodified	2029.8496	0.84963846	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	67.97	67.385	2	1.2975E-23	60095	160511_QHF_FH_JSI9i_1	132.86	117.98			1.0355	1.1754	14.18	4	0	Linear	1.0381	0.82821	NaN	1	0	Median	0.9511	1.1495	NaN	1	0	Median	1.0329	1.0031	NaN	1	0	Median	1.0529	1.0775	NaN	1	0	Median	206840000	110250000	96595000	26284000	13909000	12375000	79931000	39898000	40033000	42761000	24700000	18061000	57866000	31740000	26126000	37256	2517	35089	228643;228644;228645;228646;228647	307763;307764;307765;307766;307767;307768;307769;307770;307771;307772	307772			10	
MQNDAGEFVDLYVPR	0	Acetyl (Protein N-term);Oxidation (M)	1810.8196	0.81959938	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	1	0				By MS/MS	1	0	1												1	90.162	89.712	2	4.1663E-07	81719	160511_QHF_FH_JSI12i_1	145.29	135.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37257	2059	35090	228648	307773	307773		1719	1	
MQNDAGEFVDLYVPR	0	Acetyl (Protein N-term)	1794.8247	0.82468476	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	100.83	100.71	2;3	3.8556E-07	91282	160511_QHF_FH_JSI10i_1	186.17	171.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37258	2059	35090	228649;228650;228651;228652	307774;307775;307776;307777	307776			4	
MQNDAGEFVDLYVPRK	1	Acetyl (Protein N-term);Oxidation (M)	1938.9146	0.9145624	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.072	75.577	2;3	2.3293E-06	67084	160511_QHF_FH_JSI9i_1	117.79	108.74			11.087	12.987	119.41	5	4	Median	24.183	19.9	NaN	1	1	Median	11.087	12.987	NaN	1	1	Median	9.8406	9.7211	NaN	1	1	Median	6.2414	6.6168	219.57	2	1	Median	436680000	32928000	403750000	75398000	1829500	73569000	97007000	5778500	91229000	113110000	6510600	106600000	151170000	18809000	132360000	37259	2059	35091	228653;228654;228655;228656;228657	307778;307779;307780;307781;307782	307782		1719	5	
MQNDAGEFVDLYVPRK	1	Acetyl (Protein N-term)	1922.9196	0.91964777	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.674	10	7	2							3	7	4	5	87.287	86.714	2;3	1.0984E-106	78983	160511_QHF_FH_JSI11i_1	308.37	293.81			1.2345	1.1592	218.18	14	10	Median	3.7335	3.1648	116.98	3	2	Median	0.45181	0.53658	259.61	4	3	Median	2.9528	2.9005	208.5	3	2	Median	0.49408	0.53969	282.4	4	3	Median	4011700000	1741700000	2270000000	644050000	133360000	510690000	1570100000	810480000	759620000	799040000	112780000	686260000	998520000	685080000	313440000	37260	2059	35091	228658;228659;228660;228661;228662;228663;228664;228665;228666;228667;228668;228669;228670;228671;228672;228673;228674;228675;228676	307783;307784;307785;307786;307787;307788;307789;307790;307791;307792;307793;307794;307795;307796;307797;307798;307799;307800;307801;307802;307803;307804;307805;307806;307807;307808	307783			26	
MQNDTAENETTEK	1	Unmodified	1509.6253	0.62531625	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.4	5.39	3				2						1	4		10.3	7.7579	2	3.6145E-53	6892	160511_QHF_FH_JSI10i_1	221.55	217.25			0.8199	0.88241	16.682	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.63947	0.76372	NaN	1	0	Median	1.0759	1.0196	0.0035685	2	1	Median	NaN	NaN	NaN	0	0	Median	434760000	222180000	212580000	0	0	0	264170000	130310000	133860000	170590000	91866000	78719000	0	0	0	37261	2233	35092	228677;228678;228679;228680;228681	307809;307810;307811;307812;307813;307814	307814			6	
MQNDTAENETTEK	1	Oxidation (M)	1525.6202	0.62023087	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	1	0	By MS/MS				1	0	2									2				9.9244	9.1913	2	0.00075063	4109	160511_QHF_FH_JSI9i_1	71.555	65.114			0.8263	0.6898	NaN	1	0	Median	0.8263	0.6898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23621000	14043000	9577700	23621000	14043000	9577700	0	0	0	0	0	0	0	0	0	37262	2233	35092	228682;228683	307815;307816	307816		1851	2	
MQNHFGAVR	0	Unmodified	1058.508	0.50798249	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			15.281	14.297	3	0.046105	11537	160511_QHF_FH_JSI10i_3	18.373	11.223			1.2484	1.2131	9.5918	2	0	Median	1.4021	1.1336	NaN	1	0	Median	1.1115	1.2983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71574000	34197000	37377000	43924000	18303000	25621000	27649000	15894000	11756000	0	0	0	0	0	0	37263	3258	35093	228684;228685	307817	307817			1	
MQNVINTVK	1	Acetyl (Protein N-term)	1087.5696	0.56957969	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.706	68.138	2	1.0168E-06	62035	160511_QHF_FH_JSI12i_1	95.741	79.597			1.1303	1.0879	8.3078	4	0	Median	1.1754	0.94638	NaN	1	0	Median	0.90124	1.0571	NaN	1	0	Median	1.1565	1.1366	NaN	1	0	Median	1.1046	1.1196	NaN	1	0	Median	708120000	348900000	359210000	178810000	81354000	97452000	159020000	88065000	70950000	192060000	90714000	101340000	178240000	88768000	89471000	37264	4987	35094	228686;228687;228688;228689	307818;307819;307820;307821;307822;307823;307824	307821			7	
MQPASAK	1	Unmodified	731.36361	0.36360966	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.43	4	4	3				1			3	3	3	3	5.8348	4.881	2	0.0055575	3415	160511_QHF_FH_JSI12i_1	94.407	68.298			0.94957	0.86182	18.261	12	0	Median	1.0621	0.87368	6.1169	3	0	Median	0.73006	0.85011	13.346	3	0	Plateau	0.80407	0.79975	16.342	3	0	Median	0.92887	0.99282	10.687	3	0	Plateau	5665600000	2923300000	2742300000	1108200000	482290000	625930000	1569300000	959920000	609400000	1288800000	643550000	645230000	1699300000	837590000	861740000	37265	2642	35095	228690;228691;228692;228693;228694;228695;228696;228697;228698;228699;228700;228701	307825;307826;307827;307828;307829;307830;307831;307832;307833;307834;307835;307836;307837;307838;307839;307840;307841	307830			17	
MQPASAK	1	Acetyl (Protein N-term);Oxidation (M)	789.36909	0.36908897	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	1	1	0	By matching	By MS/MS	By MS/MS		4.33	4.71	4			2						1	2	3		11.726	8.9682	2	0.0033796	1992	160513_QHF_FH_JSI11Kac_1	58.981	50.641			0.88839	0.94238	77.883	6	1	Median	1.1679	0.96929	NaN	1	0	Median	0.75959	0.87734	8.9285	2	0	Median	0.97135	0.95031	117.82	3	1	Median	NaN	NaN	NaN	0	0	Median	590990000	296300000	294690000	161460000	76135000	85323000	161200000	88301000	72897000	268330000	131860000	136470000	0	0	0	37266	2642	35095	228702;228703;228704;228705;228706;228707	307842;307843;307844;307845;307846;307847	307845		2061	6	
MQPASAK	1	Acetyl (Protein N-term)	773.37417	0.37417435	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.82	8	1		2						2	3	4	2	15.134	13.133	1;2	0.0043132	11271	160511_QHF_FH_JSI11i_1	58.604	48.855			0.99357	1.0027	87.343	9	1	Median	1.2096	0.97251	6.7797	2	0	Median	0.24565	0.28536	192.01	2	1	Median	1.0356	1.0027	14.982	3	0	Median	0.90819	0.97401	12.888	2	0	Median	5727500000	2788300000	2939300000	1624600000	654850000	969770000	1378300000	709480000	668860000	1149200000	631570000	517600000	1575400000	792380000	783030000	37267	2642	35095	228708;228709;228710;228711;228712;228713;228714;228715;228716;228717;228718	307848;307849;307850;307851;307852;307853;307854	307848			6	
MQPASAKWYDRR	1	Acetyl (K);Acetyl (Protein N-term)	1591.7565	0.75654561	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	1	1	0	2		By MS/MS			16	0									1		1			62.275	53.911	2	0.0017725	29699	160513_QHF_FH_JSI10Kac_6	77.358	58.613			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37268	2642	35096	228719	307855	307855	2603		1	
MQPDQQVVINCAIVR	0	Unmodified	1769.8917	0.89165888	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	61.758	61.265	2	0.0002574	55570	160511_QHF_FH_JSI11i_1	101.71	65.193			0.74842	0.79918	27.105	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.54949	0.65441	NaN	1	1	Median	1.0193	0.97596	NaN	1	1	Median	1.0939	1.0974	NaN	1	1	Median	108680000	62236000	46449000	0	0	0	37124000	24115000	13010000	46564000	25912000	20653000	24996000	12209000	12787000	37269	1710	35097	228720;228721;228722	307856;307857;307858;307859	307856			4	
MQPGPVFGNMDK	1	Unmodified	1319.6002	0.60022789	4644	Q9H0V9	LMAN2L	VIP36-like protein	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	52.562	51.17	2	0.0025539	43789	160511_QHF_FH_JSI12i_2	70.028	45.873			0.83776	0.9376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83776	0.9376	NaN	1	1	Median	15461000	10853000	4607800	0	0	0	0	0	0	0	0	0	15461000	10853000	4607800	37270	4644	35098	228723;228724	307860;307861	307860			2	
MQPQSVLHSGYFHPLLR	0	Acetyl (Protein N-term)	2051.0411	0.041100314	1037	P13716	ALAD	Delta-aminolevulinic acid dehydratase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.953	84.867	3	0.00026125	75790	160511_QHF_FH_JSI11i_3	58.83	43.902			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37271	1037	35099	228725;228726	307862;307863	307862			2	
MQQEAQHVLFLSK	1	Unmodified	1557.7973	0.79734779	3129	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				58.321	49.17	3	0.019117	26151	160513_QHF_FH_JSI9Kac_6	38.995	28.642			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37272	3129	35100	228727	307864	307864			1	
MQQEITFQQVMSQIANVKK	2	Unmodified	2250.1501	0.15005842	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			98.252	97.991	3	0.056198	81124	160511_QHF_FH_JSI10i_3	21.987	12.457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4279100	4279100	0	0	0	0	4279100	4279100	0	0	0	0	0	0	0	37273	3970	35101	228728	307865	307865			1	
MQQENMKPQEQLTLEPYER	1	Unmodified	2391.1199	0.1198805	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.011	53.047	3	1.0542E-10	46014	160511_QHF_FH_JSI11i_2	130.56	118.6			0.84831	0.83223	5.0829	4	1	Linear	1.0415	0.89086	NaN	1	0	Median	0.78528	0.96951	NaN	1	1	Median	0.882	0.86482	NaN	1	0	Median	0.81591	0.87966	NaN	1	0	Median	116430000	65640000	50793000	21185000	10626000	10559000	28999000	19903000	9095300	41653000	19625000	22028000	24596000	15485000	9111000	37274	1203	35102	228729;228730;228731;228732	307866;307867;307868;307869;307870;307871;307872;307873;307874;307875;307876;307877	307876			12	
MQQHFEFEYQTK	1	Unmodified	1614.7137	0.71367774	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		1	2						2	1	1	1	2	46.29	42.401	3	0.00018656	36445	160511_QHF_FH_JSI12i_2	77.894	71.166			1.2186	1.0367	40.165	5	2	Median	1.2186	1.0367	NaN	1	0	Median	0.61561	0.73222	NaN	1	1	Median	1.9972	1.9171	NaN	1	0	Median	1.0802	1.128	41.249	2	1	Median	190430000	85111000	105320000	8224300	4303600	3920700	8117100	5525400	2591700	54572000	18919000	35653000	119510000	56363000	63150000	37275	900	35103	228733;228734;228735;228736;228737	307878;307879;307880;307881;307882;307883	307879			6	
MQQNIQELEEQLEEEESAR	0	Unmodified	2332.0489	0.048883626	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	10	6								6	4	4	2	81.609	81.12	2;3	5.176E-138	73705	160511_QHF_FH_JSI10i_1	354.01	339.58			1.0154	1.1157	38.855	10	4	Median	1.126	0.93892	24.787	2	1	Median	0.8683	1.0035	16.29	3	1	Median	1.1798	1.1397	53.544	3	1	Median	1.5143	1.5727	48.948	2	1	Median	1376100000	694510000	681640000	141990000	66445000	75546000	505010000	274940000	230070000	335080000	163560000	171530000	394060000	189570000	204490000	37276	1436	35104	228738;228739;228740;228741;228742;228743;228744;228745;228746;228747;228748;228749;228750;228751;228752;228753	307884;307885;307886;307887;307888;307889;307890;307891;307892;307893;307894;307895;307896;307897;307898;307899;307900;307901;307902;307903;307904;307905	307893			22	
MQQNIQELEEQLEEEESARQK	1	Unmodified	2588.2024	0.20242415	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			73.494	72.706	3	2.3819E-05	64652	160511_QHF_FH_JSI10i_2	73.448	58.9			1.4313	1.4632	25.697	2	1	Median	1.4266	1.22	NaN	1	0	Median	1.436	1.7547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92061000	40773000	51288000	37514000	13899000	23615000	54547000	26874000	27673000	0	0	0	0	0	0	37277	1436	35105	228754;228755	307906;307907	307907			2	
MQQQLDEYQELLDIK	1	Unmodified	1892.919	0.91897907	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.696	11	4	2							4	4	5	4	87.118	86.577	2;3	1.1343E-87	76895	160511_QHF_FH_JSI9i_1	292.57	236.34			1.1033	1.0181	18.866	15	5	Median	1.1574	0.9632	23.563	4	2	Median	0.83221	0.98186	18.17	4	1	Median	1.1115	1.0725	2.9986	3	0	Median	1.0589	1.1483	19.336	4	2	Median	5818000000	2991500000	2826500000	824080000	404460000	419620000	2250000000	1263100000	986910000	1310900000	607890000	702990000	1433100000	716060000	717000000	37278	791	35106	228756;228757;228758;228759;228760;228761;228762;228763;228764;228765;228766;228767;228768;228769;228770;228771;228772	307908;307909;307910;307911;307912;307913;307914;307915;307916;307917;307918;307919;307920;307921;307922;307923;307924;307925;307926;307927;307928;307929;307930;307931;307932;307933;307934;307935;307936;307937;307938	307933			31	
MQQQLDEYQELLDIK	1	Oxidation (M)	1908.9139	0.91389369	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	82.996	82.541	2;3	9.7731E-07	74972	160511_QHF_FH_JSI11i_1	137.59	101.28			1.012	0.93416	25.568	6	3	Median	1.1341	0.93704	NaN	1	0	Median	0.70036	0.83057	NaN	1	1	Median	1.1857	1.1567	39.226	2	0	Median	1.0611	1.1308	27.452	2	2	Median	451850000	233160000	218690000	67227000	31759000	35468000	133250000	79180000	54068000	122260000	54888000	67374000	129120000	67335000	61782000	37279	791	35106	228773;228774;228775;228776;228777;228778	307939;307940;307941;307942;307943;307944;307945;307946;307947;307948;307949;307950;307951;307952;307953	307939		304	15	
MQQQPTR	0	Unmodified	887.42834	0.42833518	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.2104	4.9818	2	0.0029888	2812	160511_QHF_FH_JSI11i_1	107.43	71.623			0.95113	0.93356	2.5534	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80012	0.93137	NaN	1	0	Median	0.96077	0.93356	NaN	1	0	Median	0.95113	0.97458	NaN	1	0	Median	394620000	213240000	181390000	0	0	0	138690000	79521000	59165000	143940000	71665000	72277000	112000000	62051000	49944000	37280	5014	35107	228779;228780;228781	307954;307955;307956;307957;307958	307954			5	
MQQSVYVK	1	Unmodified	981.49535	0.49535211	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1			1	1	2	1	21.285	19.325	2	0.0016051	16623	160511_QHF_FH_JSI10i_1	87.251	56.533			0.64201	0.64175	46.431	5	1	Median	1.3694	1.1987	NaN	1	1	Median	0.54724	0.64175	NaN	1	0	Median	0.81209	0.79894	34.902	2	0	Median	0.35451	0.36905	NaN	1	0	Median	352830000	207590000	145240000	45771000	23804000	21967000	107540000	64646000	42894000	104940000	51607000	53332000	94577000	67533000	27044000	37281	3328	35108	228782;228783;228784;228785;228786	307959;307960;307961;307962;307963	307961			5	
MQQSVYVKDDK	2	Acetyl (K)	1381.6548	0.65476588	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		39.177	30.103	2	0.0010136	17378	160513_QHF_FH_JSI11Kac_3	86.624	71.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1909100	1909100	0	0	0	0	0	0	0	1909100	1909100	0	0	0	0	37282	3328	35109	228787	307964	307964	2835		1	
MQQYDLQGQPYGTR	0	Unmodified	1683.7675	0.76750423	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	40.487	39.852	2	5.3032E-11	35300	160511_QHF_FH_JSI9i_1	115.57	84.962			1.2759	1.3694	11.863	4	2	Median	1.9453	1.5976	NaN	1	1	Median	1.1097	1.3319	NaN	1	1	Median	1.2184	1.2017	NaN	1	0	Median	1.3362	1.4078	NaN	1	0	Median	321000000	141670000	179330000	54455000	18492000	35964000	78510000	34370000	44141000	94132000	44523000	49610000	93907000	44286000	49620000	37283	3951	35110	228788;228789;228790;228791;228792	307965;307966;307967;307968;307969;307970;307971	307971			7	
MQSDDVIWDTLGNK	1	Acetyl (Protein N-term)	1662.7559	0.75593649	4531	Q9BXY0	MAK16	Protein MAK16 homolog	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				97.906	97.584	2	0.0018619	86251	160511_QHF_FH_JSI9i_1	52.693	36.802			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37284	4531	35111	228793	307972	307972			1	
MQSFGMK	1	Unmodified	827.36698	0.36698048	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.9	2	8	3					4	1	3	6	4	5	28.116	24.942	2	0.0060359	21110	160511_QHF_FH_JSI12i_2	94.407	76.64			1.1663	1.105	78.269	18	6	Median	1.3281	1.0905	18.442	3	0	Median	0.89566	1.0495	73.498	6	3	Median	1.1663	1.1312	105.1	4	1	Median	1.2941	1.3094	95.099	5	2	Median	6322900000	2879400000	3443500000	794720000	348630000	446090000	1607300000	937640000	669700000	2010700000	817170000	1193500000	1910200000	775970000	1134200000	37285	309	35112	228794;228795;228796;228797;228798;228799;228800;228801;228802;228803;228804;228805;228806;228807;228808;228809;228810;228811	307973;307974;307975;307976;307977;307978;307979;307980;307981;307982;307983;307984;307985;307986;307987;307988;307989;307990;307991;307992;307993;307994;307995;307996	307975			24	
MQSINAGFQSLK	1	Unmodified	1322.6653	0.66527099	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.927	53.55	2	0.01197	45908	160511_QHF_FH_JSI12i_2	55.353	35.023			1.0573	1.111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.111	NaN	1	1	Median	13671000	6655300	7015200	0	0	0	0	0	0	0	0	0	13671000	6655300	7015200	37286	2174	35113	228812	307997	307997			1	
MQSNKTFNLEK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1438.6762	0.67622961	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	0.816				4	4	4				1	4	4	3	59.672	50.242	2	1.7307E-73	22517	160513_QHF_FH_JSI12Kac_2	150.61	116.42			1.082	1.1736	25.675	9	0	Median	NaN	NaN	NaN	0	0	Median	1.0011	1.1477	3.1487	2	0	Median	1.5587	1.5348	26.186	4	0	Median	1.0625	1.1103	4.5097	3	0	Plateau	464780000	204270000	260510000	0	0	0	102170000	50077000	52097000	142630000	54613000	88017000	219970000	99583000	120390000	37287	2644	35114	228813;228814;228815;228816;228817;228818;228819;228820;228821;228822;228823;228824	307998;307999;308000;308001;308002;308003;308004;308005;308006;308007;308008;308009;308010;308011;308012;308013;308014	308014	2609;2610	2068	17	
MQSNKTFNLEK	2	Acetyl (K);Acetyl (Protein N-term)	1422.6813	0.68131498	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.9	0.927				3	4		1				2	3	3	72.299	63.116	2	1.9302E-73	25096	160513_QHF_FH_JSI12Kacf_1	150.35	114.91			1.1291	1.2112	20.89	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0291	1.1762	4.1513	2	0	Median	1.7501	1.7025	9.5369	2	0	Median	1.1291	1.1766	20.282	3	0	Median	244290000	107250000	137050000	0	0	0	86302000	41858000	44444000	45744000	15380000	30365000	112250000	50010000	62237000	37288	2644	35114	228825;228826;228827;228828;228829;228830;228831;228832	308015;308016;308017;308018;308019;308020;308021;308022;308023;308024;308025;308026;308027	308021	2609;2610		13	
MQSPAVLVTSR	0	Acetyl (Protein N-term)	1229.6438	0.64380726	2863	Q53T59	HS1BP3	HCLS1-binding protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	68.438	67.643	2	0.0035727	60162	160511_QHF_FH_JSI9i_1	54.486	47.006			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37289	2863	35115	228833;228834;228835	308028;308029;308030	308030			3	
MQSTLISAAR	0	Unmodified	1076.5648	0.56482866	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.75	6.16	1	3	1				1	2			2	5	1	36.44	32.3	2	1.1389E-05	27415	160511_QHF_FH_JSI12i_2	103.7	65.462			0.91905	1.0313	45.344	8	1	Median	NaN	NaN	NaN	0	0	Median	0.83569	0.99406	16.591	2	0	Median	1.0661	1.0417	57.566	5	1	Median	0.90817	1.0211	NaN	1	0	Median	495510000	250660000	244850000	0	0	0	117640000	66805000	50836000	266790000	129390000	137390000	111080000	54458000	56625000	37290	1557	35116	228836;228837;228838;228839;228840;228841;228842;228843	308031;308032;308033;308034;308035;308036;308037;308038;308039	308033			9	
MQTADHPEVVPFLYNR	0	Unmodified	1915.9251	0.9250675	5272	Q9UER7	DAXX	Death domain-associated protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	67.626	66.929	3	0.0018771	59598	160511_QHF_FH_JSI11i_3	50.653	46.385			1.0639	1.1728	0.067218	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96167	1.1734	NaN	1	0	Median	1.177	1.1723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81058000	42879000	38179000	0	0	0	37993000	20262000	17731000	43065000	22617000	20448000	0	0	0	37291	5272	35117	228844;228845;228846;228847	308040;308041;308042;308043	308040			4	
MQTEAQHER	0	Unmodified	1128.4982	0.49820566	4677	Q9H2K8	TAOK3	Serine/threonine-protein kinase TAO3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.8334	4.6393	2	0.010474	2383	160511_QHF_FH_JSI11i_2	59.245	51.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13465000	13465000	0	0	0	0	0	0	0	13465000	13465000	0	0	0	0	37292	4677	35118	228848	308044	308044			1	
MQTNQTPPTYNK	1	Unmodified	1421.6609	0.66091389	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.346	19.837	2	5.8303E-05	16948	160511_QHF_FH_JSI11i_1	97.452	80.781			0.9058	0.9213	17.541	4	0	Linear	0.95349	0.77528	NaN	1	0	Median	0.57179	0.6522	NaN	1	0	Median	0.88911	0.86937	NaN	1	0	Median	0.9228	0.98545	NaN	1	0	Median	206870000	107330000	99533000	55163000	27190000	27973000	35317000	21648000	13668000	55982000	31224000	24758000	60404000	27271000	33133000	37293	3926	35119	228849;228850;228851;228852	308045;308046;308047;308048;308049;308050	308045			6	
MQTPVNIPVPVLR	0	Acetyl (Protein N-term)	1504.8436	0.8435697	4776	Q9H840	GEMIN7	Gem-associated protein 7	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				101.67	101.5	2	6.6461E-12	89681	160511_QHF_FH_JSI9i_1	142.98	125.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37294	4776	35120	228853	308051	308051			1	
MQTQQVNTLK	1	Unmodified	1189.6125	0.61250714	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.646	21.125	2	2.5358E-07	18031	160511_QHF_FH_JSI9i_1	114.4	72.953			0.82184	0.73008	23.085	4	2	Median	0.87294	0.72837	NaN	1	0	Median	0.56527	0.66177	NaN	1	1	Median	0.77373	0.73179	NaN	1	1	Median	1.0817	1.1106	NaN	1	0	Median	299620000	162530000	137100000	77991000	35924000	42067000	57886000	39599000	18286000	62831000	38324000	24506000	100920000	48678000	52237000	37295	475	35121	228854;228855;228856;228857	308052;308053;308054;308055	308055			4	
MQTYQDAESR	0	Unmodified	1227.519	0.51900068	4778	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.008	13.578	2	0.044612	11273	160511_QHF_FH_JSI12i_1	44.309	31.683			1.5495	1.5979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5495	1.5979	NaN	1	1	Median	30873000	11086000	19786000	0	0	0	0	0	0	0	0	0	30873000	11086000	19786000	37296	4778	35122	228858	308056	308056			1	
MQVANIDKFEEK	2	Unmodified	1450.7126	0.71261511	5477	Q9UQ90	SPG7	Paraplegin	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	46.231	45.989	3	0.0041873	39325	160511_QHF_FH_JSI12i_3	82.362	68.104			1.058	1.0892	37.988	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.058	1.0892	37.988	2	1	Median	77183000	41803000	35380000	0	0	0	0	0	0	0	0	0	77183000	41803000	35380000	37297	5477	35123	228859;228860	308057;308058	308058			1	
MQVDPQK	1	Unmodified	844.41129	0.41128813	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.84	4	2	1			1				4	1	2	1	13.784	10.872	2	0.0034484	10512	160511_QHF_FH_JSI12i_1	104.45	53.482			1.0487	0.98322	18.724	7	0	Median	1.2734	1.0667	14.502	3	0	Median	0.68254	0.82065	NaN	1	0	Median	1.2038	1.1821	26.048	2	0	Median	0.90327	0.95872	NaN	1	0	Median	10337000000	5113100000	5223500000	2848200000	1307800000	1540400000	2541100000	1277300000	1263800000	2481600000	1254700000	1226900000	2465700000	1273400000	1192300000	37298	2146	35124	228861;228862;228863;228864;228865;228866;228867;228868	308059;308060;308061;308062;308063;308064;308065;308066;308067;308068;308069;308070;308071	308062			13	
MQVDPQK	1	Oxidation (M)	860.4062	0.40620276	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	13.257	12.773	2	0.014228	10557	160511_QHF_FH_JSI12i_1	79.116	48.612			0.86817	0.90011	74.141	3	0	Plateau	0.2679	0.21435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97879	0.94175	NaN	1	0	Median	0.45138	0.48536	NaN	1	0	Median	1140300000	682220000	458100000	251860000	186610000	65241000	0	0	0	500910000	261580000	239330000	387550000	234030000	153530000	37299	2146	35124	228869;228870;228871	308072;308073	308073		1791	2	
MQVDPQKYK	2	Acetyl (K)	1177.5801	0.58014438	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.4							4	1			1	3	1	45.032	34.82	2	0.0016563	20324	160513_QHF_FH_JSI12Kac_4	87.639	64.568			0.58642	0.62981	52.584	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85267	1.0205	NaN	1	0	Median	0.36122	0.35693	NaN	1	0	Median	0.58642	0.62981	NaN	1	0	Median	167870000	116900000	50966000	0	0	0	25119000	13480000	11639000	124210000	92651000	31557000	18541000	10771000	7769800	37300	2146	35125	228872;228873;228874;228875;228876	308074;308075;308076;308077;308078;308079;308080;308081	308080	2247		8	
MQVDPQKYK	2	Acetyl (K);Oxidation (M)	1193.5751	0.575059	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	30.152	21.792	2	0.014245	13277	160513_QHF_FH_JSI11Kac_3	48.283	33.617			0.33669	0.33326	56.008	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87086	1.0215	NaN	1	0	Median	0.33669	0.33326	NaN	1	0	Median	0.54238	0.5836	NaN	1	0	Median	25302000	16830000	8472100	0	0	0	5180200	2704800	2475400	14050000	10146000	3903800	6072500	3979600	2092900	37301	2146	35125	228877;228878;228879	308082;308083;308084;308085	308082	2247	1791	4	
MQVDQEEGHQK	1	Unmodified	1327.5827	0.58266357	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		3								1			2	8.9594	8.4092	2;3	0.00037197	6091	160511_QHF_FH_JSI12i_2	81.972	61.07			1.184	1.1625	48.669	2	0	Median	1.9064	1.6401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73537	0.82404	NaN	1	0	Median	114320000	68219000	46099000	44462000	22493000	21969000	0	0	0	0	0	0	69856000	45726000	24130000	37302	723	35126	228880;228881;228882	308086;308087	308087			2	
MQVDQEEPHVEEQQQQTPAENK	1	Unmodified	2621.1664	0.166373	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	4.33	11					2				2	4	4	3	33.878	32.028	2;3;4	2.3082E-120	28646	160511_QHF_FH_JSI11i_1	307.22	296.43			0.93736	0.93251	25.441	12	3	Median	0.96674	0.79092	2.3636	2	0	Median	0.82273	0.96665	22.483	4	2	Median	0.94988	0.92377	1.9765	3	0	Median	1.0398	1.1054	41.221	3	1	Median	5351500000	2716800000	2634700000	1034300000	521210000	513050000	1568400000	829620000	738830000	1533300000	743430000	789870000	1215500000	622510000	592990000	37303	1417	35127	228883;228884;228885;228886;228887;228888;228889;228890;228891;228892;228893;228894;228895	308088;308089;308090;308091;308092;308093;308094;308095;308096;308097;308098;308099;308100;308101;308102;308103;308104;308105;308106;308107;308108;308109;308110;308111;308112	308090			25	
MQVDQEEPHVEEQQQQTPAENK	1	Oxidation (M)	2637.1613	0.16128762	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									1	4	2	3	27.654	27.155	3	2.7413E-14	28783	160511_QHF_FH_JSI12i_1	119.87	112.68			0.86131	0.87923	27.184	7	4	Median	1.2402	1.0238	NaN	1	0	Median	0.6892	0.79185	55.152	2	1	Median	0.86131	0.83406	NaN	1	1	Median	0.83492	0.87923	21.373	3	2	Median	611190000	336310000	274880000	155100000	78337000	76766000	149650000	106650000	42995000	18716000	9728300	8987700	287720000	141590000	146130000	37304	1417	35127	228896;228897;228898;228899;228900;228901;228902;228903;228904;228905	308113;308114;308115;308116;308117;308118;308119;308120;308121;308122;308123;308124;308125	308119		1075	12	
MQVDQEEPHVEEQQQQTPAENKAESEEMETSQAGSK	2	Unmodified	4085.7702	0.77022552	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.393	40.748	4	4.0034E-55	36925	160511_QHF_FH_JSI12i_1	165.55	164.11			1.0664	0.97569	14.151	4	1	Median	1.1798	0.96366	NaN	1	1	Median	0.72552	0.84698	NaN	1	0	Median	1.0192	0.98787	NaN	1	0	Median	1.1158	1.1937	NaN	1	0	Median	673570000	295230000	378340000	67794000	18802000	48993000	196010000	88737000	107280000	147030000	64610000	82424000	262720000	123080000	139640000	37305	1417	35128	228906;228907;228908;228909	308126;308127;308128;308129;308130;308131;308132;308133;308134;308135;308136	308131			11	
MQVGGDGVK	1	Unmodified	889.43275	0.43275186	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.15	15.706	2	0.0045667	13323	160511_QHF_FH_JSI12i_1	66.692	9.411			0.8774	0.91127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8774	0.91127	NaN	1	1	Median	546860000	317820000	229040000	0	0	0	0	0	0	0	0	0	546860000	317820000	229040000	37306	2286	35129	228910	308137	308137			1	
MQYAPNTQVEILPQGHESPIFK	1	Unmodified	2526.2577	0.25769461	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	76.605	75.909	3	1.5967E-46	66650	160511_QHF_FH_JSI11i_2	200.1	186.51			1.0381	0.9812	16.594	10	2	Median	1.1282	0.94204	1.9961	2	0	Median	0.81867	0.98479	17.624	3	2	Median	0.95341	0.97762	17.26	3	0	Median	1.1946	1.2614	18.818	2	0	Median	3808000000	1891800000	1916300000	561000000	287250000	273750000	810720000	450390000	360340000	1360300000	628140000	732170000	1076000000	525990000	550000000	37307	1490	35130	228911;228912;228913;228914;228915;228916;228917;228918;228919;228920	308138;308139;308140;308141;308142;308143;308144;308145;308146;308147;308148;308149;308150;308151;308152;308153;308154	308149			17	
MQYAPNTQVEILPQGHESPIFK	1	Oxidation (M)	2542.2526	0.25260923	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		3										1	2	72.037	70.974	3	1.2358E-05	62160	160511_QHF_FH_JSI11i_2	66.889	58.897			0.99953	1.0784	12.477	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84814	0.84026	NaN	1	1	Median	0.93163	1.0138	8.7418	2	2	Median	126090000	63150000	62937000	0	0	0	0	0	0	44555000	21437000	23117000	81532000	41713000	39819000	37308	1490	35130	228921;228922;228923	308155;308156;308157	308157		1172	3	
MQYGLFLK	1	Unmodified	998.52592	0.52592396	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.11	66.207	2	0.0045282	57679	160511_QHF_FH_JSI11i_2	68.422	44.449			0.85723	0.95579	16.463	4	2	Median	1.2883	1.1281	NaN	1	0	Median	0.76259	0.93863	NaN	1	1	Median	0.96362	0.97327	NaN	1	0	Median	0.66084	0.75711	NaN	1	1	Median	196780000	106830000	89947000	33413000	16412000	17002000	46165000	23991000	22174000	69934000	37866000	32068000	47268000	28565000	18703000	37309	1670	35131	228924;228925;228926;228927	308158;308159;308160;308161;308162	308161			5	
MQYSMEYFQFMK	1	Unmodified	1631.6822	0.68224296	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	2	2	2	1	86.881	83.161	2	1.8682E-39	43384	160513_QHF_FH_JSI10Kac_6	194.5	177.56			0.96082	1.0001	9.6864	7	1	Median	1.1371	0.99037	8.1988	2	1	Median	0.85849	1.0267	15.988	2	0	Median	1.0396	1.0122	15.039	2	0	Median	0.92408	1.0001	NaN	1	0	Median	420510000	213560000	206950000	85747000	38864000	46882000	156950000	85330000	71618000	134690000	71944000	62749000	43124000	17424000	25700000	37310	3921	35132	228928;228929;228930;228931;228932;228933;228934	308163;308164;308165;308166;308167;308168;308169;308170;308171;308172;308173;308174;308175	308174			13	
MRAEDGENYDIK	1	Unmodified	1439.6351	0.63509307	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	3.41		8	4					1		2	2	5	4	23.249	21.88	2;3	1.3593E-05	18133	160511_QHF_FH_JSI11i_2	90.731	84.698			1.0105	0.99404	17.91	12	0	Median	1.0923	0.94983	0.22347	2	0	Median	0.96072	1.1785	2.9071	2	0	Median	0.97053	0.98592	14.304	4	0	Median	0.86705	0.9254	27.331	4	0	Median	3125500000	1510900000	1614600000	473750000	210440000	263310000	845890000	340510000	505380000	1009700000	531430000	478240000	796240000	428570000	367670000	37311	505	35133	228935;228936;228937;228938;228939;228940;228941;228942;228943;228944;228945;228946;228947	308176;308177;308178;308179;308180;308181;308182;308183;308184;308185;308186;308187;308188;308189;308190;308191;308192;308193;308194;308195;308196;308197	308188			22	
MRAEDGENYDIKK	2	Unmodified	1567.7301	0.73005609	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	3	1	18.047	17.656	2;3;4	6.1144E-07	14478	160511_QHF_FH_JSI11i_3	134.61	117.03			0.95217	0.86379	54.065	7	3	Median	0.99606	0.86379	NaN	1	0	Median	1.0386	1.2486	16.042	2	1	Median	0.81289	0.77178	71.031	3	1	Median	0.46209	0.46042	NaN	1	1	Median	659320000	325090000	334230000	78801000	33272000	45529000	127690000	63814000	63875000	422900000	206620000	216270000	29937000	21386000	8551200	37312	505	35134	228948;228949;228950;228951;228952;228953;228954	308198;308199;308200;308201;308202;308203;308204;308205;308206;308207	308198			10	
MRAEDGENYDIKK	2	Acetyl (K)	1609.7406	0.74062078	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	1	0	0	2			By MS/MS	By MS/MS	14.5	0.5							1	1				1	1	37.784	27.832	3	0.014473	16148	160513_QHF_FH_JSI11Kac_5	58.487	53.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6227900	6227900	0	0	0	0	0	0	0	6227900	6227900	0	0	0	0	37313	505	35134	228955;228956	308208;308209	308209	252		2	
MRDILNMEK	1	Unmodified	1148.5682	0.56819948	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.73	0.445		3	8							4	3	3	1	40.369	39.435	2;3	4.1441E-07	34389	160511_QHF_FH_JSI11i_3	137.46	107.65			0.75211	0.81075	37.966	11	3	Median	0.97007	0.78498	39.519	4	2	Median	0.65549	0.81075	22.666	3	1	Median	0.80738	0.76763	9.2265	3	0	Median	2.053	2.0435	NaN	1	0	Median	5641500000	2640700000	3000800000	1816100000	819840000	996280000	1766900000	997860000	769020000	1997900000	800210000	1197700000	60638000	22823000	37815000	37314	1372	35135	228957;228958;228959;228960;228961;228962;228963;228964;228965;228966;228967	308210;308211;308212;308213;308214;308215;308216;308217;308218;308219;308220;308221;308222;308223;308224;308225;308226	308213			16	
MREAETEPHEGK	1	Unmodified	1412.6354	0.63542742	1513	P41223	BUD31	Protein BUD31 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.9972	5.9972	2	0.0047741	3768	160511_QHF_FH_JSI11i_3	91.937	68.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13786000	13786000	0	0	0	0	0	0	0	13786000	13786000	0	0	0	0	37315	1513	35136	228968	308227	308227			1	
MREANFTVSSMHGDMPQK	1	Unmodified	2064.9179	0.91794999	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			42.629	41.078	3;4	0.00052616	33624	160511_QHF_FH_JSI9i_3	62.94	52.473			0.93661	1.0316	22.606	3	1	Median	1.1787	0.98067	31.702	2	1	Median	0.91855	1.0316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236360000	101000000	135360000	134380000	48547000	85836000	101980000	52456000	49525000	0	0	0	0	0	0	37316	1481	35137	228969;228970;228971	308228;308229	308229			2	
MREDYDSVEQDGDEPGPQR	0	Unmodified	2221.9182	0.9182038	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.48	4.89	10	8	2						3	3	7	7	6	31.557	29.602	2;3	1.6144E-42	26626	160511_QHF_FH_JSI10i_1	165.74	160.76			1.0825	1.0621	12.677	18	3	Median	1.4092	1.1747	2.0151	2	1	Median	0.93868	1.0935	15.444	6	2	Median	1.111	1.0621	12.377	6	0	Median	0.9507	1.1177	8.8424	4	0	Linear	1600600000	805820000	794770000	198570000	85510000	113060000	544600000	298520000	246080000	481790000	228020000	253770000	375630000	193780000	181850000	37317	5678	35138	228972;228973;228974;228975;228976;228977;228978;228979;228980;228981;228982;228983;228984;228985;228986;228987;228988;228989;228990;228991;228992;228993;228994	308230;308231;308232;308233;308234;308235;308236;308237;308238;308239;308240;308241;308242;308243;308244;308245;308246;308247;308248;308249;308250;308251;308252;308253;308254;308255;308256;308257;308258;308259;308260;308261;308262;308263;308264;308265;308266;308267;308268;308269;308270;308271	308247			42	
MREEFDK	1	Unmodified	953.42767	0.42766648	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	11.088	11.133	2;3	0.01125	8715	160511_QHF_FH_JSI11i_3	118.32	105.5			0.94761	0.93441	19.823	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1662	1.1031	1.3934	2	0	Median	0.76891	0.78366	2.8046	2	0	Median	1535700000	632860000	902880000	0	0	0	0	0	0	874710000	328840000	545870000	661030000	304020000	357010000	37318	379	35139	228995;228996;228997;228998	308272;308273;308274;308275	308273			4	
MREEFDKIGMR	1	Acetyl (K)	1452.6854	0.6853545	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		56.698	46.972	3	0.016411	25422	160513_QHF_FH_JSI11Kac_6	48.568	19.227			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37319	379	35140	228999	308276	308276	198		1	
MREELGELSEQFYK	1	Unmodified	1757.8294	0.82943578	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		62.648	62.648	3	0.0013099	55726	160511_QHF_FH_JSI11i_3	56.599	44.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37320	3355	35141	229000	308277	308277			1	
MREEVITLIR	0	Unmodified	1258.7067	0.70674187	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	4	1		53.952	52.553	2;3	6.4577E-07	43947	160511_QHF_FH_JSI10i_3	113.27	78.578			1.4719	1.5167	20.347	7	2	Median	1.8362	1.509	25.531	3	0	Median	1.4122	1.5857	18.376	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1687700000	744190000	943530000	558250000	218940000	339300000	1129500000	525250000	604230000	0	0	0	0	0	0	37321	1600	35142	229001;229002;229003;229004;229005;229006;229007;229008	308278;308279;308280;308281;308282;308283;308284;308285;308286;308287;308288	308282			11	
MREGLNVSK	1	Unmodified	1032.5386	0.53861391	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				15.452	14.398	3	0.0010289	11390	160511_QHF_FH_JSI9i_3	67.726	44.297			1.4196	1.1686	NaN	1	0	Median	1.4196	1.1686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42233000	18115000	24118000	42233000	18115000	24118000	0	0	0	0	0	0	0	0	0	37322	1841	35143	229009	308289;308290	308289			2	
MREIVHLQAGQCGNQIGAK	1	Unmodified	2109.0572	0.057161084	2075;811	P68371;P04350	TUBB4B;TUBB4A	Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	10.6	6.41			5						7	4	5	1	2	45.097	38.674	3;4	3.4914E-10	21146	160513_QHF_FH_JSI10Kac_6	117.26	0			1.2862	1.2806	38.845	11	4	Median	1.4163	1.1559	22.01	4	1	Median	0.68217	0.80427	42.043	4	2	Median	1.3863	1.3891	NaN	1	0	Median	1.5945	1.7123	28.403	2	1	Median	216930000	107930000	109000000	86952000	33211000	53740000	114850000	69147000	45698000	4364500	2237900	2126600	10772000	3335900	7436200	37323	2075;811	35144	229010;229011;229012;229013;229014;229015;229016;229017;229018;229019;229020;229021	308291;308292;308293;308294;308295;308296;308297;308298;308299;308300;308301;308302;308303;308304;308305	308305			15	
MREVCDEVK	1	Unmodified	1164.5267	0.5267286	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	13.875	13.911	3	0.01215	11234	160511_QHF_FH_JSI11i_3	46.844	41.95			0.64511	0.6359	32.685	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83077	0.80124	NaN	1	1	Median	0.50095	0.50468	NaN	1	1	Median	257060000	123110000	133960000	0	0	0	0	0	0	175220000	68016000	107200000	81847000	55091000	26756000	37324	1415	35145	229022;229023	308306;308307	308306			2	
MREWGAEALTSLIK	1	Unmodified	1603.8392	0.83921261	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				85.961	84.737	3	0.0077181	69559	160511_QHF_FH_JSI9i_3	43.813	33.761			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37325	3262	35146	229024	308308	308308			1	
MRFDEIFLK	1	Unmodified	1197.6216	0.62161526	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	77.017	76.253	3	2.1614E-05	66211	160511_QHF_FH_JSI12i_3	88.681	71.655			1.1295	1.0154	53.464	5	2	Median	2.7737	2.3985	NaN	1	1	Median	0.7868	0.91834	64.316	2	1	Median	1.1295	1.0154	NaN	1	0	Median	0.85281	0.8741	NaN	1	0	Median	136950000	63196000	73749000	5647000	1008500	4638500	30709000	17508000	13201000	34380000	15795000	18585000	66209000	28885000	37324000	37326	5230	35147	229025;229026;229027;229028;229029;229030	308309;308310;308311;308312;308313;308314;308315;308316;308317;308318;308319;308320;308321	308321			13	
MRGQAFVIFK	1	Unmodified	1195.6536	0.65358409	906;920	P08579;P09012	SNRPB2;SNRPA	U2 small nuclear ribonucleoprotein B'';U1 small nuclear ribonucleoprotein A	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	62.492	53.241	3	0.0004007	28269	160513_QHF_FH_JSI9Kac_6	70.1	56.747			0.78696	1.0046	20.845	4	0	Linear	0.88536	0.76393	NaN	1	0	Median	0.77047	0.91058	NaN	1	0	Median	1.2521	1.2197	NaN	1	0	Median	0.99876	1.1083	NaN	1	0	Median	131470000	67293000	64180000	48983000	19334000	29650000	67259000	41765000	25495000	5243500	1746500	3497000	9987400	4448600	5538800	37327	906;920	35148	229031;229032;229033;229034	308322;308323;308324;308325	308322			3	
MRIESLSSQLSNLQK	1	Unmodified	1732.9142	0.91416847	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			65.805	64.308	3	1.0531E-06	53777	160511_QHF_FH_JSI10i_3	87.647	76.603			0.61787	0.54787	34.206	3	3	Plateau	0.87302	0.71645	47.805	2	2	Median	0.56547	0.65434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203240000	117780000	85456000	134010000	77586000	56423000	69228000	40196000	29032000	0	0	0	0	0	0	37328	1180	35149	229035;229036;229037;229038	308326;308327;308328;308329	308327			4	
MRLDDFWSLK	1	Unmodified	1309.6489	0.64889264	5392	Q9UL63	MKLN1	Muskelin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	83.306	83.115	3	0.0020873	72164	160511_QHF_FH_JSI12i_3	62.466	48.787			1.0804	1.161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0804	1.161	NaN	1	1	Median	19466000	9032200	10434000	0	0	0	0	0	0	0	0	0	19466000	9032200	10434000	37329	5392	35150	229039	308330	308330			1	
MRLEGQLEALSLEASQALK	1	Unmodified	2086.1092	0.10923946	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		99.587	99.587	3	0.0041568	88700	160511_QHF_FH_JSI11i_3	44.587	35.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37330	2269	35151	229040	308331	308331			1	
MRNGYELSPTAAANFTR	0	Unmodified	1897.9105	0.91048007	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			53.694	52.136	3	0.019186	43587	160511_QHF_FH_JSI10i_3	37.042	29.633			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37331	1673	35152	229041	308332	308332			1	
MRPEIAGLK	1	Unmodified	1013.5692	0.56918576	5374	Q9UKM7	MAN1B1	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.714	32.714	3	0.0064691	28484	160511_QHF_FH_JSI11i_3	50.452	31.348			0.54897	0.52554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54897	0.52554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55518000	29383000	26135000	0	0	0	0	0	0	55518000	29383000	26135000	0	0	0	37332	5374	35153	229042	308333	308333			1	
MRPLTEEETR	0	Unmodified	1260.6132	0.61323542	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		17.121	16.358	3	2.2584E-06	13767	160511_QHF_FH_JSI10i_2	93.839	69.33			0.81015	0.81795	33.668	2	0	Median	0.76654	0.64466	NaN	1	0	Median	0.85625	1.0378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160470000	88062000	72410000	69983000	36003000	33980000	90490000	52059000	38430000	0	0	0	0	0	0	37333	5484	35154	229043;229044;229045;229046	308334;308335;308336	308336			3	
MRSEATDVK	1	Unmodified	1035.5019	0.50189405	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	1	4	1	6.7137	6.5098	2;3	0.00041641	4118	160511_QHF_FH_JSI11i_3	71.03	46.875			0.72763	0.8077	58.283	8	0	Median	0.81299	0.69652	40.437	2	0	Median	0.74691	0.91054	NaN	1	0	Median	0.92766	0.89998	84.67	4	0	Median	0.70884	0.71648	NaN	1	0	Median	924590000	437950000	486640000	173670000	82524000	91150000	115170000	68432000	46741000	550260000	237620000	312640000	85485000	49379000	36107000	37334	5161	35155	229047;229048;229049;229050;229051;229052;229053;229054	308337;308338;308339;308340;308341	308338			5	
MRVLQEK	1	Oxidation (M)	918.49569	0.49568646	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	10.028	10.075	3	0.023282	7660	160511_QHF_FH_JSI11i_3	51.787	32.001			1.9953	1.9742	68.651	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2459	1.215	NaN	1	1	Median	3.1955	3.2078	NaN	1	1	Median	1557900000	531950000	1026000000	0	0	0	0	0	0	561280000	196130000	365150000	996620000	335820000	660800000	37335	2637	35156	229055;229056	308342;308343	308342			2	
MRYEGVVDMFQTVK	1	Unmodified	1701.8218	0.82184798	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		74.492	73.777	3	4.7043E-05	65626	160511_QHF_FH_JSI11i_3	90.367	79.096			0.98455	1.0129	26.305	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75365	0.84098	NaN	1	0	Median	1.2862	1.22	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77892000	43009000	34883000	0	0	0	21097000	11623000	9474500	56794000	31386000	25408000	0	0	0	37336	971	35157	229057;229058	308344;308345;308346	308345			3	
MSAAEAVK	1	Unmodified	805.40039	0.4003891	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	13.603	13.277	2	0.013047	10671	160511_QHF_FH_JSI10i_1	52.683	6.3321			1.4441	1.5375	77.002	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8153	0.89196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5578	2.6502	NaN	1	1	Median	15351000000	8501900000	6849100000	0	0	0	8728400000	5245400000	3482900000	0	0	0	6622600000	3256400000	3366200000	37337	1085	35158	229059;229060	308347;308348	308348			2	
MSAAQALK	1	Unmodified	818.43202	0.43202358	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	19.704	18.991	2	0.012937	15353	160511_QHF_FH_JSI11i_2	52.786	32.939			0.75934	0.81798	4.5292	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78767	0.7922	NaN	1	0	Median	0.73203	0.8446	NaN	1	0	Median	252930000	142880000	110050000	0	0	0	0	0	0	117610000	68701000	48906000	135320000	74178000	61146000	37338	2636	35159	229061;229062	308349	308349			1	
MSAAQALKK	2	Unmodified	946.52699	0.52698659	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			16.498	15.431	3	0.0009871	12219	160511_QHF_FH_JSI9i_3	66.692	54.104			1.3225	1.0541	230.13	3	2	Median	5.6761	4.52	205.88	2	1	Median	0.17938	0.20627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195890000	92709000	103180000	144960000	46548000	98416000	50929000	46161000	4767900	0	0	0	0	0	0	37339	2636	35160	229063;229064;229065	308350;308351;308352	308352			3	
MSAEDIEK	1	Unmodified	921.41135	0.41134771	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	23.346	22.946	2	0.014211	20123	160511_QHF_FH_JSI12i_1	60.91	32.398			0.45211	0.50304	43.068	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31721	0.37098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64438	0.68213	NaN	1	1	Median	449480000	270630000	178850000	0	0	0	156660000	119860000	36805000	0	0	0	292810000	150770000	142050000	37340	5395	35161	229066;229067	308353;308354	308353			2	
MSAEINEIIR	0	Unmodified	1174.6016	0.6016081	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	2	4								2	2	2		57.775	57.135	2	0.00040496	49527	160511_QHF_FH_JSI11i_2	89.247	68.918			0.84968	0.86315	16.454	5	3	Median	0.99583	0.86315	NaN	1	1	Median	0.72258	0.86684	20.534	2	1	Median	0.93467	0.92909	24.518	2	1	Median	NaN	NaN	NaN	0	0	Median	1067200000	571730000	495450000	269710000	134480000	135230000	379170000	216220000	162950000	418290000	221020000	197270000	0	0	0	37341	1139	35162	229068;229069;229070;229071;229072;229073	308355;308356;308357;308358;308359	308358			5	
MSASDPNSSIFLTDTAK	1	Unmodified	1783.8298	0.82982971	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	3	2	1	63.031	61.3	2;3	1.7982E-15	55736	160511_QHF_FH_JSI11i_1	185.95	178.08			1.1136	1.0822	17.153	8	2	Median	1.291	1.0629	3.298	2	0	Median	0.9252	1.1176	20.889	3	1	Median	1.2737	1.2481	29.673	2	1	Median	1.0136	1.0764	NaN	1	0	Median	3124700000	1467300000	1657400000	821930000	364070000	457860000	743910000	397080000	346830000	920660000	422440000	498220000	638230000	283740000	354480000	37342	1226	35163	229074;229075;229076;229077;229078;229079;229080;229081	308360;308361;308362;308363;308364;308365;308366;308367;308368;308369;308370;308371;308372;308373;308374	308362			15	
MSASILLSK	1	Unmodified	948.5314	0.53140327	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	5.79		1	2						1			2	2	55.876	53.048	2	0.0089416	45435	160511_QHF_FH_JSI12i_3	60.717	37.288			1.5687	1.5998	52.2	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6961	1.6091	51.959	2	1	Median	1.27	1.3771	72.335	2	1	Median	190480000	82806000	107680000	0	0	0	0	0	0	74313000	23998000	50315000	116170000	58808000	57363000	37343	4704	35164	229082;229083;229084;229085	308375;308376;308377;308378	308378			4	
MSATFIGNSTAIQELFK	1	Unmodified	1856.9342	0.93423521	2075;2477	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.64	4	5	6						8	6	7	4	6	97.401	94.173	2;3	3.5849E-190	46115	160513_QHF_FH_JSI9Kac_6	313.32	53.625			0.98598	0.98412	14.124	21	3	Median	1.1247	0.94003	5.2955	4	1	Median	0.87811	1.0493	16.501	7	2	Median	0.9314	0.92902	3.8463	4	0	Median	1.0396	1.0715	18.2	6	0	Median	13354000000	6837700000	6516000000	1407800000	633460000	774310000	3614200000	2046700000	1567500000	3372300000	1673500000	1698800000	4959400000	2484000000	2475400000	37344	2075;2477	35165	229086;229087;229088;229089;229090;229091;229092;229093;229094;229095;229096;229097;229098;229099;229100;229101;229102;229103;229104;229105;229106;229107;229108	308379;308380;308381;308382;308383;308384;308385;308386;308387;308388;308389;308390;308391;308392;308393;308394;308395;308396;308397;308398;308399;308400;308401;308402;308403;308404	308394			26	
MSATFIGNSTAIQELFK	1	Oxidation (M)	1872.9291	0.92914983	2075;2477	P68371;Q13885;Q9BVA1	TUBB4B;TUBB2A;TUBB2B	Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	2	1	3	2	94.468	91.766	2	1.0323E-54	44170	160513_QHF_FH_JSI11Kac_6	242.07	40.586			0.96676	0.91197	21.942	7	3	Median	1.0041	0.87585	5.7137	2	1	Median	0.70345	0.85734	NaN	1	0	Median	1.1286	1.1243	36.549	2	2	Median	1.0215	1.0827	23.068	2	0	Median	250700000	130510000	120190000	67989000	36453000	31536000	35569000	21508000	14061000	69805000	30200000	39606000	77336000	42353000	34983000	37345	2075;2477	35165	229109;229110;229111;229112;229113;229114;229115;229116	308405;308406;308407;308408;308409;308410;308411;308412;308413;308414;308415	308407		1743	11	
MSAVSQDAIEDSR	0	Unmodified	1407.63	0.63000769	5204	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.98	31.715	2	0.004257	27746	160511_QHF_FH_JSI9i_1	62.924	53.491			0.99457	0.84548	NaN	1	1	Median	0.99457	0.84548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29049000	12537000	16512000	29049000	12537000	16512000	0	0	0	0	0	0	0	0	0	37346	5204	35166	229117	308416	308416			1	
MSAYAFFVQTCR	0	Unmodified	1479.6639	0.66389078	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	78.844	70.706	2;3	9.9202E-40	37052	160513_QHF_FH_JSI12Kac_6	198.62	182.53			0.8999	0.94131	28.934	6	1	Median	1.1137	0.96573	NaN	1	0	Median	0.81463	0.95663	5.9038	2	0	Median	0.71062	0.67132	40.526	2	1	Median	1.1253	1.1713	NaN	1	0	Median	726780000	406580000	320200000	84344000	44020000	40323000	282910000	171630000	111280000	246930000	142840000	104090000	112600000	48093000	64506000	37347	278	35167	229118;229119;229120;229121;229122;229123	308417;308418;308419;308420;308421;308422;308423;308424;308425	308422			9	
MSAYAFFVQTCREEHK	1	Unmodified	2002.903	0.90295185	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	69.139	60.189	4	0.0001151	32879	160513_QHF_FH_JSI10Kac_6	76.85	67.918			1.1913	1.2003	29.207	4	0	Median	1.1767	0.96622	NaN	1	0	Median	1.0302	1.2111	NaN	1	0	Median	1.2061	1.1896	NaN	1	0	Median	1.835	1.9294	NaN	1	0	Median	150290000	67298000	82988000	15211000	7498500	7712100	103210000	48271000	54940000	13375000	5146300	8228800	18489000	6382000	12107000	37348	278	35168	229124;229125;229126;229127	308426	308426			1	
MSAYSGITDVIIGMPHR	0	Unmodified	1846.907	0.9069746	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.2	5.42		2	2						1	3	2			83.584	80.643	3	2.3974E-06	73946	160511_QHF_FH_JSI10i_2	105.19	93.275			1.7728	1.7778	57.15	4	3	Median	3.1011	2.6427	75.201	2	1	Median	1.3118	1.5637	37.276	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126160000	51381000	74776000	35402000	15796000	19607000	90754000	35586000	55169000	0	0	0	0	0	0	37349	4117	35169	229128;229129;229130;229131;229132	308427;308428;308429;308430;308431	308430			5	
MSCMDNK	1	Unmodified	884.31904	0.31904401	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.7249	7.3728	2	0.030864	5302	160511_QHF_FH_JSI12i_1	53.754	43.34			3.1933	3.3254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1933	3.3254	NaN	1	1	Median	166750000	44368000	122380000	0	0	0	0	0	0	0	0	0	166750000	44368000	122380000	37350	1192	35170	229133	308432	308432			1	
MSDDIRK	1	Acetyl (Protein N-term)	905.42767	0.42766648	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	1	0	1		By matching	By MS/MS	By MS/MS	5.33	6.13	2						1				1	1	1	13.113	12.929	2;3	0.029018	10417	160511_QHF_FH_JSI11i_1	33.516	8.0654			0.98047	1.0593	33.491	2	0	Median	NaN	NaN	NaN	0	0	Median	1.116	1.3423	NaN	1	0	Median	0.8614	0.8359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154800000	75416000	79385000	0	0	0	78940000	39613000	39327000	75861000	35803000	40058000	0	0	0	37351	2993	35171	229134;229135;229136	308433;308434	308433			2	
MSDGKKEELQK	3	Unmodified	1291.6442	0.6442012	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	6.7923	6.89	2	0.0024545	4445	160511_QHF_FH_JSI12i_3	97.456	60.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17761000	17761000	0	0	0	0	0	0	0	0	0	0	17761000	17761000	0	37352	1332	35172	229137	308435	308435			1	
MSDGLFLQK	1	Unmodified	1037.5216	0.52156686	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	4	1	52.964	52.218	2	0.00019523	44701	160511_QHF_FH_JSI12i_2	85.38	70.443			0.80172	0.7634	52.345	7	6	Median	0.80172	0.67979	NaN	1	1	Median	0.49709	0.5922	6.0745	2	2	Median	1.4622	1.4883	55.683	3	3	Median	1.0274	1.1764	NaN	1	0	Median	1618900000	833110000	785750000	243920000	112360000	131560000	349030000	213740000	135290000	713410000	340230000	373180000	312500000	166790000	145720000	37353	1698	35173	229138;229139;229140;229141;229142;229143;229144;229145	308436;308437;308438;308439;308440;308441;308442;308443;308444	308439			9	
MSDGLFLQK	1	Oxidation (M)	1053.5165	0.51648149	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	12.3	0.471					2	1					1	1	1	72.402	63.781	2	0.048767	32002	160513_QHF_FH_JSI12Kac_3	34.824	12.693			0.83601	0.96897	9.7388	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76259	0.91411	NaN	1	0	Median	0.83601	0.80122	NaN	1	0	Median	0.89818	0.96897	NaN	1	0	Median	191740000	100930000	90807000	0	0	0	44490000	23639000	20851000	15675000	8657800	7017300	131570000	68636000	62939000	37354	1698	35173	229146;229147;229148	308445	308445			1	
MSDLTPVHFTPLDSSVDR	0	Unmodified	2015.9622	0.96224087	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	74.279	73.397	2;3	4.2067E-24	63414	160511_QHF_FH_JSI12i_2	161.19	151.13			1.3214	1.3654	13.368	6	1	Median	1.9423	1.6634	NaN	1	0	Median	1.3306	1.6236	NaN	1	0	Median	1.3484	1.3632	1.6473	2	0	Median	1.0977	1.2527	10.774	2	1	Median	617180000	275610000	341570000	96585000	37794000	58791000	125710000	46578000	79130000	252310000	117340000	134970000	142580000	73902000	68677000	37355	5554	35174	229149;229150;229151;229152;229153;229154;229155;229156	308446;308447;308448;308449;308450;308451;308452;308453;308454	308447			7	
MSEHYWTPQSNVSNETSTGK	1	Unmodified	2281.991	0.99097482	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	40.402	39.85	3	1.1388E-11	34979	160511_QHF_FH_JSI11i_3	135.18	133.64			1.0382	1.1163	11.206	4	0	Linear	1.0896	0.91633	NaN	1	0	Median	0.7992	0.97076	NaN	1	0	Median	1.284	1.1885	NaN	1	0	Median	0.98916	0.99683	NaN	1	0	Median	233400000	98163000	135240000	23152000	7632500	15519000	43416000	23626000	19790000	86191000	33909000	52283000	80645000	32996000	47649000	37356	5468	35175	229157;229158;229159;229160	308455;308456;308457;308458;308459;308460;308461;308462	308456			8	
MSELSSSRPK	1	Unmodified	1120.5547	0.55465791	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		10.38	10.38	2;3	0.0017959	8017	160511_QHF_FH_JSI11i_3	79.974	35.527			1.1802	1.0987	6.4007	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1802	1.0987	6.4007	2	0	Median	NaN	NaN	NaN	0	0	Median	340980000	129380000	211600000	0	0	0	0	0	0	340980000	129380000	211600000	0	0	0	37357	2540	35176	229161;229162	308463;308464;308465	308465			3	
MSEPLQSVVDHMATHLGVSPSR	0	Unmodified	2377.1518	0.15184933	3617	Q8NCF5	NFATC2IP	NFATC2-interacting protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		85.903	85.903	4	7.9239E-06	76696	160511_QHF_FH_JSI11i_3	68.369	59.768			0.93522	0.87521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93522	0.87521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28983000	13628000	15355000	0	0	0	0	0	0	28983000	13628000	15355000	0	0	0	37358	3617	35177	229163	308466	308466			1	
MSEQQDLER	0	Unmodified	1134.4975	0.49753696	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	14.884	14.16	2	0.00038188	11707	160511_QHF_FH_JSI10i_1	85.807	62.014			1.1801	1.0884	29.325	2	0	Median	1.6391	1.3392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8496	0.88456	NaN	1	0	Median	261000000	104880000	156120000	124770000	41590000	83179000	0	0	0	0	0	0	136230000	63291000	72939000	37359	2997	35178	229164;229165;229166;229167	308467;308468;308469	308468			3	
MSFCVYSILGVVK	1	Unmodified	1501.7673	0.76729322	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	94.019	85.834	2	4.9052E-14	50172	160513_QHF_FH_JSI10Kac_6	175.15	137.81			0.59871	0.6015	32.651	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.8446	0.98489	NaN	1	1	Median	0.58762	0.57345	NaN	1	0	Median	0.94873	1.0318	NaN	1	0	Median	264950000	134690000	130260000	0	0	0	117160000	69871000	47293000	87336000	49493000	37843000	60450000	15328000	45122000	37360	4831	35179	229168;229169;229170	308470;308471	308471			2	
MSFIVFSTR	0	Oxidation (M)	1102.5481	0.54811597	4757	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	15.3	0.471								2	1	1	1		1	73.342	63.143	2	0.0067594	33033	160513_QHF_FH_JSI12Kac_6	59.931	44.084			1.399	1.5079	44.317	3	0	Plateau	1.0588	0.89295	NaN	1	0	Median	0.54314	0.62477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.399	1.5079	NaN	1	0	Median	21116000	9526300	11590000	3624700	1493400	2131300	1916600	1210300	706240	0	0	0	15575000	6822600	8752400	37361	4757	35180	229171;229172;229173	308472;308473;308474;308475;308476	308476		2525	5	
MSFIVFSTR	0	Unmodified	1086.5532	0.55320134	4757	Q9H6X2	ANTXR1	Anthrax toxin receptor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	80.507	72.966	2	1.2455E-05	38058	160513_QHF_FH_JSI12Kac_6	119.21	102.11			0.84229	0.95261	72.963	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3443	1.5958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52773	0.56866	NaN	1	1	Median	907940000	350160000	557770000	0	0	0	763330000	252120000	511210000	0	0	0	144600000	98042000	46561000	37362	4757	35180	229174;229175	308477;308478	308477			2	
MSFLFSAFK	1	Unmodified	1076.5365	0.53648865	3771	Q8WUX9	CHMP7	Charged multivesicular body protein 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	92.655	92.632	2	0.0012499	80320	160511_QHF_FH_JSI12i_3	78.334	54.18			0.16246	0.16843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16246	0.16843	NaN	1	1	Median	14645000	10805000	3840100	0	0	0	0	0	0	0	0	0	14645000	10805000	3840100	37363	3771	35181	229176	308479	308479			1	
MSFQNLLAK	1	Unmodified	1050.5532	0.55320134	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	70.891	70.106	2	2.3197E-11	60727	160511_QHF_FH_JSI12i_3	161.02	138.89			0.80874	0.89477	34.595	8	4	Median	0.77886	0.64657	49.413	2	2	Median	0.75958	0.91922	40.582	3	2	Median	0.76755	0.74046	23.301	2	0	Median	1.1046	1.1283	NaN	1	0	Median	727760000	411110000	316650000	81363000	45913000	35450000	193210000	121360000	71856000	201200000	123640000	77556000	251980000	120190000	131790000	37364	179	35182	229177;229178;229179;229180;229181;229182;229183;229184	308480;308481;308482;308483;308484;308485;308486;308487	308487			8	
MSFVKGWGAEYR	1	Acetyl (K)	1471.6918	0.69182009	2709;2124	Q15796;P84022	SMAD2;SMAD3	Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	77.289	68.953	2	2.0166E-08	37379	160513_QHF_FH_JSI11Kac_6	117.09	94.351			0.81275	0.87704	4.8221	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74553	0.88093	NaN	1	0	Median	0.82213	0.80862	NaN	1	0	Median	0.81275	0.87704	NaN	1	0	Median	113100000	69582000	43522000	0	0	0	62623000	43296000	19328000	25648000	11652000	13996000	24833000	14635000	10199000	37365	2709;2124	35183	229185;229186;229187	308488;308489;308490;308491;308492;308493	308489	2224		6	
MSFYNELYK	1	Unmodified	1193.5427	0.54269624	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	62.953	61.646	2	0.014305	52858	160511_QHF_FH_JSI12i_2	55.567	35.78			0.7594	0.8146	32.892	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7594	0.8146	32.892	2	2	Median	66463000	36912000	29551000	0	0	0	0	0	0	0	0	0	66463000	36912000	29551000	37366	2925	35184	229188;229189	308494;308495	308494			2	
MSGDNSSQLTK	1	Unmodified	1166.5238	0.52375171	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	12.066	11.59	2	0.00049822	9494	160511_QHF_FH_JSI12i_1	86.014	68.195			1.2173	1.3269	28.441	6	4	Median	1.3658	1.1163	31.52	2	2	Median	1.1419	1.3664	NaN	1	0	Median	1.2977	1.2886	NaN	1	0	Median	1.0892	1.1131	51.272	2	2	Median	690810000	322280000	368530000	192150000	69018000	123140000	129310000	67931000	61381000	102920000	55314000	47606000	266420000	130020000	136410000	37367	1360	35185	229190;229191;229192;229193;229194;229195	308496;308497;308498;308499;308500;308501	308498			6	
MSGEPIQTVESIRVPGK	1	Unmodified	1826.956	0.95603328	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			65.102	64.224	3	0.0094541	56945	160511_QHF_FH_JSI10i_2	46.543	36.204			1.4259	1.4575	90.494	2	1	Median	0.88853	0.7686	NaN	1	0	Median	2.2884	2.7638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95347000	38901000	56446000	30145000	18530000	11615000	65202000	20371000	44831000	0	0	0	0	0	0	37368	2984	35186	229196;229197	308502;308503	308503			2	
MSGGWELELNGTEAK	1	Unmodified	1620.7454	0.7453718	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	65.924	65.294	2	1.1664E-65	57085	160511_QHF_FH_JSI11i_2	234.92	219.29			0.99304	1.0163	19.638	10	2	Median	1.1714	0.97995	5.8562	2	0	Median	0.74329	0.89977	0.032036	2	0	Median	1.0289	1.0342	29.377	3	1	Median	0.93967	1.0388	20.746	3	1	Plateau	2786800000	1329300000	1457600000	409480000	173850000	235630000	782220000	418220000	364000000	646960000	287980000	358980000	948160000	449220000	498940000	37369	2251	35187	229198;229199;229200;229201;229202;229203;229204;229205;229206;229207;229208;229209	308504;308505;308506;308507;308508;308509;308510;308511;308512;308513;308514;308515;308516;308517;308518;308519;308520;308521;308522;308523;308524;308525;308526;308527;308528;308529;308530;308531;308532;308533;308534;308535;308536;308537;308538	308532			35	
MSGIYWGLTVMDLMGQLHR	0	Unmodified	2207.069	0.068971323	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	97.69	89.81	2;3	7.0484E-177	53436	160513_QHF_FH_JSI10Kac_6	289.89	256.21			0.92993	0.9915	13.8	5	0	Median	1.2832	1.0824	NaN	1	0	Median	0.88326	1.0436	7.2403	2	0	Median	0.92993	0.87275	NaN	1	0	Median	0.76555	0.79935	NaN	1	0	Median	6415100000	3118400000	3296600000	1085700000	448300000	637440000	3393400000	1662500000	1730800000	1142600000	542940000	599700000	793310000	464620000	328690000	37370	1803	35188	229210;229211;229212;229213;229214	308539;308540;308541;308542;308543;308544;308545;308546	308546			8	
MSGIYWGLTVMDLMGQLHR	0	Oxidation (M)	2223.0639	0.063885945	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	3	4	2	94.203	86.136	3	2.6458E-18	47750	160513_QHF_FH_JSI12Kac_6	134.37	121.71			1.0143	1.0696	37.001	9	3	Median	1.1368	0.97871	9.9072	2	0	Median	0.97052	1.1549	5.8159	3	1	Median	1.6393	1.5788	86.839	2	1	Median	0.93332	0.99325	16.892	2	1	Median	1112300000	534150000	578170000	125880000	55298000	70580000	565010000	272620000	292390000	147680000	61200000	86480000	273760000	145030000	128730000	37371	1803	35188	229215;229216;229217;229218;229219;229220;229221;229222;229223;229224;229225	308547;308548;308549;308550;308551;308552;308553;308554;308555;308556;308557;308558	308554		1485;1486;1487	11	
MSGIYWGLTVMDLMGQLHR	0	2 Oxidation (M)	2239.0588	0.058800567	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	2	0		By MS/MS			16	0									1		1			86.967	81.248	3	8.2583E-05	45744	160513_QHF_FH_JSI10Kac_6	71.073	62.254			1.341	1.6096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.341	1.6096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93787000	42763000	51024000	0	0	0	93787000	42763000	51024000	0	0	0	0	0	0	37372	1803	35188	229226	308559	308559		1485;1486;1487	1	
MSGKHDVGAYMLMYK	2	Acetyl (K)	1771.8096	0.80956874	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		72.477	64.017	3	0.0030537	34649	160513_QHF_FH_JSI11Kac_6	68.944	62.912			1.0369	1.1051	117.15	2	0	Median	NaN	NaN	NaN	0	0	Median	2.0938	2.5303	NaN	1	0	Median	0.51346	0.48266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85219000	48288000	36930000	0	0	0	21724000	8594600	13129000	63495000	39694000	23801000	0	0	0	37373	2094	35189	229227;229228	308560	308560	2186;2195		0	
MSGLHISGGQSVLEPIK	1	Unmodified	1751.924	0.92400487	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	63.359	63.006	3	3.53E-05	55807	160511_QHF_FH_JSI11i_3	75.682	64.738			0.98457	0.95661	40.775	4	3	Median	NaN	NaN	NaN	0	0	Median	0.49802	0.61866	NaN	1	1	Median	0.96882	0.9125	NaN	1	0	Median	1.2762	1.2927	35.9	2	2	Median	259290000	129480000	129810000	0	0	0	27952000	19773000	8179100	109690000	53535000	56159000	121640000	56172000	65468000	37374	2584	35190	229229;229230;229231;229232	308561;308562;308563;308564;308565	308561			5	
MSGLIVGSAFGPIK	1	Unmodified	1375.7534	0.75335771	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	9.5	6.5			2						2	1		2	1	82.82	78.287	2	0.00019033	71970	160511_QHF_FH_JSI12i_3	115.29	103.24			1.1357	1.0642	23.454	4	0	Median	1.1182	0.9622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96961	0.92083	34.724	2	0	Median	1.1534	1.1877	NaN	1	0	Median	179860000	86466000	93398000	33996000	13024000	20972000	0	0	0	95786000	50183000	45604000	50082000	23259000	26823000	37375	5376	35191	229233;229234;229235;229236	308566;308567;308568;308569	308568			4	
MSHLEDILGK	1	Unmodified	1141.5801	0.58014438	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.131	50.605	3	0.002323	43652	160511_QHF_FH_JSI11i_2	57.348	47.693			1.7432	1.7534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7432	1.7534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28499000	11342000	17158000	0	0	0	0	0	0	28499000	11342000	17158000	0	0	0	37376	620	35192	229237	308570	308570			1	
MSHVLWPYLLQFLTPVR	0	Unmodified	2099.139	0.13902344	3626	Q8NDA8	MROH1	Maestro heat-like repeat-containing protein family member 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.537	91.817	3	2.9618E-11	53458	160513_QHF_FH_JSI10Kac_6	99.663	90.379			0.73617	0.86398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73617	0.86398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241090000	142170000	98925000	0	0	0	241090000	142170000	98925000	0	0	0	0	0	0	37377	3626	35193	229238	308571	308571			1	
MSIFGHSMGGHGALICALK	1	Unmodified	1985.9638	0.96377797	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	76.227	69.48	4	9.6109E-45	35844	160513_QHF_FH_JSI12Kac_6	176.28	169.51			0.94848	1.0375	14.078	5	0	Median	1.303	1.1369	NaN	1	0	Median	0.87633	1.0375	NaN	1	0	Median	0.91319	0.87341	7.9597	2	0	Median	1.0768	1.1465	NaN	1	0	Median	670320000	328990000	341330000	76426000	35998000	40428000	389480000	188160000	201320000	163540000	85595000	77942000	40870000	19233000	21637000	37378	979	35194	229239;229240;229241;229242;229243	308572;308573;308574;308575;308576;308577;308578;308579;308580	308578			9	
MSIHLIHMR	0	Unmodified	1136.5947	0.594689	5490	Q9Y241;A8MV81	HIGD1A;HIGD1C	HIG1 domain family member 1A, mitochondrial;HIG1 domain family member 1C	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	53.5	44.023	3	0.0045338	22746	160513_QHF_FH_JSI12Kac_6	46.001	30.386			2.1798	2.0186	59.217	2	0	Median	1.5103	1.328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.146	3.0683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60872000	20804000	40068000	28962000	12338000	16624000	0	0	0	31909000	8465400	23444000	0	0	0	37379	5490	35195	229244;229245;229246	308581;308582;308583	308583			2	
MSIIPQEPVLFTGTMR	0	Unmodified	1818.9372	0.93721209	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	100.05	99.903	2;3	0.00062126	85896	160511_QHF_FH_JSI12i_2	65.395	50.193			0.85058	0.95372	48.841	5	0	Median	0.5191	0.45132	NaN	1	0	Median	0.55699	0.67325	NaN	1	0	Median	1.1475	1.1262	NaN	1	0	Median	1.1053	1.2414	37.281	2	0	Median	57238000	30979000	26260000	6126900	4024700	2102200	14891000	10336000	4555600	11549000	2491000	9057700	24672000	14128000	10544000	37380	292	35196	229247;229248;229249;229250;229251;229252	308584;308585;308586;308587;308588;308589;308590;308591	308587			7	
MSILAIINNMQQ	0	Unmodified	1374.6999	0.69994194	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.23	102.05	2	0.00752	82957	160511_QHF_FH_JSI9i_3	50.805	40.851			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37381	5277	35197	229253	308592	308592			1	
MSILGVR	0	Unmodified	774.44219	0.44219433	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	47.948	46.924	2	0.0091124	41151	160511_QHF_FH_JSI11i_3	80.555	27.034			0.97793	0.95243	7.648	6	0	Median	1.1676	0.97708	7.9595	2	0	Median	0.86784	1.0512	NaN	1	0	Median	0.97793	0.94359	5.6655	2	0	Median	0.776	0.86754	NaN	1	0	Median	463940000	235020000	228920000	124700000	58367000	66338000	85617000	42223000	43393000	207170000	108930000	98247000	46446000	25500000	20946000	37382	3896	35198	229254;229255;229256;229257;229258;229259	308593;308594;308595;308596	308593			4	
MSINAEEVVVGDLVEVK	1	Unmodified	1829.9445	0.94446554	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								3	3	3	3	99.461	99.318	2;3	1.4762E-06	87158	160511_QHF_FH_JSI11i_2	144.12	126.46			0.77849	0.83372	28.756	11	4	Median	1.4143	1.2196	38.827	2	1	Median	0.58377	0.67066	14.823	3	2	Plateau	0.85148	0.83372	7.4961	3	0	Median	0.70544	0.76218	39.332	3	1	Plateau	275560000	150770000	124790000	35130000	14986000	20144000	80158000	48135000	32023000	98904000	53482000	45422000	61370000	34163000	27206000	37383	821	35199	229260;229261;229262;229263;229264;229265;229266;229267;229268;229269;229270;229271	308597;308598;308599;308600;308601;308602;308603;308604;308605;308606;308607;308608;308609;308610;308611;308612;308613;308614;308615;308616;308617;308618	308613			22	
MSIYQAMWK	1	Unmodified	1156.5409	0.5409221	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	70.765	69.851	2	0.00013647	60505	160511_QHF_FH_JSI12i_3	108.09	95.461			1.1286	1.252	22.082	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2591	1.4191	NaN	1	0	Median	0.97177	0.96327	NaN	1	0	Median	1.2406	1.3102	24.137	2	1	Median	225370000	98868000	126510000	0	0	0	31338000	15704000	15634000	50483000	26681000	23802000	143550000	56483000	87069000	37384	1898	35200	229272;229273;229274;229275	308619;308620;308621	308621			2	
MSKHAQTFGAK	2	Acetyl (K)	1246.6128	0.61284149	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.061	15.958	3	0.010188	9932	160513_QHF_FH_JSI11Kac_6	50.207	41.253			2.6345	2.5755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6345	2.5755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6179300	2762500	3416800	0	0	0	0	0	0	6179300	2762500	3416800	0	0	0	37385	2677	35201	229276	308622	308622	2626;2627		1	
MSLAQKK	2	Unmodified	804.45276	0.45275902	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	1	2	2	8.2515	7.9996	2;3	0.021296	5792	160511_QHF_FH_JSI9i_3	38.792	23.352			3.5921	3.1508	114.54	5	5	Median	4.7073	3.9105	30.551	2	2	Median	0.50529	0.58054	NaN	1	1	Median	13.706	13.276	NaN	1	1	Median	2.1728	2.1711	NaN	1	1	Median	6847600000	1193900000	5653700000	3050400000	294820000	2755600000	941630000	544210000	397420000	1507100000	43829000	1463300000	1348500000	311060000	1037400000	37386	1590	35202	229277;229278;229279;229280;229281;229282;229283;229284	308623;308624;308625;308626;308627;308628;308629;308630	308627			8	
MSLAQKK	2	Oxidation (M)	820.44767	0.44767364	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	1	By MS/MS				3	0			2							2				6.5996	6.0541	3	0.023346	2139	160511_QHF_FH_JSI9i_3	38.792	23.352			3.0634	2.4546	110.2	2	1	Median	3.0634	2.4546	110.2	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	470550000	140820000	329730000	470550000	140820000	329730000	0	0	0	0	0	0	0	0	0	37387	1590	35202	229285;229286	308631;308632	308631			2	
MSLDPADLTHDTTGLTAK	1	Unmodified	1885.9091	0.90914267	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.442	4	11								4	3	4	4	73.616	72.875	2;3	4.4715E-11	64002	160511_QHF_FH_JSI11i_2	141.32	117.33			0.78124	0.77874	11.407	10	3	Median	0.87525	0.74437	4.4559	2	1	Median	0.70289	0.85706	10.427	2	0	Median	0.79925	0.7788	12.791	3	1	Median	0.74329	0.76999	15.397	3	1	Median	1266200000	667140000	599030000	219720000	113680000	106040000	385450000	206550000	178910000	386700000	198550000	188150000	274300000	148360000	125940000	37388	5428	35203	229287;229288;229289;229290;229291;229292;229293;229294;229295;229296;229297;229298;229299;229300;229301	308633;308634;308635;308636;308637;308638;308639;308640;308641;308642;308643;308644;308645;308646;308647;308648;308649;308650;308651;308652;308653;308654;308655	308651			23	
MSLEFPTGDSTQPNGGLSHTGTPK	1	Unmodified	2458.1435	0.14345271	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.216	61.305	3	7.7271E-09	53335	160511_QHF_FH_JSI11i_2	90.193	82.496			1.1709	1.1384	13.96	4	3	Median	1.1772	1.0181	NaN	1	0	Median	0.80771	0.98832	NaN	1	1	Median	1.273	1.2796	NaN	1	1	Median	1.1645	1.2729	NaN	1	1	Median	223790000	102240000	121550000	45319000	19768000	25551000	44467000	17576000	26891000	72363000	32102000	40261000	61639000	32796000	28843000	37389	4332	35204	229302;229303;229304;229305	308656;308657;308658;308659	308658			3	
MSLFYAEATPMLK	1	Unmodified	1500.7357	0.73565874	5015	Q9NUQ9;Q9H0Q0	FAM49B;FAM49A	Protein FAM49B;Protein FAM49A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.69	1	4	2						4	3	3	3	2	86.536	83.194	2	5.6641E-32	41423	160513_QHF_FH_JSI9Kac_6	184.36	167.73			0.84486	0.86662	26.249	11	5	Median	1.0033	0.85652	20.276	3	0	Median	0.79454	0.96332	32.487	3	2	Median	0.84486	0.86662	39.602	3	2	Median	0.82291	0.88446	5.5226	2	1	Median	1092700000	502880000	589860000	241350000	109110000	132240000	273300000	134310000	138990000	366710000	161610000	205110000	211380000	97849000	113530000	37390	5015	35205	229306;229307;229308;229309;229310;229311;229312;229313;229314;229315;229316	308660;308661;308662;308663;308664;308665;308666;308667;308668;308669;308670;308671;308672;308673;308674;308675;308676;308677;308678	308676			19	
MSLFYAEATPMLK	1	2 Oxidation (M)	1532.7255	0.72548798	5015	Q9NUQ9;Q9H0Q0	FAM49B;FAM49A	Protein FAM49B;Protein FAM49A	yes	no	0	0	2	0	By MS/MS				15	0								1		1				75.123	64.596	2	0.047196	33389	160513_QHF_FH_JSI9Kac_5	58.676	47.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37391	5015	35205	229317	308679	308679			1	
MSLIINTFYSNK	1	Unmodified	1429.7275	0.72753689	2869	Q58FF6	HSP90AB4P	Putative heat shock protein HSP 90-beta 4	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				83.471	82.188	2	0.052848	67560	160511_QHF_FH_JSI9i_3	43.512	26.487			1.8537	1.6173	NaN	1	1	Median	1.8537	1.6173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4389100	1316300	3072800	4389100	1316300	3072800	0	0	0	0	0	0	0	0	0	37392	2869	35206	229318	308680	308680			1	
MSLLQLVEILQSK	1	Unmodified	1500.8586	0.85855107	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	3	3	4	101.69	98.87	2;3	8.8769E-53	89774	160511_QHF_FH_JSI12i_3	215.72	172.64			1.0356	1.1629	45.474	11	4	Median	0.67363	1.296	47.103	3	1	Plateau	0.58151	0.675	63.952	3	1	Plateau	1.6632	1.5729	25.7	3	2	Plateau	0.62155	0.6297	7.5808	2	0	Median	2081200000	1099000000	982210000	358730000	209160000	149570000	491630000	317780000	173850000	873920000	325260000	548660000	356930000	246810000	110130000	37393	100	35207	229319;229320;229321;229322;229323;229324;229325;229326;229327;229328;229329;229330;229331	308681;308682;308683;308684;308685;308686;308687;308688;308689;308690;308691;308692;308693;308694;308695	308692			15	
MSLPDVDLDLK	1	Unmodified	1244.6322	0.63223953	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	84.986	84.486	2	7.0324E-05	76977	160511_QHF_FH_JSI11i_1	96.143	68.401			1.0912	1.1056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.1056	NaN	1	0	Median	28609000	15769000	12840000	0	0	0	0	0	0	0	0	0	28609000	15769000	12840000	37394	2286	35208	229332;229333	308696;308697;308698	308696			3	
MSLPLLAGGVADDINTNKK	2	Unmodified	1956.035	0.035011883	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	82.56	82.456	3	0.00022231	71556	160511_QHF_FH_JSI12i_3	55.337	41.71			0.55954	0.5392	73.81	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34597	0.31995	NaN	1	0	Median	0.90495	0.90868	NaN	1	0	Median	85312000	47023000	38289000	0	0	0	0	0	0	28647000	20239000	8407400	56666000	26784000	29882000	37395	2667	35209	229334;229335	308699	308699			1	
MSLQTDEDEHSIEMHLPYTAK	1	Unmodified	2474.1094	0.10937539	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	3	3	67.041	66.451	3;4	5.2629E-10	59027	160511_QHF_FH_JSI11i_3	108.92	105.86			0.86018	0.93397	20.207	10	2	Median	0.83066	0.71792	10.511	2	1	Median	0.71053	0.87568	15.768	2	1	Median	1.1264	1.0517	22.708	3	0	Median	1.0375	1.0753	11.888	3	0	Median	526620000	287090000	239530000	46324000	23814000	22511000	90801000	65361000	25440000	183250000	89493000	93757000	206250000	108430000	97820000	37396	5556	35210	229336;229337;229338;229339;229340;229341;229342;229343;229344;229345;229346	308700;308701;308702;308703;308704;308705;308706;308707;308708;308709;308710;308711;308712;308713;308714;308715;308716;308717	308702			18	
MSLSSMEVDVQAPR	0	Unmodified	1548.7276	0.72761325	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	67.875	66.951	2	1.3404E-10	57635	160511_QHF_FH_JSI12i_2	154.15	129.68			0.97577	1.0967	5.598	3	1	Plateau	1.3664	1.1743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.047	1.0509	NaN	1	0	Median	0.97577	1.0967	NaN	1	0	Median	96677000	43158000	53519000	20068000	7284000	12784000	0	0	0	27078000	15407000	11671000	49531000	20468000	29064000	37397	3405	35211	229347;229348;229349;229350	308718;308719;308720;308721;308722;308723	308719			6	
MSMEDENFRK	1	Unmodified	1285.5431	0.54310694	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	1		By MS/MS	By matching		2	0		2									1	1		26.611	25.975	3	0.006379	22664	160511_QHF_FH_JSI10i_2	40.589	34.157			0.85401	0.93129	32.547	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96273	1.1723	NaN	1	0	Median	0.75757	0.73984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125090000	64360000	60730000	0	0	0	43557000	22133000	21423000	81533000	42227000	39306000	0	0	0	37398	3128	35212	229351;229352	308724;308725	308724			2	
MSMEISIHR	0	Unmodified	1102.5263	0.52633467	1794	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			50.258	41.645	3	0.00046358	22935	160513_QHF_FH_JSI10Kac_6	66.273	58.994			0.98189	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98189	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13993000	7221200	6772100	0	0	0	13993000	7221200	6772100	0	0	0	0	0	0	37399	1794	35213	229353	308726;308727	308727			2	
MSMKEVDEQMLNVQNK	2	Unmodified	1922.89	0.8900039	2075;872;2477	P07437;P68371;Q13885;Q9BVA1	TUBB;TUBB4B;TUBB2A;TUBB2B	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain	no	no	0	0	0	1				By MS/MS	3	0			1										1	59.357	59.095	3	8.6633E-05	50806	160511_QHF_FH_JSI12i_3	86.378	71.683			3.7051	3.6153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7051	3.6153	NaN	1	1	Median	127760000	34384000	93378000	0	0	0	0	0	0	0	0	0	127760000	34384000	93378000	37400	872;2075;2477	35214	229354	308728;308729	308729			2	
MSNWVGILSHGLR	0	Unmodified	1468.7609	0.76090271	5283	Q9UGN5	PARP2	Poly [ADP-ribose] polymerase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.252	74.656	3	0.023156	40854	160513_QHF_FH_JSI10Kac_6	48.112	40.201			1.0859	1.299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0859	1.299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28003000	16090000	11913000	0	0	0	28003000	16090000	11913000	0	0	0	0	0	0	37401	5283	35215	229355	308730	308730			0	
MSNYDTDLFVPYFEAIQK	1	Unmodified	2180.0136	0.013607739	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								3	4	4	5	101.59	101.48	2;3	2.6798E-209	92204	160511_QHF_FH_JSI11i_1	328.14	307.47			0.99395	1.0535	18.99	15	4	Median	1.2659	1.0665	4.4131	3	1	Median	0.75919	0.88651	31.91	4	0	Median	1.1214	1.09	12.913	3	1	Median	0.94043	1.0031	16.709	5	2	Median	3252700000	1647200000	1605400000	481610000	206580000	275030000	872200000	488660000	383540000	887270000	430200000	457070000	1011600000	521780000	489800000	37402	1664	35216	229356;229357;229358;229359;229360;229361;229362;229363;229364;229365;229366;229367;229368;229369;229370;229371	308731;308732;308733;308734;308735;308736;308737;308738;308739;308740;308741;308742;308743;308744;308745;308746;308747;308748	308731			18	
MSPDEGQEELEEVQAELK	1	Unmodified	2059.9256	0.92558059	4846	Q9HC07	TMEM165	Transmembrane protein 165	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	82.929	82.777	2;3	5.3944E-05	75147	160511_QHF_FH_JSI10i_1	110.55	86.872			0.85981	0.97766	7.0722	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85981	0.97766	7.0722	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66063000	36197000	29867000	0	0	0	66063000	36197000	29867000	0	0	0	0	0	0	37403	4846	35217	229372;229373;229374	308749;308750;308751	308750			2	
MSPEEWTYLVVLLISIPIGFLFK	1	Unmodified	2694.4747	0.47467024	4180	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			108.28	102.55	3	4.3486E-14	60666	160513_QHF_FH_JSI10Kac_6	113.17	106.21			0.6781	0.80028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6781	0.80028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46790000	27966000	18824000	0	0	0	46790000	27966000	18824000	0	0	0	0	0	0	37404	4180	35218	229375	308752;308753;308754	308753			3	
MSPEVALNR	0	Acetyl (Protein N-term)	1057.5226	0.5226295	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.979	55.324	2	0.0019952	49845	160511_QHF_FH_JSI10i_1	62.546	53.306			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37405	5110	35219	229376;229377;229378;229379	308755;308756;308757;308758;308759	308757			5	
MSPLSIVTALVDK	1	Unmodified	1372.7636	0.76358805	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	3	1	102.46	102.39	2	1.0007E-22	91562	160511_QHF_FH_JSI11i_3	146.16	114.93			0.96192	0.98836	19.859	7	0	Median	1.1115	0.92338	32.502	2	0	Median	0.75232	0.88392	31.802	2	0	Median	0.91023	0.8991	14.402	2	0	Median	0.98098	0.98836	NaN	1	0	Median	3179900000	1740100000	1439800000	518000000	212860000	305140000	639230000	327080000	312160000	674420000	431140000	243280000	1348300000	769030000	579230000	37406	5552	35220	229380;229381;229382;229383;229384;229385;229386;229387	308760;308761;308762;308763;308764;308765;308766;308767;308768;308769	308760			10	
MSPNETLFLESTNK	1	Unmodified	1609.7658	0.76577289	4838	Q9HB90;Q9NQL2	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	64.07	63.258	2	0.00013108	56058	160511_QHF_FH_JSI10i_2	99.5	71.295			0.91158	0.90721	49.281	5	1	Median	0.77504	0.68158	NaN	1	0	Median	1.1781	1.4668	NaN	1	0	Median	1.3912	1.3694	58.231	2	1	Median	0.62219	0.67684	NaN	1	0	Median	99073000	44375000	54698000	15418000	7301500	8116500	19429000	6372700	13056000	46372000	20397000	25975000	17853000	10303000	7550100	37407	4838	35221	229388;229389;229390;229391;229392	308770;308771;308772;308773;308774;308775;308776;308777	308777			8	
MSQDDFQSPPIVELR	0	Unmodified	1760.8403	0.84033482	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				74.151	73.233	2	0.0063746	64951	160511_QHF_FH_JSI9i_1	61.11	52.978			0.36073	0.29537	NaN	1	1	Median	0.36073	0.29537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74640000	51914000	22727000	74640000	51914000	22727000	0	0	0	0	0	0	0	0	0	37408	4141	35222	229393	308778	308778			1	
MSQEEVNVFR	0	Unmodified	1237.5761	0.57612163	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	2	1	1	44.227	43.306	2	1.0195E-06	37155	160511_QHF_FH_JSI11i_2	125.57	109.69			0.77239	0.8096	14.161	6	4	Median	1.0561	0.86835	10.332	2	0	Median	0.67045	0.80301	1.5814	2	2	Median	0.65081	0.65289	NaN	1	1	Median	0.87453	0.9751	NaN	1	1	Median	573590000	316580000	257010000	135260000	63649000	71615000	209970000	115110000	94863000	130050000	83576000	46471000	98303000	54241000	44062000	37409	3216	35223	229394;229395;229396;229397;229398;229399	308779;308780;308781;308782;308783	308782			5	
MSQEEVNVFRLEMEGITVK	1	Unmodified	2238.1024	0.10243952	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	90.327	89.622	3	0.007389	77368	160511_QHF_FH_JSI12i_2	40.515	31.468			1.1002	1.1578	13.675	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0443	1.051	NaN	1	1	Median	1.1591	1.2753	NaN	1	0	Median	58523000	25085000	33438000	0	0	0	0	0	0	24983000	10966000	14017000	33540000	14119000	19421000	37410	3216	35224	229400;229401	308784;308785;308786	308784			3	
MSQNFHTSYAETLGK	1	Unmodified	1712.7828	0.78281994	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	40.227	40.129	3	8.9356E-06	34263	160511_QHF_FH_JSI12i_3	107.5	92.801			1.4477	1.3932	15.008	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3633	1.2529	NaN	1	0	Median	1.5374	1.5491	NaN	1	0	Median	128390000	53502000	74885000	0	0	0	0	0	0	49015000	21159000	27856000	79372000	32343000	47029000	37411	5458	35225	229402;229403	308787;308788;308789	308789			3	
MSQRRRGESSEAVPEK	1	Oxidation (M)	1861.9065	0.90645733	2919	Q5TZK3;Q5RGS3	FAM74A4;FAM74A1	Protein FAM74A4/A6;Protein FAM74A1/A2	yes	no	0	0	1	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.944	85.57	2	0.0023064	47877	160513_QHF_FH_JSI11Kac_6	64.73	29.957			3.6357	3.6014	24.229	4	4	Median	6.0236	5.1102	NaN	1	1	Median	2.5129	2.9583	NaN	1	1	Median	4.271	3.9885	NaN	1	1	Median	3.0949	3.2518	NaN	1	1	Median	4986700000	1175800000	3810900000	1262300000	219490000	1042800000	1145300000	322090000	823220000	1512700000	365360000	1147300000	1066400000	268880000	797530000	37412	2919	35226	229404;229405;229406;229407	308790;308791;308792;308793	308790		2168	4	
MSQSHEDSLTSVAWNPDGK	1	Unmodified	2087.9218	0.92183262	4766	Q9H7D7	WDR26	WD repeat-containing protein 26	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	51.533	50.545	3	0.029373	43224	160511_QHF_FH_JSI12i_2	39.905	36.761			0.90517	0.96943	7.4613	3	0	Plateau	1.0124	0.83648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88589	0.91832	NaN	1	0	Median	0.90517	0.96943	NaN	1	0	Median	112800000	54864000	57937000	35029000	13718000	21311000	0	0	0	35860000	15473000	20386000	41912000	25673000	16240000	37413	4766	35227	229408;229409;229410	308794	308794			0	
MSQVPAPVPLMSLR	0	Unmodified	1524.8156	0.81564039	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	84.133	83.282	2	0.0003077	72069	160511_QHF_FH_JSI12i_2	102.4	83.62			1.2453	1.4582	14.94	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3272	1.6206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1684	1.312	NaN	1	1	Median	180180000	76916000	103260000	0	0	0	85883000	39845000	46038000	0	0	0	94293000	37071000	57222000	37414	5474	35228	229411;229412	308795;308796	308795			2	
MSQYLDSLK	1	Unmodified	1083.527	0.52704617	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	45.838	44.744	2	0.0029552	38387	160511_QHF_FH_JSI11i_2	61.691	43.783			1.2484	1.5361	132.71	4	4	Median	5.288	4.4711	NaN	1	1	Median	1.2484	1.5361	131.87	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28847	0.31941	NaN	1	1	Median	254960000	137160000	117800000	54092000	16939000	37153000	123130000	67915000	55212000	0	0	0	77739000	52306000	25433000	37415	5309	35229	229413;229414;229415;229416;229417	308797;308798;308799;308800;308801	308799			5	
MSQYLESMQIGDTIEFR	0	Unmodified	2046.9391	0.93906259	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	89.074	88.402	2;3	1.027E-49	77751	160511_QHF_FH_JSI11i_2	178.67	166.4			1.2432	1.3154	36.754	7	7	Median	1.6612	1.42	49.316	2	2	Median	0.84394	1.0458	NaN	1	1	Median	0.98878	0.98513	NaN	1	1	Median	1.2629	1.8499	37.328	3	3	Plateau	172630000	77707000	94919000	57077000	23767000	33311000	23950000	14270000	9679300	43018000	22577000	20441000	48580000	17093000	31488000	37416	764	35230	229418;229419;229420;229421;229422;229423;229424;229425;229426	308802;308803;308804;308805;308806;308807;308808;308809;308810;308811;308812	308810			11	
MSSAPTTPPSVDK	1	Unmodified	1316.6282	0.62821678	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		26.106	26.106	3	0.046684	22384	160511_QHF_FH_JSI11i_3	20.009	13.716			1.3348	1.2767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3348	1.2767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	232680000	88543000	144140000	0	0	0	0	0	0	232680000	88543000	144140000	0	0	0	37417	2735	35231	229427	308813	308813			1	
MSSEVVDSNPYSR	0	Unmodified	1469.6457	0.64565776	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	2	2	37.424	33.673	2	1.1958E-10	30811	160511_QHF_FH_JSI12i_1	151.79	136.16			1.138	1.1763	24.813	6	2	Median	1.3757	1.1348	NaN	1	0	Median	1.1128	1.3388	NaN	1	0	Median	1.3968	1.3702	38.34	2	1	Median	0.93052	1.0245	24.611	2	1	Median	601850000	302340000	299510000	121050000	49580000	71472000	126150000	72990000	53163000	154470000	78542000	75925000	200170000	101230000	98946000	37418	4615	35232	229428;229429;229430;229431;229432;229433	308814;308815;308816;308817;308818;308819;308820;308821;308822;308823;308824	308817			11	
MSSFGDFVALSDVCDVPTAK	1	Unmodified	2144.9758	0.97584202	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	97.482	97.08	2	0.00018101	83518	160511_QHF_FH_JSI12i_2	78.763	66.617			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1530600	0	1530600	0	0	0	0	0	0	0	0	0	1530600	0	1530600	37419	1381	35233	229434;229435	308825;308826	308825			2	
MSSFGPDSLLLPHR	0	Unmodified	1555.7817	0.78169773	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	71.837	71.54	3	9.4034E-05	62054	160511_QHF_FH_JSI12i_3	72.705	66.228			0.92719	0.93456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92719	0.93456	NaN	1	0	Median	29338000	14442000	14896000	0	0	0	0	0	0	0	0	0	29338000	14442000	14896000	37420	719	35234	229436;229437	308827;308828;308829	308828			3	
MSSKPINFSVILK	2	Unmodified	1462.8218	0.82177163	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	1	By matching			By MS/MS	3	0			2							1			1	69.84	68.948	3	0.0015032	59446	160511_QHF_FH_JSI12i_3	55.724	42.957			1.2839	1.1657	2.0284	2	0	Median	1.4438	1.1825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1417	1.1491	NaN	1	0	Median	147910000	63631000	84281000	61242000	23039000	38203000	0	0	0	0	0	0	86670000	40592000	46079000	37421	5603	35235	229438;229439	308830	308830			1	
MSSPEDDSDTK	1	Unmodified	1210.466	0.46596206	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	10.046	9.6654	2	0.00010755	7206	160511_QHF_FH_JSI9i_1	85.958	80.476			1.0078	0.72841	20.419	4	0	Linear	1.2326	1.025	NaN	1	0	Median	0.87412	1.0195	NaN	1	0	Median	1.1619	1.1396	NaN	1	0	Median	0.69294	0.71387	NaN	1	0	Median	422650000	222140000	200510000	98084000	52709000	45375000	106110000	60111000	45997000	91110000	39352000	51758000	127350000	69966000	57382000	37422	2670	35236	229440;229441;229442;229443	308831;308832;308833	308833			3	
MSSPLADAK	1	Unmodified	918.44807	0.44806757	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	27.162	26.689	2	0.013763	23481	160511_QHF_FH_JSI10i_1	46.129	35.06			1.1183	1.3158	56.95	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1183	1.3158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77068	0.79686	69.352	2	1	Median	273010000	110160000	162850000	0	0	0	145760000	46813000	98944000	0	0	0	127250000	63346000	63904000	37423	1684	35237	229444;229445;229446	308834;308835	308835			2	
MSSSDTPLGTVALLQEK	1	Unmodified	1775.8975	0.89751535	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	81.504	80.985	2	1.3838E-07	73824	160511_QHF_FH_JSI11i_1	126.09	106.95			0.5611	0.76428	20.843	4	3	Linear	1.0884	0.87524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85958	0.81496	28.25	2	2	Median	0.64706	0.64954	NaN	1	0	Median	92492000	49023000	43469000	19891000	9511800	10379000	0	0	0	44982000	23329000	21653000	27619000	16182000	11436000	37424	318	35238	229447;229448;229449;229450	308836;308837;308838;308839;308840	308837			5	
MSSSEEESK	1	Unmodified	1012.4019	0.40190524	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	5.1231	4.8077	2	1.3729E-08	2735	160511_QHF_FH_JSI12i_1	152.34	148.77			0.93093	0.82869	32.879	4	0	Median	1.0334	0.84265	NaN	1	0	Median	1.2975	1.5401	NaN	1	0	Median	0.83861	0.81495	NaN	1	0	Median	0.72696	0.75444	NaN	1	0	Median	1698200000	863480000	834730000	308040000	153220000	154820000	470640000	198300000	272340000	378980000	193920000	185060000	540550000	318040000	222510000	37425	1823	35239	229451;229452;229453;229454	308841;308842;308843	308841			3	
MSSTFIGNSTAIQELFK	1	Unmodified	1872.9291	0.92914983	2430	Q13509	TUBB3	Tubulin beta-3 chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.25	0.433		3	1								2	2		98.439	98.347	2;3	2.944E-10	89390	160511_QHF_FH_JSI11i_3	150.21	7.3052			0.95751	1.0228	68.582	2	2	Median	NaN	NaN	NaN	0	0	Median	0.51244	0.62974	NaN	1	1	Median	1.7891	1.661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30642000	11721000	18921000	0	0	0	9163600	5112300	4051300	21478000	6608400	14870000	0	0	0	37426	2430	35240	229455;229456;229457;229458	308844;308845;308846;308847	308844			4	
MSSTIFSTGGK	1	Unmodified	1114.5329	0.53285983	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.88	1	6					1	2		3	2	4	1	42.671	38.902	2	4.1313E-10	33193	160511_QHF_FH_JSI12i_2	139.38	119.39			1.246	1.1627	46.78	10	5	Median	1.2119	0.97337	77.612	3	2	Median	1.1214	1.3739	53.046	2	2	Median	1.1571	1.1627	25.163	4	1	Median	1.5178	1.6811	NaN	1	0	Median	597530000	255270000	342250000	138200000	63218000	74984000	157950000	69391000	88564000	198070000	78142000	119920000	103300000	44521000	58783000	37427	2366	35241	229459;229460;229461;229462;229463;229464;229465;229466;229467;229468	308848;308849;308850;308851;308852;308853;308854;308855;308856;308857;308858	308849			11	
MSSTIFSTGGKDPLSANHSLKPLPSVPEEK	3	Acetyl (K)	3195.6122	0.61217937	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	79.251	71.083	4	3.1224E-38	39633	160513_QHF_FH_JSI10Kac_6	136.66	114.99			0.74202	0.79888	51.283	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97013	1.1481	NaN	1	0	Median	0.56754	0.5559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163550000	115530000	48016000	0	0	0	89232000	54107000	35125000	41648000	28757000	12891000	32666000	32666000	0	37428	2366	35242	229469;229470;229471	308859;308860;308861;308862	308861	2438		4	
MSSYAFFVQTCR	0	Unmodified	1495.6588	0.6588054	928;1280	P09429;B2RPK0;P26583	HMGB1;HMGB1P1;HMGB2	High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.19	6.7		4	4					1	7	3	5	4	4	70.563	65.658	2;3	1.8458E-41	55387	160511_QHF_FH_JSI10i_3	198.25	74.5			0.93561	0.99409	17.9	16	0	Median	1.1029	0.94582	15.22	3	0	Median	0.86653	1.0299	6.1304	5	0	Median	0.87245	0.8218	6.1702	4	0	Median	1.2259	1.2541	23.697	4	0	Median	6018100000	2962300000	3055800000	736330000	363490000	372840000	2660800000	1375300000	1285500000	1672200000	802430000	869790000	948670000	421010000	527660000	37429	928;1280	35243	229472;229473;229474;229475;229476;229477;229478;229479;229480;229481;229482;229483;229484;229485;229486;229487	308863;308864;308865;308866;308867;308868;308869;308870;308871;308872;308873;308874;308875;308876;308877;308878;308879;308880;308881;308882;308883;308884;308885	308867			22	
MSSYAFFVQTCR	0	Oxidation (M)	1511.6537	0.65372002	928;1280	P09429;B2RPK0;P26583	HMGB1;HMGB1P1;HMGB2	High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.498								6	5	3	2	2	4	68.704	58.758	2	8.3292E-31	32208	160513_QHF_FH_JSI10Kac_6	176.65	171.96			1.1667	1.0388	22.687	9	0	Median	1.2299	1.0524	5.8532	2	0	Median	0.87178	1.033	0.79257	2	0	Median	0.8754	0.81987	5.6476	2	0	Median	1.2481	1.3552	6.1211	3	0	Plateau	295200000	140540000	154660000	75646000	32901000	42746000	95109000	50226000	44884000	58187000	29016000	29171000	66260000	28396000	37863000	37430	928;1280	35243	229488;229489;229490;229491;229492;229493;229494;229495;229496;229497;229498	308886;308887;308888;308889;308890;308891;308892;308893;308894;308895;308896;308897;308898;308899;308900;308901	308901		506	16	
MSSYAFFVQTCREEHK	1	Unmodified	2018.8979	0.89786647	928;1280	P09429;B2RPK0;P26583	HMGB1;HMGB1P1;HMGB2	High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	59.362	50.151	2;3;4	2.1251E-16	26556	160513_QHF_FH_JSI9Kac_6	135.47	50.958			1.0407	1.0175	27.834	7	3	Median	1.1548	0.98848	9.222	2	0	Median	0.69654	0.83155	45.535	2	1	Median	0.93545	0.92124	14.049	2	2	Median	1.4017	1.4758	NaN	1	0	Median	755290000	355850000	399440000	209760000	67184000	142580000	415120000	227780000	187340000	78181000	36633000	41548000	52225000	24253000	27972000	37431	928;1280	35244	229499;229500;229501;229502;229503;229504;229505	308902;308903;308904;308905;308906;308907;308908;308909;308910;308911;308912;308913	308906			12	
MSSYAFFVQTCREEHK	1	Oxidation (M)	2034.8928	0.8927811	928;1280	P09429;B2RPK0;P26583	HMGB1;HMGB1P1;HMGB2	High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2	no	no	0	0	1	1		By MS/MS		By MS/MS	16	0									6		3		3	52.607	43.278	3;4	0.0016772	23682	160513_QHF_FH_JSI10Kac_6	59.261	53.357			0.74597	0.86182	26.926	5	3	Linear	NaN	NaN	NaN	0	0	Median	0.76134	0.88448	15.393	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1632	1.2536	10.517	3	2	Plateau	147430000	73282000	74152000	0	0	0	83154000	46737000	36417000	0	0	0	64280000	26545000	37735000	37432	928;1280	35244	229506;229507;229508;229509;229510;229511	308914;308915;308916;308917;308918;308919	308917		506	6	
MSTEEIIQR	0	Unmodified	1105.5438	0.54375887	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	36.251	35.539	2	1.9956E-06	30139	160511_QHF_FH_JSI12i_2	128.69	108.17			1.035	0.99736	7.5575	7	0	Median	1.1584	0.99507	NaN	1	0	Median	0.83738	1.0075	2.1803	2	0	Median	0.96357	0.95648	5.9181	2	0	Median	1.0531	1.13	1.561	2	0	Median	1878000000	936410000	941630000	260560000	129230000	131330000	611030000	325460000	285570000	591830000	298210000	293620000	414620000	183510000	231110000	37433	1131	35245	229512;229513;229514;229515;229516;229517;229518	308920;308921;308922;308923;308924;308925;308926;308927;308928;308929;308930;308931;308932	308921			13	
MSTGTFVVSQPLNYR	0	Unmodified	1698.8399	0.83994089	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.36	1	6						1		1	2	4	1	68.207	67.4	2;3	1.2083E-29	59801	160511_QHF_FH_JSI10i_2	186.02	170.48			0.86659	0.99372	17.775	6	4	Median	1.2637	1.0644	NaN	1	1	Median	0.80663	0.99122	12.064	2	1	Median	1.0572	1.0452	36.109	2	2	Median	0.86218	0.92772	NaN	1	0	Median	391170000	193500000	197660000	61479000	24270000	37210000	125070000	70394000	54678000	121920000	60085000	61833000	82698000	38756000	43942000	37434	1645	35246	229519;229520;229521;229522;229523;229524;229525;229526	308933;308934;308935;308936;308937;308938;308939;308940;308941;308942	308941			10	
MSTHKESK	2	Acetyl (K)	988.46478	0.46478027	4660	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		6.0233	-3.5004	3	0.016289	2021	160513_QHF_FH_JSI11Kac_5	44.318	33.153			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37435	4660	35247	229527	308943	308943	3212		1	
MSTMTPK	1	Unmodified	794.36665	0.36664613	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	12.784	12.173	2	0.015369	9482	160511_QHF_FH_JSI11i_2	64.757	29.652			1.1133	1.1055	14.531	4	0	Median	1.3896	1.1142	NaN	1	0	Median	0.73702	0.90808	NaN	1	0	Median	1.0589	1.0968	NaN	1	0	Median	1.1705	1.2944	NaN	1	0	Median	1381600000	622840000	758800000	92730000	44688000	48042000	278620000	155760000	122860000	630830000	234300000	396530000	379460000	188100000	191360000	37436	2655	35248	229528;229529;229530;229531	308944;308945;308946;308947	308947			4	
MSTSPEAFLALR	0	Unmodified	1321.67	0.67002202	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	1	3	1	77.428	76.703	2	4.4605E-06	67788	160511_QHF_FH_JSI9i_2	123.63	95.227			0.94065	0.95551	11.029	7	2	Median	1.3239	1.1186	9.1129	2	0	Median	0.7599	0.94549	NaN	1	0	Median	0.93355	0.95551	2.6612	3	2	Plateau	0.75076	0.84377	NaN	1	0	Median	1874000000	946900000	927090000	387910000	183450000	204460000	396240000	221700000	174540000	630930000	289100000	341830000	458910000	252650000	206260000	37437	2094	35249	229532;229533;229534;229535;229536;229537;229538	308948;308949;308950;308951;308952;308953;308954;308955;308956;308957;308958;308959;308960	308956			13	
MSVDAVEIETLRK	1	Unmodified	1489.781	0.78102903	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	59.614	58.923	2;3	1.8659E-16	52340	160511_QHF_FH_JSI11i_3	134.75	105.79			1.0979	1.1109	24.811	10	5	Median	1.1791	1.0009	NaN	1	0	Median	1.0626	1.2961	22.063	2	1	Median	1.1597	1.1765	0.71102	3	2	Plateau	0.99417	1.0069	30.427	4	2	Median	1468700000	720060000	748670000	140510000	72833000	67672000	261390000	122780000	138620000	276480000	127180000	149300000	790350000	397270000	393080000	37438	2087	35250	229539;229540;229541;229542;229543;229544;229545;229546;229547;229548;229549;229550	308961;308962;308963;308964;308965;308966;308967;308968;308969;308970;308971;308972;308973;308974;308975;308976	308962			16	
MSVIWDK	1	Unmodified	877.43677	0.4367746	2739	Q16555;Q14195	DPYSL2;DPYSL3	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	50.87	49.909	2	0.013387	43051	160511_QHF_FH_JSI11i_2	70.525	31.733			1.2505	1.3305	51.362	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90587	0.9253	NaN	1	1	Median	1.7261	1.9131	NaN	1	1	Median	398500000	141730000	256780000	0	0	0	0	0	0	193990000	83568000	110420000	204510000	58158000	146350000	37439	2739	35251	229551;229552	308977;308978	308978			2	
MSVLNMVVR	0	Unmodified	1047.5569	0.55690651	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	71.699	70.897	2	7.8761E-05	61349	160511_QHF_FH_JSI12i_3	95.605	77.757			0.95006	0.89056	27.348	5	0	Median	1.09	0.89056	NaN	1	0	Median	0.51823	0.61418	29.857	2	0	Median	1.0254	0.96613	NaN	1	0	Median	0.95006	0.93516	NaN	1	0	Median	481090000	266860000	214230000	114480000	58414000	56069000	114170000	76236000	37931000	123150000	58435000	64711000	129290000	73771000	55522000	37440	2795	35252	229553;229554;229555;229556;229557	308979;308980;308981;308982	308982			4	
MSVQPTVSLGGFEITPPVVLR	0	Unmodified	2226.2082	0.20822522	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	6.47	6	8	3						7	6	6	6	6	99.662	97.191	2;3	2.6626E-298	89235	160511_QHF_FH_JSI11i_2	366.25	347.2			1.103	1.0834	11.239	23	2	Median	1.2718	1.0801	10.767	6	0	Median	0.87108	1.0448	8.0844	6	0	Median	1.2108	1.1878	3.4811	5	1	Median	0.99765	1.0683	14.124	6	1	Median	40111000000	19382000000	20729000000	7857400000	3503400000	4354000000	9507500000	5089600000	4417900000	10657000000	4908600000	5748400000	12089000000	5880300000	6208500000	37441	857	35253	229558;229559;229560;229561;229562;229563;229564;229565;229566;229567;229568;229569;229570;229571;229572;229573;229574;229575;229576;229577;229578;229579;229580;229581	308983;308984;308985;308986;308987;308988;308989;308990;308991;308992;308993;308994;308995;308996;308997;308998;308999;309000;309001;309002;309003;309004;309005;309006;309007;309008;309009;309010;309011;309012	308998			30	
MSVQPTVSLGGFEITPPVVLR	0	Oxidation (M)	2242.2031	0.20313984	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	3	3	3	101.44	101.34	2;3	4.1065E-120	89016	160511_QHF_FH_JSI11i_2	273.44	259.41			1.0713	1.0924	8.0351	11	0	Median	1.1203	0.94958	6.9277	2	0	Median	0.87161	1.0745	5.9366	3	0	Median	1.1044	1.0924	1.1907	3	0	Median	1.0148	1.1349	2.6402	3	0	Plateau	2748900000	1404400000	1344500000	569810000	277260000	292550000	738490000	411180000	327300000	734450000	358900000	375550000	706120000	357060000	349060000	37442	857	35253	229582;229583;229584;229585;229586;229587;229588;229589;229590;229591;229592	309013;309014;309015;309016;309017;309018	309016		393	6	
MSWFLPTVLDTGQGFKLVKS	2	2 Acetyl (K)	2337.2079	0.20789087	4643	Q9H0V1	TMEM168	Transmembrane protein 168	yes	yes	2	0	0	2	By matching		By MS/MS		16	0									2	1		1		96.818	87.582	3	0.015959	49805	160513_QHF_FH_JSI11Kac_6	36.111	24.155			1.6947	1.5111	28.686	2	0	Median	2.1999	1.8509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3056	1.2337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	541440000	210890000	330540000	211620000	60890000	150730000	0	0	0	329820000	150010000	179810000	0	0	0	37443	4643	35254	229593;229594	309019	309019	3207;3208		1	
MSYLELMEHPFFTLHK	1	Unmodified	2021.9743	0.97432588	1587	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	2	2	95.643	91.044	4	1.2243E-23	87625	160511_QHF_FH_JSI12i_3	183.01	172.91			1.0119	1.025	12.342	6	0	Median	0.96798	0.83582	NaN	1	0	Median	0.99798	1.1263	NaN	1	0	Median	1.0785	1.025	7.1321	2	0	Median	0.97005	1.0004	15.351	2	0	Median	511160000	273600000	237560000	45487000	24125000	21362000	31463000	16045000	15418000	157630000	86323000	71303000	276580000	147110000	129470000	37444	1587	35255	229595;229596;229597;229598;229599;229600	309020;309021;309022;309023;309024	309024			5	
MSYLLYQMLCGIK	1	Unmodified	1618.7921	0.79212776	1574	P45984;P53779;P45983	MAPK9;MAPK10;MAPK8	Mitogen-activated protein kinase 9;Mitogen-activated protein kinase 10;Mitogen-activated protein kinase 8	yes	no	0	0	0	0			By MS/MS		16	0									1			1		94.784	85.392	2	4.1497E-06	48286	160513_QHF_FH_JSI11Kac_6	118.71	100.85			0.37711	0.36253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37711	0.36253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	117670000	86359000	31313000	0	0	0	0	0	0	117670000	86359000	31313000	0	0	0	37445	1574	35256	229601	309025	309025			1	
MTAAQPSETTVGNMVR	0	Unmodified	1691.7971	0.7970898	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	45.993	44.908	2	7.8875E-05	38681	160511_QHF_FH_JSI11i_2	88.187	75.231			1.0908	0.34141	73.662	4	3	Linear	1.6819	1.4635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30933	0.31667	NaN	1	0	Median	1.0908	1.1764	39.635	2	2	Median	53738000	29798000	23939000	12245000	3983800	8261000	0	0	0	21176000	13554000	7621900	20317000	12260000	8056500	37446	1682	35257	229602;229603;229604;229605;229606;229607;229608	309026;309027;309028;309029;309030;309031;309032	309030			7	
MTADGRLPADQR	0	Unmodified	1329.6459	0.64593253	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	18.658	18.051	3	0.00068872	14754	160511_QHF_FH_JSI11i_2	61.233	52.503			1.0592	1.1926	13.525	5	0	Median	1.632	1.3952	NaN	1	0	Median	0.96979	1.1926	NaN	1	0	Median	1.0592	1.0854	NaN	1	0	Median	1.1582	1.2811	19.476	2	0	Median	439780000	226120000	213660000	80588000	28556000	52032000	86564000	50146000	36418000	137010000	81587000	55418000	135630000	65835000	69792000	37447	2198	35258	229609;229610;229611;229612;229613	309033;309034;309035	309034			3	
MTAEEMASDELK	1	Unmodified	1353.5792	0.57921768	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.582	50.908	2	6.0804E-08	45755	160511_QHF_FH_JSI10i_1	138.76	112.38			0.96657	0.97136	4.9097	4	0	Median	1.1123	0.90535	NaN	1	0	Median	0.83974	0.99138	NaN	1	0	Median	0.97807	0.95174	NaN	1	0	Median	0.95519	1.0118	NaN	1	0	Median	2656300000	1223900000	1432400000	663450000	298790000	364660000	544400000	275800000	268600000	690900000	314920000	375980000	757520000	334370000	423150000	37448	1220	35259	229614;229615;229616;229617	309036;309037;309038;309039;309040;309041;309042;309043	309041			8	
MTAEEMK	1	Acetyl (Protein N-term)	880.36704	0.36704006	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	30.644	30.076	1	0.0059948	26992	160511_QHF_FH_JSI12i_1	55.676	50.586			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21582000	0	21582000	0	0	0	0	0	0	0	0	0	21582000	0	21582000	37449	2193	35260	229618	309044	309044			1	
MTAIIFSDYR	0	Oxidation (M)	1231.5907	0.59070906	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	15.5	0.5								2	2	2			2	65.979	55.936	2	0.0059562	29144	160513_QHF_FH_JSI12Kac_6	59.067	41.631			1.1739	1.1042	36.9	4	1	Median	1.059	0.88936	40.141	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1927	1.2976	32.354	2	0	Median	28198000	14264000	13935000	15655000	7627300	8028000	0	0	0	0	0	0	12543000	6636300	5906800	37450	3903	35261	229619;229620;229621;229622	309045;309046;309047;309048	309048		2338	4	
MTAIIFSDYR	0	Unmodified	1215.5958	0.59579444	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.23		1						5	3	3	2	2	2	75.407	66.429	2	1.5804E-08	35503	160513_QHF_FH_JSI9Kac_6	141.02	120.72			0.98741	0.92666	14.526	9	3	Median	0.98741	0.85213	8.7644	3	2	Median	0.76449	0.92006	1.0105	2	1	Median	1.0847	1.0478	6.9738	2	0	Median	1.0045	1.0875	19.207	2	0	Median	454590000	238460000	216130000	135250000	73835000	61420000	81238000	41781000	39457000	141660000	75745000	65918000	96436000	47102000	49334000	37451	3903	35261	229623;229624;229625;229626;229627;229628;229629;229630;229631	309049;309050;309051;309052;309053;309054;309055;309056;309057;309058;309059;309060;309061;309062;309063	309061			15	
MTALAQDFAVGLGPR	0	Unmodified	1545.7973	0.79734779	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	81.177	80.256	3	0.0013508	69399	160511_QHF_FH_JSI12i_2	47.622	35.067			0.25501	0.29208	15.944	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28044	0.32693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23188	0.26094	NaN	1	1	Median	15119000	11857000	3262200	0	0	0	5849200	4391000	1458200	0	0	0	9269600	7465500	1804000	37452	1704	35262	229632;229633	309064;309065	309064			2	
MTAMDNASK	1	Oxidation (M)	983.40522	0.40521648	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	5.6656	5.313	2	0.022233	3284	160511_QHF_FH_JSI11i_1	44.98	29.348			1.0295	1.043	26.678	3	0	Plateau	1.6177	1.3252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3316	1.3103	NaN	1	0	Median	0.79593	0.83022	NaN	1	0	Median	311050000	154970000	156090000	70146000	36714000	33432000	0	0	0	115650000	44937000	70710000	125260000	73316000	51944000	37453	1454	35263	229634;229635;229636	309066;309067	309066			2	
MTAMDNASK	1	Unmodified	967.4103	0.41030186	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	3	1	11.706	10.058	2	0.00010761	8488	160511_QHF_FH_JSI10i_1	111.06	85.167			0.59621	0.63273	116.99	5	4	Median	NaN	NaN	NaN	0	0	Median	0.43001	0.50334	NaN	1	1	Median	0.748	0.72307	157.94	3	3	Median	0.59621	0.63273	NaN	1	0	Median	2990300000	1515500000	1474800000	0	0	0	1002600000	535620000	466970000	1155800000	555040000	600790000	831900000	424840000	407060000	37454	1454	35263	229637;229638;229639;229640;229641	309068;309069;309070;309071;309072;309073	309073			6	
MTANSVLEPGNSEVSLVCEK	1	Unmodified	2163.0188	0.018769471	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	70.062	69.468	2	5.7228E-24	62894	160511_QHF_FH_JSI10i_1	137.46	108.65			1.4923	1.4805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4923	1.4805	NaN	1	1	Median	13941000	3486700	10455000	0	0	0	0	0	0	0	0	0	13941000	3486700	10455000	37455	962	35264	229642;229643;229644	309074;309075;309076	309076			3	
MTATGSGENSTVAEHLIAQHSAIK	1	Unmodified	2452.2016	0.20163629	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.73		6	7						4	4	5	5	3	54.412	51.629	3;4	5.3166E-63	45592	160511_QHF_FH_JSI11i_3	217.11	204.8			0.95183	0.91809	19.705	17	2	Median	0.95391	0.80775	22.765	4	1	Median	0.97126	1.1072	20.584	5	0	Median	1.0306	0.98848	22.511	5	1	Median	0.89883	0.90545	2.2064	3	0	Plateau	4642800000	2114000000	2528800000	550940000	266370000	284570000	823350000	411050000	412300000	2057500000	819640000	1237900000	1211000000	616960000	594020000	37456	3232	35265	229645;229646;229647;229648;229649;229650;229651;229652;229653;229654;229655;229656;229657;229658;229659;229660;229661	309077;309078;309079;309080;309081;309082;309083;309084;309085;309086;309087;309088;309089;309090;309091;309092;309093;309094;309095;309096;309097;309098;309099;309100;309101;309102;309103;309104;309105;309106;309107;309108;309109;309110;309111;309112	309081			36	
MTATGSGENSTVAEHLIAQHSAIK	1	Oxidation (M)	2468.1966	0.19655092	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	47.154	47.033	4	1.4042E-16	41518	160511_QHF_FH_JSI11i_3	121.5	114.23			0.98485	0.95418	11.043	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0909	1.0317	NaN	1	1	Median	0.88914	0.88251	NaN	1	0	Median	316020000	172650000	143370000	0	0	0	0	0	0	163940000	89811000	74124000	152090000	82840000	69247000	37457	3232	35265	229662;229663	309113;309114	309113		2230	2	
MTATGSGENSTVAEHLIAQHSAIKMLHSR	1	Acetyl (K)	3118.5288	0.52880087	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.798	64.442	4	1.2915E-21	34975	160513_QHF_FH_JSI11Kac_6	157.96	151.09			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26654000	26654000	0	0	0	0	0	0	0	26654000	26654000	0	0	0	0	37458	3232	35266	229664	309115	309115	2807		1	
MTDAAVSFAK	1	Acetyl (Protein N-term)	1081.5114	0.51139611	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.458	64.844	2	2.6148E-08	58799	160511_QHF_FH_JSI10i_1	56.916	36.919			1.0154	1.079	10.319	4	0	Median	1.4778	1.2342	NaN	1	0	Median	0.92511	1.1021	NaN	1	0	Median	0.99733	0.96237	NaN	1	0	Median	1.0338	1.0563	NaN	1	0	Median	270040000	127640000	142410000	63455000	26833000	36621000	75405000	35523000	39883000	61454000	30910000	30544000	69731000	34373000	35358000	37459	826	35267	229665;229666;229667;229668	309116;309117;309118;309119;309120;309121	309120			6	
MTDDELVYNIHLAVNFLVSLLK	1	Unmodified	2546.3454	0.34544698	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.6	1.33				1					12	1	10	2		106.84	100.06	2;3;4	1.4066E-168	59192	160513_QHF_FH_JSI10Kac_6	316.29	274.08			0.97235	1.1081	30.458	10	4	Median	1.1158	0.9505	NaN	1	0	Median	0.95603	1.1414	35.13	7	4	Median	1.0797	1.0666	15.411	2	0	Median	NaN	NaN	NaN	0	0	Median	5348300000	2641300000	2707000000	33126000	16651000	16475000	5048500000	2498700000	2549800000	266650000	125940000	140710000	0	0	0	37460	2036	35268	229669;229670;229671;229672;229673;229674;229675;229676;229677;229678;229679;229680;229681	309122;309123;309124;309125;309126;309127;309128;309129;309130;309131;309132;309133;309134;309135;309136;309137;309138;309139	309132			18	
MTDDELVYNIHLAVNFLVSLLK	1	Oxidation (M)	2562.3404	0.34036161	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				105.05	95.83	3	1.0157E-07	55363	160513_QHF_FH_JSI9Kac_6	125.11	118.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120480000	120480000	0	120480000	120480000	0	0	0	0	0	0	0	0	0	0	37461	2036	35268	229682	309140	309140		1697	1	
MTDDELVYNIHLAVNFLVSLLKK	2	Unmodified	2674.4404	0.44041	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			104	98.278	3;4	1.8448E-48	58154	160513_QHF_FH_JSI10Kac_6	180.37	173.42			0.71013	0.84227	5.7771	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71013	0.84227	5.7771	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166920000	105630000	61296000	0	0	0	166920000	105630000	61296000	0	0	0	0	0	0	37462	2036	35269	229683;229684	309141;309142;309143	309141			3	
MTDEEIMEK	1	Unmodified	1124.473	0.47296169	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.427	30.198	2	0.0013004	26952	160511_QHF_FH_JSI11i_1	78.113	20.523			0.565	0.55458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.565	0.55458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	138390000	74194000	64199000	0	0	0	0	0	0	138390000	74194000	64199000	0	0	0	37463	2366	35270	229685	309144	309144			1	
MTDFDRFK	1	Unmodified	1058.4855	0.48551571	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.85		10	5					1	4	6	4	5	5	37.462	34.504	2;3	0.00011439	30375	160511_QHF_FH_JSI10i_2	105.57	73.633			1.4139	1.2884	51.806	20	8	Median	1.3602	1.1559	68.399	6	2	Median	0.93409	1.1236	43.304	4	1	Median	2.1603	2.2123	61.883	5	4	Median	1.4057	1.4281	26.841	5	1	Median	10602000000	4419400000	6183100000	1436500000	675510000	760970000	1610100000	805470000	804660000	3976900000	1491300000	2485600000	3579000000	1447100000	2131900000	37464	1720	35271	229686;229687;229688;229689;229690;229691;229692;229693;229694;229695;229696;229697;229698;229699;229700;229701;229702;229703;229704;229705	309145;309146;309147;309148;309149;309150;309151;309152;309153;309154;309155;309156;309157;309158;309159;309160;309161;309162;309163;309164;309165;309166;309167;309168;309169;309170;309171;309172;309173;309174;309175	309165			31	
MTDLTSSIPK	1	Unmodified	1091.5533	0.55326092	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		47.647	46.423	2	0.0091221	41894	160511_QHF_FH_JSI11i_1	50.292	31.198			1.4354	1.1714	NaN	1	1	Median	1.4354	1.1714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102510000	45447000	57058000	102510000	45447000	57058000	0	0	0	0	0	0	0	0	0	37465	4946	35272	229706;229707	309176;309177	309176			2	
MTDQEAIQDLWQWR	0	Unmodified	1818.8359	0.83591814	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.63	2.83	9	26	12						2	11	11	15	12	98.642	98.155	2;3	8.8012E-156	84997	160511_QHF_FH_JSI12i_2	304.51	286.18			0.94696	1.012	18.445	41	13	Median	1.1636	1.0019	22.353	6	3	Median	0.83667	0.99953	18.035	10	3	Median	1.0356	1.0223	17.433	14	3	Median	0.92704	1.012	18.817	11	4	Median	11781000000	5943500000	5837200000	1292800000	595960000	696860000	2299600000	1283400000	1016200000	4550000000	2183500000	2366500000	3638200000	1880600000	1757600000	37466	857	35273	229708;229709;229710;229711;229712;229713;229714;229715;229716;229717;229718;229719;229720;229721;229722;229723;229724;229725;229726;229727;229728;229729;229730;229731;229732;229733;229734;229735;229736;229737;229738;229739;229740;229741;229742;229743;229744;229745;229746;229747;229748;229749;229750;229751;229752;229753;229754;229755;229756	309178;309179;309180;309181;309182;309183;309184;309185;309186;309187;309188;309189;309190;309191;309192;309193;309194;309195;309196;309197;309198;309199;309200;309201;309202;309203;309204;309205;309206;309207;309208;309209;309210;309211;309212;309213;309214;309215;309216;309217;309218;309219;309220;309221;309222;309223;309224;309225;309226;309227;309228;309229;309230;309231;309232;309233;309234;309235;309236;309237;309238;309239;309240;309241;309242;309243;309244;309245;309246;309247;309248;309249	309190			70	
MTDQEAIQDLWQWR	0	Oxidation (M)	1834.8308	0.83083277	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	3	9								2	3	3	4	89.495	88.948	2;3	8.5479E-30	78333	160511_QHF_FH_JSI9i_2	191.29	161.99			1.1149	1.1877	18.227	12	4	Median	1.4644	1.2802	5.9517	2	0	Median	0.95659	1.1709	15.483	3	1	Median	1.2268	1.2047	32.216	3	1	Median	1.0552	1.1524	10.89	4	2	Median	347240000	160010000	187230000	57953000	26234000	31720000	94061000	43842000	50219000	89516000	42775000	46741000	105710000	47161000	58549000	37467	857	35273	229757;229758;229759;229760;229761;229762;229763;229764;229765;229766;229767;229768	309250;309251;309252;309253;309254;309255;309256;309257;309258;309259;309260;309261;309262;309263;309264;309265;309266	309258		394	17	
MTDQEAIQDLWQWRK	1	Unmodified	1946.9309	0.93088116	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.54	3.63		6	6						1	2	6	4	1	85.377	84.516	2;3	1.5356E-12	75938	160511_QHF_FH_JSI11i_3	197.56	155.01			1.0854	1.2661	44.033	12	11	Median	0.90692	0.77445	5.4049	2	2	Median	1.054	1.2868	17.948	5	4	Median	1.4648	1.4351	38.223	4	4	Median	3.5607	3.5712	NaN	1	1	Median	3263000000	1328000000	1935000000	279480000	143580000	135900000	1516100000	721390000	794750000	1376300000	445100000	931180000	91097000	17943000	73154000	37468	857	35274	229769;229770;229771;229772;229773;229774;229775;229776;229777;229778;229779;229780;229781	309267;309268;309269;309270;309271;309272;309273;309274;309275;309276;309277;309278;309279;309280;309281;309282;309283	309269			17	
MTDQEAIQDLWQWRK	1	Oxidation (M)	1962.9258	0.92579578	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	76.151	75.874	3	0.0016577	67771	160511_QHF_FH_JSI11i_3	53.169	45.938			1.1901	1.1694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1901	1.1694	NaN	1	1	Median	45590000	15456000	30134000	0	0	0	0	0	0	0	0	0	45590000	15456000	30134000	37469	857	35274	229782;229783	309284;309285	309284		394	2	
MTDSFTEQADQVTAEVGK	1	Unmodified	1955.8782	0.87823647	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	65.955	65.37	2;3	1.0822E-98	59449	160511_QHF_FH_JSI12i_1	263.59	251.23			1.0144	1.0373	16.732	9	2	Median	1.3377	1.1058	0.99812	2	0	Median	0.83949	1.0089	3.9236	2	0	Median	0.72504	0.69293	17.556	3	2	Plateau	1.0823	1.1241	2.4056	2	0	Median	484790000	249780000	235020000	88803000	36891000	51912000	118960000	68808000	50152000	171400000	87363000	84036000	105630000	56715000	48916000	37470	927	35275	229784;229785;229786;229787;229788;229789;229790;229791;229792	309286;309287;309288;309289;309290;309291;309292;309293;309294;309295;309296;309297;309298;309299	309290			14	
MTDVFEGSIIR	0	Unmodified	1266.6278	0.62782285	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.349	67.447	2	0.0040387	58120	160511_QHF_FH_JSI12i_2	55.084	30.565			1.0442	0.75679	30.142	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0442	1.2576	NaN	1	1	Median	1.2303	1.2219	NaN	1	1	Median	0.66982	0.73591	NaN	1	0	Median	255830000	130320000	125510000	0	0	0	73881000	35192000	38690000	102110000	53536000	48571000	79838000	41588000	38250000	37471	1532	35276	229793;229794;229795;229796	309300;309301;309302;309303;309304	309301			5	
MTEEPLMCAYCVTEPGAGSDVAGIK	1	Unmodified	2685.1794	0.17944557	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		82.987	82.624	3	0.0018884	75332	160511_QHF_FH_JSI11i_1	41.904	38.442			0.7548	0.72212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7548	0.72212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21189000	11074000	10115000	0	0	0	0	0	0	21189000	11074000	10115000	0	0	0	37472	997	35277	229797;229798	309305;309306	309306			2	
MTEIQTPENTPR	0	Unmodified	1415.6715	0.67147858	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	31.91	31.308	2	9.3663E-23	28190	160511_QHF_FH_JSI12i_1	205.53	189.92			0.90674	0.96865	19.876	4	0	Median	1.2123	1.0087	NaN	1	0	Median	0.79294	0.9302	NaN	1	0	Median	0.69433	0.69006	NaN	1	0	Median	1.0369	1.0853	NaN	1	0	Median	604420000	298610000	305820000	150140000	64585000	85550000	157700000	86928000	70768000	133870000	63263000	70607000	162720000	83830000	78894000	37473	4989	35278	229799;229800;229801;229802;229803	309307;309308;309309;309310;309311;309312;309313;309314;309315	309310			9	
MTEIQTPENTPR	0	Oxidation (M)	1431.6664	0.6663932	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		31.521	31.286	2	0.0019913	27991	160511_QHF_FH_JSI11i_1	70.1	55.893			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37474	4989	35278	229804	309316	309316		2570	1	
MTELETAMGMIIDVFSR	0	Unmodified	1942.9202	0.9202414	1268	P25815	S100P	Protein S100-P	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.44		6	2	2					6	3	4	6	3	102.42	97.937	2;3	2.1944E-69	56189	160513_QHF_FH_JSI10Kac_6	245.03	220.78			0.87818	0.93164	22.009	12	2	Median	1.3011	1.1229	22.858	2	0	Median	0.65945	0.78305	17.278	3	1	Median	1.0215	1.0003	26.917	4	0	Median	0.72899	0.76946	14.298	3	1	Median	796370000	402340000	394030000	228880000	68214000	160660000	227280000	142220000	85063000	88674000	41855000	46819000	251540000	150050000	101480000	37475	1268	35279	229805;229806;229807;229808;229809;229810;229811;229812;229813;229814;229815;229816;229817;229818;229819;229820	309317;309318;309319;309320;309321;309322;309323;309324;309325;309326;309327;309328;309329;309330;309331;309332;309333;309334;309335;309336	309335			20	
MTELETAMGMIIDVFSR	0	Acetyl (Protein N-term)	1984.9308	0.93080609	1268	P25815	S100P	Protein S100-P	yes	yes	0	1	0	0		By MS/MS		By MS/MS	16	0									2		1		1	106.81	99.228	2	6.8956E-43	59907	160513_QHF_FH_JSI10Kac_6	229.75	209.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37476	1268	35279	229821;229822	309337;309338	309338			2	
MTELYQSLADLNNVR	0	Unmodified	1765.8669	0.86688392	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.608	81.739	2	0.00021064	70668	160511_QHF_FH_JSI12i_2	126.76	63.357			2.0957	2.1679	10.273	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4432	2.3313	NaN	1	1	Median	1.7976	2.016	NaN	1	1	Median	26714000	7616100	19098000	0	0	0	0	0	0	15193000	3024900	12169000	11520000	4591200	6929100	37477	1003	35280	229823;229824	309339;309340	309339			2	
MTEQAISFAK	1	Acetyl (Protein N-term)	1166.5642	0.56415996	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.746	68.178	2	4.5643E-12	60628	160511_QHF_FH_JSI9i_1	87.308	72.634			1.0857	1.0471	8.6579	4	0	Median	1.2238	1.0042	NaN	1	0	Median	0.78935	0.92182	NaN	1	0	Median	1.1345	1.1139	NaN	1	0	Median	1.0389	1.0918	NaN	1	0	Median	590490000	285170000	305310000	122990000	48283000	74707000	148000000	84800000	63203000	173900000	83607000	90289000	145600000	68484000	77113000	37478	1014	35281	229825;229826;229827;229828	309341;309342;309343;309344;309345;309346;309347	309346			6	
MTEQHFPHPIQSFSPESMPEPLNGPINILGEGR	0	Unmodified	3685.7657	0.76573667	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		100.54	100.45	3;4	1.4604E-11	89336	160511_QHF_FH_JSI11i_3	68.269	63.46			1.0813	1.1147	40.195	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2804	1.4812	NaN	1	0	Median	0.9132	0.83894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86711000	36494000	50218000	0	0	0	65734000	26863000	38871000	20977000	9630400	11347000	0	0	0	37479	241	35282	229829;229830	309348;309349	309348			2	
MTEQMTLR	0	Acetyl (Protein N-term)	1050.4838	0.48380115	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	53.133	52.206	2	0.0010145	46418	160511_QHF_FH_JSI9i_1	77.923	56.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37480	2061	35283	229831;229832	309350;309351;309352	309352			3	
MTETPIQEEQASIK	1	Unmodified	1603.7763	0.77633758	3162	Q6VN20	RANBP10	Ran-binding protein 10	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	43.932	43.404	2	0.00050466	39471	160511_QHF_FH_JSI12i_1	93.623	78.933			0.70141	0.75748	19.318	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76522	0.86835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64293	0.66077	NaN	1	1	Median	60169000	35773000	24396000	0	0	0	31167000	19491000	11676000	0	0	0	29002000	16282000	12721000	37481	3162	35284	229833;229834	309353;309354	309353			1	
MTEWETAAPAVAETPDIK	1	Acetyl (Protein N-term)	2000.9401	0.94010844	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	4	2	93.726	93.365	2;3	5.0147E-12	82892	160511_QHF_FH_JSI9i_1	59.607	53.421			1.0259	1.0894	79.519	9	2	Median	1.2548	1.0341	7.3668	2	0	Median	1.0186	1.1859	7.1018	2	0	Median	0.63973	0.611	156.46	3	2	Median	0.85543	0.90485	26.933	2	0	Median	469740000	221980000	247770000	150560000	68433000	82131000	87506000	43031000	44475000	117280000	49928000	67356000	114390000	60587000	53803000	37482	1594	35285	229835;229836;229837;229838;229839;229840;229841;229842;229843;229844	309355;309356;309357;309358;309359;309360;309361;309362;309363;309364;309365;309366;309367;309368;309369	309366			15	
MTFHSQK	1	Unmodified	877.41162	0.41162248	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	7.9946	8.0923	2;3	0.045541	5587	160511_QHF_FH_JSI12i_3	28.174	19.401			0.70635	0.72072	63.981	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70635	0.72072	63.981	2	2	Median	134730000	77387000	57341000	0	0	0	0	0	0	0	0	0	134730000	77387000	57341000	37483	1779	35286	229845;229846	309370;309371	309371			2	
MTFLFANLK	1	Unmodified	1083.5787	0.57868781	3016	Q66K14;Q6ZT07	TBC1D9B;TBC1D9	TBC1 domain family member 9B;TBC1 domain family member 9	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	1	2	3	86.62	82.342	2	1.2275E-05	40712	160513_QHF_FH_JSI12Kac_6	107.9	92.514			0.82156	0.73731	57.596	6	5	Median	0.63335	0.51192	NaN	1	1	Median	0.44835	0.53824	NaN	1	1	Median	1.3905	1.3257	38.471	2	1	Median	0.76009	0.75349	79.823	2	2	Median	348180000	197360000	150810000	18306000	8559100	9746700	123600000	88747000	34854000	107500000	46224000	61273000	98773000	53834000	44940000	37484	3016	35287	229847;229848;229849;229850;229851;229852;229853;229854	309372;309373;309374;309375;309376;309377;309378;309379;309380	309379			9	
MTFTSNK	1	Unmodified	827.38474	0.38473903	99	O00154;Q6ZUV0	ACOT7;ACOT7L	Cytosolic acyl coenzyme A thioester hydrolase;Putative cytosolic acyl coenzyme A thioester hydrolase-like	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	16.619	15.971	2	0.016292	12789	160511_QHF_FH_JSI11i_2	63.301	37.193			1.0851	1.1141	20.052	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2855	1.5723	NaN	1	0	Median	1.0851	1.1141	NaN	1	0	Median	1.0137	1.1079	NaN	1	0	Median	543920000	277270000	266650000	0	0	0	128630000	77807000	50821000	226460000	107420000	119040000	188830000	92042000	96788000	37485	99	35288	229855;229856;229857	309381;309382	309381			2	
MTGGGFGGCTVTLLEASAAPHAMR	0	Unmodified	2391.1134	0.11335533	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								3	1	2	80.066	78.931	3	3.2804E-08	66209	160511_QHF_FH_JSI10i_3	78.975	70.156			0.67293	0.82901	18.353	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.67293	0.82901	18.353	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45686000	25669000	20017000	0	0	0	45686000	25669000	20017000	0	0	0	0	0	0	37486	1739	35289	229858;229859;229860;229861;229862;229863	309383;309384;309385;309386;309387;309388	309385			5	
MTGHQALINQVLFSPDSR	0	Unmodified	2013.0102	0.010194116	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	69.877	68.794	3	1.1023E-05	57731	160511_QHF_FH_JSI10i_3	83.213	67.075			1.3496	1.3469	16.062	3	0	Plateau	1.582	1.2662	NaN	1	0	Median	0.85057	0.99391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3496	1.3469	NaN	1	0	Median	153270000	63719000	89550000	48362000	19412000	28951000	43367000	19900000	23467000	0	0	0	61540000	24407000	37133000	37487	5054	35290	229864;229865;229866	309389;309390	309389			2	
MTGKPEPK	2	Unmodified	886.45824	0.45823833	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.5943	5.6898	3	0.056691	3238	160511_QHF_FH_JSI12i_3	30.254	12.219			0.47789	0.49352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47789	0.49352	NaN	1	1	Median	446830000	199610000	247210000	0	0	0	0	0	0	0	0	0	446830000	199610000	247210000	37488	2970	35291	229867	309391	309391			1	
MTGLVDEAIDTK	1	Unmodified	1291.633	0.63296781	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			2	3	1	1	56.694	54.565	2	1.5489E-05	48324	160511_QHF_FH_JSI9i_1	117.09	88.882			2.3061	2.7174	128.69	7	7	Median	1.1947	0.97388	173.15	2	2	Median	0.29143	0.34138	126.46	3	3	Median	2.9872	2.9439	NaN	1	1	Median	4.0339	4.3061	NaN	1	1	Median	2870200000	1379200000	1491000000	856170000	389890000	466280000	1144400000	717830000	426590000	452060000	159910000	292150000	417510000	111550000	305960000	37489	1139	35292	229868;229869;229870;229871;229872;229873;229874	309392;309393;309394;309395;309396;309397;309398;309399	309398			8	
MTGSEFDFEEMK	1	Unmodified	1449.5792	0.57921768	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	64.066	63.379	2	4.0816E-05	57537	160511_QHF_FH_JSI11i_1	102.53	95.151			0.96611	0.94886	12.805	7	0	Median	1.2641	1.0675	11.919	2	0	Median	0.68026	0.81005	3.2348	2	0	Median	0.96816	0.94617	0.40022	2	0	Median	0.96611	1.0208	NaN	1	0	Median	535860000	284800000	251060000	107940000	50843000	57094000	136210000	83513000	52695000	186900000	97359000	89543000	104820000	53088000	51729000	37490	1702	35293	229875;229876;229877;229878;229879;229880;229881	309400;309401;309402;309403;309404;309405;309406;309407;309408	309400			9	
MTGSEFDFEEMKR	1	Unmodified	1605.6803	0.68032871	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.471	1	7	1							2	1	3	3	54.031	53.207	2;3	1.2527E-05	45940	160511_QHF_FH_JSI11i_2	110.92	87.327			0.88549	0.93689	5.9249	9	2	Median	1.0233	0.86348	3.8442	2	2	Median	0.80225	0.98322	NaN	1	0	Median	0.88549	0.92777	1.846	3	0	Plateau	0.84794	0.94725	7.6036	3	0	Median	4210300000	2156300000	2053900000	741150000	331240000	409920000	1013400000	505470000	507960000	1328400000	734150000	594260000	1127300000	585460000	541800000	37491	1702	35294	229882;229883;229884;229885;229886;229887;229888;229889;229890	309409;309410;309411;309412;309413;309414;309415;309416;309417;309418;309419;309420	309417			12	
MTHNLLLNYGLYR	0	Unmodified	1606.829	0.82898227	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.45		1	9						7	5	3	5	4	70.31	65.919	2;3	2.2242E-76	35734	160513_QHF_FH_JSI10Kac_6	275.84	211.18			1.0594	1.062	24.834	16	5	Median	1.3152	1.1304	30.342	5	3	Median	0.64773	0.74717	27.272	3	1	Median	1.0966	1.0257	15.489	4	0	Median	1.0973	1.1342	18.735	4	1	Median	2849100000	1353000000	1496100000	860990000	330740000	530250000	499790000	332190000	167600000	745100000	324380000	420720000	743220000	365650000	377570000	37492	2438;3882	35295	229891;229892;229893;229894;229895;229896;229897;229898;229899;229900;229901;229902;229903;229904;229905;229906;229907	309421;309422;309423;309424;309425;309426;309427;309428;309429;309430;309431;309432;309433;309434;309435;309436;309437;309438;309439;309440;309441;309442;309443;309444;309445;309446;309447;309448;309449	309449			29	
MTHNLLLNYGLYR	0	Oxidation (M)	1622.8239	0.8238969	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	1	2	2	70.158	62.174	2;3	1.0555E-19	32633	160513_QHF_FH_JSI12Kac_6	147.37	122.15			1.0003	0.92571	15.334	7	4	Median	1.0598	0.88753	5.9563	2	2	Median	0.60925	0.72184	NaN	1	1	Median	1.0576	1.0243	8.2013	2	1	Median	0.91968	0.98145	19.52	2	0	Median	303950000	135620000	168330000	88172000	37396000	50776000	25141000	11723000	13418000	87090000	39865000	47225000	103550000	46636000	56910000	37493	2438;3882	35295	229908;229909;229910;229911;229912;229913;229914	309450;309451;309452;309453;309454;309455;309456;309457	309456		1955	8	
MTHNLLLNYGLYRK	1	Unmodified	1734.9239	0.92394529	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	65.68	56.737	2;3;4	5.2506E-17	29883	160513_QHF_FH_JSI12Kac_6	133.98	116.23			0.93758	1.0289	29.502	10	0	Median	0.88794	0.76932	7.8177	2	0	Median	0.88589	1.0353	37.52	4	0	Median	1.2603	1.2009	10.912	2	0	Median	0.93537	0.99227	6.9696	2	0	Median	1171300000	663530000	507770000	232770000	132520000	100260000	722460000	420430000	302030000	75143000	28672000	46470000	140920000	81904000	59017000	37494	2438;3882	35296	229915;229916;229917;229918;229919;229920;229921;229922;229923;229924	309458;309459;309460;309461;309462;309463;309464;309465;309466;309467;309468	309464			11	
MTHNLLLNYGLYRK	1	Oxidation (M)	1750.9189	0.91885991	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	61.931	52.803	3;4	0.0013741	28941	160513_QHF_FH_JSI10Kac_6	49.31	44.829			0.96989	1.1575	39.523	5	0	Median	0.84784	0.69449	NaN	1	0	Median	1.0951	1.2906	15.168	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7625	0.806	51.192	2	0	Median	188860000	86232000	102630000	16146000	9042000	7104000	124410000	47376000	77034000	0	0	0	48307000	29814000	18494000	37495	2438;3882	35296	229925;229926;229927;229928;229929	309469;309470;309471;309472;309473;309474;309475	309475		1955	6	
MTIAGTTDTPTDVTHHPIPSEEDINFILNEVR	0	Unmodified	3562.725	0.7249773	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	100.91	100.81	4	1.5759E-39	88452	160511_QHF_FH_JSI11i_2	151.41	145.98			1.1759	1.207	12.258	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0474	1.0661	NaN	1	0	Median	1.2032	1.2823	8.5556	2	1	Median	865070000	343850000	521210000	0	0	0	0	0	0	274430000	138320000	136110000	590640000	205540000	385100000	37496	1558	35297	229930;229931;229932	309476;309477;309478	309477			3	
MTIGMLIESMAGK	1	Unmodified	1380.6815	0.68151468	4816	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	101.68	101.6	2	2.4807E-10	88366	160511_QHF_FH_JSI12i_3	147.91	128.64			1.2415	1.1112	10.968	2	0	Median	1.5043	1.2008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0247	1.0282	NaN	1	0	Median	147200000	68965000	78232000	53606000	20668000	32938000	0	0	0	0	0	0	93591000	48296000	45294000	37497	4816	35298	229933;229934;229935	309479;309480	309480			2	
MTILQTYFR	0	Unmodified	1171.606	0.6059652	506	O75348	ATP6V1G1	V-type proton ATPase subunit G 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	77.11	72.633	2	3.0854E-09	36980	160513_QHF_FH_JSI12Kac_6	142.04	114.79			0.81273	0.89114	21.733	6	2	Median	1.302	1.1012	20.134	2	1	Median	0.76353	0.89114	4.7371	2	0	Median	0.77568	0.71896	10.759	2	1	Median	NaN	NaN	NaN	0	0	Median	436140000	223080000	213060000	143320000	63456000	79863000	168030000	88600000	79427000	124790000	71019000	53773000	0	0	0	37498	506	35299	229936;229937;229938;229939;229940;229941;229942	309481;309482;309483;309484;309485;309486	309485			6	
MTIPLLVR	0	Unmodified	941.57321	0.5732085	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	79.941	79.242	2	0.0049614	69562	160511_QHF_FH_JSI11i_2	73.039	60.55			0.96041	0.82703	NaN	1	0	Median	0.96041	0.82703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19881000	11867000	8014500	19881000	11867000	8014500	0	0	0	0	0	0	0	0	0	37499	3355	35300	229943;229944;229945	309487;309488;309489	309489			3	
MTISNMEADMNR	0	Unmodified	1411.5894	0.58940521	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	51.548	50.57	2	8.397E-06	43285	160511_QHF_FH_JSI12i_2	120.09	108.94			1.0648	1.0382	16.887	4	1	Median	1.2671	1.079	NaN	1	0	Median	1.1527	1.4099	NaN	1	1	Median	0.98361	0.97594	NaN	1	0	Median	0.92803	0.99887	NaN	1	0	Median	187260000	94609000	92649000	41048000	19894000	21154000	38726000	16727000	21999000	50568000	25705000	24863000	56916000	32283000	24633000	37500	3276	35301	229946;229947;229948;229949;229950	309490;309491;309492;309493;309494;309495;309496	309491			7	
MTISQQEFGR	0	Unmodified	1195.5656	0.56555694	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.4	1	4						3		1	2	2	3	43.739	39.286	2	3.6232E-34	33891	160511_QHF_FH_JSI11i_2	207.68	148.76			1.0408	1.0785	12.923	8	0	Median	1.1553	0.99553	NaN	1	0	Median	0.89085	1.0785	2.867	2	0	Median	1.1065	1.1076	21.949	2	0	Median	1.1245	1.2444	14.503	3	0	Median	1587500000	783760000	803700000	291330000	142340000	148980000	318360000	152070000	166290000	511940000	260570000	251370000	465840000	228780000	237060000	37501	1842	35302	229951;229952;229953;229954;229955;229956;229957;229958	309497;309498;309499;309500;309501;309502;309503;309504	309502			8	
MTITEFMNHPWIMQSTK	1	Unmodified	2093.9737	0.97367395	1643	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	98.54	98.432	3	1.5336E-05	84738	160511_QHF_FH_JSI12i_3	83.418	77.001			0.9995	0.97275	22.543	4	0	Median	1.7462	1.4738	NaN	1	0	Median	0.81726	0.91345	NaN	1	0	Median	0.99741	0.91707	NaN	1	0	Median	1.0016	1.0318	NaN	1	0	Median	213500000	110680000	102820000	11075000	4135500	6939300	20159000	11244000	8914900	69417000	34785000	34632000	112850000	60516000	52333000	37502	1643	35303	229959;229960;229961;229962	309505;309506;309507;309508;309509;309510;309511	309510			7	
MTLADDVTLDDLIMAK	1	Unmodified	1763.8685	0.86852341	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.45	101.42	3	1.1198E-05	92145	160511_QHF_FH_JSI10i_1	95.428	84.384			1.0384	1.2099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0384	1.2099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51127000	28948000	22179000	0	0	0	51127000	28948000	22179000	0	0	0	0	0	0	37503	1983	35304	229963	309512;309513	309513			2	
MTLADDVTLDDLIMAKDDLSGADIK	2	Acetyl (K);Oxidation (M)	2736.3085	0.30852871	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		86.937	77.614	3	0.0054083	43121	160513_QHF_FH_JSI11Kac_6	52.483	30.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131200000	0	131200000	0	0	0	0	0	0	131200000	0	131200000	0	0	0	37504	1983	35305	229964	309514	309514	2004	1647	1	
MTLADIER	0	Unmodified	947.47462	0.47461667	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	50.544	49.753	2	0.00053249	42936	160511_QHF_FH_JSI11i_2	105.14	73.2			0.93443	1.0097	6.7779	6	0	Median	1.1936	1.0138	NaN	1	0	Median	0.83412	0.99705	5.8668	2	0	Median	1.0307	1.0267	13.651	2	0	Median	0.91609	1.0057	NaN	1	0	Median	866600000	422330000	444270000	117360000	50955000	66402000	262870000	158740000	104130000	305000000	127730000	177270000	181370000	84897000	96475000	37505	5345	35306	229965;229966;229967;229968;229969;229970	309515;309516;309517;309518;309519;309520	309519			6	
MTLDTLSIYETPSMGLLDKK	2	Unmodified	2255.1429	0.14290735	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	97.918	97.739	3	9.9346E-15	86413	160511_QHF_FH_JSI10i_2	142.98	125.96			1.033	1.1248	15.008	5	2	Median	1.033	0.88372	NaN	1	0	Median	0.9582	1.1869	17.09	2	2	Median	1.105	1.1341	NaN	1	0	Median	1.0171	1.1248	NaN	1	0	Median	457420000	239450000	217970000	85627000	45153000	40474000	174020000	90428000	83592000	96982000	52720000	44261000	100800000	51152000	49644000	37506	1867	35307	229971;229972;229973;229974;229975	309521;309522;309523;309524;309525;309526	309526			6	
MTLEAIR	0	Acetyl (Protein N-term)	874.45824	0.45823833	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.968	64.337	2	0.0075898	58497	160511_QHF_FH_JSI11i_1	49.358	30.553			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37507	4456	35308	229976;229977	309527;309528	309527			2	
MTLLHFIALTVK	1	Unmodified	1385.8105	0.81047866	3406	Q8IVF7	FMNL3	Formin-like protein 3	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	90.387	80.945	3	0.0016054	43553	160513_QHF_FH_JSI12Kac_6	62.891	50.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37508	3406	35309	229978	309529	309529			1	
MTLNMKNYK	2	Acetyl (K)	1183.573	0.57295051	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.738							2	4	7	3	4	3	3	58.501	48.253	2	6.8081E-05	25192	160513_QHF_FH_JSI12Kac_6	103.83	84.739			0.76206	0.79102	31.126	6	0	Median	1.6441	1.3983	NaN	1	0	Median	0.9916	1.1749	NaN	1	0	Median	0.70863	0.69149	9.25	3	0	Median	0.7368	0.81594	NaN	1	0	Median	75902000	48971000	26931000	6715600	1960700	4754900	25971000	19563000	6408200	29200000	16861000	12339000	14015000	10586000	3428900	37509	2579	35310	229979;229980;229981;229982;229983;229984;229985;229986;229987;229988;229989;229990;229991	309530;309531;309532;309533;309534;309535;309536;309537;309538;309539;309540;309541;309542;309543;309544	309541	2551		15	
MTLQLIK	1	Unmodified	845.50446	0.50446024	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.425	57.494	2	0.031809	49637	160511_QHF_FH_JSI11i_2	51.43	6.6633			1.0446	1.0895	13.488	4	0	Median	1.0875	0.91394	NaN	1	0	Median	0.96358	1.1831	NaN	1	0	Median	1.0206	1.0033	NaN	1	0	Median	1.0693	1.2118	NaN	1	0	Median	259340000	135320000	124020000	50139000	23708000	26430000	58675000	35127000	23548000	82406000	39974000	42432000	68118000	36510000	31607000	37510	4914	35311	229992;229993;229994;229995	309545;309546;309547	309545			3	
MTLSNPSELDELMSEEAYEK	1	Unmodified	2315.0185	0.0184947	1228	P23434	GCSH	Glycine cleavage system H protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.15	0.361	11	2								4	3	3	3	92.027	91.633	2;3	2.7048E-237	83210	160511_QHF_FH_JSI10i_1	339.3	330.7			0.97034	0.96887	8.1364	9	1	Median	1.3049	1.0692	0.95849	3	1	Plateau	0.7869	0.91829	7.5829	2	0	Median	0.97386	0.93595	2.0177	2	0	Median	0.91725	0.95431	7.9131	2	0	Median	1262100000	615780000	646320000	138860000	61272000	77590000	366720000	190440000	176280000	484710000	219970000	264740000	271810000	144100000	127710000	37511	1228	35312	229996;229997;229998;229999;230000;230001;230002;230003;230004;230005;230006;230007;230008	309548;309549;309550;309551;309552;309553;309554;309555;309556;309557;309558;309559;309560;309561;309562;309563;309564;309565;309566;309567;309568;309569;309570;309571;309572;309573;309574	309566			27	
MTLVEEGFNPAVIK	1	Unmodified	1546.8065	0.8065155	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	2	1	80.706	80.056	2	4.6758E-30	72582	160511_QHF_FH_JSI10i_1	192.38	183.19			0.98825	0.96963	16.884	8	4	Median	1.1159	0.94174	17.988	3	2	Median	0.79611	0.93823	25.616	2	1	Median	1.073	1.0498	14.663	2	1	Median	1.0082	1.026	NaN	1	0	Median	641610000	351480000	290140000	132940000	66741000	66201000	164990000	101170000	63820000	256720000	139740000	116980000	86964000	43832000	43132000	37512	228	35313	230009;230010;230011;230012;230013;230014;230015;230016	309575;309576;309577;309578;309579;309580;309581;309582;309583;309584;309585;309586	309580			12	
MTMDKSELVQK	2	Acetyl (K);Acetyl (Protein N-term)	1392.6629	0.66288773	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	1	1	0	1		By MS/MS			11	0				1							1			77.061	68.56	2	0.0016156	26989	160513_QHF_FH_JSI10Kac_1	67.563	56.412			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37513	1384	35314	230017	309587	309587	1326		1	
MTMLLLYHSTMSSK	1	Unmodified	1641.7929	0.79285604	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.27			7						12	7	6	3	3	73.717	68.051	2;3	5.3389E-57	35155	160513_QHF_FH_JSI12Kac_6	241.92	198.41			0.86385	0.92347	83.583	18	15	Median	1.248	1.0473	63.379	6	5	Median	0.49021	0.58804	87.001	6	6	Median	1.0595	0.99668	120.21	3	1	Median	0.95599	1.0046	120.52	3	3	Plateau	4865100000	2438600000	2426500000	814100000	461840000	352260000	1765500000	1002600000	762870000	1232800000	442300000	790470000	1052700000	531850000	520890000	37514	2587	35315	230018;230019;230020;230021;230022;230023;230024;230025;230026;230027;230028;230029;230030;230031;230032;230033;230034;230035;230036	309588;309589;309590;309591;309592;309593;309594;309595;309596;309597;309598;309599;309600;309601;309602;309603;309604;309605;309606;309607;309608;309609;309610;309611;309612;309613	309606			26	
MTMLLLYHSTMSSK	1	2 Oxidation (M)	1673.7827	0.78268529	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	4	3	1	6	55.363	45.934	2;3	0.00037981	24723	160513_QHF_FH_JSI10Kac_6	63.681	57.518			1.1854	1.0324	33.113	11	4	Median	1.2736	1.1055	10.408	3	1	Plateau	0.67396	0.79485	36.909	2	1	Median	1.2028	1.1863	NaN	1	0	Median	1.1854	1.2873	40.077	5	2	Median	381320000	185950000	195370000	128720000	64496000	64227000	116950000	59387000	57562000	25046000	10705000	14341000	110600000	51362000	59240000	37515	2587	35315	230037;230038;230039;230040;230041;230042;230043;230044;230045;230046;230047;230048;230049;230050	309614;309615;309616;309617;309618;309619;309620;309621;309622;309623;309624;309625;309626;309627;309628;309629	309627		2037;2038;2039	16	
MTMLLLYHSTMSSK	1	Oxidation (M)	1657.7878	0.78777066	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									30	8	8	5	9	66.734	57.694	2;3	1.7802E-24	32530	160513_QHF_FH_JSI9Kac_6	203.11	167.15			0.92217	1.0032	37.379	25	18	Median	1.0322	0.90118	23.566	6	4	Median	1.0247	1.2225	32.602	7	5	Median	0.94917	0.9333	22.732	4	3	Median	0.77583	0.82405	52.193	8	6	Median	1522300000	771320000	750940000	483560000	211320000	272250000	607700000	319440000	288260000	92256000	50283000	41973000	338730000	190280000	148460000	37516	2587	35315	230051;230052;230053;230054;230055;230056;230057;230058;230059;230060;230061;230062;230063;230064;230065;230066;230067;230068;230069;230070;230071;230072;230073;230074;230075;230076;230077;230078;230079;230080	309630;309631;309632;309633;309634;309635;309636;309637;309638;309639;309640;309641;309642;309643;309644;309645;309646;309647;309648;309649;309650;309651;309652;309653;309654;309655;309656;309657;309658;309659;309660;309661;309662;309663;309664	309644		2037;2038;2039	35	
MTMLLLYHSTMSSK	1	3 Oxidation (M)	1689.7776	0.77759991	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	3	0				By MS/MS	16	0									1				1	46.552	36.95	3	0.023256	19405	160513_QHF_FH_JSI12Kac_6	33.787	27.625			0.38731	0.41926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38731	0.41926	NaN	1	1	Median	11642000	8188400	3453900	0	0	0	0	0	0	0	0	0	11642000	8188400	3453900	37517	2587	35315	230081	309665	309665		2037;2038;2039	1	
MTNGFSGADLTEICQR	0	Unmodified	1798.7978	0.79781808	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	1	3	63.624	62.758	2	9.1501E-81	56931	160511_QHF_FH_JSI10i_1	247.32	232.64			1.0701	1.1474	19.031	7	4	Median	1.3809	1.1727	30.649	2	2	Median	0.9994	1.1646	NaN	1	0	Median	1.0772	1.0417	NaN	1	0	Median	1.4966	1.5728	22.844	3	2	Plateau	870470000	380950000	489520000	108830000	36784000	72043000	155470000	70129000	85346000	302360000	144100000	158260000	303810000	129940000	173870000	37518	1846	35316	230082;230083;230084;230085;230086;230087;230088	309666;309667;309668;309669;309670;309671;309672;309673;309674	309672			9	
MTNHCVFSANEDHETIR	0	Unmodified	2059.884	0.88400732	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		29.267	28.82	3;4	0.00016	24758	160511_QHF_FH_JSI11i_3	58.693	52.53			0.72159	0.66698	67.397	3	1	Median	NaN	NaN	NaN	0	0	Median	1.7044	1.9897	NaN	1	1	Median	0.66744	0.62292	9.6639	2	0	Median	NaN	NaN	NaN	0	0	Median	118020000	70380000	47637000	0	0	0	18007000	6484000	11523000	100010000	63896000	36114000	0	0	0	37519	5722	35317	230089;230090;230091	309675;309676;309677;309678	309676			3	
MTNPAIQNDFSYYR	0	Unmodified	1718.7723	0.77225526	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	61.352	60.577	2	3.6864E-41	51917	160511_QHF_FH_JSI12i_2	210.91	202.81			0.9348	1.0614	16.933	8	0	Median	1.6069	1.3653	16.953	2	0	Median	0.83758	1.0094	7.8924	2	0	Median	0.92388	0.92864	2.1401	2	0	Median	0.98164	1.0614	0.73016	2	0	Median	804780000	398970000	405810000	120540000	48371000	72168000	201570000	120830000	80737000	303520000	140320000	163200000	179150000	89441000	89708000	37520	5015	35318	230092;230093;230094;230095;230096;230097;230098;230099	309679;309680;309681;309682;309683;309684;309685;309686;309687;309688;309689;309690;309691;309692	309681			14	
MTNPAIQNDFSYYRR	0	Unmodified	1874.8734	0.87336628	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			53.527	51.957	3	0.00027672	42641	160511_QHF_FH_JSI9i_3	63.894	51.978			1.1523	1.1116	18.59	2	0	Median	1.5618	1.2678	NaN	1	0	Median	0.85026	0.97467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185210000	80054000	105160000	110930000	43346000	67587000	74276000	36707000	37568000	0	0	0	0	0	0	37521	5015	35319	230100;230101	309693;309694	309694			2	
MTNQYGILFK	1	Acetyl (Protein N-term)	1255.6271	0.62709457	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	88.557	88.118	2	0.00022722	80128	160511_QHF_FH_JSI12i_1	50.607	29.159			0.9267	0.92522	105.45	4	1	Median	9.4151	7.5968	NaN	1	1	Median	0.81841	0.93073	NaN	1	0	Median	0.95881	0.91975	NaN	1	0	Median	0.89566	0.91578	NaN	1	0	Median	102410000	41306000	61100000	20405000	2145500	18259000	24501000	11033000	13468000	31378000	15993000	15385000	26122000	12135000	13988000	37522	4605	35320	230102;230103;230104;230105	309695;309696;309697;309698;309699	309696			5	
MTNTGLPGPATPAYSYAK	1	Unmodified	1838.8873	0.88728501	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.954	56.294	2	0.0034538	51156	160511_QHF_FH_JSI12i_1	53.754	37.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37523	5208	35321	230106	309700	309700			1	
MTNTNLAVVFGPNLLWAK	1	Unmodified	1988.0554	0.055353395	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		95.088	87.528	2;3	1.9232E-05	51110	160513_QHF_FH_JSI10Kac_6	148.68	135.48			1.1249	1.1837	11.467	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94649	1.0915	NaN	1	1	Median	1.337	1.2836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165900000	75315000	90588000	0	0	0	57681000	22715000	34966000	108220000	52599000	55622000	0	0	0	37524	2261	35322	230107;230108	309701;309702	309702			2	
MTNYDVEHTIK	1	Unmodified	1349.6286	0.62855113	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								3	2	2	1	32.766	31.877	2;3	8.8797E-06	27986	160511_QHF_FH_JSI10i_2	125.75	111.98			1.0549	1.1691	24.105	8	5	Median	1.0706	0.96787	29.565	3	2	Median	0.85806	1.0624	27.423	2	2	Median	1.3058	1.3209	16.831	2	1	Median	1.0356	1.1655	NaN	1	0	Median	946430000	411350000	535080000	296180000	130210000	165970000	126700000	71745000	54959000	473460000	179020000	294440000	50076000	30374000	19702000	37525	891	35323	230109;230110;230111;230112;230113;230114;230115;230116	309703;309704;309705;309706;309707;309708;309709;309710	309710			8	
MTNYDVEHTIKK	2	Unmodified	1477.7235	0.72351415	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							3	1	4	6	27.846	27.511	2;3;4	2.8914E-06	23372	160511_QHF_FH_JSI11i_3	96.059	92.872			1.1429	1.0837	66.496	14	13	Median	2.8977	2.4992	53.8	3	3	Plateau	0.61954	0.74904	NaN	1	1	Median	1.0972	1.0259	64.346	4	3	Median	1.4408	1.4932	79.042	6	6	Median	1452000000	734450000	717570000	198460000	85568000	112890000	65270000	33572000	31698000	339740000	176500000	163240000	848560000	438820000	409740000	37526	891	35324	230117;230118;230119;230120;230121;230122;230123;230124;230125;230126;230127;230128;230129;230130	309711;309712;309713;309714;309715;309716;309717;309718;309719;309720;309721;309722;309723;309724;309725	309711			15	
MTPEDYEK	1	Unmodified	1011.4219	0.4219124	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	22.336	22.026	2	0.0071383	19298	160511_QHF_FH_JSI12i_1	60.436	44.292			1.4352	1.1902	17.134	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4352	1.6766	NaN	1	1	Median	1.523	1.415	NaN	1	1	Median	1.1661	1.1902	NaN	1	0	Median	201530000	93082000	108440000	0	0	0	51749000	22042000	29707000	68086000	26628000	41458000	81690000	44412000	37277000	37527	4844	35325	230131;230132;230133	309726;309727;309728	309727			3	
MTPEQLAIK	1	Unmodified	1029.5529	0.55286699	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.716	4	5	2							3	3	3	2	47.501	46.561	2	0.0028657	41202	160511_QHF_FH_JSI9i_1	70.919	55.257			1.0643	1.0839	16.597	11	2	Median	1.3674	1.2014	12.614	3	0	Plateau	0.88327	1.0516	17.854	3	0	Median	1.0549	1.024	27.139	3	2	Median	1.0474	1.1136	3.8203	2	0	Median	1946800000	927300000	1019500000	268260000	121540000	146730000	391590000	219860000	171730000	893880000	383930000	509950000	393080000	201980000	191110000	37528	144	35326	230134;230135;230136;230137;230138;230139;230140;230141;230142;230143;230144	309729;309730;309731;309732;309733;309734;309735;309736;309737;309738;309739;309740;309741;309742;309743;309744;309745;309746;309747	309739			19	
MTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR	1	Unmodified	3388.6722	0.67215387	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			52.278	50.879	4	1.5672E-16	42535	160511_QHF_FH_JSI10i_3	83.559	81.317			0.79018	0.82767	33.092	3	1	Plateau	1.3119	1.0903	41.033	2	1	Median	0.72296	0.82767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121490000	59221000	62270000	73996000	32345000	41651000	47495000	26876000	20619000	0	0	0	0	0	0	37529	2557	35327	230145;230146;230147	309748;309749;309750;309751;309752;309753	309749			6	
MTPHEKQVMMFSATLSK	2	Acetyl (K)	2006.9628	0.96277492	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.796	67.472	3	0.00024076	36811	160513_QHF_FH_JSI11Kac_6	80.975	75.131			0.78919	0.77295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78919	0.77295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41613000	34339000	7273400	0	0	0	0	0	0	41613000	34339000	7273400	0	0	0	37530	2474	35328	230148	309754	309754	2494		1	
MTPSNIAIVLGPNLLWAR	0	Unmodified	1965.087	0.086987874	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.068	90.348	2	0.0012434	52270	160513_QHF_FH_JSI10Kac_6	113.35	89.971			1.0029	1.183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0029	1.183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101890000	60639000	41253000	0	0	0	101890000	60639000	41253000	0	0	0	0	0	0	37531	3029	35329	230149	309755	309755			1	
MTPSYEIR	0	Unmodified	995.47462	0.47461667	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.44	2	3	1				2	4		1	5	4	2	36.618	31.254	2	0.0014339	26719	160511_QHF_FH_JSI11i_2	89.55	66.927			0.92242	0.99083	8.3578	12	2	Median	1.1048	0.93038	NaN	1	0	Median	0.83126	0.97867	5.3018	5	1	Median	1.1202	1.1306	8.4426	4	1	Median	0.92242	1.0268	4.7103	2	0	Median	3403400000	1610400000	1792900000	14718000	6715700	8002300	1180900000	647080000	533830000	1531100000	628910000	902230000	676600000	327730000	348870000	37532	2265	35330	230150;230151;230152;230153;230154;230155;230156;230157;230158;230159;230160;230161	309756;309757;309758;309759;309760;309761;309762;309763;309764;309765;309766;309767;309768;309769;309770	309766			15	
MTPTHKGQR	1	Acetyl (K)	1096.5448	0.54476192	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		8.5108	-0.85252	3	0.04234	3015	160513_QHF_FH_JSI11Kac_6	32.523	22.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37533	486	35331	230162	309771	309771			1	
MTQIMFEAFNTPAMYVAIQAVLSLYASGR	0	2 Oxidation (M)	3254.5814	0.58141329	2865	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	2	0		By MS/MS	By MS/MS		13.5	2.5				2					2		3	1		109.96	101.61	2;3	2.3678E-19	60208	160513_QHF_FH_JSI10Kac_6	107.57	92.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37534	2865	35332	230163;230164;230165;230166	309772;309773;309774;309775	309775		2160;2161	4	
MTQIMFETFNTPAMYVAIQAVLSLYASGR	0	Oxidation (M)	3268.5971	0.59706335	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	2.21				21	7	5	4		24	9	23	28	1	108.83	100.61	3	2.8758E-29	60507	160513_QHF_FH_JSI10Kac_6	131.5	118.25			1.1837	1.284	40.19	36	19	Median	1.2462	1.0625	24.297	5	2	Median	1.1881	1.3922	26.425	15	8	Median	1.1583	1.1072	48.623	16	9	Median	NaN	NaN	NaN	0	0	Median	792510000	356620000	435890000	76228000	37756000	38472000	645650000	284040000	361610000	70627000	34820000	35807000	0	0	0	37535	1916;2062	35333	230167;230168;230169;230170;230171;230172;230173;230174;230175;230176;230177;230178;230179;230180;230181;230182;230183;230184;230185;230186;230187;230188;230189;230190;230191;230192;230193;230194;230195;230196;230197;230198;230199;230200;230201;230202;230203;230204;230205;230206;230207;230208;230209;230210;230211;230212;230213;230214;230215;230216;230217;230218;230219;230220;230221;230222;230223;230224;230225;230226;230227	309776;309777;309778;309779;309780;309781;309782;309783;309784;309785;309786;309787;309788;309789;309790;309791;309792;309793;309794;309795;309796;309797;309798;309799;309800;309801;309802;309803;309804;309805;309806;309807;309808;309809;309810;309811;309812;309813;309814;309815;309816;309817;309818;309819;309820;309821;309822;309823;309824;309825;309826;309827;309828;309829;309830;309831;309832;309833;309834;309835;309836;309837;309838;309839	309831		1581;1582;1583	63	
MTQIMFETFNTPAMYVAIQAVLSLYASGR	0	Unmodified	3252.6021	0.60214873	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	2.75		1	1	30	11	5	4	1	30	13	30	39	1	108.38	100.32	2;3;4	2.1344E-84	61077	160513_QHF_FH_JSI10Kac_6	203.94	197.72			1.1633	1.2068	21.482	51	18	Median	1.2413	1.0577	19.711	10	5	Median	1.0863	1.2933	19.202	22	7	Median	1.2043	1.1768	15.506	18	6	Median	0.94637	1.0278	NaN	1	0	Median	1432100000	679520000	752590000	237270000	116900000	120370000	1055800000	500250000	555560000	135700000	60481000	75223000	3324500	1890000	1434600	37536	1916;2062	35333	230228;230229;230230;230231;230232;230233;230234;230235;230236;230237;230238;230239;230240;230241;230242;230243;230244;230245;230246;230247;230248;230249;230250;230251;230252;230253;230254;230255;230256;230257;230258;230259;230260;230261;230262;230263;230264;230265;230266;230267;230268;230269;230270;230271;230272;230273;230274;230275;230276;230277;230278;230279;230280;230281;230282;230283;230284;230285;230286;230287;230288;230289;230290;230291;230292;230293;230294;230295;230296;230297;230298;230299;230300;230301;230302;230303;230304;230305;230306;230307;230308;230309;230310	309840;309841;309842;309843;309844;309845;309846;309847;309848;309849;309850;309851;309852;309853;309854;309855;309856;309857;309858;309859;309860;309861;309862;309863;309864;309865;309866;309867;309868;309869;309870;309871;309872;309873;309874;309875;309876;309877;309878;309879;309880;309881;309882;309883;309884;309885;309886;309887;309888;309889;309890;309891;309892;309893;309894;309895;309896;309897;309898;309899;309900;309901;309902;309903;309904;309905;309906;309907;309908;309909;309910;309911;309912;309913;309914;309915;309916;309917;309918;309919;309920;309921;309922;309923;309924;309925;309926;309927;309928;309929	309922			88	
MTQIMFETFNTPAMYVAIQAVLSLYASGR	0	2 Oxidation (M)	3284.592	0.59197798	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	2	0		By MS/MS	By MS/MS		12.2	1.62				4	3		1		1		1	8		103.58	94.447	3	2.7574E-06	60060	160513_QHF_FH_JSI10Kac_6	59.971	53.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1015500	0	1015500	0	0	0	0	0	0	1015500	0	1015500	0	0	0	37537	1916;2062	35333	230311;230312;230313;230314;230315;230316;230317;230318;230319	309930;309931;309932;309933;309934;309935;309936;309937;309938	309938		1581;1582;1583	9	
MTQIMFETFNTPAMYVAIQAVLSLYASGR	0	3 Oxidation (M)	3300.5869	0.5868926	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	3	0		By MS/MS			13	0						1					1			102.6	93.601	3	0.00012372	41910	160513_QHF_FH_JSI10Kac_3	71.528	65.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1044700	0	1044700	0	0	0	1044700	0	1044700	0	0	0	0	0	0	37538	1916;2062	35333	230320	309939	309939		1581;1582;1583	1	
MTQIMFETFNVPAMYVAIQAVLSLYASGR	0	Oxidation (M)	3266.6178	0.6177988	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	1	0			By MS/MS	By MS/MS	13	0						2						1	1	104.27	95.459	3	0.020584	43262	160513_QHF_FH_JSI12Kac_3	37.054	30.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	471890	0	471890	0	0	0	0	0	0	0	0	0	471890	0	471890	37539	2015;2070	35334	230321;230322	309940;309941	309941		1673;1674;1675	2	
MTQIMFETFNVPAMYVAIQAVLSLYASGR	0	2 Oxidation (M)	3282.6127	0.61271342	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	2.33				3		1			4	2	2	3	1	109.94	101.67	3	0.00027636	36748	160513_QHF_FH_JSI11Kac_1	52.685	43.141			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37540	2015;2070	35334	230323;230324;230325;230326;230327;230328;230329;230330	309942;309943;309944;309945;309946;309947;309948;309949	309945		1673;1674;1675	8	
MTQLVLPGMVER	0	Unmodified	1372.7207	0.72067738	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		74.165	73.43	2	0.00012115	65298	160511_QHF_FH_JSI10i_2	85.958	68.933			0.98938	1.1908	18.13	3	1	Plateau	1.959	1.6696	NaN	1	0	Median	0.98938	1.1908	NaN	1	0	Median	1.2555	1.2584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	296220000	127360000	168860000	60158000	15854000	44304000	92651000	48398000	44253000	143420000	63109000	80307000	0	0	0	37541	2854	35335	230331;230332;230333	309950;309951;309952	309952			3	
MTQNDSQLQPIQYQYQDNIK	1	Unmodified	2454.1485	0.14853809	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.316	59.662	3	8.7394E-05	54259	160511_QHF_FH_JSI12i_1	63.447	53.048			0.37004	0.3781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37004	0.3781	NaN	1	1	Median	31570000	17098000	14472000	0	0	0	0	0	0	0	0	0	31570000	17098000	14472000	37542	662	35336	230334;230335	309953;309954	309953			2	
MTQNPNYYNLQGISHR	0	Unmodified	1934.9057	0.90572904	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.75	5.93		4	2						2	3	3	1	1	47.072	44.354	2;3	7.8991E-16	36989	160511_QHF_FH_JSI10i_3	162.41	157.6			1.1106	1.3365	30.221	6	2	Median	2.2186	1.8905	13.941	2	1	Median	1.1106	1.3365	1.6388	2	1	Median	0.98482	0.95629	NaN	1	0	Median	0.87169	0.99832	NaN	1	0	Median	623830000	299590000	324230000	61810000	23311000	38498000	486410000	229080000	257340000	8314500	5057600	3256800	67294000	42150000	25144000	37543	552	35337	230336;230337;230338;230339;230340;230341;230342;230343	309955;309956;309957;309958;309959;309960;309961;309962;309963;309964	309957			10	
MTQNPNYYNLQGISHR	0	Oxidation (M)	1950.9006	0.90064367	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	40.338	40.142	3	0.033508	34274	160511_QHF_FH_JSI12i_3	32.181	26.521			1.2284	1.2815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2284	1.2815	NaN	1	0	Median	49091000	21547000	27545000	0	0	0	0	0	0	0	0	0	49091000	21547000	27545000	37544	552	35337	230344	309965	309965			0	
MTQQQENPK	1	Unmodified	1102.5077	0.50770771	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	5.8093	3.1817	2	2.699E-31	3332	160511_QHF_FH_JSI12i_1	199.89	129.89			0.95511	1.0547	17.205	6	1	Median	0.96994	0.79935	NaN	1	0	Median	0.928	1.0954	NaN	1	0	Median	1.2882	1.2394	11.127	2	1	Median	0.92921	1.0032	1.7143	2	0	Median	822110000	400730000	421390000	169060000	87342000	81722000	257590000	132740000	124840000	169910000	69027000	100880000	225560000	111620000	113940000	37545	2344	35338	230345;230346;230347;230348;230349;230350	309966;309967;309968;309969	309967			4	
MTSGDVLSNRK	1	Unmodified	1206.6027	0.60267073	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		17.949	17.949	2	0.0052186	15008	160511_QHF_FH_JSI11i_3	53.756	25.582			0.60952	0.57567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60952	0.57567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65628000	32460000	33168000	0	0	0	0	0	0	65628000	32460000	33168000	0	0	0	37546	5097	35339	230351	309970	309970			1	
MTSGSWTETHAVNAPTYK	1	Unmodified	1979.9047	0.90472599	2646	Q15262	PTPRK	Receptor-type tyrosine-protein phosphatase kappa	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.863	42.747	3	5.6708E-07	37610	160511_QHF_FH_JSI11i_3	98.796	88.6			1.3031	1.2789	18.015	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2024	1.126	NaN	1	0	Median	1.4122	1.4527	NaN	1	0	Median	91946000	46162000	45784000	0	0	0	0	0	0	45363000	24062000	21301000	46583000	22101000	24482000	37547	2646	35340	230352;230353	309971;309972	309971			2	
MTSGVTGDWK	1	Unmodified	1080.491	0.49099502	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	32.714	31.812	2	0.0003863	27076	160511_QHF_FH_JSI12i_2	76.17	63.211			0.94466	1.0907	116.43	6	4	Median	7.2892	6.1929	NaN	1	1	Median	0.81314	0.98342	NaN	1	0	Median	1.2986	1.2822	134.07	2	2	Median	0.52042	0.57008	106.41	2	1	Median	327220000	160890000	166330000	29735000	6180200	23555000	55660000	29803000	25857000	149580000	71225000	78356000	92245000	53681000	38564000	37548	1306	35341	230354;230355;230356;230357;230358;230359	309973;309974;309975;309976;309977;309978;309979	309973			7	
MTSLSSCFAQLCHK	1	Unmodified	1668.7422	0.74221746	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.409	58.88	3	0.00079173	49246	160511_QHF_FH_JSI10i_3	55.899	51.798			0.94759	1.1165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94759	1.1165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15192000	8894500	6297900	0	0	0	15192000	8894500	6297900	0	0	0	0	0	0	37549	4870	35342	230360	309980;309981	309980			2	
MTSMTQSLR	0	Acetyl (Protein N-term)	1095.5053	0.50526487	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	1	0	0	By MS/MS		By MS/MS		1	0	2									1		1		56.397	55.614	2	0.0029336	49464	160511_QHF_FH_JSI9i_1	59.368	55.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37550	4905	35343	230361;230362	309982;309983	309983			2	
MTSTPETLLEEIEAK	1	Unmodified	1690.8335	0.83351811	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.315	93.918	2	0.00010335	82608	160511_QHF_FH_JSI11i_2	103.44	86.769			1.0915	1.0606	11.591	4	0	Median	1.1552	0.95984	NaN	1	0	Median	0.79538	0.99861	NaN	1	0	Median	1.1888	1.2376	NaN	1	0	Median	1.0313	1.1264	NaN	1	0	Median	133790000	75649000	58143000	25433000	12133000	13300000	40668000	27514000	13154000	36653000	19623000	17030000	31038000	16379000	14659000	37551	4565	35344	230363;230364;230365;230366	309984;309985;309986;309987;309988;309989	309988			6	
MTTETASEDDNFGTAQSNK	1	Unmodified	2045.8484	0.8483929	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	30.398	29.799	2;3	6.5131E-118	26488	160511_QHF_FH_JSI10i_1	335.77	327.86			1.0979	1.0811	17.625	8	0	Median	1.2752	1.0522	2.4615	2	0	Median	1.0711	1.2419	18.246	2	0	Median	0.9835	0.95114	25.196	2	0	Median	0.93902	0.96692	17.498	2	0	Median	867150000	425630000	441520000	187090000	76134000	110950000	249830000	141900000	107930000	192810000	93722000	99083000	237430000	113870000	123550000	37552	3860	35345	230367;230368;230369;230370;230371;230372;230373;230374	309990;309991;309992;309993;309994;309995;309996;309997;309998;309999;310000;310001;310002;310003	309997			14	
MTTQSPLNQSSMNAMGSLSVLSPDR	0	Unmodified	2651.2353	0.23532096	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	89.169	88.58	3	2.63E-11	77926	160511_QHF_FH_JSI11i_2	92.275	89.177			1.174	1.3254	8.6654	4	1	Median	1.7686	1.4702	NaN	1	0	Median	1.1134	1.3214	NaN	1	1	Median	1.1306	1.1892	NaN	1	0	Median	1.2191	1.3295	NaN	1	0	Median	106700000	43504000	63198000	34782000	12015000	22767000	15550000	7479200	8070900	37727000	15780000	21948000	18642000	8229700	10412000	37553	3860	35346	230375;230376;230377;230378;230379	310004;310005;310006;310007;310008;310009	310008			6	
MTTSTDHLK	1	Unmodified	1032.491	0.49099502	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			10.358	9.831	2	0.04274	7774	160511_QHF_FH_JSI10i_2	45.68	19.786			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10718000	10718000	0	0	0	0	10718000	10718000	0	0	0	0	0	0	0	37554	1873	35347	230380	310010	310010			1	
MTTTSSVEGK	1	Unmodified	1039.4856	0.48557529	763	P00374;Q86XF0	DHFR;DHFRL1	Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial	yes	no	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.984	10.6	2	2.2527E-07	8310	160511_QHF_FH_JSI11i_1	115.86	100.42			0.97826	0.94564	11.214	4	0	Median	1.2002	0.97597	NaN	1	0	Median	0.76423	0.91625	NaN	1	0	Median	0.9021	0.8788	NaN	1	0	Median	1.0608	1.1351	NaN	1	0	Median	1110800000	545950000	564810000	292630000	125210000	167430000	293510000	143470000	150040000	261400000	143350000	118050000	263220000	133920000	129300000	37555	763	35348	230381;230382;230383;230384	310011;310012	310011			2	
MTTTSSVEGK	1	Oxidation (M)	1055.4805	0.48048991	763	P00374;Q86XF0	DHFR;DHFRL1	Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial	yes	no	0	0	1	0			By MS/MS		13	0						1						1		7.4635	0.14627	2	0.023314	2907	160513_QHF_FH_JSI11Kac_3	44.318	35.785			0.84286	0.82542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84286	0.82542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3796000	2071500	1724500	0	0	0	0	0	0	3796000	2071500	1724500	0	0	0	37556	763	35348	230385	310013;310014	310014			2	
MTVAHMWFDNQIHEADTTENQSGVSFDK	1	Unmodified	3237.4132	0.41316199	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	77.457	70.732	4	8.4098E-117	38693	160513_QHF_FH_JSI10Kac_6	240.46	198.35			0.97928	0.93571	17.967	5	0	Median	1.5332	1.3199	NaN	1	0	Median	0.69217	0.83625	NaN	1	0	Median	0.99559	0.9057	4.6089	2	0	Median	0.87689	0.94426	NaN	1	0	Median	498530000	243560000	254980000	86597000	19837000	66760000	273720000	145660000	128060000	109040000	62765000	46279000	29175000	15295000	13880000	37557	821	35349	230386;230387;230388;230389;230390	310015;310016;310017;310018;310019;310020;310021;310022;310023;310024	310023			10	
MTVDESGQLISCSMDDTVR	0	Unmodified	2142.9232	0.92315453	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	71.128	70.719	2	1.7384E-32	64098	160511_QHF_FH_JSI10i_1	190.87	178.11			1.5993	1.7264	53.819	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0221	1.18	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5025	2.5259	NaN	1	1	Median	53511000	26778000	26733000	0	0	0	35762000	21541000	14221000	0	0	0	17749000	5236200	12512000	37558	472	35350	230391;230392	310025;310026;310027	310026			3	
MTVLFVYNGPHMLEPNTWNLK	1	Unmodified	2503.2392	0.23920777	3453	Q8IY18	SMC5	Structural maintenance of chromosomes protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		90.686	83.145	3	6.7507E-38	47926	160513_QHF_FH_JSI10Kac_6	173.09	133.57			0.81916	0.87374	26.006	2	0	Median	NaN	NaN	NaN	0	0	Median	0.62784	0.72698	NaN	1	0	Median	1.0688	1.0501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98340000	50020000	48320000	0	0	0	54894000	34617000	20276000	43446000	15402000	28044000	0	0	0	37559	3453	35351	230393;230394	310028;310029	310029			2	
MTVNNLHPR	0	Unmodified	1080.5498	0.5498473	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	19.017	18.635	3	0.0077611	15052	160511_QHF_FH_JSI12i_3	32.731	30.686			0.94631	0.94882	18.337	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81506	0.92839	NaN	1	0	Median	1.3504	1.2887	NaN	1	0	Median	0.94631	0.94882	NaN	1	0	Median	316100000	150340000	165760000	0	0	0	109800000	47912000	61887000	82267000	36435000	45832000	124030000	65992000	58041000	37560	4538	35352	230395;230396;230397	310030	310030			1	
MTVVQAYIGGIHYR	0	Unmodified	1606.829	0.82898227	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	3	2	1	74.639	67.192	2;3	1.6976E-12	36973	160513_QHF_FH_JSI10Kac_6	132.06	119.5			1.1587	1.1015	45.833	6	3	Median	1.3119	1.1164	NaN	1	0	Median	0.57093	0.66528	60.807	2	1	Median	1.5957	1.5048	4.0912	2	2	Median	1.0235	1.0868	NaN	1	0	Median	521740000	267050000	254690000	98465000	44119000	54346000	247980000	142080000	105910000	121080000	54093000	66988000	54205000	26762000	27443000	37561	1239	35353	230398;230399;230400;230401;230402;230403;230404;230405	310031;310032;310033;310034;310035;310036;310037;310038;310039;310040;310041	310040			11	
MTVVQAYIGGIHYR	0	Oxidation (M)	1622.8239	0.8238969	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	69.064	59.253	3	0.027804	31065	160513_QHF_FH_JSI12Kac_6	33.751	14.428			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37562	1239	35353	230406	310042	310042			1	
MTVVQAYINEK	1	Unmodified	1294.6591	0.65912298	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	4.69		1						4	2	2	2	2	1	63.697	54.885	2	7.3328E-14	29050	160513_QHF_FH_JSI9Kac_6	156.48	136.72			0.54173	0.56842	22.114	6	1	Median	0.49902	0.42835	28.68	2	1	Median	0.48092	0.57592	6.86	2	0	Median	0.59606	0.58891	NaN	1	0	Median	0.58196	0.65118	NaN	1	0	Median	101800000	57712000	44084000	20502000	13507000	6995600	71583000	38364000	33219000	4707400	2632600	2074800	5002800	3209100	1793700	37563	1168	35354	230407;230408;230409;230410;230411;230412;230413	310043;310044;310045;310046;310047;310048;310049	310049			6	
MTVVVLQK	1	Unmodified	916.54157	0.54157402	4732	Q9H582	ZNF644	Zinc finger protein 644	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	57.459	46.764	2	0.0061288	25710	160513_QHF_FH_JSI11Kac_5	75.854	46.047			1.1118	1.1913	9.22	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97706	1.1687	11.167	2	0	Median	1.176	1.1221	NaN	1	0	Median	1.2144	1.308	NaN	1	0	Median	18413000	9740100	8672700	0	0	0	9867700	5777800	4089900	6722300	3151000	3571200	1822800	811260	1011500	37564	4732	35355	230414;230415;230416;230417	310050;310051	310051			2	
MTYQSIAIVFGPTLLKPEK	2	Unmodified	2135.17	0.1700488	3431	Q8IWW6	ARHGAP12	Rho GTPase-activating protein 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	90.07	82.111	3	1.3441E-18	47390	160513_QHF_FH_JSI10Kac_6	144.01	134.59			1.0127	1.0647	30.549	3	0	Median	1.5481	1.3348	NaN	1	0	Median	0.61799	0.72917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0127	1.0647	NaN	1	0	Median	138110000	74400000	63709000	38631000	16898000	21734000	67449000	40047000	27403000	0	0	0	32029000	17456000	14573000	37565	3431	35356	230418;230419;230420	310052;310053	310053			2	
MVAAAKYAR	1	Acetyl (K)	1021.5379	0.53788563	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.3	0.745							1	2	3		3	2	1	35.054	25.771	2	0.00013126	14386	160513_QHF_FH_JSI11Kac_6	114.78	87.821			0.47116	0.48684	96.001	5	1	Median	NaN	NaN	NaN	0	0	Median	0.32389	0.38115	188.4	2	1	Median	0.40542	0.40101	27.426	2	0	Median	0.47116	0.51306	NaN	1	0	Median	58268000	44576000	13693000	0	0	0	10072000	8210300	1862000	44296000	33652000	10643000	3900400	2713000	1187400	37566	1454	35357	230421;230422;230423;230424;230425;230426	310054;310055;310056;310057;310058;310059	310054	1432		6	
MVAAAKYAR	1	Acetyl (K);Oxidation (M)	1037.5328	0.53280025	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		27.292	17.801	2	0.04829	11440	160513_QHF_FH_JSI11Kac_5	49.097	38.629			0.50026	0.48067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50026	0.48067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2151000	1753500	397540	0	0	0	0	0	0	2151000	1753500	397540	0	0	0	37567	1454	35357	230427	310060	310060	1432		1	
MVAAATNNLCEAANAAVQGHASQEK	1	Unmodified	2555.1857	0.18566865	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	56.302	55.586	3	4.6843E-33	49378	160511_QHF_FH_JSI11i_3	177.22	169.07			0.72898	0.72978	48.112	9	9	Median	0.90787	0.75934	35.316	2	2	Median	0.91306	1.1251	74.918	2	2	Median	0.56397	0.53488	46.059	3	3	Plateau	1.0747	1.1155	60.013	2	2	Median	545040000	284280000	260760000	75821000	36525000	39296000	118120000	55840000	62282000	226080000	132790000	93290000	125020000	59124000	65891000	37568	5616	35358	230428;230429;230430;230431;230432;230433;230434;230435;230436;230437;230438	310061;310062;310063;310064;310065;310066;310067;310068;310069;310070;310071;310072;310073	310061			13	
MVAAVACAQVPK	1	Unmodified	1243.6417	0.64169877	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.272	41.351	2	7.5835E-10	35412	160511_QHF_FH_JSI12i_2	122.52	100.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37569	4852	35359	230439;230440	310074;310075	310074			2	
MVADLVENSYSISVPIFK	1	Unmodified	2011.0336	0.033614899	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	101.28	101.16	3	0.00015524	89707	160511_QHF_FH_JSI10i_2	73.464	60.523			0.9396	0.95766	26.043	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.60989	0.7649	NaN	1	1	Median	0.9396	0.95766	NaN	1	1	Median	0.51188	0.56974	NaN	1	1	Median	369210000	224990000	144220000	0	0	0	97272000	64082000	33189000	182500000	97477000	85018000	89446000	63434000	26012000	37570	2147	35360	230441;230442;230443	310076;310077;310078	310078			3	
MVAGANFYIVGR	0	Unmodified	1296.6649	0.66487706	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		72.396	63.889	2	7.6086E-08	35164	160513_QHF_FH_JSI10Kac_6	107.69	96.203			0.76254	0.88219	14.151	3	1	Plateau	0.88801	0.75834	NaN	1	0	Median	0.76254	0.88219	NaN	1	0	Median	1.0384	1.0062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95505000	50664000	44840000	17861000	8891000	8970400	55815000	31003000	24812000	21828000	10770000	11058000	0	0	0	37571	315	35361	230444;230445;230446	310079;310080;310081	310080			3	
MVAGANFYIVGRDPAGMPHPETGK	1	Unmodified	2514.2148	0.21478394	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		6.25	5.63			3						1	1	2	1		67.717	65.086	4	0.00058228	35276	160513_QHF_FH_JSI10Kac_6	56.95	48.662			0.87186	0.9516	25.875	4	1	Median	1.7777	1.4692	NaN	1	1	Median	0.81708	0.9516	7.5981	2	0	Median	0.8549	0.81151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144430000	72911000	71516000	21140000	7574700	13565000	66619000	34246000	32373000	56668000	31090000	25578000	0	0	0	37572	315	35362	230447;230448;230449;230450	310082;310083;310084;310085	310084			4	
MVALKGIK	2	Acetyl (K)	900.54666	0.5466594	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.786							2	3	4	1	2	3	3	57.917	47.789	2	0.0015973	25738	160513_QHF_FH_JSI11Kac_6	102.72	46.708			0.98166	1.034	24.029	9	0	Median	0.98166	0.85021	NaN	1	0	Median	0.87357	1.0266	1.0149	2	0	Median	1.1574	1.1296	6.9608	3	0	Median	0.85239	0.92819	43.13	3	0	Median	354390000	181580000	172810000	46896000	18987000	27909000	81035000	45710000	35325000	122550000	63313000	59240000	103900000	53573000	50332000	37573	190	35363	230451;230452;230453;230454;230455;230456;230457;230458;230459	310086;310087;310088;310089;310090;310091;310092;310093;310094;310095;310096;310097	310086	103		12	
MVALKGIK	2	Acetyl (K);Oxidation (M)	916.54157	0.54157402	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.452							5	2			3	1	3	48.97	38.614	2	0.0070202	22494	160513_QHF_FH_JSI12Kac_4	68.422	21.355			1.1589	1.2882	48.315	6	2	Median	NaN	NaN	NaN	0	0	Median	1.3196	1.5571	28.858	2	1	Median	3.5038	3.427	NaN	1	1	Median	1.1189	1.21	23.478	3	0	Median	42212000	19718000	22494000	0	0	0	12833000	7211900	5621100	6105400	1246800	4858600	23274000	11259000	12014000	37574	190	35363	230460;230461;230462;230463;230464;230465;230466	310098;310099;310100;310101;310102;310103;310104;310105;310106	310103	103	76	9	
MVAPPAEPTR	0	Unmodified	1067.5434	0.54336494	3317	Q86U70;O43679	LDB1;LDB2	LIM domain-binding protein 1;LIM domain-binding protein 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.142	25.799	2	0.010134	22988	160511_QHF_FH_JSI12i_1	57.859	23.051			0.17434	0.18435	32.065	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.19201	0.22599	NaN	1	1	Median	0.15306	0.15039	NaN	1	1	Median	0.11462	0.12004	NaN	1	1	Median	526010000	443370000	82640000	0	0	0	172020000	140820000	31197000	191830000	161410000	30423000	162170000	141150000	21019000	37575	3317	35364	230467;230468;230469	310107;310108;310109	310108			3	
MVATTKPK	2	Unmodified	874.49462	0.49462383	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.71	4.62		1	5						1		2	3	2	7.084	5.6362	3	0.0055617	4906	160511_QHF_FH_JSI10i_2	58.981	27.691			0.45558	0.43782	132.5	7	7	Median	NaN	NaN	NaN	0	0	Median	0.99235	1.1851	228.15	2	2	Median	1.2177	1.1723	123.55	3	3	Plateau	0.89631	0.90875	142.92	2	2	Median	3418000000	1652100000	1765900000	0	0	0	324910000	160200000	164700000	939240000	400910000	538330000	2153900000	1091000000	1062900000	37576	2586	35365	230470;230471;230472;230473;230474;230475;230476	310110;310111;310112;310113;310114;310115;310116	310114			7	
MVATTKPK	2	Acetyl (K);Oxidation (M)	932.5001	0.50010314	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					4	8					4	3	5	17.732	10.51	2	0.0093122	7072	160513_QHF_FH_JSI10Kac_3	62.546	30.191			0.98216	1.0859	231.38	10	6	Median	NaN	NaN	NaN	0	0	Median	0.89736	1.062	204.19	3	2	Median	2.9548	2.8904	131.45	2	1	Median	0.91285	1.006	280.43	5	3	Median	100090000	58551000	41537000	0	0	0	20864000	14755000	6109000	31998000	18123000	13875000	47226000	25673000	21553000	37577	2586	35365	230477;230478;230479;230480;230481;230482;230483;230484;230485;230486;230487;230488	310117;310118;310119;310120;310121;310122;310123;310124;310125;310126;310127;310128;310129;310130;310131;310132	310128	2566	2035	16	
MVATTKPK	2	Acetyl (K)	916.50519	0.50518852	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0.632					1	3	1				2	1	2	24.297	16.883	2	0.0039104	10283	160513_QHF_FH_JSI12Kac_3	89.752	43.089			0.7915	0.80027	14.177	5	0	Median	NaN	NaN	NaN	0	0	Median	0.72197	0.85471	10.576	2	0	Median	0.80208	0.79447	NaN	1	0	Median	0.85289	0.93665	22.255	2	0	Median	160770000	83088000	77681000	0	0	0	48290000	25579000	22711000	28697000	14149000	14548000	83783000	43360000	40422000	37578	2586	35365	230489;230490;230491;230492;230493	310133;310134;310135;310136;310137;310138;310139	310135	2566		7	
MVAYLQDSALDDERLASK	1	Unmodified	2023.9885	0.98845562	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			64.076	63.233	3	0.0017645	55968	160511_QHF_FH_JSI10i_2	53.773	44.954			2.4223	2.9461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4223	2.9461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72930000	27674000	45256000	0	0	0	72930000	27674000	45256000	0	0	0	0	0	0	37579	3172	35366	230494	310140	310140			1	
MVDFAGVK	1	Unmodified	865.43677	0.4367746	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.67	0.471	2	4								1	2	2	1	42.809	42.035	2	0.0030879	36092	160511_QHF_FH_JSI11i_2	75.189	65.44			0.80915	0.80555	16.003	6	0	Median	0.91758	0.79042	NaN	1	0	Median	0.73394	0.88732	13.338	2	0	Median	0.91006	0.91146	17.802	2	0	Median	0.6002	0.66353	NaN	1	0	Median	1866400000	949980000	916450000	352840000	156950000	195890000	460720000	238510000	222210000	669980000	352790000	317180000	382880000	201710000	181170000	37580	1199	35367	230495;230496;230497;230498;230499;230500	310141;310142;310143;310144	310143			4	
MVDLTQVMDDEVFMAFASYATIILSK	1	Unmodified	2937.4214	0.4213904	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.72	100	3	8.3766E-06	59273	160513_QHF_FH_JSI10Kac_6	64.383	54.924			1.5227	1.7867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5227	1.7867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62016000	23901000	38114000	0	0	0	62016000	23901000	38114000	0	0	0	0	0	0	37581	976	35368	230501	310145	310145			0	
MVDPEKPQLGMIDR	1	Unmodified	1627.8062	0.80619792	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		10	5							2	4	4	5	52.947	52.14	2;3	0.00016685	46209	160511_QHF_FH_JSI11i_3	75.764	64.91			1.0623	0.95055	21.959	15	4	Median	1.1145	0.94242	3.7413	2	0	Median	0.96009	1.1415	38.028	4	2	Median	0.98352	0.96087	16.241	4	0	Median	0.94064	0.95055	17.965	5	2	Median	4940100000	2615500000	2324600000	742640000	340210000	402430000	875030000	462840000	412190000	1903300000	967700000	935560000	1419200000	844780000	574370000	37582	939	35369	230502;230503;230504;230505;230506;230507;230508;230509;230510;230511;230512;230513;230514;230515;230516	310146;310147;310148;310149;310150;310151;310152;310153;310154;310155;310156;310157;310158;310159;310160;310161;310162;310163;310164;310165;310166;310167;310168;310169;310170;310171;310172;310173;310174;310175;310176	310149			31	
MVDPEKPQLGMIDR	1	Oxidation (M)	1643.8011	0.80111254	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	1	1		By matching	By matching	By MS/MS	2.5	0.5		2	2								1	1	2	44.667	44.187	3	0.0016959	36984	160511_QHF_FH_JSI12i_3	60.628	51.807			1.1958	1.1331	17.766	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.60209	0.74555	NaN	1	0	Median	0.76997	0.75236	NaN	1	0	Median	0.9809	0.99857	10.91	2	0	Median	268710000	137340000	131370000	0	0	0	48630000	27667000	20963000	49127000	23560000	25567000	170960000	86113000	84845000	37583	939	35369	230517;230518;230519;230520	310177;310178;310179;310180	310178		514;515	4	
MVDQLFCK	1	Unmodified	1039.4831	0.48307287	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.742	46.229	2	0.061119	39691	160511_QHF_FH_JSI11i_2	43.808	33.897			0.64828	0.65969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64828	0.65969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85034000	58327000	26706000	0	0	0	0	0	0	85034000	58327000	26706000	0	0	0	37584	2087	35370	230521	310181	310181			1	
MVDREQLVQK	1	Oxidation (M)	1260.6496	0.64962092	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		20.014	20.014	3	0.047276	16736	160511_QHF_FH_JSI11i_3	39.266	24.064			7.3171	6.9105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.3171	6.9105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43035000	5890300	37144000	0	0	0	0	0	0	43035000	5890300	37144000	0	0	0	37585	1976	35371	230522	310182	310182			1	
MVDREQLVQK	1	Unmodified	1244.6547	0.6547063	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	20.604	20.018	2;3	0.00088726	16814	160511_QHF_FH_JSI11i_3	72.434	56.57			2.532	2.6856	105.08	8	7	Median	1.2021	1.0375	181.1	2	2	Median	2.9837	3.6815	26.641	3	3	Median	1.2179	1.1482	107.87	2	2	Median	0.85368	0.87477	NaN	1	0	Median	1712200000	744040000	968150000	292970000	132310000	160660000	402080000	148120000	253970000	817510000	340840000	476670000	199640000	122780000	76853000	37586	1976	35371	230523;230524;230525;230526;230527;230528;230529;230530	310183;310184;310185;310186;310187;310188;310189;310190	310184			8	
MVDVGGQR	0	Unmodified	860.41744	0.41743614	1330;1697;2531	Q14344;P19086;Q03113;P29992;O95837;P50148	GNA13;GNAZ;GNA12;GNA11;GNA14;GNAQ	Guanine nucleotide-binding protein subunit alpha-13;Guanine nucleotide-binding protein G(z) subunit alpha;Guanine nucleotide-binding protein subunit alpha-12;Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein subunit alpha-14;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0				By MS/MS	2	0		1											1	13.689	12.899	2	0.013763	10178	160511_QHF_FH_JSI12i_2	52.018	27.386			1.0332	1.1415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0332	1.1415	NaN	1	0	Median	77180000	26439000	50741000	0	0	0	0	0	0	0	0	0	77180000	26439000	50741000	37587	2531;1330;1697	35372	230531	310191	310191			1	
MVDVVEK	1	Unmodified	818.42079	0.42079019	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	23.289	22.889	2	0.01211	20179	160511_QHF_FH_JSI12i_1	75.189	42.719			0.32304	0.36493	15.151	2	2	Median	NaN	NaN	NaN	0	0	Median	0.33867	0.4062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30813	0.32786	NaN	1	1	Median	518970000	374750000	144220000	0	0	0	266370000	189930000	76437000	0	0	0	252600000	184820000	67786000	37588	1411	35373	230532;230533	310192;310193	310192			2	
MVEAAPPGPGPLR	0	Acetyl (Protein N-term);Oxidation (M)	1348.6809	0.68092105	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	no	no	0	1	1	0			By MS/MS		1	0	1											1		59.626	59.199	2	1			NaN	NaN			0.82737	0.80352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82737	0.80352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96585000	53678000	42907000	0	0	0	0	0	0	96585000	53678000	42907000	0	0	0	37589	5195	35374	230534					0	
MVEDYYK	1	Unmodified	946.41062	0.41061943	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	24.774	24.13	2	0.054024	20944	160511_QHF_FH_JSI11i_1	44.447	36.294			0.94184	0.86974	12.27	3	0	Plateau	1.0457	0.83884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92308	0.86974	NaN	1	0	Median	1.0215	1.054	NaN	1	0	Median	160340000	73816000	86525000	39705000	18228000	21477000	0	0	0	66563000	30953000	35611000	54073000	24636000	29438000	37590	236	35375	230535;230536;230537	310194;310195	310194			2	
MVEGFFDR	0	Unmodified	999.4484	0.44840192	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	52.257	51.281	2	0.00020243	45232	160511_QHF_FH_JSI10i_2	134.81	126.04			0.78873	0.76232	55.447	4	2	Median	0.68625	0.57872	NaN	1	1	Median	0.29614	0.35978	NaN	1	1	Median	1.1942	1.2259	NaN	1	0	Median	0.90652	1.0042	NaN	1	0	Median	1404600000	751270000	653300000	238350000	121960000	116390000	256250000	161560000	94684000	510730000	247480000	263240000	399250000	220260000	178980000	37591	762	35376	230538;230539;230540;230541	310196;310197;310198;310199	310199			4	
MVEGYQGLR	0	Unmodified	1051.5121	0.51206481	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		30.992	30.333	2	0.00013647	26611	160511_QHF_FH_JSI10i_2	108.09	88.728			0.76485	0.84459	28.58	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57229	0.69004	NaN	1	1	Median	1.0222	1.0337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	414000000	207690000	206310000	0	0	0	145470000	83019000	62448000	268530000	124670000	143860000	0	0	0	37592	2636	35377	230542;230543	310200;310201	310201			2	
MVEINFLCVHK	1	Unmodified	1388.6945	0.69446263	1351	P30419;O60551	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	7		3							3		1	3	2	74.492	69.793	3	1.4299E-09	37108	160513_QHF_FH_JSI11Kac_6	120.96	110.31			0.89485	0.96355	45.76	6	4	Median	NaN	NaN	NaN	0	0	Median	0.79604	0.95717	NaN	1	0	Median	0.97489	0.96997	41.072	3	2	Median	1.2343	1.329	61.426	2	2	Median	345230000	173080000	172150000	0	0	0	149720000	65532000	84191000	157520000	91195000	66328000	37979000	16350000	21629000	37593	1351	35378	230544;230545;230546;230547;230548;230549	310202;310203;310204;310205;310206;310207;310208;310209	310204			8	
MVELMFPLLLLLLPFLLYMAAPQIRK	1	Unmodified	3072.771	0.77099238	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			107.37	101.65	4	1.9702E-07	60216	160513_QHF_FH_JSI10Kac_6	108.59	102.5			2.7364	3.2485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7364	3.2485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19214000	4774900	14439000	0	0	0	19214000	4774900	14439000	0	0	0	0	0	0	37594	3700	35379	230550	310210	310210			1	
MVEMLEK	1	Unmodified	878.42416	0.42416101	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	34.72	33.846	2	0.030864	28792	160511_QHF_FH_JSI11i_2	53.754	32.226			5.6496	5.8576	158.62	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.924	1.9082	NaN	1	1	Median	16.589	17.981	NaN	1	1	Median	140500000	32291000	108210000	0	0	0	0	0	0	100900000	30296000	70600000	39607000	1995500	37611000	37595	5070	35380	230551;230552	310211;310212	310212			2	
MVEPENAVTITPLRPEDDYSPR	0	Unmodified	2528.2217	0.22170303	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		69.853	69.189	3	1.4105E-09	61405	160511_QHF_FH_JSI10i_2	100.21	92.021			1.0311	1.0817	10.435	4	0	Median	1.3787	1.1803	NaN	1	0	Median	0.87388	1.0581	NaN	1	0	Median	1.0311	1.0099	12.82	2	0	Median	NaN	NaN	NaN	0	0	Median	174780000	86505000	88274000	41246000	19915000	21331000	43233000	21439000	21794000	90300000	45151000	45149000	0	0	0	37596	2506	35381	230553;230554;230555;230556	310213;310214;310215;310216;310217;310218;310219;310220;310221	310221			9	
MVEPQYQELK	1	Unmodified	1263.6169	0.61692381	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	2	4	41.43	39.571	2	5.2951E-11	35794	160511_QHF_FH_JSI11i_1	147.2	134.67			0.84877	0.94493	14.677	9	2	Median	1.1486	0.9607	26.021	2	0	Median	0.78447	0.95452	1.4282	2	0	Median	0.93176	0.91164	12.073	2	1	Median	0.78685	0.84877	20.069	3	1	Median	3453500000	1710500000	1743000000	573910000	223930000	349980000	975260000	520790000	454480000	915380000	437380000	478000000	988960000	528440000	460520000	37597	157	35382	230557;230558;230559;230560;230561;230562;230563;230564;230565;230566	310222;310223;310224;310225;310226;310227;310228;310229;310230;310231;310232;310233;310234;310235;310236;310237	310223			16	
MVETLSNLLR	0	Unmodified	1174.638	0.63799361	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		72.301	71.559	2	0.00014548	62518	160511_QHF_FH_JSI11i_2	96.668	50.539			0.24479	0.28094	123.47	3	3	Median	0.24479	0.20533	NaN	1	1	Median	0.22507	0.28094	NaN	1	1	Median	1.9828	2.0035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	291410000	173410000	118000000	73368000	54395000	18973000	103660000	70653000	33010000	114380000	48361000	66018000	0	0	0	37598	1148	35383	230567;230568;230569	310238;310239;310240	310239			3	
MVFFVQNEPPHQIFK	1	Unmodified	1859.9393	0.939261	3480	Q8IZA0	KIAA0319L	Dyslexia-associated protein KIAA0319-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	76.874	76.69	3	5.6302E-05	68401	160511_QHF_FH_JSI11i_3	84.365	79.896			1.6761	1.5939	75.447	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6761	1.5939	NaN	1	0	Median	3.0994	3.1041	91.775	2	1	Median	88061000	34072000	53989000	0	0	0	0	0	0	36969000	16234000	20736000	51091000	17838000	33253000	37599	3480	35384	230570;230571;230572;230573	310241;310242;310243	310241			3	
MVFINNIALAQIK	1	Unmodified	1473.8378	0.83775605	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.11		10	10						8	7	6	8	7	90.487	87.7	2;3	2.1669E-109	44404	160513_QHF_FH_JSI10Kac_6	264.62	249.68			1.0029	1.0153	31.661	27	9	Median	1.2024	1.0074	21.093	7	2	Median	0.73614	0.88506	26.875	6	2	Median	1.25	1.163	44.765	8	4	Median	0.91439	1.0235	28.629	6	1	Median	4752100000	2330200000	2421800000	1445500000	645720000	799760000	1590600000	956160000	634480000	1168900000	482560000	686330000	547030000	245760000	301270000	37600	1544	35385	230574;230575;230576;230577;230578;230579;230580;230581;230582;230583;230584;230585;230586;230587;230588;230589;230590;230591;230592;230593;230594;230595;230596;230597;230598;230599;230600;230601	310244;310245;310246;310247;310248;310249;310250;310251;310252;310253;310254;310255;310256;310257;310258;310259;310260;310261;310262;310263;310264;310265;310266;310267;310268;310269;310270;310271;310272;310273;310274;310275;310276;310277;310278;310279;310280;310281;310282;310283;310284;310285;310286;310287;310288;310289;310290;310291;310292;310293	310291			50	
MVFINNIALAQIK	1	Oxidation (M)	1489.8327	0.83267067	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.51		1						1	3	1	1	1	2	82.131	72.686	2	3.6301E-08	38568	160513_QHF_FH_JSI12Kac_6	112.75	97.776			1.128	1.1308	29.149	4	2	Median	1.6078	1.3926	NaN	1	1	Median	0.69659	0.80359	NaN	1	0	Median	1.4487	1.428	NaN	1	1	Median	0.87838	0.91825	NaN	1	0	Median	105640000	43291000	62353000	46537000	16027000	30510000	1492300	849990	642340	24459000	9059700	15399000	33156000	17355000	15801000	37601	1544	35385	230602;230603;230604;230605;230606	310294;310295;310296;310297	310297		1216	4	
MVFQENSR	0	Unmodified	1009.4651	0.46511462	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	20.82	20.022	2	0.0038407	17241	160511_QHF_FH_JSI10i_2	70.525	51.794			0.9144	1.0689	20.218	4	1	Median	1.4487	1.2509	NaN	1	0	Median	0.85956	1.0533	NaN	1	0	Median	0.75598	0.77384	NaN	1	1	Median	0.97274	1.0848	NaN	1	0	Median	335710000	145960000	189750000	56088000	21634000	34453000	93901000	39802000	54099000	95988000	38506000	57482000	89734000	46022000	43711000	37602	2239	35386	230607;230608;230609;230610	310298;310299;310300;310301;310302	310302			5	
MVFSYHNSFLIADR	0	Unmodified	1698.8188	0.81881152	2292	Q0VDG4	SCRN3	Secernin-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.043	69.768	3	0.031253	38001	160513_QHF_FH_JSI10Kac_6	42.568	37.938			0.43893	0.52626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43893	0.52626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42597000	28656000	13941000	0	0	0	42597000	28656000	13941000	0	0	0	0	0	0	37603	2292	35387	230611	310303	310303			0	
MVGDVTGAQAYASTAK	1	Unmodified	1568.7505	0.75045718	2171	Q01628;P13164	IFITM3;IFITM1	Interferon-induced transmembrane protein 3;Interferon-induced transmembrane protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	42.354	41.591	2	6.5664E-15	37368	160511_QHF_FH_JSI10i_1	155.66	142			0.92451	0.89894	81.016	5	2	Median	0.9549	0.79993	146	2	2	Median	1.0455	1.2352	NaN	1	0	Median	0.92451	0.89894	NaN	1	0	Median	0.44806	0.4662	NaN	1	0	Median	451950000	244420000	207540000	68118000	35404000	32714000	110080000	45499000	64579000	124190000	60924000	63262000	149570000	102590000	46980000	37604	2171	35388	230612;230613;230614;230615;230616	310304;310305;310306;310307;310308;310309	310307			6	
MVGFDMSK	1	Unmodified	913.40376	0.40375991	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.299	43.805	2	0.053768	37576	160511_QHF_FH_JSI11i_2	36.447	19.52			1.3211	1.2913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3211	1.2913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49244000	21967000	27277000	0	0	0	0	0	0	49244000	21967000	27277000	0	0	0	37605	1207	35389	230617	310310	310310			1	
MVGFIIGR	0	Unmodified	891.50004	0.50004356	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	70.64	61.773	2	0.0001758	33921	160513_QHF_FH_JSI10Kac_6	119.22	100.42			1.0937	1.212	11.491	4	0	Linear	1.163	0.97884	NaN	1	0	Median	1.0285	1.1939	NaN	1	0	Median	1.1682	1.1332	NaN	1	0	Median	0.899	0.93895	NaN	1	0	Median	386460000	171390000	215070000	59658000	24605000	35053000	192620000	76579000	116050000	100570000	52509000	48060000	33607000	17699000	15908000	37606	4118	35390	230618;230619;230620;230621	310311;310312;310313;310314;310315	310315			5	
MVGGVLVER	0	Unmodified	958.52699	0.52698659	5313	Q9UHV9	PFDN2	Prefoldin subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.6	6.62		1	1						3	1		2	2	44.261	38.426	2	0.00042813	32891	160511_QHF_FH_JSI12i_3	90.657	64.055			1.3179	1.1969	20.745	5	2	Median	1.3731	1.1969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2817	1.2761	37.728	2	1	Median	1.1954	1.2567	16.436	2	1	Median	707900000	295310000	412590000	9510900	3654900	5856000	0	0	0	375490000	149910000	225580000	322900000	141750000	181150000	37607	5313	35391	230622;230623;230624;230625;230626	310316;310317;310318	310318			3	
MVGLVVAIVK	1	Unmodified	1027.6464	0.64637345	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	81.423	80.651	2	0.0035519	70156	160511_QHF_FH_JSI12i_3	69.198	57.429			0.31694	0.35653	31.762	2	2	Median	NaN	NaN	NaN	0	0	Median	0.23497	0.28481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42749	0.4463	NaN	1	1	Median	19415000	15170000	4244200	0	0	0	5206700	4746900	459760	0	0	0	14208000	10423000	3784400	37608	5694	35392	230627;230628	310319;310320	310320			2	
MVGNLLSLGK	1	Unmodified	1030.5845	0.58450147	631	O94952	FBXO21	F-box only protein 21	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.295	65.149	2	0.0033889	56308	160511_QHF_FH_JSI12i_3	69.812	39.645			6.039	6.0095	133.99	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4369	2.3301	NaN	1	1	Median	14.966	15.499	NaN	1	1	Median	33160000	2987200	30173000	0	0	0	0	0	0	18446000	2457200	15989000	14714000	529990	14184000	37609	631	35393	230629;230630	310321;310322	310322			2	
MVGQLSEGAIAAIMQK	1	Unmodified	1645.8531	0.85314811	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	87.79	87.517	2;3	7.4381E-05	76106	160511_QHF_FH_JSI12i_3	101.39	91.703			1.2467	1.2589	139	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48341	0.47111	NaN	1	1	Median	3.2152	3.364	NaN	1	1	Median	29921000	19479000	10442000	0	0	0	0	0	0	6269500	4732900	1536700	23651000	14746000	8904900	37610	1293	35394	230631;230632;230633;230634;230635	310323;310324;310325;310326;310327;310328;310329	310329			7	
MVGQVLGAVGALPEIFTELEISYFLLR	0	Unmodified	2964.6035	0.60345259	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.2	5.72		1		1					2	1	2	1		105.04	99.866	3;4	2.2581E-34	58749	160513_QHF_FH_JSI10Kac_6	145.14	133.4			1.0803	1.2761	29.55	4	2	Median	0.94345	0.81223	NaN	1	1	Median	1.0803	1.2761	6.6995	2	1	Median	1.674	1.6414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	499750000	199440000	300300000	11804000	7828800	3975300	483080000	188870000	294210000	4860400	2740000	2120500	0	0	0	37611	1508	35395	230636;230637;230638;230639	310330;310331;310332;310333	310332			4	
MVGQVLGAVGALPEIFTELEISYFLLRR	0	Unmodified	3120.7046	0.70456361	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			102.41	96.692	3;4	1.2071E-09	57166	160513_QHF_FH_JSI10Kac_6	118.01	87.263			1.2624	1.4882	2.0723	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2624	1.4882	2.0723	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95373000	32054000	63318000	0	0	0	95373000	32054000	63318000	0	0	0	0	0	0	37612	1508	35396	230640;230641	310334;310335	310335			2	
MVGTTSVVK	1	Unmodified	920.5001	0.50010314	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		22.676	22.341	2	0.047412	18458	160511_QHF_FH_JSI11i_2	44.753	30.596			2.4831	2.4977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4831	2.4977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56923000	20679000	36244000	0	0	0	0	0	0	56923000	20679000	36244000	0	0	0	37613	2800	35397	230642	310336	310336			1	
MVGVPAALDMMLTGR	0	Unmodified	1560.7826	0.78262571	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	3	3	2	101.66	101.56	2;3	2.1677E-16	90105	160511_QHF_FH_JSI10i_2	117.79	104.13			1.0282	1.1545	26.514	9	0	Median	1.5228	1.2549	31.818	2	0	Median	0.87874	1.0737	16.919	2	0	Median	0.93429	0.96829	39.31	3	0	Median	1.2099	1.3596	23.134	2	0	Median	2060900000	1109400000	951490000	463620000	201380000	262240000	427260000	290640000	136620000	666530000	368420000	298110000	503500000	248980000	254520000	37614	1507	35398	230643;230644;230645;230646;230647;230648;230649;230650;230651;230652	310337;310338;310339;310340;310341;310342;310343;310344;310345;310346	310346			10	
MVHFLTHYADK	1	Unmodified	1360.6598	0.65979168	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.17			21						11	11	8	5	8	41.44	38.081	2;3;4	6.601E-06	32055	160511_QHF_FH_JSI9i_3	104.05	74.575			1.8438	1.8417	127	27	22	Median	3.6883	3.0289	175.72	8	6	Median	0.88594	1.0524	119.06	8	7	Median	2.0614	1.9452	47.689	5	3	Median	1.0921	1.111	97.849	6	6	Median	2360800000	892180000	1468600000	385810000	102610000	283190000	250230000	105120000	145110000	579810000	202210000	377600000	1144900000	482240000	662680000	37615	3959	35399	230653;230654;230655;230656;230657;230658;230659;230660;230661;230662;230663;230664;230665;230666;230667;230668;230669;230670;230671;230672;230673;230674;230675;230676;230677;230678;230679;230680;230681;230682;230683;230684	310347;310348;310349;310350;310351;310352;310353;310354;310355;310356;310357;310358;310359;310360;310361;310362;310363;310364;310365;310366;310367;310368;310369;310370;310371;310372;310373;310374;310375;310376;310377;310378;310379;310380	310364			33	
MVHGVYKK	2	Unmodified	960.52151	0.52150728	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	7.3446	7.1168	2;3	0.0049273	5288	160511_QHF_FH_JSI10i_3	86.086	66.992			0.44573	0.35548	130.25	9	8	Median	1.1099	0.88599	129.15	2	2	Median	0.50718	0.57473	119.27	2	2	Median	0.23702	0.21538	172.96	3	2	Median	1.0772	1.1042	184.8	2	2	Median	1166700000	577550000	589130000	176380000	64980000	111400000	172230000	99956000	72272000	293930000	135600000	158340000	524140000	277020000	247120000	37616	645	35400	230685;230686;230687;230688;230689;230690;230691;230692;230693	310381;310382;310383;310384;310385;310386;310387;310388;310389	310385			9	
MVHGVYKK	2	Acetyl (K)	1002.5321	0.53207197	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	21.204	13.457	3	0.001124	8317	160513_QHF_FH_JSI11Kac_6	85.064	75.85			0.0079762	0.0080564	5.6964	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.0074434	0.008835	NaN	1	1	Median	0.0081039	0.0079621	NaN	1	1	Median	0.0072579	0.0080564	NaN	1	1	Median	51542000	50498000	1044400	0	0	0	17121000	16745000	376310	24138000	23661000	476950	10284000	10093000	191100	37617	645	35400	230694;230695;230696	310390;310391;310392	310390	321		3	
MVHIDEEMGPK	1	Unmodified	1284.5842	0.58424348	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	34.642	34.231	2;3	0.003098	29163	160511_QHF_FH_JSI11i_2	52.693	44.308			2.272	2.2577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.272	2.2577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54139000	19119000	35020000	0	0	0	0	0	0	54139000	19119000	35020000	0	0	0	37618	4679	35401	230697;230698	310393;310394	310394			2	
MVHILTSVVGSK	1	Unmodified	1269.7115	0.7114929	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	4	3	2	3	55.119	51.886	2;3	4.8031E-05	44022	160511_QHF_FH_JSI12i_3	110.38	96.612			0.23858	0.19554	231.95	9	9	Median	1.111	0.91384	228.46	4	4	Median	0.010348	0.012025	NaN	1	1	Median	0.18727	0.18022	91.548	2	2	Median	0.62934	0.63021	288.87	2	2	Median	692570000	438290000	254280000	234980000	134090000	100890000	89007000	37108000	51899000	118550000	110020000	8528100	250030000	157070000	92966000	37619	4302	35402	230699;230700;230701;230702;230703;230704;230705;230706;230707;230708;230709;230710	310395;310396;310397;310398;310399;310400;310401;310402;310403;310404;310405;310406;310407	310404			13	
MVHVQDFTAFWDK	1	Unmodified	1622.7551	0.75514863	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	83.894	83.55	3	4.0623E-05	72192	160511_QHF_FH_JSI12i_3	70.68	61.883			2.6805	2.6185	62.272	4	3	Median	6.6974	5.9364	NaN	1	1	Median	1.1083	1.3568	NaN	1	1	Median	3.3498	3.1471	NaN	1	1	Median	2.1449	2.1787	NaN	1	0	Median	149450000	39253000	110200000	15978000	3677800	12300000	23493000	9579300	13914000	58880000	12215000	46664000	51102000	13781000	37321000	37620	292	35403	230711;230712;230713;230714	310408;310409;310410;310411	310411			4	
MVIENELEDPAIMR	0	Unmodified	1658.8008	0.80077819	3305	Q86TB9	PATL1	Protein PAT1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.183	74.692	2	2.4424E-21	67663	160511_QHF_FH_JSI10i_1	173.71	157.46			1.3497	1.2298	26.409	4	1	Median	1.574	1.3153	NaN	1	1	Median	0.78287	0.9253	NaN	1	0	Median	1.1574	1.1499	NaN	1	0	Median	1.7032	1.7395	NaN	1	0	Median	100640000	47826000	52814000	9370900	3236700	6134200	37600000	22143000	15457000	26826000	13539000	13287000	26843000	8907700	17935000	37621	3305	35404	230715;230716;230717;230718	310412;310413;310414;310415;310416;310417;310418	310417			7	
MVIEYAR	0	Unmodified	880.44767	0.44767364	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0				By MS/MS	15	0								1					1	42.496	32.566	2	0.043148	17287	160513_QHF_FH_JSI12Kac_5	55.441	46.201			0.85983	0.93328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85983	0.93328	NaN	1	0	Median	2967400	1574300	1393100	0	0	0	0	0	0	0	0	0	2967400	1574300	1393100	37622	874	35405	230719	310419	310419			1	
MVIHVFSLQQMTAHK	1	Unmodified	1768.9117	0.91166605	5297	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	73.144	66.863	4	3.4401E-24	34627	160513_QHF_FH_JSI12Kac_6	148.68	129.08			0.88996	0.90961	18.153	6	0	Median	1.1476	0.9632	33.253	2	0	Median	0.85594	1.0063	16.032	2	0	Median	0.87584	0.82272	NaN	1	0	Median	0.88148	0.92093	NaN	1	0	Median	1050800000	540850000	509950000	177010000	82159000	94849000	620740000	313130000	307610000	142650000	90021000	52634000	110390000	55536000	54856000	37623	5297	35406	230720;230721;230722;230723;230724;230725	310420;310421;310422;310423;310424;310425;310426	310425			5	
MVIITGPPEAQFK	1	Unmodified	1429.7639	0.7639224	132;5153;5737	O00425;Q9NZI8;Q9Y6M1	IGF2BP3;IGF2BP1;IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.48	5	5	4					4		5	6	4	3	72.49	69.615	2;3	3.5348E-22	61677	160511_QHF_FH_JSI11i_2	210.27	210.27			0.9756	1.0113	28.421	14	4	Median	1.1302	0.94743	28.339	4	1	Median	0.81353	1.004	39.675	5	2	Median	1.0598	1.063	3.4323	2	0	Median	0.90613	0.99107	15.128	3	1	Median	1411200000	670800000	740430000	298710000	129220000	169490000	353730000	181060000	172670000	437020000	214350000	222670000	321770000	146170000	175600000	37624	132;5153;5737	35407	230726;230727;230728;230729;230730;230731;230732;230733;230734;230735;230736;230737;230738;230739;230740;230741;230742;230743	310427;310428;310429;310430;310431;310432;310433;310434;310435;310436;310437;310438;310439;310440;310441;310442;310443;310444;310445;310446;310447;310448;310449;310450;310451;310452;310453;310454;310455;310456;310457	310450			31	
MVILLCNLK	1	Unmodified	1102.6243	0.6242578	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.05		2						5	5	2	4	4	2	80.745	72.05	2	3.6705E-05	38636	160513_QHF_FH_JSI9Kac_6	105.39	81.418			0.53125	0.54459	111.14	11	11	Median	0.76643	0.64785	97.94	2	2	Median	0.35828	0.42778	89.578	4	4	Median	1.1809	1.1309	84.014	3	3	Median	0.87638	0.93205	254.1	2	2	Median	954630000	586990000	367640000	107340000	64294000	43045000	387650000	286500000	101150000	294970000	158510000	136460000	164670000	77690000	86979000	37625	2323	35408	230744;230745;230746;230747;230748;230749;230750;230751;230752;230753;230754;230755	310458;310459;310460;310461;310462;310463;310464;310465;310466;310467;310468;310469	310466			12	
MVILLCNLK	1	Oxidation (M)	1118.6192	0.61917242	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	74.591	64.019	2	0.038417	31692	160513_QHF_FH_JSI12Kac_5	56.011	44.289			0.15846	0.16917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15846	0.16917	NaN	1	1	Median	2346500	2111500	234960	0	0	0	0	0	0	0	0	0	2346500	2111500	234960	37626	2323	35408	230756	310470	310470			1	
MVILLCNLKPAK	2	Unmodified	1398.8091	0.80909845	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		72.573	67.875	3	5.6676E-06	36309	160513_QHF_FH_JSI11Kac_6	106.29	84.059			0.15995	0.16913	81.519	4	4	Median	0.64259	0.51972	NaN	1	1	Median	0.084083	0.099379	33.508	2	2	Median	0.23709	0.2271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	387250000	326840000	60407000	44120000	26227000	17893000	217940000	200340000	17596000	125190000	100270000	24918000	0	0	0	37627	2323	35409	230757;230758;230759;230760	310471;310472;310473;310474	310472			4	
MVINHLEK	1	Unmodified	982.52699	0.52698659	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	3.7		12	11						2	6	5	6	8	22.729	21.431	2;3	0.00052953	17363	160511_QHF_FH_JSI12i_3	75.378	31.57			2.3596	2.4454	120.82	25	19	Median	4.7931	3.9791	94.909	6	5	Median	2.1278	2.4111	133.63	5	4	Median	2.1371	2.0927	98.398	6	5	Median	2.0031	2.1746	152.44	8	5	Median	8046300000	2646000000	5400300000	1541000000	437710000	1103300000	1705300000	695130000	1010200000	2693600000	938640000	1755000000	2106300000	574490000	1531800000	37628	1721	35410	230761;230762;230763;230764;230765;230766;230767;230768;230769;230770;230771;230772;230773;230774;230775;230776;230777;230778;230779;230780;230781;230782;230783;230784;230785	310475;310476;310477;310478;310479;310480;310481;310482;310483;310484;310485;310486;310487;310488;310489;310490;310491;310492;310493;310494;310495;310496;310497;310498;310499;310500	310497			26	
MVINHLEK	1	Oxidation (M)	998.5219	0.52190122	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By matching	2.25	0.433		3	1								1	2	1	22.092	21.497	2;3	0.0060452	17975	160511_QHF_FH_JSI11i_3	56.258	23.938			1.003	1.1184	103.18	4	1	Median	NaN	NaN	NaN	0	0	Median	0.8751	1.0815	NaN	1	0	Median	0.72706	0.7058	69.841	2	1	Median	4.6387	5.2077	NaN	1	0	Median	305590000	142420000	163170000	0	0	0	59392000	31231000	28160000	196480000	102340000	94146000	49717000	8848800	40868000	37629	1721	35410	230786;230787;230788;230789	310501;310502;310503	310501		1400	3	
MVINHLEKLFVTNDAATILR	1	Acetyl (K)	2339.2671	0.26713708	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		91.309	81.949	3	6.3825E-06	45964	160513_QHF_FH_JSI11Kac_6	140.2	125.43			0.36773	0.34654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36773	0.34654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75809000	62016000	13793000	0	0	0	0	0	0	75809000	62016000	13793000	0	0	0	37630	1721	35411	230790	310504	310504	1735		1	
MVIPGGIDVHTR	0	Unmodified	1293.6863	0.68634078	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	3	3	53.001	52.236	2;3	2.788E-32	45966	160511_QHF_FH_JSI9i_2	171.92	162.14			0.96755	1.0634	33.002	11	1	Median	1.2772	1.0684	32.89	3	1	Plateau	0.82697	1.0194	16.042	2	0	Median	1.1784	1.1616	22.044	3	0	Plateau	1.5265	1.5691	31.07	3	0	Median	2253000000	1015700000	1237300000	264860000	112510000	152360000	419290000	217860000	201430000	850090000	379390000	470700000	718760000	305960000	412790000	37631	2739	35412	230791;230792;230793;230794;230795;230796;230797;230798;230799;230800;230801	310505;310506;310507;310508;310509;310510;310511;310512;310513;310514;310515;310516;310517;310518;310519;310520	310511			16	
MVKEALHER	1	Acetyl (K)	1153.5914	0.59137776	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		27.542	18.41	3	0.0054189	11027	160513_QHF_FH_JSI11Kac_6	61.815	49.2			0.032412	0.03246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.032412	0.03246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2628200	2505200	123000	0	0	0	0	0	0	2628200	2505200	123000	0	0	0	37632	1558	35413	230802	310521	310521	1576		1	
MVKGMGGAMDLVSSAK	2	Acetyl (K)	1622.783	0.78301964	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		78.014	67.495	2	0.0062179	33691	160513_QHF_FH_JSI10Kac_5	69.451	57.237			0.093547	0.09071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.093547	0.09071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2794200	2690100	104170	0	0	0	1184200	1184200	0	1610000	1505900	104170	0	0	0	37633	1865	35414	230803;230804	310522;310523	310523	1879		2	
MVLAAAGGVEHQQLLDLAQK	1	Unmodified	2091.1147	0.11465919	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	75.182	74.44	3	4.4623E-55	65607	160511_QHF_FH_JSI9i_2	219.79	210.23			0.87497	0.90156	15.1	5	0	Median	0.89141	0.77066	NaN	1	0	Median	0.73165	0.90156	NaN	1	0	Median	0.86339	0.87135	NaN	1	0	Median	1.0147	1.06	12.859	2	0	Median	1663200000	846240000	816990000	287360000	134610000	152740000	442610000	223050000	219570000	335330000	166240000	169090000	597920000	322340000	275580000	37634	1379	35415	230805;230806;230807;230808;230809;230810	310524;310525;310526;310527;310528;310529;310530;310531;310532;310533;310534;310535	310529			12	
MVLAGVGVEHEHLVDCAR	0	Unmodified	1990.9717	0.97170012	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	53.264	53.146	3;4	0.001543	45567	160511_QHF_FH_JSI12i_3	54.288	49.286			1.0196	0.93724	0.43919	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0357	0.94016	NaN	1	0	Median	1.0037	0.93434	NaN	1	0	Median	71344000	37629000	33714000	0	0	0	0	0	0	39534000	19835000	19698000	31810000	17794000	14016000	37635	2299	35416	230811;230812;230813	310536;310537	310536			1	
MVLCSQQWK	1	Unmodified	1178.5576	0.55763479	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		43.589	43.105	2	0.00073795	37017	160511_QHF_FH_JSI11i_2	86.011	77.592			0.36427	0.36361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36427	0.36361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46094000	28138000	17956000	0	0	0	0	0	0	46094000	28138000	17956000	0	0	0	37636	1117	35417	230814	310538	310538			1	
MVLDHLVIQR	0	Unmodified	1222.6856	0.6856125	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	3	3	2	55.871	55.025	3	6.7887E-07	48638	160511_QHF_FH_JSI11i_3	111.06	101.7			1.3975	1.3355	34.256	5	2	Median	1.8462	1.6062	NaN	1	1	Median	0.58505	0.72282	NaN	1	1	Median	1.3975	1.3355	NaN	1	0	Median	1.1289	1.1916	34.478	2	0	Median	255930000	115060000	140870000	33770000	10104000	23665000	51598000	30215000	21382000	82803000	35894000	46909000	87759000	38843000	48916000	37637	183	35418	230815;230816;230817;230818;230819;230820;230821;230822;230823;230824	310539;310540;310541;310542;310543;310544;310545;310546;310547;310548;310549;310550;310551	310540			13	
MVLHGAK	1	Unmodified	754.41598	0.41597958	330	O43402	EMC8	ER membrane protein complex subunit 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	8.1148	8.2125	2	0.015049	5650	160511_QHF_FH_JSI12i_3	65.263	65.263			1.0517	1.049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0517	1.049	NaN	1	0	Median	130540000	57365000	73175000	0	0	0	0	0	0	0	0	0	130540000	57365000	73175000	37638	330	35419	230825	310552	310552			1	
MVLIALRK	1	Unmodified	942.60484	0.60484298	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			56.829	48.317	3	0.019073	26550	160513_QHF_FH_JSI10Kac_6	42.869	37.559			1.042	1.2317	131.8	2	2	Median	NaN	NaN	NaN	0	0	Median	1.042	1.2317	131.8	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36084000	14967000	21118000	0	0	0	36084000	14967000	21118000	0	0	0	0	0	0	37639	610	35420	230826;230827	310553;310554	310553			2	
MVLLFEILR	0	Unmodified	1132.6678	0.66783717	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			95.748	88.354	2	2.5443E-11	51789	160513_QHF_FH_JSI10Kac_6	157.58	109.84			0.33261	0.29252	NaN	1	1	Median	0.33261	0.29252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64264000	55250000	9014200	28931000	19917000	9014200	35333000	35333000	0	0	0	0	0	0	0	37640	1581	35421	230828;230829	310555;310556	310556			2	
MVLLLNLQNLYESLYDALNQYYVHLGGQK	1	Unmodified	3411.7537	0.75369865	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103.27	97.552	3;4	4.1432E-228	57744	160513_QHF_FH_JSI10Kac_6	306.47	284.52			1.0588	1.2633	53.135	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0588	1.2633	53.135	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	395580000	235300000	160280000	0	0	0	395580000	235300000	160280000	0	0	0	0	0	0	37641	3009	35422	230830;230831	310557;310558;310559;310560	310558			4	
MVLLTMIAR	0	Unmodified	1046.598	0.59804305	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							2	1		1	16.735	16.163	3	0.062226	13511	160511_QHF_FH_JSI9i_2	11.164	0.93347			0.087363	0.11207	17.828	4	0	Linear	0.13226	0.11207	0	2	0	Median	0.11286	0.13917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.088401	0.089926	NaN	1	0	Median	2037300000	1617500000	419800000	427490000	337730000	89760000	349620000	274780000	74835000	0	0	0	1260200000	1005000000	255210000	37642	520	35423	230832;230833;230834;230835	310561	310561			1	
MVLQEWLSHLEK	1	Unmodified	1511.7806	0.7806351	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	89.054	88.966	3	0.0018518	77225	160511_QHF_FH_JSI12i_3	59.227	52.346			1.8292	1.9014	52.304	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8292	1.9014	52.304	2	2	Median	82880000	23663000	59217000	0	0	0	0	0	0	0	0	0	82880000	23663000	59217000	37643	5472	35424	230836;230837;230838	310562;310563;310564	310564			3	
MVLSGCAIIVR	0	Unmodified	1217.6624	0.66243422	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	67.264	62.403	2	5.6714E-27	34175	160513_QHF_FH_JSI10Kac_6	182.98	158.83			0.94912	0.93774	19.456	8	0	Median	0.98328	0.83196	5.6626	2	0	Median	0.90266	1.1019	22.736	2	0	Median	0.91836	0.89357	6.7498	2	0	Median	1.1064	1.2111	14.262	2	0	Median	775520000	387510000	388010000	87492000	43803000	43689000	332160000	179010000	153150000	288250000	134120000	154130000	67620000	30574000	37046000	37644	3213	35426	230839;230840;230841;230842;230843;230844;230845;230846	310565;310566;310567;310568;310569;310570;310571;310572;310573;310574;310575	310575			10	
MVLSGCAIIVR	0	Oxidation (M)	1233.6573	0.65734884	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.452								5	2	1	3	1	2	61.868	51.602	2	0.00015404	26094	160513_QHF_FH_JSI10Kac_5	93.551	73.222			1.1084	1.2414	33.03	5	3	Median	1.4853	1.2414	NaN	1	0	Median	1.1084	1.3001	40.573	3	3	Median	0.88953	0.84848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19300000	9470400	9829100	3527800	1476200	2051600	13127000	6471900	6655200	2644700	1522300	1122400	0	0	0	37645	3213	35426	230847;230848;230849;230850;230851;230852;230853	310576;310577;310578;310579;310580;310581;310582;310583;310584	310581		2218	9	
MVLSNMEK	1	Unmodified	950.45652	0.45652377	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			31.47	30.48	2	0.020271	26699	160511_QHF_FH_JSI10i_2	45.972	17.55			0.87928	0.90727	28.187	2	0	Median	0.86373	0.74332	NaN	1	0	Median	0.8951	1.1074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	210180000	110010000	100170000	110460000	56109000	54349000	99725000	53905000	45821000	0	0	0	0	0	0	37646	1317	35427	230854;230855	310585	310585			1	
MVLSVFSPYWLINK	1	Unmodified	1695.9058	0.90583561	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		96.852	88.452	2	9.9885E-125	49932	160513_QHF_FH_JSI11Kac_6	289.73	249.81			0.85926	0.89728	23.975	4	2	Median	0.83051	0.71155	NaN	1	0	Median	0.80055	0.94341	NaN	1	0	Median	1.0817	1.038	27.692	2	2	Median	NaN	NaN	NaN	0	0	Median	512700000	262260000	250430000	104780000	56778000	48001000	169650000	96110000	73540000	238270000	109370000	128890000	0	0	0	37647	3196	35428	230856;230857;230858;230859	310586;310587;310588;310589	310587			4	
MVLTMMSGDMNIWPEYKNR	1	Acetyl (K);3 Oxidation (M)	2405.0524	0.052394561	1405	P33681	CD80	T-lymphocyte activation antigen CD80	yes	yes	1	0	3	1	By MS/MS	By MS/MS			16	0									2	1	1			87.014	79.845	3	0.014389	43635	160513_QHF_FH_JSI9Kac_6	32.181	27.564			0.94656	0.95133	29.275	2	0	Median	0.91106	0.77344	NaN	1	0	Median	0.98344	1.1701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	725600000	339940000	385660000	470820000	221450000	249370000	254790000	118490000	136290000	0	0	0	0	0	0	37648	1405	35429	230860;230861	310590;310591	310590	1363	1048;1049;1050;1051	2	
MVLTNYMFPQQPR	0	Unmodified	1623.7902	0.79015393	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	76.826	75.924	2	9.5849E-17	67520	160511_QHF_FH_JSI10i_2	135.55	111.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37649	4226	35430	230862;230863;230864	310592;310593;310594	310594			3	
MVLVGDVK	1	Unmodified	859.48372	0.48372479	1920;1008	P60891;P11908	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.33	4	4	2				2	1		3	3	2	5	45.073	42.01	2	0.0016392	36807	160511_QHF_FH_JSI9i_2	86.794	29.33			0.985	1.0686	28.122	13	0	Median	1.3058	1.1208	17.756	3	0	Plateau	1.0837	1.2797	14.252	3	0	Median	1.1612	1.1587	36.598	2	0	Median	0.92737	1.0064	35.456	5	0	Median	3203800000	1608400000	1595400000	610140000	276030000	334110000	759600000	423920000	335690000	1044300000	464180000	580150000	789700000	444240000	345460000	37650	1920;1008	35431	230865;230866;230867;230868;230869;230870;230871;230872;230873;230874;230875;230876;230877	310595;310596;310597;310598;310599;310600;310601;310602;310603;310604;310605;310606;310607	310604			13	
MVLVGDVKDR	1	Acetyl (K)	1172.6223	0.62234354	1920;1008	P60891;P11908	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	no	no	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		62.143	51.082	2	0.011039	28893	160513_QHF_FH_JSI11Kac_4	66.435	36.625			0.04112	0.041307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.04112	0.041307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5013100	4918500	94518	0	0	0	0	0	0	5013100	4918500	94518	0	0	0	37651	1920;1008	35432	230878;230879	310608;310609	310608	805		2	
MVMETIEK	1	Unmodified	979.47184	0.47183948	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								3	3	1	2	34.619	33.656	2	0.0017409	28425	160511_QHF_FH_JSI12i_2	98.523	78.887			1.0163	1.2573	112.9	9	6	Median	1.6833	1.481	172.17	3	1	Median	1.0163	1.2573	59.786	3	2	Median	0.28978	0.29576	NaN	1	1	Median	0.59768	0.66046	124.6	2	2	Median	1063600000	596380000	467210000	318680000	167860000	150820000	402600000	201910000	200690000	189170000	138800000	50371000	153130000	87800000	65332000	37652	542	35433	230880;230881;230882;230883;230884;230885;230886;230887;230888	310610;310611;310612;310613;310614;310615;310616;310617;310618	310610			9	
MVMIQDGPLPTGADK	1	Unmodified	1571.7687	0.76874978	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			62.346	61.965	2	0.00013094	56017	160511_QHF_FH_JSI10i_1	110.08	91.765			0.030494	0.036549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.030494	0.036549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3139300000	3084700000	54677000	0	0	0	3139300000	3084700000	54677000	0	0	0	0	0	0	37653	4118	35434	230889	310619	310619			1	
MVMIQDGPQNTGADK	1	Unmodified	1603.7334	0.73342691	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.9	5	1				5				1	4	3	3	42.906	38.378	2;3	8.4846E-117	34332	160511_QHF_FH_JSI10i_1	275.01	250.72			1.0857	1.0347	34.839	11	7	Median	1.0857	0.88492	NaN	1	0	Median	1.0685	1.2984	42.25	4	3	Median	1.1918	1.1618	43.803	3	2	Median	0.87456	0.93256	30.573	3	2	Median	2846900000	1250300000	1596500000	616490000	243010000	373490000	806950000	354200000	452750000	760960000	341890000	419070000	662470000	311230000	351250000	37654	3966	35435	230890;230891;230892;230893;230894;230895;230896;230897;230898;230899;230900	310620;310621;310622;310623;310624;310625;310626;310627;310628;310629;310630;310631;310632;310633;310634;310635;310636;310637;310638	310629			19	
MVMIQDGPQNTGADK	1	Oxidation (M)	1619.7283	0.72834153	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	4									3			1	39.117	38.105	2	5.5025E-06	33719	160511_QHF_FH_JSI9i_1	155.99	113.89			3.0236	2.5003	50.127	2	2	Median	3.0236	2.5003	50.127	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150290000	41338000	108950000	137390000	41338000	96051000	0	0	0	0	0	0	12900000	0	12900000	37655	3966	35435	230901;230902;230903;230904	310639;310640;310641;310642	310641		2367;2368	4	
MVMIQDGPQNTGADKPLR	1	Unmodified	1969.9714	0.97136577	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	45.606	44.63	3	1.4013E-08	39292	160511_QHF_FH_JSI10i_2	128.69	113.54			0.7146	0.52718	22.338	4	2	Linear	0.91049	0.77845	NaN	1	1	Median	0.44302	0.5398	NaN	1	0	Median	0.61678	0.63104	NaN	1	0	Median	0.82792	0.89457	NaN	1	1	Median	282460000	160460000	121990000	65700000	31406000	34294000	126610000	78367000	48244000	58711000	39630000	19081000	31433000	11058000	20375000	37656	3966	35436	230905;230906;230907;230908	310643;310644;310645;310646	310646			4	
MVMLGLK	1	Unmodified	790.4445	0.44450252	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		63.661	53.975	2	0.037769	29249	160513_QHF_FH_JSI11Kac_6	53.71	40.882			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37657	1283	35437	230909	310647	310647			1	
MVMTVFACLMGR	0	2 Oxidation (M)	1446.6492	0.64916869	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	75.05	66.97	2	4.225E-16	34175	160513_QHF_FH_JSI12Kac_6	138.08	121.05			0.88159	0.9394	37.875	5	1	Median	1.0981	0.9394	NaN	1	0	Median	0.80372	0.93727	11.323	2	1	Median	0.49649	0.48882	NaN	1	0	Median	1.2797	1.382	NaN	1	0	Median	203810000	107050000	96758000	22074000	11521000	10553000	138710000	76222000	62485000	15480000	8349300	7130900	27550000	10961000	16589000	37658	1039	35438	230910;230911;230912;230913;230914	310648;310649;310650;310651;310652;310653;310654	310651		656;657;658	6	
MVMTVFACLMGR	0	Unmodified	1414.6593	0.65933945	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	90.565	82.174	2	5.1857E-24	45767	160513_QHF_FH_JSI11Kac_6	166.33	162.03			1.0539	1.1181	49.25	5	3	Median	1.0898	0.94114	62.743	2	2	Median	1.4249	1.7041	NaN	1	1	Median	0.63232	0.59327	NaN	1	0	Median	1.0539	1.1181	NaN	1	0	Median	1291000000	661480000	629570000	170880000	77512000	93367000	571880000	274590000	297280000	372330000	237110000	135210000	175960000	72259000	103700000	37659	1039	35438	230915;230916;230917;230918;230919	310655;310656;310657;310658;310659;310660;310661	310655			7	
MVMTVFACLMGR	0	Oxidation (M)	1430.6543	0.65425407	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	83.684	75.04	2	4.1725E-13	39393	160513_QHF_FH_JSI12Kac_6	132.01	125.71			1.5385	1.6432	29.463	5	1	Median	NaN	NaN	NaN	0	0	Median	2.1001	2.4627	NaN	1	1	Median	1.4877	1.4374	38.565	2	0	Median	1.5043	1.616	2.363	2	0	Median	207850000	72216000	135630000	0	0	0	68394000	20707000	47687000	61375000	23965000	37411000	78081000	27544000	50537000	37660	1039	35438	230920;230921;230922;230923;230924;230925	310662;310663;310664;310665;310666;310667;310668	310665		656;657;658	4	
MVMTVFACLMGR	0	3 Oxidation (M)	1462.6441	0.64408332	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	3	0	By MS/MS	By MS/MS		By MS/MS	15.6	0.49								4	6	1	4		5	70.598	60.667	2	0.00025922	31641	160513_QHF_FH_JSI12Kac_6	75.378	69.138			0.98613	1.0935	63.401	8	2	Median	NaN	NaN	NaN	0	0	Median	0.62469	0.7382	20.612	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3344	1.49	59.317	5	1	Median	54966000	28446000	26520000	0	0	0	18749000	12379000	6369300	0	0	0	36218000	16067000	20151000	37661	1039	35438	230926;230927;230928;230929;230930;230931;230932;230933;230934;230935	310669;310670;310671;310672;310673;310674;310675	310671		656;657;658	7	
MVMYLNMLR	0	Unmodified	1169.5759	0.5759274	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	6.6		1							2		1	1	1	81.426	76.071	2	0.00040344	41232	160513_QHF_FH_JSI10Kac_6	97.473	66.244			1.0329	1.2174	29.122	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0329	1.2174	NaN	1	0	Median	0.77607	0.73985	NaN	1	0	Median	1.1728	1.2327	NaN	1	1	Median	322360000	168060000	154300000	0	0	0	227160000	117860000	109300000	81663000	44138000	37525000	13534000	6063100	7470900	37662	4164	35439	230936;230937;230938	310676;310677;310678;310679;310680	310680			5	
MVNDAEK	1	Oxidation (M)	821.35892	0.35891821	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	3									2		1		4.5111	4.094	2	0.030288	2119	160511_QHF_FH_JSI11i_1	57.281	33.309			1.1318	1.0831	17.17	3	0	Median	1.1513	0.93827	20.305	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1318	1.1045	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	289620000	169680000	119940000	118780000	54933000	63850000	0	0	0	170830000	114740000	56089000	0	0	0	37663	982	35440	230939;230940;230941	310681;310682	310681		558	2	
MVNDAEK	1	Unmodified	805.364	0.36400359	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84	4	5	3			4				3	5	4	4	5.8345	3.9542	2	0.0016531	2233	160513_QHF_FH_JSI11Kac_3	98.997	69.848			0.90282	0.98225	46.634	14	5	Median	0.9105	0.77441	24.021	3	0	Median	0.75282	0.87719	38.153	4	2	Median	0.74984	0.73791	49.408	3	1	Plateau	1.218	1.2944	65.215	4	2	Median	26353000000	13266000000	13087000000	5445400000	2623400000	2822000000	7173300000	4319600000	2853700000	6690800000	2938900000	3751900000	7043500000	3384200000	3659400000	37664	982	35440	230942;230943;230944;230945;230946;230947;230948;230949;230950;230951;230952;230953;230954;230955;230956;230957	310683;310684;310685;310686;310687;310688;310689;310690;310691;310692;310693;310694;310695;310696;310697;310698;310699;310700;310701;310702;310703;310704;310705;310706	310693			24	
MVNDAEKFAEEDK	2	Acetyl (K);Oxidation (M)	1582.6821	0.68210284	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	1	1			By MS/MS		13	0						3						3		47.279	37.893	2	0.00016537	21295	160513_QHF_FH_JSI11Kac_3	99.522	80.742			0.088266	0.085592	31	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.088266	0.085592	31	2	2	Median	NaN	NaN	NaN	0	0	Median	9851100	7647200	2204000	0	0	0	0	0	0	9851100	7647200	2204000	0	0	0	37665	982	35441	230958;230959;230960	310707;310708;310709	310709	768	558	3	
MVNDAEKFAEEDK	2	Acetyl (K)	1566.6872	0.68718822	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	53.212	43.866	2	0.0002553	23611	160513_QHF_FH_JSI12Kac_3	97.911	82.939			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5809600	2245900	3563700	0	0	0	1562900	0	1562900	2000800	0	2000800	2245900	2245900	0	37666	982	35441	230961;230962;230963	310710;310711;310712;310713	310712	768		4	
MVNDAEPDTK	1	Unmodified	1118.4914	0.49138895	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.759	11.355	2	0.0006401	9197	160511_QHF_FH_JSI12i_1	85.744	73.537			0.66245	0.62921	36.641	4	4	Median	0.60576	0.50367	NaN	1	1	Median	0.72446	0.85312	NaN	1	1	Median	0.42132	0.39463	NaN	1	1	Median	0.76348	0.78603	NaN	1	1	Median	365350000	175880000	189480000	87493000	34871000	52622000	89352000	47140000	42212000	70774000	42352000	28422000	117740000	51515000	66220000	37667	5042	35442	230964;230965;230966;230967	310714;310715;310716;310717	310715			4	
MVNDAEPDTKK	2	Unmodified	1246.5864	0.58635197	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			9.0782	8.8426	2	0.00063519	6672	160511_QHF_FH_JSI10i_1	82.417	69.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37668	5042	35443	230968	310718	310718			1	
MVNHFIAEFK	1	Oxidation (M)	1250.6118	0.61177885	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.44		9	14						13	10	9	8	9	49.519	45.41	2;3	2.8091E-07	24087	160513_QHF_FH_JSI9Kac_6	114.4	83.714			0.2541	0.26485	191.87	35	33	Median	3.8836	3.3676	199.43	9	9	Median	0.22457	0.26485	177.69	9	8	Median	0.14609	0.14076	194.42	8	7	Median	0.2541	0.25442	199.56	9	9	Median	4147000000	2270300000	1876800000	753060000	253310000	499750000	914490000	473780000	440710000	1564900000	997850000	567030000	914610000	545320000	369280000	37669	985	35444	230969;230970;230971;230972;230973;230974;230975;230976;230977;230978;230979;230980;230981;230982;230983;230984;230985;230986;230987;230988;230989;230990;230991;230992;230993;230994;230995;230996;230997;230998;230999;231000;231001;231002;231003;231004	310719;310720;310721;310722;310723;310724;310725;310726;310727;310728;310729;310730;310731;310732;310733;310734;310735;310736;310737;310738;310739;310740;310741;310742;310743;310744;310745;310746;310747;310748;310749;310750;310751;310752;310753;310754;310755;310756;310757;310758	310747		564	40	
MVNHFIAEFK	1	Unmodified	1234.6169	0.61686423	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.29		14	16						14	12	11	12	9	54.226	50.804	2;3	6.5809E-19	27043	160513_QHF_FH_JSI9Kac_6	163.77	129.51			2.1073	1.982	224.61	43	41	Median	3.3124	2.8032	213.53	11	11	Median	5.4905	6.6971	242.59	11	11	Median	0.90923	0.86237	218.19	12	12	Median	1.0061	1.0567	257.34	9	7	Median	52351000000	21612000000	30739000000	6719700000	3354700000	3365000000	10264000000	5347300000	4916900000	20994000000	8069900000	12924000000	14373000000	4839800000	9533400000	37670	985	35444	231005;231006;231007;231008;231009;231010;231011;231012;231013;231014;231015;231016;231017;231018;231019;231020;231021;231022;231023;231024;231025;231026;231027;231028;231029;231030;231031;231032;231033;231034;231035;231036;231037;231038;231039;231040;231041;231042;231043;231044;231045;231046;231047;231048	310759;310760;310761;310762;310763;310764;310765;310766;310767;310768;310769;310770;310771;310772;310773;310774;310775;310776;310777;310778;310779;310780;310781;310782;310783;310784;310785;310786;310787;310788;310789;310790;310791;310792;310793;310794;310795;310796;310797;310798;310799;310800;310801;310802;310803;310804;310805;310806;310807;310808;310809;310810;310811;310812;310813;310814;310815;310816;310817;310818;310819;310820;310821;310822;310823;310824;310825;310826;310827;310828;310829;310830;310831;310832;310833;310834;310835;310836;310837;310838;310839;310840;310841;310842;310843;310844;310845;310846	310825			88	
MVNHFIAEFKR	1	Acetyl (K);Oxidation (M)	1448.7235	0.72345457	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	16	0									8		1	3	4	64.596	55.03	2;3	3.4586E-05	29922	160513_QHF_FH_JSI11Kac_6	100.88	88.831			0.27427	0.26405	221.52	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13107	0.12754	102.91	2	2	Median	0.49784	0.52451	260.33	3	3	Median	152740000	74030000	78710000	0	0	0	26398000	0	26398000	90186000	56520000	33666000	36157000	17510000	18646000	37671	985	35445	231049;231050;231051;231052;231053;231054;231055;231056	310847;310848;310849;310850;310851;310852;310853;310854	310848	781	564	8	
MVNHFIAEFKR	1	Acetyl (K)	1432.7285	0.72853995	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	1	4	4	4	68.445	59.408	2;3	8.8911E-18	32273	160513_QHF_FH_JSI11Kac_6	168.74	154.53			0.36816	0.31728	237.59	11	10	Median	0.36816	0.31728	NaN	1	1	Median	0.93071	1.1187	235.16	4	4	Median	0.55739	0.54275	304.16	4	4	Median	0.52808	0.55571	323.41	2	1	Median	1165500000	743200000	422290000	4559300	3754000	805330	386860000	196190000	190670000	625030000	444660000	180370000	149040000	98598000	50440000	37672	985	35445	231057;231058;231059;231060;231061;231062;231063;231064;231065;231066;231067;231068;231069	310855;310856;310857;310858;310859;310860;310861;310862;310863;310864;310865;310866;310867	310857	781		13	
MVNHFIAEFKR	1	Unmodified	1390.718	0.71797526	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			51.688	43.08	3	0.0009953	23745	160513_QHF_FH_JSI10Kac_6	67.456	54.449			0.34705	0.39676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34705	0.39676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4870800	4187200	683650	0	0	0	4870800	4187200	683650	0	0	0	0	0	0	37673	985	35445	231070	310868	310868			1	
MVNIFTDLYYLTFVQELNK	1	Unmodified	2350.1919	0.19190646	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.33	94.609	3	9.6389E-05	55721	160513_QHF_FH_JSI10Kac_6	104.61	96.115			2.2111	2.5627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2111	2.5627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51310000	16627000	34683000	0	0	0	51310000	16627000	34683000	0	0	0	0	0	0	37674	2515	35446	231071	310869	310869			1	
MVNLLQIVR	0	Unmodified	1084.6427	0.64268505	526	O75438	NDUFB1	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	2	4	84.894	84.45	2	0.0003448	73278	160511_QHF_FH_JSI12i_3	91.906	78.327			0.81283	0.7478	53.11	7	7	Median	1.1364	0.99649	NaN	1	1	Median	0.57417	0.66704	NaN	1	1	Median	1.1464	1.0553	48.706	2	2	Median	1.591	1.0578	79.733	3	3	Plateau	145970000	69444000	76522000	17754000	10210000	7543700	10577000	5631100	4946200	41232000	19424000	21809000	76403000	34179000	42224000	37675	526	35447	231072;231073;231074;231075;231076;231077;231078;231079	310870;310871;310872;310873;310874;310875;310876;310877	310877			8	
MVNPTTVLESPHSLPAK	1	Unmodified	1819.9502	0.95021962	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	64.206	63.435	3	9.6507E-12	54556	160511_QHF_FH_JSI12i_2	151.48	140.85			1.2805	1.1417	34.455	7	0	Median	2.0461	1.7305	58.818	2	0	Median	0.7893	0.98246	NaN	1	0	Median	1.3534	1.3401	28.229	2	0	Median	1.0861	1.1715	15.511	2	0	Median	1848600000	875770000	972880000	311770000	116970000	194800000	374960000	205230000	169730000	702620000	318810000	383820000	459280000	234760000	224530000	37676	3290	35448	231080;231081;231082;231083;231084;231085;231086	310878;310879;310880;310881;310882;310883;310884;310885;310886;310887;310888;310889;310890;310891;310892;310893;310894;310895;310896;310897;310898	310881			21	
MVNPTVFFDIAVDGEPLGR	0	Acetyl (Protein N-term)	2118.0456	0.045576569	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.92	7	3	3						2	6	5	2	2	103.55	102.41	2;3	2.7359E-94	94526	160511_QHF_FH_JSI11i_1	292.8	266.79			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37677	2040	35449	231087;231088;231089;231090;231091;231092;231093;231094;231095;231096;231097;231098;231099;231100;231101	310899;310900;310901;310902;310903;310904;310905;310906;310907;310908;310909;310910;310911;310912;310913	310900			15	
MVNPTVFFDIAVDGEPLGR	0	Acetyl (Protein N-term);Oxidation (M)	2134.0405	0.040491191	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	103.08	102.98	2	1.5846E-26	91108	160511_QHF_FH_JSI9i_1	212.11	172.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37678	2040	35449	231102;231103;231104;231105;231106;231107	310914;310915;310916;310917;310918;310919	310917		1706	6	
MVNPTVFFDIAVDGEPLGR	0	Unmodified	2076.035	0.035011883	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	102.21	102.09	3	0.029373	88014	160511_QHF_FH_JSI12i_2	39.905	37.513			1.5365	1.5057	10.108	2	0	Median	1.8894	1.6173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2495	1.4019	NaN	1	0	Median	197000000	77120000	119870000	80442000	30151000	50291000	0	0	0	0	0	0	116550000	46970000	69583000	37679	2040	35449	231108;231109	310920	310920			0	
MVNSNLASVEELK	1	Unmodified	1432.7232	0.7231798	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	3.68	7	3					1			2	5	2	2	56.548	55.858	2	4.3981E-22	49003	160511_QHF_FH_JSI9i_2	174.24	153.37			0.91993	0.90156	44.584	10	8	Median	1.0686	0.90156	9.3012	2	0	Median	0.63316	0.74408	58.361	4	4	Median	0.84738	0.82331	43.381	2	2	Median	0.82602	0.86646	74.772	2	2	Median	1782600000	989820000	792760000	339670000	165240000	174430000	614150000	374050000	240100000	551330000	316090000	235240000	277430000	134440000	142990000	37680	903	35450	231110;231111;231112;231113;231114;231115;231116;231117;231118;231119;231120	310921;310922;310923;310924;310925;310926;310927;310928;310929;310930;310931;310932;310933	310931			13	
MVNYIQMK	1	Unmodified	1025.5038	0.50380831	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	43.849	42.914	2	0.0069479	36827	160511_QHF_FH_JSI11i_2	70.268	53.171			1.8818	2.0146	54.916	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8469	2.9705	NaN	1	1	Median	1.2438	1.3663	NaN	1	1	Median	140420000	53198000	87218000	0	0	0	0	0	0	77285000	24086000	53199000	63131000	29112000	34019000	37681	3053	35451	231121;231122	310934;310935	310935			2	
MVPAGMGAGLER	0	Unmodified	1187.5791	0.57909852	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	46.214	45.413	2	3.2869E-05	39544	160511_QHF_FH_JSI9i_2	105.98	85.455			1.0779	1.0684	10.225	11	0	Median	1.3087	1.079	2.5585	2	0	Median	0.81004	0.9632	7.0274	3	0	Median	1.0803	1.0684	13.124	3	0	Median	1.0779	1.1226	8.7246	3	0	Median	8660800000	4047700000	4613000000	1522000000	634340000	887640000	1866100000	1015800000	850310000	2880500000	1445700000	1434700000	2392200000	951870000	1440400000	37682	1765	35452	231123;231124;231125;231126;231127;231128;231129;231130;231131;231132;231133	310936;310937;310938;310939;310940;310941;310942;310943;310944;310945;310946;310947;310948;310949;310950;310951;310952;310953;310954	310946			19	
MVPAGMGAGLER	0	Oxidation (M)	1203.574	0.57401314	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.6		7	1				1	2		3	2	2	4	36.388	33.031	2	0.0023723	33398	160511_QHF_FH_JSI12i_2	61.65	56.685			1.0518	1.0438	39.834	11	0	Median	1.4715	1.2497	20.961	3	0	Plateau	1.0324	1.2765	44.561	2	0	Median	1.0585	1.0518	1.0689	2	0	Median	0.9208	0.97231	57.494	4	0	Median	549860000	239520000	310340000	85948000	29407000	56541000	160200000	67138000	93065000	188630000	78153000	110480000	115080000	64826000	50251000	37683	1765	35452	231134;231135;231136;231137;231138;231139;231140;231141;231142;231143;231144	310955;310956;310957;310958;310959;310960;310961;310962;310963;310964;310965;310966	310957		1458;1459	12	
MVPDFYVDSIADLLPALQG	0	Unmodified	2063.0285	0.028529522	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5									4	3	3	103.87	103.8	2;3	2.6327E-09	94593	160511_QHF_FH_JSI10i_1	121.02	115.53			0.87757	0.95271	20.26	10	1	Median	NaN	NaN	NaN	0	0	Median	0.87757	1.008	8.4322	4	0	Median	0.77535	0.75549	23.95	3	0	Plateau	0.78767	0.85212	26.184	3	1	Median	168870000	87979000	80891000	0	0	0	84016000	43773000	40244000	37533000	17863000	19671000	47321000	26344000	20977000	37684	23	35453	231145;231146;231147;231148;231149;231150;231151;231152;231153;231154	310967;310968;310969;310970;310971;310972;310973;310974;310975;310976	310972			10	
MVPFQVPEILR	0	Unmodified	1327.7322	0.73222834	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	97.179	96.864	2	0.00029981	85010	160511_QHF_FH_JSI11i_2	76.465	62.695			0.76701	0.8214	8.9205	4	2	Median	NaN	NaN	NaN	0	0	Median	0.76533	0.9478	NaN	1	0	Median	0.78997	0.81602	NaN	1	0	Median	0.73559	0.79635	5.3087	2	2	Median	130910000	69758000	61156000	0	0	0	30736000	18003000	12733000	34960000	13839000	21122000	65217000	37916000	27301000	37685	3221	35454	231155;231156;231157;231158	310977;310978;310979;310980;310981;310982;310983	310980			7	
MVPGSEGPAR	0	Unmodified	999.48076	0.48076468	3207	Q71SY5	MED25	Mediator of RNA polymerase II transcription subunit 25	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		16.249	15.994	2	0.017273	12840	160511_QHF_FH_JSI11i_2	50.04	31.31			0.13937	0.13772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13937	0.13772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65608000	55317000	10291000	0	0	0	0	0	0	65608000	55317000	10291000	0	0	0	37686	3207	35455	231159	310984	310984			1	
MVPLLNK	1	Unmodified	813.47825	0.47824549	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	49.167	48.018	2	0.0091535	41779	160511_QHF_FH_JSI9i_2	80.377	29.341			1.0121	1.0754	25.232	6	1	Median	1.0959	0.93723	NaN	1	0	Median	0.90259	1.0754	7.2215	2	0	Median	0.81129	0.85	NaN	1	0	Median	1.303	1.4298	28.821	2	1	Median	3152500000	1711500000	1441000000	335650000	179410000	156240000	955190000	537250000	417940000	1073200000	612830000	460400000	788450000	382060000	406390000	37687	1065	35456	231160;231161;231162;231163;231164;231165	310985;310986;310987;310988;310989;310990;310991;310992	310988			8	
MVPPVQVSPLIK	1	Unmodified	1306.7683	0.7682795	1879	P56385	ATP5I	ATP synthase subunit e, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	76.009	75.382	2;3	0.00011601	65281	160511_QHF_FH_JSI12i_2	83	67.619			0.92635	0.97224	16.259	9	1	Median	1.21	1.0102	5.415	2	0	Median	0.7877	0.97029	0.82536	2	0	Median	0.92709	0.93869	21.693	3	1	Plateau	0.99921	1.0816	6.9441	2	0	Median	765430000	400330000	365100000	119540000	57526000	62015000	185090000	105130000	79960000	272000000	141460000	130530000	188800000	96207000	92590000	37688	1879	35457	231166;231167;231168;231169;231170;231171;231172;231173;231174	310993;310994;310995;310996;310997;310998;310999;311000;311001;311002;311003;311004;311005;311006;311007;311008;311009;311010;311011;311012;311013;311014;311015;311016;311017;311018;311019;311020;311021	311000			29	
MVPTSDK	1	Unmodified	776.37384	0.37383999	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59	6	5	3			1	2			3	6	4	4	10.797	8.9937	2	0.0089406	7253	160511_QHF_FH_JSI11i_2	81.297	16.52			0.46796	0.46275	160.23	17	14	Median	0.5492	0.46275	160.36	3	3	Median	0.34144	0.4085	188.42	6	5	Median	0.32675	0.31047	152.3	4	2	Median	0.34371	0.35098	148.72	4	4	Median	37387000000	20095000000	17291000000	11008000000	4404400000	6603200000	8358800000	5440000000	2918800000	6759700000	4312500000	2447200000	11261000000	5938500000	5322100000	37689	1033	35458	231175;231176;231177;231178;231179;231180;231181;231182;231183;231184;231185;231186;231187;231188;231189;231190;231191	311022;311023;311024;311025;311026;311027;311028;311029;311030;311031;311032;311033;311034;311035;311036;311037;311038;311039	311034			18	
MVPTSDK	1	Oxidation (M)	792.36875	0.36875462	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	8.7484	8.3476	2	0.02694	7310	160511_QHF_FH_JSI12i_2	60.788	16.177			1.2468	1.3141	21.522	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5538	1.5301	NaN	1	1	Median	1.0005	1.1286	NaN	1	0	Median	348330000	150390000	197930000	0	0	0	0	0	0	234480000	87742000	146740000	113850000	62653000	51194000	37690	1033	35458	231192;231193	311040;311041	311041			2	
MVPTSDKGR	1	Unmodified	989.49641	0.49641475	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		7.6386	7.6386	2;3	0.0037237	5284	160511_QHF_FH_JSI11i_3	85.064	64.509			0.29196	0.27998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29196	0.27998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	308770000	219840000	88934000	0	0	0	0	0	0	308770000	219840000	88934000	0	0	0	37691	1033	35459	231194;231195	311042;311043	311043			2	
MVPVSVQQSLAAYNQR	0	Unmodified	1789.9145	0.91450282	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		8	10							6	3	4	5	66.841	66.01	2;3	5.928E-22	57990	160511_QHF_FH_JSI9i_2	178.81	157.94			1.0291	0.98402	40.098	17	7	Median	1.4764	1.2329	32.633	5	2	Median	0.99483	1.1813	13.877	3	0	Median	2.5502	2.3879	60.385	4	1	Linear	0.83826	0.90186	49.593	5	4	Median	1129000000	555090000	573900000	411780000	204440000	207340000	208200000	114030000	94168000	273620000	117820000	155800000	235400000	118810000	116590000	37692	3766	35460	231196;231197;231198;231199;231200;231201;231202;231203;231204;231205;231206;231207;231208;231209;231210;231211;231212;231213	311044;311045;311046;311047;311048;311049;311050;311051;311052;311053;311054;311055;311056;311057;311058;311059;311060;311061;311062;311063	311054			20	
MVQDGDFVR	0	Unmodified	1065.4913	0.49132937	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	2	3	30.758	29.979	2	4.4485E-06	26754	160511_QHF_FH_JSI10i_1	119.27	100.9			1.0171	1.0242	34.245	9	2	Median	1.3419	1.1141	13.025	2	0	Median	0.95401	1.1294	64.939	3	2	Median	0.97591	0.97425	7.0653	2	0	Median	0.94477	1.0223	12.681	2	0	Median	2451600000	1373000000	1078700000	458710000	233930000	224780000	706190000	405280000	300910000	656880000	394400000	262480000	629850000	339360000	290480000	37693	3973	35461	231214;231215;231216;231217;231218;231219;231220;231221;231222;231223	311064;311065;311066;311067;311068;311069;311070;311071;311072;311073;311074;311075;311076;311077;311078;311079	311071			16	
MVQEAEK	1	Unmodified	833.3953	0.39530372	985;954	P0DMV9;P0DMV8;P11142	HSPA1B;HSPA1A;HSPA8	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.29	8	8	6		1	6	3			6	10	8	8	6.9123	4.2881	2	0.0042617	2754	160513_QHF_FH_JSI12Kac_3	91.906	67.934			0.93582	0.97204	159.39	32	29	Median	1.1079	0.96611	185.44	6	6	Median	1.3862	1.6541	152.18	10	9	Median	0.73381	0.70334	180.55	8	7	Median	1.6503	1.8145	159.06	8	7	Median	98671000000	51075000000	47596000000	21309000000	9478200000	11831000000	26862000000	14184000000	12678000000	23610000000	13062000000	10548000000	26889000000	14351000000	12538000000	37694	954;985	35462	231224;231225;231226;231227;231228;231229;231230;231231;231232;231233;231234;231235;231236;231237;231238;231239;231240;231241;231242;231243;231244;231245;231246;231247;231248;231249;231250;231251;231252;231253;231254;231255	311080;311081;311082;311083;311084;311085;311086;311087;311088;311089;311090;311091;311092;311093;311094;311095;311096;311097;311098;311099;311100;311101;311102;311103;311104;311105;311106;311107;311108;311109;311110;311111;311112	311105			33	
MVQEAEK	1	Oxidation (M)	849.39022	0.39021834	985;954	P0DMV9;P0DMV8;P11142	HSPA1B;HSPA1A;HSPA8	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.49	14	4	1		2	5	2			5	6	7	10	5.8338	3.0466	2	0.0036446	1883	160513_QHF_FH_JSI11Kac_3	97.068	67.729			0.81012	0.81867	90.192	26	12	Median	1.2119	0.98674	155.5	4	2	Median	0.55347	0.66503	86.602	5	3	Median	1.0033	0.9877	75.174	7	2	Median	0.65577	0.70531	55.152	10	5	Median	14074000000	7097000000	6977000000	2363800000	867200000	1496600000	3425100000	1946100000	1478900000	3437600000	1446000000	1991600000	4847500000	2837600000	2009900000	37695	954;985	35462	231256;231257;231258;231259;231260;231261;231262;231263;231264;231265;231266;231267;231268;231269;231270;231271;231272;231273;231274;231275;231276;231277;231278;231279;231280;231281;231282;231283	311113;311114;311115;311116;311117;311118;311119;311120;311121;311122;311123;311124;311125;311126;311127;311128;311129;311130;311131;311132;311133;311134;311135	311123		529	23	
MVQEAEKYK	2	Acetyl (K);Oxidation (M)	1182.5591	0.55907458	985;954	P0DMV9;P0DMV8;P11142	HSPA1B;HSPA1A;HSPA8	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein	no	no	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	0.499						11	10			1	8	7	5	24.198	15.771	2	4.4664E-11	5503	160513_QHF_FH_JSI9Kac_3	151.44	134.2			2.1217	2.0475	325.41	16	15	Median	1.2062	0.94755	NaN	1	0	Median	0.50598	0.59775	351.31	6	6	Median	14.943	14.605	360.55	5	5	Median	0.64008	0.6925	376.82	4	4	Median	194490000	107470000	87020000	28591000	14207000	14384000	44828000	22452000	22376000	83018000	51509000	31509000	38054000	19302000	18751000	37696	954;985	35463	231284;231285;231286;231287;231288;231289;231290;231291;231292;231293;231294;231295;231296;231297;231298;231299;231300;231301;231302;231303;231304	311136;311137;311138;311139;311140;311141;311142;311143;311144;311145;311146;311147;311148;311149;311150;311151;311152;311153;311154;311155;311156;311157	311147	720	529	22	
MVQEAEKYK	2	Acetyl (K)	1166.5642	0.56415996	985;954	P0DMV9;P0DMV8;P11142	HSPA1B;HSPA1A;HSPA8	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.64						6	5	1			4	4	4	30.314	21.54	2	3.4327E-13	13277	160513_QHF_FH_JSI12Kac_4	163.32	150.28			0.026416	0.030297	416.41	8	8	Median	NaN	NaN	NaN	0	0	Median	55.292	66.542	496.2	3	3	Plateau	0.0027374	0.0027037	459.37	3	3	Plateau	0.77229	0.84672	492	2	2	Median	540560000	307690000	232870000	0	0	0	112940000	66499000	46436000	284930000	172300000	112630000	142690000	68890000	73804000	37697	954;985	35463	231305;231306;231307;231308;231309;231310;231311;231312;231313;231314;231315;231316	311158;311159;311160;311161;311162;311163;311164;311165;311166;311167;311168;311169	311166	720		12	
MVQFEENGR	0	Unmodified	1108.4971	0.49714303	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	25.44	24.71	2	0.00029471	20670	160511_QHF_FH_JSI11i_2	94.302	57.282			0.49562	0.52672	39.668	4	3	Median	1.1336	0.95302	NaN	1	0	Median	0.43458	0.49301	NaN	1	1	Median	0.56523	0.56274	NaN	1	1	Median	0.33248	0.3694	NaN	1	1	Median	118930000	72278000	46655000	23109000	10755000	12354000	22397000	16002000	6394900	42880000	25532000	17348000	30547000	19990000	10557000	37698	1655	35464	231317;231318;231319;231320	311170;311171;311172;311173;311174	311174			5	
MVQFEENGRK	1	Oxidation (M)	1252.587	0.58702067	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	1	4	2	16.295	16.036	2;3	0.0052075	9758	160511_QHF_FH_JSI11i_3	48.998	39.565			1.13	1.0418	84.323	6	3	Median	1.8071	1.5471	NaN	1	0	Median	0.66091	0.8201	NaN	1	0	Median	1.0673	1.0021	88.079	3	3	Median	2.9862	2.8831	NaN	1	0	Median	454300000	243640000	210660000	80424000	29686000	50738000	110810000	73324000	37487000	218680000	128000000	90680000	44387000	12631000	31756000	37699	1655	35465	231321;231322;231323;231324;231325;231326;231327;231328	311175;311176;311177;311178;311179;311180	311175		1337	6	
MVQFEENGRK	1	Unmodified	1236.5921	0.59210605	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		12	9						6	5	8	9	5	18.975	16.838	2;3	3.8879E-08	13790	160511_QHF_FH_JSI10i_3	99.973	84.344			0.55965	0.63815	64.552	27	24	Median	1.0983	0.91033	91.071	5	4	Median	0.73745	0.84631	54.149	8	7	Median	0.52555	0.49257	68.679	9	9	Median	0.47046	0.47654	54.149	5	4	Median	8111800000	4542000000	3569800000	1218500000	603340000	615170000	1644500000	929830000	714670000	4177000000	2333400000	1843700000	1071700000	675520000	396220000	37700	1655	35465	231329;231330;231331;231332;231333;231334;231335;231336;231337;231338;231339;231340;231341;231342;231343;231344;231345;231346;231347;231348;231349;231350;231351;231352;231353;231354;231355	311181;311182;311183;311184;311185;311186;311187;311188;311189;311190;311191;311192;311193;311194;311195;311196;311197;311198;311199;311200;311201;311202;311203;311204;311205;311206;311207;311208;311209	311187			28	
MVQFHFTNK	1	Unmodified	1150.5593	0.55934935	3207	Q71SY5	MED25	Mediator of RNA polymerase II transcription subunit 25	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	49.863	40.142	3	0.041762	20989	160513_QHF_FH_JSI12Kac_6	27.428	20.3			0.67476	0.73707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67476	0.73707	NaN	1	1	Median	5531700	2731500	2800200	0	0	0	0	0	0	0	0	0	5531700	2731500	2800200	37701	3207	35466	231356	311210	311210			1	
MVQLNEEK	1	Unmodified	989.48518	0.48518136	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		20.452	20.328	2	0.0092405	17462	160511_QHF_FH_JSI11i_1	56.378	26.303			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37702	2574	35467	231357	311211	311211			1	
MVQQLQEDVDMEDAP	0	Unmodified	1746.7441	0.74405117	5291	Q9UHA3	RSL24D1	Probable ribosome biogenesis protein RLP24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	66.136	65.607	2	0.001001	58217	160511_QHF_FH_JSI9i_1	79.974	76.301			1.1413	0.99147	53.425	6	6	Median	1.2645	1.0051	NaN	1	1	Median	1.0224	1.1843	86.614	2	2	Median	1.374	1.3116	41.497	2	2	Median	0.54065	0.56915	NaN	1	1	Median	178280000	87452000	90832000	25513000	8477400	17035000	54728000	27749000	26979000	57183000	22169000	35014000	40861000	29057000	11804000	37703	5291	35468	231358;231359;231360;231361;231362;231363	311212;311213;311214;311215;311216;311217	311217			6	
MVQQSDLGQYVTFLR	0	Unmodified	1783.8927	0.89270474	4730	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	88.041	87.38	2	1.2842E-06	75461	160511_QHF_FH_JSI12i_2	128.85	99.103			1.0969	1.0575	23.492	6	3	Median	1.073	0.91913	NaN	1	0	Median	0.99532	1.1729	35.878	2	1	Median	1.3974	1.411	NaN	1	1	Median	0.96079	1.0515	20.631	2	1	Median	107300000	49545000	57758000	21038000	8605700	12433000	33816000	16924000	16892000	18863000	7345400	11518000	33585000	16670000	16915000	37704	4730	35469	231364;231365;231366;231367;231368;231369	311218;311219;311220;311221;311222;311223	311219			6	
MVQSSPPISGEDNK	1	Unmodified	1487.6926	0.69260795	2822	Q3V6T2	CCDC88A	Girdin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			61.681	60.772	2	0.017238	53381	160511_QHF_FH_JSI9i_2	51.445	28.566			4.007	4.9042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.007	4.9042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114810000	2610000	112200000	63203000	0	63203000	51607000	2610000	48997000	0	0	0	0	0	0	37705	2822	35470	231370;231371	311224;311225	311224			2	
MVQVHELGCEGISK	1	Unmodified	1585.7592	0.75924773	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	40.411	39.496	2	3.4456E-06	33785	160511_QHF_FH_JSI11i_2	131.37	111.61			0.79795	0.8485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79795	0.8485	NaN	1	1	Median	19864000	18529000	1335800	0	0	0	0	0	0	12269000	12269000	0	7594900	6259100	1335800	37706	2674	35471	231372;231373;231374	311226;311227;311228	311227			3	
MVRPNQDGTLIASCSNDQTVR	0	Unmodified	2361.1165	0.11652646	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			40.125	38.95	3	9.4223E-13	31788	160511_QHF_FH_JSI9i_3	114.46	105.75			1.2087	1.1559	18.236	3	1	Median	1.2826	1.0699	10.925	2	1	Median	1.1717	1.4243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120130000	53818000	66309000	83143000	34765000	48378000	36984000	19053000	17931000	0	0	0	0	0	0	37707	1553	35472	231375;231376;231377	311229;311230;311231;311232	311230			4	
MVSAAFMK	1	Unmodified	883.42958	0.42958073	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.75	5.93		2	1						1		2	2		42.752	40.241	2	0.0064747	35355	160511_QHF_FH_JSI11i_3	71.342	49.796			2.7077	3.0271	138.4	4	4	Median	NaN	NaN	NaN	0	0	Median	4.6949	5.6136	76.73	2	2	Median	1.0113	0.99357	146.94	2	2	Median	NaN	NaN	NaN	0	0	Median	813220000	316770000	496450000	0	0	0	271740000	94615000	177120000	541480000	222150000	319330000	0	0	0	37708	1254	35473	231378;231379;231380;231381	311233;311234;311235;311236	311233			4	
MVSAEISENRK	1	Unmodified	1262.6289	0.62888548	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		16.392	15.887	3	0.0005098	13199	160511_QHF_FH_JSI11i_3	47.712	32.325			0.54751	0.57117	46.634	2	0	Median	NaN	NaN	NaN	0	0	Median	0.35699	0.41073	NaN	1	0	Median	0.8397	0.79428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111930000	72903000	39028000	0	0	0	51334000	42442000	8892700	60597000	30462000	30135000	0	0	0	37709	3061	35474	231382;231383	311237	311237			1	
MVSAVLNGMLDQSFR	0	Unmodified	1666.8171	0.81709696	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	4	4	4	90.448	90.014	2;3	1.6944E-18	78165	160511_QHF_FH_JSI12i_3	213.63	189.34			0.31549	0.30912	74.309	14	14	Median	0.36862	0.30912	7.2408	2	2	Median	0.37909	0.45924	104.29	4	4	Median	0.2194	0.22394	22.489	4	4	Median	0.26679	0.28066	49.041	4	4	Median	706390000	474000000	232390000	102750000	60601000	42145000	220550000	115360000	105190000	221010000	173290000	47712000	162080000	124740000	37347000	37710	2094	35475	231384;231385;231386;231387;231388;231389;231390;231391;231392;231393;231394;231395;231396;231397	311238;311239;311240;311241;311242;311243;311244;311245;311246;311247;311248;311249;311250;311251	311250			14	
MVSAVLNGMLDQSFR	0	Oxidation (M)	1682.812	0.81201158	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	70.485	70.187	2	0.0011162	60820	160511_QHF_FH_JSI12i_3	69.721	60.766			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37711	2094	35475	231398	311252	311252		1771	1	
MVSDINNGWQHLEQAEK	1	Unmodified	1997.9265	0.92652407	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.428	1	13	2							1	4	6	5	57.117	56.325	2;3	1.8387E-21	49736	160511_QHF_FH_JSI10i_2	212.87	194.28			0.77736	0.89582	118.14	12	12	Median	0.37993	0.32213	NaN	1	1	Median	0.55002	0.68126	102.98	2	2	Median	1.6054	1.504	126.65	5	5	Median	0.8719	0.92459	137.52	4	4	Median	2369400000	1112400000	1257000000	21883000	18205000	3678600	699080000	473220000	225870000	1034600000	396350000	638290000	613850000	224650000	389200000	37712	361	35476	231399;231400;231401;231402;231403;231404;231405;231406;231407;231408;231409;231410;231411;231412;231413;231414	311253;311254;311255;311256;311257;311258;311259;311260;311261;311262;311263;311264;311265;311266;311267;311268;311269	311267			17	
MVSEEEK	1	Unmodified	850.37423	0.37423392	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	6.6839	6.3347	2	0.0093035	4319	160511_QHF_FH_JSI12i_1	83.753	50.237			0.47319	0.49946	22.327	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47319	0.49946	22.327	2	2	Median	556700000	401280000	155420000	0	0	0	0	0	0	0	0	0	556700000	401280000	155420000	37713	4176	35477	231415;231416	311270;311271	311270			2	
MVSEEMEEQVHSIR	0	Unmodified	1702.7655	0.76545532	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	43.184	42.243	3	2.3916E-05	36119	160511_QHF_FH_JSI12i_2	100.54	95.837			1.3186	1.3939	17.618	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3186	1.6148	NaN	1	1	Median	1.4065	1.3939	NaN	1	0	Median	1.0228	1.1369	NaN	1	0	Median	219700000	92231000	127470000	0	0	0	58493000	25595000	32897000	87533000	37056000	50477000	73671000	29580000	44092000	37714	4300	35478	231417;231418;231419	311272;311273;311274;311275	311273			3	
MVSGFIPLKPTVK	2	Unmodified	1415.821	0.82104335	42	CON__ENSEMBL:ENSBTAP00000024146;P01023;P20742	A2M;PZP	Alpha-2-macroglobulin;Pregnancy zone protein	yes	no	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	64.472	63.577	3	0.030356	53274	160511_QHF_FH_JSI10i_3	37.013	24.245		+	0.37166	0.40254	24.45	2	2	Median	NaN	NaN	NaN	0	0	Median	0.40883	0.47851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33786	0.33863	NaN	1	1	Median	118710000	84279000	34426000	0	0	0	25496000	17736000	7759200	0	0	0	93210000	66543000	26667000	37715	42	35479	231420;231421	311276;311277	311276			2	
MVSGMVKHITGSYK	2	Acetyl (K)	1578.7898	0.78981958	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									4			4		58.437	48.714	2;3	9.6132E-07	26365	160513_QHF_FH_JSI11Kac_6	150.68	127.77			0.62048	0.58626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62048	0.58626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47657000	27349000	20308000	0	0	0	0	0	0	47657000	27349000	20308000	0	0	0	37716	2614	35480	231422;231423;231424;231425	311278;311279;311280;311281	311281	2580		4	
MVSHSELRK	1	Unmodified	1085.5652	0.56516301	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	11.191	11.236	3	0.053089	8819	160511_QHF_FH_JSI11i_3	13.592	8.896			0.98261	0.95422	2.5003	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0388	0.97124	NaN	1	0	Median	0.92949	0.9375	NaN	1	0	Median	392280000	199040000	193240000	0	0	0	0	0	0	216870000	110100000	106760000	175410000	88935000	86477000	37717	2083	35481	231426;231427	311282	311282			1	
MVSISNYPLSAALTCAK	1	Unmodified	1824.9114	0.91139127	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	85.442	84.559	2;3	6.5026E-11	74344	160511_QHF_FH_JSI11i_2	172.99	157.1			0.94969	0.92012	42.204	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94969	0.92012	NaN	1	1	Median	1.5187	1.7218	30.738	2	2	Median	35836000	13196000	22640000	0	0	0	0	0	0	14377000	5817900	8559400	21459000	7377800	14081000	37718	3916	35482	231428;231429;231430	311283;311284;311285	311285			3	
MVSSSTENNGPQTVWTGPWAPHMNSVHMNQLG	0	Unmodified	3493.5602	0.56017735	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		85.877	85.877	3	0.046388	76688	160511_QHF_FH_JSI11i_3	14.931	13.001			1.2113	1.1559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2113	1.1559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10863000	6863900	3999300	0	0	0	0	0	0	10863000	6863900	3999300	0	0	0	37719	489	35483	231431	311286	311286			1	
MVSSYVGENAEFER	0	Unmodified	1616.7141	0.71407167	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	47.773	46.942	2	8.391E-41	40377	160511_QHF_FH_JSI11i_2	248.42	222.31			0.98585	1.0319	25.817	8	1	Median	1.6117	1.3627	44.257	2	1	Median	0.82864	0.9965	14.38	2	0	Median	0.97038	0.97571	30.939	2	0	Median	0.95867	1.0157	7.1693	2	0	Median	1305600000	558470000	747150000	281300000	106630000	174670000	329160000	153330000	175830000	427600000	168920000	258670000	267560000	129580000	137980000	37720	1865	35484	231432;231433;231434;231435;231436;231437;231438;231439;231440	311287;311288;311289;311290;311291;311292;311293;311294;311295;311296;311297;311298;311299;311300;311301;311302	311300			16	
MVSVLPIFR	0	Unmodified	1060.6103	0.61032229	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	88.084	87.472	2	1.1164E-05	75835	160511_QHF_FH_JSI12i_3	111.01	100.59			0.96217	1.0016	19.421	8	0	Median	1.3394	1.1292	35.842	2	0	Median	0.84115	1.0016	4.9137	2	0	Median	1.0522	1.0157	28.914	2	0	Median	1.0445	1.0829	17.509	2	0	Median	293040000	130340000	162700000	60542000	25201000	35341000	66073000	33197000	32876000	83201000	37722000	45480000	83224000	34219000	49005000	37721	3588	35485	231441;231442;231443;231444;231445;231446;231447;231448	311303;311304;311305;311306;311307;311308;311309;311310;311311	311311			9	
MVTEDQSK	1	Unmodified	936.42225	0.42224675	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	2	3	2	6.5994	5.4307	2	0.00045421	3981	160511_QHF_FH_JSI11i_1	128.61	93.114			0.88546	0.87142	67.784	8	8	Median	0.62166	0.51507	NaN	1	1	Median	0.8145	0.96914	73.742	2	2	Median	1.2612	1.2142	82.938	3	3	Median	1.1121	1.1718	88.793	2	2	Median	1190100000	582230000	607840000	152080000	62024000	90057000	376890000	208950000	167940000	290580000	164580000	126000000	370520000	146670000	223850000	37722	5128	35486	231449;231450;231451;231452;231453;231454;231455;231456	311312;311313;311314;311315;311316;311317;311318;311319	311313			8	
MVTETEETQEK	1	Unmodified	1323.5864	0.58641154	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.949	12.526	2	9.8368E-10	10244	160511_QHF_FH_JSI12i_1	136.63	125.48			0.93287	0.9419	52.544	4	2	Median	0.56848	0.45998	NaN	1	1	Median	1.4057	1.6346	NaN	1	1	Median	1.0667	1.0345	NaN	1	0	Median	0.81587	0.85763	NaN	1	0	Median	206100000	111370000	94733000	49176000	35116000	14060000	48636000	19022000	29614000	45815000	21894000	23921000	62477000	35340000	27137000	37723	3061	35487	231457;231458;231459;231460	311320;311321;311322;311323	311321			4	
MVTGDNINTAR	0	Unmodified	1190.5714	0.5713706	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	3	1	20.44	19.913	2	2.2309E-09	17387	160511_QHF_FH_JSI12i_1	130.63	108.14			1.1916	1.2383	59.408	8	5	Median	1.2938	1.0838	78.504	2	2	Median	0.90686	1.0816	70.324	2	1	Median	1.2871	1.3173	82.135	3	2	Median	1.1032	1.164	NaN	1	0	Median	1109200000	524000000	585170000	183520000	90550000	92972000	208160000	114960000	93207000	499840000	215450000	284390000	217640000	103040000	114600000	37724	1239;1168;2177;2758	35488	231461;231462;231463;231464;231465;231466;231467;231468	311324;311325;311326;311327;311328;311329;311330;311331;311332;311333	311326			10	
MVTMVSVLEDLIGK	1	Unmodified	1533.8146	0.81463734	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	2	4	102.41	100.5	2	8.3528E-66	88944	160511_QHF_FH_JSI12i_2	234.72	210.63			1.133	1.0829	35.506	10	5	Median	1.441	1.2396	20.547	2	2	Median	0.51389	0.61682	44.896	2	1	Median	1.2965	1.2583	32.894	2	0	Median	1.133	1.1307	18.465	4	2	Median	712510000	358750000	353760000	84135000	33908000	50227000	54920000	33857000	21064000	148510000	65754000	82753000	424940000	225230000	199710000	37725	4136	35489	231469;231470;231471;231472;231473;231474;231475;231476;231477;231478	311334;311335;311336;311337;311338;311339;311340;311341;311342;311343;311344;311345;311346;311347	311337			14	
MVTPYANGWK	1	Unmodified	1165.559	0.559015	314	O43251	RBFOX2	RNA binding protein fox-1 homolog 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.3	47.902	2	0.01111	40994	160511_QHF_FH_JSI12i_2	47.198	35.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37726	314	35490	231479	311348	311348			1	
MVTSESK	1	Unmodified	780.36875	0.36875462	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	5.5992	5.21	2	0.0068663	3205	160511_QHF_FH_JSI12i_1	89.55	67.622			0.82497	0.8782	42.133	7	3	Median	0.76085	0.63974	62.643	2	1	Median	0.64868	0.77809	55.697	2	1	Median	1.1254	1.0969	NaN	1	0	Median	0.60819	0.67276	37.688	2	1	Median	8422600000	3906100000	4516600000	1821500000	859170000	962310000	2130500000	1045300000	1085200000	2258600000	1001400000	1257200000	2212100000	1000200000	1211900000	37727	793	35491	231480;231481;231482;231483;231484;231485;231486	311349;311350;311351;311352;311353;311354;311355;311356	311351			8	
MVTVEFADEVR	0	Unmodified	1294.6227	0.62273747	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.3	6.6		1							2	1		1	1	76.278	69.862	2	0.00095687	52091	160511_QHF_FH_JSI12i_2	86.898	54.964			1.1304	1.0735	6.6171	3	0	Median	1.1615	0.99458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1304	1.1347	NaN	1	0	Median	0.9325	1.0735	NaN	1	0	Median	158730000	82776000	75950000	55728000	27795000	27932000	0	0	0	36645000	16578000	20067000	66353000	38402000	27951000	37728	3965	35492	231487;231488;231489	311357;311358;311359;311360	311357			3	
MVVASSK	1	Unmodified	720.38401	0.38401075	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	9.4067	8.959	2	0.027924	6936	160511_QHF_FH_JSI10i_2	53.351	31.22			2.084	2.1001	75.782	5	2	Median	2.5081	2.138	NaN	1	0	Median	1.2493	1.5128	NaN	1	0	Median	2.084	2.1001	NaN	1	0	Median	0.89584	0.965	129.45	2	2	Median	1364300000	521140000	843120000	206080000	62918000	143160000	228150000	116250000	111900000	339140000	115480000	223660000	590900000	226490000	364410000	37729	1004	35493	231490;231491;231492;231493;231494	311361;311362;311363	311363			3	
MVVDAVMMLDDLLQLK	1	Unmodified	1832.945	0.94499959	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.33		11	3						6	4	6	5	5	102.96	100.47	2;3	1.1691E-42	53062	160513_QHF_FH_JSI9Kac_6	229.54	207.31			0.96558	0.94756	42.116	20	13	Median	1.2379	1.046	42.868	4	3	Median	0.74536	0.92191	52.492	6	4	Median	1.0127	1.0041	11.176	5	2	Median	0.846	0.92177	58.069	5	4	Median	2305000000	1093300000	1211700000	434590000	185010000	249570000	871520000	397480000	474050000	788090000	398590000	389490000	210770000	112230000	98545000	37730	4321	35494	231495;231496;231497;231498;231499;231500;231501;231502;231503;231504;231505;231506;231507;231508;231509;231510;231511;231512;231513;231514	311364;311365;311366;311367;311368;311369;311370;311371;311372;311373;311374;311375;311376;311377;311378;311379;311380;311381;311382;311383;311384;311385;311386;311387;311388;311389;311390;311391;311392;311393	311389			30	
MVVDAVMMLDDLLQLK	1	Oxidation (M)	1848.9399	0.93991421	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	0		By matching	By MS/MS	By MS/MS	3.6	4.15		7	2						1		1	5	4	103.07	101.94	2;3	7.1246E-12	91014	160511_QHF_FH_JSI11i_2	108.71	90.796			0.69097	0.73819	53.597	9	5	Median	NaN	NaN	NaN	0	0	Median	0.68836	0.86121	NaN	1	0	Median	0.78587	0.76738	12.496	4	2	Median	0.44077	0.48622	76.587	4	3	Median	234930000	143800000	91130000	0	0	0	14094000	9774200	4319800	125130000	69931000	55197000	95708000	64094000	31614000	37731	4321	35494	231515;231516;231517;231518;231519;231520;231521;231522;231523;231524	311394;311395;311396;311397;311398;311399;311400;311401	311398		2446;2447;2448	7	
MVVESAYEVIK	1	Unmodified	1266.653	0.65297497	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.36	5	4	4	1		2	4	4	4	6	8	6	8	63.632	57.61	2	2.14E-35	31932	160513_QHF_FH_JSI11Kac_5	190.24	167.5			0.92296	0.97181	45.899	28	4	Median	1.2466	1.0441	18.606	6	0	Median	0.81199	0.95267	14.281	8	0	Median	0.89229	0.87258	42.59	6	0	Median	0.94824	0.98945	78.209	8	4	Median	52495000000	24754000000	27741000000	9352300000	4272200000	5080100000	13172000000	6281900000	6890300000	13837000000	6734800000	7102200000	16133000000	7465300000	8668000000	37732	864	35495	231525;231526;231527;231528;231529;231530;231531;231532;231533;231534;231535;231536;231537;231538;231539;231540;231541;231542;231543;231544;231545;231546;231547;231548;231549;231550;231551;231552	311402;311403;311404;311405;311406;311407;311408;311409;311410;311411;311412;311413;311414;311415;311416;311417;311418;311419;311420;311421;311422;311423;311424;311425;311426;311427;311428;311429;311430;311431;311432;311433;311434;311435;311436;311437;311438;311439;311440;311441;311442;311443;311444;311445;311446;311447;311448;311449;311450;311451;311452;311453;311454;311455;311456;311457;311458;311459;311460;311461;311462;311463;311464;311465;311466	311449			65	
MVVESAYEVIK	1	Oxidation (M)	1282.6479	0.64788959	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.04	6.13	8	9	2		2	7	8	10	1	8	15	11	13	55.956	49.359	2	1.1422E-10	27053	160513_QHF_FH_JSI10Kac_4	132.01	102.2			0.95222	0.95967	41.285	46	23	Median	1.0031	0.858	25.434	7	3	Median	0.7983	0.95229	36.602	15	9	Median	0.97238	0.9671	33.409	11	6	Median	1.1172	1.2249	59.212	13	5	Median	3743500000	1897400000	1846100000	445450000	232830000	212620000	1292500000	704160000	588300000	1149700000	520110000	629580000	855870000	440290000	415580000	37733	864	35495	231553;231554;231555;231556;231557;231558;231559;231560;231561;231562;231563;231564;231565;231566;231567;231568;231569;231570;231571;231572;231573;231574;231575;231576;231577;231578;231579;231580;231581;231582;231583;231584;231585;231586;231587;231588;231589;231590;231591;231592;231593;231594;231595;231596;231597;231598;231599	311467;311468;311469;311470;311471;311472;311473;311474;311475;311476;311477;311478;311479;311480;311481;311482;311483;311484;311485;311486;311487;311488;311489;311490;311491;311492;311493;311494;311495;311496;311497;311498;311499;311500;311501;311502;311503;311504;311505;311506;311507;311508;311509;311510;311511;311512;311513;311514;311515;311516;311517;311518;311519;311520;311521;311522;311523;311524;311525	311480		400	59	
MVVLSLPR	0	Unmodified	913.54191	0.54190838	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	72.014	62.615	2	0.015342	32784	160513_QHF_FH_JSI12Kac_6	66.682	53.174			1.3912	1.332	11.757	6	1	Median	1.6746	1.4052	4.6878	2	1	Median	1.2144	1.4298	19.677	2	0	Median	1.3954	1.3052	NaN	1	0	Median	1.0758	1.1832	NaN	1	0	Median	180130000	76075000	104050000	36043000	14844000	21198000	66665000	28590000	38075000	62854000	24533000	38321000	14565000	8107600	6457700	37734	2517	35496	231600;231601;231602;231603;231604;231605	311526;311527;311528;311529;311530	311529			5	
MVVMHPMPR	0	Unmodified	1096.5344	0.53439693	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.88		4	6						1	3	4	2	2	31.659	29.727	2;3	8.3596E-05	24236	160511_QHF_FH_JSI9i_3	82.279	50.061			1.0765	1.0686	22.266	9	1	Median	1.221	1.0228	6.1908	2	0	Median	1.0165	1.1946	38.557	3	1	Plateau	1.1465	1.1697	6.8868	2	0	Median	1.0074	1.0534	2.0385	2	0	Median	621010000	321330000	299680000	133790000	67796000	65990000	180020000	106220000	73793000	39897000	21440000	18458000	267310000	125870000	141440000	37735	1296	35497	231606;231607;231608;231609;231610;231611;231612;231613;231614;231615;231616	311531;311532;311533;311534;311535;311536;311537;311538	311535			5	
MVVNEGSDGGQSVYHVHLHVLGGR	0	Unmodified	2546.2448	0.24483851	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	1.9			1						45	15	8	8	15	66.014	57.017	3;4;5	1.2186E-222	29760	160513_QHF_FH_JSI12Kac_6	308.19	300.38			1.2701	1.3511	59.733	46	7	Median	0.77806	0.64514	20.228	15	2	Median	1.0546	1.2512	16.317	8	1	Median	1.5494	1.5224	26.253	8	1	Median	2.2717	2.4091	31.897	15	3	Median	6504900000	3001900000	3503000000	2206600000	1183000000	1023600000	2447000000	1180600000	1266400000	704990000	264280000	440710000	1146400000	374030000	772340000	37736	1683	35498	231617;231618;231619;231620;231621;231622;231623;231624;231625;231626;231627;231628;231629;231630;231631;231632;231633;231634;231635;231636;231637;231638;231639;231640;231641;231642;231643;231644;231645;231646;231647;231648;231649;231650;231651;231652;231653;231654;231655;231656;231657;231658;231659;231660;231661;231662	311539;311540;311541;311542;311543;311544;311545;311546;311547;311548;311549;311550;311551;311552;311553;311554;311555;311556;311557;311558;311559;311560;311561;311562;311563;311564;311565;311566;311567;311568;311569;311570;311571;311572;311573;311574;311575;311576;311577;311578;311579;311580;311581;311582;311583;311584;311585;311586;311587;311588;311589;311590;311591	311571			48	
MVVNEGSDGGQSVYHVHLHVLGGR	0	Oxidation (M)	2562.2398	0.23975313	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									19	4	4	3	8	61.347	51.971	3;4	1.1224E-52	27272	160513_QHF_FH_JSI12Kac_6	184.96	177.6			1.4595	1.5458	54.453	18	4	Median	0.90436	0.7842	18.374	4	1	Median	1.0457	1.2197	16.667	4	0	Median	1.4595	1.4114	13.788	2	1	Median	2.3037	2.44	17.437	8	2	Median	549520000	243190000	306330000	170210000	92117000	78095000	121290000	64090000	57199000	36974000	18112000	18862000	221050000	68873000	152180000	37737	1683	35498	231663;231664;231665;231666;231667;231668;231669;231670;231671;231672;231673;231674;231675;231676;231677;231678;231679;231680;231681	311592;311593;311594;311595;311596;311597;311598;311599;311600;311601;311602;311603;311604;311605;311606;311607	311599		1367	15	
MVVPAALK	1	Unmodified	827.4939	0.49389555	1497	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.66	6		2					1	1	1	1	5	3	47.854	44.221	2	0.0028805	39774	160511_QHF_FH_JSI11i_1	75.311	50.312			0.67451	0.66067	27.755	6	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59716	0.58611	17.998	4	3	Median	0.91886	0.92909	5.8299	2	2	Median	1022300000	592800000	429510000	0	0	0	0	0	0	634540000	385580000	248960000	387760000	207220000	180550000	37738	1497	35499	231682;231683;231684;231685;231686;231687;231688;231689;231690;231691	311608;311609;311610;311611;311612;311613;311614;311615;311616;311617	311610			10	
MVVPGLDGAQIPR	0	Unmodified	1351.7282	0.7282056	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.93	4	9	2					3		5	6	4	3	72.539	71.033	2;3	7.9715E-06	59614	160511_QHF_FH_JSI10i_3	86.624	58.611			0.80295	0.89074	17.265	14	3	Median	1.2082	1.0161	12.705	3	0	Median	0.77549	0.95569	11.868	4	3	Median	0.83742	0.85615	9.7548	4	0	Median	0.77896	0.87355	21.905	3	0	Median	3361500000	1835400000	1526200000	435540000	207780000	227760000	1095600000	600910000	494670000	1215500000	676260000	539200000	614960000	350410000	264550000	37739	1650	35500	231692;231693;231694;231695;231696;231697;231698;231699;231700;231701;231702;231703;231704;231705;231706;231707;231708;231709	311618;311619;311620;311621;311622;311623;311624;311625;311626;311627;311628;311629;311630;311631;311632;311633;311634;311635;311636;311637;311638	311623			21	
MVVPGLDGAQIPRDPSQQELPR	0	Unmodified	2402.2376	0.23762787	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	74.42	73.888	3	1.8624E-18	64195	160511_QHF_FH_JSI12i_3	150.69	138.56			1.1428	1.1843	8.6001	9	1	Median	1.4295	1.1843	NaN	1	0	Median	1.0965	1.2963	3.999	2	0	Median	1.1595	1.1386	5.8132	3	0	Median	1.0702	1.2561	13.276	3	1	Plateau	8289200000	3750500000	4538700000	1431000000	535060000	895900000	1778800000	874230000	904530000	3106600000	1470600000	1636000000	1972900000	870680000	1102200000	37740	1650	35501	231710;231711;231712;231713;231714;231715;231716;231717;231718	311639;311640;311641;311642;311643;311644;311645;311646;311647;311648;311649;311650;311651;311652;311653;311654	311653			16	
MVVPGLDGAQIPRDPSQQELPR	0	Oxidation (M)	2418.2325	0.23254249	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.615	2	8	3							2	3	3	5	65.647	64.962	3	2.8831E-09	55944	160511_QHF_FH_JSI12i_2	101.64	88.709			1.0994	1.1014	31.211	13	5	Median	2.0092	1.7225	15.484	2	1	Median	1.2801	1.5435	31.848	3	1	Median	1.0726	1.0615	37.237	3	1	Plateau	1.0994	1.1014	6.7429	5	2	Median	479590000	237300000	242290000	53889000	20084000	33806000	97118000	51414000	45705000	105580000	57852000	47725000	223000000	107950000	115050000	37741	1650	35501	231719;231720;231721;231722;231723;231724;231725;231726;231727;231728;231729;231730;231731	311655;311656;311657;311658;311659;311660;311661;311662;311663;311664;311665;311666;311667;311668;311669;311670;311671;311672;311673;311674;311675	311659		1321	21	
MVVPVAALFTPLK	1	Unmodified	1384.8152	0.81522969	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	3	3	101.91	101.81	2;3	1.15E-16	89567	160511_QHF_FH_JSI11i_2	133.81	95.504			1.0202	1.0355	39.637	10	0	Median	1.151	0.9507	15.293	2	0	Median	0.87614	1.0732	39.985	3	0	Plateau	1.2374	1.2147	32.29	2	0	Median	0.90578	1.0123	42.963	3	0	Plateau	2457000000	1258000000	1199000000	522450000	221710000	300750000	836360000	468230000	368130000	379280000	192860000	186420000	718880000	375160000	343710000	37742	2674	35502	231732;231733;231734;231735;231736;231737;231738;231739;231740;231741;231742	311676;311677;311678;311679;311680;311681;311682	311681			6	
MVVSDFHVFVR	0	Unmodified	1334.6805	0.68052712	4301	Q99685	MGLL	Monoglyceride lipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	2	2	70.879	68.069	3	8.7521E-06	35538	160513_QHF_FH_JSI9Kac_6	98.737	88.127			0.83707	0.94463	26.6	6	2	Median	1.4011	1.2006	NaN	1	0	Median	0.81797	0.94463	6.5581	2	0	Median	0.71399	0.67113	23.46	2	2	Median	1.0788	1.0837	NaN	1	0	Median	312790000	171450000	141340000	20161000	6526400	13635000	55947000	29529000	26418000	149090000	86301000	62790000	87591000	49092000	38499000	37743	4301	35503	231743;231744;231745;231746;231747;231748;231749	311683;311684;311685;311686;311687;311688	311685			6	
MVVSFNR	0	Unmodified	851.43236	0.43235793	1600;2445	P46940;Q13576	IQGAP1;IQGAP2	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	36.81	36.023	2	0.007086	30568	160511_QHF_FH_JSI12i_3	88.734	62.625			0.96874	1.0909	10.079	5	0	Median	1.29	1.0909	NaN	1	0	Median	0.7393	0.91021	NaN	1	0	Median	0.89623	0.92033	NaN	1	0	Median	1.029	1.1042	0.41603	2	0	Median	2445300000	1288700000	1156600000	441230000	211010000	230220000	446100000	237820000	208280000	493580000	290290000	203290000	1064300000	549560000	514790000	37744	1600;2445	35504	231750;231751;231752;231753;231754	311689;311690;311691;311692	311691			4	
MVVSIGWNPYYK	1	Unmodified	1455.7221	0.72205759	3938	Q969G6	RFK	Riboflavin kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	81.029	72.56	2	6.5744E-24	38143	160513_QHF_FH_JSI12Kac_6	163.94	145.19			0.94377	1.023	22.096	5	2	Median	1.0876	0.93678	NaN	1	0	Median	0.87911	1.0453	NaN	1	0	Median	0.90733	0.87017	40.636	2	2	Median	0.94377	1.023	NaN	1	0	Median	428600000	232330000	196270000	73902000	46055000	27846000	160590000	76485000	84105000	132250000	71228000	61024000	61857000	38565000	23292000	37745	3938	35505	231755;231756;231757;231758;231759	311693;311694;311695;311696;311697;311698;311699	311698			7	
MVVSIGWNPYYK	1	Oxidation (M)	1471.717	0.71697221	3938	Q969G6	RFK	Riboflavin kinase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	76.392	67.233	2	3.1131E-08	35268	160513_QHF_FH_JSI12Kac_6	113.22	87.281			0.94127	0.7778	14.662	3	0	Plateau	1.0296	0.87431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84038	0.88575	20.707	2	0	Median	54264000	30455000	23810000	18423000	11243000	7180400	0	0	0	0	0	0	35841000	19212000	16629000	37746	3938	35505	231760;231761;231762;231763	311700;311701;311702;311703;311704	311702		2361	4	
MVVTFLMSALESMCK	1	Unmodified	1745.8224	0.82244161	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.76	102.76	3	0.00035399	91879	160511_QHF_FH_JSI11i_3	74.769	64.134			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8150500	8150500	0	0	0	0	0	0	0	8150500	8150500	0	0	0	0	37747	2087	35506	231764	311705	311705			1	
MVVVGNGAVGK	1	Unmodified	1029.5641	0.56410038	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								2	1			31.939	30.949	2	0.0075757	27146	160511_QHF_FH_JSI10i_2	60.59	37.161			1.0424	1.0765	63.933	2	2	Median	1.9359	1.6918	NaN	1	1	Median	0.56127	0.68497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40023000	18420000	21603000	18852000	5798100	13054000	21171000	12622000	8548400	0	0	0	0	0	0	37748	5394	35507	231765;231766;231767	311706;311707;311708	311708			3	
MVYDMEK	1	Unmodified	914.38778	0.3877755	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			26.598	26.295	2	0.026669	23155	160511_QHF_FH_JSI10i_1	56.547	44.116			0.56909	0.67529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56909	0.67529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123830000	74827000	49002000	0	0	0	123830000	74827000	49002000	0	0	0	0	0	0	37749	3840	35508	231768	311709	311709			1	
MVYIYHSLK	1	Unmodified	1152.6002	0.60015154	3397	Q8IUF8	MINA	Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	1	2	1	50.799	41.442	2;3	1.3191E-05	22077	160513_QHF_FH_JSI9Kac_6	102.07	91.162			0.82733	0.81053	57.945	7	3	Median	0.74491	0.65099	76.877	3	2	Median	0.36713	0.43634	NaN	1	1	Median	1.0436	1.0144	31.724	2	0	Median	1.273	1.3706	NaN	1	0	Median	638270000	369390000	268880000	287920000	168170000	119740000	161610000	96745000	64867000	125440000	70750000	54687000	63309000	33731000	29578000	37750	3397	35509	231769;231770;231771;231772;231773;231774;231775	311710;311711;311712;311713;311714;311715	311713			6	
MVYSTCSLNPIEDEAVIASLLEK	1	Unmodified	2581.2655	0.26554168	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	102.38	102.27	3	4.2912E-20	88195	160511_QHF_FH_JSI12i_2	151.42	147.61			0.9963	1.1614	30.863	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76281	0.93373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3012	1.4447	NaN	1	0	Median	284040000	127260000	156780000	0	0	0	76687000	39911000	36776000	0	0	0	207350000	87347000	120010000	37751	2282	35510	231776;231777	311716;311717	311716			2	
MVYYLDPSSQK	1	Unmodified	1329.6275	0.6274885	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	8						4			2	4	3	3	53.874	49.832	2	2.2379E-09	28275	160513_QHF_FH_JSI11Kac_4	125.82	117.89			2.328	1.8031	43.724	12	10	Linear	1.5556	1.2651	27.367	2	2	Median	1.98	2.3359	60.861	4	4	Median	1.8224	1.796	40.827	3	2	Plateau	2.2976	2.4385	36.483	3	2	Plateau	2343400000	715190000	1628200000	412080000	151550000	260530000	712910000	178750000	534160000	614760000	192990000	421770000	603630000	191900000	411730000	37752	4518	35511	231778;231779;231780;231781;231782;231783;231784;231785;231786;231787;231788;231789	311718;311719;311720;311721;311722;311723;311724;311725;311726;311727;311728;311729;311730	311726			13	
MVYYLDPSSQK	1	Oxidation (M)	1345.6224	0.62240312	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	51.56	42.462	2	0.028791	22962	160513_QHF_FH_JSI12Kac_3	55.567	32.827			0.85792	0.90435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85792	0.90435	NaN	1	1	Median	1476100	807860	668260	0	0	0	0	0	0	0	0	0	1476100	807860	668260	37753	4518	35511	231790	311731	311731			1	
MWDLSSNQAIQIAQHDAPVK	1	Unmodified	2251.1056	0.10555106	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		1	3	77.739	77.055	3	5.4601E-15	66460	160511_QHF_FH_JSI12i_2	145.52	130.75			0.79171	0.79556	20.703	5	5	Median	0.79171	0.67481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80398	0.72912	NaN	1	1	Median	0.78238	0.81761	20.898	3	3	Median	683020000	391100000	291920000	147960000	86724000	61237000	0	0	0	48646000	24394000	24252000	486410000	279980000	206430000	37754	2092	35512	231791;231792;231793;231794;231795	311732;311733;311734;311735;311736;311737	311734			6	
MWDPHNDPNAQGDAFK	1	Unmodified	1841.7791	0.77913155	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.287	1	10								2	3	4	2	42.307	41.475	2;3	1.0331E-10	35714	160511_QHF_FH_JSI11i_2	143.14	139.11			0.95293	0.93118	21.888	8	4	Median	1.0082	0.87132	NaN	1	0	Median	0.73137	0.91943	NaN	1	0	Median	1.0128	1.0142	19.074	4	3	Median	0.71061	0.7699	23.771	2	1	Median	1664900000	735340000	929580000	184170000	81374000	102790000	318000000	156450000	161550000	766740000	289730000	477010000	396010000	207780000	188230000	37755	910	35513	231796;231797;231798;231799;231800;231801;231802;231803;231804;231805;231806	311738;311739;311740;311741;311742;311743;311744;311745;311746;311747;311748;311749;311750;311751;311752;311753;311754;311755;311756;311757;311758;311759;311760	311751			23	
MWEVLESTTQTK	1	Unmodified	1451.6966	0.6966307	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.857	59.534	2	0.0088992	50973	160511_QHF_FH_JSI12i_2	58.699	44.008			0.34787	0.38877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34787	0.38877	NaN	1	1	Median	166880000	138440000	28434000	0	0	0	0	0	0	0	0	0	166880000	138440000	28434000	37756	2162	35514	231807	311761	311761			1	
MWEVQTGYCVK	1	Unmodified	1399.6264	0.62644264	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	55.643	54.704	2	2.2891E-06	46799	160511_QHF_FH_JSI12i_2	118.18	105.22			0.37356	0.39139	59.314	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59468	0.59534	NaN	1	1	Median	0.23466	0.25732	NaN	1	1	Median	289570000	228900000	60669000	0	0	0	0	0	0	106710000	83549000	23158000	182860000	145350000	37511000	37757	1553	35515	231808;231809	311762;311763;311764	311762			3	
MWFQWSEQR	0	Unmodified	1296.571	0.57097667	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	73.936	68.265	2	1.5572E-16	37475	160513_QHF_FH_JSI10Kac_6	167.33	147.57			0.67745	0.73885	36.269	6	0	Median	1.5877	1.3747	NaN	1	0	Median	0.6508	0.76061	NaN	1	0	Median	0.90199	0.86078	43.851	2	0	Median	0.60523	0.6241	19.768	2	0	Median	517620000	281000000	236630000	47580000	17929000	29651000	196010000	110390000	85622000	148550000	74570000	73977000	125490000	78111000	47378000	37758	271	35516	231810;231811;231812;231813;231814;231815	311765;311766;311767;311768;311769;311770;311771;311772;311773;311774;311775	311775			11	
MWITNGGK	1	Unmodified	905.44292	0.44292261	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	32.022	31.176	2	0.0027585	27376	160511_QHF_FH_JSI10i_2	77.674	58.943			1.0443	1.023	47.803	4	2	Median	1.1939	1.0329	NaN	1	1	Median	0.75439	0.91763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5194	1.608	65.326	2	1	Median	741870000	391870000	350000000	187360000	94789000	92567000	248970000	135750000	113220000	0	0	0	305540000	161330000	144210000	37759	997	35517	231816;231817;231818;231819	311776;311777;311778;311779;311780;311781	311779			6	
MWLGDDVK	1	Unmodified	962.45315	0.45315295	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.779	48.258	2	0.0094576	41599	160511_QHF_FH_JSI11i_2	64.567	29.675			1.9786	1.9479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9786	1.9479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42221000	18363000	23858000	0	0	0	0	0	0	42221000	18363000	23858000	0	0	0	37760	5485	35518	231820	311782	311782			1	
MWPLAFGSGMGLGMAYSNCQHDFQAPYLLHGK	1	Unmodified	3583.6298	0.62977724	2972	Q5TGZ0	MINOS1	MICOS complex subunit MIC10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.842	86.122	4	9.6773E-26	49192	160513_QHF_FH_JSI10Kac_6	153.12	147.75			0.87596	1.0532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87596	1.0532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149910000	60103000	89803000	0	0	0	149910000	60103000	89803000	0	0	0	0	0	0	37761	2972	35519	231821	311783	311783			1	
MWPVFWTVVR	0	Unmodified	1319.6849	0.68488422	4061	Q96EX1	SMIM12	Small integral membrane protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.623	85.252	2	7.8395E-09	47729	160513_QHF_FH_JSI9Kac_6	144.12	115.91			1.0516	1.09	8.676	4	0	Median	1.3501	1.1512	NaN	1	0	Median	1.0091	1.1841	NaN	1	0	Median	1.096	1.0321	NaN	1	0	Median	0.93254	0.98709	NaN	1	0	Median	3038400000	1530400000	1508000000	642760000	304060000	338690000	985400000	528290000	457110000	998260000	501020000	497240000	411940000	197000000	214940000	37762	4061	35520	231822;231823;231824;231825	311784;311785;311786;311787;311788;311789;311790;311791	311787			8	
MWPVFWTVVR	0	Oxidation (M)	1335.6798	0.67979884	4061	Q96EX1	SMIM12	Small integral membrane protein 12	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			89.127	83.407	2	0.030769	47258	160513_QHF_FH_JSI10Kac_6	56.258	36.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37763	4061	35520	231826	311792	311792			1	
MWRLLAR	0	Oxidation (M)	960.53274	0.53274067	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			64.539	56.371	3	0.039028	31042	160513_QHF_FH_JSI10Kac_6	41.502	20.982			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37764	5088	35521	231827	311793	311793			1	
MWSIENIAFGSGGGLLQK	1	Unmodified	1906.9611	0.96111866	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3	2	1	1	3	97.599	94.161	2;3	5.0664E-149	88077	160511_QHF_FH_JSI12i_3	337.53	278.1			1.1219	0.95792	35.06	7	5	Median	1.3639	1.1624	27.366	2	1	Median	0.77562	0.91754	NaN	1	1	Median	1.2582	1.179	NaN	1	1	Median	0.8905	0.91673	51.238	3	2	Median	986980000	425700000	561290000	136890000	50498000	86391000	62725000	42206000	20520000	215700000	79090000	136610000	571670000	253910000	317760000	37765	1566	35522	231828;231829;231830;231831;231832;231833;231834	311794;311795;311796;311797;311798;311799;311800	311797			5	
MWTPELAILR	0	Unmodified	1228.6638	0.66381443	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.07	90.554	2	0.055624	79592	160511_QHF_FH_JSI11i_2	49.418	26.678			0.83945	0.84542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83945	0.84542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24752000	13982000	10770000	0	0	0	0	0	0	24752000	13982000	10770000	0	0	0	37766	3103	35523	231835	311801	311801			1	
MWVFEETVNGR	0	Unmodified	1366.634	0.63397086	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.62	69.323	2	0.0081439	59761	160511_QHF_FH_JSI12i_2	50.805	38.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37767	3513	35524	231836	311802	311802			1	
MWVFGYGSLIWK	1	Unmodified	1485.7479	0.74787841	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		95.319	87.275	2	5.7692E-12	48965	160513_QHF_FH_JSI11Kac_6	120.68	84.723			0.87294	0.95883	37.31	3	2	Median	0.59673	0.51278	NaN	1	1	Median	0.87294	0.99691	NaN	1	1	Median	0.99959	0.95883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325670000	175340000	150330000	118170000	78748000	39419000	83502000	42669000	40833000	124000000	53925000	70076000	0	0	0	37768	3770	35525	231837;231838;231839	311803;311804;311805	311803			3	
MWVQLLIPR	0	Unmodified	1154.6634	0.66342049	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	91.816	88.762	2	8.3007E-24	43787	160513_QHF_FH_JSI11Kac_6	182.13	163.03			0.98023	0.9892	11.314	12	0	Median	1.2774	1.0779	14.628	3	0	Plateau	0.84629	1.0059	4.6493	3	0	Median	1.0523	1.0412	5.701	3	0	Median	1.0246	1.0635	17.208	3	0	Plateau	6420200000	3067200000	3353000000	1227700000	559030000	668700000	2340000000	1202900000	1137100000	1305600000	532200000	773380000	1546900000	773030000	773840000	37769	1950	35526	231840;231841;231842;231843;231844;231845;231846;231847;231848;231849;231850;231851	311806;311807;311808;311809;311810;311811;311812;311813;311814;311815;311816;311817;311818;311819	311811			14	
MWVQLLIPR	0	Oxidation (M)	1170.6583	0.65833512	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	83.027	74.342	2	3.5838E-11	39263	160513_QHF_FH_JSI12Kac_6	154.01	142.24			0.97379	0.984	17.535	5	2	Median	1.3923	1.1908	26.976	2	1	Median	0.81094	0.97688	NaN	1	1	Median	0.97357	0.9359	NaN	1	0	Median	0.97379	1.0275	NaN	1	0	Median	819830000	403490000	416340000	224440000	104580000	119860000	293620000	141520000	152100000	117220000	60689000	56530000	184540000	96699000	87843000	37770	1950	35526	231852;231853;231854;231855;231856	311820;311821;311822;311823;311824;311825	311824		1621	6	
MYAALGDPK	1	Unmodified	964.4688	0.46880301	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.32	6		1				2			3	2	3	1	34.191	31.394	2	0.00024975	28202	160511_QHF_FH_JSI11i_1	98.133	76.029			0.96114	1.006	70.955	9	6	Median	1.337	1.0797	100.01	3	2	Plateau	0.5913	0.692	39.64	2	1	Median	1.1045	1.0739	71.824	3	2	Median	0.96114	1.006	NaN	1	1	Median	1702800000	818790000	884020000	463040000	161050000	301990000	384600000	222630000	161970000	621000000	324430000	296570000	234170000	110670000	123500000	37771	2094	35527	231857;231858;231859;231860;231861;231862;231863;231864;231865	311826;311827;311828;311829;311830;311831;311832;311833	311827			7	
MYAPAWVAPEALQK	1	Unmodified	1573.7963	0.79628516	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								2	4	4	2	78.528	77.952	2;3	3.5154E-06	69404	160511_QHF_FH_JSI10i_2	123.8	108.23			0.73853	0.80257	33.89	11	5	Median	0.91395	0.78445	3.2287	2	1	Median	0.61743	0.72891	30.375	4	2	Median	0.79105	0.7803	46.724	4	2	Median	0.92736	1.0119	NaN	1	0	Median	442240000	239700000	202540000	81557000	37998000	43560000	142210000	88612000	53602000	179260000	91512000	87752000	39206000	21578000	17629000	37772	2403	35528	231866;231867;231868;231869;231870;231871;231872;231873;231874;231875;231876;231877	311834;311835;311836;311837;311838;311839;311840;311841;311842;311843;311844;311845;311846;311847;311848;311849	311849			16	
MYDLNSNNPNPIISYDGVNK	1	Unmodified	2267.0528	0.052846792	4467	Q9BVC4	MLST8	Target of rapamycin complex subunit LST8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	72.309	71.916	2	6.6954E-11	65166	160511_QHF_FH_JSI10i_1	128.96	110.13			1.3205	1.4673	1.3887	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2457	1.4818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3999	1.453	NaN	1	1	Median	56652000	32516000	24136000	0	0	0	37335000	22014000	15321000	0	0	0	19317000	10502000	8815300	37773	4467	35529	231878;231879	311850;311851	311851			2	
MYEEFLSK	1	Unmodified	1045.479	0.47903335	977;1371	P10644;P31321	PRKAR1A;PRKAR1B	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								2	4	3	2	47.931	47.164	2	0.0056536	42510	160511_QHF_FH_JSI11i_1	73.208	60.418			0.71784	0.68639	120.28	11	11	Median	1.1903	0.98551	173.53	2	2	Median	1.0014	1.1795	131.35	4	4	Median	0.71784	0.68639	115.02	3	3	Median	1.4979	1.6013	181.81	2	2	Median	1707700000	820550000	887160000	203280000	108770000	94515000	547210000	271600000	275610000	599790000	257960000	341830000	357430000	182220000	175200000	37774	977;1371	35530	231880;231881;231882;231883;231884;231885;231886;231887;231888;231889;231890	311852;311853;311854;311855;311856;311857;311858;311859;311860;311861;311862	311852			11	
MYEEHLK	1	Unmodified	948.4375	0.43750288	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.14		14	4					4	4	5	7	7	7	15.532	12.325	2;3	0.0011164	10068	160511_QHF_FH_JSI11i_2	124.37	70.664			0.93741	0.96048	53.146	24	10	Median	1.2723	1.0524	27.051	5	0	Median	0.99391	1.1747	56.018	6	4	Median	0.80536	0.8121	38.041	6	2	Median	0.7822	0.8638	67.752	7	4	Median	8336900000	4847600000	3489300000	1203300000	582760000	620560000	1830000000	1040900000	789100000	2646500000	1455600000	1190900000	2657100000	1768300000	888780000	37775	2127	35531	231891;231892;231893;231894;231895;231896;231897;231898;231899;231900;231901;231902;231903;231904;231905;231906;231907;231908;231909;231910;231911;231912;231913;231914;231915;231916	311863;311864;311865;311866;311867;311868;311869;311870;311871;311872;311873;311874;311875;311876;311877;311878;311879;311880;311881;311882;311883;311884;311885;311886;311887;311888;311889;311890;311891;311892;311893;311894;311895;311896;311897;311898;311899	311881			37	
MYEEHLK	1	Oxidation (M)	964.43242	0.43241751	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	13.644	13.088	3	0.0025898	10347	160511_QHF_FH_JSI12i_2	79.597	42.576			0.44698	0.44915	44.484	3	0	Median	0.32206	0.28774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.44698	0.44915	NaN	1	0	Median	0.63368	0.70047	NaN	1	0	Median	305460000	199310000	106150000	46577000	41521000	5056500	0	0	0	132350000	88524000	43824000	126540000	69264000	57271000	37776	2127	35531	231917;231918;231919	311900;311901;311902	311900		1784	3	
MYEEHLKR	1	Acetyl (K)	1146.5492	0.5491786	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		26.667	18.19	3	0.019521	10750	160513_QHF_FH_JSI11Kac_6	78.516	68.735			0.24755	0.25953	31.392	2	1	Median	NaN	NaN	NaN	0	0	Median	0.17989	0.20787	NaN	1	1	Median	0.34065	0.32404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32452000	23804000	8648600	0	0	0	4605900	4120200	485680	27846000	19684000	8162900	0	0	0	37777	2127	35532	231920;231921	311903;311904	311903	2225		2	
MYETVDEGLK	1	Unmodified	1183.5431	0.54309017	3272	Q7Z4H8	KDELC2	KDEL motif-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.334	36.08	2	0.001375	32426	160511_QHF_FH_JSI11i_1	70.816	56.147			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37778	3272	35533	231922	311905	311905			1	
MYEVVYQIGTETR	0	Unmodified	1587.7603	0.76029359	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	2	3	63.603	62.757	2	8.3089E-07	55466	160511_QHF_FH_JSI10i_2	89.403	66.762			0.69448	0.64306	59.844	8	8	Median	1.2851	1.0997	78.517	2	2	Median	0.40622	0.48485	20.975	2	2	Median	0.93533	0.93076	49.655	2	2	Median	0.75396	0.84367	91.901	2	2	Median	574170000	299530000	274640000	92607000	35418000	57188000	85977000	49700000	36278000	203690000	105590000	98102000	191890000	108820000	83071000	37779	5300	35534	231923;231924;231925;231926;231927;231928;231929;231930;231931;231932	311906;311907;311908;311909;311910;311911;311912;311913;311914;311915	311915			10	
MYFDKYVLK	2	Acetyl (K)	1247.626	0.62603194	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.493	70.179	2	0.013182	38483	160513_QHF_FH_JSI11Kac_6	68.371	53.11			4.7614	4.516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.7614	4.516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64672000	15123000	49549000	0	0	0	0	0	0	64672000	15123000	49549000	0	0	0	37780	5035	35535	231933	311916	311916	3299;3300		1	
MYFDKYVLKPATEGK	3	Acetyl (K)	1830.9226	0.92260789	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	2	By matching		By MS/MS		16	0									2	1		1		76.443	67.479	3	0.02058	36796	160513_QHF_FH_JSI11Kac_6	50.053	39.714			0.92234	0.8498	20.275	2	0	Median	1.1189	0.9808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76029	0.7363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75215000	42672000	32542000	29435000	16397000	13038000	0	0	0	45780000	26276000	19504000	0	0	0	37781	5035	35536	231934;231935	311917	311917	3299;3300		0	
MYFPDVEFDIK	1	Unmodified	1402.6479	0.64788959	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	1	2	95.435	95.131	2	4.3592E-05	81972	160511_QHF_FH_JSI12i_2	103.7	88.728			0.96307	1.0849	8.6026	6	5	Median	1.2606	1.083	NaN	1	1	Median	0.8614	1.0375	6.5752	2	1	Median	1.0931	1.0877	NaN	1	1	Median	0.90196	1.0169	16.799	2	2	Median	157360000	79241000	78121000	20100000	9069000	11031000	35456000	18820000	16636000	32580000	15472000	17109000	69226000	35880000	33346000	37782	2286	35537	231936;231937;231938;231939;231940;231941;231942	311918;311919;311920;311921;311922;311923;311924	311919			7	
MYGCDVGPDGR	0	Unmodified	1225.4856	0.48559206	1352	P30453;P30457;P18462	HLA-A	HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.237	22.698	2	3.6132E-07	19739	160511_QHF_FH_JSI11i_1	118.71	28.826			1.0593	1.0375	26.727	4	0	Median	1.3725	1.1117	NaN	1	0	Median	0.81752	0.96824	NaN	1	0	Median	0.77936	0.75793	NaN	1	0	Median	1.3997	1.4372	NaN	1	0	Median	330450000	155240000	175210000	42408000	15423000	26985000	61521000	29751000	31769000	125590000	71058000	54533000	100930000	39007000	61922000	37783	1352	35538	231943;231944;231945;231946	311925;311926;311927	311925			3	
MYGISLCQAILDETK	1	Unmodified	1740.8426	0.84264301	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.287	1	10								1	5	3	2	92.003	91.534	2;3	1.2627E-14	80404	160511_QHF_FH_JSI11i_2	187.44	169.63			0.95005	1.0197	23.217	10	4	Median	0.94455	0.85392	NaN	1	0	Median	0.72031	0.893	28.301	5	4	Median	1.0119	1.0453	10.848	2	0	Median	1.0904	1.2184	17.857	2	0	Median	558780000	297160000	261630000	47433000	25734000	21699000	197180000	117720000	79469000	193660000	99171000	94489000	120500000	54535000	65969000	37784	805	35539	231947;231948;231949;231950;231951;231952;231953;231954;231955;231956;231957	311928;311929;311930;311931;311932;311933;311934;311935;311936;311937;311938;311939;311940;311941;311942;311943	311935			16	
MYGYVDTLLTMLAMLLK	1	Oxidation (M)	1991.0182	0.018164531	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			105.8	100.08	3	1.0324E-07	59309	160513_QHF_FH_JSI10Kac_6	110.77	92.858			1.0218	1.2095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0218	1.2095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78524000	37581000	40943000	0	0	0	78524000	37581000	40943000	0	0	0	0	0	0	37785	5675	35540	231958	311944	311944		2730	1	
MYGYVDTLLTMLAMLLK	1	Unmodified	1975.0232	0.023249909	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.11	100.39	3	2.1525E-44	59510	160513_QHF_FH_JSI10Kac_6	180.97	157.83			0.67042	0.80645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67042	0.80645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148320000	89307000	59017000	0	0	0	148320000	89307000	59017000	0	0	0	0	0	0	37786	5675	35540	231959	311945;311946	311945			2	
MYIALTGLQHAGR	0	Unmodified	1429.75	0.75000367	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	10.8	6.37			2						3	1	2	1	1	64.823	59.225	3	1.0347E-08	32495	160513_QHF_FH_JSI10Kac_6	110.98	105.49			1.0919	1.2977	31.868	5	1	Median	1.5319	1.3186	NaN	1	1	Median	0.83358	0.9751	40.422	2	0	Median	1.5271	1.4894	NaN	1	0	Median	0.80968	0.81532	NaN	1	0	Median	461700000	244210000	217480000	39062000	16653000	22409000	276210000	167670000	108540000	94633000	30679000	63954000	51788000	29208000	22580000	37787	4777	35541	231960;231961;231962;231963;231964	311947;311948;311949;311950	311950			3	
MYKEEGLK	2	Acetyl (K)	1038.5056	0.50558245	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							3				1	2		35.636	26.236	2	0.0008279	16192	160513_QHF_FH_JSI11Kac_4	93.374	66.772			1.7642	1.7538	123.24	3	3	Median	NaN	NaN	NaN	0	0	Median	0.73655	0.88096	NaN	1	1	Median	4.1647	4.1142	120.59	2	2	Median	NaN	NaN	NaN	0	0	Median	105770000	32229000	73542000	0	0	0	18517000	10163000	8354400	87254000	22066000	65188000	0	0	0	37788	2146	35542	231965;231966;231967	311951;311952;311953	311953	2248		3	
MYKHSNNK	2	Acetyl (K);Oxidation (M)	1078.4866	0.48657834	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		4.6648	-4.6964	3	0.0175	1295	160513_QHF_FH_JSI11Kac_6	44.753	22.667			0.26826	0.26255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26826	0.26255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5111400	4097000	1014400	0	0	0	0	0	0	5111400	4097000	1014400	0	0	0	37789	1177	35543	231968	311954	311954	1032	802	1	
MYKHSNNK	2	Acetyl (K)	1062.4917	0.49166372	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	5.5601	-1.8202	2;3	0.00063472	1805	160513_QHF_FH_JSI10Kac_6	90.601	75.45			0.2931	0.32892	94.24	5	0	Median	NaN	NaN	NaN	0	0	Median	1.3263	1.5569	3.9463	2	0	Median	0.23185	0.22499	NaN	1	0	Median	0.28888	0.31994	3.9143	2	0	Median	50027000	28442000	21584000	0	0	0	25372000	10339000	15033000	14512000	10826000	3686100	10143000	7277200	2865700	37790	1177	35543	231969;231970;231971;231972;231973	311955;311956;311957;311958;311959	311959	1032		5	
MYLFYGNK	1	Unmodified	1034.4895	0.48953845	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.67	6.86		4						1	4	2	3	2	2	62.66	56.413	2	0.00024148	31084	160513_QHF_FH_JSI10Kac_6	117.7	25.379			1.0682	1.1224	14.422	8	2	Median	1.2043	1.0293	11.775	2	0	Median	1.0772	1.3059	20.936	2	1	Median	1.1726	1.1461	14.313	2	1	Median	1.0106	1.0923	7.7041	2	0	Median	1023400000	457430000	565990000	125040000	50536000	74504000	273520000	132670000	140850000	392180000	166470000	225710000	232670000	107750000	124920000	37791	726	35544	231974;231975;231976;231977;231978;231979;231980;231981;231982	311960;311961;311962;311963;311964;311965;311966;311967;311968;311969;311970;311971;311972	311972			13	
MYLFYGNK	1	Oxidation (M)	1050.4845	0.48445308	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	1	0		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	54.135	44.753	2	0.022086	24296	160513_QHF_FH_JSI11Kac_6	50.966	45.218			0.92863	1.0577	32.172	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88738	1.0577	NaN	1	0	Median	1.8026	1.8077	NaN	1	0	Median	0.92863	1.0159	NaN	1	0	Median	21835000	11223000	10612000	0	0	0	6432900	3047600	3385200	7150100	3222300	3927800	8252400	4953100	3299200	37792	726	35544	231983;231984;231985	311973;311974	311973			2	
MYLLPDK	1	Unmodified	878.45718	0.45717569	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	51.861	51.141	2	0.019546	46255	160511_QHF_FH_JSI11i_1	58.167	37.885			0.91913	0.95874	22.972	4	1	Median	NaN	NaN	NaN	0	0	Median	0.59285	0.68226	NaN	1	0	Median	0.88118	0.84453	NaN	1	0	Median	1.0165	1.0967	1.0822	2	1	Median	157760000	88682000	69080000	0	0	0	35695000	23870000	11826000	37620000	20032000	17589000	84446000	44780000	39666000	37793	6	35545	231986;231987;231988;231989	311975;311976;311977;311978	311976			4	
MYLMLDNK	1	Unmodified	1026.4878	0.48782389	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.085	56.16	2	0.0033407	48468	160511_QHF_FH_JSI11i_2	79.116	51.591			1.1632	1.2294	35.034	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5657	1.5749	NaN	1	1	Median	0.86424	0.9596	NaN	1	1	Median	153960000	71218000	82739000	0	0	0	0	0	0	80037000	36689000	43348000	73920000	34529000	39391000	37794	1528	35546	231990;231991	311979;311980	311980			2	
MYLQAAIVR	0	Unmodified	1063.5848	0.58483582	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		55.221	54.455	2	0.004198	47033	160511_QHF_FH_JSI11i_2	67.981	49.945			0.35408	0.32871	23.691	2	2	Median	0.32831	0.27801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38187	0.38866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	196270000	143040000	53228000	61025000	44283000	16742000	0	0	0	135240000	98756000	36486000	0	0	0	37795	2454	35547	231992;231993	311981;311982	311982			2	
MYNGIGLPTPR	0	Acetyl (Protein N-term)	1259.6332	0.63324258	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	80.15	79.457	2	0.00022668	70626	160511_QHF_FH_JSI9i_1	80.231	69.521			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37796	5474	35548	231994;231995	311983;311984	311984			2	
MYNLVSR	0	Unmodified	881.44292	0.44292261	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			31.411	30.472	2	0.012815	26752	160511_QHF_FH_JSI10i_2	68.787	45.858			0.60402	0.76099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60402	0.76099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96058000	56651000	39407000	0	0	0	96058000	56651000	39407000	0	0	0	0	0	0	37797	2453	35549	231996	311985	311985			1	
MYPIDFEK	1	Unmodified	1041.4841	0.48411873	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.53	4	4					2	4		3	4	3	4	64.734	59.713	2	0.0014529	54321	160511_QHF_FH_JSI12i_1	89.296	71.448			0.99548	1.027	9.8289	14	0	Median	1.2306	1.0301	11.093	3	0	Median	0.8383	1.0164	8.774	4	0	Median	0.94977	0.9488	13.671	3	0	Plateau	0.96324	1.0805	9.9519	4	0	Median	5471600000	2832200000	2639400000	869250000	365800000	503450000	1416800000	836420000	580370000	1855500000	914760000	940720000	1330000000	715180000	614860000	37798	1208	35550	231997;231998;231999;232000;232001;232002;232003;232004;232005;232006;232007;232008;232009;232010	311986;311987;311988;311989;311990;311991;311992;311993;311994;311995;311996;311997;311998;311999;312000;312001;312002;312003;312004;312005;312006;312007;312008;312009;312010;312011;312012;312013;312014;312015;312016;312017;312018	311995			33	
MYQPLLAVGTSNGSVLVYHLTSGLLHK	1	Oxidation (M)	2913.5422	0.54224931	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	94.634	85.375	4	5.4986E-59	46371	160513_QHF_FH_JSI12Kac_6	184.29	162.45			0.99957	0.93891	11.267	3	0	Median	1.3421	1.1406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99957	0.93891	NaN	1	0	Median	0.88741	0.93778	NaN	1	0	Median	316380000	151270000	165110000	94613000	56885000	37728000	0	0	0	141840000	54987000	86857000	79928000	39400000	40528000	37799	4564	35551	232011;232012;232013	312019;312020;312021;312022;312023	312022		2495	5	
MYQPLLAVGTSNGSVLVYHLTSGLLHK	1	Unmodified	2897.5473	0.54733469	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	95.465	87.606	3;4	2.1668E-99	49021	160513_QHF_FH_JSI11Kac_6	223.85	203.77			1.067	1.0739	13.575	5	1	Median	1.264	1.0739	NaN	1	0	Median	0.74893	0.88855	6.9207	2	1	Median	1.2177	1.1646	NaN	1	0	Median	1.067	1.1309	NaN	1	0	Median	2555100000	1324300000	1230800000	475710000	211360000	264350000	1018900000	632870000	386030000	660310000	289210000	371090000	400170000	190840000	209330000	37800	4564	35551	232014;232015;232016;232017;232018	312024;312025;312026;312027;312028;312029;312030;312031;312032	312024			9	
MYQTQVSDAGLYR	0	Unmodified	1530.7137	0.71367774	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	44.537	43.667	2	6.9509E-07	39780	160511_QHF_FH_JSI12i_1	131.82	107.79			0.88539	0.98634	26.343	6	2	Median	0.93435	0.78453	51.463	2	1	Median	0.82849	0.98984	NaN	1	0	Median	0.94621	0.98285	NaN	1	0	Median	0.85273	0.90993	16.789	2	1	Median	213570000	117530000	96044000	54561000	27271000	27290000	53994000	32792000	21201000	36187000	17352000	18834000	68829000	40111000	28718000	37801	5207	35552	232019;232020;232021;232022;232023;232024;232025	312033;312034;312035;312036;312037;312038;312039;312040;312041;312042	312035			10	
MYSDLRK	1	Unmodified	911.45349	0.4534873	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							2	4	3	4	11.241	10.98	2;3	0.0044134	8206	160511_QHF_FH_JSI12i_3	60.709	30.205			0.78303	0.87614	74.072	13	7	Median	1.6033	1.3783	2.9251	2	0	Median	0.72133	0.83955	44.144	4	1	Median	0.57926	0.56322	46.389	3	2	Median	0.82888	0.83849	127.73	4	4	Median	3337900000	1621400000	1716400000	287060000	113940000	173120000	486070000	245980000	240100000	782350000	324150000	458200000	1782400000	937380000	844990000	37802	1674	35553	232026;232027;232028;232029;232030;232031;232032;232033;232034;232035;232036;232037;232038	312043;312044;312045;312046;312047;312048;312049;312050;312051;312052	312049			10	
MYSEIDIK	1	Unmodified	997.47903	0.47903335	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.495	41.04	2	0.003527	36943	160511_QHF_FH_JSI11i_1	71.877	30.375			0.84563	0.96661	22.935	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83359	0.96661	NaN	1	0	Median	0.84563	0.84016	NaN	1	0	Median	1.2591	1.3154	NaN	1	0	Median	434820000	256320000	178500000	0	0	0	153290000	93422000	59865000	133990000	77359000	56627000	147550000	85544000	62004000	37803	2609	35554	232039;232040;232041	312053;312054;312055;312056;312057	312053			5	
MYSFDDVLEEGK	1	Unmodified	1431.6228	0.62279705	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	73.587	73.144	2	1.2487E-05	66758	160511_QHF_FH_JSI12i_1	126.67	115.52			0.88504	0.91309	9.7535	7	6	Median	1.044	0.85165	NaN	1	0	Median	0.76088	0.88979	11.876	2	2	Median	0.9741	0.9589	16.907	2	2	Median	0.91166	0.94089	4.2423	2	2	Median	692910000	355770000	337130000	69658000	34668000	34990000	212650000	116850000	95795000	256440000	120590000	135850000	154160000	83663000	70497000	37804	3799	35555	232042;232043;232044;232045;232046;232047;232048	312058;312059;312060;312061;312062;312063;312064;312065	312061			8	
MYSIEPADRFK	1	Unmodified	1355.6544	0.65437195	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	44.406	44.162	2;3	0.0026121	37594	160511_QHF_FH_JSI12i_3	42.083	28.404			1.351	1.3487	19.767	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5802	1.5099	26.391	2	1	Median	1.2991	1.3487	NaN	1	0	Median	293360000	125210000	168150000	0	0	0	0	0	0	177290000	82707000	94586000	116070000	42505000	73566000	37805	5	35556	232049;232050;232051;232052	312066;312067;312068	312067			3	
MYSNVYYHITSK	1	Unmodified	1504.7021	0.70205043	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.58		1	6						7	2	2	5	5	45.599	40.587	2;3	3.8165E-13	21628	160513_QHF_FH_JSI9Kac_6	132.32	120.73			1.0539	0.99506	30.914	14	8	Median	1.2112	1.046	3.5897	2	0	Median	1.0083	1.1742	60.033	2	1	Median	0.92854	0.9	40.154	5	4	Median	0.95008	0.97093	17.86	5	3	Median	830410000	395480000	434940000	164400000	76793000	87611000	71472000	41386000	30086000	320730000	162660000	158070000	273800000	114630000	159170000	37806	4143	35557	232053;232054;232055;232056;232057;232058;232059;232060;232061;232062;232063;232064;232065;232066	312069;312070;312071;312072;312073;312074;312075;312076;312077;312078;312079;312080;312081;312082;312083;312084;312085;312086	312079			18	
MYSNVYYHITSK	1	Oxidation (M)	1520.697	0.69696505	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	44.534	35.425	3	0.00098377	18529	160513_QHF_FH_JSI12Kac_6	59.871	52.989			1.094	1.1483	6.4153	3	1	Plateau	1.264	1.0967	NaN	1	0	Median	0.88716	1.0627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.094	1.2024	NaN	1	0	Median	30286000	14809000	15477000	10318000	4342500	5975400	6559400	3850500	2708900	0	0	0	13408000	6615600	6792800	37807	4143	35557	232067;232068;232069	312087;312088;312089;312090;312091	312089		2398	5	
MYSTDDGVQFHAFGR	0	Unmodified	1729.7519	0.75185416	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	3	3	3	55.101	54.389	2;3	1.6159E-16	47077	160511_QHF_FH_JSI11i_2	120.96	113.09			1.1541	0.98325	22.761	9	4	Median	1.3909	1.2034	28.578	2	1	Median	0.66342	0.80572	2.4256	2	2	Median	1.0466	1.0219	12.441	2	0	Median	1.1981	1.2263	25.395	3	1	Median	1143300000	568150000	575130000	184800000	93657000	91147000	170910000	100880000	70031000	237820000	124060000	113760000	549740000	249550000	300200000	37808	2609	35558	232070;232071;232072;232073;232074;232075;232076;232077;232078;232079;232080	312092;312093;312094;312095;312096;312097;312098;312099;312100;312101	312097			10	
MYSYPAR	0	Unmodified	886.40072	0.40072345	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.54		4						3	4	3	3	3	2	24.501	18.601	2	0.0030918	15998	160511_QHF_FH_JSI12i_2	106.76	80.652			0.98584	1.0305	19.078	11	0	Median	1.1137	0.93966	6.0677	3	0	Plateau	0.98207	1.1675	11.185	3	0	Median	0.98584	1.0305	10.522	3	0	Median	0.72335	0.79745	29.587	2	0	Median	3006400000	1524800000	1481600000	568240000	266410000	301840000	646870000	315950000	330920000	1074800000	569780000	504970000	716510000	372630000	343880000	37809	882	35559	232081;232082;232083;232084;232085;232086;232087;232088;232089;232090;232091	312102;312103;312104;312105;312106;312107;312108;312109;312110;312111;312112;312113;312114;312115	312103			14	
MYSYPAR	0	Oxidation (M)	902.39564	0.39563807	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	20.186	19.432	2	0.061205	16021	160511_QHF_FH_JSI12i_2	47.067	35.699			0.89583	1.0977	11.295	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89583	1.102	NaN	1	0	Median	1.0794	1.0977	NaN	1	0	Median	0.80854	0.90443	NaN	1	0	Median	326570000	161380000	165180000	0	0	0	82564000	35177000	47387000	125370000	54343000	71023000	118640000	71865000	46774000	37810	882	35559	232092;232093;232094	312116	312116			1	
MYTAIPQSGSPFPGSVQDPGLHVWR	0	Acetyl (Protein N-term)	2768.3381	0.3380702	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.13	3	7							1	3	3	3	2	100.03	99.145	2;3	4.8623E-36	88545	160511_QHF_FH_JSI11i_2	237.4	219.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37811	1490	35560	232095;232096;232097;232098;232099;232100;232101;232102;232103;232104;232105	312117;312118;312119;312120;312121;312122;312123;312124;312125;312126;312127	312124			11	
MYTAIPQSGSPFPGSVQDPGLHVWR	0	Acetyl (Protein N-term);Oxidation (M)	2784.333	0.33298482	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	1	1	0		By MS/MS			2	0		1									1			94.082	93.768	3	0.00209	82988	160511_QHF_FH_JSI10i_2	35.94	33.328			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37812	1490	35560	232106	312128	312128		1173	1	
MYTDIQEPMFSAAR	0	Unmodified	1658.7433	0.74326331	4964	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	2	3	3	66.368	65.662	2	1.7666E-06	57347	160511_QHF_FH_JSI11i_2	160.18	121.16			1.1233	1.1809	36.785	10	5	Median	0.98004	0.85663	57.142	2	1	Median	0.85389	1.0367	2.1111	2	0	Median	1.1496	1.1519	37.389	3	2	Median	1.2441	1.3013	31.078	3	2	Median	486340000	228130000	258210000	77389000	35589000	41800000	112130000	61513000	50618000	161200000	78604000	82597000	135620000	52423000	83197000	37813	4964	35561	232107;232108;232109;232110;232111;232112;232113;232114;232115;232116	312129;312130;312131;312132;312133;312134;312135;312136;312137;312138;312139;312140;312141;312142	312140			14	
MYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSR	0	Oxidation (M)	4077.7957	0.79565241	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			99.261	99.255	3	3.1048E-05	89960	160511_QHF_FH_JSI10i_1	37.409	32.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9039300	0	9039300	0	0	0	9039300	0	9039300	0	0	0	0	0	0	37814	5299	35562	232117	312143	312143		2627	1	
MYTITKGPSK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1224.606	0.60602478	4453	Q9BUT9	FAM195A	Protein FAM195A	yes	yes	1	1	1	1			By MS/MS	By MS/MS	11.3	0.471				2	1							2	1	53.203	43.828	2	0.0094214	18004	160513_QHF_FH_JSI12Kacf_1	41.876	34.308			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37815	4453	35563	232118;232119;232120	312144;312145;312146	312145	3167	2474	3	
MYVFGGWVPLVMDDVK	1	Unmodified	1854.9048	0.90484933	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									3			2	1	97.541	88.123	2;3	3.7177E-32	50312	160513_QHF_FH_JSI11Kac_6	162.6	148.64			1.0699	1.1419	30.171	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4222	1.3665	40.07	2	0	Median	1.0503	1.1419	NaN	1	0	Median	417920000	196650000	221270000	0	0	0	0	0	0	357340000	164120000	193220000	60572000	32528000	28045000	37816	1743	35564	232121;232122;232123	312147;312148	312148			2	
MYVPALIFGQLLTSSNYDDDEK	1	Unmodified	2518.1938	0.19375695	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	100.52	97.665	3	5.9983E-11	54076	160513_QHF_FH_JSI10Kac_6	91.889	84.901			0.50002	0.56604	34.375	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60512	0.72179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.41318	0.44389	NaN	1	1	Median	141930000	96613000	45317000	0	0	0	122080000	80228000	41848000	0	0	0	19854000	16384000	3469300	37817	999	35565	232124;232125	312149;312150	312150			2	
MYVPMTEDIYNAISAK	1	Unmodified	1844.8689	0.86885776	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	97.129	96.896	2;3	6.3125E-11	83375	160511_QHF_FH_JSI12i_2	116.96	110.52			0.99706	0.99223	11.197	8	0	Median	1.0815	0.9087	10.327	2	0	Median	0.80295	0.9625	17.518	2	0	Median	0.97677	0.9805	3.7913	2	0	Median	1.0329	1.1139	2.6866	2	0	Median	441110000	213940000	227170000	128570000	43148000	85417000	101210000	59860000	41349000	110830000	62235000	48597000	100510000	48700000	51808000	37818	228	35566	232126;232127;232128;232129;232130;232131;232132;232133	312151;312152;312153;312154;312155;312156;312157;312158;312159;312160;312161;312162;312163;312164;312165;312166;312167	312153			17	
MYVQTVLDVHK	1	Unmodified	1331.6908	0.69075746	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		61.945	52.896	3	0.0024251	28705	160513_QHF_FH_JSI11Kac_6	60.255	49.35			1.4194	1.5216	15.486	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4347	1.6976	NaN	1	1	Median	1.4042	1.3637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33565000	16123000	17442000	0	0	0	18997000	9447100	9549700	14568000	6676100	7892200	0	0	0	37819	2453	35567	232134;232135	312168;312169	312168			2	
MYVQTVLDVHKK	2	Unmodified	1459.7857	0.78572048	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.145	41.922	4	0.045855	35771	160511_QHF_FH_JSI12i_3	19.199	14.731			0.45875	0.4754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45875	0.4754	NaN	1	0	Median	37410000	20965000	16445000	0	0	0	0	0	0	0	0	0	37410000	20965000	16445000	37820	2453	35568	232136	312170	312170			1	
MYYFGIAALDR	0	Unmodified	1318.638	0.63799361	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			83.138	75.529	2	6.7062E-05	42684	160513_QHF_FH_JSI10Kac_6	118.71	90.699			1.1372	0.98587	32.208	3	3	Median	1.2561	1.082	13.155	2	2	Median	0.53687	0.63426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	341290000	190850000	150440000	173350000	84713000	88635000	167940000	106140000	61801000	0	0	0	0	0	0	37821	21	35569	232137;232138;232139	312171;312172;312173	312173			3	
NAADKER	1	Acetyl (K)	844.40389	0.40389457	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	5.28	-1.8719	2	0.036757	1705	160513_QHF_FH_JSI12Kac_3	66.073	24.421			0.53249	0.57596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53249	0.57596	NaN	1	0	Median	3753300	2576900	1176300	0	0	0	0	0	0	0	0	0	3753300	2576900	1176300	37822	4717	35570	232140	312174	312174			1	
NAADMVLLDDNFASIVTGVEEGR	0	Unmodified	2435.1639	0.1638538	1828	P54707	ATP12A	Potassium-transporting ATPase alpha chain 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		103.52	103.47	2	2.536E-07	94175	160511_QHF_FH_JSI11i_1	116.43	104.74			0.49184	0.47648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49184	0.47648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12953000	10848000	2104700	0	0	0	0	0	0	12953000	10848000	2104700	0	0	0	37823	1828	35571	232141	312175	312175			1	
NAADPISGDFK	1	Unmodified	1133.5353	0.53530267	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.794	39.337	2	0.0095708	34749	160511_QHF_FH_JSI9i_1	48.44	30			1.6712	1.7152	48.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2387	1.2213	NaN	1	1	Median	2.2549	2.4088	NaN	1	1	Median	236490000	71139000	165350000	0	0	0	0	0	0	128660000	44764000	83895000	107830000	26375000	81459000	37824	1576	35572	232142;232143;232144;232145	312176;312177;312178;312179	312179			4	
NAADSYFSLLQGFINSLDESTQESK	1	Unmodified	2763.2875	0.28753399	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.58	103.48	3	3.7999E-23	91251	160511_QHF_FH_JSI11i_2	136.57	129.84			0.82269	0.8236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82269	0.8236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26990000	18618000	8371100	0	0	0	0	0	0	26990000	18618000	8371100	0	0	0	37825	2992	35573	232146	312180	312180			1	
NAAEELKPR	1	Unmodified	1026.5458	0.54580778	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	12.803	12.249	2	0.015555	9554	160511_QHF_FH_JSI11i_2	65.404	43.318			0.86701	0.79871	18.175	3	0	Median	0.86701	0.72647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79766	0.79871	NaN	1	0	Median	0.90538	1.0323	NaN	1	0	Median	234350000	120720000	113630000	62211000	33641000	28570000	0	0	0	106900000	52192000	54708000	65238000	34890000	30348000	37826	2092	35574	232147;232148;232149	312181;312182	312182			2	
NAAEELKPR	1	Acetyl (K)	1068.5564	0.55637247	2092	P78406	RAE1	mRNA export factor	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			36.197	27.442	2	0.0061673	15383	160513_QHF_FH_JSI10Kac_3	76.827	33.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1800200	1800200	0	0	0	0	1800200	1800200	0	0	0	0	0	0	0	37827	2092	35574	232150	312183	312183	2177		1	
NAAGALDLLK	1	Unmodified	984.5604	0.56039521	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.69	9	2	1					1		3	2	5	3	56.341	54.905	2	0.0005431	53863	160511_QHF_FH_JSI10i_1	71.349	57.77			1.077	1.1016	75.676	13	9	Median	0.66586	0.57611	58.927	3	2	Median	0.79602	0.95342	149.18	2	1	Median	1.6184	1.5829	79.652	5	4	Median	1.077	1.1016	67.593	3	2	Median	1165600000	621150000	544460000	280770000	159610000	121160000	159580000	88906000	70672000	558180000	293580000	264590000	167090000	79052000	88035000	37828	1220	35575	232151;232152;232153;232154;232155;232156;232157;232158;232159;232160;232161;232162;232163	312184;312185;312186;312187;312188;312189;312190;312191;312192;312193;312194	312189			11	
NAAHAIQK	1	Unmodified	851.46135	0.46134987	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	2	1	2	1	5.1902	3.2852	2	0.0030818	2614	160511_QHF_FH_JSI9i_2	81.784	65.63			1.0852	1.064	65.458	6	5	Median	1.3341	1.1299	2.4044	2	2	Median	2.2509	2.7876	NaN	1	1	Median	0.48415	0.48197	0.8234	2	1	Median	0.90746	1.0192	NaN	1	1	Median	664610000	326520000	338090000	134680000	54072000	80605000	112100000	29756000	82341000	257360000	164650000	92707000	160480000	78040000	82441000	37829	107	35576	232164;232165;232166;232167;232168;232169	312195;312196;312197;312198;312199;312200	312198			6	
NAAHALPTTLGALER	0	Unmodified	1533.8263	0.82633974	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	53.729	52.762	2;3	0.00012429	45300	160511_QHF_FH_JSI12i_2	97.911	78.15			0.81406	0.88932	8.7281	8	1	Median	1.0013	0.86156	3.5757	2	0	Median	0.7803	0.95221	3.387	2	1	Median	0.89533	0.90577	12.147	2	0	Median	0.75524	0.82531	11.472	2	0	Median	1011500000	592420000	419120000	174290000	86100000	88193000	238360000	164610000	73748000	384190000	231320000	152870000	214700000	110390000	104310000	37830	3593	35577	232170;232171;232172;232173;232174;232175;232176;232177	312201;312202;312203;312204;312205;312206;312207;312208;312209;312210;312211;312212	312202			12	
NAALDVEPIHAFR	0	Unmodified	1451.7521	0.75211216	4958	Q9NRL3	STRN4	Striatin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.609	58.687	3	0.0010161	51800	160511_QHF_FH_JSI10i_2	54.898	50.049			1.01	1.0768	29.619	4	1	Median	0.77687	0.66886	NaN	1	1	Median	1.0639	1.3013	NaN	1	0	Median	0.97177	0.97157	NaN	1	0	Median	1.0498	1.1934	NaN	1	0	Median	131190000	57996000	73197000	11762000	6896700	4864900	38709000	16713000	21996000	45757000	20346000	25411000	34964000	14040000	20924000	37831	4958	35578	232178;232179;232180;232181	312213;312214;312215;312216;312217	312217			5	
NAALFALGQFSENLQPHISSYSR	0	Unmodified	2549.2663	0.26628546	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	2	3	1	1	98.393	97.502	3	8.6876E-12	83019	160511_QHF_FH_JSI10i_3	110.44	103.25			1.0591	1.2035	42.182	7	5	Median	0.99683	0.85558	55.959	2	2	Median	0.58252	0.68799	38.802	3	2	Plateau	0.65964	0.59302	NaN	1	0	Median	1.4512	1.4565	NaN	1	1	Median	328270000	178970000	149300000	48514000	20385000	28129000	189130000	115200000	73932000	33851000	23583000	10268000	56770000	19798000	36972000	37832	3741	35579	232182;232183;232184;232185;232186;232187;232188	312218;312219;312220;312221;312222;312223;312224;312225	312219			8	
NAALNTIVTVYNVHGDQVFK	1	Unmodified	2202.1433	0.14331678	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.67	6.6		2							1	1	1		1	83.698	80.265	3	7.7969E-06	39848	160513_QHF_FH_JSI9Kac_6	131.18	119.93			1.2844	1.3048	13.506	3	3	Median	1.2844	1.1027	NaN	1	1	Median	1.1003	1.3048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.343	1.4404	NaN	1	1	Median	154750000	73666000	81080000	62554000	36600000	25954000	49756000	25579000	24177000	0	0	0	42436000	11487000	30949000	37833	2485	35580	232189;232190;232191	312226;312227;312228	312228			3	
NAAQELATLLLSLPAPASVQQQSK	1	Unmodified	2477.349	0.34895246	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	102.58	102.49	3;4	7.9079E-07	90380	160511_QHF_FH_JSI9i_2	68.689	64.24			1.0827	1.1918	26.599	3	0	Median	1.5728	1.3357	NaN	1	0	Median	0.66379	0.80449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0827	1.1918	NaN	1	0	Median	150900000	68347000	82557000	54970000	24473000	30497000	20831000	8709900	12121000	0	0	0	75103000	35164000	39939000	37834	2947	35581	232192;232193;232194	312229;312230;312231	312230			2	
NAAQFLLSTNDK	1	Unmodified	1320.6674	0.66737948	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.46		5						4		2	2	3	2	58.497	54.639	2	1.8826E-05	47896	160511_QHF_FH_JSI9i_2	116.55	96.243			0.82446	0.83634	48.162	7	7	Median	0.95721	0.83634	NaN	1	1	Median	0.82446	1.0191	NaN	1	1	Median	0.76337	0.7298	57.001	3	3	Median	1.0641	1.1914	79.657	2	2	Median	866830000	397070000	469760000	124930000	49100000	75827000	182270000	93373000	88894000	230820000	91645000	139170000	328820000	162950000	165860000	37835	2052	35582	232195;232196;232197;232198;232199;232200;232201;232202;232203	312232;312233;312234;312235;312236;312237;312238;312239;312240	312235			9	
NAAQVLVGIPLETGQK	1	Unmodified	1636.9148	0.91482039	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								4	4	4	4	77.673	77.028	2;3	6.3334E-07	70048	160511_QHF_FH_JSI11i_1	125.28	90.905			0.91062	0.87381	19.883	16	5	Median	1.0587	0.92323	12.437	4	1	Median	0.62756	0.74	7.1765	4	2	Median	0.91062	0.90622	19.287	4	1	Median	1.019	1.1167	28.524	4	1	Median	696290000	363430000	332860000	120760000	61630000	59132000	188630000	104720000	83912000	214690000	108950000	105740000	172210000	88133000	84075000	37836	4411	35583	232204;232205;232206;232207;232208;232209;232210;232211;232212;232213;232214;232215;232216;232217;232218;232219	312241;312242;312243;312244;312245;312246;312247;312248;312249;312250;312251;312252;312253;312254;312255;312256;312257;312258;312259;312260;312261;312262;312263	312243			22	
NAAVVMAVAQLYWHISPK	1	Oxidation (M)	2013.0506	0.050602368	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	92.843	84.274	3	1.0662E-05	45248	160513_QHF_FH_JSI12Kac_6	147.16	129.92			0.072865	0.087483	243.96	5	5	Median	0.16454	0.14005	NaN	1	1	Median	0.072865	0.087483	NaN	1	1	Median	0.060158	0.058828	NaN	1	1	Median	0.54515	0.57632	439.03	2	2	Median	465860000	410460000	55399000	93223000	83497000	9725800	152600000	141780000	10819000	90084000	87001000	3082900	129950000	98176000	31772000	37837	107	35584	232220;232221;232222;232223;232224	312264;312265;312266;312267;312268	312266		45	5	
NAAVVMAVAQLYWHISPK	1	Unmodified	1997.0557	0.055687746	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	2	1	96.139	87.779	2;3	1.0863E-121	52102	160513_QHF_FH_JSI10Kac_6	292.83	267.5			1.1757	1.2162	182.95	8	8	Median	1.0028	0.85009	157.48	3	3	Median	0.13609	0.16135	276.48	2	2	Median	1.8893	1.7978	46.08	2	2	Median	5.072	5.3808	NaN	1	1	Median	3119400000	1316900000	1802600000	993520000	483610000	509900000	515120000	312590000	202530000	1268300000	464430000	803920000	342450000	56244000	286200000	37838	107	35584	232225;232226;232227;232228;232229;232230;232231;232232	312269;312270;312271;312272;312273;312274;312275;312276	312276			8	
NAAYYSPHGHILVLAGFGNLR	0	Unmodified	2269.1756	0.17561996	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	78.511	70.607	2;3;4	3.1706E-44	39048	160513_QHF_FH_JSI10Kac_6	263.6	232.08			1.2152	1.1602	31.392	10	3	Median	1.2402	1.0711	5.9284	2	0	Median	1.1136	1.3203	39.818	4	2	Median	1.3937	1.3505	15.385	2	0	Median	0.86223	0.9255	6.4745	2	1	Median	2497500000	1268000000	1229600000	821220000	423250000	397970000	1225200000	596880000	628360000	203690000	95409000	108280000	247400000	152410000	94992000	37839	4535	35585	232233;232234;232235;232236;232237;232238;232239;232240;232241;232242	312277;312278;312279;312280;312281;312282;312283;312284;312285;312286;312287;312288;312289;312290;312291;312292;312293	312292			17	
NADDDRIPR	0	Unmodified	1070.5105	0.51048491	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	10.91	10.415	2;3	0.00011509	7981	160511_QHF_FH_JSI12i_2	111.46	89.218			0.95061	1.0192	16.836	8	0	Median	1.3348	1.1445	12.374	2	0	Median	0.65953	0.79755	0.4773	2	0	Median	0.91505	0.93827	15.059	2	0	Median	0.95376	1.0661	9.7242	2	0	Median	1643300000	831340000	811960000	312480000	149540000	162940000	320860000	185750000	135110000	582450000	284410000	298040000	427500000	211630000	215870000	37840	2502	35586	232243;232244;232245;232246;232247;232248;232249;232250	312294;312295;312296;312297;312298;312299;312300;312301;312302;312303;312304;312305	312294			12	
NADELVK	1	Unmodified	787.40758	0.40758296	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			2	1	3	1	15.377	14.88	2	0.014343	12195	160511_QHF_FH_JSI9i_1	67.032	42.034			0.17805	0.17978	187.71	6	6	Median	1.1212	0.91459	287.96	2	2	Median	0.13304	0.15521	NaN	1	1	Median	0.92038	0.89072	205.54	2	2	Median	0.10129	0.10775	NaN	1	1	Median	4906000000	3095000000	1810900000	1306700000	594260000	712410000	1024700000	810280000	214470000	1641200000	919570000	721600000	933390000	770930000	162460000	37841	1132	35587	232251;232252;232253;232254;232255;232256;232257	312306;312307;312308;312309;312310;312311;312312	312312			7	
NADGTICYDSTHYK	1	Unmodified	1643.6886	0.68858521	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.629	26.265	3	0.021724	22034	160511_QHF_FH_JSI11i_2	36.392	32.001			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15769000	15769000	0	0	0	0	0	0	0	15769000	15769000	0	0	0	0	37842	1054	35588	232258	312313	312313			1	
NADGYKLDK	2	Acetyl (K)	1064.5138	0.51383895	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	30.924	22.486	2	0.018827	13375	160513_QHF_FH_JSI12Kac_3	54.982	21.719			0.41144	0.40696	54.804	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95101	1.125	NaN	1	0	Median	0.41144	0.40696	NaN	1	0	Median	0.91638	0.96438	NaN	1	0	Median	45747000	31013000	14734000	0	0	0	11194000	6148600	5045800	23038000	17947000	5091600	11515000	6917800	4596900	37843	1867	35589	232259;232260;232261	312314;312315;312316;312317	312316	1885;1887		4	
NADLNAQTVVK	1	Unmodified	1171.6197	0.619701	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	30.893	30.36	2	1.9394E-06	27229	160511_QHF_FH_JSI11i_1	121.5	103.19			1.6569	1.6725	128.93	6	2	Median	3.5324	2.9012	NaN	1	1	Median	0.39636	0.47089	NaN	1	0	Median	0.66421	0.6495	146.99	2	1	Median	3.471	3.5949	121.43	2	0	Median	400260000	217540000	182730000	56418000	27876000	28542000	74625000	59815000	14810000	113960000	70615000	43342000	155260000	59229000	96033000	37844	5646	35590	232262;232263;232264;232265;232266;232267	312318;312319;312320;312321;312322;312323	312319			6	
NADMSEEMQQDSVECATQALEK	1	Unmodified	2513.0356	0.035618102	2054	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	3	2	3	70.662	70.201	2;3	9.4075E-103	63794	160511_QHF_FH_JSI11i_1	265.45	253.48			1.0956	1.0781	30.177	9	5	Median	1.1495	0.95388	NaN	1	0	Median	1.08	1.2276	33.941	3	3	Median	1.0408	1.0166	8.3047	2	0	Median	1.4521	1.5196	48.484	3	2	Plateau	810340000	419790000	390550000	57701000	38114000	19587000	179010000	88200000	90814000	314270000	157370000	156900000	259350000	136100000	123250000	37845	2054	35591	232268;232269;232270;232271;232272;232273;232274;232275;232276	312324;312325;312326;312327;312328;312329;312330;312331;312332;312333;312334;312335	312324			12	
NADPILISLK	1	Unmodified	1082.6336	0.63356015	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				67.676	66.778	2	0.01557	58752	160511_QHF_FH_JSI9i_2	51.268	43.622			0.82886	0.7209	NaN	1	1	Median	0.82886	0.7209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31891000	19030000	12861000	31891000	19030000	12861000	0	0	0	0	0	0	0	0	0	37846	5411	35592	232277	312336	312336			1	
NADQVEK	1	Unmodified	802.3821	0.38209649	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.0629	4.7725	2	0.017489	2705	160511_QHF_FH_JSI12i_1	62.659	9.9754			2.7922	3.0396	68.518	2	2	Median	NaN	NaN	NaN	0	0	Median	4.4082	4.9343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7686	1.8724	NaN	1	1	Median	73893000	21653000	52240000	0	0	0	33230000	8466000	24764000	0	0	0	40664000	13187000	27477000	37847	416	35593	232278;232279	312337;312338	312337			2	
NADSGVHLNR	0	Unmodified	1081.5265	0.52646932	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	10.242	9.7792	2	0.011485	7447	160511_QHF_FH_JSI12i_2	46.39	33.863			0.68627	0.76258	6.9344	3	2	Median	NaN	NaN	NaN	0	0	Median	0.62432	0.76076	NaN	1	1	Median	0.80688	0.85886	NaN	1	1	Median	0.68627	0.76258	NaN	1	0	Median	94426000	54199000	40227000	0	0	0	26973000	16342000	10631000	39010000	22427000	16583000	28443000	15430000	13013000	37848	3128	35594	232280;232281;232282	312339;312340;312341	312339			3	
NADVELQQR	0	Unmodified	1071.5309	0.530886	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	2	3	2	19.183	16.177	2	1.8836E-06	13841	160511_QHF_FH_JSI10i_1	129.42	89.42			1.0379	1.0375	40.486	8	3	Median	2.3203	1.9149	NaN	1	1	Median	0.85207	0.99821	34.72	2	0	Median	1.0172	0.98229	57.723	3	2	Median	0.96341	1.0285	8.9614	2	0	Median	833540000	351930000	481610000	140490000	50643000	89849000	171220000	77237000	93982000	323190000	137880000	185310000	198630000	86167000	112470000	37849	726;635	35595	232283;232284;232285;232286;232287;232288;232289;232290;232291	312342;312343;312344;312345;312346;312347;312348;312349;312350;312351	312347			10	
NAEAVLQSPGLSGK	1	Unmodified	1369.7201	0.72014333	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			3	2	3	2	47.318	45.157	2	1.3968E-05	40140	160511_QHF_FH_JSI9i_1	119.69	105.48			5.024	5.2053	81.704	6	6	Median	2.905	2.3695	149.28	2	2	Median	5.667	6.6439	NaN	1	1	Median	3.7526	3.5146	27.445	2	2	Median	6.2151	6.3494	NaN	1	1	Median	272530000	50630000	221900000	64067000	9635700	54431000	56452000	10647000	45805000	74535000	19252000	55283000	77475000	11095000	66380000	37850	2344	35596	232292;232293;232294;232295;232296;232297;232298;232299;232300;232301	312352;312353;312354;312355;312356;312357;312358;312359;312360;312361	312357			10	
NAEEFTK	1	Unmodified	837.38685	0.38684752	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	12.649	12.204	2	0.023109	9772	160511_QHF_FH_JSI11i_1	58.917	34.945			0.094635	0.088872	53.976	6	6	Median	0.10253	0.084907	NaN	1	1	Median	0.060254	0.072741	NaN	1	1	Median	0.13316	0.1302	90.953	2	2	Median	0.12325	0.13344	51.024	2	2	Median	2485900000	2141900000	343980000	511450000	414680000	96762000	617490000	565170000	52318000	682550000	602770000	79779000	674440000	559320000	115120000	37851	2071	35597	232302;232303;232304;232305;232306;232307	312362;312363;312364;312365;312366;312367	312362			6	
NAEEFTKK	2	Acetyl (K)	1007.4924	0.49237523	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	1	0	0	1				By MS/MS	14	0							1						1	27.964	19.926	2	0.053103	12135	160513_QHF_FH_JSI12Kac_4	58.981	31.727			0.062524	0.067828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.062524	0.067828	NaN	1	1	Median	7954500	7028100	926330	0	0	0	0	0	0	0	0	0	7954500	7028100	926330	37852	2071	35598	232308	312368	312368			1	
NAEKYAEEDR	1	Acetyl (K)	1265.5524	0.5524093	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.617					1	6	4			1	4	1	5	22.84	14.117	2	7.2973E-10	9965	160513_QHF_FH_JSI12Kac_3	134.57	117.13			0.90041	1.0053	334.97	8	6	Median	1.5025	1.2247	NaN	1	0	Median	0.67389	0.82516	462.65	3	3	Median	0.67933	0.67216	NaN	1	0	Median	1.1934	1.2846	421.43	3	3	Median	359330000	174510000	184830000	85243000	34751000	50492000	97500000	59300000	38200000	73978000	39779000	34199000	102610000	40677000	61936000	37853	1480	35599	232309;232310;232311;232312;232313;232314;232315;232316;232317;232318;232319	312369;312370;312371;312372;312373;312374;312375;312376;312377;312378;312379;312380	312375	1469		12	
NAEKYAEEDRR	1	Acetyl (K)	1421.6535	0.65352033	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.539							2	7	1	3	3	2	2	20.232	11.229	2;3	1.6556E-22	8289	160513_QHF_FH_JSI12Kac_4	181.4	165.79			0.96947	1.0624	52.736	9	0	Median	1.3587	1.1147	50.283	3	0	Median	0.96947	1.1609	31.478	3	0	Plateau	0.892	0.86739	54.049	2	0	Median	0.3984	0.43908	NaN	1	0	Median	247410000	125020000	122400000	55911000	17620000	38291000	45548000	25538000	20010000	75507000	29510000	45997000	70447000	52348000	18099000	37854	1480	35600	232320;232321;232322;232323;232324;232325;232326;232327;232328;232329	312381;312382;312383;312384;312385;312386;312387;312388	312383	1469		8	
NAELDPVTTEEQVLDVK	1	Unmodified	1898.9473	0.94730231	646	O95140	MFN2	Mitofusin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	77.476	76.938	2	0.00062286	70110	160511_QHF_FH_JSI12i_1	65.043	51.137			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37855	646	35601	232330	312389	312389			1	
NAEMHKNK	2	Acetyl (K)	1012.476	0.47601366	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15	0								3			1	1	1	6.0871	-3.359	3	0.0054526	2138	160513_QHF_FH_JSI11Kac_5	56.434	44.387			0.5036	0.55721	68.904	3	0	Median	NaN	NaN	NaN	0	0	Median	0.98788	1.1898	NaN	1	0	Median	0.30503	0.30062	NaN	1	0	Median	0.5036	0.55721	NaN	1	0	Median	55115000	40071000	15044000	0	0	0	7460600	3465300	3995300	42475000	33032000	9442600	5180100	3574100	1605900	37856	2094	35602	232331;232332;232333	312390;312391	312391	2202		2	
NAENAIEALK	1	Unmodified	1071.556	0.55603811	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	3	2	3	41.292	40.596	2	6.0103E-05	36471	160511_QHF_FH_JSI10i_1	103.55	68.251			1.044	1.1505	149.07	9	9	Median	6.4346	5.2777	NaN	1	1	Median	0.3175	0.38375	170.2	3	3	Median	1.1186	1.0982	221.33	2	2	Median	1.044	1.1505	148.02	3	3	Median	1276400000	710150000	566290000	100730000	40436000	60298000	436220000	263740000	172480000	370190000	213390000	156800000	369300000	192580000	176720000	37857	1103	35603	232334;232335;232336;232337;232338;232339;232340;232341;232342	312392;312393;312394;312395;312396;312397;312398;312399;312400	312398			9	
NAEPDEQDFEK	1	Unmodified	1320.547	0.54698957	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.316	24.154	2	0.0084383	21158	160511_QHF_FH_JSI11i_1	59.542	51.499			1.0934	1.0451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0934	1.0451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20916000	9086200	11830000	0	0	0	0	0	0	20916000	9086200	11830000	0	0	0	37858	2520	35604	232343	312401	312401			1	
NAEPLINLDVNNPDFK	1	Unmodified	1811.9054	0.90537792	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	4	2	2	80.138	79.659	2;3	7.1413E-12	72120	160511_QHF_FH_JSI10i_1	114.43	91.712			0.94706	0.9233	31.86	10	4	Median	1.0606	0.88454	53.802	3	2	Median	1.1161	1.332	37.846	3	2	Plateau	0.94504	0.91206	11.655	2	0	Median	0.94706	0.97943	2.2792	2	0	Median	542120000	278400000	263730000	87721000	41365000	46356000	213530000	113050000	100480000	107510000	56515000	50993000	133370000	67469000	65897000	37859	5486	35605	232344;232345;232346;232347;232348;232349;232350;232351;232352;232353;232354	312402;312403;312404;312405;312406;312407;312408;312409;312410;312411;312412;312413;312414;312415;312416;312417;312418;312419;312420	312416			19	
NAEQAATQLK	1	Unmodified	1072.5513	0.55128709	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	1	3	3	18.03	15.611	2	6.9086E-13	13027	160511_QHF_FH_JSI9i_1	131.5	42.361			0.73967	0.6079	104.72	7	7	Median	0.73967	0.6079	NaN	1	1	Median	2.3721	2.8739	NaN	1	1	Median	1.0396	1.0282	136.45	2	2	Median	0.25353	0.27189	88.814	3	3	Median	1463900000	743690000	720250000	315540000	171270000	144280000	287840000	132440000	155410000	251350000	85690000	165660000	609200000	354300000	254910000	37860	3328	35606	232355;232356;232357;232358;232359;232360;232361;232362;232363	312421;312422;312423;312424;312425;312426;312427;312428;312429	312428			9	
NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK	1	Unmodified	3365.4516	0.45159222	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	40.757	40.124	3;4	9.4327E-55	36335	160511_QHF_FH_JSI11i_1	167.16	161.96			1.1797	1.0102	25.782	5	0	Median	1.1797	0.97139	NaN	1	0	Median	0.85804	0.99586	NaN	1	0	Median	1.0264	1.0102	NaN	1	0	Median	1.4073	1.499	24.691	2	0	Median	848330000	380550000	467770000	111750000	46291000	65460000	208340000	107870000	100460000	238390000	115200000	123190000	289850000	111190000	178660000	37861	1417	35607	232364;232365;232366;232367;232368	312430;312431;312432;312433;312434;312435;312436;312437;312438;312439;312440;312441;312442;312443;312444;312445	312431			16	
NAEQYKDQADK	2	Acetyl (K)	1350.6052	0.60517315	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1			By MS/MS		12.5	0.5					1	1						2		26.209	18.752	2	0.0017801	11550	160513_QHF_FH_JSI11Kac_3	80.763	71.406			0.33924	0.33014	32.638	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33924	0.33014	32.638	2	2	Median	NaN	NaN	NaN	0	0	Median	8062500	6277000	1785500	0	0	0	0	0	0	8062500	6277000	1785500	0	0	0	37862	1436	35608	232369;232370	312446;312447	312447	1408		2	
NAESNAELK	1	Unmodified	974.46689	0.46688876	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.37	4	1	4		2	3	1			2	4	4	5	9.3449	6.5637	2	2.0133E-05	5919	160511_QHF_FH_JSI11i_1	106.93	88.891			0.89116	0.97466	30.849	14	3	Median	1.5708	1.3185	4.358	2	0	Median	0.93039	1.1226	16.029	4	0	Median	0.89455	0.88009	45.591	4	2	Median	0.78693	0.82676	14.633	4	1	Median	19131000000	9464900000	9666400000	4515500000	1892500000	2622900000	4550100000	2407100000	2143000000	5425000000	2602300000	2822700000	4640700000	2562900000	2077800000	37863	1143	35609	232371;232372;232373;232374;232375;232376;232377;232378;232379;232380;232381;232382;232383;232384;232385	312448;312449;312450;312451;312452;312453;312454;312455;312456;312457;312458;312459;312460;312461;312462;312463	312449			16	
NAEVTGTMSQDTEVDMK	1	Unmodified	1854.7975	0.79754331	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	3	2	43.592	42.87	2	6.2304E-81	37789	160511_QHF_FH_JSI9i_1	247.32	244.37			0.8828	0.9536	55.013	9	4	Median	1.1983	0.98146	28.506	3	2	Plateau	0.88149	1.0342	11.472	2	0	Median	0.45113	0.43777	111.72	2	1	Median	0.98578	1.009	19.48	2	1	Median	1024400000	507220000	517170000	306210000	133720000	172500000	258490000	136200000	122290000	228020000	117490000	110530000	231660000	119810000	111850000	37864	895	35610	232386;232387;232388;232389;232390;232391;232392;232393;232394;232395	312464;312465;312466;312467;312468;312469;312470;312471;312472;312473;312474;312475;312476;312477;312478;312479;312480	312478			17	
NAEVTGTMSQDTEVDMK	1	Oxidation (M)	1870.7925	0.79245793	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	6									3	2		1	34.222	33.374	2	1.3935E-10	28733	160511_QHF_FH_JSI10i_1	107.99	101.89			1.1048	1.1686	43.494	3	3	Median	2.802	2.2581	NaN	1	1	Median	0.85037	0.99314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1048	1.1686	NaN	1	1	Median	123360000	51704000	71660000	39539000	4973900	34565000	47810000	28987000	18823000	0	0	0	36015000	17743000	18272000	37865	895	35610	232396;232397;232398;232399;232400;232401	312481;312482;312483;312484;312485;312486	312483		457;458	6	
NAEVTGTMSQDTEVDMK	1	2 Oxidation (M)	1886.7874	0.78737255	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	2	0	By MS/MS				1	0	1									1				43.744	42.527	2	3.6663E-06	37744	160511_QHF_FH_JSI9i_1	127.36	105.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16196000	0	16196000	16196000	0	16196000	0	0	0	0	0	0	0	0	0	37866	895	35610	232402	312487;312488	312488		457;458	2	
NAFALLVEMGHAFLR	0	Unmodified	1687.8868	0.8868315	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	98.155	89.731	3	5.1651E-05	48748	160513_QHF_FH_JSI12Kac_6	112.17	99.79			0.13001	0.1286	211.29	6	6	Median	0.087984	0.075971	NaN	1	1	Median	1.0431	1.2211	349.93	2	2	Median	0.54829	0.51758	173.54	2	2	Median	0.10501	0.109	NaN	1	1	Median	1175600000	649000000	526610000	222290000	108250000	114040000	439760000	248240000	191520000	286080000	182310000	103760000	227470000	110190000	117280000	37867	2904	35611	232403;232404;232405;232406;232407;232408;232409;232410	312489;312490;312491;312492;312493;312494;312495;312496	312493			8	
NAFASVILFGTNNSSSISGVWVFR	0	Unmodified	2572.3074	0.30742199	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				106.87	97.64	3	0.0035558	56328	160513_QHF_FH_JSI9Kac_6	52.898	44.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37868	1284	35612	232411	312497	312497			1	
NAFDYFNNMR	0	Unmodified	1290.5452	0.54515585	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.838	65.938	2	5.1307E-06	58213	160511_QHF_FH_JSI9i_2	109.11	105.76			1.1133	1.0895	15.461	4	0	Median	1.0659	0.88788	NaN	1	0	Median	0.80018	1.0039	NaN	1	0	Median	1.169	1.1824	NaN	1	0	Median	1.1628	1.2446	NaN	1	0	Median	432020000	219860000	212150000	68423000	34082000	34340000	106580000	61100000	45479000	174760000	81242000	93519000	82252000	43437000	38815000	37869	2902	35613	232412;232413;232414;232415	312498;312499;312500;312501;312502;312503;312504	312501			6	
NAFGLHLIDFMSEILK	1	Unmodified	1846.9651	0.9651414	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	1		3	101.06	96.2	2;3	1.5173E-07	51678	160513_QHF_FH_JSI9Kac_6	110.22	93.138			0.84761	0.91657	39.286	5	3	Median	1.4956	1.2591	NaN	1	0	Median	0.38843	0.44714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97529	1.0258	14.768	3	2	Plateau	399120000	219250000	179870000	128050000	54766000	73284000	183390000	113320000	70067000	0	0	0	87684000	51166000	36518000	37870	2594	35614	232416;232417;232418;232419;232420	312505;312506;312507;312508;312509;312510;312511	312505			7	
NAFMMLIHADQDR	0	Unmodified	1560.7177	0.71771726	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			76.316	68.457	2;3	1.5692E-07	36448	160513_QHF_FH_JSI9Kac_6	165.7	140.08			3.3586	2.9094	NaN	1	1	Median	3.3586	2.9094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73497000	37073000	36424000	46822000	10398000	36424000	26675000	26675000	0	0	0	0	0	0	0	37871	1804	35615	232421;232422;232423	312512;312513;312514	312513			3	
NAFVTGIAR	0	Unmodified	947.51886	0.51886475	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS				2	0		1								1				39.457	38.41	2	0.060913	33603	160511_QHF_FH_JSI9i_2	42.075	23.344			0.90407	0.7787	NaN	1	1	Median	0.90407	0.7787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44866000	23216000	21650000	44866000	23216000	21650000	0	0	0	0	0	0	0	0	0	37872	3229;4066	35616	232424	312515	312515			1	
NAFYIGSYQQCINEAQR	0	Unmodified	2060.9374	0.9374231	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	66.098	65.083	2	1.2386E-65	55956	160511_QHF_FH_JSI12i_2	232.25	217.9			1.3165	1.5236	25.969	2	1	Median	NaN	NaN	NaN	0	0	Median	1.487	1.8307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1655	1.268	NaN	1	0	Median	68813000	24973000	43840000	8711200	0	8711200	22487000	9302200	13185000	0	0	0	37615000	15671000	21944000	37873	178	35617	232425;232426;232427	312516;312517;312518;312519;312520	312516			5	
NAGAFGFNISFLCK	1	Unmodified	1544.7446	0.74458394	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.2	100.05	2	0.014911	87746	160511_QHF_FH_JSI11i_2	53.6	42.388			0.60052	0.59448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60052	0.59448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26605000	16223000	10382000	0	0	0	0	0	0	26605000	16223000	10382000	0	0	0	37874	432	35618	232428	312521	312521			1	
NAGAVIGK	1	Unmodified	728.41809	0.41808807	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	5.12	6	3	2				3			3	5	4	2	13.848	11.688	2	0.0064953	9956	160511_QHF_FH_JSI10i_1	71.296	36.403			0.082022	0.087691	236.69	14	14	Median	0.1067	0.085457	302.13	3	3	Median	0.084059	0.10062	222.82	5	5	Median	0.067248	0.065547	295.36	4	4	Median	0.38709	0.4179	277.74	2	2	Median	7716500000	5107000000	2609500000	1592800000	955940000	636850000	2646800000	1680500000	966320000	2715800000	1795600000	920160000	761110000	674940000	86173000	37875	1975	35619	232429;232430;232431;232432;232433;232434;232435;232436;232437;232438;232439;232440;232441;232442	312522;312523;312524;312525;312526;312527;312528;312529;312530;312531;312532;312533;312534;312535	312528			14	
NAGDLAPAGGAASASTDEAADAESGTR	0	Unmodified	2432.0688	0.068767445	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	40.88	40.408	2	2.5875E-14	36534	160511_QHF_FH_JSI12i_1	112.56	106.12			0.61131	0.61114	47.655	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89279	0.85602	NaN	1	0	Median	0.41857	0.43631	NaN	1	1	Median	57296000	29344000	27951000	0	0	0	0	0	0	37279000	14532000	22747000	20017000	14812000	5204600	37876	5113	35620	232443;232444;232445	312536;312537;312538	312538			3	
NAGFTPQER	0	Unmodified	1018.4832	0.48320752	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	2	3	16.757	14.689	2	0.00016333	12588	160511_QHF_FH_JSI10i_2	88.181	70.195			1.0237	1.0952	15.54	11	2	Median	1.1627	0.96706	16.958	3	0	Plateau	0.87152	1.0557	12.728	3	1	Plateau	1.036	1.0279	10.58	2	0	Median	1.0237	1.0991	10.528	3	1	Median	3041200000	1517700000	1523500000	554720000	247210000	307500000	880130000	479400000	400730000	869940000	419830000	450110000	736460000	371270000	365190000	37877	1294	35621	232446;232447;232448;232449;232450;232451;232452;232453;232454;232455;232456	312539;312540;312541;312542;312543;312544;312545;312546;312547;312548;312549;312550;312551;312552;312553;312554	312554			16	
NAGLAFIELVNEGR	0	Unmodified	1501.7889	0.7888916	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	93.295	92.977	2	0.00095421	80109	160511_QHF_FH_JSI12i_2	80.69	64.116			0.16419	0.17019	20.064	2	2	Median	0.23312	0.19613	NaN	1	1	Median	0.11564	0.14768	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20891000	17444000	3447000	8652000	6837300	1814700	12239000	10607000	1632300	0	0	0	0	0	0	37878	1718	35622	232457;232458;232459	312555;312556;312557	312555			3	
NAGNAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP	0	Unmodified	3747.6191	0.61906825	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.579	50.913	3	0.013789	46224	160511_QHF_FH_JSI12i_1	22.344	20.871			1.0337	1.0553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0337	1.0553	NaN	1	0	Median	66249000	30095000	36154000	0	0	0	0	0	0	0	0	0	66249000	30095000	36154000	37879	732	35623	232460	312558	312558			1	
NAGNCLSPAVIVGLLK	1	Unmodified	1624.8971	0.89706184	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	6.12	1	8							3	3	2	5	2	99.04	96.665	2;3	7.6385E-11	46651	160513_QHF_FH_JSI11Kac_6	128.21	114.31			0.92428	0.9901	21.482	12	0	Median	1.4188	1.1948	11.913	3	0	Median	0.82612	1.012	15.213	2	0	Median	0.79736	0.82483	12.427	5	0	Median	1.0666	1.1942	0.78762	2	0	Median	2654400000	1375400000	1279000000	330050000	140670000	189380000	568050000	303130000	264920000	1074300000	604490000	469820000	682020000	327150000	354870000	37880	309	35624	232461;232462;232463;232464;232465;232466;232467;232468;232469;232470;232471;232472	312559;312560;312561;312562;312563;312564;312565;312566;312567;312568;312569;312570;312571;312572;312573;312574;312575;312576	312562			18	
NAGNEQDLGIQYK	1	Unmodified	1448.6896	0.68957148	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	39.552	35.557	2	2.9789E-15	31725	160511_QHF_FH_JSI11i_1	158.94	139.33			0.9269	0.89488	7.7093	5	0	Median	0.99811	0.80616	NaN	1	0	Median	0.73789	0.86174	NaN	1	0	Median	0.92692	0.90751	1.983	2	0	Median	0.91506	0.99233	NaN	1	0	Median	1129500000	584130000	545390000	265590000	118900000	146690000	363410000	177120000	186300000	495800000	285290000	210510000	4711400	2817000	1894400	37881	1421	35625	232473;232474;232475;232476;232477	312577;312578;312579;312580;312581	312578			5	
NAGQAVTIVAQYRPEEYSR	0	Unmodified	2151.0709	0.070880117	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		57.638	57.638	3	0.02385	51150	160511_QHF_FH_JSI11i_3	31.818	22.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37882	2330	35626	232478	312582	312582			1	
NAGVEGSLIVEK	1	Unmodified	1214.6507	0.65066678	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.31	10	4	4			2	2		5	6	9	9	3	45.939	42.67	1;2	5.5012E-06	35575	160511_QHF_FH_JSI10i_3	122.69	101.82			0.73023	0.74549	46.152	25	17	Median	0.95405	0.80631	57.074	6	4	Median	0.6271	0.76804	37.975	9	6	Median	0.73972	0.69531	43.551	7	5	Median	1.0492	1.1015	65.177	3	2	Plateau	24195000000	14066000000	10129000000	3952800000	2108600000	1844200000	9864700000	6051500000	3813200000	5619300000	2993900000	2625500000	4758700000	2912200000	1846500000	37883	980	35627	232479;232480;232481;232482;232483;232484;232485;232486;232487;232488;232489;232490;232491;232492;232493;232494;232495;232496;232497;232498;232499;232500;232501;232502;232503;232504;232505	312583;312584;312585;312586;312587;312588;312589;312590;312591;312592;312593;312594;312595;312596;312597;312598;312599;312600;312601;312602;312603;312604;312605;312606;312607;312608;312609;312610;312611;312612;312613;312614;312615;312616;312617;312618;312619;312620;312621;312622	312591			40	
NAHLNALK	1	Unmodified	879.49265	0.49265	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.99	11.785	3	0.0052401	9133	160511_QHF_FH_JSI11i_2	53.968	35.528			0.3003	0.29738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3003	0.29738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101220000	66038000	35178000	0	0	0	0	0	0	101220000	66038000	35178000	0	0	0	37884	2605	35628	232506	312623	312623			1	
NAHVTDPR	0	Unmodified	908.44643	0.44642809	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	5.9065	5.5005	2	0.001725	3392	160511_QHF_FH_JSI11i_2	85.642	40.669			0.93922	0.79946	20.507	4	0	Linear	1.3792	1.2239	NaN	1	0	Median	0.70352	0.87119	NaN	1	0	Median	0.82547	0.83321	NaN	1	0	Median	1.0686	1.2029	NaN	1	0	Median	303580000	148470000	155110000	46306000	21009000	25297000	78934000	44506000	34428000	109410000	51263000	58144000	68938000	31693000	37245000	37885	1883	35629	232507;232508;232509;232510	312624;312625;312626;312627	312626			4	
NAIANASTLAEVER	0	Unmodified	1457.7474	0.74742071	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	2	3	53.817	51.129	2	1.1843E-29	43832	160511_QHF_FH_JSI12i_2	184.55	161.2			1.1391	1.1067	12.893	11	1	Median	1.394	1.1906	6.5019	3	1	Median	0.89209	1.056	6.1733	3	0	Plateau	1.1809	1.1778	9.0876	2	0	Median	1.0185	1.139	22.005	3	0	Median	2397900000	1217700000	1180200000	459780000	197450000	262330000	617800000	351010000	266790000	804300000	423570000	380730000	516060000	245690000	270360000	37886	937	35630	232511;232512;232513;232514;232515;232516;232517;232518;232519;232520;232521	312628;312629;312630;312631;312632;312633;312634;312635;312636;312637;312638;312639;312640;312641;312642;312643;312644;312645;312646;312647;312648	312631			21	
NAIEHPVR	0	Unmodified	934.49846	0.49846366	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		6							2	1	1	3	3	8.6325	7.2589	2;3	0.0022329	5665	160511_QHF_FH_JSI11i_2	50.607	35.943			0.89762	0.9853	21.174	7	2	Median	1.4449	1.2342	NaN	1	0	Median	0.76056	0.95399	NaN	1	1	Median	0.87351	0.87645	18.139	2	0	Median	0.89762	0.9853	27.256	3	1	Median	912740000	481610000	431130000	66329000	25457000	40873000	97240000	51379000	45862000	420600000	237440000	183160000	328570000	167340000	161230000	37887	4316	35631	232522;232523;232524;232525;232526;232527;232528;232529	312649;312650;312651;312652;312653;312654;312655	312653			7	
NAIFHLLK	1	Unmodified	954.56509	0.56508666	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	2	3	53.194	52.65	3	0.0058831	47452	160511_QHF_FH_JSI11i_3	51.854	42.991			0.84477	0.85933	65.566	6	5	Median	NaN	NaN	NaN	0	0	Median	0.33626	0.394	NaN	1	1	Median	1.0874	1.0222	57.993	2	2	Median	2.3309	2.4242	63.831	3	2	Plateau	156540000	68270000	88272000	0	0	0	14841000	7699900	7140700	53496000	26036000	27460000	88206000	34534000	53671000	37888	1542	35632	232530;232531;232532;232533;232534;232535;232536	312656;312657;312658;312659;312660;312661;312662	312656			7	
NAIHTFVQSGSHLAAR	0	Unmodified	1707.8805	0.88050057	800	P04040	CAT	Catalase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			47.159	38.549	3	0.021072	21234	160513_QHF_FH_JSI10Kac_6	38.093	26.479			1.038	1.1915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.038	1.1915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13336000	6491400	6844600	0	0	0	13336000	6491400	6844600	0	0	0	0	0	0	37889	800	35633	232537	312663	312663			1	
NAIIIQSFIR	0	Unmodified	1173.687	0.68699271	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.139	80.252	2	0.0016223	69386	160511_QHF_FH_JSI12i_2	76.465	41.933			0.65234	0.65763	28.628	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55202	0.53711	NaN	1	1	Median	0.7709	0.80518	NaN	1	1	Median	34457000	20734000	13723000	0	0	0	0	0	0	17668000	11040000	6627800	16790000	9694000	7095500	37890	2661	35634	232538;232539	312664;312665	312664			2	
NAIKHIR	1	Acetyl (K)	892.52428	0.52428448	5764				yes	yes	1	0	0	1		By MS/MS			16	0									1		1			64.233	55.973	2	0.0055547	30918	160513_QHF_FH_JSI10Kac_6	110.61	13.541	+		0.19602	0.22961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19602	0.22961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69033000	64815000	4218300	0	0	0	69033000	64815000	4218300	0	0	0	0	0	0	37891	5764	35635	232540	312666	312666	3552		1	
NAILFETISLIIHYDSEPNLLVR	0	Unmodified	2669.4429	0.44285284	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				100.64	91.463	3	8.1019E-12	52858	160513_QHF_FH_JSI9Kac_6	161.66	134.26			6.4837	5.5475	NaN	1	1	Median	6.4837	5.5475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89054000	12887000	76167000	89054000	12887000	76167000	0	0	0	0	0	0	0	0	0	37892	726	35636	232541	312667	312667			1	
NAIMFGK	1	Unmodified	779.4	0.39999517	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.986	33.649	2	0.053397	28571	160511_QHF_FH_JSI12i_2	42.229	25.302			0.18878	0.20335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18878	0.20335	NaN	1	0	Median	81585000	62038000	19547000	0	0	0	0	0	0	0	0	0	81585000	62038000	19547000	37893	5658	35637	232542	312668;312669	312668			2	
NAIMSYVLTSR	0	Unmodified	1253.6438	0.64380726	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.196	65.824	2	0.017045	36238	160513_QHF_FH_JSI10Kac_6	47.894	33.776			0.54268	0.64236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54268	0.64236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44539000	29480000	15058000	0	0	0	44539000	29480000	15058000	0	0	0	0	0	0	37894	1434	35638	232543	312670	312670			1	
NAININELFIEISR	0	Unmodified	1644.8835	0.88352026	5389	Q9UL26	RAB22A	Ras-related protein Rab-22A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.65	101.53	2	0.0030582	89275	160511_QHF_FH_JSI11i_2	66.538	30.996			0.79538	0.8038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79538	0.8038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133630000	82800000	50834000	0	0	0	0	0	0	133630000	82800000	50834000	0	0	0	37895	5389	35639	232544	312671	312671			1	
NAINTEMYHEIMR	0	Unmodified	1620.7388	0.73884664	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	2	2	3	2	56.638	54.715	2;3	4.4101E-11	48056	160511_QHF_FH_JSI9i_2	161.62	130.75			1.0105	1.0947	11.097	9	0	Median	1.3091	1.1074	1.6353	2	0	Median	0.83306	1.0219	1.8133	2	0	Median	1.1378	1.1735	17.41	3	0	Plateau	1.0286	1.1548	7.5008	2	0	Median	2303900000	1122400000	1181500000	396610000	197290000	199320000	528890000	315150000	213740000	932650000	383620000	549030000	445740000	226320000	219420000	37896	538	35640	232545;232546;232547;232548;232549;232550;232551;232552;232553	312672;312673;312674;312675;312676;312677;312678;312679;312680;312681;312682;312683;312684;312685;312686;312687;312688	312678			17	
NAIQEIQR	0	Unmodified	970.51959	0.51959303	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	21.525	20.35	2	0.0071546	16808	160511_QHF_FH_JSI12i_2	58.815	5.4636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37897	2455	35641	232554	312689	312689			1	
NAIQLLASFLANNPFSCK	1	Unmodified	2007.0248	0.024781548	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5		1	4	1	101.25	94.016	2;3	1.6749E-24	52518	160513_QHF_FH_JSI11Kac_6	152.37	142.84			1.1175	1.1111	99.908	6	5	Median	NaN	NaN	NaN	0	0	Median	0.28081	0.33419	NaN	1	1	Median	2.0979	1.9629	89.555	4	3	Median	0.85224	0.90727	NaN	1	1	Median	561140000	215080000	346060000	0	0	0	98533000	81575000	16957000	362110000	75874000	286230000	100490000	57629000	42866000	37898	2605	35642	232555;232556;232557;232558;232559;232560	312690;312691;312692;312693;312694;312695;312696	312692			7	
NAISLPQLNQAAYDSLVVGK	1	Unmodified	2100.1215	0.1215187	2153	Q00587	CDC42EP1	Cdc42 effector protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	97.456	97.364	2;3	0.0019958	88472	160511_QHF_FH_JSI12i_1	51.546	40.936			0.93978	1.039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93978	1.039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16074000	11957000	4117600	0	0	0	12593000	8475100	4117600	0	0	0	3481600	3481600	0	37899	2153	35643	232561;232562	312697;312698	312697			2	
NAITSSYSSTR	0	Unmodified	1185.5626	0.56258006	35;4105	A8CG34;Q96HA1	POM121C;POM121	Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	19.653	16.644	2	0.00057919	13550	160511_QHF_FH_JSI11i_2	69.979	64.82			1.1343	1.1216	13.276	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0308	1.0145	14.198	2	0	Median	1.1116	1.1792	NaN	1	0	Median	67230000	28745000	38485000	0	0	0	0	0	0	40670000	17631000	23039000	26560000	11114000	15446000	37900	35;4105	35644	232563;232564;232565;232566;232567	312699;312700;312701;312702;312703	312702			5	
NAITVPFK	1	Unmodified	888.5069	0.50690308	4213	Q96QR8	PURB	Transcriptional activator protein Pur-beta	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	50.358	49.511	2	0.06065	42377	160511_QHF_FH_JSI12i_2	34.931	22.575			1.1017	1.1385	25.385	4	0	Median	0.87136	0.76952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3186	1.2931	11.715	2	0	Median	1.007	1.0889	NaN	1	0	Median	134630000	73304000	61330000	32956000	20779000	12177000	0	0	0	61923000	29900000	32024000	39754000	22625000	17129000	37901	4213	35645	232568;232569;232570;232571	312704	312704			1	
NAIVVLIPK	1	Unmodified	965.62735	0.62735256	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.11		4				3	5	4	4	4	6	5	5	71.292	62.87	2	7.9612E-05	57563	160511_QHF_FH_JSI12i_2	95.531	91.677			0.94404	0.91935	55.763	19	5	Median	0.97179	0.79011	11.052	4	1	Median	0.72944	0.87779	47.577	6	2	Median	0.95685	0.93841	96.795	5	2	Median	0.94465	1.0437	10.318	4	0	Median	770270000	409960000	360310000	138190000	63849000	74346000	263340000	154420000	108930000	263010000	137150000	125860000	105710000	54540000	51174000	37902	5523	35646	232572;232573;232574;232575;232576;232577;232578;232579;232580;232581;232582;232583;232584;232585;232586;232587;232588;232589;232590;232591	312705;312706;312707;312708;312709;312710;312711;312712;312713;312714;312715;312716;312717;312718;312719;312720;312721;312722;312723;312724;312725;312726;312727;312728	312706			24	
NAKFYPVTR	1	Acetyl (K)	1136.5978	0.59784335	1836	P54851	EMP2	Epithelial membrane protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.018	41.303	2	0.00047708	22942	160513_QHF_FH_JSI11Kac_5	100.02	55.668			0.26148	0.25774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26148	0.25774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14977000	12298000	2679300	0	0	0	0	0	0	14977000	12298000	2679300	0	0	0	37903	1836	35647	232592	312729;312730	312729	1846		2	
NAKKKNNK	4	3 Acetyl (K)	1069.588	0.58800695	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	3	0	0	3			By MS/MS	By MS/MS	13	0						2						1	1	8.1783	0.96686	2	0.00037531	3164	160513_QHF_FH_JSI12Kac_3	107.9	50.848			1.0175	1.056	4.2818	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0553	1.0245	NaN	1	0	Median	0.98105	1.0884	NaN	1	0	Median	24052000	12317000	11735000	0	0	0	0	0	0	9612800	3934600	5678100	14439000	8382000	6057000	37904	2285;3886	35648	232593;232594	312731;312732	312732	2386;2387;2388;2390;2975;2976;2977;2978		2	
NAKKKNNKK	5	4 Acetyl (K)	1239.6935	0.69353465	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	4	0	0	4		By MS/MS			13	0						1					1			15.34	7.909	2	0.0013587	6140	160513_QHF_FH_JSI10Kac_3	83.948	58.389			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1703700	1703700	0	0	0	0	1703700	1703700	0	0	0	0	0	0	0	37905	2285;3886	35649	232595	312733	312733	2386;2387;2388;2390;2394;2975;2976;2977;2978;2979		1	
NAKPLSFK	2	Acetyl (K)	945.52837	0.5283668	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		49.065	38.55	2	0.016688	22728	160513_QHF_FH_JSI11Kac_4	65.246	42.755			0.37727	0.37301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37727	0.37301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25788000	14644000	11145000	0	0	0	0	0	0	25788000	14644000	11145000	0	0	0	37906	2158	35650	232596	312734	312734	2264		1	
NALADFLPVMK	1	Unmodified	1217.6478	0.64783001	5402	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	93.978	93.446	2	0.0012046	80539	160511_QHF_FH_JSI12i_2	65.347	47.035			1.3487	1.3456	6.1752	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3467	1.2881	NaN	1	0	Median	1.3508	1.4057	NaN	1	0	Median	21682000	10242000	11440000	0	0	0	0	0	0	15035000	7303300	7732000	6646900	2938800	3708100	37907	5402	35651	232597;232598;232599	312735;312736;312737	312735			3	
NALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVR	0	Unmodified	3991.277	0.27704384	778	P00846	MT-ATP6	ATP synthase subunit a	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			107.21	101.49	3;4	9.4514E-33	60173	160513_QHF_FH_JSI10Kac_6	145.16	136.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104790000	80563000	24230000	0	0	0	104790000	80563000	24230000	0	0	0	0	0	0	37908	778	35652	232600;232601	312738;312739	312738			1	
NALALWLSHLEER	0	Unmodified	1550.8205	0.82052608	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.4	80.699	3	0.0049159	45365	160513_QHF_FH_JSI10Kac_6	47.622	36.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25246000	0	25246000	0	0	0	25246000	0	25246000	0	0	0	0	0	0	37909	2913	35653	232602	312740	312740			1	
NALANPLYCPDYR	0	Unmodified	1565.7297	0.72966216	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	59.334	58.529	2	3.5453E-07	53158	160511_QHF_FH_JSI11i_1	136.5	125.75			0.97511	1.0969	30.266	7	4	Median	1.2852	1.0823	55.625	2	2	Median	0.80827	0.96399	18.264	2	2	Median	1.1169	1.1096	20.322	2	0	Median	1.4733	1.5797	NaN	1	0	Median	484750000	222920000	261830000	66965000	28496000	38469000	158260000	84723000	73539000	217130000	91619000	125510000	42390000	18083000	24307000	37910	1216	35654	232603;232604;232605;232606;232607;232608;232609	312741;312742;312743;312744;312745;312746;312747;312748;312749	312741			9	
NALDLLLPK	1	Unmodified	995.60153	0.60153174	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	6.03	4	4						3		1	3	3	4	82.583	79.318	2	7.3882E-05	71634	160511_QHF_FH_JSI11i_2	96.034	78.794			0.90168	1.0153	30.654	11	2	Median	1.0091	0.89017	NaN	1	0	Median	0.82044	1.0153	21.186	3	0	Median	0.84833	0.86473	15.007	3	0	Median	1.0448	1.1503	51.187	4	2	Median	721170000	404690000	316480000	101270000	52019000	49254000	214320000	134620000	79695000	226980000	117990000	108990000	178600000	100050000	78543000	37911	1359	35655	232610;232611;232612;232613;232614;232615;232616;232617;232618;232619;232620	312750;312751;312752;312753;312754;312755;312756;312757;312758;312759;312760;312761;312762;312763;312764;312765;312766;312767;312768;312769;312770;312771	312764			22	
NALEIVMK	1	Unmodified	916.50519	0.50518852	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.445	55.089	2	0.023547	47211	160511_QHF_FH_JSI12i_2	54.157	26.275			0.53939	0.58801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53939	0.58801	NaN	1	1	Median	18676000	11898000	6778500	0	0	0	0	0	0	0	0	0	18676000	11898000	6778500	37912	16	35656	232621	312772	312772			1	
NALESYAFNMK	1	Unmodified	1286.5965	0.59652272	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.58	4	4	4				4	4	5	5	7	7	6	66.032	60.48	2	6.3298E-46	32498	160513_QHF_FH_JSI11Kac_5	206.43	190.29			1.076	1.099	31.785	25	4	Median	1.2415	1.0485	12.331	5	0	Median	0.93379	1.0895	17.813	7	2	Median	1.1645	1.1237	50.946	7	1	Median	0.97385	1.0097	18.554	6	1	Median	24468000000	10847000000	13621000000	5053100000	2036000000	3017100000	6105300000	3043500000	3061800000	8354000000	3315100000	5039000000	4955300000	2451900000	2503400000	37913	954;1416	35657	232622;232623;232624;232625;232626;232627;232628;232629;232630;232631;232632;232633;232634;232635;232636;232637;232638;232639;232640;232641;232642;232643;232644;232645;232646	312773;312774;312775;312776;312777;312778;312779;312780;312781;312782;312783;312784;312785;312786;312787;312788;312789;312790;312791;312792;312793;312794;312795;312796;312797;312798;312799;312800;312801;312802;312803;312804;312805;312806;312807;312808;312809;312810;312811;312812;312813;312814;312815;312816;312817;312818;312819;312820;312821;312822;312823;312824;312825;312826;312827;312828;312829;312830;312831;312832	312817			60	
NALESYAFNMK	1	Oxidation (M)	1302.5914	0.59143734	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.55	5	4	1				3	6		5	3	6	5	52.475	46.926	2;3	4.4654E-07	40174	160511_QHF_FH_JSI12i_2	120.27	113.96			1.1649	1.1332	24.832	19	7	Median	1.2089	0.97979	27.202	5	3	Median	0.70755	0.85609	15.418	3	0	Plateau	1.201	1.1868	18.279	6	2	Median	1.3949	1.433	27.122	5	2	Median	2101200000	963710000	1137500000	416330000	196020000	220310000	265130000	137330000	127800000	856920000	345340000	511580000	562850000	285020000	277830000	37914	954;1416	35657	232647;232648;232649;232650;232651;232652;232653;232654;232655;232656;232657;232658;232659;232660;232661;232662;232663;232664;232665	312833;312834;312835;312836;312837;312838;312839;312840;312841;312842;312843;312844;312845;312846;312847;312848;312849;312850;312851;312852;312853;312854;312855;312856;312857;312858;312859;312860	312835		530	27	
NALFPEVFSPTPDENSDQNSR	0	Unmodified	2363.0666	0.0665826	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	82.67	82.328	2;3	0.00067366	74939	160511_QHF_FH_JSI11i_1	68.513	60.602			0.75952	1.2296	48.43	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.47111	0.53164	NaN	1	0	Median	1.278	1.2296	NaN	1	1	Median	1.2245	1.2304	NaN	1	0	Median	59994000	34472000	25522000	0	0	0	30622000	21543000	9078900	12012000	4424400	7587100	17360000	8504100	8856400	37915	3411	35658	232666;232667;232668	312861;312862;312863	312861			3	
NALGPGLSPELGPLPALR	0	Unmodified	1770.9992	0.99921872	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	93.562	93.142	2	3.5262E-08	81886	160511_QHF_FH_JSI11i_2	158.11	152.39			1.0241	0.99902	7.5763	5	0	Median	1.2173	1.0131	NaN	1	0	Median	0.8076	0.99902	NaN	1	0	Median	0.97841	0.9663	3.2727	2	0	Median	1.0241	1.1556	NaN	1	0	Median	288250000	150600000	137640000	68911000	34462000	34449000	61376000	35462000	25914000	89414000	46631000	42783000	68546000	34049000	34497000	37916	3506	35659	232669;232670;232671;232672;232673	312864;312865;312866;312867;312868;312869;312870;312871	312869			8	
NALIHKSSVNCPFSSQDMK	2	Acetyl (K);Oxidation (M)	2220.0303	0.03033721	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		57.465	47.74	3	0.02957	25849	160513_QHF_FH_JSI11Kac_6	36.166	27.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8057300	8057300	0	0	0	0	0	0	0	8057300	8057300	0	0	0	0	37917	2265	35660	232674	312872	312872	2366	1872	1	
NALIHKSSVNCPFSSQDMK	2	Acetyl (K)	2204.0354	0.035422588	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		63.44	54.209	3	0.00043106	29379	160513_QHF_FH_JSI11Kac_6	89.011	78.246			2.4025	2.3185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4025	2.3185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39979000	22959000	17021000	0	0	0	9396800	0	9396800	30582000	22959000	7623800	0	0	0	37918	2265	35660	232675;232676;232677	312873;312874;312875	312874	2366		3	
NALLSLAK	1	Unmodified	828.5069	0.50690308	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.25	3.61	2	5	4					1		4	4	4		49.649	48.047	1;2	0.0022922	39399	160511_QHF_FH_JSI9i_3	81.191	14.391			0.82775	0.88236	37.172	12	5	Median	1.1045	0.91303	25.392	4	1	Median	0.75576	0.90756	14.141	4	1	Median	0.6865	0.68733	63.936	4	3	Median	NaN	NaN	NaN	0	0	Median	4132800000	2141400000	1991400000	1066000000	525410000	540590000	1375700000	740320000	635360000	1691100000	875700000	815400000	0	0	0	37919	805	35661	232678;232679;232680;232681;232682;232683;232684;232685;232686;232687;232688;232689	312876;312877;312878;312879;312880;312881;312882;312883;312884;312885;312886;312887;312888;312889;312890	312883			15	
NALLSLVGSDP	0	Unmodified	1084.5764	0.57643921	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	85.005	84.546	2	0.00022614	76738	160511_QHF_FH_JSI10i_1	79.906	62.521			1.0005	0.99767	9.6426	4	0	Median	1.459	1.1829	NaN	1	0	Median	0.83798	0.9493	NaN	1	0	Median	1.0392	1.0034	NaN	1	0	Median	0.9632	0.99201	NaN	1	0	Median	97040000	52362000	44678000	20828000	9543100	11285000	23238000	13908000	9329400	28889000	15982000	12907000	24085000	12928000	11157000	37920	2986	35662	232690;232691;232692;232693	312891;312892;312893;312894;312895;312896	312895			6	
NALNIGMVEEVLQSSDETK	1	Unmodified	2076.0045	0.0044996155	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.13	100.94	2	9.8257E-06	86820	160511_QHF_FH_JSI12i_2	97.417	85.441			1.0911	1.2216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0911	1.2216	NaN	1	1	Median	108900000	39334000	69570000	0	0	0	0	0	0	0	0	0	108900000	39334000	69570000	37921	4995	35663	232694	312897	312897			1	
NALPALLIYK	1	Unmodified	1114.675	0.67503104	2396	Q13371	PDCL	Phosducin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		80.505	79.837	2	0.004856	70280	160511_QHF_FH_JSI11i_2	54.712	47.066			0.71033	0.869	40.562	3	1	Plateau	1.9394	1.6389	NaN	1	1	Median	0.70267	0.869	NaN	1	0	Median	0.78399	0.77022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47989000	24209000	23781000	10144000	3524900	6619500	19815000	10966000	8848600	18030000	9717300	8312800	0	0	0	37922	2396	35664	232695;232696;232697	312898;312899;312900;312901	312900			4	
NALPPVLTTVNGQSPPEHSAPAK	1	Unmodified	2324.2125	0.21245898	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	57.688	56.773	3	1.0329E-06	49082	160511_QHF_FH_JSI11i_2	69.133	62.769			1.1741	1.3003	2.7996	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1016	1.3357	NaN	1	0	Median	1.2994	1.3003	NaN	1	0	Median	1.1741	1.263	NaN	1	0	Median	175630000	86229000	89403000	0	0	0	57644000	28238000	29406000	61110000	28126000	32984000	56879000	29865000	27013000	37923	3132	35665	232698;232699;232700	312902;312903;312904;312905;312906	312904			5	
NALQQENHIIDGVK	1	Unmodified	1577.8162	0.81616898	4606	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.57	3	8	2					4		4	5	4	4	43.965	40.778	2;3	1.5977E-14	34692	160511_QHF_FH_JSI11i_2	169.23	159.27			0.9616	0.97911	29.711	17	3	Median	1.3062	1.1122	46.176	4	1	Median	0.90691	1.015	26.687	5	2	Median	0.95316	0.95353	10.187	4	0	Median	0.89449	0.97813	24.998	4	0	Median	4591500000	2652200000	1939300000	693690000	352580000	341120000	1124900000	744660000	380200000	1809200000	1035700000	773520000	963720000	519280000	444440000	37924	4606	35666	232701;232702;232703;232704;232705;232706;232707;232708;232709;232710;232711;232712;232713;232714;232715;232716;232717	312907;312908;312909;312910;312911;312912;312913;312914;312915;312916;312917;312918;312919;312920;312921;312922;312923;312924;312925;312926;312927;312928;312929;312930;312931;312932;312933	312923			27	
NALSSLWGK	1	Unmodified	974.51853	0.5185304	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	59.265	58.439	2	0.0004804	50761	160511_QHF_FH_JSI11i_2	79.906	51.732			0.86596	0.78514	45.1	5	1	Median	0.92143	0.78514	NaN	1	0	Median	0.57287	0.69577	NaN	1	0	Median	0.54043	0.52827	72.438	2	1	Median	0.89632	0.98917	NaN	1	0	Median	1059300000	597760000	461580000	172540000	93871000	78667000	257920000	169470000	88448000	408710000	212590000	196120000	220170000	121820000	98350000	37925	1909	35667	232718;232719;232720;232721;232722	312934;312935;312936;312937;312938;312939	312938			6	
NALTTLAGPLTPPVK	1	Unmodified	1491.8661	0.86607929	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	79.178	78.17	2;3	1.2093E-05	68709	160511_QHF_FH_JSI11i_2	85.845	71.155			0.87335	0.93733	10.202	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.052	1.0208	NaN	1	0	Median	0.83158	0.88369	8.3348	2	0	Median	43722000	20734000	22988000	0	0	0	0	0	0	17567000	6992000	10576000	26154000	13742000	12412000	37926	4699	35668	232723;232724;232725;232726	312940;312941;312942	312941			1	
NALVSHLDGTTPVCEDIGR	0	Unmodified	2052.9899	0.9898526	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	3	2	58.536	57.667	2;3	4.199E-16	49982	160511_QHF_FH_JSI11i_2	173.68	142.45			0.89302	0.90087	35.501	6	6	Median	1.0252	0.86563	NaN	1	1	Median	1.0707	1.2758	43.565	2	2	Median	0.76848	0.78916	36.559	3	3	Median	NaN	NaN	NaN	0	0	Median	460330000	209170000	251150000	72014000	41129000	30885000	162040000	62270000	99769000	206230000	97873000	108360000	20042000	7902300	12139000	37927	1379	35669	232727;232728;232729;232730;232731;232732;232733;232734	312943;312944;312945;312946;312947;312948;312949;312950;312951	312947			9	
NALYIKSSK	2	Acetyl (K)	1064.5866	0.58660996	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			2	1		43.432	33.377	2	0.021592	20080	160513_QHF_FH_JSI11Kac_4	52.725	44.193			0.98447	1.0715	162.46	2	1	Median	NaN	NaN	NaN	0	0	Median	2.8475	3.38	NaN	1	1	Median	0.34036	0.3397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23630000	16726000	6904100	0	0	0	3696100	1842600	1853500	19934000	14883000	5050600	0	0	0	37928	1824	35670	232735;232736;232737	312952;312953;312954	312953	1841		3	
NAMGSLASQATK	1	Unmodified	1177.5761	0.57612163	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.71	3	5	1				1			3	2	3	2	29.09	27.296	2	0.00019257	22851	160511_QHF_FH_JSI11i_2	80.979	59.473			1.2176	1.1466	49.599	9	5	Median	0.95868	0.80433	50.138	2	1	Median	0.97931	1.1662	44.13	2	1	Median	1.2176	1.2347	34.713	3	1	Median	0.88411	1.0021	105.99	2	2	Median	1301200000	654530000	646660000	283200000	140700000	142500000	322520000	172590000	149930000	414670000	191120000	223550000	280800000	150120000	130680000	37929	1842	35671	232738;232739;232740;232741;232742;232743;232744;232745;232746;232747	312955;312956;312957;312958;312959;312960;312961;312962;312963;312964;312965;312966	312965			12	
NAMGSLASQATK	1	Oxidation (M)	1193.571	0.57103625	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	5.67	5.19		2				1				1		1	1	28.506	27.339	2	0.0014805	22923	160511_QHF_FH_JSI12i_2	66.262	61.297			1.0041	0.98099	38.622	2	0	Median	0.85977	0.74655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1726	1.2891	NaN	1	0	Median	60657000	27821000	32836000	14954000	6975100	7979200	0	0	0	0	0	0	45703000	20846000	24857000	37930	1842	35671	232748;232749;232750	312967;312968	312967		1515	2	
NAMNKVFWR	1	Acetyl (K)	1206.5968	0.59679749	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.464	62.045	2	0.043251	33669	160513_QHF_FH_JSI11Kac_6	52.937	35.311			0.48494	0.47291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48494	0.47291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14874000	8265600	6608100	0	0	0	0	0	0	14874000	8265600	6608100	0	0	0	37931	2340	35672	232751	312969	312969			1	
NAMQIVGFMDHEAESVLAVVAAVLK	1	Unmodified	2641.3608	0.36077947	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			105.49	99.772	3;4	1.7055E-108	59141	160513_QHF_FH_JSI10Kac_6	240.41	223.91			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170830000	0	170830000	0	0	0	170830000	0	170830000	0	0	0	0	0	0	37932	376	35673	232752;232753;232754	312970;312971;312972	312972			3	
NAMYTSQQSVENK	1	Unmodified	1498.6722	0.67220686	3974	Q96AY4	TTC28	Tetratricopeptide repeat protein 28	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.727	19.603	2	0.055415	16746	160511_QHF_FH_JSI11i_1	43.502	29.84			2.4947	2.4214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4947	2.4214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16424000	2432900	13992000	0	0	0	0	0	0	16424000	2432900	13992000	0	0	0	37933	3974	35674	232755	312973	312973			1	
NANAEPAVQR	0	Unmodified	1068.5312	0.53122035	1049	P14209	CD99	CD99 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.8	4	4			1	3	2			2	3	5	4	10.846	7.4485	2	3.2554E-11	6702	160511_QHF_FH_JSI9i_1	150.36	123.76			0.89168	0.96771	14.329	14	0	Median	1.3884	1.1437	14.833	2	0	Median	0.8071	0.96102	7.6346	3	0	Median	0.96111	0.94885	20.478	5	0	Median	0.89168	0.95433	6.6311	4	0	Median	4031100000	1891100000	2140000000	769880000	274740000	495140000	1118300000	536380000	581970000	1150300000	547330000	602970000	992620000	532670000	459950000	37934	1049	35675	232756;232757;232758;232759;232760;232761;232762;232763;232764;232765;232766;232767;232768;232769	312974;312975;312976;312977;312978;312979;312980;312981;312982;312983;312984;312985;312986;312987;312988;312989;312990;312991;312992	312986			19	
NANAVMEYEK	1	Unmodified	1167.523	0.52302343	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	28.218	27.54	2	0.0027743	24055	160511_QHF_FH_JSI11i_1	60.518	43.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37935	4294	35676	232770;232771;232772;232773	312993;312994;312995;312996	312993			4	
NANELSVLK	1	Unmodified	986.53966	0.53965977	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	38.919	38.242	2	0.013094	34362	160511_QHF_FH_JSI11i_1	56.729	24.119			0.55655	0.52144	88.631	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.73944	0.86752	NaN	1	1	Median	0.55655	0.52144	NaN	1	1	Median	2.7751	2.9266	NaN	1	1	Median	137150000	81242000	55906000	0	0	0	52229000	33892000	18337000	70910000	43344000	27566000	14009000	4006500	10003000	37936	4751	35677	232774;232775;232776	312997;312998;312999	312997			3	
NANEMFR	0	Unmodified	880.38614	0.38613602	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		18.382	17.87	2	0.020283	15238	160511_QHF_FH_JSI10i_2	60.799	19.297			0.16494	0.18263	26.853	2	2	Median	NaN	NaN	NaN	0	0	Median	0.18169	0.22082	NaN	1	1	Median	0.14974	0.15105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	153990000	118220000	35766000	0	0	0	55081000	49117000	5964800	98906000	69105000	29801000	0	0	0	37937	2517	35678	232777;232778	313000;313001	313001			2	
NANFEALPEDWR	0	Unmodified	1460.6684	0.66844211	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.659	67.085	2	0.00076456	58577	160511_QHF_FH_JSI11i_2	79.82	73.287			0.76875	0.79721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76875	0.79721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35930000	17682000	18248000	0	0	0	0	0	0	35930000	17682000	18248000	0	0	0	37938	3523	35679	232779	313002	313002			1	
NANKPLLDEIVPVYR	1	Unmodified	1739.957	0.95701956	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	74.991	74.419	3	0.00011316	65760	160511_QHF_FH_JSI9i_2	82.529	76.092			0.86043	0.87947	18.714	7	3	Median	0.89854	0.77607	NaN	1	0	Median	0.57144	0.70482	NaN	1	1	Median	0.99003	0.97905	15.169	2	0	Median	0.72223	0.73276	22.062	3	2	Plateau	512530000	295260000	217260000	58697000	36232000	22466000	86817000	56947000	29870000	171000000	87382000	83621000	196010000	114700000	81305000	37939	4700	35680	232780;232781;232782;232783;232784;232785;232786	313003;313004;313005;313006;313007;313008;313009;313010	313005			8	
NANLYFLDVVQQANTIFHLFDK	1	Unmodified	2609.3278	0.32782309	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.99	95.272	3	2.4119E-89	56202	160513_QHF_FH_JSI10Kac_6	222.95	205.45			0.90422	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90422	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129590000	68752000	60840000	0	0	0	129590000	68752000	60840000	0	0	0	0	0	0	37940	141	35681	232787	313011;313012	313012			2	
NAPAIIFIDELDAIAPK	1	Unmodified	1809.9877	0.98765098	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	6.13	5	8	7						7	6	8	5	8	101.2	98.991	2;3	3.0036E-40	90119	160511_QHF_FH_JSI11i_2	201.48	193.87			0.99837	0.98825	25.73	27	6	Median	1.1084	0.94324	27.298	6	2	Median	0.99663	1.1953	35.31	8	1	Median	0.95721	0.94553	13.388	5	0	Median	0.98447	1.0433	18.888	8	3	Median	10139000000	5335400000	4803400000	1709200000	814060000	895160000	2665000000	1534400000	1130600000	3223700000	1780900000	1442800000	2540900000	1206100000	1334800000	37941	1846	35682	232788;232789;232790;232791;232792;232793;232794;232795;232796;232797;232798;232799;232800;232801;232802;232803;232804;232805;232806;232807;232808;232809;232810;232811;232812;232813;232814	313013;313014;313015;313016;313017;313018;313019;313020;313021;313022;313023;313024;313025;313026;313027;313028;313029;313030;313031;313032;313033;313034;313035;313036;313037;313038;313039;313040;313041;313042;313043;313044;313045;313046;313047	313034			34	
NAPAIIFIDELDAIAPKR	1	Unmodified	1966.0888	0.088762013	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	1	3	3	99.455	96.314	3	1.0177E-17	46620	160513_QHF_FH_JSI12Kac_6	122.01	112.09			0.9426	0.95047	32.483	9	1	Median	1.673	1.4298	63.766	2	0	Median	0.63834	0.78441	NaN	1	0	Median	0.9176	0.95047	9.3262	3	0	Median	0.9426	1.0458	20.354	3	1	Median	3047300000	1513800000	1533500000	587700000	283020000	304670000	502340000	261610000	240740000	960930000	474630000	486300000	996340000	494580000	501760000	37942	1846	35683	232815;232816;232817;232818;232819;232820;232821;232822;232823	313048;313049;313050;313051;313052;313053;313054;313055;313056;313057;313058;313059;313060;313061;313062;313063	313063			16	
NAPNDASYDAVR	0	Unmodified	1291.5793	0.57929275	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.595	20.943	2	1.1813E-05	17938	160511_QHF_FH_JSI9i_1	117.02	112.61			0.65053	0.76002	4.2683	3	0	Plateau	0.87229	0.70733	NaN	1	0	Median	0.65053	0.76542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69469	0.71537	NaN	1	0	Median	580230000	272790000	307440000	174450000	110290000	64168000	214510000	92310000	122200000	0	0	0	191270000	70195000	121080000	37943	3860	35684	232824;232825;232826;232827	313064;313065;313066;313067;313068	313068			5	
NAPPFLEDPSQLPPK	1	Unmodified	1648.8461	0.84607213	452	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	71.167	70.402	2;3	0.0055487	62498	160511_QHF_FH_JSI9i_1	53.034	40.457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37944	452	35685	232828;232829	313069;313070	313070			2	
NAPVGIR	0	Unmodified	725.41842	0.41842242	452	O60830	TIMM17B	Mitochondrial import inner membrane translocase subunit Tim17-B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.27	15.355	2	0.025835	12436	160511_QHF_FH_JSI12i_2	57.102	24.173			0.84716	0.93261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84716	0.93261	NaN	1	1	Median	221540000	147710000	73826000	0	0	0	0	0	0	0	0	0	221540000	147710000	73826000	37945	452	35686	232830	313071	313071			1	
NAPVLLALLGIWYINCFGCETHAMLPYDQYLHR	0	Unmodified	3947.9314	0.93136221	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0		By MS/MS			16	0									1		1			101.78	96.058	4	1.3766E-17	56755	160513_QHF_FH_JSI10Kac_6	118.76	114		+	1.1206	1.3182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1206	1.3182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102970000	27533000	75437000	0	0	0	102970000	27533000	75437000	0	0	0	0	0	0	37946	856;75	35687	232831	313072	313072			1	
NAPVTFIVDGAVVK	1	Unmodified	1428.7977	0.79766537	4737	Q9H5V9	CXorf56	UPF0428 protein CXorf56	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.26	77.058	2	0.01499	66530	160511_QHF_FH_JSI12i_2	53.528	46.839			1.1284	1.2202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1284	1.2202	NaN	1	1	Median	12603000	5302800	7300000	0	0	0	0	0	0	0	0	0	12603000	5302800	7300000	37947	4737	35688	232832	313073	313073			1	
NAPWTLTPEFLAEHR	0	Unmodified	1780.8897	0.88966827	1663	P49585	PCYT1A	Choline-phosphate cytidylyltransferase A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		82.838	82.225	3	0.0002469	72332	160511_QHF_FH_JSI11i_2	45.452	38.561			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37948	1663	35689	232833	313074	313074			1	
NAQAIEDMVGYAQETQHEK	1	Unmodified	2160.9746	0.97459647	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.276		11	1							3	3	3	3	69.003	68.204	2;3	1.9032E-32	59650	160511_QHF_FH_JSI9i_2	148.91	136.03			0.043696	0.053277	279.31	5	5	Median	4.2395	3.6214	NaN	1	1	Median	0.54072	0.66161	356.27	2	2	Median	0.021463	0.021881	NaN	1	1	Median	0.033672	0.037915	NaN	1	1	Median	1048900000	782550000	266380000	87888000	12945000	74943000	436800000	276010000	160780000	332780000	307170000	25616000	191460000	186420000	5044200	37949	4272	35690	232834;232835;232836;232837;232838;232839;232840;232841;232842;232843;232844;232845	313075;313076;313077;313078;313079;313080;313081;313082;313083;313084;313085;313086;313087;313088	313079			14	
NAQAPLALTESHLATLASSSQSPEAIK	1	Unmodified	2734.4137	0.41373756	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	81.231	80.448	3	2.2373E-14	71569	160511_QHF_FH_JSI10i_2	105.03	98.303			0.9175	0.92803	23.095	4	2	Median	1.0704	0.91683	NaN	1	1	Median	0.88332	1.042	NaN	1	1	Median	0.953	0.93936	NaN	1	0	Median	0.56762	0.61605	NaN	1	0	Median	99750000	61129000	38621000	10793000	7810700	2982600	16939000	13703000	3236200	47164000	24189000	22975000	24853000	15426000	9427100	37950	4936	35691	232846;232847;232848;232849;232850	313089;313090;313091;313092;313093;313094;313095;313096	313096			8	
NAQAQQEFK	1	Unmodified	1062.5094	0.50942227	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	2	2	12.066	9.4158	2	1.9432E-22	7843	160511_QHF_FH_JSI9i_1	168.27	130.71			0.90687	1.0217	68.442	6	3	Median	0.63626	0.51777	NaN	1	1	Median	0.8532	1.0121	NaN	1	0	Median	0.67594	0.66103	93.681	2	1	Median	1.4497	1.563	58.797	2	1	Median	1480000000	758460000	721540000	286700000	142900000	143790000	475160000	276140000	199020000	348770000	162730000	186040000	369370000	176690000	192680000	37951	4294	35692	232851;232852;232853;232854;232855;232856;232857	313097;313098;313099;313100;313101;313102;313103	313102			7	
NAQEALQAIETK	1	Unmodified	1314.6779	0.67794416	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	51.067	49.843	2	0.00021164	42556	160511_QHF_FH_JSI12i_2	95.417	79.788			0.28778	0.28618	162.39	2	2	Median	0.10066	0.09077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82274	0.90224	NaN	1	1	Median	109960000	68638000	41320000	46955000	43329000	3626100	0	0	0	0	0	0	63002000	25308000	37694000	37952	344	35693	232858;232859	313104;313105;313106	313104			3	
NAQELLGPRPGLR	0	Unmodified	1419.7946	0.79464568	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			43.131	41.572	3	0.00041807	33982	160511_QHF_FH_JSI9i_3	62.14	47.109			2.0414	1.5557	133	3	3	Plateau	0.93822	0.76014	148.02	2	2	Median	0.15781	0.18349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204150000	107720000	96431000	161190000	70585000	90606000	42956000	37130000	5825100	0	0	0	0	0	0	37953	950	35694	232860;232861;232862	313107;313108;313109	313109			3	
NAQFIIISLR	0	Unmodified	1173.687	0.68699271	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		4							5	2	2	3	2	82.481	77.866	2	1.2525E-07	41784	160513_QHF_FH_JSI10Kac_6	117.53	72.19			1.508	1.3065	86.372	9	9	Median	2.8557	2.4569	89.312	2	2	Median	0.39534	0.47363	116.55	2	2	Median	0.85204	0.83367	46.155	3	3	Median	1.7635	1.9164	18.284	2	2	Median	827680000	533630000	294050000	64513000	12692000	51821000	620220000	448610000	171610000	105560000	58575000	46987000	37385000	13749000	23636000	37954	4989	35695	232863;232864;232865;232866;232867;232868;232869;232870;232871	313110;313111;313112;313113;313114;313115;313116;313117;313118	313117			9	
NAQLAQYNFILVVGEK	1	Unmodified	1805.9676	0.96758424	1282;13	P26639;A2RTX5	TARS;TARSL2	Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.98		7							6	3	4	3	3	90.542	86.377	2;3	6.1068E-121	43526	160513_QHF_FH_JSI11Kac_6	270.27	253.73			0.98759	0.88122	54.668	12	8	Median	1.1432	0.97517	41.135	3	2	Median	0.78005	0.92149	66.327	4	4	Median	1.0834	1.0542	71.255	2	0	Median	1.2413	1.329	65.868	3	2	Plateau	995280000	488970000	506310000	255950000	96658000	159300000	472230000	267440000	204790000	154180000	66050000	88126000	112920000	58822000	54093000	37955	1282;13	35696	232872;232873;232874;232875;232876;232877;232878;232879;232880;232881;232882;232883;232884	313119;313120;313121;313122;313123;313124;313125;313126;313127;313128;313129;313130;313131;313132;313133;313134;313135;313136;313137	313122			19	
NAQLDCSK	1	Unmodified	934.41783	0.41783007	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		8.7057	1.3885	2	0.056704	3500	160513_QHF_FH_JSI11Kac_3	42.599	27.823			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37956	5160	35697	232885	313138	313138			1	
NAQLELK	1	Unmodified	814.45487	0.45486751	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.337	21.834	2	0.02574	19165	160511_QHF_FH_JSI12i_1	47.743	6.4407			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37957	4294	35698	232886	313139	313139			1	
NAQLNIELEAAHH	0	Unmodified	1458.7215	0.72154031	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	44.167	43.399	2	2.2153E-09	38266	160511_QHF_FH_JSI10i_2	107.15	78.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17925000	0	17925000	6134400	0	6134400	0	0	0	11790000	0	11790000	0	0	0	37958	1566	35699	232887;232888;232889;232890;232891	313140;313141;313142;313143;313144	313144			5	
NAQMAQSPILLLGGAASTLLQNR	0	Unmodified	2366.274	0.27401338	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			102.21	102.14	3	5.4283E-09	90018	160511_QHF_FH_JSI9i_2	103.24	54.053			1.5313	1.5691	15.095	2	2	Median	1.692	1.4103	NaN	1	1	Median	1.3859	1.7459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164830000	62873000	101960000	69071000	18112000	50959000	95761000	44761000	51000000	0	0	0	0	0	0	37959	10	35700	232892;232893	313145;313146	313145			2	
NAQSNALQER	0	Unmodified	1129.5476	0.54759869	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	9.6055	9.361	2	1.7081E-07	7075	160511_QHF_FH_JSI11i_1	118.67	90.495			1.0088	1.0363	3.3763	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83696	0.9983	NaN	1	0	Median	1.0953	1.0679	NaN	1	0	Median	1.0088	1.0363	NaN	1	0	Median	356370000	167370000	189000000	0	0	0	131810000	59942000	71872000	123390000	58272000	65123000	101160000	49161000	52001000	37960	1005	35701	232894;232895;232896	313147;313148;313149;313150;313151;313152	313148			6	
NASCYFDIEWR	0	Unmodified	1459.619	0.61904908	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.066	82.393	2;3	0.00018422	64832	160511_QHF_FH_JSI12i_2	81.865	66.599			1.086	1.0786	23.629	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88691	1.0786	NaN	1	0	Median	1.086	1.0685	NaN	1	0	Median	1.4082	1.6163	NaN	1	0	Median	180400000	87294000	93110000	5938400	5938400	0	37482000	19553000	17929000	82447000	41908000	40539000	54536000	19895000	34642000	37961	2751	35702	232897;232898;232899;232900	313153;313154;313155;313156;313157;313158	313153			5	
NASDMPETITSR	0	Unmodified	1320.598	0.59797928	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	34.907	30.764	2	3.5724E-06	26977	160511_QHF_FH_JSI9i_1	124.42	107.75			1.0997	1.041	15.565	7	1	Plateau	1.0997	0.91042	NaN	1	0	Median	1.0611	1.2543	27.117	2	1	Median	1.1583	1.118	2.7133	2	0	Median	1.0679	1.1322	4.991	2	0	Median	2062500000	1014800000	1047700000	524780000	221520000	303270000	574100000	325450000	248650000	469400000	221230000	248180000	494190000	246580000	247610000	37962	3712	35703	232901;232902;232903;232904;232905;232906;232907	313159;313160;313161;313162;313163;313164;313165;313166;313167;313168;313169;313170;313171	313168			13	
NASDMPETITSR	0	Oxidation (M)	1336.5929	0.59289391	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	30.959	30.724	2	0.00038449	27607	160511_QHF_FH_JSI12i_1	81.92	74.274			2.9077	2.84	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9077	2.84	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54562000	15000000	39562000	0	0	0	0	0	0	54562000	15000000	39562000	0	0	0	37963	3712	35703	232908;232909	313172;313173	313173		2282	2	
NASEDEIK	1	Unmodified	904.41379	0.41379055	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.8026	8.4425	2	0.019551	6350	160511_QHF_FH_JSI12i_1	57.047	16.779			0.35726	0.37194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35726	0.37194	NaN	1	1	Median	59010000	34792000	24218000	0	0	0	0	0	0	0	0	0	59010000	34792000	24218000	37964	4294	35704	232910	313174	313174			1	
NASEDEIKK	2	Unmodified	1032.5088	0.50875357	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.2	0.4	4	1									2		3	7.6396	7.2835	2	0.0021175	5244	160511_QHF_FH_JSI12i_1	79.906	39.905			1.3077	1.4748	147.39	5	4	Median	NaN	NaN	NaN	0	0	Median	0.96967	1.1246	221.55	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3077	1.4748	136.72	3	3	Median	328390000	162760000	165640000	0	0	0	170800000	81841000	88954000	0	0	0	157600000	80916000	76681000	37965	4294	35705	232911;232912;232913;232914;232915	313175;313176;313177;313178;313179	313177			5	
NASELFPAVVK	1	Unmodified	1173.6394	0.63937381	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	2	3	65.036	64.217	2	5.9825E-06	55825	160511_QHF_FH_JSI11i_2	114.51	102.92			0.73925	0.80662	62.077	10	8	Median	1.1023	0.94118	113.42	2	1	Median	0.65033	0.7572	63.14	3	2	Median	0.93352	0.94426	93.186	2	2	Median	0.84034	0.85926	48.222	3	3	Median	589920000	336780000	253140000	111300000	56648000	54650000	154650000	104440000	50209000	160970000	82498000	78475000	163010000	93197000	69810000	37966	107	35706	232916;232917;232918;232919;232920;232921;232922;232923;232924;232925	313180;313181;313182;313183;313184;313185;313186;313187;313188;313189	313186			10	
NASEMIDK	1	Unmodified	906.41168	0.41168206	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	16.132	15.705	2	0.0078478	12992	160511_QHF_FH_JSI10i_1	68.224	57.809			0.36568	0.39748	237.26	6	6	Median	0.071547	0.057902	NaN	1	1	Median	2.3698	2.8248	301.55	2	2	Median	0.47688	0.4717	NaN	1	1	Median	1.1944	1.2395	288.46	2	2	Median	2847100000	1590300000	1256800000	402860000	338190000	64674000	1013600000	468200000	545380000	424830000	252500000	172330000	1005800000	531430000	474400000	37967	1454	35707	232926;232927;232928;232929;232930;232931	313190;313191;313192;313193;313194;313195	313193			6	
NASEMIDK	1	Oxidation (M)	922.4066	0.40659669	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		15.843	15.72	2	0.039096	13183	160511_QHF_FH_JSI11i_1	65.156	40.233			0.17361	0.17174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17361	0.17174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112570000	89738000	22832000	0	0	0	0	0	0	112570000	89738000	22832000	0	0	0	37968	1454	35707	232932	313196	313196			1	
NASIQHLQEMDSGQEPTVGSQIQR	0	Unmodified	2652.2562	0.25619106	2397	Q13395	TARBP1	Probable methyltransferase TARBP1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				52.537	51.492	3	6.2662E-05	45172	160511_QHF_FH_JSI9i_2	41.423	35.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37969	2397	35708	232933	313197	313197			1	
NASLASSNNDLQVAEEQYQR	0	Unmodified	2236.0356	0.035616823	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			53.659	52.868	2	5.7055E-17	47653	160511_QHF_FH_JSI10i_1	160.78	149.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37970	2269	35709	232934;232935	313198;313199	313198			2	
NASMNTQHGTATEVAVETTTPK	1	Unmodified	2287.075	0.075038797	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								1	3	3	2	33.916	33.025	3	1.4855E-07	28879	160511_QHF_FH_JSI10i_2	101.29	93.447			0.78001	0.81166	41.491	7	6	Median	2.2083	1.8653	NaN	1	1	Median	0.86558	1.0493	36.314	2	2	Median	0.72031	0.71279	8.9136	2	1	Median	1.0278	1.1176	50.58	2	2	Median	368730000	197690000	171050000	52937000	16300000	36637000	82142000	47128000	35014000	114680000	65379000	49304000	118970000	68882000	50091000	37971	5330	35710	232936;232937;232938;232939;232940;232941;232942;232943;232944	313200;313201;313202;313203;313204;313205;313206;313207;313208;313209	313207			9	
NASNDIVR	0	Unmodified	887.44609	0.44609374	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	10.41	9.941	2	0.025539	7808	160511_QHF_FH_JSI12i_1	52.716	23.357			1.1315	1.2501	3.4437	3	3	Median	1.553	1.272	NaN	1	1	Median	1.0738	1.2501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1315	1.1903	NaN	1	1	Median	1008000000	541770000	466220000	312270000	155010000	157260000	376060000	206090000	169980000	0	0	0	319650000	180670000	138980000	37972	4272	35711	232945;232946;232947	313210;313211;313212	313210			3	
NASNPLAHYDTTADEILQQCDGK	1	Unmodified	2560.15	0.14999465	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0			By MS/MS		2	0		1										1		71.119	70.509	3	2.094E-07	61754	160511_QHF_FH_JSI11i_2	85.35	54.934			0.82831	0.83395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82831	0.83395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24958000	15300000	9657500	0	0	0	0	0	0	24958000	15300000	9657500	0	0	0	37973	957	35712	232948	313213	313213			1	
NASQGKPR	1	Acetyl (K)	898.46208	0.46207815	2483	Q13952	NFYC	Nuclear transcription factor Y subunit gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.745					1	2	3				3	2	1	6.4254	-1.3971	2	0.0073745	2212	160513_QHF_FH_JSI10Kac_3	79.809	30.484			0.96425	0.96532	9.4839	6	0	Median	NaN	NaN	NaN	0	0	Median	0.77024	0.91944	12.912	3	0	Median	0.97335	0.96532	3.5956	2	0	Median	0.99611	1.0788	NaN	1	0	Median	104190000	56145000	48049000	0	0	0	47539000	27427000	20112000	35932000	18067000	17864000	20723000	10651000	10073000	37974	2483	35713	232949;232950;232951;232952;232953;232954	313214;313215;313216;313217;313218;313219;313220;313221	313220	2497		8	
NASSEEIQR	0	Unmodified	1032.4836	0.48360145	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	8.0219	7.7832	2	0.00046381	5688	160511_QHF_FH_JSI12i_1	80.219	66.952			0.81287	0.80796	18.37	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73106	0.70954	NaN	1	0	Median	0.90384	0.92003	NaN	1	0	Median	164540000	91577000	72958000	0	0	0	0	0	0	81612000	47677000	33934000	82923000	43900000	39024000	37975	5257	35714	232955;232956	313222	313222			1	
NASTFEDVTQVSSAYQK	1	Unmodified	1873.8694	0.86938634	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	58.452	57.854	2	7.2064E-48	52349	160511_QHF_FH_JSI10i_1	253.16	240.39			2.7764	2.2938	63.968	5	5	Median	2.7764	2.2938	NaN	1	1	Median	1.3572	1.6073	114.14	2	2	Median	3.121	3.0901	NaN	1	1	Median	1.626	1.6793	NaN	1	1	Median	599330000	215400000	383930000	153760000	39931000	113830000	223280000	99840000	123440000	111350000	38289000	73057000	110940000	37338000	73604000	37976	2522	35715	232957;232958;232959;232960;232961	313223;313224;313225;313226;313227	313226			5	
NASTVVVSDK	1	Unmodified	1018.5295	0.52948901	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		21.642	14.149	2	0.033043	9378	160513_QHF_FH_JSI11Kac_3	52.278	45.454			2.7659	2.7062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7659	2.7062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3727000	1185900	2541100	0	0	0	0	0	0	3727000	1185900	2541100	0	0	0	37977	4206	35716	232962	313228	313228			1	
NASYYGNR	0	Unmodified	943.41479	0.41479361	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		6						2		2	2	2	2	9.9445	5.9301	2	0.0019525	6236	160511_QHF_FH_JSI11i_2	83.753	73.285			0.91232	1.0029	38.906	5	1	Median	NaN	NaN	NaN	0	0	Median	0.34348	0.41859	NaN	1	1	Median	1.0411	1.0148	0.57261	2	0	Median	0.88182	0.98052	3.1947	2	0	Median	368910000	197110000	171790000	0	0	0	84325000	54499000	29826000	152870000	77104000	75762000	131720000	65512000	66205000	37978	4294	35717	232963;232964;232965;232966;232967;232968;232969;232970	313229;313230;313231;313232;313233;313234;313235;313236	313232			8	
NATDAVGIVLK	1	Unmodified	1099.6237	0.62372375	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	5.4	8						1	1		2	2	3	3	58.936	56.236	2	0.00077469	50050	160511_QHF_FH_JSI9i_1	80.706	53.402			1.1287	1.1861	107.01	10	8	Median	1.1581	0.94054	118.89	2	2	Median	0.78401	0.92287	151.35	2	2	Median	0.8723	0.87815	114.85	3	2	Median	1.4604	1.6021	137.17	3	2	Median	570090000	311440000	258650000	129900000	61160000	68736000	162880000	99205000	63677000	160490000	90072000	70414000	116830000	61001000	55825000	37979	1733	35718	232971;232972;232973;232974;232975;232976;232977;232978;232979;232980	313237;313238;313239;313240;313241;313242;313243;313244;313245	313245			9	
NATDLQNSSMSEEELTK	1	Unmodified	1895.8419	0.84185096	1502	P40855	PEX19	Peroxisomal biogenesis factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.244	43.498	2	2.769E-12	39465	160511_QHF_FH_JSI12i_1	179.41	163.66			0.75681	0.60715	20.585	3	3	Median	0.75681	0.60715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62398	0.58124	NaN	1	1	Median	0.82299	0.84684	NaN	1	1	Median	145400000	79025000	66375000	40996000	24577000	16419000	0	0	0	50115000	27042000	23073000	54289000	27406000	26883000	37980	1502	35719	232981;232982;232983;232984	313246;313247;313248;313249;313250	313247			5	
NATDLQNSSMSEEELTK	1	Oxidation (M)	1911.8368	0.83676559	1502	P40855	PEX19	Peroxisomal biogenesis factor 19	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				44.599	43.377	2	0.01268	38548	160511_QHF_FH_JSI9i_1	51.875	38.212			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37981	1502	35719	232985	313251	313251		1179	1	
NATILELR	0	Unmodified	928.53418	0.53418046	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	48.795	47.797	2	0.0020169	42102	160511_QHF_FH_JSI10i_2	93.162	57.282			0.36148	0.31436	83.747	5	5	Median	0.90948	0.78486	129.39	2	2	Median	0.22327	0.27992	NaN	1	1	Median	0.27202	0.2662	NaN	1	1	Median	0.36248	0.40452	NaN	1	1	Median	582270000	353300000	228970000	201950000	101680000	100270000	106870000	73199000	33670000	152460000	111530000	40923000	120990000	66882000	54109000	37982	1085	35720	232986;232987;232988;232989;232990	313252;313253;313254;313255;313256	313256			5	
NATMPVTMLIR	0	Unmodified	1245.6573	0.65734884	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	73.754	72.934	2	4.8549E-05	63827	160511_QHF_FH_JSI11i_2	103.26	89.486			0.98992	0.96024	9.4841	5	4	Median	1.1316	0.96024	NaN	1	1	Median	0.73628	0.91252	NaN	1	0	Median	0.96118	0.97608	12.781	2	2	Median	0.98992	1.1039	NaN	1	1	Median	546550000	283140000	263410000	60847000	26186000	34661000	99312000	54444000	44867000	279140000	149940000	129200000	107250000	52573000	54680000	37983	5382	35721	232991;232992;232993;232994;232995	313257;313258;313259;313260;313261	313259			5	
NATNVEQAFMTMAAEIK	1	Unmodified	1867.8808	0.88081943	4642	Q9H0U4;Q92928	RAB1B;RAB1C	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	101.59	101.48	2;3	6.9329E-117	90043	160511_QHF_FH_JSI10i_2	277.31	258.98			0.84028	0.84346	25.581	8	1	Median	1.1827	1.0173	27.506	2	0	Median	0.74013	0.89988	21.189	2	0	Median	1.1164	1.1348	41.575	2	1	Median	0.71379	0.78212	10.295	2	0	Median	2348500000	1295400000	1053200000	483680000	224700000	258990000	505840000	304020000	201810000	763900000	414120000	349790000	595120000	352520000	242600000	37984	4642	35722	232996;232997;232998;232999;233000;233001;233002;233003	313262;313263;313264;313265;313266;313267;313268;313269	313268			8	
NATNVEQAFMTMAAEIKK	2	Unmodified	1995.9758	0.97578244	4642	Q9H0U4;Q92928	RAB1B;RAB1C	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	yes	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	100.23	100.07	3	1.2103E-11	87709	160511_QHF_FH_JSI11i_2	159.7	144.78			0.27709	0.28657	49.315	4	4	Median	0.21068	0.17946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36442	0.37081	NaN	1	1	Median	0.30932	0.34334	62.008	2	2	Median	642860000	469790000	173070000	196350000	153120000	43231000	0	0	0	220480000	152730000	67750000	226030000	163940000	62091000	37985	4642	35723	233004;233005;233006;233007	313270;313271;313272;313273	313273			4	
NATNVEQSFMTMAAEIK	1	Unmodified	1883.8757	0.87573405	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	4	10								3	5	3	3	97.497	97.325	2;3	1.289E-73	85325	160511_QHF_FH_JSI9i_2	205.61	18.038			1.0259	0.98401	52.211	13	9	Median	1.6426	1.4117	38.05	2	1	Median	0.64868	0.73053	66.725	5	5	Median	0.51489	0.53063	32.787	3	2	Plateau	1.1944	1.3227	46.19	3	1	Median	1265200000	657200000	607980000	225550000	92433000	133120000	379610000	211200000	168400000	316040000	183300000	132740000	343980000	170260000	173720000	37986	2020	35724	233008;233009;233010;233011;233012;233013;233014;233015;233016;233017;233018;233019;233020;233021	313274;313275;313276;313277;313278;313279;313280;313281;313282;313283;313284;313285;313286;313287;313288;313289;313290;313291;313292;313293;313294;313295	313289			22	
NATNVEQSFMTMAAEIKK	2	Unmodified	2011.9707	0.97069707	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	1	3	3	88.062	87.473	3	3.0113E-09	76027	160511_QHF_FH_JSI12i_3	130.56	27.453			0.43975	0.45002	108.4	7	7	Median	0.53522	0.45658	NaN	1	1	Median	0.21908	0.27312	NaN	1	1	Median	1.3979	1.429	163.4	2	2	Median	0.39829	0.44194	106.86	3	3	Median	1046200000	598310000	447870000	149370000	84102000	65273000	173570000	148940000	24631000	277550000	131020000	146540000	445690000	234250000	211440000	37987	2020	35725	233022;233023;233024;233025;233026;233027;233028;233029	313296;313297;313298;313299;313300;313301;313302;313303	313303			8	
NATPTKSIK	2	Acetyl (K)	1000.5553	0.55530983	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	24.496	17.097	2	0.0028055	10464	160513_QHF_FH_JSI12Kac_3	82.287	21.377			0.92306	1.0579	17.984	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73981	0.87809	NaN	1	0	Median	0.73537	0.74152	NaN	1	0	Median	0.96469	1.0623	NaN	1	0	Median	27955000	15937000	12018000	0	0	0	8767200	4902500	3864700	5614600	3042300	2572300	13573000	7992100	5580800	37988	4848	35726	233030;233031;233032	313304;313305;313306	313305	3250		3	
NATVHPGLELPLMMAK	1	Unmodified	1720.9004	0.90043266	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	79.827	78.99	3	0.012311	68316	160511_QHF_FH_JSI12i_2	36.451	30.369			0.9756	0.99921	13.255	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90979	1.1166	NaN	1	0	Median	0.9756	0.99921	NaN	1	0	Median	0.79915	0.85753	NaN	1	0	Median	180860000	97649000	83215000	0	0	0	45585000	21935000	23651000	95003000	54732000	40271000	40276000	20982000	19293000	37989	2543	35727	233033;233034;233035	313307;313308	313307			2	
NAVDEFLLLLDK	1	Unmodified	1388.7551	0.75513185	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.25	102.07	2	0.0012702	88038	160511_QHF_FH_JSI12i_2	66.267	52.148			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37990	5270	35728	233036	313309	313309			1	
NAVEEYVYDFR	0	Unmodified	1403.6357	0.635745	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.958	68.063	2	1.4134E-09	59560	160511_QHF_FH_JSI11i_2	134.57	123.74			1.0625	1.1725	9.1806	4	0	Median	1.3634	1.2098	NaN	1	0	Median	0.98544	1.2194	NaN	1	0	Median	1.1456	1.1363	NaN	1	0	Median	0.90534	0.99982	NaN	1	0	Median	297400000	138410000	158990000	48395000	19267000	29128000	70125000	30607000	39518000	101920000	47054000	54864000	76960000	41480000	35480000	37991	723	35729	233037;233038;233039;233040	313310;313311;313312;313313;313314;313315;313316;313317	313315			8	
NAVEEYVYEFR	0	Unmodified	1417.6514	0.65139506	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.39	2	4	1					1		2	3	2	1	71.063	68.972	2	3.1156E-13	60694	160511_QHF_FH_JSI11i_2	150.1	144.9			0.99122	1.0846	16.427	7	1	Median	1.4253	1.2149	NaN	1	0	Median	0.87555	1.0846	23.966	3	1	Median	1.1177	1.1158	9.1044	2	0	Median	0.95131	1.0682	NaN	1	0	Median	1294600000	619810000	674760000	206130000	86724000	119400000	347870000	162770000	185100000	484360000	213490000	270870000	256220000	156830000	99386000	37992	3852	35730	233041;233042;233043;233044;233045;233046;233047;233048	313318;313319;313320;313321;313322;313323;313324;313325;313326;313327;313328;313329;313330	313326			13	
NAVEEYVYEMR	0	Unmodified	1401.6235	0.62346575	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.62	2	4	3					3		2	4	4	2	63.769	60.474	2	4.3151E-07	53519	160511_QHF_FH_JSI10i_2	117.02	108.56			1.09	1.1847	24.22	12	2	Median	1.4852	1.231	41.266	2	0	Median	1.0188	1.2304	13.794	4	1	Median	1.344	1.255	33.104	4	0	Median	0.94306	1.0415	12.117	2	1	Median	3140200000	1483000000	1657300000	460590000	226610000	233980000	1000000000	532670000	467370000	1014400000	411300000	603110000	665190000	312390000	352790000	37993	1417	35731	233049;233050;233051;233052;233053;233054;233055;233056;233057;233058;233059;233060	313331;313332;313333;313334;313335;313336;313337;313338;313339;313340;313341;313342;313343;313344;313345;313346	313345			16	
NAVEEYVYEMR	0	Oxidation (M)	1417.6184	0.61838038	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.34		5					1	3		2	2	3	2	49.494	43.697	2	8.3367E-05	37393	160511_QHF_FH_JSI12i_2	94.616	72.53			1.0159	1.1386	17.948	8	3	Median	1.6995	1.4199	16.983	2	2	Median	0.88487	1.0509	12.344	2	1	Median	1.0105	0.99097	3.1888	2	0	Median	1.1187	1.247	13.868	2	0	Median	189330000	88685000	100640000	31591000	13413000	18178000	48343000	27753000	20590000	58127000	26348000	31779000	51268000	21171000	30097000	37994	1417	35731	233061;233062;233063;233064;233065;233066;233067;233068;233069	313347;313348;313349;313350;313351;313352;313353;313354;313355;313356;313357;313358;313359	313348		1076	13	
NAVIPQYQALFSMDK	1	Unmodified	1723.8603	0.86034198	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	89.832	89.389	2	0.0010592	81487	160511_QHF_FH_JSI12i_1	62.694	47.104			0.72377	0.8087	39.371	5	5	Median	0.99832	0.86871	NaN	1	1	Median	0.47367	0.56749	63.989	2	2	Median	0.5391	0.52947	NaN	1	1	Median	0.72836	0.8087	NaN	1	1	Median	183150000	117160000	65982000	31822000	16085000	15737000	78170000	55631000	22539000	45082000	30158000	14924000	28071000	15289000	12782000	37995	598	35732	233070;233071;233072;233073;233074;233075	313360;313361;313362;313363;313364;313365	313362			6	
NAVITVPAYFNDSQR	0	Unmodified	1693.8424	0.84238373	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.52	8	6	7				3	4		6	6	7	9	72.35	69.288	2;3	2.8309E-40	63469	160511_QHF_FH_JSI10i_1	229.54	218.33			1.1028	1.1164	16.548	25	9	Median	1.3897	1.1907	13.09	5	2	Median	0.90981	1.093	23.493	6	2	Median	1.1261	1.1097	4.4861	6	0	Median	1.061	1.167	15.231	8	5	Median	9690700000	4786400000	4904300000	1639300000	690100000	949210000	2167100000	1132600000	1034500000	3294200000	1688100000	1606100000	2590100000	1275600000	1314500000	37996	1480	35733	233076;233077;233078;233079;233080;233081;233082;233083;233084;233085;233086;233087;233088;233089;233090;233091;233092;233093;233094;233095;233096;233097;233098;233099;233100;233101;233102;233103	313366;313367;313368;313369;313370;313371;313372;313373;313374;313375;313376;313377;313378;313379;313380;313381;313382;313383;313384;313385;313386;313387;313388;313389;313390;313391;313392;313393;313394;313395;313396;313397;313398;313399;313400;313401;313402;313403;313404;313405;313406;313407;313408;313409;313410;313411	313386			46	
NAVITVPAYFNDSQRQATK	1	Unmodified	2122.0807	0.080716522	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	61.869	60.977	3	0.0018526	53935	160511_QHF_FH_JSI10i_2	49.768	43.646			0.33784	0.39535	32.011	2	2	Median	NaN	NaN	NaN	0	0	Median	0.25684	0.31527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44438	0.49578	NaN	1	1	Median	79892000	69070000	10823000	0	0	0	33469000	31461000	2008000	17584000	17584000	0	28839000	20024000	8814900	37997	1480	35734	233104;233105;233106	313412;313413;313414;313415;313416	313416			5	
NAVIVALSSK	1	Unmodified	1000.5917	0.59169534	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.35	1	8	5			1	4	7	6	5	9	11	7	54.724	48.715	2	1.567E-07	26481	160513_QHF_FH_JSI11Kac_6	116.52	81.024			2.5833	2.4922	134.87	30	29	Median	4.0066	3.3787	125.94	5	4	Median	2.0012	2.2416	132.16	9	9	Median	1.0661	1.0481	133.05	10	10	Median	3.8148	3.9503	164.64	6	6	Median	2123200000	1013000000	1110200000	340000000	119200000	220800000	735810000	397590000	338220000	665380000	325280000	340100000	381980000	170920000	211060000	37998	1936	35735	233107;233108;233109;233110;233111;233112;233113;233114;233115;233116;233117;233118;233119;233120;233121;233122;233123;233124;233125;233126;233127;233128;233129;233130;233131;233132;233133;233134;233135;233136;233137;233138	313417;313418;313419;313420;313421;313422;313423;313424;313425;313426;313427;313428;313429;313430;313431;313432;313433;313434;313435;313436;313437;313438;313439;313440;313441;313442;313443;313444;313445;313446;313447;313448;313449;313450;313451	313427			35	
NAVLAAMAEMVLQVLSGDQLEAAAR	0	Unmodified	2570.3196	0.31964294	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.49	99.773	3	1.1391E-14	59099	160513_QHF_FH_JSI10Kac_6	152.07	138.94			0.54837	0.64335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54837	0.64335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118440000	99550000	18887000	0	0	0	118440000	99550000	18887000	0	0	0	0	0	0	37999	2605	35736	233139	313452	313452			1	
NAVLAIYTIYR	0	Unmodified	1295.7238	0.72377215	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.53	6.16		4	2	3					6	3	5	4	3	81.298	75.635	2	1.0278E-19	39804	160513_QHF_FH_JSI11Kac_6	163.16	148.01			1.2135	1.1418	66.788	11	7	Median	1.7442	1.4698	39.878	2	1	Median	1.0188	1.2549	101.15	3	2	Median	1.2135	1.1418	16.849	3	1	Median	0.66013	0.74077	102.43	3	3	Median	5167100000	2606300000	2560900000	919530000	438110000	481420000	2169700000	1176400000	993370000	1145100000	599710000	545370000	932800000	392070000	540730000	38000	1804	35737	233140;233141;233142;233143;233144;233145;233146;233147;233148;233149;233150;233151;233152;233153;233154	313453;313454;313455;313456;313457;313458;313459;313460;313461;313462;313463;313464;313465;313466;313467;313468;313469;313470;313471;313472	313456			20	
NAVLEADFAK	1	Unmodified	1076.5502	0.55022446	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.651	47.253	2	0.028836	40310	160511_QHF_FH_JSI12i_2	40.058	27.851			0.98225	1.0998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98225	1.0998	NaN	1	0	Median	353840000	171870000	181970000	0	0	0	0	0	0	0	0	0	353840000	171870000	181970000	38001	4267	35738	233155	313473	313473			1	
NAVLFEAISLIIHHDSEPNLLVR	0	Unmodified	2599.4122	0.41222142	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.917	89.497	3;4	7.3336E-36	53566	160513_QHF_FH_JSI10Kac_6	216.82	179.75			0.73263	0.74534	208.36	6	6	Median	0.43716	0.37898	NaN	1	1	Median	0.57455	0.67427	109.83	2	2	Median	2.104	2.0358	363.48	2	2	Median	10.284	10.957	NaN	1	1	Median	820980000	321340000	499640000	158830000	60154000	98675000	336370000	176680000	159690000	192540000	79480000	113060000	133240000	5019800	128220000	38002	635	35739	233156;233157;233158;233159;233160;233161;233162;233163	313474;313475;313476;313477;313478;313479;313480;313481	313481			8	
NAVLNTEAR	0	Unmodified	986.51451	0.51450765	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	15.57	15.084	2	3.1741E-05	12156	160511_QHF_FH_JSI11i_2	101.64	72.07			0.91365	0.95212	16.179	7	1	Median	1.1236	1.0036	NaN	1	0	Median	0.72172	0.87866	11.355	2	0	Median	1.1083	1.1028	28.686	2	1	Median	0.93618	1.0094	9.6504	2	0	Median	558300000	279440000	278860000	46566000	19014000	27551000	170420000	88272000	82148000	181280000	95310000	85972000	160030000	76848000	83184000	38003	3951	35740	233164;233165;233166;233167;233168;233169;233170;233171	313482;313483;313484;313485;313486;313487;313488	313487			7	
NAVSVHSNLNSEAVMK	1	Unmodified	1698.8359	0.83591814	2914	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	36.158	35.275	3	0.038695	29984	160511_QHF_FH_JSI11i_2	30.418	23.981			0.47403	0.51971	50.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69718	0.74027	NaN	1	1	Median	0.3223	0.36486	NaN	1	1	Median	49746000	29385000	20362000	0	0	0	0	0	0	39095000	20726000	18370000	10651000	8658800	1991900	38004	2914	35741	233172;233173	313489;313490	313490			2	
NAVTQEFGPVPDTAR	0	Unmodified	1600.7845	0.7845345	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.2	6.37	3						2			2	2		1	53.673	50.301	2	6.852E-07	44940	160511_QHF_FH_JSI9i_1	166.62	129.28			1.0595	0.88114	23.319	4	4	Median	1.0707	0.88114	0.90411	2	2	Median	0.54652	0.64611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0519	1.1424	NaN	1	1	Median	1150800000	676720000	474070000	1036000000	596000000	440030000	112690000	79860000	32829000	0	0	0	2077900	864810	1213100	38005	4315	35742	233174;233175;233176;233177;233178	313491;313492;313493;313494;313495	313494			5	
NAVTQFVSSMSASADVLALAK	1	Unmodified	2109.0776	0.077604979	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	9	7		2							2			2	2	99.364	94.579	3	1.0013E-36	87811	160511_QHF_FH_JSI12i_2	189.48	170.19			1.0299	1.0286	9.5372	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0299	1.0071	9.6583	2	0	Median	0.98172	1.0682	12.037	2	0	Median	921160000	460440000	460720000	0	0	0	0	0	0	533790000	261590000	272200000	387370000	198850000	188520000	38006	1611	35743	233179;233180;233181;233182	313496;313497;313498;313499;313500	313496			5	
NAVVVITGATSGLGK	1	Unmodified	1385.7878	0.78782897	3052	Q6IAN0	DHRS7B	Dehydrogenase/reductase SDR family member 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15	0								3		1	1	1		73.545	62.814	2	0.0047471	33554	160513_QHF_FH_JSI11Kac_5	70.54	53.104			2.147	2.0426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.147	2.0426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2705700	572140	2133500	0	0	0	0	0	0	2705700	572140	2133500	0	0	0	38007	3052	35744	233183;233184;233185	313501;313502;313503	313502			3	
NAVWALSNLCR	0	Unmodified	1302.6503	0.65028963	439;1767;254	O15131;P52294;O60684	KPNA5;KPNA1;KPNA6	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.249	69.301	2	0.00086711	60575	160511_QHF_FH_JSI11i_2	78.932	52.417			2.8381	3.022	49.812	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.153	2.1249	NaN	1	1	Median	3.7411	4.298	NaN	1	1	Median	212730000	68441000	144290000	0	0	0	0	0	0	145720000	50690000	95031000	67013000	17751000	49262000	38008	254;1767;439	35745	233186;233187	313504;313505	313505			2	
NAWADNANACAK	1	Unmodified	1304.5568	0.55678317	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.746	19.623	2	0.0033201	16804	160511_QHF_FH_JSI11i_1	57.888	44.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38009	4991	35746	233188	313506	313506			1	
NAWNYMLNNYTK	1	Unmodified	1530.6925	0.69254837	2710	Q15800	MSMO1	Methylsterol monooxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	69.11	68.28	2	5.6123E-06	60586	160511_QHF_FH_JSI10i_2	119.34	89.862			0.84389	0.93952	37.625	6	5	Median	1.5675	1.382	NaN	1	0	Median	0.84389	1.0128	27.849	2	2	Median	0.78558	0.78975	41.787	2	2	Median	0.52129	0.56905	NaN	1	1	Median	318300000	158940000	159360000	32552000	14128000	18425000	104080000	52680000	51404000	144300000	69582000	74717000	37368000	22551000	14817000	38010	2710	35747	233189;233190;233191;233192;233193;233194	313507;313508;313509;313510;313511;313512;313513	313512			7	
NAYAVLYDIILK	1	Unmodified	1394.781	0.78095267	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	4	2	3	2	100.27	97.709	2	1.756E-16	89766	160511_QHF_FH_JSI9i_2	167.09	129.61			0.86006	0.9273	140.01	11	4	Median	1.94	1.5993	223.9	4	3	Median	0.63303	0.75137	29.752	2	0	Median	1.1203	1.1416	121.93	3	1	Median	0.80102	0.91594	2.1374	2	0	Median	5388800000	2513400000	2875400000	1687800000	837300000	850460000	786760000	462400000	324360000	1990300000	757170000	1233100000	923970000	456540000	467430000	38011	2244	35748	233195;233196;233197;233198;233199;233200;233201;233202;233203;233204;233205	313514;313515;313516;313517;313518;313519;313520;313521;313522;313523;313524;313525;313526;313527;313528;313529	313521			16	
NAYHAVYKQSVTSSA	1	Acetyl (K)	1666.7951	0.79509919	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.063	36.633	2	0.051836	20599	160513_QHF_FH_JSI11Kac_5	49.5	43.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1414000	1414000	0	0	0	0	0	0	0	1414000	1414000	0	0	0	0	38012	5507	35749	233206	313530	313530			1	
NAYMLVYR	0	Unmodified	1028.5113	0.51133653	3331	Q86UV5	USP48	Ubiquitin carboxyl-terminal hydrolase 48	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	57.935	48.109	2	0.0048467	25095	160513_QHF_FH_JSI12Kac_6	84.699	53.409			0.61947	0.61089	109.19	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61947	0.61089	NaN	1	1	Median	1.1524	1.2608	142.63	2	2	Median	34074000	17377000	16696000	0	0	0	0	0	0	15579000	8246500	7332900	18494000	9131000	9363200	38013	3331	35750	233207;233208;233209;233210	313531;313532;313533;313534	313533			4	
NAYTMVLHKHGEK	2	Acetyl (K)	1568.7769	0.7769467	2455	Q13618	CUL3	Cullin-3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		42.891	33.271	3	0.032497	18259	160513_QHF_FH_JSI11Kac_6	39.509	26.948			0.43445	0.42858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43445	0.42858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3904400	3049500	854900	0	0	0	0	0	0	3904400	3049500	854900	0	0	0	38014	2455	35751	233211	313535	313535			1	
NAYVWSQK	1	Unmodified	994.48723	0.48723027	3879	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		29.476	29.102	2	0.016777	24581	160511_QHF_FH_JSI11i_2	47.574	29.539			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38015	3879	35752	233212	313536	313536			1	
NAYVWTLK	1	Unmodified	993.52837	0.5283668	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	6.72		5	1				1		4	3	3	3	2	60.248	55.329	2	0.0007704	47609	160511_QHF_FH_JSI11i_2	98.458	87.585			0.84798	0.89428	61.923	11	4	Median	1.4212	1.2204	118.83	3	2	Plateau	0.40473	0.49756	36.099	3	2	Plateau	0.90705	0.89428	17.026	3	0	Median	0.87012	0.92483	4.5712	2	0	Median	1127400000	660680000	466730000	275900000	161640000	114260000	327940000	212510000	115430000	279290000	145540000	133750000	244280000	140990000	103290000	38016	255	35753	233213;233214;233215;233216;233217;233218;233219;233220;233221;233222;233223	313537;313538;313539;313540;313541;313542;313543;313544;313545;313546;313547;313548;313549;313550	313543			14	
NCAAYLK	1	Unmodified	838.40072	0.40072345	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	15.638	15.062	2	0.029706	12156	160511_QHF_FH_JSI12i_2	54.525	37.598			1.2725	1.3432	104.2	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64327	0.64289	NaN	1	0	Median	2.5172	2.8062	NaN	1	1	Median	164100000	67221000	96878000	0	0	0	0	0	0	67127000	31909000	35219000	96972000	35312000	61659000	38017	1436;1437;3263;1445	35754	233224;233225	313551;313552	313551			2	
NCAAYLKLR	1	Acetyl (K)	1149.5965	0.59646314	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	1	0	0	1			By MS/MS		15	0								1				1		56.793	45.946	2	0.023028	25229	160513_QHF_FH_JSI11Kac_5	61.962	54.132			0.17419	0.17215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17419	0.17215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3726000	3557500	168560	0	0	0	0	0	0	3726000	3557500	168560	0	0	0	38018	1436;1437;3263;1445	35755	233226	313553	313553	1409		1	
NCETDTLINYMAK	1	Unmodified	1571.696	0.69597877	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			66.319	65.986	2	0.013219	59760	160511_QHF_FH_JSI10i_1	54.286	40.004			1.3223	1.5486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3223	1.5486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28808000	13713000	15095000	0	0	0	28808000	13713000	15095000	0	0	0	0	0	0	38019	1814	35756	233227	313554	313554			1	
NCGQMSEIEAK	1	Unmodified	1265.538	0.53802156	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	22.386	21.882	2	0.00051864	19162	160511_QHF_FH_JSI12i_1	85.622	72.245			4.3536	4.5049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.3536	4.5049	NaN	1	1	Median	52614000	16241000	36373000	0	0	0	0	0	0	0	0	0	52614000	16241000	36373000	38020	5616	35757	233228;233229	313555;313556	313555			2	
NCGQTVHDEVANK	1	Unmodified	1470.6521	0.65214012	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	10.316	9.9521	2;3	0.027334	7580	160511_QHF_FH_JSI12i_2	34.179	29.787			1.6266	1.6936	68.178	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0574	1.0458	NaN	1	1	Median	2.5022	2.7427	NaN	1	1	Median	55908000	26918000	28990000	0	0	0	0	0	0	41156000	22198000	18958000	14751000	4719500	10032000	38021	225	35758	233230;233231;233232	313557;313558;313559	313557			3	
NCHLNENIEK	1	Unmodified	1269.5772	0.57718426	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	13.905	13.547	2;3	0.0016096	10941	160511_QHF_FH_JSI12i_2	55.718	38.776			0.28805	0.3155	75.169	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.60618	0.75091	NaN	1	0	Median	0.51112	0.52381	102.16	2	2	Median	NaN	NaN	NaN	0	0	Median	231250000	147160000	84091000	0	0	0	61256000	32334000	28923000	169990000	114820000	55168000	0	0	0	38022	2480	35759	233233;233234;233235;233236	313560;313561;313562;313563	313560			4	
NCIAQTSAVVK	1	Unmodified	1189.6125	0.61250714	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.032	26.363	2	0.00057336	23170	160511_QHF_FH_JSI10i_1	76.282	61.344			6.52	6.5899	27.492	3	3	Median	8.0021	6.5899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.3342	4.2101	NaN	1	1	Median	6.52	6.9416	NaN	1	1	Median	1356000000	65551000	1290400000	727210000	18949000	708260000	0	0	0	292220000	21691000	270530000	336550000	24912000	311640000	38023	2842	35760	233237;233238;233239;233240	313564;313565;313566;313567	313566			4	
NCIDITGVR	0	Unmodified	1046.5179	0.51787847	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	37.439	36.955	2	0.039161	33100	160511_QHF_FH_JSI10i_1	46.39	26.687			1.0369	1.1589	4.0341	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93171	1.1263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.154	1.1925	NaN	1	0	Median	139530000	64616000	74917000	0	0	0	66833000	31124000	35708000	0	0	0	72701000	33492000	39209000	38024	2326	35761	233241;233242	313568;313569	313569			2	
NCIGDFLK	1	Unmodified	965.46405	0.46405199	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	55.917	55.075	2	0.0069834	47162	160511_QHF_FH_JSI12i_2	60.91	36.938			0.9885	1.0209	26.297	5	0	Median	1.208	1.0209	NaN	1	0	Median	0.9885	1.1992	NaN	1	0	Median	0.88001	0.86147	2.127	2	0	Median	1.4379	1.6108	NaN	1	0	Median	295170000	151570000	143600000	29306000	14423000	14883000	53768000	26422000	27346000	142130000	81257000	60870000	69973000	29471000	40502000	38025	3343	35762	233243;233244;233245;233246;233247	313570;313571	313570			2	
NCISTVVHQGLIR	0	Unmodified	1495.7929	0.79293112	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	2	2	2	50.231	48.419	2	9.2979E-05	41764	160511_QHF_FH_JSI12i_2	95.573	77.709			0.69942	0.78345	87.129	6	4	Median	2.1282	1.8636	NaN	1	1	Median	0.65914	0.80957	NaN	1	0	Median	0.53301	0.51661	54.252	2	2	Median	0.58784	0.63908	152.94	2	1	Median	143610000	80361000	63252000	12490000	4053900	8435900	36917000	23305000	13613000	61122000	36526000	24596000	33085000	16477000	16608000	38026	2094	35763	233248;233249;233250;233251;233252;233253;233254	313572;313573;313574;313575;313576;313577;313578;313579;313580	313574			9	
NCIVLIDSTPYR	0	Unmodified	1449.7286	0.72859953	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.86	6.14	4	4	5				3	5		5	7	5	4	68.24	63.008	2	9.3403E-19	33507	160513_QHF_FH_JSI10Kac_4	147.74	137.79			1.0031	1.0993	27.403	18	3	Plateau	1.3021	1.1015	13.288	4	1	Median	1.0032	1.2045	40.067	6	2	Median	0.92441	0.92649	8.8197	4	0	Median	1.0426	1.2071	10.046	4	0	Linear	1553800000	804780000	749060000	168990000	73649000	95338000	373710000	191870000	181840000	643800000	363700000	280110000	367340000	175570000	191770000	38027	1985	35764	233255;233256;233257;233258;233259;233260;233261;233262;233263;233264;233265;233266;233267;233268;233269;233270;233271;233272;233273;233274;233275	313581;313582;313583;313584;313585;313586;313587;313588;313589;313590;313591;313592;313593;313594;313595;313596;313597;313598;313599;313600;313601;313602;313603;313604;313605;313606;313607;313608;313609;313610;313611;313612;313613;313614;313615	313594			35	
NCIVLIDSTPYRQWYESHYALPLGR	0	Unmodified	3050.5073	0.50726079	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			85.642	79.941	4	5.9632E-09	44801	160513_QHF_FH_JSI10Kac_6	128.07	110.56			3.5082	4.217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.5082	4.217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150350000	30074000	120270000	0	0	0	150350000	30074000	120270000	0	0	0	0	0	0	38028	1985	35765	233276	313616	313616			1	
NCLLLLTYLISELEAAR	0	Unmodified	1991.0761	0.076148416	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.63	96.906	3	8.2684E-05	57284	160513_QHF_FH_JSI10Kac_6	141	111.24			0.78401	0.93423	245.18	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78401	0.93423	245.18	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173770000	95522000	78246000	0	0	0	173770000	95522000	78246000	0	0	0	0	0	0	38029	3614	35766	233277;233278	313617;313618	313617			2	
NCLNPQFSK	1	Unmodified	1106.5179	0.51787847	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		36.933	27.485	2	0.013934	16911	160513_QHF_FH_JSI11Kac_4	53.327	42.859			0.8614	0.86286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8614	0.86286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3753000	2087100	1665900	0	0	0	0	0	0	3753000	2087100	1665900	0	0	0	38030	479	35767	233279	313619	313619			1	
NCLTNFHGMDLTR	0	Unmodified	1577.7079	0.70788086	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	2	3	54.379	53.525	2;3	7.3197E-06	45955	160511_QHF_FH_JSI12i_2	100.54	80.532			1.1601	1.2671	18.411	7	1	Median	1.3218	1.1256	NaN	1	0	Median	1.131	1.3558	NaN	1	1	Median	0.86826	0.89329	3.151	2	0	Median	1.1601	1.2982	2.7619	3	0	Plateau	2095000000	1059000000	1036000000	196610000	96095000	100510000	91461000	39004000	52457000	1168700000	650100000	518590000	638200000	273750000	364450000	38031	1948	35768	233280;233281;233282;233283;233284;233285;233286;233287	313620;313621;313622;313623;313624;313625;313626;313627;313628;313629;313630;313631;313632;313633	313624			14	
NCMTDLLAK	1	Unmodified	1064.4995	0.49945121	2159	Q00765	REEP5	Receptor expression-enhancing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.738	52.069	2	0.0029208	47321	160511_QHF_FH_JSI12i_1	62.582	50.535			1.1056	1.1957	50.137	4	2	Median	0.6153	0.51347	NaN	1	1	Median	1.1517	1.3603	NaN	1	0	Median	1.0614	1.051	NaN	1	1	Median	1.5603	1.5967	NaN	1	0	Median	261200000	134260000	126940000	23522000	15345000	8177600	68204000	31438000	36766000	102240000	53448000	48791000	67230000	34028000	33202000	38032	2159	35769	233288;233289;233290;233291	313634;313635;313636;313637;313638	313636			5	
NCNDFQYESK	1	Unmodified	1303.5139	0.5139153	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	20.394	20.102	2	2.2893E-05	17299	160511_QHF_FH_JSI11i_1	107.79	104.53			0.90253	0.893	86.813	6	6	Median	NaN	NaN	NaN	0	0	Median	0.74647	0.88016	122.73	2	2	Median	0.8094	0.77086	95.442	2	2	Median	1.0898	1.1402	109.2	2	2	Median	420550000	211570000	208980000	0	0	0	117140000	65559000	51579000	145740000	72702000	73038000	157670000	73306000	84363000	38033	2224	35770	233292;233293;233294;233295;233296;233297	313639;313640;313641;313642;313643;313644	313640			6	
NCPHIVVGTPGR	0	Unmodified	1305.6612	0.66118866	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	4	3	27.308	26.582	2;3	2.7112E-05	23219	160511_QHF_FH_JSI10i_2	108.47	85.829			0.85596	0.94608	37.585	10	1	Median	1.1481	0.98236	6.6169	2	0	Median	0.76444	0.94608	0.32011	2	0	Median	0.62024	0.62407	50.675	3	0	Median	0.77922	0.86328	33.689	3	1	Plateau	1334900000	692410000	642520000	124510000	58224000	66284000	398980000	195770000	203210000	518460000	309020000	209440000	292990000	129410000	163580000	38034	2474	35771	233298;233299;233300;233301;233302;233303;233304;233305;233306;233307;233308	313645;313646;313647;313648;313649;313650;313651;313652;313653;313654	313653			10	
NCPHVVVGTPGR	0	Unmodified	1291.6455	0.6455386	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	21.529	20.795	2;3	8.9112E-05	17146	160511_QHF_FH_JSI11i_2	67.519	62.46			0.87529	0.98302	26.473	9	3	Median	1.1603	0.98488	33.981	2	1	Median	0.83878	1.0258	6.023	2	0	Median	0.74432	0.76269	29.368	3	2	Median	0.98011	1.1097	24.905	2	0	Median	708770000	363540000	345230000	90650000	39779000	50871000	200190000	100480000	99703000	251240000	142780000	108450000	166700000	80494000	86205000	38035	97	35772	233309;233310;233311;233312;233313;233314;233315;233316;233317	313655;313656;313657;313658;313659;313660;313661;313662;313663;313664;313665;313666	313662			12	
NCPWTVALWSR	0	Unmodified	1388.6659	0.66593969	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.505	74.909	2	0.046662	41083	160513_QHF_FH_JSI10Kac_6	48.741	18.931			0.90216	1.0415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90216	1.0415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53264000	25249000	28015000	0	0	0	53264000	25249000	28015000	0	0	0	0	0	0	38036	2604	35773	233318	313667	313667			1	
NCSETQYESK	1	Unmodified	1244.4979	0.49793089	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.008	5.6948	2	2.0512E-09	5760	160511_QHF_FH_JSI10i_1	130.98	115.32			0.83369	0.90605	20.339	7	1	Median	0.70773	0.5768	NaN	1	1	Median	0.79906	0.94695	6.2438	2	0	Median	0.83925	0.82328	5.3461	2	0	Median	0.96344	1.0225	0.3734	2	0	Median	1893000000	967590000	925450000	276130000	139020000	137100000	466220000	248960000	217260000	697300000	353640000	343660000	453400000	225970000	227430000	38037	1976	35774	233319;233320;233321;233322;233323;233324;233325	313668;313669;313670;313671;313672;313673;313674;313675;313676;313677;313678;313679;313680	313674			13	
NCSSFLIK	1	Unmodified	967.4797	0.47970205	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.28	2	3	2					4		1	4	5	1	42.615	38.475	2	0.010658	34527	160511_QHF_FH_JSI11i_1	63.48	44.002			0.95814	0.99451	57.228	11	7	Median	0.87749	0.7393	NaN	1	0	Median	1.1205	1.3306	68.737	4	3	Median	0.95814	0.94344	55.414	5	4	Median	1.3683	1.5086	NaN	1	0	Median	2047200000	1104200000	943030000	9091300	4750100	4341200	522020000	210980000	311040000	1508300000	884780000	623510000	7809800	3663200	4146600	38038	1592	35775	233326;233327;233328;233329;233330;233331;233332;233333;233334;233335;233336	313681;313682;313683;313684;313685;313686;313687;313688;313689;313690;313691;313692;313693	313682			13	
NCSSFLIKR	1	Acetyl (K)	1165.5914	0.59137776	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		55.03	44.663	2	0.024647	24624	160513_QHF_FH_JSI11Kac_5	76.064	62.485			0.17758	0.17131	154.3	3	0	Plateau	NaN	NaN	NaN	0	0	Median	2.4371	2.8526	NaN	1	0	Median	0.20534	0.19968	21.669	2	0	Median	NaN	NaN	NaN	0	0	Median	38297000	30335000	7961100	0	0	0	2954100	876630	2077500	35342000	29459000	5883600	0	0	0	38039	1592	35776	233337;233338;233339	313694;313695	313695	1613		2	
NCTAGAVYTYHEK	1	Unmodified	1512.6667	0.66672755	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		19.766	19.458	2;3	4.4808E-05	15980	160511_QHF_FH_JSI11i_2	78.692	69.688			0.88409	0.88778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88409	0.88778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63388000	33842000	29546000	0	0	0	0	0	0	63388000	33842000	29546000	0	0	0	38040	5554	35777	233340;233341	313696;313697	313697			2	
NCTIVSPDAGGAK	1	Unmodified	1288.6082	0.60815004	1920	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	26.464	23.265	2	0.00011631	20659	160511_QHF_FH_JSI12i_1	112.94	105.29			1.2967	1.2299	33.556	6	2	Median	1.4705	1.1996	NaN	1	0	Median	1.0847	1.2611	NaN	1	0	Median	0.9426	0.90903	26.402	2	1	Median	1.7219	1.811	12.087	2	1	Median	508460000	194210000	314250000	101940000	38628000	63316000	97894000	45869000	52025000	154890000	43494000	111400000	153730000	66220000	87510000	38041	1920	35778	233342;233343;233344;233345;233346;233347	313698;313699;313700;313701;313702;313703;313704;313705;313706;313707	313701			10	
NCVAIAADRR	0	Unmodified	1144.5771	0.57712468	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.58	3.77		6	5						1	2	4	4	2	13.692	12.828	2;3	1.3908E-05	9932	160511_QHF_FH_JSI12i_3	101.72	69.111			0.91623	0.93068	40.728	12	1	Median	0.91623	0.81088	6.3971	2	0	Median	0.98705	1.1618	30.457	4	1	Median	1.1787	1.146	65.805	4	0	Median	1.0421	1.0422	27.784	2	0	Median	1154300000	563280000	591070000	152010000	79819000	72190000	293490000	161450000	132050000	452470000	217330000	235140000	256380000	104690000	151690000	38042	1672	35779	233348;233349;233350;233351;233352;233353;233354;233355;233356;233357;233358;233359	313708;313709;313710;313711;313712;313713;313714;313715;313716;313717;313718;313719;313720;313721	313720			14	
NCWQNYLDFHR	0	Unmodified	1551.6677	0.6677306	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	1	2	66.515	63.906	2;3	1.2382E-05	56750	160511_QHF_FH_JSI11i_3	89.403	82.364			0.9804	0.93752	23.592	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69328	0.83478	NaN	1	0	Median	0.9804	0.93752	NaN	1	0	Median	1.3004	1.3146	NaN	1	0	Median	380430000	179680000	200750000	0	0	0	22059000	10882000	11177000	181480000	83624000	97853000	176890000	85175000	91718000	38043	1061	35780	233360;233361;233362;233363	313722;313723;313724;313725;313726;313727	313723			6	
NDAETLQK	1	Unmodified	917.44543	0.44542503	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.2869	8.5538	2	0.017645	6150	160511_QHF_FH_JSI9i_1	58.426	29.508			1.2499	1.0224	NaN	1	1	Median	1.2499	1.0224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185120000	110850000	74270000	185120000	110850000	74270000	0	0	0	0	0	0	0	0	0	38044	4337	35781	233364	313728	313728			1	
NDALEMVEETTWQGLK	1	Unmodified	1862.872	0.87202888	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.496	7	9								1	6	5	4	95.897	95.64	2;3	1.0941E-07	86735	160511_QHF_FH_JSI10i_1	132.97	118.29			1.0493	1.0969	36.059	16	8	Median	1.1867	1.0044	NaN	1	0	Median	0.94692	1.1392	55.567	6	4	Median	1.0618	1.0978	24.804	5	3	Median	1.0696	1.1698	14.778	4	1	Median	628510000	309850000	318660000	39519000	21978000	17541000	264100000	139320000	124780000	210130000	103620000	106500000	114770000	44928000	69840000	38045	1675	35782	233365;233366;233367;233368;233369;233370;233371;233372;233373;233374;233375;233376;233377;233378;233379;233380	313729;313730;313731;313732;313733;313734;313735;313736;313737;313738;313739;313740;313741;313742;313743;313744;313745;313746;313747;313748;313749;313750;313751	313740			22	
NDALSMIIK	1	Unmodified	1003.5372	0.53721693	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	2	3	1	67.963	64.33	2	0.040823	55576	160511_QHF_FH_JSI12i_2	65.305	46.575			1.0883	1.1033	40.114	7	0	Median	1.0744	0.94841	NaN	1	0	Median	0.69878	0.84393	66.585	2	0	Median	1.0513	1.0315	35.925	3	0	Plateau	1.0963	1.2573	NaN	1	0	Median	180290000	94114000	86172000	27955000	12672000	15283000	25913000	15735000	10179000	78618000	40126000	38492000	47800000	25581000	22218000	38046	3921	35783	233381;233382;233383;233384;233385;233386;233387	313752;313753;313754	313752			1	
NDANPETHAFVTSPEIVTALAIAGTLK	1	Unmodified	2779.4392	0.43922403	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.8	101.69	3	6.0194E-36	87561	160511_QHF_FH_JSI12i_2	159.65	155.84			0.8415	0.83929	16.27	4	2	Median	0.9358	0.80054	NaN	1	1	Median	0.51643	0.63867	NaN	1	1	Median	0.89906	0.9204	NaN	1	0	Median	0.78762	0.87991	NaN	1	0	Median	852040000	499300000	352740000	111550000	62572000	48982000	180900000	123110000	57790000	282090000	156720000	125370000	277490000	156890000	120600000	38047	4315	35784	233388;233389;233390;233391	313755;313756;313757;313758	313755			4	
NDAPVVQEPR	0	Unmodified	1123.5622	0.56218613	2181	Q01974;Q01973	ROR2;ROR1	Tyrosine-protein kinase transmembrane receptor ROR2;Tyrosine-protein kinase transmembrane receptor ROR1	yes	no	0	0	0	0				By MS/MS	1	0	1												1	20.856	20.365	2	0.0037226	17801	160511_QHF_FH_JSI12i_1	58.699	36.613			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38048	2181	35785	233392	313759	313759			1	
NDASEVVLAGER	0	Unmodified	1258.6153	0.61534391	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		43.312	34.101	2	0.0024057	19327	160513_QHF_FH_JSI11Kac_3	69.01	50.699			1.5136	1.4723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5136	1.4723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4184000	1790800	2393200	0	0	0	0	0	0	4184000	1790800	2393200	0	0	0	38049	4259	35786	233393	313760	313760			1	
NDDDSSEAMNDILAQVATNTETSK	1	Unmodified	2568.1133	0.11333438	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	91.416	91.133	3	0.0028366	82847	160511_QHF_FH_JSI11i_1	34.839	33.657			0.98014	1.0958	17.044	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.93691	1.0958	NaN	1	0	Median	1.1248	1.0606	NaN	1	0	Median	1.463	1.4463	NaN	1	1	Median	67590000	31967000	35623000	0	0	0	28857000	13630000	15227000	23532000	13413000	10119000	15201000	4924000	10277000	38050	369	35787	233394;233395;233396	313761;313762	313761			2	
NDDIADGNPK	1	Unmodified	1057.4676	0.46761704	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.278	10.894	2	0.0078028	8774	160511_QHF_FH_JSI12i_1	60.064	45.857			1.8907	1.9512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8907	1.9512	NaN	1	0	Median	73987000	18185000	55802000	0	0	0	0	0	0	0	0	0	73987000	18185000	55802000	38051	2636	35788	233397	313763	313763			1	
NDDLNKPINK	2	Acetyl (K)	1211.6146	0.61461563	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	0.495					3	4				1	2	2	2	34.404	24.379	2	4.9741E-08	5907	160513_QHF_FH_JSI9Kac_3	134.23	113.33			0.99011	0.96521	7.5815	7	0	Median	1.167	0.96521	NaN	1	0	Median	0.77766	0.93039	1.9342	2	0	Median	1.1112	1.0843	2.8815	2	0	Median	0.92343	1.0075	9.1756	2	0	Median	205230000	106050000	99184000	55413000	25618000	29795000	53860000	32165000	21695000	32979000	16416000	16563000	62981000	31851000	31130000	38052	2789	35789	233398;233399;233400;233401;233402;233403;233404	313764;313765;313766;313767;313768;313769;313770;313771;313772	313767	2686		9	
NDEELNK	1	Unmodified	860.38758	0.3875758	819;2765;1091	Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;P16104;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;H2AFX;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	7.1766	6.8606	2	0.012699	4554	160511_QHF_FH_JSI11i_1	73.039	48.04			0.588	0.70401	79.388	5	5	Median	1.3535	1.1011	NaN	1	1	Median	1.2663	1.5202	108.86	2	2	Median	0.50471	0.48819	NaN	1	1	Median	0.4586	0.48918	NaN	1	1	Median	3139400000	1360200000	1779100000	657860000	174900000	482960000	1272300000	530320000	741940000	548170000	322500000	225670000	661070000	332500000	328570000	38053	819;1091;2765	35790	233405;233406;233407;233408;233409	313773;313774;313775;313776;313777	313773			5	
NDEVLPVMYIHR	0	Unmodified	1484.7446	0.74458394	3680	Q8TAD8	SNIP1	Smad nuclear-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65.032	64.485	3	0.00055414	56188	160511_QHF_FH_JSI11i_2	56.956	49.172			1.1447	1.212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1447	1.212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38085000	12529000	25557000	0	0	0	0	0	0	38085000	12529000	25557000	0	0	0	38054	3680	35791	233410	313778;313779	313778			2	
NDFEIVLPENAEK	1	Unmodified	1516.7409	0.74093835	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.15	0.361	11	2								4	3	3	3	71.158	70.557	2;3	1.9595E-05	64306	160511_QHF_FH_JSI11i_1	134.99	119.45			0.84651	0.90303	26.794	12	7	Median	1.1558	0.95257	42.648	4	3	Median	0.79726	0.9306	14.069	3	1	Median	0.78485	0.76507	24.243	3	2	Median	0.89878	0.92327	7.3894	2	1	Median	778980000	413330000	365650000	227430000	102620000	124810000	213770000	128310000	85455000	229820000	120570000	109250000	107970000	61826000	46139000	38055	4271	35792	233411;233412;233413;233414;233415;233416;233417;233418;233419;233420;233421;233422;233423	313780;313781;313782;313783;313784;313785;313786;313787;313788;313789;313790	313782			11	
NDFGNFFGSAVTK	1	Unmodified	1402.6517	0.65172941	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		74.378	73.747	2	0.0025502	64633	160511_QHF_FH_JSI11i_2	66.538	50.284			1.3761	1.3969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3761	1.3969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34330000	14752000	19578000	0	0	0	0	0	0	34330000	14752000	19578000	0	0	0	38056	3425	35793	233424;233425	313791;313792	313791			2	
NDFTEEEEAQVR	0	Unmodified	1465.6321	0.63211618	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.77	7					4				1	3	3	4	36.622	33.065	2	4.1777E-05	18794	160513_QHF_FH_JSI11Kac_3	93.058	83.104			0.97004	1.0465	24.963	11	9	Median	1.4873	1.2329	NaN	1	1	Median	0.89423	1.0465	6.4785	3	2	Median	0.94277	0.92831	6.6535	3	2	Median	1.2362	1.2993	40.856	4	4	Median	1220900000	623400000	597490000	160530000	68417000	92112000	419780000	231650000	188140000	360540000	185990000	174550000	280030000	137350000	142690000	38057	2057	35794	233426;233427;233428;233429;233430;233431;233432;233433;233434;233435;233436	313793;313794;313795;313796;313797;313798;313799;313800;313801;313802;313803;313804;313805	313798			13	
NDFTEEEEAQVRK	1	Unmodified	1593.7271	0.7270792	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.65	7	7	1				3			2	5	4	7	30.085	28.291	2;3	1.1304E-40	25520	160511_QHF_FH_JSI12i_1	203.11	185.74			1.0694	1.0951	71.243	15	4	Median	1.289	1.0676	NaN	1	0	Median	0.82531	0.97913	118.67	4	2	Median	1.1524	1.1806	5.524	4	0	Median	1.017	1.1236	71.365	6	2	Median	3978500000	1779100000	2199300000	198920000	70227000	128690000	1009400000	395240000	614180000	1339100000	646620000	692450000	1431000000	667060000	763980000	38058	2057	35795	233437;233438;233439;233440;233441;233442;233443;233444;233445;233446;233447;233448;233449;233450;233451;233452;233453;233454	313806;313807;313808;313809;313810;313811;313812;313813;313814;313815;313816;313817;313818;313819;313820;313821;313822;313823;313824;313825;313826;313827;313828;313829	313813			24	
NDGAAILAAVSSIAQK	1	Unmodified	1527.8257	0.82567103	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	2	16								4	5	5	4	96.967	96.736	2;3	3.5503E-06	84734	160511_QHF_FH_JSI9i_2	119.62	104.35			0.58339	0.6067	85.113	17	17	Median	1.0041	0.85925	107.32	4	4	Median	0.468	0.52075	96.646	5	5	Median	1.1051	1.14	86.609	4	4	Median	0.89392	0.95576	81.262	4	4	Median	456950000	245250000	211700000	114350000	63769000	50577000	107620000	62295000	45325000	110940000	56161000	54782000	124040000	63025000	61018000	38059	1306	35796	233455;233456;233457;233458;233459;233460;233461;233462;233463;233464;233465;233466;233467;233468;233469;233470;233471;233472	313830;313831;313832;313833;313834;313835;313836;313837;313838;313839;313840;313841;313842;313843;313844;313845;313846;313847;313848;313849;313850;313851;313852	313838			23	
NDGVGQISGFYVGR	0	Unmodified	1467.7106	0.71064128	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		61.259	60.747	2	0.0037815	54908	160511_QHF_FH_JSI10i_1	56.122	47.393			0.44932	0.43973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44932	0.43973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13488000	9991200	3496400	0	0	0	0	0	0	13488000	9991200	3496400	0	0	0	38060	4380	35797	233473;233474;233475	313853;313854;313855	313853			3	
NDGVLLLQALTR	0	Unmodified	1311.751	0.75104953	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.95	92.502	2	0.0022404	81282	160511_QHF_FH_JSI11i_2	71.176	50.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38061	446	35798	233476	313856	313856			1	
NDHIQVGR	0	Unmodified	937.47298	0.47297719	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.8475	8.6504	2	0.025833	6297	160511_QHF_FH_JSI11i_2	42.599	30.694			1.4656	1.4615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4656	1.4615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46231000	20568000	25663000	0	0	0	0	0	0	46231000	20568000	25663000	0	0	0	38062	3439	35799	233477	313857	313857			1	
NDHLYILLSTLEPTDAGILGTTK	1	Unmodified	2484.3112	0.31116997	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.928	87.208	3	2.1873E-05	49975	160513_QHF_FH_JSI10Kac_6	105.73	92.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40108000	40108000	0	0	0	0	40108000	40108000	0	0	0	0	0	0	0	38063	5436	35800	233478	313858	313858			1	
NDHQEDFWK	1	Unmodified	1217.5102	0.51015055	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		29.585	28.931	2;3	0.0039233	25391	160511_QHF_FH_JSI10i_2	46.001	36.569			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38064	4715	35801	233479;233480	313859;313860	313860			2	
NDIAINELMK	1	Unmodified	1159.5907	0.59070906	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	63.232	62.366	2	9.5271E-06	56395	160511_QHF_FH_JSI10i_1	106.88	87.094			1.1692	1.1945	42.231	4	3	Median	2.0989	1.732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1315	1.1012	NaN	1	0	Median	0.82357	0.90648	50.519	2	2	Median	869090000	455140000	413950000	168580000	66821000	101760000	0	0	0	355400000	195620000	159780000	345110000	192700000	152410000	38065	1748	35802	233481;233482;233483;233484;233485	313861;313862;313863;313864;313865	313864			5	
NDIASHPPVEGSYAPR	0	Unmodified	1708.8169	0.81689726	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.28	7	5	1				2			4	4	5	2	36.348	34.335	2;3	2.9365E-10	30805	160511_QHF_FH_JSI10i_1	147.18	131.04			1.1378	1.2132	19.939	15	2	Median	1.6423	1.3783	18.224	4	1	Median	0.99806	1.2093	20.113	4	0	Median	1.0749	1.0569	19.682	5	1	Median	1.0357	1.1278	17.252	2	0	Median	2557900000	1247400000	1310500000	507890000	206470000	301430000	715760000	378170000	337590000	887090000	439350000	447740000	447130000	223420000	223720000	38066	3213	35803	233486;233487;233488;233489;233490;233491;233492;233493;233494;233495;233496;233497;233498;233499;233500	313866;313867;313868;313869;313870;313871;313872;313873;313874;313875;313876;313877;313878;313879;313880;313881;313882;313883;313884;313885;313886;313887;313888;313889;313890	313873			23	
NDIEEQETLLGTIMPEEESAK	1	Unmodified	2375.105	0.10500152	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	1	3	90.065	89.738	2;3	2.3807E-08	81658	160511_QHF_FH_JSI11i_1	88.73	76.937			0.70973	0.74585	19.453	3	2	Median	NaN	NaN	NaN	0	0	Median	0.86946	0.96327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67642	0.70033	8.9069	2	1	Median	43329000	27923000	15406000	0	0	0	12733000	8122400	4610900	0	0	0	30596000	19800000	10796000	38067	3896	35804	233501;233502;233503;233504;233505;233506	313891;313892;313893;313894;313895;313896	313891			6	
NDIHLDADDPNSADK	1	Unmodified	1638.7122	0.71215742	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		27.112	26.86	2	0.00024747	23251	160511_QHF_FH_JSI9i_1	72.089	60.223			0.43025	0.45308	0.55417	2	2	Median	NaN	NaN	NaN	0	0	Median	0.3993	0.45486	NaN	1	1	Median	0.46359	0.45131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39686000	28879000	10806000	0	0	0	25897000	19626000	6271000	13788000	9252600	4535500	0	0	0	38068	4290	35805	233507;233508;233509	313897;313898;313899	313899			3	
NDIHTLLK	1	Unmodified	952.53418	0.53418046	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.87		11							1	4	3	2	3	31.377	29.739	2;3	0.00064888	25963	160511_QHF_FH_JSI10i_2	77.732	56.862			1.268	1.2421	75.03	12	10	Median	1.7097	1.4834	80.332	4	4	Median	1.0753	1.2888	91.631	3	1	Median	0.73109	0.73263	69.444	2	2	Median	2.7364	3.086	85.421	3	3	Plateau	1430100000	650400000	779730000	266680000	108270000	158410000	356950000	187860000	169090000	416950000	194550000	222400000	389550000	159720000	229830000	38069	323	35806	233510;233511;233512;233513;233514;233515;233516;233517;233518;233519;233520;233521	313900;313901;313902;313903;313904;313905;313906;313907;313908;313909;313910;313911;313912	313909			13	
NDILEEPVDSDSTK	1	Unmodified	1560.7155	0.71551146	4732	Q9H582	ZNF644	Zinc finger protein 644	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	43.906	43.27	2	0.0011649	39335	160511_QHF_FH_JSI12i_1	62.258	38.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38070	4732	35807	233522	313913	313913			1	
NDINILK	1	Unmodified	828.47052	0.47051757	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.985	36.718	2	0.027514	32966	160511_QHF_FH_JSI11i_1	53.554	18.73			0.65143	0.63869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65143	0.63869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91058000	48261000	42797000	0	0	0	0	0	0	91058000	48261000	42797000	0	0	0	38071	3903	35808	233523	313914	313914			1	
NDIPEIPESIK	1	Unmodified	1253.6503	0.65033243	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		60.926	60.494	2	0.010903	54849	160511_QHF_FH_JSI11i_1	56.548	36.558			1.9077	1.774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9077	1.774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67943000	21765000	46178000	0	0	0	0	0	0	67943000	21765000	46178000	0	0	0	38072	2506	35809	233524	313915	313915			1	
NDITAWQECVNNSMAQLEHQAVR	0	Unmodified	2713.2337	0.23368148	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.307	98.005	3	0.013318	84318	160511_QHF_FH_JSI12i_2	32.337	29.349			1.9714	2.1984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9714	2.1984	NaN	1	1	Median	15560000	3713200	11847000	0	0	0	0	0	0	0	0	0	15560000	3713200	11847000	38073	585	35810	233525	313916	313916			1	
NDIVNMLVGNK	1	Unmodified	1215.6282	0.6281572	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.961	75.788	2	0.00011478	68732	160511_QHF_FH_JSI10i_1	91.867	72.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38074	4884	35811	233526	313917	313917			1	
NDKSEEEQSSSSVK	2	Unmodified	1552.6853	0.68527397	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	7									2	2	1	2	5.5074	5.1522	2;3	2.9066E-09	3204	160511_QHF_FH_JSI12i_1	151.44	104.18			1.0428	0.92759	12.919	7	0	Median	1.2078	0.9972	12.313	2	0	Median	0.93704	1.0757	21.963	2	0	Median	1.0428	1.007	NaN	1	0	Median	0.87256	0.89557	4.9668	2	0	Median	644770000	329920000	314850000	147470000	73046000	74427000	203430000	102620000	100810000	77863000	38265000	39598000	216000000	115990000	100010000	38075	882	35812	233527;233528;233529;233530;233531;233532;233533	313918;313919;313920;313921;313922;313923;313924;313925	313919			8	
NDLAVVDVR	0	Unmodified	999.53491	0.53490874	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.18	4	5	1			3	3	3		4	6	4	5	48.012	42.782	2	3.4103E-05	38997	160511_QHF_FH_JSI12i_1	100.57	33.877			0.95251	1.0798	10.057	17	1	Median	1.4243	1.1729	4.8917	2	1	Median	0.86038	1.0335	7.4373	6	0	Median	1.0462	1.0295	15.8	4	0	Median	0.96058	1.031	5.3019	5	0	Median	7211200000	3342800000	3868400000	1141700000	462850000	678810000	2166300000	1023200000	1143100000	1902100000	924650000	977410000	2001200000	932160000	1069100000	38076	1154	35813	233534;233535;233536;233537;233538;233539;233540;233541;233542;233543;233544;233545;233546;233547;233548;233549;233550;233551;233552	313926;313927;313928;313929;313930;313931;313932;313933;313934;313935;313936;313937;313938;313939;313940;313941;313942;313943;313944;313945;313946;313947;313948;313949;313950;313951;313952;313953;313954;313955;313956	313933			31	
NDLDAVALMHPDGSAVVVVLNR	0	Unmodified	2304.1896	0.18961504	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.103	93.707	3	0.052476	82345	160511_QHF_FH_JSI11i_2	19.044	10.225			1.5106	1.4514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5106	1.4514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17211000	3991400	13219000	0	0	0	0	0	0	17211000	3991400	13219000	0	0	0	38077	802	35814	233553	313957	313957			1	
NDLDRLFVK	1	Unmodified	1118.6084	0.60840804	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		54.093	53.575	3	0.016346	46301	160511_QHF_FH_JSI11i_2	44.318	28.688			0.9823	1.0274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9823	1.0274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22064000	10770000	11294000	0	0	0	0	0	0	22064000	10770000	11294000	0	0	0	38078	2252	35815	233554	313958	313958			1	
NDLEEAFIHFMGK	1	Unmodified	1549.7235	0.72351415	4381	Q9BRR6	ADPGK	ADP-dependent glucokinase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	100.02	99.888	3	0.022646	88431	160511_QHF_FH_JSI10i_2	46.159	39.12			1.0676	0.97337	29.673	4	0	Median	0.96033	0.80292	NaN	1	0	Median	0.52996	0.68118	NaN	1	0	Median	1.2078	1.18	NaN	1	0	Median	1.1868	1.2566	NaN	1	0	Median	51808000	27516000	24292000	8264200	2680000	5584200	12584000	8422100	4161600	17821000	10237000	7584400	13138000	6176700	6961500	38079	4381	35816	233555;233556;233557;233558	313959	313959			0	
NDLEMGIK	1	Unmodified	918.44807	0.44806757	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	34.727	34.31	2	0.012705	30622	160511_QHF_FH_JSI11i_1	61.999	41.717			0.88734	0.88058	44.297	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2633	1.2045	NaN	1	1	Median	0.62325	0.64378	NaN	1	1	Median	134880000	65437000	69448000	0	0	0	0	0	0	62247000	27878000	34369000	72637000	37559000	35078000	38080	4094	35817	233559;233560;233561	313960;313961;313962	313960			3	
NDLGVGYLLIGDNDNAK	1	Unmodified	1789.8846	0.88464248	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	84.04	83.588	2;3	1.4323E-07	76171	160511_QHF_FH_JSI12i_1	157.68	138.94			0.74019	0.7432	12.302	9	4	Median	0.80991	0.68334	11.874	2	2	Median	0.56124	0.6543	10.518	2	0	Median	0.77731	0.76296	8.6535	3	2	Median	0.78907	0.82085	13.753	2	0	Median	385970000	230000000	155970000	55059000	31336000	23723000	122130000	81538000	40591000	116270000	59936000	56338000	92509000	57189000	35320000	38081	2307	35818	233562;233563;233564;233565;233566;233567;233568;233569;233570	313963;313964;313965;313966;313967;313968;313969;313970;313971;313972;313973;313974;313975;313976;313977;313978	313969			16	
NDLMEYAK	1	Unmodified	982.44298	0.44298219	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.046	36.433	2	0.0039038	32557	160511_QHF_FH_JSI11i_1	70.332	51.793			0.96425	0.79842	22	4	0	Linear	1.6683	1.379	NaN	1	0	Median	0.76314	0.90797	NaN	1	0	Median	0.8666	0.84203	NaN	1	0	Median	1.0729	1.0945	NaN	1	0	Median	506530000	241520000	265010000	113330000	38258000	75076000	132710000	65255000	67456000	143840000	83819000	60026000	116640000	54192000	62448000	38082	779	35819	233571;233572;233573;233574	313979;313980;313981;313982;313983	313979			5	
NDLNPMFLDQVAK	1	Unmodified	1503.7392	0.73916421	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	3	1	1	78.026	77.553	2	4.4152E-10	70690	160511_QHF_FH_JSI12i_1	142.07	128.3			0.86881	0.81229	15.222	4	2	Median	1.0433	0.87189	NaN	1	1	Median	0.6343	0.75678	NaN	1	1	Median	0.74194	0.73781	NaN	1	0	Median	1.0174	1.027	NaN	1	0	Median	537670000	286650000	251020000	145350000	64373000	80973000	131590000	79671000	51923000	130470000	71961000	58508000	130260000	70645000	59616000	38083	5495	35820	233575;233576;233577;233578;233579;233580	313984;313985;313986;313987;313988;313989;313990;313991;313992	313988			9	
NDLSICGTLHSVDQYLNIK	1	Unmodified	2189.0787	0.078667612	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	99.784	99.634	3	6.535E-07	87340	160511_QHF_FH_JSI11i_2	97.32	78.284			0.7255	0.71507	18.809	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.84256	1.0412	NaN	1	1	Median	0.72153	0.71507	NaN	1	0	Median	0.80595	0.87648	NaN	1	1	Median	65544000	35214000	30330000	0	0	0	14406000	7745100	6660900	26207000	14628000	11579000	24931000	12841000	12090000	38084	5558	35821	233581;233582;233583;233584	313993;313994;313995;313996;313997	313996			5	
NDLSPASSGNAVYDFFIGR	0	Unmodified	2028.9541	0.95411902	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								3	2	2	2	99.876	99.756	2	2.9049E-42	87545	160511_QHF_FH_JSI11i_2	204.37	198.72			1.1359	1.1915	12.375	6	0	Median	1.1618	1.004	NaN	1	0	Median	0.86892	1.0059	NaN	1	0	Median	1.3284	1.3217	0.073722	2	0	Median	1.1104	1.1915	0.60303	2	0	Median	239340000	114960000	124380000	45290000	21089000	24201000	39054000	21803000	17251000	75589000	34640000	40950000	79410000	37432000	41978000	38085	2571	35822	233585;233586;233587;233588;233589;233590;233591;233592;233593	313998;313999;314000;314001;314002;314003;314004;314005;314006;314007;314008;314009;314010;314011;314012	314012			15	
NDLSPTTVMSEGAR	0	Unmodified	1476.6879	0.68785692	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.81	4	4				3	2			1	5	3	4	52.832	48.438	2	8.384E-10	42646	160511_QHF_FH_JSI10i_2	106.01	89.375			0.94355	0.93703	10.925	9	7	Median	1.2578	0.99755	NaN	1	0	Median	0.91754	1.0969	12.917	3	3	Plateau	0.94944	0.92977	1.1001	2	1	Median	1.0842	1.1533	15.307	3	3	Plateau	3659000000	1794700000	1864300000	985010000	392840000	592170000	856310000	476570000	379740000	915100000	491910000	423180000	902610000	433420000	469200000	38086	1334	35823	233594;233595;233596;233597;233598;233599;233600;233601;233602;233603;233604;233605;233606	314013;314014;314015;314016;314017;314018;314019;314020;314021;314022;314023;314024;314025;314026	314026			14	
NDLSPTTVMSEGAR	0	Oxidation (M)	1492.6828	0.68277155	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.66	3					6				1	3	2	3	35.476	29.366	2	0.00057794	17102	160513_QHF_FH_JSI11Kac_3	81.92	57.576			0.9604	1.0202	10.319	9	3	Median	1.085	0.92113	NaN	1	1	Median	0.89473	1.0202	5.2092	3	1	Plateau	0.96648	0.94583	2.6729	2	0	Median	0.80366	0.82112	15.236	3	1	Plateau	112410000	62071000	50334000	27639000	11094000	16545000	38826000	25696000	13130000	7801700	3586600	4215100	38138000	21694000	16444000	38087	1334	35823	233607;233608;233609;233610;233611;233612;233613;233614;233615	314027;314028;314029;314030;314031;314032;314033;314034;314035;314036;314037;314038;314039	314029		978	13	
NDLYYNTITNFSEK	1	Unmodified	1720.7944	0.79443049	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	4	2	69.632	69.076	2	9.766E-10	61268	160511_QHF_FH_JSI10i_2	104.32	79.107			0.93209	0.93852	20.76	9	9	Median	1.1929	0.98544	6.8984	2	2	Median	0.68988	0.80549	38.568	2	2	Median	0.93209	0.91024	19.298	3	3	Median	0.89253	0.9395	24.005	2	2	Median	366140000	189890000	176250000	78633000	38529000	40103000	95868000	56332000	39536000	116840000	61057000	55787000	74793000	33973000	40821000	38088	2540	35824	233616;233617;233618;233619;233620;233621;233622;233623;233624;233625;233626;233627	314040;314041;314042;314043;314044;314045;314046;314047;314048;314049;314050;314051	314051			12	
NDMDEPPSGDFGGDEEK	1	Unmodified	1837.6949	0.69485237	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	38.74	38.296	2	2.9181E-12	33968	160511_QHF_FH_JSI9i_1	115.78	114.67			1.0325	1.0218	19.412	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2216	1.1722	NaN	1	0	Median	0.87261	0.89076	NaN	1	0	Median	57524000	27127000	30398000	0	0	0	0	0	0	33153000	14818000	18336000	24371000	12309000	12062000	38089	2578	35825	233628;233629;233630;233631;233632	314052;314053;314054;314055;314056;314057	314057			6	
NDMEQMK	1	Unmodified	894.35754	0.357538	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.583	10.2	2	0.048361	8115	160511_QHF_FH_JSI12i_1	43.246	22.964			1.8949	1.9365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8949	1.9365	NaN	1	0	Median	68267000	24695000	43572000	0	0	0	0	0	0	0	0	0	68267000	24695000	43572000	38090	2140	35826	233633	314058	314058			1	
NDMTYNYANR	0	Unmodified	1260.5193	0.51933503	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.688	23.161	2	0.04939	20455	160511_QHF_FH_JSI12i_1	43.308	36.867			1.3431	1.3224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3431	1.3224	NaN	1	1	Median	11078000	3583900	7494100	0	0	0	0	0	0	0	0	0	11078000	3583900	7494100	38091	167	35827	233634	314059	314059			1	
NDMVELLGPRPFAEK	1	Unmodified	1714.8712	0.87124102	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							4	2	3	2	73.283	72.729	2;3	2.0628E-10	64141	160511_QHF_FH_JSI9i_2	102.66	81.432			1.0052	1.0094	12.22	9	4	Median	1.0999	0.93848	13.746	2	2	Median	0.68247	0.83348	4.3047	2	1	Median	1.0052	1.0094	12.134	3	1	Median	1.0553	1.0604	5.7308	2	0	Median	792990000	387570000	405420000	184180000	83958000	100230000	156020000	96884000	59138000	299950000	132230000	167710000	152830000	74493000	78341000	38092	5640	35828	233635;233636;233637;233638;233639;233640;233641;233642;233643;233644;233645	314060;314061;314062;314063;314064;314065;314066;314067;314068;314069;314070;314071;314072;314073	314064			14	
NDNQILSEIVEAK	1	Unmodified	1471.7518	0.75183739	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	74.857	74.341	2	7.3095E-05	67517	160511_QHF_FH_JSI11i_1	101.89	92.456			0.78168	0.76658	47.581	7	6	Median	0.80426	0.64674	56.569	2	2	Median	0.87431	1.0145	69.504	2	2	Median	0.78168	0.7301	NaN	1	0	Median	1.0387	1.0669	46.754	2	2	Median	323500000	164620000	158880000	82358000	44603000	37755000	76115000	47535000	28579000	70000000	29871000	40129000	95028000	42613000	52415000	38093	421	35829	233646;233647;233648;233649;233650;233651;233652	314074;314075;314076;314077;314078;314079;314080;314081	314074			8	
NDNTEAFYK	1	Unmodified	1100.4775	0.47745344	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.131	22.592	2	0.0016279	19288	160511_QHF_FH_JSI9i_1	68.224	53.073			0.723	1.0103	37.336	4	2	Linear	0.96513	0.79122	NaN	1	0	Median	1.1663	1.3446	NaN	1	1	Median	1.3719	1.2901	NaN	1	1	Median	0.61613	0.62809	NaN	1	0	Median	313000000	152370000	160630000	80804000	34618000	46186000	85385000	46663000	38723000	63453000	30033000	33420000	83355000	41058000	42296000	38094	2373	35830	233653;233654;233655;233656	314082;314083;314084;314085;314086	314085			5	
NDPEITINVPQSSK	1	Unmodified	1540.7733	0.77330111	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	51.603	50.992	2	5.4516E-05	46097	160511_QHF_FH_JSI11i_1	75.479	60.788			1.1647	1.145	31.059	4	2	Median	1.1006	0.9369	NaN	1	0	Median	0.93291	1.061	39.151	2	2	Median	1.5951	1.5331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111960000	53471000	58490000	27941000	12273000	15668000	50768000	26401000	24368000	33252000	14798000	18455000	0	0	0	38095	2402	35831	233657;233658;233659;233660;233661;233662	314087;314088;314089;314090;314091;314092;314093	314088			7	
NDPFTSDPFTK	1	Unmodified	1267.5721	0.57208211	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.071	59.427	2	0.0073282	54012	160511_QHF_FH_JSI12i_1	51.092	41.138			1.1572	1.2152	13.549	4	0	Linear	1.4701	1.1828	NaN	1	0	Median	1.2957	1.5044	NaN	1	0	Median	1.1306	1.0942	NaN	1	0	Median	1.1981	1.2485	NaN	1	0	Median	283320000	123980000	159340000	60373000	21582000	38791000	70610000	30868000	39742000	77006000	32703000	44303000	75334000	38828000	36506000	38096	5230	35832	233663;233664;233665;233666	314094;314095;314096	314095			3	
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	1	Unmodified	4384.1191	0.119116	2072	P68104	EEF1A1	Elongation factor 1-alpha 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	2	3	3	5	91.531	86.724	4;5;6	2.7638E-135	45089	160513_QHF_FH_JSI10Kac_6	279.87	271.1			1.3278	1.2505	27.853	11	3	Median	0.83576	0.71766	17.125	2	0	Median	0.83388	0.99852	10.37	3	2	Plateau	1.5945	1.5232	NaN	1	1	Median	1.3695	1.3828	7.5092	5	0	Median	1943600000	868220000	1075400000	290820000	158360000	132460000	816580000	427430000	389150000	226390000	31146000	195240000	609810000	251280000	358530000	38097	2072	35833	233667;233668;233669;233670;233671;233672;233673;233674;233675;233676;233677;233678;233679	314097;314098;314099;314100;314101;314102;314103;314104;314105;314106;314107;314108;314109;314110;314111;314112;314113;314114;314115	314115			19	
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	1	Oxidation (M)	4400.114	0.11403062	2072	P68104	EEF1A1	Elongation factor 1-alpha 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				83.665	75.047	5	0.028564	41129	160513_QHF_FH_JSI9Kac_6	42.015	37.082			0.41986	0.35479	NaN	1	0	Median	0.41986	0.35479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60220000	39740000	20480000	60220000	39740000	20480000	0	0	0	0	0	0	0	0	0	38098	2072	35833	233680	314116	314116			1	
NDPQLSLISAMIK	1	Unmodified	1428.7647	0.76465068	3883	Q92783	STAM	Signal transducing adapter molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								1	2	3	3	94.591	94.264	2	0.00020454	82774	160511_QHF_FH_JSI11i_2	80.318	63.647			0.82915	0.91491	39.801	9	6	Median	0.91087	0.80557	NaN	1	1	Median	0.59743	0.70079	51.913	2	1	Median	1.011	1.0068	33.394	3	2	Median	0.80482	0.91491	54.283	3	2	Median	264750000	139140000	125600000	30689000	14218000	16471000	61462000	36836000	24626000	92905000	46234000	46672000	79692000	41857000	37835000	38099	3883	35834	233681;233682;233683;233684;233685;233686;233687;233688;233689	314117;314118;314119;314120;314121;314122;314123;314124;314125;314126;314127	314125			11	
NDPQSITADDLHQLLVVAR	0	Unmodified	2104.0913	0.091281208	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	88.618	88.259	2;3	4.811E-05	80411	160511_QHF_FH_JSI11i_1	64.249	58.821			0.97442	0.93474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97442	0.93474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36049000	17190000	18859000	0	0	0	0	0	0	36049000	17190000	18859000	0	0	0	38100	4416	35835	233690;233691	314128;314129;314130	314129			3	
NDPSLPEPK	1	Unmodified	995.49238	0.49237523	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	30.188	26.861	2	0.0006826	23810	160511_QHF_FH_JSI12i_1	76.1	58.86			0.92088	0.97369	5.6866	6	1	Median	1.0982	0.89251	NaN	1	1	Median	0.86328	1.0214	2.9213	2	0	Median	1.002	0.97955	4.8599	2	0	Median	0.88119	0.9476	NaN	1	0	Median	1629000000	843140000	785880000	390110000	186210000	203900000	466010000	261750000	204250000	387100000	184060000	203040000	385810000	211120000	174690000	38101	375	35836	233692;233693;233694;233695;233696;233697	314131;314132;314133;314134;314135;314136;314137;314138;314139	314133			9	
NDQANYSLNTDDPLIFK	1	Unmodified	1966.9272	0.92723557	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	77.642	77.083	2;3	3.4055E-08	69840	160511_QHF_FH_JSI10i_1	167.98	145.07			0.95628	1.0219	10.607	5	2	Median	1.2689	1.032	13.603	2	1	Median	0.94353	1.0987	NaN	1	0	Median	0.91523	0.88204	NaN	1	0	Median	0.95628	1.0219	NaN	1	1	Median	200290000	100080000	100220000	61694000	28962000	32732000	50765000	21840000	28925000	48235000	26707000	21528000	39599000	22567000	17032000	38102	777	35837	233698;233699;233700;233701;233702	314140;314141;314142;314143;314144;314145;314146;314147;314148	314142			9	
NDQDTWDYTNPNLSGQGDPGSNPNK	1	Unmodified	2733.1539	0.15389406	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	53.599	52.935	2;3	3.969E-34	47971	160511_QHF_FH_JSI12i_1	219.95	219.95			0.9781	0.97317	13.305	8	0	Median	1.0602	0.87777	13.811	2	0	Median	0.93557	1.0971	8.3309	2	0	Median	1.0316	0.99519	2.3859	2	0	Median	0.79116	0.82566	1.1369	2	0	Median	1156000000	588270000	567750000	211800000	96775000	115030000	348380000	165430000	182950000	254590000	124720000	129870000	341250000	201350000	139900000	38103	1063	35838	233703;233704;233705;233706;233707;233708;233709;233710	314149;314150;314151;314152;314153;314154;314155;314156;314157;314158;314159;314160;314161;314162;314163;314164;314165;314166;314167;314168;314169;314170;314171	314159			23	
NDQDTWDYTNPNLSGQGDPGSNPNKR	1	Unmodified	2889.255	0.25500509	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	47.825	47.162	3	0.016037	42781	160511_QHF_FH_JSI12i_1	25.485	23.232			1.8475	1.978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8475	1.978	NaN	1	0	Median	44216000	17525000	26691000	0	0	0	0	0	0	0	0	0	44216000	17525000	26691000	38104	1063	35839	233711	314172	314172			1	
NDRDVLGISDTLIR	0	Unmodified	1585.8424	0.84238373	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	68.934	68.036	2;3	9.3545E-05	60384	160511_QHF_FH_JSI10i_2	87.824	78.291			1.0013	1.1401	21.738	6	3	Median	NaN	NaN	NaN	0	0	Median	1.0895	1.3392	9.9298	2	2	Median	1.0317	1.063	14.112	2	1	Median	0.82413	0.92337	25.609	2	0	Median	466410000	234000000	232410000	0	0	0	145740000	68066000	77671000	178860000	79237000	99623000	141810000	86698000	55114000	38105	1397	35840	233712;233713;233714;233715;233716;233717	314173;314174;314175;314176;314177	314177			5	
NDRLWFK	1	Unmodified	977.5083	0.50830006	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	37.919	37.837	3	0.015	32223	160511_QHF_FH_JSI12i_3	48.504	37.63			1.6776	1.6317	1.0954	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7364	1.6444	NaN	1	1	Median	1.6209	1.6191	NaN	1	1	Median	110480000	50652000	59824000	0	0	0	0	0	0	57047000	25344000	31703000	53429000	25307000	28121000	38106	1943	35841	233718;233719	314178;314179	314179			2	
NDSDFEAK	1	Unmodified	924.38249	0.38249043	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	10.696	10.386	2	0.017783	8144	160511_QHF_FH_JSI10i_1	48.283	36.378			1.3639	1.5009	17.452	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1266	1.3266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6513	1.698	NaN	1	0	Median	161210000	78784000	82424000	0	0	0	89339000	47362000	41976000	0	0	0	71870000	31422000	40448000	38107	2950	35842	233720;233721	314180	314180			1	
NDSDPTYGQQGHPNTWK	1	Unmodified	1943.8398	0.83981755	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.495	24.142	3	0.0098629	20140	160511_QHF_FH_JSI11i_2	40.52	35.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38108	3927	35843	233722	314181	314181			1	
NDSFFTPDSNHNSLSQSTTGHLSLPQK	1	Unmodified	2958.3744	0.37439194	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	3	2	63.847	63.3	3;4	3.3321E-16	56139	160511_QHF_FH_JSI11i_3	112.23	106.45			1.2027	1.0866	46.361	8	3	Median	1.2534	1.0854	7.7744	2	1	Median	0.82457	0.99514	4.8051	2	0	Median	1.4115	1.3292	84.971	3	2	Median	1.2443	1.2778	NaN	1	0	Median	304980000	153320000	151660000	41888000	17862000	24026000	83102000	43273000	39829000	80240000	37206000	43034000	99752000	54982000	44771000	38109	2984	35844	233723;233724;233725;233726;233727;233728;233729;233730;233731	314182;314183;314184;314185;314186;314187;314188;314189;314190;314191	314182			10	
NDSLAGVVIADNEYPSR	0	Unmodified	1818.8748	0.87480607	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	65.057	64.477	2;3	1.9194E-09	58504	160511_QHF_FH_JSI11i_1	169.04	156.27			0.82208	0.94268	35.71	5	1	Median	1.2605	1.0264	NaN	1	0	Median	0.78636	0.94268	NaN	1	0	Median	0.67148	0.64836	57.357	2	1	Median	0.82208	0.85504	NaN	1	0	Median	253880000	137070000	116810000	55066000	20345000	34720000	64458000	31420000	33038000	70482000	44242000	26240000	63871000	41059000	22812000	38110	295	35845	233732;233733;233734;233735;233736	314192;314193;314194;314195;314196;314197;314198	314193			7	
NDSMSTTR	0	Unmodified	910.38144	0.38144457	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		5.6052	-1.7198	2	0.03768	1940	160513_QHF_FH_JSI11Kac_3	47.198	36.784			0.91844	0.97994	3.912	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80353	0.9532	NaN	1	0	Median	1.0498	1.0074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9796800	5573700	4223000	0	0	0	2810000	1733500	1076500	6986700	3840300	3146500	0	0	0	38111	3343	35846	233737;233738	314199	314199			1	
NDSPTQIPVSSDVCR	0	Unmodified	1673.7679	0.76789816	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	42.976	42.339	2	6.8039E-05	38517	160511_QHF_FH_JSI12i_1	74.987	67.725			1.6367	1.713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6367	1.713	NaN	1	1	Median	20319000	6777300	13541000	0	0	0	0	0	0	0	0	0	20319000	6777300	13541000	38112	3699	35847	233739;233740	314200;314201	314201			2	
NDSQHLFIEPR	0	Unmodified	1354.663	0.6629628	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	38.416	37.293	2;3	0.00014039	31799	160511_QHF_FH_JSI11i_2	89.403	71.092			0.69118	1.3381	39.196	3	3	Plateau	1.7089	1.4822	NaN	1	1	Median	0.62987	0.77567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69118	0.73133	NaN	1	1	Median	111920000	45280000	66636000	78735000	24519000	54216000	20017000	13499000	6517900	0	0	0	13164000	7261900	5902400	38113	3736	35848	233741;233742;233743;233744	314202;314203;314204;314205	314204			4	
NDSVIVADQTPTPTR	0	Unmodified	1612.8057	0.80566387	1075	P15336	ATF2	Cyclic AMP-dependent transcription factor ATF-2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	39.221	38.616	2	1.0306E-11	35014	160511_QHF_FH_JSI12i_1	110.29	75.406			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38114	1075	35849	233745;233746	314206;314207	314206			2	
NDSVVAGGGAIEMELSK	1	Oxidation (M)	1691.8036	0.80361496	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	60.478	59.874	2	1.262E-06	54119	160511_QHF_FH_JSI11i_1	91.441	70.584			0.99769	1.0205	6.1082	6	3	Median	1.3659	1.0804	NaN	1	0	Median	0.8563	1.0038	0.80582	2	2	Median	1.1998	1.1717	NaN	1	0	Median	0.99769	1.0205	0.95974	2	1	Median	176370000	97204000	79166000	26105000	11767000	14338000	43065000	29192000	13873000	43595000	22571000	21024000	63606000	33674000	29932000	38115	4321	35850	233747;233748;233749;233750;233751;233752;233753;233754	314208;314209;314210;314211;314212;314213;314214;314215;314216;314217	314210		2449	10	
NDSVVAGGGAIEMELSK	1	Unmodified	1675.8087	0.80870034	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	1	2	66.474	65.688	2	8.6654E-16	60028	160511_QHF_FH_JSI12i_1	192.54	170.97			1.3263	1.181	28.75	6	6	Median	1.3656	1.1057	10.625	2	2	Median	0.99824	1.1702	NaN	1	1	Median	1.3836	1.3379	NaN	1	1	Median	1.3637	1.4759	55.59	2	2	Median	1200300000	546360000	653910000	358700000	148610000	210090000	359260000	185810000	173450000	211400000	98958000	112440000	270910000	112980000	157930000	38116	4321	35850	233755;233756;233757;233758;233759;233760	314218;314219;314220;314221;314222;314223;314224;314225;314226	314221			9	
NDSYTLHK	1	Unmodified	976.46141	0.46140945	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		10.859	10.477	2	0.0073196	7985	160511_QHF_FH_JSI11i_2	69.423	50.641			1.0212	0.95585	10.72	2	2	Median	1.0454	0.88607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99754	1.0311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	153630000	61065000	92569000	60945000	20818000	40127000	0	0	0	92689000	40247000	52442000	0	0	0	38117	1984	35851	233761;233762	314227;314228	314228			2	
NDTGFQEGYPYPYPHTLYLLDK	1	Unmodified	2630.2329	0.23291965	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.405	88.816	3	1.5163E-06	78143	160511_QHF_FH_JSI11i_2	70.358	64.063			1.1701	1.1917	6.6606	4	0	Median	1.2415	1.0722	NaN	1	0	Median	0.94435	1.155	NaN	1	0	Median	1.2263	1.2364	NaN	1	0	Median	1.1165	1.2297	NaN	1	0	Median	209210000	89681000	119530000	45220000	15164000	30056000	45075000	24334000	20740000	63239000	22426000	40813000	55680000	27757000	27923000	38118	4558	35852	233763;233764;233765;233766	314229;314230;314231;314232	314231			4	
NDTSGEYKK	2	Unmodified	1040.4775	0.47745344	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	3.26	7	6					1			2	4	5	3	4.8598	4.0238	2;3	0.00010274	2432	160511_QHF_FH_JSI11i_1	93.649	76.873			0.83376	0.89544	28.584	14	1	Median	1.4659	1.2304	43.693	2	0	Median	0.75056	0.88938	22.015	4	1	Median	1.0524	1.0234	35.921	5	0	Median	0.76271	0.8503	5.11	3	0	Median	2790800000	1348300000	1442500000	322990000	113330000	209660000	723670000	415270000	308400000	1036700000	480280000	556410000	707450000	339430000	368020000	38119	891	35853	233767;233768;233769;233770;233771;233772;233773;233774;233775;233776;233777;233778;233779;233780	314233;314234;314235;314236;314237;314238;314239;314240;314241;314242;314243	314233			11	
NDTSGEYKK	2	Acetyl (K)	1082.488	0.48801813	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4					2	2	2	11.385	4.1133	2	0.0098569	4745	160513_QHF_FH_JSI11Kac_3	75.378	50.455			0.98692	1.0642	165.33	5	2	Median	NaN	NaN	NaN	0	0	Median	0.97019	1.1203	42.94	2	0	Median	6.6217	6.3413	NaN	1	1	Median	0.2412	0.26534	196.44	2	1	Median	15923000	10344000	5579100	0	0	0	4717100	2510500	2206600	5398300	3767900	1630400	5807400	4065400	1742000	38120	891	35853	233781;233782;233783;233784;233785;233786	314244;314245;314246;314247;314248	314244	628		5	
NDVLDSLGISPDLLPEDFVR	0	Unmodified	2213.1216	0.12157828	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	102.25	102.18	2	3.8953E-44	92920	160511_QHF_FH_JSI11i_1	206.95	162.34			1.1662	1.2857	11.779	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1862	1.4241	0.07988	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1153	1.1613	NaN	1	0	Median	341070000	169740000	171330000	0	0	0	188080000	91023000	97054000	0	0	0	152990000	78718000	74275000	38121	5233	35854	233787;233788;233789;233790	314249;314250;314251	314249			3	
NDVLPLSNSVPEDVGK	1	Unmodified	1681.8523	0.85227972	4054	Q96EQ0	SGTB	Small glutamine-rich tetratricopeptide repeat-containing protein beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	66.968	66.345	2	4.8473E-11	60435	160511_QHF_FH_JSI12i_1	104.17	93.803			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38122	4054	35855	233791	314252	314252			1	
NDVMIRK	1	Unmodified	874.46947	0.46947171	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	11.113	10.762	2	0.0082893	8128	160511_QHF_FH_JSI11i_2	84.699	44.937			0.64698	0.60563	78.55	4	2	Median	0.49833	0.42284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83997	0.86743	NaN	1	0	Median	0.65604	0.69636	125.44	2	1	Median	821290000	447580000	373710000	200300000	91868000	108430000	0	0	0	420040000	249040000	171000000	200950000	106670000	94286000	38123	1952;3963	35856	233792;233793;233794;233795	314253;314254;314255;314256;314257	314255			5	
NDVMNLLESAGFSR	0	Unmodified	1551.7351	0.73514147	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.833	96.587	2	1.3411E-09	84677	160511_QHF_FH_JSI11i_2	142.91	118.12			1.2723	1.7211	20.77	4	0	Linear	1.246	1.0668	NaN	1	0	Median	1.2992	1.5551	NaN	1	0	Median	1.1785	1.1665	NaN	1	0	Median	1.4824	1.6209	NaN	1	0	Median	192310000	82907000	109400000	37474000	22177000	15297000	50576000	20449000	30127000	42482000	16253000	26228000	61774000	24028000	37746000	38124	5479	35857	233796;233797;233798;233799	314258;314259;314260;314261;314262;314263;314264;314265	314262			8	
NDVNVEFSEK	1	Unmodified	1179.5408	0.54078198	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	35.988	32.611	2	0.00068153	28894	160511_QHF_FH_JSI10i_1	70.412	51.317			1.0263	1.0247	39.568	6	4	Median	1.2366	1.0188	NaN	1	0	Median	1.0913	1.2949	NaN	1	0	Median	1.1976	1.1636	83.493	2	2	Median	0.88202	0.95922	10.161	2	2	Median	539070000	215700000	323370000	111960000	47947000	64009000	174200000	78711000	95485000	144510000	45386000	99124000	108410000	43658000	64750000	38125	5548	35858	233800;233801;233802;233803;233804;233805	314266;314267;314268;314269;314270;314271;314272;314273	314270			8	
NDVNWSQPGEK	1	Unmodified	1272.5735	0.57347909	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	26.351	25.926	2	2.9518E-06	22748	160511_QHF_FH_JSI10i_1	117.52	108.31			2.6716	2.9176	48.323	2	2	Median	NaN	NaN	NaN	0	0	Median	3.4858	4.106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0475	2.0731	NaN	1	1	Median	439140000	108430000	330720000	0	0	0	255670000	60430000	195240000	0	0	0	183470000	47997000	135470000	38126	2425	35859	233806;233807	314274;314275	314275			2	
NDVVGTTYLHLSK	1	Unmodified	1445.7514	0.75144346	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	54.331	52.256	2;3	1.3505E-05	44852	160511_QHF_FH_JSI12i_2	100.11	93.383			1.0219	1.0274	24.497	9	2	Median	1.133	0.99296	15.172	2	0	Median	0.70687	0.86173	33.741	2	1	Median	1.1833	1.2067	22.131	3	1	Median	0.79129	0.86868	9.016	2	0	Median	769960000	386990000	382970000	170860000	78591000	92273000	178510000	105480000	73037000	223240000	99214000	124030000	197350000	103710000	93635000	38127	5161	35860	233808;233809;233810;233811;233812;233813;233814;233815;233816	314276;314277;314278;314279;314280;314281	314277			6	
NDWHGGAIVSALSQTGSLFK	1	Unmodified	2087.0436	0.043602734	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	96.775	96.791	2;3	5.5354E-07	84063	160511_QHF_FH_JSI12i_3	94.463	71.479			0.98536	0.9737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98536	0.9737	NaN	1	0	Median	221980000	110200000	111770000	0	0	0	0	0	0	0	0	0	221980000	110200000	111770000	38128	1733	35861	233817;233818	314282;314283;314284;314285;314286	314284			5	
NDYAVESYENK	1	Unmodified	1330.5677	0.56772501	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3.4	4.8	4					1						3	2	30.266	28.162	2	2.6873E-05	25318	160511_QHF_FH_JSI12i_1	134.57	125.38			0.50439	0.52286	52.682	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1364	1.119	48.173	2	2	Median	0.95889	1.0115	76.835	2	2	Median	122250000	63513000	58734000	0	0	0	0	0	0	56590000	29016000	27573000	65657000	34497000	31161000	38129	4572	35862	233819;233820;233821;233822;233823	314287;314288;314289;314290;314291	314290			5	
NDYDQLQK	1	Unmodified	1022.4669	0.46688876	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.66	2					1						1	2	18.757	16.202	2	0.0014643	13980	160511_QHF_FH_JSI12i_1	89.142	76.105			1.1052	1.0664	28.364	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1052	1.0664	NaN	1	0	Median	1.2095	1.2844	37.127	2	0	Median	418860000	177130000	241730000	0	0	0	0	0	0	215440000	79495000	135940000	203420000	97637000	105780000	38130	1085	35863	233824;233825;233826	314292;314293;314294;314295	314293			4	
NDYDQLQKAR	1	Acetyl (K)	1291.6157	0.61567826	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	36.364	27.428	2	0.011732	16077	160513_QHF_FH_JSI11Kac_3	65.347	53.633			0.04357	0.041343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.04357	0.041343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1982700	1831600	151180	0	0	0	0	0	0	1982700	1831600	151180	0	0	0	38131	1085	35864	233827;233828	314296;314297	314296	940		2	
NDYEARPQYYK	1	Unmodified	1445.6575	0.65754307	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	22.213	21.407	3	0.0032432	18277	160511_QHF_FH_JSI10i_2	57.836	50.112			0.8627	0.96954	10.194	4	3	Median	NaN	NaN	NaN	0	0	Median	0.73743	0.90008	1.9766	2	2	Median	1.0291	1.0299	NaN	1	1	Median	0.99351	1.1024	NaN	1	0	Median	221420000	108540000	112890000	0	0	0	86711000	44160000	42551000	106380000	50436000	55947000	28330000	13940000	14391000	38132	432	35865	233829;233830;233831;233832	314298;314299;314300;314301	314300			3	
NDYLPLYSSSTK	1	Unmodified	1386.6667	0.66671078	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				54.949	53.772	2	0.0084405	47863	160511_QHF_FH_JSI9i_1	59.198	46.985			1.0243	0.83687	NaN	1	1	Median	1.0243	0.83687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26938000	10910000	16028000	26938000	10910000	16028000	0	0	0	0	0	0	0	0	0	38133	5482	35866	233833	314302	314302			1	
NEAGIVSCTAR	0	Unmodified	1176.5557	0.55572054	3805;3306	Q86TC9;Q8WX93	MYPN;PALLD	Myopalladin;Palladin	no	no	0	0	0	0			By MS/MS	By MS/MS	5.33	6.13	2						1					2	1	22.252	19.428	2	0.0060794	16906	160511_QHF_FH_JSI12i_1	62.408	29.567			0.58872	0.6034	73.196	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73424	0.72705	99.871	2	2	Median	0.94892	1.0147	NaN	1	1	Median	80305000	49545000	30760000	0	0	0	0	0	0	43919000	29727000	14192000	36386000	19818000	16568000	38134	3306;3805	35867	233834;233835;233836	314303;314304;314305	314304			3	
NEALAALLR	0	Unmodified	969.56073	0.56072956	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.4		8	2					3		4	4	3	2	64.557	63.534	2	0.00069397	55000	160511_QHF_FH_JSI11i_2	86.67	57.294			0.29964	0.29558	216.21	10	10	Median	0.31747	0.26244	201.78	3	3	Median	0.2828	0.33289	206.26	3	3	Median	1.4172	1.4299	375.09	2	2	Median	0.95047	1.0621	316.5	2	2	Median	1176100000	542440000	633640000	268720000	120920000	147800000	285420000	152490000	132930000	424720000	170880000	253830000	197230000	98151000	99083000	38135	1039	35868	233837;233838;233839;233840;233841;233842;233843;233844;233845;233846;233847;233848;233849	314306;314307;314308;314309;314310;314311;314312;314313;314314;314315;314316;314317;314318;314319;314320;314321;314322	314315			17	
NEANGRETTEVDLLTK	1	Unmodified	1788.8854	0.88537076	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.851	39.89	3	0.00031762	34197	160511_QHF_FH_JSI12i_2	63.134	51.864			0.902	1.0551	17.431	4	0	Linear	0.90079	0.75875	NaN	1	0	Median	0.64116	0.78924	NaN	1	0	Median	0.90321	0.92069	NaN	1	0	Median	0.98772	1.1136	NaN	1	0	Median	212520000	102380000	110150000	40224000	17569000	22656000	48782000	30857000	17926000	58961000	23216000	35745000	64556000	30737000	33819000	38136	5279	35869	233850;233851;233852;233853	314323;314324;314325;314326	314324			4	
NEAPEGNLGDFAEFQR	0	Unmodified	1792.8016	0.80164113	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	2	1	66.406	65.838	2	4.196E-07	58507	160511_QHF_FH_JSI9i_1	90.412	75.536			2.1726	1.7773	36.6	5	5	Median	2.1726	1.7773	NaN	1	1	Median	2.8766	3.3672	NaN	1	1	Median	2.0685	1.9961	32.871	2	2	Median	1.3244	1.3711	NaN	1	1	Median	639150000	111720000	527430000	105080000	26592000	78492000	249690000	29021000	220660000	225680000	37731000	187950000	58701000	18379000	40321000	38137	5376	35870	233854;233855;233856;233857;233858;233859;233860	314327;314328;314329;314330;314331;314332;314333	314333			7	
NEATVETLTETK	1	Unmodified	1334.6565	0.65654002	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		46.127	36.781	2	0.00173	20608	160513_QHF_FH_JSI11Kac_3	77.64	59.776			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1429200	1429200	0	0	0	0	0	0	0	1429200	1429200	0	0	0	0	38138	4603	35871	233861	314334	314334			1	
NEAWLSEVEGK	1	Unmodified	1260.5986	0.59863121	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		60.664	60.231	2	0.0028716	54464	160511_QHF_FH_JSI10i_1	59.542	39.335			2.1554	2.1299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1554	2.1299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26614000	8096400	18518000	0	0	0	0	0	0	26614000	8096400	18518000	0	0	0	38139	2934	35872	233862;233863	314335;314336	314336			2	
NEDEEEEEEEKDEAEDLLGR	1	Unmodified	2405.983	0.98303171	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	57.814	57.288	3	5.4257E-07	51670	160511_QHF_FH_JSI10i_1	96.718	88.53			1.333	1.4976	39.644	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93439	1.1315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9018	1.9822	NaN	1	0	Median	155990000	53140000	102850000	0	0	0	80581000	33962000	46619000	0	0	0	75406000	19178000	56228000	38140	5658	35873	233864;233865	314337	314337			1	
NEDIPNVAVYPHNGMIDLK	1	Unmodified	2138.0466	0.046639202	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							3	3	2	3	75.182	74.503	2;3	6.1105E-07	64406	160511_QHF_FH_JSI12i_2	97.457	88.203			0.99558	1.0822	14.962	9	4	Median	1.1068	0.93564	20.584	2	1	Median	0.99558	1.1544	11.411	3	2	Median	0.99939	0.99188	20.928	2	0	Median	0.94465	1.0272	13.956	2	1	Median	1222700000	594240000	628450000	190650000	82599000	108050000	408910000	206650000	202270000	391370000	187840000	203530000	231750000	117150000	114590000	38141	1829	35874	233866;233867;233868;233869;233870;233871;233872;233873;233874;233875;233876	314338;314339;314340;314341;314342;314343;314344;314345;314346;314347;314348;314349;314350;314351;314352;314353;314354;314355;314356	314342			19	
NEDITEPQSILAAAEK	1	Unmodified	1727.8578	0.85775902	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	72.192	71.7	2;3	3.537E-16	64053	160511_QHF_FH_JSI9i_1	202.13	185.59			0.97899	0.96718	16.962	10	4	Median	1.2237	0.99965	9.848	2	0	Median	0.57933	0.67877	25.516	3	2	Plateau	0.97596	0.96708	2.1931	2	0	Median	1.1157	1.1674	12.672	3	2	Median	1777600000	852290000	925350000	379080000	159550000	219520000	438890000	263740000	175150000	369750000	198240000	171510000	589910000	230750000	359160000	38142	5526	35875	233877;233878;233879;233880;233881;233882;233883;233884;233885;233886	314357;314358;314359;314360;314361;314362;314363;314364;314365;314366;314367;314368;314369;314370;314371;314372;314373;314374;314375;314376;314377;314378;314379;314380	314378			24	
NEDLEEIASTDLK	1	Unmodified	1475.6991	0.69913312	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	64.199	63.691	2	3.6558E-05	57711	160511_QHF_FH_JSI10i_1	80.469	61.723			0.36333	0.35505	45.306	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55708	0.53954	59.181	2	2	Median	0.38326	0.3994	NaN	1	1	Median	147750000	91553000	56194000	0	0	0	0	0	0	101640000	59933000	41706000	46109000	31621000	14488000	38143	2082	35876	233887;233888;233889;233890	314381;314382;314383;314384	314384			4	
NEDLNAEDVYSR	0	Unmodified	1423.6216	0.6215515	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.161	35.553	2	1.0264E-06	31980	160511_QHF_FH_JSI11i_1	126.71	120.12			0.97394	1.0164	4.4919	4	0	Median	1.2577	1.0437	NaN	1	0	Median	0.92533	1.0666	NaN	1	0	Median	0.98984	0.96857	NaN	1	0	Median	0.95828	0.98985	NaN	1	0	Median	281400000	141240000	140160000	57652000	28241000	29411000	85499000	43992000	41507000	84291000	42764000	41527000	53961000	26246000	27715000	38144	2771	35877	233891;233892;233893;233894	314385;314386;314387;314388;314389;314390;314391	314386			7	
NEDNGAPENSVEK	1	Unmodified	1401.6008	0.60081606	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	11.422	10.968	2	5.8521E-05	8541	160511_QHF_FH_JSI11i_1	75.739	63.163			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38145	3206	35878	233895;233896;233897	314392;314393;314394	314392			3	
NEDVEALQQQQTR	0	Unmodified	1557.7383	0.73831259	2882	Q5EBL4	RILPL1	RILP-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		26.159	25.856	2	0.00086604	22714	160511_QHF_FH_JSI11i_1	82.705	63.351			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9557300	9557300	0	0	0	0	9557300	9557300	0	0	0	0	0	0	0	38146	2882	35879	233898;233899	314395;314396	314395			2	
NEDVQLR	0	Unmodified	872.43519	0.4351947	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.841	14.142	2	0.035052	11866	160511_QHF_FH_JSI12i_1	50.966	17.228			0.75579	0.70643	12.99	2	2	Median	0.93019	0.77439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61408	0.64443	NaN	1	1	Median	311400000	149710000	161690000	165270000	67075000	98195000	0	0	0	0	0	0	146130000	82639000	63495000	38147	1345;1346	35880	233900;233901	314397;314398	314397			2	
NEEDAAELVALAQAVNAR	0	Unmodified	1882.9385	0.93846896	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.494	8	11								5	4	6	4	94.164	93.797	2;3	1.6022E-117	85184	160511_QHF_FH_JSI11i_1	278.39	264.73			0.85221	0.90857	45.471	19	6	Median	1.0674	0.90857	51.507	5	2	Median	0.73443	0.87693	6.0856	4	0	Median	0.79846	0.78026	71.871	6	4	Median	0.90048	0.96966	10.045	4	0	Median	3133700000	1627300000	1506400000	551110000	279180000	271920000	939530000	571570000	367960000	907400000	456110000	451280000	735690000	320400000	415290000	38148	1208	35881	233902;233903;233904;233905;233906;233907;233908;233909;233910;233911;233912;233913;233914;233915;233916;233917;233918;233919;233920	314399;314400;314401;314402;314403;314404;314405;314406;314407;314408;314409;314410;314411;314412;314413;314414;314415;314416;314417;314418;314419;314420;314421;314422;314423;314424;314425;314426;314427;314428;314429;314430;314431;314432;314433;314434;314435;314436;314437;314438;314439;314440;314441;314442;314443;314444;314445	314403			47	
NEEDDMREMEEERLR	0	Unmodified	1979.8313	0.83130305	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	2		By MS/MS	By matching		2	0		2									1	1		39.481	38.772	4	0.032417	34039	160511_QHF_FH_JSI10i_2	28.956	27.859			1.0069	1.1484	10.956	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84599	1.0628	NaN	1	0	Median	1.1984	1.2409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81280000	37486000	43794000	0	0	0	41267000	19109000	22158000	40013000	18377000	21636000	0	0	0	38149	2195	35882	233921;233922	314446	314446			1	
NEEDEGHSNSSPR	0	Unmodified	1456.5815	0.5814776	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.15	4.64	9	2					2			2	2	4	5	4.7383	3.2375	2;3	2.5701E-15	2335	160511_QHF_FH_JSI10i_1	175.48	163.44			1.0189	0.96172	21.851	12	0	Median	1.0891	0.90438	5.5462	2	0	Median	1.272	1.5045	3.4704	2	0	Median	1.0394	1.0027	23.114	4	0	Median	0.89683	0.95713	4.3531	4	0	Median	5222700000	2424500000	2798200000	866790000	400740000	466050000	1472900000	621490000	851370000	1644000000	821880000	822160000	1239000000	580400000	658590000	38150	2488	35883	233923;233924;233925;233926;233927;233928;233929;233930;233931;233932;233933;233934;233935	314447;314448;314449;314450;314451;314452;314453;314454;314455;314456;314457;314458;314459;314460;314461;314462;314463	314456			16	
NEEEGNSEEIK	1	Unmodified	1276.5419	0.54190419	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	9.5618	9.2587	2	1.5618E-05	7222	160511_QHF_FH_JSI12i_1	105.4	90.246			0.98814	1.0813	36.132	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2049	1.3961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81036	0.83753	NaN	1	0	Median	75515000	38631000	36884000	0	0	0	27509000	11198000	16311000	0	0	0	48005000	27432000	20573000	38151	575	35884	233936;233937	314464	314464			1	
NEEENENSISQYK	1	Unmodified	1582.6747	0.67470928	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.16	22.621	2	9.1199E-17	19984	160511_QHF_FH_JSI12i_1	210.91	193.48			2.8064	3.0941	44.153	4	4	Median	2.3781	1.9497	NaN	1	1	Median	3.3118	4.0247	NaN	1	1	Median	5.127	5.0158	NaN	1	1	Median	2.2351	2.3786	NaN	1	1	Median	969430000	195430000	774000000	186100000	39110000	146990000	274610000	45214000	229390000	255840000	42599000	213240000	252880000	68501000	184380000	38152	2107	35885	233938;233939;233940;233941;233942	314465;314466;314467;314468;314469	314466			5	
NEEENIYSVPHDSTQGK	1	Unmodified	1945.8654	0.8653636	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	31.294	30.915	3	0.0017826	27572	160511_QHF_FH_JSI10i_1	43.955	34.167			1.3305	1.4292	19.601	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.1805	NaN	1	0	Median	1.7902	1.747	NaN	1	0	Median	1.3305	1.4292	NaN	1	1	Median	143390000	63926000	79465000	0	0	0	49864000	24499000	25366000	53626000	22858000	30768000	39900000	16569000	23331000	38153	4974	35886	233943;233944;233945	314470;314471	314471			2	
NEEEVFAWNNEVK	1	Unmodified	1606.7264	0.72635092	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	62.915	62.182	2	2.3494E-06	55273	160511_QHF_FH_JSI9i_1	121.04	97.665			1.2113	0.99628	35.39	5	4	Median	1.058	0.86717	19.628	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1584	1.1367	53.303	2	1	Median	1.3877	1.4265	NaN	1	1	Median	478870000	225960000	252910000	144660000	69385000	75276000	0	0	0	222650000	106590000	116060000	111560000	49983000	61576000	38154	1659	35887	233946;233947;233948;233949;233950	314472;314473;314474;314475;314476	314476			5	
NEEKPVQMMFK	2	Unmodified	1379.6577	0.65774277	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							3	2	3	4	41.66	40.716	2;3	0.00012971	35575	160511_QHF_FH_JSI9i_2	76.143	47.337			0.92696	0.96908	60.533	12	8	Median	1.977	1.6842	101.79	3	2	Plateau	0.89269	1.0986	17.107	2	1	Median	0.97344	0.9649	71.09	3	3	Median	0.75543	0.80648	45.04	4	2	Median	1433000000	739070000	693880000	232170000	114780000	117390000	215400000	116780000	98627000	499210000	255560000	243660000	486170000	251960000	234210000	38155	1425	35888	233951;233952;233953;233954;233955;233956;233957;233958;233959;233960;233961;233962	314477;314478;314479;314480;314481;314482;314483;314484;314485;314486;314487;314488;314489;314490;314491;314492;314493	314484			17	
NEELQGNDSK	1	Unmodified	1132.4996	0.49964545	5260	Q9UBW7	ZMYM2	Zinc finger MYM-type protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.5445	6.9021	2	0.0045337	4511	160511_QHF_FH_JSI9i_1	65.5	46.755			2.9417	2.3976	NaN	1	1	Median	2.9417	2.3976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14567000	2832900	11734000	14567000	2832900	11734000	0	0	0	0	0	0	0	0	0	38156	5260	35889	233963	314494	314494			1	
NEENTEPGAESSENADDPNK	1	Unmodified	2145.857	0.85704333	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	13.978	13.536	2;3	2.0309E-18	10910	160511_QHF_FH_JSI9i_1	204.52	202.39			0.98369	0.93791	31.019	8	2	Median	0.91504	0.76512	12.167	2	0	Median	1.3251	1.5446	28.644	2	1	Median	1.03	0.98091	8.0869	2	0	Median	0.8397	0.87595	11.414	2	1	Median	676240000	307980000	368270000	144290000	72418000	71868000	123980000	40376000	83607000	236880000	102050000	134830000	171090000	93129000	77966000	38157	1556	35890	233964;233965;233966;233967;233968;233969;233970;233971	314495;314496;314497;314498;314499;314500;314501;314502;314503;314504;314505;314506;314507	314505			13	
NEEPSEEEIDAPKPK	2	Unmodified	1710.7948	0.79482442	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.34	8					3				2	3	3	3	29.224	26.431	2;3	2.3325E-06	23142	160511_QHF_FH_JSI11i_1	126.77	116.14			0.83531	0.88252	8.4474	11	0	Median	0.99473	0.80664	0.12522	2	0	Median	0.78382	0.9344	3.2104	3	0	Plateau	0.96068	0.93176	8.4781	3	0	Median	0.83531	0.88007	12.561	3	0	Median	1884900000	969570000	915300000	450420000	228820000	221610000	496870000	258410000	238460000	420090000	204370000	215720000	517480000	277970000	239510000	38158	4940	35891	233972;233973;233974;233975;233976;233977;233978;233979;233980;233981;233982	314508;314509;314510;314511;314512;314513;314514;314515;314516;314517;314518;314519;314520;314521;314522;314523;314524;314525;314526	314509			19	
NEEPTTQEGK	1	Unmodified	1131.5044	0.50439648	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	6.1961	5.904	2	1.6464E-06	3950	160511_QHF_FH_JSI12i_1	119.75	42.689			2.5334	2.7943	34.348	2	2	Median	NaN	NaN	NaN	0	0	Median	3.0917	3.5625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.076	2.1918	NaN	1	1	Median	263590000	69849000	193740000	0	0	0	120560000	31557000	89006000	0	0	0	143020000	38292000	104730000	38159	2911	35892	233983;233984;233985	314527;314528;314529;314530	314528			4	
NEETLREEEEEK	1	Unmodified	1533.6795	0.67946031	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	1			By MS/MS		2	0		2										2		14.25	14.027	2;3	0.0014017	11099	160511_QHF_FH_JSI11i_2	63.76	52.498			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20141000	20141000	0	0	0	0	0	0	0	20141000	20141000	0	0	0	0	38160	2105	35893	233986;233987	314531;314532	314531			2	
NEEVLAVLGHELGHWK	1	Unmodified	1829.9424	0.94243213	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		10								1	3	2	4	95.217	94.816	3;4	0.00018928	83310	160511_QHF_FH_JSI10i_2	60.918	54.651			0.49745	0.52994	40.918	9	6	Median	1.1268	1.0506	NaN	1	0	Median	0.56989	0.68762	81.006	2	1	Median	0.50278	0.49147	9.6319	2	1	Median	0.48649	0.53399	29.609	4	4	Median	81024000	47548000	33476000	3296500	1400100	1896500	19523000	9662200	9860700	22483000	14184000	8298900	35722000	22302000	13421000	38161	575	35894	233988;233989;233990;233991;233992;233993;233994;233995;233996;233997	314533;314534;314535;314536;314537;314538;314539;314540;314541;314542	314539			10	
NEFIPTNFEILPLEK	1	Unmodified	1802.9455	0.94545182	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	101.5	101.38	2	4.5984E-21	89942	160511_QHF_FH_JSI10i_2	134.98	109.5			0.95562	0.99939	15.2	6	3	Median	1.4059	1.1951	NaN	1	0	Median	0.69879	0.82164	NaN	1	0	Median	0.92597	0.91914	11.559	2	1	Median	0.99082	1.0701	9.395	2	2	Median	1374000000	714800000	659190000	249560000	88502000	161050000	214220000	126630000	87591000	439480000	241200000	198290000	470730000	258470000	212260000	38162	1060	35895	233998;233999;234000;234001;234002;234003;234004	314543;314544;314545;314546;314547;314548;314549;314550	314550			8	
NEFITLAHVNPQSFPAPK	1	Unmodified	2009.0371	0.037060793	1724	P51003;Q9NRJ5	PAPOLA;PAPOLB	Poly(A) polymerase alpha;Poly(A) polymerase beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.937	77.109	3	2.4941E-07	67858	160511_QHF_FH_JSI11i_2	108.17	98.383			1.0111	1.089	2.7214	4	0	Median	1.265	1.0809	NaN	1	0	Median	0.90782	1.1134	NaN	1	0	Median	1.1093	1.0972	NaN	1	0	Median	0.92151	1.0449	NaN	1	0	Median	274730000	128920000	145820000	39060000	17790000	21269000	66119000	37187000	28933000	101470000	45343000	56130000	68081000	28596000	39485000	38163	1724	35896	234005;234006;234007;234008	314551;314552;314553;314554;314555;314556;314557;314558	314556			8	
NEFLLLHAFYENNYIVPDK	1	Unmodified	2338.1634	0.16338352	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			90.051	84.33	3	0.00012244	47959	160513_QHF_FH_JSI10Kac_6	103.26	89.808			0.71962	0.8633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71962	0.8633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40676000	27243000	13433000	0	0	0	40676000	27243000	13433000	0	0	0	0	0	0	38164	940	35897	234009	314559	314559			1	
NEFNLESK	1	Unmodified	979.46108	0.4610751	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	28.585	28	2	0.0022449	24263	160511_QHF_FH_JSI9i_1	81.548	35.83			1.2926	1.2472	73.279	5	4	Median	1.7004	1.4202	NaN	1	0	Median	0.74989	0.89154	NaN	1	1	Median	1.2926	1.2472	NaN	1	1	Median	1.7651	1.873	132.72	2	2	Median	1983800000	717360000	1266400000	332960000	93327000	239640000	439860000	203920000	235930000	510580000	178180000	332400000	700400000	241930000	458480000	38165	2009;2722	35898	234010;234011;234012;234013;234014	314560;314561;314562;314563;314564;314565	314564			6	
NEGGTWSVEK	1	Unmodified	1105.504	0.50400254	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	3	1	1	23.492	23.208	2	0.0014109	20252	160511_QHF_FH_JSI10i_1	70.552	36.365			2.5617	3.0394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5617	3.0394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	228820000	75992000	152830000	0	0	0	228820000	75992000	152830000	0	0	0	0	0	0	38166	2374	35899	234015;234016;234017;234018;234019;234020	314566;314567;314568;314569;314570;314571	314568			6	
NEGITALYSGLKPTMIR	1	Unmodified	1862.9924	0.99241879	5699	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	77.464	77.33	3	7.9475E-05	69038	160511_QHF_FH_JSI11i_3	72.184	59.693			0.87756	0.85151	23.819	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0923	1.0077	NaN	1	0	Median	0.70505	0.71952	NaN	1	1	Median	99897000	58688000	41209000	0	0	0	0	0	0	49129000	30632000	18497000	50768000	28056000	22712000	38167	5699	35900	234021;234022	314572;314573;314574	314573			3	
NEGNIFPNPEATFVK	1	Unmodified	1675.8206	0.82058566	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	2	2	1	76.06	75.454	2	1.3873E-14	68195	160511_QHF_FH_JSI10i_1	158.11	140.45			1.1254	1.0037	10.537	8	3	Median	1.2119	1.0475	6.5506	3	2	Median	0.77327	0.93896	3.3855	2	0	Median	1.0943	1.0657	20.328	2	1	Median	1.0727	1.1217	NaN	1	0	Median	1420900000	749910000	671040000	378250000	172510000	205740000	332880000	193720000	139160000	398320000	210070000	188250000	311490000	173610000	137890000	38168	5658	35901	234023;234024;234025;234026;234027;234028;234029;234030	314575;314576;314577;314578;314579;314580;314581;314582;314583;314584;314585;314586;314587;314588;314589;314590	314580			16	
NEGQDATMYCK	1	Unmodified	1315.5173	0.51728612	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	16.213	15.629	2	7.7398E-07	12923	160511_QHF_FH_JSI9i_1	119.68	100.59			1.5282	1.2714	27.376	3	2	Median	1.5282	1.2714	NaN	1	1	Median	0.8673	1.0328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.71	1.7768	NaN	1	0	Median	112910000	46638000	66276000	22624000	9005600	13618000	36950000	16207000	20743000	0	0	0	53340000	21425000	31915000	38169	5702	35902	234031;234032;234033	314591;314592;314593;314594	314594			4	
NEGSESAPEGQAQQR	0	Unmodified	1586.6921	0.69209068	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.34	7	4			3	3				3	5	4	5	8.6007	5.7776	2;3	2.1489E-98	5524	160511_QHF_FH_JSI12i_1	265.22	259.44			0.96385	0.98387	25.924	17	1	Median	1.0608	0.89717	33.427	3	1	Median	0.81422	0.96016	31.206	5	0	Median	1.089	1.0744	11.741	4	0	Median	0.96385	1.0342	21.144	5	0	Median	8042900000	4140600000	3902300000	1833800000	902890000	930880000	2354300000	1237400000	1116900000	1875100000	1016600000	858550000	1979700000	983730000	995960000	38170	2066	35903	234034;234035;234036;234037;234038;234039;234040;234041;234042;234043;234044;234045;234046;234047;234048;234049;234050	314595;314596;314597;314598;314599;314600;314601;314602;314603;314604;314605;314606;314607;314608;314609;314610;314611;314612;314613;314614;314615;314616;314617;314618;314619;314620;314621;314622;314623;314624	314601			30	
NEGTATYAAAVLFR	0	Unmodified	1482.7467	0.74669243	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.57	6.57		6						6	2	4	3	5	2	76.487	70.302	2;3	5.4224E-08	37633	160513_QHF_FH_JSI11Kac_6	136.27	111.42			1.0467	1.0022	30.336	14	5	Median	1.0467	0.89644	25.305	4	2	Median	0.89818	1.0632	30.985	3	0	Median	0.96392	0.94478	15.641	5	2	Median	1.6995	1.9068	14.667	2	1	Median	586430000	220850000	365580000	77292000	34227000	43065000	42691000	22100000	20591000	137240000	71216000	66019000	329210000	93303000	235910000	38171	1065	35904	234051;234052;234053;234054;234055;234056;234057;234058;234059;234060;234061;234062;234063;234064	314625;314626;314627;314628;314629;314630;314631;314632;314633;314634;314635;314636;314637;314638;314639;314640;314641;314642;314643;314644;314645	314632			21	
NEGVATYAAAVLFR	0	Unmodified	1480.7674	0.76742787	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								2		1		89.557	89.108	2	0.00066941	78537	160511_QHF_FH_JSI9i_2	89.548	75.39			2.5986	2.6215	138.89	3	3	Median	1.2305	1.0604	181.99	2	2	Median	NaN	NaN	NaN	0	0	Median	2.5986	2.6215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43088000	13355000	29733000	19277000	7498300	11778000	0	0	0	23812000	5857100	17955000	0	0	0	38172	1422	35905	234065;234066;234067	314646;314647;314648	314647			3	
NEGVIEFVSYSDMK	1	Unmodified	1616.7392	0.73922379	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	2	3	3	76.69	76	2	3.7391E-07	67169	160511_QHF_FH_JSI9i_2	88.552	68.422			0.50234	0.5353	152.62	8	8	Median	1.4586	1.2788	NaN	1	1	Median	0.039266	0.0458	NaN	1	1	Median	0.39947	0.39751	181.07	3	3	Median	0.63171	0.72086	128.82	3	3	Median	1704400000	1541400000	163040000	30410000	8869700	21541000	1026500000	987630000	38865000	386830000	339520000	47308000	260680000	205350000	55326000	38173	2263	35906	234068;234069;234070;234071;234072;234073;234074;234075;234076;234077	314649;314650;314651;314652;314653;314654;314655;314656;314657;314658	314655			10	
NEHFQKAIEDK	2	Acetyl (K)	1399.6732	0.67319314	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	36.148	26.428	3	0.0016862	15493	160513_QHF_FH_JSI11Kac_5	65.563	50.687			35.797	37.273	20.942	2	2	Median	NaN	NaN	NaN	0	0	Median	28.332	32.143	NaN	1	1	Median	45.228	43.222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5529700	88627	5441000	0	0	0	2019000	41192	1977800	3510600	47435	3463200	0	0	0	38174	1085	35907	234078;234079;234080	314659;314660;314661	314659	941		3	
NEIASVAYR	0	Unmodified	1021.5193	0.51925868	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.66	4	4	2				3	1		3	5	3	3	31.601	28.441	2	0.00028297	23966	160511_QHF_FH_JSI11i_2	83.623	53.204			0.91902	0.9915	12.811	11	0	Median	1.447	1.2265	6.9507	2	0	Median	0.84227	1.0036	8.941	3	0	Median	0.96964	0.93849	5.2083	3	0	Median	0.89481	0.98081	15.114	3	0	Median	2394900000	1182500000	1212400000	426550000	176740000	249820000	668460000	357080000	311370000	806180000	396750000	409440000	493700000	251980000	241730000	38175	282	35908	234081;234082;234083;234084;234085;234086;234087;234088;234089;234090;234091;234092;234093;234094	314662;314663;314664;314665;314666;314667;314668;314669;314670;314671;314672;314673;314674;314675;314676;314677;314678;314679;314680;314681;314682;314683;314684	314680			23	
NEIDNYEEDYQK	1	Unmodified	1558.6423	0.64234652	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	35.305	34.746	2	1.1596E-05	31067	160511_QHF_FH_JSI10i_1	126.19	118.55			1.1043	1.2105	34.336	6	5	Median	0.95795	0.80118	NaN	1	0	Median	1.0807	1.285	22.876	2	2	Median	1.6621	1.6047	NaN	1	1	Median	0.94206	0.96626	46.285	2	2	Median	304830000	150940000	153890000	33116000	15265000	17852000	103660000	54498000	49165000	33545000	12995000	20549000	134510000	68185000	66321000	38176	2162	35909	234095;234096;234097;234098;234099;234100	314685;314686;314687;314688;314689;314690;314691;314692	314689			8	
NEIIILANTTNTELK	1	Unmodified	1685.92	0.91996535	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4									1	3	4	75.471	74.783	2	6.2722E-27	65618	160511_QHF_FH_JSI11i_2	145.6	122			3.641	3.8813	47.597	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.2385	4.167	61.06	2	2	Median	3.5821	3.7854	54.551	2	2	Median	157100000	38440000	118660000	0	0	0	0	0	0	92224000	25467000	66757000	64877000	12972000	51905000	38177	2306	35910	234101;234102;234103;234104;234105;234106;234107;234108	314693;314694;314695;314696;314697;314698;314699;314700	314700			8	
NEILTAILASLTAR	0	Unmodified	1484.8562	0.85624288	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		7							7	1	5	4	4	100.97	96.999	2;3	5.3816E-05	90702	160511_QHF_FH_JSI11i_2	85.909	73.142			0.74266	0.86385	66.799	10	4	Median	0.62397	0.54421	NaN	1	1	Median	0.6491	0.77787	41.181	2	0	Median	1.1091	1.1125	73.672	4	2	Median	0.63848	0.71697	91.964	3	1	Median	739770000	417390000	322380000	24176000	18371000	5805200	225830000	110820000	115000000	294200000	142980000	151220000	195560000	145210000	50353000	38178	4578	35911	234109;234110;234111;234112;234113;234114;234115;234116;234117;234118;234119;234120;234121;234122	314701;314702;314703;314704;314705;314706;314707;314708;314709;314710;314711;314712;314713	314706			13	
NEINGNWISASSINEAR	0	Unmodified	1873.8919	0.89185312	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	62.494	61.724	2	4.5172E-82	53781	160511_QHF_FH_JSI11i_2	253.15	186.56			1.1122	1.101	7.1744	8	0	Median	1.3363	1.1268	9.696	2	0	Median	0.82458	0.99707	5.7481	2	0	Median	1.132	1.1286	0.4721	2	0	Median	1.0315	1.1121	4.4525	2	0	Median	1154400000	562010000	592380000	219500000	78146000	141360000	349280000	192830000	156450000	344380000	165950000	178430000	241220000	125090000	116140000	38179	2846	35912	234123;234124;234125;234126;234127;234128;234129;234130	314714;314715;314716;314717;314718;314719;314720;314721;314722;314723;314724;314725;314726;314727;314728;314729	314727			16	
NEINIDTLARDEFNLQK	1	Unmodified	2032.0225	0.022532941	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.465	80.689	3	0.00010218	69803	160511_QHF_FH_JSI12i_2	70.091	47.656			1.0693	1.0747	26.327	4	2	Median	1.0338	0.87028	NaN	1	1	Median	0.78045	0.95846	NaN	1	0	Median	1.5039	1.5714	NaN	1	1	Median	1.106	1.205	NaN	1	0	Median	231550000	111820000	119730000	50259000	23795000	26464000	45747000	25901000	19846000	77804000	32976000	44828000	57741000	29151000	28590000	38180	3562	35913	234131;234132;234133;234134	314730;314731;314732;314733;314734;314735	314731			6	
NEIPEEALYK	1	Unmodified	1204.5976	0.59756858	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.917	45.24	2	0.0046248	41134	160511_QHF_FH_JSI12i_1	65.157	52.12			0.55485	0.58407	8.4565	4	4	Median	0.79803	0.65818	NaN	1	1	Median	0.5011	0.58986	NaN	1	1	Median	0.5874	0.57835	NaN	1	1	Median	0.52411	0.5363	NaN	1	1	Median	352020000	194760000	157260000	93701000	42194000	51508000	90025000	48430000	41595000	101050000	60187000	40866000	67241000	43951000	23290000	38181	1168	35914	234135;234136;234137;234138	314736;314737;314738;314739	314737			4	
NEIPNSHILDQYR	0	Unmodified	1597.7849	0.78486885	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	51.145	49.864	2;3	9.5957E-05	42599	160511_QHF_FH_JSI12i_2	94.767	75.006			1.1684	1.2931	20.814	3	1	Median	2.1474	1.8514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1468	1.291	0.22598	2	0	Median	479800000	219220000	260580000	182600000	63588000	119020000	0	0	0	0	0	0	297200000	155630000	141570000	38182	957	35915	234139;234140;234141	314740;314741;314742;314743;314744	314741			5	
NEISEMNR	0	Unmodified	991.43929	0.4392938	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	6.06	5	1					3			2	3	2	2	16.319	12.897	2	0.00036818	10984	160511_QHF_FH_JSI9i_1	105.25	44.354		+	0.93865	1	15.42	8	1	Median	1.2771	1.0192	NaN	1	1	Median	0.82179	0.97507	3.3819	3	0	Median	1.2194	1.1961	28.011	2	0	Median	0.96027	1.0232	19.854	2	0	Median	1695300000	750180000	945120000	247500000	90124000	157380000	541090000	311330000	229750000	440820000	141760000	299060000	465890000	206970000	258920000	38183	53;71	35916	234142;234143;234144;234145;234146;234147;234148;234149;234150	314745;314746;314747;314748;314749;314750;314751;314752;314753;314754;314755;314756	314755			12	
NEIVANVGK	1	Unmodified	942.51345	0.51344502	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.351	23.202	2	0.009753	20229	160511_QHF_FH_JSI11i_1	51.193	39.288			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38184	2804	35917	234151	314757	314757			1	
NEIVANVGKR	1	Unmodified	1098.6146	0.61455605	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	17.124	16.885	2;3	0.015446	14349	160511_QHF_FH_JSI10i_2	60.019	37.782			0.55726	0.55695	31.021	4	4	Median	NaN	NaN	NaN	0	0	Median	0.80631	0.9957	NaN	1	1	Median	0.54226	0.54605	NaN	1	1	Median	0.49758	0.53614	8.1823	2	2	Median	187610000	112360000	75247000	0	0	0	29231000	20153000	9077900	39616000	16986000	22629000	118760000	75219000	43540000	38185	2804	35918	234152;234153;234154;234155;234156	314758;314759;314760;314761;314762	314760			5	
NELEIPGQYDGR	0	Unmodified	1389.6525	0.6524577	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	52.09	48.466	2	3.0181E-05	43703	160511_QHF_FH_JSI11i_1	131.42	104.3			0.98662	1.0157	7.5958	6	0	Median	1.1126	0.91779	NaN	1	0	Median	0.87724	1.0322	8.316	2	0	Median	1.0426	1.0056	9.7357	2	0	Median	0.99809	1.06	NaN	1	0	Median	2227200000	1104400000	1122800000	473400000	222090000	251300000	541500000	277780000	263730000	503870000	247390000	256470000	708430000	357150000	351280000	38186	2094	35919	234157;234158;234159;234160;234161;234162	314763;314764;314765;314766;314767;314768;314769;314770;314771;314772	314764			10	
NELESYAYSLK	1	Unmodified	1315.6296	0.62959699	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.83	4	4	5				4	1	1	4	5	6	4	61.2	57.287	2	3.7413E-07	51932	160511_QHF_FH_JSI10i_1	118.4	91.288			0.75764	0.77182	53.136	19	11	Median	0.94197	0.78755	33.765	4	3	Median	0.64776	0.77182	29.547	5	3	Median	0.76679	0.7612	88.928	6	3	Median	0.77222	0.8499	22.378	4	2	Median	19296000000	9553100000	9743200000	3635100000	1800400000	1834800000	5351600000	2653800000	2697800000	5136600000	2582300000	2554200000	5173000000	2516700000	2656300000	38187	982	35920	234163;234164;234165;234166;234167;234168;234169;234170;234171;234172;234173;234174;234175;234176;234177;234178;234179;234180;234181	314773;314774;314775;314776;314777;314778;314779;314780;314781;314782;314783;314784;314785;314786;314787;314788;314789;314790;314791;314792;314793;314794;314795;314796;314797;314798;314799;314800	314787			28	
NELFLDVLESVNLLMSPQGQVLSAHVSGR	0	Unmodified	3151.6336	0.63358351	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.92	95.199	3	5.3107E-22	56150	160513_QHF_FH_JSI10Kac_6	161.11	138.71			0.42959	0.51186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42959	0.51186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76671000	60183000	16488000	0	0	0	76671000	60183000	16488000	0	0	0	0	0	0	38188	4017	35921	234182	314801	314801			1	
NELFLPGR	0	Unmodified	944.50797	0.50796571	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		49.754	49.085	2	0.0049627	43027	160511_QHF_FH_JSI9i_2	65.246	29.061			1.1426	0.98083	26.343	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1426	1.3894	NaN	1	1	Median	0.9801	0.98083	24.075	2	2	Median	NaN	NaN	NaN	0	0	Median	171610000	84472000	87138000	0	0	0	36358000	16306000	20052000	135250000	68166000	67086000	0	0	0	38189	2353	35922	234183;234184;234185;234186	314802;314803;314804;314805	314802			4	
NELHNLLDKPQLQGIPVLVLGNK	2	Unmodified	2551.4486	0.44860692	3987;5036	Q96BM9;Q9NVJ2	ARL8A;ARL8B	ADP-ribosylation factor-like protein 8A;ADP-ribosylation factor-like protein 8B	no	no	0	0	0	1			By MS/MS		3	0			1									1		100.48	100.48	4	0.010896	89492	160511_QHF_FH_JSI11i_3	33.425	25.713			0.82154	0.76185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82154	0.76185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15479000	10042000	5437300	0	0	0	0	0	0	15479000	10042000	5437300	0	0	0	38190	3987;5036	35923	234187	314806	314806			1	
NELLQAQNPSELYLSSK	1	Unmodified	1932.9793	0.97927114	5386	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			70.414	69.454	2	2.5997E-11	63018	160511_QHF_FH_JSI10i_1	112.42	78.537			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5461300	0	5461300	5461300	0	5461300	0	0	0	0	0	0	0	0	0	38191	5386	35924	234188;234189;234190	314807;314808;314809	314807			3	
NELLTTTVPEIQR	0	Unmodified	1512.8148	0.814772	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	64.238	63.734	2	0.0005249	57677	160511_QHF_FH_JSI10i_1	89.403	65.022			0.62608	0.68545	5.2934	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60781	0.71159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6449	0.66027	NaN	1	1	Median	75849000	43161000	32688000	0	0	0	42470000	23536000	18934000	0	0	0	33379000	19625000	13754000	38192	3861	35925	234191;234192;234193	314810;314811;314812	314811			3	
NELMYQLEQDHDLQAILQER	0	Unmodified	2485.1907	0.19073726	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							1	1	3	5	96.456	96.257	2;3	7.3715E-55	82753	160511_QHF_FH_JSI12i_2	216.04	207.89			0.93933	1.0124	36.805	8	4	Median	0.86045	0.75052	NaN	1	0	Median	0.82706	1.0265	NaN	1	0	Median	1.1032	1.0777	11.584	2	1	Median	1.0095	1.1085	47.786	4	3	Median	909380000	399420000	509960000	124340000	72134000	52207000	167440000	83121000	84319000	329420000	130420000	199000000	288180000	113750000	174430000	38193	2265	35926	234194;234195;234196;234197;234198;234199;234200;234201;234202;234203	314813;314814;314815;314816;314817;314818;314819;314820;314821;314822;314823;314824;314825;314826;314827;314828;314829;314830;314831;314832	314814			20	
NELPSAIK	1	Unmodified	870.48108	0.48108226	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By matching			1.5	0.5	1	1								1	1			28.662	27.561	2	0.011665	23800	160511_QHF_FH_JSI9i_1	53.968	5.4066			1.3246	1.3241	26.525	2	0	Median	1.3453	1.0977	NaN	1	0	Median	1.3042	1.5973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	242420000	85414000	157010000	223590000	76831000	146760000	18834000	8583400	10250000	0	0	0	0	0	0	38194	4675	35927	234204;234205	314833	314833			1	
NELVQKAK	2	Acetyl (K)	970.54475	0.54474515	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	2	1	29.129	20.967	2	0.0066536	13172	160513_QHF_FH_JSI11Kac_4	83.206	35.358			0.72599	0.77712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72599	0.77712	NaN	1	0	Median	13496000	11819000	1677000	0	0	0	1986700	1986700	0	7047700	7047700	0	4462100	2785100	1677000	38195	2051	35928	234206;234207;234208;234209	314834;314835;314836;314837	314835	2116		4	
NEMGHTPLDYAR	0	Unmodified	1402.6299	0.62994811	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	36.542	35.595	2;3	0.00067413	31243	160511_QHF_FH_JSI10i_2	80.763	69.612			1.0633	1.1193	10.357	8	2	Median	1.443	1.2442	4.6489	2	1	Median	0.97597	1.2109	10.926	2	1	Median	1.0745	1.072	0.90594	2	0	Median	0.92799	1.0345	10.932	2	0	Median	363880000	173820000	190060000	78671000	30149000	48523000	93686000	49264000	44423000	121020000	60611000	60409000	70501000	33798000	36704000	38196	4620	35929	234210;234211;234212;234213;234214;234215;234216;234217;234218	314838;314839;314840;314841;314842;314843;314844;314845	314844			8	
NEMNVMLK	1	Unmodified	977.46742	0.4674228	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.367	37.915	2	0.024917	32436	160511_QHF_FH_JSI11i_2	53.166	27.43			0.79298	0.78642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79298	0.78642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87641000	44655000	42986000	0	0	0	0	0	0	87641000	44655000	42986000	0	0	0	38197	1317	35930	234219	314846	314846			1	
NENEEILERPAQLANAR	0	Unmodified	1965.9868	0.98681614	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		50.437	50.121	3	4.9963E-06	44338	160511_QHF_FH_JSI11i_3	80.609	69.975			1.0015	0.94115	25.304	3	3	Median	NaN	NaN	NaN	0	0	Median	0.65401	0.8094	NaN	1	1	Median	1.204	1.1172	24.252	2	2	Median	NaN	NaN	NaN	0	0	Median	237520000	125580000	111940000	0	0	0	101570000	63588000	37982000	135950000	61995000	73955000	0	0	0	38198	5293	35931	234220;234221;234222;234223	314847;314848;314849;314850	314847			4	
NENGAPEDEENFEEAIK	1	Unmodified	1933.8177	0.8177447	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.711	51.038	2	3.0034E-30	46232	160511_QHF_FH_JSI11i_1	187.97	179.02			0.87591	0.91328	5.9829	4	1	Linear	0.98915	0.80172	NaN	1	1	Median	0.758	0.90575	NaN	1	0	Median	0.87942	0.86501	NaN	1	0	Median	0.87242	0.91372	NaN	1	0	Median	480340000	229170000	251170000	83145000	37156000	45989000	124800000	65473000	59327000	116560000	55667000	60894000	155830000	70869000	84964000	38199	2442	35932	234224;234225;234226;234227	314851;314852;314853;314854;314855;314856;314857;314858;314859;314860	314853			10	
NENKPYLFYFNIVK	2	Unmodified	1787.9247	0.9246568	3417	Q8IWA5	SLC44A2	Choline transporter-like protein 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			3						3	1		3	2	84.916	79.415	3	0.00020102	75117	160511_QHF_FH_JSI12i_3	90.759	75.123			1.0246	1.0336	30.952	5	3	Median	0.69958	0.59809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1338	1.0797	29.284	2	1	Median	1.0711	1.1019	9.0549	2	2	Median	300070000	149810000	150260000	72255000	35609000	36646000	0	0	0	109820000	56081000	53736000	117990000	58118000	59876000	38200	3417	35933	234228;234229;234230;234231;234232;234233	314861;314862;314863;314864;314865;314866;314867;314868	314867			8	
NENLAANFLLQQNFDED	0	Unmodified	1993.9017	0.9017491	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.32	100.2	2	0.00027465	90801	160511_QHF_FH_JSI11i_1	69.229	63.735			0.87244	0.97464	22.211	4	1	Median	0.77515	0.63013	NaN	1	1	Median	0.83548	0.99124	NaN	1	0	Median	1.0119	0.99474	NaN	1	0	Median	0.91105	0.95831	NaN	1	0	Median	175200000	103880000	71315000	21069000	15007000	6062500	59202000	31535000	27667000	44478000	24554000	19923000	50447000	32784000	17662000	38201	1831	35934	234234;234235;234236;234237	314869;314870;314871;314872;314873;314874;314875;314876;314877	314870			9	
NENLAANFLLSQNFDDE	0	Unmodified	1952.8752	0.8752	1830	P54725	RAD23A	UV excision repair protein RAD23 homolog A	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		101.11	101.01	2	3.0563E-06	91688	160511_QHF_FH_JSI10i_1	116.81	110.57			1.1417	1.0764	29.739	3	0	Median	1.1417	0.94906	NaN	1	0	Median	0.89701	1.0764	NaN	1	0	Median	1.7635	1.6722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	196050000	92450000	103600000	45441000	24806000	20636000	78456000	44190000	34266000	72151000	23454000	48698000	0	0	0	38202	1830	35935	234238;234239;234240	314878;314879	314878			2	
NENNSHAFMK	1	Unmodified	1190.5139	0.51385572	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	10.532	10.006	2	0.0026371	7915	160511_QHF_FH_JSI10i_2	72.643	52.339			1.3325	1.6349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3325	1.6349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27354000	10895000	16459000	0	0	0	27354000	10895000	16459000	0	0	0	0	0	0	38203	2789	35936	234241;234242	314880;314881	314881			2	
NENPVDYTVQIPPSTTYAITPMK	1	Unmodified	2578.2625	0.26250522	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	2	2	88.981	88.636	3	6.6697E-07	80778	160511_QHF_FH_JSI12i_1	66.3	57.091			1.5605	1.5286	88.452	8	8	Median	1.7709	1.4699	NaN	1	1	Median	1.2426	1.4402	110.39	3	3	Median	1.3495	1.304	28.019	2	2	Median	3.6971	3.9251	126.36	2	2	Median	463340000	111600000	351740000	33427000	18169000	15258000	182510000	35105000	147400000	82524000	28854000	53670000	164880000	29472000	135410000	38204	2325	35937	234243;234244;234245;234246;234247;234248;234249;234250	314882;314883;314884;314885;314886;314887;314888;314889;314890	314884			9	
NENSNDPELK	1	Unmodified	1158.5153	0.51529551	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	10.017	9.6873	2	0.00013586	7478	160511_QHF_FH_JSI10i_1	83.869	70.815			1.1295	1.1363	14.465	5	3	Median	1.768	1.4424	NaN	1	1	Median	0.95369	1.1363	NaN	1	0	Median	1.1794	1.1367	4.4045	2	2	Median	0.95074	0.9669	NaN	1	0	Median	337360000	165910000	171450000	58684000	21486000	37198000	75596000	41070000	34525000	120420000	61146000	59277000	82662000	42210000	40452000	38205	3439	35938	234251;234252;234253;234254;234255	314891;314892;314893;314894;314895;314896	314895			6	
NENTEGSPQEDGVELEGLK	1	Unmodified	2043.9233	0.92327241	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	51.41	50.736	2;3	1.2415E-42	46046	160511_QHF_FH_JSI12i_1	208.47	193.43			1.0281	0.96325	20.675	8	0	Median	0.95821	0.78655	23.642	2	0	Median	0.63904	0.76159	0.35733	2	0	Median	1.1454	1.1133	2.7449	2	0	Median	1.0281	1.0625	8.856	2	0	Median	474400000	258550000	215840000	112740000	62035000	50702000	115810000	73601000	42213000	113890000	50348000	63538000	131960000	72571000	59388000	38206	999	35939	234256;234257;234258;234259;234260;234261;234262;234263	314897;314898;314899;314900;314901;314902;314903;314904;314905;314906;314907	314900			9	
NENTFLDLTVQQIEHLNK	1	Unmodified	2155.0909	0.090946857	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	1	3	100.82	100.68	2;3	2.9076E-31	88469	160511_QHF_FH_JSI9i_2	216.15	182.46			0.9271	0.96892	14.928	7	3	Median	1.0235	0.88674	12.507	2	0	Median	0.78595	0.96892	NaN	1	0	Median	1.1997	1.2287	NaN	1	1	Median	0.88581	1.0096	15.277	3	2	Median	2148300000	1086800000	1061500000	211310000	104160000	107150000	348710000	210180000	138530000	544860000	255920000	288940000	1043400000	516510000	526900000	38207	2772	35940	234264;234265;234266;234267;234268;234269;234270	314908;314909;314910;314911;314912;314913;314914	314911			6	
NEPLSLPELTK	1	Unmodified	1239.6711	0.67106787	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		67.643	67.067	2	0.00014148	60854	160511_QHF_FH_JSI11i_1	83.862	70.825			0.91275	0.89761	1.9339	3	0	Median	1.1253	0.91793	NaN	1	0	Median	0.75877	0.88326	NaN	1	0	Median	0.91275	0.89761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	439040000	239790000	199240000	125450000	66855000	58597000	138870000	79501000	59368000	174720000	93439000	81277000	0	0	0	38208	3736	35941	234271;234272;234273	314915;314916;314917	314915			3	
NEPLTFAWLR	0	Unmodified	1245.6506	0.6506072	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.036	86.255	2	0.0043766	75845	160511_QHF_FH_JSI11i_2	54.982	35.887			0.91685	0.95337	0.097502	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95301	0.95271	NaN	1	0	Median	0.88207	0.95403	NaN	1	0	Median	68588000	34499000	34089000	0	0	0	0	0	0	45778000	23507000	22271000	22810000	10992000	11818000	38209	3466	35942	234274;234275	314918;314919;314920	314920			3	
NEPQNATGAPGR	0	Unmodified	1210.5691	0.56906242	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.6116	6.3006	2	5.1766E-11	6249	160511_QHF_FH_JSI12i_1	150.1	126.67			0.9523	0.98252	5.5057	7	0	Median	1.3005	1.0657	NaN	1	0	Median	0.77686	0.918	0.11361	2	0	Median	0.98396	0.96247	2.9158	2	0	Median	0.92778	1.0033	1.3757	2	0	Median	2686700000	1366100000	1320600000	704100000	362960000	341140000	671610000	353340000	318260000	650150000	309630000	340520000	660800000	340120000	320680000	38210	1727	35943	234276;234277;234278;234279;234280;234281;234282	314921;314922;314923;314924;314925;314926;314927;314928;314929;314930;314931;314932;314933;314934	314924			14	
NEPQNPGANSAR	0	Unmodified	1253.5749	0.57487608	1174	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.6924	7.3447	2	0.00043975	5068	160511_QHF_FH_JSI11i_1	87.184	54.864			1.7891	1.7202	39.085	4	3	Median	1.5154	1.2459	NaN	1	0	Median	2.1122	2.4829	NaN	1	1	Median	2.4368	2.3752	NaN	1	1	Median	1.1634	1.2243	NaN	1	1	Median	469860000	158140000	311710000	93096000	39788000	53309000	146030000	41645000	104390000	126320000	35056000	91263000	104410000	41655000	62754000	38211	1174	35944	234283;234284;234285;234286	314935;314936;314937;314938	314935			4	
NEPYEKDGEK	2	Acetyl (K)	1249.5463	0.54626129	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	22.398	15.142	2	0.046522	9808	160513_QHF_FH_JSI11Kac_3	43.77	35.041			0.57357	0.57158	66.372	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37369	0.35748	NaN	1	0	Median	0.88037	0.9139	NaN	1	0	Median	6818500	4176500	2642100	0	0	0	0	0	0	3315200	2338800	976390	3503400	1837700	1665700	38212	1636	35945	234287;234288	314939;314940	314939			2	
NEQAFEEVFQNANFR	0	Unmodified	1841.8333	0.83327561	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								2	3	3	3	83.327	82.578	2;3	9.9262E-08	71396	160511_QHF_FH_JSI12i_2	134.2	118.66			0.17536	0.17906	269.53	7	7	Median	14.447	12.671	NaN	1	1	Median	0.93083	1.1248	375.85	2	2	Median	1.789	1.8452	329.89	2	2	Median	0.085287	0.091516	4.7312	2	2	Median	173000000	60850000	112150000	31541000	462220	31079000	41482000	16496000	24987000	60743000	18019000	42723000	39235000	25872000	13362000	38213	1293	35946	234289;234290;234291;234292;234293;234294;234295;234296;234297;234298;234299	314941;314942;314943;314944;314945;314946;314947;314948;314949;314950;314951;314952;314953	314942			13	
NEQAVQSAQTIQQLEDQLQQK	1	Unmodified	2426.2037	0.20374478	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	81.895	81.322	3	8.1139E-07	74049	160511_QHF_FH_JSI11i_1	76.027	67.207			1.4147	1.3709	23.65	3	3	Plateau	2.5361	2.0695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4147	1.3709	NaN	1	1	Median	1.3073	1.377	NaN	1	1	Median	72858000	36255000	36602000	16105000	3335100	12769000	0	0	0	35069000	19779000	15290000	21684000	13141000	8542900	38214	2574	35947	234300;234301;234302;234303	314954;314955;314956;314957	314955			4	
NEQDAYAINSYTR	0	Unmodified	1543.6903	0.69029976	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.12	7					3	2			1	2	4	5	41.674	37.012	2;3	3.1325E-15	33439	160511_QHF_FH_JSI11i_1	154.67	123.6			0.9809	1.1154	39.48	11	2	Median	1.4973	1.2272	NaN	1	0	Median	0.98802	1.1708	0.87212	2	0	Median	0.85855	0.82398	39.04	4	1	Median	0.83728	0.88334	48.686	4	1	Median	2656700000	1372700000	1284000000	453510000	196720000	256790000	751090000	469800000	281290000	749600000	356380000	393210000	702450000	349760000	352690000	38215	1249	35948	234304;234305;234306;234307;234308;234309;234310;234311;234312;234313;234314;234315	314958;314959;314960;314961;314962;314963;314964;314965;314966;314967;314968;314969;314970;314971;314972;314973;314974	314959			17	
NEQHTVMK	1	Unmodified	985.46511	0.46511462	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.2788	5.0847	2	0.027434	2875	160511_QHF_FH_JSI11i_2	51.346	27.191			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21518000	0	21518000	0	0	0	0	0	0	21518000	0	21518000	0	0	0	38216	1512	35949	234316	314975	314975			1	
NEQQLFYISQPGSSVVTSLSPGEAVK	1	Unmodified	2764.3919	0.39193948	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	93.874	93.412	3	3.4238E-07	84927	160511_QHF_FH_JSI11i_1	61.109	58.227			1.0956	1.1216	10.193	3	0	Plateau	1.1486	0.95778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1003	1.058	NaN	1	0	Median	1.094	1.1743	NaN	1	0	Median	95362000	42798000	52564000	23315000	8455700	14859000	0	0	0	35543000	18028000	17515000	36505000	16314000	20191000	38217	1695	35950	234317;234318;234319	314976;314977;314978;314979	314976			4	
NEQQLFYISQPGSSVVTSLSPGEAVKK	2	Unmodified	2892.4869	0.4869025	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.321	84.621	3	2.2874E-09	74424	160511_QHF_FH_JSI11i_2	68.231	65.856			0.90516	1.0097	110.17	4	3	Linear	0.10131	0.088124	NaN	1	1	Median	0.16305	0.20105	NaN	1	1	Median	0.26677	0.26926	NaN	1	1	Median	1.1301	1.2315	NaN	1	0	Median	197970000	123520000	74452000	41864000	32468000	9396000	46989000	30125000	16864000	71019000	48520000	22500000	38096000	12404000	25693000	38218	1695	35951	234320;234321;234322;234323	314980;314981;314982;314983;314984;314985	314983			6	
NERLELR	0	Unmodified	928.50903	0.50902834	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				15.45	14.683	3	0.046405	12180	160511_QHF_FH_JSI9i_2	31.934	4.4096			0.67847	0.56843	NaN	1	1	Median	0.67847	0.56843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74355000	38624000	35731000	74355000	38624000	35731000	0	0	0	0	0	0	0	0	0	38219	1867	35952	234324	314986	314986			1	
NESAIVSAIQILLTLLETR	0	Unmodified	2083.1889	0.18886999	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS			16	0									4		4			106.05	100.33	2;3	1.2813E-68	59462	160513_QHF_FH_JSI10Kac_6	250.41	208.32			1.0459	1.2164	150.08	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0459	1.2164	150.08	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	678090000	364860000	313220000	0	0	0	678090000	364860000	313220000	0	0	0	0	0	0	38220	2887	35953	234325;234326;234327;234328	314987;314988;314989;314990	314988			4	
NESAVIVAPTSSGK	1	Unmodified	1358.7042	0.70415892	3454	Q8IY21;Q5H9U9	DDX60;DDX60L	Probable ATP-dependent RNA helicase DDX60;Probable ATP-dependent RNA helicase DDX60-like	yes	no	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			32.883	32.088	2	0.0022729	28106	160511_QHF_FH_JSI9i_1	71.558	55.551			2.8195	2.6739	21.79	2	2	Median	2.8019	2.2921	NaN	1	1	Median	2.8373	3.1193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27481000	6440500	21041000	15342000	4038700	11303000	12139000	2401800	9737600	0	0	0	0	0	0	38221	3454	35954	234329;234330	314991;314992	314992			2	
NESCSENYTTDFIYQLYSEEGK	1	Unmodified	2676.1174	0.11735712	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	97.632	97.433	3	9.7835E-06	88348	160511_QHF_FH_JSI12i_1	64.295	57.496			1.727	1.7949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.727	1.7949	NaN	1	1	Median	19398000	6198400	13199000	0	0	0	0	0	0	0	0	0	19398000	6198400	13199000	38222	2176	35955	234331	314993	314993			1	
NESGTWIQYGEEK	1	Unmodified	1539.6842	0.68415175	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.008	45.332	2	4.1171E-10	40790	160511_QHF_FH_JSI10i_1	142.97	127.08			1.0809	0.92409	116.6	4	1	Linear	14.096	11.46	NaN	1	1	Median	0.98957	1.1664	NaN	1	0	Median	1.1384	1.1064	NaN	1	0	Median	1.0263	1.0712	NaN	1	0	Median	483500000	206400000	277100000	68249000	5943500	62306000	123050000	61950000	61102000	144370000	76462000	67908000	147830000	62045000	85784000	38223	3250	35956	234332;234333;234334;234335	314994;314995;314996;314997;314998;314999;315000;315001	314999			8	
NESLNAESK	1	Unmodified	990.4618	0.46180338	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.5386	8.3593	2	0.00031189	6151	160511_QHF_FH_JSI10i_1	92.838	52.57			1.0102	1.071	0.7709	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91583	1.0768	NaN	1	1	Median	1.1143	1.0651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	244130000	104080000	140050000	0	0	0	88469000	45912000	42557000	155660000	58170000	97492000	0	0	0	38224	3564	35957	234336;234337	315002;315003	315003			2	
NESLTEHPR	0	Unmodified	1081.5152	0.51523593	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	8.4393	7.9963	2	0.0015942	5694	160511_QHF_FH_JSI12i_2	68.371	44.35			0.88196	0.90945	4.8978	4	1	Median	1.0605	0.88158	NaN	1	0	Median	0.68854	0.855	NaN	1	1	Median	0.93471	0.93821	NaN	1	0	Median	0.83219	0.9462	NaN	1	0	Median	186820000	96170000	90647000	25410000	10715000	14695000	41552000	24881000	16671000	68463000	36711000	31752000	51392000	23864000	27528000	38225	4290	35958	234338;234339;234340;234341	315004;315005;315006;315007	315004			4	
NESSFASHK	1	Unmodified	1005.4516	0.45157304	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	6.233	5.8347	2	0.00064023	3771	160511_QHF_FH_JSI9i_2	87.476	38.118			0.31371	0.31591	36.706	3	3	Median	0.69024	0.59388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31371	0.31591	NaN	1	1	Median	0.27345	0.31308	NaN	1	1	Median	166870000	116620000	50256000	44235000	27237000	16998000	0	0	0	74670000	51857000	22813000	47970000	37524000	10445000	38226	4024	35959	234342;234343;234344	315008;315009;315010	315009			3	
NESSLASTLK	1	Unmodified	1048.5401	0.5400537	2823	Q3ZAQ7	VMA21	Vacuolar ATPase assembly integral membrane protein VMA21	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	28.336	27.776	2	0.0080401	24931	160511_QHF_FH_JSI12i_1	60.398	42.412			2.6393	2.6708	83.985	4	4	Median	4.2098	3.4318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1879	1.1336	99.486	2	2	Median	2.9083	3.1138	NaN	1	1	Median	130060000	53139000	76922000	21419000	4001400	17418000	0	0	0	72217000	38141000	34076000	36425000	10996000	25429000	38227	2823	35960	234345;234346;234347;234348	315011;315012;315013;315014	315013			4	
NESSPAPPDSDADK	1	Unmodified	1428.6005	0.6004817	3624	Q8ND04	SMG8	Protein SMG8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	13.563	13.059	2	0.00035312	10462	160511_QHF_FH_JSI9i_1	100.38	85.116			1.2403	1.2548	41.524	3	2	Plateau	2.1155	1.7889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9914	2.871	NaN	1	1	Median	1.2403	1.2548	NaN	1	0	Median	86653000	31072000	55581000	30031000	9618100	20413000	0	0	0	31949000	12197000	19752000	24673000	9256500	15416000	38228	3624	35961	234349;234350;234351	315015;315016;315017	315017			2	
NESTPPSEELELDK	1	Unmodified	1586.7312	0.73116153	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.825	42.17	2	1.3526E-14	38007	160511_QHF_FH_JSI10i_1	158.04	122.1			0.85743	0.84912	8.1835	4	0	Median	1.0427	0.8528	NaN	1	0	Median	0.82744	0.96345	NaN	1	0	Median	0.8885	0.84546	NaN	1	0	Median	0.7817	0.79176	NaN	1	0	Median	539990000	291950000	248040000	104860000	49640000	55217000	148890000	86223000	62665000	154500000	79737000	74764000	131750000	76353000	55395000	38229	3217	35962	234352;234353;234354;234355	315018;315019;315020;315021;315022;315023;315024;315025;315026;315027;315028;315029;315030;315031	315027			14	
NESVPEVEALLAR	0	Unmodified	1425.7464	0.74635808	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				76.79	75.898	2	0.0023261	67521	160511_QHF_FH_JSI9i_1	68.069	50.205			1.0756	0.86315	NaN	1	1	Median	1.0756	0.86315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40974000	15286000	25687000	40974000	15286000	25687000	0	0	0	0	0	0	0	0	0	38230	4986	35963	234356	315032	315032			1	
NETDEDGWTTVR	0	Unmodified	1421.6059	0.60590143	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.635	33.031	2	1.6141E-05	29707	160511_QHF_FH_JSI12i_1	113.22	106.63			0.92024	0.91773	8.1368	4	0	Median	1.132	0.93274	NaN	1	0	Median	0.9192	1.0672	NaN	1	0	Median	0.92129	0.89582	NaN	1	0	Median	0.87958	0.90297	NaN	1	0	Median	538060000	268900000	269150000	112030000	52633000	59396000	168480000	89748000	78729000	145810000	68794000	77015000	111740000	57729000	54014000	38231	2502	35964	234357;234358;234359;234360	315033;315034;315035;315036;315037;315038;315039;315040	315036			8	
NETGGGEGIEVLK	1	Unmodified	1301.6463	0.64630969	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		48.661	39.238	2	0.0030407	21853	160513_QHF_FH_JSI11Kac_3	63.624	53.937			0.81647	0.8307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81647	0.8307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5829400	2968600	2860800	0	0	0	0	0	0	5829400	2968600	2860800	0	0	0	38232	1636	35965	234361	315041	315041			1	
NETGGGEGVEVLVNEPYEK	1	Unmodified	2018.9433	0.94327957	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	60.488	59.908	2;3	6.2039E-18	54080	160511_QHF_FH_JSI10i_1	192.24	177.21			1.0697	1.021	26.801	7	1	Median	1.0697	0.84943	NaN	1	0	Median	0.96577	1.1469	16.447	2	0	Median	1.2938	1.2425	37.207	2	1	Median	1.0585	1.0939	40.73	2	0	Median	305710000	144490000	161230000	25545000	12325000	13220000	106290000	54107000	52186000	69063000	26906000	42157000	104810000	51148000	53666000	38233	2145	35966	234362;234363;234364;234365;234366;234367;234368	315042;315043;315044;315045;315046;315047;315048;315049;315050;315051;315052;315053	315048			11	
NETIAQEDK	1	Unmodified	1046.488	0.48801813	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	2	2	3	10.179	8.2701	2	3.6943E-06	7109	160511_QHF_FH_JSI12i_1	135.71	102.87			2.4405	2.1041	91.992	9	9	Median	1.3951	1.1496	80.188	2	2	Median	1.1527	1.351	149.27	2	2	Median	3.0253	2.9256	46.618	2	2	Median	0.97861	1.0212	115.42	3	3	Plateau	975470000	486620000	488850000	223670000	98762000	124910000	298280000	168770000	129510000	139480000	46519000	92956000	314040000	172570000	141470000	38234	3765	35967	234369;234370;234371;234372;234373;234374;234375;234376;234377	315054;315055;315056;315057;315058;315059;315060;315061;315062	315055			9	
NETLGGTCLNVGCIPSK	1	Unmodified	1818.8604	0.86041834	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		61.671	60.909	2	2.099E-07	55251	160511_QHF_FH_JSI11i_1	121.79	88.563			0.8407	0.74946	3.6953	2	2	Median	0.89431	0.73013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7903	0.7693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46139000	30285000	15854000	17750000	11779000	5970900	0	0	0	28389000	18506000	9883300	0	0	0	38235	935	35968	234378;234379	315063;315064	315063			2	
NETSAPFK	1	Unmodified	892.42905	0.42904669	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.65	4	2	1			3	1			3	2	2	4	17.922	14.824	2	0.0051794	12757	160511_QHF_FH_JSI12i_1	66.429	45.73			0.94328	0.95945	22.055	11	2	Median	1.6314	1.3307	26.637	3	2	Median	0.76802	0.90451	8.3398	2	0	Median	0.8763	0.87379	8.4811	2	0	Median	0.97436	1.0671	21.596	4	0	Median	3391800000	1628900000	1762900000	821180000	349810000	471370000	900620000	424910000	475710000	800950000	418890000	382050000	869080000	435310000	433770000	38236	878	35969	234380;234381;234382;234383;234384;234385;234386;234387;234388;234389;234390	315065;315066;315067;315068;315069;315070;315071;315072;315073;315074;315075	315068			11	
NETYNSHPLLVK	1	Unmodified	1413.7252	0.72522871	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	3	1	31.391	30.58	2;3	0.00036127	25775	160511_QHF_FH_JSI11i_2	73.781	55.917			1.5438	1.2834	69.038	5	5	Median	1.5438	1.2834	NaN	1	1	Median	1.6698	2.0117	NaN	1	1	Median	1.0069	0.98363	114.9	2	2	Median	0.64708	0.72332	NaN	1	1	Median	346920000	170730000	176190000	68718000	40420000	28298000	73846000	39676000	34170000	117070000	42686000	74383000	87285000	47943000	39342000	38237	3675	35970	234391;234392;234393;234394;234395;234396	315076;315077;315078;315079;315080;315081	315080			6	
NEVAAEVAK	1	Unmodified	929.48181	0.48181054	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.2	5.88	2					3				1		1	3	19.61	14.996	2	0.0033871	13132	160511_QHF_FH_JSI12i_1	70.816	47.774			0.94	0.91487	53.792	5	4	Median	1.604	1.334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94	0.91487	NaN	1	0	Median	0.51148	0.54547	68.87	3	3	Median	733840000	395200000	338640000	358020000	176110000	181910000	0	0	0	11088000	5264800	5823400	364740000	213820000	150920000	38238	1872	35971	234397;234398;234399;234400;234401	315082;315083;315084;315085;315086	315082			5	
NEVAQLK	1	Unmodified	800.43922	0.43921744	1119;1075	P17544;Q02930;P15336	ATF7;CREB5;ATF2	Cyclic AMP-dependent transcription factor ATF-7;Cyclic AMP-responsive element-binding protein 5;Cyclic AMP-dependent transcription factor ATF-2	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.027	13.585	2	0.035999	10961	160511_QHF_FH_JSI9i_1	49.358	18.069			0.8571	0.78487	16.148	4	0	Median	0.95947	0.78037	NaN	1	0	Median	0.92448	1.0773	NaN	1	0	Median	0.79463	0.77155	NaN	1	0	Median	0.77261	0.78939	NaN	1	0	Median	306090000	153420000	152670000	58869000	29880000	28988000	72147000	39577000	32571000	88814000	42152000	46662000	86256000	41809000	44447000	38239	1119;1075	35972	234402;234403;234404;234405	315087	315087			1	
NEVDLVVHSLK	1	Unmodified	1251.6823	0.68230126	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.733	54.54	3	0.0003759	46780	160511_QHF_FH_JSI12i_2	52.576	41.356			1.0197	1.0086	25.927	2	0	Median	1.3641	1.2115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76226	0.83965	NaN	1	0	Median	112090000	59912000	52177000	36594000	12196000	24397000	0	0	0	0	0	0	75495000	47716000	27779000	38240	901	35973	234406;234407;234408;234409	315088;315089;315090	315088			3	
NEVDMQVLHLLGPK	1	Unmodified	1591.8392	0.83921261	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	3	2	81.568	80.875	2;3	1.7131E-06	70088	160511_QHF_FH_JSI12i_2	138.24	128.8			0.86045	0.86968	22.328	7	1	Median	0.93703	0.82464	NaN	1	0	Median	0.66426	0.80658	NaN	1	0	Median	0.86045	0.86968	35.229	3	1	Median	0.85237	0.93326	5.9178	2	0	Median	863250000	424100000	439140000	128710000	53157000	75549000	140670000	78251000	62421000	345540000	178870000	166670000	248330000	113830000	134500000	38241	1609	35974	234410;234411;234412;234413;234414;234415;234416	315091;315092;315093;315094;315095;315096;315097;315098;315099;315100;315101;315102;315103;315104;315105;315106;315107;315108;315109;315110	315096			20	
NEVDSTLTFR	0	Unmodified	1180.5724	0.57241646	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		52.493	41.759	2	0.045531	24381	160513_QHF_FH_JSI11Kac_4	42.743	29.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38242	1196	35975	234417	315111	315111			1	
NEVLCVLTQK	1	Unmodified	1202.6329	0.63290823	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			59.88	59.003	2	0.0094409	52276	160511_QHF_FH_JSI10i_2	58.699	37.7			0.46598	0.58839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46598	0.58839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13862000	9326600	4535000	0	0	0	13862000	9326600	4535000	0	0	0	0	0	0	38243	417	35976	234418	315112	315112			1	
NEVLEDHVQNNAEQLGAFAAGVK	1	Unmodified	2452.1983	0.19826548	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	73.95	72.675	3	0.00024536	64686	160511_QHF_FH_JSI10i_2	46.415	31.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9243700	0	9243700	0	0	0	0	0	0	0	0	0	9243700	0	9243700	38244	4135	35977	234419;234420	315113;315114	315114			2	
NEVLMVNIGSLSTGGR	0	Unmodified	1645.8458	0.84575455	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	79.943	79.294	2	9.5456E-36	69720	160511_QHF_FH_JSI11i_2	167.89	95.884			1.1829	1.115	22.208	6	5	Median	1.1676	0.97685	NaN	1	1	Median	0.99785	1.2071	41.382	2	2	Median	1.1985	1.2087	NaN	1	1	Median	1.0952	1.185	20.013	2	1	Median	428660000	226100000	202560000	67810000	31868000	35942000	116660000	74925000	41732000	115080000	56395000	58687000	129110000	62910000	66200000	38245	1508	35978	234421;234422;234423;234424;234425;234426;234427	315115;315116;315117;315118;315119;315120;315121;315122	315121			8	
NEVLMVNIGSLSTGGR	0	Oxidation (M)	1661.8407	0.84066917	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	1	0			By MS/MS	By MS/MS	8.5	6.5		1						1				1	1	78.033	67.424	2	0.00013099	61359	160511_QHF_FH_JSI12i_2	80.96	58.042			0.95814	0.93695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95814	0.93695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3278200	1510100	1768100	0	0	0	0	0	0	3278200	1510100	1768100	0	0	0	38246	1508	35978	234428;234429	315123;315124	315123		1188	2	
NEVNGTSEDIK	1	Unmodified	1204.5572	0.55716033	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2					1	2	4	16.379	13.142	2	9.3471E-06	11127	160511_QHF_FH_JSI11i_1	108.7	88.91			0.78535	0.8263	29.006	7	5	Median	NaN	NaN	NaN	0	0	Median	0.71128	0.85319	NaN	1	0	Median	1.0024	0.97749	35.623	2	1	Median	0.72662	0.76728	34.464	4	4	Median	474210000	231000000	243210000	0	0	0	127670000	72505000	55161000	121740000	50886000	70858000	224800000	107610000	117190000	38247	660	35979	234430;234431;234432;234433;234434;234435;234436	315125;315126;315127;315128;315129;315130;315131;315132	315126			8	
NEVSFVIHNLPVLAK	1	Unmodified	1678.9406	0.94064121	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.266		12	1							2	3	4	4	90.37	89.83	2;3	4.986E-17	79585	160511_QHF_FH_JSI10i_2	127.37	104.49			0.90458	1.1218	104.35	11	10	Median	0.92284	0.7971	84.592	2	1	Median	1.1123	1.3692	28.181	2	2	Median	0.88086	0.86506	125.34	4	4	Median	0.78078	0.84817	156.35	3	3	Median	361650000	160850000	200800000	72341000	37494000	34847000	139660000	66417000	73239000	90491000	33293000	57198000	59159000	23642000	35517000	38248	1691	35980	234437;234438;234439;234440;234441;234442;234443;234444;234445;234446;234447;234448;234449	315133;315134;315135;315136;315137;315138;315139;315140;315141;315142;315143;315144;315145;315146	315146			14	
NEVSLVAEGFLPEDGSGR	0	Unmodified	1874.901	0.90102082	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		81.777	81.42	2	1.0901E-05	74126	160511_QHF_FH_JSI11i_1	100.45	73.305			0.56936	0.54024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56936	0.54024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62595000	43964000	18630000	0	0	0	0	0	0	62595000	43964000	18630000	0	0	0	38249	648	35981	234450	315147	315147			1	
NEYAAQLQNFNGEQHK	1	Unmodified	1889.8656	0.86563837	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	40.426	39.467	3	1.866E-05	33739	160511_QHF_FH_JSI11i_2	88.133	76.871			1.1601	1.128	5.2667	3	0	Median	1.2617	1.0617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1601	1.1792	NaN	1	0	Median	0.9885	1.128	NaN	1	0	Median	160200000	63596000	96607000	40512000	16119000	24394000	0	0	0	84480000	30222000	54257000	35210000	17255000	17956000	38250	2934	35982	234451;234452;234453	315148;315149;315150;315151	315151			4	
NEYAAQLQR	0	Unmodified	1091.536	0.53597137	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.4	4.8		4					1			2		2	1	21.931	20.755	2	0.0021278	17282	160511_QHF_FH_JSI11i_2	67.169	49.784			0.79541	0.8473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79541	0.8473	NaN	1	1	Median	16299000	8768100	7531300	0	0	0	0	0	0	0	0	0	16299000	8768100	7531300	38251	2690	35983	234454;234455;234456;234457;234458	315152;315153;315154;315155;315156	315156			5	
NEYLQADEANK	1	Unmodified	1293.5837	0.58370943	5252	Q9UBS8	RNF14	E3 ubiquitin-protein ligase RNF14	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.723	21.594	2	0.00047468	18889	160511_QHF_FH_JSI12i_1	79.07	17.635			2.8531	2.6955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8531	2.6955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23189000	5235600	17954000	0	0	0	0	0	0	23189000	5235600	17954000	0	0	0	38252	5252	35984	234459;234460	315157;315158	315158			2	
NFAADHFNQEILPVFLNANR	0	Unmodified	2329.1604	0.16036383	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	97.427	97.387	3	1.1066E-07	84276	160511_QHF_FH_JSI12i_3	98.443	95.228			1.1884	1.1906	8.1727	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0464	1.261	NaN	1	1	Median	1.1499	1.0732	NaN	1	1	Median	1.1884	1.1906	NaN	1	0	Median	293190000	142550000	150650000	0	0	0	73793000	38618000	35174000	95042000	42235000	52807000	124360000	61694000	62666000	38253	3119	35985	234461;234462;234463	315159;315160;315161;315162	315162			4	
NFAAFFSHILSLASPSHPK	1	Unmodified	2070.0687	0.068695273	3374	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	95.671	87.366	3;4	2.0527E-18	48976	160513_QHF_FH_JSI9Kac_6	136.68	126.89			0.83452	0.74609	79.391	6	5	Median	0.86079	0.73618	NaN	1	0	Median	0.46982	0.56203	119	2	2	Median	0.9999	0.93748	30.404	2	2	Median	0.18848	0.20092	NaN	1	1	Median	2235400000	1205200000	1030100000	521050000	200660000	320390000	1155400000	731610000	423780000	357020000	190510000	166520000	201900000	82462000	119440000	38254	3374	35986	234464;234465;234466;234467;234468;234469;234470	315163;315164;315165;315166;315167;315168;315169;315170	315165			8	
NFAELAR	0	Unmodified	819.4239	0.42390173	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		32.937	32.538	2	0.059099	27647	160511_QHF_FH_JSI11i_2	46.016	28.168			12.84	12.969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.84	12.969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	168770000	28002000	140770000	0	0	0	0	0	0	168770000	28002000	140770000	0	0	0	38255	5581	35987	234471	315171	315171			1	
NFAELKIK	2	Acetyl (K)	1003.5702	0.57023162	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	68.564	57.771	2	0.012193	31101	160513_QHF_FH_JSI11Kac_5	75.825	46.676			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28598000	28598000	0	0	0	0	0	0	0	23322000	23322000	0	5275900	5275900	0	38256	1138	35988	234472;234473	315172;315173	315172	993		2	
NFAEPGSEVYLR	0	Unmodified	1380.6674	0.66737948	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	55.116	54.075	2	1.3286E-05	47836	160511_QHF_FH_JSI10i_2	94.616	78.418			1.3475	1.4951	39.525	5	3	Median	1.7523	1.5805	NaN	1	0	Median	1.877	2.2971	NaN	1	1	Median	1.3164	1.3061	NaN	1	0	Median	0.96705	1.0736	46.832	2	2	Median	191780000	85324000	106450000	47855000	20875000	26980000	32903000	10507000	22395000	54271000	24049000	30222000	56746000	29893000	26853000	38257	1435	35989	234474;234475;234476;234477;234478;234479	315174;315175;315176;315177;315178;315179;315180;315181	315181			8	
NFAEPGSEVYLRR	0	Unmodified	1536.7685	0.76849051	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			45.63	44.62	3	0.016589	39098	160511_QHF_FH_JSI9i_2	33.685	25.581			1.1532	1.1879	18.779	2	1	Median	1.5586	1.3566	NaN	1	0	Median	0.85323	1.0402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85967000	43195000	42773000	42341000	19809000	22532000	43626000	23385000	20241000	0	0	0	0	0	0	38258	1435	35990	234480;234481	315182;315183	315182			2	
NFAFLEFR	0	Unmodified	1042.5236	0.52361577	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	6.73		7							4	3	3	3	2	85.462	82.063	2	5.4747E-06	40070	160513_QHF_FH_JSI12Kac_6	142.79	128.01			1.7843	1.9137	93.806	11	10	Median	1.4048	1.1817	94.05	3	2	Median	0.47354	0.5618	113.35	3	3	Median	2.7377	2.6327	104.69	3	3	Median	2.4432	2.6587	46.497	2	2	Median	2138300000	1068500000	1069700000	458220000	244980000	213240000	674810000	399070000	275740000	666850000	268870000	397970000	338390000	155620000	182780000	38259	1274	35991	234482;234483;234484;234485;234486;234487;234488;234489;234490;234491;234492	315184;315185;315186;315187;315188;315189;315190;315191;315192;315193;315194;315195	315194			12	
NFALLGVGTSK	1	Unmodified	1105.6132	0.61315906	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			67.371	66.513	2	0.0076344	58497	160511_QHF_FH_JSI9i_2	60.518	35.596			0.31488	0.32382	331.16	2	2	Median	3.8574	3.3673	NaN	1	1	Median	0.025703	0.03114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77758000	56529000	21229000	24088000	4254400	19833000	53670000	52274000	1396000	0	0	0	0	0	0	38260	5	35992	234493;234494	315196;315197	315196			2	
NFAPGETPAAIANSSGQPYQPLR	0	Unmodified	2385.1713	0.17132244	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.462	69.852	3	2.6796E-06	61156	160511_QHF_FH_JSI11i_2	49.902	42.204			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38261	3378	35993	234495	315198	315198			1	
NFAQLTVSGSR	0	Unmodified	1178.6044	0.60438529	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10	6.54		2						2	1	2		2	1	47.732	42.328	2	1.022E-05	36305	160511_QHF_FH_JSI12i_2	110.31	57.143			0.37218	0.33608	80.656	4	4	Median	0.95481	0.78202	97.014	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28062	0.28558	NaN	1	1	Median	0.2588	0.2868	NaN	1	1	Median	221560000	147920000	73648000	7520500	2897400	4623200	0	0	0	135220000	93004000	42217000	78823000	52016000	26807000	38262	1428	35994	234496;234497;234498;234499;234500	315199;315200;315201;315202;315203	315199			5	
NFATSLYSMIK	1	Unmodified	1273.6377	0.63765925	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	5	3	83.861	80.699	2	2.9699E-13	74588	160511_QHF_FH_JSI10i_2	150.35	132.04			1.0682	0.97807	45.879	12	4	Median	1.157	1.0005	6.9825	3	0	Plateau	0.80498	0.96846	9.2153	2	0	Median	0.84323	0.83292	48.103	4	2	Median	1.1757	1.2929	84.175	3	2	Median	6409000000	3250500000	3158600000	1776600000	891190000	885450000	1453600000	736880000	716720000	1930500000	966620000	963880000	1248300000	655790000	592510000	38263	916	35995	234501;234502;234503;234504;234505;234506;234507;234508;234509;234510;234511;234512;234513;234514;234515	315204;315205;315206;315207;315208;315209;315210;315211;315212;315213;315214;315215;315216;315217;315218;315219;315220;315221;315222;315223;315224;315225;315226;315227;315228;315229;315230	315227			26	
NFATSLYSMIK	1	Oxidation (M)	1289.6326	0.63257388	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.77		2						1	6	4	1	2	2	71.613	64.147	2	5.5854E-05	33699	160513_QHF_FH_JSI12Kac_6	96.015	76.744			1.0629	1.0568	15.583	9	1	Median	1.4004	1.1849	16.871	4	0	Linear	1.1339	1.4036	NaN	1	1	Median	0.99158	0.95085	8.282	2	0	Median	0.98904	1.0648	1.0643	2	0	Median	400230000	186130000	214100000	177260000	73205000	104050000	70073000	31837000	38237000	97642000	52860000	44782000	55261000	28229000	27032000	38264	916	35995	234516;234517;234518;234519;234520;234521;234522;234523;234524	315231;315232;315233;315234;315235;315236;315237;315238;315239	315239		493	9	
NFDDATMK	1	Unmodified	940.39603	0.396032	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	23.411	22.541	2	0.028456	19726	160511_QHF_FH_JSI12i_1	50.607	36.935			1.5285	1.4404	145.39	2	2	Median	0.61775	0.51523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7818	4.0266	NaN	1	1	Median	464910000	209790000	255120000	211210000	130040000	81172000	0	0	0	0	0	0	253700000	79750000	173950000	38265	4268	35996	234525;234526	315240;315241	315240			2	
NFDDEDSVDGNRPSSASSTSSK	1	Unmodified	2300.9629	0.96290539	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.709	23.165	3	3.492E-08	19901	160511_QHF_FH_JSI9i_1	94.837	91.995			0.91002	0.96118	22.451	4	1	Median	0.83534	0.67871	NaN	1	0	Median	0.95696	1.132	NaN	1	0	Median	1.1078	1.0381	NaN	1	0	Median	0.86539	0.88995	NaN	1	1	Median	216860000	114990000	101870000	55437000	29434000	26003000	58803000	34877000	23926000	50636000	25015000	25621000	51989000	25666000	26323000	38266	3266	35997	234527;234528;234529;234530	315242;315243;315244;315245	315245			4	
NFDEAAK	1	Unmodified	793.36063	0.36063277	3991	Q96BR5	COA7	Cytochrome c oxidase assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.008	11.603	2	0.023935	9548	160511_QHF_FH_JSI12i_1	49.358	13.173			0.81164	0.95276	47.821	3	3	Median	1.4489	1.2034	NaN	1	1	Median	0.81164	0.95276	NaN	1	1	Median	0.48805	0.47958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	447440000	264650000	182790000	115210000	47914000	67294000	157920000	99055000	58862000	174310000	117680000	56638000	0	0	0	38267	3991	35998	234531;234532;234533;234534	315246;315247;315248;315249	315247			4	
NFDEILR	0	Unmodified	905.46068	0.46068117	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.16	2	8	5					1		4	5	5	2	53.674	52.063	2	0.012541	45041	160511_QHF_FH_JSI11i_2	73.616	52.07			0.70522	0.7046	178.47	16	13	Median	0.94348	0.76716	184.37	4	4	Median	0.75905	0.8972	164.7	5	4	Median	0.65521	0.61193	141.59	5	4	Median	0.32392	0.35566	413.52	2	1	Median	14762000000	7844400000	6917200000	3003900000	1603100000	1400900000	4122200000	2271700000	1850500000	5115900000	2382600000	2733300000	2519600000	1587100000	932530000	38268	1333	35999	234535;234536;234537;234538;234539;234540;234541;234542;234543;234544;234545;234546;234547;234548;234549;234550	315250;315251;315252;315253;315254;315255;315256;315257;315258;315259;315260;315261;315262;315263;315264;315265;315266;315267;315268	315264			19	
NFDFEDVFVK	1	Unmodified	1258.587	0.58700389	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							3	3	2	2	91.512	90.826	2	0.00012467	79840	160511_QHF_FH_JSI11i_2	84.213	73.061			1.0212	1.1031	33.549	9	7	Median	1.956	1.6361	41.016	3	3	Median	1.0465	1.3368	45.504	3	3	Plateau	1.247	1.2284	23.516	2	1	Median	0.98227	1.1031	NaN	1	0	Median	559010000	271200000	287810000	83041000	32971000	50070000	223850000	107840000	116010000	156550000	77862000	78686000	95578000	52526000	43052000	38269	2767	36000	234551;234552;234553;234554;234555;234556;234557;234558;234559;234560	315269;315270;315271;315272;315273;315274;315275;315276;315277;315278;315279;315280;315281;315282;315283;315284;315285	315281			17	
NFDLRPGVIVR	0	Unmodified	1284.7303	0.73025451	1370	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.71	0.452		2	5							3	2	1	1	59.197	58.237	2;3	4.6063E-05	47838	160511_QHF_FH_JSI9i_3	72.652	62.6			0.87298	0.81991	22.623	7	0	Median	1.1341	0.9196	21.044	3	0	Median	0.83009	0.99997	36.619	2	0	Median	0.87298	0.81991	NaN	1	0	Median	0.71234	0.71816	NaN	1	0	Median	775050000	415650000	359390000	368790000	175180000	193610000	295890000	174390000	121500000	58790000	29626000	29165000	51578000	36455000	15123000	38270	1370	36001	234561;234562;234563;234564;234565;234566;234567	315286;315287;315288;315289;315290;315291;315292	315287			7	
NFDMVIVYK	1	Oxidation (M)	1143.5634	0.56343168	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		14.8	0.373							1	5		2	3	1		66.899	56.186	2	0.021807	30509	160513_QHF_FH_JSI10Kac_4	45.68	31.523			0.76717	0.7684	69.167	6	4	Median	0.54512	0.45687	15.606	2	2	Median	1.8386	2.1686	80.581	3	1	Plateau	1.3744	1.3191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43969000	21526000	22443000	10789000	5433100	5356300	26776000	12793000	13983000	6403700	3300000	3103600	0	0	0	38271	5658	36002	234568;234569;234570;234571;234572;234573	315293;315294;315295;315296;315297	315295			5	
NFDMVIVYK	1	Unmodified	1127.5685	0.56851706	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				72.734	71.899	2	0.011892	63262	160511_QHF_FH_JSI9i_2	48.283	42.801			1.4688	1.2293	NaN	1	0	Median	1.4688	1.2293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64286000	25991000	38295000	64286000	25991000	38295000	0	0	0	0	0	0	0	0	0	38272	5658	36002	234574	315298	315298			1	
NFDRENVR	0	Unmodified	1048.505	0.5050056	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			11.217	10.582	3	0.042475	8254	160511_QHF_FH_JSI10i_3	24.03	17.295			0.92978	1.0663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92978	1.0663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59443000	30876000	28567000	0	0	0	59443000	30876000	28567000	0	0	0	0	0	0	38273	454	36003	234575	315299	315299			1	
NFDVGHVPIR	0	Unmodified	1152.604	0.60399136	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	47.001	46.115	3	0.0031538	40554	160511_QHF_FH_JSI10i_2	34.79	26.097			0.80402	0.8627	40.775	5	3	Median	0.75975	0.64956	NaN	1	1	Median	0.89549	1.0732	NaN	1	0	Median	0.8971	0.93291	72.545	2	2	Median	0.80402	0.8627	NaN	1	0	Median	271430000	148830000	122610000	29902000	14960000	14941000	42711000	22913000	19797000	154200000	86251000	67945000	44625000	24702000	19923000	38274	1712	36004	234576;234577;234578;234579;234580	315300;315301;315302;315303;315304;315305	315305			6	
NFEATLGWLQEHACSR	0	Unmodified	1917.8792	0.87917994	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			84.061	82.816	3	0.001712	69459	160511_QHF_FH_JSI10i_3	60.209	49.394			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32336000	15906000	16430000	0	0	0	32336000	15906000	16430000	0	0	0	0	0	0	38275	5215	36005	234581;234582	315306;315307	315307			2	
NFEDSSPETLEAHK	1	Unmodified	1602.7162	0.71618016	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								1	2	2	5	34.673	33.891	2;3	7.4965E-10	28761	160511_QHF_FH_JSI12i_2	107.09	94.512			1.3927	1.5008	41.16	8	8	Median	1.6307	1.4736	NaN	1	1	Median	1.1762	1.435	8.9195	2	2	Median	1.2901	1.2789	89.133	2	2	Median	1.5301	1.6185	35.32	3	3	Median	413430000	174270000	239160000	47042000	13698000	33344000	115730000	52931000	62797000	118770000	47374000	71392000	131890000	60268000	71623000	38276	5323	36006	234583;234584;234585;234586;234587;234588;234589;234590;234591;234592	315308;315309;315310;315311;315312;315313;315314;315315;315316;315317;315318	315312			11	
NFEDVAFDEK	1	Unmodified	1212.5299	0.52988294	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.69	8	6				1	2			5	5	4	3	54.827	52.265	2	8.5355E-07	47430	160511_QHF_FH_JSI11i_1	123.75	90.371			0.88291	1.0048	101.17	16	16	Median	1.1907	0.98515	103.95	4	4	Median	1.0105	1.2026	105.61	5	5	Median	1.2115	1.2304	124.45	4	4	Median	0.77142	0.83962	120.2	3	3	Median	10976000000	4834600000	6141200000	2952600000	1362700000	1589900000	3125700000	1625700000	1500000000	2851500000	1161800000	1689700000	2046100000	684400000	1361700000	38277	867	36007	234593;234594;234595;234596;234597;234598;234599;234600;234601;234602;234603;234604;234605;234606;234607;234608;234609	315319;315320;315321;315322;315323;315324;315325;315326;315327;315328;315329;315330;315331;315332;315333;315334;315335;315336;315337;315338	315320			20	
NFEDVAFDEKK	2	Unmodified	1340.6248	0.62484596	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	3.24		14						1		3	4	5	3	44.163	42.575	2;3	4.0796E-05	36464	160511_QHF_FH_JSI12i_2	133.81	120.45			0.4266	0.36407	120.86	15	15	Median	0.4266	0.36407	92.519	3	3	Median	0.57434	0.70077	151.76	4	4	Median	2.2561	2.3175	124.84	5	5	Median	0.28763	0.3228	147.29	3	3	Median	3491200000	1929100000	1562100000	531750000	269780000	261970000	994310000	662530000	331780000	1245600000	627640000	618010000	719470000	369150000	350320000	38278	867	36008	234610;234611;234612;234613;234614;234615;234616;234617;234618;234619;234620;234621;234622;234623;234624	315339;315340;315341;315342;315343;315344;315345;315346;315347;315348;315349;315350;315351;315352;315353	315340			15	
NFEESRDGR	0	Unmodified	1108.4897	0.48974946	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		2	2								2		2	7.7261	7.5376	2;3	0.0075276	5065	160511_QHF_FH_JSI12i_3	70.525	53.285			0.70012	0.77759	16.216	4	0	Median	NaN	NaN	NaN	0	0	Median	0.6302	0.78204	22.456	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76111	0.77759	16.86	2	0	Median	204130000	122870000	81260000	0	0	0	127220000	78922000	48298000	0	0	0	76905000	43943000	32962000	38279	587	36009	234625;234626;234627;234628	315354;315355	315355			2	
NFEHLNSDFDR	0	Unmodified	1392.6058	0.60584185	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	40.721	39.958	2;3	0.0028142	34155	160511_QHF_FH_JSI11i_2	45.28	40.386			1.7638	1.8612	81.395	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85128	0.86202	108.85	2	2	Median	1.2699	1.3634	NaN	1	1	Median	61344000	25590000	35754000	0	0	0	0	0	0	48604000	22915000	25689000	12739000	2674900	10064000	38280	1616	36010	234629;234630;234631	315356;315357;315358	315357			3	
NFELMEAEK	1	Unmodified	1109.5063	0.50631073	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.018	50.491	2	0.022227	43562	160511_QHF_FH_JSI11i_2	43.77	20.341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38281	533	36011	234632	315359	315359			1	
NFESLSEAFSVASAAAVLSHNR	0	Unmodified	2306.1291	0.12912328	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1	1	2	1	1	99.585	97.775	3	5.2956E-86	90355	160511_QHF_FH_JSI11i_3	242.11	215.27			0.84429	0.90517	28.839	5	1	Median	0.68388	0.57481	NaN	1	1	Median	0.88919	1.0627	22.69	2	0	Median	1.1334	1.0445	NaN	1	0	Median	0.84429	0.85323	NaN	1	0	Median	2493100000	1398700000	1094400000	169280000	116160000	53121000	901130000	496610000	404520000	753820000	419480000	334340000	668870000	366450000	302410000	38282	817	36012	234633;234634;234635;234636;234637	315360;315361;315362;315363;315364;315365;315366	315360			7	
NFEWVAER	0	Unmodified	1049.493	0.49304393	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	53.668	52.829	2	0.0020515	45625	160511_QHF_FH_JSI11i_2	92.491	75.105			1.3865	1.5717	48.476	4	4	Median	NaN	NaN	NaN	0	0	Median	1.1372	1.3917	NaN	1	1	Median	2.0683	2.1458	76.054	2	2	Median	1.5948	1.775	NaN	1	1	Median	2494600000	1050500000	1444100000	0	0	0	581740000	267950000	313780000	1382700000	567210000	815470000	530160000	215340000	314820000	38283	1206	36013	234638;234639;234640;234641	315367;315368;315369;315370	315369			4	
NFEWVAERVELLLK	1	Unmodified	1744.9512	0.9512059	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			96.604	89.21	3	0.00015545	52594	160513_QHF_FH_JSI10Kac_6	111.83	63.719			1.1668	1.3746	384.54	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1668	1.3746	384.54	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	511410000	253330000	258080000	107890000	43543000	64350000	403520000	209790000	193730000	0	0	0	0	0	0	38284	1206	36014	234642;234643;234644;234645	315371;315372;315373;315374	315374			4	
NFFEPTLLCNVTQDMLCTHEETFGPLAPVIK	1	Unmodified	3620.7353	0.73534775	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	72.006	71.612	3	0.052662	64904	160511_QHF_FH_JSI10i_1	9.8828	7.9531			0.82654	0.90685	9.6369	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82181	0.9708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8313	0.84711	NaN	1	0	Median	72877000	33734000	39143000	0	0	0	45981000	16943000	29038000	0	0	0	26896000	16791000	10105000	38285	1746	36015	234646;234647	315375	315375			1	
NFFLSKIR	1	Acetyl (K)	1065.5971	0.59711507	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.316	69.002	2	0.039699	37751	160513_QHF_FH_JSI11Kac_6	58.981	32.597			0.0913	0.088297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0913	0.088297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8998700	8489800	508910	0	0	0	0	0	0	8998700	8489800	508910	0	0	0	38286	5644	36016	234648	315376	315376			1	
NFFLTNR	0	Unmodified	910.4661	0.4661009	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	1	3	48.836	47.952	2	0.0032734	40987	160511_QHF_FH_JSI12i_2	97.068	66.882			0.55219	0.61417	77.467	7	7	Median	0.95215	0.81627	95.289	2	2	Median	0.65938	0.80028	95.16	2	2	Median	0.47609	0.48665	NaN	1	1	Median	1.2229	1.2947	105.47	2	2	Median	1363200000	694970000	668220000	295410000	129280000	166130000	486590000	284970000	201620000	287070000	159300000	127760000	294120000	121410000	172710000	38287	1122	36017	234649;234650;234651;234652;234653;234654;234655;234656	315377;315378;315379;315380;315381;315382;315383;315384	315378			8	
NFFNELSHK	1	Unmodified	1134.5458	0.54580778	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	45.823	44.544	2	0.0052163	38113	160511_QHF_FH_JSI12i_2	64.42	57.971			0.48746	0.52168	106.69	3	3	Median	0.34744	0.3037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0248	1.1138	107.27	2	2	Median	97254000	65323000	31931000	18819000	15653000	3165500	0	0	0	0	0	0	78435000	49670000	28765000	38288	2605	36018	234657;234658;234659	315385;315386;315387	315385			3	
NFFQQTTTSFQNMAFQDHPEK	1	Unmodified	2545.1332	0.13322238	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			79.748	79.042	3	0.020046	70340	160511_QHF_FH_JSI10i_2	28.178	20.732			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38289	3811	36019	234660	315388	315388			1	
NFFTRYDYEEVEAEGANK	1	Unmodified	2180.9651	0.96507764	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	3	1	1	62.321	61.58	3	1.4664E-11	54390	160511_QHF_FH_JSI10i_2	164.93	155.18			0.66144	0.71587	64.726	6	4	Median	1.3853	1.1606	NaN	1	0	Median	0.81559	0.9525	73.269	3	2	Median	0.53644	0.50081	NaN	1	1	Median	0.43935	0.41467	NaN	1	1	Median	379950000	221780000	158170000	74243000	31824000	42419000	179250000	99604000	79644000	95076000	63239000	31837000	31383000	27114000	4268200	38290	1460	36020	234661;234662;234663;234664;234665;234666	315389;315390;315391;315392;315393;315394;315395;315396	315395			8	
NFFYIISPGVTK	1	Unmodified	1384.7391	0.73908786	2295	Q10472	GALNT1	Polypeptide N-acetylgalactosaminyltransferase 1;Polypeptide N-acetylgalactosaminyltransferase 1 soluble form	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	86.146	77.021	2	0.00069081	42765	160513_QHF_FH_JSI11Kac_6	87.001	67.73			0.13917	0.13324	54.735	3	3	Median	0.089796	0.077169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13917	0.13324	NaN	1	1	Median	0.21831	0.2306	NaN	1	1	Median	1466800000	1335800000	130980000	573500000	523420000	50086000	0	0	0	626970000	572110000	54863000	266330000	240300000	26033000	38291	2295	36021	234667;234668;234669	315397;315398;315399	315397			3	
NFGADTTK	1	Unmodified	852.39775	0.39774656	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.942	11.544	2	0.027434	9394	160511_QHF_FH_JSI12i_1	51.346	30.864			0.90833	0.95413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90833	0.95413	NaN	1	1	Median	77486000	40127000	37360000	0	0	0	0	0	0	0	0	0	77486000	40127000	37360000	38292	4598	36022	234670	315400	315400			1	
NFGASLLLPGLK	1	Unmodified	1228.718	0.71795849	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	91.795	91.141	2	0.00067622	80005	160511_QHF_FH_JSI11i_2	80.706	61.612			0.79452	0.82496	70.693	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3383	1.36	NaN	1	1	Median	0.47167	0.50043	NaN	1	1	Median	37575000	20945000	16630000	0	0	0	0	0	0	23462000	13213000	10250000	14113000	7732700	6380500	38293	3844	36023	234671;234672	315401;315402	315402			2	
NFGDQPDIR	0	Unmodified	1060.4938	0.49377221	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	31.059	30.299	2	0.00018053	26108	160511_QHF_FH_JSI9i_2	86.67	69.894			0.91678	0.93627	8.966	8	0	Median	1.1403	0.98349	6.335	2	0	Median	0.79207	0.9339	6.9771	2	0	Median	1.0218	1.0076	11.008	2	0	Median	0.78521	0.86026	7.6983	2	0	Median	797720000	411820000	385890000	158340000	81822000	76514000	223040000	130860000	92179000	228400000	109200000	119200000	187950000	89947000	97999000	38294	2665	36024	234673;234674;234675;234676;234677;234678;234679;234680	315403;315404;315405;315406;315407;315408;315409;315410;315411;315412;315413;315414;315415;315416;315417;315418;315419	315414			17	
NFGEDMDDER	0	Unmodified	1226.451	0.4509807	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0		By MS/MS			1	0	1										1			26.602	26.3	2	0.040549	23230	160511_QHF_FH_JSI10i_1	45.161	39.058			1.9276	2.2507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9276	2.2507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47841000	17363000	30478000	0	0	0	47841000	17363000	30478000	0	0	0	0	0	0	38295	1009;4688	36025	234681	315420	315420			1	
NFGEDMDDERLK	1	Unmodified	1467.63	0.63000769	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.583	6	9	1							3	3	5	5	37.994	37.253	2;3	3.8158E-06	31667	160511_QHF_FH_JSI11i_2	101.39	94.351			0.89892	0.88569	23.368	14	1	Median	0.90457	0.74399	38.091	3	0	Plateau	0.89787	1.0837	6.1363	3	0	Median	0.94673	0.90722	23.242	5	0	Median	0.78125	0.86183	12.489	3	1	Plateau	4415200000	2126600000	2288500000	522240000	224780000	297460000	1080900000	580060000	500870000	1903500000	891930000	1011600000	908460000	429860000	478610000	38296	1009;4688	36026	234682;234683;234684;234685;234686;234687;234688;234689;234690;234691;234692;234693;234694;234695;234696;234697	315421;315422;315423;315424;315425;315426;315427;315428;315429;315430;315431;315432;315433;315434;315435;315436;315437;315438;315439;315440;315441;315442;315443;315444;315445;315446;315447;315448;315449;315450;315451;315452;315453;315454;315455;315456;315457;315458	315448			38	
NFGEEVDDESLK	1	Unmodified	1380.6045	0.60450445	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	48.267	43.882	2	9.3058E-06	39686	160511_QHF_FH_JSI12i_1	119.27	109.32			1.1997	1.43	47.904	7	3	Median	2.3302	1.927	NaN	1	1	Median	1.5086	1.8046	32.911	2	1	Median	1.8933	1.8494	90.389	2	1	Median	0.98522	1.0597	9.0276	2	0	Median	2473900000	995400000	1478500000	489230000	171280000	317950000	605590000	258340000	347250000	597710000	187030000	410680000	781380000	378750000	402630000	38297	2385	36027	234698;234699;234700;234701;234702;234703;234704	315459;315460;315461;315462;315463;315464;315465;315466;315467;315468	315460			10	
NFGGGNTAWEEK	1	Unmodified	1308.5735	0.57347909	3158	Q6UXH1	CRELD2	Cysteine-rich with EGF-like domain protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	37.04	36.11	2	1.4213E-05	31740	160511_QHF_FH_JSI10i_2	117.52	101.64			0.9075	0.88386	96.699	6	6	Median	1.0727	0.91311	NaN	1	1	Median	0.3834	0.4691	NaN	1	1	Median	1.5629	1.5877	176.67	2	2	Median	1.2193	1.3634	65.903	2	2	Median	547610000	250370000	297240000	60358000	30098000	30260000	76641000	53260000	23381000	252170000	99203000	152960000	158450000	67814000	90636000	38298	3158	36028	234705;234706;234707;234708;234709;234710	315469;315470;315471;315472;315473;315474	315474			6	
NFGIGQDIQPK	1	Unmodified	1215.6248	0.62478638	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.16	5	4	4			3	3	5		5	6	6	7	54.519	49.315	2;3	2.8912E-10	42284	160511_QHF_FH_JSI12i_2	139.98	131.02			0.91463	0.98283	43.234	24	8	Median	1.3148	1.083	60.805	5	2	Median	0.9795	1.1284	24.49	6	2	Median	0.85925	0.83819	38.805	6	1	Median	0.71763	0.76707	45.561	7	3	Median	15689000000	8349500000	7339100000	2628000000	1119800000	1508200000	3855900000	2111900000	1744000000	5004200000	2792600000	2211600000	4200600000	2325300000	1875300000	38299	2007	36029	234711;234712;234713;234714;234715;234716;234717;234718;234719;234720;234721;234722;234723;234724;234725;234726;234727;234728;234729;234730;234731;234732;234733;234734	315475;315476;315477;315478;315479;315480;315481;315482;315483;315484;315485;315486;315487;315488;315489;315490;315491;315492;315493;315494;315495;315496;315497;315498;315499;315500;315501;315502;315503;315504;315505;315506;315507;315508;315509;315510;315511;315512;315513;315514;315515;315516	315480			42	
NFGIWLR	0	Unmodified	904.49192	0.49192172	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.99		8	6						5	5	5	4	5	75.041	72.088	2	0.0024164	38768	160513_QHF_FH_JSI10Kac_6	103.29	69.433			0.96498	1.1257	94.441	19	16	Median	2.0093	1.7151	98.847	5	4	Median	0.96498	1.1468	104.66	5	4	Median	0.77305	0.75826	84.915	4	3	Median	0.49587	0.52477	111.35	5	5	Median	8921400000	4211400000	4710000000	1785300000	732240000	1053000000	3281500000	1531200000	1750300000	1739600000	845460000	894140000	2115000000	1102500000	1012500000	38300	2190	36030	234735;234736;234737;234738;234739;234740;234741;234742;234743;234744;234745;234746;234747;234748;234749;234750;234751;234752;234753	315517;315518;315519;315520;315521;315522;315523;315524;315525;315526;315527;315528;315529;315530;315531;315532;315533;315534;315535;315536;315537;315538;315539;315540;315541;315542;315543;315544;315545;315546;315547;315548;315549;315550	315550			34	
NFGLYNER	0	Unmodified	1011.4774	0.47739386	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	38.049	37.014	2	0.0025514	31406	160511_QHF_FH_JSI12i_2	87.251	66.696			0.98702	1.1046	63.634	6	4	Median	1.2135	1.0486	82.328	2	2	Median	0.77292	0.96175	NaN	1	0	Median	1.2604	1.2687	NaN	1	0	Median	0.9876	1.0999	114.24	2	2	Median	1141200000	582610000	558560000	246390000	122520000	123870000	213330000	108080000	105250000	342030000	180520000	161510000	339420000	171490000	167930000	38301	1111	36031	234754;234755;234756;234757;234758;234759	315551;315552;315553;315554;315555;315556;315557;315558	315551			8	
NFGPKGFGFGQGAGALVHSE	1	Acetyl (K)	2017.9646	0.96462413	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	83.692	74.313	2	2.3131E-199	41011	160513_QHF_FH_JSI11Kac_6	310.36	288.8			0.67888	0.66279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67888	0.66279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	234160000	197480000	36678000	0	0	0	0	0	0	92055000	55377000	36678000	142100000	142100000	0	38302	1191	36032	234760;234761	315559;315560;315561	315560	1045		3	
NFGQQPIFVFLLSTR	0	Unmodified	1765.9515	0.95154025	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.647	90.926	2	0.0011969	52759	160513_QHF_FH_JSI10Kac_6	119.39	95.636			1.4015	1.6595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4015	1.6595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128340000	35192000	93145000	0	0	0	128340000	35192000	93145000	0	0	0	0	0	0	38303	3359	36033	234762	315562	315562			1	
NFGSYVTHETK	1	Unmodified	1281.599	0.59896556	2054;4072	P63167;Q96FJ2	DYNLL1;DYNLL2	Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.38		16	7					1	10	9	10	7	8	30.165	26.61	2;3	1.1424E-07	14857	160513_QHF_FH_JSI11Kac_6	116.77	105.61			1.6509	1.5587	184.24	33	32	Median	1.5452	1.2553	163.52	9	8	Median	2.2289	2.6472	207.98	9	9	Median	2.4115	2.3304	232.97	7	7	Median	2.3798	2.4701	167.48	8	8	Median	7251000000	3542800000	3708200000	1439100000	811430000	627620000	2021000000	1118300000	902670000	1933800000	802250000	1131500000	1857200000	810820000	1046300000	38304	2054;4072	36034	234763;234764;234765;234766;234767;234768;234769;234770;234771;234772;234773;234774;234775;234776;234777;234778;234779;234780;234781;234782;234783;234784;234785;234786;234787;234788;234789;234790;234791;234792;234793;234794;234795;234796	315563;315564;315565;315566;315567;315568;315569;315570;315571;315572;315573;315574;315575;315576;315577;315578;315579;315580;315581;315582;315583;315584;315585;315586;315587;315588;315589;315590;315591;315592;315593;315594;315595;315596;315597;315598;315599;315600;315601;315602;315603;315604;315605;315606;315607	315576			45	
NFHQTFATWVK	1	Unmodified	1377.683	0.68296996	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	56.452	56.204	3	0.015602	48190	160511_QHF_FH_JSI12i_3	39.341	30.542			6.8787	7.0313	115.29	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.8787	7.0313	115.29	2	2	Median	116370000	19697000	96670000	0	0	0	0	0	0	0	0	0	116370000	19697000	96670000	38305	2311	36035	234797;234798	315608;315609	315608			2	
NFHVFYQLLSGASEELLNK	1	Unmodified	2208.1215	0.1215187	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	97.437	89.558	3	1.5542E-05	50521	160513_QHF_FH_JSI9Kac_6	134.33	121.86			0.42645	0.50967	246.18	2	2	Median	NaN	NaN	NaN	0	0	Median	0.42645	0.50967	246.18	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	384330000	154430000	229900000	41007000	0	41007000	243020000	154430000	88588000	58456000	0	58456000	41850000	0	41850000	38306	376	36036	234799;234800;234801;234802;234803	315610;315611;315612;315613;315614	315611			5	
NFIAQGPYENR	0	Unmodified	1307.6258	0.62584901	1189	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.271	39.311	2	7.4113E-06	33681	160511_QHF_FH_JSI11i_2	113.1	92.226			0.89266	0.81214	32.699	4	3	Median	1.1136	0.94437	NaN	1	1	Median	0.55546	0.68269	NaN	1	1	Median	0.71555	0.69843	NaN	1	1	Median	1.2306	1.3734	NaN	1	0	Median	420900000	201270000	219630000	70979000	30523000	40456000	77142000	43682000	33460000	152130000	76834000	75299000	120650000	50230000	70416000	38307	1189	36037	234804;234805;234806;234807	315615;315616;315617;315618;315619	315618			5	
NFIEGDYK	1	Unmodified	984.45526	0.45526144	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	34.753	33.968	2	0.014654	28876	160511_QHF_FH_JSI12i_2	60.59	33.065			0.34235	0.41117	57.36	5	5	Median	0.19299	0.16728	NaN	1	1	Median	0.348	0.41517	1.3687	2	2	Median	0.44301	0.42524	NaN	1	1	Median	0.11837	0.13192	NaN	1	1	Median	178560000	120320000	58235000	19427000	14216000	5211100	82694000	53491000	29203000	47753000	29569000	18184000	28682000	23046000	5636300	38308	5559	36038	234808;234809;234810;234811;234812	315620;315621;315622;315623;315624	315621			5	
NFILAADVMK	1	Unmodified	1120.5951	0.59506616	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.567	75.934	2	0.013522	66546	160511_QHF_FH_JSI11i_2	53.751	28.192			1.3025	1.3319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3025	1.3319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20669000	13116000	7553800	0	0	0	0	0	0	20669000	13116000	7553800	0	0	0	38309	2297	36039	234813	315625	315625			1	
NFILDQTNVSAAAQR	0	Unmodified	1646.8376	0.8376327	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.33	8	8	2				5	5	1	7	7	8	7	64.009	59.613	2;3	3.9377E-66	54350	160511_QHF_FH_JSI11i_1	238.01	200.29			0.8864	0.89151	26.473	28	7	Median	1.3436	1.1102	16.674	6	2	Median	0.69442	0.85317	9.5158	7	1	Median	0.98926	0.98521	38.205	8	1	Median	0.81971	0.87896	24.198	7	3	Median	6701000000	3505500000	3195500000	1280800000	484740000	796020000	1659800000	1042700000	617140000	2180300000	1157500000	1022800000	1580100000	820570000	759550000	38310	2161	36040	234814;234815;234816;234817;234818;234819;234820;234821;234822;234823;234824;234825;234826;234827;234828;234829;234830;234831;234832;234833;234834;234835;234836;234837;234838;234839;234840;234841;234842	315626;315627;315628;315629;315630;315631;315632;315633;315634;315635;315636;315637;315638;315639;315640;315641;315642;315643;315644;315645;315646;315647;315648;315649;315650;315651;315652;315653;315654;315655;315656;315657;315658;315659;315660;315661;315662;315663;315664;315665;315666;315667;315668	315627			41	
NFILDQTNVSAAAQRR	0	Unmodified	1802.9387	0.93874373	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				53.678	52.64	3	0.0022539	46156	160511_QHF_FH_JSI9i_2	42.813	32.179			1.9802	1.666	NaN	1	1	Median	1.9802	1.666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75359000	29336000	46023000	75359000	29336000	46023000	0	0	0	0	0	0	0	0	0	38311	2161	36041	234843	315669	315669			1	
NFINNPLAQADWAAK	1	Unmodified	1671.8369	0.83690442	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	3.44	3	8	4						1	2	5	6	3	81.849	81.061	2;3	4.4581E-52	70284	160511_QHF_FH_JSI12i_2	221.09	195.05			0.8094	0.86873	37.339	14	7	Median	0.94927	0.78157	35.411	2	1	Median	0.82751	1.0128	32.279	5	3	Median	0.79551	0.79442	58.689	4	3	Median	1.1235	1.2592	29.168	3	0	Plateau	3375900000	1772900000	1603000000	428630000	229960000	198670000	832690000	469890000	362800000	1297900000	741390000	556550000	816660000	331660000	485000000	38312	1436	36042	234844;234845;234846;234847;234848;234849;234850;234851;234852;234853;234854;234855;234856;234857;234858;234859	315670;315671;315672;315673;315674;315675;315676;315677;315678;315679;315680;315681;315682;315683;315684;315685;315686;315687;315688;315689;315690;315691;315692;315693;315694;315695	315674			26	
NFINNPLAQADWAAKK	2	Unmodified	1799.9319	0.93186744	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.74	70.441	3	0.017428	60996	160511_QHF_FH_JSI12i_3	33.313	15.396			1.4462	1.3488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4462	1.3488	NaN	1	0	Median	31631000	17159000	14473000	0	0	0	0	0	0	0	0	0	31631000	17159000	14473000	38313	1436	36043	234860	315696	315696			1	
NFIQAILTSLIEK	1	Unmodified	1488.8552	0.85518025	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	103.65	103.6	2	4.2055E-06	90341	160511_QHF_FH_JSI12i_3	124.1	99.312			0.65011	0.69357	23.943	2	1	Median	NaN	NaN	NaN	0	0	Median	0.69636	0.82152	NaN	1	0	Median	0.60694	0.58555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18823000	13847000	4976100	0	0	0	3800300	2173800	1626500	8472600	5123000	3349600	6550300	6550300	0	38314	5618	36044	234861;234862;234863	315697;315698;315699	315699			3	
NFIQYFHK	1	Unmodified	1095.5502	0.55016488	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.15		9	14						5	6	9	6	7	56.128	53.644	2;3	0.00099908	45189	160511_QHF_FH_JSI10i_3	75.738	44.244			0.18391	0.17683	203.66	27	26	Median	1.0577	0.89024	198.61	6	6	Median	0.15827	0.18591	237.07	8	8	Median	0.16775	0.16231	225.16	6	5	Median	0.15346	0.1681	192.26	7	7	Median	7734100000	4283800000	3450300000	1266000000	593090000	672870000	1594800000	930020000	664750000	1859100000	1064000000	795070000	3014200000	1696700000	1317600000	38315	5494	36045	234864;234865;234866;234867;234868;234869;234870;234871;234872;234873;234874;234875;234876;234877;234878;234879;234880;234881;234882;234883;234884;234885;234886;234887;234888;234889;234890;234891	315700;315701;315702;315703;315704;315705;315706;315707;315708;315709;315710;315711;315712;315713;315714;315715;315716;315717;315718;315719;315720;315721;315722;315723;315724;315725;315726;315727;315728;315729;315730;315731;315732;315733;315734;315735	315710			36	
NFITAEELR	0	Unmodified	1091.5611	0.56112349	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.25	5.63		3						1		1		2	1	53.962	50.494	2	0.00046381	43570	160511_QHF_FH_JSI11i_2	80.219	66.571			1.2064	1.2534	28.659	4	1	Median	0.91256	0.77991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4299	1.4222	7.6146	2	1	Median	1.0607	1.1658	NaN	1	0	Median	679410000	323330000	356080000	153260000	93273000	59985000	0	0	0	345630000	139990000	205650000	180520000	90072000	90446000	38316	361	36046	234892;234893;234894;234895	315736;315737;315738;315739;315740;315741	315739			6	
NFITAEELRR	0	Unmodified	1247.6622	0.66223452	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.24		10	6						1	3	4	5	5	41.996	40.778	2;3	1.9871E-06	34750	160511_QHF_FH_JSI12i_3	116.52	76.971			0.83603	0.84933	58.327	16	11	Median	0.72671	0.62452	81.57	3	3	Median	0.50126	0.59008	18.558	3	2	Median	1.5892	1.4735	45.716	5	4	Median	0.80086	0.8968	22.032	5	2	Median	2753100000	1366300000	1386800000	323190000	223190000	100010000	372860000	255960000	116900000	1308800000	470510000	838280000	748300000	416640000	331670000	38317	361	36047	234896;234897;234898;234899;234900;234901;234902;234903;234904;234905;234906;234907;234908;234909;234910;234911;234912	315742;315743;315744;315745;315746;315747;315748;315749;315750;315751;315752;315753;315754;315755;315756;315757;315758;315759;315760;315761;315762	315761			21	
NFIVWLEDQK	1	Unmodified	1290.6608	0.66083754	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		6							3	1	3	2	3	91.19	88.198	2	2.6967E-09	42061	160513_QHF_FH_JSI12Kac_6	130.66	96.124			0.18423	0.21823	137.13	9	9	Median	0.12025	0.10307	NaN	1	1	Median	0.18423	0.21823	119.15	3	3	Median	0.5578	0.56019	242.26	2	2	Median	0.32159	0.3395	146.69	3	3	Median	766980000	507040000	259940000	53979000	49273000	4706100	250120000	183360000	66755000	201890000	98966000	102920000	261000000	175440000	85560000	38318	5486	36048	234913;234914;234915;234916;234917;234918;234919;234920;234921	315763;315764;315765;315766;315767;315768;315769;315770;315771;315772;315773	315772			11	
NFKPVVYHGVNLDQTVK	2	Unmodified	1957.0421	0.042146171	2816	Q3KRA6	C2orf76	UPF0538 protein C2orf76	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		55.295	54.049	3	2.1299E-06	44542	160511_QHF_FH_JSI9i_3	110.38	100.19			1.2982	1.1485	97.535	5	4	Median	0.96776	0.78926	53.049	2	2	Median	0.64135	0.73492	97.656	2	1	Median	4.8032	4.5644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	196110000	84120000	111990000	82606000	35801000	46805000	77289000	43132000	34156000	36212000	5186300	31025000	0	0	0	38319	2816	36049	234922;234923;234924;234925;234926	315774;315775;315776;315777;315778	315778			5	
NFLGEKYIR	1	Acetyl (K)	1180.6241	0.6240581	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	1	2	2	2	69.841	60.288	2	2.7738E-05	33142	160513_QHF_FH_JSI10Kac_6	106.42	61.286			0.34174	0.33926	96.784	7	3	Median	0.89628	0.76252	NaN	1	0	Median	0.5165	0.60982	205.04	2	2	Median	0.26968	0.25909	30.58	2	0	Median	0.45347	0.48148	49.514	2	1	Median	247870000	175740000	72136000	3695600	1458300	2237300	43395000	26353000	17042000	177700000	136980000	40723000	23083000	10949000	12133000	38320	1398	36050	234927;234928;234929;234930;234931;234932;234933	315779;315780;315781;315782;315783;315784	315784	1358		6	
NFLHLTDK	1	Unmodified	986.51853	0.5185304	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.322	38.87	3	0.059824	33305	160511_QHF_FH_JSI11i_2	22.086	6.424			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7238900	0	7238900	0	0	0	0	0	0	7238900	0	7238900	0	0	0	38321	4152	36051	234934	315785	315785			1	
NFLINYYNR	0	Unmodified	1215.6037	0.60365701	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.77		6	1						2	2	2	2	3	64.157	61.08	2	3.1742E-05	52497	160511_QHF_FH_JSI12i_2	101.64	85.44			1.1101	1.044	23.357	7	2	Median	1.234	1.044	NaN	1	0	Median	0.82296	1.0089	4.7566	2	0	Median	0.96111	0.95607	43.421	2	2	Median	1.2191	1.313	14.19	2	0	Median	720910000	362510000	358400000	65008000	27876000	37132000	259310000	143110000	116210000	289080000	146230000	142850000	107510000	45301000	62210000	38322	5687	36052	234935;234936;234937;234938;234939;234940;234941;234942;234943	315786;315787;315788;315789;315790;315791;315792;315793;315794;315795;315796	315787			11	
NFLIYVALLR	0	Unmodified	1220.7281	0.72812924	3527	Q8N4H5	TOMM5	Mitochondrial import receptor subunit TOM5 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.468	87.165	2	2.3629E-14	47549	160513_QHF_FH_JSI12Kac_6	160.11	140.33			0.099606	0.073283	21.969	3	3	Plateau	0.074416	0.064727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1049	0.099213	NaN	1	1	Median	0.069612	0.073283	NaN	1	1	Median	859110000	784310000	74798000	289750000	261140000	28611000	0	0	0	327510000	294100000	33407000	241850000	229070000	12779000	38323	3527	36053	234944;234945;234946	315797;315798;315799	315799			3	
NFLKEAK	2	Acetyl (K)	890.48617	0.48616764	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	1	0	0	1			By MS/MS		14	0							1					1		42.615	32.479	2	0.050944	19628	160513_QHF_FH_JSI11Kac_4	64.567	8.0203			56.716	56.824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56.716	56.824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5123700	319640	4804100	0	0	0	0	0	0	5123700	319640	4804100	0	0	0	38324	1807;2155	36054	234947	315800	315800			1	
NFLMNPQNGLK	1	Unmodified	1274.6441	0.64414162	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		58.11	57.415	2	9.784E-05	49679	160511_QHF_FH_JSI11i_2	109.48	91.167			1.2665	1.3934	3.6317	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1872	1.4296	NaN	1	1	Median	1.3511	1.358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159000000	79505000	79492000	0	0	0	42420000	21088000	21333000	116580000	58417000	58159000	0	0	0	38325	3791	36055	234948;234949;234950	315801;315802;315803;315804	315802			4	
NFLSQATMEIIIGMR	0	Unmodified	1722.8797	0.87969721	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.8	3	1	1								1	2	2	94.49	94.275	3	0.038987	82914	160511_QHF_FH_JSI11i_2	18.596	7.1221			1.1553	1.1814	11.79	5	0	Median	NaN	NaN	NaN	0	0	Median	0.96345	1.1281	NaN	1	0	Median	1.2056	1.2067	9.3969	2	0	Median	1.2535	1.3273	16.467	2	0	Median	301410000	130720000	170700000	0	0	0	83638000	33964000	49674000	149980000	64923000	85053000	67800000	31830000	35970000	38326	4750	36056	234951;234952;234953;234954;234955	315805	315805			1	
NFLSTAESRTAQAAASGTTLLPQFR	0	Unmodified	2637.3511	0.35107772	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	1		By matching	By MS/MS	By matching	3	0			3								1	1	1	102.63	102.59	4	0.056811	91794	160511_QHF_FH_JSI11i_3	14.408	11.309			1.0375	1.0122	7.5364	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0334	1.1742	NaN	1	0	Median	1.0375	1.0122	NaN	1	0	Median	1.0442	1.0661	NaN	1	0	Median	756920000	364160000	392760000	0	0	0	38932000	17380000	21553000	530330000	258650000	271680000	187660000	88135000	99523000	38327	2791	36057	234956;234957;234958	315806	315806			1	
NFLSTPQFLYR	0	Unmodified	1384.7139	0.71393574	4447	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.475	80.588	2	5.9825E-06	70754	160511_QHF_FH_JSI11i_2	114.51	103.99			1.4502	1.5376	13.933	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3753	1.3934	NaN	1	1	Median	1.529	1.6969	NaN	1	1	Median	396270000	187640000	208620000	0	0	0	0	0	0	256100000	116830000	139270000	140170000	70817000	69354000	38328	4447	36058	234959;234960	315807;315808	315808			2	
NFLVEEEQR	0	Unmodified	1162.5619	0.56185177	1160	P19474	TRIM21	E3 ubiquitin-protein ligase TRIM21	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.901	38.45	2	0.020579	32912	160511_QHF_FH_JSI11i_2	44.203	29.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38329	1160	36059	234961	315809	315809			1	
NFLVFQGAVESIAMK	1	Unmodified	1652.8596	0.8596137	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	1	2	2	97.401	92.727	2	2.0209E-22	89156	160511_QHF_FH_JSI11i_2	182.71	165.35			0.62996	0.65654	47.444	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53631	0.5386	NaN	1	0	Median	1.0441	1.129	29.155	2	1	Median	666450000	436370000	230090000	25427000	25427000	0	113050000	113050000	0	279070000	153380000	125690000	248910000	144510000	104400000	38330	2560	36060	234962;234963;234964;234965;234966;234967	315810;315811;315812;315813;315814;315815;315816	315813			7	
NFLVFQGAVESIAMK	1	Oxidation (M)	1668.8545	0.85452832	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	90.742	81.299	3	0.031416	43742	160513_QHF_FH_JSI12Kac_6	34.191	23.086			0.83747	0.85019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83747	0.85019	NaN	1	0	Median	19823000	10347000	9475600	0	0	0	0	0	0	0	0	0	19823000	10347000	9475600	38331	2560	36060	234968	315817	315817			0	
NFLVLAAHR	0	Unmodified	1039.5927	0.59269839	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		59.462	50.376	3	0.0062738	27553	160513_QHF_FH_JSI10Kac_6	51.949	38.277			4.5163	4.759	78.878	2	2	Median	NaN	NaN	NaN	0	0	Median	2.3051	2.7245	NaN	1	1	Median	8.8484	8.3127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40475000	6845800	33629000	0	0	0	30314000	6396300	23918000	10160000	449440	9710900	0	0	0	38332	680	36061	234969;234970	315818;315819	315819			2	
NFLYAWCGK	1	Unmodified	1157.5328	0.53280025	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.64	6.97		5							6	1	3	4	3	71.705	66.468	2	0.00043609	36341	160513_QHF_FH_JSI10Kac_6	96.492	89.298			1.0564	0.95852	108.43	11	9	Median	1.0564	0.90019	NaN	1	0	Median	0.80465	0.95852	105.45	3	2	Median	0.82156	0.78084	136.45	4	4	Median	1.6188	1.7232	127.25	3	3	Median	1628200000	807200000	820980000	91853000	55624000	36228000	443650000	265880000	177780000	733490000	338410000	395080000	359180000	147280000	211900000	38333	2265	36062	234971;234972;234973;234974;234975;234976;234977;234978;234979;234980;234981	315820;315821;315822;315823;315824;315825;315826;315827;315828;315829;315830;315831;315832	315832			13	
NFLYDIAGCSGTFTVQNR	0	Unmodified	2061.9578	0.95782419	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	87.928	87.167	2;3	2.6877E-08	75335	160511_QHF_FH_JSI12i_2	150.39	128.76			1.1287	1.155	23.93	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94318	0.9334	5.3318	2	2	Median	1.3018	1.4063	3.0437	2	1	Median	132940000	64973000	67970000	0	0	0	0	0	0	73483000	35705000	37778000	59460000	29268000	30192000	38334	1693	36063	234982;234983;234984;234985	315833;315834;315835;315836;315837;315838	315834			6	
NFMIDTYR	0	Unmodified	1058.4855	0.48551571	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	53.025	51.867	2	0.010853	45850	160511_QHF_FH_JSI10i_2	62.107	45.905			0.93938	1.1071	8.7443	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83535	1.0407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0564	1.1777	NaN	1	0	Median	344760000	175480000	169280000	0	0	0	174380000	94167000	80210000	0	0	0	170380000	81311000	89071000	38335	3685;3907	36064	234986;234987	315839;315840;315841	315841			3	
NFMLHYEFPPYATNEIGK	1	Unmodified	2170.0194	0.019361819	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		86.374	85.791	3	0.0043978	75526	160511_QHF_FH_JSI11i_2	40.432	26.122			0.59095	0.64034	10.428	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50377	0.59483	NaN	1	1	Median	0.69322	0.68935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59908000	39597000	20311000	0	0	0	17110000	10596000	6514000	42798000	29001000	13797000	0	0	0	38336	3709	36065	234988;234989	315842;315843	315842			2	
NFNETFLK	1	Unmodified	1011.5025	0.50254598	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.904	51.519	2	0.010658	44032	160511_QHF_FH_JSI12i_2	63.48	44.749			1.957	2.1712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.957	2.1712	NaN	1	1	Median	175500000	99620000	75881000	0	0	0	0	0	0	0	0	0	175500000	99620000	75881000	38337	4518	36066	234990	315844	315844			1	
NFNETFLKR	1	Acetyl (K)	1209.6142	0.6142217	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.502	55.836	2	0.034797	30269	160513_QHF_FH_JSI11Kac_6	58.676	41.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38338	4518	36067	234991	315845	315845			1	
NFNIHGTNK	1	Unmodified	1043.5148	0.514842	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	1	2	3	15.029	14.777	2;3	0.0017318	12375	160511_QHF_FH_JSI9i_2	76.605	55.451			1.9566	1.7873	87.965	8	7	Median	0.78221	0.66646	110.24	2	2	Median	0.46345	0.57428	NaN	1	0	Median	2.8737	2.7291	30.591	2	2	Median	3.1389	3.2261	76.667	3	3	Plateau	811460000	357770000	453690000	78944000	40171000	38773000	48611000	36825000	11786000	200590000	78340000	122250000	483320000	202430000	280890000	38339	1081	36068	234992;234993;234994;234995;234996;234997;234998;234999	315846;315847;315848;315849;315850;315851;315852;315853	315849			8	
NFNLPMCK	1	Unmodified	1022.4678	0.46775715	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	53.16	52.205	2	0.0017531	45005	160511_QHF_FH_JSI11i_2	85.265	64.64			1.3	1.3776	42.08	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0043	1.023	NaN	1	0	Median	1.6827	1.855	NaN	1	0	Median	403090000	148980000	254110000	0	0	0	0	0	0	182320000	83315000	99000000	220770000	65666000	155110000	38340	1865	36069	235000;235001	315854;315855;315856;315857	315856			4	
NFNNLYGTK	1	Unmodified	1069.5193	0.51925868	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.098	35.664	2	0.00095335	30414	160511_QHF_FH_JSI11i_2	76.221	49.838			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38341	2494	36070	235002	315858	315858			1	
NFNPTVNYILSISASSGLIALLSTGSK	1	Unmodified	2766.4804	0.48036056	5439	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	0	0	0	0				By MS/MS	11	0				2									2	101.5	92.492	2;3	0.00065797	35321	160513_QHF_FH_JSI12Kacf_1	55.063	47.53			2.933	3.1429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.933	3.1429	NaN	1	1	Median	13362000	2971500	10391000	0	0	0	0	0	0	0	0	0	13362000	2971500	10391000	38342	5439	36071	235003;235004	315859;315860	315859			2	
NFPALLSTGEFLK	1	Unmodified	1435.7711	0.77111627	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0	By MS/MS				2	0		1								1				98.538	98.433	2	0.025782	86418	160511_QHF_FH_JSI9i_2	48.741	33.481			2.4438	2.0987	NaN	1	1	Median	2.4438	2.0987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6900200	1903500	4996700	6900200	1903500	4996700	0	0	0	0	0	0	0	0	0	38343	5221	36072	235005	315861	315861			1	
NFPFWLWIESILELIK	1	Unmodified	2047.1183	0.11827123	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.63	100.91	3	1.716E-11	59800	160513_QHF_FH_JSI10Kac_6	126.88	93.953			0.84423	0.99803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84423	0.99803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129300000	77318000	51981000	0	0	0	129300000	77318000	51981000	0	0	0	0	0	0	38344	1528	36073	235006	315862;315863	315862			2	
NFPLQFGR	0	Unmodified	977.5083	0.50830006	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.852	60.941	2	0.0057109	53928	160511_QHF_FH_JSI10i_2	64.803	28.923			1.1016	1.1776	8.8969	4	0	Median	1.3572	1.2152	NaN	1	0	Median	1.1219	1.3638	NaN	1	0	Median	1.0817	1.1198	NaN	1	0	Median	1.0236	1.1411	NaN	1	0	Median	226940000	107610000	119330000	36216000	15705000	20511000	51970000	25399000	26571000	92374000	41762000	50612000	46382000	24741000	21641000	38345	3032	36074	235007;235008;235009;235010	315864;315865;315866	315866			3	
NFPNAIEHTLQWAR	0	Unmodified	1695.8481	0.84813781	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	4	2	5	5	76.034	73.827	2;3	3.7696E-07	66632	160511_QHF_FH_JSI11i_3	88.441	64.59			0.58521	0.65227	61.615	15	10	Median	1.5156	1.3003	58.308	4	2	Median	0.39049	0.46224	48.701	2	2	Median	0.58148	0.56975	52.259	4	2	Median	0.58118	0.6169	58.485	5	4	Median	1081800000	662760000	419020000	193970000	83487000	110480000	134960000	103700000	31266000	390670000	249440000	141230000	362170000	226140000	136040000	38346	1208	36075	235011;235012;235013;235014;235015;235016;235017;235018;235019;235020;235021;235022;235023;235024;235025;235026	315867;315868;315869;315870;315871;315872;315873;315874;315875;315876;315877;315878;315879;315880;315881;315882;315883	315871			17	
NFPNEFAK	1	Unmodified	965.46068	0.46068117	343	O43583	DENR	Density-regulated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.4	0.49	3	2									2	2	1	39.148	38.606	2	0.0087012	34642	160511_QHF_FH_JSI11i_1	56.721	37.916			1.006	1.026	12.903	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2578	2.2192	2	0	Median	0.99572	0.99055	4.9661	2	0	Median	0.99447	1.0193	NaN	1	0	Median	670370000	293430000	376940000	0	0	0	235130000	119380000	115750000	365040000	145540000	219500000	70197000	28506000	41691000	38347	343	36076	235027;235028;235029;235030;235031	315884;315885;315886	315884			3	
NFPQTALVSFATTGEK	1	Unmodified	1709.8625	0.86245047	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	3.53	2	10						1		2	4	5	2	80.87	79.369	2;3	9.2261E-07	70504	160511_QHF_FH_JSI11i_2	88.087	73.055			0.84438	0.93298	31.023	12	4	Median	0.85416	0.7446	9.641	2	1	Median	0.58775	0.71138	39.473	4	2	Median	0.99704	0.99835	32.683	4	1	Median	0.90589	1.0146	7.0763	2	0	Median	348390000	186700000	161690000	62208000	31502000	30706000	86317000	54335000	31982000	133140000	71046000	62096000	66722000	29821000	36901000	38348	3562	36077	235032;235033;235034;235035;235036;235037;235038;235039;235040;235041;235042;235043;235044	315887;315888;315889;315890;315891;315892;315893;315894;315895;315896;315897;315898;315899;315900;315901;315902	315898			16	
NFPVGQR	0	Unmodified	816.42424	0.42423608	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			21.125	20.305	2	0.036043	17434	160511_QHF_FH_JSI10i_2	50.307	26.108			0.78428	0.97047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78428	0.97047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70133000	22532000	47600000	0	0	0	70133000	22532000	47600000	0	0	0	0	0	0	38349	2297	36078	235045	315903	315903			1	
NFQANTK	1	Unmodified	821.40317	0.40316629	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	8.6348	8.1555	2	0.014343	5935	160511_QHF_FH_JSI12i_2	67.032	31.831			2.9961	3.0337	55.694	5	5	Median	4.677	3.9061	NaN	1	1	Median	1.5666	1.9525	NaN	1	1	Median	2.9961	3.0337	NaN	1	1	Median	2.6446	2.8555	99.72	2	2	Median	1131300000	365850000	765490000	225290000	60767000	164520000	174050000	72766000	101290000	265570000	90245000	175330000	466420000	142070000	324350000	38350	587	36079	235046;235047;235048;235049;235050	315904;315905;315906;315907;315908	315905			5	
NFQLEEEEQNEAK	1	Unmodified	1606.7111	0.71109479	5653	Q9Y5A7	NUB1	NEDD8 ultimate buster 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	38.232	37.635	2	3.3545E-06	33744	160511_QHF_FH_JSI11i_1	122.7	107.73			0.75767	0.66875	57.686	4	4	Median	0.56352	0.46044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2385	1.1937	29.166	2	2	Median	0.43977	0.45772	NaN	1	1	Median	113130000	63012000	50117000	17302000	12797000	4505500	0	0	0	75992000	36394000	39598000	19834000	13821000	6012700	38351	5653	36080	235051;235052;235053;235054	315909;315910;315911;315912	315909			4	
NFQNIFPPSATLHLSNIPPSVSEEDLK	1	Unmodified	2993.5135	0.5134516	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	100.53	100.48	3;4	3.228E-49	87282	160511_QHF_FH_JSI12i_3	184.76	179.51			0.99555	1.0058	8.37	9	1	Median	1.1906	0.99973	NaN	1	0	Median	0.84291	1.0474	NaN	1	0	Median	1.0861	1.0453	9.3672	4	1	Median	0.89569	0.97187	4.4903	3	0	Plateau	3331300000	1771300000	1560000000	435370000	203890000	231480000	402560000	246540000	156020000	1301100000	660240000	640860000	1192300000	660640000	531620000	38352	1281	36081	235055;235056;235057;235058;235059;235060;235061;235062;235063	315913;315914;315915;315916;315917;315918;315919;315920;315921;315922;315923;315924;315925;315926;315927;315928;315929;315930;315931;315932;315933;315934;315935;315936;315937;315938;315939;315940;315941;315942;315943;315944;315945;315946	315943			34	
NFQPFALNHQK	1	Unmodified	1342.6782	0.67821894	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	44.456	44.218	2	3.6029E-05	37692	160511_QHF_FH_JSI12i_3	99.442	76.122			0.51607	0.52288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51607	0.52288	NaN	1	1	Median	34673000	21408000	13264000	0	0	0	0	0	0	0	0	0	34673000	21408000	13264000	38353	4779	36082	235064;235065	315947;315948	315948			2	
NFQPVIIFSFSK	1	Unmodified	1425.7656	0.76563696	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	91.17	82.496	2	1.3536E-06	44246	160513_QHF_FH_JSI12Kac_6	117.52	83.634			0.99455	1.003	28.05	6	4	Median	1.0858	0.9203	NaN	1	0	Median	0.91097	1.0931	NaN	1	0	Median	1.0246	0.96566	42.211	2	2	Median	0.97026	1.0289	44.312	2	2	Median	2226400000	1209500000	1016900000	426280000	208200000	218080000	478530000	293080000	185460000	673520000	361750000	311770000	648100000	346480000	301620000	38354	1532	36083	235066;235067;235068;235069;235070;235071	315949;315950;315951;315952;315953;315954;315955;315956;315957;315958	315955			10	
NFQWANTGAAVFGTQSVGTQSAGK	1	Unmodified	2426.1615	0.16148604	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	80.616	80.185	3	1.5707E-23	71610	160511_QHF_FH_JSI11i_3	146.17	135.19			1.1405	1.0344	9.4084	3	2	Median	1.1442	1.0344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0731	1.0324	13.305	2	2	Median	NaN	NaN	NaN	0	0	Median	158290000	74934000	83351000	47510000	21750000	25760000	0	0	0	110780000	53185000	57591000	0	0	0	38355	1685	36084	235072;235073;235074;235075	315959;315960;315961;315962	315959			4	
NFRNPLAK	1	Unmodified	958.53485	0.53484916	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.11	6.3		2	4						3	3	4	1	1	34.614	30.926	3	0.0070314	26262	160511_QHF_FH_JSI11i_3	43.808	20.788			0.95951	0.94061	61.358	9	2	Median	1.1464	0.94061	40.54	3	0	Median	0.75436	0.90654	65.712	4	2	Median	0.86023	0.79671	NaN	1	0	Median	2.6625	2.8738	NaN	1	0	Median	1371400000	769270000	602170000	407370000	227980000	179390000	845510000	483370000	362150000	114850000	57015000	57838000	3699400	902070	2797400	38356	854	36085	235076;235077;235078;235079;235080;235081;235082;235083;235084	315963;315964;315965;315966;315967;315968;315969;315970	315963			8	
NFSAGGHK	1	Unmodified	816.38785	0.38785057	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	3	3	1	5.8506	3.0294	2	0.0040128	3181	160511_QHF_FH_JSI9i_2	69.998	48.452			0.9354	0.80573	61.897	9	1	Median	0.84085	0.7174	16.422	2	0	Median	1.0629	1.3057	96.075	3	1	Median	1.1385	1.1527	38.755	3	0	Plateau	0.64019	0.70858	NaN	1	0	Median	2205900000	1020800000	1185100000	366240000	136940000	229300000	555690000	259240000	296450000	888270000	411140000	477130000	395700000	213530000	182170000	38357	5499	36086	235085;235086;235087;235088;235089;235090;235091;235092;235093	315971;315972;315973;315974;315975;315976;315977;315978;315979	315975			9	
NFSDNQLQEGK	1	Unmodified	1278.584	0.58404378	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.94	8	7	2			4	6	1		6	8	7	7	29.073	24.703	2	3.3961E-14	21670	160511_QHF_FH_JSI11i_2	141.95	119.21			1.2485	1.3016	108.58	26	22	Median	1.2205	1.0232	101.84	6	5	Median	1.0577	1.2409	111.86	8	8	Median	1.3097	1.298	152.67	5	3	Median	1.1901	1.3051	95.092	7	6	Median	25752000000	14901000000	10851000000	5587300000	2895200000	2692100000	7538800000	4670500000	2868300000	6700100000	4309400000	2390700000	5926200000	3025800000	2900400000	38358	1470	36087	235094;235095;235096;235097;235098;235099;235100;235101;235102;235103;235104;235105;235106;235107;235108;235109;235110;235111;235112;235113;235114;235115;235116;235117;235118;235119;235120;235121	315980;315981;315982;315983;315984;315985;315986;315987;315988;315989;315990;315991;315992;315993;315994;315995;315996;315997;315998;315999;316000;316001;316002;316003;316004;316005;316006;316007;316008;316009;316010;316011;316012;316013;316014;316015;316016;316017	316009			38	
NFSEIHPGMLLIGFVK	1	Unmodified	1800.9597	0.9596621	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	91.077	82.825	3	0.00024506	47969	160513_QHF_FH_JSI10Kac_6	78.285	67.015			1.4006	1.3309	121.61	7	7	Median	2.8079	2.4286	NaN	1	1	Median	0.92988	1.0846	97.136	2	2	Median	0.68143	0.65039	101.27	2	2	Median	0.55468	0.59323	230.06	2	2	Median	738830000	383720000	355110000	115100000	32672000	82432000	241850000	119840000	122010000	242650000	137010000	105640000	139240000	94200000	45035000	38359	2564	36088	235122;235123;235124;235125;235126;235127;235128	316018;316019;316020;316021;316022;316023;316024	316024			7	
NFSEVFQK	1	Unmodified	997.4869	0.48689592	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	48.437	47.454	2	0.0019068	40713	160511_QHF_FH_JSI12i_2	84.097	55.199			1.884	2.0349	165.53	8	7	Median	1.8035	1.5727	193.71	2	2	Median	1.7603	2.1301	236.34	2	2	Median	1.8504	1.8598	265.79	2	2	Median	1.884	2.1179	162.93	2	1	Median	569050000	233600000	335450000	100320000	35160000	65164000	141150000	63317000	77831000	181220000	69874000	111350000	146360000	65246000	81112000	38360	5479	36089	235129;235130;235131;235132;235133;235134;235135;235136	316025;316026;316027;316028;316029;316030;316031;316032	316025			8	
NFSGAELEGLVR	0	Unmodified	1290.6568	0.65681479	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		70.251	69.516	2	0.0002315	61305	160511_QHF_FH_JSI9i_2	78.342	58.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38361	1586	36090	235137;235138	316033;316034	316033			2	
NFSGPVPDLPEGITVAYTIPK	1	Unmodified	2214.1572	0.15723551	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	101.03	100.96	2;3	1.0797E-14	91650	160511_QHF_FH_JSI10i_1	165.45	155.1			0.7185	0.84498	18.667	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77501	0.9047	9.6583	2	0	Median	0.64042	0.62832	NaN	1	0	Median	0.70582	0.74486	18.729	2	0	Median	525210000	292580000	232630000	0	0	0	235780000	137420000	98359000	138790000	78846000	59948000	150640000	76315000	74320000	38362	4615	36091	235139;235140;235141;235142;235143	316035;316036;316037;316038;316039;316040;316041	316041			7	
NFSINSVASTYSEFAK	1	Unmodified	1763.8366	0.83662965	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		86.264	85.708	2	0.00010488	75570	160511_QHF_FH_JSI9i_2	95.401	81.495			1.1341	1.0348	11.477	2	2	Median	1.3134	1.1223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97931	0.95416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17000000	6694900	10305000	7108000	2460200	4647800	0	0	0	9891600	4234800	5656900	0	0	0	38363	351	36092	235144;235145	316042;316043;316044	316042			3	
NFSNMDDEENYSAASK	1	Unmodified	1820.7159	0.71592217	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	39.175	38.607	2	1.1132E-07	34634	160511_QHF_FH_JSI11i_1	138.42	132.93			0.62346	0.67866	60.629	6	6	Median	1.5936	1.348	NaN	1	1	Median	0.41949	0.50081	NaN	1	1	Median	0.87907	0.84316	93.732	2	2	Median	0.57628	0.60935	58.21	2	2	Median	227140000	124270000	102870000	29976000	9863700	20112000	44212000	29616000	14596000	67758000	31839000	35919000	85198000	52951000	32247000	38364	316	36093	235146;235147;235148;235149;235150;235151;235152;235153	316045;316046;316047;316048;316049;316050;316051;316052;316053	316045			9	
NFSTVDIQK	1	Unmodified	1050.5346	0.53457439	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2			1	1	4	2	41.205	38.061	2	0.0017105	32767	160511_QHF_FH_JSI11i_2	76.679	56.892			2.2606	2.3645	59.961	8	8	Median	2.9573	2.5054	NaN	1	1	Median	2.6685	3.091	NaN	1	1	Median	2.6779	2.6601	63.503	4	4	Linear	3.1342	3.3834	47.372	2	2	Median	554460000	203740000	350710000	91185000	22994000	68191000	100770000	31960000	68812000	223370000	94029000	129340000	139120000	54757000	84367000	38365	1557	36094	235154;235155;235156;235157;235158;235159;235160;235161	316054;316055;316056;316057;316058;316059;316060;316061	316061			8	
NFSVNLYK	1	Unmodified	983.50763	0.50763136	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	52.595	51.644	2	0.016562	45631	160511_QHF_FH_JSI10i_2	54.549	26.037			0.74938	0.75376	12.168	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75006	0.91902	NaN	1	0	Median	0.74938	0.75376	NaN	1	0	Median	0.65291	0.73653	NaN	1	0	Median	462020000	229650000	232370000	0	0	0	130260000	72968000	57293000	201030000	104130000	96899000	130730000	52550000	78178000	38366	5645	36095	235162;235163;235164	316062	316062			1	
NFTEVHPDYGSHIQALLDK	1	Unmodified	2183.0647	0.064732107	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.17	0.373		5	1							3	2	1		72.566	71.89	3;4	0.00013039	63641	160511_QHF_FH_JSI11i_3	67.227	51.806			0.8392	0.86939	53.709	6	4	Median	0.54607	0.47748	24.146	3	2	Plateau	0.95829	1.1733	16.676	2	1	Median	2.0292	1.9015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	307110000	132520000	174580000	57767000	32521000	25245000	103000000	54343000	48657000	146340000	45656000	100680000	0	0	0	38367	800	36096	235165;235166;235167;235168;235169;235170	316063;316064;316065;316066;316067	316063			5	
NFTKYPK	2	Acetyl (K)	938.48617	0.48616764	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.781	29.267	2	0.046203	16141	160513_QHF_FH_JSI11Kac_6	66.682	30.802			0.043143	0.042864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.043143	0.042864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7880200	7562900	317250	0	0	0	0	0	0	7880200	7562900	317250	0	0	0	38368	939	36097	235171	316068	316068			1	
NFTMDTESSVYNFEGEDYREK	1	Unmodified	2560.07	0.070012998	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	68.005	67.027	3	8.4769E-13	59043	160511_QHF_FH_JSI9i_2	115.76	100.67			0.9233	0.87365	22.651	5	1	Median	1.0278	0.87365	NaN	1	0	Median	0.69297	0.86081	NaN	1	0	Median	1.1952	1.1644	NaN	1	0	Median	0.73506	0.81153	33.871	2	1	Median	367700000	162980000	204720000	60591000	28600000	31990000	68649000	33804000	34845000	147760000	51229000	96529000	90703000	49351000	41351000	38369	403	36098	235172;235173;235174;235175;235176	316069;316070;316071;316072;316073;316074;316075;316076;316077;316078;316079;316080	316074			12	
NFTTEQVTAMLLSK	1	Unmodified	1581.8072	0.80724378	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.392	1	11	1							4	3	4	2	92.189	91.683	2;3	0.00010619	80501	160511_QHF_FH_JSI9i_2	113.69	90.777			0.94698	1.0628	62.603	13	8	Median	1.0204	0.87151	94.723	4	4	Median	0.7786	0.95006	70.394	3	2	Median	1.025	1.0062	55.315	4	2	Median	0.96424	1.0827	2.6229	2	0	Median	791190000	434550000	356630000	218940000	97689000	121250000	154400000	92166000	62234000	307190000	183650000	123540000	110650000	61051000	49598000	38370	1417	36099	235177;235178;235179;235180;235181;235182;235183;235184;235185;235186;235187;235188;235189	316081;316082;316083;316084;316085;316086;316087;316088;316089;316090;316091;316092;316093;316094;316095;316096;316097;316098;316099	316087			19	
NFVDSPIIVDITK	1	Unmodified	1459.7922	0.79224564	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	89.791	89.242	2	0.00015679	78333	160511_QHF_FH_JSI11i_2	107.18	97.171			1.5469	1.5023	49.034	6	6	Median	1.0931	0.92027	62.29	2	2	Median	1.7741	2.0946	NaN	1	1	Median	1.0986	1.1008	51.007	2	2	Median	1.5108	1.6252	NaN	1	1	Median	144920000	61519000	83400000	46388000	20529000	25860000	17140000	5609700	11530000	55530000	25001000	30529000	25862000	10381000	15481000	38371	802	36100	235190;235191;235192;235193;235194;235195	316100;316101;316102;316103;316104;316105	316103			6	
NFVELISHQQLSK	1	Unmodified	1541.8202	0.82019173	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	65.985	64.684	2	0.010383	55567	160511_QHF_FH_JSI12i_2	57.019	49.891			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7890800	0	7890800	0	0	0	0	0	0	0	0	0	7890800	0	7890800	38372	5106	36101	235196	316106	316106			1	
NFVIQGGDPTGTGTGGESYWGK	1	Unmodified	2227.0182	0.018175845	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.934	69.676	2	4.47E-07	63134	160511_QHF_FH_JSI10i_1	84.566	79.251			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38373	2392	36102	235197	316107	316107			1	
NFVSQIVAENLHPK	1	Unmodified	1594.8467	0.84674083	186	O14657	TOR1B	Torsin-1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.409	69.26	3	0.00026466	61644	160511_QHF_FH_JSI11i_3	65.805	56.275			1.0489	1.0309	48.875	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5333	1.4564	NaN	1	0	Median	0.7175	0.72964	NaN	1	1	Median	70938000	32928000	38010000	0	0	0	0	0	0	37070000	15106000	21964000	33868000	17822000	16046000	38374	186	36103	235198;235199	316108;316109;316110	316109			3	
NFVVVMVTK	1	Unmodified	1035.5787	0.57868781	1831;1830	P54727;P54725	RAD23B;RAD23A	UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.75	6.4		7	5			2		6	8	7	9	6	6	68.874	62.936	2	0.0002085	33781	160513_QHF_FH_JSI12Kac_6	93.178	72.553			0.93209	0.94339	100.59	27	25	Median	0.86902	0.70094	87.436	7	5	Median	0.71892	0.82485	100.46	8	8	Median	2.0676	1.9921	95.423	6	6	Median	1.5833	1.6289	132.78	6	6	Median	18525000000	8274300000	10251000000	3994100000	1817400000	2176600000	6411500000	2193300000	4218300000	4984100000	2550000000	2434100000	3135300000	1713600000	1421800000	38375	1831;1830	36104	235200;235201;235202;235203;235204;235205;235206;235207;235208;235209;235210;235211;235212;235213;235214;235215;235216;235217;235218;235219;235220;235221;235222;235223;235224;235225;235226;235227	316111;316112;316113;316114;316115;316116;316117;316118;316119;316120;316121;316122;316123;316124;316125;316126;316127;316128;316129;316130;316131;316132;316133;316134;316135;316136;316137;316138;316139;316140;316141;316142;316143	316139			33	
NFVVVMVTK	1	Oxidation (M)	1051.5736	0.57360243	1831;1830	P54727;P54725	RAD23B;RAD23A	UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	1.22					1	3	3	5	4	3	6	5	2	63.316	53.178	2	0.0015218	27566	160513_QHF_FH_JSI12Kac_6	81.972	62.185			1.0366	0.98396	139.85	15	6	Median	1.7491	1.5534	69.096	2	1	Median	0.9989	1.149	114.69	6	3	Median	1.0366	0.98396	219.15	5	2	Median	0.91401	0.97001	16.116	2	0	Median	2128600000	1032200000	1096400000	508140000	214610000	293530000	617540000	342050000	275490000	573780000	234320000	339460000	429100000	241200000	187900000	38376	1831;1830	36104	235228;235229;235230;235231;235232;235233;235234;235235;235236;235237;235238;235239;235240;235241;235242;235243	316144;316145;316146;316147;316148;316149;316150;316151;316152;316153;316154;316155;316156;316157;316158;316159;316160;316161;316162;316163;316164;316165;316166;316167	316166		1510;1511	24	
NFVVVMVTKPK	2	Unmodified	1260.7264	0.72641468	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.61	6.54		2	14					1	16	10	7	8	8	61.911	56.796	2;3	5.8043E-10	31309	160513_QHF_FH_JSI10Kac_6	129.7	103.19			0.67485	0.70423	125.35	33	33	Median	0.94267	0.79743	133.3	10	10	Median	0.46185	0.56253	114.73	7	7	Median	0.98343	0.93434	138.15	8	8	Median	1.3929	1.4409	134.04	8	8	Median	16055000000	7975700000	8079000000	3868900000	1953500000	1915400000	4089700000	2247200000	1842500000	4383000000	2024900000	2358100000	3713000000	1750000000	1962900000	38377	1831	36105	235244;235245;235246;235247;235248;235249;235250;235251;235252;235253;235254;235255;235256;235257;235258;235259;235260;235261;235262;235263;235264;235265;235266;235267;235268;235269;235270;235271;235272;235273;235274;235275;235276	316168;316169;316170;316171;316172;316173;316174;316175;316176;316177;316178;316179;316180;316181;316182;316183;316184;316185;316186;316187;316188;316189;316190;316191;316192;316193;316194;316195;316196;316197;316198;316199;316200	316199			33	
NFVVVMVTKPK	2	Oxidation (M)	1276.7213	0.7213293	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	3	2	1	1	56.511	46.916	2	8.9214E-09	25630	160513_QHF_FH_JSI10Kac_6	121.9	103.12			1.7967	1.5112	91.07	7	7	Median	0.53396	0.43228	86.298	3	3	Median	1.0241	1.2026	108.8	2	2	Median	2.2376	2.1362	NaN	1	1	Median	2.2717	2.3727	NaN	1	1	Median	232220000	103110000	129120000	53015000	33368000	19646000	97771000	43060000	54711000	47596000	15539000	32057000	33840000	11137000	22703000	38378	1831	36105	235277;235278;235279;235280;235281;235282;235283	316201;316202;316203;316204;316205;316206;316207	316206		1511	7	
NFVVVMVTKPK	2	Acetyl (K)	1302.737	0.73697937	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.655	70.341	2	0.00014891	38577	160513_QHF_FH_JSI11Kac_6	93.258	65.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14444000	14444000	0	0	0	0	0	0	0	14444000	14444000	0	0	0	0	38379	1831	36105	235284	316208	316208	1844		1	
NFVVVMVTKPK	2	Acetyl (K);Oxidation (M)	1318.7319	0.73189399	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		74.783	64.087	2	0.0071314	34177	160513_QHF_FH_JSI11Kac_5	62.466	52.235			0.54441	0.5316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54441	0.5316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2031000	1215800	815180	0	0	0	0	0	0	2031000	1215800	815180	0	0	0	38380	1831	36105	235285	316209	316209	1844	1511	0	
NFWQGVK	1	Unmodified	877.44464	0.44463717	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.586	41.618	2	0.025835	35675	160511_QHF_FH_JSI12i_2	57.102	0			0.22122	0.2463	57.03	4	4	Median	0.17819	0.15137	NaN	1	1	Median	0.20813	0.25424	NaN	1	1	Median	0.23513	0.23861	NaN	1	1	Median	0.53138	0.59417	NaN	1	1	Median	801410000	635000000	166410000	159340000	130520000	28821000	224860000	183320000	41543000	294190000	240950000	53240000	123010000	80208000	42802000	38381	3736	36106	235286;235287;235288;235289	316210;316211;316212;316213	316210			4	
NFWVSGLSSTTR	0	Unmodified	1353.6677	0.66771383	2670	Q15424	SAFB	Scaffold attachment factor B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2	2	1	1	1	65.902	64.971	2	2.0662E-05	56723	160511_QHF_FH_JSI11i_2	111.27	85.327			0.7238	0.74994	12.431	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84798	0.81885	NaN	1	0	Median	0.6178	0.68683	NaN	1	0	Median	254810000	157450000	97352000	0	0	0	0	0	0	149290000	87070000	62221000	105520000	70384000	35131000	38382	2670	36107	235290;235291;235292;235293;235294	316214;316215;316216;316217;316218;316219;316220	316218			7	
NFYDSPEK	1	Unmodified	998.43453	0.434526	354	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	24.171	21.948	2	0.0033453	19543	160511_QHF_FH_JSI12i_1	73.248	66.424			1.3928	1.3993	37.629	5	2	Median	0.82766	0.68091	NaN	1	1	Median	1.4726	1.7241	NaN	1	0	Median	1.3239	1.3146	8.8313	2	1	Median	1.5744	1.668	NaN	1	0	Median	852760000	337440000	515310000	139600000	57901000	81695000	170620000	68241000	102380000	250510000	91766000	158740000	292030000	119540000	172490000	38383	354	36108	235295;235296;235297;235298;235299	316221;316222;316223;316224;316225	316222			5	
NFYGGNGIVGAQVPLGAGIALACK	1	Unmodified	2346.2154	0.21543586	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	99.304	99.133	3	1.9996E-05	85307	160511_QHF_FH_JSI12i_2	55.744	47.752			1.7517	1.9969	33.04	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1242	2.5224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4445	1.5809	NaN	1	1	Median	37769000	17658000	20111000	0	0	0	15511000	8225700	7285300	0	0	0	22258000	9432100	12825000	38384	903	36109	235300;235301	316226;316227	316226			2	
NFYQEHPDLAR	0	Unmodified	1388.6473	0.64731274	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.9		7							5	1	2	5	4	37.148	33.111	2;3	8.2348E-05	29232	160511_QHF_FH_JSI10i_2	64.55	56.037			0.899	0.95025	31.503	10	4	Median	1.1572	0.98493	NaN	1	0	Median	0.75356	0.92685	3.2166	2	1	Median	0.91581	0.95233	13.676	3	0	Median	0.89625	0.98702	52.42	4	3	Median	2339300000	1200100000	1139300000	446610000	204160000	242450000	637830000	358110000	279720000	843670000	456050000	387630000	411200000	181730000	229470000	38385	1128	36110	235302;235303;235304;235305;235306;235307;235308;235309;235310;235311;235312;235313	316228;316229;316230;316231;316232;316233;316234;316235;316236;316237;316238;316239;316240;316241;316242;316243	316240			16	
NFYVEHPEVAR	0	Unmodified	1359.6571	0.65714914	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.266		12	1							3	3	3	4	38.1	37.264	2;3	5.2278E-06	31700	160511_QHF_FH_JSI11i_2	123.51	103.21			1.0354	1.1035	32.02	11	6	Median	1.3583	1.1705	8.3291	2	1	Median	0.88308	1.0855	44.241	3	2	Median	0.96885	1.0027	46.883	3	2	Median	1.0354	1.174	27.523	3	1	Median	2495700000	1178200000	1317500000	339050000	147690000	191360000	715210000	407500000	307710000	1029700000	427980000	601690000	411760000	194990000	216770000	38386	3893	36111	235314;235315;235316;235317;235318;235319;235320;235321;235322;235323;235324;235325;235326	316244;316245;316246;316247;316248;316249;316250;316251;316252;316253;316254;316255;316256;316257;316258;316259	316253			16	
NFYVEVPELAK	1	Unmodified	1307.6762	0.67615325	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	79.5	78.895	2	5.0156E-05	69293	160511_QHF_FH_JSI11i_2	114.97	104.74			0.84396	0.90375	16.035	7	1	Median	1.0907	0.93165	NaN	1	0	Median	0.65301	0.79123	18.805	2	0	Median	0.92154	0.90556	17.028	2	0	Median	0.76034	0.81698	24.512	2	1	Median	650360000	337280000	313080000	85457000	31837000	53620000	181070000	105060000	76013000	213420000	108030000	105390000	170420000	92353000	78065000	38387	3216	36112	235327;235328;235329;235330;235331;235332;235333	316260;316261;316262;316263;316264;316265;316266;316267;316268;316269;316270;316271	316268			12	
NFYYAAVPSAR	0	Unmodified	1257.6142	0.6142217	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.48		5					2	2	4	3	4	3	3	58.291	51.714	2	3.4704E-05	44548	160511_QHF_FH_JSI12i_2	98.04	67.47			1.0055	1.0152	68.774	13	4	Median	1.1502	0.97733	21.135	3	0	Median	0.86458	1.0199	51.377	4	0	Median	1.0055	1.0152	113.75	3	2	Median	2.0184	2.2582	97.035	3	2	Plateau	2587700000	860800000	1726900000	237180000	101890000	135290000	283190000	160000000	123190000	367180000	189350000	177830000	1700200000	409550000	1290600000	38388	2294	36113	235334;235335;235336;235337;235338;235339;235340;235341;235342;235343;235344;235345;235346	316272;316273;316274;316275;316276;316277;316278;316279;316280;316281;316282;316283;316284;316285;316286;316287;316288;316289;316290	316272			19	
NGADPDFK	1	Unmodified	862.3821	0.38209649	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	13.029	12.606	2	0.018638	10297	160511_QHF_FH_JSI10i_1	57.708	46.639			0.86379	0.8659	20.572	4	1	Median	1.1968	0.99999	NaN	1	0	Median	0.53212	0.63065	NaN	1	1	Median	0.96769	0.93922	NaN	1	0	Median	0.77104	0.7983	NaN	1	0	Median	335710000	184790000	150920000	79152000	32772000	46380000	94639000	60269000	34370000	81952000	41751000	40201000	79962000	49993000	29970000	38389	432	36114	235347;235348;235349;235350	316291;316292	316292			2	
NGAPIIMSFPHFYQADER	0	Unmodified	2091.9836	0.98364501	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	85.45	84.976	3	1.0952E-05	75852	160511_QHF_FH_JSI11i_3	83.253	73.465			1.147	1.2013	13.19	5	2	Median	NaN	NaN	NaN	0	0	Median	0.98301	1.2013	NaN	1	0	Median	1.2884	1.2305	10.136	2	1	Median	1.0437	1.0842	20.508	2	1	Median	325790000	151410000	174380000	0	0	0	58345000	25339000	33007000	143520000	62399000	81121000	123920000	63669000	60253000	38390	2489	36115	235351;235352;235353;235354;235355	316293;316294;316295;316296;316297;316298;316299	316294			7	
NGAVQTIAQR	0	Unmodified	1056.5676	0.56760585	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	17.169	16.192	2	0.0037715	13174	160511_QHF_FH_JSI12i_2	68.371	37.081			0.74575	0.80161	50.589	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74575	0.80161	50.589	2	2	Median	44906000	25834000	19073000	0	0	0	0	0	0	0	0	0	44906000	25834000	19073000	38391	2108	36116	235356;235357	316300;316301	316300			2	
NGAVTHIK	1	Unmodified	838.4661	0.4661009	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	1	2		7.3615	4.7481	2	0.025331	4481	160511_QHF_FH_JSI9i_2	52.867	23.491			3.7417	3.9253	58.712	4	3	Median	2.0638	1.7277	NaN	1	1	Median	5.6481	6.958	NaN	1	1	Median	3.7417	3.9253	21.988	2	1	Median	NaN	NaN	NaN	0	0	Median	97906000	20926000	76980000	25156000	6072800	19083000	31181000	6690400	24490000	41569000	8163000	33406000	0	0	0	38392	2239	36117	235358;235359;235360;235361	316302;316303;316304;316305	316303			4	
NGDLDEVK	1	Unmodified	888.41888	0.41887593	1900	P58546	MTPN	Myotrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				2	2	2	3	16.792	13.28	2	0.0035931	11631	160511_QHF_FH_JSI10i_1	71.379	55.94			0.92575	0.99197	63.585	9	6	Median	1.4035	1.1502	85.635	2	2	Median	0.67726	0.79871	45.265	2	1	Median	1.1132	1.0869	12.927	2	0	Median	0.26243	0.27241	82.632	3	3	Plateau	2895100000	1565100000	1330100000	923370000	359250000	564120000	744560000	436890000	307670000	688290000	387690000	300600000	538900000	381230000	157670000	38393	1900	36118	235362;235363;235364;235365;235366;235367;235368;235369;235370	316306;316307;316308;316309;316310;316311;316312;316313;316314;316315;316316	316311			11	
NGDLSFKYVK	2	Acetyl (K)	1211.6186	0.61863837	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		64.314	53.25	2	0.030275	29901	160513_QHF_FH_JSI11Kac_4	56.563	38.744			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3030500	3030500	0	0	0	0	0	0	0	3030500	3030500	0	0	0	0	38394	1596	36119	235371	316317	316317			1	
NGEDLGVAFWISK	1	Unmodified	1434.7143	0.71432967	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.518	87.565	2	0.00121	75748	160511_QHF_FH_JSI12i_2	75.695	64.531			0.7387	0.7763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7387	0.7763	NaN	1	1	Median	13642000	7557300	6085000	0	0	0	0	0	0	0	0	0	13642000	7557300	6085000	38395	2785	36120	235372	316318	316318			1	
NGEELHGGK	1	Unmodified	939.44101	0.44100836	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.03	1	6					1			1	2	3	2	4.8763	3.4511	2	0.010901	2501	160511_QHF_FH_JSI10i_1	49.423	33.984			0.77807	0.93772	59.197	7	3	Median	1.3829	1.1834	NaN	1	0	Median	0.67088	0.81321	20.147	2	0	Median	0.53275	0.53953	78.723	2	1	Median	0.47657	0.52981	91.649	2	2	Median	732040000	420320000	311710000	120550000	50791000	69754000	202870000	105390000	97478000	166870000	110280000	56595000	241750000	153860000	87888000	38396	4212	36121	235373;235374;235375;235376;235377;235378;235379;235380	316319;316320;316321;316322;316323;316324;316325;316326;316327	316321			9	
NGEFFMSPNDFVTR	0	Unmodified	1659.7351	0.73514147	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.451	80.779	2	2.5098E-05	69742	160511_QHF_FH_JSI12i_2	82.362	55.689			2.0774	1.7892	NaN	1	1	Median	2.0774	1.7892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27066000	6259200	20807000	27066000	6259200	20807000	0	0	0	0	0	0	0	0	0	38397	5345	36122	235381;235382;235383;235384	316328;316329;316330;316331	316328			4	
NGELENIKPK	2	Acetyl (K)	1182.6245	0.62445203	2077	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		48.045	38.659	2	0.048755	21493	160513_QHF_FH_JSI11Kac_3	43.282	35.357			0.35853	0.36612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35853	0.36612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6027800	4477200	1550500	0	0	0	0	0	0	6027800	4477200	1550500	0	0	0	38398	2077	36123	235385	316332	316332			1	
NGEPEPTPVVNGEK	1	Unmodified	1465.7049	0.7048872	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.218	25.647	2	1.0973E-05	22538	160511_QHF_FH_JSI11i_1	125.97	101.88			1.2928	0.99624	18.263	4	1	Linear	1.3594	1.1056	NaN	1	1	Median	0.96042	1.125	NaN	1	0	Median	0.93982	0.89772	NaN	1	0	Median	0.71411	0.76683	NaN	1	0	Median	219050000	111560000	107480000	81575000	31775000	49800000	47395000	26400000	20995000	46722000	30005000	16717000	43356000	23384000	19972000	38399	1493	36124	235386;235387;235388;235389	316333;316334;316335;316336;316337;316338	316333			5	
NGESSELDLQGIR	0	Unmodified	1416.6845	0.68448611	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.75	47.071	2	5.1632E-05	42472	160511_QHF_FH_JSI11i_1	110.93	91.617			0.73916	0.78895	21.571	4	0	Median	1.1929	0.99478	NaN	1	0	Median	0.62385	0.73385	NaN	1	0	Median	0.87579	0.84818	NaN	1	0	Median	0.57343	0.59902	NaN	1	0	Median	827280000	481600000	345680000	211440000	100430000	111010000	233960000	143740000	90219000	217200000	130020000	87173000	164690000	107410000	57283000	38400	5508	36125	235390;235391;235392;235393	316339;316340;316341;316342;316343;316344;316345;316346;316347;316348	316340			10	
NGETELCMEGR	0	Unmodified	1294.5282	0.52818516	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.929	24.391	2	0.0015116	21658	160511_QHF_FH_JSI12i_1	63.073	58.29			0.80657	0.82586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80657	0.82586	NaN	1	0	Median	24273000	12895000	11377000	0	0	0	0	0	0	0	0	0	24273000	12895000	11377000	38401	694	36126	235394	316349	316349			1	
NGETLLGAINFFIASVNTLVNK	1	Unmodified	2334.2583	0.25834654	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	105.34	97.178	3	2.1528E-29	55511	160513_QHF_FH_JSI9Kac_6	158.53	150.44			1.6825	1.6471	149.53	6	5	Median	5.2209	4.3869	NaN	1	0	Median	0.55113	0.65159	277.35	2	2	Median	1.6825	1.6471	3.6209	2	2	Median	0.4365	0.47279	NaN	1	1	Median	412080000	164880000	247200000	209210000	37424000	171790000	179910000	114390000	65515000	11140000	4143400	6997100	11822000	8920900	2901500	38402	1796	36127	235395;235396;235397;235398;235399;235400;235401	316350;316351;316352;316353;316354;316355;316356;316357	316353			8	
NGETLLGAVNFFVSSINTLVTK	1	Unmodified	2323.2424	0.24236212	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.21	97.487	3	9.5855E-08	57717	160513_QHF_FH_JSI10Kac_6	77.641	63.626			0.39527	0.47453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.39527	0.47453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95433000	69498000	25935000	0	0	0	95433000	69498000	25935000	0	0	0	0	0	0	38403	1795	36128	235402	316358	316358			1	
NGETVPIDEQFDK	1	Unmodified	1490.6889	0.68890278	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.723	48.043	2	5.0861E-05	42687	160511_QHF_FH_JSI9i_1	111.26	88.615			1.0455	1.0254	34.824	4	3	Median	1.1582	0.95664	NaN	1	0	Median	0.94379	1.0991	NaN	1	1	Median	1.4142	1.3897	NaN	1	1	Median	0.5841	0.60765	NaN	1	1	Median	713780000	384890000	328890000	154140000	75191000	78950000	148830000	87970000	60856000	243460000	105490000	137960000	167360000	116230000	51125000	38404	1400	36129	235403;235404;235405;235406	316359;316360;316361;316362;316363	316363			5	
NGEVLLEALFLTVDPYMR	0	Unmodified	2079.0711	0.071063038	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.5	6.06		1							3	1	2	1		102.43	98.583	2;3	6.9103E-43	53532	160513_QHF_FH_JSI9Kac_6	210.34	164.55			9.6016	11.783	126.46	3	2	Plateau	NaN	NaN	NaN	0	0	Median	6.2564	7.4566	98.698	2	2	Median	1.2738	1.2002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159580000	33054000	126530000	0	0	0	143270000	25494000	117780000	16309000	7560300	8749100	0	0	0	38405	2581	36130	235407;235408;235409;235410	316364;316365;316366;316367	316365			4	
NGEVLLEALFLTVDPYMR	0	Oxidation (M)	2095.066	0.06597766	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	100.32	90.882	3	0.0034966	50023	160513_QHF_FH_JSI12Kac_6	58.672	43.08			0.23228	0.24338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23228	0.24338	NaN	1	1	Median	48567000	39934000	8633500	0	0	0	0	0	0	0	0	0	48567000	39934000	8633500	38406	2581	36130	235411	316368	316368		2025	1	
NGEVQNLAVK	1	Unmodified	1070.572	0.57202253	3343	Q86VP6;O75155	CAND1;CAND2	Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	27.17	24.402	2	1.4201E-07	21680	160511_QHF_FH_JSI12i_1	120.15	83.759			1.0894	1.0605	47.152	7	4	Median	1.267	1.0605	NaN	1	0	Median	0.7389	0.87496	55.309	2	1	Median	0.8934	0.87496	91.473	2	2	Median	0.95732	1.0339	37.173	2	1	Median	1516500000	787680000	728810000	344570000	157880000	186690000	301570000	128440000	173130000	519870000	280690000	239180000	350480000	220670000	129820000	38407	3343	36131	235412;235413;235414;235415;235416;235417;235418	316369;316370;316371;316372;316373;316374;316375;316376;316377;316378	316372			10	
NGEVVHTPETSV	0	Unmodified	1267.6044	0.60444487	289	O15427	SLC16A3	Monocarboxylate transporter 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	3	1	33.99	30.593	2	7.0723E-16	27575	160511_QHF_FH_JSI12i_1	160	155.04			0.90794	1.065	21.279	6	0	Median	1.5041	1.2387	NaN	1	0	Median	0.90794	1.065	2.9856	2	0	Median	1.0208	0.99735	17.918	2	0	Median	0.64694	0.68795	NaN	1	0	Median	1303700000	665100000	638630000	370810000	151230000	219580000	346220000	188690000	157530000	297880000	147340000	150540000	288820000	177840000	110980000	38408	289	36132	235419;235420;235421;235422;235423;235424;235425	316379;316380;316381;316382;316383;316384;316385;316386;316387;316388	316382			10	
NGFLLDGFPR	0	Unmodified	1134.5822	0.58219329	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	78.735	77.726	2	1.9708E-09	67238	160511_QHF_FH_JSI12i_2	131.41	104.15			0.86728	0.94291	23.814	6	2	Median	1.3597	1.1338	24.763	2	1	Median	0.69745	0.84842	26.929	2	1	Median	0.91597	0.93424	NaN	1	0	Median	0.66703	0.73657	NaN	1	0	Median	1257400000	676710000	580650000	206310000	92148000	114160000	336420000	185490000	150930000	466320000	238330000	227990000	248310000	160750000	87565000	38409	1835	36133	235426;235427;235428;235429;235430;235431	316389;316390;316391;316392;316393;316394;316395;316396;316397	316389			9	
NGFLNLALPFFGFSEPLAAPR	0	Unmodified	2277.1946	0.19462407	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.93		7	1						7	2	4	5	4	101.8	97.862	2;3	2.6116E-88	52404	160513_QHF_FH_JSI9Kac_6	221.91	186.18			0.91906	1.0752	20.772	15	2	Median	1.7172	1.4629	9.2807	2	0	Median	0.93145	1.1167	2.5414	4	0	Median	0.96764	0.96872	19.872	5	1	Median	0.82218	0.88208	11.778	4	1	Median	1657400000	857030000	800360000	215640000	83450000	132190000	443090000	235050000	208040000	444510000	226320000	218190000	554140000	312200000	241940000	38410	1208	36134	235432;235433;235434;235435;235436;235437;235438;235439;235440;235441;235442;235443;235444;235445;235446	316398;316399;316400;316401;316402;316403;316404;316405;316406;316407;316408;316409;316410;316411;316412;316413	316411			16	
NGFSLVNQIYYYHNVK	1	Unmodified	1957.9686	0.96864688	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	79.418	71.25	3	0.00039253	39651	160513_QHF_FH_JSI10Kac_6	118.47	107.43			0.42585	0.50027	30.961	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.42585	0.50027	NaN	1	1	Median	0.27889	0.27551	NaN	1	1	Median	0.40174	0.42867	NaN	1	1	Median	173350000	128440000	44908000	0	0	0	118710000	85435000	33278000	24678000	20679000	3999300	29958000	22327000	7630400	38411	3430	36135	235447;235448;235449	316414;316415;316416	316416			3	
NGFSSVQATQLQTTQSVEGATGSAVK	1	Unmodified	2595.2776	0.27763801	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	62.152	61.514	3	3.0178E-49	55826	160511_QHF_FH_JSI11i_1	189.62	180.67			0.89165	0.87012	23.685	5	2	Median	1.4668	1.1911	NaN	1	0	Median	0.89165	1.0612	NaN	1	0	Median	0.89744	0.87012	NaN	1	0	Median	0.70041	0.71416	10.541	2	2	Median	722830000	388790000	334050000	173960000	72326000	101630000	132660000	74405000	58256000	167100000	90629000	76473000	249110000	151430000	97684000	38412	2505	36136	235450;235451;235452;235453;235454	316417;316418;316419;316420;316421;316422;316423;316424;316425	316418			9	
NGFVVLK	1	Unmodified	775.45922	0.4592246	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.14	7	8	4			3	2	4	2	7	8	8	7	46.321	42.252	1;2	0.013007	36827	160511_QHF_FH_JSI9i_2	68.485	50.923			0.95045	1.0603	49.501	28	2	Median	1.5422	1.2996	77.365	6	1	Median	0.92164	1.1118	11.713	8	0	Median	1.0275	1.0513	19.375	7	1	Median	0.58387	0.62147	11.482	7	0	Median	17090000000	8959000000	8130700000	3297800000	1248700000	2049000000	3699300000	2073500000	1625800000	6228100000	3367100000	2861100000	3864600000	2269700000	1594800000	38413	2060	36137	235455;235456;235457;235458;235459;235460;235461;235462;235463;235464;235465;235466;235467;235468;235469;235470;235471;235472;235473;235474;235475;235476;235477;235478;235479;235480;235481;235482;235483;235484	316426;316427;316428;316429;316430;316431;316432;316433;316434;316435;316436;316437;316438;316439;316440;316441;316442;316443;316444;316445;316446;316447;316448;316449;316450;316451;316452;316453;316454;316455;316456;316457;316458;316459;316460;316461;316462	316448			37	
NGFVVLKGR	1	Acetyl (K)	1030.5924	0.59236404	2060	P63241;Q9GZV4	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	yes	no	1	0	0	1			By MS/MS		16	0									1			1		60.649	50.935	2	0.0059766	27599	160513_QHF_FH_JSI11Kac_6	71.379	56.865			0.4472	0.43433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4472	0.43433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14572000	9025500	5546100	0	0	0	0	0	0	14572000	9025500	5546100	0	0	0	38414	2060	36138	235485	316463	316463	2126		1	
NGFVVLKGRPCK	2	Acetyl (K)	1415.7707	0.77073911	2060	P63241;Q9GZV4	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	yes	no	1	0	0	2			By MS/MS		16	0									1			1		53.504	43.776	2	0.0062474	23712	160513_QHF_FH_JSI11Kac_6	75.294	50.441			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38415	2060	36139	235486	316464	316464	2125;2126		1	
NGGHFVISIK	1	Unmodified	1070.5873	0.58727866	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.12	6.88		3	1						4	1	3	2	2	45.318	40.121	3	0.0054945	22203	160513_QHF_FH_JSI10Kac_6	36.32	26.665			1.132	1.0748	46.447	8	2	Median	1.1344	0.95709	NaN	1	0	Median	0.67088	0.79561	73.174	3	1	Median	1.4315	1.4173	22.708	2	1	Median	0.96572	1.039	22.34	2	0	Median	305820000	149510000	156300000	57357000	25252000	32104000	113380000	63473000	49908000	74503000	30724000	43779000	60574000	30062000	30512000	38416	1203	36140	235487;235488;235489;235490;235491;235492;235493;235494	316465;316466;316467;316468;316469;316470	316470			6	
NGGLGHMNIALLSDLTK	1	Unmodified	1752.9193	0.91925384	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		10	5							3	4	4	4	88.309	87.746	2;3	3.2067E-08	78017	160511_QHF_FH_JSI10i_2	108.56	97.287			0.91558	0.97192	15.072	14	1	Median	1.3026	1.0776	8.9243	3	0	Plateau	0.77431	0.94911	5.8429	4	1	Median	1.0765	1.0674	11.176	4	0	Median	0.73502	0.8273	9.1639	3	0	Plateau	2538000000	1159300000	1378700000	453190000	158980000	294210000	619740000	286010000	333730000	882570000	376870000	505700000	582480000	337460000	245020000	38417	1338	36141	235495;235496;235497;235498;235499;235500;235501;235502;235503;235504;235505;235506;235507;235508;235509	316471;316472;316473;316474;316475;316476;316477;316478;316479;316480;316481;316482;316483;316484;316485;316486;316487;316488;316489;316490;316491;316492;316493;316494;316495;316496;316497;316498;316499;316500;316501;316502;316503;316504	316501			34	
NGGLGHMNIALLSDLTK	1	Oxidation (M)	1768.9142	0.91416847	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	1	0	By MS/MS				2	0		1								1				72.795	71.96	3	0.038952	63493	160511_QHF_FH_JSI9i_2	32.565	26.661			1.5757	1.3668	NaN	1	1	Median	1.5757	1.3668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33975000	16118000	17857000	33975000	16118000	17857000	0	0	0	0	0	0	0	0	0	38418	1338	36141	235510	316505	316505			1	
NGGLITLEELHQQVLK	1	Unmodified	1790.989	0.98904797	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.792	77.159	3	0.00043472	67708	160511_QHF_FH_JSI11i_2	66.568	56.372			0.52599	0.55261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52599	0.55261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37667000	26507000	11161000	0	0	0	0	0	0	37667000	26507000	11161000	0	0	0	38419	4102	36142	235511	316506	316506			1	
NGGQILIADLR	0	Unmodified	1168.6564	0.65642086	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	5.88		3	1			1	2	4	1	3	4	2	3	67.955	60.347	2	2.2619E-09	32356	160513_QHF_FH_JSI10Kac_4	125.74	96.07			0.98682	1.1381	21.616	10	4	Median	1.8641	1.5913	NaN	1	0	Median	0.93249	1.1129	13.429	4	2	Median	1.1846	1.1866	50.021	2	1	Median	0.99338	1.1035	9.8527	3	1	Median	775400000	449940000	325460000	25227000	11024000	14203000	228430000	126310000	102120000	326090000	198110000	127980000	195640000	114490000	81150000	38420	1860	36143	235512;235513;235514;235515;235516;235517;235518;235519;235520;235521;235522;235523	316507;316508;316509;316510;316511;316512;316513;316514;316515;316516;316517	316509			11	
NGGVVTTAFYDPR	0	Unmodified	1395.6783	0.67827852	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.097	52.72	2	0.0072227	45167	160511_QHF_FH_JSI12i_2	50.207	36.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38421	5173	36144	235524	316518	316518			1	
NGHALLAFMFSR	0	Unmodified	1362.6867	0.68667513	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.322	74.726	3	4.836E-05	40916	160513_QHF_FH_JSI10Kac_6	81.278	68.723			2.4773	2.9829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4773	2.9829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	266960000	29561000	237390000	0	0	0	266960000	29561000	237390000	0	0	0	0	0	0	38422	4584	36145	235525	316519	316519			1	
NGHNEMDEPMFTQPLMYK	1	Unmodified	2180.9329	0.93293135	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	69.762	68.868	3	5.4939E-05	59430	160511_QHF_FH_JSI12i_2	67.645	65.911			0.91769	1.0141	26.978	4	0	Median	1.9267	1.675	NaN	1	0	Median	0.83218	1	NaN	1	0	Median	1.012	1.0284	NaN	1	0	Median	0.81639	0.92574	NaN	1	0	Median	223420000	114110000	109310000	30245000	11897000	18348000	56490000	30579000	25911000	84405000	43380000	41025000	52278000	28249000	24029000	38423	2185	36146	235526;235527;235528;235529	316520;316521	316520			2	
NGHVGISFVPK	1	Unmodified	1153.6244	0.62439245	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	6.84		6	1						5	4	3	2	3	43.324	38.811	2;3	0.00019545	33088	160511_QHF_FH_JSI11i_2	68.132	61.691			0.8794	0.93354	63.052	12	5	Median	0.81419	0.69587	100.46	4	3	Median	1.6149	2.01	49.565	3	2	Median	0.94005	0.95959	1.9171	2	0	Median	0.68855	0.77204	13.696	3	0	Median	1924600000	922530000	1002100000	330140000	153030000	177110000	481990000	197540000	284460000	666650000	298570000	368080000	445800000	273390000	172410000	38424	1192	36147	235530;235531;235532;235533;235534;235535;235536;235537;235538;235539;235540;235541	316522;316523;316524;316525;316526;316527;316528;316529;316530;316531;316532;316533;316534	316529			13	
NGIDILVGTPGR	0	Unmodified	1210.667	0.66698555	4940;4346	Q9NR30;Q9BQ39	DDX21;DDX50	Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50	no	no	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	63.099	62.174	2	0.0096226	53384	160511_QHF_FH_JSI12i_2	69.786	56.332			1.0616	1.0845	26.704	3	0	Median	1.5192	1.2873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0616	1.0845	NaN	1	0	Median	0.68422	0.76247	NaN	1	0	Median	225740000	128320000	97427000	51036000	21429000	29606000	0	0	0	90085000	52673000	37412000	84624000	54215000	30409000	38425	4940;4346	36148	235542;235543;235544	316535	316535			0	
NGIEKHLLR	1	Acetyl (K)	1120.6353	0.63529149	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		43.133	33.514	3	0.0062048	18383	160513_QHF_FH_JSI11Kac_6	53.327	39.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38426	900	36149	235545	316536	316536	656		1	
NGIHDLDNISFPK	1	Unmodified	1468.731	0.73104237	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	1	5	2	61.328	60.471	2;3	0.0002641	52725	160511_QHF_FH_JSI11i_2	75.764	62.336			0.89308	0.96041	29.487	8	3	Median	1.492	1.2681	25.098	2	1	Median	0.99997	1.2423	NaN	1	1	Median	0.58371	0.59895	27.714	3	1	Plateau	0.78681	0.88273	1.6267	2	0	Median	1512400000	796520000	715840000	330510000	149650000	180850000	102570000	53626000	48943000	664510000	338620000	325890000	414780000	254620000	160160000	38427	1673	36150	235546;235547;235548;235549;235550;235551;235552;235553;235554;235555	316537;316538;316539;316540;316541;316542;316543;316544;316545	316542			9	
NGILYLEDPVNHEWYPHYFVLTSSK	1	Unmodified	3020.4709	0.47085851	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	88.096	80.515	4	1.9597E-19	42575	160513_QHF_FH_JSI12Kac_6	116.72	107.99			0.49511	0.55552	34.493	2	1	Median	NaN	NaN	NaN	0	0	Median	0.59182	0.70896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4142	0.43528	NaN	1	0	Median	289570000	214020000	75548000	0	0	0	91987000	70989000	20998000	0	0	0	197580000	143030000	54550000	38428	1152	36151	235556;235557	316546;316547	316546			2	
NGITEENLNK	1	Unmodified	1130.5568	0.5567664	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.85	20.335	2	6.5291E-07	17496	160511_QHF_FH_JSI10i_1	120.31	94.732			1.1631	1.2216	60.746	4	4	Median	1.786	1.4437	NaN	1	1	Median	1.2758	1.499	NaN	1	1	Median	1.0604	1.0337	NaN	1	1	Median	0.37969	0.40669	NaN	1	1	Median	310680000	190490000	120190000	51049000	21564000	29485000	56311000	29330000	26981000	96097000	55897000	40200000	107220000	83703000	23521000	38429	1962	36152	235558;235559;235560;235561	316548;316549;316550;316551	316550			4	
NGKPISSSYVK	2	Unmodified	1178.6295	0.62953741	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	14.702	14.371	2	0.00015888	11140	160511_QHF_FH_JSI12i_3	98.044	74.615			0.86591	0.92359	35.43	4	0	Median	1.7923	1.5481	NaN	1	0	Median	0.76004	0.92086	NaN	1	0	Median	0.98651	0.92632	NaN	1	0	Median	0.63274	0.65571	NaN	1	0	Median	255200000	145940000	109260000	24558000	9580400	14978000	20806000	12534000	8271800	95691000	55917000	39774000	114140000	67905000	46237000	38430	1129	36153	235562;235563;235564;235565	316552;316553	316553			2	
NGKYDLDFK	2	Acetyl (K)	1140.5451	0.54513908	1044	P13929	ENO3	Beta-enolase	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			74.427	65.896	2	0.037397	32259	160513_QHF_FH_JSI10Kac_3	55.549	38.773			0.010705	0.012692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.010705	0.012692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9017700	8977300	40389	0	0	0	9017700	8977300	40389	0	0	0	0	0	0	38431	1044	36154	235566	316554	316554			1	
NGLDVLFK	1	Unmodified	904.50182	0.5018177	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	67.37	66.508	2	0.013939	57150	160511_QHF_FH_JSI12i_2	51.854	27.223			1.3379	1.3173	30.729	4	3	Median	1.6813	1.4581	NaN	1	1	Median	1.466	1.8134	NaN	1	1	Median	1.221	1.1901	NaN	1	1	Median	0.79603	0.88054	NaN	1	0	Median	192510000	93859000	98652000	42639000	19577000	23062000	61380000	26905000	34474000	14068000	5752300	8315300	74425000	41624000	32800000	38432	2198	36155	235567;235568;235569;235570	316555;316556;316557;316558;316559	316556			5	
NGLEFDTGIHYIGR	0	Unmodified	1590.7791	0.77905519	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65.532	64.97	3	0.046157	56681	160511_QHF_FH_JSI11i_2	21.42	10.476			1.1688	1.2358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1688	1.2358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39243000	14288000	24955000	0	0	0	0	0	0	39243000	14288000	24955000	0	0	0	38433	3073	36156	235571	316560	316560			1	
NGLITMQSHVIR	0	Unmodified	1367.7344	0.73435361	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			51.789	43.181	3	0.014299	23788	160513_QHF_FH_JSI10Kac_6	41.644	27.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38434	2305	36157	235572	316561	316561			1	
NGLLHGHFTLPFLK	1	Unmodified	1592.8827	0.8827324	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.86	4.55			6						1	2		1	4	85.522	84.034	3;4	0.010861	73303	160511_QHF_FH_JSI12i_3	37.156	24.176			0.76681	0.73684	54.143	7	3	Median	1.6366	1.4153	42.73	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76681	0.73684	NaN	1	0	Median	0.72878	0.77209	42.027	4	2	Linear	117270000	67264000	50003000	29876000	13975000	15901000	0	0	0	9961000	5494700	4466400	77430000	47794000	29635000	38435	648	36158	235573;235574;235575;235576;235577;235578;235579	316562;316563;316564;316565;316566;316567;316568;316569;316570	316567			9	
NGLLTEHNICEINGQNVIGLK	1	Unmodified	2335.1954	0.1954287	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.307	74.431	3	7.0662E-10	65396	160511_QHF_FH_JSI11i_2	107.41	93.099			0.73581	0.72384	15.941	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81512	0.98723	NaN	1	1	Median	0.73581	0.72384	NaN	1	0	Median	0.80202	0.9005	NaN	1	0	Median	150870000	80941000	69931000	0	0	0	55491000	26343000	29148000	65210000	37449000	27761000	30172000	17149000	13022000	38436	151	36159	235580;235581;235582	316571;316572;316573;316574;316575;316576;316577	316575			7	
NGLNLLR	0	Unmodified	798.47119	0.47118627	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		41.648	40.821	2	0.038514	34957	160511_QHF_FH_JSI11i_2	48.115	0			0.78494	0.78128	26.62	3	0	Plateau	1.5573	1.3286	NaN	1	0	Median	0.8548	1.0542	NaN	1	0	Median	0.78494	0.78128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171950000	79647000	92303000	37598000	15750000	21848000	47255000	21114000	26141000	87097000	42783000	44314000	0	0	0	38437	3860	36160	235583;235584;235585	316578	316578			1	
NGLSFIETSALDSTNVEAAFQTILTEIYR	0	Unmodified	3202.6034	0.60338882	2009	P62491	RAB11A	Ras-related protein Rab-11A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.34	96.622	3	2.7029E-71	57133	160513_QHF_FH_JSI10Kac_6	198.06	179.5			0.90566	1.0389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90566	1.0389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82920000	45137000	37783000	0	0	0	82920000	45137000	37783000	0	0	0	0	0	0	38438	2009	36161	235586	316579	316579			1	
NGLSLAALKK	2	Acetyl (K)	1055.6339	0.63389451	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.425	62.694	2	0.037661	33448	160513_QHF_FH_JSI11Kac_5	63.816	54.602			0.50638	0.49588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50638	0.49588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7316700	5833900	1482800	0	0	0	0	0	0	7316700	5833900	1482800	0	0	0	38439	1097	36162	235587	316580	316580			1	
NGLWGHALLLASK	1	Unmodified	1378.7721	0.77211932	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	3	2	1	2	74.02	69.433	3	0.00029084	36142	160513_QHF_FH_JSI9Kac_6	72.898	66.238			1.1487	1.0639	66.735	6	2	Median	1.6383	1.3788	52.544	2	1	Median	1.6429	1.896	90.55	2	1	Median	1.1588	1.1324	NaN	1	0	Median	0.50558	0.52417	NaN	1	0	Median	223230000	100120000	123100000	55824000	21550000	34274000	87988000	29210000	58778000	32681000	16899000	15781000	46733000	32463000	14270000	38440	235	36163	235588;235589;235590;235591;235592;235593;235594;235595	316581;316582;316583;316584;316585;316586;316587;316588;316589;316590	316587			10	
NGMAVAQFLESNPWVEK	1	Unmodified	1918.9247	0.92473315	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	101.25	101.15	2	3.6353E-60	86967	160511_QHF_FH_JSI12i_2	268.08	234.19			0.98982	1.1033	52.86	3	2	Median	1.7411	1.4812	NaN	1	0	Median	0.43117	0.53059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98982	1.1033	NaN	1	1	Median	352060000	206350000	145710000	89758000	30352000	59406000	163400000	111170000	52233000	0	0	0	98904000	64832000	34072000	38441	1397	36164	235596;235597;235598	316591;316592;316593	316591			3	
NGMLLTGGGK	1	Unmodified	946.4906	0.49060109	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				29.267	28.228	2	0.0084253	24370	160511_QHF_FH_JSI9i_2	59.931	48.562			2.5585	2.2466	NaN	1	1	Median	2.5585	2.2466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12608000	2686600	9921000	12608000	2686600	9921000	0	0	0	0	0	0	0	0	0	38442	4848	36165	235599	316594	316594			1	
NGMLNVSPIGR	0	Unmodified	1156.6023	0.6022768	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.658	50.682	2	4.3151E-07	43746	160511_QHF_FH_JSI11i_2	117.02	105.43			0.97482	1.0803	14.262	4	0	Median	1.4478	1.2449	NaN	1	0	Median	0.89535	1.1004	NaN	1	0	Median	1.0614	1.0606	NaN	1	0	Median	0.78827	0.88194	NaN	1	0	Median	631190000	309830000	321360000	110090000	37018000	73068000	134660000	68037000	66627000	239580000	123210000	116370000	146860000	81561000	65296000	38443	275	36166	235600;235601;235602;235603	316595;316596;316597;316598;316599	316597			5	
NGMTLLMMGSADALPEEPSAK	1	Unmodified	2162.0058	0.0057619439	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	1	4	2	91.863	91.327	2;3	1.4837E-33	80315	160511_QHF_FH_JSI11i_2	154.6	133.93			1.0619	1.0731	24.795	5	4	Median	NaN	NaN	NaN	0	0	Median	1.3569	1.5409	NaN	1	0	Median	1.027	0.99073	11.29	2	2	Median	0.87542	0.96755	26.087	2	2	Median	128050000	65491000	62560000	0	0	0	29870000	12392000	17478000	57996000	26454000	31541000	40186000	26645000	13541000	38444	1824	36167	235604;235605;235606;235607;235608;235609;235610;235611;235612	316600;316601;316602;316603;316604;316605;316606;316607;316608	316608			9	
NGMVEDWDSFQAILDHTYK	1	Unmodified	2268.0157	0.015733004	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	101.25	101.13	3	3.5482E-09	89671	160511_QHF_FH_JSI10i_2	111.57	103.77			0.87534	1.0255	19.253	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72344	0.89494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0591	1.175	NaN	1	1	Median	238330000	137390000	100940000	0	0	0	113020000	70375000	42642000	0	0	0	125310000	67013000	58302000	38445	758	36168	235613;235614	316609;316610	316610			2	
NGMVLKPHFHK	2	Unmodified	1306.6968	0.69684589	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			8							4	4			31.263	29.882	3;4	0.0044249	24406	160511_QHF_FH_JSI9i_3	47.288	39.744			0.70364	0.65878	38.017	8	1	Median	0.7347	0.59924	12.462	4	1	Median	0.67857	0.79549	43.989	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	347470000	203480000	143990000	262320000	153150000	109170000	85152000	50328000	34824000	0	0	0	0	0	0	38446	1275	36169	235615;235616;235617;235618;235619;235620;235621;235622	316611;316612;316613;316614;316615;316616	316614			6	
NGMVLKPHFHK	2	Acetyl (K)	1348.7074	0.70741057	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		1	3	2	47.632	38.137	2;3;4	1.7726E-10	20775	160513_QHF_FH_JSI11Kac_6	128.36	114.24			0.23768	0.22574	136.98	5	2	Median	NaN	NaN	NaN	0	0	Median	3.9704	4.7051	NaN	1	1	Median	0.22407	0.2157	6.4362	2	0	Median	0.30078	0.33112	85.81	2	1	Median	181360000	132530000	48826000	0	0	0	18255000	7339300	10915000	147470000	113170000	34299000	15631000	12019000	3611600	38447	1275	36169	235623;235624;235625;235626;235627;235628	316617;316618;316619;316620;316621;316622	316619	1185		6	
NGMVLKPHFHK	2	Acetyl (K);Oxidation (M)	1364.7023	0.7023252	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		37.878	28.397	3	0.014424	15772	160513_QHF_FH_JSI11Kac_6	43.897	33.287			0.10531	0.10612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10531	0.10612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7256400	7027300	229140	0	0	0	0	0	0	7256400	7027300	229140	0	0	0	38448	1275	36169	235629	316623	316623	1185	909	1	
NGNLPEFGDAISTASK	1	Unmodified	1619.7791	0.77911477	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	61.912	61.236	2;3	8.1258E-06	55746	160511_QHF_FH_JSI12i_1	122.46	110.82			1.1953	1.2158	19.645	7	2	Median	1.6735	1.3751	3.6121	2	1	Median	1.0312	1.2158	NaN	1	1	Median	1.3625	1.3147	19.825	2	0	Median	0.9043	0.94109	13.747	2	0	Median	693960000	331540000	362420000	186120000	76770000	109350000	143000000	73659000	69342000	214240000	96823000	117410000	150610000	84293000	66312000	38449	5616	36170	235630;235631;235632;235633;235634;235635;235636	316624;316625;316626;316627;316628;316629;316630;316631	316628			6	
NGNQAFNEDNLK	1	Unmodified	1362.6164	0.61640654	5527	Q9Y2Q5	LAMTOR2	Ragulator complex protein LAMTOR2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	26.788	26.124	2	1.1308E-11	22883	160511_QHF_FH_JSI11i_1	154.24	139.56			1.1187	1.0951	9.6221	3	0	Median	1.6063	1.2922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1187	1.0926	NaN	1	0	Median	1.0165	1.0951	NaN	1	0	Median	132200000	64706000	67494000	40807000	21712000	19095000	0	0	0	54520000	28000000	26521000	36872000	14994000	21878000	38450	5527	36171	235637;235638;235639	316632;316633;316634	316632			3	
NGNYCVLQMDQSYKPDENEVR	1	Unmodified	2558.1166	0.11658604	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4									1	3	2	56.304	55.545	3	9.3071E-07	47490	160511_QHF_FH_JSI12i_2	95.666	87.352			1.1258	1.1026	9.7601	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1258	1.1026	9.9175	2	0	Median	0.8908	0.98026	NaN	1	1	Median	108980000	43988000	64992000	0	0	0	0	0	0	89193000	35150000	54042000	19788000	8838200	10950000	38451	1381	36172	235640;235641;235642;235643;235644;235645	316635;316636;316637;316638;316639;316640	316636			5	
NGPALQEAYVR	0	Unmodified	1216.62	0.62003536	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								1		2	2	36.406	35.671	2	0.00047803	31032	160511_QHF_FH_JSI9i_2	89.029	82.293			0.74351	0.83571	25.231	5	2	Median	1.2249	1.0562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70698	0.70168	26.715	2	2	Median	0.66453	0.71	23.055	2	0	Median	548120000	320180000	227940000	79579000	35392000	44188000	0	0	0	288250000	173800000	114460000	180290000	110990000	69300000	38452	5346	36173	235646;235647;235648;235649;235650	316641;316642;316643;316644;316645	316644			5	
NGPEFEAR	0	Unmodified	918.41954	0.41954463	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	2	2	2	17.077	15.674	2	0.0066274	12616	160511_QHF_FH_JSI11i_2	61.999	35.397			0.92615	0.97891	16.524	8	0	Median	1.2624	1.0844	14.195	2	0	Median	0.7801	0.93295	10.616	2	0	Median	1.047	1.025	16.361	2	0	Median	0.79778	0.8316	22.782	2	0	Median	763520000	396820000	366700000	172650000	82780000	89874000	199510000	110860000	88654000	205400000	105430000	99968000	185960000	97754000	88202000	38453	2676	36174	235651;235652;235653;235654;235655;235656;235657;235658	316646;316647;316648;316649;316650;316651;316652	316649			7	
NGPGFHNDIDSNSTIQEILIPASK	1	Unmodified	2566.2663	0.26634504	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.279	81.518	3	1.0294E-13	72472	160511_QHF_FH_JSI10i_2	111.67	101.86			0.91361	0.98079	6.0087	4	0	Median	1.2431	1.0513	NaN	1	0	Median	0.76891	0.92764	NaN	1	0	Median	1.0186	1.0192	NaN	1	0	Median	0.81945	0.94383	NaN	1	0	Median	248940000	122530000	126410000	39557000	18057000	21500000	75281000	40365000	34916000	67643000	30990000	36652000	66460000	33115000	33345000	38454	4118	36175	235659;235660;235661;235662	316653;316654;316655;316656;316657;316658;316659;316660;316661;316662;316663;316664;316665;316666;316667	316667			15	
NGPLEEDGERYDEDEEAAK	1	Unmodified	2164.9033	0.90326525	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.07	31.662	3	0.00052636	28452	160511_QHF_FH_JSI12i_1	60.528	56.867			0.53188	0.54635	37.055	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71775	0.71001	NaN	1	1	Median	0.39414	0.42041	NaN	1	1	Median	49835000	31865000	17970000	0	0	0	0	0	0	26641000	16434000	10207000	23194000	15431000	7763100	38455	1042	36176	235663;235664;235665	316668;316669;316670	316669			3	
NGPLNESQEDEEDSEHGTSLNR	0	Unmodified	2456.0324	0.032381939	4677	Q9H2K8	TAOK3	Serine/threonine-protein kinase TAO3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	27.567	27.011	3	0.00029668	24159	160511_QHF_FH_JSI12i_1	54.223	50.56			0.93223	0.99372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93223	0.99372	NaN	1	0	Median	23288000	13653000	9635100	0	0	0	0	0	0	0	0	0	23288000	13653000	9635100	38456	4677	36177	235666;235667	316671;316672;316673	316672			3	
NGPLPIPSEGSGFTK	1	Unmodified	1499.762	0.76200815	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.066	62.685	2	0.00092692	56736	160511_QHF_FH_JSI10i_1	64.224	49.805			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38457	2997	36178	235668	316674	316674			1	
NGQDLGVAFK	1	Unmodified	1047.5349	0.53490874	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.01	6	1	2			3				3	3	2	4	42.855	39.863	1;2	6.7694E-06	36232	160511_QHF_FH_JSI12i_1	107.69	81.886			0.79769	0.87671	125.77	12	4	Median	0.90938	0.74918	189.48	3	1	Median	0.85144	1.0027	7.4904	3	0	Plateau	0.38961	0.3838	130.77	2	1	Median	0.65281	0.70635	114.65	4	2	Median	6672600000	3012500000	3660000000	1515600000	457390000	1058200000	1674200000	811880000	862310000	1683800000	704340000	979470000	1798900000	1038900000	760000000	38458	2161	36179	235669;235670;235671;235672;235673;235674;235675;235676;235677;235678;235679;235680	316675;316676;316677;316678;316679;316680;316681;316682;316683;316684;316685;316686;316687;316688;316689;316690;316691;316692;316693;316694	316682			20	
NGQGFILVYSLVNQQSFQDIK	1	Unmodified	2397.2329	0.23286007	5598	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	95.154	86.97	3	1.4529E-47	51124	160513_QHF_FH_JSI10Kac_6	178.72	156.73			0.72386	0.7763	24.339	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56417	0.67609	NaN	1	0	Median	1.1218	1.0853	NaN	1	0	Median	0.72386	0.7763	NaN	1	0	Median	237570000	125950000	111620000	0	0	0	92146000	59433000	32713000	102510000	45419000	57086000	42921000	21096000	21825000	38459	5598	36180	235681;235682;235683	316695;316696;316697	316697			2	
NGQHVASSPIPVVISQSEIGDASR	0	Unmodified	2447.2405	0.24046464	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	3.47	2	5	5					1		4	2	5	2	67.824	66.348	3	8.0711E-35	58228	160511_QHF_FH_JSI11i_2	179.5	168.94			0.95508	1.0335	24.398	12	8	Median	1.2881	1.0981	30.827	3	3	Median	0.80437	0.96972	14.638	2	1	Median	0.9771	0.99363	18.343	5	3	Median	0.75536	0.80811	11.608	2	1	Median	2230600000	1144100000	1086500000	418650000	185040000	233610000	461970000	238140000	223830000	809820000	397920000	411900000	540110000	323010000	217100000	38460	1192	36181	235684;235685;235686;235687;235688;235689;235690;235691;235692;235693;235694;235695;235696	316698;316699;316700;316701;316702;316703;316704;316705;316706;316707;316708;316709;316710;316711;316712;316713;316714	316709			17	
NGQIDKEAVQK	2	Acetyl (K)	1270.6517	0.65172941	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	31.24	22.735	2	0.031002	13515	160513_QHF_FH_JSI12Kac_3	53.751	33.761			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4835700	4835700	0	0	0	0	0	0	0	3604600	3604600	0	1231200	1231200	0	38461	2176	36182	235697;235698	316715;316716	316716			2	
NGQLAASVETAGDSELFLMK	1	Unmodified	2080.0147	0.014670371	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.497	9	11								6	4	5	5	88.126	87.561	2;3	6.3328E-27	77041	160511_QHF_FH_JSI9i_2	216.15	195.09			0.84703	0.8547	28.727	18	9	Median	1.1751	0.96917	35.873	6	5	Median	0.67729	0.78282	16.314	3	0	Median	0.79562	0.77339	23.648	4	2	Median	0.83517	0.88282	27.576	5	2	Median	609870000	315240000	294620000	94349000	33885000	60464000	207420000	115460000	91964000	133420000	72888000	60531000	174680000	93013000	81666000	38462	2751	36183	235699;235700;235701;235702;235703;235704;235705;235706;235707;235708;235709;235710;235711;235712;235713;235714;235715;235716;235717;235718	316717;316718;316719;316720;316721;316722;316723;316724;316725;316726;316727;316728;316729;316730;316731;316732;316733;316734;316735;316736;316737;316738;316739;316740;316741;316742;316743;316744;316745;316746;316747;316748;316749;316750;316751;316752;316753;316754	316746			38	
NGQNAAVVHRFESFPAGSTLIFYK	1	Unmodified	2652.3449	0.34487013	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	80.037	71.753	4	5.9555E-22	40054	160513_QHF_FH_JSI10Kac_6	125.77	112.84			0.76856	0.83891	14.004	4	0	Linear	1.0495	0.89521	NaN	1	0	Median	0.72738	0.86978	NaN	1	0	Median	1.101	1.0786	NaN	1	0	Median	1.109	1.1583	NaN	1	0	Median	325130000	183070000	142060000	90611000	50803000	39807000	155370000	93604000	61763000	44491000	21864000	22627000	34664000	16798000	17866000	38463	2906	36184	235719;235720;235721;235722	316755;316756;316757;316758;316759	316758			5	
NGQSLGDLDGIPIAVK	1	Unmodified	1595.8519	0.85188578	4639	Q9H0R6	QRSL1	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		79.172	78.832	2	0.0077276	71767	160511_QHF_FH_JSI11i_1	48.659	40.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38464	4639	36185	235723	316760	316760			1	
NGQTEDVATGPR	0	Unmodified	1243.5793	0.57929275	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.786	10.937	2	0.0054716	8446	160511_QHF_FH_JSI9i_1	54.259	43.095			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38465	3653	36186	235724	316761	316761			1	
NGQTREHALLAYTLGVK	1	Unmodified	1870.0061	0.006095016	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	1	By MS/MS	By MS/MS			6.25	5.63			3						1	1	3			58.279	55.029	3;4	0.0032079	46453	160511_QHF_FH_JSI10i_3	49.559	39.092			2.1808	1.7996	NaN	1	0	Median	2.1808	1.7996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62979000	50642000	12337000	17512000	5175300	12337000	45467000	45467000	0	0	0	0	0	0	0	38466	2072;2231	36187	235725;235726;235727;235728	316762;316763;316764;316765	316763			4	
NGQVIGIGAGQQSR	0	Unmodified	1383.7219	0.72187466	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	31.342	28.196	2	8.399E-10	25126	160511_QHF_FH_JSI10i_1	147.58	130.86			0.83475	0.9547	22.524	11	0	Median	1.2066	0.99714	0.67371	2	0	Median	0.78844	0.95227	5.7996	3	0	Plateau	0.99889	0.98171	16.068	3	0	Median	0.55218	0.57661	30.553	3	0	Median	797330000	414870000	382460000	159640000	66646000	92991000	218930000	113320000	105610000	212270000	106090000	106180000	206490000	128810000	77679000	38467	1381	36188	235729;235730;235731;235732;235733;235734;235735;235736;235737;235738;235739	316766;316767;316768;316769;316770;316771;316772;316773;316774;316775;316776;316777;316778;316779;316780;316781;316782;316783	316773			18	
NGQYAEASALYGR	0	Unmodified	1398.6528	0.65279205	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	37.348	36.631	2	2.7846E-09	31201	160511_QHF_FH_JSI11i_2	104.82	88.57			0.59319	0.65432	46.201	7	5	Median	1.2778	1.1052	NaN	1	1	Median	0.73808	0.89018	43.533	2	0	Median	0.96827	0.94543	66.71	2	2	Median	0.48784	0.51801	29.211	2	2	Median	211420000	115970000	95446000	19535000	5420900	14114000	68400000	38322000	30078000	65079000	33156000	31923000	58403000	39072000	19331000	38468	2707	36189	235740;235741;235742;235743;235744;235745;235746;235747;235748;235749	316784;316785;316786;316787;316788;316789;316790;316791;316792;316793;316794	316793			11	
NGRVEIIANDQGNR	0	Unmodified	1554.7863	0.78626584	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.66		5	5						7	6	6	3	2	21.599	19.82	2;3	1.3184E-05	17076	160511_QHF_FH_JSI10i_2	97.273	91.994			1.1857	1.1012	64.83	10	5	Median	1.3549	1.1493	46.726	3	1	Plateau	0.64589	0.79668	70.014	5	3	Median	1.6171	1.6076	59.559	2	1	Median	NaN	NaN	NaN	0	0	Median	1311900000	681600000	630270000	445890000	191670000	254220000	770640000	445220000	325420000	95338000	44709000	50629000	0	0	0	38469	982	36190	235750;235751;235752;235753;235754;235755;235756;235757;235758;235759;235760;235761;235762;235763;235764;235765;235766	316795;316796;316797;316798;316799;316800;316801;316802;316803;316804;316805;316806;316807;316808;316809;316810;316811;316812;316813;316814;316815	316808			21	
NGSEADIDEGLYSR	0	Unmodified	1524.6692	0.66922997	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	42.973	38.667	2	1.5653E-10	34717	160511_QHF_FH_JSI10i_1	184.31	177.29			0.81599	0.96142	19.87	7	1	Median	1.3636	1.1026	NaN	1	0	Median	0.81207	0.95244	1.3267	2	0	Median	1.0667	1.0661	2.7571	2	0	Median	0.64335	0.69644	4.8464	2	1	Median	1447000000	807730000	639310000	231420000	98594000	132820000	433830000	253300000	180530000	424220000	224410000	199810000	357590000	231430000	126150000	38470	1208	36191	235767;235768;235769;235770;235771;235772;235773	316816;316817;316818;316819;316820;316821;316822;316823;316824;316825;316826	316822			11	
NGSEELVEKK	2	Unmodified	1131.5772	0.57716749	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0.632	1	3	1							1	1	1	2	14.534	14.149	3	0.063137	11236	160511_QHF_FH_JSI11i_2	9.0041	0.2748			0.3705	0.38228	64.338	5	0	Median	0.46543	0.38998	NaN	1	0	Median	0.12897	0.15786	NaN	1	0	Median	0.71214	0.72664	NaN	1	0	Median	0.24458	0.25314	58.297	2	0	Median	483570000	352750000	130820000	62213000	45790000	16423000	86157000	74998000	11159000	194190000	118220000	75968000	141010000	113740000	27273000	38471	4627	36192	235774;235775;235776;235777;235778	316827	316827			1	
NGSFANLR	0	Unmodified	877.44061	0.44061443	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	23.448	22.592	2	0.0034061	19314	160511_QHF_FH_JSI9i_2	72.789	41.486			0.78794	0.84812	13.609	4	0	Median	1.224	1.0469	NaN	1	0	Median	0.6326	0.76265	NaN	1	0	Median	0.86094	0.87967	NaN	1	0	Median	0.72112	0.8177	NaN	1	0	Median	653110000	330340000	322780000	137530000	63298000	74236000	156730000	83668000	73061000	221580000	104950000	116630000	137270000	78417000	58852000	38472	1784	36193	235779;235780;235781;235782	316828;316829;316830;316831;316832;316833;316834;316835	316830			8	
NGSFGVLVATNVAAR	0	Unmodified	1474.7892	0.78922595	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.32		5							2	2	1	3	1	68.465	64.686	2	1.5372E-11	57210	160511_QHF_FH_JSI9i_2	107.39	95.327			1.1514	1.1053	25.2	5	4	Median	1.6883	1.4796	NaN	1	1	Median	0.63297	0.74347	NaN	1	1	Median	1.1514	1.1053	7.0683	3	2	Median	NaN	NaN	NaN	0	0	Median	169340000	84886000	84457000	33373000	13472000	19901000	29593000	16652000	12941000	106380000	54763000	51615000	0	0	0	38473	4940	36194	235783;235784;235785;235786;235787;235788;235789	316836;316837;316838;316839;316840;316841;316842;316843	316840			8	
NGSIVSMNLK	1	Oxidation (M)	1077.5488	0.54884425	3913	Q92953	KCNB2	Potassium voltage-gated channel subfamily B member 2	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			66.962	66.653	2	0.018679	60368	160511_QHF_FH_JSI10i_1	52.716	18.919			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38474	3913	36195	235790	316844	316844		2344	1	
NGSLDSPGK	1	Unmodified	873.41921	0.41921028	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.276	7.9266	2	0.00018662	5745	160511_QHF_FH_JSI10i_1	86.136	61.504			0.96756	1.0417	26.024	4	0	Median	1.4812	1.2084	NaN	1	0	Median	0.92048	1.0819	NaN	1	0	Median	1.0171	1.0029	NaN	1	0	Median	0.6363	0.66555	NaN	1	0	Median	686180000	328350000	357820000	172390000	61342000	111050000	171650000	94723000	76928000	178720000	79341000	99379000	163420000	92947000	70471000	38475	5497	36196	235791;235792;235793;235794	316845;316846;316847;316848;316849	316848			5	
NGSLDSPGKQDTEEDEEEDEK	2	Unmodified	2349.9568	0.95681696	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	18.438	17.949	2;3	2.1772E-23	15358	160511_QHF_FH_JSI10i_1	168.64	164.98			0.80899	0.83287	31.654	5	2	Median	1.6919	1.3897	NaN	1	0	Median	0.80899	0.96285	NaN	1	0	Median	0.84017	0.83287	NaN	1	1	Median	0.6438	0.65374	7.9548	2	1	Median	568640000	264970000	303670000	108540000	44818000	63723000	181250000	67361000	113890000	129790000	70613000	59181000	149060000	82178000	66881000	38476	5497	36197	235795;235796;235797;235798;235799	316850;316851;316852;316853;316854;316855;316856	316853			7	
NGSLTNHFSFEK	1	Unmodified	1379.647	0.64697839	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	40.932	40.244	2	0.0029168	35245	160511_QHF_FH_JSI11i_3	68.355	57.984			0.88881	0.89974	6.6971	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99507	0.94337	NaN	1	1	Median	0.79389	0.85812	NaN	1	1	Median	67168000	32610000	34559000	0	0	0	0	0	0	24205000	10166000	14039000	42964000	22444000	20520000	38477	1205	36198	235800;235801	316857;316858	316857			2	
NGSSSDSSVGEK	1	Unmodified	1152.4895	0.48947469	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.7778	4.5511	2	1.2344E-05	2415	160511_QHF_FH_JSI12i_1	116.55	101.4			1.3242	1.3623	2.9979	3	0	Median	NaN	NaN	NaN	0	0	Median	1.149	1.3424	NaN	1	0	Median	1.4547	1.4221	NaN	1	0	Median	1.3242	1.3623	NaN	1	0	Median	242670000	112860000	129810000	0	0	0	87672000	37516000	50157000	83273000	37953000	45321000	71723000	37394000	34330000	38478	4714	36199	235802;235803;235804	316859;316860;316861	316860			2	
NGSVVAMTGDGVNDAVALK	1	Unmodified	1816.8989	0.89891233	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	64.514	63.943	2	1.5127E-15	57924	160511_QHF_FH_JSI10i_1	165.64	151.08			0.59083	0.66993	50.564	3	3	Median	NaN	NaN	NaN	0	0	Median	0.87637	0.99663	56.174	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56962	0.57966	NaN	1	1	Median	103940000	39067000	64871000	20745000	0	20745000	42571000	20644000	21927000	16151000	0	16151000	24472000	18423000	6048300	38479	2142	36200	235805;235806;235807;235808;235809	316862;316863;316864;316865;316866	316865			5	
NGTEDLPYAMK	1	Unmodified	1237.5649	0.56488824	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	42.28	41.784	2	0.0018526	37677	160511_QHF_FH_JSI11i_1	60.547	53.857			2.7554	2.8023	59.279	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8904	1.8427	NaN	1	0	Median	4.0163	4.2614	NaN	1	0	Median	107680000	33881000	73801000	0	0	0	0	0	0	58288000	22951000	35337000	49394000	10930000	38464000	38480	2701	36201	235810;235811	316867	316867			1	
NGTEDLPYAMKPIDYYTETK	2	Unmodified	2348.0882	0.088229245	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	73.935	73.284	3	1.3349E-05	66337	160511_QHF_FH_JSI10i_1	72.771	64.171			0.76484	0.90771	37.38	7	1	Median	1.5115	1.2941	NaN	1	0	Median	0.84849	1.0253	17.222	2	0	Median	0.70296	0.68729	49.996	2	1	Median	0.58165	0.61412	14.629	2	0	Median	345180000	208900000	136280000	29930000	9979100	19951000	93014000	53639000	39375000	105870000	71116000	34757000	116370000	74168000	42198000	38481	2701	36202	235812;235813;235814;235815;235816;235817;235818	316868;316869;316870;316871;316872;316873;316874;316875	316871			8	
NGTGVLILSPTR	0	Unmodified	1226.6983	0.69828568	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.5		2					2	4		1	3	3	1	62.636	54.362	2	5.6125E-12	29480	160513_QHF_FH_JSI11Kac_5	121.02	104			0.86211	0.941	18.968	8	2	Median	1.3191	1.0784	NaN	1	0	Median	0.78444	0.77257	10.892	3	1	Plateau	1.1637	1.1629	13.419	3	1	Plateau	0.60745	0.64816	NaN	1	0	Median	166280000	90101000	76183000	6010800	2573400	3437500	59301000	34968000	24333000	98678000	51068000	47609000	2294800	1491600	803130	38482	5042	36203	235819;235820;235821;235822;235823;235824;235825;235826	316876;316877;316878;316879;316880;316881;316882;316883	316880			8	
NGTKPPLDADVNLEAIAGDLR	1	Unmodified	2178.1281	0.12806065	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		88.321	87.765	3	0.00083196	77265	160511_QHF_FH_JSI11i_2	45.88	33.031			0.70202	0.68537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70202	0.68537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10375000	5401900	4973000	0	0	0	0	0	0	10375000	5401900	4973000	0	0	0	38483	285	36204	235827	316884	316884			1	
NGTLPWLRPDSK	1	Unmodified	1382.7306	0.73064844	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	52.088	51.521	2;3	0.00053393	45371	160511_QHF_FH_JSI11i_3	93.839	68.963			0.74442	0.89091	21.647	8	0	Median	1.4	1.2053	NaN	1	0	Median	0.74442	0.89091	1.9637	2	0	Median	1.1065	1.0155	26.386	3	0	Plateau	0.70955	0.71177	1.7719	2	0	Median	960750000	516570000	444180000	28632000	11994000	16638000	89264000	43789000	45475000	457950000	226160000	231790000	384910000	234630000	150280000	38484	1370	36205	235828;235829;235830;235831;235832;235833;235834;235835	316885;316886;316887;316888;316889	316886			5	
NGTQVHGTITGVDVSMNTHLK	1	Unmodified	2208.0957	0.095714659	2001	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	49.224	48.087	3	0.00029142	41289	160511_QHF_FH_JSI12i_2	50.232	42.995			0.72847	0.81268	87.126	3	0	Median	0.43577	0.37301	NaN	1	0	Median	1.7392	2.1238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72847	0.81268	NaN	1	0	Median	157790000	95809000	61981000	55616000	40331000	15284000	38120000	18612000	19508000	0	0	0	64054000	36865000	27189000	38485	2001	36206	235836;235837;235838	316890;316891;316892	316891			3	
NGTTYEGIFK	1	Unmodified	1128.5451	0.54513908	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	44.756	43.536	2	0.0038198	37178	160511_QHF_FH_JSI12i_2	56.013	44.65			1.1621	1.1141	55.103	2	1	Median	1.9347	1.645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69809	0.75461	NaN	1	0	Median	72178000	40832000	31345000	28972000	11102000	17870000	0	0	0	0	0	0	43206000	29730000	13476000	38486	3801	36207	235839;235840	316893;316894	316893			2	
NGVAPGAQILSIK	1	Unmodified	1266.7296	0.7295858	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.985	60.473	2	0.043385	52566	160511_QHF_FH_JSI11i_2	51.841	47.39			0.56644	0.55564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56644	0.55564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48712000	27763000	20949000	0	0	0	0	0	0	48712000	27763000	20949000	0	0	0	38487	1316	36208	235841	316895	316895			0	
NGVDLLMK	1	Unmodified	888.47389	0.47388839	296;4338	Q9BPX5;O15511	ARPC5L;ARPC5	Actin-related protein 2/3 complex subunit 5-like protein;Actin-related protein 2/3 complex subunit 5	no	no	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	49.976	49.071	2	0.028456	44276	160511_QHF_FH_JSI11i_1	50.607	30.325			1.5165	1.5557	19.336	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8306	1.7836	NaN	1	1	Median	1.2563	1.3569	NaN	1	1	Median	110060000	46989000	63074000	0	0	0	0	0	0	52918000	18940000	33978000	57145000	28049000	29097000	38488	4338;296	36209	235842;235843	316896;316897	316896			2	
NGVELSATRK	1	Unmodified	1073.5829	0.58292157	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		12.23	12.23	2	0.0057118	9796	160511_QHF_FH_JSI11i_3	53.756	32.456			1.597	1.4997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.597	1.4997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58745000	21758000	36987000	0	0	0	0	0	0	58745000	21758000	36987000	0	0	0	38489	5702	36210	235844	316898	316898			1	
NGVFVDGAFQR	0	Unmodified	1208.5938	0.5938206	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	51.59	50.614	2	0.00034904	43622	160511_QHF_FH_JSI11i_2	74.165	65.945			0.84764	0.88203	34.421	4	0	Median	1.0916	0.95544	NaN	1	0	Median	0.66179	0.81425	NaN	1	0	Median	1.0857	1.0772	NaN	1	0	Median	0.45001	0.49262	NaN	1	0	Median	138970000	77175000	61796000	30376000	14548000	15828000	33980000	20442000	13539000	43640000	21650000	21990000	30975000	20535000	10440000	38490	2134	36211	235845;235846;235847;235848	316899;316900;316901	316900			3	
NGVGTSSSMGSGVSDDVFSSSR	0	Unmodified	2118.9124	0.91239014	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	53.095	52.323	2	1.3025E-28	47492	160511_QHF_FH_JSI12i_1	177.44	174.31			0.97587	0.95489	15.124	5	2	Median	1.4274	1.1709	8.416	2	2	Median	0.80433	0.9462	NaN	1	0	Median	0.97587	0.95489	NaN	1	0	Median	0.8034	0.84149	NaN	1	0	Median	430490000	198340000	232150000	159810000	64069000	95745000	96513000	62973000	33540000	83667000	31821000	51845000	90499000	39479000	51020000	38491	1085	36212	235849;235850;235851;235852;235853	316902;316903;316904;316905	316903			4	
NGVMPSHFSR	0	Unmodified	1130.5291	0.52911186	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							2	4	4	6	21.64	20.956	2;3	1.5884E-05	17236	160511_QHF_FH_JSI10i_3	99.815	89.528			0.94589	0.9831	50.109	15	7	Median	2.2089	1.8699	42.77	2	1	Median	1.0064	1.2433	36.763	4	2	Median	1.0452	1.0162	13.385	4	2	Median	0.51545	0.51457	29.715	5	2	Median	4003400000	2085700000	1917700000	467920000	166180000	301740000	889220000	474030000	415190000	1561500000	723440000	838020000	1084800000	722000000	362770000	38492	1483	36213	235854;235855;235856;235857;235858;235859;235860;235861;235862;235863;235864;235865;235866;235867;235868;235869	316906;316907;316908;316909;316910;316911;316912;316913;316914;316915;316916;316917;316918;316919;316920	316913			15	
NGVMPSHFSR	0	Oxidation (M)	1146.524	0.52402648	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		20.757	20.757	2	0.0018966	17473	160511_QHF_FH_JSI11i_3	77.662	54.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38493	1483	36213	235870	316921	316921		1160	1	
NGVPAVGLK	1	Unmodified	853.50215	0.50215205	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	2	2	36.711	32.945	2	0.0054366	27862	160511_QHF_FH_JSI12i_2	57.047	38.242			0.97151	1.0567	34.029	6	1	Median	1.2867	1.0439	NaN	1	0	Median	0.82174	0.9632	14.816	2	0	Median	0.77783	0.76515	66.783	2	1	Median	1.0315	1.0705	NaN	1	0	Median	399250000	190770000	208480000	82442000	25591000	56851000	137040000	66985000	70054000	100070000	55886000	44187000	79699000	42307000	37392000	38494	1805	36214	235871;235872;235873;235874;235875;235876;235877	316922;316923;316924;316925;316926;316927	316923			6	
NGVQAMVEFDSVQSAQR	0	Unmodified	1864.8738	0.87376021	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								2	3	2	2	62.357	61.628	2	6.6816E-52	55818	160511_QHF_FH_JSI10i_1	212.95	180.94			0.83774	0.87708	30.187	6	2	Median	1.8632	1.5903	NaN	1	1	Median	0.7175	0.83336	NaN	1	0	Median	1.0775	1.0485	18.02	2	0	Median	0.67671	0.74284	3.7283	2	1	Median	261360000	127600000	133760000	29868000	7461100	22406000	82825000	37187000	45638000	80385000	37843000	42543000	68284000	45110000	23173000	38495	1063	36215	235878;235879;235880;235881;235882;235883;235884;235885;235886	316928;316929;316930;316931;316932;316933;316934;316935;316936;316937;316938;316939	316933			12	
NGVYLAK	1	Unmodified	763.42284	0.4228391	1600;2445	P46940;Q13576	IQGAP1;IQGAP2	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2	no	no	0	0	0	0			By MS/MS		2	0		1										1		18.712	18.421	2	0.045378	14896	160511_QHF_FH_JSI11i_2	44.721	27.794			0.80181	0.82205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80181	0.82205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	137440000	88201000	49244000	0	0	0	0	0	0	137440000	88201000	49244000	0	0	0	38496	1600;2445	36216	235887	316940	316940			1	
NGWMEQISGK	1	Unmodified	1148.5284	0.52844316	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			48.179	47.219	2	0.047186	41521	160511_QHF_FH_JSI10i_2	43.77	34.556			1.1571	1.3925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1571	1.3925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74025000	24666000	49359000	0	0	0	74025000	24666000	49359000	0	0	0	0	0	0	38497	2927	36217	235888	316941	316941			1	
NGYELSPTAAANFTR	0	Unmodified	1610.7689	0.76888444	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		2	1	1	2	60.151	59.287	2	3.4768E-21	51550	160511_QHF_FH_JSI11i_2	170.66	166.89			0.85574	0.93184	17.023	5	0	Median	1.3423	1.1334	NaN	1	0	Median	0.85574	1.0511	NaN	1	0	Median	0.93307	0.93184	NaN	1	0	Median	0.71887	0.78184	4.0915	2	0	Median	631350000	337770000	293580000	92447000	42256000	50190000	82798000	43460000	39338000	120200000	56719000	63486000	335900000	195340000	140570000	38498	1673	36218	235889;235890;235891;235892;235893;235894	316942;316943;316944;316945;316946;316947;316948;316949;316950	316948			9	
NGYGFINR	0	Unmodified	939.45626	0.45626449	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	2	1	2	3	35.072	31.912	2	0.00056343	28165	160511_QHF_FH_JSI10i_2	104.11	93.238			0.76665	0.8124	50.697	7	0	Median	1.3987	1.1766	10.136	2	0	Median	0.76665	0.93897	NaN	1	0	Median	0.47284	0.46952	77.538	2	0	Median	0.59764	0.65728	4.3166	2	0	Median	2380800000	1218500000	1162200000	464730000	165970000	298760000	608840000	341790000	267060000	821630000	435150000	386480000	485560000	275620000	209940000	38499	2066;1106	36219	235895;235896;235897;235898;235899;235900;235901;235902	316951;316952;316953;316954;316955;316956;316957;316958;316959	316957			9	
NGYGTPMTSNAVR	0	Unmodified	1366.6299	0.62994811	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.246	27.927	2	0.00030402	24768	160511_QHF_FH_JSI10i_1	71.555	51.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38500	5701	36220	235903	316960	316960			1	
NGYPDLIVGAFGVDR	0	Unmodified	1591.7995	0.79945628	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	91.256	90.385	2	0.014764	78024	160511_QHF_FH_JSI12i_2	57.175	42.484			0.53072	0.58486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53072	0.58486	NaN	1	0	Median	27454000	19301000	8152500	0	0	0	0	0	0	0	0	0	27454000	19301000	8152500	38501	859	36221	235904	316961	316961			1	
NGYPIPQVIWYK	1	Unmodified	1476.7765	0.776536	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	86.179	82.618	2	0.00012094	41460	160513_QHF_FH_JSI11Kac_6	90.15	65.359			0.8088	0.84097	13.199	6	0	Median	1.1539	0.9545	NaN	1	0	Median	0.64513	0.78943	NaN	1	0	Median	0.96451	0.94594	17.632	2	0	Median	0.71113	0.79532	8.8922	2	0	Median	235890000	125570000	110320000	25643000	9720400	15923000	44210000	20536000	23674000	100590000	52550000	48037000	65452000	42768000	22684000	38502	1554	36222	235905;235906;235907;235908;235909;235910	316962;316963;316964;316965;316966	316962			5	
NHAAPFSK	1	Unmodified	870.4348	0.43480077	1417;3852	P34932;Q92598	HSPA4;HSPH1	Heat shock 70 kDa protein 4;Heat shock protein 105 kDa	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		8	4						4	6	4	3	3	9.817	7.5408	2;3	0.00094656	6427	160511_QHF_FH_JSI9i_2	62.546	43.069			1.0003	0.91633	32.02	16	4	Median	1.0368	0.88385	43.751	6	3	Median	0.61868	0.73513	34.408	4	1	Median	1.1412	1.1681	16.01	3	0	Median	0.93587	1.0312	12.047	3	0	Median	6358100000	2900600000	3457500000	1184700000	467410000	717260000	1472500000	780660000	691860000	2499400000	1073100000	1426300000	1201600000	579450000	622160000	38503	1417;3852	36223	235911;235912;235913;235914;235915;235916;235917;235918;235919;235920;235921;235922;235923;235924;235925;235926	316967;316968;316969;316970;316971;316972;316973;316974;316975;316976;316977;316978;316979;316980;316981;316982;316983;316984;316985;316986;316987;316988;316989	316976			23	
NHAPGATEAFK	1	Unmodified	1141.5516	0.55162144	5114	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	14.219	13.368	2	0.00085583	10598	160511_QHF_FH_JSI12i_2	79.148	65.569			0.68341	0.74917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68341	0.74917	NaN	1	1	Median	19558000	11604000	7954800	0	0	0	0	0	0	0	0	0	19558000	11604000	7954800	38504	5114	36224	235927	316990	316990			1	
NHCGIASAASYPTV	0	Unmodified	1446.6562	0.65616287	875	P07711	CTSL	Cathepsin L1;Cathepsin L1 heavy chain;Cathepsin L1 light chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	43.553	42.77	2	0.0001306	36588	160511_QHF_FH_JSI12i_2	112.11	104.06			1.0566	1.1983	39.898	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0079	1.032	55.09	2	2	Median	1.0566	1.1983	NaN	1	1	Median	82038000	39562000	42476000	0	0	0	0	0	0	47211000	26105000	21106000	34827000	13457000	21370000	38505	875	36225	235928;235929;235930	316991;316992;316993	316991			3	
NHDHKMEK	2	Acetyl (K)	1079.4818	0.48182731	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	2	4	3	7.5598	-0.43302	3	0.0030804	2848	160513_QHF_FH_JSI11Kac_6	64.04	56.395			0.94361	0.94886	166.62	7	3	Median	1.3558	1.1252	NaN	1	0	Median	0.094327	0.1119	NaN	1	1	Median	0.85997	0.84841	140.44	3	1	Median	3.2682	3.693	163.04	2	1	Median	46534000	29648000	16886000	6018800	2673700	3345100	11082000	10736000	345850	16598000	10811000	5787900	12835000	5428500	7406900	38506	2285	36226	235931;235932;235933;235934;235935;235936;235937;235938;235939;235940;235941;235942	316994;316995;316996;316997;316998;316999;317000;317001;317002;317003;317004;317005;317006;317007;317008;317009	316996	2399		16	
NHEEEMNALR	0	Unmodified	1241.5459	0.54588413	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	2	4	15.344	14.67	2;3	6.0111E-05	12105	160511_QHF_FH_JSI9i_2	91.069	81.481		+	1.1877	1.0087	52.105	9	2	Median	0.94974	0.80967	31.082	2	0	Median	0.65927	0.81808	3.5689	2	0	Median	1.5154	1.557	10.14	2	0	Median	2.4997	2.6934	67.441	3	2	Plateau	519360000	252510000	266850000	121110000	62586000	58522000	102600000	69673000	32927000	185070000	73260000	111810000	110580000	46987000	63597000	38507	65	36227	235943;235944;235945;235946;235947;235948;235949;235950;235951;235952	317010;317011;317012;317013;317014;317015;317016;317017;317018;317019;317020	317014			11	
NHEIVPGSLIASIASLK	1	Unmodified	1747.9832	0.98323431	4483	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	96.95	96.958	3	2.0756E-05	83908	160511_QHF_FH_JSI12i_3	81.317	62.586			0.99425	0.96483	18.48	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1656	1.0995	NaN	1	0	Median	0.84807	0.84664	NaN	1	0	Median	115400000	61939000	53466000	0	0	0	0	0	0	37586000	18332000	19254000	77818000	43607000	34212000	38508	4483	36228	235953;235954	317021;317022;317023;317024;317025	317024			5	
NHELSGLNK	1	Unmodified	1010.5145	0.51450765	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.29	11.084	2	0.010474	8539	160511_QHF_FH_JSI11i_2	59.245	49.657			1.4602	1.4392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4602	1.4392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54832000	16500000	38332000	0	0	0	0	0	0	54832000	16500000	38332000	0	0	0	38509	3250	36229	235955	317026	317026			1	
NHFLVGLLLR	0	Unmodified	1180.7081	0.7080625	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.887	75.291	3	1.6293E-05	41380	160513_QHF_FH_JSI10Kac_6	89.886	49.162			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38510	4555	36230	235956	317027	317027			1	
NHFPGEAETLYNSLEPSYQK	1	Unmodified	2323.0757	0.075690724	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.281	69.988	3	0.010652	60333	160511_QHF_FH_JSI12i_2	35.133	18.054			1.3493	1.4915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3493	1.4915	NaN	1	1	Median	8616400	2640800	5975600	0	0	0	0	0	0	0	0	0	8616400	2640800	5975600	38511	476	36231	235957	317028	317028			1	
NHIILLTK	1	Unmodified	950.5913	0.59130141	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			43.795	35.18	3	0.042095	19468	160513_QHF_FH_JSI10Kac_6	28.096	3.8745			0.29773	0.35349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29773	0.35349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3822900	3172600	650260	0	0	0	3822900	3172600	650260	0	0	0	0	0	0	38512	3935	36232	235958	317029	317029			1	
NHIILQENAQHATR	0	Unmodified	1643.8492	0.84920044	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	16.711	16.763	3	1.6518E-05	13438	160511_QHF_FH_JSI12i_3	77.372	65.604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38513	3032	36233	235959	317030	317030			1	
NHINNELK	1	Unmodified	980.50394	0.50394296	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		8.0683	7.8712	2	0.005541	5740	160511_QHF_FH_JSI10i_2	62.546	29.706			0.72952	0.7397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72952	0.7397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110510000	51042000	59471000	0	0	0	0	0	0	110510000	51042000	59471000	0	0	0	38514	3896	36234	235960;235961	317031;317032	317032			2	
NHIPITEQGDAPR	0	Unmodified	1446.7215	0.72154031	3807	Q8WXD5	GEMIN6	Gem-associated protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	3	2	23.513	22.763	2;3	2.607E-05	18999	160511_QHF_FH_JSI12i_2	71.558	63.947			1.0956	1.2875	48.24	6	5	Median	NaN	NaN	NaN	0	0	Median	1.1384	1.3886	NaN	1	1	Median	1.3686	1.3722	74.136	3	3	Median	0.97305	1.0857	15.089	2	1	Median	182390000	91744000	90642000	0	0	0	19396000	13063000	6332900	103210000	46010000	57204000	59776000	32671000	27105000	38515	3807	36235	235962;235963;235964;235965;235966;235967;235968;235969	317033;317034;317035;317036;317037;317038;317039;317040;317041	317033			9	
NHIPVFSPALTDGSLGDMIFFHSYK	1	Unmodified	2792.3632	0.36322231	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	92.793	83.351	4	1.2054E-05	45092	160513_QHF_FH_JSI12Kac_6	71.052	68.42			1.2184	1.3161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2184	1.3161	NaN	1	0	Median	58051000	28262000	29788000	0	0	0	0	0	0	0	0	0	58051000	28262000	29788000	38516	1654	36236	235970	317042	317042			1	
NHIQLVK	1	Unmodified	850.50249	0.5024864	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	15.836	14.995	3	0.0073496	12318	160511_QHF_FH_JSI9i_2	47.743	27.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38517	4939	36237	235971;235972	317043;317044	317044			2	
NHLGSYECK	1	Unmodified	1106.4815	0.48149296	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		9.3511	9.1526	2	0.013241	6728	160511_QHF_FH_JSI11i_2	46.462	37.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38518	2672	36238	235973	317045	317045			1	
NHMDITTPPLPPVAPEVLR	0	Unmodified	2096.1088	0.10884553	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	87.483	86.881	3	2.8909E-09	77088	160511_QHF_FH_JSI10i_2	83.666	66.982			0.91172	0.9674	11.157	6	4	Median	1.0382	0.87802	16.988	2	2	Median	0.82656	1.02	10.025	2	2	Median	0.97311	0.97738	NaN	1	0	Median	0.83725	0.95752	NaN	1	0	Median	307520000	164470000	143060000	73486000	36285000	37201000	118430000	70553000	47873000	68623000	32014000	36608000	46986000	25613000	21373000	38519	5147	36239	235974;235975;235976;235977;235978;235979	317046;317047;317048;317049;317050;317051;317052	317051			7	
NHMWIFVNALIENPTFDSQTK	1	Unmodified	2504.2158	0.21582979	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	93.467	85.442	3	1.3316E-10	49919	160513_QHF_FH_JSI10Kac_6	160.47	146.74			1.0628	1.0825	61.992	6	6	Median	0.78316	0.67482	71.624	2	2	Median	0.63877	0.76227	83.14	2	2	Median	1.8865	1.7921	NaN	1	1	Median	0.9791	1.0464	NaN	1	1	Median	740690000	340300000	400390000	230610000	119670000	110930000	314450000	182970000	131480000	130850000	23676000	107170000	64788000	13986000	50802000	38520	999	36240	235980;235981;235982;235983;235984;235985	317053;317054;317055;317056;317057;317058;317059;317060	317060			8	
NHPAPFSK	1	Unmodified	896.45045	0.45045083	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	10.011	9.558	2	0.011182	7447	160511_QHF_FH_JSI10i_2	59.245	59.245			0.62688	0.63319	31.874	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74673	0.92123	NaN	1	0	Median	0.62688	0.63319	NaN	1	0	Median	1.0908	1.1936	NaN	1	0	Median	251810000	141970000	109840000	0	0	0	77622000	43577000	34044000	112130000	67421000	44704000	62063000	30974000	31089000	38521	723	36241	235986;235987;235988	317061;317062;317063;317064;317065	317065			5	
NHPAVVMWSVANEPASHLESAGYYLK	1	Unmodified	2869.3857	0.38574867	896	P08236	GUSB	Beta-glucuronidase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		83.898	83.898	4	0.041484	74868	160511_QHF_FH_JSI11i_3	16.938	14.562			1.0525	0.95793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0525	0.95793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32296000	13640000	18656000	0	0	0	0	0	0	32296000	13640000	18656000	0	0	0	38522	896	36242	235989	317066	317066			1	
NHPGLLLMDTTFR	0	Unmodified	1513.7711	0.77113304	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.59		6	1						1	2	2	2	2	70.712	68.791	2;3	1.5405E-22	60532	160511_QHF_FH_JSI11i_2	137.55	127.5			0.85696	0.95299	27.097	7	1	Median	0.83569	0.71362	55.711	2	1	Median	0.73954	0.89837	NaN	1	0	Median	1.0274	1.0028	2.7143	2	0	Median	0.80986	0.89423	9.0004	2	0	Median	441750000	207550000	234210000	101900000	41686000	60211000	73038000	39119000	33919000	144960000	69889000	75072000	121860000	56853000	65003000	38523	1002	36243	235990;235991;235992;235993;235994;235995;235996;235997	317067;317068;317069;317070;317071;317072;317073;317074;317075;317076;317077;317078;317079;317080	317075			14	
NHPMTPEAVK	1	Oxidation (M)	1138.5441	0.54409322	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	13.487	12.697	2	0.0069915	10000	160511_QHF_FH_JSI12i_2	54.982	45.394			0.87524	0.95742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87524	0.95742	NaN	1	0	Median	22200000	11404000	10796000	0	0	0	0	0	0	0	0	0	22200000	11404000	10796000	38524	1747	36244	235998	317081	317081		1432	1	
NHPMTPEAVK	1	Unmodified	1122.5492	0.5491786	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	2	3	13.064	12.515	2;3	0.0096603	9667	160511_QHF_FH_JSI11i_2	58.433	44.135			0.60603	0.74521	50.932	7	4	Median	0.51888	0.44159	NaN	1	1	Median	0.60583	0.74927	0.76702	2	0	Median	1.0839	1.0872	72.783	2	2	Median	0.80662	0.88989	67.499	2	1	Median	597880000	352060000	245820000	81731000	51440000	30290000	164750000	115020000	49727000	123170000	51768000	71399000	228240000	133830000	94406000	38525	1747	36244	235999;236000;236001;236002;236003;236004;236005;236006	317082;317083;317084;317085;317086;317087;317088	317087			7	
NHPQMIAVLVDK	1	Unmodified	1363.7282	0.7282056	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.8	5.6		4							1	1		2	2	56.39	53.593	2;3	0.000143	46001	160511_QHF_FH_JSI11i_2	81.431	71.999			0.72138	0.81916	66.243	5	3	Median	0.28189	0.24414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96779	0.95786	55.248	2	2	Median	0.79057	0.90064	13.411	2	0	Median	227130000	121110000	106020000	30171000	24202000	5969100	0	0	0	82035000	37958000	44077000	114930000	58951000	55975000	38526	2284	36245	236007;236008;236009;236010;236011	317089;317090;317091;317092;317093;317094	317094			5	
NHQDVAGVFALSSFLNK	1	Unmodified	1845.9373	0.93734675	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	94.504	94.145	3	0.00011493	82672	160511_QHF_FH_JSI11i_2	63.681	46.602			1.0561	1.05	29.041	5	3	Median	1.2962	1.0978	56.117	2	2	Median	0.83227	1.0147	NaN	1	1	Median	1.0561	1.05	NaN	1	0	Median	1.1386	1.2372	NaN	1	0	Median	77287000	44131000	33156000	19308000	9655200	9652600	18713000	10177000	8535900	26755000	17806000	8949000	12512000	6492900	6018800	38527	2996	36246	236012;236013;236014;236015;236016;236017	317095;317096;317097;317098;317099;317100;317101;317102;317103	317101			9	
NHQNLLDSLEQYVK	1	Unmodified	1699.8529	0.85294842	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	86.502	85.801	3	3.4595E-05	74182	160511_QHF_FH_JSI12i_2	110.38	99.109			1.053	1.0773	13.165	3	1	Plateau	1.0134	0.85911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.053	1.0773	NaN	1	0	Median	1.0369	1.0809	NaN	1	1	Median	46679000	23483000	23196000	9150100	4167600	4982500	0	0	0	20878000	9682900	11195000	16651000	9632000	7018700	38528	3921	36247	236018;236019;236020	317104;317105	317104			1	
NHSDSSTSESEVSSVSPLK	1	Unmodified	1975.8971	0.89705766	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	33.743	32.603	3	9.934E-05	27678	160511_QHF_FH_JSI12i_2	75.239	65.956			1.4224	1.6124	19.651	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1931	1.4032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6958	1.8527	NaN	1	1	Median	34685000	12207000	22477000	0	0	0	16501000	5895000	10607000	0	0	0	18183000	6312500	11871000	38529	5118	36248	236021;236022	317106;317107	317106			2	
NHSTVTVEEAK	1	Unmodified	1213.5939	0.59388018	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.4		7						2		2	2	3	2	10.26	7.7757	2;3	1.7186E-06	6540	160511_QHF_FH_JSI11i_2	112.71	106.4			1.7409	1.0762	64.423	9	5	Linear	0.64523	0.54569	68.325	2	1	Median	0.76306	0.93761	39.134	2	2	Median	2.0344	2.0609	85.223	3	2	Plateau	1.0541	1.1777	12.744	2	0	Median	450850000	187070000	263770000	44580000	22434000	22146000	91767000	48944000	42823000	190300000	61750000	128550000	124200000	53944000	70255000	38530	2494	36249	236023;236024;236025;236026;236027;236028;236029;236030;236031	317108;317109;317110;317111;317112;317113;317114;317115;317116;317117;317118;317119	317114			12	
NHTIPGFQQAS	0	Unmodified	1198.5731	0.57308516	4867	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.175	33.242	2	0.00056876	28379	160511_QHF_FH_JSI11i_2	70.056	45.235			0.9649	1.0601	18.924	4	1	Median	1.5368	1.3232	NaN	1	0	Median	0.93895	1.1442	NaN	1	0	Median	0.99157	0.98222	NaN	1	0	Median	0.79724	0.85418	NaN	1	1	Median	163030000	82736000	80295000	41460000	17731000	23729000	35608000	19658000	15950000	43881000	22703000	21178000	42083000	22645000	19438000	38531	4867	36250	236032;236033;236034;236035	317120;317121;317122;317123;317124;317125;317126	317123			7	
NHTLALTETGSVFAFGENK	1	Unmodified	2035.0011	0.0010692176	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	3	1	1	74.891	74.054	2;3	2.6407E-05	65214	160511_QHF_FH_JSI9i_2	88.471	73.543			0.94891	1.0609	31.736	5	3	Median	1.2985	1.1051	NaN	1	1	Median	0.66064	0.79975	51.897	2	2	Median	0.7419	0.74227	NaN	1	0	Median	0.94891	1.0609	NaN	1	0	Median	410640000	192950000	217690000	83847000	33778000	50070000	149870000	80336000	69536000	106130000	40057000	66069000	70791000	38778000	32014000	38532	5200	36251	236036;236037;236038;236039;236040;236041	317127;317128;317129;317130;317131;317132;317133	317129			7	
NHTLQEQVTQLTEK	1	Unmodified	1667.8479	0.84786304	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			48.565	47.605	3	0.057351	41921	160511_QHF_FH_JSI10i_2	24.429	1.3561			0.64103	0.78428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64103	0.78428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32009000	25582000	6426800	0	0	0	32009000	25582000	6426800	0	0	0	0	0	0	38533	2627	36252	236042	317134	317134			1	
NHTLSELLQLR	0	Unmodified	1322.7306	0.73064844	4165	Q96LD4	TRIM47	Tripartite motif-containing protein 47	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	69.993	69.695	3	0.0044019	60297	160511_QHF_FH_JSI12i_3	37.144	29.04			1.3211	1.4371	171.45	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3211	1.4371	171.45	2	2	Median	16265000	5848000	10417000	0	0	0	0	0	0	0	0	0	16265000	5848000	10417000	38534	4165	36253	236043;236044;236045	317135;317136;317137	317136			3	
NHVCQYYIYELQK	1	Unmodified	1756.8243	0.82429083	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	61.214	51.76	2;3	1.8468E-08	27083	160513_QHF_FH_JSI12Kac_6	116.55	108.03			1.1013	1.0423	15.654	6	0	Median	1.1614	0.9921	NaN	1	0	Median	0.72092	0.85207	NaN	1	0	Median	0.98325	0.96783	17.456	2	0	Median	1.1064	1.1988	3.4998	2	0	Median	138450000	66213000	72234000	21736000	8532000	13204000	37200000	18622000	18578000	30448000	14612000	15836000	49062000	24447000	24615000	38535	4989	36254	236046;236047;236048;236049;236050;236051	317138;317139;317140;317141;317142;317143;317144	317141			7	
NHVGKPLLK	2	Unmodified	1004.6131	0.61309948	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.113	10.207	2	0.033953	7551	160511_QHF_FH_JSI12i_3	54.157	46.927			1.6205	1.6343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6205	1.6343	NaN	1	0	Median	56107000	20127000	35980000	0	0	0	0	0	0	0	0	0	56107000	20127000	35980000	38536	2844	36255	236052	317145;317146	317146			2	
NHVQPYIPSILEALMVPTSQGFTEVR	0	Unmodified	2925.5059	0.50586381	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.51	102.37	3	5.9464E-10	90077	160511_QHF_FH_JSI11i_2	77.241	70.517			1.1129	1.1635	4.5956	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1117	1.1263	NaN	1	0	Median	1.114	1.2019	NaN	1	0	Median	210500000	109320000	101180000	0	0	0	0	0	0	127640000	59456000	68182000	82858000	49862000	32996000	38537	4260	36256	236053;236054	317147;317148	317148			2	
NHYIPLVGIK	1	Unmodified	1152.6655	0.66552898	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		54.319	53.6	3	0.001178	46308	160511_QHF_FH_JSI11i_2	54.539	50.241			1.2391	1.3968	19.564	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2536	1.604	NaN	1	1	Median	1.2247	1.2163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42454000	23070000	19384000	0	0	0	13325000	5698000	7626900	29129000	17372000	11757000	0	0	0	38538	4140	36257	236055;236056	317149;317150	317149			2	
NHYNEEMSNLR	0	Unmodified	1405.6045	0.60446165	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.659	20.35	2	0.00034444	16736	160511_QHF_FH_JSI11i_2	82.749	68.543			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38539	1085	36258	236057	317151	317151			1	
NIAAERK	1	Unmodified	800.45045	0.45045083	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	5.1996	4.9526	2	0.010399	2898	160511_QHF_FH_JSI10i_2	75.738	36.947			1.0078	1.0867	9.5688	6	0	Median	1.3857	1.1234	NaN	1	0	Median	0.86094	1.0134	15.73	2	0	Median	1.1238	1.1088	7.5353	2	0	Median	0.99044	0.99592	NaN	1	0	Median	925280000	500150000	425130000	132830000	47864000	84970000	253190000	139640000	113550000	347620000	196550000	151070000	191630000	116100000	75536000	38540	2560	36259	236058;236059;236060;236061;236062;236063	317152;317153;317154;317155;317156	317153			5	
NIAAFGGNPK	1	Unmodified	987.51378	0.51377937	846	P06276	BCHE	Cholinesterase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				10.709	9.9982	3	0.054822	7441	160511_QHF_FH_JSI9i_3	12.576	0.84525			1.3637	1.1066	NaN	1	0	Median	1.3637	1.1066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123040000	32964000	90075000	123040000	32964000	90075000	0	0	0	0	0	0	0	0	0	38541	846	36260	236064	317157	317157			1	
NIADLMTQAGVEELESENK	1	Unmodified	2089.9838	0.98376417	537	O75506	HSBP1	Heat shock factor-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		93.642	93.314	2;3	9.406E-06	81937	160511_QHF_FH_JSI11i_2	86.291	64.245			4.5551	4.1598	63.145	3	3	Plateau	1.7473	1.5465	NaN	1	1	Median	1.1911	1.406	NaN	1	1	Median	4.5957	4.3884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82545000	28104000	54441000	32758000	10338000	22420000	17219000	7278400	9941100	32567000	10488000	22080000	0	0	0	38542	537	36261	236065;236066;236067;236068	317158;317159;317160;317161;317162	317161			5	
NIAFFSTNCVEGTAR	0	Unmodified	1685.7832	0.78315429	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	68.099	67.199	2	3.3808E-13	59061	160511_QHF_FH_JSI9i_2	116.01	81.633			0.52863	0.62579	73.959	7	7	Median	0.52863	0.461	NaN	1	1	Median	0.94727	1.1619	87.509	2	2	Median	1.0673	1.0821	111.05	2	2	Median	0.83183	0.95124	80.347	2	2	Median	335770000	173320000	162440000	24186000	18102000	6083500	72215000	38256000	33958000	132600000	58553000	74045000	106770000	58412000	48356000	38543	821	36262	236069;236070;236071;236072;236073;236074;236075;236076	317163;317164;317165;317166;317167;317168;317169;317170;317171	317166			9	
NIAFYYENENVK	1	Unmodified	1502.7042	0.70415892	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	56.819	56.312	2	4.1841E-05	48189	160511_QHF_FH_JSI12i_2	87.298	74.342			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8198400	0	8198400	0	0	0	0	0	0	8198400	0	8198400	0	0	0	38544	3454	36263	236077;236078;236079;236080;236081	317172;317173;317174;317175;317176	317172			5	
NIAIEFLTLENEIFR	0	Unmodified	1820.9672	0.96724989	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		103.31	103.21	2	5.1915E-07	91015	160511_QHF_FH_JSI11i_2	138.42	112.38			1.0307	1.0453	25.039	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0307	1.0453	25.039	2	2	Median	NaN	NaN	NaN	0	0	Median	67557000	32904000	34653000	0	0	0	0	0	0	67557000	32904000	34653000	0	0	0	38545	4989	36264	236082;236083	317177;317178	317178			2	
NIAIQSQFTR	0	Unmodified	1176.6251	0.62512073	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.51		5						4	5	2	3	4	5	50.63	44.666	2	7.7619E-06	38446	160511_QHF_FH_JSI12i_2	116.3	90.365			1.0986	1.0608	67.38	10	5	Median	1.1861	1.0047	NaN	1	0	Median	0.65873	0.78248	12.237	2	1	Median	1.2118	1.1903	68.11	4	2	Median	1.0176	1.12	102.08	3	2	Median	420840000	205270000	215570000	4671600	2254400	2417200	70828000	41502000	29326000	200970000	87815000	113160000	144370000	73696000	70673000	38546	1016	36265	236084;236085;236086;236087;236088;236089;236090;236091;236092;236093;236094;236095;236096;236097	317179;317180;317181;317182;317183;317184;317185;317186;317187;317188;317189;317190;317191;317192;317193;317194;317195;317196	317180			18	
NIANPTAMLLSASNMLR	0	Unmodified	1815.9335	0.9335237	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.68	101.58	2	4.4996E-06	89314	160511_QHF_FH_JSI11i_2	136.33	112.95			1.1325	1.1524	28.651	4	3	Median	1.1534	0.97906	NaN	1	0	Median	1.112	1.3565	NaN	1	1	Median	0.77945	0.78988	NaN	1	1	Median	1.3072	1.4585	NaN	1	1	Median	654640000	312670000	341970000	165750000	73010000	92737000	123860000	60948000	62912000	195450000	110960000	84497000	169580000	67755000	101820000	38547	386	36266	236098;236099;236100;236101	317197;317198;317199;317200	317199			4	
NIANPTATLLASCMMLDHLK	1	Unmodified	2213.1007	0.10066538	1738	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	101.11	100.97	3	8.2322E-15	86827	160511_QHF_FH_JSI12i_2	144.01	129.24			0.79268	0.9229	0.87403	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7508	0.91721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83689	0.92862	NaN	1	1	Median	266280000	144660000	121620000	0	0	0	124720000	70583000	54140000	0	0	0	141560000	74075000	67485000	38548	1738	36267	236102;236103	317201;317202	317201			2	
NIAPNISR	0	Unmodified	883.48756	0.48756462	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	24.947	24.071	2	0.044219	20695	160511_QHF_FH_JSI9i_2	38.55	8.3647			0.91659	0.91907	2.6825	3	0	Plateau	1.0956	0.96444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91659	0.91907	NaN	1	0	Median	0.82559	0.92243	NaN	1	0	Median	532570000	254560000	278010000	128340000	57788000	70553000	0	0	0	236370000	108380000	127990000	167860000	88394000	79467000	38549	4521	36268	236104;236105;236106	317203	317203			1	
NIAQHYGMSYLLETLEWLLQK	1	Unmodified	2549.2988	0.29883114	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.06	95.339	3	2.1973E-37	56228	160513_QHF_FH_JSI10Kac_6	168.27	152.76			0.53334	0.63119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53334	0.63119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100590000	65644000	34950000	0	0	0	100590000	65644000	34950000	0	0	0	0	0	0	38550	2257	36269	236107	317204;317205	317204			2	
NIATQLESSWELHTNR	0	Unmodified	1897.9282	0.92823863	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	70.933	69.946	3	0.015364	61994	160511_QHF_FH_JSI10i_2	38.723	34.772			0.91988	0.8288	43.61	3	1	Plateau	0.91988	0.8288	NaN	1	0	Median	0.28894	0.35947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61268	0.67826	NaN	1	0	Median	95679000	59781000	35898000	46921000	28466000	18455000	27686000	20184000	7502700	0	0	0	21072000	11132000	9940800	38551	5409	36270	236108;236109;236110	317206;317207;317208	317208			3	
NIATYYGAFIK	1	Unmodified	1259.655	0.65502388	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS				16	0									1	1				79.031	70.402	2	0.0060969	38006	160513_QHF_FH_JSI9Kac_6	65.535	39.597			1.8338	1.5552	NaN	1	1	Median	1.8338	1.5552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56790000	30183000	26607000	56790000	30183000	26607000	0	0	0	0	0	0	0	0	0	38552	733;3526	36271	236111	317209;317210	317209			2	
NIAVGKDPLEGQR	1	Unmodified	1395.747	0.74702678	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		36.581	36.147	2	0.0008476	30838	160511_QHF_FH_JSI11i_2	73.781	59.115			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38553	102	36272	236112	317211	317211			1	
NICFTVWDVGGQDR	0	Unmodified	1665.7569	0.75693954	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.663	82.568	2	0.00084197	71324	160511_QHF_FH_JSI12i_2	86.028	79.329			1.2975	1.4243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2975	1.4243	NaN	1	1	Median	27343000	12179000	15164000	0	0	0	0	0	0	0	0	0	27343000	12179000	15164000	38554	1137	36273	236113	317212	317212			1	
NICKVVEVGSK	2	Acetyl (K)	1273.67	0.67002202	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		60.116	49.081	2	8.4395E-05	28022	160513_QHF_FH_JSI11Kac_4	99.343	52.953			0.23978	0.23532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23978	0.23532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12736000	10553000	2183200	0	0	0	0	0	0	12736000	10553000	2183200	0	0	0	38555	1055	36274	236114	317213	317213	885		1	
NICQFLVEIGLAK	1	Unmodified	1503.8119	0.81193523	1522	P41567	EIF1	Eukaryotic translation initiation factor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	102.12	102.02	2	1.2427E-12	87908	160511_QHF_FH_JSI12i_2	125.72	100.33			1.0271	1.0555	27.424	4	0	Median	1.1226	0.96449	NaN	1	0	Median	0.93979	1.1552	NaN	1	0	Median	0.76157	0.77034	NaN	1	0	Median	1.3194	1.4711	NaN	1	0	Median	375090000	201190000	173900000	24661000	11349000	13311000	77155000	36430000	40725000	175110000	99623000	75482000	98169000	53785000	44384000	38556	1522	36275	236115;236116;236117;236118;236119	317214;317215;317216;317217;317218;317219	317215			6	
NICQQVNIK	1	Unmodified	1115.5757	0.5757277	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.82	4.82	4	5					2				4	3	4	32.609	30.259	2	1.268E-05	25593	160511_QHF_FH_JSI11i_2	125.25	111.1			2.3961	2.6038	95.744	11	11	Median	NaN	NaN	NaN	0	0	Median	1.0922	1.3388	121.25	4	4	Median	2.8455	2.8078	34.929	3	3	Median	2.0586	2.2183	93.152	4	4	Median	541190000	210920000	330270000	0	0	0	230960000	121140000	109830000	164310000	39518000	124790000	145910000	50264000	95644000	38557	2502	36276	236120;236121;236122;236123;236124;236125;236126;236127;236128;236129;236130	317220;317221;317222;317223;317224;317225;317226;317227;317228;317229;317230	317227			11	
NICSKYSVR	1	Acetyl (K)	1167.5706	0.57064232	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		41.529	31.666	2	0.0023678	17376	160513_QHF_FH_JSI11Kac_6	85.676	66.581			0.44876	0.4497	57.76	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44876	0.4497	57.76	2	1	Median	NaN	NaN	NaN	0	0	Median	22081000	17415000	4665500	0	0	0	0	0	0	22081000	17415000	4665500	0	0	0	38558	3603	36277	236131;236132	317231;317232	317231	2889		2	
NIDDGTSDRPYSHALVAGIDR	0	Unmodified	2271.088	0.087986745	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							4	3	5	2	50.678	50.087	3;4	2.628E-16	44022	160511_QHF_FH_JSI11i_3	140.73	121.44			0.94314	0.97679	13.128	11	1	Median	1.3572	1.1549	23.333	3	1	Plateau	0.81457	0.99294	5.5206	2	0	Median	0.94227	0.89757	11.082	4	0	Median	0.96352	1.0276	7.1726	2	0	Median	1675100000	850470000	824590000	289970000	134090000	155880000	344590000	154920000	189670000	849350000	449370000	399980000	191150000	112090000	79057000	38559	1953	36278	236133;236134;236135;236136;236137;236138;236139;236140;236141;236142;236143;236144;236145;236146	317233;317234;317235;317236;317237;317238;317239;317240;317241;317242;317243;317244;317245;317246;317247;317248;317249;317250;317251;317252;317253	317234			20	
NIDDGTSDRPYSHALVAGIDRYPR	0	Unmodified	2687.3052	0.30519016	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	2	By MS/MS				3	0			3							3				59.511	57.976	4;5	0.00046224	47828	160511_QHF_FH_JSI9i_3	42.612	39.277			1.1933	0.98162	30.357	3	1	Median	1.1933	0.98162	30.357	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99975000	48164000	51811000	99975000	48164000	51811000	0	0	0	0	0	0	0	0	0	38560	1953	36279	236147;236148;236149	317254;317255;317256	317255			3	
NIDEHANEDVER	0	Unmodified	1439.6277	0.62769951	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	2.64	10	11					1			5	6	5	6	15.429	14.429	2;3	5.6649E-10	11970	160511_QHF_FH_JSI10i_1	132.32	108.29			1.0326	1.0322	33.2	16	10	Median	1.1245	0.94815	24.665	4	1	Median	0.79018	0.96092	37.515	3	3	Median	1.4396	1.3923	49.853	4	2	Linear	0.99852	1.0543	18.365	5	4	Median	2247200000	1072000000	1175200000	500920000	248040000	252880000	315740000	157030000	158710000	924700000	426570000	498140000	505860000	240380000	265470000	38561	1933	36280	236150;236151;236152;236153;236154;236155;236156;236157;236158;236159;236160;236161;236162;236163;236164;236165;236166;236167;236168;236169;236170;236171	317257;317258;317259;317260;317261;317262;317263;317264;317265;317266;317267;317268;317269;317270;317271;317272;317273;317274;317275;317276;317277;317278;317279;317280;317281	317267			25	
NIDEQPK	1	Unmodified	842.4134	0.41339662	5387	Q9UL18	AGO1	Protein argonaute-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.2203	4.8786	2	0.032748	2889	160511_QHF_FH_JSI12i_1	50.966	7.9657			0.82811	0.85906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82811	0.85906	NaN	1	0	Median	492950000	281400000	211550000	0	0	0	0	0	0	0	0	0	492950000	281400000	211550000	38562	5387	36281	236172	317282	317282			1	
NIDNPALADIYTEHAHQVVVAK	1	Unmodified	2417.2339	0.2339227	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.7		10	3						2	2	5	4	4	67.478	65.659	3;4	3.8307E-23	57950	160511_QHF_FH_JSI9i_2	161.8	148.48			0.89462	1.0082	44.708	14	8	Median	0.7536	0.63288	16.57	2	1	Median	0.77815	0.92382	58.203	5	4	Median	1.031	1.0756	46.982	3	2	Median	1.1204	1.1973	17.432	4	1	Median	4108400000	2062100000	2046300000	543880000	299730000	244150000	1272100000	720690000	551450000	1436600000	669230000	767330000	855830000	372420000	483400000	38563	472	36282	236173;236174;236175;236176;236177;236178;236179;236180;236181;236182;236183;236184;236185;236186;236187	317283;317284;317285;317286;317287;317288;317289;317290;317291;317292;317293;317294;317295;317296;317297;317298;317299;317300;317301;317302;317303;317304;317305;317306	317292			24	
NIDVWKK	2	Unmodified	901.50215	0.50215205	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		31.371	30.982	3	0.047361	26315	160511_QHF_FH_JSI11i_2	27.137	7.6601			3.315	3.3105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.315	3.3105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120190000	21448000	98743000	0	0	0	0	0	0	120190000	21448000	98743000	0	0	0	38564	2282	36283	236188	317307	317307			1	
NIEDVIAQGIGK	1	Unmodified	1255.6772	0.67721588	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.52	14	14	7			2	4	6		9	14	11	13	74.715	71.761	2;3	5.4522E-06	33813	160513_QHF_FH_JSI12Kac_5	107.06	78.851			0.77615	0.82852	182.77	34	34	Median	1.5623	1.3354	177.31	7	7	Median	0.36909	0.44232	169.65	8	8	Median	1.1174	1.1009	188.95	9	9	Median	0.37498	0.40732	213.46	10	10	Median	35914000000	18565000000	17349000000	6328600000	3112300000	3216300000	9708700000	5510400000	4198300000	11786000000	5184100000	6602000000	8090700000	4758500000	3332300000	38565	836	36284	236189;236190;236191;236192;236193;236194;236195;236196;236197;236198;236199;236200;236201;236202;236203;236204;236205;236206;236207;236208;236209;236210;236211;236212;236213;236214;236215;236216;236217;236218;236219;236220;236221;236222;236223;236224;236225;236226;236227;236228;236229;236230;236231;236232;236233;236234;236235	317308;317309;317310;317311;317312;317313;317314;317315;317316;317317;317318;317319;317320;317321;317322;317323;317324;317325;317326;317327;317328;317329;317330;317331;317332;317333;317334;317335;317336;317337;317338;317339;317340;317341;317342;317343;317344;317345;317346;317347;317348;317349;317350;317351;317352;317353;317354;317355;317356;317357;317358;317359;317360;317361;317362;317363;317364;317365;317366;317367;317368;317369;317370	317362			63	
NIEDYIHR	0	Unmodified	1058.5145	0.51450765	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	41.261	40.284	2;3	0.001672	34564	160511_QHF_FH_JSI11i_2	66.621	27.599			0.85799	0.80682	55.385	6	3	Median	1.2912	1.1044	59.764	2	1	Median	0.68372	0.83537	102.75	2	2	Median	0.85853	0.83505	NaN	1	0	Median	0.6941	0.77955	NaN	1	0	Median	432600000	248250000	184350000	87653000	44266000	43387000	127610000	86845000	40761000	148030000	80365000	67667000	69307000	36774000	32533000	38566	4449	36285	236236;236237;236238;236239;236240;236241	317371;317372;317373;317374;317375;317376	317374			6	
NIEEHASADVEK	1	Unmodified	1340.6208	0.62082322	1927	P61006	RAB8A	Ras-related protein Rab-8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	2.76	4	14					1			5	4	5	5	16.879	15.892	2;3	1.2923E-05	12922	160511_QHF_FH_JSI12i_2	117.79	93.017			1.6664	1.8642	106.96	17	17	Median	1.2785	1.1114	98.894	4	4	Median	0.68891	0.83663	94.805	4	4	Median	2.3238	2.3675	152.89	5	5	Median	1.8392	1.981	95.766	4	4	Median	1069000000	574520000	494490000	266430000	114770000	151650000	164100000	103880000	60214000	369560000	209160000	160400000	268920000	146700000	122220000	38567	1927	36286	236242;236243;236244;236245;236246;236247;236248;236249;236250;236251;236252;236253;236254;236255;236256;236257;236258;236259;236260	317377;317378;317379;317380;317381;317382;317383;317384;317385;317386;317387;317388;317389;317390;317391;317392;317393;317394;317395;317396	317380			20	
NIEEHASSDVER	0	Unmodified	1384.6219	0.62188585	3909	Q92930	RAB8B	Ras-related protein Rab-8B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	13.145	12.643	2	0.0023394	9870	160511_QHF_FH_JSI11i_2	59.542	33.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38568	3909	36287	236261;236262	317397;317398	317398			2	
NIEELQQQNQR	0	Unmodified	1398.6852	0.68515481	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.86	4	6					5			2	4	4	5	27.441	23.896	2	7.7398E-07	19895	160511_QHF_FH_JSI12i_2	119.68	93.007			0.63968	0.6494	107.05	6	6	Median	0.61894	0.51572	NaN	1	1	Median	0.54891	0.65221	NaN	1	1	Median	0.67847	0.6466	168.49	3	3	Median	0.66112	0.69216	NaN	1	1	Median	790030000	454840000	335190000	140140000	76992000	63150000	202530000	116190000	86344000	228130000	131290000	96833000	219230000	130360000	88867000	38569	1016	36288	236263;236264;236265;236266;236267;236268;236269;236270;236271;236272;236273;236274;236275;236276;236277	317399;317400;317401;317402;317403;317404;317405;317406;317407;317408;317409;317410;317411;317412;317413	317400			15	
NIEEVYVGGK	1	Unmodified	1106.5608	0.56078914	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		40.253	39.429	2	0.001945	33788	160511_QHF_FH_JSI11i_2	66.621	50.419			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38570	5536	36289	236278;236279;236280	317414;317415;317416	317415			3	
NIEGAVLIFLPGLAHIQQLYDLLSNDRR	0	Unmodified	3177.7299	0.72986716	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			100.38	94.66	4	2.6891E-28	55747	160513_QHF_FH_JSI10Kac_6	121.3	110.22			0.6501	0.75772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6501	0.75772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	175710000	113800000	61909000	0	0	0	175710000	113800000	61909000	0	0	0	0	0	0	38571	3267	36290	236281	317417;317418	317418			2	
NIEIDSPYEISR	0	Unmodified	1434.6991	0.69907354	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		60.433	59.651	2	0.00020784	52869	160511_QHF_FH_JSI10i_2	80.014	62.502			0.64925	0.5571	23.602	3	2	Median	0.6541	0.5571	NaN	1	1	Median	0.64925	0.80504	NaN	1	0	Median	0.52847	0.51851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	174630000	107650000	66982000	55236000	32534000	22701000	69501000	40834000	28667000	49898000	34284000	15613000	0	0	0	38572	816	36291	236282;236283;236284	317419;317420;317421	317421			3	
NIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYK	1	Unmodified	3983.9945	0.99453386	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	2				By MS/MS	3	0			2										2	100.67	100.69	4;5	2.1213E-26	87303	160511_QHF_FH_JSI12i_3	103.5	99.307			1.0259	1.1089	19.911	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0259	1.1089	19.911	2	0	Median	245060000	156790000	88269000	0	0	0	0	0	0	0	0	0	245060000	156790000	88269000	38573	816	36292	236285;236286	317422;317423	317422			2	
NIEKECNAK	2	Acetyl (K)	1146.5339	0.53392246	2689	Q15637	SF1	Splicing factor 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		18.726	11.31	2	0.059757	8078	160513_QHF_FH_JSI11Kac_3	49.418	27.911			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	867910	867910	0	0	0	0	0	0	0	867910	867910	0	0	0	0	38574	2689	36293	236287	317424	317424			1	
NIELAVMR	0	Unmodified	944.51134	0.51133653	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	5.93		4	3					2	1	3	2	4	1	56.584	52.754	2	0.0028908	46492	160511_QHF_FH_JSI9i_2	83.753	57.926			0.76227	0.75172	81.599	10	9	Median	0.605	0.52118	77.972	3	2	Median	2.3842	2.8132	26.085	2	2	Median	0.76227	0.75172	73.369	4	4	Median	0.44188	0.48984	NaN	1	1	Median	1580500000	715900000	864630000	324110000	132140000	191970000	332060000	125730000	206330000	521880000	251550000	270330000	402480000	206470000	196000000	38575	209	36294	236288;236289;236290;236291;236292;236293;236294;236295;236296;236297	317425;317426;317427;317428;317429;317430;317431;317432;317433;317434	317431			10	
NIELAVMR	0	Oxidation (M)	960.50625	0.50625115	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	47.997	37.665	2	0.018737	19714	160513_QHF_FH_JSI12Kac_5	69.998	36.448			0.36736	0.39065	10.817	4	4	Median	0.52439	0.43899	NaN	1	1	Median	0.31896	0.37546	NaN	1	1	Median	0.42311	0.40644	NaN	1	1	Median	0.31143	0.34105	NaN	1	1	Median	20776000	11624000	9152100	4441600	2251200	2190400	4215200	2520600	1694600	6392300	3174200	3218100	5727300	3678300	2049000	38576	209	36294	236298;236299;236300;236301	317435;317436;317437;317438	317437		86	4	
NIELICQENEGENDPVLQR	0	Unmodified	2269.0645	0.06447411	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		67.474	67.05	3	0.0095526	60961	160511_QHF_FH_JSI11i_1	37.552	28.951			0.39954	0.39278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39954	0.39278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44525000	31531000	12994000	0	0	0	0	0	0	44525000	31531000	12994000	0	0	0	38577	2698	36295	236302	317439	317439			1	
NIEMTQEDVR	0	Unmodified	1233.566	0.56595087	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	30.108	29.619	2	5.2861E-06	26574	160511_QHF_FH_JSI12i_1	117.7	99.834			0.42828	0.47906	113.91	6	6	Median	0.36817	0.30172	NaN	1	1	Median	1.0067	1.1841	131.13	2	2	Median	1.2869	1.272	168.81	2	2	Median	0.46514	0.48986	NaN	1	1	Median	910600000	524370000	386240000	123450000	85420000	38028000	313040000	197010000	116040000	247890000	110470000	137420000	226220000	131470000	94748000	38578	552	36296	236303;236304;236305;236306;236307;236308	317440;317441;317442;317443;317444;317445	317442			6	
NIENSDK	1	Unmodified	818.37701	0.37701112	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	4.9132	4.5742	2	0.022022	2403	160511_QHF_FH_JSI11i_1	56.27	22.457			1.0687	0.89371	54.014	3	1	Median	1.0687	0.89371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78819	0.768	NaN	1	0	Median	1.9671	2.092	NaN	1	1	Median	788270000	381680000	406580000	145850000	77294000	68554000	0	0	0	353660000	176160000	177500000	288760000	128230000	160530000	38579	731	36297	236309;236310;236311	317446;317447	317446			2	
NIEVMNSFELLSHTVEEK	1	Unmodified	2118.0303	0.030320436	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	3	1	97.574	97.364	2;3	2.9562E-23	85452	160511_QHF_FH_JSI11i_2	130.24	110.13			3.489	3.7274	34.144	4	4	Median	6.4517	5.5897	NaN	1	1	Median	2.3811	2.9288	NaN	1	1	Median	2.8254	2.8411	NaN	1	1	Median	4.3086	4.7438	NaN	1	1	Median	311250000	101900000	209360000	42744000	6037900	36706000	61868000	24678000	37190000	131420000	54900000	76521000	75222000	16280000	58942000	38580	3232	36298	236312;236313;236314;236315;236316;236317	317448;317449;317450;317451;317452;317453;317454;317455	317453			8	
NIEVPETK	1	Unmodified	928.48656	0.48656157	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		35.027	33.783	2	0.013874	30007	160511_QHF_FH_JSI11i_1	50.966	3.8989			0.44027	0.36338	NaN	1	1	Median	0.44027	0.36338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99650000	60365000	39284000	99650000	60365000	39284000	0	0	0	0	0	0	0	0	0	38581	3821	36299	236318;236319	317456;317457	317456			2	
NIEVPFKPAR	1	Unmodified	1169.6557	0.65569258	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							1	2	2	1	45.491	44.939	3	0.022476	37745	160511_QHF_FH_JSI10i_3	32.606	22.554			0.94448	1.0031	19.526	5	0	Median	1.1599	1.0195	NaN	1	0	Median	0.8078	1.0031	NaN	1	0	Median	0.9787	0.96491	10.993	2	0	Median	0.65218	0.65199	NaN	1	0	Median	816830000	461630000	355200000	130300000	56513000	73791000	177270000	103950000	73321000	350650000	197280000	153360000	158600000	103880000	54724000	38582	1194	36300	236320;236321;236322;236323;236324;236325	317458;317459;317460;317461;317462;317463	317460			6	
NIFAILQSVK	1	Unmodified	1131.6652	0.66519463	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.88		6	2						8	4	4	5	3	96.619	92.405	2	5.0382E-06	87099	160511_QHF_FH_JSI12i_2	117.84	55.015			0.030305	0.028477	338.9	7	7	Median	0.53221	0.45787	406.09	2	2	Median	0.024521	0.028477	NaN	1	1	Median	0.88987	0.83552	479.33	2	2	Median	0.30976	0.33379	463.71	2	2	Median	694750000	341530000	353220000	160420000	51675000	108750000	176390000	107940000	68452000	250310000	98022000	152280000	107640000	83901000	23735000	38583	3090	36301	236326;236327;236328;236329;236330;236331;236332;236333;236334;236335;236336;236337;236338;236339;236340;236341	317464;317465;317466;317467;317468;317469;317470;317471;317472;317473;317474;317475;317476;317477;317478;317479	317465			16	
NIFLLFK	1	Unmodified	893.53747	0.53747492	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.43		7	8						8	6	6	6	5	94.737	91.745	2	0.012139	45051	160513_QHF_FH_JSI11Kac_6	86.086	43.086			0.026405	0.026673	364.43	6	6	Median	0.019677	0.016736	NaN	1	1	Median	0.37516	0.44629	354.12	3	3	Plateau	0.0091238	0.0085783	NaN	1	1	Median	0.0087932	0.0092752	NaN	1	1	Median	3256800000	1682800000	1574100000	865680000	428110000	437560000	904310000	557610000	346700000	931920000	434320000	497590000	554940000	262740000	292190000	38584	1857	36302	236342;236343;236344;236345;236346;236347;236348;236349;236350;236351;236352;236353;236354;236355;236356;236357;236358;236359;236360;236361;236362;236363;236364	317480;317481;317482;317483;317484;317485;317486;317487;317488;317489;317490;317491;317492;317493;317494;317495;317496;317497;317498;317499;317500;317501;317502;317503;317504;317505;317506;317507;317508;317509;317510;317511;317512	317488			33	
NIFLLFKK	2	Acetyl (K)	1063.643	0.64300263	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.631	83.304	2	0.0057003	46363	160513_QHF_FH_JSI9Kac_6	87.323	73.165			1.3486	1.2942	259.57	4	4	Median	6.0681	5.1731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2322	1.2154	404.59	2	2	Median	0.29973	0.32378	NaN	1	1	Median	215890000	111380000	104510000	38499000	19460000	19039000	47480000	27318000	20163000	75582000	40416000	35165000	54329000	24188000	30141000	38585	1857	36303	236365;236366;236367;236368;236369;236370;236371;236372	317513;317514;317515;317516;317517;317518;317519;317520	317516	1872		8	
NIFLQYASTEVDGER	0	Unmodified	1740.8319	0.83187862	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	78.347	77.146	2	0.0001141	66618	160511_QHF_FH_JSI12i_2	134.08	116.71			0.51112	0.53476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51112	0.53476	NaN	1	1	Median	16915000	13227000	3687700	0	0	0	0	0	0	0	0	0	16915000	13227000	3687700	38586	562	36304	236373;236374;236375;236376	317521;317522;317523;317524	317521			4	
NIFLVAATLRPETMFGQTNCWVRPDMK	1	Unmodified	3194.5828	0.58275069	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2		By MS/MS			16	0									2		2			94.271	88.55	4	0.00041022	50981	160513_QHF_FH_JSI10Kac_6	74.274	60.378			2.0507	2.4304	203.77	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0507	2.4304	203.77	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	231820000	131140000	100680000	0	0	0	231820000	131140000	100680000	0	0	0	0	0	0	38587	5215	36305	236377;236378	317525;317526	317526			2	
NIFNKTHR	1	Acetyl (K)	1070.5621	0.56212655	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			32.663	24.351	3	0.016569	13841	160513_QHF_FH_JSI10Kac_6	44.203	29.996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38588	1966	36306	236379	317527	317527	1986		1	
NIFPIWALGR	0	Unmodified	1185.6659	0.66586334	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	100.44	100.45	2	0.00017432	83431	160511_QHF_FH_JSI10i_3	94.302	62.368			0.93819	0.92629	29.568	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1811	1.1417	NaN	1	0	Median	0.74522	0.75153	NaN	1	0	Median	35140000	19095000	16045000	0	0	0	0	0	0	8832400	4167900	4664500	26307000	14927000	11380000	38589	1621	36307	236380;236381;236382	317528;317529;317530	317529			3	
NIFPSNLVSAAFR	0	Unmodified	1434.7619	0.76194857	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	96.243	95.972	2	3.1563E-06	84316	160511_QHF_FH_JSI11i_2	126.67	88.378			1.0542	1.0676	16.512	7	0	Median	1.3056	1.1048	29.45	2	0	Median	0.85402	1.0676	NaN	1	0	Median	1.0939	1.0653	0.77065	2	0	Median	0.96216	1.0236	26.639	2	0	Median	603350000	329970000	273390000	115230000	64343000	50888000	103980000	65500000	38485000	192050000	111030000	81023000	192080000	89092000	102990000	38590	2705	36308	236383;236384;236385;236386;236387;236388;236389	317531;317532;317533;317534;317535;317536;317537;317538;317539	317537			9	
NIFPYHEVTVK	1	Unmodified	1345.703	0.7030367	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		52.397	51.611	3	0.020289	45169	160511_QHF_FH_JSI9i_2	35.774	28.05			1.6069	1.4996	145.65	2	2	Median	4.9073	4.2	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52618	0.53542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105520000	55492000	50025000	20498000	4555900	15942000	0	0	0	85019000	50937000	34083000	0	0	0	38591	1435	36309	236390;236391	317540;317541	317540			2	
NIFSVPEIVR	0	Unmodified	1172.6554	0.65535823	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	81.866	81.048	2	0.00076069	71541	160511_QHF_FH_JSI9i_2	83.948	34.53			0.47237	0.5885	18.708	3	3	Plateau	0.67133	0.5885	NaN	1	1	Median	0.3748	0.46417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59534	0.67143	NaN	1	1	Median	77513000	42648000	34865000	18347000	8734800	9612300	29483000	17924000	11558000	0	0	0	29683000	15989000	13694000	38592	433	36310	236392;236393;236394	317542;317543;317544	317543			3	
NIFVLQQNLTNITMSR	0	Unmodified	1890.9986	0.9985668	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		100.13	100.02	2	2.7815E-07	88008	160511_QHF_FH_JSI11i_2	182.08	151.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16114000	10499000	5614500	5614500	0	5614500	0	0	0	10499000	10499000	0	0	0	0	38593	3962	36311	236395;236396	317545;317546	317546			2	
NIGENEGGIDK	1	Unmodified	1144.536	0.53603095	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	19.586	19	2	6.0955E-06	16237	160511_QHF_FH_JSI11i_1	114.4	88.017			0.9426	0.78709	41.312	3	2	Plateau	0.94137	0.78709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5462	1.5229	NaN	1	1	Median	1.6017	1.6838	NaN	1	1	Median	541240000	269170000	272070000	207310000	104130000	103170000	0	0	0	175490000	86733000	88760000	158450000	78308000	80138000	38594	2216	36312	236397;236398;236399	317547;317548;317549;317550	317547			4	
NIGGQIQEK	1	Unmodified	985.51926	0.51925868	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		16.638	16.244	2	0.014914	13662	160511_QHF_FH_JSI10i_1	54.982	37.596			9.4362	9.9798	53.604	3	3	Plateau	4.4919	3.9094	NaN	1	1	Median	8.3494	9.8046	NaN	1	1	Median	10.259	9.9798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132280000	20432000	111850000	15116000	4413700	10702000	58277000	9550100	48727000	58889000	6467800	52422000	0	0	0	38595	4704	36313	236400;236401;236402	317551;317552;317553	317552			3	
NIGISAHIDSGK	1	Unmodified	1210.6306	0.63060004	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	33.07	32.671	2	4.425E-05	28876	160511_QHF_FH_JSI10i_2	87.184	60.8			2.6233	2.6574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6233	2.6574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19081000	7073200	12007000	0	0	0	0	0	0	19081000	7073200	12007000	0	0	0	38596	4221	36314	236403;236404;236405;236406	317554;317555;317556;317557	317557			4	
NIGLGFK	1	Unmodified	747.42792	0.42792448	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.74	2.72	5	8	9					1		6	6	5	6	45.685	44.831	1;2	0.020944	38173	160511_QHF_FH_JSI12i_3	60.358	8.7859			1.7719	1.7078	101.39	22	22	Median	1.6592	1.3607	96.966	5	5	Median	0.89876	1.0487	105.32	6	6	Median	2.2839	2.1882	108.71	5	5	Median	0.88545	0.92254	121.72	6	6	Median	20895000000	10507000000	10388000000	3851900000	1680100000	2171800000	5585200000	2984000000	2601300000	6825600000	3209200000	3616500000	4632200000	2634100000	1998100000	38597	1996	36315	236407;236408;236409;236410;236411;236412;236413;236414;236415;236416;236417;236418;236419;236420;236421;236422;236423;236424;236425;236426;236427;236428;236429	317558;317559;317560;317561;317562;317563;317564;317565;317566;317567;317568;317569;317570;317571;317572;317573;317574;317575;317576;317577;317578;317579;317580;317581;317582;317583;317584;317585	317584			28	
NIGLGFKTPK	2	Acetyl (K)	1115.6339	0.63389451	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	1.03						2	3	5	6	3	5	3	5	68.193	58.339	2	3.3816E-05	29244	160513_QHF_FH_JSI10Kac_5	104.42	75.275			0.82069	0.90287	73.28	11	0	Median	1.249	1.0546	NaN	1	0	Median	1.0079	1.1829	130.96	3	0	Median	0.76557	0.73733	22.122	3	0	Plateau	0.78856	0.85557	38.68	4	0	Median	630570000	326090000	304480000	91353000	40587000	50766000	172140000	106310000	65837000	164760000	80452000	84304000	202320000	98742000	103580000	38598	1996	36316	236430;236431;236432;236433;236434;236435;236436;236437;236438;236439;236440;236441;236442;236443;236444;236445	317586;317587;317588;317589;317590;317591;317592;317593;317594;317595;317596;317597;317598;317599;317600;317601;317602;317603;317604;317605;317606;317607;317608	317602	2027		23	
NIGLTELVQIIINTTHLEK	1	Unmodified	2148.2154	0.21541909	5513	Q9Y2D4	EXOC6B	Exocyst complex component 6B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		1	1	2	102.05	98.259	3	3.5581E-35	55460	160513_QHF_FH_JSI10Kac_6	174.04	165.65			1.0276	1.0986	16.14	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0977	1.2674	NaN	1	0	Median	0.91924	0.88292	NaN	1	0	Median	1.0321	1.0986	10.665	2	2	Median	170680000	84661000	86023000	0	0	0	115380000	54482000	60896000	7700300	4012900	3687400	47605000	26167000	21439000	38599	5513	36317	236446;236447;236448;236449	317609;317610;317611;317612	317612			4	
NIGNTFFK	1	Unmodified	939.48142	0.48141661	2276	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.556	48.158	2	0.044706	41216	160511_QHF_FH_JSI12i_2	47.082	24.459			2.4717	2.6679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4717	2.6679	NaN	1	1	Median	81369000	30606000	50763000	0	0	0	0	0	0	0	0	0	81369000	30606000	50763000	38600	2276	36318	236450	317613	317613			1	
NIGPLVK	1	Unmodified	739.45922	0.4592246	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	33.794	32.929	2	0.047323	28069	160511_QHF_FH_JSI12i_2	48.174	31.247			9.6302	10.256	49.408	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.269	7.2319	NaN	1	1	Median	12.758	14.545	NaN	1	1	Median	140230000	18221000	122010000	0	0	0	0	0	0	87140000	13122000	74018000	53088000	5099400	47989000	38601	1306	36319	236451;236452	317614;317615	317614			2	
NIGRDTPTSAGPNSFNK	1	Unmodified	1774.8598	0.85982471	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			30.219	29.113	3	0.00039217	25240	160511_QHF_FH_JSI9i_2	69.081	56.699			1.8936	2.1758	3.8482	3	3	Median	2.4084	2.056	NaN	1	1	Median	1.8227	2.1942	1.1893	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82505000	22259000	60247000	24785000	5770100	19015000	57721000	16489000	41232000	0	0	0	0	0	0	38602	3793	36320	236453;236454;236455	317616;317617;317618	317617			3	
NIGRDTPTSAGPNSFNKGK	2	Acetyl (K)	2001.9868	0.98681614	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			43.189	34.571	3	0.051412	19201	160513_QHF_FH_JSI10Kac_6	47.082	36.423			6.9367	8.305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.9367	8.305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3185200	60250	3124900	0	0	0	3185200	60250	3124900	0	0	0	0	0	0	38603	3793	36321	236456	317619	317619	2938;2939		1	
NIGVDNPAAK	1	Unmodified	997.51926	0.51925868	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.66	7	3	2			3	3			4	5	5	4	27.192	23.721	2	2.0544E-05	21023	160511_QHF_FH_JSI10i_1	109.11	71.551			1.1017	1.1363	69.697	18	13	Median	1.6122	1.3634	68.373	4	4	Median	0.87406	1.0399	62.939	5	3	Median	1.2311	1.2184	85.737	5	4	Median	0.9886	1.0896	85.498	4	2	Median	8005600000	4433400000	3572200000	2218500000	923210000	1295300000	2164500000	1400700000	763770000	2286100000	1382000000	904040000	1336600000	727460000	609110000	38604	2090	36322	236457;236458;236459;236460;236461;236462;236463;236464;236465;236466;236467;236468;236469;236470;236471;236472;236473;236474	317620;317621;317622;317623;317624;317625;317626;317627;317628;317629;317630;317631;317632;317633;317634;317635;317636;317637;317638;317639;317640;317641;317642;317643;317644;317645	317630			26	
NIGWGTDQGIGGFGEEPGIK	1	Unmodified	2030.9698	0.96976909	5682	Q9Y5U9	IER3IP1	Immediate early response 3-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	81.131	80.537	2	1.2774E-24	70924	160511_QHF_FH_JSI9i_2	171.46	163.36			0.92604	0.97173	20.112	7	0	Median	0.92604	0.81154	NaN	1	0	Median	0.7495	0.89136	18.771	2	0	Median	1.1759	1.1486	16.548	2	0	Median	0.78212	0.83533	21.389	2	0	Median	264690000	130780000	133910000	33375000	16748000	16627000	70546000	39217000	31329000	106730000	46928000	59798000	54045000	27887000	26158000	38605	5682	36323	236475;236476;236477;236478;236479;236480;236481	317646;317647;317648;317649;317650;317651;317652;317653;317654;317655;317656;317657;317658	317654			13	
NIHESCMSQIGWNR	0	Unmodified	1730.7617	0.76170734	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							1	4	3	4	42.701	42.314	2;3	3.3965E-07	37409	160511_QHF_FH_JSI10i_2	89.805	83.572			0.79842	0.9001	91.451	8	8	Median	2.2737	2.0097	NaN	1	1	Median	0.7075	0.87927	40.005	2	2	Median	0.92943	0.87698	141.44	2	2	Median	0.67659	0.6944	125	3	3	Median	696950000	294870000	402080000	30956000	7991200	22965000	182240000	104410000	77832000	216280000	92574000	123700000	267470000	89898000	177580000	38606	1000	36324	236482;236483;236484;236485;236486;236487;236488;236489;236490;236491;236492;236493	317659;317660;317661;317662;317663;317664;317665;317666;317667;317668;317669;317670;317671;317672	317667			14	
NIHIFVSR	0	Unmodified	984.5505	0.55049923	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	48.347	39.031	2;3	0.0060169	21587	160513_QHF_FH_JSI10Kac_6	52.579	27.803			0.12141	0.12257	224.64	7	7	Median	0.12141	0.098945	NaN	1	1	Median	0.61147	0.7301	359.52	2	2	Median	0.65318	0.63393	242.63	2	2	Median	0.82306	0.88991	280.36	2	2	Median	122680000	74376000	48302000	15898000	13217000	2681400	75438000	43094000	32345000	20023000	11106000	8917400	11318000	6960500	4358000	38607	2793	36325	236494;236495;236496;236497;236498;236499;236500;236501	317673;317674;317675;317676;317677;317678;317679;317680	317680			8	
NIHPWVK	1	Unmodified	892.49192	0.49192172	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	3.73		15	8						2	7	4	6	8	28.03	26.426	2;3	0.0050649	21935	160511_QHF_FH_JSI11i_2	58.981	36.34			3.2092	3.5189	167.32	23	20	Median	4.0937	3.5189	164.73	7	6	Median	0.28324	0.33285	128.99	4	4	Median	4.1654	4.1919	217.79	5	4	Median	3.2265	3.6476	161.45	7	6	Median	2819800000	1214000000	1605800000	550770000	233140000	317640000	701520000	401000000	300520000	1005000000	344900000	660110000	562500000	234940000	327560000	38608	1372	36326	236502;236503;236504;236505;236506;236507;236508;236509;236510;236511;236512;236513;236514;236515;236516;236517;236518;236519;236520;236521;236522;236523;236524;236525;236526	317681;317682;317683;317684;317685;317686;317687;317688;317689;317690;317691;317692;317693;317694;317695;317696;317697;317698;317699;317700;317701;317702;317703;317704;317705;317706;317707	317701			27	
NIHSSDWPK	1	Unmodified	1082.5145	0.51450765	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2	0		4								1	1		2	20.944	19.919	2;3	0.0024328	16799	160511_QHF_FH_JSI12i_2	64.711	64.711			1.6956	1.6442	66.718	4	1	Median	1.9917	1.6929	NaN	1	0	Median	4.5589	5.709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3234	1.4528	13.367	2	0	Median	300170000	116420000	183750000	51902000	21689000	30213000	107200000	30435000	76767000	0	0	0	141070000	64292000	76774000	38609	5486	36327	236527;236528;236529;236530	317708;317709;317710	317709			3	
NIHSSDWPKFFEK	2	Acetyl (K)	1675.7995	0.79945628	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.227	66.902	3	0.042397	36427	160513_QHF_FH_JSI11Kac_6	36.022	24.751			0.53387	0.52557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53387	0.52557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25457000	19590000	5867000	0	0	0	0	0	0	25457000	19590000	5867000	0	0	0	38610	5486	36328	236531	317711	317711			1	
NIHYYFMALK	1	Unmodified	1298.6482	0.64816436	4553	Q9BYW2	SETD2	Histone-lysine N-methyltransferase SETD2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	74.289	65.275	3	0.00011026	34291	160513_QHF_FH_JSI12Kac_6	90.108	66.882			0.60408	0.57614	161.21	2	2	Median	2.1439	1.8013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17021	0.18427	NaN	1	1	Median	25442000	13913000	11529000	16881000	6252800	10628000	0	0	0	0	0	0	8561500	7660000	901460	38611	4553	36329	236532;236533	317712;317713	317713			2	
NIIFFGK	1	Unmodified	837.47487	0.47487467	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.8		7	7				1		4	5	5	4	5	68.884	65.843	2	0.011657	57026	160511_QHF_FH_JSI12i_2	76.847	68.074			0.77412	0.92641	83.149	19	15	Median	1.1964	1.0183	93.918	5	4	Median	0.77412	0.92641	79.332	5	4	Median	0.56903	0.54293	96.878	4	3	Median	0.9722	1.0446	91.956	5	4	Median	7866900000	3908800000	3958200000	1765600000	844950000	920670000	2222300000	1068900000	1153300000	2828700000	1436500000	1392200000	1050300000	558330000	491980000	38612	1464	36330	236534;236535;236536;236537;236538;236539;236540;236541;236542;236543;236544;236545;236546;236547;236548;236549;236550;236551;236552	317714;317715;317716;317717;317718;317719;317720;317721;317722;317723;317724;317725;317726;317727;317728;317729;317730;317731;317732;317733;317734;317735;317736;317737;317738	317715			25	
NIIGSSPVADFSAIK	1	Unmodified	1517.809	0.80895834	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		4								2		1	1	80.365	79.539	2	0.00089013	70045	160511_QHF_FH_JSI9i_2	64.65	21.138			0.72797	1.0038	28.539	3	0	Plateau	0.72797	0.60265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0121	1.0078	NaN	1	0	Median	0.5859	0.62876	NaN	1	0	Median	85924000	53241000	32682000	25605000	14909000	10696000	0	0	0	33555000	21205000	12350000	26764000	17127000	9637000	38613	1537	36331	236553;236554;236555;236556	317739;317740	317740			2	
NIIGVIPYFPYSK	1	Unmodified	1509.8232	0.82315184	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		4							5	2	3	3	1	94.24	89.868	2	5.5561E-06	45057	160513_QHF_FH_JSI9Kac_6	110.86	74.913			0.99258	0.98039	28.42	9	5	Median	1.3878	1.2118	29.971	2	1	Median	0.68426	0.80333	44.656	3	2	Median	0.99258	0.99589	19.125	3	2	Median	0.82537	0.90992	NaN	1	0	Median	381080000	176960000	204120000	68037000	22678000	45359000	111570000	58005000	53562000	142230000	68098000	74136000	59239000	28174000	31065000	38614	2543	36332	236557;236558;236559;236560;236561;236562;236563;236564;236565	317741;317742;317743;317744;317745;317746;317747;317748;317749;317750;317751;317752;317753	317751			13	
NIIHGSDSVESAEK	1	Unmodified	1484.7107	0.71070086	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.73	12	16	14			1	4	5	5	12	14	16	15	23.849	21.136	2;3	7.7954E-07	17729	160511_QHF_FH_JSI11i_2	120.92	103.12			0.53672	0.57177	148.81	54	54	Median	1.852	1.4727	148.26	11	11	Median	1.0169	1.1915	121.35	14	14	Median	0.41314	0.40428	156.57	14	14	Median	0.45618	0.52641	174.83	15	15	Median	30210000000	13551000000	16659000000	5699000000	2351300000	3347700000	7716200000	3915000000	3801200000	11091000000	4359100000	6732100000	5703400000	2925500000	2777800000	38615	1079	36333	236566;236567;236568;236569;236570;236571;236572;236573;236574;236575;236576;236577;236578;236579;236580;236581;236582;236583;236584;236585;236586;236587;236588;236589;236590;236591;236592;236593;236594;236595;236596;236597;236598;236599;236600;236601;236602;236603;236604;236605;236606;236607;236608;236609;236610;236611;236612;236613;236614;236615;236616;236617;236618;236619;236620;236621;236622	317754;317755;317756;317757;317758;317759;317760;317761;317762;317763;317764;317765;317766;317767;317768;317769;317770;317771;317772;317773;317774;317775;317776;317777;317778;317779;317780;317781;317782;317783;317784;317785;317786;317787;317788;317789;317790;317791;317792;317793;317794;317795;317796;317797;317798;317799;317800;317801;317802;317803;317804;317805;317806;317807;317808;317809;317810;317811;317812;317813;317814;317815;317816;317817;317818;317819;317820;317821;317822;317823;317824;317825	317806			72	
NIIHGSDSVK	1	Unmodified	1068.5564	0.55637247	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.31	6.52	3	15	12				4	16	15	15	17	16	17	16.506	11.77	2;3	2.4019E-05	10221	160511_QHF_FH_JSI12i_2	107.15	79.9			2.4064	2.4868	187.3	62	61	Median	0.31349	0.26554	190.24	15	15	Median	2.5747	3.026	184.22	16	16	Median	2.2777	2.155	182.78	15	14	Median	2.0864	2.0796	205.83	16	16	Median	26010000000	13617000000	12393000000	3939000000	2395900000	1543100000	5876100000	2844800000	3031300000	11256000000	6082100000	5173500000	4939300000	2293900000	2645400000	38616	1209	36334	236623;236624;236625;236626;236627;236628;236629;236630;236631;236632;236633;236634;236635;236636;236637;236638;236639;236640;236641;236642;236643;236644;236645;236646;236647;236648;236649;236650;236651;236652;236653;236654;236655;236656;236657;236658;236659;236660;236661;236662;236663;236664;236665;236666;236667;236668;236669;236670;236671;236672;236673;236674;236675;236676;236677;236678;236679;236680;236681;236682;236683;236684;236685;236686;236687	317826;317827;317828;317829;317830;317831;317832;317833;317834;317835;317836;317837;317838;317839;317840;317841;317842;317843;317844;317845;317846;317847;317848;317849;317850;317851;317852;317853;317854;317855;317856;317857;317858;317859;317860;317861;317862;317863;317864;317865;317866;317867;317868;317869;317870;317871;317872;317873;317874;317875;317876;317877;317878;317879;317880;317881;317882;317883;317884;317885;317886;317887;317888;317889;317890;317891;317892;317893;317894;317895;317896;317897;317898;317899	317832			74	
NIIHGSDSVKSAEK	2	Acetyl (K)	1525.7736	0.77363546	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.498							6	5		1	4	2	4	34.292	24.928	2;3	0.00044728	14869	160513_QHF_FH_JSI10Kac_4	83.633	70.838			4.4012	4.933	296.69	4	4	Median	NaN	NaN	NaN	0	0	Median	0.47364	0.56294	311.09	2	2	Median	81.789	82.172	NaN	1	1	Median	4.4634	4.791	NaN	1	1	Median	41472000	15438000	26034000	1935200	0	1935200	17392000	10018000	7374000	10170000	58789	10111000	11975000	5360600	6614200	38617	1209	36335	236688;236689;236690;236691;236692;236693;236694;236695;236696;236697;236698	317900;317901;317902;317903;317904;317905;317906;317907;317908;317909;317910	317903	1087		11	
NIIIALIDR	0	Unmodified	1039.639	0.63897988	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.62		3	1						7	2	3	3	3	87.039	81.704	2	1.2292E-05	42784	160513_QHF_FH_JSI11Kac_6	108.98	73.097			0.26261	0.28292	95.585	11	11	Median	0.72823	0.61544	151.67	2	2	Median	0.23274	0.27836	145.4	3	3	Median	0.35022	0.33061	75.46	3	3	Median	0.26261	0.24118	18.923	3	3	Plateau	2211500000	1284100000	927470000	380650000	196220000	184430000	1183900000	676600000	507290000	385970000	226220000	159750000	261030000	185030000	76004000	38618	4212	36336	236699;236700;236701;236702;236703;236704;236705;236706;236707;236708;236709	317911;317912;317913;317914;317915;317916;317917;317918;317919;317920;317921	317913			11	
NIILEEGK	1	Unmodified	914.5073	0.50729701	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.77	5.91	8	5	4		4	5	6	3		6	10	9	10	38.691	33.677	2	0.00041541	28366	160511_QHF_FH_JSI12i_2	109.01	22.219			1.5743	1.7048	113.56	32	23	Median	2.8017	2.3243	125.7	6	5	Median	1.7489	2.096	119.98	9	7	Median	1.5923	1.545	105.45	8	5	Median	1.0849	1.1489	115.11	9	6	Median	40245000000	18795000000	21449000000	6813900000	2396600000	4417400000	11591000000	5926300000	5664400000	11884000000	5121100000	6762700000	9956300000	5351500000	4604800000	38619	1236	36337	236710;236711;236712;236713;236714;236715;236716;236717;236718;236719;236720;236721;236722;236723;236724;236725;236726;236727;236728;236729;236730;236731;236732;236733;236734;236735;236736;236737;236738;236739;236740;236741;236742;236743;236744	317922;317923;317924;317925;317926;317927;317928;317929;317930;317931;317932;317933;317934;317935;317936;317937;317938;317939;317940;317941;317942;317943;317944;317945;317946;317947;317948;317949;317950;317951;317952;317953;317954;317955;317956;317957;317958;317959;317960;317961;317962;317963;317964;317965	317926			44	
NIILGGVK	1	Unmodified	812.51199	0.51198846	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.75	4	7	4					4	1	4	3	6	7	45.011	41.873	2	0.0075435	36551	160511_QHF_FH_JSI9i_2	68.915	27.413			0.5233	0.6096	98.348	20	19	Median	1.0465	0.8599	95.229	4	4	Median	0.28663	0.34458	37.389	3	3	Plateau	1.0409	1.0208	117.19	6	6	Median	1.2441	1.3752	108.09	7	6	Median	7068100000	3760100000	3307900000	1377700000	691860000	685810000	865880000	578210000	287660000	2873100000	1445400000	1427600000	1951400000	1044600000	906830000	38620	1208	36338	236745;236746;236747;236748;236749;236750;236751;236752;236753;236754;236755;236756;236757;236758;236759;236760;236761;236762;236763;236764	317966;317967;317968;317969;317970;317971;317972;317973;317974;317975;317976;317977;317978;317979;317980;317981;317982;317983;317984;317985;317986;317987	317978			22	
NIILMSLLHLGALYGITLIPTCK	1	Unmodified	2553.4427	0.44265861	166	O00767	SCD	Acyl-CoA desaturase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.17	96.45	3	1.6433E-14	57067	160513_QHF_FH_JSI10Kac_6	167.72	146.35			0.71515	0.8303	229.22	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71515	0.8303	229.22	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117700000	62563000	55134000	0	0	0	117700000	62563000	55134000	0	0	0	0	0	0	38621	166	36339	236765;236766	317988;317989	317989			2	
NIINEEDADTMR	0	Unmodified	1419.63	0.63000769	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		38.158	37.564	2	0.00053195	33781	160511_QHF_FH_JSI11i_1	84.658	67.222			1.1511	1.1172	93.907	3	3	Median	0.31792	0.26472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3625	1.3139	22.936	2	2	Median	NaN	NaN	NaN	0	0	Median	95443000	56463000	38980000	22884000	18107000	4777000	0	0	0	72559000	38356000	34203000	0	0	0	38622	4253	36340	236767;236768;236769	317990;317991;317992;317993	317991			4	
NIIQLIINAYNSIR	0	Unmodified	1643.9359	0.93589019	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	4	3	2	100.49	92.504	2;3	5.1538E-44	52700	160513_QHF_FH_JSI9Kac_6	221.6	165.03			0.058415	0.059168	332.55	8	8	Median	0.052099	0.044989	47.566	2	2	Median	0.81645	0.96981	413.66	4	4	Median	0.058415	0.056086	8.2044	2	2	Median	NaN	NaN	NaN	0	0	Median	4284100000	2258500000	2025600000	685940000	218670000	467270000	2741500000	1538800000	1202700000	856670000	501080000	355590000	0	0	0	38623	1136	36341	236770;236771;236772;236773;236774;236775;236776;236777;236778;236779;236780;236781;236782	317994;317995;317996;317997;317998;317999;318000;318001;318002;318003;318004;318005;318006	317997			13	
NIIQQAIDAGEVPSYNAFVK	1	Unmodified	2176.1164	0.11643333	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								3	4	2	3	99.454	99.307	2;3	1.4034E-16	87146	160511_QHF_FH_JSI11i_2	117.92	107.59			0.85993	0.90926	80.137	8	6	Median	0.92	0.79362	123.43	2	2	Median	0.84708	1.0401	101.77	2	2	Median	0.8708	0.8718	NaN	1	0	Median	0.8492	0.94832	88.928	3	2	Median	304310000	150440000	153870000	61225000	34809000	26416000	73318000	41044000	32273000	73484000	31801000	41683000	96282000	42782000	53500000	38624	3814	36342	236783;236784;236785;236786;236787;236788;236789;236790;236791;236792;236793;236794	318007;318008;318009;318010;318011;318012;318013;318014;318015;318016;318017;318018;318019;318020	318015			14	
NIISLLNVFTPQK	1	Unmodified	1485.8555	0.8555146	1574	P45984;P53779	MAPK9;MAPK10	Mitogen-activated protein kinase 9;Mitogen-activated protein kinase 10	yes	no	0	0	0	0	By MS/MS	By matching	By matching		3	0			3							1	1	1		102.1	101.99	2	4.944E-05	82849	160511_QHF_FH_JSI9i_3	111.86	89.862			1.1239	0.91079	30	3	0	Median	1.1239	0.91079	NaN	1	0	Median	0.7586	0.89153	NaN	1	0	Median	1.605	1.5146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	146310000	79094000	67213000	25776000	8812900	16963000	44718000	25851000	18867000	75813000	44431000	31382000	0	0	0	38625	1574	36343	236795;236796;236797	318021	318021			1	
NIISPPWDFREFEVEK	1	Unmodified	2004.9945	0.99452728	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		96.179	96.179	3	0.040689	85719	160511_QHF_FH_JSI11i_3	34.094	18.84			5.7085	5.5311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7085	5.5311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63993000	14292000	49702000	0	0	0	0	0	0	63993000	14292000	49702000	0	0	0	38626	2343	36344	236798	318022	318022			1	
NIISTEDAK	1	Unmodified	989.50294	0.50293991	5146	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.314	20.793	2	0.012198	17980	160511_QHF_FH_JSI11i_1	57.59	34.57			4.1601	3.9249	96.564	4	2	Linear	3.1344	2.529	NaN	1	0	Median	1.5568	1.8125	NaN	1	0	Median	0.36979	0.35392	NaN	1	1	Median	0.4762	0.48692	NaN	1	1	Median	217590000	113980000	103600000	60770000	14302000	46468000	41459000	22909000	18549000	48683000	36045000	12637000	66675000	40727000	25948000	38627	5146	36345	236799;236800;236801;236802	318023;318024;318025	318023			2	
NIITNLSK	1	Unmodified	901.52328	0.52328142	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.26	1	3						2		1	1	3	1	41.765	39.091	2	0.0064486	34187	160511_QHF_FH_JSI9i_2	62.546	36.652			1.3064	1.3049	57.396	5	4	Median	4.7969	4.0826	NaN	1	0	Median	1.0609	1.296	NaN	1	1	Median	1.3064	1.3049	22.193	3	3	Median	NaN	NaN	NaN	0	0	Median	443910000	193680000	250230000	83408000	23456000	59953000	128150000	57966000	70182000	232360000	112260000	120100000	0	0	0	38628	998	36346	236803;236804;236805;236806;236807;236808	318026;318027;318028;318029;318030;318031;318032	318027			7	
NIIVFYGSQTGTAEEFANR	0	Unmodified	2116.0225	0.022532941	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.97		12							10	4	5	8	5	80.307	75.849	2;3	5.0664E-199	38925	160513_QHF_FH_JSI9Kac_6	371.5	353.83			0.78271	0.84321	50.128	21	11	Median	1.0636	0.91922	25.082	4	0	Median	0.72606	0.88286	45.362	5	2	Median	0.78271	0.80377	75.425	7	7	Median	0.77474	0.82307	31.396	5	2	Median	4723700000	2629800000	2094000000	1020000000	581530000	438450000	1422900000	890820000	532070000	1474400000	798130000	676280000	806440000	359280000	447160000	38629	1100	36347	236809;236810;236811;236812;236813;236814;236815;236816;236817;236818;236819;236820;236821;236822;236823;236824;236825;236826;236827;236828;236829;236830	318033;318034;318035;318036;318037;318038;318039;318040;318041;318042;318043;318044;318045;318046;318047;318048;318049;318050;318051;318052;318053;318054;318055;318056;318057;318058;318059;318060;318061;318062;318063;318064;318065	318057			33	
NIKKQCCKMR	3	3 Acetyl (K)	1490.7156	0.71560877	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	35.977	26.486	3	0.029357	16431	160513_QHF_FH_JSI11Kac_4	32.008	12.268			1.1009	1.1066	23.524	3	0	Median	NaN	NaN	NaN	0	0	Median	1.394	1.653	NaN	1	0	Median	1.1009	1.0934	NaN	1	0	Median	1.0132	1.1066	NaN	1	0	Median	87279000	39155000	48124000	0	0	0	5250500	2160300	3090200	78976000	35398000	43578000	3052400	1596700	1455600	38630	2204	36348	236831;236832;236833	318066	318066			1	
NIKLGIHEDSQNR	1	Acetyl (K)	1564.7958	0.79576789	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	1			By MS/MS		15.7	0.471								1	2			3		44.019	34.165	2;3	0.00075413	18650	160513_QHF_FH_JSI11Kac_6	89.403	73.513			0.15628	0.15244	79.476	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15628	0.15244	79.476	3	3	Plateau	NaN	NaN	NaN	0	0	Median	20653000	18024000	2628900	0	0	0	0	0	0	20653000	18024000	2628900	0	0	0	38631	880	36349	236834;236835;236836	318067;318068;318069	318068	607		3	
NIKLGIHEDSQNRK	2	Acetyl (K)	1692.8907	0.89073091	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		37.022	27.577	4	0.021786	15366	160513_QHF_FH_JSI11Kac_6	38.511	26.82			0.064119	0.063586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.064119	0.063586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4073300	3915700	157630	0	0	0	0	0	0	4073300	3915700	157630	0	0	0	38632	880	36350	236837	318070	318070	607		1	
NILASNPR	0	Unmodified	883.48756	0.48756462	5504;5043	Q9Y294;Q9NVP2	ASF1A;ASF1B	Histone chaperone ASF1A;Histone chaperone ASF1B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.4	6.62		3						1	1	2	1	2		21.588	18.729	2	0.0064754	15567	160511_QHF_FH_JSI11i_2	62.464	20.177			1.2539	1.2705	11.822	4	1	Median	1.2123	1.0398	NaN	1	0	Median	1.0543	1.2765	NaN	1	0	Median	1.3241	1.3161	5.6527	2	1	Median	NaN	NaN	NaN	0	0	Median	445250000	200820000	244440000	121150000	55041000	66109000	142570000	75130000	67441000	181530000	70646000	110890000	0	0	0	38633	5504;5043	36351	236838;236839;236840;236841;236842	318071;318072;318073;318074;318075	318072			5	
NILDELKK	2	Unmodified	971.56515	0.56514624	90	L0R819	ASNSD1		yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		50.281	49.544	3	0.020381	43744	160511_QHF_FH_JSI10i_2	37.191	0			0.40553	0.43608	26.83	2	2	Median	NaN	NaN	NaN	0	0	Median	0.30581	0.36072	NaN	1	1	Median	0.53777	0.52717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35471000	22774000	12697000	0	0	0	17523000	13248000	4275100	17948000	9525900	8422300	0	0	0	38634	90	36352	236843;236844	318076;318077	318077			2	
NILDFPQHVSPSK	1	Unmodified	1480.7674	0.76742787	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	4	3	57.545	56.843	2;3	2.235E-05	48780	160511_QHF_FH_JSI12i_2	77.42	62.033			0.90642	0.96471	33.946	11	2	Median	1.1249	0.95204	1.8702	2	0	Median	0.86838	1.0828	6.1634	2	0	Median	0.79315	0.80951	45.293	4	1	Median	1.0153	1.1242	42.097	3	1	Median	2110100000	1107400000	1002700000	287790000	137500000	150290000	482150000	251500000	230650000	808820000	467010000	341800000	531340000	251420000	279910000	38635	1787	36353	236845;236846;236847;236848;236849;236850;236851;236852;236853;236854;236855	318078;318079;318080;318081;318082;318083;318084;318085;318086;318087;318088;318089;318090;318091;318092	318082			15	
NILEESLCELVAK	1	Unmodified	1516.7807	0.78069468	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			100.82	100.75	2	8.5783E-05	89214	160511_QHF_FH_JSI10i_2	113.22	77.713			1.2091	1.4759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2091	1.4759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	192680000	62518000	130160000	0	0	0	192680000	62518000	130160000	0	0	0	0	0	0	38636	2094	36354	236856	318093	318093			1	
NILEKHSLDASQGTATGPR	1	Acetyl (K)	2036.0287	0.028680952	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.3	0.452								5	2		2	3	2	56.008	45.572	3	4.0703E-05	25174	160513_QHF_FH_JSI11Kac_5	127.1	107.94			0.69207	0.68004	242.29	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.085183	0.084132	234.28	3	2	Plateau	0.19796	0.21451	323.12	2	2	Median	56808000	31402000	25406000	0	0	0	9925800	3011000	6914800	39052000	22074000	16978000	7830400	6317700	1512700	38637	122	36355	236857;236858;236859;236860;236861;236862;236863	318094;318095;318096;318097;318098;318099;318100	318096	80		7	
NILEQINALTGTLFTSK	1	Unmodified	1862.0149	0.014928368	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.61	102.56	3	0.00013763	91132	160511_QHF_FH_JSI10i_2	75.548	58.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16199000	16199000	0	0	0	0	16199000	16199000	0	0	0	0	0	0	0	38638	3252	36356	236864	318101	318101			1	
NILETLLQMK	1	Unmodified	1201.674	0.67404476	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	101.57	101.45	2	5.2838E-06	89191	160511_QHF_FH_JSI11i_2	108.98	79.891			1.3244	1.4202	27.458	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70189	0.85556	NaN	1	0	Median	1.0128	0.98222	NaN	1	0	Median	1.3244	1.4526	NaN	1	0	Median	464630000	220670000	243960000	0	0	0	123460000	72757000	50707000	148550000	65937000	82610000	192620000	81976000	110640000	38639	2107	36357	236865;236866;236867	318102;318103;318104;318105	318104			4	
NILFVITK	1	Unmodified	946.58515	0.5851534	87;4567	E9PAV3;Q13765;Q9H009;Q9BZK3	NACA;NACA2;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha-2;Putative nascent polypeptide-associated complex subunit alpha-like protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	80.736	72.241	2	0.014995	38134	160513_QHF_FH_JSI12Kac_6	69.825	46.805			2.54	2.3556	36.727	4	4	Median	2.8932	2.4909	NaN	1	1	Median	4.0104	4.735	NaN	1	1	Median	2.23	2.1741	NaN	1	1	Median	2.0552	2.2276	NaN	1	1	Median	141940000	45706000	96238000	39012000	8575100	30437000	36954000	9126600	27827000	31411000	6556000	24855000	34567000	21449000	13118000	38640	87;4567	36358	236868;236869;236870;236871;236872	318106;318107;318108;318109;318110	318109			5	
NILFVITKPDVYK	2	Unmodified	1548.8916	0.89156576	87;4567	E9PAV3;Q13765;Q9BZK3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.56		9	9						11	7	8	7	7	82.673	79.45	2;3	2.0513E-18	40165	160513_QHF_FH_JSI11Kac_6	178.32	153.47			0.065921	0.063903	44.03	24	24	Plateau	0.067832	0.062166	41.204	5	5	Linear	0.087222	0.10682	37.547	7	7	Median	0.078785	0.075878	28.404	6	6	Median	0.08382	0.087765	59.197	6	6	Median	30012000000	25024000000	4988400000	7501800000	5928500000	1573300000	9463100000	8043600000	1419500000	7341600000	5940300000	1401300000	5705700000	5111400000	594200000	38641	87;4567	36359	236873;236874;236875;236876;236877;236878;236879;236880;236881;236882;236883;236884;236885;236886;236887;236888;236889;236890;236891;236892;236893;236894;236895;236896;236897;236898;236899;236900;236901	318111;318112;318113;318114;318115;318116;318117;318118;318119;318120;318121;318122;318123;318124;318125;318126;318127;318128;318129;318130;318131;318132;318133;318134;318135;318136;318137;318138;318139;318140;318141;318142;318143;318144;318145;318146;318147;318148;318149;318150;318151	318123			41	
NILFVITKPDVYK	2	Acetyl (K)	1590.9021	0.90213044	87;4567	E9PAV3;Q13765;Q9BZK3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	2	2	3	4	91.029	82.418	2;3	8.565E-10	45998	160513_QHF_FH_JSI11Kac_6	160.67	127.45			11.508	1.5788	225.25	5	5	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7045	3.4999	119.39	2	2	Median	14.904	15.668	292.68	3	3	Plateau	579780000	320630000	259140000	88469000	46764000	41705000	119340000	64555000	54783000	153220000	78971000	74245000	218750000	130340000	88411000	38642	87;4567	36359	236902;236903;236904;236905;236906;236907;236908;236909;236910;236911;236912	318152;318153;318154;318155;318156;318157;318158;318159;318160;318161;318162;318163	318154	58		12	
NILGGTVFR	0	Unmodified	975.55016	0.55016488	576;1635	O75874;P48735	IDH1;IDH2	Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		7	7							4	4	4	2	58.577	57.685	2	3.2209E-05	49585	160511_QHF_FH_JSI12i_2	101.43	55.713			0.64846	0.74141	81.744	14	13	Median	1.4205	1.1593	104.23	4	4	Median	0.94414	1.1481	86.768	4	4	Median	1.0705	1.062	96.692	4	4	Median	0.6424	0.69224	7.4964	2	1	Median	6012400000	3061300000	2951000000	1077000000	428100000	648860000	1586000000	949840000	636180000	2345100000	1123300000	1221800000	1004300000	560050000	444220000	38643	576;1635	36360	236913;236914;236915;236916;236917;236918;236919;236920;236921;236922;236923;236924;236925;236926	318164;318165;318166;318167;318168;318169;318170;318171;318172;318173;318174;318175;318176;318177;318178	318167			15	
NILHQGQEAILQR	0	Unmodified	1518.8267	0.82667409	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		7	7							2	2	7	3	45.135	44.634	2;3	3.1467E-09	39201	160511_QHF_FH_JSI11i_3	103.34	79.737			0.56683	0.57952	79.645	8	8	Median	0.7808	0.66737	15.564	2	2	Median	0.73031	0.89988	66.631	2	2	Median	0.31438	0.31907	134.03	3	3	Median	0.43693	0.42963	NaN	1	1	Median	334850000	150580000	184270000	46659000	25299000	21360000	50982000	31452000	19530000	176090000	68301000	107790000	61121000	25532000	35589000	38644	4003	36361	236927;236928;236929;236930;236931;236932;236933;236934;236935;236936;236937;236938;236939;236940	318179;318180;318181;318182;318183;318184;318185;318186;318187;318188;318189;318190;318191;318192;318193	318183			15	
NILHSFVQLR	0	Unmodified	1225.6931	0.69314072	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				63.314	61.806	3	0.015237	50728	160511_QHF_FH_JSI9i_3	33.225	19.216			0.69943	0.60372	NaN	1	1	Median	0.69943	0.60372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5783600	3884500	1899100	5783600	3884500	1899100	0	0	0	0	0	0	0	0	0	38645	141	36362	236941	318194	318194			1	
NILIDFTK	1	Unmodified	962.54368	0.54368251	1785;1155	P52789;P19367	HK2;HK1	Hexokinase-2;Hexokinase-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	73.729	70.932	2	0.016878	62501	160511_QHF_FH_JSI11i_2	58.981	40.945			0.37019	0.34019	47.168	5	5	Median	0.27251	0.23359	53.17	2	2	Median	0.37019	0.45373	NaN	1	1	Median	0.30027	0.30634	NaN	1	1	Median	0.49265	0.55075	NaN	1	1	Median	610590000	462100000	148490000	99103000	76580000	22523000	135700000	103780000	31922000	229330000	181710000	47614000	146450000	100020000	46427000	38646	1785;1155	36363	236942;236943;236944;236945;236946	318195;318196;318197;318198;318199	318198			5	
NILIVLTK	1	Unmodified	912.6008	0.60080346	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.84		6						2	5	3	3	3	4	77.759	72.974	2	0.007143	64707	160511_QHF_FH_JSI12i_2	69.825	60.075			0.24204	0.2559	52.073	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32056	0.36981	NaN	1	1	Median	0.18275	0.17708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	277760000	169380000	108380000	111390000	37924000	73464000	55867000	55391000	475730	63166000	44448000	18718000	47344000	31622000	15723000	38647	3675	36364	236947;236948;236949;236950;236951;236952;236953;236954;236955;236956;236957;236958;236959	318200;318201;318202;318203;318204;318205;318206;318207;318208;318209;318210;318211;318212	318200			13	
NILLTIGSYK	1	Unmodified	1120.6492	0.64921022	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	2	1	1	1	76.925	71.139	2	0.0033123	65510	160511_QHF_FH_JSI10i_2	70.1	51.324			0.59102	0.50494	117.83	5	2	Median	0.45129	0.38548	38.178	2	1	Median	0.21326	0.25629	NaN	1	1	Median	1.8205	1.7398	NaN	1	0	Median	3.5077	3.834	NaN	1	0	Median	136410000	90494000	45914000	72401000	54254000	18147000	25479000	22321000	3158000	27576000	11142000	16435000	10952000	2777800	8173800	38648	1296	36365	236960;236961;236962;236963;236964	318213;318214;318215;318216;318217	318215			4	
NILLTNEQLESAR	0	Unmodified	1499.7944	0.79437091	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	5.01	2	3						1		1	2	1	2	57.625	56.767	2	3.9116E-06	50046	160511_QHF_FH_JSI10i_2	123.62	102.78			1.9642	2.0676	109.04	5	5	Median	2.373	2.0676	NaN	1	1	Median	1.3505	1.6357	141.56	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75964	0.81407	141.17	2	2	Median	365610000	164520000	201090000	98257000	32763000	65494000	123300000	56191000	67112000	0	0	0	144050000	75562000	68484000	38649	4806	36366	236965;236966;236967;236968;236969;236970	318218;318219;318220;318221;318222;318223	318223			6	
NILLTNEQLESARK	1	Unmodified	1627.8893	0.88933392	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.03		15	4						1	4	4	5	7	48.34	47.058	2;3	1.6017E-05	41316	160511_QHF_FH_JSI9i_2	115.78	101.35			0.96967	0.90877	76.386	19	18	Median	0.70764	0.60754	78.088	4	4	Median	0.69577	0.86178	89.732	4	4	Median	0.69961	0.71684	53.877	5	4	Median	1.3878	1.4889	87.59	6	6	Median	4063000000	2097200000	1965800000	681570000	339430000	342140000	939900000	527240000	412650000	1282900000	689030000	593830000	1158600000	541470000	617150000	38650	4806	36367	236971;236972;236973;236974;236975;236976;236977;236978;236979;236980;236981;236982;236983;236984;236985;236986;236987;236988;236989;236990	318224;318225;318226;318227;318228;318229;318230;318231;318232;318233;318234;318235;318236;318237;318238;318239;318240;318241;318242;318243;318244	318233			21	
NILMFTGETEATK	1	Unmodified	1453.7123	0.71228076	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1			2	1	1	70.687	67.4	2	1.0322E-05	59218	160511_QHF_FH_JSI11i_2	134.2	98.971			4.3853	4.6941	127.51	4	4	Median	NaN	NaN	NaN	0	0	Median	2.2135	2.6632	203.57	2	2	Median	2.9097	2.9805	NaN	1	1	Median	6.6093	7.3927	NaN	1	1	Median	198410000	30489000	167920000	0	0	0	48251000	9793700	38457000	94931000	13053000	81878000	55231000	7642300	47589000	38651	3115	36368	236991;236992;236993;236994	318245;318246;318247;318248	318246			4	
NILMYGPPGTGK	1	Unmodified	1246.638	0.63799361	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	2	2	2	57.797	56.936	2	0.00030648	49826	160511_QHF_FH_JSI9i_2	90.685	60.431			0.92556	0.91884	51.57	8	7	Median	1.2146	1.0359	74.455	2	2	Median	1.011	1.1944	73.089	2	2	Median	0.92556	0.91884	1.2586	2	1	Median	0.81871	0.90969	82.195	2	2	Median	921390000	463020000	458370000	169710000	79940000	89774000	153660000	75993000	77669000	277680000	127980000	149700000	320340000	179110000	141230000	38652	5035	36369	236995;236996;236997;236998;236999;237000;237001;237002	318249;318250;318251;318252;318253;318254;318255;318256;318257	318253			9	
NILNENDIVFIVEK	1	Unmodified	1658.8879	0.88793694	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		98.25	98.033	2	0.00066941	85984	160511_QHF_FH_JSI11i_2	89.548	48.959			1.0193	0.99328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0193	0.99328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7940700	3468000	4472700	0	0	0	0	0	0	7940700	3468000	4472700	0	0	0	38653	4794	36370	237003	318258	318258			1	
NILNKPEVNQK	2	Unmodified	1295.7197	0.7197494	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	1				By MS/MS	3	0			4										4	23.298	23.28	2;3	0.00058377	19201	160511_QHF_FH_JSI12i_3	74.944	66.431			1.3221	1.3353	109.18	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3221	1.3353	109.18	4	4	Median	360150000	184060000	176100000	0	0	0	0	0	0	0	0	0	360150000	184060000	176100000	38654	1779	36371	237004;237005;237006;237007	318259;318260;318261;318262	318261			4	
NILPFDHTR	0	Unmodified	1111.5774	0.57744226	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	44.693	43.638	3	0.0015482	38337	160511_QHF_FH_JSI10i_2	48.44	41.999			0.89049	0.87752	66.99	5	2	Median	1.0536	0.90992	NaN	1	0	Median	0.6455	0.79966	NaN	1	0	Median	0.89049	0.87752	NaN	1	0	Median	1.4434	1.5908	115.5	2	2	Median	363480000	190760000	172720000	58714000	30498000	28217000	88852000	48133000	40718000	145950000	77410000	68536000	69969000	34718000	35251000	38655	2239	36372	237008;237009;237010;237011;237012	318263;318264;318265;318266;318267	318267			5	
NILQLHDLTTGALLK	1	Unmodified	1648.9512	0.9512059	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								1	3	3	3	87.412	86.732	2;3	0.00012113	76170	160511_QHF_FH_JSI11i_2	89.541	71.438			0.74522	0.82285	129.31	10	10	Median	1.7942	1.5585	NaN	1	1	Median	0.63972	0.80997	129.98	3	3	Median	0.86812	0.83593	158.07	3	3	Median	0.6222	0.69938	174.69	3	3	Median	353210000	160540000	192660000	30228000	8991400	21237000	102940000	60272000	42672000	133280000	50488000	82796000	86749000	40792000	45957000	38656	1615	36373	237013;237014;237015;237016;237017;237018;237019;237020;237021;237022	318268;318269;318270;318271;318272;318273;318274;318275;318276;318277;318278	318273			11	
NILSILHTYSSLNHVYK	1	Unmodified	2001.0684	0.068360922	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	1	1	2	84.39	75.87	3;4	9.1374E-08	42883	160513_QHF_FH_JSI10Kac_6	162.4	124.85			2.9957	2.5906	395.43	4	4	Median	0.043883	0.038263	310.27	3	3	Plateau	211.11	252.3	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1122300000	564500000	557750000	598800000	357470000	241330000	316760000	338190	316420000	46662000	46662000	0	160030000	160030000	0	38657	5138	36374	237023;237024;237025;237026;237027;237028;237029	318279;318280;318281;318282;318283;318284;318285	318285			7	
NILSSADYVER	0	Unmodified	1265.6252	0.62518031	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	50.363	49.294	2	0.0030686	42502	160511_QHF_FH_JSI11i_2	69.979	49.65			0.43752	0.32858	58.795	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.41238	0.50267	NaN	1	1	Median	0.46419	0.47828	NaN	1	1	Median	0.60167	0.66552	97.083	2	2	Median	309630000	204560000	105060000	0	0	0	58161000	40335000	17826000	93373000	58645000	34728000	158090000	105580000	52507000	38658	2313	36375	237030;237031;237032;237033	318286;318287;318288;318289	318288			4	
NILSVVGTDALK	1	Unmodified	1228.7027	0.70270235	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	78.322	75.009	2	9.1184E-05	67393	160511_QHF_FH_JSI9i_2	104.52	97.854			3.1237	3.3862	95.747	4	4	Linear	2.3938	2.0928	NaN	1	1	Median	4.8858	5.9789	NaN	1	1	Median	0.58936	0.57556	NaN	1	1	Median	1.8424	2.0117	NaN	1	1	Median	106920000	39420000	67500000	33496000	9993100	23503000	31949000	8005400	23943000	4125000	2460200	1664800	37351000	18961000	18390000	38659	308	36376	237034;237035;237036;237037;237038	318290;318291;318292;318293;318294	318291			5	
NILSVVGTDALKK	2	Unmodified	1356.7977	0.79766537	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		66.724	66.03	3	0.0020498	57629	160511_QHF_FH_JSI11i_2	51.211	29.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38660	308	36377	237039;237040	318295;318296	318295			2	
NILTEIYR	0	Unmodified	1020.5604	0.56039521	2722	Q15907	RAB11B	Ras-related protein Rab-11B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	4	1	64.099	63.27	2	0.0012164	56064	160511_QHF_FH_JSI10i_2	92.47	65.333			1.1241	1.1395	37.949	5	2	Median	1.3371	1.1395	NaN	1	0	Median	1.1548	1.4256	NaN	1	0	Median	0.76253	0.77629	52.871	2	2	Median	1.0473	1.1896	NaN	1	0	Median	1418500000	804210000	614260000	157040000	78898000	78142000	220890000	114130000	106760000	747690000	421770000	325920000	292850000	189420000	103440000	38661	2722	36378	237041;237042;237043;237044;237045;237046;237047	318297;318298;318299;318300;318301;318302;318303;318304;318305;318306	318306			10	
NILYLLHQR	0	Unmodified	1168.6717	0.671677	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		72.703	64.397	2;3	0.00010509	34220	160513_QHF_FH_JSI9Kac_6	100.15	59.162			19.282	22.749	75.027	4	4	Linear	7.3844	6.2175	NaN	1	1	Median	12.492	14.752	73.356	2	2	Median	4.4811	4.3507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105830000	8354500	97474000	23104000	1508000	21596000	68177000	2903700	65274000	14547000	3942800	10604000	0	0	0	38662	378	36379	237048;237049;237050;237051;237052	318307;318308;318309;318310;318311	318308			5	
NIMTQNVER	0	Unmodified	1103.5393	0.53934219	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.34		4	1				2			2	1	2	2	26.48	23.164	2	3.5787E-05	19212	160511_QHF_FH_JSI11i_2	99.802	68.728			1.0302	1.0293	74.632	7	2	Median	1.7156	1.4684	26.986	2	1	Median	0.99538	1.2168	NaN	1	0	Median	1.0352	1.0255	0.51471	2	0	Median	0.3322	0.3594	99.591	2	1	Median	606370000	336800000	269570000	122010000	51208000	70807000	136930000	79103000	57825000	244200000	124010000	120200000	103230000	82481000	20746000	38663	4459	36380	237053;237054;237055;237056;237057;237058;237059	318312;318313;318314;318315;318316;318317;318318;318319;318320;318321	318317			9	
NINADEAAAMGAVYQAAALSK	1	Unmodified	2078.0103	0.010253695	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.24	0.424	13	4								4	4	5	4	94.772	94.485	2;3	4.3839E-22	85940	160511_QHF_FH_JSI11i_1	160.25	146.53			0.98179	0.99585	54.686	14	12	Median	2.7423	2.2636	108.46	3	3	Median	0.82045	0.97912	46.021	4	2	Median	1.3789	1.3203	39.241	4	4	Median	0.96778	0.9611	34.688	3	3	Median	1098000000	483870000	614120000	97098000	37049000	60049000	466680000	218070000	248610000	375900000	168660000	207240000	158310000	60093000	98219000	38664	5633	36381	237060;237061;237062;237063;237064;237065;237066;237067;237068;237069;237070;237071;237072;237073;237074;237075;237076	318322;318323;318324;318325;318326;318327;318328;318329;318330;318331;318332;318333;318334;318335;318336;318337;318338;318339	318324			17	
NINDAWVCTNDMFR	0	Unmodified	1754.7505	0.75047396	1974	P61970	NUTF2	Nuclear transport factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	78.885	78.085	2	8.7542E-10	68636	160511_QHF_FH_JSI11i_2	190.46	180.8			0.71272	0.60093	48.234	5	5	Median	1.1559	0.98217	69.477	2	2	Median	0.49591	0.59823	NaN	1	1	Median	0.46055	0.46731	NaN	1	1	Median	0.76868	0.88526	NaN	1	1	Median	208830000	112070000	96766000	42941000	17324000	25617000	52357000	36062000	16295000	59223000	30442000	28781000	54312000	28239000	26073000	38665	1974	36382	237077;237078;237079;237080;237081	318340;318341;318342;318343;318344;318345	318344			6	
NINDVDTALSFYHMAGASLDK	1	Unmodified	2281.0685	0.068496856	4339	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	96.887	96.649	3	8.5428E-06	84694	160511_QHF_FH_JSI9i_2	84.166	74.414			0.27312	0.29063	208.96	3	3	Plateau	0.71877	0.61409	NaN	1	1	Median	12.027	14.867	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27312	0.29063	NaN	1	1	Median	36754000	14464000	22290000	10670000	1286800	9383600	9768200	761950	9006300	0	0	0	16316000	12415000	3900400	38666	4339	36383	237082;237083;237084	318346;318347;318348	318347			3	
NINIGDISIK	1	Unmodified	1085.6081	0.60807369	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	2	1	68.738	67.974	2	0.00041082	59907	160511_QHF_FH_JSI9i_2	89.08	47.65			1.0747	1.1348	29.584	4	1	Median	1.275	1.107	NaN	1	0	Median	0.98393	1.1632	NaN	1	0	Median	0.66749	0.66507	NaN	1	1	Median	1.174	1.2918	NaN	1	0	Median	230490000	115300000	115190000	41792000	16686000	25106000	68164000	33666000	34498000	60544000	30257000	30287000	59988000	34689000	25299000	38667	3846	36384	237085;237086;237087;237088;237089;237090;237091	318349;318350;318351;318352;318353;318354;318355	318350			7	
NINLIVQK	1	Unmodified	940.57057	0.57056597	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		2	4	1	1	50.503	47.195	2	0.0030984	40268	160511_QHF_FH_JSI12i_2	81.613	69.708			9.1036	10.443	183.6	8	8	Median	11.648	10.018	37.378	2	2	Median	9.3323	11.1	266.76	4	4	Median	7.0348	6.821	NaN	1	1	Median	9.2442	10.217	NaN	1	1	Median	672770000	181730000	491040000	130500000	22598000	107900000	304530000	128820000	175710000	59918000	5708400	54210000	177830000	24609000	153220000	38668	2046;2296	36385	237092;237093;237094;237095;237096;237097;237098;237099	318356;318357;318358;318359;318360;318361;318362;318363	318357			8	
NINPDVLFEVHNYNITTVENFQHFMDR	0	Unmodified	3305.5564	0.55639583	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									3	1			2	93.776	84.529	4	1.8755E-15	45810	160513_QHF_FH_JSI12Kac_6	138.36	128.65			0.85793	0.81724	114.22	2	2	Median	2.1668	1.8328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33969	0.3644	NaN	1	1	Median	178500000	48306000	130190000	60358000	12316000	48042000	0	0	0	0	0	0	118140000	35991000	82149000	38669	4615	36386	237100;237101;237102	318364;318365;318366	318365			3	
NINPLTAMSYLR	0	Unmodified	1391.7231	0.72312022	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	91.293	90.422	2	0.0043786	78089	160511_QHF_FH_JSI12i_2	63.624	26.28			0.88592	1.0017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88592	1.0017	NaN	1	1	Median	10958000	5260800	5697300	0	0	0	0	0	0	0	0	0	10958000	5260800	5697300	38670	3935	36387	237103	318367	318367			1	
NINPSTANSPK	1	Unmodified	1141.5728	0.57275081	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	5.53	3					5	3			1	4	2	4	18.667	12.761	2	7.9501E-05	11608	160511_QHF_FH_JSI12i_1	100.48	76.322			1.2303	1.2759	53.408	11	11	Median	1.5962	1.3092	NaN	1	1	Median	0.8291	0.97084	73.504	4	4	Median	0.70056	0.68074	3.1445	2	2	Median	1.3439	1.4193	50.308	4	4	Median	338510000	211910000	126600000	74969000	29528000	45441000	12256000	6975600	5280400	127290000	96092000	31196000	124000000	79318000	44685000	38671	1598	36388	237104;237105;237106;237107;237108;237109;237110;237111;237112;237113;237114	318368;318369;318370;318371;318372;318373;318374;318375;318376;318377;318378	318369			11	
NIPEAHQDAFK	1	Unmodified	1268.6149	0.61494998	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	28.261	27.15	2	0.013996	22798	160511_QHF_FH_JSI12i_2	52.79	34.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13708000	13708000	0	0	0	0	7789800	7789800	0	0	0	0	5918700	5918700	0	38672	4261	36389	237115;237116	318379;318380	318379			2	
NIPEDNADMAR	0	Unmodified	1244.5455	0.54554978	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	1	2	28.37	25.727	2	0.00036899	22779	160511_QHF_FH_JSI10i_1	88.496	83.712			1.1636	1.0757	20.221	4	1	Median	1.1693	0.95152	NaN	1	0	Median	0.72343	0.85535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1761	1.2644	5.5173	2	0	Median	1294300000	664770000	629570000	287010000	150920000	136080000	551910000	282930000	268980000	0	0	0	455420000	230910000	224510000	38673	1381	36390	237117;237118;237119;237120;237121	318381;318382;318383;318384;318385	318383			5	
NIPEDNADMAR	0	Oxidation (M)	1260.5405	0.54046441	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		23.218	15.692	2	0.038672	10110	160513_QHF_FH_JSI11Kac_3	38.086	17.185			1.0152	0.97428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0152	0.97428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3236800	1589000	1647800	0	0	0	0	0	0	3236800	1589000	1647800	0	0	0	38674	1381	36390	237122	318386	318386			1	
NIPEGSHQYELLK	1	Unmodified	1526.7729	0.77290718	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	1	3	45.548	44.468	2;3	6.6576E-05	38353	160511_QHF_FH_JSI12i_2	75.102	59.346			0.84363	1.0315	25.966	7	4	Median	NaN	NaN	NaN	0	0	Median	0.84363	1.0384	33.789	3	2	Median	1.0162	1.0315	NaN	1	0	Median	0.79358	0.88204	29.337	3	2	Median	539180000	276010000	263180000	0	0	0	205010000	106230000	98776000	59200000	27754000	31446000	274970000	142020000	132960000	38675	4788	36391	237123;237124;237125;237126;237127;237128;237129	318387;318388;318389;318390;318391;318392;318393	318387			7	
NIPGITLLNVSK	1	Unmodified	1267.75	0.7499869	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.55	5	4	5				1	4	4	5	5	8	5	83.868	79.818	2	3.5525E-05	73712	160511_QHF_FH_JSI9i_2	104.82	77.082			1.0431	1.0382	37.166	23	5	Median	1.1028	0.94087	8.8252	5	0	Median	0.95289	1.1237	23.485	5	1	Median	1.1631	1.14	60.92	8	4	Median	0.97968	1.0801	10.632	5	0	Median	14036000000	6745100000	7290800000	2627400000	1197600000	1429800000	3134200000	1675100000	1459200000	5114200000	2250900000	2863300000	3160100000	1621600000	1538500000	38676	1457	36392	237130;237131;237132;237133;237134;237135;237136;237137;237138;237139;237140;237141;237142;237143;237144;237145;237146;237147;237148;237149;237150;237151;237152	318394;318395;318396;318397;318398;318399;318400;318401;318402;318403;318404;318405;318406;318407;318408;318409;318410;318411;318412;318413;318414;318415;318416;318417;318418;318419;318420;318421;318422;318423;318424;318425;318426;318427;318428;318429;318430;318431;318432;318433;318434;318435;318436;318437;318438;318439;318440;318441	318425			48	
NIPGPHMVLVPK	1	Unmodified	1300.7326	0.73256269	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.8		7	4						1	2	2	4	4	57.479	55.961	2;3	4.1063E-07	49330	160511_QHF_FH_JSI10i_2	103.91	103.91			0.95714	0.94966	26.784	12	5	Median	0.90936	0.77195	7.6376	2	1	Median	0.64201	0.77733	22.902	2	1	Median	1.0173	1.0172	11.201	4	1	Median	0.95307	1.063	36.757	4	2	Median	1044600000	527840000	516710000	149150000	70969000	78180000	164340000	89639000	74701000	420340000	199920000	220430000	310720000	167310000	143410000	38677	403	36393	237153;237154;237155;237156;237157;237158;237159;237160;237161;237162;237163;237164	318442;318443;318444;318445;318446;318447;318448;318449;318450;318451;318452;318453;318454;318455;318456;318457	318454			16	
NIPIIVLPLK	1	Unmodified	1118.7427	0.74271667	469	O75054	IGSF3	Immunoglobulin superfamily member 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	100.02	99.875	2	0.015086	86003	160511_QHF_FH_JSI12i_2	51.854	48.283			0.71215	0.63803	28.54	3	3	Median	0.71215	0.63803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5723	0.56004	NaN	1	1	Median	0.86998	0.96725	NaN	1	1	Median	24323000	14791000	9531800	4635700	2554100	2081700	0	0	0	10900000	6681600	4218300	8787700	5555800	3231800	38678	469	36394	237165;237166;237167	318458;318459;318460	318458			3	
NIPIPTLK	1	Unmodified	894.55385	0.55385327	5130	Q9NYL9	TMOD3	Tropomodulin-3	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	64.591	63.778	2	0.0046723	56199	160511_QHF_FH_JSI9i_2	67.981	54.992			1.0973	1.0595	6.7654	5	0	Median	1.2435	1.0595	NaN	1	0	Median	0.86306	1.0592	NaN	1	0	Median	1.1519	1.1288	10.727	2	0	Median	1.0254	1.1598	NaN	1	0	Median	393650000	201530000	192120000	65472000	29019000	36454000	76967000	48191000	28776000	158990000	78564000	80431000	92217000	45754000	46464000	38679	5130	36395	237168;237169;237170;237171;237172	318461;318462;318463;318464;318465	318464			5	
NIPLLFLQNITGFMVGR	0	Unmodified	1932.0655	0.06552415	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	4	3	4	101.33	93.016	2;3	3.7456E-69	53165	160513_QHF_FH_JSI9Kac_6	257.52	231.48			1.9241	1.6533	143.77	13	12	Median	5.3696	4.5172	142.66	3	3	Plateau	1.1543	1.3718	203.82	4	4	Median	3.8665	3.6822	110.42	3	2	Plateau	0.32347	0.34309	167	3	3	Plateau	11211000000	5098100000	6112700000	2053700000	762200000	1291500000	6861200000	3412100000	3449100000	1898500000	640270000	1258200000	397400000	283580000	113810000	38680	4852	36396	237173;237174;237175;237176;237177;237178;237179;237180;237181;237182;237183;237184;237185;237186	318466;318467;318468;318469;318470;318471;318472;318473;318474;318475;318476;318477;318478;318479;318480	318470			15	
NIPLLFLQNITGFMVGR	0	Oxidation (M)	1948.0604	0.060438772	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS		16	0									2		1	1		98.739	91.171	2	4.6708E-10	54335	160513_QHF_FH_JSI10Kac_6	173.72	143.15			0.41218	0.44213	55.977	2	2	Median	NaN	NaN	NaN	0	0	Median	0.24826	0.29761	NaN	1	1	Median	0.68434	0.65683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	422710000	312570000	110140000	0	0	0	308750000	228940000	79813000	113960000	83632000	30325000	0	0	0	38681	4852	36396	237187;237188	318481;318482	318482		2541	2	
NIPMSVNDIVKPGMR	1	Unmodified	1669.8644	0.8643815	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	68.585	68.007	3	3.261E-05	60465	160511_QHF_FH_JSI11i_3	113.72	88.006			0.78261	0.80814	28.916	6	3	Median	0.78546	0.66877	55.029	2	2	Median	0.79083	0.96462	NaN	1	0	Median	0.82434	0.80354	13.862	2	1	Median	0.75012	0.73687	NaN	1	0	Median	673780000	385290000	288480000	119800000	68631000	51173000	127550000	68182000	59366000	297380000	174060000	123320000	129040000	74419000	54626000	38682	5269	36397	237189;237190;237191;237192;237193;237194	318483;318484;318485;318486;318487;318488;318489;318490;318491	318484			9	
NIPMTLELLQSTR	0	Unmodified	1514.8127	0.81266351	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		12								2	2	4	4	91.638	91.062	2;3	0.00026563	79827	160511_QHF_FH_JSI11i_2	50.897	38.129			1.0741	1.2464	309.53	8	8	Median	1.3857	1.1903	386.65	2	2	Median	0.83531	1.0251	372.29	2	2	Median	1.6273	1.6522	438.31	2	2	Median	2.0103	2.2453	427.88	2	2	Median	550700000	297490000	253220000	118930000	60129000	58797000	136180000	79169000	57011000	174020000	95128000	78889000	121580000	63062000	58518000	38683	1220	36398	237195;237196;237197;237198;237199;237200;237201;237202;237203;237204;237205;237206	318492;318493;318494;318495;318496;318497;318498;318499;318500;318501;318502;318503;318504;318505	318503			14	
NIPPYFVALVPQEEELDDQK	1	Unmodified	2343.1634	0.1634431	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	1	2	2	101.27	101.17	2;3	5.8964E-16	91874	160511_QHF_FH_JSI11i_1	153.94	135.36			1.1276	0.99513	19.044	7	1	Median	1.1903	1.0084	4.5219	2	0	Median	0.84112	0.99513	NaN	1	0	Median	1.103	1.072	15.406	2	1	Median	0.88512	0.9274	41.308	2	0	Median	3386800000	1822500000	1564300000	430390000	192130000	238260000	835610000	487830000	347780000	1006000000	471190000	534830000	1114800000	671350000	443410000	38684	1023	36399	237207;237208;237209;237210;237211;237212;237213	318506;318507;318508;318509;318510;318511;318512;318513	318507			7	
NIPQGAPVK	1	Unmodified	922.52362	0.52361577	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	24.621	24.029	2	0.0045695	21061	160511_QHF_FH_JSI10i_1	66.682	31.874			0.773	0.62395	67.295	7	7	Median	1.3198	1.0834	78.04	2	2	Median	0.27257	0.30674	NaN	1	1	Median	0.65452	0.63091	83.94	2	2	Median	0.61386	0.64121	56.592	2	2	Median	222270000	136310000	85955000	44068000	17585000	26483000	34183000	27664000	6518600	63282000	40102000	23181000	80735000	50962000	29774000	38685	2405	36400	237214;237215;237216;237217;237218;237219;237220	318514;318515;318516;318517;318518;318519;318520	318518			7	
NIPQMSFDDTEREPDQTFSLNR	0	Unmodified	2639.1922	0.19219382	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			75.368	74.617	3	0.0033942	66387	160511_QHF_FH_JSI10i_2	42.123	38.313			0.67108	0.82976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67108	0.82976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81282000	55665000	25616000	0	0	0	81282000	55665000	25616000	0	0	0	0	0	0	38686	4598	36401	237221	318521	318521			1	
NIPQSTEILK	1	Unmodified	1141.6343	0.63428844	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	47.441	46.759	2	0.00012854	42076	160511_QHF_FH_JSI10i_1	98.033	53.586			1.789	1.6788	96.682	7	7	Median	0.93631	0.76633	110.91	2	2	Median	0.74826	0.86872	138.22	2	2	Median	0.76018	0.74336	120.6	2	2	Median	2.2891	2.3121	NaN	1	1	Median	1135500000	627580000	507870000	261010000	142540000	118480000	337950000	210140000	127810000	356190000	197540000	158650000	180310000	77375000	102940000	38687	696	36402	237222;237223;237224;237225;237226;237227;237228	318522;318523;318524;318525;318526;318527;318528	318526			7	
NIQACKELAQTTR	1	Acetyl (K)	1573.7882	0.78823967	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		50.839	40.174	2	0.0002126	23576	160513_QHF_FH_JSI11Kac_4	99.522	62.997			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	975310	975310	0	0	0	0	0	0	0	975310	975310	0	0	0	0	38688	1721	36403	237229	318529	318529	1736		1	
NIQDSVPK	1	Unmodified	899.47125	0.47124585	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	20.608	20.358	2	0.0029113	17846	160511_QHF_FH_JSI12i_1	75.109	32.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38689	133	36404	237230;237231;237232;237233	318530;318531;318532;318533	318532			4	
NIQDTSDLDAIAK	1	Unmodified	1402.694	0.69398816	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						5					1	2	2	61.26	52.06	2	0.00023978	27333	160513_QHF_FH_JSI11Kac_3	96.015	59.322			0.6646	0.71631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6646	0.71631	NaN	1	1	Median	1696000	1210300	485630	0	0	0	0	0	0	0	0	0	1696000	1210300	485630	38690	5147	36405	237234;237235;237236;237237;237238	318534;318535;318536;318537;318538	318535			5	
NIQFAHANKPK	2	Unmodified	1266.6833	0.68330431	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		15.914	15.226	3;4	0.0027805	12098	160511_QHF_FH_JSI11i_3	59.542	29.211			1.3332	0.55773	51.831	3	3	Plateau	1.4219	1.165	NaN	1	1	Median	1.3332	1.516	NaN	1	1	Median	0.58791	0.55773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126820000	61349000	65471000	28998000	10880000	18118000	41054000	17159000	23895000	56768000	33310000	23458000	0	0	0	38691	2520	36406	237239;237240;237241	318539;318540;318541	318539			3	
NIQFAHANKPK	2	Acetyl (K)	1308.6939	0.693869	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	38.411	29.196	3	0.047055	15354	160513_QHF_FH_JSI12Kac_6	34.193	25.68			3.93	4.2542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.93	4.2542	NaN	1	1	Median	3805600	494780	3310800	0	0	0	0	0	0	0	0	0	3805600	494780	3310800	38692	2520	36406	237242	318542	318542			1	
NIQFEAFHVFK	1	Unmodified	1378.7034	0.70337105	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		4							5	2	2	2	3	77.129	71.964	3	0.00024482	38094	160513_QHF_FH_JSI11Kac_6	77.593	64.761			1.0287	1.0683	62.956	9	6	Median	3.1752	2.7047	24.818	2	2	Median	1.1906	1.4021	64.085	2	1	Median	0.94173	0.93957	18.158	2	0	Median	0.79009	0.84639	81.781	3	3	Median	403900000	204780000	199120000	71324000	29369000	41955000	125500000	61756000	63748000	123960000	75515000	48446000	83115000	38144000	44971000	38693	5561	36407	237243;237244;237245;237246;237247;237248;237249;237250;237251	318543;318544;318545;318546;318547;318548;318549;318550;318551;318552;318553;318554	318544			12	
NIQGLFAPLK	1	Unmodified	1099.639	0.63897988	5491	Q9Y244	POMP	Proteasome maturation protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	77.639	76.415	2	0.012054	66006	160511_QHF_FH_JSI12i_2	55.531	49.359			6.5668	7.2794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.5668	7.2794	NaN	1	1	Median	28160000	5916400	22244000	0	0	0	0	0	0	0	0	0	28160000	5916400	22244000	38694	5491	36408	237252	318555	318555			1	
NIQTDNNK	1	Unmodified	945.45157	0.45157304	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.3673	5.0257	2	0.0091294	3022	160511_QHF_FH_JSI12i_1	65.313	44.753			1.0955	1.1339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0955	1.1339	NaN	1	1	Median	52672000	28662000	24010000	0	0	0	0	0	0	0	0	0	52672000	28662000	24010000	38695	4330	36409	237253	318556	318556			1	
NIQVSHQEFSK	1	Unmodified	1315.6521	0.65206377	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		6							3	3	1	4	1	26.712	23.918	2;3	4.7043E-06	19995	160511_QHF_FH_JSI12i_2	115.78	55.192			1.8746	1.8841	127.92	8	8	Median	0.78601	0.68269	140.61	2	2	Median	3.9581	4.7683	NaN	1	1	Median	3.1855	3.2365	147.92	4	4	Linear	1.6993	1.9239	NaN	1	1	Median	718320000	264980000	453340000	55463000	19867000	35595000	53298000	11182000	42116000	544800000	206160000	338640000	64755000	27770000	36985000	38696	3766	36410	237254;237255;237256;237257;237258;237259;237260;237261;237262	318557;318558;318559;318560;318561;318562;318563;318564;318565	318557			9	
NIQVSHQEFSKMK	2	Acetyl (K)	1616.7981	0.79807608	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		50.574	40.862	3	0.00017368	22150	160513_QHF_FH_JSI11Kac_6	89.46	82.403			0.1637	0.15915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1637	0.15915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14263000	13407000	855910	0	0	0	0	0	0	14263000	13407000	855910	0	0	0	38697	3766	36411	237263	318566	318566	2931		1	
NIRDNEEK	1	Unmodified	1016.4887	0.48868683	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.74		7	1					3		2	4	4	1	5.1097	2.3135	2;3	0.0080527	1793	160513_QHF_FH_JSI11Kac_5	56.258	25.184			1.3637	1.3897	113.79	11	8	Median	0.92635	0.79829	224.12	2	2	Median	1.0162	1.2358	155.89	4	3	Median	1.3785	1.3939	25.731	4	3	Median	0.79354	0.86812	NaN	1	0	Median	2075800000	793550000	1282300000	228920000	82947000	145970000	1005600000	422120000	583520000	827990000	281120000	546870000	13284000	7363200	5920300	38698	3914;205	36412	237264;237265;237266;237267;237268;237269;237270;237271;237272;237273;237274	318567;318568;318569;318570;318571;318572;318573;318574;318575;318576;318577	318573			11	
NIRDNEEKDSAFR	1	Acetyl (K)	1634.7649	0.76486169	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	1	0	0	2			By MS/MS		15	0								1				1		36.645	26.761	3	0.011797	15699	160513_QHF_FH_JSI11Kac_5	60.401	48.424			0.47883	0.46889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47883	0.46889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4065900	3260900	805040	0	0	0	0	0	0	4065900	3260900	805040	0	0	0	38699	3914;205	36413	237275	318578	318578	111		1	
NISAISYINQR	0	Unmodified	1277.6728	0.67279921	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.33	6.13		2						1		1	1	1		53.85	53.129	2	0.0014279	27839	160513_QHF_FH_JSI9Kac_5	77.677	38.529			8.8495	9.7133	4.2615	2	2	Median	NaN	NaN	NaN	0	0	Median	8.2818	10.01	NaN	1	1	Median	9.4562	9.425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	108800000	21728000	87070000	0	0	0	52257000	6359300	45898000	56541000	15368000	41173000	0	0	0	38700	3839	36414	237276;237277;237278	318579;318580;318581	318579			3	
NISELFYYAQK	1	Unmodified	1374.682	0.68196691	3441;3442	Q8IXI1;Q8IXI2	RHOT2;RHOT1	Mitochondrial Rho GTPase 2;Mitochondrial Rho GTPase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.502	80.726	2	3.1745E-06	69770	160511_QHF_FH_JSI12i_2	122.26	94.515			2.9679	3.1097	30.308	4	4	Median	2.4055	2.0913	NaN	1	1	Median	3.5439	4.368	NaN	1	1	Median	3.0298	2.9812	NaN	1	1	Median	2.9072	3.2436	NaN	1	1	Median	149920000	50253000	99662000	33815000	14917000	18898000	23750000	8091200	15658000	55792000	17347000	38445000	36558000	9897500	26660000	38701	3441;3442	36415	237279;237280;237281;237282	318582;318583;318584;318585	318582			4	
NISFGRDQDNK	1	Unmodified	1292.6109	0.61092723	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	1	By MS/MS				13	0						1				1				17.871	0.059427	4	0.028634	5636	160513_QHF_FH_JSI9Kac_3	23.376	4.133			1.2349	1.0121	NaN	1	0	Median	1.2349	1.0121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213990000	100160000	113830000	213990000	100160000	113830000	0	0	0	0	0	0	0	0	0	38702	442	36416	237283	318586	318586			1	
NISFNDK	1	Unmodified	836.40283	0.40283194	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.85	2	8	1			1	2			2	3	6	3	24.637	22.671	2	0.014343	19835	160511_QHF_FH_JSI10i_1	67.032	43.06			0.36869	0.3648	140.85	13	13	Median	1.8023	1.5213	225.9	2	2	Median	0.26083	0.30783	157.42	3	3	Plateau	0.74796	0.72046	141.33	6	6	Median	0.74435	0.8268	174.08	2	2	Median	9186500000	4761200000	4425300000	1492500000	451270000	1041200000	2373000000	1386600000	986380000	3330800000	1820600000	1510100000	1990300000	1102700000	887600000	38703	1073;1426;1270	36417	237284;237285;237286;237287;237288;237289;237290;237291;237292;237293;237294;237295;237296;237297	318587;318588;318589;318590;318591;318592;318593;318594;318595;318596;318597;318598;318599;318600;318601;318602	318591			16	
NISFNDKK	2	Unmodified	964.49779	0.49779495	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	15.411	15.059	3	0.034094	11772	160511_QHF_FH_JSI12i_3	31.422	17.652			2.1353	1.9845	8.7338	2	2	Median	2.495	2.1109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8274	1.8656	NaN	1	1	Median	181610000	75133000	106480000	71534000	31370000	40164000	0	0	0	0	0	0	110080000	43763000	66318000	38704	1073;1426;1270	36418	237298;237299	318603;318604	318604			2	
NISFTVWDVGGQDK	1	Unmodified	1564.7522	0.75217174	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	6.19	6	6	7					4	4	6	7	7	7	82.221	78.971	2;3	1.1756E-55	41642	160513_QHF_FH_JSI10Kac_6	210.64	158.71			0.85827	0.9419	30.705	27	15	Median	0.96458	0.81183	36.733	6	2	Median	0.80152	0.94345	27.362	7	4	Median	0.85827	0.89317	29.701	7	5	Median	0.96351	1.0552	32.286	7	4	Median	4504600000	2388000000	2116600000	586110000	303240000	282870000	1563500000	950850000	612630000	1290800000	572080000	718750000	1064200000	561810000	502400000	38705	1944;2125	36419	237300;237301;237302;237303;237304;237305;237306;237307;237308;237309;237310;237311;237312;237313;237314;237315;237316;237317;237318;237319;237320;237321;237322;237323;237324;237325;237326	318605;318606;318607;318608;318609;318610;318611;318612;318613;318614;318615;318616;318617;318618;318619;318620;318621;318622;318623;318624;318625;318626;318627;318628;318629;318630;318631;318632;318633;318634;318635;318636;318637;318638;318639;318640;318641;318642;318643;318644;318645;318646;318647;318648;318649;318650;318651;318652;318653;318654;318655;318656;318657	318657			53	
NISHDTFGTTYGR	0	Unmodified	1467.6743	0.67425577	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									2	3	2	30.268	29.467	2;3	0.00078818	25680	160511_QHF_FH_JSI10i_2	77.062	73.045			0.63491	0.65001	52.57	7	5	Median	NaN	NaN	NaN	0	0	Median	1.0116	1.2348	94.042	2	2	Median	0.63491	0.65001	35.636	3	2	Median	0.62222	0.69386	33.84	2	1	Median	415550000	234130000	181420000	0	0	0	39349000	19967000	19382000	242820000	131470000	111350000	133380000	82685000	50695000	38706	4762	36420	237327;237328;237329;237330;237331;237332;237333	318658;318659;318660;318661;318662;318663;318664	318663			5	
NISLHGDGPLR	0	Unmodified	1177.6204	0.62036971	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			35.571	34.615	3	0.035353	30465	160511_QHF_FH_JSI10i_2	25.068	7.2036			0.19675	0.2427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19675	0.2427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186590000	163390000	23198000	0	0	0	186590000	163390000	23198000	0	0	0	0	0	0	38707	3483	36421	237334	318665	318665			1	
NISLIIMDAR	0	Unmodified	1144.6274	0.62742892	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.738	78.018	2	0.013517	69432	160511_QHF_FH_JSI10i_2	53.756	28.834			0.074052	0.092088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.074052	0.092088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10750000	9389000	1361100	0	0	0	10750000	9389000	1361100	0	0	0	0	0	0	38708	1501	36422	237335	318666	318666			1	
NISMSVEGDYTYLR	0	Unmodified	1646.761	0.76102187	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			69.35	68.504	2	0.00015831	60393	160511_QHF_FH_JSI9i_2	110.31	95.162			0.61189	0.62746	2.6997	2	2	Median	0.71278	0.6156	NaN	1	1	Median	0.52527	0.63955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80755000	43071000	37684000	43087000	17991000	25096000	37667000	25080000	12587000	0	0	0	0	0	0	38709	5658	36423	237336;237337	318667;318668	318667			2	
NISNQLSIGTDISAQHPELR	0	Unmodified	2192.1186	0.11855859	4075	Q96FV2	SCRN2	Secernin-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	65.865	64.565	3	0.00016839	55651	160511_QHF_FH_JSI12i_2	54.834	46.444			1.0485	1.1625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0485	1.1625	NaN	1	0	Median	36746000	21750000	14996000	0	0	0	0	0	0	0	0	0	36746000	21750000	14996000	38710	4075	36424	237338	318669	318669			1	
NISNTVMK	1	Unmodified	905.46405	0.46405199	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.527	20.57	2	0.012376	17531	160511_QHF_FH_JSI9i_2	52.716	23.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38711	2291	36425	237339	318670	318670			1	
NISQDMTQTSGTNLTSEELRK	1	Unmodified	2352.1227	0.12271727	1820	P54252	ATXN3	Ataxin-3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	50.564	49.605	3	1.4448E-05	42849	160511_QHF_FH_JSI11i_2	76.704	61.614			1.37	1.3876	46.283	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.1229	29.934	2	2	Median	0.49673	0.55047	NaN	1	1	Median	99914000	53923000	45991000	0	0	0	16033000	16033000	0	49615000	22272000	27343000	34266000	15618000	18648000	38712	1820	36426	237340;237341;237342;237343;237344	318671;318672;318673;318674;318675;318676;318677;318678	318676			8	
NISSAQIVGPGPKPEASAK	2	Unmodified	1849.9898	0.98977625	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.29	2	8	4					2		3	3	6	4	39.536	37.696	3	6.8636E-05	31907	160511_QHF_FH_JSI12i_3	85.231	81.129			0.92058	0.94507	88.781	16	16	Median	0.56772	0.47613	108.19	3	3	Median	2.4131	2.8082	116.32	3	3	Median	0.91218	0.88488	73.867	6	6	Median	0.99814	1.1039	100.22	4	4	Median	1629200000	805800000	823410000	198850000	96385000	102460000	305790000	153630000	152160000	644050000	323560000	320490000	480520000	232230000	248290000	38713	1813	36427	237345;237346;237347;237348;237349;237350;237351;237352;237353;237354;237355;237356;237357;237358;237359;237360	318679;318680;318681;318682;318683;318684;318685;318686;318687;318688;318689;318690;318691;318692;318693;318694;318695	318694			17	
NITDISQK	1	Unmodified	917.48181	0.48181054	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	61.929	61.28	2	0.011039	52254	160511_QHF_FH_JSI12i_1	54.549	7.4824			1.1402	1.1342	12.682	5	0	Median	1.3015	1.0724	NaN	1	0	Median	0.95934	1.1342	NaN	1	0	Median	1.3639	1.3271	NaN	1	0	Median	1.0293	1.0638	16.871	2	0	Median	283730000	130300000	153430000	112030000	50233000	61792000	16199000	10020000	6178900	14649000	5456900	9191800	140860000	64587000	76272000	38714	1543	36428	237361;237362;237363;237364;237365	318696;318697;318698	318696			3	
NITGTDDQVQQAMNSLK	1	Unmodified	1861.884	0.88399055	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	66.721	66.179	2	2.5959E-12	58834	160511_QHF_FH_JSI9i_1	180.11	146.7			0.88713	0.94889	36.766	7	7	Median	0.73082	0.59732	NaN	1	1	Median	0.93075	1.0991	55.318	2	2	Median	1.0536	1.0099	30.048	2	2	Median	1.115	1.1653	29.05	2	2	Median	411970000	202310000	209670000	73234000	39570000	33664000	104620000	54044000	50574000	118500000	52889000	65609000	115620000	55804000	59819000	38715	4202	36429	237366;237367;237368;237369;237370;237371;237372	318699;318700;318701;318702;318703;318704;318705	318705			7	
NITHFGPTTLR	0	Unmodified	1255.6673	0.6673199	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.75	0.433		1	3							1	2		1	40.74	39.84	2	0.0042661	35144	160511_QHF_FH_JSI10i_2	75.294	46.207			0.43065	0.52047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43065	0.52047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26240000	16123000	10116000	5757500	0	5757500	14894000	10536000	4358700	0	0	0	5587600	5587600	0	38716	4460	36430	237373;237374;237375;237376	318706;318707;318708;318709	318708			4	
NITLDDASAPR	0	Unmodified	1171.5833	0.5833155	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.31	5					2	3			2	3	3	2	40.699	35.438	2	9.1132E-05	31992	160511_QHF_FH_JSI11i_1	88.681	64.526			0.87039	0.93993	24.788	10	6	Median	1.2682	1.043	58.956	2	2	Median	0.62052	0.72419	24.288	3	2	Plateau	0.98037	0.9347	10.288	3	1	Median	0.78325	0.84819	15.314	2	1	Median	1869900000	848200000	1021700000	632780000	231720000	401060000	369660000	187340000	182310000	467820000	231200000	236620000	399600000	197930000	201670000	38717	543	36431	237377;237378;237379;237380;237381;237382;237383;237384;237385;237386	318710;318711;318712;318713;318714;318715;318716;318717;318718;318719;318720;318721	318711			11	
NITLLNGVAIIVGTIIGSGIFVTPTGVLK	1	Unmodified	2879.71	0.70996657	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	3.34			3	12	4	1	7	3	17	5	16	14	12	106.69	98.198	2;3;4	2.1058E-255	59809	160513_QHF_FH_JSI10Kac_6	234.48	229.2			0.39562	0.33889	148.4	27	22	Median	0.91413	0.79588	55.802	5	4	Median	0.68268	0.80235	156.48	8	5	Median	0.30532	0.29595	165.73	9	8	Median	0.09544	0.10106	151.35	5	5	Median	3282400000	2088900000	1193500000	418340000	199730000	218610000	2095200000	1521600000	573640000	502990000	211520000	291470000	265880000	156070000	109820000	38718	2172	36432	237387;237388;237389;237390;237391;237392;237393;237394;237395;237396;237397;237398;237399;237400;237401;237402;237403;237404;237405;237406;237407;237408;237409;237410;237411;237412;237413;237414;237415;237416;237417;237418;237419;237420;237421;237422;237423;237424;237425;237426;237427;237428;237429;237430;237431;237432;237433	318722;318723;318724;318725;318726;318727;318728;318729;318730;318731;318732;318733;318734;318735;318736;318737;318738;318739;318740;318741;318742;318743;318744;318745;318746;318747;318748;318749;318750;318751;318752;318753;318754;318755;318756;318757;318758;318759;318760;318761;318762;318763;318764;318765;318766;318767;318768;318769;318770;318771;318772;318773;318774;318775;318776;318777	318773			55	
NITLNFGPQHPAAHGVLR	0	Unmodified	1941.0333	0.033312819	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	9.5	6.5			5						5	3	4	1	2	60.898	55.742	3;4	2.7519E-07	47051	160511_QHF_FH_JSI10i_3	109.35	98.491			0.9534	1.0245	17.199	10	1	Median	1.1146	0.92886	23.398	3	0	Median	0.90651	1.057	6.7329	4	1	Median	1.1366	1.121	NaN	1	0	Median	0.99199	1.0595	19.825	2	0	Median	487130000	249340000	237790000	187140000	87509000	99633000	235600000	128360000	107240000	13398000	7148800	6249600	50996000	26323000	24674000	38719	497	36433	237434;237435;237436;237437;237438;237439;237440;237441;237442;237443	318778;318779;318780;318781;318782;318783;318784;318785;318786	318779			8	
NITLPHLESQSLSIQWVYNILDK	1	Unmodified	2710.433	0.43301644	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.898	91.178	3	2.7129E-05	52947	160513_QHF_FH_JSI10Kac_6	64.013	44.969			0.69617	0.82743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69617	0.82743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207250000	110450000	96805000	0	0	0	207250000	110450000	96805000	0	0	0	0	0	0	38720	4003	36434	237444	318787	318787			1	
NITLSLVANPSHLEAADPVVMGK	1	Unmodified	2375.2519	0.25188095	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	90.973	90.373	3	2.0921E-12	79318	160511_QHF_FH_JSI9i_2	119.41	89.969			0.97476	1.0483	51.822	6	6	Median	1.8628	1.5515	NaN	1	1	Median	0.41682	0.50982	NaN	1	1	Median	0.93575	0.9366	68.054	2	2	Median	0.97476	1.0483	48.168	2	2	Median	273540000	145870000	127670000	35287000	12135000	23152000	38764000	27938000	10827000	113490000	61111000	52383000	85993000	44686000	41307000	38721	2185	36435	237445;237446;237447;237448;237449;237450	318788;318789;318790;318791;318792;318793;318794	318790			7	
NITQTLMDTLK	1	Unmodified	1276.6697	0.66968766	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		79.844	79.161	2	0.00019404	69628	160511_QHF_FH_JSI9i_2	91.855	65.34			0.16668	0.18344	84.868	4	4	Linear	1.2269	1.0568	111.57	2	2	Median	0.27542	0.33687	NaN	1	1	Median	0.57251	0.56578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140300000	81035000	59266000	57416000	30034000	27381000	38658000	29282000	9376300	44227000	21719000	22508000	0	0	0	38722	4678	36436	237451;237452;237453;237454	318795;318796;318797;318798;318799	318795			5	
NITRPFEDQTSLEFFSK	1	Unmodified	2058.0058	0.0058202445	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	79.47	79.349	3	0.00025299	70844	160511_QHF_FH_JSI11i_3	73.918	59.445			0.60811	0.58932	1.6967	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61565	0.58229	NaN	1	1	Median	0.60067	0.59643	NaN	1	1	Median	208740000	126190000	82557000	0	0	0	0	0	0	131820000	82347000	49469000	76929000	43841000	33087000	38723	4762	36437	237455;237456	318800;318801	318800			2	
NITVIFHPLLR	0	Unmodified	1321.787	0.7870411	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	1	3	2	82.118	75.48	2;3	2.0451E-05	40188	160513_QHF_FH_JSI11Kac_6	82.505	75.303			0.13191	0.12245	61.458	4	4	Median	0.15951	0.14109	NaN	1	1	Median	0.070102	0.081982	NaN	1	1	Median	0.10909	0.10628	NaN	1	1	Median	0.32048	0.3371	NaN	1	1	Median	425010000	342670000	82341000	115020000	114690000	329360	174300000	165280000	9016100	93688000	28780000	64907000	42009000	33920000	8088200	38724	3962	36438	237457;237458;237459;237460;237461;237462;237463;237464	318802;318803;318804;318805;318806;318807;318808;318809	318804			8	
NITVLFLHSNK	1	Unmodified	1284.719	0.71902112	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	2	2	70.392	64.295	3	0.00082943	33705	160513_QHF_FH_JSI12Kac_6	68.809	53.607			0.1909	0.17283	250.91	6	5	Median	0.23518	0.20143	NaN	1	1	Median	0.66436	0.78996	529.68	2	1	Median	0.15496	0.14829	NaN	1	1	Median	0.24426	0.24523	91.699	2	2	Median	373140000	276740000	96394000	55233000	47844000	7388700	135060000	72923000	62135000	93940000	82487000	11454000	88905000	73489000	15416000	38725	4226	36439	237465;237466;237467;237468;237469;237470;237471	318810;318811;318812;318813;318814;318815;318816	318814			7	
NITVREEEK	1	Unmodified	1116.5775	0.57750184	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	11.676	11.136	3	0.018067	8953	160511_QHF_FH_JSI9i_2	43.282	23.075			2.1164	2.125	63.434	4	4	Median	1.321	1.1618	88.721	2	2	Median	NaN	NaN	NaN	0	0	Median	2.3646	2.3493	NaN	1	1	Median	1.8943	2.0754	NaN	1	1	Median	270550000	96339000	174210000	103200000	38542000	64656000	0	0	0	87277000	23681000	63596000	80071000	34116000	45955000	38726	552	36440	237472;237473;237474;237475	318817;318818;318819;318820	318819			4	
NITYEELR	0	Unmodified	1036.5189	0.51892433	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.369	36.018	2	0.0068347	30632	160511_QHF_FH_JSI12i_2	70.525	36.974			0.53136	0.58342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53136	0.58342	NaN	1	1	Median	181210000	101480000	79738000	0	0	0	0	0	0	0	0	0	181210000	101480000	79738000	38727	5090	36441	237476	318821	318821			1	
NITYLPAGQSVLLQLPQ	0	Unmodified	1854.0251	0.025099124	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.68	101.58	2;3	4.3234E-30	89711	160511_QHF_FH_JSI9i_1	183.79	164.65			0.90281	0.91874	16.746	8	0	Median	1.1788	0.97215	21.825	2	0	Median	0.68689	0.80781	30.735	2	0	Median	0.86405	0.85831	8.3067	2	0	Median	0.91712	0.95229	3.7578	2	0	Median	2379200000	1221900000	1157400000	462220000	192760000	269460000	694300000	375850000	318450000	555200000	302780000	252410000	667530000	350480000	317050000	38728	1424	36442	237477;237478;237479;237480;237481;237482;237483;237484	318822;318823;318824;318825;318826;318827;318828;318829;318830;318831;318832;318833	318832			12	
NIVAAMK	1	Unmodified	745.41565	0.41564523	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	3	1	25.974	25.318	2	0.017405	21243	160511_QHF_FH_JSI11i_2	62.714	35.594			0.62244	0.6932	288.08	6	6	Median	0.044543	0.037812	NaN	1	1	Median	0.1253	0.15586	NaN	1	1	Median	0.36821	3.083	245.94	3	3	Plateau	47.381	52.312	NaN	1	1	Median	1401500000	837270000	564210000	160320000	150470000	9854400	215510000	177820000	37690000	847330000	504740000	342590000	178320000	4248600	174070000	38729	1334	36443	237485;237486;237487;237488;237489;237490;237491	318834;318835;318836;318837;318838;318839;318840	318838			7	
NIVAAMK	1	Oxidation (M)	761.41056	0.41055985	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	1	0			By MS/MS		14	0							1					1		16.145	8.5246	2	0.040624	6875	160513_QHF_FH_JSI11Kac_4	51.456	32.096			0.7331	0.71472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7331	0.71472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5897000	3322800	2574300	0	0	0	0	0	0	5897000	3322800	2574300	0	0	0	38730	1334	36443	237492	318841	318841			1	
NIVDTEAK	1	Unmodified	888.45526	0.45526144	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	14.972	14.727	2	0.01368	12461	160511_QHF_FH_JSI12i_1	51.193	15.574			0.89594	1.0656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89594	1.0656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67916000	33442000	34474000	0	0	0	67916000	33442000	34474000	0	0	0	0	0	0	38731	416	36444	237493;237494	318842;318843	318842			2	
NIVEAAAVR	0	Unmodified	941.52943	0.52942943	2027	P62854;Q5JNZ5	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.49	6.4	6	8	6			4	5	6	6	8	11	10	12	35.202	29.972	2	0.0002085	17094	160513_QHF_FH_JSI11Kac_5	93.178	34.261			0.86848	0.74387	99.084	41	40	Median	1.3707	1.1745	98.73	8	8	Median	0.35939	0.42445	112.49	11	11	Median	1.2229	1.1872	100.05	10	9	Median	0.93427	0.98278	97.49	12	12	Median	23576000000	12540000000	11036000000	4218200000	1937300000	2280900000	5982400000	3348800000	2633600000	8331900000	4732200000	3599700000	5044000000	2522000000	2522000000	38732	2027	36445	237495;237496;237497;237498;237499;237500;237501;237502;237503;237504;237505;237506;237507;237508;237509;237510;237511;237512;237513;237514;237515;237516;237517;237518;237519;237520;237521;237522;237523;237524;237525;237526;237527;237528;237529;237530;237531;237532;237533;237534;237535	318844;318845;318846;318847;318848;318849;318850;318851;318852;318853;318854;318855;318856;318857;318858;318859;318860;318861;318862;318863;318864;318865;318866;318867;318868;318869;318870;318871;318872;318873;318874;318875;318876;318877;318878;318879;318880;318881;318882;318883;318884;318885	318874			42	
NIVHNYSEAEIK	1	Unmodified	1415.7045	0.70449327	5727	Q9Y6I3;Q9H201	EPN1;EPN3	Epsin-1;Epsin-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	4	2	31.186	30.375	2;3	6.78E-05	26627	160511_QHF_FH_JSI10i_2	106.29	82.862			1.2656	1.143	93.175	10	10	Median	1.3839	1.1492	14.475	2	2	Median	0.34705	0.43082	36.057	2	2	Median	1.0568	1.0457	134.19	4	4	Median	1.6281	1.7936	24.464	2	2	Median	657810000	315750000	342070000	93872000	34350000	59522000	119170000	70902000	48271000	388570000	186860000	201710000	56194000	23631000	32563000	38733	5727	36446	237536;237537;237538;237539;237540;237541;237542;237543;237544;237545	318886;318887;318888;318889;318890;318891;318892;318893;318894;318895	318895			10	
NIVLSGGSTMFR	0	Unmodified	1280.6547	0.6547063	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.15		2	1					2	5	2	2	3	3	69.589	62.08	2	0.0004121	54090	160511_QHF_FH_JSI11i_2	87.942	72.571			1.0891	1.1058	38.114	8	7	Median	1.2415	1.0442	14	2	1	Median	1.0396	1.2218	NaN	1	1	Median	1.5701	1.6273	59.58	3	3	Median	0.82461	0.89142	24.585	2	2	Median	746410000	374950000	371460000	27450000	12471000	14979000	1691600	802980	888570	469770000	226470000	243300000	247490000	135200000	112290000	38734	1939	36447	237546;237547;237548;237549;237550;237551;237552;237553;237554;237555	318896;318897;318898;318899;318900;318901;318902;318903;318904;318905	318901			10	
NIVLSGGSTMFR	0	Oxidation (M)	1296.6496	0.64962092	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				57.451	48.276	2	0.0052023	25647	160513_QHF_FH_JSI9Kac_6	57.785	32.547			0.70632	0.61348	NaN	1	0	Median	0.70632	0.61348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10126000	6256700	3869600	10126000	6256700	3869600	0	0	0	0	0	0	0	0	0	38735	1939	36447	237556	318906	318906		1603	1	
NIVPGWLQR	0	Unmodified	1081.6033	0.60326308	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		67.071	66.304	2	0.0021594	57800	160511_QHF_FH_JSI11i_2	75.109	59.447			1.2075	1.4164	14.047	3	3	Median	1.8906	1.5978	NaN	1	1	Median	1.1292	1.4164	NaN	1	1	Median	1.2075	1.2075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	236530000	92416000	144110000	71795000	29014000	42781000	97240000	40101000	57139000	67491000	23300000	44190000	0	0	0	38736	1684	36448	237557;237558;237559	318907;318908;318909	318908			3	
NIVQNYR	0	Unmodified	905.47191	0.47191456	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		18.105	17.593	2	0.045521	14921	160511_QHF_FH_JSI10i_2	48.504	17.785			0.64023	0.70785	4.4388	2	1	Median	NaN	NaN	NaN	0	0	Median	0.55526	0.68598	NaN	1	1	Median	0.7382	0.73042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128310000	67589000	60719000	0	0	0	47522000	29633000	17889000	80787000	37956000	42830000	0	0	0	38737	4503	36449	237560;237561	318910;318911	318911			2	
NIVSAFGIIPR	0	Unmodified	1185.687	0.68699271	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9	7		1							1		1		1	82.15	76.557	2	0.001198	72797	160511_QHF_FH_JSI12i_2	70.056	42.314			0.80722	0.95232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80722	0.95232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46742000	22124000	24617000	0	0	0	46742000	22124000	24617000	0	0	0	0	0	0	38738	4202	36450	237562;237563	318912;318913	318912			2	
NIVSLLLSMLGHDEDNTR	0	Unmodified	2026.0153	0.015339073	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	99.299	91.405	2;3	2.5686E-06	54752	160513_QHF_FH_JSI10Kac_6	99.508	88.654			0.32569	0.37917	174.29	5	4	Median	4.3378	3.7428	NaN	1	1	Median	0.16949	0.19923	91.009	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2509	1.323	214.04	2	2	Median	908390000	628690000	279710000	236440000	65553000	170880000	480240000	445280000	34962000	0	0	0	191720000	117850000	73861000	38739	3860	36451	237564;237565;237566;237567;237568	318914;318915;318916;318917;318918	318917			5	
NIVSLLLSMLGHDEDNTR	0	Oxidation (M)	2042.0103	0.010253695	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			95.039	89.318	3	0.027141	51473	160513_QHF_FH_JSI10Kac_6	37.4	21.634			0.2905	0.34479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.2905	0.34479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37999000	27157000	10842000	0	0	0	37999000	27157000	10842000	0	0	0	0	0	0	38740	3860	36451	237569	318919	318919			1	
NIVVDDITEQKPEPQDDGK	2	Unmodified	2139.0332	0.033157207	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.189	51.693	3	2.5368E-06	47014	160511_QHF_FH_JSI12i_1	94.856	86.568			0.51628	0.59696	37.036	3	2	Median	NaN	NaN	NaN	0	0	Median	0.51628	0.59696	NaN	1	1	Median	0.42878	0.42036	NaN	1	1	Median	0.85875	0.88138	NaN	1	0	Median	336970000	210190000	126780000	0	0	0	99056000	60737000	38319000	103980000	60823000	43153000	133940000	88634000	45309000	38741	5639	36452	237570;237571;237572	318920;318921;318922;318923	318922			4	
NIWIPMK	1	Unmodified	900.48914	0.48914452	1877	P56378	MP68	6.8 kDa mitochondrial proteolipid	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	65.376	64.475	2	0.017405	55972	160511_QHF_FH_JSI11i_2	62.714	42.432			0.79788	0.95214	30.523	4	1	Median	1.5433	1.2928	NaN	1	0	Median	0.86078	1.066	NaN	1	0	Median	0.62792	0.63603	NaN	1	1	Median	0.73958	0.85045	NaN	1	0	Median	366910000	178940000	187970000	74207000	20958000	53249000	101790000	44857000	56936000	123970000	68286000	55689000	66933000	44838000	22095000	38742	1877	36453	237573;237574;237575;237576	318924;318925;318926;318927	318926			4	
NIWLETHIWHAK	1	Unmodified	1546.8045	0.80448208	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	72.565	64.075	4	3.3623E-06	34948	160513_QHF_FH_JSI10Kac_6	83.314	71.943			0.63825	0.73207	7.0637	2	0	Median	NaN	NaN	NaN	0	0	Median	0.58068	0.6964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70152	0.76956	NaN	1	0	Median	42205000	22668000	19537000	0	0	0	31456000	16807000	14649000	0	0	0	10749000	5861000	4888300	38743	4288	36454	237577;237578	318928;318929;318930;318931	318931			4	
NIWVSGLSSNTK	1	Unmodified	1304.6725	0.67246486	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.854	54.902	2	0.00011753	48569	160511_QHF_FH_JSI10i_2	102.53	83.786			1.535	1.5187	42.56	4	4	Median	1.6622	1.4638	NaN	1	1	Median	0.69803	0.86407	NaN	1	1	Median	2.3403	2.4396	NaN	1	1	Median	1.4174	1.5756	NaN	1	1	Median	224730000	102360000	122370000	32490000	10418000	22071000	59614000	26816000	32798000	77211000	35255000	41957000	55411000	29870000	25542000	38744	5066	36455	237579;237580;237581;237582	318932;318933;318934;318935	318935			4	
NIYAFMGTPVQK	1	Unmodified	1367.6908	0.69075746	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	69.635	68.715	2	4.1841E-05	61130	160511_QHF_FH_JSI10i_2	87.298	68.027			1.0405	1.1531	94.906	5	4	Median	NaN	NaN	NaN	0	0	Median	1.0405	1.3288	NaN	1	1	Median	0.52613	0.52887	130.65	2	2	Median	0.48655	0.52863	110.3	2	1	Median	164570000	106350000	58222000	0	0	0	13516000	6799200	6717200	88000000	57437000	30563000	63056000	42114000	20942000	38745	1576	36456	237583;237584;237585;237586;237587;237588	318936;318937;318938;318939;318940;318941	318941			6	
NIYGNIEDLVVHIK	1	Unmodified	1625.8777	0.8777066	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.81	95.488	3	3.7827E-05	82692	160511_QHF_FH_JSI12i_2	95.631	80.086			0.89253	0.97871	7.6973	4	0	Median	1.0729	0.91596	NaN	1	0	Median	0.86694	1.0458	NaN	1	0	Median	0.87472	0.91474	NaN	1	0	Median	0.91071	1.046	NaN	1	0	Median	180870000	85242000	95629000	21389000	9878200	11511000	26607000	13065000	13541000	78357000	37616000	40741000	54518000	24682000	29836000	38746	93	36457	237589;237590;237591;237592	318942;318943;318944;318945;318946;318947;318948;318949;318950;318951;318952;318953	318945			12	
NIYSEELR	0	Unmodified	1022.5033	0.50327426	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.14	3	4	1				1	1		4	2	2	2	33.562	30.704	2	0.0010799	27203	160511_QHF_FH_JSI10i_2	94.302	69.38			0.42872	0.44043	53.103	9	3	Median	0.30781	0.26199	33.294	3	0	Plateau	0.35122	0.42498	86.068	2	1	Median	0.74644	0.74283	73.924	2	1	Median	0.42568	0.45768	12.945	2	1	Median	2934200000	1893500000	1040700000	580430000	346380000	234060000	496020000	362490000	133530000	1162000000	749740000	412230000	695810000	434880000	260930000	38747	791	36458	237593;237594;237595;237596;237597;237598;237599;237600;237601;237602	318954;318955;318956;318957;318958;318959;318960;318961;318962;318963;318964;318965;318966;318967;318968	318968			15	
NIYSEELRETK	1	Unmodified	1380.6885	0.68850885	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.96	5.44		15	5					1	4	7	3	7	8	31.069	28.593	2;3	0.00012221	24793	160511_QHF_FH_JSI10i_2	113.69	93.48			1.1868	1.0133	89.828	25	22	Median	1.1868	1.0133	67.621	7	5	Median	1.6109	2.0007	107.42	3	3	Median	0.95376	0.9191	99.954	7	6	Median	0.95207	0.98791	108.56	8	8	Median	12449000000	6700200000	5748800000	2185800000	979070000	1206700000	2816200000	1629300000	1187000000	4304700000	2331100000	1973600000	3142300000	1760800000	1381500000	38748	791	36459	237603;237604;237605;237606;237607;237608;237609;237610;237611;237612;237613;237614;237615;237616;237617;237618;237619;237620;237621;237622;237623;237624;237625;237626;237627	318969;318970;318971;318972;318973;318974;318975;318976;318977;318978;318979;318980;318981;318982;318983;318984;318985;318986;318987;318988;318989;318990;318991;318992;318993;318994;318995;318996;318997;318998;318999	318991			31	
NIYVLQELDNPGAK	1	Unmodified	1572.8148	0.814772	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.56	8	16	3					8		3	9	12	11	78.39	75.195	2;3	4.4463E-17	69610	160511_QHF_FH_JSI10i_1	132.17	112.86			3.2358	3.4606	283.25	24	24	Median	29.761	25.238	408.92	3	3	Median	7.9694	9.1068	292.89	7	7	Median	1.0865	1.0454	304.37	7	7	Median	1.3138	1.3151	265.31	7	7	Median	2913200000	1320900000	1592300000	421690000	171960000	249740000	601820000	318610000	283210000	1165300000	504940000	660350000	724390000	325430000	398960000	38749	1023	36460	237628;237629;237630;237631;237632;237633;237634;237635;237636;237637;237638;237639;237640;237641;237642;237643;237644;237645;237646;237647;237648;237649;237650;237651;237652;237653;237654;237655;237656;237657;237658;237659;237660;237661;237662	319000;319001;319002;319003;319004;319005;319006;319007;319008;319009;319010;319011;319012;319013;319014;319015;319016;319017;319018;319019;319020;319021;319022;319023;319024;319025;319026;319027;319028;319029;319030;319031;319032;319033;319034;319035;319036;319037;319038;319039;319040;319041;319042;319043	319018			44	
NIYYLCAPNR	0	Unmodified	1282.6128	0.61284149	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.83	1	4					1	1	3	2	3	2	3	55.281	49.779	2	1.0983E-05	26873	160513_QHF_FH_JSI11Kac_6	106.36	86.027			0.75105	0.66097	62.36	10	8	Median	0.76817	0.66097	5.9935	2	1	Median	1.1953	1.3961	91.053	3	2	Median	0.6045	0.59764	2.0266	2	2	Median	0.76362	0.84832	75.718	3	3	Median	585840000	268640000	317200000	80478000	42504000	37974000	145500000	72752000	72747000	26937000	14591000	12345000	332930000	138790000	194130000	38750	2328	36461	237663;237664;237665;237666;237667;237668;237669;237670;237671;237672	319044;319045;319046;319047;319048;319049;319050;319051;319052;319053;319054	319047			11	
NKEDQYDHLDAADMTK	2	Unmodified	1892.8211	0.82105594	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		12	3							2	3	4	6	32.844	32.098	3;4	9.2015E-06	27568	160511_QHF_FH_JSI12i_2	113.47	103.94			1.0836	1.0875	41.453	13	1	Median	1.3361	1.1477	26.099	2	0	Median	0.99794	1.2213	16.407	2	0	Median	1.0971	1.0915	20.419	4	0	Linear	1.5196	1.7145	41.317	5	1	Median	1464700000	715630000	749060000	202340000	92273000	110060000	314490000	161620000	152860000	457340000	236300000	221040000	490520000	225430000	265090000	38751	1417	36462	237673;237674;237675;237676;237677;237678;237679;237680;237681;237682;237683;237684;237685;237686;237687	319055;319056;319057;319058;319059;319060;319061;319062;319063;319064;319065;319066;319067;319068;319069;319070;319071;319072;319073;319074;319075;319076;319077;319078;319079;319080	319059			25	
NKEEAAEYAK	2	Unmodified	1151.5459	0.54586736	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.37	8	13	7				1	2	1	4	7	12	9	8.9053	7.4708	2;3	0.00022066	6301	160511_QHF_FH_JSI10i_1	64.55	46.239			0.87298	0.85489	225.02	24	21	Median	22.497	18.768	291.68	3	3	Median	1.0739	1.2564	245.8	6	5	Median	0.87298	0.85489	210.17	8	6	Median	0.17262	0.18676	227.79	7	7	Median	13600000000	6605200000	6995200000	1872800000	464820000	1408000000	4080600000	2199400000	1881200000	5258100000	2271200000	2986900000	2388900000	1669700000	719150000	38752	2018	36463	237688;237689;237690;237691;237692;237693;237694;237695;237696;237697;237698;237699;237700;237701;237702;237703;237704;237705;237706;237707;237708;237709;237710;237711;237712;237713;237714;237715;237716;237717;237718;237719	319081;319082;319083;319084;319085;319086;319087;319088;319089;319090;319091;319092;319093;319094;319095;319096;319097;319098;319099;319100;319101;319102;319103;319104;319105;319106;319107;319108;319109;319110;319111;319112;319113	319094			33	
NKEEAAEYAKLLAK	3	Acetyl (K)	1618.8566	0.85663681	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		67.027	57.422	3	0.023195	31091	160513_QHF_FH_JSI11Kac_6	50.806	30.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7101300	7101300	0	0	0	0	0	0	0	7101300	7101300	0	0	0	0	38753	2018	36464	237720	319114	319114	2052		1	
NKEIFLR	1	Acetyl (K)	960.53927	0.53926584	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		58.944	47.996	2	0.016384	26259	160513_QHF_FH_JSI11Kac_5	84.916	47.357			0.035626	0.035049	101.67	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.035626	0.035049	101.67	2	2	Median	NaN	NaN	NaN	0	0	Median	38702000	37070000	1632100	0	0	0	0	0	0	38702000	37070000	1632100	0	0	0	38754	1057	36465	237721;237722	319115;319116	319116	893		2	
NKEPGAEEK	2	Unmodified	1000.4825	0.48253882	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	4	3	3	4.5949	4.2475	2;3	0.00033197	2183	160511_QHF_FH_JSI10i_2	65.278	33.784			0.78827	0.74581	36.677	8	4	Median	0.75454	0.63769	24.507	2	1	Median	1.1878	1.4547	55.275	3	1	Plateau	0.70007	0.70871	NaN	1	1	Median	0.77131	0.83682	18.643	2	1	Median	2007900000	1086500000	921440000	529630000	319900000	209730000	697170000	369790000	327390000	309270000	149780000	159490000	471820000	246980000	224840000	38755	1262	36466	237723;237724;237725;237726;237727;237728;237729;237730;237731;237732;237733;237734	319117;319118;319119;319120;319121;319122;319123;319124;319125;319126;319127	319125			11	
NKFDVDAADEK	2	Unmodified	1250.5779	0.57789577	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		3										1	2	21.747	20.855	2;3	0.002581	17226	160511_QHF_FH_JSI12i_2	94.692	67.438			1.8946	1.9413	34.276	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9398	1.9413	NaN	1	1	Median	1.1806	1.3015	35.835	2	2	Median	74568000	26678000	47889000	0	0	0	0	0	0	25424000	6302500	19122000	49143000	20376000	28767000	38756	4628	36467	237735;237736;237737	319128;319129;319130	319128			3	
NKFEEAER	1	Unmodified	1021.4829	0.48287317	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.22		8	4					2	1	2	2	6	5	8.8056	6.7093	2;3	0.0013046	5336	160511_QHF_FH_JSI12i_3	78.516	65.9			1.1118	1.1003	20.792	15	2	Median	1.4731	1.2611	28.874	2	1	Median	0.8709	1.0675	14.559	2	0	Median	1.1514	1.1083	7.1051	6	1	Median	1.0563	1.0538	29.909	5	0	Median	6174200000	2957800000	3216400000	577680000	247290000	330390000	1048000000	594680000	453280000	2567800000	1199200000	1368700000	1980700000	916680000	1064000000	38757	1050	36468	237738;237739;237740;237741;237742;237743;237744;237745;237746;237747;237748;237749;237750;237751;237752	319131;319132;319133;319134;319135;319136;319137;319138;319139;319140;319141;319142;319143;319144	319144			14	
NKFEEAER	1	Acetyl (K)	1063.4934	0.49343786	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	29.956	20.721	2	0.032129	13101	160513_QHF_FH_JSI12Kac_4	61.679	39.593			1.4585	1.5803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4585	1.5803	NaN	1	1	Median	4314700	2841100	1473600	0	0	0	0	0	0	0	0	0	4314700	2841100	1473600	38758	1050	36468	237753	319145	319145			1	
NKFGAPQK	2	Acetyl (K)	930.49232	0.49231565	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	27.976	19.939	2	0.020557	12176	160513_QHF_FH_JSI12Kac_4	67.032	34.562			19.917	21.514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19.917	21.514	NaN	1	1	Median	6495400	188160	6307200	0	0	0	0	0	0	0	0	0	6495400	188160	6307200	38759	1507	36469	237754	319146	319146	1533		1	
NKFLDQNLQK	2	Acetyl (K)	1288.6776	0.67755023	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	56.435	45.701	2	2.6078E-09	26339	160513_QHF_FH_JSI11Kac_4	131.62	97.444			0.0057835	0.0061956	10.603	2	2	Median	NaN	NaN	NaN	0	0	Median	0.0048922	0.005748	NaN	1	1	Median	0.0068371	0.006678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20763000	20683000	79728	0	0	0	5646300	5609100	37174	9463500	9420900	42554	5653300	5653300	0	38760	1085	36470	237755;237756;237757	319147;319148;319149	319148	942		3	
NKFNQVESDK	2	Acetyl (K)	1249.5939	0.59388018	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		35.906	27.089	2	0.051338	16003	160513_QHF_FH_JSI11Kac_3	42.718	31.566			0.63957	0.69319	131.44	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4751	1.7559	NaN	1	0	Median	0.27731	0.27365	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8497500	6505700	1991800	0	0	0	1969300	922760	1046500	6528300	5582900	945330	0	0	0	38761	2294	36471	237758;237759	319150	319150			1	
NKGDSHLNVQVSNFK	2	Unmodified	1685.8485	0.84853174	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		31.746	31.746	3	0.024896	27565	160511_QHF_FH_JSI11i_3	40.187	21.129			0.16699	0.15805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16699	0.15805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30950000	27524000	3426500	0	0	0	0	0	0	30950000	27524000	3426500	0	0	0	38762	3323	36472	237760	319151	319151			1	
NKHEAMITDLEER	1	Unmodified	1584.7566	0.75660519	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.747	30.747	3	0.001608	26592	160511_QHF_FH_JSI11i_3	46.408	42.166			0.58879	0.54641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58879	0.54641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38534000	23411000	15123000	0	0	0	0	0	0	38534000	23411000	15123000	0	0	0	38763	1436	36473	237761	319152	319152			1	
NKHEAMITDLEER	1	Acetyl (K)	1626.7672	0.76716988	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								3			2	1		53.254	42.69	3	0.00092632	23638	160513_QHF_FH_JSI11Kac_5	62.357	49.997			0.24977	0.26684	54.085	2	1	Median	NaN	NaN	NaN	0	0	Median	0.16012	0.18204	NaN	1	1	Median	0.38961	0.39115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13682000	7596800	6085600	0	0	0	5535600	1764700	3770900	8146800	5832100	2314700	0	0	0	38764	1436	36473	237762;237763;237764	319153;319154;319155	319153	1410		3	
NKHEAMITDLEER	1	Acetyl (K);Oxidation (M)	1642.7621	0.7620845	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		42.06	31.846	3	0.0036048	18175	160513_QHF_FH_JSI11Kac_5	57.136	43.457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2962700	2962700	0	0	0	0	0	0	0	2962700	2962700	0	0	0	0	38765	1436	36473	237765	319156	319156	1410	1098	1	
NKLDFLRPYTVPNK	2	Unmodified	1703.9359	0.93589019	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			3								1	2		57.798	57.288	3;4	0.0010387	48394	160511_QHF_FH_JSI10i_3	64.104	51.477			0.94642	0.87164	3.1959	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.71792	0.81874	NaN	1	1	Median	0.9314	0.86289	1.4271	2	0	Median	NaN	NaN	NaN	0	0	Median	264160000	153720000	110440000	0	0	0	48019000	27698000	20322000	216140000	126020000	90122000	0	0	0	38766	4267	36474	237766;237767;237768	319157;319158;319159;319160	319160			4	
NKLDHYAIIK	2	Unmodified	1213.6819	0.68190733	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	3.41		2	11						1	1	3	4	6	30.414	29.398	2;3;4	1.0082E-05	25048	160511_QHF_FH_JSI11i_3	83.397	67.143			1.3755	1.3508	119.99	14	10	Median	1.2249	1.0312	NaN	1	1	Median	0.91323	1.1365	87.298	3	2	Median	1.6341	1.5459	197.53	4	2	Median	1.6339	1.7288	102.92	6	5	Median	4572100000	2075400000	2496700000	61524000	31377000	30147000	461400000	220480000	240920000	1277000000	602460000	674580000	2772100000	1221000000	1551100000	38767	2017	36475	237769;237770;237771;237772;237773;237774;237775;237776;237777;237778;237779;237780;237781;237782	319161;319162;319163;319164;319165;319166;319167;319168;319169;319170;319171;319172;319173;319174;319175;319176;319177;319178;319179	319162			19	
NKLDHYAIIK	2	Acetyl (K)	1255.6925	0.69247202	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		58.817	48.064	3	0.0010298	24435	160513_QHF_FH_JSI10Kac_5	66.262	47.131			0.65639	0.7112	112.43	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3369	1.5749	NaN	1	0	Median	0.32226	0.32118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36804000	22610000	14195000	0	0	0	13855000	7897800	5957200	22949000	14712000	8237300	0	0	0	38768	2017	36475	237783;237784	319180;319181;319182	319182	2049;2050		3	
NKMMVCQVGGIEALVRTVLRAGDR	1	2 Oxidation (M)	2704.3935	0.39349336	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	2	3		By MS/MS			16	0									1		1			104.25	98.525	2	0.053934	58310	160513_QHF_FH_JSI10Kac_6	30.133	8.6755			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38769	1422	36476	237785	319183	319183			1	
NKPEWFFK	2	Unmodified	1094.5549	0.5549159	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	3	3	4	52.663	49.062	2;3	0.00017568	41390	160511_QHF_FH_JSI12i_3	99.442	86.405			0.94733	0.99061	47.656	12	2	Median	0.92093	0.78408	5.0886	2	0	Median	1.0462	1.2423	82.327	3	2	Median	0.93554	1.0519	36.008	3	0	Plateau	0.98529	1.0548	13.129	4	0	Median	2939500000	1342700000	1596800000	126940000	64101000	62835000	264160000	124670000	139490000	846880000	359100000	487780000	1701500000	794850000	906670000	38770	2093	36477	237786;237787;237788;237789;237790;237791;237792;237793;237794;237795;237796;237797	319184;319185;319186;319187;319188;319189;319190;319191;319192;319193;319194;319195;319196;319197;319198;319199;319200;319201;319202;319203;319204;319205	319199			22	
NKPEWFFK	2	Acetyl (K)	1136.5655	0.56548059	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	76.923	67.54	2	0.041516	36862	160513_QHF_FH_JSI11Kac_6	51.059	26.904			0.44153	0.45573	65.607	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2985	0.28657	NaN	1	0	Median	0.6531	0.72473	NaN	1	0	Median	37607000	29803000	7803800	0	0	0	0	0	0	27312000	22945000	4366800	10295000	6857800	3436900	38771	2093	36477	237798;237799	319206	319206			1	
NKPEWFFKK	3	Unmodified	1222.6499	0.64987892	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	38.244	37.878	3;4	0.0022908	32913	160511_QHF_FH_JSI11i_3	53.756	46.111			1.2365	1.173	19.248	5	2	Median	NaN	NaN	NaN	0	0	Median	0.8144	0.91707	NaN	1	1	Median	1.39	1.3206	16.762	2	1	Median	1.1962	1.2157	17.216	2	0	Median	337040000	179090000	157940000	0	0	0	31244000	18612000	12632000	91989000	46035000	45954000	213800000	114440000	99358000	38772	2093	36478	237800;237801;237802;237803;237804	319207;319208;319209;319210;319211;319212;319213;319214;319215	319207			9	
NKPGPNIESGNEDDDASFK	2	Unmodified	2032.8974	0.89739201	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.799	6	4	3							2	3	4	4	30.887	30.345	2;3	2.5866E-14	26209	160511_QHF_FH_JSI9i_2	121.26	106.79			0.8292	0.77963	30.416	12	3	Median	0.83794	0.69484	12.398	2	0	Median	0.55403	0.67247	0.28773	2	0	Median	0.79075	0.78123	26.14	4	2	Median	0.88078	0.95022	34.418	4	1	Median	1214200000	649530000	564710000	183800000	97329000	86466000	274760000	159840000	114920000	392550000	216500000	176050000	363130000	175860000	187270000	38773	454	36479	237805;237806;237807;237808;237809;237810;237811;237812;237813;237814;237815;237816;237817	319216;319217;319218;319219;319220;319221;319222;319223;319224;319225;319226;319227;319228;319229;319230;319231;319232;319233;319234;319235;319236	319230			21	
NKPGPYSSVPPPSAPPPK	2	Unmodified	1815.9519	0.95193418	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	31.636	31.01	3	3.0631E-05	26768	160511_QHF_FH_JSI11i_3	79.837	74.781			0.99804	0.9329	16.937	6	1	Median	0.9864	0.83828	NaN	1	0	Median	0.73816	0.9164	NaN	1	0	Median	1.1564	1.1094	21.978	2	0	Median	0.97204	1.0188	18.495	2	1	Median	402000000	212920000	189080000	51846000	27079000	24766000	60858000	31040000	29818000	147410000	75129000	72282000	141880000	79671000	62209000	38774	2586	36480	237818;237819;237820;237821;237822;237823;237824	319237;319238;319239;319240;319241;319242;319243;319244;319245	319237			9	
NKPGPYSSVPPPSAPPPKK	3	Unmodified	1944.0469	0.046897198	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		25.61	24.854	3;4	1.991E-05	21345	160511_QHF_FH_JSI11i_3	75.97	71.353			0.84401	0.86593	26.779	7	1	Median	1.0394	0.83684	10.542	2	0	Median	0.8021	0.92763	5.7569	2	0	Median	0.92612	0.86368	32.01	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1265300000	650080000	615190000	230100000	93078000	137020000	359370000	203290000	156080000	675810000	353720000	322090000	0	0	0	38775	2586	36481	237825;237826;237827;237828;237829;237830;237831	319246;319247;319248;319249;319250;319251;319252;319253;319254;319255;319256;319257	319249			12	
NKPGVYTK	2	Unmodified	905.49707	0.49706667	47	CON__P00761;CON__P07477;P07477;Q9BYE2	PRSS1;TMPRSS13	Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2;Transmembrane protease serine 13	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	2	1	1	6.8516	6.5522	2;3	0.0033613	4293	160511_QHF_FH_JSI11i_3	53.327	42.454		+	0.99204	0.93911	139.04	5	1	Median	0.78451	0.62919	NaN	1	0	Median	1.1795	1.3436	0.64265	2	0	Median	0.99204	0.93911	NaN	1	0	Median	0.046884	0.049144	NaN	1	1	Median	6417500000	4233000000	2184500000	266140000	159450000	106690000	1264900000	699610000	565270000	2493100000	1147000000	1346000000	2393400000	2226900000	166500000	38776	47	36482	237832;237833;237834;237835;237836;237837	319258;319259;319260;319261;319262;319263	319258			6	
NKPILHTDLDVK	2	Unmodified	1391.7773	0.77726428	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	32.173	32.087	3;4	0.00016608	27119	160511_QHF_FH_JSI12i_3	68.676	56.618			1.0085	1.0111	184.41	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0085	1.0111	184.41	2	1	Median	140120000	67823000	72294000	0	0	0	0	0	0	0	0	0	140120000	67823000	72294000	38777	21	36483	237838;237839	319264;319265	319264			2	
NKPITNSK	2	Unmodified	900.50288	0.50288033	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	0.47053	0.55388	3	0.033851	246	160511_QHF_FH_JSI12i_3	35.908	15.918			17.133	17.25	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17.133	17.25	NaN	1	1	Median	80967000	4756300	76211000	0	0	0	0	0	0	0	0	0	80967000	4756300	76211000	38778	4535	36484	237840	319266	319266			1	
NKPIVNIDPQTAELNHLK	2	Unmodified	2043.1113	0.11128837	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	56.388	56.289	3;4	6.3824E-06	48409	160511_QHF_FH_JSI12i_3	94.882	79.367			0.92973	0.90017	18.076	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0048	0.9297	19.693	3	2	Plateau	0.80039	0.81512	23.049	2	1	Median	520700000	271290000	249410000	0	0	0	0	0	0	207800000	105340000	102460000	312900000	165950000	146950000	38779	662	36485	237841;237842;237843;237844;237845	319267;319268;319269;319270;319271;319272	319271			5	
NKPLFFADK	2	Unmodified	1078.5811	0.58113065	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	39.243	38.387	3	0.0004048	32841	160511_QHF_FH_JSI11i_2	78.655	53.218			1.1182	1.1202	65.232	5	4	Median	1.0904	0.93688	NaN	1	0	Median	1.2932	1.5505	NaN	1	1	Median	0.74385	0.74654	57.396	2	2	Median	2.6817	2.928	NaN	1	1	Median	530570000	288420000	242150000	136430000	64528000	71904000	151610000	78167000	73443000	224440000	138850000	85591000	18091000	6881200	11210000	38780	891	36486	237846;237847;237848;237849;237850	319273;319274;319275;319276;319277;319278	319277			6	
NKPLFFADK	2	Acetyl (K)	1120.5917	0.59169534	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			72.453	61.846	2	0.024189	33058	160513_QHF_FH_JSI10Kac_4	50.607	8.4978			0.72898	0.88184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72898	0.88184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8005200	4636700	3368500	0	0	0	8005200	4636700	3368500	0	0	0	0	0	0	38781	891	36486	237851	319279	319279	629		1	
NKPNMSDPEESRGNDELVK	2	Unmodified	2157.9961	0.99606019	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	3	1		26.424	25.599	3;4	5.0894E-05	22338	160511_QHF_FH_JSI10i_2	86.455	77.955			0.61374	0.68138	49.19	5	5	Median	1.245	1.0871	NaN	1	1	Median	0.56613	0.68138	63.339	3	3	Median	0.61374	0.62262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	204990000	122080000	82907000	31466000	12246000	19219000	154340000	97559000	56785000	19180000	12278000	6902500	0	0	0	38782	2605	36487	237852;237853;237854;237855;237856	319280;319281;319282;319283;319284	319284			5	
NKPQQNLQEDLPTAVEPLMEVTK	2	Unmodified	2621.3371	0.33706714	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	84.937	84.456	3	9.2685E-06	73265	160511_QHF_FH_JSI12i_3	60.278	56.75			0.88881	0.97066	10.747	5	0	Median	NaN	NaN	NaN	0	0	Median	0.74794	0.90013	NaN	1	0	Median	0.89146	0.87563	16.721	2	0	Median	0.95894	0.99402	3.3633	2	0	Median	129360000	57847000	71510000	0	0	0	25748000	12597000	13152000	54592000	24592000	30000000	49017000	20659000	28358000	38783	3849	36488	237857;237858;237859;237860;237861	319285;319286;319287;319288;319289	319289			5	
NKPSDLGTK	2	Unmodified	958.50836	0.50835964	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.06	1	5	5					6		4	3	4	6	7.2856	3.7663	2;3	0.0014074	4411	160511_QHF_FH_JSI12i_2	67.726	51.523			2.4503	2.4001	98.802	17	17	Median	2.5119	2.0886	100.58	4	4	Median	1.4114	1.7081	71.464	3	3	Median	2.5298	2.4406	69.932	4	4	Median	2.9686	3.1975	133.38	6	6	Median	9905000000	2168900000	7736100000	1301800000	225420000	1076300000	1085300000	423670000	661670000	3308000000	518400000	2789600000	4209900000	1001400000	3208500000	38784	1386	36489	237862;237863;237864;237865;237866;237867;237868;237869;237870;237871;237872;237873;237874;237875;237876;237877;237878	319290;319291;319292;319293;319294;319295;319296;319297;319298;319299;319300;319301;319302;319303;319304;319305;319306	319292			17	
NKPTMNYEK	2	Unmodified	1123.5332	0.53319418	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	10.726	10.821	2;3	8.4726E-05	8125	160511_QHF_FH_JSI12i_3	89.171	52.478			0.65469	0.66968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65469	0.66968	NaN	1	1	Median	63830000	46833000	16997000	0	0	0	0	0	0	0	0	0	63830000	46833000	16997000	38785	2245	36490	237879;237880	319307;319308	319308			2	
NKPYISWPSSGGSEPSVTVPLR	1	Unmodified	2357.2016	0.20155994	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			76.64	75.224	3	0.00021163	63110	160511_QHF_FH_JSI10i_3	53.342	48.084			0.73494	0.82305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73494	0.82305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21865000	13083000	8782100	0	0	0	21865000	13083000	8782100	0	0	0	0	0	0	38786	5677	36491	237881;237882	319309;319310	319309			2	
NKPYPVR	1	Unmodified	872.48684	0.48683634	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		8.0667	7.6859	3	0.0084553	5510	160511_QHF_FH_JSI10i_3	53.554	53.554			1.0191	1.1597	10.793	3	1	Median	1.4599	1.1649	NaN	1	1	Median	1.0191	1.1597	NaN	1	0	Median	1.0092	0.96416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	719510000	339500000	380010000	148690000	59657000	89036000	386790000	187380000	199410000	184030000	92466000	91560000	0	0	0	38787	1648	36492	237883;237884;237885	319311;319312;319313;319314	319313			4	
NKSAYFAEK	2	Acetyl (K)	1098.5346	0.53457439	932	P09525	ANXA4	Annexin A4	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			40.522	30.611	2	0.041426	17723	160513_QHF_FH_JSI10Kac_4	53.751	40.714			13.159	15.625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13.159	15.625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4130100	364150	3766000	0	0	0	4130100	364150	3766000	0	0	0	0	0	0	38788	932	36493	237886	319315	319315	685		1	
NKTEDLEATSEHFK	2	Unmodified	1647.774	0.77402939	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	28.206	27.441	3	0.00013293	22865	160511_QHF_FH_JSI11i_2	80.746	73.544			1.2119	1.1573	50.084	6	4	Median	1.1424	1.0325	NaN	1	1	Median	0.99036	1.2128	53.757	2	2	Median	1.2857	1.2972	NaN	1	0	Median	1.118	1.1754	96.794	2	1	Median	461890000	259350000	202540000	47773000	22037000	25736000	117770000	57857000	59912000	71210000	36980000	34230000	225140000	142480000	82664000	38789	4459	36494	237887;237888;237889;237890;237891;237892	319316;319317;319318;319319;319320;319321	319318			6	
NKTEYEEAQDAIVK	2	Unmodified	1636.7944	0.79443049	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	35.16	34.294	2;3	0.00011	30104	160511_QHF_FH_JSI10i_2	85.288	60.945			0.58838	0.58943	50.356	5	5	Median	1.1489	0.97882	58.744	2	2	Median	0.35826	0.43558	NaN	1	1	Median	0.58838	0.58943	NaN	1	1	Median	0.40467	0.43264	NaN	1	1	Median	210890000	119280000	91606000	50219000	20353000	29866000	36548000	27923000	8625800	82759000	41950000	40809000	41362000	29057000	12305000	38790	1557	36495	237893;237894;237895;237896;237897;237898;237899	319322;319323;319324;319325;319326;319327;319328;319329;319330;319331	319331			10	
NKWFFQK	2	Acetyl (K)	1038.5287	0.52870115	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	71.39	62.507	2	0.0036166	33882	160513_QHF_FH_JSI11Kac_6	103.29	87.132			0.34292	0.34636	125.93	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1087	1.3051	NaN	1	0	Median	0.34106	0.32904	NaN	1	0	Median	3.6922	4.0685	NaN	1	1	Median	154260000	106870000	47389000	0	0	0	36217000	19696000	16521000	104330000	85375000	18957000	13714000	1802800	11911000	38791	1953	36496	237900;237901;237902	319332;319333	319332	1969		2	
NKYEDEINK	2	Unmodified	1151.5459	0.54586736	51;810;79;57;78	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT5;KRT79;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.51	1	8	6					5		5	4	6	5	16.697	14.362	2;3	1.3787E-05	11556	160511_QHF_FH_JSI12i_3	86.882	70.992		+	1.0251	1.0589	19.716	19	3	Median	1.0788	0.91352	22.509	4	1	Median	0.88051	1.0783	13.161	4	0	Median	0.99564	0.97176	24.924	6	2	Median	1.051	1.1808	10.261	5	0	Median	7901500000	3719700000	4181800000	1638000000	723810000	914150000	1469300000	749530000	719810000	2473000000	1167500000	1305500000	2321200000	1078800000	1242400000	38792	51;57;78;79;810	36497	237903;237904;237905;237906;237907;237908;237909;237910;237911;237912;237913;237914;237915;237916;237917;237918;237919;237920;237921;237922	319334;319335;319336;319337;319338;319339;319340;319341;319342;319343;319344;319345;319346;319347;319348;319349;319350;319351;319352;319353;319354;319355;319356;319357;319358;319359;319360;319361;319362;319363;319364;319365;319366;319367	319367			34	
NKYEDEINK	2	Acetyl (K)	1193.5564	0.55643205	51;810;79;57;78	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT5;KRT79;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 1	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	34.983	26.301	2	7.7287E-05	15258	160513_QHF_FH_JSI12Kac_3	121.05	72.487		+	0.96304	1.0531	63.016	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99872	1.1891	NaN	1	0	Median	0.38124	0.37759	NaN	1	0	Median	0.96304	1.0531	NaN	1	0	Median	77591000	51078000	26513000	0	0	0	21638000	9978700	11660000	35634000	27977000	7657400	20319000	13123000	7196300	38793	51;57;78;79;810	36497	237923;237924;237925	319368;319369;319370;319371;319372;319373	319370	27;54		6	
NKYEDEINKR	2	Unmodified	1307.647	0.64697839	51;810;79;57	CON__P05787;P05787;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT5;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1	no	no	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	14.721	14.415	3;4	0.0011635	11470	160511_QHF_FH_JSI11i_3	47.302	39.932		+	0.80983	0.93963	34.285	5	1	Median	NaN	NaN	NaN	0	0	Median	0.98315	1.1715	31.196	2	1	Median	0.68148	0.65122	8.3471	2	0	Median	0.96391	1.0273	NaN	1	0	Median	656540000	370370000	286180000	0	0	0	151970000	71097000	80869000	456340000	273310000	183030000	48240000	25964000	22276000	38794	51;57;79;810	36498	237926;237927;237928;237929;237930	319374;319375;319376;319377	319376			4	
NKYEDEINKR	2	Acetyl (K)	1349.6575	0.65754307	51;810;79;57	CON__P05787;P05787;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT8;KRT5;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1	no	no	1	0	0	2		By MS/MS	By matching		14.3	0.471							2	1			2	1		32.913	23.588	3	0.043729	14150	160513_QHF_FH_JSI10Kac_4	40.589	37.057		+	0.501	0.49451	57.932	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1153	1.3361	11.247	2	0	Median	0.501	0.49451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16291000	9200000	7090500	0	0	0	9751900	4551800	5200100	6538700	4648300	1890400	0	0	0	38795	51;57;79;810	36498	237931;237932;237933	319378	319378	27		0	
NKYETEINITK	2	Unmodified	1351.6983	0.69834526	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1				By MS/MS	2.75	0.433		1	3										4	32.561	31.857	2;3	0.00082953	26668	160511_QHF_FH_JSI12i_3	72.089	41.217			1.1972	1.2418	54.439	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1972	1.2418	54.439	2	2	Median	102550000	43621000	58929000	0	0	0	0	0	0	0	0	0	102550000	43621000	58929000	38796	1085	36499	237934;237935;237936;237937	319379;319380;319381;319382	319380			4	
NKYLINGVNANNTR	1	Acetyl (K)	1631.838	0.83796706	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		55.97	45.147	2	0.00095711	24890	160513_QHF_FH_JSI11Kac_5	95.018	69.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1835400	1835400	0	0	0	0	0	0	0	1835400	1835400	0	0	0	0	38797	679	36500	237938	319383	319383	340		1	
NKYNTPK	2	Acetyl (K)	905.46068	0.46068117	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	14.959	7.3718	2	0.011339	6440	160513_QHF_FH_JSI11Kac_4	89.123	59.813			0.37257	0.3857	33.136	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30777	0.30514	NaN	1	0	Median	0.45103	0.48754	NaN	1	0	Median	103320000	72654000	30667000	0	0	0	0	0	0	89097000	63472000	25624000	14224000	9182000	5042100	38798	1590	36501	237939;237940	319384;319385	319384	1606;1607		2	
NLAAFPASHDPDPAIPAPTATPSAR	0	Unmodified	2484.2397	0.23973636	3526	Q8N4C8	MINK1	Misshapen-like kinase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										3	1	67.529	66.712	3	5.2339E-06	58150	160511_QHF_FH_JSI11i_2	60.464	40.224			0.5462	0.55554	63.109	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92539	0.94511	77.994	2	2	Median	0.50866	0.55554	NaN	1	1	Median	74984000	43363000	31622000	0	0	0	0	0	0	53483000	27767000	25715000	21502000	15595000	5906300	38799	3526	36502	237941;237942;237943;237944	319386;319387;319388;319389;319390	319387			5	
NLAEDGETVAR	0	Unmodified	1173.5626	0.56258006	25	A6NED2	RCCD1	RCC1 domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.632	23.105	2	0.0023176	20430	160511_QHF_FH_JSI12i_1	61.765	43.856			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38800	25	36503	237945	319391	319391			1	
NLAENISR	0	Unmodified	915.47739	0.47739386	855;992	P06737;P11217;P11216	PYGL;PYGM;PYGB	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form	no	no	0	0	0	0			By MS/MS		2	0		1										1		20.685	20.362	2	0.031505	16700	160511_QHF_FH_JSI11i_2	49.715	17.602			1.74	1.744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.74	1.744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	107710000	51669000	56045000	0	0	0	0	0	0	107710000	51669000	56045000	0	0	0	38801	855;992	36504	237946	319392	319392			1	
NLAFYWILK	1	Unmodified	1166.6488	0.64881629	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	91.975	83.557	2	1.2343E-05	46629	160513_QHF_FH_JSI9Kac_6	112.17	81.917			0.40647	0.36425	124.15	4	4	Median	0.82932	0.70757	183.32	2	2	Median	0.16426	0.19131	NaN	1	1	Median	0.72796	0.68548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	971990000	585420000	386570000	294380000	143180000	151200000	194170000	163260000	30903000	393100000	278980000	114120000	90343000	0	90343000	38802	4836	36505	237947;237948;237949;237950;237951	319393;319394;319395;319396;319397	319395			5	
NLAHPVIQNFSYETFQQK	1	Unmodified	2163.0749	0.074902863	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	68.482	67.95	3	0.0037423	58611	160511_QHF_FH_JSI12i_3	47.68	38.633			1.966	1.8171	40.774	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.966	1.817	NaN	1	1	Median	2.7324	2.9219	42.666	2	2	Median	94607000	22760000	71847000	0	0	0	0	0	0	51210000	13435000	37775000	43398000	9325600	34072000	38803	2682	36506	237952;237953;237954	319398;319399;319400	319400			3	
NLAIPVINK	1	Unmodified	980.60187	0.6018661	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.661	62.14	2	0.00052912	54136	160511_QHF_FH_JSI11i_2	89.142	63.248			1.4752	1.539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4752	1.539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37106000	14704000	22402000	0	0	0	0	0	0	37106000	14704000	22402000	0	0	0	38804	1769	36507	237955	319401	319401			1	
NLALCPANHAPLQEAAVIPR	0	Unmodified	2154.1368	0.13679161	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.112	69.221	3	1.9792E-10	59788	160511_QHF_FH_JSI12i_2	121.44	111.69			1.0545	1.1297	18.864	4	0	Median	1.0686	0.93677	NaN	1	0	Median	1.0405	1.295	NaN	1	0	Median	0.96048	0.98546	NaN	1	0	Median	1.2198	1.3598	NaN	1	0	Median	446140000	210390000	235750000	48658000	16829000	31829000	102990000	56225000	46761000	187450000	83215000	104240000	107050000	54124000	52921000	38805	1065	36508	237956;237957;237958;237959	319402;319403;319404;319405	319403			4	
NLALDINELKPGNLLK	2	Unmodified	1764.0145	0.014534437	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	93.442	93.081	3	0.0001579	80266	160511_QHF_FH_JSI12i_3	69.729	59.672			0.60611	0.52249	25.191	3	3	Median	0.60611	0.52249	NaN	1	1	Median	0.63914	0.79191	NaN	1	1	Median	0.51903	0.5028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48639000	27913000	20726000	11888000	7039500	4848300	19245000	11159000	8086400	17506000	9714000	7791500	0	0	0	38806	21	36509	237960;237961;237962;237963;237964;237965	319406;319407;319408;319409;319410;319411	319411			6	
NLALGGGLLLLLAESR	0	Unmodified	1608.9563	0.95629128	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	98.383	89.669	2;3	9.5117E-10	51075	160513_QHF_FH_JSI11Kac_6	119.96	62.471			1.1668	1.2391	103.47	4	4	Median	3.6241	3.1335	NaN	1	1	Median	1.1353	1.3306	NaN	1	1	Median	1.199	1.154	NaN	1	1	Median	0.24643	0.25972	NaN	1	1	Median	259530000	80599000	178930000	69457000	13401000	56056000	68734000	25590000	43144000	71411000	23198000	48213000	49927000	18410000	31516000	38807	271	36510	237966;237967;237968;237969;237970;237971;237972	319412;319413;319414;319415;319416;319417;319418	319413			7	
NLALSGFR	0	Unmodified	876.48175	0.48175096	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	49.065	47.667	2	0.012937	40786	160511_QHF_FH_JSI12i_2	52.786	21.482			0.93071	1.0311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93071	1.0311	NaN	1	0	Median	103540000	63853000	39684000	0	0	0	0	0	0	0	0	0	103540000	63853000	39684000	38808	3695	36511	237973	319419	319419			1	
NLAMEATYINHNFSQQCLR	0	Unmodified	2309.0681	0.0681197	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.44		11	2						6	3	5	7	4	70.659	67.52	2;3	1.4207E-54	36685	160513_QHF_FH_JSI10Kac_6	240.04	204.31			0.62037	0.53341	120.98	13	13	Median	1.0484	0.90797	75.226	2	2	Median	0.24594	0.29708	129.83	4	4	Linear	0.30896	0.29763	99.747	4	4	Median	1.793	1.9038	168.46	3	3	Median	1583000000	795460000	787560000	102010000	40964000	61043000	490240000	265070000	225170000	628650000	363310000	265340000	362120000	126120000	236000000	38809	282	36512	237974;237975;237976;237977;237978;237979;237980;237981;237982;237983;237984;237985;237986;237987;237988;237989;237990;237991;237992	319420;319421;319422;319423;319424;319425;319426;319427;319428;319429;319430;319431;319432;319433;319434;319435;319436;319437;319438;319439	319439			20	
NLAMEATYINHNFSQQCLR	0	Oxidation (M)	2325.063	0.063034322	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	71.199	62.131	3	1.431E-05	34192	160513_QHF_FH_JSI10Kac_6	137.61	114.74			1.384	1.4235	73.987	4	4	Median	NaN	NaN	NaN	0	0	Median	0.48361	0.56979	NaN	1	1	Median	1.9489	1.8952	NaN	1	1	Median	1.7246	1.8423	76.954	2	2	Median	105150000	49361000	55785000	0	0	0	36438000	26437000	10001000	14664000	3541900	11122000	54044000	19382000	34662000	38810	282	36512	237993;237994;237995;237996	319440;319441;319442;319443	319443		111	4	
NLAMGVNLTSMSK	1	Unmodified	1364.6792	0.67920649	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.51	3	6	3					4	3	5	6	7	1	69.687	65.548	2	6.0858E-08	35200	160513_QHF_FH_JSI11Kac_6	148.28	127.41			0.78714	0.75555	92.945	19	19	Median	0.62058	0.53487	103.03	5	5	Median	0.51608	0.59816	96.615	6	6	Median	1.108	1.0361	93.518	7	7	Median	0.30872	0.34094	NaN	1	1	Median	4163500000	2587200000	1576300000	941590000	520180000	421420000	924520000	660250000	264270000	1721600000	1051400000	670120000	575820000	355330000	220490000	38811	1010	36513	237997;237998;237999;238000;238001;238002;238003;238004;238005;238006;238007;238008;238009;238010;238011;238012;238013;238014;238015	319444;319445;319446;319447;319448;319449;319450;319451;319452;319453;319454;319455;319456;319457;319458;319459;319460;319461;319462;319463;319464;319465	319451			22	
NLAMGVNLTSMSK	1	Oxidation (M)	1380.6741	0.67412112	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.6	3	4					3	4	1	3	4	5	3	59.752	53.504	2	4.0363E-05	48364	160511_QHF_FH_JSI10i_1	84.821	65.059			1.1828	1.1552	71.446	13	11	Median	1.8133	1.5157	114.17	3	3	Median	0.87289	1.0361	67.968	3	1	Median	1.2228	1.1813	68.85	4	4	Median	1.2773	1.4342	71.407	3	3	Plateau	329880000	143650000	186230000	30598000	8286500	22311000	54980000	31149000	23831000	145350000	59414000	85933000	98950000	44799000	54151000	38812	1010	36513	238016;238017;238018;238019;238020;238021;238022;238023;238024;238025;238026;238027;238028;238029;238030	319466;319467;319468;319469;319470;319471;319472;319473;319474;319475;319476;319477;319478;319479;319480;319481	319473		602;603	16	
NLAMGVNLTSMSK	1	2 Oxidation (M)	1396.669	0.66903574	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	2	0		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		49.627	39.133	2	0.0028552	21869	160513_QHF_FH_JSI11Kac_5	93.258	72.954			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38813	1010	36513	238031;238032	319482;319483	319483		602;603	2	
NLANTVTEEILEK	1	Unmodified	1472.7722	0.77223848	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.615	2	8	3							4	4	3	2	78.177	77.311	2	1.0385E-16	68031	160511_QHF_FH_JSI11i_2	209.85	181.64			1.3441	1.1197	101.89	13	13	Median	1.1085	0.93622	109.34	4	4	Median	1.1508	1.3489	93.776	4	4	Median	3.2485	3.3325	117.22	3	3	Median	0.87772	1.007	171.27	2	2	Median	2957200000	1395000000	1562200000	550590000	234730000	315870000	741760000	384280000	357480000	1055500000	449840000	605700000	609270000	326130000	283140000	38814	423	36514	238033;238034;238035;238036;238037;238038;238039;238040;238041;238042;238043;238044;238045	319484;319485;319486;319487;319488;319489;319490;319491;319492;319493;319494;319495;319496;319497;319498;319499;319500;319501	319499			18	
NLAPDEK	1	Unmodified	785.39193	0.3919329	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.786	10.403	2	0.024608	8309	160511_QHF_FH_JSI12i_1	48.756	10.622			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38815	660	36515	238046	319502	319502			1	
NLATAYDNFVELVANLK	1	Unmodified	1893.9836	0.98362824	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	102.85	102.74	2;3	6.4139E-31	88652	160511_QHF_FH_JSI12i_2	239.61	200.35			0.95234	1.0863	35.084	5	3	Median	1.2497	1.0958	NaN	1	1	Median	1.0018	1.2306	NaN	1	0	Median	0.49871	0.51144	NaN	1	1	Median	0.92153	1.0471	5.1925	2	1	Median	371920000	221210000	150710000	32287000	17686000	14601000	89518000	46952000	42566000	90418000	71461000	18958000	159700000	85111000	74589000	38816	3766	36516	238047;238048;238049;238050;238051;238052	319503;319504;319505;319506;319507;319508	319503			6	
NLATTVTEEILEK	1	Unmodified	1459.777	0.77698951	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							3	2	1	2	86.99	86.091	2	2.287E-22	74660	160511_QHF_FH_JSI12i_2	178.67	130.38			0.96893	0.97773	29.837	7	2	Median	1.0746	0.93565	38.263	3	1	Median	1.0393	1.2621	14.454	2	1	Median	0.96893	0.97773	NaN	1	0	Median	0.76566	0.8253	NaN	1	0	Median	992260000	441310000	550950000	300160000	133740000	166420000	205810000	88528000	117280000	248740000	130390000	118350000	237550000	88648000	148900000	38817	326	36517	238053;238054;238055;238056;238057;238058;238059;238060	319509;319510;319511;319512;319513;319514;319515;319516;319517;319518;319519;319520;319521;319522;319523;319524;319525;319526	319512			18	
NLAYDTLPVLIHGNGPTK	1	Unmodified	1922.0262	0.026161756	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	77.488	76.654	2;3	2.5225E-11	67390	160511_QHF_FH_JSI11i_2	113.65	91.175			0.94191	1.0249	7.2005	4	0	Linear	1.0228	0.87287	NaN	1	0	Median	0.72882	0.8931	NaN	1	0	Median	1.0209	1.0123	NaN	1	0	Median	0.86899	0.98265	NaN	1	0	Median	572270000	263110000	309150000	85357000	46349000	39009000	135810000	75394000	60415000	213500000	75933000	137560000	137600000	65438000	72167000	38818	2194	36518	238061;238062;238063;238064;238065	319527;319528;319529;319530;319531;319532;319533;319534;319535;319536;319537	319534			11	
NLCSDDTPMVR	0	Unmodified	1306.5646	0.56457067	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		34.06	33.815	2	0.0055296	30430	160511_QHF_FH_JSI11i_1	63.076	45.563			1.0318	0.99165	158.28	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0318	0.99165	158.28	2	2	Median	NaN	NaN	NaN	0	0	Median	139350000	68255000	71099000	0	0	0	0	0	0	139350000	68255000	71099000	0	0	0	38819	1345	36519	238066;238067	319538;319539	319539			2	
NLDADIWKK	2	Unmodified	1101.5819	0.58185893	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	46.478	45.523	3	0.02746	39092	160511_QHF_FH_JSI12i_2	33.229	24.47			2.8133	2.5057	10.412	3	3	Plateau	NaN	NaN	NaN	0	0	Median	2.1272	2.5057	NaN	1	1	Median	2.9463	2.9149	NaN	1	1	Median	2.1731	2.3876	NaN	1	1	Median	71948000	24247000	47701000	0	0	0	16730000	6043500	10686000	33245000	11432000	21813000	21973000	6771000	15202000	38820	2947	36520	238068;238069;238070	319540;319541;319542	319540			3	
NLDAVHDITVAYPHNIPQSEK	1	Unmodified	2360.1761	0.17607347	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	64.613	63.781	3	1.5826E-05	55454	160511_QHF_FH_JSI11i_2	73.675	61.824			0.51675	0.51541	72.532	5	5	Median	0.33535	0.28731	NaN	1	1	Median	0.28188	0.34429	NaN	1	1	Median	0.9591	0.96391	88.536	2	2	Median	0.6455	0.70667	NaN	1	1	Median	125300000	77855000	47447000	20779000	17603000	3175600	23403000	17352000	6051200	58979000	27827000	31152000	22142000	15074000	7068200	38821	3154	36521	238071;238072;238073;238074;238075;238076	319543;319544;319545;319546;319547;319548;319549;319550	319546			8	
NLDCPELISEFMK	1	Unmodified	1594.7371	0.7371153	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		96.053	95.835	2	0.013097	84244	160511_QHF_FH_JSI9i_2	45.257	39.016			0.80623	0.75584	59.423	2	0	Median	0.56201	0.49653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1566	1.1506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59260000	29436000	29824000	16434000	10859000	5574300	0	0	0	42826000	18577000	24250000	0	0	0	38822	1572	36522	238077;238078	319551	319551			1	
NLDDGIDDER	0	Unmodified	1160.4946	0.49456007	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	26.883	24.76	2	0.00026255	22137	160511_QHF_FH_JSI12i_1	79.974	60.197			0.87628	0.9097	10.383	5	0	Median	1.1172	0.9091	NaN	1	0	Median	0.77132	0.91422	NaN	1	0	Median	0.79278	0.76474	NaN	1	0	Median	0.91972	0.96417	8.224	2	0	Median	1860100000	971080000	889030000	431930000	215640000	216290000	409980000	229210000	180770000	493080000	224250000	268830000	525130000	301990000	223140000	38823	1009;4688	36523	238079;238080;238081;238082;238083	319552;319553;319554;319555;319556;319557;319558;319559;319560;319561;319562	319555			11	
NLDDGIDDERLR	0	Unmodified	1429.6797	0.67973508	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								3	3	3	2	37.928	37.067	2;3	1.0074E-21	31657	160511_QHF_FH_JSI11i_2	167.18	130.75			1.0114	1.0949	18.425	11	1	Median	1.4705	1.2515	14.531	3	1	Median	0.78556	0.95936	9.7976	3	0	Median	1.0108	1.016	15.232	3	0	Median	1.0726	1.1573	7.8399	2	0	Median	1924900000	975180000	949670000	286150000	129760000	156390000	572670000	329570000	243100000	743870000	352610000	391260000	322160000	163240000	158920000	38824	1009;4688	36524	238084;238085;238086;238087;238088;238089;238090;238091;238092;238093;238094	319563;319564;319565;319566;319567;319568;319569;319570;319571;319572;319573;319574;319575;319576;319577;319578	319576			16	
NLDDGIDDERLRK	1	Unmodified	1557.7747	0.7746981	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	2		By MS/MS			2	0		1									1			31.164	30.225	3	0.025038	26417	160511_QHF_FH_JSI10i_2	54.524	39.838			0.69562	0.83413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69562	0.83413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74758000	35388000	39370000	0	0	0	74758000	35388000	39370000	0	0	0	0	0	0	38825	1009;4688	36525	238095	319579	319579			0	
NLDDLTLLK	1	Unmodified	1043.5863	0.58627561	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	3	2	2	73.009	72.379	2	0.0011234	65413	160511_QHF_FH_JSI10i_1	80.231	38.579			1.8162	1.5948	177.95	9	9	Median	2.6032	2.0927	146.87	3	3	Plateau	0.88463	1.0504	178.27	3	3	Plateau	6.6425	6.4927	NaN	1	1	Median	0.93036	0.96471	317.81	2	2	Median	429960000	232460000	197500000	134220000	68686000	65533000	140590000	86084000	54501000	82102000	38143000	43959000	73056000	39552000	33505000	38826	2842	36526	238096;238097;238098;238099;238100;238101;238102;238103;238104;238105	319580;319581;319582;319583;319584;319585;319586;319587;319588;319589	319584			10	
NLDDTIDDEK	1	Unmodified	1176.5146	0.51462681	2385	Q13310;P0CB38	PABPC4;PABPC4L	Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					2	1	2	1	29.704	27.72	2	0.00082431	24732	160511_QHF_FH_JSI11i_1	83	71.231			1.1698	1.203	95.787	6	6	Median	1.5092	1.2125	130.83	2	2	Median	0.27852	0.33837	NaN	1	1	Median	1.4996	1.4621	98.171	2	2	Median	1.8324	1.9816	NaN	1	1	Median	1521800000	676730000	845050000	516090000	173400000	342690000	274440000	173630000	100810000	728150000	328570000	399590000	3098400	1129700	1968600	38827	2385	36527	238106;238107;238108;238109;238110;238111	319590;319591;319592;319593;319594;319595	319591			6	
NLDENGLDLLSK	1	Unmodified	1329.6776	0.67760981	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	1	3	72.212	68.322	2	2.7955E-11	62608	160511_QHF_FH_JSI10i_1	152.54	114.99			0.701	0.71146	34.021	6	3	Median	0.58331	0.47665	NaN	1	1	Median	0.79625	0.94371	NaN	1	0	Median	0.66166	0.64451	NaN	1	0	Median	0.74269	0.78537	34.979	3	2	Median	2725800000	1521800000	1204100000	604870000	351370000	253490000	752060000	419870000	332200000	739630000	369230000	370400000	629280000	381280000	248000000	38828	850	36528	238112;238113;238114;238115;238116;238117	319596;319597;319598;319599;319600;319601;319602;319603;319604	319600			9	
NLDFGIDMDSR	0	Unmodified	1281.566	0.56595087	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.338	68.734	2	0.010266	62619	160511_QHF_FH_JSI12i_1	47.288	35.798			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38829	3634	36529	238118	319605	319605			1	
NLDFQDVLDK	1	Unmodified	1205.5928	0.59281755	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.773	74.098	2	9.6597E-06	67512	160511_QHF_FH_JSI12i_1	104.05	92.2			0.84262	0.88832	35.979	8	3	Median	0.7082	0.61098	2.7369	2	1	Median	0.54664	0.66689	37.091	2	1	Median	0.99991	1.0063	14.178	2	0	Median	1.1508	1.2488	24.321	2	1	Median	1354000000	698060000	655930000	265620000	122940000	142680000	333590000	178500000	155090000	375050000	185480000	189570000	379730000	211140000	168590000	38830	5596	36530	238119;238120;238121;238122;238123;238124;238125;238126	319606;319607;319608;319609;319610;319611;319612;319613;319614;319615;319616;319617;319618;319619;319620;319621	319611			15	
NLDGISHAPNAVK	1	Unmodified	1334.6943	0.69426293	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		13								3	3	3	4	32.05	31.096	2;3	5.7848E-06	27177	160511_QHF_FH_JSI9i_2	126.71	75.643			2.6787	3.132	232.89	10	10	Median	0.88745	0.77231	263.76	2	2	Median	5.3168	6.5484	99.284	2	2	Median	1.0831	1.0928	478.76	2	2	Median	1.0489	1.133	204.98	4	4	Median	1269600000	430740000	838830000	219030000	139450000	79581000	236290000	58702000	177590000	467910000	71930000	395980000	346340000	160660000	185680000	38831	3891	36531	238127;238128;238129;238130;238131;238132;238133;238134;238135;238136;238137;238138;238139	319622;319623;319624;319625;319626;319627;319628;319629;319630;319631;319632;319633;319634;319635	319628			14	
NLDIERPTYTNLNR	0	Unmodified	1717.8747	0.87474649	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.56	6	12	8					3	4	8	9	9	7	51.219	48.574	2;3	2.5216E-40	40583	160511_QHF_FH_JSI10i_3	210.91	154.55			0.84587	0.89359	32.257	30	9	Median	1.1492	0.93179	46.345	8	3	Median	0.74172	0.87001	24.262	8	3	Median	0.85083	0.82294	32.248	7	2	Median	0.82596	0.8541	8.2703	7	1	Median	49511000000	25356000000	24155000000	17537000000	8783100000	8753800000	16633000000	9255100000	7377400000	11341000000	5269200000	6071500000	4001100000	2048500000	1952600000	38832	2073;2074;4359	36532	238140;238141;238142;238143;238144;238145;238146;238147;238148;238149;238150;238151;238152;238153;238154;238155;238156;238157;238158;238159;238160;238161;238162;238163;238164;238165;238166;238167;238168;238169;238170;238171;238172	319636;319637;319638;319639;319640;319641;319642;319643;319644;319645;319646;319647;319648;319649;319650;319651;319652;319653;319654;319655;319656;319657;319658;319659;319660;319661;319662;319663;319664;319665;319666;319667;319668;319669;319670;319671;319672;319673;319674;319675;319676;319677;319678;319679;319680;319681	319644			46	
NLDISRPDKK	2	Unmodified	1184.6513	0.65133548	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		16.94	16.94	3	0.018427	14013	160511_QHF_FH_JSI11i_3	48.44	35.863			3.4598	3.2864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4598	3.2864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	205830000	82606000	123230000	0	0	0	0	0	0	205830000	82606000	123230000	0	0	0	38833	1602	36533	238173	319682	319682			1	
NLDKSIDNK	2	Acetyl (K)	1087.551	0.55095274	1009;2385	Q13310;P0CB38;P11940	PABPC4;PABPC4L;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like;Polyadenylate-binding protein 1	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	0.433					2	6				1	3	2	2	33.122	23.296	2	7.0631E-08	15275	160513_QHF_FH_JSI12Kac_3	145.9	110.61			3.9931	3.882	267.74	8	8	Median	23.552	19.202	NaN	1	1	Median	0.67699	0.78482	266.05	3	3	Median	3.6629	3.5971	424.66	2	2	Median	3.6726	3.9994	389.69	2	2	Median	151390000	40842000	110550000	42905000	1368500	41537000	45733000	21418000	24315000	36014000	16239000	19775000	26737000	1816600	24921000	38834	2385;1009	36534	238174;238175;238176;238177;238178;238179;238180;238181	319683;319684;319685;319686;319687;319688;319689;319690	319687	809;2458		8	
NLDLAAPTAEEAQR	0	Unmodified	1497.7423	0.74233534	3518	Q8N3E9	PLCD3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	48.072	47.302	2	0.00067518	42508	160511_QHF_FH_JSI10i_1	89.43	72.199			0.32942	0.23599	29.704	3	3	Plateau	0.28989	0.23518	NaN	1	1	Median	0.32942	0.39408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22555	0.23599	NaN	1	1	Median	296980000	250790000	46189000	82479000	66925000	15554000	77461000	60644000	16817000	0	0	0	137040000	123220000	13818000	38835	3518	36535	238182;238183;238184	319691;319692;319693	319692			3	
NLDLAVLELMQSSVDNTK	1	Unmodified	1989.0089	0.0088567119	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		6								2	1	1	2	102.03	101.92	2;3	4.3608E-160	89718	160511_QHF_FH_JSI11i_2	306.05	270.84			0.88263	0.949	38.739	6	1	Median	0.84223	0.71487	2.1962	2	0	Median	0.91603	1.1413	NaN	1	0	Median	0.78213	0.78907	NaN	1	0	Median	1.3478	1.4975	35.36	2	1	Median	2202200000	1157700000	1044500000	634410000	370760000	263650000	386590000	197100000	189490000	336190000	187100000	149100000	845030000	402730000	442290000	38836	2094	36536	238185;238186;238187;238188;238189;238190	319694;319695;319696;319697;319698;319699	319699			6	
NLDLSWSELK	1	Unmodified	1203.6136	0.61355299	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				77.177	76.429	2	0.0097271	67431	160511_QHF_FH_JSI9i_2	49.35	26.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38837	2303	36537	238191	319700	319700			1	
NLDLSWSELKK	2	Unmodified	1331.7085	0.70851601	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			65.536	64.701	3	0.02302	57353	160511_QHF_FH_JSI10i_2	34.685	29.369			2.5477	3.1015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5477	3.1015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26891000	10636000	16255000	0	0	0	26891000	10636000	16255000	0	0	0	0	0	0	38838	2303	36538	238192	319701	319701			1	
NLDNAAEAAEQFK	1	Unmodified	1419.663	0.66302238	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	53.285	52.424	2	0.00043529	47661	160511_QHF_FH_JSI12i_1	92.781	76.583			0.3282	0.32251	159.05	4	4	Median	1.6171	1.3439	147.07	2	2	Median	0.18819	0.21894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.090097	0.0921	NaN	1	1	Median	259490000	145550000	113940000	152810000	53867000	98938000	40088000	31052000	9036500	0	0	0	66595000	60631000	5963500	38839	2883	36539	238193;238194;238195;238196	319702;319703;319704;319705	319702			4	
NLDPDVFNQIVK	1	Unmodified	1400.73	0.72997974	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								1	2	2	2	82.614	82.094	2	8.7075E-05	74963	160511_QHF_FH_JSI12i_1	101.38	73.176			1.1074	1.1135	46.705	6	5	Median	1.2702	1.0435	NaN	1	1	Median	0.71286	0.84499	48.199	2	2	Median	1.2239	1.196	NaN	1	1	Median	0.9081	0.98398	87.802	2	1	Median	273370000	157310000	116060000	43360000	21032000	22328000	112140000	68872000	43263000	55239000	28817000	26422000	62631000	38588000	24043000	38840	4753	36540	238197;238198;238199;238200;238201;238202;238203	319706;319707;319708;319709;319710;319711;319712	319708			7	
NLDPFLLFDEFK	1	Unmodified	1496.7551	0.75513185	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	2	2	102.65	102.57	2	9.6417E-16	88447	160511_QHF_FH_JSI12i_2	156.58	148.36			0.81984	0.90124	15.849	9	3	Median	1.2077	1.0145	4.6282	2	0	Median	0.66912	0.79429	4.1002	3	1	Median	1.1358	1.1089	7.1755	2	2	Median	0.79271	0.83823	10.249	2	0	Median	3252200000	1683300000	1568900000	489390000	231740000	257650000	787230000	475950000	311290000	726460000	332440000	394010000	1249100000	643140000	605980000	38841	157	36541	238204;238205;238206;238207;238208;238209;238210;238211;238212	319713;319714;319715;319716;319717;319718;319719;319720;319721;319722;319723;319724;319725	319715			13	
NLDQSGTNVAK	1	Unmodified	1145.5677	0.56766543	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				15.598	14.579	2	0.0007418	11893	160511_QHF_FH_JSI9i_1	81.338	59.874			1.1479	0.9451	NaN	1	1	Median	1.1479	0.9451	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71174000	38487000	32687000	71174000	38487000	32687000	0	0	0	0	0	0	0	0	0	38842	4360	36542	238213	319726	319726			1	
NLDTGEEIPLSLAEEK	1	Unmodified	1756.8731	0.87307474	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.711	76.232	2	5.5627E-08	69021	160511_QHF_FH_JSI10i_1	136.17	120.41			12.459	12.711	14.955	4	4	Median	16.625	13.196	NaN	1	1	Median	13.478	15.611	NaN	1	1	Median	11.416	10.93	NaN	1	1	Median	11.517	12.244	NaN	1	1	Median	4399900000	364270000	4035600000	1167400000	71863000	1095500000	1125900000	87635000	1038300000	1065000000	96758000	968230000	1041600000	108010000	933590000	38843	2902	36543	238214;238215;238216;238217	319727;319728;319729;319730;319731	319729			5	
NLDVQLLDTK	1	Unmodified	1157.6292	0.62920306	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	64.295	63.811	2	0.00023683	57697	160511_QHF_FH_JSI10i_1	91.752	63.77			1.3622	1.6209	34.234	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3622	1.6209	NaN	1	1	Median	2.5207	2.4157	NaN	1	1	Median	1.2008	1.2222	NaN	1	0	Median	222950000	107880000	115060000	0	0	0	76271000	42220000	34051000	61901000	24480000	37421000	84773000	41183000	43590000	38844	1016	36544	238218;238219;238220	319732;319733;319734	319734			3	
NLDWFPR	0	Unmodified	946.4661	0.4661009	2549;2547;2546	Q14571;Q14573;Q14643	ITPR2;ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		66.703	66.049	2	0.053362	57462	160511_QHF_FH_JSI11i_2	47.067	1.3491			0.41967	0.5135	201.09	3	3	Median	NaN	NaN	NaN	0	0	Median	0.41967	0.5135	NaN	1	1	Median	1.2744	1.2995	274.09	2	2	Median	NaN	NaN	NaN	0	0	Median	94398000	46719000	47679000	0	0	0	23473000	15139000	8334000	70925000	31580000	39345000	0	0	0	38845	2546;2547;2549	36545	238221;238222;238223	319735;319736;319737	319735			3	
NLDYVATSIHEAVTK	1	Unmodified	1659.8468	0.84680041	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	4.28		16	1						2	6	4	5	4	71.213	69.418	2;3	6.8496E-07	61394	160511_QHF_FH_JSI11i_2	139.86	117.22			4.4145	4.4786	255.27	18	18	Median	5.3548	4.5356	217.92	6	6	Median	1.1285	1.3663	326.17	4	4	Median	0.89433	0.88482	257.75	5	5	Median	10.041	11.287	372.58	3	3	Median	1606700000	774940000	831800000	281620000	121570000	160050000	372700000	239540000	133160000	643460000	291250000	352210000	308950000	122580000	186370000	38846	1111	36546	238224;238225;238226;238227;238228;238229;238230;238231;238232;238233;238234;238235;238236;238237;238238;238239;238240;238241;238242	319738;319739;319740;319741;319742;319743;319744;319745;319746;319747;319748;319749;319750;319751;319752;319753;319754;319755;319756	319751			19	
NLEALALDLMEPEQAVDLTLPK	1	Unmodified	2422.2665	0.26652796	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							3	5	4	4	102.83	102.75	2;3	2.8996E-57	88661	160511_QHF_FH_JSI12i_2	264.16	259.92			0.92575	0.94127	32.993	15	4	Median	0.89447	0.76049	11.58	2	1	Median	0.80582	0.94127	32.284	5	2	Median	0.86501	0.89538	18.502	4	0	Linear	0.90809	0.95843	48.17	4	1	Median	2579400000	1358300000	1221200000	230890000	111110000	119780000	648240000	366330000	281910000	1134600000	609990000	524620000	565690000	270830000	294870000	38847	1023	36547	238243;238244;238245;238246;238247;238248;238249;238250;238251;238252;238253;238254;238255;238256;238257;238258	319757;319758;319759;319760;319761;319762;319763;319764;319765;319766;319767;319768;319769;319770;319771;319772;319773;319774;319775;319776;319777;319778;319779;319780;319781	319763			25	
NLEAMNPPLFLR	0	Unmodified	1413.7439	0.74385566	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	86.863	86.157	2	6.0319E-05	75747	160511_QHF_FH_JSI11i_2	107.79	62.42			0.53635	0.53715	13.274	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.53411	0.66585	NaN	1	0	Median	0.53635	0.53715	NaN	1	1	Median	0.49721	0.52246	NaN	1	1	Median	43111000	29323000	13788000	0	0	0	10889000	7765500	3123900	18495000	11379000	7116800	13726000	10179000	3546900	38848	2497	36548	238259;238260;238261	319782;319783;319784	319783			3	
NLEAVETLGSTSTICSDK	1	Unmodified	1923.9095	0.9095366	821;1032;2467	P05023;P13637;Q13733	ATP1A1;ATP1A3;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	65.537	65.068	2;3	7.8334E-12	59241	160511_QHF_FH_JSI11i_1	174.62	152.56			0.33381	0.32055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33381	0.32055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	171670000	104810000	66855000	0	0	0	27018000	15569000	11449000	96318000	59693000	36625000	48329000	29549000	18780000	38849	821;1032;2467	36549	238262;238263;238264;238265;238266;238267;238268;238269;238270	319785;319786;319787;319788;319789;319790;319791;319792;319793;319794	319787			10	
NLEAYAANPHSFVFTR	0	Unmodified	1835.8955	0.89548193	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		3										3		68.738	68.15	2;3	3.2942E-05	59515	160511_QHF_FH_JSI11i_2	131.26	106.4			0.48799	0.48862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48799	0.48862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85929000	44739000	41190000	0	0	0	0	0	0	85929000	44739000	41190000	0	0	0	38850	4914	36550	238271;238272;238273	319795;319796;319797	319795			3	
NLEEGHSSTVAAHYNELQEVGLEK	1	Unmodified	2653.262	0.26198794	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			56.277	55.368	3	1.0553E-16	48928	160511_QHF_FH_JSI10i_2	125.58	118.01			1.129	1.358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.129	1.358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25423000	15396000	10027000	0	0	0	25423000	15396000	10027000	0	0	0	0	0	0	38851	301	36551	238274	319798	319798			1	
NLEELEEK	1	Unmodified	1002.487	0.4869555	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	33.545	32.989	2	0.0015803	28867	160511_QHF_FH_JSI9i_1	101.64	30.725			11.877	12.669	271.42	6	6	Median	21.637	17.714	NaN	1	1	Median	0.7033	0.81716	410.82	2	2	Median	10.964	10.754	NaN	1	1	Median	2.78	2.8854	343.68	2	2	Median	674560000	164630000	509930000	105810000	6909500	98898000	225440000	81259000	144190000	185920000	16598000	169320000	157390000	59864000	97529000	38852	5433	36552	238275;238276;238277;238278;238279;238280	319799;319800;319801;319802;319803;319804	319804			6	
NLEELNISSAQ	0	Unmodified	1216.5935	0.59354583	5531	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	60.312	59.82	2	0.00076191	54235	160511_QHF_FH_JSI10i_1	68.626	61.731			1.5273	1.4942	51.438	3	0	Median	NaN	NaN	NaN	0	0	Median	2.5736	3.0646	NaN	1	0	Median	1.5273	1.4942	NaN	1	0	Median	1.1021	1.1308	NaN	1	0	Median	150220000	52779000	97439000	0	0	0	60716000	19302000	41414000	42122000	15582000	26541000	47379000	17895000	29484000	38853	5531	36553	238281;238282;238283	319805;319806	319806			1	
NLEFQGPLEISR	0	Unmodified	1401.7252	0.72522871	19	A5D8V6	VPS37C	Vacuolar protein sorting-associated protein 37C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.809	71.523	2	0.001163	61710	160511_QHF_FH_JSI12i_2	67.153	40.639			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38854	19	36554	238284	319807	319807			1	
NLEGANQHVSK	1	Unmodified	1195.5945	0.59454889	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	2	3	9.9249	9.4372	2;3	1.0249E-05	7088	160511_QHF_FH_JSI12i_2	103.43	57.835			0.33738	0.31347	113.82	8	8	Median	0.64536	0.55988	92.256	2	2	Median	0.70481	0.86445	195.62	2	2	Median	0.86801	0.86633	133.53	2	2	Median	0.19484	0.21429	8.6866	2	2	Median	540320000	284220000	256100000	205780000	95400000	110380000	64608000	36829000	27780000	106750000	46827000	59928000	163180000	105170000	58010000	38855	3377	36555	238285;238286;238287;238288;238289;238290;238291;238292;238293	319808;319809;319810;319811;319812;319813;319814;319815;319816	319810			9	
NLEGYVGFANLPNQVYR	0	Unmodified	1952.9745	0.97446054	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	87.649	86.799	2;3	5.0617E-06	76450	160511_QHF_FH_JSI11i_2	97.904	88.808			1.2845	1.3649	27.224	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1688	1.1578	NaN	1	1	Median	1.5397	1.64	25.967	2	1	Median	93578000	41403000	52175000	0	0	0	0	0	0	26241000	10881000	15360000	67337000	30522000	36815000	38856	2725	36556	238294;238295;238296	319817;319818;319819	319819			3	
NLEGYVGFANLPNQVYRK	1	Unmodified	2081.0694	0.069423554	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		3								2			1	78.798	77.915	3	0.00010711	68614	160511_QHF_FH_JSI9i_2	78.95	65.913			1.5522	0.89407	72.21	3	3	Plateau	1.0468	0.89407	87.7	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5522	1.6969	NaN	1	1	Median	271070000	126080000	144990000	252800000	119570000	133230000	0	0	0	0	0	0	18269000	6511800	11757000	38857	2725	36557	238297;238298;238299	319820;319821;319822	319821			3	
NLEISQQK	1	Unmodified	958.50836	0.50835964	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.174	18.693	2	0.0045395	16280	160511_QHF_FH_JSI12i_1	75.738	23.335			0.12547	0.12816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12547	0.12816	NaN	1	1	Median	25696000	22749000	2946600	0	0	0	0	0	0	0	0	0	25696000	22749000	2946600	38858	4750	36558	238300	319823	319823			1	
NLELNDDTILNDIK	1	Unmodified	1628.8257	0.82573061	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			85.094	84.954	2	0.00024554	77086	160511_QHF_FH_JSI10i_1	105.17	69.946			1.1464	1.3005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1464	1.3005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23620000	12055000	11565000	0	0	0	23620000	12055000	11565000	0	0	0	0	0	0	38859	3103	36559	238301;238302	319824;319825	319824			2	
NLENGALQPSDLDRNK	1	Unmodified	1782.886	0.88603946	5721	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	41.006	40.092	3	0.0026482	34253	160511_QHF_FH_JSI12i_2	57.499	47.654			0.20876	0.21942	36.816	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28089	0.28466	NaN	1	1	Median	0.15515	0.16913	NaN	1	1	Median	41757000	34735000	7022200	0	0	0	0	0	0	19109000	16580000	2529500	22648000	18156000	4492800	38860	5721	36560	238303;238304	319826;319827	319826			2	
NLEPALPGR	0	Unmodified	965.52943	0.52942943	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	41.23	39.859	2	0.0022514	34339	160511_QHF_FH_JSI11i_2	66.351	29.33			1.1729	1.3194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1729	1.3194	NaN	1	1	Median	69055000	29614000	39442000	0	0	0	0	0	0	0	0	0	69055000	29614000	39442000	38861	2601	36561	238305;238306;238307	319828;319829;319830	319830			3	
NLEPEWAAAASEVK	1	Unmodified	1513.7413	0.7412727	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	2.98	9	10						1		6	6	5	3	68.671	67.487	2;3	1.0016E-09	58317	160511_QHF_FH_JSI12i_2	146.07	110.85			0.971	0.94463	104.36	19	8	Median	0.65192	0.54834	68.967	6	3	Median	0.66663	0.79968	143.51	6	4	Median	0.971	0.94463	117.56	5	1	Median	1.216	1.3205	14.09	2	0	Median	6292700000	3803700000	2489100000	1665800000	835990000	829830000	2133300000	1508500000	624740000	1873500000	1198900000	674520000	620220000	260230000	359990000	38862	2628	36562	238308;238309;238310;238311;238312;238313;238314;238315;238316;238317;238318;238319;238320;238321;238322;238323;238324;238325;238326;238327	319831;319832;319833;319834;319835;319836;319837;319838;319839;319840;319841;319842;319843;319844;319845;319846;319847;319848;319849;319850;319851;319852;319853;319854;319855;319856;319857;319858;319859;319860;319861	319837			31	
NLEPGKQISR	1	Acetyl (K)	1182.6357	0.63568542	5272	Q9UER7	DAXX	Death domain-associated protein 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	39.036	29.326	2	0.0051355	17438	160513_QHF_FH_JSI12Kac_4	68.893	51.029			0.95988	1.0378	10.589	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77807	0.91635	NaN	1	0	Median	1.1343	1.1312	NaN	1	0	Median	0.95988	1.0378	NaN	1	0	Median	18426000	9080900	9345300	0	0	0	6284100	3492600	2791500	5228100	2628300	2599700	6914000	2960000	3954000	38863	5272	36563	238328;238329;238330	319862;319863	319863	3351		2	
NLEPKYK	2	Acetyl (K)	932.49673	0.49673232	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	33.223	24.036	2	0.019473	15077	160513_QHF_FH_JSI11Kac_4	77.058	35.556			0.32689	0.32346	91.635	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2888	1.5423	NaN	1	0	Median	0.32689	0.32346	NaN	1	0	Median	0.28648	0.30792	NaN	1	0	Median	150070000	102080000	47994000	0	0	0	24895000	10353000	14541000	106310000	76924000	29390000	18864000	14801000	4063300	38864	1344	36564	238331;238332;238333	319864;319865;319866	319864	1274		3	
NLEQFAR	0	Unmodified	876.44537	0.44536545	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.602	30.222	2	0.035052	25628	160511_QHF_FH_JSI11i_2	50.966	15.86			0.13029	0.12987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13029	0.12987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51595000	46165000	5429500	0	0	0	0	0	0	51595000	46165000	5429500	0	0	0	38865	4603	36565	238334	319867	319867			1	
NLEQLGGTVTNPGGSGTSSR	0	Unmodified	1930.9344	0.93444622	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	1	3	2	47.021	46.527	2	7.3955E-18	42339	160511_QHF_FH_JSI12i_1	182.35	163.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67662000	40388000	27274000	0	0	0	0	0	0	52761000	25486000	27274000	14902000	14902000	0	38866	2716	36566	238335;238336;238337;238338;238339;238340;238341	319868;319869;319870;319871;319872;319873;319874	319870			7	
NLETPLCK	1	Unmodified	973.49027	0.49026674	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.67	6.13	1						2				1	1	1	44.5	34.283	2	0.0028954	31222	160511_QHF_FH_JSI12i_1	75.213	39.333			0.77234	0.75245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77234	0.75245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9690100	5067700	4622400	0	0	0	0	0	0	9690100	5067700	4622400	0	0	0	38867	1835	36567	238342;238343;238344	319875;319876;319877	319875			3	
NLEVGIRK	1	Unmodified	927.55016	0.55016488	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		23.794	23.164	2	0.0048004	19431	160511_QHF_FH_JSI11i_3	86.794	46.691			0.37749	0.46841	139.15	3	3	Median	0.36128	0.31365	NaN	1	1	Median	0.37749	0.46841	NaN	1	1	Median	4.3415	4.1621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	470770000	225630000	245140000	78257000	54803000	23454000	87502000	50234000	37268000	305010000	120590000	184420000	0	0	0	38868	5454	36568	238345;238346;238347	319878;319879;319880	319878			3	
NLEYDDETMELILPSGAR	0	Unmodified	2064.9674	0.96738583	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			90.802	90.742	2	4.6223E-05	82340	160511_QHF_FH_JSI10i_1	81.647	69.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38869	3947	36569	238348	319881	319881			1	
NLFAFFDMAYQGFASGDGDK	1	Unmodified	2199.9572	0.95715549	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	3	1	2	99.294	91.19	2;3	5.587E-143	51928	160513_QHF_FH_JSI9Kac_6	309.88	288.33			0.56327	0.53408	143.42	4	4	Median	1.3699	1.1707	197.17	2	2	Median	0.16332	0.19441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93475	0.98234	NaN	1	1	Median	721110000	209880000	511240000	199970000	44348000	155620000	253430000	147810000	105620000	91874000	0	91874000	175840000	17721000	158120000	38870	773	36570	238349;238350;238351;238352;238353;238354;238355;238356;238357	319882;319883;319884;319885;319886;319887;319888;319889;319890	319884			9	
NLFAFFDMAYQGFASGDGDK	1	Oxidation (M)	2215.9521	0.95207011	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	97.879	88.436	3	0.00025057	48497	160513_QHF_FH_JSI12Kac_6	82.406	74.414			0.96016	1.023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96016	1.023	NaN	1	1	Median	54858000	31737000	23121000	0	0	0	0	0	0	0	0	0	54858000	31737000	23121000	38871	773	36570	238358	319891	319891		281	1	
NLFASFPTEESSINYTFK	1	Unmodified	2093.9946	0.99458686	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	97.682	97.423	2	6.1176E-11	85344	160511_QHF_FH_JSI11i_2	152.99	131.12			1.0406	1.0802	63.903	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3911	1.4092	84.929	2	2	Median	0.89993	0.98063	61.02	2	2	Median	86128000	49774000	36354000	0	0	0	0	0	0	41241000	22440000	18801000	44888000	27334000	17553000	38872	1685	36571	238359;238360;238361;238362	319892;319893;319894;319895	319894			4	
NLFDNLIEFLQK	1	Unmodified	1492.7926	0.79257999	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.07	103.08	2	0.00022047	89840	160511_QHF_FH_JSI12i_3	141.1	96.786			1.0079	0.98844	47.646	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4846	1.3844	NaN	1	1	Median	0.68425	0.70572	NaN	1	1	Median	88203000	50331000	37871000	0	0	0	0	0	0	38249000	16564000	21685000	49953000	33767000	16186000	38873	5232	36572	238363;238364	319896;319897	319897			2	
NLFEDQNTLTSICEK	1	Unmodified	1810.8407	0.84072875	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								2	3	2	3	70.487	69.757	2	9.5134E-98	63500	160511_QHF_FH_JSI11i_1	256.95	227.99			1.113	1.1571	28.482	10	8	Median	1.0563	0.88042	8.2342	2	2	Median	0.92732	1.1133	45.849	3	3	Plateau	1.1436	1.1232	26.284	2	1	Median	1.1422	1.1698	10.062	3	2	Median	521100000	251280000	269820000	60709000	28687000	32021000	179530000	89684000	89842000	155400000	68966000	86430000	125470000	63944000	61527000	38874	1844	36573	238365;238366;238367;238368;238369;238370;238371;238372;238373;238374	319898;319899;319900;319901;319902;319903;319904;319905;319906;319907;319908;319909	319899			12	
NLFELAR	0	Unmodified	861.47085	0.47085192	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.031	58.107	2	0.040857	50219	160511_QHF_FH_JSI11i_2	49.358	7.8563			4.1034	4.2609	33.521	4	4	Median	4.4362	3.9214	NaN	1	1	Median	3.7956	4.6297	NaN	1	1	Median	3.1806	3.1828	NaN	1	1	Median	6.5459	7.0176	NaN	1	1	Median	174280000	47606000	126670000	30919000	6703700	24215000	35325000	12247000	23078000	67675000	23769000	43906000	40357000	4885900	35471000	38875	5432	36574	238375;238376;238377;238378	319910;319911;319912;319913	319912			4	
NLFEQLVR	0	Unmodified	1017.5607	0.56072956	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.98	70.195	2	0.015474	62370	160511_QHF_FH_JSI10i_2	49.097	10.134			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38876	4634	36575	238379	319914	319914			1	
NLFFSTNIDDAIK	1	Unmodified	1496.7511	0.75110911	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	88.287	87.767	2	5.442E-07	77268	160511_QHF_FH_JSI9i_2	133.89	107.38			0.85787	0.86391	29.764	5	3	Median	1.0488	0.92318	NaN	1	0	Median	0.82306	0.94476	50.976	2	2	Median	0.85787	0.86391	NaN	1	0	Median	0.57302	0.65785	NaN	1	1	Median	191360000	109910000	81451000	31185000	17014000	14171000	44217000	27459000	16758000	61426000	33466000	27961000	54531000	31969000	22562000	38877	440	36576	238380;238381;238382;238383;238384	319915;319916;319917;319918;319919;319920;319921	319918			7	
NLFIGHFHTPK	1	Unmodified	1309.6931	0.69314072	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				56.941	47.765	3	0.00054713	25378	160513_QHF_FH_JSI9Kac_6	66.498	54.115			1.2192	0.99315	NaN	1	0	Median	1.2192	0.99315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15846000	7207700	8638500	15846000	7207700	8638500	0	0	0	0	0	0	0	0	0	38878	2691	36577	238385	319922	319922			1	
NLFILAYNYK	1	Unmodified	1257.6758	0.67575932	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.47	6.89		7	2						10	5	5	5	4	87.001	82.722	2;3	1.5921E-10	40666	160513_QHF_FH_JSI12Kac_6	138.54	98.478			0.75649	0.63289	235.71	17	17	Median	0.33772	0.28304	222.86	4	4	Median	0.78018	0.88862	223.64	5	5	Median	0.98804	0.99144	310.11	4	4	Median	0.81308	0.8938	281.86	4	4	Median	8657200000	4424600000	4232600000	2007200000	993050000	1014100000	2391700000	1370800000	1020900000	2755500000	1265900000	1489700000	1502800000	794910000	707910000	38879	707	36578	238386;238387;238388;238389;238390;238391;238392;238393;238394;238395;238396;238397;238398;238399;238400;238401;238402;238403;238404	319923;319924;319925;319926;319927;319928;319929;319930;319931;319932;319933;319934;319935;319936;319937;319938;319939;319940;319941;319942;319943	319941			21	
NLFLVIFQR	0	Unmodified	1148.6706	0.67061436	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	93.43	85.079	2	1.984E-23	49766	160513_QHF_FH_JSI10Kac_6	181.49	142.71			0.44651	0.50201	236.55	8	8	Median	0.48147	0.40723	343.08	2	2	Median	0.70179	0.83542	309.24	2	2	Median	0.7391	0.69333	326.58	2	2	Median	0.41932	0.44571	254.04	2	2	Median	1585800000	893100000	692720000	324680000	173160000	151520000	641630000	367820000	273800000	404850000	213570000	191270000	214670000	138540000	76128000	38880	2284	36579	238405;238406;238407;238408;238409;238410;238411;238412	319944;319945;319946;319947;319948;319949;319950;319951	319951			8	
NLFNVVDCK	1	Unmodified	1107.5383	0.53827956	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.91	2	6						3		1	3	5	2	62.867	59.132	2	0.0026004	52290	160511_QHF_FH_JSI10i_2	64.04	39.885			1.5336	1.6704	91.885	10	8	Median	0.60014	0.52357	NaN	1	1	Median	1.3187	1.5603	55.387	2	2	Median	1.2271	1.2088	100.45	5	4	Median	3.677	4.1363	4.951	2	1	Median	796820000	377970000	418850000	57163000	33220000	23944000	165720000	81141000	84580000	403470000	201030000	202440000	170460000	62574000	107890000	38881	1867	36580	238413;238414;238415;238416;238417;238418;238419;238420;238421;238422;238423	319952;319953;319954;319955;319956;319957;319958;319959;319960;319961;319962;319963	319963			12	
NLFPSNLVVAAFR	0	Unmodified	1446.7983	0.79833407	1552	P43007	SLC1A4	Neutral amino acid transporter A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		91.754	84.208	2	2.8954E-05	46658	160513_QHF_FH_JSI11Kac_6	96.847	77.085			0.71926	0.75623	13.594	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69664	0.83253	NaN	1	0	Median	0.74261	0.68692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93845000	53096000	40749000	0	0	0	39201000	27056000	12146000	54643000	26040000	28603000	0	0	0	38882	1552	36581	238424;238425	319964;319965	319964			1	
NLFSKYGK	2	Acetyl (K)	997.52328	0.52328142	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	1	0	0	1			By MS/MS		16	0									1			1		57.775	48.053	2	0.035184	26077	160513_QHF_FH_JSI11Kac_6	60.59	33.628			0.15869	0.15058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15869	0.15058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17421000	15626000	1795200	0	0	0	0	0	0	17421000	15626000	1795200	0	0	0	38883	2670;2501	36582	238426	319966	319966			1	
NLFTKTHPQWYPAR	1	Acetyl (K)	1799.9107	0.91073807	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		72.427	63.966	3	0.00036438	34649	160513_QHF_FH_JSI11Kac_6	73.91	56.209			0.62147	0.64692	35.85	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72579	0.83357	NaN	1	1	Median	0.53215	0.50206	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	268990000	175050000	93942000	0	0	0	110950000	66976000	43978000	158040000	108070000	49964000	0	0	0	38884	5141	36583	238427;238428	319967;319968;319969	319968	3322		3	
NLGALYR	0	Unmodified	805.44464	0.44463717	2258;4985	Q07866;Q9NSK0	KLC1;KLC4	Kinesin light chain 1;Kinesin light chain 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	35.241	34.34	2	0.014653	29134	160511_QHF_FH_JSI11i_2	65.897	28.869			0.12966	0.1269	30.209	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.12572	0.15546	NaN	1	1	Median	0.12966	0.1269	NaN	1	1	Median	0.20654	0.22992	NaN	1	1	Median	91678000	84024000	7653900	0	0	0	29359000	27758000	1601100	41952000	39039000	2913200	20366000	17226000	3139700	38885	2258;4985	36584	238429;238430;238431;238432	319970;319971;319972;319973	319972			4	
NLGESEIR	0	Unmodified	916.46141	0.46140945	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	19.973	19.389	2	0.021648	15890	160511_QHF_FH_JSI11i_2	55.531	27.424			0.43808	0.47192	123.81	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66402	0.66554	172.83	2	2	Median	0.43808	0.47192	NaN	1	1	Median	157700000	98540000	59161000	0	0	0	0	0	0	113230000	68198000	45031000	44472000	30342000	14130000	38886	2598	36585	238433;238434;238435	319974;319975;319976	319976			3	
NLGESEIRDAMMAK	1	Unmodified	1563.7385	0.73851229	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	54.307	53.462	3	0.0080269	47027	160511_QHF_FH_JSI10i_2	49.216	40.832			1.6435	2.0157	85.048	3	3	Median	NaN	NaN	NaN	0	0	Median	1.6435	2.0157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0166	1.0839	109.09	2	2	Median	529150000	255190000	273960000	0	0	0	273020000	119310000	153720000	0	0	0	256130000	135890000	120250000	38887	2598	36586	238436;238437;238438	319977;319978;319979	319978			3	
NLGFGMGIEFR	0	Unmodified	1239.607	0.60702783	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	83.662	82.926	2	2.6695E-05	72999	160511_QHF_FH_JSI11i_2	99.568	88.078			0.96083	1.0652	37.915	4	3	Median	0.62881	0.54653	NaN	1	1	Median	0.8048	0.98502	NaN	1	1	Median	1.1471	1.1519	NaN	1	0	Median	1.1644	1.2767	NaN	1	1	Median	153720000	86132000	67591000	42444000	24068000	18376000	23484000	15025000	8459800	56862000	31368000	25495000	30932000	15672000	15260000	38888	5658	36587	238439;238440;238441;238442;238443	319980;319981;319982;319983;319984;319985	319984			6	
NLGFGMGIEFR	0	Oxidation (M)	1255.6019	0.60194245	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	76.566	67.124	2	0.027064	35315	160513_QHF_FH_JSI12Kac_6	56.359	40.73			1.5777	1.6058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5777	1.6058	NaN	1	1	Median	19884000	9709100	10175000	0	0	0	0	0	0	0	0	0	19884000	9709100	10175000	38889	5658	36587	238444	319986	319986			1	
NLGFSPGDREENIR	0	Unmodified	1602.775	0.77503245	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			39.837	38.871	3	0.0017799	34224	160511_QHF_FH_JSI10i_2	49.482	29.246			0.48487	0.59748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48487	0.59748	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66492000	40022000	26470000	0	0	0	66492000	40022000	26470000	0	0	0	0	0	0	38890	678	36588	238445	319987	319987			1	
NLGFTAIPLHGQMSQSK	1	Unmodified	1827.9302	0.93015288	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	65.049	64.443	2;3	2.3129E-32	57177	160511_QHF_FH_JSI11i_3	146.5	58.061			0.93218	1.0429	27.17	5	3	Median	2.1841	1.8692	NaN	1	1	Median	0.83436	1.001	NaN	1	0	Median	1.1501	1.083	NaN	1	0	Median	0.91517	1.0087	4.715	2	2	Median	546830000	244130000	302700000	89153000	34502000	54651000	149820000	66932000	82889000	199090000	92118000	106980000	108760000	50579000	58184000	38891	4640	36589	238446;238447;238448;238449;238450;238451;238452;238453;238454;238455	319988;319989;319990;319991;319992;319993;319994;319995;319996;319997;319998;319999;320000	319992			13	
NLGGVTQESFDLMIK	1	Unmodified	1650.8287	0.8287075	536	O75496	GMNN	Geminin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.813	86.822	2	0.0010899	76360	160511_QHF_FH_JSI11i_2	62.338	44.865			1.0719	1.1146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0719	1.1146	NaN	1	1	Median	5322000	2396900	2925100	0	0	0	0	0	0	0	0	0	5322000	2396900	2925100	38892	536	36590	238456;238457	320001;320002	320002			2	
NLGHWLGMITLAK	1	Unmodified	1452.7911	0.7911402	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.34			14						9	7	6	4	6	92.193	88.869	2;3	8.9985E-13	44481	160513_QHF_FH_JSI10Kac_6	121.76	93.555			2.5376	2.7073	205.3	15	10	Median	1.5857	1.3574	219.84	5	3	Median	8.0998	9.6066	214.6	3	1	Plateau	8.1938	7.7179	237.64	3	2	Median	3.7224	3.9127	244.83	4	4	Median	1164300000	249910000	914440000	278500000	86884000	191620000	554830000	85890000	468940000	180900000	45600000	135300000	150110000	31537000	118580000	38893	21	36591	238458;238459;238460;238461;238462;238463;238464;238465;238466;238467;238468;238469;238470;238471;238472;238473;238474;238475;238476;238477;238478;238479;238480	320003;320004;320005;320006;320007;320008;320009;320010;320011;320012;320013;320014;320015;320016;320017;320018;320019;320020;320021;320022;320023;320024;320025;320026;320027;320028;320029;320030	320028			28	
NLGIEAVPWTADIPLK	1	Unmodified	1735.9509	0.95087155	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.32	101.14	2	4.926E-05	87016	160511_QHF_FH_JSI12i_2	106.32	90.07			1.0943	1.2369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0943	1.2369	NaN	1	1	Median	92377000	47631000	44745000	0	0	0	0	0	0	0	0	0	92377000	47631000	44745000	38894	4736	36592	238481	320031	320031			1	
NLGIESQDVMQQATNAILR	0	Unmodified	2100.0634	0.063351898	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	97.141	96.738	2	0.0004113	83206	160511_QHF_FH_JSI12i_2	96.734	83.533			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3743100	3743100	0	0	0	0	0	0	0	0	0	0	3743100	3743100	0	38895	3216	36593	238482	320032	320032			1	
NLGIGKVSSFEEK	2	Acetyl (K)	1448.7511	0.75110911	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	74.355	63.748	2	0.0026159	34033	160513_QHF_FH_JSI11Kac_5	77.062	40.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2975800	2975800	0	0	0	0	1314000	1314000	0	1661800	1661800	0	0	0	0	38896	1504	36594	238483;238484;238485	320033;320034;320035	320033	1527		3	
NLGIPLGQDAEEK	1	Unmodified	1382.7042	0.70415892	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.132	56.483	2	0.00012499	50156	160511_QHF_FH_JSI9i_1	86.911	74.904			1.3155	1.2677	13.865	3	1	Median	1.4639	1.1835	NaN	1	0	Median	1.262	1.5458	NaN	1	1	Median	1.3155	1.2677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	880830000	434460000	446370000	266430000	134080000	132350000	281800000	129490000	152310000	332600000	170890000	161710000	0	0	0	38897	3071	36595	238486;238487;238488;238489	320036;320037;320038;320039;320040;320041	320041			6	
NLGIVSVTSTDISSLYAK	1	Unmodified	1866.9939	0.99385857	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	94.419	94.036	2	0.00029696	82508	160511_QHF_FH_JSI9i_2	84.566	70.147			3.651	3.8078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.651	3.8078	NaN	1	1	Median	37391000	16275000	21116000	5053400	0	5053400	10095000	4074900	6019800	17835000	11772000	6062700	4407700	427720	3980000	38898	3249	36596	238490;238491;238492;238493;238494;238495	320042;320043;320044;320045;320046;320047	320043			6	
NLGLEELGIELDPR	0	Unmodified	1566.8253	0.82533668	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	96.584	96.306	2	0.00011318	82802	160511_QHF_FH_JSI12i_2	113.24	90.004			0.80254	0.77776	13.243	5	4	Median	0.87984	0.73974	NaN	1	1	Median	0.52567	0.65154	NaN	1	1	Median	0.86823	0.90193	NaN	1	0	Median	0.75292	0.82636	8.5714	2	2	Median	158070000	83614000	74459000	23134000	12913000	10221000	24558000	15018000	9540000	36201000	17957000	18243000	74180000	37725000	36455000	38899	935	36597	238496;238497;238498;238499;238500	320048;320049;320050;320051;320052	320048			5	
NLGLFIVK	1	Unmodified	902.55894	0.55893865	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		6							2	3	2	2	1	77.794	74.944	2	0.0035695	39057	160513_QHF_FH_JSI11Kac_6	87.323	30.042			0.074992	0.077768	232.02	6	6	Median	0.075141	0.063719	NaN	1	1	Median	1.1485	1.4471	389.29	2	2	Median	0.10781	0.10638	78.137	2	2	Median	0.059467	0.065551	NaN	1	1	Median	117030000	91959000	25069000	37159000	26763000	10396000	27174000	14465000	12710000	36878000	35620000	1258200	15817000	15111000	705610	38900	4204	36598	238501;238502;238503;238504;238505;238506;238507;238508	320053;320054;320055;320056;320057;320058;320059;320060	320054			8	
NLGLTPMDQGSLMAAK	1	Unmodified	1645.8168	0.81676261	3020	Q687X5	STEAP4	Metalloreductase STEAP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	72.647	71.982	2	1.7822E-07	65174	160511_QHF_FH_JSI10i_1	141.13	120.35			0.78209	0.76303	49.744	7	7	Median	0.78209	0.70689	NaN	1	1	Median	0.66291	0.79347	60.759	2	2	Median	1.0476	1.0245	52.383	2	2	Median	1.191	1.2662	71.63	2	2	Median	429350000	194690000	234650000	47704000	24739000	22966000	125980000	69435000	56543000	145230000	61542000	83686000	110430000	38978000	71455000	38901	3020	36599	238509;238510;238511;238512;238513;238514;238515;238516	320061;320062;320063;320064;320065;320066;320067;320068	320064			8	
NLGLYVK	1	Unmodified	805.46979	0.46978929	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.77		6	1						2	3	1	3	2	45.949	42.908	2	0.012997	37558	160511_QHF_FH_JSI9i_2	71.949	48.93			4.3474	4.3434	202.24	9	9	Median	11.065	9.4585	256.16	3	3	Median	0.15525	0.19192	NaN	1	1	Median	7.7849	7.9868	158.69	3	3	Plateau	0.95588	1.0621	293.21	2	2	Median	2371100000	1142800000	1228300000	580050000	259010000	321040000	429420000	317520000	111900000	548230000	138510000	409720000	813410000	427770000	385640000	38902	2569	36600	238517;238518;238519;238520;238521;238522;238523;238524;238525	320069;320070;320071;320072;320073;320074;320075;320076;320077;320078;320079	320075			11	
NLGLYVKTR	1	Acetyl (K)	1104.6291	0.62914348	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.481	51.773	2	0.053427	27999	160513_QHF_FH_JSI11Kac_6	50.292	30.151			0.053702	0.052488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.053702	0.052488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6318300	6181300	137000	0	0	0	0	0	0	6318300	6181300	137000	0	0	0	38903	2569	36601	238526	320080	320080			1	
NLGMAVEAWNEEGK	1	Unmodified	1546.7086	0.70859237	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	67.198	66.243	2	1.288E-12	58112	160511_QHF_FH_JSI11i_2	116.24	99.212			4.8413	5.1537	1.9091	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.8631	5.0846	NaN	1	1	Median	4.8197	5.2237	NaN	1	1	Median	140170000	40994000	99173000	20744000	0	20744000	47514000	19050000	28464000	37413000	3217200	34196000	34497000	18727000	15770000	38904	3335	36602	238527;238528;238529;238530;238531;238532;238533	320081;320082;320083;320084;320085;320086;320087;320088;320089;320090;320091	320088			11	
NLGMTDAFELGK	1	Unmodified	1294.6227	0.62273747	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	2	6	6							3	4	4	3	71.606	70.733	2	4.6979E-06	64371	160511_QHF_FH_JSI11i_1	119.53	104.27			1.2675	1.3325	61.344	14	14	Median	1.1954	0.99227	62.368	3	3	Median	1.0466	1.258	63.058	4	4	Median	1.3676	1.334	83.974	4	4	Median	1.7226	1.7134	44.719	3	3	Median	4774200000	1928200000	2846000000	749810000	299440000	450370000	1198300000	519410000	678850000	1780100000	724740000	1055300000	1046100000	384570000	661500000	38905	1425	36603	238534;238535;238536;238537;238538;238539;238540;238541;238542;238543;238544;238545;238546;238547	320092;320093;320094;320095;320096;320097;320098;320099;320100;320101;320102;320103;320104;320105;320106;320107	320093			16	
NLGMTDAFELGK	1	Oxidation (M)	1310.6177	0.61765209	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	56.27	54.903	2	0.022828	47048	160511_QHF_FH_JSI12i_2	47.894	32.232			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38906	1425	36603	238548	320108	320108			1	
NLGQNLWGPHR	0	Unmodified	1290.6582	0.6581522	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.75	0.433		2	6							5	3			43.443	41.957	2;3	4.0623E-05	34318	160511_QHF_FH_JSI9i_3	65.5	59.314			0.98791	0.89781	34.729	7	4	Median	0.97433	0.80549	33.599	4	2	Median	0.98791	1.1405	42.759	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	317250000	154760000	162490000	193000000	77195000	115810000	124250000	77568000	46680000	0	0	0	0	0	0	38907	5200	36604	238549;238550;238551;238552;238553;238554;238555;238556	320109;320110;320111;320112;320113;320114;320115;320116;320117;320118	320114			9	
NLGQPIK	1	Unmodified	768.44939	0.4493882	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.45	4	1	1				2			1	3	2	2	20.389	17.809	2	0.0072838	11558	160513_QHF_FH_JSI11Kac_4	89.673	26.956			0.54084	0.54398	88.736	8	8	Median	0.79756	0.6455	NaN	1	1	Median	0.30221	0.36417	20.279	3	3	Plateau	1.2058	1.1793	123.72	2	2	Median	1.2018	1.2666	105.23	2	2	Median	1720900000	830360000	890500000	123600000	70750000	52845000	672750000	393260000	279490000	326740000	132880000	193860000	597780000	233470000	364310000	38908	1417	36605	238557;238558;238559;238560;238561;238562;238563;238564	320119;320120;320121;320122;320123;320124;320125;320126	320124			8	
NLGSINTELQDVQR	0	Unmodified	1585.806	0.80599822	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.72	0.731	8	7	3							6	5	3	4	60.222	59.423	2	3.2409E-17	51572	160511_QHF_FH_JSI11i_2	210.79	158.86			0.15505	0.149	237.53	15	15	Median	0.93975	0.78062	275.04	4	4	Median	0.785	0.95379	251.07	4	4	Median	0.15286	0.149	245.61	3	3	Median	0.99045	1.0385	284.14	4	4	Median	3651200000	1903000000	1748200000	915010000	424710000	490300000	1082500000	589570000	492970000	822930000	502800000	320140000	830740000	385960000	444780000	38909	520	36606	238565;238566;238567;238568;238569;238570;238571;238572;238573;238574;238575;238576;238577;238578;238579;238580;238581;238582	320127;320128;320129;320130;320131;320132;320133;320134;320135;320136;320137;320138;320139;320140;320141;320142;320143;320144	320142			18	
NLGSLLK	1	Unmodified	743.45414	0.45413923	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS				2	0		2								2				47.565	46.509	2	0.040857	40440	160511_QHF_FH_JSI9i_2	49.358	18.069			1.0555	0.90122	322.78	2	2	Median	1.0555	0.90122	322.78	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93631000	44297000	49335000	93631000	44297000	49335000	0	0	0	0	0	0	0	0	0	38910	1495	36607	238583;238584	320145;320146	320145			2	
NLGTALAELR	0	Unmodified	1056.5928	0.59275797	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	1		2	62.831	61.728	2	0.0047089	52851	160511_QHF_FH_JSI12i_2	64.841	32.231			0.85531	0.88617	346.52	4	4	Median	17.5	15.165	NaN	1	1	Median	0.041802	0.051782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95302	1.0761	445.6	2	2	Median	626800000	361160000	265640000	134490000	23064000	111430000	210420000	195030000	15390000	0	0	0	281880000	143060000	138820000	38911	5616	36608	238585;238586;238587;238588	320147;320148;320149;320150	320147			4	
NLGTIAK	1	Unmodified	715.42284	0.4228391	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	19.723	19.145	2	0.023013	16560	160511_QHF_FH_JSI12i_1	58.981	9.6227			38.753	0.010364	478.64	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41.736	40.508	NaN	1	1	Median	0.59574	0.65324	587.05	2	2	Median	1420000000	868370000	551640000	0	0	0	0	0	0	290270000	13296000	276970000	1129700000	855070000	274670000	38912	1057	36609	238589;238590;238591	320151;320152;320153	320153			3	
NLGVHISR	0	Unmodified	894.50355	0.50354903	3753;3464	Q8WU79;Q8IYB5	SMAP2;SMAP1	Stromal membrane-associated protein 2;Stromal membrane-associated protein 1	no	no	0	0	0	0	By MS/MS				2	0		1								1				23.125	22.143	3	0.03703	18909	160511_QHF_FH_JSI9i_2	30.564	18.517			0.51368	0.43557	NaN	1	1	Median	0.51368	0.43557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9166400	5873500	3292900	9166400	5873500	3292900	0	0	0	0	0	0	0	0	0	38913	3753;3464	36610	238592	320154	320154			1	
NLGVQQSQGWVHYMIHEPEPHILLFR	0	Unmodified	3127.5814	0.58142879	1932	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	85.318	77.735	3;4;5	5.4686E-95	43957	160513_QHF_FH_JSI10Kac_6	229.76	213.65			1.2788	1.1511	20.833	5	0	Median	1.3161	1.1328	2.2648	2	0	Median	1.2969	1.5436	8.6599	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94331	0.98405	NaN	1	0	Median	2204600000	984010000	1220600000	706310000	263280000	443030000	1387000000	656370000	730620000	0	0	0	111280000	64372000	46913000	38914	1932	36611	238593;238594;238595;238596;238597	320155;320156;320157;320158;320159;320160;320161;320162	320160			8	
NLHGDGIALWYTR	0	Unmodified	1514.763	0.7630112	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.58	6.78		5	4						10	4	3	5	7	67.942	62.722	2;3	6.0346E-12	33956	160513_QHF_FH_JSI11Kac_6	143.31	125			1.0748	1.0292	39.507	18	6	Median	1.0778	0.9059	13.405	3	0	Plateau	0.84351	1.0079	22.311	3	0	Median	1.5037	1.4388	37.262	5	1	Median	1.2704	1.3852	50.791	7	5	Median	1913800000	993950000	919890000	185480000	90861000	94615000	846270000	568550000	277720000	543240000	199420000	343820000	338860000	135120000	203740000	38915	2326	36612	238598;238599;238600;238601;238602;238603;238604;238605;238606;238607;238608;238609;238610;238611;238612;238613;238614;238615;238616	320163;320164;320165;320166;320167;320168;320169;320170;320171;320172;320173;320174;320175;320176;320177;320178;320179;320180;320181;320182;320183;320184;320185;320186;320187;320188	320169			26	
NLHIPTMENGPELILR	0	Unmodified	1845.9771	0.97710307	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	84.688	83.86	3	0.00046342	73812	160511_QHF_FH_JSI11i_2	50.653	38.63			1.4595	1.4717	46.525	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0894	1.0591	NaN	1	1	Median	1.9555	2.045	NaN	1	1	Median	16045000	6627200	9417400	0	0	0	0	0	0	8947900	4408100	4539800	7096700	2219100	4877600	38916	286	36613	238617;238618;238619	320189;320190;320191	320191			3	
NLHPQSWTQSNIK	1	Unmodified	1551.7794	0.77938954	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.478	35.35	2	0.0068405	29961	160511_QHF_FH_JSI12i_3	60.434	35.048			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11984000	11984000	0	0	0	0	0	0	0	0	0	0	11984000	11984000	0	38917	2610	36614	238620;238621	320192;320193	320193			2	
NLHQSGFSLSGAQIDDNIPR	0	Unmodified	2168.061	0.061043713	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	65.224	64.532	2;3	1.3896E-33	57309	160511_QHF_FH_JSI11i_3	160.27	152.83			0.88353	1.0172	10.444	5	0	Median	1.3062	1.1087	NaN	1	0	Median	0.86558	1.0422	NaN	1	0	Median	0.97678	0.94779	9.997	2	0	Median	0.77538	0.87671	NaN	1	0	Median	950640000	473470000	477170000	117240000	45382000	71860000	232700000	124370000	108340000	447740000	225870000	221870000	152960000	77844000	75112000	38918	2739	36615	238622;238623;238624;238625;238626;238627	320194;320195;320196;320197;320198;320199;320200	320194			6	
NLHSEISGK	1	Unmodified	983.50361	0.50360861	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	10.994	10.508	2;3	0.00057647	7899	160511_QHF_FH_JSI11i_2	90.709	60.524			0.67079	0.82476	67.505	4	1	Median	NaN	NaN	NaN	0	0	Median	0.67079	0.82476	11.077	2	0	Median	0.50183	0.49428	NaN	1	0	Median	2.1637	2.4376	NaN	1	1	Median	433130000	183400000	249720000	0	0	0	218310000	89038000	129270000	146020000	67656000	78364000	68800000	26708000	42092000	38919	1085	36616	238628;238629;238630;238631	320201;320202;320203;320204	320202			4	
NLHSEISGKR	1	Unmodified	1139.6047	0.60471964	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			9.5888	9.0006	2	0.025652	6764	160511_QHF_FH_JSI10i_3	53.327	35.941			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6736000	6736000	0	0	0	0	6736000	6736000	0	0	0	0	0	0	0	38920	1085	36617	238632	320205	320205			1	
NLHVVFTMNPSSEGLK	1	Unmodified	1771.8927	0.89270474	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9	7		2							2		2		2	71.219	68.06	2;3	4.5791E-06	36621	160513_QHF_FH_JSI10Kac_6	155.86	125.46			0.89979	1.0523	118.89	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37197	0.454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1766	2.4393	NaN	1	1	Median	72035000	39859000	32175000	0	0	0	62932000	36785000	26147000	0	0	0	9102800	3073900	6029000	38921	2517	36618	238633;238634;238635;238636	320206;320207;320208;320209	320209			4	
NLHVVFTMNPSSEGLK	1	Oxidation (M)	1787.8876	0.88761936	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	2	2	3	64.546	55.303	2;3	0.00025506	30303	160513_QHF_FH_JSI10Kac_6	83.37	72.091			0.7491	0.81459	166.97	8	8	Median	0.64126	0.55771	226.64	2	2	Median	1.1062	1.3109	233.99	2	2	Median	0.88822	0.87038	192.88	2	2	Median	0.57763	0.61297	206.92	2	2	Median	272490000	146910000	125580000	90046000	53936000	36110000	70698000	34999000	35699000	46335000	22072000	24263000	65409000	35901000	29509000	38922	2517	36618	238637;238638;238639;238640;238641;238642;238643;238644;238645;238646	320210;320211;320212;320213;320214;320215;320216;320217;320218;320219	320218		1991	10	
NLHYDTFLVIR	0	Unmodified	1389.7405	0.74048484	4644	Q9H0V9	LMAN2L	VIP36-like protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.481	69.11	3	0.0019266	37657	160513_QHF_FH_JSI10Kac_6	47.815	37.266			0.24183	0.27674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.24183	0.27674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12448000	10552000	1896300	0	0	0	12448000	10552000	1896300	0	0	0	0	0	0	38923	4644	36619	238647	320220	320220			1	
NLIAFSEDGSDPYVR	0	Unmodified	1681.7948	0.79476484	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	3	3	2	71.198	70.478	2	2.655E-05	62673	160511_QHF_FH_JSI10i_2	118.48	101.05			1.3159	1.0593	55.175	11	10	Median	1.3159	1.0593	64.34	3	3	Median	1.8322	2.1781	71.821	3	3	Median	1.4183	1.3571	55.531	3	3	Median	0.76225	0.80375	37.214	2	1	Median	601000000	284490000	316510000	129910000	45262000	84643000	148730000	68027000	80702000	232070000	125440000	106620000	90297000	45752000	44545000	38924	6	36620	238648;238649;238650;238651;238652;238653;238654;238655;238656;238657;238658	320221;320222;320223;320224;320225;320226;320227;320228;320229;320230;320231;320232;320233	320233			13	
NLIAPIFLHR	0	Unmodified	1192.7081	0.7080625	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	3	2	4	73.855	72.936	3	5.645E-05	64635	160511_QHF_FH_JSI11i_3	80.688	74.384			1.0532	1.0086	60.953	9	7	Median	0.60062	0.51366	107.21	2	1	Median	0.72419	0.84447	67.987	2	2	Median	1.0532	1.0086	NaN	1	0	Median	0.75832	0.78742	54.614	4	4	Median	185460000	93552000	91910000	24389000	12071000	12319000	36282000	19973000	16310000	30531000	15437000	15094000	94260000	46072000	48188000	38925	2606	36621	238659;238660;238661;238662;238663;238664;238665;238666;238667;238668;238669	320234;320235;320236;320237;320238;320239;320240;320241;320242;320243;320244;320245;320246;320247	320235			14	
NLIDAGVDALR	0	Unmodified	1155.6248	0.62478638	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	2	3	3	66.568	65.756	2	0.0011755	59908	160511_QHF_FH_JSI11i_1	79.07	17.379			0.97874	0.90925	26.497	9	2	Median	1.1496	0.97022	9.1786	2	0	Median	0.70354	0.84536	5.2864	2	0	Median	0.99859	0.99672	3.7983	2	0	Median	0.85792	0.86698	49.6	3	2	Median	2240500000	1161400000	1079000000	394350000	164940000	229400000	529630000	323970000	205660000	560760000	292120000	268640000	755710000	380370000	375340000	38926	1015	36622	238670;238671;238672;238673;238674;238675;238676;238677;238678;238679	320248;320249;320250;320251;320252;320253;320254;320255;320256;320257;320258;320259;320260;320261	320249			14	
NLIDAGVDGLR	0	Unmodified	1141.6091	0.60913632	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.865	58.093	2	0.0085337	51635	160511_QHF_FH_JSI9i_1	59.426	33.689			0.69708	0.61615	20.166	2	2	Median	0.66196	0.53427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73407	0.71059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128700000	63107000	65590000	49603000	29838000	19765000	0	0	0	79094000	33269000	45825000	0	0	0	38927	1182	36623	238680;238681;238682	320262;320263;320264	320264			3	
NLIDEDGNNQWPEGLK	1	Unmodified	1840.8592	0.85915601	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								1	4	2	3	68.097	67.604	2;3	4.7984E-140	61751	160511_QHF_FH_JSI12i_1	269.95	218.03			0.9968	1.0718	31.491	8	3	Median	0.99756	0.82019	NaN	1	0	Median	0.82722	0.98443	19.302	3	2	Plateau	1.267	1.2296	29.54	2	1	Median	0.78084	0.81082	55.926	2	0	Median	1341200000	674690000	666510000	169850000	82815000	87031000	589290000	320770000	268520000	286180000	132190000	154000000	295880000	138920000	156960000	38928	127	36624	238683;238684;238685;238686;238687;238688;238689;238690;238691;238692	320265;320266;320267;320268;320269;320270;320271;320272;320273;320274;320275;320276;320277;320278;320279;320280;320281;320282;320283;320284;320285;320286	320277			22	
NLIDYFVPFLPLEYK	1	Unmodified	1869.9917	0.99167373	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	103.39	103.22	2	9.5103E-08	89153	160511_QHF_FH_JSI12i_2	96.745	80.113			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38929	185	36625	238693	320287	320287			1	
NLIESMQINGSVLK	1	Unmodified	1544.8232	0.82322819	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	78.332	77.643	2	2.1836E-05	68105	160511_QHF_FH_JSI11i_2	124.21	84.358			0.76056	0.85467	50.022	5	2	Median	1.0475	0.91119	NaN	1	1	Median	0.41547	0.49724	76.598	2	1	Median	0.76056	0.76477	NaN	1	0	Median	0.85911	0.96474	NaN	1	0	Median	346470000	186410000	160060000	58020000	25659000	32361000	89170000	56463000	32706000	108490000	55061000	53425000	90791000	49227000	41564000	38930	1205	36626	238694;238695;238696;238697;238698	320288;320289;320290;320291;320292	320291			5	
NLIEVMR	0	Unmodified	873.47422	0.47422274	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		48.426	47.905	2	0.013181	42306	160511_QHF_FH_JSI10i_2	58.981	27.046			0.51717	0.51992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51717	0.51992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	129530000	70573000	58959000	0	0	0	0	0	0	129530000	70573000	58959000	0	0	0	38931	5645	36627	238699;238700	320293;320294	320294			2	
NLIEVMRK	1	Unmodified	1001.5692	0.56918576	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			39.701	38.196	2	0.019492	31824	160511_QHF_FH_JSI10i_3	63.565	45.53			1.7775	1.756	370.92	2	2	Median	0.15267	0.12749	NaN	1	1	Median	20.694	24.187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55733000	12935000	42798000	30366000	12439000	17926000	25367000	495080	24872000	0	0	0	0	0	0	38932	5645	36628	238701;238702;238703	320295;320296;320297	320295			3	
NLIEWLNK	1	Unmodified	1028.5655	0.56548059	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.67		8	4						1	3	3	3	4	79.271	77.813	2	0.0010167	69116	160511_QHF_FH_JSI9i_2	114.78	67.716			10.447	10.747	257.66	13	13	Median	6.7863	5.6094	289.9	3	3	Median	18.725	21.229	340.51	3	3	Median	12.389	12.689	318.7	3	3	Median	5.8426	6.2476	250.1	4	4	Median	2049600000	810170000	1239400000	349310000	148600000	200710000	507470000	232860000	274610000	698800000	261690000	437100000	494040000	167010000	327030000	38933	4027	36629	238704;238705;238706;238707;238708;238709;238710;238711;238712;238713;238714;238715;238716	320298;320299;320300;320301;320302;320303;320304;320305;320306;320307;320308;320309;320310;320311;320312;320313;320314;320315;320316;320317;320318;320319;320320;320321	320308			24	
NLIHGSDSVESAR	0	Unmodified	1383.6743	0.67425577	2375	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		20.876	20.312	2	0.0010415	17535	160511_QHF_FH_JSI10i_2	63.624	35.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38934	2375	36630	238717;238718	320322;320323	320323			2	
NLIIEAVTNLR	0	Unmodified	1254.7296	0.7295858	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				89.667	89.263	2	0.0032067	78621	160511_QHF_FH_JSI9i_2	81.338	51.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5363100	0	5363100	5363100	0	5363100	0	0	0	0	0	0	0	0	0	38935	2305	36631	238719	320324	320324			1	
NLIIYWK	1	Unmodified	948.54329	0.54328858	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		77.376	69.593	2	0.031055	37574	160513_QHF_FH_JSI11Kac_6	72.234	54.848			1.487	1.6012	8.3512	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2818	1.5094	NaN	1	1	Median	1.725	1.6986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81613000	35040000	46572000	0	0	0	48300000	23491000	24809000	33313000	11549000	21763000	0	0	0	38936	1543	36632	238720;238721	320325;320326	320325			2	
NLILAGVK	1	Unmodified	826.52764	0.52763852	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.8	0.4	1	4								2	2		1	49.664	48.708	2	0.0084678	42694	160511_QHF_FH_JSI9i_2	57.281	23.923			3.0339	3.1101	116.12	4	4	Median	3.9341	3.3622	NaN	1	1	Median	0.92451	1.0746	139.27	2	2	Median	NaN	NaN	NaN	0	0	Median	5.1369	5.6798	NaN	1	1	Median	572470000	220650000	351820000	153230000	65511000	87720000	218060000	101140000	116920000	0	0	0	201180000	53999000	147180000	38937	5233	36633	238722;238723;238724;238725;238726	320327;320328;320329;320330;320331	320330			5	
NLILKPGGSLDGMDMLHNFLK	2	Unmodified	2312.2021	0.20209399	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	101.06	101.06	4	8.9871E-10	87673	160511_QHF_FH_JSI12i_3	106.13	97.639			0.92973	0.91255	14.129	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87057	0.82579	NaN	1	0	Median	0.99292	1.0084	NaN	1	0	Median	361400000	162770000	198630000	0	0	0	0	0	0	125810000	52365000	73443000	235590000	110400000	125190000	38938	4551	36634	238727;238728	320332;320333	320333			2	
NLILLVK	1	Unmodified	811.55312	0.55312499	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		6							3	2	2	2	3	70.574	67.753	2	0.020944	58697	160511_QHF_FH_JSI12i_2	60.358	26.62			0.28152	0.30826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28152	0.30826	NaN	1	1	Median	158010000	85721000	72289000	33691000	19047000	14644000	33780000	19045000	14735000	49245000	27135000	22110000	41294000	20494000	20800000	38939	5734	36635	238729;238730;238731;238732;238733;238734;238735;238736;238737	320334;320335;320336;320337;320338;320339;320340;320341;320342	320334			9	
NLILSAFPR	0	Unmodified	1029.5971	0.59711507	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	73.103	72.191	2	0.0012499	63629	160511_QHF_FH_JSI9i_2	78.334	69.472			0.97079	1.0012	21.405	3	1	Median	0.89298	0.75627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97079	1.0012	NaN	1	0	Median	1.006	1.1514	NaN	1	0	Median	210100000	108510000	101600000	49566000	26836000	22730000	0	0	0	93181000	46321000	46860000	67356000	35350000	32006000	38940	21	36636	238738;238739;238740	320343;320344;320345;320346	320344			4	
NLILVVR	0	Unmodified	825.54362	0.54362294	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.08		6					2	7	5	6	4	5	5	64.815	57.499	2	0.0055078	29930	160513_QHF_FH_JSI12Kac_6	90.986	21.553			0.65487	0.67917	132.88	19	15	Median	0.79487	0.67917	122.08	5	3	Median	1.5598	1.8676	139.13	4	3	Median	0.459	0.45287	166.33	5	4	Median	0.29573	0.32308	137.43	5	5	Median	4234600000	1852300000	2382300000	420790000	204290000	216500000	875110000	290430000	584680000	1407900000	608350000	799540000	1530800000	749200000	781570000	38941	2155	36637	238741;238742;238743;238744;238745;238746;238747;238748;238749;238750;238751;238752;238753;238754;238755;238756;238757;238758;238759;238760	320347;320348;320349;320350;320351;320352;320353;320354;320355;320356;320357;320358;320359;320360;320361;320362;320363;320364;320365;320366;320367;320368	320367			22	
NLIMSGYSPEHDVSGISDPFLQVR	0	Oxidation (M)	2676.2854	0.28536592	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	87.113	86.122	3	0.0035945	74399	160511_QHF_FH_JSI12i_2	34.155	26.709			0.72391	0.7655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72391	0.7655	NaN	1	0	Median	14056000	7323100	6732600	0	0	0	0	0	0	0	0	0	14056000	7323100	6732600	38942	369	36638	238761	320369	320369		145	1	
NLIMSGYSPEHDVSGISDPFLQVR	0	Unmodified	2660.2905	0.2904513	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	93.883	93.458	3	3.0133E-17	80701	160511_QHF_FH_JSI12i_2	126.31	122.51			1.0503	1.1136	12.861	4	0	Median	1.0556	0.90326	NaN	1	0	Median	0.85166	1.0579	NaN	1	0	Median	1.1996	1.1722	NaN	1	0	Median	1.045	1.1971	NaN	1	0	Median	480630000	222500000	258130000	87141000	37820000	49321000	110140000	55019000	55118000	147230000	61487000	85744000	136120000	68170000	67948000	38943	369	36638	238762;238763;238764;238765	320370;320371;320372;320373;320374;320375;320376;320377	320371			8	
NLINKLSVVDQK	2	Acetyl (K)	1411.8035	0.80347903	4934	Q9NQZ2	UTP3	Something about silencing protein 10	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.546	69.978	2	0.03235	37092	160513_QHF_FH_JSI11Kac_5	51.927	26.268			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2663400	2663400	0	0	0	0	0	0	0	2663400	2663400	0	0	0	0	38944	4934	36639	238766	320378	320378			1	
NLINPSSLLELFFELFR	0	Unmodified	2051.1092	0.1091631	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.98	100.26	3	1.3555E-32	59430	160513_QHF_FH_JSI10Kac_6	181.69	151.95			0.68142	0.78174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68142	0.78174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111320000	66801000	44520000	0	0	0	111320000	66801000	44520000	0	0	0	0	0	0	38945	5051	36640	238767	320379	320379			1	
NLINQMLTINPAK	1	Unmodified	1468.8072	0.8071842	2439	Q13555;Q13554	CAMK2G;CAMK2B	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.615	82.879	2	4.2055E-06	71699	160511_QHF_FH_JSI12i_2	124.1	80.591			0.1015	0.095249	34.403	4	4	Median	0.12513	0.10636	NaN	1	1	Median	0.14512	0.17498	NaN	1	1	Median	0.082334	0.085302	NaN	1	1	Median	0.073961	0.083455	NaN	1	1	Median	1137700000	1034100000	103550000	202150000	176450000	25700000	231460000	206660000	24804000	416140000	387020000	29129000	287930000	264000000	23920000	38946	2439	36641	238768;238769;238770;238771	320380;320381;320382;320383	320380			4	
NLIPFDQMTIEDLNEAFPETK	1	Unmodified	2464.1832	0.18319226	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	5										2		3	101.87	101.78	2;3	1.2042E-85	92574	160511_QHF_FH_JSI10i_1	250.52	232.1			1.0822	1.1597	20.985	5	2	Median	NaN	NaN	NaN	0	0	Median	1.1398	1.3496	24.53	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2131	1.2944	18.514	3	2	Plateau	1131600000	536870000	594730000	0	0	0	438310000	227710000	210600000	0	0	0	693290000	309150000	384130000	38947	589	36642	238772;238773;238774;238775;238776	320384;320385;320386;320387;320388;320389;320390	320390			7	
NLIPMDPNGLSDPYVK	1	Unmodified	1771.8815	0.88147135	1112	P17252;P05129	PRKCA;PRKCG	Protein kinase C alpha type;Protein kinase C gamma type	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.883	83.419	2	0.0010605	76053	160511_QHF_FH_JSI11i_1	73.624	29.995			2.0732	2.0299	23.321	4	4	Median	1.8935	1.5414	NaN	1	1	Median	2.3035	2.7109	NaN	1	1	Median	2.2591	2.1195	NaN	1	1	Median	1.9027	1.9442	NaN	1	1	Median	220040000	80301000	139740000	35392000	14197000	21194000	56205000	17918000	38287000	71426000	28404000	43022000	57022000	19781000	37240000	38948	1112	36643	238777;238778;238779;238780	320391;320392;320393;320394;320395	320391			5	
NLIYFGFYNFSDLLR	0	Unmodified	1880.9461	0.94612052	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.744	91.246	2	6.3718E-76	51564	160513_QHF_FH_JSI9Kac_6	231.17	190.55			0.88497	0.78897	39.334	4	3	Median	0.79546	0.6678	NaN	1	0	Median	0.8501	1.0101	58.952	2	2	Median	0.98455	0.93213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	595340000	308170000	287170000	207640000	104830000	102810000	323260000	161190000	162070000	64433000	42144000	22289000	0	0	0	38949	2549	36644	238781;238782;238783;238784	320396;320397;320398;320399	320397			4	
NLKASLENSLR	1	Acetyl (K)	1285.699	0.69901396	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		74.661	64.482	2	6.716E-05	35000	160513_QHF_FH_JSI11Kac_6	99.34	48.274			0.3367	0.3294	88.979	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4546	1.6472	NaN	1	0	Median	0.35953	0.35459	10.419	2	0	Median	NaN	NaN	NaN	0	0	Median	60869000	47157000	13712000	0	0	0	2153400	660580	1492800	58715000	46497000	12219000	0	0	0	38950	842	36645	238785;238786;238787	320400;320401;320402;320403;320404	320401	497		5	
NLKLGIHEDSTNR	1	Acetyl (K)	1537.7849	0.78486885	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4		2	5	1	46.76	36.864	2;3	2.9306E-05	20030	160513_QHF_FH_JSI11Kac_6	99.522	82.155			0.28694	0.2793	72.188	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1895	1.3984	NaN	1	0	Median	0.28694	0.2793	4.2675	3	0	Median	0.25112	0.27675	NaN	1	0	Median	189000000	148290000	40714000	0	0	0	16941000	6364200	10577000	162560000	135360000	27197000	9502000	6561600	2940300	38951	898	36646	238788;238789;238790;238791;238792;238793;238794;238795	320405;320406;320407;320408;320409;320410;320411;320412;320413;320414;320415	320408	651		11	
NLKPIKPMQFLGDEETVRK	3	Acetyl (K)	2284.2249	0.22493792	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	1	0	0	3			By MS/MS		16	0									1			1		76.815	67.49	4	0.001621	36850	160513_QHF_FH_JSI11Kac_6	73.783	58.191			0.27814	0.27009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27814	0.27009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26720000	24518000	2202600	0	0	0	0	0	0	26720000	24518000	2202600	0	0	0	38952	1144	36647	238796	320416	320416	1006		1	
NLKWLDLK	2	Acetyl (K)	1070.6124	0.61243078	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.184	72.869	2	0.012618	40117	160513_QHF_FH_JSI11Kac_6	75.378	42.538			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49786000	49786000	0	0	0	0	0	0	0	49786000	49786000	0	0	0	0	38953	3968	36648	238797	320417	320417	3019		1	
NLLALDK	1	Unmodified	785.4647	0.46470391	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			47.338	46.376	2	0.045207	40870	160511_QHF_FH_JSI10i_2	48.561	6.9089			0.1676	0.20172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1676	0.20172	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56222000	43135000	13087000	0	0	0	56222000	43135000	13087000	0	0	0	0	0	0	38954	5161	36649	238798	320418	320418			1	
NLLALIHR	0	Unmodified	948.58688	0.58688473	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			67.029	63.517	2	0.0092315	34812	160513_QHF_FH_JSI10Kac_6	77.058	47.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70213000	46183000	24030000	46004000	21974000	24030000	24209000	24209000	0	0	0	0	0	0	0	38955	238	36650	238799;238800;238801	320419;320420;320421	320421			3	
NLLDRDTFSK	1	Unmodified	1207.6197	0.619701	3387	Q86YQ8	CPNE8	Copine-8	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	38.642	38.552	3	0.029502	33836	160511_QHF_FH_JSI11i_3	31.478	14.565			1.046	1.0227	52.612	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77146	0.70501	NaN	1	0	Median	1.4182	1.4836	NaN	1	0	Median	100590000	51005000	49588000	0	0	0	0	0	0	51675000	25352000	26322000	48919000	25653000	23266000	38956	3387	36651	238802;238803	320422	320422			1	
NLLDSMAR	0	Unmodified	918.4593	0.45930096	4172	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		23.349	22.676	2	0.058096	19378	160511_QHF_FH_JSI9i_2	35.494	0			1.0014	0.92042	30.505	2	0	Median	1.3631	1.142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73573	0.74183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143820000	57285000	86531000	74268000	19353000	54914000	0	0	0	69548000	37931000	31617000	0	0	0	38957	4172	36652	238804;238805	320423	320423			1	
NLLDSMVLITDK	1	Unmodified	1360.7272	0.72720254	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.12	94.576	2	0.00015689	81434	160511_QHF_FH_JSI12i_2	81.865	64.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38958	1419	36653	238806	320424	320424			1	
NLLDVIDQAR	0	Unmodified	1155.6248	0.62478638	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.589	75.956	2	0.0084445	66699	160511_QHF_FH_JSI11i_2	60.899	26.939			14.317	15.211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.317	15.211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39075000	2397500	36677000	0	0	0	0	0	0	39075000	2397500	36677000	0	0	0	38959	2229	36654	238807	320425	320425			1	
NLLESLK	1	Unmodified	815.47527	0.4752686	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	49.996	48.861	2	0.026669	43075	160511_QHF_FH_JSI10i_2	56.547	15.045			0.62207	0.7609	101.49	3	3	Median	0.56287	0.49695	NaN	1	1	Median	0.62207	0.7609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.2109	3.4297	NaN	1	1	Median	97472000	50292000	47180000	32972000	17995000	14977000	38421000	23189000	15232000	0	0	0	26080000	9107800	16972000	38960	5053	36655	238808;238809;238810	320426;320427;320428	320428			3	
NLLESYHVPELIK	1	Unmodified	1553.8453	0.84534384	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							5	2	3	2	79.616	78.739	2;3	1.3831E-11	68201	160511_QHF_FH_JSI12i_2	135.37	114.14			1.0876	1.1138	20.255	12	5	Median	1.2683	1.1053	18.968	5	3	Median	0.90826	1.1243	2.5104	2	0	Median	1.094	1.1224	37.752	3	2	Median	1.0035	1.1121	10.749	2	0	Median	2074300000	1068200000	1006100000	429680000	237230000	192450000	441890000	233940000	207940000	717540000	364360000	353180000	485210000	232640000	252570000	38961	1544	36656	238811;238812;238813;238814;238815;238816;238817;238818;238819;238820;238821;238822	320429;320430;320431;320432;320433;320434;320435;320436;320437;320438;320439;320440;320441;320442;320443;320444;320445;320446;320447;320448;320449;320450;320451;320452;320453;320454;320455;320456;320457;320458;320459	320431			31	
NLLGSATNAILNMVNIAANILGAK	1	Unmodified	2395.3257	0.3257146	5253	Q9UBS9	SUCO	SUN domain-containing ossification factor	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		106.13	96.708	3	7.2716E-22	55213	160513_QHF_FH_JSI11Kac_6	122.3	113.91			0.98412	0.96766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98412	0.96766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12694000	5134000	7560400	0	0	0	0	0	0	12694000	5134000	7560400	0	0	0	38962	5253	36657	238823	320460;320461	320461			2	
NLLHHILSGK	1	Unmodified	1130.656	0.65602693	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	no	no	0	0	0	0				By MS/MS	3	0			1										1	46.221	45.979	3	0.021244	39280	160511_QHF_FH_JSI12i_3	29.926	23.694			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38963	1577	36658	238824	320462	320462			1	
NLLHQDAVDLFR	0	Unmodified	1439.7521	0.75211216	1891	P57105	SYNJ2BP	Synaptojanin-2-binding protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.47	68.171	3	0.0013876	58742	160511_QHF_FH_JSI12i_2	55.291	44.293			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38964	1891	36659	238825	320463	320463			1	
NLLHSLQSSGIGSK	1	Unmodified	1439.7732	0.77324153	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.09	3.78		1	9						1	2	3	3	3	48.354	47.706	2;3	3.7696E-07	39027	160511_QHF_FH_JSI9i_3	88.441	68.654			7.4757	7.0499	39.261	5	5	Median	NaN	NaN	NaN	0	0	Median	3.2793	3.828	NaN	1	1	Median	8.8208	8.2567	22.347	2	2	Median	5.8753	5.8506	40.419	2	2	Median	1032200000	230140000	802050000	0	0	0	98159000	31602000	66557000	451090000	113500000	337590000	482940000	85031000	397910000	38965	3860	36660	238826;238827;238828;238829;238830;238831;238832;238833;238834;238835;238836	320464;320465;320466;320467;320468;320469;320470;320471;320472;320473;320474;320475	320472			12	
NLLHVTDTGVGMTR	0	Unmodified	1512.7719	0.77186132	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.56		15	6						3	5	5	9	5	51.949	50.786	2;3	3.4582E-06	44582	160511_QHF_FH_JSI9i_2	130.01	105.66			0.41625	0.39039	145.09	19	19	Median	0.90802	0.77524	122.2	4	4	Median	0.82453	1.002	174.28	4	4	Median	0.41625	0.39039	181.23	7	7	Median	0.37915	0.4024	115.34	4	4	Median	6794600000	3734600000	3059900000	1383000000	771160000	611830000	1907800000	1177500000	730350000	2544900000	1189800000	1355100000	958850000	596190000	362660000	38966	1057	36661	238837;238838;238839;238840;238841;238842;238843;238844;238845;238846;238847;238848;238849;238850;238851;238852;238853;238854;238855;238856;238857;238858;238859;238860	320476;320477;320478;320479;320480;320481;320482;320483;320484;320485;320486;320487;320488;320489;320490;320491;320492;320493;320494;320495;320496;320497;320498;320499;320500;320501	320487			26	
NLLHVTDTGVGMTR	0	Oxidation (M)	1528.7668	0.76677595	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	1	2	4	2	41.59	40.768	2;3	6.1879E-07	34895	160511_QHF_FH_JSI12i_2	93.058	74.278			2.6171	2.6397	106.26	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9075	1.9092	45.819	2	2	Median	0.31375	0.33084	NaN	1	1	Median	235780000	120380000	115410000	10442000	10442000	0	38860000	24695000	14165000	172480000	74609000	97866000	14007000	10632000	3375400	38967	1057	36661	238861;238862;238863;238864;238865;238866;238867;238868;238869	320502;320503;320504;320505;320506;320507;320508;320509;320510	320503		689	9	
NLLHVTDTGVGMTREELVK	1	Oxidation (M)	2127.0994	0.099403054	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	1	3	3	55.506	54.975	3;4	0.00016078	48663	160511_QHF_FH_JSI11i_3	65.097	56.165			1.6017	1.6346	90.912	9	9	Median	1.5589	1.347	143.98	2	2	Median	1.2285	1.5061	NaN	1	1	Median	3.0793	2.9437	134.97	3	3	Median	2.8969	2.886	58.743	3	3	Plateau	1241400000	500800000	740610000	102750000	38805000	63944000	135610000	55258000	80347000	607730000	279630000	328100000	395330000	127110000	268220000	38968	1057	36662	238870;238871;238872;238873;238874;238875;238876;238877;238878	320511;320512;320513;320514;320515;320516;320517;320518;320519;320520;320521;320522	320513		689	12	
NLLHVTDTGVGMTREELVK	1	Unmodified	2111.1045	0.10448843	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.96		25	18						15	12	14	17	15	66.298	63.4	2;3;4	1.1367E-14	54720	160511_QHF_FH_JSI12i_3	172.1	113.43			0.41433	0.44104	204.26	44	44	Median	1.018	0.8789	153.12	8	8	Median	0.3246	0.37329	201.65	11	11	Median	1.1417	1.1586	249.32	12	12	Median	0.27656	0.30228	208.41	13	13	Median	17595000000	8742400000	8853000000	2021000000	934510000	1086500000	3299100000	1631300000	1667800000	6828100000	3412700000	3415500000	5447100000	2763900000	2683200000	38969	1057	36662	238879;238880;238881;238882;238883;238884;238885;238886;238887;238888;238889;238890;238891;238892;238893;238894;238895;238896;238897;238898;238899;238900;238901;238902;238903;238904;238905;238906;238907;238908;238909;238910;238911;238912;238913;238914;238915;238916;238917;238918;238919;238920;238921;238922;238923;238924;238925;238926;238927;238928;238929;238930;238931;238932;238933;238934;238935;238936	320523;320524;320525;320526;320527;320528;320529;320530;320531;320532;320533;320534;320535;320536;320537;320538;320539;320540;320541;320542;320543;320544;320545;320546;320547;320548;320549;320550;320551;320552;320553;320554;320555;320556;320557;320558;320559;320560;320561;320562;320563;320564;320565;320566;320567;320568;320569;320570;320571;320572;320573;320574;320575;320576;320577;320578;320579;320580;320581;320582;320583;320584;320585;320586;320587;320588;320589;320590;320591;320592;320593;320594;320595;320596;320597;320598;320599;320600;320601;320602;320603	320595			81	
NLLIFENLIDLK	1	Unmodified	1443.8337	0.83371653	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.32	5.54		8	7						4	5	6	4	4	101.44	99.631	2	1.0168E-19	50903	160513_QHF_FH_JSI9Kac_6	181.53	131.06			0.24165	0.23131	215.29	9	9	Median	0.57315	0.49647	165.86	2	2	Median	9.8264	12.059	300.94	3	3	Median	0.24165	0.23131	171.75	3	3	Median	0.16534	0.18491	NaN	1	1	Median	3329000000	1597100000	1731800000	611730000	288270000	323460000	964250000	529070000	435180000	1243500000	542710000	700810000	509450000	237080000	272370000	38970	2094	36663	238937;238938;238939;238940;238941;238942;238943;238944;238945;238946;238947;238948;238949;238950;238951;238952;238953;238954;238955	320604;320605;320606;320607;320608;320609;320610;320611;320612;320613;320614;320615;320616;320617;320618;320619;320620;320621;320622	320618			19	
NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK	2	Unmodified	4058.1737	0.17370098	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	4	5	2	2	101	93.076	3;4;5	8.2132E-81	53055	160513_QHF_FH_JSI9Kac_6	242.19	228.55			0.53322	0.52758	197.59	10	6	Median	0.7587	0.64057	218.04	4	3	Median	3.8654	4.6237	304.64	3	3	Median	0.37404	0.35576	26.73	2	0	Median	0.62393	0.64763	NaN	1	0	Median	5155200000	3146300000	2008900000	983290000	523380000	459910000	3520600000	2259800000	1260800000	389130000	294160000	94967000	262190000	68963000	193230000	38971	3914	36664	238956;238957;238958;238959;238960;238961;238962;238963;238964;238965;238966;238967;238968	320623;320624;320625;320626;320627;320628;320629;320630;320631;320632;320633	320626			11	
NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK	2	2 Oxidation (M)	4090.1635	0.16353022	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	2	1		By MS/MS			16	0									1		1			98.566	92.845	5	1.1458E-05	54344	160513_QHF_FH_JSI10Kac_6	64.701	51.359			0.32016	0.37902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32016	0.37902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89281000	82489000	6791900	0	0	0	89281000	82489000	6791900	0	0	0	0	0	0	38972	3914	36664	238969	320634	320634		2348;2349	1	
NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK	2	Oxidation (M)	4074.1686	0.1686156	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	1	1		By MS/MS			16	0									3		3			99.667	93.946	4;5	1.9689E-25	55327	160513_QHF_FH_JSI10Kac_6	135.45	102.96			0.1998	0.22811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1998	0.22811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	245400000	161070000	84335000	0	0	0	245400000	161070000	84335000	0	0	0	0	0	0	38973	3914	36664	238970;238971;238972	320635;320636;320637	320637		2348;2349	3	
NLLILYDAIGTLADSVGHHLNQPEYIQK	1	Unmodified	3134.64	0.6400491	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	1	2	100.85	95.996	4	3.2487E-29	51776	160513_QHF_FH_JSI9Kac_6	188.22	164.83			0.84706	0.84188	31.286	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.0503	NaN	1	0	Median	0.64386	0.6748	NaN	1	0	Median	216660000	162770000	53891000	66018000	66018000	0	82516000	82516000	0	12015000	5496300	6518900	56116000	8743300	47372000	38974	205	36665	238973;238974;238975;238976;238977	320638;320639;320640;320641;320642;320643;320644	320640			7	
NLLIQNKPGDDPNK	2	Unmodified	1564.8209	0.82092001	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	3	2	31.494	30.644	2;3	0.00093421	25991	160511_QHF_FH_JSI12i_2	67.964	52.372			1.1134	1.2262	100.33	8	8	Median	1.2225	1.0238	89.388	2	2	Median	0.65182	0.78594	NaN	1	1	Median	0.79464	0.80192	131.7	3	3	Plateau	1.003	1.1314	157.24	2	2	Median	491880000	260410000	231470000	137120000	60470000	76654000	56011000	38277000	17734000	198790000	107570000	91214000	99963000	54093000	45869000	38975	1443	36666	238978;238979;238980;238981;238982;238983;238984;238985	320645;320646;320647;320648;320649;320650;320651;320652	320646			8	
NLLLAGAK	1	Unmodified	798.49634	0.49633839	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	40.184	39.018	2	0.021447	33295	160511_QHF_FH_JSI12i_2	55.676	20.475			0.50504	0.5771	22.309	2	2	Median	NaN	NaN	NaN	0	0	Median	0.40276	0.49288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63328	0.67572	NaN	1	1	Median	85942000	52932000	33011000	0	0	0	45147000	30607000	14541000	0	0	0	40795000	22325000	18470000	38976	5222	36667	238986;238987	320653;320654	320653			2	
NLLLALVGEVGELAELFQWK	1	Unmodified	2241.2409	0.24090556	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.53	100.81	3	3.1013E-57	59729	160513_QHF_FH_JSI10Kac_6	191.64	176.94			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	189180000	97037000	92145000	0	0	0	189180000	97037000	92145000	0	0	0	0	0	0	38977	4760	36668	238988	320655;320656	320655			2	
NLLLEPSLEAK	1	Unmodified	1225.6918	0.69180331	3645	Q8NEZ2	VPS37A	Vacuolar protein sorting-associated protein 37A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.26	66.951	2	0.015514	60649	160511_QHF_FH_JSI10i_1	44.863	29.201			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38978	3645	36669	238989	320657	320657			1	
NLLLLANSTEEQQK	1	Unmodified	1599.8468	0.84680041	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.55		6						1		1	2	2	2	67.535	65.256	2	6.6128E-13	56866	160511_QHF_FH_JSI11i_2	204.17	168.46			0.62255	0.66381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62255	0.66381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172070000	68838000	103230000	20903000	0	20903000	24703000	593780	24109000	70408000	38728000	31680000	56054000	29517000	26537000	38979	475	36670	238990;238991;238992;238993;238994;238995;238996	320658;320659;320660;320661;320662;320663;320664;320665	320661			8	
NLLLLGK	1	Unmodified	769.50617	0.5061748	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			61.787	60.928	2	0.034141	53864	160511_QHF_FH_JSI10i_2	51.572	0			0.043558	0.052752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.043558	0.052752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57516000	50172000	7344700	0	0	0	57516000	50172000	7344700	0	0	0	0	0	0	38980	4024	36671	238997	320666	320666			1	
NLLLSGAQLEASR	0	Unmodified	1370.7518	0.75177781	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.491	62.458	2	0.00038496	54359	160511_QHF_FH_JSI11i_2	70.685	52.373			0.5389	0.70335	5.0378	3	3	Plateau	0.83142	0.70335	NaN	1	1	Median	0.53369	0.65981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63836	0.72878	NaN	1	1	Median	195090000	119380000	75713000	49621000	29040000	20580000	77894000	49380000	28513000	0	0	0	67579000	40959000	26620000	38981	4503	36672	238998;238999;239000;239001	320667;320668;320669;320670;320671	320669			5	
NLLNHPWIMQDYNYPVEWQSK	1	Unmodified	2674.2638	0.26384262	2559	Q14680	MELK	Maternal embryonic leucine zipper kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	86.065	78.316	3	2.1973E-37	41391	160513_QHF_FH_JSI12Kac_6	168.27	160.82			1.3236	1.2195	29.733	4	1	Median	1.4232	1.2399	NaN	1	0	Median	0.63886	0.74861	NaN	1	1	Median	1.2359	1.1995	NaN	1	0	Median	1.4176	1.5092	NaN	1	0	Median	330730000	159890000	170840000	82527000	36560000	45968000	93337000	53567000	39770000	100180000	45233000	54943000	54693000	24529000	30164000	38982	2559	36673	239002;239003;239004;239005;239006	320672;320673;320674;320675;320676;320677	320675			6	
NLLNHPWIMQDYNYPVEWQSK	1	Oxidation (M)	2690.2588	0.25875724	2559	Q14680	MELK	Maternal embryonic leucine zipper kinase	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	82.899	73.457	3	0.00024097	39066	160513_QHF_FH_JSI12Kac_6	81.967	74.773			1.6104	1.7022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6104	1.7022	NaN	1	1	Median	18336000	12173000	6162300	0	0	0	0	0	0	0	0	0	18336000	12173000	6162300	38983	2559	36673	239007	320678	320678		2007	1	
NLLNLDVIKK	2	Unmodified	1168.718	0.71795849	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		66.08	65.519	3	0.019501	57172	160511_QHF_FH_JSI11i_2	31.843	22.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38984	3676	36674	239008	320679	320679			1	
NLLNSVIGR	0	Unmodified	984.57163	0.5716286	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	58.756	57.837	2	0.0079395	49651	160511_QHF_FH_JSI12i_2	61.679	21.612			0.65431	0.69205	5.1784	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6561	0.66717	NaN	1	1	Median	0.65253	0.71786	NaN	1	1	Median	143120000	72246000	70871000	0	0	0	0	0	0	84693000	43125000	41569000	58424000	29122000	29302000	38985	3221	36675	239009;239010	320680;320681	320680			2	
NLLPATLQLIDTYASFTR	0	Unmodified	2036.0942	0.094241321	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		102.66	102.58	2	1.1787E-06	90361	160511_QHF_FH_JSI11i_2	112.08	57.3			1.1776	1.289	42.701	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4403	1.7433	NaN	1	1	Median	0.9628	0.95306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44813000	19722000	25091000	0	0	0	18518000	5638400	12880000	26295000	14083000	12212000	0	0	0	38986	2947	36676	239011;239012	320682;320683	320682			2	
NLLQDVLR	0	Unmodified	969.56073	0.56072956	3493	Q8N0W3	FUK	L-fucose kinase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.215	71.93	2	0.011304	62087	160511_QHF_FH_JSI12i_2	53.968	25.456			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38987	3493	36677	239013	320684	320684			1	
NLLQELK	1	Unmodified	856.50182	0.5018177	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.84		5						1		1	1	3	1	52.14	51.254	2	0.014406	43926	160511_QHF_FH_JSI12i_2	66.799	13.245			0.37828	0.37338	109.84	5	5	Median	0.37828	0.32194	NaN	1	1	Median	0.29843	0.36904	NaN	1	1	Median	0.8974	0.90897	125.82	2	2	Median	2.7098	3.0427	NaN	1	1	Median	635170000	328540000	306630000	82002000	49703000	32299000	99830000	62401000	37429000	343100000	165230000	177870000	110240000	51207000	59028000	38988	4989	36678	239014;239015;239016;239017;239018;239019	320685;320686;320687;320688;320689;320690	320685			6	
NLLQEQLNSLSNDIKK	2	Unmodified	1856.0003	0.0003409361	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	81.477	80.856	3	5.8666E-06	70030	160511_QHF_FH_JSI12i_2	85.619	69.984			8.5297	8.7425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.5297	8.7425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	227620000	7957200	219670000	0	0	0	0	0	0	227620000	7957200	219670000	0	0	0	38989	4564	36679	239020;239021	320691;320692	320691			2	
NLLQNIH	0	Unmodified	850.4661	0.4661009	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS		6.33	6.13		2						1		2		1		43.519	37.753	2	0.011874	33110	160511_QHF_FH_JSI9i_2	60.344	48.783			1.2523	1.1474	120.11	2	2	Median	3.1589	2.6826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49646	0.49073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83788000	36255000	47532000	76300000	32062000	44238000	0	0	0	7488000	4193600	3294400	0	0	0	38990	4109	36680	239022;239023;239024	320693;320694;320695	320694			3	
NLLQVDLTK	1	Unmodified	1042.6023	0.60226003	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	62.84	61.981	2	0.00076029	53329	160511_QHF_FH_JSI12i_2	85.676	38.594			1.6635	1.9216	91.501	4	4	Median	NaN	NaN	NaN	0	0	Median	1.498	1.7952	NaN	1	1	Median	3.2523	3.1205	NaN	1	1	Median	0.80703	0.89022	118.44	2	2	Median	258230000	122110000	136120000	0	0	0	54371000	24226000	30145000	35662000	12080000	23582000	168200000	85800000	82397000	38991	1215;1121	36681	239025;239026;239027;239028	320696;320697;320698;320699	320698			4	
NLLQVDLTKR	1	Acetyl (K)	1240.7139	0.71393574	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	1	0	0	1			By MS/MS		15	0								1				1		76.085	65.421	2	0.012958	34871	160513_QHF_FH_JSI11Kac_5	68.557	30.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1152300	1152300	0	0	0	0	0	0	0	1152300	1152300	0	0	0	0	38992	1215;1121	36682	239029	320700	320700	970		1	
NLLSLGHNNIVR	0	Unmodified	1348.7575	0.75753189	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	53.519	52.782	2;3	0.00015561	44935	160511_QHF_FH_JSI12i_3	99.653	81.341			0.27349	0.29027	80.347	6	6	Median	0.33627	0.295	NaN	1	1	Median	0.19899	0.23582	27.087	2	2	Median	0.3007	0.30149	NaN	1	1	Median	0.36301	0.39422	169.99	2	2	Median	248200000	186030000	62174000	33322000	21980000	11342000	62544000	51152000	11392000	53072000	43408000	9664300	99262000	69487000	29775000	38993	2226	36683	239030;239031;239032;239033;239034;239035;239036;239037;239038	320701;320702;320703;320704;320705;320706;320707;320708;320709	320708			9	
NLLSVAYK	1	Unmodified	906.51747	0.51746776	2051;1990;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917;P62258	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH;YWHAE	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta;14-3-3 protein epsilon	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.35	8	8	6		1	4	5	8	4	10	13	9	12	56.134	50.463	2	0.0016273	44268	160511_QHF_FH_JSI11i_3	86.953	36.914			1.8946	2.0359	145.35	41	39	Median	1.7409	1.4361	146.41	8	8	Median	0.35453	0.39908	154.7	13	12	Median	3.1352	2.9458	169.07	9	8	Median	1.8946	2.0359	130.78	11	11	Median	75292000000	34303000000	40990000000	14748000000	6706000000	8042000000	16518000000	8729300000	7788500000	25313000000	10987000000	14326000000	18714000000	7880800000	10833000000	38994	1976;1288;1384;2051;1385;2224;1990	36684	239039;239040;239041;239042;239043;239044;239045;239046;239047;239048;239049;239050;239051;239052;239053;239054;239055;239056;239057;239058;239059;239060;239061;239062;239063;239064;239065;239066;239067;239068;239069;239070;239071;239072;239073;239074;239075;239076;239077;239078;239079;239080;239081;239082	320710;320711;320712;320713;320714;320715;320716;320717;320718;320719;320720;320721;320722;320723;320724;320725;320726;320727;320728;320729;320730;320731;320732;320733;320734;320735;320736;320737;320738;320739;320740;320741;320742;320743;320744;320745;320746;320747;320748;320749;320750;320751;320752;320753;320754;320755;320756;320757;320758;320759;320760;320761;320762;320763;320764;320765;320766;320767;320768;320769;320770;320771;320772;320773;320774;320775;320776;320777;320778	320711			69	
NLLSVAYKNVIGAR	1	Acetyl (K)	1558.8831	0.88312633	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			85.258	79.591	2	5.2935E-09	44561	160513_QHF_FH_JSI10Kac_6	121.08	63.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38995	1990	36685	239083	320779	320779	2011		1	
NLLSVAYKNVVGAR	1	Acetyl (K)	1544.8675	0.86747627	2051;1384;1976;2224	P61981;P31946;P63104;Q04917	YWHAG;YWHAB;YWHAZ;YWHAH	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta	no	no	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		83.784	76.329	2;3	5.9259E-11	41557	160513_QHF_FH_JSI11Kac_6	128.67	92.715			0.53046	0.61728	134.65	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.5841	1.889	158.18	2	1	Median	0.54702	0.51554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	437960000	289070000	148900000	0	0	0	197950000	112600000	85346000	240020000	176460000	63551000	0	0	0	38996	1976;1384;2051;2224	36686	239084;239085;239086;239087	320780;320781;320782;320783;320784	320780	1327		4	
NLLSVAYKNVVGGR	1	Acetyl (K)	1530.8518	0.85182621	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		83.837	74.521	2	4.8663E-05	41058	160513_QHF_FH_JSI11Kac_6	144.65	107.54			0.085679	0.082637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.085679	0.082637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30698000	28005000	2692700	0	0	0	0	0	0	30698000	28005000	2692700	0	0	0	38997	1288	36687	239088	320785	320785	1215		1	
NLLTAAADAIER	0	Unmodified	1256.6725	0.67246486	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	78.576	77.805	2	0.00011347	67358	160511_QHF_FH_JSI12i_2	87.363	57.109			0.97936	0.89487	46.036	6	4	Median	1.0643	0.89507	NaN	1	0	Median	0.92223	1.1397	79.366	2	2	Median	1.2887	1.2897	51.716	2	2	Median	0.77375	0.84804	NaN	1	0	Median	436370000	226150000	210220000	50189000	28750000	21438000	122470000	70508000	51960000	200950000	93442000	107510000	62758000	33447000	29312000	38998	1406	36688	239089;239090;239091;239092;239093;239094	320786;320787;320788;320789;320790;320791;320792;320793	320787			8	
NLLTGETEADPEMIK	1	Unmodified	1659.8026	0.80255233	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.414	62.784	2	1.3854E-09	57199	160511_QHF_FH_JSI12i_1	175.21	147.89			0.74885	0.74655	19.365	4	0	Median	0.81611	0.68041	NaN	1	0	Median	0.69524	0.81913	NaN	1	0	Median	0.58005	0.56205	NaN	1	0	Median	0.80659	0.85942	NaN	1	0	Median	968710000	519400000	449310000	204840000	113750000	91093000	232990000	132130000	100860000	275990000	157110000	118880000	254900000	116420000	138480000	38999	751	36689	239095;239096;239097;239098	320794;320795;320796;320797;320798;320799;320800;320801;320802	320797			9	
NLLTPLMEK	1	Unmodified	1057.5842	0.58416712	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							3	1	2	1	67.721	66.877	2	0.002875	58211	160511_QHF_FH_JSI11i_2	72.607	33.831			0.4364	0.44651	88.008	6	6	Median	1.0662	0.91337	95.558	2	2	Median	0.34421	0.429	NaN	1	1	Median	0.98577	0.98158	141.06	2	2	Median	0.34334	0.38345	NaN	1	1	Median	657890000	376790000	281100000	158870000	83238000	75635000	103320000	68716000	34605000	287720000	157370000	130360000	107970000	67467000	40504000	39000	344	36690	239099;239100;239101;239102;239103;239104;239105	320803;320804;320805;320806;320807;320808;320809;320810	320808			8	
NLLTPLMEKFK	2	Acetyl (K)	1374.7581	0.75810874	344	O43592	XPOT	Exportin-T	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		91.919	82.558	2	0.00063121	46424	160513_QHF_FH_JSI11Kac_6	89.548	53.604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33429000	33429000	0	0	0	0	0	0	0	33429000	33429000	0	0	0	0	39001	344	36691	239106	320811	320811	172		1	
NLLTVTSSDEMMK	1	Unmodified	1467.6949	0.69491614	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.37	2.83	8	7	3				1			5	5	4	5	64.455	63.015	2	3.1859E-06	54011	160511_QHF_FH_JSI12i_2	122.42	104.99			1.015	0.89497	101.02	17	14	Median	1.0849	0.89497	85.699	5	4	Median	0.59986	0.68427	137.47	4	3	Median	1.0895	1.1163	110.11	3	2	Median	0.57541	0.64717	106.36	5	5	Median	4000400000	1862800000	2137600000	876290000	385260000	491030000	916190000	510150000	406040000	1146000000	503590000	642460000	1061900000	463810000	598080000	39002	2094	36692	239107;239108;239109;239110;239111;239112;239113;239114;239115;239116;239117;239118;239119;239120;239121;239122;239123;239124;239125	320812;320813;320814;320815;320816;320817;320818;320819;320820;320821;320822;320823;320824;320825;320826;320827;320828;320829;320830;320831;320832;320833	320815			22	
NLLTVTSSDEMMK	1	Oxidation (M)	1483.6898	0.68983076	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.57	4.27	1	5					1				2	2	3	52.716	51.779	2	0.0017082	45862	160511_QHF_FH_JSI10i_1	94.465	75.685			0.75644	0.86351	23.289	4	4	Median	NaN	NaN	NaN	0	0	Median	0.73987	0.85519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54018	0.87191	27.248	3	3	Plateau	204530000	113550000	90987000	0	0	0	98566000	54151000	44415000	25974000	10864000	15110000	79993000	48531000	31462000	39003	2094	36692	239126;239127;239128;239129;239130;239131;239132	320834;320835;320836;320837;320838;320839;320840	320838		1772;1773	7	
NLLTVTSSDEMMK	1	2 Oxidation (M)	1499.6847	0.68474538	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	2	0				By MS/MS	14	0							1						1	50.963	40.547	2	0.020911	23269	160513_QHF_FH_JSI12Kac_4	63.283	48.311			0.4581	0.48612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4581	0.48612	NaN	1	1	Median	1543200	1239100	304130	0	0	0	0	0	0	0	0	0	1543200	1239100	304130	39004	2094	36692	239133	320841	320841		1772;1773	1	
NLLVAFR	0	Unmodified	831.49667	0.49667274	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		62.008	61.273	2	0.047642	53148	160511_QHF_FH_JSI11i_2	48.115	15.645			1.382	1.2826	31.362	2	2	Median	1.8381	1.6011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.039	1.0275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68420000	28521000	39899000	24300000	9298700	15002000	0	0	0	44119000	19222000	24897000	0	0	0	39005	4258	36693	239134;239135	320842;320843	320843			2	
NLLVSGWWGFVR	0	Unmodified	1432.7616	0.76155464	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.389	86.015	2	9.1993E-19	50442	160513_QHF_FH_JSI10Kac_6	147.95	121.43			0.84828	0.86932	12.121	4	0	Median	1.2138	1.0174	NaN	1	0	Median	0.67374	0.80435	NaN	1	0	Median	0.97663	0.93954	NaN	1	0	Median	0.7368	0.7934	NaN	1	0	Median	1042500000	530330000	512210000	203170000	107770000	95403000	419590000	200610000	218980000	273420000	141280000	132140000	146350000	80673000	65674000	39006	2571	36694	239136;239137;239138;239139	320844;320845;320846;320847;320848;320849	320849			6	
NLLVSVQSR	0	Unmodified	1014.5822	0.58219329	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		51.078	41.358	2	0.046937	22448	160513_QHF_FH_JSI11Kac_6	39.305	9.9284			1.0771	1.035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0771	1.035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5463900	2041600	3422300	0	0	0	0	0	0	5463900	2041600	3422300	0	0	0	39007	5458	36695	239140	320850	320850			1	
NLLYIYPQSLNFANR	0	Unmodified	1824.9523	0.95226853	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	1	2	2	95.611	93.916	2	1.0947E-06	84995	160511_QHF_FH_JSI11i_2	129.7	104.49			0.66841	0.70839	41.493	5	5	Median	NaN	NaN	NaN	0	0	Median	0.53064	0.63003	NaN	1	1	Median	0.99797	0.97421	57.328	2	2	Median	0.8601	0.97719	45.493	2	2	Median	73087000	33982000	39105000	10923000	0	10923000	15521000	11439000	4082500	25571000	11650000	13921000	21072000	10894000	10179000	39008	4181	36696	239141;239142;239143;239144;239145;239146	320851;320852;320853;320854;320855;320856;320857;320858	320855			8	
NLLYVADSYNHK	1	Unmodified	1435.7096	0.70957864	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		51.427	50.694	2	1.9513E-05	43782	160511_QHF_FH_JSI11i_2	90.827	64.313			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39009	3588	36697	239147;239148	320859;320860	320859			2	
NLMEIVK	1	Unmodified	845.46807	0.46807473	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	54.086	53.11	2	0.048713	45455	160511_QHF_FH_JSI12i_2	43.124	1.6214			1.7855	1.6723	73.146	3	2	Median	1.7855	1.5604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6893	1.6723	NaN	1	1	Median	5.2705	5.7263	NaN	1	0	Median	130880000	41493000	89383000	32160000	11823000	20336000	0	0	0	65766000	23687000	42079000	32951000	5983000	26968000	39010	179	36698	239149;239150;239151	320861;320862;320863	320861			3	
NLMFLVLR	0	Unmodified	1004.5841	0.58410754	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.71		3	2						7	2	3	4	3	91.786	86.98	2	0.00080332	46180	160513_QHF_FH_JSI10Kac_6	105.12	86.386			0.058456	0.058308	325.88	12	12	Median	1.625	1.3733	486.49	2	2	Median	0.038583	0.048133	409.17	3	3	Median	18.286	17.439	381.43	4	4	Linear	0.040531	0.042747	43.227	3	3	Median	10337000000	4829400000	5507200000	2062800000	820110000	1242600000	3765700000	1799100000	1966500000	3959900000	1715900000	2244000000	548240000	494210000	54032000	39011	375	36699	239152;239153;239154;239155;239156;239157;239158;239159;239160;239161;239162;239163	320864;320865;320866;320867;320868;320869;320870;320871;320872;320873;320874;320875	320875			12	
NLMFLVLR	0	Oxidation (M)	1020.579	0.57902216	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								3	6	3	2	2	2	81.91	72.751	2	0.00050172	38337	160513_QHF_FH_JSI12Kac_6	127.84	110.48			0.97685	0.8327	153.15	9	8	Median	0.97685	0.8327	233.09	3	2	Median	1.5807	1.8866	167.14	2	2	Median	1.7459	1.6751	159.08	2	2	Median	1.514	1.6033	135.08	2	2	Median	2487700000	1015700000	1472100000	861150000	435010000	426130000	532520000	167950000	364570000	292230000	72278000	219950000	801850000	340430000	461420000	39012	375	36699	239164;239165;239166;239167;239168;239169;239170;239171;239172	320876;320877;320878;320879;320880;320881;320882;320883;320884;320885	320883		148	10	
NLMIETTEDTIKK	2	Unmodified	1534.7913	0.79125936	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	53.028	51.643	2	3.1579E-08	44213	160511_QHF_FH_JSI12i_2	101.95	74.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39013	4	36700	239173	320886	320886			1	
NLMNAVVQTVK	1	Unmodified	1215.6645	0.66454271	1421	P35221;Q9UI47	CTNNA1;CTNNA3	Catenin alpha-1;Catenin alpha-3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.5	4.72		3	2					1		3	2	1		66.349	63.474	2	8.1557E-06	55521	160511_QHF_FH_JSI11i_2	112.36	80.003			0.76319	0.71061	170.43	4	4	Median	0.60839	0.52225	207.14	2	2	Median	3.1535	3.8978	NaN	1	1	Median	0.22078	0.22349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	569300000	341370000	227940000	117390000	86068000	31325000	182480000	58924000	123560000	269430000	196370000	73055000	0	0	0	39014	1421	36701	239174;239175;239176;239177;239178;239179	320887;320888;320889;320890;320891;320892	320891			6	
NLMTSEIHNTVK	1	Unmodified	1385.6973	0.6972994	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	3	1	36.779	36.056	2;3	9.1184E-05	30779	160511_QHF_FH_JSI11i_2	104.52	79.668			0.6082	0.6659	47.667	5	5	Median	NaN	NaN	NaN	0	0	Median	0.53781	0.6659	NaN	1	1	Median	1.4463	1.4804	53.272	3	3	Median	0.6082	0.65351	NaN	1	1	Median	181890000	84949000	96940000	0	0	0	19760000	13594000	6166200	145960000	59338000	86624000	16167000	12017000	4149800	39015	316	36702	239180;239181;239182;239183;239184	320893;320894;320895;320896;320897	320896			5	
NLMVQCFPPHYEIFK	1	Unmodified	1921.9219	0.92189638	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.176	62.108	2	0.0071699	55189	160511_QHF_FH_JSI9i_1	50.353	32.986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39016	433	36703	239185	320898	320898			1	
NLNEDDTFLVFSK	1	Unmodified	1540.7409	0.74093835	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	81.495	81.018	2	0.00011555	73677	160511_QHF_FH_JSI11i_1	105.17	84.867			0.98137	0.9215	54.871	5	3	Median	1.1075	0.9215	NaN	1	0	Median	0.38009	0.44367	NaN	1	1	Median	0.98137	0.9501	NaN	1	0	Median	0.89848	0.92847	87.347	2	2	Median	249750000	132870000	116890000	45158000	21157000	24002000	47889000	31928000	15961000	60756000	27144000	33612000	95950000	52639000	43311000	39017	4551	36704	239186;239187;239188;239189;239190;239191	320899;320900;320901;320902;320903;320904	320899			6	
NLNGHSIGQYR	0	Unmodified	1257.6214	0.62143234	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.75	0.433		1	3								3		1	21.876	20.672	2;3	0.0064072	17032	160511_QHF_FH_JSI10i_3	53.683	48.717			3.1574	3.4815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.1574	3.4815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29491000	8084100	21407000	0	0	0	29491000	8084100	21407000	0	0	0	0	0	0	39018	1712	36705	239192;239193;239194;239195	320905;320906;320907;320908	320906			4	
NLNGTLHELLR	0	Unmodified	1278.7044	0.70443369	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	3	1	60.545	60.2	3	0.00037217	52142	160511_QHF_FH_JSI12i_2	57.175	43.366			3.1345	2.8272	165.77	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1345	2.8272	165.77	3	3	Median	NaN	NaN	NaN	0	0	Median	142920000	35286000	107630000	0	0	0	28748000	0	28748000	114170000	35286000	78885000	0	0	0	39019	1837	36706	239196;239197;239198;239199;239200	320909;320910;320911;320912;320913	320911			5	
NLNHSLPSDFTFQNMNSK	1	Unmodified	2092.9636	0.96363785	2643	Q15208	STK38	Serine/threonine-protein kinase 38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	65.077	64.189	3	0.00016465	56865	160511_QHF_FH_JSI10i_2	72.359	66.719			1.2819	1.2772	58.069	5	5	Median	0.60464	0.51223	NaN	1	1	Median	0.96393	1.1591	75.943	2	2	Median	1.2819	1.2772	NaN	1	1	Median	1.4667	1.646	NaN	1	1	Median	208500000	111790000	96717000	40858000	29257000	11600000	95427000	50980000	44447000	42932000	18206000	24726000	29289000	13345000	15944000	39020	2643	36707	239201;239202;239203;239204;239205	320914;320915;320916;320917;320918	320918			5	
NLNHVSYGR	0	Unmodified	1058.5257	0.52574104	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		13.698	13.297	2	0.0040136	10462	160511_QHF_FH_JSI11i_2	80.455	71.241			2.4	2.7167	63.577	2	2	Median	NaN	NaN	NaN	0	0	Median	3.4753	4.2588	NaN	1	1	Median	1.6574	1.733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123610000	52130000	71481000	0	0	0	45317000	15821000	29496000	78293000	36309000	41985000	0	0	0	39021	762	36708	239206;239207	320919;320920	320919			2	
NLNLIFIVLETGR	0	Unmodified	1500.8664	0.86641364	4344	Q9BQ15	NABP2	SOSS complex subunit B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			98.72	90.724	2	1.3784E-06	51534	160513_QHF_FH_JSI9Kac_6	132.32	88.811			2.458	2.1073	170.08	3	3	Plateau	0.53487	0.46085	214.98	2	2	Median	1.4957	1.7275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157270000	58447000	98826000	100380000	48728000	51657000	56888000	9719000	47169000	0	0	0	0	0	0	39022	4344	36709	239208;239209;239210	320921;320922;320923	320921			3	
NLNLNDESQHGLLMQLLK	1	Unmodified	2079.0783	0.078273681	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	2	3	93.461	93.006	3	0.00014311	80244	160511_QHF_FH_JSI12i_3	74.89	64.969			0.84768	0.88314	51.565	5	5	Median	NaN	NaN	NaN	0	0	Median	0.43131	0.53526	NaN	1	1	Median	1.5785	1.4918	NaN	1	1	Median	0.84768	0.88314	48.44	3	3	Median	114860000	63373000	51487000	0	0	0	30540000	20798000	9742400	15932000	5404900	10527000	68388000	37171000	31217000	39023	5327	36710	239211;239212;239213;239214;239215;239216	320924;320925;320926;320927;320928;320929	320929			6	
NLNNSNLFSPVNR	0	Unmodified	1487.7481	0.74808942	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	55.014	53.993	2	2.6024E-07	46716	160511_QHF_FH_JSI11i_2	161.99	141.68			0.95627	1.1273	46.502	7	6	Median	1.0455	0.88459	51.116	2	2	Median	0.68849	0.83357	45.43	2	2	Median	1.1025	1.1273	NaN	1	0	Median	0.80519	0.88334	87.524	2	2	Median	583760000	323240000	260520000	130230000	67089000	63139000	159080000	86105000	72979000	138660000	80675000	57983000	155790000	89370000	66420000	39024	1790	36711	239217;239218;239219;239220;239221;239222;239223	320930;320931;320932;320933;320934;320935;320936;320937;320938	320936			9	
NLNPEDIDQLITISGMVIR	0	Unmodified	2140.1198	0.11980414	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	102.37	102.26	2;3	3.1286E-18	88165	160511_QHF_FH_JSI12i_2	203.04	179.93			1.0889	1.1099	17.456	7	1	Median	1.3664	1.1672	NaN	1	0	Median	0.92988	1.1596	23.992	2	1	Median	0.98909	0.97958	10.111	2	0	Median	1.1399	1.2805	20.223	2	0	Median	1137000000	551540000	585420000	87438000	45388000	42050000	174620000	86209000	88414000	476580000	230980000	245590000	398320000	188960000	209360000	39025	1409	36712	239224;239225;239226;239227;239228;239229;239230	320939;320940;320941;320942	320939			4	
NLNPVFGGSGPALTGLR	0	Unmodified	1668.8948	0.89475365	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.876	80.093	2	1.7632E-05	70519	160511_QHF_FH_JSI11i_2	107.53	83.853			0.82731	0.64976	22.926	4	0	Linear	1.6516	1.3687	NaN	1	0	Median	0.70804	0.86671	NaN	1	0	Median	0.83581	0.8524	NaN	1	0	Median	0.8189	0.87888	NaN	1	0	Median	143390000	72433000	70960000	25554000	9618400	15935000	32978000	17527000	15451000	58929000	30892000	28037000	25933000	14396000	11537000	39026	1501	36713	239231;239232;239233;239234	320943;320944;320945;320946	320946			4	
NLNTLCWAIGSISGAMHEEDEK	1	Unmodified	2474.1206	0.12060878	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.61	85.889	3	0.049207	49012	160513_QHF_FH_JSI10Kac_6	31.97	23.978			1.6373	1.9433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6373	1.9433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44162000	28297000	15865000	0	0	0	44162000	28297000	15865000	0	0	0	0	0	0	39027	231	36714	239235	320947	320947			1	
NLNYLHLDYNFNLKPVK	2	Unmodified	2104.1106	0.11056009	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	83.437	83.246	3;4	7.6255E-05	72376	160511_QHF_FH_JSI12i_3	80.609	61.574			0.24607	0.24736	44.891	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24607	0.24736	44.891	2	2	Median	134810000	79677000	55131000	0	0	0	0	0	0	0	0	0	134810000	79677000	55131000	39028	3101	36715	239236;239237;239238	320948;320949;320950	320950			3	
NLPDEEIFQQLNQLNSLHQETIMK	1	Unmodified	2881.428	0.42800742	5085	Q9NX08	COMMD8	COMM domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.19	101.07	3	9.307E-08	88763	160511_QHF_FH_JSI11i_2	71.857	58.127			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87473000	0	87473000	0	0	0	0	0	0	87473000	0	87473000	0	0	0	39029	5085	36716	239239	320951	320951			1	
NLPEEYELK	1	Unmodified	1133.5605	0.56045479	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.921	46.241	2	0.0019789	42050	160511_QHF_FH_JSI12i_1	66.692	49.916			1.0477	1.0213	10.873	4	0	Linear	1.5182	1.2627	NaN	1	0	Median	0.98599	1.1495	NaN	1	0	Median	0.99655	0.97296	NaN	1	0	Median	1.1016	1.1544	NaN	1	0	Median	865050000	384820000	480230000	163120000	61461000	101660000	244370000	89192000	155180000	257610000	144660000	112950000	199950000	89516000	110440000	39030	1778	36717	239240;239241;239242;239243	320952	320952			1	
NLPEGVAMEVTK	1	Unmodified	1286.654	0.6540376	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	56.767	56.147	2	9.8774E-05	50758	160511_QHF_FH_JSI11i_1	90.05	70.779			0.84209	0.88415	82.132	4	1	Median	0.20748	0.18072	NaN	1	1	Median	0.86193	1.0035	NaN	1	0	Median	0.8227	0.79877	NaN	1	0	Median	0.96544	0.97866	NaN	1	0	Median	676840000	389990000	286850000	31679000	25906000	5773300	196890000	120260000	76631000	270110000	150420000	119690000	178170000	93408000	84760000	39031	2106	36718	239244;239245;239246;239247;239248	320953;320954;320955;320956;320957;320958;320959	320954			7	
NLPENENNETGLENVINK	1	Unmodified	2039.976	0.97597668	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	60.002	59.273	2	0.00042449	53962	160511_QHF_FH_JSI12i_1	80.96	48.462			1.1012	1.0777	38.785	3	3	Median	0.77188	0.63588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1012	1.0777	NaN	1	1	Median	1.3311	1.3546	NaN	1	1	Median	68889000	30681000	38208000	24038000	13353000	10685000	0	0	0	26375000	11024000	15352000	18475000	6304100	12171000	39032	3429	36719	239249;239250;239251	320960;320961;320962	320961			3	
NLPFDFTWK	1	Unmodified	1166.576	0.57604528	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.663	1	4	5							2	3	3	2	93.856	93.489	2	0.00013513	82350	160511_QHF_FH_JSI9i_2	90.657	72.671			0.90455	0.93915	16.679	10	3	Median	0.99334	0.83481	21.366	2	0	Median	0.65418	0.76946	17.335	3	1	Median	1.0782	1.124	15.155	3	2	Plateau	0.91468	0.96741	8.905	2	0	Median	2735200000	1284000000	1451200000	446930000	193350000	253580000	583790000	338370000	245420000	962460000	399400000	563060000	741980000	352880000	389110000	39033	1765	36720	239252;239253;239254;239255;239256;239257;239258;239259;239260;239261	320963;320964;320965;320966;320967;320968;320969;320970;320971;320972;320973;320974;320975;320976;320977;320978;320979;320980;320981;320982;320983;320984;320985;320986;320987;320988	320977			26	
NLPFDFTWKMLK	2	Acetyl (K)	1580.8061	0.80612157	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		96.643	87.236	2	8.4697E-05	49620	160513_QHF_FH_JSI11Kac_6	101.3	74.622			0.30654	0.29907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30654	0.29907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93905000	69859000	24046000	0	0	0	0	0	0	93905000	69859000	24046000	0	0	0	39034	1765	36721	239262	320989	320989	1782		1	
NLPFLIEDYEEQPGLQPHIK	1	Unmodified	2379.2111	0.21106199	3600	Q8NBP0	TTC13	Tetratricopeptide repeat protein 13	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.512	94.969	3	0.056426	81727	160511_QHF_FH_JSI12i_2	16.752	12.4			0.52663	0.55306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52663	0.55306	NaN	1	0	Median	16520000	9896900	6623300	0	0	0	0	0	0	0	0	0	16520000	9896900	6623300	39035	3600	36722	239263	320990	320990			1	
NLPFLIK	1	Unmodified	843.52182	0.52182486	3305	Q86TB9	PATL1	Protein PAT1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								1	2			74.44	73.668	2	0.032473	65465	160511_QHF_FH_JSI10i_2	52.683	27.685			0.48294	0.61943	75.95	3	3	Plateau	2.9172	2.5268	NaN	1	1	Median	0.81175	0.99043	75.426	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51702000	25992000	25710000	12068000	3620400	8447900	39634000	22372000	17262000	0	0	0	0	0	0	39036	3305	36723	239264;239265;239266	320991;320992;320993	320993			3	
NLPFSVENK	1	Unmodified	1046.5397	0.53965977	1087	P15954	COX7C	Cytochrome c oxidase subunit 7C, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.41	5	4	1				3	4		3	5	4	5	55.739	50.733	2	0.00027048	44745	160511_QHF_FH_JSI10i_2	96.367	48.618			0.91747	0.93004	36.108	17	7	Median	0.91747	0.78274	28.65	3	2	Median	0.9327	1.1053	39.645	5	2	Median	1.2495	1.2411	36.079	4	1	Median	0.78591	0.84182	35.187	5	2	Median	2650900000	1232100000	1418700000	141220000	66392000	74832000	511370000	287770000	223600000	781200000	321720000	459480000	1217100000	556240000	660810000	39037	1087	36724	239267;239268;239269;239270;239271;239272;239273;239274;239275;239276;239277;239278;239279;239280;239281;239282;239283	320994;320995;320996;320997;320998;320999;321000;321001;321002;321003;321004;321005;321006;321007;321008;321009;321010;321011	321011			18	
NLPGLVQEGEPFSEEATLFTK	1	Unmodified	2305.1478	0.14779303	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	6	9								3	4	3	5	101.15	101.04	2;3	1.2591E-162	88858	160511_QHF_FH_JSI9i_2	305.4	278.3			0.94487	1.0494	17.834	15	5	Median	1.243	1.0573	8.9366	3	1	Median	0.98913	1.1767	18.846	4	1	Linear	0.86406	0.87426	7.1644	3	1	Plateau	1.1272	1.2184	23.617	5	2	Median	3461400000	1741800000	1719600000	635330000	270490000	364850000	782540000	439770000	342770000	713660000	380000000	333660000	1329800000	651550000	678280000	39038	3213	36725	239284;239285;239286;239287;239288;239289;239290;239291;239292;239293;239294;239295;239296;239297;239298	321012;321013;321014;321015;321016;321017;321018;321019;321020;321021;321022;321023;321024;321025;321026;321027;321028;321029;321030;321031	321025			20	
NLPIYSEEIVEMYK	1	Unmodified	1726.8488	0.84877424	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	5	2	2	92.056	91.574	2	3.9111E-30	81122	160511_QHF_FH_JSI10i_2	193.22	183.73			0.84602	0.91344	33.12	9	4	Median	0.80513	0.68068	NaN	1	0	Median	0.81271	0.94999	42.156	4	2	Median	1.1098	1.1097	33.472	2	1	Median	0.91618	1.0028	16.811	2	1	Median	1522300000	778370000	743920000	215190000	114120000	101070000	463420000	241580000	221840000	462610000	226250000	236360000	381060000	196420000	184650000	39039	1436	36726	239299;239300;239301;239302;239303;239304;239305;239306;239307;239308	321032;321033;321034;321035;321036;321037;321038;321039;321040;321041;321042;321043;321044;321045;321046;321047;321048;321049;321050;321051;321052;321053;321054;321055;321056	321053			25	
NLPIYSEEIVEMYK	1	Oxidation (M)	1742.8437	0.84368886	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	81.801	80.677	2	0.0056476	69762	160511_QHF_FH_JSI12i_2	77.593	61.704			2.9481	3.2868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9481	3.2868	NaN	1	1	Median	28737000	9357500	19379000	0	0	0	0	0	0	0	0	0	28737000	9357500	19379000	39040	1436	36726	239309	321057	321057		1104	1	
NLPIYSENIIEMYR	0	Unmodified	1753.8709	0.87090667	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.968	92.52	2	0.018786	81299	160511_QHF_FH_JSI11i_2	44.188	29.769			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39041	1437	36727	239310	321058	321058			1	
NLPLADQGSSHHITVK	1	Unmodified	1715.8955	0.89548193	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	3	6	3	37.148	36.599	2;3;4	1.9745E-07	32268	160511_QHF_FH_JSI10i_2	96.64	71.255			0.94096	0.98605	35.046	10	1	Median	1.166	0.99647	NaN	1	0	Median	0.86589	1.0534	14.531	2	0	Median	0.77326	0.76746	54.742	4	1	Median	1.1967	1.2281	18.528	3	0	Median	1812900000	922950000	889910000	153140000	67078000	86057000	457980000	283380000	174600000	722410000	336290000	386120000	479330000	236200000	243130000	39042	1085	36728	239311;239312;239313;239314;239315;239316;239317;239318;239319;239320;239321;239322;239323;239324	321059;321060;321061;321062;321063;321064;321065;321066;321067;321068;321069;321070;321071;321072;321073;321074;321075	321072			15	
NLPLGWDGKPIPYWLYK	2	Unmodified	2059.0931	0.093119109	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		2	2						4	1	2	3	2	95.747	91.569	3	1.9064E-06	89528	160511_QHF_FH_JSI10i_2	107.98	93.054			0.95945	0.93608	38.834	8	1	Median	0.60717	0.51811	NaN	1	0	Median	0.76989	0.91903	47.774	2	0	Median	1.0134	1.0268	25.281	3	0	Median	1.148	1.1684	44.891	2	1	Median	966030000	483400000	482630000	147100000	74913000	72189000	240680000	119480000	121210000	388420000	197930000	190490000	189820000	91086000	98738000	39043	2319	36729	239325;239326;239327;239328;239329;239330;239331;239332	321076;321077;321078;321079;321080;321081;321082;321083;321084;321085;321086;321087;321088;321089	321082			14	
NLPLPPPPPPR	0	Unmodified	1193.6921	0.69207809	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.98	11	7	1				7	2		6	7	7	8	60.186	56.172	2;3	3.4288E-07	50379	160511_QHF_FH_JSI10i_1	137	88.721			1.1039	0.66754	20.435	25	5	Linear	1.2667	1.093	15.469	5	0	Median	0.86939	1.017	28.738	7	2	Median	1.1118	1.0946	13.988	7	0	Median	0.95641	1.0378	18.509	6	3	Median	4712100000	2302400000	2409700000	936840000	396860000	539980000	1080800000	582940000	497820000	1139700000	545090000	594570000	1554900000	777500000	777370000	39044	1975	36730	239333;239334;239335;239336;239337;239338;239339;239340;239341;239342;239343;239344;239345;239346;239347;239348;239349;239350;239351;239352;239353;239354;239355;239356;239357;239358;239359;239360	321090;321091;321092;321093;321094;321095;321096;321097;321098;321099;321100;321101;321102;321103;321104;321105;321106;321107;321108;321109;321110;321111;321112;321113;321114;321115;321116;321117;321118;321119;321120;321121;321122;321123;321124;321125;321126;321127;321128;321129;321130;321131;321132;321133;321134;321135;321136;321137;321138;321139;321140;321141;321142;321143;321144;321145;321146;321147;321148;321149;321150;321151;321152;321153;321154;321155;321156;321157;321158;321159;321160;321161;321162;321163;321164;321165;321166;321167;321168;321169	321125			80	
NLPNVIINEK	1	Unmodified	1152.6503	0.65027285	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.542	56.186	2	0.052205	48159	160511_QHF_FH_JSI12i_2	42.718	21.816			0.34636	0.36324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34636	0.36324	NaN	1	1	Median	17070000	12768000	4301900	0	0	0	0	0	0	0	0	0	17070000	12768000	4301900	39045	4472	36731	239361	321170	321170			1	
NLPPEEQMISALPDIK	1	Unmodified	1793.9233	0.92333617	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	89.595	89.161	2;3	8.1807E-06	79388	160511_QHF_FH_JSI9i_1	122.42	83.275			0.85745	0.96884	16.399	8	2	Linear	1.1606	0.96884	1.8584	2	0	Median	0.99561	1.1781	32.724	2	1	Median	1.0421	1.0116	2.8278	2	1	Median	0.85863	0.89643	2.6685	2	0	Median	618870000	306050000	312820000	119480000	52938000	66540000	151970000	80773000	71202000	170780000	77084000	93694000	176630000	95250000	81383000	39046	279	36732	239362;239363;239364;239365;239366;239367;239368;239369;239370	321171;321172;321173;321174;321175;321176;321177;321178;321179;321180;321181;321182;321183;321184;321185;321186;321187;321188;321189;321190	321187			20	
NLPPLTEAQK	1	Unmodified	1109.6081	0.60807369	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	41.839	40.922	2	0.024986	36214	160511_QHF_FH_JSI9i_1	48.423	25.404			0.42127	0.39557	48.649	2	1	Median	0.33706	0.28043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52653	0.55798	NaN	1	0	Median	322410000	205230000	117180000	116220000	74312000	41912000	0	0	0	0	0	0	206190000	130920000	75270000	39047	5261	36733	239371;239372	321191;321192;321193	321193			3	
NLPPSGAVPVTGIPPHVVK	1	Unmodified	1878.0727	0.072718018	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	1	3	66.916	66.031	3	8.446E-05	57663	160511_QHF_FH_JSI11i_2	78.794	74.573			0.94889	0.99498	5.7848	5	5	Median	1.1674	0.99498	NaN	1	1	Median	0.77509	0.95626	0.41168	2	2	Median	1.0766	1.0915	NaN	1	1	Median	0.94889	1.0452	NaN	1	1	Median	916190000	587070000	329120000	147890000	90016000	57878000	314130000	229740000	84393000	257610000	160370000	97243000	196560000	106950000	89604000	39048	2381	36734	239373;239374;239375;239376;239377;239378;239379;239380	321194;321195;321196;321197;321198;321199;321200;321201;321202;321203;321204;321205;321206;321207;321208;321209;321210;321211;321212	321203			19	
NLPQSVIENVGGK	1	Unmodified	1353.7252	0.72522871	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	57.405	56.451	2	0.00019792	48848	160511_QHF_FH_JSI11i_2	80.763	55.988			1.2247	1.1178	50.642	5	3	Median	0.91232	0.76792	53.097	2	2	Median	1.511	1.8766	NaN	1	0	Median	1.2247	1.2519	NaN	1	0	Median	0.61323	0.67136	NaN	1	1	Median	128900000	69959000	58939000	49913000	27286000	22627000	19335000	8297500	11037000	40311000	23601000	16710000	19338000	10774000	8564000	39049	1724	36735	239381;239382;239383;239384;239385;239386	321213;321214;321215;321216;321217;321218;321219	321216			7	
NLPQYVSNELLEEAFSVFGQVER	0	Unmodified	2667.318	0.31804626	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	2	2	2	1	101.64	96.005	2;3	5.3974E-38	55952	160513_QHF_FH_JSI10Kac_6	166.35	142.2			1.1243	1.2525	52.297	7	4	Median	1.0582	0.88492	49.131	2	2	Median	0.94732	1.1148	26.522	2	1	Median	1.4589	1.4792	19.232	2	0	Median	0.36008	0.37951	NaN	1	1	Median	1218800000	663390000	555440000	267790000	143860000	123930000	672960000	335970000	336990000	91785000	33715000	58071000	186300000	149850000	36449000	39050	2644	36736	239387;239388;239389;239390;239391;239392;239393	321220;321221;321222;321223;321224;321225;321226;321227	321225			8	
NLPSLFK	1	Unmodified	817.46979	0.46978929	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	62.164	61.123	2	0.016662	53817	160511_QHF_FH_JSI9i_2	62.717	23.499			1.0359	1.1529	38.96	3	1	Plateau	1.1072	0.93215	NaN	1	0	Median	0.43696	0.54162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0359	1.1529	NaN	1	0	Median	204760000	100030000	104730000	61523000	27649000	33875000	69817000	41232000	28584000	0	0	0	73416000	31149000	42267000	39051	4831	36737	239394;239395;239396	321228;321229;321230	321229			3	
NLPSLFKK	2	Unmodified	945.56475	0.56475231	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	48.094	47.854	3	0.037188	41044	160511_QHF_FH_JSI12i_3	30.254	17.678			0.59825	0.63543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59825	0.63543	NaN	1	1	Median	20922000	13882000	7039500	0	0	0	0	0	0	0	0	0	20922000	13882000	7039500	39052	4831	36738	239397	321231	321231			1	
NLPVPVYLRPLDEK	1	Unmodified	1651.9297	0.92974218	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.975	80.192	3	0.0046045	71216	160511_QHF_FH_JSI10i_2	47.774	43.059			0.85337	0.90237	13.303	4	0	Median	1.1342	1.0117	NaN	1	0	Median	0.62522	0.79053	NaN	1	0	Median	0.81927	0.81142	NaN	1	0	Median	0.8889	1.0035	NaN	1	0	Median	192200000	89178000	103020000	36503000	16082000	20421000	40937000	22448000	18489000	65802000	28400000	37402000	48960000	22247000	26712000	39053	404	36739	239398;239399;239400;239401	321232;321233;321234;321235	321235			4	
NLPWLFTFNVK	1	Unmodified	1377.7445	0.74450759	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.725	87.331	2	3.181E-07	47153	160513_QHF_FH_JSI12Kac_6	108.67	55.877			0.22518	0.23977	91.248	4	3	Median	1.0292	0.86443	NaN	1	0	Median	0.30895	0.37138	NaN	1	1	Median	0.16412	0.1548	NaN	1	1	Median	0.10683	0.11463	NaN	1	1	Median	627690000	457470000	170220000	184830000	91104000	93727000	143910000	104350000	39561000	159490000	135430000	24064000	139460000	126590000	12868000	39054	339	36740	239402;239403;239404;239405	321236;321237;321238;321239;321240	321239			5	
NLPWVEK	1	Unmodified	884.4756	0.47560295	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.739	52.216	2	0.05376	45175	160511_QHF_FH_JSI11i_2	46.994	5.767			2.2104	2.2312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2104	2.2312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70962000	28083000	42879000	0	0	0	0	0	0	70962000	28083000	42879000	0	0	0	39055	1505	36741	239406	321241	321241			1	
NLPYKITAEEMYDIFGK	2	Acetyl (K)	2073.0129	0.012879457	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	96.508	87.066	2	0.0020624	47503	160513_QHF_FH_JSI12Kac_6	94.09	79.528			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32285000	0	32285000	0	0	0	0	0	0	0	0	0	32285000	0	32285000	39056	5574	36742	239407	321242	321242	3489		1	
NLPYKVTQDELK	2	Acetyl (K)	1488.7824	0.78240924	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			70.657	60.017	2	0.015262	32161	160513_QHF_FH_JSI10Kac_4	51.927	27.072			1.0826	1.3209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0826	1.3209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8223900	3428700	4795200	0	0	0	8223900	3428700	4795200	0	0	0	0	0	0	39057	1154	36743	239408	321243	321243	1018		1	
NLPYVYIPSK	1	Unmodified	1192.6492	0.64921022	5089	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.77	3	2						4		1	2	4	2	73.652	67.972	2	0.0045744	59596	160511_QHF_FH_JSI12i_2	65.347	45.018			0.88116	0.84304	31.692	8	4	Median	0.81323	0.67845	NaN	1	0	Median	0.52641	0.62186	NaN	1	0	Median	1.0115	0.99209	24.463	4	3	Median	0.93389	1.0448	46.01	2	1	Median	258540000	130930000	127610000	36328000	20112000	16216000	1746200	1081600	664500	172000000	81234000	90765000	48469000	28500000	19969000	39058	5089	36744	239409;239410;239411;239412;239413;239414;239415;239416;239417	321244;321245;321246;321247;321248;321249;321250;321251;321252;321253;321254	321246			11	
NLQAPSKLTNSSSTGTVGK	2	Acetyl (K)	1930.996	0.99598384	3192	Q6ZU65	UBN2	Ubinuclein-2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						3					1		2	57.791	48.534	2;3	0.0061855	25128	160513_QHF_FH_JSI10Kac_3	72.496	58.238			0.81254	0.8466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81254	0.8466	NaN	1	0	Median	6187100	5592600	594470	0	0	0	1128900	1128900	0	0	0	0	5058200	4463800	594470	39059	3192	36745	239418;239419;239420	321255;321256;321257	321257	2792		3	
NLQDAMQVCR	0	Unmodified	1233.5594	0.55942571	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	6	6					4			2	5	5	4	40.202	37.551	2	1.6875E-06	32231	160511_QHF_FH_JSI11i_2	132.9	102.33			0.30574	0.3014	156.98	15	15	Median	1.0661	0.88724	196.73	2	2	Median	1.1132	1.2967	141.69	5	5	Median	0.30574	0.3014	165.7	5	5	Median	4.7651	1.6758	228.05	3	3	Plateau	1453200000	849940000	603260000	103520000	42124000	61395000	521380000	309040000	212340000	502830000	323020000	179820000	325470000	175760000	149720000	39060	1655	36746	239421;239422;239423;239424;239425;239426;239427;239428;239429;239430;239431;239432;239433;239434;239435;239436	321258;321259;321260;321261;321262;321263;321264;321265;321266;321267;321268;321269;321270;321271;321272;321273	321269			16	
NLQDAMQVCR	0	Oxidation (M)	1249.5543	0.55434033	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		20.149	20.026	2	0.012579	17189	160511_QHF_FH_JSI11i_1	56.563	38.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39061	1655	36746	239437	321274	321274		1338	1	
NLQDLVR	0	Unmodified	856.47667	0.47666558	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		42.202	41.44	2	0.040857	36287	160511_QHF_FH_JSI9i_2	49.358	7.8563			15.433	14.634	17.326	2	2	Median	14.845	12.947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16.045	16.542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136520000	8453400	128060000	45634000	2715500	42918000	0	0	0	90884000	5737900	85146000	0	0	0	39062	179	36747	239438;239439	321275;321276	321275			2	
NLQDPFYPR	0	Unmodified	1148.5615	0.56145784	4045	Q96EI5;Q9H3H9	TCEAL4;TCEAL2	Transcription elongation factor A protein-like 4;Transcription elongation factor A protein-like 2	yes	no	0	0	0	0				By MS/MS	2	0		1											1	55.089	53.711	2	0.00077814	45969	160511_QHF_FH_JSI12i_2	74.301	39.006			0.83223	0.89159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83223	0.89159	NaN	1	0	Median	82155000	39974000	42181000	0	0	0	0	0	0	0	0	0	82155000	39974000	42181000	39063	4045	36748	239440	321277	321277			1	
NLQEAEEWYK	1	Unmodified	1308.5986	0.59863121	913	P08670;P41219	VIM;PRPH	Vimentin;Peripherin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.759	53.798	2	1.7926E-06	47480	160511_QHF_FH_JSI10i_2	134.05	123.76			0.11754	0.10897	25.137	4	4	Median	0.13072	0.11125	NaN	1	1	Median	0.14461	0.17615	NaN	1	1	Median	0.1057	0.10674	NaN	1	1	Median	0.091431	0.10306	NaN	1	1	Median	441170000	398640000	42524000	82814000	72691000	10124000	123090000	110920000	12173000	142290000	130350000	11944000	92971000	84688000	8283400	39064	913	36749	239441;239442;239443;239444	321278;321279;321280;321281	321281			4	
NLQEEIDALESR	0	Unmodified	1415.6892	0.68923713	4923	Q9NQP4	PFDN4	Prefoldin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	71.654	70.717	2;3	8.1011E-08	61954	160511_QHF_FH_JSI11i_2	137.89	107.64			1.2853	1.2428	85.927	6	5	Median	1.8204	1.5604	NaN	1	1	Median	0.73425	0.90154	118.17	2	2	Median	0.97817	0.98981	NaN	1	0	Median	1.2595	1.3928	141	2	2	Median	1040600000	506620000	533970000	108770000	45574000	63195000	325730000	203580000	122150000	253530000	134230000	119300000	352560000	123240000	229320000	39065	4923	36750	239445;239446;239447;239448;239449;239450;239451	321282;321283;321284;321285;321286;321287;321288;321289	321286			8	
NLQEGNEVDSQSSIR	0	Unmodified	1674.7809	0.78090569	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	28.867	28.167	2	2.5381E-07	24616	160511_QHF_FH_JSI9i_1	172.92	161.71			1.6118	1.6738	106.71	5	5	Median	1.1779	0.95389	168.48	2	2	Median	NaN	NaN	NaN	0	0	Median	1.726	1.6738	NaN	1	1	Median	0.73055	0.76571	114.3	2	2	Median	192170000	106730000	85446000	48580000	25294000	23287000	34604000	34604000	0	33836000	7298200	26538000	75150000	39529000	35621000	39066	484	36751	239452;239453;239454;239455;239456;239457	321290;321291;321292;321293;321294;321295	321295			6	
NLQEGNLER	0	Unmodified	1071.5309	0.530886	2418	Q13445	TMED1	Transmembrane emp24 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	19.761	18.769	2	0.018073	15786	160511_QHF_FH_JSI9i_2	51.949	20.015			0.74159	0.74126	80.011	2	2	Median	1.4878	1.3052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36965	0.42098	NaN	1	1	Median	28077000	13104000	14973000	18137000	4595300	13542000	0	0	0	0	0	0	9939900	8509000	1430900	39067	2418	36752	239458;239459	321296;321297	321297			2	
NLQEGQVTDPR	0	Unmodified	1255.6157	0.61567826	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	22.244	21.918	2	0.0013177	19266	160511_QHF_FH_JSI12i_1	76.682	58.37			1.6727	1.6893	13.191	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9048	1.8545	NaN	1	1	Median	1.4689	1.5389	NaN	1	1	Median	129490000	52937000	76554000	0	0	0	0	0	0	52565000	19477000	33089000	76926000	33461000	43465000	39068	3854	36753	239460;239461	321298;321299	321299			2	
NLQEILHGAVR	0	Unmodified	1248.6939	0.693869	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	58.27	57.831	3	0.00080493	50092	160511_QHF_FH_JSI12i_3	67.456	52.895			8.2635	7.8832	294.3	5	5	Median	8.9424	7.8832	NaN	1	1	Median	25.235	31.402	NaN	1	1	Median	0.68297	0.67697	360.22	2	2	Median	0.083493	0.082564	NaN	1	1	Median	162860000	56944000	105910000	16666000	1404800	15262000	27753000	592910	27160000	88155000	27570000	60585000	30282000	27377000	2904700	39069	774	36754	239462;239463;239464;239465;239466;239467	321300;321301;321302;321303;321304;321305	321305			6	
NLQEIQQAGER	0	Unmodified	1284.6422	0.64222736	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	4.43	7	5					2			3	4	5	2	31.418	30.726	2	4.3265E-06	27134	160511_QHF_FH_JSI11i_1	122.96	62.134			0.22165	0.25915	208.08	11	11	Median	0.18133	0.15332	257.78	3	3	Median	0.21009	0.25915	189.74	3	3	Median	1.1151	1.0627	242.99	4	4	Median	0.22165	0.22646	NaN	1	1	Median	722870000	456350000	266520000	126220000	77888000	48334000	194350000	121510000	72842000	299970000	163350000	136630000	102320000	93602000	8721300	39070	3503	36755	239468;239469;239470;239471;239472;239473;239474;239475;239476;239477;239478;239479;239480;239481	321306;321307;321308;321309;321310;321311;321312;321313;321314;321315;321316;321317;321318;321319;321320	321306			15	
NLQEQTVQLQSELSR	0	Unmodified	1771.9064	0.90644055	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	61.214	60.071	2	1.3568E-16	52463	160511_QHF_FH_JSI11i_2	122.45	84.426			1.3388	1.2868	57.566	2	2	Median	1.0145	0.85652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7669	1.9333	NaN	1	1	Median	42494000	13825000	28669000	23253000	8886000	14367000	0	0	0	0	0	0	19241000	4938600	14302000	39071	1016	36756	239482;239483;239484	321321;321322;321323	321323			3	
NLQEVLGEEK	1	Unmodified	1157.5928	0.59281755	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.371	47.956	2	0.00059545	43410	160511_QHF_FH_JSI11i_1	81.525	43.232			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39072	1823	36757	239485	321324	321324			1	
NLQGFLEQPK	1	Unmodified	1172.619	0.61897272	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.001	56.494	2	0.0030977	48835	160511_QHF_FH_JSI11i_2	70.908	49.313			0.11009	0.1141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11009	0.1141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	412020000	369210000	42806000	0	0	0	0	0	0	412020000	369210000	42806000	0	0	0	39073	2947	36758	239486	321325	321325			1	
NLQLFMENK	1	Unmodified	1135.5696	0.56957969	998	P11387;Q969P6	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	63.87	62.951	2	0.00018239	55045	160511_QHF_FH_JSI11i_2	103.87	91.825			0.55626	0.57583	248.55	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67298	0.67634	313.14	2	2	Median	0.50592	0.55811	294.81	2	2	Median	128400000	85143000	43253000	0	0	0	0	0	0	73975000	49761000	24215000	54420000	35382000	19038000	39074	998	36759	239487;239488;239489;239490	321326;321327;321328;321329	321329			4	
NLQLIQSIR	0	Unmodified	1083.64	0.64004252	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.64							1	3	8	3	4	3	2	71.669	62.483	2	1.2315E-05	34217	160513_QHF_FH_JSI10Kac_6	110.41	57.622			1.5616	1.5431	273.51	6	6	Median	1.9015	1.6211	307.38	2	2	Median	NaN	NaN	NaN	0	0	Median	6.4343	6.3908	295.04	3	3	Median	0.15902	0.17241	NaN	1	1	Median	170550000	83559000	86988000	23709000	6852100	16857000	65167000	35643000	29524000	45416000	18891000	26525000	36256000	22173000	14083000	39075	3325	36760	239491;239492;239493;239494;239495;239496;239497;239498;239499;239500;239501;239502	321330;321331;321332;321333;321334;321335;321336;321337;321338;321339;321340;321341	321340			12	
NLQMWEEMK	1	Unmodified	1207.5366	0.536565	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	63.691	62.728	2	9.0323E-05	54986	160511_QHF_FH_JSI9i_2	112.84	100.62			0.24387	0.24724	179.61	5	5	Median	3.5147	2.9859	NaN	1	1	Median	1.1381	1.4062	261.59	2	2	Median	0.24387	0.24724	NaN	1	1	Median	0.15452	0.1742	NaN	1	1	Median	358480000	211080000	147410000	39341000	7142600	32198000	96978000	67951000	29027000	110480000	88078000	22407000	111680000	47904000	63777000	39076	878	36761	239503;239504;239505;239506;239507;239508	321342;321343;321344;321345;321346;321347	321344			6	
NLQMWEEMKK	2	Unmodified	1335.6315	0.63152802	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		10	4							3	2	4	5	52.96	52.248	2;3	0.0001451	46148	160511_QHF_FH_JSI11i_3	102.07	73.859			0.56482	0.57856	226.21	12	12	Median	0.56002	0.4757	241.69	3	3	Median	0.56966	0.70366	NaN	1	1	Median	1.0071	0.94747	287.09	4	4	Median	0.61072	0.64684	248.98	4	4	Median	1274800000	766030000	508740000	327180000	182690000	144490000	238600000	112760000	125840000	301520000	220840000	80684000	407460000	249740000	157720000	39077	878	36762	239509;239510;239511;239512;239513;239514;239515;239516;239517;239518;239519;239520;239521;239522	321348;321349;321350;321351;321352;321353;321354;321355;321356;321357;321358;321359;321360;321361;321362	321349			15	
NLQNLLILTAIK	1	Unmodified	1352.8391	0.83913625	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.32	6.95	1	7	1					1	9	3	5	5	6	97.754	93.997	2;3	6.5259E-20	47018	160513_QHF_FH_JSI9Kac_6	185.08	119.86			0.10711	0.12026	90.146	9	9	Median	0.079266	0.066499	129.92	2	2	Median	0.1839	0.21931	84.977	2	2	Median	0.060013	0.058985	48.92	3	3	Plateau	0.24043	0.26865	12.359	2	2	Median	6506800000	5707800000	799040000	1473200000	1316100000	157110000	1212300000	1016700000	195620000	2719000000	2450000000	268990000	1102300000	925000000	177330000	39078	1807;2155	36763	239523;239524;239525;239526;239527;239528;239529;239530;239531;239532;239533;239534;239535;239536;239537;239538;239539;239540;239541	321363;321364;321365;321366;321367;321368;321369;321370;321371;321372;321373;321374;321375;321376;321377;321378;321379;321380;321381	321376			19	
NLQNVDMK	1	Unmodified	960.46987	0.46986564	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.5	4.72	3	2					1			2	1	3		26.187	22.697	2	0.00031448	19836	160511_QHF_FH_JSI10i_1	106.91	55.945			0.88205	0.75299	114.48	3	3	Plateau	0.8836	0.75299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27543	0.27572	139.57	2	2	Median	NaN	NaN	NaN	0	0	Median	298940000	165280000	133660000	147630000	75088000	72538000	0	0	0	151320000	90196000	61120000	0	0	0	39079	1089	36764	239542;239543;239544;239545;239546;239547	321382;321383;321384;321385;321386;321387	321383			6	
NLQNVDMK	1	Oxidation (M)	976.46478	0.46478027	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	1	0				By MS/MS	1	0	2												2	23.387	22.872	2	0.0097133	20237	160511_QHF_FH_JSI12i_1	62.546	34.44			1.1632	1.2079	221.93	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1632	1.2079	221.93	2	1	Median	167950000	87062000	80888000	0	0	0	0	0	0	0	0	0	167950000	87062000	80888000	39080	1089	36764	239548;239549	321388;321389	321388		736	2	
NLQPQGDEDPGK	1	Unmodified	1296.5946	0.59460847	3016	Q66K14	TBC1D9B	TBC1 domain family member 9B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			17.606	16.507	2	0.00080356	13701	160511_QHF_FH_JSI9i_1	78.098	35.811			2.3144	1.9678	NaN	1	1	Median	2.3144	1.9678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27810000	11626000	16184000	27810000	11626000	16184000	0	0	0	0	0	0	0	0	0	39081	3016	36765	239550;239551	321390;321391	321391			2	
NLQQQYLQINQEITELHPLK	1	Unmodified	2449.2965	0.29652296	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	92.597	91.776	3	0.00026336	79191	160511_QHF_FH_JSI12i_2	57.496	45.062			0.91424	0.97109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91424	0.97109	NaN	1	1	Median	26393000	17023000	9370000	0	0	0	0	0	0	0	0	0	26393000	17023000	9370000	39082	2574	36766	239552;239553	321392;321393	321392			2	
NLQSDVLMTVVK	1	Unmodified	1345.7275	0.72753689	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	3	1	78.354	77.534	2	0.00028042	68968	160511_QHF_FH_JSI10i_2	91.549	52.245			0.69436	0.71437	16.798	4	2	Median	1.0226	0.85615	NaN	1	0	Median	0.48476	0.59363	NaN	1	1	Median	0.65834	0.65041	NaN	1	1	Median	0.73235	0.78462	NaN	1	0	Median	150380000	94729000	55647000	26590000	16645000	9945100	33102000	21373000	11729000	50268000	31830000	18438000	40415000	24879000	15536000	39083	4681	36767	239554;239555;239556;239557;239558;239559;239560	321394;321395;321396;321397;321398;321399	321399			6	
NLQSEVEGVK	1	Unmodified	1101.5666	0.5666028	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	1	3	2	36.466	33.247	2	2.306E-05	30053	160511_QHF_FH_JSI12i_1	107.69	56.728			1.399	1.1756	76.914	7	5	Median	1.399	1.1756	NaN	1	1	Median	2.0843	2.5512	NaN	1	1	Median	1.1024	1.0822	106.35	3	2	Median	1.5041	1.5846	88.08	2	1	Median	985850000	488480000	497360000	67542000	37714000	29828000	278930000	160720000	118210000	467520000	221050000	246470000	171860000	68998000	102860000	39084	4459	36768	239561;239562;239563;239564;239565;239566;239567	321400;321401;321402;321403;321404;321405;321406	321402			7	
NLQSVVLSK	1	Unmodified	986.57605	0.57604528	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.2	6.37		3						2		2		2	1	48.025	43.177	2	0.0018413	37848	160511_QHF_FH_JSI9i_2	76.221	25.518			0.039067	0.041428	255.24	4	4	Linear	5.6037	4.7388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33724	0.33612	342.04	2	2	Median	0.0936	0.10365	NaN	1	1	Median	259550000	245940000	13611000	60628000	57459000	3168700	0	0	0	120010000	112840000	7174600	78912000	75645000	3267600	39085	1557	36769	239568;239569;239570;239571;239572	321407;321408;321409;321410;321411	321409			5	
NLQTEQASLQSENTHFENENQK	1	Unmodified	2588.1739	0.17390122	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	40.872	39.829	3	8.7927E-07	35136	160511_QHF_FH_JSI10i_2	71.535	67.658			0.60094	0.73713	49.101	5	4	Median	0.59211	0.52516	NaN	1	1	Median	0.60094	0.73713	NaN	1	0	Median	1.7438	1.7559	NaN	1	1	Median	0.7624	0.84308	43.257	2	2	Median	101400000	53455000	47947000	15848000	11047000	4800900	18877000	9307000	9570000	24516000	10722000	13794000	42161000	22379000	19782000	39086	4195	36770	239573;239574;239575;239576;239577	321412;321413;321414;321415;321416;321417;321418	321418			7	
NLQTVNVDEN	0	Unmodified	1144.536	0.53603095	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.23	5			2	2					1	3	2	3	38.917	34.652	2	2.5914E-09	30776	160511_QHF_FH_JSI9i_1	128.12	128.12			0.64654	0.6877	62.044	9	5	Median	1.5734	1.2422	NaN	1	0	Median	0.49151	0.57207	104.64	3	3	Median	0.71128	0.68819	64.91	2	1	Median	0.64654	0.6877	13.623	3	1	Median	5120200000	2619700000	2500400000	1121700000	504570000	617080000	1983000000	960270000	1022700000	1051100000	635030000	416080000	964390000	519850000	444540000	39087	2035	36771	239578;239579;239580;239581;239582;239583;239584;239585;239586	321419;321420;321421;321422;321423;321424;321425;321426;321427;321428;321429	321425			11	
NLQVVETSAR	0	Unmodified	1115.5935	0.59348625	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	32.086	30.904	2	0.00074291	26092	160511_QHF_FH_JSI12i_2	84.213	56.039			0.76745	0.66648	NaN	1	1	Median	0.76745	0.66648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21451000	15535000	5915300	12168000	6253000	5915300	0	0	0	0	0	0	9282300	9282300	0	39088	4974	36772	239587;239588	321430;321431	321430			2	
NLQYYDISAK	1	Unmodified	1213.5979	0.59790293	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.48	6.1	7	8	4		5	6	6	7	7	9	12	15	14	53.528	47.106	2	6.5909E-09	26856	160513_QHF_FH_JSI11Kac_4	123.35	78.274			0.71674	0.66098	147.97	46	43	Median	0.55708	0.48287	144.95	9	9	Median	1.961	2.2671	141.6	11	10	Median	0.6297	0.61132	138.76	12	11	Median	0.88575	0.94581	176.16	14	13	Median	44131000000	24602000000	19529000000	10191000000	4454000000	5737300000	6826900000	4762600000	2064300000	14597000000	7541600000	7055700000	12515000000	7844000000	4671500000	39089	2021	36773	239589;239590;239591;239592;239593;239594;239595;239596;239597;239598;239599;239600;239601;239602;239603;239604;239605;239606;239607;239608;239609;239610;239611;239612;239613;239614;239615;239616;239617;239618;239619;239620;239621;239622;239623;239624;239625;239626;239627;239628;239629;239630;239631;239632;239633;239634;239635;239636;239637;239638	321432;321433;321434;321435;321436;321437;321438;321439;321440;321441;321442;321443;321444;321445;321446;321447;321448;321449;321450;321451;321452;321453;321454;321455;321456;321457;321458;321459;321460;321461;321462;321463;321464;321465;321466;321467;321468;321469;321470;321471;321472;321473;321474;321475;321476;321477;321478;321479;321480;321481;321482;321483;321484;321485;321486;321487;321488;321489;321490;321491;321492;321493;321494;321495;321496;321497;321498;321499;321500	321458			69	
NLRDIDEVSSLLR	0	Unmodified	1528.8209	0.82092001	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	3	2	79.013	78.569	2;3	1.6215E-06	70267	160511_QHF_FH_JSI10i_2	107.61	99.043			0.86982	0.91266	260.66	9	9	Median	52.711	45.052	NaN	1	1	Median	0.69776	0.86288	268.86	3	3	Median	0.08592	0.080228	298.33	3	3	Plateau	0.23191	0.24021	188.77	2	2	Median	728030000	357620000	370410000	88060000	429350	87631000	297750000	157080000	140670000	225500000	118980000	106530000	116720000	81142000	35579000	39090	1721	36774	239639;239640;239641;239642;239643;239644;239645;239646;239647	321501;321502;321503;321504;321505;321506;321507;321508;321509;321510	321508			10	
NLREDGEK	1	Unmodified	959.46722	0.46722311	915;818;2049	P04899;P08754;P63096	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	1		By matching	By matching	By MS/MS	2.33	0.471		2	1								1	1	1	5.264	5.0954	3	0.033802	2881	160511_QHF_FH_JSI12i_3	26.889	16.837			1.0855	1.0876	102.14	3	0	Median	NaN	NaN	NaN	0	0	Median	0.46119	0.56304	NaN	1	0	Median	4.2303	4.1769	NaN	1	0	Median	1.0855	1.0876	NaN	1	0	Median	1733800000	916630000	817150000	0	0	0	695020000	380540000	314480000	56063000	9112400	46950000	982700000	526980000	455720000	39091	818;915;2049	36775	239648;239649;239650	321511	321511			1	
NLRPGDSQTAAQAR	0	Unmodified	1483.7492	0.74915205	3825	Q8WZA9	IRGQ	Immunity-related GTPase family Q protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			11.923	11.231	3	0.043255	8792	160511_QHF_FH_JSI10i_3	26.729	18.216			0.3664	0.41985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3664	0.41985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11391000	9230800	2160600	0	0	0	11391000	9230800	2160600	0	0	0	0	0	0	39092	3825	36776	239651	321512;321513	321513			2	
NLSADQWR	0	Unmodified	988.47264	0.47264284	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.901	30.585	2	0.005541	25860	160511_QHF_FH_JSI12i_2	62.546	50.499			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39093	5507	36777	239652	321514	321514			1	
NLSDIDLMAPQPGV	0	Unmodified	1468.7232	0.7231798	3980	Q96B49	TOMM6	Mitochondrial import receptor subunit TOM6 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	90.655	90.118	2	0.00044748	80161	160511_QHF_FH_JSI9i_1	96.171	89.146			2.2356	1.8271	51.013	3	3	Median	2.2356	1.8271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.9212	3.7932	NaN	1	1	Median	1.3939	1.4207	NaN	1	1	Median	249030000	82538000	166500000	54814000	26017000	28798000	0	0	0	109090000	22431000	86657000	85131000	34090000	51041000	39094	3980	36778	239653;239654;239655	321515;321516;321517;321518;321519	321519			5	
NLSDVATK	1	Unmodified	846.4447	0.44469675	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.815	17.329	2	0.011949	14789	160511_QHF_FH_JSI10i_1	62.546	28.458			4.2036	4.5711	32.471	4	4	Median	4.0924	3.4016	NaN	1	1	Median	3.9191	4.6564	NaN	1	1	Median	7.596	7.4416	NaN	1	1	Median	4.3178	4.4873	NaN	1	1	Median	733680000	166250000	567420000	202960000	60584000	142370000	174710000	44250000	130460000	188050000	23161000	164890000	167960000	38260000	129700000	39095	1065	36779	239656;239657;239658;239659	321520;321521;321522;321523	321522			4	
NLSEEGLLR	0	Unmodified	1029.5455	0.54547343	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.583	43.197	2	0.061914	36934	160511_QHF_FH_JSI12i_2	41.876	17.057			5.8922	6.3692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.8922	6.3692	NaN	1	1	Median	31406000	7188600	24218000	0	0	0	0	0	0	0	0	0	31406000	7188600	24218000	39096	2305	36780	239660	321524	321524			1	
NLSEVPQCVWR	0	Unmodified	1386.6714	0.671419	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.504	59.998	2	0.0042787	52123	160511_QHF_FH_JSI11i_2	65.347	55.115			0.49996	0.49133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49996	0.49133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41481000	28198000	13283000	0	0	0	0	0	0	41481000	28198000	13283000	0	0	0	39097	4803	36781	239661	321525	321525			1	
NLSFEEGNVK	1	Unmodified	1135.551	0.55095274	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.087	37.643	2	0.010134	32163	160511_QHF_FH_JSI11i_2	57.859	42.197			2.5276	2.4521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5276	2.4521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17559000	5527700	12031000	0	0	0	0	0	0	17559000	5527700	12031000	0	0	0	39098	3021	36782	239662	321526	321526			1	
NLSFNELYPSGTLK	1	Unmodified	1581.8039	0.80387296	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	78.787	77.776	2	0.0017207	67210	160511_QHF_FH_JSI12i_2	75.088	45.554			1.7633	1.7435	41.344	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7633	1.7435	NaN	1	1	Median	1.2374	1.3601	54.84	2	2	Median	102620000	45705000	56919000	0	0	0	0	0	0	41180000	17986000	23195000	61444000	27720000	33725000	39099	3819	36783	239663;239664;239665	321527;321528;321529;321530	321528			4	
NLSGQPNFPCR	0	Unmodified	1288.5983	0.59825406	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	37.131	36.238	2	2.4794E-05	31021	160511_QHF_FH_JSI11i_2	100.57	95.628			1.1379	1.191	5.9239	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1298	1.1422	NaN	1	0	Median	1.146	1.242	NaN	1	1	Median	95853000	46008000	49845000	0	0	0	0	0	0	63137000	31825000	31312000	32716000	14183000	18533000	39100	4874	36784	239666;239667	321531;321532	321532			2	
NLSIIIFQAK	1	Unmodified	1145.6808	0.6808447	5842				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.73		4							7	4	1	4	2	103.44	97.79	2	0.0051276	53636	160513_QHF_FH_JSI11Kac_6	62.2	26.256	+		1.0616	1.027	40.36	9	1	Median	1.2254	1.0494	51.341	4	0	Linear	0.67501	0.79428	NaN	1	1	Median	1.0616	1.027	0	2	0	Median	1.0859	1.1821	0	2	0	Median	186780000	111930000	74850000	117960000	78749000	39215000	36128000	18755000	17372000	23684000	11144000	12541000	9002500	3281000	5721500	39101	5842	36785	239668;239669;239670;239671;239672;239673;239674;239675;239676;239677;239678	321533;321534;321535;321536;321537;321538;321539	321533			7	
NLSLQNEIAK	1	Unmodified	1128.6139	0.61388734	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.916	44.422	2	0.0025614	38217	160511_QHF_FH_JSI11i_2	72.928	57.266			2.2014	2.2469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2014	2.2469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27928000	9204200	18724000	0	0	0	0	0	0	27928000	9204200	18724000	0	0	0	39102	4330	36786	239679	321540	321540			1	
NLSLSQQLK	1	Unmodified	1029.5819	0.58185893	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.734	40.411	2	0.040479	36455	160511_QHF_FH_JSI11i_1	46.129	21.206			2.6593	2.5514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6593	2.5514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25683000	6575800	19108000	0	0	0	0	0	0	25683000	6575800	19108000	0	0	0	39103	4080	36787	239680	321541	321541			1	
NLSNPEMTSGSDK	1	Unmodified	1378.6035	0.60345859	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	22.27	21.88	2	3.0011E-05	19222	160511_QHF_FH_JSI12i_1	117.98	90.861			0.8029	0.89833	5.7709	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7305	0.86241	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88247	0.93575	NaN	1	1	Median	202430000	104330000	98094000	0	0	0	93824000	52200000	41624000	0	0	0	108600000	52131000	56470000	39104	264	36788	239681;239682	321542;321543;321544	321542			3	
NLSPGAVESDVR	0	Unmodified	1242.6204	0.62042929	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.04	4	5	2				3			5	2	3	4	42.56	38.91	2	3.0376E-05	35578	160511_QHF_FH_JSI12i_1	107.06	71.76			0.84005	0.84274	21.333	10	5	Median	1.0208	0.84701	37.901	2	1	Median	0.95073	1.1192	16.026	2	1	Median	0.84335	0.81167	21.316	3	1	Plateau	0.74975	0.80586	5.0205	3	2	Median	1950700000	1048200000	902510000	353430000	171220000	182200000	492500000	268530000	223980000	623450000	353910000	269540000	481340000	254550000	226790000	39105	1805	36789	239683;239684;239685;239686;239687;239688;239689;239690;239691;239692;239693;239694;239695;239696	321545;321546;321547;321548;321549;321550;321551;321552;321553;321554;321555;321556;321557;321558;321559;321560;321561;321562;321563;321564;321565;321566	321551			22	
NLSPYVSNELLEEAFSQFGPIER	0	Unmodified	2638.2915	0.29149716	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		102.34	102.23	2;3	4.3849E-49	90013	160511_QHF_FH_JSI11i_2	282.5	229.97			1.2785	1.3066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2785	1.3066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	138850000	52529000	86323000	0	0	0	0	0	0	138850000	52529000	86323000	0	0	0	39106	1222	36790	239697;239698	321567;321568	321567			2	
NLSSASQATR	0	Unmodified	1033.5152	0.51523593	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	9.4852	9.0591	2	0.0040469	6688	160511_QHF_FH_JSI11i_2	67.334	36.722			3.2833	3.5586	58.39	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.074	5.3777	NaN	1	1	Median	2.1246	2.3549	NaN	1	1	Median	67408000	13355000	54053000	0	0	0	0	0	0	39160000	6770900	32389000	28248000	6584100	21664000	39107	5608	36791	239699;239700	321569;321570	321570			2	
NLSSDEATNPISR	0	Unmodified	1402.6688	0.66883604	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	32.85	32.116	2	8.0433E-06	28787	160511_QHF_FH_JSI11i_1	130.44	113.76			1.0638	1.0913	40.773	5	3	Median	0.99027	0.8171	7.3619	2	1	Median	1.2045	1.4102	NaN	1	1	Median	2.1425	2.1356	NaN	1	1	Median	1.0638	1.0913	NaN	1	0	Median	830800000	408370000	422430000	473570000	251350000	222230000	114420000	58278000	56138000	130970000	52980000	77988000	111840000	45766000	66075000	39108	3264	36792	239701;239702;239703;239704;239705	321571;321572;321573;321574;321575;321576	321571			6	
NLSSNEAISLEEIR	0	Unmodified	1573.7948	0.79476484	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	63.589	62.753	2	6.4381E-40	57294	160511_QHF_FH_JSI12i_1	200.93	161.08			0.97712	0.94765	21.806	7	1	Median	0.93905	0.76445	30.382	2	1	Median	0.75147	0.9184	NaN	1	0	Median	0.95287	0.96097	12.172	2	0	Median	1.0558	1.1186	17.599	2	0	Median	1609700000	896020000	713670000	123110000	72979000	50135000	283010000	141970000	141040000	654700000	403510000	251200000	548860000	277560000	271300000	39109	2094	36793	239706;239707;239708;239709;239710;239711;239712	321577;321578;321579;321580;321581;321582;321583;321584;321585;321586;321587	321581			11	
NLSTFAVDGK	1	Unmodified	1050.5346	0.53457439	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.35	5.37	8	5					4			4	5	3	5	46.059	43.253	2	0.00034716	39220	160511_QHF_FH_JSI12i_1	90.108	64.371			0.2946	0.33125	121.27	15	14	Median	0.42125	0.35598	80.565	4	4	Median	0.22554	0.26087	194.97	4	3	Median	0.18026	0.17712	172.41	3	3	Plateau	0.32213	0.35108	35.626	4	4	Median	3010300000	2535400000	474820000	669260000	519230000	150030000	471890000	390020000	81875000	555580000	482430000	73149000	1313500000	1143800000	169760000	39110	3	36794	239713;239714;239715;239716;239717;239718;239719;239720;239721;239722;239723;239724;239725;239726;239727;239728;239729	321588;321589;321590;321591;321592;321593;321594;321595;321596;321597;321598;321599;321600;321601;321602;321603;321604	321592			17	
NLSTVMDEIHTVLK	1	Unmodified	1598.8338	0.83379288	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	98.046	97.873	3	4.1175E-05	86189	160511_QHF_FH_JSI11i_2	93.823	82.349			4.8101	5.0901	131.36	6	4	Median	2.0862	1.7972	143.38	2	1	Median	4.0957	5.2305	NaN	1	1	Median	1.8528	1.8859	190.46	2	1	Median	9.9765	10.97	NaN	1	1	Median	127030000	38072000	88955000	39768000	14495000	25273000	12238000	1406300	10832000	55276000	20044000	35231000	19744000	2125800	17618000	39111	3438	36795	239730;239731;239732;239733;239734;239735	321605;321606;321607;321608;321609	321607			5	
NLSTVMDEIHTVLKK	2	Unmodified	1726.9288	0.9287559	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	91.408	91.046	3	6.3661E-05	81010	160511_QHF_FH_JSI11i_3	99.566	79.47			0.12699	0.13371	76.593	2	2	Median	NaN	NaN	NaN	0	0	Median	0.19611	0.22981	NaN	1	1	Median	0.082231	0.077795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77439000	74773000	2665700	0	0	0	9591700	8863100	728650	36003000	34066000	1937100	31845000	31845000	0	39112	3438	36796	239736;239737;239738	321610;321611;321612	321610			3	
NLSVEDAAR	0	Unmodified	973.48287	0.48287317	800	P04040	CAT	Catalase	yes	yes	0	0	0	0	By MS/MS	By matching			1.5	0.5	1	1								1	1			24.04	22.983	2	0.034198	19781	160511_QHF_FH_JSI9i_1	68.224	35.383			0.80998	0.80065	128.44	2	0	Median	0.39526	0.32286	NaN	1	0	Median	1.6598	1.9855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107560000	63373000	44191000	81152000	52951000	28201000	26412000	10422000	15990000	0	0	0	0	0	0	39113	800	36797	239739;239740	321613	321613			0	
NLTALGLNLVASGGTAK	1	Unmodified	1598.8992	0.89917033	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		15	3							4	6	4	4	86.829	86.073	2;3	2.2945E-28	74262	160511_QHF_FH_JSI12i_2	223.39	200.07			1.7122	1.6194	284.44	14	14	Median	106.57	92.357	357.4	3	3	Plateau	0.16112	0.19077	333.58	3	3	Median	2.0879	2.1353	272.25	4	4	Median	0.71576	0.7769	314.79	4	4	Median	715120000	349610000	365510000	104310000	9327000	94980000	203480000	123350000	80132000	226260000	115520000	110740000	181080000	101420000	79658000	39114	1381	36798	239741;239742;239743;239744;239745;239746;239747;239748;239749;239750;239751;239752;239753;239754;239755;239756;239757;239758	321614;321615;321616;321617;321618;321619;321620;321621;321622;321623;321624;321625;321626;321627;321628;321629;321630;321631;321632;321633;321634	321615			21	
NLTEDNSQNQDLIAK	1	Unmodified	1701.817	0.81695684	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.77	7					4				1	3	4	3	41.384	37.686	2	2.537E-25	33959	160511_QHF_FH_JSI10i_1	219.43	179.52			1.0699	0.86723	90.379	11	10	Median	1.0699	0.86723	NaN	1	0	Median	1.7189	2.0461	123.52	3	3	Median	0.95857	0.96795	104.09	4	4	Median	0.59535	0.65481	90.928	3	3	Median	2876800000	1182900000	1693900000	417140000	180920000	236220000	834300000	377500000	456790000	939050000	352200000	586850000	686320000	272250000	414070000	39115	5227	36799	239759;239760;239761;239762;239763;239764;239765;239766;239767;239768;239769	321635;321636;321637;321638;321639;321640;321641;321642;321643;321644;321645;321646;321647;321648;321649;321650;321651	321647			17	
NLTEEERR	0	Unmodified	1045.5152	0.51523593	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		7.1561	6.9598	2	0.045606	4672	160511_QHF_FH_JSI11i_2	53.351	33.715			1.0766	1.1147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0766	1.1147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35474000	13356000	22118000	0	0	0	0	0	0	35474000	13356000	22118000	0	0	0	39116	1847	36800	239770	321652	321652			1	
NLTELEDEHLAK	1	Unmodified	1410.6991	0.69907354	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	46.211	45.149	2;3	1.5747E-05	39738	160511_QHF_FH_JSI10i_2	106.01	92.345			1.5342	1.7741	38.927	4	4	Median	NaN	NaN	NaN	0	0	Median	1.164	1.4222	NaN	1	1	Median	2.7617	2.7516	NaN	1	1	Median	1.4735	1.6178	44.312	2	2	Median	243460000	78540000	164920000	0	0	0	93714000	40380000	53334000	52007000	8727200	43279000	97739000	29433000	68306000	39117	285	36801	239771;239772;239773;239774	321653;321654;321655;321656	321656			4	
NLTEQNSYSNIPHEGK	1	Unmodified	1829.8544	0.85440498	5147	Q9NZB2;Q5T035	FAM120A;C9orf129	Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									1	3	3	32.687	31.831	2;3	1.0786E-16	28000	160511_QHF_FH_JSI10i_2	121.28	107.37			0.4624	0.48951	7.8636	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51067	0.5175	NaN	1	1	Median	0.41868	0.46303	NaN	1	1	Median	262600000	154630000	107960000	0	0	0	0	0	0	150200000	84952000	65243000	112400000	69681000	42721000	39118	5147	36802	239775;239776;239777;239778;239779;239780;239781	321657;321658;321659;321660;321661;321662;321663;321664	321664			8	
NLTGLNQR	0	Unmodified	914.49338	0.49337828	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	20.017	18.929	2	0.0022989	15577	160511_QHF_FH_JSI12i_2	79.116	47.827			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39119	493	36803	239782	321665	321665			1	
NLTGTAR	0	Unmodified	731.3926	0.3926016	1633;1634	P48729;P48730	CSNK1A1;CSNK1D	Casein kinase I isoform alpha;Casein kinase I isoform delta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.0241	6.6011	2	0.026198	4682	160511_QHF_FH_JSI10i_2	54.205	25.676			1.2505	1.3151	22.905	4	0	Median	1.2118	1.0347	NaN	1	0	Median	1.2905	1.5934	NaN	1	0	Median	1.5491	1.5718	NaN	1	0	Median	1.0027	1.1003	NaN	1	0	Median	827110000	423900000	403200000	154770000	71940000	82835000	186050000	117750000	68300000	262930000	118560000	144370000	223350000	115650000	107700000	39120	1633;1634	36804	239783;239784;239785;239786	321666;321667;321668	321668			3	
NLTHLESLHLEDNALK	1	Unmodified	1845.9585	0.95847612	2463	Q13641	TPBG	Trophoblast glycoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	73.158	72.664	2;3	0.016238	64892	160511_QHF_FH_JSI9i_1	33.796	24.216			1.0467	1.1081	20.425	7	0	Median	1.6522	1.3713	14.815	2	0	Median	0.93995	1.095	2.6696	2	0	Median	1.0932	1.0601	6.2653	2	0	Median	0.74537	0.77378	NaN	1	0	Median	3042600000	1305500000	1737100000	826450000	287530000	538920000	963970000	423850000	540120000	765140000	324550000	440590000	487060000	269580000	217470000	39121	2463	36805	239787;239788;239789;239790;239791;239792;239793	321669;321670;321671	321671			3	
NLTLDQMIR	0	Unmodified	1102.5805	0.58047873	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	4.93	1	4						1		3		2	1	64.837	61.979	2	0.00014605	53263	160511_QHF_FH_JSI12i_2	89.698	59.531			1.072	1.201	33.219	5	3	Median	1.0156	0.84451	26.667	3	2	Median	NaN	NaN	NaN	0	0	Median	1.7327	1.7498	NaN	1	1	Median	1.072	1.201	NaN	1	0	Median	467290000	203560000	263730000	180150000	79579000	100570000	0	0	0	169610000	65965000	103640000	117530000	58011000	59519000	39122	3217	36806	239794;239795;239796;239797;239798;239799	321672;321673;321674;321675;321676;321677	321673			6	
NLTLQLEQESNK	1	Unmodified	1415.7256	0.72562264	2421	Q13464	ROCK1	Rho-associated protein kinase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.7	1.03					1	2	2	2			4	1	2	59.645	49.474	2;3	4.7317E-05	26524	160513_QHF_FH_JSI12Kac_3	103.34	76.227			0.60732	0.61185	23.018	5	3	Median	NaN	NaN	NaN	0	0	Median	0.75485	0.90218	23.557	3	1	Median	0.60732	0.59688	NaN	1	1	Median	0.54895	0.60409	NaN	1	1	Median	30443000	20260000	10182000	0	0	0	26129000	17346000	8782700	1959900	1281300	678640	2353600	1632600	721000	39123	2421	36807	239800;239801;239802;239803;239804;239805;239806	321678;321679;321680;321681;321682;321683;321684	321680			7	
NLTNPNTVIILIGNK	1	Unmodified	1622.9356	0.93555583	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.52	6.7	1	10	4					7	11	6	8	12	7	85.606	80.333	2;3	1.8128E-23	41491	160513_QHF_FH_JSI11Kac_6	202.29	177.44			0.98197	1.0165	74.216	29	25	Median	1.3587	1.1609	72.308	5	3	Median	0.74654	0.87133	65.705	7	5	Median	1.3504	1.2889	70.354	11	11	Median	0.45172	0.49293	95.556	6	6	Median	2247300000	1125400000	1121900000	367460000	161520000	205940000	728310000	448120000	280190000	893510000	338030000	555480000	258040000	177730000	80316000	39124	1938	36808	239807;239808;239809;239810;239811;239812;239813;239814;239815;239816;239817;239818;239819;239820;239821;239822;239823;239824;239825;239826;239827;239828;239829;239830;239831;239832;239833;239834;239835;239836;239837;239838;239839	321685;321686;321687;321688;321689;321690;321691;321692;321693;321694;321695;321696;321697;321698;321699;321700;321701;321702;321703;321704;321705;321706;321707;321708;321709;321710;321711;321712;321713;321714;321715;321716;321717;321718;321719;321720	321693			36	
NLTPMNYNIFFHLLK	1	Oxidation (M)	1879.9655	0.96547575	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	90.074	80.679	3	3.6803E-33	45160	160513_QHF_FH_JSI11Kac_6	163.99	146.71			1.5121	1.5144	25.235	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9009	1.8102	NaN	1	0	Median	1.2029	1.2669	NaN	1	0	Median	483370000	182240000	301130000	0	0	0	0	0	0	238250000	72243000	166000000	245120000	110000000	135120000	39125	4736	36809	239840;239841	321721;321722;321723	321721		2523	3	
NLTPMNYNIFFHLLK	1	Unmodified	1863.9706	0.97056113	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	93.299	84.692	2;3	1.3503E-24	47501	160513_QHF_FH_JSI11Kac_6	157.38	146.1			1.2493	1.1259	78.922	6	2	Median	0.51272	0.43079	126.98	2	1	Median	0.62746	0.74373	NaN	1	0	Median	1.2914	1.2288	3.4764	2	1	Median	1.4011	1.4631	NaN	1	0	Median	3526400000	1550800000	1975600000	1005900000	495770000	510120000	779250000	409690000	369560000	1172800000	420270000	752560000	568460000	225090000	343370000	39126	4736	36809	239842;239843;239844;239845;239846;239847	321724;321725;321726;321727;321728;321729;321730;321731;321732;321733	321724			10	
NLTQDEMQR	0	Unmodified	1133.5135	0.51352137	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.21	4	3					5			1	4	4	3	20.806	16.884	2	6.5933E-12	14646	160511_QHF_FH_JSI11i_1	167.04	119.19			0.77282	0.83416	36.381	9	3	Median	1.0704	0.88538	NaN	1	0	Median	0.74598	0.87013	49.314	3	1	Median	0.84059	0.82373	1.78	2	0	Median	0.67859	0.72249	49.3	3	2	Median	1878100000	1030900000	847140000	563540000	284050000	279490000	473100000	300690000	172420000	413880000	243290000	170590000	427550000	202900000	224640000	39127	2502	36810	239848;239849;239850;239851;239852;239853;239854;239855;239856;239857;239858;239859	321734;321735;321736;321737;321738;321739;321740;321741;321742;321743;321744;321745;321746;321747	321734			14	
NLTQDEMQR	0	Oxidation (M)	1149.5084	0.508436	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	17.759	17.307	2	9.3754E-06	14427	160511_QHF_FH_JSI9i_1	113.26	85.082			0.889	0.81999	66.372	4	1	Median	1.1242	0.91812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93476	0.8985	113.47	2	1	Median	0.70303	0.73235	NaN	1	0	Median	379530000	200620000	178910000	103530000	51193000	52339000	0	0	0	165800000	90638000	75164000	110200000	58793000	51407000	39128	2502	36810	239860;239861;239862;239863;239864	321748;321749;321750;321751;321752;321753;321754	321753		1980	7	
NLTSNMWR	0	Unmodified	1020.4811	0.48109903	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			41.309	40.302	2	0.007852	35455	160511_QHF_FH_JSI10i_2	68.214	44.421			1.0037	1.0248	18.912	2	2	Median	1.0638	0.89654	NaN	1	1	Median	0.94695	1.1715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118040000	50431000	67609000	40067000	19174000	20893000	77974000	31257000	46716000	0	0	0	0	0	0	39129	2997	36811	239865;239866	321755;321756	321756			2	
NLTVILSDASAPGEGEHK	1	Unmodified	1836.9218	0.92175626	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	63.402	62.441	2;3	6.1198E-11	53532	160511_QHF_FH_JSI12i_2	147.18	115.54			0.27288	0.33195	200.19	5	5	Median	1.7112	1.4837	279.74	2	2	Median	1.3535	1.6548	227.19	2	2	Median	0.22685	0.22363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252170000	165180000	86989000	66199000	28807000	37391000	76517000	39571000	36947000	48359000	44220000	4138600	61094000	52582000	8512800	39130	4628	36812	239867;239868;239869;239870;239871;239872;239873	321757;321758;321759;321760;321761;321762;321763	321757			7	
NLTVNYKK	2	Acetyl (K)	1020.5604	0.56039521	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			41.565	31.583	2	0.0089003	18215	160513_QHF_FH_JSI10Kac_4	83.206	54.988			0.23044	0.27567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23044	0.27567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4901700	3725200	1176500	0	0	0	4901700	3725200	1176500	0	0	0	0	0	0	39131	5743	36813	239874	321764	321764	3542		1	
NLTWTLSNLCR	0	Unmodified	1376.6871	0.68706906	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		75.844	75.157	2	5.133E-05	66013	160511_QHF_FH_JSI11i_2	103.01	0			0.42226	0.47254	10.865	2	2	Median	NaN	NaN	NaN	0	0	Median	0.41857	0.51028	NaN	1	1	Median	0.42598	0.4376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	284020000	216280000	67746000	0	0	0	126260000	96039000	30225000	157760000	120240000	37521000	0	0	0	39132	1766	36814	239875;239876	321765;321766	321765			2	
NLTYSAPLYVDITK	1	Unmodified	1596.8399	0.83992412	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	80.765	80.099	2	0.0014962	69151	160511_QHF_FH_JSI12i_2	76.522	56.219			0.48134	0.54872	23.204	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.52311	0.62156	17.627	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78676	0.87239	NaN	1	1	Median	47435000	35037000	12398000	0	0	0	35585000	27035000	8549800	0	0	0	11850000	8002100	3848200	39133	1366	36815	239877;239878;239879	321767;321768;321769	321767			3	
NLVAFVSQEAGNR	0	Unmodified	1403.7157	0.71572665	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		10	2							2	3	3	4	67.929	67.129	2;3	7.705E-06	57683	160511_QHF_FH_JSI12i_2	129.88	102.13			4.2321	4.0087	68.695	9	9	Median	2.3028	1.9807	NaN	1	1	Median	2.5581	3.1748	90.491	2	2	Median	4.2321	4.0087	44.481	3	3	Median	3.4678	8.6859	95.734	3	3	Plateau	2286100000	465790000	1820300000	360390000	89738000	270650000	490650000	126110000	364550000	863300000	125600000	737700000	571780000	124350000	447440000	39134	4410	36816	239880;239881;239882;239883;239884;239885;239886;239887;239888;239889;239890;239891	321770;321771;321772;321773;321774;321775;321776;321777;321778;321779;321780;321781;321782;321783	321771			14	
NLVAHGQAFSK	1	Unmodified	1170.6146	0.61455605	3079	Q6NXE6	ARMC6	Armadillo repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.846	21.636	2	0.041697	17944	160511_QHF_FH_JSI12i_2	45.137	24.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6015800	6015800	0	0	0	0	0	0	0	0	0	0	6015800	6015800	0	39135	3079	36817	239892	321784	321784			1	
NLVCTDLFTR	0	Unmodified	1237.6125	0.61250714	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			66.99	66.162	2	0.0025319	58724	160511_QHF_FH_JSI10i_2	62.303	40.217			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39136	1271	36818	239893	321785	321785			1	
NLVDFTFVENVVHGHILAAEQLSR	0	Unmodified	2707.4082	0.40819867	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.365	86.923	4	1.4493E-07	47352	160513_QHF_FH_JSI12Kac_6	69.528	62.576			0.82975	0.87472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82975	0.87472	NaN	1	0	Median	251770000	116560000	135210000	0	0	0	0	0	0	0	0	0	251770000	116560000	135210000	39137	2701	36819	239894	321786	321786			0	
NLVDNITGQR	0	Unmodified	1128.5887	0.58873523	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	1	3	1	42.52	41.643	2	1.5651E-05	35809	160511_QHF_FH_JSI11i_2	100.02	74.123			0.99079	0.93271	60.297	6	3	Median	1.0778	0.90321	40.463	2	2	Median	0.58359	0.72351	NaN	1	0	Median	1.5156	1.4792	109.19	2	1	Median	1.2083	1.3209	NaN	1	0	Median	477790000	234970000	242820000	124420000	64996000	59427000	69653000	45536000	24117000	203450000	86199000	117250000	80261000	38235000	42026000	39138	2636	36820	239895;239896;239897;239898;239899;239900;239901	321787;321788;321789;321790;321791;321792;321793	321791			6	
NLVDNVAK	1	Unmodified	871.47633	0.47633123	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.015	24.477	2	0.022919	21738	160511_QHF_FH_JSI12i_1	54.611	34.908			0.56832	0.59195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56832	0.59195	NaN	1	1	Median	148530000	89513000	59016000	0	0	0	0	0	0	0	0	0	148530000	89513000	59016000	39139	4559	36821	239902	321794	321794			1	
NLVDPFVEVSFAGK	1	Unmodified	1520.7875	0.78749461	5161	Q9NZM1;O75923	MYOF;DYSF	Myoferlin;Dysferlin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		95.625	95.42	2	1.503E-05	83734	160511_QHF_FH_JSI11i_2	84.718	50.185			0.8892	0.91249	29.096	2	2	Median	0.87136	0.74281	NaN	1	1	Median	0.90742	1.1209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41372000	18675000	22697000	21503000	10193000	11310000	19869000	8481800	11387000	0	0	0	0	0	0	39140	5161	36822	239903;239904;239905	321795;321796;321797	321796			3	
NLVDSYVAIINK	1	Unmodified	1347.7398	0.73981614	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		2	3	2	1	80.181	77.112	2	2.5554E-05	68250	160511_QHF_FH_JSI12i_2	138.65	119.38			1.2213	1.2649	25.674	8	2	Median	1.1729	0.99186	14.547	2	0	Median	1.0352	1.2399	29.797	3	1	Median	1.5616	1.5412	24.101	2	1	Median	1.1593	1.2905	NaN	1	0	Median	437460000	207460000	230010000	72620000	30256000	42364000	126840000	73329000	53508000	131760000	59415000	72342000	106250000	44456000	61793000	39141	1711	36823	239906;239907;239908;239909;239910;239911;239912;239913	321798;321799;321800;321801;321802;321803;321804;321805;321806;321807;321808;321809	321800			12	
NLVEELPQPR	0	Unmodified	1193.6404	0.64043645	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		54.805	54.031	2	0.00032479	46438	160511_QHF_FH_JSI11i_2	78.06	51.114			1.1714	1.0902	0.18274	2	0	Median	1.2962	1.0916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0586	1.0888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7070200000	3319500000	3750700000	3166900000	1418200000	1748700000	0	0	0	3903300000	1901300000	2002000000	0	0	0	39142	4543	36824	239914;239915	321810;321811	321811			2	
NLVELAELELK	1	Unmodified	1269.718	0.71801807	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.675	97.475	2	1.1118E-05	86076	160511_QHF_FH_JSI10i_2	109.42	70.397			0.019635	0.02149	57.147	4	4	Linear	0.078996	0.066345	NaN	1	1	Median	0.03091	0.03645	NaN	1	1	Median	0.016947	0.017366	NaN	1	1	Median	0.023043	0.025172	NaN	1	1	Median	65007000	63196000	1810900	7867900	7341300	526540	16884000	16618000	265830	21230000	20448000	781180	19025000	18788000	237350	39143	5437	36825	239916;239917;239918;239919	321812;321813;321814;321815;321816;321817	321817			6	
NLVENLFSNGHIK	1	Unmodified	1483.7783	0.77832691	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.158	70.548	3	0.057339	61841	160511_QHF_FH_JSI11i_2	24.191	3.728			0.27165	0.2643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27165	0.2643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9567800	7838300	1729600	0	0	0	0	0	0	9567800	7838300	1729600	0	0	0	39144	3516	36826	239920	321818	321818			1	
NLVEQHIQDIVVHYTFNK	1	Unmodified	2196.1328	0.13275209	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.28		18	6						10	9	7	7	11	87.407	84.486	3;4	3.6593E-44	39842	160513_QHF_FH_JSI12Kac_6	182.15	158.7			0.79309	0.80876	53.631	31	13	Median	0.83792	0.70403	58.733	8	3	Median	0.40149	0.48365	54.018	5	3	Median	1.2628	1.2494	40.069	7	2	Median	0.71012	0.80876	56.758	11	5	Median	5338200000	2972900000	2365200000	1016600000	408890000	607700000	1984500000	1416300000	568230000	829660000	352710000	476950000	1507400000	795020000	712340000	39145	816	36827	239921;239922;239923;239924;239925;239926;239927;239928;239929;239930;239931;239932;239933;239934;239935;239936;239937;239938;239939;239940;239941;239942;239943;239944;239945;239946;239947;239948;239949;239950;239951;239952;239953;239954	321819;321820;321821;321822;321823;321824;321825;321826;321827;321828;321829;321830;321831;321832;321833;321834;321835;321836;321837;321838;321839;321840;321841;321842;321843;321844;321845;321846;321847;321848;321849;321850;321851;321852;321853;321854;321855;321856;321857;321858;321859;321860;321861;321862;321863;321864;321865;321866;321867;321868;321869;321870	321865			52	
NLVESELQR	0	Unmodified	1086.5669	0.56693715	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.854	35.51	2	0.0041286	30100	160511_QHF_FH_JSI12i_2	68.224	54.066			1.2377	1.3113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2377	1.3113	NaN	1	1	Median	23413000	11282000	12131000	0	0	0	0	0	0	0	0	0	23413000	11282000	12131000	39146	3094	36828	239955	321871	321871			1	
NLVFSDGYVVK	1	Unmodified	1239.6499	0.6499385	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.51	3	1						1			1	3	1	67.006	64.472	2	0.00081222	56232	160511_QHF_FH_JSI11i_2	79.986	68.495			1.8096	1.8438	35.434	5	5	Linear	NaN	NaN	NaN	0	0	Median	1.0893	1.2374	NaN	1	1	Median	1.8812	1.8434	45.543	3	3	Plateau	0.86226	0.85577	NaN	1	1	Median	174500000	86458000	88044000	0	0	0	31467000	16869000	14598000	128870000	63338000	65532000	14166000	6251100	7914400	39147	2669	36829	239956;239957;239958;239959;239960	321872;321873;321874;321875;321876	321875			5	
NLVGALDEGDGESAAGSGGGR	0	Unmodified	1887.8559	0.85586154	2860	Q53LP3	SOWAHC	Ankyrin repeat domain-containing protein SOWAHC	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.215	46.556	2	0.00054282	42303	160511_QHF_FH_JSI12i_1	75.462	61.556			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39148	2860	36830	239961	321877	321877			1	
NLVHSGATK	1	Unmodified	925.49813	0.49812931	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9	7		1							1	1			1	6.9897	3.1523	2	0.011813	3869	160511_QHF_FH_JSI12i_2	57.96	22.604			2.694	2.6411	33.598	2	2	Median	2.3884	2.0826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0388	3.3493	NaN	1	1	Median	61284000	15497000	45786000	2265800	836920	1428900	0	0	0	0	0	0	59018000	14660000	44358000	39149	2475	36831	239962;239963	321878;321879	321878			2	
NLVLAGIK	1	Unmodified	826.52764	0.52763852	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	52.791	51.669	2	0.0093738	44226	160511_QHF_FH_JSI12i_2	64.757	21.691			0.28856	0.35486	31.632	3	3	Median	0.24785	0.21638	NaN	1	1	Median	0.28856	0.35486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36204	0.38991	NaN	1	1	Median	84818000	57989000	26829000	18987000	14680000	4307000	34189000	25359000	8829400	0	0	0	31642000	17949000	13692000	39150	5	36832	239964;239965;239966	321880;321881;321882	321880			3	
NLVLLVR	0	Unmodified	825.54362	0.54362294	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11	6.38		1						1	1	1	1	1		71.756	61.728	2	0.0099712	54167	160511_QHF_FH_JSI10i_2	67.035	18.861			0.21858	0.19446	54.452	2	2	Median	0.34112	0.28579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14007	0.13231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56537000	44678000	11860000	4074400	2939500	1134900	0	0	0	52463000	41738000	10725000	0	0	0	39151	4684	36833	239967;239968;239969	321883;321884;321885	321885			3	
NLVMNTGPYYFVK	1	Unmodified	1544.7697	0.76973606	569	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		79.306	78.676	2	1.4267E-09	69136	160511_QHF_FH_JSI11i_2	110.38	82.954			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39152	569	36834	239970	321886	321886			1	
NLVNDDDAIVAASK	1	Unmodified	1443.7205	0.72053726	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	5									1	2		2	49.628	48.95	2	0.00069564	44443	160511_QHF_FH_JSI12i_1	89.013	62.499			1.2352	1.1901	43.35	5	4	Median	1.2352	1.0048	NaN	1	0	Median	1.2044	1.4245	25.431	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92504	0.96611	71.906	2	2	Median	304680000	149210000	155470000	58854000	25713000	33140000	134500000	68449000	66054000	0	0	0	111320000	55043000	56276000	39153	2227	36835	239971;239972;239973;239974;239975	321887;321888;321889;321890;321891	321887			5	
NLVNKHSETFTR	1	Acetyl (K)	1486.7528	0.75284044	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		40.133	31.042	3	0.00030696	17365	160513_QHF_FH_JSI10Kac_6	77.078	62.202			0.58619	0.61111	108.66	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1552	1.3177	NaN	1	0	Median	0.29744	0.28342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40752000	26015000	14737000	0	0	0	13005000	6064200	6940700	27748000	19951000	7796300	0	0	0	39154	5448	36836	239976;239977	321892;321893;321894;321895	321895	3427		4	
NLVPEEADEHLFALEK	1	Unmodified	1852.9207	0.92069363	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.325	75.692	3	0.01929	66504	160511_QHF_FH_JSI11i_2	45.084	34.14			1.345	1.3455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.345	1.3455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53341000	18459000	34881000	0	0	0	0	0	0	53341000	18459000	34881000	0	0	0	39155	3770	36837	239978	321896	321896			0	
NLVPGESVYGEK	1	Unmodified	1290.6456	0.6455814	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	44.21	43.412	2	0.00038234	39025	160511_QHF_FH_JSI10i_1	70.942	24.05			0.69537	0.66413	39.051	7	3	Median	0.735	0.62036	9.6418	2	1	Median	0.68225	0.78935	NaN	1	0	Median	0.80979	0.7996	32.288	2	1	Median	0.43053	0.45944	66.132	2	1	Median	851440000	469810000	381630000	151540000	79019000	72519000	200810000	112370000	88447000	253650000	124870000	128790000	245440000	153560000	91879000	39156	1203	36838	239979;239980;239981;239982;239983;239984;239985	321897;321898;321899;321900;321901;321902;321903;321904;321905;321906;321907;321908	321903			12	
NLVQCGDFPHLLVYGPSGAGKK	2	Unmodified	2356.1998	0.1997858	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		73.873	73.873	4	0.045008	66012	160511_QHF_FH_JSI11i_3	19.398	14.141			0.74127	0.71041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74127	0.71041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55392000	29530000	25862000	0	0	0	0	0	0	55392000	29530000	25862000	0	0	0	39157	1506	36839	239986	321909	321909			1	
NLVTEDVMR	0	Unmodified	1075.5332	0.53319418	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.7	4	4	4				3	2		4	4	4	5	46.648	42.953	2	1.3125E-05	39252	160511_QHF_FH_JSI12i_1	110.12	84.221			0.98009	1.053	22.718	17	2	Median	1.6024	1.3182	22.374	4	0	Median	0.89201	1.0198	4.5526	4	0	Linear	1.135	1.1289	21.71	4	0	Median	0.83438	0.91849	25.727	5	2	Median	15618000000	7557600000	8060700000	2572300000	1207200000	1365100000	3663200000	1941400000	1721800000	5202900000	2536800000	2666100000	4179900000	1872200000	2307700000	39158	856	36840	239987;239988;239989;239990;239991;239992;239993;239994;239995;239996;239997;239998;239999;240000;240001;240002;240003	321910;321911;321912;321913;321914;321915;321916;321917;321918;321919;321920;321921;321922;321923;321924;321925;321926;321927;321928;321929;321930;321931;321932;321933;321934;321935;321936;321937;321938;321939;321940;321941;321942;321943;321944;321945;321946	321919			37	
NLVTEDVMR	0	Oxidation (M)	1091.5281	0.5281088	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	6.05	4	4	4			4	3	4		5	8	5	5	31.902	26.191	2	0.00027193	24555	160511_QHF_FH_JSI10i_1	86.67	69.894			1.0024	1.0123	19.101	21	3	Median	1.4388	1.1281	18.409	5	1	Median	0.82523	0.98847	28.269	6	2	Median	1.0063	1.013	10.854	5	0	Median	0.92278	1.0123	10.607	5	0	Median	1719000000	805690000	913290000	372000000	156670000	215330000	476720000	244050000	232670000	407230000	180780000	226450000	463030000	224190000	238840000	39159	856	36840	240004;240005;240006;240007;240008;240009;240010;240011;240012;240013;240014;240015;240016;240017;240018;240019;240020;240021;240022;240023;240024;240025;240026	321947;321948;321949;321950;321951;321952;321953;321954;321955;321956;321957;321958;321959;321960;321961;321962;321963;321964;321965;321966;321967;321968;321969;321970;321971;321972;321973;321974;321975;321976;321977;321978;321979;321980	321960		390	33	
NLVTEVLGALEAK	1	Unmodified	1355.766	0.76603089	4113	Q96HR9	REEP6	Receptor expression-enhancing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	102.45	102.36	2	2.177E-12	88256	160511_QHF_FH_JSI12i_2	122.33	103.65			1.0112	0.94143	20.439	4	2	Median	0.96595	0.82354	NaN	1	0	Median	0.64649	0.78075	NaN	1	0	Median	1.114	1.1319	7.1342	2	2	Median	NaN	NaN	NaN	0	0	Median	567290000	291970000	275320000	85245000	45393000	39852000	120380000	68995000	51387000	361670000	177580000	184080000	0	0	0	39160	4113	36841	240027;240028;240029;240030;240031	321981;321982;321983;321984;321985;321986	321981			6	
NLVTGDHIPTPQDLPQR	0	Unmodified	1899.9803	0.9802742	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	60.01	59.091	3	0.00015947	50703	160511_QHF_FH_JSI12i_2	48.848	37.568			0.91921	0.98674	45.786	4	2	Median	0.50237	0.4302	NaN	1	1	Median	0.94831	1.1663	NaN	1	1	Median	0.891	0.88921	NaN	1	0	Median	0.98561	1.095	NaN	1	0	Median	148870000	76609000	72263000	24724000	18682000	6042100	33689000	16955000	16734000	53773000	25531000	28242000	36685000	15441000	21245000	39161	373	36842	240032;240033;240034;240035	321987;321988;321989;321990;321991;321992;321993	321988			7	
NLVTGDHIPTPQDLPQRK	1	Unmodified	2028.0752	0.075237214	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	4	4	1	52.815	52.085	3;4	5.8697E-06	46005	160511_QHF_FH_JSI11i_3	88.56	72.617			0.96761	0.99305	25.642	10	2	Median	0.98027	0.82412	NaN	1	0	Median	1.005	1.1555	19.422	4	1	Median	0.83045	0.78732	26.188	4	1	Median	1.0322	1.0576	NaN	1	0	Median	1046100000	539210000	506890000	75216000	39272000	35944000	483970000	233200000	250770000	420530000	236400000	184130000	66386000	30340000	36046000	39162	373	36843	240036;240037;240038;240039;240040;240041;240042;240043;240044;240045	321994;321995;321996;321997;321998;321999;322000;322001;322002;322003;322004;322005;322006;322007;322008;322009;322010	321999			17	
NLVTISYPSGIPDGQLQAYRK	1	Unmodified	2319.2223	0.22229538	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	77.483	76.883	3	8.0795E-06	66689	160511_QHF_FH_JSI12i_3	84.499	57.174			1.1389	1.1607	27.504	6	4	Median	0.98353	0.84363	NaN	1	0	Median	1.0806	1.3336	NaN	1	1	Median	1.2023	1.1607	6.202	2	1	Median	0.96428	1.0063	49.869	2	2	Median	133300000	60300000	72998000	23652000	10386000	13266000	24737000	11710000	13027000	46111000	22554000	23557000	38797000	15649000	23148000	39163	5013	36844	240046;240047;240048;240049;240050;240051	322011;322012;322013;322014;322015;322016	322016			6	
NLVVAGTSQLYVYR	0	Unmodified	1581.8515	0.85149185	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.984	70.084	2	0.0010581	60425	160511_QHF_FH_JSI12i_2	99.215	74.424			1.4829	0.83449	37.313	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.69559	0.83449	NaN	1	1	Median	1.5685	1.5879	NaN	1	0	Median	0.73396	0.82961	NaN	1	1	Median	38557000	23133000	15424000	0	0	0	7464800	4950700	2514200	19877000	10008000	9868400	11215000	8173600	3041800	39164	2297	36845	240052;240053;240054	322017;322018;322019	322017			3	
NLVVIPK	1	Unmodified	781.50617	0.5061748	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.84	8	6	3				2			5	6	4	4	47.659	45.775	2	0.012077	41004	160511_QHF_FH_JSI11i_1	75.311	32.31			1.7707	1.803	89.226	19	15	Median	2.169	1.803	103.9	5	4	Median	0.76752	0.9093	99.672	6	5	Median	1.4313	1.389	92.393	4	3	Median	1.2353	1.372	86.152	4	3	Median	3616900000	1778400000	1838500000	814330000	386960000	427370000	1148500000	646370000	502100000	958780000	397200000	561570000	695350000	347870000	347490000	39165	1067	36846	240055;240056;240057;240058;240059;240060;240061;240062;240063;240064;240065;240066;240067;240068;240069;240070;240071;240072;240073	322020;322021;322022;322023;322024;322025;322026;322027;322028;322029;322030;322031;322032;322033;322034;322035;322036;322037;322038;322039;322040;322041;322042;322043	322020			24	
NLWIFVSK	1	Unmodified	1005.5648	0.56475231	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.944	76.694	2	0.016852	42195	160513_QHF_FH_JSI11Kac_6	67.494	56.784			0.14194	0.14135	65.178	4	3	Median	0.067509	0.058406	NaN	1	1	Median	0.23422	0.28168	NaN	1	1	Median	0.13366	0.12577	NaN	1	1	Median	0.15073	0.15886	NaN	1	0	Median	470360000	384200000	86162000	115340000	109800000	5537700	149390000	111710000	37682000	137920000	109510000	28411000	67706000	53176000	14531000	39166	183	36847	240074;240075;240076;240077	322044;322045;322046;322047	322044			4	
NLWPFVSDPAPTASSQAAVSAR	0	Unmodified	2271.1284	0.128395	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		89.2	88.661	2;3	0.023412	77981	160511_QHF_FH_JSI11i_2	41.092	20.428			0.77648	0.80093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77648	0.80093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21395000	11269000	10127000	0	0	0	0	0	0	21395000	11269000	10127000	0	0	0	39167	2716	36848	240078;240079	322048;322049	322048			1	
NLWVLVVGR	0	Unmodified	1054.6287	0.62874955	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	86.584	78.683	2	0.00014496	43009	160513_QHF_FH_JSI9Kac_6	97.093	74.353			0.43442	0.42258	186.35	5	5	Median	0.8951	0.77625	112.04	2	2	Median	1.0809	1.2713	343.61	2	2	Median	0.43442	0.42258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	534120000	303160000	230960000	160690000	73064000	87631000	253590000	138310000	115280000	86344000	58293000	28051000	33494000	33494000	0	39168	1052	36849	240080;240081;240082;240083;240084;240085	322050;322051;322052;322053;322054;322055	322051			6	
NLYAANGIGAVLAHK	1	Unmodified	1510.8256	0.82561145	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	2	1	2	65.891	65.083	3	0.00023233	57186	160511_QHF_FH_JSI9i_2	78.814	69.026			1.4438	1.5329	217.81	6	6	Median	1.7613	1.4922	229.11	2	2	Median	1.6904	2.0623	240.22	2	2	Median	0.057879	0.056761	NaN	1	1	Median	6.0096	6.2287	NaN	1	1	Median	217820000	128320000	89498000	53667000	23041000	30627000	80149000	49455000	30694000	41640000	34583000	7057400	42362000	21242000	21121000	39169	3115	36850	240086;240087;240088;240089;240090;240091;240092	322056;322057;322058;322059;322060;322061;322062	322057			7	
NLYDIGEQLDSEDLASLK	1	Unmodified	2021.9793	0.97933072	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	94.657	94.432	2	8.4105E-09	85508	160511_QHF_FH_JSI10i_1	132.08	93.679			0.11278	0.1016	18.413	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.1206	0.13927	NaN	1	1	Median	0.10547	0.10089	NaN	1	1	Median	0.10151	0.1016	NaN	1	1	Median	66788000	55605000	11182000	0	0	0	27192000	21952000	5240100	22724000	19572000	3152000	16871000	14081000	2790300	39170	2575	36851	240093;240094;240095	322063;322064;322065;322066	322066			4	
NLYEGLVMTEVQIQK	1	Unmodified	1763.9128	0.91277148	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	3	3	2	86.829	86.195	2;3	6.8813E-07	74475	160511_QHF_FH_JSI12i_2	139.89	105.51			0.54671	0.53563	88.71	10	10	Median	1.2601	1.1023	108.06	2	2	Median	0.19049	0.23215	114.45	3	3	Plateau	0.44443	0.44799	107.17	3	3	Median	0.8907	0.95143	75.255	2	2	Median	179340000	100960000	78381000	26147000	10437000	15710000	44125000	29735000	14390000	74033000	40279000	33754000	35036000	20509000	14527000	39171	4832	36852	240096;240097;240098;240099;240100;240101;240102;240103;240104;240105	322067;322068;322069;322070;322071;322072;322073;322074;322075;322076	322067			10	
NLYFLYLIELR	0	Unmodified	1455.8126	0.81258715	4109	Q96HE7;Q86YB8	ERO1L;ERO1LB	ERO1-like protein alpha;ERO1-like protein beta	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		97.852	90.039	2	4.1194E-18	50931	160513_QHF_FH_JSI9Kac_6	170.99	135.77			0.93852	0.96294	218.96	4	4	Median	9.9792	8.5189	NaN	1	1	Median	0.69504	0.81444	260.39	2	2	Median	0.19612	0.18059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	502870000	283460000	219410000	176790000	80778000	96008000	265660000	148570000	117090000	60431000	54120000	6311700	0	0	0	39172	4109	36853	240106;240107;240108;240109;240110	322077;322078;322079;322080;322081	322079			5	
NLYHNLCTSLFPTIHGNDEVK	1	Unmodified	2471.1903	0.19034333	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									4	1	74.97	74.97	3;4	8.7759E-08	66961	160511_QHF_FH_JSI11i_3	88.983	81.537			0.44551	0.41012	65.585	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44551	0.41012	65.585	4	3	Linear	NaN	NaN	NaN	0	0	Median	223820000	137620000	86203000	0	0	0	0	0	0	223820000	137620000	86203000	0	0	0	39173	2545	36854	240111;240112;240113;240114;240115	322082;322083;322084;322085;322086;322087	322083			6	
NLYIISVK	1	Unmodified	948.56442	0.56441796	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	4.69	1	1	2			2	3	10	7	7	6	6	7	68.941	60.077	1;2	0.00077043	33849	160513_QHF_FH_JSI11Kac_6	101.6	62.809			1.7567	1.3248	134.62	26	19	Median	1.4635	1.1871	126.87	7	4	Median	1.7132	1.8314	189.06	6	4	Median	1.5849	1.5447	145.39	6	4	Median	2.1086	2.2712	102.11	7	7	Median	28182000000	13137000000	15045000000	7213900000	3014000000	4199900000	7005000000	4408500000	2596500000	9862300000	4301300000	5561000000	4101100000	1413600000	2687500000	39174	2022	36855	240116;240117;240118;240119;240120;240121;240122;240123;240124;240125;240126;240127;240128;240129;240130;240131;240132;240133;240134;240135;240136;240137;240138;240139;240140;240141	322088;322089;322090;322091;322092;322093;322094;322095;322096;322097;322098;322099;322100;322101;322102;322103;322104;322105;322106;322107;322108;322109;322110;322111;322112;322113;322114;322115;322116;322117	322097			30	
NLYPSSSPYTR	0	Unmodified	1283.6146	0.61461563	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.47	2	5					1	4		3	4	3	2	39.767	35.266	2	2.5083E-06	30287	160511_QHF_FH_JSI12i_2	112.3	82.822			1.1581	1.1923	28.846	10	2	Median	1.6257	1.3666	9.3582	2	0	Median	0.96497	1.1485	45.541	3	1	Median	1.2596	1.2377	31.983	3	1	Median	1.0013	1.0885	6.0265	2	0	Median	824660000	390730000	433930000	160460000	71770000	88690000	202730000	92465000	110260000	282760000	136200000	146560000	178710000	90296000	88414000	39175	5548	36856	240142;240143;240144;240145;240146;240147;240148;240149;240150;240151;240152;240153	322118;322119;322120;322121;322122;322123;322124;322125;322126;322127;322128;322129;322130;322131;322132;322133	322120			16	
NLYPSYK	1	Unmodified	883.44397	0.44396847	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.51	3	3					1	3		1	3	3	3	33.088	28.792	2	0.0093343	24485	160511_QHF_FH_JSI12i_2	79.597	42.576			1.1392	1.199	32.741	10	1	Median	1.4051	1.2204	NaN	1	0	Median	0.76863	0.89488	32.824	3	1	Plateau	1.0026	1.0016	43.25	3	0	Median	1.1723	1.2886	22.972	3	0	Median	717260000	348100000	369170000	122910000	55092000	67820000	73592000	36355000	37237000	291780000	158210000	133560000	228980000	98436000	130550000	39176	5536	36857	240154;240155;240156;240157;240158;240159;240160;240161;240162;240163	322134;322135;322136;322137;322138;322139;322140;322141	322135			8	
NLYSDDIPHALR	0	Unmodified	1412.7048	0.70482762	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	1	2	2	52.497	51.789	2;3	6.372E-07	44471	160511_QHF_FH_JSI12i_2	105.86	78.092			1.1192	1.0403	19.502	5	1	Median	1.545	1.3301	18.116	2	1	Median	0.79975	0.98526	NaN	1	0	Median	0.99474	0.97804	8.7286	2	0	Median	NaN	NaN	NaN	0	0	Median	1445200000	715480000	729730000	359710000	159080000	200620000	346160000	204040000	142130000	739330000	352360000	386980000	0	0	0	39177	1909	36858	240164;240165;240166;240167;240168;240169;240170	322142;322143;322144;322145;322146;322147;322148;322149;322150	322144			9	
NLYSDDIPHALREK	1	Unmodified	1669.8424	0.84238373	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	47.171	47.051	3	9.8743E-05	40170	160511_QHF_FH_JSI12i_3	72.417	66.876			1.1386	1.1105	33.142	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5083	1.4037	NaN	1	1	Median	0.85945	0.87848	NaN	1	0	Median	167870000	82320000	85549000	0	0	0	0	0	0	67532000	29601000	37932000	100340000	52719000	47617000	39178	1909	36859	240171;240172	322151;322152	322152			2	
NLYVTFPIPDLQK	1	Unmodified	1546.8395	0.83953018	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	100.26	100.15	2	4.6191E-05	86188	160511_QHF_FH_JSI12i_2	113.22	96.593			0.73467	0.77485	41.99	5	1	Median	0.90653	0.77485	NaN	1	0	Median	0.38608	0.46356	58.291	2	1	Median	0.8395	0.83334	NaN	1	0	Median	0.73467	0.80301	NaN	1	0	Median	266820000	171060000	95762000	41186000	22716000	18470000	98668000	71802000	26866000	65973000	37654000	28319000	60994000	38888000	22106000	39179	1060	36860	240173;240174;240175;240176;240177	322153;322154;322155;322156;322157;322158;322159;322160;322161	322154			9	
NMACVQR	0	Unmodified	877.38984	0.38984118	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	2	3	10.539	10.081	2	0.0079317	7936	160511_QHF_FH_JSI10i_2	87.582	50.995			1.194	1.3382	129.45	10	8	Median	0.87571	0.74368	148.54	2	2	Median	1.0438	1.2419	146.25	3	2	Median	1.2477	1.2739	174.36	2	2	Median	1.3658	1.4419	148.96	3	2	Median	4247900000	1949500000	2298500000	330250000	170060000	160190000	1073100000	438570000	634530000	1692200000	788260000	903930000	1152400000	552580000	599820000	39180	1470	36861	240178;240179;240180;240181;240182;240183;240184;240185;240186;240187	322162;322163;322164;322165;322166;322167;322168;322169;322170	322169			9	
NMADLMWSTVK	1	Unmodified	1294.605	0.60497892	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.673	78.495	2	0.025078	67837	160511_QHF_FH_JSI12i_2	42.336	27.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39181	3198	36862	240188	322171	322171			1	
NMAEQIIQEIYSQIQSK	1	Unmodified	2022.0092	0.0091910629	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	6.6		8	4						7	5	4	5	5	101.07	97.996	2;3	8.1707E-138	91140	160511_QHF_FH_JSI10i_2	332.99	294.19			1.1179	1.1297	29.361	19	2	Median	1.3522	1.1187	42.79	5	2	Median	0.956	1.1369	11.504	4	0	Median	1.0073	0.96403	19.136	5	0	Median	1.1458	1.2325	32.313	5	0	Median	14468000000	7058000000	7409800000	1960500000	901940000	1058600000	2536000000	1373700000	1162300000	4549100000	2246100000	2303000000	5422100000	2536300000	2885900000	39182	1322	36863	240189;240190;240191;240192;240193;240194;240195;240196;240197;240198;240199;240200;240201;240202;240203;240204;240205;240206;240207	322172;322173;322174;322175;322176;322177;322178;322179;322180;322181;322182;322183;322184;322185;322186;322187;322188;322189;322190;322191;322192;322193;322194;322195;322196;322197;322198;322199;322200;322201;322202;322203;322204;322205;322206	322194			35	
NMAEQIIQEIYSQIQSK	1	Oxidation (M)	2038.0041	0.004105685	1322	P29401	TKT	Transketolase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	101.81	101.72	3	4.2651E-08	88494	160511_QHF_FH_JSI12i_3	128.59	115.55			0.94611	1.0983	31.815	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97252	1.1658	NaN	1	0	Median	0.59783	0.60111	NaN	1	0	Median	1.0292	1.1031	9.0395	2	0	Median	638170000	315200000	322970000	0	0	0	153040000	71274000	81767000	117190000	72129000	45066000	367930000	171790000	196140000	39183	1322	36863	240208;240209;240210;240211	322207;322208;322209;322210;322211	322210		970	3	
NMAILDPPDADHLYSAK	1	Unmodified	1869.8931	0.89309867	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	70.011	69.063	3	2.9896E-05	59325	160511_QHF_FH_JSI12i_2	75.376	71.255			1.1881	1.2529	19.751	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4269	1.4406	NaN	1	0	Median	0.98919	1.0896	NaN	1	0	Median	176970000	64112000	112860000	0	0	0	0	0	0	113680000	38935000	74740000	63297000	25176000	38121000	39184	3438	36864	240212;240213;240214	322212;322213;322214;322215;322216;322217	322212			6	
NMALSIAER	0	Unmodified	1003.5121	0.51206481	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.669	41.702	2	0.002638	35771	160511_QHF_FH_JSI12i_2	63.816	38.997			1.0155	1.0125	18.448	4	0	Linear	1.7957	1.5413	NaN	1	0	Median	1.0017	1.2098	NaN	1	0	Median	1.0295	1.0281	NaN	1	0	Median	0.96627	1.0591	NaN	1	0	Median	652330000	326710000	325620000	108430000	49338000	59092000	157520000	83102000	74422000	202920000	93857000	109060000	183460000	100410000	83048000	39185	3503	36865	240215;240216;240217;240218	322218;322219;322220	322218			3	
NMAQFSVLLPR	0	Unmodified	1274.6805	0.68052712	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	2	1	4	2	83.695	83.002	2;3	7.0711E-07	73079	160511_QHF_FH_JSI11i_2	119.75	107.9			1.0477	1.2313	54.651	6	4	Median	1.3148	1.1377	96.343	2	2	Median	1.0767	1.3217	NaN	1	0	Median	1.3793	1.4074	71.333	2	2	Median	1.0196	1.147	NaN	1	0	Median	856900000	377450000	479440000	210700000	96189000	114510000	135090000	67790000	67296000	380660000	164370000	216290000	130450000	49100000	81354000	39186	2354	36866	240219;240220;240221;240222;240223;240224;240225;240226;240227	322221;322222;322223;322224;322225;322226;322227;322228;322229;322230;322231	322226			11	
NMAQVTK	1	Unmodified	790.40072	0.40072345	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1.25	0.433	3	1								1	2	1		10.461	10.097	2	0.022766	7719	160511_QHF_FH_JSI9i_1	55.902	45.085			0.93875	0.87152	108.15	4	1	Median	0.62227	0.51928	NaN	1	0	Median	1.2513	1.4964	163.72	2	1	Median	1.4162	1.4627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	420830000	234680000	186150000	86503000	49861000	36642000	299390000	173090000	126300000	34939000	11730000	23209000	0	0	0	39187	4873	36867	240228;240229;240230;240231	322232;322233;322234	322234			3	
NMDAIIVDSEK	1	Unmodified	1233.5911	0.59110299	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		51.889	51.156	2	0.0012433	44168	160511_QHF_FH_JSI11i_2	69.721	57.873			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39188	2560	36868	240232;240233	322235;322236	322235			2	
NMDDDRLSR	0	Unmodified	1120.4931	0.49312028	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	2	3	11.332	11	2;3	2.618E-05	8877	160511_QHF_FH_JSI10i_2	121.5	99.117			0.99789	1.0082	50.064	8	5	Median	1.4688	1.2355	55.907	2	2	Median	0.80909	1.0033	NaN	1	0	Median	0.65993	0.66289	59.984	2	2	Median	0.67959	0.75551	52.963	3	1	Plateau	685840000	347840000	338000000	165150000	62960000	102190000	111200000	59662000	51535000	234310000	134650000	99656000	175180000	90568000	84616000	39189	2502	36869	240234;240235;240236;240237;240238;240239;240240;240241	322237;322238;322239;322240;322241;322242;322243;322244	322242			8	
NMDPLNDNIATLLHQSSDK	1	Unmodified	2125.011	0.010981977	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.464		11	5							4	6	4	2	84.701	84.054	2;3	5.5181E-33	74910	160511_QHF_FH_JSI10i_2	168.27	159.45			0.94006	1.0216	25.395	13	6	Median	0.957	0.8252	23.224	4	3	Median	0.84144	1.0251	25.636	3	1	Median	1.0409	1.0263	23.974	4	1	Median	1.167	1.2264	29.205	2	1	Median	2180100000	1154400000	1025600000	441940000	197780000	244160000	680040000	429020000	251020000	1011200000	504640000	506580000	46844000	22986000	23859000	39190	1436	36870	240242;240243;240244;240245;240246;240247;240248;240249;240250;240251;240252;240253;240254;240255;240256;240257	322245;322246;322247;322248;322249;322250;322251;322252;322253;322254;322255;322256;322257;322258;322259;322260;322261;322262;322263;322264;322265;322266;322267;322268	322263			23	
NMDPLNDNIATLLHQSSDK	1	Oxidation (M)	2141.0059	0.005896599	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.548	74.693	3	3.8441E-08	66422	160511_QHF_FH_JSI10i_2	104.03	96.072			0.9975	1.0495	15.421	4	0	Median	1.334	1.1576	NaN	1	0	Median	0.71762	0.88465	NaN	1	0	Median	0.92717	0.95161	NaN	1	0	Median	1.0732	1.2215	NaN	1	0	Median	251930000	116450000	135480000	58222000	22587000	35635000	61674000	28856000	32818000	96997000	47250000	49747000	35037000	17760000	17277000	39191	1436	36870	240258;240259;240260;240261	322269;322270;322271;322272;322273;322274;322275;322276;322277	322277		1105	9	
NMDSMPELQK	1	Unmodified	1191.5264	0.52639425	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.808	41.18	2	0.00089476	37446	160511_QHF_FH_JSI12i_1	81.95	66.335			0.6561	0.67894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6561	0.67894	NaN	1	1	Median	95349000	55140000	40209000	0	0	0	0	0	0	0	0	0	95349000	55140000	40209000	39192	3904	36871	240262	322278	322278			1	
NMDTSAVLAEIPAGPGREPVQTLYSQSPALELDK	1	Unmodified	3596.8032	0.80322762	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			100.78	100.7	3;4	4.1734E-40	88497	160511_QHF_FH_JSI9i_2	138.7	133.69			0.12979	0.16152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.12979	0.16152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62582000	41552000	21030000	32645000	15866000	16779000	29937000	25686000	4251100	0	0	0	0	0	0	39193	5316	36872	240263;240264	322279;322280;322281	322280			3	
NMEPEQPSTSK	1	Unmodified	1246.55	0.54996646	4925	Q9NQS1	AVEN	Cell death regulator Aven	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	15.018	14.294	2	0.00028024	11567	160511_QHF_FH_JSI9i_1	77.379	45.445			1.0854	0.97863	6.0254	2	1	Median	1.1455	0.93781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0285	1.0212	NaN	1	1	Median	54334000	26439000	27895000	38494000	19368000	19126000	0	0	0	0	0	0	15840000	7071600	8768700	39194	4925	36873	240265;240266	322282;322283	322283			2	
NMEVMGFLHGIFER	0	Unmodified	1678.796	0.79596759	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.198	85.477	3	0.00074907	48731	160513_QHF_FH_JSI10Kac_6	70.784	68.718			0.080349	0.091678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.080349	0.091678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83893000	79709000	4183800	0	0	0	83893000	79709000	4183800	0	0	0	0	0	0	39195	5323	36874	240267	322284	322284			1	
NMFAIWR	0	Unmodified	936.46399	0.46399241	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.87		7	1						6	3	4	3	4	75.819	71.564	2	0.015454	37866	160513_QHF_FH_JSI11Kac_6	74.717	69.862			0.98574	0.98741	55.511	13	11	Median	1.1556	0.98741	57.026	3	2	Median	0.98574	1.1455	60.151	3	3	Median	1.419	1.3879	61.047	3	2	Median	0.64912	0.7113	67.028	4	4	Median	436650000	208460000	228190000	58627000	29969000	28659000	215360000	105400000	109960000	105700000	43788000	61908000	56964000	29303000	27661000	39196	5088	36875	240268;240269;240270;240271;240272;240273;240274;240275;240276;240277;240278;240279;240280;240281	322285;322286;322287;322288;322289;322290;322291;322292;322293;322294;322295;322296;322297;322298;322299;322300	322288			16	
NMFEKIHQETFGK	2	Acetyl (K)	1649.7872	0.78717704	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.092	64.736	3	0.0028887	35165	160513_QHF_FH_JSI11Kac_6	62.68	51.41			0.083825	0.081323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.083825	0.081323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45573000	41390000	4182200	0	0	0	0	0	0	45573000	41390000	4182200	0	0	0	39197	2665	36876	240282	322301	322301	2620		1	
NMFLQAVK	1	Unmodified	949.50552	0.50552287	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	52.843	51.962	2	0.0022254	45946	160511_QHF_FH_JSI10i_2	79.597	51.085			2.6615	3.0587	88.061	5	5	Median	3.594	3.0587	NaN	1	1	Median	2.6615	3.3527	NaN	1	1	Median	1.26	1.2763	140.17	2	2	Median	0.98389	1.1112	NaN	1	1	Median	682650000	286510000	396140000	82571000	25517000	57055000	96095000	32785000	63310000	351870000	143130000	208740000	152120000	85086000	67034000	39198	432	36877	240283;240284;240285;240286;240287;240288;240289	322302;322303;322304;322305;322306;322307;322308	322308			7	
NMFLVGEGDSVITQVLNK	1	Unmodified	1963.0085	0.0084627814	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.71	101.58	2	5.6516E-11	89338	160511_QHF_FH_JSI11i_2	159.02	136.98			1.5481	1.5414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5481	1.5414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87947000	43613000	44334000	0	0	0	0	0	0	87947000	43613000	44334000	0	0	0	39199	532	36878	240290	322309	322309			1	
NMFTNQDR	0	Unmodified	1024.4396	0.43962815	676	O95302;Q75LS8	FKBP9;FKBP9P1	Peptidyl-prolyl cis-trans isomerase FKBP9;Putative FK506-binding protein 9-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	17.869	17.14	2	0.0028117	13939	160511_QHF_FH_JSI11i_2	84.568	74.98			0.86685	0.98918	43.485	4	4	Median	1.8077	1.5391	NaN	1	1	Median	0.59463	0.7382	NaN	1	1	Median	0.63883	0.63209	NaN	1	1	Median	1.1763	1.3255	NaN	1	1	Median	235790000	106110000	129680000	76483000	24541000	51942000	40272000	28067000	12205000	54500000	30645000	23855000	64532000	22859000	41674000	39200	676	36879	240291;240292;240293;240294	322310;322311;322312;322313	322312			4	
NMGAHAVVLELLQIPYEK	1	Unmodified	2024.0765	0.076482767	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				91.142	82.363	3	0.034388	46098	160513_QHF_FH_JSI9Kac_6	37.999	16.541			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39201	2549	36880	240295	322314	322314			1	
NMGGPYGGGNYGPGGSGGSGGYGGR	0	Oxidation (M)	2204.893	0.89299211	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.31	3	9	2					1		1	5	4	5	32.396	30.975	2;3	8.2559E-63	26750	160511_QHF_FH_JSI10i_1	221.47	211.42			1.043	1.1458	26.03	13	1	Median	2.0206	1.6855	NaN	1	0	Median	1.1049	1.2915	5.183	3	0	Plateau	1.1033	1.0826	9.2854	4	1	Median	0.88696	1.5331	38.18	5	0	Linear	445940000	208450000	237490000	63022000	21070000	41952000	104170000	48684000	55483000	111210000	50352000	60859000	167540000	88342000	79201000	39202	1212	36881	240296;240297;240298;240299;240300;240301;240302;240303;240304;240305;240306;240307;240308;240309;240310	322315;322316;322317;322318;322319;322320;322321;322322;322323;322324;322325;322326;322327;322328;322329;322330;322331;322332;322333;322334;322335	322325		845	21	
NMGGPYGGGNYGPGGSGGSGGYGGR	0	Unmodified	2188.8981	0.89807748	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.96	4.97	8	9	7						4	4	7	10	7	39.973	37.927	2;3	9.1043E-243	33601	160511_QHF_FH_JSI11i_3	346.18	337.81			1.0585	1.0643	32.709	27	5	Median	1.022	0.9527	26.077	4	1	Linear	1.0684	1.2388	32.325	7	1	Median	1.0273	1.0643	21.023	9	2	Median	0.85976	0.94125	46.619	7	1	Median	8325300000	4093500000	4231900000	1356400000	499840000	856530000	2214900000	1251800000	963060000	2777800000	1326900000	1450900000	1976200000	1014900000	961360000	39203	1212	36881	240311;240312;240313;240314;240315;240316;240317;240318;240319;240320;240321;240322;240323;240324;240325;240326;240327;240328;240329;240330;240331;240332;240333;240334;240335;240336;240337;240338	322336;322337;322338;322339;322340;322341;322342;322343;322344;322345;322346;322347;322348;322349;322350;322351;322352;322353;322354;322355;322356;322357;322358;322359;322360;322361;322362;322363;322364;322365;322366;322367;322368;322369;322370;322371;322372;322373;322374;322375;322376;322377;322378;322379;322380;322381;322382;322383;322384;322385;322386	322338			51	
NMGLYGER	0	Unmodified	938.428	0.42800083	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	25.643	24.863	2	0.0011981	20741	160511_QHF_FH_JSI11i_2	110.03	89.744			0.64754	0.7912	86.319	5	4	Median	0.35083	0.30182	NaN	1	1	Median	0.64754	0.79499	NaN	1	0	Median	1.4228	1.475	88.085	2	2	Median	0.34099	0.37944	NaN	1	1	Median	2538900000	1285300000	1253700000	348780000	181990000	166790000	475400000	259250000	216150000	1301000000	592290000	708750000	413690000	251710000	161980000	39204	773	36882	240339;240340;240341;240342;240343	322387;322388;322389;322390;322391;322392	322390			6	
NMGLYGER	0	Oxidation (M)	954.42292	0.42291545	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By matching	2	0		2									1		1	25.852	24.771	2	0.023938	21459	160511_QHF_FH_JSI10i_2	50.04	27.909			4.0406	4.7009	40.763	2	0	Median	NaN	NaN	NaN	0	0	Median	5.1398	6.2713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.1765	3.5237	NaN	1	0	Median	146720000	41187000	105530000	0	0	0	72654000	18788000	53866000	0	0	0	74065000	22400000	51665000	39205	773	36882	240344;240345	322393	322393			1	
NMGYVQQR	0	Unmodified	994.46545	0.46544897	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.13		8						4		2	3	4	3	18.218	14.68	2	0.0015095	12302	160511_QHF_FH_JSI11i_2	103.02	72.349			0.90586	1.1111	186.34	11	11	Median	2.8462	2.4223	261.51	2	2	Median	0.90586	1.1111	253.75	3	3	Median	0.97205	0.9236	133.69	4	4	Median	2.4101	2.6838	277.34	2	2	Median	902320000	400320000	501990000	165960000	72380000	93582000	213290000	96775000	116520000	236180000	100120000	136060000	286880000	131050000	155830000	39206	359	36883	240346;240347;240348;240349;240350;240351;240352;240353;240354;240355;240356;240357	322394;322395;322396;322397;322398;322399;322400;322401;322402;322403;322404;322405	322398			12	
NMIIDRENQCVIISGESGAGK	1	Unmodified	2290.1046	0.10456479	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		54.771	54.771	3	0.00035667	48547	160511_QHF_FH_JSI11i_3	53.909	45.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39207	2332	36884	240358	322406	322406			1	
NMINIISR	0	Unmodified	959.52224	0.52223557	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1	2	2	3	2	53.797	51.57	2	0.0026488	44163	160511_QHF_FH_JSI12i_3	83.265	47.385			0.68661	0.74398	61.886	6	3	Median	1.0516	0.89367	114.11	2	2	Median	0.45473	0.55454	61.01	2	1	Median	0.69125	0.69611	NaN	1	0	Median	0.70514	0.79515	NaN	1	0	Median	1435100000	735740000	699320000	495960000	234130000	261830000	313750000	177330000	136420000	366680000	195930000	170750000	258660000	128350000	130310000	39208	1818	36885	240359;240360;240361;240362;240363;240364;240365;240366;240367	322407;322408;322409;322410;322411;322412;322413;322414;322415;322416	322415			10	
NMITGTSQADCAVLIVAAGVGEFEAGISK	1	Unmodified	2908.431	0.43104388	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0		By MS/MS	By MS/MS		4.5	3.77		2	1	1							2	2		101.76	99.395	3	1.7742E-23	90450	160511_QHF_FH_JSI11i_2	126.36	120.2			1.1255	1.2347	36.338	4	1	Median	NaN	NaN	NaN	0	0	Median	1.3853	1.6841	28.798	2	1	Median	0.99657	0.98684	16.593	2	0	Median	NaN	NaN	NaN	0	0	Median	246270000	116320000	129950000	0	0	0	87588000	35270000	52317000	158680000	81053000	77630000	0	0	0	39209	2072;2231	36886	240368;240369;240370;240371	322417;322418;322419;322420	322418			4	
NMITQYWPDRETAPGDISPYTIPEEDR	0	Unmodified	3193.4662	0.46624341	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	88.139	87.926	3	5.928E-34	76307	160511_QHF_FH_JSI12i_3	148.87	141.84			0.93405	0.83228	18.846	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.70131	0.83228	NaN	1	1	Median	0.73239	0.68744	NaN	1	1	Median	0.97062	1.0021	NaN	1	1	Median	65294000	49364000	15930000	0	0	0	17922000	13418000	4503700	21984000	16224000	5759700	25389000	19722000	5666600	39210	686	36887	240372;240373;240374	322421;322422;322423;322424	322424			4	
NMLFSGTNIAAGK	1	Unmodified	1322.6653	0.66527099	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.65	6.54	1	5	6					6	5	7	6	4	6	64.494	59.419	2	3.9113E-23	50912	160511_QHF_FH_JSI12i_2	182.64	154.24			0.94674	0.87221	69.479	21	18	Median	0.94674	0.81256	39.551	7	6	Median	0.96988	1.1619	77.998	6	5	Median	0.86684	0.85189	70.138	4	4	Median	0.8466	0.93957	105.61	4	3	Median	3958100000	2608200000	1349900000	1159700000	771640000	388100000	760010000	456630000	303380000	1344100000	1005300000	338830000	694270000	374650000	319620000	39211	1103	36888	240375;240376;240377;240378;240379;240380;240381;240382;240383;240384;240385;240386;240387;240388;240389;240390;240391;240392;240393;240394;240395;240396;240397	322425;322426;322427;322428;322429;322430;322431;322432;322433;322434;322435;322436;322437;322438;322439;322440;322441;322442;322443;322444;322445;322446;322447;322448;322449	322427			25	
NMLFSGTNIAAGK	1	Oxidation (M)	1338.6602	0.66018561	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1			1	2	1	51.676	48.237	2	0.00069421	42647	160511_QHF_FH_JSI10i_2	106.62	77.145			1.257	1.2444	33.019	4	3	Median	NaN	NaN	NaN	0	0	Median	0.74102	0.88736	NaN	1	1	Median	1.257	1.2444	25.104	2	1	Median	1.6798	1.8338	NaN	1	1	Median	110930000	43476000	67452000	0	0	0	26437000	12987000	13450000	57326000	20141000	37185000	27166000	10349000	16817000	39212	1103	36888	240398;240399;240400;240401	322450;322451;322452;322453	322453		744	4	
NMLQFNLQILPK	1	Unmodified	1457.8065	0.80645592	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	100.46	100.32	2	1.4875E-05	86752	160511_QHF_FH_JSI12i_3	93.649	78.077			0.42784	0.50048	72.164	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24351	0.30045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75171	0.83367	NaN	1	0	Median	383950000	277010000	106940000	0	0	0	208030000	170840000	37190000	0	0	0	175920000	106170000	69750000	39213	282	36889	240402;240403;240404	322454;322455;322456;322457	322457			4	
NMLSQVNYR	0	Unmodified	1123.5444	0.54442757	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	39.45	38.084	2	0.01374	32318	160511_QHF_FH_JSI12i_2	53.968	45.105			0.75409	0.80064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75409	0.80064	NaN	1	1	Median	26575000	14461000	12114000	0	0	0	0	0	0	0	0	0	26575000	14461000	12114000	39214	1152	36890	240405;240406	322458;322459	322459			2	
NMLTEELYGNTFQLYK	1	Unmodified	1962.9397	0.93971451	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	95.891	95.452	2	8.2678E-07	83741	160511_QHF_FH_JSI11i_2	122.45	100.82			0.71673	0.74981	8.7569	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72939	0.70479	NaN	1	1	Median	0.70428	0.7977	NaN	1	1	Median	24106000	15930000	8175400	0	0	0	0	0	0	14513000	9985200	4527400	9593200	5945200	3648000	39215	2666	36891	240407;240408	322460;322461;322462	322462			3	
NMLTSSGASFTYVK	1	Unmodified	1504.7232	0.7231798	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	61.076	60.277	2	0.00021698	52426	160511_QHF_FH_JSI11i_2	106.49	96.805			0.89762	1.034	28.092	4	4	Median	NaN	NaN	NaN	0	0	Median	0.78911	0.96531	NaN	1	1	Median	0.9132	0.93333	46.562	2	2	Median	1.021	1.1076	NaN	1	1	Median	125990000	67649000	58339000	0	0	0	32051000	19676000	12376000	69103000	38330000	30773000	24833000	9642500	15190000	39216	3009	36892	240409;240410;240411;240412	322463;322464;322465;322466	322465			4	
NMMAACDPR	0	Unmodified	1064.4202	0.42015503	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.09	4	4	6				3	1		4	5	6	3	22.139	19.986	2	3.6579E-05	17263	160511_QHF_FH_JSI10i_2	99.442	95.085			1.2068	1.2738	45.729	16	5	Median	1.816	1.4861	38.555	3	0	Plateau	1.1081	1.2776	64.164	5	3	Median	0.97145	0.93271	49.956	5	2	Median	1.2675	1.4032	9.6004	3	0	Median	6217900000	3095300000	3122600000	702380000	309660000	392720000	1416500000	718290000	698250000	2370100000	1279000000	1091100000	1728900000	788440000	940450000	39217	872;2075;2477;2824;811;4440;2430	36893	240413;240414;240415;240416;240417;240418;240419;240420;240421;240422;240423;240424;240425;240426;240427;240428;240429;240430	322467;322468;322469;322470;322471;322472;322473;322474;322475;322476;322477;322478;322479;322480;322481;322482;322483;322484;322485;322486;322487;322488;322489;322490;322491;322492	322492			26	
NMMAACDPR	0	Oxidation (M)	1080.4151	0.41506966	2075;872;2477;811;4440;2430;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350;Q9BUF5;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.59	4.84	9	5					3			1	5	7	4	15.945	14.076	2	0.00021139	6970	160513_QHF_FH_JSI11Kac_4	95.358	91.966			0.91249	0.98701	67.093	15	6	Median	NaN	NaN	NaN	0	0	Median	0.88445	1.0557	43.284	5	2	Median	0.73023	0.69365	40.209	6	4	Median	1.5739	1.6405	117.08	4	0	Median	1479700000	794990000	684740000	0	0	0	515580000	306820000	208760000	422610000	231190000	191420000	541540000	256990000	284560000	39218	872;2075;2477;2824;811;4440;2430	36893	240431;240432;240433;240434;240435;240436;240437;240438;240439;240440;240441;240442;240443;240444;240445;240446;240447	322493;322494;322495;322496;322497;322498;322499;322500;322501;322502;322503;322504;322505;322506;322507;322508;322509;322510;322511;322512	322508		329;330	20	
NMMGTMIQK	1	Unmodified	1052.4817	0.48169266	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	39.635	38.509	2	0.0032261	33847	160511_QHF_FH_JSI10i_2	71.379	50.079			0.56481	0.66763	16.589	3	3	Plateau	0.64059	0.54714	NaN	1	1	Median	0.54333	0.66763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69578	0.76059	NaN	1	1	Median	114880000	64877000	50000000	37723000	22473000	15250000	39881000	25573000	14308000	0	0	0	37273000	16832000	20442000	39219	2157	36894	240448;240449;240450	322513;322514;322515	322515			3	
NMMNHSQVGQGIGIPSR	0	Unmodified	1824.8723	0.87232043	5165	Q9NZN8	CNOT2	CCR4-NOT transcription complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.38	0.484		5	3							3	3	2		45.204	44.091	3	0.00013897	36771	160511_QHF_FH_JSI10i_3	57.499	39.922			0.92792	1.1264	53.174	5	4	Median	1.1546	0.9965	82.657	2	2	Median	0.92792	1.1264	43.95	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154920000	70685000	84235000	48846000	27622000	21224000	95640000	43063000	52578000	10434000	0	10434000	0	0	0	39220	5165	36895	240451;240452;240453;240454;240455;240456;240457;240458	322516;322517;322518;322519;322520;322521;322522;322523;322524	322517			9	
NMNLPEIPR	0	Unmodified	1082.5543	0.55426398	3846	Q92572	AP3S1	AP-3 complex subunit sigma-1	yes	yes	0	0	0	0		By matching	By MS/MS		1.33	0.471	2	1									1	2		57.403	56.965	2	0.030725	51656	160511_QHF_FH_JSI11i_1	40.021	32.541			1.4955	1.4358	8.4993	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1532	1.3512	NaN	1	0	Median	1.5401	1.5148	7.5749	2	0	Median	NaN	NaN	NaN	0	0	Median	156090000	63540000	92550000	0	0	0	37964000	12377000	25586000	118130000	51163000	66963000	0	0	0	39221	3846	36896	240459;240460;240461	322525	322525			1	
NMPGLSAATLASLGGTSSR	0	Unmodified	1789.8992	0.89924668	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	80.701	79.911	2	2.4354E-10	69070	160511_QHF_FH_JSI12i_2	127.71	103.37			0.90635	1.039	11.138	4	1	Median	1.2819	1.0651	NaN	1	0	Median	0.8618	1.0606	NaN	1	0	Median	0.85363	0.84162	NaN	1	0	Median	0.9532	1.0179	NaN	1	1	Median	168770000	84760000	84010000	34789000	15044000	19746000	46143000	21443000	24700000	47129000	25753000	21376000	40709000	22520000	18189000	39222	2804	36897	240462;240463;240464;240465;240466	322526;322527;322528;322529;322530;322531;322532	322527			7	
NMPLQHLLEQIK	1	Unmodified	1462.7966	0.79661951	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	5	2	3	84.341	83.655	3	1.0906E-06	74275	160511_QHF_FH_JSI10i_2	100.38	89.271			0.88565	0.99542	31.364	8	3	Median	0.76825	0.65566	4.6189	2	1	Median	0.63337	0.76072	37.011	2	1	Median	1.2045	1.1714	0.56929	2	0	Median	1.0767	1.1468	19	2	1	Median	615150000	291270000	323880000	120080000	66664000	53418000	69320000	31981000	37339000	217570000	90542000	127030000	208180000	102080000	106100000	39223	1085	36898	240467;240468;240469;240470;240471;240472;240473;240474;240475;240476;240477;240478	322533;322534;322535;322536;322537;322538;322539;322540;322541;322542;322543;322544;322545;322546;322547;322548;322549	322546			17	
NMPSNEK	1	Unmodified	818.35925	0.35925256	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.0846	5.8466	2	0.009972	3854	160511_QHF_FH_JSI10i_1	67.032	51.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39224	1648	36899	240479	322550	322550			1	
NMPSNEKPK	2	Acetyl (K);Oxidation (M)	1101.5125	0.51245874	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		11.017	3.6938	2	0.059044	4551	160513_QHF_FH_JSI11Kac_3	47.187	38.967			0.029855	0.029687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.029855	0.029687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6440700	6303200	137520	0	0	0	0	0	0	6440700	6303200	137520	0	0	0	39225	1648	36900	240480	322551	322551			1	
NMPVQLPLAHSGWLFK	1	Unmodified	1836.9709	0.97089548	839	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		99.078	99.078	3	0.00018338	88133	160511_QHF_FH_JSI11i_3	66.673	59.616			0.90756	0.85707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90756	0.85707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17233000	10144000	7089300	0	0	0	0	0	0	17233000	10144000	7089300	0	0	0	39226	839	36901	240481;240482	322552;322553	322553			2	
NMQITILTCR	0	Oxidation (M)	1264.6268	0.62677699	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			55.368	44.82	2	0.036407	22768	160513_QHF_FH_JSI10Kac_5	54.608	45.394			0.76896	0.90669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76896	0.90669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4294500	2417700	1876700	0	0	0	4294500	2417700	1876700	0	0	0	0	0	0	39227	696	36902	240483	322554	322554			1	
NMQLTAGSK	1	Unmodified	948.46987	0.46986564	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	17.309	17.035	2	0.0019464	13601	160511_QHF_FH_JSI11i_2	68.371	50.985			0.5132	0.5134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5132	0.5134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52920000	35176000	17744000	0	0	0	0	0	0	52920000	35176000	17744000	0	0	0	39228	585	36903	240484;240485;240486	322555;322556;322557	322557			3	
NMQNVEHVPLSLDR	0	Unmodified	1650.8148	0.81478877	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.32	0.465		13	6							2	3	6	8	53.817	53.009	2;3	1.8983E-11	45817	160511_QHF_FH_JSI11i_2	193.81	179.12			2.12	2.305	110.86	14	14	Median	4.2283	3.621	34.199	2	2	Median	1.9605	2.4457	120.89	3	3	Median	0.83925	0.85078	121.23	4	4	Median	2.0969	2.1649	122.79	5	5	Median	7464000000	3814200000	3649900000	671330000	249770000	421560000	2008100000	1129400000	878650000	3000500000	1616700000	1383900000	1784100000	818310000	965770000	39229	1177	36904	240487;240488;240489;240490;240491;240492;240493;240494;240495;240496;240497;240498;240499;240500;240501;240502;240503;240504;240505	322558;322559;322560;322561;322562;322563;322564;322565;322566;322567;322568;322569;322570;322571;322572;322573;322574;322575;322576;322577;322578	322568			21	
NMQNVEHVPLSLDR	0	Oxidation (M)	1666.8097	0.80970339	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	1	0		By MS/MS		By matching	2.33	0.471		2	1								1		2	42.971	42.114	3	0.016923	37050	160511_QHF_FH_JSI10i_2	35.35	26.965			1.1195	1.2526	17.371	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0267	1.2577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3586	1.4574	21.418	2	0	Median	161990000	87182000	74805000	0	0	0	66045000	37375000	28671000	0	0	0	95942000	49807000	46135000	39230	1177	36904	240506;240507;240508	322579	322579		803	1	
NMSDEEK	1	Unmodified	851.3331	0.33309739	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.234	4.8923	2	0.014965	2897	160511_QHF_FH_JSI12i_1	64.757	46.909			0.61196	0.63358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61196	0.63358	NaN	1	1	Median	89426000	59281000	30145000	0	0	0	0	0	0	0	0	0	89426000	59281000	30145000	39231	4293	36905	240509	322580	322580			1	
NMSDEEKQK	2	Acetyl (K);Oxidation (M)	1165.4921	0.49211723	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	5.7952	-1.4444	2	0.0020821	1993	160513_QHF_FH_JSI12Kac_3	76.064	63.027			0.89175	0.94256	15.75	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79248	0.94212	26.248	2	0	Median	1.0772	1.0313	2.5842	2	0	Median	0.77964	0.82913	7.9892	2	0	Median	30801000	16537000	14264000	0	0	0	9642500	5132300	4510200	5446000	2613800	2832200	15712000	8790800	6921300	39232	4293	36906	240510;240511;240512;240513;240514;240515	322581;322582;322583;322584;322585	322583	3109	2431	5	
NMSDEEKQK	2	Acetyl (K)	1149.4972	0.49720261	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		12.55	5.2115	2	0.057606	5253	160513_QHF_FH_JSI11Kac_3	49.715	38.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2579700	2579700	0	0	0	0	0	0	0	2579700	2579700	0	0	0	0	39233	4293	36906	240516	322586	322586	3109		1	
NMSGSLYEMVSR	0	Unmodified	1372.6115	0.61152086	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		6							2	2	1	3	2	62.43	60.405	2	7.2982E-05	53404	160511_QHF_FH_JSI10i_2	94.767	89.784			0.73942	0.77515	83.718	6	5	Median	0.67271	0.57382	NaN	1	1	Median	0.81275	0.99364	NaN	1	0	Median	0.98986	1.0096	114.16	2	2	Median	1.3134	1.4777	126.37	2	2	Median	1122800000	567380000	555450000	115950000	56509000	59440000	191780000	88525000	103250000	552770000	291870000	260900000	262340000	130470000	131860000	39234	2277	36907	240517;240518;240519;240520;240521;240522;240523;240524	322587;322588;322589;322590;322591;322592;322593;322594;322595	322593			9	
NMSIIDAFK	1	Unmodified	1037.5216	0.52156686	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.455	74.194	2	0.013404	64041	160511_QHF_FH_JSI12i_2	56.432	39.046			0.054571	0.061536	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.054571	0.061536	NaN	1	1	Median	29624000	27564000	2060700	0	0	0	0	0	0	0	0	0	29624000	27564000	2060700	39235	1695	36908	240525	322596;322597	322596			2	
NMSQEQVAQK	1	Unmodified	1161.5448	0.5448215	2896	Q5JPH6	EARS2	Probable glutamate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			11.092	10.58	2	0.0026328	8368	160511_QHF_FH_JSI10i_1	61.56	49.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39236	2896	36909	240526;240527	322598;322599	322598			2	
NMSSAGADGRK	1	Unmodified	1092.4982	0.49820566	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		5.0882	4.7876	2	0.012199	2582	160511_QHF_FH_JSI11i_2	61.78	45.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35006000	16017000	18989000	0	0	0	16017000	16017000	0	18989000	0	18989000	0	0	0	39237	4330	36910	240528;240529	322600;322601	322600			2	
NMSSMAYSLYLFTR	0	Unmodified	1682.7796	0.77964882	5255	Q9UBT7	CTNNAL1	Alpha-catulin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		90.332	82.792	2	0.00034927	47634	160513_QHF_FH_JSI10Kac_6	130.1	120.44			0.71869	0.76233	34.516	2	2	Median	NaN	NaN	NaN	0	0	Median	0.83119	0.97306	NaN	1	1	Median	0.62142	0.59724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134430000	83374000	51059000	0	0	0	87743000	54737000	33005000	46691000	28637000	18054000	0	0	0	39238	5255	36911	240530;240531	322602;322603	322603			2	
NMSVHLSPCFR	0	Unmodified	1346.6224	0.62236032	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.96		9	8						6	2	9	6	6	50.265	47.557	2;3	2.1046E-06	40515	160511_QHF_FH_JSI12i_3	121.6	101.27			1.0276	1.2069	89.851	22	9	Median	1.2226	1.048	24.42	2	0	Median	1.2575	1.419	32.029	8	4	Median	0.81726	0.80373	29.946	6	2	Median	1.2495	1.2955	156.79	6	3	Median	5267200000	1658400000	3608800000	200330000	105930000	94399000	814760000	367280000	447480000	1389900000	653330000	736600000	2862200000	531830000	2330400000	39239	1996	36912	240532;240533;240534;240535;240536;240537;240538;240539;240540;240541;240542;240543;240544;240545;240546;240547;240548;240549;240550;240551;240552;240553;240554	322604;322605;322606;322607;322608;322609;322610;322611;322612;322613;322614;322615;322616;322617;322618;322619;322620;322621;322622;322623;322624;322625;322626;322627;322628;322629	322625			25	
NMSVIAHVDHGK	1	Unmodified	1306.6452	0.64520425	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.26	5.59		40	23						17	19	17	21	23	30.935	28.342	2;3;4	1.2159E-09	21003	160511_QHF_FH_JSI12i_3	117.86	85.019			0.23475	0.22803	297.35	71	60	Median	0.21651	0.18324	321.79	18	15	Median	1.9095	2.3194	291.29	15	13	Median	0.1413	0.14045	309.21	20	17	Median	0.36668	0.39029	278.5	18	15	Median	23949000000	10969000000	12981000000	3432800000	1533000000	1899800000	3572200000	1840600000	1731600000	9048600000	4306700000	4741900000	7895800000	3288400000	4607400000	39240	1033	36913	240555;240556;240557;240558;240559;240560;240561;240562;240563;240564;240565;240566;240567;240568;240569;240570;240571;240572;240573;240574;240575;240576;240577;240578;240579;240580;240581;240582;240583;240584;240585;240586;240587;240588;240589;240590;240591;240592;240593;240594;240595;240596;240597;240598;240599;240600;240601;240602;240603;240604;240605;240606;240607;240608;240609;240610;240611;240612;240613;240614;240615;240616;240617;240618;240619;240620;240621;240622;240623;240624;240625;240626;240627;240628;240629;240630;240631;240632;240633;240634	322630;322631;322632;322633;322634;322635;322636;322637;322638;322639;322640;322641;322642;322643;322644;322645;322646;322647;322648;322649;322650;322651;322652;322653;322654;322655;322656;322657;322658;322659;322660;322661;322662;322663;322664;322665;322666;322667;322668;322669;322670;322671;322672;322673;322674;322675;322676;322677;322678;322679;322680;322681;322682;322683;322684;322685;322686;322687;322688;322689;322690;322691;322692;322693;322694;322695;322696;322697;322698;322699;322700;322701;322702;322703;322704;322705;322706;322707;322708;322709;322710;322711;322712;322713;322714;322715;322716;322717;322718;322719;322720;322721;322722;322723;322724;322725;322726;322727;322728;322729;322730	322718			100	
NMSVIAHVDHGK	1	Oxidation (M)	1322.6401	0.64011887	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.39	0.487		11	7								3	7	8	20.605	20.08	2;3	0.00024715	10817	160511_QHF_FH_JSI11i_2	77.912	69.167			0.21087	0.2139	214.36	12	12	Median	NaN	NaN	NaN	0	0	Median	0.16835	0.20844	93.127	2	2	Median	0.078049	0.076424	46.561	4	4	Median	3.504	3.9937	204.74	6	6	Median	1935100000	993760000	941330000	0	0	0	215210000	179030000	36178000	464620000	428030000	36594000	1255300000	386700000	868560000	39241	1033	36913	240635;240636;240637;240638;240639;240640;240641;240642;240643;240644;240645;240646;240647;240648;240649;240650;240651;240652	322731;322732;322733;322734;322735;322736;322737;322738;322739;322740;322741;322742;322743;322744;322745;322746;322747;322748	322741		638	18	
NMSYQGFTK	1	Oxidation (M)	1090.4753	0.47534495	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	34.64	33.303	2	0.0034595	28322	160511_QHF_FH_JSI12i_2	65.305	59.823			0.72599	0.83357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72599	0.83357	NaN	1	0	Median	47618000	23872000	23746000	0	0	0	0	0	0	0	0	0	47618000	23872000	23746000	39242	5215	36914	240653	322749;322750	322750		2605	2	
NMSYQGFTK	1	Unmodified	1074.4804	0.48043033	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	34.55	33.623	2	0.00049275	29235	160511_QHF_FH_JSI9i_2	83.948	58.054			0.47316	0.43541	115.02	2	2	Median	0.23112	0.19305	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96866	0.98199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	309220000	159120000	150110000	14110000	11295000	2815200	0	0	0	295110000	147820000	147290000	0	0	0	39243	5215	36914	240654;240655;240656;240657;240658	322751;322752;322753;322754;322755;322756	322754			6	
NMTAEFK	1	Unmodified	839.38474	0.38473903	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.419	23.075	2	0.04193	19137	160511_QHF_FH_JSI11i_2	46.426	7.6341			0.56898	0.5719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56898	0.5719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33971000	21756000	12216000	0	0	0	0	0	0	33971000	21756000	12216000	0	0	0	39244	2561	36915	240659	322757	322757			1	
NMTIPEDILGEIAVSIVR	0	Unmodified	1969.0554	0.055412974	1587	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.31	103.22	3	5.8577E-06	90993	160511_QHF_FH_JSI11i_2	88.264	71.958			1.1434	1.139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1434	1.139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51738000	22137000	29601000	0	0	0	0	0	0	51738000	22137000	29601000	0	0	0	39245	1587	36916	240660	322758	322758			1	
NMTPGQNR	0	Unmodified	916.4185	0.41849878	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		6.4662	6.154	2	0.0061156	4244	160511_QHF_FH_JSI10i_2	63.565	38.642			1.3229	1.4714	1.9855	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2081	1.4922	NaN	1	0	Median	1.4485	1.4509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147280000	73868000	73413000	0	0	0	41678000	21579000	20099000	105600000	52289000	53314000	0	0	0	39246	1684	36917	240661;240662	322759;322760;322761	322761			3	
NMTPSPFLR	0	Unmodified	1061.5328	0.53280025	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	51.442	50.311	2	0.0019951	44030	160511_QHF_FH_JSI9i_2	66.621	56.207			0.96336	1.007	15.515	3	1	Plateau	1.0412	0.88427	NaN	1	0	Median	0.64075	0.77808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96336	1.0596	NaN	1	0	Median	176000000	94240000	81759000	54974000	27735000	27239000	57816000	34910000	22907000	0	0	0	63209000	31596000	31613000	39247	2105	36918	240663;240664;240665;240666;240667	322762;322763;322764;322765;322766	322763			5	
NMTVADSGTNHDSR	0	Unmodified	1503.6372	0.63721834	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	10.066	9.6397	2	0.00021698	7179	160511_QHF_FH_JSI11i_2	106.49	95.662			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14251000	0	14251000	0	0	0	0	0	0	8595500	0	8595500	5655200	0	5655200	39248	416	36919	240668;240669	322767;322768	322768			2	
NMTVEQLLTGSPTSPTVEPEKPTR	1	Unmodified	2611.3163	0.3163317	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		74.88	74.88	3	3.8314E-09	66962	160511_QHF_FH_JSI11i_3	94.389	83.551			1.901	1.7435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.901	1.7435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28337000	8696900	19640000	0	0	0	0	0	0	28337000	8696900	19640000	0	0	0	39249	4582	36920	240670	322769	322769			1	
NMVEDSK	1	Unmodified	821.35892	0.35891821	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.8439	7.6061	2	0.013252	5134	160511_QHF_FH_JSI9i_1	58.917	23.424			1.0362	1.2296	39.914	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0362	1.2296	NaN	1	0	Median	1.0433	1.0139	NaN	1	0	Median	2.0654	2.1838	NaN	1	1	Median	773700000	403670000	370030000	0	0	0	260900000	169500000	91404000	218850000	127860000	90987000	293950000	106310000	187640000	39250	679	36921	240671;240672;240673;240674	322770;322771;322772	322772			3	
NMVPQQALVIR	0	Unmodified	1267.7071	0.70707622	821;1032;2467	P05023;P13637;Q13733	ATP1A1;ATP1A3;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.97	3	5						3		1	3	3	4	61.386	57.864	2	1.2741E-05	50849	160511_QHF_FH_JSI9i_2	106.91	101.75			0.90864	0.99389	19.168	11	2	Median	1.0842	0.92405	NaN	1	0	Median	0.84449	0.99442	11.332	3	0	Median	1.0208	1.0463	4.4732	3	0	Plateau	0.76354	0.85391	27.559	4	2	Median	2781000000	1435300000	1345700000	328750000	167830000	160920000	515040000	287060000	227980000	803740000	430850000	372890000	1133500000	549590000	583900000	39251	821;1032;2467	36922	240675;240676;240677;240678;240679;240680;240681;240682;240683;240684;240685	322773;322774;322775;322776;322777;322778;322779;322780;322781	322776			9	
NMVQTAVVPVK	1	Unmodified	1184.6587	0.65872905	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.607	46.111	2	0.0013743	41501	160511_QHF_FH_JSI11i_1	76.465	71.118			0.58532	0.61287	14.744	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.66593	0.77179	NaN	1	1	Median	0.81414	0.80158	NaN	1	1	Median	0.58532	0.61057	NaN	1	1	Median	341420000	201830000	139600000	0	0	0	101270000	63017000	38254000	114900000	58479000	56424000	125250000	80333000	44917000	39252	2333	36923	240686;240687;240688	322782;322783;322784;322785	322782			4	
NMYELHK	1	Unmodified	933.43784	0.43783723	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0		By MS/MS	By MS/MS		11.3	6.6		1							2		1	2		19.546	18.759	2;3	0.03819	10578	160513_QHF_FH_JSI11Kac_6	53.554	24.216			0.70725	0.85856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70725	0.85856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159660000	97051000	62610000	0	0	0	159660000	97051000	62610000	0	0	0	0	0	0	39253	120	36924	240689;240690;240691	322786;322787;322788	322786			3	
NMYELHKK	2	Acetyl (K)	1103.5434	0.54336494	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		34.004	24.637	3	0.032321	13871	160513_QHF_FH_JSI11Kac_6	38.303	30.903			0.0078139	0.0075956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0078139	0.0075956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19257000	19156000	101610	0	0	0	0	0	0	19257000	19156000	101610	0	0	0	39254	120	36925	240692	322789	322789			1	
NMYPPPSFPTNK	1	Unmodified	1391.6544	0.65437195	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.415	51.749	2	0.0073496	47031	160511_QHF_FH_JSI12i_1	51.092	33.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39255	3260	36926	240693	322790	322790			1	
NNAASEGVLASFFNSLLSK	1	Unmodified	1967.9953	0.99525556	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.68	102.64	2	3.8583E-78	91803	160511_QHF_FH_JSI11i_3	281.07	257.39			0.96999	0.97731	30.589	3	2	Median	NaN	NaN	NaN	0	0	Median	0.96999	1.1334	NaN	1	0	Median	1.0481	0.97731	NaN	1	1	Median	0.61382	0.62945	NaN	1	1	Median	296570000	158460000	138100000	0	0	0	25340000	15103000	10236000	159060000	68210000	90847000	112170000	75151000	37017000	39256	312	36927	240694;240695;240696	322791;322792;322793;322794	322791			4	
NNALNPEEMR	0	Unmodified	1186.5401	0.54007047	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		27.206	26.955	2	1.9299E-07	23885	160511_QHF_FH_JSI10i_1	117.53	109.11			1.0619	1.1345	0.38638	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96694	1.1314	NaN	1	0	Median	1.1663	1.1376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	181420000	87657000	93763000	0	0	0	91042000	44831000	46211000	90378000	42826000	47552000	0	0	0	39257	439	36928	240697;240698	322795;322796;322797	322797			3	
NNALNPEEMRR	0	Unmodified	1342.6412	0.6411815	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	1	By matching	By MS/MS		By matching	2.25	0.433		3	1							1	1		2	21.49	20.745	3	0.0038502	17973	160511_QHF_FH_JSI10i_2	36.284	25.359			1.0644	1.1665	13.157	4	0	Median	1.0617	0.89785	NaN	1	0	Median	0.94867	1.1626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1136	1.1707	0.044389	2	0	Median	336420000	165900000	170520000	64986000	28882000	36103000	130530000	66929000	63599000	0	0	0	140900000	70089000	70814000	39258	439	36929	240699;240700;240701;240702	322798	322798			1	
NNALNQVVLWDK	1	Unmodified	1412.7412	0.74121312	1928	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.656	6	4	1							3	2	3	3	70.13	69.398	2	4.5661E-16	61014	160511_QHF_FH_JSI9i_2	163.34	143.56			0.92591	1.0188	20.87	10	5	Median	1.2933	1.1181	25.606	3	2	Plateau	0.89275	1.0571	7.8236	2	0	Median	0.83991	0.83695	37.073	2	1	Median	0.93129	1.0377	13.894	3	2	Median	996330000	502300000	494030000	166800000	77471000	89329000	256940000	129150000	127790000	304340000	140120000	164210000	268250000	155550000	112700000	39259	1928	36930	240703;240704;240705;240706;240707;240708;240709;240710;240711;240712;240713	322799;322800;322801;322802;322803;322804;322805;322806;322807;322808;322809;322810;322811;322812;322813;322814;322815	322810			17	
NNAQSIR	0	Unmodified	801.40931	0.4093143	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	4.7157	4.2266	2	0.039053	2298	160511_QHF_FH_JSI12i_2	47.849	15.378			0.46194	0.53388	89.905	2	0	Median	NaN	NaN	NaN	0	0	Median	0.23702	0.28271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90028	1.0082	NaN	1	0	Median	85327000	52381000	32946000	0	0	0	15199000	11799000	3400300	0	0	0	70127000	40581000	29546000	39260	4481	36931	240714;240715	322816	322816			1	
NNASHVVYPVPGNLEEEEWVRPVMK	1	Unmodified	2892.4229	0.42286246	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	3	1	77.795	77.598	3;4	2.6877E-09	69194	160511_QHF_FH_JSI11i_3	91.175	74.643			1.1218	1.0579	29.662	5	3	Median	NaN	NaN	NaN	0	0	Median	1.2514	1.5518	NaN	1	0	Median	1.0839	1.0232	13.863	3	3	Median	1.6574	1.649	NaN	1	0	Median	541250000	284210000	257040000	0	0	0	30618000	15540000	15078000	434300000	227650000	206650000	76332000	41022000	35310000	39261	3685	36932	240716;240717;240718;240719;240720	322817;322818;322819;322820;322821;322822;322823;322824	322820			8	
NNASTDYDLSDK	1	Unmodified	1341.5685	0.56845329	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	5.3	4	3	2		3	3				1	5	4	5	25.332	21.172	2	9.2718E-11	18198	160511_QHF_FH_JSI9i_1	145.91	139.61			0.91092	0.99241	19.331	12	2	Median	1.6599	1.3898	NaN	1	0	Median	0.8965	1.0727	9.5421	4	1	Median	0.90358	0.88365	17.741	4	1	Median	0.77223	0.8198	11.839	3	0	Plateau	9805900000	4803200000	5002800000	2524700000	1031100000	1493600000	2187100000	1253400000	933660000	2594400000	1369600000	1224800000	2499700000	1149100000	1350700000	39262	1484	36933	240721;240722;240723;240724;240725;240726;240727;240728;240729;240730;240731;240732;240733;240734;240735	322825;322826;322827;322828;322829;322830;322831;322832;322833;322834;322835;322836;322837;322838;322839;322840;322841;322842;322843;322844;322845;322846;322847;322848;322849;322850;322851;322852;322853;322854;322855	322847			31	
NNATKQMHFR	1	Acetyl (K)	1287.6142	0.61423847	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			27.3	19.397	3	0.034866	11398	160513_QHF_FH_JSI10Kac_6	38.804	30.894			0.70453	0.8278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70453	0.8278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11602000	7204300	4397800	0	0	0	11602000	7204300	4397800	0	0	0	0	0	0	39263	3947	36934	240736	322856	322856			0	
NNAVEDRK	1	Unmodified	944.46756	0.46755746	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		5										4	1	3.0571	2.7435	2;3	0.0041421	1712	160511_QHF_FH_JSI12i_2	69.812	49.53			6.4875	6.6616	56.319	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.4875	6.6616	55.933	2	2	Median	3.0369	3.3265	NaN	1	0	Median	94132000	19676000	74455000	0	0	0	0	0	0	71583000	13781000	57802000	22548000	5895000	16653000	39264	3897	36935	240737;240738;240739;240740;240741	322857;322858;322859;322860;322861	322857			5	
NNAYLAQSPQLYK	1	Unmodified	1508.7623	0.7623425	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.09	4	4					5			2	3	4	4	53.083	48.418	2	1.6863E-30	44154	160511_QHF_FH_JSI12i_1	185.96	164.51			0.93715	0.99866	13.824	13	4	Median	1.2306	1.0263	11.806	2	0	Median	0.84893	1.0416	8.9039	3	0	Plateau	1.0033	0.99461	10.709	4	2	Median	0.95283	1.0138	22.671	4	2	Median	1373200000	682260000	690910000	306630000	142710000	163910000	334810000	161390000	173420000	441100000	245490000	195610000	290630000	132670000	157970000	39265	1064	36936	240742;240743;240744;240745;240746;240747;240748;240749;240750;240751;240752;240753;240754	322862;322863;322864;322865;322866;322867;322868;322869;322870;322871;322872;322873;322874;322875;322876;322877;322878;322879	322866			17	
NNDFQLGKEFSMAR	1	Acetyl (K);Oxidation (M)	1713.7781	0.77806891	5111	Q9NXR8	ING3	Inhibitor of growth protein 3	yes	yes	1	0	1	1		By MS/MS		By MS/MS	14	0							2				1		1	72.769	62.155	2	0.0015406	33210	160513_QHF_FH_JSI10Kac_4	67.519	57.193			0.98332	1.0996	13.184	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84659	1.0017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1421	1.207	NaN	1	0	Median	5670900	2657300	3013600	0	0	0	3321700	1844500	1477300	0	0	0	2349200	812800	1536400	39266	5111	36937	240755;240756	322880;322881	322880	3311	2582	2	
NNDGYIDYAEFAK	1	Unmodified	1518.6627	0.66268803	3674	Q8NI22	MCFD2	Multiple coagulation factor deficiency protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.262	62.632	2	1.4147E-10	55765	160511_QHF_FH_JSI9i_1	151.13	133.31			1.1067	0.98221	16.403	4	0	Median	1.1062	0.89284	NaN	1	0	Median	0.75395	0.87974	NaN	1	0	Median	1.1072	1.0805	NaN	1	0	Median	1.1529	1.2395	NaN	1	0	Median	1350600000	655640000	694930000	234690000	109010000	125670000	382890000	190700000	192190000	342890000	162730000	180160000	390100000	193190000	196910000	39267	3674	36938	240757;240758;240759;240760	322882;322883;322884;322885;322886;322887;322888;322889;322890;322891;322892;322893;322894;322895	322895			14	
NNDLQDNYLSEQNK	1	Unmodified	1693.7544	0.75435658	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			36.461	36.1	2	0.0017953	32267	160511_QHF_FH_JSI10i_1	74.611	51.694			0.44555	0.52619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44555	0.52619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15464000	11552000	3911400	0	0	0	15464000	11552000	3911400	0	0	0	0	0	0	39268	3336	36939	240761	322896	322896			1	
NNDYQSIEELK	1	Unmodified	1351.6256	0.62557424	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	43.31	42.822	2	5.4889E-05	39041	160511_QHF_FH_JSI12i_1	94.692	87.472			0.90674	0.97194	49.832	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1958	1.3742	69.602	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1725	1.2003	NaN	1	0	Median	95408000	33573000	61835000	0	0	0	62292000	20550000	41742000	0	0	0	33116000	13023000	20093000	39269	4903	36940	240762;240763;240764;240765	322897;322898;322899;322900;322901	322898			5	
NNEDISIIPPLFTVSVDHR	0	Unmodified	2165.1117	0.1116823	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.707	2	4	2							2	2	4		101.01	100.92	2;3	1.8945E-15	88616	160511_QHF_FH_JSI11i_2	198.74	152.14			1.0466	1.0692	12.859	8	2	Median	1.2804	1.0722	0.54834	2	0	Median	0.77195	0.93862	18.566	2	0	Median	1.0466	1.065	14.355	4	2	Median	NaN	NaN	NaN	0	0	Median	1812700000	883440000	929300000	393670000	185530000	208140000	481950000	263070000	218880000	937120000	434840000	502270000	0	0	0	39270	1740	36941	240766;240767;240768;240769;240770;240771;240772;240773	322902;322903;322904;322905;322906;322907	322907			4	
NNEESPTATVAEQGEDITSKK	2	Unmodified	2247.0503	0.050263834	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	41.756	40.998	3	1.6115E-15	36720	160511_QHF_FH_JSI10i_1	134.29	121.58			0.87103	0.89181	16.72	5	3	Median	1.2374	1.0134	15.325	2	2	Median	0.70692	0.82178	NaN	1	0	Median	0.73893	0.71403	NaN	1	1	Median	0.87103	0.89181	NaN	1	0	Median	628310000	356090000	272220000	198220000	101960000	96266000	154400000	90673000	63726000	147570000	92214000	55353000	128120000	71244000	56878000	39271	2419	36942	240774;240775;240776;240777;240778	322908;322909;322910;322911;322912	322910			5	
NNEFIVIHNGIITNYK	1	Unmodified	1887.9843	0.98429694	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.81		8							5	2	4	4	3	71.746	67.856	2;3	8.3882E-17	35919	160513_QHF_FH_JSI11Kac_6	137.14	120.74			0.99504	1.0474	31.724	12	3	Median	1.2736	1.0885	6.2571	2	1	Median	0.84322	1.0273	57.835	4	2	Median	1.0867	1.0535	5.0201	3	0	Plateau	0.8793	1.0087	12.468	3	0	Median	1531000000	678410000	852590000	296720000	121070000	175650000	652810000	281990000	370820000	351840000	169160000	182680000	229630000	106180000	123450000	39272	2242	36943	240779;240780;240781;240782;240783;240784;240785;240786;240787;240788;240789;240790;240791	322913;322914;322915;322916;322917;322918;322919;322920;322921;322922;322923;322924;322925;322926;322927;322928;322929;322930;322931;322932;322933	322917			21	
NNEPYDYK	1	Unmodified	1041.4403	0.44033966	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.471	15.993	2	0.00067217	13705	160511_QHF_FH_JSI12i_1	95.815	60.991			1.0301	1.0555	3.895	3	0	Plateau	1.2605	1.0322	NaN	1	0	Median	0.9118	1.0555	NaN	1	0	Median	1.0301	0.97846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	244920000	134630000	110290000	72459000	38672000	33788000	100190000	53566000	46620000	72275000	42395000	29880000	0	0	0	39273	3176	36944	240792;240793;240794;240795	322934;322935;322936;322937	322935			4	
NNEVDLLFLSELQVLHDISSLLSR	0	Unmodified	2753.46	0.45995947	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.08	97.361	3	4.0421E-42	57626	160513_QHF_FH_JSI10Kac_6	165.47	146.97			0.83063	0.99178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83063	0.99178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74543000	39401000	35141000	0	0	0	74543000	39401000	35141000	0	0	0	0	0	0	39274	564	36945	240796	322938;322939	322939			2	
NNEVSLAALK	1	Unmodified	1057.5768	0.57677356	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			44.468	44.045	2	0.004461	39598	160511_QHF_FH_JSI10i_1	57.55	33.577			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39275	3262	36946	240797	322940	322940			1	
NNFAALTNLQDR	0	Unmodified	1375.6844	0.68442653	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		57.487	56.687	2	0.00026612	49999	160511_QHF_FH_JSI10i_2	76.332	64.618			1.7041	1.817	17.195	3	2	Median	1.7041	1.4378	NaN	1	1	Median	1.4645	1.817	NaN	1	0	Median	2.0474	2.0104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	182200000	64168000	118040000	39879000	15694000	24185000	59973000	23106000	36868000	82351000	25368000	56983000	0	0	0	39276	2273	36947	240798;240799;240800	322941;322942;322943	322943			3	
NNFAVGYR	0	Unmodified	939.45626	0.45626449	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.76	3	6	2					6	4	5	7	4	5	32.212	27.222	2	0.00023496	23064	160511_QHF_FH_JSI12i_2	117.62	70.957			1.0757	1.0561	31.02	14	6	Median	1.2565	1.067	13.947	2	1	Median	0.86823	1.0369	31.867	4	2	Median	1.0778	1.0561	16.914	4	1	Median	1.0223	1.1228	51.489	4	2	Median	4540700000	2076100000	2464600000	764330000	357870000	406460000	1042400000	451490000	590950000	1639400000	761920000	877450000	1094500000	504830000	589710000	39277	1570	36948	240801;240802;240803;240804;240805;240806;240807;240808;240809;240810;240811;240812;240813;240814;240815;240816;240817;240818;240819;240820;240821	322944;322945;322946;322947;322948;322949;322950;322951;322952;322953;322954;322955;322956;322957;322958;322959;322960;322961;322962;322963;322964;322965;322966;322967;322968;322969;322970;322971;322972;322973;322974	322946			31	
NNFEGEVTK	1	Unmodified	1036.4825	0.48253882	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.66	4	3	3			3	3			3	5	4	4	22.979	19.146	2	0.00017327	16536	160511_QHF_FH_JSI11i_1	87.308	65.177			0.79299	0.87619	28.927	14	5	Median	0.83247	0.69456	19.487	2	1	Median	0.71218	0.85551	11.698	4	2	Median	1.0358	1.0223	40.508	4	1	Median	0.87008	0.92995	37.049	4	1	Median	5352000000	2884300000	2467600000	1103200000	516450000	586770000	1367100000	782760000	584300000	1584100000	905500000	678630000	1297500000	679630000	617920000	39278	867	36949	240822;240823;240824;240825;240826;240827;240828;240829;240830;240831;240832;240833;240834;240835;240836;240837	322975;322976;322977;322978;322979;322980;322981;322982;322983;322984;322985;322986;322987;322988;322989;322990;322991;322992;322993;322994;322995;322996	322976			22	
NNFFVEK	1	Unmodified	896.43922	0.43921744	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			35.764	34.808	2	0.014075	30557	160511_QHF_FH_JSI10i_2	66.799	48.069			0.99648	1.2277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99648	1.2277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71240000	36065000	35175000	0	0	0	71240000	36065000	35175000	0	0	0	0	0	0	39279	2856	36950	240838	322997	322997			1	
NNFLNSLPEEMESLVR	0	Unmodified	1890.9146	0.9145624	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.69	101.5	2	1.695E-21	87448	160511_QHF_FH_JSI12i_2	170.18	148.95			0.89077	1.0131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89077	1.0131	NaN	1	0	Median	48531000	25335000	23196000	0	0	0	0	0	0	0	0	0	48531000	25335000	23196000	39280	4803	36951	240839	322998	322998			1	
NNFLPNADMETR	0	Unmodified	1420.6405	0.6405128	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								2	4	2	4	50.38	49.614	2	4.6299E-07	42424	160511_QHF_FH_JSI12i_2	108.7	88.393			0.93731	0.98067	24.369	9	8	Median	1.3863	1.21	26.338	2	2	Median	0.93731	0.91855	24.646	3	3	Plateau	0.84633	0.83907	22.053	2	1	Median	0.77212	0.81538	18.551	2	2	Median	391430000	220680000	170760000	42958000	20426000	22532000	150080000	85075000	65009000	124570000	73447000	51128000	73818000	41728000	32090000	39281	3921	36952	240840;240841;240842;240843;240844;240845;240846;240847;240848;240849;240850;240851	322999;323000;323001;323002;323003;323004;323005;323006;323007;323008;323009;323010;323011	323001			13	
NNFSDTGNFGFGIQEHIDLGIK	1	Unmodified	2422.1553	0.15533803	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	1	4	2	93.306	92.866	3	5.2117E-10	79843	160511_QHF_FH_JSI12i_2	104.63	96.031			0.92666	0.98108	36.331	7	3	Median	0.92666	0.8036	NaN	1	0	Median	0.80469	0.98108	NaN	1	0	Median	1.1151	1.0989	48.26	4	3	Median	0.84841	0.93652	NaN	1	0	Median	209760000	103780000	105980000	30197000	11229000	18969000	35464000	17128000	18337000	107220000	54249000	52970000	36882000	21175000	15707000	39282	2038	36953	240852;240853;240854;240855;240856;240857;240858;240859	323012;323013;323014;323015;323016;323017;323018;323019;323020;323021;323022;323023;323024;323025;323026	323012			15	
NNGAGYFLEHLAFK	1	Unmodified	1579.7783	0.77832691	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		8	2						2	3	3	5	1	82.379	80.581	2;3	1.1111E-07	72812	160511_QHF_FH_JSI11i_3	98.156	90.269			0.95874	1.1056	28.39	11	7	Median	1.0449	0.89566	30.006	3	2	Median	0.93362	1.1323	3.7235	3	1	Plateau	1.3652	1.3528	31.328	4	3	Median	0.68552	0.77263	NaN	1	1	Median	932210000	472380000	459830000	160540000	94725000	65818000	269350000	148160000	121190000	387680000	173860000	213820000	114640000	55643000	58997000	39283	1379	36954	240860;240861;240862;240863;240864;240865;240866;240867;240868;240869;240870;240871	323027;323028;323029;323030;323031;323032;323033;323034;323035;323036;323037;323038;323039	323028			12	
NNGESWELMDSAGNK	1	Unmodified	1650.6944	0.69439886	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			49.605	49.185	2	1.7902E-05	44306	160511_QHF_FH_JSI10i_1	84.718	70.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39284	416	36955	240872	323040	323040			1	
NNGGAAAMEK	1	Unmodified	961.42873	0.42872911	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	1	3	2	7.3129	5.0326	2	0.0005431	4356	160511_QHF_FH_JSI11i_1	71.349	52.618			0.85323	0.89261	28.736	7	0	Median	1.3335	1.084	NaN	1	0	Median	0.6836	0.8301	NaN	1	0	Median	1.0157	0.98626	23.151	3	0	Median	0.63619	0.68472	37.497	2	0	Median	1071500000	535310000	536240000	271180000	107060000	164130000	274140000	161170000	112970000	244150000	133590000	110560000	282070000	133490000	148580000	39285	5697	36956	240873;240874;240875;240876;240877;240878;240879	323041;323042;323043;323044;323045;323046;323047;323048;323049;323050	323042			10	
NNGNWQEALQFVPK	1	Unmodified	1643.8056	0.80560429	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	2	1		82.804	82.349	2	0.00044901	74778	160511_QHF_FH_JSI10i_1	96.103	71.759			0.87067	0.79847	57.631	4	4	Median	1.1379	0.98471	NaN	1	1	Median	0.93579	1.1135	89.327	2	2	Median	0.66622	0.64746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	188620000	78140000	110480000	35786000	19260000	16526000	135060000	48935000	86127000	17771000	9945400	7825300	0	0	0	39286	3217	36957	240880;240881;240882;240883	323051;323052;323053;323054	323052			4	
NNGVLFENQLLQIGVK	1	Unmodified	1784.9785	0.97848328	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	96.183	95.851	2	2.4987E-05	82498	160511_QHF_FH_JSI12i_2	113.38	99.473			0.38585	0.39922	122.59	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99469	0.94991	NaN	1	1	Median	0.14967	0.16778	NaN	1	1	Median	81938000	63697000	18241000	0	0	0	0	0	0	10104000	6030400	4073300	71834000	57666000	14168000	39287	726	36958	240884;240885	323055;323056	323056			2	
NNGYAISTPTSEQYRGDGIAAR	0	Unmodified	2340.1095	0.10945047	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	45.55	44.858	3	6.9653E-08	38580	160511_QHF_FH_JSI11i_2	90.22	74.585			1.1141	1.1043	22.669	6	1	Median	1.386	1.2239	NaN	1	0	Median	0.74252	0.92246	NaN	1	0	Median	1.4689	1.4259	18.565	2	1	Median	0.90051	0.94794	7.0622	2	0	Median	230540000	111630000	118900000	32634000	12189000	20444000	60185000	37690000	22495000	73888000	27343000	46545000	63830000	34410000	29419000	39288	1020	36959	240886;240887;240888;240889;240890;240891;240892	323057;323058;323059;323060;323061;323062;323063;323064;323065;323066;323067;323068;323069;323070	323063			14	
NNIAMALEVTYR	0	Unmodified	1393.7024	0.70238478	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.379	68.481	2	3.8945E-05	59949	160511_QHF_FH_JSI11i_2	103.34	92.818			0.96384	0.98557	4.9307	4	0	Median	1.1031	0.96435	NaN	1	0	Median	0.78412	0.95322	NaN	1	0	Median	0.98655	1.0073	NaN	1	0	Median	0.94165	1.0627	NaN	1	0	Median	251920000	124960000	126970000	57617000	24451000	33166000	53914000	28761000	25153000	90027000	45533000	44494000	50366000	26212000	24154000	39289	1246	36960	240893;240894;240895;240896	323071;323072;323073;323074;323075;323076;323077;323078;323079;323080	323078			10	
NNIAMALEVTYR	0	Oxidation (M)	1409.6973	0.6972994	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	1	1	2	71.981	61.319	2	0.00044461	30424	160513_QHF_FH_JSI12Kac_5	84.658	69.992			0.93234	1.0203	14.771	3	0	Plateau	1.5986	1.3388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0939	1.057	NaN	1	0	Median	0.91647	1.0203	NaN	1	0	Median	17873000	8908600	8963900	4456600	1792300	2664300	0	0	0	6316200	3382500	2933700	7099700	3733800	3366000	39290	1246	36960	240897;240898;240899;240900;240901	323081;323082;323083;323084;323085;323086	323084		879	6	
NNIDTHAR	0	Unmodified	939.45224	0.45224175	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	5.0779	4.6863	2	0.0034061	2568	160511_QHF_FH_JSI12i_2	72.789	58.793			0.77668	0.85312	9.5081	4	0	Median	1.1094	0.92407	NaN	1	0	Median	0.67621	0.82557	NaN	1	0	Median	0.76288	0.74201	NaN	1	0	Median	0.79072	0.8816	NaN	1	0	Median	412220000	225570000	186650000	69001000	33764000	35236000	93661000	53054000	40607000	151580000	81217000	70363000	97981000	57537000	40444000	39291	387	36961	240902;240903;240904;240905	323087	323087			1	
NNIDVFYFSTLYPLHILFVEDGK	1	Unmodified	2743.3898	0.38975464	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	98.87	90.301	2;3	9.5347E-75	54390	160513_QHF_FH_JSI10Kac_6	214.31	187.23			1.1319	1.1334	11.593	5	1	Median	1.5754	1.3519	9.5932	2	1	Median	0.9634	1.1313	NaN	1	0	Median	1.1319	1.0883	NaN	1	0	Median	1.0725	1.1334	NaN	1	0	Median	2173300000	1049600000	1123700000	699500000	303470000	396040000	944420000	479350000	465060000	258710000	125110000	133610000	270690000	141650000	129030000	39292	2296	36962	240906;240907;240908;240909;240910	323088;323089;323090;323091;323092;323093;323094	323094			7	
NNIFYILLR	0	Unmodified	1164.6655	0.66552898	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	90.46	82.669	2	9.3357E-05	45867	160513_QHF_FH_JSI11Kac_6	113.91	85.731			1.003	0.85961	71.351	5	3	Median	1.003	0.85961	NaN	1	1	Median	0.40279	0.47163	38.442	2	2	Median	2.2003	2.1482	NaN	1	0	Median	1.4524	1.5501	NaN	1	0	Median	468260000	271500000	196750000	50240000	28509000	21731000	261080000	170200000	90876000	91891000	33898000	57993000	65045000	38890000	26155000	39293	207	36963	240911;240912;240913;240914;240915	323095;323096;323097;323098	323095			4	
NNIIQTWR	0	Unmodified	1043.5512	0.55122751	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		2	0		3								1	1	1		43.152	42.322	2	0.0070883	37430	160511_QHF_FH_JSI10i_2	60.589	43.813			1.3374	1.2633	5.5865	3	0	Median	1.4868	1.2633	NaN	1	0	Median	0.98142	1.2065	NaN	1	0	Median	1.3374	1.3483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	595890000	225760000	370140000	159170000	48294000	110870000	188550000	82700000	105850000	248180000	94762000	153420000	0	0	0	39294	1519	36964	240916;240917;240918	323099	323099			1	
NNIKLYVR	1	Acetyl (K)	1060.6029	0.60292873	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.748							2	4	4	2	2	3	3	54.32	44.183	2	0.00011502	22735	160513_QHF_FH_JSI12Kac_5	127.12	85.009			0.56614	0.60876	45.949	10	2	Median	0.77581	0.6738	12.318	2	0	Median	0.92559	1.1108	2.1986	2	0	Median	0.37681	0.35843	13.305	3	1	Plateau	0.53671	0.58322	4.6583	3	1	Plateau	270190000	188050000	82137000	21799000	13048000	8750700	56346000	31476000	24871000	146370000	114230000	32141000	45674000	29300000	16374000	39295	898;880	36965	240919;240920;240921;240922;240923;240924;240925;240926;240927;240928	323100;323101;323102;323103;323104;323105;323106;323107;323108;323109;323110;323111;323112;323113	323107	617		14	
NNIPEPVVIGIVWSSVMSTVEWNK	1	Unmodified	2697.3836	0.3836234	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.62		2	1						5	3	1	2	2	103.05	98.176	3	4.6251E-27	53773	160513_QHF_FH_JSI9Kac_6	140.45	133			1.0173	0.94779	28.769	7	5	Median	1.0173	0.89562	20.043	3	2	Median	0.91073	1.0467	NaN	1	0	Median	1.3617	1.3413	27.803	2	2	Median	0.76317	0.79333	NaN	1	1	Median	324870000	162460000	162410000	73741000	33479000	40262000	187360000	97523000	89842000	44944000	18728000	26216000	18823000	12732000	6090500	39296	3218	36966	240929;240930;240931;240932;240933;240934;240935;240936	323114;323115;323116;323117;323118;323119;323120;323121;323122;323123;323124	323120			11	
NNIPEPVVIGIVWSSVMSTVEWNKK	2	Unmodified	2825.4786	0.47858642	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				100.04	90.888	3	1.5588E-05	52482	160513_QHF_FH_JSI9Kac_6	71.528	60.624			0.62458	0.53946	NaN	1	0	Median	0.62458	0.53946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113730000	71254000	42475000	113730000	71254000	42475000	0	0	0	0	0	0	0	0	0	39297	3218	36967	240937	323125	323125			1	
NNIPYFETSAK	1	Unmodified	1282.6194	0.61936665	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			3	3	3	1	50.214	48.24	2	0.00015992	42174	160511_QHF_FH_JSI9i_2	83	63.729			1.3515	1.3271	26.732	9	4	Median	1.5317	1.3271	23.469	3	2	Median	1.1116	1.3703	33.62	3	2	Median	1.1994	1.1741	32.964	3	0	Median	NaN	NaN	NaN	0	0	Median	3503700000	1590200000	1913400000	1461800000	606350000	855460000	1039400000	564950000	474460000	1002400000	418920000	583520000	0	0	0	39298	1728	36968	240938;240939;240940;240941;240942;240943;240944;240945;240946;240947	323126;323127;323128;323129;323130;323131;323132;323133;323134;323135;323136;323137;323138	323134			13	
NNIQQVFQK	1	Unmodified	1117.588	0.58800695	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.304	36.86	2	0.0008901	31488	160511_QHF_FH_JSI11i_2	77.282	61.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39299	4135	36969	240948	323139	323139			1	
NNKKTNK	3	2 Acetyl (K)	929.49304	0.49304393	3886	Q92793	CREBBP	CREB-binding protein	yes	no	2	0	0	2			By MS/MS	By MS/MS	13	0						2						1	1	5.6218	-1.6131	2	0.013252	1891	160513_QHF_FH_JSI12Kac_3	101.41	68.802			0.89478	0.9325	20.341	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0869	1.0768	NaN	1	0	Median	0.7366	0.80758	NaN	1	0	Median	59614000	31856000	27759000	0	0	0	0	0	0	24691000	11922000	12769000	34923000	19934000	14989000	39300	3886	36970	240949;240950	323140;323141	323141	2978;2979;2980		2	
NNKKTNKNK	4	3 Acetyl (K)	1213.6415	0.64149908	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	1.24				4	10	7	3	4		1	7	10	10	10.81	3.0165	2;3	1.4137E-16	3641	160513_QHF_FH_JSI11Kac_2	160.59	126.33			0.91065	1.0013	28.348	21	0	Median	1.1619	0.95527	NaN	1	0	Median	0.84426	0.99417	9.1626	7	0	Median	1.1463	1.1382	49.601	7	0	Median	0.9098	1.0067	9.8775	6	0	Median	2732200000	1543500000	1188800000	6075700	2638400	3437300	1058000000	642360000	415650000	535290000	268430000	266860000	1132900000	630050000	502810000	39301	3886	36971	240951;240952;240953;240954;240955;240956;240957;240958;240959;240960;240961;240962;240963;240964;240965;240966;240967;240968;240969;240970;240971;240972;240973;240974;240975;240976;240977;240978	323142;323143;323144;323145;323146;323147;323148;323149;323150;323151;323152;323153;323154;323155;323156;323157;323158;323159;323160;323161;323162;323163;323164;323165;323166;323167;323168;323169;323170;323171;323172;323173;323174;323175;323176;323177;323178;323179;323180;323181;323182;323183	323143	2978;2979;2980;2981		42	
NNKKTNKNKSSISR	4	4 Acetyl (K)	1785.9333	0.933324	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	4	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	1.61				6	8	8	8	18	9	12	15	16	14	30.839	21.296	2;3	1.1052E-225	5594	160513_QHF_FH_JSI9Kac_3	305.6	268.05			1.0525	1.0427	237.71	53	8	Median	1.0329	0.85957	164.16	11	1	Median	0.71293	0.83018	281.63	15	4	Median	1.1134	1.0984	205.21	13	1	Median	588.9	1.2066	257.5	14	2	Linear	21949000000	9222300000	12726000000	13036000000	6339000000	6696900000	2058000000	1180300000	877680000	2817500000	743250000	2074300000	4037400000	959770000	3077700000	39302	3886	36972	240979;240980;240981;240982;240983;240984;240985;240986;240987;240988;240989;240990;240991;240992;240993;240994;240995;240996;240997;240998;240999;241000;241001;241002;241003;241004;241005;241006;241007;241008;241009;241010;241011;241012;241013;241014;241015;241016;241017;241018;241019;241020;241021;241022;241023;241024;241025;241026;241027;241028;241029;241030;241031;241032;241033;241034;241035	323184;323185;323186;323187;323188;323189;323190;323191;323192;323193;323194;323195;323196;323197;323198;323199;323200;323201;323202;323203;323204;323205;323206;323207;323208;323209;323210;323211;323212;323213;323214;323215;323216;323217;323218;323219;323220;323221;323222;323223;323224;323225;323226;323227;323228;323229;323230;323231;323232;323233;323234;323235;323236;323237;323238;323239;323240;323241;323242;323243;323244;323245;323246;323247;323248;323249;323250;323251;323252;323253;323254;323255;323256;323257;323258;323259;323260;323261;323262;323263;323264;323265;323266;323267;323268;323269;323270;323271;323272;323273;323274;323275;323276;323277;323278	323214	2978;2979;2980;2981		95	
NNKKTSKNK	4	3 Acetyl (K)	1186.6306	0.63060004	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	1.48				6	10	7	3	4	2	5	9	8	10	11.881	3.791	2;3	3.2501E-06	3787	160513_QHF_FH_JSI10Kac_2	120.45	96.221			0.90889	0.96722	117.89	26	1	Median	1.3101	1.1405	13.244	2	0	Median	0.84738	0.9582	203.2	9	1	Median	1.0632	1.0624	12.919	8	0	Median	0.85427	0.89318	7.5564	7	0	Median	5311800000	2759700000	2552000000	804700000	321500000	483200000	1445500000	763410000	682060000	1174700000	615840000	558840000	1886900000	1059000000	827920000	39303	2285	36973	241036;241037;241038;241039;241040;241041;241042;241043;241044;241045;241046;241047;241048;241049;241050;241051;241052;241053;241054;241055;241056;241057;241058;241059;241060;241061;241062;241063;241064;241065;241066;241067	323279;323280;323281;323282;323283;323284;323285;323286;323287;323288;323289;323290;323291;323292;323293;323294;323295;323296;323297;323298;323299;323300;323301;323302;323303;323304;323305;323306;323307;323308;323309;323310;323311;323312;323313;323314;323315;323316;323317;323318;323319;323320;323321;323322;323323;323324;323325;323326;323327;323328;323329	323296	2390;2394;2395;2396		50	
NNKKTSKNKSSLSR	4	4 Acetyl (K)	1758.9224	0.92242497	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	4	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	1.59				6	7	10	6	19	8	8	17	14	17	33.58	23.998	2;3	4.8318E-153	5671	160513_QHF_FH_JSI9Kac_3	267.77	216.05			1.0248	1.0071	221.78	54	9	Median	1.171	0.9998	293.34	7	2	Median	0.78305	0.90826	201.08	16	3	Median	1.0283	0.99206	187.91	14	1	Median	1.1221	1.2332	236.5	17	3	Median	11861000000	5371600000	6489000000	4445100000	2077800000	2367300000	2885100000	2090400000	794740000	1793300000	479150000	1314200000	2737000000	724200000	2012800000	39304	2285	36974	241068;241069;241070;241071;241072;241073;241074;241075;241076;241077;241078;241079;241080;241081;241082;241083;241084;241085;241086;241087;241088;241089;241090;241091;241092;241093;241094;241095;241096;241097;241098;241099;241100;241101;241102;241103;241104;241105;241106;241107;241108;241109;241110;241111;241112;241113;241114;241115;241116;241117;241118;241119;241120;241121;241122;241123	323330;323331;323332;323333;323334;323335;323336;323337;323338;323339;323340;323341;323342;323343;323344;323345;323346;323347;323348;323349;323350;323351;323352;323353;323354;323355;323356;323357;323358;323359;323360;323361;323362;323363;323364;323365;323366;323367;323368;323369;323370;323371;323372;323373;323374;323375;323376;323377;323378;323379;323380;323381;323382;323383;323384;323385;323386;323387;323388;323389;323390;323391;323392;323393;323394;323395;323396;323397;323398;323399;323400;323401;323402;323403;323404;323405;323406;323407;323408;323409;323410;323411;323412;323413	323350	2390;2394;2395;2396		84	
NNLAGAEELFAR	0	Unmodified	1303.6521	0.65206377	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.086	62.705	2	8.8113E-05	56796	160511_QHF_FH_JSI10i_1	136.52	94.228			1.3215	1.5686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3215	1.5686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298410000	114710000	183700000	0	0	0	298410000	114710000	183700000	0	0	0	0	0	0	39305	2155	36975	241124	323414	323414			1	
NNLAGAEELFARK	1	Unmodified	1431.747	0.74702678	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.42		8	6						1	2	2	6	5	55.648	54.449	2;3	1.529E-07	46927	160511_QHF_FH_JSI11i_2	139.31	123.72			1.1541	1.1412	33.18	15	4	Median	1.2167	1.0333	14.209	2	0	Median	1.1683	1.4519	1.4179	2	0	Median	1.2547	1.2153	42.66	6	4	Median	0.91215	1.0122	26.995	5	0	Median	3302400000	1544700000	1757700000	372630000	130910000	241720000	471510000	195440000	276070000	1269600000	576310000	693260000	1188700000	642060000	546610000	39306	2155	36976	241125;241126;241127;241128;241129;241130;241131;241132;241133;241134;241135;241136;241137;241138;241139	323415;323416;323417;323418;323419;323420;323421;323422;323423;323424;323425;323426;323427;323428;323429;323430;323431;323432;323433;323434;323435;323436	323426			22	
NNLASCYLKQGK	2	Acetyl (K)	1436.7082	0.70819844	2258;4625;4985	Q9H0B6;Q07866;Q9NSK0	KLC2;KLC1;KLC4	Kinesin light chain 2;Kinesin light chain 1;Kinesin light chain 4	no	no	1	0	0	1			By MS/MS		14	0							1					1		54.733	43.878	2	0.00012669	25428	160513_QHF_FH_JSI11Kac_4	98.249	80.385			0.22481	0.20925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22481	0.20925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1295100	1059200	235900	0	0	0	0	0	0	1295100	1059200	235900	0	0	0	39307	4625;2258;4985	36977	241140	323437	323437	2360		1	
NNLIQQK	1	Unmodified	856.47667	0.47666558	4947;3002	Q9NR56;Q5VZF2	MBNL1;MBNL2	Muscleblind-like protein 1;Muscleblind-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	1	3	1	13.348	11.765	2	0.013926	9938	160511_QHF_FH_JSI12i_1	67.035	53.998			1.0342	1.0183	32.1	6	1	Median	1.3723	1.1269	NaN	1	0	Median	0.81837	0.95492	NaN	1	0	Median	0.97322	0.95215	40.112	3	1	Median	1.1999	1.2759	NaN	1	0	Median	543740000	271540000	272200000	107920000	42266000	65651000	139850000	80647000	59208000	187650000	92422000	95233000	108310000	56206000	52107000	39308	4947;3002	36978	241141;241142;241143;241144;241145;241146	323438;323439;323440;323441;323442	323439			5	
NNLLNTKLEK	2	Acetyl (K)	1227.6823	0.68230126	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			59.983	49.294	2	0.024146	27099	160513_QHF_FH_JSI10Kac_4	59.426	44.759			3.6658	4.2514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.6658	4.2514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1633400	149200	1484200	0	0	0	1633400	149200	1484200	0	0	0	0	0	0	39309	4290	36979	241147	323443	323443	3107		1	
NNLLTNK	1	Unmodified	815.45012	0.45011648	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.73	3	6					1			2	3	3	2	16.352	14.989	2	0.0088673	12788	160511_QHF_FH_JSI12i_1	81.613	13.532			0.76958	0.77247	66.854	9	6	Median	1.4192	1.2167	144.54	2	2	Median	0.5424	0.62729	62.455	3	2	Median	1.1456	1.1235	52.982	2	1	Median	0.68793	0.73834	8.8384	2	1	Median	967420000	515790000	451620000	176730000	74856000	101870000	373220000	221740000	151480000	132930000	80733000	52200000	284540000	138460000	146070000	39310	5536	36980	241148;241149;241150;241151;241152;241153;241154;241155;241156;241157	323444;323445;323446;323447;323448;323449;323450;323451;323452;323453	323445			10	
NNLNPTWK	1	Unmodified	985.49813	0.49812931	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			28.842	27.914	2	0.0054523	24528	160511_QHF_FH_JSI10i_2	73.665	47.928			0.94367	1.1613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94367	1.1613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94180000	47678000	46502000	0	0	0	94180000	47678000	46502000	0	0	0	0	0	0	39311	4320	36981	241158	323454	323454			1	
NNLPFLTNVTLPR	0	Unmodified	1497.8304	0.83036248	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.9	91.36	2	0.00033506	78912	160511_QHF_FH_JSI12i_2	71.555	63.668			0.83437	1.3047	30.91	3	0	Plateau	0.83437	0.70555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.365	1.3047	NaN	1	0	Median	0.81648	0.90705	NaN	1	0	Median	38853000	19257000	19597000	9992600	6374200	3618500	0	0	0	17066000	7387800	9678200	11795000	5494600	6300200	39312	3855	36982	241159;241160;241161;241162	323455;323456;323457;323458;323459	323455			5	
NNLPSNDSSK	1	Unmodified	1074.4942	0.49416614	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5	5.66	4					2				1	2	2	1	8.2093	5.5291	2	0.004372	3640	160513_QHF_FH_JSI11Kac_3	63.816	56.921			1.0026	0.97445	5.8223	6	0	Median	1.1786	0.97748	NaN	1	0	Median	0.79564	0.93717	0.12706	2	0	Median	1.0496	1.0219	7.1639	2	0	Median	0.99653	1.0514	NaN	1	0	Median	808680000	428540000	380150000	192520000	94366000	98150000	219060000	128420000	90647000	179430000	97197000	82235000	217670000	108560000	109110000	39313	1117	36983	241163;241164;241165;241166;241167;241168	323460;323461;323462	323460			3	
NNLRDWLR	0	Unmodified	1085.573	0.57302558	1431;3109	Q6P5R6;P35268	RPL22L1;RPL22	60S ribosomal protein L22-like 1;60S ribosomal protein L22	no	no	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			45.946	44.937	3	0.055888	39544	160511_QHF_FH_JSI10i_2	20.87	8.586			1.1145	1.1568	2.4509	2	0	Median	1.3423	1.177	NaN	1	0	Median	0.92535	1.1369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63506000	30727000	32779000	17651000	8693000	8957700	45856000	22034000	23821000	0	0	0	0	0	0	39314	3109;1431	36984	241169;241170	323463	323463			1	
NNLSFIETSALDSTNVEEAFK	1	Unmodified	2328.1121	0.11213581	2722	Q15907	RAB11B	Ras-related protein Rab-11B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								5	3	5	3	100.44	100.31	2;3	2.502E-140	90981	160511_QHF_FH_JSI10i_1	283.68	263.25			0.92689	0.91752	23.259	14	4	Median	0.90724	0.79693	19.296	5	2	Median	0.71364	0.83425	12.173	2	0	Median	1.2248	1.1845	22.513	4	2	Median	0.74422	0.76086	15.825	3	0	Plateau	566020000	302680000	263340000	112750000	52101000	60646000	160190000	91577000	68608000	158210000	80433000	77780000	134870000	78565000	56308000	39315	2722	36985	241171;241172;241173;241174;241175;241176;241177;241178;241179;241180;241181;241182;241183;241184;241185;241186	323464;323465;323466;323467;323468;323469;323470;323471;323472;323473;323474;323475;323476;323477;323478;323479;323480;323481;323482;323483;323484;323485;323486	323476			23	
NNMFEISDR	0	Unmodified	1124.4921	0.49205765	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	43.443	42.594	2	0.0037611	36402	160511_QHF_FH_JSI12i_2	58.916	49.522			1.0485	1.0505	9.9282	5	0	Median	1.0485	0.90294	NaN	1	0	Median	0.76218	0.91769	NaN	1	0	Median	1.0817	1.0626	1.6221	2	0	Median	1.0182	1.1283	NaN	1	0	Median	290310000	141100000	149210000	43385000	22297000	21088000	56763000	33596000	23166000	126490000	55962000	70532000	63667000	29245000	34422000	39316	4989	36986	241187;241188;241189;241190;241191	323487;323488;323489;323490;323491;323492;323493	323487			7	
NNMQSGVNNTK	1	Unmodified	1205.5459	0.54588413	310	O43181	NDUFS4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	7.3369	6.9398	2	2.507E-10	4774	160511_QHF_FH_JSI10i_1	140.16	129.47			0.91135	0.96802	36.828	5	2	Median	1.1053	0.90222	70.23	2	2	Median	0.78283	0.91302	NaN	1	0	Median	1.1899	1.1702	NaN	1	0	Median	0.91135	0.96802	NaN	1	0	Median	536100000	262610000	273500000	165330000	77896000	87435000	148390000	75282000	73108000	117010000	57049000	59965000	105370000	52379000	52990000	39317	310	36987	241192;241193;241194;241195;241196	323494;323495;323496;323497;323498;323499;323500;323501	323499			8	
NNMQSGVNNTK	1	Oxidation (M)	1221.5408	0.54079876	310	O43181	NDUFS4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By matching	1	0	2										1		1	4.685	4.3946	2	0.00043917	2338	160511_QHF_FH_JSI10i_1	76.85	69.955			1.191	1.2889	17.253	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99634	1.1409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4238	1.4561	NaN	1	0	Median	55830000	30328000	25502000	0	0	0	29585000	16720000	12865000	0	0	0	26245000	13609000	12637000	39318	310	36987	241197;241198	323502	323502		124	1	
NNNIDAAIENIENMLTSENK	1	Unmodified	2246.0485	0.048489695	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	102.14	102	2;3	3.109E-52	87943	160511_QHF_FH_JSI12i_2	248.25	202.97			1.2359	1.3635	37.722	3	3	Median	NaN	NaN	NaN	0	0	Median	2.0267	2.5149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1824	1.3128	5.3576	2	2	Median	640680000	261070000	379610000	0	0	0	287150000	93857000	193290000	0	0	0	353530000	167210000	186320000	39319	1544	36988	241199;241200;241201;241202	323503;323504;323505;323506	323503			4	
NNNLAVTSK	1	Unmodified	959.50361	0.50360861	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.321	11.902	2	0.00077985	9766	160511_QHF_FH_JSI12i_1	74.269	50.84			0.88081	0.82336	16.153	4	0	Median	1.0016	0.8215	NaN	1	0	Median	0.55813	0.64732	NaN	1	0	Median	0.98782	0.95647	NaN	1	0	Median	0.78539	0.82523	NaN	1	0	Median	472100000	237320000	234780000	84514000	32730000	51784000	103260000	61364000	41898000	161430000	84611000	76815000	122900000	58618000	64281000	39320	1190	36989	241203;241204;241205;241206	323507;323508;323509;323510;323511;323512;323513	323509			7	
NNNQQLAQLQK	1	Unmodified	1297.6739	0.67386184	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.551	22.036	2	6.5118E-05	19461	160511_QHF_FH_JSI12i_1	99.305	91.924			1.7129	1.7565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7129	1.7565	NaN	1	0	Median	70259000	32290000	37969000	0	0	0	0	0	0	0	0	0	70259000	32290000	37969000	39321	5507	36990	241207	323514	323514			0	
NNNSNQNFFK	1	Unmodified	1225.5476	0.54759869	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		1	3	23.395	22.534	2	1.5201E-06	18782	160511_QHF_FH_JSI12i_2	131.06	114.04			1.0761	1.055	38.564	5	4	Median	1.2666	1.055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8139	1.8051	NaN	1	0	Median	0.93488	1.0157	32.1	3	3	Median	295080000	153010000	142070000	35289000	14673000	20616000	0	0	0	66165000	23547000	42618000	193620000	114790000	78834000	39322	446	36991	241208;241209;241210;241211;241212	323515;323516;323517;323518;323519	323516			5	
NNNTDLMILK	1	Unmodified	1174.6016	0.6016081	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.262	52.594	2	7.1377E-05	47494	160511_QHF_FH_JSI11i_1	88.948	57.874			1.0894	1.1231	22.383	4	1	Median	1.0317	0.85396	NaN	1	0	Median	0.95302	1.1171	NaN	1	0	Median	1.1503	1.1291	NaN	1	0	Median	1.4235	1.4774	NaN	1	1	Median	825660000	412460000	413200000	195340000	90059000	105290000	213010000	125590000	87416000	223270000	112930000	110340000	194040000	83877000	110160000	39323	4272	36992	241213;241214;241215;241216	323520;323521;323522;323523;323524;323525	323521			5	
NNPAIVIIGNNGQIHYDHQNDGASQALASCQR	0	Unmodified	3474.6447	0.64471034	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	62.067	61.786	3	0.00015747	53320	160511_QHF_FH_JSI12i_3	41.434	39.265			2.9332	3.0212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9332	3.0212	NaN	1	1	Median	15065000	1392900	13673000	0	0	0	0	0	0	0	0	0	15065000	1392900	13673000	39324	1648	36993	241217	323526	323526			1	
NNPATPSTAMGSSVPYSTAK	1	Unmodified	1979.9259	0.92585536	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.002	44.515	2	6.0587E-16	40020	160511_QHF_FH_JSI10i_1	155.98	141.29			0.87176	1.0086	42.472	3	2	Median	NaN	NaN	NaN	0	0	Median	0.87176	1.0086	NaN	1	1	Median	1.5714	1.5423	NaN	1	0	Median	0.65128	0.65958	NaN	1	1	Median	96259000	49098000	47161000	0	0	0	27372000	15454000	11918000	41846000	16025000	25822000	27041000	17619000	9421600	39325	1443	36994	241218;241219;241220;241221	323527;323528;323529;323530;323531	323530			5	
NNPEPWNK	1	Unmodified	997.46174	0.4617438	143	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	1	3	22.642	20.724	2	0.0008738	17641	160511_QHF_FH_JSI9i_2	89.55	81.209			1.398	1.4523	22.893	6	1	Median	1.3857	1.1215	NaN	1	0	Median	1.5785	1.8374	NaN	1	0	Median	1.3755	1.3495	NaN	1	0	Median	1.7687	1.8838	25.699	3	1	Plateau	991390000	395100000	596280000	230480000	82244000	148230000	196950000	75880000	121070000	251210000	116380000	134840000	312750000	120600000	192140000	39326	143	36995	241222;241223;241224;241225;241226;241227;241228	323532;323533;323534;323535;323536;323537;323538;323539;323540;323541	323540			10	
NNPEPWNR	0	Unmodified	1025.4679	0.46789181	4970	Q9NRX3	NDUFA4L2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	22.312	21.137	2	0.015766	17500	160511_QHF_FH_JSI12i_2	48.756	39.239			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39327	4970	36996	241229	323542	323542			1	
NNPPTLVGDFTK	1	Unmodified	1301.6616	0.66156582	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	55.605	54.996	2	8.1236E-05	50189	160511_QHF_FH_JSI12i_1	93.258	73.481			0.78381	0.8057	15.073	5	2	Median	0.98359	0.8057	NaN	1	0	Median	0.71288	0.84635	NaN	1	0	Median	0.71988	0.69349	11.66	2	2	Median	0.91903	0.96078	NaN	1	0	Median	2527700000	1292000000	1235700000	451840000	185250000	266590000	459770000	255460000	204310000	1153300000	614290000	539020000	462760000	236960000	225790000	39328	5206	36997	241230;241231;241232;241233;241234	323543;323544;323545;323546;323547;323548;323549;323550	323545			8	
NNPSKPLHVIK	2	Acetyl (K)	1287.7299	0.72992016	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									3			3		41.768	32.171	2;3	6.9636E-05	17660	160513_QHF_FH_JSI11Kac_6	89.403	72.036			0.22834	0.21659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22834	0.21659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34335000	26767000	7568500	0	0	0	0	0	0	34335000	26767000	7568500	0	0	0	39329	472	36998	241235;241236;241237	323551;323552;323553	323551	241		3	
NNPVHLITEEDLK	1	Unmodified	1520.7835	0.78347187	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	54.179	52.802	2;3	0.0029341	45247	160511_QHF_FH_JSI12i_2	64.199	48.627			1.9334	2.1383	28.71	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9334	2.1383	28.71	2	2	Median	94601000	35796000	58805000	0	0	0	0	0	0	0	0	0	94601000	35796000	58805000	39330	615	36999	241238;241239	323554;323555	323555			2	
NNPVMSLQDQVR	0	Unmodified	1399.6878	0.68779734	3242	Q7LGA3	HS2ST1	Heparan sulfate 2-O-sulfotransferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	50.043	49.082	2	0.0019569	41976	160511_QHF_FH_JSI12i_2	71.349	61.917			1.1031	1.1813	1.0886	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1425	1.1905	NaN	1	1	Median	1.065	1.1723	NaN	1	0	Median	42324000	19839000	22484000	0	0	0	0	0	0	22517000	12644000	9873100	19806000	7195000	12611000	39331	3242	37000	241240;241241	323556;323557	323556			2	
NNQESDCVSK	1	Unmodified	1179.4826	0.48261518	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	12.5	0.5					1	1						1	1	6.1163	-1.1213	2	0.019362	1913	160513_QHF_FH_JSI12Kac_2	59.908	50.32			1.3295	1.3383	100.04	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69704	0.65969	NaN	1	0	Median	2.5357	2.7148	NaN	1	1	Median	5701300	2492300	3209000	0	0	0	0	0	0	2475900	1417800	1058000	3225400	1074500	2150900	39332	23	37001	241242;241243	323558;323559	323559			2	
NNQFNQDELALMEK	1	Unmodified	1692.7777	0.77773456	688	O95379	TNFAIP8	Tumor necrosis factor alpha-induced protein 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	63.772	62.978	2	5.1528E-05	57092	160511_QHF_FH_JSI11i_1	119.39	105.48			1.1056	1.0076	18.81	4	3	Median	1.2908	1.0513	28.97	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1617	1.1148	NaN	1	0	Median	0.87271	0.91077	NaN	1	1	Median	163490000	76874000	86621000	69746000	28113000	41633000	0	0	0	47733000	22219000	25514000	46016000	26542000	19473000	39333	688	37002	241244;241245;241246;241247	323560;323561;323562;323563;323564	323560			5	
NNQFQALLQYADPVNAHYAK	1	Unmodified	2304.1287	0.12872935	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	89.558	88.851	3	0.00018747	78761	160511_QHF_FH_JSI10i_2	60.062	51.418			1.0198	1.1754	20.552	2	2	Median	NaN	NaN	NaN	0	0	Median	1.117	1.3592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93104	1.0164	NaN	1	1	Median	92316000	44205000	48110000	0	0	0	54951000	27476000	27475000	0	0	0	37364000	16729000	20635000	39334	724	37003	241248;241249	323565;323566	323566			2	
NNQFQALLQYADPVSAQHAK	1	Unmodified	2242.1131	0.11307928	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.97	4.85	4	16	5						4	9	7	8	5	84.68	82.899	2;3;4	2.504E-26	74063	160511_QHF_FH_JSI11i_2	208.97	187.67			0.9367	0.99776	29.045	27	8	Median	1.1485	0.94689	29.276	8	5	Median	0.90101	1.0649	35.484	7	2	Median	1.0253	1.0339	28.06	7	1	Median	0.92942	0.99776	12.821	5	0	Median	7147600000	3654100000	3493500000	2037800000	1114400000	923390000	1638900000	798650000	840250000	1909900000	980490000	929450000	1561000000	760590000	800420000	39335	1281	37004	241250;241251;241252;241253;241254;241255;241256;241257;241258;241259;241260;241261;241262;241263;241264;241265;241266;241267;241268;241269;241270;241271;241272;241273;241274;241275;241276;241277;241278	323567;323568;323569;323570;323571;323572;323573;323574;323575;323576;323577;323578;323579;323580;323581;323582;323583;323584;323585;323586;323587;323588;323589;323590;323591;323592;323593;323594;323595;323596;323597;323598;323599;323600;323601;323602;323603;323604;323605;323606;323607;323608;323609;323610;323611;323612;323613;323614;323615;323616;323617;323618;323619	323607			52	
NNQGTVNWSVDDIVK	1	Unmodified	1687.8166	0.81656291	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	69.128	68.56	2	7.4227E-16	61983	160511_QHF_FH_JSI10i_1	168.82	145.9			1.0191	0.94465	14.537	4	0	Median	1.0279	0.8434	NaN	1	0	Median	0.69567	0.81142	NaN	1	0	Median	1.0917	1.0669	NaN	1	0	Median	1.0105	1.058	NaN	1	0	Median	782470000	413740000	368730000	138760000	72079000	66679000	239540000	134610000	104930000	206450000	97932000	108510000	197730000	109120000	88610000	39336	1766	37005	241279;241280;241281;241282;241283	323620;323621;323622;323623;323624;323625;323626;323627;323628;323629;323630;323631;323632;323633;323634	323627			15	
NNQIEQFSVK	1	Unmodified	1205.6041	0.60405094	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.9	37.459	2	0.0040256	33658	160511_QHF_FH_JSI11i_1	67.414	50.874			1.2914	1.3062	2.3359	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3124	1.2848	NaN	1	1	Median	1.2706	1.3279	NaN	1	1	Median	198460000	101990000	96477000	0	0	0	0	0	0	122060000	63526000	58534000	76405000	38461000	37944000	39337	3539	37006	241284;241285	323635;323636	323635			2	
NNQITNNQR	0	Unmodified	1100.5323	0.53228298	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.06	4	5	2		1	4	3	4		6	5	5	7	5.6585	1.1316	2	2.3958E-16	3071	160511_QHF_FH_JSI10i_1	174.69	142.08			0.98418	1.0121	16.991	21	4	Median	1.2624	1.1028	17.78	4	2	Median	0.82833	0.99504	14.698	5	0	Median	1.0174	1.0037	6.5878	5	0	Median	0.96155	1.0121	21.707	7	2	Median	41486000000	19845000000	21641000000	8947200000	4097500000	4849700000	11347000000	5468700000	5877900000	10630000000	4968700000	5661500000	10562000000	5310300000	5251500000	39338	775	37007	241286;241287;241288;241289;241290;241291;241292;241293;241294;241295;241296;241297;241298;241299;241300;241301;241302;241303;241304;241305;241306;241307;241308	323637;323638;323639;323640;323641;323642;323643;323644;323645;323646;323647;323648;323649;323650;323651;323652;323653;323654;323655;323656;323657;323658;323659;323660;323661;323662;323663;323664;323665;323666	323645			30	
NNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSK	3	Unmodified	4405.127	0.12695761	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.732	50.056	4	5.9009E-08	44979	160511_QHF_FH_JSI10i_1	43.831	42.492			0.9001	0.95915	19.259	4	0	Median	0.86509	0.71336	NaN	1	0	Median	0.8578	1.0084	NaN	1	0	Median	0.93652	0.91234	NaN	1	0	Median	1.0598	1.1187	NaN	1	0	Median	463240000	210390000	252850000	89439000	45198000	44241000	108070000	41502000	66573000	123630000	54177000	69453000	142100000	69513000	72587000	39339	5107	37008	241309;241310;241311;241312	323667;323668;323669;323670;323671;323672;323673;323674;323675;323676;323677	323674			11	
NNQSKFFR	1	Acetyl (K)	1081.5305	0.53049207	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	1	0	0	1			By MS/MS		16	0									1			1		40.291	30.747	2	0.040958	16943	160513_QHF_FH_JSI11Kac_6	51.346	41.359			0.37805	0.37096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37805	0.37096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6639500	4354800	2284700	0	0	0	0	0	0	6639500	4354800	2284700	0	0	0	39340	2578;2318	37009	241313	323678	323678			1	
NNQVLGIGSGSTIVHAVQR	0	Unmodified	1949.0443	0.044271436	1647	P49247	RPIA	Ribose-5-phosphate isomerase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			60.7	59.177	3	0.051166	49533	160511_QHF_FH_JSI10i_3	23.895	18.356			2.2618	2.6627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2618	2.6627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16890000	2526600	14364000	0	0	0	16890000	2526600	14364000	0	0	0	0	0	0	39341	1647	37010	241314	323679	323679			1	
NNRFSTPEQAAK	1	Unmodified	1361.6688	0.66877646	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			14.437	13.632	3	0.027849	10668	160511_QHF_FH_JSI9i_3	33.192	27.689			1.332	1.3235	5.6555	2	0	Median	1.7165	1.3775	NaN	1	0	Median	1.0336	1.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58658000	21501000	37157000	24657000	9161500	15495000	34001000	12339000	21662000	0	0	0	0	0	0	39342	1063	37011	241315;241316	323680;323681	323680			2	
NNRPSEGPLQTR	0	Unmodified	1367.6906	0.69057454	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	5.29	5.61		7	4						3	5	5	3	1	13.002	11.057	2;3	2.1575E-06	8900	160511_QHF_FH_JSI10i_3	127.83	97.144			0.84617	0.98024	34.429	14	2	Median	1.261	1.057	20.028	5	0	Median	0.83012	0.97321	7.2587	5	0	Median	0.3079	0.3053	62.663	3	2	Plateau	0.74434	0.80522	NaN	1	0	Median	3024800000	1530900000	1493900000	1382900000	580890000	802060000	1185200000	648570000	536610000	452920000	299190000	153730000	3781800	2275600	1506200	39343	2155	37012	241317;241318;241319;241320;241321;241322;241323;241324;241325;241326;241327;241328;241329;241330	323682;323683;323684;323685;323686;323687;323688;323689;323690;323691;323692;323693;323694;323695;323696	323684			15	
NNRQPYAVSELAGHQTSAESWGTGR	0	Unmodified	2715.275	0.27495267	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			51.893	50.313	3;4	1.3595E-14	41279	160511_QHF_FH_JSI9i_3	112.86	106.06			1.4032	1.1452	26.694	5	1	Median	1.4287	1.1781	3.4726	3	0	Median	0.67611	0.79775	31.029	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	296960000	149590000	147360000	250970000	117790000	133180000	45990000	31805000	14185000	0	0	0	0	0	0	39344	1457	37013	241331;241332;241333;241334;241335	323697;323698;323699;323700;323701	323699			5	
NNSELLNNLGNFINR	0	Unmodified	1730.87	0.86999547	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							4	2	3	4	87.692	87.208	2;3	6.3423E-68	75821	160511_QHF_FH_JSI12i_3	217.14	169.13			1.0863	1.129	28.1	13	5	Median	1.0837	0.92526	44.321	4	4	Median	1.1196	1.3685	18.419	2	1	Median	0.97503	0.92434	12.248	3	0	Median	1.1221	1.1906	20.424	4	0	Median	687040000	303230000	383810000	211030000	104840000	106190000	156550000	74920000	81633000	147360000	55480000	91875000	172100000	67984000	104120000	39345	1872	37014	241336;241337;241338;241339;241340;241341;241342;241343;241344;241345;241346;241347;241348	323702;323703;323704;323705;323706;323707;323708;323709;323710;323711;323712;323713;323714;323715;323716;323717;323718	323718			15	
NNSGEEFDCAFR	0	Unmodified	1444.5677	0.56774179	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.743	40.106	2	6.6883E-11	36145	160511_QHF_FH_JSI11i_1	148.56	148.56			0.92904	0.84004	26.189	4	0	Median	1.0749	0.86089	NaN	1	0	Median	0.70077	0.81969	NaN	1	0	Median	0.80298	0.77199	NaN	1	0	Median	1.3118	1.3684	NaN	1	0	Median	351990000	175270000	176720000	41110000	21971000	19139000	92144000	52008000	40136000	108660000	59436000	49221000	110080000	41857000	68220000	39346	2282	37015	241349;241350;241351;241352	323719;323720;323721;323722	323719			4	
NNSLYVLTPDLPPPSSSSHAGALQESLNQNFMLIITHR	0	Unmodified	4161.0953	0.095327314	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	94.24	84.798	4	2.4312E-07	45992	160513_QHF_FH_JSI12Kac_6	62.434	53.959			0.91126	0.97462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91126	0.97462	NaN	1	0	Median	55609000	29694000	25915000	0	0	0	0	0	0	0	0	0	55609000	29694000	25915000	39347	5442	37016	241353	323723	323723			1	
NNSNDIVNAIMELTM	0	Unmodified	1677.7702	0.77020634	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	103.34	103.25	2	2.728E-16	91349	160511_QHF_FH_JSI9i_1	169.21	169.21			0.99444	1.0639	14.355	8	0	Median	1.4822	1.2318	12.58	2	0	Median	0.90809	1.0801	10.264	2	0	Median	1.1482	1.1254	16.811	2	0	Median	0.86165	0.92077	2.9371	2	0	Median	1237600000	597860000	639760000	257300000	93998000	163300000	394980000	216420000	178560000	259900000	115330000	144570000	325450000	172110000	153330000	39348	87	37017	241354;241355;241356;241357;241358;241359;241360;241361	323724;323725;323726;323727;323728;323729;323730;323731;323732;323733;323734	323731			11	
NNSNDIVNAIMELTM	0	Oxidation (M)	1693.7651	0.76512097	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	102.71	102.64	2	1.5204E-20	93361	160511_QHF_FH_JSI11i_1	131.83	122.87			1.0041	1.0278	2.1732	3	2	Median	NaN	NaN	NaN	0	0	Median	0.86076	1.0081	NaN	1	1	Median	1.1317	1.0528	NaN	1	1	Median	1.0041	1.0278	NaN	1	0	Median	181040000	100650000	80394000	0	0	0	72694000	43263000	29432000	50276000	25658000	24618000	58073000	31728000	26345000	39349	87	37017	241362;241363;241364;241365;241366;241367	323735;323736;323737;323738;323739;323740;323741	323736		41	7	
NNSSNSNVSKK	2	Acetyl (K)	1219.5793	0.57929275	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	5.9215	-1.3458	2	0.028714	2009	160513_QHF_FH_JSI10Kac_3	58.37	45.017			0.93738	0.96433	43.25	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3497	1.3093	NaN	1	0	Median	0.65103	0.71025	NaN	1	0	Median	6262800	3598100	2664700	0	0	0	664890	664890	0	2855200	1408200	1447000	2742800	1525000	1217800	39350	457	37018	241368;241369;241370	323742;323743;323744;323745	323745			4	
NNTALQSVSLR	0	Unmodified	1201.6415	0.64149908	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	38.724	37.69	2	9.8515E-06	32154	160511_QHF_FH_JSI11i_2	108.43	75.539			1.1015	1.004	37.729	5	2	Median	1.1508	1.004	NaN	1	0	Median	0.70507	0.85261	NaN	1	0	Median	1.1015	1.0991	NaN	1	0	Median	0.89551	0.96557	73.213	2	2	Median	232030000	115220000	116810000	33606000	16609000	16997000	43168000	23920000	19249000	66364000	28295000	38069000	88889000	46392000	42497000	39351	3915	37019	241371;241372;241373;241374;241375	323746;323747;323748;323749;323750;323751;323752;323753;323754	323751			9	
NNTLMGKPTEGALIALAMK	2	Unmodified	1972.0486	0.048553457	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	83.515	83.324	3	0.0007613	72476	160511_QHF_FH_JSI12i_3	57.745	47.957			0.37495	0.39632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37495	0.39632	NaN	1	1	Median	58252000	41735000	16517000	0	0	0	0	0	0	0	0	0	58252000	41735000	16517000	39352	2142	37020	241376;241377	323755;323756	323756			2	
NNTQVLINCR	0	Unmodified	1230.6139	0.61390412	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.81		5					3			2	2	2	2	30.426	25.901	2	8.8961E-10	21807	160511_QHF_FH_JSI12i_2	137.14	121.47			0.80698	0.94871	31.631	7	2	Median	0.72964	0.62493	NaN	1	1	Median	0.73135	0.87505	11.43	2	1	Median	0.70663	0.69642	45.234	2	0	Median	1.089	1.1724	0.94259	2	0	Median	311750000	174870000	136880000	38919000	23885000	15034000	64258000	38385000	25873000	165420000	91009000	74408000	43157000	21596000	21561000	39353	2002	37021	241378;241379;241380;241381;241382;241383;241384;241385	323757;323758;323759;323760;323761;323762;323763;323764;323765;323766;323767;323768;323769	323758			13	
NNTVGLIQLNRPK	1	Unmodified	1465.8365	0.83651049	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.38		6	9					1	3	5	5	5	4	47.021	44.213	2;3	9.2174E-30	38427	160511_QHF_FH_JSI9i_2	188.28	172.69			1.0465	0.8878	15.421	17	3	Median	1.116	0.90976	14.411	5	0	Median	0.73393	0.87949	9.2292	4	0	Median	1.167	1.1133	13.072	5	1	Median	0.87679	0.88474	8.5238	3	2	Plateau	3063400000	1443000000	1620400000	1471000000	618140000	852840000	1013700000	591820000	421890000	451400000	182750000	268650000	127320000	50257000	77059000	39354	1341	37022	241386;241387;241388;241389;241390;241391;241392;241393;241394;241395;241396;241397;241398;241399;241400;241401;241402;241403;241404	323770;323771;323772;323773;323774;323775;323776;323777;323778;323779;323780;323781;323782;323783;323784;323785;323786;323787;323788;323789;323790;323791;323792;323793;323794;323795;323796;323797	323785			27	
NNTVTPGGK	1	Unmodified	886.45084	0.45084476	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.7	6		1							2	2	2	1	6.3022	5.9385	2	0.00088814	3962	160511_QHF_FH_JSI12i_1	72.23	29.316			0.8745	0.99526	18.03	5	3	Median	1.3796	1.1315	18.15	2	1	Median	0.87408	1.0555	NaN	1	1	Median	0.8745	0.8535	NaN	1	1	Median	0.77353	0.8205	NaN	1	0	Median	2292300000	1265700000	1026600000	569680000	266110000	303570000	621840000	366350000	255490000	468060000	287200000	180850000	632740000	346010000	286730000	39355	1135	37023	241405;241406;241407;241408;241409;241410;241411	323798;323799;323800;323801;323802;323803;323804;323805	323801			8	
NNTVTPGGKPNK	2	Unmodified	1225.6415	0.64149908	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.96	7	8	7				5	6		6	8	9	10	7.2474	4.0274	2;3	8.991E-31	4292	160511_QHF_FH_JSI12i_1	192.92	178.71			0.89137	0.95881	19.612	33	0	Median	1.482	1.2283	12.473	6	0	Median	0.8269	0.99394	10.567	8	0	Median	0.92069	0.90182	18.056	9	0	Median	0.72306	0.78933	16.972	10	0	Median	27753000000	13597000000	14156000000	3384200000	1370900000	2013300000	4327100000	2376200000	1950900000	9147700000	3818600000	5329000000	10894000000	6031700000	4862500000	39356	1135	37024	241412;241413;241414;241415;241416;241417;241418;241419;241420;241421;241422;241423;241424;241425;241426;241427;241428;241429;241430;241431;241432;241433;241434;241435;241436;241437;241438;241439;241440;241441;241442;241443;241444	323806;323807;323808;323809;323810;323811;323812;323813;323814;323815;323816;323817;323818;323819;323820;323821;323822;323823;323824;323825;323826;323827;323828;323829;323830;323831;323832;323833;323834;323835;323836;323837;323838;323839;323840;323841;323842;323843;323844;323845;323846;323847;323848;323849;323850;323851;323852;323853;323854;323855;323856	323818			51	
NNVAFMSYFLQGK	1	Unmodified	1517.7337	0.7336849	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.98	1	4	1						5	2	3	3	3	91.773	87.306	2	8.3661E-51	43740	160513_QHF_FH_JSI9Kac_6	211.64	194.99			0.85727	0.92334	17.133	10	2	Median	1.1041	0.94678	10.658	2	0	Median	0.81236	0.97165	20.229	3	0	Plateau	1.0078	0.99396	19.075	2	0	Median	0.7858	0.90593	22.685	3	2	Median	2727400000	1402200000	1325200000	530670000	272670000	258000000	735950000	404340000	331610000	696040000	322930000	373110000	764690000	402200000	362490000	39357	1438	37025	241445;241446;241447;241448;241449;241450;241451;241452;241453;241454;241455	323857;323858;323859;323860;323861;323862;323863;323864;323865;323866;323867;323868;323869;323870;323871;323872;323873;323874;323875;323876	323871			20	
NNVAFMSYFLQGK	1	Oxidation (M)	1533.7286	0.72859953	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	2	1	2	2	77.276	67.675	2	9.5217E-17	36881	160513_QHF_FH_JSI11Kac_6	141.88	127.46			1.141	1.1066	61.92	6	3	Median	2.2612	1.8823	96.429	2	1	Median	0.82515	0.99744	NaN	1	0	Median	1.5466	1.5143	82.482	2	1	Median	1.1103	1.2276	NaN	1	1	Median	80819000	28223000	52596000	29327000	4388100	24939000	2435100	1606800	828240	35099000	14796000	20303000	13958000	7432200	6525900	39358	1438	37025	241456;241457;241458;241459;241460;241461;241462	323877;323878;323879;323880;323881;323882;323883;323884;323885	323879		1115	9	
NNVLVLYSK	1	Unmodified	1048.5917	0.59169534	2542	Q14554	PDIA5	Protein disulfide-isomerase A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		14.6	0.49							2	3		1	2	2		59.938	49.154	2	0.0070127	26925	160513_QHF_FH_JSI11Kac_5	61.78	53.247			1.4749	1.7564	29.534	5	3	Median	2.1813	1.8465	NaN	1	1	Median	1.4833	1.7729	1.3242	2	2	Median	1.0722	1.0527	6.6051	2	0	Median	NaN	NaN	NaN	0	0	Median	42079000	19505000	22574000	7210400	3143100	4067400	13831000	5793500	8037900	21037000	10568000	10469000	0	0	0	39359	2542	37026	241463;241464;241465;241466;241467	323886;323887;323888;323889;323890;323891;323892	323891			7	
NNVNVASLTQSEIR	0	Unmodified	1543.7954	0.79543354	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	53.708	53.175	2	0.00026808	47900	160511_QHF_FH_JSI10i_1	83.617	67.728			0.5917	0.65177	10.508	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61835	0.70204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5662	0.60509	NaN	1	0	Median	54187000	36275000	17912000	0	0	0	31562000	21514000	10048000	0	0	0	22625000	14761000	7864100	39360	3101	37027	241468;241469	323893	323893			1	
NNVVINYK	1	Unmodified	962.51853	0.5185304	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	27.658	27.315	2	0.014418	24106	160511_QHF_FH_JSI11i_1	60.76	42.724			2.8603	3.0801	70.28	4	4	Median	NaN	NaN	NaN	0	0	Median	1.3663	1.6057	97.818	2	2	Median	3.0576	2.9586	NaN	1	1	Median	3.5267	3.6105	NaN	1	1	Median	251630000	80844000	170780000	0	0	0	163920000	61286000	102630000	61013000	16042000	44971000	26695000	3515300	23180000	39361	3101	37028	241470;241471;241472;241473	323894;323895;323896;323897	323894			4	
NNVVITVTQR	0	Unmodified	1142.6408	0.6407708	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	5.02		1					2	2			2	2	1	44.121	33.971	2	0.0049695	20389	160513_QHF_FH_JSI11Kac_4	72.325	45.071			1.0407	1.1347	13.201	4	0	Median	NaN	NaN	NaN	0	0	Median	0.88206	1.0531	7.0661	2	0	Median	1.291	1.2642	11.789	2	0	Median	NaN	NaN	NaN	0	0	Median	21036000	11173000	9862700	0	0	0	8605100	4668900	3936200	12431000	6504000	5926500	0	0	0	39362	3173	37029	241474;241475;241476;241477;241478	323898;323899;323900	323899			3	
NNWEVSALSR	0	Unmodified	1174.5731	0.57308516	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.6	1							4		1	2	1	1	55.024	46.393	2	0.0037107	25467	160513_QHF_FH_JSI11Kac_5	77.662	59.843			1.1343	1.0082	33.786	5	1	Median	1.1343	0.94351	NaN	1	0	Median	1.1809	1.3891	56.86	2	1	Median	1.0275	1.0082	NaN	1	0	Median	1.1682	1.2697	NaN	1	0	Median	150170000	51854000	98316000	3369300	1833800	1535500	137920000	46399000	91517000	6038300	2502400	3535900	2846300	1118600	1727700	39363	2094	37030	241479;241480;241481;241482;241483	323901;323902;323903	323903			3	
NNWTGEFSAR	0	Unmodified	1180.5261	0.52613497	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.678	39.717	2	0.00074073	34057	160511_QHF_FH_JSI11i_2	70.056	60.842			1.1053	1.1171	10.268	4	0	Median	1.348	1.1626	NaN	1	0	Median	0.82238	0.9999	NaN	1	0	Median	1.2243	1.2688	NaN	1	0	Median	0.99791	1.0734	NaN	1	0	Median	165090000	70742000	94345000	19748000	8754700	10993000	36507000	15702000	20805000	76756000	31302000	45453000	32076000	14983000	17093000	39364	5110	37031	241484;241485;241486;241487	323904;323905;323906;323907;323908	323907			4	
NNYDEEIISLK	1	Unmodified	1336.6511	0.65106071	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.471	57.822	2	0.00036328	52503	160511_QHF_FH_JSI12i_1	73.499	63.495			1.1625	1.1715	15.013	4	3	Median	1.1506	0.94451	NaN	1	1	Median	1.0057	1.203	NaN	1	1	Median	1.1746	1.1409	NaN	1	1	Median	1.3332	1.3545	NaN	1	0	Median	314910000	143180000	171720000	75085000	36009000	39075000	77443000	36621000	40821000	75135000	35785000	39350000	87243000	34765000	52479000	39365	1085	37032	241488;241489;241490;241491	323909;323910;323911;323912;323913	323910			5	
NNYENYIDIVK	1	Unmodified	1383.667	0.66704513	2930	Q5SY16	NOL9	Polynucleotide 5'-hydroxyl-kinase NOL9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.496	64.881	2	0.0011668	59083	160511_QHF_FH_JSI12i_1	65.627	57.094			0.77326	0.83238	19.026	4	1	Median	1.2899	1.0835	NaN	1	1	Median	0.79002	0.93376	NaN	1	0	Median	0.75686	0.73038	NaN	1	0	Median	0.71293	0.742	NaN	1	0	Median	227350000	113290000	114060000	37970000	17695000	20275000	73643000	40203000	33440000	52044000	22339000	29705000	63692000	33049000	30643000	39366	2930	37033	241492;241493;241494;241495	323914;323915;323916;323917	323915			4	
NPAAYENDK	1	Unmodified	1020.4512	0.45123869	222	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	9.8134	9.5688	2	0.0022187	7358	160511_QHF_FH_JSI11i_1	66.568	58.035			1.9164	2.3231	31.007	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.9164	2.3231	NaN	1	1	Median	1.2705	1.2497	NaN	1	1	Median	1.5954	1.6876	NaN	1	1	Median	725250000	381590000	343660000	0	0	0	273030000	136390000	136640000	241930000	139860000	102070000	210290000	105350000	104950000	39367	222	37034	241496;241497;241498;241499;241500	323918;323919;323920;323921;323922;323923;323924	323919			7	
NPADLPK	1	Unmodified	753.4021	0.40210366	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		13	0						2				1		1		12.314	-0.25006	2	0.036493	5577	160513_QHF_FH_JSI9Kac_3	58.716	35.193			1.1068	1.0085	1.4268	2	0	Median	1.1671	0.99833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0496	1.0187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	425540000	197910000	227640000	415900000	193400000	222500000	0	0	0	9640900	4501600	5139300	0	0	0	39368	1033	37035	241501;241502	323925	323925			1	
NPAKYYTLFGR	1	Acetyl (K)	1370.6983	0.69828568	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.297	67.979	2	0.0013749	37065	160513_QHF_FH_JSI11Kac_6	83.862	62.49			0.29155	0.28998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29155	0.28998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34465000	31207000	3257500	0	0	0	0	0	0	34465000	31207000	3257500	0	0	0	39369	878	37036	241503	323926	323926	591		1	
NPALEAFLAQFSQLEDK	1	Unmodified	1919.9629	0.9628928	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.35	102.21	2;3	2.5549E-10	90042	160511_QHF_FH_JSI11i_2	161.04	129.4			3.532	3.7326	9.6531	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0231	3.9963	NaN	1	1	Median	3.1009	3.4864	NaN	1	1	Median	106340000	23012000	83329000	0	0	0	0	0	0	56368000	10272000	46096000	49972000	12739000	37233000	39370	3660	37037	241504;241505	323927;323928;323929	323929			3	
NPALKAQSGPVR	1	Acetyl (K)	1278.7044	0.70443369	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				2	1	1	37.019	27.465	2	0.00034532	16961	160513_QHF_FH_JSI11Kac_4	91.752	75.212			0.38512	0.41142	407.89	2	2	Median	NaN	NaN	NaN	0	0	Median	6.3199	7.36	NaN	1	1	Median	0.023469	0.022999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17244000	15542000	1701600	0	0	0	3275800	1760300	1515500	12488000	12302000	186100	1479900	1479900	0	39371	2169	37038	241506;241507;241508;241509	323930;323931;323932;323933	323932	2288		4	
NPAMMQEMMR	0	Unmodified	1237.5076	0.50758983	5299;5427;4964	Q9UHD9;Q9UMX0;Q9NRR5	UBQLN2;UBQLN1;UBQLN4	Ubiquilin-2;Ubiquilin-1;Ubiquilin-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	2	3	2	50.217	49.315	2	8.8104E-06	41770	160511_QHF_FH_JSI12i_2	115.71	103.48			0.049381	0.055148	64.9	5	5	Median	0.034721	0.029406	NaN	1	1	Median	0.053769	0.065415	NaN	1	1	Median	0.076326	0.074314	104.22	2	2	Median	0.049381	0.055148	NaN	1	1	Median	785230000	482220000	303010000	71287000	68114000	3172900	187490000	110820000	76679000	309340000	186090000	123250000	217110000	117200000	99909000	39372	5299;5427;4964	37039	241510;241511;241512;241513;241514;241515;241516;241517	323934;323935;323936;323937;323938;323939;323940;323941	323935			8	
NPAPPIDAVEQILPTLVR	0	Unmodified	1942.0888	0.088762013	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	1	1	3	102.06	101.95	2;3	3.2434E-08	92754	160511_QHF_FH_JSI10i_1	128.96	94.912			1.0932	1.0882	14.636	6	2	Median	1.1265	0.96682	5.5185	2	1	Median	0.83186	0.97949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0938	1.1905	8.1905	3	1	Median	1211400000	579380000	632060000	396100000	182910000	213190000	193280000	108220000	85061000	0	0	0	622060000	288260000	333810000	39373	1766	37040	241518;241519;241520;241521;241522;241523;241524	323942;323943;323944;323945;323946;323947	323944			6	
NPASPYNLAYK	1	Unmodified	1236.6139	0.61388734	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.237	40.861	2	0.0078645	34946	160511_QHF_FH_JSI12i_2	51.268	35.065			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39374	564	37041	241525	323948	323948			1	
NPATTNQTEFER	0	Unmodified	1406.6426	0.64262129	1717	P50750	CDK9	Cyclin-dependent kinase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.95	19.444	2	0.00017371	16499	160511_QHF_FH_JSI9i_1	82.171	74.128			1.2881	0.94187	20.193	4	2	Linear	1.2765	1.0225	NaN	1	0	Median	0.76056	0.86762	NaN	1	1	Median	0.88274	0.84614	NaN	1	1	Median	1.2595	1.3122	NaN	1	0	Median	151110000	79377000	71733000	39825000	18388000	21438000	35421000	20208000	15214000	37215000	22202000	15013000	38649000	18580000	20069000	39375	1717	37042	241526;241527;241528;241529	323949;323950;323951;323952	323952			4	
NPAVLSAASFDGR	0	Unmodified	1303.6521	0.65206377	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.599	7	8	1							5	3	4	4	53.685	52.814	2	9.4188E-06	47048	160511_QHF_FH_JSI9i_1	86.313	71.646			2.447	2.1356	179.82	15	15	Median	2.6074	2.1496	146.45	4	4	Median	0.15863	0.18933	231.16	3	3	Plateau	0.80985	0.78756	241.77	4	4	Median	0.63418	0.70718	179.94	4	4	Median	1920700000	1009300000	911380000	306270000	124520000	181750000	382380000	253520000	128860000	672840000	325320000	347520000	559190000	305950000	253250000	39376	636	37043	241530;241531;241532;241533;241534;241535;241536;241537;241538;241539;241540;241541;241542;241543;241544;241545	323953;323954;323955;323956;323957;323958;323959;323960;323961;323962;323963;323964;323965;323966;323967;323968	323962			16	
NPAVQAGSIVVLQGGEETQR	0	Unmodified	2052.06	0.05998108	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	3	1	61.116	60.476	2;3	3.8233E-33	54646	160511_QHF_FH_JSI10i_1	154.6	140.63			1.0376	1.0387	2.3288	4	0	Median	1.2626	1.0505	NaN	1	0	Median	0.82638	1.0024	NaN	1	0	Median	1.0608	1.027	NaN	1	0	Median	1.0149	1.054	NaN	1	0	Median	224590000	105880000	118710000	45127000	20667000	24460000	65479000	28938000	36540000	60765000	32759000	28006000	53215000	23516000	29699000	39377	1022	37044	241546;241547;241548;241549;241550;241551;241552;241553;241554	323969;323970;323971;323972;323973;323974;323975;323976;323977	323973			5	
NPDDITNEEYGEFYK	1	Unmodified	1832.7741	0.77408897	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.62	15	4	2			5				7	7	7	5	61.532	58.908	2;3	1.2854E-51	53169	160511_QHF_FH_JSI11i_1	251.3	244.77			0.83042	0.85167	61.162	23	9	Median	0.8468	0.69907	53.77	6	2	Median	0.71757	0.85826	58.585	7	2	Median	0.86416	0.84215	59.753	6	3	Median	1.0254	1.0901	96.107	4	2	Median	18690000000	9202900000	9487000000	4599000000	2156100000	2443000000	4408000000	2535800000	1872200000	5950400000	2534700000	3415700000	3732500000	1976400000	1756100000	39378	880	37045	241555;241556;241557;241558;241559;241560;241561;241562;241563;241564;241565;241566;241567;241568;241569;241570;241571;241572;241573;241574;241575;241576;241577;241578;241579;241580	323978;323979;323980;323981;323982;323983;323984;323985;323986;323987;323988;323989;323990;323991;323992;323993;323994;323995;323996;323997;323998;323999;324000;324001;324002;324003;324004;324005;324006;324007;324008;324009;324010;324011;324012;324013;324014;324015;324016;324017;324018;324019;324020;324021;324022;324023;324024;324025;324026;324027;324028;324029	323980			52	
NPDDITQEEYGEFYK	1	Unmodified	1846.7897	0.78973904	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.84	4.55	13	2	5		1	4				8	5	5	7	62.743	59.954	2;3	1.2514E-80	54362	160511_QHF_FH_JSI11i_1	242.48	226.19			0.99319	1.0035	45.472	21	7	Median	1.1464	1.0035	23.486	5	2	Median	0.88936	1.0009	47.831	5	1	Median	0.99319	0.97767	7.9185	5	2	Median	0.99419	1.0779	70.544	6	2	Median	26642000000	13923000000	12719000000	5641900000	2766000000	2876000000	6457300000	3711700000	2745600000	7174000000	3682000000	3492000000	7368500000	3763400000	3605100000	39379	898	37046	241581;241582;241583;241584;241585;241586;241587;241588;241589;241590;241591;241592;241593;241594;241595;241596;241597;241598;241599;241600;241601;241602;241603;241604;241605	324030;324031;324032;324033;324034;324035;324036;324037;324038;324039;324040;324041;324042;324043;324044;324045;324046;324047;324048;324049;324050;324051;324052;324053;324054;324055;324056;324057;324058;324059;324060;324061;324062;324063;324064;324065;324066;324067;324068;324069;324070;324071;324072;324073;324074;324075;324076;324077;324078;324079;324080;324081;324082;324083;324084;324085;324086;324087	324034			58	
NPDEEDNTFYQR	0	Unmodified	1526.6274	0.62736516	4391	Q9BS40	LXN	Latexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.313	26.733	2	4.5556E-05	23721	160511_QHF_FH_JSI11i_1	100.48	86.27			1.0995	1.395	17.43	4	0	Linear	1.0464	0.89175	NaN	1	0	Median	1.1553	1.3452	NaN	1	0	Median	1.217	1.1588	NaN	1	0	Median	1.01	1.0326	NaN	1	0	Median	153290000	75296000	77995000	31562000	14486000	17076000	50697000	29465000	21232000	38115000	15746000	22370000	32917000	15599000	17318000	39380	4391	37047	241606;241607;241608;241609	324088;324089;324090;324091;324092	324089			5	
NPDGTMNLMNWECAIPGK	1	Unmodified	2046.8962	0.89615192	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	91.741	91.378	2;3	1.1767E-06	83027	160511_QHF_FH_JSI11i_1	130.24	118.26			0.96417	0.97583	28.459	8	1	Median	1.1809	0.96448	NaN	1	0	Median	0.90009	1.0505	13.894	2	0	Median	0.91021	0.87838	2.1378	2	0	Median	0.9812	1.0436	32.56	3	1	Plateau	355620000	170800000	184820000	17368000	6401300	10967000	92743000	47841000	44902000	118790000	68600000	50187000	126730000	47962000	78764000	39381	2063	37048	241610;241611;241612;241613;241614;241615;241616;241617	324093;324094;324095;324096;324097;324098;324099;324100;324101;324102;324103;324104;324105	324093			13	
NPDGTMNLMNWECAIPGKK	2	Unmodified	2174.9911	0.99111493	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		81.421	80.801	3	0.0050119	70974	160511_QHF_FH_JSI11i_2	44.089	39.472			1.3198	1.3107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3198	1.3107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80599000	37074000	43525000	0	0	0	0	0	0	80599000	37074000	43525000	0	0	0	39382	2063	37049	241618	324106	324106			1	
NPDMVAGEK	1	Unmodified	959.43823	0.43823117	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	14.5	14.061	2	0.014604	11408	160511_QHF_FH_JSI11i_1	45.161	34.747			0.2803	0.27104	134.86	5	2	Median	0.2803	0.22397	NaN	1	0	Median	0.23174	0.27104	NaN	1	1	Median	0.36877	0.35811	NaN	1	0	Median	1.1398	1.2174	213.55	2	1	Median	1487600000	1085900000	401710000	249940000	223100000	26835000	387610000	284280000	103330000	291500000	253350000	38147000	558560000	325150000	233400000	39383	1169	37050	241619;241620;241621;241622;241623	324107;324108;324109;324110;324111	324107			5	
NPDQVYLVDYGLAYR	0	Unmodified	1784.8733	0.87334951	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	80.207	79.775	2;3	2.9106E-05	72621	160511_QHF_FH_JSI11i_1	82.543	67.853			0.80708	0.81977	20.386	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95936	0.94688	NaN	1	1	Median	0.67898	0.70972	NaN	1	1	Median	34548000	16598000	17950000	0	0	0	0	0	0	26585000	11193000	15392000	7963000	5404900	2558000	39384	4334	37051	241624;241625;241626;241627	324112;324113;324114;324115;324116	324113			5	
NPDSITNQIALLEAR	0	Unmodified	1653.8686	0.86859848	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		79.298	78.843	2;3	0.00051633	71846	160511_QHF_FH_JSI11i_1	52.372	44.588			0.67363	0.7885	35.232	3	3	Median	1.1295	0.91975	NaN	1	1	Median	0.67363	0.7885	NaN	1	1	Median	0.48364	0.46948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88068000	51605000	36463000	13734000	5102700	8631700	57847000	34272000	23574000	16487000	12230000	4256400	0	0	0	39385	4989	37052	241628;241629;241630	324117;324118;324119	324117			3	
NPDSQYGELIEK	1	Unmodified	1391.6569	0.65687437	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	1	3	3	46.332	43.197	2	0.00020419	38993	160511_QHF_FH_JSI12i_1	80.245	57.603			1.0561	1.0161	113.63	7	3	Median	2.5053	2.0006	NaN	1	1	Median	2.054	2.3905	NaN	1	1	Median	0.85273	0.8169	30.862	2	0	Median	0.71678	0.78657	169.22	3	1	Median	1616300000	847660000	768600000	249000000	95328000	153670000	373570000	167270000	206310000	336380000	188170000	148200000	657310000	396900000	260420000	39386	1342	37053	241631;241632;241633;241634;241635;241636;241637;241638	324120;324121;324122;324123;324124;324125;324126	324121			7	
NPDTQWITK	1	Unmodified	1101.5455	0.54547343	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2			1	2	1	1	43.423	36.366	2	0.0019789	33141	160511_QHF_FH_JSI12i_1	66.692	56.705			1.122	1.2018	9.5547	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82569	0.99903	NaN	1	0	Median	1.0689	1.0503	NaN	1	0	Median	1.122	1.2018	NaN	1	0	Median	427660000	222780000	204880000	0	0	0	4782500	2781300	2001200	13011000	6842000	6168900	409860000	213150000	196710000	39387	1951	37054	241639;241640;241641;241642;241643	324127;324128;324129;324130;324131;324132;324133	324128			7	
NPDTQWITKPVHK	2	Unmodified	1562.8205	0.82052608	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	0.361		2	11							1	2	4	6	34.495	34.163	2;3;4	2.4948E-05	29698	160511_QHF_FH_JSI11i_3	89.629	70.571			0.7885	0.78351	69.147	12	6	Median	0.91218	0.7814	NaN	1	1	Median	0.52961	0.63198	35.388	2	1	Median	0.94831	0.89402	28.631	4	2	Median	0.75687	0.78564	98.282	5	2	Median	2173500000	901710000	1271800000	37891000	18448000	19443000	96742000	52636000	44105000	679160000	307940000	371210000	1359700000	522680000	837070000	39388	1951	37055	241644;241645;241646;241647;241648;241649;241650;241651;241652;241653;241654;241655;241656	324134;324135;324136;324137;324138;324139;324140;324141;324142;324143;324144;324145;324146;324147;324148;324149;324150	324135			17	
NPDTQWITKPVHK	2	Acetyl (K)	1604.8311	0.83109076	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	14.7	0.471							2	4			2	3	1	60.567	49.749	2;3	0.00019738	28345	160513_QHF_FH_JSI11Kac_4	80.96	69.268			0.29918	0.29178	126.67	5	1	Median	NaN	NaN	NaN	0	0	Median	1.4309	1.6832	15.726	2	0	Median	0.25741	0.2523	20.556	2	0	Median	0.094303	0.10209	NaN	1	1	Median	75019000	54570000	20449000	0	0	0	15448000	6247400	9200300	55754000	44635000	11119000	3817700	3688000	129770	39389	1951	37055	241657;241658;241659;241660;241661;241662	324151;324152;324153;324154;324155;324156	324151	1967		6	
NPEFTSGLAIASYR	0	Unmodified	1524.7573	0.75725712	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.305	67.006	2	0.0041824	57624	160511_QHF_FH_JSI12i_2	63.537	38.682			1.6372	1.7822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6372	1.7822	NaN	1	1	Median	25164000	9915000	15249000	0	0	0	0	0	0	0	0	0	25164000	9915000	15249000	39390	941	37056	241663	324157	324157			1	
NPEILAIAPVLLDALTDPSRK	1	Unmodified	2245.2682	0.26818294	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	102.96	102.88	3	7.6889E-08	91384	160511_QHF_FH_JSI10i_2	90.534	81.533			0.60289	0.65651	63.222	6	4	Median	0.6123	0.53766	NaN	1	0	Median	0.59362	0.73281	NaN	1	0	Median	0.8315	0.83643	54.647	3	3	Plateau	2.0449	2.3047	NaN	1	1	Median	320630000	155180000	165450000	17136000	9480200	7655800	47403000	30405000	16998000	164730000	87501000	77232000	91357000	27793000	63564000	39391	3860	37057	241664;241665;241666;241667;241668;241669	324158;324159;324160;324161;324162;324163	324162			6	
NPEISHLLNNPDIMR	0	Unmodified	1761.8832	0.88320269	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										3	1	68.448	67.683	2;3	0.00012091	59175	160511_QHF_FH_JSI11i_2	98.337	84.431			1.0945	1.1363	68.443	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0268	1.0154	82.557	3	2	Median	1.1667	1.2717	NaN	1	1	Median	296640000	156980000	139650000	0	0	0	0	0	0	240580000	123650000	116930000	56058000	33333000	22725000	39392	5299	37058	241670;241671;241672;241673	324164;324165;324166;324167;324168	324166			5	
NPEISHMLNNPDIMR	0	Unmodified	1779.8396	0.83962331	5427	Q9UMX0	UBQLN1	Ubiquilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		15								4	3	4	4	61.715	60.801	2;3	7.0279E-08	52951	160511_QHF_FH_JSI11i_2	175.6	157.87			0.63303	0.60413	85.303	15	15	Median	1.0841	0.92286	89.614	4	4	Median	0.21397	0.25996	106.28	3	3	Plateau	0.94653	0.95455	82.803	4	4	Median	1.0037	1.1134	93.672	4	4	Median	2532400000	1382200000	1150200000	534390000	275770000	258610000	408620000	305650000	102980000	1094500000	586560000	507970000	494860000	214230000	280640000	39393	5427	37059	241674;241675;241676;241677;241678;241679;241680;241681;241682;241683;241684;241685;241686;241687;241688	324169;324170;324171;324172;324173;324174;324175;324176;324177;324178;324179;324180;324181;324182;324183	324180			15	
NPEISHMLNNPELMR	0	Unmodified	1793.8553	0.85527338	4964	Q9NRR5	UBQLN4	Ubiquilin-4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	62.424	61.512	2	5.7252E-05	52822	160511_QHF_FH_JSI12i_2	116.01	99.757			2.5178	2.5433	80.525	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.877	1.8369	46.021	2	2	Median	0.46365	0.51288	NaN	1	1	Median	59785000	21821000	37964000	0	0	0	0	0	0	42958000	15258000	27699000	16828000	6562600	10265000	39394	4964	37060	241689;241690;241691;241692	324184;324185;324186;324187	324184			4	
NPELPNAAQAQK	1	Unmodified	1279.6521	0.65206377	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.167	25.596	2	6.8575E-05	22655	160511_QHF_FH_JSI12i_1	95.573	84.545			1.0319	0.97051	10.404	4	0	Median	1.0292	0.84515	NaN	1	0	Median	0.79318	0.92196	NaN	1	0	Median	1.0809	1.0216	NaN	1	0	Median	1.0346	1.0648	NaN	1	0	Median	362320000	196360000	165960000	139000000	74123000	64873000	69442000	49058000	20385000	65016000	32493000	32523000	88862000	40684000	48178000	39395	403	37061	241693;241694;241695;241696	324188;324189;324190;324191;324192;324193;324194;324195	324190			8	
NPELSTQLIDIIHTAAAR	0	Unmodified	1962.0534	0.053439139	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	2	1	2	99.483	99.403	3	0.00010932	85806	160511_QHF_FH_JSI12i_2	78.917	68.817			2.4574	2.3323	112.88	7	7	Median	2.3366	2.0177	181.05	2	2	Median	1.1888	1.4623	192.99	2	2	Median	2.4574	2.3323	NaN	1	1	Median	2.4758	2.5974	53.571	2	2	Median	174420000	66609000	107810000	40948000	14423000	26525000	51156000	25061000	26095000	25326000	7864900	17462000	56987000	19259000	37727000	39396	5106	37062	241697;241698;241699;241700;241701;241702;241703	324196;324197;324198;324199;324200;324201;324202	324197			7	
NPENWAYYK	1	Unmodified	1183.5298	0.52982336	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.026	41.105	2	0.019188	35203	160511_QHF_FH_JSI12i_2	50.878	39.388			2.7641	2.9064	0.22569	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9261	2.9018	NaN	1	1	Median	2.6111	2.9111	NaN	1	1	Median	333310000	68076000	265230000	0	0	0	0	0	0	209440000	39101000	170340000	123870000	28975000	94892000	39397	4518	37063	241704;241705	324203;324204	324203			2	
NPEPELLVR	0	Unmodified	1065.5819	0.58185894	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	3	3	47.421	44.613	2	0.0011447	39978	160511_QHF_FH_JSI10i_1	70.332	61.992			0.96949	1.0165	8.9332	10	1	Median	1.2009	1.0104	9.6791	2	0	Median	0.78648	0.95093	12.158	2	0	Median	0.93683	0.93104	9.8705	3	1	Plateau	0.9191	1.0564	9.5746	3	0	Plateau	4620500000	2215400000	2405100000	944340000	387780000	556560000	1254000000	686150000	567830000	1632700000	767250000	865400000	789530000	374210000	415310000	39398	2569	37064	241706;241707;241708;241709;241710;241711;241712;241713;241714;241715	324205;324206;324207;324208;324209;324210;324211;324212;324213;324214;324215;324216;324217;324218;324219;324220;324221	324212			17	
NPEQEPIPIVLR	0	Unmodified	1403.7773	0.77726428	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.128	67.551	2	8.9747E-05	61353	160511_QHF_FH_JSI11i_1	91.701	76.55			0.79952	0.81174	9.2411	4	0	Median	1.0645	0.86988	NaN	1	0	Median	0.61063	0.71077	NaN	1	0	Median	0.78765	0.77536	NaN	1	0	Median	0.81157	0.84983	NaN	1	0	Median	544530000	315810000	228730000	104100000	55162000	48938000	138460000	90964000	47500000	180960000	103890000	77065000	121010000	65789000	55224000	39399	2261	37065	241716;241717;241718;241719	324222;324223;324224;324225;324226;324227	324222			6	
NPEQVDLYQFMAK	1	Unmodified	1581.7497	0.7497289	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	4	2	78.592	78.047	2;3	8.9482E-11	70663	160511_QHF_FH_JSI10i_1	152.7	152.7			0.76695	0.83058	35.317	11	6	Median	0.90253	0.75692	36.254	2	1	Median	0.71797	0.83058	35.455	3	1	Median	0.73721	0.72111	46.42	4	3	Median	0.79633	0.85735	0.34262	2	1	Median	851270000	488300000	362960000	165130000	71329000	93797000	253790000	169680000	84112000	250720000	132450000	118270000	181630000	114840000	66786000	39400	1872	37066	241720;241721;241722;241723;241724;241725;241726;241727;241728;241729;241730;241731	324228;324229;324230;324231;324232;324233;324234;324235;324236;324237;324238;324239;324240;324241;324242;324243;324244;324245;324246;324247;324248;324249	324239			22	
NPESPFMFSLHLNEAR	0	Unmodified	1887.8938	0.89376737	4845	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.383	80.497	3	0.000404	69613	160511_QHF_FH_JSI12i_2	52.823	47.281			0.79121	0.80384	66.732	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51307	0.50146	NaN	1	1	Median	1.2201	1.2885	NaN	1	0	Median	24653000	13630000	11023000	0	0	0	0	0	0	10619000	7533100	3086300	14033000	6097000	7936400	39401	4845	37067	241732;241733	324250;324251;324252	324250			3	
NPEVEFCGYTTTHPSESK	1	Unmodified	2081.9	0.90003454	959	P0DPB6			yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.907	41.531	3	0.00017662	35535	160511_QHF_FH_JSI12i_2	61.477	56.476			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39402	959	37068	241734	324253	324253			1	
NPEVGLKPVWYSPK	2	Acetyl (K)	1654.8719	0.87189295	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.472	69.905	2	0.0011684	37086	160513_QHF_FH_JSI11Kac_5	91.858	76.885			0.72862	0.71764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72862	0.71764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4334400	3117700	1216700	0	0	0	0	0	0	4334400	3117700	1216700	0	0	0	39403	878	37069	241735	324254	324254	592		1	
NPEVPVNFAEFSK	1	Unmodified	1476.7249	0.72489436	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.147	73.65	2	7.8763E-05	67108	160511_QHF_FH_JSI12i_1	112.94	103.28			0.92017	0.93376	7.5124	4	0	Median	1.0003	0.81292	NaN	1	0	Median	0.78489	0.93218	NaN	1	0	Median	0.97192	0.96021	NaN	1	0	Median	0.87118	0.93535	NaN	1	0	Median	1320900000	667560000	653360000	271000000	146110000	124890000	261310000	131120000	130190000	409580000	213550000	196030000	379030000	176780000	202250000	39404	278	37070	241736;241737;241738;241739	324255;324256;324257;324258;324259;324260;324261;324262;324263;324264;324265;324266	324259			12	
NPFDTFFGQR	0	Unmodified	1227.5673	0.5672715	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.621	76.787	2	1.9948E-06	66207	160511_QHF_FH_JSI12i_2	111.82	99.613			1.1886	1.6226	18.262	4	0	Linear	1.1331	0.98758	NaN	1	0	Median	1.1156	1.3837	NaN	1	0	Median	1.4419	1.4513	NaN	1	0	Median	1.2468	1.4256	NaN	1	0	Median	273060000	108930000	164120000	36983000	15588000	21395000	59921000	27344000	32577000	108720000	38302000	70415000	67437000	27700000	39737000	39405	1262	37071	241740;241741;241742;241743	324267;324268;324269;324270;324271	324267			5	
NPFGNAGLLLGEAGK	1	Unmodified	1456.7674	0.76742787	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	3	2	79.648	78.956	2;3	4.25E-07	69593	160511_QHF_FH_JSI11i_2	138.89	123.75			1.0225	1.0963	24.568	10	5	Median	0.86184	0.73847	32.13	2	1	Median	0.79572	0.9927	11.786	3	2	Plateau	1.1026	1.1228	22.951	3	1	Median	1.0957	1.1824	13.579	2	1	Median	940100000	500440000	439650000	150040000	64866000	85173000	223210000	138590000	84626000	361340000	193670000	167660000	205510000	103320000	102190000	39406	1675	37072	241744;241745;241746;241747;241748;241749;241750;241751;241752;241753	324272;324273;324274;324275;324276;324277;324278;324279;324280;324281;324282;324283;324284;324285;324286;324287;324288;324289;324290;324291;324292;324293;324294;324295;324296	324288			25	
NPFLAAVTTNRK	1	Unmodified	1330.7357	0.73573382	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.55	0.498		5	6							5	4	2		45.861	44.709	2;3	2.1332E-06	36777	160511_QHF_FH_JSI9i_3	125.75	93.812			0.91892	0.88457	31.381	10	4	Median	1.0372	0.87394	36.197	5	3	Median	0.87252	1.0051	33.426	3	1	Median	0.85333	0.81585	30.287	2	0	Median	NaN	NaN	NaN	0	0	Median	729180000	379110000	350070000	353490000	181050000	172440000	266930000	147430000	119500000	108760000	50639000	58126000	0	0	0	39407	1100	37073	241754;241755;241756;241757;241758;241759;241760;241761;241762;241763;241764	324297;324298;324299;324300;324301;324302;324303;324304;324305;324306;324307;324308;324309;324310;324311;324312;324313;324314;324315;324316;324317;324318;324319;324320;324321	324306			25	
NPFTLGDSSNPGQTER	0	Unmodified	1718.786	0.78599106	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		44.388	43.588	2	0.00038011	39401	160511_QHF_FH_JSI11i_1	81.494	58.577			0.75785	0.71436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75785	0.71436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34262000	23691000	10571000	10368000	10368000	0	0	0	0	23894000	13323000	10571000	0	0	0	39408	498	37074	241765;241766	324322;324323	324322			2	
NPGFEIIHGLLDR	0	Unmodified	1479.7834	0.78341229	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							2	3	5	4	87.282	86.797	2;3	7.2433E-05	74939	160511_QHF_FH_JSI12i_3	59.709	51.532			0.86696	0.92293	56.374	12	2	Median	3.3192	2.7916	NaN	1	1	Median	0.76301	0.91666	48.974	3	1	Plateau	1.0221	0.94109	28.235	4	0	Linear	0.76418	0.85165	54.667	4	0	Median	498590000	267880000	230720000	22535000	4550300	17985000	50127000	23915000	26213000	161700000	94127000	67574000	264230000	145280000	118950000	39409	4982	37075	241767;241768;241769;241770;241771;241772;241773;241774;241775;241776;241777;241778;241779;241780	324324;324325;324326;324327;324328;324329;324330;324331;324332;324333;324334;324335;324336;324337;324338;324339;324340;324341;324342;324343;324344;324345;324346	324343			23	
NPGNQAAYEHFETMK	1	Unmodified	1735.7624	0.76241885	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.38	1	5						2	1	1	1	5	2	41.371	37.447	2;3	7.3867E-05	31979	160511_QHF_FH_JSI11i_2	66.335	63.675			0.80483	0.86713	43.741	9	3	Median	0.80483	0.68525	NaN	1	0	Median	0.73565	0.86713	NaN	1	1	Median	0.96624	0.9748	58.101	5	2	Median	0.6303	0.70512	9.7529	2	0	Median	1823400000	1028500000	794970000	371500000	197320000	174180000	2850900	1989400	861530	1012200000	589590000	422630000	436860000	239570000	197290000	39410	1139	37076	241781;241782;241783;241784;241785;241786;241787;241788;241789	324347;324348;324349;324350;324351;324352;324353;324354;324355;324356;324357;324358;324359;324360;324361;324362	324357			16	
NPGVGNGDDEAAELMQQVNVLK	1	Unmodified	2297.0958	0.095774239	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	4	2	3	91.498	91.153	2;3	9.4999E-18	82550	160511_QHF_FH_JSI10i_1	138.87	118.76			0.88062	0.90168	20.253	11	6	Median	0.79948	0.64532	9.7101	2	0	Median	0.94091	1.0645	8.8405	4	4	Median	0.94192	0.91774	5.4643	2	0	Median	0.85734	0.88427	8.5845	3	2	Plateau	650900000	321140000	329760000	77499000	42500000	34999000	248530000	116890000	131640000	147760000	79344000	68420000	177110000	82406000	94700000	39411	2698	37077	241790;241791;241792;241793;241794;241795;241796;241797;241798;241799;241800	324363;324364;324365;324366;324367;324368;324369;324370;324371;324372;324373;324374;324375;324376;324377;324378;324379;324380;324381	324376			19	
NPGYPQSEGLLGECMIR	0	Unmodified	1919.887	0.88696744	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	1	3	70	69.587	2	0.0001219	59950	160511_QHF_FH_JSI12i_2	73.848	64.894			1.0245	1.2085	26.478	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0245	1.2085	NaN	1	1	Median	0.90736	0.88311	NaN	1	1	Median	1.5183	1.4949	NaN	1	1	Median	39932000	15630000	24302000	0	0	0	15154000	3967000	11187000	13746000	8537300	5208700	11032000	3125700	7906300	39412	4331	37078	241801;241802;241803;241804;241805	324382;324383;324384;324385;324386	324383			5	
NPHNDRFVLSK	1	Unmodified	1325.684	0.6840326	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		19.598	18.695	3	0.00074845	15499	160511_QHF_FH_JSI10i_3	50.354	40.699			0.76573	0.73099	101.11	4	1	Median	2.0352	1.6244	131.2	2	1	Median	0.72914	0.83186	NaN	1	0	Median	0.43219	0.39867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	578010000	258310000	319710000	416400000	158130000	258260000	110320000	66910000	43410000	51298000	33262000	18036000	0	0	0	39413	1322	37079	241806;241807;241808;241809	324387;324388;324389;324390;324391;324392	324388			6	
NPHPSSAFLNLIGFVSR	0	Unmodified	1854.9741	0.97406661	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	88.81	80.691	2;3	4.3524E-07	46226	160513_QHF_FH_JSI10Kac_6	135.47	122.04			0.97348	0.97033	3.7298	6	0	Median	1.1857	1.0103	4.6522	2	0	Median	0.80262	0.95435	1.2965	2	0	Median	1.0586	0.99638	NaN	1	0	Median	0.89519	0.94799	NaN	1	0	Median	2479500000	1238700000	1240800000	723790000	315510000	408280000	1045600000	597520000	448030000	415920000	177450000	238470000	294260000	148190000	146070000	39414	1791	37080	241810;241811;241812;241813;241814;241815;241816	324393;324394;324395;324396;324397;324398;324399;324400;324401;324402;324403	324403			11	
NPHVALYALEVMESVVK	1	Unmodified	1897.9972	0.99716981	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.5	6.06		3							1		1	1	2	101.12	98.672	3	1.0227E-06	89931	160511_QHF_FH_JSI11i_2	87.287	83.538			0.89801	0.99424	56.937	4	1	Median	NaN	NaN	NaN	0	0	Median	1.018	1.2526	NaN	1	0	Median	0.79213	0.78918	NaN	1	0	Median	1.1048	1.1821	91.427	2	1	Median	158010000	88200000	69813000	0	0	0	33980000	19038000	14943000	51708000	27340000	24367000	72325000	41822000	30503000	39415	225	37081	241817;241818;241819;241820	324404;324405;324406	324405			3	
NPIHAIGLLIR	0	Unmodified	1215.7452	0.74517629	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	4	3	1	3	74.752	68.494	3	0.0037575	36512	160513_QHF_FH_JSI11Kac_6	46.592	32.628			1.0342	1.1173	114.08	9	7	Median	0.75513	0.64092	127.1	4	4	Median	0.46782	0.5647	26.319	2	2	Median	2.7358	2.6769	NaN	1	0	Median	2.3406	2.5037	114.11	2	1	Median	167320000	94419000	72901000	66010000	43417000	22594000	46465000	31121000	15344000	32782000	11243000	21539000	22063000	8638800	13424000	39416	2303	37082	241821;241822;241823;241824;241825;241826;241827;241828;241829;241830;241831	324407;324408;324409;324410;324411;324412;324413;324414;324415;324416	324409			10	
NPILWNVADVVIK	1	Unmodified	1479.8449	0.84494991	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	101.38	101.26	2	2.1073E-08	87077	160511_QHF_FH_JSI12i_2	141.08	129.37			1.0656	1.2975	38.5	3	1	Plateau	1.0656	0.90869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.769	1.7967	NaN	1	0	Median	0.83002	0.93705	NaN	1	0	Median	741210000	363110000	378100000	138220000	78239000	59985000	0	0	0	314620000	118420000	196200000	288370000	166460000	121910000	39417	817	37083	241832;241833;241834	324417;324418;324419;324420;324421	324417			5	
NPLIAGK	1	Unmodified	711.42792	0.42792448	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.946	17.858	2	0.0572	14764	160511_QHF_FH_JSI12i_2	41.502	26.727			0.86239	0.96859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86239	0.96859	NaN	1	0	Median	346060000	178110000	167950000	0	0	0	0	0	0	0	0	0	346060000	178110000	167950000	39418	2002	37084	241835	324422	324422			1	
NPLIINSIIDK	1	Unmodified	1238.7234	0.72343779	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.985	79.833	2	0.0010665	69008	160511_QHF_FH_JSI12i_2	71.03	44.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39419	5446	37085	241836	324423	324423			1	
NPLLITEEDAFK	1	Unmodified	1388.7187	0.71874635	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	75.572	74.853	2	4.8004E-05	65545	160511_QHF_FH_JSI11i_2	110.39	80.133			4.9558	4.4607	141.72	5	5	Median	5.046	4.4607	NaN	1	1	Median	1.2977	1.5624	258.47	2	2	Median	2.8234	2.8029	NaN	1	1	Median	4.9558	5.5003	NaN	1	1	Median	170180000	64363000	105810000	32692000	6710200	25982000	54916000	35120000	19796000	54219000	14191000	40028000	28350000	8342700	20007000	39420	5289	37086	241837;241838;241839;241840;241841	324424;324425;324426;324427;324428;324429	324428			6	
NPLPPSVGVVDK	1	Unmodified	1220.6765	0.6764876	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	5.81	6					10				3	4	5	4	56.521	50.303	2	4.8311E-05	44714	160511_QHF_FH_JSI11i_1	99.283	86.246			0.98707	1.0082	12.703	16	2	Median	1.237	1.0341	11.857	3	1	Median	0.81778	0.967	11.054	4	0	Median	1.0308	1.0188	18.01	5	1	Median	0.95844	1.0267	11.344	4	0	Median	2174400000	1071400000	1103000000	991340000	439870000	551470000	368520000	216020000	152500000	428780000	216410000	212360000	385740000	199090000	186650000	39421	3609	37087	241842;241843;241844;241845;241846;241847;241848;241849;241850;241851;241852;241853;241854;241855;241856;241857	324430;324431;324432;324433;324434;324435;324436;324437;324438;324439;324440;324441;324442;324443;324444;324445;324446;324447;324448;324449;324450;324451;324452;324453;324454;324455;324456;324457;324458;324459;324460;324461;324462;324463;324464;324465;324466;324467;324468;324469;324470;324471;324472;324473;324474;324475;324476;324477;324478;324479;324480;324481;324482;324483;324484;324485	324432			56	
NPLPPSVGVVDKK	2	Unmodified	1348.7715	0.77145062	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	40.898	40.218	3	0.0012232	34892	160511_QHF_FH_JSI12i_2	54.09	49.389			0.97201	1.0688	3.5578	7	0	Median	1.2585	1.0769	NaN	1	0	Median	0.90901	1.077	3.4987	2	0	Median	1.0642	1.0518	2.2653	2	0	Median	0.96882	1.0413	6.5962	2	0	Median	461110000	231990000	229120000	66146000	28118000	38028000	108050000	56697000	51354000	157540000	75186000	82349000	129380000	71987000	57393000	39422	3609	37088	241858;241859;241860;241861;241862;241863;241864	324486;324487;324488;324489;324490;324491;324492;324493;324494	324488			9	
NPLPSKETIEQEK	2	Acetyl (K)	1553.7937	0.7937022	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	59.009	49.818	2	0.016352	26339	160513_QHF_FH_JSI12Kac_3	50.284	35.311			0.18137	0.19196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18137	0.19196	NaN	1	0	Median	10544000	8846000	1698000	0	0	0	0	0	0	0	0	0	10544000	8846000	1698000	39423	2004	37089	241865	324495	324495	2030		1	
NPLVAVYYTNR	0	Unmodified	1308.6826	0.68263561	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.27	6.88		6						1	4	1	4	3	3	61.618	55.947	2	4.195E-09	30949	160513_QHF_FH_JSI10Kac_6	119.22	86.331			1.0508	1.1068	88.444	9	4	Median	1.4432	1.2109	NaN	1	0	Median	0.85115	1.0145	108.04	4	2	Median	2.0575	2.0349	100.37	2	1	Median	0.63815	0.69607	65.585	2	1	Median	1039100000	478630000	560520000	172790000	71569000	101220000	391040000	190050000	200980000	332430000	131090000	201340000	142890000	85916000	56970000	39424	5434	37090	241866;241867;241868;241869;241870;241871;241872;241873;241874;241875;241876	324496;324497;324498;324499;324500;324501;324502;324503;324504;324505;324506;324507;324508;324509;324510;324511;324512	324512			17	
NPMTNYTTVPQEFMDHSISPFMR	0	Unmodified	2742.224	0.22402799	1699	P50225	SULT1A1	Sulfotransferase 1A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.74	100.57	3	3.4383E-05	88230	160511_QHF_FH_JSI11i_2	54.728	48.295			1.1158	1.1632	10.26	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2401	1.2507	NaN	1	1	Median	1.0041	1.0818	NaN	1	0	Median	116520000	43323000	73200000	0	0	0	0	0	0	59537000	23117000	36420000	56985000	20206000	36779000	39425	1699	37091	241877;241878	324513;324514	324514			2	
NPMVETLGTVLQLK	1	Unmodified	1541.8487	0.84871466	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	100.67	100.53	2	0.0014118	86475	160511_QHF_FH_JSI12i_2	77.062	67.74			0.40704	0.40097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40704	0.40097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40507000	39208000	1298900	9553100	9553100	0	0	0	0	12415000	11116000	1298900	18539000	18539000	0	39426	2239	37092	241879;241880;241881	324515;324516;324517	324515			3	
NPNAGDKFK	2	Acetyl (K)	1031.5036	0.50360861	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		27.898	20.16	2	0.035809	12290	160513_QHF_FH_JSI11Kac_3	56.258	41.482			0.074001	0.072426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074001	0.072426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3746900	3416400	330470	0	0	0	0	0	0	3746900	3416400	330470	0	0	0	39427	456	37093	241882	324518	324518			1	
NPNAMLVNLEEPLASTYQDILYQAK	1	Unmodified	2834.416	0.41604575	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	102.08	102	3	8.5711E-25	92580	160511_QHF_FH_JSI12i_1	150.53	143.17			0.86368	0.9864	28.182	4	1	Median	NaN	NaN	NaN	0	0	Median	0.63321	0.76094	16.838	2	0	Median	1.2799	1.2601	NaN	1	1	Median	1.0707	1.1351	NaN	1	0	Median	691400000	370760000	320640000	0	0	0	368260000	233450000	134810000	114920000	31299000	83626000	208210000	106010000	102200000	39428	1600	37094	241883;241884;241885;241886	324519;324520;324521;324522;324523;324524	324520			5	
NPNAPMLPPPK	1	Unmodified	1174.6169	0.61686423	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.862	37.169	2	0.011143	32799	160511_QHF_FH_JSI9i_1	46.462	33.835			0.68306	0.56525	12.76	3	1	Plateau	0.64771	0.53887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69875	0.68571	NaN	1	0	Median	0.55121	0.56525	NaN	1	1	Median	114050000	65477000	48573000	38190000	19814000	18376000	0	0	0	41883000	25562000	16321000	33978000	20102000	13876000	39429	238	37095	241887;241888;241889	324525;324526;324527	324527			2	
NPNEGEKFK	2	Acetyl (K)	1103.5247	0.52473799	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	24.676	17.354	2	0.0047659	10409	160513_QHF_FH_JSI10Kac_3	78.516	61.276			0.02824	0.031995	2.1656	2	2	Median	NaN	NaN	NaN	0	0	Median	0.026945	0.031509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.029597	0.032489	NaN	1	1	Median	11340000	10771000	569450	0	0	0	5754100	5423700	330310	0	0	0	5585900	5346800	239140	39430	1376	37096	241890;241891	324528;324529	324529	1319		2	
NPNGPYPYTLK	1	Unmodified	1262.6295	0.62953741	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.62	4	5	1				2			4	3	3	2	42.823	40.315	2	6.7873E-05	35657	160511_QHF_FH_JSI9i_1	92.538	71.091			0.97565	0.9455	18.12	12	3	Median	1.018	0.84692	14.561	4	2	Median	0.8727	1.0177	19.607	3	0	Median	1.0968	1.0903	11.808	3	1	Median	0.84805	0.92291	12.586	2	0	Median	3687000000	1872000000	1815000000	832350000	416210000	416140000	839040000	423200000	415840000	1053400000	513620000	539820000	962160000	518940000	443230000	39431	1063	37097	241892;241893;241894;241895;241896;241897;241898;241899;241900;241901;241902;241903	324530;324531;324532;324533;324534;324535;324536;324537;324538;324539;324540;324541;324542;324543;324544;324545;324546;324547;324548;324549	324542			20	
NPNNMQVLYTALQHSSELAPK	1	Unmodified	2354.1689	0.1688796	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.096	88.361	3	0.00053506	76371	160511_QHF_FH_JSI12i_2	44.089	34.805			1.0102	1.0573	13.85	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1646	1.166	NaN	1	0	Median	0.87626	0.95863	NaN	1	0	Median	33733000	15913000	17820000	0	0	0	0	0	0	25388000	10596000	14792000	8345100	5317000	3028200	39432	3508	37098	241904;241905	324550;324551	324550			2	
NPNNPNAHGDFLK	1	Unmodified	1436.6797	0.6796755	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		21.767	21.444	3	0.054351	17746	160511_QHF_FH_JSI11i_2	25.185	15.342			4.5541	4.4649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5541	4.4649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42031000	6125200	35906000	0	0	0	0	0	0	42031000	6125200	35906000	0	0	0	39433	3439	37099	241906	324552	324552			1	
NPNTSEPQHLLVMK	1	Unmodified	1606.8137	0.81372614	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	6.27	1	9						1	3	3	4	3	4	45.714	42.109	2;3	3.9499E-05	36951	160511_QHF_FH_JSI10i_2	94.728	85.678			0.87687	0.92871	41.524	13	5	Median	1.2477	1.0392	18.98	3	2	Median	0.75234	0.9185	74.2	4	1	Median	0.9336	0.92884	12.893	2	0	Median	0.84226	0.92858	24.647	4	2	Median	3430000000	1718300000	1711800000	702780000	344960000	357820000	782450000	399080000	383370000	1082900000	507650000	575240000	861880000	466560000	395310000	39434	821	37100	241907;241908;241909;241910;241911;241912;241913;241914;241915;241916;241917;241918;241919;241920	324553;324554;324555;324556;324557;324558;324559;324560;324561;324562;324563;324564;324565;324566;324567;324568;324569;324570;324571;324572	324569			20	
NPNTSEPQHLLVMKGAPER	1	Acetyl (K)	2159.0793	0.079336314	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		64.22	53.785	3	0.01425	27254	160513_QHF_FH_JSI10Kac_5	37.624	20.744			0.069385	0.068982	150.74	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.1932	1.4043	NaN	1	0	Median	0.14148	0.1409	101	2	2	Median	NaN	NaN	NaN	0	0	Median	27419000	22825000	4593600	0	0	0	2808500	1182200	1626300	24610000	21643000	2967300	0	0	0	39435	821	37101	241921;241922;241923	324573;324574;324575;324576	324576	470		4	
NPNTSEPQHLLVMKGAPER	1	Acetyl (K);Oxidation (M)	2175.0743	0.074250936	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		55.214	44.42	3	0.010321	24475	160513_QHF_FH_JSI11Kac_5	47.752	43.77			0.10992	0.10773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10992	0.10773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10473000	10191000	282080	0	0	0	0	0	0	10473000	10191000	282080	0	0	0	39436	821	37101	241924	324577	324577	470	347	1	
NPPAFTELQLPR	0	Unmodified	1381.7354	0.73539946	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.907	73.036	2	0.0019626	64911	160511_QHF_FH_JSI10i_2	58.63	49.675			0.96203	1.0139	8.2415	4	1	Median	1.3041	1.1347	NaN	1	0	Median	0.75293	0.93802	NaN	1	0	Median	1.0576	1.0461	NaN	1	0	Median	0.87509	0.98268	NaN	1	1	Median	139990000	70419000	69566000	33761000	15523000	18238000	30181000	18429000	11752000	46724000	19881000	26843000	29320000	16586000	12734000	39437	3064	37102	241925;241926;241927;241928	324578;324579;324580	324580			3	
NPPDIVVQPGHIR	0	Unmodified	1440.7837	0.78374664	673	O95297	MPZL1	Myelin protein zero-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	44.249	43.375	2;3	1.7841E-05	38081	160511_QHF_FH_JSI10i_2	76.868	60.095			1.0595	1.0875	16.001	5	0	Median	1.0595	0.90579	NaN	1	0	Median	0.6691	0.81615	NaN	1	0	Median	1.1305	1.1341	5.9413	2	0	Median	0.99069	1.1414	NaN	1	0	Median	654470000	344070000	310390000	118540000	60113000	58427000	137980000	76734000	61248000	264310000	143270000	121040000	133630000	63952000	69683000	39438	673	37103	241929;241930;241931;241932;241933;241934	324581;324582;324583;324584;324585;324586;324587;324588;324589;324590	324589			10	
NPPENSDSGTGKK	2	Unmodified	1329.6161	0.61607219	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	4.09	8						1			2	2	3	2	4.8537	3.6196	2;3	9.5766E-06	2413	160511_QHF_FH_JSI10i_1	87.184	62.409			1.0568	1.0757	6.8461	8	0	Median	1.324	1.0911	4.018	2	0	Median	0.80214	0.94047	NaN	1	0	Median	1.0329	1.0071	6.7903	3	0	Median	1.0568	1.1109	2.5505	2	0	Median	1459400000	688280000	771150000	391720000	158980000	232740000	114260000	78682000	35575000	455700000	192360000	263350000	497750000	258260000	239490000	39439	1839	37104	241935;241936;241937;241938;241939;241940;241941;241942;241943	324591;324592;324593;324594;324595;324596;324597;324598;324599;324600;324601;324602;324603;324604	324599			14	
NPPGASTYNK	1	Unmodified	1047.4985	0.49852324	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.574	10.19	2	0.00031818	7993	160511_QHF_FH_JSI12i_1	78.264	66.057			0.91406	0.9748	18.742	4	0	Median	1.3579	1.1086	NaN	1	0	Median	0.91098	1.0666	NaN	1	0	Median	0.91714	0.89086	NaN	1	0	Median	0.69101	0.73679	NaN	1	0	Median	1409400000	729840000	679540000	380860000	190720000	190140000	389780000	203740000	186040000	292140000	151750000	140390000	346590000	183620000	162970000	39440	4442	37105	241944;241945;241946;241947	324605;324606;324607;324608;324609;324610	324606			6	
NPPGFAFVEFEDPRDAADAVR	0	Unmodified	2319.092	0.09200949	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.62	2	7	4						1	3	2	5	4	88.416	87.26	2;3	1.2296E-07	78330	160511_QHF_FH_JSI10i_2	91.276	82.675			1.0619	1.0837	11.878	13	1	Median	1.1987	1.0322	5.2522	3	0	Plateau	0.9635	1.1807	11.559	2	0	Median	1.0619	1.1305	17.537	5	1	Median	1.0414	1.0821	4.9265	3	0	Median	6411700000	3106400000	3305300000	886670000	415120000	471550000	936150000	494560000	441580000	2253800000	1048800000	1205000000	2335000000	1147800000	1187200000	39441	2131	37106	241948;241949;241950;241951;241952;241953;241954;241955;241956;241957;241958;241959;241960;241961	324611;324612;324613;324614;324615;324616;324617;324618;324619;324620;324621;324622;324623;324624;324625;324626;324627;324628;324629	324625			19	
NPPGFAFVEFEDPRDAEDAVR	0	Unmodified	2377.0975	0.097488798	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	87.439	87.032	3	7.5931E-13	75654	160511_QHF_FH_JSI12i_3	116.98	108.37			1.0062	1.16	15.179	9	1	Linear	1.1886	1.0149	NaN	1	0	Median	0.81968	0.98953	22.616	2	1	Median	1.2231	1.2074	13.866	3	0	Plateau	0.97551	1.0358	13.765	3	0	Plateau	2332500000	1072500000	1259900000	332340000	148780000	183560000	440850000	219190000	221670000	885350000	361570000	523780000	673910000	343000000	330920000	39442	2745	37107	241962;241963;241964;241965;241966;241967;241968;241969;241970	324630;324631;324632;324633;324634;324635;324636;324637;324638;324639;324640;324641;324642;324643;324644;324645;324646;324647	324647			18	
NPPGGKSSLVLG	1	Acetyl (K)	1166.6295	0.62953741	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	1	0	0	1				By MS/MS	11.5	0.5				1	1								2	67.997	58.545	2	0.032307	25844	160513_QHF_FH_JSI12Kac_2	46.001	34.233			0.7959	0.8541	18.229	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7959	0.8541	18.229	2	0	Median	3808900	2245700	1563200	0	0	0	0	0	0	0	0	0	3808900	2245700	1563200	39443	5362	37108	241971;241972	324648	324648			1	
NPPNQSSNERPPSLLVIETK	1	Unmodified	2219.1546	0.15460975	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	56.646	56.114	3	6.0782E-05	49329	160511_QHF_FH_JSI9i_2	58.997	42.691			0.94926	0.97533	13.587	5	0	Median	1.0372	0.88687	NaN	1	0	Median	0.80452	0.97533	NaN	1	0	Median	0.89577	0.88614	19.111	2	0	Median	0.94926	1.1034	NaN	1	0	Median	599720000	307220000	292500000	113730000	56901000	56834000	141700000	74407000	67291000	271960000	144040000	127920000	72328000	31875000	40453000	39444	238	37109	241973;241974;241975;241976;241977	324649;324650;324651;324652	324650			4	
NPPPNADPNMK	1	Unmodified	1193.5499	0.54990688	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	15.773	15.459	2	0.0015156	12412	160511_QHF_FH_JSI10i_1	67.704	56.994			1.0161	1.0383	32.141	4	3	Median	NaN	NaN	NaN	0	0	Median	1.4768	1.7389	NaN	1	1	Median	0.89835	0.88309	NaN	1	1	Median	0.97572	1.0383	22.151	2	1	Median	435370000	157330000	278050000	0	0	0	142380000	53538000	88846000	44921000	25306000	19615000	248070000	78484000	169590000	39445	3966	37110	241978;241979;241980;241981;241982	324653;324654;324655;324656;324657;324658	324658			6	
NPPPNSDPNLRR	0	Unmodified	1375.6957	0.69565991	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			11.732	11.175	3	0.022757	9076	160511_QHF_FH_JSI10i_2	28.327	14.518			0.63908	0.75883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63908	0.75883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15516000	8680400	6835400	0	0	0	15516000	8680400	6835400	0	0	0	0	0	0	39446	4118	37111	241983	324659	324659			1	
NPPVNSLSLEFLTELVISLEK	1	Unmodified	2341.2781	0.27807893	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9	7		2							2	1	3			103.48	100.59	3	2.0897E-08	57298	160513_QHF_FH_JSI10Kac_6	138.22	112.07			0.9663	1.0518	14.678	4	2	Median	1.0134	0.87289	NaN	1	0	Median	0.92137	1.0965	10.288	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	339120000	176180000	162930000	11489000	5794700	5694100	327630000	170390000	157240000	0	0	0	0	0	0	39447	1525	37112	241984;241985;241986;241987	324660;324661;324662;324663;324664;324665	324665			6	
NPQAGVPPFSSLKGK	2	Acetyl (K)	1567.8358	0.83584179	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		73.495	62.778	2	0.0026348	33437	160513_QHF_FH_JSI10Kac_4	68.069	54.163			1.1141	1.2041	10.987	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93719	1.1141	NaN	1	0	Median	1.3244	1.3014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11943000	5895500	6047900	0	0	0	4968900	2648700	2320100	6974600	3246800	3727700	0	0	0	39448	3330	37113	241988;241989	324666	324666	2844		1	
NPQAHIEGNMK	1	Unmodified	1237.5874	0.58735502	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	12.185	11.759	2	0.00014395	9615	160511_QHF_FH_JSI10i_2	94.692	78.489			1.48	1.602	73.683	4	4	Median	NaN	NaN	NaN	0	0	Median	0.85695	1.0492	NaN	1	1	Median	1.48	1.4879	70.307	2	2	Median	3.9188	4.3313	NaN	1	1	Median	154300000	57697000	96599000	0	0	0	23498000	14429000	9068700	100100000	37050000	63045000	30702000	6217700	24485000	39449	427	37114	241990;241991;241992;241993	324667;324668;324669;324670	324670			4	
NPQNSSQSADGLR	0	Unmodified	1372.6331	0.63311924	956	P0DN76;Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.32	4	3				3				1	4	3	2	11.036	8.5831	2	2.1084E-15	7280	160511_QHF_FH_JSI9i_1	162	153.14			0.83891	0.90706	9.7789	9	2	Median	1.029	0.83952	NaN	1	0	Median	0.75591	0.90564	7.0613	4	2	Median	1.0364	1.0089	15.048	2	0	Median	0.88485	0.95477	8.2706	2	0	Median	1594300000	766050000	828250000	381590000	167150000	214440000	424300000	207060000	217240000	379920000	178400000	201520000	408490000	213430000	195050000	39450	956	37115	241994;241995;241996;241997;241998;241999;242000;242001;242002;242003	324671;324672;324673;324674;324675;324676;324677;324678;324679;324680;324681;324682;324683;324684;324685;324686	324679			16	
NPQNSTVLAR	0	Unmodified	1098.5782	0.57817054	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	14.991	14.361	2	0.0043766	11427	160511_QHF_FH_JSI11i_2	65.224	41.252			0.86149	0.94759	14.173	3	1	Median	0.85608	0.7531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93678	0.94759	NaN	1	0	Median	0.86149	0.97544	NaN	1	1	Median	47409000	26750000	20660000	13090000	6638800	6451400	0	0	0	23682000	12128000	11554000	10637000	7982700	2654500	39451	2409	37116	242004;242005;242006	324687;324688;324689;324690	324690			4	
NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK	1	Oxidation (M)	4472.1965	0.1965147	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	1	0			By MS/MS		3	0			2									2		63.859	63.859	4	4.8434E-08	57283	160511_QHF_FH_JSI11i_3	43.302	39.306			1.2096	1.1151	16.279	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2096	1.1151	16.279	2	0	Median	NaN	NaN	NaN	0	0	Median	108330000	46669000	61664000	0	0	0	0	0	0	108330000	46669000	61664000	0	0	0	39452	1009	37117	242007;242008	324691;324692;324693	324692		597;598	3	
NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK	1	Unmodified	4456.2016	0.20160007	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.553	1	8	3							3	2	5	2	71.137	70.528	4;5	1.4659E-57	62893	160511_QHF_FH_JSI11i_3	153.77	145.43			0.97041	0.9341	10.277	12	3	Median	1.0622	0.91636	11.134	3	2	Median	0.73809	0.89964	5.0198	2	0	Median	0.97992	0.96992	14.14	5	1	Median	0.89601	0.94789	1.7771	2	0	Median	1663800000	830130000	833690000	239370000	105560000	133800000	290900000	156790000	134110000	808440000	394900000	413550000	325110000	172880000	152230000	39453	1009	37117	242009;242010;242011;242012;242013;242014;242015;242016;242017;242018;242019;242020	324694;324695;324696;324697;324698;324699;324700;324701;324702;324703;324704;324705;324706;324707;324708;324709;324710;324711;324712;324713;324714;324715;324716;324717;324718	324695			25	
NPQQQESLK	1	Unmodified	1070.5356	0.53563702	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.4988	8.1494	2	2.8574E-06	5715	160511_QHF_FH_JSI9i_1	124.98	80.536			0.96504	0.95776	15.459	4	0	Median	0.98523	0.80518	NaN	1	0	Median	0.94527	1.1165	NaN	1	0	Median	1.0579	1.0535	NaN	1	0	Median	0.8128	0.87073	NaN	1	0	Median	501030000	260700000	240330000	137490000	64943000	72547000	123300000	73367000	49931000	132970000	71402000	61567000	107280000	50989000	56288000	39454	731	37118	242021;242022;242023;242024	324719;324720;324721;324722;324723;324724;324725;324726	324726			8	
NPQREEIIGNGEQQYVYLK	1	Unmodified	2277.139	0.13895968	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	55.729	54.921	3	1.1304E-10	46977	160511_QHF_FH_JSI12i_3	99.092	89.343			1.0084	1.0136	9.0109	5	0	Median	1.0501	0.88555	NaN	1	0	Median	0.81269	1.0138	NaN	1	0	Median	1.0084	1.0136	NaN	1	0	Median	0.98507	1.0349	12.296	2	0	Median	418690000	202200000	216490000	72337000	33948000	38390000	108340000	61885000	46451000	116650000	55546000	61108000	121360000	50820000	70542000	39455	2858	37119	242025;242026;242027;242028;242029	324727;324728;324729;324730;324731;324732;324733;324734	324733			8	
NPQSTEPVLGGGEPPFHGHR	0	Unmodified	2112.0137	0.013699589	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	37.054	37.054	3	0.01074	32445	160511_QHF_FH_JSI11i_3	32.353	17.099			0.91875	0.85174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91875	0.85174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27671000	14882000	12790000	0	0	0	0	0	0	27671000	14882000	12790000	0	0	0	39456	4529	37120	242030;242031	324735;324736;324737	324736			3	
NPQSYLYLVK	1	Unmodified	1223.655	0.65502388	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1			2	1	1	65.595	64.701	2	0.011203	55668	160511_QHF_FH_JSI12i_2	56.563	51.249			1.3274	1.3362	1.4701	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1107	1.336	NaN	1	1	Median	1.3274	1.3362	NaN	1	1	Median	1.2037	1.3706	NaN	1	1	Median	233570000	89799000	143770000	0	0	0	52701000	22706000	29995000	115730000	38397000	77338000	65138000	28697000	36441000	39457	100	37121	242032;242033;242034;242035	324738;324739;324740;324741	324738			4	
NPQTQTEER	0	Unmodified	1101.5051	0.50506518	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	4.9675	4.5819	2	0.00019193	2537	160511_QHF_FH_JSI12i_1	85.67	57.461			1.3977	1.2917	28.792	3	0	Median	1.5939	1.2917	NaN	1	0	Median	0.70305	0.83543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3977	1.4392	NaN	1	0	Median	214140000	113280000	100850000	50544000	19838000	30706000	74686000	46980000	27706000	0	0	0	88905000	46463000	42442000	39458	3009	37122	242036;242037;242038	324742;324743	324742			2	
NPRPGEENGK	1	Unmodified	1096.5261	0.52613497	2763	Q16774	GUK1	Guanylate kinase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		4.5995	4.2989	3	0.038948	2113	160511_QHF_FH_JSI11i_2	28.177	13.97			1.1152	1.2442	57.494	2	0	Median	NaN	NaN	NaN	0	0	Median	1.506	1.8683	NaN	1	0	Median	0.82585	0.82857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141770000	67384000	74389000	0	0	0	69058000	23112000	45946000	72715000	44272000	28443000	0	0	0	39459	2763	37123	242039;242040	324744	324744			1	
NPSAAFFCVAR	0	Unmodified	1238.5866	0.58662674	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	1	2	4	1	60.545	57.19	2	0.00027696	49566	160511_QHF_FH_JSI11i_2	90.263	80.746			1.2576	1.3908	46.017	7	5	Median	2.2609	1.9559	NaN	1	1	Median	0.78182	0.95039	NaN	1	0	Median	0.98033	0.94585	50.259	4	4	Median	1.2576	1.3908	NaN	1	0	Median	544110000	248340000	295770000	42906000	14384000	28523000	93380000	41835000	51545000	306910000	151510000	155390000	100910000	40607000	60303000	39460	494	37124	242041;242042;242043;242044;242045;242046;242047;242048	324745;324746;324747;324748;324749;324750;324751;324752;324753	324750			9	
NPSDSAVHSPFTK	1	Unmodified	1385.6575	0.65754307	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	3	2	2	29.173	28.264	2;3	7.2921E-05	24451	160511_QHF_FH_JSI9i_2	73.296	69.718			1.0621	1.192	12.474	8	0	Median	1.3725	1.1558	4.6363	2	0	Median	0.98877	1.2038	0.44348	2	0	Median	0.93599	0.9342	10.941	2	0	Median	1.1013	1.222	3.7968	2	0	Median	1310800000	654260000	656530000	300540000	146440000	154100000	311590000	178520000	133070000	411340000	184850000	226490000	287320000	144460000	142860000	39461	2505	37125	242049;242050;242051;242052;242053;242054;242055;242056;242057	324754;324755;324756;324757;324758;324759;324760;324761;324762;324763;324764;324765;324766;324767;324768;324769	324760			16	
NPSGINDDYGQLK	1	Unmodified	1419.663	0.66302238	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.575	35.967	2	0.00010642	32530	160511_QHF_FH_JSI12i_1	91.937	73.157			0.66973	0.93051	44.925	4	1	Linear	1.0137	0.82415	NaN	1	0	Median	0.56855	0.66934	NaN	1	0	Median	1.9452	1.892	NaN	1	1	Median	0.99114	1.0506	NaN	1	0	Median	179570000	94487000	85079000	38619000	16865000	21753000	56183000	37043000	19140000	34719000	13197000	21522000	50046000	27382000	22663000	39462	462	37126	242058;242059;242060;242061	324770;324771;324772;324773;324774;324775	324771			6	
NPSGLTQYIPVLVDSFLPLLK	1	Unmodified	2313.2984	0.29842044	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	104.33	104.24	2;3	1.5388E-18	91938	160511_QHF_FH_JSI11i_2	119.87	108.73			1.2148	1.175	12.753	5	0	Median	1.3625	1.197	NaN	1	0	Median	0.76394	0.94217	NaN	1	0	Median	1.2381	1.2318	6.6756	2	0	Median	0.95043	1.023	NaN	1	0	Median	165120000	76794000	88329000	12738000	6235100	6503300	31108000	15504000	15604000	113350000	51476000	61870000	7930800	3579300	4351600	39463	3860	37127	242062;242063;242064;242065;242066	324776;324777;324778;324779;324780;324781;324782;324783;324784;324785	324781			10	
NPSLMPK	1	Unmodified	785.41056	0.41055985	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.495	22.357	2	0.017405	19199	160511_QHF_FH_JSI11i_1	62.714	45.788			0.56353	0.52774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56353	0.52774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70690000	39510000	31179000	0	0	0	0	0	0	70690000	39510000	31179000	0	0	0	39464	5658	37128	242067	324786	324786			1	
NPSSAAPVQSR	0	Unmodified	1112.5574	0.5574351	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	1	0	3									1	1		1	9.4443	8.9978	2	0.012284	6489	160511_QHF_FH_JSI9i_1	45.077	22.553			0.7466	0.86526	19.42	3	0	Plateau	1.4161	1.1712	NaN	1	0	Median	0.7466	0.86526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78356	0.81538	NaN	1	0	Median	281890000	139390000	142500000	89007000	32391000	56616000	98256000	48956000	49300000	0	0	0	94627000	58042000	36585000	39465	235	37129	242068;242069;242070	324787	324787			1	
NPSSLFSKEAPK	2	Acetyl (K)	1345.6878	0.68778057	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		61.198	50.323	2	0.030808	28595	160513_QHF_FH_JSI11Kac_4	52.693	40.479			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3238400	0	3238400	0	0	0	1759700	0	1759700	1478700	0	1478700	0	0	0	39466	4603	37130	242071;242072	324788;324789	324789			2	
NPSSSVPPPSAGSVK	1	Unmodified	1409.7151	0.71505795	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	4	1	1	23.423	22.747	2	2.3242E-11	19750	160511_QHF_FH_JSI10i_1	102.87	76.83			0.95473	0.97625	19.664	5	2	Median	1.1364	0.938	29.588	2	1	Median	0.61481	0.7225	NaN	1	1	Median	1.0204	0.99033	NaN	1	0	Median	0.95473	0.97625	NaN	1	0	Median	337030000	163710000	173320000	139470000	64475000	74995000	46982000	27464000	19518000	82152000	38116000	44036000	68426000	33652000	34774000	39467	3799	37131	242073;242074;242075;242076;242077;242078;242079;242080	324790;324791;324792;324793;324794;324795;324796;324797;324798;324799;324800;324801;324802;324803;324804;324805;324806	324800			17	
NPSTNFQEPVQPLTQQQVAQMQLK	1	Unmodified	2753.3807	0.38066329	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	76.803	76.335	2;3	5.7014E-40	69161	160511_QHF_FH_JSI10i_1	205.68	193.47			0.85005	0.90621	22.991	7	3	Median	0.8703	0.70918	19.381	2	1	Median	0.75571	0.86404	7.7794	2	1	Median	1.1929	1.1602	16.714	2	1	Median	0.85005	0.90621	NaN	1	0	Median	1145200000	587730000	557500000	315200000	154850000	160340000	262690000	141050000	121640000	311530000	139970000	171550000	255810000	151850000	103960000	39468	1163	37132	242081;242082;242083;242084;242085;242086;242087	324807;324808;324809;324810;324811;324812;324813;324814;324815;324816;324817;324818	324815			12	
NPSTSLGPTLEPEEVVNR	0	Unmodified	1937.9694	0.96943474	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	63.25	62.529	2;3	2.0576E-16	55569	160511_QHF_FH_JSI9i_1	163.99	138.52			1.0099	0.97145	20.975	5	2	Median	1.2115	0.99132	25.056	2	1	Median	0.60795	0.71796	NaN	1	0	Median	0.99522	0.97145	NaN	1	0	Median	1.1063	1.1318	NaN	1	1	Median	244160000	126040000	118120000	80072000	34882000	45190000	52716000	36501000	16215000	53740000	27029000	26711000	57637000	27632000	30005000	39469	3602	37133	242088;242089;242090;242091;242092	324819;324820;324821;324822;324823;324824;324825;324826	324825			8	
NPSTVEAFDLAQSNSEHSR	0	Unmodified	2087.9508	0.95082456	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.89	2	12	1					3		2	5	6	5	49.698	47.227	2;3	2.8392E-33	40456	160511_QHF_FH_JSI11i_2	229.54	214.98			0.91569	0.98675	59.298	18	12	Median	0.89584	0.76107	37.063	2	1	Median	0.85222	1.046	64.71	5	4	Median	0.97135	0.96442	73.08	6	4	Median	1.0657	1.1979	56.056	5	3	Median	2918600000	1342200000	1576500000	365680000	170670000	195020000	558890000	316460000	242430000	1395700000	558050000	837610000	598400000	296980000	301410000	39470	241	37134	242093;242094;242095;242096;242097;242098;242099;242100;242101;242102;242103;242104;242105;242106;242107;242108;242109;242110	324827;324828;324829;324830;324831;324832;324833;324834;324835;324836;324837;324838;324839;324840;324841;324842;324843;324844;324845;324846;324847;324848;324849	324839			23	
NPSVNWK	1	Unmodified	843.4239	0.42390173	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	23.021	22.179	2	0.032748	18498	160511_QHF_FH_JSI12i_2	50.966	35.527			1.0657	0.90977	36.835	3	0	Median	1.0657	0.90977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64042	0.64849	NaN	1	0	Median	1.219	1.3537	NaN	1	0	Median	243150000	121470000	121680000	85390000	31773000	53617000	0	0	0	83868000	49766000	34103000	73892000	39928000	33964000	39471	1844	37135	242111;242112;242113	324850;324851	324850			2	
NPTDAYLDAMMNEAPGPINFTMFLTMFGEK	1	Unmodified	3365.5117	0.51167874	223	O14950	MYL12B	Myosin regulatory light chain 12B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.98	94.528	3	1.667E-29	56851	160513_QHF_FH_JSI10Kac_6	131.03	126.63			0.95164	0.95859	7.4639	2	0	Median	1.0366	0.90931	NaN	1	0	Median	0.87365	1.0105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	220250000	118790000	101450000	29318000	14306000	15012000	190930000	104490000	86443000	0	0	0	0	0	0	39472	223	37136	242114;242115	324852;324853;324854	324853			3	
NPTDEYLDAMMNEAPGPINFTMFLTMFGEK	1	Unmodified	3423.5172	0.51715805	1151	P19105	MYL12A	Myosin regulatory light chain 12A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.93	96.205	3	1.1524E-15	56834	160513_QHF_FH_JSI10Kac_6	125.47	120.04			0.57587	0.69146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57587	0.69146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63837000	47404000	16433000	0	0	0	63837000	47404000	16433000	0	0	0	0	0	0	39473	1151	37137	242116	324855	324855			1	
NPTDKPVIGISTYNIVPFEAGQYFNK	2	Unmodified	2911.4756	0.47560953	5742	Q9Y6N1	COX11	Cytochrome c oxidase assembly protein COX11, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	100.78	100.79	3	7.5153E-21	87392	160511_QHF_FH_JSI12i_3	132.84	126.27			1.0715	1.0479	15.908	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98026	0.93643	NaN	1	1	Median	1.1712	1.1727	NaN	1	1	Median	144920000	44702000	100210000	0	0	0	0	0	0	55767000	16958000	38810000	89148000	27744000	61404000	39474	5742	37138	242117;242118	324856;324857	324857			2	
NPTFLDYVRPR	0	Unmodified	1376.7201	0.72008375	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.4	0.49		3	2							3	1	1		62.456	61.385	3	3.8641E-06	54384	160511_QHF_FH_JSI10i_2	84.882	68.745			0.95788	0.96692	18.273	5	2	Median	1.1438	0.96692	21.95	3	2	Median	0.85313	1.0471	NaN	1	0	Median	0.81593	0.80942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	435620000	223590000	212030000	219810000	104190000	115620000	135170000	78572000	56594000	80646000	40827000	39819000	0	0	0	39475	1439	37139	242119;242120;242121;242122;242123	324858;324859;324860;324861	324861			4	
NPTIVNFPITNVDLR	0	Unmodified	1711.9257	0.92571943	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	90.842	90.398	2	4.4828E-05	80237	160511_QHF_FH_JSI10i_2	79.492	62.466			1.0943	1.2161	13.526	7	3	Median	1.2893	1.1113	NaN	1	1	Median	1.0337	1.2309	1.7098	2	1	Median	1.4827	1.4406	6.7193	2	1	Median	1.0197	1.0964	13.534	2	0	Median	202290000	86933000	115360000	23765000	9385400	14380000	58841000	28465000	30376000	70927000	24656000	46271000	48758000	24427000	24332000	39476	2856	37140	242124;242125;242126;242127;242128;242129;242130;242131	324862;324863;324864;324865;324866;324867;324868;324869;324870;324871;324872;324873;324874	324874			13	
NPTLFIFAENDVVIPLK	1	Unmodified	1929.0612	0.061150279	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		8							10	4	3	5	6	99.044	94.005	2;3	3.8974E-98	89710	160511_QHF_FH_JSI11i_2	263.59	231.99			0.99247	1.0459	93.916	16	7	Median	1.3344	1.1365	119.31	3	1	Plateau	0.57479	0.70307	22.766	2	0	Median	1.0977	1.1419	36.258	5	2	Median	0.99185	1.051	124.87	6	4	Median	4097900000	2082300000	2015600000	889340000	405880000	483460000	712670000	523730000	188950000	1378500000	684790000	693750000	1117300000	467890000	649410000	39477	4027	37141	242132;242133;242134;242135;242136;242137;242138;242139;242140;242141;242142;242143;242144;242145;242146;242147;242148;242149	324875;324876;324877;324878;324879;324880;324881;324882;324883;324884;324885;324886;324887;324888;324889;324890;324891;324892;324893;324894;324895;324896;324897;324898;324899;324900	324888			26	
NPVGYPLAWQFLR	0	Unmodified	1559.8249	0.82488317	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1		2	1	1	100.08	99.931	2	0.00015717	86061	160511_QHF_FH_JSI12i_2	83.499	66.473			0.68567	0.7059	13.743	3	0	Median	NaN	NaN	NaN	0	0	Median	0.57294	0.7059	NaN	1	0	Median	0.68567	0.68004	NaN	1	0	Median	0.8119	0.87711	NaN	1	0	Median	74458000	41357000	33101000	0	0	0	19994000	12510000	7483500	29790000	15942000	13848000	24674000	12904000	11770000	39478	5142	37142	242150;242151;242152;242153	324901;324902;324903;324904	324902			4	
NPVIAQK	1	Unmodified	768.44939	0.4493882	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	2	2	1	11.816	10.15	2	0.028076	6595	160513_QHF_FH_JSI11Kac_4	74.396	56.261			0.61327	0.63295	68.5	6	4	Median	1.3218	1.043	NaN	1	0	Median	0.92519	1.0936	125.68	2	2	Median	0.49591	0.48642	8.7569	2	2	Median	0.70834	0.77416	NaN	1	0	Median	3830600000	1689400000	2141300000	1116900000	411530000	705380000	1214000000	536530000	677500000	1310800000	638020000	672790000	188900000	103290000	85608000	39479	1386	37143	242154;242155;242156;242157;242158;242159	324905;324906;324907;324908;324909;324910	324908			6	
NPVLQQDAHSSVTITPQR	0	Unmodified	1990.0232	0.023201643	3008	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.74	2	7						3		3	3	4	2	42.342	39.759	2;3	5.4978E-17	34043	160511_QHF_FH_JSI12i_2	145.91	134.39			1.0049	0.9813	25.696	11	5	Median	0.93221	0.78659	8.6672	2	2	Median	0.66518	0.80712	26.538	3	2	Median	1.0754	1.0373	8.7881	4	1	Median	1.1822	1.3126	10.704	2	0	Median	689050000	367520000	321530000	91431000	57210000	34221000	188010000	106560000	81450000	243610000	128890000	114720000	166000000	74858000	91137000	39480	3008	37144	242160;242161;242162;242163;242164;242165;242166;242167;242168;242169;242170;242171	324911;324912;324913;324914;324915;324916;324917;324918;324919;324920;324921;324922;324923	324912			13	
NPVLQQVLEGR	0	Unmodified	1251.6935	0.69353465	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		63.434	62.9	2	0.00019759	54441	160511_QHF_FH_JSI11i_2	86.898	73.861			0.85619	0.85514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85619	0.85514	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40871000	21978000	18892000	0	0	0	0	0	0	40871000	21978000	18892000	0	0	0	39481	417	37145	242172;242173	324924;324925	324925			2	
NPVMELNEK	1	Unmodified	1072.5223	0.52229515	2325;4243	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	1	2	2	33.154	32.349	2	0.00018053	29135	160511_QHF_FH_JSI12i_1	86.67	66.893			1.4761	1.5305	53.282	8	1	Median	2.6851	2.2979	85.324	3	1	Median	1.2235	1.4524	NaN	1	0	Median	1.4761	1.4601	14.067	2	0	Median	1.3247	1.4081	47.903	2	0	Median	1866500000	687890000	1178600000	482770000	145500000	337270000	462560000	170200000	292360000	553820000	225960000	327860000	367310000	146230000	221080000	39482	2325;4243	37146	242174;242175;242176;242177;242178;242179;242180;242181	324926;324927;324928;324929;324930;324931;324932;324933;324934	324929			8	
NPVTIFSLATNEMWR	0	Unmodified	1777.8821	0.88214006	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	6.19		4							11	4	3	4	4	96.813	90.673	2;3	3.311E-23	48522	160513_QHF_FH_JSI11Kac_6	145.43	116.42			0.8078	0.83158	61.276	14	10	Median	0.7579	0.65122	53.415	4	3	Median	0.65837	0.78906	68.914	3	2	Median	0.86039	0.88003	95.381	3	2	Median	0.8078	0.87471	42.746	4	3	Median	2135200000	1350900000	784340000	556890000	341020000	215860000	497890000	341790000	156100000	689870000	459160000	230700000	390580000	208910000	181670000	39483	2222	37147	242182;242183;242184;242185;242186;242187;242188;242189;242190;242191;242192;242193;242194;242195;242196	324935;324936;324937;324938;324939;324940;324941;324942;324943;324944;324945;324946;324947;324948;324949;324950	324938			16	
NPVTIFSLATNEMWR	0	Oxidation (M)	1793.8771	0.87705468	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	88.465	80.885	2	0.00053421	46267	160513_QHF_FH_JSI10Kac_6	134.98	83.407			1.4775	1.6537	10.777	2	2	Median	NaN	NaN	NaN	0	0	Median	1.485	1.7847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.47	1.5324	NaN	1	1	Median	77346000	15530000	61817000	0	0	0	41875000	6705300	35169000	0	0	0	35472000	8824600	26647000	39484	2222	37147	242197;242198	324951;324952	324952		1848	2	
NPVWYQALTHGLNEEQR	0	Unmodified	2053.997	0.99698689	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.069	75.069	3	6.6441E-05	67063	160511_QHF_FH_JSI11i_3	69.125	52.819			3.5799	3.2981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5799	3.2981	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38810000	4605400	34205000	0	0	0	0	0	0	38810000	4605400	34205000	0	0	0	39485	686	37148	242199	324953;324954	324954			2	
NPVWYQALTHGLNEEQRK	1	Unmodified	2182.0919	0.09194991	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.41	3.18		6	10						1	3	9	3	2	69.544	68.303	3;4	3.0534E-07	57369	160511_QHF_FH_JSI10i_3	110.37	101.43			0.75145	0.72917	37.886	15	10	Median	0.64401	0.54862	43.181	3	2	Plateau	0.62297	0.72917	45.818	7	5	Median	0.80953	0.74515	30.286	3	1	Plateau	0.77128	0.77262	34.032	2	2	Median	1394300000	850550000	543790000	260840000	150690000	110160000	567730000	367770000	199960000	394410000	231990000	162420000	171360000	100110000	71251000	39486	686	37149	242200;242201;242202;242203;242204;242205;242206;242207;242208;242209;242210;242211;242212;242213;242214;242215;242216	324955;324956;324957;324958;324959;324960;324961;324962;324963;324964;324965;324966;324967;324968;324969;324970;324971;324972;324973;324974;324975;324976;324977;324978;324979	324962			24	
NPWSMDENLMHISYEAGILENPK	1	Unmodified	2687.236	0.23597289	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	6.31		10	2						5	4	4	5	4	97.653	95.123	2;3;4	6.4096E-142	88497	160511_QHF_FH_JSI11i_2	328.16	303.97			0.95763	1.0138	42.721	17	4	Median	1.4652	1.249	59.128	4	2	Median	0.83312	0.99238	71.247	4	1	Median	1.1179	1.0513	14.439	5	1	Median	0.94488	0.98329	5.9906	4	0	Median	8051500000	4018400000	4033100000	1046800000	448780000	597990000	2133300000	1166200000	967080000	2967200000	1321600000	1645600000	1904200000	1081800000	822410000	39487	779	37150	242217;242218;242219;242220;242221;242222;242223;242224;242225;242226;242227;242228;242229;242230;242231;242232;242233	324980;324981;324982;324983;324984;324985;324986;324987;324988;324989;324990;324991;324992;324993;324994;324995;324996;324997;324998;324999;325000;325001;325002;325003;325004;325005;325006	324994			27	
NPWSMDENLMHISYEAGILENPK	1	Oxidation (M)	2703.2309	0.23088751	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		13								1	5	3	4	93.7	93.225	3	2.5259E-08	81358	160511_QHF_FH_JSI12i_2	80.67	67.868			1.0652	1.0835	32.251	13	8	Median	1.3693	1.201	NaN	1	0	Median	0.78338	0.93513	42.569	5	4	Median	1.0891	1.0835	27.875	3	2	Median	1.0011	1.1085	33.655	4	2	Median	521710000	277430000	244280000	17977000	6170400	11807000	205180000	111320000	93860000	119470000	61089000	58376000	179090000	98857000	80236000	39488	779	37150	242234;242235;242236;242237;242238;242239;242240;242241;242242;242243;242244;242245;242246	325007;325008;325009;325010;325011;325012;325013;325014;325015;325016;325017;325018;325019;325020;325021;325022	325009		296;297	16	
NPWSMDENLMHISYEAGILENPK	1	2 Oxidation (M)	2719.2258	0.22580213	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	2	0			By MS/MS	By MS/MS	2	0		2										1	1	81.695	80.823	3	0.0056163	71069	160511_QHF_FH_JSI11i_2	31.775	28.974			1.3047	1.3548	17.709	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4873	1.5355	NaN	1	0	Median	1.1445	1.1953	NaN	1	0	Median	51651000	18433000	33218000	0	0	0	0	0	0	34861000	9938800	24923000	16789000	8494000	8295200	39489	779	37150	242247;242248	325023	325023		296;297	1	
NPYTIFHQALK	1	Unmodified	1330.7034	0.70337105	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.614	57.111	2	0.010764	49520	160511_QHF_FH_JSI11i_2	46.462	35.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39490	5532	37151	242249	325024	325024			1	
NPYYGGESASITPLEDLYK	1	Unmodified	2116.0001	6.61646E-05	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	3	3	84.119	83.699	2;3	9.3403E-18	76167	160511_QHF_FH_JSI10i_1	191.49	169.3			0.87195	0.89451	13.969	10	4	Median	1.0183	0.84202	9.2799	2	0	Median	0.8342	0.97982	17.128	3	2	Median	0.84349	0.83267	15.659	3	2	Median	0.85804	0.89306	5.5801	2	0	Median	1315600000	666660000	648950000	220310000	112980000	107330000	450900000	219530000	231370000	409980000	205690000	204290000	234430000	128470000	105960000	39491	1702	37152	242250;242251;242252;242253;242254;242255;242256;242257;242258;242259;242260	325025;325026;325027;325028;325029;325030;325031;325032;325033;325034;325035;325036;325037;325038;325039;325040;325041;325042;325043;325044;325045;325046;325047;325048;325049	325042			25	
NPYYGGESSSITPLEELYK	1	Unmodified	2146.0106	0.010630851	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.155	82.585	2	2.0896E-16	74847	160511_QHF_FH_JSI10i_1	122.34	106.58			0.78826	0.79016	19.539	3	3	Median	1.1239	0.91187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64885	0.61956	NaN	1	1	Median	0.78826	0.79016	NaN	1	1	Median	66316000	37886000	28430000	18588000	8608600	9979300	0	0	0	30670000	18663000	12007000	17058000	10614000	6443200	39492	1368	37153	242261;242262;242263;242264	325050;325051;325052;325053	325052			4	
NQAAIQGRPPYAASAEEVAK	1	Unmodified	2070.0494	0.049416394	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	39.844	39.194	3	2.6747E-06	34339	160511_QHF_FH_JSI11i_3	92.563	83.902			1.0717	1.0028	43.85	8	5	Median	1.0453	0.92032	NaN	1	0	Median	0.78321	0.97885	68.292	2	2	Median	1.3311	1.2796	22.345	2	1	Median	0.7335	0.81994	59.593	3	2	Plateau	877720000	437100000	440620000	128230000	62336000	65894000	209660000	106600000	103070000	281900000	139820000	142080000	257920000	128350000	129570000	39493	5147	37154	242265;242266;242267;242268;242269;242270;242271;242272	325054;325055;325056;325057;325058;325059;325060;325061;325062;325063;325064;325065;325066;325067;325068	325054			15	
NQAETIALEK	1	Unmodified	1115.5823	0.58225287	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0		By MS/MS			1	0	1										1			29.611	29.286	2	0.0069007	26050	160511_QHF_FH_JSI10i_1	53.751	28.177			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39494	1489;2481	37155	242273	325069	325069			1	
NQAFIEMNTEEAANTMVNYYTSVTPVLR	0	Unmodified	3205.506	0.50599974	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	101.67	101.57	3	6.5908E-42	89326	160511_QHF_FH_JSI11i_2	170.27	167.82			0.98634	1.1376	16.378	5	0	Median	1.4517	1.2361	NaN	1	0	Median	0.90914	1.1376	NaN	1	0	Median	1.1681	1.1491	31.701	2	0	Median	0.98634	1.1056	NaN	1	0	Median	1748600000	827200000	921380000	326940000	135670000	191270000	316360000	150470000	165900000	661860000	296150000	365720000	443410000	244920000	198490000	39495	1281	37156	242274;242275;242276;242277;242278	325070;325071;325072	325071			3	
NQAIEELEK	1	Unmodified	1072.5401	0.5400537	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.289	31.691	2	3.5787E-05	28138	160511_QHF_FH_JSI10i_1	99.802	45.191			0.92833	0.8005	76.165	5	2	Median	0.92833	0.75112	NaN	1	0	Median	0.67198	0.8005	NaN	1	0	Median	2.1203	2.0623	NaN	1	1	Median	0.58103	0.61092	113.94	2	1	Median	1212200000	708010000	504140000	230740000	115850000	114890000	297000000	166020000	130980000	266440000	151340000	115100000	417960000	274790000	143170000	39496	5206	37157	242279;242280;242281;242282;242283	325073;325074;325075;325076;325077	325076			5	
NQALFPACVLK	1	Unmodified	1259.6696	0.66962808	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1.75	0.433	1	3									1	2	1	69.559	68.786	2	0.00083886	62403	160511_QHF_FH_JSI11i_1	79.474	64.323			0.99597	1.0119	17.66	4	1	Median	NaN	NaN	NaN	0	0	Median	0.82749	1.0212	NaN	1	0	Median	0.99597	0.97958	3.2854	2	1	Median	1.3192	1.408	NaN	1	0	Median	154660000	74893000	79770000	0	0	0	31059000	13073000	17986000	82716000	48014000	34701000	40889000	13805000	27083000	39497	3828	37158	242284;242285;242286;242287	325078;325079	325078			1	
NQALNIAWQK	1	Unmodified	1184.6302	0.63020611	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	51.541	50.296	2	1.8331E-05	42976	160511_QHF_FH_JSI12i_2	98.933	80.671			0.96604	1.0876	88.74	3	2	Median	NaN	NaN	NaN	0	0	Median	0.80891	0.98518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0498	2.2854	105.02	2	1	Median	896770000	184470000	712300000	0	0	0	225990000	78788000	147200000	0	0	0	670780000	105680000	565100000	39498	679	37159	242288;242289;242290	325080;325081;325082	325080			3	
NQALNTDNYGHDLASVQALQR	0	Unmodified	2327.1254	0.12543488	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	60.166	59.418	3	9.631E-19	51628	160511_QHF_FH_JSI11i_2	153.21	146.26			0.90095	1.0166	22.823	6	1	Median	0.84656	0.72608	NaN	1	0	Median	0.77539	0.92882	7.9804	2	1	Median	1.273	1.2451	20.523	2	0	Median	0.95882	1.0515	NaN	1	0	Median	472780000	236110000	236670000	86730000	41736000	44994000	136080000	79228000	56852000	169980000	70193000	99789000	79989000	44957000	35032000	39499	2470	37160	242291;242292;242293;242294;242295;242296	325083;325084;325085;325086;325087;325088;325089;325090;325091;325092;325093	325091			11	
NQANPSRQPGSVPR	0	Unmodified	1506.7651	0.76513646	2416	Q13443	ADAM9	Disintegrin and metalloproteinase domain-containing protein 9	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				9.9786	9.3354	3	0.056849	6968	160511_QHF_FH_JSI9i_3	23.831	16.461			2.037	1.7125	NaN	1	1	Median	2.037	1.7125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12202000	2952200	9249900	12202000	2952200	9249900	0	0	0	0	0	0	0	0	0	39500	2416	37161	242297	325094	325094			1	
NQAPPGLYTK	1	Unmodified	1087.5662	0.56620887	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	5.78	4	4	3		1	3	3	1		3	6	5	5	28.7	24.506	2	1.65E-05	21703	160511_QHF_FH_JSI12i_1	101.65	89.877			0.8658	0.94633	12.946	19	1	Median	1.2705	1.2133	8.8822	3	0	Plateau	0.82992	0.97579	7.8123	6	0	Median	0.81856	0.81165	9.3569	5	1	Median	0.8946	0.94633	7.4945	5	0	Median	15591000000	7527400000	8063900000	3695500000	1358800000	2336700000	3752400000	2127100000	1625300000	3312000000	1514100000	1798000000	4831400000	2527400000	2304000000	39501	779	37162	242298;242299;242300;242301;242302;242303;242304;242305;242306;242307;242308;242309;242310;242311;242312;242313;242314;242315;242316	325095;325096;325097;325098;325099;325100;325101;325102;325103;325104;325105;325106;325107;325108;325109;325110;325111;325112;325113;325114;325115;325116;325117;325118;325119;325120;325121;325122;325123;325124;325125;325126;325127;325128;325129;325130;325131;325132;325133;325134;325135;325136;325137;325138;325139;325140	325106			46	
NQAVNFLR	0	Unmodified	960.51411	0.51411372	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.17	5.3	1	4							1	1	1	3	1	38.837	38.015	2	0.0026724	32482	160511_QHF_FH_JSI12i_2	90.706	63.452			0.79933	0.87522	9.5632	5	0	Median	1.0228	0.87522	NaN	1	0	Median	0.76783	0.9475	NaN	1	0	Median	0.89862	0.88642	14.695	2	0	Median	0.70961	0.79855	NaN	1	0	Median	791750000	444810000	346940000	120610000	59214000	61391000	221050000	134850000	86196000	292740000	166510000	126230000	157350000	84237000	73117000	39502	3240	37163	242317;242318;242319;242320;242321;242322	325141;325142;325143;325144;325145	325142			5	
NQAVQFISALVDELK	1	Unmodified	1673.8988	0.89883598	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.87	102.76	3	0.020845	90553	160511_QHF_FH_JSI11i_2	46.319	34.705			0.92153	0.87572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92153	0.87572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16907000	9335400	7571500	0	0	0	0	0	0	16907000	9335400	7571500	0	0	0	39503	1542	37164	242323	325146	325146			0	
NQCTQVVQER	0	Unmodified	1260.5881	0.5880833	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	11.848	11.445	2	1.7081E-07	9101	160511_QHF_FH_JSI11i_1	118.67	72.541			1.3534	1.3079	19.19	4	2	Median	1.6045	1.3133	NaN	1	1	Median	1.0989	1.3025	NaN	1	0	Median	1.1415	1.1203	NaN	1	0	Median	1.7037	1.7713	NaN	1	1	Median	487160000	195610000	291550000	74526000	32870000	41655000	123700000	32424000	91278000	121200000	56660000	64537000	167740000	73654000	94083000	39504	1085	37165	242324;242325;242326;242327;242328	325147;325148;325149;325150;325151;325152	325148			6	
NQDATVYVGGLDEK	1	Unmodified	1507.7155	0.71545188	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	1	2	4	47.793	45.638	2;3	1.1177E-10	41345	160511_QHF_FH_JSI12i_1	154.36	139.4			1.0103	1.0407	77.141	6	2	Median	0.97315	0.79115	NaN	1	0	Median	1.0471	1.219	NaN	1	0	Median	0.76506	0.74332	45.005	2	1	Median	2.1917	2.3376	111.85	2	1	Median	1683800000	763270000	920480000	294530000	155580000	138950000	375680000	197650000	178030000	410090000	180660000	229430000	603450000	229380000	374070000	39505	2671	37166	242329;242330;242331;242332;242333;242334;242335;242336	325153;325154;325155;325156;325157;325158;325159;325160;325161;325162;325163;325164;325165;325166;325167	325156			15	
NQDDADRAQK	1	Unmodified	1159.5218	0.52177787	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	1.4016	1.173	3	0.0034247	699	160511_QHF_FH_JSI12i_1	50.284	33.258			1.7828	1.7709	189.64	4	4	Median	NaN	NaN	NaN	0	0	Median	2.1602	2.5065	271.24	2	2	Median	0.5073	0.48914	NaN	1	1	Median	6.2654	6.4114	NaN	1	1	Median	83217000	35649000	47568000	0	0	0	37069000	16089000	20980000	19659000	14992000	4667400	26489000	4568100	21921000	39506	587	37167	242337;242338;242339;242340;242341	325168;325169;325170;325171;325172	325170			5	
NQDEESQEAPELLK	1	Unmodified	1628.753	0.7529596	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	42.701	40.3	2	1.1319E-29	36412	160511_QHF_FH_JSI11i_1	213.73	197.48			1.0051	0.9837	11.39	5	0	Median	1.0051	0.84084	NaN	1	0	Median	0.82752	0.9837	NaN	1	0	Median	1.1167	1.0926	7.2754	2	0	Median	0.93428	0.96927	NaN	1	0	Median	1710400000	888260000	822130000	341940000	173070000	168870000	441270000	243520000	197750000	437790000	210530000	227260000	489400000	261140000	228260000	39507	3634	37168	242342;242343;242344;242345;242346	325173;325174;325175;325176;325177;325178;325179;325180;325181;325182;325183;325184;325185;325186;325187;325188;325189	325176			17	
NQDEINK	1	Unmodified	859.40356	0.40356022	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	1	1	3	7.8525	3.4759	2	0.00605	3536	160511_QHF_FH_JSI12i_1	94.262	49.651			0.88165	0.88604	41.78	6	1	Median	1.2715	1.0479	16.743	2	0	Median	0.5109	0.6053	NaN	1	0	Median	1.0155	0.99055	NaN	1	0	Median	0.51717	0.56088	57.674	2	1	Median	3086000000	1644200000	1441800000	753330000	328040000	425290000	860710000	511560000	349150000	776730000	365520000	411210000	695190000	439090000	256100000	39508	3876	37169	242347;242348;242349;242350;242351;242352;242353	325190;325191;325192;325193;325194;325195;325196;325197	325192			8	
NQDEQEIPFR	0	Unmodified	1274.5891	0.58912916	3129	Q6PK04	CCDC137	Coiled-coil domain-containing protein 137	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		38.914	37.698	2	0.015531	33795	160511_QHF_FH_JSI11i_1	45.022	25.245			0.67689	0.57555	NaN	1	1	Median	0.67689	0.57555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29013000	12850000	16162000	29013000	12850000	16162000	0	0	0	0	0	0	0	0	0	39509	3129	37170	242354;242355	325198;325199	325198			2	
NQDETEDTELQGMNEYLSSFK	1	Unmodified	2477.054	0.054028583	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	89.123	88.658	3	1.5053E-05	80703	160511_QHF_FH_JSI12i_1	75.773	63.693			3.2287	3.2003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2287	3.2003	NaN	1	1	Median	13416000	2519000	10897000	0	0	0	0	0	0	0	0	0	13416000	2519000	10897000	39510	2578	37171	242356	325200;325201	325201			2	
NQDFSSFDDTGK	1	Unmodified	1359.5579	0.55788861	3672	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36	35.407	2	0.00020288	32063	160511_QHF_FH_JSI12i_1	79.693	64.064			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39511	3672	37172	242357	325202	325202			1	
NQDLALSNLESIPGGYNALR	0	Unmodified	2144.0862	0.08619583	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		88.02	87.66	2	0.0011292	79854	160511_QHF_FH_JSI11i_1	73.022	61.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39512	5299	37173	242358	325203	325203			1	
NQDLALSNLESIPGGYNALRR	0	Unmodified	2300.1873	0.18730686	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.676	78.676	3	0.022037	70253	160511_QHF_FH_JSI11i_3	30.587	21.768			0.76595	0.70841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76595	0.70841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	88187000	52444000	35743000	0	0	0	0	0	0	88187000	52444000	35743000	0	0	0	39513	5299	37174	242359	325204	325204			1	
NQDLAPNSAEQASILSLVTK	1	Unmodified	2098.0906	0.090612506	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				91.566	90.784	3	1.5235E-05	80727	160511_QHF_FH_JSI9i_1	67.864	59.642			0.97731	0.81052	NaN	1	0	Median	0.97731	0.81052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44356000	23799000	20557000	44356000	23799000	20557000	0	0	0	0	0	0	0	0	0	39514	2324	37175	242360	325205;325206	325205			2	
NQDNLQGWNK	1	Unmodified	1215.5632	0.56324876	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			1	2	2	2	27.026	24.961	2	1.5535E-08	22239	160511_QHF_FH_JSI12i_1	117.89	98.753			1.9348	2.1365	43.229	6	5	Median	3.6566	3.0056	NaN	1	1	Median	1.7074	2.0418	20.108	2	2	Median	1.4402	1.4029	69.823	2	1	Median	1.8569	1.9859	NaN	1	1	Median	974110000	392700000	581420000	109890000	19620000	90269000	270520000	101540000	168980000	331600000	170960000	160640000	262100000	100570000	161530000	39515	1342	37176	242361;242362;242363;242364;242365;242366;242367	325207;325208;325209;325210;325211;325212;325213	325209			7	
NQDSVVNGTEAEVK	1	Unmodified	1488.7056	0.70561548	381	O43815	STRN	Striatin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.365	27.053	2	0.00048718	23920	160511_QHF_FH_JSI10i_1	94.402	79.069			0.14942	0.17028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14942	0.17028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21793000	20470000	1322500	0	0	0	21793000	20470000	1322500	0	0	0	0	0	0	39516	381	37177	242368	325214	325214			1	
NQDVSISNVQPK	1	Unmodified	1327.6732	0.67319314	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.894	30.322	2	0.0091965	27264	160511_QHF_FH_JSI12i_1	47.977	35.361			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39517	4059	37178	242369	325215	325215			1	
NQEILDDTAK	1	Unmodified	1145.5564	0.55643205	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			25.446	24.677	2	0.00093589	21346	160511_QHF_FH_JSI9i_1	81.338	69.101			6.6015	6.4024	11.114	2	2	Median	7.2297	5.9185	NaN	1	1	Median	6.0278	6.9259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78850000	8484700	70366000	43189000	3801800	39387000	35662000	4682900	30979000	0	0	0	0	0	0	39518	2899	37179	242370;242371	325216;325217	325217			2	
NQEQEKVER	1	Acetyl (K)	1200.5735	0.57347909	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	13.246	6.0582	2	0.0054165	5669	160513_QHF_FH_JSI11Kac_3	72.928	48.898			0.51037	0.51983	60.453	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3508	0.33901	NaN	1	0	Median	0.74253	0.79709	NaN	1	0	Median	5149900	3432500	1717400	0	0	0	0	0	0	3543100	2480500	1062600	1606800	951970	654810	39519	40	37180	242372;242373	325218	325218	12		1	
NQEQLAAELAEFTAK	1	Unmodified	1661.8261	0.82606496	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.52	0.5	15	16								8	8	7	8	86.073	85.506	2;3	4.5634E-44	76439	160511_QHF_FH_JSI9i_1	174.39	120.71			0.99014	1.0703	104.46	30	30	Median	2.0383	1.7344	100.77	7	7	Median	0.97036	1.1857	100.79	8	8	Median	0.40348	0.40682	141.99	7	7	Median	0.90317	0.97235	93.804	8	8	Median	2172100000	1069400000	1102700000	367210000	142630000	224580000	646600000	330130000	316470000	525600000	278100000	247500000	632680000	318500000	314180000	39520	1426	37181	242374;242375;242376;242377;242378;242379;242380;242381;242382;242383;242384;242385;242386;242387;242388;242389;242390;242391;242392;242393;242394;242395;242396;242397;242398;242399;242400;242401;242402;242403;242404	325219;325220;325221;325222;325223;325224;325225;325226;325227;325228;325229;325230;325231;325232;325233;325234;325235;325236;325237;325238;325239;325240;325241;325242;325243;325244;325245;325246;325247;325248;325249;325250;325251;325252;325253;325254;325255;325256;325257;325258;325259;325260;325261;325262;325263;325264;325265;325266;325267;325268	325249			50	
NQEYIAK	1	Unmodified	864.43413	0.43413207	2549;2546	Q14571;Q14643	ITPR2;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0			By MS/MS		1	0	2											2		11.46	11.33	2	0.039594	9028	160511_QHF_FH_JSI11i_1	49.59	11.457			0.29986	0.29019	295.03	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29986	0.29019	295.03	2	2	Median	NaN	NaN	NaN	0	0	Median	88869000	48407000	40462000	0	0	0	0	0	0	88869000	48407000	40462000	0	0	0	39521	2546;2549	37182	242405;242406	325269;325270	325270			2	
NQFETEINITK	1	Unmodified	1335.667	0.66704513	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	51.919	51.423	2	2.2889E-07	46680	160511_QHF_FH_JSI12i_1	121.9	92.155			0.76003	0.89392	11.314	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76003	0.89392	NaN	1	0	Median	1.0467	1.0289	NaN	1	0	Median	1.1058	1.1182	NaN	1	0	Median	595990000	337660000	258330000	0	0	0	234040000	147690000	86351000	182640000	108290000	74354000	179310000	81685000	97624000	39522	1085	37183	242407;242408;242409	325271;325272	325272			2	
NQGATCYMNSLLQTLFFTNQLRK	1	Unmodified	2747.3523	0.35234005	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.085	90.364	3	2.1241E-29	52241	160513_QHF_FH_JSI10Kac_6	153.83	141.15			0.8567	1.0336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8567	1.0336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269500000	150580000	118930000	0	0	0	269500000	150580000	118930000	0	0	0	0	0	0	39523	3922	37184	242410	325273;325274	325273			2	
NQGDEEGTEIDTLQFR	0	Unmodified	1850.8282	0.82824981	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	57.814	57.163	2	1.7174E-21	51575	160511_QHF_FH_JSI10i_1	170	155.85			1.039	1.2108	6.8998	4	0	Linear	1.6365	1.3144	NaN	1	0	Median	0.9971	1.1687	NaN	1	0	Median	1.3238	1.2543	NaN	1	0	Median	1.1044	1.1276	NaN	1	0	Median	296950000	138010000	158950000	59645000	22027000	37617000	83564000	40733000	42831000	72102000	31885000	40218000	81642000	43360000	38282000	39524	260	37185	242411;242412;242413;242414	325275;325276;325277;325278;325279	325276			5	
NQGFDVVLVDTAGR	0	Unmodified	1489.7525	0.75250609	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.75	5.36	1	2					1				1	1	2	71.964	67.814	2	0.00074428	60071	160511_QHF_FH_JSI11i_2	88.021	63.229			0.89432	0.87319	16.584	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.89432	1.0549	NaN	1	0	Median	0.7771	0.7707	NaN	1	1	Median	0.90401	0.98931	NaN	1	1	Median	54763000	30639000	24124000	0	0	0	6352700	3405300	2947300	26153000	15520000	10634000	22257000	11714000	10543000	39525	899	37186	242415;242416;242417;242418	325280;325281;325282;325283	325283			4	
NQGGGLSSSGAGEGQGPK	1	Unmodified	1586.7285	0.72847619	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.58	8	2	1			6				3	4	5	5	14.206	11.032	2;3	1.6315E-22	9200	160511_QHF_FH_JSI9i_1	170.26	164.16			0.94383	1.0272	30.947	15	3	Median	1.4323	1.1901	20.822	2	0	Median	0.83041	0.97837	19.12	4	1	Median	0.98369	0.95446	7.9524	4	0	Median	1.0173	1.0655	49.652	5	2	Median	2252700000	1098900000	1153800000	512940000	239520000	273420000	533280000	253300000	279980000	557980000	286570000	271420000	648510000	319550000	328960000	39526	878	37187	242419;242420;242421;242422;242423;242424;242425;242426;242427;242428;242429;242430;242431;242432;242433;242434;242435	325284;325285;325286;325287;325288;325289;325290;325291;325292;325293;325294;325295;325296;325297;325298;325299;325300;325301;325302;325303;325304;325305	325300			22	
NQGGGLSSSGAGEGQGPKK	2	Unmodified	1714.8234	0.8234392	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.751	7	10	6							4	6	8	5	9.2678	8.9553	2;3	3.5357E-32	6688	160511_QHF_FH_JSI11i_3	148.52	130.38			1.1549	1.1944	32.194	19	6	Median	1.2394	1.0213	6.4427	3	0	Plateau	1.1721	1.4137	17.566	5	3	Median	0.93665	0.91879	35.049	6	2	Median	1.2344	1.2847	20.688	5	1	Median	3077700000	1468700000	1609000000	493640000	225150000	268490000	749410000	362700000	386720000	1031900000	504630000	527290000	802710000	376190000	426520000	39527	878	37188	242436;242437;242438;242439;242440;242441;242442;242443;242444;242445;242446;242447;242448;242449;242450;242451;242452;242453;242454;242455;242456;242457;242458	325306;325307;325308;325309;325310;325311;325312;325313;325314;325315;325316;325317;325318;325319;325320;325321;325322;325323;325324;325325;325326;325327;325328;325329;325330;325331;325332;325333;325334;325335;325336;325337;325338;325339;325340	325310			35	
NQGGSSWEAPYSR	0	Unmodified	1437.6273	0.62730558	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	31.794	31.145	2	0.00014215	26260	160511_QHF_FH_JSI11i_2	84.507	70.916			1.3292	1.2946	21.106	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2211	1.1972	18.355	2	0	Median	0.84621	0.89738	NaN	1	0	Median	74904000	31845000	43059000	0	0	0	0	0	0	57642000	22944000	34699000	17261000	8900900	8360400	39528	2880	37189	242459;242460;242461	325341;325342;325343;325344;325345;325346	325345			6	
NQGGYGGSSSSSSYGSGR	0	Unmodified	1693.6928	0.69281896	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.67	7	4	4			2	4	1		4	5	7	6	12.069	9.2383	2;3	8.3861E-41	7812	160511_QHF_FH_JSI11i_1	199.38	195.65			1.0251	1.0381	14.358	22	0	Median	1.1833	0.9952	9.2276	4	0	Median	0.84211	1.0405	9.2726	5	0	Median	1.0798	1.0647	17.56	7	0	Median	0.86303	0.95208	18.016	6	0	Median	8159300000	4201700000	3957600000	1646600000	675420000	971150000	2342800000	1350900000	991920000	1892800000	910780000	982040000	2277100000	1264600000	1012500000	39529	936	37190	242462;242463;242464;242465;242466;242467;242468;242469;242470;242471;242472;242473;242474;242475;242476;242477;242478;242479;242480;242481;242482;242483	325347;325348;325349;325350;325351;325352;325353;325354;325355;325356;325357;325358;325359;325360;325361;325362;325363;325364;325365;325366;325367;325368;325369;325370;325371;325372;325373;325374;325375;325376;325377;325378;325379;325380;325381;325382	325349			36	
NQGIEEALK	1	Unmodified	1000.5189	0.51892433	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	1	3	32.253	28.605	2	0.00017576	25488	160511_QHF_FH_JSI12i_1	104.44	85.661			2.9859	3.2431	94.761	5	5	Median	NaN	NaN	NaN	0	0	Median	3.2169	3.9114	NaN	1	1	Median	2.3888	2.2871	NaN	1	1	Median	3.2822	3.465	122.93	3	3	Plateau	887140000	410510000	476630000	0	0	0	274920000	117770000	157150000	310440000	151540000	158900000	301770000	141200000	160580000	39530	1139	37191	242484;242485;242486;242487;242488	325383;325384;325385;325386;325387	325384			5	
NQGLTVFETGQK	1	Unmodified	1320.6674	0.66737948	424	O60508	CDC40	Pre-mRNA-processing factor 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.197	44.552	2	0.011632	40484	160511_QHF_FH_JSI12i_1	55.721	42.684			2.5209	2.5937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5209	2.5937	NaN	1	1	Median	19010000	6567600	12442000	0	0	0	0	0	0	0	0	0	19010000	6567600	12442000	39531	424	37192	242489	325388	325388			1	
NQGPQESVVRK	1	Unmodified	1240.6524	0.65239812	416	O60437	PPL	Periplakin	yes	yes	0	0	0	1		By MS/MS		By matching	2	0		2									1		1	10.244	9.649	3	0.041039	7571	160511_QHF_FH_JSI10i_2	22.046	14.121			0.72421	0.84139	21.818	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81704	0.98174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64192	0.7211	NaN	1	0	Median	41308000	22797000	18511000	0	0	0	26006000	14190000	11816000	0	0	0	15301000	8606700	6694700	39532	416	37193	242490;242491	325389	325389			1	
NQGYYDYVK	1	Unmodified	1148.5138	0.51383895	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1				2	2	2	35.073	32.274	2	0.00059224	29077	160511_QHF_FH_JSI12i_1	82.279	56.542			0.97586	1.0317	34.123	4	2	Median	NaN	NaN	NaN	0	0	Median	0.7945	0.91681	NaN	1	1	Median	1.4615	1.4427	30.715	2	0	Median	0.79531	0.8343	NaN	1	1	Median	807080000	380790000	426280000	0	0	0	328240000	121810000	206430000	276950000	158330000	118620000	201880000	100650000	101230000	39533	2185	37194	242492;242493;242494;242495;242496;242497	325390;325391;325392;325393;325394;325395;325396	325393			7	
NQGYYDYVKPR	1	Acetyl (K)	1443.6783	0.67827852	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	54.885	44.193	2	8.2038E-05	25159	160513_QHF_FH_JSI12Kac_4	98.048	89.516			0.56887	1.0903	41.879	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0148	1.2039	NaN	1	0	Median	0.56874	0.55752	NaN	1	0	Median	1.018	1.0903	NaN	1	0	Median	16347000	9873700	6473400	0	0	0	3585800	1945200	1640500	9273500	6032700	3240800	3487900	1895700	1592100	39534	2185	37195	242498;242499;242500	325397;325398;325399;325400	325400	2299		4	
NQHFEVPFIAFYR	0	Unmodified	1666.8256	0.82561145	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	85.231	75.85	3	0.0015428	40450	160513_QHF_FH_JSI12Kac_6	53.869	47.14			0.42685	0.42799	7.325	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47147	0.45075	NaN	1	1	Median	0.38645	0.40639	NaN	1	0	Median	154060000	121020000	33039000	0	0	0	0	0	0	82193000	63977000	18216000	71867000	57044000	14823000	39535	3212	37196	242501;242502	325401;325402	325402			2	
NQHLVSQQK	1	Unmodified	1080.5676	0.56760585	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.4		8							1	2	3	2	2	6.4574	5.3046	2;3	0.00042465	3807	160511_QHF_FH_JSI11i_2	90.709	67.969			0.97512	1.1588	190.52	8	8	Median	0.79702	0.68695	181.36	2	2	Median	0.97512	1.1882	110.96	2	2	Median	0.24742	0.25005	55.283	2	2	Median	16.447	17.77	81.69	2	2	Median	560260000	341220000	219040000	67475000	26543000	40932000	205900000	145830000	60064000	184260000	158240000	26018000	102630000	10600000	92025000	39536	1016	37197	242503;242504;242505;242506;242507;242508;242509;242510;242511	325403;325404;325405;325406;325407;325408;325409;325410;325411	325407			9	
NQIGNQNK	1	Unmodified	914.45699	0.45699277	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.5725	4.4732	2	0.0051219	2165	160511_QHF_FH_JSI11i_1	74.415	38.535			1.386	1.3028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.386	1.3028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64304000	31097000	33208000	0	0	0	0	0	0	64304000	31097000	33208000	0	0	0	39537	2627	37198	242512	325412	325412			1	
NQIIACNGSIQSIPEIPDDLK	1	Unmodified	2324.1682	0.1682109	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	86.259	85.859	2;3	3.8248E-29	78226	160511_QHF_FH_JSI11i_1	182.57	161.62			0.82796	0.86138	24.001	7	0	Median	0.82796	0.68712	NaN	1	0	Median	0.8035	0.9261	10.246	2	0	Median	0.77714	0.75331	7.4998	2	0	Median	1.1836	1.2261	2.9912	2	0	Median	311880000	159390000	152490000	23833000	10462000	13371000	73889000	43007000	30882000	105340000	66447000	38895000	108820000	39478000	69340000	39538	1242	37199	242513;242514;242515;242516;242517;242518;242519	325413;325414;325415;325416;325417;325418;325419;325420;325421;325422;325423;325424;325425;325426;325427;325428;325429	325416			17	
NQIIFAVR	0	Unmodified	959.55525	0.55525025	760	O96033	MOCS2	Molybdopterin synthase sulfur carrier subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.8	0.4								1	4	1	2	1	1	60.401	50.875	2	0.0094136	27016	160513_QHF_FH_JSI9Kac_6	68.915	36.444			0.88934	1.0998	34.269	4	0	Linear	1.2159	0.98841	NaN	1	0	Median	0.70497	0.83249	57.377	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75333	0.82373	NaN	1	0	Median	49795000	24897000	24898000	15629000	6999400	8629100	21289000	11316000	9972800	0	0	0	12878000	6581500	6296300	39539	760	37200	242520;242521;242522;242523;242524	325430;325431	325431			2	
NQILSQQLQQMEAEHNTLR	0	Unmodified	2280.1281	0.12807742	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		65.187	64.639	3	1.0116E-10	56369	160511_QHF_FH_JSI11i_2	121.77	101.4			0.9383	0.94603	101.83	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9383	0.94603	101.83	2	2	Median	NaN	NaN	NaN	0	0	Median	156290000	65888000	90401000	0	0	0	0	0	0	156290000	65888000	90401000	0	0	0	39540	2574	37201	242525;242526	325432;325433	325433			2	
NQILSVLAGLAAMVGYALLSGIVSIQR	0	Unmodified	2756.5623	0.56225647	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			109.06	103.34	3	2.6677E-11	61053	160513_QHF_FH_JSI10Kac_6	124.79	117.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6190300	6190300	0	0	0	0	6190300	6190300	0	0	0	0	0	0	0	39541	2429	37202	242527	325434	325434			1	
NQIQDAR	0	Unmodified	843.41988	0.41987898	4830	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	5.8128	5.5207	2	0.015081	3545	160511_QHF_FH_JSI12i_1	57.281	24.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39542	4830	37203	242528;242529	325435;325436	325435			2	
NQIQDARK	1	Unmodified	971.51484	0.514842	4830	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			5.3432	4.9362	2	0.0064457	2970	160511_QHF_FH_JSI10i_2	62.88	41.58			0.79199	0.98336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79199	0.98336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67264000	37377000	29887000	0	0	0	67264000	37377000	29887000	0	0	0	0	0	0	39543	4830	37204	242530	325437	325437			1	
NQIQDQEQLVSK	1	Unmodified	1428.7209	0.72087161	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.951	30.68	2	0.0028777	26823	160511_QHF_FH_JSI9i_1	68.536	41.421			1.1883	0.97036	NaN	1	1	Median	1.1883	0.97036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17807000	6826000	10981000	17807000	6826000	10981000	0	0	0	0	0	0	0	0	0	39544	1660	37205	242531	325438	325438			1	
NQITQLESLK	1	Unmodified	1172.6401	0.6401021	2849	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			50.156	49.736	2	0.0057423	44817	160511_QHF_FH_JSI10i_1	63.184	20.897			1.3306	1.5079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3306	1.5079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31916000	15721000	16195000	0	0	0	31916000	15721000	16195000	0	0	0	0	0	0	39545	2849	37206	242532	325439	325439			1	
NQKDPGVLDR	1	Acetyl (K)	1182.5993	0.59929991	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		35.09	26.203	2	0.049134	15455	160513_QHF_FH_JSI11Kac_3	50.194	23.752			0.054896	0.053952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.054896	0.053952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7898300	7347600	550750	0	0	0	0	0	0	7898300	7347600	550750	0	0	0	39546	1387	37207	242533	325440	325440			1	
NQKLTATTQK	2	Acetyl (K)	1173.6354	0.63535107	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	1				1	1	3	3			1	3	1	3	21.958	12.968	2	1.7273E-17	5462	160513_QHF_FH_JSI9Kac_3	170.5	153.4			1.0583	0.98774	21.112	2	1	Median	1.048	0.85076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0686	1.1468	NaN	1	1	Median	283540000	86453000	197090000	146620000	62870000	83749000	63104000	19693000	43411000	1429100	0	1429100	72391000	3890600	68501000	39547	1016	37208	242534;242535;242536;242537;242538;242539;242540;242541	325441;325442;325443;325444;325445;325446;325447;325448	325443	825		8	
NQKPEVR	1	Unmodified	869.47191	0.47191456	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		4.762	4.5679	3	0.034683	2306	160511_QHF_FH_JSI11i_2	37.558	21.404			0.98127	0.98332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98127	0.98332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155120000	71036000	84087000	0	0	0	0	0	0	155120000	71036000	84087000	0	0	0	39548	2120	37209	242542	325449	325449			1	
NQLDQEVEFLSTSIAQLK	1	Unmodified	2062.0582	0.058249746	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	101.9	101.78	3	4.3178E-09	92589	160511_QHF_FH_JSI10i_1	134.37	118.95			0.98294	0.97792	18.68	6	3	Median	1.0855	0.89274	NaN	1	0	Median	1.0067	1.2306	NaN	1	0	Median	0.85086	0.84698	6.7225	2	2	Median	1.0647	1.1635	11.69	2	1	Median	1397700000	747650000	650090000	54318000	28548000	25771000	278150000	133330000	144810000	441360000	273350000	168010000	623910000	312420000	311490000	39549	4274	37210	242543;242544;242545;242546;242547;242548;242549	325450;325451;325452;325453;325454;325455;325456;325457	325454			8	
NQLELAAR	0	Unmodified	913.49813	0.49812931	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	25.005	24.191	2	0.0055642	20081	160511_QHF_FH_JSI11i_2	65.252	42.233			0.72589	0.82635	35.155	5	0	Median	0.9498	0.82635	NaN	1	0	Median	0.72589	0.89122	NaN	1	0	Median	0.8485	0.86979	NaN	1	0	Median	0.5104	0.54754	49.417	2	0	Median	532910000	283410000	249500000	98083000	41801000	56283000	86421000	48514000	37907000	187740000	95955000	91785000	160660000	97139000	63523000	39550	2625	37211	242550;242551;242552;242553;242554	325458;325459;325460;325461;325462	325461			5	
NQLESLQR	0	Unmodified	986.51451	0.51450765	89	L0R6Q1	SLC35A4		yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	20.545	20.081	2	0.00068707	17098	160511_QHF_FH_JSI9i_2	95.352	52.106			1.0223	1.1401	21.358	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0229	1.2173	NaN	1	1	Median	1.208	1.1854	30.148	2	1	Median	0.90791	0.98205	21.101	2	1	Median	348100000	181290000	166810000	0	0	0	76191000	36613000	39577000	131390000	66086000	65308000	140520000	78595000	61921000	39551	89	37212	242555;242556;242557;242558;242559;242560;242561;242562	325463;325464;325465;325466;325467;325468;325469;325470	325467			8	
NQLIEQFPGIEPWLNQIMPK	1	Unmodified	2394.2406	0.24058798	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	102.32	102.21	3	1.5929E-06	90023	160511_QHF_FH_JSI11i_2	94.057	86.254			0.72825	0.89795	9.7232	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.70306	0.87874	NaN	1	0	Median	1.0481	1.0496	NaN	1	1	Median	0.96074	1.0285	NaN	1	0	Median	293300000	139870000	153440000	0	0	0	103950000	60203000	43751000	106950000	40862000	66091000	82396000	38801000	43595000	39552	5395	37213	242563;242564;242565	325471;325472;325473	325472			3	
NQLKETTEAACR	1	Acetyl (K)	1461.6882	0.68819128	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				1	1	3	34.835	25.911	2	5.1311E-12	15221	160513_QHF_FH_JSI12Kac_3	125.74	111.28			1.3593	1.5529	34.638	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84859	1.0074	NaN	1	0	Median	0.84306	0.81817	NaN	1	0	Median	1.4747	1.609	NaN	1	0	Median	32077000	15902000	16174000	0	0	0	7808700	4703300	3105300	4927400	2574900	2352400	19341000	8624000	10717000	39553	5526	37214	242566;242567;242568;242569;242570	325474;325475;325476;325477;325478;325479;325480	325477	3471		7	
NQLTAMSSVLAK	1	Unmodified	1261.67	0.67002202	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.34	1	4	1				3	4	1	4	3	4	3	66.88	60.697	2	4.6531E-08	32708	160513_QHF_FH_JSI11Kac_5	112.13	57.066			1.0987	1.0994	20.41	13	2	Median	1.0987	0.94626	21.361	3	1	Plateau	1.0521	1.3009	28.943	3	1	Plateau	1.0931	1.0739	20.475	4	0	Median	0.9166	1.0132	14.013	3	0	Plateau	2132700000	1078600000	1054100000	404520000	162140000	242380000	373420000	197740000	175680000	778110000	421490000	356620000	576670000	297220000	279460000	39554	2502	37215	242571;242572;242573;242574;242575;242576;242577;242578;242579;242580;242581;242582;242583;242584	325481;325482;325483;325484;325485;325486;325487;325488;325489;325490;325491;325492;325493;325494;325495;325496;325497;325498;325499;325500;325501	325497			21	
NQLTAMSSVLAK	1	Oxidation (M)	1277.6649	0.66493664	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	1	0			By MS/MS		14.5	0.5							1	1				2		46.197	35.826	2	0.032671	20160	160513_QHF_FH_JSI11Kac_5	39.918	27.705			0.63827	0.62509	2.7163	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63827	0.62509	2.7163	2	0	Median	NaN	NaN	NaN	0	0	Median	11597000	7308400	4289100	0	0	0	0	0	0	11597000	7308400	4289100	0	0	0	39555	2502	37215	242585;242586	325502	325502			1	
NQLTSLPSAICK	1	Unmodified	1330.6915	0.69148574	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.008	54.345	2	0.0057168	49421	160511_QHF_FH_JSI12i_1	62.166	48.171			0.10273	0.10975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10273	0.10975	NaN	1	1	Median	259570000	247860000	11704000	0	0	0	0	0	0	0	0	0	259570000	247860000	11704000	39556	2344	37216	242587	325503	325503			1	
NQLTSNPENTVFDAK	1	Unmodified	1676.8006	0.8005785	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.56	10	5	4		2	3	2	2		7	8	7	6	53.985	49.843	2;3	1.0974E-97	45378	160511_QHF_FH_JSI12i_1	255.31	219.77			0.9957	1.0126	23.705	25	4	Median	1.0402	0.87284	43.961	6	3	Median	0.76701	0.89972	8.9224	7	0	Median	1.0773	1.0865	12.631	6	1	Median	1.0052	1.1042	16.212	6	0	Median	16371000000	8556000000	7815400000	3463300000	1545900000	1917400000	4541300000	2702000000	1839300000	4297900000	2100700000	2197200000	4068900000	2207300000	1861500000	39557	982	37217	242588;242589;242590;242591;242592;242593;242594;242595;242596;242597;242598;242599;242600;242601;242602;242603;242604;242605;242606;242607;242608;242609;242610;242611;242612;242613;242614;242615	325504;325505;325506;325507;325508;325509;325510;325511;325512;325513;325514;325515;325516;325517;325518;325519;325520;325521;325522;325523;325524;325525;325526;325527;325528;325529;325530;325531;325532;325533;325534;325535;325536;325537;325538;325539;325540;325541;325542;325543;325544;325545;325546;325547;325548;325549;325550;325551;325552;325553;325554;325555	325517			51	
NQLTSNPENTVFDAKR	1	Acetyl (K)	1874.9123	0.91225421	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.452						2	5				1	2	4	66.133	55.75	2;3	3.5646E-15	30063	160513_QHF_FH_JSI10Kac_4	138.42	125.22			0.49051	0.44833	73.369	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1308	1.3229	NaN	1	0	Median	0.49051	0.44833	NaN	1	0	Median	0.29645	0.32641	NaN	1	1	Median	16223000	12199000	4024000	0	0	0	5375800	2179800	3195900	2919000	2359500	559490	7928300	7659700	268580	39558	982	37218	242616;242617;242618;242619;242620;242621;242622	325556;325557;325558;325559;325560;325561;325562	325557	769		7	
NQLTSNPENTVFDAKR	1	Unmodified	1832.9017	0.90168952	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				42.985	41.935	3	0.023534	36723	160511_QHF_FH_JSI9i_2	32.341	13.745			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39559	982	37218	242623	325563	325563			1	
NQLYESYYLNFISAISR	0	Unmodified	2080.0266	0.026555687	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.853	90.132	2	1.6759E-31	52066	160513_QHF_FH_JSI10Kac_6	159.22	146.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39560	3785	37219	242624	325564	325564			1	
NQMAEPPPPEPPAGPSEVEQQLQAEAEHLRK	1	Unmodified	3403.6467	0.6466674	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		82.894	82.894	4	0.00076284	74005	160511_QHF_FH_JSI11i_3	32.075	26.588			0.80667	0.75794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80667	0.75794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45946000	18862000	27084000	0	0	0	0	0	0	45946000	18862000	27084000	0	0	0	39561	2270	37220	242625	325565	325565			1	
NQMGQVEIEDQVEGLQFVAEK	1	Unmodified	2390.1424	0.14239008	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	89.525	89.06	3	0.00018325	81100	160511_QHF_FH_JSI12i_1	52.03	43.843			0.82122	0.83153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82122	0.83153	NaN	1	1	Median	9395300	5664700	3730600	0	0	0	0	0	0	0	0	0	9395300	5664700	3730600	39562	3308	37221	242626	325566	325566			1	
NQMLIEEEVQK	1	Unmodified	1359.6704	0.67041595	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								2	3	3	3	48.122	47.362	2	5.8004E-06	43110	160511_QHF_FH_JSI12i_1	123.86	102.99			1.081	1.0431	227.24	8	8	Median	5.1873	4.3227	NaN	1	1	Median	0.64434	0.76647	322.53	2	2	Median	1.081	1.0431	191.41	2	2	Median	0.15607	0.16678	303.41	3	3	Median	834610000	491610000	343000000	144370000	76468000	67902000	199830000	125640000	74183000	207450000	99659000	107790000	282950000	189840000	93117000	39563	5663	37222	242627;242628;242629;242630;242631;242632;242633;242634;242635;242636;242637	325567;325568;325569;325570;325571;325572;325573;325574;325575;325576;325577	325571			11	
NQMVIAFFHPYCNAGGGGER	0	Unmodified	2223.9942	0.99422648	2799	Q2TAA5	ALG11	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		1	2		79.198	71.072	3	5.9103E-06	39507	160513_QHF_FH_JSI10Kac_6	135.04	125.48			1.3481	1.5907	17.05	3	3	Median	NaN	NaN	NaN	0	0	Median	1.3481	1.5907	NaN	1	1	Median	1.4127	1.3826	21.222	2	2	Median	NaN	NaN	NaN	0	0	Median	79463000	25962000	53501000	0	0	0	47239000	11995000	35243000	32224000	13967000	18258000	0	0	0	39564	2799	37223	242638;242639;242640	325578;325579;325580	325580			3	
NQNAPDSRPEENFFSR	0	Unmodified	1906.8558	0.85580196	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		39.287	38.281	3	0.0034762	33627	160511_QHF_FH_JSI10i_2	82.259	77.05			1.5295	1.593	3.205	2	0	Median	1.7521	1.5573	NaN	1	0	Median	1.3352	1.6296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94375000	43584000	50791000	36123000	17751000	18372000	58252000	25833000	32419000	0	0	0	0	0	0	39565	4829	37224	242641;242642;242643	325581;325582	325582			1	
NQNDPLPGR	0	Unmodified	1009.4941	0.49410656	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.492	15.034	2	0.00016885	12827	160511_QHF_FH_JSI12i_1	87.696	68.336			0.97943	1.0476	5.0166	4	0	Median	1.3414	1.0797	NaN	1	0	Median	0.8781	1.0622	NaN	1	0	Median	0.99429	0.96371	NaN	1	0	Median	0.96479	1.0332	NaN	1	0	Median	1085400000	523670000	561770000	260860000	111220000	149640000	271620000	137070000	134540000	285810000	137810000	148000000	267160000	137570000	129590000	39566	543	37225	242644;242645;242646;242647	325583;325584;325585;325586;325587	325585			5	
NQNIQKPEYSE	1	Unmodified	1348.6259	0.62590859	4364	Q9BQP7	MGME1	Mitochondrial genome maintenance exonuclease 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	20.286	19.794	2	0.011737	17253	160511_QHF_FH_JSI12i_1	61.56	45.97			0.47815	0.49256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47815	0.49256	NaN	1	0	Median	24078000	11268000	12810000	0	0	0	0	0	0	0	0	0	24078000	11268000	12810000	39567	4364	37226	242648	325588	325588			1	
NQNSWGTGEDVK	1	Unmodified	1333.5899	0.58985744	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.33	4.78	4	1					1			1	2	1	2	23.246	21.378	2	1.999E-07	18662	160511_QHF_FH_JSI10i_1	160.77	153.12			1.018	0.96588	31.787	5	1	Median	1.018	0.82578	NaN	1	0	Median	0.81195	0.96588	NaN	1	0	Median	1.0352	1.0048	NaN	1	0	Median	0.73426	0.77733	58.701	2	1	Median	1789900000	901930000	887960000	422410000	193000000	229410000	440220000	253160000	187070000	375080000	188940000	186150000	552160000	266830000	285340000	39568	1180	37227	242649;242650;242651;242652;242653;242654	325589;325590;325591;325592;325593;325594;325595;325596	325592			8	
NQPDYYEVVSQPIDLMK	1	Unmodified	2037.9717	0.97174292	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		91.363	91.004	2	2.202E-07	82891	160511_QHF_FH_JSI11i_1	97.551	86.646			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39569	3318	37228	242655	325597	325597			1	
NQPEVDMSDR	0	Unmodified	1189.5034	0.50335062	2668	Q15404	RSU1	Ras suppressor protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	19.944	19.236	2	0.0067533	16274	160511_QHF_FH_JSI9i_1	64.654	42.162			1.1823	1.1728	7.4022	2	2	Median	1.4936	1.2359	NaN	1	1	Median	0.93583	1.113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93543000	42289000	51254000	38303000	14366000	23937000	55240000	27923000	27317000	0	0	0	0	0	0	39570	2668	37229	242656;242657;242658	325598;325599;325600	325600			3	
NQPLVYLMLTTHPSLYR	0	Unmodified	2045.0768	0.076817118	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		87.236	79.898	2;3	5.3125E-06	45458	160513_QHF_FH_JSI10Kac_6	174.51	153.55			0.71558	0.84455	76.386	4	4	Median	1.4696	1.2761	NaN	1	1	Median	0.71558	0.84478	58.409	2	2	Median	0.27303	0.26037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1495000000	1156900000	338180000	37671000	11416000	26255000	741650000	502030000	239630000	715720000	643420000	72302000	0	0	0	39571	700	37230	242659;242660;242661;242662	325601;325602;325603;325604	325604			4	
NQPQFQQMR	0	Unmodified	1175.5506	0.55057558	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	23.18	22.331	2	2.5579E-05	18525	160511_QHF_FH_JSI12i_2	104.45	99.289			1.5021	1.4395	20.921	4	1	Median	1.747	1.4586	NaN	1	0	Median	1.1227	1.3487	NaN	1	1	Median	2.0797	2.1296	NaN	1	0	Median	1.2914	1.4207	NaN	1	0	Median	762470000	346040000	416430000	226770000	99214000	127550000	147770000	85030000	62739000	192860000	61070000	131790000	195070000	100730000	94341000	39572	1831	37231	242663;242664;242665;242666	325605;325606;325607	325605			3	
NQPTNVTLSSGFVADR	0	Unmodified	1704.8431	0.84311201	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		54.055	53.392	2	4.1763E-05	48087	160511_QHF_FH_JSI10i_1	96.745	54.396			0.54454	0.58659	22.784	3	1	Plateau	1.0312	0.84352	NaN	1	1	Median	0.56104	0.66469	NaN	1	0	Median	0.54454	0.53489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299510000	181650000	117860000	67678000	29146000	38532000	111320000	74739000	36579000	120510000	77765000	42745000	0	0	0	39573	4288	37232	242667;242668;242669	325608;325609;325610	325609			3	
NQQDNPEANWK	1	Unmodified	1342.5902	0.59019179	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.852	20.669	2	0.0023331	17541	160511_QHF_FH_JSI9i_1	61.65	32.177			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39574	486	37233	242670	325611	325611			1	
NQQEIPSYLNDEPPEGSMK	1	Unmodified	2174.979	0.97901315	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	13									5	3	1	4	59.192	58.451	2;3	1.8945E-15	51776	160511_QHF_FH_JSI9i_1	160.27	147.07			1.0932	1.0266	21.511	10	3	Median	1.1859	0.99951	28.447	4	1	Median	0.9331	1.1039	26.059	3	2	Median	1.0158	0.97592	NaN	1	0	Median	1.0299	1.0859	15.692	2	0	Median	519030000	253690000	265340000	235960000	113300000	122660000	124450000	61981000	62464000	47828000	24898000	22931000	110800000	53512000	57284000	39575	3763	37234	242671;242672;242673;242674;242675;242676;242677;242678;242679;242680;242681;242682;242683	325612;325613;325614;325615;325616;325617;325618;325619;325620;325621;325622;325623;325624;325625	325624			14	
NQQFHKER	1	Acetyl (K)	1127.5472	0.54720476	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		11.223	1.8913	3	0.018044	4098	160513_QHF_FH_JSI11Kac_6	39.622	22.951			0.35491	0.3474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35491	0.3474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41254000	30221000	11033000	0	0	0	0	0	0	41254000	30221000	11033000	0	0	0	39576	2644	37235	242684	325626	325626	2608		1	
NQQIFLR	0	Unmodified	917.5083	0.50830006	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	33.429	32.536	2	0.017776	27615	160511_QHF_FH_JSI12i_2	60.961	40.679			1.7597	2.0412	19.724	3	2	Median	NaN	NaN	NaN	0	0	Median	1.6306	2.0412	NaN	1	1	Median	1.7597	1.801	NaN	1	1	Median	2.3651	2.6509	NaN	1	0	Median	307660000	128510000	179150000	0	0	0	97666000	52169000	45497000	138210000	54219000	83990000	71782000	22119000	49663000	39577	2043	37236	242685;242686;242687	325627;325628;325629	325627			3	
NQQITHANNTVSNFK	1	Unmodified	1714.8387	0.83869534	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.28	0.448		13	5							2	3	5	8	24.237	23.617	2;3	4.3751E-09	19451	160511_QHF_FH_JSI12i_3	184.31	115.66			0.79869	0.67738	137.94	17	16	Median	1.2738	1.0817	66.188	2	2	Median	0.38615	0.48087	100.57	3	2	Median	1.6237	1.5466	152.75	5	5	Median	0.48747	0.49188	174.99	7	7	Median	2611000000	1457800000	1153300000	296130000	151080000	145050000	497760000	357790000	139970000	1001800000	525100000	476680000	815370000	423800000	391570000	39578	3852	37237	242688;242689;242690;242691;242692;242693;242694;242695;242696;242697;242698;242699;242700;242701;242702;242703;242704;242705	325630;325631;325632;325633;325634;325635;325636;325637;325638;325639;325640;325641;325642;325643;325644;325645;325646;325647;325648	325648			19	
NQQITHANNTVSNFKR	1	Acetyl (K)	1912.9504	0.95037105	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.121	31.549	3	0.034713	17340	160513_QHF_FH_JSI11Kac_6	36.593	28.812			0.1911	0.18471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1911	0.18471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9048800	8798800	249990	0	0	0	0	0	0	9048800	8798800	249990	0	0	0	39579	3852	37238	242706	325649	325649			1	
NQQPVLPAGLQVPK	1	Unmodified	1487.846	0.84601255	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	65.107	64.455	2;3	0.00036604	57128	160511_QHF_FH_JSI9i_1	77.533	54.214			0.97152	0.96515	5.2957	7	1	Median	1.2884	1.0447	2.7462	2	0	Median	0.83579	0.96515	NaN	1	0	Median	0.97489	0.93281	1.2911	2	0	Median	0.95412	0.98643	5.1423	2	1	Median	279380000	147480000	131900000	81656000	41385000	40271000	27188000	14818000	12370000	81270000	41499000	39772000	89266000	49777000	39489000	39580	2175	37239	242707;242708;242709;242710;242711;242712;242713	325650;325651;325652;325653;325654;325655;325656	325655			7	
NQQTIGAR	0	Unmodified	886.46208	0.46207815	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91	4	4				2	3			2	3	4	4	6.6491	3.3826	2	0.0007734	3924	160511_QHF_FH_JSI10i_1	98.418	49.657			0.82444	0.90039	12.396	13	0	Median	1.0702	0.90813	1.2102	2	0	Median	0.66596	0.78684	7.2877	3	0	Plateau	0.93188	0.90948	10.234	4	0	Median	0.80476	0.90087	14.843	4	0	Median	3933400000	1996400000	1936900000	812580000	366600000	445980000	1014000000	602910000	411080000	955600000	443200000	512390000	1151200000	583710000	567480000	39581	3218	37240	242714;242715;242716;242717;242718;242719;242720;242721;242722;242723;242724;242725;242726	325657;325658;325659;325660;325661;325662;325663;325664;325665;325666;325667;325668;325669;325670;325671;325672;325673	325664			17	
NQSFCPTVNLDK	1	Unmodified	1421.6609	0.66091389	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		48.516	48.097	2	0.00070146	43492	160511_QHF_FH_JSI11i_1	80.014	64.871			1.0946	1.1633	75.371	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7253	1.9822	NaN	1	1	Median	0.69446	0.68269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71174000	40535000	30639000	0	0	0	26785000	10344000	16441000	44389000	30191000	14198000	0	0	0	39582	1589	37241	242727;242728	325674;325675	325674			2	
NQSIIVSGESGAGK	1	Unmodified	1345.6838	0.68375782	4932;5631	Q9NQX4;Q9Y4I1	MYO5C;MYO5A	Unconventional myosin-Vc;Unconventional myosin-Va	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.67	26.097	2	3.4741E-06	23016	160511_QHF_FH_JSI10i_1	128.28	106.82			1.5117	1.5227	18.743	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3747	1.3336	NaN	1	1	Median	1.6623	1.7384	NaN	1	1	Median	69848000	12915000	56933000	11162000	0	11162000	12321000	0	12321000	15912000	4765900	11147000	30453000	8148800	22304000	39583	4932;5631	37242	242729;242730;242731;242732	325676;325677;325678;325679;325680	325678			5	
NQSPTEAEK	1	Unmodified	1002.4618	0.46180338	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	1	2	5.8839	-1.313	2	0.010444	1755	160513_QHF_FH_JSI10Kac_2	57.59	21.71			1.0874	1.2052	41.381	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0147	1.1566	NaN	1	0	Median	1.3774	1.3334	NaN	1	0	Median	0.77255	0.83062	58.469	2	0	Median	7304600	3668300	3636300	0	0	0	1490100	621170	868900	1866900	842660	1024300	3947600	2204500	1743200	39584	4284	37243	242733;242734;242735;242736	325681;325682;325683	325682			3	
NQSPVDQGATGASQGLLDRK	1	Unmodified	2041.0188	0.018844547	1146	P18827	SDC1	Syndecan-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	40.19	39.596	3	6.5829E-07	34761	160511_QHF_FH_JSI11i_3	93.684	78.291			0.9769	0.95531	5.7972	8	0	Median	1.0384	0.9077	NaN	1	0	Median	0.77027	0.92973	1.5445	2	0	Median	0.99889	0.95612	2.5493	3	0	Median	0.99279	1.0369	7.1617	2	0	Median	421100000	218110000	202990000	57564000	30293000	27271000	115880000	62243000	53633000	163040000	75196000	87847000	84617000	50376000	34241000	39585	1146	37244	242737;242738;242739;242740;242741;242742;242743;242744	325684;325685;325686;325687;325688;325689;325690;325691;325692;325693;325694;325695;325696;325697;325698;325699	325684			16	
NQSPVLEPVGR	0	Unmodified	1194.6357	0.63568542	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	32.52	32.064	2	0.0015512	28975	160511_QHF_FH_JSI12i_1	62.78	43.509			1.7628	1.9926	5.7825	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7362	2.0758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7898	1.9128	NaN	1	0	Median	484990000	158960000	326030000	0	0	0	224570000	79136000	145430000	0	0	0	260420000	79821000	180600000	39586	1755	37245	242745;242746	325700;325701;325702;325703	325701			4	
NQSQGYNQWQQGQFWGQK	1	Unmodified	2210.9882	0.98821312	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.74	4.51	3	21	6						4	4	6	14	10	62.129	60.315	2;3	1.9739E-98	52468	160511_QHF_FH_JSI11i_2	332.56	320			0.95711	1.0147	21.671	30	7	Median	0.99353	0.85402	22.826	4	1	Median	0.87474	1.071	21.671	6	1	Median	1.0395	0.98645	27.394	11	3	Median	0.95573	1.0327	13.29	9	2	Median	3592600000	1778800000	1813800000	561880000	263610000	298270000	882160000	445440000	436710000	1111700000	538610000	573070000	1036900000	531110000	505750000	39587	2161	37246	242747;242748;242749;242750;242751;242752;242753;242754;242755;242756;242757;242758;242759;242760;242761;242762;242763;242764;242765;242766;242767;242768;242769;242770;242771;242772;242773;242774;242775;242776;242777;242778;242779;242780	325704;325705;325706;325707;325708;325709;325710;325711;325712;325713;325714;325715;325716;325717;325718;325719;325720;325721;325722;325723;325724;325725;325726;325727;325728;325729;325730;325731;325732;325733;325734;325735;325736;325737;325738;325739;325740;325741;325742;325743;325744;325745;325746;325747;325748;325749;325750;325751;325752;325753;325754;325755;325756;325757;325758;325759;325760	325736			54	
NQSQGYNQWQQGQFWGQKPWSQHYHQGYY	1	Acetyl (K)	3699.6093	0.60931111	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		81.171	73.693	3;4	1.6628E-99	40797	160513_QHF_FH_JSI10Kac_6	218.4	216.58			1.1465	1.2158	12.857	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94525	1.1101	NaN	1	0	Median	1.3905	1.3315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1139600000	528280000	611360000	0	0	0	1067200000	509080000	558100000	72457000	19200000	53258000	0	0	0	39588	2161	37247	242781;242782	325761;325762;325763	325763	2277		3	
NQTAEKEEFEHQQK	2	Acetyl (K)	1786.8122	0.81220581	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	32.068	22.833	3	0.010099	14106	160513_QHF_FH_JSI12Kac_4	40.941	37.861			0.47095	0.506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47095	0.506	NaN	1	0	Median	16540000	11151000	5389100	0	0	0	0	0	0	0	0	0	16540000	11151000	5389100	39589	985	37248	242783	325764	325764	775;782		1	
NQTAEKEEFEHQQK	2	Unmodified	1744.8016	0.80164113	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.2627	9.3603	3	0.0087784	6740	160511_QHF_FH_JSI12i_3	48.823	28.984			1.395	1.3761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.395	1.3761	NaN	1	1	Median	27676000	11159000	16516000	0	0	0	0	0	0	0	0	0	27676000	11159000	16516000	39590	985	37248	242784	325765	325765			1	
NQTPAPSAAQTSAPSKYHR	1	Acetyl (K)	2052.9977	0.99771517	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	1	2	34.302	25.031	3	0.00071738	15675	160513_QHF_FH_JSI11Kac_4	61.102	56.485			0.63366	0.68867	54.746	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2388	1.4435	NaN	1	0	Median	0.50379	0.4957	NaN	1	0	Median	0.63366	0.68867	NaN	1	0	Median	15198000	9263600	5934200	0	0	0	3375800	1392600	1983100	6914900	4395100	2519800	4907100	3475800	1431200	39591	5202	37249	242785;242786;242787;242788	325766;325767;325768	325767	3332		3	
NQTQLNTTWLR	0	Unmodified	1373.7052	0.70516197	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	53.1	52.146	2	0.001036	44617	160511_QHF_FH_JSI12i_2	66.595	55.444			0.81565	0.84862	34.029	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.0795	NaN	1	1	Median	0.61318	0.66714	NaN	1	0	Median	67961000	33259000	34702000	0	0	0	0	0	0	30337000	11719000	18618000	37624000	21540000	16084000	39592	4202	37250	242789;242790	325769;325770	325769			2	
NQTQVLR	0	Unmodified	857.47191	0.47191456	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.203	9.5494	2	0.040857	7147	160511_QHF_FH_JSI12i_2	49.358	14.253			0.38467	0.42726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38467	0.42726	NaN	1	1	Median	216260000	178920000	37350000	0	0	0	0	0	0	0	0	0	216260000	178920000	37350000	39593	4013	37251	242791	325771	325771			1	
NQTTSVAK	1	Unmodified	847.43995	0.43994572	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.1338	4.8183	2	0.013012	2759	160511_QHF_FH_JSI12i_1	52.716	31.416			0.86854	0.94991	8.371	4	0	Median	1.2133	1.0094	NaN	1	0	Median	0.81151	0.95131	NaN	1	0	Median	0.84393	0.82824	NaN	1	0	Median	0.89386	0.9485	NaN	1	0	Median	738430000	360080000	378350000	163310000	65933000	97375000	194690000	105430000	89256000	173680000	84966000	88709000	206750000	103740000	103010000	39594	3258	37252	242792;242793;242794;242795	325772;325773;325774;325775;325776;325777	325774			6	
NQVALNPQNTVFDAK	1	Unmodified	1657.8424	0.84238373	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	5.98	10	4	3		1	6	4	2		6	8	8	8	59.933	54.995	2;3	1.3552E-65	51626	160511_QHF_FH_JSI11i_1	234.17	206.16			1.0674	0.99222	35.832	25	7	Median	1.1111	0.94622	12.198	6	0	Median	0.79417	0.9938	43.591	7	2	Plateau	1.0127	0.99388	22.88	7	4	Median	0.99917	1.0413	48.981	5	1	Median	25893000000	12447000000	13445000000	7114900000	3156600000	3958300000	6653000000	3616400000	3036600000	6309900000	2866000000	3443900000	5814900000	2808400000	3006500000	39595	954	37253	242796;242797;242798;242799;242800;242801;242802;242803;242804;242805;242806;242807;242808;242809;242810;242811;242812;242813;242814;242815;242816;242817;242818;242819;242820;242821;242822;242823;242824;242825	325778;325779;325780;325781;325782;325783;325784;325785;325786;325787;325788;325789;325790;325791;325792;325793;325794;325795;325796;325797;325798;325799;325800;325801;325802;325803;325804;325805;325806;325807;325808;325809;325810;325811;325812;325813;325814;325815;325816;325817;325818;325819;325820;325821;325822;325823;325824;325825;325826;325827;325828;325829;325830;325831;325832;325833;325834;325835;325836;325837;325838;325839;325840;325841;325842	325780			64	
NQVALNPQNTVFDAKR	1	Acetyl (K)	1855.9541	0.95405945	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.629						3	5	1			3	4	2	72.368	62.314	2;3	0.000133	32967	160513_QHF_FH_JSI10Kac_4	103.88	89.975			0.6413	0.71908	71.349	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0416	1.2413	13.315	3	0	Plateau	0.35164	0.3486	2.355	2	0	Median	0.41905	0.43913	NaN	1	1	Median	94761000	63830000	30931000	0	0	0	34656000	17530000	17126000	59099000	45424000	13675000	1006700	875690	131010	39596	954	37254	242826;242827;242828;242829;242830;242831;242832;242833;242834	325843;325844;325845;325846;325847;325848;325849;325850;325851;325852;325853;325854;325855	325846	721		13	
NQVAMNPTNTIFDAK	1	Unmodified	1662.8036	0.80355538	1827	P54652	HSPA2	Heat shock-related 70 kDa protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		62.558	61.805	2	1.0372E-06	54903	160511_QHF_FH_JSI9i_1	142.91	125.1			0.91924	0.8244	26.571	2	2	Median	1.2023	0.9948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70285	0.68319	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131670000	64285000	67386000	56773000	25914000	30859000	0	0	0	74898000	38371000	36527000	0	0	0	39597	1827	37255	242835;242836	325856;325857;325858;325859	325857			4	
NQVAMNPTNTVFDAK	1	Unmodified	1648.7879	0.78790532	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.69	10	4	4			3	3	2		6	6	8	6	58.1	54.244	2;3	8.716E-52	48156	160511_QHF_FH_JSI9i_1	216.84	187.88			0.96222	0.99679	30.81	25	6	Median	1.0388	0.8895	20.917	6	2	Median	0.81981	0.99986	8.8504	6	0	Median	1.0106	0.99679	43.384	7	3	Median	0.97838	1.0569	33.883	6	1	Median	29094000000	12488000000	16607000000	7921400000	2900600000	5020800000	6956600000	3606900000	3349800000	7728700000	3271100000	4457600000	6487700000	2709100000	3778500000	39598	985	37256	242837;242838;242839;242840;242841;242842;242843;242844;242845;242846;242847;242848;242849;242850;242851;242852;242853;242854;242855;242856;242857;242858;242859;242860;242861;242862	325860;325861;325862;325863;325864;325865;325866;325867;325868;325869;325870;325871;325872;325873;325874;325875;325876;325877;325878;325879;325880;325881;325882;325883;325884;325885;325886;325887;325888;325889;325890;325891;325892;325893;325894;325895;325896;325897;325898;325899;325900;325901;325902;325903;325904;325905;325906;325907;325908;325909;325910;325911;325912;325913;325914;325915;325916;325917;325918;325919;325920;325921	325897			62	
NQVAMNPTNTVFDAK	1	Oxidation (M)	1664.7828	0.78281994	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.63	5.71	5	2	2		3	4	3			3	6	4	6	48.425	42.591	2;3	1.3916E-39	38221	160511_QHF_FH_JSI11i_1	199.12	187.91			0.99614	1.0058	17.979	18	2	Median	0.86406	0.7191	24.849	2	1	Median	0.79092	0.93826	16.639	6	0	Median	1.0418	1.0161	7.5478	4	0	Median	1.0235	1.0897	11.899	6	1	Median	2737800000	1402800000	1335000000	512810000	207570000	305240000	634860000	379620000	255230000	639550000	277670000	361880000	950600000	537940000	412650000	39599	985	37256	242863;242864;242865;242866;242867;242868;242869;242870;242871;242872;242873;242874;242875;242876;242877;242878;242879;242880;242881	325922;325923;325924;325925;325926;325927;325928;325929;325930;325931;325932;325933;325934;325935;325936;325937;325938;325939;325940;325941;325942;325943;325944;325945;325946;325947;325948;325949;325950;325951;325952;325953;325954;325955	325924		565	34	
NQVAMNPTNTVFDAKR	1	Acetyl (K);Oxidation (M)	1862.8945	0.89449566	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.498						5	6				4	4	3	59.335	49.155	2;3	0.0001922	27680	160513_QHF_FH_JSI11Kac_4	91.657	83.681			0.64962	0.7006	125.58	8	1	Median	NaN	NaN	NaN	0	0	Median	1.1294	1.3153	8.8206	4	0	Median	0.34189	0.33535	110	4	1	Median	NaN	NaN	NaN	0	0	Median	95577000	68004000	27573000	0	0	0	28909000	12914000	15995000	58261000	46683000	11578000	8406800	8406800	0	39600	985	37257	242882;242883;242884;242885;242886;242887;242888;242889;242890;242891;242892	325956;325957;325958;325959;325960;325961;325962;325963;325964;325965;325966;325967;325968;325969	325962	783	565	14	
NQVAMNPTNTVFDAKR	1	Acetyl (K)	1846.8996	0.89958103	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.9	0.35						1	6				2	2	3	70.093	59.559	2;3	0.00032217	31892	160513_QHF_FH_JSI10Kac_4	97.836	93.665			0.74761	0.80216	68.567	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2403	1.4642	11.158	2	0	Median	0.37599	0.37417	3.7812	2	0	Median	0.74761	0.80216	NaN	1	1	Median	67197000	46602000	20595000	0	0	0	19324000	8825600	10498000	42273000	32594000	9678700	5599500	5181800	417700	39601	985	37257	242893;242894;242895;242896;242897;242898;242899	325970;325971;325972;325973;325974;325975;325976	325971	783		7	
NQVAMNPTNTVFDAKR	1	Unmodified	1804.889	0.88901635	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				47.232	46.176	3	0.00015821	40385	160511_QHF_FH_JSI9i_2	76.158	67.981			0.54168	0.4695	NaN	1	1	Median	0.54168	0.4695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42700000	26843000	15858000	42700000	26843000	15858000	0	0	0	0	0	0	0	0	0	39602	985	37257	242900	325977	325977			1	
NQVEDLLATLEK	1	Unmodified	1371.7246	0.72456001	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	96.332	96.117	2	0.00010052	87428	160511_QHF_FH_JSI11i_1	89.731	73.85			0.86012	0.89052	23.509	8	2	Median	1.1199	0.9979	NaN	1	0	Median	0.59904	0.69984	38.995	3	2	Plateau	0.86358	0.8448	22.555	2	0	Median	0.86012	0.89052	8.8615	2	0	Median	277490000	147780000	129710000	46469000	22495000	23974000	104090000	56737000	47349000	66851000	37738000	29112000	60084000	30812000	29272000	39603	3840	37258	242901;242902;242903;242904;242905;242906;242907;242908	325978;325979;325980;325981;325982;325983;325984;325985;325986;325987;325988	325978			10	
NQVGDENWR	0	Unmodified	1116.4948	0.49483484	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			2	2	2	3	20.412	18.786	2	0.00039031	15946	160511_QHF_FH_JSI9i_2	85.666	75.755			0.96026	1.0636	37.3	7	3	Median	1.5987	1.3651	NaN	1	1	Median	0.93887	1.1314	NaN	1	0	Median	0.92714	0.91955	6.1868	2	0	Median	1.0052	1.0636	59.108	3	2	Median	381930000	205580000	176350000	41148000	17260000	23888000	53317000	28292000	25024000	153790000	74215000	79578000	133670000	85816000	47857000	39604	3914	37259	242909;242910;242911;242912;242913;242914;242915;242916;242917	325989;325990;325991;325992;325993;325994;325995;325996;325997;325998;325999	325994			11	
NQVLPLSDVDTTSATDIQR	0	Unmodified	2072.0386	0.038576936	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	68.373	67.798	2	7.6028E-18	61446	160511_QHF_FH_JSI10i_1	158.81	143.43			1.1214	1.0892	21.743	5	2	Median	1.8451	1.5619	NaN	1	0	Median	1.1214	1.319	NaN	1	0	Median	1.1363	1.0892	NaN	1	0	Median	0.93986	0.97274	13.478	2	2	Median	160730000	70358000	90372000	31000000	10104000	20896000	36207000	14727000	21481000	37214000	15624000	21589000	56309000	29903000	26406000	39605	5138	37260	242918;242919;242920;242921;242922	326000;326001;326002;326003;326004;326005;326006;326007;326008	326006			9	
NQVLTLEEWQDK	1	Unmodified	1501.7413	0.7412727	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	64.923	63.94	2	2.3433E-05	55036	160511_QHF_FH_JSI12i_2	115.57	78.018			0.88715	0.94206	36.077	5	4	Median	0.88715	0.73387	NaN	1	1	Median	0.75935	0.94206	NaN	1	0	Median	1.1536	1.1372	NaN	1	1	Median	0.99524	1.135	61.055	2	2	Median	175780000	85200000	90577000	25641000	12556000	13085000	23993000	12944000	11049000	54818000	24205000	30613000	71326000	35495000	35831000	39606	1742	37261	242923;242924;242925;242926;242927	326009;326010;326011;326012;326013;326014	326010			6	
NQVLVFVHSR	0	Unmodified	1197.6618	0.66184059	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.62		7	6					1	8	8	5	5	4	46.592	41.834	2;3	1.0729E-06	23031	160513_QHF_FH_JSI10Kac_6	128.27	92.914			1.0862	1.138	35.029	20	5	Median	1.3506	1.1306	44.856	7	3	Median	0.81521	0.97684	12.211	5	0	Median	1.4506	1.3677	46.015	5	1	Median	1.1811	1.2549	12.903	3	1	Median	3170200000	1574500000	1595700000	982310000	475460000	506850000	1357900000	710630000	647280000	540040000	238040000	302000000	289900000	150340000	139560000	39607	552	37262	242928;242929;242930;242931;242932;242933;242934;242935;242936;242937;242938;242939;242940;242941;242942;242943;242944;242945;242946;242947;242948;242949	326015;326016;326017;326018;326019;326020;326021;326022;326023;326024;326025;326026;326027;326028;326029;326030;326031;326032;326033;326034;326035;326036;326037;326038;326039;326040;326041;326042;326043;326044;326045;326046;326047	326045			33	
NQVTATK	1	Unmodified	760.40792	0.40791731	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.63	4	2			2	3				2	4	3	2	4.8603	1.3714	2	0.012815	2364	160511_QHF_FH_JSI11i_1	68.787	33.586			1.0415	1.0778	14.481	11	0	Median	1.2077	1.0238	15.131	2	0	Median	0.87849	1.0354	14.854	4	0	Median	1.0415	1.0148	18.845	3	0	Median	1.0835	1.1739	3.6078	2	0	Median	4644200000	2426500000	2217600000	521250000	230750000	290510000	1336900000	713050000	623860000	1299600000	638300000	661260000	1486500000	844440000	642020000	39608	935	37263	242950;242951;242952;242953;242954;242955;242956;242957;242958;242959;242960	326048;326049;326050;326051;326052;326053;326054;326055;326056	326048			9	
NQVTQLK	1	Unmodified	829.46577	0.46576654	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	11.455	11.053	2	0.01116	8773	160511_QHF_FH_JSI9i_2	71.715	40.412			1.0604	1.1409	19.66	9	0	Median	1.4216	1.2116	20.569	2	0	Median	1.0129	1.2358	4.4321	2	0	Median	0.97084	0.95648	24.93	2	0	Median	0.97242	1.0301	23.698	3	0	Median	3211400000	1690700000	1520700000	616890000	285770000	331120000	798300000	431970000	366330000	731150000	394630000	336520000	1065000000	578290000	486730000	39609	1004	37264	242961;242962;242963;242964;242965;242966;242967;242968;242969	326057;326058;326059;326060;326061;326062;326063;326064;326065;326066	326064			10	
NQVVHVPLEAYDSSLPLIK	1	Unmodified	2121.147	0.14700517	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.133	87.511	3	3.1386E-06	77084	160511_QHF_FH_JSI11i_2	93.381	84.097			1.0466	1.0328	28.558	4	1	Median	0.94183	0.81596	NaN	1	0	Median	1.2333	1.5041	NaN	1	0	Median	1.163	1.2148	NaN	1	1	Median	0.78844	0.87799	NaN	1	0	Median	127050000	68260000	58786000	23882000	13249000	10634000	37917000	19074000	18843000	37341000	19354000	17987000	27907000	16584000	11323000	39610	5677	37265	242970;242971;242972;242973	326067;326068;326069;326070	326069			3	
NQVVYSTMLVFFK	1	Unmodified	1574.8167	0.81668625	5046	Q9NVR2	INTS10	Integrator complex subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			2	1	93.754	84.351	2	5.3773E-06	47567	160513_QHF_FH_JSI11Kac_6	111.86	95.966			1.5198	1.4334	67.686	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5198	1.4334	67.686	2	2	Median	NaN	NaN	NaN	0	0	Median	154550000	57196000	97358000	0	0	0	0	0	0	126760000	57196000	69559000	27799000	0	27799000	39611	5046	37266	242974;242975;242976	326071;326072;326073	326071			3	
NQWIDNVEK	1	Unmodified	1144.5513	0.55128709	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.42		5					2			1	3	1	2	44.45	40.33	2	3.2359E-06	34641	160511_QHF_FH_JSI11i_2	135.79	114.89			0.86054	0.90166	16.186	6	2	Median	0.86836	0.75328	NaN	1	0	Median	0.87034	1.0432	23.247	2	2	Median	0.90241	0.91856	NaN	1	0	Median	0.82659	0.91098	7.3028	2	0	Median	1344100000	792500000	551640000	283160000	169920000	113230000	254340000	139580000	114760000	459140000	261450000	197700000	347500000	221560000	125950000	39612	1139	37267	242977;242978;242979;242980;242981;242982;242983	326074;326075;326076;326077;326078;326079;326080;326081	326078			8	
NQWQLSADDLKK	2	Unmodified	1444.731	0.73104237	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	48.861	47.878	3	2.512E-05	41115	160511_QHF_FH_JSI11i_2	72.705	62.516			0.88813	0.89652	11.859	4	0	Linear	1.4112	1.2068	NaN	1	0	Median	0.79332	0.98262	NaN	1	0	Median	0.92418	0.93319	NaN	1	0	Median	0.85348	0.95171	NaN	1	0	Median	350930000	169890000	181040000	59796000	19098000	40698000	78653000	43693000	34960000	113780000	48489000	65294000	98696000	58609000	40087000	39613	933	37268	242984;242985;242986;242987	326082;326083;326084;326085	326083			4	
NQWVNLNEPEEEK	1	Unmodified	1627.7478	0.74781464	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	49.605	49.138	2	3.4983E-05	44412	160511_QHF_FH_JSI11i_1	135.99	118.18			1.3565	1.2929	26.267	5	4	Median	NaN	NaN	NaN	0	0	Median	1.3764	1.5997	45.053	2	2	Median	1.4593	1.4083	12.097	2	2	Median	1.1171	1.1931	NaN	1	0	Median	232010000	101810000	130200000	0	0	0	78132000	37202000	40930000	93460000	34450000	59010000	60415000	30157000	30258000	39614	235	37269	242988;242989;242990;242991;242992	326086;326087;326088;326089;326090	326087			4	
NQYDNDVTVWSPQGR	0	Unmodified	1777.802	0.80197548	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								2	5	2	1	52.168	51.463	2;3	2.3341E-52	46634	160511_QHF_FH_JSI12i_1	223.22	200.5			0.95651	1.0477	18.123	8	1	Median	1.3128	1.087	10.579	2	1	Median	0.85673	1.045	8.7814	3	0	Median	0.8631	0.84297	36.078	2	0	Median	1.0125	1.0505	NaN	1	0	Median	1993400000	988520000	1004800000	309810000	128880000	180930000	676680000	372880000	303800000	517670000	260250000	257420000	489210000	226510000	262700000	39615	1264	37270	242993;242994;242995;242996;242997;242998;242999;243000;243001;243002	326091;326092;326093;326094;326095;326096;326097;326098;326099;326100;326101;326102;326103;326104	326096			13	
NQYEKHK	2	Acetyl (K)	987.47739	0.47739386	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		6.3335	-3.1901	2	0.047757	2165	160513_QHF_FH_JSI11Kac_5	60.972	39.672			0.37976	0.37692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37976	0.37692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8991700	6182900	2808800	0	0	0	0	0	0	8991700	6182900	2808800	0	0	0	39616	454	37271	243003	326105	326105			1	
NQYVPYPHAPGSQR	0	Unmodified	1612.7746	0.77463852	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	33.522	32.829	2;3	0.00019655	28701	160511_QHF_FH_JSI10i_2	72.652	55.627			0.91376	0.9168	27.727	8	0	Median	0.94695	0.82177	NaN	1	0	Median	0.75136	0.92025	NaN	1	0	Median	0.8931	0.90745	10.457	3	0	Plateau	1.3915	1.5287	28.115	3	0	Median	799250000	361770000	437480000	77907000	30605000	47301000	129710000	73215000	56497000	245350000	142240000	103120000	346280000	115710000	230570000	39617	2332	37272	243004;243005;243006;243007;243008;243009;243010;243011;243012;243013	326106;326107;326108;326109;326110;326111;326112;326113;326114;326115;326116;326117;326118;326119;326120	326118			15	
NQYVTLHDMILK	1	Unmodified	1473.765	0.76498503	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	6.73		7							4	3	1	3	4	65.296	62.541	2;3	1.5206E-07	54329	160511_QHF_FH_JSI11i_2	134.84	121.49			1.1346	1.0803	17.03	9	4	Median	1.4693	1.2656	35.587	2	1	Median	0.82152	1.0095	NaN	1	0	Median	1.1387	1.1175	7.4624	3	1	Median	0.9606	1.0803	16.458	3	2	Median	2649900000	1244000000	1405900000	301220000	115970000	185260000	502530000	253520000	249010000	975650000	424070000	551580000	870460000	450400000	420060000	39618	1950	37273	243014;243015;243016;243017;243018;243019;243020;243021;243022;243023;243024	326121;326122;326123;326124;326125;326126;326127;326128;326129;326130;326131;326132;326133;326134;326135;326136	326130			16	
NQYVTLHDMILKNIEK	2	Acetyl (K)	2000.0401	0.040097261	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.973	73.657	3	0.00012719	40663	160513_QHF_FH_JSI11Kac_6	78.441	65.551			0.22106	0.20769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22106	0.20769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	206800000	171580000	35221000	0	0	0	0	0	0	206800000	171580000	35221000	0	0	0	39619	1950	37274	243025	326137	326137	1964		1	
NRAEASLER	0	Unmodified	1044.5312	0.53122035	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			7.7959	7.3243	2	0.0013424	5326	160511_QHF_FH_JSI10i_2	85.29	58.16			0.92446	1.0672	17.607	3	0	Median	1.2655	1.1065	NaN	1	0	Median	0.78248	0.92537	20.171	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	399110000	178580000	220530000	125180000	53011000	72166000	273930000	125570000	148360000	0	0	0	0	0	0	39620	5233	37275	243026;243027;243028	326138;326139	326139			2	
NRAEQWNVNYVETSAK	1	Unmodified	1907.9126	0.91258856	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.67	0.471		1	2							1	1	1		43.672	42.806	3	2.8573E-06	36010	160511_QHF_FH_JSI10i_3	123.36	115.65			0.9254	1.0782	17.325	3	1	Median	1.2684	1.103	NaN	1	1	Median	0.9254	1.0782	NaN	1	0	Median	0.87877	0.80833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98487000	49789000	48698000	31973000	13690000	18282000	38016000	20786000	17231000	28498000	15313000	13185000	0	0	0	39621	993	37276	243029;243030;243031	326140;326141	326140			2	
NRAEVSQPR	0	Unmodified	1055.5472	0.54720476	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	4	5	1	1	5.7943	2.7572	2;3	8.6354E-07	3218	160511_QHF_FH_JSI10i_3	114.4	80.015			1.0263	1.1936	20.6	11	1	Median	1.5896	1.3288	22.359	4	1	Median	0.85395	0.9617	18.959	5	0	Median	1.2046	1.1936	NaN	1	0	Median	0.90605	0.9892	NaN	1	0	Median	4015600000	2185100000	1830400000	1522900000	646830000	876080000	2483100000	1533800000	949250000	4047400	1793100	2254300	5565200	2696100	2869100	39622	1208	37277	243032;243033;243034;243035;243036;243037;243038;243039;243040;243041;243042	326142;326143;326144;326145;326146;326147;326148;326149;326150;326151;326152;326153;326154;326155	326145			14	
NRDEAIK	1	Unmodified	844.44028	0.44028008	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	1	3	3	4.5949	3.2377	3	0.0070469	2339	160511_QHF_FH_JSI10i_2	58.917	31.955			0.89686	0.98813	105.75	8	3	Median	1.1507	0.98944	NaN	1	0	Median	0.89006	1.067	NaN	1	0	Median	1.1836	1.1965	106.47	3	2	Median	0.86369	0.9534	129.72	3	1	Median	6574800000	3502200000	3072600000	852870000	423050000	429820000	1601100000	960060000	641010000	2866500000	1392500000	1474000000	1254300000	726560000	527740000	39623	1436	37278	243043;243044;243045;243046;243047;243048;243049;243050	326156;326157;326158;326159;326160;326161;326162;326163;326164;326165;326166;326167	326165			12	
NRDVEMGNSVIEENEMK	1	Unmodified	1992.8881	0.88808965	1551	P43003	SLC1A3	Excitatory amino acid transporter 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			43.152	42.144	3	0.0016948	37109	160511_QHF_FH_JSI10i_2	58.712	48.924			0.38427	0.39969	10.005	2	2	Median	0.43101	0.37239	NaN	1	1	Median	0.3426	0.42899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83612000	52057000	31555000	43045000	25135000	17910000	40567000	26922000	13646000	0	0	0	0	0	0	39624	1551	37279	243051;243052	326168;326169	326169			2	
NRDYPLASK	1	Unmodified	1062.5458	0.54580778	1015;1182	P20839;P12268	IMPDH1;IMPDH2	Inosine-5'-monophosphate dehydrogenase 1;Inosine-5'-monophosphate dehydrogenase 2	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	3	1	12.926	12.679	2;3	0.00064645	10044	160511_QHF_FH_JSI11i_3	70.942	50.735			1.0372	1.1091	46.677	6	1	Median	NaN	NaN	NaN	0	0	Median	1.1223	1.3448	15.765	2	0	Median	1.0621	1.0637	10.643	3	0	Median	0.38472	0.39428	NaN	1	1	Median	544020000	272400000	271610000	0	0	0	140410000	69020000	71390000	353150000	171030000	182120000	50452000	32354000	18098000	39625	1182;1015	37280	243053;243054;243055;243056;243057;243058	326170;326171;326172;326173;326174	326171			5	
NREELDK	1	Unmodified	902.44576	0.44575938	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	5.437	5.0662	3	0.0042826	2898	160511_QHF_FH_JSI12i_3	61.962	18.716			0.29126	0.32039	177.95	7	7	Median	1.6401	1.4022	275.72	2	2	Median	1.0834	1.3104	234.77	2	2	Median	0.88928	0.8993	204.84	2	2	Median	0.29126	0.32039	NaN	1	1	Median	8895100000	4834100000	4061000000	1789500000	789840000	999670000	2440100000	1294600000	1145400000	3556700000	2055700000	1501000000	1108800000	693980000	414870000	39626	842	37281	243059;243060;243061;243062;243063;243064;243065;243066	326175;326176;326177;326178;326179;326180;326181;326182	326182			8	
NREELGFRPEYSASQLK	1	Unmodified	2023.0123	0.012302606	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.5	0.5		4	4							6	2			47.403	46.088	3;4	1.5794E-06	40434	160511_QHF_FH_JSI9i_2	103.5	93.578			1.1838	1.0034	15.192	8	5	Median	1.2875	1.06	11.68	6	4	Median	0.72113	0.84869	18.872	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	762140000	374510000	387630000	555920000	247990000	307930000	206220000	126520000	79695000	0	0	0	0	0	0	39627	939	37282	243067;243068;243069;243070;243071;243072;243073;243074	326183;326184;326185;326186;326187;326188;326189;326190;326191;326192	326187			10	
NREILDESLR	0	Unmodified	1243.6521	0.65206377	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		34.123	33.443	3	0.0013528	28465	160511_QHF_FH_JSI11i_2	57.164	46.976			0.49075	0.5469	24.632	2	2	Median	NaN	NaN	NaN	0	0	Median	0.52449	0.65095	NaN	1	1	Median	0.45918	0.45948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	113320000	78333000	34984000	0	0	0	60027000	43654000	16373000	53289000	34678000	18611000	0	0	0	39628	3766	37283	243075;243076	326193;326194	326193			2	
NRELAILLGMLDPAEK	1	Unmodified	1781.971	0.97095506	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	2	3	99.422	96.697	3	1.2856E-05	88491	160511_QHF_FH_JSI12i_3	99.891	78.798			1.3043	1.3451	78.886	9	3	Median	2.64	2.2371	120.45	2	1	Median	2.3446	2.8095	142.48	2	1	Median	1.591	1.5403	57.327	2	0	Median	1.3043	1.3451	49.189	3	1	Median	997320000	392090000	605240000	99447000	31898000	67548000	183020000	54788000	128230000	267260000	120220000	147040000	447590000	185180000	262410000	39629	1333	37284	243077;243078;243079;243080;243081;243082;243083;243084;243085	326195;326196;326197;326198;326199;326200;326201;326202;326203;326204;326205	326203			11	
NRELAILLGMLDPAEK	1	Oxidation (M)	1797.9659	0.96586969	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		96.08	96.08	3	0.0022408	85624	160511_QHF_FH_JSI11i_3	53.565	35.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39630	1333	37284	243086	326206	326206		976	1	
NREPLMPSPQFIK	1	Unmodified	1555.8181	0.81808324	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	1	2		57.668	56.881	3	0.0018217	50002	160511_QHF_FH_JSI9i_2	54.898	42.131			1.0698	1.185	23.151	5	1	Median	1.4805	1.2222	4.3682	2	0	Median	1.0698	1.3173	NaN	1	0	Median	0.83935	0.82725	4.2467	2	1	Median	NaN	NaN	NaN	0	0	Median	538580000	261400000	277180000	238200000	98099000	140100000	133350000	66002000	67348000	167030000	97297000	69733000	0	0	0	39631	611	37285	243087;243088;243089;243090;243091	326207;326208;326209;326210	326209			4	
NREPVQLETLSIR	0	Unmodified	1553.8526	0.85255449	2001	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.3		5	2						3	2	4	2	2	55.549	52.53	2;3	1.2338E-06	46294	160511_QHF_FH_JSI10i_2	138.89	105.15			1.0403	1.1228	12.227	9	1	Median	1.2094	1.0357	1.2062	2	0	Median	0.96423	1.1378	6.8292	4	0	Median	1.3278	1.294	20.063	2	0	Median	0.93384	1.0112	NaN	1	1	Median	2945500000	1477400000	1468100000	721020000	311070000	409950000	1846600000	984420000	862230000	372730000	179390000	193340000	5122700	2552200	2570500	39632	2001	37286	243092;243093;243094;243095;243096;243097;243098;243099;243100;243101	326211;326212;326213;326214;326215;326216;326217;326218;326219;326220;326221;326222;326223;326224;326225;326226;326227	326222			17	
NRESYEVSLTQK	1	Unmodified	1452.7209	0.72087161	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		2	5						1	2	1	3	2	27.393	26.027	2;3	4.1773E-05	21527	160511_QHF_FH_JSI12i_3	74.987	67.622			0.57527	0.61857	64.54	8	6	Median	1.0115	0.87581	153.58	2	2	Median	0.56426	0.67889	NaN	1	1	Median	0.75375	0.72663	34.995	3	2	Median	0.50447	0.51815	11.892	2	1	Median	962480000	624580000	337900000	242660000	196140000	46528000	233380000	150550000	82825000	337100000	198250000	138850000	149340000	79638000	69704000	39633	5090	37287	243102;243103;243104;243105;243106;243107;243108;243109	326228;326229;326230;326231;326232;326233;326234;326235;326236	326235			9	
NRFGAQQDTIEVPEK	1	Unmodified	1730.8588	0.85876208	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							2	3			39.168	37.976	3	0.00029833	30868	160511_QHF_FH_JSI9i_3	68.481	58.013			1.2028	1.4224	21.206	5	3	Median	1.7564	1.4549	3.2018	2	1	Median	0.89393	1.0855	23.047	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	324850000	164210000	160640000	109950000	48992000	60960000	214900000	115220000	99680000	0	0	0	0	0	0	39634	1674	37288	243110;243111;243112;243113;243114	326237;326238;326239;326240;326241;326242;326243	326239			7	
NRLEEVSPNLVR	0	Unmodified	1424.7736	0.77357588	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.25	0.433		3	1							1	2	1		41.086	40.088	3	0.0022325	33532	160511_QHF_FH_JSI10i_3	53.6	41.909			0.91231	1.0524	16.915	4	1	Median	1.4767	1.251	NaN	1	0	Median	0.90284	1.0524	5.0987	2	1	Median	0.84169	0.83371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214250000	89450000	124800000	70628000	24585000	46043000	101090000	45129000	55960000	42529000	19736000	22793000	0	0	0	39635	1306	37289	243115;243116;243117;243118	326244;326245;326246;326247;326248	326244			5	
NRLENDGATALAEAFR	0	Unmodified	1746.8649	0.86491009	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		64.503	63.955	3	0.01854	55831	160511_QHF_FH_JSI11i_2	30.083	26.661			1.9905	1.9868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9905	1.9868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53742000	20793000	32949000	0	0	0	0	0	0	53742000	20793000	32949000	0	0	0	39636	1578	37290	243119	326249	326249			1	
NRLPPEFSPVIIK	1	Unmodified	1508.8715	0.87149901	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			66.395	65.526	3	0.008606	57965	160511_QHF_FH_JSI10i_2	42.209	29.229			1.3917	1.4261	39.936	2	0	Median	2.223	1.8915	NaN	1	0	Median	0.87128	1.0753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55906000	23716000	32191000	24847000	7363000	17484000	31059000	16353000	14706000	0	0	0	0	0	0	39637	5147	37291	243120;243121	326250;326251;326252	326250			3	
NRMDGTYACSYTPVK	1	Unmodified	1761.7814	0.78143973	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			34.504	33.554	3	0.011263	29466	160511_QHF_FH_JSI10i_2	41.871	35.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39638	512	37292	243122	326253	326253			1	
NRPEAFPTAEDIFAK	1	Unmodified	1704.8471	0.84713476	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	65.748	65.748	3	0.0043748	58586	160511_QHF_FH_JSI11i_3	46.926	28.561			1.3359	1.2239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3359	1.2239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27912000	10431000	17481000	0	0	0	0	0	0	27912000	10431000	17481000	0	0	0	39639	3930	37293	243123;243124	326254;326255	326254			2	
NRPEDYQGGR	0	Unmodified	1190.5428	0.54284767	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		8	4					2		2	2	5	5	6.2849	5.3321	2;3	5.9184E-10	3735	160511_QHF_FH_JSI11i_3	142	111.83			0.93225	0.98212	13.383	13	0	Median	1.201	1.0269	0.97775	2	0	Median	0.62156	0.76554	1.5998	2	0	Median	0.99348	0.97791	8.3785	4	0	Median	0.8706	0.98212	11.473	5	0	Median	4749500000	2351400000	2398200000	623010000	294790000	328220000	720840000	370220000	350620000	1725900000	859970000	865970000	1679800000	826410000	853350000	39640	2628	37294	243125;243126;243127;243128;243129;243130;243131;243132;243133;243134;243135;243136;243137;243138	326256;326257;326258;326259;326260;326261;326262;326263;326264;326265;326266;326267;326268;326269;326270;326271;326272;326273;326274;326275;326276;326277;326278;326279	326256			24	
NRPGSALEK	1	Unmodified	970.51959	0.51959303	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.57	0.495		3	4							3	2	2		7.3974	7.0093	2;3	0.015397	4846	160511_QHF_FH_JSI10i_3	38.783	31.137			0.9917	0.92504	10.069	7	0	Median	1.229	1.0414	7.2248	3	0	Median	0.71114	0.84967	11.025	2	0	Median	0.95666	0.92434	0.10718	2	0	Median	NaN	NaN	NaN	0	0	Median	1453600000	641660000	811970000	829600000	309730000	519870000	439320000	248210000	191100000	184720000	83719000	101000000	0	0	0	39641	1379	37295	243139;243140;243141;243142;243143;243144;243145	326280;326281;326282	326280			3	
NRPLSDEELDAMFPEGYK	1	Unmodified	2109.9677	0.96772018	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		4	2							1	2		3	73.079	72.293	3	1.5237E-05	62522	160511_QHF_FH_JSI12i_3	82.449	73.63			0.95521	1.103	14.629	5	3	Median	1.3641	1.147	NaN	1	1	Median	0.80599	0.98583	25.757	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0056	1.098	0.64135	2	1	Median	257950000	155390000	102550000	26695000	12768000	13926000	141990000	89309000	52677000	0	0	0	89264000	53315000	35949000	39642	542	37296	243146;243147;243148;243149;243150;243151	326283;326284;326285;326286;326287;326288;326289	326289			7	
NRPPGAADNTAWAVMTPQELWK	1	Unmodified	2452.1958	0.19576305	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	85.671	85.519	3	9.8595E-07	74195	160511_QHF_FH_JSI12i_3	77.045	72.883			1.1988	1.2378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1988	1.2378	NaN	1	0	Median	49861000	20547000	29313000	0	0	0	0	0	0	0	0	0	49861000	20547000	29313000	39643	485	37297	243152	326290	326290			1	
NRPPLPAGTNSK	1	Unmodified	1250.6731	0.67313356	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.2		6	5					1	4	5	5	4	2	17.163	14.276	2;3	7.1239E-05	12013	160511_QHF_FH_JSI9i_2	118.28	87.708			1.0064	0.9182	20.495	16	3	Median	1.084	0.90006	25.369	5	1	Median	0.77543	0.91192	14.802	5	0	Median	0.91961	0.89613	13.021	4	1	Median	1.2737	1.3531	9.2483	2	1	Median	2494200000	1310600000	1183600000	883870000	422170000	461700000	1113500000	613170000	500290000	418270000	236570000	181710000	78593000	38715000	39878000	39644	1526;1527	37298	243153;243154;243155;243156;243157;243158;243159;243160;243161;243162;243163;243164;243165;243166;243167;243168	326291;326292;326293;326294;326295;326296;326297;326298;326299;326300;326301;326302;326303;326304;326305;326306;326307;326308;326309;326310;326311	326300			21	
NRPSVPPPPQPPGVHSAGDSSLTNTAPTASK	1	Unmodified	3063.5374	0.53737494	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			48.676	47.095	4	2.1525E-06	38620	160511_QHF_FH_JSI9i_3	46.783	44.342			1.4837	1.2013	16.974	3	2	Plateau	1.4846	1.2013	NaN	1	0	Median	0.8394	0.94874	14.309	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72001000	33593000	38408000	36520000	17384000	19137000	35480000	16209000	19271000	0	0	0	0	0	0	39645	3029	37299	243169;243170;243171	326312;326313;326314;326315;326316	326315			5	
NRPTSISWDGLDSGK	1	Unmodified	1631.7903	0.79034816	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.31		8	9						4	5	6	5	5	49.896	47.344	2;3	6.1916E-10	41791	160511_QHF_FH_JSI11i_3	114.63	107.95			0.84484	0.90155	13.891	21	1	Median	1.2666	1.1005	15.817	5	0	Median	0.78872	0.90966	6.2022	6	1	Median	0.86491	0.81649	8.0622	5	0	Median	0.84484	0.87205	13.289	5	0	Median	9561700000	4848300000	4713400000	1963100000	818070000	1145000000	3574500000	1930100000	1644500000	3475000000	1818200000	1656800000	549100000	281980000	267120000	39646	1343	37300	243172;243173;243174;243175;243176;243177;243178;243179;243180;243181;243182;243183;243184;243185;243186;243187;243188;243189;243190;243191;243192	326317;326318;326319;326320;326321;326322;326323;326324;326325;326326;326327;326328;326329;326330;326331;326332;326333;326334;326335;326336;326337;326338;326339;326340;326341;326342;326343;326344;326345;326346;326347;326348;326349;326350;326351;326352;326353;326354;326355;326356;326357;326358;326359;326360;326361;326362	326320			46	
NRQEVPAFTEPDTTAEVK	1	Unmodified	2030.9909	0.99089846	2695	Q15650	TRIP4	Activating signal cointegrator 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		45.821	45.821	3	0.00022804	40535	160511_QHF_FH_JSI11i_3	73.809	68.085			1.2819	1.2153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2819	1.2153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25398000	14435000	10963000	0	0	0	0	0	0	25398000	14435000	10963000	0	0	0	39647	2695	37301	243193	326363	326363			1	
NRQEYEDIAVK	1	Unmodified	1363.6732	0.67319314	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	25.234	24.883	2;3	0.0038502	20495	160511_QHF_FH_JSI12i_3	70.1	43.586			1.3471	1.3093	45.075	3	2	Median	0.74192	0.63589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5872	1.4559	NaN	1	1	Median	1.3471	1.3093	NaN	1	0	Median	94309000	36149000	58160000	20882000	11139000	9743200	0	0	0	28368000	5823400	22545000	45059000	19187000	25872000	39648	274	37302	243194;243195;243196	326364;326365;326366;326367	326366			4	
NRTNMTYEKMSRALR	1	Acetyl (K);2 Oxidation (M)	1943.9306	0.93056359	1511	P41212	ETV6	Transcription factor ETV6	yes	yes	1	0	2	3				By MS/MS	16	0									1				1	105.65	96.212	2	0.013669	52805	160513_QHF_FH_JSI12Kac_6	43.084	9.1986			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7023400	0	7023400	0	0	0	0	0	0	0	0	0	7023400	0	7023400	39649	1511	37303	243197	326368	326368	1540	1189;1190	1	
NRTPSDVK	1	Unmodified	915.47739	0.47739386	1487	P39687;O95626	ANP32A;ANP32D	Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D	yes	no	0	0	0	1		By MS/MS			2	0		1									1			4.9187	4.5117	3	0.015913	2523	160511_QHF_FH_JSI10i_2	36.334	18.948			1.0605	1.2703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0605	1.2703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1430000000	783310000	646700000	0	0	0	1430000000	783310000	646700000	0	0	0	0	0	0	39650	1487	37304	243198	326369	326369			1	
NRVMMVAKKFLDAGHK	3	Acetyl (K);2 Oxidation (M)	1917.9917	0.99170728	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	2	3	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	88.741	79.601	2	0.045295	42691	160513_QHF_FH_JSI12Kac_6	30.872	16.615			1.0958	0.92618	39.282	3	0	Median	1.0958	0.92618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77844	0.73135	NaN	1	0	Median	1.4981	1.5748	NaN	1	0	Median	468090000	176910000	291180000	126190000	61309000	64878000	0	0	0	145730000	58497000	87229000	196180000	57102000	139080000	39651	1344	37305	243199;243200;243201	326370	326370	1272		1	
NRVPSAGDVEK	1	Unmodified	1170.5993	0.59929991	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			13.819	13.191	3	0.0022366	10948	160511_QHF_FH_JSI10i_2	43.297	33.245			0.88854	0.89151	22.528	2	0	Median	0.91165	0.76023	NaN	1	0	Median	0.86601	1.0455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128840000	62089000	66747000	63661000	30509000	33152000	65176000	31580000	33596000	0	0	0	0	0	0	39652	2707	37306	243202;243203	326371;326372;326373	326373			3	
NRVPYVK	1	Unmodified	874.50249	0.5024864	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	1		By MS/MS			3	0			1								1			14.167	13.322	3	0.020072	10638	160511_QHF_FH_JSI10i_3	38.792	30.019			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39653	1400	37307	243204	326374	326374			1	
NRVQNMALYADVGGK	1	Unmodified	1634.8199	0.81987415	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				44.915	43.314	3	0.00090821	35424	160511_QHF_FH_JSI9i_3	67.136	57.882			0.91177	0.75363	NaN	1	1	Median	0.91177	0.75363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28389000	16890000	11499000	28389000	16890000	11499000	0	0	0	0	0	0	0	0	0	39654	1740	37308	243205	326375	326375			1	
NRWLSDSFK	1	Unmodified	1151.5724	0.57235688	3226	Q7L4E1	FAM73B	Protein FAM73B	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		5.3076	-4.0566	3	0.060564	1638	160513_QHF_FH_JSI11Kac_6	27.742	16.913			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39655	3226	37309	243206	326376	326376			1	
NSAEEEVLSSEK	1	Unmodified	1320.6045	0.60450445	617	O94880	PHF14	PHD finger protein 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.205	28.88	2	0.0088461	25747	160511_QHF_FH_JSI12i_1	48.568	36.72			0.29057	0.32953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29057	0.32953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23550000	17688000	5862300	0	0	0	23550000	17688000	5862300	0	0	0	0	0	0	39656	617	37310	243207;243208;243209	326377;326378;326379	326378			3	
NSAEGTEYFK	1	Unmodified	1144.5037	0.50366819	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			24.648	24.354	2	0.015071	21430	160511_QHF_FH_JSI10i_1	51.872	46.907			1.9947	2.371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9947	2.371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59782000	17055000	42727000	0	0	0	59782000	17055000	42727000	0	0	0	0	0	0	39657	2793	37311	243210	326380	326380			1	
NSAESEGMRR	0	Unmodified	1135.504	0.50401932	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			5.1614	4.761	2	0.014651	2821	160511_QHF_FH_JSI10i_2	43.083	30.847			0.93661	0.98729	16.866	2	0	Median	1.2305	1.1123	NaN	1	0	Median	0.71292	0.87629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81140000	39694000	41446000	47520000	18447000	29073000	33620000	21247000	12373000	0	0	0	0	0	0	39658	4930	37312	243211;243212	326381	326381			1	
NSAFESLYQDK	1	Unmodified	1300.5935	0.59354583	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	2	3	3	49.433	48.457	2	2.4823E-06	41407	160511_QHF_FH_JSI12i_2	117.99	102.32			0.84504	0.79047	48.704	6	5	Median	1.0119	0.8913	NaN	1	0	Median	0.53869	0.66919	NaN	1	1	Median	1.1173	1.1229	66.621	2	2	Median	0.79435	0.88687	74.69	2	2	Median	520160000	269780000	250380000	102790000	42844000	59950000	60509000	42648000	17861000	185170000	91155000	94013000	171680000	93130000	78555000	39659	552	37313	243213;243214;243215;243216;243217;243218;243219;243220;243221	326382;326383;326384;326385;326386;326387;326388;326389;326390;326391	326383			10	
NSALSAQLR	0	Unmodified	958.51959	0.51959303	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.13		3					1	1		1	1	2	1	26.893	22.688	2	0.0002745	18984	160511_QHF_FH_JSI11i_2	83.783	56.529			1.1496	1.0933	60.514	5	2	Median	1.3077	1.0933	NaN	1	0	Median	0.26343	0.32573	NaN	1	1	Median	0.88819	0.88971	33.49	2	0	Median	1.401	1.5554	NaN	1	1	Median	482520000	249150000	233370000	4347100	1740000	2607100	101250000	67914000	33338000	234490000	105730000	128750000	142430000	73763000	68666000	39660	1609	37314	243222;243223;243224;243225;243226	326392;326393;326394;326395;326396;326397;326398	326397			7	
NSAQGNVYVK	1	Unmodified	1078.5407	0.5407224	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	16.114	11.255	2	4.7043E-06	10005	160511_QHF_FH_JSI10i_1	109.48	95.321			1.0379	1.0225	17.904	10	1	Median	1.073	0.86902	NaN	1	0	Median	0.85756	0.99374	16.603	3	1	Plateau	1.2742	1.2612	18.526	3	0	Median	0.84268	0.88283	15.229	3	0	Plateau	1457000000	691720000	765280000	397850000	183750000	214100000	337210000	183130000	154090000	405590000	153000000	252590000	316360000	171850000	144510000	39661	2538	37315	243227;243228;243229;243230;243231;243232;243233;243234;243235;243236	326399;326400;326401;326402;326403;326404;326405;326406;326407;326408;326409;326410;326411;326412;326413;326414	326406			16	
NSASATTPLSGNSSR	0	Unmodified	1448.6855	0.68554874	5695	Q9Y608	LRRFIP2	Leucine-rich repeat flightless-interacting protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		15.233	15.049	2	0.00083446	12653	160511_QHF_FH_JSI10i_1	65.295	49.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39662	5695	37316	243237;243238	326415;326416	326416			2	
NSASVQNSSVAVLSVNHIK	1	Unmodified	1953.028	0.02795267	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	2	1	1	1	53.207	50.6	3	2.4375E-06	44640	160511_QHF_FH_JSI10i_2	91.547	86.878			1.2051	1.0093	35.358	5	4	Median	1.3199	1.1188	14.569	2	2	Median	1.2875	1.5748	NaN	1	0	Median	0.66161	0.66076	NaN	1	1	Median	0.66722	0.7594	NaN	1	1	Median	156110000	85440000	70670000	36986000	18362000	18624000	38726000	20650000	18076000	45366000	27574000	17793000	35032000	18855000	16177000	39663	489	37317	243239;243240;243241;243242;243243	326417;326418;326419;326420;326421;326422	326420			6	
NSDADFQNNEK	1	Unmodified	1280.5269	0.52692283	4174	Q96MF7	NSMCE2	E3 SUMO-protein ligase NSE2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.731	10.145	2	1.506E-06	7991	160511_QHF_FH_JSI12i_1	113.44	105.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39664	4174	37318	243244;243245	326423;326424	326423			2	
NSDDTVTWDEYNIQMYDR	0	Unmodified	2263.9328	0.93279124	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	75.046	74.693	2	2.2964E-53	67957	160511_QHF_FH_JSI12i_1	223.72	220			1.0627	1.2511	12.833	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87872	1.0481	NaN	1	0	Median	1.3035	1.2511	NaN	1	1	Median	1.2852	1.345	NaN	1	0	Median	122400000	59678000	62726000	0	0	0	44030000	24876000	19154000	40336000	19043000	21293000	38038000	15759000	22279000	39665	2524	37319	243246;243247;243248	326425;326426;326427;326428;326429	326427			5	
NSDEADLVPAK	1	Unmodified	1157.5564	0.55643205	2123	P83916	CBX1	Chromobox protein homolog 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		28.529	27.789	2	0.005894	24631	160511_QHF_FH_JSI11i_1	62.633	47.964			0.85392	0.77544	24.344	2	2	Median	0.78859	0.65281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92465	0.9211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	272150000	146160000	125990000	141310000	76826000	64481000	0	0	0	130840000	69333000	61507000	0	0	0	39666	2123	37320	243249;243250	326430;326431	326430			2	
NSDIEQSSDSK	1	Unmodified	1208.5157	0.51568944	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.48	6				5					2	3	4	2	7.3135	3.83	2	3.2006E-13	4534	160511_QHF_FH_JSI12i_1	149.96	120.81			0.7526	0.77557	58.554	11	9	Median	1.2673	1.0557	55.36	2	2	Median	0.69134	0.80422	76.376	3	2	Median	1.0876	1.0659	75.891	4	4	Median	0.74594	0.77417	0.25534	2	1	Median	918970000	449410000	469560000	286830000	127680000	159150000	172640000	87221000	85415000	268230000	128250000	139980000	191270000	106250000	85020000	39667	1685;31;191	37321	243251;243252;243253;243254;243255;243256;243257;243258;243259;243260;243261	326432;326433;326434;326435;326436;326437;326438;326439;326440;326441;326442;326443;326444	326437			13	
NSDSILEAIQK	1	Unmodified	1216.6299	0.62993134	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				59.905	58.919	2	0.0091892	51778	160511_QHF_FH_JSI9i_2	58.63	39.85			0.89913	0.76226	NaN	1	1	Median	0.89913	0.76226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26847000	16782000	10065000	26847000	16782000	10065000	0	0	0	0	0	0	0	0	0	39668	1158	37322	243262	326445	326445			1	
NSDVLQSPLDSAARDEL	0	Unmodified	1828.8803	0.88028538	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.635	72.122	2	3.9668E-21	65368	160511_QHF_FH_JSI10i_1	173.06	133.79			0.96279	1.0012	20.911	4	1	Median	0.97125	0.80132	NaN	1	0	Median	0.86502	1.0074	NaN	1	0	Median	1.3489	1.3345	NaN	1	0	Median	0.9544	0.99511	NaN	1	1	Median	550220000	271670000	278540000	156020000	72655000	83364000	155200000	88393000	66804000	135540000	58626000	76916000	103460000	52000000	51458000	39669	3593	37323	243263;243264;243265;243266	326446;326447;326448;326449;326450	326448			5	
NSEEQYNK	1	Unmodified	1010.4305	0.43050325	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	5.2762	5.0475	2	9.1874E-05	3017	160511_QHF_FH_JSI10i_1	130.77	84.75			0.93767	0.97872	10.629	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90642	1.0708	NaN	1	0	Median	1.209	1.207	NaN	1	0	Median	0.93767	0.97641	NaN	1	0	Median	428470000	195280000	233180000	0	0	0	143890000	77284000	66610000	131580000	55048000	76529000	153000000	62952000	90045000	39670	1532	37324	243267;243268;243269	326451	326451			1	
NSEGLHSAR	0	Unmodified	969.46281	0.46280643	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.88		8						2	6	5	3	4	4	4.8904	0.60701	2;3	0.00011149	2250	160511_QHF_FH_JSI12i_2	92.732	57.483			1.1468	1.1277	13.524	16	0	Median	1.3926	1.19	5.3173	5	0	Median	1.0006	1.2205	17.954	3	0	Median	0.86547	0.90273	16.516	4	0	Linear	0.88991	1.0025	12.277	4	0	Median	4289900000	1995200000	2294700000	667540000	266530000	401010000	1121200000	602410000	518810000	1716100000	767770000	948290000	785100000	358520000	426580000	39671	1604	37325	243270;243271;243272;243273;243274;243275;243276;243277;243278;243279;243280;243281;243282;243283;243284;243285	326452;326453;326454;326455;326456;326457;326458;326459;326460;326461;326462;326463;326464;326465;326466;326467;326468;326469;326470;326471	326452			20	
NSEPAGLETPEAK	1	Unmodified	1341.6412	0.64122431	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.74	7				3	3				2	3	4	4	30.773	26.802	2	1.6939E-15	23700	160511_QHF_FH_JSI10i_1	163.46	154.51			0.69991	0.75497	31.439	12	8	Median	0.82197	0.65974	71.982	2	2	Median	0.65269	0.7624	37.059	3	1	Median	0.74478	0.74761	10.409	3	3	Median	0.67378	0.72083	23.065	4	2	Median	2080600000	1184900000	895650000	432490000	206860000	225630000	351810000	238350000	113460000	559720000	325040000	234670000	736540000	414650000	321890000	39672	878	37326	243286;243287;243288;243289;243290;243291;243292;243293;243294;243295;243296;243297;243298	326472;326473;326474;326475;326476;326477;326478;326479;326480;326481;326482;326483;326484;326485;326486;326487;326488;326489;326490;326491;326492;326493;326494;326495	326484			24	
NSEPEEVIPSR	0	Unmodified	1255.6044	0.60444487	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	1	2	33.024	29.72	2	1.8944E-09	26418	160511_QHF_FH_JSI11i_1	132.25	95.058			0.85631	0.90722	4.6805	6	2	Median	1.1895	0.97297	NaN	1	0	Median	0.77821	0.90412	2.1489	2	1	Median	0.88794	0.85389	NaN	1	0	Median	0.85631	0.92213	3.97	2	1	Median	1241400000	634970000	606390000	310980000	137440000	173540000	329770000	188040000	141740000	307320000	157360000	149960000	293280000	152130000	141150000	39673	1823	37327	243299;243300;243301;243302;243303;243304	326496;326497;326498;326499;326500;326501;326502;326503;326504;326505	326497			10	
NSEPEEVIPSRLDIR	0	Unmodified	1752.9006	0.90062689	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By matching		2	0		2									1	1		58.164	57.469	3	0.0047993	50821	160511_QHF_FH_JSI10i_2	45.723	34.25			0.87472	0.97064	50.747	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1395	1.3896	NaN	1	0	Median	0.67146	0.67798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156070000	87739000	68329000	0	0	0	85479000	41783000	43696000	70588000	45956000	24633000	0	0	0	39674	1823	37328	243305;243306	326506	326506			1	
NSEQETLQK	1	Unmodified	1075.5146	0.51456723	12	A2RRP1	NBAS	Neuroblastoma-amplified sequence	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.9673	8.6693	2	0.0047639	6288	160511_QHF_FH_JSI11i_1	57.96	35.22			0.91448	1.0052	9.8936	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81985	0.93732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.02	1.0781	NaN	1	0	Median	179290000	85740000	93548000	0	0	0	117940000	62225000	55711000	0	0	0	61352000	23515000	37837000	39675	12	37329	243307;243308;243309	326507;326508;326509;326510	326507			4	
NSESVDQGAKPESK	2	Unmodified	1474.69	0.68996541	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	3											1	2	7.5977	7.2456	2	0.0075038	5125	160511_QHF_FH_JSI12i_1	97.463	80.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24244000	11753000	12491000	0	0	0	0	0	0	0	0	0	24244000	11753000	12491000	39676	4975	37330	243310;243311;243312	326511;326512;326513	326512			3	
NSETFPTILEEAK	1	Unmodified	1477.73	0.73003931	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				69.76	68.89	2	0.00016683	60748	160511_QHF_FH_JSI9i_2	82.85	73.846			0.94769	0.82698	NaN	1	0	Median	0.94769	0.82698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32104000	18626000	13478000	32104000	18626000	13478000	0	0	0	0	0	0	0	0	0	39677	432	37331	243313	326514;326515	326515			2	
NSFTPLSSSNTIR	0	Unmodified	1422.7103	0.71030693	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	46.212	45.233	2	5.8725E-05	39818	160511_QHF_FH_JSI10i_2	75.695	56.424			0.92398	1.251	28.683	4	2	Linear	1.7719	1.5097	NaN	1	1	Median	1.4503	1.7646	NaN	1	1	Median	1.0513	1.0367	NaN	1	0	Median	0.9012	0.97865	NaN	1	0	Median	149110000	72291000	76814000	21539000	8755500	12784000	22938000	9955100	12983000	47114000	23612000	23502000	57514000	29968000	27546000	39678	449	37332	243314;243315;243316;243317;243318	326516;326517;326518;326519;326520;326521;326522;326523	326523			8	
NSGEVMTVGINAIK	1	Unmodified	1431.7392	0.73916421	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			61.413	61.024	2	0.00097931	55182	160511_QHF_FH_JSI10i_1	83.226	65.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13320000	13320000	0	0	0	0	13320000	13320000	0	0	0	0	0	0	0	39679	5051	37333	243319	326524	326524			1	
NSGGFLSKDK	2	Acetyl (K)	1093.5404	0.54038805	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.855	31.812	2	0.049799	19211	160513_QHF_FH_JSI11Kac_4	50.108	16.73			0.05819	0.058415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.05819	0.058415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4235500	3839000	396530	0	0	0	0	0	0	4235500	3839000	396530	0	0	0	39680	6	37334	243320	326525	326525			1	
NSGLSKEQK	2	Acetyl (K)	1031.5247	0.52473799	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.75					2	4	5			1	3	3	4	13.86	5.27	2	0.0023057	5671	160513_QHF_FH_JSI10Kac_3	84.615	56.396			0.81551	0.88737	52.435	10	1	Median	1.0469	0.8967	NaN	1	0	Median	0.7519	0.89417	7.6557	3	0	Plateau	2.1263	2.1008	106.38	2	1	Median	0.81551	0.87061	8.077	4	0	Median	812130000	416290000	395830000	423850000	210190000	213660000	143920000	80870000	63053000	92581000	47908000	44673000	151780000	77324000	74452000	39681	666	37335	243321;243322;243323;243324;243325;243326;243327;243328;243329;243330;243331	326526;326527;326528;326529;326530;326531;326532;326533;326534;326535;326536;326537;326538;326539;326540	326538	331		15	
NSGLVSITSR	0	Unmodified	1032.5564	0.55637247	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS		By MS/MS		15	0								2		1		1		42.271	32.225	2	0.0094323	17759	160513_QHF_FH_JSI9Kac_5	56.548	45.682			1.0145	0.83693	NaN	1	0	Median	1.0145	0.83693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5268700	2432100	2836500	5268700	2432100	2836500	0	0	0	0	0	0	0	0	0	39682	3765	37336	243332;243333	326541;326542	326541			2	
NSGMPPGAAAIAVLPVTLDTPMNRK	1	Unmodified	2520.3192	0.31924901	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			96.551	96.394	3	0.0027953	84599	160511_QHF_FH_JSI9i_2	35.628	24.79			1.4583	1.4925	3.8879	2	2	Median	1.7291	1.5341	NaN	1	1	Median	1.2299	1.4521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32912000	12184000	20728000	15773000	5545000	10228000	17139000	6638800	10500000	0	0	0	0	0	0	39683	927	37337	243334;243335	326543;326544	326543			2	
NSGNFQK	1	Unmodified	793.37187	0.37186616	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		5.5971	5.2506	2	0.013779	3317	160511_QHF_FH_JSI10i_2	69.093	47.547			0.96443	0.95611	32.143	3	1	Plateau	0.97696	0.85985	NaN	1	0	Median	1.2819	1.5701	NaN	1	1	Median	0.96443	0.95611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	463920000	251670000	212250000	128610000	70933000	57672000	129760000	56127000	73636000	205550000	124600000	80945000	0	0	0	39684	1579	37338	243336;243337;243338	326545;326546;326547	326547			3	
NSGPLGTEMNTGFSSEVK	1	Unmodified	1853.8465	0.84654241	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	3	1	59.991	59.332	2	7.7776E-14	52583	160511_QHF_FH_JSI9i_1	189.07	171.26			0.92762	0.99228	16.742	6	4	Median	1.1874	0.9922	NaN	1	1	Median	0.90281	1.0787	11.798	2	1	Median	0.86512	0.84444	25.292	2	1	Median	0.90357	0.9274	NaN	1	1	Median	661070000	344920000	316140000	147550000	71092000	76455000	187140000	92774000	94371000	153210000	84393000	68817000	173160000	96663000	76501000	39685	5474	37339	243339;243340;243341;243342;243343;243344;243345;243346	326548;326549;326550;326551;326552;326553;326554;326555;326556;326557;326558	326554			11	
NSGQNLEEDMGQSEQK	1	Unmodified	1792.7534	0.75337031	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	3	2	26.735	26.162	2;3	7.1823E-30	22908	160511_QHF_FH_JSI11i_1	185.87	152			0.92212	0.94736	15.854	8	0	Median	0.97412	0.79765	13.189	2	0	Median	0.92212	1.1	2.66	2	0	Median	0.95902	0.93483	19.655	2	0	Median	0.90235	0.93748	12.62	2	0	Median	784670000	421940000	362720000	186430000	100610000	85827000	226640000	119730000	106900000	200160000	113140000	87022000	171440000	88466000	82973000	39686	4832	37340	243347;243348;243349;243350;243351;243352;243353;243354;243355;243356	326559;326560;326561;326562;326563;326564;326565;326566;326567;326568;326569;326570	326560			11	
NSGQNLEEDMGQSEQK	1	Oxidation (M)	1808.7483	0.74828493	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	2									1			1	27.106	26.198	2	5.1578E-10	22674	160511_QHF_FH_JSI9i_1	145.81	128.01			0.97511	0.89679	21.492	2	0	Median	1.3164	1.044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72232	0.77035	NaN	1	0	Median	49377000	23829000	25548000	26160000	10797000	15363000	0	0	0	0	0	0	23217000	13032000	10185000	39687	4832	37340	243357;243358	326571;326572;326573	326572		2535	3	
NSGSGTCLTSQDK	1	Unmodified	1353.5831	0.5830575	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	10.235	9.9255	2	0.002723	7699	160511_QHF_FH_JSI10i_1	57.802	45.755			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39688	3620	37341	243359;243360	326574;326575	326575			2	
NSGVISVK	1	Unmodified	802.45487	0.45486751	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	18.469	17.896	2	0.036037	14917	160511_QHF_FH_JSI9i_1	40.352	22.503			1.1503	1.0742	23.738	3	0	Median	1.2963	1.0742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1503	1.1175	NaN	1	0	Median	0.69542	0.7273	NaN	1	0	Median	659540000	330340000	329200000	152010000	72969000	79043000	0	0	0	268950000	126010000	142940000	238580000	131370000	107220000	39689	479	37342	243361;243362;243363	326576	326576			1	
NSGVLMVVK	1	Unmodified	945.53174	0.53173762	3298	Q7Z7K0	CMC1	COX assembly mitochondrial protein homolog	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			54.841	44.294	2	0.037082	22616	160513_QHF_FH_JSI10Kac_5	52.482	37.043			0.12859	0.14749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.12859	0.14749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2221000	1979300	241710	0	0	0	2221000	1979300	241710	0	0	0	0	0	0	39690	3298	37343	243364	326577	326577			1	
NSHLINVLMWELEK	1	Unmodified	1724.892	0.89197646	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	3.59			1						11	4	3	1	4	91.59	84.294	2;3	1.8837E-24	47772	160513_QHF_FH_JSI10Kac_6	202.32	179.09			1.9819	1.9466	247.87	8	8	Median	0.68793	0.58432	285.21	2	2	Median	8.6223	10.164	327.69	3	3	Median	NaN	NaN	NaN	0	0	Median	0.74863	0.86304	234.33	3	3	Median	1338200000	514940000	823300000	338810000	172910000	165900000	649550000	158850000	490710000	36204000	36204000	0	313670000	146980000	166700000	39691	283	37344	243365;243366;243367;243368;243369;243370;243371;243372;243373;243374;243375;243376	326578;326579;326580;326581;326582;326583;326584;326585;326586;326587;326588;326589;326590	326590			13	
NSHSLYLAGIFR	0	Unmodified	1376.7201	0.72008375	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		72.802	64.776	2;3	3.9242E-09	35539	160513_QHF_FH_JSI10Kac_6	96.745	70.627			0.98941	0.99558	19.176	2	0	Median	1.0307	0.86934	NaN	1	0	Median	0.94975	1.1402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155230000	84144000	71082000	59952000	28569000	31383000	95273000	55575000	39698000	0	0	0	0	0	0	39692	5234	37345	243377;243378;243379	326591;326592;326593;326594	326593			4	
NSIEDIHAFAIR	0	Unmodified	1384.7099	0.709913	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	60.004	59.091	3	0.0048033	50766	160511_QHF_FH_JSI12i_2	34.685	30.613			1.1162	1.1783	7.2024	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1163	1.1198	NaN	1	0	Median	1.1161	1.2399	NaN	1	0	Median	62307000	28355000	33952000	0	0	0	0	0	0	33886000	16178000	17708000	28420000	12177000	16244000	39693	4975	37346	243380;243381	326595	326595			1	
NSILAQVLDQSAR	0	Unmodified	1413.7576	0.75759147	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.34		4	2					6	4	4	3	5	4	80.488	74.278	2	4.406E-22	67571	160511_QHF_FH_JSI12i_2	174.23	146.02			0.99029	1.0153	33.182	16	3	Median	1.27	1.1013	23.901	4	1	Median	0.75411	0.86663	24.052	3	0	Median	0.99755	0.94697	42.268	5	2	Median	1.1884	1.2431	26.503	4	0	Median	2092600000	973400000	1119200000	347140000	138530000	208610000	535070000	293100000	241970000	651600000	276160000	375450000	558770000	265620000	293150000	39694	196	37347	243382;243383;243384;243385;243386;243387;243388;243389;243390;243391;243392;243393;243394;243395;243396;243397	326596;326597;326598;326599;326600;326601;326602;326603;326604;326605;326606;326607;326608;326609;326610;326611;326612;326613;326614;326615;326616;326617;326618;326619;326620;326621;326622;326623;326624;326625;326626	326599			31	
NSILASSGFGAPLPSSSQPLTFGSGR	0	Unmodified	2534.2765	0.2765158	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		93.734	93.338	3	0.013528	81982	160511_QHF_FH_JSI11i_2	30.509	26.156			1.2876	1.266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2876	1.266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12770000	5050700	7719000	0	0	0	0	0	0	12770000	5050700	7719000	0	0	0	39695	3239	37348	243398	326627	326627			1	
NSILFLNSLDAK	1	Unmodified	1333.7242	0.72416608	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			83.984	73.588	2	0.0057884	36527	160513_QHF_FH_JSI10Kac_5	62.303	52.615			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39696	3439	37349	243399	326628	326628			1	
NSIPEPIDPLFK	1	Unmodified	1368.7289	0.7289171	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	79.115	78.633	2	0.00033032	71514	160511_QHF_FH_JSI11i_1	72.275	62.494			0.87942	0.90839	7.8569	5	4	Median	1.1083	0.90839	NaN	1	1	Median	0.87296	1.0106	NaN	1	1	Median	0.89556	0.88815	NaN	1	0	Median	0.82368	0.86181	8.587	2	2	Median	606510000	306830000	299680000	123400000	58978000	64425000	100200000	55956000	44243000	134650000	68325000	66326000	248260000	123570000	124680000	39697	1685;31;191	37350	243400;243401;243402;243403;243404	326629;326630;326631;326632;326633;326634	326630			6	
NSIPLQLPVEALQK	1	Unmodified	1548.8875	0.88754301	3535	Q8N531	FBXL6	F-box/LRR-repeat protein 6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	89.162	88.697	2	0.0087289	80748	160511_QHF_FH_JSI12i_1	48.004	36.138			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39698	3535	37351	243405	326635	326635			1	
NSIQFTDGYEVK	1	Unmodified	1399.662	0.66195975	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	50.931	50.148	2	1.3206E-12	45143	160511_QHF_FH_JSI10i_1	155.26	113.84			1.1581	1.1506	30.567	5	2	Median	1.0546	0.86563	51.134	2	2	Median	0.78564	0.92516	NaN	1	0	Median	1.1875	1.1506	NaN	1	0	Median	1.1581	1.2361	NaN	1	0	Median	379410000	186110000	193300000	132650000	68940000	63707000	89287000	50533000	38753000	97113000	43985000	53129000	60368000	22653000	37715000	39699	1755	37352	243406;243407;243408;243409;243410	326636;326637;326638;326639;326640;326641	326639			6	
NSITVPYK	1	Unmodified	920.49673	0.49673232	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	32.836	32.428	2	0.025539	28956	160511_QHF_FH_JSI11i_1	52.716	32.196			0.82237	0.81715	2.6627	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86188	0.83268	NaN	1	1	Median	0.78468	0.80191	NaN	1	0	Median	216610000	128860000	87748000	0	0	0	0	0	0	159520000	103520000	56004000	57082000	25338000	31744000	39700	2152	37353	243411;243412	326642;326643;326644;326645	326642			4	
NSITVPYKVWAK	2	Acetyl (K)	1446.7871	0.78710068	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.083	69.516	2	0.007448	36837	160513_QHF_FH_JSI11Kac_5	64.297	48.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1799700	1799700	0	0	0	0	0	0	0	1799700	1799700	0	0	0	0	39701	2152	37354	243413	326646	326646	2257		1	
NSIVNSQPPEK	1	Unmodified	1211.6146	0.61461563	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.595	19.485	2	5.2072E-06	16463	160511_QHF_FH_JSI10i_1	106.62	85.918			0.85961	0.85803	0.378	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88435	0.85574	NaN	1	0	Median	0.83556	0.86032	NaN	1	0	Median	72970000	43251000	29719000	0	0	0	0	0	0	1514900	719320	795570	71455000	42531000	28924000	39702	5327	37355	243414;243415;243416;243417;243418	326647;326648;326649;326650;326651;326652	326651			6	
NSIYSGLEAFGDVK	1	Unmodified	1498.7304	0.73037367	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	77.259	76.359	2	3.1117E-10	67071	160511_QHF_FH_JSI11i_2	112.43	96.858			0.85793	0.7871	52.705	3	3	Median	0.90245	0.7871	NaN	1	1	Median	0.29628	0.34876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85793	0.9358	NaN	1	1	Median	71876000	42819000	29057000	24173000	10474000	13699000	16629000	13369000	3260700	0	0	0	31074000	18976000	12098000	39703	2170	37356	243419;243420;243421;243422;243423	326653;326654;326655;326656;326657	326655			5	
NSKPDSLLK	2	Acetyl (K)	1042.5659	0.56587452	483	O75151	PHF2	Lysine-specific demethylase PHF2	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			45.201	36.032	2	0.032402	19445	160513_QHF_FH_JSI10Kac_3	47.603	26.303			2.3135	2.729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3135	2.729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2454300	985040	1469200	0	0	0	2454300	985040	1469200	0	0	0	0	0	0	39704	483	37357	243424	326658	326658			1	
NSKYILSSGK	2	Acetyl (K)	1137.603	0.60298831	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.972	33.755	2	0.0043562	20247	160513_QHF_FH_JSI11Kac_4	76.927	60.151			0.061254	0.060458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.061254	0.060458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4688100	4538800	149290	0	0	0	0	0	0	4688100	4538800	149290	0	0	0	39705	2226	37358	243425	326659	326659	2338		1	
NSLDCEIVSAK	1	Unmodified	1234.5864	0.58635197	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.568	37.156	2	9.9274E-06	33238	160511_QHF_FH_JSI10i_1	126.39	78.519			1.0462	1.0438	40.243	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.53043	0.62143	NaN	1	1	Median	0.81328	0.79776	NaN	1	0	Median	1.3459	1.3658	NaN	1	0	Median	510910000	272060000	238850000	0	0	0	159830000	107100000	52732000	173420000	99046000	74373000	177660000	65917000	111740000	39706	2169	37359	243426;243427;243428	326660;326661;326662	326662			3	
NSLDDSAK	1	Unmodified	848.38758	0.3875758	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	5	5.66	4					2				1	2	2	1	6.4563	3.7971	2	0.0035769	3964	160511_QHF_FH_JSI12i_1	71.501	27.693			0.91231	0.93248	5.6639	6	0	Median	1.1361	0.94785	NaN	1	0	Median	0.81741	0.95792	6.117	2	0	Median	0.91231	0.89057	0.56563	2	0	Median	0.95005	1.0136	NaN	1	0	Median	1366300000	708920000	657330000	210750000	101540000	109200000	400420000	217910000	182510000	406290000	201470000	204820000	348800000	188000000	160800000	39707	2596	37360	243429;243430;243431;243432;243433;243434	326663;326664;326665;326666	326664			4	
NSLDSFGGR	0	Unmodified	951.44101	0.44100836	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	24.378	23.587	2	0.034013	19632	160511_QHF_FH_JSI12i_2	39.305	19.528			1.0485	1.1105	39.914	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4325	1.4726	NaN	1	0	Median	0.76747	0.83741	NaN	1	0	Median	97147000	52778000	44369000	0	0	0	0	0	0	58391000	30344000	28047000	38755000	22433000	16322000	39708	2880	37361	243435;243436	326667	326667			1	
NSLEFFTVLAQR	0	Unmodified	1423.746	0.74596415	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		19.657	19.657	4	0.0172	16440	160511_QHF_FH_JSI11i_3	36.847	15.99			0.13899	0.12757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13899	0.12757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69588000	61866000	7722000	0	0	0	0	0	0	69588000	61866000	7722000	0	0	0	39709	4481	37362	243437	326668	326668			1	
NSLESSGVR	0	Unmodified	947.46722	0.46722311	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.43	4.34	2	4					1			1	2	2	2	11.005	9.5911	2	0.013473	7894	160511_QHF_FH_JSI10i_1	46.462	29.076			1.0488	1.0354	14.32	7	0	Median	1.1294	0.9824	NaN	1	0	Median	0.9175	1.0937	14.759	2	0	Median	1.1813	1.1572	15.723	2	0	Median	0.97434	1.067	24.02	2	0	Median	374500000	196210000	178280000	33779000	17612000	16167000	134290000	74132000	60160000	153020000	75376000	77645000	53404000	29094000	24310000	39710	2997	37363	243438;243439;243440;243441;243442;243443;243444	326669;326670;326671	326669			2	
NSLESYAFNMK	1	Unmodified	1302.5914	0.59143734	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	6.49	4	5	4				3	4	3	5	7	6	5	63.623	58.762	2	1.2011E-20	51584	160511_QHF_FH_JSI9i_2	169.41	153.52			1.1977	1.1303	41.066	23	5	Median	1.3016	1.1061	23.499	5	0	Median	1.2408	1.4365	68.187	7	3	Median	1.1252	1.0973	26.403	6	1	Median	1.1441	1.227	27.14	5	1	Median	31667000000	15044000000	16623000000	5256500000	2076600000	3179900000	9531100000	5568700000	3962400000	10211000000	4091500000	6119800000	6668400000	3307300000	3361000000	39711	985	37364	243445;243446;243447;243448;243449;243450;243451;243452;243453;243454;243455;243456;243457;243458;243459;243460;243461;243462;243463;243464;243465;243466;243467	326672;326673;326674;326675;326676;326677;326678;326679;326680;326681;326682;326683;326684;326685;326686;326687;326688;326689;326690;326691;326692;326693;326694;326695;326696;326697;326698;326699;326700;326701;326702;326703;326704;326705;326706;326707;326708;326709;326710;326711;326712;326713;326714;326715;326716;326717;326718;326719;326720	326702			49	
NSLESYAFNMK	1	Oxidation (M)	1318.5864	0.58635197	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.32	4	4	1			2	2	2	1	5	3	4	4	50.116	45.185	2	1.0697E-07	38409	160511_QHF_FH_JSI12i_2	125.7	118.57			1.0379	1.0173	18.349	16	2	Median	1.1463	0.95327	16.063	5	0	Median	0.77263	0.91972	39.73	3	1	Plateau	0.89506	0.89516	7.2895	4	0	Linear	1.0241	1.106	1.9801	4	1	Median	2971200000	1495400000	1475700000	605950000	281770000	324180000	660730000	351740000	308990000	842410000	433160000	409250000	862080000	428780000	433300000	39712	985	37364	243468;243469;243470;243471;243472;243473;243474;243475;243476;243477;243478;243479;243480;243481;243482;243483	326721;326722;326723;326724;326725;326726;326727;326728;326729;326730;326731;326732;326733;326734;326735;326736;326737;326738;326739;326740;326741;326742;326743;326744;326745;326746;326747;326748;326749;326750;326751	326723		566	31	
NSLFGSVETWPWQVLSK	1	Unmodified	1976.9996	0.99961265	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	102.08	101.97	2	6.5892E-81	90567	160511_QHF_FH_JSI10i_2	246.96	223.28			0.99619	1.1132	8.2762	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81605	1.012	NaN	1	0	Median	1.1867	1.1934	NaN	1	0	Median	0.99619	1.1132	NaN	1	0	Median	356050000	175430000	180630000	0	0	0	87409000	48101000	39309000	122410000	58731000	63678000	146230000	68594000	77641000	39713	4965	37365	243484;243485;243486	326752;326753;326754;326755	326755			4	
NSLGGDVLFVGK	1	Unmodified	1204.6452	0.64518747	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	66.905	64.154	2	8.2329E-05	56914	160511_QHF_FH_JSI10i_2	93.058	72.156			0.98405	0.95575	19.978	10	0	Median	1.0489	0.88553	4.6916	2	0	Median	0.73627	0.8842	1.8571	2	0	Median	1.0335	1.0505	33.642	3	0	Median	0.95339	1.0785	5.4423	3	0	Median	548730000	284480000	264240000	123400000	64297000	59099000	138360000	77084000	61281000	154920000	77219000	77700000	132050000	65884000	66165000	39714	4628	37366	243487;243488;243489;243490;243491;243492;243493;243494;243495;243496;243497	326756;326757;326758;326759;326760;326761;326762;326763;326764;326765;326766;326767;326768;326769;326770;326771;326772;326773;326774	326774			19	
NSLGGFASTQDTTVALK	1	Unmodified	1708.8632	0.86317875	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								3	2	3	3	60.672	59.856	2	2.4284E-52	53307	160511_QHF_FH_JSI9i_1	220.97	197.74			0.8115	0.82938	23.067	11	7	Median	0.66258	0.54154	24.524	3	2	Plateau	0.73723	0.87995	15.129	2	0	Median	0.90374	0.73737	20.411	3	3	Plateau	0.87081	0.89988	10.054	3	2	Median	956620000	530290000	426340000	172880000	107680000	65199000	217350000	132400000	84952000	341540000	164130000	177410000	224850000	126070000	98778000	39715	3173	37367	243498;243499;243500;243501;243502;243503;243504;243505;243506;243507;243508	326775;326776;326777;326778;326779;326780;326781;326782;326783;326784;326785;326786;326787;326788;326789	326784			15	
NSLIGMWALSPTVFALLSK	1	Unmodified	2047.1176	0.1176193	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.53	91.112	3	8.5823E-08	52325	160513_QHF_FH_JSI11Kac_6	97.488	81.514			0.8738	0.85671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8738	0.85671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44407000	21088000	23320000	0	0	0	0	0	0	44407000	21088000	23320000	0	0	0	39716	4205	37368	243509	326790	326790			1	
NSLLAGGDDDTMSVISGISSR	0	Unmodified	2093.9899	0.98991218	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								2	2	2	2	84.252	83.79	2;3	5.9779E-28	76295	160511_QHF_FH_JSI11i_1	169.61	149.02			0.9343	0.91455	10.347	4	3	Median	0.95807	0.78046	NaN	1	1	Median	0.7843	0.89403	NaN	1	1	Median	1.0456	0.99607	NaN	1	0	Median	0.91112	0.93554	NaN	1	1	Median	102140000	52840000	49295000	21271000	6992900	14278000	26370000	16002000	10368000	30313000	15805000	14508000	24182000	14040000	10142000	39717	3521	37369	243510;243511;243512;243513;243514;243515;243516;243517	326791;326792;326793;326794;326795;326796;326797;326798;326799	326791			9	
NSLLASYIHYVFR	0	Unmodified	1581.8304	0.83036248	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	4	4	3	3	89.227	81.09	2;3	8.5101E-20	46655	160513_QHF_FH_JSI10Kac_6	188.96	174.8			0.66444	0.61482	136.11	14	14	Median	0.58599	0.51045	110.17	4	4	Median	0.82193	0.95494	177.31	4	4	Median	0.34966	0.34116	185.61	3	3	Median	0.58909	0.62768	128.15	3	3	Plateau	3730000000	2175400000	1554600000	813960000	507380000	306580000	1881600000	1114600000	767040000	662350000	328540000	333800000	372070000	224880000	147190000	39718	4181	37370	243518;243519;243520;243521;243522;243523;243524;243525;243526;243527;243528;243529;243530;243531	326800;326801;326802;326803;326804;326805;326806;326807;326808;326809;326810;326811;326812;326813	326813			14	
NSLLDDLHSAILK	1	Unmodified	1437.7827	0.78274359	4583	Q9C0D3	ZYG11B	Protein zyg-11 homolog B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.572	88.015	3	0.050278	77501	160511_QHF_FH_JSI11i_2	26.541	20.935			0.6143	0.60537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6143	0.60537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3194300	1882900	1311300	0	0	0	0	0	0	3194300	1882900	1311300	0	0	0	39719	4583	37371	243532	326814	326814			1	
NSLLIAPMPTASTAQILGNNESIEPYTSNIYTR	0	Oxidation (M)	3594.7876	0.78757755	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			100.47	100.46	3	2.9706E-17	91148	160511_QHF_FH_JSI10i_1	84.962	80.248			1.0972	1.2827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0972	1.2827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16798000	8378900	8419100	0	0	0	16798000	8378900	8419100	0	0	0	0	0	0	39720	1242	37372	243533	326815;326816	326815		876	2	
NSLLNMICQQVEAIK	1	Oxidation (M)	1775.891	0.89099018	191	O14715;Q99666	RGPD8;RGPD5	RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	yes	no	0	0	1	0		By MS/MS		By MS/MS	2	0		2									1		1	59.136	58.031	2	0.0092922	49850	160511_QHF_FH_JSI12i_2	51.927	17.966			0.77797	0.92779	23.946	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63098	0.78327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9592	1.099	NaN	1	0	Median	479420000	247000000	232420000	0	0	0	177550000	100980000	76563000	0	0	0	301870000	146010000	155860000	39721	191	37373	243534;243535	326817;326818	326818		79	2	
NSLLSLSDT	0	Unmodified	948.47639	0.47639081	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	62.708	62.043	1;2	0.0026956	56378	160511_QHF_FH_JSI11i_1	63.565	51.66			0.88872	0.92923	5.81	6	0	Median	1.1824	0.98128	0.4459	2	0	Median	0.76487	0.89979	4.0551	2	0	Median	0.94427	0.93251	NaN	1	0	Median	0.83644	0.85249	NaN	1	0	Median	520730000	257670000	263070000	181740000	78503000	103240000	164340000	89306000	75034000	92770000	47668000	45102000	81876000	42188000	39687000	39722	3222	37374	243536;243537;243538;243539;243540;243541	326819;326820;326821;326822;326823;326824;326825;326826	326820			7	
NSLPDTVQIR	0	Unmodified	1141.6091	0.60913632	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.79	4	4				1	3			2	3	3	4	45.638	41.698	2	6.516E-10	37605	160511_QHF_FH_JSI11i_1	138.4	108.23			1.0958	1.1346	14.286	12	1	Median	1.3933	1.1731	1.3249	2	0	Median	0.95066	1.1077	22.639	3	0	Median	1.3358	1.2871	16.873	3	1	Plateau	0.9883	1.0663	11.368	4	0	Median	3371900000	1452400000	1919400000	558640000	198680000	359960000	972480000	441580000	530900000	1083100000	412760000	670380000	757630000	399420000	358210000	39723	1881	37375	243542;243543;243544;243545;243546;243547;243548;243549;243550;243551;243552;243553	326827;326828;326829;326830;326831;326832;326833;326834;326835;326836;326837;326838;326839;326840;326841;326842;326843;326844;326845	326828			19	
NSLPELSR	0	Unmodified	914.48214	0.48214489	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	4.5	5.5	4	2					2			1	3	3	1	32.961	30.047	2	0.0074127	26354	160511_QHF_FH_JSI9i_1	59.597	42.821			0.86825	0.87486	14.298	8	0	Median	1.1044	0.90636	NaN	1	0	Median	0.65721	0.77523	21.064	3	0	Plateau	0.80253	0.80065	16.117	3	0	Plateau	0.8852	0.92096	NaN	1	0	Median	1146200000	647430000	498790000	107400000	55791000	51608000	363780000	213620000	150170000	525380000	294810000	230570000	149650000	83212000	66439000	39724	5296	37376	243554;243555;243556;243557;243558;243559;243560;243561	326846;326847;326848;326849	326848			4	
NSLQNLSQYPMMR	0	Unmodified	1580.7439	0.74393201	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		61.658	61.146	2	0.00045835	53193	160511_QHF_FH_JSI11i_2	99.5	82.133			0.65056	0.63373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65056	0.63373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17711000	4425400	13286000	0	0	0	0	0	0	17711000	4425400	13286000	0	0	0	39725	1305	37377	243562;243563	326850;326851	326850			2	
NSLTLEAVK	1	Unmodified	973.54441	0.5444108	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.113	37.786	2	0.04112	33881	160511_QHF_FH_JSI10i_1	46.001	22.233			1.7357	1.8619	11.179	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7015	2.015	NaN	1	1	Median	1.7706	1.7204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	185550000	81739000	103810000	0	0	0	95674000	39691000	55983000	89871000	42048000	47823000	0	0	0	39726	4080	37378	243564;243565	326852;326853	326853			2	
NSLTSKDPDIK	2	Acetyl (K)	1258.6405	0.64049603	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		44.455	35.197	2	0.034769	19824	160513_QHF_FH_JSI11Kac_3	51.927	30.463			0.050655	0.047966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.050655	0.047966	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2411300	2345300	66031	0	0	0	0	0	0	2411300	2345300	66031	0	0	0	39727	2585	37379	243566	326854	326854			1	
NSLVDKPFAAK	2	Acetyl (K)	1230.6608	0.66083754	2513	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		64.89	53.826	2	0.0016173	30155	160513_QHF_FH_JSI11Kac_4	82.008	61.867			0.066789	0.065917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.066789	0.065917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7888900	7256700	632160	0	0	0	0	0	0	7888900	7256700	632160	0	0	0	39728	2513	37380	243567	326855	326855	2507		1	
NSLVDKPFAAK	2	Unmodified	1188.6503	0.65027285	2513	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	2	2	1	33.164	32.525	2;3	0.008981	27448	160511_QHF_FH_JSI11i_2	48.004	32.114			0.97036	1.0647	84.144	6	6	Median	2.5092	2.1804	NaN	1	1	Median	0.87628	1.0647	84.11	2	2	Median	0.97251	0.98161	138.38	2	2	Median	0.58598	0.56947	NaN	1	1	Median	382950000	186330000	196620000	56618000	20502000	36116000	143090000	74543000	68546000	139210000	64006000	75206000	44033000	27278000	16755000	39729	2513	37380	243568;243569;243570;243571;243572;243573;243574	326856;326857;326858;326859;326860;326861;326862	326858			7	
NSLVGPAWQTGLHHLAGPVYIFAITHSLEQPWTTPR	0	Unmodified	3994.0642	0.064225603	3080	Q6NXR4	TTI2	TELO2-interacting protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	95.586	88.005	4;5	1.6949E-53	51429	160513_QHF_FH_JSI10Kac_6	159.53	151.12			1.1243	1.2587	1.4254	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0714	1.2715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1798	1.2461	NaN	1	0	Median	600290000	283110000	317180000	0	0	0	334830000	147180000	187650000	0	0	0	265460000	135930000	129540000	39730	3080	37381	243575;243576	326863;326864;326865	326865			3	
NSLVSENEMMNEK	1	Unmodified	1523.6596	0.65959326	5341	Q9UJC3	HOOK1	Protein Hook homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.006	40.386	2	4.6709E-07	36669	160511_QHF_FH_JSI12i_1	95.018	61.794			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39731	5341	37382	243577	326866	326866			1	
NSLVSPAQEPAPLQTAMEPQTTVVHNATDGIK	1	Unmodified	3343.6718	0.67181951	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	79.207	78.632	3	3.5857E-17	71308	160511_QHF_FH_JSI10i_1	85.412	78.837			0.78997	0.8451	15.931	7	4	Median	1.0223	0.90122	NaN	1	0	Median	0.74625	0.8451	NaN	1	0	Median	0.67454	0.73861	9.1031	3	3	Plateau	0.926	0.99289	3.7654	2	1	Median	180420000	103540000	76888000	15489000	7722200	7767200	40901000	28101000	12799000	75680000	47820000	27860000	48353000	19891000	28462000	39732	2439	37383	243578;243579;243580;243581;243582;243583;243584;243585	326867;326868;326869;326870;326871;326872;326873;326874;326875;326876;326877;326878;326879;326880;326881	326873			15	
NSLYDMAR	0	Unmodified	968.43857	0.43856552	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0				By MS/MS	2	0		1											1	34.205	32.876	2	0.044125	27892	160511_QHF_FH_JSI12i_2	47.198	35.293			0.82233	0.92178	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82233	0.92178	NaN	1	1	Median	71854000	41762000	30093000	0	0	0	0	0	0	0	0	0	71854000	41762000	30093000	39733	4498;4343	37384	243586	326882	326882			1	
NSMFHNR	0	Unmodified	904.39737	0.3973694	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	7.3001	7.0049	2	0.0065547	5017	160511_QHF_FH_JSI9i_2	90.706	72.939			0.94353	0.97097	22.809	7	0	Median	1.3583	1.155	24.539	2	0	Median	0.89639	1.0876	7.7399	2	0	Median	0.94857	0.90699	2.9655	2	0	Median	0.64168	0.65902	NaN	1	0	Median	615620000	328140000	287480000	142240000	65485000	76759000	169320000	95385000	73933000	167370000	83229000	84145000	136680000	84036000	52647000	39734	4325	37385	243587;243588;243589;243590;243591;243592;243593;243594	326883;326884;326885;326886;326887;326888;326889;326890;326891;326892	326886			10	
NSMLMMNLLAFVSAVLMGFSK	1	Unmodified	2303.155	0.15500914	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			107.38	101.66	3	0.0021329	60221	160513_QHF_FH_JSI10Kac_6	64.152	56.198			0.49549	0.60118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49549	0.60118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21038000	15147000	5891000	0	0	0	21038000	15147000	5891000	0	0	0	0	0	0	39735	986	37386	243595;243596	326893;326894	326893			2	
NSMPASSFQQQK	1	Unmodified	1351.619	0.61904908	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	3	2	1	24.697	22.652	2	4.77E-23	19620	160511_QHF_FH_JSI11i_1	179.1	171.06			0.96182	0.9568	25.642	6	1	Median	1.3683	1.1521	43.941	2	1	Median	0.83127	0.97808	NaN	1	0	Median	0.85118	0.83191	16.67	2	0	Median	0.97517	1.0258	NaN	1	0	Median	1325800000	728610000	597200000	320500000	156250000	164250000	254660000	123830000	130820000	304460000	189020000	115430000	446200000	259510000	186690000	39736	4910;5562	37387	243597;243598;243599;243600;243601;243602;243603;243604	326895;326896;326897;326898;326899;326900;326901;326902;326903;326904;326905;326906;326907;326908	326896			13	
NSMPASSFQQQK	1	Oxidation (M)	1367.614	0.6139637	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				3	2	3	3	19.872	17.925	2	3.4928E-16	20021	160511_QHF_FH_JSI12i_1	166.34	151.19			1.0384	1.0325	59.265	10	4	Median	1.0391	0.86423	73.899	3	2	Median	0.84533	1.0008	33.628	2	1	Median	1.0673	1.0303	10.628	2	0	Median	1.0377	1.1231	85.434	3	1	Median	615950000	259860000	356090000	122990000	47138000	75851000	160360000	87861000	72504000	79219000	44792000	34427000	253380000	80066000	173310000	39737	4910;5562	37387	243605;243606;243607;243608;243609;243610;243611;243612;243613;243614;243615	326909;326910;326911;326912;326913;326914;326915;326916;326917;326918;326919;326920;326921	326912		2551	13	
NSMPASSFQQQKLR	1	Acetyl (K)	1662.8148	0.81478877	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		54.808	44.089	2	0.00038769	25529	160513_QHF_FH_JSI11Kac_4	89.548	72.522			0.55498	0.60119	69.681	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84305	0.984	NaN	1	0	Median	0.36535	0.36731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6317000	3737100	2579900	0	0	0	2095700	916270	1179500	4221200	2820800	1400400	0	0	0	39738	4910;5562	37388	243616;243617	326922;326923;326924;326925	326924	3263		4	
NSMPASSFQQQKLR	1	Acetyl (K);Oxidation (M)	1678.8097	0.80970339	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	1	0	1	1			By MS/MS		14	0							1					1		44.956	34.663	2	0.050052	20746	160513_QHF_FH_JSI11Kac_4	48.004	28.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1362700	1362700	0	0	0	0	0	0	0	1362700	1362700	0	0	0	0	39739	4910;5562	37388	243618	326926	326926	3263	2551	1	
NSMSETVR	0	Unmodified	922.41783	0.41783007	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	2	2	3	9.1296	8.7134	2	0.0016363	6556	160511_QHF_FH_JSI9i_2	86.833	68.102			1.0767	1.0751	15.196	8	3	Median	1.2005	0.99947	9.7884	2	1	Median	0.86555	1.0365	17.22	2	0	Median	1.2259	1.2181	17.737	2	1	Median	1.112	1.2097	16.592	2	1	Median	1864600000	904980000	959620000	347250000	158360000	188890000	542660000	286840000	255820000	518140000	231770000	286380000	456550000	228020000	228540000	39740	1648	37389	243619;243620;243621;243622;243623;243624;243625;243626;243627;243628	326927;326928;326929;326930;326931;326932;326933;326934;326935;326936;326937;326938;326939	326934			13	
NSNGQELEK	1	Unmodified	1017.4727	0.47270242	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.788	6.4522	2	0.00058064	4368	160511_QHF_FH_JSI12i_1	88.37	71.13			0.43016	0.47801	24.828	4	4	Median	0.80853	0.65836	NaN	1	1	Median	0.41848	0.48696	NaN	1	1	Median	0.37527	0.35896	NaN	1	1	Median	0.44216	0.46922	NaN	1	1	Median	1259700000	974220000	285500000	282210000	204730000	77473000	336300000	266190000	70105000	311120000	240860000	70256000	330110000	262440000	67667000	39741	3290	37390	243629;243630;243631;243632	326940;326941;326942;326943	326941			4	
NSNILEDLETLR	0	Unmodified	1415.7256	0.72562264	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	90.569	90.004	2	6.959E-11	79953	160511_QHF_FH_JSI10i_2	148.28	109.98			0.89867	1.0414	2.9859	3	0	Median	1.2663	1.0776	NaN	1	0	Median	0.83764	1.0414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89867	1.0153	NaN	1	0	Median	569150000	261000000	308160000	197350000	57932000	139420000	218230000	126180000	92050000	0	0	0	153570000	76884000	76683000	39742	1620	37391	243633;243634;243635	326944;326945;326946;326947	326947			4	
NSNKPYR	1	Acetyl (K)	919.45118	0.45117911	5401	Q9ULK2	ATXN7L1	Ataxin-7-like protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	11.512	3.9244	2	0.038831	4507	160513_QHF_FH_JSI12Kac_4	64.757	47.793			1.188	1.2216	10.413	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1619	1.1349	NaN	1	0	Median	1.2147	1.315	NaN	1	0	Median	18424000	7685900	10738000	0	0	0	0	0	0	11605000	4553100	7051500	6819700	3132800	3686900	39743	5401	37392	243636;243637	326948;326949	326949			2	
NSNLVGAAHEELQQSR	0	Unmodified	1751.8551	0.85507368	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	6.02	4	20	12					6	8	13	8	18	11	41.096	37.597	2;3	4.7672E-26	32900	160511_QHF_FH_JSI9i_2	242.91	225.04			2.2185	2.1673	180.85	35	35	Median	3.8868	3.2663	187.65	8	8	Median	1.5132	1.8399	234.2	4	4	Median	2.0673	2.0293	158.39	14	14	Median	3.21	3.5682	216.12	9	9	Median	13018000000	5947000000	7070600000	2431200000	1229800000	1201300000	2337600000	893880000	1443700000	3798000000	1452700000	2345300000	4450800000	2370600000	2080200000	39744	791	37393	243638;243639;243640;243641;243642;243643;243644;243645;243646;243647;243648;243649;243650;243651;243652;243653;243654;243655;243656;243657;243658;243659;243660;243661;243662;243663;243664;243665;243666;243667;243668;243669;243670;243671;243672;243673;243674;243675;243676;243677;243678;243679;243680;243681;243682;243683;243684;243685;243686;243687	326950;326951;326952;326953;326954;326955;326956;326957;326958;326959;326960;326961;326962;326963;326964;326965;326966;326967;326968;326969;326970;326971;326972;326973;326974;326975;326976;326977;326978;326979;326980;326981;326982;326983;326984;326985;326986;326987;326988;326989;326990;326991;326992;326993;326994;326995;326996;326997;326998;326999;327000;327001;327002;327003;327004;327005;327006;327007	326976			58	
NSNMGFWDDAVK	1	Unmodified	1382.5925	0.59249998	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	61.665	60.694	2	9.4056E-05	52577	160511_QHF_FH_JSI11i_2	90.913	80.605			0.75775	0.83496	38.94	3	2	Median	0.63208	0.52221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1343	1.1311	NaN	1	0	Median	0.75775	0.83496	NaN	1	1	Median	86104000	53464000	32640000	27189000	21138000	6050700	0	0	0	31465000	16120000	15345000	27450000	16206000	11245000	39745	3172	37394	243688;243689;243690	327008;327009;327010;327011;327012;327013	327011			6	
NSNPALNDNLEK	1	Unmodified	1327.6368	0.63680763	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.31	5	4	1		3	3				2	6	4	4	30.937	26.491	2;3	8.8812E-42	23035	160511_QHF_FH_JSI11i_1	205.13	189.98			0.8392	0.94965	15.789	13	3	Median	1.2313	1.0259	10.929	2	1	Median	0.78278	0.94144	14.179	5	2	Median	0.98248	0.94417	16.155	3	0	Median	1.0146	1.0709	22.788	3	0	Median	8467100000	4404600000	4062400000	2091400000	1159300000	932070000	2399000000	1142100000	1257000000	1834400000	963600000	870760000	2142300000	1139600000	1002700000	39746	119	37395	243691;243692;243693;243694;243695;243696;243697;243698;243699;243700;243701;243702;243703;243704;243705;243706	327014;327015;327016;327017;327018;327019;327020;327021;327022;327023;327024;327025;327026;327027;327028;327029;327030;327031;327032;327033;327034;327035;327036;327037	327014			24	
NSNPALNDNLEKGLLK	2	Acetyl (K)	1780.9319	0.93192702	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.7	0.471						1	2				1		2	76.512	66.678	2	6.1934E-16	35282	160513_QHF_FH_JSI12Kac_4	138.42	122.28			0.86288	0.94591	22.491	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95237	1.1283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76349	0.82636	19.109	2	0	Median	12466000	6998400	5467500	0	0	0	4078600	1897500	2181100	0	0	0	8387400	5101000	3286400	39747	119	37396	243707;243708;243709	327038;327039;327040;327041;327042	327042	77;78		5	
NSNPDEIEIDFETLKPSTLR	1	Unmodified	2317.1438	0.14377029	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	85.577	84.55	3	0.00494	75088	160511_QHF_FH_JSI10i_2	43.116	21.105			1.2802	1.4199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2802	1.4199	NaN	1	1	Median	27631000	15449000	12182000	0	0	0	0	0	0	0	0	0	27631000	15449000	12182000	39748	457	37397	243710;243711	327043;327044	327044			2	
NSNVDSSYLESLYQSCPR	0	Unmodified	2117.9324	0.9323973	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	69.376	68.945	2	1.2487E-06	62425	160511_QHF_FH_JSI10i_1	139.58	125.92			1.2744	1.3748	3.1455	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1785	1.3446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3782	1.4057	NaN	1	1	Median	53796000	21380000	32416000	0	0	0	21659000	10003000	11656000	0	0	0	32137000	11377000	20760000	39749	3250	37398	243712;243713	327045;327046	327046			2	
NSNVETLK	1	Unmodified	903.46616	0.46616048	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		17.374	9.9778	2	0.041361	7466	160513_QHF_FH_JSI11Kac_3	55.531	31.558			2.0162	1.9348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0162	1.9348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3239800	1213200	2026500	0	0	0	0	0	0	3239800	1213200	2026500	0	0	0	39750	3896	37399	243714	327047	327047			1	
NSNYFSMDSMEGK	1	Unmodified	1508.5912	0.59117935	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.952	53.289	2	6.3319E-05	48203	160511_QHF_FH_JSI11i_1	106.01	105.43			1.049	0.8924	21.683	4	0	Linear	0.8174	0.66492	NaN	1	0	Median	0.67657	0.7893	NaN	1	0	Median	1.0911	1.0559	NaN	1	0	Median	0.96475	1.009	NaN	1	0	Median	263010000	136370000	126640000	55607000	26123000	29484000	47971000	28284000	19687000	80554000	39043000	41511000	78879000	42920000	35959000	39751	2494	37400	243715;243716;243717;243718	327048;327049;327050;327051;327052;327053;327054;327055	327049			8	
NSPDWGGVVILHR	0	Unmodified	1448.7524	0.75244651	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				69.55	60.89	3	0.0015276	32330	160513_QHF_FH_JSI9Kac_6	63.364	49.701			0.83355	0.71993	NaN	1	1	Median	0.83355	0.71993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34321000	20569000	13752000	34321000	20569000	13752000	0	0	0	0	0	0	0	0	0	39752	4417	37401	243719	327056	327056			1	
NSPGSQVASNPR	0	Unmodified	1212.5847	0.58471248	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	10.758	7.4079	2	2.0981E-06	6765	160511_QHF_FH_JSI10i_1	125.75	113.9			0.98021	1.0157	5.0116	7	1	Median	1.2466	1.0394	NaN	1	0	Median	0.81861	0.96643	NaN	1	0	Median	0.97195	0.93769	6.7415	3	1	Plateau	0.98191	1.0385	3.1265	2	0	Median	626280000	324210000	302070000	143780000	73746000	70031000	144730000	78621000	66108000	165590000	96997000	68597000	172180000	74842000	97336000	39753	4628	37402	243720;243721;243722;243723;243724;243725;243726	327057;327058;327059;327060;327061;327062;327063;327064;327065;327066;327067	327062			11	
NSPGVPTGAK	1	Unmodified	926.48214	0.48214489	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.626	12.366	2	0.0071477	10389	160511_QHF_FH_JSI12i_1	61.48	27.667			0.20488	0.24339	35.189	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.20488	0.24339	NaN	1	0	Median	0.22888	0.21858	NaN	1	0	Median	0.40455	0.42126	NaN	1	1	Median	500880000	398090000	102790000	0	0	0	178640000	154070000	24565000	155460000	127110000	28342000	166790000	116910000	49885000	39754	2270	37403	243727;243728;243729	327068;327069	327069			1	
NSPLNKAEVHESYK	2	Acetyl (K)	1656.8107	0.81074925	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	46.595	36.381	3	0.0011614	20472	160513_QHF_FH_JSI11Kac_5	60.209	55.579			0.66235	0.69635	24.25	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.73779	0.89126	NaN	1	0	Median	0.65008	0.63734	NaN	1	0	Median	0.9677	1.0618	5.2412	2	0	Median	27060000	14328000	12733000	0	0	0	7286600	3928500	3358100	10402000	5905000	4497300	9371500	4494100	4877300	39755	2624	37404	243730;243731;243732;243733	327070;327071;327072	327070	2586;2591		3	
NSPLVSR	0	Unmodified	771.4239	0.42390173	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.17	3	5	1				2	3		2	4	4	4	13.928	10.142	2	0.0063524	9114	160511_QHF_FH_JSI12i_2	79.469	52.152			0.91114	0.99294	25.845	13	1	Median	1.2441	1.0287	4.9988	2	0	Median	0.79947	0.95221	20.349	4	0	Median	0.90153	0.88842	25.69	4	0	Median	0.91114	0.99684	46.993	3	1	Median	6418300000	3421900000	2996400000	839790000	403910000	435880000	1688600000	983390000	705190000	2222500000	1134300000	1088100000	1667500000	900320000	767170000	39756	1504	37405	243734;243735;243736;243737;243738;243739;243740;243741;243742;243743;243744;243745;243746;243747	327073;327074;327075;327076;327077;327078;327079;327080;327081;327082;327083;327084;327085;327086	327074			14	
NSPNNISGISNPPGTPR	0	Unmodified	1720.8493	0.84926002	4506	Q9BWW4	SSBP3	Single-stranded DNA-binding protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	38.154	37.871	2	0.00034669	34076	160511_QHF_FH_JSI11i_1	79.875	70.871			0.86494	0.83586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86494	0.83586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29103000	16214000	12889000	0	0	0	0	0	0	29103000	16214000	12889000	0	0	0	39757	4506	37406	243748;243749;243750	327087;327088;327089	327087			3	
NSPQEEVELK	1	Unmodified	1171.5721	0.57208211	4326	Q99933	BAG1	BAG family molecular chaperone regulator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	26.962	26.592	2	0.00023931	23346	160511_QHF_FH_JSI11i_1	80.688	57.26			1.0915	1.0701	21.153	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98302	0.92147	NaN	1	0	Median	1.212	1.2428	NaN	1	1	Median	164380000	82561000	81820000	0	0	0	0	0	0	67087000	29738000	37349000	97294000	52823000	44471000	39758	4326	37407	243751;243752;243753	327090;327091;327092;327093;327094	327090			5	
NSPVEAVFSYLTGK	1	Unmodified	1510.7668	0.76675917	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	102	101.92	2	2.1111E-10	87819	160511_QHF_FH_JSI12i_2	113.65	95.381			1.3027	1.422	14.255	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2846	1.5728	NaN	1	1	Median	1.321	1.2856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	277080000	120510000	156570000	0	0	0	129150000	59721000	69433000	147930000	60790000	87140000	0	0	0	39759	1790	37408	243754;243755;243756	327095;327096;327097	327095			3	
NSPVGVNHR	0	Unmodified	978.49953	0.49952629	4291	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		6.3968	6.3968	2	0.055149	4185	160511_QHF_FH_JSI11i_3	43.218	31.313			1.365	1.2325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.365	1.2325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52262000	22518000	29744000	0	0	0	0	0	0	52262000	22518000	29744000	0	0	0	39760	4291	37409	243757	327098	327098			1	
NSPVNTK	1	Unmodified	758.39227	0.39226725	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.6923	5.3462	2	0.033279	3301	160511_QHF_FH_JSI12i_1	50.703	1.9477			0.93598	1.0007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93598	1.0007	NaN	1	0	Median	357580000	196770000	160810000	0	0	0	0	0	0	0	0	0	357580000	196770000	160810000	39761	4338	37410	243758	327099	327099			1	
NSQDDYDEERK	1	Unmodified	1397.5695	0.56951593	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	6.2654	6.0398	2	0.00025636	4117	160511_QHF_FH_JSI12i_1	79.974	75.361			0.66569	0.69992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66569	0.69992	NaN	1	0	Median	54953000	14418000	40535000	0	0	0	0	0	0	24987000	0	24987000	29965000	14418000	15547000	39762	602	37411	243759;243760	327100;327101	327101			2	
NSQFAGGPLGNPNTTAK	1	Unmodified	1672.8169	0.81689726	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.41	4	5					3			2	3	4	3	40.606	38.1	2	2.1233E-15	34894	160511_QHF_FH_JSI12i_1	157.09	135.53			0.9431	1.0053	11.624	11	2	Median	1.1477	0.9647	20.456	2	0	Median	0.79566	0.95254	10.653	2	0	Median	1.0173	1.0013	13.062	4	2	Median	1.0295	1.0786	10.737	3	0	Plateau	1090100000	559230000	530830000	210280000	108460000	101820000	280390000	161050000	119330000	342230000	164800000	177440000	257160000	124920000	132240000	39763	558	37412	243761;243762;243763;243764;243765;243766;243767;243768;243769;243770;243771;243772	327102;327103;327104;327105;327106;327107;327108;327109;327110;327111;327112;327113;327114;327115;327116;327117;327118;327119;327120;327121;327122;327123;327124;327125	327110			23	
NSQGEEVAQR	0	Unmodified	1116.516	0.51596421	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	3	2	6.5422	2.365	2	7.3174E-18	2622	160513_QHF_FH_JSI11Kac_3	172.23	150.1			1.0675	1.0911	12.116	9	0	Median	1.444	1.1774	NaN	1	0	Median	0.84641	0.98697	4.716	3	0	Median	1.1236	1.0911	13.765	3	0	Plateau	1.0206	1.1086	3.3372	2	0	Median	3572800000	1815200000	1757700000	855660000	384730000	470920000	960020000	544800000	415220000	886530000	445080000	441450000	870620000	440540000	430080000	39764	1180	37413	243773;243774;243775;243776;243777;243778;243779;243780;243781	327126;327127;327128;327129;327130;327131;327132;327133;327134;327135;327136;327137;327138;327139	327131			14	
NSQGSEMFGDDDK	1	Unmodified	1428.5463	0.54633764	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.169	22.63	2	9.4334E-11	19384	160511_QHF_FH_JSI9i_1	152.55	150.51			1.0391	1.1028	17.782	4	0	Median	1.0082	0.80843	NaN	1	0	Median	0.98396	1.168	NaN	1	0	Median	1.0708	1.0412	NaN	1	0	Median	1.1356	1.189	NaN	1	0	Median	816510000	386660000	429850000	255110000	123970000	131140000	174320000	82088000	92228000	145690000	61463000	84226000	241400000	119140000	122250000	39765	1085	37414	243782;243783;243784;243785	327140;327141;327142;327143;327144;327145;327146;327147	327147			8	
NSQGSEMFGDDDK	1	Oxidation (M)	1444.5413	0.54125227	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	23.319	22.643	2	0.00036915	19589	160511_QHF_FH_JSI11i_1	77.597	75.084			1.0524	1.0889	36.148	5	1	Median	1.5503	1.2679	66.082	2	1	Median	0.76193	0.90232	NaN	1	0	Median	1.2698	1.2367	NaN	1	0	Median	1.0524	1.0889	NaN	1	0	Median	232180000	105050000	127140000	76246000	29925000	46321000	61794000	32581000	29213000	52754000	23974000	28780000	41390000	18569000	22821000	39766	1085	37414	243786;243787;243788;243789;243790	327148;327149;327150	327148		733	3	
NSQLEQENNLLK	1	Unmodified	1428.7209	0.72087161	2699	Q15714	TSC22D1	TSC22 domain family protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	3	1	2	43.383	39.904	2	6.4689E-26	35822	160511_QHF_FH_JSI11i_1	232.41	197.23			1.5898	1.6394	54.08	6	4	Median	2.2729	1.8445	NaN	1	1	Median	1.7106	2.0272	46.692	2	1	Median	2.0486	2.0262	NaN	1	1	Median	0.757	0.81258	42.475	2	1	Median	1479900000	501080000	978840000	269680000	76980000	192700000	441150000	157090000	284060000	421980000	117630000	304350000	347110000	149380000	197720000	39767	2699	37415	243791;243792;243793;243794;243795;243796;243797	327151;327152;327153;327154;327155;327156;327157	327151			7	
NSQSFFSGLFGGSSK	1	Unmodified	1548.7209	0.72087161	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		2	6						2	3	2	3	2	84.15	82.328	2;3	1.5827E-14	72896	160511_QHF_FH_JSI12i_3	156.52	141.37			1.0426	1.0121	13.49	10	4	Median	1.2502	1.0462	18.312	3	3	Median	0.9961	1.1569	7.2911	2	0	Median	1.0523	0.96402	10.826	3	1	Median	0.93128	0.92335	3.2626	2	0	Median	899730000	460330000	439400000	137410000	62915000	74493000	82703000	35307000	47396000	405890000	210960000	194930000	273730000	151150000	122580000	39768	1838	37416	243798;243799;243800;243801;243802;243803;243804;243805;243806;243807	327158;327159;327160;327161;327162;327163;327164;327165;327166;327167;327168;327169	327168			12	
NSQSGNALTAYALFK	1	Unmodified	1583.7944	0.79437091	4183	Q96ND0	FAM210A	Protein FAM210A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.538	72.912	2	0.00017189	63904	160511_QHF_FH_JSI11i_2	91.914	68.688			0.72019	0.71653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72019	0.71653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31983000	17301000	14682000	0	0	0	0	0	0	31983000	17301000	14682000	0	0	0	39769	4183	37417	243808	327170;327171	327171			2	
NSRPEANEALER	0	Unmodified	1384.6695	0.66950474	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	11.954	11.579	2;3	1.1626E-06	9140	160511_QHF_FH_JSI11i_3	114.83	44.88			0.94161	0.9445	8.2188	11	0	Median	1.2141	1.0481	0.18557	2	0	Median	0.82831	0.9909	2.9469	2	0	Median	0.94776	0.93296	3.7439	4	0	Median	0.80996	0.83235	13.35	3	0	Plateau	897800000	464130000	433670000	145530000	68388000	77144000	215760000	111270000	104490000	405730000	212980000	192750000	130790000	71495000	59291000	39770	5711	37418	243809;243810;243811;243812;243813;243814;243815;243816;243817;243818;243819;243820	327172;327173;327174;327175;327176;327177;327178;327179;327180;327181;327182;327183	327174			12	
NSSAVEQDHAK	1	Unmodified	1184.5422	0.54217896	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.2		3					1				1	2	1	5.1237	2.9307	2	2.5875E-06	2528	160511_QHF_FH_JSI11i_2	121.9	90.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65940000	65940000	0	0	0	0	17428000	17428000	0	30826000	30826000	0	17686000	17686000	0	39771	5113	37419	243821;243822;243823;243824	327184;327185;327186;327187	327186			4	
NSSEASSGDFLDLK	1	Unmodified	1468.6682	0.66816734	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.845	55.184	2	0.012429	50185	160511_QHF_FH_JSI12i_1	55.899	41.48			1.1721	1.2303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1721	1.2303	NaN	1	1	Median	50558000	23534000	27024000	0	0	0	0	0	0	0	0	0	50558000	23534000	27024000	39772	5362	37420	243825	327188	327188			1	
NSSEQELR	0	Unmodified	961.44649	0.44648767	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.4343	6.0999	2	0.0035769	4135	160511_QHF_FH_JSI12i_1	71.501	52.77			1.0056	1.0085	5.5209	4	0	Median	1.2632	1.0658	NaN	1	0	Median	0.79652	0.93581	NaN	1	0	Median	0.99989	0.99131	NaN	1	0	Median	1.0114	1.026	NaN	1	0	Median	416410000	196880000	219530000	64583000	26743000	37840000	107950000	52112000	55840000	111690000	52326000	59362000	132190000	65697000	66488000	39773	5559	37421	243826;243827;243828;243829	327189;327190;327191;327192	327190			4	
NSSHAGAFVIVTEEAIAK	1	Unmodified	1842.9476	0.94757708	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	2	1	1	2	71.37	66.673	3	1.5223E-05	34933	160513_QHF_FH_JSI9Kac_6	71.073	59.794			0.98315	0.87422	36.843	6	2	Median	1.022	0.87422	7.9395	2	0	Median	0.55666	0.66503	NaN	1	1	Median	1.8271	1.8881	NaN	1	1	Median	0.83845	0.91813	24.251	2	0	Median	619070000	322480000	296590000	208050000	111730000	96325000	155900000	88310000	67587000	92751000	36431000	56320000	162370000	86013000	76361000	39774	1664	37422	243830;243831;243832;243833;243834;243835	327193;327194;327195;327196;327197;327198	327196			5	
NSSLAGAAFLLLCLLHK	1	Unmodified	1827.0077	0.0076749204	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.626	90.535	3	4.1146E-33	54158	160513_QHF_FH_JSI10Kac_6	167.28	157.72			0.75366	0.86373	23.705	3	1	Plateau	0.83785	0.70285	NaN	1	0	Median	0.75366	0.89922	NaN	1	0	Median	0.59584	0.55978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	698350000	372470000	325880000	205700000	115090000	90610000	320980000	175990000	144990000	171670000	81390000	90276000	0	0	0	39775	1304	37423	243836;243837;243838	327199;327200;327201;327202	327202			4	
NSSNFKK	2	Unmodified	823.41882	0.41881635	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		1.2455	1.2455	3	0.022751	590	160511_QHF_FH_JSI11i_3	37.558	26.489			0.10048	0.095603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10048	0.095603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56314000	47991000	8323900	0	0	0	0	0	0	56314000	47991000	8323900	0	0	0	39776	2438	37424	243839	327203	327203			1	
NSSNKPAVTTK	2	Unmodified	1145.6041	0.60405094	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.1	3	9	5					4		4	5	5	7	5.7163	3.4316	2;3	1.4488E-08	3268	160511_QHF_FH_JSI11i_3	131.17	95.631			0.88134	0.94151	35.336	18	2	Median	1.4561	1.2397	74.883	3	2	Plateau	0.86497	1.035	30.734	5	0	Median	1.1177	1.1004	18.941	5	0	Median	0.75462	0.77842	18.805	5	0	Median	7697300000	4285000000	3412300000	728370000	349470000	378900000	1175700000	686660000	489020000	2463500000	1119800000	1343700000	3329700000	2129100000	1200600000	39777	2586	37425	243840;243841;243842;243843;243844;243845;243846;243847;243848;243849;243850;243851;243852;243853;243854;243855;243856;243857;243858;243859;243860	327204;327205;327206;327207;327208;327209;327210;327211;327212;327213;327214;327215;327216;327217;327218;327219;327220;327221;327222;327223;327224;327225;327226;327227;327228	327205			25	
NSSPAPPQPAPGK	1	Unmodified	1246.6306	0.63060004	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			15.941	15.697	2	0.0065894	13219	160511_QHF_FH_JSI10i_1	51.276	40.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39778	5136	37426	243861	327229	327229			1	
NSSQDDLFPTSDTPR	0	Unmodified	1678.7435	0.74345755	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	46.604	46.094	2	2.2951E-07	41608	160511_QHF_FH_JSI11i_1	135.91	123.3			0.72134	0.7541	29.036	5	5	Median	NaN	NaN	NaN	0	0	Median	0.57238	0.66863	NaN	1	1	Median	0.81769	0.79475	44.561	2	2	Median	0.88272	0.91256	26.973	2	2	Median	237840000	131950000	105890000	0	0	0	47777000	27179000	20597000	112760000	60580000	52179000	77308000	44193000	33115000	39779	4753	37427	243862;243863;243864;243865;243866;243867	327230;327231;327232;327233;327234;327235	327231			6	
NSSQFFQSYVER	0	Unmodified	1490.679	0.6790068	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.313	55.366	2	4.4096E-06	47916	160511_QHF_FH_JSI11i_2	123.67	110.24			0.99629	1.1594	10.636	4	0	Linear	1.2388	1.0899	NaN	1	0	Median	0.92251	1.1306	NaN	1	0	Median	1.179	1.189	NaN	1	0	Median	1.2359	1.3877	NaN	1	0	Median	219280000	95716000	123560000	45965000	20421000	25545000	62119000	24649000	37470000	61498000	27904000	33594000	49696000	22742000	26954000	39780	2485	37428	243868;243869;243870;243871	327236;327237;327238;327239;327240;327241;327242;327243	327241			8	
NSSQSGGKPGSSPITK	2	Acetyl (K)	1572.7744	0.77436375	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	27.797	20.162	2	0.0019326	11910	160513_QHF_FH_JSI12Kac_3	70.622	56.202			0.83981	0.94839	10.062	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75877	0.90413	4.4501	2	0	Median	1.0996	1.1113	NaN	1	0	Median	0.90439	0.964	NaN	1	0	Median	31109000	16896000	14213000	0	0	0	12969000	8004000	4964800	6231900	2755300	3476600	11908000	6136600	5771400	39781	2694	37429	243872;243873;243874;243875	327244;327245;327246;327247	327245	2637		4	
NSSSSGTSLLTPK	1	Unmodified	1277.6463	0.64630969	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		27.974	27.769	2	9.475E-05	24655	160511_QHF_FH_JSI11i_1	95.094	81.82			3.2305	3.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2305	3.0764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39565000	10445000	29120000	0	0	0	0	0	0	39565000	10445000	29120000	0	0	0	39782	5113	37430	243876	327248	327248			1	
NSSTIIQNPVETPKK	2	Unmodified	1654.889	0.88899957	1475	P38432	COIL	Coilin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	36.744	35.399	3	0.019774	30082	160511_QHF_FH_JSI12i_2	37.438	26.804			1.0655	1.1857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0655	1.1857	NaN	1	1	Median	28555000	13072000	15483000	0	0	0	0	0	0	0	0	0	28555000	13072000	15483000	39783	1475	37431	243877	327249	327249			1	
NSSTYWEGK	1	Unmodified	1070.4669	0.46688876	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.52	3	7	1				3	1		4	3	5	3	23.599	20.386	2	8.2363E-05	16807	160511_QHF_FH_JSI11i_2	97.965	53.212			1.0804	1.1294	39.838	13	3	Median	1.5881	1.3269	29.75	4	1	Median	1.0313	1.2025	41.537	3	1	Median	0.91132	0.90509	64.19	3	1	Median	1.0703	1.2009	17.27	3	0	Plateau	2194300000	1056500000	1137800000	441150000	210520000	230630000	471560000	266630000	204930000	604560000	252140000	352420000	676990000	327210000	349780000	39784	1282	37432	243878;243879;243880;243881;243882;243883;243884;243885;243886;243887;243888;243889;243890;243891;243892	327250;327251;327252;327253;327254;327255;327256;327257;327258;327259;327260;327261;327262;327263;327264;327265;327266;327267;327268;327269;327270	327267			21	
NSSVNEGSTYHK	1	Unmodified	1321.5899	0.58985744	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	7.3838	6.9608	2;3	1.5427E-07	4724	160511_QHF_FH_JSI12i_2	134.75	115.66			1.0589	1.0649	17.323	8	0	Median	1.3121	1.1476	18.108	2	0	Median	0.72869	0.87903	24.794	2	0	Median	1.11	1.1227	9.1424	2	0	Median	1.0123	1.1433	8.372	2	0	Median	814550000	407160000	407400000	170820000	61090000	109730000	201620000	113110000	88517000	231460000	118740000	112720000	210650000	114220000	96434000	39785	227	37433	243893;243894;243895;243896;243897;243898;243899;243900	327271;327272;327273;327274;327275;327276;327277;327278	327271			8	
NSSYFVEWIPNNVK	1	Unmodified	1695.8257	0.82567103	2075;872;2477;811;4440;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q9BUF5;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB6;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.98	6.24	11	10	10					6	7	12	11	9	12	85.245	81.987	2;3	1.2691E-98	74990	160511_QHF_FH_JSI11i_2	264.84	250.68			0.96301	0.89652	43.65	43	9	Median	0.99975	0.82454	22.389	11	2	Median	0.74298	0.8799	20.707	11	1	Median	0.96483	0.95463	18.415	9	0	Median	1.0718	1.1537	75.728	12	6	Median	33090000000	15102000000	17989000000	5857500000	2716800000	3140600000	7577100000	3608400000	3968800000	9797100000	4485200000	5311800000	9858800000	4291400000	5567400000	39786	872;2075;2477;811;4440;2430	37434	243901;243902;243903;243904;243905;243906;243907;243908;243909;243910;243911;243912;243913;243914;243915;243916;243917;243918;243919;243920;243921;243922;243923;243924;243925;243926;243927;243928;243929;243930;243931;243932;243933;243934;243935;243936;243937;243938;243939;243940;243941;243942;243943;243944	327279;327280;327281;327282;327283;327284;327285;327286;327287;327288;327289;327290;327291;327292;327293;327294;327295;327296;327297;327298;327299;327300;327301;327302;327303;327304;327305;327306;327307;327308;327309;327310;327311;327312;327313;327314;327315;327316;327317;327318;327319;327320;327321;327322;327323;327324;327325;327326;327327;327328;327329;327330;327331;327332;327333;327334;327335;327336;327337;327338;327339;327340;327341;327342;327343;327344;327345;327346;327347;327348;327349;327350;327351;327352;327353;327354;327355;327356;327357;327358;327359;327360;327361;327362;327363;327364;327365;327366;327367;327368;327369;327370;327371;327372;327373;327374;327375;327376;327377;327378;327379;327380;327381;327382;327383;327384;327385;327386;327387;327388;327389;327390;327391;327392;327393;327394;327395;327396;327397	327355			117	
NSSYVHGGLDSNGK	1	Unmodified	1433.6535	0.65352033	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		15.077	14.84	2	2.301E-05	12335	160511_QHF_FH_JSI10i_2	82.85	50.327			2.3411	2.3654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3411	2.3654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	168450000	32210000	136240000	0	0	0	0	0	0	168450000	32210000	136240000	0	0	0	39787	2381	37435	243945;243946	327398;327399	327399			2	
NSSYVHGGLDSNGKPADAVYGQK	2	Unmodified	2363.1142	0.1142015	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.48		16	9							6	4	7	8	34.912	34.287	3;4	6.1193E-24	29766	160511_QHF_FH_JSI11i_3	148.88	140.69			0.93664	0.93348	77.865	23	17	Median	0.9893	0.85201	80.928	6	3	Median	0.68352	0.8348	73.356	4	3	Median	1.7998	1.8274	68.337	7	7	Median	0.86288	0.96423	96.889	6	4	Median	2880200000	1379000000	1501200000	489790000	204200000	285590000	529760000	320060000	209700000	974640000	436040000	538600000	885980000	418710000	467270000	39788	2381	37436	243947;243948;243949;243950;243951;243952;243953;243954;243955;243956;243957;243958;243959;243960;243961;243962;243963;243964;243965;243966;243967;243968;243969;243970;243971	327400;327401;327402;327403;327404;327405;327406;327407;327408;327409;327410;327411;327412;327413;327414;327415;327416;327417;327418;327419;327420;327421;327422;327423;327424;327425;327426;327427;327428;327429;327430;327431;327432;327433;327434;327435;327436;327437;327438;327439;327440;327441;327442;327443	327403			44	
NSTFAEEFAHSIR	0	Unmodified	1507.7056	0.7055559	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	58.968	57.635	3	0.016824	49318	160511_QHF_FH_JSI12i_2	42.785	32.174			1.0856	1.1837	139.05	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0856	1.1837	139.05	2	2	Median	55273000	25646000	29627000	0	0	0	0	0	0	0	0	0	55273000	25646000	29627000	39789	2793	37437	243972;243973	327444;327445	327444			2	
NSTFSEIFK	1	Unmodified	1071.5237	0.52367535	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.51	3	4	1				3	6	1	3	4	6	5	63.575	58.607	2	5.797E-05	50305	160511_QHF_FH_JSI12i_2	97.431	59.872			0.95502	0.98571	18.847	14	2	Median	1.1964	0.99449	12.324	3	0	Median	0.9752	1.1674	20.039	4	0	Median	0.79861	0.80143	20.085	3	1	Plateau	0.82582	0.90564	8.7308	4	1	Median	4852400000	2441700000	2410700000	839490000	432680000	406810000	1099200000	618350000	480800000	1815500000	823870000	991610000	1098300000	566790000	531460000	39790	1322	37438	243974;243975;243976;243977;243978;243979;243980;243981;243982;243983;243984;243985;243986;243987;243988;243989;243990;243991	327446;327447;327448;327449;327450;327451;327452;327453;327454;327455;327456;327457;327458;327459;327460;327461;327462;327463;327464;327465;327466;327467;327468;327469;327470;327471	327451			26	
NSTFSEIFKK	2	Unmodified	1199.6186	0.61863837	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	6.05		14	14					1	10	11	9	10	9	51.623	48.332	2;3	1.2551E-06	40169	160511_QHF_FH_JSI10i_3	121.83	109.6			1.6822	1.6119	115.24	39	37	Median	1.6822	1.4683	98.02	11	10	Median	2.0773	2.4993	108.08	9	9	Median	1.5292	1.4674	121.91	10	9	Median	0.80697	0.88737	145.84	9	9	Median	36699000000	17131000000	19568000000	4201600000	1860200000	2341300000	5791500000	2521800000	3269700000	10952000000	4367600000	6584100000	15754000000	8381800000	7372700000	39791	1322	37439	243992;243993;243994;243995;243996;243997;243998;243999;244000;244001;244002;244003;244004;244005;244006;244007;244008;244009;244010;244011;244012;244013;244014;244015;244016;244017;244018;244019;244020;244021;244022;244023;244024;244025;244026;244027;244028;244029;244030	327472;327473;327474;327475;327476;327477;327478;327479;327480;327481;327482;327483;327484;327485;327486;327487;327488;327489;327490;327491;327492;327493;327494;327495;327496;327497;327498;327499;327500;327501;327502;327503;327504;327505;327506;327507;327508;327509;327510;327511;327512;327513;327514;327515;327516;327517;327518;327519;327520;327521;327522;327523;327524;327525	327485			54	
NSTFSEIFKK	2	Acetyl (K)	1241.6292	0.62920306	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	2	1	73.938	63.254	2	6.37E-11	33752	160513_QHF_FH_JSI11Kac_5	148.91	136.69			0.40057	0.41508	95.075	4	0	Median	NaN	NaN	NaN	0	0	Median	1.617	1.971	NaN	1	0	Median	0.27349	0.26829	24.386	2	0	Median	0.49459	0.54046	NaN	1	0	Median	129320000	96549000	32770000	0	0	0	8196800	2843900	5352900	102410000	81728000	20683000	18711000	11977000	6734300	39792	1322	37439	244031;244032;244033;244034;244035	327526;327527;327528;327529;327530	327528	1254		5	
NSTFTEHLYR	0	Unmodified	1266.5993	0.59929991	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	31.428	30.511	2;3	0.00022221	26034	160511_QHF_FH_JSI12i_2	70.977	66.963			1.0138	1.1287	45.161	7	5	Median	1.2454	1.0828	28.916	2	1	Median	1.0007	1.2325	NaN	1	0	Median	0.76688	0.76677	54.672	2	2	Median	0.99631	1.0862	79.379	2	2	Median	355110000	169660000	185450000	59293000	26315000	32977000	71898000	34454000	37444000	147400000	70245000	77153000	76518000	38642000	37876000	39793	4416	37440	244036;244037;244038;244039;244040;244041;244042;244043	327531;327532;327533;327534;327535;327536;327537;327538	327532			8	
NSTGSQDGPVSNPSSSNSSQDSLHK	1	Unmodified	2516.1011	0.10113021	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.363	18.994	3	3.8879E-07	16283	160511_QHF_FH_JSI10i_1	68.835	65.737			0.5862	0.64073	54.213	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79757	0.94007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43085	0.43671	NaN	1	1	Median	67383000	40049000	27334000	0	0	0	42782000	23752000	19030000	0	0	0	24601000	16297000	8304300	39794	2357	37441	244044;244045	327539;327540;327541	327540			3	
NSTIVFPLPIDMLQGIIGAK	1	Unmodified	2126.1809	0.18094784	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	3	5	3	103.57	103.51	2;3	9.6885E-68	89357	160511_QHF_FH_JSI12i_2	233.02	220.01			0.98372	0.97655	11.807	12	6	Median	1.0203	0.86592	6.5392	2	1	Median	0.72403	0.88643	6.1065	2	1	Median	1.0198	1.0317	8.9421	5	4	Median	1.0385	1.1556	8.9622	3	0	Median	505490000	248880000	256610000	80470000	36934000	43535000	72990000	42003000	30987000	178130000	82109000	96016000	173910000	87833000	86075000	39795	1286	37442	244046;244047;244048;244049;244050;244051;244052;244053;244054;244055;244056;244057;244058	327542;327543;327544;327545;327546;327547;327548;327549;327550;327551;327552;327553;327554;327555;327556;327557;327558	327546			17	
NSTPSEPGSGR	0	Unmodified	1087.4894	0.48941511	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.79	5.7	4	1			3	3	3			1	5	4	4	7.1765	2.1499	2	2.0687E-09	2856	160513_QHF_FH_JSI11Kac_3	126.39	103.61			0.9328	0.93629	9.6204	14	1	Median	1.039	0.83922	NaN	1	0	Median	0.79339	0.93273	8.3864	5	1	Median	0.97566	0.93323	2.6568	4	0	Linear	1.1126	1.0831	10.197	4	0	Linear	4003700000	2051200000	1952500000	904490000	450510000	453980000	1067700000	550620000	517130000	929390000	458560000	470830000	1102100000	591550000	510530000	39796	1758	37443	244059;244060;244061;244062;244063;244064;244065;244066;244067;244068;244069;244070;244071;244072	327559;327560;327561;327562;327563;327564;327565;327566;327567;327568;327569;327570;327571;327572;327573;327574;327575	327564			17	
NSTPSEPGSGRGPPQEEEEEEDEEEEATK	1	Unmodified	3172.3076	0.30761333	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.175	29.577	3	9.8097E-44	26315	160511_QHF_FH_JSI10i_1	181.62	179.34			1.0893	1.0114	6.6089	4	0	Linear	1.286	1.0503	NaN	1	0	Median	0.86241	1.0457	NaN	1	0	Median	1.205	1.1883	NaN	1	0	Median	0.98461	1.0306	NaN	1	0	Median	997630000	526800000	470830000	223060000	110580000	112480000	287400000	174940000	112460000	178730000	82721000	96009000	308440000	158550000	149880000	39797	1758	37444	244073;244074;244075;244076	327576;327577;327578;327579;327580;327581;327582;327583;327584;327585;327586;327587;327588;327589;327590;327591;327592;327593	327587			18	
NSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIR	1	Unmodified	4110.7534	0.75337271	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	45.473	45	4	3.6254E-12	40579	160511_QHF_FH_JSI11i_1	61.283	60.579			0.7687	0.85014	11.364	4	0	Median	NaN	NaN	NaN	0	0	Median	0.69192	0.81262	10.566	2	0	Median	1.0057	0.98897	NaN	1	0	Median	0.80365	0.82536	NaN	1	0	Median	501940000	271600000	230340000	0	0	0	219090000	119970000	99114000	94724000	45756000	48968000	188120000	105870000	82255000	39798	1758	37445	244077;244078;244079;244080	327594;327595;327596;327597;327598;327599;327600	327595			7	
NSTSSQSQTSTASRK	1	Unmodified	1568.739	0.73904087	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	4.6161	-4.8485	3	0.054539	1291	160513_QHF_FH_JSI11Kac_5	19.075	9.7916			1.1311	1.1125	15.699	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94547	1.0921	NaN	1	0	Median	1.1311	1.1125	NaN	1	0	Median	0.76591	0.84024	NaN	1	0	Median	6577700	3150400	3427400	0	0	0	1403300	662820	740460	4022700	1818600	2204100	1151800	668970	482790	39799	3143	37446	244081;244082;244083	327601	327601			1	
NSTTDQVYQAIAAK	1	Unmodified	1508.7471	0.74708636	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	54.483	53.821	2	0.00018511	48819	160511_QHF_FH_JSI12i_1	108.56	101.44			0.64616	0.92623	25.242	4	3	Linear	1.0082	0.83733	NaN	1	1	Median	0.91833	1.0863	NaN	1	1	Median	0.65012	0.62102	NaN	1	0	Median	0.99628	1.0246	NaN	1	1	Median	434260000	261700000	172560000	98357000	59298000	39060000	94068000	52431000	41637000	153040000	102030000	51017000	88790000	47945000	40845000	39800	4164	37447	244084;244085;244086;244087;244088	327602;327603;327604;327605;327606;327607	327604			6	
NSTWSGESK	1	Unmodified	994.43559	0.43558863	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.6	4	4	2			2	3			3	4	4	4	10.475	7.5351	2	2.6123E-05	6655	160511_QHF_FH_JSI11i_2	104.2	99.345			0.84734	0.86362	34.951	15	3	Median	0.81086	0.67713	48.949	3	2	Plateau	0.72179	0.8818	40.04	4	0	Median	0.93831	0.91762	23.866	4	1	Median	0.76855	0.84422	34.58	4	0	Median	10866000000	6337100000	4528700000	1662100000	986100000	675990000	3892700000	2515400000	1377300000	2341600000	1101100000	1240500000	2969400000	1734600000	1234900000	39801	1154	37448	244089;244090;244091;244092;244093;244094;244095;244096;244097;244098;244099;244100;244101;244102;244103	327608;327609;327610;327611;327612;327613;327614;327615;327616;327617;327618;327619;327620;327621;327622;327623;327624;327625;327626;327627;327628;327629;327630	327623			23	
NSVEVALNK	1	Unmodified	972.52401	0.52400971	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	29.903	26.788	2	0.00057567	22469	160511_QHF_FH_JSI11i_2	78.113	53.958			0.88156	0.92859	36.375	11	4	Median	1.6846	1.4224	14.518	2	1	Median	0.71761	0.85408	6.2327	3	0	Median	0.88639	0.8765	25.401	3	1	Median	1.3983	1.5261	64.558	3	2	Plateau	1446800000	767950000	678880000	309350000	147030000	162330000	433990000	281040000	152940000	372820000	187030000	185800000	330680000	152860000	177820000	39802	1823	37449	244104;244105;244106;244107;244108;244109;244110;244111;244112;244113;244114	327631;327632;327633;327634;327635;327636;327637;327638;327639;327640;327641;327642	327641			11	
NSVFQQGMK	1	Unmodified	1037.4964	0.49641475	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	2	3	1	25.544	24.987	2	9.7099E-06	21545	160511_QHF_FH_JSI9i_2	106.36	74.001			1.0661	1.1233	21.303	6	4	Median	NaN	NaN	NaN	0	0	Median	1.0189	1.2329	8.1215	2	1	Median	1.0718	1.0636	21.401	3	3	Median	1.182	1.3347	NaN	1	0	Median	1122600000	529380000	593240000	0	0	0	313510000	152200000	161310000	655100000	295040000	360050000	154020000	82143000	71872000	39803	821;1032	37450	244115;244116;244117;244118;244119;244120;244121;244122	327643;327644;327645;327646;327647;327648;327649;327650;327651	327647			9	
NSVFQQGMK	1	Oxidation (M)	1053.4913	0.49132937	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	1	0			By MS/MS	By MS/MS	8	6		1					1					1	1	21.39	13.742	2	0.0056624	11735	160511_QHF_FH_JSI12i_2	66.073	40.514			1.0702	1.0585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0702	1.0585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2393100	1322700	1070400	0	0	0	0	0	0	2393100	1322700	1070400	0	0	0	39804	821;1032	37450	244123;244124	327652;327653	327652		348	2	
NSVFQQGMKNK	2	Acetyl (K)	1321.6449	0.6448699	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	1	0	0	1			By MS/MS		14	0							1					1		42.176	32.133	2	2.6256E-10	19370	160513_QHF_FH_JSI11Kac_4	123.86	115.33			0.088764	0.086552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.088764	0.086552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5669200	5429100	240090	0	0	0	0	0	0	5669200	5429100	240090	0	0	0	39805	821;1032	37451	244125	327654	327654	471		1	
NSVGFSSQLYGYALLGK	1	Unmodified	1802.9203	0.9202997	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	90.744	89.872	2	1.0077E-11	42394	160513_QHF_FH_JSI11Kac_6	128.54	104.79			2.9634	3.2481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9634	3.2481	NaN	1	1	Median	33377000	8432800	24944000	0	0	0	0	0	0	0	0	0	33377000	8432800	24944000	39806	3844	37452	244126;244127	327655;327656	327656			2	
NSVLGPLYSQDR	0	Unmodified	1347.6783	0.67827852	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	51.41	50.014	2	7.3293E-05	43164	160511_QHF_FH_JSI11i_2	85.813	67.501			0.74905	0.81286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74905	0.81286	NaN	1	1	Median	25505000	12816000	12689000	0	0	0	0	0	0	0	0	0	25505000	12816000	12689000	39807	3312	37453	244128;244129;244130	327657;327658;327659	327659			3	
NSVLMSGFSHK	1	Unmodified	1205.5863	0.58629239	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		3	3						3	4	1	2	2	39.578	35.838	2;3	0.00016712	30054	160511_QHF_FH_JSI12i_3	92.611	68.581			0.4259	0.40614	132.36	8	8	Median	2.3252	1.9781	156.96	3	3	Median	0.31399	0.35854	NaN	1	1	Median	0.33085	0.32276	87.47	2	2	Median	0.25777	0.27544	63.331	2	2	Median	554640000	374080000	180550000	145940000	31616000	114320000	4983900	4072300	911640	274550000	237030000	37515000	129160000	101360000	27804000	39808	2168	37454	244131;244132;244133;244134;244135;244136;244137;244138;244139	327660;327661;327662;327663;327664;327665;327666;327667;327668	327667			9	
NSVPVTVAMVER	0	Unmodified	1300.6809	0.68092105	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				54.912	53.882	2	0.060864	47454	160511_QHF_FH_JSI9i_2	45.879	23.238			1.8764	1.592	NaN	1	0	Median	1.8764	1.592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164750000	59715000	105040000	164750000	59715000	105040000	0	0	0	0	0	0	0	0	0	39809	5603	37455	244140	327669	327669			0	
NSVQTPVENSTNSQHQVK	1	Unmodified	1995.961	0.96099532	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	1	3	17.031	16.454	3	1.3737E-07	13317	160511_QHF_FH_JSI11i_2	118.15	107.68			0.8464	0.9232	29.876	6	1	Median	1.0972	0.98237	NaN	1	0	Median	1.0968	1.317	47.803	2	1	Median	0.89088	0.90737	NaN	1	0	Median	0.78858	0.84587	4.4558	2	0	Median	271090000	138840000	132250000	46664000	22692000	23972000	80316000	35353000	44963000	62016000	34310000	27706000	82098000	46489000	35609000	39810	5301	37456	244141;244142;244143;244144;244145;244146;244147	327670;327671;327672;327673;327674;327675;327676	327676			7	
NSVSNFLHSLER	0	Unmodified	1401.7001	0.70007659	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			68.473	66.993	3	0.036031	56031	160511_QHF_FH_JSI10i_3	25.322	17.597			1.9637	2.3114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9637	2.3114	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16203000	4598400	11604000	0	0	0	16203000	4598400	11604000	0	0	0	0	0	0	39811	2348	37457	244148	327677	327677			1	
NSVSQISVLSGGK	1	Unmodified	1274.683	0.68302954	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	5.64		1	1				3			1	1	1	2	51.705	44.683	2	1.0727E-19	25894	160513_QHF_FH_JSI11Kac_4	150.06	131.08			0.93669	0.91604	28.684	5	2	Median	1.5245	1.2843	NaN	1	1	Median	0.76779	0.91604	NaN	1	0	Median	0.93669	0.91105	NaN	1	0	Median	1.0271	1.1248	49.093	2	1	Median	256590000	98759000	157830000	10932000	5495100	5437300	20779000	10373000	10406000	36282000	20623000	15659000	188590000	62268000	126330000	39812	255	37458	244149;244150;244151;244152;244153	327678;327679;327680;327681;327682;327683	327681			6	
NSVTPDMMEEMYK	1	Oxidation (M)	1589.6412	0.64116601	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	3.09	13					1				4	5	2	3	47.833	46.483	2	9.1629E-05	39494	160511_QHF_FH_JSI9i_1	107.06	100.81			0.96117	0.97425	17.166	13	3	Median	1.1713	0.97425	23.187	3	0	Median	0.97808	1.1616	15.438	5	2	Median	0.91749	0.89551	2.9089	2	0	Median	0.94367	0.96492	12.67	3	1	Median	892810000	447080000	445730000	180950000	79024000	101920000	268480000	135560000	132920000	193960000	104460000	89498000	249430000	128040000	121380000	39813	1590	37459	244154;244155;244156;244157;244158;244159;244160;244161;244162;244163;244164;244165;244166;244167	327684;327685;327686;327687;327688;327689;327690;327691;327692;327693;327694;327695;327696;327697;327698;327699;327700;327701;327702;327703;327704	327698		1253;1254;1255	21	
NSVTPDMMEEMYK	1	Unmodified	1573.6463	0.64625138	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.096	62.245	2	8.9035E-05	55180	160511_QHF_FH_JSI10i_2	96.64	93.319			0.74022	0.91647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74022	0.91647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70045000	45685000	24360000	0	0	0	70045000	45685000	24360000	0	0	0	0	0	0	39814	1590	37459	244168	327705	327705			1	
NSVTPDMMEEMYKK	2	Unmodified	1701.7412	0.7412144	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.655	3	8	3							3	4	4	3	55.787	54.918	2;3	3.848E-07	48413	160511_QHF_FH_JSI10i_2	143.97	114.67			1.0433	1.1069	19.659	14	1	Median	1.0425	0.87116	11.691	3	0	Plateau	0.98933	1.1722	16.88	4	0	Median	0.94981	0.91696	15.131	4	1	Median	1.163	1.3046	9.1309	3	0	Median	3936800000	1796200000	2140600000	674560000	238330000	436230000	951970000	480760000	471210000	1415200000	659910000	755340000	894980000	417190000	477790000	39815	1590	37460	244169;244170;244171;244172;244173;244174;244175;244176;244177;244178;244179;244180;244181;244182	327706;327707;327708;327709;327710;327711;327712;327713;327714;327715;327716;327717;327718;327719;327720;327721;327722;327723;327724;327725;327726;327727	327726			22	
NSVTPDMMEEMYKK	2	Acetyl (K);2 Oxidation (M)	1775.7416	0.74160833	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	2	1			By MS/MS		13	0						2						2		46.219	36.898	2	0.016411	21373	160513_QHF_FH_JSI11Kac_3	44.188	40.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2179100	2179100	0	0	0	0	0	0	0	2179100	2179100	0	0	0	0	39816	1590	37460	244183;244184	327728;327729	327729	1608	1253;1254;1255	2	
NSVVEASEAAYK	1	Unmodified	1266.6092	0.6091959	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	5.92	4	3				3	2			1	4	4	3	35.485	31.047	2	2.7955E-11	27224	160511_QHF_FH_JSI10i_2	152.54	140.31			0.90774	0.85861	18.78	9	0	Median	0.96059	0.77758	NaN	1	0	Median	0.63423	0.75477	6.7909	3	0	Plateau	0.6632	0.64162	30.078	3	0	Plateau	0.96231	1.0151	10.594	2	0	Median	1990300000	1086800000	903500000	405090000	195500000	209580000	545190000	348780000	196410000	536060000	279410000	256660000	503940000	263090000	240850000	39817	2224	37461	244185;244186;244187;244188;244189;244190;244191;244192;244193;244194;244195;244196	327730;327731;327732;327733;327734;327735;327736;327737;327738;327739;327740;327741;327742;327743;327744;327745	327745			16	
NSWGEEWGMGGYVK	1	Unmodified	1598.6824	0.68237762	875	P07711	CTSL	Cathepsin L1;Cathepsin L1 heavy chain;Cathepsin L1 light chain	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	71.422	70.383	2	0.0013738	62496	160511_QHF_FH_JSI10i_2	77.305	71.202			0.91815	1.05	57.996	2	1	Median	NaN	NaN	NaN	0	0	Median	0.56312	0.6968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.497	1.5824	NaN	1	0	Median	48180000	24005000	24176000	0	0	0	24628000	14881000	9746800	0	0	0	23553000	9123900	14429000	39818	875	37462	244197;244198	327746;327747	327747			2	
NSWGEPWGER	0	Unmodified	1216.5261	0.52613497	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	47.056	46.061	2	1.0586E-05	39660	160511_QHF_FH_JSI11i_2	104.39	82.308			1.024	1.0125	11.98	5	0	Median	1.1055	0.93522	11.227	2	0	Median	0.74257	0.92313	NaN	1	0	Median	1.1409	1.1613	NaN	1	0	Median	0.9767	1.0882	NaN	1	0	Median	459410000	228260000	231150000	102640000	48427000	54217000	109760000	59490000	50269000	140290000	66822000	73466000	106710000	53519000	53196000	39819	5250	37463	244199;244200;244201;244202;244203;244204	327748;327749;327750;327751;327752;327753;327754;327755;327756;327757;327758;327759	327754			12	
NSWGTGWGENGYFR	0	Unmodified	1629.6961	0.69605384	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		68.543	67.845	2	0.00093095	60140	160511_QHF_FH_JSI10i_2	67.385	61.726			0.87867	1.0003	19.806	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71284	0.86959	NaN	1	0	Median	1.0831	1.1507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77035000	38214000	38821000	0	0	0	37959000	24032000	13928000	39075000	14183000	24893000	0	0	0	39820	1806	37464	244205;244206	327760;327761;327762	327761			3	
NSYEIEYMEK	1	Unmodified	1304.5595	0.55946851	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.71	44.317	2	0.0095294	40095	160511_QHF_FH_JSI11i_1	58.592	51.372			0.81123	0.78854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81123	0.78854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74902000	39781000	35121000	0	0	0	0	0	0	74902000	39781000	35121000	0	0	0	39821	681	37465	244207	327763	327763			1	
NSYIAYIEDHSGNGTFVNTELVGK	1	Unmodified	2627.2504	0.25036063	757	O96017	CHEK2	Serine/threonine-protein kinase Chk2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.236	84.642	3	0.03745	74446	160511_QHF_FH_JSI11i_2	22.407	16.049			0.42322	0.42176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42322	0.42176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30620000	14604000	16015000	0	0	0	0	0	0	30620000	14604000	16015000	0	0	0	39822	757	37466	244208	327764	327764			1	
NSYLEVLLK	1	Unmodified	1077.607	0.60701105	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.54	3	6	2					2	1	2	4	5	3	79.35	77.306	2	2.756E-05	67684	160511_QHF_FH_JSI12i_2	103.55	73.38			1.0758	1.0439	57.88	13	10	Median	1.3047	1.1233	104.36	2	2	Median	0.85044	0.96711	69.569	4	4	Median	0.99387	0.96674	39.791	4	2	Median	1.4946	1.6939	64.118	3	2	Median	1685300000	839240000	846070000	363050000	178810000	184240000	548300000	313880000	234410000	417530000	189440000	228100000	356430000	157110000	199320000	39823	2628	37467	244209;244210;244211;244212;244213;244214;244215;244216;244217;244218;244219;244220;244221;244222	327765;327766;327767;327768;327769;327770;327771;327772;327773;327774;327775;327776;327777;327778;327779;327780;327781;327782;327783	327768			19	
NSYVAGQYDDAASYQR	0	Unmodified	1806.7809	0.78090569	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.21	9	3				3	1			4	3	4	5	39.986	37.168	2;3	6.0226E-52	33799	160511_QHF_FH_JSI12i_1	252.42	252.42			1.0182	1.0462	13.341	12	2	Median	1.4276	1.1618	17.678	2	0	Median	0.80191	0.93609	14.21	3	0	Plateau	1.1112	1.0872	10.224	2	0	Median	1.003	1.0676	15.885	5	2	Median	5173200000	2288100000	2885200000	711570000	230790000	480790000	1624400000	659320000	965070000	1487600000	649100000	838510000	1349700000	748850000	600820000	39824	1000	37468	244223;244224;244225;244226;244227;244228;244229;244230;244231;244232;244233;244234;244235;244236;244237;244238	327784;327785;327786;327787;327788;327789;327790;327791;327792;327793;327794;327795;327796;327797;327798;327799;327800;327801;327802;327803;327804;327805	327788			22	
NTAASLQQWK	1	Unmodified	1145.5829	0.58292157	2748	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	33.991	33.246	2	8.7529E-06	28177	160511_QHF_FH_JSI11i_2	140.11	118.58			0.7258	0.78239	34.767	6	4	Median	0.92691	0.78887	NaN	1	0	Median	0.67975	0.81091	6.2304	2	2	Median	1.1347	1.1333	64.056	2	2	Median	0.64905	0.72571	NaN	1	0	Median	565350000	290660000	274690000	82940000	44704000	38236000	186910000	108580000	78334000	208240000	92464000	115770000	87256000	44911000	42345000	39825	2748	37469	244239;244240;244241;244242;244243;244244	327806;327807;327808;327809;327810;327811;327812;327813	327811			8	
NTAELQPESGK	1	Unmodified	1172.5673	0.56733108	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.77	7					4				2	3	4	2	17.21	14.246	2	3.8827E-06	11962	160511_QHF_FH_JSI9i_1	122.69	110.06			2.0272	1.6347	105.78	11	11	Median	0.96659	0.77758	105.08	2	2	Median	2.3748	2.8029	111.28	3	3	Median	1.5857	1.5674	114.4	4	4	Median	1.0853	1.1693	162.24	2	2	Median	1633700000	828820000	804890000	520090000	274230000	245860000	430480000	204720000	225760000	431760000	179900000	251860000	251380000	169970000	81415000	39826	279	37470	244245;244246;244247;244248;244249;244250;244251;244252;244253;244254;244255	327814;327815;327816;327817;327818;327819;327820;327821;327822;327823;327824	327822			11	
NTAELQPESGKR	1	Unmodified	1328.6684	0.66844211	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				11.048	10.486	2	0.014788	8267	160511_QHF_FH_JSI9i_2	49.5	21.102			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39827	279	37471	244256	327825	327825			1	
NTAEQFLSR	0	Unmodified	1064.5251	0.52507234	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	33.528	32.604	2	0.0078629	27720	160511_QHF_FH_JSI12i_2	53.756	33.236			1.1041	1.6193	22.134	3	3	Plateau	1.8923	1.6193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1041	1.1079	NaN	1	1	Median	1.4956	1.6317	NaN	1	1	Median	136870000	66186000	70689000	29921000	11575000	18346000	0	0	0	68395000	38364000	30031000	38558000	16247000	22312000	39828	940	37472	244257;244258;244259;244260	327826;327827;327828;327829;327830	327827			5	
NTAEWLLSHTK	1	Unmodified	1298.6619	0.66190017	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.1		13	8						8	6	5	9	9	54.978	52.037	2;3	5.4179E-10	44723	160511_QHF_FH_JSI12i_2	138.76	109.6			0.6053	0.67195	110.05	27	23	Median	0.48891	0.4154	111.22	6	5	Median	1.3649	1.6267	106.46	5	4	Median	0.80368	0.7661	130.39	8	7	Median	0.64337	0.71178	102.1	8	7	Median	4708400000	2173400000	2535000000	626050000	352470000	273580000	951310000	478700000	472610000	1753100000	758550000	994510000	1378000000	583690000	794300000	39829	771	37473	244261;244262;244263;244264;244265;244266;244267;244268;244269;244270;244271;244272;244273;244274;244275;244276;244277;244278;244279;244280;244281;244282;244283;244284;244285;244286;244287;244288;244289	327831;327832;327833;327834;327835;327836;327837;327838;327839;327840;327841;327842;327843;327844;327845;327846;327847;327848;327849;327850;327851;327852;327853;327854;327855;327856;327857;327858;327859;327860;327861;327862	327834			32	
NTAMDAQEALAR	0	Unmodified	1289.6034	0.60339901	3227	Q7L4I2	RSRC2	Arginine/serine-rich coiled-coil protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		33.658	33.319	2	0.00096552	29785	160511_QHF_FH_JSI11i_1	68.786	41.897			0.98082	1.1637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98082	1.1637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55556000	28077000	27480000	0	0	0	55556000	28077000	27480000	0	0	0	0	0	0	39830	3227	37474	244290;244291	327863;327864	327863			2	
NTAPDNGPILLQAQTTQR	0	Unmodified	1936.9967	0.99665254	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	51.501	50.962	2	1.3658E-10	45832	160511_QHF_FH_JSI10i_1	123.38	108.51			1.7259	1.7552	14.344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6093	1.5859	NaN	1	0	Median	1.851	1.9426	NaN	1	0	Median	58040000	25129000	32910000	0	0	0	0	0	0	27689000	12456000	15233000	30350000	12673000	17677000	39831	2304	37475	244292;244293;244294;244295	327865;327866;327867;327868	327868			4	
NTCEAVVLGTLHPR	0	Unmodified	1565.7984	0.79841043	4927	Q9NQT4	EXOSC5	Exosome complex component RRP46	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	52.096	51.146	3	0.00050395	43933	160511_QHF_FH_JSI12i_2	57.414	52.848			1.0309	1.0566	24.021	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.3498	1.6669	NaN	1	1	Median	1.0309	1.0566	NaN	1	0	Median	1.0579	1.1641	NaN	1	0	Median	118080000	58948000	59134000	0	0	0	28659000	15954000	12705000	58592000	29065000	29527000	30832000	13930000	16902000	39832	4927	37476	244296;244297;244298	327869;327870;327871;327872	327869			4	
NTCTSVYTK	1	Unmodified	1072.4859	0.48590964	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.29	6.32	3					1	3				1	3	3	14.887	10.521	2	5.797E-05	9210	160511_QHF_FH_JSI11i_1	97.431	73.458			1.0604	1.246	54.51	7	4	Median	NaN	NaN	NaN	0	0	Median	1.0604	1.246	NaN	1	0	Median	0.60279	0.58618	46.9	3	2	Median	1.668	1.7786	62.987	3	2	Median	893670000	381750000	511920000	0	0	0	234620000	114140000	120480000	308000000	146260000	161740000	351050000	121340000	229710000	39833	2094	37477	244299;244300;244301;244302;244303;244304;244305	327873;327874;327875;327876;327877;327878;327879;327880;327881;327882	327873			10	
NTCTSVYTKDR	1	Acetyl (K)	1385.6245	0.62452839	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	28.608	20.766	2	0.017201	12366	160513_QHF_FH_JSI12Kac_3	51.927	47.476			1.3429	1.5087	40.873	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7616	2.0143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0237	1.13	NaN	1	0	Median	3347100	1319100	2028100	0	0	0	1313500	492100	821390	0	0	0	2033600	826950	1206700	39834	2094	37478	244306;244307	327883;327884	327883	2203		2	
NTDDDRPPR	0	Unmodified	1084.4897	0.48974946	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	5.2807	4.8981	2;3	0.0086253	2788	160511_QHF_FH_JSI12i_2	69.825	53.049			0.72219	0.77108	0.8741	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76745	0.77586	NaN	1	1	Median	0.6796	0.76633	NaN	1	0	Median	153140000	80021000	73114000	0	0	0	0	0	0	123520000	62338000	61180000	29618000	17683000	11935000	39835	2502	37479	244308;244309	327885;327886	327885			2	
NTDEMVELR	0	Oxidation (M)	1121.5023	0.50228798	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.03	9					6	1			3	5	4	4	25.552	21.746	2	0.0012819	30576	160511_QHF_FH_JSI9i_1	72.928	62.055			0.88894	0.96665	63.883	16	1	Median	0.29694	0.24131	168.23	3	1	Plateau	0.81682	0.96035	18.29	5	0	Median	1.0285	1.0018	15.36	4	0	Median	0.88894	0.93167	19.306	4	0	Median	1160100000	578100000	582000000	403740000	180280000	223450000	239600000	123930000	115670000	248300000	133850000	114450000	268480000	140040000	128440000	39836	1975	37480	244310;244311;244312;244313;244314;244315;244316;244317;244318;244319;244320;244321;244322;244323;244324;244325	327887;327888;327889;327890;327891;327892;327893;327894;327895;327896;327897;327898;327899;327900;327901	327896		1640	14	
NTDEMVELR	0	Unmodified	1105.5074	0.50737336	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.7	5	5	1			3	3			3	6	4	4	38.924	34.559	2	3.5759E-05	31057	160511_QHF_FH_JSI11i_1	99.815	85.039			1.0397	1.126	65.444	15	4	Median	2.1365	1.8469	145.1	3	1	Median	0.92335	1.1248	35.981	6	3	Median	0.83285	0.81038	20.555	3	0	Plateau	1.0397	1.126	26.245	3	0	Median	10176000000	4949500000	5226300000	2676500000	968560000	1708000000	2742400000	1426400000	1316100000	2660500000	1350000000	1310500000	2096400000	1204700000	891790000	39837	1975	37480	244326;244327;244328;244329;244330;244331;244332;244333;244334;244335;244336;244337;244338;244339;244340;244341;244342	327902;327903;327904;327905;327906;327907;327908;327909;327910;327911;327912;327913;327914;327915;327916;327917;327918;327919;327920;327921;327922;327923;327924;327925;327926;327927;327928;327929;327930;327931	327903			30	
NTDETFFGVQWVRP	0	Unmodified	1694.8053	0.80526994	1399	P32970	CD70	CD70 antigen	yes	yes	0	0	0	1			By MS/MS	By MS/MS	5.5	6.06		3							1			1	3	93.134	92.479	2;3	2.3821E-15	41609	160513_QHF_FH_JSI12Kac_6	140.14	125.88			0.86711	0.95277	0.73677	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92088	0.94763	NaN	1	0	Median	0.85186	0.9595	0.22989	2	0	Median	147410000	77468000	69938000	0	0	0	0	0	0	90720000	46935000	43785000	56685000	30532000	26152000	39838	1399	37481	244343;244344;244345;244346	327932;327933;327934;327935;327936;327937;327938;327939	327939			8	
NTDQASMPDNTAAQK	1	Oxidation (M)	1606.6893	0.68931349	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					2	1	3	2	9.7279	8.3726	2	1.1473E-05	13764	160511_QHF_FH_JSI11i_1	122.46	105.43			1.1256	1.0769	58.063	7	6	Median	1.4487	1.1821	39.747	2	2	Median	0.6069	0.68928	NaN	1	1	Median	1.1256	1.0769	90.31	3	2	Median	1.1644	1.1977	NaN	1	1	Median	224660000	104320000	120340000	74162000	23254000	50908000	34722000	22440000	12283000	84772000	43912000	40860000	31004000	14712000	16292000	39839	1436;1445	37482	244347;244348;244349;244350;244351;244352;244353;244354	327940;327941;327942;327943;327944;327945;327946;327947	327941		1097	8	
NTDQASMPDNTAAQK	1	Unmodified	1590.6944	0.69439886	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	17.953	16.155	2	8.2544E-40	13681	160511_QHF_FH_JSI10i_1	200.44	164.9			0.98973	0.97048	14.329	5	0	Median	1.1696	0.96277	NaN	1	0	Median	0.63531	0.74545	NaN	1	0	Median	1.0728	1.035	9.0996	2	0	Median	0.96015	0.9706	NaN	1	0	Median	752390000	374530000	377860000	169460000	69353000	100110000	213400000	127690000	85709000	188160000	90253000	97905000	181370000	87230000	94139000	39840	1436;1445	37482	244355;244356;244357;244358;244359	327948;327949;327950;327951;327952;327953;327954;327955;327956;327957;327958;327959	327954			12	
NTDSVVIFSGEGSDELTQGYIYFHK	1	Unmodified	2805.3134	0.31335481	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		93.71	93.314	3	0.014864	81912	160511_QHF_FH_JSI11i_2	30.585	28			1.391	1.365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.391	1.365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13140000	4665700	8474800	0	0	0	0	0	0	13140000	4665700	8474800	0	0	0	39841	900	37483	244360	327960	327960			1	
NTDVAQSPEAPK	1	Unmodified	1255.6044	0.60444487	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	3	2	2	20.586	16.721	2	2.8827E-15	14286	160511_QHF_FH_JSI10i_1	143.28	111.9			1.0001	0.93053	43.551	6	4	Median	1.1004	0.888	NaN	1	0	Median	2.042	2.227	NaN	1	1	Median	0.73587	0.71538	7.7443	2	2	Median	1.0795	1.1306	20.923	2	1	Median	493060000	247760000	245300000	176130000	79123000	97007000	947460	340920	606540	138460000	71381000	67079000	177520000	96914000	80609000	39842	5213	37484	244361;244362;244363;244364;244365;244366;244367;244368	327961;327962;327963;327964;327965;327966;327967;327968;327969	327964			9	
NTDVAQSPEAPKQEAPAK	2	Unmodified	1879.9276	0.92756992	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	20.532	19.895	3	0.0018436	17340	160511_QHF_FH_JSI12i_1	53.188	43.905			1.4386	1.3016	11.92	2	2	Median	1.7637	1.416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1735	1.1963	NaN	1	1	Median	45833000	25050000	20783000	12997000	3559300	9438100	14195000	14195000	0	0	0	0	18640000	7296100	11344000	39843	5213	37485	244369;244370;244371	327970;327971;327972	327970			3	
NTDVVATLK	1	Unmodified	959.52876	0.52876073	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		34.591	34.295	2	0.0036044	30646	160511_QHF_FH_JSI10i_1	70.056	44.32			0.84478	0.8855	43.182	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0256	1.2017	NaN	1	1	Median	0.69583	0.6525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144050000	103910000	40138000	0	0	0	72733000	50294000	22439000	71318000	53618000	17699000	0	0	0	39844	3277	37486	244372;244373	327973;327974	327974			2	
NTEAVTLNFRGEK	1	Unmodified	1477.7525	0.75250609	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.491	38.311	3	0.00028033	32605	160511_QHF_FH_JSI12i_3	68.809	55.13			1.7929	1.82	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7929	1.82	NaN	1	0	Median	51142000	16349000	34793000	0	0	0	0	0	0	0	0	0	51142000	16349000	34793000	39845	5366	37487	244374	327975	327975			1	
NTEDITQEEYGEFYK	1	Unmodified	1864.8003	0.80030372	2870	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.315	69.948	2	0.0041173	63595	160511_QHF_FH_JSI11i_1	55.401	42.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39846	2870	37488	244375	327976	327976			1	
NTEDLQCYVKPTK	2	Acetyl (K)	1636.7767	0.77667193	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	60.023	50.706	2;3	1.9435E-06	26676	160513_QHF_FH_JSI12Kac_3	131.13	107.28			8.1062	9.5504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.1062	9.5504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8601400	59013	8542400	0	0	0	1452300	59013	1393200	0	0	0	7149200	0	7149200	39847	3857	37489	244376;244377	327977;327978	327977	2966		2	
NTEDLTEEWLR	0	Unmodified	1404.6521	0.65212334	1926	P60983	GMFB	Glia maturation factor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	67.93	67.291	2	0.0031545	60952	160511_QHF_FH_JSI10i_1	69.65	53.453			0.83996	0.7199	25.147	3	3	Median	0.83996	0.7199	NaN	1	1	Median	0.53493	0.62502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99674	1.0189	NaN	1	1	Median	157500000	69921000	87584000	37401000	14889000	22512000	51770000	31640000	20130000	0	0	0	68333000	23393000	44941000	39848	1926	37490	244378;244379;244380	327979;327980;327981	327980			3	
NTEDLTEEWLREK	1	Unmodified	1661.7897	0.78967946	1926	P60983	GMFB	Glia maturation factor beta	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	61.779	60.465	3	0.0029196	51930	160511_QHF_FH_JSI12i_2	58.487	39.654			2.3571	2.4906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3571	2.4906	NaN	1	1	Median	23815000	5327500	18488000	0	0	0	0	0	0	0	0	0	23815000	5327500	18488000	39849	1926	37491	244381	327982	327982			1	
NTEEEGLK	1	Unmodified	918.42944	0.42944062	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	9.4761	6.8447	2	0.0017787	6357	160511_QHF_FH_JSI12i_1	85.064	57.539			1.4999	1.3998	46.029	6	1	Median	1.5562	1.289	NaN	1	0	Median	1.4639	1.7298	NaN	1	0	Median	1.1897	1.1652	37.613	2	0	Median	0.87926	0.92712	80.456	2	1	Median	1933700000	738130000	1195600000	506740000	177420000	329320000	506820000	206390000	300430000	436620000	170750000	265870000	483510000	183570000	299930000	39850	5124	37492	244382;244383;244384;244385;244386;244387	327983;327984;327985;327986;327987	327984			5	
NTEIGFLQDALSK	1	Unmodified	1434.7355	0.73545904	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									1	2	3	81.934	81.38	2	3.7281E-05	71462	160511_QHF_FH_JSI11i_2	116.03	100.13			1.1179	1.0746	108.23	5	2	Median	NaN	NaN	NaN	0	0	Median	0.70283	0.83681	NaN	1	1	Median	3.6176	3.5502	169.01	2	0	Median	1.1741	1.2467	23.186	2	1	Median	215590000	78482000	137110000	0	0	0	36761000	20800000	15961000	93187000	20522000	72665000	85647000	37161000	48486000	39851	3119	37493	244388;244389;244390;244391;244392;244393	327988;327989;327990;327991;327992;327993;327994	327994			7	
NTELAVFHDETEIQNQTDLLSLSGK	1	Unmodified	2801.3719	0.37193232	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	90.712	90.316	3	1.6812E-42	79443	160511_QHF_FH_JSI11i_2	187.38	184.28			1.0173	1.008	19.028	8	2	Median	1.1799	1.0146	NaN	1	0	Median	1.0308	1.2388	30.076	2	0	Median	1.0173	0.99392	12.449	2	0	Median	0.85057	0.98034	21.089	3	2	Median	689130000	353100000	336040000	110080000	40982000	69099000	175750000	103290000	72460000	236170000	122130000	114050000	167130000	86701000	80433000	39852	1520	37494	244394;244395;244396;244397;244398;244399;244400;244401	327995;327996;327997;327998;327999;328000;328001;328002;328003;328004;328005;328006;328007;328008;328009;328010;328011;328012;328013;328014	328009			20	
NTENNDVEISETK	1	Unmodified	1491.6689	0.66889562	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			20.08	19.222	2	0.00012499	16515	160511_QHF_FH_JSI10i_1	86.911	73.102			1.0744	1.2541	33.119	3	2	Plateau	1.0456	0.86669	35.825	2	2	Median	1.0744	1.2541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113200000	50084000	63113000	65317000	26746000	38571000	47880000	23338000	24542000	0	0	0	0	0	0	39853	2977	37495	244402;244403;244404	328015;328016;328017	328015			3	
NTESSAFGGSLPAK	1	Unmodified	1364.6572	0.65720872	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		37.145	36.878	2	0.051032	33246	160511_QHF_FH_JSI11i_1	50.314	42.668			1.3186	1.2672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3186	1.2672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47861000	23352000	24509000	0	0	0	0	0	0	47861000	23352000	24509000	0	0	0	39854	3271	37496	244405	328018	328018			0	
NTETEESLVK	1	Unmodified	1148.5561	0.55609769	2763	Q16774	GUK1	Guanylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	21.881	21.354	2	0.0010821	18330	160511_QHF_FH_JSI11i_1	79.16	56.447			1.0669	1.086	71.197	8	8	Median	1.1378	0.93268	107.8	2	2	Median	1.032	1.2034	113.05	2	2	Median	1.1038	1.0497	74.368	2	2	Median	1.0669	1.0886	69.895	2	2	Median	518480000	264470000	254010000	135420000	72609000	62808000	118820000	61173000	57645000	109880000	53068000	56808000	154370000	77620000	76754000	39855	2763	37497	244406;244407;244408;244409;244410;244411;244412;244413	328019;328020;328021;328022;328023;328024;328025;328026	328019			8	
NTEYFNQLK	1	Unmodified	1155.556	0.55603811	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				42.41	41.36	2	0.031936	36215	160511_QHF_FH_JSI9i_2	47.823	35.598			2.8846	2.4631	NaN	1	1	Median	2.8846	2.4631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39098000	11010000	28088000	39098000	11010000	28088000	0	0	0	0	0	0	0	0	0	39856	4637	37498	244414	328027	328027			1	
NTEYLFELANSIR	0	Unmodified	1568.7835	0.78347187	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			100.45	100.37	2	0.0012506	88872	160511_QHF_FH_JSI10i_2	61.375	44.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39857	3770	37499	244415	328028	328028			1	
NTFDHPYPTTK	1	Unmodified	1319.6146	0.61461563	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	24.101	23.31	2;3	0.0029416	19341	160511_QHF_FH_JSI11i_2	59.426	37.34			1.0507	1.1239	19.161	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97195	0.98153	NaN	1	0	Median	1.1359	1.287	NaN	1	0	Median	121300000	68354000	52942000	0	0	0	0	0	0	70444000	38150000	32294000	50852000	30204000	20648000	39858	1970	37500	244416;244417;244418	328029;328030	328030			2	
NTFQSGFLSILYSIGSK	1	Unmodified	1860.9622	0.96216452	5713	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	14.1	4.55			1						6	2		2	3	98.486	90.499	2;3	1.9717E-189	50571	160513_QHF_FH_JSI11Kac_6	303.36	271.52			0.74427	0.74129	30.416	6	4	Median	0.71146	0.62208	63.459	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81901	0.77945	7.3026	2	1	Median	0.69233	0.7315	2.0853	2	1	Median	1885800000	1038000000	847790000	635150000	378030000	257120000	0	0	0	619910000	310390000	309520000	630750000	349610000	281140000	39859	5713	37501	244419;244420;244421;244422;244423;244424;244425	328031;328032;328033;328034;328035;328036;328037;328038;328039	328032			9	
NTGIICTIGPASR	0	Unmodified	1358.6976	0.69763375	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.98	6.47	8	8	8		1	3	3	6	8	10	10	12	13	52.939	47.948	2	4.7718E-07	26074	160513_QHF_FH_JSI11Kac_5	140.45	140.45			0.7653	0.8502	103.87	44	40	Median	0.92496	0.7764	75.874	10	10	Median	0.64303	0.75069	95.978	10	9	Median	1.0256	1.0051	94.008	12	11	Median	0.74416	0.80067	137.32	12	10	Median	17972000000	8091800000	9880000000	1956800000	988030000	968720000	4443800000	2171700000	2272100000	6598300000	3393400000	3204900000	4972800000	1538600000	3434200000	39860	1055	37502	244426;244427;244428;244429;244430;244431;244432;244433;244434;244435;244436;244437;244438;244439;244440;244441;244442;244443;244444;244445;244446;244447;244448;244449;244450;244451;244452;244453;244454;244455;244456;244457;244458;244459;244460;244461;244462;244463;244464;244465;244466;244467;244468;244469;244470	328040;328041;328042;328043;328044;328045;328046;328047;328048;328049;328050;328051;328052;328053;328054;328055;328056;328057;328058;328059;328060;328061;328062;328063;328064;328065;328066;328067;328068;328069;328070;328071;328072;328073;328074;328075;328076;328077;328078;328079;328080;328081;328082;328083;328084;328085;328086;328087;328088;328089;328090;328091	328076			52	
NTGTEAPDYLATVDVDPK	1	Unmodified	1904.9004	0.90035212	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	66.795	66.105	2;3	4.2635E-08	59999	160511_QHF_FH_JSI11i_1	122.63	108.6			0.75376	0.77263	70.874	3	1	Median	2.7366	2.2794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61157	0.60037	NaN	1	1	Median	0.75376	0.77263	NaN	1	0	Median	460160000	228630000	231530000	117290000	38904000	78388000	0	0	0	244950000	136570000	108380000	97919000	53151000	44768000	39861	2374	37503	244471;244472;244473	328092;328093;328094	328092			3	
NTGVILANDANAER	0	Unmodified	1456.727	0.72701962	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	3.28	8	5					1			4	2	4	4	35.57	34.859	2	3.4568E-06	31610	160511_QHF_FH_JSI12i_1	130.15	94.195			0.71169	0.59309	92.134	11	11	Median	1.1149	0.95591	79.536	4	4	Median	0.8927	1.0394	126.25	2	2	Median	1.0928	1.1041	107.37	4	4	Median	0.27506	0.28489	NaN	1	1	Median	893610000	433340000	460270000	230960000	93767000	137200000	236230000	120580000	115650000	319550000	161280000	158280000	106860000	57714000	49142000	39862	1580	37504	244474;244475;244476;244477;244478;244479;244480;244481;244482;244483;244484;244485;244486;244487	328095;328096;328097;328098;328099;328100;328101;328102;328103;328104;328105;328106;328107;328108;328109;328110	328099			16	
NTGVSPASRPSPGTPTSPSNLTSGLK	1	Unmodified	2509.2772	0.27724408	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				2	0		2								2				49.403	48.349	3	1.5893E-06	42337	160511_QHF_FH_JSI9i_2	62.237	54.339			0.85378	0.74526	13.412	2	2	Median	0.85378	0.74526	13.412	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36325000	20634000	15691000	36325000	20634000	15691000	0	0	0	0	0	0	0	0	0	39863	2984	37505	244488;244489	328111;328112;328113	328111			3	
NTHATTHNAYDLEVIDIFK	1	Unmodified	2201.0753	0.075296793	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	80.961	71.518	4	0.049369	37828	160513_QHF_FH_JSI12Kac_6	22.646	17.066			0.70893	0.72936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70893	0.72936	NaN	1	0	Median	19130000	11066000	8063300	0	0	0	0	0	0	0	0	0	19130000	11066000	8063300	39864	939	37506	244490	328114	328114			0	
NTHCSSLPHYQK	1	Unmodified	1470.6674	0.66739625	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.768	11.857	3	5.6881E-05	9086	160511_QHF_FH_JSI12i_3	92.151	79.23			3.4376	3.4723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4376	3.4723	NaN	1	1	Median	84377000	19292000	65084000	0	0	0	0	0	0	0	0	0	84377000	19292000	65084000	39865	1556	37507	244491;244492	328115;328116	328116			2	
NTHIVISWMIAQTVTAVAGLTSYPFDTVR	0	Unmodified	3190.6485	0.6485053	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.3	1.75				1					6	1	4	2		105.52	98.06	3	1.6127E-72	56915	160513_QHF_FH_JSI10Kac_6	202.98	192.08			0.90007	0.84331	6.2555	3	0	Median	0.94941	0.79799	NaN	1	0	Median	0.77061	0.90409	NaN	1	0	Median	0.90007	0.84331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	369670000	190620000	179050000	128800000	67956000	60846000	239320000	121760000	117560000	1549900	904400	645540	0	0	0	39866	826	37508	244493;244494;244495;244496;244497;244498;244499	328117;328118;328119;328120;328121;328122;328123;328124	328121			8	
NTHTLLLAGVFR	0	Unmodified	1340.7565	0.75646926	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.67		4	8						12	5	8	6	5	71.956	67.126	2;3	1.5259E-24	35282	160513_QHF_FH_JSI9Kac_6	172.61	143.14			0.83963	0.87215	72.854	23	15	Median	1.0912	0.93869	18.791	4	0	Median	0.71164	0.85432	97.301	8	7	Median	0.88656	0.86337	64.055	6	4	Median	0.77403	0.81243	61.881	5	4	Median	6193100000	2472300000	3720900000	1191900000	525010000	666930000	2982200000	894750000	2087500000	1382700000	719160000	663560000	636250000	333330000	302920000	39867	5708	37509	244500;244501;244502;244503;244504;244505;244506;244507;244508;244509;244510;244511;244512;244513;244514;244515;244516;244517;244518;244519;244520;244521;244522;244523	328125;328126;328127;328128;328129;328130;328131;328132;328133;328134;328135;328136;328137;328138;328139;328140;328141;328142;328143;328144;328145;328146;328147;328148;328149;328150;328151;328152;328153;328154;328155	328144			31	
NTIAIFCETR	0	Unmodified	1223.5969	0.59685707	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15	0								3			1	2		64.447	53.645	2	0.0074521	29154	160513_QHF_FH_JSI11Kac_5	60.434	9.3418			0.33409	0.34325	46.44	2	0	Median	NaN	NaN	NaN	0	0	Median	0.41917	0.47668	NaN	1	0	Median	0.26628	0.24717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2953300	1986600	966690	0	0	0	1974700	1279100	695620	978640	707570	271070	0	0	0	39868	418	37510	244524;244525;244526	328156;328157	328156			2	
NTIDINNFDGK	1	Unmodified	1249.5939	0.59388018	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	48.87	47.929	2	0.0024158	42658	160511_QHF_FH_JSI9i_1	72.478	48.357			0.91357	0.85042	26.437	2	2	Median	0.87052	0.70542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95875	1.0252	NaN	1	1	Median	82965000	47258000	35708000	42671000	24889000	17782000	0	0	0	0	0	0	40295000	22369000	17926000	39869	232	37511	244527;244528	328158;328159	328159			2	
NTIEETGNLAEQAR	0	Unmodified	1544.7431	0.74306362	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	36.216	35.483	2	5.6329E-05	31733	160511_QHF_FH_JSI10i_1	118.61	72.605			0.8231	0.95398	22.308	5	4	Median	0.9266	0.76109	31.945	2	2	Median	0.81659	0.962	NaN	1	0	Median	0.8231	0.80286	NaN	1	1	Median	1.0148	1.0754	NaN	1	1	Median	201380000	96439000	104940000	54787000	30471000	24315000	52536000	23134000	29401000	53424000	25896000	27528000	40629000	16938000	23691000	39870	983	37512	244529;244530;244531;244532;244533	328160;328161;328162;328163;328164;328165;328166	328162			7	
NTIEMQAITALAHLR	0	Unmodified	1680.8981	0.89812447	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	94.262	93.881	3	3.573E-05	82377	160511_QHF_FH_JSI11i_2	94.487	86.31			1.1875	1.0055	57.58	5	3	Median	1.1875	1.0055	NaN	1	0	Median	0.76717	0.9412	75.263	2	2	Median	0.73067	0.72521	NaN	1	0	Median	2.0172	2.2797	NaN	1	1	Median	119380000	64113000	55263000	10249000	3869100	6379600	66272000	38456000	27816000	33400000	18273000	15127000	9456100	3515200	5940900	39871	4559	37513	244534;244535;244536;244537;244538	328167;328168;328169;328170;328171;328172;328173	328170			7	
NTIQLPTQPLNSEEWDK	1	Unmodified	2011.9851	0.9850848	245	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.163	76.559	2	7.5104E-05	69687	160511_QHF_FH_JSI11i_1	90.614	76.805			1.0489	0.92244	18.387	2	2	Median	1.3194	1.0505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83379	0.80998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26787000	9695800	17091000	11526000	5278500	6247200	0	0	0	15261000	4417200	10844000	0	0	0	39872	245	37514	244539;244540;244541;244542	328174;328175;328176;328177	328174			4	
NTISLLVAGLK	1	Unmodified	1127.6914	0.69140938	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	84.194	83.37	2	8.2525E-05	73427	160511_QHF_FH_JSI11i_2	90.108	79.398			1.6426	1.9169	33.219	5	4	Median	2.3165	1.9573	NaN	1	1	Median	1.1867	1.3921	50.015	2	2	Median	1.1635	1.1924	NaN	1	0	Median	1.7307	1.9169	NaN	1	1	Median	315430000	142150000	173280000	49680000	17104000	32576000	89526000	45738000	43788000	97334000	48527000	48807000	78889000	30782000	48107000	39873	2517	37515	244543;244544;244545;244546;244547	328178;328179;328180;328181;328182	328181			5	
NTISLLVAGLKK	2	Unmodified	1255.7864	0.7863724	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.69			11						2	5	3	3	2	73.912	71.205	2;3	2.6285E-05	62131	160511_QHF_FH_JSI12i_3	117.52	101.19			0.42041	0.3956	61.695	9	9	Median	0.42638	0.35233	81.59	3	3	Median	0.39358	0.4622	62.381	2	2	Median	0.4165	0.39746	0.66338	2	2	Median	0.6745	0.68197	92.584	2	2	Median	554920000	312060000	242860000	170050000	89498000	80547000	81410000	47763000	33647000	93187000	57815000	35371000	210270000	116980000	93293000	39874	2517	37516	244548;244549;244550;244551;244552;244553;244554;244555;244556;244557;244558;244559;244560	328183;328184;328185;328186;328187;328188;328189;328190;328191;328192;328193;328194;328195;328196	328196			14	
NTITVPASFMLR	0	Unmodified	1348.7173	0.71730656	2873	Q58WW2	DCAF6	DDB1- and CUL4-associated factor 6	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			80.111	79.406	2	0.01482	70628	160511_QHF_FH_JSI10i_2	52.247	22.492			0.53543	0.63161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53543	0.63161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17494000	12010000	5483500	0	0	0	17494000	12010000	5483500	0	0	0	0	0	0	39875	2873	37517	244561	328197	328197			1	
NTIVTSYNR	0	Unmodified	1066.5407	0.5407224	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.45	2	4					3	4		2	4	4	3	25.382	20.223	2	5.2576E-06	17093	160511_QHF_FH_JSI12i_2	116.37	91.477			0.96169	1.0627	17.084	13	2	Median	1.3311	1.1485	18.739	2	0	Median	0.93342	1.1319	18.254	4	1	Median	1.09	1.0989	21.203	4	1	Median	0.90196	1.0166	10.216	3	0	Median	1215200000	600390000	614770000	197370000	78872000	118500000	325730000	166750000	158970000	405690000	192100000	213590000	286370000	162660000	123700000	39876	4315	37518	244562;244563;244564;244565;244566;244567;244568;244569;244570;244571;244572;244573;244574	328198;328199;328200;328201;328202;328203;328204;328205;328206;328207;328208;328209;328210;328211;328212;328213;328214;328215;328216;328217;328218;328219;328220	328200			23	
NTKSEIIELNRMIQR	1	Oxidation (M)	1859.9887	0.98873039	54	CON__P12035;P12035	KRT3	Keratin, type II cytoskeletal 3	yes	no	0	0	1	2	By MS/MS		By MS/MS		16	0									2	1		1		85.131	76.165	2	0.017827	41857	160513_QHF_FH_JSI9Kac_6	67.08	27.163		+	0.12012	0.10849	78.17	2	2	Median	0.073671	0.062422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19585	0.18856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	171460000	158380000	13071000	124980000	115020000	9957400	0	0	0	46480000	43367000	3113400	0	0	0	39877	54	37519	244575;244576	328221;328222	328222		29	2	
NTKYPIQR	1	Acetyl (K)	1060.5665	0.56654322	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.068	22.888	2	0.026417	14471	160513_QHF_FH_JSI11Kac_4	58.815	38.19			0.21441	0.20966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21441	0.20966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9396600	7755000	1641600	0	0	0	0	0	0	9396600	7755000	1641600	0	0	0	39878	2517	37520	244577	328223	328223	2509		1	
NTLETSSLNFK	1	Unmodified	1252.6299	0.62993134	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		58.029	47.044	2	0.036115	26959	160513_QHF_FH_JSI11Kac_4	42.001	30.85			1.2528	1.2233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2528	1.2233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5572400	2381000	3191400	0	0	0	0	0	0	5572400	2381000	3191400	0	0	0	39879	2501	37521	244578	328224	328224			1	
NTLFNLSNFLDK	1	Unmodified	1424.73	0.72997974	2425	Q13492;O60641	PICALM;SNAP91	Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		5								1	2	1	1	101.07	100.95	2	9.5569E-32	89390	160511_QHF_FH_JSI10i_2	194.17	147.7			0.74068	0.90669	19.155	5	0	Median	1.0114	0.8541	NaN	1	0	Median	0.73268	0.90847	0.27728	2	0	Median	1.2763	1.306	NaN	1	0	Median	0.70956	0.79731	NaN	1	0	Median	651590000	341510000	310080000	90502000	43785000	46717000	172940000	102400000	70537000	228230000	101630000	126590000	159920000	93687000	66232000	39880	2425	37522	244579;244580;244581;244582;244583	328225;328226;328227;328228;328229;328230	328230			6	
NTLIQFEDFGNHNAFR	0	Unmodified	1921.9071	0.90710925	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										1	3	75.626	74.365	2;3	1.4945E-06	64197	160511_QHF_FH_JSI12i_2	103.61	98.18			1.1027	1.2604	11.546	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1027	1.2604	11.546	2	1	Median	130900000	63926000	66975000	0	0	0	0	0	0	0	0	0	130900000	63926000	66975000	39881	1225	37523	244584;244585;244586;244587	328231;328232;328233;328234	328231			4	
NTLLIAGLQAR	0	Unmodified	1168.6928	0.69280637	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.45		8					2	6	5	5	7	5	4	69.666	63.24	2	8.7405E-10	34226	160513_QHF_FH_JSI11Kac_6	130.41	101.69			0.83178	0.88783	97.337	20	18	Median	0.5807	0.49398	99.793	5	5	Median	0.85384	1.0311	86.03	7	7	Median	0.71191	0.69055	134.97	4	3	Median	1.1325	1.2425	109.72	4	3	Median	2127000000	1088100000	1038900000	356230000	185700000	170530000	603180000	382410000	220770000	673660000	326320000	347340000	493980000	193710000	300270000	39882	1486	37524	244588;244589;244590;244591;244592;244593;244594;244595;244596;244597;244598;244599;244600;244601;244602;244603;244604;244605;244606;244607;244608	328235;328236;328237;328238;328239;328240;328241;328242;328243;328244;328245;328246;328247;328248;328249;328250;328251;328252;328253;328254;328255;328256	328240			22	
NTLLPLYLYIQSWR	0	Unmodified	1778.9719	0.97194134	2809	Q330K2	NDUFAF6	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.372	89.809	2	2.5143E-16	50307	160513_QHF_FH_JSI11Kac_6	134.98	118.03			1.0926	1.1841	8.1057	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92946	1.1181	NaN	1	0	Median	1.2843	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	240550000	122500000	118060000	0	0	0	148650000	76668000	71984000	91901000	45830000	46072000	0	0	0	39883	2809	37525	244609;244610;244611	328257;328258;328259	328257			3	
NTLPDMNTSEMEK	1	Unmodified	1508.6487	0.64869423	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.639	43.995	2	4.0391E-05	39985	160511_QHF_FH_JSI12i_1	117.09	104.48			0.39466	0.40428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39466	0.40428	NaN	1	1	Median	33652000	20444000	13208000	0	0	0	0	0	0	0	0	0	33652000	20444000	13208000	39884	413	37526	244612	328260;328261	328261			2	
NTLPTKETIEQEK	2	Acetyl (K)	1571.8043	0.80426689	2064	P63313;CON__P21752	TMSB10	Thymosin beta-10	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	56.602	47.242	2	6.1697E-05	25387	160513_QHF_FH_JSI11Kac_3	93.345	69.002		+	1.0433	1.1663	69.595	4	0	Median	NaN	NaN	NaN	0	0	Median	1.9199	2.2054	15.888	2	0	Median	0.63497	0.647	NaN	1	0	Median	0.653	0.69015	NaN	1	0	Median	22653000	12346000	10307000	0	0	0	5346100	1828400	3517700	6120300	3770400	2350000	11186000	6746900	4439400	39885	2064	37527	244613;244614;244615;244616;244617	328262;328263;328264;328265;328266;328267;328268	328263	2135;2137		7	
NTLQLHR	0	Unmodified	880.4879	0.48789897	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.62		8	5						8	4	5	6	6	14.272	11.138	2;3	0.0014072	6422	160513_QHF_FH_JSI12Kac_6	108.24	63.627			0.97571	0.99177	19.835	21	1	Median	1.0966	0.93463	14.233	4	0	Median	0.97571	1.1779	20.826	5	0	Median	0.90006	0.88677	12.396	6	1	Median	0.96012	1.0512	17.154	6	0	Median	12451000000	6132200000	6318800000	1765100000	908790000	856270000	2921600000	1422000000	1499600000	4711300000	2368200000	2343100000	3053000000	1433200000	1619900000	39886	1951	37528	244618;244619;244620;244621;244622;244623;244624;244625;244626;244627;244628;244629;244630;244631;244632;244633;244634;244635;244636;244637;244638	328269;328270;328271;328272;328273;328274;328275;328276;328277;328278;328279;328280;328281;328282;328283;328284;328285;328286;328287;328288;328289;328290;328291;328292;328293;328294;328295;328296;328297;328298;328299;328300;328301;328302	328300			34	
NTLTNIAMRPGLEGYALPR	0	Unmodified	2086.0993	0.099343474	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							3	2	1	1	76.765	75.808	3	1.7413E-09	66698	160511_QHF_FH_JSI9i_2	92.492	76.967			0.99949	0.95918	9.5374	5	2	Median	1.2376	1.0302	14.048	2	1	Median	0.73891	0.91911	NaN	1	0	Median	0.93175	0.95918	NaN	1	0	Median	0.99949	1.0809	NaN	1	1	Median	768660000	406990000	361660000	321990000	153070000	168920000	215970000	131910000	84057000	185520000	99001000	86521000	45181000	23015000	22166000	39887	1410	37529	244639;244640;244641;244642;244643;244644;244645	328303;328304;328305;328306;328307;328308;328309;328310;328311;328312	328307			10	
NTLTNIAMRPGLEGYALPR	0	Oxidation (M)	2102.0943	0.094258096	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			69.9	68.422	3	0.004553	56177	160511_QHF_FH_JSI9i_3	43.534	34.488			1.1034	1.0688	16.007	2	0	Median	1.4516	1.1969	NaN	1	0	Median	0.83865	0.95444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70319000	35741000	34577000	41606000	17390000	24217000	28712000	18352000	10361000	0	0	0	0	0	0	39888	1410	37529	244646;244647	328313;328314;328315	328315		1059	3	
NTLTQTTENLR	0	Unmodified	1289.6575	0.65754307	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	33.162	29.944	2	3.6238E-18	26756	160511_QHF_FH_JSI10i_1	162.8	143.82			0.92229	0.88886	9.9646	11	3	Median	1.0851	0.89945	12.216	2	1	Median	0.81365	0.97384	12.909	3	0	Plateau	0.96388	0.94675	12.014	3	1	Median	0.78486	0.93219	10.162	3	1	Plateau	1116300000	595180000	521120000	181100000	96077000	85026000	288740000	163520000	125230000	339330000	181950000	157380000	307120000	153630000	153480000	39889	1085	37530	244648;244649;244650;244651;244652;244653;244654;244655;244656;244657;244658	328316;328317;328318;328319;328320;328321;328322;328323;328324;328325;328326;328327;328328;328329;328330;328331;328332	328323			17	
NTMAYIGFVEEK	1	Unmodified	1400.6646	0.66460229	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	70.466	69.612	2	4.2117E-05	61893	160511_QHF_FH_JSI10i_2	111.63	103.41			0.99588	0.98011	66.764	6	6	Median	1.6392	1.4287	NaN	1	1	Median	0.46194	0.54587	29.476	2	2	Median	1.6988	1.7005	NaN	1	1	Median	1.174	1.2917	93.521	2	2	Median	311280000	155540000	155730000	33652000	13308000	20344000	84820000	52107000	32714000	73638000	32540000	41097000	119170000	57587000	61579000	39890	4108	37531	244659;244660;244661;244662;244663;244664	328333;328334;328335;328336;328337;328338	328338			6	
NTNAAEESLPEIQK	1	Unmodified	1542.7526	0.75256567	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	46.244	43.145	2	1.5773E-21	39056	160511_QHF_FH_JSI12i_1	177.16	163.73			0.97563	0.99193	22.85	7	3	Median	0.97563	0.79684	NaN	1	0	Median	0.8578	0.99193	NaN	1	0	Median	1.3852	1.3167	26.111	3	2	Median	0.86804	0.9044	21.86	2	1	Median	775770000	416320000	359460000	130320000	63405000	66911000	164650000	97244000	67404000	312170000	166940000	145240000	168640000	88731000	79904000	39891	4989	37532	244665;244666;244667;244668;244669;244670;244671	328339;328340;328341;328342;328343;328344;328345;328346;328347;328348;328349	328341			11	
NTNAGAPPGTAYQSPLPLSR	0	Unmodified	2011.0123	0.012302606	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.987	57.334	2	1.0402E-10	52191	160511_QHF_FH_JSI12i_1	151.8	113.81			0.97971	0.97382	3.6967	4	0	Median	1.2356	1.0109	NaN	1	0	Median	0.78756	0.94527	NaN	1	0	Median	0.97567	0.94441	NaN	1	0	Median	0.98376	1.0032	NaN	1	0	Median	313880000	161490000	152400000	72791000	32567000	40224000	78511000	41841000	36670000	78512000	40394000	38118000	84070000	46685000	37385000	39892	2185	37533	244672;244673;244674;244675	328350;328351;328352;328353;328354;328355;328356;328357;328358;328359;328360;328361;328362	328355			13	
NTNDANSCQIIIPQNQVNR	0	Unmodified	2198.0498	0.049827099	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.78	46.102	2	1.7688E-209	41707	160511_QHF_FH_JSI11i_1	324.94	303.64			1.0652	1.0664	31.5	4	0	Median	1.6986	1.3678	NaN	1	0	Median	0.69936	0.8314	NaN	1	0	Median	0.82594	0.78806	NaN	1	0	Median	1.3737	1.4208	NaN	1	0	Median	253250000	126290000	126960000	40742000	15207000	25535000	59815000	31874000	27941000	72614000	42107000	30507000	80083000	37104000	42980000	39893	1702;1368	37534	244676;244677;244678;244679	328363;328364;328365;328366;328367;328368;328369	328364			7	
NTNDANSCQIIIPQNQVNRK	1	Unmodified	2326.1448	0.14479012	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.28	3	4	2				3			1	3	4	4	41.433	38.398	3	2.6957E-10	32818	160511_QHF_FH_JSI11i_2	119.23	111.08			0.98981	1.0529	23.658	12	1	Median	1.2544	1.0505	NaN	1	0	Median	1.0123	1.1981	11.1	3	0	Plateau	0.87224	0.85734	11.432	4	0	Median	1.0446	1.0907	21.718	4	1	Median	772420000	364540000	407880000	73681000	30647000	43034000	193280000	91913000	101370000	275180000	129150000	146030000	230280000	112830000	117440000	39894	1702;1368	37535	244680;244681;244682;244683;244684;244685;244686;244687;244688;244689;244690;244691	328370;328371;328372;328373;328374;328375;328376;328377;328378;328379;328380;328381;328382;328383;328384;328385;328386;328387;328388;328389	328383			20	
NTNEEDDEVREAMTR	0	Unmodified	1807.7643	0.76426934	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	30.397	29.715	3	3.8447E-05	26808	160511_QHF_FH_JSI12i_1	87.932	86.566			1.1375	1.19	8.4895	7	1	Median	1.3648	1.1509	NaN	1	1	Median	0.99885	1.2191	6.2159	2	0	Median	1.115	1.1278	7.5901	2	0	Median	1.2578	1.3412	0.65574	2	0	Median	437730000	220260000	217470000	26765000	8676500	18088000	157960000	80557000	77407000	107590000	59190000	48398000	145420000	71839000	73578000	39895	1695	37536	244692;244693;244694;244695;244696;244697;244698;244699	328390;328391;328392;328393;328394;328395;328396;328397;328398;328399;328400	328392			11	
NTNIAQK	1	Unmodified	787.41882	0.41881635	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	4.74	7		1			2				3	2	3	2	6.6155	6.2828	2	0.0013991	2951	160513_QHF_FH_JSI11Kac_3	86.086	43.086			0.20591	0.20037	162	7	7	Median	0.92984	0.75027	229.66	2	2	Median	0.51473	0.59613	233.39	2	2	Median	0.76671	0.74729	186.15	2	2	Median	0.17358	0.18571	NaN	1	1	Median	2284700000	1260600000	1024200000	548640000	242550000	306100000	664490000	385240000	279250000	706470000	363970000	342500000	365130000	268800000	96329000	39896	1085	37537	244700;244701;244702;244703;244704;244705;244706;244707;244708;244709	328401;328402;328403;328404;328405;328406;328407;328408;328409;328410	328404			10	
NTNPNFVR	0	Unmodified	960.47773	0.47772821	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.77	6.29	1	4	1				3	4		4	3	3	3	21.575	16.395	2	0.00015992	9544	160513_QHF_FH_JSI12Kac_5	120.49	73.421			1.0443	1.056	14.092	13	0	Median	1.2759	1.0674	9.5183	4	0	Median	0.81924	0.99241	25.012	3	0	Median	1.0443	1.0284	17.707	3	0	Median	0.9805	1.0838	6.1508	3	0	Median	2607000000	1237300000	1369700000	659380000	271400000	387980000	467270000	251580000	215690000	714130000	338230000	375900000	766200000	376110000	390090000	39897	1436;1437	37538	244710;244711;244712;244713;244714;244715;244716;244717;244718;244719;244720;244721;244722	328411;328412;328413;328414;328415;328416;328417;328418;328419;328420;328421;328422;328423;328424;328425;328426;328427;328428;328429;328430;328431;328432;328433	328429			23	
NTNTINNGTQQQAQSMTTTIKPGDDWKK	3	Unmodified	3119.4942	0.4941895	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							2	2	1		48.491	47.685	4	5.3219E-14	41934	160511_QHF_FH_JSI10i_2	101.59	95.874			0.59488	0.94624	54.496	4	4	Linear	0.97455	0.85119	69.881	2	2	Median	0.81044	0.99193	61.579	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	300110000	175060000	125050000	119660000	69934000	49724000	155620000	80294000	75323000	24832000	24832000	0	0	0	0	39898	1271	37539	244723;244724;244725;244726;244727	328434;328435;328436;328437;328438;328439;328440	328438			7	
NTNVEDVLNAR	0	Unmodified	1243.6157	0.61567826	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	1	3	45.117	44.63	2	2.9848E-07	40332	160511_QHF_FH_JSI11i_1	120.22	94.487			1.5087	1.4926	32.888	3	2	Median	NaN	NaN	NaN	0	0	Median	0.87631	1.0153	NaN	1	1	Median	1.5087	1.4926	NaN	1	0	Median	1.8889	1.9534	NaN	1	1	Median	308960000	127020000	181940000	0	0	0	101020000	54455000	46567000	112500000	36639000	75863000	95433000	35921000	59512000	39899	4176	37540	244728;244729;244730;244731;244732	328441;328442;328443;328444;328445;328446	328442			6	
NTPAFFAER	0	Unmodified	1051.5087	0.50869399	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	44.79	43.816	2	0.0025867	37280	160511_QHF_FH_JSI12i_2	64.04	37.438			1.004	1.1264	11.596	4	0	Median	1.5891	1.3688	NaN	1	0	Median	0.91358	1.1382	NaN	1	0	Median	1.078	1.1146	NaN	1	0	Median	0.93511	1.0445	NaN	1	0	Median	1758200000	926730000	831470000	360180000	155700000	204480000	385750000	223160000	162590000	652580000	343400000	309180000	359690000	204470000	155220000	39900	1723	37541	244733;244734;244735;244736	328447;328448;328449	328447			3	
NTPAFLAER	0	Unmodified	1017.5243	0.52434406	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	40.738	39.806	2	0.00074526	34084	160511_QHF_FH_JSI11i_2	74.92	41.369			1.4072	1.3953	14.757	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0048	1.246	NaN	1	1	Median	1.4072	1.3953	NaN	1	0	Median	1.5439	1.6696	NaN	1	1	Median	611720000	228970000	382750000	0	0	0	166950000	66170000	100780000	212670000	97965000	114710000	232100000	64832000	167270000	39901	1018	37542	244737;244738;244739	328450;328451;328452	328451			3	
NTPENLHEMAK	1	Unmodified	1282.5976	0.59758535	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	3	1	18.37	17.84	2;3	0.00011946	14469	160511_QHF_FH_JSI11i_2	96.89	75.988			0.89634	0.93499	77.818	5	4	Median	4.4091	3.8133	NaN	1	1	Median	1.7034	2.1086	NaN	1	1	Median	0.82215	0.82916	27.177	3	2	Median	NaN	NaN	NaN	0	0	Median	307820000	131890000	175920000	42934000	6917400	36017000	79327000	28466000	50861000	185560000	96510000	89046000	0	0	0	39902	2858	37543	244740;244741;244742;244743;244744;244745;244746	328453;328454;328455;328456;328457;328458;328459	328456			7	
NTPENLHEMAKHNLLLHLK	2	Acetyl (K)	2293.2001	0.20012015	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.259	64.904	4	4.7948E-06	35269	160513_QHF_FH_JSI11Kac_6	78.021	69.202			0.66319	0.63322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66319	0.63322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27628000	16513000	11115000	0	0	0	0	0	0	27628000	16513000	11115000	0	0	0	39903	2858	37544	244747	328460	328460	2700		1	
NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGK	1	Unmodified	3824.9236	0.92361753	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			98.706	91.279	4	2.1789E-107	51600	160513_QHF_FH_JSI9Kac_6	217.58	203.53			0.87575	0.88363	49.647	2	1	Median	1.4755	1.2553	NaN	1	0	Median	0.51977	0.62203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	928520000	545550000	382970000	402790000	158900000	243890000	525730000	386660000	139080000	0	0	0	0	0	0	39904	2283	37545	244748;244749	328461;328462;328463	328462			3	
NTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGK	2	Oxidation (M)	3853.9753	0.97531874	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	97.644	88.326	4	5.6044E-30	48347	160513_QHF_FH_JSI12Kac_6	126.67	117.53			1.0666	1.0107	19.994	3	0	Plateau	0.84821	0.74094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0666	1.0107	NaN	1	0	Median	1.0148	1.0765	NaN	1	0	Median	1091000000	519900000	571140000	306030000	164720000	141300000	0	0	0	423880000	180670000	243210000	361130000	174510000	186620000	39905	2741	37546	244750;244751;244752	328464;328465;328466;328467;328468	328468		2121	5	
NTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGK	2	Unmodified	3837.9804	0.98040412	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	3	3	5	98.834	90.261	3;4;5	2.7305E-185	51530	160513_QHF_FH_JSI9Kac_6	281.45	272.06			0.99114	0.93461	58.661	13	4	Median	1.0766	0.92512	104.76	3	0	Median	1.1326	1.292	7.6494	3	1	Plateau	0.90502	0.86776	6.6273	3	0	Median	1.4624	1.5293	62.991	4	3	Linear	20823000000	8347000000	12476000000	4672900000	1637000000	3035800000	9015600000	3795200000	5220400000	3838200000	1608700000	2229500000	3296300000	1306000000	1990300000	39906	2741	37546	244753;244754;244755;244756;244757;244758;244759;244760;244761;244762;244763;244764;244765;244766	328469;328470;328471;328472;328473;328474;328475;328476;328477;328478;328479;328480;328481;328482;328483;328484;328485;328486;328487	328476			19	
NTPSEPIHCIVWAK	1	Unmodified	1650.8188	0.81881152	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	54.963	54.028	3	0.0013013	47615	160511_QHF_FH_JSI10i_2	41.967	36.911			0.69875	0.69963	23.422	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70417	0.84665	NaN	1	0	Median	0.69875	0.69963	NaN	1	0	Median	0.9903	1.1148	NaN	1	0	Median	176230000	100810000	75418000	0	0	0	52750000	33939000	18811000	73371000	42413000	30958000	50106000	24457000	25649000	39907	5254	37547	244767;244768;244769	328488;328489	328489			1	
NTPSFLIACNK	1	Unmodified	1263.6282	0.6281572	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	54.008	52.8	2	0.00017519	45309	160511_QHF_FH_JSI12i_2	82.287	46.992			0.92524	0.88931	32.277	2	1	Median	0.82164	0.70783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0419	1.1173	NaN	1	0	Median	116260000	53005000	63256000	34207000	20851000	13357000	0	0	0	0	0	0	82053000	32154000	49899000	39908	5669	37548	244770;244771	328490;328491	328490			2	
NTPSISEEQIK	1	Unmodified	1244.6248	0.62484596	4774	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.689	32.087	2	0.00088344	28602	160511_QHF_FH_JSI10i_1	67.726	41.683			0.81374	0.80963	31.182	4	1	Median	1.2591	1.0269	NaN	1	1	Median	0.4597	0.54475	NaN	1	0	Median	0.69176	0.65925	NaN	1	0	Median	0.95723	0.99431	NaN	1	0	Median	423520000	228290000	195230000	101680000	46062000	55620000	94812000	63915000	30897000	107900000	59851000	48053000	119120000	58459000	60663000	39909	4774	37549	244772;244773;244774;244775	328492;328493;328494;328495;328496	328495			5	
NTPSPDVTLGTNPGTEDIQFPIQK	1	Unmodified	2568.2708	0.27076172	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		83.746	83.295	3	3.674E-09	75913	160511_QHF_FH_JSI11i_1	80.683	73.322			0.85363	0.98921	12.156	3	0	Median	1.2148	0.98921	NaN	1	0	Median	0.85363	1.0119	NaN	1	0	Median	0.83901	0.81127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116160000	54273000	61882000	26830000	12856000	13973000	55682000	23323000	32359000	33644000	18094000	15550000	0	0	0	39910	3436	37550	244776;244777;244778	328497;328498;328499;328500;328501	328497			4	
NTPSPFIETFTEDDEASR	0	Unmodified	2054.9069	0.90689406	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	73.49	72.987	2	2.1452E-11	66423	160511_QHF_FH_JSI12i_1	146	132.8			0.85995	0.95212	17.832	4	0	Median	1.4944	1.1932	NaN	1	0	Median	0.79425	0.94595	NaN	1	0	Median	0.80398	0.77121	NaN	1	0	Median	0.91982	0.95833	NaN	1	0	Median	155720000	82876000	72845000	40162000	13461000	26702000	43750000	25302000	18448000	33135000	22265000	10870000	38673000	21847000	16826000	39911	1622	37551	244779;244780;244781;244782;244783	328502;328503;328504;328505;328506;328507;328508;328509;328510	328504			9	
NTPVYVSSPTWENHNAVFSAAGFK	1	Unmodified	2622.2503	0.25030105	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	79.653	76.203	3	5.7123E-35	69475	160511_QHF_FH_JSI11i_2	180.66	173.78			0.94817	0.96578	16.039	11	0	Median	1.2762	1.1009	16.681	2	0	Median	0.79439	0.97704	21.686	3	0	Plateau	0.94817	0.96578	5.6351	3	0	Median	0.8667	0.91312	2.3937	3	0	Median	1661000000	817460000	843510000	266170000	121600000	144570000	367690000	208880000	158800000	598320000	285180000	313140000	428790000	201800000	227000000	39912	1111	37552	244784;244785;244786;244787;244788;244789;244790;244791;244792;244793;244794	328511;328512;328513;328514;328515;328516;328517;328518;328519;328520;328521;328522;328523;328524;328525;328526;328527;328528;328529;328530;328531;328532;328533;328534;328535;328536;328537;328538	328525			28	
NTPWPEAEAIAPQVGNDAVFLILYK	1	Unmodified	2755.4221	0.4221174	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	7.6	6.86		3							2	1	1	1	2	100.61	96.778	3	1.3677E-18	48537	160513_QHF_FH_JSI12Kac_6	106.12	98.928			0.89723	0.86166	25.996	5	0	Median	1.0223	0.85649	NaN	1	0	Median	0.69248	0.82628	NaN	1	0	Median	0.89723	0.86166	NaN	1	0	Median	1.1237	1.2248	32.719	2	0	Median	472790000	247610000	225180000	73585000	40099000	33486000	64364000	37633000	26731000	123010000	66975000	56037000	211820000	102900000	108920000	39913	5494	37553	244795;244796;244797;244798;244799	328539;328540;328541	328541			3	
NTPYQAPVRR	0	Unmodified	1200.6364	0.63635412	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			15.062	14.13	3	0.012089	11307	160511_QHF_FH_JSI10i_3	35.652	25.42			0.83751	0.98646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83751	0.98646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26687000	11970000	14717000	0	0	0	26687000	11970000	14717000	0	0	0	0	0	0	39914	1684	37554	244800	328542	328542			1	
NTQSNEDLK	1	Unmodified	1047.4833	0.4832671	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			6.4476	6.0254	2	8.193E-05	3757	160511_QHF_FH_JSI9i_1	113.71	38.597			1.007	0.99023	56.846	2	2	Median	1.772	1.4801	NaN	1	1	Median	0.57223	0.66247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151160000	80200000	70959000	66739000	24871000	41868000	84420000	55329000	29091000	0	0	0	0	0	0	39915	2270	37555	244801;244802	328543;328544	328544			2	
NTRNEISEMNR	0	Unmodified	1362.631	0.63101075	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			12.97	12.342	3	0.0012498	10030	160511_QHF_FH_JSI9i_2	55.261	10.645		+	1.3903	1.4376	46.939	2	1	Median	2.3284	2.0035	NaN	1	1	Median	0.83018	1.0316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213000000	96781000	116210000	110380000	47397000	62986000	102610000	49385000	53227000	0	0	0	0	0	0	39916	53;71	37556	244803;244804	328545;328546;328547	328545			3	
NTSAAIQAYR	0	Unmodified	1093.5516	0.55162144	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	22.314	21.139	2	0.0041976	17584	160511_QHF_FH_JSI12i_2	57.96	42.298			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39917	5350	37557	244805;244806	328548;328549	328549			2	
NTSDVISAAK	1	Unmodified	1004.5138	0.51383895	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	22.623	20.632	2	0.002464	12627	160513_QHF_FH_JSI11Kac_3	79.148	39.844			1.8103	1.9312	107.57	5	5	Median	4.882	4.0791	NaN	1	1	Median	3.4233	4.0904	NaN	1	1	Median	0.69637	0.69298	121.08	2	2	Median	1.8103	1.9312	NaN	1	1	Median	857240000	360510000	496720000	208390000	62386000	146000000	130360000	42387000	87968000	232180000	90585000	141590000	286320000	165160000	121160000	39918	1421	37558	244807;244808;244809;244810;244811	328550;328551;328552;328553;328554	328552			5	
NTSEQDQPMGGWEMIR	0	Unmodified	1877.8036	0.80363174	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	2	1	64.725	64.023	2	2.4578E-10	58151	160511_QHF_FH_JSI12i_1	148.52	142.55			0.91678	0.95005	11.757	5	2	Median	1.0468	0.87991	17.041	2	2	Median	0.91328	1.0724	NaN	1	0	Median	0.9793	0.95005	NaN	1	0	Median	0.90883	0.93331	NaN	1	0	Median	204980000	99795000	105190000	67139000	27673000	39466000	47084000	22299000	24785000	59652000	33159000	26494000	31105000	16664000	14441000	39919	1180	37559	244812;244813;244814;244815;244816;244817	328555;328556;328557;328558;328559;328560;328561;328562;328563	328557			9	
NTSEQDQPMGGWEMIRK	1	Unmodified	2005.8986	0.89859476	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	53.782	53.051	2;3	8.7609E-06	46918	160511_QHF_FH_JSI11i_3	88.385	84.781			1.0946	1.084	15.588	6	0	Median	1.2194	1.0557	NaN	1	0	Median	0.88605	1.113	NaN	1	0	Median	1.1097	1.1034	14.182	2	0	Median	0.95845	1.0024	29.924	2	0	Median	1298900000	643490000	655430000	190280000	74458000	115820000	311120000	173100000	138020000	464210000	216450000	247760000	333300000	179480000	153830000	39920	1180	37560	244818;244819;244820;244821;244822;244823;244824	328564;328565;328566;328567;328568;328569;328570;328571;328572;328573;328574	328565			11	
NTSLPPLWSPEAER	0	Unmodified	1595.7944	0.79437091	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	70.877	70.097	2	6.4793E-05	61707	160511_QHF_FH_JSI9i_2	117.23	92.378			1.0665	1.142	21.907	7	1	Median	1.7967	1.5401	32.041	2	0	Median	0.87397	1.0622	NaN	1	0	Median	1.0999	1.0772	8.2504	2	0	Median	1.0542	1.1072	5.3219	2	1	Median	286260000	135000000	151260000	59263000	21492000	37770000	37392000	21427000	15965000	119360000	55510000	63852000	70244000	36573000	33671000	39921	1684	37561	244825;244826;244827;244828;244829;244830;244831	328575;328576;328577;328578;328579;328580;328581;328582;328583;328584	328580			9	
NTSQTAAITTK	1	Unmodified	1134.5881	0.58806652	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.66	2					1				1	1	1		14.869	12.014	2	0.0028172	9978	160511_QHF_FH_JSI9i_1	70.942	59.431			2.9206	2.8202	105.85	3	3	Median	5.3148	4.5371	NaN	1	1	Median	0.52678	0.59934	NaN	1	1	Median	2.9206	2.8202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59660000	26424000	33236000	28246000	4118300	24127000	29801000	21964000	7836900	1613500	341840	1271700	0	0	0	39922	3059	37562	244832;244833;244834	328585;328586;328587	328587			3	
NTTAAEEAR	0	Unmodified	961.44649	0.44648767	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	2	3	3	5.5602	2.261	2	4.2063E-07	2941	160511_QHF_FH_JSI11i_1	139.02	110.6			1.1393	1.1302	22.018	7	0	Median	1.714	1.3578	NaN	1	0	Median	1.0015	1.1746	43.324	2	0	Median	1.1896	1.1633	4.0802	2	0	Median	0.88304	0.95346	7.3812	2	0	Median	4722600000	2082700000	2639900000	1002600000	409480000	593110000	1294800000	607290000	687560000	1193900000	538200000	655670000	1231300000	527730000	703540000	39923	127	37563	244835;244836;244837;244838;244839;244840;244841;244842;244843	328588;328589;328590;328591;328592;328593;328594;328595;328596;328597;328598	328588			11	
NTTADKLAIK	2	Acetyl (K)	1115.6186	0.61863837	1475	P38432	COIL	Coilin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	47.36	38.257	2	0.0041055	20473	160513_QHF_FH_JSI10Kac_3	72.607	32.504			0.91784	1.0353	2.121	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86481	1.0199	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97411	1.051	NaN	1	0	Median	7631300	4183300	3448000	0	0	0	3389800	1756100	1633700	0	0	0	4241500	2427200	1814300	39924	1475	37564	244844;244845;244846	328599;328600;328601;328602	328602	1463		4	
NTTGVTEEALK	1	Unmodified	1161.5877	0.58773217	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	25.444	25.148	2	0.0015127	21990	160511_QHF_FH_JSI11i_1	67.726	31.032			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39925	2470	37565	244847;244848;244849;244850	328603;328604;328605;328606	328603			4	
NTTHGSDSVVSASR	0	Unmodified	1416.6593	0.65933399	522	O75414	NME6	Nucleoside diphosphate kinase 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.3084	8.1113	2	0.0016809	5740	160511_QHF_FH_JSI11i_2	59.57	47.042			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39926	522	37566	244851	328607	328607			1	
NTTIPTK	1	Unmodified	773.42832	0.42831841	1480;985;1827	P38646;P11142;P54652	HSPA9;HSPA8;HSPA2	Stress-70 protein, mitochondrial;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	1	2	12.962	11.341	2	0.039619	7039	160513_QHF_FH_JSI12Kac_4	57.177	14.054			0.78046	0.83508	34.595	6	0	Median	1.1066	0.92757	NaN	1	0	Median	0.71949	0.87808	17.005	2	0	Median	0.76415	0.74466	NaN	1	0	Median	0.54408	0.58753	59.627	2	0	Median	13569000000	6279600000	7289100000	3170000000	1380300000	1789700000	3388700000	1707300000	1681400000	3366500000	1599400000	1767100000	3643500000	1592600000	2050900000	39927	1480;985;1827	37567	244852;244853;244854;244855;244856;244857	328608;328609;328610;328611	328610			4	
NTTIPTKK	2	Unmodified	901.52328	0.52328142	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	2	3	2	8.3966	8.1056	2	0.0024321	5752	160511_QHF_FH_JSI11i_3	80.438	61.656			1.0923	1.1705	28.853	9	1	Median	1.9354	1.6415	28.08	2	1	Median	0.80732	0.98035	2.0298	2	0	Median	1.1983	1.1705	27.782	3	0	Median	0.94276	1.0086	24.899	2	0	Median	2355400000	1115300000	1240000000	345870000	104190000	241680000	455450000	253170000	202290000	739970000	312660000	427310000	814070000	445290000	368780000	39928	1480	37568	244858;244859;244860;244861;244862;244863;244864;244865;244866	328612;328613;328614;328615;328616;328617;328618;328619;328620;328621	328612			10	
NTTQNTGYSSGTQNANYPVR	0	Unmodified	2171.9832	0.98318732	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	27.289	26.707	2;3	5.5498E-210	23849	160511_QHF_FH_JSI12i_1	326.21	310.82			1.02	0.9726	10.192	8	0	Median	1.2474	1.006	1.8694	2	0	Median	0.74332	0.87074	12.736	2	0	Median	1.0605	0.9942	9.6034	2	0	Median	0.94895	0.99581	13.629	2	0	Median	556810000	262660000	294140000	109840000	50632000	59210000	146210000	70452000	75760000	119520000	62721000	56803000	181230000	78860000	102370000	39929	2332	37569	244867;244868;244869;244870;244871;244872;244873;244874	328622;328623;328624;328625;328626;328627;328628;328629;328630;328631;328632;328633;328634;328635;328636	328627			15	
NTTVSGAGVPGPLPDFGLEESGHSNSTITTSSTR	0	Unmodified	3372.607	0.60697065	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	76.748	76.308	3	2.025E-26	69561	160511_QHF_FH_JSI12i_1	102.58	96.796			1.0677	1.119	10.899	4	2	Median	NaN	NaN	NaN	0	0	Median	0.96534	1.1548	15.572	2	1	Median	1.0854	1.0412	NaN	1	1	Median	1.1466	1.2026	NaN	1	0	Median	132060000	71865000	60200000	0	0	0	70299000	35157000	35142000	31398000	22162000	9236300	30367000	14546000	15821000	39930	2493	37570	244875;244876;244877;244878	328637;328638;328639;328640;328641;328642;328643	328640			7	
NTTYDLIANIVHDGKPSEGSYR	1	Unmodified	2449.1874	0.18736644	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		80.089	80.089	3;4	1.772E-14	71486	160511_QHF_FH_JSI11i_3	121.26	72.292			1.3488	1.2635	50.59	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3488	1.2635	50.59	2	1	Median	NaN	NaN	NaN	0	0	Median	134000000	62236000	71768000	0	0	0	0	0	0	134000000	62236000	71768000	0	0	0	39931	2856	37571	244879;244880	328644;328645	328645			2	
NTVANSPQTLLAGMNK	1	Unmodified	1657.8458	0.84575455	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.442	11	4								5	4	4	2	63.206	62.551	2;3	1.2677E-27	55423	160511_QHF_FH_JSI9i_1	147.26	105.72			0.80056	0.81652	44.174	9	9	Median	1.123	0.92249	30.453	3	3	Plateau	0.65542	0.76826	16.201	2	2	Median	0.85001	0.81405	28.416	2	2	Median	1.3991	1.4327	79.515	2	2	Median	628690000	350150000	278530000	79434000	38352000	41082000	165270000	105190000	60085000	171020000	103320000	67706000	212960000	103290000	109660000	39932	1945	37572	244881;244882;244883;244884;244885;244886;244887;244888;244889;244890;244891;244892;244893;244894;244895	328646;328647;328648;328649;328650;328651;328652;328653;328654;328655;328656;328657;328658;328659;328660	328656			15	
NTVCSLSSGK	1	Unmodified	1051.4968	0.49680868	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	13.876	13.596	2	0.01637	11069	160511_QHF_FH_JSI11i_1	50.297	29.209			1.8404	1.8635	95.861	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7673	3.6704	NaN	1	1	Median	0.8991	0.94612	NaN	1	0	Median	365430000	83583000	281850000	0	0	0	0	0	0	261030000	34834000	226200000	104400000	48748000	55650000	39933	5495	37573	244896;244897	328661;328662	328661			1	
NTVELLVEDK	1	Unmodified	1158.6132	0.61321864	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	2	2	3	45.107	44.216	2;3	0.0026926	45931	160511_QHF_FH_JSI11i_2	72.434	55.194			0.78573	0.91542	115.73	8	5	Median	1.1619	0.9733	NaN	1	1	Median	1.7553	2.1621	113.04	2	1	Median	0.34479	0.35041	150.6	2	1	Median	0.60956	0.61627	88.884	3	2	Median	787910000	549800000	238100000	74147000	34184000	39963000	72627000	32600000	40027000	166440000	123930000	42510000	474690000	359090000	115600000	39934	512	37574	244898;244899;244900;244901;244902;244903;244904;244905	328663;328664;328665;328666;328667;328668	328666			6	
NTVETEREESK	1	Unmodified	1320.6157	0.61573784	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		6								2	2	2		5.6492	5.3027	2;3	0.00069636	3215	160511_QHF_FH_JSI11i_2	86.911	52.378			1.1652	1.1739	47.686	6	0	Median	0.91606	0.7736	11.708	2	0	Median	1.5119	1.8573	15.33	2	0	Median	1.1056	1.0975	56.779	2	0	Median	NaN	NaN	NaN	0	0	Median	274520000	135540000	138980000	91609000	47128000	44481000	70892000	30648000	40244000	112020000	57765000	54255000	0	0	0	39935	2574	37575	244906;244907;244908;244909;244910;244911	328669;328670;328671;328672	328670			3	
NTVGYLQWR	0	Unmodified	1135.5774	0.57744226	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			61.816	53.236	2	0.0010318	29387	160513_QHF_FH_JSI10Kac_6	89.698	67.612			0.38616	0.78812	66.103	3	3	Plateau	0.92393	0.78812	NaN	1	1	Median	0.38616	0.457	82.214	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65163000	54127000	11036000	7932800	4776600	3156200	57231000	49350000	7880100	0	0	0	0	0	0	39936	5032	37576	244912;244913;244914	328673;328674;328675	328675			3	
NTVLATWQPYTTSK	1	Unmodified	1608.8148	0.814772	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.68	4	5						5	1	2	5	4	4	66.774	62.236	2	6.0487E-22	34142	160513_QHF_FH_JSI10Kac_6	146.36	121.5			1.0596	1.1791	34.913	13	6	Median	1.4906	1.2473	48.02	2	0	Median	0.80829	0.98002	10.883	3	1	Median	1.2227	1.199	35.058	4	2	Median	0.89915	0.98645	48.586	4	3	Median	513750000	266820000	246940000	77893000	36020000	41873000	112680000	58875000	53804000	169860000	91710000	78146000	153330000	80211000	73115000	39937	4535	37577	244915;244916;244917;244918;244919;244920;244921;244922;244923;244924;244925;244926;244927;244928;244929	328676;328677;328678;328679;328680;328681;328682;328683;328684;328685;328686;328687;328688;328689;328690;328691;328692;328693;328694;328695;328696	328696			21	
NTVQGFK	1	Unmodified	792.413	0.41300269	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.53	3	4	3				2			3	3	4	2	13.801	12.104	2	0.017885	10112	160511_QHF_FH_JSI11i_1	60.788	36.816			0.99001	1.0605	24.809	12	3	Median	0.97341	0.78804	39.548	3	1	Median	0.76258	0.92851	15.538	3	1	Plateau	1.0954	1.0986	20.638	4	1	Median	0.90533	0.99672	29.642	2	0	Median	3149800000	1475100000	1674700000	848910000	351710000	497200000	956550000	510140000	446420000	996660000	426960000	569700000	347650000	186260000	161400000	39938	1417	37578	244930;244931;244932;244933;244934;244935;244936;244937;244938;244939;244940;244941	328697;328698;328699;328700;328701;328702;328703;328704;328705;328706;328707;328708;328709	328698			13	
NTVQGFKR	1	Acetyl (K)	990.52468	0.52467841	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4			3	2	1	28.6	19.428	2	0.024743	11260	160513_QHF_FH_JSI12Kac_5	69.198	24.506			0.24591	0.24324	155	6	3	Median	NaN	NaN	NaN	0	0	Median	1.2537	1.4853	211.35	3	2	Median	0.24591	0.24324	2.0582	2	0	Median	0.20222	0.21855	NaN	1	1	Median	41279000	29328000	11951000	0	0	0	10443000	4452900	5990200	29033000	23349000	5683600	1803000	1526200	276800	39939	1417	37579	244942;244943;244944;244945;244946;244947	328710;328711;328712;328713;328714	328712	1381		5	
NTVSQSISGDPEIDK	1	Unmodified	1588.758	0.75804498	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	36.951	36.438	2	7.1167E-10	32941	160511_QHF_FH_JSI12i_1	148.68	132.43			0.9299	0.91906	3.2856	6	5	Plateau	1.1711	0.96	NaN	1	1	Median	0.80503	0.94207	3.4548	2	2	Median	0.98694	0.96423	4.9305	2	2	Median	0.89977	0.91906	NaN	1	0	Median	563830000	305910000	257920000	92552000	42371000	50180000	194990000	108180000	86812000	189980000	105040000	84943000	86304000	50319000	35985000	39940	4535	37580	244948;244949;244950;244951;244952;244953	328715;328716;328717;328718;328719;328720;328721	328717			7	
NTVSQSISGDPEIDKK	2	Unmodified	1716.853	0.853008	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	3	3	1	30.217	29.685	2;3	8.017E-08	26467	160511_QHF_FH_JSI11i_1	173.68	149.83			0.74066	0.79499	38.2	8	5	Median	1.5198	1.2567	NaN	1	1	Median	0.60153	0.73141	56.673	3	3	Median	0.66617	0.65626	24.771	3	1	Median	0.82349	0.86409	NaN	1	0	Median	956140000	517360000	438780000	99271000	39149000	60121000	381200000	217220000	163980000	231290000	144920000	86371000	244380000	116070000	128310000	39941	4535	37581	244954;244955;244956;244957;244958;244959;244960;244961	328722;328723;328724;328725;328726;328727;328728;328729;328730;328731;328732	328725			11	
NTVVATGGYGR	0	Unmodified	1093.5516	0.55162144	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.25	3	4				2	3	2		3	5	3	3	23.998	19.438	2	4.6563E-07	12457	160513_QHF_FH_JSI11Kac_4	109.83	80.66			1.0242	0.9489	32.785	14	0	Median	1.1215	0.93887	1.6818	3	0	Median	0.78724	0.93279	48.873	5	0	Median	0.89306	1.0717	20.99	3	0	Plateau	0.63127	0.71046	38.834	3	0	Plateau	2495700000	1305300000	1190400000	679930000	313660000	366260000	608670000	359340000	249330000	916070000	483440000	432630000	291000000	148830000	142160000	39942	1367	37582	244962;244963;244964;244965;244966;244967;244968;244969;244970;244971;244972;244973;244974;244975	328733;328734;328735;328736;328737;328738;328739;328740;328741;328742;328743;328744;328745;328746;328747;328748;328749;328750;328751	328743			19	
NTVVLFVPQQEAWVVER	0	Unmodified	2013.0684	0.068360922	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	5.2	4	7							2	1	5	4	3	94.823	93.475	2;3	3.5482E-16	84208	160511_QHF_FH_JSI11i_2	131.48	122.66			0.92925	1.0137	13.805	13	6	Median	1.1656	1.0455	NaN	1	1	Median	0.86026	1.0107	9.7623	5	3	Median	0.94072	0.93541	20.978	4	1	Median	1.0327	1.1691	13.612	3	1	Plateau	484160000	253450000	230710000	48059000	23256000	24803000	161890000	90358000	71531000	164690000	81390000	83297000	109520000	58442000	51082000	39943	5357	37583	244976;244977;244978;244979;244980;244981;244982;244983;244984;244985;244986;244987;244988	328752;328753;328754;328755;328756;328757;328758;328759;328760;328761;328762;328763;328764;328765;328766;328767	328762			14	
NTVVPTKK	2	Unmodified	885.52837	0.5283668	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.62	3	9	8					3	3	6	6	6	8	8.7593	6.6487	2;3	0.0024321	5918	160511_QHF_FH_JSI10i_2	80.438	49.149			0.97842	1.0188	49.518	26	7	Median	1.1732	0.98992	57.992	6	3	Median	0.73257	0.87764	21.02	6	0	Median	0.99224	0.99399	16.282	6	0	Median	0.96423	1.0772	72.677	8	4	Median	8382400000	4081500000	4300900000	1012000000	487460000	524540000	1496600000	826680000	669900000	2393100000	1223400000	1169700000	3480700000	1544000000	1936700000	39944	982	37584	244989;244990;244991;244992;244993;244994;244995;244996;244997;244998;244999;245000;245001;245002;245003;245004;245005;245006;245007;245008;245009;245010;245011;245012;245013;245014	328768;328769;328770;328771;328772;328773;328774;328775;328776;328777;328778;328779;328780;328781;328782;328783;328784;328785;328786;328787;328788;328789;328790;328791;328792;328793;328794;328795;328796;328797	328789			28	
NTWDCGLQILK	1	Unmodified	1346.6653	0.66527099	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.312	72.362	2	0.0006737	63372	160511_QHF_FH_JSI11i_2	82.645	67.016			0.46348	0.50174	44.58	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67444	0.68767	NaN	1	1	Median	0.31851	0.36608	NaN	1	1	Median	93789000	63325000	30464000	0	0	0	0	0	0	27821000	14706000	13115000	65968000	48619000	17349000	39945	1792	37585	245015;245016	328798;328799	328799			2	
NTYYASIAK	1	Unmodified	1029.5131	0.51311067	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	4.09	5	4						1		4	2	3	1	31.346	29.617	2	0.0015942	25842	160511_QHF_FH_JSI10i_2	68.371	57.302			0.82858	0.94842	64.039	9	3	Median	0.70189	0.59434	41.66	3	2	Median	0.8218	0.97198	3.4705	2	0	Median	1.4796	1.5199	107.84	3	1	Median	0.94592	1.0471	NaN	1	0	Median	2169600000	1210800000	958820000	364040000	198460000	165580000	606700000	355450000	251250000	826870000	458470000	368400000	371980000	198400000	173580000	39946	997	37586	245017;245018;245019;245020;245021;245022;245023;245024;245025;245026	328800;328801;328802;328803;328804;328805;328806;328807;328808;328809;328810;328811;328812;328813	328813			14	
NVAALQER	0	Unmodified	899.48248	0.48247924	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.923	17.835	2	0.02445	14668	160511_QHF_FH_JSI12i_2	44.377	23.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39947	2841	37587	245027	328814	328814			1	
NVADYYPEYK	1	Unmodified	1260.5663	0.56626845	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				1	2	1	45.904	45.41	2	5.7374E-05	41209	160511_QHF_FH_JSI12i_1	91.584	84.364			0.83329	0.84653	58.449	3	1	Median	NaN	NaN	NaN	0	0	Median	0.34754	0.41246	NaN	1	1	Median	1.3616	1.3127	NaN	1	0	Median	0.83329	0.84653	NaN	1	0	Median	407040000	237140000	169900000	0	0	0	74385000	43963000	30423000	147970000	82358000	65611000	184690000	110820000	73868000	39948	1954	37588	245028;245029;245030;245031	328815;328816;328817;328818;328819	328816			5	
NVAEALGHSPK	1	Unmodified	1121.5829	0.58292157	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		22.511	22.176	2	0.00011006	18344	160511_QHF_FH_JSI11i_2	97.734	76.864			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8053700	8053700	0	0	0	0	0	0	0	8053700	8053700	0	0	0	0	39949	3391	37589	245032	328820	328820			1	
NVAGAEAPPPQK	1	Unmodified	1177.6091	0.60913632	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	14.934	14.664	2	1.1259E-05	12661	160511_QHF_FH_JSI12i_1	117.52	95.283			0.71382	0.73595	61.775	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.7433	1.9585	NaN	1	1	Median	2.3705	2.3065	NaN	1	1	Median	0.71382	0.73595	NaN	1	0	Median	118780000	46976000	71808000	0	0	0	32724000	6658900	26065000	34311000	9658000	24654000	51749000	30659000	21090000	39950	5245	37590	245033;245034;245035	328821;328822;328823	328822			3	
NVAIFTAGQESPIILR	0	Unmodified	1727.957	0.95701956	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	88.856	88.217	2	1.214E-07	77612	160511_QHF_FH_JSI11i_2	132.79	116.16			0.14535	0.15511	148.48	4	4	Median	NaN	NaN	NaN	0	0	Median	0.093059	0.11045	NaN	1	1	Median	0.49077	0.51161	222.69	2	2	Median	0.20716	0.21785	NaN	1	1	Median	77515000	48685000	28830000	0	0	0	15549000	11335000	4213600	44849000	24740000	20109000	17117000	12610000	4506900	39951	641	37591	245036;245037;245038;245039	328824;328825;328826;328827	328826			4	
NVALLSQLYHSPAR	0	Unmodified	1567.8471	0.84707518	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.68	6.63		11	8						12	9	9	7	6	72.016	68.028	2;3	7.4316E-25	37102	160513_QHF_FH_JSI10Kac_6	211.22	177.01			1.0004	1.082	156.07	22	22	Median	0.8707	0.73206	163.63	6	6	Median	0.53736	0.62413	137.56	6	6	Median	3.7003	3.645	163.09	6	6	Median	0.79066	0.82846	160.25	4	4	Median	1637200000	842070000	795140000	380420000	178340000	202080000	595350000	368170000	227190000	358080000	132160000	225920000	303360000	163400000	139950000	39952	2700	37592	245040;245041;245042;245043;245044;245045;245046;245047;245048;245049;245050;245051;245052;245053;245054;245055;245056;245057;245058;245059;245060;245061;245062;245063;245064;245065;245066;245067;245068;245069;245070	328828;328829;328830;328831;328832;328833;328834;328835;328836;328837;328838;328839;328840;328841;328842;328843;328844;328845;328846;328847;328848;328849;328850;328851;328852;328853;328854;328855;328856;328857;328858;328859;328860	328859			33	
NVAQVAEDTVLQNR	0	Unmodified	1555.7954	0.79543354	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.115	61.593	2	5.8225E-05	53584	160511_QHF_FH_JSI11i_2	74.611	48.492			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39953	5628	37593	245071	328861	328861			1	
NVAQYNANHPDFPMQIEQLER	0	Unmodified	2513.1758	0.17575589	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	74.444	73.856	3	5.6322E-37	64105	160511_QHF_FH_JSI12i_3	192.98	187.32			0.9174	1.0173	13.647	5	3	Median	NaN	NaN	NaN	0	0	Median	0.63045	0.76813	NaN	1	1	Median	0.99597	0.97552	6.007	2	1	Median	1.0018	1.0554	5.1986	2	1	Median	775960000	425280000	350670000	0	0	0	160900000	98377000	62527000	388300000	214410000	173890000	226760000	112500000	114260000	39954	2517	37594	245072;245073;245074;245075;245076	328862;328863;328864;328865;328866;328867	328867			6	
NVASGGGGVGDGVQEPTTGNWR	0	Unmodified	2113.9777	0.97770801	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	46.952	46.163	2	5.6865E-212	41992	160511_QHF_FH_JSI12i_1	331.19	306.47			1.0408	1.0165	12.764	6	1	Median	1.1913	1.0113	12.584	2	0	Median	0.80409	0.98793	24.102	2	1	Median	1.0257	0.95969	NaN	1	0	Median	1.0561	1.0766	NaN	1	0	Median	348320000	194080000	154240000	91407000	40629000	50778000	102440000	62723000	39722000	70293000	43979000	26314000	84175000	46747000	37428000	39955	133	37595	245077;245078;245079;245080;245081;245082;245083	328868;328869;328870;328871;328872;328873;328874;328875;328876;328877;328878;328879	328873			12	
NVASVCLQIGYPTVASVPHSIINGYK	1	Unmodified	2786.4425	0.44253527	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	2	1	2	93.374	92.196	3	8.9059E-79	44448	160513_QHF_FH_JSI10Kac_6	209.28	190.88			1.0664	1.1661	28.815	6	0	Median	1.4199	1.204	NaN	1	0	Median	0.83543	1.0144	15.177	2	0	Median	0.86946	0.87467	NaN	1	0	Median	1.5107	1.6279	22.331	2	0	Median	413170000	199750000	213420000	26850000	9332000	17518000	143340000	76657000	66678000	118270000	63290000	54979000	124710000	50471000	74242000	39956	837	37596	245084;245085;245086;245087;245088;245089	328880;328881;328882;328883;328884;328885;328886	328886			7	
NVATEGTSTQK	1	Unmodified	1134.5517	0.55168102	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	7.6868	7.2719	2	8.1557E-06	4861	160511_QHF_FH_JSI9i_1	112.36	85.973			1.7865	1.9588	70.574	5	5	Median	0.87004	0.71483	66.575	2	2	Median	1.7865	2.1	NaN	1	1	Median	2.0562	1.9588	NaN	1	1	Median	2.5366	2.5684	NaN	1	1	Median	572780000	259680000	313110000	243810000	118340000	125470000	108060000	60918000	47146000	107040000	40074000	66966000	113870000	40341000	73527000	39957	4603	37597	245090;245091;245092;245093;245094	328887;328888;328889;328890;328891	328891			5	
NVAVDELSR	0	Unmodified	1001.5142	0.5141733	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			2	2	3	2	34.936	31.216	2	0.00069397	26625	160511_QHF_FH_JSI11i_2	86.67	51.375			1.0929	1.0924	24.784	9	3	Median	1.7572	1.4571	1.5077	2	1	Median	0.87715	1.033	6.9503	2	0	Median	0.9121	0.90954	11.573	3	1	Plateau	1.3938	1.5068	33.057	2	1	Median	2237200000	1111100000	1126100000	571020000	237260000	333760000	504400000	296730000	207670000	883800000	449970000	433840000	277960000	127170000	150790000	39958	1090	37598	245095;245096;245097;245098;245099;245100;245101;245102;245103	328892;328893;328894;328895;328896;328897;328898;328899;328900;328901;328902	328901			10	
NVAVVNSLYK	1	Unmodified	1105.6132	0.61315906	5455	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	50.336	49.375	2	0.02841	42610	160511_QHF_FH_JSI11i_2	47.706	33.032			0.98436	1.0415	16.87	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1423	1.1734	NaN	1	1	Median	0.84823	0.92434	NaN	1	1	Median	78306000	52492000	25813000	0	0	0	0	0	0	40211000	26267000	13943000	38095000	26225000	11870000	39959	5455	37599	245104;245105	328903;328904	328904			2	
NVAYDTLPIVVHGNGPTK	1	Unmodified	1893.9949	0.99486163	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	63.089	62.184	2;3	2.8935E-32	54096	160511_QHF_FH_JSI11i_2	146.96	114.63			0.909	0.85474	19.017	4	2	Median	0.99196	0.87511	NaN	1	1	Median	0.58422	0.70515	NaN	1	0	Median	0.83298	0.83485	NaN	1	1	Median	0.99291	1.1174	NaN	1	0	Median	640130000	351530000	288590000	101510000	47267000	54245000	144730000	98782000	45949000	236570000	119780000	116790000	157310000	85706000	71607000	39960	430	37600	245106;245107;245108;245109;245110;245111;245112;245113	328905;328906;328907;328908;328909;328910;328911;328912	328911			8	
NVCLPPEMEVALTEDQVPALK	1	Unmodified	2352.1705	0.17051909	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.09	101.01	3	1.3649E-06	91570	160511_QHF_FH_JSI12i_1	74.698	61.51			0.62327	0.69929	7.0116	2	1	Median	NaN	NaN	NaN	0	0	Median	0.61783	0.73483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62876	0.66546	NaN	1	0	Median	136290000	82536000	53758000	0	0	0	76501000	54700000	21802000	0	0	0	59792000	27836000	31956000	39961	1298	37601	245114;245115	328913;328914	328913			2	
NVCTEAGMFAIR	0	Unmodified	1367.6326	0.63259065	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	61.303	60.39	2	0.001151	53513	160511_QHF_FH_JSI10i_2	85.29	64.987			0.5449	0.59064	12.394	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52777	0.54108	NaN	1	1	Median	0.56258	0.64474	NaN	1	1	Median	138260000	93761000	44503000	0	0	0	0	0	0	90392000	60389000	30003000	47872000	33371000	14501000	39962	2006	37602	245116;245117;245118	328915;328916;328917	328917			3	
NVDEAINFINER	0	Unmodified	1432.6947	0.69465686	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								1	3	3	3	69.701	68.895	2	8.4851E-05	59254	160511_QHF_FH_JSI12i_2	120.96	94.445			1.2198	1.1973	143.03	9	9	Median	0.45414	0.3886	NaN	1	1	Median	0.72977	0.90115	150.68	2	2	Median	1.2308	1.1973	206.7	3	3	Median	1.2198	1.3008	151.25	3	3	Median	581300000	303080000	278230000	66147000	47685000	18462000	152310000	88764000	63547000	208770000	89960000	118810000	154070000	76666000	77408000	39963	1745	37603	245119;245120;245121;245122;245123;245124;245125;245126;245127;245128	328918;328919;328920;328921;328922;328923;328924;328925;328926;328927;328928	328921			11	
NVDENIRK	1	Unmodified	986.51451	0.51450765	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	9.3862	8.9602	2	0.012319	6618	160511_QHF_FH_JSI12i_2	70.919	29.89			2.5129	2.6547	89.528	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.81	4.9997	NaN	1	1	Median	1.3129	1.4095	NaN	1	1	Median	123240000	38064000	85173000	0	0	0	0	0	0	78636000	19602000	59034000	44601000	18462000	26139000	39964	4686	37604	245129;245130	328929;328930	328929			2	
NVDFNYATK	1	Unmodified	1070.5033	0.50327426	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	37.664	36.753	2	0.001485	32590	160511_QHF_FH_JSI9i_1	71.425	32.876			2.5456	2.3516	11.141	2	2	Median	2.6424	2.1735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4524	2.5444	NaN	1	1	Median	229910000	98118000	131800000	111020000	44563000	66460000	0	0	0	0	0	0	118890000	53556000	65335000	39965	3801	37605	245131;245132;245133	328931;328932;328933	328933			3	
NVDGVNYASITR	0	Unmodified	1307.647	0.64697839	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.62	5	4	1				1			3	2	2	4	44.979	43.225	2	6.735E-09	38979	160511_QHF_FH_JSI10i_1	141.08	119.64			0.8909	0.98696	41.521	11	5	Median	1.9364	1.587	21.693	3	2	Median	0.6857	0.82875	16.759	2	0	Median	0.84995	0.84256	3.3905	2	0	Median	0.9109	0.99466	61.016	4	3	Median	4307300000	2218000000	2089300000	655360000	264730000	390630000	1038800000	580160000	458640000	1147000000	588080000	558910000	1466100000	785000000	681150000	39966	5250	37606	245134;245135;245136;245137;245138;245139;245140;245141;245142;245143;245144	328934;328935;328936;328937;328938;328939;328940;328941;328942;328943;328944;328945;328946;328947;328948;328949;328950	328941			17	
NVDILKDPETVK	2	Unmodified	1369.7453	0.74529545	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	2	2	4	48.189	47.125	2;3	0.0003056	40175	160511_QHF_FH_JSI12i_2	77.527	62.84			0.14013	0.16566	232.3	6	6	Median	1.2438	1.0552	339.33	2	2	Median	0.12042	0.14986	NaN	1	1	Median	0.072411	0.072457	NaN	1	1	Median	1.1253	1.263	273.1	2	2	Median	708030000	458560000	249470000	191850000	99777000	92074000	121050000	117270000	3778700	132730000	123740000	8994000	262400000	117780000	144620000	39967	231	37607	245145;245146;245147;245148;245149;245150;245151;245152;245153;245154;245155	328951;328952;328953;328954;328955;328956;328957;328958;328959;328960;328961	328952			11	
NVDILKDPETVK	2	Acetyl (K)	1411.7559	0.75586013	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			71.529	62.154	2	0.0042341	30987	160513_QHF_FH_JSI10Kac_3	70.17	44.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1474500	1474500	0	0	0	0	1474500	1474500	0	0	0	0	0	0	0	39968	231	37607	245156	328962	328962	128		1	
NVDLLSDMVQEHDEPILK	1	Unmodified	2094.0303	0.030320436	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.458	2	25	5							6	9	10	7	91.181	90.743	2;3	1.3536E-32	78740	160511_QHF_FH_JSI11i_2	152.99	131.74			0.66311	0.65483	103.07	26	19	Median	0.8321	0.71591	49.332	5	2	Median	0.61469	0.75497	113.61	7	6	Median	0.64395	0.63222	101.44	8	6	Median	0.63313	0.66617	142.78	6	5	Median	2651600000	1356200000	1295500000	377930000	194580000	183350000	679880000	350340000	329550000	1041700000	587570000	454100000	552150000	223680000	328470000	39969	1852	37608	245157;245158;245159;245160;245161;245162;245163;245164;245165;245166;245167;245168;245169;245170;245171;245172;245173;245174;245175;245176;245177;245178;245179;245180;245181;245182;245183;245184;245185;245186;245187;245188	328963;328964;328965;328966;328967;328968;328969;328970;328971;328972;328973;328974;328975;328976;328977;328978;328979;328980;328981;328982;328983;328984;328985;328986;328987;328988;328989;328990;328991;328992;328993;328994;328995;328996;328997;328998;328999;329000;329001;329002;329003;329004;329005;329006;329007;329008;329009;329010;329011;329012;329013;329014	328998			51	
NVDLLSDMVQEHDEPILK	1	Oxidation (M)	2110.0252	0.025235058	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	70.954	70.083	3	3.6205E-05	62114	160511_QHF_FH_JSI10i_2	89.468	77.738			0.37864	0.41561	53.412	4	4	Median	NaN	NaN	NaN	0	0	Median	0.22579	0.27741	63.094	2	2	Median	0.40214	0.39855	NaN	1	1	Median	0.58499	0.632	NaN	1	1	Median	117530000	87817000	29708000	0	0	0	60975000	49270000	11705000	29668000	20073000	9595300	26883000	18475000	8408100	39970	1852	37608	245189;245190;245191;245192	329015;329016;329017;329018	329017		1535	4	
NVDLLSDMVQEHDEPILKHLK	2	Acetyl (K)	2514.2788	0.27882398	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		86.498	78.986	4	0.0011746	44959	160513_QHF_FH_JSI10Kac_6	70.959	59.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	389800000	389800000	0	0	0	0	51658000	51658000	0	338150000	338150000	0	0	0	0	39971	1852	37609	245193;245194	329019;329020	329020	1869		2	
NVDLSTFYQNR	0	Unmodified	1355.647	0.64697839	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.32	4	4	1				1	4		3	5	4	2	63.827	60.348	2	6.2748E-18	52629	160511_QHF_FH_JSI11i_2	157.96	145.73			0.86862	1.0144	21.385	11	1	Linear	1.2251	1.0446	22.142	3	0	Plateau	0.8242	0.9919	31.017	3	1	Plateau	0.90589	0.8976	4.3563	3	0	Median	0.9252	0.97767	5.2105	2	0	Median	1190800000	556410000	634400000	235310000	94031000	141270000	325830000	160200000	165630000	362470000	172980000	189490000	267200000	129200000	138000000	39972	611	37610	245195;245196;245197;245198;245199;245200;245201;245202;245203;245204;245205;245206;245207;245208	329021;329022;329023;329024;329025;329026;329027;329028;329029;329030;329031;329032;329033;329034;329035;329036;329037;329038;329039;329040;329041	329035			21	
NVDMLSELVQEYDEPILK	1	Unmodified	2134.0504	0.050387176	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	102.02	101.92	2;3	1.012E-183	87816	160511_QHF_FH_JSI12i_2	360.97	301.4			0.7453	0.73597	58.192	5	2	Median	0.87089	0.73597	NaN	1	0	Median	0.58174	0.71126	34.28	2	1	Median	0.2468	0.24713	NaN	1	1	Median	0.99179	1.0971	NaN	1	0	Median	856010000	464240000	391760000	215460000	115090000	100370000	201680000	130200000	71483000	156030000	86893000	69138000	282830000	132060000	150770000	39973	4309	37611	245209;245210;245211;245212;245213;245214;245215	329042;329043;329044;329045;329046;329047;329048;329049;329050	329044			9	
NVDPFHIYFCNLK	1	Unmodified	1665.7973	0.79734779	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2		1	2	2	85.518	81.335	3	8.7294E-05	39670	160513_QHF_FH_JSI12Kac_6	73.927	63.293			1.039	0.96856	25.921	5	0	Median	NaN	NaN	NaN	0	0	Median	0.80433	0.96368	NaN	1	0	Median	0.92024	0.88702	12.437	2	0	Median	1.2602	1.3781	20.999	2	0	Median	188870000	88125000	100750000	0	0	0	26143000	15338000	10805000	105360000	47950000	57413000	57366000	24837000	32529000	39974	3217	37612	245216;245217;245218;245219;245220	329051;329052;329053;329054	329054			4	
NVDTNQDR	0	Unmodified	960.42609	0.42608657	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	5.27	2.6476	2	0.0020541	2846	160511_QHF_FH_JSI12i_1	92.439	55.883			1.1747	1.1409	72.477	6	3	Median	0.45851	0.37592	NaN	1	0	Median	2.3769	2.7924	NaN	1	1	Median	1.1747	1.1409	24.733	2	1	Median	1.3921	1.4921	63.625	2	1	Median	1092600000	398940000	693670000	58409000	34558000	23851000	355520000	115180000	240340000	364580000	124170000	240420000	314100000	125030000	189070000	39975	2195	37613	245221;245222;245223;245224;245225;245226	329055;329056;329057;329058;329059;329060	329056			6	
NVDTNQDRLVTLEEFLASTQR	0	Unmodified	2448.2245	0.22448023	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			97.77	97.635	3	0.00095815	86416	160511_QHF_FH_JSI10i_2	44.105	30.089			0.82897	1.0182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82897	1.0182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14538000	5759900	8777800	0	0	0	14538000	5759900	8777800	0	0	0	0	0	0	39976	2195	37614	245227	329061	329061			1	
NVDVYDKR	1	Unmodified	1007.5036	0.50360861	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		14.409	14.186	2	0.011404	11239	160511_QHF_FH_JSI11i_2	72.042	41.875			0.46784	0.48364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46784	0.48364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22896000	15083000	7813800	0	0	0	0	0	0	22896000	15083000	7813800	0	0	0	39977	2084	37615	245228	329062	329062			1	
NVEAMNFADIER	0	Unmodified	1407.6453	0.64526383	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.64	8	3	1							4	2	3	3	64.094	63.388	2	1.934E-07	54236	160511_QHF_FH_JSI12i_2	133.07	121.92			1.2587	1.2293	72.866	11	9	Median	3.6726	3.1227	89.51	3	3	Plateau	1.2792	1.4972	90.292	2	2	Median	1.2587	1.2293	75.195	3	2	Median	0.81824	0.91123	93.656	3	2	Median	918080000	384620000	533450000	155890000	63755000	92134000	193200000	91798000	101400000	324570000	126140000	198430000	244420000	102930000	141490000	39978	1465	37616	245229;245230;245231;245232;245233;245234;245235;245236;245237;245238;245239;245240	329063;329064;329065;329066;329067;329068;329069;329070;329071;329072;329073;329074;329075;329076;329077	329065			15	
NVEDFTGPR	0	Unmodified	1033.4829	0.48287317	1928	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	3.99	5	3					1			2	1	1	5	32.248	30.428	2	0.00030496	25532	160511_QHF_FH_JSI12i_2	93.429	73.725			0.79713	0.66558	84.566	9	8	Median	1.4291	1.2029	83.701	2	1	Median	2.6711	3.183	NaN	1	1	Median	0.35329	0.34682	NaN	1	1	Median	0.57149	0.63705	79.065	5	5	Median	1134700000	526910000	607840000	218250000	86475000	131780000	188730000	77094000	111640000	127810000	77070000	50739000	599950000	286270000	313680000	39979	1928	37617	245241;245242;245243;245244;245245;245246;245247;245248;245249	329078;329079;329080;329081;329082;329083;329084;329085;329086;329087	329079			10	
NVEELVIVLK	1	Unmodified	1154.6911	0.69107503	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	86.778	86.063	2	0.00016496	76364	160511_QHF_FH_JSI10i_2	95.099	79.484			0.23672	0.25563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23672	0.25563	NaN	1	1	Median	49581000	45877000	3703800	0	0	0	11023000	11023000	0	20904000	20904000	0	17655000	13951000	3703800	39980	1804	37618	245250;245251;245252	329088;329089;329090	329090			3	
NVEGQDMLYQSLK	1	Unmodified	1523.729	0.72899346	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	60.009	59.443	2	6.0666E-06	53686	160511_QHF_FH_JSI10i_1	127.17	110.54			0.86007	0.89513	42.961	6	5	Median	1.461	1.1992	NaN	1	1	Median	0.85441	1.002	55.61	2	2	Median	0.7877	0.77768	59.546	2	2	Median	0.61645	0.64251	NaN	1	0	Median	585690000	319010000	266670000	107490000	47448000	60041000	179570000	92788000	86786000	204160000	121910000	82249000	94466000	56868000	37598000	39981	2046;2296	37619	245253;245254;245255;245256;245257;245258	329091;329092;329093;329094;329095;329096;329097	329095			7	
NVEGVEEVHELHVWQLAGSR	0	Unmodified	2287.1345	0.13454301	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	0				By MS/MS	3	0			3										3	72.446	72.15	3	1.1236E-05	62680	160511_QHF_FH_JSI12i_3	69.763	61.542			1.1275	1.1089	47.781	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1275	1.1089	47.781	2	1	Median	74790000	30810000	43980000	0	0	0	0	0	0	0	0	0	74790000	30810000	43980000	39982	5739	37620	245259;245260;245261	329098;329099;329100	329098			3	
NVELVEGEEGR	0	Unmodified	1229.5888	0.58879481	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.282	31.898	2	5.6699E-05	28430	160511_QHF_FH_JSI10i_1	102.52	80.838			9.1798	8.6958	69.621	3	3	Plateau	NaN	NaN	NaN	0	0	Median	5.5535	6.7688	NaN	1	1	Median	9.1798	8.6958	NaN	1	1	Median	2.2736	2.3429	NaN	1	1	Median	204320000	45606000	158710000	0	0	0	66189000	15833000	50356000	65871000	6769200	59102000	72255000	23004000	49251000	39983	1785	37621	245262;245263;245264	329101;329102;329103	329103			3	
NVEMFMTIEK	1	Unmodified	1240.5832	0.58318084	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	72.585	71.781	2	0.0019485	61821	160511_QHF_FH_JSI12i_2	66.595	51.929			0.65449	0.68343	168.06	2	2	Median	2.5519	2.2429	NaN	1	1	Median	0.16786	0.20825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36692000	19941000	16751000	17025000	4013200	13012000	19666000	15928000	3738500	0	0	0	0	0	0	39984	3685	37622	245265;245266;245267	329104;329105;329106	329104			3	
NVEQDELQQVIR	0	Unmodified	1469.7474	0.74742071	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		56.5	56.086	2	0.002813	50828	160511_QHF_FH_JSI11i_1	58.743	35.367			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39985	1305	37623	245268	329107	329107			1	
NVESFASMLR	0	Unmodified	1152.5597	0.55974328	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.421	69.473	2	0.0060025	59865	160511_QHF_FH_JSI12i_2	62.869	46.987			8.9206	9.4481	4.208	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.6444	9.7335	NaN	1	1	Median	8.251	9.1711	NaN	1	1	Median	176200000	25214000	150990000	0	0	0	0	0	0	112350000	16617000	95735000	63852000	8597300	55255000	39986	5528	37624	245269;245270	329108;329109	329108			2	
NVESGEEELASK	1	Unmodified	1290.5939	0.59393976	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	24.725	24.215	2	0.00010681	21361	160511_QHF_FH_JSI12i_1	103.34	75.6			2.6748	2.8406	138.55	6	6	Median	4.4174	3.576	NaN	1	1	Median	0.62076	0.69486	193.94	2	2	Median	3.0779	2.9469	NaN	1	1	Median	0.85859	0.88253	175.07	2	2	Median	190060000	72137000	117930000	50756000	6409800	44346000	52768000	33649000	19119000	30916000	5783000	25133000	55625000	26295000	29330000	39987	4114	37625	245271;245272;245273;245274;245275;245276;245277	329110;329111;329112;329113;329114;329115;329116	329112			7	
NVESTNSNAYTQR	0	Unmodified	1482.6699	0.66989867	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.107	13.98	2	0.00049971	11483	160511_QHF_FH_JSI11i_1	69.451	59.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39988	3336	37626	245278	329117	329117			1	
NVESYTK	1	Unmodified	839.4025	0.40249759	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.6	6.05	1	2					2			1	2	2		13.157	9.3976	2	0.03822	6738	160513_QHF_FH_JSI11Kac_4	67.032	50.559			2.9164	3.6116	61.6	5	5	Median	1.3913	1.1835	NaN	1	1	Median	2.7707	3.3431	10.924	2	2	Median	5.0816	5.0011	33.766	2	2	Median	NaN	NaN	NaN	0	0	Median	640390000	211840000	428550000	143500000	82028000	61470000	118340000	41791000	76553000	378550000	88024000	290520000	0	0	0	39989	816	37627	245279;245280;245281;245282;245283	329118;329119;329120;329121;329122	329120			5	
NVESYTKLGNPTR	1	Acetyl (K)	1519.7631	0.76307078	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							3				2	1		55.071	44.381	2	1.4112E-07	25687	160513_QHF_FH_JSI11Kac_4	106.01	98.441			0.44467	0.43446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44467	0.43446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5951500	4362200	1589300	0	0	0	1401000	959600	441420	4550500	3402600	1147900	0	0	0	39990	816	37628	245284;245285;245286	329123;329124;329125;329126	329126	463		4	
NVEVIELAK	1	Unmodified	1013.5757	0.57571092	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	54.05	53.513	2	0.0045868	48459	160511_QHF_FH_JSI11i_1	66.621	42.466			9.5726	9.7582	44.09	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.679	13.328	NaN	1	1	Median	6.699	7.1445	NaN	1	1	Median	76149000	9314800	66834000	0	0	0	0	0	0	52931000	5547100	47384000	23217000	3767700	19449000	39991	107	37629	245287;245288	329127;329128	329127			2	
NVFDEAILAALEPPEPK	1	Unmodified	1851.9618	0.96183016	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	101.93	101.82	2;3	2.9136E-30	87699	160511_QHF_FH_JSI12i_2	188.25	152.52			0.95078	1.0188	19.419	8	0	Median	1.1227	0.96114	20.071	2	0	Median	0.79779	0.99254	3.597	2	0	Median	0.87026	0.88716	40.819	2	0	Median	0.99178	1.0951	10.109	2	0	Median	2267800000	1111800000	1156000000	439870000	204070000	235800000	491460000	276110000	215350000	771160000	364020000	407140000	565360000	267610000	297740000	39992	1924	37630	245289;245290;245291;245292;245293;245294;245295;245296;245297	329129;329130;329131;329132;329133;329134	329130			6	
NVFDEAILAALEPPEPKK	2	Unmodified	1980.0568	0.056793183	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.2	101.09	3	2.1998E-06	88776	160511_QHF_FH_JSI11i_2	95.666	85.745			1.1232	1.234	15.347	4	0	Median	1.0746	0.91782	NaN	1	0	Median	1.034	1.2395	NaN	1	0	Median	1.2021	1.2285	NaN	1	0	Median	1.1741	1.2702	NaN	1	0	Median	674330000	317100000	357230000	118370000	57898000	60477000	152800000	79677000	73122000	163000000	71639000	91360000	240160000	107890000	132270000	39993	1924	37631	245298;245299;245300;245301	329135;329136;329137;329138;329139;329140;329141	329138			7	
NVFEALSELIILTASHCLHGK	1	Unmodified	2351.2308	0.23075158	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	99.807	92.226	4	1.413E-13	55061	160513_QHF_FH_JSI10Kac_6	168.27	152.37			2.6573	2.7901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6573	2.7901	NaN	1	1	Median	102570000	20833000	81741000	0	0	0	64676000	0	64676000	0	0	0	37898000	20833000	17065000	39994	2771	37632	245302;245303	329142;329143	329143			2	
NVFEETSVK	1	Unmodified	1051.5186	0.51858998	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	34.676	33.835	2	0.0020179	30284	160511_QHF_FH_JSI10i_1	67.897	52.637			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39995	1537	37633	245304;245305	329144;329145	329145			2	
NVFEMIAK	1	Unmodified	950.48954	0.48953845	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		67.33	66.567	2	0.009156	58106	160511_QHF_FH_JSI11i_2	65.252	46.521			0.56488	0.58049	17.127	3	3	Plateau	0.65764	0.58049	NaN	1	1	Median	0.63813	0.7705	NaN	1	1	Median	0.5515	0.56596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	198440000	106300000	92140000	27908000	15398000	12510000	73591000	32034000	41557000	96943000	58870000	38073000	0	0	0	39996	2883	37634	245306;245307;245308	329146;329147;329148	329147			3	
NVFENPTMVQFDHR	0	Unmodified	1732.7991	0.79913871	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	63.411	62.52	3	0.049366	55402	160511_QHF_FH_JSI10i_2	37.77	31.607			0.84317	0.91645	11.078	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73467	0.89858	NaN	1	0	Median	1.0919	1.0986	NaN	1	0	Median	0.84317	0.91645	NaN	1	0	Median	135120000	74783000	60333000	0	0	0	38812000	27260000	11552000	63315000	34244000	29071000	32989000	13280000	19710000	39997	3215	37635	245309;245310;245311	329149	329149			0	
NVFFSPMSMSCALAMVYMGAK	1	Unmodified	2341.0437	0.04374413	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	98.722	90.395	2;3	1.0367E-209	51281	160513_QHF_FH_JSI11Kac_6	302.63	284.53			1.3364	1.512	46.437	7	0	Median	2.8168	2.3683	NaN	1	0	Median	1.2182	1.4575	13.85	2	0	Median	0.7203	0.68277	3.6307	2	0	Median	1.4671	1.5438	2.9417	2	0	Median	1390900000	607020000	783920000	59062000	15945000	43117000	305860000	137440000	168420000	696490000	337070000	359420000	329520000	116560000	212960000	39998	1425	37636	245312;245313;245314;245315;245316;245317;245318	329150;329151;329152;329153;329154;329155;329156;329157	329153			8	
NVFFSPMSMSCALAMVYMGAK	1	Oxidation (M)	2357.0387	0.038658752	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	95.487	86.045	3	8.8739E-05	46723	160513_QHF_FH_JSI12Kac_6	62.362	59.354			3.3863	3.6892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3863	3.6892	NaN	1	0	Median	11114000	3697200	7416600	0	0	0	0	0	0	0	0	0	11114000	3697200	7416600	39999	1425	37636	245319	329158	329158		1084	1	
NVFHAFITIGK	1	Unmodified	1245.687	0.68699271	2814	Q3KQZ1	SLC25A35	Solute carrier family 25 member 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	1	2	1	75.305	67.912	3	0.00052736	36650	160513_QHF_FH_JSI11Kac_6	74.46	64.228			2.4142	2.3857	161.8	4	4	Median	4.9614	4.2669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45365	0.44041	156.72	2	2	Median	4.2933	4.7281	NaN	1	1	Median	47760000	16176000	31584000	6547100	1009800	5537300	0	0	0	30648000	12707000	17941000	10565000	2458400	8106200	40000	2814	37637	245320;245321;245322;245323;245324	329159;329160;329161;329162;329163	329160			5	
NVFHIASQKNFK	2	Acetyl (K)	1473.7728	0.7728476	3491	Q8N0T1	C8orf59	Uncharacterized protein C8orf59	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									16	4	4	4	4	60.565	51.284	2;3	1.4998E-19	26930	160513_QHF_FH_JSI12Kac_6	179.19	146.78			19.206	18.596	332.31	9	9	Median	1.4992	1.294	458.38	2	2	Median	20.381	24.717	330.91	3	3	Median	1.0253	0.98954	414.86	2	2	Median	1.2537	1.3479	502.94	2	2	Median	962120000	496600000	465520000	226590000	103070000	123530000	294210000	166210000	128000000	199890000	110300000	89591000	241430000	117030000	124400000	40001	3491	37638	245325;245326;245327;245328;245329;245330;245331;245332;245333;245334;245335;245336;245337;245338;245339;245340	329164;329165;329166;329167;329168;329169;329170;329171;329172;329173;329174;329175;329176;329177;329178;329179;329180	329175	2869		17	
NVFHYLMAFLR	0	Unmodified	1409.7278	0.72781167	1389	P32019	INPP5B	Type II inositol 1,4,5-trisphosphate 5-phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			95.988	88.595	3	1.4486E-08	52011	160513_QHF_FH_JSI10Kac_6	103.31	89.069			0.22752	0.19394	NaN	1	1	Median	0.22752	0.19394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132890000	76751000	56134000	35157000	16358000	18799000	97729000	60394000	37336000	0	0	0	0	0	0	40002	1389	37639	245341;245342;245343;245344	329181;329182;329183;329184	329184			4	
NVFIAQNVASLQELGGSEK	1	Unmodified	2003.0324	0.032369346	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		2	2	85.246	84.442	2	5.212E-43	74403	160511_QHF_FH_JSI11i_2	161.76	143.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30313000	6442100	23871000	9378300	0	9378300	0	0	0	7343200	0	7343200	13591000	6442100	7149300	40003	2947	37640	245345;245346;245347;245348;245349;245350	329185;329186;329187;329188;329189;329190	329190			6	
NVFIIGATNRPDIIDPAILRPGR	0	Unmodified	2517.418	0.4179755	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									4	1	3			84.781	78.378	3;4	9.6669E-28	42284	160513_QHF_FH_JSI9Kac_6	153.19	125.87			0.63568	0.68055	42.208	4	3	Median	1.0451	0.88836	NaN	1	0	Median	0.36368	0.42897	46.529	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	759860000	485890000	273960000	144890000	57540000	87354000	614960000	428350000	186610000	0	0	0	0	0	0	40004	1846	37641	245351;245352;245353;245354	329191;329192;329193;329194	329191			4	
NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK	1	Unmodified	4055.2572	0.25717133	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	3	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	96.364	88.876	4;5	1.8331E-41	52397	160513_QHF_FH_JSI10Kac_6	142.37	125.71			1.0481	1.113	28.858	4	0	Median	1.0944	0.92935	NaN	1	0	Median	1.2315	1.469	28.103	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97036	1.0287	NaN	1	0	Median	1592800000	745190000	847610000	472390000	218440000	253950000	807370000	395330000	412040000	0	0	0	313040000	131420000	181620000	40005	1846	37642	245355;245356;245357;245358	329195;329196;329197;329198;329199;329200	329200			6	
NVFLLGFIPAK	1	Unmodified	1217.7172	0.7172302	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.56		6						1	11	5	3	6	4	95.431	89.577	2;3	1.3748E-13	89173	160511_QHF_FH_JSI11i_2	134.91	94.865			0.67092	0.7494	167.53	12	8	Median	0.95857	0.82497	272.55	3	1	Median	0.21392	0.25659	155.77	3	2	Plateau	0.76777	0.77804	163.84	3	2	Median	0.20507	0.22902	125.52	3	3	Median	5161900000	2791600000	2370300000	1190800000	555370000	635400000	1286900000	690880000	596040000	1949100000	1035400000	913730000	735130000	509950000	225180000	40006	3904	37643	245359;245360;245361;245362;245363;245364;245365;245366;245367;245368;245369;245370;245371;245372;245373;245374;245375;245376	329201;329202;329203;329204;329205;329206;329207;329208;329209;329210;329211;329212;329213;329214;329215;329216;329217;329218	329210			18	
NVFNALIR	0	Unmodified	945.5396	0.53960019	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							3	2	3	2	63.907	62.931	2	0.00071748	55449	160511_QHF_FH_JSI9i_2	94.407	71.098			2.1146	2.2689	103.53	7	7	Median	3.5748	3.0809	NaN	1	1	Median	0.89677	1.0969	123.65	2	2	Median	0.93054	0.94318	124.14	2	2	Median	0.96346	1.0876	152.37	2	2	Median	1281900000	645870000	636040000	143800000	37130000	106670000	331820000	198570000	133250000	529080000	276090000	252990000	277200000	134070000	143130000	40007	2198	37644	245377;245378;245379;245380;245381;245382;245383;245384;245385;245386	329219;329220;329221;329222;329223;329224;329225;329226;329227;329228;329229	329225			11	
NVFNPEAFKPGNTHK	2	Unmodified	1698.8478	0.84780346	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.673	43.557	4	0.00085063	38334	160511_QHF_FH_JSI11i_3	55.186	43.746			0.79517	0.77546	37.416	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0762	1.0103	NaN	1	0	Median	0.58752	0.59519	NaN	1	1	Median	93403000	49471000	43931000	0	0	0	0	0	0	58663000	27692000	30971000	34740000	21780000	12960000	40008	2564	37645	245387;245388	329230;329231	329230			2	
NVFQLEQAFVLSK	1	Unmodified	1521.8191	0.81912909	1834	P54802	NAGLU	Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	99.831	99.681	2	0.00045489	88169	160511_QHF_FH_JSI10i_2	91.937	76.366			1.3582	1.3309	25.146	3	3	Median	NaN	NaN	NaN	0	0	Median	0.78088	0.91389	NaN	1	1	Median	1.3582	1.3309	NaN	1	1	Median	1.4085	1.4729	NaN	1	1	Median	24368000	8276900	16091000	0	0	0	6049300	1576200	4473000	11227000	4196800	7030200	7092000	2503800	4588100	40009	1834	37646	245389;245390;245391	329232;329233;329234	329234			3	
NVFSSSGTSFSGR	0	Unmodified	1331.6106	0.61059288	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	3.8		5	4					1		2	2	3	3	40.447	39.869	2	1.91E-05	35120	160511_QHF_FH_JSI10i_2	118.9	104.03			0.90533	0.91702	33.533	9	7	Median	1.2125	1.0401	NaN	1	0	Median	0.7555	0.92313	61.677	2	2	Median	0.90533	0.84876	34.725	3	3	Median	0.85624	0.91702	33.358	3	2	Median	363760000	182570000	181180000	55728000	21870000	33857000	120920000	69264000	51656000	111760000	54323000	57434000	75354000	37118000	38237000	40010	1684	37647	245392;245393;245394;245395;245396;245397;245398;245399;245400;245401	329235;329236;329237;329238;329239;329240;329241;329242;329243	329241			9	
NVFSTFR	0	Unmodified	869.43955	0.43955179	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.528	44.137	2	0.030977	37726	160511_QHF_FH_JSI12i_2	53.679	28.681			0.40942	0.45558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40942	0.45558	NaN	1	1	Median	36636000	24721000	11915000	0	0	0	0	0	0	0	0	0	36636000	24721000	11915000	40011	3036	37648	245402	329244	329244			1	
NVFTMTAK	1	Unmodified	910.45824	0.45823833	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			39.16	38.154	2	0.016513	33332	160511_QHF_FH_JSI9i_2	59.245	41.21			0.50794	0.5209	16.774	2	2	Median	0.53659	0.46264	NaN	1	1	Median	0.48082	0.58649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194700000	134270000	60430000	79594000	52525000	27069000	115100000	81741000	33362000	0	0	0	0	0	0	40012	2108	37649	245403;245404	329245;329246	329245			2	
NVGCLQEALQLATSFAQLR	0	Unmodified	2118.0892	0.089172718	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.66	102.59	3	0.00038582	90468	160511_QHF_FH_JSI9i_2	57.414	41.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40013	1664	37650	245405	329247	329247			1	
NVGFESDTGGAFK	1	Unmodified	1327.6044	0.60444487	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.562	45.171	2	0.00040394	38586	160511_QHF_FH_JSI12i_2	94.363	79.696			0.67545	0.75249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67545	0.75249	NaN	1	1	Median	55347000	35437000	19910000	0	0	0	0	0	0	0	0	0	55347000	35437000	19910000	40014	5382	37651	245406	329248	329248			1	
NVGHNIYILAHQLAR	0	Unmodified	1717.9376	0.93762152	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	73.625	64.498	4	0.02786	35025	160513_QHF_FH_JSI11Kac_6	30.961	21.173			1.0765	1.2202	13.75	3	0	Plateau	1.409	1.2202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2817	1.2316	NaN	1	0	Median	0.90419	0.96622	NaN	1	0	Median	48430000	23321000	25109000	13419000	5849800	7569500	0	0	0	16990000	8296400	8693800	18021000	9174900	8845800	40015	2549	37652	245407;245408;245409	329249;329250	329249			0	
NVGIFLK	1	Unmodified	789.47487	0.47487467	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6.38		2	2						2	1		3	2	59.637	56.092	2	0.029706	49472	160511_QHF_FH_JSI9i_2	54.525	38.371			18.822	19.793	220.66	6	6	Median	72.184	60.936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.8803	2.8433	258.63	3	3	Median	23.081	24.801	155.87	2	2	Median	277260000	37798000	239460000	53657000	679940	52977000	0	0	0	194250000	35717000	158530000	29359000	1401500	27957000	40016	5658	37653	245410;245411;245412;245413;245414;245415	329251;329252;329253;329254;329255;329256	329253			6	
NVGLDIEAEVPAVK	1	Unmodified	1452.7824	0.78240924	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.829	8	4	4							3	4	3	6	76.313	75.701	2;3	2.3586E-15	68659	160511_QHF_FH_JSI10i_1	167.44	133.56			1.0232	1.0255	11.702	14	4	Median	1.1865	1.027	3.6754	3	0	Plateau	0.81459	0.96968	7.1403	4	1	Median	1.0574	1.0225	14.274	2	0	Median	1.0875	1.1687	16.527	5	3	Median	1445700000	725780000	719870000	132250000	57348000	74904000	592570000	320790000	271780000	299100000	138520000	160580000	421730000	209120000	212610000	40017	1721	37654	245416;245417;245418;245419;245420;245421;245422;245423;245424;245425;245426;245427;245428;245429;245430;245431	329257;329258;329259;329260;329261;329262;329263;329264;329265;329266;329267;329268;329269;329270;329271;329272;329273;329274;329275;329276;329277;329278;329279;329280;329281;329282;329283	329273			27	
NVGNAILYETVLTIMDIK	1	Unmodified	2006.0758	0.075814065	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.73		9	1						6	4	6	3	3	102.33	99.049	2;3	1.833E-23	55700	160513_QHF_FH_JSI10Kac_6	204.17	161.54			1.035	1.1081	40.574	14	7	Median	0.90337	0.77389	32.81	3	2	Median	0.95357	1.1452	17.611	6	3	Median	1.0586	1.0691	8.9702	3	1	Plateau	0.55973	0.61055	102.98	2	1	Median	784720000	396580000	388140000	123450000	53650000	69804000	368890000	194630000	174250000	204500000	90556000	113950000	87873000	57737000	30136000	40018	369	37655	245432;245433;245434;245435;245436;245437;245438;245439;245440;245441;245442;245443;245444;245445;245446;245447	329284;329285;329286;329287;329288;329289;329290;329291;329292;329293;329294;329295;329296;329297;329298;329299;329300;329301;329302;329303;329304;329305	329304			22	
NVGQFSGFPFEK	1	Unmodified	1355.651	0.65100113	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.95	3	6	2					1	1	3	4	3	3	76.671	72.779	2	4.0169E-08	64186	160511_QHF_FH_JSI12i_2	115.57	60.851			1.0383	1.1058	49.002	6	4	Median	0.81621	0.66052	NaN	1	0	Median	0.90878	1.0673	92.494	2	1	Median	1.2347	1.2584	NaN	1	1	Median	1.08	1.1746	26.818	2	2	Median	2157700000	811780000	1345900000	44223000	21304000	22919000	187280000	55997000	131280000	1377600000	489720000	887880000	548560000	244760000	303800000	40019	1444	37656	245448;245449;245450;245451;245452;245453;245454;245455;245456;245457;245458;245459;245460	329306;329307;329308;329309;329310;329311;329312;329313;329314;329315;329316;329317;329318;329319;329320	329310			15	
NVGSAGVTVVIVRDDLLGFALR	0	Unmodified	2270.2747	0.2746653	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.101	89.38	3	0.012951	51512	160513_QHF_FH_JSI10Kac_6	52.162	40.034			0.41691	0.49108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41691	0.49108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79183000	52330000	26853000	0	0	0	79183000	52330000	26853000	0	0	0	0	0	0	40020	5697	37657	245461	329321	329321			1	
NVHDLLAK	1	Unmodified	908.50797	0.50796571	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	29.433	28.629	2;3	0.013015	25087	160511_QHF_FH_JSI10i_2	44.203	28.541			0.19889	0.21878	122.64	4	4	Median	0.13007	0.11197	NaN	1	1	Median	0.19722	0.2411	NaN	1	1	Median	0.61627	0.60806	158.3	2	2	Median	NaN	NaN	NaN	0	0	Median	180250000	129670000	50584000	19908000	18555000	1353200	44698000	32855000	11843000	99472000	62084000	37388000	16174000	16174000	0	40021	3921	37658	245462;245463;245464;245465;245466	329322;329323;329324;329325;329326;329327	329327			6	
NVHFASVVNSFIEK	1	Unmodified	1589.8202	0.82019173	5021	Q9NV35	NUDT15	Probable 8-oxo-dGTP diphosphatase NUDT15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		78.726	78.051	3	0.0006831	69114	160511_QHF_FH_JSI11i_3	66.246	39.148			2.2704	2.3786	279.16	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28536	0.33041	NaN	1	1	Median	18.064	17.124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45515000	15301000	30214000	0	0	0	14614000	12783000	1830400	30901000	2517500	28384000	0	0	0	40022	5021	37659	245467;245468	329328;329329	329328			2	
NVHGINFVSPVR	0	Unmodified	1337.7204	0.7204181	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	5.06		8	7						3	3	6	6	3	51.605	49.536	2;3	4.6306E-06	42166	160511_QHF_FH_JSI12i_3	138.25	114.48			0.47049	0.46974	101.81	18	17	Median	0.5343	0.46799	125.18	3	3	Median	0.77658	0.89265	95.377	6	6	Median	0.47533	0.46853	112.31	6	5	Median	0.33113	0.36549	123.36	3	3	Median	2774800000	1507100000	1267700000	267700000	166620000	101080000	991870000	503740000	488130000	1046200000	555640000	490520000	469100000	281110000	187990000	40023	1806	37660	245469;245470;245471;245472;245473;245474;245475;245476;245477;245478;245479;245480;245481;245482;245483;245484;245485;245486	329330;329331;329332;329333;329334;329335;329336;329337;329338;329339;329340;329341;329342;329343;329344;329345;329346;329347	329346			18	
NVHLAPGWLMQLEK	1	Unmodified	1634.8603	0.8602824	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	2	2	83.197	82.918	2;3	3.5017E-06	71561	160511_QHF_FH_JSI12i_3	125.28	109.15			1.0736	1.0755	109.44	6	6	Median	NaN	NaN	NaN	0	0	Median	1.312	1.5764	189.59	2	2	Median	1.2655	1.1799	140.68	2	2	Median	1.0736	1.0755	50.544	2	2	Median	220390000	113090000	107290000	0	0	0	43306000	23734000	19572000	116280000	61578000	54705000	60797000	27779000	33017000	40024	2517	37661	245487;245488;245489;245490;245491;245492	329348;329349;329350;329351;329352;329353	329352			6	
NVHMNDNVLHSAFEVGAR	0	Unmodified	2008.9537	0.95374187	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2.33	0.471		2	1								1	1	1	58.042	57.494	3	0.042259	49213	160511_QHF_FH_JSI12i_3	22.231	7.0243			1.6911	1.8547	28.354	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.938	2.3238	NaN	1	0	Median	2.4703	2.4978	NaN	1	0	Median	1.4783	1.4802	NaN	1	0	Median	262900000	96329000	166570000	0	0	0	91522000	29904000	61618000	79810000	23353000	56458000	91566000	43072000	48494000	40025	2460	37662	245493;245494;245495	329354	329354			1	
NVHSEDFENR	0	Unmodified	1245.5374	0.53742794	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	12.097	11.538	2;3	0.0019108	9020	160511_QHF_FH_JSI12i_2	75.378	66.164			2.1901	2.2607	32.379	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6023	2.6222	NaN	1	1	Median	1.5038	1.6264	23.997	2	2	Median	51227000	14455000	36772000	0	0	0	0	0	0	18719000	2801700	15917000	32508000	11653000	20855000	40026	4679	37663	245496;245497;245498;245499;245500	329355;329356;329357;329358;329359	329355			5	
NVIAALNSR	0	Unmodified	956.54033	0.54032847	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	38.79	37.971	2	0.0020825	33188	160511_QHF_FH_JSI9i_2	75.378	29.66			0.63554	0.53575	108.01	3	3	Median	0.63554	0.53575	NaN	1	1	Median	0.30834	0.38085	NaN	1	1	Median	2.8339	2.865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	283120000	137280000	145840000	72435000	33211000	39224000	100890000	64985000	35904000	109790000	39082000	70712000	0	0	0	40027	3562	37664	245501;245502;245503;245504	329360;329361;329362;329363	329361			4	
NVIAPLMTR	0	Unmodified	1013.5692	0.56918576	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	54.436	53.483	2	0.0020074	46876	160511_QHF_FH_JSI9i_2	66.568	47.785			1.0373	1.1972	49.307	5	2	Median	0.95408	0.81428	NaN	1	0	Median	0.71268	0.88484	91.169	2	2	Median	1.2245	1.2149	NaN	1	0	Median	1.0373	1.1972	NaN	1	0	Median	648500000	329550000	318950000	87638000	45633000	42005000	221720000	121690000	100030000	204660000	96194000	108470000	134480000	66031000	68450000	40028	2194	37665	245505;245506;245507;245508;245509	329364;329365;329366;329367;329368;329369;329370	329366			7	
NVIAVLEEFMK	1	Unmodified	1291.6846	0.68460945	4826	Q9HAS0	C17orf75	Protein Njmu-R1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	102.91	102.8	2	4.3265E-06	88717	160511_QHF_FH_JSI12i_2	122.96	95.847			0.15371	0.16848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15371	0.16848	NaN	1	1	Median	36771000	34936000	1834400	0	0	0	14303000	14303000	0	0	0	0	22468000	20634000	1834400	40029	4826	37666	245510;245511	329371;329372	329371			2	
NVIFEISPTEEVGDFEVK	1	Unmodified	2051.0099	0.0099025694	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.492	7	10								1	5	5	6	99.524	99.391	2;3	8.7024E-23	89752	160511_QHF_FH_JSI10i_1	198.78	178.77			0.95949	0.93903	21.572	14	2	Median	1.308	1.1526	NaN	1	0	Median	0.71921	0.8622	24.367	4	0	Median	1.0095	1.0119	15.573	4	0	Median	0.838	0.86377	24.725	5	2	Median	513500000	283640000	229860000	16715000	8105900	8609400	183900000	105460000	78444000	126610000	65147000	61463000	186270000	104930000	81345000	40030	1600	37667	245512;245513;245514;245515;245516;245517;245518;245519;245520;245521;245522;245523;245524;245525;245526;245527;245528	329373;329374;329375;329376;329377;329378;329379;329380;329381;329382;329383;329384;329385;329386;329387;329388;329389;329390;329391;329392;329393;329394;329395;329396;329397;329398;329399;329400;329401;329402;329403;329404;329405;329406;329407;329408;329409;329410;329411;329412	329394			40	
NVIGLQMGTNR	0	Unmodified	1201.6237	0.62374052	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.56	6.34		4	4				2	4	4	4	5	5	4	51.838	45.786	2	1.69E-18	39391	160511_QHF_FH_JSI12i_2	166.34	134.12			1.0936	1.1239	14.931	18	1	Median	1.6572	1.3535	16.806	4	0	Linear	0.8971	1.0765	12.241	5	1	Median	1.3478	1.2858	5.7072	5	0	Median	0.92615	1.0261	17.219	4	0	Median	13332000000	6601900000	6730000000	2212600000	1005100000	1207500000	2950200000	1630500000	1319700000	4714300000	2287600000	2426700000	3454800000	1678800000	1776100000	40031	1470	37668	245529;245530;245531;245532;245533;245534;245535;245536;245537;245538;245539;245540;245541;245542;245543;245544;245545;245546	329413;329414;329415;329416;329417;329418;329419;329420;329421;329422;329423;329424;329425;329426;329427;329428;329429;329430;329431;329432;329433;329434;329435;329436;329437	329416			25	
NVIGLQMGTNR	0	Oxidation (M)	1217.6187	0.61865515	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.16		3					4	4	5	2	5	4	5	36.774	29.13	2	2.5887E-06	25901	160511_QHF_FH_JSI10i_2	112.71	98.042			0.99213	1.0413	19.738	14	4	Median	1.1952	0.99598	1.9232	2	0	Median	0.85636	1.0217	15.134	4	1	Median	1.2514	1.2224	17.496	3	1	Median	0.96004	1.0577	29.173	5	2	Median	761300000	348880000	412420000	21673000	9686200	11987000	200190000	92547000	107650000	265000000	112570000	152430000	274440000	134080000	140360000	40032	1470	37668	245547;245548;245549;245550;245551;245552;245553;245554;245555;245556;245557;245558;245559;245560;245561;245562	329438;329439;329440;329441;329442;329443;329444;329445;329446;329447;329448;329449;329450;329451;329452;329453;329454;329455;329456;329457;329458;329459;329460;329461	329454		1140	24	
NVIHASDSVEGAQR	0	Unmodified	1481.7223	0.7222686	161	O00746	NME4	Nucleoside diphosphate kinase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	18.895	18.224	2;3	0.00090443	14836	160511_QHF_FH_JSI11i_2	100.55	85.581			3.0169	2.989	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0169	2.989	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61442000	39725000	21716000	4487700	4487700	0	9788000	9788000	0	42678000	20961000	21716000	4488400	4488400	0	40033	161	37669	245563;245564;245565;245566;245567	329462;329463;329464;329465;329466;329467	329465			6	
NVIHKIFSK	2	Acetyl (K)	1126.6499	0.64987892	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	59.465	50.218	2;3	0.019806	27527	160513_QHF_FH_JSI10Kac_6	45.879	33.303			0.85121	0.92342	43.192	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57183	0.68039	NaN	1	1	Median	1.2671	1.2532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109260000	20426000	88829000	0	0	0	66548000	13434000	53113000	32309000	6992000	25317000	10398000	0	10398000	40034	1867	37670	245568;245569;245570;245571;245572	329468;329469;329470;329471;329472	329472	1888		5	
NVIHPFLSR	0	Unmodified	1081.6033	0.60326308	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.266		1	12							4	4	2	3	41.375	40.419	2;3	0.00068907	33060	160511_QHF_FH_JSI9i_3	86.744	65.444			0.59189	0.51796	87.023	13	13	Median	1.1953	0.98141	101.27	4	4	Median	0.91215	1.0459	94.098	4	4	Median	0.90854	0.86773	101.42	2	2	Median	0.48455	0.48475	99.242	3	3	Median	3547400000	1604100000	1943300000	922570000	351490000	571080000	966910000	412820000	554090000	597370000	296940000	300430000	1060600000	542840000	517720000	40035	1283	37671	245573;245574;245575;245576;245577;245578;245579;245580;245581;245582;245583;245584;245585	329473;329474;329475;329476;329477;329478;329479;329480;329481;329482;329483;329484;329485	329480			13	
NVIIWGNHSSTQYPDVNHAK	1	Unmodified	2279.1083	0.10832826	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		15	20						15	12	13	12	13	53.964	50.418	2;3;4;5	7.4962E-55	44024	160511_QHF_FH_JSI11i_2	215.88	191.58			0.90234	0.98144	74.54	45	29	Median	1.4422	1.1804	94.017	10	7	Median	0.8356	0.97395	53.559	13	8	Median	1.0801	1.0355	63.672	11	7	Median	0.86849	0.90208	89.043	11	7	Median	25530000000	12524000000	13006000000	2106200000	853780000	1252400000	4400300000	2300200000	2100000000	10911000000	5339100000	5572300000	8112200000	4031300000	4080900000	40036	1503	37672	245586;245587;245588;245589;245590;245591;245592;245593;245594;245595;245596;245597;245598;245599;245600;245601;245602;245603;245604;245605;245606;245607;245608;245609;245610;245611;245612;245613;245614;245615;245616;245617;245618;245619;245620;245621;245622;245623;245624;245625;245626;245627;245628;245629;245630;245631;245632;245633;245634;245635	329486;329487;329488;329489;329490;329491;329492;329493;329494;329495;329496;329497;329498;329499;329500;329501;329502;329503;329504;329505;329506;329507;329508;329509;329510;329511;329512;329513;329514;329515;329516;329517;329518;329519;329520;329521;329522;329523;329524;329525;329526;329527;329528;329529;329530;329531;329532;329533;329534;329535;329536;329537;329538;329539;329540;329541;329542;329543;329544;329545;329546;329547;329548;329549;329550;329551;329552;329553;329554;329555;329556;329557;329558;329559;329560;329561;329562;329563;329564;329565;329566;329567;329568;329569;329570;329571;329572;329573;329574;329575;329576;329577;329578;329579;329580;329581;329582;329583;329584;329585	329535			100	
NVIIWGNHSSTQYPDVNHAKVK	2	Acetyl (K)	2548.2823	0.28226988	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.27	56.631	3	0.0096935	30702	160513_QHF_FH_JSI11Kac_6	50.883	37.428			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2659700	2659700	0	0	0	0	0	0	0	2659700	2659700	0	0	0	0	40037	1503	37673	245636	329586	329586	1524		1	
NVILEVNEAVLTESMIQNLIK	1	Unmodified	2369.2876	0.28759775	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		103.34	103.26	3	4.3486E-18	91044	160511_QHF_FH_JSI11i_2	145.52	114.16			1.1699	1.1476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1699	1.1476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68486000	30873000	37614000	13093000	0	13093000	0	0	0	55393000	30873000	24520000	0	0	0	40038	432	37674	245637;245638	329587;329588	329588			2	
NVIPALELVEPIK	1	Unmodified	1433.8494	0.84936659	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	99.374	99.23	2	8.5669E-05	87905	160511_QHF_FH_JSI10i_2	100.72	90.199			0.82213	0.91619	6.1134	3	0	Plateau	1.2115	1.0315	NaN	1	0	Median	0.7741	0.94743	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82213	0.91619	NaN	1	0	Median	95872000	47592000	48280000	29817000	12519000	17298000	31902000	17586000	14317000	0	0	0	34152000	17487000	16665000	40039	873	37675	245639;245640;245641	329589;329590;329591	329591			2	
NVISSSSFK	1	Unmodified	967.49746	0.4974606	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.05	2	5	2					2		4	3	3	1	31.176	28.542	2	0.0018863	24985	160511_QHF_FH_JSI10i_2	76.064	56.587			1.2396	1.2141	59.244	10	8	Median	2.1358	1.8434	68.21	4	4	Median	0.78421	0.93772	91.778	2	2	Median	1.2374	1.2514	9.1866	3	1	Plateau	0.47476	0.53637	NaN	1	1	Median	1001800000	528920000	472910000	278390000	131770000	146620000	225580000	133860000	91724000	344260000	175940000	168320000	153590000	87345000	66246000	40040	2349	37676	245642;245643;245644;245645;245646;245647;245648;245649;245650;245651;245652	329592;329593;329594;329595;329596;329597;329598;329599;329600;329601	329601			10	
NVITEPIYPEVVHMFAVNMFR	0	Unmodified	2505.2549	0.25485784	2394	Q13362	PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	97.101	88.682	3	1.1451E-21	50232	160513_QHF_FH_JSI9Kac_6	136.04	123.49			1.179	1.2195	15.183	4	0	Median	1.5013	1.2598	NaN	1	0	Median	1.2408	1.4883	NaN	1	0	Median	1.1042	1.0327	NaN	1	0	Median	1.1204	1.1804	NaN	1	0	Median	892330000	399590000	492730000	206710000	80568000	126140000	307130000	155150000	151980000	191550000	84619000	106930000	186940000	79254000	107690000	40041	2394	37677	245653;245654;245655;245656	329602;329603	329602			2	
NVIVLQTVLQEVR	0	Unmodified	1509.8879	0.88787736	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	2	1	1	1	94.871	88.76	2	1.8267E-06	46400	160513_QHF_FH_JSI9Kac_6	131.43	102.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108620000	22359000	86263000	36834000	0	36834000	0	0	0	22359000	22359000	0	49429000	0	49429000	40042	5523	37678	245657;245658;245659;245660;245661	329604;329605;329606;329607;329608	329607			5	
NVIVNGLVLASDGQK	1	Unmodified	1525.8464	0.84640648	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43		6	1					7		3	5	4	2	76.153	70.504	2;3	1.0634E-07	59459	160511_QHF_FH_JSI9i_3	96.103	77.791			0.80595	0.89493	65.068	12	5	Median	0.58198	0.50281	70.651	2	1	Median	0.72812	0.89351	66.095	5	3	Median	1.2468	1.2455	60.229	4	1	Median	0.88664	0.99769	NaN	1	0	Median	654740000	347100000	307640000	79320000	41374000	37946000	200310000	106130000	94181000	236840000	128640000	108200000	138270000	70957000	67315000	40043	1520	37679	245662;245663;245664;245665;245666;245667;245668;245669;245670;245671;245672;245673;245674;245675	329609;329610;329611;329612;329613;329614;329615;329616;329617;329618;329619;329620;329621;329622;329623;329624	329612			16	
NVKFPDEDEILEK	2	Unmodified	1574.7828	0.78280317	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	61.728	60.414	3	0.023739	51873	160511_QHF_FH_JSI12i_2	34.444	21.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40044	1169	37680	245676	329625	329625			1	
NVKPDQWVK	2	Unmodified	1112.5978	0.59784335	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	1	3		27.791	27.181	2;3	0.00025086	22655	160511_QHF_FH_JSI11i_2	123.86	99.084			0.82819	0.87763	172.33	4	4	Median	NaN	NaN	NaN	0	0	Median	3.1227	3.876	NaN	1	1	Median	0.21965	0.22009	169.58	3	3	Median	NaN	NaN	NaN	0	0	Median	306460000	184950000	121510000	20809000	20809000	0	40267000	8303100	31964000	245380000	155840000	89545000	0	0	0	40045	1862	37681	245677;245678;245679;245680;245681	329626;329627;329628;329629;329630;329631	329628			6	
NVKPEDVK	2	Unmodified	927.50255	0.50254598	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	1			By MS/MS		2	0		2										2		8.7179	8.5208	2;3	0.053578	6143	160511_QHF_FH_JSI11i_2	82.75	53.601			0.27892	0.2829	70.906	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27892	0.2829	70.906	2	2	Median	NaN	NaN	NaN	0	0	Median	367960000	273980000	93984000	0	0	0	0	0	0	367960000	273980000	93984000	0	0	0	40046	2299	37682	245682;245683	329632;329633	329633			2	
NVLCSACSGQGGK	1	Unmodified	1336.5864	0.58636874	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			17.362	17.109	2	0.0011546	14644	160511_QHF_FH_JSI10i_1	62.408	42.104			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25786000	0	25786000	0	0	0	25786000	0	25786000	0	0	0	0	0	0	40047	456	37683	245684;245685;245686	329634;329635;329636	329635			3	
NVLEALER	0	Unmodified	942.51345	0.51344502	5800				yes	yes	0	0	0	0			By MS/MS		2	0		1										1		38.542	38.09	2	0.016966	32529	160511_QHF_FH_JSI11i_2	58.917	4.1409	+		1.1642	1.1741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1642	1.1741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	123000000	56135000	66860000	0	0	0	0	0	0	123000000	56135000	66860000	0	0	0	40048	5800	37684	245687	329637	329637			1	
NVLFSHLDDNER	0	Unmodified	1457.6899	0.68990583	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.322	45.372	2	0.00020019	39000	160511_QHF_FH_JSI11i_2	79.82	60.034			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40049	977	37685	245688;245689	329638;329639	329639			2	
NVLGHMQQGGAPSPFDR	0	Unmodified	1809.8581	0.85805057	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		9	12							4	6	6	5	50.573	49.905	2;3	4.1289E-11	44093	160511_QHF_FH_JSI11i_3	132.51	114.59			0.7159	0.67576	79.402	17	17	Median	1.0156	0.86617	72.879	3	3	Median	0.34048	0.41079	109.19	5	5	Median	0.7159	0.67576	77.417	5	5	Median	0.88623	0.88468	78.267	4	4	Median	2302600000	1345400000	957260000	286780000	173080000	113700000	524830000	370530000	154300000	899150000	466790000	432360000	591860000	334960000	256900000	40050	2176	37686	245690;245691;245692;245693;245694;245695;245696;245697;245698;245699;245700;245701;245702;245703;245704;245705;245706;245707;245708;245709;245710	329640;329641;329642;329643;329644;329645;329646;329647;329648;329649;329650;329651;329652;329653;329654;329655;329656;329657;329658;329659;329660;329661;329662	329643			23	
NVLGHMQQGGAPSPFDRNFGTK	1	Unmodified	2357.1335	0.13349715	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				57.433	56.423	4	0.051848	49572	160511_QHF_FH_JSI9i_2	20.439	11.839			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22511000	0	22511000	22511000	0	22511000	0	0	0	0	0	0	0	0	0	40051	2176	37687	245711	329663	329663			1	
NVLGHMQQGGSPTPFDR	0	Unmodified	1839.8686	0.86861526	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.41	3.18		6	10						1	2	6	5	4	48.46	47.164	2;3	1.3218E-23	41756	160511_QHF_FH_JSI10i_2	144.27	126			0.92565	0.97955	77.135	9	9	Median	NaN	NaN	NaN	0	0	Median	0.8105	0.92496	55.939	3	3	Median	1.3678	1.2875	137.1	2	2	Median	0.95608	1.006	86.045	4	4	Median	1072600000	489160000	583480000	1817700	0	1817700	198930000	105800000	93135000	426380000	169450000	256930000	445500000	213900000	231600000	40052	897	37688	245712;245713;245714;245715;245716;245717;245718;245719;245720;245721;245722;245723;245724;245725;245726;245727;245728	329664;329665;329666;329667;329668;329669;329670;329671;329672;329673;329674;329675;329676;329677;329678;329679;329680;329681	329675			18	
NVLGHMQQGGSPTPFDR	0	Oxidation (M)	1855.8635	0.86352988	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	35.997	35.851	3	0.031077	30345	160511_QHF_FH_JSI12i_3	34.395	30.004			0.43179	0.43729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43179	0.43729	NaN	1	1	Median	28649000	23460000	5188900	0	0	0	0	0	0	0	0	0	28649000	23460000	5188900	40053	897	37688	245729	329682	329682			1	
NVLGLVPQALPK	1	Unmodified	1247.7602	0.76015765	3504	Q8N1G0	ZNF687	Zinc finger protein 687	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.019	80.236	2	0.0019249	70773	160511_QHF_FH_JSI9i_2	72.928	67.963			2.0758	1.9648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0758	1.9648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38206000	4263100	33943000	6003700	0	6003700	4053900	0	4053900	15786000	4263100	11522000	12363000	0	12363000	40054	3504	37689	245730;245731;245732;245733	329683;329684;329685;329686;329687	329685			5	
NVLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMR	0	Unmodified	4150.8571	0.85714723	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		83.703	83.399	4	2.6225E-39	74532	160511_QHF_FH_JSI11i_3	120.56	112.63			1.344	1.1908	3.5362	2	1	Median	1.3987	1.1614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2914	1.221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	292350000	129930000	162430000	25462000	17512000	7950800	0	0	0	266890000	112420000	154470000	0	0	0	40055	1126	37690	245734;245735	329688;329689;329690;329691	329690			4	
NVLHSAR	0	Unmodified	795.43514	0.43513512	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.75	5.93		2	1						1		2	2		5.9508	3.4639	2	0.024826	3334	160511_QHF_FH_JSI11i_3	48.561	12.376			1.1829	1.4092	77.036	3	3	Median	NaN	NaN	NaN	0	0	Median	0.73346	0.88838	65.253	2	2	Median	2.4842	2.586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1705700000	662460000	1043300000	0	0	0	530150000	328970000	201180000	1175600000	333490000	842090000	0	0	0	40056	887	37691	245736;245737;245738;245739	329692;329693;329694;329695	329692			4	
NVLIEVNPQTR	0	Unmodified	1281.7041	0.70409934	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.529	49.549	2	2.4205E-05	42414	160511_QHF_FH_JSI12i_2	100.88	91.082			0.90328	0.87305	14.375	4	2	Median	0.94255	0.81632	NaN	1	1	Median	0.60137	0.72735	NaN	1	1	Median	0.91267	0.93371	NaN	1	0	Median	0.89399	1.0059	NaN	1	0	Median	318930000	168010000	150910000	56295000	23800000	32495000	53559000	32693000	20865000	97510000	50698000	46812000	111560000	60823000	50741000	40057	3916	37692	245740;245741;245742;245743	329696;329697;329698;329699;329700	329697			5	
NVLIFDLGGGTFDVSILTIDDGIFEVK	1	Unmodified	2896.511	0.51099199	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0		By MS/MS	By MS/MS		13.9	2.33				7	4				13		13	11		108.69	101.12	3	1.5641E-13	62858	160513_QHF_FH_JSI10Kac_6	88.001	75.687			0.514	0.61153	22.758	13	10	Median	NaN	NaN	NaN	0	0	Median	0.50266	0.59085	18.918	6	5	Median	0.63228	0.61153	27.116	7	5	Median	NaN	NaN	NaN	0	0	Median	144440000	101970000	42466000	0	0	0	125940000	89573000	36362000	18504000	12399000	6104300	0	0	0	40058	954	37693	245744;245745;245746;245747;245748;245749;245750;245751;245752;245753;245754;245755;245756;245757;245758;245759;245760;245761;245762;245763;245764;245765;245766;245767	329701;329702;329703;329704;329705;329706;329707;329708;329709;329710;329711;329712;329713;329714;329715;329716;329717;329718;329719;329720;329721;329722;329723;329724	329723			24	
NVLIFDLGGGTFDVSILTIEDGIFEVK	1	Unmodified	2910.5266	0.52664205	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	3.62		3	1	16	9	3	1	2	18	3	20	26	4	107.97	100.89	3	1.3519E-48	62058	160513_QHF_FH_JSI10Kac_6	165.47	155.92			0.72569	0.76343	38.114	37	22	Median	0.97555	0.83084	5.8817	2	1	Median	0.64699	0.76343	25.811	15	10	Median	0.72833	0.7098	23.29	17	10	Median	1.2561	1.366	80.392	3	1	Median	470390000	285070000	185320000	21347000	10072000	11275000	376920000	232890000	144020000	62242000	37862000	24380000	9882600	4242400	5640200	40059	985;1827	37694	245768;245769;245770;245771;245772;245773;245774;245775;245776;245777;245778;245779;245780;245781;245782;245783;245784;245785;245786;245787;245788;245789;245790;245791;245792;245793;245794;245795;245796;245797;245798;245799;245800;245801;245802;245803;245804;245805;245806;245807;245808;245809;245810;245811;245812;245813;245814;245815;245816;245817;245818;245819;245820	329725;329726;329727;329728;329729;329730;329731;329732;329733;329734;329735;329736;329737;329738;329739;329740;329741;329742;329743;329744;329745;329746;329747;329748;329749;329750;329751;329752;329753;329754;329755;329756;329757;329758;329759;329760;329761;329762;329763;329764;329765;329766;329767;329768;329769;329770;329771;329772;329773;329774;329775;329776;329777;329778;329779;329780;329781;329782;329783;329784;329785;329786;329787;329788;329789	329771			63	
NVLINKDIR	1	Acetyl (K)	1125.6506	0.6506072	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.7						1	3	3			2	3	2	60.072	49.465	2	0.00014246	26973	160513_QHF_FH_JSI11Kac_5	113.62	53.186			0.23661	0.24145	96.295	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2593	1.5078	9.5261	2	0	Median	0.23618	0.23084	2.5778	2	0	Median	0.21891	0.23776	5.9571	2	0	Median	202970000	142320000	60651000	0	0	0	48936000	22993000	25943000	121350000	93362000	27990000	32682000	25964000	6717400	40060	1297	37695	245821;245822;245823;245824;245825;245826;245827	329790;329791;329792;329793;329794;329795;329796;329797;329798;329799;329800	329797	1228		11	
NVLITDFFGSVR	0	Unmodified	1366.7245	0.72450043	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	99.608	99.457	2	8.2329E-05	87411	160511_QHF_FH_JSI11i_2	93.058	77.443			1.6376	1.7729	118.68	7	6	Median	2.1178	1.7729	NaN	1	1	Median	0.708	0.86349	118.11	2	2	Median	0.47124	0.48285	213.29	2	1	Median	1.0926	1.1966	105.19	2	2	Median	283240000	143320000	139920000	34667000	12014000	22653000	70017000	37543000	32474000	102670000	58876000	43792000	75886000	34889000	40996000	40061	3867	37696	245828;245829;245830;245831;245832;245833;245834	329801;329802;329803;329804;329805;329806;329807;329808;329809;329810;329811;329812	329808			12	
NVLIVEDIIDTGK	1	Unmodified	1427.7872	0.78716026	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	3.28	6	7	2					1		3	4	6	3	97.405	97.221	2	1.0006E-09	86708	160511_QHF_FH_JSI11i_3	112.13	95.901			0.26078	0.30457	260.93	10	10	Median	0.23763	0.20098	309.19	2	2	Median	0.16553	0.20344	340.22	4	4	Median	0.24782	2.2868	256.28	3	3	Plateau	0.052095	0.057972	NaN	1	1	Median	830620000	502450000	328170000	185040000	89793000	95249000	213230000	132790000	80441000	327470000	183650000	143820000	104880000	96217000	8659800	40062	772	37697	245835;245836;245837;245838;245839;245840;245841;245842;245843;245844;245845;245846;245847;245848;245849;245850	329813;329814;329815;329816;329817;329818;329819;329820;329821;329822;329823;329824;329825;329826;329827;329828;329829;329830;329831;329832;329833;329834	329813			22	
NVLIVEDVVGTGR	0	Unmodified	1369.7565	0.75652884	4954	Q9NRG1	PRTFDC1	Phosphoribosyltransferase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.2	6.37		3						2		1		2	2	78.363	73.636	2	0.00049037	66623	160511_QHF_FH_JSI11i_2	90.653	54.709			0.71004	0.62936	37.303	3	3	Median	0.71004	0.62936	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52215	0.55227	NaN	1	1	Median	0.97552	1.1137	NaN	1	1	Median	109040000	57062000	51977000	15977000	9121200	6856000	0	0	0	39137000	25451000	13686000	53924000	22489000	31435000	40063	4954	37698	245851;245852;245853;245854;245855	329835;329836;329837;329838;329839	329837			5	
NVLLDPQLVPGGGASEMAVAHALTEK	1	Unmodified	2616.3581	0.35813694	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	4	10	2							2	5	4	5	100.36	100.23	2;3;4	5.194E-24	87972	160511_QHF_FH_JSI11i_2	117.67	106.19			0.94435	0.9127	26.309	14	7	Median	1.1317	0.93043	19.232	2	0	Median	0.94435	1.1095	25.82	4	3	Median	1.4821	1.4876	31.606	3	1	Plateau	0.77036	0.84975	26.345	5	3	Median	10077000000	5190200000	4886600000	1159800000	485230000	674560000	1808400000	873330000	935070000	2771200000	1442500000	1328700000	4337400000	2389100000	1948300000	40064	1655	37699	245856;245857;245858;245859;245860;245861;245862;245863;245864;245865;245866;245867;245868;245869;245870;245871	329840;329841;329842;329843;329844;329845;329846;329847;329848;329849;329850;329851;329852;329853;329854;329855;329856;329857;329858;329859;329860;329861;329862	329859			22	
NVLLDPQLVPGGGASEMAVAHALTEK	1	Oxidation (M)	2632.3531	0.35305156	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	94.296	93.899	3	5.5266E-10	83164	160511_QHF_FH_JSI10i_2	78.921	71.644			1.0707	1.178	14.259	4	1	Median	1.0641	0.91099	NaN	1	0	Median	0.93908	1.1644	NaN	1	0	Median	1.25	1.2552	NaN	1	1	Median	1.0775	1.1918	NaN	1	0	Median	432070000	225450000	206620000	65788000	33057000	32731000	178570000	99659000	78906000	86254000	40511000	45743000	101460000	52222000	49241000	40065	1655	37699	245872;245873;245874;245875	329863;329864;329865	329865		1339	3	
NVLLEQSGIDILNK	1	Unmodified	1554.8617	0.86172219	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.952	83.224	2	3.4328E-06	74098	160511_QHF_FH_JSI10i_2	132.76	103.29			6.1231	6.3772	151	3	3	Plateau	0.49738	0.43613	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.1231	6.3772	NaN	1	1	Median	5.2292	5.5449	NaN	1	1	Median	83240000	46388000	36853000	17682000	13989000	3693700	19052000	19052000	0	22542000	5829800	16712000	23965000	7517800	16447000	40066	3003	37700	245876;245877;245878;245879	329866;329867;329868;329869	329869			4	
NVLLFLQDK	1	Unmodified	1088.623	0.62299547	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	83.983	83.233	2	0.0020825	73356	160511_QHF_FH_JSI11i_2	75.378	62.341			37.903	34.323	264.1	6	5	Median	24.408	20.077	NaN	1	1	Median	6.6798	8.0922	362.2	2	2	Median	58.86	58.678	NaN	1	1	Median	4.2446	4.7107	411.86	2	1	Median	199050000	91155000	107900000	25972000	604890	25367000	47020000	24558000	22462000	64703000	35389000	29314000	61357000	30603000	30753000	40067	2721	37701	245880;245881;245882;245883;245884;245885;245886	329870;329871;329872;329873;329874;329875;329876;329877	329875			8	
NVLLLGEDGAGK	1	Unmodified	1184.6401	0.6401021	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	55.993	55.133	2	6.4663E-06	47661	160511_QHF_FH_JSI11i_2	119.16	90.068			0.093808	0.093101	79.964	3	3	Median	NaN	NaN	NaN	0	0	Median	0.03873	0.047309	NaN	1	1	Median	0.093808	0.093101	NaN	1	1	Median	0.21329	0.23276	NaN	1	1	Median	132890000	124780000	8110500	0	0	0	21197000	20734000	463290	46519000	42852000	3667400	65177000	61197000	3979800	40068	5725	37702	245887;245888;245889;245890	329878;329879;329880;329881	329880			4	
NVLLNNSEK	1	Unmodified	1029.5455	0.54547343	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.74	9	8	1				5	2		6	7	6	6	24.36	21.348	2	7.0781E-06	18938	160511_QHF_FH_JSI12i_1	109.11	58.406			1.7776	1.7972	97.825	22	22	Median	2.5031	2.0992	124.71	6	6	Median	0.79791	0.93614	102.99	6	6	Median	0.98114	0.96578	93.097	6	6	Median	1.8231	1.9859	89.232	4	4	Median	3439700000	1807500000	1632100000	692270000	360410000	331860000	922550000	560200000	362350000	1010100000	479860000	530210000	814780000	407060000	407720000	40069	2282	37703	245891;245892;245893;245894;245895;245896;245897;245898;245899;245900;245901;245902;245903;245904;245905;245906;245907;245908;245909;245910;245911;245912;245913;245914;245915	329882;329883;329884;329885;329886;329887;329888;329889;329890;329891;329892;329893;329894;329895;329896;329897;329898;329899;329900;329901;329902;329903;329904;329905;329906;329907	329888			26	
NVLLNNSEKMK	2	Acetyl (K)	1330.6915	0.69148574	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	52.33	41.858	2	0.042871	24046	160513_QHF_FH_JSI12Kac_4	44.309	25.529			1.1762	1.2527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1762	1.2527	NaN	1	0	Median	2480200	1274600	1205600	0	0	0	0	0	0	0	0	0	2480200	1274600	1205600	40070	2282	37704	245916	329908	329908			1	
NVLLQFIFLK	1	Unmodified	1233.7485	0.74853033	31;191;3423	A6NKT7;Q7Z3J3;O14715;Q99666;Q8IWJ2	RGPD3;RGPD4;RGPD8;RGPD5;GCC2	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;GRIP and coiled-coil domain-containing protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	97.089	88.465	2	1.1E-13	50097	160513_QHF_FH_JSI11Kac_6	161.02	140.69			0.99985	1.0205	60.111	4	3	Median	0.79017	0.67721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86648	0.84232	NaN	1	0	Median	1.6975	1.8132	54.146	2	2	Median	271400000	161960000	109450000	50237000	33590000	16648000	34083000	34083000	0	99062000	54009000	45053000	88018000	40274000	47744000	40071	31;191;3423	37705	245917;245918;245919;245920;245921	329909;329910;329911;329912;329913;329914	329910			6	
NVLLQFIFLKPGSER	1	Unmodified	1759.9985	0.99849044	31;191;3423	A6NKT7;Q7Z3J3;O14715;Q99666;Q8IWJ2	RGPD3;RGPD4;RGPD8;RGPD5;GCC2	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;GRIP and coiled-coil domain-containing protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		91.636	83.325	3	0.00069565	48343	160513_QHF_FH_JSI10Kac_6	86.641	63.839			1.8228	1.9034	83.89	4	4	Median	4.1779	3.6136	NaN	1	1	Median	1.0785	1.2778	NaN	1	1	Median	1.3545	1.2687	113.72	2	2	Median	NaN	NaN	NaN	0	0	Median	309390000	124420000	184970000	74733000	15749000	58984000	127980000	59671000	68313000	106670000	49000000	57669000	0	0	0	40072	31;191;3423	37706	245922;245923;245924;245925	329915;329916;329917;329918	329918			4	
NVLQGGESTK	1	Unmodified	1031.5247	0.52473799	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	12.852	12.438	2	0.0086819	10284	160511_QHF_FH_JSI12i_1	50.978	34.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40073	2309	37707	245926	329919	329919			1	
NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR	0	Unmodified	3521.7169	0.71687223	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.71	0.452		2	5							3	4			57.686	56.312	3;4	1.1995E-55	46189	160511_QHF_FH_JSI9i_3	151.49	144.57			0.93836	0.94297	13.782	7	3	Median	1.2636	1.0228	7.3544	3	0	Median	0.74649	0.8717	16.651	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	754330000	367160000	387170000	509920000	221420000	288500000	244410000	145730000	98674000	0	0	0	0	0	0	40074	4366	37708	245927;245928;245929;245930;245931;245932;245933	329920;329921;329922;329923;329924;329925;329926;329927;329928;329929;329930;329931	329926			12	
NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR	0	Oxidation (M)	3537.7118	0.71178685	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				52.194	50.604	4	4.0561E-08	41465	160511_QHF_FH_JSI9i_3	53.728	51.697			1.3814	1.1501	NaN	1	0	Median	1.3814	1.1501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46122000	25448000	20674000	46122000	25448000	20674000	0	0	0	0	0	0	0	0	0	40075	4366	37708	245934	329932	329932		2461	1	
NVLSLTNK	1	Unmodified	887.50763	0.50763136	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.05	1	8	1					1	1	5	2	2	3	38.457	36.035	2	0.00093593	31607	160511_QHF_FH_JSI10i_2	116.9	89.766			2.8954	2.6593	152.12	12	12	Median	2.402	2.0478	115.96	5	5	Median	1.2265	1.5085	244.06	2	2	Median	1.2755	1.3065	246.67	2	2	Median	3.4901	3.5902	196.17	3	3	Median	3043400000	1611900000	1431500000	642620000	310220000	332400000	632410000	355550000	276850000	1007500000	547050000	460400000	760900000	399040000	361850000	40076	841	37709	245935;245936;245937;245938;245939;245940;245941;245942;245943;245944;245945;245946	329933;329934;329935;329936;329937;329938;329939;329940;329941;329942;329943;329944	329942			12	
NVLSLTNKGEVFNELVGK	2	Unmodified	1960.0629	0.062941193	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	84.231	83.799	3	1.5113E-06	72864	160511_QHF_FH_JSI12i_3	104.61	95.194			0.18819	0.21754	167.69	5	5	Median	0.11926	0.10555	NaN	1	1	Median	0.18819	0.21754	NaN	1	1	Median	1.7788	1.6731	NaN	1	1	Median	0.85445	0.86561	246.49	2	2	Median	240590000	147980000	92608000	32833000	30487000	2346100	41882000	33196000	8686000	74738000	27663000	47075000	91136000	56635000	34501000	40077	841	37710	245947;245948;245949;245950;245951	329945;329946;329947;329948;329949;329950	329949			6	
NVLTAILLLLR	0	Unmodified	1237.8122	0.81219322	383	O43822	C21orf2	Protein C21orf2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			101.44	94.568	2	8.8989E-12	56432	160513_QHF_FH_JSI10Kac_6	146.11	116.33			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69372000	36768000	32603000	23459000	23459000	0	45913000	13309000	32603000	0	0	0	0	0	0	40078	383	37711	245952;245953;245954;245955	329951;329952;329953;329954	329953			4	
NVLTESAR	0	Unmodified	888.46649	0.46649483	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0			By MS/MS	By MS/MS	6	5.66		2					1					2	1	15.945	15.369	2	0.0035769	12336	160511_QHF_FH_JSI11i_2	71.501	39.031			1.0623	1.1298	4.5684	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0822	1.0939	NaN	1	0	Median	1.0427	1.1669	NaN	1	0	Median	548550000	276690000	271860000	0	0	0	0	0	0	268040000	134230000	133810000	280510000	142460000	138050000	40079	3	37712	245956;245957;245958	329955;329956;329957	329957			3	
NVLTNTQSENER	0	Unmodified	1403.6641	0.66408501	3715	Q8TD16	BICD2	Protein bicaudal D homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	16.11	15.861	2	0.0015898	13628	160511_QHF_FH_JSI12i_1	63.624	57.034			0.74974	0.85249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74974	0.85249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22072000	13250000	8821900	0	0	0	22072000	13250000	8821900	0	0	0	0	0	0	40080	3715	37713	245959;245960;245961	329958;329959;329960	329958			3	
NVLVESEHQVK	1	Unmodified	1280.6725	0.67246486	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	24.145	23.354	2	5.5751E-05	19590	160511_QHF_FH_JSI12i_2	102.61	90.761			1.3918	1.4984	20.152	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2614	1.2994	NaN	1	1	Median	1.5357	1.7278	NaN	1	1	Median	32791000	9994700	22796000	0	0	0	0	0	0	21362000	6446700	14915000	11429000	3548000	7881200	40081	1230	37714	245962;245963;245964	329961;329962;329963	329961			3	
NVLVTIYWLGK	1	Unmodified	1304.7493	0.74925861	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.545	83.218	2	2.537E-10	48411	160513_QHF_FH_JSI10Kac_6	121.73	110.14			0.91852	0.91312	149.09	8	8	Median	0.92627	0.77654	252.59	2	2	Median	0.54459	0.64902	216.32	2	2	Median	0.72434	0.68967	150.65	2	2	Median	1.0534	1.1027	137.63	2	2	Median	1768000000	885510000	882520000	382990000	182600000	200390000	587590000	329130000	258460000	556550000	267400000	289150000	240890000	106380000	134520000	40082	5463	37715	245965;245966;245967;245968;245969;245970;245971;245972	329964;329965;329966;329967;329968;329969;329970;329971	329971			8	
NVMEEGK	1	Unmodified	805.364	0.36400359	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.9748	9.2418	2	0.015081	6766	160511_QHF_FH_JSI9i_1	57.281	33.309			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40083	1438	37716	245973	329972	329972			1	
NVMEQFNPGLR	0	Unmodified	1303.6343	0.63430521	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	58.776	57.836	2	2.6534E-05	50104	160511_QHF_FH_JSI11i_2	99.653	88.163			1.0889	0.94452	24.575	3	0	Median	1.0889	0.94452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1801	1.2162	NaN	1	0	Median	0.69111	0.744	NaN	1	0	Median	218670000	119740000	98930000	42621000	25524000	17097000	0	0	0	93326000	51913000	41413000	82726000	42305000	40420000	40084	5310	37717	245974;245975;245976	329973;329974;329975;329976;329977	329976			5	
NVMLLPVGSADDGAHSQNEK	1	Unmodified	2080.9848	0.98476723	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	56.637	55.858	2;3	9.6765E-09	48395	160511_QHF_FH_JSI11i_2	109.22	101.12			0.67643	0.67408	35.867	5	1	Median	0.79221	0.67408	NaN	1	0	Median	0.44107	0.54152	29.61	2	1	Median	0.67643	0.69341	NaN	1	0	Median	1.0553	1.2035	NaN	1	0	Median	528850000	311170000	217680000	76439000	36289000	40150000	154380000	110130000	44252000	166220000	98488000	67727000	131820000	66268000	65551000	40085	4160	37718	245977;245978;245979;245980;245981;245982;245983	329978;329979;329980;329981;329982;329983;329984;329985;329986;329987;329988	329986			11	
NVMNDAWR	0	Unmodified	1004.4498	0.4497989	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	34.971	34.07	2	0.0035769	30007	160511_QHF_FH_JSI10i_2	71.501	45.117			0.76317	1.0427	11.608	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71178	0.86423	NaN	1	0	Median	1.0319	1.0509	NaN	1	0	Median	0.76317	0.85509	NaN	1	0	Median	447880000	213560000	234320000	0	0	0	121890000	67456000	54435000	229970000	103130000	126850000	96014000	42979000	53035000	40086	1060	37719	245984;245985;245986	329989	329989			1	
NVMSAFGLTDDQVSGPPSAPAEDR	0	Unmodified	2460.1227	0.12271727	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.08	0.276	11	1								3	3	3	3	79.96	79.474	2;3	7.9337E-77	72324	160511_QHF_FH_JSI12i_1	262.59	232.1			0.91777	0.91734	18.885	11	5	Median	1.2673	1.0424	9.4464	2	0	Median	0.71038	0.82932	6.3684	3	1	Plateau	0.92536	0.91306	30.898	3	2	Median	0.91777	0.94207	8.9201	3	2	Median	716590000	385150000	331440000	114380000	52528000	61851000	199940000	122090000	77846000	246610000	137530000	109080000	155660000	73001000	82656000	40087	3876	37720	245987;245988;245989;245990;245991;245992;245993;245994;245995;245996;245997;245998	329990;329991;329992;329993;329994;329995;329996;329997;329998;329999;330000;330001;330002;330003;330004;330005;330006	329996			17	
NVMVSTGR	0	Unmodified	862.43309	0.43308621	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	15.829	14.989	2	0.015892	12114	160511_QHF_FH_JSI12i_2	50.04	33.113			0.78603	0.7748	43.154	2	1	Median	0.66286	0.57104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93209	1.0513	NaN	1	0	Median	193340000	103400000	89941000	79691000	41366000	38325000	0	0	0	0	0	0	113650000	62033000	51616000	40088	1223	37721	245999;246000	330007;330008	330007			2	
NVMWFVVTALDEIAWLFNLR	0	Unmodified	2436.2664	0.2664088	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			108.29	102.57	3	9.2666E-12	60681	160513_QHF_FH_JSI10Kac_6	116.13	101.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40089	4930	37722	246001	330009	330009			1	
NVNIFKFIIPNVVK	2	Unmodified	1643.9763	0.97629844	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1		By MS/MS	By MS/MS		11.7	6.13			1						2		2	1		95.341	90.26	3	0.0011613	48987	160513_QHF_FH_JSI10Kac_6	76.728	70.948			0.15923	0.17374	99.75	2	2	Median	NaN	NaN	NaN	0	0	Median	0.28966	0.35175	NaN	1	1	Median	0.087531	0.085819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126570000	106280000	20292000	0	0	0	105810000	87945000	17865000	20759000	18332000	2427100	0	0	0	40090	761	37723	246002;246003;246004	330010;330011;330012	330012			3	
NVNIFKFIIPNVVK	2	Acetyl (K)	1685.9869	0.98686312	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									9		3	3	3	98.037	89.845	2;3	2.8771E-21	50728	160513_QHF_FH_JSI11Kac_6	149.23	131.8			0.25103	0.2908	54.791	3	3	Median	NaN	NaN	NaN	0	0	Median	0.25103	0.2908	NaN	1	1	Median	0.26869	0.25229	76.613	2	2	Median	NaN	NaN	NaN	0	0	Median	1029200000	973940000	55292000	0	0	0	94018000	92296000	1722500	753220000	699650000	53570000	182000000	182000000	0	40091	761	37723	246005;246006;246007;246008;246009;246010;246011;246012;246013	330013;330014;330015;330016;330017;330018;330019;330020;330021	330015	367;369		9	
NVNIQNFHISWK	1	Unmodified	1498.7681	0.76809658	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3	2	2	5	4	73.034	70.289	2;3	9.2988E-10	63305	160511_QHF_FH_JSI11i_3	120.77	105.4			0.98229	0.99231	29.218	12	4	Median	0.72202	0.6032	40.178	2	1	Median	0.71713	0.84988	17.53	2	1	Median	1.2365	1.1869	11.067	4	1	Median	0.89745	0.9346	15.268	4	1	Median	1733900000	886400000	847510000	253260000	167010000	86251000	96608000	58867000	37741000	700660000	343020000	357640000	683380000	317500000	365880000	40092	1021	37724	246014;246015;246016;246017;246018;246019;246020;246021;246022;246023;246024;246025;246026	330022;330023;330024;330025;330026;330027;330028;330029;330030;330031;330032;330033	330024			12	
NVNNEVHFFENNNFNTIANK	1	Unmodified	2378.104	0.10397116	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.54		8	5						1	2	2	5	5	70.874	69.647	2;3	7.4198E-17	62322	160511_QHF_FH_JSI11i_3	169.43	151.37			1.0869	0.94259	98.964	13	13	Median	0.63052	0.53628	79.759	2	2	Median	0.75697	0.91465	129.55	2	2	Median	0.9685	0.94729	126.75	4	4	Median	1.0869	1.1835	99.579	5	5	Median	2138100000	1174800000	963320000	283510000	186190000	97317000	343780000	214880000	128910000	790100000	434740000	355360000	720730000	339000000	381730000	40093	4535	37725	246027;246028;246029;246030;246031;246032;246033;246034;246035;246036;246037;246038;246039;246040	330034;330035;330036;330037;330038;330039;330040;330041;330042;330043;330044;330045;330046;330047;330048;330049	330036			16	
NVNQEVVDFEK	1	Unmodified	1319.6357	0.635745	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	47.337	46.706	2	1.4161E-05	41583	160511_QHF_FH_JSI9i_1	106.4	91.388			1.3415	1.2606	39.799	6	5	Median	1.6364	1.3459	NaN	1	1	Median	0.67659	0.78756	NaN	1	0	Median	1.3415	1.2965	14.319	2	2	Median	1.676	1.7728	57.471	2	2	Median	2228700000	894710000	1334000000	316260000	113340000	202920000	374930000	227160000	147780000	807800000	302450000	505340000	729720000	251760000	477970000	40094	4448	37726	246041;246042;246043;246044;246045;246046;246047	330050;330051;330052;330053;330054;330055;330056;330057;330058;330059	330058			10	
NVNQSLLELHK	1	Unmodified	1293.7041	0.70409934	794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	44.596	43.636	3	0.00087554	37488	160511_QHF_FH_JSI11i_2	66.498	60.265			1.0613	1.1276	73.067	6	6	Median	2.2782	1.9484	NaN	1	1	Median	1.3742	1.6859	NaN	1	1	Median	0.73333	0.7409	79.487	2	2	Median	0.50611	0.57395	75.415	2	2	Median	517780000	257060000	260720000	55567000	19090000	36478000	82987000	39039000	43948000	242560000	117760000	124800000	136670000	81173000	55496000	40095	794	37727	246048;246049;246050;246051;246052;246053;246054	330060;330061;330062;330063;330064;330065;330066	330065			7	
NVNSNLITWNR	0	Unmodified	1329.6789	0.67894722	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9	7		1							1	1			1	59.208	54.02	2	6.1709E-05	46537	160511_QHF_FH_JSI12i_2	93.561	82.071			0.78876	0.76756	58.595	2	1	Median	1.3645	1.1616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45593	0.50719	NaN	1	0	Median	420970000	286700000	134280000	8160100	2301100	5858900	0	0	0	0	0	0	412810000	284400000	128420000	40096	2692	37728	246055;246056	330067;330068	330067			2	
NVNSNLITWNRVVLLHGPPGTGK	1	Unmodified	2485.3554	0.35537524	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			78.723	72.975	4	0.0071429	39829	160513_QHF_FH_JSI10Kac_6	51.834	37.819			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25249000	25249000	0	0	0	0	25249000	25249000	0	0	0	0	0	0	0	40097	2692	37729	246057	330069	330069			1	
NVNVFKFIIPQIVK	2	Acetyl (K)	1700.0025	0.002513188	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									4			2	2	98.191	88.764	2;3	0.00016922	48689	160513_QHF_FH_JSI12Kac_6	99.844	87.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	585860000	585860000	0	0	0	0	0	0	0	490030000	490030000	0	95830000	95830000	0	40098	864	37730	246058;246059;246060;246061	330070;330071;330072;330073	330072	563		4	
NVNVFKFIIPQIVK	2	Unmodified	1657.9919	0.9919485	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				101.48	101.3	3	0.00030613	82209	160511_QHF_FH_JSI9i_3	66.004	59.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40099	864	37730	246062	330074	330074			1	
NVNVQNFHISWK	1	Unmodified	1484.7524	0.75244651	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.76		8	5						10	4	8	6	5	68.916	64.772	2;3	1.026E-30	35311	160513_QHF_FH_JSI10Kac_6	176.95	132.2			0.86677	1.0645	59.958	23	11	Median	0.35706	0.30159	32.513	4	2	Linear	0.71165	0.81923	72.426	8	6	Median	1.4761	1.3897	15.891	6	1	Median	1.0449	1.1208	39.151	5	2	Median	4795100000	2536600000	2258500000	624100000	443230000	180870000	1288000000	647730000	640250000	1627000000	747730000	879240000	1256100000	697960000	558110000	40100	361	37731	246063;246064;246065;246066;246067;246068;246069;246070;246071;246072;246073;246074;246075;246076;246077;246078;246079;246080;246081;246082;246083;246084;246085	330075;330076;330077;330078;330079;330080;330081;330082;330083;330084;330085;330086;330087;330088;330089;330090;330091;330092;330093;330094;330095;330096;330097;330098;330099;330100;330101;330102;330103;330104;330105;330106	330103			31	
NVPAAREPEVLSTMAIIVNK	1	Unmodified	2151.1722	0.17217407	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	1	3	2	2	86.486	84.757	3	6.4283E-09	77982	160511_QHF_FH_JSI11i_3	110.77	90.678			0.98513	0.97003	16.441	8	3	Median	1.0754	0.93894	NaN	1	0	Median	0.82923	1.0091	18.3	3	2	Plateau	0.99714	0.96827	2.9547	2	0	Median	0.88111	0.92219	4.4544	2	1	Median	1032100000	511940000	520140000	133260000	67810000	65454000	403720000	204520000	199190000	296240000	132720000	163520000	198860000	106890000	91973000	40101	231	37732	246086;246087;246088;246089;246090;246091;246092;246093	330107;330108;330109;330110;330111;330112;330113;330114;330115;330116;330117;330118;330119;330120;330121;330122;330123;330124	330109			18	
NVPEAFK	1	Unmodified	803.41775	0.41775372	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	27.945	27.412	2	0.013281	24479	160511_QHF_FH_JSI12i_1	70.912	43.596			0.46221	0.44776	125.94	5	5	Median	3.9321	3.3403	NaN	1	1	Median	0.19318	0.23412	NaN	1	1	Median	0.46221	0.44776	NaN	1	1	Median	1.027	1.0876	150.9	2	2	Median	341850000	182910000	158940000	60685000	20615000	40070000	81004000	56696000	24308000	76837000	45617000	31220000	123320000	59986000	63337000	40102	3949	37733	246094;246095;246096;246097;246098	330125;330126;330127;330128;330129	330126			5	
NVPFKIVR	1	Acetyl (K)	1013.6022	0.60220045	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.1	0.833							2	2	3		2	3	2	69.29	59.238	2	0.016836	30777	160513_QHF_FH_JSI12Kac_6	65.038	54.624			0.66779	0.72399	30.086	7	0	Median	NaN	NaN	NaN	0	0	Median	0.94097	1.1091	11.198	2	0	Median	0.63612	0.59424	7.1665	3	0	Median	0.7721	0.82523	18.511	2	0	Median	403750000	248140000	155610000	0	0	0	86950000	48824000	38126000	216930000	145250000	71688000	99867000	54068000	45798000	40103	1480	37734	246099;246100;246101;246102;246103;246104;246105	330130;330131;330132;330133;330134	330132	1471		5	
NVPGLAILLSK	1	Unmodified	1123.6965	0.69649476	4446	Q9BUL9	RPP25	Ribonuclease P protein subunit p25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	93.102	92.826	2	0.0091324	80539	160511_QHF_FH_JSI12i_3	58.699	47.941			0.73058	0.68319	25.361	4	4	Median	0.74303	0.64286	NaN	1	1	Median	0.37497	0.45453	NaN	1	1	Median	0.71834	0.72605	NaN	1	1	Median	0.79387	0.81799	NaN	1	1	Median	75128000	48115000	27013000	13959000	8567900	5391200	20454000	14993000	5460700	23720000	11874000	11846000	16994000	12680000	4314300	40104	4446	37735	246106;246107;246108;246109	330135;330136;330137;330138	330138			4	
NVPILYTASQACLQHPDVAAYK	1	Unmodified	2458.2315	0.23147986	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	76.688	75.866	3	1.5217E-18	66544	160511_QHF_FH_JSI11i_2	141.47	129.17			1.7494	1.7776	108.65	5	5	Median	0.43532	0.38109	NaN	1	1	Median	1.1697	1.4082	150.38	2	2	Median	1.7494	1.7776	NaN	1	1	Median	2.8516	3.2679	NaN	1	1	Median	233290000	122400000	110890000	18583000	14823000	3759700	83060000	48992000	34068000	84338000	40534000	43803000	47312000	18055000	29256000	40105	1421	37736	246110;246111;246112;246113;246114	330139;330140;330141;330142;330143	330141			5	
NVPLPEFPEHPFQEEHLK	1	Unmodified	2186.0797	0.07965389	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	74.294	73.427	3;4	6.4796E-06	63573	160511_QHF_FH_JSI12i_2	85.808	81.282			0.93772	0.99586	9.751	8	0	Median	1.0598	0.89668	11.303	2	0	Median	0.85782	1.0564	4.2463	2	0	Median	0.92351	0.93159	6.9509	2	0	Median	0.93809	1.0571	5.9531	2	0	Median	677200000	327350000	349850000	91344000	36458000	54886000	165150000	81719000	83428000	274700000	139160000	135540000	146010000	70012000	75995000	40106	1060	37737	246115;246116;246117;246118;246119;246120;246121;246122;246123	330144;330145;330146;330147;330148;330149;330150;330151;330152;330153;330154;330155;330156;330157;330158;330159	330144			16	
NVPNLHVMK	1	Unmodified	1050.5644	0.56443473	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		12	12						8	8	11	8	5	39.074	36.117	2;3	2.8517E-05	30356	160511_QHF_FH_JSI12i_3	91.318	62.169			1.0066	0.92966	101.74	32	24	Median	1.4821	1.2462	105.85	8	6	Median	0.78967	0.91517	121.52	11	10	Median	1.0217	0.97769	98.963	8	5	Median	0.90597	0.93899	76.437	5	3	Median	20195000000	10835000000	9360000000	3623200000	1898700000	1724500000	5591900000	3390900000	2201100000	7522400000	3936700000	3585700000	3458000000	1609100000	1848800000	40107	1595	37738	246124;246125;246126;246127;246128;246129;246130;246131;246132;246133;246134;246135;246136;246137;246138;246139;246140;246141;246142;246143;246144;246145;246146;246147;246148;246149;246150;246151;246152;246153;246154;246155	330160;330161;330162;330163;330164;330165;330166;330167;330168;330169;330170;330171;330172;330173;330174;330175;330176;330177;330178;330179;330180;330181;330182;330183;330184;330185;330186;330187;330188;330189;330190;330191;330192;330193;330194;330195;330196;330197;330198;330199;330200;330201;330202;330203;330204;330205;330206;330207;330208	330201			49	
NVPNLHVMK	1	Oxidation (M)	1066.5593	0.55934935	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.45		10	1						5	4	2	6	4	30.639	27.072	2;3	0.0029265	22757	160511_QHF_FH_JSI10i_2	47.603	24.174			1.3103	1.3057	119.03	14	10	Median	0.50045	0.42603	135.69	3	1	Median	2.3134	2.6776	NaN	1	1	Median	1.3103	1.3057	118.98	6	5	Median	2.0387	2.1976	146.68	4	3	Median	1121400000	519120000	602310000	241320000	149720000	91596000	13793000	4922200	8870700	544050000	200920000	343130000	322270000	163560000	158710000	40108	1595	37738	246156;246157;246158;246159;246160;246161;246162;246163;246164;246165;246166;246167;246168;246169;246170;246171	330209;330210;330211;330212;330213;330214;330215;330216;330217;330218;330219;330220;330221;330222;330223;330224;330225	330222		1265	17	
NVPNLHVMKAMQSLK	2	Acetyl (K);Oxidation (M)	1766.9171	0.91714535	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	1	0	1	1			By MS/MS		16	0									1			1		68.628	59.066	3	0.00079026	31993	160513_QHF_FH_JSI11Kac_6	63.681	43.574			0.33523	0.32793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33523	0.32793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40719000	28799000	11920000	0	0	0	0	0	0	40719000	28799000	11920000	0	0	0	40109	1595	37739	246172	330226	330226	1624	1265	1	
NVPNLHVMKAMQSLK	2	Acetyl (K)	1750.9222	0.92223073	1595	P46783;Q9NQ39	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	yes	no	1	0	0	1			By MS/MS		16	0									2			2		77.168	67.85	2;3	0.00030475	36998	160513_QHF_FH_JSI11Kac_6	74.786	48.245			0.1989	0.19051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1989	0.19051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	657000000	540290000	116710000	0	0	0	0	0	0	657000000	540290000	116710000	0	0	0	40110	1595	37739	246173;246174	330227;330228;330229	330227	1624		3	
NVPNWHR	0	Unmodified	921.45693	0.45693319	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	4.94		9	12						4	9	7	4	5	20.798	18.988	2;3	0.0017859	15340	160511_QHF_FH_JSI10i_3	79.939	75.583			1.0175	0.94484	50.245	23	4	Median	1.0389	0.89433	60.034	9	3	Median	0.73602	0.88351	52.385	6	1	Median	1.0745	1.0643	11.591	4	0	Median	1.0547	1.081	39.445	4	0	Median	12083000000	5728100000	6354600000	4828700000	2139600000	2689200000	4445100000	2127200000	2317900000	1169200000	492930000	676290000	1639700000	968430000	671290000	40111	2021	37740	246175;246176;246177;246178;246179;246180;246181;246182;246183;246184;246185;246186;246187;246188;246189;246190;246191;246192;246193;246194;246195;246196;246197;246198;246199	330230;330231;330232;330233;330234;330235;330236;330237;330238;330239;330240;330241;330242;330243;330244;330245;330246;330247;330248;330249;330250;330251;330252;330253;330254;330255;330256;330257;330258;330259;330260;330261;330262;330263;330264;330265;330266;330267	330238			38	
NVPPGLDEYNPFSDSR	0	Unmodified	1805.822	0.82204222	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			77.927	77.764	2	0.0083127	70383	160511_QHF_FH_JSI10i_1	68.034	43.691			0.66	0.76811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66	0.76811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39845000	21990000	17855000	0	0	0	39845000	21990000	17855000	0	0	0	0	0	0	40112	252	37741	246200	330268	330268			0	
NVPQEEEIMPPNSLPSNNSR	0	Unmodified	2251.0539	0.053909424	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	59.877	59.232	2	1.7885E-07	53598	160511_QHF_FH_JSI10i_1	91.032	83.83			1.191	1.1797	8.2222	4	1	Median	1.5767	1.345	NaN	1	0	Median	1.0195	1.1354	NaN	1	1	Median	1.2769	1.2257	NaN	1	0	Median	1.1108	1.128	NaN	1	0	Median	103480000	45392000	58087000	28164000	13796000	14368000	18772000	7951800	10821000	29564000	14037000	15526000	26978000	9606500	17372000	40113	2248	37742	246201;246202;246203;246204;246205	330269;330270;330271;330272;330273;330274;330275;330276;330277;330278	330276			10	
NVPQEESLEDSDVDADFK	1	Unmodified	2035.8858	0.88582427	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	59.968	59.576	2	3.703E-07	54214	160511_QHF_FH_JSI12i_1	95.631	82.651			1.3243	1.545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3243	1.545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27787000	11133000	16654000	0	0	0	27787000	11133000	16654000	0	0	0	0	0	0	40114	147	37743	246206;246207	330279;330280	330279			2	
NVPQVVNVQELK	1	Unmodified	1365.7616	0.76161421	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.086	60.445	2	0.0020828	54979	160511_QHF_FH_JSI12i_1	72.2	59.244			1.5354	1.4459	17.754	4	4	Median	1.722	1.4197	NaN	1	1	Median	1.4873	1.7878	NaN	1	1	Median	1.585	1.4726	NaN	1	1	Median	1.1226	1.1592	NaN	1	1	Median	295160000	165290000	129860000	84923000	44186000	40737000	67225000	36828000	30397000	68951000	39671000	29280000	74057000	44607000	29450000	40115	1443	37744	246208;246209;246210;246211	330281;330282;330283;330284	330282			4	
NVPTDVLSFPFHEHLK	1	Unmodified	1878.9628	0.96283322	1901	P58557	YBEY	Putative ribonuclease	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	1	2	2	3	76.608	71.746	4	0.00032292	70555	160511_QHF_FH_JSI12i_2	68.944	57.682			0.89665	1.0283	33.98	8	2	Median	2.3107	1.9737	NaN	1	0	Median	0.84663	1.0161	6.7467	2	0	Median	1.044	1.0355	25.763	2	1	Median	0.84712	0.90811	44.184	3	1	Plateau	421570000	212210000	209360000	51015000	15072000	35943000	236830000	131470000	105350000	59024000	27491000	31533000	74700000	38169000	36532000	40116	1901	37745	246212;246213;246214;246215;246216;246217;246218;246219	330285;330286;330287;330288;330289;330290;330291;330292;330293	330287			9	
NVPVGFGESWKK	2	Unmodified	1346.6983	0.69828568	1025	P13051	UNG	Uracil-DNA glycosylase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	49.865	49.747	3	0.00064554	43930	160511_QHF_FH_JSI11i_3	68.034	60.31			3.0727	2.9781	52.815	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2243	2.0499	NaN	1	1	Median	4.2447	4.3264	NaN	1	1	Median	199800000	61744000	138050000	0	0	0	0	0	0	90462000	29750000	60713000	109340000	31994000	77341000	40117	1025	37746	246220;246221	330294;330295	330294			2	
NVPVITGSK	1	Unmodified	913.52328	0.52328142	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.66	8	8	3				2			5	5	5	6	32.359	30.668	2	0.0024094	27093	160511_QHF_FH_JSI10i_2	65.305	27.067			1.0126	0.99347	81.11	20	19	Median	0.85987	0.7087	74.947	5	4	Median	1.2876	1.5336	68.973	4	4	Median	0.46161	0.44582	92.16	5	5	Median	0.88587	0.95805	98.602	6	6	Median	8300900000	4548900000	3752100000	2090000000	1100400000	989590000	2156700000	1341000000	815700000	2071500000	1094400000	977090000	1982700000	1013000000	969700000	40118	1424	37747	246222;246223;246224;246225;246226;246227;246228;246229;246230;246231;246232;246233;246234;246235;246236;246237;246238;246239;246240;246241;246242	330296;330297;330298;330299;330300;330301;330302;330303;330304;330305;330306;330307;330308;330309;330310;330311;330312;330313;330314;330315;330316;330317;330318;330319;330320;330321	330320			26	
NVPYGNIQSR	0	Unmodified	1146.5782	0.57817054	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.03	4	4					3	1		2	3	3	4	31.963	28.271	2	7.0848E-05	24512	160511_QHF_FH_JSI9i_2	89.047	79.46			1.0131	1.0765	10.03	12	0	Median	1.3976	1.1715	11.086	2	0	Median	0.89335	1.1374	7.5824	3	0	Plateau	1.0133	0.98575	13.224	3	0	Median	0.99625	1.0856	10.635	4	0	Median	1558700000	736150000	822590000	310860000	141350000	169520000	405090000	216480000	188610000	448770000	204650000	244120000	394010000	173670000	220340000	40119	2294	37748	246243;246244;246245;246246;246247;246248;246249;246250;246251;246252;246253;246254	330322;330323;330324;330325;330326;330327;330328;330329;330330;330331;330332;330333;330334;330335;330336;330337;330338;330339	330334			18	
NVPYVFVR	0	Unmodified	992.54435	0.54435122	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	59.159	58.152	2	0.0026644	49824	160511_QHF_FH_JSI12i_2	86.086	52.536			0.90999	0.90621	55.609	5	3	Median	1.0657	0.90621	NaN	1	0	Median	0.62687	0.77302	NaN	1	1	Median	0.90999	0.93409	NaN	1	0	Median	1.0148	1.1465	106	2	2	Median	1626500000	834910000	791540000	211460000	88218000	123250000	279650000	169900000	109750000	510610000	255500000	255110000	624720000	321290000	303430000	40120	1861	37749	246255;246256;246257;246258;246259	330340;330341;330342;330343;330344;330345;330346	330340			7	
NVQAEEMVEFSSGLK	1	Unmodified	1666.7872	0.78723662	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.806	12	10	8							9	6	8	7	71.502	70.76	2;3	9.8913E-98	60974	160511_QHF_FH_JSI12i_2	256.52	220			0.94542	1.0118	54.358	21	9	Median	0.90501	0.75436	39.055	5	2	Median	0.7562	0.93407	29.753	5	2	Median	1.0453	1.0418	73.5	7	4	Median	0.85858	0.92677	45.143	4	1	Linear	3131000000	1592000000	1539000000	372160000	186570000	185590000	921190000	552670000	368520000	1058600000	492130000	566430000	779080000	360650000	418420000	40121	1263	37750	246260;246261;246262;246263;246264;246265;246266;246267;246268;246269;246270;246271;246272;246273;246274;246275;246276;246277;246278;246279;246280;246281;246282;246283;246284;246285;246286;246287;246288;246289	330347;330348;330349;330350;330351;330352;330353;330354;330355;330356;330357;330358;330359;330360;330361;330362;330363;330364;330365;330366;330367;330368;330369;330370;330371;330372;330373;330374;330375;330376;330377;330378;330379;330380;330381;330382;330383;330384;330385;330386;330387;330388;330389;330390;330391;330392;330393;330394;330395;330396;330397;330398;330399;330400;330401;330402;330403;330404;330405	330358			59	
NVQAEEMVEFSSGLK	1	Oxidation (M)	1682.7822	0.78215124	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	53.639	52.974	2	0.0071191	48143	160511_QHF_FH_JSI12i_1	74.326	58.436			0.88825	0.92436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88825	0.92436	NaN	1	1	Median	19794000	8788700	11005000	0	0	0	0	0	0	0	0	0	19794000	8788700	11005000	40122	1263	37750	246290	330406	330406		889	1	
NVQGIIEILK	1	Unmodified	1125.6758	0.67575932	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.62	2	8	4						2	3	5	4	4	84.636	83.146	2	8.1766E-07	74856	160511_QHF_FH_JSI10i_2	123.35	98.461			5.8753	5.3139	320.09	11	10	Median	23.276	19.69	70.133	2	2	Median	52.931	63.468	NaN	1	1	Median	2.18	2.0089	369.33	4	4	Median	1.1699	1.1295	344.48	4	3	Median	1628600000	829220000	799360000	238560000	113380000	125180000	422890000	249100000	173790000	548550000	283200000	265350000	418590000	183550000	235050000	40123	1544	37751	246291;246292;246293;246294;246295;246296;246297;246298;246299;246300;246301;246302;246303;246304;246305;246306	330407;330408;330409;330410;330411;330412;330413;330414;330415;330416;330417;330418;330419;330420;330421;330422;330423;330424;330425;330426	330423			19	
NVQILNMVTR	0	Unmodified	1186.6492	0.64922699	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	67.987	67.167	2	8.0587E-05	59748	160511_QHF_FH_JSI10i_2	101.9	32.698			6.5177	7.3212	222.77	5	5	Median	NaN	NaN	NaN	0	0	Median	1.079	1.3158	291.95	2	2	Median	1.1515	1.1725	296.59	2	2	Median	6.5177	7.3212	NaN	1	1	Median	593160000	265780000	327380000	0	0	0	193670000	100940000	92734000	304360000	150470000	153890000	95133000	14374000	80759000	40124	219	37752	246307;246308;246309;246310;246311	330427;330428;330429;330430;330431	330431			5	
NVQILNMVTR	0	Oxidation (M)	1202.6441	0.64414162	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	1	0	By MS/MS		By MS/MS		15	0								2		1		1		60.583	49.798	2	0.0040974	27200	160513_QHF_FH_JSI11Kac_5	77.677	49.935			0.59732	0.53106	1.4624	2	2	Median	0.65678	0.5256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54324	0.53658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4271100	2944400	1326700	2441700	1694300	747360	0	0	0	1829400	1250100	579310	0	0	0	40125	219	37752	246312;246313	330432;330433	330433		90	2	
NVQLLFAR	0	Unmodified	959.55525	0.55525025	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	63.571	62.264	2	0.0070124	53496	160511_QHF_FH_JSI12i_2	58.981	33.244			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40126	3196	37753	246314	330434	330434			1	
NVQLNDVAHLVQPSQADAR	0	Unmodified	2074.0556	0.055564404	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	65.098	64.36	3	3.3978E-06	56146	160511_QHF_FH_JSI11i_2	92.309	67.771			1.3184	1.5113	8.1635	5	5	Median	1.7884	1.5113	NaN	1	1	Median	1.2507	1.5247	1.3027	2	2	Median	1.4726	1.4778	15.961	2	2	Median	NaN	NaN	NaN	0	0	Median	427400000	160380000	267020000	67192000	24289000	42902000	135610000	65385000	70227000	224600000	70710000	153890000	0	0	0	40127	5108	37754	246315;246316;246317;246318;246319;246320	330435;330436;330437;330438;330439;330440	330437			6	
NVQLQENEIR	0	Unmodified	1241.6364	0.6364137	1461	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	3	3	34.048	31.463	2	5.4218E-10	28302	160511_QHF_FH_JSI11i_1	138.98	110.8			1.0207	0.9996	32.782	10	7	Median	0.85415	0.71053	39.46	2	2	Median	1.0173	1.2638	33.339	2	1	Median	1.0247	1.0008	9.407	3	2	Median	1.0166	1.0689	39.532	3	2	Median	1220700000	645450000	575260000	180820000	87449000	93374000	377820000	212750000	165080000	369420000	185010000	184420000	292630000	160240000	132390000	40128	1461	37755	246321;246322;246323;246324;246325;246326;246327;246328;246329;246330	330441;330442;330443;330444;330445;330446;330447;330448;330449;330450;330451;330452	330442			12	
NVQLSLLTER	0	Unmodified	1171.6561	0.65608651	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	63.482	62.175	2	0.015071	53437	160511_QHF_FH_JSI12i_2	51.872	30.572			0.72709	0.78578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72709	0.78578	NaN	1	1	Median	42953000	25858000	17095000	0	0	0	0	0	0	0	0	0	42953000	25858000	17095000	40129	1695	37756	246331	330453	330453			1	
NVQLTENEIR	0	Unmodified	1214.6255	0.62551466	1980	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.92	2	5					4			1	2	3	5	39.426	35.192	2	1.8175E-07	20316	160513_QHF_FH_JSI12Kac_4	115.71	82.874			1.0444	0.89899	125.22	11	9	Median	1.0444	0.89899	NaN	1	0	Median	0.72514	0.85432	129.61	2	2	Median	0.77979	0.75866	113.24	3	2	Median	2.3438	2.3812	167.28	5	5	Median	1230800000	529250000	701570000	181490000	92038000	89455000	117060000	62459000	54605000	555840000	221310000	334520000	376430000	153440000	222990000	40130	1980	37757	246332;246333;246334;246335;246336;246337;246338;246339;246340;246341;246342	330454;330455;330456;330457;330458;330459;330460;330461;330462;330463;330464;330465	330463			12	
NVQLYKMR	1	Acetyl (K)	1092.575	0.57499942	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.7	0.471								1	2			2	1	53.212	42.97	2	0.0033201	23251	160513_QHF_FH_JSI11Kac_6	88.942	79.031			0.25783	0.25323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25783	0.25323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24009000	22592000	1416300	0	0	0	0	0	0	24009000	22592000	1416300	0	0	0	40131	1673	37758	246343;246344;246345	330466;330467;330468	330466	1695		3	
NVQPSDQGHYK	1	Unmodified	1271.5895	0.58946351	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	9.0439	8.6015	2	0.0014791	6228	160511_QHF_FH_JSI12i_2	76.064	64.017			0.84408	0.84799	83.336	3	3	Median	2.2084	1.9129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84408	0.84799	NaN	1	1	Median	0.33121	0.36134	NaN	1	1	Median	57153000	34064000	23089000	12069000	2393700	9675600	0	0	0	27109000	17787000	9322000	17975000	13884000	4091200	40132	5207	37759	246346;246347;246348	330469;330470;330471	330469			3	
NVQQTVSAK	1	Unmodified	973.51926	0.51925868	544	O75586	MED6	Mediator of RNA polymerase II transcription subunit 6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.168	9.9322	2	0.00065147	7708	160511_QHF_FH_JSI10i_1	87.308	57.141			0.26983	0.31874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26983	0.31874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36373000	28789000	7584600	0	0	0	36373000	28789000	7584600	0	0	0	0	0	0	40133	544	37760	246349	330472	330472			1	
NVQQTVSAKGPPEKR	2	2 Acetyl (K)	1721.906	0.90604662	544	O75586	MED6	Mediator of RNA polymerase II transcription subunit 6	yes	yes	2	0	0	2				By MS/MS	13	0						1							1	44.453	35.618	2	0.0049101	19724	160513_QHF_FH_JSI12Kac_3	84.289	61.756			1.4775	1.6152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4775	1.6152	NaN	1	0	Median	3083600	1425300	1658300	0	0	0	0	0	0	0	0	0	3083600	1425300	1658300	40134	544	37761	246350	330473;330474	330474	287;288		2	
NVQSETK	1	Unmodified	804.39775	0.39774656	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		3.2257	3.0574	2	0.011216	1761	160511_QHF_FH_JSI10i_1	62.659	52.909			11.501	12.055	25.49	2	2	Median	NaN	NaN	NaN	0	0	Median	8.8222	10.067	NaN	1	1	Median	14.992	14.436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41576000	5965700	35610000	0	0	0	21633000	4035800	17597000	19943000	1930000	18013000	0	0	0	40135	2540	37762	246351;246352;246353	330475;330476;330477	330477			3	
NVQSVSIIDTELK	1	Unmodified	1444.7773	0.77732386	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.26	6.23	10	4				2	5	2		3	7	4	9	69.586	65.044	2;3	3.1781E-09	56029	160511_QHF_FH_JSI12i_2	103.21	74.486			1.5697	1.5739	85.857	21	21	Median	2.0253	1.6905	100.41	3	3	Median	0.72064	0.8461	73.049	6	6	Median	1.8563	1.8258	76.349	4	4	Median	1.287	1.346	101.18	8	8	Median	2422800000	1162700000	1260100000	449170000	215420000	233750000	782720000	455070000	327650000	440020000	150750000	289270000	750930000	341500000	409430000	40136	2692	37763	246354;246355;246356;246357;246358;246359;246360;246361;246362;246363;246364;246365;246366;246367;246368;246369;246370;246371;246372;246373;246374;246375;246376	330478;330479;330480;330481;330482;330483;330484;330485;330486;330487;330488;330489;330490;330491;330492;330493;330494;330495;330496;330497;330498;330499;330500;330501	330481			24	
NVQVFLISGGFR	0	Unmodified	1335.7299	0.72992016	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	84.077	75.047	2	6.3034E-12	39973	160513_QHF_FH_JSI12Kac_6	119.53	90.442			3.2632	3.0939	17.228	2	1	Median	4.0873	3.4947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6052	2.7391	NaN	1	0	Median	119820000	29045000	90772000	72279000	14799000	57481000	0	0	0	0	0	0	47538000	14246000	33291000	40137	2083	37764	246377;246378	330502;330503	330503			2	
NVRPDYLK	1	Unmodified	1003.5451	0.5450795	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	20.351	19.864	2;3	0.02473	16858	160511_QHF_FH_JSI9i_2	41.029	21.552			0.47308	0.42585	135.03	6	6	Median	0.46634	0.39817	NaN	1	1	Median	0.27609	0.3394	NaN	1	1	Median	3.1975	3.0529	134.78	3	3	Median	0.20043	0.22447	NaN	1	1	Median	1317900000	734350000	583510000	332290000	231150000	101140000	336580000	251280000	85298000	531230000	160060000	371170000	117760000	91856000	25903000	40138	807	37765	246379;246380;246381;246382;246383;246384	330504;330505;330506;330507;330508;330509	330508			6	
NVSDYTPLSLAASGGYVNIIK	1	Unmodified	2181.1317	0.13174904	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		101.08	101.01	3	3.5336E-06	88681	160511_QHF_FH_JSI11i_2	83.251	68.322			0.63179	0.68162	4.8121	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6031	0.70522	NaN	1	1	Median	0.66184	0.65882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85949000	45107000	40842000	0	0	0	40930000	22966000	17964000	45019000	22140000	22878000	0	0	0	40139	3434;489	37766	246385;246386	330510;330511	330511			1	
NVSEELDRTPPEVSK	1	Unmodified	1698.8424	0.84244331	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.84	7	10					2			5	5	4	5	40.231	38.419	2;3	8.8031E-06	33424	160511_QHF_FH_JSI9i_2	118.47	112.44			0.77891	0.92052	70.927	19	17	Median	0.74006	0.60123	76.02	5	5	Median	0.77891	0.92052	54.444	5	4	Median	1.0177	0.99175	111.81	4	4	Median	0.97323	1.0891	62.668	5	4	Median	3297500000	1535000000	1762500000	670180000	276330000	393850000	945740000	503280000	442450000	1036500000	474290000	562180000	645150000	281090000	364060000	40140	2665	37767	246387;246388;246389;246390;246391;246392;246393;246394;246395;246396;246397;246398;246399;246400;246401;246402;246403;246404;246405	330512;330513;330514;330515;330516;330517;330518;330519;330520;330521;330522;330523;330524;330525;330526;330527;330528;330529;330530;330531;330532;330533	330523			22	
NVSGGYLVLYK	1	Unmodified	1211.655	0.65502388	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.42		2						4	4	4	3	1	2	68.616	60.921	2	2.7853E-05	31681	160513_QHF_FH_JSI9Kac_5	104.17	76.425			1.0384	0.93849	70.807	9	6	Median	1.0384	0.88469	93.427	3	2	Median	0.79091	0.93469	50.324	3	1	Median	1.7933	1.7092	NaN	1	1	Median	1.6043	1.7566	8.305	2	2	Median	203820000	110420000	93403000	63302000	34049000	29253000	72279000	43574000	28705000	50737000	25212000	25525000	17506000	7586200	9920300	40141	4936	37768	246406;246407;246408;246409;246410;246411;246412;246413;246414;246415	330534;330535;330536;330537;330538;330539;330540;330541;330542;330543;330544	330534			11	
NVSGISFTENMGSSQQK	1	Unmodified	1812.8312	0.8312267	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								1		2	2	53.054	52.371	2	8.925E-16	47702	160511_QHF_FH_JSI12i_1	192.18	177.92			0.44212	0.47941	76.552	4	4	Linear	4.4534	3.9065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1841	1.2155	57.386	2	2	Median	0.76317	0.78005	NaN	1	1	Median	104920000	44696000	60220000	18063000	3876700	14186000	0	0	0	45873000	22876000	22997000	40981000	17944000	23037000	40142	1685	37769	246416;246417;246418;246419;246420	330545;330546;330547;330548;330549	330546			5	
NVSHNPLLLLTPQK	1	Unmodified	1572.8988	0.8987764	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	3.19		14	3						1	5	4	5	4	68.761	67.325	2;3	1.7693E-13	60000	160511_QHF_FH_JSI10i_2	128.31	113.62			0.98898	1.1449	53.594	13	9	Median	0.71167	0.61722	59.43	4	2	Median	0.98898	1.2081	43.489	3	3	Median	0.97382	0.96541	59.682	4	3	Median	1.0777	1.212	8.0632	2	1	Median	1842100000	1139300000	702800000	441100000	284710000	156390000	355510000	220050000	135460000	676960000	406270000	270690000	368510000	228250000	140260000	40143	1604	37770	246421;246422;246423;246424;246425;246426;246427;246428;246429;246430;246431;246432;246433;246434;246435;246436;246437;246438	330550;330551;330552;330553;330554;330555;330556;330557;330558;330559;330560;330561;330562;330563;330564;330565;330566;330567;330568;330569;330570;330571;330572;330573;330574;330575;330576	330574			27	
NVSIGIVGK	1	Unmodified	885.52837	0.5283668	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.83	7	4					2	2		2	3	6	4	46.384	43.071	2	0.0010523	37784	160511_QHF_FH_JSI9i_2	81.296	42.505			0.5205	0.51053	75.808	15	14	Median	0.65352	0.53615	48.819	2	1	Median	0.22314	0.27723	86.357	3	3	Plateau	0.53269	0.53951	71.558	6	6	Median	0.80172	0.82908	105.78	4	4	Median	3684500000	2394800000	1289700000	474290000	280270000	194030000	828820000	550590000	278230000	2029800000	1328400000	701400000	351620000	235530000	116090000	40144	1264	37771	246439;246440;246441;246442;246443;246444;246445;246446;246447;246448;246449;246450;246451;246452;246453	330577;330578;330579;330580;330581;330582;330583;330584;330585;330586;330587;330588;330589;330590;330591;330592;330593;330594	330588			18	
NVSINTVTYEWAPPVQNQALAR	0	Unmodified	2470.2605	0.2604718	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								1	3	3	3	86.121	85.65	2;3	2.6176E-85	77708	160511_QHF_FH_JSI10i_1	240.2	226.78			1.0312	1.0393	24.903	10	2	Median	1.0511	0.90485	NaN	1	0	Median	0.89557	1.0438	34.213	3	1	Median	1.3272	1.2959	19.551	3	1	Median	0.81071	0.82828	21.825	3	0	Plateau	328790000	151970000	176820000	11829000	5621000	6207700	106280000	53112000	53166000	93145000	38001000	55144000	117540000	55238000	62304000	40145	5280	37772	246454;246455;246456;246457;246458;246459;246460;246461;246462;246463	330595;330596;330597;330598;330599;330600;330601;330602;330603;330604;330605;330606;330607;330608;330609;330610;330611;330612	330603			18	
NVSIVAFYIYEQTK	1	Unmodified	1673.8665	0.86647322	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									7		1	3	3	90.784	82.005	2;3	5.3616E-07	43987	160513_QHF_FH_JSI12Kac_6	113.76	96.546			2.1392	2.1399	117.17	6	6	Median	NaN	NaN	NaN	0	0	Median	0.33625	0.39494	NaN	1	1	Median	2.4091	2.3046	120.79	3	3	Median	3.3395	3.5652	82.682	2	2	Median	213750000	99305000	114440000	0	0	0	29944000	25323000	4620900	130530000	56880000	73652000	53271000	17101000	36170000	40146	4989	37773	246464;246465;246466;246467;246468;246469;246470	330613;330614;330615;330616;330617;330618;330619	330618			7	
NVSLGNVLAVAYATQR	0	Unmodified	1674.9053	0.90531834	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.106	79.438	2	8.1094E-06	44409	160513_QHF_FH_JSI10Kac_6	150.05	131.78			0.70039	0.84095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70039	0.84095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152480000	88828000	63652000	0	0	0	152480000	88828000	63652000	0	0	0	0	0	0	40147	5119	37774	246471	330620	330620			1	
NVSQESLETK	1	Unmodified	1133.5564	0.55643205	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	17.869	17.447	2	0.0014293	14954	160511_QHF_FH_JSI12i_1	77.192	61.31			1.7826	1.6107	76.882	6	6	Median	1.6962	1.4399	NaN	1	1	Median	3.2962	3.8013	NaN	1	1	Median	0.9908	0.95184	90.248	2	2	Median	1.3892	1.4721	92.776	2	2	Median	194450000	78826000	115630000	29287000	10915000	18372000	29353000	3770500	25582000	58983000	29215000	29768000	76831000	34925000	41906000	40148	2977	37775	246472;246473;246474;246475;246476;246477;246478	330621;330622;330623;330624;330625;330626;330627	330623			7	
NVSQSQLQK	1	Unmodified	1030.5407	0.5407224	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.626	11.371	2	0.00011395	8977	160511_QHF_FH_JSI11i_1	110.41	74.528			2.7834	2.6918	21.039	3	3	Median	NaN	NaN	NaN	0	0	Median	1.716	1.9986	NaN	1	1	Median	2.7834	2.6918	NaN	1	1	Median	2.8627	3.0006	NaN	1	1	Median	193000000	64699000	128300000	0	0	0	68961000	25955000	43006000	61265000	16769000	44496000	62772000	21975000	40796000	40149	5053	37776	246479;246480;246481	330628;330629;330630	330628			3	
NVSQSQMAK	1	Oxidation (M)	1007.4706	0.47059393	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		5.1868	-2.134	2	0.04655	1698	160513_QHF_FH_JSI11Kac_3	35.438	26.493			0.99915	0.94476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99915	0.94476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2502200	1085100	1417100	0	0	0	0	0	0	2502200	1085100	1417100	0	0	0	40150	1929	37777	246482	330631	330631			1	
NVSSFPDDATSPLQENR	0	Unmodified	1875.8599	0.85988429	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.428	54.769	2	7.6433E-98	48666	160511_QHF_FH_JSI9i_1	259.7	244.88			1.0435	0.97502	12.959	4	0	Median	1.0577	0.87714	NaN	1	0	Median	0.70944	0.86063	NaN	1	0	Median	1.1456	1.0902	NaN	1	0	Median	1.0296	1.0838	NaN	1	0	Median	1225800000	607550000	618240000	324940000	162100000	162840000	287110000	152370000	134740000	315410000	143570000	171850000	298320000	149520000	148800000	40151	1766	37778	246483;246484;246485;246486	330632;330633;330634;330635;330636;330637;330638;330639;330640	330640			9	
NVSSFPDDATSPLQENRNNQGTVNWSVDDIVK	1	Unmodified	3545.6659	0.66588251	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	86.3	86.148	3	0.00010156	74827	160511_QHF_FH_JSI12i_3	46.464	41.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13558000	0	13558000	0	0	0	0	0	0	0	0	0	13558000	0	13558000	40152	1766	37779	246487	330641	330641			1	
NVSTGSAENEEK	1	Unmodified	1263.5579	0.55788861	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	2	1	8.8885	7.5107	2	2.1721E-06	6085	160511_QHF_FH_JSI10i_1	120.06	81.769			0.78526	0.93117	71.945	7	7	Median	1.1151	0.91074	53.264	2	2	Median	0.80388	0.94998	2.8271	2	2	Median	0.25397	0.26062	9.3257	2	2	Median	1.3974	1.4564	NaN	1	1	Median	461790000	256640000	205140000	139980000	62812000	77168000	201460000	131700000	69760000	44968000	33148000	11820000	75373000	28979000	46395000	40153	404	37780	246488;246489;246490;246491;246492;246493;246494	330642;330643;330644;330645;330646;330647;330648	330646			7	
NVSTKPSNIVK	2	Acetyl (K)	1227.6823	0.68230126	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.4						4	1				2	2	1	42.675	33.457	2	0.001267	18246	160513_QHF_FH_JSI10Kac_3	84.687	64.9			0.80805	0.89405	650.93	2	2	Median	NaN	NaN	NaN	0	0	Median	79.136	89.19	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.008251	0.008962	NaN	1	1	Median	11994000	7706100	4287900	0	0	0	4638200	2428100	2210100	3431000	1365600	2065400	3924800	3912400	12332	40154	3285	37781	246495;246496;246497;246498;246499	330649;330650;330651;330652;330653	330652	2820		5	
NVSVKDIR	1	Unmodified	929.52943	0.52942943	2231	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	11.691	11.182	3	0.035723	8624	160511_QHF_FH_JSI12i_2	35.445	11.415			0.0061664	0.0066929	310.13	3	2	Median	NaN	NaN	NaN	0	0	Median	0.086727	0.097187	378.39	2	1	Median	NaN	NaN	NaN	0	0	Median	0.0060697	0.006427	NaN	1	1	Median	12513000000	11833000000	679620000	0	0	0	7362400000	6705400000	657040000	0	0	0	5150500000	5127900000	22580000	40155	2231	37782	246500;246501;246502	330654;330655;330656	330654			3	
NVSVKDVR	1	Acetyl (K)	957.52434	0.52434406	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1		By MS/MS		By MS/MS	13.2	0.748					1	2	2				2		3	33.927	25.153	2	0.015664	14723	160513_QHF_FH_JSI12Kac_3	66.692	43.801			0.98097	1.123	7.5412	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98368	1.1686	2.3473	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95487	1.0469	6.6464	2	0	Median	54888000	31794000	23094000	0	0	0	26634000	16995000	9638300	0	0	0	28254000	14799000	13455000	40156	2072	37783	246503;246504;246505;246506;246507	330657;330658;330659;330660;330661;330662;330663;330664	330660	2154		8	
NVSVMTMIFK	1	Unmodified	1168.5984	0.59843698	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	6.42		3							7	3	2	3	2	86.924	80.739	2	0.00015852	42587	160513_QHF_FH_JSI11Kac_6	93.649	77.987			0.28027	0.34076	180.98	9	9	Median	0.40494	0.34875	248.54	3	3	Median	0.16846	0.20288	73.336	2	2	Median	0.32796	0.32108	70.848	2	2	Median	0.45436	0.4769	342.42	2	2	Median	510590000	231460000	279130000	183880000	69088000	114790000	89954000	79074000	10880000	164320000	58330000	106000000	72433000	24965000	47467000	40157	2358	37784	246508;246509;246510;246511;246512;246513;246514;246515;246516;246517	330665;330666;330667;330668;330669;330670;330671;330672;330673;330674	330665			10	
NVTAIQGPGGK	1	Unmodified	1040.5615	0.56145784	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.98	4	5					5			1	5	4	4	24.838	21.206	2	9.065E-06	17899	160511_QHF_FH_JSI12i_2	111.46	94.215			2.2186	2.4702	100.4	14	14	Median	3.6143	3.1399	NaN	1	1	Median	1.5498	1.8191	117.15	5	5	Median	2.7384	2.7108	96.991	4	4	Median	2.2446	2.4702	112.92	4	4	Median	1449000000	584230000	864780000	105780000	42527000	63249000	549910000	244340000	305570000	370680000	107590000	263080000	422640000	189770000	232870000	40158	1698	37785	246518;246519;246520;246521;246522;246523;246524;246525;246526;246527;246528;246529;246530;246531	330675;330676;330677;330678;330679;330680;330681;330682;330683;330684;330685;330686;330687;330688	330677			14	
NVTDVVNTCHDAGISK	1	Unmodified	1728.8101	0.81009732	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.69	2	7					1			1	3	4	2	39.547	37.69	2;3	3.3215E-05	32244	160511_QHF_FH_JSI11i_2	110.98	101.55			0.45645	0.45473	114.41	7	7	Median	0.27828	0.23497	NaN	1	1	Median	0.29033	0.35331	NaN	1	1	Median	0.75473	0.75327	119.2	4	4	Median	0.2063	0.23165	NaN	1	1	Median	628230000	434550000	193680000	72019000	49655000	22364000	147350000	119290000	28056000	346430000	211350000	135080000	62432000	54254000	8177800	40159	5596	37786	246532;246533;246534;246535;246536;246537;246538;246539;246540;246541	330689;330690;330691;330692;330693;330694;330695;330696;330697;330698;330699	330697			11	
NVTELNEPLSNEER	0	Unmodified	1642.7798	0.77984305	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.7	9	8	1			6	4			5	9	6	8	47.87	43.577	2;3	7.9014E-46	39437	160511_QHF_FH_JSI11i_1	260.22	242.4			0.99975	0.96975	107.3	21	21	Median	1.7987	1.5147	125.96	4	4	Median	0.76967	0.92053	116.17	6	6	Median	0.99975	0.96975	116.65	5	5	Median	0.88903	0.95574	108.91	6	6	Median	14775000000	7282700000	7492100000	3247400000	1575000000	1672500000	3664600000	1936900000	1727700000	3771200000	1960200000	1811000000	4091500000	1810600000	2280800000	40160	1976	37787	246542;246543;246544;246545;246546;246547;246548;246549;246550;246551;246552;246553;246554;246555;246556;246557;246558;246559;246560;246561;246562;246563;246564;246565;246566;246567;246568;246569	330700;330701;330702;330703;330704;330705;330706;330707;330708;330709;330710;330711;330712;330713;330714;330715;330716;330717;330718;330719;330720;330721;330722;330723;330724;330725;330726;330727;330728;330729;330730;330731;330732;330733	330701			34	
NVTELNEPLSNEERNLLSVAYK	1	Unmodified	2531.2867	0.28674613	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	88.626	88.012	3	1.9386E-05	77383	160511_QHF_FH_JSI9i_2	63.869	50.681			0.96053	0.92054	69.05	4	4	Median	0.89417	0.75268	NaN	1	1	Median	0.57521	0.7027	112.98	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0318	1.1258	NaN	1	1	Median	196530000	118300000	78226000	40426000	22073000	18353000	117270000	76402000	40872000	0	0	0	38829000	19828000	19001000	40161	1976	37788	246570;246571;246572;246573	330734;330735;330736;330737	330735			4	
NVTEMAMNPHIK	1	Unmodified	1383.6639	0.66389078	4346	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.052	40.586	2	0.00025188	34846	160511_QHF_FH_JSI11i_2	77.379	70.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40162	4346	37789	246574	330738	330738			1	
NVTFEHVK	1	Unmodified	972.50288	0.50288033	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		19.658	19.118	2	0.029875	15606	160511_QHF_FH_JSI11i_2	50.04	32.005			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32994000	32994000	0	0	0	0	13503000	13503000	0	19491000	19491000	0	0	0	0	40163	4261	37790	246575;246576	330739;330740	330739			2	
NVTFHGVLLDAFFNESSADWR	0	Unmodified	2424.1499	0.14985872	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	93.587	85.215	3	1.0293E-10	47690	160513_QHF_FH_JSI9Kac_6	91.767	83.774			0.7452	0.79305	53.531	4	1	Median	1.7909	1.5672	NaN	1	0	Median	0.81264	0.95684	NaN	1	0	Median	0.68336	0.65729	NaN	1	0	Median	0.41224	0.44723	NaN	1	1	Median	353240000	207280000	145960000	77292000	27555000	49737000	170160000	102680000	67478000	46594000	27321000	19273000	59188000	49717000	9470400	40164	1650	37791	246577;246578;246579;246580	330741;330742;330743	330741			3	
NVTGHYISPFHDIPLK	1	Unmodified	1836.9523	0.95226853	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	3	4	4	64.822	64.029	3;4	5.5146E-05	55708	160511_QHF_FH_JSI12i_2	73.464	69.945			0.78667	0.87657	21.554	13	5	Median	1.1064	0.97472	22.975	2	1	Median	0.68148	0.80136	10.802	3	1	Median	1.0445	1.0123	29.671	4	3	Median	0.76963	0.8573	22.29	4	0	Median	1115000000	565990000	548990000	127500000	53738000	73761000	252570000	127150000	125430000	476560000	255340000	221220000	258350000	129770000	128580000	40165	4682	37792	246581;246582;246583;246584;246585;246586;246587;246588;246589;246590;246591;246592;246593	330744;330745;330746;330747;330748;330749;330750;330751;330752;330753;330754;330755;330756;330757;330758;330759;330760;330761;330762;330763;330764;330765	330747			20	
NVTGILWNLSSSDHLK	1	Unmodified	1782.9264	0.92644771	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	2	1		81.558	74.953	2;3	8.9343E-12	73890	160511_QHF_FH_JSI11i_3	113.99	89.606			0.28438	0.32927	129.28	3	3	Median	0.14209	0.12117	NaN	1	1	Median	0.61427	0.72019	110.68	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173490000	111220000	62267000	40135000	32219000	7916600	133350000	79000000	54350000	0	0	0	0	0	0	40166	5608	37793	246594;246595;246596;246597	330766;330767;330768;330769	330766			4	
NVTLKTIK	2	Acetyl (K)	957.58588	0.58588168	1852;5413	P55209;Q9ULW6	NAP1L1;NAP1L2	Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 2	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	0.471							4	2		1	3	1	1	50.324	39.88	2	0.017913	23467	160513_QHF_FH_JSI11Kac_4	69.812	31.02			0.52681	0.62879	389.78	2	2	Median	NaN	NaN	NaN	0	0	Median	0.52681	0.62879	389.78	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42668000	37414000	5253800	958710	958710	0	12360000	7105900	5253800	23255000	23255000	0	6094100	6094100	0	40167	1852;5413	37794	246598;246599;246600;246601;246602;246603	330770;330771;330772;330773;330774;330775	330773	1870		6	
NVTLNPDPNEIK	1	Unmodified	1352.6936	0.69359423	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.66	5				1	2				2	3	2	1	50.023	46.747	2	9.9238E-11	41841	160511_QHF_FH_JSI10i_1	145.25	129.59			0.75458	0.80042	38.762	7	2	Median	1.1831	0.97441	82.874	2	2	Median	0.80441	0.94576	18.127	2	0	Median	0.70804	0.68399	15.391	2	0	Median	0.75458	0.80042	NaN	1	0	Median	3733400000	1887800000	1845600000	1069400000	463920000	605480000	912670000	518520000	394160000	925600000	452000000	473610000	825750000	453390000	372360000	40168	2480	37795	246604;246605;246606;246607;246608;246609;246610;246611	330776;330777;330778;330779;330780;330781;330782;330783;330784;330785;330786	330781			11	
NVTLPAVFK	1	Unmodified	987.57532	0.57531699	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.11	4	4	4			1	3	4		5	5	5	5	68.848	63.797	2	2.7523E-05	59453	160511_QHF_FH_JSI9i_2	103.56	86.178			1.012	0.96782	31.939	20	1	Median	1.1653	0.95348	51.938	5	1	Median	0.80592	0.96829	17.974	5	0	Median	0.96238	0.9509	21.139	5	0	Median	1.0361	1.1481	15.618	5	0	Median	10235000000	4867500000	5367900000	1960200000	864230000	1096000000	2621000000	1354000000	1267000000	3382200000	1635200000	1747000000	2272000000	1014000000	1257900000	40169	1457	37796	246612;246613;246614;246615;246616;246617;246618;246619;246620;246621;246622;246623;246624;246625;246626;246627;246628;246629;246630;246631	330787;330788;330789;330790;330791;330792;330793;330794;330795;330796;330797;330798;330799;330800;330801;330802;330803;330804;330805;330806;330807;330808;330809;330810;330811;330812;330813;330814;330815;330816;330817;330818;330819;330820;330821;330822;330823	330807			37	
NVTMETE	0	Unmodified	822.34293	0.3429338	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.135	18.654	2	0.011657	16272	160511_QHF_FH_JSI12i_1	76.847	72.165			0.91008	0.95645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91008	0.95645	NaN	1	1	Median	48819000	24352000	24466000	0	0	0	0	0	0	0	0	0	48819000	24352000	24466000	40170	1661	37797	246632	330824	330824			1	
NVTMETE	0	Oxidation (M)	838.33785	0.33784842	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				19.826	18.696	1	0.00065415	15697	160511_QHF_FH_JSI9i_1	124.12	122.33			3.8631	3.1458	NaN	1	0	Median	3.8631	3.1458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42944000	12418000	30526000	42944000	12418000	30526000	0	0	0	0	0	0	0	0	0	40171	1661	37797	246633	330825	330825		1346	1	
NVTNNLK	1	Unmodified	801.43447	0.43446642	2069;858	P06753;P67936	TPM3;TPM4	Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	4	8	2							4	4	4	2	10.431	9.9579	2	0.012699	7702	160511_QHF_FH_JSI11i_1	73.039	50.019			1.2214	1.519	78.317	13	8	Median	2.0517	1.6816	103.9	4	3	Median	1.5273	1.8182	43.156	4	2	Median	1.1546	1.1359	104.83	3	2	Median	1.9572	2.1345	107.05	2	1	Median	5622500000	2593700000	3028800000	1379800000	503670000	876160000	1516200000	833910000	682260000	1427400000	649820000	777540000	1299100000	606290000	692800000	40172	858;2069	37798	246634;246635;246636;246637;246638;246639;246640;246641;246642;246643;246644;246645;246646;246647	330826;330827;330828;330829;330830;330831;330832;330833;330834;330835;330836;330837;330838;330839	330826			14	
NVTSWFTSK	1	Unmodified	1068.524	0.52400971	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.021	57.687	2	0.012706	49484	160511_QHF_FH_JSI12i_2	47.187	33.184			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40173	280	37799	246648	330840	330840			1	
NVTVKTIK	2	Acetyl (K)	943.57023	0.57023162	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		40.2	30.273	2	0.034285	18386	160513_QHF_FH_JSI11Kac_4	60.91	34.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3271800	3271800	0	0	0	0	0	0	0	3271800	3271800	0	0	0	0	40174	4309	37800	246649	330841	330841			1	
NVTVQPDDPISFMQLTAK	1	Unmodified	2003.0034	0.0033774035	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	95.214	94.993	2;3	5.3108E-07	86249	160511_QHF_FH_JSI11i_1	119.01	97.256			0.74865	0.72788	57.409	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1536	1.311	NaN	1	1	Median	0.69219	0.66188	NaN	1	0	Median	0.51492	0.51241	63.086	2	1	Median	68327000	36503000	31824000	0	0	0	22145000	7407500	14738000	21031000	11769000	9261900	25150000	17326000	7824100	40175	1804	37801	246650;246651;246652;246653	330842;330843;330844;330845;330846	330842			5	
NVTWVIVNLCR	0	Unmodified	1372.7285	0.72853995	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.899	78.273	2	1.6378E-10	43616	160513_QHF_FH_JSI10Kac_6	127.4	99.77			0.1168	0.13779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.1168	0.13779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47333000	43054000	4279500	0	0	0	47333000	43054000	4279500	0	0	0	0	0	0	40176	147	37802	246654	330847	330847			1	
NVTWVMVNLCR	0	Unmodified	1390.685	0.68496057	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.239	75.642	2	3.7673E-11	41629	160513_QHF_FH_JSI10Kac_6	135.43	104.86			0.15532	0.18214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15532	0.18214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49583000	41619000	7964200	0	0	0	49583000	41619000	7964200	0	0	0	0	0	0	40177	158	37803	246655	330848	330848			1	
NVVAECLGK	1	Unmodified	988.50117	0.50116577	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.017	29.701	2	0.00076029	25090	160511_QHF_FH_JSI12i_2	85.676	72.097			0.86399	0.97015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86399	0.97015	NaN	1	1	Median	94132000	47837000	46295000	0	0	0	0	0	0	0	0	0	94132000	47837000	46295000	40178	3343	37804	246656	330849	330849			1	
NVVALDTEVASNR	0	Unmodified	1386.7103	0.71030693	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.22	5	8					1			2	5	4	3	46.388	45.649	2	1.3106E-09	40057	160511_QHF_FH_JSI10i_2	110.86	83.115			0.21515	0.60507	105.3	10	10	Plateau	0.61961	0.56023	NaN	1	1	Median	0.5532	0.63705	96.818	2	2	Median	0.74484	0.74794	165.21	4	4	Median	0.30993	0.35299	61.532	3	3	Plateau	380240000	239700000	140530000	47293000	28170000	19123000	106140000	74900000	31242000	133490000	87063000	46429000	93309000	49569000	43739000	40179	787	37805	246657;246658;246659;246660;246661;246662;246663;246664;246665;246666;246667;246668;246669;246670	330850;330851;330852;330853;330854;330855;330856;330857;330858;330859;330860;330861;330862;330863	330863			14	
NVVAVGTGGR	0	Unmodified	928.50903	0.50902834	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	18.188	17.614	2	0.00017566	14439	160511_QHF_FH_JSI12i_2	82.645	32.606			0.85955	1.0019	56.772	6	3	Median	1.311	1.1759	NaN	1	1	Median	0.59358	0.70389	28.112	2	0	Median	1.0614	1.0796	111.01	2	2	Median	1.0448	1.169	NaN	1	0	Median	465060000	236500000	228560000	46737000	19243000	27494000	155760000	106710000	49053000	144200000	53819000	90380000	118370000	56735000	61633000	40180	3947	37806	246671;246672;246673;246674;246675;246676;246677	330864;330865;330866;330867;330868;330869;330870;330871	330865			8	
NVVFVDMGHSAYQVSVCAFNR	0	Unmodified	2399.1151	0.11506989	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2		1	1	4	85.288	81.77	3	1.003E-21	42238	160513_QHF_FH_JSI10Kac_6	137.42	124			0.81182	0.97627	66.11	5	3	Median	NaN	NaN	NaN	0	0	Median	0.81182	0.97627	NaN	1	0	Median	0.97867	0.98596	NaN	1	0	Median	0.7791	0.82321	93.484	3	3	Median	197960000	105000000	92959000	0	0	0	145320000	80165000	65152000	24170000	10292000	13879000	28470000	14542000	13929000	40181	1417	37807	246678;246679;246680;246681;246682;246683	330872;330873;330874;330875;330876;330877;330878	330878			7	
NVVGGQR	0	Unmodified	728.39294	0.39293595	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.11	6.37		4					1	4		2	2	3	2	5.4548	0.2384	2	0.0031651	2868	160511_QHF_FH_JSI9i_2	106.29	63.286			0.96895	1.0178	14.74	9	0	Median	1.2733	1.0799	11.73	2	0	Median	0.74077	0.90046	22.258	2	0	Median	0.97607	1.0178	9.1738	3	0	Plateau	1.0322	1.1395	10.127	2	0	Median	4471600000	2045900000	2425700000	1080500000	416780000	663720000	868670000	461720000	406950000	1073700000	500520000	573160000	1448800000	666940000	781840000	40182	1385	37808	246684;246685;246686;246687;246688;246689;246690;246691;246692	330879;330880;330881;330882;330883;330884;330885;330886;330887;330888	330883			10	
NVVHELR	0	Unmodified	865.477	0.47699993	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	12.245	11.727	2	0.0167	9212	160511_QHF_FH_JSI12i_2	62.659	21.356			1.7799	1.9075	57.011	3	1	Median	0.98187	0.83317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.476	2.485	NaN	1	1	Median	1.7799	1.9075	NaN	1	0	Median	258830000	103460000	155370000	54895000	31901000	22994000	0	0	0	121820000	54311000	67505000	82123000	17251000	64872000	40183	2517	37809	246693;246694;246695	330889;330890	330889			2	
NVVHQLSVTLEDLYNGATRK	1	Unmodified	2256.1862	0.18624423	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			101.07	100.9	3;4	8.8656E-09	83536	160511_QHF_FH_JSI10i_3	106.71	97.78			0.76447	0.86735	8.5487	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76447	0.86735	8.5487	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193950000	115900000	78050000	0	0	0	193950000	115900000	78050000	0	0	0	0	0	0	40184	1376	37810	246696;246697	330891;330892;330893	330891			3	
NVVLPTETEVAPAK	1	Unmodified	1466.7981	0.7980593	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.56	11					5				2	5	4	5	57.934	54.774	2;3	1.2467E-09	49494	160511_QHF_FH_JSI11i_1	143.79	109.83			0.96295	0.88595	40.245	14	7	Median	1.0936	0.89741	8.2582	2	0	Median	0.74416	0.88276	45.868	4	2	Median	1.1747	1.1353	39.941	4	3	Median	0.93771	1.004	55.401	4	2	Median	2049600000	990790000	1058800000	509650000	217200000	292460000	522370000	262540000	259830000	448420000	208370000	240060000	569100000	302690000	266410000	40185	1298	37811	246698;246699;246700;246701;246702;246703;246704;246705;246706;246707;246708;246709;246710;246711;246712;246713	330894;330895;330896;330897;330898;330899;330900;330901;330902;330903;330904;330905;330906;330907;330908;330909;330910;330911;330912;330913;330914;330915;330916	330897			23	
NVVMFVAQVLVGK	1	Unmodified	1402.8006	0.80064226	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	3	2	4	99.706	94.428	2;3	1.5306E-47	48726	160513_QHF_FH_JSI12Kac_6	229.17	191.61			1.4618	1.5042	255.52	8	8	Median	3.4289	2.9312	428.75	2	2	Median	1.1351	1.2989	332.84	2	2	Median	11.253	10.304	NaN	1	1	Median	0.40616	0.43572	209.31	3	3	Median	1429000000	524460000	904580000	301450000	131660000	169790000	321000000	161740000	159250000	408500000	2807400	405700000	398090000	228250000	169840000	40186	3250	37812	246714;246715;246716;246717;246718;246719;246720;246721;246722;246723;246724	330917;330918;330919;330920;330921;330922;330923;330924;330925;330926;330927	330925			11	
NVVMFVAQVLVGK	1	Oxidation (M)	1418.7956	0.79555688	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	96.281	86.839	2	2.1287E-15	47300	160513_QHF_FH_JSI12Kac_6	142	123.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40187	3250	37812	246725	330928	330928		2232	1	
NVVMVNQGLTK	1	Unmodified	1201.6489	0.64889264	1058	P14635	CCNB1	G2/mitotic-specific cyclin-B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4									2	1	2	42.088	41.171	2	0.0028079	35099	160511_QHF_FH_JSI12i_2	70.977	50.648			0.89032	1.0997	58.367	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0034	1.1977	12.068	2	2	Median	0.50432	0.49508	NaN	1	1	Median	1.2212	1.3334	79.63	2	2	Median	217240000	125300000	91933000	0	0	0	107400000	55214000	52188000	41563000	30993000	10570000	68272000	39097000	29175000	40188	1058	37813	246726;246727;246728;246729;246730	330929;330930;330931;330932;330933	330929			5	
NVVTIFSAPNYCYR	0	Unmodified	1702.8137	0.81372614	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.78		4						1	5	2	3	3	2	78.177	72.639	2	2.7864E-21	65489	160511_QHF_FH_JSI12i_2	172.34	155.7			0.82314	0.89468	38.693	10	5	Median	0.81424	0.7013	38.607	2	2	Median	0.74517	0.89536	2.1683	3	1	Plateau	0.89974	0.84522	66.404	3	2	Median	1.0841	1.1776	21.145	2	0	Median	941900000	456910000	484990000	78378000	33439000	44939000	241120000	128120000	113000000	461340000	218440000	242900000	161060000	76907000	84151000	40189	2014;2065	37814	246731;246732;246733;246734;246735;246736;246737;246738;246739;246740	330934;330935;330936;330937;330938;330939;330940;330941;330942;330943;330944;330945;330946	330935			13	
NVVVAGR	0	Unmodified	713.41842	0.41842242	1047	P13995;Q9H903	MTHFD2;MTHFD2L	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	no	0	0	0	0			By MS/MS		2	0		1										1		11.193	10.992	2	0.055564	8438	160511_QHF_FH_JSI11i_2	46.663	21.106			1.0133	1.0183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0133	1.0183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132400000	74960000	57438000	0	0	0	0	0	0	132400000	74960000	57438000	0	0	0	40190	1047	37815	246741	330947	330947			1	
NVVVFDK	1	Unmodified	819.44905	0.44905385	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.67	5.91	3	3					3				4	2	3	39.751	35.905	2	0.01483	32219	160511_QHF_FH_JSI11i_1	65.252	32.782			2.0445	2.4179	98.91	9	9	Median	NaN	NaN	NaN	0	0	Median	0.93806	1.1147	120.23	4	4	Median	2.2559	2.2398	40.029	2	2	Median	3.0495	3.3086	109.68	3	3	Median	2173600000	883130000	1290400000	0	0	0	408260000	219940000	188320000	1015300000	343210000	672100000	749980000	319980000	430000000	40191	5426	37816	246742;246743;246744;246745;246746;246747;246748;246749;246750	330948;330949;330950;330951;330952;330953;330954;330955;330956	330948			9	
NVVVVDGVR	0	Unmodified	955.54508	0.5450795	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	6.07	5	8				1	3	3		4	5	4	7	37.421	34.422	2	0.0041286	30432	160511_QHF_FH_JSI10i_2	68.224	41.621			0.94654	1.0225	85.199	17	13	Median	2.5026	2.1807	81.296	4	4	Median	0.58465	0.70184	62.642	4	3	Median	1.1198	1.1096	62.703	4	3	Median	0.94654	1.0225	115.84	5	3	Median	1830500000	997160000	833380000	288480000	117490000	170990000	475070000	284170000	190900000	627060000	328740000	298320000	439920000	266760000	173160000	40192	1848	37817	246751;246752;246753;246754;246755;246756;246757;246758;246759;246760;246761;246762;246763;246764;246765;246766;246767;246768;246769;246770	330957;330958;330959;330960;330961;330962;330963;330964;330965;330966;330967;330968;330969;330970;330971;330972;330973;330974;330975;330976;330977;330978;330979	330978			23	
NVVYPLYR	0	Unmodified	1022.5549	0.5549159	2737	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.584	47.071	2	0.0045885	40543	160511_QHF_FH_JSI11i_2	66.993	38.886			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40193	2737	37818	246771	330980	330980			1	
NVWSFLK	1	Unmodified	892.48069	0.48068833	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	76.122	75.323	2	0.010062	66102	160511_QHF_FH_JSI11i_2	81.635	61.353			0.14075	0.167	238.27	6	6	Median	1.6026	1.3636	367.08	2	2	Median	0.15533	0.19315	NaN	1	1	Median	1.1249	1.1461	307.18	2	2	Median	0.12754	0.14439	NaN	1	1	Median	465620000	252370000	213250000	92145000	35493000	56652000	98684000	72752000	25931000	206590000	86574000	120020000	68194000	57548000	10646000	40194	636	37819	246772;246773;246774;246775;246776;246777	330981;330982;330983;330984;330985;330986;330987	330985			7	
NVWVFLATSGTLAGIMGMR	0	2 Oxidation (M)	2055.0282	0.028152366	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	2	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		3	1	1	96.009	88.808	2;3	2.4756E-08	51951	160513_QHF_FH_JSI10Kac_6	163.27	127.62			3.7211	3.9646	101.44	3	3	Median	NaN	NaN	NaN	0	0	Median	9.2774	10.887	NaN	1	1	Median	1.4907	1.4317	NaN	1	1	Median	3.7211	3.9646	NaN	1	1	Median	354750000	119700000	235050000	0	0	0	194910000	53762000	141140000	115070000	61206000	53865000	44773000	4732300	40041000	40195	5187	37820	246778;246779;246780;246781;246782	330988;330989;330990;330991;330992	330991		2601;2602	5	
NVWVFLATSGTLAGIMGMR	0	Unmodified	2023.0383	0.038323122	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									7	2	4	1		100.31	93.082	2;3	1.93E-103	55663	160513_QHF_FH_JSI10Kac_6	231.69	208.81			0.37833	0.44778	180.94	5	3	Median	0.36926	0.31509	NaN	1	1	Median	0.37833	0.44778	234.95	3	1	Median	2.1829	2.0037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	758570000	376650000	381920000	186390000	83617000	102770000	513960000	274010000	239950000	58222000	19024000	39198000	0	0	0	40196	5187	37820	246783;246784;246785;246786;246787;246788;246789	330993;330994;330995;330996;330997;330998;330999	330997			7	
NVWVFLATSGTLAGIMGMR	0	Oxidation (M)	2039.0332	0.033237744	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									3	1	2			98.227	91.369	3	0.00020705	53339	160513_QHF_FH_JSI10Kac_6	83.253	75.031			0.49462	0.59368	137.75	3	3	Median	5.4655	4.6842	NaN	1	1	Median	0.38046	0.45188	38.599	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207500000	130090000	77414000	51438000	6870800	44568000	156060000	123220000	32847000	0	0	0	0	0	0	40197	5187	37820	246790;246791;246792	331000;331001;331002	331001		2601;2602	3	
NVYAIIMLTK	1	Unmodified	1164.6577	0.65766641	2327	Q12913	PTPRJ	Receptor-type tyrosine-protein phosphatase eta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	86.193	77.067	2	0.0085582	41232	160513_QHF_FH_JSI12Kac_6	67.726	46.262			4.1388	3.5371	NaN	1	1	Median	4.1388	3.5371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78086000	4235000	73851000	39971000	4235000	35736000	0	0	0	24490000	0	24490000	13625000	0	13625000	40198	2327	37821	246793;246794;246795	331003;331004;331005	331005			3	
NVYDSISK	1	Unmodified	924.45526	0.45526144	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.81	23.13	2	0.0067864	20084	160511_QHF_FH_JSI11i_1	59.245	41.684			0.61251	0.63592	42.164	3	3	Median	0.77518	0.63592	NaN	1	1	Median	0.26738	0.3111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61251	0.65515	NaN	1	1	Median	136520000	80029000	56488000	35892000	18122000	17770000	40036000	30246000	9790000	0	0	0	60588000	31660000	28928000	40199	1239;1168;2177;2758	37822	246796;246797;246798;246799	331006;331007;331008;331009	331006			4	
NVYLFPGIPELLRR	0	Unmodified	1685.9617	0.96171101	3655	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.483	83.763	3	0.013294	47501	160513_QHF_FH_JSI10Kac_6	45.434	34.49			0.33351	0.39795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33351	0.39795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19554000	16472000	3081900	0	0	0	19554000	16472000	3081900	0	0	0	0	0	0	40200	3655	37823	246800	331010	331010			1	
NVYNSWTYNVQYWK	1	Unmodified	1863.858	0.8580338	2267	Q08334	IL10RB	Interleukin-10 receptor subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	80.503	72.371	2	1.7392E-67	37861	160513_QHF_FH_JSI12Kac_6	223.14	204.04			0.7629	0.90951	16.952	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7629	0.90951	NaN	1	0	Median	1.3167	1.2709	NaN	1	0	Median	1.0426	1.1273	NaN	1	0	Median	107510000	55883000	51632000	0	0	0	63322000	35619000	27703000	18919000	9009300	9910000	25273000	11255000	14019000	40201	2267	37824	246801;246802;246803	331011;331012;331013	331012			3	
NVYSSSR	0	Unmodified	811.38243	0.38243085	535	O75494	SRSF10	Serine/arginine-rich splicing factor 10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	5.7645	5.3812	2	0.012047	3305	160511_QHF_FH_JSI12i_2	69.998	54.559			1.309	1.3479	34.656	4	0	Median	1.7343	1.5237	NaN	1	0	Median	1.3481	1.6269	NaN	1	0	Median	1.2711	1.1924	NaN	1	0	Median	0.67265	0.75715	NaN	1	0	Median	432920000	198910000	234000000	130920000	50482000	80439000	73642000	34849000	38794000	71418000	28690000	42728000	156930000	84890000	72044000	40202	535	37825	246804;246805;246806;246807;246808	331014;331015	331014			2	
NVYTEIK	1	Unmodified	865.45453	0.45453316	2549;2547;2546	Q14571;Q14573;Q14643	ITPR2;ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	25.275	24.474	2	0.036665	20367	160511_QHF_FH_JSI12i_2	50.127	28.826			0.73024	0.7043	30.732	7	3	Median	0.96288	0.80454	41.231	2	1	Median	0.65212	0.78456	34.594	2	0	Median	0.68988	0.7043	NaN	1	1	Median	0.79173	0.833	50.739	2	1	Median	665830000	382300000	283530000	131700000	70061000	61635000	185800000	107450000	78356000	139340000	92952000	46391000	208990000	111840000	97150000	40203	2546;2547;2549	37826	246809;246810;246811;246812;246813;246814;246815	331016;331017;331018;331019	331016			4	
NWACFTGK	1	Unmodified	982.43309	0.43308621	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.156	42.775	2	0.011949	36540	160511_QHF_FH_JSI12i_2	62.546	33.208			2.1316	2.3421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1316	2.3421	NaN	1	1	Median	55749000	23241000	32508000	0	0	0	0	0	0	0	0	0	55749000	23241000	32508000	40204	1806	37827	246816	331020	331020			1	
NWADAQTQIQNIAASFDQEAAAILMAR	0	Unmodified	2946.4294	0.4294044	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.48	103.38	3	7.2721E-18	91140	160511_QHF_FH_JSI11i_2	107.19	99.792			0.92216	0.95489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92216	0.95489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35506000	18357000	17149000	0	0	0	0	0	0	35506000	18357000	17149000	0	0	0	40205	2674	37828	246817	331021	331021			1	
NWADVQSQLR	0	Unmodified	1215.5996	0.59963426	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	49.942	48.982	2	6.5274E-06	42281	160511_QHF_FH_JSI11i_2	107.9	99.439			1.578	2.6372	26.708	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4547	1.7817	NaN	1	1	Median	2.7646	2.7619	NaN	1	0	Median	1.578	1.7031	NaN	1	1	Median	168670000	58308000	110360000	0	0	0	58502000	20449000	38053000	53582000	10738000	42844000	56587000	27121000	29466000	40206	2675	37829	246818;246819;246820	331022;331023;331024	331023			3	
NWDDVLTVDYTR	0	Unmodified	1495.6943	0.69432251	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.418	75.245	2	0.010308	68252	160511_QHF_FH_JSI10i_1	57.164	50.139			1.5672	1.8416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5672	1.8416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28221000	9424900	18797000	0	0	0	28221000	9424900	18797000	0	0	0	0	0	0	40207	2344	37830	246821	331025	331025			1	
NWEAMEALASTEK	1	Unmodified	1478.6711	0.67114423	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.512	72.236	2	0.00070596	62293	160511_QHF_FH_JSI12i_2	82.85	65.754			0.80082	0.91984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80082	0.91984	NaN	1	1	Median	54050000	34671000	19380000	0	0	0	0	0	0	0	0	0	54050000	34671000	19380000	40208	3328	37831	246822	331026	331026			1	
NWLKEGHPVTSEPSRPEPAVFK	2	Acetyl (K)	2546.2918	0.29177193	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		68.818	59.256	4	0.017709	32127	160513_QHF_FH_JSI11Kac_6	45.011	32.952			0.46067	0.44788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46067	0.44788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14648000	13004000	1643600	0	0	0	0	0	0	14648000	13004000	1643600	0	0	0	40209	2760	37832	246823	331027	331027	2670		1	
NWLLAMAAK	1	Unmodified	1016.5477	0.54772204	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	76.863	75.935	2	0.0071216	65750	160511_QHF_FH_JSI12i_2	62.464	47.204			3.9371	4.3264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9371	4.3264	NaN	1	1	Median	13823000	2134100	11689000	0	0	0	0	0	0	5362400	0	5362400	8460900	2134100	6326800	40210	5154	37833	246824;246825	331028;331029	331028			2	
NWMFSNAK	1	Unmodified	996.44874	0.44873627	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	46.786	45.791	2	0.0051794	39374	160511_QHF_FH_JSI12i_2	66.429	62.495			1.0463	1.0417	10.79	5	2	Median	1.1755	1.0333	8.6135	2	2	Median	0.84571	1.0417	NaN	1	0	Median	0.90981	0.911	NaN	1	0	Median	1.0463	1.2043	NaN	1	0	Median	335090000	162470000	172620000	91163000	44137000	47025000	71898000	36318000	35579000	105720000	51590000	54127000	66313000	30427000	35886000	40211	3432	37834	246826;246827;246828;246829;246830	331030;331031;331032;331033;331034;331035;331036;331037	331031			8	
NWMLVEK	1	Unmodified	918.46332	0.4633237	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	55.248	54.303	2	0.016256	47893	160511_QHF_FH_JSI10i_2	63.48	23.937			2.2114	1.9442	96.486	5	5	Median	2.2114	1.9201	NaN	1	1	Median	0.73949	0.90324	108.42	2	2	Median	5.4123	5.442	NaN	1	1	Median	3.053	3.4041	NaN	1	1	Median	484230000	207580000	276660000	78201000	33403000	44798000	190560000	99664000	90895000	117200000	32563000	84641000	98271000	41945000	56326000	40212	1856	37835	246831;246832;246833;246834;246835	331038;331039;331040;331041;331042	331041			5	
NWMNSLGVNPHVNHLYADLQDALVILQLYER	0	Unmodified	3634.8355	0.83547122	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.924	89.79	4	9.3929E-15	51637	160513_QHF_FH_JSI9Kac_6	87.772	77.725			1.2684	1.064	NaN	1	0	Median	1.2684	1.064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173420000	76960000	96461000	173420000	76960000	96461000	0	0	0	0	0	0	0	0	0	40213	1039	37836	246836	331043	331043			0	
NWMVGGEGGAGGR	0	Unmodified	1246.5513	0.55130386	3149	Q6UW78	UQCC3	Ubiquinol-cytochrome-c reductase complex assembly factor 3	yes	yes	0	0	0	0		By MS/MS		By matching	2	0		2									1		1	37.106	35.95	2	0.01165	31688	160511_QHF_FH_JSI10i_2	46.844	42.827			0.77395	0.91351	9.9159	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69216	0.85165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8654	0.97986	NaN	1	0	Median	94902000	52337000	42565000	0	0	0	46112000	27721000	18392000	0	0	0	48790000	24616000	24174000	40214	3149	37837	246837;246838	331044	331044			1	
NWNSLAVTHPGYMAFLTYDEVK	1	Unmodified	2555.2155	0.21549544	1214	P22681	CBL	E3 ubiquitin-protein ligase CBL	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	88.91	79.467	3	0.05561	42639	160513_QHF_FH_JSI12Kac_6	19.437	3.4948			0.86055	0.90921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86055	0.90921	NaN	1	0	Median	67002000	35978000	31024000	0	0	0	0	0	0	0	0	0	67002000	35978000	31024000	40215	1214	37838	246839	331045	331045			1	
NWNSPVANFIMESQR	0	Unmodified	1791.8363	0.8362525	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				89.633	89.229	2	1.6048E-07	78586	160511_QHF_FH_JSI9i_2	93.011	77.121			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40216	3119	37839	246840	331046	331046			1	
NWPSDEMPDFPK	1	Unmodified	1461.6235	0.62346575	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.387	70.855	2	0.00094016	63173	160511_QHF_FH_JSI9i_1	66.595	63.863			0.78261	0.77652	16.678	4	3	Median	0.76719	0.63568	NaN	1	0	Median	0.79833	0.93485	NaN	1	1	Median	0.85429	0.83046	NaN	1	1	Median	0.7011	0.72609	NaN	1	1	Median	311250000	166080000	145160000	56839000	28114000	28725000	92661000	48769000	43891000	87327000	50253000	37074000	74420000	38944000	35476000	40217	2261	37840	246841;246842;246843;246844	331047;331048;331049;331050	331050			4	
NWQYQETIK	1	Unmodified	1208.5826	0.58258722	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.4	5.31	1	3						1		1	2		2	41.274	40.549	2	1.0438E-07	35610	160511_QHF_FH_JSI10i_2	125.31	112.73			1.4249	1.4239	19.733	2	0	Median	1.8811	1.6371	NaN	1	0	Median	1.0794	1.2384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	599620000	261360000	338260000	279130000	94195000	184940000	320490000	167160000	153320000	0	0	0	0	0	0	40218	2598	37841	246845;246846;246847;246848;246849	331051;331052;331053;331054;331055	331055			5	
NWSEDDLQLLIK	1	Unmodified	1472.7511	0.75110911	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	90.829	89.958	2	0.00033458	77649	160511_QHF_FH_JSI12i_2	72.006	54.57			1.2899	1.4228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2899	1.4228	NaN	1	0	Median	14889000	8959300	5929600	0	0	0	0	0	0	0	0	0	14889000	8959300	5929600	40219	4282	37842	246850	331056	331056			1	
NWSLIGSVLGALIGVAGSTYVNR	0	Unmodified	2346.2696	0.26957993	4055	Q96ER9	CCDC51	Coiled-coil domain-containing protein 51	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			104.18	97.293	3	3.7195E-58	58208	160513_QHF_FH_JSI10Kac_6	180.64	165.71			2.6232	3.1419	386.68	2	2	Median	NaN	NaN	NaN	0	0	Median	2.6232	3.1419	386.68	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1021700000	515630000	506100000	141500000	0	141500000	880230000	515630000	364600000	0	0	0	0	0	0	40220	4055	37843	246851;246852;246853	331057;331058;331059	331058			3	
NWSYLGVPIVPQSQQGK	1	Unmodified	1899.9843	0.98429694	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	85.352	84.541	2	6.8001E-06	74318	160511_QHF_FH_JSI11i_2	109.84	94.305			0.93531	0.97235	20.054	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1336	1.1205	NaN	1	1	Median	0.7717	0.8438	NaN	1	0	Median	34107000	13203000	20904000	0	0	0	0	0	0	18180000	6558900	11621000	15927000	6644300	9282400	40221	104	37844	246854;246855	331060;331061	331061			2	
NWTIHTWIR	0	Unmodified	1225.6356	0.63562584	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	70.504	61.783	2;3	9.856E-06	32746	160513_QHF_FH_JSI9Kac_6	110.14	95.675			0.84972	0.92186	36.606	9	1	Median	0.64275	0.54987	73.074	2	0	Median	0.84972	1.0159	11.446	3	0	Median	0.98471	0.95926	1.7035	2	1	Median	0.82624	0.88655	1.4097	2	0	Median	1164300000	557490000	606790000	97170000	45400000	51770000	869680000	421560000	448110000	85448000	36209000	49239000	111980000	54316000	57665000	40222	3844	37845	246856;246857;246858;246859;246860;246861;246862;246863;246864	331062;331063;331064;331065;331066;331067;331068;331069;331070;331071;331072;331073;331074;331075;331076	331066			15	
NWVVTGADDMQIR	0	Unmodified	1503.714	0.71401209	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	1	1	2	67.114	66.094	2	5.4795E-05	58675	160511_QHF_FH_JSI10i_2	109.6	91.735			0.9137	0.92708	14.249	5	1	Median	1.0513	0.89808	19.222	2	1	Median	0.91781	1.1356	NaN	1	0	Median	0.91276	0.92708	NaN	1	0	Median	0.78361	0.88071	NaN	1	0	Median	736350000	351240000	385110000	149410000	67462000	81944000	165900000	62927000	102980000	261530000	131170000	130360000	159520000	89682000	69834000	40223	1438	37846	246865;246866;246867;246868;246869;246870	331077;331078;331079;331080	331080			4	
NWVVTGADDMQIR	0	Oxidation (M)	1519.7089	0.70892672	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			52.709	51.769	2	0.042679	45689	160511_QHF_FH_JSI10i_2	57.348	50.815			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8736000	8736000	0	0	0	0	8736000	8736000	0	0	0	0	0	0	0	40224	1438	37846	246871	331081	331081			1	
NWVVVGGLNTHYR	0	Unmodified	1513.779	0.77899561	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	2	3	68.201	59.203	2;3	3.3197E-12	32425	160513_QHF_FH_JSI10Kac_6	125.72	110.52			1.0827	1.0902	13.522	8	1	Median	1.3784	1.1735	1.5601	2	0	Median	0.85121	0.99995	11.619	2	0	Median	1.0827	1.0515	5.7205	2	0	Median	0.91346	0.97987	26.822	2	1	Median	440520000	216090000	224440000	50287000	18392000	31896000	223190000	114090000	109090000	125060000	62464000	62600000	41982000	21136000	20846000	40225	3960	37847	246872;246873;246874;246875;246876;246877;246878;246879;246880	331082;331083;331084;331085;331086;331087;331088;331089;331090;331091;331092;331093	331092			12	
NWYLPAPEVSPR	0	Unmodified	1427.7197	0.7197494	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	73.734	72.929	2	0.00018022	63862	160511_QHF_FH_JSI11i_2	80.763	58.677			1.6803	1.7323	75.801	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1034	2.9608	NaN	1	0	Median	0.90984	1.0136	NaN	1	0	Median	102720000	44096000	58625000	0	0	0	0	0	0	38735000	11186000	27549000	63986000	32910000	31076000	40226	3248	37848	246881;246882;246883	331094;331095	331095			1	
NYAAALETFTEGQK	1	Unmodified	1541.7362	0.73618733	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	70.62	69.713	2	0.00021429	60806	160511_QHF_FH_JSI11i_2	106.67	80.284			0.63057	0.71296	89.274	7	7	Median	1.5401	1.3272	126.6	2	2	Median	0.57906	0.71296	NaN	1	1	Median	1.2267	1.2343	121.52	2	2	Median	1.2122	1.3521	117.52	2	2	Median	417080000	186900000	230180000	89163000	32816000	56346000	58933000	30056000	28877000	161380000	80942000	80433000	107610000	43086000	64524000	40227	5548	37849	246884;246885;246886;246887;246888;246889;246890	331096;331097;331098;331099;331100;331101;331102;331103	331101			8	
NYAFEIPDVPEK	1	Unmodified	1420.6874	0.68744622	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.405	73.911	2	5.0154E-05	66927	160511_QHF_FH_JSI10i_1	116.55	98.211			0.88711	0.99811	24.175	4	0	Median	0.73443	0.6162	NaN	1	0	Median	0.84276	0.99893	NaN	1	0	Median	1.0365	1.0017	NaN	1	0	Median	0.93379	0.99729	NaN	1	0	Median	310600000	165750000	144850000	66530000	43514000	23015000	58945000	31828000	27117000	77268000	38537000	38731000	107860000	51869000	55989000	40228	940	37850	246891;246892;246893;246894	331104;331105;331106;331107	331106			3	
NYAGEEEEEGSGSSEGFDPPATDR	0	Unmodified	2529.0052	0.0051641351	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	42.909	42.303	2;3	1.5378E-23	38340	160511_QHF_FH_JSI12i_1	145.91	143.62			1.0105	1.1085	22.467	5	1	Median	2.153	1.7323	NaN	1	1	Median	0.88098	1.0413	8.8328	2	0	Median	1.3595	1.3279	NaN	1	0	Median	1.0105	1.0846	NaN	1	0	Median	207830000	100450000	107380000	11059000	2546100	8512500	102130000	53901000	48225000	54681000	20099000	34582000	39968000	23905000	16063000	40229	1106	37851	246895;246896;246897;246898;246899	331108;331109;331110;331111;331112;331113;331114;331115	331111			8	
NYAQVFNK	1	Unmodified	982.48723	0.48723027	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	1	3	1	34.846	34.069	2	0.0018874	29873	160511_QHF_FH_JSI10i_2	84.244	68.983			1.2467	1.1541	18.848	7	2	Median	1.5554	1.3118	18.695	2	1	Median	0.93356	1.1541	NaN	1	0	Median	1.4278	1.4142	22.149	3	1	Plateau	0.84215	0.9632	NaN	1	0	Median	1504800000	635550000	869290000	290220000	118830000	171380000	282680000	138280000	144410000	618340000	244070000	374270000	313600000	134370000	179230000	40230	5722	37852	246900;246901;246902;246903;246904;246905;246906	331116;331117;331118;331119;331120;331121;331122;331123;331124;331125;331126;331127	331126			12	
NYAQVFNKLIR	1	Acetyl (K)	1406.767	0.76703394	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.461	75.144	2	8.9176E-11	41609	160513_QHF_FH_JSI11Kac_6	134.05	113.91			0.31286	0.31103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31286	0.31103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37730000	28479000	9251000	0	0	0	0	0	0	37730000	28479000	9251000	0	0	0	40231	5722	37853	246907	331128	331128	3539		1	
NYCNIQVTK	1	Unmodified	1138.5441	0.54409322	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	29.285	28.841	2	0.0049495	25575	160511_QHF_FH_JSI11i_1	57.708	46.218			0.95411	1.0527	8.3415	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95912	1.1166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94913	0.99239	NaN	1	1	Median	129290000	63695000	65592000	0	0	0	50382000	23357000	27025000	0	0	0	78904000	40338000	38567000	40232	1620	37854	246908;246909;246910;246911	331129;331130;331131;331132	331130			4	
NYDESGSPR	0	Unmodified	1023.4258	0.42575222	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.7135	7.4784	2	0.0031278	5744	160511_QHF_FH_JSI10i_1	61.679	44.293			0.81259	0.78635	20.89	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52366	0.61444	NaN	1	0	Median	0.81259	0.78635	NaN	1	0	Median	0.88491	0.93084	NaN	1	0	Median	1169300000	558550000	610700000	0	0	0	194390000	101350000	93042000	528580000	226720000	301860000	446280000	230480000	215800000	40233	1943	37855	246912;246913;246914	331133	331133			1	
NYDLSFLK	1	Unmodified	998.5073	0.50729701	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	4.75	3	3						1		1	1	3	2	71.013	68.672	2	0.013113	62918	160511_QHF_FH_JSI12i_1	51.854	25.252			1.1317	1.0561	18.159	6	3	Median	1.1875	1.0318	NaN	1	0	Median	0.88141	1.0004	NaN	1	1	Median	1.3769	1.3356	15.899	3	1	Median	0.81383	0.92371	NaN	1	1	Median	237950000	116940000	121000000	56601000	23631000	32971000	24970000	14110000	10860000	103970000	52336000	51631000	52409000	26867000	25542000	40234	774	37856	246915;246916;246917;246918;246919;246920;246921	331134;331135;331136;331137;331138;331139;331140	331136			7	
NYDYYASR	0	Unmodified	1050.4407	0.44067401	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	24.229	23.575	2	0.042075	20515	160511_QHF_FH_JSI11i_1	39.022	35.088			1.3158	1.0803	14.065	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.83066	0.99273	NaN	1	0	Median	1.2377	1.2287	6.2405	2	0	Median	0.85556	0.95299	NaN	1	0	Median	143370000	72565000	70809000	0	0	0	18148000	12058000	6090400	97334000	44765000	52568000	27893000	15742000	12150000	40235	738	37857	246922;246923;246924;246925	331141;331142;331143	331141			3	
NYEDEDSLK	1	Unmodified	1111.4669	0.46694834	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	22.907	20.053	2	2.9829E-05	17540	160511_QHF_FH_JSI12i_1	102.51	99.122			1.1836	1.1496	18.563	6	0	Median	1.2738	1.0466	NaN	1	0	Median	0.80255	0.92762	NaN	1	0	Median	1.4088	1.3799	21.391	2	0	Median	1.1259	1.1753	7.5504	2	0	Median	466540000	217710000	248830000	109210000	53237000	55971000	98688000	51842000	46846000	122300000	50030000	72265000	136350000	62598000	73750000	40236	999	37858	246926;246927;246928;246929;246930;246931	331144;331145;331146;331147;331148;331149;331150;331151;331152;331153;331154;331155	331147			12	
NYEEIAK	1	Unmodified	865.41815	0.41814765	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	19.896	19.261	2	0.020299	16478	160511_QHF_FH_JSI11i_1	60.788	41.982			0.41017	0.3394	156.16	5	5	Median	1.5997	1.3201	192.09	2	2	Median	3.2989	3.9426	NaN	1	1	Median	0.25982	0.25146	NaN	1	1	Median	0.20824	0.2186	NaN	1	1	Median	3024900000	1369300000	1655600000	1073200000	365970000	707220000	707620000	208750000	498870000	645180000	417930000	227250000	598900000	376660000	222240000	40237	1678	37859	246932;246933;246934;246935;246936	331156;331157;331158;331159;331160	331156			5	
NYEIKNEADR	1	Acetyl (K)	1292.5997	0.59969384	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			38.444	29.587	2	0.003751	16403	160513_QHF_FH_JSI10Kac_3	73.885	48.264			0.79169	0.93345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79169	0.93345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2452500	1445000	1007500	0	0	0	2452500	1445000	1007500	0	0	0	0	0	0	40238	257	37860	246937	331161;331162	331162	142		2	
NYELMESEK	1	Unmodified	1141.4961	0.49613997	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.856	33.614	2	0.0097601	30154	160511_QHF_FH_JSI11i_1	59.931	50.717			1.8401	1.7817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8401	1.7817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60704000	23208000	37496000	0	0	0	0	0	0	60704000	23208000	37496000	0	0	0	40239	622	37861	246938	331163	331163			1	
NYFENTDILIYVIDSADRK	1	Unmodified	2288.1325	0.13247732	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	1	2	1	97.566	91.937	3	2.2065E-13	48992	160513_QHF_FH_JSI9Kac_6	128.13	112.36			0.92442	0.98236	21.863	6	2	Median	0.87996	0.74398	6.9022	2	0	Median	0.84911	1.0252	NaN	1	0	Median	1.0379	1.0139	10.514	2	1	Median	1.2178	1.2811	NaN	1	1	Median	1046200000	545670000	500510000	222590000	103450000	119130000	280020000	165920000	114100000	351400000	166090000	185310000	192170000	110200000	81971000	40240	1451	37862	246939;246940;246941;246942;246943;246944	331164;331165;331166;331167;331168;331169	331166			6	
NYFHLWTR	0	Unmodified	1135.5563	0.55631289	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									5	2	1	1	1	66.682	57.57	3	0.0063677	31468	160513_QHF_FH_JSI10Kac_6	43.308	37.767			0.78402	1.0332	4.4374	4	1	Linear	1.3042	1.1247	NaN	1	1	Median	0.87843	1.037	NaN	1	0	Median	1.0575	1.0232	NaN	1	0	Median	0.94302	1.0295	NaN	1	0	Median	78499000	36224000	42276000	13626000	5801000	7825200	46996000	21992000	25005000	8692600	3622600	5070000	9184100	4808300	4375800	40241	28	37863	246945;246946;246947;246948;246949	331170;331171;331172;331173	331172			4	
NYFLEEDNYK	1	Unmodified	1333.5826	0.5826468	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.75	0.433	1	3									1		3	52.691	51.693	2	3.714E-05	44128	160511_QHF_FH_JSI12i_2	105.4	84.771			0.91344	0.96275	28.949	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.89335	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1625	1.2732	39.521	2	1	Median	136050000	65349000	70704000	0	0	0	40512000	21572000	18940000	0	0	0	95541000	43777000	51764000	40242	2856	37864	246950;246951;246952;246953	331174;331175;331176	331174			2	
NYFLLSSSMDK	1	Unmodified	1303.6118	0.61183843	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.17	0.373		5	1							2		2	2	72.324	71.22	2	1.9394E-06	61508	160511_QHF_FH_JSI12i_2	121.5	111.55			2.1871	2.2099	122.37	5	5	Median	1.5074	1.2787	112.03	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1871	2.2099	NaN	1	1	Median	0.62291	0.69699	194.62	2	2	Median	440790000	194650000	246140000	94249000	30978000	63272000	0	0	0	171370000	73367000	98008000	175170000	90304000	84862000	40243	2902	37865	246954;246955;246956;246957;246958;246959	331177;331178;331179;331180;331181;331182;331183	331178			7	
NYGFVHIEDK	1	Unmodified	1220.5826	0.58258722	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	44.332	43.372	2;3	0.0013043	37100	160511_QHF_FH_JSI11i_2	77.662	66.511			1.1532	1.2749	31.46	6	4	Median	1.1058	0.93186	NaN	1	0	Median	1.2026	1.4721	NaN	1	1	Median	1.2396	1.259	36.691	2	2	Median	1.3716	1.5025	43.588	2	1	Median	498970000	265900000	233070000	67360000	29266000	38094000	31863000	19900000	11963000	254020000	147960000	106060000	145740000	68777000	76959000	40244	4498;4343	37866	246960;246961;246962;246963;246964;246965	331184;331185;331186;331187;331188;331189	331187			6	
NYGILADATEQVGQHK	1	Unmodified	1742.8588	0.85876208	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	1	2	3	59.246	58.308	2;3	2.2411E-13	51573	160511_QHF_FH_JSI10i_2	195.77	172.53			0.82691	0.81585	86.677	8	8	Median	3.3171	2.8207	98.552	3	3	Plateau	0.35746	0.44094	NaN	1	1	Median	1.015	1.0191	127.79	2	2	Median	0.74853	0.81474	87.21	2	2	Median	720270000	318500000	401770000	299730000	91173000	208560000	77608000	64889000	12719000	225580000	97049000	128530000	117360000	65392000	51967000	40245	4575	37867	246966;246967;246968;246969;246970;246971;246972;246973;246974	331190;331191;331192;331193;331194;331195;331196;331197;331198;331199;331200	331200			11	
NYGSYSTQASAAAATAELLK	1	Unmodified	2015.98	0.97999942	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	10	8								5	3	4	6	75.004	74.273	2;3	9.6277E-43	65310	160511_QHF_FH_JSI9i_2	204.52	191.96			0.9436	0.89673	38.665	16	9	Median	1.1664	0.95729	53.78	4	3	Median	0.63817	0.77038	15.927	2	0	Median	0.99907	0.98767	45.846	4	1	Median	0.82609	0.85864	36.137	6	5	Median	1304900000	715260000	589680000	227690000	128850000	98848000	157320000	105560000	51758000	462260000	245140000	217120000	457670000	235710000	221960000	40246	210	37868	246975;246976;246977;246978;246979;246980;246981;246982;246983;246984;246985;246986;246987;246988;246989;246990;246991;246992	331201;331202;331203;331204;331205;331206;331207;331208;331209;331210;331211;331212;331213;331214;331215;331216;331217;331218;331219;331220;331221;331222;331223;331224;331225;331226;331227;331228;331229;331230;331231	331219			31	
NYGVTFPIFHK	1	Unmodified	1321.6819	0.68190733	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							4	3	4	4	72.526	71.769	2;3	1.4988E-05	63729	160511_QHF_FH_JSI10i_2	93.258	85.347			1.02	1.0801	12.965	15	3	Median	1.2488	1.0528	23.6	4	2	Median	0.89345	1.0872	10.115	3	0	Plateau	1.0864	1.044	5.384	4	0	Median	1.0288	1.1051	8.2727	4	1	Median	1151100000	527520000	623630000	161890000	65950000	95941000	205480000	103720000	101760000	454000000	215870000	238140000	329770000	141980000	187790000	40247	3733	37869	246993;246994;246995;246996;246997;246998;246999;247000;247001;247002;247003;247004;247005;247006;247007	331232;331233;331234;331235;331236;331237;331238;331239;331240;331241;331242;331243;331244;331245;331246;331247;331248;331249;331250	331245			18	
NYGYNPSPVKPEGLR	1	Unmodified	1689.8475	0.84746911	2615	Q15047	SETDB1	Histone-lysine N-methyltransferase SETDB1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.63	42.407	3	0.045882	36209	160511_QHF_FH_JSI12i_3	33.265	14.901			0.67681	0.6901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67681	0.6901	NaN	1	1	Median	16346000	10016000	6329900	0	0	0	0	0	0	0	0	0	16346000	10016000	6329900	40248	2615	37870	247008	331251	331251			1	
NYHPIVVPGLGR	0	Unmodified	1320.7303	0.73025451	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				55.46	54.44	3	0.019603	47816	160511_QHF_FH_JSI9i_2	25.588	16.858			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40249	2305	37871	247009	331252	331252			1	
NYIAQNAIEAAER	0	Unmodified	1461.7212	0.72120596	4478	Q9BVL4	SELO	Selenoprotein O	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.58	52.195	2	1.7932E-05	44706	160511_QHF_FH_JSI12i_2	84.479	66.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40250	4478	37872	247010	331253	331253			1	
NYILDQTNVYGSAQR	0	Unmodified	1740.8431	0.84311201	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	56.68	55.824	2	3.5382E-07	48429	160511_QHF_FH_JSI11i_2	204.48	176.47			1.0378	1.1154	10.458	5	3	Median	1.3915	1.2377	NaN	1	0	Median	0.95552	1.1875	NaN	1	1	Median	1.0104	1.0225	11.778	2	2	Median	1.0378	1.1154	NaN	1	0	Median	249510000	127920000	121590000	36132000	14014000	22119000	48537000	30821000	17716000	120280000	60119000	60158000	44562000	22963000	21599000	40251	4442	37873	247011;247012;247013;247014;247015	331254;331255;331256;331257;331258;331259;331260	331259			7	
NYILSTQDR	0	Unmodified	1108.5513	0.55128709	1802	P53609	PGGT1B	Geranylgeranyl transferase type-1 subunit beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		32.046	31.657	2	0.016464	26915	160511_QHF_FH_JSI11i_2	53.493	30.065			1.1329	1.1441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1329	1.1441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27285000	11935000	15350000	0	0	0	0	0	0	27285000	11935000	15350000	0	0	0	40252	1802	37874	247016	331261	331261			1	
NYIQGINLVQAK	1	Unmodified	1359.751	0.75104953	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.31	4	4	3				3	5		3	4	6	6	68.732	63.657	2	2.3321E-31	56505	160511_QHF_FH_JSI10i_2	189.38	167.92			0.95974	0.97924	33.716	18	5	Median	1.0904	0.86515	17.063	3	0	Plateau	0.82861	1.0006	28.161	4	1	Median	0.87528	0.87723	18.106	5	2	Median	0.97043	1.061	49.762	6	2	Median	3849400000	1959000000	1890400000	665920000	316780000	349140000	928140000	544630000	383510000	1299900000	625390000	674530000	955460000	472220000	483250000	40253	1786	37875	247017;247018;247019;247020;247021;247022;247023;247024;247025;247026;247027;247028;247029;247030;247031;247032;247033;247034;247035	331262;331263;331264;331265;331266;331267;331268;331269;331270;331271;331272;331273;331274;331275;331276;331277;331278;331279;331280;331281;331282;331283;331284;331285;331286;331287;331288;331289;331290;331291;331292	331288			31	
NYIQGINLVQAKK	2	Acetyl (K)	1529.8566	0.85657723	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		76.687	66.051	2;3	1.5814E-39	35168	160513_QHF_FH_JSI11Kac_5	197.06	176.19			0.53138	0.52333	5.0078	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53138	0.52333	5.0078	2	0	Median	NaN	NaN	NaN	0	0	Median	14949000	10792000	4156500	0	0	0	0	0	0	14949000	10792000	4156500	0	0	0	40254	1786	37876	247036;247037	331293;331294;331295;331296	331294	1798		4	
NYIQSLTQMPK	1	Unmodified	1321.67	0.67002202	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		61.057	60.585	2	3.3003E-06	54813	160511_QHF_FH_JSI10i_1	110.14	90.865			0.33742	0.33519	180.33	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33742	0.33519	180.33	2	1	Median	NaN	NaN	NaN	0	0	Median	97914000	44359000	53555000	0	0	0	0	0	0	97914000	44359000	53555000	0	0	0	40255	2736	37877	247038;247039;247040	331297;331298;331299	331298			2	
NYISAWELQR	0	Unmodified	1278.6357	0.63568542	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		62.585	61.899	2	0.017357	54832	160511_QHF_FH_JSI10i_2	66.299	42.343			1.1068	1.2378	11.287	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0808	1.3407	NaN	1	0	Median	1.1334	1.1429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	190040000	79140000	110900000	0	0	0	67065000	32378000	34687000	122970000	46763000	76210000	0	0	0	40256	4458	37878	247041;247042	331300;331301	331301			0	
NYISQYSEIAIQMMMHMQPK	1	Unmodified	2442.1204	0.12041455	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	6.24		3							8	2	3	3	3	97.712	91.565	3;4	9.6845E-105	49460	160513_QHF_FH_JSI9Kac_6	237.21	225.58			0.9319	1.0538	27.038	11	0	Median	1.3406	1.131	10.833	2	0	Median	0.89784	1.0538	10.312	3	0	Plateau	1.1957	1.1251	23.64	3	0	Median	0.61181	0.63812	22.916	3	0	Median	5610400000	2958200000	2652200000	987530000	467760000	519770000	1519100000	758630000	760500000	1907800000	1040900000	866900000	1195900000	690920000	505020000	40257	873	37879	247043;247044;247045;247046;247047;247048;247049;247050;247051;247052;247053	331302;331303;331304;331305;331306;331307;331308;331309;331310;331311;331312;331313;331314;331315;331316	331309			14	
NYISQYSEIAIQMMMHMQPK	1	Oxidation (M)	2458.1153	0.11532917	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	1	2	5	91.682	82.753	3	2.1903E-71	44414	160513_QHF_FH_JSI12Kac_6	208.86	195.26			1.2294	1.1026	44.847	10	6	Median	0.79176	0.66649	59.091	2	1	Median	1.2646	1.5154	NaN	1	0	Median	1.282	1.2342	3.8417	2	1	Median	0.89277	0.93888	46.397	5	4	Median	1015100000	524670000	490420000	273660000	144000000	129650000	154120000	77009000	77115000	142430000	66945000	75481000	444880000	236710000	208170000	40258	873	37879	247054;247055;247056;247057;247058;247059;247060;247061;247062;247063	331317;331318;331319;331320;331321;331322;331323;331324;331325;331326;331327;331328;331329	331324		418;419;420;421	13	
NYISQYSEIAIQMMMHMQPK	1	2 Oxidation (M)	2474.1102	0.11024379	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	2	0				By MS/MS	16	0									2				2	87.198	77.755	3	4.4107E-05	40859	160513_QHF_FH_JSI12Kac_6	110.6	96.873			0.96675	1.0146	16.689	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96675	1.0146	16.689	2	1	Median	96168000	49868000	46300000	0	0	0	0	0	0	0	0	0	96168000	49868000	46300000	40259	873	37879	247064;247065	331330;331331	331330		418;419;420;421	1	
NYITMDELRR	0	Unmodified	1309.6449	0.6448699	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	46.497	45.512	3	0.012218	39820	160511_QHF_FH_JSI9i_2	37.18	22.734			0.68969	0.68993	49.949	3	2	Median	0.44179	0.38357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68969	0.68993	NaN	1	1	Median	0.93669	1.0359	NaN	1	1	Median	435680000	251470000	184220000	97836000	62192000	35644000	0	0	0	237420000	122850000	114570000	100430000	66423000	34008000	40260	1021	37880	247066;247067;247068;247069	331332;331333;331334;331335	331333			4	
NYIVEDGDIIFFK	1	Unmodified	1571.7872	0.78716026	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	93.709	93.317	2	9.8102E-13	82010	160511_QHF_FH_JSI9i_2	126.67	100.73			0.9071	0.91369	9.6469	8	0	Median	1.1166	0.9388	13.759	2	0	Median	0.7178	0.8575	8.2231	2	0	Median	0.98522	0.97886	12.255	2	0	Median	0.87438	0.95997	6.2337	2	0	Median	497560000	257390000	240170000	73614000	32674000	40940000	145190000	80224000	64962000	149460000	75366000	74092000	129300000	69127000	60177000	40261	4992	37881	247070;247071;247072;247073;247074;247075;247076;247077;247078	331336;331337;331338;331339;331340;331341;331342;331343;331344;331345;331346;331347;331348;331349;331350;331351;331352;331353;331354;331355;331356;331357	331351			22	
NYKGNSIK	2	Acetyl (K)	964.49779	0.49779495	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	22.187	14.618	2	0.042397	9392	160513_QHF_FH_JSI12Kac_4	50.607	16.81			1.051	1.1442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.051	1.1442	NaN	1	0	Median	9224000	5331800	3892200	0	0	0	0	0	0	0	0	0	9224000	5331800	3892200	40262	2349	37882	247079	331358	331358			1	
NYKGYEK	2	Acetyl (K)	942.4447	0.44469675	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		24.499	16.763	2	0.03396	10925	160513_QHF_FH_JSI11Kac_4	74.127	27.06			0.28664	0.28005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28664	0.28005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9438500	6919400	2519100	0	0	0	0	0	0	9438500	6919400	2519100	0	0	0	40263	2579	37883	247080	331359	331359			1	
NYKPVVQTTGNAR	1	Unmodified	1446.7579	0.75792582	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			19.055	17.89	3	0.023759	14729	160511_QHF_FH_JSI10i_3	40.552	24.08			1.1083	1.0569	133.04	2	2	Median	3.3363	2.7077	NaN	1	1	Median	0.36816	0.41258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45176000	16877000	28299000	23784000	1912400	21872000	21392000	14965000	6426900	0	0	0	0	0	0	40264	3122	37884	247081;247082	331360;331361	331360			2	
NYLAPDATAADK	1	Unmodified	1248.5986	0.59863121	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	33.432	33.19	2	0.0046049	30073	160511_QHF_FH_JSI12i_1	55.721	32.981			0.60155	0.56352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60155	0.56352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50618000	34112000	16506000	0	0	0	0	0	0	50618000	34112000	16506000	0	0	0	40265	5294	37885	247083;247084	331362;331363	331363			2	
NYLDWLTSIPWGK	1	Unmodified	1591.8035	0.80347903	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.92		5	1						6	2	2	4	4	100	96.037	2	9.7802E-25	53059	160513_QHF_FH_JSI10Kac_6	163.12	126.59			0.85211	0.86133	19.713	11	6	Median	0.83936	0.72125	20.312	2	0	Median	0.85359	1.028	6.1446	2	0	Median	0.62533	0.58964	19.728	3	3	Plateau	0.9138	0.94225	9.6483	4	3	Median	1831800000	945540000	886260000	398030000	196270000	201760000	341340000	169550000	171790000	500030000	270250000	229780000	592400000	309470000	282930000	40266	1459	37886	247085;247086;247087;247088;247089;247090;247091;247092;247093;247094;247095;247096	331364;331365;331366;331367;331368;331369;331370;331371;331372;331373;331374;331375;331376	331376			13	
NYLEGIYNVPVAAVR	0	Unmodified	1676.8886	0.88860564	2737	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	84.186	83.533	2	3.0652E-21	72203	160511_QHF_FH_JSI12i_2	172.17	148.14			0.83764	0.8973	17.572	6	4	Median	1.0881	0.96006	NaN	1	1	Median	0.8364	1.0202	26.887	2	2	Median	0.82913	0.81308	16.384	2	1	Median	0.76549	0.88191	NaN	1	0	Median	222050000	121540000	100510000	27718000	13875000	13843000	68752000	39280000	29472000	71229000	41749000	29480000	54348000	26636000	27711000	40267	2737	37887	247097;247098;247099;247100;247101;247102	331377;331378;331379;331380;331381;331382;331383;331384;331385	331379			9	
NYLEPGK	1	Unmodified	819.41267	0.41266834	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	21.298	20.65	2	0.02357	18145	160511_QHF_FH_JSI12i_1	55.504	38.577			1.029	0.82198	20.165	6	0	Linear	1.2938	1.0879	9.7434	2	0	Median	0.96176	1.1519	28.618	2	0	Median	0.92848	0.89921	NaN	1	0	Median	0.75288	0.80145	NaN	1	0	Median	1280700000	643500000	637210000	358110000	154660000	203450000	309120000	170350000	138770000	277890000	124440000	153440000	335600000	194050000	141550000	40268	1103	37888	247103;247104;247105;247106;247107;247108	331386	331386			1	
NYLETGR	0	Unmodified	851.41373	0.41373097	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	18.194	17.248	2	0.039053	14464	160511_QHF_FH_JSI9i_2	47.849	24.829			1.0776	1.0439	21.233	2	1	Median	1.4399	1.213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80643	0.89838	NaN	1	1	Median	63223000	32614000	30609000	35471000	14079000	21392000	0	0	0	0	0	0	27752000	18535000	9216900	40269	3691	37889	247109;247110	331387;331388	331388			2	
NYLHYSLYDQAEK	1	Unmodified	1642.7627	0.76273643	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.2		9							1	3	2	3	2	49.994	49.062	2;3	4.9208E-06	42129	160511_QHF_FH_JSI11i_2	125.28	74.192			0.91394	0.93445	41.313	9	4	Median	1.1437	1.0063	58.154	2	2	Median	0.62433	0.74916	31.256	2	0	Median	0.91394	0.92949	61.308	3	2	Median	0.9888	1.0838	0.88185	2	0	Median	1071700000	607750000	463950000	45866000	19917000	25949000	311710000	204930000	106780000	430970000	234820000	196160000	283150000	148090000	135060000	40270	313	37890	247111;247112;247113;247114;247115;247116;247117;247118;247119;247120	331389;331390;331391;331392;331393;331394;331395;331396;331397;331398;331399;331400;331401;331402;331403;331404	331397			16	
NYLLPAGYSLEEQR	0	Unmodified	1651.8206	0.82058566	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	71.85	70.898	2	3.1627E-05	63057	160511_QHF_FH_JSI10i_2	80.834	64.202			1.1904	1.2408	14.268	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3796	1.3725	NaN	1	1	Median	1.0273	1.1217	NaN	1	1	Median	50562000	20010000	30553000	0	0	0	0	0	0	32458000	11075000	21383000	18104000	8934600	9169600	40271	2320	37891	247121;247122;247123	331405;331406;331407	331407			3	
NYLLQCTR	0	Unmodified	1066.523	0.52296385	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	7		2							2	1		2	1	38.561	33.43	2	0.0031596	28478	160511_QHF_FH_JSI11i_2	73.665	54.028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40272	4212	37892	247124;247125;247126;247127	331408;331409;331410;331411	331410			4	
NYLLSLPHK	1	Unmodified	1083.6077	0.60767975	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.63		7							1	1	2	2	3	54.979	52.905	2;3	0.00059959	45657	160511_QHF_FH_JSI11i_2	87.476	79.908			0.90527	0.9865	10.321	8	1	Median	1.0646	0.89444	NaN	1	0	Median	0.74572	0.90267	22.875	2	1	Median	0.97	0.9865	1.8109	2	0	Median	0.90516	1.0243	4.1206	3	0	Plateau	649000000	323520000	325480000	73078000	39515000	33563000	146340000	69074000	77269000	270930000	126560000	144370000	158650000	88368000	70280000	40273	1309	37893	247128;247129;247130;247131;247132;247133;247134;247135	331412;331413;331414;331415;331416;331417;331418;331419;331420;331421;331422;331423;331424;331425;331426;331427;331428;331429;331430	331425			19	
NYLPAINGIVFLVDCADHSR	0	Unmodified	2273.1263	0.12628651	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	96.749	87.325	3	1.4333E-06	47673	160513_QHF_FH_JSI12Kac_6	82.8	82.797			1.359	1.368	40.064	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0904	1.0305	NaN	1	0	Median	1.6937	1.8161	NaN	1	0	Median	311770000	147550000	164220000	0	0	0	0	0	0	223160000	107240000	115920000	88615000	40309000	48305000	40274	4941	37894	247136;247137	331431	331431			1	
NYLPLLEPVKPEPK	2	Unmodified	1635.9236	0.92359416	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	74.04	72.764	3	0.050529	62969	160511_QHF_FH_JSI12i_2	32.275	25.394			0.8688	0.98983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8688	0.98983	NaN	1	1	Median	52972000	29072000	23900000	0	0	0	0	0	0	0	0	0	52972000	29072000	23900000	40275	5220	37895	247138	331432	331432			1	
NYLSIFR	0	Unmodified	911.4865	0.48650199	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	66.273	65.377	2	0.01116	56934	160511_QHF_FH_JSI11i_2	71.715	48.678			0.82183	0.83837	31.249	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2468	1.5249	NaN	1	1	Median	0.82183	0.83837	NaN	1	0	Median	0.90597	0.9667	NaN	1	0	Median	141770000	75675000	66097000	0	0	0	38874000	19063000	19812000	62099000	33679000	28420000	40799000	22933000	17866000	40276	871	37896	247139;247140;247141;247142	331433;331434;331435;331436;331437;331438	331436			6	
NYLSLAPLFFK	1	Unmodified	1311.7227	0.72270951	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.6	6.86		3							2	1	2	2		99.76	98.266	2	6.4498E-05	90268	160511_QHF_FH_JSI10i_2	93.098	82.867			0.70338	0.78078	49.611	4	2	Median	1.1572	0.98508	NaN	1	1	Median	0.44798	0.54779	71.325	2	1	Median	0.67773	0.67206	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	508940000	293360000	215580000	89691000	42040000	47651000	208670000	120320000	88349000	210580000	131000000	79582000	0	0	0	40277	179	37897	247143;247144;247145;247146;247147	331439;331440;331441;331442;331443	331442			5	
NYLSPTFK	1	Unmodified	968.49673	0.49673232	5135;5134	Q9NYU2;Q9NYU1	UGGT1;UGGT2	UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.647	44.671	2	0.0055661	38296	160511_QHF_FH_JSI11i_2	65.246	34.743			1.2901	1.3344	33.6	4	2	Median	1.1693	1.0252	NaN	1	0	Median	1.4233	1.737	NaN	1	1	Median	0.93902	0.9394	NaN	1	0	Median	1.5734	1.7636	NaN	1	1	Median	587290000	275980000	311310000	99058000	42896000	56162000	127750000	70729000	57024000	243270000	107880000	135390000	117210000	54471000	62742000	40278	5135;5134	37898	247148;247149;247150;247151	331444;331445;331446;331447;331448;331449	331447			6	
NYLSQPR	0	Unmodified	876.44537	0.44536545	1189	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	18.191	17.401	2	0.027308	14215	160511_QHF_FH_JSI12i_2	56.122	43.133			0.49053	0.53477	66.855	5	4	Median	0.80973	0.70465	NaN	1	1	Median	0.14774	0.17979	NaN	1	1	Median	0.46946	0.47777	NaN	1	0	Median	0.70595	0.76676	50.961	2	2	Median	216320000	131530000	84794000	24390000	13387000	11002000	36027000	29364000	6663100	85081000	50342000	34739000	70824000	38434000	32390000	40279	1189	37899	247152;247153;247154;247155;247156	331450;331451;331452;331453;331454	331450			5	
NYLTNLLK	1	Unmodified	977.55458	0.55458155	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		68.165	67.577	2	0.014767	59047	160511_QHF_FH_JSI11i_2	60.508	34.771			0.95844	0.9616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95844	0.9616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131260000	46256000	85001000	0	0	0	0	0	0	131260000	46256000	85001000	0	0	0	40280	2453	37900	247157	331455	331455			1	
NYLWREENAEQQALAAK	1	Unmodified	2032.9967	0.99665254	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	55.384	55.142	3	6.8167E-05	48839	160511_QHF_FH_JSI11i_3	72.797	63.267			1.5341	1.5899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5341	1.5899	NaN	1	1	Median	39487000	13482000	26005000	0	0	0	0	0	0	0	0	0	39487000	13482000	26005000	40281	5479	37901	247158;247159	331456;331457	331456			2	
NYMAFLDSQTATFSR	0	Unmodified	1750.7985	0.79847001	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.441	84.751	2	1.6093E-06	74487	160511_QHF_FH_JSI11i_2	147.87	131.61			0.81427	0.94235	38.368	4	4	Median	0.56446	0.48391	NaN	1	1	Median	0.76264	0.93695	NaN	1	1	Median	1.1628	1.1721	NaN	1	1	Median	0.8694	0.94779	NaN	1	1	Median	151680000	69462000	82222000	20309000	15649000	4659600	33565000	17761000	15805000	59564000	19238000	40326000	38245000	16813000	21432000	40282	648	37902	247160;247161;247162;247163	331458;331459;331460;331461	331460			4	
NYMQRPSTEQLLK	1	Unmodified	1606.8137	0.81372614	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		44.61	43.88	3	0.032291	38656	160511_QHF_FH_JSI10i_2	32.275	25.547			0.54807	0.60581	119.7	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1557	1.4123	NaN	1	0	Median	0.25991	0.25987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111340000	61234000	50104000	0	0	0	44801000	19637000	25164000	66537000	41597000	24940000	0	0	0	40283	733	37903	247164;247165	331462	331462			1	
NYMSNPSYNYEIVNR	0	Unmodified	1862.8257	0.82574739	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.86	6.83	6	4					1	9	2	7	5	4	6	60.977	55.139	2;3	3.0577E-52	50276	160511_QHF_FH_JSI11i_1	222.49	218.48			1.0647	1.0662	19.724	21	6	Median	1.4167	1.1959	26.603	7	4	Median	0.89243	1.0468	11.365	5	2	Median	1.2717	1.248	11.771	4	0	Linear	0.95202	1.0417	20.276	5	0	Median	887690000	439740000	447950000	233750000	108710000	125040000	222380000	122900000	99478000	246520000	116010000	130510000	185040000	92117000	92921000	40284	2517	37904	247166;247167;247168;247169;247170;247171;247172;247173;247174;247175;247176;247177;247178;247179;247180;247181;247182;247183;247184;247185;247186;247187	331463;331464;331465;331466;331467;331468;331469;331470;331471;331472;331473;331474;331475;331476;331477;331478;331479;331480;331481;331482;331483;331484;331485;331486;331487;331488;331489;331490;331491;331492;331493	331463			31	
NYMSNPSYNYEIVNR	0	Oxidation (M)	1878.8207	0.82066201	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.618						1	5	9		2	5	3	5	56.175	45.612	2;3	8.3473E-33	23374	160513_QHF_FH_JSI12Kac_5	169.23	166.71			0.96016	1.0433	14.06	14	1	Median	1.4148	1.1735	2.1097	2	0	Median	0.67442	0.78832	19.847	4	1	Linear	0.96137	0.94233	18.248	3	0	Median	0.95896	1.0459	8.9392	5	0	Median	108010000	50874000	57137000	14598000	6044700	8553000	32002000	15293000	16709000	25027000	11591000	13436000	36383000	17944000	18439000	40285	2517	37904	247188;247189;247190;247191;247192;247193;247194;247195;247196;247197;247198;247199;247200;247201;247202	331494;331495;331496;331497;331498;331499;331500;331501;331502;331503;331504;331505;331506;331507;331508;331509;331510;331511;331512;331513;331514	331510		1992	21	
NYNFGGEFVEAMIR	0	Unmodified	1645.7559	0.75587691	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								1	2	3	3	97.741	97.536	2;3	2.4276E-07	83879	160511_QHF_FH_JSI12i_2	93.345	79.187			1.1933	1.2879	30.592	8	7	Median	1.4639	1.282	NaN	1	1	Median	0.90479	1.1051	36.533	2	1	Median	1.0732	1.0525	32.226	3	3	Median	1.5798	1.6728	36.335	2	2	Median	162730000	72849000	89882000	15295000	6716100	8578800	35995000	19093000	16902000	81969000	34259000	47710000	29472000	12782000	16691000	40286	2284	37905	247203;247204;247205;247206;247207;247208;247209;247210;247211	331515;331516;331517;331518;331519;331520;331521;331522;331523	331517			9	
NYNLEQTLDDHSSSITAIK	1	Unmodified	2148.0335	0.033491558	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		67.667	67.092	3	0.012159	58652	160511_QHF_FH_JSI11i_2	33.405	25.183			1.0118	1.0775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0118	1.0775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38830000	12769000	26061000	0	0	0	0	0	0	38830000	12769000	26061000	0	0	0	40287	325	37906	247212;247213	331524;331525	331525			2	
NYPATFWVNPQFK	1	Unmodified	1610.7882	0.78816332	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	3	2	1	1	82.388	73.385	2	2.5282E-16	40433	160513_QHF_FH_JSI11Kac_6	136.02	114.63			1.4506	1.3481	53.602	4	2	Median	0.99893	0.86561	15.982	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9126	1.8752	NaN	1	0	Median	2.2353	2.405	NaN	1	0	Median	107820000	49829000	57989000	61857000	31890000	29967000	0	0	0	19686000	8584600	11101000	26275000	9354400	16921000	40288	871	37907	247214;247215;247216;247217;247218;247219;247220	331526;331527;331528;331529;331530;331531;331532	331527			7	
NYPATVHGALLSGLR	0	Unmodified	1567.8471	0.84707518	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.958	57.624	2	0.012884	49476	160511_QHF_FH_JSI12i_2	54.7	44.746			0.60368	0.63422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60368	0.63422	NaN	1	1	Median	13875000	9259900	4615100	0	0	0	0	0	0	0	0	0	13875000	9259900	4615100	40289	412	37908	247221	331533	331533			1	
NYPDPVSIIQK	1	Unmodified	1272.6714	0.67140222	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.768	66.167	2	0.00010541	60329	160511_QHF_FH_JSI11i_1	96.89	86.366			0.88641	0.90184	6.1674	4	1	Median	1.1427	0.95602	NaN	1	0	Median	0.7072	0.8236	NaN	1	0	Median	0.93272	0.90559	NaN	1	0	Median	0.8424	0.89811	NaN	1	1	Median	1267400000	682700000	584700000	342470000	153470000	189000000	240580000	139750000	100830000	338250000	188210000	150040000	346090000	201260000	144830000	40290	1520	37909	247222;247223;247224;247225	331534;331535;331536;331537;331538;331539;331540;331541;331542	331535			9	
NYPEGHK	1	Unmodified	843.38752	0.38751622	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	4.9659	4.5743	2	0.013281	2487	160511_QHF_FH_JSI11i_2	70.912	35.807			0.80107	0.92992	11.994	4	1	Median	1.1529	0.98741	NaN	1	0	Median	0.80086	0.96904	NaN	1	0	Median	0.74907	0.75892	NaN	1	1	Median	0.80127	0.89238	NaN	1	0	Median	352840000	194530000	158310000	66057000	26774000	39282000	57417000	31599000	25818000	141570000	85109000	56464000	87789000	51044000	36745000	40291	1158	37910	247226;247227;247228;247229	331543;331544;331545;331546	331544			4	
NYPNTFWMNPQYLIK	1	Oxidation (M)	1943.924	0.92400487	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		2										1	1	88.972	88.019	2	0.015353	77393	160511_QHF_FH_JSI11i_2	51.927	37.769			0.71294	0.74897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71294	0.74897	NaN	1	1	Median	13905000	8312900	5592300	0	0	0	0	0	0	0	0	0	13905000	8312900	5592300	40292	1122	37911	247230;247231	331547;331548	331548		749	2	
NYPNTFWMNPQYLIK	1	Unmodified	1927.9291	0.92909025	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	7.13	1	3							4	2	2	2	2	95.838	91.182	2	2.3474E-62	45680	160513_QHF_FH_JSI11Kac_6	206.1	192.35			1.1296	1.1441	48.359	8	7	Median	1.3196	1.1441	30.887	2	2	Median	1.8794	2.2869	59.886	2	2	Median	1.1295	1.114	40.048	2	1	Median	0.81847	0.87819	5.0154	2	2	Median	1022000000	473440000	548510000	211040000	90948000	120090000	405800000	197810000	207990000	348550000	151760000	196790000	56560000	32921000	23638000	40293	1122	37911	247232;247233;247234;247235;247236;247237;247238;247239	331549;331550;331551;331552;331553;331554;331555;331556;331557	331549			9	
NYQFDFLRPQHSLFNYFTK	1	Unmodified	2464.1964	0.19641498	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	1	3	3	3	88.368	80.155	2;3;4	1.2684E-70	45958	160513_QHF_FH_JSI10Kac_6	172.84	141.88			0.95787	1.0275	21.621	10	5	Median	1.2048	1.0227	NaN	1	0	Median	0.90207	1.0698	21.274	3	0	Median	0.89149	0.84315	11.223	3	3	Median	1.0854	1.1342	13.5	3	2	Median	6539900000	3148200000	3391700000	706110000	357470000	348640000	3989300000	1853300000	2136000000	761950000	440880000	321070000	1082500000	496560000	585930000	40294	2676	37912	247240;247241;247242;247243;247244;247245;247246;247247;247248;247249	331558;331559;331560;331561;331562;331563;331564;331565;331566;331567;331568;331569;331570;331571	331568			14	
NYQFFIGENMNPDGMVALLDYREDGVTPYMIFFK	1	Unmodified	4033.8729	0.87290386	1036	P13693	TPT1	Translationally-controlled tumor protein	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			99.023	93.302	3;4	1.3158E-170	54724	160513_QHF_FH_JSI10Kac_6	266.62	255.64			0.80026	0.9522	2.1056	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80026	0.9522	2.1056	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	536050000	299090000	236960000	0	0	0	536050000	299090000	236960000	0	0	0	0	0	0	40295	1036	37913	247250;247251	331572;331573	331572			2	
NYQQNYQNSESGEK	1	Unmodified	1687.7074	0.70740639	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.87	4	1				4				1	3	3	2	15.502	11.999	2	5.2201E-52	10269	160511_QHF_FH_JSI9i_1	218.62	212.09			1.077	1.1357	59.698	9	2	Median	1.2732	1.0434	NaN	1	0	Median	1.0263	1.2117	26.699	3	1	Median	0.89041	0.86519	103.43	3	1	Plateau	0.91437	0.97542	24.13	2	0	Median	3040300000	1545700000	1494600000	594090000	276590000	317500000	942160000	522100000	420060000	691320000	340450000	350870000	812720000	406600000	406120000	40296	2066	37914	247252;247253;247254;247255;247256;247257;247258;247259;247260	331574;331575;331576;331577;331578;331579;331580;331581;331582;331583;331584;331585;331586;331587;331588;331589;331590;331591;331592;331593	331588			20	
NYQSQADIPIR	0	Unmodified	1303.6521	0.65206377	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	39.485	38.988	2	0.0032524	34934	160511_QHF_FH_JSI10i_1	69.276	48.277			0.93531	1.0482	5.8859	2	2	Median	NaN	NaN	NaN	0	0	Median	0.89806	1.0927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9741	1.0055	NaN	1	1	Median	117960000	74941000	43019000	0	0	0	66321000	45931000	20390000	0	0	0	51639000	29010000	22629000	40297	2584	37915	247261;247262;247263	331594;331595;331596	331595			3	
NYQVQFVTLK	1	Unmodified	1238.6659	0.66592292	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.639							1	4	2	2	3	1	1	73.853	64.002	2	0.00010452	34133	160513_QHF_FH_JSI9Kac_6	100.02	79.392			1.0327	1.1364	26.714	7	1	Median	1.5537	1.3283	47.809	2	0	Median	0.99023	1.1364	21.332	3	1	Median	1.0327	1.0093	NaN	1	0	Median	1.1358	1.2767	NaN	1	0	Median	55813000	29566000	26246000	18879000	8824100	10055000	20260000	11047000	9213200	11737000	7163000	4573800	4936900	2532200	2404700	40298	5376	37916	247264;247265;247266;247267;247268;247269;247270	331597;331598;331599;331600;331601;331602;331603	331602			7	
NYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK	1	Unmodified	4537.2318	0.2318053	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.32	100.6	4	9.1102E-40	59629	160513_QHF_FH_JSI10Kac_6	119.95	113.45			1.3881	1.675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3881	1.675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	285510000	143170000	142340000	0	0	0	285510000	143170000	142340000	0	0	0	0	0	0	40299	3343	37917	247271	331604	331604			1	
NYSVNLENLK	1	Unmodified	1192.6088	0.60880197	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			55.552	54.643	2	0.0013026	48283	160511_QHF_FH_JSI10i_2	71.349	51.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40300	4794	37918	247272	331605	331605			1	
NYTDEAIETDDLTIK	1	Unmodified	1739.8101	0.81014013	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	62.972	62.338	2	5.7392E-40	56633	160511_QHF_FH_JSI11i_1	220.9	204.64			1.0894	1.0368	13.1	4	0	Median	1.0807	0.86002	NaN	1	0	Median	0.85851	1.0078	NaN	1	0	Median	1.0981	1.0666	NaN	1	0	Median	1.1055	1.176	NaN	1	0	Median	3731400000	1837600000	1893900000	969350000	493460000	475880000	981350000	532920000	448430000	862640000	411120000	451520000	918070000	400050000	518030000	40301	209	37919	247273;247274;247275;247276;247277	331606;331607;331608;331609;331610;331611;331612;331613;331614;331615;331616;331617;331618;331619;331620;331621;331622;331623;331624;331625	331609			20	
NYTDNELEK	1	Unmodified	1124.4986	0.49858282	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	21.117	20.494	2	9.0998E-06	17545	160511_QHF_FH_JSI11i_1	111.95	94.562			0.95203	1.0094	76.17	6	4	Median	0.99486	0.81666	111.93	2	2	Median	0.95134	1.1128	NaN	1	0	Median	0.95272	0.91555	NaN	1	0	Median	1.0083	1.0607	124.58	2	2	Median	1956000000	947820000	1008200000	597970000	300200000	297770000	387860000	193930000	193940000	330880000	154530000	176350000	639280000	299160000	340120000	40302	762	37920	247278;247279;247280;247281;247282;247283	331626;331627;331628;331629;331630;331631;331632;331633;331634	331627			9	
NYTEEEDRFLICMLHK	1	Unmodified	2096.9659	0.96594604	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	79.26	79.175	3;4	6.1951E-05	70581	160511_QHF_FH_JSI11i_3	81.311	77.343			1.2624	1.2252	28.43	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1513	1.1075	14.287	2	0	Median	1.6612	1.7548	NaN	1	0	Median	121780000	50526000	71258000	0	0	0	0	0	0	100250000	40250000	60003000	21531000	10276000	11255000	40303	403	37921	247284;247285;247286	331635;331636;331637;331638	331635			4	
NYTFWQWFDGVMEVLKK	2	Unmodified	2190.0608	0.060832703	1750	P51692	STAT5B	Signal transducer and activator of transcription 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	100.09	91.987	3	2.5195E-24	52499	160513_QHF_FH_JSI9Kac_6	156.22	137.46			1.2454	1.3451	43.802	3	0	Median	2.3578	2.0025	NaN	1	0	Median	0.71242	0.83488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2454	1.3451	NaN	1	0	Median	412960000	191420000	221550000	159020000	49483000	109540000	238090000	136470000	101620000	0	0	0	15849000	5467600	10381000	40304	1750	37922	247287;247288;247289	331639;331640;331641;331642	331639			4	
NYTLVTVFGNLHQAQLGGVPGTYQLVR	0	Unmodified	2944.5559	0.55592554	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	91.455	83.344	2;3;4	3.65E-254	46241	160513_QHF_FH_JSI9Kac_6	320.62	287			0.83692	0.88149	26.699	10	3	Median	1.1135	0.93827	20.997	3	0	Plateau	0.87499	1.0294	9.2487	3	1	Median	0.8322	0.79136	8.3396	2	0	Median	0.52112	0.54616	22.397	2	2	Median	4442500000	2402600000	2040000000	1229000000	665950000	563020000	1338100000	639610000	698530000	987840000	358090000	629750000	887600000	738930000	148670000	40305	3503	37923	247290;247291;247292;247293;247294;247295;247296;247297;247298;247299	331643;331644;331645;331646;331647;331648;331649;331650;331651;331652;331653;331654;331655;331656;331657	331650			15	
NYTSVYDK	1	Unmodified	988.45018	0.45017606	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	22.22	21.624	2	0.0055661	18543	160511_QHF_FH_JSI11i_1	65.246	53.525			0.98072	0.87378	27.424	5	1	Median	1.046	0.87378	NaN	1	0	Median	0.84884	1.0037	46.849	2	1	Median	0.98072	0.95869	NaN	1	0	Median	0.66934	0.71525	NaN	1	0	Median	1388600000	785650000	602920000	333850000	168900000	164950000	354980000	217260000	137720000	344380000	207410000	136970000	355370000	192080000	163280000	40306	5536	37924	247300;247301;247302;247303;247304	331658;331659;331660;331661;331662;331663;331664	331658			7	
NYVHFAATQVQNR	0	Unmodified	1546.7641	0.76407383	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			44.588	35.976	2;3	0.0058748	19900	160513_QHF_FH_JSI10Kac_6	60.434	42.998			0.27763	0.32835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27763	0.32835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67174000	58242000	8932300	0	0	0	67174000	58242000	8932300	0	0	0	0	0	0	40307	5461	37925	247305;247306	331665;331666	331666			2	
NYVNGKTFLEK	2	Acetyl (K)	1353.6929	0.69286595	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.497							5	4		1	3	3	2	66.355	55.579	2	5.9062E-09	29118	160513_QHF_FH_JSI9Kac_5	120.06	103.39			1.47	1.5855	92.04	6	3	Median	1.2072	1.021	NaN	1	0	Median	1.1004	1.3101	68.325	2	1	Median	9.6076	9.1641	NaN	1	1	Median	1.8966	2.0838	79.988	2	1	Median	60380000	23923000	36456000	7981300	3822200	4159100	19255000	7688800	11567000	10157000	508870	9647700	22986000	11903000	11083000	40308	1265	37926	247307;247308;247309;247310;247311;247312;247313;247314;247315	331667;331668;331669;331670;331671;331672;331673;331674;331675;331676	331667	1162		10	
NYVPEDEDLK	1	Unmodified	1220.5561	0.55609769	3759	Q8WUD4	CCDC12	Coiled-coil domain-containing protein 12	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.456	37.851	2	0.014736	34317	160511_QHF_FH_JSI12i_1	52.278	41.114			0.84864	0.86952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84864	0.86952	NaN	1	1	Median	33718000	18864000	14854000	0	0	0	0	0	0	0	0	0	33718000	18864000	14854000	40309	3759	37927	247316	331677	331677			1	
NYVTPVNR	0	Unmodified	961.49813	0.49812931	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	21.615	20.439	2	0.0030213	16871	160511_QHF_FH_JSI12i_2	75.692	60.827			1.0346	1.1456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.1456	NaN	1	0	Median	77753000	46729000	31024000	0	0	0	0	0	0	0	0	0	77753000	46729000	31024000	40310	2043	37928	247317;247318	331678;331679;331680	331679			3	
NYYEQWGK	1	Unmodified	1086.4771	0.47705951	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.49	6	6	4				4	7	2	8	9	5	7	39.879	35.445	2	0.00024028	31920	160511_QHF_FH_JSI10i_1	117.17	99.783			0.93163	0.9263	34.791	23	7	Median	1.1187	0.91949	27.366	8	3	Median	0.83927	0.98801	43.734	7	3	Median	0.85932	0.86134	15.652	3	0	Plateau	0.82369	0.87955	34.104	5	1	Median	4714000000	2163800000	2550200000	876830000	378870000	497960000	1143900000	540980000	602960000	1544700000	655460000	889290000	1148500000	588510000	559940000	40311	1212	37929	247319;247320;247321;247322;247323;247324;247325;247326;247327;247328;247329;247330;247331;247332;247333;247334;247335;247336;247337;247338;247339;247340;247341;247342;247343;247344;247345;247346;247347	331681;331682;331683;331684;331685;331686;331687;331688;331689;331690;331691;331692;331693;331694;331695;331696;331697;331698;331699;331700;331701;331702;331703;331704;331705;331706;331707;331708;331709;331710;331711;331712;331713;331714;331715;331716;331717;331718;331719;331720;331721;331722;331723;331724;331725;331726;331727;331728;331729;331730;331731	331699			51	
NYYKRIEPADAHVLQK	2	Acetyl (K)	1986.0323	0.032309767	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			56.203	47.692	3	0.026965	26241	160513_QHF_FH_JSI10Kac_6	51.147	45.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10113000	10113000	0	0	0	0	10113000	10113000	0	0	0	0	0	0	0	40312	4614	37930	247348	331732	331732	3199		1	
NYYQDTPK	1	Unmodified	1027.4611	0.4610751	5578	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			15.968	15.724	2	0.0030375	13240	160511_QHF_FH_JSI10i_1	82.241	67.376			1.3753	1.5955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3753	1.5955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86758000	37936000	48823000	0	0	0	86758000	37936000	48823000	0	0	0	0	0	0	40313	5578	37931	247349;247350	331733;331734	331733			2	
PAEDKIFPVPEEPPVKK	3	Unmodified	1919.0404	0.040414837	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	103.13	103.05	3	0.034081	90800	160511_QHF_FH_JSI11i_2	27.208	16.549			0.91917	1.0058	12.859	5	0	Median	1.2289	1.0624	NaN	1	0	Median	0.79397	0.97565	NaN	1	0	Median	0.89566	0.9014	NaN	1	0	Median	1.069	1.1305	16.526	2	0	Median	396510000	197900000	198610000	56154000	20756000	35397000	66259000	38621000	27638000	142800000	76687000	66109000	131300000	61834000	69466000	40314	752	37932	247351;247352;247353;247354;247355	331735	331735			1	
PAIEYALR	0	Unmodified	931.51272	0.51271674	1115	P17342	NPR3	Atrial natriuretic peptide receptor 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.504	40.133	2	0.01525	34297	160511_QHF_FH_JSI12i_2	49.358	1.5099			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40315	1115	37933	247356	331736	331736			1	
PALDIWPYPSPR	0	Unmodified	1410.7296	0.7295858	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	51.419	50.957	2;3	0.04349	44943	160511_QHF_FH_JSI10i_2	20.204	9.5593			1.0136	1.1474	15.582	9	0	Median	1.3887	1.1978	NaN	1	0	Median	0.95549	1.1611	0	2	0	Median	1.2021	1.1474	17.864	3	0	Median	1.0136	1.0353	13.902	3	0	Plateau	1955300000	927240000	1028100000	121930000	31666000	90266000	522380000	282940000	239440000	727230000	322830000	404400000	583800000	289810000	294000000	40316	2311	37934	247357;247358;247359;247360;247361;247362;247363;247364;247365	331737;331738;331739;331740	331738			4	
PAPFFVLDEVDAALDNTNIGK	1	Unmodified	2245.1267	0.12666366	3631	Q8NDV3	SMC1B	Structural maintenance of chromosomes protein 1B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	102.84	102.73	3	1.6671E-05	91329	160511_QHF_FH_JSI10i_2	71.376	55.064			0.45098	0.51734	2.7352	2	2	Median	NaN	NaN	NaN	0	0	Median	0.42513	0.50743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4784	0.52745	NaN	1	1	Median	123220000	89424000	33800000	0	0	0	63923000	48516000	15407000	0	0	0	59302000	40908000	18394000	40317	3631	37935	247366;247367	331741;331742	331742			2	
PASTMGMGPLGK	1	Unmodified	1145.5573	0.55730044	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				76.9	68.297	2	0.040626	36751	160513_QHF_FH_JSI9Kac_6	49.418	32.032			3.4439	2.9973	NaN	1	1	Median	3.4439	2.9973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	291960000	80462000	211490000	291960000	80462000	211490000	0	0	0	0	0	0	0	0	0	40318	2409	37936	247368	331743	331743			1	
PATAIDVHR	0	Unmodified	978.52468	0.52467841	5815				yes	yes	0	0	0	0			By MS/MS		3	0			1									1		25.828	25.828	3	0.0034611	22108	160511_QHF_FH_JSI11i_3	38.303	27.43	+		4.011	3.704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.011	3.704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43902000	6770400	37132000	0	0	0	0	0	0	43902000	6770400	37132000	0	0	0	40319	5815	37937	247369	331744	331744			1	
PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK	1	Unmodified	3287.7289	0.72892369	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		100.45	100.36	3	0.016167	91024	160511_QHF_FH_JSI11i_1	22.344	16.858			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41396000	18643000	22753000	0	0	0	0	0	0	41396000	18643000	22753000	0	0	0	40320	2325	37938	247370	331745	331745			1	
PDFQLFTGNK	1	Unmodified	1165.5768	0.57677356	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		15.113	14.876	2	0.011934	11908	160511_QHF_FH_JSI11i_2	55.676	18.834			0.2839	0.28552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2839	0.28552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80045000	63451000	16594000	0	0	0	0	0	0	80045000	63451000	16594000	0	0	0	40321	4109	37939	247371	331746	331746			1	
PDIQVQAK	1	Unmodified	897.49198	0.4919813	2936	Q5T160	RARS2	Probable arginine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	8.861	8.9585	3	0.022087	6359	160511_QHF_FH_JSI12i_3	24.923	8.1467			0.16286	0.16491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16286	0.16491	NaN	1	0	Median	165830000	146610000	19225000	0	0	0	0	0	0	0	0	0	165830000	146610000	19225000	40322	2936	37940	247372	331747	331747			1	
PEAENNPGR	0	Unmodified	982.44682	0.44682202	844	P06213	INSR	Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	6.7503	6.3275	3	0.054644	4113	160511_QHF_FH_JSI11i_2	12.236	2.0053			0.98275	1.0579	22.784	4	0	Median	0.8951	0.76354	NaN	1	0	Median	1.0802	1.3252	NaN	1	0	Median	1.0613	1.0839	NaN	1	0	Median	0.91003	1.0326	NaN	1	0	Median	1070700000	530980000	539720000	138160000	81117000	57040000	223270000	96255000	127010000	386740000	171570000	215170000	322540000	182040000	140500000	40323	844	37941	247373;247374;247375;247376	331748	331748			1	
PETEAVVK	1	Unmodified	871.4651	0.46509784	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.441	41.227	2	0.030812	36529	160511_QHF_FH_JSI9i_1	41.502	10.213			0.78592	0.65591	NaN	1	0	Median	0.78592	0.65591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	210190000	93206000	116980000	210190000	93206000	116980000	0	0	0	0	0	0	0	0	0	40324	2162	37942	247377	331749	331749			1	
PFLWLAR	0	Unmodified	901.51741	0.51740818	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.37	77.12	2	0.023186	41034	160513_QHF_FH_JSI12Kac_6	67.377	67.377			1.6884	1.6949	49.384	4	0	Median	2.7326	2.3272	NaN	1	0	Median	1.0432	1.2344	NaN	1	0	Median	2.7548	2.6078	NaN	1	0	Median	0.88364	0.93684	NaN	1	0	Median	4021900000	1508800000	2513100000	1528000000	480520000	1047500000	1337000000	659220000	677740000	841060000	205650000	635410000	315910000	163400000	152520000	40325	2021	37943	247378;247379;247380;247381	331750;331751;331752;331753;331754;331755	331754			6	
PGGVSLSK	1	Unmodified	743.41775	0.41775372	441	O60704	TPST2	Protein-tyrosine sulfotransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	2	3	1							1	1	2	2	5.8346	5.6021	2	0.014896	3767	160511_QHF_FH_JSI11i_1	50.966	10.863			0.75482	0.77463	144.81	6	1	Median	1.0371	0.8933	NaN	1	0	Median	0.54939	0.67173	NaN	1	0	Median	0.20032	0.19942	244.54	2	0	Median	0.3441	0.35915	161.6	2	1	Median	4521700000	2658200000	1863500000	358340000	155930000	202410000	268830000	188720000	80102000	548030000	465020000	83004000	3346500000	1848500000	1498000000	40326	441	37944	247382;247383;247384;247385;247386;247387	331756;331757	331756			2	
PGLRDVAYQYVKKGSR	2	Unmodified	1836.0006	0.0006157076	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	3			By MS/MS		16	0									1			1		107.43	98.019	2	0.049904	55835	160513_QHF_FH_JSI11Kac_6	32.062	16.523			1.0558	1.0428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0558	1.0428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13154000	6496700	6656900	0	0	0	0	0	0	13154000	6496700	6656900	0	0	0	40327	2222	37945	247388	331758	331758			0	
PGSIKPHQK	2	Acetyl (K)	1032.5716	0.5716286	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	14.792	7.6527	3	0.051837	5304	160513_QHF_FH_JSI12Kac_6	32.415	17.154			0.0091572	0.0098264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0091572	0.0098264	NaN	1	1	Median	28813000	28668000	145260	0	0	0	0	0	0	0	0	0	28813000	28668000	145260	40328	1658	37946	247389	331759	331759			1	
PGYKSIEGIK	2	Acetyl (K)	1132.6128	0.61282471	5847				yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.4							4	1			2	2	1	26.292	17.461	2;3	0.0251	10979	160513_QHF_FH_JSI10Kac_4	58.981	15.734	+		0.079403	0.085992	49.8	5	5	Median	NaN	NaN	NaN	0	0	Median	0.12427	0.14186	8.314	2	2	Median	0.053615	0.052763	8.3184	2	2	Median	0.079403	0.085992	NaN	1	1	Median	982220000	848150000	134070000	0	0	0	503710000	407010000	96706000	376570000	347330000	29236000	101940000	93807000	8129300	40329	5847	37947	247390;247391;247392;247393;247394	331760;331761;331762;331763;331764	331760	3579		5	
PHPSTAESKAPTPKFDLLASNFPPLPGSSSR	2	Unmodified	3232.6517	0.65167642	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		90.342	90.342	4	0.057916	80517	160511_QHF_FH_JSI11i_3	16.006	11.317			2.208	2.1053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.208	2.1053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36634000	9799800	26834000	0	0	0	0	0	0	36634000	9799800	26834000	0	0	0	40330	3206	37948	247395	331765	331765			1	
PHTLWVAFAK	1	Unmodified	1168.6393	0.63931423	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				73.902	65.316	3	0.043331	34838	160513_QHF_FH_JSI9Kac_6	27.481	11.104			8.1354	7.0263	NaN	1	1	Median	8.1354	7.0263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13682000	1400400	12282000	13682000	1400400	12282000	0	0	0	0	0	0	0	0	0	40331	4863	37949	247396	331766	331766			1	
PIAMQSLWNIK	1	Unmodified	1299.7009	0.70092821	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.51	1	3	1				1			1	1	3	1	17.692	16.109	3	0.057305	10206	160513_QHF_FH_JSI12Kac_4	22.474	6.2207			4.6168	4.1571	38.224	6	6	Median	5.5221	4.6936	NaN	1	1	Median	5.6061	6.841	NaN	1	1	Median	3.86	3.5061	51.145	3	3	Median	3.4165	3.6819	NaN	1	1	Median	1934600000	364150000	1570500000	249160000	48386000	200780000	266260000	40349000	225910000	1404200000	271570000	1132700000	14979000	3848900	11130000	40332	280	37950	247397;247398;247399;247400;247401;247402	331767;331768;331769;331770;331771;331772	331771			6	
PIWTRNPDDITNEEYGEFYK	1	Unmodified	2486.139	0.13901926	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	5	1	1	74.557	73.528	3	5.142E-05	61747	160511_QHF_FH_JSI10i_3	61.477	54.499			0.66237	0.71085	23.035	8	7	Median	0.84828	0.68865	NaN	1	1	Median	0.6365	0.74223	30.438	5	4	Median	0.7262	0.67176	NaN	1	1	Median	0.6686	0.66381	NaN	1	1	Median	1014000000	684680000	329360000	26421000	15788000	10633000	535600000	377460000	158140000	375110000	241370000	133740000	76909000	50062000	26847000	40333	880	37951	247403;247404;247405;247406;247407;247408;247409;247410;247411	331773;331774;331775;331776;331777;331778;331779;331780;331781;331782;331783	331775			11	
PKYPGIK	2	Unmodified	801.47487	0.47487467	1574	P45984	MAPK9	Mitogen-activated protein kinase 9	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		65.187	65.187	1	0.048616	58105	160511_QHF_FH_JSI11i_3	33.738	8.7398			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18860000	18860000	0	0	0	0	0	0	0	18860000	18860000	0	0	0	0	40334	1574	37952	247412	331784	331784			1	
PLDTISQK	1	Unmodified	900.49165	0.49164694	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			63.028	62.422	2	0.021772	55866	160511_QHF_FH_JSI10i_1	55.441	13.939			3.0183	2.4682	234.05	3	3	Median	3.0183	2.4682	NaN	1	1	Median	0.67429	0.79434	317.79	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	167820000	63903000	103910000	69859000	16477000	53383000	97956000	47427000	50530000	0	0	0	0	0	0	40335	5719	37953	247413;247414;247415	331785;331786;331787	331785			3	
PLNVTVIR	0	Unmodified	910.56	0.56000128	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			88.291	88.188	2	0.019783	80171	160511_QHF_FH_JSI10i_1	46.426	7.6341			0.61036	0.65657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61036	0.65657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10181000	6281600	3899300	0	0	0	10181000	6281600	3899300	0	0	0	0	0	0	40336	111	37954	247416	331788	331788			1	
PLPEILK	1	Unmodified	808.50584	0.50584045	5848				yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.97	102.83	2	0.014953	88723	160511_QHF_FH_JSI12i_2	64.803	12.12	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	333870000	0	333870000	0	0	0	0	0	0	12319000	0	12319000	321550000	0	321550000	40337	5848	37955	247417;247418	331789;331790	331789			2	
PLTPSIGAK	1	Unmodified	882.51747	0.51746776	2484	Q14004	CDK13	Cyclin-dependent kinase 13	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			66.016	65.684	2	0.015773	59465	160511_QHF_FH_JSI10i_1	54.157	6.3086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17706000	17706000	0	0	0	0	17706000	17706000	0	0	0	0	0	0	0	40338	2484	37956	247419	331791	331791			1	
PLVFLER	0	Unmodified	872.51199	0.51198846	4068	Q96F63	CCDC97	Coiled-coil domain-containing protein 97	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		67.217	67.217	2	0.025293	59877	160511_QHF_FH_JSI11i_3	57.463	44.475			0.20852	0.19828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20852	0.19828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30805000	27617000	3188200	0	0	0	0	0	0	30805000	27617000	3188200	0	0	0	40339	4068	37957	247420	331792	331792			1	
PMFIVNTNVPR	0	Acetyl (Protein N-term)	1328.6911	0.69109181	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		100.37	100.25	2	5.2997E-06	91068	160511_QHF_FH_JSI11i_1	105.94	92.481			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40340	1048	37958	247421;247422	331793;331794;331795	331794			3	
PMGILVK	1	Unmodified	756.45678	0.45678176	5836				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		56.92	47.783	2	0.012629	25902	160513_QHF_FH_JSI11Kac_6	77.906	62.685	+		2.7426	2.3697	62.987	3	2	Median	2.7426	2.3697	NaN	1	1	Median	3.7635	4.3154	NaN	1	1	Median	1.2641	1.225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49234000	14053000	35181000	14144000	4574600	9569600	13278000	1067700	12210000	21812000	8410700	13402000	0	0	0	40341	5836	37959	247423;247424;247425	331796;331797;331798	331796			3	
PMIGKLK	2	Acetyl (K)	827.4939	0.49389555	2234	Q05823	RNASEL	2-5A-dependent ribonuclease	yes	yes	1	0	0	1	By MS/MS		By MS/MS		16	0									2	1		1		73.894	64.924	2	0.025209	35242	160513_QHF_FH_JSI11Kac_6	79.454	24.013			5.0751	4.5533	13.013	2	2	Median	4.8557	4.1531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.3044	4.9922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	238940000	43335000	195610000	89216000	15773000	73444000	0	0	0	149730000	27562000	122160000	0	0	0	40342	2234	37960	247426;247427	331799;331800	331799	2339		2	
PMMYVALTYDHR	0	Unmodified	1495.6952	0.69519091	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		43.064	42.4	3	0.052887	38057	160511_QHF_FH_JSI10i_1	13.964	1.0859			1.0733	1.0368	50.187	3	0	Median	2.9017	2.421	NaN	1	0	Median	0.84246	0.99516	NaN	1	0	Median	1.0733	1.0368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1378100000	556180000	821960000	353050000	117950000	235100000	510390000	214450000	295940000	514710000	223780000	290930000	0	0	0	40343	1465	37961	247428;247429;247430	331801	331801			1	
PMVLLVGQYSTGK	1	Unmodified	1391.7483	0.74827234	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	0			By MS/MS		16	0									1			1		78.487	69.173	2	0.0046716	37818	160513_QHF_FH_JSI11Kac_6	69.721	50.975			0.42663	0.42104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42663	0.42104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15626000	12412000	3214600	0	0	0	0	0	0	15626000	12412000	3214600	0	0	0	40344	4727	37962	247431	331802	331802			1	
PNSEPASLLELFNSIATQGELVR	0	Unmodified	2484.286	0.28601785	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			102.79	102.74	3	1.3993E-07	91296	160511_QHF_FH_JSI10i_2	87.963	73.503			7.9955	8.1392	104.34	2	2	Median	4.5528	3.892	NaN	1	1	Median	14.041	17.021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131120000	7829000	123290000	65691000	3587800	62103000	65426000	4241200	61185000	0	0	0	0	0	0	40345	1226	37963	247432;247433	331803;331804	331804			2	
PPAITGVESFMTK	1	Oxidation (M)	1392.6959	0.69590241	2708	Q15788	NCOA1	Nuclear receptor coactivator 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				58.598	49.447	2	0.020753	26302	160513_QHF_FH_JSI9Kac_6	56.563	22.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40346	2708	37964	247434	331805	331805		2106	1	
PPAMTVK	1	Oxidation (M)	758.39966	0.39966081	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	1	0			By MS/MS	By matching	1	0	2											1	1	72.237	71.776	1	0.052118	65383	160511_QHF_FH_JSI11i_1	35.105	10.107			0.76144	0.78083	39.299	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60185	0.59139	NaN	1	0	Median	0.96336	1.031	NaN	1	0	Median	88269000	48861000	39408000	0	0	0	0	0	0	45053000	26702000	18351000	43216000	22159000	21057000	40347	2618	37965	247435;247436	331806	331806			1	
PPEPVKPEVK	2	Unmodified	1118.6336	0.63356015	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	29.882	29.817	4	0.055962	25086	160511_QHF_FH_JSI12i_3	23.851	13.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14875000	0	14875000	0	0	0	0	0	0	0	0	0	14875000	0	14875000	40348	5296	37966	247437	331807	331807			1	
PPIFEIR	0	Unmodified	870.49634	0.49633839	2259	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			68.591	67.783	2	0.057163	60196	160511_QHF_FH_JSI10i_2	50.12	40.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4538900	0	4538900	0	0	0	4538900	0	4538900	0	0	0	0	0	0	40349	2259	37967	247438	331808	331808			1	
PRRSPRMSLRSSVSQR	0	Oxidation (M)	1915.0282	0.028244217	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	1	4		By MS/MS			16	0									1		1			95.132	89.412	2	0.061009	51538	160513_QHF_FH_JSI10Kac_6	31.228	9.0299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40350	2515	37968	247439	331809	331809			1	
PSHPSEPVLAIDACEPPR	0	Unmodified	1970.952	0.95201053	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	91.633	90.979	4	0.055578	78472	160511_QHF_FH_JSI12i_2	16.494	5.8353			0.85801	0.86438	28.206	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0827	1.0552	NaN	1	0	Median	0.67997	0.70809	NaN	1	0	Median	13875000	7942500	5932700	0	0	0	0	0	0	7165900	3980200	3185700	6709400	3962300	2747100	40351	3821	37969	247440;247441	331810	331810			1	
PVGHCLEAAAVLSK	1	Unmodified	1450.7602	0.76023401	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				25.218	23.878	4	0.059596	19302	160511_QHF_FH_JSI9i_3	19.323	0			1.8454	1.492	NaN	1	1	Median	1.8454	1.492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44061000	18714000	25347000	44061000	18714000	25347000	0	0	0	0	0	0	0	0	0	40352	990	37970	247442	331811	331811			1	
PVLTQESATYIAEEYSR	0	Unmodified	1955.9476	0.94763666	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	69.234	68.79	3	0.013791	62727	160511_QHF_FH_JSI12i_1	31.801	25.48			2.3208	2.7513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3208	2.7513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111960000	18695000	93266000	0	0	0	62913000	18695000	44218000	0	0	0	49049000	0	49049000	40353	1254	37971	247443;247444	331812;331813	331812			2	
PWALTFSYGR	0	Unmodified	1196.5978	0.59784335	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	0	By MS/MS		By matching		16	0									2	1		1		83.458	74.491	2	3.0004E-06	40679	160513_QHF_FH_JSI9Kac_6	119.21	112.15			2.7201	2.4465	24.805	2	0	Median	2.4225	2.0529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.0543	2.9155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	920600000	146030000	774570000	459120000	81379000	377740000	0	0	0	461480000	64652000	396830000	0	0	0	40354	803;944	37972	247445;247446	331814	331814			1	
PWISLPR	0	Unmodified	867.49667	0.49667274	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		2	1	70.106	69.509	2	0.0094702	57051	160511_QHF_FH_JSI9i_3	83.287	36.936			1.2198	1.0653	64.467	4	4	Median	0.87534	0.71093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0172	1.9299	26.838	2	2	Median	0.59848	0.60654	NaN	1	1	Median	182020000	90166000	91858000	78725000	39583000	39143000	0	0	0	68719000	31881000	36838000	34580000	18703000	15878000	40355	2013;1204	37973	247447;247448;247449;247450	331815;331816;331817;331818	331816			4	
PYFPIPEEYTFIQNVPLEDR	0	Unmodified	2466.2107	0.21072764	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	101.57	101.49	3	4.321E-05	89318	160511_QHF_FH_JSI9i_2	77.031	63.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	508120000	0	508120000	299460000	0	299460000	93236000	0	93236000	0	0	0	115420000	0	115420000	40356	2161	37974	247451;247452;247453	331819;331820;331821	331821			3	
QAAAAAAAAAATAAWTGTTFTK	1	Unmodified	2022.0171	0.017053633	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			85.402	84.79	3	0.047326	75394	160511_QHF_FH_JSI10i_2	21.172	4.8652			1.8017	2.1992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8017	2.1992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49001000	17100000	31901000	0	0	0	49001000	17100000	31901000	0	0	0	0	0	0	40357	4161	37975	247454	331822	331822			1	
QAAAAGIFLNNVK	1	Unmodified	1315.7248	0.72483478	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.78		4	3					3		2	3	3	2	63.558	59.81	2	1.5195E-10	51139	160511_QHF_FH_JSI12i_2	150.81	140.86			0.97366	0.9272	26.943	10	4	Median	0.97366	0.81708	14.355	2	0	Median	0.807	0.95061	35.793	3	2	Median	1.165	1.1675	32.423	3	2	Median	0.98981	1.0481	20.891	2	0	Median	437510000	233760000	203750000	61705000	28434000	33271000	66659000	36827000	29832000	139120000	78044000	61072000	170030000	90450000	79579000	40358	4915	37976	247455;247456;247457;247458;247459;247460;247461;247462;247463;247464	331823;331824;331825;331826;331827;331828;331829;331830;331831;331832;331833	331824			11	
QAAAHTDHLR	0	Unmodified	1118.5581	0.5581038	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.8782	4.9707	2	3.7338E-43	2490	160511_QHF_FH_JSI12i_3	197.27	150.19			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40359	2780	37977	247465	331834	331834			1	
QAAASATQTIAAAQHAASTPK	1	Unmodified	1994.0181	0.018116265	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	41.51	40.905	3	3.4381E-47	34725	160511_QHF_FH_JSI12i_3	210.29	193.79			0.94425	0.9561	14.664	9	0	Median	0.96021	0.81485	NaN	1	0	Median	0.78495	0.94769	14.943	2	0	Median	1.012	0.98727	18.928	3	0	Median	0.94425	0.9561	13.283	3	0	Median	3091100000	1559000000	1532100000	319190000	152670000	166520000	556010000	279040000	276980000	1108400000	561400000	546980000	1107500000	565900000	541630000	40360	5616	37978	247466;247467;247468;247469;247470;247471;247472;247473;247474	331835;331836;331837;331838;331839;331840;331841;331842;331843;331844;331845;331846;331847;331848;331849;331850;331851	331851			16	
QAACIWLLSLVR	0	Unmodified	1428.7911	0.7911402	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	94.297	85.72	2	7.4928E-24	50245	160513_QHF_FH_JSI10Kac_6	162.36	124.89			0.74644	0.76618	46.771	5	3	Median	0.50159	0.42977	NaN	1	1	Median	0.74644	0.88563	NaN	1	0	Median	0.77101	0.72045	8.705	2	2	Median	1.458	1.5644	NaN	1	0	Median	722060000	397890000	324170000	54586000	37563000	17023000	205670000	112130000	93538000	372440000	209210000	163230000	89368000	38994000	50374000	40361	2997	37979	247475;247476;247477;247478;247479	331852;331853;331854;331855;331856;331857	331857			6	
QAACIWLLSLVRK	1	Unmodified	1556.8861	0.88610322	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			86.26	80.559	3	0.015023	45278	160513_QHF_FH_JSI10Kac_6	44.132	24.293			2.2535	2.6734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2535	2.6734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44233000	14382000	29851000	0	0	0	44233000	14382000	29851000	0	0	0	0	0	0	40362	2997	37980	247480	331858	331858			1	
QAADAEMEK	1	Unmodified	991.42806	0.42806041	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.9639	8.6009	2	0.00030298	6425	160511_QHF_FH_JSI10i_1	93.598	59.345			0.84235	0.75347	27.641	4	2	Median	0.96216	0.78675	NaN	1	0	Median	0.57491	0.67889	NaN	1	1	Median	0.73746	0.72161	NaN	1	1	Median	1.1925	1.2481	NaN	1	0	Median	477760000	269110000	208650000	128970000	69522000	59444000	143730000	96597000	47135000	84254000	48223000	36030000	120810000	54770000	66039000	40363	2636	37981	247481;247482;247483;247484	331859;331860;331861;331862	331861			4	
QAADQMK	1	Unmodified	790.36434	0.36433794	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.0553	4.7137	2	0.045207	2718	160511_QHF_FH_JSI12i_1	48.561	28.925			0.47916	0.49886	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47916	0.49886	NaN	1	1	Median	567130000	381400000	185730000	0	0	0	0	0	0	0	0	0	567130000	381400000	185730000	40364	1426	37982	247485	331863	331863			1	
QAAEEVWAR	0	Unmodified	1058.5145	0.51450765	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			28.033	27.111	2	0.020579	23679	160511_QHF_FH_JSI10i_2	44.203	26.818			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40365	4244	37983	247486	331864	331864			1	
QAAEVAAEK	1	Unmodified	915.46616	0.46616048	5060	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	8.7621	7.0178	2	4.6936E-05	5740	160511_QHF_FH_JSI11i_1	117.31	39.163			1.0805	1.012	13.148	5	2	Median	1.2211	1.012	NaN	1	0	Median	0.78025	0.9156	NaN	1	1	Median	1.2075	1.1765	14.076	2	1	Median	0.94571	0.99094	NaN	1	0	Median	863490000	485470000	378010000	199790000	94695000	105090000	235480000	147420000	88054000	228680000	131320000	97358000	199550000	112040000	87510000	40366	5060	37984	247487;247488;247489;247490;247491	331865;331866;331867;331868;331869;331870;331871;331872	331865			8	
QAAGVISLPVGGNK	1	Unmodified	1309.7354	0.73539946	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	55.972	55.317	2	5.8351E-05	50383	160511_QHF_FH_JSI12i_1	118.28	110.63			1.1808	1.1784	40.67	4	2	Median	0.67604	0.55518	NaN	1	1	Median	1.1994	1.3626	NaN	1	1	Median	1.2091	1.1531	NaN	1	0	Median	1.1625	1.2042	NaN	1	0	Median	149820000	81120000	68701000	33952000	23847000	10105000	34733000	16377000	18357000	29817000	12337000	17480000	51318000	28559000	22759000	40367	4254	37985	247492;247493;247494;247495	331873;331874;331875	331873			3	
QAAKPPISK	2	Unmodified	938.55492	0.5549159	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	9.4042	9.5017	3	0.052273	6760	160511_QHF_FH_JSI12i_3	25.437	20.971			0.8709	0.87785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8709	0.87785	NaN	1	0	Median	86384000	46180000	40204000	0	0	0	0	0	0	0	0	0	86384000	46180000	40204000	40368	3133	37986	247496	331876	331876			1	
QAALEEEQAR	0	Unmodified	1143.552	0.55201537	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	14.211	11.532	2	6.1564E-44	9952	160511_QHF_FH_JSI12i_1	218.04	205.06			1.2262	1.239	4.0472	6	0	Median	1.4134	1.166	NaN	1	0	Median	1.0968	1.2776	NaN	1	0	Median	1.2298	1.205	0.60275	2	0	Median	1.1969	1.2783	1.0744	2	0	Median	595360000	275280000	320080000	156190000	70085000	86109000	148750000	64391000	84358000	147560000	73176000	74379000	142860000	67627000	75231000	40369	2425	37987	247497;247498;247499;247500;247501;247502	331877;331878;331879;331880;331881;331882;331883;331884;331885	331880			9	
QAALGIMQMVEDTLIEHAHTK	1	Unmodified	2335.1664	0.16643676	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		101.6	101.52	4	8.1072E-14	84117	160511_QHF_FH_JSI10i_3	125.23	117.53			0.72601	0.76905	36.509	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85099	0.99557	NaN	1	0	Median	0.61938	0.59407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	593560000	358590000	234970000	0	0	0	282160000	156870000	125290000	311390000	201710000	109680000	0	0	0	40370	1060	37988	247503;247504	331886;331887	331887			2	
QAALQQTK	1	Unmodified	886.48723	0.48723027	1166	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	7.3671	6.8698	2	0.048763	4780	160511_QHF_FH_JSI12i_1	37.549	12.773			1.1492	1.0628	18.601	2	0	Median	1.1318	0.93183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1668	1.2122	NaN	1	0	Median	124690000	52111000	72581000	71418000	27026000	44391000	0	0	0	0	0	0	53275000	25085000	28189000	40371	1166	37989	247505;247506	331888;331889	331888			2	
QAALQVAEGFISR	0	Unmodified	1388.7412	0.74121312	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.31	5	8	2					5	2	6	5	6	5	74.791	71.46	2;3	1.2059E-52	64521	160511_QHF_FH_JSI10i_2	212.2	194.34			0.88434	0.93755	14.446	21	8	Median	1.1934	1.0393	7.7391	5	3	Median	0.73941	0.87551	7.8382	5	2	Median	0.86874	0.8553	9.4878	6	2	Median	0.9579	1.0482	21.745	5	1	Median	2534000000	1340600000	1193400000	328940000	154200000	174740000	565190000	316510000	248680000	1073600000	563940000	509620000	566270000	305930000	260350000	40372	1490	37990	247507;247508;247509;247510;247511;247512;247513;247514;247515;247516;247517;247518;247519;247520;247521;247522;247523;247524;247525;247526;247527;247528	331890;331891;331892;331893;331894;331895;331896;331897;331898;331899;331900;331901;331902;331903;331904;331905;331906;331907;331908;331909;331910;331911;331912;331913;331914;331915;331916;331917;331918;331919;331920;331921	331913			32	
QAANLQDCYR	0	Unmodified	1237.551	0.55096951	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.281	19.789	2	0.0087309	17246	160511_QHF_FH_JSI12i_1	74.267	65.419			1.2855	1.3338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2855	1.3338	NaN	1	0	Median	29191000	10943000	18248000	0	0	0	0	0	0	0	0	0	29191000	10943000	18248000	40373	1557	37991	247529	331922	331922			0	
QAAPCVLFFDELDSIAK	1	Unmodified	1922.9448	0.94479989	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.73	0.445	3	8								1	4	3	3	102.09	101.99	2;3	3.3627E-37	87879	160511_QHF_FH_JSI12i_2	237.48	210.47			0.91981	0.95556	22.803	10	3	Median	0.95709	0.8224	NaN	1	0	Median	0.79318	0.98552	17.668	3	0	Plateau	0.65141	0.65702	23.989	3	0	Plateau	1.0007	1.112	19.963	3	3	Plateau	1227000000	655920000	571130000	59340000	29551000	29788000	277010000	156760000	120240000	408190000	234170000	174020000	482510000	235430000	247080000	40374	1846	37992	247530;247531;247532;247533;247534;247535;247536;247537;247538;247539;247540	331923;331924;331925;331926;331927;331928;331929	331923			7	
QAAPPIELDAVWEDIRER	0	Unmodified	2107.0698	0.069817485	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	95.472	95.338	3	0.0015603	83882	160511_QHF_FH_JSI9i_2	49.463	33.697			1.069	1.0918	1.8791	3	0	Median	1.2659	1.0918	NaN	1	0	Median	0.92106	1.1187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.069	1.0781	NaN	1	0	Median	161660000	80535000	81126000	30082000	14799000	15283000	52016000	29313000	22703000	0	0	0	79563000	36424000	43139000	40375	521	37993	247541;247542;247543	331930;331931;331932	331930			3	
QAASFYCSK	1	Unmodified	1060.4648	0.46478027	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.45	5	4					3			2	3	4	3	21.596	19.054	2	0.00019186	15651	160511_QHF_FH_JSI12i_2	85.676	48.117			1.0394	1.1746	39.609	12	5	Median	1.7489	1.4956	10.253	2	1	Median	0.86436	1.0468	33.002	3	1	Median	0.67761	0.66498	38.286	4	3	Median	1.1877	1.2711	0.27623	3	0	Median	1000900000	551310000	449620000	104390000	43408000	60986000	225490000	114460000	111030000	449190000	292250000	156940000	221850000	101190000	120660000	40376	1395	37994	247544;247545;247546;247547;247548;247549;247550;247551;247552;247553;247554;247555	331933;331934;331935;331936;331937;331938;331939;331940;331941;331942;331943;331944;331945;331946;331947;331948;331949	331935			17	
QAASGLVGQENAR	0	Unmodified	1299.6531	0.6531264	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.04	4	4				3	4			2	4	4	5	20.803	17.084	2	5.7915E-22	14557	160511_QHF_FH_JSI11i_1	171.32	133.77			0.99954	1.0192	8.8091	14	0	Median	1.1667	0.97551	7.8768	2	0	Median	0.79629	0.93577	7.892	4	0	Median	1.0631	1.0384	10.891	4	0	Median	0.99954	1.0696	4.6238	4	0	Median	1969100000	1030800000	938340000	589640000	284170000	305480000	449200000	254840000	194360000	385790000	207600000	178190000	544460000	284150000	260310000	40377	5496	37995	247556;247557;247558;247559;247560;247561;247562;247563;247564;247565;247566;247567;247568;247569;247570	331950;331951;331952;331953;331954;331955;331956;331957;331958;331959;331960;331961;331962;331963;331964;331965;331966;331967;331968	331951			19	
QAASKAASK	2	Acetyl (K)	902.48214	0.48214489	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.49					3	2					2	2	1	5.778	-1.4792	2	0.0011263	1930	160513_QHF_FH_JSI10Kac_3	90.108	63.506			0.84587	0.9702	13.314	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83876	0.99439	3.4828	2	0	Median	0.96177	0.92631	24.397	2	0	Median	0.84587	0.88578	NaN	1	0	Median	45758000	23727000	22031000	0	0	0	23941000	12537000	11404000	12641000	6076800	6564700	9175300	5112500	4062700	40378	4657	37996	247571;247572;247573;247574;247575	331969;331970;331971;331972;331973	331972	3210		5	
QAASPLEPK	1	Unmodified	939.50255	0.50254598	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.598	16.995	2	0.00051067	14278	160511_QHF_FH_JSI11i_1	83.647	68.266			0.80366	0.93625	14.857	3	1	Median	1.3417	1.0952	NaN	1	0	Median	0.8003	0.93625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80366	0.81379	NaN	1	0	Median	309140000	154270000	154870000	102860000	43012000	59846000	91066000	51325000	39742000	0	0	0	115210000	59932000	55280000	40379	2587	37997	247576;247577;247578;247579	331974;331975;331976;331977	331974			4	
QAASSLQQASLK	1	Unmodified	1230.6568	0.65681479	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.41	4	4	5		4	5	2			6	6	7	5	26.211	21.403	2	4.7367E-161	5745	160513_QHF_FH_JSI9Kac_3	286.86	251.24			0.92062	0.9988	21.123	22	3	Median	1.2711	1.0644	27.13	5	1	Median	0.81235	0.97308	19.968	6	0	Median	0.9279	0.93317	23.422	6	2	Median	0.94906	1.0355	14.57	5	0	Median	10195000000	4706100000	5488900000	2699200000	1266100000	1433100000	2873800000	1406100000	1467700000	2109600000	931100000	1178500000	2512400000	1102800000	1409600000	40380	1480	37998	247580;247581;247582;247583;247584;247585;247586;247587;247588;247589;247590;247591;247592;247593;247594;247595;247596;247597;247598;247599;247600;247601;247602;247603	331978;331979;331980;331981;331982;331983;331984;331985;331986;331987;331988;331989;331990;331991;331992;331993;331994;331995;331996;331997;331998;331999;332000;332001;332002;332003;332004;332005;332006;332007;332008;332009;332010;332011;332012;332013;332014;332015;332016	331998			39	
QAATMSEVEWR	0	Unmodified	1306.5976	0.59758535	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	43.012	41.796	2	5.0121E-05	35888	160511_QHF_FH_JSI12i_2	95.483	76.703			1.0603	1.0351	4.609	2	1	Median	1.1626	1.0019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96699	1.0694	NaN	1	0	Median	140210000	67227000	72980000	55981000	28944000	27037000	0	0	0	0	0	0	84226000	38283000	45943000	40381	5295	37999	247604;247605	332017;332018	332017			2	
QAAVCQVK	1	Unmodified	902.46439	0.46438634	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.2991	9.1764	2	0.0071512	6864	160511_QHF_FH_JSI11i_1	58.819	26.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40382	1005	38000	247606	332019	332019			1	
QAAVGQGDFHLLDHR	0	Unmodified	1662.8227	0.82265134	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	45.333	44.925	3;4	5.2489E-05	38288	160511_QHF_FH_JSI12i_3	66.809	62.243			1.0212	1.0367	38.067	5	0	Median	NaN	NaN	NaN	0	0	Median	1.6089	1.8886	NaN	1	0	Median	0.97282	0.92073	16.771	2	0	Median	0.8404	0.84723	28.721	2	0	Median	388120000	197260000	190860000	0	0	0	26898000	12767000	14131000	193390000	97162000	96225000	167840000	87331000	80509000	40383	382	38001	247607;247608;247609;247610;247611	332020;332021;332022;332023	332023			4	
QAAYEMR	0	Unmodified	867.39089	0.39088704	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.939	12.149	2	0.017936	9573	160511_QHF_FH_JSI12i_2	60.709	25.075			0.9166	1.0338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9166	1.0338	NaN	1	0	Median	29702000	14904000	14798000	0	0	0	0	0	0	0	0	0	29702000	14904000	14798000	40384	4628	38002	247612	332024	332024			1	
QACTPMFR	0	Unmodified	1009.4474	0.44735606	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	26.649	25.965	2	0.0034455	22665	160511_QHF_FH_JSI10i_2	72.492	52.856			0.76187	0.86502	31.948	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0526	1.2944	NaN	1	0	Median	1.3512	1.3447	53.719	2	0	Median	1.034	1.1439	NaN	1	0	Median	380200000	181550000	198650000	0	0	0	61891000	31021000	30870000	216320000	102070000	114250000	101990000	48450000	53537000	40385	1415	38003	247613;247614;247615;247616	332025;332026;332027;332028;332029	332028			5	
QACVLMIK	1	Unmodified	961.50889	0.50889369	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.54	3	3					2	3		1	3	4	3	48.229	43.548	2	0.00011034	37193	160511_QHF_FH_JSI12i_2	128.57	103.64			0.98904	1.1435	24.969	10	4	Median	1.6782	1.5045	NaN	1	1	Median	0.77622	0.90534	15.672	3	1	Plateau	0.82413	0.82605	13.483	3	1	Median	1.2671	1.3266	7.8739	3	1	Median	467860000	229300000	238560000	36399000	12528000	23871000	77920000	42657000	35263000	197930000	103710000	94221000	155610000	70408000	85204000	40386	1436	38004	247617;247618;247619;247620;247621;247622;247623;247624;247625;247626;247627	332030;332031;332032;332033;332034;332035;332036;332037;332038	332031			9	
QADEEKHK	2	Acetyl (K)	1025.4778	0.47778779	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		4.5739	-2.8408	3	0.0021711	1360	160513_QHF_FH_JSI11Kac_4	71.349	31.348			0.20136	0.19665	106.49	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90278	1.0345	NaN	1	0	Median	0.1718	0.16714	22.997	2	0	Median	NaN	NaN	NaN	0	0	Median	16651000	13666000	2985600	0	0	0	2343700	1359000	984800	14308000	12307000	2000800	0	0	0	40387	231	38005	247628;247629;247630	332039;332040;332041	332040	129		3	
QADEIEKILCHK	2	Acetyl (K)	1524.7606	0.76062794	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.164	62.399	3	0.0065261	33353	160513_QHF_FH_JSI11Kac_5	54.023	44.573			0.098944	0.096782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.098944	0.096782	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4090100	3901200	188940	0	0	0	0	0	0	4090100	3901200	188940	0	0	0	40388	1905	38006	247631	332042	332042	1902;1903		1	
QADFEAHNILR	0	Unmodified	1312.6524	0.65239812	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		6							2	1	2	3	2	42.114	39.033	2;3	6.844E-09	34355	160511_QHF_FH_JSI10i_2	126.71	108.57			0.91113	1.0193	43.518	8	3	Median	1.2038	1.036	NaN	1	0	Median	0.64387	0.79325	33.154	2	0	Median	1.0146	1.0415	39.827	3	1	Median	1.0897	1.1868	84.998	2	2	Median	1243500000	624350000	619150000	181320000	78585000	102730000	342100000	175930000	166180000	639230000	324400000	314830000	80852000	45436000	35416000	40389	1693	38007	247632;247633;247634;247635;247636;247637;247638;247639	332043;332044;332045;332046;332047;332048;332049;332050;332051;332052	332049			9	
QADFVQTPITGIFGGHIR	0	Unmodified	1956.0217	0.02174508	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							3	2	1	1	87.519	86.943	3	2.4264E-07	75429	160511_QHF_FH_JSI12i_3	108.96	103.3			1.0127	1.0046	19.185	6	2	Median	1.3018	1.1236	26.819	2	2	Median	0.97861	1.1701	10.584	2	0	Median	0.99658	0.92765	NaN	1	0	Median	0.82582	0.8342	NaN	1	0	Median	379560000	190450000	189110000	62241000	27656000	34585000	105280000	58054000	47227000	116590000	58761000	57826000	95450000	45981000	49469000	40390	2567	38008	247640;247641;247642;247643;247644;247645;247646	332053;332054;332055;332056;332057;332058;332059;332060;332061	332061			9	
QADGAASAPTEEEEEVVK	1	Unmodified	1858.8432	0.84323117	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.689	36.081	2	1.1491E-52	32699	160511_QHF_FH_JSI12i_1	216.39	201.83			0.9104	0.95758	24.188	4	1	Median	1.1696	0.92657	NaN	1	0	Median	0.83892	0.98962	NaN	1	0	Median	0.6396	0.61153	NaN	1	1	Median	0.98797	1.0367	NaN	1	0	Median	153370000	84324000	69041000	26138000	10252000	15886000	46172000	27076000	19096000	40084000	24572000	15512000	40971000	22423000	18548000	40391	5627	38009	247647;247648;247649;247650	332062;332063;332064;332065;332066;332067;332068;332069	332064			8	
QADIIGK	1	Unmodified	743.41775	0.41775372	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.906	16.448	2	0.037155	14066	160511_QHF_FH_JSI12i_1	48.787	18.98			0.94631	0.9922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94631	0.9922	NaN	1	0	Median	156280000	81686000	74596000	0	0	0	0	0	0	0	0	0	156280000	81686000	74596000	40392	23	38010	247651	332070	332070			1	
QADIIGKPSR	1	Unmodified	1083.6037	0.60365701	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.57	4.27		1	5					1			3	2	2	17.119	15.323	2;3	0.017024	12643	160511_QHF_FH_JSI10i_3	66.595	57.381			0.89448	0.98935	25.958	6	3	Median	NaN	NaN	NaN	0	0	Median	0.64734	0.7724	41.269	2	1	Median	0.92326	0.86722	26.542	2	1	Median	0.98244	1.0278	11.649	2	1	Median	781810000	449570000	332240000	0	0	0	103970000	65843000	38125000	362050000	203670000	158390000	315790000	180060000	135730000	40393	23	38011	247652;247653;247654;247655;247656;247657;247658	332071;332072;332073;332074;332075;332076;332077	332074			7	
QADLYISEGLHPR	0	Unmodified	1497.7576	0.75759147	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.37		8	5					4		4	5	5	3	50.793	47.06	2;3	4.5812E-82	40451	160511_QHF_FH_JSI11i_2	286.73	275.17			0.96461	1.0076	7.1137	14	3	Median	1.1675	0.98707	5.2035	4	1	Median	0.83745	1.0191	4.4865	3	0	Plateau	1.0559	1.0666	9.9079	4	1	Median	0.93392	1.0353	4.9126	3	1	Plateau	3892900000	2025400000	1867500000	633180000	300970000	332220000	826060000	475610000	350460000	1257200000	660940000	596300000	1176400000	587890000	588510000	40394	1494;3835	38012	247659;247660;247661;247662;247663;247664;247665;247666;247667;247668;247669;247670;247671;247672;247673;247674;247675	332078;332079;332080;332081;332082;332083;332084;332085;332086;332087;332088;332089;332090;332091;332092;332093;332094;332095;332096;332097;332098;332099;332100;332101;332102;332103;332104	332093			27	
QADMQEEK	1	Unmodified	977.41241	0.41241035	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.1181	5.7942	2	1.0872E-21	3618	160511_QHF_FH_JSI11i_1	189.82	141.07			1.0468	1.0655	26.095	4	0	Median	1.5913	1.2943	NaN	1	0	Median	1.2105	1.4325	NaN	1	0	Median	0.90519	0.87716	NaN	1	0	Median	0.80528	0.86601	NaN	1	0	Median	1451900000	687560000	764320000	290670000	113630000	177050000	406310000	184660000	221650000	370110000	165700000	204410000	384790000	223570000	161220000	40395	1862	38013	247676;247677;247678;247679	332105;332106;332107;332108;332109;332110;332111;332112	332106			8	
QADNPHVALYQAR	0	Unmodified	1481.7375	0.73752473	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8.75	6.76		2						1	1			1	3	31.53	26.453	2;3	3.2459E-06	22241	160511_QHF_FH_JSI11i_2	123.62	115.73			0.34741	0.34676	67.682	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25441	0.2464	NaN	1	1	Median	0.75259	0.81617	13.01	3	1	Plateau	200090000	145610000	54477000	0	0	0	0	0	0	148770000	121040000	27733000	51317000	24573000	26744000	40396	5633	38014	247680;247681;247682;247683	332113;332114;332115	332114			3	
QADTVYFLPITPQFVTEVIK	1	Unmodified	2308.2355	0.23548583	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.714	8	8	3							6	5	4	4	102.52	102.41	2;3	1.1328E-82	93018	160511_QHF_FH_JSI12i_1	244.17	232.37			0.93307	0.98116	9.8811	19	6	Median	1.1582	0.96041	15.966	6	4	Median	0.8448	1.0267	6.5275	5	2	Median	0.95154	0.94918	5.1352	4	0	Median	0.90879	0.9936	1.8195	4	0	Median	3397200000	1739600000	1657600000	511920000	242500000	269420000	1191100000	627580000	563480000	577110000	294370000	282740000	1117200000	575160000	542000000	40397	1372	38015	247684;247685;247686;247687;247688;247689;247690;247691;247692;247693;247694;247695;247696;247697;247698;247699;247700;247701;247702	332116;332117;332118;332119;332120;332121;332122;332123;332124;332125;332126;332127;332128;332129;332130;332131;332132;332133;332134;332135;332136;332137;332138;332139;332140;332141;332142;332143;332144;332145	332127			30	
QADVNLVNAK	1	Unmodified	1070.572	0.57202253	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	5.45	4		3		2	4				4	4	3	2	30.794	25.571	2	7.763E-11	24059	160511_QHF_FH_JSI9i_1	143.37	101.93			0.91063	0.95778	20.17	13	3	Median	1.2226	1.001	33.031	4	3	Median	0.83415	0.97789	4.8524	4	0	Median	0.92439	0.91122	7.3766	3	0	Plateau	0.86071	0.9334	3.6476	2	0	Median	6193000000	3114400000	3078600000	1518200000	602910000	915290000	1664000000	945110000	718920000	1515200000	742440000	772740000	1495600000	823960000	671650000	40398	309	38016	247703;247704;247705;247706;247707;247708;247709;247710;247711;247712;247713;247714;247715	332146;332147;332148;332149;332150;332151;332152;332153;332154;332155;332156;332157;332158;332159;332160;332161;332162;332163;332164	332161			19	
QADYVPSDQDLLR	0	Unmodified	1518.7314	0.7314363	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0		By MS/MS		By MS/MS	7	6	1					1					1		1	61.24	56.431	2	0.00052774	50641	160511_QHF_FH_JSI10i_1	89.301	76.1			0.64955	0.73847	31.881	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50307	0.58942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83869	0.9252	NaN	1	0	Median	353730000	234000000	119720000	0	0	0	351340000	232890000	118450000	0	0	0	2386600	1113900	1272700	40399	2048	38017	247716;247717	332165;332166	332165			2	
QAEAFLNNQEYVLAHTEMPTTLEGAEAAIK	1	Unmodified	3288.5973	0.59725759	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		98.392	98.237	3;4	0.013426	86971	160511_QHF_FH_JSI10i_2	27.686	20.021			0.86298	0.8424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86298	0.8424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14948000	11444000	3503900	0	0	0	4606000	4606000	0	10342000	6838500	3503900	0	0	0	40400	2162	38018	247718;247719	332167;332168	332168			2	
QAEDCITR	0	Unmodified	991.43929	0.4392938	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	9.2579	9.0222	2	0.0063208	6855	160511_QHF_FH_JSI10i_1	71.692	49.2			0.4004	0.47478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4004	0.47478	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55638000	39394000	16244000	0	0	0	55638000	39394000	16244000	0	0	0	0	0	0	40401	380	38019	247720;247721	332169;332170	332170			2	
QAEEIGEK	1	Unmodified	902.43453	0.434526	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7638	8.413	2	0.00076118	6329	160511_QHF_FH_JSI12i_1	98.582	26.09			0.75489	0.80952	16.781	4	0	Median	1.0664	0.87317	NaN	1	0	Median	0.69361	0.82759	NaN	1	0	Median	0.82159	0.79184	NaN	1	0	Median	0.58128	0.59927	NaN	1	0	Median	698940000	406460000	292480000	185540000	101180000	84366000	184420000	108670000	75751000	157530000	88442000	69088000	171450000	108170000	63277000	40402	2636	38020	247722;247723;247724;247725	332171;332172;332173;332174;332175	332172			5	
QAEELIQQEHADQAEIR	0	Unmodified	2006.9657	0.96574634	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.694	38.737	3	5.4096E-41	33225	160511_QHF_FH_JSI11i_2	195.17	179.91			0.79056	1.0702	21.272	4	0	Linear	0.73706	0.62245	NaN	1	0	Median	0.58621	0.72824	NaN	1	0	Median	1.0082	0.98897	NaN	1	0	Median	0.84794	0.91817	NaN	1	0	Median	337890000	169090000	168810000	49706000	29733000	19972000	60502000	31094000	29408000	146630000	70045000	76584000	81059000	38218000	42841000	40403	213	38021	247726;247727;247728;247729	332176;332177;332178;332179;332180;332181;332182	332180			7	
QAEELNEK	1	Unmodified	959.45599	0.45598972	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			8.6366	8.1765	2	0.0013022	5706	160511_QHF_FH_JSI9i_1	91.318	41.874			0.99129	0.97961	15.708	2	0	Median	1.322	1.0947	NaN	1	0	Median	0.74329	0.87663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1043100000	549220000	493900000	517800000	249520000	268280000	525310000	299700000	225620000	0	0	0	0	0	0	40404	1579	38022	247730;247731	332183;332184	332184			2	
QAEETYENIPGQSK	1	Unmodified	1592.7318	0.73183023	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	5.48	4				5	1				1	3	3	3	34.58	29.086	2;3	2.8288E-177	26019	160511_QHF_FH_JSI12i_1	314.48	290.65			0.93156	0.88355	16.86	10	1	Median	1.0742	0.86391	NaN	1	0	Median	0.65526	0.76214	15.194	3	1	Median	1.0019	0.97823	11.762	3	0	Median	0.84106	0.90364	8.7627	3	0	Plateau	1393400000	714940000	678480000	259600000	111380000	148220000	372590000	251870000	120720000	356170000	162440000	193740000	405060000	189250000	215810000	40405	127	38023	247732;247733;247734;247735;247736;247737;247738;247739;247740;247741	332185;332186;332187;332188;332189;332190;332191;332192;332193;332194;332195;332196;332197;332198;332199	332190			15	
QAEFFEPWVYSFSYELILQSTR	0	Unmodified	2739.3221	0.32206901	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.8	94.08	3	7.0975E-17	55320	160513_QHF_FH_JSI10Kac_6	124.86	111.93			0.98108	1.1774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98108	1.1774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93030000	50950000	42079000	0	0	0	93030000	50950000	42079000	0	0	0	0	0	0	40406	2094	38024	247742	332200	332200			1	
QAEIENK	1	Unmodified	830.4134	0.41339662	563	O75781	PALM	Paralemmin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.9829	5.7532	2	0.040781	3750	160511_QHF_FH_JSI10i_1	46.994	5.767			0.78874	0.85814	10.445	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71653	0.85633	NaN	1	0	Median	0.86824	0.85814	NaN	1	0	Median	0.68007	0.71537	NaN	1	0	Median	611180000	332150000	279030000	0	0	0	224780000	122030000	102750000	228530000	114940000	113600000	157860000	95191000	62674000	40407	563	38025	247743;247744;247745	332201	332201			1	
QAEIENPLEDPVTGDYVHK	1	Unmodified	2153.0277	0.027677899	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				66.416	65.404	3	0.0016196	58502	160511_QHF_FH_JSI9i_1	45.916	30.324			1.1047	0.924	NaN	1	1	Median	1.1047	0.924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66679000	34002000	32677000	66679000	34002000	32677000	0	0	0	0	0	0	0	0	0	40408	3926	38026	247746;247747	332202;332203	332203			2	
QAEILQESR	0	Unmodified	1072.5513	0.55128709	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.09	4	4	1			2	1			3	2	3	4	23.15	20.549	2	1.2843E-08	17738	160511_QHF_FH_JSI10i_1	169.41	87.127			0.96315	1.065	23.922	11	3	Median	1.3642	1.1412	9.7775	2	0	Median	0.91527	1.0984	6.1764	2	0	Median	1.0642	1.057	29.681	3	1	Plateau	1.044	1.1343	21.954	4	2	Median	3612300000	1808000000	1804300000	857530000	373620000	483900000	868880000	418430000	450460000	972780000	536500000	436290000	913150000	479500000	433650000	40409	505	38027	247748;247749;247750;247751;247752;247753;247754;247755;247756;247757;247758;247759	332204;332205;332206;332207;332208;332209;332210;332211;332212;332213;332214;332215;332216;332217;332218;332219	332209			16	
QAEIMDMK	1	Unmodified	964.43579	0.43578832	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.754	30.525	2	0.0077831	27257	160511_QHF_FH_JSI11i_1	68.371	43.477			1.7454	1.7079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7454	1.7079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83803000	37240000	46563000	0	0	0	0	0	0	83803000	37240000	46563000	0	0	0	40410	348	38028	247760	332220	332220			1	
QAEIWLHK	1	Unmodified	1023.5502	0.55016488	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	6.02		8	1						3	3	2	3	4	35.727	32.498	2;3	0.00066294	28186	160511_QHF_FH_JSI9i_2	69.598	42.468			0.89613	0.97055	38.405	11	0	Median	1.2976	1.0923	22.888	3	0	Median	0.96183	1.167	14.371	2	0	Median	0.84357	0.86649	5.829	3	0	Plateau	0.89613	0.97055	78.909	3	0	Median	566030000	297090000	268940000	83894000	34036000	49858000	170530000	101940000	68585000	224710000	109460000	115250000	86907000	51659000	35249000	40411	1568	38029	247761;247762;247763;247764;247765;247766;247767;247768;247769;247770;247771;247772	332221;332222;332223;332224;332225;332226;332227;332228;332229;332230	332223			10	
QAEIWLHKEAQK	2	Acetyl (K)	1521.794	0.79397698	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.124	42.399	3	1.0282E-05	22943	160513_QHF_FH_JSI11Kac_6	93.823	66.725			0.28198	0.27506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28198	0.27506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12106000	9002800	3103000	0	0	0	0	0	0	12106000	9002800	3103000	0	0	0	40412	1568	38030	247773	332231	332231	1582		1	
QAELAAQK	1	Unmodified	857.46068	0.46068117	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	9									2	2	2	3	9.1417	8.7768	2	0.0051549	6526	160511_QHF_FH_JSI10i_1	75.692	19.79			1.0055	0.93448	20.93	9	2	Median	1.1417	0.93126	0.48695	2	0	Median	0.94748	1.1074	9.1981	2	0	Median	0.9872	0.95185	33.572	2	0	Median	0.73197	0.75124	26.474	3	2	Median	1412300000	711990000	700330000	309080000	127030000	182040000	310460000	174910000	135540000	321330000	154270000	167060000	471450000	255770000	215680000	40413	5065	38031	247774;247775;247776;247777;247778;247779;247780;247781;247782	332232;332233;332234;332235	332234			4	
QAELAQWQK	1	Unmodified	1100.5615	0.56145784	5529	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.5	6	5					1			2	3	4	3	33.343	31.808	2	4.2055E-07	28409	160511_QHF_FH_JSI10i_1	147.19	106.92			0.90241	0.93851	83.776	11	8	Median	2.1474	1.8403	154.13	2	1	Median	0.71301	0.82918	26.523	3	3	Median	1.0278	0.99201	69.891	4	3	Median	1.8603	2.0043	127.05	2	1	Median	498420000	246300000	252120000	55211000	19651000	35560000	200160000	108840000	91325000	170580000	90630000	79948000	72466000	27177000	45289000	40414	5529	38032	247783;247784;247785;247786;247787;247788;247789;247790;247791;247792;247793;247794	332236;332237;332238;332239;332240;332241;332242;332243;332244;332245;332246;332247;332248;332249	332241			14	
QAELEAAR	0	Unmodified	886.45084	0.45084476	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.931	10.696	2	0.0069531	8473	160511_QHF_FH_JSI10i_1	70.256	41.107			0.90398	1.0651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90398	1.0651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68305000	38248000	30057000	0	0	0	68305000	38248000	30057000	0	0	0	0	0	0	40415	4282	38033	247795	332250	332250			1	
QAELEEGRPQHQEQLR	0	Unmodified	1946.9559	0.95585036	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.044	16.044	3	0.003348	13239	160511_QHF_FH_JSI11i_3	35.757	25.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40416	138	38034	247796	332251	332251			1	
QAELEEIYESSIR	0	Unmodified	1565.7573	0.7573167	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	67.452	66.682	2	1.3132E-16	58147	160511_QHF_FH_JSI11i_2	132.32	113.58			0.94332	0.94399	38.681	4	3	Median	1.1205	0.98854	NaN	1	1	Median	0.434	0.51819	NaN	1	1	Median	1.3105	1.3034	NaN	1	1	Median	0.79417	0.90144	NaN	1	0	Median	138890000	79415000	59476000	16584000	6951500	9632100	53942000	36726000	17216000	32290000	12767000	19524000	36075000	22970000	13105000	40417	1637	38035	247797;247798;247799;247800;247801	332252;332253;332254;332255;332256;332257	332257			6	
QAEMEGAVQSIQGELSK	1	Unmodified	1803.8673	0.86727785	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	68.534	67.966	2;3	1.2955E-52	61735	160511_QHF_FH_JSI11i_1	268.59	255.78			0.82987	0.86035	17.738	8	0	Median	0.93807	0.77145	18.343	2	0	Median	0.75528	0.89519	8.532	2	0	Median	1.0079	0.98118	26.552	2	0	Median	0.88187	0.90952	21.927	2	0	Median	864720000	452110000	412610000	219300000	114510000	104780000	282990000	152340000	130650000	197950000	103240000	94714000	164480000	82020000	82463000	40418	3085	38036	247802;247803;247804;247805;247806;247807;247808;247809	332258;332259;332260;332261;332262;332263;332264;332265;332266;332267;332268;332269;332270;332271;332272;332273;332274;332275	332260			18	
QAEMLDDLMEK	1	Unmodified	1321.5894	0.58938843	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	65.341	64.553	2	6.1607E-19	58422	160511_QHF_FH_JSI10i_1	168.3	144.27			1.0569	1.0225	35.818	7	3	Median	1.0756	0.89232	13.238	2	1	Median	0.63341	0.7565	50.533	2	1	Median	1.0569	1.0225	NaN	1	0	Median	1.3538	1.4361	22.996	2	1	Median	2341000000	1269100000	1071900000	672510000	322750000	349760000	543050000	356320000	186730000	520830000	243690000	277140000	604610000	346340000	258270000	40419	1835	38037	247810;247811;247812;247813;247814;247815;247816	332276;332277;332278;332279;332280;332281;332282;332283;332284;332285;332286;332287;332288;332289;332290;332291;332292;332293;332294	332286			19	
QAEPELDLR	0	Unmodified	1069.5404	0.54038805	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	1	3	41.289	37.85	2	9.6812E-09	33817	160511_QHF_FH_JSI11i_1	153.24	129.09			1.0231	1.0235	8.7318	6	0	Median	1.2201	0.98725	NaN	1	0	Median	0.9777	1.1274	14.413	2	0	Median	1.0551	1.0289	NaN	1	0	Median	0.9538	1.0261	4.4714	2	0	Median	1625800000	835940000	789910000	401870000	186070000	215800000	397800000	219850000	177950000	469610000	254230000	215380000	356570000	175790000	180790000	40420	1181	38038	247817;247818;247819;247820;247821;247822;247823	332295;332296;332297;332298;332299;332300;332301;332302;332303;332304	332296			10	
QAEPVQK	1	Unmodified	798.42357	0.42356738	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.7885	5.6835	2	0.019138	3507	160511_QHF_FH_JSI11i_1	61.561	44.634			0.9945	0.92275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9945	0.92275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68578000	36657000	31921000	0	0	0	0	0	0	68578000	36657000	31921000	0	0	0	40421	2907	38039	247824	332305	332305			1	
QAEPVVVLDPVSTHEPQTK	1	Unmodified	2073.0742	0.074234161	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.515	55.86	3	4.2329E-06	50294	160511_QHF_FH_JSI10i_1	85.737	82.349			0.95095	1.0039	9.151	4	0	Median	1.2937	1.0725	NaN	1	0	Median	0.90453	1.0522	NaN	1	0	Median	0.99975	0.95788	NaN	1	0	Median	0.86572	0.87972	NaN	1	0	Median	482720000	235740000	246980000	98741000	37145000	61597000	104750000	49832000	54914000	150240000	79857000	70380000	128990000	68906000	60089000	40422	8	38040	247825;247826;247827;247828	332306;332307;332308;332309;332310	332310			5	
QAEQLSAAGEGGDAGR	0	Unmodified	1515.6914	0.6913624	4968	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	17.316	16.834	2	1.2702E-16	14178	160511_QHF_FH_JSI10i_1	119.69	93.091			0.91477	0.84532	10.861	4	0	Median	0.99894	0.81313	NaN	1	0	Median	0.67255	0.80191	NaN	1	0	Median	1.042	1.0163	NaN	1	0	Median	0.83768	0.87879	NaN	1	0	Median	198630000	99392000	99240000	55088000	25597000	29491000	44467000	24168000	20298000	53360000	27141000	26219000	45717000	22486000	23231000	40423	4968	38041	247829;247830;247831;247832;247833	332311;332312;332313;332314;332315;332316;332317	332315			7	
QAEQLVFPLEK	1	Unmodified	1300.7027	0.70270235	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.227	67.614	2	0.0050205	61531	160511_QHF_FH_JSI12i_1	63.694	52.543			0.72999	0.75052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72999	0.75052	NaN	1	1	Median	31034000	19858000	11176000	0	0	0	0	0	0	0	0	0	31034000	19858000	11176000	40424	4472	38042	247834	332318	332318			1	
QAESASEAAK	1	Unmodified	990.4618	0.46180338	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.5	4	1		1	3	3				1	3	4	4	5.3195	0.92124	2	1.6952E-24	1862	160513_QHF_FH_JSI11Kac_3	179.51	155.54			0.91885	0.92973	16.635	12	0	Median	0.96733	0.79649	NaN	1	0	Median	0.77518	0.92246	21.169	3	0	Plateau	1.0845	1.0614	10.781	4	0	Median	1.0692	0.99305	14.225	4	0	Linear	6953500000	3606300000	3347200000	1513900000	768140000	745770000	1844300000	1024900000	819470000	1673200000	837210000	835980000	1922100000	976110000	945990000	40425	1741	38043	247835;247836;247837;247838;247839;247840;247841;247842;247843;247844;247845;247846	332319;332320;332321;332322;332323;332324;332325;332326;332327;332328;332329;332330;332331;332332;332333;332334;332335;332336;332337;332338;332339	332326			21	
QAESASEAAKK	2	Unmodified	1118.5568	0.5567664	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	1.67	0.471	2	4								1	2	2	1	4.8648	4.5473	2;3	1.4972E-07	2534	160511_QHF_FH_JSI10i_1	123.86	85.088			1.2672	1.3427	15.214	6	0	Median	1.5245	1.2866	NaN	1	0	Median	1.0236	1.206	21.219	2	0	Median	1.3453	1.3452	17.863	2	0	Median	1.3658	1.527	NaN	1	0	Median	520000000	210970000	309030000	93966000	35185000	58782000	133590000	56999000	76589000	221650000	94853000	126800000	70791000	23934000	46857000	40426	1741	38044	247847;247848;247849;247850;247851;247852	332340;332341;332342	332341			3	
QAEVANQETK	1	Unmodified	1116.5411	0.54111633	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	5.58	4			1	2	3				1	3	3	3	7.3876	2.883	2	4.2265E-14	4366	160511_QHF_FH_JSI12i_1	160.77	76.986			0.88503	0.96785	33.905	10	1	Median	1.2603	1.0272	NaN	1	0	Median	0.77061	0.91193	33.965	3	1	Plateau	1.2268	1.1796	18.41	3	0	Plateau	0.7822	0.83012	18.218	3	0	Median	2587500000	1252100000	1335500000	677040000	327820000	349220000	563850000	329220000	234630000	612360000	256890000	355470000	734270000	338120000	396150000	40427	825	38045	247853;247854;247855;247856;247857;247858;247859;247860;247861;247862	332343;332344;332345;332346;332347;332348;332349;332350;332351;332352;332353;332354;332355	332346			13	
QAEVANQETKEDLPAENGETK	2	Unmodified	2300.0768	0.076812936	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.46	26.878	3	1.3513E-07	23674	160511_QHF_FH_JSI11i_1	90.464	79.004			1.1846	1.1026	6.8809	4	0	Median	1.3392	1.0814	NaN	1	0	Median	0.84977	1.0109	NaN	1	0	Median	1.2052	1.1243	NaN	1	0	Median	1.1643	1.1909	NaN	1	0	Median	230960000	107920000	123040000	49710000	20106000	29604000	60858000	30974000	29884000	50411000	27506000	22905000	69979000	29331000	40648000	40428	825	38046	247863;247864;247865;247866	332356;332357;332358;332359;332360;332361;332362	332356			7	
QAEVANQETKEDLPAENGETKTEESPASDEAGEK	3	Unmodified	3630.6293	0.62928182	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	2	By MS/MS				1	0	1									1				34.222	32.967	4	0.02356	28914	160511_QHF_FH_JSI9i_1	21.638	17.933			0.76794	0.63994	NaN	1	1	Median	0.76794	0.63994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23720000	19370000	4349400	23720000	19370000	4349400	0	0	0	0	0	0	0	0	0	40429	825	38047	247867	332363	332363			1	
QAFAHVSK	1	Unmodified	886.4661	0.4661009	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	9.6696	9.7184	3	0.017104	7046	160511_QHF_FH_JSI12i_3	28.958	28.958			0.77227	0.75687	22.23	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67436	0.64678	NaN	1	0	Median	0.8844	0.88571	NaN	1	0	Median	644070000	399050000	245020000	0	0	0	0	0	0	310920000	191830000	119090000	333140000	207220000	125920000	40430	3797	38048	247868;247869	332364	332364			1	
QAFAPFGPIK	1	Unmodified	1074.5862	0.58621603	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.81	1	4	4					1	2	2	2	4	4	65.536	63.744	2	6.3053E-11	56078	160511_QHF_FH_JSI9i_2	145.63	109.75			0.96227	1.0218	16.48	10	2	Median	1.1982	0.99946	1.2044	2	0	Median	0.89204	1.0755	4.7359	2	0	Median	1.0381	1.0631	17.753	3	1	Plateau	0.92133	1.0358	18.773	3	1	Plateau	1635500000	881750000	753700000	312060000	137790000	174270000	339310000	208940000	130370000	612200000	331060000	281140000	371880000	203960000	167920000	40431	5315	38049	247870;247871;247872;247873;247874;247875;247876;247877;247878;247879;247880;247881	332365;332366;332367;332368;332369;332370;332371;332372;332373;332374;332375;332376;332377;332378;332379	332372			13	
QAFDDAIAELDTLNEDSYK	1	Unmodified	2156.975	0.97497363	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									4	3	2	3	94.444	94.031	2;3	1.7181E-82	85588	160511_QHF_FH_JSI12i_1	293.59	289.52			0.98927	0.93193	15.99	11	5	Median	1.0072	0.82329	9.7587	4	4	Median	0.80851	0.93766	1.855	2	0	Median	0.99245	0.95708	3.7659	2	0	Median	1.1107	1.1864	30.374	3	1	Plateau	885370000	477070000	408300000	206110000	104300000	101810000	255480000	138580000	116910000	167480000	100200000	67284000	256310000	134000000	122300000	40432	2224	38050	247882;247883;247884;247885;247886;247887;247888;247889;247890;247891;247892;247893	332380;332381;332382;332383;332384;332385;332386;332387;332388;332389;332390;332391;332392;332393;332394;332395;332396;332397;332398;332399;332400;332401;332402;332403;332404;332405;332406;332407;332408;332409;332410	332394			31	
QAFFLHTTYFTK	1	Unmodified	1502.7558	0.75580056	4414	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	3	3	4	3	71.638	66.04	2;3	1.1447E-24	35484	160513_QHF_FH_JSI11Kac_6	164.11	151.96			1.0495	0.97087	30.841	13	1	Median	1.2127	1.0353	7.7113	3	0	Plateau	0.99709	1.1925	24.5	3	0	Median	1.5118	1.4042	48.553	4	1	Linear	0.90846	0.96124	19.072	3	0	Median	2559400000	1311400000	1248000000	810360000	382440000	427920000	751850000	409930000	341910000	520180000	269270000	250910000	477000000	249770000	227230000	40433	4414	38051	247894;247895;247896;247897;247898;247899;247900;247901;247902;247903;247904;247905;247906	332411;332412;332413;332414;332415;332416;332417;332418;332419;332420;332421;332422;332423;332424;332425;332426;332427;332428;332429;332430	332415			20	
QAFHMEQLK	1	Unmodified	1130.5543	0.55426398	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	31.502	30.753	3	0.00011874	25987	160511_QHF_FH_JSI11i_2	70.908	65.595			0.98864	1.1232	37.568	5	1	Median	0.96047	0.80371	NaN	1	1	Median	0.63063	0.78554	NaN	1	0	Median	1.2361	1.2236	NaN	1	0	Median	1.3478	1.4889	39.853	2	0	Median	319950000	165700000	154250000	62448000	30906000	31542000	68030000	34650000	33380000	101300000	50380000	50916000	88172000	49765000	38407000	40434	3685	38052	247907;247908;247909;247910;247911	332431;332432;332433;332434	332433			4	
QAFITAQNHGYALDNTLPAGWK	1	Unmodified	2415.1971	0.19714326	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	76.207	75.612	2;3	1.2948E-58	65733	160511_QHF_FH_JSI12i_3	213.13	197.01			0.97136	0.94762	12.875	9	0	Median	1.0639	0.92154	NaN	1	0	Median	0.88413	1.0596	22.254	2	0	Median	1.0184	0.95089	7.0885	3	0	Median	0.80952	0.83893	10.455	3	0	Median	2660800000	1346700000	1314200000	186560000	95661000	90899000	344740000	177870000	166870000	1172900000	585290000	587640000	956610000	487850000	468760000	40435	1372	38053	247912;247913;247914;247915;247916;247917;247918;247919;247920	332435;332436;332437;332438;332439;332440;332441;332442;332443;332444;332445;332446;332447;332448;332449;332450;332451;332452;332453;332454;332455;332456;332457;332458;332459;332460;332461;332462	332459			28	
QAFPNTNR	0	Unmodified	946.46208	0.46207815	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.21	4	4	3				3	4		3	5	5	5	16.21	12.47	2	0.00024363	10730	160511_QHF_FH_JSI11i_2	116.88	96.185			1.0086	1.0492	14.121	18	0	Median	1.2351	1.0626	13.751	3	0	Median	0.88694	1.036	14.489	5	0	Median	1.0366	1.0312	17.178	5	0	Median	0.98138	1.0739	14.792	5	0	Median	8271200000	4192500000	4078700000	1237300000	562220000	675100000	2057900000	1091600000	966320000	2839000000	1448600000	1390400000	2137000000	1090200000	1046900000	40436	1284	38054	247921;247922;247923;247924;247925;247926;247927;247928;247929;247930;247931;247932;247933;247934;247935;247936;247937;247938	332463;332464;332465;332466;332467;332468;332469;332470;332471;332472;332473;332474;332475;332476;332477;332478;332479;332480;332481;332482;332483;332484;332485;332486;332487;332488	332477			26	
QAFSANQVPEK	1	Unmodified	1217.6041	0.60405094	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			27.548	26.758	2	3.8132E-05	23113	160511_QHF_FH_JSI9i_1	97.472	86.948			0.6577	0.64154	53.216	2	0	Median	1.1438	0.93465	NaN	1	0	Median	0.37817	0.44036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	188080000	102890000	85190000	104060000	37218000	66841000	84016000	65668000	18348000	0	0	0	0	0	0	40437	3073	38055	247939;247940	332489;332490	332490			1	
QAFTDVATGSLGQGLGAACGMAYTGK	1	Oxidation (M)	2547.1734	0.17337263	1322	P29401	TKT	Transketolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.928	74.437	3	1.2934E-17	67834	160511_QHF_FH_JSI12i_1	107.19	105.35			1.0658	1.0712	17.755	4	0	Median	1.2897	1.0521	NaN	1	0	Median	0.92364	1.0906	NaN	1	0	Median	0.8456	0.82997	NaN	1	0	Median	1.2298	1.2754	NaN	1	0	Median	298520000	149430000	149080000	34589000	12386000	22202000	83081000	46605000	36476000	91257000	52778000	38480000	89588000	37661000	51927000	40438	1322	38056	247941;247942;247943;247944	332491;332492;332493;332494;332495;332496	332494		971	5	
QAFTDVATGSLGQGLGAACGMAYTGK	1	Unmodified	2531.1785	0.17845801	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								2	3	3	2	83.999	83.449	2;3	3.0422E-58	76008	160511_QHF_FH_JSI11i_1	268.65	257.21			0.87448	0.96568	19.973	10	1	Median	1.1948	0.9849	1.593	2	0	Median	0.81611	0.95755	8.5698	3	0	Median	0.83459	0.80364	13.725	3	1	Median	1.1551	1.2574	8.3811	2	0	Median	2921500000	1603700000	1317800000	407580000	236380000	171200000	1271600000	646340000	625260000	1097800000	643710000	454100000	144500000	77262000	67237000	40439	1322	38056	247945;247946;247947;247948;247949;247950;247951;247952;247953;247954	332497;332498;332499;332500;332501;332502;332503;332504;332505;332506;332507;332508;332509;332510	332497			12	
QAFTPSSTMMEVFLQEK	1	Unmodified	1972.9274	0.92743527	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	100.5	100.43	2;3	0.00033032	86940	160511_QHF_FH_JSI12i_3	80.522	67.094			0.64847	0.60061	88.266	3	3	Median	0.64847	0.56502	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.61582	0.60061	NaN	1	1	Median	2.5877	2.6846	NaN	1	1	Median	64921000	28285000	36636000	19171000	13061000	6109600	0	0	0	5829400	2785600	3043800	39921000	12438000	27482000	40440	2505	38057	247955;247956;247957	332511;332512;332513	332513			3	
QAFYFALR	0	Unmodified	1014.5287	0.52870115	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			68.087	66.824	2	0.0059057	55828	160511_QHF_FH_JSI10i_3	73.975	55.939			0.74973	0.87168	17.903	3	1	Median	1.1187	0.91996	NaN	1	0	Median	0.63658	0.75795	19.771	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101230000	58327000	42899000	27658000	12401000	15257000	73567000	45926000	27642000	0	0	0	0	0	0	40441	4989	38058	247958;247959;247960	332514;332515;332516;332517	332514			4	
QAGAEALSQAVAR	0	Unmodified	1270.663	0.6629628	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.78	3	6					2			2	3	3	3	36.856	33.988	2	3.5738E-12	29832	160511_QHF_FH_JSI10i_2	117.25	82.027			0.95664	0.90544	13.3	9	3	Median	1.1108	0.93579	12.874	2	1	Median	0.80301	0.96616	26.547	2	1	Median	0.88259	0.85731	7.1577	3	0	Plateau	0.86244	0.92593	20.109	2	1	Median	609340000	347890000	261450000	153210000	77715000	75494000	212150000	130260000	81884000	218860000	125020000	93832000	25135000	14893000	10242000	40442	3860	38059	247961;247962;247963;247964;247965;247966;247967;247968;247969;247970;247971	332518;332519;332520;332521;332522;332523;332524;332525;332526;332527;332528;332529;332530;332531;332532	332532			15	
QAGEVTFADAHRPK	1	Unmodified	1525.7637	0.76373948	2377	Q13243	SRSF5	Serine/arginine-rich splicing factor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	3	1	21.105	20.57	2;3;4	1.4135E-05	17889	160511_QHF_FH_JSI9i_2	107.74	100.01			0.94001	0.99134	19.254	8	1	Median	1.3234	1.1096	36.433	2	1	Median	0.85833	1.0201	1.1429	2	0	Median	0.91401	0.87632	16.002	3	0	Median	0.96675	0.97117	NaN	1	0	Median	982480000	504940000	477540000	89574000	39148000	50426000	213080000	115520000	97556000	592280000	301680000	290600000	87552000	48599000	38953000	40443	2377	38060	247972;247973;247974;247975;247976;247977;247978;247979	332533;332534;332535;332536;332537;332538;332539;332540;332541;332542;332543;332544;332545;332546	332543			14	
QAGEVTYADAHK	1	Unmodified	1288.6048	0.60477922	2263;2378	Q08170;Q13247	SRSF4;SRSF6	Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.43	7	8	2				6			4	7	6	6	14.536	12.113	2;3	1.6444E-41	10251	160511_QHF_FH_JSI10i_2	199.7	173.31			1.0905	1.082	14.927	21	3	Median	1.2107	0.991	8.6893	4	0	Median	0.81041	0.98702	18.556	6	3	Median	1.0807	1.0906	8.9824	6	0	Median	1.1365	1.2448	7.2762	5	0	Median	2465600000	1182300000	1283300000	412260000	179610000	232650000	412400000	229400000	182990000	938780000	448660000	490120000	702200000	324640000	377560000	40444	2263;2378	38061	247980;247981;247982;247983;247984;247985;247986;247987;247988;247989;247990;247991;247992;247993;247994;247995;247996;247997;247998;247999;248000;248001;248002	332547;332548;332549;332550;332551;332552;332553;332554;332555;332556;332557;332558;332559;332560;332561;332562;332563;332564;332565;332566;332567;332568;332569;332570;332571;332572;332573;332574;332575;332576;332577;332578;332579;332580;332581;332582;332583;332584;332585	332585			38	
QAGEVTYADAHKER	1	Acetyl (K)	1615.759	0.75904803	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							3				1	2		27.954	19.448	2;3	0.006809	12531	160513_QHF_FH_JSI11Kac_4	67.022	43.036			0.67081	0.71617	117.99	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4077	1.6495	NaN	1	0	Median	0.31966	0.31095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16387000	10590000	5797000	0	0	0	5193400	1888000	3305400	11194000	8702000	2491600	0	0	0	40445	2378	38062	248003;248004;248005	332586;332587;332588	332588	2446		3	
QAGGFLGPPPPSGK	1	Unmodified	1308.6826	0.68263561	5417	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								2	2	2	4	41.195	40.395	2	1.0474E-09	36686	160511_QHF_FH_JSI12i_1	103.46	82.762			0.89364	0.88665	15.151	8	3	Median	1.1642	0.98053	13.842	2	1	Median	0.8001	0.94899	21.618	2	1	Median	0.86739	0.85267	5.1354	2	0	Median	0.73391	0.80099	19.838	2	1	Median	825950000	429380000	396570000	156480000	69773000	86702000	203210000	108270000	94942000	235800000	120890000	114900000	230460000	130440000	100020000	40446	5417	38063	248006;248007;248008;248009;248010;248011;248012;248013;248014;248015	332589;332590;332591;332592;332593;332594;332595;332596;332597;332598;332599;332600;332601;332602;332603;332604;332605;332606	332594			18	
QAGGHKDPEK	2	Acetyl (K)	1107.5309	0.530886	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		5.6121	-1.9874	2	0.0069034	1921	160513_QHF_FH_JSI11Kac_4	72.928	48.773			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1792400	1792400	0	0	0	0	0	0	0	1792400	1792400	0	0	0	0	40447	2712	38064	248016	332607	332607	2642		1	
QAGGIGK	1	Unmodified	629.34967	0.34967415	4917	Q9NQA3;C4AMC7;Q6VEQ5;A8K0Z3;A8MWX3	WASH6P;WASH3P;WASH2P;WASH1;WASH4P	WAS protein family homolog 6;Putative WAS protein family homolog 3;WAS protein family homolog 2;WAS protein family homolog 1;Putative WAS protein family homolog 4	yes	no	0	0	0	0		By MS/MS	By matching	By matching	15	0.632							1	3	1		2	2	1	6.8585	-1.6747	2	0.047909	1547	160513_QHF_FH_JSI10Kac_6	53.098	19.36			0.87281	0.94254	31.314	5	0	Median	NaN	NaN	NaN	0	0	Median	0.81835	0.96534	8.7321	2	0	Median	0.7332	0.72046	53.574	2	0	Median	0.87281	0.94254	NaN	1	0	Median	105550000	60352000	45194000	0	0	0	87761000	49825000	37936000	14458000	8818000	5639700	3327200	1708400	1618700	40448	4917	38065	248017;248018;248019;248020;248021	332608	332608			1	
QAGLEAAAK	1	Unmodified	857.46068	0.46068117	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.944	11.541	2	0.00070637	9135	160511_QHF_FH_JSI11i_1	88.177	51.782			0.94169	0.90333	10.284	4	0	Median	1.0885	0.86914	NaN	1	0	Median	0.67256	0.78125	NaN	1	0	Median	1.0054	0.98997	NaN	1	0	Median	0.88199	0.93887	NaN	1	0	Median	949130000	508090000	441050000	246960000	121680000	125280000	209150000	133830000	75323000	239670000	117720000	121960000	253350000	134870000	118480000	40449	2525	38066	248022;248023;248024;248025	332609;332610;332611;332612;332613	332609			5	
QAGLLTTDPR	0	Unmodified	1070.572	0.57202253	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	30.997	30.344	2	0.0005458	25732	160511_QHF_FH_JSI11i_2	87.149	56.537			0.82384	0.98055	45.15	5	4	Median	1.1569	0.98055	NaN	1	1	Median	0.57036	0.67933	55.648	2	1	Median	1.3213	1.3138	NaN	1	1	Median	0.52569	0.53295	NaN	1	1	Median	351750000	234340000	117410000	29549000	13750000	15800000	176490000	129260000	47236000	32069000	14252000	17817000	113640000	77086000	36553000	40450	2115	38067	248026;248027;248028;248029;248030;248031;248032	332614;332615;332616;332617;332618;332619;332620	332618			7	
QAGLSYIR	0	Unmodified	906.49232	0.49231565	1878	P56381;Q5VTU8	ATP5E;ATP5EP2	ATP synthase subunit epsilon, mitochondrial;ATP synthase subunit epsilon-like protein, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	6.59	2	4	1				2	2	2	2	5	4	2	34.555	29.689	2	0.00073722	26574	160511_QHF_FH_JSI10i_1	98.904	60.067			0.95073	1.018	12.158	13	0	Median	1.2051	1.0153	4.4146	2	0	Median	0.89304	1.0676	14.076	5	0	Median	0.95722	0.96806	8.1023	4	0	Median	0.84592	0.91893	14.484	2	0	Median	3446000000	1697200000	1748800000	583760000	268130000	315630000	896400000	510560000	385840000	1236500000	543750000	692750000	729330000	374730000	354590000	40451	1878	38068	248033;248034;248035;248036;248037;248038;248039;248040;248041;248042;248043;248044;248045	332621;332622;332623;332624;332625;332626;332627;332628;332629;332630;332631;332632;332633	332626			13	
QAGLVSK	1	Unmodified	701.40719	0.40718903	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.33	0.471	4	2								2	1	2	1	9.7079	9.3452	2	0.015056	7042	160511_QHF_FH_JSI10i_1	65.252	14.286			0.8234	0.79415	13.28	6	0	Median	0.90426	0.75337	2.5874	2	0	Median	0.73711	0.87253	NaN	1	0	Median	0.8392	0.83493	26.348	2	0	Median	0.77505	0.82196	NaN	1	0	Median	3755300000	1839300000	1916000000	1122500000	635260000	487190000	842090000	395680000	446410000	1059400000	469580000	589800000	731360000	338800000	392560000	40452	1341	38069	248046;248047;248048;248049;248050;248051	332634;332635;332636	332634			3	
QAGLYSISLPNK	1	Unmodified	1289.698	0.69795133	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	61.359	60.867	2	0.00022123	55067	160511_QHF_FH_JSI11i_1	94.692	72.051			0.92405	0.93055	11.985	3	3	Median	NaN	NaN	NaN	0	0	Median	0.78743	0.92132	NaN	1	1	Median	1.1634	1.1393	NaN	1	1	Median	0.92405	0.93055	NaN	1	1	Median	116390000	67185000	49204000	0	0	0	57738000	38424000	19314000	41103000	19139000	21963000	17548000	9621000	7927100	40453	3170	38070	248052;248053;248054;248055;248056	332637;332638;332639;332640;332641	332637			5	
QAGPAPAAATAASK	1	Unmodified	1210.6306	0.63060004	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	14.74	14.433	2	0.00027581	12038	160511_QHF_FH_JSI10i_1	83.137	64.159			1.1012	1.135	15.466	4	3	Median	NaN	NaN	NaN	0	0	Median	0.9168	1.0762	NaN	1	0	Median	1.0441	0.98676	NaN	1	1	Median	1.2433	1.3006	11.748	2	2	Median	188250000	91250000	96997000	0	0	0	42593000	21862000	20731000	49256000	26395000	22862000	96399000	42993000	53405000	40454	4413	38071	248057;248058;248059;248060	332642;332643;332644;332645	332645			4	
QAGPASVPLR	0	Unmodified	994.55598	0.55597854	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	28.077	27.39	2	2.4172E-06	23005	160511_QHF_FH_JSI11i_2	111.46	72.493			0.90684	0.91811	7.9364	6	1	Median	1.1722	0.97033	9.4334	2	0	Median	0.71885	0.87057	9.1296	2	0	Median	0.90684	0.90451	4.6351	2	1	Median	NaN	NaN	NaN	0	0	Median	597870000	308130000	289740000	145410000	71153000	74257000	161080000	89223000	71856000	291380000	147750000	143630000	0	0	0	40455	1344	38072	248061;248062;248063;248064;248065;248066;248067	332646;332647;332648;332649;332650;332651;332652;332653;332654;332655	332653			10	
QAGPASVPLRTEEEFK	1	Unmodified	1757.8948	0.89481323	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.87	5.52		5	6					4		3	3	5	4	49.581	46.193	2;3	2.7068E-05	39651	160511_QHF_FH_JSI11i_2	91.616	85.179			0.99021	0.99391	5.9324	15	0	Median	1.1768	0.99391	6.3931	3	0	Plateau	0.81737	1.0218	6.6683	3	0	Median	1.045	1.0228	4.6052	5	0	Median	0.96101	0.90938	6.4558	4	0	Linear	4913100000	2392700000	2520400000	147580000	72026000	75556000	154780000	95508000	59275000	2910600000	1372300000	1538200000	1700200000	852840000	847340000	40456	1344	38073	248068;248069;248070;248071;248072;248073;248074;248075;248076;248077;248078;248079;248080;248081;248082	332656;332657;332658;332659;332660;332661;332662;332663;332664;332665;332666;332667;332668;332669;332670;332671	332663			16	
QAGPASVPLRTEEEFKK	2	Unmodified	1885.9898	0.98977625	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.63		7	7						4	4	5	5	4	42.801	40.103	3;4	1.4167E-06	35191	160511_QHF_FH_JSI11i_3	103.01	82.272			0.96783	0.99543	9.6803	18	0	Median	1.1672	0.9827	7.7744	4	0	Median	0.90139	1.0386	5.7489	5	0	Median	1.0958	1.1057	11.103	5	0	Median	0.78242	0.80892	11.22	4	0	Linear	9107300000	4608400000	4498900000	1831700000	884100000	947610000	3382600000	1688800000	1693800000	3415100000	1784600000	1630500000	477960000	250970000	226990000	40457	1344	38074	248083;248084;248085;248086;248087;248088;248089;248090;248091;248092;248093;248094;248095;248096;248097;248098;248099;248100	332672;332673;332674;332675;332676;332677;332678;332679;332680;332681;332682;332683;332684;332685;332686;332687;332688;332689;332690;332691;332692;332693;332694;332695;332696;332697;332698;332699;332700;332701;332702;332703;332704;332705;332706;332707	332675			33	
QAGPASVPLRTEEEFKK	2	Acetyl (K)	1928.0003	0.0003409361	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	2		By matching	By MS/MS		15	0								2			1	1		62.54	51.744	3	0.048076	28188	160513_QHF_FH_JSI11Kac_5	41.554	31.897			0.50765	0.55051	95.525	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91456	1.0817	NaN	1	0	Median	0.28178	0.28017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20987000	15519000	5468000	0	0	0	3584900	1789200	1795700	17402000	13730000	3672300	0	0	0	40458	1344	38074	248101;248102	332708	332708			1	
QAGVAIGR	0	Unmodified	770.43989	0.43988615	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		14.039	13.569	2	0.050024	10688	160511_QHF_FH_JSI11i_2	46.021	17.767			1.1588	1.0882	1.4586	2	1	Median	1.262	1.0994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0641	1.077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	265080000	126460000	138620000	98244000	42568000	55675000	0	0	0	166840000	83894000	82943000	0	0	0	40459	3246	38075	248103;248104	332709;332710	332710			2	
QAGVFEPTIVK	1	Unmodified	1187.655	0.65502388	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.91	4	4	5			2	3	3		4	5	6	6	57.615	53.169	2	7.469E-13	46761	160511_QHF_FH_JSI10i_2	162.34	144.71			0.96609	0.93832	27.476	21	3	Median	1.0848	0.91424	4.3437	4	0	Median	0.80574	0.92599	12.097	5	0	Median	0.94691	0.94107	47.158	6	2	Median	1.0086	1.0392	9.7921	6	1	Median	6817900000	3624300000	3193600000	1247000000	589190000	657790000	1631300000	945010000	686320000	1961700000	999010000	962660000	1977900000	1091100000	886850000	40460	1132	38076	248105;248106;248107;248108;248109;248110;248111;248112;248113;248114;248115;248116;248117;248118;248119;248120;248121;248122;248123;248124;248125	332711;332712;332713;332714;332715;332716;332717;332718;332719;332720;332721;332722;332723;332724;332725;332726;332727;332728;332729;332730;332731;332732;332733;332734;332735;332736;332737;332738;332739;332740;332741;332742;332743;332744;332745;332746;332747;332748;332749;332750	332749			40	
QAGVIYLK	1	Unmodified	890.52255	0.52255314	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.78	5	5					3	1		3	4	3	4	40.928	37.262	2	0.00037414	21183	160513_QHF_FH_JSI10Kac_4	114.78	70.172			1.0355	1.021	29.184	13	7	Median	1.1419	0.9475	11.166	2	2	Median	0.84551	1.0067	41.036	4	3	Median	0.60719	0.60968	38.517	3	0	Plateau	0.9963	1.0887	19.918	4	2	Median	1902600000	1033300000	869300000	296570000	159730000	136840000	727800000	412960000	314840000	589770000	296840000	292930000	288510000	163810000	124690000	40461	686	38077	248126;248127;248128;248129;248130;248131;248132;248133;248134;248135;248136;248137;248138;248139	332751;332752;332753;332754;332755;332756;332757;332758;332759;332760;332761;332762;332763;332764;332765	332755			15	
QAHFEEEEEEEEEG	0	Unmodified	1719.6384	0.63838335	702	O95544	NADK	NAD kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.296	21.793	2	0.024033	19127	160511_QHF_FH_JSI12i_1	43.084	43.084			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40462	702	38078	248140	332766	332766			1	
QAHLCVLASNCDEPMYVK	1	Unmodified	2133.9646	0.96456583	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.949	56.017	3	1.1735E-05	48089	160511_QHF_FH_JSI12i_2	91.457	66.919			0.63269	0.65756	3.5822	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63237	0.64111	NaN	1	1	Median	0.633	0.67443	NaN	1	1	Median	45613000	31850000	13763000	0	0	0	0	0	0	28271000	20062000	8208500	17343000	11788000	5554800	40463	1258	38079	248141;248142	332767;332768	332767			2	
QAHLTNQYMQR	0	Oxidation (M)	1404.6568	0.65683157	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.46		7	16							6	9	5	3	15.839	15.243	2;3	6.4959E-06	14299	160511_QHF_FH_JSI10i_3	101.3	97.418			1.1346	1.0957	38.024	16	6	Median	2.2009	1.8329	33.381	4	1	Median	0.92616	1.0974	43.005	7	4	Median	1.1096	1.0195	21.782	3	1	Median	1.0462	1.0497	12.538	2	0	Median	722260000	337710000	384560000	132410000	54916000	77490000	337010000	166640000	170370000	137840000	61039000	76798000	115010000	55115000	59900000	40464	1009	38080	248143;248144;248145;248146;248147;248148;248149;248150;248151;248152;248153;248154;248155;248156;248157;248158;248159;248160;248161;248162;248163;248164;248165	332769;332770;332771;332772;332773;332774;332775;332776;332777;332778;332779;332780;332781;332782;332783;332784;332785;332786;332787;332788;332789;332790;332791;332792;332793;332794	332778		599	26	
QAHLTNQYMQR	0	Unmodified	1388.6619	0.66191694	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.9		9	6						5	5	7	6	2	20.393	17.618	2;3	9.5627E-39	14298	160511_QHF_FH_JSI10i_3	173.71	157.82			0.97861	1.0442	34.09	18	2	Median	1.2383	1.0626	13.47	5	0	Median	0.91759	1.1176	8.5327	6	0	Median	0.79201	0.74355	47.975	5	2	Median	0.92855	1.0105	22.442	2	0	Median	1883300000	939510000	943740000	520070000	229620000	290440000	930810000	466860000	463950000	384400000	211920000	172490000	47972000	31113000	16859000	40465	1009	38080	248166;248167;248168;248169;248170;248171;248172;248173;248174;248175;248176;248177;248178;248179;248180;248181;248182;248183;248184;248185	332795;332796;332797;332798;332799;332800;332801;332802;332803;332804;332805;332806;332807;332808;332809;332810;332811;332812;332813;332814;332815;332816;332817;332818;332819;332820;332821;332822;332823;332824;332825;332826;332827;332828;332829;332830;332831	332802			37	
QAHTMDPQLR	0	Unmodified	1195.5768	0.57679033	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.94		8	5					2	3	3	4	6	5	16.859	14.183	2;3	1.0078E-07	11976	160511_QHF_FH_JSI10i_2	122.28	89.671			1.0331	1.1542	15.641	18	1	Median	1.3977	1.1656	1.3761	3	1	Plateau	0.93866	1.1448	10.005	4	0	Median	1.0074	0.97928	18.65	6	0	Median	1.0595	1.1552	22.156	5	0	Median	3973500000	1946000000	2027500000	879470000	383380000	496090000	710670000	340610000	370070000	1541500000	795430000	746050000	841890000	426560000	415330000	40466	1650	38081	248186;248187;248188;248189;248190;248191;248192;248193;248194;248195;248196;248197;248198;248199;248200;248201;248202;248203	332832;332833;332834;332835;332836;332837;332838;332839;332840;332841;332842;332843;332844;332845;332846;332847;332848;332849;332850;332851;332852;332853	332848			21	
QAHTMDPQLR	0	Oxidation (M)	1211.5717	0.57170495	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.84		15						3		4	5	5	4	11.258	9.198	2;3	3.5353E-06	5795	160511_QHF_FH_JSI12i_2	102.53	83.431			0.76617	0.85665	35.587	16	3	Median	0.91296	0.78256	40.332	3	2	Median	0.70349	0.82038	23.471	5	0	Median	0.86052	0.86021	59.42	4	1	Median	0.82099	0.92089	26.052	4	0	Median	1006100000	527480000	478650000	154650000	75709000	78941000	315930000	173820000	142110000	328150000	171400000	156740000	207410000	106550000	100860000	40467	1650	38081	248204;248205;248206;248207;248208;248209;248210;248211;248212;248213;248214;248215;248216;248217;248218;248219;248220;248221	332854;332855;332856;332857;332858;332859;332860;332861;332862;332863;332864;332865;332866;332867;332868;332869	332857		1314	16	
QAIELSPDNQYVK	1	Unmodified	1503.7569	0.75692277	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.445	50.772	2	1.0317E-40	45682	160511_QHF_FH_JSI10i_1	199.19	146.06			0.69357	0.82673	15.477	4	2	Linear	0.81744	0.68741	NaN	1	0	Median	0.6388	0.74434	NaN	1	0	Median	0.97129	0.94021	NaN	1	1	Median	0.89992	0.91824	NaN	1	1	Median	277490000	154920000	122570000	64188000	40424000	23764000	68856000	44140000	24716000	60824000	30749000	30076000	83622000	39607000	44015000	40468	213	38082	248222;248223;248224;248225	332870;332871;332872;332873	332872			4	
QAIGIALETR	0	Unmodified	1070.6084	0.60840804	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.51	1	4					1	4		2	2	3	3	52.983	47.207	2	8.9352E-06	23948	160513_QHF_FH_JSI10Kac_5	107.79	58.073			0.93477	1.0268	18.309	10	0	Median	1.349	1.1445	12.392	2	0	Median	0.82313	0.98529	3.3375	2	0	Median	0.87928	0.88955	17.695	3	0	Median	0.99377	1.1029	26.444	3	0	Median	593200000	309630000	283570000	98546000	43412000	55134000	127380000	63638000	63741000	229080000	127510000	101570000	138190000	75074000	63120000	40469	4272	38083	248226;248227;248228;248229;248230;248231;248232;248233;248234;248235	332874;332875;332876;332877;332878;332879;332880;332881;332882;332883	332882			10	
QAIIQQWLEGTLSESTHK	1	Unmodified	2068.0589	0.058918447	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		94.055	94.055	3	0.00047963	83781	160511_QHF_FH_JSI11i_3	61.52	51.239			0.50765	0.47143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50765	0.47143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16291000	11546000	4744900	0	0	0	0	0	0	16291000	11546000	4744900	0	0	0	40470	2572	38084	248236	332884	332884			1	
QAILAAQR	0	Unmodified	869.5083	0.50830006	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.13		4	1				2	2		1	2	2	4	20.832	17.136	2	0.00019938	14943	160511_QHF_FH_JSI10i_2	120.65	65.204			0.93101	0.98908	8.8324	8	0	Median	1.0238	0.8766	NaN	1	0	Median	0.81603	0.99987	0.50991	2	0	Median	0.95461	0.94417	5.5471	2	0	Median	0.92128	1.0315	12.816	3	0	Plateau	1522900000	804500000	718370000	298790000	127090000	171710000	290400000	173680000	116720000	539650000	296330000	243320000	394020000	207410000	186620000	40471	455	38085	248237;248238;248239;248240;248241;248242;248243;248244;248245	332885;332886;332887;332888;332889;332890;332891;332892;332893;332894	332894			10	
QAILGEHPSSFR	0	Unmodified	1340.6837	0.68369824	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	33.042	32.996	3	0.01375	28672	160511_QHF_FH_JSI11i_3	53.001	37.462			0.83713	0.81934	28.203	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0773	1.0002	NaN	1	0	Median	0.65048	0.67121	NaN	1	1	Median	188100000	105860000	82240000	0	0	0	0	0	0	88942000	49621000	39321000	99158000	56239000	42919000	40472	3788	38086	248246;248247	332895;332896	332895			1	
QAIPIGLQNR	0	Unmodified	1108.6353	0.63529149	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		55.284	44.461	2	0.020957	24575	160513_QHF_FH_JSI11Kac_5	47.082	2.0004			1.208	1.192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.208	1.192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1895600	938630	956990	0	0	0	0	0	0	1895600	938630	956990	0	0	0	40473	4449	38087	248248	332897	332897			1	
QAIPLDENEGIYVQDVK	1	Unmodified	1929.9684	0.96837211	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	69.4	68.931	2;3	1.2596E-07	61428	160511_QHF_FH_JSI9i_1	99.531	82.998			1.4136	1.5355	10.411	4	1	Median	NaN	NaN	NaN	0	0	Median	1.415	1.6637	NaN	1	0	Median	1.3803	1.3147	NaN	1	0	Median	1.4837	1.5355	5.8169	2	1	Median	184290000	82140000	102150000	0	0	0	56267000	19899000	36369000	39481000	22049000	17432000	88541000	40192000	48350000	40474	2573	38088	248249;248250;248251;248252;248253;248254	332898;332899;332900;332901;332902;332903	332903			6	
QAITQVVVSR	0	Unmodified	1099.635	0.63495714	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.89	6.36	4	4				3	3	4	1	4	5	5	5	40.505	34.71	2	2.0148E-17	20643	160513_QHF_FH_JSI11Kac_4	166.97	132.16			0.97071	0.99616	9.7047	18	1	Median	1.1231	0.93298	5.719	3	0	Median	0.80975	0.97128	8.6138	5	1	Median	1.021	0.9942	11.952	5	0	Median	0.99965	1.0759	9.1313	5	0	Median	2216900000	1117900000	1099000000	409520000	191850000	217670000	607040000	334160000	272880000	723030000	357420000	365610000	477270000	234430000	242840000	40475	4806	38089	248255;248256;248257;248258;248259;248260;248261;248262;248263;248264;248265;248266;248267;248268;248269;248270;248271;248272;248273	332904;332905;332906;332907;332908;332909;332910;332911;332912;332913;332914;332915;332916;332917;332918;332919;332920;332921;332922;332923;332924;332925;332926;332927;332928;332929;332930;332931	332915			28	
QAIVDKVPSVSSSALVSSLHLLK	2	Unmodified	2377.3581	0.35806058	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				93.788	92.72	4	0.0026923	75867	160511_QHF_FH_JSI9i_3	37.169	33.436			0.39298	0.33988	NaN	1	0	Median	0.39298	0.33988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5634400	3642400	1992000	5634400	3642400	1992000	0	0	0	0	0	0	0	0	0	40476	5708	38090	248274	332932	332932			1	
QAIVNASR	0	Unmodified	857.47191	0.47191456	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	11.018	10.533	2	0.0024882	8118	160511_QHF_FH_JSI12i_2	79.713	52.916			1.2096	1.1665	5.8181	3	1	Plateau	1.2949	1.1055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2096	1.2253	NaN	1	0	Median	0.99332	1.1104	NaN	1	0	Median	497640000	252680000	244960000	155030000	74204000	80830000	0	0	0	177100000	87372000	89732000	165500000	91106000	74394000	40477	479	38091	248275;248276;248277;248278	332933;332934;332935;332936;332937;332938	332933			6	
QAKEMDEEDK	2	Acetyl (K)	1263.5289	0.52889667	5533	Q9Y2S6	TMA7	Translation machinery-associated protein 7	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	17.583	10.547	2	0.017305	6310	160513_QHF_FH_JSI12Kac_2	53.751	44.163			0.9186	0.92256	22.126	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1341	1.0788	NaN	1	0	Median	0.74403	0.78895	NaN	1	0	Median	11540000	5874200	5666100	0	0	0	0	0	0	4955700	2940600	2015100	6584600	2933600	3651000	40478	5533	38092	248279;248280	332939	332939	3472		1	
QAKVLENAEGAR	1	Acetyl (K)	1326.6892	0.68917755	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						1	1				1	1		35.883	26.855	2	0.015262	16367	160513_QHF_FH_JSI11Kac_4	51.927	25.412			0.39191	0.38546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39191	0.38546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4310200	2318400	1991800	0	0	0	1367000	0	1367000	2943200	2318400	624840	0	0	0	40479	1480	38093	248281;248282	332940;332941	332940	1479		2	
QALAHGLK	1	Unmodified	836.48684	0.48683634	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	10.678	10.364	2;3	0.00056048	7951	160511_QHF_FH_JSI11i_3	104.21	38.946			0.85915	0.88788	25.578	8	1	Median	1.0427	0.87566	34.88	2	0	Median	0.92187	1.1097	25.686	2	1	Median	0.85915	0.84762	0.7141	2	0	Median	0.97286	1.0321	41.218	2	0	Median	1567800000	417140000	1150700000	102260000	43875000	58382000	131350000	57987000	73360000	511520000	156210000	355310000	822690000	159070000	663620000	40480	4315	38094	248283;248284;248285;248286;248287;248288;248289;248290;248291;248292	332942;332943;332944;332945;332946;332947;332948;332949	332942			8	
QALAWLLWR	0	Unmodified	1155.6553	0.65529865	5452	Q9UNY4	TTF2	Transcription termination factor 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.746	83.025	2	0.00012265	46942	160513_QHF_FH_JSI10Kac_6	109.36	86.576			0.86533	1.0271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86533	1.0271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163670000	90096000	73572000	0	0	0	163670000	90096000	73572000	0	0	0	0	0	0	40481	5452	38095	248293	332950	332950			1	
QALAYLEQSYK	1	Unmodified	1312.6663	0.66631685	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5	5.79	1	2						1			2	2		55.984	52.847	2	8.1557E-06	45601	160511_QHF_FH_JSI11i_2	112.36	83.63			0.80053	0.9684	31.942	4	3	Median	NaN	NaN	NaN	0	0	Median	0.80053	0.9684	24.409	2	1	Median	0.91741	0.9197	49.381	2	2	Median	NaN	NaN	NaN	0	0	Median	371330000	218650000	152670000	0	0	0	142120000	86561000	55563000	229200000	132090000	97110000	0	0	0	40482	3503	38096	248294;248295;248296;248297	332951;332952;332953;332954	332952			4	
QALEDLEK	1	Unmodified	944.48148	0.48147619	2258;4625	Q9H0B6;Q07866	KLC2;KLC1	Kinesin light chain 2;Kinesin light chain 1	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	28.536	27.856	2	0.0013515	24700	160511_QHF_FH_JSI11i_1	90.657	38.921			1.0707	1.0988	14.458	3	1	Median	1.5813	1.2969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0199	0.97233	NaN	1	0	Median	1.0707	1.0988	NaN	1	1	Median	289430000	129840000	159590000	80758000	29988000	50770000	0	0	0	108070000	58480000	49594000	100600000	41373000	59227000	40483	4625;2258	38097	248298;248299;248300;248301	332955;332956;332957;332958	332955			4	
QALEGLGDLK	1	Unmodified	1042.5659	0.56587452	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.29	49.612	2	8.5641E-15	44825	160511_QHF_FH_JSI11i_1	167.67	94.413			0.88597	0.89184	4.1185	4	1	Median	1.0944	0.90848	NaN	1	0	Median	0.72349	0.84405	NaN	1	0	Median	0.88856	0.8755	NaN	1	0	Median	0.88339	0.92639	NaN	1	1	Median	1408200000	755010000	653210000	360870000	155770000	205100000	343590000	203960000	139630000	400820000	232590000	168230000	302950000	162700000	140250000	40484	1012;1666	38098	248302;248303;248304;248305	332959;332960;332961;332962;332963;332964;332965	332960			7	
QALEKFDESK	2	Acetyl (K)	1235.6034	0.60338224	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		46.834	37.488	2	0.0017177	20932	160513_QHF_FH_JSI11Kac_3	85.355	37.752			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1565000	1565000	0	0	0	0	0	0	0	1565000	1565000	0	0	0	0	40485	4332	38099	248306	332966	332966	3136		1	
QALEQYEEVK	1	Unmodified	1235.6034	0.60338224	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	32.174	31.826	2	1.2044E-05	28433	160511_QHF_FH_JSI11i_1	142.83	73.229			1.0281	1.0824	15.263	4	4	Median	NaN	NaN	NaN	0	0	Median	0.9636	1.1007	NaN	1	1	Median	1.2086	1.1728	13.725	2	2	Median	0.8723	0.89076	NaN	1	1	Median	338400000	170410000	168000000	0	0	0	118650000	59560000	59086000	151840000	76573000	75264000	67919000	34273000	33646000	40486	5289	38100	248307;248308;248309;248310	332967;332968;332969;332970	332967			4	
QALETVNDYNPLMK	1	Unmodified	1634.7974	0.79740737	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.437	65.836	2;3	2.0592E-81	60026	160511_QHF_FH_JSI12i_1	294.4	275.45			0.92327	0.89182	14.431	8	1	Median	1.0374	0.84118	11.101	2	0	Median	0.74946	0.88484	11.052	2	0	Median	0.95912	0.93566	11.603	2	1	Median	1.0024	1.038	24.298	2	0	Median	696870000	353820000	343060000	164420000	79279000	85137000	179310000	99124000	80186000	182360000	93872000	88491000	170790000	81543000	89243000	40487	2517	38101	248311;248312;248313;248314;248315;248316;248317;248318	332971;332972;332973;332974;332975;332976;332977;332978;332979;332980;332981;332982;332983;332984;332985	332977			15	
QALGELQAR	0	Unmodified	984.53524	0.53524309	3655	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		25.192	24.84	2	0.0085785	20725	160511_QHF_FH_JSI11i_2	52.786	16.085			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40488	3655	38102	248319	332986	332986			1	
QALHSGQNQLK	1	Unmodified	1222.6418	0.64183343	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	1	3	5	8.4896	8.2021	2;3	3.4928E-59	5532	160511_QHF_FH_JSI12i_3	225.67	192.29			1.076	1.0504	20.499	10	1	Median	1.2751	1.0787	10.895	2	0	Median	0.71675	0.90325	NaN	1	0	Median	1.1224	1.1322	18.938	3	0	Median	0.95949	1.0158	27.666	4	1	Median	1595100000	709910000	885200000	174050000	71942000	102110000	95990000	56405000	39585000	369580000	145320000	224260000	955490000	436250000	519240000	40489	1837	38103	248320;248321;248322;248323;248324;248325;248326;248327;248328;248329;248330	332987;332988;332989;332990;332991;332992;332993;332994;332995;332996;332997;332998;332999;333000	332998			13	
QALIDMNTLFTLLK	1	Unmodified	1619.8957	0.89566485	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	1	1	1	3	101.71	99.267	2	3.4401E-52	88533	160511_QHF_FH_JSI12i_2	188.91	152.57			0.97179	1.055	28.625	4	3	Median	1.2986	1.1481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0199	1.0543	NaN	1	1	Median	0.73469	0.80618	38.144	2	1	Median	230150000	116970000	113180000	30840000	10652000	20188000	0	0	0	92685000	46856000	45829000	106620000	59459000	47165000	40490	464	38104	248331;248332;248333;248334;248335;248336	333001;333002;333003;333004;333005;333006	333002			5	
QALLGDSGSQNWSTGTTDK	1	Unmodified	1964.9076	0.90756276	370	O43752	STX6	Syntaxin-6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	49.673	49.13	2	9.4753E-24	44649	160511_QHF_FH_JSI12i_1	138.87	109.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40491	370	38105	248337;248338	333007;333008	333007			2	
QALLQYK	1	Unmodified	862.49125	0.49125301	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.36	3	4					1	3		1	3	3	4	35.117	31.074	2	0.0027494	26226	160511_QHF_FH_JSI12i_2	108.98	66.068			0.90887	0.91842	20.093	11	0	Median	0.92416	0.79271	NaN	1	0	Median	0.76203	0.90455	6.3937	3	0	Median	1.0889	1.0652	35.828	3	0	Median	0.93409	1.0403	12.587	4	0	Median	3145600000	1746100000	1399500000	486760000	251790000	234960000	916060000	590110000	325950000	1014000000	510650000	503310000	728870000	393590000	335280000	40492	2193	38106	248339;248340;248341;248342;248343;248344;248345;248346;248347;248348;248349	333009;333010;333011;333012;333013;333014;333015;333016;333017;333018;333019;333020;333021;333022;333023	333011			15	
QALLQYKK	2	Unmodified	990.58622	0.58621603	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	1	2	3	24.018	21.305	2;3	0.0016582	17125	160511_QHF_FH_JSI12i_3	117.93	89.422			0.081539	0.078445	54.394	8	8	Median	0.069501	0.055333	26.057	2	2	Median	0.092202	0.10585	NaN	1	1	Median	0.064049	0.061403	33.284	2	2	Median	0.09926	0.09995	62.588	3	3	Median	12941000000	12018000000	922720000	3087700000	2855900000	231820000	1827600000	1693900000	133750000	1479900000	1380600000	99313000	6545300000	6087500000	457840000	40493	2193	38107	248350;248351;248352;248353;248354;248355;248356;248357	333024;333025;333026;333027;333028;333029;333030;333031	333030			8	
QALLQYKK	2	Acetyl (K)	1032.5968	0.59678072	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		48.538	37.994	2	0.0044412	21284	160513_QHF_FH_JSI11Kac_5	88.942	63.206			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2720700	2720700	0	0	0	0	0	0	0	2720700	2720700	0	0	0	0	40494	2193	38107	248358	333032	333032	2311		1	
QALMPTLEALYR	0	Unmodified	1404.7435	0.74352131	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.566	84.876	2	0.00026401	73422	160511_QHF_FH_JSI12i_2	76.465	65.713			0.89565	1.0738	14.24	4	2	Linear	1.5958	1.3993	NaN	1	1	Median	0.83345	1.0137	NaN	1	0	Median	1.283	1.3358	NaN	1	1	Median	1.0895	1.2222	NaN	1	0	Median	120850000	59221000	61629000	17769000	6252400	11517000	36198000	21207000	14991000	36671000	18146000	18524000	30212000	13615000	16597000	40495	2285;3886	38108	248359;248360;248361;248362	333033;333034;333035;333036;333037	333034			5	
QALNLPDVFGLVVLPLELK	1	Unmodified	2077.2187	0.21871355	5597	Q9Y3I1	FBXO7	F-box only protein 7	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				103.76	103.69	3	0.0033243	91515	160511_QHF_FH_JSI9i_2	46.702	36.945			1.37	1.1466	NaN	1	1	Median	1.37	1.1466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8029700	2475400	5554400	8029700	2475400	5554400	0	0	0	0	0	0	0	0	0	40496	5597	38109	248363	333038	333038			1	
QALPCVAESPTVHVEVHQR	0	Unmodified	2156.0797	0.079670665	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48	47.84	3;4	7.5631E-06	42398	160511_QHF_FH_JSI11i_3	81.723	72.44			1.1709	1.4203	22.942	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0093	0.96315	NaN	1	0	Median	1.3692	1.4327	1.2244	2	0	Median	153370000	67536000	85839000	0	0	0	0	0	0	82253000	39128000	43125000	71122000	28408000	42714000	40497	2692	38110	248364;248365;248366	333039;333040;333041	333040			3	
QALPQVR	0	Unmodified	810.47119	0.47118627	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			22.335	22.059	2	0.025835	19233	160511_QHF_FH_JSI10i_1	57.102	3.3927			1.5717	1.8208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5717	1.8208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100890000	30081000	70808000	0	0	0	100890000	30081000	70808000	0	0	0	0	0	0	40498	4320	38111	248367	333042	333042			1	
QALQDLLSEYMGNAGR	0	Unmodified	1764.8465	0.84648283	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2								1	3	3	98.173	97.977	2;3	8.735E-28	84678	160511_QHF_FH_JSI12i_3	150.69	132.88			0.81342	0.85462	34.428	6	2	Median	NaN	NaN	NaN	0	0	Median	0.86808	1.0887	NaN	1	0	Median	1.0454	0.98885	34.357	3	1	Plateau	0.65187	0.69509	47.009	2	1	Median	79540000	42288000	37252000	0	0	0	11233000	5865600	5367200	50806000	26229000	24576000	17501000	10193000	7308400	40499	1421	38112	248368;248369;248370;248371;248372;248373;248374	333043;333044;333045;333046;333047;333048;333049;333050	333050			8	
QALQDLLSEYMGNAGRK	1	Unmodified	1892.9414	0.94144585	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							3	1	1		88.648	88.017	3	7.2374E-07	78522	160511_QHF_FH_JSI11i_3	117.07	103.84			0.93589	0.93138	18.552	5	2	Median	1.1722	0.93138	25.993	3	2	Median	0.79363	0.93252	NaN	1	0	Median	0.93589	0.86994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214020000	110590000	103430000	91852000	45074000	46778000	54005000	26745000	27260000	68166000	38773000	29393000	0	0	0	40500	1421	38113	248375;248376;248377;248378;248379	333051;333052;333053;333054;333055;333056;333057;333058;333059;333060;333061	333051			11	
QALQESLVQILQPQR	0	Unmodified	1749.9737	0.97373226	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	87.08	86.447	2;3	1.1829E-10	75973	160511_QHF_FH_JSI11i_2	154.28	134.07			0.95561	0.95294	29.727	9	3	Median	1.1213	0.96355	18.971	3	2	Median	1.0252	1.2452	3.5307	2	0	Median	0.89451	0.89059	9.5687	2	0	Median	0.60154	0.6368	40.048	2	1	Median	157500000	88071000	69425000	48093000	24674000	23419000	37527000	22085000	15442000	49779000	26449000	23329000	22097000	14863000	7233900	40501	899	38114	248380;248381;248382;248383;248384;248385;248386;248387;248388	333062;333063;333064;333065;333066;333067;333068;333069;333070	333066			6	
QALQSTPLGSSSK	1	Unmodified	1302.6779	0.67794416	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	26.73	26.02	2	0.00011595	22941	160511_QHF_FH_JSI10i_1	89.356	19.532			1.0271	0.90114	39.691	5	3	Median	1.3889	1.1154	36.351	2	2	Median	1.0271	1.202	NaN	1	0	Median	0.52168	0.5082	NaN	1	1	Median	0.88071	0.90114	NaN	1	0	Median	226260000	115390000	110880000	79199000	35690000	43508000	57778000	28463000	29315000	34554000	19277000	15276000	54733000	31958000	22775000	40502	235	38115	248389;248390;248391;248392;248393	333071;333072;333073;333074;333075;333076	333074			5	
QALSGFGYR	0	Unmodified	997.49813	0.49812931	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	2					2		2	1	3	2	40.007	36.92	2	1.2203E-16	32291	160511_QHF_FH_JSI9i_2	178.99	144.18			1.0361	0.94058	14.334	8	0	Median	1.0961	0.90814	0.31454	2	0	Median	0.78112	0.96497	NaN	1	0	Median	1.0195	0.97836	9.3464	3	0	Median	1.0356	1.1092	29.177	2	0	Median	2772600000	1386900000	1385800000	433980000	221450000	212530000	529030000	270300000	258730000	992620000	514850000	477770000	816980000	380250000	436730000	40503	503	38116	248394;248395;248396;248397;248398;248399;248400;248401	333077;333078;333079;333080;333081;333082;333083;333084;333085;333086;333087;333088;333089;333090;333091;333092;333093	333084			17	
QALTDFLLAR	0	Unmodified	1146.6397	0.63970816	3750	Q8WTW3	COG1	Conserved oligomeric Golgi complex subunit 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	82.126	81.001	2	0.018049	70039	160511_QHF_FH_JSI12i_2	44.318	26.498			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40504	3750	38117	248402	333094	333094			1	
QALVAIFTHLR	0	Unmodified	1267.7401	0.74009091	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	78.802	70.593	2;3	1.2752E-46	37207	160513_QHF_FH_JSI12Kac_6	188.49	159.76			0.93339	1.0494	13.249	7	0	Median	1.3123	1.1238	9.6919	2	0	Median	0.91354	1.0822	1.2565	2	0	Median	0.93186	0.87223	5.5645	2	0	Median	0.83034	0.88272	NaN	1	0	Median	657040000	315910000	341130000	281290000	111250000	170040000	266790000	144400000	122390000	78722000	41399000	37323000	30240000	18859000	11381000	40505	2517	38118	248403;248404;248405;248406;248407;248408;248409	333095;333096;333097;333098;333099;333100;333101;333102;333103;333104;333105	333102			11	
QALVAIFTHLRK	1	Unmodified	1395.8351	0.83505393	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	73.111	64.38	3;4	1.1461E-08	34122	160513_QHF_FH_JSI9Kac_6	106.67	96.057			1.0489	0.99389	15.766	8	0	Median	1.1153	0.97349	1.8041	2	0	Median	0.81231	0.94615	8.0895	2	0	Median	1.3972	1.3459	7.8271	2	0	Median	0.98042	1.0126	4.9263	2	0	Median	291420000	140660000	150770000	72127000	32222000	39905000	156820000	80656000	76165000	24246000	7785400	16461000	38229000	19993000	18236000	40506	2517	38119	248410;248411;248412;248413;248414;248415;248416;248417	333106;333107;333108;333109;333110;333111;333112;333113;333114;333115;333116;333117;333118	333110			13	
QALVGSDSAEDEK	1	Unmodified	1347.6154	0.61540349	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	19.166	18.977	2	2.4752E-07	16440	160511_QHF_FH_JSI12i_1	98.407	80.096			1.1709	1.233	7.953	2	2	Median	NaN	NaN	NaN	0	0	Median	0.98036	1.1655	NaN	1	1	Median	1.3986	1.3043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	110240000	59039000	51199000	0	0	0	59840000	35378000	24462000	50397000	23661000	26736000	0	0	0	40507	305	38120	248418;248419;248420	333119;333120;333121	333120			3	
QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR	0	Unmodified	4394.2158	0.2157768	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.57	95.853	5	3.2778E-54	56627	160513_QHF_FH_JSI10Kac_6	183.24	174.93			1.209	1.407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.209	1.407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107000000	66629000	40375000	0	0	0	107000000	66629000	40375000	0	0	0	0	0	0	40508	2343	38121	248421	333122	333122			1	
QALYEYAR	0	Unmodified	1012.4978	0.49779495	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	30.571	29.696	2	0.0022449	25078	160511_QHF_FH_JSI12i_2	81.548	67.552			1.5458	1.7412	10.836	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5458	1.9168	NaN	1	0	Median	1.5197	1.544	NaN	1	0	Median	1.5493	1.7412	NaN	1	0	Median	258260000	109910000	148350000	0	0	0	80374000	34617000	45758000	84270000	33854000	50416000	93618000	41438000	52180000	40509	5709	38122	248422;248423;248424	333123	333123			1	
QAMFHYFQVPDR	0	Unmodified	1537.7136	0.71361816	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			62.788	61.27	3	0.0087034	51314	160511_QHF_FH_JSI10i_3	38.799	31.918			1.2614	1.4178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2614	1.4178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40403000	18824000	21579000	0	0	0	40403000	18824000	21579000	0	0	0	0	0	0	40510	5338	38123	248425	333124	333124			1	
QAMFLNLVYK	1	Oxidation (M)	1241.6478	0.64783001	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				78.7	68.225	2	0.028668	35180	160513_QHF_FH_JSI9Kac_5	42.109	30.958			0.6388	0.53382	NaN	1	0	Median	0.6388	0.53382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3243400	2064700	1178700	3243400	2064700	1178700	0	0	0	0	0	0	0	0	0	40511	2213	38124	248426	333125	333125			1	
QAMFLNLVYK	1	Unmodified	1225.6529	0.65291539	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	82.907	73.779	2	1.1191E-13	40691	160513_QHF_FH_JSI11Kac_6	146.58	109.04			1.1679	1.0375	18.843	3	3	Plateau	1.2089	1.0375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0943	1.0491	NaN	1	1	Median	0.69751	0.7529	NaN	1	1	Median	123410000	58504000	64905000	51617000	23995000	27622000	0	0	0	47004000	20748000	26256000	24788000	13761000	11027000	40512	2213	38124	248427;248428;248429;248430	333126;333127;333128;333129	333127			4	
QAMGVYITNFHVR	0	Unmodified	1534.7715	0.77146739	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	70.036	61.138	3	2.9069E-08	32457	160513_QHF_FH_JSI9Kac_6	121.21	98.63			1.1657	1.0741	18.228	4	2	Median	1.1755	1.0082	NaN	1	1	Median	0.68061	0.80312	NaN	1	1	Median	1.1701	1.1442	NaN	1	0	Median	1.1613	1.2112	NaN	1	0	Median	247280000	139260000	108020000	70324000	39468000	30857000	101730000	55945000	45788000	39973000	24641000	15332000	35253000	19210000	16043000	40513	1366	38125	248431;248432;248433;248434	333130;333131;333132;333133	333131			2	
QAMGVYITNFHVR	0	Oxidation (M)	1550.7664	0.76638202	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	1	0	By MS/MS	By matching		By MS/MS	16	0									3	1	1		1	59.042	49.885	3	5.9857E-05	26138	160513_QHF_FH_JSI12Kac_6	93.766	83.978			0.92903	1.0229	5.4906	3	1	Median	1.1775	1.0366	NaN	1	0	Median	0.79564	0.93699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92903	1.0229	NaN	1	1	Median	87274000	41552000	45721000	28536000	12694000	15842000	45116000	22495000	22621000	0	0	0	13622000	6364000	7258000	40514	1366	38125	248435;248436;248437	333134;333135	333135		997	2	
QAMLENASDIK	1	Unmodified	1218.5914	0.59143734	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	35.305	34.704	2	6.2666E-18	31140	160511_QHF_FH_JSI11i_1	157.97	135.89			0.99915	0.97888	6.1522	5	2	Median	1.2771	1.0384	NaN	1	0	Median	0.83156	0.97888	NaN	1	0	Median	0.99915	0.97147	NaN	1	0	Median	0.97775	1.0343	10.368	2	2	Median	2130800000	1025700000	1105100000	388950000	148420000	240530000	398080000	216500000	181580000	474750000	231490000	243260000	869060000	429300000	439750000	40515	3634	38126	248438;248439;248440;248441;248442	333136;333137;333138;333139;333140	333137			5	
QAMLENASDIK	1	Oxidation (M)	1234.5864	0.58635197	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				35.965	34.733	2	4.8379E-05	30514	160511_QHF_FH_JSI9i_1	109.16	93.494			1.5167	1.2598	NaN	1	1	Median	1.5167	1.2598	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45551000	16529000	29022000	45551000	16529000	29022000	0	0	0	0	0	0	0	0	0	40516	3634	38126	248443	333141	333141		2276	1	
QAMQEQLSK	1	Unmodified	1061.5175	0.51754412	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	15.08	14.894	2	0.00055424	12355	160511_QHF_FH_JSI11i_1	78.516	16.052			0.649	0.68386	7.9555	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55666	0.64646	NaN	1	0	Median	0.75666	0.72344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70126000	36822000	33304000	0	0	0	39339000	22536000	16803000	30787000	14286000	16501000	0	0	0	40517	4472	38127	248444;248445;248446	333142;333143	333142			2	
QAMTSIWNALVTDK	1	Unmodified	1576.7919	0.79192806	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	3	2		91.118	90.646	2	1.8606E-07	80390	160511_QHF_FH_JSI10i_2	95.417	77.553			5.2285	4.3703	97.941	5	5	Median	5.2285	4.3703	NaN	1	1	Median	3.3113	3.9877	89.083	2	2	Median	2.4191	2.3564	163.28	2	2	Median	NaN	NaN	NaN	0	0	Median	938150000	136230000	801930000	228340000	23372000	204970000	343060000	35614000	307450000	366750000	77239000	289510000	0	0	0	40518	2997	38128	248447;248448;248449;248450;248451;248452	333144;333145;333146;333147;333148;333149	333149			6	
QANDLVSTLMK	1	Unmodified	1218.6278	0.62782285	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.728	63.679	2	0.014153	56721	160511_QHF_FH_JSI9i_1	52.6	32.609			0.44584	0.37273	NaN	1	1	Median	0.44584	0.37273	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207470000	149460000	58009000	207470000	149460000	58009000	0	0	0	0	0	0	0	0	0	40519	2332	38129	248453	333150	333150			1	
QANGVVGNEAAVK	1	Unmodified	1255.6521	0.65206377	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	19.394	19.025	2	5.1329E-05	16271	160511_QHF_FH_JSI11i_1	77.288	48.118			1.8226	1.9023	3.2798	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7596	1.9469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8878	1.8586	NaN	1	1	Median	30527000	9871200	20656000	0	0	0	19451000	6495400	12956000	0	0	0	11076000	3375800	7700100	40520	5285	38130	248454;248455;248456;248457;248458	333151;333152;333153;333154;333155;333156	333151			6	
QAPAPTVIRDPPSITPAVK	1	Unmodified	1957.0997	0.09966105	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	58.285	58.154	3	0.008709	51582	160511_QHF_FH_JSI11i_3	39.863	34.533			0.87166	0.86402	16.44	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0398	0.97053	NaN	1	0	Median	0.73073	0.7692	NaN	1	0	Median	88790000	48523000	40267000	0	0	0	0	0	0	67037000	36836000	30202000	21753000	11687000	10065000	40521	2352	38131	248459;248460	333157;333158;333159	333157			3	
QAPDNEITIK	1	Unmodified	1127.5823	0.58225287	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.125	29.558	2	0.013262	26590	160511_QHF_FH_JSI12i_1	54.066	44.852			0.065889	0.069799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.065889	0.069799	NaN	1	1	Median	786480000	732050000	54424000	0	0	0	0	0	0	0	0	0	786480000	732050000	54424000	40522	5095	38132	248461	333160	333160			1	
QAPELSLSSQDLELVTK	1	Unmodified	1856.9731	0.97312313	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	84.293	83.956	2	1.2505E-05	76571	160511_QHF_FH_JSI12i_1	96.734	96.318			0.79725	0.89597	5.9487	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77413	0.88451	NaN	1	0	Median	1.0312	0.99626	NaN	1	0	Median	0.89115	0.939	NaN	1	0	Median	60789000	33975000	26814000	0	0	0	26493000	16276000	10217000	12575000	6192500	6382300	21721000	11507000	10214000	40523	117	38133	248462;248463;248464	333161	333161			1	
QAPESPWEEQLAR	0	Unmodified	1539.7318	0.73177065	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	53.639	52.975	2	9.6755E-05	47764	160511_QHF_FH_JSI10i_1	98.353	60.05			1.324	1.4271	4.963	4	0	Linear	1.6584	1.3325	NaN	1	0	Median	1.2392	1.4675	NaN	1	0	Median	1.5292	1.4811	NaN	1	0	Median	1.3167	1.3879	NaN	1	0	Median	223920000	82090000	141830000	39370000	15067000	24303000	62066000	23859000	38208000	60534000	19398000	41136000	61951000	23766000	38184000	40524	128	38134	248465;248466;248467;248468	333162;333163;333164;333165	333163			4	
QAPEWTEEDLSQLTR	0	Unmodified	1801.8483	0.84825697	4156	Q96KC8	DNAJC1	DnaJ homolog subfamily C member 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		73.466	73.132	2	0.054469	66522	160511_QHF_FH_JSI11i_1	36.417	18.751			1.1353	1.0888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.0888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36025000	16071000	19954000	0	0	0	0	0	0	36025000	16071000	19954000	0	0	0	40525	4156	38135	248469	333166	333166			1	
QAPGPAR	0	Unmodified	695.37147	0.37147223	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0				By MS/MS	2	0		1											1	5.4113	4.8401	2	0.012327	2823	160511_QHF_FH_JSI12i_2	74.396	14.601		+	1.0875	1.1886	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0875	1.1886	NaN	1	1	Median	188540000	83057000	105480000	0	0	0	0	0	0	0	0	0	188540000	83057000	105480000	40526	65	38136	248470	333167	333167			1	
QAPLAFQAGGR	0	Unmodified	1114.5883	0.5883413	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	36.946	36.159	2	0.001023	30726	160511_QHF_FH_JSI11i_2	66.692	43.263			0.90586	0.93812	67.588	3	2	Median	NaN	NaN	NaN	0	0	Median	0.6741	0.815	94.891	2	2	Median	0.90586	0.93812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	71719000	39661000	32058000	0	0	0	36172000	19616000	16556000	35547000	20046000	15501000	0	0	0	40527	3146	38137	248471;248472;248473;248474	333168;333169;333170;333171;333172	333169			5	
QAPQTIHLPSGEILDVFDAAER	0	Unmodified	2406.2179	0.21793829	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	99.891	99.787	3	2.1733E-18	88165	160511_QHF_FH_JSI10i_2	123.14	117.37			1.0413	1.0844	9.073	5	0	Median	1.2257	1.099	NaN	1	0	Median	0.87777	1.0844	NaN	1	0	Median	1.0413	1.0445	NaN	1	0	Median	1.1223	1.1879	14.049	2	0	Median	286430000	137780000	148650000	36234000	16510000	19724000	47516000	23940000	23575000	74248000	36843000	37406000	128430000	60485000	67947000	40528	1194	38138	248475;248476;248477;248478;248479	333173;333174;333175;333176	333175			3	
QAQAAVLAVLPR	0	Unmodified	1235.735	0.73500553	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.34	6.43	5	8	1			1	5	9		5	10	8	6	70.584	64.571	2;3	1.5626E-108	34280	160513_QHF_FH_JSI11Kac_5	264.62	229.08			0.95071	0.98101	15.416	26	2	Median	1.0993	0.89347	10.09	5	0	Median	0.82423	0.98501	20.667	8	1	Median	1.0182	0.99971	16.732	8	0	Median	0.87108	0.94986	11.882	5	1	Median	919360000	467180000	452180000	152290000	71561000	80727000	234550000	126780000	107770000	328810000	158590000	170230000	203710000	110250000	93458000	40529	4322	38139	248480;248481;248482;248483;248484;248485;248486;248487;248488;248489;248490;248491;248492;248493;248494;248495;248496;248497;248498;248499;248500;248501;248502;248503;248504;248505;248506;248507;248508	333177;333178;333179;333180;333181;333182;333183;333184;333185;333186;333187;333188;333189;333190;333191;333192;333193;333194;333195;333196;333197;333198;333199;333200;333201;333202;333203;333204;333205;333206;333207;333208;333209;333210;333211;333212;333213;333214;333215;333216;333217;333218;333219;333220;333221	333211			45	
QAQEYEALLNIK	1	Unmodified	1418.7405	0.74054442	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	8	6	4							4	4	4	6	68.897	68.121	2;3	5.5806E-93	61731	160511_QHF_FH_JSI10i_1	255.7	229.19			0.93279	0.95005	26.075	18	1	Median	1.0276	0.84645	6.988	4	0	Median	0.78125	0.94253	3.1768	4	0	Median	1.0056	1.009	19.327	4	0	Median	0.89866	0.97148	41.068	6	1	Median	11754000000	5921400000	5832300000	2135200000	1011000000	1124200000	2926200000	1569400000	1356800000	3074500000	1558700000	1515800000	3617800000	1782300000	1835500000	40530	842	38140	248509;248510;248511;248512;248513;248514;248515;248516;248517;248518;248519;248520;248521;248522;248523;248524;248525;248526	333222;333223;333224;333225;333226;333227;333228;333229;333230;333231;333232;333233;333234;333235;333236;333237;333238;333239;333240;333241;333242;333243;333244;333245;333246;333247;333248;333249;333250;333251;333252;333253;333254;333255;333256;333257;333258;333259;333260;333261;333262;333263;333264;333265	333242			44	
QAQHLAETGSNMNDLK	1	Unmodified	1755.821	0.82099636	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		26.268	25.501	3	7.1209E-06	21215	160511_QHF_FH_JSI11i_2	100.23	83.698			1.2127	1.0346	40.653	3	1	Median	1.2127	1.0346	NaN	1	0	Median	1.4373	1.7687	NaN	1	1	Median	0.80897	0.79681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151290000	64894000	86400000	65561000	19763000	45799000	21417000	7173900	14244000	64316000	37958000	26358000	0	0	0	40531	3117	38141	248527;248528;248529;248530	333266;333267;333268;333269;333270	333267			5	
QAQIEVVPSASALIIK	1	Unmodified	1665.9665	0.96652161	1340	P30050	RPL12	60S ribosomal protein L12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	2.92	13	14	9				1	1		8	9	12	9	84.292	82.859	2;3	9.8838E-28	76614	160511_QHF_FH_JSI12i_1	149.69	129.7			0.92857	0.9688	12.323	25	15	Median	1.1279	0.933	8.384	6	2	Median	0.83042	1.0065	4.8541	6	4	Median	0.8942	0.89459	18.758	7	4	Median	0.93012	0.98505	5.39	6	5	Median	6374000000	3344500000	3029500000	1197900000	608000000	589920000	2103000000	1033300000	1069600000	1419800000	769680000	650140000	1653200000	933490000	719760000	40532	1340	38142	248531;248532;248533;248534;248535;248536;248537;248538;248539;248540;248541;248542;248543;248544;248545;248546;248547;248548;248549;248550;248551;248552;248553;248554;248555;248556;248557;248558;248559;248560;248561;248562;248563;248564;248565;248566;248567;248568	333271;333272;333273;333274;333275;333276;333277;333278;333279;333280;333281;333282;333283;333284;333285;333286;333287;333288;333289;333290;333291;333292;333293;333294;333295;333296;333297;333298;333299;333300;333301;333302;333303;333304;333305;333306;333307;333308;333309;333310;333311;333312;333313;333314;333315;333316;333317;333318;333319;333320;333321;333322;333323;333324;333325;333326;333327	333293			57	
QAQILASEAEK	1	Unmodified	1186.6194	0.61936665	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	6.01	6					3	1			2	3	3	2	29.402	25.491	2	3.4502E-09	15280	160513_QHF_FH_JSI11Kac_3	121.73	108.14			1.3057	1.3166	63.262	10	8	Median	1.3943	1.1454	31.614	2	2	Median	1.0327	1.2102	101.07	3	3	Median	2.6019	2.5316	52.927	3	2	Median	1.2406	1.3036	25.249	2	1	Median	1026100000	471600000	554530000	390510000	161950000	228570000	288020000	159700000	128320000	167340000	60102000	107240000	180250000	89850000	90401000	40533	5357	38143	248569;248570;248571;248572;248573;248574;248575;248576;248577;248578	333328;333329;333330;333331;333332;333333;333334;333335;333336;333337;333338	333330			11	
QAQIPLAAVIK	1	Unmodified	1150.7074	0.7073938	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.4	0.49	3	2									2	2	1	69.935	69.408	2	0.011726	62759	160511_QHF_FH_JSI10i_1	67.993	37.738			0.99724	1.1928	15.592	5	0	Median	NaN	NaN	NaN	0	0	Median	0.92582	1.1152	9.5117	2	0	Median	1.1841	1.1537	21.185	2	0	Median	1.4402	1.427	NaN	1	0	Median	111760000	53989000	57773000	0	0	0	42676000	20100000	22576000	53529000	26593000	26937000	15557000	7296500	8260300	40534	614	38144	248579;248580;248581;248582;248583	333339;333340;333341	333340			0	
QAQIVVK	1	Unmodified	784.48069	0.48068833	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	16.012	15.543	2	0.027514	12913	160511_QHF_FH_JSI11i_1	53.554	29.582			0.96598	0.91708	18.696	4	0	Median	1.2041	1.0045	NaN	1	0	Median	0.72118	0.83726	NaN	1	0	Median	0.81741	0.77439	NaN	1	0	Median	1.1415	1.1745	NaN	1	0	Median	302850000	155660000	147190000	63390000	28283000	35107000	71611000	39464000	32147000	65858000	33264000	32594000	101990000	54647000	47343000	40535	4176	38145	248584;248585;248586;248587	333342	333342			1	
QAQIVVKPR	1	Acetyl (K)	1079.6451	0.64512789	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		42.324	32.265	2	0.0055768	19455	160513_QHF_FH_JSI11Kac_4	72.485	56.282			0.44309	0.46946	68.018	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65909	0.75941	NaN	1	0	Median	0.29788	0.29021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8456700	5703500	2753300	0	0	0	2693100	1579500	1113600	5763700	4124000	1639700	0	0	0	40536	4176	38146	248588;248589	333343	333343	3069		1	
QAQNPDQGPK	1	Unmodified	1081.5152	0.51523593	5056	Q9NVZ3	NECAP2	Adaptin ear-binding coat-associated protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.5615	5.2154	2	0.01939	3233	160511_QHF_FH_JSI12i_1	64.42	60.064			0.70886	0.72503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70886	0.72503	NaN	1	0	Median	57465000	28003000	29461000	0	0	0	0	0	0	0	0	0	57465000	28003000	29461000	40537	5056	38147	248590	333344	333344			0	
QAQQAQNVQR	0	Unmodified	1169.5901	0.59013221	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	5.7469	-1.405	2	0.0084221	1965	160513_QHF_FH_JSI12Kac_3	67.981	60.056			0.55704	0.62128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55704	0.62128	NaN	1	1	Median	2094700	1436200	658500	0	0	0	0	0	0	0	0	0	2094700	1436200	658500	40538	4914	38148	248591	333345	333345			1	
QAQQERDELADEIANSSGK	1	Unmodified	2087.972	0.97195393	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	39.945	39.174	3	4.9126E-05	34030	160511_QHF_FH_JSI9i_2	69.361	53.769			1.1458	1.171	47.069	4	1	Median	1.8581	1.5769	NaN	1	0	Median	0.50468	0.61697	NaN	1	1	Median	0.8325	0.86958	NaN	1	0	Median	1.5769	1.613	NaN	1	0	Median	193100000	105160000	87939000	52183000	19334000	32850000	39001000	28003000	10998000	77610000	45428000	32181000	24305000	12395000	11910000	40539	1436	38149	248592;248593;248594;248595;248596	333346;333347;333348;333349;333350;333351	333348			5	
QAQQVIQK	1	Unmodified	941.52943	0.52942943	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				10.195	9.4621	2	0.00077993	6965	160511_QHF_FH_JSI9i_1	92.467	26.795			1.3613	1.1046	NaN	1	1	Median	1.3613	1.1046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26714000	11832000	14881000	26714000	11832000	14881000	0	0	0	0	0	0	0	0	0	40540	3497	38150	248597;248598	333352;333353	333353			2	
QAQSAALK	1	Unmodified	815.45012	0.45011648	5765				yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4	4.75	5			1	1					1	2	2	2	44.447	41.339	2	0.0029759	37395	160511_QHF_FH_JSI11i_1	76.035	39.478	+		1.0572	1.0273	16.134	7	0	Median	1.0907	0.88181	NaN	1	0	Median	0.93729	1.0962	12.528	2	0	Median	1.0572	1.0273	0	2	0	Median	1.3207	1.3477	0	2	0	Median	736880000	307240000	429630000	59236000	25009000	34227000	17548000	9058900	8489000	288100000	133630000	154480000	371990000	139550000	232440000	40541	5765	38151	248599;248600;248601;248602;248603;248604;248605	333354;333355;333356;333357	333354			4	
QAQVATGGGPGAPPGSQPDYSAAWAEYYR	0	Unmodified	2951.3474	0.34744891	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	72.469	71.993	2;3	4.9895E-37	65201	160511_QHF_FH_JSI10i_1	213.03	202.7			0.9122	0.93447	11.812	6	1	Median	1.3622	1.1379	NaN	1	0	Median	0.78228	0.91043	2.3473	2	0	Median	0.95903	0.94335	NaN	1	0	Median	0.99524	1.0305	17.391	2	1	Median	687020000	334490000	352530000	78233000	32842000	45390000	195000000	106630000	88375000	236020000	113930000	122090000	177760000	81090000	96672000	40542	3911	38152	248606;248607;248608;248609;248610;248611;248612	333358;333359;333360;333361;333362;333363;333364;333365;333366	333365			9	
QAQVPLAAVIK	1	Unmodified	1136.6917	0.69174374	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		3					1			1	1	1	1	64.867	61.365	2	0.00023498	53784	160511_QHF_FH_JSI9i_2	91.069	84.173			0.80439	0.7698	32.446	4	2	Median	0.88075	0.74638	NaN	1	1	Median	0.553	0.6837	NaN	1	1	Median	1.3938	1.3994	NaN	1	0	Median	0.73464	0.79396	NaN	1	0	Median	112740000	68665000	44080000	35540000	21378000	14162000	29340000	18697000	10643000	3518700	1206100	2312600	44346000	27385000	16962000	40543	1814	38153	248613;248614;248615;248616	333367;333368;333369;333370	333369			4	
QAQVQIR	0	Unmodified	841.477	0.47699993	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	2	0		3								1		1	1	12.378	11.86	2	0.018166	9280	160511_QHF_FH_JSI12i_2	60.344	21.195			0.88262	0.84278	6.3866	3	0	Median	0.99721	0.84278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88262	0.88032	NaN	1	0	Median	0.68743	0.77628	NaN	1	0	Median	151280000	80737000	70545000	34512000	14829000	19683000	0	0	0	66333000	33320000	33013000	50436000	32588000	17848000	40544	2493	38154	248617;248618;248619	333371	333371			1	
QASDTGSNDAHNKK	2	Acetyl (K)	1513.6757	0.67571233	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		5.3432	-1.9776	3	9.9664E-05	1774	160513_QHF_FH_JSI11Kac_3	116.78	98.367			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10490000	10490000	0	0	0	0	0	0	0	10490000	10490000	0	0	0	0	40545	1181	38155	248620	333372	333372	1037		1	
QASEGPLK	1	Unmodified	828.43413	0.43413207	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.13	7	4	2		1	4	5	3		8	7	6	5	13.732	9.0178	2	2.6925E-07	5524	160513_QHF_FH_JSI11Kac_4	144.38	49.968			0.84161	0.88999	37.827	25	2	Median	1.1766	1.0669	73.33	7	1	Median	0.75092	0.86899	10.425	7	0	Median	0.8923	0.87323	14.039	6	1	Median	0.81922	0.83004	4.5867	5	0	Median	108720000000	49520000000	59200000000	26761000000	10501000000	16260000000	30206000000	14270000000	15936000000	26639000000	12078000000	14561000000	25113000000	12670000000	12443000000	40546	812	38156	248621;248622;248623;248624;248625;248626;248627;248628;248629;248630;248631;248632;248633;248634;248635;248636;248637;248638;248639;248640;248641;248642;248643;248644;248645;248646	333373;333374;333375;333376;333377;333378;333379;333380;333381;333382;333383;333384;333385;333386;333387;333388;333389;333390;333391;333392;333393;333394;333395;333396;333397;333398;333399;333400;333401;333402;333403;333404;333405;333406;333407;333408;333409;333410;333411;333412;333413;333414	333394			42	
QASGNIVYGVFMLHK	1	Oxidation (M)	1678.8501	0.85011165	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	75.988	67.556	3	2.01E-06	35969	160513_QHF_FH_JSI9Kac_6	102.64	89.218			0.94732	1.1191	16.185	4	1	Linear	0.91666	0.79285	NaN	1	1	Median	0.85977	0.98204	NaN	1	0	Median	1.1913	1.1612	NaN	1	0	Median	0.97901	1.0527	NaN	1	0	Median	385950000	194010000	191950000	115110000	61874000	53231000	83479000	40357000	43122000	95469000	42762000	52707000	91901000	49016000	42885000	40547	2752	38157	248647;248648;248649;248650;248651	333415;333416;333417;333418;333419;333420;333421	333418		2127	6	
QASGNIVYGVFMLHK	1	Unmodified	1662.8552	0.85519702	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.17	6.84		2	1						3	3	2	1		78.041	73.604	3	6.1583E-05	38550	160513_QHF_FH_JSI11Kac_6	89.136	69.558			1.1616	1.0635	74.708	6	1	Median	1.1461	1.0028	110.18	3	1	Median	0.9503	1.1471	31.731	2	0	Median	1.1811	1.1279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2035200000	863650000	1171600000	655080000	204240000	450840000	686320000	353800000	332520000	693840000	305620000	388220000	0	0	0	40548	2752	38157	248652;248653;248654;248655;248656;248657	333422;333423;333424;333425;333426;333427;333428	333422			6	
QASIQHIQNAIDTEK	1	Unmodified	1694.8588	0.85876208	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.43	5	8	4				1	4		3	7	6	6	41.669	38.85	2;3	9E-117	33947	160511_QHF_FH_JSI10i_2	287.14	274			0.92175	0.98029	20.245	22	3	Median	1.0636	0.91261	6.6968	3	0	Plateau	0.89424	1.0798	21.898	7	2	Median	0.93061	0.94489	21.75	6	1	Median	0.8607	0.92074	19.454	6	0	Median	5301700000	2684200000	2617500000	573780000	276790000	297000000	1004800000	465110000	539730000	2139800000	1111100000	1028800000	1583200000	831200000	752020000	40549	1246	38158	248658;248659;248660;248661;248662;248663;248664;248665;248666;248667;248668;248669;248670;248671;248672;248673;248674;248675;248676;248677;248678;248679	333429;333430;333431;333432;333433;333434;333435;333436;333437;333438;333439;333440;333441;333442;333443;333444;333445;333446;333447;333448;333449;333450;333451;333452;333453;333454;333455;333456;333457;333458;333459;333460	333453			32	
QASPNIVIALAGNK	1	Unmodified	1394.7882	0.78816332	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.54	6	7	7				3	4		4	7	8	8	70.621	67.361	2;3	5.6025E-40	58537	160511_QHF_FH_JSI12i_3	202.31	190.07			1.0473	1.0329	32.876	27	7	Median	1.1425	0.95686	9.6349	4	1	Median	0.83807	0.99706	12.095	7	2	Median	1.0866	1.0619	11.494	8	4	Median	0.93454	1.0266	58.093	8	0	Median	2487100000	1211100000	1275900000	265330000	123580000	141760000	640790000	333010000	307780000	882370000	411130000	471240000	698570000	343410000	355160000	40550	1727	38159	248680;248681;248682;248683;248684;248685;248686;248687;248688;248689;248690;248691;248692;248693;248694;248695;248696;248697;248698;248699;248700;248701;248702;248703;248704;248705;248706	333461;333462;333463;333464;333465;333466;333467;333468;333469;333470;333471;333472;333473;333474;333475;333476;333477;333478;333479;333480;333481;333482;333483;333484;333485;333486;333487;333488;333489;333490;333491;333492;333493;333494;333495	333494			34	
QASPNIVIALSGNK	1	Unmodified	1410.7831	0.78307794	1174	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		63.1	62.566	2	0.0012196	54454	160511_QHF_FH_JSI11i_2	78.324	66.458			1.0091	1.0098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	1.0098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28726000	13195000	15531000	0	0	0	0	0	0	28726000	13195000	15531000	0	0	0	40551	1174	38160	248707	333496	333496			1	
QASPSIVIALAGNK	1	Unmodified	1367.7773	0.77726428	1931	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.21		4	3					5		2	3	4	3	72.094	67.254	2;3	1.4181E-09	58630	160511_QHF_FH_JSI12i_3	142.19	122.36			1.3369	1.2926	21.546	12	2	Linear	1.1765	0.99268	48.317	2	0	Median	0.87898	1.069	21.017	3	0	Median	0.95	0.96711	12.341	4	1	Median	1.1315	1.1741	26.462	3	1	Plateau	368190000	164650000	203540000	40637000	15634000	25003000	62123000	29325000	32799000	144630000	65721000	78905000	120800000	53972000	66830000	40552	1931	38161	248708;248709;248710;248711;248712;248713;248714;248715;248716;248717;248718;248719	333497;333498;333499;333500;333501;333502;333503;333504;333505;333506;333507;333508;333509;333510;333511	333510			14	
QASQGMVGQLAAR	0	Unmodified	1315.6667	0.66666797	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.71	3	5	1				1			1	2	3	4	34.745	32.898	2	1.2563E-52	27972	160511_QHF_FH_JSI11i_2	211.64	196.05			1.0027	0.98822	13.694	8	2	Median	1.1535	0.98167	NaN	1	0	Median	0.70589	0.85427	14.32	2	0	Median	1.0312	0.99849	0.78516	3	1	Median	1.0293	1.1164	19.479	2	1	Median	1281200000	664960000	616250000	203390000	93688000	109700000	409560000	244610000	164940000	346030000	180540000	165500000	322220000	146120000	176100000	40553	5487	38162	248720;248721;248722;248723;248724;248725;248726;248727;248728;248729	333512;333513;333514;333515;333516;333517;333518;333519;333520;333521;333522;333523;333524;333525	333523			14	
QASSQKPAWK	2	Acetyl (K)	1171.5986	0.59857163	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14.5	0.5							1	1			1		1	32.298	22.904	2	0.0048207	13798	160513_QHF_FH_JSI10Kac_4	70.028	55.891			0.86476	0.98993	4.7612	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85369	1.0238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87598	0.95716	NaN	1	0	Median	36867000	19670000	17198000	0	0	0	35383000	18854000	16529000	0	0	0	1484500	815830	668690	40554	4627	38163	248730;248731	333526	333526	3202		1	
QASTDAGTAGALTPQHVR	0	Unmodified	1779.8864	0.88637381	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.23		5	2					1		1	1	4	2	26.656	24.943	2;3	2.5412E-08	20890	160511_QHF_FH_JSI11i_2	126.14	115.33			1.2098	1.1786	9.9544	8	1	Median	1.293	1.1098	NaN	1	0	Median	0.8644	1.0582	NaN	1	0	Median	1.2131	1.1786	10.875	4	1	Median	1.1974	1.2884	1.8902	2	0	Median	605100000	315720000	289380000	109320000	52763000	56556000	128990000	76313000	52675000	209740000	108070000	101670000	157050000	78575000	78476000	40555	1598	38164	248732;248733;248734;248735;248736;248737;248738;248739	333527;333528;333529;333530;333531;333532;333533;333534;333535;333536;333537;333538;333539;333540;333541;333542;333543	333535			17	
QASVADYEETVK	1	Unmodified	1338.6303	0.63032527	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.995	34.389	2	8.9077E-08	30152	160511_QHF_FH_JSI9i_1	137.55	119.24			0.79137	0.901	10.05	4	0	Linear	1.1069	0.90646	NaN	1	0	Median	0.71852	0.84331	NaN	1	0	Median	0.913	0.89557	NaN	1	0	Median	1.0098	1.0666	NaN	1	0	Median	900830000	454300000	446530000	185620000	71217000	114400000	252350000	141220000	111120000	250230000	147530000	102700000	212630000	94329000	118300000	40556	1659	38165	248740;248741;248742;248743	333544;333545;333546;333547;333548;333549;333550;333551	333550			8	
QASVADYEETVKK	2	Unmodified	1466.7253	0.72528829	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		30.027	29.799	3	0.018672	26562	160511_QHF_FH_JSI11i_1	38.028	25.863			1.7177	1.61	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7177	1.61	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63997000	25258000	38740000	0	0	0	0	0	0	63997000	25258000	38740000	0	0	0	40557	1659	38166	248744	333552	333552			1	
QATDDASLLIVNR	0	Unmodified	1414.7416	0.74160705	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	55.265	54.351	2	0.031607	48305	160511_QHF_FH_JSI9i_1	56.225	45.702			0.88823	0.82855	2.2884	2	1	Median	1.0395	0.84207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75899	0.81526	NaN	1	1	Median	82399000	37885000	44515000	42498000	16844000	25654000	0	0	0	0	0	0	39901000	21041000	18861000	40558	2988	38167	248745;248746	333553;333554	333554			1	
QATDHQELVEIPTRPLLTK	1	Unmodified	2188.1852	0.18518159	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			63.893	62.381	4	8.0045E-05	52223	160511_QHF_FH_JSI10i_3	80.238	70.984			0.68773	0.78874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68773	0.78874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59437000	34973000	24464000	0	0	0	59437000	34973000	24464000	0	0	0	0	0	0	40559	3411	38168	248747	333555	333555			1	
QATDNSEISSATK	1	Unmodified	1350.6263	0.62630252	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	13.726	13.035	2	8.5616E-23	10461	160511_QHF_FH_JSI9i_1	181.66	169.43			1.0679	0.98639	32.532	2	1	Median	0.96698	0.78369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1795	1.2415	NaN	1	1	Median	88372000	42463000	45909000	50534000	24513000	26021000	0	0	0	0	0	0	37838000	17950000	19887000	40560	1581	38169	248748;248749	333556;333557;333558	333558			3	
QATEDRLTSAKELPYFEGDFWPNVLEESIK	2	Acetyl (K)	3553.7253	0.72529487	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.338	87.931	3	3.5724E-91	47467	160513_QHF_FH_JSI12Kac_6	214.44	196.11			1.182	1.2539	27.093	3	0	Median	0.94848	0.81932	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4224	1.3553	NaN	1	0	Median	1.182	1.2539	NaN	1	0	Median	736300000	361740000	374560000	68551000	37753000	30798000	80883000	80883000	0	239430000	88145000	151280000	347440000	154960000	192480000	40561	2285;3886	38170	248750;248751;248752;248753	333559;333560;333561	333560	2397		3	
QATEGPCNMPK	1	Unmodified	1231.5325	0.53254226	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.516	16.241	2	3.2289E-23	13951	160511_QHF_FH_JSI12i_1	175.93	159.73			1.2008	1.2275	44.395	3	1	Median	NaN	NaN	NaN	0	0	Median	1.6289	1.9372	NaN	1	0	Median	0.81975	0.79728	NaN	1	1	Median	1.2008	1.2275	NaN	1	0	Median	178820000	83629000	95191000	0	0	0	63535000	22606000	40928000	45662000	27812000	17851000	69622000	33211000	36412000	40562	538	38171	248754;248755;248756	333562;333563;333564;333565;333566;333567;333568	333565			7	
QATFEYSFIPAEPMGGRPFGLVINLNYK	1	Oxidation (M)	3174.5848	0.58484241	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			92.901	85.612	3	3.0937E-70	49739	160513_QHF_FH_JSI10Kac_6	192.12	179.78			0.97008	0.98231	4.9484	2	0	Median	1.1074	0.94853	NaN	1	0	Median	0.84979	1.0173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195270000	104570000	90692000	55112000	27210000	27902000	140150000	77364000	62790000	0	0	0	0	0	0	40563	1559	38172	248757;248758	333569;333570	333570		1228	2	
QATFEYSFIPAEPMGGRPFGLVINLNYK	1	Unmodified	3158.5899	0.58992779	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	95.382	87.324	3	3.86E-178	51334	160513_QHF_FH_JSI10Kac_6	285.57	256.41			0.79899	0.95831	96.248	3	1	Plateau	1.1295	0.98626	NaN	1	0	Median	0.79899	0.95831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4.8558	5.1483	NaN	1	1	Median	1083600000	495090000	588550000	303910000	139660000	164250000	462270000	286460000	175810000	0	0	0	317460000	68967000	248490000	40564	1559	38172	248759;248760;248761	333571;333572;333573;333574;333575	333575			5	
QATGIEDGELRR	0	Unmodified	1343.6793	0.67934115	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	4	2	20.403	19.959	2;3	0.0011534	16440	160511_QHF_FH_JSI12i_2	54.199	45.011			1.2111	1.2391	10.199	6	0	Median	1.5419	1.3265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2984	1.319	10.533	3	0	Median	1.0518	1.128	2.1531	2	0	Median	325920000	135210000	190710000	44486000	18690000	25796000	0	0	0	163300000	65011000	98287000	118130000	51508000	66624000	40565	2457	38173	248762;248763;248764;248765;248766;248767;248768;248769;248770	333576;333577;333578;333579;333580;333581;333582	333578			6	
QATHDQAVQALK	1	Unmodified	1308.6786	0.67861287	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	13.796	13.279	2;3	0.00014896	10641	160511_QHF_FH_JSI12i_2	80.69	65.151			0.97551	0.9095	64.281	5	2	Median	0.97551	0.83805	NaN	1	0	Median	0.74761	0.9095	NaN	1	0	Median	1.5689	1.5559	99.064	2	1	Median	1.9713	2.2244	NaN	1	1	Median	187230000	90146000	97082000	28677000	16084000	12593000	43504000	25961000	17543000	85177000	33276000	51901000	29871000	14826000	15045000	40566	2407	38174	248771;248772;248773;248774;248775	333583;333584;333585;333586;333587	333583			4	
QATINIGTIGHVAHGK	1	Unmodified	1615.8794	0.87943794	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.39		2	11						8	7	6	4	4	46.507	42.036	2;3;4	3.5825E-22	35436	160511_QHF_FH_JSI10i_3	171.56	119.79			0.8935	0.91523	19.634	19	4	Median	1.1658	0.94702	17.88	5	2	Median	0.75038	0.88023	9.0354	6	0	Median	1.0788	1.0344	11.761	4	0	Median	0.79214	0.85143	25.865	4	2	Median	4127400000	2051000000	2076400000	565170000	273070000	292110000	1344700000	692890000	651800000	1361400000	555610000	805820000	856120000	529420000	326700000	40567	1508	38175	248776;248777;248778;248779;248780;248781;248782;248783;248784;248785;248786;248787;248788;248789;248790;248791;248792;248793;248794;248795;248796	333588;333589;333590;333591;333592;333593;333594;333595;333596;333597;333598;333599;333600;333601;333602;333603;333604;333605;333606;333607;333608;333609;333610;333611;333612;333613;333614;333615;333616;333617;333618;333619;333620;333621;333622;333623	333595			35	
QATKDAGQISGLNVLR	1	Acetyl (K)	1711.9217	0.92169668	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	73.105	62.483	2	0.00034675	33667	160513_QHF_FH_JSI12Kac_4	88.441	65.205			1.0661	1.1374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0661	1.1374	NaN	1	0	Median	2192900	1199700	993130	0	0	0	0	0	0	0	0	0	2192900	1199700	993130	40568	1480	38176	248797	333624	333624	1480		1	
QATLIPDEVFDAVK	1	Unmodified	1544.8086	0.80862399	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	90.715	90.287	2	7.7476E-10	81791	160511_QHF_FH_JSI10i_1	148.18	133.49			1.194	1.0224	25.548	5	4	Median	1.194	0.98819	NaN	1	1	Median	0.70927	0.8266	NaN	1	0	Median	1.5512	1.4616	NaN	1	1	Median	1.1604	1.226	25.684	2	2	Median	232240000	114750000	117490000	27217000	11833000	15385000	68815000	41141000	27674000	63164000	27511000	35653000	73045000	34262000	38783000	40569	4803	38177	248798;248799;248800;248801;248802	333625;333626;333627;333628;333629;333630	333629			6	
QATSISSETK	1	Unmodified	1050.5193	0.51931826	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.66	5				1	2				1	1	3	3	10.507	7.5736	2	1.4073E-05	6753	160511_QHF_FH_JSI11i_1	101.38	85.942			1.0437	1.0971	36.764	8	2	Median	1.5183	1.2493	NaN	1	0	Median	0.9908	1.1664	NaN	1	0	Median	1.0425	1.0211	10.628	3	0	Plateau	0.72997	0.79123	66.59	3	2	Median	660550000	331620000	328930000	121970000	48075000	73896000	142310000	90837000	51475000	151420000	73476000	77940000	244850000	119230000	125620000	40570	1778	38178	248803;248804;248805;248806;248807;248808;248809;248810	333631;333632;333633;333634;333635;333636;333637;333638;333639;333640	333631			10	
QATSPASK	1	Unmodified	788.40283	0.40283194	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								2	1		1	4.6847	4.297	2	0.041026	2172	160511_QHF_FH_JSI10i_1	39.253	16.182			1.189	1.1718	17.386	4	0	Median	1.189	0.99882	10.182	2	0	Median	1.0767	1.2793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3236	1.3645	NaN	1	0	Median	610820000	331150000	279660000	244230000	109150000	135080000	174580000	112700000	61883000	0	0	0	192010000	109310000	82696000	40571	1117	38179	248811;248812;248813;248814	333641;333642;333643	333643			3	
QATSTASTFVK	1	Unmodified	1139.5823	0.58225287	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.17	4.84	5						1			2	2	2		24.315	21.667	2	2.1065E-05	18610	160511_QHF_FH_JSI11i_1	102.53	82.202			0.87932	0.90379	27.114	4	2	Median	1.3155	1.0976	NaN	1	1	Median	1.0254	1.1996	NaN	1	1	Median	0.74072	0.72189	4.3099	2	0	Median	NaN	NaN	NaN	0	0	Median	224310000	104700000	119610000	86549000	38098000	48451000	57701000	30255000	27446000	80056000	36348000	43708000	0	0	0	40572	1883	38180	248815;248816;248817;248818;248819;248820	333644;333645;333646;333647;333648;333649;333650	333644			7	
QATTNVYQVQTGSEYTDTSNHSSLK	1	Unmodified	2758.2682	0.26819553	2507	Q14161	GIT2	ARF GTPase-activating protein GIT2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		42.283	41.896	3	3.1991E-23	37629	160511_QHF_FH_JSI10i_1	138.44	127.02			0.69566	0.72167	12.836	2	2	Median	NaN	NaN	NaN	0	0	Median	0.70492	0.79023	NaN	1	1	Median	0.68652	0.65905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64950000	44798000	20152000	0	0	0	32870000	23926000	8943400	32080000	20872000	11208000	0	0	0	40573	2507	38181	248821;248822	333651;333652;333653	333653			3	
QATVGDINTERPGMLDFTGK	1	Oxidation (M)	2165.0423	0.042282105	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.86	4	4	2					1		2	2	4	3	57.733	56.228	3	1.674E-08	49556	160511_QHF_FH_JSI10i_2	110.38	105.12			1.0484	1.0356	9.0616	11	4	Median	1.2313	1.0529	7.9795	2	0	Median	1.0153	1.2103	2.8181	2	1	Median	0.95115	0.93004	11.022	4	2	Linear	0.99096	1.0356	6.3133	3	1	Median	2189800000	1114500000	1075300000	142960000	61735000	81228000	344360000	170090000	174270000	875020000	473110000	401910000	827470000	409530000	417940000	40574	863	38182	248823;248824;248825;248826;248827;248828;248829;248830;248831;248832;248833	333654;333655;333656;333657;333658;333659;333660;333661;333662;333663;333664;333665;333666;333667;333668;333669	333667		398	16	
QATVGDINTERPGMLDFTGK	1	Unmodified	2149.0474	0.047367483	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	4.26	6	8	8					3		5	6	8	6	67.026	65.186	2;3	3.2289E-24	56925	160511_QHF_FH_JSI11i_2	203.9	183.48			0.94707	0.90474	13.671	25	12	Median	1.0382	0.86435	10.91	5	1	Median	0.90525	1.0764	10.993	6	3	Median	0.96977	0.94787	15.311	8	5	Median	0.82461	0.84627	9.7514	6	3	Median	29548000000	14718000000	14831000000	2948700000	1463000000	1485800000	3573100000	2077400000	1495700000	12949000000	6073800000	6875600000	10077000000	5103600000	4973400000	40575	863	38182	248834;248835;248836;248837;248838;248839;248840;248841;248842;248843;248844;248845;248846;248847;248848;248849;248850;248851;248852;248853;248854;248855;248856;248857;248858	333670;333671;333672;333673;333674;333675;333676;333677;333678;333679;333680;333681;333682;333683;333684;333685;333686;333687;333688;333689;333690;333691;333692;333693;333694;333695;333696;333697;333698;333699;333700;333701;333702;333703;333704;333705;333706;333707;333708;333709;333710;333711;333712;333713;333714;333715;333716	333701			47	
QATYGYYLGNPAEFHDSSDHHTFK	1	Unmodified	2784.2205	0.22045748	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0				By MS/MS	3	0			5										5	57.33	57.075	4;5	2.6656E-22	48817	160511_QHF_FH_JSI12i_3	140.66	137.56			1.3958	1.4081	15.22	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3958	1.4081	15.22	5	1	Median	453620000	141200000	312410000	0	0	0	0	0	0	0	0	0	453620000	141200000	312410000	40576	2652	38183	248859;248860;248861;248862;248863	333717;333718;333719;333720;333721;333722;333723	333717			6	
QATYGYYLGNPAEFHDSSDHHTFKK	2	Acetyl (K)	2954.326	0.32598518	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									3		2		1	65.371	56.645	4;5	9.9587E-34	31159	160513_QHF_FH_JSI10Kac_6	149.18	142.53			0.8897	1.0803	6.8254	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92522	1.108	6.1553	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.2136	NaN	1	0	Median	74488000	37019000	37470000	0	0	0	58455000	28153000	30302000	0	0	0	16034000	8865800	7168000	40577	2652	38184	248864;248865;248866	333724;333725;333726;333727;333728	333727	2616		5	
QATYTTTR	0	Unmodified	940.46141	0.46140945	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			2	1	3	1	7.5883	5.2006	2	0.00059859	4758	160511_QHF_FH_JSI10i_1	102.95	84.164			1.1162	1.1351	21.618	7	0	Median	1.3533	1.1456	1.3099	2	0	Median	1.059	1.2519	NaN	1	0	Median	1.1162	1.1021	32.372	3	0	Median	0.9124	0.96493	NaN	1	0	Median	813460000	405830000	407640000	199350000	88617000	110740000	216470000	114630000	101840000	187140000	93106000	94029000	210510000	109470000	101030000	40578	2198	38185	248867;248868;248869;248870;248871;248872;248873	333729;333730;333731;333732;333733;333734	333732			6	
QAVAWLVAMHK	1	Unmodified	1252.675	0.67504781	4345	Q9BQ24	ZFYVE21	Zinc finger FYVE domain-containing protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	66.202	61.362	3	5.8879E-10	32527	160513_QHF_FH_JSI9Kac_6	104.79	98.359			0.98579	0.95172	10.437	8	0	Median	1.0216	0.85567	2.4416	2	0	Median	0.87221	1.0314	14.612	2	0	Median	1.0292	0.99532	3.089	2	0	Median	0.86724	0.91294	10.292	2	0	Median	337180000	164790000	172390000	73489000	37905000	35584000	119300000	56682000	62618000	75898000	36748000	39149000	68491000	33458000	35033000	40579	4345	38186	248874;248875;248876;248877;248878;248879;248880;248881	333735;333736;333737;333738;333739;333740;333741;333742;333743;333744	333739			8	
QAVDFLSNEGHIYSTVDDDHFK	1	Unmodified	2536.1506	0.15064658	1086	P15927	RPA2	Replication protein A 32 kDa subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	70.787	70.245	3;4	0.011116	60756	160511_QHF_FH_JSI12i_3	28.001	19.61			2.4137	2.6604	62.653	2	1	Median	NaN	NaN	NaN	0	0	Median	3.3036	4.1433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7635	1.7082	NaN	1	0	Median	55441000	16772000	38670000	0	0	0	11233000	1879700	9353200	0	0	0	44208000	14892000	29316000	40580	1086	38187	248882;248883	333745;333746;333747	333746			3	
QAVDQIK	1	Unmodified	800.43922	0.43921744	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	13.43	10.084	2	0.0014253	6817	160513_QHF_FH_JSI11Kac_3	108.09	50.985			1.0529	1.0796	10.55	7	0	Median	1.2959	1.0388	NaN	1	0	Median	0.88603	1.0413	17.64	2	0	Median	1.1872	1.1594	10.076	2	0	Median	0.99227	1.0767	10.643	2	0	Median	5335300000	2743000000	2592300000	1255600000	606310000	649260000	1472700000	833440000	639290000	1175800000	533430000	642400000	1431100000	769790000	661360000	40581	1073	38188	248884;248885;248886;248887;248888;248889;248890	333748;333749;333750;333751;333752;333753;333754;333755;333756;333757;333758	333752			11	
QAVDQISSGFFSPK	1	Unmodified	1509.7464	0.74635808	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		64.75	64.352	2	0.00059365	58462	160511_QHF_FH_JSI11i_1	91.093	68.176			1.4209	1.4934	25.949	2	1	Median	NaN	NaN	NaN	0	0	Median	1.097	1.243	NaN	1	0	Median	1.8403	1.7941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75327000	30897000	44431000	0	0	0	31938000	17574000	14364000	43390000	13323000	30067000	0	0	0	40582	992	38189	248891;248892	333759;333760	333759			1	
QAVDVSPLR	0	Unmodified	983.53999	0.53999412	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	36.204	33.695	2	5.158E-07	29693	160511_QHF_FH_JSI9i_1	138.4	108.21			1.0667	0.92845	19.792	5	4	Median	1.1447	0.92845	NaN	1	0	Median	1.0667	1.2739	NaN	1	1	Median	0.96119	0.93877	20.025	2	2	Median	0.75892	0.79728	NaN	1	1	Median	2428400000	1195300000	1233100000	422240000	216290000	205950000	710180000	348690000	361490000	846880000	378240000	468640000	449140000	252100000	197040000	40583	1594	38190	248893;248894;248895;248896;248897	333761;333762;333763;333764;333765;333766	333765			6	
QAVDVSPLRR	0	Unmodified	1139.6411	0.64110515	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.16		5	6					1	4	6	5	3	2	29.109	25.667	2;3	5.7158E-11	21242	160511_QHF_FH_JSI10i_3	146.69	98.536			1.037	1.1147	11.957	16	1	Median	1.3485	1.1555	8.1272	6	0	Median	0.99812	1.1175	8.6049	5	1	Median	0.97918	0.94775	15.567	3	0	Median	0.95771	1.0147	1.9335	2	0	Median	3702600000	1713700000	1988900000	2009900000	821330000	1188600000	1437100000	770020000	667070000	180080000	88381000	91694000	75492000	33925000	41567000	40584	1594	38191	248898;248899;248900;248901;248902;248903;248904;248905;248906;248907;248908;248909;248910;248911;248912;248913	333767;333768;333769;333770;333771;333772;333773;333774;333775;333776;333777;333778;333779;333780;333781;333782;333783;333784;333785;333786;333787;333788;333789;333790	333772			24	
QAVEAAK	1	Unmodified	715.38645	0.38645359	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.404	5.1743	2	0.022321	3134	160511_QHF_FH_JSI12i_1	56.122	56.122			1.5111	1.6186	25.038	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2224	1.4673	NaN	1	0	Median	1.039	1.0072	NaN	1	0	Median	1.5259	1.6186	NaN	1	0	Median	2078100000	1010500000	1067600000	0	0	0	692110000	392060000	300050000	659190000	325340000	333850000	726800000	293140000	433660000	40585	2104	38192	248914;248915;248916	333791;333792;333793	333792			3	
QAVEQQIQSHR	0	Unmodified	1322.6691	0.66911081	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.16		9	6					4		3	3	7	6	13.55	10.989	2;3	1.2483E-36	9008	160511_QHF_FH_JSI12i_3	180.88	140.16			1.0146	1.041	26.92	16	5	Median	1.3106	1.1101	23.418	3	0	Plateau	0.87961	1.062	31.883	3	0	Median	1.0787	1.0629	19.298	6	2	Median	1.0419	1.1	36.507	4	3	Median	1154700000	583030000	571680000	153860000	72839000	81019000	180490000	108220000	72278000	467930000	214670000	253260000	352430000	187310000	165120000	40586	1400	38193	248917;248918;248919;248920;248921;248922;248923;248924;248925;248926;248927;248928;248929;248930;248931;248932;248933;248934;248935	333794;333795;333796;333797;333798;333799;333800;333801;333802;333803;333804;333805;333806;333807;333808;333809;333810;333811;333812;333813;333814;333815;333816;333817;333818;333819	333819			26	
QAVFFVGQSAR	0	Unmodified	1208.6302	0.63020611	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.3		2	1					2	4	3	3	1	2	56.711	49.961	2	5.6748E-11	27109	160513_QHF_FH_JSI11Kac_6	134.68	110.52			1.1077	1.092	21.241	9	3	Median	1.9227	1.6322	33.614	3	1	Plateau	0.83875	1.0045	25.105	3	2	Median	1.1092	1.092	NaN	1	0	Median	1.1026	1.1959	0.5951	2	0	Median	266500000	117920000	148580000	90043000	36806000	53236000	107960000	50590000	57365000	15475000	8566400	6908900	53025000	21959000	31066000	40587	28	38194	248936;248937;248938;248939;248940;248941;248942;248943;248944	333820;333821;333822;333823;333824;333825;333826;333827;333828;333829;333830;333831;333832	333822			13	
QAVGGAGPPNPAINGSAPR	0	Unmodified	1729.886	0.88597988	1319	P29353	SHC1	SHC-transforming protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	36.385	35.776	2	2.8345E-06	32169	160511_QHF_FH_JSI11i_1	126.71	118.19			1.0655	1.0295	14.216	4	2	Median	1.3487	1.1032	NaN	1	1	Median	0.74931	0.85033	NaN	1	0	Median	1.208	1.1665	NaN	1	0	Median	0.93977	0.96077	NaN	1	1	Median	101750000	60573000	41182000	15178000	7779900	7397600	31170000	20042000	11128000	29343000	16736000	12607000	26064000	16015000	10049000	40588	1319	38195	248945;248946;248947;248948;248949	333833;333834;333835;333836;333837;333838;333839	333834			7	
QAVHCIHAIFTNK	1	Unmodified	1537.7824	0.78236643	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		43.292	33.915	3	0.020963	18506	160513_QHF_FH_JSI11Kac_6	38.189	28.401			0.83392	0.75366	2.1797	2	1	Median	0.92709	0.76537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75011	0.74213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13567000	7937500	5629900	6711400	3305100	3406400	0	0	0	6856000	4632500	2223500	0	0	0	40589	2789	38196	248950;248951	333840;333841	333840			2	
QAVINGPNVHPGASMVINEDGSR	0	Unmodified	2361.1495	0.14954114	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.297	54.178	3	4.0326E-24	46397	160511_QHF_FH_JSI12i_3	158.73	150.08			1.0534	1.041	3.4052	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0696	1.0162	NaN	1	1	Median	1.0375	1.0664	NaN	1	0	Median	107560000	53212000	54347000	0	0	0	0	0	0	60992000	25327000	35665000	46567000	27886000	18682000	40590	708	38197	248952;248953	333842;333843;333844	333844			3	
QAVLGAGLPISTPCTTINK	1	Unmodified	1940.0401	0.040097261	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.18	0.386	9	2								3	3	3	2	77.119	76.567	2;3	2.9638E-17	68012	160511_QHF_FH_JSI9i_1	179.46	149.77			0.84788	0.98469	17.371	11	4	Median	1.2384	1.0189	4.8768	3	2	Median	0.81376	0.96026	4.6659	3	1	Median	0.83613	0.8136	4.5649	3	1	Plateau	1.2476	1.2741	0.90982	2	0	Median	792770000	399400000	393360000	167430000	75448000	91979000	161700000	92673000	69027000	285390000	158910000	126480000	178250000	72368000	105880000	40591	1249	38198	248954;248955;248956;248957;248958;248959;248960;248961;248962;248963;248964	333845;333846;333847;333848;333849;333850;333851;333852;333853;333854;333855;333856;333857;333858;333859;333860;333861;333862;333863	333861			19	
QAVMEMMSQK	1	Unmodified	1181.5243	0.52428576	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	2	3	1	40.758	38.591	2	2.9318E-15	33066	160511_QHF_FH_JSI11i_2	168.83	157.68			1.0503	1.1622	39.77	7	1	Median	1.925	1.5922	NaN	1	0	Median	0.70759	0.85598	74.714	2	1	Median	0.98023	0.98506	25.11	3	0	Median	1.0503	1.1622	NaN	1	0	Median	714690000	365460000	349240000	46116000	19279000	26837000	271560000	175790000	95777000	294720000	123610000	171110000	102300000	46779000	55519000	40592	4274	38199	248965;248966;248967;248968;248969;248970;248971	333864;333865;333866;333867;333868;333869;333870;333871;333872	333869			9	
QAVPGRPGPFPSK	1	Unmodified	1336.7252	0.72516913	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			30.136	28.768	3	0.0055772	23434	160511_QHF_FH_JSI9i_3	32.734	19.33			0.83417	0.79558	8.0001	2	0	Median	1.0378	0.84188	NaN	1	0	Median	0.67051	0.75182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84922000	47512000	37410000	44658000	20227000	24431000	40265000	27286000	12979000	0	0	0	0	0	0	40593	5646	38200	248972;248973	333873;333874;333875	333875			3	
QAVPISVPR	0	Unmodified	965.56581	0.56581494	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				43.224	42.173	2	0.011058	36927	160511_QHF_FH_JSI9i_2	49.423	24.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40594	4164	38201	248974	333876	333876			1	
QAVPLFSK	1	Unmodified	888.5069	0.50690308	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	6.43	4	3					1	3		2	2	5	2	48.977	45.974	2	0.0010799	41161	160511_QHF_FH_JSI10i_1	94.302	22.069			1.0472	1.0041	9.9161	9	2	Median	1.0774	0.9307	2.0366	2	0	Median	0.82166	0.98146	12.663	2	0	Median	1.0426	1.0066	6.6186	4	1	Median	1.1652	1.2144	NaN	1	1	Median	713780000	350380000	363400000	160650000	82018000	78630000	206130000	115470000	90654000	287950000	127580000	160360000	59058000	25303000	33754000	40595	4575	38202	248975;248976;248977;248978;248979;248980;248981;248982;248983;248984;248985	333877;333878;333879;333880;333881;333882;333883;333884;333885;333886;333887;333888;333889;333890	333880			14	
QAVPLFSKNVHSTR	1	Acetyl (K)	1624.8685	0.8685389	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		57.927	48.204	3	1.1599E-05	26090	160513_QHF_FH_JSI11Kac_6	101.42	80.758			0.34075	0.32319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34075	0.32319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28094000	16945000	11149000	0	0	0	0	0	0	28094000	16945000	11149000	0	0	0	40596	4575	38203	248986	333891	333891	3188		1	
QAVQILDELAEK	1	Unmodified	1355.7296	0.72964538	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.136	73.453	2	3.5923E-16	63376	160511_QHF_FH_JSI12i_2	164.64	149.49			0.9672	1.0103	17.959	8	1	Median	1.2321	1.041	31.643	2	1	Median	0.75262	0.89707	24.769	2	0	Median	0.98584	0.9712	3.7399	2	0	Median	1.0365	1.1092	11.365	2	0	Median	589620000	314610000	275010000	109370000	49077000	60296000	156660000	94838000	61818000	207670000	106750000	100920000	115920000	63944000	51978000	40597	4331	38204	248987;248988;248989;248990;248991;248992;248993;248994	333892;333893;333894;333895;333896;333897;333898;333899;333900;333901;333902;333903;333904;333905;333906;333907	333895			16	
QAVQILQQVTVR	0	Unmodified	1381.8041	0.80414773	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		2						2		1	1	1	1	66.59	60.671	2	2.0981E-06	52036	160511_QHF_FH_JSI12i_2	125.75	103.01			1.0394	0.95545	16.803	4	0	Median	1.0159	0.84173	NaN	1	0	Median	0.69658	0.83639	NaN	1	0	Median	1.0941	1.0845	NaN	1	0	Median	1.0634	1.154	NaN	1	0	Median	64653000	32995000	31658000	26344000	14681000	11662000	2476900	1379800	1097200	2993100	1250500	1742600	32839000	15683000	17156000	40598	4332	38205	248995;248996;248997;248998	333908;333909;333910;333911;333912	333909			5	
QAVSASGK	1	Unmodified	746.39227	0.39226725	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.95	3	2	1			2				1	1	3	3	4.9517	2.8967	2	0.0006475	2466	160511_QHF_FH_JSI11i_1	101.33	41.686			1.1593	1.2074	7.7672	8	1	Median	1.5592	1.2618	NaN	1	0	Median	1.0825	1.2821	NaN	1	0	Median	1.2212	1.1868	4.4313	3	1	Median	0.98549	1.0483	11.03	3	0	Plateau	2828000000	1406400000	1421600000	64379000	27892000	36487000	867170000	460950000	406220000	934400000	427600000	506800000	962040000	489930000	472110000	40599	1066	38206	248999;249000;249001;249002;249003;249004;249005;249006	333913;333914;333915;333916;333917;333918;333919;333920	333913			8	
QAVSMFLGAVEEAK	1	Unmodified	1478.7439	0.74391524	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.17	0.373		5	1							3	1	2		79.049	78.325	2;3	1.2443E-12	68973	160511_QHF_FH_JSI9i_2	116.71	83.305			1.0935	0.93591	64.182	2	2	Median	1.0935	0.93591	64.182	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23551000	9658400	13892000	23551000	9658400	13892000	0	0	0	0	0	0	0	0	0	40600	1659	38207	249007;249008;249009;249010;249011;249012	333921;333922;333923;333924;333925;333926	333924			6	
QAVSMFLGAVEEAKK	2	Unmodified	1606.8389	0.83887826	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	5.91		2	6						3	3	2	5	1	72.104	69.076	2;3	2.369E-21	60443	160511_QHF_FH_JSI12i_3	141.58	123.31			0.8187	0.98124	85.86	9	5	Median	0.79798	0.69007	50.35	3	1	Median	0.8187	0.98124	NaN	1	0	Median	1.972	1.8992	111.49	5	4	Median	NaN	NaN	NaN	0	0	Median	545520000	258740000	286770000	210980000	114420000	96558000	92203000	58400000	33803000	242340000	85925000	156410000	0	0	0	40601	1659	38208	249013;249014;249015;249016;249017;249018;249019;249020;249021;249022;249023	333927;333928;333929;333930;333931;333932;333933;333934;333935;333936;333937	333936			11	
QAVTNPNNTFYATK	1	Unmodified	1567.7631	0.76307078	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.14	4					3	3			1	3	3	3	40.943	34.929	2	1.6847E-52	31039	160511_QHF_FH_JSI10i_1	223.31	223.31			0.83962	0.83394	14.081	10	0	Median	1.0757	0.89079	NaN	1	0	Median	0.63779	0.8174	3.7544	3	0	Plateau	0.83247	0.81103	2.0833	3	0	Plateau	1.1184	1.1607	14.664	3	0	Plateau	2591500000	1405600000	1185900000	498250000	255490000	242760000	683290000	365810000	317480000	858720000	513390000	345330000	551210000	270870000	280340000	40602	1480	38209	249024;249025;249026;249027;249028;249029;249030;249031;249032;249033	333938;333939;333940;333941;333942;333943;333944;333945;333946;333947;333948;333949;333950;333951;333952;333953;333954;333955;333956;333957;333958;333959;333960;333961;333962	333949			25	
QAVTNPNNTFYATKR	1	Unmodified	1723.8642	0.86418181	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							3	1			28.825	27.577	3	1.2117E-15	22878	160511_QHF_FH_JSI10i_3	159.41	148.56			1.0543	0.90911	7.1163	3	1	Median	1.1081	0.93588	4.1047	2	1	Median	0.69	0.83626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292710000	133350000	159370000	213250000	84858000	128390000	79468000	48488000	30980000	0	0	0	0	0	0	40603	1480	38210	249034;249035;249036;249037	333963;333964;333965;333966;333967	333964			5	
QAVTPPGLQEAINDLVK	1	Unmodified	1791.9731	0.97306355	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.59	100.48	2	7.2136E-05	88795	160511_QHF_FH_JSI9i_1	90.731	53.884			1.095	0.99284	32.536	4	2	Linear	0.71042	0.56745	NaN	1	1	Median	0.99748	1.1463	NaN	1	0	Median	0.9243	0.88355	NaN	1	1	Median	1.0941	1.1156	NaN	1	0	Median	91841000	48912000	42930000	11837000	5901500	5935900	26798000	13329000	13470000	20938000	10085000	10853000	32268000	19597000	12671000	40604	690	38211	249038;249039;249040;249041	333968;333969;333970;333971;333972;333973	333973			6	
QAVYFFSPAPDPR	0	Unmodified	1493.7303	0.73031409	5037	Q9NVM4	PRMT7	Protein arginine N-methyltransferase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	76.389	65.843	2	2.8647E-17	35085	160513_QHF_FH_JSI11Kac_5	145.91	127.6			1.3937	1.5077	12.342	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4161	1.6843	NaN	1	0	Median	1.3441	1.3164	NaN	1	0	Median	1.3937	1.5077	NaN	1	0	Median	25640000	11737000	13903000	0	0	0	9212600	4327000	4885600	12615000	5699700	6915300	3812100	1710100	2102000	40605	5037	38212	249042;249043;249044	333974;333975;333976;333977	333974			4	
QAVYQQVYRPVYFQLVDVLLHK	1	Unmodified	2705.4693	0.46934237	612	O94829	IPO13	Importin-13	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.67	87.949	4	0.0038442	50503	160513_QHF_FH_JSI10Kac_6	60.602	53.953			0.926	1.107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.926	1.107	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65913000	33164000	32749000	0	0	0	65913000	33164000	32749000	0	0	0	0	0	0	40606	612	38213	249045	333978	333978			1	
QAWATDDVAQIYDK	1	Unmodified	1622.7577	0.75765105	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	63.9	63.273	2	0.00010707	56184	160511_QHF_FH_JSI9i_1	107.37	97.367			0.6952	0.83722	16.521	5	3	Linear	0.82473	0.68942	NaN	1	0	Median	0.70795	0.83722	NaN	1	0	Median	0.95402	0.91499	NaN	1	1	Median	0.89365	0.92569	21.26	2	2	Median	238480000	128350000	110130000	33137000	13800000	19337000	42936000	24982000	17954000	51758000	25497000	26262000	110650000	64067000	46580000	40607	21	38214	249046;249047;249048;249049;249050	333979;333980;333981;333982;333983;333984	333983			6	
QAWFIENEEQEYVQTVK	1	Unmodified	2140.0113	0.011299553	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.573	5	9	1							4	4	3	4	80.696	80.033	2;3	2.2903E-183	72907	160511_QHF_FH_JSI11i_1	345.38	317.15			1.0561	1.0304	18.312	15	7	Median	1.2067	0.98266	10.006	4	3	Median	0.7967	0.95064	14.364	4	3	Median	1.0561	1.0626	16.566	3	0	Median	1.0172	1.1341	27.705	4	1	Median	2105600000	1023500000	1082100000	397460000	184050000	213410000	527080000	288700000	238380000	666320000	332130000	334180000	514770000	218620000	296150000	40608	805	38215	249051;249052;249053;249054;249055;249056;249057;249058;249059;249060;249061;249062;249063;249064;249065	333985;333986;333987;333988;333989;333990;333991;333992;333993;333994;333995;333996;333997;333998;333999;334000;334001;334002;334003;334004;334005;334006;334007;334008;334009;334010;334011;334012;334013;334014;334015;334016;334017;334018;334019;334020	333987			36	
QAWQKADINTK	2	Acetyl (K)	1343.6834	0.68336389	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				2	2	2	47.986	38.028	2	1.248E-07	22229	160513_QHF_FH_JSI11Kac_4	117.52	97.733			0.60302	0.64606	83.301	5	2	Median	NaN	NaN	NaN	0	0	Median	1.6689	2.0374	NaN	1	1	Median	0.31183	0.30416	18.543	2	0	Median	0.78107	0.84717	38.327	2	1	Median	59334000	39069000	20266000	0	0	0	10482000	5376000	5106400	40873000	29096000	11777000	7978900	4597200	3381700	40609	1720	38216	249066;249067;249068;249069;249070;249071	334021;334022;334023;334024;334025;334026;334027;334028	334024	1726;1727		8	
QAYEDLRK	1	Unmodified	1021.5193	0.51925868	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	12.358	11.83	2	0.00018428	9121	160511_QHF_FH_JSI11i_2	122.19	62.114			0.90082	0.97391	16.616	4	0	Median	1.1664	1.0033	NaN	1	0	Median	0.8615	1.0594	NaN	1	0	Median	0.94194	0.94541	NaN	1	0	Median	0.67457	0.72801	NaN	1	0	Median	192090000	101650000	90436000	38176000	17603000	20573000	48809000	27197000	21612000	61258000	33929000	27329000	43842000	22920000	20922000	40610	4989	38217	249072;249073;249074;249075	334029;334030;334031;334032;334033;334034;334035	334033			7	
QAYEPPPPPAYR	0	Unmodified	1384.6776	0.67755023	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	38.01	37.269	2	1.0952E-15	33554	160511_QHF_FH_JSI11i_1	143.89	115.88			0.88167	0.77882	2.4735	2	2	Median	0.9677	0.79256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80328	0.76531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	325150000	227500000	97645000	171110000	123720000	47392000	0	0	0	154030000	103780000	50254000	0	0	0	40611	2697	38218	249076;249077;249078;249079;249080;249081	334036;334037;334038;334039;334040;334041	334037			6	
QAYTGNNSSQIQAAMK	1	Unmodified	1710.7995	0.79953264	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.868	33.266	2	3.4369E-15	29238	160511_QHF_FH_JSI9i_1	162.22	140.44			0.97218	1.1405	15.244	4	0	Linear	0.95051	0.7891	NaN	1	0	Median	0.86346	1.0202	NaN	1	0	Median	1.1486	1.1305	NaN	1	0	Median	0.99435	1.0073	NaN	1	0	Median	584540000	264290000	320240000	115060000	54933000	60123000	173040000	80220000	92821000	181130000	74730000	106400000	115310000	54411000	60903000	40612	611	38219	249082;249083;249084;249085	334042;334043;334044;334045;334046;334047	334047			6	
QAYTQFGGK	1	Unmodified	998.48214	0.48214489	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.13	4	2	1				3	1		3	2	3	3	23.518	19.906	2	8.8138E-11	12743	160513_QHF_FH_JSI11Kac_4	147.19	120.96			1.0368	1.0473	26.925	11	1	Median	1.3578	1.1457	20.236	3	0	Median	0.83937	0.99707	11.21	2	0	Median	1.0628	1.0356	48.451	3	1	Median	0.96852	1.0473	7.6805	3	0	Median	3122300000	1362000000	1760300000	549470000	221110000	328350000	630250000	304180000	326070000	1059400000	410250000	649170000	883160000	426410000	456750000	40613	1267	38220	249086;249087;249088;249089;249090;249091;249092;249093;249094;249095;249096	334048;334049;334050;334051;334052;334053;334054;334055;334056;334057;334058;334059;334060;334061	334055			14	
QAYVDKLEELMK	2	Unmodified	1465.7487	0.74866627	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	74.062	73.312	3	0.0024538	64674	160511_QHF_FH_JSI9i_2	53.001	47.847			1.0265	1.0736	24.474	4	0	Median	0.91824	0.78572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93771	0.95262	NaN	1	0	Median	1.2539	1.2817	8.154	2	0	Median	175650000	88023000	87630000	28762000	17290000	11472000	0	0	0	61881000	34865000	27016000	85011000	35869000	49142000	40614	3852	38221	249097;249098;249099;249100	334062;334063;334064;334065	334063			4	
QCEGITSPEGSK	1	Unmodified	1291.5714	0.57143018	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.849	14.722	2	7.8783E-05	12173	160511_QHF_FH_JSI11i_1	105.46	90.791			0.82506	0.78716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82506	0.78716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38726000	19550000	19176000	0	0	0	0	0	0	38726000	19550000	19176000	0	0	0	40615	5650	38222	249101	334066	334066			1	
QCFLVLR	0	Unmodified	934.50586	0.50585722	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.241	54.874	2	0.0089645	47054	160511_QHF_FH_JSI12i_2	92.319	63.17			0.77719	0.86361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77719	0.86361	NaN	1	1	Median	105260000	57511000	47751000	0	0	0	0	0	0	0	0	0	105260000	57511000	47751000	40616	1064	38223	249102	334067	334067			1	
QCFYEDIAQGTK	1	Unmodified	1458.6449	0.64492948	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	48.513	47.849	2	1.8826E-05	43452	160511_QHF_FH_JSI12i_1	116.55	66.423			1.1789	1.2062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1789	1.2062	NaN	1	1	Median	67279000	35001000	32278000	0	0	0	0	0	0	0	0	0	67279000	35001000	32278000	40617	5573	38224	249103	334068	334068			1	
QCGQVAAAAAAQPPASHGPER	0	Unmodified	2072.981	0.98101925	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	23.854	23.377	3	1.6783E-05	19765	160511_QHF_FH_JSI11i_3	71.073	56.378			1.267	0.9714	24.738	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.81937	0.9714	NaN	1	1	Median	0.97082	0.86903	NaN	1	1	Median	1.3426	1.3948	NaN	1	0	Median	108850000	47213000	61634000	6645000	0	6645000	15626000	9383900	6242200	47970000	22809000	25160000	38605000	15019000	23586000	40618	732	38225	249104;249105;249106;249107;249108	334069;334070;334071;334072;334073	334069			5	
QCGVVKMNK	2	Acetyl (K)	1104.542	0.54198473	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		27.664	19.655	2	0.0389	12431	160513_QHF_FH_JSI11Kac_4	60.478	43.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40619	2178	38226	249109	334074	334074			1	
QCLAEFKR	1	Unmodified	1050.528	0.52804923	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		20.314	19.729	3	0.011635	16485	160511_QHF_FH_JSI11i_3	32.14	20.928			1.1849	1.2521	15.247	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1941	1.3946	NaN	1	0	Median	1.1757	1.1241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86669000	47749000	38920000	0	0	0	25147000	11948000	13199000	61522000	35801000	25722000	0	0	0	40620	4322	38227	249110;249111	334075	334075			1	
QCLPSLDLSCK	1	Unmodified	1319.6214	0.62135726	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.549	57.891	2	0.0094029	52630	160511_QHF_FH_JSI12i_1	58.37	39.099			2.0223	2.1587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0223	2.1587	NaN	1	1	Median	37362000	15731000	21631000	0	0	0	0	0	0	0	0	0	37362000	15731000	21631000	40621	2094	38228	249112	334076	334076			1	
QCMMFSATLSK	1	Unmodified	1302.577	0.57704961	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.718	55.787	2	0.0021942	47872	160511_QHF_FH_JSI12i_2	73.327	62.461			1.916	1.982	19.374	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7441	1.7282	NaN	1	1	Median	2.1049	2.273	NaN	1	1	Median	90296000	34226000	56070000	0	0	0	0	0	0	50454000	22122000	28332000	39842000	12104000	27738000	40622	97	38229	249113;249114	334077;334078	334077			2	
QCPNAVVLFDEVDK	1	Unmodified	1632.7818	0.78175731	4620	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.176	75.63	2	0.0064027	68926	160511_QHF_FH_JSI12i_1	61.48	34.151			1.0929	1.1399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0929	1.1399	NaN	1	1	Median	20057000	8124500	11933000	0	0	0	0	0	0	0	0	0	20057000	8124500	11933000	40623	4620	38230	249115	334079	334079			1	
QCSDLLSQAQYHVAR	0	Unmodified	1774.8421	0.84206616	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.555	45.164	3	0.0033211	38704	160511_QHF_FH_JSI12i_2	52.527	48.907			1.7155	1.9124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7155	1.9124	NaN	1	1	Median	34164000	15733000	18431000	0	0	0	0	0	0	0	0	0	34164000	15733000	18431000	40624	3115	38231	249116	334080	334080			1	
QCSDSSAMESLTK	1	Unmodified	1442.6017	0.60174403	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.916	29.591	2	0.00097443	26299	160511_QHF_FH_JSI10i_1	77.305	50.791			11.747	13.787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11.747	13.787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141330000	20317000	121020000	0	0	0	141330000	20317000	121020000	0	0	0	0	0	0	40625	3860	38232	249117	334081	334081			1	
QCSSLQTAIADAEQRGELALK	1	Unmodified	2288.1431	0.14305878	45	CON__O95678;O95678	KRT75	Keratin, type II cytoskeletal 75	yes	no	0	0	0	1			By MS/MS		3	0			1									1		52.367	52.367	3	0.040399	46451	160511_QHF_FH_JSI11i_3	29.126	20.736		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18396000	18396000	0	0	0	0	0	0	0	18396000	18396000	0	0	0	0	40626	45	38233	249118	334082	334082			1	
QCVENADLPEGEK	1	Unmodified	1487.6562	0.65622244	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.467	27.114	2	6.3807E-10	23686	160511_QHF_FH_JSI9i_1	113.61	96.938			2.2329	2.3437	61.504	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.88587	1.0103	NaN	1	1	Median	0.73175	0.7075	NaN	1	1	Median	2.2329	2.3437	NaN	1	0	Median	142490000	55901000	86587000	0	0	0	35128000	18978000	16150000	29226000	15874000	13352000	78134000	21050000	57084000	40627	4272	38234	249119;249120;249121;249122	334083;334084;334085;334086	334086			4	
QDADSLQR	0	Unmodified	931.43592	0.43592298	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.172	7.9342	2	0.00098289	5785	160511_QHF_FH_JSI10i_1	95.605	52.832			0.86361	0.86741	24.044	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90654	1.0564	NaN	1	0	Median	0.72124	0.71226	NaN	1	0	Median	0.66106	0.68329	NaN	1	0	Median	271870000	146980000	124880000	0	0	0	105640000	51094000	54544000	92801000	50235000	42565000	73430000	45656000	27774000	40628	1051	38235	249123;249124;249125	334087;334088;334089;334090;334091	334090			5	
QDAFANFANFSK	1	Unmodified	1358.6255	0.62551466	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		68.335	67.928	2	0.00013317	61772	160511_QHF_FH_JSI11i_1	101.35	75.411			6.0733	5.9691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.0733	5.9691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118940000	16901000	102040000	0	0	0	0	0	0	118940000	16901000	102040000	0	0	0	40629	2558	38236	249126	334092	334092			1	
QDAFLLSK	1	Unmodified	920.49673	0.49673232	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	45.566	44.893	2	0.0026709	40002	160511_QHF_FH_JSI9i_1	78.334	44.784			0.91513	0.91595	6.8077	4	0	Median	1.0559	0.86592	NaN	1	0	Median	0.88068	1.0191	NaN	1	0	Median	0.95092	0.91454	NaN	1	0	Median	0.87069	0.91736	NaN	1	0	Median	574990000	280690000	294300000	106890000	48753000	58142000	166880000	82758000	84119000	157040000	69770000	87272000	144170000	79408000	64767000	40630	1787	38237	249127;249128;249129;249130	334093;334094	334093			2	
QDALDYITWTYFFR	0	Unmodified	1837.8675	0.86753585	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				97.714	88.609	2	7.6592E-05	50771	160513_QHF_FH_JSI9Kac_6	122.42	85.576			1.1463	0.9728	NaN	1	0	Median	1.1463	0.9728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43532000	18978000	24554000	43532000	18978000	24554000	0	0	0	0	0	0	0	0	0	40631	3516	38238	249131	334095	334095			0	
QDAPHLVK	1	Unmodified	906.49232	0.49231565	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	14.997	14.408	3	0.01407	11603	160511_QHF_FH_JSI12i_2	35.152	23.784			0.9652	0.96713	11.476	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81111	0.9969	NaN	1	0	Median	0.9652	0.96713	NaN	1	0	Median	1.0777	1.1957	NaN	1	0	Median	266390000	122900000	143490000	0	0	0	82701000	39548000	43153000	105490000	46740000	58752000	78198000	36616000	41582000	40632	1755	38239	249132;249133;249134	334096	334096			1	
QDAPSQSENK	1	Unmodified	1102.4891	0.48908076	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.4	5.39	3				2					1	2	2		5.4481	1.6516	2	1.4707E-25	2852	160511_QHF_FH_JSI11i_1	189.38	160.23			0.92861	0.88399	27.181	4	0	Median	1.0657	0.87228	NaN	1	0	Median	0.80913	0.89586	NaN	1	0	Median	0.99978	0.97398	46.031	2	0	Median	NaN	NaN	NaN	0	0	Median	161650000	78451000	83195000	74490000	40159000	34332000	1172300	542880	629370	85984000	37750000	48234000	0	0	0	40633	2594	38240	249135;249136;249137;249138;249139	334097;334098;334099;334100;334101	334097			5	
QDAQDLYEAGEK	1	Unmodified	1365.6048	0.6048388	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	2	2	31.454	28.134	2	1.1559E-05	24993	160511_QHF_FH_JSI11i_1	117.25	102.95			0.8746	0.88184	11.224	6	0	Median	1.0365	0.84489	NaN	1	0	Median	0.75932	0.90585	NaN	1	0	Median	0.82265	0.79333	11.159	2	0	Median	0.92566	0.97684	6.8993	2	0	Median	1033400000	551770000	481640000	274930000	144450000	130480000	263590000	149800000	113800000	255570000	137840000	117740000	239310000	119680000	119620000	40634	932	38241	249140;249141;249142;249143;249144;249145	334102;334103;334104;334105;334106;334107;334108;334109;334110;334111;334112;334113	334103			12	
QDAQDRLDEMDQQK	1	Unmodified	1718.753	0.75297638	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		25.097	24.936	2	0.0069184	21895	160511_QHF_FH_JSI11i_1	66.262	46.501			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40635	5230	38242	249146	334114	334114			1	
QDAQILYK	1	Unmodified	977.5182	0.51819605	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.358	27.802	2	0.0026653	24993	160511_QHF_FH_JSI12i_1	78.377	44.938			0.92506	0.97292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92506	0.97292	NaN	1	0	Median	145170000	75669000	69496000	0	0	0	0	0	0	0	0	0	145170000	75669000	69496000	40636	1018	38243	249147	334115	334115			1	
QDAQSLHGDIPQK	1	Unmodified	1435.7056	0.7055559	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	8	2					2			3	2	5	2	22.704	21.388	2;3	4.3991E-10	18322	160511_QHF_FH_JSI11i_1	142.12	129.88			1.0283	1.008	17.307	11	1	Median	1.1624	0.9724	26.942	3	0	Median	1.004	1.2042	9.4528	2	1	Median	1.0152	1.0009	8.5108	4	0	Median	0.98692	1.0149	28.841	2	0	Median	2387600000	1170800000	1216900000	491850000	234040000	257810000	496460000	267220000	229240000	680990000	325100000	355900000	718330000	344410000	373920000	40637	4940	38244	249148;249149;249150;249151;249152;249153;249154;249155;249156;249157;249158;249159	334116;334117;334118;334119;334120;334121;334122;334123;334124;334125;334126;334127;334128	334116			13	
QDAQVVLYR	0	Unmodified	1090.5771	0.57710791	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.18	5	1				3	3			2	3	3	4	39.938	33.96	2	3.6829E-24	29909	160511_QHF_FH_JSI9i_1	172.25	135.68			0.98952	1.0511	11.867	10	2	Median	1.4756	1.2214	NaN	1	1	Median	0.79323	0.92094	17.856	3	0	Median	1.0872	1.0517	4.5611	3	0	Plateau	0.99762	1.0809	2.306	3	1	Median	2441700000	1151000000	1290800000	495050000	204280000	290770000	647670000	333610000	314060000	661430000	298320000	363100000	637600000	314760000	322840000	40638	2094	38245	249160;249161;249162;249163;249164;249165;249166;249167;249168;249169;249170;249171	334129;334130;334131;334132;334133;334134;334135;334136;334137;334138;334139;334140;334141;334142;334143;334144;334145	334140			17	
QDATVQTER	0	Unmodified	1046.4993	0.49925152	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	7.5359	7.2187	2	4.9359E-06	4765	160511_QHF_FH_JSI9i_1	117.53	83.139			1.0071	0.93769	24.347	5	4	Median	1.1441	0.93769	NaN	1	0	Median	0.70074	0.8356	11.898	2	2	Median	1.0071	0.93957	NaN	1	1	Median	1.415	1.4772	NaN	1	1	Median	405290000	210450000	194840000	100860000	51210000	49655000	177770000	101880000	75891000	67516000	32004000	35512000	59138000	25359000	33779000	40639	2320	38246	249172;249173;249174;249175;249176	334146;334147;334148;334149;334150	334150			5	
QDAVDYLTWTFLYR	0	Unmodified	1789.8675	0.86753585	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.134	88.071	2	6.7824E-37	52135	160513_QHF_FH_JSI10Kac_6	180.2	146.31			1.3484	1.1465	12.476	3	2	Median	1.3484	1.1465	NaN	1	1	Median	0.86123	1.0217	NaN	1	0	Median	1.3671	1.311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	336210000	144030000	192180000	98197000	41107000	57090000	127430000	67689000	59745000	110580000	35234000	75341000	0	0	0	40640	552	38247	249177;249178;249179	334151;334152;334153;334154	334153			4	
QDAVDYLTWTFLYRR	0	Unmodified	1945.9686	0.96864688	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.761	85.041	3	0.021022	48425	160513_QHF_FH_JSI10Kac_6	39.753	29.414			1.9434	2.2627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9434	2.2627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106840000	30106000	76731000	0	0	0	106840000	30106000	76731000	0	0	0	0	0	0	40641	552	38248	249180	334155	334155			1	
QDDGSSSASPSVQGAPR	0	Unmodified	1644.734	0.73395549	4917	Q9NQA3	WASH6P	WAS protein family homolog 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	16.855	16.397	2	2.3614E-16	13937	160511_QHF_FH_JSI10i_1	118.37	92.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11515000	0	11515000	0	0	0	0	0	0	0	0	0	11515000	0	11515000	40642	4917	38249	249181;249182;249183;249184	334156;334157;334158;334159	334158			4	
QDDGTGPEK	1	Unmodified	945.40395	0.40395415	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				4.8117	4.2357	2	0.011795	2184	160511_QHF_FH_JSI9i_1	48.423	19.047			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40643	3911	38250	249185	334160	334160			1	
QDDLMTVK	1	Unmodified	948.45863	0.45863226	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.656	28.337	2	0.028456	25078	160511_QHF_FH_JSI10i_1	50.607	18.252			1.1166	1.2477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1166	1.2477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33135000	13966000	19169000	0	0	0	33135000	13966000	19169000	0	0	0	0	0	0	40644	3473	38251	249186	334161	334161			1	
QDEEQRLK	1	Unmodified	1044.52	0.51998696	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	1	By MS/MS	By matching		By matching	2	0		3								1	1		1	6.5105	6.0344	3	0.017251	3973	160511_QHF_FH_JSI9i_2	39.305	6.042			0.91589	1.1194	23.764	3	0	Median	1.7431	1.494	NaN	1	0	Median	0.91589	1.1194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83777	0.93254	NaN	1	0	Median	184110000	92844000	91261000	65862000	30148000	35714000	54302000	30168000	24134000	0	0	0	63941000	32528000	31414000	40645	1297	38252	249187;249188;249189	334162	334162			1	
QDEEQRLKEEEEDK	2	Unmodified	1803.8123	0.81226539	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			17.934	17.183	3	0.009242	14605	160511_QHF_FH_JSI10i_2	55.841	29.863			4.6406	5.7962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.6406	5.7962	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98000000	17357000	80643000	0	0	0	98000000	17357000	80643000	0	0	0	0	0	0	40646	1297	38253	249190	334163	334163			1	
QDEGVLK	1	Unmodified	787.40758	0.40758296	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.75	4	1			1	3				1	2	3	3	14.148	10.68	2	0.0098703	9583	160511_QHF_FH_JSI10i_1	77.282	28.721			0.87483	0.94444	34.466	9	1	Median	1.1797	0.94444	NaN	1	0	Median	0.72958	0.85533	7.9811	2	0	Median	1.0395	1.0231	4.5457	3	0	Median	0.81852	0.87541	56.364	3	1	Median	5596700000	2794500000	2802300000	1243900000	464920000	779000000	1221500000	687420000	534070000	1586500000	738080000	848420000	1544800000	904030000	640790000	40647	2193	38254	249191;249192;249193;249194;249195;249196;249197;249198;249199	334164;334165;334166;334167;334168;334169;334170;334171	334167			8	
QDEGVLKVIK	2	Acetyl (K)	1169.6656	0.66558856	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		66.068	56.461	2	4.1091E-09	29127	160513_QHF_FH_JSI11Kac_3	146.11	87.126			0.27497	0.27043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27497	0.27043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19660000	16288000	3372200	0	0	0	0	0	0	19660000	16288000	3372200	0	0	0	40648	2193	38255	249200	334172	334172	2312		1	
QDEHGYISR	0	Unmodified	1103.4996	0.49958587	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.81	2	8	1					4		4	3	5	3	10.644	7.8062	2;3	2.6446E-06	6824	160511_QHF_FH_JSI12i_2	125.75	110.13			0.91404	0.93631	15.111	15	1	Median	1.1423	0.97332	27.737	4	1	Median	0.72436	0.89893	7.3477	3	0	Median	0.91404	0.92838	10.007	5	0	Median	0.91541	1.0266	6.1083	3	0	Median	2740800000	1489000000	1251900000	519640000	260950000	258690000	643260000	377610000	265660000	937410000	510020000	427390000	640510000	340390000	300120000	40649	814	38256	249201;249202;249203;249204;249205;249206;249207;249208;249209;249210;249211;249212;249213;249214;249215	334173;334174;334175;334176;334177;334178;334179;334180;334181;334182;334183;334184	334174			12	
QDELGER	0	Unmodified	845.38791	0.38791015	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.0349	7.7972	2	0.0058633	5658	160511_QHF_FH_JSI10i_1	96.19	43.554			0.76524	0.81939	7.4833	3	3	Median	NaN	NaN	NaN	0	0	Median	0.60637	0.72145	NaN	1	1	Median	0.84811	0.82309	NaN	1	1	Median	0.76524	0.81939	NaN	1	1	Median	1213100000	746820000	466320000	0	0	0	427240000	260750000	166490000	374880000	245040000	129840000	411020000	241040000	169980000	40650	2665	38257	249216;249217;249218	334185;334186;334187	334187			3	
QDENDDDDDWNPCK	1	Unmodified	1764.6169	0.6169364	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.726	30.159	2	0.00077651	26960	160511_QHF_FH_JSI12i_1	87.363	85.61			1.2304	1.2873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2304	1.2873	NaN	1	1	Median	62958000	32922000	30036000	0	0	0	0	0	0	0	0	0	62958000	32922000	30036000	40651	2585	38258	249219	334188	334188			1	
QDENRVPSGVNVEGAEVHGFSMGK	1	Unmodified	2542.187	0.18704886	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	55.877	55.753	4	1.1095E-10	49388	160511_QHF_FH_JSI11i_3	86.182	77.359			0.8553	0.83316	16.435	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79133	0.74175	NaN	1	0	Median	0.92444	0.93584	NaN	1	1	Median	131360000	61813000	69543000	0	0	0	0	0	0	96244000	47908000	48336000	35113000	13905000	21207000	40652	3407	38259	249220;249221	334189;334190;334191	334189			3	
QDEQLQK	1	Unmodified	887.43486	0.43486035	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.12	5	1			3					1	2	4	2	7.4126	4.8177	2	6.4959E-09	4621	160511_QHF_FH_JSI12i_1	165.11	85.658			1.0175	1.0019	35.607	9	2	Median	1.224	0.96536	NaN	1	0	Median	0.87549	1.0345	4.5362	2	0	Median	1.035	1.0092	56.067	4	2	Median	0.97019	1.0203	15.65	2	0	Median	4271200000	2049800000	2221500000	1081200000	430780000	650400000	1030500000	495090000	535440000	1146100000	602440000	543620000	1013500000	521450000	492000000	40653	930	38260	249222;249223;249224;249225;249226;249227;249228;249229;249230	334192;334193;334194;334195;334196;334197;334198;334199;334200	334193			9	
QDFETVLLLEPGNK	1	Unmodified	1601.8301	0.83008771	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			84.7	84.561	2	3.0247E-23	76875	160511_QHF_FH_JSI10i_1	147.33	127.69			0.84099	0.95459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84099	0.95459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13633000	9382600	4250100	0	0	0	13633000	9382600	4250100	0	0	0	0	0	0	40654	4753	38261	249231;249232	334201;334202	334202			2	
QDFLPWK	1	Unmodified	932.4756	0.47560295	606;4414	O94776;Q9BTC8	MTA2;MTA3	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3	no	no	0	0	0	0				By MS/MS	2	0		1											1	66.363	65.064	2	0.015682	55936	160511_QHF_FH_JSI12i_2	67.981	51.778			0.97306	1.0576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97306	1.0576	NaN	1	0	Median	32989000	18264000	14725000	0	0	0	0	0	0	0	0	0	32989000	18264000	14725000	40655	606;4414	38262	249233	334203;334204	334203			2	
QDFSPEVLK	1	Unmodified	1061.5393	0.53932542	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.484	47.803	2	0.0029208	43501	160511_QHF_FH_JSI12i_1	62.582	18.813			0.73976	0.81634	27.42	4	2	Median	1.1102	0.91582	NaN	1	0	Median	0.70197	0.82828	NaN	1	1	Median	0.50451	0.49577	NaN	1	1	Median	0.77959	0.80458	NaN	1	0	Median	387240000	227190000	160050000	84971000	48201000	36771000	93759000	52537000	41221000	119390000	78781000	40611000	89123000	47673000	41449000	40656	4678	38263	249234;249235;249236;249237	334205;334206;334207;334208;334209;334210	334208			6	
QDFVQHFSQIVR	0	Unmodified	1502.763	0.7630112	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	2.98		9	10						1	4	5	6	5	62.064	60.996	2;3	8.7878E-65	52770	160511_QHF_FH_JSI12i_2	230.41	185.25			1.0364	1.0347	16.535	20	9	Median	1.2415	1.0486	18.789	4	2	Median	1.1098	1.256	18.494	5	1	Median	1.0203	0.95728	5.8838	6	4	Median	1.0194	1.0295	10.914	5	2	Median	10000000000	4889000000	5111100000	1128500000	480600000	647850000	1566000000	821440000	744520000	4387600000	2114100000	2273500000	2918000000	1472900000	1445200000	40657	1051	38264	249238;249239;249240;249241;249242;249243;249244;249245;249246;249247;249248;249249;249250;249251;249252;249253;249254;249255;249256;249257	334211;334212;334213;334214;334215;334216;334217;334218;334219;334220;334221;334222;334223;334224;334225;334226;334227;334228;334229;334230;334231;334232;334233;334234;334235;334236;334237;334238;334239;334240;334241;334242	334217			32	
QDGDYSPDNSAQPGDR	0	Unmodified	1720.6925	0.69248461	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	16.182	15.429	2	7.8536E-06	13051	160511_QHF_FH_JSI12i_1	122.64	92.895			1.2176	1.163	33.684	2	0	Median	1.0732	0.91655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3815	1.4758	NaN	1	0	Median	71399000	31786000	39613000	31813000	15237000	16576000	0	0	0	0	0	0	39586000	16549000	23037000	40658	4117	38265	249258;249259	334243;334244;334245	334244			3	
QDGGTAPVASASPK	1	Unmodified	1284.631	0.63099397	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.842	14.388	2	1.048E-06	11934	160511_QHF_FH_JSI10i_1	158.86	110.99			0.88753	0.89572	7.985	4	0	Median	0.93355	0.78219	NaN	1	0	Median	0.77177	0.92442	NaN	1	0	Median	0.95017	0.92818	NaN	1	0	Median	0.84379	0.8679	NaN	1	0	Median	243390000	126330000	117060000	66602000	37040000	29562000	54196000	26476000	27720000	57675000	25763000	31912000	64922000	37053000	27869000	40659	4254	38266	249260;249261;249262;249263	334246;334247;334248;334249;334250;334251;334252;334253	334251			8	
QDGNEAVGGFFSQIGQLYMVHHLWAYR	0	Unmodified	3122.4821	0.48210867	500	O75323	GBAS	Protein NipSnap homolog 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.377	88.657	4	0.00036019	50973	160513_QHF_FH_JSI10Kac_6	66.012	59.917			0.81394	0.96237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81394	0.96237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	249870000	200810000	49063000	0	0	0	249870000	200810000	49063000	0	0	0	0	0	0	40660	500	38267	249264	334254	334254			1	
QDGPMPK	1	Unmodified	771.35852	0.35852428	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.7158	9.3492	2	0.029275	7127	160511_QHF_FH_JSI10i_1	52.683	42.933			0.88524	0.94396	11.861	4	0	Median	1.3282	1.1001	NaN	1	0	Median	0.8113	0.95688	NaN	1	0	Median	0.9659	0.93122	NaN	1	0	Median	0.79375	0.82396	NaN	1	0	Median	2056300000	1064100000	992180000	507440000	269750000	237690000	525040000	298100000	226940000	507830000	237800000	270030000	516010000	258490000	257530000	40661	5185	38268	249265;249266;249267;249268	334255;334256;334257;334258;334259;334260	334259			6	
QDGPMPK	1	Oxidation (M)	787.35344	0.3534389	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						2						1	1	5.4736	-1.7613	2	0.037245	1836	160513_QHF_FH_JSI11Kac_3	53.554	43.805			0.85681	0.88917	7.5829	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95044	0.93815	NaN	1	0	Median	0.7724	0.84275	NaN	1	0	Median	13420000	7526500	5893200	0	0	0	0	0	0	8597500	4818800	3778700	4822200	2707700	2114500	40662	5185	38268	249269;249270	334261;334262	334261			2	
QDGQFSVLFTK	1	Unmodified	1268.6401	0.6401021	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	68.795	66.996	2	1.4871E-38	59887	160511_QHF_FH_JSI9i_1	209.97	182.71		+	0.91969	0.8955	12.728	10	1	Median	1.0389	0.88086	12.568	3	1	Plateau	0.8116	0.96065	21.495	2	0	Median	0.9424	0.92866	4.9999	2	0	Median	0.89917	0.96255	6.8951	3	0	Median	2183300000	1122400000	1060900000	318650000	133090000	185550000	497520000	278160000	219360000	699400000	345350000	354050000	667750000	365840000	301900000	40663	55	38269	249271;249272;249273;249274;249275;249276;249277;249278;249279;249280	334263;334264;334265;334266;334267;334268;334269;334270;334271;334272;334273;334274;334275;334276;334277;334278;334279;334280	334275			18	
QDGSPSTELVSGGSDNQVIHWEIEDNQLLK	1	Unmodified	3294.564	0.5640432	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	90.69	90.241	3	0.0019911	82151	160511_QHF_FH_JSI12i_1	35.448	31.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40664	3050	38270	249281	334281	334281			1	
QDGSTIHIR	0	Unmodified	1025.5254	0.52540669	3295	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	13.862	13.134	3	0.055966	10679	160511_QHF_FH_JSI9i_2	12.956	2.0827			1.0987	1.0848	12.252	2	0	Median	1.3521	1.183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89281	0.99475	NaN	1	0	Median	62112000	32565000	29546000	33459000	16600000	16859000	0	0	0	0	0	0	28653000	15965000	12688000	40665	3295	38271	249282;249283	334282	334282			1	
QDHAQQLATAAEER	0	Unmodified	1566.7386	0.73864694	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	4	2	21.349	20.549	2;3	9.7046E-13	16900	160511_QHF_FH_JSI11i_2	119.69	87.166			1.1374	1.162	25.471	6	3	Median	1.6072	1.3882	NaN	1	0	Median	0.78413	0.96424	NaN	1	0	Median	1.2665	1.2311	26.171	2	2	Median	0.93999	1.0064	38.322	2	1	Median	190760000	86125000	104640000	43073000	14728000	28345000	34214000	20778000	13436000	56302000	24482000	31820000	57175000	26136000	31039000	40666	2587	38272	249284;249285;249286;249287;249288;249289;249290;249291;249292;249293	334283;334284;334285;334286;334287;334288;334289;334290	334288			8	
QDHPSSMGVYGQESGGFSGPGENR	0	Unmodified	2479.0459	0.045863933	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							1	3	4	3	40.909	40.35	3	7.4485E-43	35002	160511_QHF_FH_JSI9i_2	195.43	191.77			1.0715	1.0418	9.5372	11	2	Median	1.1988	1.0105	NaN	1	0	Median	0.78001	0.8874	7.4888	3	0	Median	1.1367	1.133	4.8547	4	2	Median	1.0017	1.0497	2.9068	3	0	Median	1655900000	817780000	838100000	237880000	107730000	130150000	323540000	175310000	148230000	672120000	321750000	350370000	422340000	213000000	209340000	40667	2178	38273	249294;249295;249296;249297;249298;249299;249300;249301;249302;249303;249304	334291;334292;334293;334294;334295;334296;334297;334298;334299;334300;334301;334302;334303;334304;334305;334306;334307;334308;334309;334310	334302			20	
QDHPSSMGVYGQESGGFSGPGENR	0	Oxidation (M)	2495.0408	0.040778555	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	1	0		By MS/MS	By MS/MS		2	0		2									1	1		32.473	31.529	3	2.7233E-11	27694	160511_QHF_FH_JSI10i_2	96.504	95.235			0.57382	0.70774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57382	0.70774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23775000	18606000	5169600	0	0	0	23775000	18606000	5169600	0	0	0	0	0	0	40668	2178	38273	249305;249306	334311;334312	334312		1827	2	
QDIAFAYQR	0	Unmodified	1110.5458	0.54580778	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.34	5	3	2			3	3	4	1	4	6	5	6	47.216	41.523	2	1.776E-57	23130	160513_QHF_FH_JSI10Kac_4	231.2	180.24			0.92117	0.9516	10.305	21	4	Median	1.0849	0.90369	2.4627	4	0	Median	0.78867	0.9303	12.154	6	1	Median	0.92123	0.9516	9.1594	5	1	Median	0.94862	1.0403	7.7542	6	2	Median	21858000000	10572000000	11286000000	3776300000	1805800000	1970500000	3909800000	2247500000	1662300000	5661800000	2645500000	3016300000	8510100000	3873500000	4636600000	40669	870	38274	249307;249308;249309;249310;249311;249312;249313;249314;249315;249316;249317;249318;249319;249320;249321;249322;249323;249324;249325;249326;249327	334313;334314;334315;334316;334317;334318;334319;334320;334321;334322;334323;334324;334325;334326;334327;334328;334329;334330;334331;334332;334333;334334;334335;334336;334337;334338;334339;334340;334341;334342;334343;334344;334345	334322			33	
QDIAMAK	1	Unmodified	775.38982	0.38982441	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	15.578	15.12	2	0.027514	12863	160511_QHF_FH_JSI12i_1	53.554	25.448			0.7402	0.69688	13.796	4	1	Median	0.80646	0.65225	NaN	1	1	Median	0.75432	0.88974	NaN	1	0	Median	0.72634	0.71236	NaN	1	0	Median	0.65051	0.68174	NaN	1	0	Median	877880000	470270000	407610000	231200000	119720000	111480000	256910000	136720000	120180000	189800000	91759000	98037000	199980000	122070000	77913000	40670	5669	38275	249328;249329;249330;249331	334346;334347;334348	334346			3	
QDIDTQK	1	Unmodified	846.40831	0.40831125	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.1108	6.9997	2	0.006282	4685	160511_QHF_FH_JSI11i_1	92.187	49.712			0.8326	0.8147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8326	0.8147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127180000	58579000	68600000	0	0	0	0	0	0	127180000	58579000	68600000	0	0	0	40671	3896	38276	249332	334349	334349			1	
QDIEDTASDAK	1	Unmodified	1191.5255	0.52552585	1618	P48382	RFX5	DNA-binding protein RFX5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		16.739	16.619	2	0.0034221	14006	160511_QHF_FH_JSI11i_1	58.63	35.107			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40672	1618	38277	249333	334350	334350			1	
QDILEEIK	1	Unmodified	986.52843	0.52842638	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.108	53.444	2	0.0013329	48651	160511_QHF_FH_JSI12i_1	90.906	21.307			0.96107	0.77787	17.678	4	1	Linear	1.0139	0.82803	NaN	1	0	Median	0.91097	1.08	NaN	1	1	Median	1.0776	0.99946	NaN	1	0	Median	0.70637	0.73221	NaN	1	0	Median	314320000	192570000	121760000	84016000	48976000	35040000	58976000	33263000	25713000	68467000	37069000	31398000	102870000	73257000	29608000	40673	4288	38278	249334;249335;249336;249337	334351;334352;334353;334354;334355	334353			5	
QDILTIFK	1	Unmodified	976.55933	0.55933258	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.234	76.4	2	0.0040696	66958	160511_QHF_FH_JSI11i_2	69.825	38.535			1.3146	1.3334	12.828	4	1	Median	1.6191	1.3863	NaN	1	0	Median	1.0027	1.223	NaN	1	0	Median	1.2064	1.2826	NaN	1	0	Median	1.4326	1.6385	NaN	1	1	Median	121840000	48327000	73512000	21081000	7804800	13277000	27053000	13637000	13415000	38315000	12940000	25376000	35390000	13945000	21444000	40674	4881	38279	249338;249339;249340;249341	334356;334357;334358;334359	334358			4	
QDIVLTTYNILTHDYGTK	1	Unmodified	2094.0633	0.063335123	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.645	96.398	3	3.6647E-10	85220	160511_QHF_FH_JSI10i_2	133.94	124.41			0.94547	0.95729	8.2626	4	1	Linear	1.2266	1.0385	NaN	1	0	Median	0.93632	1.1382	NaN	1	1	Median	0.95471	0.95193	NaN	1	0	Median	0.84072	0.96256	NaN	1	0	Median	175930000	87277000	88650000	39505000	18589000	20916000	36912000	17561000	19351000	52347000	24837000	27510000	47163000	26290000	20873000	40675	2540	38280	249342;249343;249344;249345	334360;334361;334362;334363;334364;334365	334365			6	
QDKPLIEK	2	Unmodified	969.5495	0.54949617	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	1				By MS/MS	1.5	0.5	1	1											2	13.98	13.348	3	0.031069	10534	160511_QHF_FH_JSI12i_2	37.191	9.8622			0.65036	0.68335	4.0847	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65036	0.68335	4.0847	2	2	Median	39718000	24118000	15600000	0	0	0	0	0	0	0	0	0	39718000	24118000	15600000	40676	5445	38281	249346;249347	334366;334367	334366			2	
QDLADVVQVCEGK	1	Unmodified	1459.6977	0.69769333	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	55.804	55.143	2	3.0386E-06	50070	160511_QHF_FH_JSI12i_1	122.18	98.327			1.3924	1.4435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3924	1.4435	NaN	1	1	Median	41744000	18069000	23675000	0	0	0	0	0	0	0	0	0	41744000	18069000	23675000	40677	2517	38282	249348	334368	334368			1	
QDLAQLMNSSGSHK	1	Unmodified	1514.7147	0.71474038	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								2		1		39.563	39.104	2	4.8288E-17	34133	160511_QHF_FH_JSI9i_2	131.13	95.62			0.65885	0.66353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65885	0.66353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24763000	15815000	8948200	0	0	0	0	0	0	24763000	15815000	8948200	0	0	0	40678	4411	38283	249349;249350;249351	334369;334370;334371	334369			3	
QDLAYER	0	Unmodified	893.4243	0.42429566	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	4											2	2	15.886	15.603	2	0.0098491	13362	160511_QHF_FH_JSI12i_1	67.464	43.492			0.54134	0.54847	8.6688	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58971	0.58315	NaN	1	1	Median	0.49694	0.51586	NaN	1	1	Median	928340000	612600000	315740000	0	0	0	0	0	0	417580000	273570000	144010000	510760000	339030000	171730000	40679	5494	38284	249352;249353;249354;249355	334372;334373;334374;334375	334375			4	
QDLEAEVSQLTGEVAK	1	Unmodified	1715.8578	0.85775902	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	85.147	84.812	2	1.6794E-80	77350	160511_QHF_FH_JSI11i_1	242.07	184.72			0.97499	1.0417	15.542	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0526	1.2319	NaN	1	0	Median	0.93619	0.90305	NaN	1	0	Median	0.97499	1.0417	NaN	1	1	Median	263810000	118790000	145020000	0	0	0	92393000	43779000	48614000	79765000	37640000	42126000	91648000	37368000	54280000	40680	432	38285	249356;249357;249358;249359;249360	334376;334377;334378;334379;334380;334381;334382	334376			7	
QDLESSVQSSPHDSIAIIPPPQSTKPGR	1	Unmodified	2970.5047	0.50467783	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		59.011	58.39	4	1.1453E-05	51574	160511_QHF_FH_JSI10i_2	48.422	42.261			0.99436	0.82956	10.553	3	0	Median	0.99436	0.82956	NaN	1	0	Median	0.67237	0.80666	NaN	1	0	Median	1.0744	0.98051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	226340000	121840000	104500000	63745000	36640000	27104000	91689000	51739000	39950000	70906000	33458000	37447000	0	0	0	40681	2137	38286	249361;249362;249363	334383;334384;334385;334386;334387	334387			5	
QDLGFFQETK	1	Unmodified	1211.5823	0.58225287	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	57.357	56.608	2	0.0079167	51411	160511_QHF_FH_JSI12i_1	60.547	45.785			1.0193	0.90156	24.21	5	4	Median	1.0132	0.83119	3.4846	2	2	Median	0.76315	0.90156	NaN	1	1	Median	1.5159	1.4711	NaN	1	0	Median	1.0193	1.0747	NaN	1	1	Median	399670000	236580000	163090000	127440000	79896000	47546000	133880000	100450000	33437000	76467000	24118000	52349000	61881000	32118000	29763000	40682	2212	38287	249364;249365;249366;249367;249368	334388;334389;334390;334391;334392	334389			4	
QDLHLVLETISFILEQAVYHNVK	1	Unmodified	2708.4538	0.45375188	5724	Q9Y6G5	COMMD10	COMM domain-containing protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.2	96.479	4	1.9269E-22	57044	160513_QHF_FH_JSI10Kac_6	134.66	100.5			0.7353	0.87863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7353	0.87863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139250000	73311000	65942000	0	0	0	139250000	73311000	65942000	0	0	0	0	0	0	40683	5724	38288	249369	334393	334393			1	
QDLIHASTEK	1	Unmodified	1140.5775	0.57750184	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		18.667	18.376	2	0.00019109	14916	160511_QHF_FH_JSI11i_2	86.624	64.538			0.93905	0.90633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93905	0.90633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14571000	7078500	7492200	0	0	0	0	0	0	14571000	7078500	7492200	0	0	0	40684	3003	38289	249370;249371	334394;334395	334395			2	
QDLLAEK	1	Unmodified	815.43888	0.43888309	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS				1	0	1									1				24.162	22.935	2	0.0093075	19710	160511_QHF_FH_JSI9i_1	79.713	15.505			1.1512	0.94048	NaN	1	0	Median	1.1512	0.94048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103880000	41120000	62763000	103880000	41120000	62763000	0	0	0	0	0	0	0	0	0	40685	2048	38290	249372	334396	334396			1	
QDLLAEKVLAGK	2	Acetyl (K)	1325.7555	0.7554662	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	1	0	0	1			By MS/MS		14	0							1					1		80.263	69.572	2	0.0014541	36929	160513_QHF_FH_JSI11Kac_4	80.763	38.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4448400	4448400	0	0	0	0	0	0	0	4448400	4448400	0	0	0	0	40686	2048	38291	249373	334397	334397	2113		1	
QDLLAYLQR	0	Unmodified	1118.6084	0.60840804	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	72.632	71.952	2	8.6411E-12	63099	160511_QHF_FH_JSI11i_2	166.3	105.82			0.88347	0.90444	7.8921	6	0	Median	1.1071	0.93988	NaN	1	0	Median	0.72417	0.8694	0.15423	2	0	Median	0.93093	0.92513	13.329	2	0	Median	0.89114	0.99696	NaN	1	0	Median	729220000	377100000	352120000	139280000	64323000	74954000	202630000	110220000	92413000	223520000	108750000	114770000	163790000	93807000	69979000	40687	1421;1272	38292	249374;249375;249376;249377;249378;249379	334398;334399;334400;334401;334402;334403;334404;334405;334406;334407;334408	334406			10	
QDLLTAAPASEIAEGLNLHTIR	0	Unmodified	2332.2387	0.23867373	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			95.612	95.406	3	0.0034257	84497	160511_QHF_FH_JSI10i_2	50.323	40.474			1.1204	1.1277	0.069744	2	0	Median	1.336	1.1283	NaN	1	0	Median	0.93962	1.1272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118550000	64684000	53862000	53766000	22163000	31603000	64779000	42521000	22259000	0	0	0	0	0	0	40688	1451	38293	249380;249381	334409	334409			0	
QDLLTAAPASEIAEGLNLHTIRDR	0	Unmodified	2603.3667	0.36672779	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			89.482	88.401	4	0.053624	73903	160511_QHF_FH_JSI10i_3	17.762	10.05			0.77223	0.93968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77223	0.93968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6287300	3347500	2939800	0	0	0	6287300	3347500	2939800	0	0	0	0	0	0	40689	1451	38294	249382	334410	334410			1	
QDLLVASLFR	0	Unmodified	1160.6554	0.65535823	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.124	90.608	2	0.054026	79677	160511_QHF_FH_JSI11i_2	42.336	25.498			2.2843	2.2262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2843	2.2262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6562300	2207700	4354600	0	0	0	0	0	0	6562300	2207700	4354600	0	0	0	40690	3497	38295	249383	334411	334411			1	
QDLMNIAGTTLSSK	1	Unmodified	1477.7446	0.74464352	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	66.764	66.125	2	3.4417E-06	60135	160511_QHF_FH_JSI11i_1	131.79	113.01			0.95264	0.93413	24.251	7	7	Median	1.4051	1.1653	13.423	2	2	Median	0.58885	0.69984	NaN	1	1	Median	0.905	0.86813	6.0294	2	2	Median	1.0868	1.1434	28.587	2	2	Median	474050000	236670000	237380000	194870000	86734000	108130000	59731000	37620000	22111000	123450000	63686000	59766000	96003000	48629000	47374000	40691	2090	38296	249384;249385;249386;249387;249388;249389;249390	334412;334413;334414;334415;334416;334417;334418;334419;334420;334421	334413			10	
QDLPALEEK	1	Unmodified	1041.5342	0.53424004	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				2		1	2	48.048	38.841	2	0.0001856	33696	160511_QHF_FH_JSI9i_1	91.636	67.117			0.99792	1.0251	0.075903	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0444	1.0245	NaN	1	0	Median	0.95347	1.0256	NaN	1	0	Median	9343900	4526800	4817200	0	0	0	0	0	0	5062400	2273400	2789100	4281500	2253400	2028100	40692	1417	38297	249391;249392;249393;249394;249395	334422;334423;334424;334425;334426	334424			5	
QDLPALEEKPR	1	Unmodified	1294.6881	0.68811492	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	3.15	2	11					1			3	3	5	3	35.76	34.059	2;3	3.1227E-05	30646	160511_QHF_FH_JSI11i_1	88.021	75.013			0.96475	0.95404	21.139	11	3	Median	0.93847	0.81608	5.4743	2	0	Median	0.76813	0.94921	38.238	3	3	Median	1.0576	1.0832	12.849	3	0	Plateau	0.96475	1.0468	12.044	3	0	Median	1111700000	569890000	541810000	205590000	104910000	100680000	225190000	117870000	107320000	478520000	223180000	255340000	202390000	123930000	78464000	40693	1417	38298	249396;249397;249398;249399;249400;249401;249402;249403;249404;249405;249406;249407;249408;249409	334427;334428;334429;334430;334431;334432;334433;334434;334435;334436;334437;334438;334439;334440;334441;334442;334443;334444	334428			18	
QDLPDAMKPHEIQEK	2	Unmodified	1777.8669	0.86688392	2005	P62330	ARF6	ADP-ribosylation factor 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	37.715	36.764	3;4	4.439E-05	31324	160511_QHF_FH_JSI11i_2	102.78	70.042			0.96912	1.023	15.727	8	0	Median	1.1718	1.0076	19.565	2	0	Median	0.81026	0.97968	7.0486	2	0	Median	0.96751	0.95699	8.5047	2	0	Median	1.0759	1.2362	19.986	2	0	Median	771260000	390710000	380550000	136790000	67521000	69274000	195370000	118600000	76762000	237700000	104120000	133590000	201400000	100470000	100930000	40694	2005	38299	249410;249411;249412;249413;249414;249415;249416;249417;249418	334445;334446;334447;334448;334449;334450;334451;334452;334453;334454;334455;334456	334452			12	
QDLPGALSSNAIR	0	Unmodified	1340.7048	0.70482762	1450	P36404	ARL2	ADP-ribosylation factor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.008	51.336	2	0.00019632	46398	160511_QHF_FH_JSI11i_1	80.871	38.583			0.97819	0.96218	10.142	4	0	Median	1.2373	1.0036	NaN	1	0	Median	0.68189	0.79985	NaN	1	0	Median	1.0137	0.9657	NaN	1	0	Median	0.94396	0.95867	NaN	1	0	Median	503620000	274620000	228990000	174360000	85441000	88917000	93041000	60822000	32219000	107160000	57779000	49377000	129060000	70581000	58482000	40695	1450	38300	249419;249420;249421;249422	334457;334458;334459;334460;334461;334462;334463;334464	334458			8	
QDLPNAMAISEMTDK	1	Oxidation (M)	1678.7542	0.75422193	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	63.369	62.825	2	0.01219	57161	160511_QHF_FH_JSI12i_1	66.393	52.487			1.3295	1.3306	13.034	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5267	1.4591	NaN	1	1	Median	1.1578	1.2135	NaN	1	1	Median	60329000	25875000	34454000	0	0	0	0	0	0	30751000	15845000	14906000	29578000	10030000	19548000	40696	1137	38301	249423;249424	334465;334466	334466		764	2	
QDLPNAMAISEMTDK	1	Unmodified	1662.7593	0.75930731	1137	P18085	ARF4	ADP-ribosylation factor 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	3	1	70.75	70.245	2;3	1.239E-12	62444	160511_QHF_FH_JSI9i_1	194.12	171.48			1.0463	1.0334	6.3078	8	7	Median	1.26	1.0334	2.4021	2	2	Median	0.8733	1.0354	9.1577	2	1	Median	1.1667	1.1379	8.9975	3	3	Plateau	1.0707	1.09	NaN	1	1	Median	2456700000	995640000	1461100000	663050000	314570000	348480000	688790000	287320000	401470000	1021900000	363450000	658470000	82957000	30303000	52654000	40697	1137	38301	249425;249426;249427;249428;249429;249430;249431;249432	334467;334468;334469;334470;334471;334472;334473;334474;334475	334474			9	
QDLPNAMNAAEITDK	1	Unmodified	1629.7668	0.76683553	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.891	8		3							3	4	2	2	58.423	57.676	2;3	1.2974E-80	52255	160511_QHF_FH_JSI10i_1	242.07	219.98			0.98815	0.98642	13.674	9	1	Median	1.1517	0.94817	2.0696	2	0	Median	0.89308	1.0702	24.474	3	1	Plateau	1.041	1.0157	2.3702	2	0	Median	0.96005	1.003	2.3531	2	0	Median	10779000000	5148300000	5630900000	3028000000	1251300000	1776600000	2239900000	1278100000	961820000	2411100000	1146600000	1264500000	3100200000	1472300000	1627900000	40698	1944;2125	38302	249433;249434;249435;249436;249437;249438;249439;249440;249441;249442;249443	334476;334477;334478;334479;334480;334481;334482;334483;334484;334485;334486;334487;334488;334489;334490;334491;334492;334493;334494;334495;334496;334497;334498;334499;334500;334501;334502;334503	334493			28	
QDLPNAMNAAEITDK	1	Oxidation (M)	1645.7618	0.76175015	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	7.27	5.74	5				3	3				2	1	5	3	52.145	45.589	2	3.3914E-07	40923	160511_QHF_FH_JSI11i_1	134.61	114.31			1.0036	1.0044	41.666	9	3	Median	1.763	1.4357	NaN	1	1	Median	0.54686	0.62389	NaN	1	0	Median	0.98365	0.94448	47.991	4	1	Median	1.7927	1.8842	34.962	3	1	Plateau	460950000	169140000	291800000	134680000	53144000	81539000	1743400	1017700	725760	154360000	52359000	102000000	170160000	62624000	107540000	40699	1944;2125	38302	249444;249445;249446;249447;249448;249449;249450;249451;249452;249453;249454	334504;334505;334506;334507;334508;334509;334510;334511;334512;334513;334514	334504		1614	11	
QDLPPLDEKPR	1	Unmodified	1306.6881	0.68811492	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			35.328	34.975	3	0.002022	31243	160511_QHF_FH_JSI10i_1	62.338	52.551			1.0575	1.2448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0575	1.2448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52473000	24368000	28105000	0	0	0	52473000	24368000	28105000	0	0	0	0	0	0	40700	723	38303	249455	334515	334515			1	
QDLPSLDEK	1	Unmodified	1043.5135	0.5135046	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.16	5	1				1				2	1	3	1	39.77	37.886	2	2.6129E-05	34108	160511_QHF_FH_JSI11i_1	104.2	54.775			0.92276	1.0699	47.585	7	3	Median	1.507	1.2805	97.93	2	1	Median	0.92276	1.0699	NaN	1	0	Median	1.2082	1.1857	37.785	3	1	Median	0.84645	0.87453	NaN	1	1	Median	530530000	242880000	287660000	110910000	39500000	71412000	101850000	60044000	41810000	215230000	89257000	125970000	102530000	54075000	48459000	40701	3852	38304	249456;249457;249458;249459;249460;249461;249462	334516;334517;334518;334519;334520;334521	334516			5	
QDLPSLDEKPR	1	Unmodified	1296.6674	0.66737948	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.73	3.6	4	6					1			3	3	4	1	35.213	34.514	2;3	0.00017663	30863	160511_QHF_FH_JSI10i_1	71.176	55.974			1.0157	1.0245	14.623	8	1	Median	1.3116	1.1103	8.6928	2	0	Median	0.69998	0.83673	11.64	2	0	Median	0.98432	0.98474	12.634	3	1	Plateau	0.99524	1.0217	NaN	1	0	Median	703940000	346330000	357620000	152220000	66337000	85886000	219620000	120870000	98745000	235230000	110550000	124680000	96874000	48566000	48308000	40702	3852	38305	249463;249464;249465;249466;249467;249468;249469;249470;249471;249472;249473	334522;334523;334524;334525;334526;334527;334528;334529;334530;334531	334524			10	
QDLSAIAR	0	Unmodified	872.47158	0.4715802	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.825	26.238	2	0.001572	23212	160511_QHF_FH_JSI10i_1	87.696	32.02			0.99693	1.0112	13.158	3	0	Median	0.99693	0.81362	NaN	1	0	Median	0.89698	1.0314	NaN	1	0	Median	1.0407	1.0112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	339410000	180260000	159140000	131220000	67520000	63695000	120340000	70054000	50286000	87852000	42689000	45163000	0	0	0	40703	5261	38306	249474;249475;249476;249477	334532;334533;334534;334535;334536	334534			5	
QDLTTLDVTK	1	Unmodified	1132.5976	0.59756858	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	49.206	44.809	2	5.4816E-06	24108	160513_QHF_FH_JSI12Kac_3	114.4	85.674			0.79061	0.81202	28.459	7	1	Median	1.7923	1.4843	NaN	1	1	Median	0.82876	0.97973	36.349	2	0	Median	0.77708	0.76284	8.8368	2	0	Median	0.74651	0.80483	5.9764	2	0	Median	2691100000	1363300000	1327800000	498400000	241020000	257380000	742570000	388540000	354030000	723070000	373430000	349640000	727070000	360300000	366770000	40704	1508	38307	249478;249479;249480;249481;249482;249483;249484;249485	334537;334538;334539;334540;334541;334542;334543;334544;334545;334546;334547	334546			11	
QDLYMWLSNSPHGPSAK	1	Unmodified	1929.9043	0.90433206	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	1	2	3	4	70.623	66.72	3	4.3367E-17	36346	160513_QHF_FH_JSI10Kac_6	141.22	124.47			0.96108	0.97796	15.668	10	6	Median	1.1495	0.97427	NaN	1	1	Median	0.81447	0.99331	4.9485	2	0	Median	0.98146	0.97949	7.9255	3	2	Median	0.95272	1.0311	23.919	4	3	Median	589090000	277050000	312040000	40594000	15271000	25323000	155630000	84821000	70811000	168390000	82402000	85987000	224480000	94552000	129920000	40705	3723	38308	249486;249487;249488;249489;249490;249491;249492;249493;249494;249495	334548;334549;334550;334551;334552;334553;334554;334555;334556;334557;334558	334558			11	
QDLYPALK	1	Unmodified	946.51238	0.51238239	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.609	42.839	2	0.0012187	38843	160511_QHF_FH_JSI12i_1	92.439	57.632			0.97953	1.0361	31.754	5	1	Median	1.1271	0.93142	61.971	2	1	Median	0.91103	1.086	NaN	1	0	Median	1.0496	1.0361	NaN	1	0	Median	0.97953	1.0345	NaN	1	0	Median	900880000	423590000	477290000	267600000	125070000	142530000	188290000	97487000	90800000	231800000	105000000	126800000	213190000	96028000	117160000	40706	2701	38309	249496;249497;249498;249499;249500	334559;334560;334561;334562;334563;334564;334565	334561			7	
QDMEQAMTSSEMANSLGLPALK	1	Unmodified	2351.0807	0.080717801	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									4	2	2	3	92.259	91.787	2;3	3.4709E-58	83534	160511_QHF_FH_JSI12i_1	256.18	242.5			1.0799	0.96541	24.476	11	5	Median	1.1572	0.94475	26.047	4	3	Median	0.9842	1.1407	15.525	2	0	Median	0.95345	0.92483	17.211	2	0	Median	0.89438	0.90441	38.028	3	2	Median	671800000	326480000	345320000	190520000	75506000	115020000	128780000	71318000	57458000	189860000	91624000	98238000	162640000	88034000	74603000	40707	1498	38310	249501;249502;249503;249504;249505;249506;249507;249508;249509;249510;249511	334566;334567;334568;334569;334570;334571;334572;334573;334574;334575;334576;334577;334578;334579;334580;334581;334582;334583;334584;334585	334576			20	
QDMGEEAEEEPQK	1	Unmodified	1518.6144	0.61441721	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	18.368	17.748	2	4.3991E-06	15070	160511_QHF_FH_JSI11i_1	124.42	117.89			1.0435	0.91621	20.391	5	5	Median	1.0404	0.8476	0.045448	2	2	Median	1.0987	1.246	NaN	1	1	Median	0.95971	0.91621	NaN	1	1	Median	1.262	1.2667	NaN	1	1	Median	131050000	58004000	73043000	57133000	25394000	31739000	23547000	5567700	17979000	22796000	12209000	10587000	27570000	14833000	12737000	40708	339	38311	249512;249513;249514;249515;249516	334586;334587;334588;334589;334590	334586			5	
QDMPNAMPVSELTDK	1	Unmodified	1674.7593	0.75930731	2126	P84085	ARF5	ADP-ribosylation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	63.881	63.256	2	7.1865E-10	56126	160511_QHF_FH_JSI9i_1	148.62	129.87			0.99981	1.0227	8.6595	4	0	Median	1.263	1.0397	NaN	1	0	Median	0.99207	1.175	NaN	1	0	Median	1.0076	0.95933	NaN	1	0	Median	0.9438	1.006	NaN	1	0	Median	1209800000	621050000	588720000	317070000	138540000	178530000	229870000	117370000	112500000	317850000	180570000	137290000	344990000	184580000	160410000	40709	2126	38312	249517;249518;249519;249520;249521	334591;334592;334593;334594;334595;334596;334597;334598;334599;334600;334601;334602	334602			12	
QDMPSEDVVSLQVSLINLAMK	1	Unmodified	2316.1705	0.17051909	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			102.31	102.28	3	0.0056198	93060	160511_QHF_FH_JSI10i_1	35.992	26.946			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27922000	27922000	0	0	0	0	27922000	27922000	0	0	0	0	0	0	0	40710	4212	38313	249522	334603	334603			1	
QDNIAVK	1	Unmodified	786.42357	0.42356738	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.496	11.092	2	0.015056	8482	160511_QHF_FH_JSI9i_1	65.252	35.067			0.81717	0.95141	8.0373	4	0	Linear	1.0649	0.86937	NaN	1	0	Median	0.78952	0.92834	NaN	1	0	Median	0.787	0.76793	NaN	1	0	Median	0.84579	0.8812	NaN	1	0	Median	580180000	321560000	258620000	136860000	66713000	70146000	171750000	100160000	71594000	123160000	73338000	49819000	148410000	81346000	67065000	40711	179	38314	249523;249524;249525;249526	334604;334605;334606;334607	334607			4	
QDNLTIDTQYYLAQQIHPVVAR	0	Unmodified	2585.3238	0.32380034	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.441	84.847	3	0.000112	74701	160511_QHF_FH_JSI11i_2	52.03	44.497			0.73061	0.72823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73061	0.72823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30653000	14866000	15787000	0	0	0	0	0	0	30653000	14866000	15787000	0	0	0	40712	940	38315	249527	334608	334608			1	
QDNPKLDSMR	1	Acetyl (K);Oxidation (M)	1260.5768	0.57684991	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					1	1	2	22.498	15.243	2	9.0598E-05	9534	160513_QHF_FH_JSI12Kac_3	98.943	49.525			0.94313	1.0679	6.962	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89803	1.0668	NaN	1	0	Median	1.1786	1.1346	NaN	1	0	Median	0.93755	1.0128	7.615	2	0	Median	32255000	16693000	15562000	0	0	0	8558600	4876000	3682700	7173400	3484400	3689000	16523000	8332200	8190700	40713	3059	38316	249528;249529;249530;249531	334609;334610;334611;334612;334613;334614;334615	334612	2750	2183	7	
QDNPKLDSMR	1	Acetyl (K)	1244.5819	0.58193529	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	38.152	29.348	2	0.0034573	16669	160513_QHF_FH_JSI12Kac_3	74.944	63.454			1.0562	1.1725	9.8736	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94146	1.1164	NaN	1	0	Median	1.3934	1.3502	NaN	1	0	Median	1.0562	1.1725	NaN	1	0	Median	35298000	17161000	18136000	0	0	0	12886000	6610500	6275600	7438600	3300500	4138100	14973000	7250100	7722800	40714	3059	38316	249532;249533;249534	334616;334617;334618	334617	2750		3	
QDNYNEEVADLK	1	Unmodified	1436.642	0.64195259	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	39.196	38.591	2	0.0013942	34665	160511_QHF_FH_JSI11i_1	65.241	50.943			0.81263	0.8344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81263	0.8344	NaN	1	1	Median	54457000	28227000	26230000	0	0	0	0	0	0	0	0	0	54457000	28227000	26230000	40715	3516	38317	249535;249536	334619;334620	334619			2	
QDPGDNWEEGGGGGGGMEK	1	Unmodified	1875.733	0.73296922	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			33.068	32.728	2	5.7162E-05	29235	160511_QHF_FH_JSI10i_1	76.262	68.351			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40716	5383	38318	249537	334621	334621			1	
QDPGTDRTEDSGLAAGPPEAAGENFAPCSVAPGK	1	Unmodified	3368.5215	0.52152646	4010	Q96CP2	FLYWCH2	FLYWCH family member 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	62.238	61.747	3	1.9547E-39	55792	160511_QHF_FH_JSI10i_1	128.86	118.05			0.86187	0.84401	30.36	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0669	1.2642	NaN	1	0	Median	0.86187	0.83511	NaN	1	0	Median	1.4465	1.5088	NaN	1	0	Median	173900000	89106000	84789000	0	0	0	53091000	27496000	25594000	78800000	44267000	34533000	42004000	17343000	24661000	40717	4010	38319	249538;249539;249540	334622;334623;334624;334625;334626;334627;334628;334629	334629			8	
QDPSVLHTEEMR	0	Unmodified	1440.6667	0.66672755	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.83	9	12	4				3			8	8	7	5	30.704	28.873	2;3	1.0998E-41	24277	160511_QHF_FH_JSI12i_2	203.61	187.98			0.88747	0.97484	30.03	26	9	Median	1.279	1.0954	33.007	7	4	Median	0.78707	0.97775	19.248	7	2	Median	0.99295	0.97193	42.075	7	3	Median	0.87715	0.94663	14.297	5	0	Median	5007900000	2398600000	2609400000	829210000	346300000	482910000	1321100000	705710000	615430000	1690800000	766360000	924410000	1166800000	580180000	586640000	40718	1707	38320	249541;249542;249543;249544;249545;249546;249547;249548;249549;249550;249551;249552;249553;249554;249555;249556;249557;249558;249559;249560;249561;249562;249563;249564;249565;249566;249567;249568	334630;334631;334632;334633;334634;334635;334636;334637;334638;334639;334640;334641;334642;334643;334644;334645;334646;334647;334648;334649;334650;334651;334652;334653;334654;334655;334656;334657;334658;334659;334660;334661;334662;334663;334664;334665;334666;334667;334668;334669;334670;334671	334636			42	
QDPSVLHTEEMR	0	Oxidation (M)	1456.6616	0.66164217	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	4.09	4.93	2	7					1	1		3		5	3	27.464	26.034	2;3	4.6562E-05	25785	160511_QHF_FH_JSI11i_1	82.543	64.799			1.0571	1.0376	35.595	10	0	Median	0.85346	0.74665	34.297	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1377	1.1313	35.797	5	0	Median	1.0569	1.179	31.467	3	0	Median	479810000	244620000	235190000	97368000	51690000	45678000	0	0	0	242920000	125090000	117840000	139520000	67843000	71679000	40719	1707	38320	249569;249570;249571;249572;249573;249574;249575;249576;249577;249578;249579	334672;334673;334674;334675;334676;334677;334678;334679;334680;334681	334672		1387	10	
QDQIQQVVNHGLVPFLVSVLSK	1	Unmodified	2447.3536	0.35364391	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	2	2	2	4	101.98	100.08	3;4	3.4694E-58	91737	160511_QHF_FH_JSI11i_3	218.87	197.98			0.9535	0.90157	14.14	10	1	Median	0.9535	0.80905	5.9938	2	1	Median	0.67537	0.80073	7.4475	2	0	Median	1.0088	0.95768	5.1707	2	0	Median	0.9528	0.99511	13.955	4	0	Median	1605300000	852670000	752660000	142870000	81834000	61037000	105270000	62199000	43068000	715610000	357190000	358430000	641580000	351450000	290130000	40720	1766	38321	249580;249581;249582;249583;249584;249585;249586;249587;249588;249589	334682;334683;334684;334685;334686;334687;334688;334689;334690;334691;334692;334693;334694;334695;334696;334697	334682			16	
QDQISGLSQSEVK	1	Unmodified	1417.7049	0.7048872	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.174	33.57	2	1.0918E-15	30027	160511_QHF_FH_JSI11i_1	165.58	114.52			0.95525	0.89472	8.9916	4	0	Median	0.97788	0.81707	NaN	1	0	Median	0.76978	0.8871	NaN	1	0	Median	0.93314	0.90239	NaN	1	0	Median	0.98609	1.0162	NaN	1	0	Median	314260000	163130000	151130000	79151000	36150000	43002000	85663000	56848000	28815000	78247000	33314000	44933000	71194000	36814000	34380000	40721	4290	38322	249590;249591;249592;249593	334698;334699;334700;334701;334702;334703	334698			6	
QDQSIILLGSSGSGK	1	Unmodified	1488.7784	0.77838649	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				55.153	53.976	2	6.3278E-05	47989	160511_QHF_FH_JSI9i_1	75.911	60.939			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40722	3858	38323	249594	334704	334704			1	
QDQVCIAR	0	Unmodified	988.47601	0.47601365	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.545	16.072	2	0.00023757	13581	160511_QHF_FH_JSI10i_1	117.4	90.145			1.3281	1.3403	18.463	4	0	Median	2.0351	1.6913	NaN	1	0	Median	0.97407	1.15	NaN	1	0	Median	1.2306	1.1951	NaN	1	0	Median	1.4333	1.5031	NaN	1	0	Median	958910000	481580000	477330000	165910000	66942000	98969000	257770000	139100000	118670000	291570000	163070000	128500000	243650000	112470000	131190000	40723	1069;3467	38324	249595;249596;249597;249598	334705;334706;334707;334708;334709	334708			5	
QDQVLDVSGADMLAK	1	Unmodified	1588.7767	0.77667193	4457	Q9BV23	ABHD6	Monoacylglycerol lipase ABHD6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		68.002	67.645	2	0.00067419	61233	160511_QHF_FH_JSI10i_1	68.809	57.346			1.8162	1.9314	0.97433	2	1	Median	NaN	NaN	NaN	0	0	Median	1.64	1.9447	NaN	1	0	Median	2.0113	1.9181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72900000	29238000	43662000	0	0	0	43062000	18973000	24089000	29839000	10266000	19573000	0	0	0	40724	4457	38325	249599;249600	334710;334711	334711			2	
QDRTLTIVDTGIGMTK	1	Unmodified	1747.9138	0.91383411	880;2872	P07900;Q58FG1	HSP90AA1;HSP90AA4P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4	no	no	0	0	0	1	By MS/MS				2	0		1								1				62.903	61.958	3	0.035488	54526	160511_QHF_FH_JSI9i_2	35.202	24.568			0.42003	0.36671	NaN	1	1	Median	0.42003	0.36671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104700000	75259000	29446000	104700000	75259000	29446000	0	0	0	0	0	0	0	0	0	40725	880;2872	38326	249601	334712	334712			1	
QDSAAVGFDYK	1	Unmodified	1199.5459	0.54586736	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			37.598	37.228	2	0.00022533	33414	160511_QHF_FH_JSI10i_1	86.114	66.843			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40726	2522	38327	249602;249603	334713;334714	334714			2	
QDSLVINLNR	0	Unmodified	1170.6357	0.63568542	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	53.092	52.512	2	1.0649E-06	47690	160511_QHF_FH_JSI12i_1	126.07	96.981			1.0532	1.0512	4.8837	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	0.98493	NaN	1	1	Median	1.0201	1.0512	4.4126	2	2	Median	274180000	129750000	144420000	0	0	0	0	0	0	70212000	32304000	37908000	203970000	97450000	106520000	40727	5658	38328	249604;249605;249606	334715;334716;334717	334716			3	
QDSSTGSYSINFVQNPNNNR	0	Unmodified	2241.0047	0.0046510456	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	53.875	53.211	2	1.4013E-78	47227	160511_QHF_FH_JSI9i_1	280.5	262.8			1.4445	1.3269	62.886	4	4	Median	2.5631	2.0638	NaN	1	1	Median	2.4131	2.8497	NaN	1	1	Median	0.86461	0.81978	NaN	1	1	Median	0.81393	0.85309	NaN	1	1	Median	81914000	38387000	43527000	20225000	4963300	15261000	15450000	4202700	11248000	25171000	16865000	8306200	21069000	12357000	8711900	40728	4293	38329	249607;249608;249609;249610;249611	334718;334719;334720;334721;334722	334722			5	
QDTFSGTGFFPLDR	0	Unmodified	1586.7365	0.73652168	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		82.138	81.982	2	3.7241E-06	72077	160511_QHF_FH_JSI11i_2	87.363	61.977			1.1013	1.2783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1013	1.2783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14451000	7902700	6548800	0	0	0	14451000	7902700	6548800	0	0	0	0	0	0	40729	5626	38330	249612;249613	334723;334724	334724			2	
QDTITEESEK	1	Unmodified	1178.5303	0.53027687	624	O94913	PCF11	Pre-mRNA cleavage complex 2 protein Pcf11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.164	11.909	2	0.00024458	9590	160511_QHF_FH_JSI11i_1	91.636	42.842			1.1398	1.1552	52.992	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82637	0.79417	NaN	1	1	Median	1.572	1.6803	NaN	1	0	Median	56266000	22035000	34231000	0	0	0	13232000	0	13232000	20133000	9186600	10947000	22901000	12849000	10052000	40730	624	38331	249614;249615;249616	334725;334726;334727	334725			3	
QDTLVALR	0	Unmodified	914.51853	0.5185304	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1.5	0.5	1	1										1	1	38.134	37.609	2	0.019076	34234	160511_QHF_FH_JSI12i_1	47.082	8.1193			1.119	1.1446	5.2363	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1604	1.1878	NaN	1	0	Median	1.0791	1.103	NaN	1	0	Median	336910000	158950000	177960000	0	0	0	0	0	0	279780000	131190000	148590000	57137000	27767000	29370000	40731	4255	38332	249617;249618	334728	334728			1	
QDTQAPVVPYWR	0	Unmodified	1458.7256	0.72556306	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.119	59.727	2	0.00049677	53999	160511_QHF_FH_JSI10i_1	85.622	68.709			1.433	1.6905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.433	1.6905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52634000	23150000	29484000	0	0	0	52634000	23150000	29484000	0	0	0	0	0	0	40732	3862	38333	249619	334729	334729			1	
QDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGK	1	Unmodified	3978.9083	0.90829763	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			89.009	88.538	4	6.5626E-09	78726	160511_QHF_FH_JSI10i_2	53.728	49.106			0.76686	0.80346	63.56	2	2	Median	0.59035	0.5126	NaN	1	1	Median	0.99616	1.2594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26657000	15075000	11582000	14949000	11094000	3855300	11707000	3980700	7726800	0	0	0	0	0	0	40733	4161	38334	249620;249621	334730;334731	334731			2	
QDVDDEYGVSQALAR	0	Unmodified	1664.7642	0.76419299	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.893	51.397	2	1.0048E-51	46335	160511_QHF_FH_JSI10i_1	215.51	186.71			0.94038	1.0086	18.722	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81892	0.99362	NaN	1	0	Median	1.0799	1.013	NaN	1	0	Median	0.70065	0.72572	NaN	1	0	Median	187240000	96683000	90553000	0	0	0	66544000	33869000	32675000	67019000	27959000	39060000	53673000	34856000	18818000	40734	1737	38335	249622;249623;249624	334732;334733;334734	334734			2	
QDVDNASLAR	0	Unmodified	1087.5258	0.52580062	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	19.281	15.867	2	2.0595E-06	13519	160511_QHF_FH_JSI9i_1	134.59	94.323			1.1249	1.101	17.124	7	5	Median	1.1793	0.96017	NaN	1	1	Median	0.9387	1.0945	29.419	2	2	Median	1.1308	1.1147	1.7567	2	1	Median	1.1692	1.2578	19.338	2	1	Median	997680000	376960000	620720000	224680000	88259000	136420000	267920000	96028000	171890000	241780000	90713000	151070000	263300000	101960000	161340000	40735	913	38336	249625;249626;249627;249628;249629;249630;249631	334735;334736;334737;334738;334739;334740	334739			6	
QDVINTLLPK	1	Unmodified	1139.655	0.65502388	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	66.755	66.065	2	0.0090168	60026	160511_QHF_FH_JSI11i_1	49.489	44.33			1.0191	0.94006	12.684	3	0	Plateau	1.0496	0.85002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98951	0.94006	NaN	1	0	Median	1.0512	1.0936	NaN	1	0	Median	69451000	37286000	32165000	24482000	11751000	12731000	0	0	0	25256000	14137000	11119000	19713000	11397000	8315300	40736	232	38337	249632;249633;249634	334741;334742;334743	334741			3	
QDVPKPVLTSVMVPK	2	Unmodified	1636.9222	0.92221396	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.127	63.84	3	0.0073861	55091	160511_QHF_FH_JSI12i_3	44.005	36.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40737	4413	38338	249635	334744	334744			1	
QDVPSSLEDALK	1	Unmodified	1300.6511	0.65106071	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	63.434	62.578	2	0.00033315	57048	160511_QHF_FH_JSI12i_1	72.096	51.225			1.4284	1.3363	17.94	2	1	Median	1.4244	1.1771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4324	1.517	NaN	1	0	Median	72436000	30359000	42077000	27193000	11675000	15518000	0	0	0	0	0	0	45243000	18684000	26559000	40738	1716	38339	249636;249637	334745;334746;334747	334746			3	
QDVVLIK	1	Unmodified	813.496	0.49600404	5458;2199	Q9UPN3;Q03001	MACF1;DST	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin	no	no	0	0	0	0				By MS/MS	1	0	1												1	38.062	37.463	2	0.029577	34004	160511_QHF_FH_JSI12i_1	54.611	21.061			0.62911	0.63118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62911	0.63118	NaN	1	1	Median	27397000	12607000	14790000	0	0	0	0	0	0	0	0	0	27397000	12607000	14790000	40739	5458;2199	38340	249638	334748	334748			1	
QDVVLNYPM	0	Unmodified	1077.5165	0.51648149	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.382	70.85	2	0.0002328	63066	160511_QHF_FH_JSI9i_1	84.568	80.996			1.1301	1.0603	7.3633	4	0	Median	1.245	1.012	NaN	1	0	Median	0.84772	0.99026	NaN	1	0	Median	1.1591	1.1109	NaN	1	0	Median	1.1018	1.155	NaN	1	0	Median	189610000	93034000	96574000	55185000	25345000	29840000	38084000	22883000	15201000	47626000	21770000	25857000	48714000	23037000	25677000	40740	2609	38341	249639;249640;249641;249642	334749;334750;334751;334752;334753;334754;334755	334755			7	
QDVVNWLNEEK	1	Unmodified	1372.6623	0.6622941	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.861	62.227	2	3.7413E-06	56696	160511_QHF_FH_JSI12i_1	116.74	96.975			0.99156	1.057	12.694	4	4	Median	1.5115	1.2209	NaN	1	1	Median	0.8931	1.0399	NaN	1	1	Median	0.94259	0.89649	NaN	1	1	Median	1.0431	1.0744	NaN	1	1	Median	213670000	100710000	112960000	49775000	18278000	31497000	41205000	22998000	18207000	51357000	22732000	28625000	71335000	36705000	34630000	40741	5460	38342	249643;249644;249645;249646	334756;334757;334758;334759	334757			4	
QDVYDLLK	1	Unmodified	992.51786	0.51786169	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	1	2	63.631	60.987	2	0.0014714	54187	160511_QHF_FH_JSI9i_1	96.948	62.14			0.97418	1.0136	9.9731	5	0	Median	1.0908	0.90926	NaN	1	0	Median	0.97418	1.1306	NaN	1	0	Median	0.96627	0.94226	NaN	1	0	Median	0.99038	1.068	7.3958	2	0	Median	952030000	485380000	466650000	212090000	98881000	113210000	208290000	106430000	101860000	258670000	147010000	111650000	272980000	133050000	139930000	40742	4272	38343	249647;249648;249649;249650;249651;249652	334760;334761;334762;334763;334764;334765;334766;334767	334766			8	
QDVYLLPK	1	Unmodified	974.54368	0.54368251	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	52.985	50.606	2	0.00046728	45299	160511_QHF_FH_JSI10i_1	107.29	89.259			1.0861	1.1597	7.277	5	1	Median	1.2238	1.0185	NaN	1	0	Median	1.0293	1.2122	NaN	1	0	Median	1.1828	1.1597	NaN	1	0	Median	1.0449	1.1106	6.7415	2	1	Median	806730000	406250000	400490000	163640000	68513000	95130000	193210000	108400000	84812000	222820000	107410000	115410000	227060000	121930000	105130000	40743	389	38344	249653;249654;249655;249656;249657	334768;334769;334770;334771;334772;334773;334774;334775;334776	334773			9	
QDWEHAANDVSFATIR	0	Unmodified	1858.8598	0.85982471	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	65.781	64.883	3	0.00013564	56620	160511_QHF_FH_JSI11i_2	66.201	61.81			0.82833	1.0038	11.7	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8271	1.025	NaN	1	0	Median	0.82833	0.82896	NaN	1	0	Median	0.89819	1.0038	NaN	1	0	Median	194990000	105650000	89341000	0	0	0	61217000	30721000	30496000	103400000	59607000	43793000	30375000	15322000	15052000	40744	1528	38345	249658;249659;249660	334777;334778	334777			2	
QDWLILHIPDAHLWVK	1	Unmodified	1983.0731	0.073052369	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	2	1	91.097	83.237	2;3;4	1.7513E-32	48129	160513_QHF_FH_JSI10Kac_6	200.55	163.7			0.86498	1.0174	20.545	8	0	Median	0.98222	0.8545	26.237	2	0	Median	0.87241	1.0381	9.871	3	0	Plateau	0.9675	0.91067	18.038	2	0	Median	1.3252	1.3998	NaN	1	0	Median	1036700000	534920000	501730000	123400000	62436000	60965000	535090000	270460000	264640000	299100000	161950000	137150000	79057000	40084000	38974000	40745	1733	38346	249661;249662;249663;249664;249665;249666;249667;249668	334779;334780;334781;334782;334783;334784;334785;334786;334787;334788;334789;334790;334791;334792;334793	334793			15	
QDWVDGEPTEAEK	1	Unmodified	1502.6525	0.65251728	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.91	5				1	4				1	2	3	4	40.693	36.886	2	1.0238E-22	32916	160511_QHF_FH_JSI9i_1	181.31	134.05			0.84942	0.94691	10.142	8	3	Median	1.2352	0.99953	NaN	1	0	Median	0.79529	0.94691	2.2527	2	0	Median	0.84535	0.82158	6.0248	2	1	Median	0.93933	1.0331	11.62	3	2	Median	2640100000	1312500000	1327600000	401930000	175730000	226200000	580250000	318380000	261870000	554680000	290380000	264300000	1103200000	528000000	575220000	40746	2094	38347	249669;249670;249671;249672;249673;249674;249675;249676;249677;249678	334794;334795;334796;334797;334798;334799;334800;334801;334802;334803;334804;334805;334806;334807;334808;334809;334810;334811;334812	334806			19	
QDYKEGEMTLK	2	Acetyl (K)	1382.6388	0.63878147	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		50.074	40.682	2	0.0041713	22494	160513_QHF_FH_JSI11Kac_3	68.536	53.862			0.61993	0.65796	76.727	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95809	1.1319	NaN	1	0	Median	0.40112	0.38245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6979800	4455300	2524500	0	0	0	2461000	1246000	1215000	4518900	3209300	1309600	0	0	0	40747	1267	38348	249679;249680	334813	334813	1169		1	
QDYQAVR	0	Unmodified	878.42463	0.42463001	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	9.99	9.741	2	0.020108	7426	160511_QHF_FH_JSI11i_1	57.281	28.132			1.1594	1.1575	12.665	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3226	1.2659	NaN	1	0	Median	1.0164	1.0583	NaN	1	0	Median	125550000	59170000	66385000	0	0	0	0	0	0	61984000	29370000	32614000	63571000	29800000	33771000	40748	1239	38349	249681;249682	334814;334815	334814			2	
QDYQLGFTLIWK	1	Unmodified	1510.782	0.78201531	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.884	82.924	2	3.4804E-50	44200	160513_QHF_FH_JSI12Kac_6	214.04	180.64			0.93652	0.88107	7.766	3	1	Plateau	0.9911	0.85969	NaN	1	0	Median	0.84105	1.0041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88495	0.93262	NaN	1	0	Median	250010000	130610000	119400000	84216000	46229000	37987000	90566000	47136000	43430000	0	0	0	75227000	37243000	37984000	40749	2362	38350	249683;249684;249685;249686	334816;334817;334818;334819;334820	334819			5	
QEAADAALR	0	Unmodified	943.47231	0.47230849	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	17.548	10.129	2	0.00047659	7272	160513_QHF_FH_JSI12Kac_3	86.67	29.623			0.97789	1.1549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97789	1.1549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2996200	1652200	1344000	0	0	0	2996200	1652200	1344000	0	0	0	0	0	0	40750	1857	38351	249687;249688;249689	334821;334822;334823	334822			3	
QEAATLAANNTQLQAR	0	Unmodified	1698.8649	0.86491009	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	33.752	33.148	2;3	2.2752E-52	29708	160511_QHF_FH_JSI11i_1	222.94	197.5			1.0355	1.0118	10.144	4	1	Median	1.0824	0.88557	NaN	1	0	Median	0.83653	0.99182	NaN	1	1	Median	1.1566	1.1312	NaN	1	0	Median	0.99051	1.0321	NaN	1	0	Median	230280000	118430000	111850000	61658000	30868000	30790000	62965000	35611000	27354000	57220000	29121000	28099000	48435000	22833000	25603000	40751	2587	38352	249690;249691;249692;249693;249694	334824;334825;334826;334827;334828;334829;334830	334824			7	
QEAFSIR	0	Unmodified	849.43447	0.43446642	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.742	27.374	2	0.031809	22933	160511_QHF_FH_JSI11i_2	51.43	23.007			1.0292	1.0311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0292	1.0311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	244170000	126180000	117990000	0	0	0	0	0	0	244170000	126180000	117990000	0	0	0	40752	1085	38353	249695	334831	334831			1	
QEAGISEGQGTAGEEEEK	1	Unmodified	1847.8021	0.80209464	343	O43583	DENR	Density-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	21.189	18.452	2	1.2675E-236	15889	160511_QHF_FH_JSI12i_1	339.61	280.04			1.1612	1.105	24.37	6	0	Median	1.2076	0.99287	NaN	1	0	Median	0.83729	0.99864	NaN	1	0	Median	1.4328	1.3978	41.032	2	0	Median	1.1716	1.2493	9.5655	2	0	Median	526180000	262200000	263970000	110260000	48928000	61328000	131860000	68447000	63416000	118690000	51534000	67156000	165370000	93296000	72071000	40753	343	38354	249696;249697;249698;249699;249700;249701	334832;334833;334834;334835;334836;334837;334838;334839;334840;334841;334842;334843	334837			12	
QEAIPDEVIK	1	Unmodified	1140.6027	0.60265396	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		44.589	44.181	2	9.1956E-06	39754	160511_QHF_FH_JSI10i_1	107.21	69.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40754	1060	38355	249702;249703	334844;334845	334845			2	
QEAIPDEVIKK	2	Unmodified	1268.6976	0.69761697	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	1.2	0.4	4	1								1	1	2	1	36.71	36.137	3	0.0021574	32903	160511_QHF_FH_JSI12i_1	46.069	32.932			0.80382	0.92713	35.829	5	0	Median	1.1321	0.92713	NaN	1	0	Median	0.80382	0.96493	NaN	1	0	Median	0.5142	0.50288	16.115	2	0	Median	0.92209	0.96026	NaN	1	0	Median	274010000	162160000	111850000	27016000	11613000	15403000	78560000	45998000	32562000	104900000	68996000	35899000	63536000	35550000	27985000	40755	1060	38356	249704;249705;249706;249707;249708	334846	334846			1	
QEAKPQQAAGMLSPK	2	Unmodified	1582.8137	0.81372614	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	28.505	27.747	3	0.0039328	23458	160511_QHF_FH_JSI12i_2	48.177	36.385			0.90014	1.1054	33.61	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90014	1.1054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0601	1.1016	47.531	2	0	Median	109650000	61773000	47881000	0	0	0	23616000	15105000	8510800	0	0	0	86038000	46668000	39370000	40756	2409	38357	249709;249710;249711;249712	334847;334848;334849;334850	334848			4	
QEALLAAISEK	1	Unmodified	1171.6449	0.64485312	3395	Q8IUD2;O15083	ERC1;ERC2	ELKS/Rab6-interacting/CAST family member 1;ERC protein 2	yes	no	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	61.346	60.433	2	0.0016446	52450	160511_QHF_FH_JSI11i_2	73.499	50.48			1.6604	1.7889	28.152	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4137	1.466	NaN	1	0	Median	1.9502	2.1829	NaN	1	0	Median	65085000	27013000	38071000	0	0	0	0	0	0	35921000	16469000	19451000	29164000	10544000	18620000	40757	3395	38358	249713;249714	334851	334851			1	
QEANTEPR	0	Unmodified	943.43592	0.43592298	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.7517	4.6524	2	0.0013527	2338	160511_QHF_FH_JSI11i_1	90.64	64.532			3.7297	3.6588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7297	3.6588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	223040000	46771000	176270000	0	0	0	0	0	0	223040000	46771000	176270000	0	0	0	40758	5295	38359	249715	334852	334852			1	
QEANTEPRK	1	Unmodified	1071.5309	0.530886	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	3	3	4.585	4.2538	2;3	2.1594E-05	2139	160511_QHF_FH_JSI11i_2	106.42	68.874			0.60233	0.66998	33.689	8	2	Median	0.54258	0.46149	NaN	1	0	Median	0.5817	0.70636	21.663	2	1	Median	1.1046	1.124	9.1699	2	1	Median	0.5541	0.58642	17.709	3	0	Median	1055600000	551900000	503740000	142490000	99410000	43077000	495170000	290230000	204950000	337410000	114390000	223020000	80570000	47873000	32697000	40759	5295	38360	249716;249717;249718;249719;249720;249721;249722;249723;249724	334853;334854;334855;334856;334857;334858;334859	334855			7	
QEAQAGPWPFSSSQTQPAVR	0	Unmodified	2171.0396	0.039579989	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		64.814	64.416	2	1.4456E-16	58645	160511_QHF_FH_JSI11i_1	137.46	105.39			1.1344	1.2029	5.7604	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0651	1.2529	NaN	1	0	Median	1.2081	1.1549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54119000	25946000	28173000	0	0	0	28592000	14831000	13761000	25527000	11115000	14412000	0	0	0	40760	2137	38361	249725;249726;249727	334860;334861;334862	334861			3	
QEARPEPAR	0	Unmodified	1052.5363	0.53630573	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	3	3	5.2628	5.0662	2;3	0.00018098	2823	160511_QHF_FH_JSI11i_2	95.358	68.104			1.0464	1.1412	21.737	9	1	Median	1.2385	1.0674	35.043	2	1	Median	0.94008	1.1412	NaN	1	0	Median	1.2869	1.2158	5.6491	3	0	Plateau	0.96167	0.98961	22.911	3	0	Median	1379300000	656560000	722760000	428670000	201260000	227410000	140810000	80687000	60122000	386460000	173340000	213120000	423380000	201280000	222100000	40761	1857	38362	249728;249729;249730;249731;249732;249733;249734;249735;249736	334863;334864;334865;334866;334867;334868;334869;334870;334871;334872;334873	334871			11	
QEASKPPR	1	Unmodified	911.48248	0.48247924	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1		By MS/MS		By matching	2	0		2									1		1	4.5846	4.0954	3	0.0084882	2148	160511_QHF_FH_JSI10i_2	46.158	16.685			0.4389	0.51205	33.169	2	0	Median	NaN	NaN	NaN	0	0	Median	0.33231	0.40499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57969	0.64739	NaN	1	0	Median	243460000	168440000	75021000	0	0	0	123370000	91678000	31690000	0	0	0	120090000	76758000	43331000	40762	3411	38363	249737;249738	334874	334874			1	
QEATLVVGGDGR	0	Unmodified	1200.6099	0.6098646	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	31.61	27.532	2	5.3078E-12	16068	160513_QHF_FH_JSI11Kac_3	121.68	90.993			0.95694	0.998	14.723	7	0	Median	1.206	0.998	NaN	1	0	Median	0.86269	1.0256	13.148	2	0	Median	1.0571	1.0315	12.944	2	0	Median	1.0515	1.1212	28.827	2	0	Median	1945600000	938770000	1006800000	365300000	157980000	207310000	595320000	331200000	264120000	560740000	260350000	300390000	424230000	189230000	235000000	40763	1460	38364	249739;249740;249741;249742;249743;249744;249745	334875;334876;334877;334878;334879;334880;334881;334882;334883;334884	334877			10	
QEAVPVSNLDIESK	1	Unmodified	1527.7781	0.77805214	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.62	53.957	2	0.00042408	49042	160511_QHF_FH_JSI12i_1	97.214	62.836			0.88377	0.87828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88377	0.87828	NaN	1	1	Median	15955000	6523600	9431900	0	0	0	0	0	0	0	0	0	15955000	6523600	9431900	40764	3140	38365	249746	334885	334885			1	
QEAVVEEDYNENAK	1	Unmodified	1636.7217	0.72165947	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.5	4				4					1	1	4	2	31.105	26.491	2	5.2807E-81	23516	160511_QHF_FH_JSI11i_1	245.69	240.63			1.152	1.186	10.786	6	0	Median	1.329	1.0949	NaN	1	0	Median	1.0325	1.209	NaN	1	0	Median	1.3424	1.3172	10.612	2	0	Median	1.0516	1.099	8.0675	2	0	Median	505320000	257050000	248270000	111990000	53476000	58510000	147220000	77818000	69400000	113960000	52000000	61961000	132160000	73760000	58397000	40765	2116	38366	249747;249748;249749;249750;249751;249752;249753;249754	334886;334887;334888;334889;334890;334891;334892;334893;334894;334895;334896	334887			11	
QECLDSR	0	Unmodified	906.38653	0.38652995	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	7.4445	3.698	2	0.01384	4624	160511_QHF_FH_JSI12i_1	67.169	31.814			2.1638	2.2151	75.57	6	0	Median	NaN	NaN	NaN	0	0	Median	2.1187	2.5203	114.87	2	0	Median	1.6372	1.5975	92.726	2	0	Median	2.3391	2.499	63.555	2	0	Median	1741600000	287270000	1454300000	0	0	0	768390000	87851000	680540000	526060000	102640000	423420000	447100000	96776000	350330000	40766	1264	38367	249755;249756;249757;249758;249759;249760	334897;334898;334899;334900	334897			4	
QEDVIATANLSR	0	Unmodified	1315.6732	0.67319314	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.017	40.38	2	5.661E-06	36725	160511_QHF_FH_JSI12i_1	122.55	95.432			0.84481	0.8583	7.6736	4	2	Median	1.1104	0.92203	NaN	1	0	Median	0.67191	0.78046	NaN	1	1	Median	0.8416	0.82249	NaN	1	1	Median	0.84804	0.89568	NaN	1	0	Median	790430000	401800000	388630000	161850000	68268000	93579000	209100000	117000000	92101000	206440000	102010000	104430000	213050000	114530000	98524000	40767	5616;5628	38368	249761;249762;249763;249764	334901;334902;334903;334904;334905;334906;334907	334903			7	
QEEASGGPTAPK	1	Unmodified	1170.5517	0.55168102	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	2	2	2	9.8613	7.5387	2	2.3549E-16	6487	160511_QHF_FH_JSI11i_1	166.29	112.52			1.05	1.0318	20.554	7	2	Median	0.97848	0.80482	NaN	1	0	Median	0.93515	1.1077	35.836	2	2	Median	1.0205	0.9884	6.0713	2	0	Median	1.1563	1.2037	1.7661	2	0	Median	1048700000	514450000	534290000	187500000	88662000	98837000	434600000	224690000	209910000	184550000	86670000	97881000	242090000	114420000	127660000	40768	1710	38369	249765;249766;249767;249768;249769;249770;249771	334908;334909;334910;334911;334912;334913;334914;334915	334909			8	
QEEATATELTTK	1	Unmodified	1320.6409	0.64088996	2411	Q9UHC7;Q13434	MKRN1;MKRN4P	E3 ubiquitin-protein ligase makorin-1;Putative E3 ubiquitin-protein ligase makorin-4	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.527	22.251	2	4.5423E-05	19420	160511_QHF_FH_JSI10i_1	110.93	87.503			0.75425	0.89042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75425	0.89042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15363000	7117400	8245300	0	0	0	15363000	7117400	8245300	0	0	0	0	0	0	40769	2411	38370	249772;249773	334916;334917	334917			2	
QEEEMMAK	1	Unmodified	994.40997	0.4099675	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.262	12.132	2	0.042114	9653	160511_QHF_FH_JSI11i_1	47.599	27.117			2.5661	2.4911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5661	2.4911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	360400000	183760000	176640000	0	0	0	0	0	0	360400000	183760000	176640000	0	0	0	40770	1436	38371	249774	334918	334918			1	
QEEEMMAKEEELVK	2	Unmodified	1721.7852	0.78518771	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	4	2	3	45.92	45.184	2;3	2.3018E-05	39623	160511_QHF_FH_JSI10i_2	87.618	71.364			3.0049	3.518	80.308	7	7	Median	3.3262	2.8454	66.325	2	2	Median	3.0049	3.518	102.14	3	3	Plateau	4.3442	4.2712	NaN	1	1	Median	5.0428	5.2669	NaN	1	1	Median	1674100000	333150000	1340900000	276650000	71197000	205450000	535810000	155750000	380070000	395880000	53144000	342740000	465750000	53065000	412690000	40771	1436	38372	249775;249776;249777;249778;249779;249780;249781;249782;249783;249784;249785	334919;334920;334921;334922;334923;334924;334925;334926;334927;334928;334929	334929			11	
QEEENPAEETGEEK	1	Unmodified	1617.6642	0.66420417	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.26	13.83	2	2.4469E-10	11570	160511_QHF_FH_JSI12i_1	113.24	67.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40772	373	38373	249786	334930	334930			1	
QEEERQDGGQNESFK	1	Unmodified	1779.766	0.7659839	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	9.9106	9.5591	2;3	3.621E-07	7362	160511_QHF_FH_JSI9i_1	109.07	103.87			0.87189	0.99219	7.4355	5	1	Median	1.2576	1.0219	NaN	1	0	Median	0.83527	0.97168	6.2503	2	1	Median	1.0203	0.99219	NaN	1	0	Median	0.81865	0.8568	NaN	1	0	Median	536170000	284430000	251730000	83433000	41724000	41708000	185780000	100860000	84917000	146140000	74551000	71593000	120810000	67298000	53517000	40773	3216	38374	249787;249788;249789;249790;249791	334931;334932;334933;334934;334935;334936;334937;334938;334939	334939			9	
QEEESLGQVTDQVEVNAQNSVPDEEAK	1	Unmodified	2971.353	0.35304738	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	68.822	68.39	3	9.6159E-41	60846	160511_QHF_FH_JSI9i_1	155.73	143.42			0.84522	0.98374	33.957	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.84522	0.98374	NaN	1	1	Median	1.8805	1.8228	NaN	1	1	Median	0.99386	1.0469	NaN	1	1	Median	145010000	88943000	56066000	0	0	0	69128000	50070000	19058000	35042000	12010000	23032000	40839000	26863000	13976000	40774	2233	38375	249792;249793;249794;249795;249796	334940;334941;334942;334943;334944;334945	334945			6	
QEEETSGQDSSLK	1	Unmodified	1436.6267	0.62669646	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	10.55	8.7921	2	1.011E-40	7347	160511_QHF_FH_JSI9i_1	199.43	187.22			1.0118	1.0003	20.848	5	1	Median	0.89289	0.72979	NaN	1	0	Median	1.0118	1.1883	NaN	1	1	Median	1.1639	1.1049	14.072	2	0	Median	0.88186	0.93043	NaN	1	0	Median	383370000	179970000	203390000	90948000	42285000	48662000	83431000	38752000	44678000	99877000	40868000	59009000	109110000	58069000	51042000	40775	4290	38376	249797;249798;249799;249800;249801	334946;334947;334948;334949;334950;334951;334952;334953	334953			8	
QEEGADASEEDPTPAGEEDVK	1	Unmodified	2201.9084	0.9084102	3370	Q86X53	ERICH1	Glutamate-rich protein 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	70.491	70.09	3	0.052951	63735	160511_QHF_FH_JSI11i_1	17.148	12.148			1.0434	1.1002	4.3722	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94235	1.1177	NaN	1	0	Median	1.0815	1.0293	NaN	1	0	Median	1.0434	1.1002	NaN	1	0	Median	472510000	239890000	232620000	0	0	0	174100000	90826000	83272000	154690000	80899000	73787000	143720000	68162000	75561000	40776	3370	38377	249802;249803;249804	334954	334954			1	
QEELEAALQR	0	Unmodified	1185.599	0.59896556	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	38.642	37.954	2	8.6523E-11	33553	160511_QHF_FH_JSI9i_1	142	102.85		+	0.97588	0.97816	23.533	5	0	Median	0.97588	0.78966	NaN	1	0	Median	0.99247	1.2007	27.787	2	0	Median	1.0042	0.97816	NaN	1	0	Median	0.83235	0.86374	NaN	1	0	Median	2257900000	1187900000	1070000000	401870000	207400000	194480000	616620000	327530000	289090000	737920000	386780000	351140000	501470000	266150000	235320000	40777	53;71	38378	249805;249806;249807;249808;249809	334955;334956	334955			2	
QEEMNSQQEEEEMETDAR	0	Unmodified	2211.8532	0.85322029	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.957	33.355	2	0	29891	160511_QHF_FH_JSI11i_1	388.11	384.62			1.0767	1.0618	16.575	4	0	Median	1.2353	1.0209	NaN	1	0	Median	1.1041	1.2829	NaN	1	0	Median	0.88046	0.86154	NaN	1	0	Median	1.05	1.1042	NaN	1	0	Median	269810000	138430000	131380000	46230000	24004000	22227000	97958000	51308000	46651000	84724000	42226000	42498000	40896000	20894000	20002000	40778	2412	38379	249810;249811;249812;249813	334957;334958;334959;334960;334961;334962;334963;334964	334958			8	
QEENDVVEK	1	Unmodified	1088.4986	0.49858282	5686	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	10.038	9.7349	2	0.0016852	7543	160511_QHF_FH_JSI10i_1	70.1	13.842			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40779	5686	38380	249814;249815	334965;334966	334966			2	
QEENGVFIK	1	Unmodified	1062.5346	0.53457439	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	28.684	28.122	2	0.0022514	25175	160511_QHF_FH_JSI12i_1	66.351	26.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40780	3249	38381	249816	334967	334967			1	
QEEPPPGPQRPDQSAAAAGPGDPK	1	Unmodified	2396.1357	0.13566522	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	27.549	26.878	3	0.00093833	23196	160511_QHF_FH_JSI9i_1	42.041	26.619			1.7196	1.3925	17.283	3	0	Plateau	1.7597	1.4141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1007	1.0708	NaN	1	0	Median	1.0108	1.03	NaN	1	0	Median	106570000	53288000	53283000	39384000	16704000	22680000	0	0	0	34700000	19700000	15000000	32487000	16884000	15603000	40781	4349	38382	249817;249818;249819	334968;334969;334970;334971;334972	334972			5	
QEESEQIK	1	Unmodified	989.46655	0.46655441	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS		By MS/MS		1.25	0.433	3	1								2		2		7.6931	7.2934	2	0.0072746	4913	160511_QHF_FH_JSI11i_1	60.019	30.87		+	1.2955	1.147	23.821	4	0	Median	1.383	1.147	9.3874	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0054	0.99884	37.723	2	0	Median	NaN	NaN	NaN	0	0	Median	488300000	200230000	288060000	305810000	113890000	191920000	0	0	0	182480000	86339000	96144000	0	0	0	40782	53;71	38383	249820;249821;249822;249823	334973;334974	334973			2	
QEESESPVERPLK	1	Unmodified	1526.7577	0.75765105	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	20.973	19.837	3	0.0052309	16331	160511_QHF_FH_JSI12i_2	51.726	27.167			0.41471	0.4407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41471	0.4407	NaN	1	1	Median	24056000	19052000	5004600	0	0	0	0	0	0	0	0	0	24056000	19052000	5004600	40783	4242	38384	249824	334975	334975			1	
QEESLMPSQVVK	1	Unmodified	1373.6861	0.68606601	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.629	46.95	2	2.6911E-07	42608	160511_QHF_FH_JSI12i_1	129.82	115.7			1.2238	1.2048	15.859	4	2	Median	1.4687	1.2034	NaN	1	0	Median	1.0198	1.2062	NaN	1	1	Median	1.4886	1.4473	NaN	1	1	Median	0.95068	0.98168	NaN	1	0	Median	381380000	184190000	197190000	106380000	49362000	57014000	95874000	51111000	44763000	89956000	40917000	49039000	89174000	42799000	46376000	40784	4727	38385	249825;249826;249827;249828	334976;334977;334978;334979	334977			4	
QEESVDPDYWEK	1	Unmodified	1523.6416	0.64161824	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.358	46.859	2	0.00024907	42504	160511_QHF_FH_JSI12i_1	142.08	131.71			1.207	1.4205	9.3198	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.207	1.4205	NaN	1	1	Median	1.3751	1.3492	NaN	1	1	Median	1.0996	1.1855	NaN	1	1	Median	137110000	68106000	69007000	0	0	0	58435000	27726000	30709000	41922000	20192000	21730000	36755000	20188000	16567000	40785	2578	38386	249829;249830;249831	334980;334981;334982	334981			3	
QEETVESK	1	Unmodified	948.44001	0.4400053	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.6765	5.3304	2	0.0048906	3350	160511_QHF_FH_JSI12i_1	74.941	33.309			0.97974	1.045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97974	1.045	NaN	1	1	Median	60769000	26972000	33797000	0	0	0	0	0	0	0	0	0	60769000	26972000	33797000	40786	3849	38387	249832;249833	334983;334984	334984			2	
QEFEKQDELK	2	Acetyl (K)	1334.6354	0.63541065	3343	Q86VP6;O75155	CAND1;CAND2	Cullin-associated NEDD8-dissociated protein 1;Cullin-associated NEDD8-dissociated protein 2	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	45.599	36.479	2	0.008404	20433	160513_QHF_FH_JSI11Kac_3	61.56	40.112			0.69077	0.73872	67.044	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0113	1.1868	NaN	1	0	Median	0.47184	0.45982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19622000	13147000	6474200	0	0	0	5127100	3076600	2050600	11201000	6777600	4423700	3293100	3293100	0	40787	3343	38388	249834;249835;249836	334985;334986;334987	334986	2852		3	
QEGAWTILPLLPHFSVTYSR	0	Unmodified	2314.211	0.21100241	3171	Q6Y288	B3GALTL	Beta-1,3-glucosyltransferase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.662	88.941	3	4.5226E-07	51163	160513_QHF_FH_JSI10Kac_6	88.755	73.826			0.72933	0.85521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72933	0.85521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68431000	40689000	27742000	0	0	0	68431000	40689000	27742000	0	0	0	0	0	0	40788	3171	38389	249837	334988;334989	334988			2	
QEGGDNDLIER	0	Unmodified	1244.5633	0.56330834	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	24.47	20.806	2	6.606E-19	18337	160511_QHF_FH_JSI12i_1	168.22	123.26			0.97116	0.99535	6.2385	7	0	Median	1.185	0.97405	NaN	1	0	Median	0.77349	0.90637	3.687	2	0	Median	1.0542	1.0368	2.1642	2	0	Median	0.96149	1.0139	2.6113	2	0	Median	664440000	318080000	346360000	109980000	46202000	63777000	165180000	76646000	88535000	181160000	88160000	93003000	208120000	107080000	101040000	40789	1359	38390	249838;249839;249840;249841;249842;249843;249844	334990;334991;334992;334993;334994;334995;334996;334997;334998	334992			9	
QEGLESVLK	1	Unmodified	1001.5393	0.53932542	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	44.201	43.452	2	0.00088744	38513	160511_QHF_FH_JSI9i_1	72.243	38.447			0.70572	0.75333	12.495	3	0	Plateau	1.1122	0.92679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92258	0.88846	NaN	1	0	Median	0.69156	0.73311	NaN	1	0	Median	481380000	246210000	235170000	117710000	48353000	69359000	0	0	0	157340000	68116000	89228000	206320000	129740000	76584000	40790	1065	38391	249845;249846;249847	334999;335000	335000			2	
QEGQVGHYELVMPQAN	0	Unmodified	1798.8308	0.83083277	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.62	56.968	2	2.8691E-05	51608	160511_QHF_FH_JSI11i_1	102.62	89.193			1.0447	1.0481	5.7411	4	0	Median	1.1452	0.94971	NaN	1	0	Median	0.90667	1.0618	NaN	1	0	Median	1.1212	1.0813	NaN	1	0	Median	0.97342	1.0346	NaN	1	0	Median	189730000	94477000	95252000	45751000	26072000	19679000	42055000	24338000	17717000	52016000	19777000	32238000	49907000	24290000	25617000	40791	264	38392	249848;249849;249850;249851	335001;335002;335003;335004;335005;335006	335002			6	
QEGVLNSK	1	Unmodified	873.4556	0.45559579	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	13.703	6.5209	2	0.044589	5588	160513_QHF_FH_JSI12Kac_3	54.157	22.868			0.91248	0.92684	6.1519	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93154	0.88738	NaN	1	0	Median	0.8938	0.96805	NaN	1	1	Median	8411000	4854700	3556300	0	0	0	0	0	0	4733100	2812100	1921000	3678000	2042600	1635300	40792	1787	38393	249852;249853	335007;335008	335008			2	
QEHADGLLK	1	Unmodified	1009.5193	0.51925868	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.567	14.652	2	0.018992	11720	160511_QHF_FH_JSI12i_2	51.066	25.127			0.51797	0.55375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51797	0.55375	NaN	1	1	Median	41351000	27727000	13624000	0	0	0	0	0	0	0	0	0	41351000	27727000	13624000	40793	3216	38394	249854	335009	335009			1	
QEIFQEQLAAVPEFR	0	Unmodified	1803.9155	0.91554867	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								1	3	2	3	85.675	85.182	2	1.432E-87	77687	160511_QHF_FH_JSI11i_1	289.89	230.82			1.128	1.1547	11.874	8	8	Median	1.3844	1.1256	NaN	1	1	Median	1.0783	1.2938	9.7622	3	3	Median	1.1586	1.0776	9.0685	2	2	Median	1.1124	1.2187	17.387	2	2	Median	427150000	203330000	223820000	24384000	10266000	14118000	162930000	74757000	88175000	138340000	68218000	70118000	101500000	50092000	51410000	40794	5708	38395	249855;249856;249857;249858;249859;249860;249861;249862;249863	335010;335011;335012;335013;335014;335015;335016;335017;335018	335011			9	
QEIIEQLLSNIFHK	1	Unmodified	1710.9305	0.93047046	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.31	102.26	3	8.8779E-08	89046	160511_QHF_FH_JSI12i_3	109.84	97.815			0.86106	0.79281	11.516	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86106	0.99428	NaN	1	0	Median	0.90669	0.85606	NaN	1	0	Median	0.77544	0.79281	NaN	1	0	Median	588060000	347970000	240090000	0	0	0	66534000	34703000	31831000	124180000	67439000	56743000	397350000	245830000	151520000	40795	2887	38396	249864;249865;249866	335019;335020;335021;335022;335023;335024	335023			6	
QEILAALEK	1	Unmodified	1013.5757	0.57571092	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	56.947	55.042	2	3.2359E-06	48210	160511_QHF_FH_JSI9i_2	123.63	71.771			1.0172	1.0882	21.019	9	1	Median	1.2408	1.0271	9.1247	2	0	Median	0.93578	1.1154	3.4954	2	0	Median	1.0136	1.0046	19.31	2	0	Median	1.0172	1.0712	34.584	3	1	Median	2594000000	1280900000	1313100000	491520000	194490000	297030000	633190000	330610000	302570000	764770000	368110000	396670000	704550000	387730000	316820000	40796	873	38397	249867;249868;249869;249870;249871;249872;249873;249874;249875	335025;335026;335027;335028;335029;335030;335031;335032;335033;335034;335035;335036;335037;335038;335039;335040;335041;335042	335038			18	
QEILENK	1	Unmodified	872.46035	0.46034682	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	14.868	14.589	2	0.0053009	12418	160511_QHF_FH_JSI12i_1	102	33.301			1.6358	1.6484	7.1106	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6242	1.5675	NaN	1	1	Median	1.6475	1.7334	NaN	1	1	Median	292750000	156960000	135790000	0	0	0	0	0	0	147780000	79180000	68604000	144960000	77780000	67182000	40797	5645	38398	249876;249877	335043;335044	335044			2	
QEILVEPEPLFGAPK	1	Unmodified	1665.8978	0.89777334	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	5									2	1	1	1	84.584	84.048	2;3	1.2696E-05	76231	160511_QHF_FH_JSI10i_1	127.56	110.62			0.98817	0.93777	45.035	5	0	Median	0.72921	0.59206	65.04	2	0	Median	0.76214	0.89249	NaN	1	0	Median	1.2066	1.1506	NaN	1	0	Median	0.98817	1.0348	NaN	1	0	Median	185040000	97645000	87394000	64553000	35420000	29133000	52043000	29594000	22449000	38912000	17464000	21447000	29531000	15167000	14364000	40798	618	38399	249878;249879;249880;249881;249882	335045;335046;335047	335046			1	
QEIQHLFR	0	Unmodified	1069.5669	0.56687757	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	3	4	31.816	31.242	2;3	4.2916E-05	26741	160511_QHF_FH_JSI11i_3	123.72	112.96			1.0866	0.97066	15.57	9	2	Median	1.146	0.97066	NaN	1	0	Median	0.70844	0.87563	0.62429	2	0	Median	1.0866	1.1075	9.1358	3	1	Median	1.2693	1.2716	20.173	3	1	Median	718590000	341760000	376830000	54598000	24389000	30209000	136840000	82484000	54359000	311030000	145270000	165760000	216110000	89613000	126500000	40799	817	38400	249883;249884;249885;249886;249887;249888;249889;249890;249891;249892	335048;335049;335050;335051;335052;335053;335054;335055;335056;335057;335058;335059	335048			12	
QEISAAFK	1	Unmodified	892.46543	0.46543219	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.71	8	3	2			4	3			5	4	5	6	31.593	27.488	1;2	4.1246E-05	25438	160511_QHF_FH_JSI10i_1	136.8	107.46			1.4981	1.022	20.474	20	0	Linear	1.1693	1.0085	28.051	5	0	Median	0.97879	1.1551	20.162	4	0	Median	1.0523	1.0299	16.033	5	0	Median	1.0026	1.0986	15.053	6	0	Median	6006600000	2902500000	3104100000	1209700000	553170000	656560000	1505000000	786720000	718280000	1735200000	788040000	947160000	1556700000	774610000	782080000	40800	916	38401	249893;249894;249895;249896;249897;249898;249899;249900;249901;249902;249903;249904;249905;249906;249907;249908;249909;249910;249911;249912	335060;335061;335062;335063;335064;335065;335066;335067;335068;335069;335070;335071;335072;335073;335074;335075;335076;335077;335078;335079;335080;335081;335082;335083;335084;335085;335086;335087	335071			27	
QEIVSLFNAFGR	0	Unmodified	1379.7197	0.7197494	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.398	91.903	2	1.2099E-05	80668	160511_QHF_FH_JSI11i_2	116.77	76.764			0.94802	0.90797	11.186	4	0	Median	1.0066	0.84565	NaN	1	0	Median	0.68507	0.8292	NaN	1	0	Median	0.95201	0.97489	NaN	1	0	Median	0.94405	1.0452	NaN	1	0	Median	361190000	182230000	178960000	69891000	38745000	31146000	120850000	68342000	52510000	96139000	38825000	57313000	74311000	36320000	37991000	40801	4109	38402	249913;249914;249915;249916	335088;335089;335090;335091;335092;335093;335094;335095	335092			8	
QEKAFSLK	2	Acetyl (K)	991.53385	0.53384611	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.471	37.956	2	0.051732	22452	160513_QHF_FH_JSI11Kac_4	47.96	24.917			0.56131	0.55117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56131	0.55117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7005300	3233300	3771900	0	0	0	0	0	0	7005300	3233300	3771900	0	0	0	40802	3323	38403	249917	335096	335096			1	
QELALLWVQQR	0	Unmodified	1382.767	0.76703394	5857				yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		67.007	66.014	3	0.05686	55494	160511_QHF_FH_JSI10i_3	29.807	9.6828	+		1.2581	1.1709	5.5238	3	0	Median	1.5073	1.2397	NaN	1	0	Median	0.97651	1.1101	NaN	1	0	Median	1.2581	1.1709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156720000	61984000	94737000	23060000	9006800	14053000	38914000	17424000	21491000	94746000	35553000	59193000	0	0	0	40803	5857	38404	249918;249919;249920	335097	335097			0	
QELAYNQQLSEK	1	Unmodified	1449.71	0.70997257	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	33.987	33.346	2	5.6391E-07	29813	160511_QHF_FH_JSI11i_1	107.06	72.523			2.989	2.5274	8.493	3	2	Plateau	3.0932	2.5274	NaN	1	0	Median	2.0932	2.4511	11.747	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143810000	52429000	91379000	47847000	15263000	32584000	95961000	37166000	58795000	0	0	0	0	0	0	40804	201	38405	249921;249922;249923;249924;249925	335098;335099;335100;335101;335102	335098			5	
QELDDILK	1	Unmodified	972.51278	0.51277632	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	52.22	51.55	2	0.00011874	46801	160511_QHF_FH_JSI12i_1	127.56	73.408			0.96719	0.95667	6.6887	4	0	Median	1.0614	0.87565	NaN	1	0	Median	0.85664	0.99079	NaN	1	0	Median	0.9457	0.92374	NaN	1	0	Median	0.98918	1.0138	NaN	1	0	Median	739780000	371510000	368270000	156090000	64816000	91277000	203370000	114040000	89330000	206630000	99974000	106650000	173680000	92674000	81009000	40805	2578;2318	38406	249926;249927;249928;249929	335103;335104	335103			2	
QELEAEYLAIFKK	2	Unmodified	1580.845	0.84500949	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	no	no	0	0	0	1			By MS/MS		2	0		1										1		79.735	79.108	3	0.0025085	69482	160511_QHF_FH_JSI11i_2	55.841	45.053			0.9857	1.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9857	1.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19472000	10784000	8687300	0	0	0	0	0	0	19472000	10784000	8687300	0	0	0	40806	5437	38407	249930	335105	335105			1	
QELENQR	0	Unmodified	915.44101	0.44100836	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	5.8711	5.5472	2	0.010355	3560	160511_QHF_FH_JSI12i_1	75.189	45.813			1.0227	1.0531	14.347	4	0	Median	1.1848	0.98367	NaN	1	0	Median	0.94787	1.1273	NaN	1	0	Median	0.8613	0.8358	NaN	1	0	Median	1.1034	1.1328	NaN	1	0	Median	315970000	148720000	167250000	57063000	25740000	31323000	82626000	37905000	44721000	75783000	40156000	35626000	100500000	44918000	55584000	40807	5289	38408	249931;249932;249933;249934	335106;335107	335106			2	
QELGEAR	0	Unmodified	801.39808	0.39808091	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.648	7.3003	2	0.0095257	5187	160511_QHF_FH_JSI10i_1	78.77	5.9809			0.95584	0.99935	5.7699	4	0	Median	1.2136	1.0049	NaN	1	0	Median	0.89661	1.0617	NaN	1	0	Median	0.95358	0.92281	NaN	1	0	Median	0.95812	0.9938	NaN	1	0	Median	2141700000	1016400000	1125300000	516510000	228680000	287830000	559670000	300060000	259600000	529370000	218330000	311040000	536150000	269350000	266800000	40808	263	38409	249935;249936;249937;249938	335108;335109;335110;335111;335112;335113;335114;335115	335113			8	
QELIDFK	1	Unmodified	891.47018	0.47018322	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.38	48.699	2	0.0081424	43947	160511_QHF_FH_JSI11i_1	84.743	30.132			1.3536	1.2558	8.594	4	0	Median	1.3736	1.1439	NaN	1	0	Median	1.0032	1.1936	NaN	1	0	Median	1.3578	1.3214	NaN	1	0	Median	1.3495	1.3754	NaN	1	0	Median	337240000	151730000	185500000	66873000	28785000	38089000	76573000	39505000	37069000	109510000	46652000	62853000	84284000	36790000	47493000	40809	5437	38410	249939;249940;249941;249942	335116;335117;335118	335116			3	
QELILSNSEDK	1	Unmodified	1274.6354	0.63541065	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	38.276	34.066	2	1.4557E-23	30244	160511_QHF_FH_JSI11i_1	180.07	125.91			1.0566	1.0966	17.054	7	0	Median	1.0948	0.88851	NaN	1	0	Median	0.97879	1.1541	34.855	2	0	Median	1.0866	1.0566	5.2516	2	0	Median	1.0416	1.118	1.4105	2	0	Median	1752000000	835800000	916200000	423940000	182400000	241540000	472680000	244510000	228170000	466070000	219260000	246810000	389320000	189630000	199690000	40810	1805	38411	249943;249944;249945;249946;249947;249948;249949	335119;335120;335121;335122;335123;335124	335119			6	
QELIQAEIQNGVK	1	Unmodified	1468.7886	0.78855725	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	53.318	52.702	2;3	5.7756E-11	47635	160511_QHF_FH_JSI11i_1	193.3	152.31			0.99548	1.1691	15.991	5	2	Median	1.4889	1.2409	NaN	1	1	Median	0.99548	1.1691	NaN	1	0	Median	1.1225	1.0795	27.217	2	1	Median	0.96459	0.99699	NaN	1	0	Median	495670000	216900000	278780000	79355000	34387000	44968000	141520000	68441000	73074000	185540000	69151000	116390000	89265000	44917000	44347000	40811	2323	38412	249950;249951;249952;249953;249954	335125;335126;335127;335128;335129;335130	335125			5	
QELLCAFWK	1	Unmodified	1193.5903	0.59031513	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.5	80.348	2	0.0012098	69479	160511_QHF_FH_JSI12i_2	73.248	50.177			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40812	1637	38413	249955	335131	335131			1	
QELLEALTK	1	Unmodified	1043.5863	0.58627561	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	59.762	59.149	2	0.0099892	53583	160511_QHF_FH_JSI11i_1	50.473	5.7198			0.32058	0.3378	67.357	4	3	Linear	1.262	1.107	NaN	1	1	Median	0.45966	0.54045	NaN	1	1	Median	0.26266	0.25954	NaN	1	0	Median	0.99313	1.0214	NaN	1	1	Median	107060000	65144000	41917000	18015000	9556500	8458800	37819000	24885000	12934000	27096000	17411000	9684400	24132000	13291000	10840000	40813	1023	38414	249956;249957;249958;249959	335132;335133;335134;335135	335132			4	
QELLEEVKK	2	Unmodified	1114.6234	0.6233894	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		9									3	4	2	30.681	29.928	2;3	0.00042097	25226	160511_QHF_FH_JSI11i_2	100.02	72.763			0.63568	0.64932	59.116	8	8	Median	NaN	NaN	NaN	0	0	Median	0.98343	1.2196	103.75	2	2	Median	0.89914	0.89364	50.057	4	4	Median	0.5097	0.55903	9.0827	2	2	Median	383730000	207940000	175790000	0	0	0	80175000	38371000	41804000	241960000	129840000	112120000	61594000	39727000	21867000	40814	1710	38415	249960;249961;249962;249963;249964;249965;249966;249967;249968	335136;335137;335138;335139;335140;335141;335142;335143;335144	335138			9	
QELLELFK	1	Unmodified	1018.5699	0.56989727	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								2			1	79.305	78.103	2	0.0010662	68970	160511_QHF_FH_JSI9i_2	87.181	44.058			0.861	0.94645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.861	0.94645	NaN	1	1	Median	21770000	11187000	10584000	0	0	0	0	0	0	0	0	0	21770000	11187000	10584000	40815	4621	38416	249969;249970;249971	335145;335146;335147	335147			3	
QELNEPPK	1	Unmodified	953.48181	0.48181054	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	1	2	15.351	12.288	2	0.005359	11116	160511_QHF_FH_JSI12i_1	65.88	46.093			0.70977	0.81664	34.415	5	1	Median	NaN	NaN	NaN	0	0	Median	0.57588	0.675	29.976	2	1	Median	1.4279	1.3767	NaN	1	0	Median	0.69016	0.73964	14.007	2	0	Median	284920000	178740000	106180000	0	0	0	237770000	151050000	86720000	1676700	651190	1025500	45475000	27041000	18434000	40816	98	38417	249972;249973;249974;249975;249976	335148;335149;335150	335148			3	
QELPFMATENIIMAMVK	1	Unmodified	1964.9774	0.97736235	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.78	102.65	2	1.7196E-07	90470	160511_QHF_FH_JSI11i_2	124.07	63.813			0.41111	0.44516	4.8244	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42087	0.43023	NaN	1	1	Median	0.40157	0.46061	NaN	1	1	Median	98096000	68349000	29747000	0	0	0	0	0	0	62487000	45483000	17004000	35609000	22866000	12743000	40817	1359	38418	249977;249978	335151;335152	335152			2	
QELQDDK	1	Unmodified	874.40323	0.40322587	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	6.8116	4.1767	2	5.2282E-07	4188	160511_QHF_FH_JSI10i_1	155	91.849			1.0086	0.94642	17.842	6	0	Median	1.1047	0.90467	NaN	1	0	Median	0.69429	0.81332	NaN	1	0	Median	0.96461	0.93083	9.9407	2	0	Median	1.1033	1.1565	21.966	2	0	Median	567650000	307060000	260590000	101000000	51697000	49300000	135590000	80547000	55039000	148580000	76123000	72456000	182480000	98689000	83796000	40818	1016	38419	249979;249980;249981;249982;249983;249984	335153;335154;335155;335156;335157;335158;335159;335160;335161;335162	335157			10	
QELQEEEEQTKPPR	1	Unmodified	1739.8326	0.83260691	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	18.573	18.385	3	0.0013367	15751	160511_QHF_FH_JSI12i_1	56.482	46.014			1.0482	1.1197	6.5903	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0042	1.1731	NaN	1	0	Median	1.0941	1.0687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114910000	54085000	60825000	0	0	0	57206000	26797000	30410000	57704000	27289000	30415000	0	0	0	40819	1148	38420	249985;249986;249987	335163;335164	335164			1	
QELQETQERLEAATQQNQQLR	0	Unmodified	2540.2579	0.25790562	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	49.95	49.396	3	4.7234E-13	42625	160511_QHF_FH_JSI11i_2	120.92	76.104			0.99416	1.1974	37.152	5	1	Median	1.5997	1.4118	NaN	1	0	Median	0.99416	1.1974	NaN	1	0	Median	0.99705	0.97733	53.171	2	1	Median	0.69216	0.70673	NaN	1	0	Median	178130000	92388000	85738000	27818000	11805000	16014000	56807000	30726000	26081000	56622000	28445000	28177000	36878000	21412000	15465000	40820	2270	38421	249988;249989;249990;249991;249992	335165;335166;335167;335168;335169;335170	335167			6	
QELQEVVEFLK	1	Unmodified	1360.7238	0.72383172	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	85.5	84.783	2	0.00039186	73258	160511_QHF_FH_JSI12i_2	88.056	49.281			0.83644	0.71919	20.004	3	3	Plateau	0.83644	0.71919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79822	0.8237	NaN	1	1	Median	0.97576	1.0663	NaN	1	1	Median	62945000	34168000	28777000	20015000	11862000	8152500	0	0	0	21406000	11242000	10164000	21524000	11063000	10461000	40821	4261	38422	249993;249994;249995;249996;249997;249998	335171;335172;335173;335174;335175;335176	335171			6	
QELSFAAR	0	Unmodified	920.47158	0.4715802	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	2	3	1	31.363	30.611	2	0.00033307	26851	160511_QHF_FH_JSI10i_2	111.74	75.344			0.89199	0.91799	14.592	8	3	Median	1.1981	1.0064	12.161	2	0	Median	0.90665	1.075	0.68615	2	1	Median	0.83485	0.81037	11.308	3	2	Median	0.79973	0.90889	NaN	1	0	Median	2238100000	1181500000	1056600000	300190000	132910000	167280000	538210000	290110000	248100000	1106500000	607440000	499030000	293260000	151050000	142200000	40822	1650	38423	249999;250000;250001;250002;250003;250004;250005;250006	335177;335178;335179;335180;335181;335182;335183;335184;335185;335186;335187;335188;335189;335190;335191	335190			15	
QELSFYSIPEFDEWKK	2	Unmodified	2044.9782	0.97820851	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		93.595	93.209	3	0.00021812	82616	160511_QHF_FH_JSI10i_2	60.549	50.761			0.83463	0.94468	26.018	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64023	0.78594	NaN	1	0	Median	1.0881	1.1355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	43779000	21382000	22397000	0	0	0	21345000	12759000	8585400	22434000	8622600	13811000	0	0	0	40823	2197	38424	250007;250008	335192;335193;335194	335194			3	
QELTSQAERAEELGQELK	1	Unmodified	2058.0229	0.022926872	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.325	57.395	3	3.7969E-07	49792	160511_QHF_FH_JSI11i_2	112.55	97.157			1.1707	1.3009	7.4144	4	0	Linear	1.2432	1.053	NaN	1	0	Median	0.95118	1.1727	NaN	1	0	Median	1.2366	1.2549	NaN	1	0	Median	1.1083	1.1966	NaN	1	0	Median	360910000	170910000	190000000	65092000	28137000	36954000	71803000	31474000	40329000	141120000	74556000	66561000	82898000	36742000	46157000	40824	2587	38425	250009;250010;250011;250012	335195;335196;335197;335198	335197			4	
QELVDAFVEHR	0	Unmodified	1341.6677	0.66771383	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.7	6.13		1						2		1		1	1	60.559	52.9	3	2.3625E-05	45161	160511_QHF_FH_JSI12i_2	74.987	71.95			0.92137	1.0298	6.5545	3	1	Plateau	1.1974	0.99735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2219	1.1314	NaN	1	1	Median	0.92053	1.0298	NaN	1	0	Median	73507000	38457000	35050000	1256500	308370	948120	0	0	0	1206600	464470	742130	71044000	37684000	33360000	40825	485	38426	250013;250014;250015	335199;335200;335201;335202	335199			4	
QEMASASSSQR	0	Unmodified	1180.5142	0.51424965	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	5									2	1	1	1	6.2672	5.8868	2	8.5847E-38	3850	160511_QHF_FH_JSI10i_1	202.56	174.35			0.98719	0.93408	16.569	5	2	Median	0.94776	0.77626	16.11	2	2	Median	0.79552	0.93408	NaN	1	0	Median	1.1175	1.0459	NaN	1	0	Median	0.98719	1.0223	NaN	1	0	Median	473650000	250300000	223360000	206010000	112030000	93976000	107820000	60305000	47514000	70379000	35836000	34543000	89451000	42128000	47323000	40826	936	38427	250016;250017;250018;250019;250020	335203;335204;335205;335206;335207	335205			5	
QEMNTLQQK	1	Unmodified	1118.539	0.53900784	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.705	13.268	2	3.0659E-16	10998	160511_QHF_FH_JSI12i_1	172.23	73.236			0.90874	0.85382	21.789	4	0	Median	1.1309	0.92777	NaN	1	0	Median	0.67097	0.78577	NaN	1	0	Median	0.73023	0.72112	NaN	1	0	Median	1.1641	1.1829	NaN	1	0	Median	379940000	177360000	202580000	107180000	45242000	61937000	92699000	52457000	40242000	92849000	52461000	40389000	87217000	27201000	60016000	40827	2560	38428	250021;250022;250023;250024	335208;335209;335210;335211;335212;335213	335209			6	
QEMQEVQSSR	0	Oxidation (M)	1236.5405	0.54046441	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	5.5	4			1	3	2				1	3	3	3	5.7593	1.2662	2	2.908E-44	2046	160513_QHF_FH_JSI12Kac_3	210.64	175.02			0.8791	0.96174	10.344	10	0	Median	1.2463	1.0213	NaN	1	0	Median	0.87562	1.0488	9.1435	3	0	Median	1.0117	0.99782	5.9432	3	0	Median	0.77028	0.82782	7.5992	3	0	Median	2618900000	1308400000	1310500000	452980000	203070000	249910000	676740000	339380000	337360000	697380000	325500000	371880000	791790000	440490000	351300000	40828	1212	38429	250025;250026;250027;250028;250029;250030;250031;250032;250033;250034	335214;335215;335216;335217;335218;335219;335220;335221;335222;335223;335224;335225;335226;335227;335228;335229;335230	335227		846	17	
QEMQEVQSSR	0	Unmodified	1220.5455	0.54554978	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.36	4	5	1		1	3	1			3	3	4	5	11.739	8.9637	2	9.6641E-45	5999	160513_QHF_FH_JSI11Kac_3	215.56	196.47			0.90614	0.98427	19.317	15	3	Median	1.7928	1.5695	25.257	3	1	Median	0.78896	0.94374	7.6816	3	0	Median	1.0469	0.99338	6.0094	4	0	Median	0.8169	0.90668	9.4208	5	2	Median	12197000000	5674200000	6523000000	2190700000	1042400000	1148200000	3505200000	1666000000	1839200000	2531900000	1203100000	1328800000	3969400000	1762700000	2206700000	40829	1212	38429	250035;250036;250037;250038;250039;250040;250041;250042;250043;250044;250045;250046;250047;250048;250049	335231;335232;335233;335234;335235;335236;335237;335238;335239;335240;335241;335242;335243;335244;335245;335246;335247;335248;335249;335250	335236			20	
QEMQSAGSQR	0	Unmodified	1120.4931	0.49312028	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.546	5.1999	2	0.00071109	3208	160511_QHF_FH_JSI12i_1	78.939	32.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40830	1763	38430	250050	335251	335251			1	
QEMVDIIETVYR	0	Unmodified	1494.7388	0.73882986	2121	P83876	TXNL4A	Thioredoxin-like protein 4A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	85.445	84.734	2	3.3738E-07	75339	160511_QHF_FH_JSI10i_2	110.74	78.731			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40831	2121	38431	250051;250052;250053;250054	335252;335253;335254;335255	335254			4	
QENESGYER	0	Unmodified	1110.4578	0.45778063	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.4019	3.1041	2	1.9767E-06	3783	160511_QHF_FH_JSI12i_1	128.81	102.87			0.94569	0.98582	6.7239	7	0	Median	1.2543	1.0479	NaN	1	0	Median	0.87268	0.99636	12.482	2	0	Median	1.0409	1.0128	4.5718	2	0	Median	0.89736	0.95259	4.8494	2	0	Median	738840000	371590000	367250000	145120000	66735000	78390000	210690000	113000000	97696000	212210000	100660000	111550000	170800000	91192000	79611000	40832	4442	38432	250055;250056;250057;250058;250059;250060;250061	335256;335257;335258;335259;335260;335261;335262	335256			7	
QENGASVILR	0	Unmodified	1085.5829	0.58292157	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	32.171	28.99	2	9.7047E-19	24450	160511_QHF_FH_JSI12i_2	169.93	119.81			0.96609	1.0547	8.1685	11	0	Median	1.3094	1.1013	1.9788	2	0	Median	0.92015	1.0965	6.0567	3	0	Plateau	0.96609	0.96382	6.211	3	0	Median	1.0284	1.0924	5.0526	3	0	Median	2259900000	1090000000	1169800000	406200000	179260000	226940000	547830000	284600000	263240000	705510000	331860000	373650000	600330000	294300000	306030000	40833	1327	38433	250062;250063;250064;250065;250066;250067;250068;250069;250070;250071;250072	335263;335264;335265;335266;335267;335268;335269;335270;335271;335272;335273;335274;335275;335276;335277;335278;335279;335280;335281;335282	335266			20	
QENIASGISAK	1	Unmodified	1116.5775	0.57750184	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.647	24.485	2	0.053525	21502	160511_QHF_FH_JSI11i_1	42.788	29.411			0.81991	0.79033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81991	0.79033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29409000	19743000	9666700	0	0	0	0	0	0	29409000	19743000	9666700	0	0	0	40834	3140	38434	250073	335283	335283			1	
QENLPDEIYHVYSFALR	0	Unmodified	2093.0218	0.02180466	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6.67	6.6		2							1		1		2	96.421	93.172	3	0.0056129	85931	160511_QHF_FH_JSI12i_2	34.721	26.121			0.82011	0.88014	70.066	3	3	Median	NaN	NaN	NaN	0	0	Median	0.28453	0.3362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99722	1.0755	28.35	2	2	Median	92392000	56280000	36113000	0	0	0	15882000	13258000	2624100	0	0	0	76510000	43022000	33489000	40835	4463	38435	250074;250075;250076	335284;335285;335286	335284			3	
QENQEAVGGFFSQIGELYVVHHLWAYK	1	Unmodified	3148.5407	0.54066941	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		94.788	87.325	4	2.0539E-14	48664	160513_QHF_FH_JSI9Kac_6	104.14	102.08			0.75541	0.85885	13.837	4	2	Median	1.1317	0.97539	NaN	1	0	Median	0.71592	0.85885	10.881	2	2	Median	0.73816	0.72242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	467290000	269990000	197290000	111740000	52968000	58768000	266300000	156930000	109360000	89254000	60091000	29163000	0	0	0	40836	4336	38436	250077;250078;250079;250080	335287;335288;335289;335290;335291	335288			5	
QENYWLIQYQR	0	Unmodified	1539.747	0.74702678	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	72.485	65.019	2	2.663E-09	35744	160513_QHF_FH_JSI10Kac_6	150.81	101.31			0.653	0.77395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.653	0.77395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17023000	10106000	6916600	0	0	0	17023000	10106000	6916600	0	0	0	0	0	0	40837	3150	38437	250081;250082	335292;335293	335293			2	
QEPLEEDSPSSSSAGLDK	1	Unmodified	1874.8381	0.83814579	1077	P15408	FOSL2	Fos-related antigen 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.727	36.32	2	1.465E-17	32804	160511_QHF_FH_JSI12i_1	169.04	151.23			1.3922	1.3259	43.572	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.51061	0.5801	NaN	1	0	Median	1.3922	1.3259	NaN	1	0	Median	1.0999	1.1136	NaN	1	0	Median	79889000	37999000	41890000	0	0	0	23992000	13382000	10611000	30425000	11532000	18893000	25473000	13086000	12386000	40838	1077	38438	250083;250084;250085	335294;335295;335296;335297	335296			4	
QEPLLIGSTK	1	Unmodified	1084.6128	0.61282471	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.09	5	2				4	3			3	4	3	4	47.722	42.331	2	8.7575E-06	37604	160511_QHF_FH_JSI10i_1	105.98	44.013			0.8438	0.91995	41.133	14	3	Median	1.4887	1.2741	55.831	3	2	Median	0.89704	1.0524	55.204	4	1	Median	0.82493	0.81255	7.6652	3	0	Median	0.79905	0.88022	9.7004	4	0	Median	5494900000	2607400000	2887500000	1651400000	693720000	957710000	1120200000	571250000	548960000	1549600000	761880000	787740000	1173600000	580550000	593080000	40839	1650	38439	250086;250087;250088;250089;250090;250091;250092;250093;250094;250095;250096;250097;250098;250099	335298;335299;335300;335301;335302;335303;335304;335305;335306;335307;335308;335309;335310;335311;335312;335313;335314;335315;335316;335317;335318;335319	335306			22	
QEPPQIDAVK	1	Unmodified	1123.5873	0.58733824	3742	Q8TF01	PNISR	Arginine/serine-rich protein PNISR	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.55	31.973	2	0.034687	28825	160511_QHF_FH_JSI12i_1	46.39	21.514			0.34825	0.35232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34825	0.35232	NaN	1	1	Median	24674000	18179000	6494500	0	0	0	0	0	0	0	0	0	24674000	18179000	6494500	40840	3742	38440	250100	335320	335320			1	
QEPQPQGPPPAAGAVASYDYLVIGGGSGGLASAR	0	Unmodified	3237.6055	0.60545451	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	93.408	92.909	3	5.321E-34	84516	160511_QHF_FH_JSI11i_1	121.82	115.98			1.1057	1.1538	10.12	3	1	Plateau	1.6648	1.3398	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1263	1.1047	NaN	1	0	Median	1.1057	1.1538	NaN	1	0	Median	123880000	59384000	64491000	19428000	4100000	15328000	0	0	0	41211000	19964000	21247000	63237000	35321000	27916000	40841	765	38441	250101;250102;250103;250104	335321;335322;335323;335324;335325;335326;335327	335322			7	
QEPVKPEEGR	1	Unmodified	1167.5884	0.58840088	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	4	3	3	8.4944	8.0744	2;3	9.6262E-05	5724	160511_QHF_FH_JSI11i_2	101.38	77.612			0.85999	0.86527	13.353	10	3	Median	1.0974	0.90371	10.942	2	1	Median	0.84759	1.023	15.604	2	0	Median	0.84991	0.85151	5.2896	3	0	Median	0.83917	0.86332	11.263	3	2	Plateau	1527600000	757880000	769700000	194760000	78497000	116260000	179210000	94148000	85063000	734360000	350750000	383620000	419240000	234480000	184750000	40842	1957	38442	250105;250106;250107;250108;250109;250110;250111;250112;250113;250114;250115;250116;250117	335328;335329;335330;335331;335332;335333;335334;335335;335336;335337;335338;335339	335336			12	
QEPVKPEEGRDMANR	1	Unmodified	1754.837	0.83698078	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	14.546	14.289	3;4	0.00014021	11783	160511_QHF_FH_JSI9i_2	99.566	91.389			0.98462	0.99736	16.883	6	1	Median	1.4306	1.2514	NaN	1	0	Median	0.91405	1.096	NaN	1	0	Median	1.0055	0.96059	4.1024	3	0	Plateau	0.72877	0.75535	NaN	1	1	Median	745020000	393320000	351710000	125310000	54768000	70542000	151170000	84213000	66955000	443820000	241310000	202500000	24726000	13023000	11704000	40843	1957	38443	250118;250119;250120;250121;250122;250123	335340;335341;335342;335343;335344;335345;335346;335347;335348;335349	335343			10	
QEPVKPEEGRDMANR	1	Oxidation (M)	1770.8319	0.8318954	1957	P61586	RHOA	Transforming protein RhoA	yes	yes	0	0	1	2		By MS/MS			2	0		1									1			14.899	14.27	3	0.0027583	11824	160511_QHF_FH_JSI10i_2	64.675	32.607			0.83323	1.0243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83323	1.0243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33636000	14734000	18902000	0	0	0	33636000	14734000	18902000	0	0	0	0	0	0	40844	1957	38443	250124	335350	335350		1627	1	
QEPVRTDDGR	0	Unmodified	1171.5582	0.55816338	2016	P62745	RHOB	Rho-related GTP-binding protein RhoB	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		3								1			2	6.3526	5.8248	2;3	0.0011913	3806	160511_QHF_FH_JSI12i_2	50.284	29.821			1.038	1.1313	23.03	3	0	Median	1.8901	1.6156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0156	1.0899	5.2689	2	0	Median	76573000	37704000	38870000	21261000	11023000	10238000	0	0	0	0	0	0	55312000	26681000	28631000	40845	2016	38444	250125;250126;250127	335351;335352;335353	335351			3	
QEQDLLHK	1	Unmodified	1009.5193	0.51925868	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			15.466	14.796	2	0.0025737	12372	160511_QHF_FH_JSI10i_2	77.318	36.539			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40846	4361	38445	250128	335354	335354			1	
QEQFVDLYK	1	Unmodified	1168.5764	0.57643921	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	52.043	51.377	2	3.9411E-08	45780	160511_QHF_FH_JSI9i_1	128.38	81.301			1.8061	1.8694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8061	1.8694	NaN	1	1	Median	29142000	12329000	16812000	0	0	0	0	0	0	0	0	0	29142000	12329000	16812000	40847	4868	38446	250129;250130	335355;335356	335356			2	
QEQIDNQTR	0	Unmodified	1130.5316	0.53161428	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.1391	7.0279	2	0.0079266	4703	160511_QHF_FH_JSI11i_1	61.691	50.826			0.95339	0.93659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95339	0.93659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44308000	24697000	19612000	0	0	0	0	0	0	44308000	24697000	19612000	0	0	0	40848	2470	38447	250131	335357	335357			1	
QEQIINTMTQDLR	0	Unmodified	1588.7879	0.78790532	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	3	2	2	64.368	63.783	2	8.1217E-06	57817	160511_QHF_FH_JSI10i_1	130.56	88.229			0.8161	0.91398	52.976	8	8	Median	2.7301	2.4145	NaN	1	1	Median	0.59606	0.72722	38.165	3	3	Median	1.0954	1.0702	68.489	2	2	Median	0.88719	0.92843	44.111	2	2	Median	649500000	321130000	328370000	16326000	5309100	11017000	207820000	133730000	74090000	205580000	78922000	126660000	219770000	103170000	116600000	40849	1016	38448	250132;250133;250134;250135;250136;250137;250138;250139	335358;335359;335360;335361;335362;335363;335364;335365	335363			8	
QEQINTEPLEDTVLSPTK	1	Unmodified	2041.0215	0.021529888	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	70.288	69.511	2	2.3881E-16	62928	160511_QHF_FH_JSI10i_1	123.02	99.643			0.81864	0.7312	12.253	2	1	Median	0.98392	0.79738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68113	0.67052	NaN	1	1	Median	36322000	20344000	15978000	24465000	12557000	11908000	0	0	0	0	0	0	11857000	7787000	4069800	40850	293	38449	250140;250141;250142;250143	335366;335367;335368;335369	335368			4	
QEQLETARK	1	Unmodified	1101.5778	0.57783619	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	1	2	5	6.9586	6.6916	2;3	0.00016703	4164	160511_QHF_FH_JSI12i_3	112.84	85.588			0.96196	1.0167	27.554	8	4	Median	1.109	0.96361	17.558	2	1	Median	0.78768	0.96908	NaN	1	1	Median	0.86305	0.8624	48.922	2	1	Median	0.94534	1.0667	26.332	3	1	Median	563250000	293860000	269390000	106370000	46653000	59715000	41768000	23982000	17786000	171240000	97525000	73714000	243870000	125700000	118170000	40851	1558	38450	250144;250145;250146;250147;250148;250149;250150;250151;250152;250153	335370;335371;335372;335373;335374;335375;335376;335377	335376			8	
QEQLLLK	1	Unmodified	870.51747	0.51746776	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.807	33.225	2	0.01211	29964	160511_QHF_FH_JSI12i_1	75.189	24.558			0.35197	0.36086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35197	0.36086	NaN	1	1	Median	54573000	39430000	15143000	0	0	0	0	0	0	0	0	0	54573000	39430000	15143000	40852	1528	38451	250154	335378	335378			1	
QEQQEGPVGPAPSRPALQEK	1	Unmodified	2145.0814	0.081444804	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	31.807	31.066	3	5.517E-09	27186	160511_QHF_FH_JSI10i_2	111.18	97.163			0.8322	0.90683	15.388	6	0	Median	1.1456	0.96669	NaN	1	0	Median	0.71539	0.85136	7.9592	2	0	Median	0.92922	0.91306	NaN	1	0	Median	0.83528	0.88848	31.728	2	0	Median	254530000	131980000	122550000	53545000	22358000	31187000	104600000	59997000	44604000	44335000	26224000	18111000	52048000	23402000	28645000	40853	3720	38452	250155;250156;250157;250158;250159;250160;250161	335379;335380;335381;335382;335383;335384;335385;335386;335387;335388;335389;335390	335390			12	
QEQSYFVR	0	Unmodified	1055.5036	0.50360861	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	4.82	4	5					2			3	2	3	3	27.471	25.077	2	2.1668E-10	21945	160511_QHF_FH_JSI10i_1	167.24	153.08			1.1347	1.1428	11.287	10	1	Median	1.4194	1.2027	4.5651	2	1	Median	0.85431	1.0254	6.5762	2	0	Median	1.1388	1.1166	9.297	3	0	Median	1.0667	1.1592	11.682	3	0	Plateau	1628800000	828940000	799900000	304750000	131820000	172930000	379650000	201260000	178390000	598110000	320180000	277930000	346320000	175670000	170650000	40854	434	38453	250162;250163;250164;250165;250166;250167;250168;250169;250170;250171;250172	335391;335392;335393;335394;335395;335396;335397;335398;335399;335400;335401;335402;335403;335404;335405;335406;335407	335396			17	
QEREPVGTCFLQDGTK	1	Unmodified	1863.8785	0.87851124	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	42.222	42.111	3	0.00035626	37107	160511_QHF_FH_JSI11i_3	73.464	64.181			0.25665	0.24588	125.41	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11088	0.10129	NaN	1	1	Median	0.59407	0.59684	NaN	1	1	Median	121100000	92815000	28281000	0	0	0	0	0	0	91580000	77225000	14354000	29516000	15590000	13926000	40855	859	38454	250173;250174	335408;335409	335408			2	
QERPPVKPFILTR	1	Acetyl (K)	1621.9304	0.93041088	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	1	0	0	2	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	69.226	60.517	3	1.9079E-05	33099	160513_QHF_FH_JSI10Kac_6	100.4	81.985			1.0291	1.2357	45.071	3	0	Median	1.6878	1.4442	NaN	1	0	Median	1.0291	1.2357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57759	0.61923	NaN	1	0	Median	191640000	96925000	94713000	24825000	8974500	15851000	124160000	60649000	63507000	0	0	0	42657000	27302000	15355000	40856	2082	38455	250175;250176;250177	335410;335411	335411	2169		2	
QERYEIEETETVTK	1	Unmodified	1753.837	0.83702358	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	32.583	31.698	3	8.4161E-05	26812	160511_QHF_FH_JSI12i_2	90.707	78.561			0.57993	0.58338	27.375	3	1	Median	NaN	NaN	NaN	0	0	Median	0.38589	0.47903	NaN	1	1	Median	0.57993	0.58338	NaN	1	0	Median	0.74127	0.82277	NaN	1	0	Median	84211000	55937000	28275000	0	0	0	21850000	16127000	5722900	34006000	25458000	8548000	28355000	14352000	14004000	40857	2233	38456	250178;250179;250180;250181	335412;335413;335414;335415	335412			4	
QESDQLVLNQHPASDK	1	Unmodified	1807.8701	0.87005504	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	28.875	28.288	2;3	9.6281E-08	25323	160511_QHF_FH_JSI12i_1	133.16	109.31			0.73289	0.72089	30.048	9	9	Median	0.62745	0.52167	30.523	2	2	Median	0.69322	0.81599	13.924	2	2	Median	0.93635	0.91666	33.976	2	2	Median	0.60881	0.64341	26.436	3	3	Median	1190800000	666220000	524560000	269100000	143170000	125930000	331310000	205550000	125760000	344890000	173860000	171030000	245470000	143650000	101830000	40858	1085	38457	250182;250183;250184;250185;250186;250187;250188;250189;250190	335416;335417;335418;335419;335420;335421;335422;335423;335424	335418			9	
QESEITYLVPWCK	1	Unmodified	1651.7916	0.79159371	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		75.325	75.003	2	0.037294	68211	160511_QHF_FH_JSI11i_1	46.706	29.764			29.483	28.845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29.483	28.845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	463820000	12242000	451580000	0	0	0	0	0	0	463820000	12242000	451580000	0	0	0	40859	5278	38458	250191	335425	335425			1	
QESEPDKLTVGK	2	Acetyl (K)	1371.6882	0.6881745	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					2						1		1	42.587	33.762	2	0.0028118	15250	160513_QHF_FH_JSI10Kac_2	72.434	39.056			1.1558	1.282	2.9874	2	0	Median	NaN	NaN	NaN	0	0	Median	1.083	1.2552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2335	1.3094	NaN	1	0	Median	7004400	3028300	3976200	0	0	0	3186200	1355600	1830700	0	0	0	3818200	1672700	2145500	40860	3004	38459	250192;250193	335426;335427;335428	335426	2739		3	
QESQDLR	0	Unmodified	874.41446	0.41445926	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		5.5223	5.3508	2	0.0098622	3302	160511_QHF_FH_JSI10i_1	82.241	21.269			0.86446	0.93007	12.094	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84617	1.0131	NaN	1	0	Median	0.88315	0.85383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	155900000	83478000	72424000	0	0	0	77727000	41061000	36666000	78176000	42417000	35758000	0	0	0	40861	4525	38460	250194;250195	335429	335429			1	
QESTEYRR	0	Unmodified	1067.4996	0.49958587	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	8.75	6.26		1	1					2			1	2	1	5.2433	-1.1967	2;3	0.00076572	2437	160511_QHF_FH_JSI11i_3	103.35	73.977			0.77792	1.1277	11.06	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77792	0.97211	NaN	1	0	Median	1.1543	1.1277	NaN	1	0	Median	1.0687	1.2068	NaN	1	0	Median	112650000	57641000	55004000	0	0	0	103910000	53676000	50233000	4118100	1987300	2130800	4617700	1977700	2640000	40862	913	38461	250196;250197;250198;250199	335430;335431;335432;335433;335434;335435	335430			6	
QESTSVLLQQSEK	1	Unmodified	1475.7468	0.74675201	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	38.417	34.991	2	5.115E-22	31105	160511_QHF_FH_JSI11i_1	172.74	158.44			1.0428	1.0442	11.236	6	0	Median	1.2135	1.0136	NaN	1	0	Median	0.91192	1.0775	NaN	1	0	Median	0.99496	0.95878	5.7268	2	0	Median	1.116	1.1761	12.607	2	0	Median	404930000	190680000	214240000	95898000	37091000	58807000	96001000	46668000	49332000	112520000	54961000	57556000	100510000	51962000	48548000	40863	2493	38462	250200;250201;250202;250203;250204;250205	335436;335437;335438;335439;335440;335441;335442;335443	335437			8	
QESTVATER	0	Unmodified	1019.4884	0.48835248	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	2	1	2	7.0693	3.2334	2	0.00419	4071	160511_QHF_FH_JSI9i_1	66.962	35.007			0.68234	0.70848	15.646	6	1	Median	0.82243	0.66369	NaN	1	0	Median	0.57771	0.66976	18.293	2	0	Median	0.94053	0.92562	NaN	1	0	Median	0.65844	0.70848	9.067	2	1	Median	576410000	351830000	224580000	176120000	106570000	69548000	183540000	117340000	66206000	8830200	4849000	3981200	207920000	123070000	84847000	40864	4686	38463	250206;250207;250208;250209;250210;250211	335444;335445;335446;335447;335448;335449;335450	335448			7	
QESTVMVLR	0	Unmodified	1061.5539	0.55392962	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		35.388	35.085	2	0.0029556	31388	160511_QHF_FH_JSI11i_1	72.325	38.322			0.80507	0.87037	8.3949	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77745	0.9236	NaN	1	1	Median	0.83368	0.82021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	360140000	202030000	158110000	0	0	0	178490000	101430000	77059000	181650000	100590000	81054000	0	0	0	40865	5315	38464	250212;250213;250214	335451;335452;335453	335451			3	
QETELSPEMISSGSWR	0	Unmodified	1835.836	0.83597772	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.745	69.195	2	3.1909E-16	62803	160511_QHF_FH_JSI11i_1	168.76	160.35			1.1267	1.2369	10.934	4	0	Median	1.4986	1.2282	NaN	1	0	Median	1.0525	1.2463	NaN	1	0	Median	1.0084	0.99691	NaN	1	0	Median	1.206	1.2457	NaN	1	0	Median	370440000	171710000	198730000	61903000	24462000	37441000	111090000	56302000	54784000	101870000	45786000	56082000	95585000	45159000	50426000	40866	5502	38465	250215;250216;250217;250218	335454;335455;335456;335457;335458;335459	335454			6	
QETEVELYNEFPEPIK	1	Unmodified	1963.9415	0.94148865	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	8		2							2	4	2	2	79.385	78.913	2;3	1.2634E-97	71481	160511_QHF_FH_JSI10i_1	303.02	265.84			0.97602	1.0037	2.6101	8	0	Median	1.2339	1.011	1.0828	2	0	Median	0.86451	1.0207	2.3082	2	0	Median	1.0372	1.0105	2.9755	2	0	Median	0.93853	0.97131	1.8035	2	0	Median	1098700000	532290000	566400000	144880000	63134000	81746000	388170000	184910000	203260000	268110000	127860000	140250000	297540000	156390000	141150000	40867	1728	38466	250219;250220;250221;250222;250223;250224;250225;250226;250227;250228	335460;335461;335462;335463;335464;335465;335466;335467;335468;335469;335470;335471;335472;335473;335474;335475;335476;335477;335478;335479;335480;335481;335482;335483	335475			24	
QETQGLQK	1	Unmodified	930.47706	0.47705951	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	7.6662	4.9969	2	2.0121E-05	4808	160511_QHF_FH_JSI12i_1	139.31	69.881			1.0458	1.0969	17.279	6	0	Median	1.0316	0.84267	NaN	1	0	Median	0.79194	0.938	19.298	2	0	Median	1.2013	1.188	8.1762	2	0	Median	1.0602	1.1192	NaN	1	0	Median	897300000	392920000	504380000	222970000	82715000	140250000	220660000	100370000	120290000	238290000	111150000	127140000	215390000	98682000	116700000	40868	4989	38467	250229;250230;250231;250232;250233;250234	335484;335485;335486;335487;335488	335485			5	
QETVADFTPK	1	Unmodified	1134.5557	0.55570376	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	39.935	37.135	2	7.1908E-13	33537	160511_QHF_FH_JSI12i_1	130.98	105.36			0.89011	0.88448	12.621	4	3	Median	0.92681	0.76313	NaN	1	1	Median	0.79999	0.93882	NaN	1	1	Median	0.94915	0.91963	13.943	2	1	Median	NaN	NaN	NaN	0	0	Median	322700000	173070000	149630000	100100000	52501000	47599000	93097000	51046000	42051000	129500000	69522000	59978000	0	0	0	40869	521	38468	250235;250236;250237;250238;250239	335489;335490;335491;335492;335493	335490			5	
QETWMLMELQK	1	Unmodified	1435.684	0.68395752	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.72	79.892	2	5.7011E-07	69071	160511_QHF_FH_JSI12i_2	113.69	79.3			0.97084	1.0615	6.3642	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97084	1.1798	NaN	1	0	Median	1.1769	1.1731	NaN	1	0	Median	0.95646	1.0537	NaN	1	0	Median	159910000	71196000	88710000	0	0	0	49113000	19433000	29680000	52185000	24676000	27509000	58608000	27087000	31521000	40870	1085	38469	250240;250241;250242;250243	335494;335495;335496;335497;335498;335499;335500	335495			7	
QEVALFAAAMR	0	Oxidation (M)	1221.6176	0.61759251	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				64.288	53.608	2	0.0014634	28225	160513_QHF_FH_JSI9Kac_5	83.783	63.083			1.3219	1.1212	NaN	1	1	Median	1.3219	1.1212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1641700	608430	1033300	1641700	608430	1033300	0	0	0	0	0	0	0	0	0	40871	3335	38470	250244	335501	335501		2248	1	
QEVALFAAAMR	0	Unmodified	1205.6227	0.62267789	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		76.977	66.342	2	0.020316	35311	160513_QHF_FH_JSI11Kac_5	66.435	27.286			1.2804	1.2679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2804	1.2679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2983100	1335200	1648000	0	0	0	0	0	0	2983100	1335200	1648000	0	0	0	40872	3335	38470	250245	335502	335502			1	
QEVALFAAAMRKMGVKKGDR	3	Unmodified	2205.1874	0.18744697	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	4	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	65.694	56.55	5	0.060574	30687	160513_QHF_FH_JSI11Kac_6	3.8038	0.56527			0.66173	0.82279	6.5058	4	0	Linear	0.91769	0.79363	NaN	1	0	Median	0.65033	0.7717	NaN	1	0	Median	0.8995	0.85302	NaN	1	0	Median	0.8245	0.88924	NaN	1	0	Median	101090000	54699000	46391000	14122000	6541700	7580700	44194000	25555000	18640000	17850000	9038300	8811800	24923000	13564000	11359000	40873	3335	38471	250246;250247;250248;250249	335503	335503			0	
QEVAPVQYNIVEQNK	1	Unmodified	1757.8948	0.89481323	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	53.776	52.855	2	3.7603E-05	48101	160511_QHF_FH_JSI12i_1	129.34	105.62			0.97846	0.91019	8.9625	2	1	Median	1.0513	0.85429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91066	0.96974	NaN	1	0	Median	44466000	20478000	23988000	21034000	8200800	12833000	0	0	0	0	0	0	23432000	12278000	11154000	40874	5744	38472	250250;250251	335504;335505;335506	335505			3	
QEVAYIGITSSDVVWETK	1	Unmodified	2024.0102	0.01023692	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.15			3			1	1			1	2	1	1	77.805	73.467	3	0.02351	62971	160511_QHF_FH_JSI10i_3	33.308	12.075			0.9491	0.88756	21.168	5	5	Median	0.99541	0.82096	NaN	1	1	Median	0.66804	0.76844	20.382	2	2	Median	1.2065	1.1454	NaN	1	1	Median	0.9491	1.0413	NaN	1	1	Median	155760000	56507000	99251000	41517000	15890000	25626000	44233000	14005000	30229000	56652000	24239000	32413000	13356000	2372900	10983000	40875	4219	38473	250252;250253;250254;250255;250256	335507;335508;335509;335510;335511;335512	335508			6	
QEVCQSYK	1	Unmodified	1040.4597	0.45969489	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.118	9.8825	2	0.005541	7667	160511_QHF_FH_JSI10i_1	62.546	45.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40876	891	38474	250257	335513	335513			1	
QEVEEWVASGNK	1	Unmodified	1374.6416	0.64155866	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.846	38.226	2	6.1252E-53	34231	160511_QHF_FH_JSI10i_1	211.64	161.6			0.78646	0.83643	11.63	4	1	Median	1.1809	0.99426	NaN	1	1	Median	0.70937	0.84302	NaN	1	0	Median	0.84195	0.82988	NaN	1	0	Median	0.73463	0.75092	NaN	1	0	Median	341600000	177870000	163730000	64339000	35966000	28373000	74714000	39646000	35068000	114300000	58473000	55832000	88238000	43784000	44455000	40877	1047	38475	250258;250259;250260;250261	335514;335515;335516;335517;335518;335519;335520	335519			7	
QEVENFKK	2	Unmodified	1020.524	0.52400971	3132	Q6PKG0	LARP1	La-related protein 1	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	11.075	10.671	2	0.0047934	8605	160511_QHF_FH_JSI10i_2	86.833	57.684			0.74307	0.35868	49.994	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.55396	0.66715	NaN	1	1	Median	0.58964	0.60007	71.369	2	2	Median	0.99675	1.0854	NaN	1	1	Median	113680000	66122000	47558000	0	0	0	25887000	19236000	6650200	62455000	36510000	25945000	25338000	10375000	14963000	40878	3132	38476	250262;250263;250264;250265	335521;335522;335523;335524	335524			4	
QEVIRGWEEGVAQMSVGQR	0	Unmodified	2158.0589	0.058935222	2041	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	66.511	65.834	3	0.00016108	56907	160511_QHF_FH_JSI12i_3	73.11	61.05			1.1701	1.3908	33.143	3	3	Plateau	1.0393	0.88973	NaN	1	1	Median	1.1701	1.4372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73465	0.76082	NaN	1	1	Median	106140000	51851000	54289000	37479000	20815000	16664000	45786000	15359000	30426000	0	0	0	22875000	15677000	7198800	40879	2041	38477	250266;250267;250268	335525;335526;335527	335527			3	
QEVISTSSK	1	Unmodified	977.50294	0.50293991	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.23	4	4	2			2				3	2	4	3	12.929	10.526	2	4.2746E-07	9557	160511_QHF_FH_JSI12i_1	138.98	52.022			1.0603	1.0518	16.362	12	0	Median	1.2383	1.0545	3.9077	3	0	Median	0.90987	1.1065	11.386	2	0	Median	1.0603	1.0192	20.498	4	0	Median	1.0034	1.0515	22.975	3	0	Median	14896000000	6642900000	8253200000	3075400000	1322800000	1752700000	3600100000	1612300000	1987800000	3844400000	1740900000	2103400000	4376200000	1966800000	2409300000	40880	2061	38478	250269;250270;250271;250272;250273;250274;250275;250276;250277;250278;250279;250280	335528;335529;335530;335531;335532;335533;335534;335535;335536;335537;335538;335539;335540;335541;335542;335543;335544	335533			17	
QEVPIIIVFR	0	Unmodified	1212.723	0.72304386	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	87.981	77.54	2	0.0011891	40631	160513_QHF_FH_JSI11Kac_5	83.265	72.113			1.172	1.0949	10.708	4	0	Median	1.2424	1.0375	NaN	1	0	Median	0.85102	1.0083	NaN	1	0	Median	1.1686	1.1556	NaN	1	0	Median	1.1753	1.2742	NaN	1	0	Median	15657000	7710000	7947300	3118800	1356900	1761800	3952700	2040900	1911800	5657500	2800800	2856600	2928400	1511400	1417000	40881	1366	38479	250281;250282;250283;250284	335545;335546;335547;335548	335546			3	
QEVPLATLEPLVK	1	Unmodified	1435.8286	0.82863115	4287	Q99574	SERPINI1	Neuroserpin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	84.665	84.098	2	0.0001399	74774	160511_QHF_FH_JSI9i_1	84.658	78.418			1.1026	1.0577	14.321	3	0	Plateau	1.0288	0.85834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1026	1.0577	NaN	1	0	Median	1.1015	1.1291	NaN	1	0	Median	73369000	37957000	35412000	23456000	11656000	11800000	0	0	0	25677000	14177000	11500000	24236000	12124000	12112000	40882	4287	38480	250285;250286;250287	335549;335550;335551;335552	335552			4	
QEVPSWLENMAYEHHYK	1	Unmodified	2159.9735	0.97347426	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7								1	4	4	70.792	70.504	3;4	8.0738E-07	60538	160511_QHF_FH_JSI12i_3	114.29	108.86			1.1541	1.165	15.722	9	3	Median	NaN	NaN	NaN	0	0	Median	0.83825	1.038	NaN	1	0	Median	1.2995	1.2307	19.711	4	1	Median	1.1289	1.1467	12.653	4	2	Median	981430000	426080000	555350000	0	0	0	28336000	13957000	14379000	388500000	157030000	231470000	564590000	255090000	309500000	40883	154	38481	250288;250289;250290;250291;250292;250293;250294;250295;250296	335553;335554;335555;335556;335557;335558;335559;335560;335561;335562;335563;335564;335565	335562			12	
QEVVELLLAR	0	Unmodified	1168.6816	0.68157298	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		77.832	77.2	2	0.026988	67863	160511_QHF_FH_JSI11i_2	54.608	33.101			0.80548	0.76675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80548	0.76675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16954000	11231000	5722800	0	0	0	0	0	0	16954000	11231000	5722800	0	0	0	40884	489	38482	250297	335566	335566			1	
QEWELEEAR	0	Unmodified	1188.5411	0.54111633	5860				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.002	10.213	2	0.0153	7710	160511_QHF_FH_JSI9i_1	54.611	31.258	+		1.1288	0.92325	NaN	1	1	Median	1.1288	0.92325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128670000	57974000	70693000	128670000	57974000	70693000	0	0	0	0	0	0	0	0	0	40885	5860	38483	250298	335567	335567			1	
QEWWWLYIADR	0	Unmodified	1564.7463	0.7462985	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.5	87.779	2	2.1548E-07	50346	160513_QHF_FH_JSI10Kac_6	114.86	80.977			0.62811	0.7562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62811	0.7562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64032000	40009000	24023000	0	0	0	64032000	40009000	24023000	0	0	0	0	0	0	40886	5285	38484	250299	335568;335569	335568			2	
QEWWWLYIADRK	1	Unmodified	1692.8413	0.84126152	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	87.609	79.84	2;3	1.433E-40	45514	160513_QHF_FH_JSI10Kac_6	199.8	188.74			1.1639	1.0149	25.633	5	1	Median	1.1639	1.0149	NaN	1	0	Median	1.0582	1.243	32.493	2	1	Median	0.8437	0.80457	NaN	1	0	Median	1.2187	1.2804	NaN	1	0	Median	1905600000	975540000	930110000	298510000	142030000	156480000	1137700000	611600000	526070000	241100000	134280000	106820000	228380000	87631000	140750000	40887	5285	38485	250300;250301;250302;250303;250304	335570;335571;335572;335573;335574;335575;335576;335577	335575			8	
QEYDESGPSIVHR	0	Unmodified	1515.6954	0.69538514	2062;1916	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261	ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.29	8	11	8				6	8	3	11	11	10	12	29.907	25.713	2;3	3.1565E-117	22529	160511_QHF_FH_JSI10i_2	279.86	255.64			0.83118	0.90381	11.146	43	7	Median	1.2621	1.0552	6.2016	10	2	Median	0.81039	0.97046	6.0734	11	2	Median	0.83563	0.8254	5.6145	10	1	Median	0.81419	0.87168	6.2793	12	2	Median	31847000000	16766000000	15081000000	8124900000	3653500000	4471400000	7982800000	4335000000	3647800000	9469300000	5348500000	4120800000	6270300000	3429500000	2840800000	40888	1916;2062	38486	250305;250306;250307;250308;250309;250310;250311;250312;250313;250314;250315;250316;250317;250318;250319;250320;250321;250322;250323;250324;250325;250326;250327;250328;250329;250330;250331;250332;250333;250334;250335;250336;250337;250338;250339;250340;250341;250342;250343;250344;250345;250346;250347;250348	335578;335579;335580;335581;335582;335583;335584;335585;335586;335587;335588;335589;335590;335591;335592;335593;335594;335595;335596;335597;335598;335599;335600;335601;335602;335603;335604;335605;335606;335607;335608;335609;335610;335611;335612;335613;335614;335615;335616;335617;335618;335619;335620;335621;335622;335623;335624;335625;335626;335627;335628;335629;335630;335631;335632;335633;335634;335635;335636;335637;335638;335639;335640;335641;335642;335643;335644;335645;335646;335647;335648;335649;335650;335651;335652;335653;335654;335655;335656;335657;335658;335659;335660;335661;335662	335647			85	
QEYDESGPSIVHRK	1	Unmodified	1643.7903	0.79034816	2062;1916	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261	ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	6.39		20	19					1	19	19	16	15	9	23.025	19.551	2;3;4	1.1919E-116	16603	160511_QHF_FH_JSI10i_2	263.74	212.46			0.87558	0.91688	22.803	54	12	Median	1.358	1.1136	23.943	17	2	Median	0.82943	0.98189	17.208	14	4	Median	0.72472	0.6944	19.424	14	5	Median	0.86106	0.9306	9.5687	9	1	Median	24355000000	12522000000	11833000000	6150000000	2853400000	3296600000	10404000000	5176400000	5227900000	6254000000	3658800000	2595200000	1546800000	833840000	712910000	40889	1916;2062	38487	250349;250350;250351;250352;250353;250354;250355;250356;250357;250358;250359;250360;250361;250362;250363;250364;250365;250366;250367;250368;250369;250370;250371;250372;250373;250374;250375;250376;250377;250378;250379;250380;250381;250382;250383;250384;250385;250386;250387;250388;250389;250390;250391;250392;250393;250394;250395;250396;250397;250398;250399;250400;250401;250402;250403;250404;250405;250406;250407	335663;335664;335665;335666;335667;335668;335669;335670;335671;335672;335673;335674;335675;335676;335677;335678;335679;335680;335681;335682;335683;335684;335685;335686;335687;335688;335689;335690;335691;335692;335693;335694;335695;335696;335697;335698;335699;335700;335701;335702;335703;335704;335705;335706;335707;335708;335709;335710;335711;335712;335713;335714;335715;335716;335717;335718;335719;335720;335721;335722;335723;335724;335725;335726;335727;335728;335729;335730;335731;335732;335733;335734;335735;335736;335737;335738;335739;335740;335741;335742;335743;335744;335745;335746;335747;335748;335749;335750;335751;335752;335753;335754;335755;335756;335757;335758;335759;335760;335761;335762;335763;335764;335765;335766;335767;335768;335769;335770;335771;335772;335773;335774;335775;335776;335777;335778;335779;335780;335781;335782;335783;335784;335785;335786;335787;335788;335789;335790;335791;335792;335793;335794;335795;335796;335797;335798;335799;335800;335801;335802;335803;335804;335805;335806;335807;335808;335809;335810;335811;335812;335813;335814;335815;335816;335817;335818;335819;335820	335781			156	
QEYEEGGK	1	Unmodified	938.39814	0.39814049	758	O96019	ACTL6A	Actin-like protein 6A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.0232	2.7235	2	0.00032001	3495	160511_QHF_FH_JSI10i_1	112.17	93.441			1.4253	1.3126	19.195	7	1	Median	1.5902	1.3126	NaN	1	0	Median	1.3693	1.6236	30.949	2	1	Median	1.3777	1.3493	6.2947	2	0	Median	1.2238	1.3062	24.692	2	0	Median	878200000	414900000	463300000	157680000	67012000	90667000	228950000	113270000	115680000	209610000	99590000	110020000	281960000	135030000	146930000	40890	758	38488	250408;250409;250410;250411;250412;250413;250414	335821;335822;335823;335824;335825;335826;335827;335828;335829;335830;335831	335826			11	
QEYLDTLYR	0	Unmodified	1199.5823	0.58225287	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	51.908	51.236	2	0.00042676	46276	160511_QHF_FH_JSI11i_1	93.598	76.501			0.71961	0.68926	6.2043	4	0	Linear	0.93536	0.77368	NaN	1	0	Median	0.63931	0.76657	NaN	1	0	Median	0.6993	0.68396	NaN	1	0	Median	0.74051	0.78069	NaN	1	0	Median	342390000	179320000	163070000	76056000	38829000	37227000	82073000	39965000	42109000	122360000	67565000	54796000	61903000	32961000	28941000	40891	1909	38489	250415;250416;250417;250418	335832;335833	335832			2	
QEYLNEYEAEK	1	Unmodified	1414.6252	0.62523989	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	35.061	34.666	2	1.4372E-07	31044	160511_QHF_FH_JSI11i_1	141.88	112.41			1.1523	1.2106	4.7238	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1241	1.3003	NaN	1	0	Median	1.2103	1.1893	NaN	1	0	Median	1.1523	1.2106	NaN	1	0	Median	364630000	175950000	188680000	0	0	0	99494000	46638000	52856000	119350000	64042000	55305000	145790000	65266000	80519000	40892	3936	38490	250419;250420;250421	335834;335835;335836;335837;335838;335839	335834			6	
QEYQAQK	1	Unmodified	893.4243	0.42429566	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		5.9514	-1.3737	2	0.016009	2112	160513_QHF_FH_JSI11Kac_3	74.191	28.309			0.79178	0.83093	10.229	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67408	0.77295	NaN	1	0	Median	0.93003	0.89325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8712200	4296200	4416000	0	0	0	1763400	1090600	672820	6948900	3205600	3743200	0	0	0	40893	3844	38491	250422;250423	335840	335840			1	
QFAAATIQTIGR	0	Unmodified	1275.6935	0.69353465	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	15	0.707							1	2	1		2	1	1	62.33	51.627	2	1.6582E-09	27870	160513_QHF_FH_JSI11Kac_6	120.06	97.931			0.90859	1.0788	30.524	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0553	1.247	20.485	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8195	1.986	NaN	1	0	Median	8244700	3947000	4297700	0	0	0	6512300	3407700	3104600	0	0	0	1732400	539330	1193000	40894	107	38492	250424;250425;250426;250427	335841;335842;335843	335841			3	
QFAALVASK	1	Unmodified	933.52837	0.5283668	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.19	6.42		4	5				1	2	4	5	5	3	3	45.755	40.504	2	0.00017857	33694	160511_QHF_FH_JSI10i_3	104.2	91.209			0.82697	0.85433	54.832	10	5	Median	0.71425	0.60956	27.49	2	2	Median	1.4279	1.6648	49.994	4	2	Linear	1.4995	1.4368	87.328	2	1	Median	1.1434	1.2241	51.615	2	0	Median	777030000	363160000	413870000	185960000	97174000	88782000	78854000	39642000	39212000	167400000	66635000	100760000	344830000	159710000	185120000	40895	4272	38493	250428;250429;250430;250431;250432;250433;250434;250435;250436;250437;250438;250439;250440;250441;250442;250443	335844;335845;335846;335847;335848;335849;335850;335851;335852;335853;335854;335855;335856;335857;335858;335859	335845			16	
QFAEENGLLFLEASAK	1	Unmodified	1765.8887	0.88866522	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	90.842	90.289	2	7.7599E-28	80140	160511_QHF_FH_JSI10i_2	151.54	111.62			0.93654	1.0325	20.964	4	3	Median	0.93991	0.81774	NaN	1	1	Median	0.93318	1.1601	NaN	1	1	Median	0.8992	0.91895	NaN	1	0	Median	1.1904	1.2922	NaN	1	1	Median	161810000	85795000	76013000	30260000	17007000	13253000	29831000	14456000	15375000	62194000	35408000	26786000	39521000	18923000	20598000	40896	1938	38494	250444;250445;250446;250447;250448;250449	335860;335861;335862;335863;335864;335865;335866	335866			7	
QFAEGSTLK	1	Unmodified	979.49746	0.4974606	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	23.244	22.395	2	0.00069719	18588	160511_QHF_FH_JSI11i_2	75.825	50.375			0.85404	1.0124	10.196	4	0	Median	1.3026	1.1005	NaN	1	0	Median	0.82892	1.026	NaN	1	0	Median	0.83232	0.86349	NaN	1	0	Median	0.87632	0.99903	NaN	1	0	Median	250180000	131570000	118610000	52884000	23534000	29351000	40172000	21404000	18768000	91890000	50552000	41338000	65231000	36080000	29151000	40897	4704	38495	250450;250451;250452;250453	335867	335867			1	
QFAEILHFTLR	0	Unmodified	1373.7456	0.74557022	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	2	2	2	81.767	78.456	3	7.1659E-12	39487	160513_QHF_FH_JSI9Kac_6	116.71	94.385			0.88256	0.96317	29.227	8	2	Median	1.2156	1.0083	8.2643	2	0	Median	0.85878	1.0155	5.6988	2	0	Median	0.8868	0.84794	68.752	2	2	Median	0.78798	0.81067	18.365	2	0	Median	774130000	390380000	383740000	156190000	68861000	87332000	375210000	196080000	179130000	124110000	66437000	57671000	118610000	59009000	59606000	40898	5015	38496	250454;250455;250456;250457;250458;250459;250460;250461	335868;335869;335870;335871;335872;335873;335874;335875;335876;335877;335878;335879;335880	335874			13	
QFAEMYVAK	1	Unmodified	1085.5216	0.52156686	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.33	4	4	4			3	3	3	3	4	7	6	7	49.218	43.821	2	9.0122E-12	37343	160511_QHF_FH_JSI12i_2	166.16	156.57			0.9071	0.97109	12.289	24	0	Median	1.2833	1.0794	2.0958	4	0	Median	0.7574	0.90943	14.637	7	0	Median	0.98692	0.94877	6.0049	6	0	Median	0.86944	0.94759	14.403	7	0	Median	21293000000	10279000000	11015000000	3864200000	1637000000	2227100000	5023600000	2565100000	2458400000	6850000000	3574400000	3275700000	5555400000	2502000000	3053400000	40899	1033	38497	250462;250463;250464;250465;250466;250467;250468;250469;250470;250471;250472;250473;250474;250475;250476;250477;250478;250479;250480;250481;250482;250483;250484;250485	335881;335882;335883;335884;335885;335886;335887;335888;335889;335890;335891;335892;335893;335894;335895;335896;335897;335898;335899;335900;335901;335902;335903;335904;335905;335906;335907;335908;335909;335910;335911;335912;335913;335914;335915;335916;335917;335918;335919;335920;335921;335922;335923;335924;335925;335926;335927;335928;335929;335930	335887			50	
QFAEMYVAK	1	Oxidation (M)	1101.5165	0.51648149	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.57	3	6					2	4	1	4	4	4	4	35.598	30.578	2	7.9193E-06	27589	160511_QHF_FH_JSI11i_1	116.37	86.898			1.1767	1.2826	28.816	15	5	Median	1.5636	1.3589	39.365	4	2	Median	1.1069	1.3267	7.3542	4	1	Median	1.3212	1.305	24.829	3	0	Plateau	1.1599	1.2791	31.156	4	2	Median	1249100000	569920000	679170000	99889000	37408000	62481000	355990000	168890000	187100000	255300000	144590000	110700000	537920000	219030000	318890000	40900	1033	38497	250486;250487;250488;250489;250490;250491;250492;250493;250494;250495;250496;250497;250498;250499;250500;250501	335931;335932;335933;335934;335935;335936;335937;335938;335939;335940;335941;335942;335943;335944;335945;335946;335947;335948	335932		639	18	
QFAEMYVAKFAAK	2	Acetyl (K)	1544.7697	0.76973606	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	82.145	72.767	2	4.7232E-109	40051	160513_QHF_FH_JSI11Kac_6	260.59	223.48			0.54637	0.5459	61.929	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36981	0.35232	NaN	1	0	Median	0.80723	0.84585	NaN	1	0	Median	287670000	209940000	77723000	0	0	0	0	0	0	239140000	183490000	55646000	48529000	26452000	22077000	40901	1033	38498	250502;250503	335949;335950;335951;335952	335950	851;856		4	
QFAEMYVAKFAAK	2	Unmodified	1502.7592	0.75917137	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	63.889	63.603	3	0.0034431	54748	160511_QHF_FH_JSI12i_3	56.956	45.264			0.94236	0.96106	87.166	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94236	0.96106	87.166	2	1	Median	149220000	80746000	68477000	0	0	0	0	0	0	0	0	0	149220000	80746000	68477000	40902	1033	38498	250504;250505	335953;335954	335954			2	
QFAFVHMR	0	Unmodified	1034.512	0.51200523	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	3	3	2	3	51.113	44.895	2;3	0.00013391	23949	160513_QHF_FH_JSI9Kac_6	106.36	98.136			0.88471	0.93665	10.499	11	0	Median	1.0573	0.88411	12.383	3	0	Plateau	0.77636	0.93665	6.805	3	0	Median	0.88168	0.85331	0.023755	2	0	Median	0.79757	0.81805	17.267	3	0	Plateau	864380000	425270000	439110000	189340000	91106000	98231000	433920000	210940000	222980000	130400000	63669000	66731000	110720000	59550000	51170000	40903	4197	38499	250506;250507;250508;250509;250510;250511;250512;250513;250514;250515;250516	335955;335956;335957;335958;335959;335960;335961;335962;335963	335959			9	
QFAFVHMR	0	Oxidation (M)	1050.5069	0.50691985	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	39.147	30.008	3	0.00332	16736	160513_QHF_FH_JSI10Kac_6	58.716	50.791			0.88355	0.96497	4.9436	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88355	1.0473	NaN	1	0	Median	1.0041	0.96497	NaN	1	0	Median	0.87191	0.95817	NaN	1	0	Median	58153000	30620000	27533000	0	0	0	33903000	18908000	14995000	10858000	4423700	6433800	13392000	7287800	6104200	40904	4197	38499	250517;250518;250519	335964;335965	335965		2408	2	
QFAIVFK	1	Unmodified	851.49052	0.49052473	1166	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	72.309	62.75	2	0.018472	33941	160513_QHF_FH_JSI11Kac_6	71.852	50.992			0.9201	0.91586	21.791	4	0	Median	0.924	0.76203	28.889	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9118	0.89737	NaN	1	0	Median	0.92848	1.0172	NaN	1	0	Median	46050000	25721000	20329000	16850000	10468000	6382800	0	0	0	16134000	7760700	8373300	13066000	7492500	5573300	40905	1166	38500	250520;250521;250522;250523	335966;335967;335968	335966			3	
QFALAMPEATGDAR	0	Unmodified	1476.7031	0.70311306	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		63.581	62.847	2	8.2378E-06	54816	160511_QHF_FH_JSI11i_2	120.06	91.104			0.98313	0.9086	28.018	2	2	Median	1.2934	1.1077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74726	0.74531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52648000	26401000	26247000	21062000	7680300	13382000	0	0	0	31586000	18721000	12865000	0	0	0	40906	4819	38501	250524;250525	335969;335970	335970			2	
QFAPEYEK	1	Unmodified	1010.4709	0.4709115	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	26.988	26.324	2	0.00028101	21993	160511_QHF_FH_JSI12i_2	113.71	101.94			0.8503	0.86299	9.5552	7	0	Median	0.95498	0.80605	NaN	1	0	Median	0.66748	0.79978	10.757	2	0	Median	0.86739	0.86525	6.3073	2	0	Median	0.88552	0.94689	7.6781	2	0	Median	2273700000	1141800000	1131900000	216160000	94622000	121540000	681870000	384510000	297360000	669690000	316750000	352930000	705990000	345900000	360090000	40907	1034	38502	250526;250527;250528;250529;250530;250531;250532;250533	335971;335972;335973;335974;335975;335976;335977;335978;335979;335980;335981;335982;335983;335984	335974			14	
QFAPIHAEAPEFMEMSVEQEILVTGIK	1	Unmodified	3043.5035	0.50348054	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		4							6	3	2	2	3	97.34	92.469	3;4	5.4358E-84	46487	160513_QHF_FH_JSI12Kac_6	209.4	197.99			1.0074	1.0509	21.175	10	0	Median	1.3644	1.1562	16.742	3	0	Median	0.57625	0.68575	13.677	2	0	Median	1.0861	1.1202	5.6272	2	0	Median	0.82469	0.8823	10.867	3	0	Plateau	2965300000	1560200000	1405000000	643070000	344090000	298980000	509860000	288750000	221110000	1067600000	497660000	569980000	744700000	429750000	314950000	40908	851	38503	250534;250535;250536;250537;250538;250539;250540;250541;250542;250543	335985;335986;335987;335988;335989;335990;335991;335992;335993;335994;335995;335996	335991			12	
QFAPIHAEAPEFMEMSVEQEILVTGIK	1	Oxidation (M)	3059.4984	0.49839517	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	92.907	83.465	3	4.8641E-116	45191	160513_QHF_FH_JSI12Kac_6	232.62	220.69			1.0532	1.1155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.1155	NaN	1	0	Median	53716000	30529000	23187000	0	0	0	0	0	0	0	0	0	53716000	30529000	23187000	40909	851	38503	250544	335997	335997		374	1	
QFASQANVVGPWIQTK	1	Unmodified	1772.921	0.9209684	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	3	4	72.586	71.877	2;3	4.9839E-67	63872	160511_QHF_FH_JSI10i_2	229.97	213.72			1.1415	1.2353	46.997	9	3	Median	0.49122	0.41739	NaN	1	0	Median	0.47819	0.58344	NaN	1	0	Median	1.6396	1.5616	8.7626	3	0	Plateau	0.98582	1.0822	25.811	4	3	Median	522370000	257590000	264780000	51795000	31100000	20695000	54179000	34479000	19700000	208050000	84335000	123720000	208340000	107680000	100670000	40910	361	38504	250545;250546;250547;250548;250549;250550;250551;250552;250553;250554	335998;335999;336000;336001;336002;336003;336004;336005;336006;336007;336008;336009;336010;336011;336012	336009			14	
QFAYQNSWGLTTR	0	Unmodified	1570.7528	0.75284044	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.726	62.629	2	7.1102E-82	52481	160511_QHF_FH_JSI10i_3	243.13	218.28			1.1659	1.2	3.1351	3	0	Median	1.493	1.2053	NaN	1	0	Median	0.97365	1.1392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1659	1.2	NaN	1	0	Median	908860000	405410000	503450000	190480000	69373000	121100000	280370000	142340000	138030000	0	0	0	438010000	193700000	244310000	40911	878	38505	250555;250556;250557;250558	336013;336014;336015;336016;336017;336018	336015			6	
QFCTGEFRK	1	Unmodified	1171.5444	0.54442757	335	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.941	24.602	3	0.047361	19906	160511_QHF_FH_JSI9i_3	16.632	10.399			1.4218	1.1899	NaN	1	0	Median	1.4218	1.1899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34890000	11973000	22918000	34890000	11973000	22918000	0	0	0	0	0	0	0	0	0	40912	335	38506	250559	336019	336019			1	
QFDAGTVNYEQPTK	1	Unmodified	1596.742	0.74200098	1782	P52756	RBM5	RNA-binding protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.579	40.926	2	0.00012532	36251	160511_QHF_FH_JSI9i_1	101.39	83.076			0.71925	0.81603	19.667	3	0	Plateau	0.97207	0.8002	NaN	1	0	Median	0.71925	0.81603	NaN	1	0	Median	1.1456	1.1355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85768000	42964000	42804000	27131000	14073000	13059000	31695000	16349000	15346000	26942000	12542000	14399000	0	0	0	40913	1782	38507	250560;250561;250562	336020;336021;336022;336023;336024	336024			5	
QFDHPHIVK	1	Unmodified	1119.5825	0.58252764	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.27	20.283	3	0.017481	16483	160511_QHF_FH_JSI12i_3	30.564	27.262			0.72207	0.73597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72207	0.73597	NaN	1	0	Median	41529000	19870000	21659000	0	0	0	0	0	0	0	0	0	41529000	19870000	21659000	40914	2229	38508	250563	336025	336025			1	
QFDIQLLTHNDPK	1	Unmodified	1567.7995	0.79945628	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								2	1	2	65.971	65.321	3	0.0037086	56224	160511_QHF_FH_JSI12i_3	43.03	24.434			1.2729	1.2429	40.207	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2208	1.5056	63.918	2	1	Median	1.3311	1.2429	NaN	1	0	Median	0.97997	1.0455	32.408	2	0	Median	380900000	176370000	204520000	0	0	0	105770000	59599000	46170000	117210000	46976000	70238000	157910000	69797000	88117000	40915	1623	38509	250564;250565;250566;250567;250568	336026;336027;336028;336029;336030;336031	336030			6	
QFDVDILISGHTHK	1	Unmodified	1608.826	0.82600539	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	64.626	64.336	3;4	4.4418E-05	55456	160511_QHF_FH_JSI12i_3	70.26	65.868			2.1351	2.0466	16.735	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1351	2.0466	16.735	2	1	Median	58719000	17821000	40898000	0	0	0	0	0	0	0	0	0	58719000	17821000	40898000	40916	5246	38510	250569;250570	336032;336033	336032			2	
QFEDELHPDLK	1	Unmodified	1369.6514	0.65139506	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	45.514	44.602	2;3	9.1127E-09	38355	160511_QHF_FH_JSI11i_2	117.09	99.579			0.97836	0.99344	22.609	5	1	Median	0.92386	0.78557	NaN	1	0	Median	0.69907	0.85331	NaN	1	0	Median	0.97836	0.99344	NaN	1	0	Median	1.1771	1.2597	12.239	2	1	Median	520530000	278330000	242200000	66809000	35458000	31351000	124250000	67117000	57137000	180060000	100140000	79917000	149410000	75608000	73798000	40917	5581	38511	250571;250572;250573;250574;250575;250576	336034;336035;336036	336036			3	
QFEGLADK	1	Unmodified	906.4447	0.44469675	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	27.978	27.617	2	0.01054	24471	160511_QHF_FH_JSI10i_1	63.565	12.599			0.75804	0.88574	31.409	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.75804	0.88574	NaN	1	1	Median	1.1026	1.074	NaN	1	1	Median	1.5869	1.6369	NaN	1	1	Median	147420000	76197000	71220000	0	0	0	57346000	34270000	23076000	43283000	22066000	21217000	46788000	19861000	26927000	40918	622	38512	250577;250578;250579	336037;336038;336039	336039			3	
QFEHLDPQNQHTFEAR	0	Unmodified	1995.9187	0.91873657	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	37.909	37.511	3;4	7.6718E-11	31613	160511_QHF_FH_JSI12i_3	146.3	135.66			1.0062	1.016	14.723	7	0	Median	1.6609	1.4105	NaN	1	0	Median	0.92969	1.1313	NaN	1	0	Median	1.0062	0.95208	13.208	3	0	Plateau	0.97347	0.98946	3.7412	2	0	Median	684030000	358610000	325420000	29036000	9909100	19127000	90205000	49722000	40483000	226690000	125050000	101640000	338100000	173930000	164160000	40919	2195	38513	250580;250581;250582;250583;250584;250585;250586	336040;336041;336042;336043;336044;336045;336046;336047	336046			8	
QFELSEQTK	1	Unmodified	1108.5401	0.5400537	3095	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.811	30.531	2	0.00019707	27221	160511_QHF_FH_JSI10i_1	102.62	55.047			0.9076	0.97677	9.3339	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88104	1.0434	NaN	1	1	Median	0.93495	0.91438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109800000	56116000	53687000	0	0	0	53020000	28519000	24501000	56783000	27597000	29187000	0	0	0	40920	3095	38514	250587;250588	336048;336049	336049			2	
QFEPNDFYLK	1	Unmodified	1299.6136	0.61355299	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	65.226	64.689	2	0.026864	58908	160511_QHF_FH_JSI12i_1	59.153	42.315			1.0026	1.0047	24.447	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88457	0.84524	NaN	1	0	Median	1.1363	1.1943	NaN	1	0	Median	42317000	22624000	19693000	0	0	0	0	0	0	20821000	10766000	10055000	21496000	11857000	9638100	40921	4679	38515	250589;250590	336050	336050			0	
QFESLPATHIR	0	Unmodified	1297.6779	0.67788459	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	40.751	40.174	2;3	4.3178E-05	35135	160511_QHF_FH_JSI11i_3	81.92	71.014			1.4851	1.345	20.189	7	2	Median	1.4999	1.3039	NaN	1	0	Median	1.0998	1.345	NaN	1	0	Median	1.4851	1.3952	23.665	3	1	Median	1.303	1.3602	36.061	2	1	Median	933600000	399330000	534260000	123210000	55361000	67853000	191590000	93585000	98004000	490380000	189110000	301270000	128410000	61279000	67134000	40922	606	38516	250591;250592;250593;250594;250595;250596;250597	336051;336052;336053;336054;336055;336056	336051			5	
QFFKDWK	2	Acetyl (K)	1039.5127	0.51271674	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.879	60.365	2	0.020034	32713	160513_QHF_FH_JSI11Kac_6	82.452	39.329			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40923	1490	38517	250598	336057	336057	1503		1	
QFFLQFHFK	1	Unmodified	1240.6393	0.63931423	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	2	3	4	3	81.113	76.091	2;3	5.9491E-44	38332	160513_QHF_FH_JSI12Kac_6	215.1	170.02			0.93548	0.91439	24.469	12	1	Median	1.0846	0.91307	7.675	2	0	Median	0.87116	1.0354	35.648	3	1	Median	1.002	0.93797	27.581	4	0	Median	0.80497	0.8546	4.5992	3	0	Median	8719200000	3928000000	4791200000	1740400000	685030000	1055400000	4044400000	1767900000	2276500000	1594500000	753350000	841200000	1339800000	721670000	618110000	40924	2672	38518	250599;250600;250601;250602;250603;250604;250605;250606;250607;250608;250609;250610	336058;336059;336060;336061;336062;336063;336064;336065;336066;336067;336068;336069;336070;336071;336072;336073;336074;336075;336076;336077;336078;336079;336080;336081;336082	336080			25	
QFFPTDEDEIGAAK	1	Unmodified	1566.7202	0.72020291	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	61.715	60.985	2	1.8715E-06	55435	160511_QHF_FH_JSI12i_1	131.09	113.22			1.1218	0.93739	24.57	5	3	Median	1.029	0.85597	12.451	2	2	Median	0.78237	0.93739	NaN	1	0	Median	1.4058	1.3649	NaN	1	1	Median	1.3183	1.3438	NaN	1	0	Median	436780000	198130000	238660000	185430000	93282000	92150000	77950000	41293000	36657000	89173000	36511000	52662000	84227000	27041000	57186000	40925	294	38519	250611;250612;250613;250614;250615	336083;336084;336085;336086;336087;336088	336084			6	
QFFSSSLALMHINLSGTK	1	Unmodified	1980.0139	0.01388251	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		93.815	93.167	3	9.8797E-10	77795	160511_QHF_FH_JSI10i_3	133.16	108.11			1.4157	1.1572	48.116	3	3	Median	1.4157	1.1572	NaN	1	1	Median	0.60549	0.70488	NaN	1	1	Median	1.9636	1.8449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	113580000	55184000	58395000	42951000	14272000	28680000	32831000	22614000	10217000	37797000	18298000	19498000	0	0	0	40926	3003	38520	250616;250617;250618	336089;336090;336091;336092;336093	336092			5	
QFFSSSLALMHINLSGTK	1	Oxidation (M)	1996.0088	0.0087971324	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									3	2			1	80.11	71.073	3	8.2783E-05	38458	160513_QHF_FH_JSI9Kac_6	92.932	76.989			0.78473	0.75206	36.562	2	1	Median	0.6787	0.58073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90732	0.97393	NaN	1	0	Median	176030000	107920000	68113000	152650000	92486000	60160000	0	0	0	0	0	0	23385000	15433000	7952600	40927	3003	38520	250619;250620;250621	336094;336095;336096	336095		2180	3	
QFFTKIK	2	Acetyl (K)	952.5382	0.53820321	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	1	0	0	1	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	60.123	50.546	2	0.0024445	27452	160513_QHF_FH_JSI11Kac_6	106.36	48.893			0.50618	0.4835	29.678	3	0	Plateau	1.0124	0.86745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50618	0.48096	NaN	1	0	Median	0.62981	0.68446	NaN	1	0	Median	104940000	72355000	32588000	8813900	4698600	4115300	0	0	0	73980000	53391000	20589000	22149000	14265000	7883900	40928	2738	38521	250622;250623;250624	336097	336097	2657		1	
QFFTLYNTLDDKK	2	Unmodified	1631.8195	0.81952302	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	69.598	69.4	3	0.00033368	60070	160511_QHF_FH_JSI12i_3	73.415	52.462			1.3262	1.2658	21.448	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3262	1.2658	NaN	1	0	Median	1.1159	1.1568	29.429	2	2	Median	123400000	60137000	63266000	0	0	0	0	0	0	42535000	19647000	22888000	80867000	40490000	40377000	40929	2866	38522	250625;250626;250627	336098;336099;336100	336099			3	
QFFVAVER	0	Unmodified	994.52362	0.52361577	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		52.715	51.936	2	0.0050936	45895	160511_QHF_FH_JSI11i_3	66.692	22.884			1.2475	1.2804	6.7971	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2213	1.3435	NaN	1	0	Median	1.2742	1.2204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	209560000	106710000	102850000	0	0	0	29924000	14457000	15466000	179640000	92251000	87385000	0	0	0	40930	1481	38523	250628;250629	336101	336101			1	
QFFVAVEREEWK	1	Unmodified	1566.7831	0.78307794	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	3	1	67.413	63.532	2;3	7.0067E-06	34564	160513_QHF_FH_JSI10Kac_6	99.844	88.574			1.0361	1.1189	44.114	8	2	Median	2.3588	1.9103	54.234	2	1	Median	1.052	1.2356	7.3357	2	0	Median	0.89462	0.84505	25.871	3	0	Median	0.81496	0.85389	NaN	1	1	Median	673710000	327850000	345860000	74037000	17846000	56192000	272940000	132500000	140440000	278170000	146870000	131290000	48562000	30637000	17925000	40931	1481	38524	250630;250631;250632;250633;250634;250635;250636;250637;250638	336102;336103;336104;336105;336106;336107;336108;336109;336110;336111;336112;336113	336113			12	
QFGAQANVIGPWIQTK	1	Unmodified	1756.9261	0.92605378	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							3	3	4	3	80.838	80.19	2;3	1.5767E-27	70693	160511_QHF_FH_JSI9i_2	144.57	131.14			0.79723	0.83346	49.419	11	5	Median	0.52268	0.45172	1.0153	2	1	Median	0.56995	0.71554	19.137	2	1	Median	1.1459	1.185	38.494	4	3	Median	0.79723	0.87506	47.413	3	0	Median	315710000	156620000	159090000	38731000	26967000	11764000	33082000	21875000	11207000	127060000	52924000	74137000	116840000	54853000	61986000	40932	1021	38525	250639;250640;250641;250642;250643;250644;250645;250646;250647;250648;250649;250650;250651	336114;336115;336116;336117;336118;336119;336120;336121;336122;336123;336124;336125;336126;336127	336119			14	
QFGFIVLTTSAGIMDHEEAR	0	Unmodified	2221.0838	0.08375299	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.42		5	9	1					9	7	5	7	5	91.924	87.968	2;3	4.2972E-178	43428	160513_QHF_FH_JSI11Kac_6	351.42	325.95			0.85467	0.93408	25.831	22	7	Median	1.2265	1.0445	5.9668	6	2	Median	0.82288	0.93243	8.3353	5	1	Median	1.1792	1.111	29.279	6	1	Plateau	0.67128	0.70631	25.863	5	3	Median	3691500000	1901300000	1790200000	446020000	188430000	257590000	721130000	422340000	298780000	1414900000	653130000	761810000	1109400000	637360000	472010000	40933	1986	38526	250652;250653;250654;250655;250656;250657;250658;250659;250660;250661;250662;250663;250664;250665;250666;250667;250668;250669;250670;250671;250672;250673;250674;250675	336128;336129;336130;336131;336132;336133;336134;336135;336136;336137;336138;336139;336140;336141;336142;336143;336144;336145;336146;336147;336148;336149;336150;336151;336152;336153;336154;336155;336156;336157;336158;336159;336160;336161;336162;336163;336164;336165	336135			38	
QFGFIVLTTSAGIMDHEEAR	0	Oxidation (M)	2237.0787	0.078667612	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	10.4	6.43			3						4	2	3	1	1	82.833	76.92	3	2.165E-45	41622	160513_QHF_FH_JSI10Kac_6	184.7	172.14			1.2403	1.2085	14.073	6	0	Median	1.4299	1.2085	0.20768	2	0	Median	0.98751	1.1588	25.803	2	0	Median	1.2905	1.2113	NaN	1	0	Median	0.94639	0.9827	NaN	1	0	Median	912910000	445710000	467210000	302510000	109140000	193370000	413030000	227480000	185550000	76728000	45005000	31723000	120640000	64078000	56563000	40934	1986	38526	250676;250677;250678;250679;250680;250681;250682	336166;336167;336168;336169;336170;336171	336171		1651	6	
QFGFMQK	1	Unmodified	884.42146	0.42145889	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			43.444	41.911	2	0.017214	34865	160511_QHF_FH_JSI10i_3	62.842	42.56			2.3445	2.7056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3445	2.7056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71117000	23223000	47894000	0	0	0	71117000	23223000	47894000	0	0	0	0	0	0	40935	2549	38527	250683	336172	336172			1	
QFGGMLLAYSGVQSK	1	Unmodified	1584.797	0.79701344	4339	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.2	6.37			6						4	4	3	2	1	78.177	74.354	2;3	2.8237E-62	38760	160513_QHF_FH_JSI11Kac_6	207.66	184.78			0.95905	0.9517	14.778	10	0	Median	1.0827	0.89295	19.244	4	0	Median	0.84614	0.98149	8.6355	3	0	Plateau	1.0313	0.98198	1.4965	2	0	Median	0.81272	0.80203	NaN	1	0	Median	317720000	158760000	158960000	104020000	52062000	51962000	98037000	49671000	48366000	87969000	41063000	46906000	27690000	15959000	11731000	40936	4339	38528	250684;250685;250686;250687;250688;250689;250690;250691;250692;250693	336173;336174;336175;336176;336177;336178;336179;336180;336181;336182;336183;336184;336185;336186;336187;336188	336180			14	
QFHDSKIK	2	Acetyl (K)	1043.54	0.53999412	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			21.986	15.051	2	0.046624	8882	160513_QHF_FH_JSI10Kac_6	48.794	24.639			0.95966	1.1412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95966	1.1412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6374700	3786200	2588500	0	0	0	6374700	3786200	2588500	0	0	0	0	0	0	40937	2190	38529	250694	336189	336189			1	
QFHKNIIGK	2	Acetyl (K)	1125.6295	0.62947783	2147	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.928	32.331	3	0.00028743	17781	160513_QHF_FH_JSI11Kac_6	92.051	74.578			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40938	2147	38530	250695	336190	336190	2253		1	
QFIAAQGSSR	0	Unmodified	1063.5411	0.54105675	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.11	6.46	1	4	4				2	4	4	4	6	4	5	22.235	17.513	2	4.8046E-14	14847	160511_QHF_FH_JSI12i_3	159.58	106.87			0.9895	1.0618	12.526	18	1	Median	1.3733	1.1757	12.382	4	0	Median	0.918	1.0899	6.5871	6	0	Median	1.0145	0.99317	3.4116	4	1	Median	0.87016	0.93724	15.555	4	0	Median	2272500000	1098100000	1174400000	404160000	172970000	231190000	474630000	255230000	219400000	770800000	360410000	410390000	622920000	309490000	313430000	40939	878	38531	250696;250697;250698;250699;250700;250701;250702;250703;250704;250705;250706;250707;250708;250709;250710;250711;250712;250713;250714	336191;336192;336193;336194;336195;336196;336197;336198;336199;336200;336201;336202;336203;336204;336205;336206;336207;336208;336209;336210;336211;336212;336213;336214;336215;336216;336217;336218;336219;336220;336221	336218			31	
QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR	0	Unmodified	3418.6576	0.65756643	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			70.131	68.964	3	4.9176E-16	57730	160511_QHF_FH_JSI10i_3	72.707	70.728			0.87774	0.88083	2.1613	2	0	Median	0.98891	0.86747	NaN	1	0	Median	0.77906	0.8944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41932000	24690000	17242000	18060000	10599000	7461200	23871000	14091000	9780500	0	0	0	0	0	0	40940	3805	38532	250715;250716	336222;336223;336224;336225	336222			4	
QFIDSNPNQPLVILEMESGASAK	1	Unmodified	2487.2315	0.23153944	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								3	3	4	3	100.18	100.06	2;3	8.2637E-34	90507	160511_QHF_FH_JSI10i_1	211.12	171.49			0.90529	0.8993	19.843	13	4	Median	1.0119	0.85612	28.319	3	2	Median	0.76449	0.8993	3.2128	3	1	Plateau	0.89998	0.8663	18.765	4	1	Median	0.93983	1.0422	14.915	3	0	Median	801520000	430280000	371240000	121120000	64503000	56620000	189970000	99248000	90725000	245020000	136210000	108810000	245410000	130320000	115090000	40941	1664	38533	250717;250718;250719;250720;250721;250722;250723;250724;250725;250726;250727;250728;250729	336226;336227;336228;336229;336230;336231;336232;336233;336234;336235;336236;336237;336238;336239;336240;336241;336242;336243;336244;336245;336246;336247;336248;336249;336250;336251;336252;336253	336240			28	
QFILVMNALDNR	0	Unmodified	1432.7497	0.74966932	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	86.043	81.617	2	1.5347E-62	43378	160513_QHF_FH_JSI10Kac_6	229.73	133.01			0.9493	0.981	25.759	8	1	Median	1.5908	1.3235	30.669	2	0	Median	0.80861	0.95848	34.99	2	1	Median	0.86708	0.81559	5.7538	2	0	Median	0.9493	0.981	1.5465	2	0	Median	1072200000	505020000	567210000	251390000	101170000	150210000	495220000	248710000	246520000	202820000	101310000	101510000	122810000	53834000	68978000	40942	5254	38534	250730;250731;250732;250733;250734;250735;250736;250737	336254;336255;336256;336257;336258;336259;336260;336261;336262;336263;336264;336265;336266	336266			13	
QFILVMNALDNR	0	Oxidation (M)	1448.7446	0.74458394	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	1	0		By MS/MS		By MS/MS	15.7	0.471								1	2		2		1	77.103	68.362	2	1.3493E-15	35643	160513_QHF_FH_JSI12Kac_6	136.5	119.87			1.1472	1.2819	27.623	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79077	0.94562	28.54	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2319	1.311	NaN	1	0	Median	81073000	37392000	43681000	0	0	0	35156000	19069000	16087000	0	0	0	45917000	18323000	27594000	40943	5254	38534	250738;250739;250740	336267;336268;336269	336268		2618	3	
QFINLMLPMK	1	Unmodified	1233.6614	0.66137158	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							3	2	2	1	91.904	91.247	2	7.6402E-26	80156	160511_QHF_FH_JSI11i_2	193.28	151.85			1.2922	1.2198	23.012	8	2	Median	1.3214	1.1388	38.005	3	2	Median	1.1225	1.3234	24.787	2	0	Median	1.3769	1.3397	4.4922	2	0	Median	1.0039	1.1466	NaN	1	0	Median	1693900000	754010000	939910000	319880000	124120000	195760000	383080000	187690000	195390000	694000000	292800000	401200000	296960000	149400000	147570000	40944	2094	38535	250741;250742;250743;250744;250745;250746;250747;250748	336270;336271;336272;336273;336274;336275;336276;336277;336278;336279;336280;336281;336282;336283;336284;336285	336282			16	
QFINLMLPMK	1	Oxidation (M)	1249.6563	0.65628621	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0				By MS/MS	9	7		1							1				2	84.604	83.542	2	0.0014009	72215	160511_QHF_FH_JSI12i_2	90.37	60.897			1.064	1.218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.064	1.218	NaN	1	1	Median	35455000	17789000	17666000	0	0	0	0	0	0	0	0	0	35455000	17789000	17666000	40945	2094	38535	250749;250750	336286;336287	336286		1774	2	
QFIQGPPEVIR	0	Unmodified	1282.7034	0.70337105	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			59.918	59.042	2	1.4722E-13	52189	160511_QHF_FH_JSI10i_2	134.25	98.952			1.2821	1.5641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2821	1.5641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123920000	48675000	75246000	0	0	0	123920000	48675000	75246000	0	0	0	0	0	0	40946	4995	38536	250751;250752	336288;336289	336289			2	
QFITILEATHR	0	Unmodified	1327.7248	0.72483478	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	2	2		1	66.815	60.985	3	5.0275E-06	50112	160511_QHF_FH_JSI9i_3	102.4	98.637			1.1375	1.0825	15.652	5	1	Median	1.3764	1.1497	10.238	2	0	Median	0.94175	1.1267	29.171	2	1	Median	NaN	NaN	NaN	0	0	Median	0.99305	1.0825	NaN	1	0	Median	149520000	72866000	76658000	69318000	29435000	39883000	71076000	39429000	31647000	0	0	0	9129300	4000800	5128500	40947	740	38537	250753;250754;250755;250756;250757	336290;336291;336292;336293;336294;336295	336291			5	
QFLDYFK	1	Unmodified	959.47527	0.4752686	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.27	2	4	4				1	1	3	3	4	4	4	69.172	65.542	2	0.0011191	57300	160511_QHF_FH_JSI11i_2	124.34	97.206			1.015	1.031	16.182	15	2	Median	1.16	1.0075	11.618	3	0	Median	0.8974	1.089	23.851	4	1	Median	1.0054	1.0188	14.501	4	1	Linear	0.97336	1.0288	2.9525	4	0	Median	3829100000	2103100000	1726000000	666900000	338210000	328690000	1016500000	514200000	502260000	1320200000	776510000	543700000	825510000	474190000	351320000	40948	1208	38538	250758;250759;250760;250761;250762;250763;250764;250765;250766;250767;250768;250769;250770;250771;250772	336296;336297;336298;336299;336300;336301;336302;336303;336304;336305;336306;336307;336308;336309;336310;336311;336312;336313;336314;336315;336316;336317;336318	336310			23	
QFLDYFKTEHK	2	Acetyl (K)	1496.73	0.72997974	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		71.171	61.707	2;3	4.0604E-14	33348	160513_QHF_FH_JSI11Kac_6	160.18	125.8			0.25374	0.23937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25374	0.23937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	150310000	134210000	16095000	0	0	0	0	0	0	150310000	134210000	16095000	0	0	0	40949	1208	38539	250773;250774	336319;336320	336320	1083		2	
QFLECAQNQGDIK	1	Unmodified	1549.7195	0.7194914	5726	Q9Y6H1;Q5T1J5	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								3	3	3	2	39.659	38.913	2	1.6992E-15	34915	160511_QHF_FH_JSI10i_1	185.25	150.86			0.81912	0.92904	33.716	8	5	Median	1.9567	1.5562	NaN	1	1	Median	0.72092	0.84996	14.07	2	1	Median	0.58646	0.57021	35.808	3	2	Median	0.92484	0.97056	7.6727	2	1	Median	467110000	273220000	193900000	11623000	3003200	8620100	146030000	86797000	59237000	188040000	117410000	70626000	121420000	66007000	55412000	40950	5726	38540	250775;250776;250777;250778;250779;250780;250781;250782;250783;250784;250785	336321;336322;336323;336324;336325;336326;336327;336328;336329;336330;336331;336332;336333;336334;336335	336326			15	
QFLESSELPR	0	Unmodified	1204.6088	0.60880197	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	52.543	49.58	2	2.4523E-09	43530	160511_QHF_FH_JSI9i_2	128.86	62.236			0.86719	0.86254	6.9108	5	0	Median	1.0226	0.8753	NaN	1	0	Median	0.70005	0.86254	NaN	1	0	Median	0.85861	0.84043	1.402	2	0	Median	0.89617	0.99155	NaN	1	0	Median	647880000	304200000	343690000	118980000	44541000	74437000	133710000	70280000	63433000	217900000	110770000	107130000	177290000	78608000	98685000	40951	444	38541	250786;250787;250788;250789;250790	336336;336337;336338;336339;336340;336341;336342;336343;336344	336339			9	
QFLEVELDQAR	0	Unmodified	1346.683	0.68302954	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.393	73.899	2	0.0087075	67236	160511_QHF_FH_JSI12i_1	49.418	13.907			0.94556	1.1113	9.0565	4	0	Linear	1.5319	1.2642	NaN	1	0	Median	0.99528	1.1554	NaN	1	0	Median	1.1454	1.0688	NaN	1	0	Median	0.98419	1.0307	NaN	1	0	Median	272900000	133050000	139850000	53463000	21641000	31823000	70862000	39056000	31807000	69840000	32170000	37670000	78739000	40186000	38553000	40952	2587	38542	250791;250792;250793;250794	336345;336346;336347	336345			3	
QFLEVWEK	1	Unmodified	1077.5495	0.54949617	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	65.085	64.364	2	0.00042729	55461	160511_QHF_FH_JSI12i_2	103.42	79.991			1.2795	1.2873	46.536	5	2	Median	1.2621	1.0737	NaN	1	0	Median	1.0445	1.2583	NaN	1	0	Median	2.1636	2.1154	70.247	2	1	Median	1.4638	1.6405	NaN	1	1	Median	515160000	214020000	301150000	55130000	27769000	27361000	92799000	46606000	46192000	237160000	83505000	153650000	130080000	56136000	73941000	40953	1040	38543	250795;250796;250797;250798;250799;250800	336348;336349;336350;336351;336352	336350			5	
QFLFDSILK	1	Unmodified	1109.6121	0.61209643	4210	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	93.247	92.72	2	0.0036442	79993	160511_QHF_FH_JSI12i_2	66.621	61.312			0.8731	0.93587	13.809	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80329	0.98022	NaN	1	0	Median	1.2472	1.2125	NaN	1	1	Median	0.8731	0.93587	NaN	1	0	Median	30256000	16199000	14057000	0	0	0	8516000	4510400	4005500	8969100	4547000	4422100	12771000	7141200	5629600	40954	4210	38544	250801;250802;250803	336353;336354	336353			2	
QFLFHWTVNWR	0	Unmodified	1532.7677	0.76770265	3870	Q92685	ALG3	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.469	77.843	3	0.010303	43231	160513_QHF_FH_JSI10Kac_6	48.568	36.592			0.67221	0.7871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67221	0.7871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69282000	40398000	28884000	0	0	0	69282000	40398000	28884000	0	0	0	0	0	0	40955	3870	38545	250804	336355	336355			0	
QFLFRPWDVTK	1	Unmodified	1435.7612	0.76122028	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	3	2	1	78.271	73.565	3	0.00015364	64487	160511_QHF_FH_JSI10i_3	80.69	71.157			0.91606	0.97568	19.665	8	1	Median	0.9956	0.8366	18.291	2	0	Median	0.83562	0.99984	23.685	3	1	Median	1.0226	0.98236	19.31	2	0	Median	1.1262	1.1779	NaN	1	0	Median	719030000	359910000	359120000	123050000	66051000	56994000	325010000	167030000	157980000	221320000	106450000	114870000	49663000	20382000	29281000	40956	1208	38546	250805;250806;250807;250808;250809;250810;250811;250812	336356;336357;336358;336359;336360;336361;336362;336363;336364;336365;336366;336367;336368;336369	336359			14	
QFLIDWVR	0	Unmodified	1075.5815	0.581465	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	85	84.513	2	0.0022449	73349	160511_QHF_FH_JSI12i_3	81.548	38.301			1.0125	0.98517	21.942	4	0	Median	1.31	1.1116	NaN	1	0	Median	0.60264	0.74161	NaN	1	0	Median	0.88959	0.87316	NaN	1	0	Median	1.1524	1.1934	NaN	1	0	Median	52738000	25909000	26828000	9211500	4680300	4531200	9296500	6184000	3112400	11582000	5464000	6118300	22647000	9581000	13066000	40957	3267	38547	250813;250814;250815;250816	336370;336371;336372;336373;336374	336374			5	
QFLIDWVRK	1	Unmodified	1203.6764	0.67642802	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			72.684	71.235	3	0.026383	59664	160511_QHF_FH_JSI10i_3	28.727	22.067			0.78423	0.95229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78423	0.95229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6000800	3741700	2259200	0	0	0	6000800	3741700	2259200	0	0	0	0	0	0	40958	3267	38548	250817;250818	336375;336376	336376			2	
QFLLFLTGSDRIPILGMK	1	Unmodified	2048.1493	0.14925378	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	96.233	87.826	3	1.9789E-11	52067	160513_QHF_FH_JSI10Kac_6	122.31	101.92			0.62312	0.81776	11.266	4	0	Linear	0.99727	0.84182	NaN	1	0	Median	0.67484	0.81173	NaN	1	0	Median	0.70561	0.66043	NaN	1	0	Median	0.76646	0.82383	NaN	1	0	Median	739230000	375430000	363800000	126780000	53006000	73774000	265660000	144710000	120950000	195550000	99520000	96034000	151230000	78194000	73041000	40959	2884	38549	250819;250820;250821;250822	336377;336378;336379;336380	336379			4	
QFLNAGK	1	Unmodified	776.41809	0.41808807	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		19.739	19.199	2	0.02555	16440	160511_QHF_FH_JSI10i_2	54.525	28.416			1.5069	1.6841	56.216	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91662	1.1317	NaN	1	0	Median	2.4774	2.5061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	383690000	183180000	200510000	0	0	0	208400000	126660000	81744000	175290000	56524000	118770000	0	0	0	40960	1791	38550	250823;250824	336381;336382;336383	336382			3	
QFLPFLQR	0	Unmodified	1047.5866	0.58655038	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	78.462	77.731	2	7.3451E-05	69322	160511_QHF_FH_JSI11i_3	132.96	60.822			0.92947	0.93905	10.021	7	0	Median	1.2004	1.0036	8.7695	2	0	Median	0.79609	0.95667	3.3477	2	0	Median	0.943	0.9077	4.8019	2	0	Median	0.77193	0.77161	NaN	1	0	Median	1235100000	597130000	637940000	394320000	168520000	225800000	339490000	183530000	155950000	274390000	128750000	145640000	226870000	116320000	110550000	40961	3213	38551	250825;250826;250827;250828;250829;250830;250831	336384;336385;336386;336387;336388;336389;336390;336391;336392;336393;336394;336395;336396;336397	336385			14	
QFLQAAEAIDDIPFGITSNSDVFSK	1	Unmodified	2712.3283	0.3282766	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	101.77	101.69	3	1.9001E-42	87551	160511_QHF_FH_JSI12i_2	186.06	179.19			1.1428	1.0803	14.846	8	0	Median	1.2683	1.087	NaN	1	0	Median	0.82351	0.98529	0.21774	2	0	Median	1.1901	1.1947	15.105	2	0	Median	1.2407	1.4013	19.531	3	0	Plateau	3771400000	1789000000	1982400000	489950000	218200000	271760000	930630000	502720000	427920000	1025700000	478170000	547510000	1325100000	589930000	735170000	40962	867	38552	250832;250833;250834;250835;250836;250837;250838;250839	336398;336399;336400;336401;336402;336403;336404;336405;336406	336399			9	
QFLQFFHK	1	Unmodified	1093.5709	0.57090032	5068	Q9NWR8	CCDC109B	Calcium uniporter regulatory subunit MCUb, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.416	61.909	3	0.0015198	54391	160511_QHF_FH_JSI11i_3	63.565	49.795			0.48934	0.41837	NaN	1	1	Median	0.48934	0.41837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7866600	4592700	3273900	7866600	4592700	3273900	0	0	0	0	0	0	0	0	0	40963	5068	38553	250840;250841;250842	336407;336408;336409	336407			3	
QFLSQFEMQSR	0	Unmodified	1399.6554	0.65543458	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	59.696	59.056	2	1.2355E-37	50934	160511_QHF_FH_JSI12i_3	198.62	178.34			1.1267	1.1083	68.766	4	1	Median	4.9771	4.3049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2052	1.1507	NaN	1	0	Median	1.013	1.0615	0.7846	2	1	Median	512940000	235860000	277080000	56182000	9737300	46444000	0	0	0	186300000	79696000	106600000	270460000	146430000	124040000	40964	2746	38554	250843;250844;250845;250846	336410;336411;336412;336413;336414;336415	336415			6	
QFLSQFEMQSR	0	Oxidation (M)	1415.6503	0.65034921	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	49.017	48.779	2	0.00057481	41764	160511_QHF_FH_JSI12i_3	72.643	53.863			1.1129	1.1478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1129	1.1478	NaN	1	0	Median	23901000	13779000	10122000	0	0	0	0	0	0	0	0	0	23901000	13779000	10122000	40965	2746	38554	250847	336416	336416		2124	1	
QFLTQLMQK	1	Unmodified	1135.606	0.6059652	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	62.398	61.721	2	4.9834E-12	53246	160511_QHF_FH_JSI12i_3	182.53	165.29			1.0145	1.0163	78.968	5	5	Median	1.5146	1.2831	NaN	1	1	Median	1.103	1.3843	NaN	1	1	Median	0.87972	0.85016	NaN	1	1	Median	0.42439	0.45177	114.65	2	2	Median	1780900000	1138300000	642560000	92034000	46405000	45629000	106050000	70777000	35268000	619990000	409980000	210010000	962810000	611160000	351650000	40966	2676	38555	250848;250849;250850;250851;250852	336417;336418;336419;336420;336421	336421			5	
QFLTQLMQK	1	Oxidation (M)	1151.6009	0.60087982	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	44.375	44.136	2	4.1457E-05	37744	160511_QHF_FH_JSI12i_3	103.56	87.36			0.95921	0.9583	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95921	0.9583	NaN	1	0	Median	42677000	22530000	20147000	0	0	0	0	0	0	0	0	0	42677000	22530000	20147000	40967	2676	38555	250853	336422	336422		2099	1	
QFMAETQFTSGEK	1	Unmodified	1502.6711	0.67114423	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.833	4	4	6							4	4	3	3	48.897	48.058	2	7.6001E-53	41367	160511_QHF_FH_JSI11i_2	217.14	186.88			0.97988	1.0024	22.945	12	3	Median	1.0263	0.85556	13.845	3	1	Plateau	0.83064	1.0065	10.548	3	0	Plateau	1.0822	1.0755	14.205	3	1	Plateau	1.0432	1.1536	32.409	3	1	Median	2504600000	1208500000	1296100000	435280000	217320000	217960000	674160000	364810000	309350000	715640000	336220000	379420000	679510000	290160000	389350000	40968	2536	38556	250854;250855;250856;250857;250858;250859;250860;250861;250862;250863;250864;250865;250866;250867	336423;336424;336425;336426;336427;336428;336429;336430;336431;336432;336433;336434;336435;336436;336437;336438;336439;336440;336441;336442;336443;336444;336445;336446;336447	336441			25	
QFMAETQFTSGEK	1	Oxidation (M)	1518.6661	0.66605885	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	39.436	38.457	2	0.0014485	35007	160511_QHF_FH_JSI12i_1	68.515	54.836			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40969	2536	38556	250868;250869;250870	336448;336449;336450	336449		2000	3	
QFMIFTQSSEK	1	Unmodified	1344.6384	0.63838754	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.65		3	3					1	1	2	3	1	2	63.607	61.277	2	1.5322E-09	54514	160511_QHF_FH_JSI11i_3	133.99	106.88			0.9898	1.1319	30.139	6	3	Median	0.82271	0.6923	NaN	1	1	Median	0.97911	1.1801	14.412	2	1	Median	1.2709	1.2022	NaN	1	0	Median	1.2546	1.3407	35.675	2	1	Median	560320000	271240000	289070000	64650000	36843000	27807000	108030000	56945000	51083000	210630000	104490000	106140000	177010000	72968000	104050000	40970	4091	38557	250871;250872;250873;250874;250875;250876;250877;250878	336451;336452;336453;336454;336455;336456;336457;336458;336459;336460;336461	336453			11	
QFNDHLMPLISSSPK	1	Unmodified	1712.8556	0.85559095	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.416	65.27	3	0.00028509	56440	160511_QHF_FH_JSI12i_3	76.85	64.696			0.97526	0.94449	4.2629	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97626	0.91644	NaN	1	1	Median	0.97426	0.97339	NaN	1	1	Median	124160000	67037000	57128000	0	0	0	0	0	0	46231000	27736000	18495000	77934000	39301000	38633000	40971	141	38558	250879;250880	336462;336463	336463			2	
QFNIYKK	2	Unmodified	939.5178	0.51780212	3139	Q6SJ93	FAM111B	Protein FAM111B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.006	22.988	3	0.020268	18903	160511_QHF_FH_JSI12i_3	39.663	18.963			0.077987	0.079839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.077987	0.079839	NaN	1	1	Median	15678000	12829000	2849300	0	0	0	0	0	0	0	0	0	15678000	12829000	2849300	40972	3139	38559	250881	336464	336464			1	
QFNKLTEDK	2	Acetyl (K)	1163.5823	0.58225287	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	43.473	33.459	2	0.046991	19631	160513_QHF_FH_JSI12Kac_4	51.268	35.653			3.356	3.627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.356	3.627	NaN	1	1	Median	3624800	495610	3129100	0	0	0	0	0	0	0	0	0	3624800	495610	3129100	40973	2380	38560	250882	336465	336465			1	
QFNYTHICAGASAFGK	1	Unmodified	1770.8148	0.81478877	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		2	8						4	3	4	4	3	58.554	54.981	2;3	1.4488E-52	45992	160511_QHF_FH_JSI10i_3	182.15	173.98			0.96618	1.0516	25.338	12	0	Median	1.8698	1.5661	20.506	2	0	Median	0.84957	1.0163	11.601	4	0	Median	0.8361	0.76683	17.417	3	0	Median	1.1231	1.1357	13.331	3	0	Median	2265000000	1192700000	1072300000	153240000	59212000	94030000	525900000	286100000	239790000	844940000	466310000	378630000	740880000	381080000	359810000	40974	1041	38561	250883;250884;250885;250886;250887;250888;250889;250890;250891;250892;250893;250894;250895;250896	336466;336467;336468;336469;336470;336471;336472;336473;336474;336475;336476;336477;336478;336479;336480;336481;336482;336483;336484;336485;336486;336487	336471			22	
QFPFHEMFAAR	0	Unmodified	1379.6445	0.64447597	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	3	0			4							1	1	1	1	66.86	66.044	3	0.012014	58200	160511_QHF_FH_JSI11i_3	28.283	25.245			1.169	1.0122	28.537	4	0	Median	1.109	0.90719	NaN	1	0	Median	0.61642	0.7194	NaN	1	0	Median	1.2323	1.1294	NaN	1	0	Median	1.3376	1.397	NaN	1	0	Median	88680000	41300000	47380000	20365000	10651000	9714100	18073000	7603200	10470000	28221000	13982000	14239000	22021000	9063800	12958000	40975	2836	38562	250897;250898;250899;250900	336488	336488			1	
QFPFLASNYEVIMK	1	Unmodified	1685.8487	0.84871466	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.55	100.4	2	0.0028483	88085	160511_QHF_FH_JSI11i_2	67.879	44.029			0.56853	0.55858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56853	0.55858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11780000	7043400	4736500	0	0	0	0	0	0	11780000	7043400	4736500	0	0	0	40976	708	38563	250901	336489	336489			1	
QFQDAGHFDAENIK	1	Unmodified	1618.7376	0.73758431	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.347	41.426	3	0.00017838	35569	160511_QHF_FH_JSI12i_2	56.851	49.443			0.92222	0.95768	1.2654	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94673	0.94915	NaN	1	0	Median	0.89835	0.96628	NaN	1	0	Median	200870000	103080000	97793000	0	0	0	0	0	0	119140000	57004000	62132000	81735000	46074000	35661000	40977	2470	38564	250902;250903	336490;336491	336490			2	
QFQDLGRK	1	Unmodified	990.52468	0.52467841	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		15.94	15.009	2;3	0.0078079	11994	160511_QHF_FH_JSI10i_3	48.794	13.499			0.37083	0.44155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37083	0.44155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54949000	34082000	20867000	0	0	0	54949000	34082000	20867000	0	0	0	0	0	0	40978	4449	38565	250904;250905	336492;336493	336493			2	
QFQFGHALK	1	Unmodified	1074.5611	0.56106391	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	38.039	37.257	3	4.2254E-05	30439	160511_QHF_FH_JSI9i_3	75.378	67.453			0.89294	0.90515	17.796	4	0	Median	1.5878	1.2651	NaN	1	0	Median	0.8017	0.92203	NaN	1	0	Median	0.92916	0.88858	NaN	1	0	Median	0.85813	0.86098	NaN	1	0	Median	198900000	108420000	90482000	53060000	25920000	27140000	51025000	31464000	19561000	42092000	19866000	22226000	52721000	31166000	21555000	40979	93	38566	250906;250907;250908;250909	336494;336495;336496	336495			3	
QFQFGHALKPQVSSIFTSFLDGLK	2	Unmodified	2694.417	0.41697244	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			94.87	88.053	4	3.3692E-05	51107	160513_QHF_FH_JSI10Kac_6	97.713	70.874			0.62281	0.63911	27.697	3	3	Median	0.62281	0.53106	NaN	1	1	Median	0.64765	0.76497	25.422	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	539480000	333280000	206200000	91011000	44017000	46993000	448470000	289260000	159210000	0	0	0	0	0	0	40980	93	38567	250910;250911;250912	336497;336498;336499	336498			3	
QFQFGHALKPQVSSIFTSFLDGLKK	3	Unmodified	2822.5119	0.51193546	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	2		By MS/MS			16	0									2		2			91.724	86.003	4;5	1.1851E-17	49115	160513_QHF_FH_JSI10Kac_6	105.24	98.738			0.58539	0.68467	36.658	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58539	0.68467	36.658	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	288820000	150620000	138200000	0	0	0	288820000	150620000	138200000	0	0	0	0	0	0	40981	93	38568	250913;250914	336500;336501;336502	336500			3	
QFQFTDWPEQGVPK	1	Unmodified	1705.81	0.81002097	971;2390	Q13332;P10586	PTPRS;PTPRF	Receptor-type tyrosine-protein phosphatase S;Receptor-type tyrosine-protein phosphatase F	no	no	0	0	0	0		By MS/MS			1	0	1										1			77.175	77.008	2	0.0038033	69839	160511_QHF_FH_JSI10i_1	56.087	40.515			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40982	2390;971	38569	250915	336503	336503			1	
QFQLYEEPDTK	1	Unmodified	1396.6511	0.65106071	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	49.79	49.111	2	1.5449E-13	44373	160511_QHF_FH_JSI11i_1	133.75	91.414			0.90548	0.87691	15.6	4	2	Median	0.91345	0.74628	NaN	1	0	Median	0.68799	0.82432	NaN	1	1	Median	1.1419	1.0702	NaN	1	0	Median	0.89758	0.93286	NaN	1	1	Median	294380000	143670000	150720000	69783000	30428000	39355000	77955000	44484000	33471000	67101000	26325000	40776000	79544000	42428000	37116000	40983	384	38570	250916;250917;250918;250919;250920	336504;336505;336506;336507	336504			4	
QFQNAPK	1	Unmodified	831.4239	0.42390173	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		13.372	5.7505	2	0.015792	5545	160513_QHF_FH_JSI11Kac_4	74.396	60.621			0.78748	0.77	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78748	0.77	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11751000	6927100	4823900	0	0	0	0	0	0	11751000	6927100	4823900	0	0	0	40984	479	38571	250921	336508	336508			1	
QFQNVQQVEYSSIR	0	Unmodified	1724.8482	0.84819739	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.444	50.917	2	0.00030778	43931	160511_QHF_FH_JSI11i_2	102.4	80.84			0.96948	0.94581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96948	0.94581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10202000	3307900	6893700	0	0	0	0	0	0	10202000	3307900	6893700	0	0	0	40985	3009	38572	250922	336509	336509			1	
QFQQGAAGNMK	1	Unmodified	1178.5502	0.55024123	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.32	4	8					1			2	3	4	4	16.056	15.536	2	5.5795E-09	12525	160511_QHF_FH_JSI12i_2	122.19	98.033			0.60779	0.70632	44.834	9	9	Median	0.90896	0.79531	94.489	2	2	Median	0.63656	0.77811	13.689	2	2	Median	0.68501	0.67367	19.529	2	2	Median	0.89295	0.58658	55.437	3	3	Plateau	358360000	200240000	158120000	66968000	36864000	30104000	62415000	39054000	23361000	75183000	37635000	37548000	153790000	86690000	67103000	40986	1929	38573	250923;250924;250925;250926;250927;250928;250929;250930;250931;250932;250933;250934;250935	336510;336511;336512;336513;336514;336515;336516;336517;336518;336519;336520;336521;336522	336512			13	
QFSANDK	1	Unmodified	808.37153	0.37153181	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	8.3401	7.9154	2	0.017903	5615	160511_QHF_FH_JSI12i_2	60.76	34.651			1.4371	1.4638	64.263	7	4	Median	0.91866	0.7617	66.099	2	1	Median	1.7167	2.0652	48.682	2	1	Median	3.2131	3.0899	NaN	1	1	Median	1.3215	1.4264	39.359	2	1	Median	2298100000	995770000	1302400000	522930000	244700000	278230000	631530000	278940000	352590000	584760000	210830000	373940000	558930000	261300000	297630000	40987	1460	38574	250936;250937;250938;250939;250940;250941;250942	336523;336524;336525;336526;336527;336528;336529;336530;336531	336524			9	
QFSMFLGK	1	Unmodified	956.47897	0.47897377	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	3	4	3	68.008	63.97	2	0.00068191	55166	160511_QHF_FH_JSI12i_2	100.19	86.031			0.94213	1.0314	36.781	13	1	Median	1.3221	1.1015	22.33	4	0	Median	0.95403	1.11	35.569	3	1	Plateau	1.0738	1.0088	53.007	3	0	Plateau	1.1026	1.1089	46.386	3	0	Plateau	5118300000	2598400000	2519900000	846900000	370880000	476020000	1072100000	630910000	441160000	1555500000	731500000	823970000	1643800000	865090000	778740000	40988	1188	38575	250943;250944;250945;250946;250947;250948;250949;250950;250951;250952;250953;250954;250955;250956	336532;336533;336534;336535;336536;336537;336538;336539;336540;336541;336542;336543;336544;336545;336546;336547;336548;336549;336550;336551;336552;336553;336554;336555;336556;336557	336536			26	
QFSQILK	1	Unmodified	862.49125	0.49125301	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.438	38.258	2	0.014083	32612	160511_QHF_FH_JSI12i_3	67.981	24.857			0.74325	0.74411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74325	0.74411	NaN	1	1	Median	53071000	28859000	24212000	0	0	0	0	0	0	0	0	0	53071000	28859000	24212000	40989	2216	38576	250957	336558	336558			1	
QFSQYIK	1	Unmodified	912.47052	0.47051757	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.43	5	5	4			3	3	4	4	4	9	8	7	38.565	33.429	2	1.7029E-07	17754	160513_QHF_FH_JSI9Kac_6	140.98	83.649			1.0218	1.0198	44.367	28	6	Median	1.176	0.9977	7.1464	4	0	Median	0.83165	0.99573	62.834	9	3	Median	1.1156	1.0725	52.619	8	2	Median	1.0076	1.0539	14.232	7	1	Median	12866000000	6379200000	6486900000	2168100000	1130000000	1038100000	4126600000	1992500000	2134100000	3897200000	1948300000	1948900000	2674200000	1308500000	1365700000	40990	1590	38577	250958;250959;250960;250961;250962;250963;250964;250965;250966;250967;250968;250969;250970;250971;250972;250973;250974;250975;250976;250977;250978;250979;250980;250981;250982;250983;250984;250985	336559;336560;336561;336562;336563;336564;336565;336566;336567;336568;336569;336570;336571;336572;336573;336574;336575;336576;336577;336578;336579;336580;336581;336582;336583;336584;336585;336586;336587;336588;336589;336590;336591;336592;336593;336594;336595;336596;336597;336598;336599;336600;336601;336602	336596			44	
QFSSADEAALK	1	Unmodified	1165.5615	0.56151742	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	32.013	31.464	2	0.00020238	27368	160511_QHF_FH_JSI9i_1	81.017	35.02			0.80418	0.72453	37.904	5	1	Median	0.874	0.71835	NaN	1	0	Median	0.95011	1.1103	60.364	2	1	Median	0.70601	0.69329	NaN	1	0	Median	0.80418	0.82242	NaN	1	0	Median	607370000	334540000	272820000	109790000	50935000	58858000	243190000	136600000	106590000	120990000	69158000	51828000	133400000	77851000	55552000	40991	4852	38578	250986;250987;250988;250989;250990	336603;336604;336605;336606;336607;336608;336609;336610;336611	336610			9	
QFSSASSQQGQEEK	1	Unmodified	1539.6801	0.68012901	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.816	10.23	2	3.5092E-06	7790	160511_QHF_FH_JSI9i_1	124.47	58.969			1.2274	1.1332	20.271	2	2	Median	1.1815	0.98185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2749	1.3078	NaN	1	1	Median	79555000	37036000	42519000	45484000	21567000	23917000	0	0	0	0	0	0	34071000	15469000	18602000	40992	4946	38579	250991;250992	336612;336613	336613			2	
QFSSASSQQGQEEKEEDLK	2	Unmodified	2153.9713	0.97128523	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	23.584	22.375	3	0.029955	18571	160511_QHF_FH_JSI12i_2	33.308	17.002			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11829000	0	11829000	0	0	0	0	0	0	0	0	0	11829000	0	11829000	40993	4946	38580	250993	336614	336614			1	
QFSTDVLK	1	Unmodified	936.49165	0.49164694	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0		By matching	By MS/MS		1.67	0.471	1	2									1	2		42.55	41.949	2	0.022018	36043	160511_QHF_FH_JSI11i_2	44.349	26.964			0.98028	0.9621	17.212	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.56602	0.69875	NaN	1	0	Median	0.93936	0.92393	8.5025	2	0	Median	NaN	NaN	NaN	0	0	Median	127700000	69168000	58536000	0	0	0	28704000	17255000	11448000	99000000	51912000	47088000	0	0	0	40994	213	38581	250994;250995;250996	336615	336615			1	
QFTLALGTTQDENGKK	2	Unmodified	1749.8897	0.88972785	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	48.817	48.698	3	7.3044E-05	41703	160511_QHF_FH_JSI12i_3	83.252	73.846			1.0377	1.0059	17.01	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96138	0.89188	NaN	1	1	Median	1.12	1.1344	NaN	1	1	Median	70266000	22875000	47390000	0	0	0	0	0	0	35420000	11577000	23843000	34846000	11298000	23547000	40995	5104	38582	250997;250998	336616;336617	336617			2	
QFTPCQLLADHANSPNK	1	Unmodified	1939.921	0.92104476	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	55.455	55.334	3	1.5786E-05	47544	160511_QHF_FH_JSI12i_3	91.14	82.827			1.0585	1.0251	47.04	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78507	0.73504	NaN	1	0	Median	1.4271	1.4296	NaN	1	0	Median	269930000	143190000	126740000	0	0	0	0	0	0	146630000	79584000	67043000	123300000	63603000	59700000	40996	1507	38583	250999;251000	336618	336618			1	
QFTSSSSIK	1	Unmodified	983.49238	0.49237523	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.83	4.56	1	4					1			2	1	2	1	18.295	16.488	2	0.00045128	13258	160511_QHF_FH_JSI11i_2	80.455	63.069		+	1.3398	1.281	74.787	6	3	Median	0.81148	0.69283	105.37	2	2	Median	2.6438	3.0785	NaN	1	0	Median	1.0668	1.0698	7.0307	2	0	Median	1.6112	1.7992	NaN	1	1	Median	732170000	395750000	336420000	225160000	133950000	91216000	69026000	22557000	46470000	269210000	138610000	130600000	168770000	100640000	68130000	40997	65	38584	251001;251002;251003;251004;251005;251006	336619;336620;336621;336622;336623;336624	336623			6	
QFTYYPLVEDK	1	Unmodified	1401.6816	0.68163256	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.93	66.631	2	0.00012559	57375	160511_QHF_FH_JSI12i_2	90.827	71.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40998	2157	38585	251007	336625	336625			1	
QFVADVK	1	Unmodified	805.4334	0.43340378	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	26.504	25.956	2	0.018572	23114	160511_QHF_FH_JSI12i_1	54.157	12.655			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40999	5548	38586	251008	336626	336626			1	
QFVDGPPGPVK	1	Unmodified	1139.5975	0.597509	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.283	39.824	2	0.053752	34180	160511_QHF_FH_JSI11i_2	42.743	30.517			0.77161	0.77459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77161	0.77459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25183000	12892000	12291000	0	0	0	0	0	0	25183000	12892000	12291000	0	0	0	41000	4634	38587	251009	336627	336627			1	
QFVEMTR	0	Unmodified	909.43784	0.43783723	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.089	28.18	2	0.0094456	23701	160511_QHF_FH_JSI12i_2	79.116	49.543			0.86695	0.96748	8.052	4	0	Median	1.1354	0.96769	NaN	1	0	Median	0.78072	0.96728	NaN	1	0	Median	0.82856	0.83944	NaN	1	0	Median	0.90713	1.0092	NaN	1	0	Median	764930000	391710000	373220000	156980000	71262000	85719000	179260000	99897000	79363000	256160000	132190000	123970000	172530000	88365000	84169000	41001	1620	38588	251010;251011;251012;251013	336628;336629;336630;336631	336628			4	
QFVFDLHSGK	1	Unmodified	1176.5928	0.59275797	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	55.698	52.29	2;3	2.0047E-06	44895	160511_QHF_FH_JSI12i_2	100.69	76.657			1.0037	1.0242	24.374	13	1	Median	1.0349	0.83617	4.6479	3	0	Plateau	0.83974	1.0242	30.211	3	1	Plateau	1.2089	1.1471	12.895	4	0	Median	1.1407	1.2422	14.806	3	0	Median	977250000	493780000	483470000	120120000	54353000	65766000	215000000	138500000	76503000	332830000	159980000	172850000	309300000	140940000	168360000	41002	4390	38589	251014;251015;251016;251017;251018;251019;251020;251021;251022;251023;251024;251025;251026	336632;336633;336634;336635;336636;336637;336638;336639;336640;336641;336642;336643;336644;336645;336646;336647;336648;336649	336635			17	
QFVFDLHSGKLHR	1	Acetyl (K)	1624.8474	0.84740953	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		69.075	60.438	4	2.2082E-20	32801	160513_QHF_FH_JSI11Kac_6	148.89	134.86			0.45237	0.47864	132.2	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0662	1.219	NaN	1	0	Median	0.19193	0.18794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	54045000	42953000	11092000	0	0	0	12537000	5288300	7249100	41507000	37665000	3842800	0	0	0	41003	4390	38590	251027;251028	336650;336651	336650	3147		1	
QFVKDSIR	1	Acetyl (K)	1033.5556	0.55564418	1907	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	2	1	46.41	36.13	2	0.0039293	21532	160513_QHF_FH_JSI11Kac_4	89.698	49.43			0.4069	0.4245	77.342	4	0	Median	NaN	NaN	NaN	0	0	Median	1.317	1.5957	NaN	1	0	Median	0.31341	0.30988	2.174	2	0	Median	0.52436	0.57264	NaN	1	0	Median	42965000	31690000	11274000	0	0	0	4588800	2006600	2582200	35589000	27793000	7796000	2786500	1890600	895870	41004	1907	38591	251029;251030;251031;251032	336652;336653	336652	1905		2	
QFVSQELVNL	0	Unmodified	1175.6186	0.61863837	2981	Q5VST6	ABHD17B	Alpha/beta hydrolase domain-containing protein 17B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	84.16	83.659	2	0.032296	76209	160511_QHF_FH_JSI12i_1	46.891	34.844			0.56444	0.5591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56444	0.5591	NaN	1	1	Median	12946000	8072700	4873800	0	0	0	0	0	0	0	0	0	12946000	8072700	4873800	41005	2981	38592	251033	336654	336654			1	
QFVTPADVVSGNPK	1	Unmodified	1457.7514	0.75144346	1039;2551	P13797;Q14651	PLS3;PLS1	Plastin-3;Plastin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.94	4.7	5	7	2				3			4	4	6	3	59.612	56.94	2;3	5.7112E-40	50030	160511_QHF_FH_JSI9i_2	240.21	229.05			1.062	1.0194	17.532	17	4	Median	1.2146	1.0146	12.068	4	1	Median	0.76831	0.91946	22.168	4	1	Median	1.1128	1.1072	9.719	6	1	Median	0.90846	1.0046	13.626	3	1	Plateau	3064000000	1540100000	1523900000	530340000	250770000	279570000	413970000	218380000	195590000	1467100000	701410000	765660000	652640000	369580000	283050000	41006	1039;2551	38593	251034;251035;251036;251037;251038;251039;251040;251041;251042;251043;251044;251045;251046;251047;251048;251049;251050	336655;336656;336657;336658;336659;336660;336661;336662;336663;336664;336665;336666;336667;336668;336669;336670;336671;336672;336673;336674;336675;336676;336677;336678;336679;336680;336681;336682;336683	336675			27	
QFVVFEGNHYFYSPYPTK	1	Unmodified	2222.0473	0.047291129	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.66		5	5						14	6	5	7	6	80.995	75.614	2;3;4	4.5656E-190	39432	160513_QHF_FH_JSI11Kac_6	367.33	327.26			1.0728	1.0516	11.185	23	5	Median	1.1167	0.97885	8.5393	5	0	Median	0.78136	0.92104	10.39	5	0	Median	1.2065	1.1297	8.4575	7	3	Median	1.0706	1.1489	7.786	6	2	Median	21005000000	10522000000	10483000000	3463700000	1670000000	1793700000	4982100000	2825400000	2156800000	7145100000	3709300000	3435800000	5414300000	2317700000	3096600000	41007	816	38594	251051;251052;251053;251054;251055;251056;251057;251058;251059;251060;251061;251062;251063;251064;251065;251066;251067;251068;251069;251070;251071;251072;251073;251074	336684;336685;336686;336687;336688;336689;336690;336691;336692;336693;336694;336695;336696;336697;336698;336699;336700;336701;336702;336703;336704;336705;336706;336707;336708;336709;336710;336711;336712;336713;336714;336715;336716;336717;336718;336719;336720;336721;336722;336723;336724;336725;336726;336727;336728;336729;336730;336731;336732;336733;336734;336735;336736;336737;336738	336698			55	
QFVVFEGNHYFYSPYPTKTQTMR	1	Acetyl (K)	2881.3534	0.35338591	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.962	73.646	3	5.9977E-08	40626	160513_QHF_FH_JSI11Kac_6	122.41	108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17601000	17601000	0	0	0	0	0	0	0	17601000	17601000	0	0	0	0	41008	816	38595	251075	336739	336739	464		1	
QFYDQALQQAVVDDDANNAK	1	Unmodified	2252.0346	0.034554191	1906	P60033	CD81	CD81 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	65.419	64.806	2;3	1.0973E-82	58901	160511_QHF_FH_JSI11i_1	292.27	271.31			0.83799	0.90147	11.379	7	4	Median	1.1593	0.94643	18.047	2	2	Median	0.76	0.88797	5.7687	2	1	Median	0.90906	0.88866	19.077	2	1	Median	0.83799	0.90147	NaN	1	0	Median	555340000	273900000	281440000	125780000	51283000	74495000	209520000	123920000	85600000	176600000	76332000	100260000	43446000	22359000	21086000	41009	1906	38596	251076;251077;251078;251079;251080;251081;251082	336740;336741;336742;336743;336744;336745;336746;336747;336748;336749	336740			10	
QFYEPKPDLLPPLK	2	Unmodified	1683.9236	0.92359416	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	2.25	0.433		3	1								1	1	2	75.789	75.061	3	0.0060068	66694	160511_QHF_FH_JSI10i_2	44.196	37.759			0.84594	0.8956	10.908	4	0	Median	NaN	NaN	NaN	0	0	Median	0.84463	1.0324	NaN	1	0	Median	0.84725	0.84373	NaN	1	0	Median	0.83909	0.88013	10.904	2	0	Median	118020000	62558000	55457000	0	0	0	32287000	15877000	16410000	31844000	19189000	12656000	53884000	27493000	26392000	41010	5034	38597	251083;251084;251085;251086	336750;336751	336750			1	
QFYFVHSAGQFK	1	Unmodified	1457.7092	0.70918471	4186	Q96NW4	ANKRD27	Ankyrin repeat domain-containing protein 27	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			62.276	53.911	3	0.00048614	29707	160513_QHF_FH_JSI10Kac_6	72.62	53.562			0.50133	0.58638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50133	0.58638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24224000	16880000	7343500	0	0	0	24224000	16880000	7343500	0	0	0	0	0	0	41011	4186	38598	251087	336752	336752			1	
QFYHLGWVTGTGGGISLK	1	Unmodified	1919.9894	0.98938232	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	2	1	3	81.428	76.311	3	2.6529E-07	70138	160511_QHF_FH_JSI12i_3	82.482	76.208			0.90049	1.0368	22.969	7	0	Median	1.1837	0.98597	41.119	2	0	Median	0.7946	0.92535	16.582	2	0	Median	1.0625	1.0368	NaN	1	0	Median	0.82915	0.86537	30.271	2	0	Median	547570000	301480000	246090000	92283000	37018000	55265000	271820000	169230000	102590000	31657000	18157000	13500000	151810000	77074000	74739000	41012	4101	38599	251088;251089;251090;251091;251092;251093;251094;251095	336753;336754;336755;336756;336757;336758;336759;336760;336761;336762;336763	336761			11	
QFYINVER	0	Unmodified	1067.54	0.53999412	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	50.358	49.665	2	0.00024184	42586	160511_QHF_FH_JSI12i_2	117.04	107.45			0.8713	0.84442	16.863	6	0	Median	1.0822	0.9223	NaN	1	0	Median	0.62332	0.76726	NaN	1	0	Median	0.8713	0.84779	15.099	2	0	Median	0.8924	0.94917	29.015	2	0	Median	1313500000	725600000	587890000	147760000	73341000	74415000	206620000	121780000	84842000	601160000	342450000	258710000	357960000	188040000	169930000	41013	1917;2519	38600	251096;251097;251098;251099;251100;251101	336764;336765;336766;336767;336768;336769;336770;336771	336766			8	
QFYINVEREEWK	1	Unmodified	1639.7995	0.79945628	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.56		8	7						9	6	9	6	3	65.45	61.815	2;3	5.7769E-22	54868	160511_QHF_FH_JSI11i_3	191.53	172.95			1.0226	1.1029	41.601	21	10	Median	1.414	1.2355	49.709	5	2	Median	0.95385	1.1475	42.917	8	3	Median	1.1079	1.0928	40.253	5	3	Median	0.96358	0.97289	26.278	3	2	Median	5296000000	2426100000	2869800000	613960000	260270000	353700000	2119700000	1078400000	1041400000	2267200000	926980000	1340200000	295100000	160520000	134580000	41014	1917;2519	38601	251102;251103;251104;251105;251106;251107;251108;251109;251110;251111;251112;251113;251114;251115;251116;251117;251118;251119;251120;251121;251122;251123;251124;251125	336772;336773;336774;336775;336776;336777;336778;336779;336780;336781;336782;336783;336784;336785;336786;336787;336788;336789;336790;336791;336792;336793;336794;336795;336796;336797;336798;336799;336800;336801;336802;336803;336804;336805;336806;336807;336808;336809;336810;336811	336775			40	
QFYKASQLVSEK	2	Acetyl (K)	1468.7562	0.75619449	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		65.982	55.066	2	0.017021	29808	160513_QHF_FH_JSI11Kac_5	59.542	32.944			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1561200	1561200	0	0	0	0	0	0	0	1561200	1561200	0	0	0	0	41015	4331	38602	251126	336812	336812	3134		1	
QFYPDLIR	0	Unmodified	1050.5498	0.54983053	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	63.033	62.166	2	4.6632E-05	53435	160511_QHF_FH_JSI12i_2	136.16	100.86			1.0171	0.99853	12.428	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79754	0.97938	NaN	1	0	Median	1.0171	0.99853	NaN	1	0	Median	1.1204	1.2256	NaN	1	0	Median	560840000	293980000	266860000	0	0	0	274610000	158510000	116100000	41778000	25628000	16150000	244450000	109840000	134610000	41016	2374	38603	251127;251128;251129	336813;336814;336815;336816	336814			4	
QGAAIGIPYFTAYR	0	Unmodified	1526.7882	0.78816332	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			83.093	82.453	2	5.1165E-05	73275	160511_QHF_FH_JSI10i_2	143.79	107.84			7.3984	9.0817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7.3984	9.0817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	470500000	38001000	432500000	0	0	0	470500000	38001000	432500000	0	0	0	0	0	0	41017	2266	38604	251130	336817	336817			1	
QGAENMIQMYSNGSSK	1	Unmodified	1743.7556	0.75561891	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.977	47.562	2	2.5369E-08	43032	160511_QHF_FH_JSI11i_1	174.9	151.68			1.4694	1.3937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4694	1.3937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25185000	8486600	16699000	0	0	0	0	0	0	25185000	8486600	16699000	0	0	0	41018	2732	38605	251131	336818	336818			1	
QGAFLVNAAR	0	Unmodified	1045.5669	0.56687757	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By matching	2.67	0.471		1	2									2	1	37.441	37.239	2	0.00060748	32499	160511_QHF_FH_JSI11i_3	70.856	66.001			1.1639	1.1498	14.494	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0022	0.99503	20.445	2	1	Median	0.97553	1.013	NaN	1	0	Median	187700000	101980000	85723000	0	0	0	0	0	0	138270000	71074000	67200000	49427000	30904000	18522000	41019	1882	38606	251132;251133;251134	336819;336820	336819			2	
QGAFLVNTAR	0	Unmodified	1075.5774	0.57744226	2395	Q13363	CTBP1	C-terminal-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.098	35.664	2	0.048264	30338	160511_QHF_FH_JSI11i_2	53.517	31.28			1.2226	1.2434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2226	1.2434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59102000	28734000	30369000	0	0	0	0	0	0	59102000	28734000	30369000	0	0	0	41020	2395	38607	251135	336821	336821			1	
QGAHIVGYFSK	1	Unmodified	1205.6193	0.61930707	4772	Q9H7Z6	KAT8	Histone acetyltransferase KAT8	yes	yes	0	0	0	0		By matching	By MS/MS		16	0									2		1	1		45.009	35.872	3	0.0019317	19615	160513_QHF_FH_JSI11Kac_6	44.616	28.726			0.83986	0.90635	31.28	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60703	0.7265	NaN	1	0	Median	1.162	1.1307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12737000	7623900	5113500	0	0	0	7477400	4370200	3107300	5260000	3253700	2006300	0	0	0	41021	4772	38608	251136;251137	336822;336823	336822			2	
QGAIVAVTGDGVNDSPALK	1	Unmodified	1810.9425	0.94249171	821;1032	P05023;P13637	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	58.495	57.794	2;3	1.5272E-82	51380	160511_QHF_FH_JSI9i_1	249.3	224.44			0.98989	0.97968	20.841	9	5	Median	1.2782	1.0398	18.477	3	2	Median	0.76695	0.89512	6.065	2	0	Median	1.0275	1.0119	4.579	2	2	Median	0.72173	0.75571	25.37	2	1	Median	1726400000	874340000	852050000	502750000	206830000	295920000	436020000	248870000	187150000	387850000	192030000	195820000	399770000	226610000	173150000	41022	821;1032	38609	251138;251139;251140;251141;251142;251143;251144;251145;251146;251147;251148	336824;336825;336826;336827;336828;336829;336830;336831;336832;336833;336834;336835;336836;336837	336835			14	
QGANINEIR	0	Unmodified	1013.5254	0.52540669	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.83	4	4	1			3	3			2	5	4	4	23.344	19.676	2	1.4507E-41	16851	160511_QHF_FH_JSI11i_1	215.88	143.93			0.91499	1.0521	18.992	15	0	Median	1.5007	1.2376	7.2104	2	0	Median	0.90505	1.0632	5.6328	5	0	Median	1.1693	1.1626	14.429	4	0	Median	0.76335	0.83241	8.4563	4	0	Median	7207600000	3509700000	3697800000	1580700000	606830000	973870000	1787600000	972570000	815030000	2284000000	1045900000	1238100000	1555300000	884430000	670870000	41023	2656	38610	251149;251150;251151;251152;251153;251154;251155;251156;251157;251158;251159;251160;251161;251162;251163	336838;336839;336840;336841;336842;336843;336844;336845;336846;336847;336848;336849;336850;336851;336852;336853;336854;336855;336856;336857;336858;336859;336860;336861;336862;336863;336864	336839			27	
QGAPGQHSGFEYSR	0	Unmodified	1519.6804	0.68040378	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		4	5						2	1	2	3	5	19.391	17.58	2;3	1.2733E-15	14534	160511_QHF_FH_JSI11i_3	164.88	151.22			0.72299	0.82929	22.188	10	2	Median	1.2396	1.0614	NaN	1	0	Median	0.76802	0.9279	0.36876	2	0	Median	1.0346	0.93255	22.8	3	0	Median	0.65251	0.67797	13.172	4	2	Median	769930000	433740000	336180000	88614000	46329000	42284000	108970000	70307000	38667000	363910000	191550000	172360000	208420000	125560000	82866000	41024	1397	38611	251164;251165;251166;251167;251168;251169;251170;251171;251172;251173;251174	336865;336866;336867;336868;336869;336870;336871;336872;336873;336874;336875;336876;336877;336878;336879;336880	336868			16	
QGAPTSFLPPEASQLKPDR	1	Unmodified	2038.0484	0.048353761	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	1	3	3	65.264	64.593	3	6.4351E-09	55715	160511_QHF_FH_JSI12i_3	109.65	94.722			0.92465	0.96146	27.664	8	6	Median	1.5388	1.3133	4.8401	2	2	Median	0.81229	0.98874	NaN	1	0	Median	0.9297	0.93492	12.029	3	2	Median	0.60757	0.6532	8.7885	2	2	Median	1479100000	713430000	765700000	308150000	124880000	183270000	194460000	95853000	98604000	682820000	321360000	361460000	293700000	171330000	122370000	41025	4442	38612	251175;251176;251177;251178;251179;251180;251181;251182;251183	336881;336882;336883;336884;336885;336886;336887;336888;336889;336890;336891;336892;336893	336892			13	
QGATGFGQGNIR	0	Unmodified	1204.5949	0.59488324	4125	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	23.559	22.627	2	9.0388E-05	19575	160511_QHF_FH_JSI10i_2	91.584	77.377			0.83365	0.96185	47.193	5	1	Median	1.3621	1.194	NaN	1	0	Median	0.83365	1.0374	NaN	1	0	Median	0.73857	0.77051	NaN	1	0	Median	0.53919	0.59029	69.047	2	1	Median	121330000	66557000	54773000	30407000	12315000	18091000	22083000	13262000	8820400	37102000	22677000	14425000	31739000	18303000	13436000	41026	4125	38613	251184;251185;251186;251187;251188;251189	336894;336895;336896;336897;336898;336899;336900;336901;336902	336901			9	
QGDGKWHLVYR	1	Acetyl (K)	1399.6997	0.69968266	4320	Q99829	CPNE1	Copine-1	yes	yes	1	0	0	1	By MS/MS	By matching	By matching	By MS/MS	16	0									4	1	1	1	1	58.126	48.809	3	0.019507	25633	160513_QHF_FH_JSI12Kac_6	33.751	25.647			0.95971	1.042	65.682	4	1	Median	2.6748	2.2835	NaN	1	1	Median	1.3046	1.5649	NaN	1	0	Median	0.70601	0.69378	NaN	1	0	Median	0.53254	0.57348	NaN	1	0	Median	94444000	48256000	46187000	17599000	4879000	12720000	40639000	20881000	19758000	20493000	12148000	8344800	15712000	10348000	5364400	41027	4320	38614	251190;251191;251192;251193	336903;336904	336904	3126		2	
QGDGVDFLSWFLNALHSALGGTK	1	Unmodified	2432.2125	0.21245898	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		103.25	95.737	2;3	4.7529E-189	57662	160513_QHF_FH_JSI10Kac_6	345.93	326.64			1.1323	1.1353	23.647	4	1	Median	1.5025	1.2854	NaN	1	0	Median	0.8373	0.98959	1.8558	2	0	Median	1.6621	1.6156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2748700000	1405700000	1343000000	523090000	202290000	320800000	2139500000	1177300000	962270000	86111000	26210000	59901000	0	0	0	41028	2856	38615	251194;251195;251196;251197	336905;336906;336907;336908;336909;336910;336911	336911			7	
QGDGVDFLSWFLNALHSALGGTKK	2	Unmodified	2560.3074	0.30742199	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			101.11	93.66	4	1.371E-33	53227	160513_QHF_FH_JSI9Kac_6	147.41	139.78			1.2112	1.211	37.576	2	0	Median	1.8902	1.5796	NaN	1	0	Median	0.77616	0.92843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	675210000	362720000	312490000	135390000	51670000	83724000	539810000	311050000	228760000	0	0	0	0	0	0	41029	2856	38616	251198;251199	336912;336913;336914	336912			3	
QGDITEDETIR	0	Unmodified	1275.5943	0.59427411	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	25.735	25.432	2	0.0083974	22539	160511_QHF_FH_JSI12i_1	50.385	33.714			0.83528	0.99022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83528	0.99022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74184000	44337000	29847000	0	0	0	74184000	44337000	29847000	0	0	0	0	0	0	41030	3342	38617	251200;251201	336915;336916;336917;336918	336915			4	
QGDTGDWIGTFLGHK	1	Unmodified	1630.774	0.77396981	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	3	2	3	82.524	81.808	2;3	1.3322E-27	70802	160511_QHF_FH_JSI12i_3	148.85	145.35			0.96653	1.0627	40.461	9	2	Median	1.3037	1.1446	49.742	3	2	Median	1.2268	1.4384	42.804	2	0	Median	1.0858	1.0592	11.51	2	0	Median	0.63287	0.66495	4.2829	2	0	Median	1511000000	765650000	745370000	162520000	69069000	93449000	291820000	128350000	163470000	497780000	221790000	275990000	558900000	346440000	212460000	41031	5595	38618	251202;251203;251204;251205;251206;251207;251208;251209;251210;251211;251212	336919;336920;336921;336922;336923;336924;336925;336926;336927;336928;336929;336930;336931;336932;336933;336934;336935;336936;336937;336938;336939;336940;336941;336942;336943;336944;336945;336946	336946			28	
QGDTILVSGMK	1	Unmodified	1147.5907	0.59070906	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		42.822	42.411	2	0.0023745	38215	160511_QHF_FH_JSI11i_1	61.344	46.193			1.2775	1.5088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2775	1.5088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172950000	66445000	106510000	0	0	0	172950000	66445000	106510000	0	0	0	0	0	0	41032	3734	38619	251213;251214	336947;336948	336947			2	
QGEDNSTAQDTEELEK	1	Unmodified	1792.7599	0.75989547	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	22.616	22.082	2	1.7559E-72	19384	160511_QHF_FH_JSI12i_1	278.64	262.67			1.0628	0.98643	21.611	8	8	Median	1.365	1.1317	24.649	2	2	Median	0.92039	1.0837	30.031	2	2	Median	0.95466	0.91291	24.973	2	2	Median	0.88412	0.90171	17.916	2	2	Median	1230700000	652010000	578710000	285050000	129520000	155530000	289500000	153910000	135590000	302910000	157660000	145240000	353270000	210920000	142350000	41033	3323	38620	251215;251216;251217;251218;251219;251220;251221;251222	336949;336950;336951;336952;336953;336954;336955;336956	336952			8	
QGEEEDAEIIVK	1	Unmodified	1358.6565	0.65654002	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.417	38.79	2	3.9208E-54	34854	160511_QHF_FH_JSI10i_1	224.66	179.29			0.91581	0.88984	15.217	4	0	Median	1.061	0.85994	NaN	1	0	Median	0.79125	0.92078	NaN	1	0	Median	1.06	1.0276	NaN	1	0	Median	0.68357	0.71508	NaN	1	0	Median	1048200000	547230000	500990000	174600000	89136000	85468000	336510000	178030000	158480000	299810000	150130000	149680000	237310000	129940000	107370000	41034	5315	38621	251223;251224;251225;251226	336957;336958;336959;336960;336961;336962;336963;336964;336965;336966	336963			10	
QGEEVFQSLSK	1	Unmodified	1250.6143	0.61428128	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	45.097	44.163	2	0.0027604	40160	160511_QHF_FH_JSI12i_1	71.159	58.581			0.54311	0.49637	22.074	2	1	Median	0.70327	0.58022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41942	0.42464	NaN	1	1	Median	216540000	126760000	89780000	84982000	44300000	40682000	0	0	0	0	0	0	131560000	82464000	49098000	41035	3860	38622	251227;251228	336967;336968	336967			1	
QGELENYVSDGYK	1	Unmodified	1500.6733	0.67325272	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.078	46.42	2	0.0031988	42229	160511_QHF_FH_JSI12i_1	63.944	45.885			0.70738	0.72562	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70738	0.72562	NaN	1	1	Median	24214000	12458000	11756000	0	0	0	0	0	0	0	0	0	24214000	12458000	11756000	41036	5478	38623	251229	336969	336969			1	
QGEQETKNR	1	Acetyl (K)	1130.5316	0.53161428	2924	Q5SQI0	ATAT1	Alpha-tubulin N-acetyltransferase 1	yes	yes	1	0	0	1				By MS/MS	13.5	0.5						1	1						2	5.7	-1.6532	2	0.0089291	1870	160513_QHF_FH_JSI12Kac_3	63.216	33.049			0.68233	0.7411	61.423	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68233	0.7411	61.423	2	0	Median	13847000	7942300	5904700	0	0	0	0	0	0	0	0	0	13847000	7942300	5904700	41037	2924	38624	251230;251231	336970	336970	2717		1	
QGESEVSR	0	Unmodified	890.40937	0.40937388	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0013	4.6873	2	0.0017379	2632	160511_QHF_FH_JSI10i_1	98.582	74.61			1.2395	1.216	34.841	4	3	Median	1.494	1.2146	NaN	1	1	Median	1.0284	1.2174	NaN	1	1	Median	1.526	1.4876	NaN	1	1	Median	0.62804	0.66522	NaN	1	0	Median	2763300000	1363400000	1400000000	296360000	131430000	164920000	879900000	436590000	443300000	823600000	359040000	464560000	763460000	436300000	327170000	41038	2252	38625	251232;251233;251234;251235	336971;336972;336973;336974	336973			4	
QGESSGDMAWEEVR	0	Unmodified	1579.6573	0.65728508	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			43.707	43.289	2	0.0014973	38905	160511_QHF_FH_JSI10i_1	59.871	49.917			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41039	3146	38626	251236	336975	336975			1	
QGEVIVSIEEKPK	2	Unmodified	1454.7981	0.7980593	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	39.754	38.846	3	0.0005977	33274	160511_QHF_FH_JSI12i_2	63.212	51.236			0.62451	0.65095	38.08	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84947	0.85209	NaN	1	0	Median	0.45912	0.49729	NaN	1	0	Median	105050000	65959000	39087000	0	0	0	0	0	0	59825000	38632000	21193000	45220000	27326000	17893000	41040	1649	38627	251237;251238	336976	336976			1	
QGEYGLASICNGGGGASAMLIQK	1	Unmodified	2281.0831	0.083101063	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	75.98	75.562	3	4.0477E-11	68887	160511_QHF_FH_JSI12i_1	99.93	90.766			0.83482	0.83065	36.164	4	1	Median	NaN	NaN	NaN	0	0	Median	1.276	1.4836	NaN	1	0	Median	0.7201	0.70166	13.602	2	1	Median	0.84025	0.89318	NaN	1	0	Median	159690000	83169000	76521000	0	0	0	48651000	20012000	28639000	70513000	42549000	27965000	40525000	20608000	19918000	41041	1249	38628	251239;251240;251241;251242	336977;336978;336979;336980	336978			4	
QGFDFLCMPVFHPR	0	Unmodified	1749.812	0.811952	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.661	98.671	3	9.995E-05	87888	160511_QHF_FH_JSI11i_3	55.335	51.164			0.95746	0.94602	0.090078	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	0.94663	NaN	1	0	Median	0.90842	0.94542	NaN	1	1	Median	82527000	40698000	41829000	0	0	0	0	0	0	35721000	16605000	19115000	46807000	24093000	22714000	41042	197	38629	251243;251244	336981;336982	336981			2	
QGFDLNVPGGEIDASLK	1	Unmodified	1758.8788	0.87882882	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	83.261	82.883	2	2.1038E-15	75238	160511_QHF_FH_JSI10i_1	164.88	121.8			0.97122	0.94461	27.889	5	4	Median	NaN	NaN	NaN	0	0	Median	0.72099	0.8464	NaN	1	0	Median	1.083	1.0442	14.178	2	2	Median	0.73774	0.74641	42.055	2	2	Median	153860000	84366000	69499000	0	0	0	58256000	33503000	24752000	35702000	18025000	17677000	59907000	32837000	27070000	41043	2286	38630	251245;251246;251247;251248;251249	336983;336984;336985;336986;336987;336988	336988			6	
QGFGELLQAVPLADSFR	0	Unmodified	1846.9577	0.95774784	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	101.64	101.55	2;3	8.517E-117	87396	160511_QHF_FH_JSI12i_2	276.31	236.3			0.84271	0.95034	29.363	10	0	Median	1.721	1.4545	2.2947	2	0	Median	0.82728	1.016	16.049	2	0	Median	1.0648	1.0826	11.831	2	0	Median	0.67527	0.71067	6.8977	4	0	Median	2854000000	1452300000	1401700000	513100000	195210000	317890000	638050000	326440000	311610000	637600000	272990000	364600000	1065300000	657690000	407570000	41044	1294	38631	251250;251251;251252;251253;251254;251255;251256;251257;251258;251259	336989;336990;336991;336992;336993;336994;336995;336996;336997;336998	336989			10	
QGFGNLPICMAK	1	Unmodified	1334.6475	0.64751243	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.515	68.915	2	0.0002575	60233	160511_QHF_FH_JSI11i_2	156.35	127.39			0.59477	0.60729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59477	0.60729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	163360000	105790000	57572000	0	0	0	0	0	0	163360000	105790000	57572000	0	0	0	41045	1004	38632	251260	336999	336999			1	
QGFISSLK	1	Unmodified	878.48617	0.48616764	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	40.06	39.526	2	0.0064486	33523	160511_QHF_FH_JSI12i_3	62.546	36.652			1.2516	1.3017	41.544	5	1	Median	1.5941	1.3533	NaN	1	0	Median	0.48571	0.59368	NaN	1	1	Median	1.5499	1.5166	21.619	2	0	Median	0.96159	0.96846	NaN	1	0	Median	374220000	198680000	175550000	29675000	10917000	18759000	44734000	29145000	15589000	126980000	56855000	70126000	172830000	101760000	71073000	41046	5755	38633	251261;251262;251263;251264;251265	337000;337001;337002	337002			3	
QGFNVVVESGAGEASK	1	Unmodified	1577.7686	0.76855009	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.837	47.335	2	2.8223E-05	43033	160511_QHF_FH_JSI12i_1	112.44	94.964			0.31246	0.35629	81.839	3	3	Median	NaN	NaN	NaN	0	0	Median	0.31246	0.35629	NaN	1	1	Median	0.14606	0.14106	NaN	1	1	Median	0.70448	0.72121	NaN	1	1	Median	92320000	69250000	23069000	0	0	0	25521000	18883000	6637200	33562000	30903000	2659100	33237000	19464000	13773000	41047	2405	38634	251266;251267;251268;251269	337003;337004;337005;337006	337004			4	
QGFPIIFHGVMGK	1	Unmodified	1429.754	0.75402642	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	79.428	74.909	3	4.439E-18	39135	160513_QHF_FH_JSI11Kac_6	146.07	133.51			1.0533	1.0337	35.276	8	1	Median	1.8607	1.5729	15.647	2	0	Median	0.91682	1.0747	19.036	2	1	Median	1.0886	1.0337	7.7176	2	0	Median	0.64186	0.66692	25.509	2	0	Median	489750000	256150000	233600000	98598000	35722000	62876000	84494000	42403000	42091000	168320000	81150000	87169000	138340000	96874000	41467000	41048	4856	38635	251270;251271;251272;251273;251274;251275;251276;251277;251278	337007;337008;337009;337010;337011;337012;337013;337014;337015;337016	337010			8	
QGFYVALR	0	Unmodified	952.51305	0.51305109	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	60.996	51.653	2	0.0014235	28053	160513_QHF_FH_JSI11Kac_6	99.375	72.254			0.8095	0.98789	56.055	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8095	0.98789	NaN	1	0	Median	0.92327	0.87064	NaN	1	0	Median	0.32733	0.35343	NaN	1	0	Median	43687000	22972000	20715000	0	0	0	26923000	13845000	13078000	10354000	4202000	6151900	6410200	4925800	1484500	41049	5230	38636	251279;251280;251281	337017;337018;337019	337018			3	
QGGAPDAGQE	0	Unmodified	928.38864	0.38863844	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	2	1	8.0225	6.2433	2	0.0032586	2584	160513_QHF_FH_JSI11Kac_1	69.825	65.688			1.1061	1.1001	17.324	5	0	Median	1.473	1.2271	NaN	1	0	Median	0.94352	1.1001	NaN	1	0	Median	1.1598	1.1346	8.2181	2	0	Median	0.76575	0.79678	NaN	1	0	Median	700780000	339950000	360830000	95455000	40326000	55129000	244610000	121250000	123370000	211180000	93410000	117770000	149530000	84968000	64563000	41050	1655	38637	251282;251283;251284;251285;251286	337020;337021;337022;337023	337023			4	
QGGDLGWMTR	0	Unmodified	1119.5131	0.51312744	5489	Q9Y237	PIN4	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.686	44.71	2	0.0026513	38351	160511_QHF_FH_JSI11i_2	58.592	31.338			1.0701	1.1869	18.237	4	0	Median	1.6038	1.382	NaN	1	0	Median	1.0483	1.2811	NaN	1	0	Median	1.0924	1.0995	NaN	1	0	Median	0.84762	0.91465	NaN	1	0	Median	237240000	110270000	126970000	43322000	20327000	22995000	62282000	29911000	32371000	88787000	38916000	49871000	42848000	21115000	21733000	41051	5489	38638	251287;251288;251289;251290	337024	337024			1	
QGGDVLQNEEGETTSHLMGMFYR	0	Oxidation (M)	2614.1428	0.14280079	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	73.235	72.963	3	3.6264E-09	64444	160511_QHF_FH_JSI11i_3	85.248	82.195			0.75845	0.87395	21.479	5	1	Median	NaN	NaN	NaN	0	0	Median	0.70523	0.87395	NaN	1	1	Median	1.1954	1.1401	9.0663	2	0	Median	0.74376	0.76176	10.224	2	0	Median	235190000	119970000	115220000	0	0	0	21690000	14125000	7565200	98695000	36334000	62361000	114800000	69507000	45293000	41052	1488	38639	251291;251292;251293;251294;251295	337025;337026;337027;337028;337029;337030;337031;337032	337025		1169;1170	8	
QGGDVLQNEEGETTSHLMGMFYR	0	Unmodified	2598.1479	0.14788616	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	3	2	85.594	82.673	3	1.1426E-89	40987	160513_QHF_FH_JSI11Kac_6	219.23	212.5			1.0834	1.12	22.101	9	3	Median	1.7211	1.4888	9.5609	2	1	Median	0.93998	1.1421	5.948	2	1	Median	1.1674	1.12	1.499	3	0	Median	0.74947	0.80688	1.2371	2	1	Median	2785500000	1312600000	1472900000	432140000	144530000	287610000	630290000	309980000	320310000	1151100000	547990000	603070000	571980000	310060000	261930000	41053	1488	38639	251296;251297;251298;251299;251300;251301;251302;251303;251304	337033;337034;337035;337036;337037;337038;337039;337040;337041;337042;337043;337044;337045;337046;337047;337048	337038			16	
QGGESETFAK	1	Unmodified	1052.4775	0.47745344	2423	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	12.083	11.527	2	2.6868E-07	9448	160511_QHF_FH_JSI12i_1	113.62	96.236			0.91635	0.76183	10.346	4	2	Median	0.93301	0.76183	7.7385	2	2	Median	NaN	NaN	NaN	0	0	Median	0.95283	0.88568	NaN	1	0	Median	0.68945	0.70971	NaN	1	0	Median	259220000	129680000	129540000	138010000	61919000	76088000	0	0	0	69094000	36237000	32857000	52120000	31529000	20592000	41054	2423	38640	251305;251306;251307;251308	337049;337050;337051;337052	337050			4	
QGGGGGGGSVPGIER	0	Unmodified	1283.6218	0.62182627	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.22	5					2	2			1	3	3	2	24.503	20.636	2	1.1616E-32	12969	160513_QHF_FH_JSI11Kac_4	168.61	156.08			0.94717	1.0264	11.133	9	3	Median	1.399	1.1451	NaN	1	0	Median	0.90841	1.0722	6.0377	3	2	Median	1.0543	1.0264	6.3536	3	0	Median	0.78221	0.84982	3.4473	2	1	Median	3224300000	1633900000	1590300000	698880000	276990000	421890000	1026100000	561970000	464160000	746390000	368370000	378010000	752890000	426600000	326290000	41055	1765	38641	251309;251310;251311;251312;251313;251314;251315;251316;251317	337053;337054;337055;337056;337057;337058;337059;337060;337061;337062;337063;337064;337065;337066;337067	337061			15	
QGGITSDQAAVISK	1	Unmodified	1373.7151	0.71505795	3552	Q8N668	COMMD1	COMM domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		33.814	33.201	2	0.0061716	29602	160511_QHF_FH_JSI10i_1	67.118	53.765			1.2173	1.1589	15.131	3	0	Median	1.4648	1.1784	NaN	1	0	Median	0.75597	0.89956	NaN	1	0	Median	1.2173	1.1589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123400000	63085000	60311000	41731000	23641000	18091000	43583000	19973000	23610000	38081000	19471000	18610000	0	0	0	41056	3552	38642	251318;251319;251320	337068;337069;337070;337071;337072	337070			5	
QGGLGPIR	0	Unmodified	796.45554	0.45553621	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	22.973	21.877	2	0.0081074	18128	160511_QHF_FH_JSI12i_2	57.471	4.7783			0.95273	0.94139	36.818	2	0	Median	1.4056	1.2213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64579	0.72561	NaN	1	0	Median	249900000	121070000	128830000	134040000	54970000	79073000	0	0	0	0	0	0	115850000	66099000	49753000	41057	2364	38643	251321;251322	337073;337074;337075	337073			3	
QGGLGPMNIPLVSDPK	1	Oxidation (M)	1637.8447	0.84469192	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.78	8					3	1			2	3	2	5	69.511	66.132	2	8.4472E-06	59738	160511_QHF_FH_JSI11i_1	124.12	91.061			0.72401	0.74396	22.496	12	2	Median	0.99352	0.81985	17.376	2	0	Median	0.77698	0.9067	11.366	3	0	Plateau	0.82208	0.7984	14.562	2	0	Median	0.63056	0.68757	19.228	5	2	Median	1008900000	572470000	436410000	200380000	88571000	111810000	282000000	153590000	128410000	268660000	151750000	116910000	257840000	178560000	79279000	41058	2249	38644	251323;251324;251325;251326;251327;251328;251329;251330;251331;251332;251333;251334	337076;337077;337078;337079;337080;337081;337082;337083;337084;337085;337086;337087;337088;337089	337077		1862	14	
QGGLGPMNIPLVSDPK	1	Unmodified	1621.8498	0.84977729	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	2.62	12	8	2				1			5	6	6	6	81.485	80.38	2;3	1.1205E-21	71813	160511_QHF_FH_JSI9i_1	174.68	149.29			0.93924	0.99529	30.273	22	5	Median	1.2003	1.0124	5.5082	5	0	Median	0.91368	1.0605	4.4911	6	0	Median	1.0118	0.9862	9.1294	6	3	Median	0.62914	0.64993	34.913	5	2	Plateau	17641000000	8758000000	8882600000	3335000000	1362700000	1972300000	3543400000	1800500000	1742900000	7644200000	3666200000	3978000000	3118000000	1928600000	1189400000	41059	2249	38644	251335;251336;251337;251338;251339;251340;251341;251342;251343;251344;251345;251346;251347;251348;251349;251350;251351;251352;251353;251354;251355;251356;251357	337090;337091;337092;337093;337094;337095;337096;337097;337098;337099;337100;337101;337102;337103;337104;337105;337106;337107;337108;337109;337110;337111;337112;337113;337114;337115;337116;337117;337118;337119;337120;337121;337122;337123;337124;337125;337126;337127;337128;337129;337130;337131;337132;337133;337134;337135;337136;337137;337138;337139;337140;337141;337142;337143;337144;337145;337146;337147;337148;337149;337150;337151;337152;337153;337154;337155;337156	337137			67	
QGGLGPMNIPLVSDPKR	1	Unmodified	1777.9509	0.95088832	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.662	2	7	4							3	5	3	2	71.237	70.268	2;3	1.7311E-22	57612	160511_QHF_FH_JSI9i_3	136.34	123.55			0.76454	0.80227	54.81	13	2	Median	2.3943	2.0237	17.09	3	0	Median	0.45799	0.53759	22.634	5	2	Median	0.76454	0.77451	17.643	3	0	Median	1.1806	1.2514	7.7695	2	0	Median	2230000000	1084900000	1145100000	849110000	214190000	634920000	893780000	633620000	260160000	377860000	191760000	186090000	109260000	45367000	63892000	41060	2249	38645	251358;251359;251360;251361;251362;251363;251364;251365;251366;251367;251368;251369;251370	337157;337158;337159;337160;337161;337162;337163;337164;337165;337166;337167;337168;337169;337170;337171;337172;337173;337174;337175;337176;337177;337178;337179;337180;337181;337182;337183	337169			27	
QGGLGPMNIPLVSDPKR	1	Oxidation (M)	1793.9458	0.94580295	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	1	1	By MS/MS				15	0								1		1				67.834	57.175	3	0.0072868	29836	160513_QHF_FH_JSI9Kac_5	54.501	43.713			0.36952	0.31545	NaN	1	1	Median	0.36952	0.31545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4913500	3041800	1871700	4913500	3041800	1871700	0	0	0	0	0	0	0	0	0	41061	2249	38645	251371	337184	337184		1862	1	
QGGLLVNFHPSILTCLLPQLTSPR	0	Unmodified	2660.4472	0.44722671	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.01	87.604	3	9.8338E-78	49918	160513_QHF_FH_JSI11Kac_6	203.33	175.84			0.8383	0.7937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8383	0.7937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	226770000	109780000	116980000	0	0	0	0	0	0	226770000	109780000	116980000	0	0	0	41062	3343	38646	251372	337185	337185			1	
QGGLNLSPLK	1	Unmodified	1025.5869	0.58694431	4353	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		49.832	49.158	2	0.011795	44434	160511_QHF_FH_JSI11i_1	46.001	35.128			0.96377	1.0403	8.8137	5	0	Median	1.3258	1.1403	NaN	1	0	Median	0.90194	1.0704	4.0343	2	0	Median	0.97001	0.94364	2.8236	2	0	Median	NaN	NaN	NaN	0	0	Median	177400000	82948000	94448000	30025000	10837000	19187000	68011000	33669000	34343000	79360000	38442000	40918000	0	0	0	41063	4353	38647	251373;251374;251375;251376;251377	337186;337187	337186			2	
QGGPTYYIDTNALR	0	Unmodified	1567.7631	0.76307078	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.01	59.365	2	7.6251E-05	53907	160511_QHF_FH_JSI11i_1	115.37	96.416			0.96288	1.0522	24.964	4	0	Median	1.5201	1.2669	NaN	1	0	Median	0.81413	0.98225	NaN	1	0	Median	1.1388	1.1272	NaN	1	0	Median	0.69608	0.71101	NaN	1	0	Median	856160000	425860000	430300000	212340000	92219000	120120000	269950000	142270000	127680000	198940000	85415000	113520000	174920000	105950000	68974000	41064	758	38648	251378;251379;251380;251381	337188;337189;337190;337191;337192;337193;337194;337195	337189			8	
QGGSPDEPDSK	1	Unmodified	1115.4731	0.47309635	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.33	5.19	1				2						1	1	1	6.4999	-0.72169	2	7.5567E-09	3527	160511_QHF_FH_JSI10i_1	119.34	84.04			0.68561	0.71114	22.853	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8736	0.83586	NaN	1	0	Median	0.53807	0.60503	NaN	1	0	Median	3324000	2038500	1285500	0	0	0	0	0	0	2150400	1221800	928550	1173600	816670	356920	41065	5415	38649	251382;251383;251384	337196;337197	337197			2	
QGHDQKAAAK	2	Acetyl (K)	1094.5469	0.54687041	5683	Q9Y5V0	ZNF706	Zinc finger protein 706	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	0.786						4	6	8		3	5	5	5	4.9076	-4.2555	2;3	5.7277E-12	1400	160513_QHF_FH_JSI10Kac_4	154.84	107.27			0.77428	0.86246	27.506	16	0	Median	2.8124	2.2865	NaN	1	0	Median	0.73312	0.87406	11.974	5	0	Median	0.83418	0.82075	19.782	5	0	Median	0.76842	0.83673	9.56	5	0	Median	833710000	441470000	392240000	29757000	3893800	25863000	262080000	133120000	128960000	334800000	185030000	149770000	207080000	119420000	87655000	41066	5683	38650	251385;251386;251387;251388;251389;251390;251391;251392;251393;251394;251395;251396;251397;251398;251399;251400;251401;251402	337198;337199;337200;337201;337202;337203;337204;337205;337206;337207;337208;337209;337210;337211;337212;337213;337214;337215	337201	3525		18	
QGHIVAISSIQGK	1	Unmodified	1336.7463	0.7462985	3052	Q6IAN0	DHRS7B	Dehydrogenase/reductase SDR family member 7B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	2	5	1	2	38.392	33.515	2;3	1.4048E-09	28049	160511_QHF_FH_JSI12i_3	135.99	117.67			0.67065	0.78824	25.266	8	2	Median	1.4036	1.1566	NaN	1	0	Median	0.67065	0.78824	14.994	4	2	Median	1.0265	0.99605	NaN	1	0	Median	0.58571	0.58757	3.9347	2	0	Median	311780000	187160000	124620000	16326000	5643400	10683000	91747000	50539000	41208000	14507000	6917900	7589100	189200000	124060000	65143000	41067	3052	38651	251403;251404;251405;251406;251407;251408;251409;251410;251411;251412	337216;337217;337218;337219;337220;337221;337222;337223;337224;337225;337226;337227;337228;337229	337225			12	
QGHIYMEMNFTNK	1	Oxidation (M)	1627.7123	0.71229754	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	44.096	34.979	3	0.0010927	18740	160513_QHF_FH_JSI10Kac_6	67.019	62.471			0.70197	0.7593	41.818	3	1	Median	1.6521	1.441	NaN	1	0	Median	0.54895	0.65664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70197	0.7593	NaN	1	0	Median	14170000	8504600	5665700	3869000	1654200	2214800	6523500	4786900	1736600	0	0	0	3777700	2063500	1714300	41068	2046	38652	251413;251414;251415	337230;337231;337232;337233	337233		1713;1714	4	
QGHIYMEMNFTNK	1	Unmodified	1611.7174	0.71738291	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	58.527	49.217	3	1.6455E-08	26964	160513_QHF_FH_JSI10Kac_6	106.17	86.335			1.0377	1.0472	15.51	4	0	Median	1.2827	1.1107	NaN	1	0	Median	0.83943	0.98731	NaN	1	0	Median	1.292	1.2668	NaN	1	0	Median	0.80263	0.88298	NaN	1	0	Median	135040000	69450000	65591000	47445000	22451000	24994000	49105000	29818000	19287000	23937000	10115000	13822000	14554000	7066000	7488200	41069	2046	38652	251416;251417;251418;251419	337234;337235;337236;337237	337236			4	
QGHSIVVSSLK	1	Unmodified	1153.6455	0.64552182	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		24.286	24.286	3	0.055166	20648	160511_QHF_FH_JSI11i_3	23.711	13.479			0.68105	0.61988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68105	0.61988	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32301000	18023000	14278000	0	0	0	0	0	0	32301000	18023000	14278000	0	0	0	41070	303	38653	251420	337238	337238			1	
QGIEMHLFR	0	Unmodified	1129.5702	0.57024839	2407	Q13425	SNTB2	Beta-2-syntrophin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.037	51.919	3	0.00016615	45942	160511_QHF_FH_JSI11i_3	81.972	66.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41071	2407	38654	251421;251422	337239;337240	337239			2	
QGIETPEDQNDLRK	1	Unmodified	1641.7958	0.79582747	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.419	25.848	2	1.2676E-09	22604	160511_QHF_FH_JSI11i_1	143.79	125.52			1.0027	1.0569	27.693	4	0	Median	1.5086	1.2778	NaN	1	0	Median	0.75093	0.87428	NaN	1	0	Median	1.3388	1.2811	NaN	1	0	Median	0.69503	0.73917	NaN	1	0	Median	170600000	87132000	83467000	29709000	10954000	18755000	50446000	26975000	23471000	47482000	24257000	23225000	42961000	24946000	18015000	41072	2689	38655	251423;251424;251425;251426	337241;337242;337243;337244;337245;337246;337247;337248;337249	337241			9	
QGIEYILSNQGYVR	0	Unmodified	1638.8366	0.83657007	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.365	69.569	3	0.00027462	61808	160511_QHF_FH_JSI10i_2	50.843	39.897			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41073	2787	38656	251427	337250	337250			1	
QGIFGKYEK	2	Acetyl (K)	1110.571	0.5709599	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		56.758	45.912	2	0.0091481	25282	160513_QHF_FH_JSI11Kac_5	73.233	42.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3070400	3070400	0	0	0	0	0	0	0	3070400	3070400	0	0	0	0	41074	4848	38657	251428	337251	337251	3251		1	
QGIFPASYVQVSR	0	Unmodified	1450.7569	0.75686319	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	67.733	66.434	2	0.00070183	57175	160511_QHF_FH_JSI12i_2	83	56.327			1.1223	1.2163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1223	1.2163	NaN	1	1	Median	31251000	17595000	13656000	0	0	0	0	0	0	0	0	0	31251000	17595000	13656000	41075	422	38658	251429;251430	337252;337253	337252			2	
QGIIFKNSK	2	Acetyl (K)	1075.6026	0.60259438	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		50.926	40.263	2	0.0023523	22380	160513_QHF_FH_JSI11Kac_5	85.731	22.251			2.6919	2.6361	207.9	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6919	2.6361	207.9	2	1	Median	NaN	NaN	NaN	0	0	Median	7951100	3142800	4808200	0	0	0	0	0	0	7951100	3142800	4808200	0	0	0	41076	2277	38659	251431;251432	337254;337255	337255	2373		2	
QGILGAQPQLIFQPHR	0	Unmodified	1801.9951	0.9951364	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			75.294	73.851	2;3	7.9246E-05	61921	160511_QHF_FH_JSI10i_3	77.379	61.807			0.91785	0.92455	13.936	2	1	Median	1.1648	1.0203	NaN	1	1	Median	0.72326	0.83779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65616000	35375000	30241000	3989200	1310900	2678300	61627000	34064000	27563000	0	0	0	0	0	0	41077	3499	38660	251433;251434;251435	337256;337257;337258	337256			2	
QGILLDGDK	1	Unmodified	957.51311	0.51311067	4125	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.807	35.214	2	0.0099892	31860	160511_QHF_FH_JSI12i_1	50.473	25.841			0.96301	1.0266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96301	1.0266	NaN	1	0	Median	23284000	12529000	10755000	0	0	0	0	0	0	0	0	0	23284000	12529000	10755000	41078	4125	38661	251436	337259	337259			1	
QGIPNESWR	0	Unmodified	1085.5254	0.52540669	2452	Q13614	MTMR2	Myotubularin-related protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.052	33.641	2	0.018943	28726	160511_QHF_FH_JSI11i_2	51.113	23.859			0.88634	0.90997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88634	0.90997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21276000	9973700	11303000	0	0	0	0	0	0	21276000	9973700	11303000	0	0	0	41079	2452	38662	251437	337260	337260			1	
QGIVPPGLTENELWR	0	Unmodified	1707.8944	0.8944193	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	3	3	1	85.589	85.039	2	1.7028E-06	74971	160511_QHF_FH_JSI9i_2	131.43	119.9			0.85021	0.91882	22.167	8	4	Median	1.1764	0.98223	NaN	1	0	Median	0.60578	0.78897	15.313	3	2	Plateau	1.2596	1.2618	16.147	3	2	Plateau	0.60456	0.67322	NaN	1	0	Median	682510000	366450000	316070000	68071000	30135000	37936000	245510000	146750000	98752000	262510000	122220000	140300000	106420000	67341000	39083000	41080	4806	38663	251438;251439;251440;251441;251442;251443;251444;251445	337261;337262;337263;337264;337265;337266;337267;337268;337269;337270;337271;337272	337267			12	
QGIVTPIEAQTR	0	Unmodified	1311.7147	0.71466402	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.99	41.533	2	3.4056E-05	37808	160511_QHF_FH_JSI12i_1	105.46	42.177			0.62966	0.75492	27.659	3	0	Median	NaN	NaN	NaN	0	0	Median	0.62966	0.75492	NaN	1	0	Median	0.85423	0.8026	NaN	1	0	Median	0.46049	0.48353	NaN	1	0	Median	209140000	139090000	70049000	0	0	0	64471000	40921000	23549000	66874000	43397000	23477000	77795000	54773000	23022000	41081	2140	38664	251446;251447;251448	337273;337274;337275	337274			1	
QGLDNVHK	1	Unmodified	909.46683	0.46682918	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.7508	8.1265	2	0.0059841	5884	160511_QHF_FH_JSI12i_2	60.478	35.846			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41082	2258	38665	251449	337276	337276			1	
QGLDPASQTK	1	Unmodified	1043.5247	0.52473799	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	14.578	14.313	2	0.00017566	11778	160511_QHF_FH_JSI11i_1	82.645	57.086			1.2268	1.166	38.771	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1099	1.2966	NaN	1	0	Median	1.2268	1.166	NaN	1	0	Median	0.60126	0.63218	NaN	1	0	Median	130730000	64150000	66580000	0	0	0	40440000	17913000	22527000	51323000	23120000	28203000	38967000	23117000	15850000	41083	4625	38666	251450;251451;251452	337277;337278;337279;337280;337281	337277			5	
QGLETFKPDYSEQK	2	Unmodified	1668.7995	0.79951586	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	40.069	39.223	3	0.0001269	33611	160511_QHF_FH_JSI11i_2	81.632	72.348			0.83622	0.99582	21.29	5	0	Median	1.243	1.0694	NaN	1	0	Median	0.74398	0.90029	14.263	2	0	Median	1.1383	1.1465	NaN	1	0	Median	0.59759	0.68256	NaN	1	0	Median	269720000	138470000	131240000	44392000	16883000	27508000	83053000	41389000	41663000	88837000	46129000	42708000	53435000	34073000	19362000	41084	3264	38667	251453;251454;251455;251456;251457	337282;337283	337283			2	
QGLFPNNYVTK	1	Unmodified	1279.6561	0.65608651	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									2		1	55.57	54.679	2	0.00039333	46881	160511_QHF_FH_JSI12i_2	72.096	50.01			0.97123	1.156	13.42	3	2	Median	NaN	NaN	NaN	0	0	Median	0.99744	1.203	5.6381	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86807	0.96356	NaN	1	0	Median	362970000	168740000	194230000	0	0	0	237810000	106720000	131100000	0	0	0	125160000	62022000	63138000	41085	2332	38668	251458;251459;251460	337284;337285;337286	337284			3	
QGLGPSGTSGAR	0	Unmodified	1086.5418	0.54178503	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		11.121	10.991	2	0.00029405	8809	160511_QHF_FH_JSI10i_1	75.387	36.134			0.83813	0.81415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83813	0.81415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59282000	43908000	15375000	0	0	0	0	0	0	59282000	43908000	15375000	0	0	0	41086	5674	38669	251461;251462	337287;337288	337288			2	
QGLLHVGDIIK	1	Unmodified	1191.6976	0.69755739	5168	Q9NZW5	MPP6	MAGUK p55 subfamily member 6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	60.667	59.983	3	0.00014486	53133	160511_QHF_FH_JSI10i_2	69.721	60.066			0.91008	0.95626	23.984	5	0	Median	1.1587	0.98046	NaN	1	0	Median	0.71773	0.8446	NaN	1	0	Median	1.4163	1.313	NaN	1	0	Median	0.77434	0.80617	24.146	2	0	Median	100890000	47301000	53592000	9848400	4331300	5517100	16406000	9911900	6494100	35401000	13424000	21976000	39237000	19633000	19604000	41087	5168	38670	251463;251464;251465;251466;251467	337289;337290;337291;337292;337293	337292			5	
QGLLPLTFADPADYNK	1	Unmodified	1761.8938	0.8937506	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	95.479	95.256	2;3	3.989E-11	86552	160511_QHF_FH_JSI12i_1	154.28	126.8			0.80275	0.89817	29.615	4	1	Median	1.0798	0.86843	NaN	1	1	Median	0.80275	0.93213	0.4874	2	0	Median	NaN	NaN	NaN	0	0	Median	0.48355	0.50541	NaN	1	0	Median	268840000	155090000	113750000	19762000	8085400	11677000	158740000	87518000	71224000	0	0	0	90340000	59486000	30854000	41088	4315	38671	251468;251469;251470;251471;251472;251473	337294;337295;337296;337297;337298;337299;337300	337295			7	
QGLLPVLESLK	1	Unmodified	1195.7176	0.71762413	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	91.567	91.06	2	6.943E-05	80668	160511_QHF_FH_JSI10i_2	101.38	87.927		+	0.37304	0.4299	27.494	5	4	Median	0.49006	0.4299	NaN	1	1	Median	0.28012	0.3427	36.235	2	2	Median	0.55458	0.56623	NaN	1	0	Median	0.37304	0.41947	NaN	1	1	Median	728590000	545890000	182700000	126230000	94831000	31403000	308170000	241690000	66488000	183030000	130590000	52433000	111160000	78784000	32376000	41089	58	38672	251474;251475;251476;251477;251478	337301;337302;337303;337304;337305;337306;337307	337306			7	
QGLNGVPILSEEELSLLDEFYK	1	Unmodified	2492.2686	0.26863645	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.75	0.433	1	3									2	1	1	102.49	102.4	2;3	3.979E-70	90190	160511_QHF_FH_JSI11i_2	269.26	250.53			0.92344	1.0303	37.319	4	2	Median	NaN	NaN	NaN	0	0	Median	0.67803	0.81947	28.48	2	1	Median	1.0486	1.059	NaN	1	1	Median	1.5176	1.6674	NaN	1	0	Median	252050000	139830000	112220000	0	0	0	121820000	79523000	42301000	69908000	30815000	39092000	60322000	29496000	30826000	41090	2536	38673	251479;251480;251481;251482	337308;337309;337310	337309			3	
QGLQTTQAHLER	0	Unmodified	1380.711	0.71097563	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	18.572	18.252	2;3	6.4597E-06	15665	160511_QHF_FH_JSI10i_2	121.83	99.744			0.96808	1.0283	21.204	6	2	Median	1.2901	1.1312	NaN	1	0	Median	0.85599	1.0154	NaN	1	0	Median	1.1385	1.1005	7.8059	2	1	Median	0.70678	0.73304	7.8374	2	1	Median	222730000	131830000	90901000	17611000	8468000	9142700	15583000	7689000	7893600	92217000	53739000	38477000	97323000	61936000	35387000	41091	2591	38674	251483;251484;251485;251486;251487;251488	337311;337312;337313;337314;337315;337316	337315			6	
QGLSSSIFTK	1	Unmodified	1066.5659	0.56587452	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	3.85	1	4	4					1		3	2	3	2	48.766	46.926	2	0.000108	41217	160511_QHF_FH_JSI11i_3	99.688	50.27			1.0479	1.0304	26.275	10	6	Median	1.3516	1.1518	16.28	3	0	Median	0.88175	1.0691	8.2239	2	1	Median	1.2216	1.2413	31.647	3	3	Plateau	0.72169	0.76683	37.942	2	2	Median	1556700000	780140000	776550000	253820000	116890000	136930000	265770000	136560000	129210000	590310000	278440000	311870000	446790000	248260000	198530000	41092	1659	38675	251489;251490;251491;251492;251493;251494;251495;251496;251497;251498	337317;337318;337319;337320;337321;337322;337323;337324;337325;337326	337317			10	
QGLSSSIFTKDLGR	1	Acetyl (K)	1549.81	0.81002097	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		79.082	68.584	2	0.00064365	36394	160513_QHF_FH_JSI11Kac_5	86.772	53.394			0.66406	0.68252	59.589	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96492	1.0402	NaN	1	0	Median	0.457	0.44784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11527000	7590600	3936400	0	0	0	989740	385870	603860	10537000	7204800	3332500	0	0	0	41093	1659	38676	251499;251500	337327;337328	337327	1683		2	
QGLYELSASNFELHVAQGDHFIK	1	Unmodified	2602.2816	0.28160117	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	84.748	84.563	3;4	4.018E-31	73276	160511_QHF_FH_JSI12i_3	181.69	177.53			1.2698	1.2102	21.837	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2827	1.2666	3.5936	3	1	Median	0.82471	0.84728	2.393	2	0	Median	673970000	314960000	359010000	0	0	0	0	0	0	305740000	125730000	180010000	368230000	189230000	179000000	41094	3603	38677	251501;251502;251503;251504;251505	337329;337330;337331;337332;337333;337334;337335;337336;337337;337338;337339	337336			11	
QGMDLSANQDEETDQETFQLEIDRDTK	1	Unmodified	3155.3837	0.38369558	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	70.878	70.483	3	2.4945E-17	63759	160511_QHF_FH_JSI10i_1	101.59	96.464			0.86862	1.0229	30.28	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86862	1.0229	NaN	1	0	Median	1.2285	1.1704	NaN	1	0	Median	0.63544	0.65617	NaN	1	0	Median	212830000	110780000	102050000	0	0	0	89842000	41558000	48284000	48930000	22482000	26448000	74062000	46745000	27317000	41095	2751	38678	251506;251507;251508	337340;337341;337342;337343;337344;337345;337346;337347;337348	337348			9	
QGMDLSANQDEETDQETFQLEIDRDTKK	2	Unmodified	3283.4787	0.47865859	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	65.761	65.127	4	3.6901E-19	59404	160511_QHF_FH_JSI12i_1	112.86	110.62			1.215	1.4859	42.682	3	1	Median	NaN	NaN	NaN	0	0	Median	1.215	1.4859	NaN	1	0	Median	1.9494	1.8679	NaN	1	1	Median	0.76099	0.81726	NaN	1	0	Median	110150000	45698000	64452000	0	0	0	44604000	19702000	24902000	25629000	7860900	17768000	39917000	18136000	21781000	41096	2751	38679	251509;251510;251511	337349;337350;337351;337352;337353	337351			5	
QGNLFDFLR	0	Unmodified	1108.5665	0.56654322	4778	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		87.907	87.365	2	0.010906	76844	160511_QHF_FH_JSI11i_2	49.418	40.555			0.87888	0.96496	5.5573	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75358	0.92778	NaN	1	0	Median	1.025	1.0036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20377000	9663900	10713000	0	0	0	9340700	4622400	4718400	11036000	5041600	5994300	0	0	0	41097	4778	38680	251512;251513	337354;337355	337354			2	
QGNLSSQVPLK	1	Unmodified	1169.6404	0.64043645	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.59	5	4				2	2			3	4	3	3	37.698	34.013	2	1.4402E-29	30271	160511_QHF_FH_JSI11i_1	187.97	163.08			0.87055	0.99006	29.327	12	3	Median	1.172	1.0032	54.578	3	2	Median	0.85001	0.99892	3.5463	4	0	Median	1.005	0.98516	11.009	3	0	Median	0.71078	0.76464	6.2669	2	1	Median	2363800000	1051500000	1312300000	746630000	286380000	460260000	596380000	282840000	313550000	569610000	210500000	359100000	451130000	271780000	179350000	41098	2094	38681	251514;251515;251516;251517;251518;251519;251520;251521;251522;251523;251524;251525;251526	337356;337357;337358;337359;337360;337361;337362;337363;337364;337365;337366;337367;337368;337369;337370;337371;337372	337357			17	
QGNMTAALQAALK	1	Unmodified	1315.6918	0.69182009	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2								2	3	2	63.799	63.259	2	3.8559E-15	55072	160511_QHF_FH_JSI11i_2	151.66	139.82			0.87009	1.001	17.356	7	2	Median	NaN	NaN	NaN	0	0	Median	0.83898	1.0133	1.7162	2	1	Median	1.0684	1.0239	9.1525	3	1	Median	0.75234	0.79415	28.555	2	0	Median	480180000	261650000	218530000	0	0	0	115680000	64749000	50931000	222700000	113220000	109480000	141800000	83679000	58126000	41099	296	38682	251527;251528;251529;251530;251531;251532;251533	337373;337374;337375;337376;337377	337377			2	
QGNPVAPIK	1	Unmodified	922.52362	0.52361577	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	24.245	20.584	2	4.0133E-05	17407	160511_QHF_FH_JSI11i_1	98.997	88.582			0.80794	0.92366	22.015	7	0	Median	1.2958	1.0366	NaN	1	0	Median	0.77254	0.92141	7.8213	2	0	Median	1.0162	0.98943	9.727	2	0	Median	0.59725	0.63936	12.558	2	0	Median	1074600000	551270000	523330000	245300000	100010000	145290000	272660000	167880000	104780000	347250000	158190000	189060000	209380000	125190000	84195000	41100	2294	38683	251534;251535;251536;251537;251538;251539;251540	337378;337379;337380;337381;337382;337383;337384;337385;337386;337387	337379			10	
QGNVLVISHQAVMR	0	Unmodified	1550.8351	0.83513028	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	3	2	1	1	50.477	43.907	2;3	0.0001209	23249	160513_QHF_FH_JSI9Kac_6	82.651	65.37			1.3117	1.288	55.126	6	4	Median	2.3102	1.8815	30.457	3	2	Median	0.72213	0.82592	75.431	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78981	0.79717	NaN	1	1	Median	145040000	71587000	73456000	42679000	11608000	31071000	47213000	26552000	20661000	0	0	0	55150000	33427000	21724000	41101	449	38684	251541;251542;251543;251544;251545;251546;251547	337388;337389;337390;337391;337392;337393;337394	337391			6	
QGNVLVISHQAVMR	0	Oxidation (M)	1566.83	0.83004491	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	44.271	34.94	3	0.0013537	18670	160513_QHF_FH_JSI9Kac_6	64.798	59.328			0.90389	0.85726	32.619	2	2	Median	1.262	1.0797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64742	0.68068	NaN	1	1	Median	27219000	13691000	13528000	19960000	9807600	10152000	0	0	0	0	0	0	7259500	3883100	3376300	41102	449	38684	251548;251549	337395;337396	337395		179	2	
QGPAETGGQGQPQGPGLR	0	Unmodified	1733.8445	0.844509	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.367	22.824	2	4.1072E-07	20057	160511_QHF_FH_JSI12i_1	143.42	135.7			0.8585	0.88401	19.017	4	2	Median	1.4762	1.187	NaN	1	1	Median	0.71863	0.83276	NaN	1	1	Median	0.80027	0.76661	NaN	1	0	Median	0.92096	0.93842	NaN	1	0	Median	90971000	45770000	45201000	20043000	7662600	12381000	14393000	8350000	6042600	29638000	13923000	15715000	26897000	15834000	11063000	41103	382	38685	251550;251551;251552;251553	337397;337398;337399;337400;337401;337402	337399			6	
QGPEESGLGDGTGPK	1	Unmodified	1427.6529	0.65285163	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	20.99	20.473	2	0.0014054	17348	160511_QHF_FH_JSI9i_1	61.11	33.996			0.86621	0.85114	27.982	4	3	Median	0.86814	0.73769	NaN	1	0	Median	0.86429	0.98204	NaN	1	1	Median	1.2222	1.1559	NaN	1	1	Median	0.61707	0.62008	NaN	1	1	Median	104520000	54387000	50133000	31336000	16418000	14918000	25103000	13186000	11917000	23148000	9581600	13566000	24934000	15202000	9731400	41104	3858	38686	251554;251555;251556;251557;251558	337403;337404;337405;337406;337407;337408	337407			6	
QGPGPGGPK	1	Unmodified	793.40825	0.40825167	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.78	4	2	1			2	2			1	3	3	4	6.3531	3.4065	2	0.00046326	3600	160511_QHF_FH_JSI10i_1	80.229	37.163			1.0136	1.1451	30.631	11	1	Median	1.4081	1.1502	NaN	1	0	Median	1.0136	1.1706	6.394	3	0	Median	1.265	1.2296	13.532	3	1	Median	0.67625	0.73499	26.142	4	0	Median	4285900000	2151800000	2134000000	689650000	288010000	401650000	1230200000	600110000	630060000	1258700000	666290000	592440000	1107300000	597420000	509890000	41105	1222	38687	251559;251560;251561;251562;251563;251564;251565;251566;251567;251568;251569	337409;337410;337411;337412;337413;337414;337415;337416;337417;337418;337419;337420;337421	337416			13	
QGPVSQSATQQPVTADK	1	Unmodified	1740.8642	0.86424139	4412	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	23.505	22.634	2	6.5219E-22	19968	160511_QHF_FH_JSI12i_1	171.76	151.56			0.83446	0.76139	7.4551	2	1	Median	0.98262	0.8026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70865	0.72229	NaN	1	0	Median	50307000	25994000	24313000	17886000	8062800	9823400	0	0	0	0	0	0	32421000	17931000	14490000	41106	4412	38688	251570;251571	337422;337423;337424	337423			3	
QGQDNLSSVK	1	Unmodified	1074.5306	0.53055165	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	5.56	4	1	1		3	4				3	3	4	3	15.103	10.198	2	7.6573E-20	9375	160511_QHF_FH_JSI9i_1	182.39	141.51			0.97065	0.96092	19.207	13	1	Median	1.4569	1.1547	13.942	3	1	Plateau	0.90603	1.0456	6.9854	3	0	Median	1.0167	1.0008	11.478	4	0	Median	0.58629	0.62317	12.427	3	0	Plateau	4650500000	2227900000	2422500000	1112800000	434190000	678560000	1195800000	671560000	524240000	1214400000	529590000	684830000	1127500000	592600000	534880000	41107	1332	38689	251572;251573;251574;251575;251576;251577;251578;251579;251580;251581;251582;251583;251584	337425;337426;337427;337428;337429;337430;337431;337432;337433;337434;337435;337436;337437;337438;337439;337440;337441	337436			17	
QGQELSAAR	0	Unmodified	958.48321	0.48320752	2215	Q04323	UBXN1	UBX domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		8.8411	8.4377	2	0.010648	5982	160511_QHF_FH_JSI9i_1	49.715	27.093			1.3764	1.2218	6.9842	2	1	Median	1.6081	1.2837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1781	1.163	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	475630000	198350000	277280000	248500000	95541000	152960000	0	0	0	227120000	102810000	124320000	0	0	0	41108	2215	38690	251585;251586	337442;337443	337443			2	
QGQETAVAPSLVAPALNK	1	Unmodified	1792.9683	0.96831253	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	64.556	63.935	2;3	5.7188E-66	58358	160511_QHF_FH_JSI12i_1	225.79	203.11			0.90321	0.97824	19.238	8	2	Median	1.3513	1.1183	3.9985	2	1	Median	0.7904	0.93671	2.7932	2	0	Median	1.1075	1.0824	10.962	2	1	Median	0.70912	0.72424	9.9117	2	0	Median	744380000	381420000	362960000	194750000	76469000	118280000	178160000	97297000	80858000	199390000	98189000	101200000	172090000	109470000	62623000	41109	2698	38691	251587;251588;251589;251590;251591;251592;251593;251594	337444;337445;337446;337447;337448;337449;337450;337451;337452;337453;337454;337455;337456	337448			13	
QGQETAVAPSLVAPALNKPK	2	Unmodified	2018.116	0.1160394	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							3	3	3	2	56.935	56.184	3	3.7397E-11	49298	160511_QHF_FH_JSI9i_2	130.02	127.4			0.99461	1.0243	15.007	10	1	Median	1.277	1.078	17.502	3	1	Plateau	0.9191	1.0844	0.73625	2	0	Median	0.99668	1.0009	2.1609	3	0	Median	0.79703	0.84635	6.2554	2	0	Median	2184700000	1110100000	1074600000	368350000	161340000	207010000	578680000	314300000	264380000	767810000	374240000	393570000	469870000	260240000	209630000	41110	2698	38692	251595;251596;251597;251598;251599;251600;251601;251602;251603;251604;251605	337457;337458;337459;337460;337461;337462;337463;337464;337465;337466;337467;337468;337469;337470;337471;337472;337473;337474;337475;337476;337477	337470			21	
QGQETAVAPSLVAPALNKPK	2	Acetyl (K)	2060.1266	0.12660408	2698	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	77.461	69.228	3	0.00038727	30004	160513_QHF_FH_JSI12Kac_2	61.684	56.024			0.93863	0.9955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93863	0.9955	NaN	1	0	Median	19216000	10357000	8859900	0	0	0	0	0	0	0	0	0	19216000	10357000	8859900	41111	2698	38692	251606	337478	337478	2640		1	
QGQGQLVTCSGAFK	1	Unmodified	1479.714	0.71401209	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	3	1	1	37.458	36.652	2	1.3371E-17	32622	160511_QHF_FH_JSI10i_1	140.63	120.97			1.0355	1.1817	123.96	5	3	Median	0.35408	0.29066	198.35	2	1	Median	1.0868	1.2745	8.8723	2	1	Median	0.72199	0.71017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	478390000	291450000	186940000	189410000	148570000	40842000	114150000	55506000	58643000	174820000	87371000	87454000	0	0	0	41112	2734	38693	251607;251608;251609;251610;251611;251612;251613	337479;337480;337481;337482;337483;337484;337485;337486;337487;337488	337483			10	
QGQGQSEPGEYEQR	0	Unmodified	1591.6863	0.68627702	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.922	10.538	2	1.217E-116	8137	160511_QHF_FH_JSI11i_1	270.67	263.03			0.89144	0.95177	19.293	4	0	Median	1.4495	1.2009	NaN	1	0	Median	0.78794	0.92445	NaN	1	0	Median	1.0085	0.97989	NaN	1	0	Median	0.7301	0.75135	NaN	1	0	Median	363370000	188030000	175350000	88497000	36062000	52435000	88197000	49091000	39106000	87854000	41686000	46168000	98826000	61186000	37639000	41113	1554	38694	251614;251615;251616;251617	337489;337490;337491;337492;337493;337494	337489			6	
QGQHWLEKK	2	Acetyl (K)	1194.6146	0.61455605	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		34.248	24.881	2	0.055351	14011	160513_QHF_FH_JSI11Kac_6	56.563	43.936			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41114	2067	38695	251618	337495	337495			1	
QGQIINPSEDPHLPK	1	Unmodified	1671.858	0.8580338	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	44.821	43.996	3	3.1638E-05	39668	160511_QHF_FH_JSI10i_1	96.673	87.637			1.0945	1.1423	25.972	7	2	Median	1.5365	1.2851	48.268	2	2	Median	0.95175	1.1438	16.079	2	0	Median	1.2306	1.1935	6.1933	2	0	Median	0.73642	0.81931	NaN	1	0	Median	525800000	263220000	262580000	99738000	31938000	67800000	165350000	93038000	72310000	171330000	85353000	85981000	89382000	52893000	36489000	41115	1020	38696	251619;251620;251621;251622;251623;251624;251625	337496;337497;337498;337499;337500;337501;337502;337503;337504	337499			9	
QGQMDAVR	0	Unmodified	903.42325	0.4232498	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	9.1531	8.9739	2	0.0071546	6774	160511_QHF_FH_JSI10i_1	58.815	38.19			0.52097	0.55238	1.5249	2	2	Median	NaN	NaN	NaN	0	0	Median	0.4673	0.54645	NaN	1	1	Median	0.5808	0.55837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	679460000	388450000	291000000	0	0	0	348330000	210110000	138210000	331130000	178340000	152790000	0	0	0	41116	348	38697	251626;251627;251628;251629	337505;337506;337507;337508	337508			4	
QGQQQAGGKK	2	Acetyl (K)	1070.5469	0.54687041	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						3						2	1	4.6796	-2.5923	2	0.0030479	1432	160513_QHF_FH_JSI11Kac_3	82.452	69.416			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7574100	5836500	1737600	0	0	0	0	0	0	3613800	1876200	1737600	3960300	3960300	0	41117	2161	38698	251630;251631;251632	337509;337510;337511	337510	2278		3	
QGQYLSPEEKEK	2	Unmodified	1434.6991	0.69907354	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			45.68	44.715	3	0.052372	39346	160511_QHF_FH_JSI10i_2	31.228	1.5392			0.30927	0.37089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.30927	0.37089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118800000	94210000	24594000	0	0	0	118800000	94210000	24594000	0	0	0	0	0	0	41118	2199	38699	251633	337512	337512			1	
QGQYSPMAIEEQVAVIYAGVR	0	Unmodified	2308.1522	0.15216691	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6	6.56	2	5							3	2	3	4	1	98.761	96.296	2;3	9.8996E-239	88979	160511_QHF_FH_JSI11i_2	421.93	387.55			1.1816	1.2813	26.66	10	2	Median	2.1641	1.8441	24.966	2	1	Median	1.1727	1.3755	19.466	3	0	Median	1.1696	1.1958	11.515	4	1	Median	0.75756	0.84687	NaN	1	0	Median	2575500000	1193900000	1381600000	364400000	123090000	241310000	662070000	328620000	333440000	1121500000	502260000	619210000	427540000	239950000	187590000	41119	1263	38700	251634;251635;251636;251637;251638;251639;251640;251641;251642;251643	337513;337514;337515;337516;337517;337518;337519;337520	337516			8	
QGSATVGLK	1	Unmodified	859.47633	0.47633123	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.76	4	4	2			3				4	4	3	2	14.812	11.852	2	5.797E-05	10531	160511_QHF_FH_JSI11i_1	97.431	20.373			0.98188	1.0597	21.462	13	0	Median	1.6502	1.3481	11.066	4	0	Median	0.81318	0.9795	10.08	4	0	Median	0.98188	0.94569	9.3981	3	0	Plateau	0.6917	0.76362	10.06	2	0	Median	4709900000	2488500000	2221300000	1184400000	505730000	678720000	1362100000	803170000	558880000	1235900000	600020000	635880000	927450000	579580000	347860000	41120	1264	38701	251644;251645;251646;251647;251648;251649;251650;251651;251652;251653;251654;251655;251656	337521;337522;337523;337524;337525;337526;337527;337528;337529;337530;337531;337532;337533;337534;337535;337536	337522			15	
QGSEIQDSPDFR	0	Unmodified	1377.6161	0.61607219	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	31.403	30.8	2	1.0172E-07	27418	160511_QHF_FH_JSI10i_1	137.01	129.36			0.87882	0.93754	35.222	4	0	Median	1.7291	1.4566	NaN	1	0	Median	0.76474	0.8969	NaN	1	0	Median	1.0099	0.98002	NaN	1	0	Median	0.58578	0.61759	NaN	1	0	Median	316090000	158600000	157490000	64413000	25085000	39328000	114220000	63900000	50322000	75566000	34930000	40636000	61890000	34688000	27201000	41121	3805	38702	251657;251658;251659;251660	337537;337538;337539	337539			3	
QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK	1	Oxidation (M)	3572.5274	0.5273997	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.975	58.327	3	5.4907E-27	52669	160511_QHF_FH_JSI10i_1	109.27	104.46			0.92351	0.9904	21.309	4	0	Median	1.3202	1.0854	NaN	1	0	Median	0.85971	1.0181	NaN	1	0	Median	0.99205	0.96345	NaN	1	0	Median	0.6527	0.67435	NaN	1	0	Median	258100000	142990000	115110000	56469000	22730000	33739000	61768000	37096000	24672000	88312000	54129000	34183000	51552000	29040000	22512000	41122	2380	38703	251661;251662;251663;251664	337540;337541;337542;337543;337544;337545;337546;337547;337548;337549;337550	337548		1934	11	
QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK	1	Unmodified	3556.5325	0.53248508	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.09	0.287	10	1								2	3	3	3	64.386	63.756	3;4	1.9139E-61	57819	160511_QHF_FH_JSI11i_1	171.48	167.06			0.94619	1.02	26.01	11	4	Median	1.5013	1.2378	6.4412	2	0	Median	0.84862	1.0086	7.9645	3	0	Median	1.1069	1.0822	2.9816	3	2	Plateau	0.65029	0.67222	15.218	3	2	Median	3083700000	1625700000	1458000000	666010000	271490000	394520000	789480000	420950000	368540000	681130000	335940000	345190000	947100000	597340000	349760000	41123	2380	38703	251665;251666;251667;251668;251669;251670;251671;251672;251673;251674;251675	337551;337552;337553;337554;337555;337556;337557;337558;337559;337560;337561;337562;337563;337564;337565;337566;337567;337568;337569;337570;337571;337572;337573;337574;337575;337576;337577;337578;337579	337551			29	
QGSLINSLKPSGPTPASGQLSSGDK	2	Unmodified	2425.2449	0.24488132	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			57.405	55.857	3	3.3381E-06	45703	160511_QHF_FH_JSI9i_3	59.678	45.368			1.028	1.001	6.2113	2	0	Median	1.2886	1.0459	NaN	1	0	Median	0.82012	0.95796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68656000	33668000	34988000	43346000	20986000	22360000	25310000	12682000	12628000	0	0	0	0	0	0	41124	1443	38704	251676;251677;251678;251679	337580;337581;337582;337583;337584;337585;337586	337584			7	
QGSPGSVSK	1	Unmodified	845.4243	0.42429566	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.4442	5.3391	2	0.0066058	3146	160511_QHF_FH_JSI11i_1	55.461	29.078			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41125	132	38705	251680	337587	337587			1	
QGSTQGRLDDFFK	1	Unmodified	1497.7212	0.72120596	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.29	48.29	3	0.016244	42666	160511_QHF_FH_JSI11i_3	39.006	29.206			1.3182	1.2586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3182	1.2586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81504000	39025000	42479000	0	0	0	0	0	0	81504000	39025000	42479000	0	0	0	41126	1488	38706	251681	337588	337588			1	
QGTAVEVEAESLDPTVKPVDVGGDEPEEK	2	Unmodified	3023.4459	0.44588513	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	69.056	68.631	3	1.2849E-33	62518	160511_QHF_FH_JSI12i_1	153.01	146.84			1.0054	1.197	33.313	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0054	1.197	NaN	1	0	Median	1.3886	1.3513	NaN	1	0	Median	0.70785	0.72112	NaN	1	0	Median	190680000	98289000	92391000	0	0	0	75972000	39296000	36676000	58779000	24362000	34416000	55930000	34630000	21300000	41127	1649	38707	251682;251683;251684	337589;337590;337591;337592;337593;337594;337595;337596	337593			8	
QGTEIDGR	0	Unmodified	874.41446	0.41445926	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5.1	4	3	1			3				1	4	3	3	8.2134	5.9398	2	0.00013552	3447	160513_QHF_FH_JSI12Kac_3	122.44	61.727			0.81634	0.97719	19.431	11	0	Median	1.5785	1.3227	NaN	1	0	Median	0.789	0.95422	8.9103	4	0	Median	1.0505	1.0232	2.8781	3	0	Plateau	0.68409	0.72118	2.3092	3	0	Plateau	13358000000	6554700000	6803600000	2935000000	1112900000	1822100000	3478400000	1792900000	1685500000	3457700000	1596600000	1861100000	3487200000	2052200000	1435000000	41128	1154	38708	251685;251686;251687;251688;251689;251690;251691;251692;251693;251694;251695	337597;337598;337599;337600;337601;337602;337603;337604;337605;337606;337607;337608;337609;337610;337611;337612	337609			16	
QGTESPR	0	Unmodified	773.36678	0.36678078	5852				yes	yes	0	0	0	0			By MS/MS		1	0	1											1		4.711	4.6117	2	0.014353	2355	160511_QHF_FH_JSI11i_1	66.993	1.2162	+		0.85699	0.84088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85699	0.84088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	251680000	134530000	117150000	0	0	0	0	0	0	251680000	134530000	117150000	0	0	0	41129	5852	38709	251696	337613	337613			1	
QGTFHSQQALEYGTK	1	Unmodified	1693.806	0.80599822	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		5	3						2	2	2	3	3	29.423	27.772	2;3	4.1711E-12	24305	160511_QHF_FH_JSI10i_2	107.82	97.191			1.145	1.0921	30.851	7	7	Median	1.5027	1.2768	NaN	1	1	Median	0.83633	1.0065	NaN	1	1	Median	1.1487	1.0921	19.079	3	3	Plateau	0.64299	0.69444	16.498	2	2	Median	432320000	224540000	207780000	60655000	20688000	39967000	52633000	28166000	24467000	144680000	67662000	77015000	174360000	108030000	66331000	41130	1800	38710	251697;251698;251699;251700;251701;251702;251703;251704;251705;251706	337614;337615;337616;337617;337618;337619;337620;337621;337622;337623;337624;337625	337622			12	
QGTGLQGQAVFK	1	Unmodified	1232.6513	0.65133548	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	36.804	36.197	2	1.1933E-06	30833	160511_QHF_FH_JSI11i_2	101.97	84.538			0.68362	0.68997	9.493	4	0	Median	0.81337	0.67668	NaN	1	0	Median	0.59782	0.70352	NaN	1	0	Median	0.78173	0.75132	NaN	1	0	Median	0.58652	0.59942	NaN	1	0	Median	322710000	209970000	112740000	44917000	33727000	11190000	83293000	54996000	28298000	108630000	63201000	45434000	85862000	58042000	27820000	41131	3778	38711	251707;251708;251709;251710;251711;251712;251713	337626;337627;337628;337629;337630;337631	337630			4	
QGTIFLAGPPLVK	1	Unmodified	1339.7864	0.7863724	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.8	6.37		2						3			2	1	2	81.839	75.2	2	1.91E-05	68852	160511_QHF_FH_JSI12i_2	118.9	114.29			0.75128	0.86704	21.062	5	2	Median	NaN	NaN	NaN	0	0	Median	0.88648	1.0373	25.35	2	1	Median	1.0841	1.0374	NaN	1	0	Median	0.7084	0.76702	6.1996	2	1	Median	97806000	51499000	46306000	0	0	0	51861000	24572000	27289000	3560500	1780400	1780000	42384000	25147000	17237000	41132	4852	38712	251714;251715;251716;251717;251718	337632;337633;337634;337635;337636	337632			5	
QGTPLIAFSLLPHEQK	1	Unmodified	1777.9727	0.97266962	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	87.35	86.9	2;3	1.0852E-05	75439	160511_QHF_FH_JSI12i_3	95.767	83.743			0.85114	0.91992	11.138	6	0	Median	1.0668	0.95034	NaN	1	0	Median	0.82685	1.0237	NaN	1	0	Median	0.9834	0.94939	9.0609	2	0	Median	0.74518	0.80472	6.5176	2	0	Median	568400000	311690000	256710000	48310000	24120000	24191000	79389000	44892000	34497000	236630000	126120000	110510000	204080000	116560000	87515000	41133	2795	38713	251719;251720;251721;251722;251723;251724;251725	337637;337638;337639;337640;337641;337642;337643;337644;337645;337646;337647;337648;337649;337650;337651;337652	337652			16	
QGTQYTFSSIEREEYGK	1	Unmodified	2021.933	0.93304923	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	1	5	2	51.764	49.205	2;3	5.0463E-09	43522	160511_QHF_FH_JSI11i_3	146.96	122.11			0.90619	0.96684	28.762	9	1	Median	1.5101	1.291	15.765	2	0	Median	0.79602	0.96684	NaN	1	0	Median	0.94552	0.90881	22.708	4	1	Median	0.60943	0.65735	5.5618	2	0	Median	1544000000	836100000	707920000	155840000	62110000	93728000	257610000	140190000	117420000	729920000	376190000	353730000	400660000	257610000	143040000	41134	2277	38714	251726;251727;251728;251729;251730;251731;251732;251733;251734;251735	337653;337654;337655;337656;337657;337658;337659;337660;337661;337662;337663;337664;337665;337666;337667;337668;337669;337670	337654			18	
QGTTPPIWHLTDK	1	Unmodified	1492.7674	0.76742787	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	54.289	53.536	2;3	0.00022947	47373	160511_QHF_FH_JSI10i_2	64.374	57.335			0.95135	1.0712	33.076	7	1	Median	1.9206	1.6609	40.924	2	1	Median	0.91189	1.1057	4.4777	2	0	Median	1.0332	1.048	NaN	1	0	Median	0.80248	0.85157	15.676	2	0	Median	935570000	487300000	448270000	123460000	45362000	78094000	208590000	112340000	96241000	273130000	147740000	125390000	330390000	181850000	148550000	41135	1857	38715	251736;251737;251738;251739;251740;251741;251742;251743	337671;337672;337673;337674;337675;337676;337677	337676			4	
QGTYGGYFR	0	Unmodified	1047.4774	0.47739386	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	30.897	30.22	2	9.352E-05	25374	160511_QHF_FH_JSI12i_3	94.309	68.138			0.98931	1.1593	30.885	6	3	Median	NaN	NaN	NaN	0	0	Median	1.1656	1.4083	20.127	2	1	Median	1.1606	1.1268	19.457	2	1	Median	0.79897	0.84624	37.127	2	1	Median	876710000	434300000	442410000	0	0	0	212400000	111710000	100690000	358400000	168230000	190170000	305910000	154360000	151550000	41136	40	38716	251744;251745;251746;251747;251748;251749	337678;337679;337680;337681;337682;337683;337684;337685	337685			8	
QGVAEAAGK	1	Unmodified	829.42938	0.42938104	1472	P37840	SNCA	Alpha-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.2005	6.8648	2	2.693E-05	4784	160511_QHF_FH_JSI12i_1	103.83	60.709			1.064	1.1317	35.403	4	0	Median	1.8496	1.5417	NaN	1	0	Median	0.93314	1.0895	NaN	1	0	Median	1.2132	1.1756	NaN	1	0	Median	0.62789	0.66001	NaN	1	0	Median	720470000	388660000	331810000	212240000	88132000	124100000	195980000	115510000	80470000	166770000	88791000	77979000	145480000	96222000	49259000	41137	1472	38717	251750;251751;251752;251753	337686;337687;337688;337689;337690;337691	337689			6	
QGVDIEAAR	0	Unmodified	957.48796	0.48795855	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.107	22.568	2	0.00052067	19942	160511_QHF_FH_JSI12i_1	79.148	49.575			0.65636	0.70172	10.687	4	1	Linear	1.0208	0.83358	NaN	1	1	Median	0.66642	0.78288	NaN	1	0	Median	0.80869	0.7913	NaN	1	0	Median	0.63155	0.65254	NaN	1	0	Median	357580000	196570000	161010000	81181000	35055000	46126000	90363000	60747000	29615000	83494000	39875000	43619000	102540000	60890000	41651000	41138	227	38718	251754;251755;251756;251757	337692;337693;337694;337695;337696	337693			5	
QGVDQKLVEGQEK	2	Acetyl (K)	1498.7627	0.76273643	434	O60664	PLIN3	Perilipin-3	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		44.83	35.527	2	0.029047	20016	160513_QHF_FH_JSI11Kac_3	54.471	41.894			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1362200	1362200	0	0	0	0	0	0	0	1362200	1362200	0	0	0	0	41139	434	38719	251758	337697	337697	220		1	
QGVEDAFYTLVR	0	Unmodified	1396.6987	0.69867961	785	P01111	NRAS	GTPase NRas	no	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		80.414	79.764	2	0.0028699	70394	160511_QHF_FH_JSI9i_2	56.359	43.403			0.57569	0.55289	32.046	2	1	Median	0.49855	0.44078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66477	0.69351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53456000	32586000	20870000	16359000	11461000	4897600	0	0	0	37098000	21125000	15972000	0	0	0	41140	785	38720	251759;251760	337698;337699;337700	337699			3	
QGVFSSLNHIVEK	1	Unmodified	1456.7674	0.76742787	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		59.058	57.91	2;3	3.3428E-08	51101	160511_QHF_FH_JSI11i_3	101.71	75.773			0.96963	0.82776	21.571	4	1	Linear	1.3987	1.1755	NaN	1	1	Median	0.96963	1.1299	16.617	2	0	Median	0.83717	0.77939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220150000	94884000	125270000	34641000	11783000	22859000	83700000	39547000	44153000	101810000	43554000	58256000	0	0	0	41141	3028	38721	251761;251762;251763;251764;251765	337701;337702;337703;337704;337705;337706	337702			6	
QGVGKYINPAATK	2	Acetyl (K)	1387.746	0.74596415	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	1.08						3	3	4	3	1	2	5	5	52.247	42.108	2	4.1492E-52	23940	160513_QHF_FH_JSI12Kac_4	217.14	185.91			0.94323	1.027	22.85	9	0	Median	1.5307	1.2929	NaN	1	0	Median	0.85153	1.0245	0.34267	2	0	Median	1.6294	1.6089	29.708	3	0	Median	0.89396	0.96673	4.9656	3	0	Median	466080000	211680000	254400000	3911600	1440900	2470700	137400000	67652000	69751000	170050000	66465000	103580000	154720000	76117000	78598000	41142	2392	38722	251766;251767;251768;251769;251770;251771;251772;251773;251774;251775;251776;251777;251778	337707;337708;337709;337710;337711;337712;337713;337714;337715;337716;337717;337718;337719;337720;337721;337722;337723;337724;337725	337717	2465		19	
QGVHAAGAAEAGPLASVPAQSAK	1	Unmodified	2087.076	0.075965495	4104	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	41.133	40.455	3	3.1878E-10	34483	160511_QHF_FH_JSI12i_3	98.002	91.154			0.92781	0.96021	23.806	6	1	Median	1.4099	1.194	NaN	1	1	Median	0.70483	0.86195	NaN	1	0	Median	1.1317	1.0861	3.902	2	0	Median	0.70914	0.7369	23.91	2	0	Median	350240000	181080000	169160000	49567000	19507000	30060000	58393000	29030000	29363000	132030000	69156000	62871000	110260000	63389000	46868000	41143	4104	38723	251779;251780;251781;251782;251783;251784	337726;337727;337728;337729;337730;337731;337732;337733;337734;337735	337735			10	
QGVLGIK	1	Unmodified	713.44357	0.44357454	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	2	3	3	28.827	28.152	2	0.0071107	25368	160511_QHF_FH_JSI12i_1	88.643	28.349			0.83396	0.83269	37.087	11	1	Median	1.217	1.0228	16.114	3	0	Plateau	0.84434	1.0043	2.5639	2	0	Median	0.79638	0.83269	37.601	3	1	Plateau	0.62391	0.68723	15.104	3	0	Plateau	5522600000	3096800000	2425800000	1223700000	562510000	661180000	1322800000	732980000	589840000	1572200000	878590000	693560000	1404000000	922730000	481240000	41144	1227	38724	251785;251786;251787;251788;251789;251790;251791;251792;251793;251794;251795	337736;337737;337738;337739;337740;337741;337742;337743;337744;337745;337746;337747;337748;337749	337739			14	
QGVLGIKVK	2	Acetyl (K)	982.61752	0.61751616	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		60.869	49.973	2	0.039838	27287	160513_QHF_FH_JSI11Kac_5	45.972	18.09			0.24103	0.23664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24103	0.23664	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7371000	6326300	1044700	0	0	0	0	0	0	7371000	6326300	1044700	0	0	0	41145	1227	38725	251796	337750	337750			1	
QGVLTHGR	0	Unmodified	866.47225	0.47224891	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.73		6	7						4	5	6	4	2	6.2133	4.3465	2;3	0.00014518	3561	160511_QHF_FH_JSI11i_3	125.25	97.936			0.8993	0.98964	31.211	10	0	Median	1.5953	1.373	12.365	3	0	Median	0.885	1.0416	6.9333	3	0	Plateau	0.95778	0.9354	3.7161	2	0	Median	0.5525	0.58104	16.855	2	0	Median	11609000000	3134800000	8474000000	4383800000	800590000	3583200000	4366300000	1268300000	3097900000	2232600000	655160000	1577400000	626090000	410680000	215410000	41146	2018	38726	251797;251798;251799;251800;251801;251802;251803;251804;251805;251806;251807;251808;251809;251810;251811;251812;251813	337751;337752;337753;337754;337755;337756;337757;337758;337759;337760;337761;337762;337763;337764;337765;337766;337767;337768;337769;337770;337771	337751			21	
QGVPMNSLR	0	Unmodified	1000.5124	0.51239916	2053	P63165	SUMO1	Small ubiquitin-related modifier 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.575	28.662	2	0.00056389	24880	160511_QHF_FH_JSI9i_2	78.334	62.132			0.91309	1.0021	24.006	4	2	Median	1.3058	1.1094	NaN	1	0	Median	0.75009	0.90522	NaN	1	0	Median	1.1115	1.1157	NaN	1	1	Median	0.59847	0.66961	NaN	1	1	Median	720740000	372820000	347930000	166850000	76920000	89926000	144840000	81689000	63150000	245360000	118440000	126930000	163690000	95771000	67923000	41147	2053	38727	251814;251815;251816;251817	337772;337773;337774;337775	337774			4	
QGVQVQVSTSNISSLEGAR	0	Unmodified	1959.0021	0.0021318501	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.648	61.007	2	1.8667E-99	55469	160511_QHF_FH_JSI12i_1	264	218.75			0.97804	1.0399	43.203	4	0	Median	2.0914	1.7286	NaN	1	0	Median	0.93571	1.0896	NaN	1	0	Median	1.0223	0.99251	NaN	1	0	Median	0.57819	0.6026	NaN	1	0	Median	457630000	231510000	226120000	94108000	29688000	64420000	148870000	77717000	71150000	89255000	47297000	41958000	125400000	76803000	48597000	41148	1650	38728	251818;251819;251820;251821	337776;337777;337778;337779;337780;337781;337782	337779			7	
QGVSYSVHAYTGQPSPR	0	Unmodified	1832.8806	0.88056015	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.73	6.7		3	2					1	5	3	4	2	2	39.55	34.117	3	6.5009E-05	30112	160511_QHF_FH_JSI10i_2	68.243	62.583			0.73078	0.81233	24.667	9	2	Median	1.0217	0.87589	22.418	2	0	Median	0.53406	0.62227	20.361	3	2	Median	1.1205	1.0579	7.8407	2	0	Median	0.64368	0.68337	24.448	2	0	Median	301030000	171630000	129400000	63187000	33987000	29199000	93437000	65462000	27976000	88998000	39841000	49157000	55406000	32339000	23067000	41149	3411	38729	251822;251823;251824;251825;251826;251827;251828;251829;251830;251831;251832	337783;337784;337785;337786;337787;337788;337789;337790;337791;337792;337793;337794;337795;337796	337788			14	
QGVTEAAEK	1	Unmodified	931.46108	0.4610751	599	O76070	SNCG	Gamma-synuclein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	5.62	4	1			3	4				1	3	4	4	9.0987	4.749	2	1.0691E-06	5319	160511_QHF_FH_JSI9i_1	134.77	91.519			0.80049	0.86758	24.665	12	0	Median	1.2185	1.0203	NaN	1	0	Median	0.70739	0.85021	14.691	3	0	Median	1.3104	1.2878	22.948	4	0	Median	0.7886	0.836	11.279	4	0	Median	9129000000	4520000000	4609000000	2173000000	909050000	1264000000	2641300000	1503500000	1137700000	2407600000	1093100000	1314500000	1907200000	1014400000	892790000	41150	599	38730	251833;251834;251835;251836;251837;251838;251839;251840;251841;251842;251843;251844	337797;337798;337799;337800;337801;337802;337803;337804;337805;337806;337807;337808;337809;337810;337811;337812	337806			16	
QGVTQQQFK	1	Unmodified	1062.5458	0.54580778	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	14.871	14.493	2	2.1666E-06	12039	160511_QHF_FH_JSI10i_1	127.56	99.052			1.0132	1.0796	22.841	4	3	Median	1.6134	1.3622	NaN	1	1	Median	0.83583	0.9802	NaN	1	0	Median	1.0097	0.97959	27.404	2	2	Median	NaN	NaN	NaN	0	0	Median	155720000	88826000	66892000	30344000	15421000	14922000	47247000	27949000	19298000	78127000	45456000	32671000	0	0	0	41151	2588	38731	251845;251846;251847;251848;251849	337813;337814;337815;337816;337817;337818	337816			6	
QGYNMLNLLIHR	0	Unmodified	1470.7766	0.77655277	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	11.7	6.13			1						2	1	1		1	82.644	76.203	3	1.1975E-19	39782	160513_QHF_FH_JSI9Kac_6	138.25	121.71			0.71545	0.84041	51.574	3	1	Median	1.8653	1.5939	NaN	1	0	Median	0.71545	0.84041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5308	0.57446	NaN	1	0	Median	137550000	54724000	82826000	100960000	32906000	68056000	9155300	4867100	4288200	0	0	0	27432000	16951000	10481000	41152	3101	38732	251850;251851;251852	337819;337820	337820			2	
QGYNMLNLLIHRK	1	Unmodified	1598.8715	0.87151579	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	By matching	By MS/MS		By matching	16	0									3	1	1		1	74.95	66.481	4	0.013223	36563	160513_QHF_FH_JSI10Kac_6	40.066	28.09			0.90505	1.085	37.102	3	0	Median	1.5223	1.2885	NaN	1	0	Median	0.90505	1.085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58611	0.63279	NaN	1	0	Median	104480000	50452000	54029000	32506000	13844000	18663000	65561000	32765000	32796000	0	0	0	6414200	3843800	2570300	41153	3101	38733	251853;251854;251855	337821	337821			0	
QGYPEGYYSSK	1	Unmodified	1277.5564	0.55643205	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.235	24.941	2	0.010302	21949	160511_QHF_FH_JSI10i_1	47.228	29.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41154	235	38734	251856	337822	337822			1	
QGYQLIGSHSGVK	1	Unmodified	1372.7099	0.709913	5023	Q9NV66	TYW1	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		28.208	28.208	3	0.014719	24309	160511_QHF_FH_JSI11i_3	41.476	33.751			1.2756	1.2018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2756	1.2018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22160000	8832400	13327000	0	0	0	0	0	0	22160000	8832400	13327000	0	0	0	41155	5023	38735	251857	337823	337823			1	
QGYTAVHYAAAYGNR	0	Unmodified	1640.7696	0.76955314	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		40.64	31.55	3	1.5946E-05	17685	160513_QHF_FH_JSI10Kac_6	100.11	80.51			0.98989	1.1569	30.895	3	0	Median	2.0324	1.7314	NaN	1	0	Median	0.98989	1.1569	NaN	1	0	Median	0.95625	0.94349	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39712000	18681000	21031000	8622300	1928600	6693700	24298000	12562000	11736000	6792000	4190400	2601600	0	0	0	41156	3584	38736	251858;251859;251860	337824;337825;337826;337827;337828	337828			5	
QGYVIYR	0	Unmodified	897.47085	0.47085192	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.41	6.51	4	4	1			2	3	4	4	4	7	6	5	33.814	27.292	2	6.0157E-17	16464	160513_QHF_FH_JSI11Kac_5	164.78	96.742			0.95317	1.0567	31.239	21	3	Median	1.6554	1.4035	48.965	4	1	Median	0.93044	1.0999	10.074	7	1	Median	1.0633	1.0567	5.6945	5	1	Median	0.57413	0.63169	9.5658	5	0	Median	6976400000	3631100000	3345300000	1152900000	434440000	718430000	1983200000	1103000000	880190000	2411700000	1214500000	1197200000	1428700000	879140000	549540000	41157	1951	38737	251861;251862;251863;251864;251865;251866;251867;251868;251869;251870;251871;251872;251873;251874;251875;251876;251877;251878;251879;251880;251881;251882	337829;337830;337831;337832;337833;337834;337835;337836;337837;337838;337839;337840;337841;337842;337843;337844;337845;337846;337847;337848;337849;337850;337851;337852;337853;337854;337855;337856;337857;337858	337847			30	
QGYVLSSIEGR	0	Unmodified	1207.6197	0.619701	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.05	2	5	2					2		2	2	5	2	47.433	46.705	2	3.6245E-16	25607	160513_QHF_FH_JSI11Kac_5	147.12	121.18			1.2235	1.1506	25.582	8	3	Median	1.4476	1.2498	4.5442	2	2	Median	0.81977	0.985	2.194	2	0	Median	1.4694	1.3721	16.28	3	1	Median	0.5978	0.66464	NaN	1	0	Median	1631500000	807010000	824470000	377410000	148850000	228560000	417760000	237800000	179950000	625670000	283640000	342030000	210640000	136710000	73928000	41158	359	38738	251883;251884;251885;251886;251887;251888;251889;251890;251891;251892;251893	337859;337860;337861;337862;337863;337864;337865;337866;337867;337868;337869;337870;337871;337872	337868			14	
QHAAVLEEGVLDPK	1	Unmodified	1504.7886	0.78855725	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	45.032	44.196	2;3	1.239E-05	37921	160511_QHF_FH_JSI11i_2	125.74	99.067			0.86747	0.99361	23.315	4	1	Median	NaN	NaN	NaN	0	0	Median	0.80736	0.99428	NaN	1	1	Median	0.80105	0.82486	26.23	2	0	Median	1.0761	1.1942	NaN	1	0	Median	233220000	129460000	103760000	0	0	0	22476000	14066000	8409400	183100000	100360000	82746000	27644000	15034000	12609000	41159	678	38739	251894;251895;251896;251897	337873;337874;337875;337876;337877	337875			5	
QHDQLEAQK	1	Unmodified	1095.5309	0.530886	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	5.9082	5.5023	2	0.00046381	3394	160511_QHF_FH_JSI11i_2	80.219	36.45			0.98558	0.92305	34.029	4	1	Median	1.033	0.91265	NaN	1	0	Median	0.44416	0.54477	NaN	1	1	Median	0.94034	0.93358	NaN	1	0	Median	1.0825	1.2319	NaN	1	0	Median	144040000	77184000	66856000	31055000	15188000	15867000	31464000	21505000	9958900	46498000	23774000	22723000	35022000	16715000	18307000	41160	2100	38740	251898;251899;251900;251901	337878;337879;337880	337879			3	
QHEADADLINAGK	1	Unmodified	1380.6634	0.66335673	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	8	8					2			3	5	4	6	25.299	23.659	2;3	1.1958E-10	20279	160511_QHF_FH_JSI10i_2	151.79	137.58			0.98232	1.0721	27.877	17	0	Median	1.2595	1.0721	9.1494	3	0	Median	0.89215	1.0546	40.758	4	0	Median	0.91236	0.90417	27.37	4	0	Median	1.1248	1.2361	7.8191	6	0	Median	2263600000	1077700000	1185900000	289780000	122070000	167700000	560810000	320140000	240670000	785590000	362750000	422840000	627390000	272710000	354680000	41161	1865	38741	251902;251903;251904;251905;251906;251907;251908;251909;251910;251911;251912;251913;251914;251915;251916;251917;251918;251919	337881;337882;337883;337884;337885;337886;337887;337888;337889;337890;337891;337892;337893;337894;337895;337896;337897;337898;337899;337900;337901;337902;337903;337904;337905;337906;337907;337908;337909;337910;337911;337912;337913	337912			33	
QHEQPGQGIAPDAVNGQR	0	Unmodified	1900.914	0.91398554	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	24.508	23.271	3	0.0057303	19375	160511_QHF_FH_JSI12i_2	45.094	36.274			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41162	1718	38742	251920	337914	337914			1	
QHESIPGK	1	Unmodified	894.45593	0.45593014	4599	Q9GZP8	IMUP	Immortalization up-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91		7	2					4		4	2	4	3	8.279	5.0978	2;3	0.0015762	5142	160511_QHF_FH_JSI9i_2	87.639	69.2			0.91526	0.96974	26.891	13	2	Median	1.0524	0.89562	27.389	4	1	Median	0.87343	1.0587	3.1761	2	1	Median	0.9863	0.96627	38.577	4	0	Median	0.8785	0.96974	6.5793	3	0	Median	3233300000	1613900000	1619500000	705120000	312440000	392680000	332010000	190790000	141220000	1276100000	584540000	691540000	920130000	526080000	394050000	41163	4599	38743	251921;251922;251923;251924;251925;251926;251927;251928;251929;251930;251931;251932;251933	337915;337916;337917;337918;337919;337920;337921;337922;337923;337924;337925;337926;337927;337928;337929;337930;337931	337923			17	
QHFEWLVK	1	Unmodified	1085.5658	0.56581494	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.67	4.37		7	1						1		4	3	2	52.252	51.563	3	0.00065069	44505	160511_QHF_FH_JSI11i_3	70.919	56.801			1.2093	1.1811	19.059	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5001	1.3515	NaN	1	0	Median	0.9749	1.0322	NaN	1	0	Median	46835000	23466000	23369000	0	0	0	0	0	0	33697000	14756000	18941000	13137000	8709500	4428000	41164	1615	38744	251934;251935;251936;251937;251938;251939;251940;251941;251942	337932;337933;337934;337935;337936;337937;337938;337939;337940;337941	337932			10	
QHFISFDTDR	0	Unmodified	1264.5836	0.58364985	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.533	1	9	3							4	2	4	3	41.391	40.667	2;3	2.6324E-05	34676	160511_QHF_FH_JSI12i_3	71.03	68.241			0.95214	0.96207	29.704	11	1	Median	1.1329	0.96547	42.29	3	1	Plateau	0.9177	1.143	5.8576	2	0	Median	0.95709	0.91725	15.887	3	0	Plateau	0.94665	0.96207	19.755	3	0	Plateau	1139600000	581170000	558420000	128730000	67373000	61357000	111470000	48981000	62492000	379430000	208220000	171210000	519960000	256600000	263360000	41165	1361	38745	251943;251944;251945;251946;251947;251948;251949;251950;251951;251952;251953;251954;251955	337942;337943;337944;337945;337946;337947;337948;337949;337950;337951;337952;337953;337954;337955	337955			10	
QHFISFDTDRSGTVDPQELQK	1	Unmodified	2447.1717	0.17171637	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		58.096	58.096	3	1.2472E-05	51473	160511_QHF_FH_JSI11i_3	65.951	46.054			0.87557	0.81597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87557	0.81597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45073000	26108000	18965000	0	0	0	0	0	0	45073000	26108000	18965000	0	0	0	41166	1361	38746	251956;251957	337956;337957	337956			2	
QHFPATPLLDYALEVEK	1	Unmodified	1970.0149	0.014928368	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	0.492		7	10							1	5	4	7	96.007	95.849	2;3	4.0917E-41	82778	160511_QHF_FH_JSI12i_3	170.91	153.42			1.0052	1.5505	36.533	15	5	Linear	1.1268	0.9916	NaN	1	0	Median	0.84896	1.034	10.409	4	1	Linear	1.0866	1.0608	22.322	4	2	Linear	0.93369	1.0064	57.294	6	2	Median	1289500000	634230000	655260000	103000000	46826000	56172000	163050000	86723000	76327000	587960000	293400000	294560000	435480000	207290000	228200000	41167	1798	38747	251958;251959;251960;251961;251962;251963;251964;251965;251966;251967;251968;251969;251970;251971;251972;251973;251974	337958;337959;337960;337961;337962;337963;337964;337965;337966;337967;337968;337969;337970;337971;337972;337973;337974;337975;337976;337977;337978;337979;337980;337981;337982;337983;337984;337985;337986;337987;337988;337989;337990;337991;337992;337993;337994;337995;337996;337997;337998;337999;338000;338001	337995			44	
QHFYPSR	0	Unmodified	933.4457	0.4456998	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									5	2	2		1	17.418	10.384	2;3	0.0014826	6732	160513_QHF_FH_JSI10Kac_6	87.323	78.46			1.163	1.3571	37.916	4	0	Median	2.5156	2.2957	NaN	1	0	Median	1.163	1.3571	0.67783	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83554	0.91093	NaN	1	0	Median	32230000	15064000	17165000	3411800	1217100	2194700	23582000	10781000	12802000	0	0	0	5235400	3066600	2168800	41168	2217	38748	251975;251976;251977;251978;251979	338002;338003;338004;338005	338004			4	
QHGDVVSAIR	0	Unmodified	1080.5676	0.56760585	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	17.485	16.77	2;3	0.0024143	13880	160511_QHF_FH_JSI12i_2	37.6	25.541			1.027	1.1432	9.1462	4	0	Median	1.3131	1.0992	NaN	1	0	Median	0.97832	1.2059	NaN	1	0	Median	0.98215	0.98794	NaN	1	0	Median	1.0739	1.189	NaN	1	0	Median	334800000	173020000	161770000	69516000	32783000	36733000	71575000	38319000	33256000	115990000	56760000	59229000	77719000	45163000	32556000	41169	198	38749	251980;251981;251982;251983;251984	338006;338007;338008;338009;338010	338006			5	
QHGIPIPVTPK	1	Unmodified	1185.687	0.68699271	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.73	2	8	4					1	8	7	5	5	6	45.481	41.54	2;3	1.5039E-09	36131	160511_QHF_FH_JSI9i_2	155.42	138.03			0.98074	1.0247	13.038	22	2	Median	1.3061	1.1017	9.5509	6	1	Median	0.96065	1.1396	6.7931	5	0	Median	0.95647	0.90516	10.568	5	1	Median	0.90451	0.97266	15.101	6	0	Median	13726000000	6255500000	7470200000	2660000000	1014900000	1645100000	3066400000	1503400000	1562900000	4380700000	2051400000	2329300000	3618600000	1685800000	1932800000	41170	779	38750	251985;251986;251987;251988;251989;251990;251991;251992;251993;251994;251995;251996;251997;251998;251999;252000;252001;252002;252003;252004;252005;252006;252007	338011;338012;338013;338014;338015;338016;338017;338018;338019;338020;338021;338022;338023;338024;338025;338026;338027;338028;338029;338030;338031;338032;338033;338034;338035;338036;338037;338038;338039;338040;338041;338042;338043;338044;338045;338046;338047;338048;338049;338050;338051;338052;338053;338054;338055;338056;338057;338058;338059;338060;338061	338027			51	
QHGPYGAGAFFILK	1	Unmodified	1504.7827	0.78268401	5062	Q9NW81	ATP5SL	ATP synthase subunit s-like protein	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	70.661	70.299	3	0.0018543	60786	160511_QHF_FH_JSI12i_3	59.607	48.663			1.0898	1.0149	43.189	4	2	Median	1.0749	0.94409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3985	1.2567	NaN	1	1	Median	0.72968	0.71944	58.878	2	1	Median	120100000	58507000	61593000	12661000	4939200	7722100	0	0	0	34028000	12157000	21871000	73410000	41411000	31999000	41171	5062	38751	252008;252009;252010;252011	338062;338063;338064	338063			2	
QHGSNTFTVK	1	Unmodified	1117.5516	0.55162144	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	10.199	10.247	2	0.029837	7800	160511_QHF_FH_JSI11i_3	39.848	6.2979			1.9869	1.9595	5.3319	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1554	2.0348	NaN	1	0	Median	1.8315	1.887	NaN	1	0	Median	175300000	53370000	121930000	0	0	0	0	0	0	75957000	19610000	56347000	99345000	33761000	65584000	41172	146	38752	252012;252013	338065;338066;338067	338065			3	
QHIEVLK	1	Unmodified	865.50215	0.50215205	3395	Q8IUD2;O15083	ERC1;ERC2	ELKS/Rab6-interacting/CAST family member 1;ERC protein 2	yes	no	0	0	0	0			By MS/MS		2	0		1										1		9.142	8.9435	3	0.044086	6445	160511_QHF_FH_JSI11i_2	22.131	5.987			0.76735	0.77618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76735	0.77618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1475700000	640270000	835430000	0	0	0	0	0	0	1475700000	640270000	835430000	0	0	0	41173	3395	38753	252014	338068	338068			1	
QHIQVFIDR	0	Unmodified	1154.6196	0.61964142	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.5	6.06		1							3	2	1		1	41.958	37.129	3	0.00025847	20316	160513_QHF_FH_JSI10Kac_6	72.243	60.377			0.35934	0.3641	145	2	1	Median	0.1507	0.1306	NaN	1	1	Median	0.85685	1.0151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25404000	15759000	9644800	6327400	5203600	1123800	19077000	10556000	8520900	0	0	0	0	0	0	41174	5014	38754	252015;252016;252017;252018	338069;338070;338071;338072	338072			4	
QHITLALEK	1	Unmodified	1051.6026	0.60259438	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	34.728	33.894	2;3	9.0936E-06	28667	160511_QHF_FH_JSI11i_2	85.807	56.89			0.90501	1.0488	20.299	9	0	Median	1.031	0.89332	22.689	2	0	Median	0.87456	1.0752	3.8254	2	0	Median	1.1608	1.1833	16.199	3	0	Median	0.75144	0.85583	13.669	2	0	Median	1300200000	698150000	602000000	305170000	148740000	156430000	314040000	179890000	134150000	479440000	254610000	224830000	201510000	114920000	86588000	41175	2780	38755	252019;252020;252021;252022;252023;252024;252025;252026;252027	338073;338074;338075;338076;338077;338078;338079;338080;338081;338082;338083;338084;338085;338086;338087;338088;338089;338090	338086			18	
QHITLALEKQK	2	Acetyl (K)	1349.7667	0.76669959	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	1	0	0	1				By MS/MS	16	0									2				2	50.26	40.539	3	0.017743	21192	160513_QHF_FH_JSI12Kac_6	46.159	34.9			1.3846	1.4969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3846	1.4969	NaN	1	1	Median	6964000	4281600	2682400	0	0	0	0	0	0	0	0	0	6964000	4281600	2682400	41176	2780	38756	252028;252029	338091;338092	338092	2683		2	
QHLASIYEK	1	Unmodified	1087.5662	0.56620887	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		21.02	20.435	2;3	0.017889	16699	160511_QHF_FH_JSI11i_2	52.126	34.09			0.45091	0.49927	59.074	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6145	0.75813	NaN	1	1	Median	0.33087	0.32879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189020000	132220000	56807000	0	0	0	86840000	56437000	30403000	102180000	75778000	26405000	0	0	0	41177	4411	38757	252030;252031	338093;338094	338093			2	
QHLEETTQK	1	Unmodified	1112.5462	0.54620171	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	5.7993	5.3934	2	6.0307E-12	3275	160511_QHF_FH_JSI11i_2	167.24	128.45			1.0676	1.1786	11.336	4	0	Median	1.4695	1.276	NaN	1	0	Median	0.92087	1.1062	NaN	1	0	Median	1.2377	1.2558	NaN	1	0	Median	0.89584	1.0035	NaN	1	0	Median	582650000	268500000	314150000	122870000	45216000	77658000	118110000	56287000	61820000	178970000	82354000	96620000	162690000	84641000	78049000	41178	1016	38758	252032;252033;252034;252035	338095;338096;338097;338098;338099;338100;338101	338099			7	
QHLEIELK	1	Unmodified	1008.5604	0.56039521	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	35.704	34.619	3	0.0013766	29748	160511_QHF_FH_JSI12i_2	64.42	37.631			1.0241	1.1733	48.099	3	1	Median	NaN	NaN	NaN	0	0	Median	1.162	1.4326	66.04	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0241	1.1733	NaN	1	0	Median	91217000	38439000	52779000	0	0	0	43946000	20581000	23366000	0	0	0	47271000	17858000	29413000	41179	1085	38759	252036;252037;252038;252039	338102;338103;338104;338105	338102			3	
QHLEITGGQVR	0	Unmodified	1236.6575	0.65748349	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	23.016	22.085	2;3	7.7717E-05	18891	160511_QHF_FH_JSI9i_2	90.906	77.869			1.011	1.0832	27.246	6	1	Median	1.5645	1.3412	41.143	2	0	Median	0.96899	1.1702	NaN	1	0	Median	0.95328	0.97209	NaN	1	0	Median	0.88593	0.97581	27.746	2	1	Median	421630000	188750000	232870000	130920000	49353000	81563000	57189000	26382000	30807000	75649000	40560000	35088000	157870000	72456000	85416000	41180	1609	38760	252040;252041;252042;252043;252044;252045	338106;338107;338108;338109;338110;338111;338112;338113;338114;338115;338116	338110			11	
QHLENDPGSNEDTDIPK	1	Unmodified	1907.8497	0.84971353	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	3.88	8	1					1			2	3	2	3	27.182	25.745	2;3	2.1959E-65	22696	160511_QHF_FH_JSI10i_1	166.62	162.65			0.94268	0.92921	25.128	10	3	Median	0.83535	0.69774	3.4801	2	1	Median	1.0451	1.2828	20.207	3	1	Median	0.94268	0.9052	2.5302	2	0	Median	1.0458	1.0941	27.174	3	1	Plateau	1238900000	623360000	615590000	217730000	114950000	102770000	357470000	190850000	166630000	291230000	137300000	153930000	372520000	180260000	192260000	41181	328	38761	252046;252047;252048;252049;252050;252051;252052;252053;252054;252055	338117;338118;338119;338120;338121;338122;338123;338124;338125;338126;338127;338128;338129;338130;338131;338132;338133;338134	338126			18	
QHLEPFVGVLSSHFK	1	Unmodified	1723.9046	0.90459006	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	70.781	70.632	4	0.00058107	62873	160511_QHF_FH_JSI11i_3	45.873	41.631			0.95083	0.92165	5.9532	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0187	0.96127	NaN	1	0	Median	0.88746	0.88365	NaN	1	0	Median	102420000	47095000	55322000	0	0	0	0	0	0	41596000	19511000	22085000	60822000	27584000	33237000	41182	4152	38762	252056;252057	338135;338136	338135			2	
QHLFYGQYEGK	1	Unmodified	1368.6463	0.64625011	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.5		1	3						6	1	3	2	4	39.632	31.83	2;3	0.00010655	26973	160511_QHF_FH_JSI11i_3	98.048	74.018			1.1668	1.1187	33.072	7	3	Median	1.5221	1.263	NaN	1	1	Median	0.91401	1.0683	28.976	2	0	Median	1.1697	1.1011	2.2403	2	1	Median	1.3329	1.4817	66.261	2	1	Median	79866000	40852000	39014000	6036900	2203500	3833400	18789000	8527000	10262000	48055000	27084000	20971000	6984400	3037900	3946600	41183	4193	38763	252058;252059;252060;252061;252062;252063;252064;252065;252066;252067	338137;338138;338139;338140;338141;338142;338143;338144;338145;338146	338137			10	
QHLGATGGPGAQLGASFLQAR	0	Unmodified	2036.0552	0.055170474	5077	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				63.949	62.448	3	8.0194E-06	51288	160511_QHF_FH_JSI9i_3	64.87	57.812			0.88611	0.73235	NaN	1	0	Median	0.88611	0.73235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28401000	12213000	16188000	28401000	12213000	16188000	0	0	0	0	0	0	0	0	0	41184	5077	38764	252068	338147;338148	338147			2	
QHLLFMSQIR	0	Unmodified	1271.6809	0.68086147	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	65.259	55.486	2;3	0.0016086	29051	160513_QHF_FH_JSI12Kac_6	52.167	46.295			0.99807	1.0221	19.923	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2172	1.1767	NaN	1	1	Median	0.81836	0.88775	NaN	1	1	Median	24089000	11543000	12546000	0	0	0	0	0	0	9036700	3485200	5551500	15052000	8058200	6994100	41185	4625	38765	252069;252070	338149;338150	338150			2	
QHLNPPGGK	1	Unmodified	946.49846	0.49846366	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									3	1	8.0693	7.9704	2;3	0.0030754	5782	160511_QHF_FH_JSI11i_3	60.895	38.155			1.5366	1.5329	111.21	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33208	0.33785	97.392	2	1	Median	1.5366	1.5329	NaN	1	0	Median	609270000	450210000	159060000	0	0	0	0	0	0	452210000	380320000	71890000	157060000	69891000	87169000	41186	4795	38766	252071;252072;252073;252074	338151;338152;338153;338154	338151			3	
QHLSNMEVQVASQSSQR	0	Unmodified	1927.917	0.91702201	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		5	2						4	3	2	4	2	33.552	29.787	3	1.0106E-08	25645	160511_QHF_FH_JSI11i_3	137.81	118.98			1.1224	1.0744	14.64	11	5	Median	1.3489	1.1246	8.655	3	2	Median	0.94668	1.1272	6.7736	2	1	Median	1.0569	1.0077	21.163	4	1	Median	1.0559	1.1079	24.12	2	1	Median	497900000	240970000	256930000	147380000	69939000	77437000	84791000	44506000	40285000	157510000	72914000	84592000	108230000	53611000	54618000	41187	1016	38767	252075;252076;252077;252078;252079;252080;252081;252082;252083;252084;252085	338155;338156;338157;338158;338159;338160;338161;338162;338163;338164;338165;338166;338167;338168;338169;338170	338157			16	
QHLSNMEVQVASQSSQR	0	Oxidation (M)	1943.9119	0.91193663	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	18.878	18.904	3	0.001295	15318	160511_QHF_FH_JSI12i_3	51.193	38.316			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41188	1016	38767	252086	338171	338171		606	1	
QHLSSVVFIK	1	Unmodified	1156.6604	0.66044361	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.61		4	7					1	8	5	5	5	5	49.161	44.748	2;3	5.4816E-06	24412	160513_QHF_FH_JSI11Kac_6	114.4	97.006			1.0987	1.0862	18.112	19	0	Median	1.0628	0.90674	7.5795	4	0	Median	0.98656	1.2063	16.421	5	0	Median	1.1079	1.0585	14.857	5	0	Median	1.4193	1.3648	13.306	5	0	Linear	2132300000	993350000	1139000000	358220000	147910000	210310000	479790000	252720000	227070000	758480000	352120000	406360000	535840000	240600000	295240000	41189	323	38768	252087;252088;252089;252090;252091;252092;252093;252094;252095;252096;252097;252098;252099;252100;252101;252102;252103;252104;252105;252106	338172;338173;338174;338175;338176;338177;338178;338179;338180;338181;338182;338183;338184;338185;338186;338187;338188;338189;338190;338191;338192;338193;338194;338195;338196;338197;338198;338199;338200;338201	338185			29	
QHLYVDK	1	Unmodified	901.46577	0.46576654	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		12.088	11.707	2	0.026294	9521	160511_QHF_FH_JSI10i_2	54.157	36.772			0.80711	0.89414	15.179	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66106	0.80314	NaN	1	0	Median	0.98542	0.99545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	174720000	85372000	89350000	0	0	0	62624000	32060000	30564000	112100000	53311000	58787000	0	0	0	41190	1800	38769	252107;252108	338202;338203	338203			2	
QHLYVDKNTK	2	Acetyl (K)	1286.6619	0.66190017	1800	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	15.7	0.471								1	2		1	1	1	29.368	20.376	3	0.0011428	11797	160513_QHF_FH_JSI11Kac_6	63.944	46.501			0.45377	0.43465	48.52	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.94909	1.0842	NaN	1	1	Median	0.43989	0.41525	NaN	1	0	Median	0.70232	0.75974	NaN	1	0	Median	16020000	9287600	6732200	0	0	0	2208200	845090	1363100	10031000	6904700	3126200	3780700	1537800	2242800	41191	1800	38770	252109;252110;252111	338204;338205	338204	1819		2	
QHMDITGEENPLNK	1	Unmodified	1624.7515	0.75151981	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	3	3	1	41.225	40.471	2;3	8.1666E-22	34532	160511_QHF_FH_JSI11i_2	180.2	172.63			0.99534	1.0229	24.817	8	1	Median	0.97019	0.84666	NaN	1	0	Median	0.97636	1.1931	39.106	3	1	Plateau	1.0276	1.0237	4.8424	3	0	Median	1.1093	1.2548	NaN	1	0	Median	948680000	475240000	473440000	41996000	20975000	21021000	351070000	182900000	168170000	504970000	243850000	261120000	50638000	27518000	23120000	41192	4715	38771	252112;252113;252114;252115;252116;252117;252118;252119	338206;338207;338208;338209;338210;338211;338212;338213;338214;338215;338216	338212			11	
QHPQPYIFPDSPGGTSYER	0	Unmodified	2175.0021	0.0021318501	5741	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	52.128	51.439	3	7.2292E-07	43891	160511_QHF_FH_JSI12i_3	97.095	93.375			1.1319	1.0647	15.318	6	1	Median	1.2158	1.0244	NaN	1	0	Median	0.79116	0.9529	NaN	1	0	Median	1.2662	1.2363	21.987	2	1	Median	1.0915	1.1607	11.348	2	0	Median	429790000	202280000	227510000	50325000	19828000	30497000	92784000	51677000	41107000	140900000	65275000	75621000	145780000	65497000	80287000	41193	5741	38772	252120;252121;252122;252123;252124;252125	338217;338218;338219;338220;338221;338222;338223;338224;338225;338226;338227	338226			11	
QHPVPPPAQNQNQVR	0	Unmodified	1708.8757	0.87574954	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.43		9	5						1	2	3	6	4	13.695	12.736	2;3	2.9183E-15	10613	160511_QHF_FH_JSI9i_2	115.37	85.46			0.92911	0.72338	19.324	13	6	Linear	1.0967	0.92437	13.91	2	0	Median	0.69048	0.85172	10.515	3	2	Plateau	0.87875	0.89932	20.511	5	2	Median	1.1006	1.1336	20.398	3	2	Median	697390000	356160000	341230000	97628000	44360000	53268000	146280000	81006000	65271000	282750000	152600000	130150000	170740000	78190000	92547000	41194	2723	38773	252126;252127;252128;252129;252130;252131;252132;252133;252134;252135;252136;252137;252138;252139;252140	338228;338229;338230;338231;338232;338233;338234;338235;338236;338237;338238;338239;338240;338241;338242;338243;338244;338245;338246	338234			19	
QHPYTFPGGSGTVFAR	0	Unmodified	1720.8322	0.8321534	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							1	4	3	2	52.71	51.871	2;3	5.3942E-06	45594	160511_QHF_FH_JSI11i_3	85.469	74.854			0.98227	1.1626	18.83	9	1	Median	1.5807	1.2859	NaN	1	0	Median	0.99254	1.0826	13.199	4	0	Linear	1.4683	1.4346	8.5127	2	0	Median	1.1391	1.1676	28.623	2	1	Median	999630000	453340000	546290000	81540000	31054000	50485000	440260000	227860000	212400000	277370000	118480000	158890000	200460000	75943000	124520000	41195	2294	38774	252141;252142;252143;252144;252145;252146;252147;252148;252149;252150	338247;338248;338249;338250;338251;338252;338253;338254;338255;338256;338257;338258;338259;338260	338247			14	
QHQASEEIR	0	Unmodified	1096.5261	0.52613497	995	P11277	SPTB	Spectrin beta chain, erythrocytic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	23.212	22.003	2	0.02668	18269	160511_QHF_FH_JSI12i_2	42.599	6.7186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41196	995	38775	252151	338261	338261			1	
QHQLAPLPAQAVFASGTR	0	Unmodified	1891.0064	0.006429367	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.447	60.935	3	0.012533	52987	160511_QHF_FH_JSI11i_2	38.017	32.808			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41197	3832	38776	252152	338262	338262			1	
QHQLYVGVLGSK	1	Unmodified	1327.7248	0.72483478	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	2	2	4	4	48.911	41.426	2;3	1.5082E-12	22789	160513_QHF_FH_JSI10Kac_6	129.89	110.62			0.92859	0.9732	16.032	10	0	Median	1.2743	1.0994	15.564	2	0	Median	0.8973	1.0372	10.692	2	0	Median	0.84733	0.78962	15.292	3	0	Median	0.87906	0.94699	15.74	3	0	Median	470300000	231490000	238810000	75955000	30211000	45745000	81920000	39570000	42350000	168750000	90659000	78091000	143680000	71055000	72623000	41198	603	38777	252153;252154;252155;252156;252157;252158;252159;252160;252161;252162;252163;252164	338263;338264;338265;338266;338267;338268;338269;338270;338271;338272;338273;338274	338273			12	
QHQMQLVDSIVR	0	Unmodified	1452.7507	0.75073195	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		48.572	48.572	2;3	5.6181E-05	42958	160511_QHF_FH_JSI11i_3	59.975	52.431			0.82292	0.76882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82292	0.76882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49584000	28784000	20800000	0	0	0	0	0	0	49584000	28784000	20800000	0	0	0	41199	1016	38778	252165;252166	338275;338276;338277	338275			3	
QHQNTMEDK	1	Unmodified	1129.4822	0.48222124	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	2	16								5	3	5	5	1.9344	1.5859	2;3	2.7966E-07	811	160511_QHF_FH_JSI9i_2	117.04	98.305			1.2628	1.5572	111.86	17	8	Median	1.1889	1.0294	148.51	4	1	Median	0.55728	0.69657	106.1	3	3	Plateau	0.56252	0.53942	104.49	5	2	Median	1.5603	1.7274	125.49	5	2	Median	707590000	361200000	346390000	125400000	53614000	71782000	116800000	65021000	51782000	263100000	136280000	126820000	202290000	106280000	96006000	41200	2094	38779	252167;252168;252169;252170;252171;252172;252173;252174;252175;252176;252177;252178;252179;252180;252181;252182;252183;252184	338278;338279;338280;338281;338282;338283;338284;338285;338286;338287;338288;338289;338290;338291;338292;338293;338294;338295;338296;338297;338298;338299;338300;338301;338302	338290			25	
QHSITKNTAK	2	Acetyl (K)	1168.62	0.62003536	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.663							1	4	5	2	3	3	2	10.127	1.378	2;3	2.4784E-09	3626	160513_QHF_FH_JSI11Kac_6	143.5	129.27			0.78251	0.84962	37.018	10	0	Median	1.1028	0.94653	2.1613	2	0	Median	0.92158	1.1159	7.8112	3	0	Plateau	0.46287	0.4517	12.211	3	0	Median	0.71171	0.774	0.069141	2	0	Median	221100000	134670000	86422000	20984000	9522200	11462000	49853000	24096000	25757000	113670000	79839000	33828000	36591000	21217000	15374000	41201	455	38780	252185;252186;252187;252188;252189;252190;252191;252192;252193;252194	338303;338304;338305;338306;338307;338308;338309;338310;338311;338312;338313;338314;338315;338316;338317	338305	232		14	
QHSLLKR	1	Acetyl (K)	922.53485	0.53484916	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	19.472	11.721	3	0.031554	7575	160513_QHF_FH_JSI10Kac_6	87.181	49.454			0.4359	0.47246	96.388	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3728	1.6229	NaN	1	0	Median	0.24908	0.24282	NaN	1	0	Median	0.4359	0.47246	NaN	1	0	Median	70855000	48071000	22784000	0	0	0	23299000	11095000	12203000	32475000	25729000	6746800	15081000	11247000	3834100	41202	2024	38781	252195;252196;252197	338318;338319;338320	338320			3	
QHSNSNMVIMLIGNK	1	Unmodified	1684.8389	0.83889503	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.76	6.62		2	6						9	5	4	4	4	69.052	64.111	2;3	2.4574E-159	35076	160513_QHF_FH_JSI10Kac_6	318.91	286.66			1.0431	0.98383	11.951	17	2	Median	1.2901	1.1056	15.792	5	2	Median	0.82139	0.95326	10.194	4	0	Median	1.062	1.0126	1.5794	4	0	Median	0.88489	0.92573	12.488	4	0	Median	3450000000	1668900000	1781100000	945840000	412220000	533620000	1106100000	589100000	517040000	820280000	387740000	432540000	577700000	279830000	297880000	41203	1930	38782	252198;252199;252200;252201;252202;252203;252204;252205;252206;252207;252208;252209;252210;252211;252212;252213;252214	338321;338322;338323;338324;338325;338326;338327;338328;338329;338330;338331;338332;338333;338334;338335;338336;338337;338338;338339;338340;338341;338342;338343;338344;338345;338346;338347;338348;338349;338350;338351;338352;338353	338353			33	
QHSNSNMVIMLIGNK	1	Oxidation (M)	1700.8338	0.83380965	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.322								2	15	6	6	3	2	61.514	52.294	2;3	1.396E-23	26619	160513_QHF_FH_JSI10Kac_6	152.4	134.26			1.0066	1.0125	18.551	14	4	Median	1.1969	1.0173	17.952	4	1	Median	0.84253	0.99062	25.413	6	2	Median	1.0667	1.0481	5.8242	2	0	Median	0.95811	1.009	7.7326	2	1	Median	915700000	451560000	464140000	308730000	131400000	177330000	379590000	200540000	179050000	82987000	45334000	37654000	144390000	74280000	70111000	41204	1930	38782	252215;252216;252217;252218;252219;252220;252221;252222;252223;252224;252225;252226;252227;252228;252229;252230;252231	338354;338355;338356;338357;338358;338359;338360;338361;338362;338363;338364;338365;338366;338367;338368;338369;338370;338371;338372;338373;338374;338375;338376;338377;338378;338379	338376		1599;1600	26	
QHSNSNMVIMLIGNK	1	2 Oxidation (M)	1716.8287	0.82872428	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	2	0	By MS/MS	By matching	By MS/MS	By MS/MS	15.8	0.4								1	4	1	1	1	2	51.883	42.303	3	0.00012524	22493	160513_QHF_FH_JSI9Kac_6	79.337	78.882			0.95585	0.94594	13.42	5	0	Median	1.1111	0.94594	NaN	1	0	Median	0.78939	0.9294	NaN	1	0	Median	0.816	0.79855	NaN	1	0	Median	1.0053	1.0845	8.4648	2	0	Median	196010000	88054000	107950000	92950000	38764000	54187000	35823000	18359000	17464000	19590000	8450300	11140000	47643000	22481000	25161000	41205	1930	38782	252232;252233;252234;252235;252236	338380;338381;338382	338381		1599;1600	2	
QHSPIQVPMVAGSPLGATQTCNK	1	Unmodified	2420.194	0.1940485	3577	Q8N9N5	BANP	Protein BANP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.117	75.621	3	0.028569	68870	160511_QHF_FH_JSI10i_1	22.7	18.805			0.9728	1.1001	41.138	5	1	Median	1.316	1.1001	NaN	1	0	Median	0.9728	1.1391	NaN	1	0	Median	1.1808	1.1585	NaN	1	0	Median	0.60313	0.62398	49.943	2	1	Median	907790000	467420000	440360000	206500000	94211000	112280000	212580000	108680000	103900000	251380000	112540000	138830000	237330000	151990000	85341000	41206	3577	38783	252237;252238;252239;252240;252241	338383;338384;338385;338386;338387;338388;338389;338390	338388			8	
QHTFVETESVR	0	Unmodified	1331.647	0.64697839	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	4	2	22.036	21.295	2;3	6.6152E-10	17544	160511_QHF_FH_JSI11i_2	127.87	113.86			0.94063	0.99961	26.745	9	1	Median	1.264	1.1132	13.59	2	0	Median	0.80634	0.99209	2.4146	2	0	Median	0.99013	0.99961	45.459	3	1	Median	0.83624	0.93513	1.943	2	0	Median	1079000000	552270000	526680000	168280000	66878000	101400000	270680000	140260000	130420000	463600000	244190000	219410000	176390000	100950000	75443000	41207	1620	38784	252242;252243;252244;252245;252246;252247;252248;252249;252250;252251	338391;338392;338393;338394;338395;338396;338397;338398;338399;338400;338401;338402;338403;338404;338405;338406	338403			15	
QHTIMPSK	1	Unmodified	940.48004	0.4800364	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			10.819	10.293	2	0.032403	8165	160511_QHF_FH_JSI10i_2	49.536	27.15			0.8923	1.1049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8923	1.1049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70031000	38960000	31071000	0	0	0	70031000	38960000	31071000	0	0	0	0	0	0	41208	2354	38785	252252	338407	338407			1	
QHTTTNVFHFTFMSEK	1	Unmodified	1953.9043	0.90433206	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	71.033	62.293	3;4	2.4956E-05	33949	160513_QHF_FH_JSI10Kac_6	93.152	83.364			1.1365	1.1517	31.544	6	0	Median	0.98548	0.82996	NaN	1	0	Median	0.77025	0.9148	4.3827	2	0	Median	1.6908	1.6288	6.2886	2	0	Median	1.3106	1.4058	NaN	1	0	Median	323040000	158910000	164120000	31740000	15653000	16087000	198080000	102800000	95274000	50338000	20026000	30311000	42883000	20432000	22451000	41209	5552	38786	252253;252254;252255;252256;252257;252258;252259	338408;338409;338410;338411;338412;338413;338414;338415;338416;338417	338415			10	
QHTTTNVFHFTFMSEK	1	Oxidation (M)	1969.8992	0.89924668	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	1	0	By matching			By MS/MS	16	0									2	1			1	62.604	53.13	4	0.020102	27895	160513_QHF_FH_JSI12Kac_6	33.769	29.801			1.2592	1.2194	32.641	2	0	Median	1.1359	0.96804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3959	1.5359	NaN	1	0	Median	34755000	14756000	19999000	21211000	9870400	11341000	0	0	0	0	0	0	13544000	4885900	8657900	41210	5552	38786	252260;252261	338418	338418		2694	0	
QHTVFPAKGSR	1	Acetyl (K)	1268.6626	0.66256887	5401	Q9ULK2	ATXN7L1	Ataxin-7-like protein 1	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			29.808	21.777	3	0.014595	12418	160513_QHF_FH_JSI10Kac_6	36	27.487			0.81951	0.98218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81951	0.98218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7109000	3827700	3281300	0	0	0	7109000	3827700	3281300	0	0	0	0	0	0	41211	5401	38787	252262	338419	338419	3396		1	
QHVFLVSEYLK	1	Unmodified	1361.7343	0.73433683	2964	Q5TBB1	RNASEH2B	Ribonuclease H2 subunit B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	10.4	6.86		2							3	1	1	2	1	70.65	64.896	3	0.0020067	35028	160513_QHF_FH_JSI11Kac_6	37.589	29.076			0.94753	0.98246	65.215	5	2	Median	0.68013	0.59066	NaN	1	0	Median	2.5599	3.2939	NaN	1	1	Median	0.91254	0.89036	13.919	2	1	Median	0.94753	1.0424	NaN	1	0	Median	84555000	48766000	35789000	27828000	18645000	9183100	12641000	3530400	9110400	29534000	17474000	12059000	14553000	9116900	5435700	41212	2964	38788	252263;252264;252265;252266;252267	338420;338421;338422	338420			3	
QHVIDGEK	1	Unmodified	924.46649	0.46649483	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.86		9	2				1	4		3	3	5	5	7.227	3.9733	2;3	0.00049563	4213	160511_QHF_FH_JSI11i_2	106.36	73.886			0.98544	1.0188	66.931	15	3	Median	1.2231	1.0149	7.3725	3	0	Median	0.97647	1.1993	15.653	3	0	Plateau	0.98544	1.0188	74.241	5	1	Median	1.2438	1.4035	97.141	4	2	Median	7320000000	3430700000	3889400000	1209100000	569470000	639600000	1695400000	1012600000	682780000	2318200000	1089400000	1228900000	2097300000	759230000	1338100000	41213	5475	38789	252268;252269;252270;252271;252272;252273;252274;252275;252276;252277;252278;252279;252280;252281;252282;252283	338423;338424;338425;338426;338427;338428;338429;338430;338431;338432;338433;338434;338435;338436;338437;338438;338439;338440;338441	338432			19	
QHVLDMLFSAFEK	1	Oxidation (M)	1579.7705	0.77046434	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	93.884	93.879	3	0.00059329	81343	160511_QHF_FH_JSI12i_3	57.804	50.9			1.6405	1.7765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6405	1.7765	NaN	1	0	Median	5918700	2675800	3242900	0	0	0	0	0	0	0	0	0	5918700	2675800	3242900	41214	1045	38790	252284	338442	338442		667	1	
QHVSIIEK	1	Unmodified	952.53418	0.53418046	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	16.03	16.081	2	0.014734	12800	160511_QHF_FH_JSI12i_3	49.96	36.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41215	2771	38791	252285	338443	338443			1	
QHVTEAFQFHF	0	Unmodified	1389.6466	0.64658446	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.88		9	2						9	5	4	6	5	70.276	65.761	2;3	7.4622E-48	57580	160511_QHF_FH_JSI12i_2	218.6	199.82			1.0287	1.047	9.3163	19	4	Median	1.2182	1.0438	7.4135	5	2	Median	0.87519	1.0236	9.7584	4	0	Median	1.1397	1.1535	14.842	5	2	Median	0.96447	1.047	4.4573	5	0	Median	2336800000	1152100000	1184700000	448460000	195370000	253090000	640840000	360290000	280540000	615360000	281710000	333650000	632170000	314720000	317450000	41216	309	38792	252286;252287;252288;252289;252290;252291;252292;252293;252294;252295;252296;252297;252298;252299;252300;252301;252302;252303;252304;252305	338444;338445;338446;338447;338448;338449;338450;338451;338452;338453;338454;338455;338456;338457;338458;338459;338460;338461;338462;338463;338464;338465;338466;338467;338468;338469;338470;338471;338472;338473;338474;338475;338476;338477;338478;338479;338480;338481	338449			38	
QHWTMTK	1	Unmodified	930.43817	0.43817159	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	12.95	13.005	2;3	0.0014327	10464	160511_QHF_FH_JSI11i_3	87.181	79.951			1.3333	1.3151	32.707	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84325	0.78399	NaN	1	0	Median	1.3676	1.3743	6.2359	2	0	Median	1205500000	532870000	672640000	0	0	0	0	0	0	387580000	151290000	236290000	817920000	381570000	436350000	41217	2380	38793	252306;252307;252308	338482;338483;338484;338485	338482			4	
QHWTMTKIQK	2	Acetyl (K)	1341.6863	0.68634078	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		46.213	36.554	2;3	0.0043443	19923	160513_QHF_FH_JSI11Kac_6	61.958	49.795			0.062912	0.061635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.062912	0.061635	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14275000	14007000	268120	0	0	0	0	0	0	14275000	14007000	268120	0	0	0	41218	2380	38794	252309;252310	338486;338487	338486	2448;2452		2	
QHYGFVLYR	0	Unmodified	1181.5982	0.5981777	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	4	2	2	2	54.328	45.002	2;3	2.2382E-08	24658	160513_QHF_FH_JSI10Kac_6	122.19	107.52			1.0443	1.0272	10.66	9	0	Median	1.28	1.1071	13.34	3	0	Median	0.81245	0.95803	9.859	2	0	Median	1.0373	0.98084	10.132	2	0	Median	0.98223	1.0635	10.995	2	0	Median	453530000	226700000	226830000	108290000	46542000	61743000	204760000	107500000	97263000	81871000	42745000	39126000	58610000	29912000	28698000	41219	1094	38795	252311;252312;252313;252314;252315;252316;252317;252318;252319;252320	338488;338489;338490;338491;338492;338493;338494;338495;338496;338497;338498;338499;338500;338501	338500			14	
QHYIDLK	1	Unmodified	915.48142	0.48141661	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		10	4						4	4	4	6	4	25.612	22.811	2;3	0.0017902	18723	160511_QHF_FH_JSI11i_2	81.784	44.809			0.95273	0.99719	40.509	16	3	Median	1.5412	1.302	48.651	4	2	Median	0.86969	1.0053	5.0216	3	0	Median	1.0169	0.97031	46.89	5	0	Median	0.89569	0.9853	48.815	4	1	Median	7511100000	3594700000	3916400000	1002300000	437730000	564570000	1853900000	995460000	858490000	2765900000	1277000000	1488900000	1889000000	884570000	1004400000	41220	1209	38796	252321;252322;252323;252324;252325;252326;252327;252328;252329;252330;252331;252332;252333;252334;252335;252336;252337;252338	338502;338503;338504;338505;338506;338507;338508;338509;338510;338511;338512;338513;338514;338515;338516;338517;338518;338519;338520;338521;338522;338523;338524;338525;338526	338518			25	
QHYIDLKDRPFFPGLVK	2	Acetyl (K)	2114.1313	0.13129553	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	1	0	0	2		By MS/MS		By MS/MS	16	0									2		1		1	81.05	73.531	3	0.0023279	40907	160513_QHF_FH_JSI10Kac_6	63.337	48.567			0.77242	0.91055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77242	0.91055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164460000	109770000	54695000	0	0	0	130990000	76297000	54695000	0	0	0	33471000	33471000	0	41221	1209	38797	252339;252340	338527;338528	338528	1085		2	
QIAASSQDSVGR	0	Unmodified	1217.6	0.60002819	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	6.01	6					3	1			1	3	3	3	16.746	12.801	2	1.1268E-09	11101	160511_QHF_FH_JSI10i_1	118.77	73.685			1.0026	1.0245	31.199	8	3	Median	0.59889	0.49583	NaN	1	0	Median	0.87495	1.0201	35.994	2	1	Median	1.0464	1.0245	6.7642	2	0	Median	1.0028	1.0813	15.36	3	2	Median	1051900000	506960000	544960000	198460000	121310000	77147000	225360000	94395000	130970000	9624200	4531500	5092700	618480000	286730000	331750000	41222	1837	38798	252341;252342;252343;252344;252345;252346;252347;252348;252349;252350	338529;338530;338531;338532;338533;338534;338535;338536;338537;338538;338539;338540;338541	338535			13	
QIAEEDFYEK	1	Unmodified	1270.5717	0.57174776	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	41.844	41.197	2	2.442E-14	37381	160511_QHF_FH_JSI12i_1	164.43	146.56			0.99595	1.0688	8.2295	4	0	Median	1.3344	1.0873	NaN	1	0	Median	0.91058	1.0593	NaN	1	0	Median	1.0893	1.0784	NaN	1	0	Median	0.8639	0.91312	NaN	1	0	Median	1528700000	760320000	768370000	277680000	118960000	158720000	370380000	188780000	181600000	444750000	229560000	215190000	435880000	223020000	212860000	41223	1411	38799	252351;252352;252353;252354;252355	338542;338543;338544;338545;338546;338547;338548;338549;338550;338551	338544			10	
QIAIAAMVANFTK	1	Unmodified	1376.7486	0.74860669	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	3	0			4							1	1	1	1	98.673	98.566	2	0.00019792	80200	160511_QHF_FH_JSI9i_3	80.763	53.434			0.69456	0.7858	48.888	4	0	Median	1.7054	1.4636	NaN	1	0	Median	0.87556	1.0618	NaN	1	0	Median	0.54694	0.52596	NaN	1	0	Median	0.55097	0.58155	NaN	1	0	Median	33118000	17325000	15793000	6954900	1902600	5052400	4911000	2814600	2096400	7901400	4319600	3581800	13351000	8288200	5062400	41224	1787	38800	252356;252357;252358;252359	338552;338553	338553			2	
QIALGTSK	1	Unmodified	816.47052	0.47051757	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	20.085	19.492	2	0.0076141	16799	160511_QHF_FH_JSI10i_1	58.981	26.51			0.74339	0.72836	27.423	5	0	Median	0.80476	0.67479	52.03	2	0	Median	0.59665	0.69178	NaN	1	0	Median	0.74339	0.72836	NaN	1	0	Median	0.81476	0.82938	NaN	1	0	Median	423250000	240890000	182360000	136250000	68183000	68062000	101830000	66126000	35708000	100370000	57918000	42449000	84801000	48661000	36139000	41225	998	38801	252360;252361;252362;252363;252364	338554;338555;338556	338555			3	
QIANSQDGYVWQVTDMNR	0	Unmodified	2123.9695	0.96945151	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.436	68.878	2	1.5658E-183	62359	160511_QHF_FH_JSI10i_1	312.25	304.14			0.77649	0.82492	5.0044	4	0	Median	1.0032	0.84815	NaN	1	0	Median	0.70893	0.84496	NaN	1	0	Median	0.77558	0.76223	NaN	1	0	Median	0.7774	0.80536	NaN	1	0	Median	160710000	89008000	71704000	30067000	14663000	15403000	43891000	26555000	17336000	45043000	22012000	23031000	41711000	25778000	15933000	41226	962	38802	252365;252366;252367;252368	338557;338558;338559;338560;338561;338562;338563;338564	338562			8	
QIASIVQR	0	Unmodified	913.53451	0.53451481	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0		By MS/MS			14.5	0.5							1	1			2			22.955	13.55	2	0.019646	9554	160513_QHF_FH_JSI10Kac_4	57.281	0			1.245	1.4371	2.4661	2	0	Median	NaN	NaN	NaN	0	0	Median	1.245	1.4371	2.4661	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8224700	3841300	4383400	0	0	0	8224700	3841300	4383400	0	0	0	0	0	0	41227	3647	38803	252369;252370	338565	338565			1	
QIASVMKHR	1	Acetyl (K)	1110.5968	0.59679749	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.273	20.075	2	0.047825	11709	160513_QHF_FH_JSI11Kac_6	51.066	34.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1711100	1711100	0	0	0	0	0	0	0	1711100	1711100	0	0	0	0	41228	1111	38804	252371	338566;338567	338566			2	
QIATLHAQVADMK	1	Unmodified	1424.7446	0.74458394	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.38		11	6						4	4	3	7	7	41.83	39.451	2;3	1.3552E-07	34502	160511_QHF_FH_JSI9i_2	133.48	120.29			1.0194	0.96984	51.73	21	11	Median	1.0952	0.93532	45.551	4	2	Median	0.79013	0.95837	38.419	3	2	Median	1.1403	1.1644	65.423	7	3	Median	0.82308	0.86876	47.762	7	4	Median	2936700000	1482100000	1454600000	304790000	144140000	160650000	355080000	199710000	155370000	1336800000	652970000	683830000	940060000	485310000	454750000	41229	1436	38805	252372;252373;252374;252375;252376;252377;252378;252379;252380;252381;252382;252383;252384;252385;252386;252387;252388;252389;252390;252391;252392	338568;338569;338570;338571;338572;338573;338574;338575;338576;338577;338578;338579;338580;338581;338582;338583;338584;338585;338586;338587;338588;338589;338590;338591;338592;338593;338594;338595	338579			27	
QIATLHAQVADMK	1	Oxidation (M)	1440.7395	0.73949856	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	27.568	27.546	2;3	6.5405E-10	23020	160511_QHF_FH_JSI12i_3	115.14	87.807			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26573000	11215000	15358000	0	0	0	0	0	0	15358000	0	15358000	11215000	11215000	0	41230	1436	38805	252393;252394;252395;252396	338596;338597;338598;338599	338599		1099	4	
QIATLHAQVADMKK	2	Oxidation (M)	1568.8345	0.83446158	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	26.836	26.028	3	0.00036368	17752	160511_QHF_FH_JSI10i_3	76.156	60.214			1.1855	1.3326	70.61	4	4	Median	0.48425	0.39371	NaN	1	1	Median	1.1855	1.3326	38.369	2	2	Median	1.854	1.77	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189160000	96164000	93001000	44810000	29360000	15450000	76018000	34539000	41479000	55849000	19777000	36072000	12488000	12488000	0	41231	1436	38806	252397;252398;252399;252400;252401	338600;338601;338602;338603;338604	338601		1099	5	
QIATLHAQVADMKK	2	Unmodified	1552.8395	0.83954696	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.26		3	21						6	12	7	7	4	35.174	32.734	2;3;4	6.2887E-17	28208	160511_QHF_FH_JSI11i_3	210.41	169.91			1.3108	1.4342	112.19	29	27	Median	1.1033	0.93677	111.61	12	12	Median	1.7634	2.1569	111.39	7	5	Median	2.34	2.2116	116.47	6	6	Median	1.0113	1.0374	94.201	4	4	Median	4650400000	1986300000	2664100000	1515100000	802590000	712550000	792990000	343810000	449180000	1819600000	538060000	1281500000	522730000	301880000	220850000	41232	1436	38806	252402;252403;252404;252405;252406;252407;252408;252409;252410;252411;252412;252413;252414;252415;252416;252417;252418;252419;252420;252421;252422;252423;252424;252425;252426;252427;252428;252429;252430;252431	338605;338606;338607;338608;338609;338610;338611;338612;338613;338614;338615;338616;338617;338618;338619;338620;338621;338622;338623;338624;338625;338626;338627;338628;338629;338630;338631;338632;338633;338634;338635	338607			31	
QICLVMLETLSQSPQGR	0	Unmodified	1958.9918	0.99176686	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	3	2	3	94.032	93.258	2;3	1.5719E-50	45467	160513_QHF_FH_JSI10Kac_6	178.23	157.85			1.177	1.1241	30.968	9	2	Median	1.2065	1.0645	NaN	1	0	Median	1.42	1.6733	49.536	3	2	Plateau	1.1432	1.0712	6.8177	2	0	Median	1.2437	1.3421	14.117	3	0	Plateau	388370000	187110000	201260000	27708000	10656000	17052000	155800000	89179000	66624000	63356000	27963000	35393000	141500000	59315000	82189000	41233	2656	38807	252432;252433;252434;252435;252436;252437;252438;252439;252440;252441	338636;338637;338638;338639;338640;338641;338642;338643;338644;338645;338646;338647;338648;338649;338650	338650			14	
QICVVMLESPPK	1	Unmodified	1399.7203	0.72034303	1893	P57721	PCBP3	Poly(rC)-binding protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		67.344	66.902	2	1.8467E-05	58416	160511_QHF_FH_JSI11i_2	129.88	103.36			0.55212	0.60265	17.466	2	2	Median	NaN	NaN	NaN	0	0	Median	0.44469	0.53263	NaN	1	1	Median	0.68551	0.68187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	128640000	83296000	45345000	0	0	0	77851000	53040000	24811000	50791000	30257000	20534000	0	0	0	41234	1893	38808	252442;252443	338651;338652	338652			2	
QIDAPGDPFPLNPR	0	Unmodified	1535.7732	0.77324153	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	69.287	68.546	2	1.2056E-09	60017	160511_QHF_FH_JSI11i_2	144.17	119.38			0.94712	0.93461	19.507	5	4	Median	1.0744	0.93461	NaN	1	1	Median	0.66246	0.80501	26.186	2	2	Median	0.94712	0.92017	NaN	1	0	Median	1.0701	1.1452	NaN	1	1	Median	324250000	163180000	161080000	58016000	27774000	30242000	77486000	42831000	34655000	81837000	44034000	37803000	106910000	48539000	58376000	41235	2795	38809	252444;252445;252446;252447;252448	338653;338654;338655;338656;338657;338658	338656			6	
QIDLSTVDLK	1	Unmodified	1130.6183	0.61830402	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	62.748	62.112	2	3.0381E-05	56137	160511_QHF_FH_JSI10i_1	96.665	55.887			0.87352	0.86578	28.78	5	2	Median	1.1777	0.97311	NaN	1	0	Median	0.65263	0.75887	NaN	1	0	Median	0.87352	0.86578	NaN	1	0	Median	1.0531	1.0793	48.926	2	2	Median	889870000	417310000	472560000	158380000	64321000	94058000	154520000	85318000	69198000	201090000	89877000	111220000	375880000	177800000	198090000	41236	1849	38810	252449;252450;252451;252452;252453;252454	338659;338660;338661;338662;338663;338664;338665	338663			6	
QIDLSTVDLKK	2	Unmodified	1258.7133	0.71326704	1849	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	52.213	51.474	2;3	1.7803E-05	45351	160511_QHF_FH_JSI10i_2	91.62	55.317			1.0029	1.048	14.216	8	2	Median	1.2221	1.0464	NaN	1	0	Median	0.84721	1.0024	1.6645	2	0	Median	1.1711	1.1761	26.279	3	1	Median	1.0029	1.0547	0.69517	2	1	Median	609530000	299670000	309850000	80402000	34329000	46073000	166150000	89872000	76277000	225340000	98475000	126870000	137640000	76998000	60638000	41237	1849	38811	252455;252456;252457;252458;252459;252460;252461;252462	338666;338667;338668;338669;338670;338671;338672;338673;338674;338675;338676;338677	338676			12	
QIDLVDNYFVK	1	Unmodified	1352.6976	0.69761697	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			79.876	79.364	2	0.040989	72021	160511_QHF_FH_JSI10i_1	37.584	18.23			0.69419	0.66814	84.936	2	0	Median	0.44948	0.36647	NaN	1	0	Median	1.0721	1.2181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52744000	19186000	33558000	21458000	10668000	10790000	31286000	8518500	22768000	0	0	0	0	0	0	41238	5461	38812	252463;252464	338678	338678			1	
QIDNPDYK	1	Unmodified	991.46108	0.4610751	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	5.67	4	5	1		1	4	2			4	5	4	4	18.576	14.075	2	4.6567E-11	5506	160513_QHF_FH_JSI9Kac_3	157.91	132.17			1.0635	0.99675	22.442	15	2	Median	1.1101	0.94817	6.9083	3	0	Median	0.80958	0.97916	35.356	5	2	Median	1.0219	0.99675	12.903	3	0	Median	1.1066	1.1991	17.857	4	0	Median	17621000000	8671300000	8949300000	4071200000	1785800000	2285400000	4589500000	2382500000	2207000000	3782100000	1922200000	1859900000	5177700000	2580800000	2597000000	41239	1297	38813	252465;252466;252467;252468;252469;252470;252471;252472;252473;252474;252475;252476;252477;252478;252479;252480;252481	338679;338680;338681;338682;338683;338684;338685;338686;338687;338688;338689;338690;338691;338692;338693;338694;338695;338696;338697;338698;338699;338700;338701;338702;338703;338704;338705;338706;338707;338708	338694			30	
QIDSGSNLTTDLIVQR	0	Unmodified	1758.9112	0.91119158	4270	Q99447	PCYT2	Ethanolamine-phosphate cytidylyltransferase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	65.842	65.211	2	0.00011171	59428	160511_QHF_FH_JSI12i_1	94.059	78.857			0.36007	0.3709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36007	0.3709	NaN	1	1	Median	54205000	35744000	18460000	0	0	0	0	0	0	0	0	0	54205000	35744000	18460000	41240	4270	38814	252482	338709	338709			1	
QIDSSPVGGETDETTVSQNYR	0	Unmodified	2282.0299	0.029862743	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	43.777	43.115	2	1.1321E-69	38714	160511_QHF_FH_JSI10i_1	190.57	150.91			1.0115	1.0639	19.709	4	1	Median	1.7738	1.4787	NaN	1	1	Median	0.88526	0.99744	NaN	1	0	Median	0.97179	0.95379	NaN	1	0	Median	1.0527	1.1348	NaN	1	0	Median	135910000	61800000	74106000	23710000	6636800	17074000	33584000	15169000	18415000	41845000	22505000	19339000	36768000	17490000	19278000	41241	235	38815	252483;252484;252485;252486;252487;252488	338710;338711;338712;338713;338714;338715;338716;338717;338718	338716			9	
QIDSVNHINLFFTELK	1	Unmodified	1916.9996	0.99961265	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.317	91.821	3	6.1112E-06	81345	160511_QHF_FH_JSI10i_2	107.07	94.448			1.021	0.96925	26.575	4	0	Median	0.97606	0.84031	NaN	1	0	Median	0.71575	0.88459	NaN	1	0	Median	1.0681	1.062	NaN	1	0	Median	1.3957	1.5117	NaN	1	0	Median	91092000	47341000	43751000	11839000	5050100	6789100	22341000	15355000	6986300	32137000	14658000	17480000	24774000	12278000	12495000	41242	648	38816	252489;252490;252491;252492	338719;338720;338721;338722;338723;338724;338725;338726	338726			8	
QIEAQQNK	1	Unmodified	957.48796	0.48795855	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	5.7804	5.3836	2	0.0001034	3445	160511_QHF_FH_JSI12i_1	129.39	110.66			0.82199	0.83854	14.769	3	0	Median	1.2132	0.99337	NaN	1	0	Median	0.64799	0.74014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82199	0.83854	NaN	1	0	Median	343730000	186130000	157600000	91996000	40779000	51217000	118710000	72841000	45868000	0	0	0	133030000	72511000	60514000	41243	4753	38817	252493;252494;252495	338727;338728;338729	338727			3	
QIEEFNIGK	1	Unmodified	1076.5502	0.55022446	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		47	46.312	2	0.0078489	41221	160511_QHF_FH_JSI9i_1	52.937	18.684			1.6847	1.6913	2.0592	3	1	Plateau	2.0272	1.6629	NaN	1	0	Median	1.4919	1.7202	NaN	1	0	Median	1.6847	1.6574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	285920000	113300000	172610000	84529000	27196000	57333000	85293000	38123000	47170000	116090000	47984000	68110000	0	0	0	41244	2115	38818	252496;252497;252498	338730;338731;338732	338732			3	
QIEEINEQIRK	1	Unmodified	1398.7467	0.74669243	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		4	2							1		2	3	30.056	29.375	2;3	0.00039285	24849	160511_QHF_FH_JSI11i_2	47.57	32.198			0.71615	0.7059	46.977	6	5	Median	0.90546	0.78449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5223	0.49841	34.291	2	1	Median	1.1251	1.2327	59.167	3	3	Plateau	264680000	145380000	119300000	45387000	28400000	16988000	0	0	0	126450000	67369000	59077000	92846000	49608000	43238000	41245	4282	38819	252499;252500;252501;252502;252503;252504	338733;338734;338735;338736;338737;338738	338737			6	
QIEEQTIK	1	Unmodified	987.52368	0.52367535	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	19.852	16.423	2	0.00063787	14180	160511_QHF_FH_JSI12i_1	109.71	50.733			1.0124	1.0195	11.387	7	0	Median	1.2182	1.0134	NaN	1	0	Median	0.9315	1.0952	10.123	2	0	Median	1.0139	1.0016	9.2735	2	0	Median	0.96804	1.0338	22.373	2	0	Median	1577500000	831800000	745700000	357510000	141570000	215940000	424310000	247490000	176820000	425560000	231640000	193920000	370120000	211110000	159010000	41246	1426	38820	252505;252506;252507;252508;252509;252510;252511	338739;338740;338741;338742;338743;338744	338739			6	
QIEEQTK	1	Unmodified	874.43961	0.43961137	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.14	4	3	2		3	2				2	5	4	3	6.2949	3.4484	2	0.0024681	3364	160511_QHF_FH_JSI9i_1	110.81	12.284			0.90655	0.89261	38.429	14	2	Median	1.0695	0.86925	1.1084	2	0	Median	0.74718	0.87077	55.757	5	2	Median	1.0281	1.0086	26.841	4	0	Median	0.69359	0.75152	19.858	3	0	Plateau	5342500000	2824000000	2518600000	900460000	415630000	484820000	1572900000	845100000	727790000	1401900000	838910000	562980000	1467300000	724340000	742970000	41247	1270	38821	252512;252513;252514;252515;252516;252517;252518;252519;252520;252521;252522;252523;252524;252525	338745;338746;338747;338748;338749;338750;338751;338752;338753;338754;338755;338756;338757;338758;338759;338760;338761;338762	338758			18	
QIEHTLNEK	1	Unmodified	1110.5669	0.56693715	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.72		9	1					1		3	2	3	3	11.146	9.8856	2;3	4.3354E-06	7659	160511_QHF_FH_JSI11i_2	119.68	74.599			0.74952	0.82345	13.851	11	3	Median	0.83647	0.7336	22.049	3	2	Median	0.67835	0.81811	6.9288	2	1	Median	0.8379	0.82345	11.617	3	0	Median	0.74952	0.83255	10.735	3	0	Median	1261600000	693910000	567640000	239720000	137100000	102620000	221050000	111290000	109760000	437450000	237830000	199620000	363330000	207690000	155640000	41248	1215;1121	38822	252526;252527;252528;252529;252530;252531;252532;252533;252534;252535;252536	338763;338764;338765;338766;338767;338768;338769;338770;338771;338772;338773	338768			11	
QIEILELEDLEK	1	Unmodified	1470.7817	0.78174053	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	91.046	90.606	2	9.3289E-06	78177	160511_QHF_FH_JSI12i_2	141.08	105.64			1.0681	1.0786	12.325	7	0	Median	1.101	0.94116	NaN	1	0	Median	0.90397	1.0424	26.863	2	0	Median	1.0907	1.0708	2.6818	2	0	Median	1.0437	1.1013	2.9504	2	0	Median	182870000	100400000	82472000	21249000	11830000	9418300	51678000	30963000	20715000	48239000	27555000	20685000	61704000	30049000	31654000	41249	2303	38823	252537;252538;252539;252540;252541;252542;252543	338774;338775;338776;338777;338778;338779;338780;338781;338782	338778			9	
QIEINTISASFGGLASR	0	Unmodified	1762.9214	0.92136233	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	86.056	85.251	2	5.0989E-08	75055	160511_QHF_FH_JSI11i_2	161.63	100.28			0.86103	0.89675	3.211	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88919	0.87662	NaN	1	0	Median	0.83376	0.91735	NaN	1	1	Median	75824000	38681000	37143000	0	0	0	0	0	0	42285000	17154000	25131000	33539000	21526000	12013000	41250	1629	38824	252544;252545	338783;338784;338785	338785			3	
QIEIQFAQGDRK	1	Unmodified	1431.747	0.74702678	535	O75494;Q8WXF0	SRSF10;SRSF12	Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12	yes	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		42.15	40.63	2;3	0.0021169	35680	160511_QHF_FH_JSI11i_3	66.953	37.997			2.0775	2.4366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0775	2.4366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18464000	7615100	10849000	0	0	0	18464000	7615100	10849000	0	0	0	0	0	0	41251	535	38825	252546;252547	338786;338787	338786			2	
QIENVLR	0	Unmodified	870.49232	0.49231565	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	29.207	28.414	2	0.0068663	24589	160511_QHF_FH_JSI9i_2	89.55	12.492			0.83899	0.87941	14.277	5	0	Median	1.0215	0.87941	NaN	1	0	Median	0.87142	1.0442	19.457	2	0	Median	0.83899	0.84257	NaN	1	0	Median	0.78939	0.87284	NaN	1	0	Median	636060000	334510000	301550000	121660000	51899000	69766000	170990000	99750000	71237000	216970000	114520000	102460000	126440000	68347000	58091000	41252	1169	38826	252548;252549;252550;252551;252552	338788;338789;338790;338791;338792	338790			5	
QIESSDYDSSSSKGKK	3	2 Acetyl (K)	1828.8327	0.83266649	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	12.4	0.93				4	6	7	2				7	4	8	33.103	24.501	2;3	3.9265E-22	11549	160513_QHF_FH_JSI10Kac_2	144.27	128.01			0.97457	1.0431	29.695	18	0	Median	NaN	NaN	NaN	0	0	Median	0.7871	0.91489	27.053	6	0	Median	1.0454	1.0376	9.5475	4	0	Linear	1.0193	1.0829	33.373	8	0	Median	913870000	418580000	495290000	0	0	0	281010000	143540000	137470000	205640000	81970000	123670000	427220000	193070000	234150000	41253	5440	38827	252553;252554;252555;252556;252557;252558;252559;252560;252561;252562;252563;252564;252565;252566;252567;252568;252569;252570;252571	338793;338794;338795;338796;338797;338798;338799;338800;338801;338802;338803;338804;338805;338806;338807;338808;338809;338810;338811;338812;338813;338814;338815;338816;338817;338818;338819;338820	338802	3416;3417;3418		28	
QIESSDYDSSSSKGKKK	4	3 Acetyl (K)	1998.9382	0.93819419	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					6	6					4	4	4	38.191	29.422	2;3	7.931E-43	13993	160513_QHF_FH_JSI12Kac_2	177.84	154.93			0.97682	1.0608	14.432	11	0	Median	NaN	NaN	NaN	0	0	Median	0.83613	0.99657	12.9	3	0	Plateau	1.0043	1.1112	14.709	4	0	Linear	1.0005	1.063	15.614	4	0	Median	126030000	63712000	62316000	0	0	0	38221000	20538000	17683000	27882000	14833000	13049000	59925000	28340000	31585000	41254	5440	38828	252572;252573;252574;252575;252576;252577;252578;252579;252580;252581;252582;252583	338821;338822;338823;338824;338825;338826;338827;338828;338829;338830;338831;338832;338833;338834;338835;338836;338837;338838	338838	3416;3417;3418;3422		18	
QIESSDYDSSSSKGKKKGR	4	4 Acetyl (K)	2254.0713	0.071333627	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	43.477	34.503	3	1.7719E-07	19497	160513_QHF_FH_JSI11Kac_3	89.011	80.517			0.86669	0.97502	23.515	4	0	Median	NaN	NaN	NaN	0	0	Median	0.67996	0.78698	20.858	2	0	Median	1.1865	1.1724	NaN	1	0	Median	0.97361	1.0423	NaN	1	0	Median	27898000	14256000	13641000	0	0	0	9414800	5478000	3936900	8277000	4129900	4147100	10206000	4648500	5557400	41255	5440	38829	252584;252585;252586;252587;252588	338839;338840;338841;338842;338843;338844;338845	338840	3416;3417;3418;3422		7	
QIEYEYK	1	Unmodified	971.46001	0.46001246	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	4.18	4	3					1			2	2	2	2	26.494	24.819	2	0.0079117	22092	160511_QHF_FH_JSI12i_1	89.698	37.911			1.0501	1.0782	12.243	8	0	Median	1.2898	1.0797	3.9578	2	0	Median	0.81151	0.96518	19.436	2	0	Median	0.95238	0.93471	7.2795	2	0	Median	1.0795	1.1602	1.5154	2	0	Median	1564000000	748510000	815530000	339600000	132630000	206980000	430000000	226640000	203360000	356790000	166370000	190410000	437640000	222870000	214780000	41256	1180	38830	252589;252590;252591;252592;252593;252594;252595;252596	338846;338847;338848;338849;338850	338846			5	
QIFAQKLHK	2	Acetyl (K)	1153.6608	0.66077796	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		46.073	36.414	2;3	3.4155E-06	19841	160513_QHF_FH_JSI11Kac_6	111.46	88.136			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17229000	17229000	0	0	0	0	0	0	0	17229000	17229000	0	0	0	0	41257	2789	38831	252597;252598	338851;338852	338851	2687		2	
QIFDEYENETFLCHR	0	Unmodified	1999.8734	0.87342586	5567	Q9Y3A3	MOB4	MOB-like protein phocein	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	66.185	66.038	3	0.0011326	57088	160511_QHF_FH_JSI12i_3	53.565	53.034			1.1043	1.0838	28.077	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94889	0.88863	NaN	1	0	Median	1.2852	1.3218	NaN	1	0	Median	93001000	43867000	49134000	0	0	0	0	0	0	46422000	22688000	23734000	46579000	21180000	25399000	41258	5567	38832	252599;252600	338853	338853			1	
QIFIGPPDIK	1	Unmodified	1126.6386	0.63864553	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	69.038	68.24	2	7.0947E-05	59647	160511_QHF_FH_JSI11i_2	89.029	77.518			0.90415	0.92379	3.5056	5	0	Median	1.0529	0.9087	NaN	1	0	Median	0.71344	0.86302	NaN	1	0	Median	0.94232	0.93911	0.25448	2	0	Median	0.80778	0.92379	NaN	1	0	Median	232970000	115670000	117300000	41545000	17332000	24213000	43186000	23471000	19715000	101260000	49275000	51981000	46981000	25587000	21394000	41259	5640	38833	252601;252602;252603;252604;252605	338854;338855;338856;338857	338856			4	
QIFILLFQR	0	Unmodified	1176.7019	0.70191449	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	3	1	1	96.628	91.009	2	8.6728E-24	47938	160513_QHF_FH_JSI10Kac_6	181.81	162.49			0.96492	0.83893	26.177	7	1	Median	0.91248	0.77251	9.0393	2	0	Median	0.71524	0.83893	36.966	3	1	Median	1.0989	1.0554	NaN	1	0	Median	1.0766	1.1418	NaN	1	0	Median	2305000000	1209200000	1095800000	646910000	351170000	295740000	1045500000	590480000	454980000	285740000	114400000	171350000	326910000	153180000	173720000	41260	1844	38834	252606;252607;252608;252609;252610;252611;252612	338858;338859;338860;338861;338862;338863;338864;338865;338866;338867;338868	338866			11	
QIFIPILQGLALAAK	1	Unmodified	1594.981	0.98104946	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		102.68	102.64	3	2.8557E-08	91792	160511_QHF_FH_JSI11i_3	96.464	84.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41261	647	38835	252613;252614;252615	338869;338870;338871	338869			3	
QIFLGGVDK	1	Unmodified	975.53893	0.53893149	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.18	5	3	5				2	4	1	4	7	4	5	51.579	47.417	1;2	1.6336E-06	43098	160511_QHF_FH_JSI11i_1	131.06	49.278			0.90815	0.94781	24.137	20	6	Median	0.96488	0.77137	8.6805	4	1	Median	0.85275	0.98638	16.335	7	1	Median	0.96826	0.94081	8.2789	4	1	Median	0.86088	0.91194	38.986	5	3	Median	15741000000	7457700000	8283200000	3700200000	1632000000	2068200000	4993500000	2287100000	2706400000	2203400000	1036200000	1167200000	4843700000	2502300000	2341400000	41262	1014;826	38836	252616;252617;252618;252619;252620;252621;252622;252623;252624;252625;252626;252627;252628;252629;252630;252631;252632;252633;252634;252635	338872;338873;338874;338875;338876;338877;338878;338879;338880;338881;338882;338883;338884;338885;338886;338887;338888;338889;338890;338891;338892;338893;338894;338895;338896;338897;338898;338899;338900;338901;338902;338903;338904;338905;338906;338907	338875			35	
QIFLGGVDKHTQFWR	1	Acetyl (K)	1872.9635	0.96350192	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	80.123	71.865	2;3	4.7699E-231	39109	160513_QHF_FH_JSI11Kac_6	332.41	277.06			0.90476	0.96663	23.803	8	0	Median	1.1835	1.0135	4.3578	2	0	Median	0.85351	1.0036	8.6243	2	0	Median	0.65799	0.62307	2.48	2	0	Median	1.003	1.0469	13.624	2	0	Median	5771600000	3151400000	2620200000	791830000	349970000	441870000	2759200000	1489200000	1270100000	1480800000	903310000	577510000	739730000	408950000	330780000	41263	1014	38837	252636;252637;252638;252639;252640;252641;252642;252643	338908;338909;338910;338911;338912;338913;338914;338915;338916;338917;338918	338909	817		11	
QIFLGGVDKR	1	Unmodified	1131.64	0.64004252	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							3	3	4	2	37.68	36.784	2;3	6.8704E-14	29855	160511_QHF_FH_JSI9i_3	155.58	135.88			1.0342	0.9901	74.223	8	1	Median	1.7473	1.453	13.245	2	0	Median	0.29108	0.33388	6.0382	3	0	Plateau	0.73377	0.7409	NaN	1	0	Median	1.566	1.6125	10.539	2	1	Median	1916200000	1034000000	882240000	547370000	174270000	373100000	918900000	679160000	239740000	70596000	46296000	24300000	379340000	134230000	245100000	41264	826	38838	252644;252645;252646;252647;252648;252649;252650;252651;252652;252653;252654;252655	338919;338920;338921;338922;338923;338924;338925;338926;338927;338928;338929;338930;338931;338932;338933;338934	338927			16	
QIFLGGVDKR	1	Acetyl (K)	1173.6506	0.6506072	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.78						1	3	10	4	3	5	4	6	64.629	54.293	2;3	1.2376E-43	28218	160513_QHF_FH_JSI12Kac_6	214.71	168.37			0.93417	0.9844	148.81	18	2	Median	1.0781	0.91878	12.765	3	0	Plateau	0.82997	0.9906	20.2	5	0	Median	0.7411	0.72135	57.588	4	0	Median	0.93417	0.99955	241.19	6	2	Median	1577600000	908980000	668630000	220390000	105650000	114740000	498950000	283790000	215160000	397480000	239700000	157790000	460800000	279840000	180950000	41265	826	38838	252656;252657;252658;252659;252660;252661;252662;252663;252664;252665;252666;252667;252668;252669;252670;252671;252672;252673	338935;338936;338937;338938;338939;338940;338941;338942;338943;338944;338945;338946;338947;338948;338949;338950;338951;338952;338953;338954;338955	338953	477		21	
QIFNGTFVK	1	Unmodified	1052.5655	0.56548059	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	6.21	3	4	4				1	4	1	3	4	5	5	54.857	50.611	2	2.3972E-08	43280	160511_QHF_FH_JSI12i_3	150.05	113.87			1.0498	1.0317	26.679	17	1	Median	1.2713	1.0436	4.8343	3	0	Median	0.83722	0.99703	11.106	4	0	Median	1.1806	1.1137	44.827	5	1	Median	0.92373	1.0014	16.945	5	0	Median	11110000000	5622400000	5487700000	1615000000	688400000	926600000	2080900000	1164200000	916680000	4112400000	2020100000	2092300000	3301700000	1749700000	1552100000	41266	1138	38839	252674;252675;252676;252677;252678;252679;252680;252681;252682;252683;252684;252685;252686;252687;252688;252689;252690	338956;338957;338958;338959;338960;338961;338962;338963;338964;338965;338966;338967;338968;338969;338970;338971;338972;338973;338974;338975;338976;338977;338978;338979;338980;338981;338982;338983;338984;338985;338986;338987;338988;338989;338990	338990			35	
QIFNGTFVKLNK	2	Acetyl (K)	1449.798	0.79799972	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.275	67.957	2	7.3833E-06	37107	160513_QHF_FH_JSI11Kac_6	103.69	78.027			0.48789	0.4816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48789	0.4816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38504000	29650000	8853700	0	0	0	0	0	0	38504000	29650000	8853700	0	0	0	41267	1138	38840	252691	338991;338992	338991	994		2	
QIFSLIIPGHINCIR	0	Unmodified	1779.9818	0.98179452	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			98.635	98.515	3	0.057507	86527	160511_QHF_FH_JSI9i_2	17.917	7.5425			0.70949	0.7366	17.018	2	0	Median	0.73987	0.65308	NaN	1	0	Median	0.68036	0.83079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39328000	20625000	18703000	16529000	7981800	8547100	22799000	12643000	10156000	0	0	0	0	0	0	41268	1251	38841	252692;252693	338993;338994	338993			2	
QIGAFSEGINNLTHMLK	1	Unmodified	1871.9564	0.95636763	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		92.516	91.834	3	1.0332E-06	76651	160511_QHF_FH_JSI10i_3	109.36	93.477			0.68339	0.78309	21.989	3	0	Plateau	0.93782	0.78309	NaN	1	0	Median	0.81301	0.94882	NaN	1	0	Median	0.67087	0.6119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	124690000	68573000	56117000	16044000	9038100	7005600	37559000	18662000	18897000	71088000	40873000	30215000	0	0	0	41269	3353	38842	252694;252695;252696	338995;338996;338997;338998	338996			4	
QIGDALR	0	Unmodified	771.4239	0.42390173	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By matching			2	0		2								1	1			20.492	19.617	2	0.017953	16676	160511_QHF_FH_JSI9i_2	60.682	14.666			1.0286	1.0336	3.9959	2	0	Median	1.1931	1.0048	NaN	1	0	Median	0.88672	1.0632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184780000	91205000	93579000	93256000	42599000	50658000	91528000	48606000	42922000	0	0	0	0	0	0	41270	1659	38843	252697;252698	338999	338999			1	
QIGENLIVPGGVK	1	Unmodified	1322.7558	0.75580056	2739	Q16555;Q14194	DPYSL2;CRMP1	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	2	3	62.373	61.653	2	5.9985E-22	56007	160511_QHF_FH_JSI11i_1	170.89	115.91			0.91452	0.9242	15.467	10	8	Median	1.0918	0.9242	2.8448	2	1	Median	0.61469	0.75435	18.861	3	3	Plateau	0.83892	0.83469	8.9713	2	1	Median	1.0092	1.1083	10.747	3	3	Median	1002200000	544970000	457250000	150920000	69170000	81751000	323920000	186460000	137460000	262410000	154100000	108310000	264960000	135240000	129720000	41271	2739	38844	252699;252700;252701;252702;252703;252704;252705;252706;252707;252708	339000;339001;339002;339003;339004;339005;339006;339007;339008;339009;339010;339011;339012	339001			13	
QIGGGIQSITYTHNGDISR	0	Unmodified	2016.0025	0.0024662011	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			49.61	48.042	3	0.0092483	40207	160511_QHF_FH_JSI10i_3	37.999	34.61			0.28971	0.33834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28971	0.33834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25220000	18740000	6480000	0	0	0	25220000	18740000	6480000	0	0	0	0	0	0	41272	128	38845	252709	339013	339013			1	
QIGIIKTNK	2	Acetyl (K)	1055.6339	0.63389451	1442;3889	P35637;Q92804	FUS;TAF15	RNA-binding protein FUS;TATA-binding protein-associated factor 2N	no	no	1	0	0	1			By MS/MS		14	0							1					1		48.492	37.977	2	0.020335	22451	160513_QHF_FH_JSI11Kac_4	53.751	24.59			0.39526	0.39611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39526	0.39611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3737100	2817800	919280	0	0	0	0	0	0	3737100	2817800	919280	0	0	0	41273	1442;3889	38846	252710	339014	339014	1423		1	
QIGLDQIWDDLR	0	Unmodified	1470.7467	0.74669243	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		100.31	100.16	2	0.00089539	87921	160511_QHF_FH_JSI11i_2	77.674	56.302			1.4224	1.4315	33.944	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4224	1.4315	33.944	2	2	Median	NaN	NaN	NaN	0	0	Median	57917000	24020000	33897000	0	0	0	0	0	0	57917000	24020000	33897000	0	0	0	41274	2453	38847	252711;252712	339015;339016	339016			2	
QIGNVAALPGIVHR	0	Unmodified	1443.831	0.83103118	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.62	0.484		3	5							4	3	1		59.994	58.875	2;3	2.2655E-21	49334	160511_QHF_FH_JSI10i_3	180.67	154.16			0.80354	0.88537	13.766	8	1	Median	1.071	0.90076	18.662	4	0	Median	0.76338	0.8901	3.51	3	0	Median	0.80822	0.75148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1053100000	578130000	474960000	446110000	200860000	245250000	521240000	327130000	194100000	85744000	50136000	35608000	0	0	0	41275	5596	38848	252713;252714;252715;252716;252717;252718;252719;252720	339017;339018;339019;339020;339021;339022;339023;339024;339025;339026;339027;339028;339029;339030;339031	339019			14	
QIGTLLAELR	0	Unmodified	1112.6554	0.65535823	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	75.638	74.788	2	2.409E-05	64868	160511_QHF_FH_JSI12i_3	107.11	54.177			0.29291	0.31666	0.72808	2	2	Median	NaN	NaN	NaN	0	0	Median	0.27466	0.31829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.31237	0.31503	NaN	1	1	Median	149990000	100710000	49281000	0	0	0	69606000	48788000	20817000	0	0	0	80381000	51917000	28463000	41276	3290	38849	252721;252722	339032;339033	339033			2	
QIGVEHVVVYVNK	1	Unmodified	1482.8195	0.81946344	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.52		8	4					8	9	10	7	6	6	56.712	50.714	2;3	1.3475E-30	44626	160511_QHF_FH_JSI10i_2	188.28	156.85			0.90737	0.90702	19.423	25	5	Median	0.95161	0.80635	14.888	9	2	Median	0.7421	0.90823	8.7003	5	1	Median	0.88719	0.90702	10.814	5	1	Median	1.0016	1.1304	18.044	6	1	Median	4979500000	2627300000	2352200000	1049600000	550430000	499190000	1617400000	894220000	723160000	1415800000	712280000	703560000	896640000	470400000	426240000	41277	1658	38850	252723;252724;252725;252726;252727;252728;252729;252730;252731;252732;252733;252734;252735;252736;252737;252738;252739;252740;252741;252742;252743;252744;252745;252746;252747;252748;252749;252750;252751	339034;339035;339036;339037;339038;339039;339040;339041;339042;339043;339044;339045;339046;339047;339048;339049;339050;339051;339052;339053;339054;339055;339056;339057;339058;339059;339060;339061;339062;339063;339064;339065;339066;339067;339068;339069;339070;339071;339072;339073;339074	339057			39	
QIGYDVLAEDTITALLHNNRK	1	Unmodified	2383.2496	0.24957276	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.09	101.09	4	7.9735E-11	90094	160511_QHF_FH_JSI11i_3	112.58	92.143			0.97115	0.93094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97115	0.93094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	244000000	121530000	122470000	0	0	0	0	0	0	244000000	121530000	122470000	0	0	0	41278	2549	38851	252752	339075;339076	339076			2	
QIHIDIPR	0	Unmodified	990.56106	0.56106391	3757	Q9NU19;Q8WUA7	TBC1D22B;TBC1D22A	TBC1 domain family member 22B;TBC1 domain family member 22A	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	44.911	44.125	3	0.0012015	38866	160511_QHF_FH_JSI10i_2	66.692	45.745			1.2147	1.3032	10.961	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0397	1.2371	NaN	1	0	Median	1.4191	1.3561	NaN	1	0	Median	1.0243	1.0901	NaN	1	0	Median	49284000	26214000	23070000	0	0	0	18007000	9913600	8093100	18359000	8271900	10088000	12918000	8028400	4889600	41279	3757	38852	252753;252754;252755;252756	339077;339078;339079;339080;339081;339082	339081			6	
QIHKFEELNR	1	Acetyl (K)	1354.6993	0.69934831	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	46.035	36.738	2	4.0219E-06	20093	160513_QHF_FH_JSI11Kac_6	120.68	91.596			0.64739	0.70728	45.486	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81931	0.97646	NaN	1	0	Median	0.41513	0.39783	NaN	1	0	Median	0.64739	0.70728	NaN	1	0	Median	23010000	14494000	8516500	0	0	0	8385300	4966400	3418900	10683000	7457400	3225200	3942300	2069900	1872400	41280	5494	38853	252757;252758;252759	339083;339084;339085;339086;339087;339088	339084	3453		6	
QIHLMNSFGFPQYVK	1	Unmodified	1807.908	0.90796088	394	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	80.455	79.935	3	2.3376E-05	69302	160511_QHF_FH_JSI12i_3	105.19	91.536			1.4586	1.4695	25.014	3	2	Median	NaN	NaN	NaN	0	0	Median	1.775	2.0187	NaN	1	1	Median	1.2907	1.2323	NaN	1	1	Median	1.4586	1.4695	NaN	1	0	Median	236800000	100340000	136460000	0	0	0	34515000	10777000	23738000	81524000	37494000	44029000	120760000	52069000	68691000	41281	394	38854	252760;252761;252762	339089;339090;339091;339092	339092			4	
QIHQIAQK	1	Unmodified	964.54541	0.54541385	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	7.4924	7.5575	2;3	0.0012908	4964	160511_QHF_FH_JSI12i_3	107.59	54.957			0.51222	0.48657	100.77	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51222	0.48657	NaN	1	1	Median	1.1468	1.1522	123.91	2	2	Median	343630000	150610000	193020000	0	0	0	0	0	0	56551000	29345000	27207000	287070000	121270000	165810000	41282	264	38855	252763;252764;252765	339093;339094;339095	339094			3	
QIHQQLYDR	0	Unmodified	1199.6047	0.60471964	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	14.686	14.718	3	0.0020538	11607	160511_QHF_FH_JSI12i_3	43.958	36.679			1.1185	1.0953	4.2423	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1989	1.1287	NaN	1	0	Median	1.0434	1.0629	NaN	1	0	Median	156360000	73653000	82712000	0	0	0	0	0	0	59436000	26780000	32655000	96929000	46872000	50056000	41283	4424	38856	252766;252767	339096	339096			1	
QIHVIDMDTIDVSNLNR	0	Unmodified	1981.9891	0.98912432	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.149	75.006	3	4.893E-08	65101	160511_QHF_FH_JSI12i_3	96.666	90.392			2.108	2.0977	8.7033	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1397	1.9725	NaN	1	1	Median	2.0768	2.2309	NaN	1	1	Median	61155000	19242000	41913000	0	0	0	0	0	0	41003000	12882000	28121000	20152000	6360500	13791000	41284	3695	38857	252768;252769	339097;339098	339098			2	
QIIEEQSGSYIWVPAK	1	Unmodified	1846.9465	0.94651445	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.657	71.372	2	7.8639E-05	61577	160511_QHF_FH_JSI12i_2	100.55	74.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4489800	4489800	0	0	0	0	0	0	0	0	0	0	4489800	4489800	0	41285	2330	38858	252770	339099	339099			1	
QIIFSSLFSPQGNK	1	Unmodified	1564.8249	0.82494275	4179	Q96N11	C7orf26	Uncharacterized protein C7orf26	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			88.75	87.619	2	3.6301E-05	73291	160511_QHF_FH_JSI10i_3	79.741	54.082			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41286	4179	38859	252771;252772;252773	339100;339101;339102	339101			3	
QIIGPFQR	0	Unmodified	957.5396	0.53960019	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			45.423	44.368	2	0.0016477	37193	160511_QHF_FH_JSI10i_3	83.377	44.558			0.34099	0.30034	NaN	1	1	Median	0.34099	0.30034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127690000	104870000	22820000	127690000	104870000	22820000	0	0	0	0	0	0	0	0	0	41287	2560	38860	252774;252775	339103;339104;339105	339103			3	
QIIGQAK	1	Unmodified	756.44939	0.4493882	143	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	11.494	10.993	2	0.009255	8336	160511_QHF_FH_JSI11i_2	79.939	22.837			0.99541	0.97848	9.7588	6	0	Median	1.131	0.94654	20.711	2	0	Median	0.80192	0.9758	NaN	1	0	Median	1.0094	1.0046	3.3322	2	0	Median	0.8655	0.96632	NaN	1	0	Median	1595700000	782960000	812720000	438560000	186420000	252140000	245700000	145370000	100320000	551150000	274270000	276880000	360270000	176900000	183380000	41288	143	38861	252776;252777;252778;252779;252780;252781	339106;339107;339108;339109;339110;339111;339112	339110			7	
QIIPMVTELIGR	0	Unmodified	1368.7799	0.77990682	4407	Q9BT17	MTG1	Mitochondrial ribosome-associated GTPase 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2.67	0.471		1	2								1	1	1	98.079	98.088	2	0.01418	86970	160511_QHF_FH_JSI10i_2	45.137	16.05			1.2419	1.2656	24.213	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5541	1.5019	NaN	1	0	Median	0.99244	1.0664	NaN	1	0	Median	21007000	10252000	10755000	0	0	0	0	0	0	9184700	4940300	4244400	11823000	5311700	6510900	41289	4407	38862	252782;252783;252784	339113;339114	339113			2	
QIIQQNPSLLPALLQQIGR	0	Unmodified	2129.2321	0.23207221	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.66	101.47	3	6.9473E-11	82383	160511_QHF_FH_JSI9i_3	128.59	112.61			1.1096	0.90162	NaN	1	0	Median	1.1096	0.90162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133260000	63620000	69635000	133260000	63620000	69635000	0	0	0	0	0	0	0	0	0	41290	1831	38863	252785	339115	339115			1	
QIITFFSPLTILVGPNGAGK	1	Unmodified	2072.167	0.16701233	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			7						3	2	3	3	2	101.34	98.611	2;3	5.3063E-104	54115	160513_QHF_FH_JSI10Kac_6	237.46	201.05			0.95924	0.96635	18.949	9	6	Median	1.1375	0.96635	NaN	1	1	Median	0.79524	0.95441	12.79	3	1	Plateau	0.95924	0.91809	30.769	3	2	Median	0.87263	0.87289	14.942	2	2	Median	814620000	391660000	422960000	97904000	40196000	57708000	152000000	86417000	65585000	330650000	149160000	181490000	234070000	115890000	118170000	41291	3896	38864	252786;252787;252788;252789;252790;252791;252792;252793;252794;252795	339116;339117;339118;339119;339120;339121;339122;339123;339124;339125;339126;339127	339127			12	
QILDEAGK	1	Unmodified	872.46035	0.46034682	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			2	1	3	2	19.861	17.909	2	0.00089001	15541	160511_QHF_FH_JSI12i_1	89.046	25.759			0.9064	0.85844	28.712	5	4	Median	1.0335	0.85844	NaN	1	1	Median	0.62262	0.72894	NaN	1	1	Median	0.78489	0.76115	22.691	2	1	Median	1.3277	1.3773	NaN	1	1	Median	1503500000	687370000	816110000	326650000	129670000	196980000	350140000	178820000	171320000	333160000	138610000	194550000	493530000	240270000	253260000	41292	1139	38865	252796;252797;252798;252799;252800;252801;252802;252803	339128;339129;339130;339131;339132;339133;339134;339135	339131			8	
QILDSAASLTGSK	1	Unmodified	1289.6827	0.68269519	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5.33	6.13	2						1			1		2		52.67	46.584	2	1.4451E-09	42473	160511_QHF_FH_JSI11i_1	110.31	81.144			0.85086	0.77258	40.622	2	1	Median	0.70486	0.57969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0271	1.0297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75433000	50967000	24466000	71624000	48714000	22910000	0	0	0	3809400	2252700	1556800	0	0	0	41293	1576	38866	252804;252805;252806	339136;339137;339138	339136			3	
QILEDAAALIIHHVK	1	Unmodified	1669.9515	0.95154025	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	87.667	87.601	4	2.4347E-05	76060	160511_QHF_FH_JSI12i_3	99.481	96.918			1.099	1.0638	18.975	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0308	0.93021	NaN	1	0	Median	1.1716	1.2165	NaN	1	0	Median	72261000	38793000	33469000	0	0	0	0	0	0	33584000	22082000	11502000	38677000	16710000	21966000	41294	4247	38867	252807;252808	339139;339140;339141;339142;339143	339142			5	
QILENELQIPVSK	1	Unmodified	1509.8403	0.84025847	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	70.465	69.746	2	3.4063E-22	63407	160511_QHF_FH_JSI11i_1	176.32	157.08			0.95769	1.0242	19.719	8	0	Median	1.4673	1.252	23.074	2	0	Median	0.95769	1.1421	2.4024	2	0	Median	0.8869	0.86179	19.089	2	0	Median	0.88033	0.93354	4.104	2	0	Median	502500000	260720000	241780000	105690000	52112000	53576000	122120000	65419000	56701000	154280000	75313000	78968000	120410000	67881000	52534000	41295	5442	38868	252809;252810;252811;252812;252813;252814;252815;252816	339144;339145;339146;339147;339148;339149;339150;339151;339152;339153;339154;339155;339156;339157	339145			14	
QILGVIDK	1	Unmodified	884.53312	0.53311783	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.84	4	4	1				3	1		3	3	3	4	50.225	46.294	2	0.0014229	39733	160511_QHF_FH_JSI12i_2	89.698	51.971			0.96743	0.99386	19.222	13	0	Median	1.06	0.87179	10.919	3	0	Median	0.94648	1.1598	37.465	3	0	Plateau	1.0683	1.091	7.3747	3	0	Plateau	0.91315	0.99286	2.5764	4	0	Median	2088100000	1015400000	1072700000	393630000	173690000	219940000	483480000	270010000	213460000	711830000	320680000	391150000	499130000	250980000	248160000	41296	2536	38869	252817;252818;252819;252820;252821;252822;252823;252824;252825;252826;252827;252828;252829	339158;339159;339160;339161;339162;339163;339164;339165;339166;339167;339168;339169;339170;339171	339160			13	
QILGVIDKK	2	Unmodified	1012.6281	0.62808085	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	34.919	34.791	2;3	0.0035726	29366	160511_QHF_FH_JSI12i_3	67.993	35.152			0.43874	0.44464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43874	0.44464	NaN	1	1	Median	75413000	48736000	26676000	0	0	0	0	0	0	0	0	0	75413000	48736000	26676000	41297	2536	38870	252830;252831	339172;339173	339173			2	
QILLGPNTGLSGGMPGALPSLPGKI	1	Unmodified	2387.3247	0.32465196	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	101.34	101.34	3	1.3683E-08	90372	160511_QHF_FH_JSI11i_3	80.102	74.975			1.8628	1.8159	63.739	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2199	1.1571	NaN	1	1	Median	2.8444	2.85	NaN	1	1	Median	255260000	88920000	166340000	0	0	0	0	0	0	130920000	60214000	70704000	124340000	28706000	95638000	41298	4978	38871	252832;252833	339174;339175	339174			2	
QILLPFR	0	Unmodified	885.54362	0.54362294	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							3	2	2	2	69.823	68.97	2	0.0015664	60259	160511_QHF_FH_JSI11i_2	119.22	85.483			1.1499	1.0397	24.338	9	0	Median	1.1499	1.0397	27.58	3	0	Plateau	0.80977	0.96833	22.972	2	0	Median	0.96615	0.93796	23.751	2	0	Median	1.0763	1.1363	31.598	2	0	Median	418450000	201620000	216830000	116620000	48543000	68078000	75056000	44617000	30439000	119460000	57586000	61873000	107320000	50872000	56444000	41299	2185	38872	252834;252835;252836;252837;252838;252839;252840;252841;252842	339176;339177;339178;339179;339180;339181;339182;339183;339184;339185;339186;339187	339184			12	
QILLPFRK	1	Unmodified	1013.6386	0.63858595	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	1		By MS/MS			3	0			1								1			54.847	53.295	3	0.053351	44560	160511_QHF_FH_JSI10i_3	24.155	16.23			2.2393	2.7133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2393	2.7133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5431300	1263400	4167900	0	0	0	5431300	1263400	4167900	0	0	0	0	0	0	41300	2185	38873	252843	339188	339188			1	
QILLYSATFPLSVQK	1	Unmodified	1706.9607	0.96070795	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.96	4	8	1					1	8	5	6	7	4	93.357	90.178	2;3	7.1451E-206	44027	160513_QHF_FH_JSI11Kac_6	325.93	242.06			0.96985	0.93911	17.127	20	2	Median	0.99094	0.87098	4.7196	4	0	Median	0.64946	0.79526	24.397	6	2	Median	1.0951	1.0645	5.597	6	0	Median	0.88997	0.95564	4.9577	4	0	Median	2385500000	1233500000	1152000000	720840000	336190000	384650000	332100000	216740000	115360000	893560000	454360000	439210000	438960000	226170000	212790000	41301	1271	38874	252844;252845;252846;252847;252848;252849;252850;252851;252852;252853;252854;252855;252856;252857;252858;252859;252860;252861;252862;252863;252864;252865	339189;339190;339191;339192;339193;339194;339195;339196;339197;339198;339199;339200;339201;339202;339203;339204;339205;339206;339207;339208;339209;339210;339211;339212;339213;339214	339194			25	
QILMASGSTTFTK	1	Unmodified	1383.7068	0.70680145	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.29	3	4	6					2	4	6	5	5	3	55.681	52.094	2	1.0362E-08	28707	160513_QHF_FH_JSI10Kac_6	117.67	89.931			0.64597	0.73171	20.224	12	4	Median	0.90096	0.76759	33.086	2	1	Median	0.62606	0.74964	5.4178	3	0	Median	0.61459	0.61781	23.597	5	2	Median	0.62713	0.66215	19.737	2	1	Median	796500000	471100000	325410000	140040000	83549000	56492000	201810000	117590000	84216000	245090000	143510000	101580000	209560000	126440000	83118000	41302	3101	38875	252866;252867;252868;252869;252870;252871;252872;252873;252874;252875;252876;252877;252878;252879;252880;252881;252882;252883;252884	339215;339216;339217;339218;339219;339220;339221;339222;339223;339224;339225;339226;339227;339228;339229;339230;339231;339232;339233;339234;339235;339236;339237;339238;339239	339239			25	
QILMASGSTTFTK	1	Oxidation (M)	1399.7017	0.70171607	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0	By MS/MS				15	0								2		2				51.687	41.194	2	0.0086613	22073	160513_QHF_FH_JSI9Kac_5	50.284	29.413			1.0575	0.88941	33.061	2	0	Median	1.0575	0.88941	33.061	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3759300	1762500	1996700	3759300	1762500	1996700	0	0	0	0	0	0	0	0	0	41303	3101	38875	252885;252886	339240;339241	339240		2197	2	
QILQEEGPTAFWK	1	Unmodified	1545.7827	0.78274359	4847	Q9HC21	SLC25A19	Mitochondrial thiamine pyrophosphate carrier	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.387	72.762	2	4.6435E-05	63804	160511_QHF_FH_JSI11i_2	78.342	62.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41304	4847	38876	252887	339242	339242			1	
QILSADDK	1	Unmodified	888.45526	0.45526144	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3					2	2	3	19.098	15.768	2	0.00084694	13605	160511_QHF_FH_JSI10i_1	97.431	30.396			0.96679	1.0287	15.975	7	1	Median	NaN	NaN	NaN	0	0	Median	0.87631	1.0342	16.586	2	0	Median	1.0903	1.0582	0.75951	2	0	Median	0.70646	0.73012	17.346	3	1	Plateau	2122900000	1153700000	969220000	0	0	0	721020000	407560000	313460000	748650000	378380000	370280000	653230000	367750000	285480000	41305	5595	38877	252888;252889;252890;252891;252892;252893;252894	339243;339244;339245;339246;339247;339248	339246			6	
QILSADDKTVR	1	Acetyl (K)	1286.683	0.68302954	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		46.28	35.915	2	0.019285	21402	160513_QHF_FH_JSI11Kac_4	59.426	22.235			0.0354	0.032697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0354	0.032697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1359000	1312400	46661	0	0	0	0	0	0	1359000	1312400	46661	0	0	0	41306	5595	38878	252895	339249	339249	3494		1	
QILSLNYDDSTAAGRK	1	Unmodified	1750.885	0.88497683	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.048	47.048	3	3.0515E-06	41564	160511_QHF_FH_JSI11i_3	93.226	65.459			1.3298	1.2178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3298	1.2178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91271000	35138000	56133000	0	0	0	0	0	0	91271000	35138000	56133000	0	0	0	41307	2302	38879	252896	339250	339250			1	
QILSNPK	1	Unmodified	798.45995	0.45995289	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		15.235	14.526	2	0.010321	11574	160511_QHF_FH_JSI11i_2	65.803	34.514			0.99198	1.0219	51.113	2	2	Median	1.7142	1.4668	NaN	1	1	Median	0.57405	0.71193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156460000	76587000	79872000	87136000	37602000	49535000	69322000	38985000	30337000	0	0	0	0	0	0	41308	4518	38880	252897;252898;252899	339251;339252;339253	339252			3	
QILVGDIGDTVEDPYTSFVK	1	Unmodified	2195.0998	0.099780209	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	97.792	97.612	2;3	9.4268E-100	88567	160511_QHF_FH_JSI11i_1	262.23	240.67			0.83616	0.84605	12.039	8	2	Median	0.87353	0.71281	12.632	2	1	Median	0.76247	0.89413	12.113	2	0	Median	0.94332	0.87856	2.7941	2	0	Median	0.83253	0.86426	5.5512	2	1	Median	475200000	249020000	226180000	49518000	29510000	20008000	145600000	70000000	75604000	135660000	72775000	62881000	144420000	76733000	67689000	41309	5500	38881	252900;252901;252902;252903;252904;252905;252906;252907	339254;339255;339256;339257;339258;339259;339260;339261;339262;339263;339264;339265;339266;339267;339268;339269;339270;339271	339256			18	
QIMENAEINNIIK	1	Unmodified	1528.7919	0.79192807	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	67.342	66.362	2	6.3884E-16	57955	160511_QHF_FH_JSI11i_2	167.18	126.45			1.0218	1.1157	27.104	5	3	Median	0.98423	0.86813	NaN	1	0	Median	0.7	0.86393	NaN	1	1	Median	1.5905	1.5703	NaN	1	0	Median	1.1481	1.2468	15.706	2	2	Median	230950000	120090000	110860000	27559000	12522000	15037000	24736000	14750000	9986100	65533000	34777000	30756000	113120000	58037000	55080000	41310	999;2197	38882	252908;252909;252910;252911;252912	339272;339273;339274;339275;339276;339277;339278	339277			7	
QIMWFWQFVK	1	Unmodified	1411.7111	0.71109897	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			96.231	88.838	2	4.5059E-44	52239	160513_QHF_FH_JSI10Kac_6	209.11	162.72			0.93019	0.9482	12.723	2	0	Median	0.99832	0.86662	NaN	1	0	Median	0.8667	1.0375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	561700000	299110000	262590000	248930000	137160000	111780000	312770000	161950000	150810000	0	0	0	0	0	0	41311	4133	38883	252913;252914	339279;339280	339280			2	
QIMWFWQFVK	1	Oxidation (M)	1427.706	0.70601359	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			92.991	85.702	2	1.5848E-06	49783	160513_QHF_FH_JSI10Kac_6	123.92	105.6			1.0861	1.2529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0861	1.2529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81667000	51307000	30360000	24173000	24173000	0	57494000	27134000	30360000	0	0	0	0	0	0	41312	4133	38883	252915;252916	339281;339282;339283	339282		2396	3	
QINDIQLSR	0	Unmodified	1085.5829	0.58292157	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	3	2	35.083	34.378	2	1.3648E-05	30693	160511_QHF_FH_JSI10i_1	109.88	19.116			0.72394	0.84743	31.599	7	3	Median	0.63814	0.5425	NaN	1	1	Median	0.66986	0.80343	9.4861	2	1	Median	0.75867	0.74954	17.36	2	1	Median	1.1484	1.2217	24.139	2	0	Median	1252000000	680400000	571550000	116100000	60820000	55280000	376970000	221620000	155360000	456340000	246010000	210340000	302530000	151960000	150570000	41313	2391	38884	252917;252918;252919;252920;252921;252922;252923;252924	339284;339285;339286;339287;339288;339289;339290;339291;339292;339293;339294	339290			11	
QINELENGGEILNETR	0	Unmodified	1827.8963	0.8962698	577	O75879	GATB	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.699	59.595	2	0.00013004	52862	160511_QHF_FH_JSI9i_1	91.914	68.678			2.3659	1.9234	NaN	1	1	Median	2.3659	1.9234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21072000	2867700	18205000	21072000	2867700	18205000	0	0	0	0	0	0	0	0	0	41314	577	38885	252925	339295	339295			1	
QINIHNLSAFYDSELFR	0	Unmodified	2066.0221	0.022139011	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	94.804	94.564	2;3	3.2909E-16	84143	160511_QHF_FH_JSI11i_3	161.32	152.5			1.025	1.0632	11.072	7	0	Median	1.4979	1.271	NaN	1	0	Median	0.82813	0.9861	10.653	2	0	Median	1.0352	1.0052	7.289	2	0	Median	1.0724	1.1224	3.9963	2	0	Median	831340000	424240000	407100000	52208000	22738000	29470000	74755000	39886000	34870000	363400000	188590000	174820000	340980000	173030000	167950000	41315	1674	38886	252926;252927;252928;252929;252930;252931;252932;252933	339296;339297;339298;339299;339300;339301;339302;339303	339296			8	
QININNPFVFK	1	Unmodified	1332.719	0.71902112	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.683	80.907	2	2.6422E-07	71976	160511_QHF_FH_JSI10i_2	121.05	69.982			0.86481	0.81871	18.387	4	1	Median	0.8881	0.79092	NaN	1	0	Median	0.61897	0.75869	NaN	1	0	Median	0.84214	0.84747	NaN	1	0	Median	1.0533	1.1398	NaN	1	1	Median	196190000	105470000	90718000	36536000	17140000	19396000	45348000	27483000	17864000	74598000	40001000	34597000	39704000	20843000	18861000	41316	5366	38887	252934;252935;252936;252937	339304;339305;339306;339307	339307			4	
QINLQKQPK	2	Acetyl (K)	1137.6506	0.6506072	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		39.824	30.051	2	0.026039	18287	160513_QHF_FH_JSI11Kac_4	49.097	24.321			0.55661	0.5371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55661	0.5371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2778100	1899800	878290	0	0	0	0	0	0	2778100	1899800	878290	0	0	0	41317	2366	38888	252938	339308	339308	2439		1	
QINLSNIR	0	Unmodified	956.54033	0.54032847	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	38.878	38.562	2	0.0018145	32823	160511_QHF_FH_JSI12i_3	97.093	75.793			0.75963	0.76182	85.974	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3847	1.3992	NaN	1	1	Median	0.41671	0.41479	NaN	1	1	Median	2358200000	1613900000	744290000	0	0	0	0	0	0	875640000	350510000	525130000	1482600000	1263400000	219150000	41318	3213	38889	252939;252940	339309;339310	339310			2	
QINQEYLISQVEGHQVSLK	1	Unmodified	2212.1488	0.14879609	5579	Q9Y3C4	TPRKB	EKC/KEOPS complex subunit TPRKB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	77.529	76.724	3	1.3658E-08	66633	160511_QHF_FH_JSI12i_3	109.65	76.961			0.88063	0.91709	14.282	6	4	Median	1.0889	0.93536	NaN	1	0	Median	0.7231	0.87631	NaN	1	1	Median	0.84143	0.84181	NaN	1	1	Median	0.898	0.98263	17.184	3	2	Median	306240000	157550000	148690000	55808000	28062000	27746000	49180000	30377000	18803000	45549000	25875000	19674000	155700000	73234000	82465000	41319	5579	38890	252941;252942;252943;252944;252945;252946	339311;339312;339313;339314;339315;339316;339317	339317			7	
QINTLSHGEVVCAVTISNPTR	0	Unmodified	2295.1641	0.16412858	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	58.552	58.29	3	3.369E-05	50127	160511_QHF_FH_JSI12i_3	62.19	52.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41320	2220	38891	252947	339318	339318			1	
QINVSTDDSEVK	1	Unmodified	1333.6361	0.63613893	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	31.583	28.269	2	1.3218E-10	25508	160511_QHF_FH_JSI12i_1	141.88	108.79			1.0098	0.99018	12.762	6	0	Median	1.0533	0.85477	NaN	1	0	Median	0.95567	1.1125	NaN	1	0	Median	1.018	0.99018	6.7643	2	0	Median	0.90551	0.96159	20.313	2	0	Median	358690000	178980000	179710000	82342000	35388000	46953000	105140000	54011000	51133000	79319000	42764000	36555000	91886000	46818000	45068000	41321	308	38892	252948;252949;252950;252951;252952;252953	339319;339320;339321;339322;339323;339324;339325;339326;339327	339322			9	
QINWTVLYR	0	Unmodified	1191.64	0.64004252	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	74.918	71.009	2	3.4806E-56	38438	160513_QHF_FH_JSI10Kac_6	228.39	199.02			0.98647	0.98668	14.687	13	0	Median	1.2965	1.1043	14.528	4	0	Median	0.85619	0.93298	13.315	3	0	Plateau	0.93184	0.87618	14.23	3	0	Median	0.96199	0.98494	13.101	3	0	Plateau	16507000000	7887900000	8619500000	2592700000	1168500000	1424200000	7337900000	3381000000	3956800000	3332200000	1675100000	1657100000	3244700000	1663300000	1581400000	41322	2120	38893	252954;252955;252956;252957;252958;252959;252960;252961;252962;252963;252964;252965;252966	339328;339329;339330;339331;339332;339333;339334;339335;339336;339337;339338;339339;339340;339341;339342;339343;339344;339345;339346;339347;339348;339349;339350;339351;339352;339353;339354;339355	339355			28	
QIPAITCIQSQWR	0	Unmodified	1599.8191	0.81914587	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			76.413	75.657	2	0.022566	67294	160511_QHF_FH_JSI10i_2	48.741	22.227			1.0661	1.0873	13.444	2	2	Median	1.3631	1.1957	NaN	1	1	Median	0.83388	0.98871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28939000	13363000	15576000	13320000	4521100	8799100	15618000	8841500	6776900	0	0	0	0	0	0	41323	1600	38894	252967;252968	339356;339357	339357			2	
QIPFHDVR	0	Unmodified	1010.5298	0.52976379	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	30.72	29.985	3	0.012804	25593	160511_QHF_FH_JSI11i_3	36.334	19.558			0.79932	0.81369	13.796	5	0	Median	0.97566	0.81369	NaN	1	0	Median	0.79932	0.99172	NaN	1	0	Median	0.87048	0.842	17.66	2	0	Median	0.69946	0.73909	NaN	1	0	Median	170830000	90139000	80687000	25262000	11250000	14012000	30565000	18175000	12390000	91425000	46935000	44490000	23574000	13778000	9795100	41324	2248	38895	252969;252970;252971;252972;252973	339358;339359	339358			2	
QIPFPSGTPLHANSMVSENVIQSTAVTTVSSGTK	1	Unmodified	3484.7508	0.75079812	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	91.794	91.508	3;4	5.0438E-34	81662	160511_QHF_FH_JSI11i_3	122.11	116.32			0.78885	0.80288	25.003	10	4	Median	1.2373	1.0464	7.5155	2	0	Median	0.56348	0.68928	17.73	2	1	Median	0.89822	0.825	40.174	3	1	Median	0.74971	0.7732	5.9636	3	2	Plateau	559110000	320150000	238960000	121340000	53639000	67700000	130980000	85024000	45952000	175020000	100830000	74191000	131780000	80661000	51119000	41325	2323	38896	252974;252975;252976;252977;252978;252979;252980;252981;252982;252983	339360;339361;339362;339363;339364;339365;339366;339367;339368;339369;339370;339371;339372;339373;339374;339375;339376;339377;339378;339379;339380;339381;339382	339362			23	
QIPFPSGTPLHANSMVSENVIQSTAVTTVSSGTK	1	Oxidation (M)	3500.7457	0.74571274	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	84.973	84.801	3	2.0449E-11	73643	160511_QHF_FH_JSI12i_3	66.454	61.448			0.93866	0.87243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93866	0.87243	NaN	1	0	Median	31704000	13756000	17948000	0	0	0	0	0	0	0	0	0	31704000	13756000	17948000	41326	2323	38896	252984	339383;339384	339384		1913	2	
QIPQATASMK	1	Oxidation (M)	1089.5488	0.54884425	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	22.152	21.441	2	0.0052519	22912	160511_QHF_FH_JSI12i_2	56.432	22.179			0.79171	0.81978	56.964	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.264	1.2264	NaN	1	0	Median	0.49591	0.54798	NaN	1	0	Median	73038000	35877000	37162000	0	0	0	0	0	0	52294000	21280000	31014000	20744000	14597000	6147500	41327	309	38897	252985;252986	339385;339386	339386		123	2	
QIPQATASMK	1	Unmodified	1073.5539	0.55392962	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.27	1	5					1			1	2	1	3	28.123	27.223	2	0.0005345	23680	160511_QHF_FH_JSI9i_2	71.614	35.218			0.78095	0.71674	14.01	3	0	Median	0.78441	0.66631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71866	0.71674	NaN	1	0	Median	0.78095	0.87351	NaN	1	0	Median	504400000	300270000	204130000	159430000	76001000	83426000	0	0	0	215100000	146660000	68440000	129870000	77613000	52260000	41328	309	38897	252987;252988;252989;252990;252991;252992;252993	339387;339388;339389;339390;339391;339392;339393	339390			7	
QIPVLQTNNGPSLTGLTTIAAHLVK	1	Unmodified	2585.4541	0.45408623	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.7	101.51	3	1.3772E-21	82444	160511_QHF_FH_JSI9i_3	133.95	126.59			1.1012	0.86967	NaN	1	0	Median	1.1012	0.86967	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166140000	79286000	86850000	166140000	79286000	86850000	0	0	0	0	0	0	0	0	0	41329	323	38898	252994	339394;339395	339395			2	
QIPVVGSVLNWFSPVQALQK	1	Unmodified	2209.2259	0.2259242	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	102.68	102.68	3	2.8184E-14	91780	160511_QHF_FH_JSI11i_3	143.39	124.63			0.81416	0.81077	11.054	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78347	0.74982	NaN	1	0	Median	0.84604	0.87669	NaN	1	0	Median	100660000	58168000	42496000	0	0	0	0	0	0	61605000	37216000	24389000	39059000	20952000	18106000	41330	3111	38899	252995;252996	339396	339396			1	
QIPYTMMK	1	Unmodified	1010.4929	0.49290927	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	3	2	3	47.78	46.865	2	0.00093466	38430	160511_QHF_FH_JSI9i_3	96.253	82.096			0.96709	0.89273	16.743	11	0	Median	1.0098	0.8599	18.317	3	0	Median	0.77495	0.89273	10.958	3	0	Median	0.92833	0.92145	15.064	2	0	Median	0.98408	1.0065	26.112	3	0	Median	5982400000	3142500000	2839800000	1155600000	477820000	677760000	1397900000	793640000	604220000	2209600000	1205500000	1004100000	1219300000	665580000	553730000	41331	2146	38900	252997;252998;252999;253000;253001;253002;253003;253004;253005;253006;253007	339397;339398;339399;339400;339401;339402;339403;339404;339405;339406;339407;339408;339409;339410;339411;339412;339413;339414;339415;339416	339406			20	
QIPYTMMK	1	Oxidation (M)	1026.4878	0.48782389	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	36.43	35.575	2	0.034042	30437	160511_QHF_FH_JSI12i_2	43.808	24.021			1.3351	1.4249	59.95	3	0	Median	NaN	NaN	NaN	0	0	Median	2.3285	2.8897	NaN	1	0	Median	0.9116	0.87725	NaN	1	0	Median	1.3351	1.4249	NaN	1	0	Median	174620000	66224000	108390000	0	0	0	87524000	29899000	57625000	46234000	20291000	25943000	40860000	16034000	24826000	41332	2146	38900	253008;253009;253010	339417	339417			1	
QIQDMAEEK	1	Unmodified	1090.4965	0.49647433	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	18.718	18.432	2	0.001741	15796	160511_QHF_FH_JSI10i_1	76.572	64.525			0.28888	0.30788	39.226	3	3	Median	NaN	NaN	NaN	0	0	Median	0.2328	0.27293	NaN	1	1	Median	0.5869	0.56725	NaN	1	1	Median	0.28888	0.30788	NaN	1	1	Median	112280000	81251000	31030000	0	0	0	42534000	32923000	9610200	29311000	15119000	14192000	40436000	33209000	7227100	41333	3395	38901	253011;253012;253013	339418;339419;339420	339420			3	
QIQDMTPLSEQEMNAHLAEESRK	1	Unmodified	2684.2534	0.25341387	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.792	55.792	4	0.0030041	49485	160511_QHF_FH_JSI11i_3	35.918	26.83			0.34687	0.31462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34687	0.31462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33177000	14825000	18352000	0	0	0	0	0	0	33177000	14825000	18352000	0	0	0	41334	5622	38902	253014	339421	339421			1	
QIQDQLNELEER	0	Unmodified	1513.7372	0.73724996	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.364	48.944	2	4.2964E-06	43499	160511_QHF_FH_JSI9i_1	100.09	43.652			0.80002	0.95633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80002	0.95633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64139000	31914000	32226000	0	0	0	64139000	31914000	32226000	0	0	0	0	0	0	41335	3839	38903	253015;253016;253017;253018	339422;339423;339424;339425	339425			4	
QIQEEITGNTEALSGR	0	Unmodified	1744.8592	0.85915601	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.299	47.617	2	5.5385E-40	43055	160511_QHF_FH_JSI11i_1	201.08	117.21			0.95628	0.91581	4.933	4	0	Median	1.1099	0.90256	NaN	1	0	Median	0.77883	0.9177	NaN	1	0	Median	0.93427	0.91392	NaN	1	0	Median	0.97881	1.0048	NaN	1	0	Median	401490000	204000000	197500000	81584000	33549000	48035000	108970000	61442000	47526000	122310000	60936000	61372000	88631000	48068000	40563000	41336	5028	38904	253019;253020;253021;253022	339426;339427;339428;339429;339430;339431;339432	339427			7	
QIQEERDER	0	Unmodified	1201.5687	0.56872807	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.12	0.331		7	1							2	2	2	2	5.6561	5.3486	2;3	1.0177E-06	3191	160511_QHF_FH_JSI9i_2	124.74	33.425			0.83215	0.8483	28.693	7	0	Median	0.89068	0.78358	NaN	1	0	Median	0.76058	0.92969	12.956	2	0	Median	0.84309	0.84345	7.2341	2	0	Median	0.99748	1.026	63.904	2	0	Median	639170000	319620000	319550000	129120000	57646000	71472000	214500000	118960000	95532000	171190000	83456000	87736000	124370000	59555000	64813000	41337	238	38905	253023;253024;253025;253026;253027;253028;253029;253030	339433;339434;339435	339434			3	
QIQELVEAIVLPMNHK	1	Unmodified	1861.0132	0.013154229	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	1	2	5	5	96.899	95.687	2;3	2.7892E-08	87527	160511_QHF_FH_JSI11i_3	174.73	153.48			0.90657	0.90085	60.655	13	7	Median	1.0689	0.90085	NaN	1	0	Median	1.2127	1.463	72.393	2	0	Median	0.90657	0.93192	70.254	5	4	Median	0.78141	0.87587	61.426	5	3	Median	1378000000	732960000	645070000	72501000	26927000	45574000	147880000	80560000	67318000	435090000	217590000	217490000	722560000	407880000	314680000	41338	1131	38906	253031;253032;253033;253034;253035;253036;253037;253038;253039;253040;253041;253042;253043	339436;339437;339438;339439;339440;339441;339442;339443;339444;339445;339446;339447;339448;339449;339450;339451;339452;339453;339454;339455;339456;339457;339458;339459;339460;339461;339462;339463;339464;339465;339466;339467	339440			32	
QIQFADDMQEFTK	1	Unmodified	1599.7239	0.72390808	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	1	2	3	72	71.383	2	3.1889E-22	63466	160511_QHF_FH_JSI9i_1	176.78	167.77			0.96475	1.0345	13.192	7	5	Median	1.0928	0.90403	NaN	1	0	Median	0.86962	1.0345	NaN	1	1	Median	0.92859	0.91332	24.741	2	2	Median	0.96475	1.0605	8.0648	3	2	Median	1076900000	574210000	502730000	120190000	61368000	58818000	190020000	101790000	88231000	370660000	197540000	173130000	396080000	213520000	182560000	41339	389	38907	253044;253045;253046;253047;253048;253049;253050	339468;339469;339470;339471;339472;339473;339474;339475	339474			8	
QIQITQLFGVPVVVALNVFK	1	Unmodified	2212.2984	0.29836086	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3		2	2	1	102.68	98.512	2;3	2.47E-87	56655	160513_QHF_FH_JSI10Kac_6	278.97	258.59			0.84416	0.91997	13.699	5	1	Median	NaN	NaN	NaN	0	0	Median	0.77724	0.92005	9.7181	2	0	Median	1.0685	1.0372	16.956	2	1	Median	0.75942	0.82597	NaN	1	0	Median	229870000	132020000	97852000	0	0	0	174280000	106940000	67341000	48114000	20168000	27946000	7480900	4916100	2564800	41340	3141	38908	253051;253052;253053;253054;253055	339476;339477;339478;339479;339480;339481	339480			6	
QIQLAQK	1	Unmodified	827.4865	0.48650199	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.638	17.603	2	0.032473	14399	160511_QHF_FH_JSI12i_2	52.683	18.945			0.58625	0.63118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58625	0.63118	NaN	1	1	Median	40040000	25662000	14378000	0	0	0	0	0	0	0	0	0	40040000	25662000	14378000	41341	225	38909	253056	339482	339482			1	
QIQLWHFILELLQK	1	Unmodified	1808.0349	0.034875949	1509	P41162;Q6ZN32	ETV3;ETV3L	ETS translocation variant 3;ETS translocation variant 3-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			100.16	92.719	3	1.4801E-24	55462	160513_QHF_FH_JSI10Kac_6	152.89	136.49			0.84919	0.83657	3.0145	2	1	Median	0.97344	0.81893	NaN	1	1	Median	0.7408	0.8546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126480000	64356000	62124000	16916000	9703700	7211900	109560000	54652000	54912000	0	0	0	0	0	0	41342	1509	38910	253057;253058;253059	339483;339484;339485	339484			3	
QIQLWHFILELLR	0	Unmodified	1707.9824	0.98244645	1709	P50548	ERF	ETS domain-containing transcription factor ERF	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			99.715	93.994	2;3	9.4238E-21	55230	160513_QHF_FH_JSI10Kac_6	155.66	136.83			0.94886	1.1177	49.908	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94886	1.1177	49.908	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	211070000	111910000	99160000	0	0	0	211070000	111910000	99160000	0	0	0	0	0	0	41343	1709	38911	253060;253061	339486;339487;339488	339486			2	
QIQNLQK	1	Unmodified	870.49232	0.49231565	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	2	1	12.494	12.013	2	0.0049208	9601	160511_QHF_FH_JSI11i_1	106.76	44.764			2.1398	2.1982	21.227	6	6	Median	2.6517	2.2094	5.0886	2	2	Median	1.9875	2.3021	NaN	1	1	Median	1.7545	1.744	37.094	2	2	Median	1.6403	1.8282	NaN	1	1	Median	688020000	326400000	361620000	193150000	86292000	106860000	151750000	63037000	88714000	270010000	132710000	137300000	73104000	44357000	28747000	41344	977	38912	253062;253063;253064;253065;253066;253067	339489;339490;339491;339492;339493;339494	339489			6	
QIQNLQKAGTR	1	Acetyl (K)	1297.7102	0.71024735	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		33.493	24.254	2	0.00082628	15169	160513_QHF_FH_JSI11Kac_4	88.056	46.627			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4028600	4028600	0	0	0	0	0	0	0	4028600	4028600	0	0	0	0	41345	977	38913	253068	339495	339495	748		1	
QIQPFQVLTTR	0	Unmodified	1329.7405	0.74048484	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	68.576	67.929	2	7.5096E-06	59931	160511_QHF_FH_JSI9i_2	109.66	67.065			0.69038	0.75369	11.436	6	2	Median	1.0557	0.90013	NaN	1	0	Median	0.64626	0.76512	NaN	1	0	Median	0.74484	0.71742	11.595	2	0	Median	0.66841	0.70297	7.7249	2	2	Median	243010000	134700000	108320000	37620000	15027000	22593000	50283000	27243000	23040000	90387000	51696000	38691000	64723000	40730000	23992000	41346	1148	38914	253069;253070;253071;253072;253073;253074	339496;339497;339498;339499;339500;339501	339498			6	
QIQQLESNNRDLQDK	1	Unmodified	1827.9075	0.90750318	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				27.275	26.24	3	0.029921	22647	160511_QHF_FH_JSI9i_2	37.555	15.545			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10316000	0	10316000	10316000	0	10316000	0	0	0	0	0	0	0	0	0	41347	475	38915	253075	339502	339502			1	
QIQQYMK	1	Unmodified	937.46914	0.46913736	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.73	3	6					1			3	2	3	2	22.518	20.982	2	0.0033221	18079	160511_QHF_FH_JSI10i_2	128.75	38.049			1.0486	0.99966	63.8	10	7	Median	0.92364	0.76278	65.752	3	2	Median	0.87581	1.0713	95.219	2	2	Median	0.54625	0.56003	59.607	3	3	Median	1.468	1.6005	24.291	2	0	Median	2191900000	1156200000	1035700000	638700000	326220000	312480000	385180000	222340000	162840000	646750000	355680000	291070000	521270000	251920000	269350000	41348	1417	38916	253076;253077;253078;253079;253080;253081;253082;253083;253084;253085	339503;339504;339505;339506;339507;339508;339509;339510;339511;339512	339512			10	
QIQTEAAQLLTSFSEK	1	Unmodified	1792.9207	0.92069363	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			89.904	89.405	2	0.0057636	79345	160511_QHF_FH_JSI10i_2	60.161	43.248			0.67981	0.82848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67981	0.82848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35589000	20137000	15452000	0	0	0	35589000	20137000	15452000	0	0	0	0	0	0	41349	4024	38917	253086	339513	339513			1	
QIQWFWQVVK	1	Unmodified	1360.7292	0.72919187	121	O00308	WWP2	NEDD4-like E3 ubiquitin-protein ligase WWP2	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	89.873	80.477	2	0.0036905	44988	160513_QHF_FH_JSI11Kac_6	67.494	24.629			0.49766	0.51075	29.842	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42497	0.41359	NaN	1	0	Median	0.58279	0.63074	NaN	1	0	Median	37397000	26190000	11206000	0	0	0	0	0	0	21453000	15043000	6409500	15944000	11147000	4797000	41350	121	38918	253087;253088	339514	339514			1	
QIREPVDLQK	1	Unmodified	1224.6826	0.68263561	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.837	29.837	3	0.026434	25829	160511_QHF_FH_JSI11i_3	32.999	21.68			0.9296	0.88086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9296	0.88086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25429000	11845000	13585000	0	0	0	0	0	0	25429000	11845000	13585000	0	0	0	41351	5482	38919	253089	339515	339515			1	
QIRHESGASIK	1	Unmodified	1224.6575	0.65748349	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			7.0581	6.5213	3	0.00074552	4337	160511_QHF_FH_JSI9i_3	56.414	38.605			0.88268	0.85267	3.0021	2	0	Median	1.0415	0.83476	NaN	1	0	Median	0.74805	0.87096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295640000	141710000	153920000	197670000	82026000	115650000	97967000	59688000	38279000	0	0	0	0	0	0	41352	1975	38920	253090;253091	339516;339517;339518	339517			3	
QIRVDHAGK	1	Unmodified	1022.5621	0.56212655	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			7.031	6.4942	3	0.023333	4407	160511_QHF_FH_JSI10i_3	34.692	20.923			0.88073	0.85369	1.3412	2	0	Median	1.0295	0.84563	NaN	1	0	Median	0.75346	0.86183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159070000	72018000	87053000	98489000	36905000	61584000	60581000	35113000	25469000	0	0	0	0	0	0	41353	2141	38921	253092;253093	339519	339519			1	
QISDGEREELNLTANR	0	Unmodified	1843.9024	0.90241781	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	2	4	2	38.978	38.457	2;3	1.0122E-15	33640	160511_QHF_FH_JSI10i_2	164.41	138.88			0.96349	0.95179	17.149	9	0	Median	1.1143	0.94722	NaN	1	0	Median	0.98677	1.196	36.024	2	0	Median	1.0024	0.94565	10.522	4	0	Median	0.90542	0.96875	2.4972	2	0	Median	1480800000	774030000	706760000	249480000	126630000	122850000	348150000	178890000	169260000	575270000	310290000	264980000	307890000	158220000	149670000	41354	731	38922	253094;253095;253096;253097;253098;253099;253100;253101;253102	339520;339521;339522;339523;339524;339525;339526;339527;339528;339529	339528			10	
QISDLMGLIPK	1	Unmodified	1213.674	0.67404476	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.769	91.257	2	0.012822	78614	160511_QHF_FH_JSI12i_2	44.425	29.759			0.76246	0.72643	15.259	4	0	Median	0.87268	0.75168	NaN	1	0	Median	0.53628	0.6769	NaN	1	0	Median	0.97846	0.95067	NaN	1	0	Median	0.66617	0.70203	NaN	1	0	Median	56962000	32764000	24198000	11479000	5314100	6165000	13871000	9463900	4407600	17615000	9834600	7780300	13997000	8151300	5845300	41355	641	38923	253103;253104;253105;253106	339530;339531	339530			2	
QISDVERDVQNFPAATDEK	1	Unmodified	2161.0287	0.028740531	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	58.733	58.114	3	0.00012987	52722	160511_QHF_FH_JSI11i_1	78.413	54.126			0.92902	1.0743	24.651	5	4	Median	0.88813	0.72186	NaN	1	0	Median	0.92902	1.0829	NaN	1	1	Median	0.88885	0.87713	28.681	2	2	Median	1.1824	1.2046	NaN	1	1	Median	302020000	141730000	160290000	48503000	20170000	28333000	51323000	28009000	23314000	146240000	72821000	73418000	55956000	20734000	35221000	41356	432	38924	253107;253108;253109;253110;253111	339532;339533;339534;339535;339536;339537	339533			6	
QISGFGK	1	Unmodified	735.39154	0.39153897	1078	P15529	CD46	Membrane cofactor protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.184	19.875	2	0.02937	16352	160511_QHF_FH_JSI11i_2	52.636	31.09			1.0248	1.038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0248	1.038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176950000	79737000	97211000	0	0	0	0	0	0	176950000	79737000	97211000	0	0	0	41357	1078	38925	253112	339538	339538			1	
QISGFGKK	2	Unmodified	863.4865	0.48650199	1078	P15529	CD46	Membrane cofactor protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.997	12.105	2	0.045087	9442	160511_QHF_FH_JSI9i_3	53.554	26.952			0.62779	0.50785	NaN	1	1	Median	0.62779	0.50785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44156000	22627000	21529000	44156000	22627000	21529000	0	0	0	0	0	0	0	0	0	41358	1078	38926	253113	339539	339539			1	
QISGQYSGSPQLLK	1	Unmodified	1504.7886	0.78855725	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	2	1	47.69	46.79	2	9.0398E-05	40196	160511_QHF_FH_JSI11i_2	114.72	79.497			0.92974	0.94969	11.228	6	6	Median	0.97632	0.86109	17.821	2	2	Median	0.76371	0.93757	NaN	1	1	Median	1.0255	0.9955	4.8451	2	2	Median	0.76729	0.84277	NaN	1	1	Median	182280000	95639000	86638000	55250000	27541000	27708000	18904000	12872000	6032200	77241000	35773000	41468000	30883000	19453000	11430000	41359	4181	38927	253114;253115;253116;253117;253118;253119;253120	339540;339541;339542;339543;339544;339545;339546	339544			7	
QISLLTSAVNHLK	1	Unmodified	1422.8195	0.81946344	471	O75071	EFCAB14	EF-hand calcium-binding domain-containing protein 14	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.385	69.086	3	0.0082098	59825	160511_QHF_FH_JSI12i_3	46.704	33.872			0.1857	0.20196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1857	0.20196	NaN	1	1	Median	6515600	5981200	534370	0	0	0	0	0	0	0	0	0	6515600	5981200	534370	41360	471	38928	253121	339547	339547			1	
QISPQEFIHELK	1	Unmodified	1467.7722	0.7721789	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.156	71.275	3	2.7002E-05	63280	160511_QHF_FH_JSI10i_2	87.18	74.619			1.1351	1.2346	43.594	4	1	Median	0.64773	0.56877	NaN	1	1	Median	1.2434	1.5213	NaN	1	0	Median	1.2284	1.3042	NaN	1	0	Median	1.049	1.1687	NaN	1	0	Median	111580000	56975000	54610000	12609000	7053300	5555300	31997000	15647000	16350000	39097000	18517000	20581000	27882000	15758000	12123000	41361	4986	38929	253122;253123;253124;253125	339548;339549;339550;339551	339551			3	
QISPQPSTGLIYLIGHPEGQIK	1	Unmodified	2375.2849	0.28489564	3139	Q6SJ93	FAM111B	Protein FAM111B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.137	88.081	3	3.4542E-06	76549	160511_QHF_FH_JSI12i_3	85.932	73.084			0.92848	0.88465	6.5437	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98773	0.92654	NaN	1	0	Median	0.87278	0.84465	NaN	1	1	Median	54579000	30905000	23674000	0	0	0	0	0	0	21955000	12685000	9270000	32624000	18220000	14404000	41362	3139	38930	253126;253127	339552;339553	339553			2	
QISQAYEVLSDAK	1	Unmodified	1450.7304	0.73037367	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			2	4	3	2	57.951	56.053	2	1.2647E-07	50785	160511_QHF_FH_JSI11i_1	171.49	112.23			1.0364	1.2244	65.652	9	3	Median	1.1927	0.99504	42.929	2	0	Median	1.0364	1.2244	82.058	3	1	Median	0.62147	0.61189	46.213	2	1	Median	1.5509	1.6926	44.004	2	1	Median	2361200000	1174400000	1186800000	540500000	235770000	304730000	631280000	340540000	290740000	728360000	377000000	351350000	461070000	221080000	240000000	41363	1376	38931	253128;253129;253130;253131;253132;253133;253134;253135;253136;253137;253138	339554;339555;339556;339557;339558;339559;339560;339561;339562;339563;339564;339565;339566;339567	339555			14	
QISQEHTPVALEAYFVPLVK	1	Unmodified	2268.2154	0.21541909	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.849	97.659	3	5.0984E-07	84167	160511_QHF_FH_JSI12i_2	94.856	86.362			0.96876	1.0154	41.318	4	0	Median	0.71193	0.62665	NaN	1	0	Median	0.64717	0.79202	NaN	1	0	Median	1.3182	1.3018	NaN	1	0	Median	1.347	1.5102	NaN	1	0	Median	100490000	51490000	49002000	16839000	11913000	4925800	21254000	12467000	8786300	33156000	14169000	18987000	29244000	12941000	16303000	41364	1346	38932	253139;253140;253141;253142	339568;339569;339570;339571;339572;339573	339569			6	
QISQMADDTVAELDR	0	Unmodified	1690.7832	0.78321387	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	62.045	61.553	2	1.4407E-25	55644	160511_QHF_FH_JSI10i_1	225.13	206.86			2.2819	2.3978	57.777	3	2	Median	NaN	NaN	NaN	0	0	Median	2.3367	2.785	NaN	1	1	Median	0.96911	0.95802	NaN	1	0	Median	2.2819	2.3978	NaN	1	1	Median	492400000	161300000	331100000	0	0	0	220680000	55576000	165100000	112820000	57930000	54887000	158900000	47796000	111110000	41365	4036	38933	253143;253144;253145;253146	339574;339575;339576;339577;339578	339578			5	
QISQSILLLLQPLQTVIQK	1	Unmodified	2162.3038	0.30384017	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	2	2	2	100.34	94.218	3	2.3737E-11	51647	160513_QHF_FH_JSI11Kac_6	118.96	115.24			1.0046	0.89232	16.242	7	2	Median	1.2756	1.0859	28.473	2	2	Median	0.72763	0.87499	NaN	1	0	Median	1.0834	0.99963	16.06	2	0	Median	0.94725	0.97997	13.853	2	0	Median	910930000	452790000	458140000	314820000	149350000	165480000	149550000	89575000	59978000	220710000	106560000	114150000	225840000	107310000	118540000	41366	3918	38934	253147;253148;253149;253150;253151;253152;253153;253154	339579;339580;339581;339582;339583;339584;339585;339586;339587;339588;339589;339590	339583			12	
QISSFMSEISDEFK	1	Unmodified	1646.7498	0.74978848	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	3	2	94.839	94.528	2;3	1.9567E-81	83691	160511_QHF_FH_JSI10i_2	250.67	215.92			0.82892	0.84918	43.392	8	3	Median	1.0072	0.86384	77.505	2	2	Median	0.68306	0.82492	NaN	1	0	Median	0.85758	0.87415	50.857	3	1	Median	0.87496	0.96973	27.755	2	0	Median	524150000	240500000	283650000	14146000	6435800	7710000	144330000	64248000	80084000	223010000	94344000	128660000	142670000	75471000	67194000	41367	5708	38935	253155;253156;253157;253158;253159;253160;253161;253162	339591;339592;339593;339594;339595;339596;339597;339598;339599;339600;339601;339602;339603;339604;339605	339604			15	
QISSFVSEISDEFK	1	Unmodified	1614.7777	0.77771779	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			94.759	94.446	2	0.031664	83816	160511_QHF_FH_JSI10i_2	58.595	48.363			0.35418	0.43972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.35418	0.43972	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60836000	42225000	18611000	0	0	0	60836000	42225000	18611000	0	0	0	0	0	0	41368	5234	38936	253163	339606	339606			0	
QISSLRDEVEAK	1	Unmodified	1373.7151	0.71505795	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		2	2								4			32.294	31.132	2;3	0.00065193	27358	160511_QHF_FH_JSI10i_2	72.681	55.742			1.5235	1.8375	110.81	4	4	Median	NaN	NaN	NaN	0	0	Median	1.5235	1.8375	110.81	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	412050000	135400000	276650000	0	0	0	412050000	135400000	276650000	0	0	0	0	0	0	41369	1400	38937	253164;253165;253166;253167	339607;339608;339609;339610	339610			4	
QISVADLPGLIEGAHMNK	1	Unmodified	1891.9826	0.98258238	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	90.246	89.889	3	4.0683E-05	79692	160511_QHF_FH_JSI10i_2	62.589	56.685			0.98142	1.0113	35.323	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76275	0.92713	NaN	1	0	Median	1.8395	1.7771	NaN	1	0	Median	0.98142	1.0113	NaN	1	0	Median	114160000	59246000	54915000	0	0	0	37143000	23270000	13874000	17404000	9770400	7633700	59613000	26206000	33408000	41370	17	38938	253168;253169;253170;253171	339611;339612;339613;339614	339613			2	
QISVGFIGYPNVGK	1	Unmodified	1477.7929	0.79291434	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	77.433	76.8	2	9.0606E-06	66352	160511_QHF_FH_JSI12i_2	86.114	62.391			1.6519	1.671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6519	1.671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18980000	6279800	12700000	0	0	0	0	0	0	18980000	6279800	12700000	0	0	0	41371	2471	38939	253172;253173	339615;339616	339615			2	
QISYNYSDLDQSNVTEETPEGEEHHPVADTENK	1	Unmodified	3774.6405	0.6405152	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.643	5	5	1							2	3	2	4	54.818	54.123	4	1.163E-46	49194	160511_QHF_FH_JSI11i_1	153.25	151.74			1.0002	1.0012	29.368	11	3	Median	1.2636	1.0961	22.242	2	1	Median	0.77465	0.9001	35.995	3	1	Plateau	0.91174	0.91248	5.8548	2	0	Median	1.0729	1.1327	35.701	4	1	Median	1020400000	540600000	479850000	121150000	51373000	69779000	323380000	190570000	132810000	257860000	147520000	110340000	318060000	151140000	166920000	41372	3609	38940	253174;253175;253176;253177;253178;253179;253180;253181;253182;253183;253184	339617;339618;339619;339620;339621;339622;339623;339624;339625;339626;339627;339628;339629;339630;339631;339632;339633;339634;339635;339636;339637;339638;339639;339640	339617			24	
QITAQQINK	1	Unmodified	1042.5771	0.57710791	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				18.789	17.69	2	0.0094293	14775	160511_QHF_FH_JSI9i_1	81.119	52.22			0.56657	0.46303	NaN	1	0	Median	0.56657	0.46303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129600000	73210000	56389000	129600000	73210000	56389000	0	0	0	0	0	0	0	0	0	41373	3904	38941	253185	339641	339641			0	
QITDHTVNLR	0	Unmodified	1195.6309	0.63093439	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	15.8	0.433								1	3	1	1	1	1	74.185	64.987	2	0.056996	33513	160513_QHF_FH_JSI9Kac_5	35.295	7.1212			0.93803	1.106	10.404	4	0	Linear	1.3152	1.0993	NaN	1	0	Median	0.93481	1.1128	NaN	1	0	Median	0.98433	0.90464	NaN	1	0	Median	1.0523	1.1266	NaN	1	0	Median	187370000	93601000	93768000	10451000	5151300	5300000	77783000	37729000	40054000	55808000	29613000	26195000	43326000	21107000	22219000	41374	4330	38942	253186;253187;253188;253189	339642	339642			1	
QITDNIFLTTAEVIAQQVSDK	1	Unmodified	2333.2115	0.21145592	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	102.95	102.86	3	5.2271E-29	88757	160511_QHF_FH_JSI12i_2	178.32	169.61			0.8687	0.90673	7.4815	6	4	Median	1.0926	0.94186	9.1316	2	2	Median	0.73143	0.88658	6.9339	2	2	Median	0.85743	0.85803	NaN	1	0	Median	0.88013	0.9953	NaN	1	0	Median	715390000	402080000	313310000	156670000	79907000	76765000	284090000	175240000	108850000	143650000	73179000	70472000	130970000	73754000	57220000	41375	1616	38943	253190;253191;253192;253193;253194;253195	339643;339644;339645;339646;339647;339648;339649	339643			7	
QITLNDLPVGR	0	Unmodified	1224.6826	0.68263561	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	6.22	4	4	4				3	5		4	5	5	6	68.977	64.264	2	3.4928E-59	56919	160511_QHF_FH_JSI9i_2	225.67	179.99			0.99295	1.0027	30.712	20	4	Plateau	1.208	0.97611	7.2994	4	0	Linear	0.84792	1.0142	45.264	5	1	Plateau	1.0309	1.0169	31.579	5	1	Median	0.9775	1.0589	29.238	6	2	Median	8200300000	4044000000	4156300000	1479900000	665300000	814630000	1927000000	1085100000	841820000	2828000000	1355000000	1473000000	1965500000	938560000	1026900000	41376	2364	38944	253196;253197;253198;253199;253200;253201;253202;253203;253204;253205;253206;253207;253208;253209;253210;253211;253212;253213;253214;253215	339650;339651;339652;339653;339654;339655;339656;339657;339658;339659;339660;339661;339662;339663;339664;339665;339666;339667;339668;339669;339670;339671;339672;339673;339674;339675;339676;339677;339678;339679;339680;339681;339682;339683;339684;339685	339672			36	
QITPQQQEK	1	Unmodified	1098.5669	0.56693715	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	10.152	7.5134	2	1.7758E-08	6631	160511_QHF_FH_JSI10i_1	151.44	126.52			1.0344	1.0678	13.2	6	1	Median	1.3985	1.1522	NaN	1	0	Median	0.91553	1.0699	NaN	1	0	Median	1.2751	1.2468	22.202	2	1	Median	0.95387	1.036	0.58542	2	0	Median	3677800000	1841900000	1835900000	778260000	325180000	453070000	1013400000	565380000	448000000	920080000	462630000	457450000	966130000	488740000	477380000	41377	2094	38945	253216;253217;253218;253219;253220;253221;253222	339686;339687;339688;339689;339690;339691;339692;339693;339694;339695;339696	339692			11	
QITQSALLAEAR	0	Unmodified	1299.7147	0.71466402	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.89	3	5	1			1	3	1		2	4	3	5	52.671	48.422	2	1.7826E-75	26600	160513_QHF_FH_JSI10Kac_4	234.65	128.05			0.89723	1.026	17.625	14	3	Median	1.2327	1.0493	4.4574	2	0	Median	0.83742	1.0184	24.804	4	1	Median	0.98291	0.94657	11.69	3	0	Plateau	0.92483	1.0363	17.248	5	2	Median	3010400000	1497500000	1513000000	488940000	216790000	272150000	611240000	329470000	281760000	780250000	380590000	399660000	1130000000	570600000	559380000	41378	2094	38946	253223;253224;253225;253226;253227;253228;253229;253230;253231;253232;253233;253234;253235;253236	339697;339698;339699;339700;339701;339702;339703;339704;339705;339706;339707;339708;339709;339710;339711	339701			14	
QITQSALLAEARSDYSEAAK	1	Unmodified	2151.0808	0.080776102	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			64.49	63.647	3	0.0086441	56421	160511_QHF_FH_JSI10i_2	39.237	17.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15094000	15094000	0	0	0	0	15094000	15094000	0	0	0	0	0	0	0	41379	2094	38947	253237	339712	339712			1	
QITQVYGFYDECLRK	1	Unmodified	1918.9247	0.92473315	2065;2014;1912	P62714;P67775;P60510	PPP2CB;PPP2CA;PPP4C	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 4 catalytic subunit	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	2	1	2	3	66.03	62.083	3	3.0836E-05	53416	160511_QHF_FH_JSI12i_2	82.707	65.425			0.93302	0.95749	34.052	8	1	Median	1.0228	0.87395	46.541	2	1	Median	0.62281	0.75485	NaN	1	0	Median	0.67379	0.67385	5.4552	2	0	Median	1.2485	1.2765	6.6042	3	0	Plateau	817520000	403850000	413670000	86170000	49859000	36311000	198720000	84743000	113980000	239720000	121230000	118500000	292900000	148020000	144880000	41380	2014;2065;1912	38948	253238;253239;253240;253241;253242;253243;253244;253245	339713;339714;339715;339716;339717;339718;339719;339720;339721;339722	339713			10	
QITSADAVR	0	Unmodified	959.50361	0.50360861	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.208	14.749	2	0.00092088	12527	160511_QHF_FH_JSI12i_1	71.614	43.127			0.74295	0.72976	23.308	4	1	Median	1.0641	0.86189	NaN	1	1	Median	0.53412	0.61788	NaN	1	0	Median	0.61715	0.5983	NaN	1	0	Median	0.89439	0.9493	NaN	1	0	Median	755120000	414120000	341000000	181100000	97459000	83640000	204510000	108770000	95743000	162650000	98696000	63959000	206860000	109200000	97660000	41381	737	38949	253246;253247;253248;253249	339723;339724;339725	339724			3	
QITSYGETCPGLEQYAIK	1	Unmodified	2056.9776	0.97755658	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	65.43	64.844	2;3	2.3327E-29	58867	160511_QHF_FH_JSI11i_1	228.25	207.79			0.73321	0.8606	28.132	9	8	Median	0.87233	0.71205	47.522	2	2	Median	0.73321	0.8606	15.71	3	3	Median	0.7233	0.70549	29.387	2	2	Median	0.89607	0.93714	35.236	2	1	Median	1197400000	694860000	502570000	154410000	84871000	69543000	402440000	242630000	159810000	314040000	191100000	122940000	326530000	176260000	150270000	41382	1721	38950	253250;253251;253252;253253;253254;253255;253256;253257;253258	339726;339727;339728;339729;339730;339731;339732;339733;339734;339735	339726			10	
QITSYGETCPGLEQYAIKK	2	Unmodified	2185.0725	0.072519601	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	57.095	56.427	3	8.5272E-26	48437	160511_QHF_FH_JSI12i_3	182.34	154.85			1.106	1.1045	14.562	6	0	Median	1.2377	1.1104	NaN	1	0	Median	0.8564	1.0343	NaN	1	0	Median	1.0582	1.042	7.4889	2	0	Median	1.2817	1.3589	11.3	2	0	Median	512500000	264200000	248310000	46747000	23058000	23688000	92958000	51002000	41956000	186840000	103150000	83681000	185960000	86983000	98980000	41383	1721	38951	253259;253260;253261;253262;253263;253264	339736;339737;339738;339739;339740;339741;339742;339743;339744;339745;339746;339747	339745			12	
QITVNDLPVGR	0	Unmodified	1210.667	0.66698555	2249;1390	Q06830;P32119	PRDX1;PRDX2	Peroxiredoxin-1;Peroxiredoxin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.99	10	9	4		1	3	4	4	1	6	12	9	9	58.67	54.352	2;3	2.6146E-59	49404	160511_QHF_FH_JSI12i_1	229.17	200.96			1.0519	1.0531	28.71	35	11	Median	1.2756	1.0672	24.579	6	1	Median	0.85028	1.017	32.143	11	5	Median	1.0646	1.0424	9.1452	9	3	Median	1.0519	1.0897	38.214	9	2	Median	61939000000	29459000000	32480000000	9998200000	4467800000	5530400000	20439000000	9831900000	10607000000	16560000000	8445300000	8114500000	14942000000	6713800000	8227900000	41384	2249;1390	38952	253265;253266;253267;253268;253269;253270;253271;253272;253273;253274;253275;253276;253277;253278;253279;253280;253281;253282;253283;253284;253285;253286;253287;253288;253289;253290;253291;253292;253293;253294;253295;253296;253297;253298;253299;253300	339748;339749;339750;339751;339752;339753;339754;339755;339756;339757;339758;339759;339760;339761;339762;339763;339764;339765;339766;339767;339768;339769;339770;339771;339772;339773;339774;339775;339776;339777;339778;339779;339780;339781;339782;339783;339784;339785;339786;339787;339788;339789;339790;339791;339792;339793;339794;339795;339796;339797;339798;339799;339800;339801;339802;339803;339804;339805;339806;339807;339808	339761			61	
QIVGTPVNSEDSDTR	0	Unmodified	1616.7642	0.76419299	2914	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		29.47	29.251	2	0.0007505	26053	160511_QHF_FH_JSI11i_1	66.267	51.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41385	2914	38953	253301	339809	339809			1	
QIVQSISDLNEIFR	0	Unmodified	1660.8784	0.87843489	187	O14662	STX16	Syntaxin-16	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	93.53	92.772	2	0.00097094	80038	160511_QHF_FH_JSI12i_2	83.397	56.068			0.30983	0.32081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30983	0.32081	NaN	1	1	Median	5909100	4828900	1080200	0	0	0	0	0	0	0	0	0	5909100	4828900	1080200	41386	187	38954	253302	339810	339810			1	
QIVSEMLR	0	Unmodified	974.5219	0.52190122	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	42.082	40.952	2	0.0052168	36021	160511_QHF_FH_JSI10i_2	74.2	38.999			0.86772	0.97377	3.7086	3	1	Median	1.1033	0.9378	NaN	1	0	Median	0.81306	1.01	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86772	0.97377	NaN	1	0	Median	322220000	171810000	150400000	95681000	45341000	50339000	110130000	60835000	49293000	0	0	0	116410000	65637000	50772000	41387	726	38955	253303;253304;253305	339811;339812;339813	339813			3	
QIVSGSR	0	Unmodified	745.40825	0.40825167	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.77	6.36	4	4	4				3	7		4	7	6	5	7.0106	2.5823	2	0.00015172	2499	160513_QHF_FH_JSI11Kac_5	118.69	75.62			0.96606	0.9965	11.367	22	0	Median	1.3203	1.1038	3.591	4	0	Median	0.76702	0.91812	16.588	7	0	Median	1.0141	0.99096	7.2493	6	0	Median	0.91612	0.99811	9.1098	5	0	Median	13776000000	6465100000	7311200000	2511700000	1038300000	1473400000	3410200000	1701400000	1708800000	4335500000	1893400000	2442100000	3518900000	1832000000	1686900000	41388	2061	38956	253306;253307;253308;253309;253310;253311;253312;253313;253314;253315;253316;253317;253318;253319;253320;253321;253322;253323;253324;253325;253326;253327	339814;339815;339816;339817;339818;339819;339820;339821;339822;339823;339824;339825;339826;339827;339828;339829;339830;339831;339832;339833;339834;339835;339836;339837;339838;339839;339840	339834			27	
QIVWNGPVGVFEWEAFAR	0	Unmodified	2104.053	0.053045209	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.61	6.7		8	3						7	4	6	4	4	99.833	96.77	2;3	0	52308	160513_QHF_FH_JSI10Kac_6	372.73	338.95			1.0311	1.0629	11.398	18	3	Median	1.2562	1.0493	19.297	4	1	Median	0.93658	1.1226	5.6446	6	2	Median	1.0077	1.02	1.575	4	0	Linear	1.0952	1.1292	13.018	4	0	Median	9759800000	4749100000	5010700000	2638400000	1153100000	1485300000	2644500000	1406000000	1238500000	2252100000	1067600000	1184500000	2224700000	1122400000	1102400000	41389	775	38957	253328;253329;253330;253331;253332;253333;253334;253335;253336;253337;253338;253339;253340;253341;253342;253343;253344;253345	339841;339842;339843;339844;339845;339846;339847;339848;339849;339850;339851;339852;339853;339854;339855;339856;339857;339858;339859;339860	339858			20	
QIVWNGPVGVFEWEAFARGTK	1	Unmodified	2390.2172	0.21715042	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.773	86.052	3	0.00076891	49145	160513_QHF_FH_JSI10Kac_6	85.062	47.95			0.084218	0.099415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.084218	0.099415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30240000	28532000	1707400	0	0	0	30240000	28532000	1707400	0	0	0	0	0	0	41390	775	38958	253346	339861	339861			1	
QIWLGLFDDR	0	Unmodified	1261.6455	0.64552182	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	93.561	93.55	2	0.0033819	83275	160511_QHF_FH_JSI11i_3	56.563	48.52			1.2366	1.2232	17.717	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1592	1.0791	NaN	1	0	Median	1.3192	1.3864	NaN	1	0	Median	26599000	10581000	16018000	0	0	0	0	0	0	12869000	5510100	7358900	13730000	5071000	8659000	41391	1774	38959	253347;253348	339862;339863;339864	339862			3	
QIWLSSPSSGPK	1	Unmodified	1285.6667	0.6666512	2743	Q16595	FXN	Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.146	47.164	2	3.3126E-05	40426	160511_QHF_FH_JSI12i_2	96.171	77.86			0.93025	0.915	16.157	4	0	Median	0.9295	0.78494	NaN	1	0	Median	0.72907	0.89839	NaN	1	0	Median	0.931	0.93192	NaN	1	0	Median	1.0586	1.159	NaN	1	0	Median	202600000	109370000	93225000	35499000	22296000	13203000	31164000	20461000	10703000	73663000	34318000	39346000	62272000	32299000	29973000	41392	2743	38960	253349;253350;253351;253352	339865;339866;339867;339868;339869;339870	339865			5	
QIWQNLGLDDTK	1	Unmodified	1429.7201	0.72014333	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	64.914	64.138	2	3.2776E-53	55793	160511_QHF_FH_JSI11i_2	218.11	202.54			0.94077	1.0055	11.203	7	3	Median	1.4334	1.1886	9.2481	2	1	Median	0.90077	1.0728	9.1618	2	1	Median	0.94151	0.95075	4.4244	2	0	Median	0.86469	0.97779	NaN	1	1	Median	1752500000	793090000	959390000	323270000	116810000	206460000	506910000	257030000	249880000	594520000	264310000	330210000	327780000	154940000	172840000	41393	1664	38961	253353;253354;253355;253356;253357;253358;253359;253360;253361	339871;339872;339873;339874;339875;339876;339877;339878;339879;339880	339879			10	
QIWQQYFAAK	1	Unmodified	1281.6506	0.6506072	2965	Q5TC12	ATPAF1	ATP synthase mitochondrial F1 complex assembly factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	2	1	1	2	65.437	61.139	2	9.9627E-07	54090	160511_QHF_FH_JSI10i_2	125.31	100.5			0.831	0.92147	42.439	5	5	Median	0.80816	0.6992	39.037	2	2	Median	1.2607	1.5316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66729	0.74312	33.158	2	2	Median	306290000	150150000	156130000	69491000	34231000	35260000	75886000	30386000	45501000	0	0	0	160910000	85536000	75372000	41394	2965	38962	253362;253363;253364;253365;253366;253367	339881;339882;339883;339884;339885;339886	339884			6	
QIWTLEQPPDEAGSAAVCLR	0	Unmodified	2240.0896	0.089566649	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								1	4	4	5	80.816	80.228	2;3	2.4295E-54	70431	160511_QHF_FH_JSI11i_2	218.16	197.73			1.0445	1.1632	20.861	13	2	Median	1.6011	1.3967	NaN	1	1	Median	1.0141	1.212	20.369	4	0	Median	1.0144	1.0089	15.974	4	0	Median	1.2493	1.3345	9.2428	4	1	Median	501370000	230170000	271200000	12343000	3031200	9311700	135600000	60803000	74793000	186700000	90787000	95917000	166730000	75550000	91180000	41395	2751	38963	253368;253369;253370;253371;253372;253373;253374;253375;253376;253377;253378;253379;253380;253381	339887;339888;339889;339890;339891;339892;339893;339894;339895;339896;339897;339898;339899;339900;339901;339902;339903;339904;339905;339906;339907;339908;339909;339910;339911;339912	339906			26	
QIWTVNEALIQK	1	Unmodified	1441.7929	0.79291434	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.776	71.896	2	9.5302E-05	63032	160511_QHF_FH_JSI11i_2	109.16	84.302			0.97542	1.0012	13.423	4	1	Median	1.1695	1.0252	NaN	1	1	Median	0.64605	0.80135	NaN	1	0	Median	1.0524	1.0939	NaN	1	0	Median	0.90407	0.97785	NaN	1	0	Median	108950000	56821000	52133000	18357000	10160000	8196500	21774000	13613000	8160800	36295000	17271000	19024000	32528000	15776000	16751000	41396	2884	38964	253382;253383;253384;253385	339913;339914;339915;339916	339916			4	
QIYGQNFIPPK	1	Unmodified	1303.6925	0.69247202	2758	Q16720	ATP2B3	Plasma membrane calcium-transporting ATPase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			104.13	104.08	2	0.015793	91865	160511_QHF_FH_JSI9i_2	50.607	30.82			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13449000	13449000	0	6282500	6282500	0	7166100	7166100	0	0	0	0	0	0	0	41397	2758	38965	253386;253387	339917;339918	339917			2	
QIYIYNEK	1	Unmodified	1069.5444	0.5444108	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	8	6		2					2				1	1	2	40.3	34.814	2	0.0013211	29688	160511_QHF_FH_JSI12i_2	91.064	73.596			0.76424	0.84814	15.417	4	0	Median	NaN	NaN	NaN	0	0	Median	0.72028	0.85619	NaN	1	0	Median	0.81088	0.84017	NaN	1	0	Median	0.79964	0.88829	26.265	2	0	Median	138720000	82468000	56254000	0	0	0	3406700	2091200	1315500	78770000	49061000	29709000	56545000	31315000	25230000	41398	3503	38966	253388;253389;253390;253391	339919;339920;339921;339922	339919			4	
QIYLSENPEETAAR	0	Unmodified	1619.7791	0.77911477	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			44.969	44.546	2	0.015844	40059	160511_QHF_FH_JSI10i_1	54.7	29.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41399	5367	38967	253392	339923	339923			1	
QIYLSGLHSWK	1	Unmodified	1330.7034	0.70337105	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	3	3	2	59.283	56.825	2;3	2.7868E-08	31222	160513_QHF_FH_JSI10Kac_6	116.03	95.563			1.1881	1.178	18.389	9	4	Median	1.3291	1.0889	6.4299	3	0	Plateau	1.012	1.1998	2.5908	2	1	Median	1.5934	1.5092	4.9281	2	2	Median	1.1578	1.1877	27.857	2	1	Median	645730000	273040000	372690000	113870000	48325000	65549000	101780000	47123000	54656000	155470000	52834000	102630000	274610000	124760000	149850000	41400	1704	38968	253393;253394;253395;253396;253397;253398;253399;253400;253401;253402;253403	339924;339925;339926;339927;339928;339929;339930;339931;339932;339933;339934;339935	339934			11	
QIYLTDNPEAVAIK	1	Unmodified	1573.8352	0.83517309	3641	Q8NEU8	APPL2	DCC-interacting protein 13-beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	67.927	67.313	2	0.003235	61333	160511_QHF_FH_JSI12i_1	57.019	21.605			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41401	3641	38969	253404	339936	339936			1	
QIYNPPSGK	1	Unmodified	1002.5134	0.51344502	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.37	18.25	2	0.0060185	15559	160511_QHF_FH_JSI11i_1	56.258	26.842			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41402	4575	38970	253405	339937	339937			1	
QIYQTYGFVPSR	0	Unmodified	1457.7303	0.73031409	1632	P48723	HSPA13	Heat shock 70 kDa protein 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.999	56.492	2	0.0072344	48951	160511_QHF_FH_JSI11i_2	51.286	37.477			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41403	1632	38971	253406	339938	339938			1	
QIYVISTVTRPVPLEHYLFTGNSSK	1	Unmodified	2848.5123	0.51232939	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			83.19	77.597	3;4	2.8034E-110	43096	160513_QHF_FH_JSI10Kac_6	234.73	202.75			0.88792	1.0543	16.658	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88792	1.0543	16.658	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	355330000	173210000	182120000	0	0	0	355330000	173210000	182120000	0	0	0	0	0	0	41404	2677	38972	253407;253408	339939;339940;339941	339941			3	
QIYYSDK	1	Unmodified	915.4338	0.43379771	1932;1404	P61024;P33552	CKS1B;CKS2	Cyclin-dependent kinases regulatory subunit 1;Cyclin-dependent kinases regulatory subunit 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1			1	1	1	1	18.477	16.11	2	0.01384	13404	160511_QHF_FH_JSI9i_1	67.169	11.493			0.83886	0.93076	17.417	4	0	Linear	1.1912	0.95142	NaN	1	0	Median	0.78275	0.91055	NaN	1	0	Median	1.2641	1.2512	NaN	1	0	Median	0.79254	0.83642	NaN	1	0	Median	889400000	432640000	456760000	249280000	111300000	137980000	335460000	163370000	172090000	8846500	5333700	3512900	295810000	152630000	143180000	41405	1932;1404	38973	253409;253410;253411;253412	339942;339943;339944;339945	339944			4	
QKEEEEATASERNDADEK	2	Unmodified	2077.9036	0.9035996	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			8.4687	7.994	3	0.0029956	5967	160511_QHF_FH_JSI10i_2	56.959	36.868			0.79869	0.98707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79869	0.98707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19848000	14737000	5110300	0	0	0	19848000	14737000	5110300	0	0	0	0	0	0	41406	2943	38974	253413	339946	339946			1	
QKELLKQYEKQEKK	5	2 Acetyl (K)	1903.0415	0.041477469	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	2	0	0	4			By MS/MS	By MS/MS	16	0									2			1	1	99.023	89.594	2	0.053512	49102	160513_QHF_FH_JSI12Kac_6	39.266	17.61			0.79057	0.77769	30.51	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68147	0.62678	NaN	1	0	Median	0.91714	0.96494	NaN	1	0	Median	297530000	164060000	133470000	0	0	0	0	0	0	59718000	35792000	23926000	237810000	128270000	109540000	41407	3634	38975	253414;253415	339947	339947			0	
QKFDEIFSATR	1	Unmodified	1340.6725	0.67246486	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		48.89	48.367	2;3	0.00089515	42764	160511_QHF_FH_JSI11i_3	53.6	49.427			0.8484	0.91305	8.4026	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78918	0.91305	NaN	1	0	Median	0.91609	0.86231	10.927	2	0	Median	NaN	NaN	NaN	0	0	Median	141510000	74757000	66748000	0	0	0	24299000	14549000	9750300	117210000	60208000	56998000	0	0	0	41408	3896	38976	253416;253417;253418	339948;339949	339949			2	
QKFYWGHK	2	Acetyl (K)	1134.5611	0.56106391	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	44.472	35.122	2;3	0.00023238	19290	160513_QHF_FH_JSI11Kac_6	104.44	90.139			0.71987	0.79141	67.911	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0933	1.2965	NaN	1	0	Median	0.34289	0.3386	NaN	1	0	Median	0.71987	0.79141	NaN	1	0	Median	64818000	37730000	27088000	0	0	0	25193000	13262000	11931000	26184000	16575000	9609700	13441000	7893800	5547000	41409	1798	38977	253419;253420;253421;253422	339950;339951;339952;339953;339954;339955;339956	339950	1813;1815		7	
QKGDVVLQSDHVIETLTK	2	Unmodified	2009.0793	0.079319539	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	60.42	60.283	3	0.00040841	53371	160511_QHF_FH_JSI11i_3	56.081	46.293			0.70544	0.68437	14.314	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81006	0.75726	NaN	1	0	Median	0.61434	0.61849	NaN	1	0	Median	107210000	66715000	40492000	0	0	0	0	0	0	50333000	24239000	26093000	56874000	42476000	14399000	41410	100	38978	253423;253424	339957;339958	339957			1	
QKLEEDAEMK	2	Unmodified	1219.5755	0.57545293	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	2	4	2	15.124	14.547	2;3	3.2016E-05	11730	160511_QHF_FH_JSI12i_2	84.605	53.716			1.0144	1.0539	33.553	9	4	Median	0.76888	0.65439	13.123	2	1	Median	1.0016	1.2334	38.407	2	1	Median	1.1875	1.1884	23.638	3	1	Median	0.9287	1.0514	10.162	2	1	Median	1034400000	530080000	504360000	258070000	142010000	116060000	125110000	65163000	59948000	411660000	186430000	225240000	239590000	136470000	103120000	41411	840	38979	253425;253426;253427;253428;253429;253430;253431;253432;253433;253434	339959;339960;339961;339962;339963;339964;339965;339966;339967	339960			9	
QKLEEDAEMK	2	Oxidation (M)	1235.5704	0.57036755	840	P05455	SSB	Lupus La protein	yes	yes	0	0	1	1	By MS/MS			By MS/MS	2	0		2								1			1	15.429	14.588	2	0.02907	11761	160511_QHF_FH_JSI12i_2	63.283	45.847			0.95245	0.93845	59.316	2	0	Median	0.71697	0.61696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2653	1.4275	NaN	1	0	Median	68150000	35348000	32801000	38333000	20121000	18212000	0	0	0	0	0	0	29817000	15228000	14589000	41412	840	38979	253435;253436	339968	339968			1	
QKLEFLK	2	Unmodified	904.5382	0.53820321	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	33.958	33.212	3	0.011079	27394	160511_QHF_FH_JSI9i_3	50.703	20.518			1.3077	1.1617	81.944	6	2	Median	1.3655	1.1295	NaN	1	0	Median	0.73059	0.83952	150.71	2	1	Median	1.2523	1.1949	NaN	1	0	Median	1.2411	1.241	95.363	2	1	Median	337840000	186630000	151210000	28241000	11450000	16791000	69273000	37272000	32001000	82214000	48849000	33365000	158110000	89057000	69053000	41413	4316	38980	253437;253438;253439;253440;253441;253442	339969;339970;339971;339972	339971			4	
QKLPDLLR	1	Unmodified	981.59712	0.59711507	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		37.035	37.035	3	0.044539	32428	160511_QHF_FH_JSI11i_3	33.263	1.8408			1.3361	1.2411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3361	1.2411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13019000	5609800	7409000	0	0	0	0	0	0	13019000	5609800	7409000	0	0	0	41414	21	38981	253443	339973	339973			1	
QKLYTLQDK	2	Acetyl (K)	1177.6343	0.63428844	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		48.338	37.917	2	2.3604E-07	22440	160513_QHF_FH_JSI11Kac_4	143.04	93.615			0.52745	0.56056	124.69	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1704	1.3538	NaN	1	0	Median	0.2377	0.23211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11873000	8750400	3123000	0	0	0	2389100	1054500	1334600	9484400	7695900	1788500	0	0	0	41415	1650	38982	253444;253445	339974;339975;339976	339976	1667		3	
QKPAQNYDDNFNVNGPGEGVK	2	Unmodified	2290.0614	0.061437643	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	39.38	38.998	3	1.7431E-16	33304	160511_QHF_FH_JSI12i_3	140.95	132.14			0.7992	0.79413	21.821	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0063	1.1881	NaN	1	1	Median	0.9221	0.83994	NaN	1	1	Median	0.78092	0.79413	NaN	1	0	Median	83798000	48397000	35401000	0	0	0	17145000	10309000	6835800	32785000	20600000	12186000	33868000	17488000	16380000	41416	2883	38983	253446;253447;253448;253449	339977;339978;339979;339980	339980			4	
QKPELLNK	2	Unmodified	968.56548	0.56548059	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							1	4	3	2	16.67	16.285	2;3	0.0005194	13257	160511_QHF_FH_JSI11i_3	101.72	71.158			1.9253	1.7649	86.495	9	9	Median	NaN	NaN	NaN	0	0	Median	1.0568	1.2851	95.101	4	4	Median	1.9253	1.7649	81.894	3	3	Median	1.2548	1.2591	138.45	2	2	Median	2942500000	1297200000	1645300000	0	0	0	450390000	227450000	222940000	858770000	338840000	519930000	1633400000	730910000	902460000	41417	5658	38984	253450;253451;253452;253453;253454;253455;253456;253457;253458;253459	339981;339982;339983;339984;339985;339986;339987;339988;339989;339990	339981			10	
QKPITPETAEK	2	Unmodified	1240.6663	0.66631685	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	2.68	4	8	7				1			4	5	5	6	12.484	11.712	2;3	2.2189E-05	8777	160511_QHF_FH_JSI12i_3	95.094	86.581			1.0404	1.3505	13.028	20	0	Linear	1.1811	0.99456	14.777	4	0	Median	0.92826	1.0912	11.666	5	0	Median	1.1451	1.1299	7.5431	5	0	Median	0.86292	0.92938	12.567	6	0	Median	8108100000	4240700000	3867400000	770470000	362030000	408450000	1091700000	539130000	552610000	2524100000	1185800000	1338200000	3721900000	2153700000	1568100000	41418	1924	38985	253460;253461;253462;253463;253464;253465;253466;253467;253468;253469;253470;253471;253472;253473;253474;253475;253476;253477;253478;253479	339991;339992;339993;339994;339995;339996;339997;339998;339999;340000;340001;340002;340003;340004;340005;340006;340007;340008;340009;340010;340011	340010			21	
QKPITPETAEK	2	Acetyl (K)	1282.6769	0.67688153	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.4	0.49					3	2					1	2	2	36.297	27.61	2	0.0054199	16136	160513_QHF_FH_JSI11Kac_3	63.283	34.885			0.41646	0.4118	44.487	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89039	1.0628	NaN	1	0	Median	0.38321	0.37755	12.28	2	0	Median	0.44776	0.47386	21.406	2	0	Median	33521000	21944000	11577000	0	0	0	5610700	3047200	2563500	19046000	13305000	5741000	8863800	5591100	3272600	41419	1924	38985	253480;253481;253482;253483;253484	340012;340013;340014;340015;340016;340017	340014	1934		6	
QKPLDFSTNQK	2	Acetyl (K)	1346.683	0.68302954	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	52.041	42.716	2	0.012294	22466	160513_QHF_FH_JSI10Kac_3	56.563	26.754			0.88601	1.1203	10.653	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85461	1.0009	NaN	1	0	Median	0.88601	0.90547	NaN	1	0	Median	1.0565	1.1203	NaN	1	0	Median	22348000	12112000	10236000	0	0	0	7201200	4602300	2599000	6075100	2928900	3146100	9072100	4581100	4491000	41420	560	38986	253485;253486;253487	340018;340019	340019	292		2	
QKPMNVGLSETQNGGMSQEAVGNIK	2	Unmodified	2616.2636	0.26358462	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	52.14	51.649	3	1.4867E-28	45669	160511_QHF_FH_JSI11i_3	160.57	153.21			0.82163	0.84894	20.159	5	3	Median	0.87547	0.74437	NaN	1	0	Median	0.68365	0.84894	NaN	1	1	Median	1.003	0.93885	NaN	1	0	Median	0.66896	0.70011	30.902	2	2	Median	234830000	136450000	98379000	28972000	14396000	14576000	27997000	17978000	10019000	133880000	74790000	59092000	43978000	29287000	14691000	41421	5042	38987	253488;253489;253490;253491;253492	340020;340021;340022;340023;340024;340025;340026;340027	340020			8	
QKPQEVPQENGMEDPSISFSK	2	Unmodified	2374.1111	0.11108995	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1.4	0.49	3	2										3	2	51.881	51.346	3	5.0598E-05	46445	160511_QHF_FH_JSI11i_1	63.165	49.573			1.495	1.5293	63.507	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7135	0.67687	60.31	2	2	Median	1.495	1.5293	NaN	1	0	Median	73211000	36090000	37120000	0	0	0	0	0	0	46879000	26653000	20226000	26332000	9437800	16894000	41422	153	38988	253493;253494;253495;253496;253497	340028;340029;340030;340031;340032;340033	340028			6	
QKPSNTEDFIEDIVK	2	Unmodified	1761.8785	0.87849447	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	71.188	70.71	2;3	3.0548E-07	62736	160511_QHF_FH_JSI11i_3	113.59	97.951			0.78274	0.87537	23.222	9	3	Median	0.7304	0.64457	NaN	1	1	Median	0.70817	0.87147	0.63069	2	1	Median	1.0149	0.97067	38.283	3	1	Median	0.88025	0.90522	10.225	3	0	Median	1416700000	710820000	705930000	28030000	17357000	10673000	217670000	125200000	92472000	627050000	286710000	340340000	544000000	281550000	262440000	41423	1579	38989	253498;253499;253500;253501;253502;253503;253504;253505;253506;253507	340034;340035;340036;340037;340038;340039;340040;340041;340042;340043;340044;340045;340046;340047;340048;340049	340038			16	
QKPVLEEQVIK	2	Unmodified	1309.7606	0.76055158	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	35.598	34.86	2;3	5.8805E-10	29354	160511_QHF_FH_JSI12i_3	117.98	93.684			0.79762	0.84233	38.943	8	2	Median	0.95045	0.82679	19.336	2	1	Median	0.65304	0.80348	7.9577	2	0	Median	1.2344	1.1856	86.482	2	1	Median	0.95009	1.0073	26.572	2	0	Median	720300000	309900000	410410000	118470000	57816000	60650000	146180000	72181000	74001000	141610000	52980000	88628000	314050000	126920000	187130000	41424	3328	38990	253508;253509;253510;253511;253512;253513;253514;253515	340050;340051;340052;340053;340054;340055;340056	340055			7	
QKPVLQK	2	Unmodified	839.52289	0.52288749	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	8.1443	7.8253	3	0.0079859	5624	160511_QHF_FH_JSI10i_3	58.167	29.655			1.9076	1.8002	79.212	5	4	Median	3.4652	2.7905	NaN	1	1	Median	0.82069	0.95869	123.92	2	2	Median	1.9076	1.8002	NaN	1	1	Median	0.92944	0.94145	NaN	1	0	Median	1887400000	945170000	942200000	271880000	99667000	172220000	592240000	340240000	252000000	274530000	119560000	154970000	748710000	385700000	363010000	41425	2185	38991	253516;253517;253518;253519;253520	340057;340058;340059;340060;340061;340062	340058			6	
QKPVQTFTEEK	2	Unmodified	1333.6878	0.68778057	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								3	2	2	16.573	16.292	2;3	2.3214E-05	13279	160511_QHF_FH_JSI11i_3	83.314	71.448			0.72924	0.71291	31.856	6	1	Linear	NaN	NaN	NaN	0	0	Median	1.1765	1.4215	4.0288	2	1	Median	0.9276	0.87165	7.5745	2	0	Median	0.70006	0.71914	7.9974	2	0	Median	725050000	392010000	333040000	0	0	0	82497000	41277000	41220000	255160000	122110000	133050000	387390000	228620000	158770000	41426	5130	38992	253521;253522;253523;253524;253525;253526;253527	340063;340064;340065;340066;340067;340068;340069;340070;340071;340072	340063			10	
QKQEEFK	2	Unmodified	935.47125	0.47124585	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	5.6909	5.1068	3	0.044948	3114	160511_QHF_FH_JSI12i_2	34.173	23.299			1.0803	1.2011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0803	1.2011	NaN	1	1	Median	124680000	63620000	61064000	0	0	0	0	0	0	0	0	0	124680000	63620000	61064000	41427	454	38993	253528	340073	340073			1	
QKQQELR	1	Unmodified	928.50903	0.50902834	5822				yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			3.97	3.4991	3	0.037492	1642	160511_QHF_FH_JSI9i_3	32.61	8.4551	+		1.7352	1.4509	7.9864	4	0	Linear	1.7352	1.4509	0	2	0	Median	1.0639	1.2635	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	392250000	175700000	216550000	204910000	78495000	126410000	187340000	97206000	90132000	0	0	0	0	0	0	41428	5822	38994	253529;253530;253531;253532	340074;340075;340076	340076			3	
QKTEDEVLTSK	2	Unmodified	1276.6511	0.65106071	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		13.917	13.694	2;3	0.014137	11325	160511_QHF_FH_JSI10i_2	39.006	30.261			0.98679	0.98977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98679	0.98977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33881000	15500000	18381000	0	0	0	0	0	0	33881000	15500000	18381000	0	0	0	41429	4349	38995	253533;253534	340077;340078;340079	340079			3	
QKVDSLLENLEK	2	Unmodified	1414.7668	0.76675917	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								2	2	3	58.149	57.561	2;3	1.9434E-15	49489	160511_QHF_FH_JSI12i_3	153.38	126.71			0.79345	0.82439	19.208	7	0	Median	NaN	NaN	NaN	0	0	Median	0.80738	0.98171	11.129	2	0	Median	0.87841	0.84446	16.381	2	0	Median	0.80419	0.82439	19.129	3	0	Plateau	904470000	471690000	432790000	0	0	0	171750000	82814000	88937000	226700000	100740000	125970000	506020000	288140000	217880000	41430	882	38996	253535;253536;253537;253538;253539;253540;253541	340080;340081;340082;340083;340084;340085;340086;340087;340088	340085			9	
QKVEEELNR	1	Unmodified	1143.5884	0.58840088	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1				By MS/MS	2.5	0.5		1	1										2	11.547	11.224	2	0.0063952	8447	160511_QHF_FH_JSI12i_3	71.349	45.79			0.98176	1.0296	9.5216	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98176	1.0296	9.5216	2	0	Median	60846000	30671000	30175000	0	0	0	0	0	0	0	0	0	60846000	30671000	30175000	41431	1085	38997	253542;253543	340089;340090	340089			2	
QKVEGTEPTTAFNLFVGNLNFNK	2	Unmodified	2567.302	0.30200227	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	6.1		2	5						3	3	4	2	1	96.657	94.216	3;4	7.5981E-38	86467	160511_QHF_FH_JSI12i_3	183.65	180.49			0.88233	0.92052	25.065	10	2	Median	0.66235	0.56343	35.329	3	1	Plateau	0.87372	1.0162	19.148	4	1	Median	0.88703	0.82963	13.511	2	0	Median	0.70436	0.71173	NaN	1	0	Median	2180500000	1205300000	975160000	242770000	125070000	117710000	831810000	451910000	379900000	432290000	235380000	196910000	673580000	392940000	280640000	41432	1154	38998	253544;253545;253546;253547;253548;253549;253550;253551;253552;253553	340091;340092;340093;340094;340095;340096;340097;340098;340099;340100;340101;340102;340103;340104;340105;340106	340104			15	
QKVENLFNEK	2	Unmodified	1247.651	0.65100113	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	29.935	29.914	2;3	0.012576	25763	160511_QHF_FH_JSI11i_3	45.661	37.261			0.74532	0.74403	99.14	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1563	1.9535	115.96	2	1	Median	0.74532	0.74403	NaN	1	0	Median	120070000	58728000	61343000	0	0	0	0	0	0	66540000	25010000	41530000	53532000	33718000	19813000	41433	2087	38999	253554;253555;253556	340107;340108	340107			2	
QKVYNPR	1	Acetyl (K)	945.50321	0.50321468	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	20.9	12.582	2	5.1438E-05	8765	160513_QHF_FH_JSI12Kac_4	128.38	90.249			0.71046	0.69774	22.412	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74151	0.86891	NaN	1	0	Median	0.71046	0.69764	NaN	1	0	Median	0.9926	1.0922	NaN	1	0	Median	35681000	18971000	16710000	0	0	0	11883000	6057500	5825800	12829000	6864500	5964900	10969000	6049300	4919400	41434	300	39000	253557;253558;253559	340109;340110;340111	340111	161		3	
QKWEQIEGNSK	2	Unmodified	1345.6626	0.66262845	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			5								1	2	2	18.387	18.172	2;3	3.916E-06	15097	160511_QHF_FH_JSI11i_3	113.63	92.257			0.72196	0.78258	20.484	5	0	Median	NaN	NaN	NaN	0	0	Median	0.6797	0.78258	NaN	1	0	Median	0.67974	0.6309	8.0363	2	0	Median	0.933	0.9403	4.3921	2	0	Median	622220000	334560000	287660000	0	0	0	32361000	19072000	13289000	312540000	169000000	143540000	277310000	146490000	130820000	41435	2294	39001	253560;253561;253562;253563;253564	340112;340113;340114;340115;340116	340112			5	
QKYTDMAKEYKDAFMKANPGYK	5	2 Acetyl (K)	2710.2771	0.27710942	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	2	0	0	4			By MS/MS		16	0									1			1		95.505	86.105	2	0.028539	48742	160513_QHF_FH_JSI11Kac_6	47.545	27.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30303000	30303000	0	0	0	0	0	0	0	30303000	30303000	0	0	0	0	41436	3816	39002	253565	340117	340117			1	
QLAAEEER	0	Unmodified	944.45632	0.45632407	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	9.8105	9.4398	2	0.0051411	7331	160511_QHF_FH_JSI12i_1	66.546	24.259			1.2571	1.2962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2571	1.2962	NaN	1	0	Median	80432000	39242000	41190000	0	0	0	0	0	0	0	0	0	80432000	39242000	41190000	41437	2636	39003	253566	340118	340118			1	
QLAAENR	0	Unmodified	800.41407	0.41406533	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	1	3	2	6.3181	4.9349	2	0.0014441	3789	160511_QHF_FH_JSI12i_2	120.62	55.845			1.1206	1.2255	10.524	7	0	Median	1.6274	1.3594	NaN	1	0	Median	1.0149	1.2255	NaN	1	0	Median	1.1622	1.1583	11.166	3	0	Plateau	1.0896	1.182	7.7034	2	0	Median	2830600000	1457700000	1372800000	208790000	94178000	114610000	621160000	320160000	301000000	1199800000	648140000	551710000	800790000	395260000	405530000	41438	1436	39004	253567;253568;253569;253570;253571;253572;253573	340119;340120;340121;340122;340123;340124;340125;340126;340127	340121			9	
QLAAENRLTEMETLQSQLMAEK	1	Unmodified	2533.2516	0.25162295	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								1	2			82.877	82.219	3	2.7035E-18	73144	160511_QHF_FH_JSI10i_2	140.17	126.44			1.087	1.2754	28.376	3	2	Median	1.087	0.95379	NaN	1	0	Median	1.2065	1.4648	19.577	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133560000	57279000	76286000	33311000	14080000	19231000	100250000	43199000	57055000	0	0	0	0	0	0	41439	1436	39005	253574;253575;253576	340128;340129;340130;340131	340131			4	
QLAAFLEGFYEIIPK	1	Unmodified	1737.9342	0.93415885	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.06		3							1	1	1	1	1	101.48	99.066	2	1.8743E-52	48697	160513_QHF_FH_JSI12Kac_6	231.06	198.12			0.92474	0.88373	44.396	4	1	Median	0.84534	0.73408	NaN	1	0	Median	0.43065	0.54311	NaN	1	0	Median	1.5228	1.5087	NaN	1	1	Median	1.0116	1.0639	NaN	1	0	Median	244460000	110180000	134270000	48866000	26038000	22828000	40838000	22421000	18418000	82783000	27443000	55340000	71972000	34283000	37688000	41440	3290	39006	253577;253578;253579;253580	340132;340133;340134;340135	340135			3	
QLAALGQTEPLPAEAPWAR	0	Unmodified	2018.0585	0.058524517	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.792	83.964	2	1.0037E-17	72470	160511_QHF_FH_JSI12i_2	155.42	122.81			1.0125	1.0762	6.5271	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0093	1.0277	NaN	1	0	Median	1.0157	1.1271	NaN	1	0	Median	36012000	19691000	16321000	0	0	0	0	0	0	20315000	10936000	9379400	15697000	8755600	6941200	41441	3915	39007	253581;253582;253583;253584	340136;340137;340138;340139;340140;340141	340136			6	
QLAALKQQLVASHLEK	2	Acetyl (K)	1818.0363	0.036332512	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.797	69.483	3	0.00050188	38059	160513_QHF_FH_JSI11Kac_6	127.83	113.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33394000	33394000	0	0	0	0	0	0	0	33394000	33394000	0	0	0	0	41442	2441	39008	253585	340142	340142	2478		1	
QLADETLLK	1	Unmodified	1029.5706	0.57062555	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	45.089	44.305	2	8.0331E-12	39734	160511_QHF_FH_JSI10i_1	166.52	79.683			0.97284	1.0173	14.325	6	0	Median	1.1619	0.96122	29.686	2	0	Median	0.82426	1.0104	3.8433	2	0	Median	1.0222	0.99688	NaN	1	0	Median	1.0427	1.1046	NaN	1	0	Median	2989300000	1399700000	1589600000	700390000	319340000	381050000	717020000	388090000	328930000	790860000	347780000	443080000	781080000	344540000	436550000	41443	1180	39009	253586;253587;253588;253589;253590;253591	340143;340144;340145;340146;340147	340146			5	
QLAEAHAQAK	1	Unmodified	1065.5567	0.55670682	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		7.5016	-2.0105	3	0.038462	2796	160513_QHF_FH_JSI11Kac_5	29.544	21.324			1.9845	1.9038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9845	1.9038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2452600	931660	1520900	0	0	0	0	0	0	2452600	931660	1520900	0	0	0	41444	2636	39010	253592	340148	340148			1	
QLAEDFLK	1	Unmodified	962.5073	0.50729701	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							2	2	4	2	53.535	52.831	2	0.00017471	46493	160511_QHF_FH_JSI9i_2	122.74	78.021			1	1.0106	12.414	10	3	Median	1.0408	0.86734	13.938	2	0	Median	0.85795	1.0159	2.1672	2	0	Median	1.0831	1.0387	14.08	4	3	Median	0.95395	1.0313	14.143	2	0	Median	2693500000	1268300000	1425100000	388820000	164530000	224290000	572650000	294190000	278460000	1144400000	530690000	613720000	587580000	278920000	308660000	41445	1128	39011	253593;253594;253595;253596;253597;253598;253599;253600;253601;253602	340149;340150;340151;340152;340153;340154;340155;340156;340157;340158;340159;340160;340161;340162;340163;340164	340160			16	
QLAEEDAAR	0	Unmodified	1001.4778	0.47778779	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.213	10.829	2	0.00013222	8609	160511_QHF_FH_JSI10i_1	94.909	19.338			1.0701	1.0964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0701	1.0964	NaN	1	1	Median	97564000	50507000	47057000	0	0	0	0	0	0	0	0	0	97564000	50507000	47057000	41446	2636	39012	253603;253604	340165;340166	340166			2	
QLAEEDLAQQR	0	Unmodified	1299.6419	0.64189301	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	4										3		1	29.258	28.874	2	1.7645E-09	25834	160511_QHF_FH_JSI12i_1	132.88	92.808			0.79493	0.93184	34.595	4	2	Median	NaN	NaN	NaN	0	0	Median	0.76451	0.9082	28.916	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2723	1.3084	NaN	1	0	Median	253080000	138330000	114740000	0	0	0	201090000	120240000	80852000	0	0	0	51987000	18097000	33890000	41447	2636	39013	253605;253606;253607;253608	340167;340168;340169;340170	340167			3	
QLAEEEPMDTDQGNSMLSAIQSEVAK	1	Unmodified	2820.2794	0.27935385	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	92.932	92.56	3	5.9741E-10	84211	160511_QHF_FH_JSI12i_1	76.471	73.822			1.0026	0.98787	19.511	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1933	1.134	NaN	1	0	Median	0.84237	0.86056	NaN	1	1	Median	47712000	25717000	21995000	0	0	0	0	0	0	21979000	7251100	14728000	25733000	18466000	7267200	41448	5663	39014	253609;253610;253611	340171;340172;340173;340174;340175	340174			5	
QLAEEETK	1	Unmodified	946.46074	0.46074075	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.17	8.8045	2	0.0020115	6708	160511_QHF_FH_JSI12i_1	93.267	41.413			0.9913	0.9962	23.924	4	4	Median	1.1884	0.98408	NaN	1	1	Median	1.0206	1.217	NaN	1	1	Median	0.70073	0.68639	NaN	1	1	Median	0.96282	1.0085	NaN	1	1	Median	804650000	505710000	298940000	190820000	113320000	77502000	183660000	103880000	79787000	188290000	129610000	58682000	241870000	158900000	82967000	41449	3290	39015	253612;253613;253614;253615	340176;340177;340178;340179	340177			4	
QLAEEQK	1	Unmodified	844.42905	0.42904669	3681	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.5251	6.179	2	0.0061558	4329	160511_QHF_FH_JSI12i_1	92.187	4.9032			0.85717	0.92032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85717	0.92032	NaN	1	0	Median	1768000000	872150000	895900000	0	0	0	0	0	0	0	0	0	1768000000	872150000	895900000	41450	3681	39016	253616	340180	340180			1	
QLAEGTAQQR	0	Unmodified	1100.5574	0.5574351	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	1	2	2	9.1303	7.5667	2	4.9218E-11	5941	160511_QHF_FH_JSI9i_1	147.78	57.408			1.0167	1.0974	19.522	6	4	Median	0.88061	0.72133	NaN	1	0	Median	0.91543	1.0813	NaN	1	1	Median	1.1872	1.1553	5.1761	2	1	Median	1.0014	1.0649	17.34	2	2	Median	508120000	268700000	239420000	106150000	56286000	49859000	112890000	63149000	49739000	102220000	51856000	50366000	186860000	97413000	89452000	41451	2636	39017	253617;253618;253619;253620;253621;253622	340181;340182;340183;340184;340185;340186;340187	340187			7	
QLAELAISK	1	Unmodified	971.56515	0.56514624	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		45.465	44.786	2	0.00057916	39553	160511_QHF_FH_JSI10i_2	88.392	62.008			1.3739	1.4847	8.2756	2	2	Median	NaN	NaN	NaN	0	0	Median	1.166	1.4004	NaN	1	1	Median	1.6189	1.5742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252510000	123800000	128700000	0	0	0	147930000	74335000	73595000	104580000	49469000	55110000	0	0	0	41452	1438	39018	253623;253624;253625	340188;340189;340190	340190			3	
QLAGEDMEISVK	1	Unmodified	1318.6439	0.64386684	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	51.23	50.47	2	0.00023199	45943	160511_QHF_FH_JSI12i_1	78.488	59.708			0.83357	0.67357	52.26	3	0	Median	0.83357	0.67357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36682	0.35394	NaN	1	0	Median	0.95028	0.99642	NaN	1	0	Median	621170000	409340000	211830000	175660000	114540000	61116000	0	0	0	213570000	167720000	45850000	231950000	127080000	104860000	41453	871	39019	253626;253627;253628	340191;340192;340193;340194	340192			4	
QLAGILQVPLEER	0	Unmodified	1464.83	0.83002813	3342	Q86VN1	VPS36	Vacuolar protein-sorting-associated protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.436	81.674	2	3.6919E-07	72706	160511_QHF_FH_JSI10i_2	164.65	125.35			0.80559	0.79662	18.15	4	3	Median	0.76603	0.66381	NaN	1	1	Median	0.5769	0.68821	NaN	1	0	Median	0.9206	0.92708	NaN	1	1	Median	0.84721	0.92211	NaN	1	1	Median	83209000	50277000	32931000	14379000	10620000	3759000	26349000	17946000	8403100	24612000	12099000	12514000	17868000	9612800	8255600	41454	3342	39020	253629;253630;253631;253632	340195;340196;340197;340198	340198			4	
QLAITHHVLSGK	1	Unmodified	1302.7408	0.74081919	4692	Q9H3H3	C11orf68	UPF0696 protein C11orf68	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				29.924	28.531	2;3	0.0012304	23304	160511_QHF_FH_JSI9i_3	66.595	51.335			1.7117	1.3638	NaN	1	1	Median	1.7117	1.3638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53040000	19449000	33591000	53040000	19449000	33591000	0	0	0	0	0	0	0	0	0	41455	4692	39021	253633;253634	340199;340200	340200			2	
QLALDHFK	1	Unmodified	970.52362	0.52361577	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	37.644	36.725	3	0.00097743	31087	160511_QHF_FH_JSI11i_2	69.598	52.822			1.1895	1.1855	37.608	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.51446	0.63624	NaN	1	1	Median	1.1895	1.1855	NaN	1	0	Median	1.1586	1.2521	NaN	1	0	Median	120080000	60153000	59928000	0	0	0	30863000	21531000	9331700	46265000	23505000	22760000	42953000	15117000	27836000	41456	3036	39022	253635;253636;253637	340201;340202;340203;340204;340205	340203			5	
QLALDHFKK	2	Unmodified	1098.6186	0.61857879	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							3	4	2	4	28.526	27.827	2;3	0.00013262	23588	160511_QHF_FH_JSI11i_3	78.655	65.302			1.0188	1.0085	90.396	10	8	Median	2.6756	2.2881	86.49	3	2	Median	2.7023	3.1136	11.718	2	2	Median	0.86602	0.81597	NaN	1	0	Median	0.60255	0.59593	65.101	4	4	Median	1363400000	719130000	644300000	123210000	52514000	70701000	186560000	64137000	122430000	227730000	123020000	104720000	825920000	479460000	346460000	41457	3036	39023	253638;253639;253640;253641;253642;253643;253644;253645;253646;253647;253648;253649;253650	340206;340207;340208;340209;340210;340211;340212;340213;340214;340215;340216;340217;340218;340219	340206			14	
QLALEDAK	1	Unmodified	886.476	0.47599688	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	28.048	25.898	2	0.0023898	22496	160511_QHF_FH_JSI11i_1	80.455	36.596			0.9361	0.94842	8.6568	5	0	Median	1.1216	0.92964	NaN	1	0	Median	0.91941	1.0938	NaN	1	0	Median	0.9361	0.93123	NaN	1	0	Median	0.97921	1.0205	10.364	2	0	Median	462190000	246300000	215880000	76509000	38395000	38114000	132720000	68377000	64341000	133520000	76608000	56911000	119440000	62922000	56517000	41458	3132	39024	253651;253652;253653;253654;253655	340220;340221;340222;340223	340220			4	
QLALETIDINK	1	Unmodified	1256.6976	0.69761697	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	5.2	5.78	4	3					3			2	3	2	3	68.449	64.701	2	2.0008E-14	59309	160511_QHF_FH_JSI12i_1	155.06	128.1			0.99903	0.96812	23.695	9	1	Median	1.3014	1.1074	19.007	2	1	Median	0.62579	0.73587	10.684	3	0	Median	0.99903	0.98132	NaN	1	0	Median	1.2304	1.311	18.664	3	0	Median	461420000	249360000	212070000	91539000	39592000	51947000	140890000	92305000	48583000	121180000	67003000	54180000	107820000	50458000	57357000	41459	2672	39025	253656;253657;253658;253659;253660;253661;253662;253663;253664;253665	340224;340225;340226;340227;340228;340229;340230;340231;340232	340225			7	
QLALETIDINKDPYFMK	2	Unmodified	2038.0445	0.044513937	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.237	85.557	3	1.6992E-06	75344	160511_QHF_FH_JSI9i_2	113.29	96.536			1.0391	1.0559	13.38	4	0	Median	1.0403	0.86904	NaN	1	0	Median	0.85294	1.0577	NaN	1	0	Median	1.0378	1.0541	NaN	1	0	Median	1.0771	1.2021	NaN	1	0	Median	377070000	196250000	180810000	64000000	30320000	33680000	80408000	53147000	27261000	124930000	52211000	72717000	107730000	60574000	47155000	41460	2672	39026	253666;253667;253668;253669	340233;340234;340235;340236;340237;340238;340239;340240;340241	340237			9	
QLALEVIVTLSETAAAMLR	0	Unmodified	2028.1289	0.12891227	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0			By MS/MS		11	0				2								2		104.62	95.443	2;3	2.8143E-56	34705	160513_QHF_FH_JSI11Kac_1	194.48	173.17			0.59889	0.58183	7.2588	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59889	0.58183	7.2588	2	0	Median	NaN	NaN	NaN	0	0	Median	29615000	16770000	12845000	0	0	0	0	0	0	29615000	16770000	12845000	0	0	0	41461	127	39027	253670;253671	340242;340243	340242			1	
QLALEVIVTLSETAAAMLRK	1	Unmodified	2156.2239	0.22387529	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			101.71	94.258	3	1.6015E-71	56601	160513_QHF_FH_JSI10Kac_6	211.33	188.9			0.75622	0.76112	47.86	2	0	Median	0.63258	0.5426	NaN	1	0	Median	0.90402	1.0676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	343380000	215650000	127730000	118870000	74032000	44833000	224520000	141620000	82901000	0	0	0	0	0	0	41462	127	39028	253672;253673	340244;340245;340246	340245			3	
QLALLKTNSAVR	1	Acetyl (K)	1354.7932	0.79324869	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0.707							1	2	1		1	3		68.493	57.962	2	6.8874E-07	31214	160513_QHF_FH_JSI11Kac_6	129.7	39.073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27323000	25747000	1576300	0	0	0	1576300	0	1576300	25747000	25747000	0	0	0	0	41463	2391	39029	253674;253675;253676;253677	340247;340248;340249;340250	340247	2462		4	
QLALWNPK	1	Unmodified	968.54435	0.54435122	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		55.325	54.812	2	0.004365	47479	160511_QHF_FH_JSI11i_2	76.134	46.985			1.2867	1.2923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2867	1.2923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132020000	61763000	70257000	0	0	0	0	0	0	132020000	61763000	70257000	0	0	0	41464	5411	39030	253678	340251	340251			1	
QLANMVNNLK	1	Unmodified	1143.607	0.60702783	1160	P19474	TRIM21	E3 ubiquitin-protein ligase TRIM21	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.697	45.301	2	0.0036483	38759	160511_QHF_FH_JSI12i_2	58.815	25.457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41465	1160	39031	253679	340252	340252			1	
QLANQKQQHLAFR	1	Acetyl (K)	1622.8641	0.86412223	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		43.51	34.382	3	1.9431E-05	19084	160513_QHF_FH_JSI10Kac_6	90.697	77.578			0.61582	0.66941	113.53	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2493	1.4939	NaN	1	0	Median	0.30355	0.29995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22696000	13938000	8757700	0	0	0	9613000	4518800	5094200	13083000	9419400	3663500	0	0	0	41466	2795	39032	253680;253681	340253;340254	340254	2691		2	
QLANQTVGR	0	Unmodified	985.53049	0.53049207	3029	Q68EM7;Q17R89	ARHGAP17;ARHGAP44	Rho GTPase-activating protein 17;Rho GTPase-activating protein 44	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.67	0.471	1	2								1	1		1	10.781	10.104	2	0.0027769	6154	160511_QHF_FH_JSI12i_2	63.21	15.294			0.48331	0.54072	35.178	3	2	Median	1.1674	0.95068	NaN	1	1	Median	0.42224	0.49825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48331	0.54072	NaN	1	0	Median	101770000	62189000	39578000	13896000	5240100	8656400	17364000	12481000	4882700	0	0	0	70507000	44468000	26039000	41467	3029	39033	253682;253683;253684	340255;340256;340257	340255			3	
QLAPIWDK	1	Unmodified	969.52837	0.5283668	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.29	3	4	2				2	4		2	5	4	4	58.917	53.936	2	0.00024549	46400	160511_QHF_FH_JSI12i_2	116.73	102.57			0.9361	0.89074	24.508	14	3	Median	1.0839	0.91622	14.323	2	0	Median	0.6867	0.81799	39.439	4	1	Median	0.9361	0.93206	22.04	4	0	Median	0.87445	0.94348	20.711	4	2	Median	6861800000	3511000000	3350700000	977770000	455050000	522720000	1794100000	1062200000	731950000	2625000000	1248400000	1376600000	1464800000	745380000	719430000	41468	867	39034	253685;253686;253687;253688;253689;253690;253691;253692;253693;253694;253695;253696;253697;253698;253699	340258;340259;340260;340261;340262;340263;340264;340265;340266;340267;340268;340269;340270;340271;340272;340273;340274;340275;340276;340277;340278;340279;340280;340281;340282;340283;340284	340264			27	
QLAPIWDKLGETYK	2	Acetyl (K)	1702.893	0.89302232	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		87.973	78.643	2	0.00024804	43903	160513_QHF_FH_JSI11Kac_6	131.69	75.287			3.8346	3.7347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8346	3.7347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96621000	29093000	67527000	0	0	0	0	0	0	96621000	29093000	67527000	0	0	0	41469	867	39035	253700	340285	340285	573		1	
QLAQIDGTLSTIEFQR	0	Unmodified	1818.9476	0.94757708	4708	Q9H444	CHMP4B	Charged multivesicular body protein 4b	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										3	1	3	80.478	80.139	2;3	1.4492E-07	72661	160511_QHF_FH_JSI10i_1	139.78	116.4			0.66702	0.74589	29.191	7	7	Median	NaN	NaN	NaN	0	0	Median	0.54245	0.74589	12.404	3	3	Plateau	0.56915	0.54637	NaN	1	1	Median	1.0607	1.129	26.172	3	3	Median	217610000	119840000	97774000	0	0	0	107230000	62700000	44533000	32078000	20766000	11312000	78300000	36371000	41929000	41470	4708	39036	253701;253702;253703;253704;253705;253706;253707	340286;340287;340288;340289;340290;340291;340292	340290			7	
QLAQYHAK	1	Unmodified	957.50321	0.50321468	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.59		10	5						4	3	5	7	4	9.2001	7.424	2;3	0.00035431	5706	160511_QHF_FH_JSI12i_3	111.04	111.04			1.2173	1.0179	41.971	15	6	Median	1.0212	0.87816	11.034	3	0	Median	0.63201	0.76789	47.268	4	2	Median	1.2255	1.1918	55.173	5	3	Median	1.398	1.4135	18.912	3	1	Median	3031800000	1499900000	1531800000	327040000	135220000	191820000	491960000	287820000	204140000	1139700000	576450000	563240000	1073100000	500410000	572650000	41471	2370	39037	253708;253709;253710;253711;253712;253713;253714;253715;253716;253717;253718;253719;253720;253721;253722;253723;253724;253725;253726	340293;340294;340295;340296;340297;340298;340299;340300;340301;340302;340303;340304;340305;340306;340307;340308;340309;340310;340311;340312;340313;340314	340312			22	
QLASEDISHITPTQGFNIK	1	Unmodified	2098.0695	0.069483134	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.33	1	5	1					1		1	1	3	3	70.54	68.377	2;3	2.2791E-18	60456	160511_QHF_FH_JSI9i_2	155.94	145.44			1.0154	1.0083	11.611	7	2	Median	1.2001	1.0215	NaN	1	0	Median	0.7557	0.91274	NaN	1	0	Median	1.0123	1.0262	7.7801	2	0	Median	1.0154	1.0083	16.412	3	2	Median	798840000	422330000	376510000	169440000	77540000	91898000	157550000	99039000	58508000	230790000	110910000	119890000	241060000	134840000	106210000	41472	1451	39038	253727;253728;253729;253730;253731;253732;253733;253734	340315;340316;340317;340318;340319;340320;340321;340322;340323;340324;340325	340316			11	
QLASGLLLVTGPLVLNR	0	Unmodified	1763.0669	0.066904359	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.56		3	7						7	3	6	4	4	97.84	93.937	2;3	4.0001E-74	84112	160511_QHF_FH_JSI10i_3	277.31	265.25			0.86534	0.91237	7.7245	15	15	Median	1.1583	0.96563	1.034	3	3	Median	0.78568	0.9215	4.2104	5	5	Median	0.87215	0.82773	4.1172	4	4	Median	0.86273	0.91237	11.086	3	3	Median	9085300000	5091200000	3994100000	1462400000	677710000	784660000	3580900000	2102000000	1478900000	2447300000	1355200000	1092100000	1594800000	956290000	638510000	41473	2196	39039	253735;253736;253737;253738;253739;253740;253741;253742;253743;253744;253745;253746;253747;253748;253749;253750;253751	340326;340327;340328;340329;340330;340331;340332;340333;340334;340335;340336;340337;340338;340339;340340;340341;340342	340328			17	
QLASGLLLVTGPLVLNRVPLR	0	Unmodified	2228.3733	0.37325714	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			93.163	85.833	3	0.00034559	47706	160513_QHF_FH_JSI9Kac_6	76.492	61.879			1.5756	1.5766	50.231	2	2	Median	2.5971	2.2489	NaN	1	1	Median	0.95585	1.1052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133520000	53510000	80014000	47336000	12518000	34819000	86188000	40993000	45195000	0	0	0	0	0	0	41474	2196	39040	253752;253753	340343;340344	340343			2	
QLASGLLLVTGPLVLNRVPLRR	0	Unmodified	2384.4744	0.47436816	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	2	By MS/MS				16	0									1	1				88.836	80.167	4	5.4471E-07	44525	160513_QHF_FH_JSI9Kac_6	81.665	73.673			1.6797	1.4268	NaN	1	0	Median	1.6797	1.4268	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158930000	60483000	98449000	158930000	60483000	98449000	0	0	0	0	0	0	0	0	0	41475	2196	39041	253754	340345	340345			1	
QLASVILK	1	Unmodified	870.55385	0.55385327	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	47.676	46.856	2	0.0037325	40985	160511_QHF_FH_JSI11i_3	70.856	30.758			1.1142	1.117	31.565	7	0	Median	1.2247	1.0704	NaN	1	0	Median	0.99918	1.1946	9.4991	2	0	Median	1.2987	1.2515	45.825	2	0	Median	1.221	1.2608	59.815	2	0	Median	948930000	464030000	484900000	125040000	58106000	66930000	219470000	102240000	117240000	331270000	166440000	164830000	273150000	137240000	135910000	41476	4193	39042	253755;253756;253757;253758;253759;253760;253761	340346;340347;340348;340349;340350;340351;340352;340353;340354	340346			9	
QLATKAAR	1	Acetyl (K)	899.51886	0.51886475	2078;2133	P68431;Q71DI3;Q6NXT2;P84243	HIST1H3A;HIST2H3A;H3F3C;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.3	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	1.26					1	2	2	4	3	2	5	2	3	17.515	9.349	2	0.001384	7762	160513_QHF_FH_JSI11Kac_4	104.06	14.383			1.5376	1.2994	53.816	12	0	Median	1.5376	1.2994	1.9607	2	0	Median	2.5129	2.8982	7.8793	5	0	Median	0.96596	0.95091	23.596	2	0	Median	0.92903	1.0002	4.4649	3	0	Median	1138400000	388070000	750300000	46966000	18729000	28236000	746390000	181820000	564570000	265620000	145340000	120280000	79392000	42189000	37204000	41477	2078;2133	39043	253762;253763;253764;253765;253766;253767;253768;253769;253770;253771;253772;253773	340355;340356;340357;340358;340359;340360;340361;340362;340363;340364;340365;340366;340367	340358	2165		13	
QLAVAEGKPPEAPK	2	Unmodified	1433.7878	0.78782897	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	2	8	2							3	1	4	4	31.131	30.468	2;3	0.00015116	25702	160511_QHF_FH_JSI12i_2	78.069	57.212			0.99353	0.97034	18.296	9	3	Median	0.93794	0.80896	16.147	2	1	Median	0.89901	1.0899	NaN	1	0	Median	0.91867	0.91889	4.177	3	1	Median	1.0219	1.1199	15.735	3	1	Median	1027700000	501900000	525820000	191550000	85248000	106300000	141700000	73926000	67774000	354990000	177020000	177980000	339480000	165710000	173770000	41478	1872	39044	253774;253775;253776;253777;253778;253779;253780;253781;253782;253783;253784;253785	340368;340369;340370;340371;340372;340373;340374;340375;340376;340377;340378;340379;340380;340381;340382;340383	340370			16	
QLCDNAGFDATNILNK	1	Unmodified	1792.8414	0.84139745	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.908	69.358	2;3	7.5587E-98	62744	160511_QHF_FH_JSI10i_1	262.07	225.65			0.94286	0.87891	22.575	8	2	Median	1.0394	0.86161	3.3826	2	0	Median	0.71966	0.8566	21.092	2	1	Median	0.82506	0.80988	10.998	2	1	Median	1.2756	1.3115	1.9895	2	0	Median	967150000	446710000	520430000	106320000	42665000	63651000	271900000	127280000	144620000	278720000	146910000	131810000	310210000	129860000	180350000	41479	4321	39045	253786;253787;253788;253789;253790;253791;253792;253793	340384;340385;340386;340387;340388;340389;340390;340391;340392;340393;340394;340395;340396	340392			13	
QLCFQDQYVK	1	Unmodified	1327.6231	0.62307182	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		49.262	48.848	2	0.04956	44193	160511_QHF_FH_JSI11i_1	43.272	32.121			0.60448	0.59483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60448	0.59483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28129000	16532000	11597000	0	0	0	0	0	0	28129000	16532000	11597000	0	0	0	41480	3736	39046	253794	340397	340397			1	
QLDAGEEATTTK	1	Unmodified	1262.599	0.59902514	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	16.639	16.105	2	6.1071E-05	13529	160511_QHF_FH_JSI11i_1	96.946	82.647			0.71473	0.61284	35.446	6	2	Median	0.71473	0.58513	11.47	2	1	Median	0.48616	0.56662	6.164	2	1	Median	0.8015	0.78144	NaN	1	0	Median	1.3245	1.3645	NaN	1	0	Median	538150000	301000000	237150000	180450000	100850000	79607000	196100000	122700000	73400000	90323000	43801000	46523000	71275000	33650000	37625000	41481	294	39047	253795;253796;253797;253798;253799;253800	340398;340399;340400;340401;340402;340403	340398			6	
QLDDKDEEINQQSQLVEK	2	Unmodified	2158.039	0.038970866	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	2	3	40.718	40.125	2;3	8.1422E-32	36215	160511_QHF_FH_JSI11i_1	159.7	128.24			0.93139	1.008	14.717	4	0	Median	0.94154	0.76831	NaN	1	0	Median	0.88732	1.0445	NaN	1	0	Median	1.0862	1.0519	NaN	1	0	Median	0.92135	0.97281	NaN	1	0	Median	1039600000	478360000	561190000	136430000	53506000	82924000	312650000	155090000	157560000	278150000	115150000	163010000	312320000	154620000	157710000	41482	1400	39048	253801;253802;253803;253804;253805;253806;253807;253808	340404;340405;340406;340407;340408;340409;340410;340411;340412;340413;340414;340415;340416;340417	340406			14	
QLDEGEISTIDK	1	Unmodified	1346.6565	0.65654002	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	46.971	44.522	2	2.2764E-31	40549	160511_QHF_FH_JSI12i_1	189.57	165.54			1.0288	1.0504	10.553	5	0	Median	1.0171	0.84942	NaN	1	0	Median	0.85779	1	NaN	1	0	Median	1.1162	1.0776	3.6161	2	0	Median	1.0288	1.0827	NaN	1	0	Median	613470000	270210000	343260000	144880000	58407000	86476000	169530000	84584000	84949000	159490000	73044000	86446000	139560000	54171000	85391000	41483	1035	39049	253809;253810;253811;253812;253813	340418;340419;340420;340421;340422;340423;340424;340425;340426;340427;340428	340422			11	
QLDENISLFLIHLSPYFLLK	1	Unmodified	2402.325	0.32496954	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.564	91.458	3	1.311E-157	54962	160513_QHF_FH_JSI10Kac_6	273.87	252.77			0.82577	0.99259	20.969	3	0	Plateau	0.86049	0.72535	NaN	1	0	Median	0.82443	0.99259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.0798	NaN	1	0	Median	565940000	311480000	254460000	215120000	117370000	97747000	296230000	170310000	125920000	0	0	0	54595000	23798000	30798000	41484	4733	39050	253814;253815;253816	340429;340430;340431;340432;340433	340433			5	
QLDEPKLER	1	Unmodified	1126.5982	0.59823728	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	25.056	24.298	3	0.0013216	21027	160511_QHF_FH_JSI10i_2	52.167	36.577			0.53822	0.55075	10.819	3	0	Plateau	0.79464	0.67898	NaN	1	0	Median	0.52611	0.64122	NaN	1	0	Median	0.53822	0.55075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	430540000	247820000	182710000	111770000	59202000	52568000	126430000	79760000	46665000	192340000	108860000	83482000	0	0	0	41485	1237	39051	253817;253818;253819;253820	340434;340435;340436;340437	340436			4	
QLDFNSSK	1	Unmodified	937.45051	0.45051041	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	24.493	22.27	2	0.00028339	19817	160511_QHF_FH_JSI12i_1	113.5	28.239			0.91347	0.96698	5.3209	5	0	Median	1.1118	0.92939	NaN	1	0	Median	0.83445	0.97082	NaN	1	0	Median	0.95618	0.93569	9.8146	2	0	Median	0.91347	0.96698	NaN	1	0	Median	904690000	505920000	398770000	206510000	99188000	107320000	197110000	117700000	79419000	251540000	157550000	93990000	249520000	131480000	118040000	41486	1805	39052	253821;253822;253823;253824;253825	340438;340439;340440;340441	340439			4	
QLDMILDEQRR	0	Unmodified	1415.7191	0.71909747	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		6	2							1		4	3	47.911	47.013	2;3	4.7464E-10	41077	160511_QHF_FH_JSI11i_3	129.85	91.548			0.79656	0.86109	48.353	6	5	Median	0.76371	0.65883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80313	0.81933	71.185	3	3	Median	0.84929	0.95639	7.8137	2	1	Median	1071000000	419310000	651650000	121950000	57784000	64170000	0	0	0	710620000	251020000	459600000	238390000	110510000	127880000	41487	1648	39053	253826;253827;253828;253829;253830;253831;253832;253833	340442;340443;340444;340445;340446;340447;340448;340449	340442			8	
QLDMQSSWVYETGR	0	Unmodified	1698.7672	0.76716988	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	65.254	63.954	2	0.050166	54974	160511_QHF_FH_JSI12i_2	44.765	31.102			2.0028	2.2754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0028	2.2754	NaN	1	1	Median	9785000	2799500	6985500	0	0	0	0	0	0	0	0	0	9785000	2799500	6985500	41488	3128	39054	253834	340450	340450			1	
QLDQGNK	1	Unmodified	801.39808	0.39808091	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	4.5664	4.2247	2	0.01351	2100	160511_QHF_FH_JSI11i_1	58.687	28.88			0.97369	0.9929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97369	0.9929	NaN	1	0	Median	56315000	37222000	19092000	0	0	0	0	0	0	0	0	0	56315000	37222000	19092000	41489	3494	39055	253835;253836	340451;340452	340451			2	
QLDVLYPK	1	Unmodified	974.54368	0.54368251	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	50.733	49.827	2	0.019277	43964	160511_QHF_FH_JSI10i_2	45.738	12.953			0.95402	0.9777	63.135	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6026	1.5279	NaN	1	1	Median	0.56791	0.62564	NaN	1	0	Median	110030000	59102000	50924000	0	0	0	0	0	0	51471000	22779000	28691000	58555000	36322000	22233000	41490	2404	39056	253837;253838;253839	340453;340454;340455	340455			3	
QLDWRPER	0	Unmodified	1098.557	0.55704117	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			30.782	29.405	3	0.013171	24051	160511_QHF_FH_JSI9i_3	37.191	32.579			0.84484	0.83481	10.357	2	0	Median	1.0893	0.89824	NaN	1	0	Median	0.65526	0.77586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51343000	30758000	20585000	32119000	18631000	13488000	19224000	12127000	7097300	0	0	0	0	0	0	41491	366	39057	253840;253841	340456;340457;340458	340458			3	
QLEAIDQLHLEYAK	1	Unmodified	1669.8675	0.86753585	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								4	1	3	2	67.859	67.042	2;3	2.5382E-10	57676	160511_QHF_FH_JSI12i_2	105.39	79.267			0.61087	0.56721	75.98	6	5	Median	0.28856	0.24616	27.05	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1818	1.2007	48.897	2	2	Median	0.91582	0.98903	NaN	1	0	Median	656540000	419810000	236730000	332710000	235340000	97372000	12746000	12746000	0	286420000	159640000	126780000	24661000	12082000	12579000	41492	361	39058	253842;253843;253844;253845;253846;253847;253848;253849;253850;253851	340459;340460;340461;340462;340463;340464;340465;340466;340467;340468;340469;340470	340461			12	
QLEAIVR	0	Unmodified	827.4865	0.48650199	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.378	29.283	2	0.018518	24744	160511_QHF_FH_JSI11i_2	54.205	7.8345			0.98518	1.131	41.898	3	1	Median	1.4213	1.2394	NaN	1	0	Median	0.45842	0.5755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98518	1.131	NaN	1	0	Median	339820000	170230000	169600000	98350000	37960000	60391000	105590000	64664000	40928000	0	0	0	135880000	67603000	68279000	41493	1410	39059	253852;253853;253854;253855	340471;340472;340473	340472			3	
QLEDGRTLSDYNIQK	1	Unmodified	1778.8799	0.87989145	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.576	4	8	1							2	4	3	4	42.029	41.282	2;3	4.8513E-10	35225	160511_QHF_FH_JSI12i_2	118.21	95.072			0.73142	0.83455	64.991	12	2	Median	2.0534	1.7534	5.6511	2	0	Median	0.74892	0.9175	9.1744	4	1	Median	0.23559	0.23291	22.277	2	1	Median	0.60269	0.64277	26.925	4	0	Median	2195000000	1365400000	829580000	361150000	115530000	245620000	693470000	424270000	269200000	364880000	326830000	38051000	775510000	498800000	276710000	41494	2042	39060	253856;253857;253858;253859;253860;253861;253862;253863;253864;253865;253866;253867;253868	340474;340475;340476;340477;340478;340479;340480;340481;340482;340483;340484;340485;340486;340487;340488;340489;340490;340491;340492;340493	340476			20	
QLEDWLHSK	1	Unmodified	1154.572	0.57202253	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		46.203	45.469	3	0.018758	39929	160511_QHF_FH_JSI10i_2	37.251	29.031			0.4352	0.48404	3.6765	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37914	0.47162	NaN	1	1	Median	0.49955	0.49679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78567000	51150000	27418000	0	0	0	27796000	18242000	9554100	50772000	32908000	17864000	0	0	0	41495	3896	39061	253869;253870	340494;340495	340495			2	
QLEEAEEEAQR	0	Unmodified	1330.6001	0.60008777	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	17.316	17.073	2	5.599E-06	14502	160511_QHF_FH_JSI11i_1	114.89	90.905			0.14812	0.38345	107.35	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.62769	0.70865	175.48	2	2	Median	0.39177	0.37761	NaN	1	1	Median	0.36462	0.38939	NaN	1	1	Median	138270000	82235000	56032000	0	0	0	55181000	36464000	18717000	39955000	20079000	19876000	43131000	25692000	17439000	41496	1436	39062	253871;253872;253873;253874;253875	340496;340497;340498;340499;340500	340497			5	
QLEEELR	0	Unmodified	915.46616	0.46616048	73	CON__Q3SX28			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	3	3	23.789	21.515	2	0.0086729	19016	160511_QHF_FH_JSI12i_1	82.452	7.2398		+	0.8511	0.86747	13.533	10	0	Median	0.91515	0.76374	12.121	2	0	Median	0.68663	0.81541	20.798	2	0	Median	0.80529	0.79043	9.9725	3	0	Plateau	0.88396	0.92749	12.151	3	0	Median	1586000000	896950000	689060000	370190000	192680000	177500000	393440000	259290000	134150000	440520000	237520000	203000000	381860000	207460000	174410000	41497	73	39063	253876;253877;253878;253879;253880;253881;253882;253883;253884;253885	340501;340502;340503;340504;340505;340506;340507;340508;340509;340510;340511;340512;340513	340505			13	
QLEEEQQALQK	1	Unmodified	1342.6729	0.67285879	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.067	25.057	2	5.8094E-49	22221	160511_QHF_FH_JSI12i_1	225.01	162.46		+	0.90903	1.0392	20.967	7	0	Median	0.83239	0.66889	NaN	1	0	Median	0.89413	1.0562	2.3055	2	0	Median	1.129	1.0964	9.3313	2	0	Median	1.0044	1.0915	23.487	2	0	Median	3706100000	1832000000	1874100000	926510000	527450000	399060000	827560000	461120000	366440000	1044600000	353400000	691190000	907430000	490060000	417370000	41498	73;886	39064	253886;253887;253888;253889;253890;253891;253892	340514;340515;340516;340517;340518;340519;340520;340521;340522;340523;340524;340525;340526;340527;340528;340529;340530	340518			17	
QLEELLSDMK	1	Unmodified	1204.6009	0.6009394	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		67.828	67.404	2	0.0044189	61285	160511_QHF_FH_JSI11i_1	65.933	41.01			0.70695	0.69041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70695	0.69041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54391000	32317000	22074000	0	0	0	0	0	0	54391000	32317000	22074000	0	0	0	41499	2578	39065	253893	340531	340531			1	
QLEEPGAGTPSPVR	0	Unmodified	1436.726	0.72595699	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.623	35.32	2	0.00011763	31596	160511_QHF_FH_JSI10i_1	103.91	70.647			1.0223	1.0877	10.766	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0079	1.1737	NaN	1	0	Median	1.0368	1.0079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96556000	53522000	43034000	0	0	0	50867000	29826000	21042000	45688000	23696000	21992000	0	0	0	41500	4188	39066	253894;253895	340532;340533	340533			2	
QLEEQNAR	0	Unmodified	986.47812	0.47812214	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	6.756	6.4339	2	1.4475E-06	4148	160511_QHF_FH_JSI11i_1	150.88	111.92			1.0237	0.97243	17.402	6	5	Median	1.1507	0.94011	NaN	1	0	Median	0.88496	1.0504	21.822	2	2	Median	1.0289	1.0059	NaN	1	1	Median	0.84939	0.86531	25.179	2	2	Median	584460000	286900000	297560000	103960000	48663000	55293000	166600000	89728000	76873000	85847000	46110000	39736000	228060000	102400000	125660000	41501	2516	39067	253896;253897;253898;253899;253900;253901	340534;340535;340536;340537;340538;340539;340540	340534			7	
QLEESVDALSEELVQLR	0	Unmodified	1957.0004	0.0004005156	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			100.28	100.26	2	1.4107E-10	90961	160511_QHF_FH_JSI10i_1	136.33	103.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8036800	8036800	0	0	0	0	8036800	8036800	0	0	0	0	0	0	0	41502	1400	39068	253902	340541	340541			1	
QLEGIWHTSIVVHK	1	Unmodified	1645.894	0.89402537	3055	Q6ICB0	DESI1	Desumoylating isopeptidase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			64.793	56.625	3	0.012959	31203	160513_QHF_FH_JSI10Kac_6	44.691	28.025			2.477	2.8435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.477	2.8435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15410000	4796900	10613000	0	0	0	15410000	4796900	10613000	0	0	0	0	0	0	41503	3055	39069	253903	340542	340542			1	
QLEIAHEK	1	Unmodified	966.51345	0.51344502	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.622	13.399	2	0.0063208	10602	160511_QHF_FH_JSI11i_2	71.692	22.595			0.3687	0.37049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3687	0.37049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132350000	112840000	19504000	0	0	0	0	0	0	132350000	112840000	19504000	0	0	0	41504	1357	39070	253904	340543	340543			1	
QLEIAHEKLR	1	Acetyl (K)	1277.7092	0.70918471	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.266	37.592	3	0.0089574	20467	160513_QHF_FH_JSI11Kac_6	42.789	27.249			0.30202	0.28714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30202	0.28714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18135000	14751000	3383800	0	0	0	0	0	0	18135000	14751000	3383800	0	0	0	41505	1357	39071	253905	340544	340544	1292		1	
QLEKDFSSMK	2	Acetyl (K)	1253.5962	0.59618837	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		57.26	46.449	2	0.0020062	26812	160513_QHF_FH_JSI11Kac_4	83.862	48.567			0.34253	0.36789	150.35	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89948	1.0652	NaN	1	0	Median	0.13044	0.12706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17429000	12534000	4894100	0	0	0	6562700	3458400	3104300	10866000	9076000	1789900	0	0	0	41506	1484	39072	253906;253907	340545;340546	340546	1496		2	
QLEKDFSSMK	2	Acetyl (K);Oxidation (M)	1269.5911	0.59110299	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	1	0	1	1		By matching	By MS/MS		13	0						2					1	1		42.668	33.561	2	0.0027243	19082	160513_QHF_FH_JSI11Kac_3	67.207	59.275			0.84128	0.89151	121.48	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7889	2.1047	NaN	1	0	Median	0.39563	0.37762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6361600	3620900	2740700	0	0	0	1862600	576850	1285800	4499000	3044100	1454900	0	0	0	41507	1484	39072	253908;253909	340547	340547	1496	1165	1	
QLEKNQLEK	2	Unmodified	1128.6139	0.61388734	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	14.5	0.5							2	2		1	1		2	19.151	10.119	3	0.015511	7426	160513_QHF_FH_JSI9Kac_5	35.541	14.169			0.9835	0.99592	42.796	4	2	Median	1.2081	1.0173	NaN	1	0	Median	0.80068	0.97499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93415	1.011	74.049	2	2	Median	22392000	10836000	11556000	3613300	1556100	2057100	8167500	4476100	3691400	0	0	0	10611000	4803400	5807700	41508	4535	39073	253910;253911;253912;253913	340548;340549;340550;340551;340552	340548			5	
QLELENLTTQETR	0	Unmodified	1573.7948	0.79476484	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.6	0.49	2	3								2	2		1	57.648	56.553	2	3.5006E-31	50968	160511_QHF_FH_JSI10i_1	168.98	104.33			1.7667	1.1811	22.501	4	3	Linear	1.3839	1.1764	19.693	2	1	Median	1.3025	1.627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91497	1.0316	NaN	1	1	Median	192880000	87707000	105170000	121900000	49813000	72082000	41407000	22974000	18433000	0	0	0	29573000	14919000	14653000	41509	1133	39074	253914;253915;253916;253917;253918	340553;340554;340555;340556;340557	340554			5	
QLELRQEEER	0	Unmodified	1328.6684	0.66844211	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	4	2	18.719	18.293	2;3	2.5577E-06	15693	160511_QHF_FH_JSI10i_2	127.42	78.984			0.98837	1.0893	12.355	11	5	Median	1.316	1.1356	0.32748	2	1	Median	0.87407	1.086	9.1838	3	3	Median	1.1718	1.1493	14.86	4	1	Median	0.9109	0.91981	2.8819	2	0	Median	1939500000	930720000	1008700000	250070000	103800000	146270000	715080000	390590000	324490000	693340000	286770000	406570000	280970000	149550000	131420000	41510	2644	39075	253919;253920;253921;253922;253923;253924;253925;253926;253927;253928;253929	340558;340559;340560;340561;340562;340563;340564;340565;340566;340567;340568;340569;340570;340571;340572;340573	340567			16	
QLENLEQQK	1	Unmodified	1128.5775	0.57750184	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	20.578	19.987	2	0.0029828	17522	160511_QHF_FH_JSI12i_1	72.23	41.001			0.12659	0.10462	20.386	3	3	Plateau	0.11539	0.094233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.10588	0.10462	NaN	1	1	Median	0.13289	0.13968	NaN	1	1	Median	355020000	312290000	42728000	103450000	87671000	15783000	0	0	0	113010000	103850000	9165200	138550000	120770000	17780000	41511	5321	39076	253930;253931;253932	340574;340575;340576	340575			3	
QLENSLNEFGEK	1	Unmodified	1406.6678	0.66777341	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			2	4	2	2	47.518	45.603	2	1.3019E-41	41486	160511_QHF_FH_JSI12i_1	202.16	152.12			1.0924	1.0803	29.864	9	3	Median	1.5329	1.2812	54.437	2	1	Median	0.92734	1.0803	35.618	3	1	Median	1.3456	1.3169	30.544	2	1	Median	0.98817	1.0712	12.248	2	0	Median	4939600000	2412400000	2527200000	1067800000	501300000	566540000	1174200000	628650000	545560000	1270100000	617320000	652740000	1427500000	665130000	762370000	41512	1282	39077	253933;253934;253935;253936;253937;253938;253939;253940;253941;253942	340577;340578;340579;340580;340581;340582;340583;340584;340585;340586;340587;340588;340589;340590;340591;340592;340593;340594;340595	340583			19	
QLEPVYNSLAK	1	Unmodified	1260.6714	0.67140222	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.8	3	1	1							3	1	1		49.127	48.184	2	1.3034E-06	42904	160511_QHF_FH_JSI9i_1	119.16	56.955			0.54938	0.62071	53.925	5	5	Median	0.35923	0.29191	56.036	3	3	Median	0.54938	0.66414	NaN	1	1	Median	0.66343	0.64241	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2291900000	1532400000	759480000	997070000	707650000	289430000	645550000	420110000	225440000	649310000	404690000	244610000	0	0	0	41513	1034	39078	253943;253944;253945;253946;253947	340596;340597;340598;340599;340600	340599			5	
QLEQENASLESR	0	Unmodified	1402.6688	0.66883604	77	CON__Q497I4;Q92764	KRT35	Keratin, type I cuticular Ha5	yes	no	0	0	0	0			By MS/MS		2	0		1										1		19.611	19.303	3	0.030035	15765	160511_QHF_FH_JSI11i_2	20.463	2.3896		+	0.75179	0.75974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75179	0.75974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79834000	50808000	29027000	0	0	0	0	0	0	79834000	50808000	29027000	0	0	0	41514	77	39079	253948	340601	340601			1	
QLEQHGLTPQQIQIPQVTTLDIITR	0	Unmodified	2869.5662	0.56615588	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		99.627	99.482	3	0.0051619	87268	160511_QHF_FH_JSI11i_2	34.125	31.026			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41515	3355	39080	253949	340602	340602			1	
QLERGDVNVVDLK	1	Unmodified	1483.7995	0.79945628	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.485	37.322	3	0.022159	31661	160511_QHF_FH_JSI12i_3	30.059	16.645			0.901	0.92769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.901	0.92769	NaN	1	0	Median	500420000	213280000	287140000	0	0	0	0	0	0	0	0	0	500420000	213280000	287140000	41516	1832	39081	253950	340603	340603			1	
QLESFYIQTLLDIVSSYGK	1	Unmodified	2203.1413	0.14125109	860	P06865	HEXA	Beta-hexosaminidase subunit alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.94	95.216	3	2.2674E-05	56170	160513_QHF_FH_JSI10Kac_6	128.38	111.89			0.81746	0.97427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81746	0.97427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76238000	41742000	34496000	0	0	0	76238000	41742000	34496000	0	0	0	0	0	0	41517	860	39082	253951	340604	340604			1	
QLESLIR	0	Unmodified	857.49707	0.49706667	1409	P33991;Q9UJA3	MCM4;MCM8	DNA replication licensing factor MCM4;DNA helicase MCM8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	39.592	38.634	2	0.00011904	33016	160511_QHF_FH_JSI12i_2	139.68	15.306			0.8162	0.83322	23.828	4	1	Median	0.89745	0.76208	NaN	1	0	Median	0.74231	0.91101	NaN	1	0	Median	0.57575	0.5861	NaN	1	1	Median	0.9375	1.0099	NaN	1	0	Median	870420000	457020000	413400000	139230000	67900000	71325000	204870000	106670000	98206000	291430000	171950000	119480000	234890000	110500000	124390000	41518	1409	39083	253952;253953;253954;253955;253956	340605;340606;340607;340608;340609;340610	340606			6	
QLESMIR	0	Unmodified	875.45349	0.4534873	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		29.735	29.361	2	0.040857	24853	160511_QHF_FH_JSI11i_2	49.358	1.5099			0.68957	0.69307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68957	0.69307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	217190000	115540000	101650000	0	0	0	0	0	0	217190000	115540000	101650000	0	0	0	41519	2545	39084	253957	340611	340611			1	
QLESTQTESNK	1	Unmodified	1263.5943	0.59427411	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	8.7268	4.8963	2	1.8606E-71	5373	160511_QHF_FH_JSI11i_1	221.52	142.4			1.0515	0.9886	32.521	4	1	Median	1.1426	0.92309	NaN	1	0	Median	1.5093	1.7971	NaN	1	1	Median	0.87585	0.88942	NaN	1	0	Median	0.96767	1.0588	NaN	1	0	Median	468980000	238140000	230840000	232930000	124770000	108160000	226820000	108600000	118220000	6166600	3240800	2925700	3063400	1526300	1537100	41520	1400	39085	253958;253959;253960;253961;253962;253963	340612;340613;340614;340615;340616;340617;340618;340619	340612			8	
QLETLGQEK	1	Unmodified	1044.5451	0.54513908	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.68	5	4	2		1	3	3			4	6	4	4	25.101	21.521	2	2.9445E-11	18423	160511_QHF_FH_JSI9i_1	158.76	84.34		+	1.0077	1.0558	27.201	17	4	Median	0.9966	0.83083	36.985	4	2	Median	0.88511	0.9882	25.357	5	1	Median	1.0542	1.0352	31.757	4	1	Median	1.0599	1.152	5.785	4	0	Median	12332000000	5466600000	6865200000	3147700000	1392600000	1755100000	2912700000	1410200000	1502500000	3323600000	1346700000	1976900000	2947800000	1317100000	1630700000	41521	51	39086	253964;253965;253966;253967;253968;253969;253970;253971;253972;253973;253974;253975;253976;253977;253978;253979;253980;253981	340620;340621;340622;340623;340624;340625;340626;340627;340628;340629;340630;340631;340632;340633;340634;340635;340636;340637;340638;340639;340640;340641;340642;340643;340644;340645;340646;340647;340648;340649;340650	340639			31	
QLETLGQEKLK	2	Acetyl (K)	1327.7347	0.73473076	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS		By MS/MS	13.7	0.471						1	2				2		1	58.075	47.832	2	0.001735	26116	160513_QHF_FH_JSI10Kac_4	79.974	37.579		+	0.99347	1.1533	16.898	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99347	1.1533	16.898	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10013000	5533000	4479500	0	0	0	7790900	3311300	4479500	0	0	0	2221700	2221700	0	41522	51	39087	253982;253983;253984	340651;340652;340653;340654	340651	28		4	
QLEVEPEEPEAENK	1	Unmodified	1639.7577	0.75771063	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	5.68	4				3	2				1	2	3	3	42.418	37.082	2	8.8194E-30	33040	160511_QHF_FH_JSI10i_1	187.85	161.18			1.0185	1.0728	27.568	9	1	Median	0.90913	0.73621	NaN	1	0	Median	0.74333	0.86281	27.282	2	0	Median	1.0902	1.0774	21.884	3	1	Plateau	1.0185	1.095	29.904	3	0	Median	1682000000	820800000	861230000	398240000	180450000	217790000	436350000	233600000	202750000	451810000	204500000	247300000	395630000	202250000	193380000	41523	1459	39088	253985;253986;253987;253988;253989;253990;253991;253992;253993	340655;340656;340657;340658;340659;340660;340661;340662;340663;340664;340665;340666;340667;340668;340669	340663			15	
QLEVVHTLDGK	1	Unmodified	1237.6667	0.6666512	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.721	39.263	2	0.014443	33662	160511_QHF_FH_JSI11i_2	52.247	31.943			1.4004	1.4433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4004	1.4433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22988000	9370800	13617000	0	0	0	0	0	0	22988000	9370800	13617000	0	0	0	41524	615	39089	253994	340670	340670			1	
QLEVYTSGGDPESVAGEYGR	0	Unmodified	2112.96	0.95999226	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									1	2	2		59.899	59.311	2;3	4.6621E-33	53789	160511_QHF_FH_JSI11i_1	192.24	189.11			0.98837	1.0003	3.5949	4	1	Median	1.2735	1.0335	NaN	1	0	Median	0.8736	1.022	NaN	1	0	Median	0.98837	0.96819	1.581	2	1	Median	NaN	NaN	NaN	0	0	Median	868710000	372460000	496250000	227350000	90163000	137180000	348980000	159140000	189840000	292380000	123160000	169220000	0	0	0	41525	5494	39090	253995;253996;253997;253998;253999	340671;340672;340673;340674;340675;340676	340671			5	
QLFCWLDK	1	Unmodified	1108.5376	0.53755128	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.555	73.406	2	0.0024281	67301	160511_QHF_FH_JSI11i_3	80.165	0			1.3341	1.2898	13.784	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2652	1.17	NaN	1	0	Median	1.4068	1.4218	NaN	1	1	Median	129830000	69254000	60573000	0	0	0	0	0	0	44218000	21966000	22252000	85609000	47289000	38321000	41526	2145	39091	254000;254001	340677;340678	340677			2	
QLFDQVVKTIGLR	1	Acetyl (K)	1557.8879	0.88787736	1270;1073	P15311;P26038	EZR;MSN	Ezrin;Moesin	no	no	1	0	0	1			By MS/MS		16	0									1			1		88.163	78.833	2	6.0727E-26	43970	160513_QHF_FH_JSI11Kac_6	174.73	101.66			0.3386	0.33146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3386	0.33146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88304000	64612000	23692000	0	0	0	0	0	0	88304000	64612000	23692000	0	0	0	41527	1073;1270	39092	254002	340679	340679	916		1	
QLFEEQAK	1	Unmodified	991.49746	0.4974606	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								3	1	2	2	24.318	23.633	2	0.000735	20688	160511_QHF_FH_JSI10i_1	100.39	32.078			1.2559	1.2656	33.091	7	3	Median	1.6282	1.3603	34.355	2	1	Median	1.0899	1.2656	NaN	1	0	Median	1.8396	1.8222	9.6983	2	1	Median	0.88533	0.96953	35.769	2	1	Median	904000000	396350000	507650000	230740000	75631000	155110000	208880000	108920000	99961000	240630000	108720000	131910000	223750000	103080000	120660000	41528	2614	39093	254003;254004;254005;254006;254007;254008;254009;254010	340680;340681;340682;340683;340684;340685;340686;340687;340688;340689	340685			10	
QLFEEQAKAK	2	Acetyl (K)	1232.6401	0.6401021	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.906	33.689	2	0.0038784	20237	160513_QHF_FH_JSI11Kac_4	77.677	47.868			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1529800	1529800	0	0	0	0	0	0	0	1529800	1529800	0	0	0	0	41529	2614	39094	254011	340690	340690	2581		1	
QLFHGTPVTIENFLNWK	1	Unmodified	2043.0578	0.057796236	4709	Q9H446	RWDD1	RWD domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.18	101.1	3	1.106E-52	87766	160511_QHF_FH_JSI12i_3	216.71	190.56			0.84828	0.8832	14.644	4	1	Median	0.82159	0.66623	NaN	1	1	Median	0.75788	0.86562	NaN	1	0	Median	0.96262	0.90516	NaN	1	0	Median	0.87585	0.90114	NaN	1	0	Median	785630000	405590000	380040000	86372000	48711000	37661000	151540000	78207000	73331000	227140000	107470000	119670000	320580000	171200000	149380000	41530	4709	39095	254012;254013;254014;254015	340691;340692;340693;340694;340695;340696	340696			6	
QLFHPEQLITGK	1	Unmodified	1409.7667	0.76669959	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.4	3	9	11					5	8	8	9	8	11	65.288	61.457	2;3	1.9639E-42	54347	160511_QHF_FH_JSI11i_3	186.58	0			1.0032	0.97931	33.504	34	4	Median	1.1851	0.9677	9.3004	7	0	Median	0.91129	0.97972	48.528	9	1	Median	0.99512	0.96343	8.6881	8	0	Median	0.9197	0.99451	43.029	10	3	Median	77201000000	33684000000	43518000000	7030700000	3199700000	3831000000	14191000000	7157900000	7033200000	24431000000	9771700000	14660000000	31548000000	13555000000	17994000000	41531	2073;2074;4359	39096	254016;254017;254018;254019;254020;254021;254022;254023;254024;254025;254026;254027;254028;254029;254030;254031;254032;254033;254034;254035;254036;254037;254038;254039;254040;254041;254042;254043;254044;254045;254046;254047;254048;254049;254050;254051	340697;340698;340699;340700;340701;340702;340703;340704;340705;340706;340707;340708;340709;340710;340711;340712;340713;340714;340715;340716;340717;340718;340719;340720;340721;340722;340723;340724;340725;340726;340727;340728;340729;340730;340731;340732;340733;340734;340735;340736;340737;340738;340739;340740;340741;340742;340743;340744;340745;340746;340747;340748;340749;340750;340751;340752;340753;340754;340755;340756;340757;340758;340759;340760;340761;340762;340763;340764;340765;340766;340767;340768;340769;340770;340771;340772;340773;340774;340775;340776;340777;340778;340779;340780;340781;340782;340783;340784;340785;340786;340787;340788;340789;340790;340791;340792;340793;340794;340795;340796;340797;340798;340799;340800;340801;340802;340803;340804;340805;340806;340807;340808;340809;340810;340811;340812;340813;340814;340815;340816;340817;340818;340819;340820	340699			124	
QLFHPEQLITGKEDAANNYAR	1	Unmodified	2414.1979	0.19787154	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	1	3		62.429	61.674	3;4	2.2681E-14	54525	160511_QHF_FH_JSI11i_3	125.88	108.52			0.67665	0.69476	26.823	6	2	Median	0.57904	0.46858	12.911	2	0	Median	0.69539	0.78993	NaN	1	0	Median	0.83336	0.78299	15.377	3	2	Median	NaN	NaN	NaN	0	0	Median	642320000	388800000	253520000	160170000	101890000	58285000	164760000	111850000	52907000	317380000	175050000	142330000	0	0	0	41532	2073;2074;4359	39097	254052;254053;254054;254055;254056;254057	340821;340822;340823;340824;340825;340826;340827;340828;340829;340830;340831;340832;340833	340824			12	
QLFHPEQLITGKEDAANNYAR	1	Acetyl (K)	2456.2084	0.20843623	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	0	1			By MS/MS		16	0									1			1		79.148	69.833	3	9.7274E-10	38282	160513_QHF_FH_JSI11Kac_6	150.69	136.68			0.21915	0.2118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21915	0.2118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84589000	79090000	5499600	0	0	0	0	0	0	84589000	79090000	5499600	0	0	0	41533	2073;2074;4359	39097	254058	340834	340834	2160		1	
QLFLDVLDGTK	1	Unmodified	1247.6762	0.67615325	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	88.392	87.637	2	0.0019759	77063	160511_QHF_FH_JSI11i_2	74.162	46.42			0.6407	0.66991	4.2866	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64168	0.64991	NaN	1	1	Median	0.63972	0.69052	NaN	1	1	Median	37629000	24351000	13278000	0	0	0	0	0	0	19985000	12109000	7876200	17644000	12242000	5401900	41534	2925	39098	254059;254060;254061	340835;340836;340837	340837			3	
QLFLETADLYATK	1	Unmodified	1511.7872	0.78716026	41	P0CG08;B7ZAQ6	GPR89B;GPR89A	Golgi pH regulator B;Golgi pH regulator A	yes	no	0	0	0	0			By MS/MS		2	0		1										1		80.049	79.423	2	0.00021531	69808	160511_QHF_FH_JSI11i_2	103.88	85.569			1.2208	1.222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2208	1.222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25404000	10022000	15382000	0	0	0	0	0	0	25404000	10022000	15382000	0	0	0	41535	41	39099	254062	340838	340838			1	
QLFLGGVDR	0	Unmodified	1003.5451	0.5450795	1013	P12235	SLC25A4	ADP/ATP translocase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	51.475	50.345	2	9.0998E-06	43157	160511_QHF_FH_JSI12i_2	111.95	81.762			0.78705	0.88344	12.928	3	2	Plateau	1.3353	1.1436	NaN	1	1	Median	0.81312	0.99271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78705	0.88344	NaN	1	0	Median	490790000	272910000	217880000	137200000	68980000	68223000	192610000	114840000	77775000	0	0	0	160970000	89091000	71879000	41536	1013	39100	254063;254064;254065;254066;254067	340839;340840;340841;340842;340843;340844	340840			6	
QLFLPSMR	0	Unmodified	990.53207	0.53207197	1603	P47224	RABIF	Guanine nucleotide exchange factor MSS4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	64.266	63.348	2	0.031143	54503	160511_QHF_FH_JSI12i_2	41.429	15.693			0.53584	0.55902	42.303	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72799	0.75395	NaN	1	0	Median	0.39441	0.4145	NaN	1	0	Median	36458000	22823000	13635000	0	0	0	0	0	0	22842000	13102000	9739600	13616000	9720400	3895500	41537	1603	39101	254068;254069	340845	340845			1	
QLFLQTYAR	0	Unmodified	1138.6135	0.61349341	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.08	6.45		2	4				1	1	4	3	3	4	2	59.992	54.702	2	3.2674E-11	30160	160513_QHF_FH_JSI10Kac_6	156.01	132.05			1.0827	1.0758	19.462	12	4	Median	1.2012	1.2186	11.758	3	2	Plateau	1.0025	1.1903	15.136	3	0	Median	0.94354	1.0394	21.694	4	2	Linear	1.0604	1.1075	12.887	2	0	Median	1399900000	662120000	737740000	252210000	112050000	140160000	139330000	70716000	68609000	676090000	338110000	337980000	332230000	141240000	190990000	41538	1805	39102	254070;254071;254072;254073;254074;254075;254076;254077;254078;254079;254080;254081	340846;340847;340848;340849;340850;340851;340852;340853;340854;340855;340856;340857;340858;340859;340860;340861	340861			16	
QLFLVPTATTWPGVAHVLLIWSPGK	1	Unmodified	2730.5261	0.52612896	3390	Q86YV9	HPS6	Hermansky-Pudlak syndrome 6 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.118	90.03	3	5.3485E-34	50898	160513_QHF_FH_JSI11Kac_6	153.82	131.71			0.98352	0.93522	11.41	3	0	Median	1.2874	1.0905	NaN	1	0	Median	0.72553	0.87259	NaN	1	0	Median	0.98352	0.93522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	524710000	266700000	258010000	143080000	72174000	70904000	146350000	75496000	70850000	235290000	119030000	116260000	0	0	0	41539	3390	39103	254082;254083;254084	340862;340863;340864;340865;340866	340863			5	
QLFQLPAK	1	Unmodified	943.5491	0.54910224	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	57.294	56.21	2	0.0053926	49456	160511_QHF_FH_JSI9i_2	65.777	65.777			1.2609	1.2906	19.548	3	0	Median	1.5511	1.2906	NaN	1	0	Median	0.79425	0.96575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2609	1.4011	NaN	1	0	Median	99512000	48271000	51242000	26443000	9485500	16957000	36391000	21357000	15034000	0	0	0	36679000	17428000	19251000	41540	2601	39104	254085;254086;254087	340867;340868	340867			2	
QLFQLPAKK	2	Unmodified	1071.6441	0.64406526	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.109	43.262	3	0.00025068	37840	160511_QHF_FH_JSI11i_3	70.816	60.712			1.1084	1.0444	8.7438	4	0	Median	1.1612	0.93999	NaN	1	0	Median	0.94142	1.0864	NaN	1	0	Median	1.1064	1.0041	NaN	1	0	Median	1.1104	1.1469	NaN	1	0	Median	198940000	101460000	97478000	55032000	22285000	32747000	36971000	21788000	15183000	47379000	24538000	22841000	59555000	32848000	26706000	41541	2601	39105	254088;254089;254090;254091	340869;340870;340871;340872;340873	340869			5	
QLFSFPIK	1	Unmodified	978.55385	0.55385327	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	77.507	76.639	2	0.017783	67112	160511_QHF_FH_JSI11i_2	53.166	16.146			1.1697	1.2593	11.28	3	1	Plateau	1.4296	1.2593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1457	1.2109	NaN	1	0	Median	1.3505	1.4969	NaN	1	0	Median	75320000	32758000	42562000	16746000	6301500	10444000	0	0	0	37994000	16825000	21169000	20580000	9631700	10949000	41542	21	39106	254092;254093;254094	340874;340875;340876	340876			3	
QLFSSLFSGILK	1	Unmodified	1338.7547	0.75473792	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	2	2	3	100.85	99.716	2	4.261E-53	82422	160511_QHF_FH_JSI9i_3	215.87	163.16			0.82042	0.92153	24.048	9	0	Median	1.0204	0.88975	40.705	2	0	Median	0.7917	0.93011	1.3098	2	0	Median	0.91962	0.895	26.38	2	0	Median	0.83934	0.87792	33.323	3	0	Median	13192000000	6425300000	6766500000	5622800000	2381700000	3241100000	2871700000	1598000000	1273700000	1885500000	912510000	972940000	2811800000	1533100000	1278800000	41543	2094	39107	254095;254096;254097;254098;254099;254100;254101;254102;254103	340877;340878;340879;340880;340881;340882;340883;340884	340879			8	
QLFVLAGSAEEGVMTPELAGVIK	1	Unmodified	2358.2505	0.25048397	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	101.57	101.45	3	1.0783E-19	90007	160511_QHF_FH_JSI10i_2	138.35	125.86			1.1171	1.2821	16.121	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.8033	0.96752	NaN	1	1	Median	1.2405	1.2761	NaN	1	1	Median	1.1171	1.2821	NaN	1	0	Median	966370000	420690000	545680000	0	0	0	236150000	97465000	138690000	424720000	175140000	249580000	305490000	148080000	157410000	41544	915	39108	254104;254105;254106	340885;340886;340887	340887			3	
QLFYLPAK	1	Unmodified	978.55385	0.55385327	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.76	62.857	2	0.014067	54006	160511_QHF_FH_JSI12i_2	60.648	20.55			1.1164	1.1866	17.435	4	2	Median	1.5005	1.3296	NaN	1	1	Median	0.73982	0.91216	NaN	1	0	Median	1.2895	1.2925	NaN	1	1	Median	0.96647	1.0893	NaN	1	0	Median	102310000	46636000	55674000	16029000	6457100	9571700	22432000	12484000	9947900	33851000	15502000	18349000	29997000	12193000	17805000	41545	5256	39109	254107;254108;254109;254110	340888;340889;340890	340888			3	
QLFYLPAKK	2	Unmodified	1106.6488	0.64881629	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			50.541	48.958	3	0.016274	40076	160511_QHF_FH_JSI9i_3	39.222	35.798			0.16906	0.16276	36.185	2	2	Median	0.15324	0.12601	NaN	1	1	Median	0.1865	0.21021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	399940000	376760000	23181000	292970000	279750000	13214000	106970000	97000000	9966900	0	0	0	0	0	0	41546	5256	39110	254111;254112	340891;340892	340892			2	
QLGAHSPSTLLTTLMFFNTK	1	Unmodified	2206.1456	0.14562496	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.101	84.75	3	8.6571E-27	47455	160513_QHF_FH_JSI11Kac_6	160.21	144.86			1.0435	0.9447	16.796	4	0	Median	1.0317	0.89743	NaN	1	0	Median	0.66199	0.7797	NaN	1	0	Median	1.0555	0.99446	NaN	1	0	Median	1.1051	1.1612	NaN	1	0	Median	1021300000	509900000	511350000	256700000	130860000	125850000	228100000	121410000	106690000	338010000	159460000	178550000	198440000	98176000	100260000	41547	2800	39111	254113;254114;254115;254116	340893;340894;340895;340896;340897;340898;340899	340893			7	
QLGAYSPIVLLNTLLFFNTK	1	Unmodified	2251.2616	0.261641	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		102.16	94.648	2;3	1.381E-42	56938	160513_QHF_FH_JSI10Kac_6	223.07	183.85			0.84063	0.88868	22.645	3	1	Plateau	0.77986	0.66223	NaN	1	0	Median	0.81952	0.95847	10.691	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	253600000	135260000	118340000	95258000	52728000	42530000	153480000	77675000	75809000	4861100	4861100	0	0	0	0	41548	3004	39112	254117;254118;254119;254120;254121	340900;340901;340902;340903;340904;340905;340906	340906			7	
QLGDNEAITQEIVGCAHLENYALK	1	Unmodified	2685.3068	0.30682965	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	89.95	89.223	3	4.1496E-06	78521	160511_QHF_FH_JSI11i_2	57.802	50.269			0.90262	0.93625	16.043	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82124	0.83584	NaN	1	0	Median	0.99205	1.0487	NaN	1	0	Median	44836000	25348000	19488000	0	0	0	0	0	0	27629000	16538000	11091000	17207000	8810300	8396400	41549	4888	39113	254122;254123	340907	340907			1	
QLGEANEEFALR	0	Unmodified	1375.6732	0.67319314	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	52.214	51.261	2	9.7196E-11	43722	160511_QHF_FH_JSI12i_2	145.46	122.72			1.3153	1.226	16.703	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.3153	1.6233	NaN	1	1	Median	1.4993	1.5146	NaN	1	1	Median	1.0538	1.1815	NaN	1	0	Median	243040000	112570000	130470000	0	0	0	59224000	31001000	28223000	114160000	48060000	66101000	69655000	33505000	36150000	41550	5709	39114	254124;254125;254126	340908;340909;340910;340911	340909			4	
QLGEVASFGGSNIEPSVR	0	Unmodified	1845.9221	0.92209062	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	65.738	64.649	2	2.3315E-16	56514	160511_QHF_FH_JSI11i_2	151.54	112.39			0.78043	0.85088	10.958	4	2	Median	1.0427	0.91434	NaN	1	0	Median	0.65353	0.79182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78043	0.86367	15.953	2	2	Median	69353000	40519000	28834000	17818000	9160500	8657400	20807000	13042000	7764800	0	0	0	30728000	18316000	12412000	41551	1003	39115	254127;254128;254129;254130;254131	340912;340913;340914;340915;340916;340917;340918	340917			7	
QLGFQETAYGEFLSR	0	Unmodified	1744.842	0.84204938	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									2	2	2	81.255	80.368	2	1.332E-11	71584	160511_QHF_FH_JSI10i_2	108.56	74.688			0.86066	0.90771	14.527	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88278	0.90771	8.0768	2	2	Median	0.79187	0.8548	23.061	2	2	Median	73669000	39840000	33828000	0	0	0	0	0	0	41392000	21466000	19926000	32276000	18374000	13902000	41552	2591	39116	254132;254133;254134;254135;254136;254137	340919;340920;340921;340922;340923;340924	340924			6	
QLGGSVELVDIGK	1	Unmodified	1313.7191	0.7190807	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		66.049	65.602	2	4.5936E-17	59423	160511_QHF_FH_JSI10i_1	140.09	106.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41553	4160	39117	254138;254139	340925;340926	340925			2	
QLGISATMLNASSSK	1	Unmodified	1506.7712	0.77119262	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.33	4	4	4					4	2	5	4	5	4	62.858	59.633	2	8.0459E-117	53014	160511_QHF_FH_JSI11i_3	275.35	262.74			0.95457	0.97483	9.9999	16	3	Median	1.1179	0.95976	12.907	3	0	Median	0.87254	1.0323	11.906	4	0	Median	0.95013	0.95032	11.142	5	2	Median	0.93804	0.90015	8.8095	4	1	Linear	1674200000	869470000	804780000	167060000	81843000	85221000	300120000	162450000	137680000	621320000	309470000	311850000	585740000	315710000	270030000	41554	1579	39118	254140;254141;254142;254143;254144;254145;254146;254147;254148;254149;254150;254151;254152;254153;254154;254155;254156;254157	340927;340928;340929;340930;340931;340932;340933;340934;340935;340936;340937;340938;340939;340940;340941;340942;340943;340944;340945;340946;340947;340948;340949;340950;340951;340952	340929			26	
QLGISATMLNASSSK	1	Oxidation (M)	1522.7661	0.76610725	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	9	6			1					1		1			1	55.55	44.963	2	2.929E-07	38832	160511_QHF_FH_JSI12i_3	95.401	63.558			1.1087	0.91153	NaN	1	1	Median	1.1087	0.91153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1916500	724430	1192100	1916500	724430	1192100	0	0	0	0	0	0	0	0	0	41555	1579	39118	254158;254159	340953;340954	340954		1240	2	
QLGLPTALK	1	Unmodified	939.57532	0.57531699	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.6	3	6	1							3	2	2	3	56.278	55.426	2	0.00076831	47941	160511_QHF_FH_JSI11i_2	74.486	46.961			0.97732	0.92179	7.9758	8	3	Median	1.0667	0.90726	1.2206	2	1	Median	0.73004	0.88549	6.7058	2	1	Median	0.97732	0.95998	0.59886	2	0	Median	0.88591	0.95169	17.583	2	1	Median	582520000	298870000	283660000	93731000	44866000	48866000	156320000	85603000	70721000	180560000	92279000	88278000	151910000	76120000	75791000	41556	5365	39119	254160;254161;254162;254163;254164;254165;254166;254167;254168;254169	340955;340956;340957;340958;340959;340960;340961;340962;340963;340964	340963			10	
QLGLVPR	0	Unmodified	781.48102	0.48102268	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	34.744	33.87	2	0.015518	28793	160511_QHF_FH_JSI11i_2	64.523	27.967			0.85443	0.91634	28.121	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74344	0.7511	NaN	1	0	Median	0.98198	1.1179	NaN	1	0	Median	160540000	87436000	73104000	0	0	0	0	0	0	112060000	60964000	51100000	48475000	26472000	22003000	41557	1790	39120	254170;254171	340965;340966	340966			2	
QLGLVVCR	0	Unmodified	943.52732	0.52732094	5359	Q9UK45	LSM7	U6 snRNA-associated Sm-like protein LSm7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.255	41.15	2	0.00073038	35185	160511_QHF_FH_JSI12i_3	94.006	46.091			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41558	5359	39121	254172;254173	340967;340968	340968			2	
QLGPQVQQIILVSPMGVSR	0	Unmodified	2049.1405	0.14048001	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	94.982	94.593	2;3	2.1817E-18	83707	160511_QHF_FH_JSI10i_2	166.38	152.98			0.84085	0.94987	21.727	5	1	Median	1.367	1.178	NaN	1	1	Median	0.89573	1.1484	NaN	1	0	Median	0.83166	0.83116	NaN	1	0	Median	0.74189	0.81839	21.068	2	0	Median	91505000	48450000	43056000	11189000	2569400	8619200	13140000	7663700	5476700	25530000	15299000	10231000	41646000	22918000	18729000	41559	446	39122	254174;254175;254176;254177;254178;254179	340969;340970;340971;340972;340973;340974;340975	340973			7	
QLGQDLLNSYIENEGK	1	Unmodified	1819.8952	0.89520716	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.957	77.755	3	0.034104	67240	160511_QHF_FH_JSI12i_2	31.883	23.06			3.9445	4.4113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9445	4.4113	NaN	1	1	Median	9018600	1088900	7929700	0	0	0	0	0	0	0	0	0	9018600	1088900	7929700	41560	723	39123	254180	340976	340976			1	
QLGQDPFFDMHMMVSKPEQWVK	2	Unmodified	2677.2491	0.24912053	2797	Q96AT9;Q2QD12	RPE;RPEL1	Ribulose-phosphate 3-epimerase;Ribulose-phosphate 3-epimerase-like protein 1	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	95.243	95.248	4	1.9134E-06	84856	160511_QHF_FH_JSI11i_3	69.922	63.206			1.9529	2.018	33.276	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.642	1.5318	NaN	1	0	Median	1.4008	1.449	46.841	2	1	Median	92292000	39269000	53023000	0	0	0	0	0	0	19896000	9670600	10225000	72396000	29598000	42798000	41561	2797	39124	254181;254182;254183	340977;340978;340979;340980	340977			4	
QLGSILK	1	Unmodified	757.46979	0.46978929	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	36.249	35.815	2	0.02122	30496	160511_QHF_FH_JSI12i_2	51.787	15.602			1.0427	1.0567	81.473	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0427	1.0567	81.473	2	2	Median	NaN	NaN	NaN	0	0	Median	525400000	233120000	292290000	0	0	0	0	0	0	525400000	233120000	292290000	0	0	0	41562	231	39125	254184;254185;254186	340981;340982;340983	340981			3	
QLGSILKTNVR	1	Acetyl (K)	1269.7405	0.74048484	231	O14980	XPO1	Exportin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4		2	2	3	64.694	54.657	2	0.001155	29659	160513_QHF_FH_JSI11Kac_6	84.06	46.33			0.837	0.89956	52.442	6	1	Median	NaN	NaN	NaN	0	0	Median	0.75076	0.89266	7.9937	2	0	Median	0.67843	0.65692	37.549	2	0	Median	1.6615	1.785	42.277	2	1	Median	50264000	29915000	20349000	0	0	0	24228000	14710000	9517800	17964000	12021000	5943800	8072100	3184700	4887400	41563	231	39126	254187;254188;254189;254190;254191;254192;254193	340984;340985;340986;340987;340988;340989;340990;340991;340992	340985	130		9	
QLGSVATGSTLQQSLELK	1	Unmodified	1859	6.5851002E-06	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	71.44	70.488	2	1.1728E-06	60785	160511_QHF_FH_JSI12i_2	105	73.362			1.1773	1.2442	3.3521	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2183	1.2741	NaN	1	0	Median	1.1378	1.2151	NaN	1	0	Median	34867000	18308000	16559000	0	0	0	0	0	0	22025000	11696000	10329000	12841000	6611800	6229600	41564	4398	39127	254194;254195	340993;340994;340995	340994			2	
QLGVYSPFVLLNTLMFFNTK	1	Unmodified	2331.2337	0.23371169	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		102.34	93.039	3	2.3757E-06	53854	160513_QHF_FH_JSI9Kac_6	77.08	68.261			0.77646	0.72193	11.014	2	1	Median	0.91154	0.78041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66139	0.66784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56039000	24522000	31517000	51305000	21400000	29905000	0	0	0	4734500	3122500	1612000	0	0	0	41565	2515	39128	254196;254197	340996;340997	340997			2	
QLHDDYFYHDEL	0	Unmodified	1593.6736	0.67358707	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.652	56.145	2	0.017267	48599	160511_QHF_FH_JSI11i_2	50.108	37.1			0.86783	0.85336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86783	0.85336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41435000	19663000	21772000	0	0	0	0	0	0	41435000	19663000	21772000	0	0	0	41566	2524	39129	254198	340998	340998			1	
QLHDEARK	1	Unmodified	995.51484	0.514842	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		1.6919	1.5033	3	0.003538	19	160511_QHF_FH_JSI11i_3	59.35	40.107			0.44508	0.39564	83.324	2	1	Median	0.85859	0.71316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.23073	0.21949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52146000	34706000	17440000	25449000	13206000	12243000	0	0	0	26698000	21500000	5197800	0	0	0	41567	1139	39130	254199;254200	340999;341000	340999			2	
QLHEDEEFAR	0	Unmodified	1272.5735	0.57347909	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	19.516	18.943	2;3	0.0030961	15455	160511_QHF_FH_JSI11i_2	49.466	37.522			2.1543	2.3334	29.71	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9321	1.9376	39.18	2	1	Median	2.1543	2.3334	NaN	1	1	Median	109390000	31189000	78200000	0	0	0	0	0	0	83792000	23661000	60131000	25597000	7528000	18069000	41568	1430	39131	254201;254202;254203	341001;341002;341003;341004	341004			4	
QLHELAPSIFFYLVDAEQGR	0	Unmodified	2332.1852	0.18518159	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	95.409	87.828	3	0.00013334	46998	160513_QHF_FH_JSI12Kac_6	104.86	90.245			0.67019	0.75201	60.063	2	2	Median	NaN	NaN	NaN	0	0	Median	0.96453	1.1499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46567	0.49178	NaN	1	1	Median	421870000	278470000	143400000	0	0	0	157110000	99227000	57884000	0	0	0	264760000	179240000	85517000	41569	3562	39132	254204;254205	341005;341006	341005			2	
QLHEQAMQFGQLLTHLDTTQQMIANSLK	1	Unmodified	3223.6118	0.61180222	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	101.36	101.36	4	1.0706E-06	87982	160511_QHF_FH_JSI12i_3	56.366	53.539			1.03	1.0184	0.97094	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0592	1.0115	NaN	1	0	Median	1.0015	1.0254	NaN	1	0	Median	579680000	252410000	327270000	0	0	0	0	0	0	185700000	78528000	107170000	393980000	173880000	220100000	41570	2441	39133	254206;254207	341007	341007			1	
QLHFQEK	1	Unmodified	928.47667	0.47666558	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	12.715	12.756	2;3	0.0078014	10173	160511_QHF_FH_JSI11i_3	50.703	39.83			1.3277	1.3013	26.858	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6498	1.5734	NaN	1	1	Median	1.0686	1.0762	NaN	1	0	Median	133790000	66116000	67674000	0	0	0	0	0	0	82075000	34057000	48018000	51715000	32059000	19656000	41571	5755	39134	254208;254209	341008;341009	341008			2	
QLHLNQLIR	0	Unmodified	1133.6669	0.66692597	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							3	2	1	1	48.117	47.211	3	4.5061E-12	38739	160511_QHF_FH_JSI9i_3	144.09	133.86			0.77978	0.84381	11.074	6	0	Median	1.1157	0.94017	10.887	2	0	Median	0.69375	0.8444	4.5038	2	0	Median	0.77506	0.72789	NaN	1	0	Median	0.78452	0.80441	NaN	1	0	Median	859550000	402400000	457150000	369540000	144820000	224720000	303580000	161270000	142310000	74277000	36648000	37629000	112150000	59662000	52493000	41572	1674	39135	254210;254211;254212;254213;254214;254215;254216	341010;341011;341012;341013;341014;341015;341016;341017;341018;341019	341013			10	
QLHSGGPENDVTK	1	Unmodified	1380.6634	0.66335673	5609	Q9Y448	KNSTRN	Small kinetochore-associated protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.25	5.63		3						1		1		2	1	14.989	9.9043	2;3	3.3885E-10	8764	160511_QHF_FH_JSI11i_2	114.83	78.14			0.693	0.6875	45.289	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53674	0.4991	NaN	1	1	Median	0.89475	0.947	NaN	1	0	Median	15416000	9910100	5505500	0	0	0	0	0	0	1344300	1204700	139650	14071000	8705500	5365800	41573	5609	39136	254217;254218;254219;254220	341020;341021;341022;341023	341022			4	
QLIAHLQVFSK	1	Unmodified	1282.7398	0.73975656	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	2	1	2	2	63.984	58.562	3	0.023678	51696	160511_QHF_FH_JSI11i_3	45.28	34.55			1.0243	1.0127	21.567	7	0	Median	1.0536	0.88036	19.801	2	0	Median	0.67011	0.78948	NaN	1	0	Median	0.83754	0.80682	34.482	2	0	Median	1.0402	1.094	5.2572	2	0	Median	203180000	119900000	83278000	47433000	26488000	20945000	36426000	24600000	11826000	55854000	35328000	20526000	63467000	33486000	29981000	41574	557	39137	254221;254222;254223;254224;254225;254226;254227	341024;341025	341024			0	
QLIAQVMLYSQGFR	0	Unmodified	1652.8708	0.87084709	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	1	2	3	3	86.136	77.664	2;3	2.3198E-67	41259	160513_QHF_FH_JSI12Kac_6	265.12	216.14			0.88111	0.93238	17.869	9	0	Median	1.5387	1.3256	NaN	1	0	Median	0.85942	1.0227	25.857	2	0	Median	0.87175	0.85787	17.667	3	0	Median	0.89303	0.93238	1.9431	3	0	Plateau	1147800000	609660000	538150000	108990000	44228000	64762000	674050000	371300000	302760000	194030000	109670000	84357000	170740000	84465000	86271000	41575	2517	39138	254228;254229;254230;254231;254232;254233;254234;254235;254236	341026;341027;341028;341029;341030;341031;341032;341033;341034;341035;341036;341037	341031			12	
QLICDPSYVK	1	Unmodified	1221.6064	0.60635913	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	45.904	43.213	2	0.0001898	38425	160511_QHF_FH_JSI9i_1	93.098	57.803			0.83753	0.8324	23.132	5	4	Median	1.0084	0.83401	NaN	1	1	Median	0.69658	0.8324	NaN	1	1	Median	0.79852	0.77785	9.0864	2	1	Median	1.2614	1.329	NaN	1	1	Median	861230000	457800000	403420000	99228000	55102000	44125000	222850000	122920000	99923000	315220000	178240000	136990000	223930000	101540000	122390000	41576	1702	39139	254237;254238;254239;254240;254241	341038;341039;341040;341041;341042;341043;341044	341044			7	
QLIDEGIAPEEGGVDAK	1	Unmodified	1739.8578	0.85775902	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.533	55.004	2	2.1476E-33	49926	160511_QHF_FH_JSI11i_1	157.2	129.77			0.97625	1.0614	36.911	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2154	1.378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78412	0.81759	NaN	1	1	Median	90917000	49474000	41443000	0	0	0	31837000	15379000	16458000	0	0	0	59080000	34095000	24985000	41577	3356	39140	254242;254243;254244;254245	341045;341046;341047;341048	341045			4	
QLIDITGK	1	Unmodified	886.51238	0.51238239	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			3	2	2	4	45.93	44.15	2	0.0010424	39781	160511_QHF_FH_JSI11i_1	94.806	23.51			0.71761	0.70401	67.368	11	5	Median	0.92298	0.76534	109.34	3	2	Median	0.49412	0.59774	1.5265	2	0	Median	0.45415	0.44257	65.646	2	1	Median	0.8595	0.90408	37.969	4	2	Median	1376600000	803270000	573360000	293110000	173280000	119830000	303120000	190800000	112320000	336430000	199940000	136490000	443970000	239260000	204710000	41578	2505	39141	254246;254247;254248;254249;254250;254251;254252;254253;254254;254255;254256	341049;341050;341051;341052;341053;341054;341055;341056;341057;341058;341059;341060;341061;341062;341063;341064	341049			16	
QLIDIVDQLK	1	Unmodified	1183.6812	0.68123863	4839	Q9HBE4	IL21	Interleukin-21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	103.39	103.3	2	0.00087087	89165	160511_QHF_FH_JSI12i_2	84.498	17.328			1.1414	1.249	20.691	4	0	Median	1.7989	1.5789	NaN	1	0	Median	1.036	1.2204	NaN	1	0	Median	1.2576	1.2784	NaN	1	0	Median	0.87522	0.95375	NaN	1	0	Median	91769000	43207000	48562000	17194000	5484300	11710000	16274000	8645300	7628800	20210000	8528100	11682000	38091000	20549000	17542000	41579	4839	39142	254257;254258;254259;254260	341065	341065			1	
QLIEAHEQGK	1	Unmodified	1151.5935	0.59348625	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.332	11.596	2	0.0016223	9043	160511_QHF_FH_JSI12i_2	76.465	54.958			0.44164	0.47648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44164	0.47648	NaN	1	1	Median	14408000	8563600	5844500	0	0	0	0	0	0	0	0	0	14408000	8563600	5844500	41580	4815	39143	254261	341066	341066			1	
QLIELDYLNPGSIR	0	Unmodified	1629.8726	0.87262123	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		90.291	89.783	2	2.1162E-06	78884	160511_QHF_FH_JSI11i_2	129.74	96.333			1.1226	1.2421	30.229	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81816	1.003	NaN	1	1	Median	1.5404	1.5381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77525000	43453000	34072000	0	0	0	31493000	20542000	10952000	46031000	22911000	23120000	0	0	0	41581	5301	39144	254262;254263	341067;341068	341067			2	
QLIEPVQYDEQGMAFSK	1	Unmodified	1981.9455	0.94552817	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	1	3	3	73.11	72.592	2;3	7.1648E-98	66212	160511_QHF_FH_JSI12i_1	260.19	246.23			0.75661	0.67698	34.177	7	4	Median	0.75661	0.64359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72591	0.67698	39.922	3	2	Median	0.94383	0.96255	27.51	3	2	Median	324280000	188000000	136270000	65787000	39941000	25846000	0	0	0	137980000	86232000	51745000	120510000	61828000	58683000	41582	2115	39145	254264;254265;254266;254267;254268;254269;254270;254271	341069;341070;341071;341072;341073;341074;341075;341076;341077;341078;341079;341080;341081;341082	341077			14	
QLIFTTEDNGK	1	Unmodified	1264.6299	0.62993134	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	44.69	44.219	2	1.5202E-07	40250	160511_QHF_FH_JSI12i_1	123.75	29.634			1.2787	1.5526	13.234	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.0599	1.2348	3.1541	2	2	Median	1.5199	1.4939	NaN	1	0	Median	1.5156	1.5926	NaN	1	0	Median	517090000	260010000	257080000	0	0	0	276010000	148530000	127480000	118710000	56209000	62496000	122380000	55271000	67106000	41583	4292	39146	254272;254273;254274;254275;254276	341083;341084;341085;341086;341087;341088;341089	341086			7	
QLIGLYTMAHNPNMTHLK	1	Unmodified	2081.055	0.055035819	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		64.302	64.302	3	0.014409	53623	160511_QHF_FH_JSI9i_3	36.593	26.396			0.67518	0.63722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67518	0.63722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22379000	14271000	8107500	0	0	0	0	0	0	22379000	14271000	8107500	0	0	0	41584	4794	39147	254277;254278	341090;341091	341091			2	
QLILEEIFTSLAR	0	Unmodified	1531.861	0.86099391	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	102.75	102.64	2	0.0026734	48862	160513_QHF_FH_JSI12Kac_6	75.819	38.628			0.98183	0.97129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98183	0.97129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33242000	13642000	19600000	0	0	0	0	0	0	33242000	13642000	19600000	0	0	0	41585	3063	39148	254279;254280	341092;341093	341093			2	
QLILLAQQMK	1	Oxidation (M)	1200.69	0.69002918	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS			15	0								3		2	1			64.531	53.849	2	0.0057559	28303	160513_QHF_FH_JSI9Kac_5	75.213	36.437			0.74358	0.95516	42.172	3	2	Plateau	0.83762	0.68492	47.033	2	2	Median	0.93409	1.0732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7321500	4539500	2782000	5399000	3416700	1982300	1922400	1122800	799670	0	0	0	0	0	0	41586	3790	39149	254281;254282;254283	341094;341095;341096	341094		2294	2	
QLILLAQQMK	1	Unmodified	1184.6951	0.69511455	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		66.962	66.22	2	0.00023002	57782	160511_QHF_FH_JSI11i_2	91.853	63.127			1.2926	1.1901	19.579	2	2	Median	1.219	1.0362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3707	1.3668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74977000	42311000	32666000	29775000	18368000	11407000	0	0	0	45202000	23943000	21259000	0	0	0	41587	3790	39149	254284;254285	341097;341098	341098			2	
QLILVLCSEENMQK	1	Unmodified	1703.8586	0.85862742	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.758	75.125	2	8.5798E-11	65953	160511_QHF_FH_JSI11i_2	115.18	90.832			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41588	1544	39150	254286	341099	341099			1	
QLIMANPQMQQLIQR	0	Unmodified	1810.9546	0.95459349	5299;5427	Q9UHD9;Q9UMX0	UBQLN2;UBQLN1	Ubiquilin-2;Ubiquilin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.611	1	7	7							2	4	4	5	77.859	77.17	2;3	1.2973E-51	69029	160511_QHF_FH_JSI11i_3	262.61	186.46			1.0564	0.98833	43.914	14	2	Median	1.2251	1.0495	5.9464	2	0	Median	0.97969	1.1753	28.963	4	0	Median	0.96024	0.93708	70.238	4	1	Median	0.97002	1.0399	14.137	4	1	Median	1549200000	852120000	697110000	303750000	157960000	145780000	352530000	203510000	149020000	379100000	213290000	165810000	513850000	277360000	236490000	41589	5299;5427	39151	254287;254288;254289;254290;254291;254292;254293;254294;254295;254296;254297;254298;254299;254300;254301	341100;341101;341102;341103;341104;341105;341106;341107;341108;341109;341110;341111;341112;341113;341114;341115;341116;341117;341118;341119;341120;341121;341122;341123;341124;341125;341126	341103			27	
QLIMQSEMR	0	Unmodified	1134.5525	0.55254942	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	39.344	38.218	2	0.0079395	33626	160511_QHF_FH_JSI10i_2	61.679	44.053			1.2728	1.3054	4.785	3	1	Median	1.4375	1.2488	NaN	1	0	Median	1.0849	1.3054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2728	1.3741	NaN	1	0	Median	156620000	75819000	80805000	56590000	22650000	33940000	42919000	20788000	22130000	0	0	0	57116000	32381000	24735000	41590	4843	39152	254302;254303;254304	341127;341128;341129	341129			3	
QLIQPIAEK	1	Unmodified	1038.6073	0.6073454	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	40.089	39.647	2	0.0038734	35376	160511_QHF_FH_JSI10i_1	58.426	13.659			1.2906	1.3855	18.386	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89601	1.0481	NaN	1	0	Median	1.5472	1.4827	NaN	1	0	Median	1.2906	1.3855	NaN	1	0	Median	114300000	53542000	60760000	0	0	0	40908000	23741000	17167000	36885000	15896000	20988000	36509000	13905000	22604000	41591	3038	39153	254305;254306;254307	341130;341131	341131			1	
QLISQIGNAMGYVR	0	Unmodified	1548.8082	0.80824683	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			74.213	72.773	2	0.0033791	61030	160511_QHF_FH_JSI10i_3	56.783	32.439			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41592	2793	39154	254308	341132	341132			1	
QLITVTMSSDSR	0	Unmodified	1336.6657	0.66566492	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	48.244	47.723	2	0.0047949	40654	160511_QHF_FH_JSI12i_2	55.401	36.158			0.80679	0.79306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80679	0.79306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42151000	27006000	15144000	0	0	0	0	0	0	42151000	27006000	15144000	0	0	0	41593	122	39155	254309;254310	341133;341134	341133			2	
QLIVANAGDSR	0	Unmodified	1142.6044	0.60438529	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			2	2	4	1	29.585	26.724	2	4.3151E-07	23423	160511_QHF_FH_JSI10i_2	117.02	90.06			1.1082	1.1675	20.355	8	3	Median	1.4073	1.1912	NaN	1	0	Median	1.005	1.2223	13.091	2	0	Median	1.1052	1.1092	25.505	4	2	Median	1.1019	1.265	NaN	1	1	Median	747890000	369110000	378780000	91036000	43594000	47443000	82896000	47724000	35171000	508200000	249450000	258760000	65755000	28344000	37411000	41594	279	39156	254311;254312;254313;254314;254315;254316;254317;254318;254319	341135;341136;341137;341138;341139;341140;341141;341142;341143;341144	341144			10	
QLIVGVNK	1	Unmodified	869.53345	0.53345218	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.26	8	4	4		3	4	4	4	4	8	9	9	9	43.947	38.554	2	2.156E-10	28484	160511_QHF_FH_JSI10i_3	167.25	41.207			0.95285	0.97989	23.09	34	4	Median	1.1417	0.99828	29.648	7	1	Median	0.87235	1.0085	17.673	9	1	Median	0.99742	0.96935	29.815	9	1	Median	0.90851	0.94577	17.228	9	1	Median	70351000000	30098000000	40254000000	13910000000	5751900000	8157900000	18476000000	8010500000	10465000000	22347000000	9176800000	13170000000	15619000000	7158500000	8460600000	41595	2072;2231	39157	254320;254321;254322;254323;254324;254325;254326;254327;254328;254329;254330;254331;254332;254333;254334;254335;254336;254337;254338;254339;254340;254341;254342;254343;254344;254345;254346;254347;254348;254349;254350;254351;254352;254353;254354	341145;341146;341147;341148;341149;341150;341151;341152;341153;341154;341155;341156;341157;341158;341159;341160;341161;341162;341163;341164;341165;341166;341167;341168;341169;341170;341171;341172;341173;341174;341175;341176;341177;341178;341179;341180;341181;341182;341183;341184;341185;341186;341187;341188;341189;341190;341191;341192;341193;341194;341195;341196;341197;341198;341199;341200;341201;341202;341203;341204;341205;341206;341207;341208;341209;341210;341211;341212;341213;341214;341215;341216;341217;341218;341219;341220;341221	341157			77	
QLIVGVNKMDSTEPPYSQKR	2	Acetyl (K);Oxidation (M)	2347.1842	0.18419532	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	1	2			By MS/MS		15.7	0.471								1	2			3		62.816	52.71	3	0.0013323	28598	160513_QHF_FH_JSI11Kac_6	77.39	51.566			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22929000	22929000	0	0	0	0	0	0	0	22929000	22929000	0	0	0	0	41596	2072	39158	254355;254356;254357	341222;341223;341224	341223	2146;2152	1734	3	
QLIVGVNKMDSTEPPYSQKR	2	Acetyl (K)	2331.1893	0.18928069	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	70.502	61.553	3	1.3322E-23	33325	160513_QHF_FH_JSI11Kac_6	200.99	161.34			0.72315	0.87681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72315	0.87681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89133000	79362000	9771600	0	0	0	21227000	11455000	9771600	59689000	59689000	0	8217600	8217600	0	41597	2072	39158	254358;254359;254360	341225;341226;341227;341228	341226	2146;2152		4	
QLIVPPHLAHGESGAR	0	Unmodified	1680.906	0.90598704	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		1	3	37.796	37.489	3;4	1.9159E-05	31448	160511_QHF_FH_JSI12i_3	91.657	84.426			1.0357	0.98864	26.287	5	2	Median	0.99371	0.84951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0357	0.98864	NaN	1	0	Median	1.0971	1.1074	31.6	3	2	Median	635690000	308500000	327190000	88128000	46225000	41903000	0	0	0	186670000	94460000	92211000	360890000	167820000	193080000	41598	3973	39159	254361;254362;254363;254364;254365	341229;341230;341231;341232;341233;341234	341234			6	
QLIYNYPEQLFGAAGVMAIEHADFAGVER	0	Oxidation (M)	3224.5601	0.56008422	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	95.343	85.901	3	4.0786E-41	46621	160513_QHF_FH_JSI12Kac_6	155.34	139.07			1.0011	1.076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0011	1.076	NaN	1	0	Median	56792000	27175000	29617000	0	0	0	0	0	0	0	0	0	56792000	27175000	29617000	41599	2090	39160	254366	341235	341235		1754	1	
QLKEFIQQPENK	2	Acetyl (K)	1542.8042	0.80420731	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	62.311	51.614	2	5.4686E-08	28667	160513_QHF_FH_JSI12Kac_4	113.63	88.192			0.75644	0.86605	19.658	2	0	Median	NaN	NaN	NaN	0	0	Median	0.62398	0.75366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91701	0.9952	NaN	1	0	Median	8960200	5380200	3580000	0	0	0	4802700	3393000	1409700	0	0	0	4157500	1987200	2170300	41600	4205	39161	254367;254368;254369	341236;341237;341238;341239;341240	341239	3078		5	
QLKSDSHGPK	2	Acetyl (K)	1137.5778	0.57783619	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							3	3			2	4		10.799	1.9669	2;3	0.00027488	4038	160513_QHF_FH_JSI11Kac_5	84.479	58.037			0.29439	0.28905	122.37	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2087	1.4337	NaN	1	0	Median	0.28835	0.28491	95.311	4	1	Median	NaN	NaN	NaN	0	0	Median	42439000	34446000	7992700	0	0	0	2876600	974200	1902400	39562000	33472000	6090300	0	0	0	41601	2252	39162	254370;254371;254372;254373;254374;254375	341241;341242;341243;341244;341245;341246	341244	2356		6	
QLLAGGIAGAVSR	0	Unmodified	1211.6986	0.69862003	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.96			4					3	5	3	4	4	1	60.342	54.768	2	9.0886E-07	47039	160511_QHF_FH_JSI12i_3	128.88	69.531			0.88647	0.91066	22.256	8	2	Median	1.376	1.1032	18.27	3	1	Median	0.82963	0.95266	0.63453	2	0	Median	0.74371	0.70576	30.305	2	1	Median	0.82209	0.83861	NaN	1	0	Median	514280000	267060000	247220000	107580000	43741000	63840000	166870000	88867000	77998000	107690000	62002000	45691000	132140000	72451000	59689000	41602	3071	39163	254376;254377;254378;254379;254380;254381;254382;254383;254384;254385;254386;254387	341247;341248;341249;341250;341251;341252;341253;341254;341255;341256;341257;341258;341259;341260;341261;341262	341260			16	
QLLAPGNSAGAFLIR	0	Unmodified	1526.8569	0.85691158	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			80.303	78.953	2	0.00069868	66324	160511_QHF_FH_JSI10i_3	68.551	42.037			0.76241	0.87383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76241	0.87383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11379000	4447800	6931300	0	0	0	11379000	4447800	6931300	0	0	0	0	0	0	41603	885	39164	254388	341263	341263			1	
QLLAPVVK	1	Unmodified	866.55894	0.55893865	2445	Q13576	IQGAP2	Ras GTPase-activating-like protein IQGAP2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	2	3	46.41	41.936	2	0.0010531	38106	160511_QHF_FH_JSI12i_1	94.662	0			0.9983	0.98868	12.081	8	0	Median	1.1591	0.96324	NaN	1	0	Median	0.80816	0.93951	23.95	2	0	Median	1.089	1.0502	9.3824	2	0	Median	0.99808	0.99462	9.3071	3	0	Plateau	1262800000	587180000	675580000	87652000	37316000	50336000	324330000	154760000	169570000	337740000	148730000	189010000	513030000	246360000	266670000	41604	2445	39165	254389;254390;254391;254392;254393;254394;254395;254396	341264;341265;341266;341267;341268	341265			5	
QLLAQGK	1	Unmodified	756.44939	0.4493882	5857				yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.927	11.078	2	0.045601	8470	160511_QHF_FH_JSI9i_1	44.611	1.6107	+		0.99594	0.81759	NaN	1	0	Median	0.99594	0.81759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107620000	50970000	56649000	107620000	50970000	56649000	0	0	0	0	0	0	0	0	0	41605	5857	39166	254397	341269	341269			1	
QLLCGAAIGTHEDDK	1	Unmodified	1626.7672	0.76716988	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.02		4					2	6		2	4	3	3	42.794	36.284	2;3	2.1164E-17	18671	160513_QHF_FH_JSI10Kac_5	144.18	131.82			0.99525	1.1362	23.164	10	0	Median	1.2422	1.0715	12.199	2	0	Median	0.94631	1.1369	1.4097	3	0	Plateau	0.71118	0.70629	17.658	2	0	Median	1.0447	1.1534	8.0446	3	0	Plateau	395600000	211890000	183710000	55549000	28343000	27206000	100370000	55605000	44763000	123360000	75177000	48184000	116320000	52769000	63555000	41606	1015	39167	254398;254399;254400;254401;254402;254403;254404;254405;254406;254407;254408;254409	341270;341271;341272;341273;341274;341275;341276;341277;341278;341279;341280;341281;341282;341283;341284;341285;341286	341285			16	
QLLCGAAVGTR	0	Unmodified	1144.6023	0.6022768	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	15	0								3			1	1	1	43.144	33.089	2	0.0021347	18908	160513_QHF_FH_JSI11Kac_5	72.643	30.534			0.91312	1.0771	42.897	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91312	1.0771	NaN	1	0	Median	0.7209	0.70258	NaN	1	0	Median	1.5176	1.6569	NaN	1	0	Median	13623000	7408500	6214100	0	0	0	3553600	1920700	1632900	6181500	3909500	2272000	3887600	1578300	2309300	41607	1182	39168	254410;254411;254412	341287	341287			1	
QLLCGAAVGTREDDK	1	Unmodified	1631.7937	0.79371898	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	39.662	29.778	3	0.0064757	16010	160513_QHF_FH_JSI12Kac_5	47.532	34.128			1.262	1.4975	35.094	3	1	Median	NaN	NaN	NaN	0	0	Median	1.262	1.4975	NaN	1	1	Median	0.85277	0.85698	NaN	1	0	Median	1.4524	1.6377	NaN	1	0	Median	20863000	10529000	10334000	0	0	0	5859200	2356300	3502900	8283800	5035300	3248500	6720200	3137800	3582400	41608	1182	39169	254413;254414;254415	341288;341289;341290;341291	341290			4	
QLLDDEEQLTAK	1	Unmodified	1401.6987	0.69873919	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	49.539	47.113	2	5.1859E-11	42815	160511_QHF_FH_JSI12i_1	174.57	154.81			0.96528	0.95105	25.193	5	0	Median	0.96528	0.78692	NaN	1	0	Median	1.0574	1.211	35.031	2	0	Median	1.0764	1.0347	NaN	1	0	Median	0.88828	0.95105	NaN	1	0	Median	1177000000	583690000	593330000	274330000	141990000	132340000	302850000	138500000	164350000	331020000	165020000	166000000	268820000	138180000	130640000	41609	4399	39170	254416;254417;254418;254419;254420	341292;341293;341294;341295;341296;341297;341298;341299;341300	341294			9	
QLLDEVEVATEPAGSR	0	Unmodified	1712.8581	0.85809337	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	62.455	61.978	2	3.3044E-30	56465	160511_QHF_FH_JSI12i_1	192.14	166.1			1.1858	1.1649	6.8649	4	2	Median	NaN	NaN	NaN	0	0	Median	0.91794	1.0848	NaN	1	0	Median	1.2994	1.2223	6.7699	2	2	Median	1.1356	1.1645	NaN	1	0	Median	258320000	132580000	125740000	0	0	0	73613000	38465000	35148000	130150000	62224000	67925000	54560000	31891000	22668000	41610	2082	39171	254421;254422;254423;254424;254425	341301;341302;341303;341304;341305;341306;341307;341308	341304			8	
QLLDFSQK	1	Unmodified	977.5182	0.51819605	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							4	2	2	2	48.042	47.125	2	6.3977E-07	41205	160511_QHF_FH_JSI9i_2	157.34	94.625			0.83681	0.9806	102.89	9	1	Median	0.74614	0.63554	36.971	3	1	Median	0.74285	0.89398	13.079	2	0	Median	0.94091	0.94035	19.221	2	0	Median	3.9396	4.2727	197.76	2	0	Median	1459300000	722640000	736620000	295860000	162800000	133060000	340640000	179210000	161430000	572380000	311120000	261260000	250380000	69512000	180870000	41611	231	39172	254426;254427;254428;254429;254430;254431;254432;254433;254434;254435	341309;341310;341311;341312;341313;341314;341315;341316	341312			8	
QLLDMHFK	1	Unmodified	1030.527	0.52698659	1671	P49711	CTCF	Transcriptional repressor CTCF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	3	1	46.605	45.932	2;3	0.0014492	43780	160511_QHF_FH_JSI11i_2	57.96	47.087			0.86921	1.0031	68.79	6	2	Median	1.2535	1.1061	NaN	1	0	Median	0.85552	1.0454	NaN	1	0	Median	0.61025	0.57469	91.226	3	2	Median	0.88311	0.96243	NaN	1	0	Median	222350000	142520000	79832000	16569000	8271600	8297700	32363000	17778000	14585000	154690000	105930000	48757000	18733000	10541000	8192400	41612	1671	39173	254436;254437;254438;254439;254440;254441	341317;341318;341319;341320;341321;341322;341323;341324	341321			8	
QLLDQVEQIQK	1	Unmodified	1340.73	0.72997974	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	1	3	55.78	52.019	2	1.0396E-47	47029	160511_QHF_FH_JSI11i_1	215.87	43.6			0.90561	0.91384	21.864	6	3	Median	1.3535	1.1008	NaN	1	1	Median	1.1098	1.3002	NaN	1	1	Median	0.88982	0.86734	NaN	1	0	Median	0.75939	0.81026	15.362	3	1	Median	1390800000	685270000	705500000	299120000	136810000	162310000	351180000	185150000	166040000	385860000	182140000	203720000	354610000	181190000	173430000	41613	3296	39174	254442;254443;254444;254445;254446;254447	341325;341326;341327;341328;341329;341330;341331;341332	341325			8	
QLLDTTDIQGEEFAK	1	Unmodified	1706.8363	0.8362953	324	O43353	RIPK2	Receptor-interacting serine/threonine-protein kinase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	66.356	65.893	2	6.5559E-05	59716	160511_QHF_FH_JSI10i_1	115.34	79.69			0.53099	0.88708	61.771	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.84762	0.95978	NaN	1	1	Median	0.33263	0.31722	NaN	1	1	Median	0.89199	0.88708	NaN	1	1	Median	60545000	45112000	15433000	0	0	0	22848000	16815000	6033200	21650000	16918000	4732300	16047000	11379000	4667800	41614	324	39175	254448;254449;254450	341333;341334;341335	341335			3	
QLLEENEEK	1	Unmodified	1130.5455	0.54553301	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	20.005	19.496	2	5.3999E-06	16431	160511_QHF_FH_JSI9i_1	115.86	61.893			0.84843	0.84149	6.4958	4	0	Median	1.0107	0.81678	NaN	1	0	Median	0.72636	0.86694	NaN	1	0	Median	0.82501	0.79988	NaN	1	0	Median	0.87251	0.92411	NaN	1	0	Median	225380000	116970000	108410000	49387000	19306000	30081000	54817000	30103000	24714000	59963000	30989000	28974000	61217000	36576000	24641000	41615	2549	39176	254451;254452;254453;254454	341336;341337;341338;341339	341339			4	
QLLEGELETLR	0	Unmodified	1299.7034	0.70343063	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		104.07	103.97	2	0.049879	91704	160511_QHF_FH_JSI11i_2	43.512	14.039			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6198800	6198800	0	0	0	0	0	0	0	6198800	6198800	0	0	0	0	41616	416	39177	254455	341340	341340			1	
QLLEQPQAEAK	1	Unmodified	1253.6616	0.66156582	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	29.705	28.974	2	4.0252E-10	25653	160511_QHF_FH_JSI10i_1	139.43	78.997			0.84122	0.86866	14.82	5	2	Median	0.98982	0.82276	25.09	2	2	Median	0.75566	0.89275	NaN	1	0	Median	0.75771	0.72698	NaN	1	0	Median	0.84122	0.86866	NaN	1	0	Median	212400000	113590000	98807000	65496000	38435000	27062000	45966000	27574000	18392000	48524000	23246000	25277000	52413000	24338000	28075000	41617	1003	39178	254456;254457;254458;254459;254460	341341;341342;341343;341344;341345	341343			5	
QLLFFYK	1	Unmodified	957.53239	0.53238955	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	80.837	71.707	2	0.00065002	39412	160513_QHF_FH_JSI11Kac_6	114.54	61.856			1.3515	1.414	61.95	3	2	Median	4.3248	3.6302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1636	1.1294	NaN	1	0	Median	1.3515	1.414	NaN	1	1	Median	332560000	94729000	237830000	183130000	28295000	154830000	0	0	0	100140000	41396000	58740000	49293000	25038000	24255000	41618	2661	39179	254461;254462;254463	341346;341347;341348	341346			3	
QLLFPAEEDNGAGPPRDGDGVPGGGPLSPAR	0	Unmodified	3042.4795	0.47952571	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		74.816	74.816	3	4.7462E-06	66776	160511_QHF_FH_JSI11i_3	43.801	36.926			1.1625	1.0991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1625	1.0991	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22872000	12030000	10842000	0	0	0	0	0	0	22872000	12030000	10842000	0	0	0	41619	3900	39180	254464	341349	341349			1	
QLLGEHLTAILQK	1	Unmodified	1462.8508	0.85076357	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	4.81		3	8						2	3	4	3	3	71.527	69.396	2;3	1.3731E-41	62023	160511_QHF_FH_JSI11i_3	166.62	134.46			1.0812	1.0438	30.999	13	3	Median	1.2543	1.0573	24.389	3	0	Median	1.0189	1.2216	15.704	4	2	Median	0.96236	0.8125	15.445	3	0	Plateau	1.4072	1.4057	57.289	3	1	Plateau	2701400000	1394900000	1306500000	378980000	177230000	201750000	595160000	326320000	268850000	623890000	338000000	285890000	1103400000	553390000	550000000	41620	2456;2457	39181	254465;254466;254467;254468;254469;254470;254471;254472;254473;254474;254475;254476;254477	341350;341351;341352;341353;341354;341355;341356;341357;341358;341359;341360;341361;341362;341363;341364;341365;341366;341367;341368;341369;341370;341371	341351			22	
QLLGHMEDLEGDAQSVLDAR	0	Unmodified	2196.0481	0.048095765	5091	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	85.915	85.839	3	1.3003E-07	74375	160511_QHF_FH_JSI12i_3	98.269	88.899			0.80216	0.80159	25.375	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69781	0.66993	NaN	1	1	Median	0.92211	0.95913	NaN	1	0	Median	94934000	52144000	42789000	0	0	0	0	0	0	54706000	31059000	23647000	40228000	21086000	19142000	41621	5091	39182	254478;254479;254480	341372;341373;341374;341375;341376	341375			5	
QLLGLQPISTVSPLHR	0	Unmodified	1758.0152	0.015203139	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			78.656	77.27	3	0.00021216	63458	160511_QHF_FH_JSI9i_3	60.549	55.494			1.5015	1.4898	15.477	2	0	Median	1.5965	1.3354	NaN	1	0	Median	1.4121	1.6621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31994000	16677000	15316000	15918000	6766300	9152100	16075000	9911100	6164000	0	0	0	0	0	0	41622	5369	39183	254481;254482	341377;341378	341378			2	
QLLHEKIR	1	Acetyl (K)	1077.6295	0.62947783	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	34.539	25.597	2	0.0032364	14500	160513_QHF_FH_JSI10Kac_6	92.439	28.96			0.88619	0.92994	15.526	4	0	Median	1.125	0.93317	NaN	1	0	Median	0.89568	1.0361	NaN	1	0	Median	0.73537	0.71904	NaN	1	0	Median	0.8768	0.92672	NaN	1	0	Median	37303000	20344000	16958000	6079200	2541400	3537800	12055000	6404600	5650200	12312000	7771500	4540400	6856700	3626600	3230100	41623	1945	39184	254483;254484;254485;254486	341379;341380;341381;341382;341383;341384	341384	1952		6	
QLLHKLTER	1	Acetyl (K)	1178.6772	0.6771563	5811				yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5		2	2	3	71.797	62.241	2	0.0027699	34081	160513_QHF_FH_JSI10Kac_6	82.452	14.472	+		1.0603	1.1066	130.32	7	1	Median	NaN	NaN	NaN	0	0	Median	1.094	1.2788	10.675	2	0	Median	1.1433	1.0787	0	2	0	Median	1.0603	1.1066	196.33	3	1	Plateau	471620000	242660000	228960000	0	0	0	118010000	60161000	57851000	270140000	138030000	132110000	83472000	44473000	38999000	41624	5811	39185	254487;254488;254489;254490;254491;254492;254493	341385;341386;341387;341388;341389	341389	3568		5	
QLLHLAEEK	1	Unmodified	1079.5975	0.597509	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.442		11	4							2	2	4	7	31.952	31.244	2;3	0.00020137	26868	160511_QHF_FH_JSI12i_2	70.399	53.681			0.84054	0.76866	50.978	15	8	Median	0.71479	0.60089	34.824	2	0	Median	0.85799	1.0497	5.7103	2	0	Median	0.88	0.88113	39.942	4	3	Median	0.58886	0.63348	66.913	7	5	Median	1869100000	1022300000	846740000	159330000	88510000	70825000	245200000	137270000	107930000	514150000	259020000	255140000	950380000	537530000	412850000	41625	2147	39186	254494;254495;254496;254497;254498;254499;254500;254501;254502;254503;254504;254505;254506;254507;254508	341390;341391;341392;341393;341394;341395;341396;341397;341398;341399;341400;341401;341402;341403;341404;341405;341406	341391			17	
QLLHNFPPDQLTSSGAPFWSGPK	1	Unmodified	2523.2547	0.25465814	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.61	0.487		12	19							8	8	5	10	89.632	88.987	3;4	3.6982E-38	78970	160511_QHF_FH_JSI11i_3	185.41	178.68			0.90117	0.92155	83.491	29	19	Median	1.1401	0.94132	62.348	7	2	Median	1.068	1.2555	114.29	8	7	Median	0.90823	0.90212	96.587	5	3	Median	0.84755	0.85988	10.898	9	7	Median	3706700000	1448400000	2258300000	462520000	213940000	248570000	1056300000	324920000	731370000	1118000000	329220000	788770000	1069900000	580300000	489570000	41626	1208	39187	254509;254510;254511;254512;254513;254514;254515;254516;254517;254518;254519;254520;254521;254522;254523;254524;254525;254526;254527;254528;254529;254530;254531;254532;254533;254534;254535;254536;254537;254538;254539	341407;341408;341409;341410;341411;341412;341413;341414;341415;341416;341417;341418;341419;341420;341421;341422;341423;341424;341425;341426;341427;341428;341429;341430;341431;341432;341433;341434;341435;341436;341437;341438;341439;341440;341441;341442;341443;341444;341445;341446;341447;341448;341449;341450;341451;341452;341453;341454;341455;341456;341457;341458;341459;341460;341461;341462;341463;341464;341465;341466;341467;341468;341469;341470;341471;341472;341473;341474;341475	341414			69	
QLLHSPFFK	1	Unmodified	1115.6128	0.61276513	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.49	55.655	3	9.5906E-05	47408	160511_QHF_FH_JSI12i_3	71.451	47.421			1.0672	1.0099	7.2085	4	0	Median	1.2066	0.99602	NaN	1	0	Median	0.98433	1.1554	NaN	1	0	Median	1.0712	0.99015	NaN	1	0	Median	1.0633	1.0239	NaN	1	0	Median	130150000	61195000	68959000	21091000	11101000	9990100	25763000	14175000	11588000	38684000	15420000	23264000	44616000	20499000	24118000	41627	719	39188	254540;254541;254542;254543	341476;341477;341478;341479;341480	341479			5	
QLLIQQK	1	Unmodified	869.53345	0.53345218	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		44.437	34.28	2	0.0092953	19630	160513_QHF_FH_JSI10Kac_4	85.306	3.5225			1.0599	1.1071	11.372	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92755	1.0216	NaN	1	0	Median	1.2111	1.1998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	765390000	383120000	382270000	0	0	0	352200000	185240000	166970000	413190000	197890000	215300000	0	0	0	41628	2627	39189	254544;254545	341481;341482	341481			2	
QLLLESQSQLDAAK	1	Unmodified	1542.8253	0.82533668	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	56.437	55.694	2	3.8035E-31	50416	160511_QHF_FH_JSI11i_1	197.07	170.18			0.86062	0.87365	16.564	4	1	Median	1.0141	0.84938	28.519	2	1	Median	0.75693	0.88203	NaN	1	0	Median	0.87336	0.86535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	336630000	174490000	162140000	101290000	51333000	49958000	105650000	62814000	42831000	129690000	60340000	69351000	0	0	0	41629	5213	39190	254546;254547;254548;254549;254550	341483;341484;341485;341486;341487;341488;341489;341490;341491;341492	341483			10	
QLLLFHNAVSAYFAGNQK	1	Unmodified	2020.053	0.053045209	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	3	2	1	1	84.986	78.719	2;3	6.1495E-143	40810	160513_QHF_FH_JSI9Kac_6	311.69	262.19			0.86781	0.9239	24.547	7	3	Median	1.1591	1.3851	19.355	3	2	Plateau	0.67458	0.80024	10.54	2	1	Median	0.86781	0.83506	NaN	1	0	Median	0.86145	0.9239	NaN	1	0	Median	1464500000	789860000	674590000	417790000	176120000	241680000	610220000	335760000	274450000	279720000	181240000	98485000	156720000	96743000	59977000	41630	1795	39191	254551;254552;254553;254554;254555;254556;254557	341493;341494;341495;341496;341497;341498;341499;341500;341501;341502	341498			10	
QLLLFQFAHHLELWR	0	Unmodified	1950.0628	0.062822034	3954	Q969X6	CIRH1A	Cirhin	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			91.262	85.542	3;4	1.1068E-08	48786	160513_QHF_FH_JSI10Kac_6	112.72	97.485			0.83584	0.99341	0.046954	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83584	0.99341	0.046954	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193900000	100190000	93714000	0	0	0	193900000	100190000	93714000	0	0	0	0	0	0	41631	3954	39192	254558;254559	341503;341504	341504			1	
QLLLIAGLTR	0	Unmodified	1096.6968	0.69682911	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.777	76.184	2	0.00010828	42027	160513_QHF_FH_JSI10Kac_6	99.815	69.222			0.52913	0.61807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52913	0.61807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117520000	78535000	38987000	0	0	0	117520000	78535000	38987000	0	0	0	0	0	0	41632	5350	39193	254560	341505	341505			1	
QLLLSFKPVMQK	2	Unmodified	1430.8319	0.83194239	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6	5.48			10						3	4	6	3		73.835	70.736	2;3	0.00020321	63163	160511_QHF_FH_JSI11i_3	72.29	61.02			0.73953	0.72755	9.3187	3	3	Plateau	1.0314	0.85329	NaN	1	1	Median	0.67328	0.78893	11.519	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187440000	102700000	84746000	45599000	21732000	23868000	141850000	80968000	60878000	0	0	0	0	0	0	41633	2084	39194	254561;254562;254563;254564;254565;254566;254567;254568;254569;254570;254571;254572;254573	341506;341507;341508;341509;341510;341511;341512;341513;341514;341515;341516;341517;341518	341506			13	
QLLLSFKPVMQK	2	Oxidation (M)	1446.8269	0.82685701	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			62.238	60.721	2;3	0.0031903	49915	160511_QHF_FH_JSI9i_3	74.162	47.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41634	2084	39194	254574;254575	341519;341520	341520		1745	2	
QLLLSTSMDRDVK	1	Unmodified	1504.7919	0.79192806	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		49.24	49.24	2	4.2307E-05	43563	160511_QHF_FH_JSI11i_3	87.298	68.027			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41635	3736	39195	254576;254577	341521;341522	341521			2	
QLLLTADDR	0	Unmodified	1043.5611	0.56112349	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	2	3	42.073	40.295	2	2.6581E-06	36299	160511_QHF_FH_JSI11i_1	144.5	101.9			0.87697	0.86572	11.856	10	2	Median	1.0295	0.85346	5.6715	2	0	Median	0.72781	0.86174	19.877	3	2	Median	0.85132	0.86127	1.3828	2	0	Median	0.86221	0.97291	12.145	3	0	Median	6389800000	3433700000	2956100000	1036900000	509130000	527780000	2169100000	1204600000	964430000	1920200000	1010200000	909950000	1263600000	709690000	553940000	41636	803	39196	254578;254579;254580;254581;254582;254583;254584;254585;254586;254587	341523;341524;341525;341526;341527;341528;341529;341530;341531;341532;341533;341534;341535;341536;341537;341538	341524			16	
QLLLTADDRVNPCIGGVILFHETLYQK	1	Unmodified	3112.6379	0.63794061	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.68		4	5						7	3	3	6	4	95.751	92.164	3;4	1.9391E-201	46640	160513_QHF_FH_JSI10Kac_6	290.02	223.63			1.0202	1.0432	26.591	16	9	Median	1.0167	0.8826	8.4171	3	0	Median	0.94724	1.1223	8.7302	3	2	Median	0.9223	0.87157	41.104	6	5	Median	0.99751	1.0584	5.5296	4	2	Linear	4803100000	2394700000	2408400000	506600000	242210000	264390000	1114700000	533080000	581650000	2091300000	1094000000	997280000	1090500000	525450000	565050000	41637	803	39197	254588;254589;254590;254591;254592;254593;254594;254595;254596;254597;254598;254599;254600;254601;254602;254603	341539;341540;341541;341542;341543;341544;341545;341546;341547;341548;341549;341550;341551;341552;341553;341554;341555;341556	341555			18	
QLLLTEGPHLYYVDPVNK	1	Unmodified	2098.1099	0.10989139	298	O15530	PDPK1	3-phosphoinositide-dependent protein kinase 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			82.132	81.465	3	9.4209E-05	72512	160511_QHF_FH_JSI10i_2	80.859	57.522			0.67137	0.82116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67137	0.82116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38742000	28259000	10483000	0	0	0	38742000	28259000	10483000	0	0	0	0	0	0	41638	298	39198	254604	341557	341557			1	
QLLLTPNAVVIVEDAK	1	Unmodified	1721.9927	0.99273636	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	95.959	95.731	2	9.8215E-12	82496	160511_QHF_FH_JSI12i_2	113.77	80.358			1.1139	1.1459	6.7406	3	3	Plateau	1.1715	1.0375	NaN	1	1	Median	0.80775	1.028	NaN	1	1	Median	1.1139	1.1603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49851000	27262000	22589000	16146000	8939600	7206800	12058000	8005400	4052100	21647000	10317000	11330000	0	0	0	41639	100	39199	254605;254606;254607;254608;254609	341558;341559;341560;341561;341562	341558			5	
QLLMELGQNNDSEIEENKPK	2	Unmodified	2328.1267	0.12674002	321	O43314	PPIP5K2	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		59.027	59.027	3	4.6411E-17	52382	160511_QHF_FH_JSI11i_3	119.38	103.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41640	321	39200	254610;254611	341563;341564	341563			2	
QLLMLQSLE	0	Unmodified	1073.5791	0.57908174	1809	P53680	AP2S1	AP-2 complex subunit sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	91.605	89.197	2	0.00018279	81755	160511_QHF_FH_JSI9i_1	86.472	63.453			1.0545	1.0773	20.134	5	1	Median	1.2977	1.1029	NaN	1	0	Median	0.73415	0.83069	24.198	2	1	Median	1.2168	1.153	NaN	1	0	Median	1.0545	1.0773	NaN	1	0	Median	283250000	136890000	146350000	65837000	25526000	40311000	86946000	47351000	39595000	62690000	26373000	36316000	67773000	37641000	30132000	41641	1809	39201	254612;254613;254614;254615;254616	341565;341566;341567;341568;341569;341570;341571;341572;341573;341574	341573			10	
QLLMVGGLDR	0	Unmodified	1100.6012	0.60121417	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.777	62.256	2	0.00052385	54171	160511_QHF_FH_JSI11i_2	87.476	74.439			1.7044	1.681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7044	1.681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64214000	26084000	38130000	0	0	0	0	0	0	64214000	26084000	38130000	0	0	0	41642	3119	39202	254617	341575	341575			1	
QLLNLVVIGHVDAGK	1	Unmodified	1574.9144	0.91442646	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.797	77.531	3	3.323E-05	67403	160511_QHF_FH_JSI12i_3	95.822	93.523			1.4267	1.4719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4267	1.4719	NaN	1	0	Median	23927000	11198000	12729000	0	0	0	0	0	0	0	0	0	23927000	11198000	12729000	41643	5610	39203	254618;254619	341576;341577;341578	341578			3	
QLLPCEMACNEK	1	Unmodified	1491.652	0.65200546	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	45.635	45.11	2	0.0001146	40491	160511_QHF_FH_JSI10i_1	83.862	74.504			1.4412	1.4331	85.143	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8232	0.78491	NaN	1	1	Median	2.5231	2.6167	NaN	1	0	Median	91420000	38578000	52842000	0	0	0	0	0	0	38433000	21446000	16986000	52988000	17132000	35856000	41644	4943	39204	254620;254621;254622;254623;254624	341579;341580;341581;341582;341583	341582			5	
QLLPLLEK	1	Unmodified	952.59572	0.59571809	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	71.776	70.823	2	0.0226	61925	160511_QHF_FH_JSI11i_2	43.808	38.953			1.1531	1.1661	8.1971	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1692	1.1004	NaN	1	0	Median	1.1372	1.2357	NaN	1	0	Median	24618000	10843000	13775000	0	0	0	0	0	0	16446000	7267600	9178700	8171300	3575200	4596100	41645	4580	39205	254625;254626	341584	341584			1	
QLLPMLLQGTSIFTAPK	1	Unmodified	1857.0434	0.043391725	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	101.96	101.88	3	2.7395E-11	88688	160511_QHF_FH_JSI12i_3	144.29	133.82			1.0832	1.0786	13.874	4	0	Median	1.1477	0.95641	NaN	1	0	Median	0.92996	1.1135	NaN	1	0	Median	1.4543	1.3278	NaN	1	0	Median	1.0223	1.0449	NaN	1	0	Median	451640000	226950000	224680000	33403000	15955000	17447000	91462000	48918000	42544000	70792000	34393000	36399000	255980000	127690000	128290000	41646	4856	39206	254627;254628;254629;254630	341585;341586;341587;341588	341587			3	
QLLQAALR	0	Unmodified	911.55525	0.55525025	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.674	40.215	2	0.016117	34500	160511_QHF_FH_JSI11i_2	48.346	27.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41647	3094	39207	254631	341589	341589			1	
QLLQANPILEAFGNAK	1	Unmodified	1725.9414	0.94136949	1436;1445;3263	P35579;Q7Z406;P35749	MYH9;MYH14;MYH11	Myosin-9;Myosin-14;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.37	0.666	2	8	9							4	6	5	4	98.809	98.679	2;3	7.8895E-235	85344	160511_QHF_FH_JSI12i_3	348.72	338.35			1.02	0.98504	21.302	18	1	Median	1.0562	0.90717	29.387	4	0	Median	0.85978	0.99463	27.426	5	1	Median	0.99983	0.98775	5.8661	5	0	Median	0.9386	0.99418	8.1854	4	0	Median	3369600000	1653100000	1716500000	356850000	169280000	187580000	488670000	281750000	206920000	1177300000	622810000	554470000	1346800000	579240000	767530000	41648	1436;3263;1445	39208	254632;254633;254634;254635;254636;254637;254638;254639;254640;254641;254642;254643;254644;254645;254646;254647;254648;254649;254650	341590;341591;341592;341593;341594;341595;341596;341597;341598;341599;341600;341601;341602;341603;341604;341605;341606;341607;341608;341609;341610;341611;341612;341613;341614;341615;341616;341617;341618;341619;341620;341621;341622;341623;341624;341625;341626;341627;341628;341629;341630;341631;341632;341633;341634;341635;341636;341637;341638;341639;341640	341637			50	
QLLQDPQEPSAR	0	Unmodified	1380.6997	0.69974224	3058	Q6IN84	MRM1	rRNA methyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.001	32.746	2	8.6181E-06	29383	160511_QHF_FH_JSI12i_1	97.456	68.729			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7446300	7446300	0	7446300	7446300	0	0	0	0	0	0	0	0	0	0	41649	3058	39209	254651;254652;254653;254654	341641;341642;341643;341644	341642			4	
QLLQEAEVWK	1	Unmodified	1242.6608	0.66083754	4195	Q96PC5;Q8IX95;Q96RT6	MIA2;CTAGE3P;CTAGE1	Melanoma inhibitory activity protein 2;Putative cTAGE family member 3;cTAGE family member 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		3						1		1	1	1	1	64.605	61.122	2	0.00012726	32774	160513_QHF_FH_JSI11Kac_5	96.342	28.848			0.56655	0.52534	95.023	4	4	Median	0.55627	0.48792	NaN	1	1	Median	0.81107	0.98781	NaN	1	1	Median	0.57701	0.56562	NaN	1	1	Median	0.094213	0.1071	NaN	1	1	Median	61351000	41561000	19790000	18252000	13645000	4607400	22899000	13469000	9429700	9818600	5350800	4467800	10381000	9095600	1285400	41650	4195	39210	254655;254656;254657;254658	341645;341646;341647;341648	341647			4	
QLLQEQESVK	1	Unmodified	1200.635	0.63501672	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	27.493	26.821	2	1.082E-07	23633	160511_QHF_FH_JSI11i_1	138.98	73.723			1.0235	0.94726	21.903	5	1	Median	0.95885	0.80571	14.273	2	1	Median	0.80421	0.94726	NaN	1	0	Median	1.297	1.2742	NaN	1	0	Median	1.1028	1.147	NaN	1	0	Median	782140000	395040000	387100000	255510000	136750000	118760000	193170000	109810000	83357000	183520000	78418000	105100000	149940000	70055000	79881000	41651	1085	39211	254659;254660;254661;254662;254663;254664	341649;341650;341651;341652;341653;341654;341655;341656;341657	341649			9	
QLLQLLTTYIVR	0	Unmodified	1459.8763	0.87625004	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	94.402	86.181	2;3	1.072E-39	50496	160513_QHF_FH_JSI10Kac_6	198.25	139.27			1.057	1.0126	28.621	7	3	Median	1.3063	1.0953	3.8327	2	1	Median	0.65464	0.78296	15.097	2	0	Median	0.77102	0.74091	44.185	2	2	Median	1.134	1.1951	NaN	1	0	Median	659360000	352710000	306650000	149870000	67953000	81915000	247580000	139590000	107990000	156360000	97186000	59171000	105550000	47985000	57569000	41652	2947	39212	254665;254666;254667;254668;254669;254670;254671	341658;341659;341660;341661;341662;341663;341664;341665;341666;341667	341666			10	
QLLQLYLQALEK	1	Unmodified	1458.8446	0.84461556	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	3	0			3							1		1	1	100.53	100.47	2	1.406E-05	81527	160511_QHF_FH_JSI9i_3	127.51	73.832			1.0316	1.0798	44.154	3	1	Plateau	0.59746	0.49313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1079	1.038	NaN	1	0	Median	1.0316	1.0798	NaN	1	0	Median	112530000	62381000	50151000	32632000	20652000	11981000	0	0	0	21897000	11768000	10129000	58003000	29961000	28042000	41653	117	39213	254672;254673;254674	341668;341669	341669			1	
QLLQNPPAGVDPIIWEQAK	1	Unmodified	2116.1317	0.13168946	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	89.466	89.001	3	0.017646	80898	160511_QHF_FH_JSI11i_1	32.121	23.074			1.3496	1.3374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3496	1.3374	NaN	1	1	Median	14786000	7142800	7642800	0	0	0	0	0	0	0	0	0	14786000	7142800	7642800	41654	3258	39214	254675;254676	341670;341671	341670			2	
QLLQSAHK	1	Unmodified	923.51886	0.51886475	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	9.1808	9.1199	2;3	0.0007704	6445	160511_QHF_FH_JSI12i_3	98.458	72.074			1.0029	0.98521	15.503	5	1	Median	NaN	NaN	NaN	0	0	Median	0.59251	0.71932	NaN	1	1	Median	1.0984	1.0272	5.9046	2	0	Median	0.97477	0.98811	1.8764	2	0	Median	2019600000	1058200000	961430000	0	0	0	65516000	37612000	27904000	568250000	271170000	297080000	1385800000	749400000	636450000	41655	3042	39215	254677;254678;254679;254680;254681	341672;341673;341674;341675;341676;341677;341678	341677			7	
QLLSASYEFQR	0	Unmodified	1340.6725	0.67246486	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	55.249	54.304	2	0.00033949	46564	160511_QHF_FH_JSI12i_2	88.496	74.289			0.93709	1.0142	20.663	5	3	Median	1.4641	1.2121	NaN	1	1	Median	0.89772	1.0988	23.155	2	2	Median	0.78587	0.77341	NaN	1	0	Median	0.93709	1.0142	NaN	1	0	Median	221920000	107050000	114870000	25603000	10289000	15313000	89821000	43323000	46498000	50061000	23684000	26377000	56440000	29754000	26686000	41656	3797	39216	254682;254683;254684;254685;254686	341679;341680;341681;341682;341683;341684;341685	341680			7	
QLLSELDEEK	1	Unmodified	1202.603	0.60304789	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.168	46.488	2	1.4098E-06	41961	160511_QHF_FH_JSI11i_1	129.85	84.171			1.8206	1.5967	25.865	4	4	Median	1.8721	1.4963	NaN	1	1	Median	1.0979	1.2783	NaN	1	1	Median	1.7705	1.7037	NaN	1	1	Median	2.2423	2.3506	NaN	1	1	Median	131050000	50449000	80605000	24993000	8535600	16457000	27708000	14456000	13252000	47971000	15719000	32251000	30383000	11738000	18644000	41657	3982	39217	254687;254688;254689;254690	341686;341687;341688;341689	341686			4	
QLLSLAANGIQR	0	Unmodified	1282.7357	0.73573382	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				59.617	58.631	2	0.0025383	51541	160511_QHF_FH_JSI9i_2	70.1	40.291			2.1691	1.8796	NaN	1	1	Median	2.1691	1.8796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14368000	2086000	12282000	14368000	2086000	12282000	0	0	0	0	0	0	0	0	0	41658	4477	39218	254691	341690	341690			1	
QLLSLKAEYK	2	Acetyl (K)	1233.6969	0.69688869	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15.3	0.471								2	1		1		2	70.984	60.658	2	0.001407	30185	160513_QHF_FH_JSI12Kac_5	85.377	38.486			0.73653	0.84221	29.1	2	0	Median	NaN	NaN	NaN	0	0	Median	0.57423	0.68557	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9447	1.0346	NaN	1	0	Median	25148000	14351000	10797000	0	0	0	3743900	2419500	1324400	0	0	0	21404000	11931000	9472900	41659	878	39219	254692;254693;254694	341691;341692;341693	341691	593		3	
QLLSNELLLTQMEK	1	Unmodified	1658.8913	0.89130776	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	85.346	84.646	2;3	3.4784E-22	75213	160511_QHF_FH_JSI10i_2	182.07	143.77			1.0438	0.99786	13.347	8	1	Median	1.1824	1.0007	2.9019	2	0	Median	0.74218	0.903	8.3518	2	0	Median	1.0438	1.0595	5.9691	2	0	Median	0.92355	1.0079	29.383	2	1	Median	356130000	184470000	171670000	61064000	28830000	32234000	71831000	43991000	27839000	144410000	71534000	72879000	78825000	40111000	38714000	41660	4831	39220	254695;254696;254697;254698;254699;254700;254701;254702	341694;341695;341696;341697;341698;341699;341700;341701;341702;341703	341703			8	
QLLSYALIHPATTLEDR	0	Unmodified	1940.0367	0.036726442	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.957	77.691	3	0.000279	67465	160511_QHF_FH_JSI12i_3	75.143	57.443			0.70566	0.73098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70566	0.73098	NaN	1	0	Median	49602000	29610000	19993000	0	0	0	0	0	0	0	0	0	49602000	29610000	19993000	41661	2913	39221	254703;254704	341704;341705	341705			1	
QLLSYITK	1	Unmodified	964.55933	0.55933258	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.042	52.664	2	0.0028185	45145	160511_QHF_FH_JSI12i_2	84.498	47.797			0.69757	0.75474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69757	0.75474	NaN	1	1	Median	81126000	43167000	37959000	0	0	0	0	0	0	0	0	0	81126000	43167000	37959000	41662	2605	39222	254705	341706	341706			1	
QLLTDFCTHLPNLPDSTAK	1	Unmodified	2170.0729	0.072853952	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	83.139	82.349	3	0.00010273	73199	160511_QHF_FH_JSI10i_2	74.364	57.286			1.4301	1.5126	44.274	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.60383	0.74724	NaN	1	1	Median	0.87791	0.90693	NaN	1	1	Median	1.5737	1.7398	NaN	1	1	Median	95089000	41464000	53625000	0	0	0	29419000	16375000	13044000	34975000	16681000	18294000	30695000	8408700	22286000	41663	4411	39223	254706;254707;254708	341707;341708;341709	341709			3	
QLLTLSSELSQAR	0	Unmodified	1444.7886	0.78855725	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.66	2	5	2					3		2	4	3	3	69.28	65.542	2	1.1883E-22	57480	160511_QHF_FH_JSI11i_2	180.97	83.537			0.81492	0.94615	12.59	9	1	Linear	1.0034	0.85139	11.541	2	0	Median	0.67666	0.84121	14.511	3	0	Plateau	0.81492	0.82836	3.1164	3	1	Plateau	0.91116	1.0129	NaN	1	0	Median	1064100000	626470000	437650000	218140000	113800000	104340000	238330000	140000000	98337000	360320000	218760000	141550000	247320000	153910000	93416000	41664	1073	39224	254709;254710;254711;254712;254713;254714;254715;254716;254717;254718;254719;254720	341710;341711;341712;341713;341714;341715;341716;341717;341718;341719;341720;341721;341722;341723;341724;341725;341726	341720			17	
QLLTLSSELSQARDENK	1	Unmodified	1930.996	0.99598384	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.7		5	5						3	4	5	2	2	61.722	58.699	2;3	7.3878E-41	49159	160511_QHF_FH_JSI10i_3	205.68	198.27			0.93611	0.973	27.859	13	8	Median	0.94529	0.79218	30.272	4	3	Median	0.81772	0.9939	24.845	5	3	Median	1.3105	1.2492	37.376	2	1	Median	0.98892	1.0837	15.246	2	1	Median	2139500000	1156300000	983250000	610630000	291160000	319470000	1406500000	808520000	597980000	64432000	25903000	38529000	57981000	30707000	27274000	41665	1073	39225	254721;254722;254723;254724;254725;254726;254727;254728;254729;254730;254731;254732;254733	341727;341728;341729;341730;341731;341732;341733;341734;341735;341736;341737;341738;341739;341740;341741;341742;341743	341730			17	
QLLTYIR	0	Unmodified	905.53345	0.53345218	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	48.207	47.686	2	0.0036105	40834	160511_QHF_FH_JSI11i_2	90.777	30.483			1.7208	1.7427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7208	1.7427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	309960000	93384000	216580000	0	0	0	0	0	0	309960000	93384000	216580000	0	0	0	41666	1943	39226	254734;254735;254736	341744;341745;341746	341746			3	
QLLVAWQDQEGVHATPENLINALNK	1	Unmodified	2800.4508	0.45079177	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	99.564	99.577	3	3.5439E-06	86085	160511_QHF_FH_JSI12i_3	61.703	54.751			0.99408	0.96183	31.259	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7693	1.6697	NaN	1	1	Median	1.1562	1.1335	30.888	2	2	Median	77468000	33939000	43529000	0	0	0	0	0	0	19433000	5026700	14406000	58035000	28912000	29123000	41667	4076	39227	254737;254738;254739;254740	341747;341748;341749;341750;341751	341749			5	
QLLVFPGHK	1	Unmodified	1037.6022	0.60220045	5613	Q9Y484	WDR45	WD repeat domain phosphoinositide-interacting protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.634	46.393	2	0.0017027	39572	160511_QHF_FH_JSI12i_3	79.469	59.832			0.68832	0.7395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68832	0.7395	NaN	1	0	Median	19828000	10806000	9021700	0	0	0	0	0	0	0	0	0	19828000	10806000	9021700	41668	5613	39228	254741	341752;341753	341752			2	
QLLYDAIK	1	Unmodified	962.54368	0.54368251	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.6	0.49	2	3									2	1	2	52.674	51.891	2	0.00096024	44689	160511_QHF_FH_JSI11i_2	95.909	22.293			0.96598	1.0221	20.074	5	2	Median	NaN	NaN	NaN	0	0	Median	0.81746	0.9924	26.713	2	0	Median	1.2698	1.2908	NaN	1	0	Median	0.8812	0.93257	12.965	2	2	Median	301810000	148100000	153710000	0	0	0	112340000	58512000	53826000	125230000	53764000	71462000	64244000	35820000	28424000	41669	5135	39229	254742;254743;254744;254745;254746	341754;341755;341756	341756			3	
QLLYLEK	1	Unmodified	905.52222	0.52221879	3931;2334	Q12974;Q93096	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	no	no	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	49.816	48.833	2	0.039255	41772	160511_QHF_FH_JSI12i_2	47.749	17.524			0.98011	1.088	6.1442	4	0	Median	1.3263	1.1201	NaN	1	0	Median	0.86941	1.0777	NaN	1	0	Median	0.98211	0.97552	NaN	1	0	Median	0.97811	1.0983	NaN	1	0	Median	404870000	185170000	219700000	75902000	32113000	43789000	80614000	40950000	39664000	154150000	72766000	81381000	94210000	39341000	54869000	41670	2334;3931	39230	254747;254748;254749;254750	341757	341757			1	
QLMETPANEMTPTR	0	Unmodified	1617.7491	0.74907697	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	2	3	3	46.597	45.864	2	2.3135E-30	41477	160511_QHF_FH_JSI11i_1	194.96	179.63			1.0202	1.0218	18.21	5	1	Median	1.153	0.94078	NaN	1	0	Median	0.7255	0.86112	30.196	2	1	Median	1.0428	1.0218	NaN	1	0	Median	1.0202	1.0813	NaN	1	0	Median	482470000	242110000	240360000	101600000	44901000	56694000	153990000	81813000	72182000	121730000	67412000	54323000	105150000	47987000	57158000	41671	1313	39231	254751;254752;254753;254754;254755;254756;254757;254758;254759	341758;341759;341760;341761;341762;341763;341764;341765;341766;341767;341768;341769;341770	341759			13	
QLMFHFTSK	1	Unmodified	1137.5641	0.56410038	768	P00414	MT-CO3	Cytochrome c oxidase subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	60.019	50.443	3	0.001724	27477	160513_QHF_FH_JSI11Kac_6	50.194	42.269			1.4847	1.3559	38.964	3	1	Plateau	1.5582	1.3589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1845	1.1816	NaN	1	0	Median	0.60459	0.65237	NaN	1	1	Median	22313000	10623000	11690000	9437600	3264200	6173300	0	0	0	7808400	3987800	3820500	5066800	3370800	1695900	41672	768	39232	254760;254761;254762	341771;341772;341773	341771			3	
QLMFSQFAQGR	0	Unmodified	1311.6394	0.63939059	3596	Q8NBM4	UBAC2	Ubiquitin-associated domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			64.444	62.94	2	0.012045	51614	160511_QHF_FH_JSI9i_3	45.368	25.581			1.0091	0.96406	6.6044	2	1	Median	1.244	1.0102	NaN	1	0	Median	0.81848	0.92007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46550000	31155000	15394000	26521000	16594000	9926700	20029000	14561000	5467600	0	0	0	0	0	0	41673	3596	39233	254763;254764	341774;341775	341775			2	
QLMGQVLAK	1	Unmodified	986.55829	0.55828672	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	42.098	41.162	2	6.0582E-06	35313	160511_QHF_FH_JSI12i_2	113.5	96.723			0.96319	1.0551	0.66967	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85877	1.0413	NaN	1	0	Median	1.0297	1.0465	NaN	1	0	Median	0.96319	1.0552	NaN	1	0	Median	410110000	210770000	199340000	0	0	0	93217000	55668000	37549000	125170000	65300000	59873000	191720000	89805000	101910000	41674	4361	39234	254765;254766;254767	341776;341777;341778;341779	341776			4	
QLMHSGHPSEK	1	Unmodified	1249.5874	0.58735502	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.7388	5.7388	2	0.00020729	3491	160511_QHF_FH_JSI11i_3	86.624	53.362			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41675	2162	39235	254768	341780	341780			1	
QLMHSLFGDYR	0	Unmodified	1365.65	0.64995528	4768	Q9H7E9	C8orf33	UPF0488 protein C8orf33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	57.327	56.495	2;3	4.6117E-05	48287	160511_QHF_FH_JSI12i_3	69.451	65.147			0.85963	0.88766	12.62	4	0	Median	1.2982	1.0523	NaN	1	0	Median	0.8065	0.91775	NaN	1	0	Median	0.91625	0.85856	NaN	1	0	Median	0.77882	0.77913	NaN	1	0	Median	169110000	92812000	76297000	18448000	7263300	11185000	23485000	13406000	10079000	73983000	41217000	32767000	53192000	30926000	22266000	41676	4768	39236	254769;254770;254771;254772;254773;254774;254775	341781;341782;341783;341784;341785;341786;341787;341788	341787			8	
QLMLYYHR	0	Unmodified	1122.5644	0.56443473	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	3	3	3	3	46.807	40.323	2;3	6.9738E-24	22172	160513_QHF_FH_JSI10Kac_6	193.98	178.6			1.0388	1.1006	32.056	12	0	Median	1.2687	1.0938	6.6281	3	0	Median	0.95362	1.1348	2.5115	3	0	Median	1.0314	0.982	47.249	3	0	Median	1.0448	1.1279	45.213	3	0	Median	608640000	298530000	310110000	113430000	52980000	60451000	279120000	138900000	140220000	120890000	62055000	58838000	95199000	44599000	50601000	41677	1888	39237	254776;254777;254778;254779;254780;254781;254782;254783;254784;254785;254786;254787	341789;341790;341791;341792;341793;341794;341795;341796;341797;341798;341799;341800;341801;341802;341803;341804;341805;341806	341806			16	
QLMLYYHR	0	Oxidation (M)	1138.5593	0.55934935	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	43.393	34.174	2;3	0.00081441	18904	160513_QHF_FH_JSI10Kac_6	82.241	74.595			0.96736	1.0455	9.984	8	1	Median	1.1154	0.96013	20.109	2	1	Median	0.78781	0.94138	7.2652	2	0	Median	1.0952	1.071	0.15202	2	0	Median	0.96089	1.0455	1.2547	2	0	Median	131840000	68338000	63505000	28454000	11552000	16902000	52783000	30624000	22159000	20390000	11028000	9362100	30215000	15134000	15081000	41678	1888	39237	254788;254789;254790;254791;254792;254793;254794;254795	341807;341808;341809;341810;341811;341812;341813;341814;341815;341816;341817;341818;341819	341816		1561	13	
QLMNLPQSAATPALSNPHLTAVLQNK	1	Unmodified	2756.4643	0.46433334	3305	Q86TB9	PATL1	Protein PAT1 homolog 1	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			86.632	85.771	3	0.00067691	76203	160511_QHF_FH_JSI10i_2	40.937	33.661			1.2109	1.4673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2109	1.4673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8260100	4698100	3562000	0	0	0	8260100	4698100	3562000	0	0	0	0	0	0	41679	3305	39238	254796;254797	341820;341821;341822	341822			3	
QLMSQVAVAGLLTVLVSFLDVR	0	Unmodified	2358.3345	0.33448837	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0		By MS/MS			11	0				1							1			106.19	97.082	3	5.1113E-08	36903	160513_QHF_FH_JSI10Kac_1	83.905	69.744			0.71455	0.8238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71455	0.8238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6135100	3080300	3054800	0	0	0	6135100	3080300	3054800	0	0	0	0	0	0	41680	2370	39239	254798	341823;341824;341825	341824			3	
QLMTNLSHK	1	Unmodified	1070.5543	0.55426398	2882	Q5EBL4	RILPL1	RILP-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	18.863	18.889	3	0.047626	15297	160511_QHF_FH_JSI12i_3	25.979	17.116			1.5032	1.5608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5032	1.5608	NaN	1	1	Median	38680000	10502000	28178000	0	0	0	0	0	0	0	0	0	38680000	10502000	28178000	41681	2882	39240	254799	341826	341826			1	
QLMVHAFIK	1	Unmodified	1085.6056	0.60557126	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.39	6.62		2	7						9	5	4	5	4	55.263	50.19	2;3	1.5455E-07	27481	160513_QHF_FH_JSI10Kac_6	143.12	96.039			1.2436	1.289	82.74	18	6	Median	1.74	1.4502	94.305	5	1	Median	1.1651	1.3559	122.36	4	2	Median	1.0231	0.96341	62.382	5	2	Median	1.2344	1.289	16.15	4	1	Median	1654400000	660040000	994320000	340110000	113490000	226610000	516950000	171850000	345090000	486580000	205250000	281330000	310730000	169450000	141290000	41682	2191	39241	254800;254801;254802;254803;254804;254805;254806;254807;254808;254809;254810;254811;254812;254813;254814;254815;254816;254817	341827;341828;341829;341830;341831;341832;341833;341834;341835;341836;341837;341838;341839;341840;341841;341842;341843;341844;341845;341846;341847	341845			21	
QLMVHAFIK	1	Oxidation (M)	1101.6005	0.60048589	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	14.1	4.55			1						6	2		2	3	50.571	42.821	2;3	0.00052718	22849	160513_QHF_FH_JSI9Kac_6	76.221	76.221			0.98856	0.93082	37.376	5	2	Median	0.98856	0.83631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1205	1.0816	NaN	1	0	Median	0.90393	0.93082	49.672	3	2	Median	107890000	46150000	61742000	32432000	13670000	18761000	0	0	0	22415000	11172000	11244000	53045000	21308000	31737000	41683	2191	39241	254818;254819;254820;254821;254822;254823;254824	341848;341849;341850;341851;341852;341853;341854;341855;341856	341852		1830	9	
QLNALNK	1	Unmodified	799.4552	0.45520186	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	2	3	16.59	15.818	2	0.0084581	12784	160511_QHF_FH_JSI11i_2	72.355	15.464			1.1897	1.2597	82.726	7	5	Median	1.4682	1.2597	NaN	1	0	Median	0.76713	0.94213	60.501	2	2	Median	1.803	1.7533	NaN	1	1	Median	0.81847	0.89577	129.39	3	2	Median	715110000	350930000	364180000	136790000	58618000	78167000	192230000	104570000	87655000	148070000	62075000	85993000	238030000	125660000	112360000	41684	1054	39242	254825;254826;254827;254828;254829;254830;254831;254832	341857;341858;341859;341860;341861;341862;341863	341861			7	
QLNDLWDQIEQAHLELR	0	Unmodified	2120.0651	0.065066458	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.729	98.748	3	3.7048E-08	85598	160511_QHF_FH_JSI12i_3	124.29	107.67			2.077	2.1858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.077	2.1858	NaN	1	1	Median	18249000	6365000	11884000	0	0	0	0	0	0	0	0	0	18249000	6365000	11884000	41685	4271	39243	254833	341864	341864			1	
QLNDQLISR	0	Unmodified	1085.5829	0.58292157	5524	Q9Y2L5	TRAPPC8	Trafficking protein particle complex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.5	6.5	1						1				1	1		39.389	34.108	2	0.0015973	20291	160513_QHF_FH_JSI11Kac_4	87.308	3.095			0.94149	1.0125	23.216	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72394	0.85917	NaN	1	0	Median	1.2244	1.1931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	272150000	159960000	112190000	0	0	0	260940000	154230000	106710000	11215000	5732800	5481900	0	0	0	41686	5524	39244	254834;254835	341865;341866	341866			2	
QLNDVKTTVVYPATEK	2	Acetyl (K)	1846.9676	0.96764382	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	69.305	59.976	2	0.0019194	30729	160513_QHF_FH_JSI12Kac_3	89.629	68.08			1.5161	1.6742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5161	1.6742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1916900	482200	1434700	0	0	0	1154200	482200	672040	0	0	0	762690	0	762690	41687	4003	39245	254836;254837	341867;341868	341867	3027;3028		2	
QLNEAHK	1	Unmodified	838.42972	0.42971539	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.11	1	12						3		2	4	6	4	4.6883	2.6267	2;3	0.00069592	2077	160511_QHF_FH_JSI12i_2	130.04	79.073			0.97272	1.1488	63.176	12	2	Median	1.473	1.2636	NaN	1	0	Median	0.79725	0.98361	16.233	3	0	Plateau	1.3057	1.3602	101.13	5	2	Median	0.92101	1.0297	28.681	3	0	Median	5914300000	2241400000	3672900000	754430000	210480000	543940000	1360600000	582780000	777830000	2136300000	929370000	1206900000	1663000000	518750000	1144200000	41688	686	39246	254838;254839;254840;254841;254842;254843;254844;254845;254846;254847;254848;254849;254850;254851;254852;254853	341869;341870;341871;341872;341873;341874;341875;341876;341877;341878;341879;341880;341881;341882	341870			14	
QLNENQVR	0	Unmodified	999.50976	0.50975662	2014	P62714	PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	10.901	10.211	2	0.016706	7763	160511_QHF_FH_JSI12i_2	47.657	12.362			0.75105	0.80999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75105	0.80999	NaN	1	1	Median	44427000	27071000	17356000	0	0	0	0	0	0	0	0	0	44427000	27071000	17356000	41689	2014	39247	254854;254855	341883;341884	341884			2	
QLNESIIVALFQGQFK	1	Unmodified	1833.9989	0.99888437	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	97.213	87.771	3	2.8469E-05	48025	160513_QHF_FH_JSI12Kac_6	91.457	74.928			0.56509	0.59621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56509	0.59621	NaN	1	0	Median	77037000	52048000	24989000	0	0	0	0	0	0	0	0	0	77037000	52048000	24989000	41690	1501	39248	254856	341885	341885			1	
QLNHFWEIVVQDGITLITK	1	Unmodified	2253.2158	0.21575344	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	98.694	90.336	3	2.2738E-13	54235	160513_QHF_FH_JSI10Kac_6	127.5	102.29			0.81369	0.7946	17.389	4	2	Median	0.91834	0.7794	17.977	2	2	Median	0.81871	0.98763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66672	0.71339	NaN	1	0	Median	546730000	317080000	229650000	195200000	102540000	92662000	286990000	177570000	109410000	0	0	0	64546000	36969000	27576000	41691	1024	39249	254857;254858;254859;254860	341886;341887;341888;341889;341890	341890			5	
QLNHPNVIK	1	Unmodified	1061.5982	0.5981777	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.721	17.76	3	0.02528	14396	160511_QHF_FH_JSI12i_3	49.423	41.498			1.2683	1.277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2683	1.277	NaN	1	0	Median	81267000	23734000	57533000	0	0	0	0	0	0	0	0	0	81267000	23734000	57533000	41692	3727	39250	254861	341891	341891			0	
QLNKYDPFSR	1	Acetyl (K)	1308.6463	0.64625011	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	69.173	58.433	2	3.1882E-12	31425	160513_QHF_FH_JSI11Kac_5	157.66	138.88			0.96281	0.98438	17.963	7	0	Median	0.9573	0.81316	NaN	1	0	Median	0.90407	1.0805	35.334	2	0	Median	0.95871	0.94063	6.4293	2	0	Median	0.96319	1.0422	1.2519	2	0	Median	151710000	78319000	73392000	17952000	8948900	9003300	42639000	22587000	20051000	54398000	26779000	27619000	36723000	20004000	16719000	41693	2213	39251	254862;254863;254864;254865;254866;254867;254868	341892;341893;341894;341895;341896;341897;341898;341899;341900;341901;341902	341898	2331		11	
QLNLENVVGDK	1	Unmodified	1227.6459	0.64591575	394	O43929;CON__Q2YDI2	ORC4	Origin recognition complex subunit 4	yes	no	0	0	0	0				By MS/MS	1	0	1												1	57.649	56.991	2	0.010563	51798	160511_QHF_FH_JSI12i_1	46.796	20.354			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41694	394	39252	254869	341903	341903			1	
QLNPINLTER	0	Unmodified	1196.6513	0.65133548	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								2	1			51.967	50.957	2	0.031061	44720	160511_QHF_FH_JSI9i_2	60.019	42.624			1.2931	1.5985	50.424	3	1	Median	1.5753	1.3454	69.909	2	1	Median	1.2931	1.5985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	261730000	90863000	170870000	161810000	46679000	115130000	99925000	44184000	55741000	0	0	0	0	0	0	41695	134	39253	254870;254871;254872	341904;341905;341906	341905			1	
QLNQFPDFNNYLIFVLTR	0	Unmodified	2241.1582	0.15823856	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	98.669	90.783	2	7.9843E-113	51259	160513_QHF_FH_JSI11Kac_6	258.36	226.83			0.97976	0.92269	20.334	5	2	Median	1.3873	1.1667	NaN	1	0	Median	0.63401	0.748	11.075	2	2	Median	0.97976	0.92269	NaN	1	0	Median	0.98019	1.0257	NaN	1	0	Median	801800000	429760000	372040000	128500000	55426000	73077000	413070000	249320000	163750000	150790000	72436000	78352000	109440000	52577000	56863000	41696	205	39254	254873;254874;254875;254876;254877	341907;341908;341909	341907			3	
QLNSESLSQWTNPSTMANAK	1	Unmodified	2206.0324	0.032445701	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								2	2	4	4	70.852	70.139	2;3	0	61814	160511_QHF_FH_JSI9i_2	387.73	377.66			0.90332	0.95097	27.542	12	4	Median	1.1502	0.95804	7.0619	2	0	Median	0.78334	0.92023	6.8008	2	0	Median	0.96204	0.94137	42.265	4	2	Median	0.90332	0.95615	28.025	4	2	Median	1781500000	899140000	882370000	133390000	62950000	70440000	170000000	97689000	72313000	946480000	468370000	478120000	531630000	270140000	261500000	41697	1464	39255	254878;254879;254880;254881;254882;254883;254884;254885;254886;254887;254888;254889	341910;341911;341912;341913;341914;341915;341916;341917;341918;341919;341920;341921;341922;341923;341924;341925;341926;341927;341928;341929;341930;341931;341932	341926			23	
QLNSESLSQWTNPSTMANAK	1	Oxidation (M)	2222.0274	0.027360323	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.948	59.457	2	7.1409E-24	53903	160511_QHF_FH_JSI11i_1	140.82	127.69			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41698	1464	39255	254890;254891;254892	341933;341934;341935	341933		1134	3	
QLNYTIGEVPISFVDR	0	Unmodified	1849.9574	0.95741349	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	95.151	94.816	2;3	3.904E-10	83218	160511_QHF_FH_JSI9i_2	150.21	91.845			0.87741	0.93518	9.153	9	3	Median	1.1366	0.95269	13.609	3	2	Median	0.81673	1.0074	10.521	2	1	Median	0.89797	0.90555	5.1857	2	0	Median	0.85436	0.91955	0.61514	2	0	Median	310190000	159410000	150790000	83562000	38803000	44759000	43580000	24794000	18786000	97790000	49914000	47876000	85261000	45895000	39366000	41699	445	39256	254893;254894;254895;254896;254897;254898;254899;254900;254901	341936;341937;341938;341939;341940;341941;341942;341943;341944;341945;341946;341947	341941			12	
QLPAHDQDPSK	1	Unmodified	1234.5942	0.59421454	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.32	4	8					1			2	3	4	4	11.11	10.017	2;3	1.1989E-07	7962	160511_QHF_FH_JSI9i_2	101.39	88.512			1.0301	1.0464	10.84	11	2	Median	1.0798	0.925	6.6348	2	1	Median	0.94589	1.1598	4.8357	2	0	Median	1.0725	1.0821	9.2153	3	1	Median	0.94789	1.0398	10.931	4	0	Median	894700000	431940000	462760000	128840000	58738000	70098000	107820000	58410000	49413000	324270000	146880000	177390000	333770000	167910000	165860000	41700	5280	39257	254902;254903;254904;254905;254906;254907;254908;254909;254910;254911;254912;254913;254914	341948;341949;341950;341951;341952;341953;341954;341955;341956;341957;341958;341959;341960;341961	341956			14	
QLPAMTALQTLHLR	0	Unmodified	1591.8868	0.8868315	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			84.85	83.826	3	7.5239E-07	70068	160511_QHF_FH_JSI10i_3	115.06	102.19			1.087	0.87849	32.356	3	2	Plateau	1.087	0.87849	NaN	1	0	Median	0.55897	0.67652	40.483	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46480000	25877000	20603000	18300000	8053700	10247000	28179000	17823000	10356000	0	0	0	0	0	0	41701	2344	39258	254915;254916;254917	341962;341963;341964	341962			3	
QLPAQPPEHAVDGEGFK	1	Unmodified	1818.8901	0.89006221	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.411	45.907	3	0.0075733	39415	160511_QHF_FH_JSI11i_2	45.384	40.503			0.24087	0.24592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24087	0.24592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	288840000	251910000	36935000	0	0	0	0	0	0	288840000	251910000	36935000	0	0	0	41702	2501	39259	254918	341965	341965			1	
QLPASNFNSLHFLIVHLK	1	Unmodified	2077.1473	0.14727994	2845	Q52LW3	ARHGAP29	Rho GTPase-activating protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		86.131	77.9	3;4	4.8942E-45	44312	160513_QHF_FH_JSI10Kac_6	188.04	159.83			0.94385	0.89971	16.091	4	1	Median	0.87782	0.76251	NaN	1	0	Median	0.71029	0.84187	NaN	1	0	Median	1.0793	1.0303	9.7661	2	1	Median	NaN	NaN	NaN	0	0	Median	744010000	373250000	370760000	251350000	140460000	110890000	136560000	67539000	69023000	356100000	165250000	190850000	0	0	0	41703	2845	39260	254919;254920;254921;254922	341966;341967;341968;341969;341970;341971;341972	341971			7	
QLPELIR	0	Unmodified	867.5178	0.51780212	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.705	20.748	3	0.045334	17694	160511_QHF_FH_JSI9i_2	25.45	7.6021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8437700	0	8437700	8437700	0	8437700	0	0	0	0	0	0	0	0	0	41704	1167	39261	254923	341973	341973			1	
QLPHFTSEHIK	1	Unmodified	1335.6935	0.69353465	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							1	4	2	2	35.257	34.484	3;4	8.9749E-06	28873	160511_QHF_FH_JSI12i_3	85.288	76.775			1.0159	1.0602	28.8	9	2	Median	1.878	1.5614	NaN	1	0	Median	0.97882	1.1473	41.087	4	2	Median	1.1185	1.0518	1.126	2	0	Median	0.96836	0.98426	4.1015	2	0	Median	1041900000	496900000	544960000	33305000	14776000	18529000	147240000	75665000	71574000	357700000	149730000	207970000	503610000	256720000	246890000	41705	552	39262	254924;254925;254926;254927;254928;254929;254930;254931;254932	341974;341975;341976;341977;341978;341979;341980;341981;341982;341983;341984;341985	341982			10	
QLPIMVVGEHK	1	Unmodified	1249.6853	0.68527815	634	O94967	WDR47	WD repeat-containing protein 47	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		74.996	65.66	3	0.057365	35724	160513_QHF_FH_JSI11Kac_6	24.853	1.5339			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41706	634	39263	254933	341986	341986			1	
QLPITYPSAEEDLASHEDSVPSAMTTR	0	Unmodified	2944.376	0.37603142	3632	Q8NDX5	PHC3	Polyhomeotic-like protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	77.727	77.043	3	0.012253	66375	160511_QHF_FH_JSI12i_2	30.542	23.43			0.72799	0.81737	64.56	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1219	1.2903	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47237	0.5178	NaN	1	1	Median	87458000	59059000	28399000	0	0	0	26839000	20228000	6610200	0	0	0	60619000	38831000	21789000	41707	3632	39264	254934;254935	341987;341988	341987			2	
QLPLVKPYLR	1	Acetyl (K)	1267.7652	0.76524303	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		80.888	70.804	2	0.0044893	37482	160513_QHF_FH_JSI11Kac_5	71.223	71.223			0.29305	0.28698	77.575	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89764	1.0437	NaN	1	0	Median	0.27773	0.27305	7.0383	2	0	Median	NaN	NaN	NaN	0	0	Median	49288000	37896000	11392000	0	0	0	1854600	1096900	757720	47433000	36799000	10634000	0	0	0	41708	2155	39265	254936;254937;254938	341989;341990	341990	2262		2	
QLPPNGDPNFK	1	Unmodified	1225.6091	0.60913632	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	35.848	35.594	2	0.021498	32603	160511_QHF_FH_JSI12i_1	43.282	12.208			5.3837	5.2313	234.91	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.3837	5.2313	234.91	2	1	Median	NaN	NaN	NaN	0	0	Median	691350000	47274000	644080000	0	0	0	0	0	0	691350000	47274000	644080000	0	0	0	41709	3911	39266	254939;254940;254941	341991;341992;341993	341993			2	
QLPQEIIFLVWSPK	1	Unmodified	1696.9552	0.95522864	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.177	87.771	2	6.567E-10	50043	160513_QHF_FH_JSI11Kac_6	122.46	83.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41710	5353	39267	254942	341994	341994			1	
QLPQVLHMSELLNR	0	Unmodified	1676.9032	0.90320985	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				81.861	80.548	3	0.0022411	66269	160511_QHF_FH_JSI9i_3	41.743	32.699			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41711	2677	39268	254943	341995	341995			1	
QLPSAGPDK	1	Unmodified	911.47125	0.47124585	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.167	17.674	2	0.0013128	14880	160511_QHF_FH_JSI9i_1	69.598	55.95			1.0465	1.0141	6.1752	4	0	Median	1.2766	1.0334	NaN	1	0	Median	0.85649	0.99462	NaN	1	0	Median	1.1572	1.1339	NaN	1	0	Median	0.94642	0.9951	NaN	1	0	Median	701460000	351720000	349740000	175050000	77908000	97139000	162640000	91253000	71387000	205470000	105670000	99800000	158300000	76885000	81416000	41712	373	39269	254944;254945;254946;254947	341996;341997;341998;341999;342000	342000			5	
QLPSGGLNGRPEK	1	Unmodified	1351.7208	0.72081203	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			24.298	23.228	3	0.0011763	19155	160511_QHF_FH_JSI10i_3	57.106	20.521			0.77576	0.95094	50.415	3	1	Median	0.76848	0.63051	62.91	2	1	Median	0.77576	0.95094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119460000	74058000	45403000	92129000	59578000	32551000	27333000	14480000	12853000	0	0	0	0	0	0	41713	1803	39270	254948;254949;254950;254951	342001;342002;342003;342004	342001			4	
QLPTAAPDK	1	Unmodified	939.50255	0.50254598	1874	P56211	ARPP19	cAMP-regulated phosphoprotein 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.79	22.249	2	0.00075945	19617	160511_QHF_FH_JSI12i_1	79.474	38.528			1.449	1.2026	1.737	3	0	Plateau	1.449	1.2026	NaN	1	0	Median	1.0108	1.1685	NaN	1	0	Median	1.219	1.2056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	353490000	150930000	202560000	142010000	38563000	103440000	98861000	56665000	42195000	112630000	55702000	56925000	0	0	0	41714	1874	39271	254952;254953;254954;254955	342005;342006;342007;342008;342009;342010;342011	342007			7	
QLPTAAPDKTEVTGDHIPTPQDLPQR	1	Unmodified	2824.4355	0.43553563	1874	P56211	ARPP19	cAMP-regulated phosphoprotein 19	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		60.876	60.876	4	3.4557E-05	54072	160511_QHF_FH_JSI11i_3	45.972	39.173			1.0634	0.98861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	0.98861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68149000	41186000	26963000	0	0	0	0	0	0	68149000	41186000	26963000	0	0	0	41715	1874	39272	254956	342012;342013	342013			2	
QLQAETEPIVK	1	Unmodified	1254.682	0.68196691	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	4	2	2	40.826	36.561	2	3.5136E-48	32504	160511_QHF_FH_JSI11i_1	222.28	165.47			0.84064	0.81606	11.198	7	0	Median	0.98589	0.81606	NaN	1	0	Median	0.71944	0.84855	23.47	2	0	Median	0.87496	0.85319	11.355	2	0	Median	0.80744	0.85704	7.405	2	0	Median	2622400000	1334500000	1288000000	495330000	257030000	238300000	775440000	422000000	353440000	748570000	345390000	403180000	603090000	310050000	293040000	41716	1909	39273	254957;254958;254959;254960;254961;254962;254963;254964;254965	342014;342015;342016;342017;342018;342019;342020;342021;342022;342023;342024;342025;342026;342027;342028;342029;342030	342014			17	
QLQAIEFNK	1	Unmodified	1089.5819	0.58185893	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	46.658	45.789	2	8.3897E-05	40311	160511_QHF_FH_JSI10i_2	113.5	78.147			0.894	0.89993	49.431	5	5	Median	0.894	0.75476	NaN	1	1	Median	0.55801	0.67489	40.697	2	2	Median	1.6766	1.7231	NaN	1	1	Median	1.3156	1.4389	NaN	1	1	Median	283640000	137940000	145700000	53678000	23590000	30087000	92928000	51091000	41836000	76129000	32976000	43153000	60909000	30280000	30629000	41717	602	39274	254966;254967;254968;254969;254970	342031;342032;342033;342034;342035	342035			5	
QLQALSSELAQAR	0	Unmodified	1413.7576	0.75759147	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.64	1	7	1					3		3	2	5	2	57.569	54.283	2;3	4.4839E-07	46923	160511_QHF_FH_JSI11i_2	179.95	137.87			1.0046	1.0448	101.7	12	12	Median	2.6378	2.1778	132.16	3	3	Median	0.87255	1.0729	105.64	2	2	Median	0.58754	0.57369	90.194	5	5	Median	0.5334	0.56556	171.58	2	2	Median	899340000	461120000	438220000	140490000	65293000	75199000	188280000	101150000	87132000	438110000	227530000	210580000	132460000	67147000	65309000	41718	1426	39275	254971;254972;254973;254974;254975;254976;254977;254978;254979;254980;254981;254982	342036;342037;342038;342039;342040;342041;342042;342043;342044;342045;342046;342047;342048	342042			13	
QLQALSSELAQARDETK	1	Unmodified	1886.9698	0.96976909	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	5	2	1	55.384	54.585	2;3	2.1987E-08	48196	160511_QHF_FH_JSI11i_3	130.39	116.05			0.39546	0.45218	114.17	9	9	Median	0.893	0.754	117.99	2	2	Median	0.87135	1.0267	129.01	4	4	Median	0.96369	0.89545	160.57	2	2	Median	0.32614	0.32493	NaN	1	1	Median	1352500000	781040000	571500000	428380000	246990000	181380000	608680000	367780000	240890000	254360000	111490000	142870000	61133000	54776000	6357100	41719	1426	39276	254983;254984;254985;254986;254987;254988;254989;254990;254991;254992	342049;342050;342051;342052;342053;342054;342055;342056;342057;342058	342049			10	
QLQDELEMLVER	0	Unmodified	1501.7446	0.74464352	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	84.291	83.701	2	9.5569E-32	73786	160511_QHF_FH_JSI9i_2	194.17	177.14			0.99201	0.99936	7.3944	8	0	Median	1.2272	1.0278	8.7446	2	0	Median	0.8102	0.96472	6.1831	2	0	Median	1.0197	1.0128	3.0772	2	0	Median	0.91106	0.98317	14.476	2	0	Median	654520000	323660000	330860000	140560000	71146000	69417000	172700000	94814000	77889000	171070000	80591000	90477000	170180000	77108000	93076000	41720	2370	39277	254993;254994;254995;254996;254997;254998;254999;255000	342059;342060;342061;342062;342063;342064;342065;342066;342067;342068;342069;342070;342071;342072;342073;342074	342069			16	
QLQDEMLR	0	Unmodified	1031.507	0.50697943	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	34.46	31.363	2	1.0277E-08	26547	160511_QHF_FH_JSI12i_2	167.23	82.731			1.0772	1.0525	16.327	12	2	Median	1.2656	1.0332	10.289	3	0	Median	0.87666	1.048	1.7903	3	1	Median	1.1615	1.1423	9.8505	3	0	Median	1.0166	1.1274	34.16	3	1	Median	5558800000	2729200000	2829600000	1248600000	551560000	697070000	1492100000	800640000	691460000	1599500000	747930000	851530000	1218600000	629080000	589500000	41721	791	39278	255001;255002;255003;255004;255005;255006;255007;255008;255009;255010;255011;255012	342075;342076;342077;342078;342079;342080;342081;342082;342083;342084;342085;342086;342087;342088;342089;342090;342091;342092	342077			17	
QLQDEMLR	0	Oxidation (M)	1047.5019	0.50189405	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1				1	3	2	25.093	23.266	2	0.0011272	26523	160511_QHF_FH_JSI12i_2	102.51	70.559			1.6233	1.8705	32.553	5	0	Median	NaN	NaN	NaN	0	0	Median	1.6233	1.8842	NaN	1	0	Median	1.1562	1.1036	32.279	3	0	Median	1.9993	2.0486	NaN	1	0	Median	378320000	161740000	216570000	0	0	0	98074000	44033000	54040000	211200000	95008000	116190000	69044000	22703000	46341000	41722	791	39278	255013;255014;255015;255016;255017;255018	342093;342094;342095;342096	342094		305	4	
QLQDEMLRR	0	Unmodified	1187.6081	0.60809046	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	24.242	24.229	3	0.012438	20108	160511_QHF_FH_JSI12i_3	42.743	18.4			1.1048	1.0707	7.2304	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.0174	NaN	1	1	Median	1.1131	1.1269	NaN	1	1	Median	195050000	88023000	107020000	0	0	0	0	0	0	99205000	44569000	54635000	95842000	43453000	52389000	41723	791	39279	255019;255020	342097;342098	342098			2	
QLQDIATLADQR	0	Unmodified	1370.7154	0.7153923	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.695	55.543	2	0.00058632	49205	160511_QHF_FH_JSI9i_1	105.56	38.939			0.89244	0.7253	NaN	1	1	Median	0.89244	0.7253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225720000	150780000	74941000	225720000	150780000	74941000	0	0	0	0	0	0	0	0	0	41724	686	39280	255021	342099	342099			1	
QLQDIATLADQRR	0	Unmodified	1526.8165	0.81650333	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							3	5	1	1	48.204	47.261	2;3	2.9284E-16	41561	160511_QHF_FH_JSI10i_2	137.88	107.02			0.95702	0.98155	39.047	10	6	Median	1.2095	1.0019	42.663	3	2	Median	0.92119	1.1314	46.154	5	4	Median	0.99424	0.94612	NaN	1	0	Median	0.89734	0.89908	NaN	1	0	Median	1835200000	928350000	906820000	473370000	219200000	254170000	947140000	493680000	453460000	291220000	146660000	144550000	123440000	68797000	54643000	41725	686	39281	255022;255023;255024;255025;255026;255027;255028;255029;255030;255031	342100;342101;342102;342103;342104;342105;342106;342107;342108;342109;342110	342106			10	
QLQEAEQEMEEMK	1	Unmodified	1621.6964	0.6963727	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									1		2		49.553	48.737	2	1.0944E-13	44042	160511_QHF_FH_JSI11i_1	129.84	106.46			0.6295	0.56045	164.42	2	2	Median	2.1613	1.7924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.18335	0.17524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43314000	22295000	21019000	22429000	2707700	19722000	0	0	0	20885000	19588000	1296800	0	0	0	41726	2574	39282	255032;255033;255034	342111;342112;342113	342112			3	
QLQEDAAR	0	Unmodified	929.45666	0.45665842	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		8.0453	7.9282	2	0.00030838	5617	160511_QHF_FH_JSI11i_1	107.1	27.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41727	2162	39283	255035;255036	342114;342115	342114			2	
QLQEEDRGIDR	0	Unmodified	1357.6586	0.65860571	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.22	0.416		7	2							2	2	3	2	14.236	13.801	2;3	0.00015244	11311	160511_QHF_FH_JSI9i_2	73.632	54.5			1.1547	1.1392	21.088	9	1	Median	1.1893	1.0482	11.771	2	0	Median	0.94901	1.1709	32.222	2	0	Median	0.86548	0.87991	26.467	3	1	Plateau	1.175	1.2085	27.488	2	0	Median	380430000	182620000	197820000	66839000	28687000	38153000	89132000	45212000	43919000	142100000	66522000	75578000	82363000	42196000	40167000	41728	3635	39284	255037;255038;255039;255040;255041;255042;255043;255044;255045	342116;342117;342118;342119;342120	342117			5	
QLQEELAEHQVPVEK	1	Unmodified	1775.9054	0.90537792	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	44.874	43.934	3	0.0084022	37554	160511_QHF_FH_JSI12i_2	39.517	34.626			1.0214	1.0992	17.339	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1932	1.2426	NaN	1	1	Median	0.87439	0.97239	NaN	1	0	Median	64727000	31371000	33356000	0	0	0	0	0	0	36745000	14587000	22158000	27982000	16784000	11198000	41729	5458	39285	255046;255047	342121;342122	342121			2	
QLQEEQEK	1	Unmodified	1030.4931	0.49310351	4926	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	7.4218	6.9245	2	0.0028151	4834	160511_QHF_FH_JSI12i_1	75.738	26.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41730	4926	39286	255048;255049	342123;342124	342123			2	
QLQEERPELSESELTR	0	Unmodified	1942.9596	0.95959833	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							2	1	3	2	44.061	43.366	3	3.1734E-22	37345	160511_QHF_FH_JSI11i_2	177.58	161.05			0.99699	1.004	8.9455	8	2	Median	1.1293	0.95872	8.6302	2	2	Median	0.76208	0.93721	NaN	1	0	Median	1.0224	1.0343	13.737	3	0	Median	0.95152	1.0158	3.7656	2	0	Median	1132400000	538900000	593480000	331410000	165570000	165840000	163240000	73826000	89411000	390610000	177440000	213170000	247130000	122060000	125060000	41731	1117	39287	255050;255051;255052;255053;255054;255055;255056;255057	342125;342126;342127;342128;342129;342130;342131;342132;342133;342134;342135;342136	342132			12	
QLQEETPPGGPLTEALPPARK	1	Unmodified	2228.1801	0.18009622	5741	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.2	0.4		4	1								2	3		60.478	59.791	3	1.7138E-05	52753	160511_QHF_FH_JSI10i_2	69.259	38.575			0.94458	1.156	19.541	4	4	Median	NaN	NaN	NaN	0	0	Median	0.94458	1.156	6.9863	2	2	Median	1.0819	1.0861	32.524	2	2	Median	NaN	NaN	NaN	0	0	Median	154080000	94677000	59405000	0	0	0	103190000	58339000	44855000	50888000	36338000	14550000	0	0	0	41732	5741	39288	255058;255059;255060;255061;255062	342137;342138;342139;342140;342141;342142	342141			6	
QLQEIFENYKK	2	Unmodified	1438.7456	0.7456298	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			4								2		2	50.307	49.406	2;3	2.6422E-05	41394	160511_QHF_FH_JSI10i_3	96.64	82.961			3.5532	4.0015	85.349	4	4	Median	NaN	NaN	NaN	0	0	Median	5.2145	6.1895	26.573	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7572	1.8065	77.35	2	2	Median	278350000	117870000	160470000	0	0	0	92799000	17511000	75288000	0	0	0	185550000	100360000	85183000	41733	1016	39289	255063;255064;255065;255066	342143;342144;342145;342146	342144			4	
QLQEIFENYKK	2	Acetyl (K)	1480.7562	0.75619449	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.318	64.621	2	0.001238	34456	160513_QHF_FH_JSI11Kac_5	87.298	41.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1595500	1595500	0	0	0	0	0	0	0	1595500	1595500	0	0	0	0	41734	1016	39289	255067	342147	342147	826		1	
QLQELQQQQEEEERQR	0	Unmodified	2098.0039	0.0039227641	3612	Q8NC60	NOA1	Nitric oxide-associated protein 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			24.688	23.8	3	0.05022	20653	160511_QHF_FH_JSI10i_2	25.319	15.361			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5279900	0	5279900	0	0	0	5279900	0	5279900	0	0	0	0	0	0	41735	3612	39290	255068	342148	342148			1	
QLQEMLGLSK	1	Unmodified	1145.6114	0.6114445	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.124	56.779	2	2.5759E-06	48592	160511_QHF_FH_JSI12i_2	119.22	51.009			1.8451	2.0315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8451	2.0315	NaN	1	1	Median	75234000	26289000	48945000	0	0	0	0	0	0	0	0	0	75234000	26289000	48945000	41736	2674	39291	255069	342149	342149			1	
QLQEQHYQQYMQQLYQVQLAQQQAALQK	1	Unmodified	3461.715	0.71502173	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	86.465	85.993	3	3.5765E-32	74520	160511_QHF_FH_JSI12i_3	148.28	146.17			1.0433	1.0484	29.537	6	0	Median	1.0831	0.91411	NaN	1	0	Median	0.86114	1.0636	NaN	1	0	Median	1.5021	1.4397	50.902	2	0	Median	1.0636	1.1421	14.142	2	0	Median	305740000	166120000	139620000	53208000	31318000	21890000	89087000	55141000	33946000	87845000	42093000	45752000	75602000	37573000	38029000	41737	4700	39292	255070;255071;255072;255073;255074;255075	342150;342151;342152;342153;342154;342155;342156;342157;342158;342159;342160;342161;342162;342163;342164	342162			15	
QLQEQQR	0	Unmodified	928.47264	0.47264284	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		5.7384	-1.8642	2	0.018617	2004	160513_QHF_FH_JSI11Kac_4	71.715	25.051			1.0849	1.0907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0849	1.0907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3913900	2076100	1837800	0	0	0	0	0	0	3913900	2076100	1837800	0	0	0	41738	3570	39293	255076	342165	342165			1	
QLQGFPFYGK	1	Unmodified	1183.6026	0.60259438	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.71	1	3							1	1	1	1	2	67.692	66.866	2	1.1141E-07	58213	160511_QHF_FH_JSI11i_2	143.89	143.89			0.7452	0.83073	22.383	4	0	Median	NaN	NaN	NaN	0	0	Median	0.65407	0.79569	NaN	1	0	Median	0.84903	0.86731	NaN	1	0	Median	0.71562	0.75889	37.203	2	0	Median	649720000	334840000	314880000	0	0	0	160520000	97742000	62781000	277880000	126090000	151790000	211310000	111000000	100310000	41739	906	39294	255077;255078;255079;255080;255081	342166;342167;342168;342169;342170;342171	342169			5	
QLQGPEK	1	Unmodified	798.42357	0.42356738	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.83	4	3				2	2			2	2	4	3	10.029	7.0997	2	0.0043209	6493	160511_QHF_FH_JSI10i_1	98.997	9.3232			0.93878	0.99426	10.525	11	1	Median	1.2582	1.0501	19.529	2	1	Median	0.90208	1.0982	4.439	2	0	Median	0.95837	0.93637	6.0892	4	0	Median	0.91783	0.99426	8.6671	3	0	Median	2559200000	1173600000	1385600000	644610000	234430000	410180000	724600000	373920000	350670000	609830000	277810000	332020000	580180000	287440000	292740000	41740	434	39295	255082;255083;255084;255085;255086;255087;255088;255089;255090;255091;255092	342172;342173;342174;342175;342176;342177;342178;342179;342180;342181;342182	342175			11	
QLQLAQEAAQK	1	Unmodified	1226.6619	0.66190017	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	2	3	2	31.77	31.006	2	5.9825E-06	26336	160511_QHF_FH_JSI11i_2	114.51	74.468			1.0191	1.0565	56.624	9	7	Median	0.88504	0.77743	43.374	2	2	Median	1.015	1.2281	41.634	2	2	Median	0.86911	0.84348	93.039	3	2	Median	1.2544	1.3482	32.8	2	1	Median	454190000	215940000	238250000	59313000	29536000	29777000	42564000	25285000	17279000	199970000	93445000	106520000	152340000	67670000	84673000	41741	2636	39296	255093;255094;255095;255096;255097;255098;255099;255100;255101	342183;342184;342185;342186;342187;342188;342189;342190;342191;342192;342193	342190			11	
QLQLEAEEQRK	1	Unmodified	1370.7154	0.7153923	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	22.29	21.677	2;3	4.8653E-05	17772	160511_QHF_FH_JSI12i_3	62.705	43.974			0.89894	1.0005	25.731	3	0	Plateau	0.89894	0.7795	NaN	1	0	Median	1.0022	1.2382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80483	0.80844	NaN	1	0	Median	218480000	111430000	107040000	58277000	29769000	28508000	81477000	40134000	41342000	0	0	0	78723000	41530000	37193000	41742	3506	39297	255102;255103;255104;255105	342194;342195	342195			2	
QLQLITSLK	1	Unmodified	1042.6386	0.63864553	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	64.055	63.162	2	0.001792	54872	160511_QHF_FH_JSI11i_2	67.507	38.406			1.2967	1.3818	20.569	3	1	Median	NaN	NaN	NaN	0	0	Median	0.89294	1.095	NaN	1	0	Median	1.2967	1.3818	NaN	1	0	Median	1.5176	1.6502	NaN	1	1	Median	97010000	46853000	50156000	0	0	0	27342000	16660000	10682000	38508000	17741000	20767000	31159000	12452000	18707000	41743	8	39298	255106;255107;255108	342196;342197;342198	342197			3	
QLQNIIQATSR	0	Unmodified	1270.6993	0.69934831	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	4.96	1	5	3					2		2	4	4	1	46.277	43.396	2	1.8361E-18	37087	160511_QHF_FH_JSI12i_2	166.07	78.89			1.1473	1.1117	53.743	10	7	Median	1.0352	0.88058	33.55	2	0	Median	1.4402	1.7408	55.592	3	3	Median	0.96945	0.92956	73.468	4	4	Median	1.0037	1.1071	NaN	1	0	Median	960530000	523200000	437330000	171130000	80499000	90629000	232800000	129500000	103300000	429340000	249480000	179860000	127260000	63722000	63541000	41744	1085	39299	255109;255110;255111;255112;255113;255114;255115;255116;255117;255118;255119	342199;342200;342201;342202;342203;342204;342205;342206;342207;342208;342209;342210;342211;342212	342201			14	
QLQNISLAAASGGAK	1	Unmodified	1427.7732	0.77324153	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.12	2	5					2			2	2	2	3	49.222	47.091	2	1.4088E-30	40527	160511_QHF_FH_JSI11i_2	196.15	160.88			0.97912	1.0355	33.28	8	3	Median	1.5278	1.3478	76.358	2	2	Median	0.79226	0.9413	1.4503	2	0	Median	1.1801	1.182	12.29	2	1	Median	1.0686	1.1496	21.205	2	0	Median	541530000	277530000	264010000	94667000	39283000	55384000	142100000	83124000	58980000	121540000	66156000	55387000	183220000	88965000	94256000	41745	2517	39300	255120;255121;255122;255123;255124;255125;255126;255127;255128	342213;342214;342215;342216;342217;342218;342219;342220;342221;342222;342223;342224	342221			11	
QLQPNEEADYLGVR	0	Unmodified	1630.7951	0.79509919	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.004	53.341	2	7.5011E-05	48316	160511_QHF_FH_JSI11i_1	115.57	82.968			0.93883	0.96157	13.484	4	1	Median	0.98764	0.80779	NaN	1	0	Median	0.83144	0.96729	NaN	1	1	Median	1.1428	1.1234	NaN	1	0	Median	0.89243	0.95588	NaN	1	0	Median	172370000	84722000	87652000	43146000	15632000	27514000	40104000	22242000	17862000	44960000	22770000	22190000	44164000	24078000	20086000	41746	3832	39301	255129;255130;255131;255132	342225;342226;342227;342228;342229	342226			5	
QLQQAQAAGAEQEVEK	1	Unmodified	1726.8486	0.84859132	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.73	12				4	5				3	5	6	7	32.921	28.634	2;3	7.8849E-81	25180	160511_QHF_FH_JSI10i_1	248.19	232.8			1.0523	1.0507	41.346	20	8	Median	1.1574	0.93372	53.482	3	2	Median	0.95418	1.122	40.253	5	1	Median	1.0767	1.0507	45.774	6	2	Median	1.0095	1.0898	36.882	6	3	Median	5538200000	2534800000	3003500000	1178200000	529620000	648590000	1138100000	501090000	637010000	1624800000	669820000	954970000	1597100000	834220000	762910000	41747	1488	39302	255133;255134;255135;255136;255137;255138;255139;255140;255141;255142;255143;255144;255145;255146;255147;255148;255149;255150;255151;255152;255153	342230;342231;342232;342233;342234;342235;342236;342237;342238;342239;342240;342241;342242;342243;342244;342245;342246;342247;342248;342249;342250;342251;342252;342253;342254;342255;342256	342244			26	
QLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDK	1	Unmodified	4102.9217	0.92165628	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.866	3	2	3							1	3	2	2	87.038	86.799	4	1.4084E-64	77558	160511_QHF_FH_JSI11i_3	157.19	155.72			1.0416	1.0535	38.07	8	5	Median	1.2838	1.0924	NaN	1	0	Median	0.84118	1.0039	15.946	3	2	Median	1.5253	1.459	33.817	2	1	Median	0.8955	0.86227	70.945	2	2	Median	411690000	190620000	221070000	55145000	28141000	27005000	132740000	77505000	55238000	161840000	55029000	106810000	61956000	29943000	32014000	41748	1421	39303	255154;255155;255156;255157;255158;255159;255160;255161	342257;342258;342259;342260;342261;342262;342263;342264;342265;342266;342267;342268;342269;342270	342258			14	
QLQQENR	0	Unmodified	914.45699	0.45699277	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.0428	4.8036	2	0.006401	2744	160511_QHF_FH_JSI10i_1	79.307	40.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41749	5479	39304	255162	342271	342271			1	
QLQSEQPQTAAAR	0	Unmodified	1426.7165	0.71645494	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.269	14.81	2	8.7199E-31	12617	160511_QHF_FH_JSI12i_1	191.53	148.93			0.99386	0.97353	22.417	4	0	Median	1.791	1.4704	NaN	1	0	Median	0.761	0.89707	NaN	1	0	Median	1.0638	0.99895	NaN	1	0	Median	0.92848	0.94875	NaN	1	0	Median	224820000	112670000	112150000	43323000	19911000	23413000	46337000	24220000	22117000	66928000	33648000	33281000	68229000	34890000	33339000	41750	5321	39305	255163;255164;255165;255166	342272;342273;342274;342275;342276	342275			5	
QLQTFFHK	1	Unmodified	1047.5502	0.55016488	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							2	5	2	2	38.906	37.972	2;3	4.1616E-05	32129	160511_QHF_FH_JSI12i_3	136.75	90.737			0.73366	0.70376	61.734	11	8	Median	1.2538	1.0105	96.981	2	2	Median	0.52625	0.62251	73.381	5	5	Median	0.90446	0.84978	26.665	2	0	Median	1.0801	1.0878	74.515	2	1	Median	1143300000	584360000	558950000	144890000	69889000	74997000	370250000	201720000	168540000	261760000	145690000	116070000	366420000	167060000	199360000	41751	3313	39306	255167;255168;255169;255170;255171;255172;255173;255174;255175;255176;255177	342277;342278;342279;342280;342281;342282;342283;342284;342285;342286;342287	342286			11	
QLREYQELMNVK	1	Unmodified	1549.7923	0.79226242	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		6	10							4	6	5	1	51.576	50.658	2;3	8.7671E-08	42424	160511_QHF_FH_JSI10i_3	132.47	111.52		+	1.2065	1.0391	54.444	16	7	Median	1.3845	1.168	34.529	4	0	Median	0.82091	0.96498	76.542	6	2	Median	1.3206	1.3472	48.775	5	4	Median	0.86332	0.87125	NaN	1	1	Median	2872400000	1190500000	1681900000	462370000	191210000	271150000	1536900000	603840000	933090000	846840000	379790000	467050000	26284000	15698000	10586000	41752	51	39307	255178;255179;255180;255181;255182;255183;255184;255185;255186;255187;255188;255189;255190;255191;255192;255193	342288;342289;342290;342291;342292;342293;342294;342295;342296;342297;342298;342299;342300;342301;342302;342303;342304;342305;342306;342307;342308	342293			21	
QLREYQELMSVK	1	Unmodified	1522.7814	0.78136338	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							1	2	2	1	51.942	51.208	2;3	4.2809E-05	43863	160511_QHF_FH_JSI12i_3	101.6	80.932		+	1.1733	1.2324	64.615	6	4	Median	0.38413	0.32488	NaN	1	1	Median	1.3622	1.6125	36.565	2	1	Median	1.128	1.0495	21.272	2	1	Median	1.4059	1.5777	NaN	1	1	Median	363510000	169770000	193730000	29387000	21278000	8109500	115250000	57822000	57429000	147430000	63570000	83860000	71438000	27101000	44337000	41753	53;71	39308	255194;255195;255196;255197;255198;255199	342309;342310;342311;342312;342313;342314;342315	342315			7	
QLRFEDVVNQSSPK	1	Unmodified	1645.8424	0.84238373	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	48.933	48.647	2;3	6.4471E-05	42956	160511_QHF_FH_JSI11i_3	82.908	69.736			0.99309	0.99723	17.861	5	1	Median	NaN	NaN	NaN	0	0	Median	0.61929	0.77201	NaN	1	0	Median	1.1906	1.1324	1.2273	2	0	Median	0.90566	0.90559	13.633	2	1	Median	517630000	261810000	255820000	0	0	0	88273000	40288000	47986000	296370000	157000000	139370000	132990000	64522000	68468000	41754	2163	39309	255200;255201;255202;255203;255204	342316;342317;342318;342319;342320;342321;342322;342323	342316			8	
QLSAFGEYVAEILPK	1	Unmodified	1663.8821	0.88212328	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	101.49	101.37	2	8.6067E-15	89099	160511_QHF_FH_JSI11i_2	162.41	136.36			0.9715	0.95415	9.8086	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70269	0.87553	NaN	1	0	Median	0.9715	0.95415	NaN	1	0	Median	0.95024	1.0648	NaN	1	0	Median	372670000	182020000	190640000	0	0	0	108820000	58839000	49977000	146450000	71970000	74479000	117400000	51213000	66188000	41755	534	39310	255205;255206;255207	342324;342325	342325			2	
QLSALHR	0	Unmodified	823.46644	0.46643525	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		3	5						4	4	3	3	2	13.29	10.452	2	0.0050642	8766	160511_QHF_FH_JSI10i_3	104.45	41.73			0.95412	0.95323	52.72	12	5	Median	1.1242	0.95323	83.646	4	2	Median	0.6585	0.7482	18.643	3	1	Median	0.91142	0.89078	35.879	3	1	Median	1.3941	1.4697	40.585	2	1	Median	3374800000	1509200000	1865700000	1692500000	755780000	936700000	1001900000	423560000	578340000	446330000	228930000	217390000	234130000	100890000	133240000	41756	1951	39311	255208;255209;255210;255211;255212;255213;255214;255215;255216;255217;255218;255219	342326;342327;342328;342329;342330;342331;342332;342333;342334;342335;342336;342337	342328			12	
QLSAQSYGVTSSTAR	0	Unmodified	1554.7638	0.76379906	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			2	2	2	2	34.367	31.195	2	6.279E-30	28284	160511_QHF_FH_JSI12i_1	191.53	158.44			0.88536	0.89716	32.472	8	1	Median	0.83957	0.70246	57.641	2	1	Median	0.70838	0.85976	0.87513	2	0	Median	0.97478	0.95433	3.5897	2	0	Median	1.0674	1.1298	40.891	2	0	Median	314140000	179030000	135120000	119080000	70894000	48190000	32967000	18947000	14020000	55938000	31608000	24330000	106150000	57576000	48575000	41757	1684	39312	255220;255221;255222;255223;255224;255225;255226;255227	342338;342339;342340;342341;342342;342343;342344;342345;342346;342347;342348;342349;342350;342351;342352	342341			15	
QLSDAISIIGR	0	Unmodified	1171.6561	0.65608651	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.12	5.73	2	3	1					2		2	2	4		68.182	64.837	2	2.2123E-05	56770	160511_QHF_FH_JSI11i_2	101.97	52.551			0.8759	0.89707	21.132	7	3	Median	0.68765	0.57911	NaN	1	1	Median	0.66143	0.78738	18.445	2	1	Median	0.99644	0.97158	8.0136	4	1	Median	NaN	NaN	NaN	0	0	Median	381700000	191200000	190500000	3954600	2091300	1863300	127500000	71946000	55556000	250240000	117170000	133080000	0	0	0	41758	1844	39313	255228;255229;255230;255231;255232;255233;255234;255235	342353;342354;342355;342356;342357;342358;342359;342360	342358			8	
QLSDAISIIGREDFPQK	1	Unmodified	1916.0003	0.0003409361	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							2	3	2		76.198	75.564	2;3	3.0865E-08	67397	160511_QHF_FH_JSI11i_3	171.29	136.91			1.1625	1.0718	50.911	7	4	Median	2.0786	1.8006	69.176	2	1	Median	0.86308	1.0485	61.803	3	3	Median	1.1122	1.0439	3.7366	2	0	Median	NaN	NaN	NaN	0	0	Median	1401500000	645870000	755670000	219940000	94474000	125460000	369620000	190500000	179120000	811990000	360900000	451090000	0	0	0	41759	1844	39314	255236;255237;255238;255239;255240;255241;255242	342361;342362;342363;342364;342365;342366;342367;342368	342361			8	
QLSDGIQELQQSLNQDFHQK	1	Unmodified	2355.1455	0.14550162	4557	Q9BZD4	NUF2	Kinetochore protein Nuf2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.117	84.523	3	0.00011779	74342	160511_QHF_FH_JSI11i_2	55.745	47.457			2.1535	2.1567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1535	2.1567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40788000	16213000	24575000	0	0	0	0	0	0	40788000	16213000	24575000	0	0	0	41760	4557	39315	255243	342369	342369			1	
QLSEFDIER	0	Unmodified	1135.551	0.55095274	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					2	1	1	70.004	60.585	2	0.044813	23840	160513_QHF_FH_JSI11Kac_2	40.002	15.847			0.79653	0.84524	27.679	4	0	Median	NaN	NaN	NaN	0	0	Median	0.68096	0.80477	4.1177	2	0	Median	0.89406	0.86227	NaN	1	0	Median	1.3011	1.424	NaN	1	0	Median	50136000	23563000	26573000	0	0	0	14862000	8420300	6442200	2262800	1226300	1036500	33010000	13916000	19094000	41761	5208	39316	255244;255245;255246;255247	342370;342371	342370			2	
QLSESFK	1	Unmodified	837.42323	0.42323303	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.5	0.5	2	2								1	1		2	22.232	21.491	2	0.033424	18813	160511_QHF_FH_JSI12i_1	50.632	33.07			0.57928	0.6744	16.905	4	0	Median	1.0246	0.87228	NaN	1	0	Median	0.5656	0.6656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57387	0.63018	11.45	2	0	Median	508360000	298090000	210280000	146060000	72518000	73539000	134570000	82518000	52055000	0	0	0	227730000	143050000	84682000	41762	2277	39317	255248;255249;255250;255251	342372;342373;342374;342375	342373			4	
QLSESQVK	1	Unmodified	917.48181	0.48181054	2065	P67775	PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	10.8	4.92	1					3	1					3	2	15.064	9.1115	2	0.0030985	8920	160511_QHF_FH_JSI12i_1	75.109	39.908			0.86063	0.89836	58.38	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92016	0.91666	65.561	3	2	Median	0.51789	0.55045	69.272	2	1	Median	603640000	334260000	269380000	0	0	0	0	0	0	21920000	10967000	10953000	581720000	323290000	258430000	41763	2065	39318	255252;255253;255254;255255;255256	342376;342377;342378;342379;342380	342376			5	
QLSEVFIQLPSRK	1	Unmodified	1543.8722	0.8722273	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	1	By MS/MS				3	0			1							1				67.5	66.01	3	0.049899	54169	160511_QHF_FH_JSI9i_3	26.365	14.004			0.48325	0.3973	NaN	1	1	Median	0.48325	0.3973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22011000	14269000	7741900	22011000	14269000	7741900	0	0	0	0	0	0	0	0	0	41764	1736;1737	39319	255257	342381	342381			1	
QLSHPANFGPR	0	Unmodified	1222.6207	0.62070406	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				23.032	21.735	3	0.0029529	17469	160511_QHF_FH_JSI9i_3	40.616	37.084			1.9707	1.6049	NaN	1	1	Median	1.9707	1.6049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76839000	27465000	49374000	76839000	27465000	49374000	0	0	0	0	0	0	0	0	0	41765	2105	39320	255258	342382	342382			1	
QLSILVHPDK	1	Unmodified	1148.6554	0.65535823	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							3	2	3	3	43.699	42.878	3	1.4181E-06	37594	160511_QHF_FH_JSI11i_3	108.35	79.392			1.1633	1.119	83.557	11	7	Median	1.1778	0.99631	98.66	3	3	Plateau	1.2717	1.5083	69.754	2	1	Median	1.1633	1.1066	52.453	3	2	Median	1.0011	1.119	124.63	3	1	Median	1718100000	892310000	825780000	182820000	84155000	98663000	244900000	136800000	108100000	659250000	354430000	304810000	631130000	316920000	314210000	41766	587	39321	255259;255260;255261;255262;255263;255264;255265;255266;255267;255268;255269	342383;342384;342385;342386;342387;342388;342389;342390;342391;342392;342393;342394	342383			12	
QLSLPQQEAQK	1	Unmodified	1268.6725	0.67246486	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.279	32.675	2	4.8865E-07	29500	160511_QHF_FH_JSI12i_1	142.55	115.43			1.122	1.0276	32.889	4	0	Median	1.1715	0.96364	NaN	1	0	Median	0.86808	1.0103	NaN	1	0	Median	1.0747	1.0451	NaN	1	0	Median	1.8465	1.9351	NaN	1	0	Median	471200000	237050000	234150000	93201000	38916000	54285000	137680000	80407000	57274000	146130000	77546000	68585000	94183000	40181000	54002000	41767	726	39322	255270;255271;255272;255273	342395;342396;342397;342398;342399;342400;342401;342402;342403	342398			9	
QLSNPQQEVQNIFK	1	Unmodified	1671.858	0.8580338	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.43	0.495	4	3								1		2	4	72.68	71.856	2	5.2105E-06	62045	160511_QHF_FH_JSI12i_2	134.75	94.034			1.1964	1.1559	25.706	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4058	1.3686	23.892	2	1	Median	0.90911	1.0061	24.873	3	3	Median	74285000	33373000	40912000	0	0	0	0	0	0	32443000	14469000	17974000	41842000	18904000	22938000	41768	635	39323	255274;255275;255276;255277;255278;255279;255280	342404;342405;342406;342407;342408;342409;342410;342411	342406			8	
QLSQALDTSNVMVK	1	Unmodified	1532.7868	0.78684269	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			55.294	54.512	2	4.3146E-05	48375	160511_QHF_FH_JSI9i_1	117.79	65.214			0.98228	0.9358	66.742	2	2	Median	1.8777	1.5002	NaN	1	1	Median	0.51385	0.58375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49796000	24997000	24798000	25054000	7689600	17364000	24742000	17308000	7434000	0	0	0	0	0	0	41769	2787	39324	255281;255282	342412;342413	342413			2	
QLSQATAAATNHTTDNGVGPEEESVDPNQYYK	1	Unmodified	3434.5498	0.5498497	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	53.955	53.291	3;4	2.169E-91	48406	160511_QHF_FH_JSI11i_1	230.32	225.61			0.95871	0.94983	10.737	8	0	Median	1.2453	1.0208	14.229	2	0	Median	0.80291	0.94447	4.8446	2	0	Median	1.0562	1.016	19.684	2	0	Median	0.94328	0.96152	10.098	2	0	Median	1094500000	487430000	607100000	238020000	95918000	142100000	220960000	114190000	106770000	265090000	132640000	132440000	370460000	144680000	225780000	41770	2614	39325	255283;255284;255285;255286;255287;255288;255289;255290	342414;342415;342416;342417;342418;342419;342420;342421;342422;342423;342424;342425;342426;342427;342428;342429;342430;342431;342432	342419			19	
QLSQLGQK	1	Unmodified	900.50288	0.50288033	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.55	15.574	2	0.017484	12635	160511_QHF_FH_JSI12i_2	48.561	21.599			1.1629	1.3327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1629	1.3327	NaN	1	0	Median	35538000	20153000	15386000	0	0	0	0	0	0	0	0	0	35538000	20153000	15386000	41771	3785	39326	255291	342433	342433			1	
QLSQSLLPAIVELAEDAK	1	Unmodified	1924.0517	0.051707805	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	4	3	102.22	102.14	2;3	3.165E-117	88000	160511_QHF_FH_JSI12i_2	275.19	235.27			1.0137	0.98874	13.123	11	0	Median	1.1894	0.99412	3.664	2	0	Median	0.79116	0.97852	1.4685	2	0	Median	0.9834	0.98035	20.067	4	0	Median	1.1457	1.2012	11.616	3	0	Plateau	4317700000	2122900000	2194900000	560870000	270330000	290540000	742290000	406270000	336020000	1473400000	695680000	777730000	1541200000	750600000	790570000	41772	1345;1346	39327	255292;255293;255294;255295;255296;255297;255298;255299;255300;255301;255302	342434;342435;342436;342437;342438;342439;342440;342441;342442;342443;342444;342445;342446;342447;342448;342449;342450;342451;342452;342453;342454	342440			21	
QLSSDAEAQK	1	Unmodified	1075.5146	0.51456723	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		9.0548	8.6269	2	6.6602E-06	6152	160511_QHF_FH_JSI9i_1	107.79	77.226			1.3114	1.1594	12.232	2	0	Median	1.3118	1.0633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.311	1.2641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162940000	70079000	92862000	82878000	34642000	48236000	0	0	0	80062000	35437000	44625000	0	0	0	41773	2320	39328	255303;255304	342455;342456	342456			1	
QLSSEELEQFQK	1	Unmodified	1464.7096	0.70963822	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	52.473	51.717	3	8.0027E-06	47024	160511_QHF_FH_JSI12i_1	112.84	105.56			1.2737	1.4562	18.076	3	3	Plateau	1.2737	1.0291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2093	1.1218	NaN	1	1	Median	1.3979	1.4562	NaN	1	1	Median	202990000	90252000	112730000	59271000	25054000	34217000	0	0	0	68515000	32891000	35624000	75199000	32306000	42893000	41774	1520	39329	255305;255306;255307	342457;342458;342459	342458			3	
QLSSGVSEIR	0	Unmodified	1074.5669	0.56693715	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	5.94	2	4	6				3	4		4	5	5	5	30.462	26.216	2	9.9612E-19	22077	160511_QHF_FH_JSI12i_2	169.58	111.41			1.0768	1.096	26.892	18	4	Median	1.0837	0.89063	17.805	4	2	Median	0.7499	0.91423	13.892	5	2	Median	1.092	1.1208	21.938	5	0	Median	1.2376	1.3586	28.04	4	0	Median	5236800000	2456100000	2780700000	862760000	350210000	512550000	909020000	488100000	420920000	1920600000	912590000	1008000000	1544400000	705180000	839250000	41775	814	39330	255308;255309;255310;255311;255312;255313;255314;255315;255316;255317;255318;255319;255320;255321;255322;255323;255324;255325;255326	342460;342461;342462;342463;342464;342465;342466;342467;342468;342469;342470;342471;342472;342473;342474;342475;342476;342477;342478;342479;342480;342481;342482;342483;342484;342485	342461			26	
QLSSHFQIYPFSLR	0	Unmodified	1721.8889	0.88893999	4585	Q9C0D9	EPT1	Ethanolaminephosphotransferase 1	yes	yes	0	0	0	0	By MS/MS			By matching	16	0									2	1			1	81.123	72.085	3	0.0014939	39123	160513_QHF_FH_JSI9Kac_6	53.924	47.195			0.99816	0.95963	10.332	2	0	Median	1.0413	0.89202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95681	1.0324	NaN	1	0	Median	66804000	35196000	31608000	51380000	27652000	23728000	0	0	0	0	0	0	15424000	7543900	7880100	41776	4585	39331	255327;255328	342486	342486			1	
QLSSSVTGLTNIEEENCQR	0	Unmodified	2164.0066	0.0066248805	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	58.47	57.996	2	2.5238E-64	52584	160511_QHF_FH_JSI11i_1	268.92	246.04			0.79803	0.8402	20.738	4	4	Median	NaN	NaN	NaN	0	0	Median	0.83987	0.95718	NaN	1	1	Median	0.88896	0.86424	22.425	2	2	Median	0.6365	0.65625	NaN	1	1	Median	138110000	81539000	56573000	0	0	0	25460000	14035000	11425000	77859000	44723000	33137000	34792000	22781000	12011000	41777	1600	39332	255329;255330;255331;255332	342487;342488;342489;342490	342487			4	
QLSVEPYSQEEAER	0	Unmodified	1663.7689	0.76894402	145	O00488	ZNF593	Zinc finger protein 593	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.125	39.802	2	0.00072367	35627	160511_QHF_FH_JSI11i_1	88.441	73.469			1.5661	1.5638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5661	1.5638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131460000	61692000	69766000	0	0	0	0	0	0	131460000	61692000	69766000	0	0	0	41778	145	39333	255333	342491	342491			1	
QLSVVVPSYNEEK	1	Unmodified	1490.7617	0.76167379	5706	Q9Y673	ALG5	Dolichyl-phosphate beta-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	56.907	56.252	2	9.1128E-07	51149	160511_QHF_FH_JSI12i_1	128.85	94.469			1.3769	0.72586	46.626	4	3	Linear	0.731	0.60638	NaN	1	1	Median	0.54782	0.65234	NaN	1	1	Median	0.82582	0.80767	NaN	1	1	Median	1.5733	1.6818	NaN	1	0	Median	175510000	96070000	79440000	38257000	21568000	16689000	36940000	23005000	13934000	57142000	33441000	23701000	43172000	18056000	25116000	41779	5706	39334	255334;255335;255336;255337;255338	342492;342493;342494;342495;342496;342497	342494			6	
QLTAHLQDVNR	0	Unmodified	1293.6789	0.67894722	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	25.015	25.002	3	0.05666	20797	160511_QHF_FH_JSI12i_3	36	29.697			1.1753	1.1493	51.121	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8423	0.80066	NaN	1	0	Median	1.6399	1.6498	NaN	1	0	Median	111320000	56155000	55167000	0	0	0	0	0	0	56445000	29137000	27308000	54877000	27018000	27859000	41780	2516	39335	255339;255340	342498	342498			0	
QLTDFHK	1	Unmodified	887.45012	0.45011648	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		15.869	15.631	2	0.0165	12593	160511_QHF_FH_JSI11i_2	56.011	26.862			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41781	5666	39336	255341	342499	342499			1	
QLTEEDGVHSVIEENIK	1	Unmodified	1938.9535	0.95345032	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.685	55.329	3	0.0018633	47377	160511_QHF_FH_JSI12i_2	53.504	43.128			0.77398	0.85298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77398	0.85298	NaN	1	1	Median	58917000	29506000	29411000	0	0	0	0	0	0	0	0	0	58917000	29506000	29411000	41782	2348	39337	255342	342500	342500			1	
QLTEMGFPENR	0	Unmodified	1320.6132	0.61323542	4401	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	48.947	47.988	2	0.0053282	41082	160511_QHF_FH_JSI12i_2	63.32	52.169			1.6896	1.7795	68.386	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8492	2.8861	NaN	1	1	Median	1.0019	1.0972	NaN	1	1	Median	38459000	18642000	19817000	0	0	0	0	0	0	19077000	6089500	12987000	19382000	12552000	6829800	41783	4401	39338	255343;255344	342501;342502	342501			2	
QLTEMLPSILNQLGADSLTSLR	0	Unmodified	2399.273	0.27301032	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.46	102.47	3	1.7757E-18	91575	160511_QHF_FH_JSI11i_3	147.35	140.07			1.0606	1.0512	14.137	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0019	0.95121	NaN	1	0	Median	1.1228	1.1617	NaN	1	0	Median	596580000	279660000	316910000	0	0	0	0	0	0	130110000	63923000	66185000	466470000	215740000	250730000	41784	1172	39339	255345;255346	342503;342504	342503			2	
QLTFEEIAK	1	Unmodified	1077.5706	0.57062555	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8	6		2					2				1	1	2	60.684	54.861	2	2.7311E-06	47308	160511_QHF_FH_JSI11i_2	113.66	81.303			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41785	5441	39340	255347;255348;255349;255350	342505;342506;342507;342508	342507			4	
QLTHELSKFK	2	Acetyl (K)	1271.6874	0.68738664	5619	Q9Y4B5	MTCL1	Microtubule cross-linking factor 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	58.913	48.178	2	0.0044893	24661	160513_QHF_FH_JSI12Kac_5	71.223	42.136			0.95213	1.0469	11.265	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72545	0.86766	NaN	1	0	Median	1.076	1.0615	NaN	1	0	Median	0.95213	1.0469	NaN	1	0	Median	63368000	32070000	31298000	0	0	0	18727000	10532000	8195300	29400000	13746000	15654000	15241000	7792000	7449200	41786	5619	39341	255351;255352;255353	342509;342510;342511	342510	3504		3	
QLTLEQLHAVEISAVHSR	0	Unmodified	2030.0909	0.090887278	4373	Q9BRJ7	NUDT16L1	Protein syndesmos	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.102	66.102	4	0.0076183	58871	160511_QHF_FH_JSI11i_3	42.123	32.201			1.6363	1.5511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6363	1.5511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24323000	8945100	15378000	0	0	0	0	0	0	24323000	8945100	15378000	0	0	0	41787	4373	39342	255354	342512	342512			1	
QLTLNGIYTHITK	1	Unmodified	1500.83	0.83002813	2166	Q01167	FOXK2	Forkhead box protein K2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.486	64.195	3	0.00042985	55330	160511_QHF_FH_JSI12i_3	62.357	55.524			0.70614	0.70338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70614	0.70338	NaN	1	0	Median	61027000	34120000	26908000	0	0	0	0	0	0	0	0	0	61027000	34120000	26908000	41788	2166	39343	255355	342513	342513			1	
QLTLQHHMGSADLNATFYGPVK	1	Unmodified	2427.2005	0.20051408	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.657	63.371	3	7.2459E-23	54654	160511_QHF_FH_JSI12i_3	152.48	130.47			1.8018	1.9343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8018	1.9343	NaN	1	1	Median	19305000	6046200	13259000	0	0	0	0	0	0	0	0	0	19305000	6046200	13259000	41789	2455	39344	255356;255357	342514;342515	342515			2	
QLTLSGIYAHITK	1	Unmodified	1443.8086	0.80856441	2134	P85037	FOXK1	Forkhead box protein K1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	1	4	2	72.847	67.663	2;3	1.0896E-22	61032	160511_QHF_FH_JSI11i_3	145.09	129.82			0.91937	0.80806	17.767	5	2	Median	1.0494	0.85979	23.391	2	0	Median	0.62345	0.72736	NaN	1	0	Median	0.97249	0.92107	18.513	2	2	Median	NaN	NaN	NaN	0	0	Median	802960000	400640000	402320000	329500000	163440000	166060000	175310000	95626000	79679000	298150000	141570000	156590000	0	0	0	41790	2134	39345	255358;255359;255360;255361;255362;255363;255364;255365;255366;255367	342516;342517;342518;342519;342520;342521;342522;342523;342524;342525;342526;342527	342518			12	
QLTNPYGSWR	0	Unmodified	1220.5938	0.5938206	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.219	45.978	2	0.0042197	39256	160511_QHF_FH_JSI12i_3	66.683	40.826			1.1988	1.2033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1988	1.2033	NaN	1	1	Median	54697000	25423000	29275000	0	0	0	0	0	0	0	0	0	54697000	25423000	29275000	41791	4371	39346	255368	342528	342528			1	
QLTPPEGSSK	1	Unmodified	1042.5295	0.52948901	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	18.739	13.527	2	2.4704E-05	13231	160511_QHF_FH_JSI11i_1	99.815	87.459			0.80208	0.79314	25.113	8	1	Median	1.0223	0.84419	31.447	2	0	Median	0.87357	0.99873	32.028	2	1	Median	0.70737	0.68902	19.334	2	0	Median	0.764	0.8263	25.353	2	0	Median	1526000000	856970000	669050000	529140000	265830000	263310000	318190000	182360000	135830000	329020000	204900000	124120000	349660000	203870000	145790000	41792	40	39347	255369;255370;255371;255372;255373;255374;255375;255376	342529;342530;342531;342532;342533;342534;342535;342536;342537;342538;342539;342540;342541;342542;342543;342544	342532			16	
QLTQEMMTEK	1	Unmodified	1237.5683	0.56825906	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	31.924	31.189	2	2.6077E-09	28061	160511_QHF_FH_JSI12i_1	128.03	114.32			0.98588	1.0297	58.626	5	4	Median	1.6443	1.3403	90.98	2	2	Median	0.54006	0.64161	NaN	1	1	Median	1.7214	1.6884	NaN	1	1	Median	0.98588	1.0297	NaN	1	0	Median	729790000	298260000	431530000	270420000	109680000	160740000	177010000	73007000	104000000	127650000	50827000	76820000	154720000	64745000	89971000	41793	3328	39348	255377;255378;255379;255380;255381	342545;342546;342547;342548;342549	342546			5	
QLTQEMMTEK	1	Oxidation (M)	1253.5632	0.56317368	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				32.548	31.284	2	0.022479	27384	160511_QHF_FH_JSI9i_1	63.734	52.141			0.65524	0.55793	NaN	1	1	Median	0.65524	0.55793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28771000	15745000	13026000	28771000	15745000	13026000	0	0	0	0	0	0	0	0	0	41794	3328	39348	255382	342550	342550			1	
QLTQTTHTDKVPGDEDK	2	Unmodified	1911.9174	0.91739917	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.739	15.739	3	7.2024E-05	12972	160511_QHF_FH_JSI11i_3	84.94	69.686			1.8674	1.6811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8674	1.6811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52418000	15515000	36904000	0	0	0	0	0	0	52418000	15515000	36904000	0	0	0	41795	1576	39349	255383	342551	342551			1	
QLTSYVGSVRPLVTELDPDAPIR	0	Unmodified	2525.349	0.34895246	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.2	0.4		4	1							3	2			93.278	92.724	3	1.1599E-05	82074	160511_QHF_FH_JSI10i_2	57.496	37.42			0.90661	0.76674	35.656	3	0	Plateau	1.2616	1.0564	45.323	2	0	Median	0.68331	0.80587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56991000	29100000	27891000	39402000	19638000	19765000	17589000	9462200	8126300	0	0	0	0	0	0	41796	1895	39350	255384;255385;255386;255387;255388	342552;342553;342554;342555;342556;342557;342558;342559	342557			8	
QLTVQMMQNPQILAALQER	0	Unmodified	2211.1504	0.15039277	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.624	1	6	5							2	4	2	4	98.14	98.032	2;3	5.8204E-118	84950	160511_QHF_FH_JSI12i_3	333.11	304.21			1.189	1.211	11.456	12	0	Median	1.4178	1.2027	3.7867	2	0	Median	0.97134	1.1915	17.715	4	0	Median	1.2349	1.1278	10.91	2	0	Median	1.189	1.2533	6.4386	4	0	Median	1131900000	537300000	594560000	265460000	113190000	152270000	202280000	107140000	95148000	146340000	60063000	86272000	517790000	256920000	260870000	41797	1852	39351	255389;255390;255391;255392;255393;255394;255395;255396;255397;255398;255399;255400	342560;342561;342562;342563;342564;342565;342566;342567;342568;342569;342570;342571;342572;342573;342574;342575;342576;342577;342578;342579;342580;342581;342582	342582			23	
QLTVQMMQNPQILAALQER	0	Oxidation (M)	2227.1453	0.14530739	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	87.512	87.38	3	6.1E-05	75887	160511_QHF_FH_JSI12i_3	85.231	76.731			0.30436	0.31615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30436	0.31615	NaN	1	1	Median	14524000	11337000	3186500	0	0	0	0	0	0	0	0	0	14524000	11337000	3186500	41798	1852	39351	255401	342583	342583		1536	1	
QLTVTQQSQEEVAR	0	Unmodified	1615.8166	0.81656291	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	30.387	29.466	2	6.4425E-10	26136	160511_QHF_FH_JSI10i_1	108.37	84.029			1.3287	1.2343	3.056	2	2	Median	1.4385	1.208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2272	1.2613	NaN	1	1	Median	26777000	13618000	13159000	7805200	3693900	4111300	0	0	0	0	0	0	18972000	9924400	9047300	41799	481	39352	255402;255403;255404;255405	342584;342585;342586;342587;342588	342587			5	
QLTYEEQDLVWK	1	Unmodified	1550.7617	0.76167379	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	67.418	66.899	2	0.00020243	60919	160511_QHF_FH_JSI12i_1	96.113	77.368			1.3227	1.3393	9.8224	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2833	1.2494	NaN	1	1	Median	1.3634	1.4356	NaN	1	1	Median	35458000	14425000	21033000	0	0	0	0	0	0	13801000	5529100	8271800	21657000	8896400	12761000	41800	3636	39353	255406;255407	342589;342590	342590			2	
QLVAEQVTYQR	0	Unmodified	1333.699	0.69901396	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.94		6	1				1			2	3	1	2	38.584	36.261	2	1.1776E-72	31089	160511_QHF_FH_JSI11i_2	242.59	190.33			0.76122	0.91302	13.994	7	4	Median	1.3232	1.1232	NaN	1	0	Median	0.72852	0.86946	4.3339	3	2	Median	0.75549	0.75517	NaN	1	0	Median	0.89194	0.99826	11.526	2	2	Median	1008100000	508540000	499520000	165720000	71774000	93941000	272300000	143240000	129060000	240420000	123150000	117280000	329620000	170380000	159250000	41801	1674	39354	255408;255409;255410;255411;255412;255413;255414;255415	342591;342592;342593;342594;342595;342596;342597;342598;342599;342600	342598			10	
QLVAFIR	0	Unmodified	845.51232	0.51232281	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.827	55.013	2	0.010337	48354	160511_QHF_FH_JSI9i_2	75.269	18.758			0.93135	1.0676	17.457	3	1	Median	1.5569	1.3081	NaN	1	0	Median	0.88781	1.0676	NaN	1	0	Median	0.93135	0.92411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74605000	34102000	40503000	22894000	9129300	13765000	25593000	13010000	12582000	26118000	11963000	14155000	0	0	0	41802	2883	39355	255416;255417;255418;255419	342601;342602;342603;342604;342605;342606	342602			6	
QLVARPDVVEMHDVTAQDPK	1	Unmodified	2247.1318	0.13176581	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	4	2	2	51.73	51.006	3;4	1.1253E-18	45211	160511_QHF_FH_JSI11i_3	158.44	158.44			0.95322	0.90226	18.701	9	1	Median	0.95322	0.80283	NaN	1	0	Median	0.90738	1.0955	20.073	4	1	Median	0.97671	0.92928	4.1729	2	0	Median	0.76457	0.78064	6.8832	2	0	Median	1376900000	679200000	697700000	50297000	24769000	25528000	516890000	225800000	291090000	637790000	333850000	303940000	171930000	94783000	77147000	41803	2412	39356	255420;255421;255422;255423;255424;255425;255426;255427;255428	342607;342608;342609;342610;342611;342612;342613;342614;342615;342616;342617;342618;342619;342620;342621;342622	342609			16	
QLVDEFQASGGVGER	0	Unmodified	1590.7638	0.76379906	1555	P43155	CRAT	Carnitine O-acetyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	49.54	49.12	2	0.0026442	44618	160511_QHF_FH_JSI12i_1	57.836	32.45			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10885000	10885000	0	0	0	0	10885000	10885000	0	0	0	0	0	0	0	41804	1555	39357	255429;255430	342623;342624	342623			2	
QLVEETQEQVR	0	Unmodified	1357.6838	0.68375782	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.461	24.923	2	0.0055738	22135	160511_QHF_FH_JSI12i_1	55.064	36.624			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41805	629	39358	255431	342625	342625			1	
QLVEQVEQIQK	1	Unmodified	1340.73	0.72997974	4475	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.38	8	4	1			3	2			5	7	2	4	46.859	42.808	2;3	9.816E-88	38609	160511_QHF_FH_JSI11i_1	258.15	50.816			0.82685	0.89522	84.568	11	3	Median	0.38238	0.31677	165.79	3	2	Median	0.65586	0.78322	9.3657	4	1	Linear	0.99038	0.94772	14.184	2	0	Median	0.98448	1.0403	2.2933	2	0	Median	2654300000	1478600000	1175800000	605820000	322280000	283540000	639130000	408300000	230840000	613740000	338260000	275470000	795650000	409710000	385940000	41806	4475	39359	255432;255433;255434;255435;255436;255437;255438;255439;255440;255441;255442;255443;255444;255445;255446;255447;255448;255449	342626;342627;342628;342629;342630;342631;342632;342633;342634;342635;342636;342637;342638;342639;342640;342641;342642;342643;342644;342645;342646;342647;342648;342649;342650;342651;342652	342628			27	
QLVFNEILQAAYQLMVDVFGNYVIQK	1	Unmodified	3042.5889	0.58886515	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.78	101.06	3	6.8032E-44	59894	160513_QHF_FH_JSI10Kac_6	174.19	159.61			1.0951	1.2599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0951	1.2599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184870000	113280000	71590000	0	0	0	184870000	113280000	71590000	0	0	0	0	0	0	41807	2555	39360	255450	342653;342654	342654			2	
QLVHELDEAEYR	0	Unmodified	1500.7209	0.72087161	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							3	2	2	2	39.393	38.492	2;3	4.9835E-53	33037	160511_QHF_FH_JSI11i_2	242.82	211.4			1.0008	0.993	17.867	7	2	Median	1.1314	0.95601	5.3689	2	2	Median	0.93837	1.1557	36.775	2	0	Median	0.99676	1.0067	NaN	1	0	Median	0.91204	1.0274	12.509	2	0	Median	1299700000	663310000	636410000	230370000	94589000	135780000	545610000	280460000	265150000	176230000	92921000	83310000	347510000	195340000	152170000	41808	2244	39361	255451;255452;255453;255454;255455;255456;255457;255458;255459	342655;342656;342657;342658;342659;342660;342661;342662;342663;342664;342665	342662			11	
QLVHELDEAEYRDIR	0	Unmodified	1884.933	0.93298965	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	46.02	45.778	3;4	0.00051696	39080	160511_QHF_FH_JSI12i_3	63.037	45.756			1.0246	1.0331	42.359	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0246	1.0331	42.359	2	0	Median	162310000	86485000	75826000	0	0	0	0	0	0	0	0	0	162310000	86485000	75826000	41809	2244	39362	255460;255461	342666;342667;342668;342669	342669			4	
QLVHSFTEGR	0	Unmodified	1172.5938	0.5938206	3008	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	3	3	23.601	23.172	2;3	0.00017777	19524	160511_QHF_FH_JSI11i_3	69.979	61.674			1.3342	1.2832	24.44	6	1	Median	NaN	NaN	NaN	0	0	Median	0.87652	1.0121	11.257	2	0	Median	1.457	1.3312	15.625	2	0	Median	1.5348	1.6066	21.354	2	1	Median	341280000	170710000	170570000	0	0	0	124950000	72232000	52721000	127120000	57903000	69220000	89204000	40575000	48630000	41810	3008	39363	255462;255463;255464;255465;255466;255467;255468;255469	342670;342671;342672;342673;342674;342675;342676;342677;342678;342679;342680	342670			11	
QLVKPEQLPIYTAPPLQSK	2	Unmodified	2149.2147	0.21469081	3160	Q6UXV4	APOOL	MICOS complex subunit MIC27	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	74.065	73.775	3	0.00013173	63988	160511_QHF_FH_JSI12i_3	57.989	54.702			1.2006	1.1219	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2006	1.1219	NaN	1	0	Median	31592000	15385000	16206000	0	0	0	0	0	0	0	0	0	31592000	15385000	16206000	41811	3160	39364	255470	342681	342681			1	
QLVMTFQHFMR	0	Unmodified	1436.7057	0.70569602	4763	Q9H7B4	SMYD3	Histone-lysine N-methyltransferase SMYD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	75.365	66.896	3	5.5084E-28	36922	160513_QHF_FH_JSI10Kac_6	175.49	157.16			0.95944	1.0822	11.141	4	0	Median	1.3815	1.1883	NaN	1	0	Median	0.93162	1.0836	NaN	1	0	Median	0.92672	0.9099	NaN	1	0	Median	0.98808	1.0809	NaN	1	0	Median	140520000	75467000	65056000	23523000	8806800	14716000	86920000	54665000	32256000	15312000	5387800	9924000	14768000	6607800	8160700	41812	4763	39365	255471;255472;255473;255474	342682;342683;342684;342685;342686;342687;342688;342689	342689			8	
QLVNGEVSDER	0	Unmodified	1244.5997	0.59969384	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	20.824	20.625	2	0.00013367	18036	160511_QHF_FH_JSI12i_1	90.05	75.384			1.2493	1.3252	19.076	2	2	Median	NaN	NaN	NaN	0	0	Median	0.98961	1.158	NaN	1	1	Median	1.5771	1.5166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36831000	15572000	21259000	0	0	0	16751000	9563500	7187100	20081000	6008300	14072000	0	0	0	41813	4253	39366	255475;255476;255477	342690;342691;342692	342691			3	
QLVSKPLSSSVSNNK	2	Acetyl (K)	1628.8733	0.87334951	4175	Q96MU7	YTHDC1	YTH domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	55.096	44.971	2	0.0014853	24488	160513_QHF_FH_JSI12Kac_3	76.655	34.654			0.96903	1.0869	10.829	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0332	1.1726	10.73	2	0	Median	1.2651	1.193	NaN	1	0	Median	0.93353	0.99721	3.7753	2	0	Median	9819000	5056100	4762800	0	0	0	3068200	1500400	1567800	1859600	1028900	830690	4891200	2526800	2364400	41814	4175	39367	255478;255479;255480;255481;255482	342693;342694;342695;342696;342697;342698;342699;342700;342701;342702	342698	3068		10	
QLVSSSVHSK	1	Unmodified	1070.572	0.57202253	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6.38		1	1						1		1	1	1	10.965	7.7333	2;3	0.0017007	6789	160511_QHF_FH_JSI12i_3	76.17	31.723			0.16496	0.16985	106.82	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.52749	0.65065	NaN	1	1	Median	1.3864	1.3677	NaN	1	0	Median	0.16496	0.16646	NaN	1	1	Median	265660000	221440000	44219000	0	0	0	27481000	15609000	11872000	6786900	2874200	3912700	231390000	202960000	28434000	41815	4701	39368	255483;255484;255485	342703;342704;342705	342705			3	
QLWDTANTVK	1	Unmodified	1174.5982	0.59823728	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		40.755	40.36	2	0.0043506	34566	160511_QHF_FH_JSI11i_2	66.19	40.296			0.31372	0.31168	53.009	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31372	0.31168	53.009	2	2	Median	NaN	NaN	NaN	0	0	Median	176540000	142180000	34363000	0	0	0	0	0	0	176540000	142180000	34363000	0	0	0	41816	1042	39369	255486;255487	342706;342707	342707			2	
QLWIWLHPTLK	1	Unmodified	1433.8183	0.81834123	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	4	5	4	4	82.185	77.986	2;3;4	1.613E-14	43134	160513_QHF_FH_JSI10Kac_6	150.1	125.72			1.1025	1.1463	29.424	17	2	Median	1.6714	1.4125	31.041	4	1	Median	0.83137	0.98908	45.71	5	1	Median	1.1883	1.118	14.997	4	0	Median	1.0297	1.0889	17.159	4	0	Median	3615500000	1835100000	1780400000	762430000	363360000	399070000	1521100000	871580000	649540000	771280000	334670000	436610000	560650000	265490000	295170000	41817	4288	39370	255488;255489;255490;255491;255492;255493;255494;255495;255496;255497;255498;255499;255500;255501;255502;255503;255504	342708;342709;342710;342711;342712;342713;342714;342715;342716;342717;342718;342719;342720;342721;342722;342723;342724;342725;342726;342727;342728;342729;342730;342731;342732;342733;342734;342735;342736;342737;342738	342735			30	
QLYDFIHTSFAEVVSK	1	Unmodified	1882.9465	0.94651445	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.347	94.342	3	0.044307	81734	160511_QHF_FH_JSI12i_3	28.166	15.611			2.3994	2.5475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3994	2.5475	NaN	1	1	Median	20945000	7471800	13474000	0	0	0	0	0	0	0	0	0	20945000	7471800	13474000	41818	3901	39371	255505	342739	342739			1	
QLYEEEIR	0	Unmodified	1078.5295	0.52948901	51	CON__P05787;P05787;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	33.564	30.346	2	2.7824E-05	26433	160511_QHF_FH_JSI9i_2	138.4	96.743		+	0.77198	0.75742	15.63	11	0	Median	0.90026	0.75504	0.44382	2	0	Median	0.61596	0.72597	18.119	3	0	Median	0.79581	0.78214	3.5181	3	0	Plateau	1.0078	1.079	25.364	3	0	Plateau	1703500000	901620000	801870000	356830000	177070000	179750000	442440000	251500000	190930000	540300000	287280000	253020000	363930000	185760000	178170000	41819	51	39372	255506;255507;255508;255509;255510;255511;255512;255513;255514;255515;255516	342740;342741;342742;342743;342744;342745;342746;342747;342748;342749;342750;342751;342752;342753;342754;342755;342756;342757	342752			18	
QLYEEEIRELQSQISDTSVVLSMDNSR	0	Oxidation (M)	3184.5194	0.5194012	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1			By MS/MS		2	0		1										1		100.87	100.74	3	2.9812E-17	88424	160511_QHF_FH_JSI11i_2	120.13	110.81		+	1.499	1.4548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.499	1.4548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	148410000	40811000	107600000	0	0	0	0	0	0	148410000	40811000	107600000	0	0	0	41820	51	39373	255517	342758	342758		21	1	
QLYEEEIRELQSQISDTSVVLSMDNSR	0	Unmodified	3168.5245	0.52448658	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS			By MS/MS	16	0									2	1			1	92.489	83.378	3	3.5249E-28	46834	160513_QHF_FH_JSI9Kac_6	184.4	165.5		+	1.2284	1.1638	34.665	2	2	Median	1.0679	0.9108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.413	1.4871	NaN	1	1	Median	72833000	22797000	50036000	25413000	9975500	15438000	0	0	0	0	0	0	47420000	12821000	34598000	41821	51	39373	255518;255519	342759;342760	342759			2	
QLYEMVLTYNFHQPK	1	Unmodified	1909.9397	0.93965493	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	78.478	70.574	3	4.9401E-17	36833	160513_QHF_FH_JSI12Kac_6	140.19	122.91			0.9737	1.1441	65.972	5	4	Median	0.32489	0.27192	NaN	1	1	Median	1.0667	1.2595	13.591	2	2	Median	0.77745	0.75933	NaN	1	1	Median	1.1069	1.1761	NaN	1	0	Median	571480000	344320000	227160000	198610000	153760000	44849000	203030000	103570000	99459000	87593000	45608000	41985000	82252000	41383000	40869000	41822	1316	39374	255520;255521;255522;255523;255524	342761;342762;342763;342764;342765;342766	342763			6	
QLYEMVLTYNFHQPK	1	Oxidation (M)	1925.9346	0.93456956	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	73.001	63.937	3	2.2424E-07	33451	160513_QHF_FH_JSI12Kac_6	109.1	99.316			0.97336	0.91195	17.809	2	1	Median	0.93802	0.80404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.01	1.0343	NaN	1	0	Median	40224000	18447000	21776000	20193000	7216000	12977000	0	0	0	0	0	0	20031000	11231000	8799600	41823	1316	39374	255525;255526	342767;342768;342769;342770	342769		966	4	
QLYEPLVMQLIHWFTNNK	1	Unmodified	2273.1667	0.16669476	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	2	3	5	1	100.36	92.661	2;3	3.3421E-239	52307	160513_QHF_FH_JSI9Kac_6	391.76	333.96			1.1264	1.0707	22.127	10	3	Median	1.1604	1.0434	12.627	2	0	Median	0.90241	0.9588	18.529	3	1	Plateau	1.4196	1.3652	26.144	4	2	Linear	1.3414	1.4001	NaN	1	0	Median	21052000000	9804600000	11247000000	4516200000	2016300000	2499900000	8487700000	4181700000	4306000000	7469600000	3364600000	4105100000	578260000	242010000	336250000	41824	2094	39375	255527;255528;255529;255530;255531;255532;255533;255534;255535;255536;255537	342771;342772;342773;342774;342775;342776;342777;342778;342779;342780;342781;342782;342783;342784	342778			14	
QLYEPLVMQLIHWFTNNK	1	Oxidation (M)	2289.1616	0.16160938	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	98.503	90.076	2;3	2.1909E-56	53988	160513_QHF_FH_JSI10Kac_6	193.22	178.75			1.0708	1.1119	4.8092	4	0	Median	1.3611	1.1532	NaN	1	0	Median	0.92044	1.101	NaN	1	0	Median	1.083	1.0303	NaN	1	0	Median	1.0588	1.1228	NaN	1	0	Median	1731400000	829270000	902150000	428800000	146900000	281900000	536960000	306600000	230360000	442020000	219780000	222230000	323640000	155980000	167660000	41825	2094	39375	255538;255539;255540;255541;255542	342785;342786;342787;342788;342789;342790;342791;342792	342791		1775	8	
QLYEPLVMQLIHWFTNNKK	2	Unmodified	2401.2617	0.26165778	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	97.978	89.889	4	4.6647E-26	53597	160513_QHF_FH_JSI10Kac_6	157.97	145.67			1.4352	0.67917	43.443	3	0	Plateau	1.5389	1.3264	NaN	1	0	Median	0.57251	0.67917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4352	1.5335	NaN	1	0	Median	590190000	319640000	270540000	108080000	31998000	76080000	397790000	256010000	141770000	0	0	0	84323000	31630000	52692000	41826	2094	39376	255543;255544;255545	342793;342794;342795	342794			3	
QLYESLMAAHASR	0	Unmodified	1475.7191	0.71909747	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6	5.79		1	2						1		3	1		45.491	41.787	2;3	0.0030039	36480	160511_QHF_FH_JSI11i_3	69.451	52.613			0.71359	0.85044	173.82	3	2	Median	NaN	NaN	NaN	0	0	Median	0.71359	0.85044	173.82	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89852000	67553000	22299000	0	0	0	89852000	67553000	22299000	0	0	0	0	0	0	41827	2842	39377	255546;255547;255548;255549	342796;342797;342798;342799	342796			3	
QLYETTDTTTR	0	Unmodified	1327.6256	0.62557424	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.268	19.759	2	0.0017266	17265	160511_QHF_FH_JSI12i_1	75.509	58.595			0.81297	0.80907	15.885	4	0	Median	0.76295	0.62661	NaN	1	0	Median	0.66652	0.7841	NaN	1	0	Median	0.86627	0.83483	NaN	1	0	Median	0.86961	0.90807	NaN	1	0	Median	235050000	127840000	107210000	58314000	30330000	27983000	52431000	36309000	16122000	48099000	21854000	26245000	76208000	39346000	36862000	41828	5327	39378	255550;255551;255552;255553	342800;342801;342802;342803	342800			4	
QLYHLGVVEAYSGLTK	1	Unmodified	1776.941	0.94103514	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.65		5	4						6	3	3	5	4	73.329	69.127	2;3	3.2455E-43	35933	160513_QHF_FH_JSI9Kac_6	184.21	139.59			1.0132	1.0618	21.054	13	5	Median	0.93857	0.81381	12.107	2	0	Median	0.9045	1.0618	20.071	3	1	Plateau	1.088	1.0911	17.44	4	2	Median	1.1074	1.2053	10.468	4	2	Median	1558800000	714840000	844000000	349640000	137100000	212530000	330500000	195610000	134890000	528960000	202470000	326490000	349750000	179660000	170090000	41829	2265	39379	255554;255555;255556;255557;255558;255559;255560;255561;255562;255563;255564;255565;255566;255567;255568	342804;342805;342806;342807;342808;342809;342810;342811;342812;342813;342814;342815;342816;342817;342818;342819;342820;342821;342822	342815			19	
QLYLNPK	1	Unmodified	874.49125	0.49125301	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	31.245	30.464	2	0.0098209	25777	160511_QHF_FH_JSI12i_2	77.496	58.765			0.82996	0.83502	31.645	5	0	Median	1.1026	0.98899	NaN	1	0	Median	1.2021	1.4574	NaN	1	0	Median	0.72867	0.71557	21.831	2	0	Median	0.75213	0.82905	NaN	1	0	Median	300450000	146730000	153720000	48059000	23715000	24344000	62741000	28905000	33836000	130160000	65191000	64965000	59491000	28914000	30577000	41830	2605	39380	255569;255570;255571;255572;255573	342823;342824;342825;342826;342827;342828;342829;342830;342831	342825			9	
QLYLPMLFK	1	Unmodified	1151.6413	0.64128807	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	100.24	100.14	2	8.6368E-07	86235	160511_QHF_FH_JSI12i_2	136.11	111.96			1.1488	1.0837	9.8116	8	0	Median	1.2169	1.0158	2.3464	2	0	Median	0.88877	1.0653	4.0676	2	0	Median	1.1488	1.1113	5.21	2	0	Median	1.191	1.274	7.3567	2	0	Median	437700000	217960000	219730000	72266000	32693000	39573000	91807000	47551000	44256000	160290000	80172000	80114000	113340000	57544000	55792000	41831	231	39381	255574;255575;255576;255577;255578;255579;255580;255581	342832;342833;342834;342835;342836;342837;342838;342839;342840;342841;342842;342843;342844;342845	342834			14	
QLYNIYAK	1	Unmodified	1011.5389	0.53893149	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	40.335	39.488	2	0.00019938	33759	160511_QHF_FH_JSI12i_2	120.65	95.826			0.88027	0.96678	14.157	5	1	Median	0.88027	0.75659	NaN	1	0	Median	0.86642	1.0458	4.4877	2	0	Median	0.95778	0.96678	NaN	1	1	Median	0.77879	0.85757	NaN	1	0	Median	751780000	358880000	392900000	109900000	60032000	49869000	211090000	109750000	101340000	302940000	112730000	190210000	127850000	76363000	51485000	41832	2759	39382	255582;255583;255584;255585;255586;255587	342846;342847;342848;342849;342850;342851	342847			6	
QLYNIYAKHTK	2	Acetyl (K)	1419.751	0.75104953	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	47.07	37.704	2;3	9.9715E-10	20543	160513_QHF_FH_JSI11Kac_6	120.57	103.36			0.7738	0.79482	44.492	4	0	Median	0.92533	0.80101	NaN	1	0	Median	0.81772	0.96035	NaN	1	0	Median	0.37174	0.35407	NaN	1	0	Median	0.73224	0.78868	NaN	1	0	Median	110250000	73572000	36682000	10655000	6792000	3863300	29671000	14941000	14731000	54203000	42762000	11441000	15725000	9077500	6647100	41833	2759	39383	255588;255589;255590;255591;255592	342852;342853;342854;342855;342856;342857	342853	2669		6	
QLYQTLTDYDIR	0	Unmodified	1527.7569	0.75692277	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	64.143	63.323	2	5.0838E-23	54235	160511_QHF_FH_JSI12i_2	178.81	161.01			1.1771	1.0219	18.475	7	1	Median	1.402	1.1873	21.208	2	0	Median	0.76236	0.91514	NaN	1	0	Median	1.0946	1.0626	7.5441	2	1	Median	1.1523	1.2305	28.86	2	0	Median	411150000	205910000	205240000	73136000	28908000	44228000	49413000	28652000	20762000	159930000	81800000	78130000	128670000	66552000	62120000	41834	2076	39384	255593;255594;255595;255596;255597;255598;255599	342858;342859;342860;342861;342862;342863;342864;342865;342866;342867	342860			10	
QLYTVTMDVHSR	0	Unmodified	1448.7082	0.70819844	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		51.76	42.039	3	0.040508	22833	160513_QHF_FH_JSI11Kac_6	38.337	29.824			1.1826	1.1584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1826	1.1584	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16296000	6642100	9654000	0	0	0	0	0	0	16296000	6642100	9654000	0	0	0	41835	4623	39385	255600	342868	342868			0	
QLYVLGHEAMK	1	Unmodified	1287.6645	0.66454271	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	6.16		9	8						7	7	4	6	7	47.566	44.275	2;3	7.051E-10	38066	160511_QHF_FH_JSI12i_2	145.99	109.59			1.2025	1.0693	32.198	23	11	Median	1.2464	1.0454	14.989	6	3	Median	0.88171	1.072	13.89	4	1	Median	1.135	1.144	38.46	6	2	Median	1.2499	1.3472	46.86	7	5	Median	6018600000	2926700000	3091900000	979010000	396320000	582690000	1274600000	699450000	575160000	1850700000	908730000	941990000	1914300000	922190000	992070000	41836	1208	39386	255601;255602;255603;255604;255605;255606;255607;255608;255609;255610;255611;255612;255613;255614;255615;255616;255617;255618;255619;255620;255621;255622;255623;255624	342869;342870;342871;342872;342873;342874;342875;342876;342877;342878;342879;342880;342881;342882;342883;342884;342885;342886;342887;342888;342889;342890;342891;342892;342893;342894;342895	342870			24	
QLYVLGHEAMK	1	Oxidation (M)	1303.6595	0.65945733	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									3			2	1	43.479	33.944	2;3	0.0079567	17726	160513_QHF_FH_JSI12Kac_6	49.632	41.119			0.55532	0.5656	12.022	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54199	0.51951	NaN	1	1	Median	0.56899	0.61578	NaN	1	1	Median	20998000	11910000	9088200	0	0	0	0	0	0	9419900	5270400	4149500	11578000	6639300	4938700	41837	1208	39386	255625;255626;255627	342896;342897;342898	342898		838	3	
QMAAEEAMK	1	Unmodified	1007.4416	0.44160198	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	17.392	16.934	2	0.0024328	14552	160511_QHF_FH_JSI12i_1	64.711	20.595			1.3235	1.392	69.082	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3235	1.392	69.082	2	1	Median	257490000	141460000	116030000	0	0	0	0	0	0	0	0	0	257490000	141460000	116030000	41838	1857	39387	255628;255629	342899;342900	342899			2	
QMAAVLLR	0	Unmodified	900.52151	0.52150728	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	48.663	44.94	2	0.00015292	37654	160511_QHF_FH_JSI10i_3	124.59	47.748			0.98987	0.91244	35.12	12	2	Median	0.4888	0.41578	47.009	3	2	Plateau	0.71014	0.85258	23.156	3	0	Median	1.0242	0.97525	44.697	3	0	Median	1.1483	1.1438	29.962	3	0	Median	1628200000	953980000	674210000	318300000	208760000	109540000	361080000	224950000	136130000	551740000	324600000	227150000	397070000	195670000	201390000	41839	127	39388	255630;255631;255632;255633;255634;255635;255636;255637;255638;255639;255640;255641	342901;342902;342903;342904;342905;342906;342907;342908;342909;342910;342911;342912;342913;342914	342904			14	
QMADTGK	1	Unmodified	749.33779	0.33778884	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	4.8829	4.536	2	0.0044769	2415	160511_QHF_FH_JSI11i_1	98.418	64.68			0.9635	1.0943	25.375	7	0	Median	1.1434	0.90093	NaN	1	0	Median	0.95438	1.1625	1.178	2	0	Median	0.99673	0.9984	12.973	2	0	Median	0.98971	1.079	56.45	2	0	Median	11378000000	5636600000	5741200000	1104800000	529380000	575430000	3482100000	1759500000	1722500000	3367500000	1380200000	1987300000	3423400000	1967400000	1456000000	41840	2161	39389	255642;255643;255644;255645;255646;255647;255648	342915;342916;342917;342918;342919;342920;342921	342916			7	
QMAFMLGR	0	Unmodified	952.46228	0.46227785	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7.6	6.86		3							2	2	1	1	1	59.16	55.126	2	0.00084564	30344	160513_QHF_FH_JSI10Kac_6	104.8	86.421			1.0846	1.001	14.359	5	0	Median	1.1651	1.0161	2.1162	2	0	Median	1.0846	1.2961	NaN	1	0	Median	0.88116	0.88979	NaN	1	0	Median	0.84701	0.94386	NaN	1	0	Median	460090000	239580000	220510000	140900000	65508000	75392000	43180000	22950000	20231000	169180000	88598000	80586000	106820000	62523000	44298000	41841	2370	39390	255649;255650;255651;255652;255653	342922;342923;342924	342924			3	
QMAMQIAWSR	0	Unmodified	1220.5794	0.57943287	4843	Q9HBL7	PLGRKT	Plasminogen receptor (KT)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	67.373	58.617	2	7.6443E-12	32251	160513_QHF_FH_JSI10Kac_6	148.5	109.25			0.79191	0.78146	57.343	3	0	Median	0.42385	0.35509	NaN	1	0	Median	0.918	1.0833	NaN	1	0	Median	0.79191	0.78146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64995000	35760000	29235000	14874000	8989000	5885400	36819000	20325000	16495000	13301000	6446300	6855000	0	0	0	41842	4843	39391	255654;255655;255656;255657	342925;342926;342927;342928;342929;342930;342931	342931			7	
QMASQAPAVNTLTESTLK	1	Unmodified	1888.9564	0.95642721	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.419	59.773	2	9.086E-53	54408	160511_QHF_FH_JSI12i_1	218.31	179.67			0.94683	0.95565	12.796	4	0	Median	1.2369	1.0075	NaN	1	0	Median	0.65014	0.75797	NaN	1	0	Median	1.0118	0.97261	NaN	1	0	Median	0.88607	0.93899	NaN	1	0	Median	158680000	82118000	76564000	35432000	15826000	19606000	41559000	22520000	19039000	36499000	20786000	15713000	45193000	22987000	22207000	41843	1443	39392	255658;255659;255660;255661	342932;342933;342934;342935;342936;342937;342938	342935			7	
QMDPGDFINSSETR	0	Unmodified	1595.6886	0.68858521	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		55.97	55.556	2	0.0084101	50340	160511_QHF_FH_JSI11i_1	54.259	47.726			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41844	476	39393	255662	342939	342939			1	
QMDSNWTLMK	1	Unmodified	1252.558	0.55802872	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.029	55.673	2	2.028E-09	47734	160511_QHF_FH_JSI12i_2	131.11	105.17			0.56731	0.63976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56731	0.63976	NaN	1	0	Median	29648000	19545000	10103000	0	0	0	0	0	0	0	0	0	29648000	19545000	10103000	41845	4930	39394	255663	342940	342940			1	
QMDTNNDGK	1	Unmodified	1021.4135	0.41347298	1468	P37235;P84074	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.9222	4.6955	2	1.044E-08	2564	160511_QHF_FH_JSI12i_1	153.08	145.14			1.9824	2.0017	47.787	3	1	Median	NaN	NaN	NaN	0	0	Median	3.8492	4.4694	NaN	1	0	Median	1.9758	1.91	NaN	1	1	Median	1.9824	2.0017	NaN	1	0	Median	264300000	76805000	187500000	0	0	0	70383000	18632000	51751000	79347000	22049000	57299000	114570000	36124000	78447000	41846	1468	39395	255664;255665;255666	342941;342942;342943	342942			3	
QMEDGHTLFDYEVR	0	Unmodified	1738.7621	0.7620845	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	58.118	57.185	3	0.00049312	50529	160511_QHF_FH_JSI10i_2	57.794	44.961			1.1901	1.2412	6.4921	4	0	Median	1.4095	1.2608	NaN	1	0	Median	0.92549	1.1094	NaN	1	0	Median	1.2425	1.2218	NaN	1	0	Median	1.1398	1.2832	NaN	1	0	Median	219680000	100750000	118930000	46626000	21339000	25287000	42637000	20945000	21692000	81139000	34007000	47132000	49277000	24460000	24817000	41847	4259	39396	255667;255668;255669;255670	342944;342945;342946	342946			3	
QMELLENK	1	Unmodified	1003.5008	0.50083142	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.776	35.473	2	0.0031886	31734	160511_QHF_FH_JSI10i_1	80.684	61.901			0.16788	0.17894	4.3585	2	2	Median	NaN	NaN	NaN	0	0	Median	0.15963	0.18454	NaN	1	1	Median	0.17656	0.17351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	236810000	183980000	52833000	0	0	0	98854000	75986000	22867000	137960000	107990000	29965000	0	0	0	41848	4448	39397	255671;255672	342947;342948	342948			2	
QMENGMLVTDSAGK	1	Unmodified	1479.6698	0.66976402	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			37.546	37.176	2	0.00093307	33318	160511_QHF_FH_JSI10i_1	84.169	69.962			1.2193	1.418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2193	1.418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29062000	12917000	16145000	0	0	0	29062000	12917000	16145000	0	0	0	0	0	0	41849	1403	39398	255673	342949	342949			1	
QMENTALQNEVQR	0	Unmodified	1559.7362	0.7362041	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	31.994	31.422	2	0.0085284	28296	160511_QHF_FH_JSI12i_1	48.004	31.372			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41850	2691	39399	255674	342950	342950			1	
QMEQISQFLQAAER	0	Unmodified	1677.8145	0.81445442	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	5.2	7	8	6						4	5	6	8	6	82.79	81.16	2;3	2.2965E-135	71455	160511_QHF_FH_JSI12i_3	286.61	260.56			1.0059	0.94907	18.914	24	4	Median	1.1078	0.94889	15.259	5	2	Median	0.68275	0.84117	4.9124	5	0	Median	1.0247	1.0467	20.67	8	2	Median	1.0236	1.1157	13.473	6	0	Median	7195400000	3373900000	3821500000	1097000000	432590000	664450000	1455900000	815510000	640410000	2615200000	1141800000	1473500000	2027200000	984070000	1043100000	41851	1470	39400	255675;255676;255677;255678;255679;255680;255681;255682;255683;255684;255685;255686;255687;255688;255689;255690;255691;255692;255693;255694;255695;255696;255697;255698;255699	342951;342952;342953;342954;342955;342956;342957;342958;342959;342960;342961;342962;342963;342964;342965;342966;342967;342968;342969;342970;342971;342972;342973;342974;342975;342976;342977;342978;342979;342980;342981;342982;342983;342984;342985;342986;342987;342988;342989;342990;342991;342992;342993;342994	342991			44	
QMEQISQFLQAAER	0	Oxidation (M)	1693.8094	0.80936904	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	1	4	70.256	69.284	2	2.795E-21	60599	160511_QHF_FH_JSI11i_2	176.05	159.11			1.2767	1.2265	11.509	5	2	Median	1.4035	1.2085	NaN	1	0	Median	1.0357	1.2265	NaN	1	0	Median	1.1693	1.1864	NaN	1	0	Median	1.3339	1.484	3.508	2	2	Median	254300000	104360000	149940000	38607000	17162000	21445000	50204000	23055000	27150000	57230000	20524000	36706000	108260000	43616000	64642000	41852	1470	39400	255700;255701;255702;255703;255704;255705;255706	342995;342996;342997;342998;342999;343000;343001;343002;343003	342999		1141	9	
QMEVAQANR	0	Unmodified	1045.4975	0.49747738	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	11.708	11.304	2	2.0133E-05	8803	160511_QHF_FH_JSI9i_1	106.93	78.414			0.84357	0.81337	14.551	4	0	Median	0.89681	0.72923	NaN	1	0	Median	0.79349	0.90721	NaN	1	0	Median	0.75837	0.71847	NaN	1	0	Median	0.9333	0.95133	NaN	1	0	Median	353950000	195480000	158470000	83517000	55570000	27947000	117910000	62712000	55200000	65855000	35360000	30495000	86667000	41840000	44827000	41853	2516	39401	255707;255708;255709;255710	343004	343004			1	
QMFAQMYQK	1	Unmodified	1173.5311	0.53108569	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.49		6	2						4	3	4	3	2	45.248	42.423	2	1.589E-11	36334	160511_QHF_FH_JSI11i_2	163.67	153.2			1.4444	1.4508	56.225	9	2	Median	1.4872	1.2771	68.712	3	2	Median	1.4899	1.7916	17.447	2	0	Median	1.4444	1.4508	59.605	3	0	Median	0.74586	0.81526	NaN	1	0	Median	863070000	385690000	477380000	204330000	80591000	123740000	223850000	85384000	138470000	246310000	123400000	122900000	188570000	96308000	92260000	41854	1170	39402	255711;255712;255713;255714;255715;255716;255717;255718;255719;255720;255721;255722	343005;343006;343007;343008;343009;343010;343011;343012;343013;343014;343015;343016;343017;343018;343019;343020;343021	343014			17	
QMFFVISLDPPIK	1	Unmodified	1533.8265	0.82652266	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		2							8	1	3	3	3	95.961	89.554	2;3	1.659E-16	48282	160513_QHF_FH_JSI11Kac_6	139.86	128.33			0.91921	0.88926	17.739	10	2	Median	0.99541	0.86041	NaN	1	0	Median	0.74429	0.87706	11.642	3	2	Plateau	0.90053	0.84187	9.6433	3	0	Median	1.0805	1.1334	25.715	3	0	Median	1187900000	640740000	547190000	38149000	20027000	18123000	452770000	266990000	185780000	401690000	211610000	190070000	295330000	142110000	153220000	41855	2277	39403	255723;255724;255725;255726;255727;255728;255729;255730;255731;255732	343022;343023;343024;343025;343026;343027;343028;343029;343030;343031;343032;343033	343022			11	
QMFFVISLDPPIK	1	Oxidation (M)	1549.8214	0.82143728	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	90.974	81.532	2	0.0057997	43909	160513_QHF_FH_JSI12Kac_6	77.597	53.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41856	2277	39403	255733	343034	343034		1876	1	
QMFGNADMNTFPTFK	1	Unmodified	1747.7698	0.76981241	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.73	4	7	4							3	5	4	3	81.516	80.911	2;3	6.0778E-98	71957	160511_QHF_FH_JSI10i_2	267.43	240.65			0.96419	1.0037	17.261	15	2	Median	1.1184	0.95677	6.2755	3	0	Plateau	0.84279	1.0234	17.854	5	0	Median	0.95082	0.97355	23.705	4	1	Median	0.908	1.0037	22.094	3	1	Median	2600200000	1268000000	1332200000	361890000	166800000	195080000	650960000	348540000	302420000	1073100000	501050000	572070000	514220000	251640000	262580000	41857	1149	39404	255734;255735;255736;255737;255738;255739;255740;255741;255742;255743;255744;255745;255746;255747;255748	343035;343036;343037;343038;343039;343040;343041;343042;343043;343044;343045;343046;343047;343048;343049;343050;343051;343052;343053;343054;343055;343056;343057;343058;343059	343054			24	
QMFGNADMNTFPTFK	1	Oxidation (M)	1763.7647	0.76472704	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.879	70.993	2	5.4898E-21	62138	160511_QHF_FH_JSI11i_2	170.04	152.23			1.0888	1.1362	7.8167	4	0	Median	1.2179	1.0684	NaN	1	0	Median	1.064	1.2811	NaN	1	0	Median	1.1041	1.1112	NaN	1	0	Median	1.0737	1.1619	NaN	1	0	Median	201470000	99358000	102110000	31304000	11263000	20041000	56758000	31188000	25569000	69108000	35695000	33413000	44297000	21212000	23085000	41858	1149	39404	255749;255750;255751;255752	343060;343061;343062;343063;343064;343065	343062		785	6	
QMFHIITGPNMGGK	1	Unmodified	1529.7483	0.74828911	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	3	1	2	2	59.541	56.965	2;3	5.7245E-07	48948	160511_QHF_FH_JSI12i_3	122.51	101.21			0.91431	0.8672	9.5416	8	0	Median	1.1005	0.87522	1.3748	3	0	Plateau	0.85094	1.0183	NaN	1	0	Median	0.88936	0.84263	15.523	2	0	Median	0.7691	0.80298	0.3301	2	0	Median	1629200000	808000000	821190000	511560000	223870000	287680000	42942000	18391000	24552000	510270000	257170000	253090000	564430000	308560000	255860000	41859	1557	39405	255753;255754;255755;255756;255757;255758;255759;255760	343066;343067;343068;343069;343070;343071;343072;343073;343074;343075;343076;343077;343078	343075			13	
QMFHIITGPNMGGK	1	Oxidation (M)	1545.7432	0.74320373	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	1	0	By MS/MS				3	0			2							2				48.332	46.723	2	0.016905	38264	160511_QHF_FH_JSI9i_3	51.092	24.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41860	1557	39405	255761;255762	343079;343080	343079		1227	2	
QMFLATWK	1	Unmodified	1023.5212	0.52117293	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.88		4						1	3	3	1	2	2	70.076	64.887	2	4.5515E-16	34988	160513_QHF_FH_JSI11Kac_6	163.9	145.17			1.1367	1.0476	12.224	8	0	Median	1.2635	1.0653	9.9841	3	0	Plateau	0.78588	0.97767	NaN	1	0	Median	1.1367	1.0888	4.0175	2	0	Median	1.0952	1.1908	19.564	2	0	Median	700660000	316720000	383940000	162810000	71227000	91582000	102890000	56259000	46627000	290220000	125710000	164510000	144750000	63523000	81225000	41861	2296	39406	255763;255764;255765;255766;255767;255768;255769;255770	343081;343082;343083;343084;343085;343086;343087;343088;343089	343083			9	
QMFLTQTDTGDDR	0	Unmodified	1526.6671	0.66712148	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.058	42.401	2	4.1179E-67	38106	160511_QHF_FH_JSI10i_1	237.37	218.13			0.86733	0.90247	30.302	4	1	Median	1.9723	1.6165	NaN	1	1	Median	0.75009	0.88969	NaN	1	0	Median	0.91883	0.91544	NaN	1	0	Median	0.81871	0.84975	NaN	1	0	Median	446660000	237040000	209620000	70240000	22559000	47681000	133220000	79270000	53950000	132690000	75777000	56910000	110510000	59432000	51082000	41862	2094	39407	255771;255772;255773;255774;255775	343090;343091;343092;343093;343094;343095;343096;343097	343095			8	
QMFQLHIGNVYEAGK	1	Unmodified	1733.8559	0.85592531	3271	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	68.813	68.664	3	0.00046563	59363	160511_QHF_FH_JSI12i_3	45.438	39.534			1.1652	1.1267	16.737	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0995	1.0009	NaN	1	0	Median	1.235	1.2682	NaN	1	0	Median	73656000	35423000	38233000	0	0	0	0	0	0	32421000	17940000	14481000	41234000	17483000	23751000	41863	3271	39408	255776;255777	343098;343099	343099			2	
QMGQPCDAYQK	1	Unmodified	1324.554	0.55400598	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	19.017	18.648	2	1.7506E-06	16130	160511_QHF_FH_JSI12i_1	118.71	92.773			1.0297	1.1405	23.666	2	2	Median	NaN	NaN	NaN	0	0	Median	0.81021	0.96472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3087	1.3482	NaN	1	1	Median	125850000	56956000	68890000	0	0	0	55091000	30441000	24650000	0	0	0	70756000	26516000	44240000	41864	1085	39409	255778;255779	343100;343101	343100			2	
QMGYQCFVSFFDLRDPSQIDNNEPYMK	1	Unmodified	3328.4628	0.46275472	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			92.185	86.464	3	1.0284E-98	49464	160513_QHF_FH_JSI10Kac_6	218.61	206.69			0.77919	0.93533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77919	0.93533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94568000	41203000	53366000	0	0	0	94568000	41203000	53366000	0	0	0	0	0	0	41865	2391	39410	255780	343102;343103	343103			2	
QMHSIIEK	1	Unmodified	984.50625	0.50625115	5857				yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	36.349	36.276	3	0.035029	31746	160511_QHF_FH_JSI11i_3	23.429	9.6589	+		1.5499	1.574	13.663	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2987	1.2423	0	2	0	Median	1.5499	1.574	0	2	0	Median	128150000	55439000	72715000	0	0	0	0	0	0	59815000	27414000	32400000	68339000	28024000	40314000	41866	5857	39411	255781;255782;255783;255784	343104;343105	343104			2	
QMHWPPG	0	Unmodified	851.37484	0.37484305	1683	P49773	HINT1	Histidine triad nucleotide-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	3	2	3	38.421	37.425	2	0.011095	31921	160511_QHF_FH_JSI12i_2	71.995	71.995			0.92526	0.99806	4.8933	10	3	Median	1.1617	0.98979	5.3247	2	0	Median	0.79797	0.9882	2.928	3	2	Median	0.96322	0.97397	6.5141	2	1	Median	0.97196	1.0896	6.4854	3	0	Plateau	817740000	434140000	383610000	110540000	57937000	52605000	248930000	138280000	110650000	229620000	115340000	114280000	228650000	122580000	106080000	41867	1683	39412	255785;255786;255787;255788;255789;255790;255791;255792;255793;255794;255795	343106;343107;343108;343109;343110;343111;343112;343113;343114;343115;343116;343117;343118;343119;343120;343121;343122;343123;343124;343125	343108			20	
QMIAVADENQNHHLEPEEVLK	1	Unmodified	2443.1802	0.18017257	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							1	4	3	3	57.24	56.564	3;4	1.4073E-22	49087	160511_QHF_FH_JSI11i_2	153.11	129.38			1.0167	1.0623	22.438	11	4	Median	0.96934	0.82497	NaN	1	0	Median	0.70159	0.85926	23.408	4	2	Median	1.1213	1.0623	18.667	3	2	Median	1.2152	1.2488	12.712	3	0	Median	667750000	330160000	337580000	82406000	41637000	40769000	210090000	119310000	90786000	176970000	75192000	101780000	198280000	94026000	104250000	41868	4374	39413	255796;255797;255798;255799;255800;255801;255802;255803;255804;255805;255806	343126;343127;343128;343129;343130;343131;343132;343133;343134;343135;343136	343130			9	
QMIGYNLATK	1	Unmodified	1137.5852	0.58522975	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.691	46.178	2	2.0054E-09	39764	160511_QHF_FH_JSI11i_2	131.22	92.903			0.66349	0.68031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66349	0.68031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94487000	58437000	36050000	0	0	0	0	0	0	94487000	58437000	36050000	0	0	0	41869	4122	39414	255807	343137;343138	343138			2	
QMLDDFGPHR	0	Unmodified	1214.5502	0.55024123	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	37.51	36.804	2;3	6.1127E-10	32072	160511_QHF_FH_JSI11i_3	118.03	110.15			0.83732	0.85557	25.22	11	1	Linear	1.4566	1.2308	26.872	2	0	Median	1.0659	1.3011	43.224	2	0	Median	1.1329	1.0604	26.796	4	1	Median	1.2024	1.2027	22.619	3	0	Median	779430000	374400000	405030000	101470000	42401000	59064000	150750000	77706000	73047000	324540000	151060000	173480000	202670000	103240000	99434000	41870	843	39415	255808;255809;255810;255811;255812;255813;255814;255815;255816;255817;255818;255819;255820	343139;343140;343141;343142;343143;343144;343145;343146;343147;343148;343149;343150;343151;343152	343140			14	
QMLDPANYGTGMER	0	Unmodified	1581.6916	0.69156209	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.14	0.35	6	1								3	2	2		52.484	52.074	2	2.8132E-07	46273	160511_QHF_FH_JSI9i_1	91.936	84.556			0.74255	0.84148	48.087	3	2	Median	NaN	NaN	NaN	0	0	Median	0.62517	0.70826	24.375	2	2	Median	1.6147	1.5413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101400000	54866000	46538000	0	0	0	54637000	34778000	19859000	46768000	20088000	26680000	0	0	0	41871	1576	39416	255821;255822;255823;255824;255825;255826;255827	343153;343154;343155;343156;343157;343158;343159;343160	343159			8	
QMLEALNFLHSK	1	Unmodified	1429.7388	0.73877028	607	O94804	STK10	Serine/threonine-protein kinase 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	75.759	75.475	3	0.00018028	65295	160511_QHF_FH_JSI12i_3	71.548	43.221			1.9928	1.9934	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9928	1.9934	NaN	1	1	Median	42281000	13391000	28890000	0	0	0	0	0	0	0	0	0	42281000	13391000	28890000	41872	607	39417	255828;255829;255830	343161;343162;343163	343163			3	
QMLESNK	1	Unmodified	848.4062	0.40620276	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			9.4413	8.9418	2	0.048426	6908	160511_QHF_FH_JSI10i_2	43.214	2.6413			0.36857	0.44842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36857	0.44842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37554000	28495000	9058800	0	0	0	37554000	28495000	9058800	0	0	0	0	0	0	41873	107	39418	255831	343164	343164			1	
QMLLFLK	1	Unmodified	891.5252	0.52519568	4038	Q96E29	MTERF3	Transcription termination factor 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3		1	2	1	78.81	73.382	2	0.0066635	39029	160513_QHF_FH_JSI11Kac_6	74.439	45.1			0.4881	0.57949	21.716	3	1	Median	NaN	NaN	NaN	0	0	Median	0.4881	0.57949	NaN	1	0	Median	0.75342	0.73527	NaN	1	1	Median	0.45127	0.47657	NaN	1	0	Median	54863000	32607000	22257000	0	0	0	18037000	12411000	5625700	23579000	13057000	10522000	13248000	7138900	6108600	41874	4038	39419	255832;255833;255834;255835	343165;343166;343167;343168	343167			4	
QMLLFTHIR	0	Unmodified	1157.6379	0.63793403	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		2	4						8	4	4	3	3	65.022	58.645	2;3	2.8548E-24	30868	160513_QHF_FH_JSI12Kac_6	155.84	99.586			1.0358	1.0496	28.527	12	1	Median	1.1875	1.0303	28.732	3	0	Median	0.83635	0.99575	17.465	4	0	Median	1.1983	1.1337	17.129	2	0	Median	1.0068	1.0692	50.374	3	1	Median	1759000000	875300000	883680000	384290000	166280000	218010000	791420000	445070000	346350000	417520000	175600000	241920000	165750000	88346000	77402000	41875	3290	39420	255836;255837;255838;255839;255840;255841;255842;255843;255844;255845;255846;255847;255848;255849	343169;343170;343171;343172;343173;343174;343175;343176;343177;343178;343179;343180;343181;343182;343183;343184;343185;343186;343187;343188;343189;343190	343186			22	
QMLLFTHIR	0	Oxidation (M)	1173.6328	0.63284865	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	56.054	46.398	2;3	0.0026842	24236	160513_QHF_FH_JSI12Kac_6	52.79	41.625			1.1441	1.1393	3.5681	4	1	Median	1.3051	1.1325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1406	1.0971	NaN	1	0	Median	1.1176	1.1707	3.0099	2	0	Median	99397000	45313000	54084000	10299000	4467500	5831900	0	0	0	46596000	20276000	26320000	42502000	20570000	21931000	41876	3290	39420	255850;255851;255852;255853	343191;343192;343193;343194;343195;343196	343194		2240	6	
QMLTAAHALAVDAK	1	Unmodified	1438.7602	0.76023401	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.745	45.241	3	0.014477	38906	160511_QHF_FH_JSI11i_2	42.072	31.427			1.7285	1.7907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7285	1.7907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35653000	14652000	21000000	0	0	0	0	0	0	35653000	14652000	21000000	0	0	0	41877	2229	39421	255854	343197	343197			1	
QMMEAATR	0	Unmodified	936.41572	0.41572158	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	12.396	11.925	2	0.025833	9294	160511_QHF_FH_JSI12i_2	42.599	23.036			1.1606	1.1923	12.527	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1069	1.0912	NaN	1	0	Median	1.2169	1.3027	NaN	1	0	Median	91929000	40523000	51406000	0	0	0	0	0	0	50152000	22502000	27651000	41777000	18022000	23755000	41878	327	39422	255855;255856	343198	343198			1	
QMNDEKTAADYK	2	Acetyl (K)	1454.6348	0.63475872	2718	Q15843	NEDD8	NEDD8	yes	yes	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		32.386	23.757	2	2.0127E-24	14313	160513_QHF_FH_JSI11Kac_3	172.92	163.27			0.58558	0.62841	56.136	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78964	0.93461	NaN	1	0	Median	0.43425	0.42252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9186200	5857700	3328500	0	0	0	2471900	1386300	1085600	6714200	4471400	2242900	0	0	0	41879	2718	39423	255857;255858	343199	343199	2646		1	
QMNDEKTAADYK	2	Acetyl (K);Oxidation (M)	1470.6297	0.62967334	2718	Q15843	NEDD8	NEDD8	yes	yes	1	0	1	1				By MS/MS	12	0					1								1	23.813	16.764	2	0.058156	8567	160513_QHF_FH_JSI12Kac_2	33.229	26.101			0.86274	0.92994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86274	0.92994	NaN	1	0	Median	2281800	1128200	1153600	0	0	0	0	0	0	0	0	0	2281800	1128200	1153600	41880	2718	39423	255859	343200	343200	2646	2107	1	
QMNIPGGDR	0	Unmodified	986.46036	0.46036359	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	23.184	22.563	2	2.3118E-05	19286	160511_QHF_FH_JSI9i_2	105.57	94.499			0.91197	0.8666	17.775	7	0	Median	0.89947	0.76321	9.1477	2	0	Median	0.79769	0.95838	14.237	2	0	Median	0.82652	0.82823	30.374	2	0	Median	0.92603	0.96775	NaN	1	0	Median	711510000	381050000	330460000	169440000	85170000	84268000	202590000	114500000	88092000	192040000	104830000	87212000	147440000	76553000	70888000	41881	5280	39424	255860;255861;255862;255863;255864;255865;255866	343201;343202;343203;343204;343205;343206;343207;343208	343205			8	
QMNMSPPPGNAGPVIMSIEEK	1	Unmodified	2226.0483	0.048295461	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		79.561	78.861	3	0.0088516	69338	160511_QHF_FH_JSI11i_2	35.703	26.771			1.6528	1.4234	NaN	1	1	Median	1.6528	1.4234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11600000	4341000	7258800	11600000	4341000	7258800	0	0	0	0	0	0	0	0	0	41882	3315	39425	255867;255868	343209;343210	343210			2	
QMNPFIEDILNR	0	Unmodified	1488.7395	0.73949856	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	3	3	94.461	94.132	2;3	1.3845E-07	82772	160511_QHF_FH_JSI11i_2	135.43	74.992			1.0378	1.0356	14.624	7	4	Median	1.2017	1.0529	NaN	1	0	Median	0.96858	1.1768	23.032	2	1	Median	1.0378	1.0849	13.33	3	2	Plateau	0.94521	1.0356	NaN	1	1	Median	276860000	143790000	133070000	33384000	15586000	17798000	69082000	42649000	26433000	111800000	53679000	58119000	62600000	31876000	30724000	41883	344	39426	255869;255870;255871;255872;255873;255874;255875;255876;255877	343211;343212;343213;343214;343215;343216;343217;343218;343219;343220;343221;343222	343215			12	
QMNPHIR	0	Unmodified	894.4494	0.44940497	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	2	3	9.5666	9.2659	2;3	0.00096073	6840	160511_QHF_FH_JSI11i_3	126.16	109.23			1.0015	1.0159	43.71	9	0	Median	1.4876	1.2541	24.779	2	0	Median	0.50339	0.58783	91.919	2	0	Median	1.0704	1.0285	1.7471	2	0	Median	0.88818	0.92199	4.2269	3	0	Median	3146700000	1441600000	1705100000	305190000	108340000	196850000	541350000	313460000	227890000	809820000	321820000	488010000	1490400000	698030000	792330000	41884	1208	39427	255878;255879;255880;255881;255882;255883;255884;255885;255886	343223;343224;343225;343226;343227;343228;343229;343230;343231	343223			9	
QMNPHIR	0	Oxidation (M)	910.44432	0.4443196	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	7.8601	7.9245	3	0.017902	2984	160511_QHF_FH_JSI12i_3	40.103	30.515			0.92455	0.85572	14.24	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92455	0.85572	NaN	1	0	Median	0.82667	0.82393	19.899	2	0	Median	356500000	160390000	196120000	0	0	0	0	0	0	86664000	35464000	51199000	269840000	124920000	144920000	41885	1208	39427	255887;255888;255889	343232;343233	343232		839	2	
QMNQTLQDK	1	Unmodified	1104.5234	0.52335778	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.328	12.064	2	0.00095644	9300	160511_QHF_FH_JSI9i_1	76.17	44.941			0.62877	0.63502	4.3582	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64358	0.61575	NaN	1	1	Median	0.6143	0.65489	NaN	1	1	Median	418740000	325310000	93427000	0	0	0	0	0	0	72831000	48678000	24153000	345900000	276630000	69274000	41886	2574	39428	255890;255891;255892;255893	343234;343235;343236;343237	343237			4	
QMPDVNVSWDGEGPK	1	Unmodified	1657.7406	0.74062078	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	65.185	64.693	2	0.0091309	58882	160511_QHF_FH_JSI12i_1	80.469	56.379			0.57462	0.6438	4.5871	2	0	Median	NaN	NaN	NaN	0	0	Median	0.52628	0.62325	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6274	0.66502	NaN	1	0	Median	122070000	76395000	45677000	0	0	0	62178000	40484000	21694000	0	0	0	59894000	35911000	23983000	41887	122	39429	255894;255895	343238	343238			0	
QMPEPEQLK	1	Unmodified	1098.5379	0.53794521	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.175	34.588	2	0.029619	31299	160511_QHF_FH_JSI12i_1	48.283	35.324			1.8897	1.9436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8897	1.9436	NaN	1	1	Median	101810000	33632000	68179000	0	0	0	0	0	0	0	0	0	101810000	33632000	68179000	41888	432	39430	255896	343239	343239			1	
QMPFTEMSEENITIK	1	Unmodified	1796.8325	0.83247225	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								3	2	1	1	76.85	76.022	2	2.3571E-05	67674	160511_QHF_FH_JSI10i_2	83.617	70.417			0.9362	0.87604	24.148	4	3	Median	0.90692	0.79679	NaN	1	1	Median	1.0832	1.2796	NaN	1	1	Median	0.96643	0.96318	NaN	1	0	Median	0.67324	0.74691	NaN	1	1	Median	91673000	46727000	44946000	23497000	6432300	17065000	15916000	6821300	9095000	31725000	18889000	12836000	20534000	14584000	5950300	41889	1557	39431	255897;255898;255899;255900;255901;255902;255903	343240;343241;343242;343243;343244;343245;343246;343247;343248	343248			9	
QMPSESLDPAFSPR	0	Unmodified	1560.7242	0.72424243	2602	Q15018	FAM175B	BRISC complex subunit Abro1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	59.905	59.188	2	0.014112	53880	160511_QHF_FH_JSI12i_1	53.967	40.304			1.0573	0.87606	19.961	3	0	Median	1.0776	0.87606	NaN	1	0	Median	0.63021	0.74024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.1018	NaN	1	0	Median	109940000	52123000	57814000	35175000	15805000	19370000	36151000	19604000	16547000	0	0	0	38611000	16714000	21897000	41890	2602	39432	255904;255905;255906	343249	343249			1	
QMQLENVSVALEFLDRESIK	1	Oxidation (M)	2364.1995	0.19951103	1192;512	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	1	1			By MS/MS		3	0			1									1		100.23	100.23	3	0.05271	89252	160511_QHF_FH_JSI11i_3	30.094	20.811			0.92932	0.86388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92932	0.86388	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31504000	15130000	16374000	0	0	0	0	0	0	31504000	15130000	16374000	0	0	0	41891	1192;512	39433	255907	343250	343250			1	
QMQLENVSVALEFLDRESIK	1	Unmodified	2348.2046	0.20459641	1192;512	P21333;O75369	FLNA;FLNB	Filamin-A;Filamin-B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		101.35	101.26	3	7.9568E-139	89066	160511_QHF_FH_JSI9i_2	286	259.04			0.68883	0.65956	21.822	4	2	Median	0.68528	0.57347	NaN	1	0	Median	0.69241	0.85434	NaN	1	0	Median	0.63031	0.64181	23.639	2	2	Median	NaN	NaN	NaN	0	0	Median	1184300000	697740000	486600000	383330000	238190000	145140000	437110000	243950000	193160000	363900000	215600000	148300000	0	0	0	41892	1192;512	39433	255908;255909;255910;255911	343251;343252;343253;343254;343255	343251			5	
QMQNTGESEASGNK	1	Unmodified	1479.626	0.62598495	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.39	7.0542	2	3.4384E-30	4710	160511_QHF_FH_JSI11i_1	193.73	143.45			0.91365	0.80524	62.555	4	1	Median	0.84095	0.69005	NaN	1	0	Median	0.54587	0.64917	NaN	1	0	Median	0.99263	0.93966	NaN	1	0	Median	2.3443	2.5094	NaN	1	1	Median	233650000	110210000	123440000	70479000	33623000	36856000	53628000	32028000	21600000	65307000	30152000	35154000	44234000	14402000	29832000	41893	213	39434	255912;255913;255914;255915	343256;343257;343258;343259	343256			4	
QMQSSFTSSEQELER	0	Unmodified	1785.7839	0.78394215	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	3	1	2	42.546	41.829	2	1.3327E-81	37617	160511_QHF_FH_JSI10i_1	252.42	242.37			0.98485	1.0548	16.347	5	1	Median	1.313	1.0763	NaN	1	0	Median	0.75844	0.91879	19.525	2	1	Median	0.98485	0.95927	NaN	1	0	Median	1.1802	1.2468	NaN	1	0	Median	451040000	243200000	207840000	70276000	34556000	35720000	117100000	66097000	51004000	169900000	93230000	76666000	93767000	49315000	44453000	41894	3328	39435	255916;255917;255918;255919;255920;255921;255922;255923	343260;343261;343262;343263;343264;343265;343266;343267;343268;343269;343270;343271;343272	343267			13	
QMQVLHPAAR	0	Oxidation (M)	1165.6026	0.60261115	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.9	0.3		1	9								5	3	2	18.707	18.25	2;3	0.00012435	16163	160511_QHF_FH_JSI11i_3	74.267	69.378			1.2527	1.3478	49.519	9	2	Median	NaN	NaN	NaN	0	0	Median	1.4315	1.6426	21.071	4	2	Median	1.2527	1.19	59.57	3	0	Median	0.79789	0.80608	62.376	2	0	Median	672310000	315900000	356410000	0	0	0	181180000	80084000	101090000	235490000	95647000	139840000	255650000	140170000	115470000	41895	1722	39436	255924;255925;255926;255927;255928;255929;255930;255931;255932;255933	343273;343274;343275;343276;343277;343278;343279;343280;343281	343274		1407	7	
QMQVLHPAAR	0	Unmodified	1149.6077	0.60769653	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.59		12	13						7	8	11	7	6	21.917	19.248	2;3	2.4645E-25	16490	160511_QHF_FH_JSI10i_2	183.9	148.41			0.89161	0.98528	51.911	24	9	Median	1.2852	1.0755	45.508	4	1	Median	0.75113	0.89709	66.381	9	4	Median	0.55405	0.52813	41.759	6	3	Plateau	0.98167	0.98532	35.993	5	1	Median	6124300000	3174500000	2949800000	1173700000	557230000	616440000	2292200000	1107400000	1184800000	1241600000	755100000	486450000	1416900000	754700000	662170000	41896	1722	39436	255934;255935;255936;255937;255938;255939;255940;255941;255942;255943;255944;255945;255946;255947;255948;255949;255950;255951;255952;255953;255954;255955;255956;255957;255958;255959;255960;255961;255962;255963;255964;255965	343282;343283;343284;343285;343286;343287;343288;343289;343290;343291;343292;343293;343294;343295;343296;343297;343298;343299;343300;343301;343302;343303;343304;343305;343306;343307;343308;343309;343310;343311;343312;343313;343314;343315;343316;343317;343318;343319;343320;343321	343305			40	
QMQVLLAQVQNSEQLLR	0	Unmodified	1997.0728	0.072794373	4735	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	95.075	94.405	3	0.042005	81388	160511_QHF_FH_JSI12i_2	28.627	25.482			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4146700	4146700	0	0	0	0	0	0	0	0	0	0	4146700	4146700	0	41897	4735	39437	255966	343322	343322			1	
QMREEDQEEAAK	1	Unmodified	1462.6358	0.63582135	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		7								2	2	1	2	7.4435	6.9881	2;3	1.5563E-07	4763	160511_QHF_FH_JSI12i_2	110.66	91.267			0.91321	0.89298	25.235	7	1	Median	0.91194	0.76989	20.976	2	1	Median	0.9611	1.1726	6.0155	2	0	Median	0.87674	0.87013	NaN	1	0	Median	0.74342	0.8125	35.172	2	0	Median	278730000	149420000	129310000	74271000	34004000	40267000	80021000	44008000	36013000	54243000	31320000	22923000	70198000	40087000	30110000	41898	2617	39438	255967;255968;255969;255970;255971;255972;255973	343323;343324;343325;343326;343327;343328;343329	343323			7	
QMSGAQIK	1	Unmodified	861.43784	0.43783723	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.24	6	4	3				1			3	3	4	4	11.58	10.589	2	0.00010161	8392	160511_QHF_FH_JSI11i_1	113.5	47.827			0.94104	0.86614	69.152	13	5	Median	0.94104	0.77918	63.143	3	1	Median	1.2211	1.4872	34.85	3	0	Plateau	0.85648	0.86614	55.62	3	1	Median	0.7645	0.83932	113.27	4	3	Median	15957000000	7268900000	8687700000	2973000000	1345600000	1627400000	4021900000	2227200000	1794800000	3661900000	1356300000	2305600000	5299900000	2339900000	2959900000	41899	2656;1893;2657	39439	255974;255975;255976;255977;255978;255979;255980;255981;255982;255983;255984;255985;255986;255987	343330;343331;343332;343333;343334;343335;343336;343337;343338;343339;343340;343341;343342;343343;343344;343345	343331			16	
QMSGAQIK	1	Oxidation (M)	877.43275	0.43275186	2656;2657;1893	Q15365;P57721;Q15366	PCBP1;PCBP3;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.32	4	3				3				2	3	3	2	9.4117	6.3692	2	0.0038286	2227	160513_QHF_FH_JSI12Kac_3	80.229	40.566			0.94444	1.0366	38.013	8	1	Median	1.805	1.5035	33.981	2	0	Median	0.66233	0.7847	53.726	2	1	Median	0.90093	0.90925	22.257	2	0	Median	0.78632	0.86316	22.181	2	0	Median	1782100000	909420000	872660000	585750000	256460000	329290000	492830000	280700000	212140000	418090000	207490000	210600000	285410000	164780000	120630000	41900	2656;1893;2657	39439	255988;255989;255990;255991;255992;255993;255994;255995;255996;255997	343346;343347;343348;343349;343350;343351;343352;343353;343354	343353		1563	9	
QMSLLLR	0	Unmodified	859.49496	0.49495818	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.28		4	5				2	2	3	3	5	5	3	56.971	51.768	2	0.0016788	43084	160511_QHF_FH_JSI10i_3	117.93	50.94			0.99455	1.0513	13.218	15	2	Median	1.4575	1.2585	21.024	3	0	Median	0.88165	1.0135	9.811	5	0	Median	1.0619	1.0413	12.099	4	1	Median	0.97951	1.0609	13.51	3	1	Median	5765400000	2796100000	2969300000	955060000	423260000	531800000	1316000000	687200000	628810000	1659900000	827830000	832030000	1834500000	857770000	976690000	41901	1263	39440	255998;255999;256000;256001;256002;256003;256004;256005;256006;256007;256008;256009;256010;256011;256012;256013	343355;343356;343357;343358;343359;343360;343361;343362;343363;343364;343365;343366;343367;343368	343359			14	
QMSLLLR	0	Oxidation (M)	875.48987	0.48987281	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By matching		15.7	0.471								1	2	2		1		42.096	32.512	2	0.038595	17894	160513_QHF_FH_JSI9Kac_5	52.716	22.531			1.3972	1.1837	11.775	3	0	Plateau	1.3982	1.1769	0.81366	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9697	0.95998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17126000	7681700	9444200	12191000	5136300	7055200	0	0	0	4934500	2545500	2389000	0	0	0	41902	1263	39440	256014;256015;256016	343369;343370	343369			2	
QMSSFVQNGSTFVK	1	Unmodified	1558.745	0.74497787	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	2	2	57.282	56.258	2	3.4531E-06	49640	160511_QHF_FH_JSI10i_2	130.56	74.995			0.88512	1.0438	7.1865	4	3	Median	NaN	NaN	NaN	0	0	Median	0.8311	1.0263	NaN	1	1	Median	1.1178	1.1062	NaN	1	0	Median	0.88317	0.99604	9.0223	2	2	Median	142370000	73358000	69013000	0	0	0	29186000	14432000	14753000	42466000	20945000	21520000	70719000	37980000	32739000	41903	1435	39441	256017;256018;256019;256020;256021	343371;343372;343373;343374;343375;343376	343376			6	
QMTDPNVALTFLEK	1	Unmodified	1605.8072	0.80724378	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.634	7	5	1							3	3	4	3	88.853	88.36	2;3	2.9014E-07	80421	160511_QHF_FH_JSI12i_1	139.78	123.89			0.88046	0.93883	24.524	12	4	Median	0.93592	0.7835	24.227	2	1	Median	0.67461	0.80297	15.939	3	0	Plateau	0.97099	0.96403	36.559	4	3	Median	0.86723	0.90381	5.4958	3	0	Plateau	827190000	451340000	375850000	131870000	68363000	63506000	236960000	144190000	92771000	295620000	154150000	141470000	162740000	84638000	78104000	41904	5441	39442	256022;256023;256024;256025;256026;256027;256028;256029;256030;256031;256032;256033;256034	343377;343378;343379;343380;343381;343382;343383;343384;343385;343386;343387;343388;343389;343390;343391;343392;343393;343394;343395;343396;343397	343384			21	
QMTDVLLTPATDALK	1	Unmodified	1615.8491	0.84910859	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	80.766	80.296	2;3	2.0647E-07	71220	160511_QHF_FH_JSI9i_1	133.71	125.2			1.0699	1.0476	43.36	8	3	Median	0.89765	0.74822	37.867	2	1	Median	0.79844	0.9322	40.118	2	1	Median	1.7042	1.6561	55.044	2	0	Median	0.94853	0.99357	17.623	2	1	Median	600640000	310860000	289780000	161680000	93970000	67707000	158460000	93895000	64567000	110590000	39589000	71000000	169910000	83411000	86503000	41905	3503	39443	256035;256036;256037;256038;256039;256040;256041;256042	343398;343399;343400;343401;343402;343403;343404;343405;343406;343407;343408;343409;343410;343411	343411			14	
QMTEAIGPSTIR	0	Unmodified	1302.6602	0.66018561	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.51	41.134	2	0.00054177	35280	160511_QHF_FH_JSI11i_2	72.289	53.544			0.71841	0.81434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71841	0.81434	NaN	1	1	Median	64814000	35293000	29522000	0	0	0	0	0	0	0	0	0	64814000	35293000	29522000	41906	2573	39444	256043;256044	343412;343413	343413			2	
QMTYSLTR	0	Unmodified	998.48552	0.48551571	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			30.636	29.648	2	0.0045929	26011	160511_QHF_FH_JSI10i_2	68.224	49.448			1.0971	1.1166	11.372	2	0	Median	1.1891	1.0303	NaN	1	0	Median	1.0122	1.2101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108990000	55391000	53604000	45389000	21744000	23645000	63606000	33647000	29959000	0	0	0	0	0	0	41907	5262	39445	256045;256046	343414;343415	343415			2	
QMVEHGGFYR	0	Unmodified	1222.5553	0.55532661	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.4	0.49		3	2							1	1	1	2	22.273	21.727	2;3	3.7504E-06	17612	160511_QHF_FH_JSI12i_3	87.298	84.953			0.97443	0.9719	13.259	4	0	Median	1.4673	1.2383	NaN	1	0	Median	0.74719	0.92094	NaN	1	0	Median	0.98498	0.97616	NaN	1	0	Median	0.96398	0.96765	NaN	1	0	Median	242590000	133570000	109010000	35491000	12916000	22575000	71541000	44965000	26576000	32867000	18030000	14837000	102690000	57663000	45024000	41908	2517	39446	256047;256048;256049;256050;256051	343416;343417;343418	343417			3	
QMVEILHK	1	Unmodified	996.54264	0.54263666	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		12	3							3	4	5	3	33.653	32.918	2;3	6.3272E-06	28630	160511_QHF_FH_JSI11i_3	123.98	97.381			1.2794	1.2793	66.047	13	10	Median	1.0501	0.89476	60.108	3	2	Median	0.91128	1.1159	79.436	4	4	Median	1.3721	1.3705	50.366	4	3	Median	1.2993	1.3605	118.54	2	1	Median	2020300000	1022600000	997680000	384320000	208770000	175550000	607280000	318870000	288410000	751830000	375980000	375840000	276880000	119010000	157870000	41909	595	39447	256052;256053;256054;256055;256056;256057;256058;256059;256060;256061;256062;256063;256064;256065;256066	343419;343420;343421;343422;343423;343424;343425;343426;343427;343428;343429;343430;343431;343432;343433;343434;343435;343436;343437	343421			19	
QMVETELK	1	Unmodified	976.48993	0.48993238	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	4.82	4	5					2			3	3	3	2	28.683	26.338	2	4.2959E-16	16271	160513_QHF_FH_JSI11Kac_4	164.53	105.62			0.80162	0.94457	39.893	11	0	Median	1.1516	0.96517	84.861	3	0	Median	0.75964	0.91008	4.5322	3	0	Median	1.0352	1.0274	21.581	3	0	Median	0.85049	0.93074	15.437	2	0	Median	11647000000	5217200000	6430000000	3391600000	1263300000	2128300000	3240900000	1471200000	1769800000	2153300000	1227900000	925450000	2861400000	1254800000	1606600000	41910	1990	39448	256067;256068;256069;256070;256071;256072;256073;256074;256075;256076;256077	343438;343439;343440;343441;343442;343443;343444;343445;343446;343447;343448;343449;343450;343451;343452;343453;343454;343455	343447			18	
QMVETELK	1	Oxidation (M)	992.48485	0.48484701	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.85	7	1				2	2			4	3	3	2	22.711	19.258	2	0.0040231	22711	160511_QHF_FH_JSI9i_1	78.334	46.4			0.87147	1.0031	82.734	11	1	Median	1.0325	0.86922	139.54	4	1	Median	0.85649	0.99868	6.856	3	0	Median	1.0217	1.0151	3.1373	3	0	Median	0.73988	0.74952	NaN	1	0	Median	2051500000	1274600000	776850000	1249700000	829610000	420100000	576500000	327980000	248510000	41378000	20585000	20793000	183880000	96438000	87443000	41911	1990	39448	256078;256079;256080;256081;256082;256083;256084;256085;256086;256087;256088;256089	343456;343457;343458;343459;343460;343461;343462;343463;343464;343465;343466;343467	343465		1657	12	
QMVIDVLHPGK	1	Unmodified	1235.6696	0.66962808	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	5.92	3	8	10					4	4	7	7	8	7	59.762	56.243	2;3	4.5391E-23	49326	160511_QHF_FH_JSI9i_2	172.88	163.45			0.96226	1.0127	28.825	27	8	Median	1.1103	0.94963	32.876	6	1	Median	0.85055	1.0127	32.788	7	2	Median	1.0358	1.0265	18.428	8	3	Median	0.9488	1.0208	32.606	6	2	Median	8930600000	4607300000	4323300000	1526500000	743850000	782690000	2241900000	1290000000	951870000	2908500000	1557500000	1351000000	2253700000	1015900000	1237800000	41912	2025	39449	256090;256091;256092;256093;256094;256095;256096;256097;256098;256099;256100;256101;256102;256103;256104;256105;256106;256107;256108;256109;256110;256111;256112;256113;256114;256115;256116;256117;256118	343468;343469;343470;343471;343472;343473;343474;343475;343476;343477;343478;343479;343480;343481;343482;343483;343484;343485;343486;343487;343488;343489;343490;343491;343492;343493;343494;343495;343496;343497;343498;343499;343500;343501;343502;343503;343504;343505;343506;343507;343508;343509;343510;343511;343512;343513;343514;343515;343516;343517;343518;343519;343520;343521;343522;343523;343524;343525;343526;343527;343528	343502			61	
QMVIDVLHPGK	1	Oxidation (M)	1251.6645	0.66454271	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.9	6.46		4						5	1	3	2	2	3	49.893	43.233	3	0.0011305	37890	160511_QHF_FH_JSI10i_2	55.04	49.825			1.1112	1.0342	24.651	10	2	Median	1.1494	0.99622	6.3608	3	1	Median	0.95898	1.1582	20.134	2	0	Median	0.78363	0.76963	48.978	2	1	Median	1.0522	1.1868	9.605	3	0	Median	226310000	116730000	109590000	46967000	22397000	24570000	63222000	31742000	31481000	54842000	32515000	22327000	61284000	30074000	31210000	41913	2025	39449	256119;256120;256121;256122;256123;256124;256125;256126;256127;256128	343529;343530;343531;343532;343533;343534;343535;343536;343537;343538	343537		1687	9	
QMVKFAANINK	2	Acetyl (K)	1304.6911	0.69109181	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.946	53.248	2	0.0028573	28858	160513_QHF_FH_JSI11Kac_6	87.308	73.101			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41914	1064	39450	256129	343539	343539	898		1	
QMVQVSDQDMNTHLAEISR	0	Unmodified	2201.0205	0.020500806	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	58.82	57.893	3	1.1273E-18	49623	160511_QHF_FH_JSI12i_2	162.76	158.23			1.2205	1.2211	8.7756	4	0	Median	1.3222	1.122	NaN	1	0	Median	1.02	1.2474	NaN	1	0	Median	1.2068	1.1954	NaN	1	0	Median	1.2343	1.3826	NaN	1	0	Median	291320000	144470000	146850000	52199000	29352000	22847000	65949000	38756000	27193000	101150000	46342000	54807000	72021000	30020000	42001000	41915	236	39451	256130;256131;256132;256133;256134	343540;343541;343542;343543;343544;343545;343546	343541			7	
QMWAEFEWENK	1	Unmodified	1496.6395	0.63945017	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	76.174	75.301	2	4.3143E-05	66929	160511_QHF_FH_JSI10i_2	111.06	101.87			0.93566	0.95861	8.8122	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77561	0.95861	NaN	1	0	Median	0.93566	0.92824	NaN	1	0	Median	1.0052	1.096	NaN	1	0	Median	110530000	57030000	53500000	0	0	0	28561000	13520000	15041000	43660000	23506000	20153000	38310000	20004000	18306000	41916	1804	39452	256135;256136;256137	343547;343548;343549;343550;343551;343552;343553	343553			7	
QMWKSPNGTIR	1	Acetyl (K)	1358.6765	0.67650438	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.963	43.238	2	0.0034985	23438	160513_QHF_FH_JSI11Kac_6	75.294	65.341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2794900	2794900	0	0	0	0	0	0	0	2794900	2794900	0	0	0	0	41917	576	39453	256138	343554	343554	299		1	
QMYITYVR	0	Unmodified	1072.5376	0.53755128	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	55.129	45.372	2	9.7202E-05	24139	160513_QHF_FH_JSI9Kac_6	125.49	92.71			1.0348	1.0772	15.196	6	0	Median	1.5228	1.2856	24.671	2	0	Median	0.9236	1.103	3.6875	2	0	Median	1.0527	0.99813	NaN	1	0	Median	1.0173	1.0651	NaN	1	0	Median	292410000	142800000	149610000	69918000	31630000	38288000	109290000	55016000	54276000	80691000	38953000	41738000	32509000	17200000	15310000	41918	5603	39454	256139;256140;256141;256142;256143;256144	343555;343556;343557;343558;343559;343560;343561	343558			7	
QMYITYVR	0	Oxidation (M)	1088.5325	0.5324659	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	1	0		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		44.228	34.017	2	0.021695	19257	160513_QHF_FH_JSI11Kac_5	51.346	37.189			1.119	1.2071	13.274	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1279	1.3259	NaN	1	0	Median	1.1102	1.0989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7398200	3700500	3697700	0	0	0	2987500	1487100	1500400	4410700	2213400	2197300	0	0	0	41919	5603	39454	256145;256146	343562	343562			1	
QNADPQAVTMPATETK	1	Unmodified	1700.8039	0.80394931	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	35.99	35.433	2	3.2528E-41	32030	160511_QHF_FH_JSI12i_1	210.91	199.81			0.95928	1.0359	14.303	5	2	Median	1.5662	1.2837	NaN	1	0	Median	0.94075	1.0876	6.8958	2	2	Median	0.95928	0.94135	NaN	1	0	Median	0.8454	0.90426	NaN	1	0	Median	538340000	276610000	261730000	84435000	37406000	47028000	236800000	127730000	109070000	110370000	53836000	56535000	106730000	57633000	49097000	41920	5436	39455	256147;256148;256149;256150;256151	343563;343564;343565;343566;343567;343568;343569;343570	343565			8	
QNADPQAVTMPATETK	1	Oxidation (M)	1716.7989	0.79886394	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				36.62	35.388	2	0.00012005	31196	160511_QHF_FH_JSI9i_1	81.565	57.579			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41921	5436	39455	256152	343571	343571		2657	1	
QNAEELQDFMR	0	Unmodified	1379.614	0.6139637	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		55.21	54.806	2	0.0086395	49633	160511_QHF_FH_JSI11i_1	49.5	45.202			1.3796	1.459	18.343	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0949	1.2816	NaN	1	0	Median	1.7383	1.6611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35589000	14919000	20670000	0	0	0	14748000	7074800	7673300	20841000	7843900	12997000	0	0	0	41922	4753	39456	256153;256154	343572	343572			1	
QNAEKQLLVAK	2	Unmodified	1240.7139	0.71393574	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		59.503	48.648	3	0.049701	26779	160513_QHF_FH_JSI10Kac_4	23.226	0.10829			0.97432	1.0502	0.97354	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89635	1.0575	NaN	1	0	Median	1.0591	1.043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45887000	27630000	18256000	0	0	0	12966000	8181300	4784900	32920000	19449000	13471000	0	0	0	41923	2446	39457	256155;256156	343573	343573			1	
QNAELAK	1	Unmodified	772.40792	0.40791731	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	3	4.11	4	2				1				2	2	2	1	7.5948	6.2299	2	0.042889	4668	160511_QHF_FH_JSI9i_1	45.952	21.98			0.85371	0.95749	18.675	7	0	Median	1.2839	1.0788	29.351	2	0	Median	0.83961	1.0082	7.2984	2	0	Median	0.90159	0.89792	23.868	2	0	Median	0.79005	0.83255	NaN	1	0	Median	917810000	476630000	441180000	228870000	116620000	112250000	237810000	130670000	107140000	227900000	109960000	117950000	223220000	119380000	103840000	41924	5213	39458	256157;256158;256159;256160;256161;256162;256163	343574;343575	343575			2	
QNAPMTLEEFRK	1	Unmodified	1462.7238	0.7238485	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	44.79	44.551	3	2.5672E-06	38070	160511_QHF_FH_JSI12i_3	126.34	106.51			1.3293	1.3699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3293	1.3699	NaN	1	1	Median	143510000	56108000	87398000	0	0	0	0	0	0	0	0	0	143510000	56108000	87398000	41925	3838	39459	256164	343576	343576			1	
QNASFLYETVLPVVEK	1	Unmodified	1835.9669	0.96691554	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	97.72	97.418	2	0.0085208	83722	160511_QHF_FH_JSI12i_2	47.288	32.412			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41926	3469	39460	256165	343577	343577			1	
QNAVNSNQSNVVIEDFESSLTR	0	Unmodified	2450.1674	0.16735928	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		89.645	89.061	3	9.3999E-06	79331	160511_QHF_FH_JSI9i_1	66.3	51.53			0.8555	0.76079	39.514	2	2	Median	0.70635	0.57533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31093000	13012000	18081000	14431000	6398700	8032700	0	0	0	16662000	6613200	10049000	0	0	0	41927	5239	39461	256166;256167;256168	343578;343579;343580	343580			3	
QNDQVSFASLVEELK	1	Unmodified	1705.8523	0.85227972	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	100.14	100.03	2;3	0.0019482	86139	160511_QHF_FH_JSI12i_2	58.671	46.505			0.66472	0.70284	33.941	7	5	Median	1.1364	0.96819	NaN	1	0	Median	0.57085	0.6719	24.339	2	2	Median	0.87904	0.85301	40.367	2	1	Median	0.50617	0.53735	37.967	2	2	Median	81952000	52303000	29649000	7232800	3943400	3289400	29596000	20358000	9237500	22713000	12816000	9897700	22410000	15185000	7224800	41928	3328	39462	256169;256170;256171;256172;256173;256174;256175	343581;343582;343583;343584;343585;343586;343587;343588	343582			8	
QNDQVSFASLVEELKK	2	Unmodified	1833.9472	0.94724273	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	90.281	89.867	3	2.5801E-06	77915	160511_QHF_FH_JSI12i_3	117.18	106.8			0.5019	0.51571	56.151	6	6	Median	0.49976	0.42556	NaN	1	1	Median	0.43109	0.51571	25.223	2	2	Median	0.62541	0.60312	71.267	2	2	Median	1.4859	1.5126	NaN	1	1	Median	582280000	361970000	220320000	112610000	87343000	25268000	146510000	111670000	34848000	226360000	118780000	107570000	96801000	44175000	52626000	41929	3328	39463	256176;256177;256178;256179;256180;256181	343589;343590;343591;343592;343593;343594;343595;343596	343595			8	
QNEDIEPTSSR	0	Unmodified	1274.5739	0.57387302	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.135	12.712	2	0.000355	10493	160511_QHF_FH_JSI12i_1	73.887	51.307			1.1823	1.0843	13.696	4	1	Median	1.176	1.0015	NaN	1	0	Median	0.83049	0.93178	NaN	1	0	Median	1.205	1.1739	NaN	1	1	Median	1.1886	1.2521	NaN	1	0	Median	139150000	59511000	79644000	28754000	12717000	16037000	33355000	14437000	18919000	34559000	12001000	22558000	42486000	20356000	22129000	41930	5063	39464	256182;256183;256184;256185	343597;343598;343599;343600;343601;343602;343603	343599			7	
QNEELNLLK	1	Unmodified	1099.5873	0.58733824	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		46.03	45.615	2	0.00069719	41224	160511_QHF_FH_JSI11i_1	75.825	54.361			0.30968	0.33387	87.79	2	0	Median	NaN	NaN	NaN	0	0	Median	0.14985	0.17946	NaN	1	0	Median	0.63998	0.62112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145290000	101440000	43858000	0	0	0	64352000	50094000	14258000	80942000	51342000	29600000	0	0	0	41931	3328	39465	256186;256187	343604	343604			1	
QNEFSVVR	0	Unmodified	977.49304	0.49304393	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		28.483	27.835	2	0.034099	23374	160511_QHF_FH_JSI11i_2	40.778	13.524			0.93862	1.0362	5.8854	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8754	1.0803	NaN	1	0	Median	1.0064	0.994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88930000	49127000	39802000	0	0	0	46559000	28308000	18251000	42370000	20819000	21551000	0	0	0	41932	5437	39466	256188;256189	343605;343606	343605			2	
QNEINNPK	1	Unmodified	955.47231	0.47230849	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.6647	7.317	2	0.0010374	4874	160511_QHF_FH_JSI9i_1	94.874	47.431			1.2817	1.4272	28.022	4	3	Median	0.99612	0.83082	NaN	1	0	Median	1.2406	1.4883	NaN	1	1	Median	1.5154	1.4869	NaN	1	1	Median	1.3241	1.3698	NaN	1	1	Median	521070000	237490000	283580000	144000000	75659000	68342000	127600000	53966000	73634000	138680000	56456000	82221000	110790000	51405000	59386000	41933	2676	39467	256190;256191;256192;256193	343607;343608;343609;343610	343610			4	
QNENEEENLDK	1	Unmodified	1360.5743	0.57426695	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.592	10.976	2	0.00014394	8491	160511_QHF_FH_JSI9i_1	94.692	75.912			1.2156	1.1066	13.511	2	2	Median	1.462	1.2175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0108	1.0058	NaN	1	1	Median	39038000	13298000	25740000	22921000	7390200	15531000	0	0	0	0	0	0	16117000	5908100	10209000	41934	4603	39468	256194;256195;256196	343611;343612;343613	343613			3	
QNEQMHALLAIALTMYPMR	0	Unmodified	2230.1061	0.10608511	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.972	89.252	3	1.2618E-06	51440	160513_QHF_FH_JSI10Kac_6	87.772	73.94			0.97797	1.1525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97797	1.1525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132740000	78735000	54007000	0	0	0	132740000	78735000	54007000	0	0	0	0	0	0	41935	5494	39469	256197	343614	343614			1	
QNESTIVEPK	1	Unmodified	1143.5772	0.57716749	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			19.091	18.397	2	0.018531	15365	160511_QHF_FH_JSI9i_1	49.777	29.447			0.43172	0.4255	14.873	2	2	Median	0.46887	0.38303	NaN	1	1	Median	0.3975	0.47269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121440000	75098000	46347000	61535000	35130000	26405000	59910000	39968000	19942000	0	0	0	0	0	0	41936	3063	39470	256198;256199	343615;343616	343616			2	
QNFEIGNNFAR	0	Unmodified	1308.6211	0.62109799	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	50.852	49.89	2	1.3677E-05	43031	160511_QHF_FH_JSI11i_2	106.88	90.547			0.77857	0.82676	34.612	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99524	1.056	NaN	1	1	Median	0.60908	0.64728	NaN	1	1	Median	55505000	36373000	19133000	0	0	0	0	0	0	38207000	24164000	14043000	17298000	12208000	5089900	41937	4181	39471	256200;256201;256202	343617;343618;343619	343618			3	
QNFHMEQLK	1	Unmodified	1173.5601	0.56007764	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	29.09	28.181	3	0.059576	23869	160511_QHF_FH_JSI12i_2	10.309	3.4203			0.94719	1.0235	10.5	4	0	Median	0.9827	0.86199	NaN	1	0	Median	0.82432	1.0218	NaN	1	0	Median	1.0574	1.1048	NaN	1	0	Median	0.91296	1.0251	NaN	1	0	Median	249470000	117660000	131810000	36852000	19019000	17834000	48029000	25700000	22329000	77779000	43446000	34333000	86813000	29497000	57316000	41938	3907	39472	256203;256204;256205;256206	343620;343621	343621			2	
QNFIDPLQNLCEK	1	Unmodified	1617.7821	0.78209166	4331	Q99961	SH3GL1	Endophilin-A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		78.524	78.068	2	6.2179E-06	71075	160511_QHF_FH_JSI11i_1	127.42	101.49			0.65479	0.69194	48.884	3	3	Plateau	0.39454	0.32233	NaN	1	1	Median	0.74933	0.85684	NaN	1	1	Median	0.55128	0.52793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74825000	40990000	33835000	15937000	9736500	6200900	26534000	12395000	14139000	32354000	18858000	13495000	0	0	0	41939	4331	39473	256207;256208;256209	343622;343623;343624;343625	343623			4	
QNFIDPLQNLHDK	1	Unmodified	1580.7947	0.79470526	4332	Q99962	SH3GL2	Endophilin-A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	64.339	63.356	2;3	4.8183E-11	55064	160511_QHF_FH_JSI11i_2	126.95	103.47			1.1956	1.2536	4.757	5	2	Median	1.447	1.2536	NaN	1	0	Median	1.0982	1.3774	NaN	1	1	Median	1.2453	1.2407	NaN	1	0	Median	1.1673	1.2902	4.924	2	1	Median	432520000	210140000	222370000	58350000	37821000	20529000	104700000	35983000	68721000	154500000	73177000	81319000	114970000	63164000	51804000	41940	4332	39474	256210;256211;256212;256213;256214	343626;343627;343628;343629;343630;343631	343630			6	
QNFLLFDMTTHPLTNNNIK	1	Unmodified	2260.131	0.13103753	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		5	2						4	4	1	3	3	89.523	86.032	3	7.1777E-14	81444	160511_QHF_FH_JSI11i_3	135.28	121.83			1.1451	1.0947	16.79	11	7	Median	1.568	1.337	13.258	4	4	Linear	0.80942	0.98126	NaN	1	0	Median	1.0924	1.0207	10	3	2	Median	1.0792	1.1338	24.344	3	1	Median	1081700000	476510000	605180000	403260000	157790000	245480000	121380000	64079000	57299000	349070000	157980000	191090000	207970000	96659000	111310000	41941	4717	39475	256215;256216;256217;256218;256219;256220;256221;256222;256223;256224;256225	343632;343633;343634;343635;343636;343637;343638;343639;343640;343641;343642;343643;343644;343645;343646;343647;343648;343649	343632			18	
QNFSKSWHDMQTTTAYK	2	Acetyl (K)	2113.9527	0.95273882	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.045	52.337	3	0.04709	28364	160513_QHF_FH_JSI11Kac_6	35.304	26.258			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3643900	3643900	0	0	0	0	0	0	0	3643900	3643900	0	0	0	0	41942	2779	39476	256226	343650	343650			1	
QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK	1	Unmodified	3357.6663	0.66634021	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	101.65	101.57	3	1.6402E-54	92342	160511_QHF_FH_JSI10i_1	166.61	158.95			1.0144	0.97269	30.475	3	1	Median	NaN	NaN	NaN	0	0	Median	0.83377	0.97269	NaN	1	0	Median	1.0144	0.96673	NaN	1	1	Median	1.6063	1.6439	NaN	1	0	Median	534220000	237530000	296690000	0	0	0	239410000	127980000	111430000	107990000	30025000	77966000	186820000	79529000	107290000	41943	1128	39477	256227;256228;256229	343651;343652;343653	343653			3	
QNGRDPPDPYVSLLLLPDK	1	Unmodified	2136.1215	0.1215187	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	89.118	88.737	3	7.1178E-05	76737	160511_QHF_FH_JSI12i_2	66.325	61.458			1.1152	1.186	34.744	4	2	Median	NaN	NaN	NaN	0	0	Median	0.6525	0.77069	NaN	1	0	Median	1.6779	1.6053	NaN	1	1	Median	1.1152	1.186	29.799	2	1	Median	103090000	49193000	53896000	0	0	0	15933000	10028000	5904600	29922000	10432000	19491000	57234000	28733000	28500000	41944	4399	39478	256230;256231;256232;256233	343654;343655;343656;343657	343655			4	
QNGTVVQYLPTLQEK	1	Unmodified	1716.9046	0.90464964	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		69.918	69.244	2	3.0585E-06	61521	160511_QHF_FH_JSI9i_1	120.84	86.877			1.0089	0.89721	5.8328	2	2	Median	1.1494	0.93498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88565	0.86095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31362000	12372000	18991000	13668000	5542700	8124900	0	0	0	17695000	6829100	10866000	0	0	0	41945	1443	39479	256234;256235	343658;343659	343659			2	
QNGWLPISAMNK	1	Unmodified	1357.6813	0.6812554	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			70.467	69.67	2	0.04512	61952	160511_QHF_FH_JSI10i_2	44.945	27.848			0.64738	0.80404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64738	0.80404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24271000	14617000	9654400	0	0	0	24271000	14617000	9654400	0	0	0	0	0	0	41946	1158	39480	256236	343660	343660			1	
QNHSILKIEK	2	Acetyl (K)	1250.6983	0.69828568	5386	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.149	31.578	3	0.0072447	17384	160513_QHF_FH_JSI11Kac_6	51.979	34.505			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41947	5386	39481	256237	343661	343661	3380		1	
QNIFLFYVK	1	Unmodified	1170.6437	0.64373091	5619	Q9Y4B5	MTCL1	Microtubule cross-linking factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	85.584	76.459	2	4.4483E-05	42389	160513_QHF_FH_JSI11Kac_6	122.74	94.568			0.83351	0.7804	16.44	3	0	Plateau	0.84899	0.73436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83351	0.7804	NaN	1	0	Median	0.96118	1.0015	NaN	1	0	Median	144740000	74490000	70247000	46088000	25285000	20803000	0	0	0	62979000	32676000	30302000	35671000	16529000	19142000	41948	5619	39482	256238;256239;256240	343662;343663;343664;343665;343666;343667	343662			6	
QNIHLIR	0	Unmodified	892.52428	0.52428448	5291	Q9UHA3	RSL24D1	Probable ribosome biogenesis protein RLP24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	21.307	20.482	3	0.0033544	16576	160511_QHF_FH_JSI12i_3	60.788	15.706			1.3705	1.2862	8.2672	3	0	Median	1.6721	1.3269	NaN	1	0	Median	0.97654	1.135	NaN	1	0	Median	1.3705	1.2862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133660000	67544000	66118000	30013000	14959000	15054000	45220000	21551000	23668000	58429000	31033000	27396000	0	0	0	41949	5291	39483	256241;256242;256243;256244	343668;343669;343670;343671;343672	343672			5	
QNIIYAAK	1	Unmodified	919.51272	0.51271674	86	D6RIA3	LOC285556		yes	yes	0	0	0	0				By MS/MS	12	0					1								1	72.019	62.703	2	0.025627	27558	160513_QHF_FH_JSI12Kac_2	52.683	23.534			0.9042	0.94723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9042	0.94723	NaN	1	0	Median	10953000	5459700	5493800	0	0	0	0	0	0	0	0	0	10953000	5459700	5493800	41950	86	39484	256245	343673	343673			1	
QNINLSAPIMSR	0	Unmodified	1342.7027	0.70271913	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	59.615	58.282	2	1.7568E-14	50714	160511_QHF_FH_JSI11i_2	138.25	116.79			1.1091	1.2315	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1091	1.2315	NaN	1	1	Median	125070000	49237000	75835000	0	0	0	0	0	0	0	0	0	125070000	49237000	75835000	41951	2545	39485	256246;256247;256248	343674;343675;343676	343675			3	
QNKLEQVEK	2	Acetyl (K)	1156.6088	0.60880197	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	36.161	27.621	2	0.0034139	15891	160513_QHF_FH_JSI12Kac_3	81.972	50.898			0.18756	0.20414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18756	0.20414	NaN	1	1	Median	5839200	4702700	1136600	0	0	0	0	0	0	0	0	0	5839200	4702700	1136600	41952	1612	39486	256249	343677	343677	1638		1	
QNKPTGFALGSIEGR	1	Unmodified	1573.8213	0.82125436	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							5	3	1		46.532	45.383	2;3	3.6316E-05	37248	160511_QHF_FH_JSI9i_3	73.833	61.688			1.2292	1.0978	40.547	6	5	Median	1.3163	1.0582	50.983	4	3	Median	1.2221	1.4293	NaN	1	1	Median	1.1567	1.0749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	774790000	306000000	468790000	436370000	159950000	276420000	249280000	107600000	141680000	89136000	38444000	50693000	0	0	0	41953	2092	39487	256250;256251;256252;256253;256254;256255;256256;256257;256258	343678;343679;343680;343681;343682;343683;343684;343685;343686	343684			9	
QNLAMTGEVSLTGK	1	Oxidation (M)	1463.729	0.72899346	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	42.625	42.157	2	9.0705E-05	38274	160511_QHF_FH_JSI12i_1	117.98	98.733			1.0288	1.2242	14.555	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0288	1.2242	NaN	1	0	Median	0.99713	0.95093	NaN	1	0	Median	1.1387	1.2229	NaN	1	0	Median	104400000	46896000	57503000	0	0	0	37320000	21070000	16250000	30558000	11139000	19418000	36522000	14687000	21835000	41954	1459	39488	256259;256260;256261;256262	343687;343688;343689;343690	343688		1128	4	
QNLAMTGEVSLTGK	1	Unmodified	1447.7341	0.73407884	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	54.789	54.124	2	1.4718E-23	49012	160511_QHF_FH_JSI11i_1	152.96	126.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41955	1459	39488	256263;256264;256265	343691;343692;343693	343691			3	
QNLDALLNQLK	1	Unmodified	1268.7089	0.70885036	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.536	80.378	2	0.0067031	73021	160511_QHF_FH_JSI10i_1	61.65	43.338			0.50452	0.54008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50452	0.54008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9684800	6737100	2947700	0	0	0	9684800	6737100	2947700	0	0	0	0	0	0	41956	2517	39489	256266	343694	343694			1	
QNLDTIVQAIQHIEGTQEK	1	Unmodified	2164.1124	0.11241058	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.091	96.754	3	0.0028973	85437	160511_QHF_FH_JSI10i_2	44.816	34.894			1.0106	1.0565	70.505	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6585	0.64176	NaN	1	1	Median	1.5511	1.7394	NaN	1	1	Median	15831000	7698800	8132600	0	0	0	0	0	0	6702100	4981400	1720800	9129300	2717400	6411900	41957	2174	39490	256267;256268;256269	343695;343696;343697	343697			3	
QNLEGDHSDAPMETETSFK	1	Unmodified	2134.9113	0.91132751	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.74	40.103	3	6.9069E-11	35509	160511_QHF_FH_JSI9i_1	128.66	118.91			0.98313	0.99207	15.377	4	0	Median	1.024	0.85157	NaN	1	0	Median	0.89059	1.064	NaN	1	0	Median	0.94391	0.92503	NaN	1	0	Median	1.1914	1.2065	NaN	1	0	Median	744780000	349850000	394930000	115820000	46224000	69597000	222650000	116940000	105700000	222600000	116200000	106400000	183720000	70486000	113230000	41958	723	39491	256270;256271;256272;256273	343698;343699;343700;343701;343702	343701			5	
QNLESNLTNLIK	1	Unmodified	1385.7514	0.75144346	277	O15344	MID1	E3 ubiquitin-protein ligase Midline-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		72.271	71.923	2	0.0044316	65448	160511_QHF_FH_JSI11i_1	56.013	32.869			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41959	277	39492	256274	343703	343703			1	
QNLFLGSLTSR	0	Unmodified	1234.667	0.66698555	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.37		4	1					2	1	4	2	1	1	69.431	65.974	2	1.0224E-05	54214	160511_QHF_FH_JSI9i_3	128.81	110.9			1.0435	0.92002	14.8	7	4	Median	1.089	0.92982	12.607	4	2	Median	0.65798	0.79694	NaN	1	0	Median	0.77069	0.77352	NaN	1	1	Median	0.95276	1.0439	NaN	1	1	Median	526480000	266960000	259520000	213530000	96651000	116880000	142310000	76756000	65557000	108040000	66701000	41340000	62601000	26856000	35745000	41960	2825	39493	256275;256276;256277;256278;256279;256280;256281;256282	343704;343705;343706;343707;343708;343709;343710;343711;343712;343713;343714	343707			11	
QNLFQEAEEFLYR	0	Unmodified	1685.8049	0.80493559	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	101.8	101.69	2;3	5.4456E-82	89427	160511_QHF_FH_JSI11i_2	245.58	229.05			1.0873	1.195	8.5026	5	1	Median	1.4152	1.195	NaN	1	0	Median	0.99073	1.2326	NaN	1	1	Median	1.2106	1.225	12.747	2	0	Median	0.95946	1.0782	NaN	1	0	Median	1702600000	820700000	881860000	239690000	99659000	140030000	373750000	178450000	195300000	602060000	299950000	302110000	487060000	242650000	244420000	41961	5391	39494	256283;256284;256285;256286;256287	343715;343716;343717;343718;343719;343720	343718			5	
QNLFTTWSHHLQQANIQFR	0	Unmodified	2368.1825	0.18249625	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									4	1	2		1	79.595	72.202	3;4	4.8804E-19	40007	160513_QHF_FH_JSI10Kac_6	144.68	126.14			0.85147	0.9538	16.145	4	0	Median	1.4435	1.2597	NaN	1	0	Median	0.77436	0.92016	8.0059	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87625	0.93426	NaN	1	0	Median	1085000000	567040000	517920000	301720000	126570000	175150000	728260000	414480000	313780000	0	0	0	54990000	25990000	29000000	41962	2517	39495	256288;256289;256290;256291	343721;343722;343723;343724;343725	343724			4	
QNLIAEVSTK	1	Unmodified	1101.603	0.60298831	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.86	4	4	4				3			3	4	4	4	45.193	42.413	2	8.7574E-08	36159	160511_QHF_FH_JSI12i_2	122.96	93.801			0.93591	0.94825	14.821	15	0	Median	1.4766	1.2258	31.431	3	0	Plateau	0.77039	0.92613	5.348	4	0	Median	1.0251	0.99457	6.3942	4	0	Median	0.87449	0.96278	9.5612	4	0	Median	3242500000	1639700000	1602700000	548080000	241820000	306260000	960080000	549700000	410380000	950450000	458450000	492010000	783850000	389760000	394090000	41963	1372	39496	256292;256293;256294;256295;256296;256297;256298;256299;256300;256301;256302;256303;256304;256305;256306	343726;343727;343728;343729;343730;343731;343732;343733;343734;343735;343736;343737;343738;343739;343740;343741;343742;343743;343744;343745;343746;343747;343748;343749;343750;343751;343752	343731			27	
QNLIEELRK	1	Unmodified	1141.6455	0.64552182	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		41.197	41.197	2	0.0065602	36236	160511_QHF_FH_JSI11i_3	70.256	30.189			0.15541	0.14594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15541	0.14594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120680000	103810000	16871000	0	0	0	0	0	0	120680000	103810000	16871000	0	0	0	41964	5365	39497	256307	343753	343753			1	
QNLLHSEK	1	Unmodified	967.50869	0.50869399	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.511	9.821	2	0.005541	7407	160511_QHF_FH_JSI12i_2	62.546	26.666			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41965	227	39498	256308	343754	343754			1	
QNLLSVGDYR	0	Unmodified	1163.5935	0.59348625	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.4	1	4						3		2	2	2	2	54.884	50.627	2	2.4523E-09	43507	160511_QHF_FH_JSI12i_2	128.86	104.64			0.98909	1.0008	13.838	6	0	Median	1.0018	0.86865	NaN	1	0	Median	0.67168	0.82442	NaN	1	0	Median	1.1215	1.1028	11.063	2	0	Median	0.95061	1.0355	7.4862	2	0	Median	458520000	223790000	234730000	78849000	38346000	40504000	89586000	54587000	34999000	158170000	67512000	90662000	131910000	63344000	68568000	41966	403	39499	256309;256310;256311;256312;256313;256314;256315;256316	343755;343756;343757;343758;343759;343760;343761;343762	343755			8	
QNLNKVK	2	Acetyl (K)	884.50797	0.50796571	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		19.631	12.141	2	0.011173	8450	160513_QHF_FH_JSI11Kac_3	89.369	44.648			0.34422	0.338	73.384	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86876	1.0122	NaN	1	0	Median	0.29674	0.29149	20.937	2	0	Median	NaN	NaN	NaN	0	0	Median	36404000	26970000	9434000	0	0	0	5913300	2979300	2934000	30490000	23990000	6500000	0	0	0	41967	3222	39500	256317;256318;256319	343763;343764	343763	2806		2	
QNLPLSSGK	1	Unmodified	942.51345	0.51344502	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	24.466	23.991	2	0.0012016	20586	160511_QHF_FH_JSI9i_1	79.059	25.504			0.57843	0.56448	48.774	5	5	Median	1.2419	1.0155	NaN	1	1	Median	0.47144	0.54771	NaN	1	1	Median	0.99181	0.9476	73.26	2	2	Median	0.52113	0.53243	NaN	1	1	Median	305660000	181650000	124000000	73051000	34030000	39020000	69565000	49076000	20489000	95285000	55366000	39919000	67754000	43179000	24575000	41968	1256	39501	256320;256321;256322;256323;256324	343765;343766;343767;343768;343769;343770	343770			6	
QNLSQFEAQAR	0	Unmodified	1290.6317	0.63166267	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	3	2	2	33.571	32.819	2	4.2377E-08	29341	160511_QHF_FH_JSI11i_1	126.39	108.13			0.9754	0.89927	35.93	10	6	Median	0.72559	0.58266	20.868	3	3	Plateau	0.54817	0.64148	56.935	3	3	Plateau	1.0563	1.0311	16.126	2	0	Median	1.1505	1.2327	21.266	2	0	Median	612960000	303290000	309670000	113340000	59383000	53954000	213370000	110660000	102720000	154230000	73036000	81192000	132020000	60210000	71809000	41969	3553	39502	256325;256326;256327;256328;256329;256330;256331;256332;256333;256334	343771;343772;343773;343774;343775;343776;343777;343778;343779;343780;343781;343782	343771			12	
QNLVIMGK	1	Unmodified	901.50552	0.50552287	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	39.707	38.9	2	0.004409	34863	160511_QHF_FH_JSI11i_1	76.035	57.999			0.99898	1.0786	15.133	6	4	Median	1.3049	1.114	NaN	1	1	Median	0.79586	0.95094	13.265	2	2	Median	0.896	0.87658	NaN	1	1	Median	1.1201	1.2078	4.7406	2	0	Median	372430000	204700000	167740000	37557000	16056000	21501000	133190000	75781000	57413000	90773000	50630000	40144000	110910000	62229000	48682000	41970	763	39503	256335;256336;256337;256338;256339;256340	343783;343784;343785;343786;343787;343788;343789	343783			7	
QNLVIMGKK	2	Unmodified	1029.6005	0.60048589	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	25.669	25.637	2	0.00063839	21382	160511_QHF_FH_JSI12i_3	91.9	74.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14871000	0	14871000	0	0	0	0	0	0	0	0	0	14871000	0	14871000	41971	763	39504	256341;256342	343790;343791	343790			2	
QNMGPSGQTHPPPQTLPR	0	Unmodified	1941.9479	0.94792821	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	29.658	29.04	3	4.254E-06	25291	160511_QHF_FH_JSI10i_2	91.457	79.983			1.0211	1.0166	15.69	6	0	Median	1.4393	1.2218	NaN	1	0	Median	0.69797	0.84881	NaN	1	0	Median	1.0187	0.97234	16.783	2	0	Median	1.0228	1.0499	15.038	2	0	Median	268600000	134980000	133610000	65235000	28322000	36913000	43484000	24571000	18913000	98794000	48377000	50417000	61085000	33714000	27371000	41972	4996	39505	256343;256344;256345;256346;256347;256348	343792;343793;343794;343795;343796;343797;343798	343798			5	
QNNFSLAMK	1	Unmodified	1051.5121	0.51206481	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	41.138	40.256	2	1.4525E-05	36095	160511_QHF_FH_JSI10i_1	109.48	94.039			1.1812	1.0235	64.311	9	4	Median	1.1812	0.9574	68.033	3	1	Median	1.7919	2.1507	105.01	2	1	Median	1.6001	1.5976	64.609	2	1	Median	1.3768	1.4699	74.847	2	1	Median	3584400000	1095800000	2488600000	720550000	170600000	549960000	1008300000	336070000	672200000	1095500000	352710000	742800000	760070000	236380000	523690000	41973	2094	39506	256349;256350;256351;256352;256353;256354;256355;256356;256357	343799;343800;343801;343802;343803;343804;343805;343806;343807;343808;343809;343810	343803			12	
QNNTNANKPK	2	Acetyl (K)	1169.5789	0.57889882	2562	Q14686	NCOA6	Nuclear receptor coactivator 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.7				1	3	3					2	2	3	7.3583	0.070471	2	1.1068E-11	2782	160513_QHF_FH_JSI11Kac_3	148.91	130.6			0.84307	0.90016	7.7875	7	0	Median	NaN	NaN	NaN	0	0	Median	0.75128	0.89692	16.695	2	0	Median	0.9294	0.90217	2.9008	2	0	Median	0.82724	0.90016	5.7184	3	0	Median	135800000	74699000	61097000	0	0	0	42579000	23527000	19052000	44326000	22757000	21568000	48892000	28415000	20476000	41974	2562	39507	256358;256359;256360;256361;256362;256363;256364	343811;343812;343813;343814;343815;343816;343817;343818;343819	343813	2541		9	
QNPEQSADEDAEK	1	Unmodified	1459.6063	0.60629536	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.361	9.9772	2	3.8228E-15	7640	160511_QHF_FH_JSI9i_1	155.97	135.67			1.2969	1.2899	35.392	4	1	Median	1.2335	1.0144	NaN	1	0	Median	1.9814	2.3055	NaN	1	1	Median	1.2637	1.2027	NaN	1	0	Median	1.331	1.3833	NaN	1	0	Median	252960000	117950000	135020000	71628000	32578000	39051000	50003000	16329000	33674000	72416000	42047000	30369000	58917000	26992000	31925000	41975	40	39508	256365;256366;256367;256368	343820;343821;343822;343823;343824	343824			5	
QNPFWWTHQR	0	Unmodified	1398.6582	0.6581522	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			61.91	53.545	3	0.046304	29424	160513_QHF_FH_JSI10Kac_6	30.331	27.545			0.98962	1.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98962	1.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10877000	5342100	5535300	0	0	0	10877000	5342100	5535300	0	0	0	0	0	0	41976	3101	39509	256369	343825	343825			0	
QNPLLAEAYSNLGNVYK	1	Unmodified	1892.9632	0.96322715	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.715	88.159	3	0.014288	77509	160511_QHF_FH_JSI11i_2	39.203	29.788			0.96781	0.95254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96781	0.95254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12578000	5895100	6682400	0	0	0	0	0	0	12578000	5895100	6682400	0	0	0	41977	274	39510	256370	343826	343826			1	
QNPMATEK	1	Unmodified	917.42767	0.42766648	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	9.3428	9.0396	2	0.0045395	6963	160511_QHF_FH_JSI12i_1	75.738	52.215			4.2056	4.687	98.597	2	2	Median	NaN	NaN	NaN	0	0	Median	7.9184	9.412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2336	2.3341	NaN	1	1	Median	532600000	62420000	470180000	0	0	0	442280000	32046000	410240000	0	0	0	90318000	30374000	59944000	41978	2789	39511	256371;256372	343827;343828	343827			2	
QNQFYDTQVIK	1	Unmodified	1382.683	0.68302954	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	48.08	45.706	2	4.3487E-23	41031	160511_QHF_FH_JSI11i_1	173.32	161.69			0.95797	0.93894	44.475	5	0	Median	1.0556	0.84298	NaN	1	0	Median	0.84988	1.0035	NaN	1	0	Median	0.95797	0.91841	NaN	1	0	Median	1.4124	1.5241	68.507	2	0	Median	1070900000	578860000	492030000	249060000	126120000	122940000	231690000	133530000	98156000	309490000	155400000	154090000	280640000	163800000	116840000	41979	4442	39512	256373;256374;256375;256376;256377	343829;343830;343831;343832;343833;343834;343835;343836	343830			8	
QNQGAAPEIQALK	1	Unmodified	1366.7205	0.72047768	3345	Q86VS8	HOOK3	Protein Hook homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.724	37.353	2	2.8653E-05	33679	160511_QHF_FH_JSI11i_1	82.171	55.056			0.28642	0.33147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28642	0.33147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39023000	27878000	11145000	0	0	0	39023000	27878000	11145000	0	0	0	0	0	0	41980	3345	39513	256378;256379;256380	343837;343838;343839	343837			3	
QNQIPTEDGSR	0	Unmodified	1243.5793	0.57929275	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.491	13.523	2	0.0057376	10766	160511_QHF_FH_JSI9i_1	62.823	40.083			1.0818	0.92495	NaN	1	1	Median	1.0818	0.92495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37495000	17550000	19945000	37495000	17550000	19945000	0	0	0	0	0	0	0	0	0	41981	3312	39514	256381	343840	343840			1	
QNQQDQHQIQVLEQSILR	0	Unmodified	2204.1298	0.12979198	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	3	1	72.321	71.691	3	1.0952E-05	62009	160511_QHF_FH_JSI12i_3	83.253	68.639			1.2611	1.5469	41.54	4	3	Linear	0.62072	0.51202	NaN	1	1	Median	0.93354	1.1523	NaN	1	1	Median	0.66805	0.66709	NaN	1	1	Median	1.1674	1.1887	NaN	1	0	Median	115930000	66242000	49688000	25777000	16818000	8959100	31045000	20250000	10795000	25597000	18079000	7518500	33510000	11095000	22415000	41982	4886	39515	256382;256383;256384;256385;256386;256387	343841;343842;343843;343844;343845;343846	343846			6	
QNQTTAISTPASSEISK	1	Unmodified	1761.8745	0.87447172	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.315	35.707	2	1.389E-22	32059	160511_QHF_FH_JSI11i_1	180.97	169.1			1.0329	1.0268	4.7011	4	0	Median	1.2789	1.0334	NaN	1	0	Median	0.80151	0.94071	NaN	1	0	Median	1.0659	1.0418	NaN	1	0	Median	1.0009	1.0203	NaN	1	0	Median	337770000	171910000	165860000	68837000	32248000	36589000	93111000	57227000	35884000	90659000	38118000	52541000	85164000	44317000	40847000	41983	1685	39516	256388;256389;256390;256391	343847;343848;343849;343850;343851;343852;343853;343854;343855	343848			9	
QNQTTSAVSTPASSETSK	1	Unmodified	1822.8545	0.85446456	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	6				2					1	2	3	2	19.029	16.961	2	1.5567E-61	14301	160511_QHF_FH_JSI10i_1	273.38	252.53			1.0764	1.0694	15.829	8	4	Median	1.2566	1.0306	NaN	1	0	Median	1.0626	1.2541	17.297	2	2	Median	1.0764	1.0592	10.75	3	2	Plateau	1.1008	1.1823	22.089	2	0	Median	816620000	422370000	394250000	123150000	59265000	63880000	288190000	150140000	138050000	232820000	112920000	119900000	172460000	100050000	72418000	41984	1685	39517	256392;256393;256394;256395;256396;256397;256398;256399	343856;343857;343858;343859;343860;343861;343862;343863;343864;343865;343866	343863			11	
QNRVPVNEVVIR	0	Unmodified	1421.8103	0.81029574	477	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				37.291	35.818	3	0.033577	29264	160511_QHF_FH_JSI9i_3	20.739	17.611			2.4532	2.0013	NaN	1	0	Median	2.4532	2.0013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27177000	8331200	18846000	27177000	8331200	18846000	0	0	0	0	0	0	0	0	0	41985	477	39518	256400	343867	343867			1	
QNRYDGQVAVFGSDLQEK	1	Unmodified	2052.9865	0.98648179	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.47		6	4					2	1	3	4	4	2	54.594	52.158	2;3	3.0966E-06	45973	160511_QHF_FH_JSI11i_3	96.487	87.323			0.93021	1.0333	18.491	12	1	Median	0.94394	0.80791	14.283	2	0	Median	0.93021	1.1297	9.1143	4	0	Median	1.1168	1.0463	22.063	4	1	Median	0.83241	0.88593	3.656	2	0	Median	1732000000	863620000	868340000	345250000	169910000	175330000	355460000	169050000	186410000	688400000	348930000	339470000	342860000	175730000	167130000	41986	1208	39519	256401;256402;256403;256404;256405;256406;256407;256408;256409;256410;256411;256412;256413	343868;343869;343870;343871;343872;343873;343874;343875;343876;343877;343878;343879;343880;343881;343882;343883;343884;343885;343886;343887;343888;343889	343868			22	
QNSAYNMHSILSNTSAE	0	Unmodified	1865.8214	0.82139029	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	53.699	52.749	2	0.00085489	45559	160511_QHF_FH_JSI11i_2	56.956	53.827			1.1448	1.1781	8.4852	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1081	1.1095	NaN	1	0	Median	1.1828	1.2509	NaN	1	0	Median	43406000	21322000	22084000	0	0	0	0	0	0	26995000	12626000	14369000	16411000	8696000	7715100	41987	2640	39520	256414;256415	343890;343891;343892	343892			3	
QNSDDEEQPQLSDEEK	1	Unmodified	1889.7763	0.77627382	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.152	21.623	2	6.0036E-40	18446	160511_QHF_FH_JSI9i_1	200.21	183.95			1.0037	1.0665	12.056	4	0	Median	1.3013	1.0413	NaN	1	0	Median	0.95145	1.0922	NaN	1	0	Median	0.86759	0.8532	NaN	1	0	Median	1.0589	1.1065	NaN	1	0	Median	124450000	65213000	59238000	39902000	16668000	23234000	26741000	13910000	12831000	27331000	15304000	12027000	30478000	19332000	11146000	41988	3778	39521	256416;256417;256418;256419	343893;343894;343895;343896;343897;343898;343899	343899			7	
QNSEQIDMQDIK	1	Unmodified	1447.6613	0.66130782	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.018	37.691	2	9.0641E-06	33928	160511_QHF_FH_JSI11i_1	118.61	95.287			0.95694	1.0004	6.0828	2	2	Median	NaN	NaN	NaN	0	0	Median	0.83557	0.95825	NaN	1	1	Median	1.0959	1.0443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65815000	31228000	34587000	0	0	0	35622000	17648000	17974000	30193000	13580000	16613000	0	0	0	41989	3021	39522	256420;256421;256422	343900;343901;343902	343900			3	
QNSFVAEAMLLMATILHLGK	1	Unmodified	2186.1592	0.15916654	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	103.84	95.681	2;3	4.1099E-139	54682	160513_QHF_FH_JSI9Kac_6	261.69	243.79			1.0856	1.1701	17.406	6	2	Median	1.4964	1.2772	NaN	1	0	Median	0.86064	1.0291	8.5482	2	0	Median	1.0317	0.97283	NaN	1	0	Median	1.2608	1.3751	13.207	2	2	Median	2772500000	1245700000	1526900000	507690000	204770000	302920000	2170900000	987510000	1183400000	75680000	43580000	32100000	18239000	9795200	8443300	41990	1804	39523	256423;256424;256425;256426;256427;256428	343903;343904;343905;343906;343907;343908;343909;343910;343911	343905			9	
QNSFVAEAMLLMATILHLGK	1	Oxidation (M)	2202.1541	0.15408116	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									3	2	1			101.58	93.553	3	8.9868E-06	53506	160513_QHF_FH_JSI9Kac_6	131.65	116.89			1.2164	1.4433	29.885	3	3	Plateau	1.0157	0.87163	9.5067	2	2	Median	1.2164	1.4433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	343610000	164880000	178720000	179680000	82854000	96831000	163920000	82030000	81893000	0	0	0	0	0	0	41991	1804	39523	256429;256430;256431	343912;343913;343914	343913		1489	3	
QNSLTQFMSIPSSVIHPAMVR	0	Unmodified	2342.1875	0.18750655	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			100.54	100.35	3	1.4044E-06	81291	160511_QHF_FH_JSI9i_3	74.364	58.943			0.90523	0.88446	27.254	2	0	Median	0.87216	0.72943	NaN	1	0	Median	0.93955	1.0724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49986000	24431000	25554000	14410000	7494600	6915000	35576000	16937000	18639000	0	0	0	0	0	0	41992	5320	39524	256432;256433	343915;343916;343917	343917			3	
QNSNSQSTPGSSGQR	0	Unmodified	1533.6768	0.67677497	35;4105	A8CG34;A6NF01;Q96HA1	POM121C;POM121B;POM121	Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121	no	no	0	0	0	0	By MS/MS				1	0	1									1				5.0037	4.4277	2	1.0155E-11	2341	160511_QHF_FH_JSI9i_1	110.38	94.489			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41993	35;4105	39525	256434	343918	343918			1	
QNSQLPAQVQNGPSQEELEIQRR	0	Unmodified	2648.3267	0.32665389	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0.707	1	2	1							1	1	2		50.439	49.772	3	8.5679E-15	43591	160511_QHF_FH_JSI9i_2	119.38	112.8			0.997	1.2132	15.574	3	1	Median	1.4778	1.2715	NaN	1	0	Median	0.98342	1.2132	NaN	1	0	Median	0.997	0.95129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155760000	81225000	74531000	44191000	15660000	28531000	81871000	45172000	36699000	29694000	20393000	9300700	0	0	0	41994	3570	39526	256435;256436;256437;256438	343919;343920;343921;343922;343923;343924	343922			6	
QNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAK	1	Unmodified	3039.3628	0.36284098	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				67.33	66.336	3	0.00019372	58981	160511_QHF_FH_JSI9i_1	39.4	30.562			1.6641	1.3603	NaN	1	1	Median	1.6641	1.3603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18159000	4425000	13734000	18159000	4425000	13734000	0	0	0	0	0	0	0	0	0	41995	2997	39527	256439	343925	343925			1	
QNSVPPSQTK	1	Unmodified	1084.5513	0.55128709	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.6416	6.9992	2	0.0099136	4587	160511_QHF_FH_JSI9i_1	49.06	33.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41996	3323	39528	256440	343926	343926			1	
QNTEESTIGR	0	Unmodified	1133.5313	0.53127993	5397	Q9ULF5	SLC39A10	Zinc transporter ZIP10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1					1	3	1	10.548	7.9374	2	6.3835E-09	7065	160511_QHF_FH_JSI10i_1	125.16	104.46			0.76261	0.7797	30.298	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70874	0.68468	41.513	2	1	Median	0.76261	0.7797	NaN	1	0	Median	153090000	91267000	61819000	0	0	0	0	0	0	84696000	54995000	29701000	68390000	36272000	32118000	41997	5397	39529	256441;256442;256443;256444;256445	343927;343928;343929;343930;343931;343932	343932			6	
QNTGVWLVK	1	Unmodified	1043.5764	0.57637963	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	48.44	47.481	2	0.019265	40827	160511_QHF_FH_JSI11i_2	50.805	34.661			0.89494	0.94099	41.153	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69768	0.70341	NaN	1	1	Median	1.148	1.2588	NaN	1	1	Median	175760000	90229000	85535000	0	0	0	0	0	0	115190000	60535000	54653000	60575000	29693000	30882000	41998	1045	39530	256446;256447	343933;343934	343934			2	
QNVAYEYLCHLEEAK	1	Unmodified	1865.8618	0.86179854	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	1	3	73.081	72.124	2;3	2.4129E-05	63462	160511_QHF_FH_JSI9i_2	103.88	92.557			0.98403	0.85396	37.055	5	1	Median	0.98403	0.85396	NaN	1	0	Median	0.6361	0.76414	NaN	1	0	Median	0.72078	0.73808	NaN	1	0	Median	1.3617	1.5107	14.509	2	1	Median	456990000	244360000	212630000	58212000	30056000	28156000	92076000	47671000	44405000	137980000	82479000	55497000	168730000	84156000	84570000	41999	1600	39531	256448;256449;256450;256451;256452;256453	343935;343936;343937;343938;343939;343940;343941;343942;343943;343944	343939			10	
QNVAYNREEER	0	Unmodified	1406.6539	0.65385468	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			9.1018	8.6271	3	0.029642	6602	160511_QHF_FH_JSI10i_2	29.807	16.67			1.0493	1.2811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0493	1.2811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20263000	10958000	9305000	0	0	0	20263000	10958000	9305000	0	0	0	0	0	0	42000	2437	39532	256454	343945	343945			1	
QNVIMFVGLQGSGK	1	Oxidation (M)	1492.7708	0.77079869	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.481							4	7		1	3	3	4	75.569	64.982	2	5.2247E-24	33514	160513_QHF_FH_JSI9Kac_5	154.66	142.04			0.89631	0.98149	12.186	11	0	Median	1.1826	0.95488	NaN	1	0	Median	0.8683	1.0096	3.7962	3	0	Median	0.89631	0.83919	9.5735	3	0	Median	0.99289	1.0844	16.379	4	0	Median	45753000	24136000	21617000	5543000	2682000	2861000	12849000	6740500	6108700	12381000	6843200	5537400	14980000	7870000	7109900	42001	1929	39533	256455;256456;256457;256458;256459;256460;256461;256462;256463;256464;256465	343946;343947;343948;343949;343950;343951;343952;343953;343954;343955;343956	343947		1597	11	
QNVIMFVGLQGSGK	1	Unmodified	1476.7759	0.77588407	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	2	1	77.583	71.219	2	1.7224E-30	37657	160513_QHF_FH_JSI9Kac_6	158.4	131.73			0.94273	1.1151	26.62	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.0009	1.1806	NaN	1	0	Median	0.95276	0.95921	14.771	2	0	Median	0.59128	0.64581	NaN	1	1	Median	123780000	62272000	61510000	0	0	0	47418000	21113000	26305000	68072000	34579000	33493000	8292300	6580900	1711300	42002	1929	39533	256466;256467;256468;256469;256470	343957;343958;343959;343960;343961;343962	343960			6	
QNVNAAMVFEFLYK	1	Unmodified	1672.8283	0.82831357	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	94.459	85.881	2	1.2223E-56	48245	160513_QHF_FH_JSI11Kac_6	234.65	193.11			0.95969	0.93031	39.45	5	4	Median	0.79334	0.68228	NaN	1	1	Median	0.70007	0.83597	NaN	1	0	Median	1.0427	0.98733	8.4114	2	2	Median	1.8467	1.9383	NaN	1	1	Median	481680000	216250000	265440000	51875000	35025000	16850000	90659000	49469000	41191000	129400000	67108000	62290000	209750000	64644000	145100000	42003	4017	39534	256471;256472;256473;256474;256475	343963;343964;343965;343966;343967;343968	343964			6	
QNVNAAMVFEFLYK	1	Oxidation (M)	1688.8232	0.82322819	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	90.809	81.367	2	0.00078774	43853	160513_QHF_FH_JSI12Kac_6	99.5	75.246			1.0155	1.0453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0155	1.0453	NaN	1	1	Median	19114000	10208000	8905700	0	0	0	0	0	0	0	0	0	19114000	10208000	8905700	42004	4017	39534	256476	343969	343969		2374	1	
QNVQFMHNR	0	Unmodified	1172.5509	0.55090993	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0		By MS/MS			3	0			3								3			17.24	16.229	2;3	0.0053407	13053	160511_QHF_FH_JSI10i_3	57.177	33.023			0.52154	0.6027	14.378	2	1	Median	NaN	NaN	NaN	0	0	Median	0.52154	0.6027	14.378	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44978000	32558000	12420000	0	0	0	44978000	32558000	12420000	0	0	0	0	0	0	42005	3921	39535	256477;256478;256479	343970;343971;343972	343972			3	
QNVVKPIDNPPHPGSTK	2	Unmodified	1826.9639	0.96389585	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		24.052	24.052	3	0.011966	20307	160511_QHF_FH_JSI11i_3	44.998	36.179			0.47613	0.45623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47613	0.45623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55414000	38192000	17222000	0	0	0	0	0	0	55414000	38192000	17222000	0	0	0	42006	4753	39536	256480	343973	343973			1	
QNYDEMSPAGQISK	1	Unmodified	1566.6984	0.69842161	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	38.025	37.408	2	5.7851E-05	33384	160511_QHF_FH_JSI10i_1	74.698	59.326			0.89652	0.89193	16.447	4	1	Median	1.1327	0.96917	NaN	1	0	Median	0.56756	0.66622	NaN	1	1	Median	0.93812	0.89427	NaN	1	0	Median	0.85676	0.88958	NaN	1	0	Median	167000000	88167000	78835000	32157000	15497000	16660000	42592000	26782000	15809000	39076000	19536000	19540000	53178000	26352000	26825000	42007	2574	39537	256481;256482;256483;256484;256485	343974;343975;343976;343977;343978	343977			5	
QNYVDLVSSLSPSLESSSQVEPGTDRK	1	Unmodified	2921.4254	0.42542446	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							1	3	3	3	84.6	84.183	3	6.1541E-36	72729	160511_QHF_FH_JSI12i_2	159.7	154.49			1.0302	1.0413	4.7197	10	1	Median	1.1716	0.99476	NaN	1	0	Median	0.8559	1.0331	1.3996	3	1	Plateau	1.0901	1.0138	7.0451	3	0	Plateau	1.0488	1.0877	2.1996	3	0	Plateau	684310000	344880000	339430000	60769000	30462000	30307000	181130000	97931000	83202000	232070000	107780000	124290000	210340000	108710000	101630000	42008	538	39538	256486;256487;256488;256489;256490;256491;256492;256493;256494;256495	343979;343980;343981;343982;343983;343984;343985;343986;343987;343988;343989;343990;343991;343992;343993;343994;343995;343996;343997;343998;343999;344000;344001;344002;344003	343985			25	
QPAADTEASEQQALHTVQYGLLK	1	Unmodified	2497.2449	0.24488132	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.428	72.155	3	1.4974E-05	65408	160511_QHF_FH_JSI10i_1	56.681	44.378			1.1676	1.251	87.252	2	1	Median	NaN	NaN	NaN	0	0	Median	0.56705	0.67504	NaN	1	0	Median	2.4043	2.3185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78238000	37527000	40712000	0	0	0	44773000	29983000	14790000	33466000	7544400	25921000	0	0	0	42009	2925	39539	256496;256497	344004;344005;344006;344007	344006			4	
QPAEHLQLLEEAAK	1	Unmodified	1575.8257	0.82567103	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.87		5						2		2	1	2	2	55.042	50.036	2;3	2.7772E-05	42747	160511_QHF_FH_JSI12i_2	103.88	91.32			0.92784	1.0431	36.786	5	4	Median	2.4739	2.0767	NaN	1	1	Median	0.81203	0.99687	NaN	1	1	Median	0.87203	0.85211	NaN	1	1	Median	1.1443	1.2817	29.129	2	1	Median	543420000	195040000	348370000	64485000	16879000	47606000	48852000	22060000	26792000	4112200	2384500	1727800	425970000	153720000	272250000	42010	1410	39540	256498;256499;256500;256501;256502;256503;256504	344008;344009;344010;344011;344012;344013;344014;344015;344016	344010			9	
QPAENVNQYLTDPK	1	Unmodified	1615.7842	0.78420015	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	49.687	46.071	2	1.9388E-06	41566	160511_QHF_FH_JSI12i_1	156.14	134.15			0.97372	0.9583	3.6806	6	0	Median	1.1384	0.91794	NaN	1	0	Median	0.80119	0.9409	1.9611	2	0	Median	1.0141	0.98204	2.8308	2	0	Median	0.94136	1.0009	NaN	1	0	Median	3968600000	2059300000	1909300000	911910000	396270000	515640000	1023300000	608130000	415210000	1034500000	532420000	502070000	998850000	522430000	476420000	42011	1208	39541	256505;256506;256507;256508;256509;256510	344017;344018;344019;344020;344021;344022;344023;344024;344025;344026;344027;344028;344029;344030;344031	344023			15	
QPAIISQLDPVNER	0	Unmodified	1578.8366	0.83657007	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	3.14	6	8					1			3	4	4	4	65.738	64.316	2;3	4.4343E-41	57003	160511_QHF_FH_JSI10i_2	210.79	187.87			0.92141	0.91086	11.798	15	1	Median	1.0382	0.87467	9.1158	3	0	Plateau	0.76256	0.91672	8.9465	4	1	Median	1.0155	1.0419	9.7583	4	0	Median	0.85343	0.91967	9.8326	4	0	Median	1549900000	819610000	730280000	348190000	179230000	168960000	339240000	174760000	164480000	411510000	212100000	199410000	450960000	253530000	197430000	42012	2265	39542	256511;256512;256513;256514;256515;256516;256517;256518;256519;256520;256521;256522;256523;256524;256525	344032;344033;344034;344035;344036;344037;344038;344039;344040;344041;344042;344043;344044;344045;344046;344047;344048;344049	344049			17	
QPAIMPGQSYGLEDGSCSYK	1	Unmodified	2186.9613	0.96125459	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	1	3	59.212	58.654	2;3	6.4412E-16	52939	160511_QHF_FH_JSI10i_1	160.78	141.95			0.94899	1.0147	42.012	5	4	Median	NaN	NaN	NaN	0	0	Median	0.63501	0.72204	NaN	1	1	Median	0.58008	0.55769	NaN	1	1	Median	1.4973	1.5804	22.155	3	2	Plateau	199500000	110580000	88918000	0	0	0	24182000	18016000	6165500	46287000	34147000	12141000	129030000	58418000	70612000	42013	1063	39543	256526;256527;256528;256529;256530	344050;344051;344052;344053;344054;344055	344055			5	
QPAPEPPKPYSLVR	1	Acetyl (K)	1619.8671	0.86714192	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.8	0.433						1	3				3	1		70.186	59.768	2;3	0.022201	31844	160513_QHF_FH_JSI10Kac_4	48.004	41.62			0.86391	0.9997	9.8459	4	0	Median	NaN	NaN	NaN	0	0	Median	0.8517	0.99978	4.8886	3	0	Median	0.8763	0.85891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16094000	8300200	7793400	0	0	0	10617000	5800800	4816700	5476000	2499300	2976700	0	0	0	42014	5474	39544	256531;256532;256533;256534	344056;344057;344058;344059	344057	3439		4	
QPAPEPPKPYSLVR	1	Unmodified	1577.8566	0.85657723	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	43.403	43.17	3	0.02032	36644	160511_QHF_FH_JSI12i_3	37.555	30.674			0.81451	0.89355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81451	0.89355	NaN	1	0	Median	71032000	48896000	22136000	0	0	0	0	0	0	0	0	0	71032000	48896000	22136000	42015	5474	39544	256535	344060	344060			1	
QPASQLQK	1	Unmodified	898.48723	0.48723027	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.6662	7.3186	2	0.0030848	5189	160511_QHF_FH_JSI12i_1	75.213	41.36			0.89928	0.88812	23.032	4	0	Median	1.0585	0.86474	NaN	1	0	Median	0.76399	0.91214	NaN	1	0	Median	0.68546	0.66029	NaN	1	0	Median	1.1004	1.1573	NaN	1	0	Median	2223300000	1138500000	1084700000	690100000	323870000	366240000	581640000	344410000	237220000	504970000	248140000	256820000	446550000	222090000	224460000	42016	2780	39545	256536;256537;256538;256539	344061;344062;344063;344064;344065;344066;344067	344062			7	
QPDPDENKPMEDK	2	Unmodified	1541.6668	0.66678713	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	11.883	11.48	2;3	0.00049109	9049	160511_QHF_FH_JSI10i_1	65.092	51.465			1.0464	1.0536	5.4954	4	1	Median	1.3924	1.1354	NaN	1	0	Median	0.86695	1.0223	NaN	1	0	Median	1.1359	1.0859	NaN	1	1	Median	0.9639	1.0087	NaN	1	0	Median	490400000	228780000	261620000	135780000	58180000	77596000	109280000	57086000	52199000	108260000	50002000	58260000	137080000	63511000	73567000	42017	1181	39546	256540;256541;256542;256543;256544	344068;344069;344070;344071;344072;344073	344072			6	
QPDSGISSIR	0	Unmodified	1058.5356	0.53563702	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	20.543	20.25	2	0.0056218	17493	160511_QHF_FH_JSI11i_1	53.751	30.68			1.056	1.052	8.479	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76848	0.9074	NaN	1	0	Median	1.1037	1.0747	NaN	1	0	Median	0.94224	0.99662	NaN	1	0	Median	603090000	309450000	293640000	0	0	0	172880000	92173000	80709000	219830000	114050000	105780000	210370000	103230000	107150000	42018	816	39547	256545;256546;256547	344074;344075;344076	344074			3	
QPDSPTALYHFNASLYLLR	0	Unmodified	2205.1219	0.12185306	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	86.13	76.75	3	2.5619E-34	42678	160513_QHF_FH_JSI11Kac_6	166.61	148.32			0.81708	0.82763	3.7886	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88653	0.85011	NaN	1	0	Median	0.75307	0.80576	NaN	1	0	Median	338930000	181300000	157630000	0	0	0	0	0	0	252890000	134650000	118240000	86036000	46647000	39390000	42019	4361	39548	256548;256549	344077;344078	344078			2	
QPDVGLPKPDLVLFLQLQLADAAK	2	Unmodified	2588.4578	0.45777463	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.085	91.364	3	2.8145E-37	53065	160513_QHF_FH_JSI10Kac_6	205.77	188.56			0.94264	1.0932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94264	1.0932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51037000	33196000	17841000	0	0	0	51037000	33196000	17841000	0	0	0	0	0	0	42020	1241	39549	256550	344079	344079			1	
QPEGTGMIDEEFTVAR	0	Unmodified	1778.8145	0.814514	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.258	62.54	2	0.00012931	56629	160511_QHF_FH_JSI11i_1	82.543	63.798			1.1931	1.1661	18.752	3	2	Median	1.56	1.2798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1931	1.1661	NaN	1	0	Median	0.85574	0.89183	NaN	1	1	Median	166220000	77902000	88322000	47407000	14312000	33094000	0	0	0	55450000	28820000	26629000	63367000	34769000	28598000	42021	1400	39550	256551;256552;256553;256554	344080;344081;344082;344083	344080			4	
QPEGTPLNHFR	0	Unmodified	1294.6418	0.64183343	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		25.22	25.22	3	0.040172	21503	160511_QHF_FH_JSI11i_3	29.39	20.877			0.75413	0.68893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75413	0.68893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32053000	17743000	14310000	0	0	0	0	0	0	32053000	17743000	14310000	0	0	0	42022	3100	39551	256555	344084	344084			1	
QPEHLGLDQYIIK	1	Unmodified	1552.8249	0.82494275	4339	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	62.002	61.109	3	0.0002384	53055	160511_QHF_FH_JSI11i_2	66.215	45.834			1.2164	1.2107	18.995	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2821	1.5757	NaN	1	0	Median	1.2164	1.2107	NaN	1	0	Median	1.0093	1.0897	NaN	1	0	Median	118630000	54954000	63674000	0	0	0	39888000	18578000	21310000	46344000	21959000	24385000	32395000	14417000	17978000	42023	4339	39552	256556;256557;256558	344085;344086	344086			2	
QPEYLDATGGTLHPYQMEGLNWLR	0	Unmodified	2788.3279	0.32789944	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	95.65	95.303	3	0.050712	83798	160511_QHF_FH_JSI11i_2	16.114	12.133			1.1643	1.2399	6.8964	3	0	Plateau	1.2996	1.0956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1643	1.2399	NaN	1	0	Median	1.1053	1.2288	NaN	1	0	Median	100500000	46918000	53582000	25022000	11192000	13830000	0	0	0	38814000	17095000	21718000	36664000	18630000	18034000	42024	2578	39553	256559;256560;256561	344087;344088;344089;344090	344090			4	
QPFPLETK	1	Unmodified	958.51238	0.51238239	5831				yes	yes	0	0	0	0				By MS/MS	2	0		1											1	7.7713	7.1696	3	0.017966	4980	160511_QHF_FH_JSI12i_2	34.253	10.824	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42025	5831	39554	256562	344091	344091			1	
QPFVPENNPER	0	Unmodified	1325.6364	0.6364137	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		28.738	28.469	2	0.040441	25294	160511_QHF_FH_JSI10i_1	37.696	23.578			1.0314	1.1055	0.43844	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94833	1.1089	NaN	1	0	Median	1.1217	1.1021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92679000	52730000	39949000	0	0	0	47623000	26407000	21216000	45057000	26323000	18733000	0	0	0	42026	2678	39555	256563;256564	344092	344092			1	
QPGNETADTVLK	1	Unmodified	1271.6357	0.635745	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.761	25.192	2	0.0073082	22325	160511_QHF_FH_JSI10i_1	51.276	29.039			1.1577	1.1091	4.9499	4	0	Median	1.327	1.097	NaN	1	0	Median	0.9551	1.1079	NaN	1	0	Median	1.1571	1.1103	NaN	1	0	Median	1.1583	1.2194	NaN	1	0	Median	679520000	296300000	383210000	216860000	95067000	121790000	150760000	72708000	78051000	108520000	38331000	70194000	203370000	90198000	113170000	42027	1961	39556	256565;256566;256567;256568	344093;344094;344095;344096	344096			4	
QPGPVTNGQLQQPTTGAASGGYIK	1	Unmodified	2369.1975	0.19753719	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		50.906	50.491	3	6.0108E-05	45705	160511_QHF_FH_JSI11i_1	52.321	43.157			1.4355	1.3809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4355	1.3809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40405000	13987000	26419000	0	0	0	0	0	0	40405000	13987000	26419000	0	0	0	42028	101	39557	256569;256570	344097;344098	344097			2	
QPGRFDEVLIR	0	Unmodified	1328.7201	0.72008375	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			48.277	47.27	3	0.0033101	41628	160511_QHF_FH_JSI10i_2	46.352	31.208			1.4716	1.5373	2.2832	2	2	Median	1.7663	1.5623	NaN	1	1	Median	1.2261	1.5127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83390000	38457000	44933000	36680000	15387000	21294000	46710000	23070000	23639000	0	0	0	0	0	0	42029	100	39558	256571;256572	344099;344100	344100			2	
QPHVGDYR	0	Unmodified	970.46208	0.46207815	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1		1	3	2	9.2038	7.605	2;3	0.0016838	5877	160511_QHF_FH_JSI12i_3	54.982	46.641			1.5454	1.547	26.223	6	1	Median	NaN	NaN	NaN	0	0	Median	0.73542	0.88163	NaN	1	0	Median	1.5275	1.4884	20.541	3	1	Median	1.6008	1.6288	1.8304	2	0	Median	1539600000	637810000	901810000	0	0	0	152370000	109740000	42632000	807140000	305040000	502100000	580100000	223030000	357070000	42030	2244	39559	256573;256574;256575;256576;256577;256578	344101;344102;344103;344104;344105;344106	344105			6	
QPIDIFLSHDWPR	0	Unmodified	1622.8205	0.82052608	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	83.065	82.642	3	6.6778E-05	73459	160511_QHF_FH_JSI11i_3	66.285	54.671			1.1235	1.0734	12.242	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0707	0.97713	NaN	1	0	Median	0.99629	1.0512	16.253	2	1	Median	131900000	67476000	64425000	0	0	0	0	0	0	53089000	26822000	26267000	78812000	40654000	38158000	42031	5360	39560	256579;256580;256581	344107;344108;344109;344110;344111	344108			5	
QPIPASSMPQQIGIPTSSLTQVVHSAGR	0	Unmodified	2886.5022	0.50217541	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		86.661	86.661	3	4.1913E-05	77350	160511_QHF_FH_JSI11i_3	47.018	40.143			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42032	4714	39561	256582	344112	344112			1	
QPIPFFVETLIFHPK	1	Unmodified	1811.9974	0.99742781	4198	Q96PQ0	SORCS2	VPS10 domain-containing receptor SorCS2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.642	88.922	3	0.00035909	51139	160513_QHF_FH_JSI10Kac_6	65.038	55.875			0.82428	0.99035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82428	0.99035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41685000	23936000	17749000	0	0	0	41685000	23936000	17749000	0	0	0	0	0	0	42033	4198	39562	256583	344113	344113			1	
QPIPVASHAVGQPVSTGGQTLVAK	1	Unmodified	2341.2754	0.27539358	5399	Q9ULH7	MKL2	MKL/myocardin-like protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.46	53.341	3	1.0426E-13	47303	160511_QHF_FH_JSI11i_3	111.65	98.614			1.2637	1.202	5.7591	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2307	1.1541	NaN	1	0	Median	1.2977	1.252	NaN	1	1	Median	75910000	30127000	45784000	0	0	0	0	0	0	43327000	17817000	25509000	32584000	12309000	20274000	42034	5399	39563	256584;256585	344114;344115	344114			2	
QPLHWAAFLGHLEVLK	1	Unmodified	1858.0254	0.025373895	3584	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				85.96	77.348	4	0.016882	42673	160513_QHF_FH_JSI9Kac_6	38.261	28.064			1.8489	1.5896	NaN	1	0	Median	1.8489	1.5896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39390000	14111000	25279000	39390000	14111000	25279000	0	0	0	0	0	0	0	0	0	42035	3584	39564	256586	344116	344116			0	
QPLLGPPESMR	0	Unmodified	1223.6332	0.63324258	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	48.396	47.656	2	4.164E-05	41045	160511_QHF_FH_JSI11i_2	96.89	77.103			0.85796	0.96204	13.039	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84847	1.055	NaN	1	1	Median	0.86756	0.8773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	339980000	197870000	142110000	0	0	0	87838000	40850000	46988000	252140000	157020000	95119000	0	0	0	42036	40	39565	256587;256588;256589;256590;256591;256592	344117;344118;344119;344120;344121;344122;344123	344121			7	
QPLLGPPESMREHVVAASK	1	Unmodified	2045.0728	0.072794373	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			51.718	50.14	4	5.0515E-05	40919	160511_QHF_FH_JSI9i_3	64.203	59.586			1.0643	1.0368	1.9206	2	0	Median	1.2916	1.051	NaN	1	0	Median	0.877	1.0228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120340000	55443000	64899000	77132000	29277000	47855000	43210000	26166000	17045000	0	0	0	0	0	0	42037	40	39566	256593;256594	344124;344125	344124			2	
QPLLIIGK	1	Unmodified	880.57459	0.57458871	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	56.697	55.777	2	0.037165	47874	160511_QHF_FH_JSI12i_2	40.103	8.8137			0.98569	0.99275	22.172	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.56346	0.69448	NaN	1	0	Median	0.98569	0.99275	NaN	1	0	Median	0.95184	1.0424	NaN	1	0	Median	58705000	27354000	31351000	0	0	0	14463000	7733800	6728900	24857000	9536600	15320000	19386000	10083000	9302100	42038	5339	39567	256595;256596;256597	344126	344126			1	
QPLLLSEDEEDTK	1	Unmodified	1515.7304	0.73043325	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	46.542	46.046	2	8.9168E-05	41321	160511_QHF_FH_JSI10i_1	96.604	81.914			0.59572	0.92404	19.237	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.58855	0.69595	NaN	1	0	Median	0.94494	0.92404	NaN	1	0	Median	0.9372	1.0046	NaN	1	0	Median	943580000	456430000	487150000	0	0	0	404700000	171510000	233190000	256220000	123930000	132290000	282660000	160990000	121670000	42039	40	39568	256598;256599;256600	344127;344128	344128			1	
QPLTVEHMYEDISQDHVK	1	Unmodified	2168.0208	0.020818382	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.652	61.14	3	0.00016149	53175	160511_QHF_FH_JSI11i_2	62.765	53.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42040	4987	39569	256601	344129	344129			1	
QPLWNHLLNYYK	1	Unmodified	1587.8198	0.8197978	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.25	5.63			6						2	2	1	2	3	75.664	72.977	2;3	3.1325E-07	37274	160513_QHF_FH_JSI9Kac_6	109.24	79.547			1.2919	1.2733	21.711	8	1	Median	1.7196	1.4401	40.688	2	1	Median	0.87387	1.0232	NaN	1	0	Median	1.4531	1.3509	19.082	2	0	Median	1.2098	1.2163	14.542	3	0	Plateau	880250000	421560000	458690000	201690000	71631000	130060000	53762000	25028000	28734000	156350000	65703000	90646000	468440000	259200000	209250000	42041	3904	39570	256602;256603;256604;256605;256606;256607;256608;256609	344130;344131;344132;344133;344134;344135;344136;344137;344138	344135			9	
QPMFYHLGHFSK	1	Unmodified	1490.7129	0.71288988	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	4	2	1	1	50.655	47.609	3;4	0.00020438	39635	160511_QHF_FH_JSI12i_3	66.533	59.493			1.0023	0.98729	43.366	8	4	Median	1.3903	1.1181	65.883	4	3	Median	0.81748	0.96382	3.0986	2	1	Median	1.0698	0.98941	NaN	1	0	Median	0.93914	0.95731	NaN	1	0	Median	450380000	232720000	217650000	141770000	69958000	71814000	72655000	38124000	34531000	87548000	41597000	45951000	148400000	83043000	65359000	42042	802	39571	256610;256611;256612;256613;256614;256615;256616;256617	344139;344140;344141;344142;344143;344144;344145;344146;344147	344145			7	
QPMILEK	1	Unmodified	857.46807	0.46807473	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	29.654	28.741	2	0.044649	24295	160511_QHF_FH_JSI12i_2	45.081	13.792			1.2427	1.2713	37.947	4	0	Median	1.7316	1.4597	NaN	1	0	Median	0.90013	1.1072	NaN	1	0	Median	1.7156	1.7535	NaN	1	0	Median	0.66129	0.73278	NaN	1	0	Median	963360000	464830000	498530000	237950000	93842000	144110000	188200000	114640000	73565000	287440000	122130000	165310000	249760000	134220000	115540000	42043	1658	39572	256618;256619;256620;256621	344148	344148			1	
QPMILEKGQR	1	Acetyl (K)	1240.6598	0.65979168	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			49.959	39.569	2	0.016328	22221	160513_QHF_FH_JSI10Kac_4	54.608	35.828			1.76	2.0621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.76	2.0621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5503400	1790300	3713100	0	0	0	5503400	1790300	3713100	0	0	0	0	0	0	42044	1658	39573	256622	344149	344149	1680		1	
QPMNAASGAAMSLAGAEK	1	Oxidation (M)	1719.792	0.79200442	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	13									3	3	3	4	42.059	41.412	2;3	2.0349E-06	37438	160511_QHF_FH_JSI10i_1	100.11	85.954			1.0361	1.0491	17.727	13	3	Median	1.1992	0.98674	17.152	3	1	Median	1.0361	1.2076	8.3737	3	0	Median	1.0295	1.0122	18.41	3	1	Median	0.97867	1.0292	16.15	4	1	Median	1077400000	503720000	573700000	229280000	98312000	130960000	329290000	158480000	170810000	190650000	94767000	95886000	328200000	152170000	176040000	42045	895	39574	256623;256624;256625;256626;256627;256628;256629;256630;256631;256632;256633;256634;256635	344150;344151;344152;344153;344154;344155;344156;344157;344158;344159	344157		459;460	9	
QPMNAASGAAMSLAGAEK	1	Unmodified	1703.7971	0.7970898	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	3.43	9	1				1				4	3	2	2	52.749	51.197	2;3	1.3128E-22	46358	160511_QHF_FH_JSI11i_1	206.06	188.25			0.86987	0.90215	23.86	11	3	Median	1.164	0.94511	42.308	4	3	Median	0.74684	0.87571	2.2121	3	0	Median	0.88181	0.85737	3.8267	2	0	Median	0.89472	0.95001	3.7989	2	0	Median	8420700000	4085000000	4335700000	2715000000	1161200000	1553800000	1991600000	1001800000	989810000	1932100000	1013200000	918900000	1781900000	908780000	873170000	42046	895	39574	256636;256637;256638;256639;256640;256641;256642;256643;256644;256645;256646	344160;344161;344162;344163;344164;344165;344166;344167;344168;344169;344170;344171;344172;344173;344174;344175;344176;344177;344178;344179;344180;344181	344162			22	
QPMNAASGAAMSLAGAEK	1	2 Oxidation (M)	1735.7869	0.78691904	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	2	0	By MS/MS			By MS/MS	12.5	0.5					1	1				1			1	18.203	0.39152	3	0.0072976	15506	160513_QHF_FH_JSI12Kac_2	47.754	36.9			1.1315	0.91755	NaN	1	0	Median	1.1315	0.91755	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12328000	5710400	6617700	12328000	5710400	6617700	0	0	0	0	0	0	0	0	0	42047	895	39574	256647;256648	344182;344183	344183		459;460	1	
QPMVPESLADYITAAYVEMR	0	Unmodified	2283.0915	0.091540484	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	102.25	102.15	3	8.1675E-07	90750	160511_QHF_FH_JSI10i_2	92.098	76.844			1.1989	1.0948	15.564	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90251	1.0948	NaN	1	0	Median	1.0089	0.97256	NaN	1	0	Median	1.1989	1.324	NaN	1	0	Median	563580000	274160000	289410000	72362000	31874000	40488000	141300000	73822000	67479000	150200000	74878000	75318000	199720000	93590000	106130000	42048	1411	39575	256649;256650;256651;256652	344184	344184			1	
QPNAQPQYLHGSK	1	Unmodified	1466.7266	0.72662569	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0		By MS/MS		By matching	2.33	0.471		2	1								1		2	14.688	14.198	3	0.0082371	11747	160511_QHF_FH_JSI10i_2	29.912	17.936			1.1823	1.2697	22.712	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69935	0.83571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1173	1.2174	9.3918	2	0	Median	99073000	47992000	51081000	0	0	0	26267000	12707000	13560000	0	0	0	72806000	35285000	37521000	42049	3229	39576	256653;256654;256655	344185	344185			1	
QPPARPPGPSTDTGALADGVVSQAVK	1	Unmodified	2515.3031	0.3030649	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				61.692	60.733	3	0.028894	53426	160511_QHF_FH_JSI9i_2	27.89	20.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9410000	0	9410000	9410000	0	9410000	0	0	0	0	0	0	0	0	0	42050	3906	39577	256656	344186	344186			1	
QPPIDNIIR	0	Unmodified	1064.5978	0.59784335	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	48.06	47.304	2	0.013899	42521	160511_QHF_FH_JSI10i_1	45.972	22.449			1.0327	0.86969	15.516	5	0	Median	0.96067	0.8037	6.9637	2	0	Median	0.74101	0.86969	NaN	1	0	Median	1.0616	1.0458	NaN	1	0	Median	1.0635	1.1103	NaN	1	0	Median	776390000	387570000	388810000	217660000	103220000	114440000	213500000	125460000	88043000	179960000	84095000	95868000	165260000	74799000	90465000	42051	1766	39578	256657;256658;256659;256660;256661	344187;344188;344189	344188			3	
QPPIQSTAGAVPVRNEK	1	Unmodified	1790.9639	0.96389585	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	30.669	30.184	3	0.0026959	26433	160511_QHF_FH_JSI10i_2	46.249	23.774			1.0782	1.0034	18.634	5	0	Median	1.1607	0.98361	NaN	1	0	Median	0.95281	1.1804	NaN	1	0	Median	1.0818	1.0547	7.0456	2	0	Median	0.77927	0.72747	NaN	1	0	Median	241930000	122300000	119630000	54762000	23743000	31019000	59745000	31311000	28433000	95500000	47587000	47913000	31925000	19658000	12267000	42052	1847	39579	256662;256663;256664;256665;256666	344190;344191;344192	344191			3	
QPPPDSSEEAPPATQNFIIPK	1	Unmodified	2262.1168	0.11682726	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		65.666	65.271	3	0.0046817	59087	160511_QHF_FH_JSI10i_1	37.169	31.778			0.85588	0.92097	30.876	2	2	Median	NaN	NaN	NaN	0	0	Median	0.96617	1.1457	NaN	1	1	Median	0.75819	0.74034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95444000	47936000	47509000	0	0	0	53209000	22792000	30417000	42235000	25144000	17092000	0	0	0	42053	2645	39580	256667;256668	344193;344194	344194			2	
QPPPLAPQSPQGGVMGGSNSNQQQQMR	0	Unmodified	2818.3239	0.32389347	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		49.342	48.925	3	4.0364E-12	44298	160511_QHF_FH_JSI11i_1	86.732	80.156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42054	1598	39581	256669;256670	344195;344196	344195			2	
QPPQQPAAK	1	Unmodified	963.51378	0.51377937	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.1466	6.9131	2	0.00315	4794	160511_QHF_FH_JSI10i_1	65.676	44.977			0.97601	0.98954	18.921	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8012	0.94995	NaN	1	0	Median	1.3601	1.343	NaN	1	0	Median	0.97601	0.98954	NaN	1	0	Median	375860000	182980000	192890000	0	0	0	133280000	76680000	56603000	128950000	57344000	71607000	113630000	48954000	64676000	42055	4744	39582	256671;256672;256673	344197;344198;344199;344200	344200			4	
QPPSNPPPRPPAEAR	0	Unmodified	1609.8325	0.83248775	1031	P13498	CYBA	Cytochrome b-245 light chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		17.227	16.854	3	0.0037338	14419	160511_QHF_FH_JSI9i_2	50.843	32.01			1.2358	1.0597	21.256	4	1	Linear	1.1568	0.98979	NaN	1	0	Median	0.95969	1.1425	NaN	1	0	Median	1.4755	1.4512	16.906	2	1	Median	NaN	NaN	NaN	0	0	Median	204060000	84075000	119990000	65748000	34113000	31635000	55118000	24874000	30244000	83198000	25088000	58110000	0	0	0	42056	1031	39583	256674;256675;256676;256677	344201;344202;344203;344204;344205	344204			5	
QPPSQFEPLDMK	1	Unmodified	1415.6755	0.67550132	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	57.748	56.612	2	2.3179E-05	50908	160511_QHF_FH_JSI10i_1	88.596	71.365			1.2336	1.0277	NaN	1	0	Median	1.2336	1.0277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	329930000	162340000	167590000	329930000	162340000	167590000	0	0	0	0	0	0	0	0	0	42057	1411	39584	256678;256679;256680;256681;256682;256683;256684	344206;344207;344208;344209;344210;344211;344212	344210			6	
QPPTAAGRPVDASPR	0	Unmodified	1518.7903	0.79028858	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	2	1		16.799	16.102	3	0.00038742	13540	160511_QHF_FH_JSI10i_2	63.037	32.487			0.97108	1.0405	29.15	4	1	Median	1.2648	1.0827	NaN	1	0	Median	0.97108	1.1647	21.555	2	0	Median	0.67325	0.67399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	209800000	101990000	107810000	66106000	29406000	36700000	118300000	59459000	58841000	25396000	13123000	12273000	0	0	0	42058	5725	39585	256685;256686;256687;256688	344213;344214;344215;344216	344216			4	
QPQGHLLLIGVSGAGK	1	Unmodified	1573.894	0.89402537	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.92	6.56		1	6						6	3	3	5	2	58.296	53.897	2;3	2.6438E-16	29676	160513_QHF_FH_JSI10Kac_6	141.58	124.56			0.93933	0.90462	8.755	13	2	Median	1.0511	0.8888	5.476	3	0	Median	0.76438	0.90235	8.0365	3	0	Median	0.98058	0.93174	12.179	5	2	Median	0.88631	0.90898	0.68029	2	0	Median	1779800000	951450000	828330000	169600000	90821000	78783000	375330000	206500000	168820000	817150000	415510000	401630000	417700000	238610000	179090000	42059	2517	39586	256689;256690;256691;256692;256693;256694;256695;256696;256697;256698;256699;256700;256701	344217;344218;344219;344220;344221;344222;344223;344224;344225;344226;344227;344228;344229;344230;344231;344232;344233;344234;344235;344236;344237;344238	344237			21	
QPQPSPAEGR	0	Unmodified	1065.5203	0.52032131	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.4988	7.1616	2	3.4234E-08	5026	160511_QHF_FH_JSI10i_1	125.71	93.103			1.0624	1.0917	1.9862	4	0	Median	1.3421	1.1111	NaN	1	0	Median	0.95115	1.1055	NaN	1	0	Median	1.1004	1.0661	NaN	1	0	Median	1.0257	1.078	NaN	1	0	Median	715700000	358640000	357060000	198410000	98260000	100150000	209700000	109610000	100090000	162030000	70316000	91711000	145570000	80448000	65119000	42060	1872	39587	256702;256703;256704;256705	344239;344240;344241;344242;344243;344244	344243			5	
QPSLHMSAAAASR	0	Unmodified	1325.651	0.65101791	606;4414;2389	O94776;Q9BTC8;Q13330	MTA2;MTA3;MTA1	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	no	no	0	0	0	0			By MS/MS		16	0									1			1		29.517	20.319	3	0.060459	11843	160513_QHF_FH_JSI11Kac_6	17.546	10.664			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42061	606;4414;2389	39588	256706	344245	344245			1	
QPSQGPTFGIK	1	Unmodified	1158.6033	0.60332266	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	34.928	34.183	2	0.00035583	30630	160511_QHF_FH_JSI11i_1	84.17	67.394			0.8416	0.80067	21.8	7	1	Median	1.0087	0.83646	23.353	2	0	Median	0.65753	0.76054	NaN	1	0	Median	0.90177	0.90429	21.976	2	1	Median	0.94649	1.0166	33.772	2	0	Median	961510000	450680000	510830000	202000000	103850000	98148000	203710000	87546000	116160000	279620000	131560000	148050000	276190000	127720000	148470000	42062	1004	39589	256707;256708;256709;256710;256711;256712;256713	344246;344247;344248;344249;344250;344251;344252;344253	344246			8	
QPSTQSDTYSMLALGNVWLQTLHQPTR	0	Unmodified	3071.5135	0.51346838	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.023	85.631	3	1.6844E-23	48458	160513_QHF_FH_JSI11Kac_6	165.34	153.93			0.78475	0.75616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78475	0.75616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83916000	31930000	51986000	0	0	0	0	0	0	83916000	31930000	51986000	0	0	0	42063	3115	39590	256714	344254	344254			1	
QPSVIYSWIQNK	1	Unmodified	1461.7616	0.76161421	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			3							1		2		73.701	73.216	2	0.0034156	65297	160511_QHF_FH_JSI11i_3	66.056	43.414			0.80068	0.77846	30.96	3	3	Plateau	1.7062	1.4225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95169	0.91125	24.388	2	2	Median	NaN	NaN	NaN	0	0	Median	72817000	37298000	35519000	16160000	4950700	11209000	0	0	0	56658000	32348000	24310000	0	0	0	42064	4425	39591	256715;256716;256717	344255;344256;344257	344256			3	
QPTEEEASSK	1	Unmodified	1104.4935	0.49349744	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.3333	5.0178	2	2.284E-07	2895	160511_QHF_FH_JSI11i_1	115.7	101.03			0.86414	0.92394	11.388	4	0	Median	1.2982	1.0796	NaN	1	0	Median	0.77267	0.90922	NaN	1	0	Median	0.96645	0.93889	NaN	1	0	Median	0.7659	0.81924	NaN	1	0	Median	999970000	536600000	463380000	213880000	84203000	129670000	254750000	121740000	133010000	268890000	167590000	101300000	262460000	163060000	99396000	42065	2676	39592	256718;256719;256720;256721	344258;344259;344260;344261;344262;344263;344264	344258			7	
QPTELDALVFGHLYTILTTQLTNDELSEK	1	Unmodified	3288.6766	0.67655377	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	99.569	90.127	4	6.2414E-06	49599	160513_QHF_FH_JSI12Kac_6	67.367	50.966			0.81704	0.86897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81704	0.86897	NaN	1	0	Median	101400000	58104000	43291000	0	0	0	0	0	0	0	0	0	101400000	58104000	43291000	42066	524	39593	256722	344265	344265			1	
QPTIFQNK	1	Unmodified	974.51853	0.5185304	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.668	3	6	2							2	3	3	3	25.565	24.901	2	0.001083	21789	160511_QHF_FH_JSI10i_2	94.262	52.609			1.0359	0.99731	31.752	11	3	Median	1.0746	0.90102	19.898	2	0	Median	0.7839	0.93981	24.132	3	1	Median	1.3338	1.3751	39.291	3	1	Plateau	0.71559	0.78016	42.977	3	1	Plateau	5735600000	2873500000	2862000000	612590000	269120000	343470000	1849500000	971100000	878430000	1956700000	1058400000	898330000	1316700000	574900000	741810000	42067	1996	39594	256723;256724;256725;256726;256727;256728;256729;256730;256731;256732;256733	344266;344267;344268;344269;344270;344271;344272;344273;344274;344275;344276;344277;344278;344279;344280;344281;344282;344283;344284;344285;344286;344287;344288	344285			23	
QPTIFQNKK	2	Unmodified	1102.6135	0.61349341	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	16.485	15.887	2;3	0.0008021	12708	160511_QHF_FH_JSI9i_3	49.444	41.798			0.97834	1.1012	20.026	7	1	Median	1.622	1.3224	3.9732	2	0	Median	0.97134	1.1192	2.2909	2	0	Median	0.99684	0.93371	19.701	2	0	Median	0.72977	0.82298	NaN	1	1	Median	523220000	258490000	264720000	180560000	85449000	95109000	121730000	58353000	63375000	149400000	71726000	77677000	71526000	42964000	28563000	42068	1996	39595	256734;256735;256736;256737;256738;256739;256740	344289;344290;344291;344292;344293;344294;344295;344296	344294			8	
QPTPPSEAAASK	1	Unmodified	1182.5881	0.58806652	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.275	12.852	2	0.0014777	10725	160511_QHF_FH_JSI12i_1	62.408	45.022			1.0161	1.01	7.8129	4	0	Median	1.1273	0.91108	NaN	1	0	Median	0.94641	1.1003	NaN	1	0	Median	1.0808	1.0249	NaN	1	0	Median	0.95525	0.99528	NaN	1	0	Median	269680000	136690000	132990000	68820000	32209000	36611000	71814000	41852000	29962000	65637000	33527000	32111000	63406000	29100000	34306000	42069	3328	39596	256741;256742;256743;256744	344297;344298;344299;344300;344301;344302;344303;344304;344305	344301			9	
QPVAGSEGAQYR	0	Unmodified	1261.6051	0.60511357	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.776	13.338	2	7.8036E-05	11069	160511_QHF_FH_JSI12i_1	93.843	75.531			0.92724	0.91588	3.2216	4	1	Median	1.1305	0.90823	NaN	1	1	Median	0.78299	0.90561	NaN	1	0	Median	0.93195	0.9236	NaN	1	0	Median	0.92256	0.97086	NaN	1	0	Median	785570000	417370000	368200000	241510000	128570000	112940000	203340000	117720000	85620000	201130000	98709000	102420000	139580000	72372000	67211000	42070	5280	39597	256745;256746;256747;256748	344306;344307;344308;344309;344310	344307			5	
QPVFGANYIK	1	Unmodified	1135.6026	0.60259438	3949	Q969T9	WBP2	WW domain-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.873	49.893	2	0.010999	43696	160511_QHF_FH_JSI9i_2	56.81	41.659			0.99936	1.035	8.7995	4	2	Median	1.0992	0.95733	NaN	1	1	Median	0.90844	1.0944	NaN	1	1	Median	0.97889	0.97873	NaN	1	0	Median	1.0203	1.1499	NaN	1	0	Median	614420000	323980000	290440000	105210000	54769000	50446000	116980000	63807000	53171000	241340000	123200000	118140000	150880000	82202000	68683000	42071	3949	39598	256749;256750;256751;256752	344311;344312;344313;344314	344312			4	
QPVGGGQKLLTR	1	Acetyl (K)	1294.7357	0.73573382	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	45.06	34.937	2	0.051625	20954	160513_QHF_FH_JSI11Kac_4	42.001	31.243			1.0244	1.0043	12.435	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68191	0.80367	NaN	1	0	Median	1.0244	1.0043	NaN	1	0	Median	0.90088	0.98852	NaN	1	0	Median	18418000	9046600	9371400	0	0	0	1721100	1127700	593410	13963000	6426700	7536000	2734300	1492200	1242000	42072	2586	39599	256753;256754;256755	344315	344315			1	
QPVGNQEMENLK	1	Unmodified	1385.6609	0.66091389	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	29.667	29.22	2	0.0011796	26182	160511_QHF_FH_JSI12i_1	64.73	39.592			0.73962	0.79893	22.23	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60081	0.68272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91049	0.93492	NaN	1	0	Median	56371000	32922000	23448000	0	0	0	22150000	14463000	7686700	0	0	0	34221000	18459000	15762000	42073	2269	39600	256756;256757	344316;344317;344318	344316			3	
QPVLSQTEAR	0	Unmodified	1127.5935	0.59348625	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.98	4	2				2	2			2	1	4	3	19.89	16.589	2	4.9264E-05	13730	160511_QHF_FH_JSI9i_1	93.111	75.725			0.94808	0.94035	22.921	10	1	Median	0.92074	0.76303	41.817	2	1	Median	0.74615	0.88714	NaN	1	0	Median	0.94808	0.94035	15.044	4	0	Median	0.63365	0.67525	29.057	3	0	Plateau	1964100000	1151800000	812310000	380280000	209290000	171000000	417160000	249430000	167730000	488100000	287990000	200110000	678580000	405110000	273470000	42074	1301	39601	256758;256759;256760;256761;256762;256763;256764;256765;256766;256767	344319;344320;344321;344322;344323;344324;344325;344326;344327;344328;344329;344330;344331;344332;344333;344334;344335	344331			17	
QPVYVVDVSK	1	Unmodified	1132.6128	0.61282471	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.07	42.853	2	0.022327	38080	160511_QHF_FH_JSI9i_1	48.981	42.668			1.2033	0.98225	NaN	1	1	Median	1.2033	0.98225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130940000	70500000	60438000	130940000	70500000	60438000	0	0	0	0	0	0	0	0	0	42075	2767	39602	256768	344336	344336			1	
QPYAVSELAGHQTSAESWGTGR	0	Unmodified	2331.088	0.087986745	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.83	1	7	5						4	3	4	6	4	56.776	54.09	2;3	3.1869E-47	47769	160511_QHF_FH_JSI10i_2	209.24	192.75			0.89537	0.94383	11.593	17	0	Median	1.1033	0.99294	3.7115	3	0	Plateau	0.79376	1.0575	4.7439	4	0	Linear	0.87058	0.8444	8.3575	6	0	Median	0.87282	0.90883	6.3525	4	0	Median	5166700000	2781000000	2385700000	512780000	229730000	283060000	884610000	479520000	405090000	2480800000	1413800000	1067000000	1288500000	657920000	630550000	42076	1457	39603	256769;256770;256771;256772;256773;256774;256775;256776;256777;256778;256779;256780;256781;256782;256783;256784;256785	344337;344338;344339;344340;344341;344342;344343;344344;344345;344346;344347;344348;344349;344350;344351;344352;344353;344354;344355;344356;344357;344358;344359;344360;344361;344362;344363;344364;344365;344366;344367;344368;344369;344370;344371;344372;344373;344374;344375	344361			39	
QPYFIYFPQIK	1	Unmodified	1442.7598	0.7598233	4079	Q96FZ2	HMCES	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.244	78.971	2	7.1049E-10	42051	160513_QHF_FH_JSI12Kac_6	130.96	105.58			1.3282	1.373	17.442	4	1	Median	1.83	1.5821	NaN	1	1	Median	1.3404	1.5415	NaN	1	0	Median	1.3161	1.2229	NaN	1	0	Median	1.0585	1.1088	NaN	1	0	Median	210730000	82970000	127760000	45910000	11074000	34836000	60251000	25046000	35205000	54142000	21896000	32245000	50423000	24954000	25469000	42077	4079	39604	256786;256787;256788;256789	344376;344377;344378;344379;344380;344381	344380			6	
QPYITQNYFPVGTVVEYECRPGYR	0	Unmodified	2935.3963	0.39631336	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		85.204	84.621	3	1.0554E-08	74571	160511_QHF_FH_JSI11i_2	77.847	65.533			1.1633	1.0572	24.961	4	2	Median	1.3415	1.1334	NaN	1	1	Median	1.4059	1.6348	NaN	1	0	Median	1.0031	0.96433	3.1715	2	1	Median	NaN	NaN	NaN	0	0	Median	198640000	93602000	105040000	39630000	11394000	28235000	64851000	28637000	36213000	94161000	53571000	40591000	0	0	0	42078	893	39605	256790;256791;256792;256793	344382;344383;344384;344385	344385			4	
QQAAELR	0	Unmodified	814.42972	0.42971539	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	7.7454	7.4199	2	0.0055967	5229	160511_QHF_FH_JSI12i_1	94.262	26.281			1.0665	1.0465	13.258	5	1	Median	1.306	1.0546	NaN	1	0	Median	0.74853	0.87806	7.1443	2	1	Median	1.0665	1.0465	NaN	1	0	Median	1.1225	1.1768	NaN	1	0	Median	1131900000	559470000	572440000	233890000	104960000	128940000	474000000	251140000	222860000	223160000	110080000	113070000	200860000	93287000	107570000	42079	2730	39606	256794;256795;256796;256797;256798;256799;256800	344386;344387;344388;344389	344387			4	
QQAANLLQDMGQR	0	Unmodified	1471.7202	0.72016011	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		51.223	50.486	2	9.9522E-10	43557	160511_QHF_FH_JSI11i_2	112.15	94.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42080	428	39607	256801;256802	344390;344391	344390			2	
QQAAQAFIHNSLYGPGTNR	0	Unmodified	2072.0188	0.018784967	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			52.608	51.244	3	1.1188E-06	42782	160511_QHF_FH_JSI10i_3	95.814	78.114			0.64842	0.74068	37.72	3	2	Plateau	1.8594	1.5188	NaN	1	1	Median	0.82928	0.97967	39.548	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78354000	36666000	41688000	20055000	7472600	12582000	58299000	29193000	29106000	0	0	0	0	0	0	42081	5429	39608	256803;256804;256805	344392;344393;344394;344395;344396;344397;344398	344393			7	
QQAAYYAQTSPQGMPQHPPAPQGQ	0	Unmodified	2580.1816	0.18156955	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	2	3	46.981	46.329	2;3	2.3153E-71	42169	160511_QHF_FH_JSI12i_1	238.22	218.83			1.0979	1.1559	16.997	9	1	Median	1.4557	1.1968	22.735	2	0	Median	0.99179	1.1559	11.307	3	1	Median	1.1318	1.0979	8.5457	2	0	Median	1.3012	1.3816	29.247	2	0	Median	924090000	456790000	467300000	192270000	90200000	102070000	206230000	103920000	102310000	364660000	179800000	184860000	160930000	82874000	78057000	42082	3966	39609	256806;256807;256808;256809;256810;256811;256812;256813;256814;256815;256816	344399;344400;344401;344402;344403;344404;344405;344406;344407;344408;344409	344404			11	
QQAEVEK	1	Unmodified	830.4134	0.41339662	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.3684	5.0453	2	0.0038807	3061	160511_QHF_FH_JSI10i_1	101.64	30.731			0.82142	0.90884	15.983	4	1	Linear	0.79688	0.65151	NaN	1	1	Median	0.74464	0.87655	NaN	1	0	Median	0.84672	0.82081	NaN	1	0	Median	0.88119	0.94261	NaN	1	0	Median	912010000	505420000	406580000	184920000	101980000	82945000	255070000	140990000	114080000	209430000	118950000	90477000	262580000	143500000	119080000	42083	598	39610	256817;256818;256819;256820	344410;344411;344412;344413	344412			4	
QQAGAQGPGSADLEDGEMGK	1	Unmodified	1944.8483	0.84833332	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.301	33.698	2	9.39E-20	30449	160511_QHF_FH_JSI12i_1	169.04	163.19			1.0248	1.0662	4.0413	4	0	Median	1.3387	1.0607	NaN	1	0	Median	0.92885	1.0969	NaN	1	0	Median	1.0903	1.0718	NaN	1	0	Median	0.9633	0.99775	NaN	1	0	Median	168270000	83577000	84695000	25614000	12565000	13050000	55986000	30554000	25433000	44969000	16818000	28151000	41703000	23641000	18062000	42084	4581	39611	256821;256822;256823;256824	344414;344415;344416;344417;344418;344419;344420;344421;344422	344418			9	
QQAHDLLINKPDGTFLLR	1	Unmodified	2078.1273	0.12727278	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	1			By MS/MS		3	0			2									2		67.017	67.017	3;4	2.456E-05	59646	160511_QHF_FH_JSI11i_3	81.723	65.781			1.1147	1.0454	11.26	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1147	1.0454	11.26	2	0	Median	NaN	NaN	NaN	0	0	Median	155220000	66918000	88306000	0	0	0	0	0	0	155220000	66918000	88306000	0	0	0	42085	1530;1750	39612	256825;256826	344423;344424	344423			2	
QQAIELTQEEPYSDIIATPGPR	0	Unmodified	2455.2231	0.22308324	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	80.912	80.394	3	0.0021981	73211	160511_QHF_FH_JSI12i_1	42.384	32.535			1.1066	1.1808	20.962	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1066	1.1808	20.962	2	2	Median	45401000	23347000	22054000	0	0	0	0	0	0	0	0	0	45401000	23347000	22054000	42086	396	39613	256827;256828	344425;344426	344425			2	
QQAKPVK	2	Acetyl (K)	839.4865	0.48650199	3277	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	10.224	2.9663	2	0.019773	4202	160513_QHF_FH_JSI11Kac_3	76.847	53.827			0.98832	1.0143	12.816	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71768	0.83402	NaN	1	0	Median	1.0543	1.0143	NaN	1	0	Median	0.98832	1.0615	NaN	1	0	Median	17255000	8707900	8547400	0	0	0	6040800	3442800	2598000	4830000	2509600	2320400	6384500	2755500	3629000	42087	3277	39614	256829;256830;256831	344427;344428	344427	2818		2	
QQALEVIK	1	Unmodified	927.53893	0.53893149	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.14	5					1	2			1	2	1	4	34.73	31.686	2	0.0033989	28064	160511_QHF_FH_JSI10i_1	78.516	36.864			0.93331	0.99478	17.984	7	4	Median	1.3016	1.0592	NaN	1	1	Median	0.70251	0.82685	21.294	2	2	Median	0.88709	0.87517	NaN	1	0	Median	0.94026	1.2766	14.022	3	1	Plateau	1168000000	604940000	563070000	302820000	145320000	157500000	509750000	291760000	217990000	232470000	127010000	105460000	122960000	40854000	82108000	42088	5569	39615	256832;256833;256834;256835;256836;256837;256838;256839	344429;344430;344431;344432;344433;344434;344435;344436	344431			8	
QQALTVSTDPEHRFELALQLGELK	1	Unmodified	2722.429	0.42899369	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		2	2								2	2		91.966	91.753	3;4	8.5934E-13	81737	160511_QHF_FH_JSI11i_3	105.67	98.138			0.81922	0.76923	34.428	3	2	Median	NaN	NaN	NaN	0	0	Median	0.42593	0.51853	NaN	1	1	Median	0.94052	0.88997	20.619	2	1	Median	NaN	NaN	NaN	0	0	Median	200780000	110460000	90323000	0	0	0	60161000	43754000	16407000	140620000	66705000	73916000	0	0	0	42089	1438	39616	256840;256841;256842;256843	344437;344438;344439;344440;344441	344438			5	
QQANTIFWSPQGQFVVLAGLR	0	Unmodified	2359.2437	0.24369953	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.4		1							8	2	3	2	2	95.713	88.247	2;3	0	48588	160513_QHF_FH_JSI9Kac_6	418.98	358.64			1.0481	1.1145	6.2659	9	1	Median	1.3567	1.1583	3.7492	2	0	Median	0.91435	1.0966	3.6691	3	1	Median	1.0782	1.0149	9.3225	2	0	Median	1.0543	1.1164	0.24518	2	0	Median	2451700000	1241000000	1210700000	253110000	103700000	149410000	1029500000	557660000	471880000	782420000	386990000	395430000	386640000	192630000	194010000	42090	1867	39617	256844;256845;256846;256847;256848;256849;256850;256851;256852	344442;344443;344444;344445;344446;344447;344448;344449;344450;344451;344452	344447			11	
QQAPPVR	0	Unmodified	794.43989	0.43988615	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			8.2819	7.8072	2	0.016327	5802	160511_QHF_FH_JSI10i_2	56.165	38.604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42091	2739	39618	256853	344453	344453			1	
QQAQAEPER	0	Unmodified	1055.4996	0.49958587	3259	Q7Z3C6	ATG9A	Autophagy-related protein 9A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	5.3816	4.996	2	0.0002013	3049	160511_QHF_FH_JSI12i_1	85.161	46.385			1.2623	1.7017	46.368	3	2	Plateau	2.084	1.7017	NaN	1	1	Median	1.8335	2.1882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86897	0.89078	NaN	1	0	Median	113740000	43193000	70552000	35591000	10347000	25243000	44289000	13293000	30996000	0	0	0	33865000	19553000	14312000	42092	3259	39619	256854;256855;256856;256857	344454;344455;344456;344457;344458	344454			5	
QQASASTDGVDK	1	Unmodified	1205.5524	0.5524093	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	8.1673	7.8179	2	4.4096E-06	5691	160511_QHF_FH_JSI10i_1	123.67	75.387			0.77396	0.9797	20.551	4	1	Linear	0.96138	0.78957	NaN	1	0	Median	0.7071	0.83304	NaN	1	0	Median	1.2021	1.1586	NaN	1	1	Median	1.1131	1.1522	NaN	1	0	Median	176920000	90244000	86678000	43339000	21483000	21856000	46476000	21027000	25449000	51988000	30060000	21928000	35120000	17675000	17445000	42093	1581	39620	256858;256859;256860;256861	344459;344460;344461;344462;344463	344461			5	
QQASEADAAAATFR	0	Unmodified	1435.6692	0.66917039	881	P07902	GALT	Galactose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		30.753	30.473	2	3.4146E-05	27176	160511_QHF_FH_JSI10i_1	80.245	52.263			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42094	881	39621	256862;256863	344464;344465	344465			2	
QQASHYLYVR	0	Unmodified	1263.636	0.63601977	5568	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			31.774	23.571	3	0.0026207	13424	160513_QHF_FH_JSI10Kac_6	49.466	46.144			0.86976	1.0426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86976	1.0426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9184100	4282700	4901400	0	0	0	9184100	4282700	4901400	0	0	0	0	0	0	42095	5568	39622	256864	344466	344466			1	
QQATAAEKPWDAK	2	Acetyl (K)	1484.726	0.72595699	2894	Q5JPB2	ZNF831	Zinc finger protein 831	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	48.796	39.763	2	0.010979	21727	160513_QHF_FH_JSI12Kac_3	63.408	39.422			0.71201	0.79327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71201	0.79327	NaN	1	1	Median	2072600	876340	1196300	0	0	0	0	0	0	0	0	0	2072600	876340	1196300	42096	2894	39623	256865	344467	344467	2708		1	
QQDAQEFFLHLINMVER	0	Oxidation (M)	2133.0313	0.031323489	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	93.852	85.817	3	3.6917E-05	47883	160513_QHF_FH_JSI9Kac_6	79.467	66.04			1.0995	1.3106	29.18	3	1	Median	2.1279	1.8357	NaN	1	0	Median	1.0995	1.3106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95887	1.0266	NaN	1	0	Median	285910000	131690000	154220000	49052000	16463000	32589000	75921000	29276000	46646000	0	0	0	160930000	85951000	74981000	42097	1573	39624	256866;256867;256868	344468;344469	344468		1234	2	
QQDGAAAMEMQPLK	1	Unmodified	1516.7014	0.7013985	2177	Q01814	ATP2B2	Plasma membrane calcium-transporting ATPase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			44.793	43.248	3	0.059697	35955	160511_QHF_FH_JSI10i_3	10.787	0			0.86751	0.99803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86751	0.99803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177810000	92398000	85410000	0	0	0	177810000	92398000	85410000	0	0	0	0	0	0	42098	2177	39625	256869	344470	344470			1	
QQDLNPDLILQYDIR	0	Unmodified	1842.9476	0.94757708	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		89.641	89.558	2	0.0045412	81649	160511_QHF_FH_JSI11i_1	54.7	31.464			1.0455	1.1212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0455	1.1212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9858300	4013800	5844500	0	0	0	9858300	4013800	5844500	0	0	0	0	0	0	42099	940	39626	256870;256871	344471;344472	344471			2	
QQDVFMFLTNR	0	Unmodified	1397.6762	0.67617003	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	6.86		3							2		1	2	2	83.794	80.757	2	0.0001431	71684	160511_QHF_FH_JSI12i_2	94.767	80.561			1.1634	1.3858	29.364	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0226	1.2691	NaN	1	1	Median	0.81697	0.81343	NaN	1	1	Median	1.3298	1.5153	0.18426	2	2	Median	194300000	94843000	99458000	0	0	0	60011000	36533000	23478000	37558000	18386000	19172000	96732000	39924000	56808000	42100	2194	39627	256872;256873;256874;256875;256876	344473;344474;344475;344476;344477	344474			5	
QQDVFMFLTNR	0	Oxidation (M)	1413.6711	0.67108465	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	1	0		By MS/MS			15	0								1			1			81.465	71.076	2	0.0086273	35319	160513_QHF_FH_JSI10Kac_5	52.79	39.436			0.85528	1.0083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85528	1.0083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2847700	1750600	1097100	0	0	0	2847700	1750600	1097100	0	0	0	0	0	0	42101	2194	39627	256877	344478	344478		1837	1	
QQDVLGFLEANK	1	Unmodified	1360.6987	0.69867961	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	76.752	76.585	2	0.00061886	69509	160511_QHF_FH_JSI10i_1	82.278	35.05			0.62748	0.73863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62748	0.73863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58450000	35681000	22769000	0	0	0	58450000	35681000	22769000	0	0	0	0	0	0	42102	511	39628	256878;256879	344479;344480	344480			2	
QQEAALELEELK	1	Unmodified	1399.7195	0.71947463	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	1	0	3									1	1		1	58.772	58.048	2	1.3382E-10	51568	160511_QHF_FH_JSI9i_1	141.71	111.94			1.1238	0.91352	38.657	3	0	Plateau	1.1238	0.91352	NaN	1	0	Median	1.0128	1.1881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8948	1.9555	NaN	1	0	Median	143380000	66726000	76652000	61230000	29288000	31942000	47212000	22243000	24969000	0	0	0	34936000	15194000	19741000	42103	2233	39629	256880;256881;256882	344481	344481			1	
QQEAALELEELKK	2	Unmodified	1527.8144	0.81443765	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	49.396	48.474	3	3.7632E-05	41578	160511_QHF_FH_JSI12i_2	83.633	75.909			0.97785	0.92209	48.897	3	0	Median	NaN	NaN	NaN	0	0	Median	0.38138	0.47416	NaN	1	0	Median	0.97785	0.92209	NaN	1	0	Median	1.0885	1.2303	NaN	1	0	Median	146230000	77750000	68481000	0	0	0	30370000	22962000	7408800	23476000	12165000	11311000	92385000	42624000	49761000	42104	2233	39630	256883;256884;256885	344482	344482			1	
QQEELDRK	1	Unmodified	1044.52	0.51998696	253	O15127	SCAMP2	Secretory carrier-associated membrane protein 2	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	6.0966	5.7068	2	0.002131	3345	160511_QHF_FH_JSI12i_2	82.671	39.802			1.2439	1.3055	35.837	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6561	1.682	NaN	1	0	Median	0.93425	1.0132	NaN	1	0	Median	121370000	51158000	70214000	0	0	0	0	0	0	40447000	13699000	26748000	80924000	37459000	43466000	42105	253	39631	256886;256887	344483	344483			1	
QQEELLAEENQR	0	Unmodified	1485.7059	0.70594983	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.417	27.739	2	2.0061E-14	24558	160511_QHF_FH_JSI10i_1	137.4	3.5035			1.222	1.2723	14.984	3	2	Median	1.5548	1.2723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0429	0.98621	NaN	1	1	Median	1.222	1.2843	NaN	1	1	Median	187020000	95345000	91678000	61686000	32099000	29587000	0	0	0	62842000	31872000	30970000	62495000	31374000	31121000	42106	2636	39632	256888;256889;256890;256891	344484;344485;344486;344487	344486			4	
QQEEMMR	0	Unmodified	950.39499	0.39498614	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	9.5083	9.1428	2	0.012815	6990	160511_QHF_FH_JSI10i_1	68.787	40.68			1.0154	1.0209	5.2455	4	0	Linear	1.372	1.1271	NaN	1	0	Median	0.87258	1.0288	NaN	1	0	Median	1.0919	1.0555	NaN	1	0	Median	0.94423	0.9959	NaN	1	0	Median	746910000	363620000	383290000	100480000	44597000	55879000	215380000	108670000	106710000	211760000	96912000	114850000	219290000	113440000	105850000	42107	2644	39633	256892;256893;256894;256895	344488;344489;344490	344489			3	
QQEGESRLNLVQR	0	Unmodified	1555.8067	0.80666693	761;864	P00338;P07195	LDHA;LDHB	L-lactate dehydrogenase A chain;L-lactate dehydrogenase B chain	no	no	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			25.937	24.972	3	0.00017756	21484	160511_QHF_FH_JSI9i_2	70.622	34.976			0.99557	1.0152	201.53	2	1	Median	0.28592	0.24415	NaN	1	0	Median	3.4666	4.2209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132610000	72617000	59995000	80722000	61333000	19388000	51891000	11284000	40607000	0	0	0	0	0	0	42108	761;864	39634	256896;256897	344491;344492;344493	344492			3	
QQEGFKGTFPDAR	1	Acetyl (K)	1521.7212	0.72120596	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	58.223	47.577	2	0.0031198	26813	160513_QHF_FH_JSI12Kac_4	69.979	63.29			0.86345	0.93709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86345	0.93709	NaN	1	0	Median	1832600	1028300	804330	0	0	0	0	0	0	0	0	0	1832600	1028300	804330	42109	2644	39635	256898	344494	344494	2611		1	
QQEGFKPNYMENR	1	Unmodified	1639.7413	0.74128948	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		27.152	26.634	3	0.0023393	22780	160511_QHF_FH_JSI11i_3	51.875	38.738			1.3184	1.1986	27.347	2	2	Median	1.1298	0.98784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5385	1.4543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50441000	22239000	28202000	27338000	13021000	14316000	0	0	0	23103000	9217800	13886000	0	0	0	42110	3809	39636	256899;256900;256901	344495;344496;344497	344496			3	
QQEGGIVSK	1	Unmodified	944.49271	0.49270958	5354	Q9UJY1	HSPB8	Heat shock protein beta-8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.396	9.607	2	0.00064398	7092	160511_QHF_FH_JSI9i_1	76.827	30.875			1.9074	1.5874	NaN	1	0	Median	1.9074	1.5874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142740000	51151000	91587000	142740000	51151000	91587000	0	0	0	0	0	0	0	0	0	42111	5354	39637	256902	344498;344499	344498			2	
QQEIEEK	1	Unmodified	902.43453	0.434526	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		6.5994	6.4462	2	0.0056376	4180	160511_QHF_FH_JSI11i_1	98.523	6.6169			1.2864	0.776	37.101	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.2864	1.5284	NaN	1	1	Median	1.1033	1.0477	42.455	2	2	Median	NaN	NaN	NaN	0	0	Median	161970000	75079000	86889000	0	0	0	43334000	21656000	21679000	118630000	53423000	65211000	0	0	0	42112	5065	39638	256903;256904;256905	344500;344501;344502	344500			3	
QQEIILWR	0	Unmodified	1084.6029	0.60292873	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.57	1	4					1	4	3	3	4	3	3	66.553	60.12	2	1.1098E-14	53000	160511_QHF_FH_JSI10i_2	170.3	138.99			0.9319	0.99475	18.31	13	0	Median	1.2242	1.0714	19.695	3	0	Plateau	0.76112	0.92141	16.563	4	0	Median	1.0264	1.0327	27.895	3	0	Median	1.0005	1.121	17.193	3	0	Median	655120000	331900000	323220000	122510000	52285000	70224000	158550000	92340000	66205000	229740000	110360000	119380000	144320000	76912000	67407000	42113	525	39639	256906;256907;256908;256909;256910;256911;256912;256913;256914;256915;256916;256917;256918	344503;344504;344505;344506;344507;344508;344509;344510;344511;344512;344513;344514;344515	344512			13	
QQEIVVSR	0	Unmodified	957.52434	0.52434406	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	17.492	17.131	2	0.0030036	14705	160511_QHF_FH_JSI12i_1	75.825	15.026			0.72087	0.80158	16.903	2	0	Median	NaN	NaN	NaN	0	0	Median	0.60292	0.71127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8619	0.90335	NaN	1	0	Median	536840000	295810000	241030000	0	0	0	232210000	138400000	93817000	0	0	0	304620000	157410000	147210000	42114	2665	39640	256919;256920	344516;344517	344516			2	
QQELEAVRK	1	Unmodified	1099.5986	0.59857163	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	12.223	11.705	2;3	0.013348	9119	160511_QHF_FH_JSI12i_2	34.721	19.059			0.89755	0.93308	4.0786	3	2	Median	1.0983	0.9556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89755	0.88259	NaN	1	1	Median	0.85309	0.93308	NaN	1	0	Median	160800000	74436000	86361000	56743000	23639000	33104000	0	0	0	42167000	22228000	19938000	61887000	28568000	33319000	42115	5289	39641	256921;256922;256923	344518;344519;344520	344518			3	
QQELIQK	1	Unmodified	885.49198	0.4919813	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	16.009	14.153	2	0.0011191	11852	160511_QHF_FH_JSI10i_1	124.34	40.542			0.92104	0.95833	18.317	5	1	Median	1.1839	0.95833	NaN	1	0	Median	0.92104	1.0718	NaN	1	0	Median	1.0281	1.0063	30.861	2	1	Median	0.77089	0.82513	NaN	1	0	Median	1483700000	685700000	798020000	404890000	169460000	235430000	336410000	183110000	153300000	372030000	159240000	212790000	370390000	173890000	196500000	42116	1579	39642	256924;256925;256926;256927;256928	344521;344522;344523;344524;344525;344526	344524			6	
QQELTALYQMQHLQYQQFLIQQQYAQVLAQQQK	1	Unmodified	4064.0578	0.057819596	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									3	1		2		92.69	83.49	4	1.0458E-21	46996	160513_QHF_FH_JSI11Kac_6	131.1	117.26			1.2343	1.0505	7.162	3	3	Median	1.2343	1.0505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1625	1.0947	9.5523	2	2	Median	NaN	NaN	NaN	0	0	Median	138640000	71154000	67487000	33049000	18908000	14141000	0	0	0	105590000	52246000	53346000	0	0	0	42117	3172	39643	256929;256930;256931	344527;344528;344529	344528			3	
QQELTHQEHR	0	Unmodified	1304.6222	0.62216062	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	5	3	5.0644	4.8662	2;3	3.651E-44	2484	160511_QHF_FH_JSI12i_3	232.88	184.08			0.76028	0.75795	18.995	10	3	Median	1.1302	0.99717	NaN	1	0	Median	0.56932	0.70336	11.997	2	1	Median	0.73921	0.7483	3.1272	4	2	Linear	1.0139	0.89555	11.538	3	0	Plateau	1274100000	639440000	634630000	101860000	47620000	54237000	159690000	105560000	54135000	431020000	238670000	192350000	581500000	247590000	333910000	42118	1139	39644	256932;256933;256934;256935;256936;256937;256938;256939;256940;256941;256942	344530;344531;344532;344533;344534;344535;344536;344537;344538	344538			9	
QQEMMAALTDAIQDKK	2	Unmodified	1819.8808	0.88081943	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	70.909	70.141	3	6.6043E-06	62354	160511_QHF_FH_JSI10i_2	112.28	110.41			0.74686	0.83639	19.511	5	1	Median	1.0787	0.93205	NaN	1	0	Median	0.69045	0.83639	NaN	1	0	Median	0.95017	0.99365	NaN	1	0	Median	0.65597	0.69867	21.766	2	1	Median	277280000	147610000	129670000	45285000	23118000	22167000	65386000	39982000	25403000	78364000	39737000	38628000	88249000	44778000	43472000	42119	3860	39645	256943;256944;256945;256946;256947	344539;344540;344541;344542;344543;344544;344545	344544			6	
QQENMQR	0	Unmodified	932.41341	0.4134134	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	4.7058	4.4154	2	0.0016788	2326	160511_QHF_FH_JSI12i_1	117.93	41.087			0.80964	0.91508	4.733	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74217	0.88496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88324	0.94622	NaN	1	0	Median	573950000	325480000	248470000	0	0	0	296490000	166830000	129660000	0	0	0	277460000	158650000	118810000	42120	283	39646	256948;256949	344546;344547;344548	344547			3	
QQEPIQILLIFLQK	1	Unmodified	1710.008	0.0079924964	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	99.523	91.33	2;3	9.8012E-31	51796	160513_QHF_FH_JSI11Kac_6	163.71	149.56			1.0479	1.0022	9.7258	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.69427	0.83283	NaN	1	1	Median	1.0686	1.0083	NaN	1	1	Median	0.91191	0.94533	NaN	1	1	Median	372660000	205250000	167410000	0	0	0	95842000	58556000	37286000	157400000	75897000	81499000	119420000	70797000	48626000	42121	3102	39647	256950;256951;256952;256953;256954	344549;344550;344551;344552;344553	344550			5	
QQEPVTSTSLVFGK	1	Unmodified	1519.7882	0.7882229	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	57.484	56.832	2	0.00012519	50453	160511_QHF_FH_JSI9i_1	108.9	42.604			0.88404	0.9449	9.8158	4	0	Median	1.2026	1.011	NaN	1	0	Median	0.8088	0.95251	NaN	1	0	Median	0.96628	0.93736	NaN	1	0	Median	0.78555	0.80301	NaN	1	0	Median	336970000	177540000	159430000	64141000	30106000	34035000	89923000	45035000	44888000	96735000	55690000	41045000	86169000	46709000	39460000	42122	1684	39648	256955;256956;256957;256958	344554;344555;344556;344557;344558;344559	344559			6	
QQEQADSLER	0	Unmodified	1202.5527	0.55274365	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	10.675	10.291	2	2.6779E-11	8039	160511_QHF_FH_JSI10i_1	169.65	112.48			1.0343	1.0599	8.2873	4	0	Median	1.3368	1.0995	NaN	1	0	Median	0.88338	1.0217	NaN	1	0	Median	0.97172	0.9449	NaN	1	0	Median	1.1008	1.139	NaN	1	0	Median	495100000	251560000	243540000	139520000	70038000	69480000	115800000	63936000	51865000	104580000	43469000	61108000	135210000	74120000	61088000	42123	2587	39649	256959;256960;256961;256962	344560;344561;344562;344563	344562			4	
QQEQPAATK	1	Unmodified	999.49852	0.49852324	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	5.4831	2.212	2	6.2368E-08	2983	160511_QHF_FH_JSI10i_1	141.48	107.68			0.87774	0.93746	21.6	7	0	Median	1.2451	1.0416	NaN	1	0	Median	0.81829	0.95187	14.629	2	0	Median	0.81855	0.78992	42.589	2	0	Median	0.81193	0.86429	11.493	2	0	Median	1350700000	638880000	711860000	341860000	143930000	197930000	345620000	176930000	168690000	303060000	143770000	159300000	360190000	174250000	185940000	42124	1505	39650	256963;256964;256965;256966;256967;256968;256969	344564;344565;344566;344567;344568;344569;344570;344571;344572	344569			9	
QQEQQQQQVAR	0	Unmodified	1369.6698	0.66983909	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.5976	5.2737	2	4.8702E-105	3189	160511_QHF_FH_JSI11i_1	278.16	187.09			1.0675	1.1336	6.594	4	0	Median	1.4444	1.1799	NaN	1	0	Median	0.9534	1.1174	NaN	1	0	Median	1.0258	1.0147	NaN	1	0	Median	1.111	1.1499	NaN	1	0	Median	582500000	295850000	286650000	130130000	49890000	80235000	146940000	90807000	56129000	135610000	70848000	64757000	169830000	84306000	85526000	42125	138	39651	256970;256971;256972;256973	344573;344574;344575;344576;344577;344578;344579;344580	344574			8	
QQEQQVPILEK	1	Unmodified	1338.7143	0.71432967	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	4										1	2	1	41.253	40.798	2	3.0807E-06	36707	160511_QHF_FH_JSI11i_1	110.54	94.959			1.8776	1.987	3.3817	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.7239	2.042	NaN	1	0	Median	2.1021	2.0569	NaN	1	0	Median	1.8776	1.9335	NaN	1	0	Median	278260000	94367000	183890000	0	0	0	94230000	33288000	60943000	84483000	23360000	61123000	99546000	37719000	61827000	42126	1650	39652	256974;256975;256976;256977	344581;344582;344583	344582			3	
QQETHLK	1	Unmodified	882.45593	0.45593014	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.62		4	1					2	2	2	3	1	3	7.6143	3.8218	2;3	0.0034852	2180	160511_QHF_FH_JSI11i_2	104.21	74.024			0.98004	1.0049	48.141	9	0	Median	1.61	1.3658	62.286	2	0	Median	0.6354	0.7637	78.796	3	0	Plateau	0.98004	1.0049	NaN	1	0	Median	0.95928	1.0559	13.505	3	0	Median	3084600000	1631600000	1453000000	170790000	74207000	96583000	2274800000	1240200000	1034500000	97278000	52344000	44934000	541720000	264820000	276900000	42127	1493	39653	256978;256979;256980;256981;256982;256983;256984;256985;256986	344584;344585;344586;344587;344588;344589	344584			6	
QQEVEAITLELEELKR	1	Unmodified	1927.0262	0.026221336	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1				By MS/MS	2.5	0.5		1	1										2	86.058	85.468	3	6.9728E-05	73934	160511_QHF_FH_JSI12i_2	83.891	61.416			0.90391	0.9895	105.03	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90391	0.9895	105.03	2	2	Median	81417000	43477000	37940000	0	0	0	0	0	0	0	0	0	81417000	43477000	37940000	42128	679	39654	256987;256988	344590;344591	344590			2	
QQEVEER	0	Unmodified	916.42502	0.42502394	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	5.3848	-1.7672	2	0.02871	1775	160513_QHF_FH_JSI12Kac_3	62.546	20.894			0.85075	0.92519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85075	0.92519	NaN	1	0	Median	3553700	1947200	1606400	0	0	0	0	0	0	0	0	0	3553700	1947200	1606400	42129	4449	39655	256989	344592	344592			1	
QQEVETELK	1	Unmodified	1102.5506	0.55061839	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	24.227	19.532	2	1.8942E-17	16542	160511_QHF_FH_JSI10i_1	182.76	127.23			0.91927	0.96063	14.453	10	1	Median	0.87396	0.72352	NaN	1	0	Median	0.84483	0.97616	2.8402	3	0	Plateau	1.0128	0.98535	4.0201	3	0	Median	0.96694	1.0374	19.169	3	1	Median	1327000000	685990000	641040000	323040000	149900000	173140000	318580000	181050000	137530000	344890000	185480000	159410000	340520000	169550000	170970000	42130	910	39656	256990;256991;256992;256993;256994;256995;256996;256997;256998;256999	344593;344594;344595;344596;344597;344598;344599;344600;344601;344602;344603;344604;344605;344606;344607;344608;344609;344610;344611	344601			19	
QQEVIADK	1	Unmodified	929.48181	0.48181054	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	5	5.66	4					2				1	2	2	1	13.187	10.45	2	0.025888	6874	160513_QHF_FH_JSI11Kac_3	52.482	20.127			0.96343	1.1626	25.712	6	0	Linear	1.3727	1.1066	NaN	1	0	Median	0.78091	0.9282	43.71	2	0	Median	0.85432	0.8271	4.4022	2	0	Median	1.1708	1.2531	NaN	1	0	Median	956050000	464620000	491430000	236950000	100410000	136540000	261180000	138420000	122760000	186630000	100560000	86068000	271290000	125220000	146060000	42131	2517	39657	257000;257001;257002;257003;257004;257005	344612;344613;344614	344613			1	
QQEVQLK	1	Unmodified	871.47633	0.47633123	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	13.207	12.935	2	0.011696	10502	160511_QHF_FH_JSI10i_1	60.972	20.399			0.8792	0.90203	10.607	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85168	0.83685	NaN	1	0	Median	0.90761	0.97229	NaN	1	0	Median	226910000	122480000	104430000	0	0	0	0	0	0	119640000	65125000	54511000	107270000	57351000	49923000	42132	5011	39658	257006;257007;257008	344615;344616	344616			2	
QQEVVVAGSSLPTSSK	1	Unmodified	1615.8417	0.84171503	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	2					2				1		2	1	45.781	41.995	2	5.0512E-22	36907	160511_QHF_FH_JSI9i_1	179.5	162.07			1.4528	1.2091	46.508	3	2	Plateau	1.4528	1.2091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6199	0.60464	NaN	1	1	Median	1.3693	1.4633	NaN	1	1	Median	194980000	91461000	103520000	87249000	43113000	44136000	0	0	0	1322500	796510	526020	106410000	47552000	58861000	42133	4700	39659	257009;257010;257011;257012	344617;344618;344619;344620	344620			4	
QQEYDFK	1	Unmodified	956.42396	0.42396131	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.95	19.444	2	0.009988	16647	160511_QHF_FH_JSI10i_1	76.774	50.172			1.3224	1.3995	13.87	4	0	Median	1.2968	1.0782	NaN	1	0	Median	1.2454	1.453	NaN	1	0	Median	1.439	1.3729	NaN	1	0	Median	1.3485	1.4266	NaN	1	0	Median	415460000	198520000	216930000	118780000	58950000	59832000	97475000	52114000	45361000	108120000	51068000	57054000	91076000	36391000	54685000	42134	2207	39660	257013;257014;257015;257016	344621;344622;344623	344623			3	
QQEYEEQFK	1	Unmodified	1227.5408	0.54078198	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		22.295	22.088	2	0.00018073	19226	160511_QHF_FH_JSI10i_1	104.01	77.571			1.2605	1.3607	5.4323	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1782	1.4139	NaN	1	1	Median	1.3486	1.3094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	167570000	82417000	85158000	0	0	0	78472000	37840000	40632000	89103000	44577000	44526000	0	0	0	42135	4610	39661	257017;257018	344624;344625	344625			2	
QQFDLENK	1	Unmodified	1020.4876	0.4876242	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	31.878	27.15	2	3.6318E-11	23900	160511_QHF_FH_JSI11i_1	169.06	124.61			0.95168	1.0285	21.188	8	1	Median	0.82308	0.66994	NaN	1	1	Median	0.96383	1.1267	2.6515	2	0	Median	0.94654	0.91211	24.34	3	0	Median	0.97385	1.0285	3.4097	2	0	Median	2625900000	1450800000	1175100000	623200000	328900000	294310000	835760000	498910000	336860000	628500000	310980000	317520000	538410000	312030000	226380000	42136	1460	39662	257019;257020;257021;257022;257023;257024;257025;257026	344626;344627;344628;344629;344630;344631;344632;344633;344634;344635	344627			9	
QQFHDAK	1	Unmodified	872.41407	0.41406533	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.08	4.68	1	8	2					2		4	2	4	3	5.0958	3.3151	2;3	0.0015603	2505	160511_QHF_FH_JSI11i_2	124.83	98.726			0.82268	0.89086	17.041	13	1	Median	1.1592	0.98473	15.502	4	0	Median	0.74236	0.91608	10.346	2	0	Median	0.84	0.86084	28.204	4	1	Median	0.80957	0.87809	6.9556	3	0	Median	6036800000	3195100000	2841600000	1054900000	435820000	619080000	1038900000	565280000	473590000	2650300000	1503100000	1147200000	1292700000	690940000	601770000	42137	1282	39663	257027;257028;257029;257030;257031;257032;257033;257034;257035;257036;257037;257038;257039	344636;344637;344638;344639;344640;344641;344642;344643;344644;344645;344646;344647;344648;344649;344650;344651;344652;344653	344647			18	
QQFLGHMR	0	Unmodified	1015.5022	0.50216883	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2.75	0.433		1	3							1	1	1	1	20.238	19.726	3	0.0013125	15963	160511_QHF_FH_JSI9i_3	58.981	55.409			1.4252	1.1591	30.502	4	1	Linear	1.4298	1.1953	NaN	1	0	Median	0.48573	0.59719	NaN	1	1	Median	0.71331	0.672	NaN	1	0	Median	0.75436	0.73168	NaN	1	0	Median	189680000	93156000	96528000	102280000	43094000	59184000	23657000	15061000	8596600	31095000	18840000	12255000	32654000	16161000	16493000	42138	2307	39664	257040;257041;257042;257043	344654;344655;344656	344654			3	
QQFLSLEQANK	1	Unmodified	1304.6725	0.67246486	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	48.655	47.824	2	1.4946E-13	43184	160511_QHF_FH_JSI11i_1	152.86	110.26			0.65574	0.71034	33.076	8	1	Median	0.52071	0.44816	40.629	2	0	Median	0.57043	0.68909	3.3993	2	0	Median	0.91777	0.88277	13.889	2	0	Median	0.75925	0.81284	18.168	2	1	Median	353350000	202810000	150540000	81447000	46522000	34925000	83712000	57888000	25824000	112780000	57411000	55370000	75405000	40987000	34418000	42139	3411	39665	257044;257045;257046;257047;257048;257049;257050;257051	344657;344658;344659;344660;344661;344662;344663;344664;344665	344657			7	
QQFQQQQLQMNK	1	Unmodified	1547.7515	0.75146023	1880	P56524	HDAC4	Histone deacetylase 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.899	31.564	2	3.7679E-08	28142	160511_QHF_FH_JSI10i_1	189.7	163.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11676000	11676000	0	0	0	0	11676000	11676000	0	0	0	0	0	0	0	42140	1880	39666	257052	344666	344666			1	
QQFTEEEIYK	1	Unmodified	1313.6139	0.61394692	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	40.729	40.284	2	2.6774E-07	36259	160511_QHF_FH_JSI11i_1	133.99	97.612			0.99691	1.1497	5.9278	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.97519	1.1497	NaN	1	0	Median	1.166	1.1371	NaN	1	0	Median	0.99691	1.0323	NaN	1	1	Median	374390000	200660000	173720000	0	0	0	145150000	85791000	59355000	126480000	65740000	60744000	102760000	49133000	53626000	42141	3563	39667	257053;257054;257055;257056	344667;344668;344669;344670	344667			4	
QQFVEYDK	1	Unmodified	1055.4924	0.49237523	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	29.1	26.934	2	0.00044914	23952	160511_QHF_FH_JSI12i_1	107.9	87.341			1.1199	1.0994	19.708	5	1	Median	1.188	0.96932	NaN	1	0	Median	0.66476	0.77748	NaN	1	1	Median	1.1199	1.0994	NaN	1	0	Median	1.1483	1.209	13.165	2	0	Median	905490000	447110000	458390000	223590000	85454000	138130000	304360000	168510000	135850000	184400000	107180000	77223000	193150000	85970000	107180000	42142	2524	39668	257057;257058;257059;257060;257061	344671;344672;344673;344674;344675	344672			5	
QQGASGEVYCPSGEK	1	Unmodified	1595.6886	0.68858521	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.925	18.444	2	0.0045412	15997	160511_QHF_FH_JSI12i_1	54.7	33.068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42143	3283	39669	257062	344676	344676			1	
QQGDHSLK	1	Unmodified	911.44609	0.44609374	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	3.4335	2.8716	2	0.0099623	1399	160511_QHF_FH_JSI12i_2	60.59	9.5236			0.86134	0.94763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86134	0.94763	NaN	1	0	Median	60048000	34462000	25586000	0	0	0	0	0	0	0	0	0	60048000	34462000	25586000	42144	2412	39670	257063	344677	344677			1	
QQGDLVRK	1	Unmodified	942.52468	0.52467841	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.8	5.11		6	2					2		3	2	4	1	7.5085	5.3829	2;3	0.0012561	4565	160511_QHF_FH_JSI11i_3	58.23	34.075			1.1166	1.1428	29.213	10	3	Median	1.4432	1.2325	38.172	3	2	Median	1.1722	1.4351	36.578	2	1	Median	1.0764	1.0393	21.672	4	0	Median	0.9976	1.1271	NaN	1	0	Median	1382000000	659050000	722960000	308920000	128340000	180580000	340670000	180940000	159730000	727900000	347220000	380670000	4534500	2555100	1979500	42145	1519	39671	257064;257065;257066;257067;257068;257069;257070;257071;257072;257073	344678;344679;344680;344681;344682;344683;344684;344685	344678			7	
QQGSSLSGSK	1	Unmodified	977.47779	0.47778779	2507	Q14161	GIT2	ARF GTPase-activating protein GIT2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.3558	5.0141	2	0.02195	2987	160511_QHF_FH_JSI12i_1	49.06	20.162			1.1339	1.1858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1339	1.1858	NaN	1	1	Median	48614000	24051000	24563000	0	0	0	0	0	0	0	0	0	48614000	24051000	24563000	42146	2507	39672	257074	344686	344686			1	
QQGTSVAQSGAQAPGR	0	Unmodified	1541.7546	0.75463136	4497	Q9BWE0	REPIN1	Replication initiator 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			12.601	12.363	2	1.0855E-05	10078	160511_QHF_FH_JSI10i_1	86.729	68.417			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42147	4497	39673	257075	344687	344687			1	
QQHLAFR	0	Unmodified	898.47733	0.47733428	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	12.421	12.503	2	0.030052	9598	160511_QHF_FH_JSI12i_3	52.299	7.7681			0.69209	0.7173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69209	0.7173	NaN	1	0	Median	24577000	16160000	8417300	0	0	0	0	0	0	0	0	0	24577000	16160000	8417300	42148	2795	39674	257076	344688	344688			1	
QQHQGILSR	0	Unmodified	1065.5679	0.56794021	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			9.7134	9.1252	2	0.0031447	6803	160511_QHF_FH_JSI9i_3	60.436	22.878			1.1747	1.3277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1747	1.3277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28847000	13593000	15254000	0	0	0	28847000	13593000	15254000	0	0	0	0	0	0	42149	1684	39675	257077;257078;257079	344689;344690;344691	344690			3	
QQHVIETLIGK	1	Unmodified	1264.7139	0.71393574	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.39		16	14						4	7	8	10	9	47.553	45.67	2;3	1.5795E-10	24877	160513_QHF_FH_JSI11Kac_6	127.76	116.4			0.54227	0.59075	98.486	34	34	Median	0.55191	0.46519	89.04	7	7	Median	0.54043	0.64051	92.895	8	8	Median	0.92539	0.88823	116.11	10	10	Median	0.53279	0.56755	103.37	9	9	Median	12915000000	6280000000	6634800000	1048900000	471270000	577660000	1862500000	871310000	991200000	5061400000	2550700000	2510600000	4942000000	2386700000	2555300000	42150	1630	39676	257080;257081;257082;257083;257084;257085;257086;257087;257088;257089;257090;257091;257092;257093;257094;257095;257096;257097;257098;257099;257100;257101;257102;257103;257104;257105;257106;257107;257108;257109;257110;257111;257112;257113	344692;344693;344694;344695;344696;344697;344698;344699;344700;344701;344702;344703;344704;344705;344706;344707;344708;344709;344710;344711;344712;344713;344714;344715;344716;344717;344718;344719;344720;344721;344722;344723;344724;344725;344726;344727;344728;344729	344706			38	
QQHVIETLIGKK	2	Unmodified	1392.8089	0.80889876	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			17							5	6	2	4	40.197	39.083	2;3;4	7.1907E-06	32964	160511_QHF_FH_JSI10i_3	88.552	82.829			0.33996	0.34453	43.908	6	6	Median	0.42189	0.34453	2.2281	2	2	Median	0.33996	0.40259	13.895	2	2	Median	0.19137	0.17849	NaN	1	1	Median	0.14535	0.14966	NaN	1	1	Median	944050000	655880000	288170000	332840000	201010000	131820000	308720000	213410000	95310000	116990000	94306000	22683000	185500000	147140000	38358000	42151	1630	39677	257114;257115;257116;257117;257118;257119;257120;257121;257122;257123;257124;257125;257126;257127;257128;257129;257130	344730;344731;344732;344733;344734;344735;344736;344737;344738;344739;344740;344741;344742;344743;344744;344745;344746;344747	344737			18	
QQIAEDPELTHSSSNK	1	Unmodified	1782.8384	0.83842057	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.032	22.517	3	0.017418	19842	160511_QHF_FH_JSI12i_1	35.436	16.604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42152	5394	39678	257131	344748	344748			1	
QQIAEIEK	1	Unmodified	957.51311	0.51311067	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	24.711	21.577	2	0.00018124	18965	160511_QHF_FH_JSI12i_1	122.19	73.091			1.1567	1.1969	14.759	6	0	Median	1.4727	1.2046	NaN	1	0	Median	1.0253	1.1894	NaN	1	0	Median	1.2684	1.218	12.507	2	0	Median	0.99943	1.0488	25.774	2	0	Median	730420000	318580000	411840000	185100000	75399000	109710000	198880000	90422000	108460000	165930000	78878000	87050000	180500000	73879000	106620000	42153	3101	39679	257132;257133;257134;257135;257136;257137	344749;344750;344751;344752;344753;344754;344755	344751			7	
QQIANLDK	1	Unmodified	928.49779	0.49779495	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.517	19.013	2	0.0012875	16262	160511_QHF_FH_JSI10i_1	91.516	22.816			0.88115	0.90753	36.483	4	1	Median	0.93837	0.76641	NaN	1	0	Median	0.82742	0.97526	NaN	1	0	Median	1.7721	1.7314	NaN	1	1	Median	0.82611	0.8445	NaN	1	0	Median	287810000	151210000	136590000	73530000	33314000	40216000	93627000	58215000	35411000	54984000	20508000	34477000	65667000	39177000	26490000	42154	2856	39680	257138;257139;257140;257141	344756;344757;344758;344759;344760;344761	344758			6	
QQIANLDKQAK	2	Acetyl (K)	1297.699	0.69901396	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		39.483	30.409	2	0.0056678	17500	160513_QHF_FH_JSI11Kac_3	62.823	17.662			0.17455	0.16893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17455	0.16893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2835300	2302600	532690	0	0	0	0	0	0	2835300	2302600	532690	0	0	0	42155	2856	39681	257142	344762	344762	2698		1	
QQIATEK	1	Unmodified	816.43413	0.43413207	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	6.9863	6.6506	2	0.017953	4505	160511_QHF_FH_JSI11i_1	60.682	11.092			0.85329	0.98756	6.9643	4	0	Linear	1.0552	0.86312	NaN	1	0	Median	0.8552	1.0197	NaN	1	0	Median	0.92067	0.90905	NaN	1	0	Median	0.8844	0.92739	NaN	1	0	Median	826180000	421550000	404630000	128450000	58861000	69585000	263310000	143620000	119680000	202550000	97055000	105490000	231880000	122010000	109870000	42156	432	39682	257143;257144;257145;257146	344763	344763			1	
QQIEDQQGLPK	1	Unmodified	1282.6517	0.65172941	2693	Q15646	OASL	2'-5'-oligoadenylate synthase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	25.769	25.279	2	0.00042164	21859	160511_QHF_FH_JSI9i_1	87.485	70.715			0.654	0.63131	42.293	5	4	Median	0.5242	0.42771	NaN	1	1	Median	0.43793	0.50667	NaN	1	1	Median	0.92613	0.89121	48.76	2	2	Median	0.7567	0.80913	NaN	1	0	Median	178780000	111260000	67518000	35540000	22746000	12794000	38748000	29181000	9566400	60131000	30008000	30123000	44357000	29322000	15035000	42157	2693	39683	257147;257148;257149;257150;257151	344764;344765;344766;344767;344768	344768			5	
QQIEELENHLATQANNSHITPQDLSMAMQK	1	Unmodified	3418.6246	0.62455175	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.7	79.459	4	2.9837E-27	68996	160511_QHF_FH_JSI12i_3	117.04	111.5			0.96208	1.0786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96208	1.0786	NaN	1	0	Median	73600000	35731000	37869000	0	0	0	0	0	0	0	0	0	73600000	35731000	37869000	42158	4477	39684	257152	344769;344770;344771	344770			3	
QQIESEVANLK	1	Unmodified	1257.6565	0.65648044	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.041	40.668	2	8.8114E-09	36083	160511_QHF_FH_JSI9i_1	117.53	72.365			2.1932	2.32	122.37	2	1	Median	NaN	NaN	NaN	0	0	Median	4.7794	5.5117	NaN	1	0	Median	1.0064	0.97653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252750000	99894000	152860000	0	0	0	85186000	12501000	72685000	167560000	87393000	80170000	0	0	0	42159	5261	39685	257153;257154;257155	344772;344773;344774	344774			3	
QQIESEVANLKK	2	Unmodified	1385.7514	0.75144346	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	35.452	34.115	3	0.00053046	29032	160511_QHF_FH_JSI12i_2	70.488	39.303			0.41319	0.43431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41319	0.43431	NaN	1	1	Median	13481000	8545100	4936400	0	0	0	0	0	0	0	0	0	13481000	8545100	4936400	42160	5261	39686	257156	344775	344775			1	
QQIESYPTDSILEDQSDQR	0	Unmodified	2251.024	0.024049084	2310	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	58.776	58.285	2	3.4501E-17	52623	160511_QHF_FH_JSI10i_1	216.46	189.5			0.65077	0.67816	0.093764	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59923	0.67861	NaN	1	1	Median	0.70675	0.67771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72958000	37792000	35166000	0	0	0	23147000	14337000	8809200	36011000	23455000	12556000	13801000	0	13801000	42161	2310	39687	257157;257158;257159	344776;344777;344778	344778			3	
QQIGSSAMPYK	1	Unmodified	1208.586	0.58595803	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.5	4.72	3	2					1			2		2	2	32.74	30.372	2	0.00020426	27355	160511_QHF_FH_JSI12i_1	91.658	76.398			0.79022	0.74565	35.718	6	5	Median	0.6843	0.5862	22.634	2	2	Median	NaN	NaN	NaN	0	0	Median	0.97127	0.95088	37.654	2	1	Median	0.91235	0.97255	34.302	2	2	Median	524290000	287960000	236330000	170280000	97451000	72827000	0	0	0	163010000	91264000	71742000	191010000	99245000	91761000	42162	1359	39688	257160;257161;257162;257163;257164;257165	344779;344780;344781;344782;344783;344784;344785	344781			7	
QQIGSSAMPYKR	1	Acetyl (K)	1406.6976	0.69763375	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	46.422	36.182	2	3.2286E-23	21530	160513_QHF_FH_JSI11Kac_4	168.79	149.52			0.97937	0.9915	1.5646	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83463	0.9915	NaN	1	0	Median	0.97937	0.96849	NaN	1	0	Median	0.92852	0.99765	NaN	1	0	Median	56902000	28570000	28332000	0	0	0	14615000	7945700	6669600	23574000	12199000	11375000	18712000	8425200	10287000	42163	1359	39689	257166;257167;257168	344786;344787;344788;344789	344788	1293		4	
QQIGSSAMPYKR	1	Acetyl (K);Oxidation (M)	1422.6925	0.69254837	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	1	0	1	1				By MS/MS	14	0							1						1	32.42	23.534	2	0.0090875	14231	160513_QHF_FH_JSI12Kac_4	54.608	44.376			1.0207	1.0969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0207	1.0969	NaN	1	0	Median	6099600	2682900	3416800	0	0	0	0	0	0	0	0	0	6099600	2682900	3416800	42164	1359	39689	257169	344790	344790	1293	993	1	
QQILHSEEFLSFFDHSTR	0	Unmodified	2220.06	0.05998108	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	85.578	85.501	3	0.00046802	76523	160511_QHF_FH_JSI11i_3	61.648	52.365			1.2825	1.2318	13.988	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4309	1.3599	NaN	1	1	Median	1.1495	1.1158	NaN	1	1	Median	57684000	23568000	34116000	0	0	0	0	0	0	25020000	10846000	14173000	32664000	12722000	19942000	42165	2400	39690	257170;257171	344791;344792	344791			2	
QQILLSFK	1	Unmodified	975.57532	0.57531699	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.33	1	4					2	2		1	2	2	4	67.352	60.947	2	0.0016574	52015	160511_QHF_FH_JSI12i_2	83.313	63.677			0.85289	0.91413	70.901	7	1	Median	0.86128	0.72596	NaN	1	0	Median	0.58904	0.69836	48.614	2	0	Median	0.70121	0.71046	35.646	2	1	Median	1.8559	1.9838	106.67	2	0	Median	314070000	191890000	122190000	93536000	56307000	37229000	19277000	11634000	7642700	167960000	111050000	56901000	33306000	12893000	20413000	42166	1723	39691	257172;257173;257174;257175;257176;257177;257178;257179;257180	344793;344794;344795;344796;344797;344798	344794			6	
QQILQEMR	0	Unmodified	1044.5386	0.53861391	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.646	31.257	2	0.002181	26536	160511_QHF_FH_JSI11i_2	91.069	59.308			0.51485	0.52012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51485	0.52012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70007000	39275000	30732000	0	0	0	0	0	0	70007000	39275000	30732000	0	0	0	42167	3799	39692	257181	344799	344799			1	
QQINEMHLLIQQAR	0	Unmodified	1720.9043	0.90427248	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	65.522	56.428	3	1.2135E-08	30708	160513_QHF_FH_JSI11Kac_6	118.13	98.804			0.99116	0.94637	6.9886	5	2	Median	1.0529	0.90401	6.4771	2	2	Median	0.76116	0.91375	NaN	1	0	Median	0.9833	0.98824	NaN	1	0	Median	0.99116	1.0352	NaN	1	0	Median	272330000	145090000	127240000	106980000	51746000	55232000	95116000	58178000	36937000	36509000	17700000	18809000	33724000	17467000	16257000	42168	2175	39693	257182;257183;257184;257185;257186	344800;344801;344802;344803;344804;344805;344806;344807	344801			8	
QQINEMHLLIQQAR	0	Oxidation (M)	1736.8992	0.8991871	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	1	0		By matching		By MS/MS	15.5	0.5								2	2		1		3	49.861	39.822	3	0.0070821	20777	160513_QHF_FH_JSI12Kac_6	41.092	34.363			0.9013	0.96753	21.4	4	0	Median	NaN	NaN	NaN	0	0	Median	0.5895	0.66702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92143	0.99993	7.4372	3	0	Median	20296000	11232000	9063400	0	0	0	2078900	1238000	840880	0	0	0	18217000	9994100	8222500	42169	2175	39693	257187;257188;257189;257190	344808;344809	344808		1823	1	
QQIPVFR	0	Unmodified	886.50249	0.5024864	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	42.111	41.146	2	0.0016993	36282	160511_QHF_FH_JSI10i_2	117.7	81.513			1.0025	1.0553	5.825	4	2	Median	1.2541	1.065	NaN	1	1	Median	0.78992	0.9541	NaN	1	0	Median	1.0334	1.0457	NaN	1	0	Median	0.9726	1.0897	NaN	1	1	Median	500820000	270040000	230780000	95466000	44224000	51242000	120410000	71399000	49013000	175770000	94527000	81242000	109170000	59888000	49283000	42170	4924	39694	257191;257192;257193;257194;257195;257196	344810;344811;344812;344813;344814;344815;344816;344817	344817			8	
QQIQSIQQSIER	0	Unmodified	1456.7634	0.76340513	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.86	5	4					2			2	4	3	2	41.144	38.638	2	4.4759E-16	35240	160511_QHF_FH_JSI12i_1	163.46	144.72			0.73734	0.86242	25.466	11	2	Median	0.87082	0.73282	36.136	2	0	Median	0.71666	0.84017	18.348	4	2	Median	0.88767	0.86242	44.042	3	0	Median	0.74995	0.81	11.095	2	0	Median	1225300000	637740000	587510000	158510000	63653000	94860000	526370000	298670000	227700000	258490000	119600000	138880000	281890000	155820000	126070000	42171	1861	39695	257197;257198;257199;257200;257201;257202;257203;257204;257205;257206;257207	344818;344819;344820;344821;344822;344823;344824;344825;344826;344827;344828;344829;344830;344831;344832	344822			15	
QQISLATQMVR	0	Unmodified	1273.6813	0.6812554	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.656	1	4	6							2	3	3	3	49.981	49.182	2	5.0367E-24	42476	160511_QHF_FH_JSI11i_2	182.28	121.52			1.1429	1.0842	10.266	10	5	Median	1.2234	1.0064	1.8443	2	1	Median	0.90839	1.0842	1.8894	2	1	Median	1.0818	1.1133	8.249	3	1	Plateau	1.0433	1.0536	13.979	3	2	Median	4590500000	2215700000	2374900000	623490000	302360000	321130000	787740000	426150000	361590000	2046500000	968530000	1078000000	1132800000	518650000	614180000	42172	1630	39696	257208;257209;257210;257211;257212;257213;257214;257215;257216;257217;257218	344833;344834;344835;344836;344837;344838;344839;344840;344841;344842;344843;344844;344845;344846;344847;344848;344849	344843			17	
QQISLATQMVR	0	Oxidation (M)	1289.6762	0.67617003	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.79	6.47	4	2					5	3		2	4	4	4	41.068	34.105	2	4.0271E-07	18511	160513_QHF_FH_JSI9Kac_5	108.98	88.107			0.96856	1.0327	13.269	12	4	Median	1.3405	1.1223	NaN	1	0	Median	0.8655	1.0166	11.974	4	1	Median	0.87403	0.84243	16.008	4	1	Linear	0.96423	1.0415	17.619	3	2	Median	254420000	120740000	133680000	4123300	1659100	2464200	69075000	38612000	30464000	75073000	38808000	36265000	106150000	41659000	64489000	42173	1630	39696	257219;257220;257221;257222;257223;257224;257225;257226;257227;257228;257229;257230;257231;257232	344850;344851;344852;344853;344854;344855;344856;344857;344858;344859;344860;344861;344862;344863;344864;344865;344866;344867;344868	344857		1304	19	
QQIYAAEK	1	Unmodified	949.4869	0.48689592	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		14.149	13.966	2	0.0032828	11373	160511_QHF_FH_JSI11i_1	79.713	47.758			0.53641	0.56787	22.915	2	2	Median	NaN	NaN	NaN	0	0	Median	0.41881	0.48292	NaN	1	1	Median	0.68702	0.66776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	231820000	179660000	52165000	0	0	0	85263000	64404000	20859000	146560000	115250000	31307000	0	0	0	42174	1085	39697	257233;257234	344869;344870	344869			2	
QQKKKIER	3	3 Acetyl (K)	1182.6721	0.67207093	5417	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	yes	yes	3	0	0	3				By MS/MS	13	0						1							1	26.896	19.662	2	0.028473	11677	160513_QHF_FH_JSI12Kac_3	58.676	14.868			0.83077	0.91143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83077	0.91143	NaN	1	0	Median	5006900	2543700	2463200	0	0	0	0	0	0	0	0	0	5006900	2543700	2463200	42175	5417	39698	257235	344871	344871			1	
QQKPTLSGQR	1	Unmodified	1141.6204	0.62036971	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.1	3.99		2	7						1	4	4	2		8.2062	6.9091	2;3	0.00079403	5588	160511_QHF_FH_JSI10i_2	73.499	47.94			0.91931	0.9401	12.962	8	2	Median	1.188	0.96687	6.0666	4	0	Median	0.76124	0.75764	12.457	3	2	Plateau	0.77737	0.73412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1222700000	657990000	564730000	667680000	352200000	315470000	529310000	290690000	238620000	25735000	15098000	10636000	0	0	0	42176	3218	39699	257236;257237;257238;257239;257240;257241;257242;257243;257244;257245	344872;344873;344874;344875;344876;344877;344878;344879;344880;344881	344880			10	
QQLAPYSDDLR	0	Unmodified	1304.6361	0.63607935	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.476	40.831	2	2.0908E-29	37104	160511_QHF_FH_JSI12i_1	183.67	147.09		+	0.82962	0.78218	39	4	1	Median	0.80004	0.66664	NaN	1	0	Median	0.48492	0.57129	NaN	1	0	Median	1.4368	1.3803	NaN	1	1	Median	0.8603	0.91776	NaN	1	0	Median	851010000	373530000	477490000	143340000	74170000	69166000	142650000	88695000	53959000	308060000	71788000	236270000	256960000	138870000	118090000	42177	58	39700	257246;257247;257248;257249	344882;344883;344884;344885	344883			4	
QQLEAAEK	1	Unmodified	915.46616	0.46616048	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3823	9.1393	2	0.0032389	6840	160511_QHF_FH_JSI11i_1	80.165	35.412			0.81089	0.76325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81089	0.76325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111840000	94367000	17469000	0	0	0	27539000	27539000	0	50854000	33385000	17469000	33444000	33444000	0	42178	1360	39701	257250;257251;257252;257253	344886;344887;344888;344889	344886			4	
QQLEAVNEAIK	1	Unmodified	1241.6616	0.66156582	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	40.545	38.197	2	7.1555E-13	34135	160511_QHF_FH_JSI11i_1	143.24	94.677			0.89584	0.88585	21.052	5	1	Median	0.94293	0.77801	NaN	1	0	Median	0.68174	0.79488	40.093	2	1	Median	0.89584	0.88585	NaN	1	0	Median	0.87458	0.8872	NaN	1	0	Median	780430000	401480000	378960000	157410000	77316000	80094000	216110000	120900000	95212000	229070000	111910000	117160000	177840000	91352000	86492000	42179	679	39702	257254;257255;257256;257257;257258	344890;344891;344892;344893;344894;344895;344896;344897;344898	344891			9	
QQLEELAR	0	Unmodified	985.51926	0.51925868	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	25.891	24.993	2	0.0013728	22249	160511_QHF_FH_JSI12i_1	90.37	27.824			1.1814	1.1011	3.7563	2	0	Median	1.2966	1.0722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0763	1.1307	NaN	1	0	Median	279450000	151230000	128220000	120310000	61831000	58481000	0	0	0	0	0	0	159140000	89400000	69735000	42180	1629	39703	257259;257260;257261	344899;344900;344901	344901			3	
QQLELLEEDKK	2	Unmodified	1371.7246	0.72456001	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			39.834	38.868	3	0.020847	34285	160511_QHF_FH_JSI10i_2	35.45	28.08			0.74471	0.91875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74471	0.91875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27485000	18340000	9145400	0	0	0	27485000	18340000	9145400	0	0	0	0	0	0	42181	8	39704	257262	344902	344902			1	
QQLETEK	1	Unmodified	874.43961	0.43961137	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.89	5	2				2				1	1	4	3	8.0218	5.6651	2	1.758E-08	4986	160511_QHF_FH_JSI11i_1	135.77	56.17			0.8677	0.89404	77.248	7	0	Median	1.0783	0.89404	NaN	1	0	Median	0.96637	1.1396	NaN	1	0	Median	0.84327	0.85449	7.1586	2	0	Median	0.92208	0.98743	116.41	3	0	Plateau	4929700000	2589900000	2339800000	1603900000	842160000	761700000	1637500000	898020000	739490000	75457000	34928000	40529000	1612900000	814750000	798120000	42182	1073	39705	257263;257264;257265;257266;257267;257268;257269;257270;257271	344903;344904;344905;344906;344907;344908;344909;344910;344911;344912;344913;344914	344903			12	
QQLEVELR	0	Unmodified	1013.5506	0.55055881	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	38.767	38.426	2	0.00013353	34608	160511_QHF_FH_JSI11i_1	126.24	16.764			0.80685	0.85942	1.7297	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74794	0.87	NaN	1	0	Median	0.8704	0.84897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	204420000	118640000	85779000	0	0	0	104720000	59257000	45466000	99697000	59385000	40312000	0	0	0	42183	1085	39706	257272;257273;257274	344915;344916;344917	344915			3	
QQLILAR	0	Unmodified	840.51814	0.51813647	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.42	1	4					2	3		1	4	3	2	35.825	30.47	2	0.0012382	26481	160511_QHF_FH_JSI9i_2	122.98	34.95			0.96404	1.0393	15.381	10	0	Median	1.1172	0.95235	NaN	1	0	Median	0.87852	1.0512	19.293	4	0	Median	1.0248	1.0403	18.878	3	0	Median	0.94799	1.0629	3.3051	2	0	Median	780300000	377630000	402670000	156840000	70028000	86816000	199550000	102940000	96608000	268470000	129790000	138680000	155430000	74871000	80561000	42184	1627	39707	257275;257276;257277;257278;257279;257280;257281;257282;257283;257284	344918;344919;344920;344921;344922;344923;344924;344925	344921			8	
QQLLIGAYAK	1	Unmodified	1103.6339	0.63389451	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.51	4	5	3			1	3	5	3	5	7	6	6	56.15	50.778	2	1.8494E-10	27683	160513_QHF_FH_JSI11Kac_5	136.8	95.349			1.0913	1.1181	16.163	23	3	Median	1.1997	1.0214	15.707	5	0	Median	0.83328	1.0001	11.168	7	0	Median	1.1661	1.1485	6.2392	5	1	Median	1.1375	1.2273	19.966	6	2	Median	5855700000	2743400000	3112400000	768410000	349390000	419020000	1212400000	643740000	568700000	1555800000	784960000	770840000	2319100000	965280000	1353800000	42185	4321	39708	257285;257286;257287;257288;257289;257290;257291;257292;257293;257294;257295;257296;257297;257298;257299;257300;257301;257302;257303;257304;257305;257306;257307;257308	344926;344927;344928;344929;344930;344931;344932;344933;344934;344935;344936;344937;344938;344939;344940;344941;344942;344943;344944;344945;344946;344947;344948;344949;344950;344951;344952;344953;344954;344955;344956;344957;344958;344959;344960;344961;344962;344963	344955			38	
QQLLTLR	0	Unmodified	870.5287	0.52870115	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	41.242	40.431	2	0.0092851	35621	160511_QHF_FH_JSI10i_2	79.809	34.728			1.0914	1.0731	15.442	5	0	Median	1.2426	1.0731	NaN	1	0	Median	0.80276	0.97131	NaN	1	0	Median	1.0914	1.0942	NaN	1	0	Median	1.1885	1.2445	22.472	2	0	Median	1066000000	528400000	537580000	183670000	85035000	98632000	240450000	125680000	114770000	353730000	172250000	181480000	288140000	145430000	142700000	42186	2692	39709	257309;257310;257311;257312;257313	344964;344965;344966	344966			3	
QQLNIHGLLPPSFNSQEIQVLR	0	Unmodified	2530.3656	0.36560558	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	97.904	97.888	3	0.011851	87450	160511_QHF_FH_JSI11i_3	33.45	26.09			1.0136	1.004	20.479	4	1	Median	1.3242	1.1183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78316	0.74293	NaN	1	1	Median	1.0136	1.0185	17.281	2	0	Median	126490000	67518000	58967000	23258000	12174000	11084000	0	0	0	25359000	14453000	10906000	77869000	40891000	36977000	42187	1616	39710	257314;257315;257316;257317	344967;344968;344969;344970	344967			4	
QQLPEQPFEK	1	Unmodified	1242.6245	0.62445203	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9	5.66	1					2					2	1		47.597	41.192	2	0.0011226	36370	160511_QHF_FH_JSI10i_1	78.556	51.442			0.51298	0.62745	82.113	3	3	Median	NaN	NaN	NaN	0	0	Median	0.47249	0.55092	18.395	2	2	Median	2.3196	2.2437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	281100000	177140000	103960000	0	0	0	279560000	176470000	103090000	1537500	669520	867950	0	0	0	42188	1580	39711	257318;257319;257320	344971;344972;344973	344972			3	
QQLPTFLQQMQNPDTLSAMSNPR	0	Oxidation (M)	2660.2687	0.26867	5427	Q9UMX0	UBQLN1	Ubiquilin-1	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		95.181	95.181	3	0.0048486	84827	160511_QHF_FH_JSI11i_3	36.079	28.718			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42189	5427	39712	257321	344974	344974		2655	1	
QQLPTFLQQMQNPDTLSAMSNPR	0	Unmodified	2644.2738	0.27375538	5427	Q9UMX0	UBQLN1	Ubiquilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							1	2	4	2	95.247	95.1	3	1.2693E-19	83442	160511_QHF_FH_JSI11i_2	136.56	130.79			1.0467	1.065	23.432	7	2	Median	0.86321	0.73595	NaN	1	1	Median	1.0497	1.2468	3.7158	2	0	Median	0.78405	0.77212	26.518	3	1	Plateau	1.0284	1.065	NaN	1	0	Median	321230000	165730000	155500000	55330000	32203000	23127000	131070000	62732000	68340000	111970000	59332000	52639000	22859000	11468000	11392000	42190	5427	39712	257322;257323;257324;257325;257326;257327;257328;257329;257330	344975;344976;344977;344978;344979;344980;344981;344982;344983	344982			7	
QQLQALSEPQPR	0	Unmodified	1393.7314	0.73137672	3592	Q8NBJ4	GOLM1	Golgi membrane protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.554	33.967	2	0.01197	30778	160511_QHF_FH_JSI12i_1	55.353	34.354			1.0707	1.14	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0707	1.14	NaN	1	1	Median	23441000	12218000	11224000	0	0	0	0	0	0	0	0	0	23441000	12218000	11224000	42191	3592	39713	257331	344984	344984			1	
QQLQQVPGLLHR	0	Unmodified	1415.7997	0.79973106	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.44	0.497		5	4							2	5		2	45.938	44.983	2;3	5.868E-07	39633	160511_QHF_FH_JSI10i_2	106.68	81.297			0.73585	0.82438	19.638	8	3	Median	1.0344	0.88788	6.0915	2	0	Median	0.7144	0.84227	21.88	4	2	Median	NaN	NaN	NaN	0	0	Median	0.68137	0.68583	4.8907	2	1	Median	707680000	346100000	361580000	155170000	55897000	99276000	383020000	202580000	180430000	0	0	0	169490000	87619000	81870000	42192	2509	39714	257332;257333;257334;257335;257336;257337;257338;257339;257340	344985;344986;344987;344988;344989;344990;344991;344992;344993;344994	344992			9	
QQLQTTR	0	Unmodified	873.46683	0.46682918	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.56	3	4				1	2			1	2	3	4	6.9039	4.4389	2	0.0019041	2998	160513_QHF_FH_JSI11Kac_4	104.75	77.785			0.79842	0.82019	22.258	10	3	Median	0.96528	0.82955	NaN	1	0	Median	0.67642	0.81221	26.883	2	1	Median	0.57302	0.56093	37.459	3	1	Plateau	0.7061	0.7753	16.715	4	1	Median	2038800000	1241300000	797530000	55830000	28515000	27315000	644770000	400580000	244190000	606060000	375770000	230290000	732180000	436440000	295740000	42193	5426	39715	257341;257342;257343;257344;257345;257346;257347;257348;257349;257350	344995;344996;344997;344998;344999;345000;345001;345002;345003;345004	345000			10	
QQLSAEELDAQLDAYNAR	0	Unmodified	2033.9654	0.96541199	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.526	69.034	2;3	0	62873	160511_QHF_FH_JSI12i_1	453.65	414.87			1.019	1.0585	5.228	7	0	Median	1.2714	1.0259	NaN	1	0	Median	0.93596	1.1082	6.483	2	0	Median	1.1097	1.0864	6.8388	2	0	Median	0.98714	1.0413	3.6702	2	0	Median	1927500000	938730000	988750000	176170000	73445000	102730000	600390000	305810000	294580000	698460000	328490000	369970000	452450000	230980000	221470000	42194	3337	39716	257351;257352;257353;257354;257355;257356;257357;257358	345005;345006;345007;345008;345009;345010;345011;345012;345013;345014;345015;345016;345017;345018;345019;345020;345021;345022;345023;345024	345013			20	
QQLSSEQVSR	0	Unmodified	1160.5786	0.57856447	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	12.689	12.034	2	2.4523E-09	9876	160511_QHF_FH_JSI12i_1	128.86	58.859			1.087	1.0031	36.655	2	0	Median	1.5726	1.2999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75135	0.77408	NaN	1	0	Median	93082000	41311000	51771000	46212000	17065000	29147000	0	0	0	0	0	0	46869000	24246000	22623000	42195	5058	39717	257359;257360	345025;345026;345027	345026			3	
QQLSSLITDLQSSISNLSQAK	1	Unmodified	2260.1911	0.19105483	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			101.94	101.88	3	3.4046E-18	90440	160511_QHF_FH_JSI10i_2	140.63	123.06			0.64065	0.76461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64065	0.76461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64062000	33291000	30771000	0	0	0	64062000	33291000	30771000	0	0	0	0	0	0	42196	2587	39718	257361	345028	345028			1	
QQLTGHSK	1	Unmodified	897.46683	0.46682918	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.4	6.05			2					2	1	1		3	1	3.6721	-2.5738	2;3	0.004658	1263	160513_QHF_FH_JSI9Kac_5	52.126	35.615			0.68819	0.64671	38.405	3	1	Median	1.4633	1.2108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62991	0.62432	4.983	2	1	Median	NaN	NaN	NaN	0	0	Median	57159000	34432000	22728000	10112000	4338300	5773700	0	0	0	47047000	30094000	16954000	0	0	0	42197	5616	39719	257362;257363;257364;257365;257366	345029;345030;345031;345032	345030			4	
QQLVASHLEK	1	Unmodified	1151.6299	0.62987176	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	13.2	5.01		1						3	2	2		2	2	28.149	20.283	2;3	8.7574E-08	16930	160511_QHF_FH_JSI12i_2	122.96	87.018			0.9724	1.2319	43.589	6	2	Plateau	1.1341	0.92835	13.111	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83659	0.82681	14.439	2	1	Median	0.59001	0.65743	88.803	2	1	Median	76029000	39483000	36545000	11056000	4927900	6127900	0	0	0	11287000	5669800	5617100	53686000	28886000	24800000	42198	2441	39720	257367;257368;257369;257370;257371;257372	345033;345034;345035;345036;345037;345038;345039;345040;345041	345033			9	
QQLVDKHSTGGVGDK	2	Acetyl (K)	1609.806	0.80599822	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		33.406	24.167	3	0.02547	15130	160513_QHF_FH_JSI11Kac_4	42.947	32.895			1.745	1.7354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.745	1.7354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8608500	4047300	4561200	0	0	0	0	0	0	8608500	4047300	4561200	0	0	0	42199	1167	39721	257373	345042	345042	1026		1	
QQMENYPK	1	Oxidation (M)	1052.4597	0.45969489	918	P08962	CD63	CD63 antigen	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2					2	3	2	10.035	7.7565	2	0.0016616	5650	160511_QHF_FH_JSI12i_1	93.992	78.35			0.96524	0.97148	45.815	7	1	Median	NaN	NaN	NaN	0	0	Median	0.72632	0.86132	17.02	2	0	Median	1.0591	1.0454	50.884	3	0	Median	1.3205	1.3806	64.884	2	1	Median	724100000	348210000	375890000	0	0	0	180190000	108750000	71446000	258040000	115900000	142140000	285870000	123570000	162300000	42200	918	39722	257374;257375;257376;257377;257378;257379;257380	345043;345044;345045;345046;345047;345048	345045		500	6	
QQMENYPK	1	Unmodified	1036.4648	0.46478027	918	P08962	CD63	CD63 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	16.263	12.361	2	2.1351E-15	10752	160511_QHF_FH_JSI12i_1	180.93	137.68			1.0303	1.0188	11.478	8	0	Median	1.1063	0.87682	NaN	1	0	Median	0.78259	0.91756	4.0256	2	0	Median	1.102	1.0577	10.669	3	0	Median	0.96263	1.0386	4.1078	2	0	Median	3788100000	2018300000	1769800000	994340000	528760000	465570000	976560000	551680000	424880000	987220000	483510000	503710000	829970000	454370000	375600000	42201	918	39722	257381;257382;257383;257384;257385;257386;257387;257388	345049;345050;345051;345052;345053;345054;345055;345056;345057;345058;345059;345060;345061	345050			13	
QQMFEFDTK	1	Unmodified	1172.5172	0.51720977	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	51.82	51.094	2	1.5662E-06	45497	160511_QHF_FH_JSI9i_1	131.5	110.6			1.4101	1.3455	25.904	5	3	Median	1.4747	1.2112	NaN	1	0	Median	1.8362	2.1642	NaN	1	0	Median	1.2517	1.2199	13.865	2	2	Median	1.4101	1.4443	NaN	1	1	Median	577840000	257840000	320000000	108320000	54514000	53802000	16805000	5804000	11001000	335610000	145690000	189920000	117120000	51830000	65286000	42202	5663	39723	257389;257390;257391;257392;257393	345062;345063;345064;345065;345066	345066			5	
QQMFENK	1	Unmodified	923.4171	0.41710179	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.197	13.767	2	0.016256	11519	160511_QHF_FH_JSI12i_1	63.48	22.534			0.79319	0.82561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79319	0.82561	NaN	1	1	Median	63672000	35519000	28153000	0	0	0	0	0	0	0	0	0	63672000	35519000	28153000	42203	4673	39724	257394	345067	345067			1	
QQMLENQMEVR	0	Unmodified	1404.649	0.648969	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	37.316	36.588	2	0.0072707	33148	160511_QHF_FH_JSI12i_1	51.162	44.033			0.83869	0.84684	10.621	3	2	Median	1.0609	0.84684	NaN	1	1	Median	0.83869	0.97461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77311	0.79142	NaN	1	0	Median	100650000	53623000	47022000	25192000	11945000	13248000	48790000	27531000	21258000	0	0	0	26664000	14147000	12517000	42204	2162	39725	257395;257396;257397	345068;345069;345070	345068			3	
QQMQDFFLAHK	1	Unmodified	1391.6656	0.66560534	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		54.932	54.112	3	5.1704E-05	46812	160511_QHF_FH_JSI11i_2	65.842	60.182			0.99516	1.0275	5.5891	3	0	Plateau	1.0871	0.92547	NaN	1	0	Median	0.83698	1.009	NaN	1	0	Median	0.99516	1.0275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	189110000	88740000	100370000	39243000	18217000	21026000	56939000	25751000	31187000	92928000	44771000	48157000	0	0	0	42205	4521	39726	257398;257399;257400	345071;345072;345073;345074	345072			3	
QQMSAELWK	1	Unmodified	1119.5383	0.53827956	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.952	44.561	2	0.039161	38132	160511_QHF_FH_JSI12i_2	46.39	29.476			0.69005	0.74907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69005	0.74907	NaN	1	1	Median	24861000	12954000	11907000	0	0	0	0	0	0	0	0	0	24861000	12954000	11907000	42206	5330	39727	257401	345075	345075			1	
QQNELAELHANLAR	0	Unmodified	1605.8223	0.82231699	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		46.869	46.025	3	4.9238E-05	39578	160511_QHF_FH_JSI11i_2	89.466	79.27			0.97444	0.98383	5.4543	3	0	Median	1.1533	1.0061	NaN	1	0	Median	0.74901	0.90704	NaN	1	0	Median	0.97444	0.98383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154190000	80888000	73302000	42184000	20241000	21943000	42158000	21917000	20241000	69848000	38730000	31118000	0	0	0	42207	2587	39728	257402;257403;257404	345076;345077;345078;345079;345080;345081	345078			6	
QQNQEITDQLEEEK	1	Unmodified	1730.7959	0.79588705	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			37.058	36.697	2	7.189E-13	32853	160511_QHF_FH_JSI10i_1	122.42	104.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42208	2270	39729	257405	345082	345082			1	
QQNQELQEQLR	0	Unmodified	1412.7008	0.70080487	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.574	23.03	2	2.9929E-23	20322	160511_QHF_FH_JSI12i_1	176.48	158.17			0.78884	0.84683	18.335	4	0	Median	1.3848	1.1515	NaN	1	0	Median	0.72647	0.84996	NaN	1	0	Median	0.76642	0.74943	NaN	1	0	Median	0.81193	0.8437	NaN	1	0	Median	255730000	138530000	117210000	66940000	28228000	38712000	68598000	39219000	29379000	56081000	36079000	20002000	64116000	35002000	29114000	42209	2587	39730	257406;257407;257408;257409	345083;345084;345085;345086;345087	345084			5	
QQNVQSASQDEK	1	Unmodified	1360.6219	0.62188585	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				6.7016	6.0592	2	2.4073E-14	3790	160511_QHF_FH_JSI9i_1	136.02	116.71			1.0365	0.82565	NaN	1	1	Median	1.0365	0.82565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25443000	12730000	12712000	25443000	12730000	12712000	0	0	0	0	0	0	0	0	0	42210	2793	39731	257410;257411	345088;345089	345089			2	
QQNYQQASSFPPHEELLK	1	Unmodified	2143.0334	0.033431979	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.897	51.941	3	0.010901	44887	160511_QHF_FH_JSI11i_2	39.585	29.445			0.88813	0.92128	5.2646	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8917	0.88761	NaN	1	1	Median	0.88457	0.95622	NaN	1	1	Median	59233000	30578000	28656000	0	0	0	0	0	0	33541000	17849000	15691000	25693000	12728000	12965000	42211	3328	39732	257412;257413	345090;345091	345091			2	
QQPDTEAVLNGK	1	Unmodified	1298.6466	0.64664404	1816	P54105	CLNS1A	Methylosome subunit pICln	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	30.756	30.157	2	0.00031754	26953	160511_QHF_FH_JSI10i_1	91.658	51.657			0.64388	0.58617	8.7258	4	0	Median	0.6884	0.57133	NaN	1	0	Median	0.47078	0.55778	NaN	1	0	Median	0.61929	0.6014	NaN	1	0	Median	0.66944	0.6785	NaN	1	0	Median	475080000	292460000	182620000	94827000	55656000	39172000	123650000	74393000	49257000	124560000	81930000	42628000	132040000	80477000	51567000	42212	1816	39733	257414;257415;257416;257417;257418	345092;345093;345094;345095;345096	345094			5	
QQPDTELEIQQK	1	Unmodified	1455.7205	0.72053726	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	33.328	32.977	2	5.6123E-06	29821	160511_QHF_FH_JSI12i_1	119.34	100.24			1.2077	1.2459	7.9138	3	2	Median	NaN	NaN	NaN	0	0	Median	0.9265	1.0975	NaN	1	1	Median	1.2696	1.2459	NaN	1	0	Median	1.2077	1.2692	NaN	1	1	Median	538190000	248800000	289390000	0	0	0	191370000	98949000	92424000	201210000	88013000	113200000	145610000	61839000	83770000	42213	4983	39734	257419;257420;257421;257422;257423	345097;345098;345099;345100;345101;345102	345099			6	
QQPEVEVTHETLQR	0	Unmodified	1692.8431	0.84311201	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								2	1	1		32.329	31.474	3	3.7768E-05	26747	160511_QHF_FH_JSI11i_2	90.259	60.768			0.63105	0.61769	41.859	4	4	Median	0.80938	0.71186	63.994	2	2	Median	0.40384	0.49616	NaN	1	1	Median	0.7734	0.76899	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70823000	40106000	30717000	26065000	13534000	12532000	14532000	9348100	5183900	30226000	17225000	13001000	0	0	0	42214	416	39735	257424;257425;257426;257427	345103;345104;345105;345106	345105			4	
QQPNPGNELCYK	1	Unmodified	1446.6562	0.65616287	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	31.337	30.958	2	0.00016805	27953	160511_QHF_FH_JSI12i_1	81.338	37.028			1.2182	1.2702	39.267	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.53167	0.599	NaN	1	1	Median	0.74645	0.71619	NaN	1	1	Median	1.2182	1.2702	NaN	1	0	Median	108350000	65167000	43184000	0	0	0	30456000	22063000	8393000	36735000	22540000	14195000	41159000	20564000	20596000	42215	2509	39736	257428;257429;257430;257431	345107;345108;345109;345110	345109			4	
QQPPAVQFVPPLPEWK	1	Unmodified	1859.9934	0.99340506	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	97.437	97.305	2;3	0.00086924	88386	160511_QHF_FH_JSI12i_1	53.169	44.005			1.1105	1.2596	35.851	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0956	1.2596	NaN	1	0	Median	2.5285	2.4341	NaN	1	1	Median	1.3825	1.3703	NaN	1	0	Median	38088000	15355000	22733000	0	0	0	17368000	7983100	9384500	7350900	1428400	5922500	13369000	5943500	7425700	42216	412	39737	257432;257433;257434	345111;345112	345112			2	
QQPPDLVEFAVEYFTR	0	Unmodified	1937.9523	0.95232811	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.66	102.53	2;3	5.8198E-05	88470	160511_QHF_FH_JSI12i_2	74.12	57.626			1.031	1.0853	14.637	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2167	1.2036	NaN	1	1	Median	0.87367	0.97855	NaN	1	0	Median	67555000	32389000	35166000	0	0	0	0	0	0	33239000	14606000	18633000	34316000	17783000	16533000	42217	1043	39738	257435;257436	345113;345114	345113			2	
QQPPEPEWIGDGESTSPSDK	1	Unmodified	2182.9655	0.96547157	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	53.261	52.535	2;3	3.2013E-07	47192	160511_QHF_FH_JSI10i_1	118.67	115.72			1.1179	1.0848	13.488	9	2	Median	1.2276	1.0055	19.282	3	2	Median	0.97791	1.1353	14.192	2	0	Median	1.1749	1.1439	7.4944	2	0	Median	1.0958	1.1249	7.6026	2	0	Median	636890000	311610000	325270000	197290000	96006000	101280000	141680000	70694000	70988000	131090000	62711000	68381000	166830000	82203000	84625000	42218	3634	39739	257437;257438;257439;257440;257441;257442;257443;257444;257445;257446	345115;345116;345117;345118;345119;345120;345121;345122;345123;345124;345125;345126;345127;345128;345129;345130;345131;345132	345124			18	
QQPTQFINPETPGYVGFANLPNQVHR	0	Unmodified	2951.4678	0.46783882	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	1	3	1	83.465	83.064	3	7.0123E-26	73154	160511_QHF_FH_JSI9i_2	135.76	129.04			1.0474	1.0072	11.455	6	0	Median	1.1699	0.99777	NaN	1	0	Median	0.74592	0.90701	NaN	1	0	Median	1.055	1.0166	16.329	3	0	Median	1.0399	1.0364	NaN	1	0	Median	640610000	303360000	337250000	138200000	59967000	78232000	139830000	75150000	64682000	259340000	116000000	143340000	103240000	52241000	50999000	42219	2603	39740	257447;257448;257449;257450;257451;257452	345133;345134;345135;345136;345137;345138;345139;345140;345141;345142;345143;345144;345145	345139			13	
QQPTQFINPETPGYVGFANLPNQVHRK	1	Unmodified	3079.5628	0.56280183	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			76.645	75.218	4	1.8481E-07	63003	160511_QHF_FH_JSI10i_3	62.237	59.984			0.92245	0.90906	7.9302	2	0	Median	1.1556	0.9615	NaN	1	0	Median	0.73636	0.85949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119230000	63686000	55542000	74201000	35302000	38898000	45028000	28383000	16644000	0	0	0	0	0	0	42220	2603	39741	257453;257454	345146;345147;345148;345149;345150;345151	345147			6	
QQQAATSESSQSEASVR	0	Unmodified	1792.8187	0.81874776	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.507	10.258	2	3.753E-30	7897	160511_QHF_FH_JSI11i_1	185.59	158.92			0.95514	1.1294	16.219	3	1	Median	NaN	NaN	NaN	0	0	Median	0.95514	1.1294	NaN	1	1	Median	1.398	1.3317	NaN	1	0	Median	0.92461	0.96278	NaN	1	0	Median	112940000	62734000	50205000	0	0	0	36415000	24266000	12149000	30360000	13511000	16849000	46164000	24957000	21207000	42221	3290	39742	257455;257456;257457	345152;345153;345154;345155	345152			4	
QQQDEAYLASLR	0	Unmodified	1420.6947	0.69465686	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.909	46.229	2	3.1558E-05	41747	160511_QHF_FH_JSI11i_1	131.42	108.78			1.0597	0.99655	8.1315	4	0	Median	1.1452	0.94737	NaN	1	0	Median	0.78521	0.9109	NaN	1	0	Median	1.1098	1.0812	NaN	1	0	Median	1.0118	1.0483	NaN	1	0	Median	415230000	210210000	205020000	85189000	43238000	41951000	150690000	86672000	64023000	99455000	45672000	53783000	79890000	34630000	45259000	42222	4013	39743	257458;257459;257460;257461	345156;345157;345158;345159;345160	345157			5	
QQQDQVDR	0	Unmodified	1015.4683	0.46828574	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.73	13	3				2				11	3	3	1	4.0843	2.8328	2	5.6307E-31	2292	160511_QHF_FH_JSI10i_1	210.37	128.74			1.2909	1.1274	7.7838	17	0	Median	1.3907	1.1298	8.2366	10	0	Median	0.92955	1.089	7.24	3	0	Median	1.2081	1.1783	7.3342	3	0	Median	1.0265	1.089	NaN	1	0	Median	3455600000	1664300000	1791300000	600410000	241470000	358950000	1007600000	520890000	486710000	1019800000	494110000	525680000	827790000	407850000	419940000	42223	2644	39744	257462;257463;257464;257465;257466;257467;257468;257469;257470;257471;257472;257473;257474;257475;257476;257477;257478;257479	345161;345162;345163;345164;345165;345166;345167;345168;345169;345170;345171;345172;345173;345174;345175;345176;345177;345178;345179;345180	345167			20	
QQQDYFHSILGPGNIK	1	Unmodified	1843.9217	0.92169668	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.69	66.115	3	0.012357	57705	160511_QHF_FH_JSI11i_2	42.818	30.026			0.47998	0.49269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47998	0.49269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	97040000	59802000	37239000	0	0	0	0	0	0	97040000	59802000	37239000	0	0	0	42224	1501	39745	257480	345181	345181			1	
QQQEEDEQETAALLEEARK	1	Unmodified	2244.0506	0.050598185	4493	Q9BW85	CCDC94	Coiled-coil domain-containing protein 94	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	53.438	52.945	3	8.5754E-06	47899	160511_QHF_FH_JSI11i_1	81.665	62.373			1.1733	1.2561	14.288	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0135	1.1937	NaN	1	0	Median	1.6334	1.5621	NaN	1	0	Median	1.1733	1.2561	NaN	1	0	Median	138170000	67177000	70996000	0	0	0	46536000	26161000	20375000	47412000	18808000	28603000	44225000	22207000	22018000	42225	4493	39746	257481;257482;257483	345182;345183;345184;345185;345186	345183			5	
QQQEEEDLNLEDRGEETVLGGGTR	0	Unmodified	2701.2427	0.24270907	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	57.241	56.581	3	0.0017283	51431	160511_QHF_FH_JSI12i_1	40.669	33.476			1.081	1.0845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.081	1.0845	NaN	1	0	Median	27389000	15981000	11408000	0	0	0	0	0	0	0	0	0	27389000	15981000	11408000	42226	2943	39747	257484	345187	345187			1	
QQQEELEAEHGTGDKPAAPR	1	Unmodified	2190.0301	0.030137515	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.57	0.495		3	4							1	1	4	1	18.219	17.954	3;4	2.5215E-07	14964	160511_QHF_FH_JSI11i_3	97.271	88.329			0.99428	1.0069	22.285	7	2	Median	1.1702	1.0069	NaN	1	0	Median	0.67255	0.8176	NaN	1	0	Median	0.98522	0.96392	29.23	4	2	Median	1.0638	1.0786	NaN	1	0	Median	240930000	113560000	127370000	44194000	21684000	22510000	36873000	20680000	16193000	123260000	58336000	64925000	36604000	12861000	23743000	42227	2479	39748	257485;257486;257487;257488;257489;257490;257491	345188;345189;345190;345191;345192;345193;345194;345195	345189			8	
QQQEGLSHLISIIK	1	Unmodified	1592.8886	0.88860564	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		4	2							1		2	3	74.634	73.985	2;3	2.1234E-05	64057	160511_QHF_FH_JSI12i_3	112.96	99.827			1.0672	1.0033	20.997	6	0	Median	1.0225	0.89285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96575	0.99828	17.189	2	0	Median	1.1621	1.1827	26.69	3	0	Median	256590000	128190000	128400000	18958000	10583000	8375000	0	0	0	101010000	45936000	55074000	136620000	71672000	64950000	42228	3258	39749	257492;257493;257494;257495;257496;257497	345196;345197;345198;345199;345200	345199			5	
QQQEILAAK	1	Unmodified	1027.5662	0.56620887	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	19.733	19.229	2	0.00016092	16096	160511_QHF_FH_JSI9i_1	103.87	71.402			0.85636	0.87705	15.89	4	0	Median	1.428	1.1876	NaN	1	0	Median	0.75367	0.88572	NaN	1	0	Median	0.88727	0.84523	NaN	1	0	Median	0.82653	0.86846	NaN	1	0	Median	493950000	270780000	223170000	118700000	54307000	64395000	146110000	81617000	64498000	106240000	67592000	38644000	122900000	67262000	55636000	42229	3905	39750	257498;257499;257500;257501	345201;345202;345203	345203			3	
QQQEKEMK	2	Acetyl (K);Oxidation (M)	1105.5074	0.50737336	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	5.2262	-2.012	2	0.008112	1482	160513_QHF_FH_JSI11Kac_2	65.252	43.121			0.82067	0.86174	18.581	6	0	Median	NaN	NaN	NaN	0	0	Median	0.89866	1.0674	14.135	2	0	Median	0.84386	0.82744	5.9026	2	0	Median	0.7156	0.76497	16.689	2	0	Median	30229000	16340000	13889000	0	0	0	8882100	4765400	4116700	8523700	4815000	3708600	12823000	6759200	6063800	42230	5380	39751	257502;257503;257504;257505;257506;257507	345204;345205;345206;345207;345208;345209	345204	3375	2646	6	
QQQEKEMK	2	Acetyl (K)	1089.5125	0.51245874	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		10.05	2.6943	2	0.02558	4056	160513_QHF_FH_JSI11Kac_3	59.245	35.817			0.95957	1.0349	31.077	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.2892	NaN	1	0	Median	0.83974	0.83073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10077000	5852800	4224600	0	0	0	4877500	2768200	2109300	5199900	3084600	2115300	0	0	0	42231	5380	39751	257508;257509	345210	345210	3375		1	
QQQELDGSLK	1	Unmodified	1144.5724	0.57241646	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.31	19.801	2	2.6028E-06	16764	160511_QHF_FH_JSI9i_1	119.21	85.036			0.99608	0.59232	28.077	4	3	Linear	1.2374	1.0118	NaN	1	1	Median	0.92083	1.0719	NaN	1	1	Median	1.0775	1.0136	NaN	1	1	Median	0.55649	0.59013	NaN	1	0	Median	213900000	113980000	99918000	54776000	29107000	25669000	48370000	27132000	21238000	50824000	28160000	22664000	59926000	29579000	30347000	42232	4673	39752	257510;257511;257512;257513	345211;345212;345213;345214	345214			4	
QQQELFAK	1	Unmodified	990.51345	0.51344502	2173	Q01658	DR1	Protein Dr1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.979	23.452	2	0.0069632	20804	160511_QHF_FH_JSI12i_1	60.972	36.817			1.1696	1.1852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1696	1.1852	NaN	1	0	Median	129310000	72707000	56606000	0	0	0	0	0	0	0	0	0	129310000	72707000	56606000	42233	2173	39753	257514	345215	345215			1	
QQQELHLALK	1	Unmodified	1206.6721	0.67207093	4058	Q96EU6	RRP36	Ribosomal RNA processing protein 36 homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				24.381	23.061	4	0.04927	18605	160511_QHF_FH_JSI9i_3	25.386	14.556			1.7954	1.4808	NaN	1	0	Median	1.7954	1.4808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28648000	8406300	20241000	28648000	8406300	20241000	0	0	0	0	0	0	0	0	0	42234	4058	39754	257515	345216	345216			0	
QQQEMEEDQR	0	Unmodified	1319.5412	0.54119269	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.5432	6.9008	2	0.0022045	4493	160511_QHF_FH_JSI9i_1	64.711	54.188			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42235	2229	39755	257516	345217	345217			1	
QQQFENLDQQLRK	1	Unmodified	1673.8485	0.84853174	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	2	1	40.572	39.748	2;3	5.7563E-07	34996	160511_QHF_FH_JSI10i_2	121.56	94.149			0.11463	0.16568	24.387	3	3	Plateau	0.19411	0.16568	NaN	1	1	Median	0.15231	0.18932	NaN	1	1	Median	0.11463	0.11797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1299700000	1104500000	195210000	331720000	272160000	59565000	401170000	339020000	62155000	566820000	493330000	73494000	0	0	0	42236	444	39756	257517;257518;257519;257520;257521;257522	345218;345219;345220;345221;345222;345223	345221			6	
QQQFNVQALVAVGDHASK	1	Unmodified	1938.9912	0.99117323	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	69.012	68.515	3	2.6894E-07	60855	160511_QHF_FH_JSI11i_3	105.9	96.801			0.90136	0.92954	9.7149	4	0	Median	0.93309	0.79486	NaN	1	0	Median	0.80446	0.97081	NaN	1	0	Median	1.0168	0.97957	NaN	1	0	Median	0.87071	0.89002	NaN	1	0	Median	800270000	401900000	398370000	157330000	75419000	81916000	116720000	66367000	50349000	235520000	112320000	123200000	290700000	147790000	142910000	42237	1064	39757	257523;257524;257525;257526	345224;345225;345226;345227;345228	345224			4	
QQQLLNEENLR	0	Unmodified	1383.7106	0.71064128	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		38.474	38.142	2	2.9578E-09	34218	160511_QHF_FH_JSI10i_1	125.97	56.546			0.76538	0.82346	1.2658	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71502	0.83086	NaN	1	1	Median	0.81929	0.81612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	215000000	115470000	99521000	0	0	0	84161000	52949000	31212000	130830000	62525000	68309000	0	0	0	42238	2957;5035	39758	257527;257528;257529	345229;345230;345231	345231			3	
QQQLLNEENLRK	1	Unmodified	1511.8056	0.80560429	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	30.25	30.218	3	0.0024313	25435	160511_QHF_FH_JSI12i_3	56.139	38.938			0.36799	0.36196	23.309	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32349	0.30696	NaN	1	1	Median	0.41861	0.42682	NaN	1	1	Median	300980000	243380000	57609000	0	0	0	0	0	0	203900000	170630000	33264000	97088000	72743000	24345000	42239	2957;5035	39759	257530;257531	345232;345233	345233			2	
QQQLTAMK	1	Unmodified	946.4906	0.49060109	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	0	By MS/MS				1	0	1									1				16.231	15.211	2	0.0083119	12467	160511_QHF_FH_JSI9i_1	67.169	40.207			1.5806	1.2931	NaN	1	1	Median	1.5806	1.2931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61651000	25866000	35785000	61651000	25866000	35785000	0	0	0	0	0	0	0	0	0	42240	1436;1445	39760	257532	345234	345234			1	
QQQPPPETFDFK	1	Unmodified	1460.6936	0.69359423	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	48.919	48.292	2	4.344E-05	43583	160511_QHF_FH_JSI11i_1	101.39	85.256			0.70282	0.74041	17.956	5	3	Median	0.70282	0.58198	NaN	1	1	Median	0.62492	0.74041	NaN	1	1	Median	0.80022	0.77693	20.301	2	0	Median	0.83071	0.86777	NaN	1	1	Median	487490000	323390000	164100000	159820000	117130000	42698000	95051000	65090000	29961000	153610000	95710000	57898000	79003000	45460000	33543000	42241	2516	39761	257533;257534;257535;257536;257537	345235;345236;345237;345238;345239;345240;345241;345242;345243	345235			9	
QQQQQQNDVVK	1	Unmodified	1341.6637	0.66369108	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	8.0463	6.3042	2	1.3525E-87	5245	160511_QHF_FH_JSI10i_1	254.57	195.65			0.94547	0.95407	15.303	5	0	Median	0.88391	0.72486	NaN	1	0	Median	0.78816	0.94473	NaN	1	0	Median	1.0601	1.0224	9.776	2	0	Median	0.94547	0.99001	NaN	1	0	Median	1013800000	535470000	478350000	313440000	177350000	136090000	293630000	170590000	123040000	208980000	95659000	113320000	197760000	91871000	105890000	42242	2649	39762	257538;257539;257540;257541;257542	345244;345245;345246;345247;345248;345249;345250;345251;345252;345253	345249			10	
QQQQQQQHQQPNR	0	Unmodified	1674.7935	0.79347648	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			4.5668	4.1664	3	1.5808E-65	2133	160511_QHF_FH_JSI10i_2	173.72	153.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42243	3172	39763	257543;257544	345254;345255	345255			2	
QQQTVFIHPNSSLFEQQPR	0	Unmodified	2283.1396	0.13962838	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	62.926	62.548	3	1.457E-05	55674	160511_QHF_FH_JSI11i_3	76.027	70.498			0.92869	0.92435	3.5298	3	0	Median	NaN	NaN	NaN	0	0	Median	0.75463	0.92018	NaN	1	0	Median	1.0334	0.98029	NaN	1	0	Median	0.92869	0.92435	NaN	1	0	Median	196210000	99241000	96973000	0	0	0	65776000	29613000	36163000	54144000	28169000	25974000	76295000	41459000	34835000	42244	398	39764	257545;257546;257547;257548	345256;345257;345258;345259	345256			3	
QQQVDIPLR	0	Unmodified	1095.6037	0.60365701	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		41.163	40.697	2	0.002543	35903	160511_QHF_FH_JSI10i_2	64.42	38.613			0.22659	0.2258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22659	0.2258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53898000	44864000	9033900	0	0	0	0	0	0	53898000	44864000	9033900	0	0	0	42245	5153	39765	257549;257550	345260;345261	345261			2	
QQQVEAVELEAK	1	Unmodified	1370.7042	0.70415892	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.043	36.43	2	4.2033E-16	32768	160511_QHF_FH_JSI11i_1	163.83	123.1			1.0138	1.0141	10.247	4	0	Median	1.0453	0.86225	NaN	1	0	Median	0.85602	1.0064	NaN	1	0	Median	1.1292	1.1005	NaN	1	0	Median	0.98325	1.022	NaN	1	0	Median	445350000	213210000	232140000	99764000	47751000	52014000	108100000	56757000	51341000	142700000	67194000	75508000	94781000	41507000	53273000	42246	3328	39766	257551;257552;257553;257554	345262;345263;345264;345265;345266;345267;345268;345269	345263			8	
QQQWLLYLSNSGYLK	1	Unmodified	1839.9519	0.95193418	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	3	2	88.177	80.178	2;3	2.3837E-123	46053	160513_QHF_FH_JSI10Kac_6	299.81	266.27			0.87468	0.84571	64.121	9	5	Median	0.9265	0.79951	7.9446	2	0	Median	0.64804	0.76979	107.92	3	3	Median	0.9403	0.90783	7.8431	2	1	Median	0.80591	0.85092	22.165	2	1	Median	1434000000	912740000	521290000	222650000	113740000	108910000	795860000	577860000	218000000	207730000	108370000	99351000	207810000	112770000	95033000	42247	3862	39767	257555;257556;257557;257558;257559;257560;257561;257562;257563;257564	345270;345271;345272;345273;345274;345275;345276;345277;345278;345279;345280;345281;345282	345282			13	
QQREDITQSAQHALR	0	Unmodified	1779.8976	0.8976072	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							2	3			25.011	23.958	3;4	7.455E-07	20677	160511_QHF_FH_JSI9i_2	131.08	108.72			1.3761	1.2322	25.016	4	1	Median	1.434	1.2322	0.074756	2	0	Median	0.97204	1.191	43.195	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202740000	85801000	116940000	94278000	39701000	54577000	108460000	46100000	62359000	0	0	0	0	0	0	42248	2325	39768	257565;257566;257567;257568;257569	345283;345284;345285;345286;345287;345288	345286			6	
QQRPVPESQLLPGQR	0	Unmodified	1731.938	0.93801545	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			38.785	37.302	3	0.024891	30462	160511_QHF_FH_JSI9i_3	65.472	56.19			1.0771	1.0473	10.276	2	0	Median	1.3571	1.1263	NaN	1	0	Median	0.85484	0.97392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30380000	14072000	16308000	16520000	7198200	9321400	13860000	6873800	6986700	0	0	0	0	0	0	42249	885	39769	257570;257571	345289	345289			0	
QQSALDESNTYQLPDGSR	0	Unmodified	2007.9134	0.91337642	4731	Q9H568	ACTL8	Actin-like protein 8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.823	46.598	2	8.159E-05	41450	160511_QHF_FH_JSI9i_1	76.588	58.779			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42250	4731	39770	257572	345290	345290			1	
QQSAQSQVSTTAENK	1	Unmodified	1605.7594	0.75944196	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					1	1	1	3	12.039	10.52	2;3	6.6998E-117	8598	160511_QHF_FH_JSI10i_1	276.41	266.52			0.89073	0.87443	9.4135	6	2	Median	1.0774	0.8902	NaN	1	0	Median	0.68806	0.80542	NaN	1	0	Median	0.94261	0.9104	NaN	1	0	Median	0.91268	0.93961	13.218	3	2	Plateau	382860000	185860000	196990000	80070000	30507000	49563000	92488000	53945000	38543000	77894000	40947000	36947000	132410000	60465000	71942000	42251	4623	39771	257573;257574;257575;257576;257577;257578	345291;345292;345293;345294;345295;345296;345297;345298;345299	345295			9	
QQSAVPLDEETHAGEDVAVFAR	0	Unmodified	2368.1295	0.12951721	831	P05187	ALPP	Alkaline phosphatase, placental type	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		64.703	64.26	3	0.00015725	58434	160511_QHF_FH_JSI11i_1	45.069	36.468			1.8835	1.8327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8835	1.8327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14633000	1328400	13305000	0	0	0	0	0	0	14633000	1328400	13305000	0	0	0	42252	831	39772	257579	345300	345300			1	
QQSEEDLLLQDFSR	0	Unmodified	1706.8111	0.81114318	5439	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	76.341	75.858	2;3	2.2898E-156	69058	160511_QHF_FH_JSI11i_1	308.37	281.67			1.0605	1.0445	6.9636	8	0	Median	1.2503	1.0364	1.5357	2	0	Median	0.78816	0.92705	5.8588	2	0	Median	1.0792	1.0502	1.2128	2	0	Median	1.0415	1.0938	0.95882	2	0	Median	2932500000	1455200000	1477300000	571760000	247770000	324000000	908830000	509150000	399690000	743280000	359250000	384030000	708650000	339050000	369600000	42253	5439	39773	257580;257581;257582;257583;257584;257585;257586;257587	345301;345302;345303;345304;345305;345306;345307;345308;345309;345310;345311;345312	345302			12	
QQSELQSQVR	0	Unmodified	1201.6051	0.60511357	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			2	4	3	4	16.394	12.491	2	1.1253E-14	11047	160511_QHF_FH_JSI12i_1	179.8	119.02			0.92721	0.96822	13.618	13	0	Median	1.2623	1.0739	14.652	2	0	Median	0.79395	0.94427	4.4735	4	0	Median	0.96214	0.93594	8.0926	3	0	Median	0.95506	1.0223	21.431	4	0	Median	2733800000	1305000000	1428800000	610890000	278890000	332000000	650880000	346090000	304790000	713100000	344590000	368510000	758900000	335380000	423520000	42254	2579	39774	257588;257589;257590;257591;257592;257593;257594;257595;257596;257597;257598;257599;257600	345313;345314;345315;345316;345317;345318;345319;345320;345321;345322;345323;345324;345325;345326;345327;345328;345329;345330;345331;345332;345333;345334	345318			22	
QQSHFAMMHGGTGFAGIDSSSPEVK	1	2 Oxidation (M)	2637.1588	0.1587852	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	2	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			4						2	1		2	3	43.331	40.107	3;4	1.7167E-10	35232	160511_QHF_FH_JSI11i_3	84.946	83.892			0.89068	0.86291	27.03	6	1	Median	1.106	0.93985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83796	0.78767	7.3075	2	0	Median	0.88959	0.89774	40.324	3	1	Median	251560000	138650000	112900000	18503000	9441400	9061400	0	0	0	139280000	73397000	65881000	93776000	55815000	37961000	42255	2656	39775	257601;257602;257603;257604;257605;257606	345335;345336;345337;345338;345339;345340;345341;345342;345343;345344;345345;345346;345347	345336		2077;2078	13	
QQSHFAMMHGGTGFAGIDSSSPEVK	1	Oxidation (M)	2621.1639	0.16387058	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			10						6	2	5	5	4	51.802	47.499	3;4	8.5862E-17	42160	160511_QHF_FH_JSI11i_3	121.94	118.21			0.9671	0.98836	14.752	14	1	Median	1.1951	1.0249	3.6444	2	0	Median	0.92327	1.0347	20.822	5	0	Median	0.9671	0.93474	5.5707	4	1	Median	0.8769	0.91121	10.952	3	0	Plateau	1006600000	497470000	509100000	74920000	34011000	40910000	263650000	126790000	136850000	391000000	196370000	194630000	277000000	140290000	136710000	42256	2656	39775	257607;257608;257609;257610;257611;257612;257613;257614;257615;257616;257617;257618;257619;257620;257621;257622	345348;345349;345350;345351;345352;345353;345354;345355;345356;345357;345358;345359;345360;345361;345362;345363;345364;345365;345366;345367;345368;345369;345370;345371;345372;345373;345374;345375;345376;345377;345378;345379;345380;345381	345353		2077;2078	33	
QQSHFAMMHGGTGFAGIDSSSPEVK	1	Unmodified	2605.169	0.16895596	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.43		6	7						7	5	6	4	5	59.006	55.267	3;4	2.9295E-108	49026	160511_QHF_FH_JSI11i_3	266.28	264.53			0.92699	0.93101	13.721	20	0	Median	1.1783	1.0127	16.687	5	0	Median	0.89747	1.0362	8.8266	6	0	Median	0.93325	0.8698	5.8378	4	0	Median	0.81245	0.84389	14.092	5	0	Median	8007300000	4086800000	3920500000	812940000	372710000	440220000	2006600000	1084700000	921900000	3244300000	1510500000	1733700000	1943500000	1118900000	824620000	42257	2656	39775	257623;257624;257625;257626;257627;257628;257629;257630;257631;257632;257633;257634;257635;257636;257637;257638;257639;257640;257641;257642	345382;345383;345384;345385;345386;345387;345388;345389;345390;345391;345392;345393;345394;345395;345396;345397;345398;345399;345400;345401;345402;345403;345404;345405;345406;345407;345408;345409;345410;345411;345412;345413;345414;345415;345416;345417;345418;345419;345420;345421;345422;345423;345424;345425;345426;345427;345428;345429;345430;345431;345432;345433;345434;345435;345436;345437	345388			56	
QQSIAGSADSKPIDVSR	1	Unmodified	1757.8908	0.89079049	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.74	3.89	10	7					2			4	5	5	5	31.035	29.366	2;3	4.3283E-09	26034	160511_QHF_FH_JSI10i_1	143.93	116.6			1.0296	1.1063	31.137	18	7	Median	1.4499	1.2655	41.604	4	2	Median	0.92914	1.0925	38.439	5	2	Median	1.0146	0.99418	19.794	5	1	Median	0.99279	1.0877	15.644	4	2	Median	1495500000	759050000	736420000	241340000	102650000	138680000	358460000	187670000	170790000	407350000	211520000	195830000	488330000	257200000	231120000	42258	2323	39776	257643;257644;257645;257646;257647;257648;257649;257650;257651;257652;257653;257654;257655;257656;257657;257658;257659;257660;257661	345438;345439;345440;345441;345442;345443;345444;345445;345446;345447;345448;345449;345450;345451;345452;345453;345454;345455;345456;345457;345458;345459;345460;345461;345462;345463;345464;345465;345466	345451			29	
QQSLPPPK	1	Unmodified	893.49707	0.49706667	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.955	11.826	2	0.015199	9449	160511_QHF_FH_JSI11i_1	49.418	33.786			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42259	5463	39777	257662	345467	345467			1	
QQSNEHLR	0	Unmodified	1010.4894	0.48935553	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		2.3617	2.1721	2;3	0.053423	987	160511_QHF_FH_JSI11i_2	14.207	8.7251			1.389	1.3675	4.7707	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.389	1.3675	4.7707	2	0	Median	NaN	NaN	NaN	0	0	Median	91072000	35374000	55697000	0	0	0	0	0	0	91072000	35374000	55697000	0	0	0	42260	361	39778	257663;257664	345468;345469	345468			2	
QQSNEHLRR	0	Unmodified	1166.5905	0.59046656	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				3.2491	2.7685	3	0.047441	1431	160511_QHF_FH_JSI9i_3	19.243	11.98			0.41306	0.34577	NaN	1	0	Median	0.41306	0.34577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14747000	9217000	5530200	14747000	9217000	5530200	0	0	0	0	0	0	0	0	0	42261	361	39779	257665	345470	345470			1	
QQSQLSK	1	Unmodified	817.42938	0.42938104	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.1113	4.7696	2	0.012555	2734	160511_QHF_FH_JSI12i_1	69.198	35.459			0.72816	0.75615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72816	0.75615	NaN	1	0	Median	110470000	58792000	51678000	0	0	0	0	0	0	0	0	0	110470000	58792000	51678000	42262	2712	39780	257666	345471	345471			1	
QQSQQIATAK	1	Unmodified	1101.5778	0.57783619	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	8.1667	7.7399	2	0.00012983	5663	160511_QHF_FH_JSI12i_1	84.054	49.965			1.1127	1.0065	22.358	3	0	Plateau	1.0118	0.83856	NaN	1	0	Median	0.68542	0.80491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1432	1.2081	NaN	1	0	Median	127510000	65198000	62317000	44294000	18925000	25369000	37870000	19823000	18047000	0	0	0	45351000	26449000	18901000	42263	4974	39781	257667;257668;257669	345472;345473;345474	345472			2	
QQSTSSDRVSQTPESLDFLK	1	Unmodified	2252.0921	0.092069069	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	59.71	58.809	3	4.944E-05	50990	160511_QHF_FH_JSI11i_2	62.002	52.441			0.88328	1.0962	17.153	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88328	1.0962	NaN	1	0	Median	1.3119	1.2991	NaN	1	0	Median	0.86288	0.92181	NaN	1	0	Median	152560000	72265000	80291000	0	0	0	61026000	33524000	27502000	50392000	17847000	32545000	41138000	20894000	20244000	42264	2332	39782	257670;257671;257672	345475;345476;345477;345478	345476			4	
QQTDIAVNWAGGLHHAK	1	Unmodified	1844.9282	0.92817905	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	44.351	44.256	3;4	3.9699E-07	37833	160511_QHF_FH_JSI12i_3	121.82	103.45			1.3413	1.2389	9.9929	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.352	1.2671	1.1447	3	1	Plateau	1.0452	1.0454	1.7145	2	0	Median	584900000	238170000	346730000	0	0	0	0	0	0	253560000	95269000	158290000	331340000	142900000	188440000	42265	2438	39783	257673;257674;257675;257676;257677	345479;345480;345481;345482;345483;345484;345485	345482			7	
QQTDMAVNWAGGLHHAK	1	Unmodified	1862.8846	0.88459967	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7								3	4	4	40.723	40.405	2;3;4	2.6499E-10	34334	160511_QHF_FH_JSI12i_3	158.4	135.17			1.2177	1.2455	24.416	9	5	Median	NaN	NaN	NaN	0	0	Median	0.77066	0.93844	16.125	2	1	Median	1.6386	1.5297	24.11	4	2	Median	1.2177	1.2455	14.138	3	2	Median	1986700000	916370000	1070300000	0	0	0	128610000	75844000	52763000	607280000	265730000	341560000	1250800000	574800000	676000000	42266	3882	39784	257678;257679;257680;257681;257682;257683;257684;257685;257686;257687;257688	345486;345487;345488;345489;345490;345491;345492;345493;345494;345495;345496;345497;345498;345499	345499			14	
QQTDMAVNWAGGLHHAKK	2	Acetyl (K)	2032.9901	0.99012738	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		54.539	44.811	3;4	0.00073253	24288	160513_QHF_FH_JSI11Kac_6	60.528	51.709			0.27234	0.26762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27234	0.26762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23194000	18462000	4732300	0	0	0	0	0	0	23194000	18462000	4732300	0	0	0	42267	3882	39785	257689;257690	345500;345501	345500	2972		2	
QQTLEAEEAK	1	Unmodified	1145.5564	0.55643205	2749	Q16643	DBN1	Drebrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.706	13.269	2	4.2612E-05	11024	160511_QHF_FH_JSI12i_1	94.363	81.326			0.90216	0.86398	20.061	4	1	Median	0.97626	0.83103	NaN	1	0	Median	0.75725	0.85868	NaN	1	0	Median	1.334	1.2716	NaN	1	1	Median	0.83368	0.86931	NaN	1	0	Median	141800000	72497000	69308000	32445000	16287000	16158000	31795000	20031000	11764000	39097000	17042000	22055000	38468000	19136000	19332000	42268	2749	39786	257691;257692;257693;257694	345502;345503;345504;345505;345506	345503			5	
QQTLTAILTILHFSPEEK	1	Unmodified	2068.1205	0.12045607	4009	Q96CN9	GCC1	GRIP and coiled-coil domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		95.079	87.519	3	5.2527E-07	48838	160513_QHF_FH_JSI11Kac_6	104.06	90.015			1.0045	1.0536	3.3835	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93306	1.0791	NaN	1	0	Median	1.0814	1.0287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105390000	48861000	56532000	0	0	0	56086000	30501000	25586000	49307000	18361000	30947000	0	0	0	42269	4009	39787	257695;257696	345507;345508	345507			2	
QQTNNQTEVVK	1	Unmodified	1287.6419	0.64189301	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3548	8.9893	2	3.1512E-13	6949	160511_QHF_FH_JSI12i_1	150.04	115.11			0.76243	0.78687	27.922	4	0	Median	0.76457	0.62816	NaN	1	0	Median	0.6648	0.77478	NaN	1	0	Median	1.2387	1.2227	NaN	1	0	Median	0.7603	0.79915	NaN	1	0	Median	489810000	269980000	219830000	109140000	61607000	47530000	105710000	56867000	48848000	136370000	69890000	66475000	138590000	81617000	56973000	42270	2880	39788	257697;257698;257699;257700	345509;345510;345511;345512	345510			4	
QQTPPGLCPLAGNSVHEDKK	2	Unmodified	2175.0743	0.074250936	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		36.337	36.337	4	0.0007187	31787	160511_QHF_FH_JSI11i_3	43.696	34.877			0.68757	0.64769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68757	0.64769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37659000	18272000	19387000	0	0	0	0	0	0	37659000	18272000	19387000	0	0	0	42271	5576	39789	257701	345513;345514	345514			2	
QQTQHAVEGDCDIHVLK	1	Unmodified	1976.9374	0.9374231	55	CON__P12763			yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									1	3	30.493	29.808	3;4	2.0801E-05	24704	160511_QHF_FH_JSI12i_3	89.846	76.419		+	1.0046	1.0558	31.2	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.0558	31.2	2	1	Median	58527000	23418000	35109000	0	0	0	0	0	0	0	0	0	58527000	23418000	35109000	42272	55	39790	257702;257703;257704;257705	345515;345516;345517;345518;345519	345519			5	
QQTSSRPPASVGELSSSGLGDPR	0	Unmodified	2312.1357	0.13566522	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1	By MS/MS	By matching			2	0		2								1	1			45.319	44.309	3	0.02476	38724	160511_QHF_FH_JSI9i_2	26.849	3.287			0.94038	0.96077	27.271	2	0	Median	1.3457	1.1651	NaN	1	0	Median	0.65713	0.79227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91963000	44774000	47189000	48947000	21181000	27766000	43016000	23593000	19423000	0	0	0	0	0	0	42273	5466	39791	257706;257707	345520	345520			1	
QQTTDNNPPMK	1	Unmodified	1272.5768	0.57684991	4779	Q9H871	RMND5A	Protein RMD5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.9074	9.5236	2	5.7198E-05	7105	160511_QHF_FH_JSI9i_1	94.309	85.446			1.0963	1.0575	2.1874	3	0	Median	1.3009	1.0653	NaN	1	0	Median	0.87432	1.0225	NaN	1	0	Median	1.0963	1.0575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108020000	51723000	56296000	38489000	15352000	23137000	40922000	25098000	15824000	28609000	11273000	17335000	0	0	0	42274	4779	39792	257708;257709;257710;257711	345521;345522;345523;345524;345525	345525			5	
QQTTLTEWYSAQENSFKPESQR	1	Unmodified	2657.2358	0.23577319	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			65.967	65.131	3	2.4579E-05	57779	160511_QHF_FH_JSI10i_2	63.454	47.948			0.42391	0.4995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42391	0.4995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16237000	11377000	4859900	0	0	0	16237000	11377000	4859900	0	0	0	0	0	0	42275	4750	39793	257712	345526	345526			1	
QQTTVPQK	1	Unmodified	928.49779	0.49779495	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	7.9946	7.6075	2	0.0015998	5540	160511_QHF_FH_JSI12i_1	87.323	42.241			1.1676	1.1888	13.182	3	0	Median	1.1536	0.94627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2109	1.1891	NaN	1	0	Median	1.1676	1.1888	NaN	1	0	Median	338260000	167590000	170670000	84531000	43318000	41213000	0	0	0	120980000	64331000	56654000	132740000	59941000	72802000	42276	4538	39794	257713;257714;257715	345527;345528;345529;345530	345529			4	
QQTTVPQKPR	1	Acetyl (K)	1223.6622	0.66223452	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	30.238	21.878	2	0.0026495	13035	160513_QHF_FH_JSI12Kac_3	78.334	60.023			0.80829	0.90601	4.8185	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77666	0.90601	NaN	1	0	Median	0.86501	0.8406	NaN	1	0	Median	0.8412	0.91971	NaN	1	0	Median	16486000	8873600	7612300	0	0	0	5859700	3371100	2488700	4944200	2635400	2308800	5682000	2867200	2814900	42277	4538	39795	257716;257717;257718	345531;345532;345533	345532	3183		3	
QQVADEDEIWK	1	Unmodified	1359.6307	0.63065962	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	44.933	44.446	2	2.9082E-08	40353	160511_QHF_FH_JSI12i_1	126.71	108.84			1.4935	1.4534	22.922	3	2	Median	NaN	NaN	NaN	0	0	Median	1.5807	1.8912	NaN	1	1	Median	1.4935	1.4534	NaN	1	1	Median	1.1728	1.1979	NaN	1	0	Median	250140000	117090000	133050000	0	0	0	77511000	33584000	43927000	86924000	46973000	39951000	85704000	36528000	49175000	42278	5646	39796	257719;257720;257721;257722	345534;345535;345536;345537;345538;345539	345536			6	
QQVAFYGQTLGQAQAHSQEQ	0	Unmodified	2218.0403	0.04030827	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	3	2	52.343	51.717	2;3	5.2237E-81	46838	160511_QHF_FH_JSI11i_1	210.14	198.16			0.89157	0.87757	19.256	6	6	Median	1.13	0.91228	NaN	1	1	Median	0.73936	0.83853	NaN	1	1	Median	1.0485	0.99746	37.14	2	2	Median	0.8858	0.94694	16.244	2	2	Median	187830000	104890000	82936000	18889000	5905800	12983000	22464000	16162000	6301900	63497000	36351000	27146000	82980000	46475000	36504000	42279	4118	39797	257723;257724;257725;257726;257727;257728;257729	345540;345541;345542;345543;345544;345545;345546	345542			7	
QQVAPTDDETGK	1	Unmodified	1287.5943	0.59427411	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.5	5.5	1				1							1	1	14.479	10.751	2	6.5859E-05	9816	160511_QHF_FH_JSI12i_1	106.62	76.951			1.1521	1.1474	25.483	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0035	0.95824	NaN	1	0	Median	1.3226	1.374	NaN	1	1	Median	121250000	40140000	81114000	0	0	0	0	0	0	2113400	1104100	1009300	119140000	39036000	80104000	42280	2470	39798	257730;257731	345547;345548;345549	345549			3	
QQVASLETNDPILGFQATNER	0	Unmodified	2330.1503	0.15025265	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.032	76.574	2	2.8631E-102	69365	160511_QHF_FH_JSI10i_1	264.3	244.7			1.1482	1.1407	13.064	3	0	Plateau	1.7746	1.4494	NaN	1	0	Median	1.0358	1.1748	NaN	1	0	Median	1.1482	1.1407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66115000	25352000	40763000	16813000	5531300	11282000	22470000	10792000	11679000	26831000	9028900	17802000	0	0	0	42281	4225	39799	257732;257733;257734;257735	345550;345551;345552;345553;345554;345555;345556;345557	345554			8	
QQVASLIGADPR	0	Unmodified	1253.6728	0.67279921	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.49	43.268	2	0.00064634	38430	160511_QHF_FH_JSI9i_1	81.525	28.358			1.4626	1.2252	NaN	1	1	Median	1.4626	1.2252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78825000	36188000	42636000	78825000	36188000	42636000	0	0	0	0	0	0	0	0	0	42282	5712	39800	257736	345558	345558			1	
QQVEGTAQEAVSAAGAAAQQVVDQATEAGQK	1	Unmodified	3040.4697	0.46974889	2719	Q15847	ADIRF	Adipogenesis regulatory factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	100.96	100.87	3	6.3526E-59	91434	160511_QHF_FH_JSI12i_1	195.23	189.07			0.85013	0.82651	28.559	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0792	1.2867	NaN	1	1	Median	0.85013	0.82651	NaN	1	1	Median	0.72205	0.75434	NaN	1	0	Median	219590000	100550000	119040000	0	0	0	76905000	26937000	49968000	52386000	20768000	31618000	90295000	52841000	37454000	42283	2719	39801	257737;257738;257739	345559;345560;345561	345560			3	
QQVEQSSASQTGIK	1	Unmodified	1489.7372	0.73724996	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		14.134	13.969	2	1.6907E-06	11561	160511_QHF_FH_JSI10i_1	160.52	139.15			0.86189	1.0116	7.673	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.86189	1.0116	NaN	1	0	Median	0.98066	0.95896	9.9359	2	2	Median	NaN	NaN	NaN	0	0	Median	389570000	195350000	194220000	0	0	0	146510000	74692000	71822000	243050000	120650000	122400000	0	0	0	42284	4714	39802	257740;257741;257742	345562;345563;345564	345564			3	
QQVLKNVR	1	Acetyl (K)	1025.5982	0.5981777	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.097	22.912	2	0.0030575	14483	160513_QHF_FH_JSI11Kac_4	93.561	52.536			0.2831	0.27762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2831	0.27762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14329000	10817000	3512600	0	0	0	0	0	0	14329000	10817000	3512600	0	0	0	42285	3749	39803	257743	345565	345565	2928		1	
QQVLLLYR	0	Unmodified	1031.6128	0.61276513	4998	Q9NU23	LYRM2	LYR motif-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			63.709	55.448	2	0.029193	30494	160513_QHF_FH_JSI10Kac_6	60.709	45.072			0.53641	0.61965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53641	0.61965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14476000	10647000	3828900	0	0	0	14476000	10647000	3828900	0	0	0	0	0	0	42286	4998	39804	257744	345566	345566			1	
QQVLPLDSIYK	1	Unmodified	1302.7184	0.71835242	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.201	68.596	2	0.035665	62419	160511_QHF_FH_JSI12i_1	46.334	28.708			0.52942	0.5503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52942	0.5503	NaN	1	1	Median	19438000	12798000	6639500	0	0	0	0	0	0	0	0	0	19438000	12798000	6639500	42287	28	39805	257745	345567	345567			1	
QQVMDEVIK	1	Unmodified	1088.5536	0.55359527	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				39.857	38.645	2	0.01474	34203	160511_QHF_FH_JSI9i_1	45.738	30.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42288	3970	39806	257746	345568	345568			1	
QQVPFAKPLPTFAK	2	Acetyl (K)	1612.8977	0.89771377	4163	Q96L91	EP400	E1A-binding protein p400	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							3	3			2	4		83.56	73.021	2;3	0.022201	36300	160513_QHF_FH_JSI10Kac_5	48.004	33.031			1.0817	0.98354	9.0029	5	0	Linear	NaN	NaN	NaN	0	0	Median	0.85232	0.98354	NaN	1	0	Median	1.1234	1.0207	10.374	4	0	Linear	NaN	NaN	NaN	0	0	Median	20092000	10112000	9979300	0	0	0	2075500	1334700	740800	18016000	8777600	9238500	0	0	0	42289	4163	39807	257747;257748;257749;257750;257751;257752	345569;345570;345571;345572	345572	3065		3	
QQVPSEDSMEK	1	Unmodified	1276.5605	0.56053115	661	O95235	KIF20A	Kinesin-like protein KIF20A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				21.231	20.047	2	0.01032	16994	160511_QHF_FH_JSI9i_1	47.198	25.112			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42290	661	39808	257753	345573	345573			1	
QQVPSGESAILDR	0	Unmodified	1398.7103	0.71030693	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.87	4	2	1			3	2			2	5	3	2	42.111	37.298	2;3	6.1195E-06	36580	160511_QHF_FH_JSI11i_1	140.31	122.45			0.97822	1.0385	11.707	11	0	Median	1.422	1.1544	NaN	1	0	Median	0.85017	0.99508	17.062	5	0	Median	1.0649	1.0385	8.2025	3	0	Plateau	0.97199	1.0502	3.1243	2	0	Median	3506700000	1811300000	1695400000	636610000	287910000	348700000	1114900000	593170000	521780000	797650000	446740000	350910000	957510000	483520000	473980000	42291	939	39809	257754;257755;257756;257757;257758;257759;257760;257761;257762;257763;257764;257765	345574;345575;345576;345577;345578;345579;345580;345581;345582;345583;345584;345585;345586;345587;345588;345589;345590	345575			17	
QQVQVVGLQEHLVNSADDVIK	1	Unmodified	2318.223	0.22302366	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	76.83	75.988	3	2.7133E-05	66726	160511_QHF_FH_JSI11i_2	73.722	66.1			1.3342	1.4296	11.26	4	0	Median	1.3817	1.1594	NaN	1	0	Median	1.1682	1.4492	NaN	1	0	Median	1.454	1.4822	NaN	1	0	Median	1.2884	1.4103	NaN	1	0	Median	234640000	114970000	119670000	50033000	20044000	29988000	69105000	41621000	27484000	57432000	22167000	35266000	58069000	31141000	26928000	42292	4300	39810	257766;257767;257768;257769	345591;345592	345592			0	
QQVQVVGLQER	0	Unmodified	1282.6993	0.69934831	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.219	36.787	2	0.0051933	33264	160511_QHF_FH_JSI12i_1	53.683	34.412			0.82826	0.82347	31.513	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68561	0.65898	NaN	1	1	Median	1.0006	1.029	NaN	1	0	Median	113700000	57907000	55790000	0	0	0	0	0	0	61711000	34198000	27513000	51986000	23709000	28277000	42293	95	39811	257770;257771	345593;345594	345594			2	
QQVSGWTPAHVR	0	Unmodified	1364.6949	0.69493163	2085	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			29.193	27.867	3	0.011325	23126	160511_QHF_FH_JSI10i_3	33.273	20.136			0.84836	0.95006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84836	0.95006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21843000	11006000	10837000	0	0	0	21843000	11006000	10837000	0	0	0	0	0	0	42294	2085	39812	257772	345595;345596	345595			2	
QQVSLLK	1	Unmodified	814.49125	0.49125301	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	3	3	1	31.291	28.47	2	0.010355	25147	160511_QHF_FH_JSI10i_1	75.189	30.468			0.91443	1.0135	14.519	8	4	Median	0.91371	0.8046	NaN	1	0	Median	0.85416	1.0216	7.6024	3	1	Plateau	0.85787	0.85246	12.648	3	2	Median	1.0165	1.0733	NaN	1	1	Median	801730000	396020000	405700000	127990000	46057000	81929000	303980000	167950000	136030000	260720000	128010000	132710000	109040000	54007000	55038000	42295	2323	39813	257773;257774;257775;257776;257777;257778;257779;257780	345597;345598;345599;345600;345601;345602;345603;345604;345605	345600			9	
QQVSLLKEK	2	Acetyl (K)	1113.6394	0.63937381	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	48.59	39.446	2	0.018827	21036	160513_QHF_FH_JSI10Kac_3	54.982	30.952			1.1047	1.2548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1047	1.2548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2985600	1144700	1840900	0	0	0	2309900	1144700	1165200	0	0	0	675740	0	675740	42296	2323	39814	257781;257782	345606;345607	345607	2417		2	
QQVSPIR	0	Unmodified	826.4661	0.4661009	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	13.731	13.167	2	0.0074362	10399	160511_QHF_FH_JSI11i_2	87.435	53.696			0.99381	1.0086	6.2195	4	0	Median	1.1246	0.97609	NaN	1	0	Median	0.75756	0.92609	NaN	1	0	Median	1.0371	1.0422	NaN	1	0	Median	0.95234	1.0602	NaN	1	0	Median	273490000	139470000	134030000	56505000	27472000	29033000	44702000	24858000	19843000	108340000	53215000	55121000	63949000	33920000	30029000	42297	5279	39815	257783;257784;257785;257786	345608;345609	345609			2	
QQVSTLK	1	Unmodified	802.45487	0.45486751	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.8668	9.6312	2	0.030977	7428	160511_QHF_FH_JSI10i_1	53.679	12.827			0.20453	0.24564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20453	0.24564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292590000	237370000	55222000	0	0	0	292590000	237370000	55222000	0	0	0	0	0	0	42298	446	39816	257787	345610	345610			1	
QQVTILATPLPEESMK	1	Unmodified	1783.939	0.93898623	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	75.553	74.823	2	3.2262E-07	66458	160511_QHF_FH_JSI9i_1	151.78	108.24			0.56543	0.53945	5.0277	2	2	Median	0.60902	0.52061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52496	0.55897	NaN	1	1	Median	75303000	44863000	30440000	32292000	17528000	14764000	0	0	0	0	0	0	43010000	27334000	15676000	42299	2313	39817	257788;257789	345611;345612;345613	345612			3	
QQVVLENAAK	1	Unmodified	1098.6033	0.60332266	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			23.971	23.215	2	0.00077176	19928	160511_QHF_FH_JSI9i_1	83.783	46.137			0.56797	0.56243	45.398	2	2	Median	0.49533	0.40799	NaN	1	1	Median	0.65126	0.77532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120280000	80563000	39718000	75517000	52829000	22687000	44764000	27733000	17030000	0	0	0	0	0	0	42300	2175	39818	257790;257791	345614;345615	345615			2	
QQWQQLYDTLNAWK	1	Unmodified	1820.8846	0.8845829	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								3	2	2	2	97.132	96.892	2;3	6.3721E-97	84992	160511_QHF_FH_JSI9i_2	229.16	198.95			0.972	0.97475	11.263	8	0	Median	1.2519	1.0749	16.619	2	0	Median	0.88301	1.0725	17.58	2	0	Median	0.94089	0.93669	4.945	2	0	Median	0.92045	1.0172	5.3462	2	0	Median	452940000	221800000	231130000	100220000	29655000	70564000	116550000	70685000	45864000	127660000	64417000	63246000	108510000	57047000	51461000	42301	3222	39819	257792;257793;257794;257795;257796;257797;257798;257799;257800	345616;345617;345618;345619;345620;345621;345622;345623;345624;345625;345626;345627;345628;345629;345630;345631;345632;345633;345634;345635;345636	345625			21	
QQYESVAAK	1	Unmodified	1022.5033	0.50327426	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22	4	1	2			3				3	2	3	2	14.173	11.218	2	2.3972E-08	9501	160511_QHF_FH_JSI10i_1	150.05	127.92			0.9235	0.96972	8.0934	7	0	Median	1.0677	0.88146	NaN	1	0	Median	0.88175	1.0438	4.6069	2	0	Median	0.95313	0.92787	6.2386	2	0	Median	0.87469	0.92525	8.6382	2	0	Median	2409200000	1334900000	1074300000	569810000	291170000	278640000	597500000	361570000	235930000	628790000	350980000	277810000	613080000	331180000	281900000	42302	913	39820	257801;257802;257803;257804;257805;257806;257807;257808;257809;257810	345637;345638;345639;345640;345641;345642;345643;345644;345645;345646;345647;345648	345642			12	
QQYIEQSQAEIYHNR	0	Unmodified	1905.8969	0.8969385	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.981	33.835	3	4.415E-08	28800	160511_QHF_FH_JSI11i_2	81.632	77.791			0.76515	0.89709	19.291	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63962	0.7827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91531	1.0282	NaN	1	0	Median	62207000	28438000	33769000	0	0	0	32871000	13946000	18925000	0	0	0	29336000	14492000	14844000	42303	4907	39821	257811;257812;257813;257814	345649;345650;345651;345652;345653;345654	345653			6	
QQYLPLALHLASEFFLR	0	Unmodified	2045.1098	0.10983181	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	97.517	89.935	2;3	1.5596E-08	53250	160513_QHF_FH_JSI10Kac_6	117.78	90.635			0.72647	0.82222	35.606	2	0	Median	NaN	NaN	NaN	0	0	Median	0.53931	0.63921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97858	1.0576	NaN	1	0	Median	194740000	118220000	76528000	0	0	0	136560000	90752000	45808000	0	0	0	58184000	27464000	30719000	42304	2789	39822	257815;257816;257817	345655;345656;345657	345656			3	
QQYLQSIEER	0	Unmodified	1292.6361	0.63607935	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1.5	0.5	1	1								2				38.823	37.692	2	1.8571E-09	32822	160511_QHF_FH_JSI9i_2	132.01	115.34			1.3119	1.1066	9.1463	2	0	Median	1.3119	1.1066	9.1463	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119080000	55331000	63746000	119080000	55331000	63746000	0	0	0	0	0	0	0	0	0	42305	1196	39823	257818;257819	345658;345659;345660	345659			3	
QQYLQSIEEREK	1	Unmodified	1549.7736	0.77363546	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	34.614	34.137	3	1.4723E-07	28905	160511_QHF_FH_JSI12i_3	109.84	98.231			1.2764	1.3798	3.8089	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1357	1.4175	NaN	1	0	Median	1.4344	1.3432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	239700000	105280000	134420000	0	0	0	98113000	39873000	58240000	141590000	65410000	76176000	0	0	0	42306	1196	39824	257820;257821;257822	345661;345662;345663;345664;345665	345665			5	
QQYTNQLAK	1	Unmodified	1092.5564	0.55637247	288	O15400	STX7	Syntaxin-7	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	16.207	15.663	2	2.0133E-05	12946	160511_QHF_FH_JSI9i_1	106.93	72.118			0.981	0.99888	32.261	3	1	Median	2.069	1.7038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.981	0.95333	NaN	1	1	Median	0.95007	0.99888	NaN	1	0	Median	151950000	78467000	73484000	46781000	17287000	29494000	0	0	0	45707000	24616000	21091000	59463000	36564000	22900000	42307	288	39825	257823;257824;257825;257826	345666;345667;345668;345669	345669			4	
QRDLEGAVSR	0	Unmodified	1129.584	0.5839842	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			12.792	12.03	2;3	9.6694E-05	9458	160511_QHF_FH_JSI10i_3	71.176	42.218			0.92833	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92833	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43466000	21888000	21578000	0	0	0	43466000	21888000	21578000	0	0	0	0	0	0	42308	4686	39826	257827;257828	345670;345671;345672	345670			3	
QRDSEIMQQK	1	Unmodified	1261.6085	0.60848439	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	3	3	9.3004	8.9522	2;3	4.9989E-09	6919	160511_QHF_FH_JSI10i_2	137.98	89.182			0.85923	0.93314	22.199	8	5	Median	0.97211	0.82945	14.205	2	1	Median	0.80947	0.98927	5.8052	2	1	Median	0.99423	0.96336	24.323	2	1	Median	0.97613	1.0364	45.456	2	2	Median	970180000	475660000	494520000	322510000	137290000	185230000	395060000	220150000	174900000	186930000	88196000	98736000	65677000	30028000	35649000	42309	2130	39827	257829;257830;257831;257832;257833;257834;257835;257836;257837;257838;257839	345673;345674;345675;345676;345677;345678;345679;345680;345681;345682;345683;345684	345681			12	
QRDSEIMQQK	1	Oxidation (M)	1277.6034	0.60339901	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	0	0	1	1	By MS/MS				2	0		1								1				9.4917	8.9755	3	0.0041328	6811	160511_QHF_FH_JSI9i_2	55.461	48.802			0.89801	0.75892	NaN	1	0	Median	0.89801	0.75892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39592000	19865000	19727000	39592000	19865000	19727000	0	0	0	0	0	0	0	0	0	42310	2130	39827	257840	345685	345685		1787	1	
QRDSEIMQQKQK	2	Acetyl (K)	1559.7726	0.77258961	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	15	0								4		1	1	1	1	22.94	13.592	3	0.00051324	9481	160513_QHF_FH_JSI11Kac_5	86.114	72.788			0.68764	0.70384	45.911	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5184	0.50873	NaN	1	0	Median	0.91214	0.97379	NaN	1	0	Median	13666000	7680000	5985600	1132700	0	1132700	0	0	0	10178000	6672200	3505600	2355100	1007800	1347200	42311	2130	39828	257841;257842;257843;257844	345686;345687;345688;345689	345688	2233		4	
QRDSEIMQQKQK	2	Acetyl (K);Oxidation (M)	1575.7675	0.76750423	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	1	0	1	2			By MS/MS	By MS/MS	14.7	0.471							1	2				1	2	12.343	3.5852	3	0.00011505	4788	160513_QHF_FH_JSI11Kac_5	89.403	78.191			0.77643	0.82257	14.461	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75572	0.72011	NaN	1	0	Median	0.82641	0.88925	11.023	2	0	Median	8225100	4242100	3983000	0	0	0	0	0	0	2651900	1903600	748320	5573200	2338500	3234700	42312	2130	39828	257845;257846;257847	345690;345691;345692;345693	345691	2233	1787	4	
QRDYILEGEPGK	1	Unmodified	1403.7045	0.70449327	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	30.591	30.186	2;3	2.7752E-05	25320	160511_QHF_FH_JSI12i_3	79.089	65.661			0.87199	0.89291	7.5434	6	0	Median	1.1375	0.99936	NaN	1	0	Median	0.79972	0.96371	NaN	1	0	Median	0.92888	0.87344	4.6973	3	0	Median	0.81612	0.8365	NaN	1	0	Median	342460000	166960000	175500000	33250000	16951000	16299000	63111000	38342000	24769000	179890000	83131000	96760000	66207000	28534000	37674000	42313	5295	39829	257848;257849;257850;257851;257852;257853	345694;345695;345696;345697;345698	345698			4	
QREEEIEAQEK	1	Unmodified	1387.6579	0.657937	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	9.6606	9.2203	2;3	1.2376E-05	6818	160511_QHF_FH_JSI12i_2	96.64	75.34			0.86788	0.85588	27.846	7	0	Median	1.5116	1.2657	3.3357	2	0	Median	0.53607	0.65674	12.637	2	0	Median	0.85904	0.85489	0.1648	2	0	Median	0.93515	1.0052	NaN	1	0	Median	370210000	188850000	181360000	111000000	46062000	64938000	100620000	64608000	36009000	116010000	57648000	58367000	42583000	20537000	22046000	42314	587	39830	257854;257855;257856;257857;257858;257859;257860;257861	345699;345700;345701;345702;345703;345704;345705	345699			7	
QREEITAIVK	1	Unmodified	1185.6717	0.67173657	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	28.706	28.652	3	0.023621	24074	160511_QHF_FH_JSI12i_3	38.634	30.121			2.0102	2.0767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0102	2.0767	NaN	1	1	Median	14873000	6030000	8843100	0	0	0	0	0	0	0	0	0	14873000	6030000	8843100	42315	4191	39831	257862;257863	345706;345707	345707			2	
QREELGQGLQGVEQK	1	Unmodified	1697.8697	0.86966111	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		8	4					4		3	4	5	4	33.804	30.871	2;3	4.8513E-10	27137	160511_QHF_FH_JSI10i_2	157.23	133.04			1.004	1.0213	28.596	16	1	Median	1.3039	1.1219	11.929	3	0	Median	0.85457	1.037	49.373	4	1	Median	1.047	1.0163	5.6604	5	0	Median	0.81489	0.86905	19.57	4	0	Median	1759800000	975040000	784790000	345370000	162510000	182860000	441590000	265070000	176520000	727660000	403620000	324050000	245200000	143850000	101360000	42316	2252	39832	257864;257865;257866;257867;257868;257869;257870;257871;257872;257873;257874;257875;257876;257877;257878;257879	345708;345709;345710;345711;345712;345713;345714;345715;345716;345717;345718;345719;345720;345721;345722;345723;345724;345725;345726;345727;345728;345729;345730	345724			23	
QREEMLEK	1	Unmodified	1061.5175	0.51754412	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		10.048	10.048	2	0.023432	7651	160511_QHF_FH_JSI11i_3	72.643	29.397			1.225	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.225	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73324000	34252000	39072000	0	0	0	0	0	0	73324000	34252000	39072000	0	0	0	42317	2804	39833	257880	345731	345731			1	
QREEYQPATPGLGMFVEVK	1	Unmodified	2178.0779	0.07793933	4475	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		74.179	73.804	3	1.4357E-05	65715	160511_QHF_FH_JSI11i_3	81.967	67.506			0.7159	0.75076	27.112	2	1	Median	NaN	NaN	NaN	0	0	Median	0.51374	0.61979	NaN	1	1	Median	0.99762	0.90942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67217000	35079000	32138000	0	0	0	18430000	12922000	5507200	48788000	22157000	26631000	0	0	0	42318	4475	39834	257881;257882	345732;345733;345734	345732			3	
QREFESR	0	Unmodified	950.45699	0.45699277	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.6	0.49		2	3							2	3			5.5423	5.0704	2;3	0.0043142	3093	160511_QHF_FH_JSI10i_3	72.485	49.056			0.92842	0.98947	31.693	5	1	Median	1.3712	1.1429	50.481	2	0	Median	0.92842	1.0565	20.538	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2500200000	1328300000	1171900000	678330000	294730000	383600000	1821800000	1033500000	788310000	0	0	0	0	0	0	42319	791	39835	257883;257884;257885;257886;257887	345735;345736;345737;345738;345739	345736			5	
QREITLK	1	Unmodified	886.52362	0.52361577	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		12.153	11.657	3	0.057873	9050	160511_QHF_FH_JSI11i_3	25.737	6.2597			0.97034	0.89464	28.536	3	0	Plateau	1.8765	1.5011	NaN	1	0	Median	0.80429	0.94084	NaN	1	0	Median	0.97034	0.89464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	856810000	419740000	437070000	240680000	89965000	150710000	250030000	129140000	120890000	366100000	200630000	165470000	0	0	0	42320	4940	39836	257888;257889;257890	345740	345740			1	
QRELAEQELEK	1	Unmodified	1371.6994	0.69940789	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		21.092	20.81	2;3	4.4289E-06	17478	160511_QHF_FH_JSI11i_3	92.856	62.521			0.94461	0.90104	47.57	3	1	Median	NaN	NaN	NaN	0	0	Median	0.4953	0.60899	NaN	1	1	Median	1.2631	1.1892	39.244	2	0	Median	NaN	NaN	NaN	0	0	Median	154550000	67965000	86588000	0	0	0	34263000	23914000	10349000	120290000	44051000	76239000	0	0	0	42321	2636	39837	257891;257892;257893	345741;345742;345743;345744	345743			4	
QREMEEQMR	0	Unmodified	1235.5387	0.53869027	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	8.6638	8.3469	2	0.00024157	6303	160511_QHF_FH_JSI10i_2	100.02	77.869			1.1938	1.1112	18.715	3	0	Median	1.5813	1.3348	NaN	1	0	Median	0.75419	0.91805	NaN	1	0	Median	1.1938	1.1112	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	212970000	91709000	121260000	61298000	26830000	34468000	54011000	26752000	27258000	97661000	38127000	59535000	0	0	0	42322	1222	39838	257894;257895;257896;257897;257898	345745;345746;345747;345748;345749;345750;345751	345750			7	
QREPGLGFSFEFTEQQK	1	Unmodified	2026.9749	0.97485447	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			72.43	70.974	3	0.017071	59582	160511_QHF_FH_JSI10i_3	41.86	37.411			0.83498	0.9805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83498	0.9805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17644000	10273000	7370900	0	0	0	17644000	10273000	7370900	0	0	0	0	0	0	42323	997	39839	257899	345752	345752			1	
QREQMEQMK	1	Unmodified	1206.5485	0.54852667	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	7.815	7.6562	2;3	2.9813E-05	5694	160511_QHF_FH_JSI10i_2	87.298	68.518			0.88918	0.92968	27.914	6	1	Median	1.4612	1.2705	NaN	1	0	Median	0.86765	1.0729	NaN	1	0	Median	0.96803	0.92968	15.578	2	0	Median	0.64003	0.65054	5.8646	2	1	Median	490360000	260070000	230280000	58059000	26016000	32043000	165620000	84761000	80856000	163510000	79962000	83546000	103180000	69335000	33840000	42324	2529	39840	257900;257901;257902;257903;257904;257905	345753;345754;345755;345756	345755			4	
QRESDITK	1	Unmodified	975.49852	0.49852324	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	1	3	1	5.0606	4.8769	2;3	0.006254	2553	160511_QHF_FH_JSI12i_3	46.001	31.328			0.80131	0.78385	10.597	6	1	Median	0.99024	0.82888	7.1375	2	0	Median	0.77532	0.96414	NaN	1	0	Median	0.78211	0.74478	6.426	2	1	Median	0.7843	0.77964	NaN	1	0	Median	1795700000	996570000	799100000	606590000	309230000	297360000	168470000	110940000	57539000	665380000	380790000	284590000	355220000	195620000	159610000	42325	1132	39841	257906;257907;257908;257909;257910;257911;257912	345757;345758;345759;345760;345761;345762	345762			6	
QRFPLGGDDEVMSSTLQQFSK	1	Unmodified	2369.1322	0.13215975	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				83.831	82.548	3	0.011103	67915	160511_QHF_FH_JSI9i_3	35.421	20.167			1.8038	1.5068	NaN	1	0	Median	1.8038	1.5068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14162000	5538500	8623900	14162000	5538500	8623900	0	0	0	0	0	0	0	0	0	42326	5367	39842	257913	345763;345764	345764			2	
QRIDEFEAL	0	Unmodified	1119.556	0.55603812	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	56.859	56.11	2	0.00051506	49548	160511_QHF_FH_JSI10i_2	95.909	85.495			0.97574	1.0341	5.4935	7	0	Median	1.1755	0.98336	NaN	1	0	Median	0.83402	1.0132	2.893	2	0	Median	0.9726	0.97737	7.9833	2	0	Median	0.98368	1.0746	2.2929	2	0	Median	2731400000	1345900000	1385500000	383590000	174470000	209120000	725300000	389870000	335430000	1023000000	494530000	528430000	599560000	287080000	312480000	42327	1073	39843	257914;257915;257916;257917;257918;257919;257920	345765;345766;345767;345768;345769;345770;345771;345772;345773;345774;345775;345776;345777;345778;345779;345780	345780			16	
QRIDEFEAM	0	Unmodified	1137.5125	0.51245874	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.106	47.125	2	0.00064026	41128	160511_QHF_FH_JSI9i_2	94.302	62.368			1.0263	1.0999	5.6756	4	0	Median	1.2605	1.1033	NaN	1	0	Median	0.96412	1.1648	NaN	1	0	Median	1.0926	1.0965	NaN	1	0	Median	0.93888	1.0148	NaN	1	0	Median	852420000	418200000	434220000	125520000	60606000	64912000	144050000	74522000	69526000	350350000	164660000	185690000	232510000	118420000	114090000	42328	1426	39844	257921;257922;257923;257924	345781;345782;345783;345784;345785	345783			5	
QRIDEFESM	0	Unmodified	1153.5074	0.50737336	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	44.902	44.079	2	3.9949E-05	37895	160511_QHF_FH_JSI11i_2	114.28	42.78			0.98664	1.056	8.141	8	0	Median	1.1191	0.94488	14.021	2	0	Median	0.86533	1.0575	0.83397	2	0	Median	1.022	1.0125	6.5939	2	0	Median	1.0021	1.0866	0.46847	2	0	Median	4075900000	2084500000	1991400000	666500000	301030000	365470000	1181600000	672300000	509320000	1373300000	681940000	691370000	854490000	429270000	425220000	42329	1270	39845	257925;257926;257927;257928;257929;257930;257931;257932	345786;345787;345788;345789;345790;345791;345792;345793;345794;345795;345796;345797;345798;345799	345797			14	
QRIDEFESM	0	Oxidation (M)	1169.5023	0.50228799	1270	P26038	MSN	Moesin	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.64	2	3					1			1	2	2	1	30.036	27.784	2	0.0034751	24378	160511_QHF_FH_JSI10i_2	84.743	84.743			0.82381	0.95075	15.338	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78298	0.92412	12.802	2	0	Median	1.0982	1.0913	19.503	2	0	Median	0.82381	0.88842	NaN	1	0	Median	139960000	74348000	65616000	0	0	0	63694000	34265000	29430000	70064000	36561000	33503000	6205100	3522000	2683100	42330	1270	39845	257933;257934;257935;257936;257937;257938	345800;345801;345802;345803;345804	345803		901	5	
QRLEAEAGR	0	Unmodified	1028.5363	0.53630573	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			7.6163	7.0955	2	0.030045	5018	160511_QHF_FH_JSI10i_3	56.916	2.3664			0.64634	0.75077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64634	0.75077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28268000	14727000	13541000	0	0	0	28268000	14727000	13541000	0	0	0	0	0	0	42331	2636	39846	257939	345805	345805			1	
QRLEELQLFK	1	Unmodified	1302.7296	0.7295858	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			59.336	58.405	3	0.022893	51681	160511_QHF_FH_JSI10i_2	34.755	31.626			0.94931	0.98605	5.5237	2	0	Median	1.1648	1.0253	NaN	1	0	Median	0.77365	0.94827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78486000	43930000	34557000	33142000	19149000	13994000	45344000	24781000	20563000	0	0	0	0	0	0	42332	4202	39847	257940;257941	345806	345806			1	
QRLEQQLAGIPK	1	Unmodified	1379.7885	0.78849767	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.96	38.96	3	0.010451	34129	160511_QHF_FH_JSI11i_3	47.429	42.114			0.32693	0.30491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32693	0.30491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	217880000	179550000	38329000	0	0	0	0	0	0	217880000	179550000	38329000	0	0	0	42333	1406	39848	257942	345807	345807			1	
QRPADAEDLPAAPGQSIDK	1	Unmodified	1977.9756	0.97558275	3560	Q8N6R0	METTL13	Methyltransferase-like protein 13	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.8	1	1	3							1		1	3	40.008	39.454	3	0.00016108	34323	160511_QHF_FH_JSI9i_2	73.11	63.826			1.1666	1.1061	55.931	3	3	Plateau	0.87905	0.77603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1666	1.1061	NaN	1	1	Median	0.35848	0.36964	NaN	1	1	Median	103510000	61825000	41690000	32621000	19414000	13206000	0	0	0	24082000	8129600	15953000	46812000	34281000	12531000	42334	3560	39849	257943;257944;257945;257946;257947	345808;345809;345810;345811;345812	345810			5	
QRPDLGSAQK	1	Unmodified	1098.5782	0.57817054	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	9.9897	9.6687	2;3	8.0811E-11	7302	160511_QHF_FH_JSI10i_3	121.36	92.19			0.98	0.99883	26.99	8	0	Median	1.3564	1.1719	60.137	2	0	Median	0.76393	0.94883	8.6505	3	0	Median	1.2071	1.16	18.651	2	0	Median	1.0816	1.0914	NaN	1	0	Median	1951300000	1045000000	906280000	286200000	128340000	157860000	581310000	346540000	234770000	908010000	482200000	425800000	175770000	87916000	87854000	42335	1409	39850	257948;257949;257950;257951;257952;257953;257954;257955	345813;345814;345815;345816;345817;345818;345819;345820;345821;345822	345816			10	
QRPGASTDSSTQGANLPDFELLSR	0	Unmodified	2546.2361	0.23610754	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				71.813	70.331	3	1.8456E-13	57771	160511_QHF_FH_JSI9i_3	111.67	97.657			1.2247	1.0309	NaN	1	0	Median	1.2247	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34228000	16347000	17881000	34228000	16347000	17881000	0	0	0	0	0	0	0	0	0	42336	5466	39851	257956	345823;345824	345824			2	
QRPQATAEQIR	0	Unmodified	1296.6898	0.68984626	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			11.216	10.543	3	2.2855E-07	8121	160511_QHF_FH_JSI9i_3	110.31	79.739			0.93196	0.8924	19.327	2	0	Median	0.97352	0.77841	NaN	1	0	Median	0.89218	1.0231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	282000000	140450000	141550000	209110000	95670000	113440000	72883000	44776000	28107000	0	0	0	0	0	0	42337	2505	39852	257957;257958	345825;345826;345827	345827			3	
QRQEEPPPGPQRPDQSAAAAGPGDPK	1	Unmodified	2680.2954	0.29535376	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			23.248	22.22	4	3.3141E-07	19179	160511_QHF_FH_JSI10i_2	64.035	56.842			1.2373	1.0712	13.541	3	0	Plateau	1.249	1.0712	NaN	1	0	Median	0.71606	0.85161	3.974	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166760000	76050000	90712000	85919000	37396000	48524000	80843000	38655000	42188000	0	0	0	0	0	0	42338	4349	39853	257959;257960;257961	345828;345829;345830;345831	345831			4	
QRQELEK	1	Unmodified	929.49304	0.49304393	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	9.17	6.84		2	1						3	1	2	2	1	5.1055	0.81738	2;3	0.0039315	2462	160511_QHF_FH_JSI11i_3	65.252	15.894			0.78101	0.83215	15.547	5	0	Median	1.2085	1.0521	NaN	1	0	Median	0.75071	0.9115	12.88	2	0	Median	0.78101	0.76959	NaN	1	0	Median	0.68059	0.74374	NaN	1	0	Median	527250000	287370000	239880000	9355300	3899400	5456000	466420000	250880000	215540000	42262000	26819000	15443000	9214700	5771400	3443300	42339	1436	39854	257962;257963;257964;257965;257966;257967	345832;345833;345834	345832			3	
QRTMKRDMSMKLR	2	Acetyl (K);2 Oxidation (M)	1753.875	0.87496296	5828				yes	yes	1	0	2	4			By MS/MS		13	0						1						1		33.708	24.873	3	0.021673	14879	160513_QHF_FH_JSI11Kac_3	35.737	18.993	+		37.787	36.732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37.787	36.732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7526600	265680	7260900	0	0	0	0	0	0	7526600	265680	7260900	0	0	0	42340	5828	39855	257968	345835	345835	3572		1	
QRVEQFAR	0	Unmodified	1032.5465	0.54647648	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		4	4							4	4			11.288	10.68	2;3	1.1285E-05	8189	160511_QHF_FH_JSI9i_3	147.36	74.102			0.9356	0.9403	9.3314	8	0	Median	1.1353	0.90575	8.0665	4	0	Median	0.80234	0.95357	11.612	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1218400000	619420000	599000000	875700000	431300000	444390000	342730000	188120000	154610000	0	0	0	0	0	0	42341	1415	39856	257969;257970;257971;257972;257973;257974;257975;257976	345836;345837;345838;345839;345840;345841;345842;345843;345844;345845;345846	345840			11	
QRYEDQLK	1	Unmodified	1078.5407	0.5407224	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	11.014	10.847	2	0.0031386	8123	160511_QHF_FH_JSI12i_3	107.57	70.016			0.93337	0.93249	32.897	4	0	Median	2.0667	1.7582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92376	0.88976	1.3192	2	0	Median	0.90322	0.96819	NaN	1	0	Median	174570000	86250000	88318000	21648000	6814200	14834000	0	0	0	78609000	39579000	39029000	74312000	39857000	34455000	42342	2957;5035	39857	257977;257978;257979;257980	345847;345848;345849;345850;345851	345850			5	
QRYEILTPNSIPK	1	Unmodified	1557.8515	0.85149185	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							3	4	2	2	52.624	51.641	2;3	2.6385E-05	43292	160511_QHF_FH_JSI10i_3	92.295	84.384			0.79992	0.88779	8.9731	11	0	Median	1.1946	0.98261	12.771	3	0	Plateau	0.75981	0.90237	4.0575	4	0	Median	0.8455	0.81056	5.316	2	0	Median	0.8766	0.91567	11.839	2	0	Median	2290300000	1157800000	1132400000	882000000	398400000	483610000	851510000	467510000	384000000	460670000	245120000	215550000	96081000	46810000	49271000	42343	1436	39858	257981;257982;257983;257984;257985;257986;257987;257988;257989;257990;257991	345852;345853;345854;345855;345856;345857;345858;345859;345860;345861;345862;345863;345864;345865;345866;345867;345868;345869;345870;345871;345872;345873;345874	345856			23	
QSAALCLLR	0	Unmodified	1030.5593	0.55934935	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0			By MS/MS		3	0			1									1		48.227	48.227	2	0.0082979	42643	160511_QHF_FH_JSI11i_3	53.166	36.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42344	726;635	39859	257992	345875	345875			1	
QSACNLEK	1	Unmodified	948.43348	0.43348014	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	8.5158	6.8198	2	0.00083171	5731	160511_QHF_FH_JSI10i_1	97.635	54.766			1.078	1.1697	22.032	5	0	Median	1.4499	1.1697	NaN	1	0	Median	0.7869	0.91868	NaN	1	0	Median	0.84505	0.81189	NaN	1	0	Median	1.1915	1.2896	13.163	2	0	Median	1616000000	875830000	740200000	235650000	109570000	126080000	383960000	217920000	166040000	592220000	373340000	218880000	404190000	175000000	229190000	42345	1436	39860	257993;257994;257995;257996;257997	345876;345877;345878;345879;345880;345881	345879			6	
QSACNLEKK	2	Acetyl (K)	1118.539	0.53900784	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0.577					1	4	1			1	1	2	2	18.5	9.462	2	4.8823E-32	5308	160513_QHF_FH_JSI9Kac_3	198.61	149.86			0.98	0.97547	28.854	6	0	Median	0.92859	0.76274	NaN	1	0	Median	1.0343	1.2082	NaN	1	0	Median	0.80391	0.78417	0.61346	2	0	Median	1.2618	1.3596	2.3499	2	0	Median	763580000	394260000	369320000	233520000	123070000	110450000	150680000	77722000	72954000	222060000	114110000	107950000	157330000	79364000	77961000	42346	1436	39861	257998;257999;258000;258001;258002;258003	345882;345883;345884;345885;345886;345887;345888	345885	1411		7	
QSADFMPLK	1	Unmodified	1035.5059	0.5059168	3677	Q8NI60	ADCK3	Atypical kinase ADCK3, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				49.359	48.142	2	0.011061	42831	160511_QHF_FH_JSI9i_1	49.418	24.495			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42347	3677	39862	258004	345889	345889			1	
QSAEEQAQAR	0	Unmodified	1116.516	0.51596421	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	5.682	-1.643	2	0.0099969	1965	160513_QHF_FH_JSI11Kac_3	68.371	38.116			0.81874	0.85663	17.045	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6688	0.75936	NaN	1	0	Median	1.0023	0.96636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8967000	4805800	4161200	0	0	0	1700600	1130400	570210	7266400	3675400	3591000	0	0	0	42348	2636	39863	258005;258006;258007	345890;345891	345890			2	
QSAELNK	1	Unmodified	788.40283	0.40283194	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	1	2	6.6054	5.2701	2	0.012734	4123	160511_QHF_FH_JSI12i_1	68.915	19.556			0.81066	0.85614	55.535	7	5	Median	0.47684	0.39563	11.875	2	2	Median	0.70636	0.82732	52.529	2	2	Median	1.1115	1.0961	NaN	1	0	Median	1.0931	1.1674	43.85	2	1	Median	1537400000	1009900000	527460000	679260000	508960000	170300000	462610000	284740000	177870000	176150000	84514000	91633000	219380000	131720000	87655000	42349	3328	39864	258008;258009;258010;258011;258012;258013;258014	345892;345893;345894;345895;345896;345897;345898;345899	345893			8	
QSAESVSK	1	Unmodified	834.40831	0.40831125	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.1616	4.8461	2	0.0040696	2708	160511_QHF_FH_JSI11i_1	69.825	40.676			0.94153	1.0023	8.3752	4	0	Median	1.2823	1.0595	NaN	1	0	Median	0.84304	0.98267	NaN	1	0	Median	1.0515	1.0223	NaN	1	0	Median	0.81627	0.87373	NaN	1	0	Median	1033200000	560240000	472980000	189730000	79301000	110430000	305720000	179090000	126630000	267290000	157100000	110200000	270470000	144750000	125720000	42350	346	39865	258015;258016;258017;258018	345900;345901;345902;345903;345904;345905;345906;345907	345900			8	
QSAGAVVIILPR	0	Unmodified	1222.7398	0.73975656	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.95		4					2	5	3	3	3	5	3	73.533	65.506	2	6.9113E-31	34800	160513_QHF_FH_JSI11Kac_5	180.97	161.7			1.0751	1.1018	12.297	13	4	Median	1.5128	1.3032	12.501	3	1	Plateau	0.89609	1.067	4.5331	2	0	Median	1.3104	1.2657	15.046	5	2	Median	0.92162	0.99561	8.9308	3	1	Median	256750000	118860000	137890000	76793000	31756000	45038000	29147000	15115000	14033000	97418000	45991000	51427000	53394000	26000000	27394000	42351	3951	39866	258019;258020;258021;258022;258023;258024;258025;258026;258027;258028;258029;258030;258031;258032	345908;345909;345910;345911;345912;345913;345914;345915;345916;345917;345918;345919;345920;345921	345916			14	
QSALDYFMFAVR	0	Unmodified	1446.6966	0.69657112	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			91.305	84.056	2	9.2675E-08	48607	160513_QHF_FH_JSI10Kac_6	105.2	80.738			1.1946	1.2083	16.073	2	1	Median	1.252	1.0785	NaN	1	1	Median	1.1398	1.3538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144320000	71944000	72372000	45033000	16211000	28821000	99283000	55732000	43551000	0	0	0	0	0	0	42352	5166	39867	258033;258034	345922;345923;345924	345923			3	
QSALEEAQQNPR	0	Unmodified	1369.6586	0.65860571	4718	Q9H4F8	SMOC1	SPARC-related modular calcium-binding protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		17.02	16.899	2	0.0032838	14305	160511_QHF_FH_JSI11i_1	66.663	47.883			1.0183	0.98943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0183	0.98943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42525000	23456000	19069000	0	0	0	0	0	0	42525000	23456000	19069000	0	0	0	42353	4718	39868	258035	345925	345925			1	
QSANDFFSYYDSHR	0	Unmodified	1735.7227	0.72266253	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.109	56.602	3	0.055614	49101	160511_QHF_FH_JSI11i_2	35.757	31.514			0.9726	0.94228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9726	0.94228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	150970000	82923000	68045000	0	0	0	0	0	0	150970000	82923000	68045000	0	0	0	42354	3862	39869	258036	345926	345926			0	
QSAQFWNATFAK	1	Unmodified	1397.6728	0.67279921	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.589	62.067	2	0.021035	54020	160511_QHF_FH_JSI11i_2	43.501	29.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42355	2977	39870	258037	345927	345927			1	
QSAQLTALAAQQQAAGK	1	Unmodified	1683.8904	0.89039656	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	41.436	40.791	2;3	2.2868E-30	37062	160511_QHF_FH_JSI12i_1	222.74	215.02			0.94692	0.91384	24.115	8	0	Median	0.94829	0.78552	8.6801	2	0	Median	0.74052	0.87126	9.4824	2	0	Median	1.2184	1.1931	40.444	2	0	Median	1.0438	1.0811	7.5626	2	0	Median	1103200000	470780000	632440000	243980000	100430000	143550000	254740000	127190000	127550000	308100000	122570000	185520000	296400000	120590000	175810000	42356	3961	39871	258038;258039;258040;258041;258042;258043;258044;258045	345928;345929;345930;345931;345932;345933;345934;345935;345936;345937;345938;345939;345940;345941;345942;345943	345933			16	
QSAQLTALAAQQQAAGKEEK	2	Unmodified	2070.0705	0.070545766	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.64	1	5	4							2	2	3	3	37.595	37.04	3	5.9572E-17	32209	160511_QHF_FH_JSI9i_2	172.83	149.5			1.0329	1.0279	26.549	10	6	Median	1.1131	0.9432	37.275	2	2	Median	0.69817	0.84631	21.71	2	0	Median	1.2794	1.1946	21.181	3	2	Median	1.0691	1.0707	32.661	3	2	Median	800560000	383570000	416990000	107440000	52393000	55045000	140580000	86175000	54406000	265430000	112660000	152760000	287120000	132340000	154780000	42357	3961	39872	258046;258047;258048;258049;258050;258051;258052;258053;258054;258055	345944;345945;345946;345947;345948;345949;345950;345951;345952;345953;345954;345955;345956;345957;345958	345950			15	
QSATDPR	0	Unmodified	773.36678	0.36678078	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			4.7369	4.4978	2	0.021461	2426	160511_QHF_FH_JSI10i_1	56.547	1.1058			0.61467	0.73029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61467	0.73029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298050000	191870000	106180000	0	0	0	298050000	191870000	106180000	0	0	0	0	0	0	42358	1409	39873	258056	345959	345959			1	
QSATSATSSK	1	Unmodified	966.4618	0.46180338	2549;2546	Q14571;Q14643	ITPR2;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	1.5637	1.371	2	6.4989E-05	860	160511_QHF_FH_JSI10i_1	90.15	80.164			0.98875	1.0591	41.872	4	2	Median	NaN	NaN	NaN	0	0	Median	0.92452	1.101	NaN	1	0	Median	0.71679	0.69747	57.379	2	2	Median	1.0574	1.072	NaN	1	0	Median	131030000	70636000	60391000	0	0	0	37126000	20649000	16477000	65265000	33909000	31356000	28636000	16079000	12557000	42359	2546;2549	39874	258057;258058;258059;258060	345960;345961;345962;345963;345964;345965	345964			6	
QSCATVQR	0	Unmodified	948.44471	0.44471353	117	O00273	DFFA	DNA fragmentation factor subunit alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	5.4233	5.0994	2	0.020564	3120	160511_QHF_FH_JSI12i_1	45.7	20.401			1.2174	1.2847	32.864	4	0	Median	0.86288	0.70761	NaN	1	0	Median	1.2476	1.4751	NaN	1	0	Median	1.3651	1.3227	NaN	1	0	Median	1.188	1.2478	NaN	1	0	Median	579860000	283480000	296380000	106900000	53102000	53799000	216550000	108740000	107810000	97038000	46951000	50086000	159370000	74686000	84682000	42360	117	39875	258061;258062;258063;258064	345966	345966			1	
QSDDEVYAPGLDIESSLK	1	Unmodified	1964.9215	0.92148149	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	3	1	2	77.123	76.748	2;3	5.9841E-11	69661	160511_QHF_FH_JSI11i_1	154.72	144.93			1.1342	1.2748	26.058	6	5	Median	1.7544	1.4294	NaN	1	1	Median	1.0908	1.2703	30.592	3	3	Plateau	1.1553	1.1093	NaN	1	1	Median	0.98484	1.0396	NaN	1	0	Median	409270000	195500000	213780000	34795000	11757000	23038000	277690000	134090000	143600000	47783000	22453000	25330000	49002000	27192000	21810000	42361	2676	39876	258065;258066;258067;258068;258069;258070;258071	345967;345968;345969;345970;345971;345972;345973;345974;345975;345976;345977	345967			11	
QSDELALVR	0	Unmodified	1029.5455	0.54547343	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.362	37.942	2	0.00065578	34149	160511_QHF_FH_JSI11i_1	76.605	62.602			0.87344	0.97254	2.284	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81807	0.95958	NaN	1	0	Median	1.0062	0.97496	NaN	1	0	Median	0.87344	0.93202	NaN	1	0	Median	414770000	218080000	196690000	0	0	0	146700000	80939000	65759000	162180000	78969000	83212000	105890000	58175000	47716000	42362	5213	39877	258072;258073;258074;258075	345978;345979;345980;345981	345978			4	
QSDLLVK	1	Unmodified	801.45962	0.45961853	2243	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	24.659	24.309	2	0.049097	21114	160511_QHF_FH_JSI11i_1	47.849	16.559			0.6304	0.61522	5.1773	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63791	0.5931	NaN	1	1	Median	0.62299	0.63816	NaN	1	0	Median	156400000	100400000	55997000	0	0	0	0	0	0	67970000	38667000	29303000	88431000	61738000	26694000	42363	2243	39878	258076;258077	345982;345983	345982			2	
QSDSVKGK	2	Acetyl (K)	889.45051	0.45051041	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	7.2928	0.029834	2	0.0033298	2684	160513_QHF_FH_JSI10Kac_3	91.853	34.39			0.8753	0.91051	17.68	3	0	Median	NaN	NaN	NaN	0	0	Median	0.58024	0.67512	NaN	1	0	Median	0.92162	0.91051	NaN	1	0	Median	0.8753	0.92312	NaN	1	0	Median	488910000	258820000	230100000	0	0	0	159220000	99450000	59768000	85801000	41203000	44598000	243890000	118160000	125730000	42364	2130	39879	258078;258079;258080	345984;345985;345986;345987	345987	2231;2232		4	
QSDSVKGKR	2	2 Acetyl (K)	1087.5622	0.56218613	2130	P84101	SERF2	Small EDRK-rich factor 2	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	15.681	8.4091	2	5.3185E-06	6503	160513_QHF_FH_JSI12Kac_3	128.81	91.255			0.8218	0.80695	44.292	3	0	Median	NaN	NaN	NaN	0	0	Median	0.57459	0.69526	NaN	1	0	Median	0.8218	0.80695	NaN	1	0	Median	1.4574	1.5956	NaN	1	0	Median	120980000	64554000	56425000	0	0	0	59528000	35263000	24266000	17548000	9116700	8431600	43902000	20174000	23728000	42365	2130	39880	258081;258082;258083	345988;345989;345990;345991;345992	345990	2231;2232		5	
QSDVMIVAGTLTNK	1	Unmodified	1475.7654	0.76537896	495	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	14	0							3				1		2	74.313	63.715	2	0.0018962	34276	160513_QHF_FH_JSI12Kac_4	69.451	53.226			0.83183	0.9283	16.144	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88459	1.0405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78222	0.82815	NaN	1	0	Median	8194400	3701000	4493400	0	0	0	5794500	2673200	3121300	0	0	0	2399900	1027800	1372100	42366	495	39881	258084;258085;258086	345993;345994;345995;345996	345995			4	
QSEAENTEQVNK	1	Unmodified	1375.6216	0.6215515	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.0847	7.7353	2	3.8832E-31	5610	160511_QHF_FH_JSI10i_1	183.99	150.72			0.74625	0.75868	35.277	4	1	Median	1.4771	1.1865	NaN	1	1	Median	0.48285	0.56215	NaN	1	0	Median	0.97391	0.93676	NaN	1	0	Median	0.5718	0.61445	NaN	1	0	Median	183270000	100040000	83228000	40910000	14596000	26315000	50357000	31411000	18946000	48361000	26443000	21918000	43640000	27591000	16049000	42367	4975	39882	258087;258088;258089;258090	345997;345998;345999;346000	345999			4	
QSEDLGSQFTEIFIK	1	Unmodified	1740.857	0.85703074	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									2	1	1	95.493	95.214	2	3.1164E-05	86503	160511_QHF_FH_JSI11i_1	122.1	106.89			0.97283	1.0219	37.883	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.84952	0.98491	NaN	1	0	Median	1.114	1.0602	NaN	1	0	Median	0.4854	0.53184	NaN	1	1	Median	313940000	158790000	155150000	0	0	0	151110000	82212000	68899000	154450000	72292000	82154000	8384900	4286800	4098000	42368	446	39883	258091;258092;258093;258094	346001;346002;346003;346004;346005;346006	346001			6	
QSEENNNLQSQVQK	1	Unmodified	1644.7703	0.770341	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.294	16.813	2	1.2771E-82	14372	160511_QHF_FH_JSI12i_1	253.42	231.09			0.91047	0.95333	11.785	4	1	Median	0.939	0.76914	NaN	1	1	Median	0.86381	0.99955	NaN	1	0	Median	0.98511	0.96581	NaN	1	0	Median	0.88281	0.94101	NaN	1	0	Median	402700000	204720000	197980000	106130000	48750000	57380000	99784000	61504000	38280000	91052000	47006000	44046000	105740000	47463000	58274000	42369	3307	39884	258095;258096;258097;258098	346007;346008;346009;346010;346011;346012;346013	346009			7	
QSEGLTK	1	Unmodified	761.39193	0.3919329	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	3	3	2	6.8879	4.2465	2	0.015682	4268	160511_QHF_FH_JSI12i_1	64.265	17.183			0.97617	0.99141	20.802	9	0	Median	0.98786	0.81223	NaN	1	0	Median	0.83279	0.99141	20.148	3	0	Median	1.3295	1.3172	25.689	3	0	Median	0.90056	0.97091	17.096	2	0	Median	4052000000	2184700000	1867300000	719750000	377780000	341980000	1087000000	623190000	463860000	1048700000	537140000	511600000	1196400000	646590000	549850000	42370	1741	39885	258099;258100;258101;258102;258103;258104;258105;258106;258107	346014;346015;346016;346017;346018;346019;346020;346021;346022	346016			9	
QSELSAEESPEK	1	Unmodified	1332.6045	0.60450445	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			17.595	17.342	2	7.3293E-05	14758	160511_QHF_FH_JSI10i_1	85.813	59.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42371	2866	39886	258108	346023	346023			1	
QSEPAAPPLEVSEEQVAR	0	Unmodified	1935.9538	0.95378467	3596	Q8NBM4	UBAC2	Ubiquitin-associated domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	54.124	53.719	2	5.3133E-07	48658	160511_QHF_FH_JSI11i_1	116.84	100.7			0.84651	0.8936	3.4643	2	2	Median	NaN	NaN	NaN	0	0	Median	0.8087	0.91576	NaN	1	1	Median	0.8861	0.87198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50129000	30362000	19768000	0	0	0	22831000	13171000	9659900	27298000	17190000	10108000	0	0	0	42372	3596	39887	258109;258110;258111;258112;258113;258114	346024;346025;346026;346027;346028;346029	346024			6	
QSEPFFK	1	Unmodified	881.42832	0.42831841	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.11		4					2	1		1	2	2	2	41.415	33.449	2	0.007619	28891	160511_QHF_FH_JSI9i_2	75.243	47.719			1.1328	1.2974	12.478	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0787	1.2681	NaN	1	0	Median	1.2016	1.1846	19.333	2	0	Median	1.1895	1.3275	NaN	1	1	Median	718240000	300550000	417690000	0	0	0	12284000	5941900	6342100	29626000	13320000	16306000	676330000	281290000	395050000	42373	1000	39888	258115;258116;258117;258118;258119;258120;258121	346030;346031;346032;346033;346034;346035	346034			6	
QSEPFFKATPEEK	2	Acetyl (K)	1578.7566	0.75658842	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.3	0.452						5	2				3	2	2	63.53	53.669	2;3	0.0013641	28161	160513_QHF_FH_JSI12Kac_3	78.653	56.178			0.67538	0.75902	32.94	6	0	Median	NaN	NaN	NaN	0	0	Median	0.84554	1.0066	15.36	3	0	Plateau	0.39046	0.3859	NaN	1	0	Median	0.66029	0.72339	10.302	2	0	Median	31866000	19132000	12734000	0	0	0	14196000	7663400	6532700	8136400	6028700	2107700	9533500	5439600	4093900	42374	1000	39889	258122;258123;258124;258125;258126;258127;258128	346036;346037;346038;346039;346040;346041;346042;346043	346039	796		8	
QSEQQRETLAQLQQEFQR	0	Unmodified	2246.104	0.10397116	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			59.961	59.037	3	4.8409E-07	52264	160511_QHF_FH_JSI10i_2	105.77	87.716			1.1928	1.2126	15.104	2	0	Median	1.3038	1.0897	NaN	1	0	Median	1.0913	1.3492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177570000	81016000	96553000	64103000	29246000	34857000	113470000	51770000	61696000	0	0	0	0	0	0	42375	263	39890	258129;258130	346044;346045;346046	346046			3	
QSEQVEK	1	Unmodified	846.40831	0.40831125	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0055	4.6914	2	0.002917	2593	160511_QHF_FH_JSI12i_1	107.9	47.108			0.98534	1.0062	27.463	4	1	Linear	1.1837	0.9478	NaN	1	0	Median	1.4324	1.6922	NaN	1	1	Median	0.99184	0.95538	NaN	1	0	Median	1.0215	1.0597	NaN	1	0	Median	1761600000	915370000	846230000	252990000	119130000	133860000	509210000	273540000	235660000	504790000	259950000	244840000	494600000	262730000	231860000	42376	931	39891	258131;258132;258133;258134	346047;346048;346049;346050;346051;346052	346049			6	
QSFAKPK	2	Acetyl (K)	846.45995	0.45995289	2306	Q12792	TWF1	Twinfilin-1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	28.828	20.592	2	0.017848	12504	160513_QHF_FH_JSI12Kac_4	79.469	55.496			0.73725	0.76198	24.513	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64605	0.64072	NaN	1	0	Median	0.84133	0.90619	NaN	1	0	Median	42784000	22076000	20707000	0	0	0	0	0	0	27602000	14994000	12608000	15181000	7082200	8099100	42377	2306	39892	258135;258136	346053;346054	346054	2413		2	
QSFALEQLK	1	Unmodified	1062.571	0.5709599	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	52.22	51.26	2	0.048412	43893	160511_QHF_FH_JSI12i_2	55.908	33.168			1.2734	1.3392	35.745	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0565	1.0401	NaN	1	0	Median	1.5348	1.7243	NaN	1	0	Median	114240000	53778000	60465000	0	0	0	0	0	0	64355000	32160000	32195000	49888000	21618000	28269000	42378	3900	39893	258137;258138	346055	346055			0	
QSFALEQLKAK	2	Acetyl (K)	1303.7136	0.71360139	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.062	62.296	2	0.0043805	33311	160513_QHF_FH_JSI11Kac_5	84.658	57.329			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42379	3900	39894	258139	346056	346056	2992		1	
QSFDDNDSEELEDK	1	Unmodified	1669.6591	0.6591188	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.424	32.82	2	6.4589E-15	29272	160511_QHF_FH_JSI10i_1	163.99	148.03			0.76882	0.88906	11.054	4	0	Linear	0.93192	0.7531	NaN	1	0	Median	0.7487	0.90926	NaN	1	0	Median	0.88939	0.86931	NaN	1	0	Median	0.94026	0.97913	NaN	1	0	Median	213740000	110910000	102820000	49850000	26289000	23561000	66472000	33909000	32563000	55480000	28975000	26505000	41934000	21739000	20194000	42380	454	39895	258140;258141;258142;258143	346057;346058;346059;346060;346061	346059			5	
QSFGAVTPGYDFMAR	0	Unmodified	1645.7559	0.75587691	1518	P41247	PNPLA4	Patatin-like phospholipase domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.861	72.236	2	0.00036209	63326	160511_QHF_FH_JSI11i_2	76.522	69.99			1.1092	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1092	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24297000	12747000	11550000	0	0	0	0	0	0	24297000	12747000	11550000	0	0	0	42381	1518	39896	258144;258145	346062;346063;346064	346063			3	
QSFTMVADTPENLR	0	Oxidation (M)	1623.7563	0.75627084	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.615	49.939	2	0.0002527	45188	160511_QHF_FH_JSI11i_1	94.688	66.511			0.9774	0.92385	10.991	4	2	Median	0.98614	0.79481	NaN	1	1	Median	0.73968	0.86152	NaN	1	0	Median	1.0323	0.99068	NaN	1	0	Median	0.96875	0.99392	NaN	1	1	Median	176300000	81402000	94899000	40679000	16827000	23852000	50946000	24011000	26936000	37529000	20639000	16889000	47146000	19924000	27222000	42382	2579	39897	258146;258147;258148;258149	346065;346066;346067;346068;346069;346070	346066		2021	6	
QSFTMVADTPENLR	0	Unmodified	1607.7614	0.76135622	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.645	7	4	1							4	3	2	3	59.873	59.108	2;3	6.1935E-98	53392	160511_QHF_FH_JSI10i_1	253.97	239.28			1.0472	1.0689	5.286	11	4	Median	1.2573	1.0333	7.0963	3	1	Plateau	0.87311	1.0495	7.3777	3	1	Plateau	1.0662	1.0504	1.2837	2	1	Median	1.0087	1.0905	1.3601	3	1	Plateau	3136100000	1564300000	1571900000	648140000	278870000	369270000	955080000	519870000	435210000	761570000	381780000	379790000	771330000	383730000	387600000	42383	2579	39897	258150;258151;258152;258153;258154;258155;258156;258157;258158;258159;258160;258161	346071;346072;346073;346074;346075;346076;346077;346078;346079;346080;346081;346082;346083;346084;346085	346077			15	
QSFVFIVTK	1	Unmodified	1067.6015	0.60153174	4821	Q9HAB8	PPCS	Phosphopantothenate--cysteine ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.42		2						4	4	2	2	3	3	75.07	67.29	2	1.8098E-07	34490	160513_QHF_FH_JSI9Kac_5	142.43	114.25			0.96348	0.98482	62.149	10	3	Median	0.78248	0.67251	53.72	2	1	Median	1.6953	2.0305	114.06	2	0	Median	0.55245	0.51831	35.536	3	2	Plateau	1.029	1.1285	18.156	3	0	Median	1125100000	652950000	472130000	329960000	223210000	106760000	170470000	28151000	142320000	429180000	314960000	114220000	195470000	86630000	108840000	42384	4821	39898	258162;258163;258164;258165;258166;258167;258168;258169;258170;258171	346086;346087;346088;346089;346090;346091;346092;346093;346094;346095;346096;346097;346098	346088			13	
QSFVGMLTITDFINILHR	0	Unmodified	2104.1139	0.11393091	1825	P54619;Q9UGJ0	PRKAG1;PRKAG2	5'-AMP-activated protein kinase subunit gamma-1;5'-AMP-activated protein kinase subunit gamma-2	yes	no	0	0	0	0		By MS/MS			16	0									1		1			98.013	92.293	3	3.7925E-06	53889	160513_QHF_FH_JSI10Kac_6	148.52	125.19			0.83252	0.98175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83252	0.98175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119520000	70955000	48570000	0	0	0	119520000	70955000	48570000	0	0	0	0	0	0	42385	1825	39899	258172	346099	346099			1	
QSGAFLSTSEGLILQLVGDAVHPQFK	1	Unmodified	2741.4388	0.4388301	3964	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.75	5.93		2	1						1	1	1	2		102.29	99.972	3	7.6585E-16	91083	160511_QHF_FH_JSI11i_2	99.135	91.942			0.84091	0.89485	9.4575	4	1	Median	1.1469	0.95879	NaN	1	1	Median	0.74415	0.90932	NaN	1	0	Median	0.82802	0.82247	9.6607	2	0	Median	NaN	NaN	NaN	0	0	Median	221020000	92806000	128220000	134610000	43499000	91109000	32371000	18840000	13531000	54043000	30467000	23576000	0	0	0	42386	3964	39900	258173;258174;258175;258176	346100;346101;346102;346103;346104	346102			5	
QSGEAFVELGSEDDVK	1	Unmodified	1708.7792	0.77917435	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.45	6		3			2				3	5	1	2	57.661	55.795	2;3	1.4763E-97	50317	160511_QHF_FH_JSI10i_1	256.77	228.59			0.92276	0.96922	11.713	8	1	Median	1.1571	0.94856	8.7444	2	0	Median	0.79239	0.94023	15.762	3	1	Median	1.0322	0.9991	NaN	1	0	Median	0.83983	0.90086	17.27	2	0	Median	2719600000	1386200000	1333400000	559000000	292090000	266910000	870110000	481220000	388890000	645820000	322250000	323580000	644660000	290670000	354000000	42387	1775	39901	258177;258178;258179;258180;258181;258182;258183;258184;258185;258186;258187	346105;346106;346107;346108;346109;346110;346111;346112;346113;346114;346115;346116;346117;346118;346119;346120;346121;346122;346123;346124;346125	346117			21	
QSGESIDIITR	0	Unmodified	1217.6252	0.62518031	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	3	3	1	47.193	41.854	2	4.2865E-07	38018	160511_QHF_FH_JSI12i_1	117.09	89.788			0.81176	0.86111	16.583	8	1	Median	1.1525	0.9371	NaN	1	1	Median	0.61726	0.75379	13.217	3	0	Plateau	0.69575	0.67609	26.247	3	0	Plateau	0.8318	0.87555	NaN	1	0	Median	1176700000	678340000	498320000	182630000	86114000	96514000	286000000	184870000	101130000	387550000	229280000	158270000	320490000	178080000	142410000	42388	2734	39902	258188;258189;258190;258191;258192;258193;258194;258195	346126;346127;346128;346129;346130;346131;346132;346133;346134	346128			9	
QSGGAGQYGK	1	Unmodified	951.44101	0.44100836	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	5.3898	5.0667	2	0.0015161	3067	160511_QHF_FH_JSI12i_1	65.404	37.186			0.94126	0.84519	19.851	4	1	Linear	1.2483	1.0057	NaN	1	0	Median	1.0091	1.2035	NaN	1	1	Median	0.76823	0.75248	NaN	1	0	Median	0.87802	0.8871	NaN	1	0	Median	732090000	368300000	363790000	179060000	68468000	110590000	183970000	108820000	75154000	188380000	108160000	80218000	180680000	82851000	97827000	42389	4221	39903	258196;258197;258198;258199	346135;346136;346137	346135			3	
QSGQTDPLQK	1	Unmodified	1100.5462	0.54620171	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		14.226	13.985	2	0.0043506	11597	160511_QHF_FH_JSI10i_1	66.19	50.528			0.41384	0.4868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41384	0.4868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28588000	21620000	6968400	0	0	0	28588000	21620000	6968400	0	0	0	0	0	0	42390	1600	39904	258200;258201;258202	346138;346139;346140	346140			3	
QSGSLPLSSLTHVLR	0	Unmodified	1593.8839	0.88385462	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			75.064	73.973	3	0.0042929	62202	160511_QHF_FH_JSI10i_3	42.382	36.004			0.57127	0.686	53.566	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57127	0.686	53.566	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23844000	15661000	8182800	0	0	0	23844000	15661000	8182800	0	0	0	0	0	0	42391	2402	39905	258203;258204	346141;346142	346141			2	
QSGYGGQTK	1	Unmodified	924.43011	0.43010932	2122;3945	P83881;Q969Q0	RPL36A;RPL36AL	60S ribosomal protein L36a;60S ribosomal protein L36a-like	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0775	4.762	2	0.001917	2514	160511_QHF_FH_JSI9i_1	66.962	50.186			0.91575	0.89972	17.472	4	0	Median	0.95041	0.79194	NaN	1	0	Median	0.88235	1.0222	NaN	1	0	Median	1.0999	1.0861	NaN	1	0	Median	0.74477	0.77093	NaN	1	0	Median	720040000	353680000	366360000	143340000	75039000	68302000	206560000	100280000	106280000	176900000	68340000	108560000	193230000	110010000	83221000	42392	2122;3945	39906	258205;258206;258207;258208	346143;346144;346145;346146	346145			3	
QSGYGGQTKPIFR	1	Unmodified	1437.7365	0.7364621	2122;3945	P83881;Q969Q0	RPL36A;RPL36AL	60S ribosomal protein L36a;60S ribosomal protein L36a-like	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	7	6.38		2	2						2	2	3		1	29.3	25.618	3	4.4618E-05	20683	160511_QHF_FH_JSI9i_3	109	94.311			0.20946	0.22472	65.728	6	6	Median	0.20946	0.17566	12.303	2	2	Median	0.19571	0.22846	84.927	3	3	Median	NaN	NaN	NaN	0	0	Median	0.32725	0.35034	NaN	1	1	Median	970780000	775480000	195290000	499080000	399880000	99202000	466900000	371930000	94967000	0	0	0	4793300	3670800	1122500	42393	2122;3945	39907	258209;258210;258211;258212;258213;258214	346147;346148;346149;346150;346151;346152	346148			6	
QSHAASAAPQASSPPDYTMAWAEYYR	0	Unmodified	2855.2609	0.26094209	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.506	71.22	3	0.00091467	61415	160511_QHF_FH_JSI12i_2	37.642	34.655			1.2957	1.4653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2957	1.4653	NaN	1	1	Median	10848000	3744800	7102900	0	0	0	0	0	0	0	0	0	10848000	3744800	7102900	42394	4118	39908	258215	346153	346153			1	
QSHKPLR	1	Acetyl (K)	906.50355	0.50354903	3056	Q6IE81	JADE1	Protein Jade-1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	8.0368	0.46626	2;3	0.0078569	2717	160513_QHF_FH_JSI12Kac_6	61.962	39.831			0.82194	0.97731	10.359	4	0	Linear	0.98598	0.83988	NaN	1	0	Median	0.81645	0.98261	NaN	1	0	Median	1.0955	1.0793	NaN	1	0	Median	0.8995	0.97203	NaN	1	0	Median	53189000	29721000	23467000	8086100	4039000	4047100	26050000	14575000	11475000	3855300	1919500	1935700	15198000	9187800	6009800	42395	3056	39909	258216;258217;258218;258219	346154;346155;346156;346157;346158	346155	2749		5	
QSHSESPSLQSK	1	Unmodified	1313.6212	0.62115757	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.85		7	2					1		2	2	3	3	7.8414	6.5825	2;3	5.3177E-11	5286	160511_QHF_FH_JSI10i_2	149.96	110.65			1.1565	1.1154	14.828	9	2	Median	1.3099	1.1109	0.57334	2	0	Median	0.89277	1.0846	0.41543	2	0	Median	1.2178	1.2179	9.12	2	0	Median	1.4591	1.4825	27.43	3	2	Plateau	549760000	255980000	293780000	44509000	20127000	24383000	201070000	110180000	90886000	187630000	70915000	116710000	116560000	54762000	61798000	42396	5474	39910	258220;258221;258222;258223;258224;258225;258226;258227;258228;258229	346159;346160;346161;346162;346163;346164;346165;346166;346167;346168;346169	346168			11	
QSHTLPFPPPPALPFYPASAYPR	0	Unmodified	2550.306	0.30596543	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		100.72	100.62	3	2.7346E-09	88267	160511_QHF_FH_JSI11i_2	86.856	78.983			0.97062	1.0617	7.0569	3	0	Median	1.2372	1.0617	NaN	1	0	Median	0.90217	1.1152	NaN	1	0	Median	0.97062	0.97033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	188500000	99781000	88722000	38805000	16263000	22542000	61438000	31801000	29637000	88259000	51717000	36542000	0	0	0	42397	5147	39911	258230;258231;258232	346170;346171;346172;346173	346171			4	
QSIAIDDCTFHQCVR	0	Unmodified	1848.8247	0.82470153	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.706	46.193	3	0.012596	39729	160511_QHF_FH_JSI11i_2	36.593	19.104			0.92141	0.94171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92141	0.94171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34518000	17182000	17336000	0	0	0	0	0	0	34518000	17182000	17336000	0	0	0	42398	4017	39912	258233	346174	346174			1	
QSIDALK	1	Unmodified	773.42832	0.42831841	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.333	20.812	2	0.019577	17952	160511_QHF_FH_JSI11i_1	58.119	14.996			0.8333	0.91958	17.528	4	0	Median	1.4489	1.2074	NaN	1	0	Median	0.81959	0.96054	NaN	1	0	Median	0.82491	0.80183	NaN	1	0	Median	0.84178	0.88036	NaN	1	0	Median	820360000	396400000	423960000	212510000	83034000	129480000	159590000	99989000	59603000	208430000	110510000	97914000	239830000	102860000	136970000	42399	454	39913	258234;258235;258236;258237	346175;346176;346177	346175			3	
QSIIDLK	1	Unmodified	815.47527	0.4752686	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	42.316	41.797	2	0.017049	38053	160511_QHF_FH_JSI12i_1	62.107	5.3864			1.0475	1.1598	12.994	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0789	1.2715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0171	1.058	NaN	1	0	Median	92625000	46091000	46534000	0	0	0	46395000	21133000	25262000	0	0	0	46230000	24957000	21273000	42400	3896	39914	258238;258239	346178;346179	346178			2	
QSIIVAASSR	0	Unmodified	1030.5771	0.57710791	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	2	1	1	36.368	26.909	2	0.00076084	15184	160513_QHF_FH_JSI9Kac_5	86.898	43.09			0.87191	0.954	19.596	5	0	Median	1.2194	0.98936	NaN	1	0	Median	0.93489	1.106	20.904	2	0	Median	0.87191	0.83879	NaN	1	0	Median	0.70106	0.76566	NaN	1	0	Median	22724000	11557000	11167000	5446800	2527100	2919700	8773700	4157800	4615900	7029400	4029000	3000400	1473800	842990	630840	42401	5627	39915	258240;258241;258242;258243;258244	346180;346181;346182;346183	346181			4	
QSILILK	1	Unmodified	813.53239	0.53238955	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	2	1	1	54.858	51.946	2	0.04193	45707	160511_QHF_FH_JSI10i_2	46.426	13.955			0.99322	1.0743	5.0202	5	0	Median	1.1566	0.98726	NaN	1	0	Median	0.86195	1.0429	4.1941	2	0	Median	1.073	1.0809	NaN	1	0	Median	0.99322	1.1152	NaN	1	0	Median	383390000	197470000	185930000	66401000	36391000	30010000	93916000	52294000	41622000	129050000	62717000	66334000	94026000	46066000	47960000	42402	1401;4636	39916	258245;258246;258247;258248;258249	346184;346185;346186;346187	346186			4	
QSILNSLSR	0	Unmodified	1016.5615	0.56145784	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			44.276	42.73	2	0.010008	35613	160511_QHF_FH_JSI10i_3	59.153	38.871			0.70098	0.81805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70098	0.81805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37568000	21742000	15826000	0	0	0	37568000	21742000	15826000	0	0	0	0	0	0	42403	4623	39917	258250	346188	346188			1	
QSILPPPQGPAPIPFQHR	0	Unmodified	1979.0741	0.074115002	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		70.826	70.083	3	0.0001144	61781	160511_QHF_FH_JSI9i_2	58.159	52.616			0.54738	0.61722	30.145	5	3	Median	0.72482	0.61722	NaN	1	0	Median	0.6353	0.74922	13.792	2	1	Median	0.449	0.42488	12.749	2	2	Median	NaN	NaN	NaN	0	0	Median	148280000	90073000	58208000	35597000	21154000	14443000	51962000	30616000	21346000	60724000	38303000	22420000	0	0	0	42404	4751	39918	258251;258252;258253;258254;258255	346189;346190;346191;346192;346193	346191			5	
QSISNFHVLLLQTETR	0	Unmodified	1885.0058	0.005760665	3523	Q8N3X1	FNBP4	Formin-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	77.374	69.271	3	1.2714E-07	37038	160513_QHF_FH_JSI9Kac_6	111.66	101.07			0.97164	0.98949	15.222	2	0	Median	1.0159	0.88852	NaN	1	0	Median	0.92932	1.1019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166890000	85199000	81695000	36010000	17946000	18064000	99874000	51990000	47884000	0	0	0	31010000	15263000	15747000	42405	3523	39919	258256;258257;258258	346194;346195	346194			2	
QSIWTSTISSHLATK	1	Unmodified	1658.8628	0.86278482	927	P09417	QDPR	Dihydropteridine reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	60.702	59.642	2;3	6.5373E-21	52883	160511_QHF_FH_JSI11i_3	131.06	87.547			0.87435	1.0116	41.537	6	0	Median	1.7095	1.4062	42.995	2	0	Median	0.87435	1.0183	4.5055	2	0	Median	0.76808	0.72555	NaN	1	0	Median	0.49778	0.55539	NaN	1	0	Median	768630000	396280000	372350000	198000000	79549000	118450000	236040000	128080000	107960000	260900000	147030000	113880000	73690000	41629000	32061000	42406	927	39920	258259;258260;258261;258262;258263;258264;258265	346196;346197;346198;346199;346200;346201;346202;346203;346204;346205;346206	346197			11	
QSKPVTTPEEIAQVATISANGDK	2	Unmodified	2383.2231	0.22308324	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.48	4.01	5	12	7				1	2		5	8	6	8	66.036	64.143	2;3;4	1.1535E-103	56176	160511_QHF_FH_JSI11i_2	197.69	190.15			1.059	1.0664	22.009	26	4	Median	1.064	0.91745	13.136	5	0	Median	0.82068	1.0047	33.412	8	2	Median	1.0761	1.0723	13.395	6	1	Median	1.1265	1.1898	12.85	7	1	Median	5055300000	2501800000	2553500000	889870000	458480000	431380000	1104700000	594230000	510450000	1357400000	655620000	701810000	1703300000	793430000	909870000	42407	980	39921	258266;258267;258268;258269;258270;258271;258272;258273;258274;258275;258276;258277;258278;258279;258280;258281;258282;258283;258284;258285;258286;258287;258288;258289;258290;258291;258292	346207;346208;346209;346210;346211;346212;346213;346214;346215;346216;346217;346218;346219;346220;346221;346222;346223;346224;346225;346226;346227;346228;346229;346230;346231;346232;346233;346234;346235;346236;346237;346238;346239;346240;346241;346242;346243;346244;346245;346246;346247;346248;346249;346250;346251;346252;346253;346254;346255;346256;346257;346258;346259;346260;346261;346262;346263	346242			57	
QSLAQSHLPAQPDISPNIFEAVK	1	Unmodified	2489.2914	0.29143758	177	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		84.621	84.621	3	0.0011789	75521	160511_QHF_FH_JSI11i_3	44.258	35.549			1.3825	1.3239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3825	1.3239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10455000	2920400	7534500	0	0	0	0	0	0	10455000	2920400	7534500	0	0	0	42408	177	39922	258293;258294	346264;346265	346264			2	
QSLDAVEK	1	Unmodified	888.45526	0.45526144	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.851	16.379	2	0.013192	13732	160511_QHF_FH_JSI9i_1	52.549	23.631			1.2299	1.2056	14.606	4	1	Median	1.3889	1.1547	NaN	1	0	Median	1.1903	1.4092	NaN	1	0	Median	1.2708	1.2588	NaN	1	1	Median	0.96771	0.99668	NaN	1	0	Median	513690000	205060000	308630000	118800000	38153000	80645000	111010000	51186000	59824000	112030000	40734000	71294000	171850000	74985000	96870000	42409	1704	39923	258295;258296;258297;258298	346266;346267;346268	346268			3	
QSLDDAAK	1	Unmodified	846.40831	0.40831125	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	9.6339	9.082	2	0.036122	6990	160511_QHF_FH_JSI12i_1	48.794	17.491			1.3933	1.2673	34.235	2	2	Median	1.2355	0.99485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5712	1.6144	NaN	1	1	Median	450200000	232830000	217370000	261510000	139360000	122150000	0	0	0	0	0	0	188690000	93468000	95223000	42410	1085	39924	258299;258300	346269;346270	346269			2	
QSLDQVTNR	0	Unmodified	1059.5309	0.530886	471	O75071	EFCAB14	EF-hand calcium-binding domain-containing protein 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		41.927	41.555	2	0.010906	37250	160511_QHF_FH_JSI10i_1	49.418	12.227			0.82786	0.88193	13.816	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83556	0.97244	NaN	1	0	Median	0.82022	0.79985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	689270000	353330000	335950000	0	0	0	336800000	166490000	170310000	352470000	186840000	165630000	0	0	0	42411	471	39925	258301;258302	346271;346272	346272			2	
QSLEASLAETEGR	0	Unmodified	1389.6736	0.67358707	56	P13645;CON__P13645;CON__P02535-1	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				2	0		1								1				43.12	42.069	2	0.0007703	36783	160511_QHF_FH_JSI9i_2	80.522	55.668		+	0.38978	0.34122	NaN	1	1	Median	0.38978	0.34122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18586000	12402000	6184300	18586000	12402000	6184300	0	0	0	0	0	0	0	0	0	42412	56	39926	258303	346273	346273			1	
QSLEEAAK	1	Unmodified	874.43961	0.43961137	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	11.575	9.8666	2	0.0066395	8465	160511_QHF_FH_JSI12i_1	61.962	32.813			1.0085	0.93242	20.537	5	1	Median	1.1024	0.91442	NaN	1	0	Median	0.81336	0.93242	NaN	1	0	Median	1.0085	0.97928	NaN	1	0	Median	1.0042	1.0879	37.578	2	1	Median	1253700000	620730000	633000000	361990000	143330000	218660000	323660000	188970000	134700000	291450000	137970000	153480000	276630000	150460000	126170000	42413	1085	39927	258304;258305;258306;258307;258308	346274;346275;346276;346277	346275			4	
QSLETICLLLAYK	1	Unmodified	1550.8378	0.83781563	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	1	3	2	2	93.538	88.619	2	3.8597E-36	47139	160513_QHF_FH_JSI10Kac_6	210.35	184.23			1.1793	1.2674	38.263	8	6	Median	2.2864	1.9656	NaN	1	1	Median	0.7187	0.87791	25.74	3	3	Median	1.0311	1.0167	41.594	2	1	Median	1.4735	1.6061	6.3234	2	1	Median	403370000	187160000	216210000	23741000	6001200	17739000	137260000	76199000	61066000	142700000	66529000	76167000	99667000	38434000	61233000	42414	1981;1461;1980	39928	258309;258310;258311;258312;258313;258314;258315;258316	346278;346279;346280;346281;346282;346283;346284;346285;346286	346285			9	
QSLEYLEQVR	0	Unmodified	1263.6459	0.64591575	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	51.432	50.643	2	2.2596E-08	43549	160511_QHF_FH_JSI11i_2	126.31	20.114			0.84962	0.90816	14.148	6	1	Median	1.0617	0.90977	NaN	1	0	Median	0.73826	0.88783	18.203	2	0	Median	0.80687	0.80365	17.04	2	0	Median	0.90113	1.0144	NaN	1	1	Median	602690000	334960000	267730000	114320000	59328000	54990000	157140000	90032000	67109000	219290000	135130000	84162000	111940000	50468000	61468000	42415	4559	39929	258317;258318;258319;258320;258321;258322;258323	346287;346288;346289;346290;346291;346292;346293;346294;346295	346292			9	
QSLFATKPGGGALVLLEA	1	Unmodified	1770.988	0.98798534	2167	Q01415	GALK2	N-acetylgalactosamine kinase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.273	97.292	2	0.045628	84280	160511_QHF_FH_JSI12i_3	60.628	40.166			0.94763	1.0027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94763	1.0027	NaN	1	1	Median	13139000	9669000	3469800	0	0	0	0	0	0	0	0	0	13139000	9669000	3469800	42416	2167	39930	258324	346296	346296			1	
QSLFFYPSYPDEVR	0	Unmodified	1746.8253	0.82533668	1071	P15289	ARSA	Arylsulfatase A;Arylsulfatase A component B;Arylsulfatase A component C	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.33	83.268	2	3.4686E-07	71983	160511_QHF_FH_JSI12i_2	104.87	90.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42417	1071	39931	258325	346297	346297			1	
QSLGELIGTLNAAK	1	Unmodified	1413.7827	0.78274359	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.76	6.18	8	8	8					2	7	8	7	10	8	82.226	79.289	2;3	7.1344E-81	72902	160511_QHF_FH_JSI11i_3	291.5	240.43			0.99492	0.98399	11.859	33	1	Median	1.182	0.9626	5.5448	8	0	Median	0.95515	1.1175	16.847	7	0	Median	0.94418	0.93861	8.7524	10	1	Median	0.96939	1.0567	7.8476	8	0	Median	26422000000	12380000000	14041000000	4238700000	2003100000	2235600000	7266800000	3526300000	3740500000	7223600000	3477900000	3745800000	7692400000	3373100000	4319200000	42418	1908	39932	258326;258327;258328;258329;258330;258331;258332;258333;258334;258335;258336;258337;258338;258339;258340;258341;258342;258343;258344;258345;258346;258347;258348;258349;258350;258351;258352;258353;258354;258355;258356;258357;258358	346298;346299;346300;346301;346302;346303;346304;346305;346306;346307;346308;346309;346310;346311;346312;346313;346314;346315;346316;346317;346318;346319;346320;346321;346322;346323;346324;346325;346326;346327;346328;346329;346330;346331;346332;346333;346334;346335;346336;346337;346338;346339;346340;346341;346342;346343;346344;346345;346346;346347;346348;346349;346350;346351;346352;346353;346354;346355;346356;346357;346358;346359;346360;346361;346362;346363;346364;346365;346366;346367;346368;346369;346370;346371;346372;346373;346374;346375;346376;346377;346378;346379;346380;346381;346382;346383;346384;346385;346386;346387;346388;346389;346390;346391;346392;346393;346394;346395	346304			97	
QSLGHPPPEPGPDR	0	Unmodified	1482.7215	0.72154031	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	20.225	19.714	3	0.0040576	16765	160511_QHF_FH_JSI9i_2	34.277	24.22			1.2638	1.1011	15.39	4	2	Linear	1.4528	1.2553	NaN	1	0	Median	1.0993	1.3421	NaN	1	1	Median	1.0176	1.0257	NaN	1	0	Median	1.4559	1.4747	NaN	1	1	Median	209580000	99412000	110170000	58637000	21785000	36852000	54626000	27292000	27334000	61470000	35324000	26146000	34846000	15011000	19834000	42419	1043	39933	258359;258360;258361;258362;258363	346396;346397;346398;346399;346400	346397			5	
QSLIDWNNPAIINK	1	Unmodified	1624.8573	0.85730551	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	79.616	78.857	2	3.4574E-06	68021	160511_QHF_FH_JSI12i_2	130.1	113.11			0.57914	0.59817	6.0336	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63887	0.62425	NaN	1	1	Median	0.52499	0.57319	NaN	1	1	Median	116310000	74765000	41541000	0	0	0	0	0	0	55112000	33879000	21233000	61194000	40886000	20308000	42420	2997	39934	258364;258365	346401;346402	346402			2	
QSLLDMAQTWGEFR	0	Unmodified	1680.793	0.7929907	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.95	100.97	2	2.1226E-06	87580	160511_QHF_FH_JSI12i_3	129.71	115.55			1.3717	1.3671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3717	1.3671	NaN	1	0	Median	61299000	24855000	36444000	0	0	0	0	0	0	0	0	0	61299000	24855000	36444000	42421	286	39935	258366;258367	346403;346404	346404			2	
QSLNCLTK	1	Unmodified	962.48552	0.48551571	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.423	20.902	2	0.0072422	18444	160511_QHF_FH_JSI12i_1	60.118	34.179			1.1016	1.0201	23.104	4	0	Median	1.4649	1.1908	NaN	1	0	Median	0.74091	0.86258	NaN	1	0	Median	0.90099	0.87387	NaN	1	0	Median	1.347	1.3731	NaN	1	0	Median	300670000	147710000	152960000	35188000	14038000	21150000	72011000	43159000	28852000	109270000	54451000	54819000	84198000	36062000	48136000	42422	380	39936	258368;258369;258370;258371	346405;346406	346406			2	
QSLPATSIPTPASFK	1	Unmodified	1543.8246	0.8246084	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								3	3	2	2	69.737	69.147	2	7.8085E-08	62890	160511_QHF_FH_JSI11i_1	97.716	62.064			0.89407	0.95742	24.943	7	6	Median	1.0947	0.92392	40.909	2	1	Median	0.75802	0.90242	29.485	3	3	Median	1.0589	1.0075	NaN	1	1	Median	0.89407	0.95742	NaN	1	1	Median	352920000	199560000	153350000	76031000	36173000	39858000	112720000	68355000	44360000	72387000	36837000	35550000	91783000	58196000	33587000	42423	1685	39937	258372;258373;258374;258375;258376;258377;258378;258379;258380;258381	346407;346408;346409;346410;346411;346412;346413;346414;346415;346416	346408			10	
QSLPPGLAVK	1	Unmodified	1008.5968	0.59678072	2056	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.05	5	5				3	5			4	5	5	4	49.882	44.616	2	2.2811E-07	40378	160511_QHF_FH_JSI12i_1	115.71	95.432			0.91203	0.93651	12.499	17	5	Median	1.0304	0.8892	9.7415	3	2	Median	0.82661	0.97589	20.217	5	1	Median	0.91203	0.90854	8.5106	5	1	Median	0.91667	0.96683	3.1809	4	1	Linear	4350500000	2327200000	2023400000	1201200000	661070000	540180000	1088500000	623700000	464830000	1170500000	590350000	580150000	890240000	452060000	438190000	42424	2056	39938	258382;258383;258384;258385;258386;258387;258388;258389;258390;258391;258392;258393;258394;258395;258396;258397;258398;258399	346417;346418;346419;346420;346421;346422;346423;346424;346425;346426;346427;346428;346429;346430;346431;346432;346433;346434;346435;346436;346437;346438;346439;346440;346441;346442;346443;346444;346445;346446;346447;346448;346449;346450;346451;346452;346453;346454;346455;346456;346457;346458;346459;346460;346461;346462;346463;346464;346465	346431			49	
QSLPPGLAVKELK	2	Acetyl (K)	1420.829	0.8289655	2056	P63173	RPL38	60S ribosomal protein L38	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	1	2	76.907	66.297	2;3	0.0011908	35182	160513_QHF_FH_JSI10Kac_4	80.318	69.561			0.87194	0.92566	4.6909	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7485	0.89431	NaN	1	0	Median	0.9989	0.98426	NaN	1	0	Median	0.87194	0.92566	4.2749	2	0	Median	40357000	21701000	18656000	0	0	0	15676000	8736700	6939600	6843800	3448100	3395800	17837000	9515900	8321000	42425	2056	39939	258400;258401;258402;258403	346466;346467;346468;346469;346470	346466	2121		4	
QSLQVIESAMER	0	Unmodified	1389.6922	0.69221402	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	62.735	59.835	2	3.5929E-32	52968	160511_QHF_FH_JSI10i_2	196.24	147.44			0.84328	0.87858	18.747	5	2	Median	1.0092	0.8798	NaN	1	0	Median	0.84328	1.0463	NaN	1	0	Median	0.77861	0.76205	20.123	2	1	Median	0.63128	0.70009	NaN	1	1	Median	689850000	336850000	353010000	124150000	58695000	65458000	177950000	90069000	87880000	247080000	113810000	133260000	140680000	74269000	66409000	42426	2759	39940	258404;258405;258406;258407;258408	346471;346472;346473;346474;346475;346476;346477;346478	346478			8	
QSLQVIESAMERDR	0	Unmodified	1660.8203	0.82026808	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			56.232	55.268	3	0.0030378	48747	160511_QHF_FH_JSI10i_2	51.771	34.282			1.8972	1.9874	50.175	2	1	Median	3.2122	2.8338	NaN	1	1	Median	1.1205	1.3938	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277140000	112560000	164580000	101410000	25431000	75983000	175730000	87130000	88595000	0	0	0	0	0	0	42427	2759	39941	258409;258410	346479;346480	346480			2	
QSLSFSTCGK	1	Unmodified	1113.5125	0.51245874	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.7	0.471						2	4				3	1	2	39.975	30.569	2	0.00044352	17457	160513_QHF_FH_JSI10Kac_4	79.986	56.666			0.95232	1.0251	22.893	5	1	Median	NaN	NaN	NaN	0	0	Median	0.914	1.0744	13.628	2	1	Median	0.68541	0.66759	NaN	1	0	Median	1.0058	1.0844	7.9524	2	0	Median	43195000	22350000	20845000	0	0	0	14357000	7520400	6836500	10789000	6677000	4111700	18049000	8152600	9896900	42428	648	39942	258411;258412;258413;258414;258415;258416	346481;346482;346483;346484;346485;346486;346487;346488;346489	346482			9	
QSLSHMLSAK	1	Unmodified	1100.5648	0.56482866	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	3	2	27.272	26.7	2;3	0.00026721	21916	160511_QHF_FH_JSI12i_3	56.936	53.236			1.2868	1.441	54.147	10	3	Median	1.7061	1.4484	2.5731	2	1	Median	1.3133	1.5562	4.7785	3	1	Median	0.89009	0.8215	76.645	3	1	Plateau	0.55516	0.57238	15.47	2	0	Median	1774400000	865550000	908800000	245890000	104790000	141100000	281110000	132730000	148370000	529150000	267720000	261420000	718210000	360310000	357900000	42429	1804	39943	258417;258418;258419;258420;258421;258422;258423;258424;258425;258426	346490;346491;346492;346493;346494;346495;346496;346497	346496			7	
QSLSHMLSAK	1	Oxidation (M)	1116.5597	0.55974328	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	26.402	26.383	2	0.015143	21992	160511_QHF_FH_JSI12i_3	48.188	25.145			2.1507	2.0562	7.3098	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1306	1.9526	NaN	1	0	Median	2.1711	2.1653	NaN	1	0	Median	81901000	35728000	46173000	0	0	0	0	0	0	28216000	10302000	17915000	53685000	25426000	28258000	42430	1804	39943	258427;258428	346498	346498		1490	1	
QSLTMDPVVK	1	Unmodified	1116.5849	0.5848954	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	44.617	43.951	2	2.927E-08	39133	160511_QHF_FH_JSI9i_1	125.97	111.81			1.1215	0.99907	16.522	4	1	Median	1.1582	0.94046	NaN	1	0	Median	0.6993	0.83041	NaN	1	1	Median	1.0907	1.0613	NaN	1	0	Median	1.1531	1.2217	NaN	1	0	Median	3029700000	1625400000	1404300000	639850000	339380000	300470000	740920000	438580000	302340000	848480000	434650000	413820000	800450000	412810000	387640000	42431	1417	39944	258429;258430;258431;258432;258433	346499;346500;346501;346502;346503;346504;346505;346506;346507	346507			9	
QSLTMDPVVK	1	Oxidation (M)	1132.5798	0.57981002	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	37.767	29.192	2	0.041712	16616	160513_QHF_FH_JSI12Kac_3	53.756	33.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42432	1417	39944	258434	346508	346508			1	
QSLVDMAPK	1	Unmodified	987.50592	0.5059168	1157	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	41.016	40.379	2	0.00030133	36729	160511_QHF_FH_JSI12i_1	83.278	75.046			0.94316	0.85632	16.122	4	0	Median	1.0697	0.86816	NaN	1	0	Median	0.62772	0.73154	NaN	1	0	Median	0.86148	0.84463	NaN	1	0	Median	1.0326	1.0808	NaN	1	0	Median	439740000	234570000	205170000	82284000	41687000	40598000	105700000	58433000	47268000	127560000	67353000	60210000	124190000	67100000	57093000	42433	1157	39945	258435;258436;258437;258438	346509;346510	346509			1	
QSLVELEDRFLGLTDTASK	1	Unmodified	2121.0954	0.095363533	5094	Q9NX57	RAB20	Ras-related protein Rab-20	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	99.336	99.355	3	0.011367	86074	160511_QHF_FH_JSI12i_3	40.432	27.202			2.2985	2.168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2985	2.168	NaN	1	1	Median	31395000	10508000	20887000	0	0	0	0	0	0	0	0	0	31395000	10508000	20887000	42434	5094	39946	258439	346511	346511			1	
QSLVLPHSTK	1	Unmodified	1108.6241	0.6240581	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	26.826	25.55	2	0.0016684	20984	160511_QHF_FH_JSI11i_2	68.657	51.881			0.55536	0.58094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55536	0.58094	NaN	1	1	Median	7122000	5255800	1866200	0	0	0	0	0	0	0	0	0	7122000	5255800	1866200	42435	4259	39947	258440;258441	346512;346513	346513			2	
QSMISTQNQYSTLSK	1	Unmodified	1714.8196	0.81959938	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	1	3	42.364	41.569	2	7.8065E-40	37468	160511_QHF_FH_JSI11i_1	201.04	183.57			0.86225	0.91565	14.355	4	0	Median	1.3288	1.096	NaN	1	0	Median	0.76764	0.88318	NaN	1	0	Median	0.96851	0.94931	NaN	1	0	Median	0.72577	0.77702	NaN	1	0	Median	411180000	195800000	215380000	54028000	23020000	31008000	120400000	71626000	48778000	139670000	54976000	84692000	97079000	46180000	50899000	42436	2732	39948	258442;258443;258444;258445;258446;258447;258448	346514;346515;346516;346517;346518;346519;346520;346521;346522;346523;346524;346525	346515			12	
QSMWSLLTALSGK	1	Unmodified	1420.7384	0.73843593	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	98.269	94.043	2	1.1149E-67	82616	160511_QHF_FH_JSI9i_3	238.98	203.33			0.88557	0.86565	11.179	8	0	Median	1.069	0.88585	15.184	2	0	Median	0.68077	0.78926	12.811	2	0	Median	1.0146	0.978	1.9895	2	0	Median	0.82005	0.85621	1.8027	2	0	Median	1370600000	694890000	675710000	291940000	125450000	166490000	310440000	180310000	130130000	347390000	161090000	186290000	420840000	228040000	192800000	42437	2594	39949	258449;258450;258451;258452;258453;258454;258455;258456	346526;346527;346528;346529;346530;346531;346532;346533;346534;346535;346536	346531			11	
QSMWSLLTALSGK	1	Oxidation (M)	1436.7334	0.73335055	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				92.152	91.053	2	0.036823	74515	160511_QHF_FH_JSI9i_3	58.676	48.723			1.3475	1.152	NaN	1	1	Median	1.3475	1.152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8211900	3163200	5048700	8211900	3163200	5048700	0	0	0	0	0	0	0	0	0	42438	2594	39949	258457	346537	346537			1	
QSNASSDVEVEEK	1	Unmodified	1420.6318	0.63178183	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.679	14.225	2	4.4419E-99	11918	160511_QHF_FH_JSI12i_1	258.78	250.56			0.99032	0.94927	14.028	4	0	Median	1.0216	0.84649	NaN	1	0	Median	0.77026	0.8977	NaN	1	0	Median	1.1909	1.1642	NaN	1	0	Median	0.95997	1.0038	NaN	1	0	Median	888850000	477210000	411640000	199510000	100020000	99486000	243480000	151650000	91824000	206310000	99966000	106340000	239560000	125570000	113990000	42439	532	39950	258458;258459;258460;258461	346538;346539;346540;346541;346542;346543	346539			6	
QSNNEANLREEVLK	1	Unmodified	1642.8275	0.82746195	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	33.039	32.463	3	0.00016428	28242	160511_QHF_FH_JSI11i_3	79.466	59.726			1.0307	0.96226	15.252	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9364	0.91276	7.469	2	1	Median	1.0574	1.1695	NaN	1	0	Median	428790000	227660000	201120000	0	0	0	0	0	0	351300000	186590000	164710000	77492000	41075000	36416000	42440	3766	39951	258462;258463;258464	346544;346545;346546;346547	346544			4	
QSNPLLIHVDTK	1	Unmodified	1363.746	0.74596415	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.2	6.37		3						2			1	1	3	50.582	46.817	2;3	0.0012978	39988	160511_QHF_FH_JSI12i_2	75.819	57.074			1.0771	1.2194	17.568	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5823	1.5898	NaN	1	1	Median	1.014	1.1575	9.775	3	3	Median	195470000	97782000	97689000	0	0	0	0	0	0	3855200	1325400	2529800	191620000	96456000	95159000	42441	1615	39952	258465;258466;258467;258468;258469	346548;346549;346550;346551;346552	346549			5	
QSNSYDMFMR	0	Unmodified	1277.5169	0.51689219	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.683	47.699	2	0.0001354	41064	160511_QHF_FH_JSI11i_2	83.883	80.296			1.0573	1.1416	10.442	4	0	Median	1.4151	1.2	NaN	1	0	Median	1.0346	1.2732	NaN	1	0	Median	1.0805	1.0861	NaN	1	0	Median	0.88954	1.0063	NaN	1	0	Median	202880000	103390000	99493000	49509000	23112000	26397000	33899000	16866000	17033000	68819000	37433000	31387000	50653000	25977000	24676000	42442	1064	39953	258470;258471;258472;258473	346553;346554;346555	346555			3	
QSNSYDMFMRGEEILSGAQR	0	Unmodified	2318.042	0.041964529	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		82.067	81.413	3	1.0173E-05	71726	160511_QHF_FH_JSI9i_2	76.539	68.351			0.92176	0.92915	50.032	2	0	Median	1.5687	1.3235	NaN	1	0	Median	0.54161	0.65229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	167450000	85718000	81736000	50421000	17969000	32452000	117030000	67749000	49284000	0	0	0	0	0	0	42443	1064	39954	258474;258475;258476	346556;346557;346558	346557			3	
QSPAKVQSKNKYLHSPESRPVTGER	3	3 Acetyl (K)	2948.5104	0.51043191	3818	Q8WYB5	KAT6B	Histone acetyltransferase KAT6B	yes	yes	3	0	0	4	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	54.318	44.979	4	2.4546E-27	24757	160513_QHF_FH_JSI10Kac_6	138.92	119.43			0.90829	0.95873	93.828	4	1	Median	0.18372	0.15097	NaN	1	1	Median	0.87587	1.0378	NaN	1	0	Median	0.97249	0.94817	NaN	1	0	Median	0.94191	0.96942	NaN	1	0	Median	111970000	56709000	55263000	6479300	6261600	217780	62868000	30341000	32526000	23507000	11048000	12459000	19119000	9058600	10060000	42444	3818	39955	258477;258478;258479;258480	346559;346560;346561;346562;346563;346564;346565;346566	346566	2946;2947;2948		8	
QSPGEVGDR	0	Unmodified	943.43592	0.43592298	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.3822	7.0465	2	0.00088814	4938	160511_QHF_FH_JSI12i_1	72.23	51.531			1.0534	0.95428	13.377	4	0	Median	1.1195	0.91814	NaN	1	0	Median	0.83233	0.963	NaN	1	0	Median	0.99131	0.94564	NaN	1	0	Median	1.1892	1.2275	NaN	1	0	Median	301950000	151890000	150060000	74969000	36227000	38742000	84462000	44056000	40406000	62209000	32614000	29596000	80312000	38993000	41319000	42445	3083	39956	258481;258482;258483;258484	346567;346568;346569;346570;346571	346568			5	
QSPTLQR	0	Unmodified	828.44537	0.44536545	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	2	3	2	10.77	8.5943	2	0.0072762	7057	160511_QHF_FH_JSI11i_2	88.029	30.565			0.92484	0.97501	14.184	8	1	Median	1.5157	1.2943	NaN	1	0	Median	0.77266	0.93672	2.4903	2	0	Median	0.99446	0.95082	17.052	3	1	Median	0.92484	1.0263	4.0735	2	0	Median	1224200000	630310000	593910000	137900000	61456000	76447000	501360000	292460000	208910000	462410000	215480000	246930000	122530000	60917000	61618000	42446	1824	39957	258485;258486;258487;258488;258489;258490;258491;258492	346572;346573;346574;346575;346576;346577;346578;346579;346580	346577			9	
QSQADYETR	0	Unmodified	1096.4785	0.47851608	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.3869	7.0511	2	0.0023049	4899	160511_QHF_FH_JSI12i_1	74.6	55.818			1.5116	1.2466	12.382	4	4	Linear	1.6166	1.3173	NaN	1	1	Median	1.286	1.5092	NaN	1	1	Median	1.2082	1.1797	NaN	1	1	Median	1.0785	1.1505	NaN	1	1	Median	212390000	87856000	124530000	58757000	21697000	37060000	56384000	23976000	32408000	54164000	22373000	31791000	43083000	19809000	23274000	42447	4881	39958	258493;258494;258495;258496	346581;346582;346583;346584;346585	346582			5	
QSQDEPLR	0	Unmodified	971.46722	0.46722311	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	10.116	7.4163	2	0.0035516	6924	160511_QHF_FH_JSI12i_1	71.692	42.119			1.161	1.0564	22.414	6	0	Median	1.2588	1.0221	NaN	1	0	Median	1.1312	1.3198	28.142	2	0	Median	1.3064	1.2753	29.959	2	0	Median	0.9698	1.006	NaN	1	0	Median	2093100000	1094900000	998200000	425280000	196690000	228580000	546800000	307880000	238920000	628760000	329590000	299170000	492290000	260750000	231530000	42448	2360	39959	258497;258498;258499;258500;258501;258502	346586;346587;346588;346589	346587			4	
QSQEASNHSSHTAQTPGI	0	Unmodified	1878.8456	0.84563121	4969	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	13.409	12.844	3	7.2605E-05	9962	160511_QHF_FH_JSI11i_2	49.425	43.521			0.97636	1.1397	12.984	4	1	Median	1.3911	1.2039	NaN	1	0	Median	0.87068	1.0819	NaN	1	0	Median	0.90517	0.9131	NaN	1	0	Median	1.0531	1.2005	NaN	1	1	Median	196450000	95533000	100920000	41659000	19650000	22008000	48368000	21154000	27214000	71299000	35314000	35985000	35129000	19414000	15715000	42449	4969	39960	258503;258504;258505;258506;258507	346590;346591;346592;346593;346594;346595;346596	346593			7	
QSQETEARPSIMK	1	Unmodified	1503.7351	0.73514147	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			19.416	18.628	3	0.060349	15869	160511_QHF_FH_JSI10i_2	25.322	17.541			0.7318	0.88654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7318	0.88654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43264000	24290000	18974000	0	0	0	43264000	24290000	18974000	0	0	0	0	0	0	42450	2584	39961	258508	346597	346597			1	
QSQIQVFEDGADTTSPETPDSSASK	1	Unmodified	2624.1726	0.17256381	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		56.172	55.757	2	3.6259E-87	50523	160511_QHF_FH_JSI11i_1	201.96	184.46			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42451	2516	39962	258509	346598	346598			1	
QSQLLALKK	2	Acetyl (K)	1069.6495	0.64954457	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		60.144	49.109	2	0.031768	28008	160513_QHF_FH_JSI11Kac_4	72.643	51.696			0.14967	0.14667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14967	0.14667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2517800	2004100	513740	0	0	0	0	0	0	2517800	2004100	513740	0	0	0	42452	4136	39963	258510	346599	346599			1	
QSQLLALKK	2	Unmodified	1027.639	0.63897988	4136	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				30.287	28.895	2;3	0.0029992	23556	160511_QHF_FH_JSI9i_3	51.268	43.342			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42453	4136	39963	258511;258512	346600;346601	346601			2	
QSQLVQEK	1	Unmodified	958.50836	0.50835964	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.66	10.276	2	0.001279	8013	160511_QHF_FH_JSI10i_1	107.9	32.207			1.0947	1.0148	44.626	4	4	Median	1.1907	0.95162	NaN	1	1	Median	1.0936	1.2889	NaN	1	1	Median	1.0957	1.0821	NaN	1	1	Median	0.44698	0.46635	NaN	1	1	Median	1127000000	817230000	309740000	246120000	148990000	97131000	215190000	138390000	76795000	196620000	130190000	66426000	469040000	399650000	69385000	42454	1493	39964	258513;258514;258515;258516	346602;346603;346604;346605	346604			4	
QSQLVVDWLESIAK	1	Unmodified	1614.8617	0.86172219	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		101.91	101.82	2	6.6046E-05	90393	160511_QHF_FH_JSI10i_2	117.03	103.6			0.60188	0.67535	6.8415	2	1	Median	NaN	NaN	NaN	0	0	Median	0.56687	0.70882	NaN	1	0	Median	0.63905	0.64345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159250000	103020000	56234000	0	0	0	97830000	65094000	32736000	61419000	37921000	23498000	0	0	0	42455	1895	39965	258517;258518	346606;346607	346607			2	
QSQQFNQK	1	Unmodified	1006.4832	0.48320752	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.0151	5.7771	2	0.0048164	3792	160511_QHF_FH_JSI10i_1	75.109	36.318			1.0182	1.179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0182	1.179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100430000	43811000	56616000	0	0	0	100430000	43811000	56616000	0	0	0	0	0	0	42456	3675	39966	258519	346608	346608			1	
QSRGEPPLPEEDLSK	1	Unmodified	1680.8319	0.83187862	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	36.933	36.119	3	0.00033349	31479	160511_QHF_FH_JSI9i_2	67.605	55.46			1.0077	0.91751	15.886	3	1	Plateau	1.0077	0.90283	NaN	1	0	Median	0.76374	0.94158	NaN	1	0	Median	1.1371	1.2111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133940000	63128000	70810000	48103000	21110000	26994000	47067000	28136000	18931000	38767000	13882000	24885000	0	0	0	42457	283	39967	258520;258521;258522;258523;258524	346609;346610;346611;346612;346613;346614	346612			6	
QSSCGKFQTK	2	Acetyl (K)	1211.5605	0.56047157	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	1.46					2	4	2	2	4	2	3	5	4	21.912	13.441	2	6.2222E-56	5519	160513_QHF_FH_JSI9Kac_3	218.11	176.66			0.95029	1.018	26.344	14	0	Median	1.2556	1.0938	6.8599	2	0	Median	0.8564	1.0209	9.2779	3	0	Median	0.91495	0.90318	8.7884	5	0	Median	1.6025	1.7027	27.047	4	0	Median	1811500000	834030000	977430000	295730000	131260000	164470000	317290000	170580000	146700000	447690000	250110000	197580000	750750000	282070000	468680000	42458	4603	39968	258525;258526;258527;258528;258529;258530;258531;258532;258533;258534;258535;258536;258537;258538	346615;346616;346617;346618;346619;346620;346621;346622;346623;346624;346625;346626;346627;346628;346629;346630;346631;346632	346622	3192		18	
QSSCGKFQTKGIK	3	2 Acetyl (K)	1551.7715	0.77152697	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	2	0	0	2		By MS/MS	By MS/MS		14	0							2				1	1		47.955	37.603	2	0.052522	22259	160513_QHF_FH_JSI11Kac_4	57.836	40.4			0.79415	0.82987	12.879	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77934	0.90899	NaN	1	0	Median	0.80924	0.75763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3548000	1940900	1607100	0	0	0	1714900	902040	812870	1833100	1038900	794210	0	0	0	42459	4603	39969	258539;258540	346633	346633	3191;3192		1	
QSSEAEIQAK	1	Unmodified	1089.5302	0.5302173	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	3	1	11.041	9.2645	2	1.5012E-05	7456	160511_QHF_FH_JSI9i_1	100.57	87.532			1.0182	1.0412	21.258	5	0	Median	0.99444	0.83019	NaN	1	0	Median	0.88683	1.0412	NaN	1	0	Median	1.2365	1.2065	28.642	2	0	Median	1.0997	1.1478	NaN	1	0	Median	795750000	407240000	388510000	209710000	118290000	91420000	213630000	117660000	95966000	207010000	90436000	116580000	165400000	80848000	84550000	42460	2636	39970	258541;258542;258543;258544;258545;258546	346634;346635;346636;346637;346638;346639;346640;346641;346642;346643	346643			10	
QSSFALLGDLTK	1	Unmodified	1278.682	0.68196691	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							3	3	1	3	81.421	80.671	2	1.7244E-41	71841	160511_QHF_FH_JSI10i_2	199.12	154.14			0.90736	1.0018	14.127	10	1	Median	1.0538	0.88111	18.175	3	0	Median	0.87405	1.0753	10.352	3	1	Median	1.0627	1.0972	NaN	1	0	Median	0.90779	0.95861	13.269	3	0	Median	1266800000	628180000	638620000	248120000	114890000	133230000	295300000	160020000	135270000	397550000	200950000	196600000	325830000	152320000	173510000	42461	3914;205	39971	258547;258548;258549;258550;258551;258552;258553;258554;258555;258556	346644;346645;346646;346647;346648;346649;346650;346651;346652;346653;346654;346655;346656;346657;346658	346657			15	
QSSGASSSSFSSSR	0	Unmodified	1360.5855	0.58550034	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.66		4					2			1	2	2	1	9.7712	6.541	2	9.3077E-11	4693	160513_QHF_FH_JSI11Kac_4	122.64	118.19			0.86384	0.99122	9.3058	6	0	Median	1.0937	0.91646	NaN	1	0	Median	0.81446	1.0066	4.8943	2	0	Median	0.9233	0.93166	17.35	2	0	Median	0.8924	1.0105	NaN	1	0	Median	292920000	156360000	136560000	62204000	31271000	30932000	111860000	62950000	48915000	84113000	44118000	39994000	34740000	18017000	16723000	42462	154	39972	258557;258558;258559;258560;258561;258562	346659;346660;346661;346662;346663;346664;346665;346666;346667	346662			9	
QSSGSATNVASTPDNR	0	Unmodified	1590.7234	0.72339081	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.598	11.2	2	9.8092E-05	9081	160511_QHF_FH_JSI12i_1	96.734	80.596			0.48432	0.47674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48432	0.47674	NaN	1	1	Median	11688000	7771500	3916400	0	0	0	0	0	0	0	0	0	11688000	7771500	3916400	42463	3266	39973	258563	346668	346668			1	
QSSPQLHNLASYTK	1	Unmodified	1572.7896	0.78961988	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	34.639	34.576	3	0.00014741	29308	160511_QHF_FH_JSI12i_3	89.541	79.484			0.91911	0.89584	3.4752	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93532	0.87409	NaN	1	1	Median	0.90317	0.91813	NaN	1	1	Median	69586000	41863000	27722000	0	0	0	0	0	0	35618000	22501000	13117000	33968000	19363000	14605000	42464	3169	39974	258564;258565	346669;346670	346670			2	
QSSQPAETDSMSLSEK	1	Unmodified	1723.7571	0.7570587	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.402	28.807	2	1.8338E-05	25862	160511_QHF_FH_JSI12i_1	134.61	120.46			1.0502	1.0584	21.79	4	2	Median	1.3967	1.13	NaN	1	1	Median	0.83259	0.99135	NaN	1	0	Median	1.3247	1.2707	NaN	1	1	Median	0.74016	0.7649	NaN	1	0	Median	130730000	61247000	69483000	26621000	9356800	17265000	36831000	22322000	14510000	32227000	11786000	20441000	35050000	17782000	17268000	42465	3356	39975	258566;258567;258568;258569	346671;346672;346673;346674;346675	346673			5	
QSSSASLETLLALLQAEGAK	1	Unmodified	2016.0739	0.07389981	4810	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	101.8	101.71	3	0.032345	88441	160511_QHF_FH_JSI12i_3	23.726	10.071			0.78262	0.71081	18.594	2	0	Median	0.99096	0.81068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61808	0.62323	NaN	1	0	Median	285600000	166370000	119240000	89475000	35598000	53877000	0	0	0	0	0	0	196130000	130770000	65360000	42466	4810	39976	258570;258571	346676	346676			1	
QSSSSRDDNMFQIGK	1	Unmodified	1698.7631	0.76314713	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.58	3	9	7				2	5		6	7	6	7	38.098	34.932	2;3	1.7038E-15	29375	160511_QHF_FH_JSI12i_3	160.27	153.69			0.93219	0.98064	13.873	23	0	Median	1.1812	1.0014	10.073	4	0	Median	0.81355	0.97405	17.216	6	0	Median	1.0102	0.96519	13.356	6	0	Median	0.82038	0.89004	13.589	7	0	Median	6739500000	3386100000	3353400000	1190800000	499290000	691520000	1758000000	944490000	813510000	2575900000	1327600000	1248300000	1214800000	614720000	600080000	42467	1815	39977	258572;258573;258574;258575;258576;258577;258578;258579;258580;258581;258582;258583;258584;258585;258586;258587;258588;258589;258590;258591;258592;258593;258594;258595;258596;258597	346677;346678;346679;346680;346681;346682;346683;346684;346685;346686;346687;346688;346689;346690;346691;346692;346693;346694;346695;346696;346697;346698;346699;346700;346701;346702;346703;346704;346705;346706;346707;346708;346709;346710;346711;346712;346713;346714;346715;346716;346717;346718;346719;346720;346721;346722;346723;346724;346725;346726;346727;346728	346725			52	
QSSSSRDDNMFQIGKMR	1	Acetyl (K)	2027.9153	0.91530745	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15.3	0.471								2	1		2	1		62.205	52.207	3	0.059681	28578	160513_QHF_FH_JSI10Kac_6	37.583	27.526			0.87282	1.0346	32.323	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97603	1.1631	16.565	2	0	Median	0.72313	0.69026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32168000	17000000	15168000	0	0	0	25593000	13093000	12500000	6575000	3907000	2667900	0	0	0	42468	1815	39978	258598;258599;258600	346729	346729	1834		0	
QSSSSTTSQGGVK	1	Unmodified	1252.5895	0.58952309	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	2	3	2	5.1656	1.3889	2	0.00049384	1804	160513_QHF_FH_JSI11Kac_3	84.658	46.931			0.98389	1.0675	17.746	8	0	Median	0.94068	0.78381	NaN	1	0	Median	0.91024	1.0675	2.5049	2	0	Median	0.99362	0.97197	19.624	3	0	Median	1.1529	1.2278	8.98	2	0	Median	592300000	283600000	308700000	149410000	73973000	75435000	148040000	64044000	83996000	138790000	69918000	68875000	156060000	75661000	80398000	42469	1142	39979	258601;258602;258603;258604;258605;258606;258607;258608	346730;346731;346732;346733;346734;346735	346732			6	
QSSSTNYTNELK	1	Unmodified	1370.6314	0.6313879	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	24.446	22.29	2	0.00012029	19106	160511_QHF_FH_JSI11i_1	86.114	57.906			0.93138	0.95327	27.696	5	1	Median	0.93497	0.77794	NaN	1	0	Median	0.81827	0.96143	NaN	1	0	Median	0.96849	0.93149	52.535	2	1	Median	0.93138	0.95327	NaN	1	0	Median	253960000	127700000	126260000	45229000	28378000	16852000	58317000	36219000	22098000	69096000	26719000	42377000	81317000	36387000	44931000	42470	5293	39980	258609;258610;258611;258612;258613	346736;346737;346738;346739;346740;346741;346742;346743;346744	346736			9	
QSSTPGSLFLSPPAPAPK	1	Unmodified	1780.9359	0.93594977	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	4									1	1		2	69.962	69.48	2;3	8.7345E-05	63294	160511_QHF_FH_JSI12i_1	62.475	57.76			0.89799	0.96331	10.276	3	0	Median	NaN	NaN	NaN	0	0	Median	0.77243	0.87706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96137	1.0185	7.8815	2	0	Median	95154000	44298000	50856000	0	0	0	31543000	16606000	14938000	0	0	0	63611000	27692000	35919000	42471	4714	39981	258614;258615;258616;258617	346745;346746;346747	346745			3	
QSSTQFSFVYLAHPR	0	Unmodified	1766.874	0.87401821	3721	Q8TDJ6	DMXL2	DmX-like protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	74.399	65.001	3	0.0098737	34038	160513_QHF_FH_JSI12Kac_6	42.568	38.177			1.1136	1.1399	6.6813	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2302	1.1951	NaN	1	0	Median	1.0081	1.0873	NaN	1	0	Median	46678000	25393000	21284000	0	0	0	0	0	0	21597000	11382000	10215000	25081000	14011000	11070000	42472	3721	39982	258618;258619	346748;346749	346749			0	
QSSVTQVTEQSPK	1	Unmodified	1417.7049	0.7048872	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	20.661	19.948	2	2.6716E-12	17146	160511_QHF_FH_JSI11i_1	120.53	98.536			1.1644	1.07	15.752	5	5	Median	1.2661	1.0744	12.098	2	2	Median	0.93831	1.07	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1593	1.2399	24.396	2	2	Median	156760000	71983000	84777000	62451000	26195000	36255000	21527000	12196000	9330500	0	0	0	72783000	33592000	39191000	42473	2584	39983	258620;258621;258622;258623;258624;258625	346750;346751;346752;346753;346754;346755	346750			6	
QSSYSQQPYNNQGQQQNMESSGSQGGR	0	Unmodified	2974.2496	0.24960213	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	23.178	22.846	3	1.6255E-14	20145	160511_QHF_FH_JSI12i_1	94.594	92.12			1.2188	1.246	62.619	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82364	0.80024	NaN	1	1	Median	1.8037	1.9401	NaN	1	0	Median	54413000	29734000	24679000	0	0	0	0	0	0	17844000	11545000	6299200	36569000	18190000	18379000	42474	3889	39984	258626;258627;258628	346756;346757;346758;346759;346760	346759			5	
QSTDEEVTSLAK	1	Unmodified	1306.6252	0.62523989	1220	P23193	TCEA1	Transcription elongation factor A protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.638	31.036	2	2.3549E-16	27605	160511_QHF_FH_JSI10i_1	166.29	144.33			0.8118	0.79809	32.347	4	2	Median	0.93676	0.76396	NaN	1	0	Median	0.7035	0.83374	NaN	1	0	Median	0.63349	0.62462	NaN	1	1	Median	1.2547	1.3402	NaN	1	1	Median	1682900000	923860000	759020000	382220000	195280000	186940000	481190000	296610000	184580000	403070000	236860000	166210000	416400000	195120000	221280000	42475	1220	39985	258629;258630;258631;258632	346761;346762;346763;346764;346765;346766	346763			6	
QSTDPFATSSTDPFSAANNSSITSVETLK	1	Unmodified	3002.3993	0.39926929	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		89.946	89.587	3	0.012291	81628	160511_QHF_FH_JSI11i_1	29.14	22.913			1.1058	1.0755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1058	1.0755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14774000	4523000	10251000	0	0	0	0	0	0	14774000	4523000	10251000	0	0	0	42476	1537	39986	258633	346767	346767			1	
QSTIVCHNR	0	Unmodified	1113.5349	0.53492552	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			6.1793	5.683	2	0.036438	3752	160511_QHF_FH_JSI10i_3	38.776	28.865			0.98366	1.1418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98366	1.1418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12442000	5297000	7144800	0	0	0	12442000	5297000	7144800	0	0	0	0	0	0	42477	2734	39987	258634	346768	346768			1	
QSTLYSFFPK	1	Unmodified	1216.6128	0.61282471	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.194	72.302	2	0.0016134	64406	160511_QHF_FH_JSI10i_2	64.82	49.191			0.99118	1.0346	5.466	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77565	0.95211	NaN	1	0	Median	0.99118	1.0346	NaN	1	0	Median	0.9668	1.0555	NaN	1	0	Median	185250000	104740000	80509000	0	0	0	45624000	26050000	19573000	78460000	44857000	33603000	61164000	33832000	27333000	42478	1778	39988	258635;258636;258637;258638	346769;346770;346771;346772	346772			3	
QSTQVMAASMSAFDPLK	1	Unmodified	1810.8594	0.8593557	3876	Q92734	TFG	Protein TFG	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.496	9	7								4	3	4	5	83.486	82.893	2;3	2.4924E-52	75148	160511_QHF_FH_JSI10i_1	220.85	194.94			0.88546	0.94281	8.8101	16	3	Median	1.1229	0.95295	9.34	4	1	Median	0.83304	0.97575	9.9879	3	0	Median	0.88546	0.89444	4.6436	4	0	Median	0.85984	0.9195	10.455	5	2	Median	1187800000	631400000	556390000	221880000	110770000	111110000	296980000	170910000	126080000	288610000	158720000	129890000	380320000	191000000	189320000	42479	3876	39989	258639;258640;258641;258642;258643;258644;258645;258646;258647;258648;258649;258650;258651;258652;258653;258654	346773;346774;346775;346776;346777;346778;346779;346780;346781;346782;346783;346784;346785;346786;346787;346788;346789;346790;346791;346792;346793;346794;346795;346796;346797;346798;346799;346800;346801;346802;346803;346804;346805;346806;346807;346808	346792			35	
QSTSFLVLQEILESEEK	1	Unmodified	1979.0099	0.0099025694	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.88		3	1						4	1	2	3	2	98.114	93.833	2;3	0	89388	160511_QHF_FH_JSI9i_2	401.72	364.87			0.85163	0.8524	21.405	8	0	Median	0.86054	0.75758	NaN	1	0	Median	0.67409	0.80966	5.9791	2	0	Median	1.1938	1.1663	26.652	3	0	Plateau	0.94441	1.0009	21.414	2	0	Median	1028600000	527900000	500680000	127380000	64854000	62523000	295920000	178400000	117520000	487700000	226450000	261260000	117580000	58200000	59380000	42480	98	39990	258655;258656;258657;258658;258659;258660;258661;258662	346809;346810;346811;346812;346813;346814	346810			5	
QSTSSQEASSASEPR	0	Unmodified	1550.6809	0.68085729	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	7.5661	7.2139	2	3.1551E-05	5154	160511_QHF_FH_JSI10i_1	82.069	64.595			0.92029	0.91237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92029	0.91237	NaN	1	1	Median	15630000	6134800	9495100	0	0	0	0	0	0	0	0	0	15630000	6134800	9495100	42481	478	39991	258663;258664	346815;346816	346816			2	
QSTTHLADGPFAVLVDYIR	0	Unmodified	2102.0797	0.07965389	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.43	101.44	3	4.9126E-10	90471	160511_QHF_FH_JSI11i_3	122.53	106.58			1.2901	1.2258	10.843	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4388	1.3235	NaN	1	0	Median	1.1568	1.1353	NaN	1	0	Median	277360000	117330000	160020000	0	0	0	0	0	0	150290000	59990000	90303000	127060000	57344000	69720000	42482	3290	39992	258665;258666	346817;346818	346817			2	
QSTVLAPVIDLK	1	Unmodified	1282.7497	0.74965254	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.949	73.448	2	5.4451E-05	66735	160511_QHF_FH_JSI11i_1	98.156	87.891			1.0042	0.91212	16.279	4	0	Median	0.96267	0.78891	NaN	1	0	Median	0.69597	0.80538	NaN	1	0	Median	1.0476	1.033	NaN	1	0	Median	1.0537	1.0769	NaN	1	0	Median	332530000	175320000	157210000	70217000	33633000	36584000	99848000	59137000	40711000	94186000	49941000	44244000	68275000	32606000	35669000	42483	4119	39993	258667;258668;258669;258670	346819;346820;346821;346822;346823	346819			5	
QSTWEKPDDLK	2	Unmodified	1345.6514	0.65139506	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		28.648	27.869	3	0.05078	24366	160511_QHF_FH_JSI10i_2	24.599	17.397			0.5634	0.98022	21.092	3	0	Plateau	1.1112	0.98022	NaN	1	0	Median	0.55643	0.69508	NaN	1	0	Median	1.0258	1.0201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98364000	46132000	52233000	27624000	8927100	18696000	40481000	21405000	19076000	30260000	15799000	14460000	0	0	0	42484	521	39994	258671;258672;258673	346824;346825	346825			2	
QSVDHFAK	1	Unmodified	930.45593	0.45593014	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	10.596	10.101	2;3	0.00028748	7541	160511_QHF_FH_JSI11i_2	92.439	76.237			1.0484	1.1044	12.269	8	0	Median	1.1781	1.002	10.481	2	0	Median	1.0253	1.251	6.0198	2	0	Median	0.95665	0.9691	3.5529	2	0	Median	1.0484	1.1621	3.9168	2	0	Median	1700900000	786840000	914060000	313540000	146980000	166560000	361950000	175320000	186620000	669940000	297750000	372190000	355480000	166790000	188690000	42485	5722	39995	258674;258675;258676;258677;258678;258679;258680;258681	346826;346827;346828;346829;346830;346831;346832;346833;346834;346835;346836	346832			11	
QSVDHFAKYFTDAGLK	2	Acetyl (K)	1867.9105	0.9104633	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.149	68.831	3	0.00024036	37632	160513_QHF_FH_JSI11Kac_6	136.35	113.54			0.14948	0.14089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14948	0.14089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63846000	55773000	8072900	0	0	0	0	0	0	63846000	55773000	8072900	0	0	0	42486	5722	39996	258682	346837	346837	3540		1	
QSVDNVTNPEK	1	Unmodified	1229.5888	0.58879481	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.566	16.108	2	0.011847	13789	160511_QHF_FH_JSI12i_1	55.401	40.14			1.1804	1.206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1804	1.206	NaN	1	1	Median	25787000	12779000	13009000	0	0	0	0	0	0	0	0	0	25787000	12779000	13009000	42487	5459	39997	258683	346838	346838			1	
QSVEDILK	1	Unmodified	930.50221	0.50221163	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10	5.71	2					2	3				3	3	1	52.193	44.784	2	0.0048997	40209	160511_QHF_FH_JSI11i_1	74.92	41.369			0.84905	0.92353	8.1823	7	2	Median	NaN	NaN	NaN	0	0	Median	0.79154	0.93449	6.3769	3	1	Median	0.93734	0.92353	10.154	3	1	Median	0.768	0.83261	NaN	1	0	Median	1593900000	850850000	743040000	0	0	0	814890000	446610000	368290000	774380000	401290000	373080000	4620400	2949500	1670900	42488	1460	39998	258684;258685;258686;258687;258688;258689;258690	346839;346840;346841;346842;346843;346844	346839			6	
QSVEDILKDHWQK	2	Acetyl (K)	1666.8315	0.83148469	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.478	67.154	3	0.00081872	36606	160513_QHF_FH_JSI11Kac_6	63.128	52.494			0.45829	0.42026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45829	0.42026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56212000	39808000	16404000	0	0	0	0	0	0	56212000	39808000	16404000	0	0	0	42489	1460	39999	258691	346845	346845	1445		1	
QSVEHFTK	1	Unmodified	974.48214	0.48214489	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							3	2	2	4	10.735	10.328	2;3	0.0012402	8169	160511_QHF_FH_JSI9i_2	66.19	45.67			1.0689	1.0226	16.037	11	2	Median	1.0761	0.92013	13.659	3	1	Median	0.7528	0.91688	2.3911	2	0	Median	1.0488	1.0638	6.2388	2	0	Median	1.1181	1.2479	13.765	4	1	Median	4081200000	2064400000	2016900000	731750000	383230000	348530000	968280000	543960000	424320000	1219000000	583140000	635870000	1162200000	554020000	608180000	42490	3218	40000	258692;258693;258694;258695;258696;258697;258698;258699;258700;258701;258702	346846;346847;346848;346849;346850;346851;346852;346853;346854	346849			9	
QSVEHFTKYFTEAGLK	2	Acetyl (K)	1925.9523	0.95232811	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.2	67.882	3	3.5252E-05	37067	160513_QHF_FH_JSI11Kac_6	93.753	80.023			0.36543	0.3433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36543	0.3433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144280000	106060000	38226000	0	0	0	0	0	0	144280000	106060000	38226000	0	0	0	42491	3218	40001	258703	346855	346855	2803		1	
QSVELCK	1	Unmodified	862.42185	0.42185282	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.956	15.685	2	0.0028874	13125	160511_QHF_FH_JSI11i_1	108.09	71.692			0.97193	1.038	81.453	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.248	1.4552	NaN	1	0	Median	0.79417	0.77861	NaN	1	0	Median	3.7104	3.9164	NaN	1	1	Median	708390000	292100000	416290000	0	0	0	244790000	120860000	123930000	247730000	123740000	123990000	215880000	47508000	168370000	42492	2155	40002	258704;258705;258706;258707	346856;346857;346858;346859;346860	346857			5	
QSVENDIHGLR	0	Unmodified	1266.6317	0.63166267	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	26.397	25.503	2;3	7.6768E-05	22125	160511_QHF_FH_JSI10i_2	95.523	65.356			0.9537	0.99062	16.589	4	0	Median	1.1399	0.9742	NaN	1	0	Median	0.81005	1.0073	NaN	1	0	Median	0.8133	0.81578	NaN	1	0	Median	1.1183	1.2228	NaN	1	0	Median	868560000	430090000	438470000	153320000	70508000	82812000	176010000	106920000	69097000	351730000	162130000	189600000	187500000	90539000	96956000	42493	842	40003	258708;258709;258710;258711;258712	346861;346862;346863	346863			3	
QSVENDIHGLRK	1	Unmodified	1394.7266	0.72662569	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.63		14	14						8	10	13	8	5	22.736	20.166	2;3;4	6.6504E-78	16763	160511_QHF_FH_JSI11i_3	240.85	177.77			0.94975	0.89874	44.221	34	5	Median	1.1199	0.96242	42.055	10	3	Median	0.9718	1.1869	56.633	12	2	Median	0.8747	0.82719	39.051	7	0	Median	0.80544	0.81423	21.051	5	0	Plateau	12953000000	6238300000	6715100000	1972400000	834410000	1137900000	4138400000	2061100000	2077200000	4486700000	2169200000	2317600000	2356000000	1173600000	1182300000	42494	842	40004	258713;258714;258715;258716;258717;258718;258719;258720;258721;258722;258723;258724;258725;258726;258727;258728;258729;258730;258731;258732;258733;258734;258735;258736;258737;258738;258739;258740;258741;258742;258743;258744;258745;258746;258747;258748	346864;346865;346866;346867;346868;346869;346870;346871;346872;346873;346874;346875;346876;346877;346878;346879;346880;346881;346882;346883;346884;346885;346886;346887;346888;346889;346890;346891;346892;346893;346894;346895;346896;346897;346898;346899;346900;346901;346902;346903;346904;346905;346906;346907;346908;346909;346910;346911;346912;346913;346914;346915;346916;346917;346918;346919	346870			54	
QSVFAILR	0	Unmodified	932.54435	0.54435122	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			65.866	64.368	2	0.023205	53971	160511_QHF_FH_JSI10i_3	43.246	18.324			0.97417	1.1294	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97417	1.1294	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12817000	5927600	6889500	0	0	0	12817000	5927600	6889500	0	0	0	0	0	0	42495	557	40005	258749	346920	346920			1	
QSVFPFESGK	1	Unmodified	1124.5502	0.55022446	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	55.392	54.53	2	2.5634E-09	49554	160511_QHF_FH_JSI12i_1	128.27	88.001			0.86358	0.92802	11.43	4	1	Median	NaN	NaN	NaN	0	0	Median	0.92121	1.1191	NaN	1	1	Median	0.87372	0.8956	NaN	1	0	Median	0.83635	0.91185	7.5162	2	0	Median	1200100000	643670000	556390000	0	0	0	199770000	114710000	85066000	529470000	274340000	255130000	470830000	254630000	216200000	42496	1130	40006	258750;258751;258752;258753	346921;346922;346923;346924;346925;346926	346923			6	
QSVFPFESGKPFK	2	Unmodified	1496.7664	0.76636524	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	3.3		7	8						1	4	4	4	4	63.778	62.358	2;3	1.6005E-14	53636	160511_QHF_FH_JSI12i_3	161.19	154.06			0.96163	0.90762	20.699	15	2	Median	0.99343	0.80785	6.441	4	1	Median	0.79459	0.91424	4.221	3	0	Plateau	0.97853	0.96433	32.05	4	1	Median	0.99236	1.0671	17.442	4	0	Median	8477500000	3897700000	4579800000	669990000	332600000	337390000	1235600000	672410000	563200000	2952500000	1219800000	1732800000	3619400000	1673000000	1946400000	42497	1130	40007	258754;258755;258756;258757;258758;258759;258760;258761;258762;258763;258764;258765;258766;258767;258768;258769	346927;346928;346929;346930;346931;346932;346933;346934;346935;346936;346937;346938;346939;346940;346941;346942;346943;346944;346945;346946;346947;346948;346949;346950;346951;346952;346953;346954;346955;346956;346957	346956			31	
QSVFPFESGKPFK	2	Acetyl (K)	1538.7769	0.77692993	1130	P17931	LGALS3	Galectin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								3			1	2		82.819	72.331	2;3	0.0036159	38217	160513_QHF_FH_JSI11Kac_5	67.776	34.368			0.36732	0.36556	63.299	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0259	1.1972	NaN	1	0	Median	0.40837	0.4061	14.873	2	0	Median	NaN	NaN	NaN	0	0	Median	27990000	19564000	8426900	0	0	0	2642700	1245100	1397600	25348000	18318000	7029300	0	0	0	42498	1130	40007	258770;258771;258772	346958;346959;346960;346961;346962	346959	980		5	
QSVGNKSMSFPTGK	2	Acetyl (K)	1508.7293	0.72932781	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				3	1	2	56.347	46.319	2	0.0038173	25819	160513_QHF_FH_JSI12Kac_4	63.727	48.155			0.89206	0.85823	19.244	5	0	Median	NaN	NaN	NaN	0	0	Median	0.62048	0.7318	11.523	2	0	Median	0.89206	0.85823	NaN	1	0	Median	0.96953	1.0539	3.7657	2	0	Median	18123000	9092000	9030500	0	0	0	7956900	4011200	3945700	2737300	1414500	1322800	7428300	3666300	3762000	42499	2175	40008	258773;258774;258775;258776;258777;258778	346963;346964;346965;346966;346967	346965	2295		5	
QSVLEGLSFSR	0	Unmodified	1221.6354	0.63535107	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		65.993	65.225	2	0.00030329	57452	160511_QHF_FH_JSI9i_2	76.302	49.165			0.95021	1.0003	17.413	3	0	Plateau	1.4961	1.3518	NaN	1	0	Median	0.96348	1.1674	NaN	1	0	Median	0.95021	0.95554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	186950000	92765000	94188000	47037000	19665000	27372000	65397000	35277000	30120000	74519000	37822000	36697000	0	0	0	42500	5147	40009	258779;258780;258781	346968;346969	346968			2	
QSVLHVLGILK	1	Unmodified	1205.7496	0.74959297	5212	Q9P2E3	ZNFX1	NFX1-type zinc finger-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		75.499	72.374	3	9.3429E-08	38701	160513_QHF_FH_JSI10Kac_6	108.56	82.521			0.89835	0.95384	8.3996	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84902	1.0122	NaN	1	0	Median	0.95054	0.89883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77952000	41972000	35980000	0	0	0	66252000	34484000	31767000	11701000	7487500	4213000	0	0	0	42501	5212	40010	258782;258783	346970;346971;346972	346971			3	
QSVQIPVFVMIRPR	0	Unmodified	1668.9498	0.94976611	4993	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			82.975	77.382	3	0.0087084	42920	160513_QHF_FH_JSI10Kac_6	45.654	31.863			0.95842	1.1191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95842	1.1191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50053000	21611000	28443000	0	0	0	50053000	21611000	28443000	0	0	0	0	0	0	42502	4993	40011	258784	346973	346973			1	
QSVTYACNK	1	Unmodified	1069.4862	0.48624399	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	5.96	4	1	1			3	2			1	4	3	3	13.617	9.3297	2	5.8624E-06	8301	160511_QHF_FH_JSI11i_1	114.2	70.085			0.91541	0.98132	13.495	9	0	Median	1.2101	0.98132	NaN	1	0	Median	0.90441	1.0558	9.4189	2	0	Median	0.72127	0.69934	14.419	3	0	Plateau	0.98237	1.0196	4.9483	3	0	Plateau	1821300000	946500000	874770000	269070000	136690000	132380000	526200000	265710000	260490000	498420000	295710000	202710000	527570000	248380000	279190000	42503	893	40012	258785;258786;258787;258788;258789;258790;258791;258792;258793;258794;258795	346974;346975;346976;346977;346978;346979;346980;346981;346982;346983;346984;346985;346986;346987;346988;346989;346990;346991	346974			18	
QSVVVLMGSLAK	1	Unmodified	1230.7006	0.70059386	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.31		6	7					4	4	5	6	5	5	76.1	71.841	2	6.0143E-24	37905	160513_QHF_FH_JSI11Kac_6	164.9	124.18			0.98196	0.93902	67.051	20	11	Median	0.92631	0.80709	13.497	5	3	Median	0.82019	0.95995	16.472	6	4	Median	1.0409	0.99842	11.094	5	2	Median	2.199	2.2773	120.17	4	2	Median	2131800000	1091900000	1039900000	460870000	257190000	203670000	637540000	346880000	290660000	628320000	336380000	291950000	405070000	151400000	253670000	42504	3860	40013	258796;258797;258798;258799;258800;258801;258802;258803;258804;258805;258806;258807;258808;258809;258810;258811;258812;258813;258814;258815;258816	346992;346993;346994;346995;346996;346997;346998;346999;347000;347001;347002;347003;347004;347005;347006;347007;347008;347009;347010;347011;347012;347013;347014;347015;347016;347017;347018	346999			27	
QSVVVLMGSLAK	1	Oxidation (M)	1246.6955	0.69550848	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.831						1		6	3	1	3	4	2	61.739	51.165	2	1.4645E-12	25929	160513_QHF_FH_JSI10Kac_5	129.16	98.082			0.88714	1.0011	22.305	7	0	Median	1.1945	1.0011	NaN	1	0	Median	0.85476	1.0349	6.2629	3	0	Plateau	0.91381	0.89826	27.16	2	0	Median	1.427	1.5659	NaN	1	0	Median	33390000	18952000	14438000	6296600	3327900	2968700	15401000	9778800	5621800	9117700	4591800	4525900	2575300	1253600	1321800	42505	3860	40013	258817;258818;258819;258820;258821;258822;258823;258824;258825;258826	347019;347020;347021;347022;347023;347024;347025;347026;347027	347025		2313	8	
QSVYEEK	1	Unmodified	881.41306	0.41306227	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	10.434	7.2415	2	0.011085	6921	160511_QHF_FH_JSI12i_1	72.038	37.231			0.84093	0.93773	12.132	5	0	Median	1.2248	0.99869	NaN	1	0	Median	0.80068	0.93773	NaN	1	0	Median	0.94656	0.93421	16.326	2	0	Median	0.75741	0.78601	NaN	1	0	Median	1363500000	692740000	670720000	382580000	174420000	208160000	4714900	2559800	2155100	453940000	218300000	235640000	522230000	297470000	224760000	42506	2502	40014	258827;258828;258829;258830;258831	347028;347029;347030;347031	347029			4	
QSYYSIAK	1	Unmodified	958.476	0.47599688	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	29.038	25.951	2	0.0019639	16134	160513_QHF_FH_JSI11Kac_4	94.302	70.779			0.95019	0.93422	12.711	11	1	Median	1.0121	0.84339	10.369	2	0	Median	0.68412	0.83043	19.835	3	0	Plateau	0.96662	1.0288	8.5705	3	1	Plateau	0.95019	1.0009	10.971	3	0	Median	1483500000	754250000	729290000	268660000	110760000	157900000	407650000	229160000	178490000	486590000	242180000	244410000	320650000	172160000	148490000	42507	3343	40015	258832;258833;258834;258835;258836;258837;258838;258839;258840;258841;258842	347032;347033;347034;347035;347036;347037;347038;347039;347040;347041;347042;347043;347044;347045;347046	347039			15	
QSYYSLMHDVYGMLLNLEK	1	Unmodified	2303.0966	0.096625862	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	97.775	88.501	3	9.4377E-45	48512	160513_QHF_FH_JSI12Kac_6	179.36	166.06			1.3009	1.2351	7.0013	2	0	Median	1.4954	1.2977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1317	1.1754	NaN	1	0	Median	191060000	92407000	98654000	75363000	33238000	42126000	0	0	0	0	0	0	115700000	59169000	56529000	42508	2115	40016	258843;258844	347047;347048	347048			2	
QTADFLQEYVTNK	1	Unmodified	1555.7518	0.75183739	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	67.889	67.532	2	2.1584E-09	61543	160511_QHF_FH_JSI12i_1	107.39	79.905			0.43242	0.45435	20.615	2	2	Median	NaN	NaN	NaN	0	0	Median	0.44344	0.52565	NaN	1	1	Median	0.42168	0.39272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	103290000	67183000	36103000	0	0	0	53156000	35637000	17519000	50130000	31546000	18584000	0	0	0	42509	5415	40017	258845;258846;258847;258848;258849	347049;347050;347051;347052;347053	347051			5	
QTAEETGLTPLETSR	0	Unmodified	1631.8002	0.80024414	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	42.982	42.059	2	0.00019002	37383	160511_QHF_FH_JSI9i_1	89.629	66.394			0.36381	0.3338	48.004	2	1	Median	0.5928	0.46871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22328	0.23772	NaN	1	1	Median	48324000	34567000	13757000	26097000	17380000	8717100	0	0	0	0	0	0	22227000	17187000	5040300	42510	2343	40018	258850;258851	347054;347055	347055			2	
QTAISQPASGNTFSHHSMVSMLGK	1	Unmodified	2515.1948	0.19477678	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	7.27	6.18		1	9						5	5	6	3	1	57.527	53.866	3;4	3.9607E-42	45254	160511_QHF_FH_JSI10i_3	185.5	181.69			0.95982	0.96525	25.6	15	7	Median	1.3325	1.1404	13.749	5	3	Median	0.80754	0.9394	14.781	6	3	Median	0.84189	0.80426	41.526	3	1	Median	0.71562	0.72548	NaN	1	0	Median	2052400000	961160000	1091200000	885270000	340800000	544470000	678200000	358170000	320030000	386980000	203400000	183570000	101930000	58789000	43137000	42511	2505	40019	258852;258853;258854;258855;258856;258857;258858;258859;258860;258861;258862;258863;258864;258865;258866	347056;347057;347058;347059;347060;347061;347062;347063;347064;347065;347066;347067;347068;347069;347070;347071;347072;347073;347074;347075	347058			19	
QTAISQPASGNTFSHHSMVSMLGK	1	Oxidation (M)	2531.1897	0.1896914	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			5							1	4			45.394	43.827	3;4	0.0001129	36364	160511_QHF_FH_JSI10i_3	47.564	44.102			0.80497	0.91504	7.4298	4	1	Median	1.0845	0.90814	NaN	1	0	Median	0.71815	0.82261	9.0302	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172560000	98533000	74025000	34857000	16964000	17893000	137700000	81569000	56132000	0	0	0	0	0	0	42512	2505	40019	258867;258868;258869;258870;258871	347076;347077;347078;347079;347080	347076		1982;1983	4	
QTALASR	0	Unmodified	745.40825	0.40825167	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	6.6346	6.2595	2	0.014292	4217	160511_QHF_FH_JSI9i_2	66.457	28.323			0.9942	1.035	15.08	8	0	Median	1.4752	1.2358	24.065	2	0	Median	0.92869	1.1057	10.67	2	0	Median	0.94272	0.93251	7.1517	2	0	Median	1.0077	1.0758	6.4855	2	0	Median	1712800000	831910000	880890000	320250000	138680000	181570000	438600000	211660000	226940000	508390000	253240000	255150000	445560000	228330000	217230000	42513	40	40020	258872;258873;258874;258875;258876;258877;258878;258879	347081;347082;347083;347084;347085;347086;347087;347088	347084			8	
QTALVELLK	1	Unmodified	1013.6121	0.61209643	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	66.937	66.207	2	0.001861	58534	160511_QHF_FH_JSI10i_2	67.207	47.43		+	0.82408	0.86763	35.35	6	0	Median	1.2593	1.0614	NaN	1	0	Median	0.94846	1.1477	4.8442	2	0	Median	0.66516	0.64761	12.855	2	0	Median	0.45447	0.52321	NaN	1	0	Median	459160000	281140000	178030000	64760000	29144000	35616000	95186000	46383000	48803000	165920000	110020000	55906000	133290000	95591000	37701000	42514	50	40021	258880;258881;258882;258883;258884;258885	347089;347090;347091;347092;347093;347094;347095	347095			7	
QTAQGMDYLHAK	1	Unmodified	1361.6398	0.63978452	968;801	P10398;P04049	ARAF;RAF1	Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase	no	no	0	0	0	0			By MS/MS		2	0		1										1		27.977	27.608	2	0.0030343	23211	160511_QHF_FH_JSI11i_2	58.37	30.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42515	968;801	40022	258886	347096	347096			1	
QTAQLIVGHVGNK	1	Unmodified	1363.7572	0.75719754	5084	Q9NX05	FAM120C	Constitutive coactivator of PPAR-gamma-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		1	1	3	30.72	30.677	2;3	6.3733E-05	26535	160511_QHF_FH_JSI11i_3	75.911	71.478			0.86327	0.81712	3.8642	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86327	0.81712	NaN	1	0	Median	0.82629	0.8377	5.0732	2	2	Median	184320000	94759000	89558000	0	0	0	0	0	0	60666000	29593000	31073000	123650000	65165000	58486000	42516	5084	40023	258887;258888;258889;258890;258891	347097;347098;347099;347100;347101;347102;347103	347098			7	
QTAQQIVSHVQNK	1	Unmodified	1479.7794	0.77938954	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.15		2	4					1	2	2	1	4	2	26.952	23.644	2;3	1.2857E-05	19947	160511_QHF_FH_JSI11i_3	91.207	78.227			1.152	1.0606	30.027	9	1	Median	1.2308	1.0899	4.2553	2	0	Median	0.55996	0.69413	NaN	1	0	Median	1.2552	1.2108	28.366	4	1	Median	0.80314	0.81169	37.824	2	0	Median	567760000	312100000	255660000	59711000	28592000	31119000	69761000	47973000	21788000	229640000	111830000	117800000	208650000	123700000	84950000	42517	5147	40024	258892;258893;258894;258895;258896;258897;258898;258899;258900	347104;347105;347106;347107;347108;347109;347110;347111;347112;347113;347114	347106			10	
QTASVTLQAIAAQNAAVQAVNAHSNILK	1	Unmodified	2831.5254	0.52535369	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	91.216	90.851	3;4	1.2828E-36	79868	160511_QHF_FH_JSI9i_2	165.31	158.2			1.0254	1.0397	16.288	9	1	Median	0.89807	0.75208	NaN	1	0	Median	0.88033	1.0335	29.005	2	0	Median	1.1114	1.0416	11.71	3	1	Median	1.0566	1.0657	9.2667	3	0	Plateau	856580000	404500000	452080000	73699000	34262000	39437000	111860000	64053000	47807000	286490000	125050000	161440000	384530000	181140000	203400000	42518	2780	40025	258901;258902;258903;258904;258905;258906;258907;258908;258909	347115;347116;347117;347118;347119;347120;347121;347122;347123;347124;347125;347126;347127;347128;347129;347130	347123			16	
QTATQLLK	1	Unmodified	901.52328	0.52328142	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	5.76	4	4	2			4	3			4	5	4	4	27.709	23.861	2	0.00014834	19561	160511_QHF_FH_JSI11i_2	124.98	57.951			1.0946	1.0376	21.833	16	0	Median	1.2868	1.0153	2.814	3	0	Median	0.90834	1.0757	27.43	5	0	Median	1.0486	1.0483	5.0906	4	0	Linear	0.87604	0.94911	33.694	4	0	Median	8893100000	4554900000	4338200000	1849300000	726930000	1122400000	2277800000	1194500000	1083300000	2802400000	1655900000	1146500000	1963600000	977550000	986050000	42519	2007	40026	258910;258911;258912;258913;258914;258915;258916;258917;258918;258919;258920;258921;258922;258923;258924;258925;258926	347131;347132;347133;347134;347135;347136;347137;347138;347139;347140;347141;347142;347143;347144;347145;347146;347147;347148;347149;347150;347151;347152;347153;347154;347155;347156;347157;347158	347151			28	
QTATQLLKLAHK	2	Acetyl (K)	1392.8089	0.80889876	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.645							1	4	7	2	3	4	3	63.188	53.262	2;3	2.0127E-24	28794	160513_QHF_FH_JSI11Kac_6	172.92	160.35			0.53523	0.53774	147	10	2	Median	0.86725	0.73463	1.6048	2	0	Median	1.0885	1.2844	12.709	2	0	Median	0.32691	0.31717	71.16	4	1	Median	0.075871	0.079713	293.98	2	1	Median	634500000	393500000	241000000	49128000	29565000	19564000	155770000	80125000	75642000	308860000	196550000	112300000	120740000	87253000	33490000	42520	2007	40027	258927;258928;258929;258930;258931;258932;258933;258934;258935;258936;258937;258938	347159;347160;347161;347162;347163;347164;347165;347166;347167;347168;347169;347170;347171;347172;347173;347174;347175;347176	347163	2037;2038		18	
QTAVSVENFIAELLPDK	1	Unmodified	1872.9833	0.98329389	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	102.42	102.34	2	2.9976E-10	90240	160511_QHF_FH_JSI9i_2	148.72	127.42			1.0833	1.1079	27.618	3	1	Plateau	0.78855	0.66385	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0135	1.0661	5.4349	2	0	Median	202740000	103550000	99190000	61525000	37284000	24240000	0	0	0	0	0	0	141220000	66270000	74950000	42521	4171	40028	258939;258940;258941	347177;347178	347177			2	
QTDFEHR	0	Unmodified	931.41479	0.41479361	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.1086	6.6857	2	0.022546	4464	160511_QHF_FH_JSI12i_2	56.011	17.773			0.8973	0.94624	17.813	4	0	Median	1.142	0.96995	NaN	1	0	Median	1.0003	1.2158	NaN	1	0	Median	0.79272	0.7904	NaN	1	0	Median	0.80488	0.9231	NaN	1	0	Median	156480000	83555000	72924000	29711000	12298000	17413000	37316000	20200000	17117000	53852000	29801000	24051000	35600000	21256000	14344000	42522	2176	40029	258942;258943;258944;258945	347179;347180;347181	347179			3	
QTDLFVLR	0	Unmodified	990.54983	0.54983053	3693	Q8TB96	ITFG1	T-cell immunomodulatory protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	15	0								2				1	1	72.192	61.496	2	0.053838	32781	160513_QHF_FH_JSI11Kac_5	43.246	16.284			0.83573	0.87043	8.0557	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92367	0.92145	NaN	1	0	Median	0.75617	0.82224	NaN	1	0	Median	6371800	2958500	3413300	0	0	0	0	0	0	3909900	1862300	2047600	2461800	1096100	1365700	42523	3693	40030	258946;258947	347182	347182			1	
QTDPMIMLK	1	Unmodified	1075.5406	0.54058775	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		54.816	54.404	2	0.001212	49355	160511_QHF_FH_JSI11i_1	73.233	50.191			1.3162	1.2542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3162	1.2542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	107730000	43862000	63865000	0	0	0	0	0	0	107730000	43862000	63865000	0	0	0	42524	2801	40031	258948;258949	347183;347184	347184			2	
QTDVLQQLSIQMANAK	1	Unmodified	1786.9247	0.92473315	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				84.9	84.066	3	0.0030553	74807	160511_QHF_FH_JSI9i_1	50.653	33.372			1.8202	1.528	NaN	1	1	Median	1.8202	1.528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7759400	2458200	5301200	7759400	2458200	5301200	0	0	0	0	0	0	0	0	0	42525	2517	40032	258950	347185	347185			1	
QTDVTGEEELTK	1	Unmodified	1348.6358	0.63580458	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.143	27.429	2	0.0083797	24498	160511_QHF_FH_JSI12i_1	59.265	41.456			0.27946	0.24644	54.917	3	3	Plateau	0.27946	0.22308	NaN	1	1	Median	0.37326	0.43913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65079	0.66181	NaN	1	1	Median	94311000	66637000	27674000	40096000	31217000	8878200	28632000	20374000	8258100	0	0	0	25584000	15046000	10537000	42526	2557	40033	258951;258952;258953	347186;347187;347188	347186			3	
QTEDSLASER	0	Unmodified	1134.5153	0.51529551	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	12.013	11.389	2	0.0019941	9273	160511_QHF_FH_JSI12i_1	62.536	50.581			0.95217	0.87216	12.782	2	0	Median	0.99011	0.7968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91568	0.95466	NaN	1	0	Median	77182000	40724000	36458000	41747000	24212000	17536000	0	0	0	0	0	0	35435000	16513000	18922000	42527	3328	40034	258954;258955	347189;347190	347189			2	
QTEDSLASERDR	0	Unmodified	1405.6433	0.64334957	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	9.8479	9.4038	2;3	0.00074535	7004	160511_QHF_FH_JSI11i_2	93.111	64.712			0.95914	0.94019	6.4591	5	2	Median	1.0926	0.94019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95941	0.95975	1.2359	2	1	Median	0.77636	0.8498	2.0837	2	1	Median	307850000	162370000	145480000	38643000	18601000	20041000	0	0	0	158120000	81176000	76939000	111090000	62588000	48503000	42528	3328	40035	258956;258957;258958;258959;258960	347191;347192;347193;347194;347195	347194			5	
QTEEQVNDLK	1	Unmodified	1202.5779	0.57789577	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	19.491	16.805	2	2.2139E-11	14145	160511_QHF_FH_JSI11i_1	169.37	145.95			1.1019	1.0524	14.177	6	1	Median	1.137	0.92582	NaN	1	0	Median	0.74483	0.87001	NaN	1	0	Median	1.1021	1.0529	14.747	2	0	Median	1.1019	1.1821	1.7462	2	1	Median	1003000000	553920000	449030000	282080000	129760000	152320000	238570000	143600000	94969000	210710000	120470000	90238000	271600000	160090000	111510000	42529	1016	40036	258961;258962;258963;258964;258965;258966	347196;347197;347198;347199;347200;347201;347202	347196			7	
QTELFAHFIQPAAQK	1	Unmodified	1727.8995	0.89950468	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.63		7	6						2	2	4	6	3	67.644	65.78	2;3	1.378E-16	57508	160511_QHF_FH_JSI11i_2	122.33	102.12			0.96709	1.0026	37.773	11	1	Median	0.67395	0.5749	NaN	1	0	Median	0.49415	0.60739	44.779	3	0	Plateau	0.97369	0.93588	36.76	4	1	Median	1.1933	1.1769	39.505	3	0	Median	1124200000	575380000	548780000	130510000	88407000	42102000	189430000	118690000	70743000	454520000	221420000	233100000	349700000	146870000	202840000	42530	403	40037	258967;258968;258969;258970;258971;258972;258973;258974;258975;258976;258977;258978;258979;258980;258981	347203;347204;347205;347206;347207;347208;347209;347210;347211;347212;347213;347214;347215;347216	347210			11	
QTEQADLINELYQGK	1	Unmodified	1748.8581	0.85809337	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	71.146	70.558	2	8.5954E-07	64224	160511_QHF_FH_JSI12i_1	141.37	115.93			0.99813	0.85611	12.823	3	2	Median	1.0025	0.85611	NaN	1	0	Median	0.67547	0.80346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99813	1.0285	NaN	1	1	Median	117170000	57347000	59826000	37543000	18136000	19407000	44922000	25215000	19707000	0	0	0	34708000	13996000	20711000	42531	4152	40038	258982;258983;258984	347217;347218;347219;347220	347217			4	
QTESLESLLSK	1	Unmodified	1233.6452	0.64524705	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	66.499	64.649	2	9.9094E-06	56315	160511_QHF_FH_JSI11i_2	108.4	83.563			0.99369	1.0417	12.951	9	0	Median	0.94338	0.79243	3.4182	2	0	Median	0.81284	0.97984	8.8641	2	0	Median	1.0767	1.0747	3.6663	2	0	Median	0.99369	1.0417	2.2492	3	0	Median	1736900000	898390000	838510000	356360000	171630000	184730000	457060000	252650000	204410000	533160000	277130000	256030000	390310000	196970000	193340000	42532	2252	40039	258985;258986;258987;258988;258989;258990;258991;258992;258993	347221;347222;347223;347224;347225;347226;347227;347228;347229;347230;347231;347232;347233;347234;347235;347236;347237;347238;347239	347235			19	
QTESLVEK	1	Unmodified	932.48148	0.48147619	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		14.726	14.153	2	0.0055333	11479	160511_QHF_FH_JSI9i_1	62.582	31.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42533	2605	40040	258994;258995	347240;347241	347241			2	
QTESTSFLEK	1	Unmodified	1168.5612	0.56118307	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.75	5	1				2	1			1	4	3	1	34.498	30.984	2	1.4326E-07	27887	160511_QHF_FH_JSI12i_1	120.09	86.97			1.1512	1.1104	34.523	9	4	Median	0.90446	0.73826	NaN	1	0	Median	0.92456	1.0864	50.834	4	3	Median	1.1647	1.1544	2.5287	3	1	Median	0.90408	0.96313	NaN	1	0	Median	3387500000	1629800000	1757700000	686380000	263780000	422600000	1446100000	755760000	690360000	600570000	282490000	318080000	654470000	327790000	326670000	42534	1922	40041	258996;258997;258998;258999;259000;259001;259002;259003;259004	347242;347243;347244;347245;347246;347247;347248;347249;347250;347251;347252;347253;347254;347255;347256;347257	347248			15	
QTESTSFLEKK	2	Acetyl (K)	1338.6667	0.66671078	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	50.241	40.667	2	3.0281E-06	21695	160513_QHF_FH_JSI10Kac_3	112.13	112.13			0.84689	0.92617	29.534	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97589	1.1585	NaN	1	0	Median	0.59245	0.58024	NaN	1	0	Median	0.84689	0.92617	8.8254	2	0	Median	45809000	25453000	20355000	0	0	0	13585000	7708700	5876200	11704000	7620000	4083800	20520000	10125000	10396000	42535	1922	40042	259005;259006;259007;259008	347258;347259;347260	347260	1926		3	
QTETEMLYGSAPR	0	Unmodified	1481.682	0.68204326	351	O43663	PRC1	Protein regulator of cytokinesis 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.488	40.043	2	5.5872E-05	36031	160511_QHF_FH_JSI11i_1	109.15	93.879			0.91593	1.031	22.192	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91593	1.031	NaN	1	0	Median	1.2779	1.2562	NaN	1	0	Median	0.78071	0.80663	NaN	1	0	Median	125650000	64610000	61040000	0	0	0	34140000	18201000	15939000	44831000	20431000	24400000	46679000	25979000	20701000	42536	351	40043	259009;259010;259011	347261;347262;347263	347261			2	
QTEVLLQPNPNAR	0	Unmodified	1478.7841	0.78414057	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	40.95	40.376	2	1.1119E-10	35831	160511_QHF_FH_JSI9i_1	152.04	128.05			0.93795	1.0686	12.144	5	3	Median	1.4409	1.1931	NaN	1	0	Median	0.89844	1.0686	NaN	1	0	Median	1.0062	0.97548	16.561	2	2	Median	0.93795	0.97702	NaN	1	1	Median	367970000	179570000	188400000	62921000	29729000	33192000	74952000	36135000	38816000	154940000	74849000	80094000	75152000	38853000	36299000	42537	5559	40044	259012;259013;259014;259015;259016	347264;347265;347266;347267;347268;347269;347270;347271	347271			8	
QTFEAAILTQLHPR	0	Unmodified	1623.8733	0.87328993	4895	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	4	1	76.667	76.234	3	7.8025E-07	68012	160511_QHF_FH_JSI11i_3	127.32	103.49			1.0205	0.96581	19.582	7	5	Median	1.0205	0.87805	NaN	1	1	Median	0.77568	0.96581	NaN	1	0	Median	1.3933	1.2985	14.49	4	3	Linear	0.70537	0.70097	NaN	1	1	Median	412500000	231050000	181450000	44259000	25325000	18933000	68124000	35434000	32690000	223060000	107090000	115960000	77061000	63198000	13863000	42538	4895	40045	259017;259018;259019;259020;259021;259022;259023	347272;347273;347274;347275;347276;347277;347278;347279	347273			7	
QTFENQVNR	0	Unmodified	1134.5418	0.54178503	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.215	14.771	2	0.01075	12467	160511_QHF_FH_JSI12i_1	58.981	46.934			0.90249	0.96658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90249	0.96658	NaN	1	1	Median	39696000	20180000	19516000	0	0	0	0	0	0	0	0	0	39696000	20180000	19516000	42539	1251	40046	259024	347280	347280			1	
QTFGYGAR	0	Unmodified	898.42972	0.42971539	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	20.011	19.216	2	0.007679	16599	160511_QHF_FH_JSI10i_2	58.782	50.441			0.95719	0.96155	5.3539	4	0	Median	1.0678	0.90953	NaN	1	0	Median	0.77249	0.94951	NaN	1	0	Median	1.0427	1.0339	NaN	1	0	Median	0.8787	0.97374	NaN	1	0	Median	788930000	400990000	387940000	171530000	75744000	95785000	205770000	115330000	90438000	207340000	98262000	109080000	204290000	111650000	92635000	42540	694	40047	259025;259026;259027;259028	347281;347282	347282			2	
QTFKSHFGR	1	Acetyl (K)	1148.5727	0.57269123	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		33.103	24.264	3	0.0021143	13760	160513_QHF_FH_JSI10Kac_6	60.518	45.368			0.56402	0.58838	70.112	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8367	0.96597	NaN	1	0	Median	0.38021	0.35838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24613000	15319000	9294600	0	0	0	14542000	7733700	6808600	10071000	7584900	2486000	0	0	0	42541	891	40048	259029;259030	347283;347284	347284	630		2	
QTFLLQTTK	1	Unmodified	1078.6023	0.60226003	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	55.889	45.231	2	0.0050323	24978	160513_QHF_FH_JSI11Kac_5	75.387	60.127			1.2492	0.91696	20.72	4	1	Linear	1.0678	0.90319	NaN	1	0	Median	0.76686	0.93095	NaN	1	0	Median	1.2444	1.2176	NaN	1	0	Median	0.65988	0.73502	NaN	1	1	Median	32911000	15734000	17178000	7905300	3479500	4425800	6580300	3179900	3400400	13356000	6096700	7259600	5069300	2977400	2092000	42542	606	40049	259031;259032;259033;259034	347285;347286;347287;347288	347286			4	
QTFNKEIK	2	Acetyl (K)	1048.5553	0.55530983	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		39.588	29.815	2	0.012677	18123	160513_QHF_FH_JSI11Kac_4	70.908	28.039			0.54132	0.52902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54132	0.52902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4545000	2897000	1648100	0	0	0	0	0	0	4545000	2897000	1648100	0	0	0	42543	3583	40050	259035	347289	347289	2888		1	
QTFPSEVVGK	1	Unmodified	1090.5659	0.56587452	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.859	37.643	2	0.0047932	33294	160511_QHF_FH_JSI9i_1	57.032	42.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42544	2977	40051	259036	347290	347290			1	
QTFSPFGQIMEIR	0	Unmodified	1552.7708	0.77079869	2163;1375	P31483;Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	91.362	90.935	2	2.2475E-11	79915	160511_QHF_FH_JSI11i_2	173.72	157.58			1.0628	1.0292	16.998	5	0	Median	1.163	1.0176	NaN	1	0	Median	0.78584	0.96402	NaN	1	0	Median	1.3244	1.2596	22.574	2	0	Median	0.92042	1.0292	NaN	1	0	Median	627090000	328790000	298300000	98761000	43691000	55070000	162610000	97022000	65588000	219180000	109070000	110110000	146540000	79010000	67527000	42545	1375;2163	40052	259037;259038;259039;259040;259041	347291;347292;347293;347294;347295;347296;347297;347298;347299;347300;347301	347299			11	
QTFTHNPLLQPGK	1	Unmodified	1479.7834	0.78341229	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	7						3	4	4	3	3	43.617	40.642	2;3	4.3127E-22	34390	160511_QHF_FH_JSI12i_3	174.42	152.68			0.98891	0.96473	20.044	11	1	Median	1.4693	1.245	21.475	3	0	Plateau	0.68072	0.80821	39.166	2	1	Median	0.98888	0.93472	3.4291	3	0	Plateau	1.1695	1.1842	16.332	3	0	Plateau	1666600000	813440000	853190000	146920000	76901000	70024000	98315000	54411000	43904000	611410000	291480000	319930000	809980000	390650000	419330000	42546	2625	40053	259042;259043;259044;259045;259046;259047;259048;259049;259050;259051;259052;259053;259054;259055	347302;347303;347304;347305;347306;347307;347308;347309;347310;347311;347312;347313;347314;347315;347316;347317;347318;347319	347316			17	
QTFYVTLR	0	Unmodified	1026.5498	0.54983053	3981	Q96B77	TMEM186	Transmembrane protein 186	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	16.872	16.191	3	0.050412	13533	160511_QHF_FH_JSI9i_2	15.151	7.8717			1.2103	1.0822	13.398	3	0	Median	1.2711	1.0822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2103	1.1771	NaN	1	0	Median	0.81514	0.90545	NaN	1	0	Median	318140000	155180000	162960000	81065000	39963000	41103000	0	0	0	148040000	63081000	84964000	89033000	52137000	36896000	42547	3981	40054	259056;259057;259058	347320	347320			1	
QTGEGVGPQEYTLLK	1	Unmodified	1618.8203	0.82025131	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.726	56.071	2	5.1013E-30	51000	160511_QHF_FH_JSI12i_1	192.65	174.59			1.0096	1.0666	4.9519	4	0	Median	1.3576	1.1188	NaN	1	0	Median	0.91931	1.0687	NaN	1	0	Median	1.0022	0.99232	NaN	1	0	Median	1.0171	1.0646	NaN	1	0	Median	648770000	329060000	319700000	140110000	57429000	82685000	162370000	89144000	73230000	199340000	103370000	95971000	146940000	79119000	67819000	42548	5215	40055	259059;259060;259061;259062	347321;347322;347323;347324;347325	347322			5	
QTGIETPNK	1	Unmodified	986.50327	0.50327426	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	15.859	12.702	2	0.00023031	10652	160511_QHF_FH_JSI11i_1	84.615	61.992			0.82272	0.89864	25.137	5	1	Median	1.228	1.0024	NaN	1	0	Median	0.60591	0.70683	NaN	1	1	Median	0.71397	0.6951	36.322	2	0	Median	0.82272	0.90672	NaN	1	0	Median	331700000	194340000	137370000	126480000	62270000	64215000	87480000	52376000	35104000	115560000	78651000	36910000	2178100	1040300	1137800	42549	1684	40056	259063;259064;259065;259066;259067;259068	347326;347327;347328;347329;347330;347331	347326			6	
QTGQWIGMVENFNQALK	1	Unmodified	1962.9622	0.96218129	2096	P78537	BLOC1S1	Biogenesis of lysosome-related organelles complex 1 subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.029	98.029	3	7.2916E-17	84824	160511_QHF_FH_JSI12i_3	117.4	99.7			1.5938	1.479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5938	1.479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15872000	6725600	9145900	0	0	0	0	0	0	15872000	6725600	9145900	0	0	0	42550	2096	40057	259069;259070	347332;347333	347333			2	
QTHTVDSLSR	0	Unmodified	1142.568	0.56799978	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.17	0.373		5	1							1	1	3	1	9.9443	9.6	2;3	0.00073346	7537	160511_QHF_FH_JSI10i_2	70.1	50.338			1.1739	1.1714	34.304	6	3	Median	1.1123	0.92935	NaN	1	1	Median	0.75968	0.92079	NaN	1	0	Median	1.2389	1.2705	34.98	3	2	Plateau	0.98781	1.1073	NaN	1	0	Median	216410000	97352000	119060000	25193000	11175000	14018000	42115000	23257000	18858000	119870000	48703000	71165000	29235000	14217000	15018000	42551	4259	40058	259071;259072;259073;259074;259075;259076	347334;347335;347336;347337;347338;347339;347340	347340			7	
QTIDNSQGAYQEAFDISK	1	Unmodified	2013.928	0.92796385	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	60.93	60.288	2;3	1.3368E-183	53673	160511_QHF_FH_JSI9i_1	373.42	342.69			0.8797	0.87524	8.936	8	0	Median	1.0422	0.86176	5.2709	2	0	Median	0.74898	0.89612	11.28	2	0	Median	0.87282	0.84652	1.6424	2	0	Median	0.94356	0.98982	10.397	2	0	Median	4189300000	2306800000	1882500000	952790000	479780000	473010000	1142100000	648290000	493830000	992260000	574400000	417860000	1102100000	604360000	497760000	42552	1288	40059	259077;259078;259079;259080;259081;259082;259083;259084	347341;347342;347343;347344;347345;347346;347347;347348;347349;347350;347351;347352;347353;347354;347355;347356;347357;347358;347359;347360;347361;347362	347360			22	
QTIDNSQGAYQEAFDISKK	2	Unmodified	2142.0229	0.022926872	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.63	0.809	11	4	4							6	4	6	3	54.864	54.096	2;3	2.7545E-41	49075	160511_QHF_FH_JSI11i_1	238.83	225.63			1.0923	1.1048	32.967	16	7	Median	1.0923	0.90692	11.002	4	2	Median	1.139	1.3089	39.506	4	1	Median	1.1571	1.1107	38.805	5	4	Median	1.0493	1.1203	13.211	3	0	Median	7790100000	3716000000	4074000000	1609600000	719280000	890300000	1535100000	740190000	794860000	2940900000	1392800000	1548100000	1704600000	863750000	840810000	42553	1288	40060	259085;259086;259087;259088;259089;259090;259091;259092;259093;259094;259095;259096;259097;259098;259099;259100;259101;259102;259103	347363;347364;347365;347366;347367;347368;347369;347370;347371;347372;347373;347374;347375;347376;347377;347378;347379;347380;347381;347382;347383;347384;347385;347386;347387;347388;347389;347390;347391;347392;347393;347394;347395;347396;347397	347368			35	
QTIQYIHPADAVK	1	Unmodified	1482.7831	0.78307794	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.3		7						1		2	1	3	2	41.595	39.27	2;3	8.609E-06	33635	160511_QHF_FH_JSI11i_2	131.37	97.408			0.94293	1.0056	31.662	7	2	Median	1.2323	1.065	NaN	1	1	Median	0.82594	1.0056	NaN	1	0	Median	0.9432	0.94255	51.298	3	1	Median	0.90968	1.0072	3.4079	2	0	Median	482000000	230580000	251430000	79312000	38722000	40591000	76121000	45398000	30723000	216880000	91950000	124930000	109690000	54508000	55182000	42554	4623	40061	259104;259105;259106;259107;259108;259109;259110;259111	347398;347399;347400;347401;347402;347403;347404;347405;347406;347407;347408;347409;347410;347411	347407			14	
QTISNACGTIGLIHAIANNK	1	Unmodified	2095.0844	0.084421692	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			73.724	72.285	3	0.00012419	60613	160511_QHF_FH_JSI10i_3	62.203	45.518			0.73641	0.84149	18.468	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73641	0.84149	18.468	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26386000	14628000	11758000	0	0	0	26386000	14628000	11758000	0	0	0	0	0	0	42555	1076	40062	259112;259113;259114	347412;347413;347414;347415	347412			4	
QTKGLYPAPLK	2	Acetyl (K)	1256.7129	0.71287311	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	60.61	50.145	2	0.0013497	28376	160513_QHF_FH_JSI11Kac_4	84.054	71.77			0.54832	0.65112	75.398	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.82414	0.97087	1.0524	2	0	Median	4.1632	4.1827	NaN	1	1	Median	0.79118	0.85448	NaN	1	0	Median	19577000	9903200	9673700	0	0	0	9488200	5453100	4035200	3577100	701050	2876100	6511500	3749100	2762500	42556	1507	40063	259115;259116;259117;259118	347416;347417;347418;347419;347420	347417	1534		5	
QTKPEFDQVLQGTAASTK	2	Unmodified	1947.9902	0.99017018	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	50.582	49.862	3	0.00020607	42574	160511_QHF_FH_JSI12i_3	58.073	48.114			1.3433	1.4055	10.68	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3604	1.4075	NaN	1	1	Median	1.2035	1.2818	13.029	2	0	Median	110690000	49926000	60762000	0	0	0	0	0	0	40044000	14281000	25762000	70644000	35644000	35000000	42557	5465	40064	259119;259120;259121	347421;347422;347423;347424	347424			3	
QTLAAFVPLLLK	1	Unmodified	1312.8119	0.81185887	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1	1	2	2	1	100.58	98.899	2	3.1993E-05	89396	160511_QHF_FH_JSI11i_2	172.88	159.93			0.90127	0.97884	14.873	6	6	Median	1.4631	1.1846	NaN	1	1	Median	0.79983	0.97184	11.304	2	2	Median	0.89102	0.85882	8.2102	2	2	Median	1.0211	1.1313	NaN	1	1	Median	1062300000	587090000	475200000	64885000	29780000	35105000	362410000	213500000	148910000	416960000	229020000	187940000	218040000	114800000	103250000	42558	2605	40065	259122;259123;259124;259125;259126;259127	347425;347426;347427;347428;347429;347430	347429			6	
QTLDALNYLHDNK	1	Unmodified	1543.7631	0.76307078	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		6								1	2	2	1	57.272	56.419	2;3	5.2223E-06	49834	160511_QHF_FH_JSI10i_2	87.216	60.101			1.128	1.197	6.5375	5	0	Median	1.3608	1.1623	NaN	1	0	Median	1.0866	1.3132	NaN	1	0	Median	1.1673	1.1567	7.2769	2	0	Median	1.0738	1.197	NaN	1	0	Median	462280000	225210000	237070000	76707000	36399000	40308000	116490000	52892000	63601000	171750000	87531000	84215000	97334000	48387000	48947000	42559	4673	40066	259128;259129;259130;259131;259132;259133	347431;347432;347433;347434	347434			4	
QTLDEPEVPEIFTK	1	Unmodified	1644.8247	0.82466798	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		77.913	77.75	2	0.00036558	70470	160511_QHF_FH_JSI10i_1	90.926	76.768			0.36544	0.4155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36544	0.4155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21027000	12638000	8388700	0	0	0	21027000	12638000	8388700	0	0	0	0	0	0	42560	3086	40067	259134;259135	347435;347436;347437	347436			3	
QTLEILK	1	Unmodified	843.50657	0.50656873	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	43.439	42.168	2	0.01788	36166	160511_QHF_FH_JSI12i_2	54.776	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42561	1961	40068	259136;259137;259138	347438;347439;347440	347439			3	
QTLEKVEK	2	Acetyl (K)	1015.555	0.55497548	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	29.208	21.138	2	0.01325	12875	160513_QHF_FH_JSI11Kac_3	70.1	6.0598			0.91027	0.5873	40.634	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91027	1.0772	NaN	1	0	Median	0.53514	0.52548	NaN	1	0	Median	0.94353	1.0465	NaN	1	0	Median	43146000	25281000	17864000	0	0	0	11398000	5864100	5533600	17578000	11212000	6366100	14171000	8205800	5964700	42562	1544	40069	259139;259140;259141	347441;347442;347443	347441	1558		3	
QTLENERGELANEVK	1	Unmodified	1728.8642	0.86424139	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.31	3	7	4				1	3		2	3	6	7	35.941	33.274	2;3	1.0161E-05	29315	160511_QHF_FH_JSI10i_2	123.4	113.12			0.97481	1.0012	8.3206	18	0	Median	1.1692	0.99749	3.7392	2	0	Median	0.88803	1.0922	10.868	3	0	Median	0.98713	0.98353	8.7757	6	0	Median	0.98591	1.0144	9.0383	7	0	Median	5274300000	2619200000	2655000000	930260000	403620000	526640000	983900000	473670000	510230000	1777300000	884300000	893040000	1582800000	857650000	725140000	42563	1436	40070	259142;259143;259144;259145;259146;259147;259148;259149;259150;259151;259152;259153;259154;259155;259156;259157;259158;259159	347444;347445;347446;347447;347448;347449;347450;347451;347452;347453;347454;347455;347456;347457;347458;347459;347460;347461;347462;347463;347464;347465;347466;347467;347468;347469;347470;347471;347472;347473;347474;347475;347476	347471			33	
QTLFASQVMR	0	Unmodified	1179.607	0.60702783	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	50.972	50.25	2	7.2324E-08	42920	160511_QHF_FH_JSI12i_3	123.75	104.97			1.0057	0.99045	12.979	6	3	Median	1.0058	0.86899	NaN	1	1	Median	0.90766	1.0709	7.1325	2	1	Median	0.9215	0.87686	13.316	2	1	Median	1.0575	1.0687	NaN	1	0	Median	432450000	201720000	230720000	77567000	34730000	42837000	109770000	51743000	58024000	159430000	77882000	81551000	85678000	37366000	48311000	42564	1690	40071	259160;259161;259162;259163;259164;259165	347477;347478;347479;347480;347481;347482;347483;347484	347483			8	
QTLGPGTEQQGSHLNPEQLR	0	Unmodified	2189.0825	0.082507436	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	1	4	42.343	41.625	3	2.6817E-05	35616	160511_QHF_FH_JSI12i_3	62.362	49.699			0.96924	0.99179	14.758	5	3	Median	1.1534	1.0041	NaN	1	1	Median	0.62631	0.76093	NaN	1	0	Median	1.1397	1.1364	NaN	1	1	Median	0.93483	0.95569	5.2437	2	1	Median	260150000	132580000	127560000	42330000	20348000	21982000	57873000	41263000	16610000	66313000	31991000	34322000	93629000	38982000	54647000	42565	2907	40072	259166;259167;259168;259169;259170;259171;259172	347485;347486;347487;347488;347489;347490;347491;347492	347491			8	
QTLGYHVYPTCR	0	Unmodified	1493.7085	0.70853279	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	33.754	33.138	2;3	0.0027609	27910	160511_QHF_FH_JSI12i_3	69.451	54.76			1.0067	1.0743	25.968	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89064	1.0743	19.25	2	1	Median	0.96944	0.9159	NaN	1	0	Median	1.5635	1.589	NaN	1	0	Median	185330000	88565000	96761000	0	0	0	44379000	24835000	19544000	65601000	32848000	32753000	75345000	30882000	44463000	42566	387	40073	259173;259174;259175;259176;259177	347493;347494;347495;347496;347497	347497			5	
QTLKMIR	1	Acetyl (K)	930.53207	0.53207197	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		45.359	35.159	2	0.033592	19946	160513_QHF_FH_JSI11Kac_5	68.081	33.978			0.55879	0.58976	121.6	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2265	1.3934	NaN	1	0	Median	0.25459	0.24961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12861000	9376800	3484600	0	0	0	2185200	913330	1271800	10676000	8463400	2212800	0	0	0	42567	2033	40074	259178;259179	347498	347498			1	
QTLLDMIAR	0	Unmodified	1059.5747	0.57466507	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		78.888	78.196	2	0.00077414	69066	160511_QHF_FH_JSI9i_2	74.376	57.136			0.94864	0.99804	4.6703	3	0	Median	1.0858	0.92707	NaN	1	0	Median	0.82097	0.99804	NaN	1	0	Median	0.94864	1.0108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	112930000	62474000	50461000	37570000	17823000	19747000	36820000	22233000	14588000	38544000	22418000	16127000	0	0	0	42568	2455	40075	259180;259181;259182	347499;347500;347501	347499			3	
QTLLFSATFRK	1	Unmodified	1310.7347	0.73467118	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	2	1			66.433	58.035	3	0.01288	31929	160513_QHF_FH_JSI10Kac_6	34.331	23.721			0.9447	0.95287	22.275	2	1	Median	0.94978	0.81401	NaN	1	1	Median	0.93965	1.1154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60504000	30485000	30018000	22475000	13123000	9351100	38029000	17362000	20667000	0	0	0	0	0	0	42569	3377	40076	259183;259184;259185	347502;347503;347504;347505	347505			4	
QTLLHYLVK	1	Unmodified	1113.6546	0.65462995	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	55.663	54.828	3	0.00029744	48284	160511_QHF_FH_JSI11i_3	71.451	61.079			1.1864	1.2134	4.9337	4	1	Median	1.4727	1.2325	NaN	1	1	Median	1.0589	1.2368	NaN	1	0	Median	1.2296	1.112	NaN	1	0	Median	1.1447	1.1946	NaN	1	0	Median	143780000	57044000	86735000	19008000	9421100	9587000	25136000	9603800	15532000	40329000	19824000	20505000	59307000	18195000	41111000	42570	697	40077	259186;259187;259188;259189;259190	347506;347507;347508;347509;347510;347511;347512;347513	347507			8	
QTLMWSATWPK	1	Unmodified	1347.6645	0.66454271	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.51		6	6					2	6	7	4	5	4	77.344	73.096	2;3	2.9331E-46	38409	160513_QHF_FH_JSI11Kac_6	212.28	200.91			0.96651	1.0139	25.585	17	1	Median	0.96651	0.82738	32.197	5	1	Median	0.78413	0.95098	6.9962	4	0	Median	1.2503	1.2414	14.715	5	0	Median	0.9466	1.0517	20.29	3	0	Plateau	4685200000	2233200000	2452000000	849910000	374040000	475870000	1201900000	662640000	539230000	1747900000	767650000	980290000	885520000	428920000	456600000	42571	1128;3893	40078	259191;259192;259193;259194;259195;259196;259197;259198;259199;259200;259201;259202;259203;259204;259205;259206;259207;259208;259209;259210	347514;347515;347516;347517;347518;347519;347520;347521;347522;347523;347524;347525;347526;347527;347528;347529;347530;347531;347532;347533;347534;347535;347536;347537;347538;347539;347540;347541;347542;347543;347544;347545;347546;347547;347548;347549;347550;347551;347552;347553;347554	347528			40	
QTLMWSATWPK	1	Oxidation (M)	1363.6595	0.65945733	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.72		7	1					3	4	5	4	4	2	72.035	66.218	2	3.3404E-11	34339	160513_QHF_FH_JSI12Kac_6	137.89	119.15			0.96868	1.0042	29.719	12	7	Median	1.0249	0.86513	21.751	4	3	Median	0.79827	0.94607	5.3549	3	1	Median	1.2439	1.2073	45.454	3	2	Median	1.0199	1.1093	5.0086	2	1	Median	616270000	315970000	300300000	141380000	63784000	77599000	146060000	83959000	62099000	179640000	88737000	90902000	149190000	79490000	69703000	42572	1128;3893	40078	259211;259212;259213;259214;259215;259216;259217;259218;259219;259220;259221;259222;259223;259224;259225	347555;347556;347557;347558;347559;347560;347561;347562;347563;347564;347565;347566;347567;347568;347569;347570;347571;347572;347573	347570		751	19	
QTLNAIK	1	Unmodified	786.45995	0.45995289	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	16.989	16.229	2	0.0080339	13934	160511_QHF_FH_JSI12i_1	85.212	14.078			0.84846	0.79263	11.169	2	0	Median	1.0281	0.85776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70024	0.73244	NaN	1	0	Median	448560000	229350000	219210000	210620000	100160000	110460000	0	0	0	0	0	0	237940000	129190000	108750000	42573	454	40079	259226;259227	347574;347575;347576	347575			3	
QTLPVIYVK	1	Unmodified	1059.6328	0.63283187	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	1	2	1	59.571	58.954	2	0.0089842	53752	160511_QHF_FH_JSI12i_1	51.63	44.991			1.1929	1.1436	16.41	5	0	Median	1.1929	0.96943	NaN	1	0	Median	0.88203	1.0054	NaN	1	0	Median	1.3303	1.2965	17.745	2	0	Median	1.1322	1.1784	NaN	1	0	Median	102660000	48825000	53835000	13625000	6697100	6927900	21455000	11128000	10327000	47740000	23120000	24620000	19839000	7880000	11960000	42574	1689	40080	259228;259229;259230;259231;259232	347577;347578	347577			1	
QTLQEDLLR	0	Unmodified	1114.5982	0.59823728	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.78	46.555	2	0.0038098	41360	160511_QHF_FH_JSI9i_1	69.338	55.759			0.52659	0.43871	NaN	1	1	Median	0.52659	0.43871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95466000	62655000	32812000	95466000	62655000	32812000	0	0	0	0	0	0	0	0	0	42575	1557	40081	259233	347579	347579			1	
QTLQSEQPLQVAR	0	Unmodified	1496.7947	0.79470526	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	3	3	2	44.229	39.137	2	1.7004E-155	35124	160511_QHF_FH_JSI11i_1	306.48	266.86			0.89825	0.93685	6.2444	8	2	Median	1.1332	0.92251	NaN	1	0	Median	0.79716	0.94071	5.3207	2	0	Median	0.95353	0.92012	9.2095	3	1	Median	0.89825	0.95479	0.26432	2	1	Median	1897200000	905690000	991470000	305440000	149740000	155700000	538200000	251850000	286350000	499200000	270070000	229140000	554310000	234020000	320280000	42576	1449	40082	259234;259235;259236;259237;259238;259239;259240;259241;259242	347580;347581;347582;347583;347584;347585;347586;347587;347588;347589;347590	347580			11	
QTLSIYQALK	1	Unmodified	1163.655	0.65502388	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	5.25	5.63		3						1		1		2	1	63.852	60.457	2	0.00027055	32700	160513_QHF_FH_JSI11Kac_5	91.087	52.065			1.0018	1.0394	53.431	4	0	Median	0.79555	0.68422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7262	1.7064	44.043	2	0	Median	0.78608	0.86449	NaN	1	0	Median	187990000	87943000	100050000	43985000	21487000	22498000	0	0	0	83842000	32986000	50855000	60165000	33470000	26695000	42577	2636	40083	259243;259244;259245;259246	347591;347592;347593	347593			3	
QTLSTPGTIILGTIPVPK	1	Unmodified	1835.0768	0.076800343	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.16	100.03	3	0.00018187	88401	160511_QHF_FH_JSI10i_2	70.335	60.278			1.0084	1.06	7.9213	4	4	Median	1.071	0.93789	NaN	1	1	Median	0.91789	1.1237	NaN	1	1	Median	0.99702	1.0317	NaN	1	1	Median	1.0199	1.089	NaN	1	1	Median	105510000	53539000	51968000	18527000	9868000	8659000	25013000	11786000	13227000	35291000	18290000	17001000	26676000	13594000	13081000	42578	4394	40084	259247;259248;259249;259250	347594;347595;347596;347597	347597			4	
QTLTESMLEPVPELK	1	Unmodified	1713.8859	0.88588803	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	80.115	79.775	2	3.9437E-21	72777	160511_QHF_FH_JSI12i_1	136.3	113.97			1.2953	1.2582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2953	1.2582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17907000	8267000	9639800	0	0	0	0	0	0	17907000	8267000	9639800	0	0	0	42579	647	40085	259251;259252	347598;347599	347599			2	
QTMEELK	1	Unmodified	877.42152	0.42151847	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	16.373	16.02	2	0.026501	13727	160511_QHF_FH_JSI12i_1	56.659	28.147			1.2959	1.4279	47.944	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7335	2.0042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96879	1.0173	NaN	1	1	Median	241830000	96007000	145830000	0	0	0	164090000	56547000	107540000	0	0	0	77742000	39460000	38282000	42580	225	40086	259253;259254	347600;347601	347600			2	
QTMGFEVPGVSSEENGHSFHTPQK	1	Unmodified	2629.1867	0.18671451	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.661	57.407	4	0.0011188	49421	160511_QHF_FH_JSI12i_3	41.763	33.866			0.96225	0.96147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96225	0.96147	NaN	1	1	Median	29793000	19831000	9962700	0	0	0	0	0	0	0	0	0	29793000	19831000	9962700	42581	5610	40087	259255	347602	347602			1	
QTMLFSATQTR	0	Unmodified	1282.634	0.63397086	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.69		3						1	4	2	2	3	1	48.766	43.227	2	2.8184E-13	37003	160511_QHF_FH_JSI12i_2	150.61	119.38			1.0471	0.99005	6.2808	4	1	Median	1.19	0.99006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0471	1.0462	7.808	2	1	Median	0.87372	0.95744	NaN	1	0	Median	131150000	68412000	62736000	3076600	1545500	1531000	0	0	0	65392000	33255000	32136000	62680000	33611000	29069000	42582	5042	40088	259256;259257;259258;259259;259260;259261;259262;259263	347603;347604;347605;347606;347607;347608;347609;347610;347611;347612	347604			10	
QTMQVDEHARPQTTLEQLQK	1	Unmodified	2380.1805	0.18050692	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	44.972	44.345	3;4	3.658E-68	39033	160511_QHF_FH_JSI11i_3	190.63	183.64			0.86208	0.88343	22.342	11	1	Median	1.096	0.93151	0.27469	2	0	Median	0.83434	1.0289	12.632	2	0	Median	0.8489	0.84689	5.1256	4	0	Median	0.80566	0.81366	43.819	3	1	Median	2280300000	1134600000	1145700000	462360000	201290000	261070000	444560000	274270000	170290000	1116700000	512670000	603980000	256710000	146380000	110330000	42583	1545	40089	259264;259265;259266;259267;259268;259269;259270;259271;259272;259273;259274	347613;347614;347615;347616;347617;347618;347619;347620;347621;347622;347623;347624;347625;347626;347627;347628;347629;347630;347631;347632;347633;347634;347635;347636;347637	347617			25	
QTMQVDEHARPQTTLEQLQK	1	Oxidation (M)	2396.1754	0.17542154	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	36.449	36.08	4	1.0306E-07	31519	160511_QHF_FH_JSI11i_3	105.67	93.008			0.95244	0.89939	26.459	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67515	0.83593	NaN	1	1	Median	0.95244	0.89939	NaN	1	1	Median	1.3112	1.3651	NaN	1	1	Median	144440000	74348000	70092000	0	0	0	30755000	18643000	12112000	76047000	37965000	38082000	37637000	17739000	19898000	42584	1545	40089	259275;259276;259277	347638;347639;347640	347638		1221	3	
QTNFMTK	1	Unmodified	868.41129	0.41128813	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	18.081	17.36	2	0.025918	14492	160511_QHF_FH_JSI9i_2	60.59	42.823			1.0658	1.0864	126.23	3	2	Median	4.5012	3.8551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0658	1.0864	NaN	1	0	Median	0.27694	0.30875	NaN	1	1	Median	407370000	203580000	203790000	88663000	20538000	68125000	0	0	0	220960000	106180000	114780000	97745000	76862000	20883000	42585	1823	40090	259278;259279;259280	347641;347642;347643;347644	347642			4	
QTNLENLDQAFSVAER	0	Unmodified	1833.8857	0.88570511	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								3	2	3	2	75.282	74.806	2;3	5.0017E-12	66554	160511_QHF_FH_JSI9i_1	140.82	118.29			0.97403	0.95119	11.984	8	5	Median	1.1991	1.0173	13.337	2	2	Median	0.69481	0.80865	4.7019	2	1	Median	1.0566	1.0204	8.6551	2	2	Median	0.9562	0.96473	3.2769	2	0	Median	258520000	131730000	126800000	48330000	17788000	30542000	64831000	39612000	25219000	102210000	52654000	49559000	43151000	21672000	21479000	42586	2636	40091	259281;259282;259283;259284;259285;259286;259287;259288;259289;259290	347645;347646;347647;347648;347649;347650;347651;347652;347653;347654;347655	347654			11	
QTNPSAMEVEEDDPVPEIR	0	Unmodified	2154.9739	0.97392777	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	64.651	63.982	2;3	7.6331E-237	57933	160511_QHF_FH_JSI10i_1	339.3	315.04			1.0075	0.98602	5.9166	8	2	Median	1.1608	0.9597	5.0425	3	2	Median	0.84979	1.0056	0.17272	2	0	Median	0.94726	0.91859	7.4034	2	0	Median	1.0146	1.0458	NaN	1	0	Median	753540000	393470000	360070000	223720000	100580000	123140000	171380000	96931000	74449000	286140000	158300000	127840000	72297000	37657000	34639000	42587	1846	40092	259291;259292;259293;259294;259295;259296;259297;259298;259299	347656;347657;347658;347659;347660;347661;347662;347663;347664;347665;347666;347667;347668;347669	347666			13	
QTNPSAMEVEEDDPVPEIRR	0	Unmodified	2311.075	0.075038797	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	55.683	55.071	3	1.4251E-33	48852	160511_QHF_FH_JSI11i_3	176.46	169.35			1.0514	1.0948	2.9394	9	0	Median	1.3262	1.1188	NaN	1	0	Median	0.91793	1.0982	0.43475	2	0	Median	1.0556	1.0692	0.87976	3	0	Plateau	1.0514	1.1637	3.9299	3	0	Plateau	2771200000	1363800000	1407400000	541000000	235750000	305260000	824830000	439990000	384840000	924620000	455800000	468820000	480750000	232250000	248500000	42588	1846	40093	259300;259301;259302;259303;259304;259305;259306;259307;259308	347670;347671;347672;347673;347674;347675;347676;347677;347678;347679;347680;347681;347682;347683;347684;347685;347686;347687;347688	347671			19	
QTPADGEASGESEPAK	1	Unmodified	1572.6904	0.69035934	1840	P55011	SLC12A2	Solute carrier family 12 member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	12.891	12.47	2	2.8699E-05	10143	160511_QHF_FH_JSI10i_1	84.289	68.718			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42589	1840	40094	259309;259310;259311;259312;259313	347689;347690;347691;347692;347693	347692			5	
QTPAGPETEEEPYR	0	Unmodified	1602.7162	0.71618016	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.891	27.304	2	8.6868E-05	23795	160511_QHF_FH_JSI9i_1	113.65	106.99			1.0341	1.0403	11.061	4	0	Median	1.2729	1.0678	NaN	1	0	Median	0.7196	0.84741	NaN	1	0	Median	1.038	1.0135	NaN	1	0	Median	1.0301	1.0723	NaN	1	0	Median	310100000	161870000	148230000	66535000	33280000	33255000	89392000	52033000	37359000	90513000	47919000	42594000	63657000	28633000	35024000	42590	2429	40095	259314;259315;259316;259317	347694;347695;347696;347697;347698;347699;347700;347701	347701			8	
QTPEYQNESSR	0	Unmodified	1337.5848	0.58477206	984	P11117	ACP2	Lysosomal acid phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	10.555	10.171	2	0.0014782	7787	160511_QHF_FH_JSI9i_1	63.32	54.407			1.1058	1.1068	9.3844	4	0	Median	1.4495	1.1575	NaN	1	0	Median	0.81664	0.96712	NaN	1	0	Median	1.2425	1.1895	NaN	1	0	Median	0.98419	1.0583	NaN	1	0	Median	176740000	86927000	89813000	40167000	19062000	21105000	45640000	25579000	20061000	47522000	24889000	22633000	43412000	17397000	26015000	42591	984	40096	259318;259319;259320;259321	347702;347703;347704;347705	347704			4	
QTPHSEIIFYK	1	Unmodified	1361.698	0.69795133	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		42.074	41.6	2;3	0.0077573	35926	160511_QHF_FH_JSI11i_2	51.445	33.581			1.817	1.8845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.817	1.8845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39952000	11749000	28203000	0	0	0	0	0	0	39952000	11749000	28203000	0	0	0	42592	5241	40097	259322;259323	347706;347707	347707			2	
QTPMASSPRPK	1	Unmodified	1198.6128	0.61284149	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			10.987	10.389	3	0.012189	8037	160511_QHF_FH_JSI10i_3	40.377	26.171			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42593	2927	40098	259324;259325	347708;347709	347708			2	
QTPSAGK	1	Unmodified	687.35515	0.35515346	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	4.692	4.4715	2	0.013602	2317	160511_QHF_FH_JSI12i_1	58.604	28.798			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42594	1576	40099	259326;259327	347710;347711	347711			2	
QTPSDFLK	1	Unmodified	934.476	0.47599688	2000	P62312	LSM6	U6 snRNA-associated Sm-like protein LSm6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		39.315	38.558	2	0.010742	34619	160511_QHF_FH_JSI11i_1	63.419	37.682			1.1202	0.99199	7.8253	2	2	Median	1.2848	1.0484	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97662	0.93859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	259250000	142840000	116400000	102370000	51776000	50589000	0	0	0	156880000	91067000	65814000	0	0	0	42595	2000	40100	259328;259329	347712;347713	347712			2	
QTPSFWILAR	0	Unmodified	1217.6557	0.65569258	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	1	2	1	2	82.972	76.512	2	0.0018477	39491	160513_QHF_FH_JSI12Kac_6	77.677	63.875			0.90809	0.96376	5.5494	6	3	Median	1.1011	0.94591	NaN	1	0	Median	0.83719	0.9871	0.73964	2	2	Median	0.9258	0.88077	NaN	1	0	Median	0.92541	0.97143	7.7156	2	1	Median	446700000	242500000	204200000	51739000	26461000	25278000	261740000	148510000	113230000	48084000	24499000	23584000	85138000	43031000	42107000	42596	2442	40101	259330;259331;259332;259333;259334;259335	347714;347715;347716;347717;347718	347715			5	
QTQAASASQGSASAAEVLLR	0	Unmodified	1944.9865	0.98648179	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	54.094	53.393	2;3	3.1449E-55	48569	160511_QHF_FH_JSI12i_1	224.59	200.3			1.1093	1.0675	7.4792	7	0	Median	1.2739	1.04	3.6214	2	0	Median	1.0327	1.2284	NaN	1	0	Median	1.1978	1.1332	8.3764	2	0	Median	1.0222	1.0487	2.5078	2	0	Median	367620000	171570000	196050000	92339000	42482000	49857000	60012000	28783000	31229000	102460000	46828000	55630000	112810000	53475000	59331000	42597	3951	40102	259336;259337;259338;259339;259340;259341;259342	347719;347720;347721;347722;347723;347724;347725;347726	347723			6	
QTQALADQFEDK	1	Unmodified	1392.6521	0.65212334	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	37.726	36.993	2	5.0866E-07	33576	160511_QHF_FH_JSI12i_1	127.17	98.216			0.88591	0.70491	33.205	5	4	Median	0.75493	0.59885	23.059	2	2	Median	0.59642	0.70302	NaN	1	1	Median	1.0124	0.98677	NaN	1	1	Median	1.1137	1.1954	NaN	1	0	Median	183700000	97487000	86212000	51157000	27343000	23814000	46349000	30234000	16115000	42341000	17256000	25084000	43853000	22654000	21198000	42598	3103	40103	259343;259344;259345;259346;259347;259348;259349	347727;347728;347729;347730;347731;347732;347733;347734	347730			8	
QTQIFTTYSDNQPGVLIQVYEGER	0	Unmodified	2785.3559	0.35588833	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	3.08	6	10	4						1	2	5	8	6	93.219	92.931	2;3	6.4965E-107	80570	160511_QHF_FH_JSI12i_3	264.38	246.27			1.0914	1.1652	18.671	17	3	Median	1.3634	1.169	0.45264	2	0	Median	0.80488	0.9507	26.027	4	0	Median	1.2051	1.1878	20.048	6	3	Median	1.0727	1.176	10.189	5	0	Median	1707400000	771550000	935880000	154320000	61955000	92360000	394410000	197320000	197090000	502830000	215800000	287040000	655870000	296470000	359390000	42599	954;1416	40104	259350;259351;259352;259353;259354;259355;259356;259357;259358;259359;259360;259361;259362;259363;259364;259365;259366;259367;259368;259369;259370	347735;347736;347737;347738;347739;347740;347741;347742;347743;347744;347745;347746;347747;347748;347749;347750;347751;347752;347753;347754;347755;347756;347757;347758;347759;347760;347761;347762;347763;347764;347765;347766;347767;347768;347769;347770;347771	347769			37	
QTQPTVNWVVPVADK	1	Unmodified	1680.8835	0.88352026	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	70.117	69.522	2	0.0025566	63312	160511_QHF_FH_JSI12i_1	68.463	53.32			0.73458	0.75262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73458	0.75262	NaN	1	1	Median	33703000	19279000	14424000	0	0	0	0	0	0	0	0	0	33703000	19279000	14424000	42600	5230	40105	259371	347772	347772			1	
QTQPVLQSQVENLLHR	0	Unmodified	1889.0119	0.011908675	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	71.467	70.613	3	0.0015684	61029	160511_QHF_FH_JSI12i_3	52.522	45.114			1.4085	1.2031	NaN	1	1	Median	1.4085	1.2031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10659000	4054500	6604300	10659000	4054500	6604300	0	0	0	0	0	0	0	0	0	42601	410	40106	259372;259373	347773;347774	347774			2	
QTQTFTTYSDNQPGVLIQVYEGER	0	Unmodified	2773.3195	0.31950282	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							4	4	6	6	84.217	83.703	2;3	1.0242E-301	75901	160511_QHF_FH_JSI10i_1	452.94	427.77			1.079	1.1103	6.9956	19	0	Median	1.332	1.1465	2.9227	4	0	Linear	0.90533	1.1041	8.1004	4	0	Median	1.1318	1.1426	8.9485	5	0	Median	1.0615	1.1217	6.8023	6	0	Median	3759700000	1767900000	1991800000	494580000	212180000	282410000	1032400000	521600000	510770000	916150000	400170000	515980000	1316600000	633980000	682610000	42602	985	40107	259374;259375;259376;259377;259378;259379;259380;259381;259382;259383;259384;259385;259386;259387;259388;259389;259390;259391;259392;259393	347775;347776;347777;347778;347779;347780;347781;347782;347783;347784;347785;347786;347787;347788;347789;347790;347791;347792;347793;347794;347795;347796;347797;347798;347799;347800;347801;347802;347803;347804;347805;347806;347807;347808;347809;347810;347811;347812;347813;347814;347815;347816;347817;347818;347819;347820;347821;347822;347823;347824;347825	347798			51	
QTQTFTTYSDNQPGVLIQVYEGERAMTK	1	Unmodified	3204.5397	0.53974271	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			86.235	85.678	3	1.2498E-09	76103	160511_QHF_FH_JSI10i_2	72.22	61.317			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19148000	11002000	8145900	8145900	0	8145900	11002000	11002000	0	0	0	0	0	0	0	42603	985	40108	259394;259395	347826;347827	347827			2	
QTQVNEATK	1	Unmodified	1017.5091	0.50908792	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.2456	5.9217	2	3.1695E-06	3928	160511_QHF_FH_JSI10i_1	123.86	75.076			1.2365	1.1362	15.093	4	0	Median	1.3313	1.0882	NaN	1	0	Median	0.77924	0.92134	NaN	1	0	Median	1.2125	1.1864	NaN	1	0	Median	1.2609	1.3163	NaN	1	0	Median	538180000	250900000	287280000	127780000	48052000	79723000	133750000	77329000	56416000	122220000	47539000	74681000	154440000	77979000	76457000	42604	3803	40109	259396;259397;259398;259399	347828;347829;347830;347831;347832	347831			5	
QTQVSVLPEGGETPLFK	1	Unmodified	1828.9571	0.95707914	848	P06396;CON__Q3SX14	GSN	Gelsolin	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		75.973	75.8	2	6.4013E-17	68657	160511_QHF_FH_JSI10i_1	127.02	94.955		+	0.65949	0.74978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65949	0.74978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22088000	15386000	6702200	0	0	0	22088000	15386000	6702200	0	0	0	0	0	0	42605	848	40110	259400;259401;259402	347833;347834;347835	347835			3	
QTSDGNWLMVHR	0	Unmodified	1442.6725	0.67248163	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	2	4	2	43.378	42.017	2;3	2.9345E-06	37094	160511_QHF_FH_JSI10i_2	95.417	85.092			1.1485	1.2102	15.306	10	6	Median	1.3156	1.1387	29.232	2	2	Median	1.068	1.3015	5.8265	2	2	Median	1.2181	1.1998	17.343	4	2	Median	1.1206	1.1404	3.9271	2	0	Median	1121300000	527210000	594140000	26082000	11416000	14667000	186850000	90910000	95937000	549580000	260830000	288750000	358830000	164050000	194790000	42606	479	40111	259403;259404;259405;259406;259407;259408;259409;259410;259411;259412	347836;347837;347838;347839;347840;347841;347842;347843;347844;347845;347846	347843			11	
QTSGGPVDASSEYQQELER	0	Unmodified	2079.9345	0.93450579	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	46.714	46.036	2	1.3586E-53	40916	160511_QHF_FH_JSI9i_1	211.57	186.04			0.95175	0.92554	22.976	4	0	Median	1.32	1.0775	NaN	1	0	Median	0.66807	0.79501	NaN	1	0	Median	0.77178	0.74926	NaN	1	0	Median	1.1737	1.2015	NaN	1	0	Median	247700000	131330000	116380000	58652000	25506000	33145000	44843000	29679000	15164000	89516000	50436000	39080000	54693000	25707000	28986000	42607	1149	40112	259413;259414;259415;259416	347847;347848;347849;347850;347851;347852	347852			6	
QTSGGPVDASSEYQQELERELFK	1	Unmodified	2597.2245	0.22453981	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	84.761	84.278	3	0.00011294	74204	160511_QHF_FH_JSI9i_2	53.779	34.456			1.3146	1.1863	22.323	5	1	Median	1.5242	1.2599	8.5146	2	1	Median	0.65662	0.7946	NaN	1	0	Median	1.0346	1.0088	NaN	1	0	Median	1.3146	1.353	NaN	1	0	Median	234140000	119800000	114340000	46244000	18149000	28095000	80346000	55590000	24755000	53284000	26099000	27185000	54268000	19967000	34302000	42608	1149	40113	259417;259418;259419;259420;259421	347853;347854;347855;347856;347857;347858;347859	347859			7	
QTSGMEYK	1	Unmodified	942.41168	0.41168206	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	10.415	9.9822	2	0.007793	7571	160511_QHF_FH_JSI11i_1	58.433	38.587			1.1474	1.1752	40.45	3	1	Median	0.88522	0.73435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6907	1.6429	NaN	1	0	Median	1.1474	1.1752	NaN	1	0	Median	420080000	221830000	198250000	161110000	91626000	69486000	0	0	0	125340000	53429000	71910000	133630000	76771000	56855000	42609	1299	40114	259422;259423;259424;259425	347860;347861;347862;347863	347860			4	
QTSSLVPPYLGMILTALLQGLAGR	0	Unmodified	2498.3931	0.39306588	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	105.79	98.835	2;3	2.4085E-42	59270	160513_QHF_FH_JSI10Kac_6	169.41	148.67			1.1224	1.3181	10.451	3	0	Median	NaN	NaN	NaN	0	0	Median	1.104	1.31	0.87723	2	0	Median	1.6297	1.5694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1425500000	710230000	715280000	0	0	0	1394900000	697910000	697030000	30570000	12318000	18252000	0	0	0	42610	2997	40115	259426;259427;259428;259429	347864;347865;347866;347867;347868	347867			5	
QTTIGTGEAIQIPQMSR	0	Unmodified	1829.9305	0.93054681	5788				yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	83.899	83.608	2	0.0001495	75984	160511_QHF_FH_JSI10i_1	75.695	53.649	+		0.92508	1.0493	11.27	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90359	1.0493	0	2	0	Median	0.94709	0.90922	NaN	1	1	Median	1.1201	1.1982	NaN	1	0	Median	216710000	118480000	98227000	0	0	0	140290000	80392000	59902000	32099000	16768000	15330000	44314000	21318000	22995000	42611	5788	40116	259430;259431;259432;259433	347869;347870	347870			2	
QTTITSHFAK	1	Unmodified	1132.5877	0.58767259	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			3						3	2		1	3	23.08	19.556	2;3	3.9636E-05	15972	160511_QHF_FH_JSI12i_3	105.2	80.992			1.0839	1.1241	44.97	5	5	Median	0.94008	0.7793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78416	0.74876	NaN	1	1	Median	1.3141	1.3612	35.591	3	3	Median	718830000	303590000	415240000	6147200	3487600	2659600	0	0	0	9529300	5062600	4466700	703160000	295040000	408120000	42612	1273	40117	259434;259435;259436;259437;259438;259439	347871;347872;347873;347874;347875;347876	347876			6	
QTTITSHFAKGPAK	2	Acetyl (K)	1527.8045	0.80454166	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	41.939	32.677	2;3	3.8391E-05	17931	160513_QHF_FH_JSI11Kac_6	92.773	87.388			0.61482	0.92114	32.088	4	0	Linear	1.0996	0.94551	NaN	1	0	Median	1.0642	1.2312	NaN	1	0	Median	0.58283	0.56869	NaN	1	0	Median	0.83085	0.89739	NaN	1	0	Median	62023000	32153000	29870000	11334000	5125300	6209200	14310000	6667600	7642400	20528000	11792000	8735900	15851000	8568300	7282900	42613	1273	40118	259440;259441;259442;259443;259444	347877;347878;347879;347880;347881;347882;347883;347884;347885	347878	1181		9	
QTTLAFKPIK	2	Unmodified	1145.6808	0.6808447	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	39.54	38.978	3	0.010871	33128	160511_QHF_FH_JSI12i_3	40.715	29.502			0.98637	0.88244	15.671	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98637	1.16	NaN	1	0	Median	1.1343	1.0691	NaN	1	0	Median	0.8455	0.8569	NaN	1	0	Median	238790000	104920000	133870000	0	0	0	43939000	16247000	27692000	75385000	33428000	41957000	119460000	55243000	64219000	42614	999	40119	259445;259446;259447	347886;347887;347888	347888			3	
QTTLAFKPIKK	3	Unmodified	1273.7758	0.77580772	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			29.667	28.325	3	0.0142	23530	160511_QHF_FH_JSI10i_3	44.614	23.575			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42615	999	40120	259448	347889	347889			1	
QTTQDAPEEVR	0	Unmodified	1272.5946	0.59460847	5172	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.894	12.471	2	5.8499E-13	10114	160511_QHF_FH_JSI10i_1	145.46	119.9			0.86404	0.92552	5.272	4	0	Median	1.17	0.94076	NaN	1	0	Median	0.81605	0.95325	NaN	1	0	Median	0.87021	0.8473	NaN	1	0	Median	0.85791	0.91053	NaN	1	0	Median	205520000	106610000	98912000	60082000	30219000	29863000	47779000	27447000	20333000	52598000	28458000	24140000	45064000	20489000	24576000	42616	5172	40121	259449;259450;259451;259452	347890;347891;347892;347893;347894;347895;347896	347895			7	
QTTSNLGHLNK	1	Unmodified	1211.6258	0.62584901	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	6.73	6.42		8	2					1	4	4	2	3	6	14.646	11.668	2;3	2.5875E-06	9191	160511_QHF_FH_JSI12i_3	121.9	91.644			0.44815	0.69961	42.727	15	7	Linear	0.75401	0.63492	14.586	4	2	Median	0.48833	0.5978	8.9097	2	0	Median	0.45824	0.46219	36.751	3	1	Plateau	0.75163	0.83708	52.913	6	4	Median	1106400000	679470000	426920000	222970000	130470000	92497000	222830000	148710000	74122000	224260000	148620000	75640000	436330000	251670000	184660000	42617	144	40122	259453;259454;259455;259456;259457;259458;259459;259460;259461;259462;259463;259464;259465;259466;259467	347897;347898;347899;347900;347901;347902;347903;347904;347905;347906;347907;347908;347909;347910;347911	347908			15	
QTTVSNSQQAYQEAFEISK	1	Unmodified	2158.0178	0.017841494	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	59.429	58.78	2;3	0	53272	160511_QHF_FH_JSI10i_1	482.83	468.74			0.9588	0.92283	11.662	8	2	Median	1.2146	1.0015	16.996	2	1	Median	0.72787	0.84413	2.2323	2	0	Median	0.99839	0.9841	12.255	2	1	Median	0.95587	1.007	9.1788	2	0	Median	3078100000	1557700000	1520400000	736870000	310480000	426390000	681990000	389680000	292310000	853110000	406160000	446950000	806130000	451400000	354730000	42618	1384	40123	259468;259469;259470;259471;259472;259473;259474;259475	347912;347913;347914;347915;347916;347917;347918;347919;347920;347921;347922;347923;347924;347925;347926;347927;347928;347929;347930;347931;347932;347933;347934	347926			23	
QTTVSNSQQAYQEAFEISKK	2	Unmodified	2286.1128	0.11280451	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.93	6	6	5					4	2	6	7	5	5	56.405	53.22	3;4	3.7306E-100	46133	160511_QHF_FH_JSI11i_2	258.81	242.83			0.97845	1.0057	32.978	23	3	Median	1.0034	0.81275	20.058	6	1	Median	0.73446	0.87972	51.96	7	1	Median	1.0013	1.0334	8.7089	5	0	Median	0.98776	1.0549	29.41	5	1	Median	10305000000	5429400000	4875500000	1515800000	791370000	724460000	2511000000	1338700000	1172300000	3237400000	1734200000	1503100000	3040700000	1565100000	1475600000	42619	1384	40124	259476;259477;259478;259479;259480;259481;259482;259483;259484;259485;259486;259487;259488;259489;259490;259491;259492;259493;259494;259495;259496;259497;259498	347935;347936;347937;347938;347939;347940;347941;347942;347943;347944;347945;347946;347947;347948;347949;347950;347951;347952;347953;347954;347955;347956;347957;347958;347959;347960;347961;347962;347963;347964;347965;347966;347967;347968;347969;347970;347971;347972;347973;347974;347975;347976;347977;347978;347979;347980	347965			44	
QTVADQVLVGSYCVFSNQGGLVHPK	1	Unmodified	2702.3486	0.34863488	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	3	2	88.301	84.688	3;4	1.0246E-129	41934	160513_QHF_FH_JSI11Kac_6	253.23	227.02			0.89414	0.97582	22.502	8	2	Median	0.81796	0.70912	NaN	1	0	Median	0.77654	0.95957	21.446	2	2	Median	0.87918	0.87539	13.042	3	0	Median	1.2399	1.3038	1.0695	2	0	Median	270530000	138250000	132280000	34651000	20066000	14585000	70846000	39304000	31543000	96031000	48296000	47735000	69001000	30583000	38418000	42620	1881	40125	259499;259500;259501;259502;259503;259504;259505;259506;259507	347981;347982;347983;347984;347985;347986;347987;347988;347989;347990;347991;347992;347993	347983			12	
QTVAVGVIK	1	Unmodified	913.55967	0.55966693	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.05	9	4	4	3	4	4	3	4	4	10	9	11	9	43.818	38.019	2	1.4645E-11	19891	160513_QHF_FH_JSI10Kac_4	158.87	69.122			0.96457	0.96366	30.28	38	5	Median	1.0759	0.8908	57.603	9	3	Median	0.86048	0.92974	14.461	9	0	Median	0.98065	0.97476	22.739	11	2	Median	0.92776	0.96196	6.5961	9	0	Median	81638000000	39705000000	41932000000	21816000000	10604000000	11212000000	19226000000	9717900000	9508200000	20801000000	10250000000	10551000000	19794000000	9133200000	10661000000	42621	2072;2231	40126	259508;259509;259510;259511;259512;259513;259514;259515;259516;259517;259518;259519;259520;259521;259522;259523;259524;259525;259526;259527;259528;259529;259530;259531;259532;259533;259534;259535;259536;259537;259538;259539;259540;259541;259542;259543;259544;259545;259546	347994;347995;347996;347997;347998;347999;348000;348001;348002;348003;348004;348005;348006;348007;348008;348009;348010;348011;348012;348013;348014;348015;348016;348017;348018;348019;348020;348021;348022;348023;348024;348025;348026;348027;348028;348029;348030;348031;348032;348033;348034;348035;348036;348037;348038;348039;348040;348041;348042;348043;348044;348045;348046;348047;348048;348049;348050;348051;348052;348053;348054;348055;348056;348057;348058;348059;348060;348061;348062;348063;348064;348065;348066;348067;348068;348069;348070;348071;348072;348073;348074;348075;348076;348077;348078;348079;348080;348081;348082;348083;348084;348085;348086;348087;348088;348089;348090;348091;348092;348093;348094	348023			101	
QTVAVGVIKAVDK	2	Unmodified	1326.7871	0.78710068	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	45.424	45.183	2;3	1.6916E-07	38546	160511_QHF_FH_JSI12i_3	101.93	72.456			1.0559	1.0567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0559	1.0567	NaN	1	1	Median	159470000	73118000	86353000	0	0	0	0	0	0	0	0	0	159470000	73118000	86353000	42622	2072	40127	259547;259548;259549;259550	348095;348096;348097;348098	348098			4	
QTVAVGVIKAVDK	2	Acetyl (K)	1368.7977	0.79766537	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	1.02					3	7	7	8		3	6	8	8	70.493	60.206	2;3	1.0427E-24	33123	160513_QHF_FH_JSI11Kac_5	166.6	104.3			0.73215	0.82342	114.93	22	1	Median	0.963	0.79265	3.5698	3	0	Plateau	0.73215	0.87045	18.421	6	0	Median	0.42483	0.42265	213.47	7	1	Median	0.78568	0.8549	15.398	6	0	Median	801240000	428850000	372390000	88664000	49848000	38816000	261830000	128300000	133530000	215130000	128140000	86988000	235610000	122550000	113050000	42623	2072	40127	259551;259552;259553;259554;259555;259556;259557;259558;259559;259560;259561;259562;259563;259564;259565;259566;259567;259568;259569;259570;259571;259572;259573;259574;259575	348099;348100;348101;348102;348103;348104;348105;348106;348107;348108;348109;348110;348111;348112;348113;348114;348115;348116;348117;348118;348119;348120;348121;348122;348123;348124;348125;348126;348127;348128;348129;348130;348131;348132;348133;348134;348135;348136;348137;348138;348139;348140	348130	2155		42	
QTVAVGVIKAVDKK	3	Acetyl (K)	1496.8926	0.89262839	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.514							1	8	2	2	2	4	3	65.77	55.164	2;3	0.00027711	29876	160513_QHF_FH_JSI11Kac_5	109.04	86.503			0.050338	0.056841	92.749	4	4	Median	NaN	NaN	NaN	0	0	Median	0.037637	0.04505	NaN	1	1	Median	0.011416	0.011266	NaN	1	1	Median	0.073328	0.079742	14.996	2	2	Median	142710000	141370000	1343800	0	0	0	22527000	21959000	568820	106020000	105640000	381070	14164000	13771000	393910	42624	2072	40128	259576;259577;259578;259579;259580;259581;259582;259583;259584;259585;259586	348141;348142;348143;348144;348145;348146;348147;348148;348149;348150;348151;348152	348144	2155		12	
QTVFYMEDYLTVK	1	Unmodified	1635.7854	0.7854457	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								2	2	3	2	87.536	87.007	2	5.992E-07	75078	160511_QHF_FH_JSI12i_2	150.68	118.67			0.88855	0.86201	45.24	8	5	Median	0.87297	0.78931	7.7723	2	2	Median	0.82254	0.98108	19.068	2	1	Median	0.89341	0.8995	5.2525	2	2	Median	1.4275	1.5541	93.1	2	0	Median	416900000	225360000	191540000	94587000	50941000	43646000	95388000	50138000	45250000	154370000	89955000	64414000	72560000	34326000	38234000	42625	4325	40129	259587;259588;259589;259590;259591;259592;259593;259594;259595	348153;348154;348155;348156;348157;348158;348159;348160;348161;348162;348163;348164	348154			12	
QTVIQDPMPMEPQGQK	1	Unmodified	1825.8703	0.87025474	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		54.698	54.286	2	1.5767E-27	49195	160511_QHF_FH_JSI11i_1	144.57	123.27			0.88532	0.8487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88532	0.8487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20339000	12299000	8040300	0	0	0	0	0	0	20339000	12299000	8040300	0	0	0	42626	3838	40130	259596;259597;259598	348165;348166;348167	348166			3	
QTVMFSATFPR	0	Unmodified	1283.6332	0.63324258	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	1	2	71.452	64.199	2	5.1668E-11	35348	160513_QHF_FH_JSI10Kac_6	135.8	117.93			0.93442	1.0297	18.573	5	1	Median	1.2002	1.0297	NaN	1	0	Median	0.93149	1.1135	NaN	1	0	Median	1.1111	1.0872	NaN	1	0	Median	0.77072	0.82915	23.049	2	1	Median	440850000	233590000	207260000	87809000	41013000	46797000	125370000	66857000	58512000	89392000	41423000	47969000	138280000	84298000	53984000	42627	3216	40131	259599;259600;259601;259602;259603	348168;348169;348170;348171;348172;348173;348174;348175;348176	348176			9	
QTVMFSATFPR	0	Oxidation (M)	1299.6282	0.6281572	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	15.2	0.433								3	1	2	1		1	66.909	56.672	2	0.0019065	30112	160513_QHF_FH_JSI9Kac_6	70.942	52.63			1.1477	1.1448	5.9679	4	0	Median	1.3227	1.1269	6.2045	2	0	Median	1.0478	1.2338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0478	1.1131	NaN	1	0	Median	31962000	14446000	17516000	26357000	11585000	14772000	3534700	1907800	1626900	0	0	0	2070200	953570	1116700	42628	3216	40131	259604;259605;259606;259607	348177;348178;348179	348179		2221	3	
QTVMTVVYGVTR	0	Oxidation (M)	1368.7071	0.7071358	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		1	3	1	2	53.869	43.283	2	0.00060257	23233	160513_QHF_FH_JSI9Kac_5	82.171	77.872			1.148	1.145	8.7206	6	0	Median	1.3305	1.0761	NaN	1	0	Median	0.88394	1.0545	6.6924	2	0	Median	1.188	1.1858	NaN	1	0	Median	1.1508	1.2436	3.7239	2	0	Median	27557000	13521000	14035000	5883900	2547300	3336600	12132000	6232600	5899800	3905200	1497500	2407700	5635300	3244100	2391200	42629	128	40132	259608;259609;259610;259611;259612;259613;259614	348180;348181;348182;348183	348180		57	4	
QTVMTVVYGVTR	0	Unmodified	1352.7122	0.71222118	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								4	4	2	2	2	2	70.466	60.678	2	4.7144E-20	33208	160513_QHF_FH_JSI10Kac_6	160.52	141.85			0.92797	0.97594	6.1254	8	0	Median	1.2104	1.0368	3.5037	2	0	Median	0.7867	0.91315	3.4923	2	0	Median	1.0399	1.0064	3.0721	2	0	Median	0.84411	0.93833	4.2915	2	0	Median	174270000	89181000	85090000	51064000	24745000	26319000	64853000	32430000	32423000	39369000	21817000	17553000	18985000	10189000	8795800	42630	128	40132	259615;259616;259617;259618;259619;259620;259621;259622	348184;348185;348186;348187;348188;348189;348190;348191;348192;348193;348194	348193			11	
QTVSMAINEVFNELILDVLK	1	Unmodified	2275.2134	0.21337018	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.58	97.863	3	6.9203E-09	57945	160513_QHF_FH_JSI10Kac_6	103.95	91.284			0.77775	0.93032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77775	0.93032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91368000	50097000	41271000	0	0	0	91368000	50097000	41271000	0	0	0	0	0	0	42631	5289	40133	259623	348195	348195			1	
QTWLLLHMYDSDK	1	Unmodified	1648.7919	0.79192806	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	81.035	71.657	3	3.0495E-06	39384	160513_QHF_FH_JSI11Kac_6	95.428	84.484			1.013	1.0527	4.1148	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0185	1.0225	NaN	1	0	Median	1.0076	1.0838	NaN	1	0	Median	58727000	28578000	30149000	0	0	0	0	0	0	35556000	17157000	18398000	23171000	11421000	11750000	42632	4372	40134	259624;259625	348196	348196			1	
QTWLLLHMYDSDKVPDEHFSTLLAYLEGLQGR	1	Unmodified	3774.8716	0.87158195	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			96.84	91.119	4;5	7.5372E-185	52898	160513_QHF_FH_JSI10Kac_6	281.11	262.32			0.67052	0.80553	11.014	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67052	0.80553	11.014	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	885180000	510030000	375140000	0	0	0	885180000	510030000	375140000	0	0	0	0	0	0	42633	4372	40135	259626;259627	348197;348198;348199	348199			3	
QTWMDNMGR	0	Unmodified	1137.4695	0.46954807	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1.67	0.471	1	2								1		1	1	38.994	38.099	2	0.0071402	32408	160511_QHF_FH_JSI12i_2	53.753	49.553			1.0616	1.1493	16.806	3	0	Plateau	1.0967	0.93192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.378	1.2993	NaN	1	0	Median	1.0616	1.1493	NaN	1	0	Median	80832000	39249000	41583000	24873000	12050000	12823000	0	0	0	23350000	10815000	12535000	32609000	16384000	16225000	42634	999	40136	259628;259629;259630	348200;348201	348200			2	
QTWMNNMMK	1	Unmodified	1182.4984	0.49840536	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.851	46.337	2	0.0044841	39908	160511_QHF_FH_JSI11i_2	56.81	48.628			0.86942	0.90903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86942	0.90903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21942000	12406000	9536500	0	0	0	0	0	0	21942000	12406000	9536500	0	0	0	42635	2197	40137	259631	348202	348202			1	
QTWTDEGSVSER	0	Unmodified	1393.611	0.61098681	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.499	25.925	2	0.0014912	22976	160511_QHF_FH_JSI12i_1	62.303	43.523			0.72616	0.96509	22.826	4	0	Linear	1.1704	0.9752	NaN	1	0	Median	0.80222	0.95508	NaN	1	0	Median	0.69336	0.65155	NaN	1	0	Median	1.083	1.105	NaN	1	0	Median	150690000	73797000	76889000	23724000	11114000	12610000	44753000	24028000	20725000	49500000	26560000	22940000	32709000	12094000	20615000	42636	5142	40138	259632;259633;259634;259635	348203;348204;348205;348206;348207;348208;348209	348206			7	
QTYFLPVIGLVDAEK	1	Unmodified	1691.9134	0.91342341	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	101.74	101.63	2;3	3.4412E-21	87486	160511_QHF_FH_JSI12i_2	170.79	147.9			0.89618	0.95888	21.512	6	2	Median	1.0671	0.92636	NaN	1	0	Median	0.65263	0.80211	39.178	2	1	Median	0.90264	0.92995	NaN	1	0	Median	0.93945	1.0471	8.1226	2	1	Median	1764700000	946970000	817690000	282240000	167170000	115070000	447070000	254770000	192300000	572690000	288240000	284460000	462650000	236800000	225850000	42637	1131	40139	259636;259637;259638;259639;259640;259641	348210;348211;348212;348213;348214;348215	348210			6	
QTYSTEPNNLK	1	Unmodified	1293.6201	0.62009493	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	5.34	4	5	5		3	6	1			5	7	7	5	23.158	19.126	2	3.4576E-88	17290	160511_QHF_FH_JSI10i_1	264.3	247.52			0.97632	1.0247	21.101	22	6	Median	1.351	0.98756	7.4442	4	1	Linear	0.90631	1.0842	34.433	7	2	Median	1.0265	0.98597	13.134	6	3	Median	0.93071	0.97864	14.739	5	0	Median	9029500000	4724300000	4305200000	2177800000	1091300000	1086600000	1921100000	1022600000	898540000	2300200000	1103900000	1196400000	2630200000	1506600000	1123700000	42638	1592	40140	259642;259643;259644;259645;259646;259647;259648;259649;259650;259651;259652;259653;259654;259655;259656;259657;259658;259659;259660;259661;259662;259663;259664;259665	348216;348217;348218;348219;348220;348221;348222;348223;348224;348225;348226;348227;348228;348229;348230;348231;348232;348233;348234;348235;348236;348237;348238;348239;348240;348241;348242;348243;348244;348245;348246;348247;348248;348249;348250;348251;348252;348253;348254;348255;348256;348257;348258;348259;348260;348261	348237			46	
QTYSTEPNNLKAR	1	Acetyl (K)	1562.7689	0.76888444	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			38.459	29.602	2	0.0031198	16375	160513_QHF_FH_JSI10Kac_3	69.979	51.668			1.1262	1.3333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1262	1.3333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4035200	1774100	2261200	0	0	0	4035200	1774100	2261200	0	0	0	0	0	0	42639	1592	40141	259666	348262;348263	348263	1614		2	
QVAASTAQLLVACK	1	Unmodified	1458.7864	0.78644876	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	54.752	54.261	2	6.2435E-05	49397	160511_QHF_FH_JSI12i_1	116.54	82.672			1.6793	1.8901	108.93	3	3	Median	NaN	NaN	NaN	0	0	Median	1.6793	1.8901	NaN	1	1	Median	1.3243	1.2651	NaN	1	1	Median	9.4611	9.8786	NaN	1	1	Median	108000000	31869000	76131000	0	0	0	30208000	10779000	19429000	47291000	18403000	28887000	30501000	2686800	27815000	42640	5616;5628	40142	259667;259668;259669	348264;348265;348266	348265			3	
QVAAVGQEPQVFGR	0	Unmodified	1484.7736	0.77357588	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	1	3	49.574	48.737	2	7.842E-10	44445	160511_QHF_FH_JSI12i_1	106.67	71.443			0.70331	0.78001	12.289	6	1	Median	1.0351	0.87659	NaN	1	0	Median	0.58544	0.70664	17.768	2	0	Median	0.71162	0.71854	NaN	1	0	Median	0.75643	0.79882	7.1688	2	1	Median	386500000	229120000	157380000	71299000	42322000	28977000	126480000	79122000	47355000	70586000	41364000	29222000	118140000	66310000	51827000	42641	2211	40143	259670;259671;259672;259673;259674;259675;259676	348267;348268;348269;348270;348271;348272;348273;348274;348275;348276	348270			10	
QVAEAYEVLSDAK	1	Unmodified	1421.7038	0.70382456	491	O75190;Q8WWF6	DNAJB6;DNAJB3	DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.736	55.994	2	2.3623E-17	50537	160511_QHF_FH_JSI10i_1	142.12	120.12			1.0934	1.0625	51.249	3	3	Plateau	0.46353	0.38128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0934	1.0625	NaN	1	1	Median	0.62952	0.64654	NaN	1	1	Median	336770000	192240000	144530000	111070000	74691000	36383000	0	0	0	125320000	60421000	64902000	100370000	57127000	43246000	42642	491	40144	259677;259678;259679;259680	348277;348278;348279;348280	348279			4	
QVAEQFLNMR	0	Unmodified	1234.6128	0.61284149	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	55.317	54.556	2	1.0229E-25	47119	160511_QHF_FH_JSI11i_2	191.85	176.27			0.95712	1.0109	10.922	5	0	Median	1.0722	0.92558	NaN	1	0	Median	0.81943	1.0109	NaN	1	0	Median	1.1383	1.1063	16.056	2	0	Median	0.94089	1.0409	NaN	1	0	Median	1879800000	933410000	946390000	289150000	134650000	154500000	351590000	199420000	152170000	862290000	416010000	446280000	376770000	183330000	193450000	42643	1216	40145	259681;259682;259683;259684;259685;259686	348281;348282;348283;348284;348285;348286;348287;348288;348289	348286			8	
QVAFDFTK	1	Unmodified	954.48108	0.48108226	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	51.728	50.948	2	0.0055333	43899	160511_QHF_FH_JSI11i_2	62.582	28.18			1.0197	0.99398	9.4058	6	0	Median	1.0904	0.92494	9.3731	2	0	Median	0.80587	0.97518	4.5595	2	0	Median	1.0226	0.99967	NaN	1	0	Median	1.1096	1.1543	NaN	1	0	Median	275550000	142100000	133460000	81530000	38693000	42837000	97116000	55872000	41245000	55678000	27480000	28198000	41228000	20051000	21177000	42644	2425	40146	259687;259688;259689;259690;259691;259692;259693	348290;348291;348292;348293	348293			4	
QVAGTMK	1	Unmodified	733.37926	0.37925972	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.94	3	4	4				3			2	5	3	4	7.6138	5.4219	2	0.0017464	4601	160511_QHF_FH_JSI11i_1	117.16	54.445			1.0551	1.1346	22.878	13	2	Median	2.1689	1.8006	12.343	2	1	Median	0.85207	1.006	13.821	4	1	Median	1.2382	1.267	12.318	3	0	Plateau	1.1071	1.182	14.005	4	0	Median	8142100000	3640300000	4501800000	1026600000	311070000	715570000	2711200000	1423900000	1287300000	2480100000	940830000	1539300000	1924100000	964550000	959540000	42645	1263	40147	259694;259695;259696;259697;259698;259699;259700;259701;259702;259703;259704;259705;259706;259707	348294;348295;348296;348297;348298;348299;348300;348301;348302;348303;348304;348305;348306;348307;348308;348309;348310	348294			17	
QVAGTMK	1	Oxidation (M)	749.37417	0.37417435	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	3.4776	3.2524	2	0.055965	1722	160511_QHF_FH_JSI10i_1	48.787	21.62			1.1074	1.1634	1.2292	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98628	1.1894	NaN	1	0	Median	1.2643	1.1868	NaN	1	0	Median	1.1074	1.1632	NaN	1	0	Median	209550000	109450000	100100000	0	0	0	65104000	34561000	30543000	66957000	35663000	31294000	77488000	39226000	38262000	42646	1263	40147	259708;259709;259710	348311	348311			1	
QVAIVFR	0	Unmodified	831.49667	0.49667274	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			46.105	45.141	2	0.029346	39823	160511_QHF_FH_JSI10i_2	54.765	15.743			0.64311	0.78479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64311	0.78479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27093000	16510000	10583000	0	0	0	27093000	16510000	10583000	0	0	0	0	0	0	42647	2214	40148	259711	348312	348312			1	
QVALADAILINK	1	Unmodified	1267.75	0.7499869	3396	Q9BRT8;Q8IUF1	CBWD1;CBWD2	COBW domain-containing protein 1;COBW domain-containing protein 2	yes	no	0	0	0	0				By MS/MS	2	0		1											1	75.562	74.301	2	0.014381	64201	160511_QHF_FH_JSI12i_2	52.725	35.252			0.3785	0.42763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3785	0.42763	NaN	1	1	Median	9439300	6337000	3102300	0	0	0	0	0	0	0	0	0	9439300	6337000	3102300	42648	3396	40149	259712	348313	348313			1	
QVAPEKPVK	2	Unmodified	994.58113	0.58113065	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.617	1	6	4							1	2	5	3	9.9391	9.7087	2;3	0.0026897	6981	160511_QHF_FH_JSI12i_3	81.548	49.613			1.0164	1.0404	40.834	11	4	Median	1.3338	1.1352	NaN	1	1	Median	1.2283	1.519	38.693	2	1	Median	0.90293	0.91465	38.868	5	2	Median	1.5815	1.578	25.713	3	0	Plateau	2880800000	1479100000	1401700000	84415000	35368000	49047000	412600000	200940000	211660000	973550000	508250000	465310000	1410300000	734560000	675690000	42649	1815	40150	259713;259714;259715;259716;259717;259718;259719;259720;259721;259722;259723	348314;348315;348316;348317;348318;348319;348320;348321;348322;348323;348324;348325;348326;348327	348326			14	
QVAPEKPVK	2	Acetyl (K)	1036.5917	0.59169534	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	1.31				2	3	5	3	4		2	4	5	6	31.89	22.499	2;3	3.09E-05	5703	160513_QHF_FH_JSI9Kac_3	128.38	48.915			0.93924	1.0038	8.4287	17	0	Median	1.1206	0.97042	0.92593	2	0	Median	0.80831	0.95283	11.119	4	0	Median	1.0659	1.0122	8.627	5	0	Median	0.93923	1.0153	8.2554	6	0	Median	1655700000	834820000	820930000	628800000	300720000	328080000	331290000	186670000	144630000	254970000	131610000	123360000	440680000	215820000	224860000	42650	1815	40150	259724;259725;259726;259727;259728;259729;259730;259731;259732;259733;259734;259735;259736;259737;259738;259739;259740	348328;348329;348330;348331;348332;348333;348334;348335;348336;348337;348338;348339;348340;348341;348342;348343;348344;348345;348346;348347;348348;348349;348350;348351;348352;348353;348354;348355;348356;348357	348336	1835		30	
QVAPEKPVKK	3	Unmodified	1122.6761	0.67609367	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							3	2	3	3	6.8903	6.6508	2;3;4	2.9656E-05	4307	160511_QHF_FH_JSI11i_3	129.38	67.42			0.57905	0.5846	24.275	10	10	Median	0.76609	0.61084	16.615	3	3	Plateau	0.37358	0.42943	42.661	2	2	Median	0.56625	0.54745	6.662	3	3	Median	0.55296	0.57343	9.4516	2	2	Median	9358900000	4384000000	4974900000	1543500000	619670000	923810000	1275500000	760650000	514840000	4073700000	1746200000	2327600000	2466200000	1257500000	1208700000	42651	1815	40151	259741;259742;259743;259744;259745;259746;259747;259748;259749;259750;259751	348358;348359;348360;348361;348362;348363;348364;348365;348366;348367;348368	348359			11	
QVAPEKPVKK	3	Acetyl (K)	1164.6867	0.68665836	1815	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.954						2	3	5	2	2	3	3	4	25.289	16.943	2;3	2.1248E-06	10935	160513_QHF_FH_JSI12Kac_4	124.67	81.951			0.85547	0.88773	11.107	11	0	Median	0.94892	0.79303	8.425	2	0	Median	0.81974	0.9589	9.9102	3	0	Median	0.79772	0.79237	5.8998	2	0	Median	0.87529	0.9414	6.3958	4	0	Median	560900000	287540000	273360000	39610000	19479000	20131000	175970000	93831000	82143000	121430000	60153000	61275000	223890000	114080000	109810000	42652	1815	40151	259752;259753;259754;259755;259756;259757;259758;259759;259760;259761;259762;259763	348369;348370;348371;348372;348373;348374;348375;348376;348377;348378;348379;348380;348381;348382;348383;348384;348385;348386;348387	348375	1835		19	
QVAPESHWPELR	0	Unmodified	1447.7208	0.72081203	1801	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		44.237	44.237	3	0.041839	39099	160511_QHF_FH_JSI11i_3	40.066	16.83			1.1623	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1623	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30384000	16086000	14298000	0	0	0	0	0	0	30384000	16086000	14298000	0	0	0	42653	1801	40152	259764	348388	348388			0	
QVAQASHSYR	0	Unmodified	1145.5578	0.55776945	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			6.2788	5.8499	2	0.0055151	3939	160511_QHF_FH_JSI10i_2	55.908	27.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42654	382	40153	259765	348389	348389			1	
QVAQLHPLSGYSITK	1	Unmodified	1640.8886	0.88860564	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	52.807	52.572	2;3	0.0013379	44953	160511_QHF_FH_JSI12i_3	52.522	44.931			0.94048	0.9792	32.271	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94048	0.9792	32.271	2	0	Median	280070000	138010000	142060000	0	0	0	0	0	0	0	0	0	280070000	138010000	142060000	42655	3236	40154	259766;259767	348390;348391;348392	348390			3	
QVAQQEAER	0	Unmodified	1057.5152	0.51523593	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.6	6	1			1	3				3	2	2	4	6.1517	3.7075	2	9.8346E-33	2452	160513_QHF_FH_JSI11Kac_3	195.17	136.19			1.014	0.96638	7.6985	10	0	Median	1.1214	0.91933	1.7172	3	0	Median	0.76014	0.89839	5.4008	2	0	Median	1.0111	0.99836	1.2396	2	0	Median	1.0056	1.0961	6.1141	3	0	Median	6654700000	3183500000	3471200000	1567700000	747810000	819860000	1542100000	813510000	728570000	1595000000	641100000	953880000	1950000000	981100000	968850000	42656	1424	40155	259768;259769;259770;259771;259772;259773;259774;259775;259776;259777;259778	348393;348394;348395;348396;348397;348398;348399;348400;348401;348402;348403;348404;348405;348406;348407;348408;348409	348398			17	
QVAQQEAQR	0	Unmodified	1056.5312	0.53122035	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.67	4	4	1		1	3	2			2	5	4	4	5.6359	2.349	2	1.4803E-56	2045	160513_QHF_FH_JSI12Kac_3	230.09	179.13			1.0411	1.0377	10.104	15	0	Median	1.2244	1.0347	0.42071	2	0	Median	0.84957	1.0074	14.669	5	0	Median	1.0027	0.98874	4.7335	4	0	Median	1.0825	1.142	4.9201	4	0	Median	11125000000	5653900000	5471100000	2293800000	1009100000	1284700000	3320300000	1895100000	1425200000	2682700000	1328900000	1353800000	2828200000	1420800000	1407400000	42657	4296	40156	259779;259780;259781;259782;259783;259784;259785;259786;259787;259788;259789;259790;259791;259792;259793	348410;348411;348412;348413;348414;348415;348416;348417;348418;348419;348420;348421;348422;348423;348424;348425;348426;348427;348428;348429;348430;348431	348429			22	
QVAQSEAEK	1	Unmodified	988.48254	0.48253882	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.6408	5.3169	2	3.609E-11	3217	160511_QHF_FH_JSI11i_1	156.35	108.5			3.5958	3.4798	79.211	4	1	Median	7.5986	6.3304	NaN	1	0	Median	1.6296	1.9128	NaN	1	1	Median	1.7387	1.6929	NaN	1	0	Median	7.4365	7.7868	NaN	1	0	Median	842550000	246830000	595730000	164420000	25033000	139390000	252440000	101860000	150580000	263340000	94443000	168900000	162340000	25488000	136850000	42658	3754	40157	259794;259795;259796;259797	348432;348433;348434;348435;348436	348432			4	
QVASHVGLHSASIPGILALDLCPSDTNK	1	Unmodified	2899.4862	0.486191	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	86.503	86.427	4	5.2112E-06	77187	160511_QHF_FH_JSI11i_3	52.685	45.81			0.86837	0.85676	20.557	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79229	0.74085	NaN	1	0	Median	0.95175	0.99081	NaN	1	1	Median	67583000	36318000	31265000	0	0	0	0	0	0	49964000	27897000	22067000	17619000	8421000	9197600	42659	5426	40158	259798;259799	348437;348438;348439;348440	348439			4	
QVASMTKPTTIIEK	2	Unmodified	1545.8436	0.84362928	838	P05413	FABP3	Fatty acid-binding protein, heart	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		39.825	39.825	3	0.00014886	34978	160511_QHF_FH_JSI11i_3	95.981	71.791			0.87091	0.81984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87091	0.81984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74998000	39337000	35661000	0	0	0	0	0	0	74998000	39337000	35661000	0	0	0	42660	838	40159	259800	348441	348441			1	
QVASPFTLIIDDPSGNSFVENPHAPQK	1	Unmodified	2907.4403	0.44028666	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	94.728	94.236	3	1.6046E-08	83401	160511_QHF_FH_JSI10i_2	70.533	63.81			0.73177	0.84702	9.8554	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73972	0.90815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72391	0.79	NaN	1	0	Median	37488000	19300000	18188000	0	0	0	18906000	9521900	9383600	0	0	0	18582000	9778000	8804400	42661	498	40160	259801;259802	348442;348443;348444;348445;348446;348447;348448	348447			7	
QVATALQNLQTK	1	Unmodified	1313.7303	0.73031409	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.86	4	4	4				3			3	3	4	5	43.978	41.302	2	3.6663E-53	36028	160511_QHF_FH_JSI9i_2	217.22	176.87			0.97931	1.0162	30.518	14	3	Median	1.5019	1.2602	40.698	2	0	Median	0.86537	1.0296	12.345	3	0	Plateau	1.0336	1.0162	27.589	4	1	Median	0.97951	1.0969	42.102	5	2	Median	2215300000	1054700000	1160600000	350280000	127580000	222700000	506600000	275720000	230890000	798910000	374280000	424620000	559490000	277110000	282380000	42662	1139	40161	259803;259804;259805;259806;259807;259808;259809;259810;259811;259812;259813;259814;259815;259816;259817	348449;348450;348451;348452;348453;348454;348455;348456;348457;348458;348459;348460;348461;348462;348463	348455			15	
QVAYIYK	1	Unmodified	883.48035	0.48035398	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.87	6.4	4	4	1				2	4		3	4	4	4	34.788	30.055	2	0.0016721	26140	160511_QHF_FH_JSI9i_2	118.01	76.709			0.82489	0.8784	31.958	14	4	Median	1.0407	0.88481	26.333	3	0	Median	0.70295	0.8406	12.403	4	1	Median	0.89868	0.88953	20.585	4	1	Median	1.2933	1.4542	63.328	3	2	Median	2185600000	1091500000	1094000000	322350000	143510000	178840000	620510000	337810000	282700000	741310000	390550000	350760000	501390000	219640000	281750000	42663	2169	40162	259818;259819;259820;259821;259822;259823;259824;259825;259826;259827;259828;259829;259830;259831;259832	348464;348465;348466;348467;348468;348469;348470;348471;348472;348473;348474;348475;348476;348477;348478;348479	348474			16	
QVCEIIESPLFLK	1	Unmodified	1574.8378	0.83781563	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.838	90.144	2	0.0013687	79186	160511_QHF_FH_JSI11i_2	74.611	54.404			0.5438	0.56438	14.608	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51334	0.50899	NaN	1	1	Median	0.57607	0.62579	NaN	1	1	Median	44475000	31068000	13408000	0	0	0	0	0	0	26660000	18049000	8610300	17816000	13018000	4797200	42664	3232	40163	259833;259834	348480;348481	348481			2	
QVCPLDNREWEFQK	1	Unmodified	1847.8625	0.86246725	2031	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	57.124	56.504	3	3.6553E-10	48562	160511_QHF_FH_JSI12i_3	147.35	136.08			1.019	1.0417	19.763	5	0	Median	1.5571	1.36	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0764	1.0538	1.6342	2	0	Median	0.80897	0.86598	13.263	2	0	Median	405770000	198290000	207480000	36940000	15931000	21008000	0	0	0	217660000	97209000	120460000	151170000	85149000	66021000	42665	2031	40164	259835;259836;259837;259838;259839	348482;348483;348484	348484			3	
QVCQLPGLFSYAQHIASIDGR	0	Unmodified	2359.1743	0.17429933	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			100.38	100.21	3	1.641E-05	82866	160511_QHF_FH_JSI10i_3	72.086	64.464			1.1699	1.3725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1699	1.3725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17691000	7493400	10197000	0	0	0	17691000	7493400	10197000	0	0	0	0	0	0	42666	5717	40165	259840	348485	348485			1	
QVDAESWK	1	Unmodified	961.45051	0.45051041	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	4						4			1	3	2	2	28.465	24.216	2	0.0020853	14996	160513_QHF_FH_JSI11Kac_4	93.162	64.944			0.86958	1.0317	15.419	7	0	Linear	1.0873	0.88608	NaN	1	0	Median	0.69826	0.83502	23.37	2	0	Median	0.93951	0.912	9.6869	2	0	Median	0.84402	0.90145	26.353	2	0	Median	2641000000	1253300000	1387600000	276980000	119450000	157530000	812870000	429330000	383550000	596140000	185840000	410300000	954960000	518720000	436240000	42667	1282	40166	259841;259842;259843;259844;259845;259846;259847;259848	348486;348487;348488;348489;348490;348491;348492;348493;348494;348495;348496	348491			11	
QVDEEAALEQAVK	1	Unmodified	1428.7096	0.70963822	5731	Q9Y6J0	CABIN1	Calcineurin-binding protein cabin-1	yes	yes	0	0	0	0				By MS/MS	13	0						2							2	62.049	52.84	2	0.00043075	27608	160513_QHF_FH_JSI12Kac_3	91.855	63.128			0.77201	0.84508	10.229	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77201	0.84508	10.229	2	2	Median	10003000	6609600	3393100	0	0	0	0	0	0	0	0	0	10003000	6609600	3393100	42668	5731	40167	259849;259850	348497;348498	348497			2	
QVDENWYEGRIPGTSR	0	Unmodified	1905.8969	0.8969385	4509	Q9BX66	SORBS1	Sorbin and SH3 domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		21.335	21.335	3	0.041665	17994	160511_QHF_FH_JSI11i_3	26.435	9.3569			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14181000	0	14181000	0	0	0	0	0	0	14181000	0	14181000	0	0	0	42669	4509	40168	259851	348499	348499			1	
QVDGDNSHVEMK	1	Unmodified	1357.5932	0.59322826	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	3.07	8	7					1			4	4	3	5	12.675	11.701	2;3	1.0799E-22	9584	160511_QHF_FH_JSI12i_1	170.4	151.73			0.98619	1.0451	21.045	15	1	Median	1.392	1.1666	11.229	4	0	Median	0.85868	1.0354	11.077	4	0	Median	1.0308	1.0108	9.4965	2	0	Median	0.91285	0.96579	35.68	5	1	Median	3984800000	1966700000	2018000000	747620000	238660000	508960000	1032100000	592360000	439780000	1053000000	566230000	486800000	1152000000	569500000	582500000	42670	793	40169	259852;259853;259854;259855;259856;259857;259858;259859;259860;259861;259862;259863;259864;259865;259866;259867	348500;348501;348502;348503;348504;348505;348506;348507;348508;348509;348510;348511;348512;348513;348514;348515;348516;348517;348518;348519;348520;348521;348522;348523;348524;348525;348526;348527	348507			28	
QVDGDNSHVEMK	1	Oxidation (M)	1373.5881	0.58814288	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	8										3	1	4	9.4212	9.1369	2;3	7.6889E-05	9456	160511_QHF_FH_JSI11i_1	92.039	85			1.0519	1.0759	57.956	5	5	Median	NaN	NaN	NaN	0	0	Median	0.87866	1.0348	38.267	2	2	Median	1.3755	1.3376	NaN	1	1	Median	0.59408	0.60093	82.363	2	2	Median	362980000	183800000	179180000	0	0	0	92114000	51048000	41066000	146100000	55947000	90155000	124760000	76804000	47958000	42671	793	40169	259868;259869;259870;259871;259872;259873;259874;259875	348528;348529;348530;348531;348532;348533;348534;348535	348528		310	8	
QVDHLIK	1	Unmodified	851.4865	0.48650199	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	15.527	14.88	3	0.0020824	11865	160511_QHF_FH_JSI11i_2	77.282	43.279			1.0527	1.1002	26.486	4	0	Median	1.4094	1.2045	NaN	1	0	Median	0.55666	0.67307	NaN	1	0	Median	1.1081	1.0768	NaN	1	0	Median	1	1.1241	NaN	1	0	Median	544940000	267190000	277750000	113600000	43709000	69889000	120630000	75960000	44671000	151440000	67758000	83682000	159270000	79766000	79506000	42672	3955	40170	259876;259877;259878;259879	348536;348537;348538;348539;348540;348541;348542	348540			7	
QVDLENVWLHFIR	0	Unmodified	1667.8784	0.87837531	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	1	2	3	3	97.418	93.669	3	6.7676E-21	48963	160513_QHF_FH_JSI10Kac_6	157.22	136.42			1.3778	1.4121	58.013	9	0	Median	1.463	1.2682	NaN	1	0	Median	1.0173	1.2164	21.095	2	0	Median	2.6502	2.5095	90.134	3	0	Plateau	1.564	1.7332	50.831	3	0	Median	1598800000	527890000	1070900000	84466000	38579000	45887000	272540000	140790000	131750000	554290000	148340000	405950000	687530000	200180000	487350000	42673	140	40171	259880;259881;259882;259883;259884;259885;259886;259887;259888	348543;348544;348545;348546;348547;348548;348549;348550	348550			8	
QVDLIDLVR	0	Unmodified	1069.6132	0.61315906	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.721	79.935	2	0.0022967	70238	160511_QHF_FH_JSI11i_2	65.305	59.266			1.1376	1.1971	12.53	4	0	Median	1.6538	1.4501	NaN	1	0	Median	0.91986	1.0846	NaN	1	0	Median	1.1913	1.2424	NaN	1	0	Median	1.0864	1.1535	NaN	1	0	Median	84132000	38251000	45881000	17531000	6406500	11125000	17689000	9382200	8307200	22471000	10492000	11978000	26440000	11970000	14471000	42674	5376	40172	259889;259890;259891;259892	348551;348552;348553;348554	348553			4	
QVDQLTNDK	1	Unmodified	1059.5197	0.51965261	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	2	1	1	16.445	13.294	2	0.00025171	11399	160511_QHF_FH_JSI10i_1	97.965	75.834			1.2604	1.8888	69.461	5	4	Linear	3.324	2.7048	NaN	1	1	Median	0.73806	0.86818	74.821	2	2	Median	1.2632	1.2301	NaN	1	1	Median	0.51956	0.56697	NaN	1	0	Median	924000000	444410000	479590000	302480000	112760000	189720000	351910000	192920000	158980000	262700000	134410000	128290000	6910600	4313200	2597500	42675	913	40173	259893;259894;259895;259896;259897	348555;348556;348557;348558;348559	348556			5	
QVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSK	1	Unmodified	4106.2528	0.25281423	1339	P30049	ATP5D	ATP synthase subunit delta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.091	88.673	4;5	3.5443E-143	50091	160513_QHF_FH_JSI11Kac_6	238.74	221.84			0.94192	0.91272	8.9421	8	0	Median	1.0438	0.89567	5.2174	2	0	Median	0.72966	0.87012	5.6756	2	0	Median	0.9812	0.93418	13.77	2	0	Median	0.94814	0.99232	10.74	2	0	Median	7166200000	3753200000	3413000000	2396100000	1188600000	1207500000	2573200000	1454400000	1118900000	1264200000	639530000	624670000	932640000	470630000	462010000	42676	1339	40174	259898;259899;259900;259901;259902;259903;259904;259905	348560;348561;348562;348563;348564;348565;348566;348567;348568;348569;348570;348571;348572	348562			13	
QVEDDIQQLLK	1	Unmodified	1327.6983	0.69834526	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.722	69.173	2	1.8099E-11	62969	160511_QHF_FH_JSI12i_1	198.25	155.17			0.86778	0.8917	8.2187	4	1	Median	1.2488	1.03	NaN	1	0	Median	0.72755	0.86062	NaN	1	0	Median	0.92448	0.91351	NaN	1	0	Median	0.81455	0.87042	NaN	1	1	Median	1394800000	738240000	656560000	319080000	148470000	170610000	405430000	222940000	182480000	410170000	212400000	197770000	260130000	154430000	105700000	42677	1449	40175	259906;259907;259908;259909	348573;348574;348575;348576	348574			4	
QVEDLNVK	1	Unmodified	943.49746	0.4974606	501	O75330	HMMR	Hyaluronan mediated motility receptor	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	70.738	70.144	2	0.0094658	64011	160511_QHF_FH_JSI12i_1	56.011	10.293			0.65036	0.64108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65036	0.64108	NaN	1	0	Median	12055000	7173800	4881200	0	0	0	0	0	0	0	0	0	12055000	7173800	4881200	42678	501	40176	259910	348577	348577			1	
QVEEALHQLHAR	0	Unmodified	1429.7426	0.74261011	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							2		1	1	26.665	26.141	3	3.3688E-05	22062	160511_QHF_FH_JSI11i_3	117.07	99.871			0.56423	0.50868	101.13	4	2	Median	1.4613	1.2531	115.74	2	1	Median	NaN	NaN	NaN	0	0	Median	0.49183	0.46812	NaN	1	1	Median	0.26559	0.27149	NaN	1	0	Median	394400000	233060000	161340000	198080000	94608000	103470000	0	0	0	128150000	84187000	43962000	68173000	54265000	13909000	42679	111	40177	259911;259912;259913;259914	348578;348579;348580	348578			3	
QVEEAMLAVLHTVLLHR	0	Unmodified	1958.0772	0.077151469	4392	Q9BSB4	ATG101	Autophagy-related protein 101	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				93.218	84.361	4	2.7499E-12	47516	160513_QHF_FH_JSI9Kac_6	131.48	116.33			0.85416	0.72302	NaN	1	0	Median	0.85416	0.72302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41484000	26492000	14992000	41484000	26492000	14992000	0	0	0	0	0	0	0	0	0	42680	4392	40178	259915	348581	348581			1	
QVEEEILALK	1	Unmodified	1170.6496	0.64960415	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		61.447	60.687	2	0.0013043	53894	160511_QHF_FH_JSI9i_1	77.662	43.41			0.32767	0.29437	24.614	2	2	Median	0.30065	0.24735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35712	0.35034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	297060000	234510000	62555000	111380000	92332000	19047000	0	0	0	185680000	142170000	43508000	0	0	0	42681	2636	40179	259916;259917	348582;348583	348583			2	
QVEEIFNLK	1	Unmodified	1118.5972	0.59717465	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	62.316	61.547	2	1.3024E-06	52786	160511_QHF_FH_JSI12i_2	133.23	31.693			0.85235	0.96072	30.063	5	1	Median	0.89636	0.70609	NaN	1	0	Median	0.79996	0.97569	NaN	1	0	Median	0.56602	0.55268	NaN	1	1	Median	0.97931	1.065	14.575	2	0	Median	327530000	159130000	168400000	26021000	13134000	12887000	66135000	30776000	35360000	54100000	29566000	24534000	181270000	85653000	95620000	42682	2087	40180	259918;259919;259920;259921;259922	348584;348585;348586;348587;348588	348586			5	
QVEELFER	0	Unmodified	1048.5189	0.51892433	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.021	42.052	2	0.0021103	36162	160511_QHF_FH_JSI11i_2	82.563	56.34			0.87183	0.95658	18.808	4	0	Median	1.0899	0.96907	NaN	1	0	Median	0.77526	0.94426	NaN	1	0	Median	0.70676	0.71067	NaN	1	0	Median	0.98043	1.1126	NaN	1	0	Median	249080000	145630000	103450000	48353000	24261000	24092000	43572000	26794000	16779000	108490000	69241000	39247000	48662000	25330000	23332000	42683	2087	40181	259923;259924;259925;259926	348589;348590;348591	348591			3	
QVEELFERK	1	Unmodified	1176.6139	0.61388734	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.096	33.002	2	0.019879	27850	160511_QHF_FH_JSI12i_3	58.981	39.194			0.84524	0.84537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84524	0.84537	NaN	1	1	Median	42327000	27011000	15316000	0	0	0	0	0	0	0	0	0	42327000	27011000	15316000	42684	2087	40182	259927	348592	348592			1	
QVEELLMAMEK	1	Unmodified	1319.6465	0.64650938	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	77.326	76.595	2	0.00094957	68357	160511_QHF_FH_JSI10i_2	71.896	54.428			0.84136	0.98993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84136	0.98993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16428000	8585200	7842600	0	0	0	16428000	8585200	7842600	0	0	0	0	0	0	42685	3395	40183	259928;259929;259930;259931;259932	348593;348594;348595;348596;348597	348597			5	
QVEELQQR	0	Unmodified	1028.5251	0.52507234	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.571	13.134	2	0.00061315	10474	160511_QHF_FH_JSI9i_1	102.46	34.384			0.65935	0.62638	63.002	4	3	Median	0.83714	0.69916	NaN	1	0	Median	0.72639	0.84329	NaN	1	1	Median	0.5985	0.56119	NaN	1	1	Median	0.20156	0.20516	NaN	1	1	Median	333110000	215530000	117590000	78187000	43000000	35187000	70732000	36869000	33862000	71280000	40738000	30541000	112910000	94919000	17995000	42686	4378	40184	259933;259934;259935;259936	348598;348599;348600;348601	348601			4	
QVEELYHSLLELGEK	1	Unmodified	1785.9149	0.91487997	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.586	86.824	3	0.0020805	75033	160511_QHF_FH_JSI12i_2	58.079	52.174			0.61406	0.63838	0.21965	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62436	0.63937	NaN	1	1	Median	0.60392	0.63739	NaN	1	1	Median	51751000	27496000	24254000	0	0	0	0	0	0	34572000	18027000	16545000	17179000	9469000	7709800	42687	2470	40185	259937;259938	348602;348603	348602			2	
QVEHPLLSGLLYPGLQALDEEYLK	1	Unmodified	2724.4374	0.43743311	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.83	101.84	3	1.4505E-16	90914	160511_QHF_FH_JSI11i_3	122.41	115.68			0.99643	0.97196	31.754	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83928	0.77649	NaN	1	0	Median	1.183	1.2166	NaN	1	0	Median	721450000	350050000	371410000	0	0	0	0	0	0	337920000	176210000	161710000	383530000	173840000	209690000	42688	1823	40186	259939;259940	348604;348605;348606	348605			3	
QVEIAQR	0	Unmodified	842.46102	0.46101552	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6	4	4	5				3	4		4	6	5	5	14.861	11.277	2	5.6712E-05	7550	160513_QHF_FH_JSI12Kac_4	125.25	17.823			0.96671	1.0055	14.344	19	1	Median	1.5599	1.263	11.913	4	0	Linear	1.114	1.3538	19.619	5	1	Linear	0.96671	0.91815	6.6749	5	0	Median	0.95187	0.93982	6.4168	5	0	Linear	12894000000	6374300000	6519400000	2488200000	927930000	1560300000	3427600000	1903200000	1524400000	3857100000	1954800000	1902300000	3120800000	1588400000	1532400000	42689	779	40187	259941;259942;259943;259944;259945;259946;259947;259948;259949;259950;259951;259952;259953;259954;259955;259956;259957;259958;259959;259960	348607;348608;348609;348610;348611;348612;348613;348614;348615;348616;348617;348618;348619;348620;348621;348622;348623;348624;348625;348626;348627;348628;348629;348630;348631;348632;348633;348634	348628			28	
QVEIAQREGAK	1	Unmodified	1227.6571	0.65714914	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	11.682	11.449	3	0.037012	9290	160511_QHF_FH_JSI10i_2	34.241	19.365			0.25736	0.28434	24.333	2	2	Median	NaN	NaN	NaN	0	0	Median	0.19886	0.2394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33306	0.33773	NaN	1	1	Median	119200000	87737000	31465000	0	0	0	56197000	43765000	12433000	0	0	0	63004000	43972000	19032000	42690	779	40188	259961;259962	348635;348636	348635			2	
QVEILNR	0	Unmodified	870.49232	0.49231565	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	28.211	27.377	2	0.012815	23023	160511_QHF_FH_JSI11i_2	68.787	4.5223			1.3783	1.4835	1.6202	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4915	1.5006	NaN	1	0	Median	1.2737	1.4666	NaN	1	0	Median	143050000	70486000	72560000	0	0	0	0	0	0	88754000	46495000	42258000	54292000	23990000	30302000	42691	862	40189	259963;259964	348637	348637			1	
QVEILNRYPHFK	1	Unmodified	1542.8307	0.83069683	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.458	48.458	4	0.00012676	42830	160511_QHF_FH_JSI11i_3	84.289	71.153			0.99341	0.91639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99341	0.91639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28577000	15128000	13449000	0	0	0	0	0	0	28577000	15128000	13449000	0	0	0	42692	862	40190	259965	348638	348638			1	
QVELALWDTAGQEDYDR	0	Unmodified	2007.9174	0.91739917	1957;892;2016	P61586;P08134;P62745	RHOA;RHOC;RHOB	Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	79.651	79.179	2;3	1.7196E-07	70583	160511_QHF_FH_JSI9i_1	124.07	109.19			0.58315	0.62395	26.268	4	3	Median	0.86116	0.70354	NaN	1	1	Median	0.48419	0.55337	NaN	1	0	Median	0.4166	0.41305	NaN	1	1	Median	0.70234	0.72949	NaN	1	1	Median	235040000	153680000	81360000	17325000	11349000	5976100	35549000	20898000	14651000	102550000	74611000	27939000	79611000	46817000	32794000	42693	1957;892;2016	40191	259966;259967;259968;259969;259970	348639;348640;348641;348642;348643;348644	348643			6	
QVENAGAIGPSR	0	Unmodified	1197.6102	0.61019895	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	1	2	21.201	17.985	2	1.5536E-11	15903	160511_QHF_FH_JSI12i_1	167.18	125.53			1.0157	1.0451	10.033	6	0	Median	1.1012	0.89542	NaN	1	0	Median	0.88019	1.0342	8.8215	2	0	Median	1.005	0.99233	NaN	1	0	Median	1.0769	1.1371	4.5648	2	0	Median	843200000	378680000	464520000	182650000	78370000	104280000	235910000	116870000	119040000	227470000	99549000	127920000	197170000	83898000	113270000	42694	5298	40192	259971;259972;259973;259974;259975;259976	348645;348646;348647;348648;348649;348650;348651;348652;348653;348654	348648			10	
QVEPLDPPAGSAPGEHVFVK	1	Unmodified	2073.0531	0.053104788	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.77	2	5	3					1		2	2	4	3	60.914	59.149	2;3	2.4925E-15	51486	160511_QHF_FH_JSI11i_2	154.34	138.39			0.9744	1.0407	18.779	10	1	Median	1.2652	1.049	2.3832	2	0	Median	0.6588	0.79375	43.091	2	0	Median	1.031	1.0057	6.2998	3	0	Plateau	0.94595	1.05	10.441	3	1	Median	1815100000	876190000	938890000	329440000	141000000	188430000	455710000	238800000	216910000	540130000	262330000	277800000	489800000	234060000	255740000	42695	1823	40193	259977;259978;259979;259980;259981;259982;259983;259984;259985;259986;259987	348655;348656;348657;348658;348659;348660;348661;348662;348663;348664;348665;348666;348667;348668;348669;348670;348671;348672;348673;348674;348675;348676;348677	348668			23	
QVEPPAK	1	Unmodified	767.41775	0.41775372	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	11.52	7.7009	2	0.0084038	7305	160511_QHF_FH_JSI9i_1	83.614	58.616			0.97455	1.0207	4.734	8	0	Median	1.2747	1.0147	NaN	1	0	Median	0.91395	1.084	0.12601	2	0	Median	1.0413	1.0147	7.3153	3	0	Median	0.94084	1.0195	1.0184	2	0	Median	3543000000	1705600000	1837400000	968180000	414780000	553410000	905000000	474790000	430210000	777690000	360230000	417460000	892170000	455850000	436310000	42696	1327	40194	259988;259989;259990;259991;259992;259993;259994;259995	348678;348679;348680;348681;348682;348683;348684;348685;348686;348687;348688	348687			11	
QVEQLEK	1	Unmodified	872.46035	0.46034682	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	12.963	12.407	2	0.0050784	9822	160511_QHF_FH_JSI9i_1	108.46	24.846			0.68373	0.67189	74.906	5	5	Median	1.1635	0.97234	98.041	2	2	Median	NaN	NaN	NaN	0	0	Median	0.68373	0.67189	NaN	1	1	Median	0.69337	0.73917	107.92	2	2	Median	1729200000	884990000	844240000	693750000	326160000	367600000	0	0	0	395270000	197920000	197350000	640200000	360910000	279290000	42697	2502	40195	259996;259997;259998;259999;260000	348689;348690;348691;348692;348693	348693			5	
QVETELFPCLR	0	Unmodified	1390.6915	0.69148574	338	O43488;Q8NHP1;O95154	AKR7A2;AKR7L;AKR7A3	Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4;Aflatoxin B1 aldehyde reductase member 3	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.449	71.496	2	0.00019551	61732	160511_QHF_FH_JSI12i_2	81.338	28.214			0.95873	1.0132	12.726	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9246	0.92596	NaN	1	0	Median	0.99413	1.1086	NaN	1	0	Median	219940000	103010000	116930000	0	0	0	0	0	0	121110000	59052000	62061000	98824000	43959000	54865000	42698	338	40196	260001;260002	348694;348695;348696	348694			3	
QVEVINFGDCLVR	0	Unmodified	1547.7766	0.77661235	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.467	78.289	2	3.8862E-07	67658	160511_QHF_FH_JSI12i_2	96.229	65.666			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42699	1578	40197	260003	348697	348697			1	
QVEYLVNEK	1	Unmodified	1120.5764	0.57643921	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	5.63	1						3				1	2	1	40.327	33.561	2	0.00011828	19676	160513_QHF_FH_JSI12Kac_4	99.139	60.176			0.65569	0.64549	19.197	3	3	Median	NaN	NaN	NaN	0	0	Median	0.55252	0.64549	NaN	1	1	Median	0.65569	0.6292	NaN	1	1	Median	0.82675	0.88802	NaN	1	1	Median	316710000	165190000	151520000	0	0	0	3087700	1582900	1504800	308830000	161410000	147420000	4787900	2194700	2593200	42700	1111	40198	260004;260005;260006;260007	348698;348699;348700;348701	348701			4	
QVFAQKLHK	2	Acetyl (K)	1139.6451	0.64512789	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.206	30.663	3	0.00097148	16937	160513_QHF_FH_JSI11Kac_6	72.607	72.607			0.26026	0.26258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26026	0.26258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4700000	3796000	903950	0	0	0	0	0	0	4700000	3796000	903950	0	0	0	42701	4988	40199	260008	348702	348702	3288		1	
QVFDQYVK	1	Unmodified	1025.5182	0.51819605	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.14	5.94	3	2					1	1			3	3	1	40.837	37.037	2	0.0031596	33341	160511_QHF_FH_JSI10i_1	73.665	57.125			0.91143	0.8888	26.407	6	0	Median	NaN	NaN	NaN	0	0	Median	0.80663	0.96604	43.932	2	0	Median	0.87206	0.84497	11.551	3	0	Median	1.2029	1.2628	NaN	1	0	Median	306100000	162570000	143530000	0	0	0	41921000	24289000	17631000	186160000	101190000	84974000	78014000	37094000	40920000	42702	203	40200	260009;260010;260011;260012;260013;260014;260015	348703;348704;348705;348706;348707;348708	348705			6	
QVFEGQNR	0	Unmodified	976.47264	0.47264284	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	11.779	9.859	2	8.4367E-07	7992	160511_QHF_FH_JSI11i_2	151.29	69.911			1.0143	1.0861	4.0223	5	0	Median	1.2601	1.0814	NaN	1	0	Median	0.89823	1.0861	NaN	1	0	Median	1.0936	1.0887	7.6016	2	0	Median	0.98784	1.1179	NaN	1	0	Median	1078000000	538990000	538990000	259650000	121210000	138440000	229060000	115050000	114010000	328020000	157760000	170260000	261260000	144970000	116280000	42703	1648	40201	260016;260017;260018;260019;260020	348709;348710;348711;348712;348713;348714;348715	348713			7	
QVFFELNGQLR	0	Unmodified	1349.7092	0.70918471	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			74.416	73.655	2	0.00046645	65515	160511_QHF_FH_JSI10i_2	86.624	58.226			0.65925	0.8189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65925	0.8189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19340000	14393000	4947600	0	0	0	19340000	14393000	4947600	0	0	0	0	0	0	42704	1002	40202	260021	348716	348716			1	
QVFGEATK	1	Unmodified	878.44978	0.44978213	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.619	16.147	2	0.014291	13623	160511_QHF_FH_JSI10i_1	58.23	28.388			0.83144	0.84728	10.271	4	0	Median	1.0919	0.90088	NaN	1	0	Median	0.84668	0.96622	NaN	1	0	Median	0.81648	0.79687	NaN	1	0	Median	0.76006	0.7775	NaN	1	0	Median	371090000	195040000	176050000	53449000	25085000	28364000	119550000	64340000	55214000	109780000	53799000	55982000	88306000	51813000	36493000	42705	869	40203	260022;260023;260024;260025	348717	348717			1	
QVFGHLEFLSGEK	1	Unmodified	1489.7565	0.75652884	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	65.621	65.474	2;3	4.88E-05	56536	160511_QHF_FH_JSI12i_3	112.13	81.871			0.89531	0.87469	7.0198	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97978	0.91878	0.13667	2	1	Median	0.81611	0.81649	2.917	2	0	Median	209280000	110060000	99227000	0	0	0	0	0	0	87515000	40421000	47095000	121770000	69635000	52132000	42706	2784	40204	260026;260027;260028;260029	348718;348719;348720;348721	348720			3	
QVFGHNVIPPK	1	Unmodified	1234.6822	0.68224168	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								2		1	36.667	35.648	3	0.052858	29468	160511_QHF_FH_JSI10i_3	24.51	15.997			0.51383	0.53731	23.848	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.61669	0.71369	24.498	2	2	Median	NaN	NaN	NaN	0	0	Median	0.51383	0.53731	NaN	1	1	Median	61366000	39441000	21925000	0	0	0	23408000	15883000	7524900	0	0	0	37958000	23558000	14400000	42707	1239	40205	260030;260031;260032	348722;348723;348724	348722			3	
QVFGQTTIHQHIPFNWDSEFVQLHFGK	1	Unmodified	3239.5941	0.59410196	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.834	79.167	5	3.9468E-84	44253	160513_QHF_FH_JSI10Kac_6	209.16	198.65			0.62986	0.74873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62986	0.74873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214800000	134960000	79838000	0	0	0	214800000	134960000	79838000	0	0	0	0	0	0	42708	5345	40206	260033	348725	348725			1	
QVFGTHTTQK	1	Unmodified	1145.5829	0.58292157	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	9.6586	9.7236	2;3	5.9728E-06	7075	160511_QHF_FH_JSI12i_3	117.31	72.23			1.4953	1.5253	78.897	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9551	1.8663	NaN	1	1	Median	0.80602	0.81461	88.701	2	1	Median	372840000	240590000	132250000	0	0	0	0	0	0	36491000	14426000	22065000	336350000	226160000	110190000	42709	2186	40207	260034;260035;260036	348726;348727;348728	348728			3	
QVFHELSQQTHGITR	0	Unmodified	1779.9016	0.90162994	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				35.469	34.026	3	0.026108	27759	160511_QHF_FH_JSI9i_3	29.618	26.014			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42710	3812	40208	260037	348729	348729			1	
QVFLATWK	1	Unmodified	991.5491	0.54910224	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.24		2	2				1	3	2	3	2	3	2	67.956	61.22	2	0.0008079	33457	160513_QHF_FH_JSI10Kac_6	105.25	70.048			0.85934	0.85695	67.774	8	3	Median	1.4576	1.1842	NaN	1	0	Median	0.31247	0.36593	117.53	2	1	Median	0.85018	0.8437	1.8274	3	1	Plateau	1.0711	1.1865	37.141	2	1	Median	781550000	486200000	295350000	5422000	2461200	2960900	395110000	290740000	104370000	232830000	122290000	110530000	148200000	70703000	77492000	42711	2046	40209	260038;260039;260040;260041;260042;260043;260044;260045;260046;260047	348730;348731;348732;348733;348734;348735;348736;348737;348738;348739;348740;348741	348741			12	
QVFQQTISCPEGLR	0	Unmodified	1661.8195	0.8195398	2552	Q14653	IRF3	Interferon regulatory factor 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.23	53.282	2	2.8129E-07	46163	160511_QHF_FH_JSI11i_2	91.937	47.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42712	2552	40210	260048;260049	348742;348743	348743			2	
QVFQSLPK	1	Unmodified	945.52837	0.5283668	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			37.343	36.38	2	0.0078956	32012	160511_QHF_FH_JSI10i_2	58.119	39.337			0.80558	1.0009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80558	1.0009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60405000	28824000	31581000	0	0	0	60405000	28824000	31581000	0	0	0	0	0	0	42713	4023	40211	260050	348744	348744			1	
QVFTNAEVYNCR	0	Unmodified	1499.6827	0.68271197	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.522	39.608	2	3.9144E-05	34000	160511_QHF_FH_JSI11i_2	103.26	85.391			1.0011	1.0682	19.261	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89635	0.93219	NaN	1	0	Median	1.118	1.2241	NaN	1	0	Median	41963000	21919000	20044000	0	0	0	0	0	0	22619000	13727000	8892500	19343000	8191800	11152000	42714	5330	40212	260051;260052	348745;348746;348747;348748	348748			4	
QVGDIFSNPETVLAK	1	Unmodified	1616.841	0.84098675	141	O00471	EXOC5	Exocyst complex component 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	80.221	79.789	2	0.00065986	72645	160511_QHF_FH_JSI11i_1	87.216	69.08			0.63949	0.62408	4.9343	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67121	0.64624	NaN	1	1	Median	0.60927	0.60268	NaN	1	1	Median	35058000	23137000	11921000	0	0	0	0	0	0	19963000	12923000	7040300	15094000	10214000	4880700	42715	141	40213	260053;260054	348749;348750	348749			2	
QVGLMVQER	0	Unmodified	1058.5543	0.55426398	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	34.33	33.711	2	4.8564E-06	28597	160511_QHF_FH_JSI11i_2	117.81	86.507			0.84378	1.3078	25.118	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84378	0.85268	NaN	1	0	Median	1.2163	1.3172	1.0138	2	0	Median	390260000	212040000	178220000	0	0	0	0	0	0	300550000	165700000	134850000	89713000	46341000	43372000	42716	1659	40214	260055;260056;260057	348751;348752;348753	348751			3	
QVGSYKK	2	Unmodified	808.4443	0.44430282	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	5.2075	4.9873	2;3	0.0043968	2837	160511_QHF_FH_JSI10i_3	60.76	25.936			1.08	0.99211	18.561	4	0	Median	1.1788	0.92672	NaN	1	0	Median	0.93293	1.0621	NaN	1	0	Median	0.9895	0.92097	NaN	1	0	Median	1.3703	1.3694	NaN	1	0	Median	5143100000	1293100000	3849900000	1026500000	235110000	791440000	1256000000	358840000	897110000	1170000000	361270000	808710000	1690600000	337880000	1352700000	42717	2324	40215	260058;260059;260060;260061;260062;260063;260064;260065	348754;348755;348756;348757;348758;348759;348760;348761;348762;348763;348764	348758			11	
QVGVGYVDSIQR	0	Unmodified	1319.6834	0.68336389	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		46.127	45.348	2	0.00043975	39547	160511_QHF_FH_JSI9i_2	87.184	63.756			1.0864	1.011	33.443	2	2	Median	1.4892	1.2807	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7925	0.79811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	164730000	82458000	82270000	55872000	21532000	34340000	0	0	0	108860000	60926000	47930000	0	0	0	42718	1557	40216	260066;260067	348765;348766;348767	348766			3	
QVGVGYVDSIQRK	1	Unmodified	1447.7783	0.77832691	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	38.309	37.927	3	0.020672	33146	160511_QHF_FH_JSI11i_3	36.392	22.964			1.9881	1.953	72.969	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.112	1.3605	NaN	1	1	Median	2.1492	1.953	NaN	1	1	Median	0.45214	0.47908	NaN	1	1	Median	128270000	63507000	64759000	0	0	0	58422000	33344000	25078000	48701000	16162000	32539000	21143000	14001000	7142600	42719	1557	40217	260068;260069;260070	348768;348769;348770	348768			3	
QVGVVGK	1	Unmodified	685.41227	0.41227441	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.962	11.708	2	0.013926	9489	160511_QHF_FH_JSI10i_1	67.035	18.861			0.91571	1.077	15.594	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91571	1.077	NaN	1	0	Median	0.87182	0.86469	NaN	1	0	Median	0.77289	0.79662	NaN	1	0	Median	319290000	157390000	161890000	0	0	0	113870000	59234000	54633000	103130000	53177000	49949000	102290000	44983000	57309000	42720	1194	40218	260071;260072;260073	348771;348772;348773	348773			3	
QVGYEDQWLQLLR	0	Unmodified	1646.8417	0.84165545	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	98.689	98.505	2	0.00012256	84669	160511_QHF_FH_JSI12i_2	87.568	65.37			1.0456	1.0636	6.6832	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80158	0.98418	NaN	1	1	Median	1.0456	1.0636	NaN	1	0	Median	1.0303	1.1242	NaN	1	0	Median	147860000	76938000	70926000	0	0	0	33496000	18235000	15261000	75494000	37655000	37839000	38875000	21048000	17826000	42721	430	40219	260074;260075;260076	348774;348775;348776;348777	348775			4	
QVGYENAGTVEFLVDR	0	Unmodified	1795.8741	0.87407779	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	73.773	73.411	2	3.0531E-07	66436	160511_QHF_FH_JSI10i_1	153.39	129.72			0.88061	1.0845	12.763	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.87995	1.0491	NaN	1	1	Median	0.88061	0.85671	NaN	1	1	Median	1.0481	1.0845	NaN	1	0	Median	143730000	74341000	69393000	0	0	0	67796000	36083000	31713000	34280000	18176000	16104000	41658000	20083000	21575000	42722	1002	40220	260077;260078;260079;260080	348778;348779;348780;348781	348780			4	
QVHEVGLDGTETYLPPLSMSQNLAR	0	Unmodified	2754.3647	0.36467888	5027	Q9NVC6	MED17	Mediator of RNA polymerase II transcription subunit 17	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			86.213	85.629	3	0.056349	76132	160511_QHF_FH_JSI10i_2	13.248	9.9127			0.93703	1.2028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93703	1.2028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12509000	5803500	6705900	0	0	0	12509000	5803500	6705900	0	0	0	0	0	0	42723	5027	40221	260081	348782	348782			1	
QVHIGQLYSTDK	1	Unmodified	1387.7096	0.70957864	4872	Q9HD34	LYRM4	LYR motif-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								1	3	4	37	36.451	2;3	4.2205E-05	30686	160511_QHF_FH_JSI12i_3	101.93	84.12			0.88649	0.87873	54.154	8	6	Median	NaN	NaN	NaN	0	0	Median	0.62208	0.76254	NaN	1	1	Median	0.86378	0.79847	91.699	3	3	Median	1.0942	1.1398	28.282	4	2	Median	372420000	173110000	199310000	0	0	0	18858000	11782000	7076400	148610000	61451000	87162000	204950000	99881000	105070000	42724	4872	40222	260082;260083;260084;260085;260086;260087;260088;260089	348783;348784;348785;348786;348787;348788;348789;348790;348791	348789			9	
QVHLVSPLTTYMVPKPEEINLLTGESDTQQIEAEK	2	Unmodified	3937.003	0.0030496376	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	100.76	100.73	4	1.2088E-131	89736	160511_QHF_FH_JSI11i_3	265.05	256.79			0.92324	0.86829	16.86	4	0	Median	1.0342	0.8865	NaN	1	0	Median	0.97853	1.1732	NaN	1	0	Median	0.87106	0.85045	NaN	1	0	Median	0.80836	0.80267	NaN	1	0	Median	998730000	529800000	468930000	114410000	56919000	57493000	118890000	57197000	61692000	541150000	288240000	252910000	224280000	127450000	96834000	42725	4153	40223	260090;260091;260092;260093	348792;348793;348794;348795;348796;348797;348798;348799	348793			8	
QVHLVSPLTTYMVPKPEEINLLTGESDTQQIEAEK	2	Oxidation (M)	3952.998	0.99796426	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		95.721	95.721	4	9.2085E-05	85203	160511_QHF_FH_JSI11i_3	37.579	33.466			0.83986	0.77976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83986	0.77976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16157000	11484000	4673500	0	0	0	0	0	0	16157000	11484000	4673500	0	0	0	42726	4153	40223	260094	348800	348800		2402	1	
QVHNSFAR	0	Unmodified	957.47806	0.47806257	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			7.6479	7.1271	2	0.023633	5084	160511_QHF_FH_JSI10i_3	43.083	0.036336			2.3927	2.7852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3927	2.7852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121120000	42278000	78842000	0	0	0	121120000	42278000	78842000	0	0	0	0	0	0	42727	5663	40224	260095	348801	348801			1	
QVHPDTGISSK	1	Unmodified	1167.5884	0.58840088	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.27	5	8	8				4	8	2	7	9	9	10	12.963	9.1977	2;3	7.0056E-14	8023	160511_QHF_FH_JSI12i_2	127.87	115.7			1.0186	1.0066	33.075	33	3	Median	1.0186	0.83748	12.03	7	0	Median	1.2319	1.4644	13.586	8	1	Median	0.97793	0.96375	40.057	9	2	Median	0.9355	1.0066	26.229	9	0	Median	8631700000	4394900000	4236800000	1564600000	802510000	762080000	1933300000	889140000	1044200000	3006200000	1527700000	1478500000	2127600000	1175600000	952040000	42728	1235;1902;2915	40225	260096;260097;260098;260099;260100;260101;260102;260103;260104;260105;260106;260107;260108;260109;260110;260111;260112;260113;260114;260115;260116;260117;260118;260119;260120;260121;260122;260123;260124;260125;260126;260127;260128;260129;260130	348802;348803;348804;348805;348806;348807;348808;348809;348810;348811;348812;348813;348814;348815;348816;348817;348818;348819;348820;348821;348822;348823;348824;348825;348826;348827;348828;348829;348830;348831;348832;348833;348834;348835;348836;348837;348838;348839;348840;348841;348842;348843;348844;348845;348846;348847;348848;348849	348808			48	
QVHPFHVYPQPGMQR	0	Unmodified	1819.894	0.89404215	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				42.33	40.77	3	0.005887	33339	160511_QHF_FH_JSI9i_3	43.813	34.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42729	732	40226	260131	348850	348850			1	
QVIDVLETDK	1	Unmodified	1158.6132	0.61321864	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.678	51.005	2	2.2732E-05	45258	160511_QHF_FH_JSI9i_1	113.44	83.26			1.0276	1.0387	8.9448	4	0	Median	1.1104	0.90599	NaN	1	0	Median	0.93399	1.118	NaN	1	0	Median	1.0824	1.061	NaN	1	0	Median	0.97567	1.0169	NaN	1	0	Median	507980000	254570000	253410000	131580000	57648000	73928000	129090000	80218000	48874000	127520000	68174000	59349000	119790000	48527000	71258000	42730	2100	40227	260132;260133;260134;260135	348851;348852;348853;348854	348854			4	
QVIDVLETDKHFR	1	Acetyl (K)	1640.8522	0.85222014	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.715	63.332	3	0.0066158	34345	160513_QHF_FH_JSI11Kac_6	47.532	27.927			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42731	2100	40228	260136	348855	348855	2208		1	
QVIEYAR	0	Unmodified	877.46577	0.46576654	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	20.548	19.885	2	0.0070404	16395	160511_QHF_FH_JSI12i_2	88.904	30.658			0.88907	0.98755	9.7329	5	0	Median	1.2648	1.1137	NaN	1	0	Median	0.76013	0.92642	NaN	1	0	Median	1.0002	0.99491	14.233	2	0	Median	0.88015	0.98755	NaN	1	0	Median	666280000	333890000	332390000	127440000	45004000	82437000	123390000	72581000	50804000	267090000	124730000	142360000	148360000	91575000	56787000	42732	1627	40229	260137;260138;260139;260140;260141	348856;348857;348858;348859;348860;348861	348856			6	
QVIFSAEQTYELMR	0	Unmodified	1713.8396	0.83960654	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		3								2	1			80.087	79.386	2	0.0008525	70078	160511_QHF_FH_JSI9i_2	85.813	65.035			1.1383	1.1164	7.4572	3	2	Plateau	1.2076	1.0365	8.6288	2	2	Median	0.91315	1.1164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72972000	39190000	33782000	40752000	18536000	22217000	32220000	20654000	11566000	0	0	0	0	0	0	42733	4487	40230	260142;260143;260144	348862;348863;348864	348863			3	
QVIINLINQK	1	Unmodified	1181.7132	0.71320746	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.85		3	5					4		3	3	3	3	67.485	63.324	2	1.067E-14	54519	160511_QHF_FH_JSI12i_3	167.24	47.951			1.186	1.0696	49.501	12	7	Median	2.2405	1.856	46.734	3	2	Plateau	0.82694	0.97993	38.245	3	2	Median	1.2761	1.2174	12.352	3	1	Median	0.68289	0.72856	75.113	3	2	Median	322610000	168310000	154300000	42393000	19582000	22812000	32164000	17888000	14276000	115020000	54578000	60444000	133030000	76260000	56773000	42734	4991	40231	260145;260146;260147;260148;260149;260150;260151;260152;260153;260154;260155;260156	348865;348866;348867;348868;348869;348870;348871;348872;348873;348874;348875	348875			11	
QVIIQGFR	0	Unmodified	959.55525	0.55525025	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	55.499	46.118	2	0.0060434	25016	160513_QHF_FH_JSI11Kac_6	76.035	56.675			0.73397	0.73275	4.6233	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.62054	0.72234	NaN	1	0	Median	0.77399	0.75983	NaN	1	0	Median	0.73397	0.79221	NaN	1	0	Median	37552000	21108000	16444000	0	0	0	16227000	8916500	7310200	13737000	7709500	6027300	7588800	4482100	3106700	42735	5479	40232	260157;260158;260159	348876;348877;348878	348876			3	
QVISLQTK	1	Unmodified	915.53893	0.53893149	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.372	29.458	2	0.0086053	24825	160511_QHF_FH_JSI11i_2	56.81	22.807			0.8482	0.86859	18.379	4	0	Median	0.87615	0.74565	NaN	1	0	Median	0.82115	1.0044	NaN	1	0	Median	0.73419	0.75117	NaN	1	0	Median	0.95511	1.0506	NaN	1	0	Median	254600000	130730000	123860000	60389000	28510000	31880000	38628000	18774000	19854000	95484000	50297000	45187000	60094000	33153000	26941000	42736	1778	40233	260160;260161;260162;260163	348879;348880	348880			2	
QVISTLPIFHK	1	Unmodified	1281.7445	0.74450759	1389	P32019	INPP5B	Type II inositol 1,4,5-trisphosphate 5-phosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.253	65.106	3	0.0028142	56342	160511_QHF_FH_JSI12i_3	54.259	41.991			1.6453	1.5936	68.309	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0373	0.98313	NaN	1	0	Median	2.6097	2.5832	NaN	1	1	Median	54807000	17739000	37067000	0	0	0	0	0	0	24567000	9978700	14588000	30240000	7760600	22479000	42737	1389	40234	260164;260165	348881;348882	348882			1	
QVITLLNELK	1	Unmodified	1169.702	0.70197407	923	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.684	78.881	2	7.378E-05	68255	160511_QHF_FH_JSI12i_2	88.496	53.227			0.78324	0.81872	40.406	4	2	Median	0.60385	0.5357	NaN	1	1	Median	0.51926	0.62915	NaN	1	1	Median	1.0159	1.0654	NaN	1	0	Median	1.1294	1.2383	NaN	1	0	Median	105110000	61304000	43803000	15794000	9556500	6237700	20809000	13433000	7376700	37573000	19109000	18464000	30931000	19206000	11725000	42738	923	40235	260166;260167;260168;260169	348883;348884;348885;348886;348887	348884			5	
QVKHDQQVAR	1	Acetyl (K)	1249.6527	0.65273247	4025	Q96DE5	ANAPC16	Anaphase-promoting complex subunit 16	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.487							5	8		2	4	3	4	8.8853	-0.22642	2;3	1.2797E-06	3085	160513_QHF_FH_JSI12Kac_5	115.57	90.137			0.99309	1.011	16.972	13	0	Median	0.96909	0.81717	6.9181	2	0	Median	0.7548	0.8872	13.13	4	0	Median	1.0164	1.011	11.124	3	0	Median	1.0939	1.2068	11.345	4	0	Median	113880000	54181000	59703000	13634000	6160800	7472900	30351000	17368000	12983000	31068000	13203000	17865000	38831000	17450000	21381000	42739	4025	40236	260170;260171;260172;260173;260174;260175;260176;260177;260178;260179;260180;260181;260182	348888;348889;348890;348891;348892;348893;348894;348895;348896;348897;348898;348899;348900;348901;348902;348903;348904	348901	3033		16	
QVKPYVEEGLHPQIIIR	1	Unmodified	2018.1313	0.13129553	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	61.521	60.556	3;4	7.8395E-05	50814	160511_QHF_FH_JSI10i_3	72.417	56.475			1.2349	1.1914	38.942	5	2	Median	1.2349	1.0136	NaN	1	0	Median	0.97398	1.1042	11.805	2	0	Median	1.2958	1.1914	NaN	1	1	Median	2.5753	2.5802	NaN	1	1	Median	322490000	131470000	191010000	19903000	10288000	9615400	140060000	67944000	72114000	69420000	29047000	40373000	93105000	24195000	68910000	42740	4321	40237	260183;260184;260185;260186;260187	348905;348906;348907;348908;348909;348910	348907			6	
QVLDAVYYLHR	0	Unmodified	1375.7248	0.72483478	3392	Q8IU85	CAMK1D	Calcium/calmodulin-dependent protein kinase type 1D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	1	2	1	66.365	60.278	3	7.1408E-10	33008	160513_QHF_FH_JSI10Kac_6	98.898	85.464			0.96853	0.89668	19.557	6	4	Median	1.0308	0.88286	15.06	2	2	Median	0.6822	0.81872	NaN	1	0	Median	0.82369	0.81678	32.213	2	2	Median	1.0148	1.0967	NaN	1	0	Median	205230000	113800000	91429000	39954000	20551000	19403000	40923000	23785000	17138000	81407000	44735000	36672000	42946000	24731000	18215000	42741	3392	40238	260188;260189;260190;260191;260192;260193	348911;348912;348913;348914;348915;348916;348917	348916			6	
QVLDGNSNPYDIFLK	1	Unmodified	1721.8625	0.86245047	2769	Q16832	DDR2	Discoidin domain-containing receptor 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			85.464	85.324	2	0.0011836	77402	160511_QHF_FH_JSI10i_1	77.593	35.198			0.55375	0.62796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55375	0.62796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13597000	10332000	3265000	0	0	0	13597000	10332000	3265000	0	0	0	0	0	0	42742	2769	40239	260194	348918	348918			1	
QVLDLEDLVFTQGSHFMANK	1	Unmodified	2291.1256	0.1256178	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.38	101.3	3	5.5855E-139	88025	160511_QHF_FH_JSI12i_3	283.49	272.93			0.97452	1.0458	13.943	6	2	Median	1.3098	1.0997	NaN	1	1	Median	0.82804	1.0234	NaN	1	0	Median	0.96019	0.94665	16.68	2	1	Median	1.0831	1.154	16.51	2	0	Median	2558200000	1264600000	1293500000	233860000	87782000	146080000	358780000	194210000	164570000	847300000	440420000	406880000	1118300000	542240000	576020000	42743	552	40240	260195;260196;260197;260198;260199;260200	348919;348920;348921;348922;348923;348924;348925;348926	348926			8	
QVLDLEDLVFTQGSHFMANK	1	Oxidation (M)	2307.1205	0.12053243	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	97.967	97.987	3	4.349E-05	84917	160511_QHF_FH_JSI12i_3	57.537	53.099			1.4829	1.4791	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4829	1.4791	NaN	1	0	Median	53918000	25899000	28019000	0	0	0	0	0	0	0	0	0	53918000	25899000	28019000	42744	552	40240	260201	348927	348927		205	1	
QVLEHLLK	1	Unmodified	978.58622	0.58621603	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		38.618	37.909	3	0.0043998	33339	160511_QHF_FH_JSI10i_2	56.729	25.656			1.3264	1.4857	9.4721	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2842	1.5886	NaN	1	1	Median	1.3699	1.3895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47446000	22304000	25142000	0	0	0	19187000	9860000	9327300	28259000	12445000	15814000	0	0	0	42745	4102	40241	260202;260203	348928;348929	348929			2	
QVLELWDR	0	Unmodified	1057.5556	0.55564418	4687	Q9H330	TMEM245	Transmembrane protein 245	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61.807	61.295	2	0.008768	53317	160511_QHF_FH_JSI11i_2	56.659	29.529			1.5198	1.5914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5198	1.5914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37490000	16690000	20800000	0	0	0	0	0	0	37490000	16690000	20800000	0	0	0	42746	4687	40242	260204;260205	348930;348931	348931			2	
QVLEPSFR	0	Unmodified	974.51853	0.5185304	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.07	1	4	4				2	4		3	4	3	5	43.313	39.059	2	7.2536E-05	20974	160513_QHF_FH_JSI9Kac_5	127.46	44.79			0.97627	0.97148	11.245	14	0	Median	1.0344	0.86157	5.7026	3	0	Median	0.86192	0.99793	5.024	4	0	Median	0.97698	0.96381	2.1014	3	0	Median	1.0386	1.1188	16.497	4	0	Median	6793100000	3597400000	3195600000	1203200000	632980000	570180000	1304400000	694750000	609660000	2627600000	1433200000	1194400000	1657900000	836550000	821390000	42747	1284	40243	260206;260207;260208;260209;260210;260211;260212;260213;260214;260215;260216;260217;260218;260219;260220	348932;348933;348934;348935;348936;348937;348938;348939;348940;348941;348942;348943;348944;348945;348946;348947;348948;348949;348950;348951;348952;348953;348954;348955;348956	348941			25	
QVLFSADDRVK	1	Unmodified	1276.6776	0.67755023	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		36.354	36.354	3	0.011713	31809	160511_QHF_FH_JSI11i_3	46.358	37.951			1.0491	0.99383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0491	0.99383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56997000	27362000	29635000	0	0	0	0	0	0	56997000	27362000	29635000	0	0	0	42748	944	40244	260221	348957	348957			1	
QVLFTPATQAAR	0	Unmodified	1301.7092	0.70918471	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		46.067	45.226	2	3.2869E-05	38943	160511_QHF_FH_JSI11i_2	105.98	79.591			1.7496	1.5816	32.532	3	0	Median	1.7496	1.5816	NaN	1	0	Median	0.98828	1.2006	NaN	1	0	Median	2.2951	2.2956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	170280000	62160000	108120000	47594000	14229000	33365000	55138000	22038000	33100000	67548000	25893000	41655000	0	0	0	42749	2947	40245	260222;260223;260224	348958;348959;348960	348959			2	
QVLGHTLDVFK	1	Unmodified	1255.6925	0.69247202	745	O95985	TOP3B	DNA topoisomerase 3-beta-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.723	56.723	2	0.027467	50316	160511_QHF_FH_JSI11i_3	41.704	13.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42750	745	40246	260225	348961	348961			1	
QVLGQMVIDEELLGDGHSYSPR	0	Oxidation (M)	2458.1798	0.17983822	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	76.848	76.713	3	1.5029E-15	66799	160511_QHF_FH_JSI12i_3	129.84	122.03			1.2173	1.2318	29.214	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5016	1.3822	47.776	2	1	Median	1.2173	1.2318	12.048	2	0	Median	245780000	106890000	138890000	0	0	0	0	0	0	104030000	41536000	62495000	141750000	65350000	76398000	42751	1301	40247	260226;260227;260228;260229	348962;348963;348964;348965	348965		951	3	
QVLGQMVIDEELLGDGHSYSPR	0	Unmodified	2442.1849	0.1849236	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	2	1	2	85.731	85.297	3	3.9499E-47	74084	160511_QHF_FH_JSI12i_3	208.69	198.44			1.5904	1.6304	37.669	6	2	Median	1.8505	1.575	NaN	1	1	Median	1.008	1.2344	44.234	2	0	Median	2.621	2.6312	NaN	1	0	Median	1.5016	1.5681	36.296	2	1	Median	1294000000	569570000	724420000	157980000	58049000	99931000	304390000	165310000	139080000	197370000	61614000	135750000	634250000	284590000	349660000	42752	1301	40247	260230;260231;260232;260233;260234;260235;260236	348966;348967;348968;348969;348970;348971;348972	348971			6	
QVLIASHLPSYELR	0	Unmodified	1624.8937	0.89369102	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	1	4	1	66.483	64.318	2;3	8.6774E-05	57069	160511_QHF_FH_JSI10i_2	77.42	67.632			0.99085	1.0219	12.671	6	2	Median	1.5801	1.3159	NaN	1	0	Median	0.84387	1.0125	NaN	1	0	Median	1.0592	1.0314	8.4752	3	2	Median	0.8585	0.93416	NaN	1	0	Median	256430000	132550000	123880000	26465000	9438300	17027000	63379000	38303000	25076000	128920000	61649000	67274000	37661000	23159000	14501000	42753	2348	40248	260237;260238;260239;260240;260241;260242;260243	348973;348974;348975;348976;348977;348978;348979;348980	348980			8	
QVLKDLVK	2	Acetyl (K)	983.60153	0.60153174	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			62.066	51.36	2	0.038534	28041	160513_QHF_FH_JSI10Kac_4	52.591	26.419			1.0472	1.2502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0472	1.2502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19316000	9063900	10252000	0	0	0	19316000	9063900	10252000	0	0	0	0	0	0	42754	1909	40249	260244	348981	348981			1	
QVLLAQAEAEK	1	Unmodified	1198.6558	0.65575216	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	3	1	37.667	37.11	2	2.9518E-06	31650	160511_QHF_FH_JSI11i_2	117.52	65.038			1.1846	1.1079	58.575	6	5	Median	1.2152	1.0257	NaN	1	0	Median	1.4304	1.6557	NaN	1	1	Median	0.72447	0.70745	83.561	3	3	Median	1.1549	1.1968	NaN	1	1	Median	206750000	100910000	105850000	30639000	15016000	15623000	39044000	17598000	21447000	90588000	48298000	42290000	46483000	19993000	26489000	42755	2523	40250	260245;260246;260247;260248;260249;260250	348982;348983;348984;348985;348986;348987	348986			6	
QVLLGDQIPK	1	Unmodified	1109.6445	0.64445919	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.23	4	4	1			1	2			3	2	3	4	54.244	50.982	2	9.6331E-08	46289	160511_QHF_FH_JSI12i_1	136.63	130.32			1.0115	1.0425	12.534	12	0	Median	1.3593	1.1252	16.637	3	0	Median	0.84236	1.016	3.2502	2	0	Median	0.99579	0.97059	7.6149	3	0	Median	0.98229	1.0948	13.697	4	0	Median	3566500000	1652300000	1914200000	683460000	296780000	386680000	865510000	451490000	414020000	1006200000	455050000	551160000	1011400000	449010000	562350000	42756	1302	40251	260251;260252;260253;260254;260255;260256;260257;260258;260259;260260;260261;260262	348988;348989;348990;348991;348992;348993;348994;348995;348996;348997;348998;348999;349000;349001;349002;349003;349004;349005;349006;349007	348992			19	
QVLLSEPEEAAALYR	0	Unmodified	1687.8781	0.87810054	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	1	3	72.675	71.724	2	1.3129E-16	63529	160511_QHF_FH_JSI9i_1	122.7	92.641			0.99783	1.093	15.114	5	4	Median	1.6296	1.4019	NaN	1	1	Median	0.8989	1.093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2319	1.305	15.238	3	3	Plateau	191420000	85311000	106110000	44084000	13011000	31073000	36368000	19819000	16549000	0	0	0	110970000	52481000	58488000	42757	1040	40252	260263;260264;260265;260266;260267;260268;260269	349008;349009;349010;349011;349012;349013;349014	349012			7	
QVLLSQLHLPTVLPDR	0	Unmodified	1828.0571	0.057067954	4368	Q9BRB3	PIGQ	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	92.585	92.245	3	2.0854E-05	82215	160511_QHF_FH_JSI11i_3	85.988	80.084			0.88114	0.84031	12.911	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72003	0.84031	NaN	1	0	Median	0.88114	0.83303	NaN	1	0	Median	1.0103	1.0462	NaN	1	0	Median	55319000	26558000	28761000	0	0	0	10003000	5588700	4414200	22920000	11201000	11719000	22396000	9768300	12628000	42758	4368	40253	260270;260271;260272	349015;349016	349015			2	
QVLNQDLTFQHIK	1	Unmodified	1582.8467	0.84674083	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	53.33	52.383	2;3	2.4301E-05	45178	160511_QHF_FH_JSI11i_2	92.856	66.324			1.2712	1.5225	13.037	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2285	1.5225	NaN	1	0	Median	1.3597	1.3655	NaN	1	0	Median	1.6017	1.7703	NaN	1	1	Median	262450000	110460000	151990000	0	0	0	99313000	42175000	57138000	88616000	32415000	56201000	74523000	35873000	38649000	42759	2996	40254	260273;260274;260275;260276	349017;349018;349019;349020	349019			4	
QVLQGLDYLHSK	1	Unmodified	1399.746	0.74596415	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.034	53.657	3	0.050173	46031	160511_QHF_FH_JSI12i_2	38.178	25.3			0.90897	0.99157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90897	0.99157	NaN	1	0	Median	38514000	22742000	15772000	0	0	0	0	0	0	0	0	0	38514000	22742000	15772000	42760	2089	40255	260277	349021	349021			0	
QVLQHPWVTQK	1	Unmodified	1362.7408	0.74081919	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	33.823	33.314	2;3	2.8899E-07	28010	160511_QHF_FH_JSI12i_3	120.45	89.888			0.97401	1.0068	34.852	6	2	Median	1.4904	1.1875	NaN	1	1	Median	0.9299	1.0526	NaN	1	0	Median	1.3726	1.3023	42.681	2	1	Median	0.67563	0.70147	4.8618	2	0	Median	623670000	325730000	297940000	53067000	20361000	32706000	107980000	54496000	53483000	219700000	116690000	103020000	242920000	134190000	108730000	42761	2669	40256	260278;260279;260280;260281;260282;260283	349022;349023;349024;349025;349026;349027;349028;349029;349030;349031;349032	349030			11	
QVLQLLS	0	Unmodified	799.48035	0.48035398	4372	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	68.915	68.483	2	0.018612	62028	160511_QHF_FH_JSI10i_1	59.641	59.641			0.91019	0.89879	5.826	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71856	0.81346	NaN	1	0	Median	0.91019	0.89879	NaN	1	0	Median	0.89042	0.90083	NaN	1	0	Median	75692000	41113000	34579000	0	0	0	23046000	13247000	9799300	27973000	16238000	11735000	24673000	11628000	13045000	42762	4372	40257	260284;260285;260286	349033;349034;349035	349035			3	
QVLQLQASHR	0	Unmodified	1178.652	0.65200419	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							3	2			22.444	21.179	2;3	2.6516E-06	17426	160511_QHF_FH_JSI10i_3	113.62	76.278			1.0505	1.0244	54.582	2	2	Median	0.83811	0.6964	NaN	1	1	Median	1.3167	1.5069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31018000	12474000	18544000	19560000	8407600	11152000	11458000	4066300	7391400	0	0	0	0	0	0	42763	5213	40258	260287;260288;260289;260290;260291	349036;349037;349038;349039;349040;349041	349037			6	
QVLQTELER	0	Unmodified	1114.5982	0.59823728	632	O94964	SOGA1	Protein SOGA1;N-terminal form;C-terminal 80 kDa form	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			13.32	12.729	2	0.038981	10463	160511_QHF_FH_JSI10i_2	46.426	28.606			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33358000	0	33358000	0	0	0	33358000	0	33358000	0	0	0	0	0	0	42764	632	40259	260292	349042	349042			1	
QVLSGTLLADAVTWLFTSVLK	1	Unmodified	2261.2671	0.26712031	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			105.82	98.935	2;3	1.1207E-285	59318	160513_QHF_FH_JSI10Kac_6	425.03	368.68			0.87934	0.97257	14.322	3	0	Median	0.9129	0.79616	NaN	1	0	Median	0.85401	1.0109	5.4711	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1237500000	589690000	647850000	343560000	178860000	164700000	893990000	410840000	483150000	0	0	0	0	0	0	42765	4831	40260	260293;260294;260295	349043;349044;349045;349046;349047;349048	349048			6	
QVLTLYNPYEFALK	1	Unmodified	1697.9029	0.90285872	5343	Q9UJG1	MOSPD1	Motile sperm domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.952	96.705	2	7.6494E-30	84880	160511_QHF_FH_JSI11i_2	189.13	137.87			0.84915	0.84158	14.169	4	0	Linear	0.78822	0.64832	NaN	1	0	Median	0.68818	0.8346	NaN	1	0	Median	0.85185	0.84861	NaN	1	0	Median	0.8021	0.88746	NaN	1	0	Median	111440000	69368000	42071000	25917000	16126000	9791000	23062000	14064000	8998100	31789000	19429000	12360000	30671000	19749000	10922000	42766	5343	40261	260296;260297;260298;260299	349049;349050;349051;349052;349053;349054;349055;349056	349054			8	
QVLVAPGNAGTACSEK	1	Unmodified	1600.7879	0.78790532	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	36.454	33.061	2	1.2856E-10	29670	160511_QHF_FH_JSI12i_1	174.05	154.29			0.83095	0.86208	51.793	6	3	Median	1.2697	1.041	NaN	1	1	Median	0.60785	0.71393	NaN	1	0	Median	0.60037	0.58263	5.803	2	1	Median	1.5334	1.6075	46.793	2	1	Median	644020000	336820000	307210000	106760000	50680000	56085000	158140000	86564000	71573000	211950000	120620000	91325000	167180000	78952000	88224000	42767	1205	40262	260300;260301;260302;260303;260304;260305;260306	349057;349058;349059;349060;349061;349062;349063;349064;349065;349066;349067;349068	349061			12	
QVMGLITHTDSPYIR	0	Unmodified	1729.8821	0.88214006	2987	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.345	59.345	2	0.0022833	52683	160511_QHF_FH_JSI11i_3	85.288	37.445			1.3461	1.2596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3461	1.2596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19774000	6449900	13324000	0	0	0	0	0	0	19774000	6449900	13324000	0	0	0	42768	2987	40263	260307	349069	349069			1	
QVMMFSATLSK	1	Unmodified	1241.6148	0.61481532	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	4	3	3	3	67.181	63.686	2	1.1547E-19	33674	160513_QHF_FH_JSI9Kac_6	161.67	137.71			1.0403	0.93526	20.776	12	2	Median	1.0773	0.90512	14.175	3	0	Plateau	0.77138	0.92905	22.867	3	1	Plateau	0.9936	1.0466	10.078	3	1	Plateau	1.0155	1.0717	26.786	3	0	Median	2186000000	1096100000	1089900000	412670000	184400000	228270000	445220000	267890000	177330000	881460000	424920000	456550000	446640000	218920000	227710000	42769	2474	40264	260308;260309;260310;260311;260312;260313;260314;260315;260316;260317;260318;260319;260320	349070;349071;349072;349073;349074;349075;349076;349077;349078;349079;349080;349081;349082;349083;349084;349085;349086	349082			16	
QVMMFSATLSK	1	2 Oxidation (M)	1273.6046	0.60464457	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	2	0	By MS/MS	By matching	By MS/MS	By matching	14.9	0.599							2	5	1	3	2	2	1	49.024	38.767	2	0.0012104	20847	160513_QHF_FH_JSI9Kac_5	62.303	52.349			1.1013	1.0411	6.4975	8	0	Median	1.2124	1.0434	7.3714	3	0	Plateau	0.87258	1.0363	2.0636	2	0	Median	1.1514	1.1263	6.1284	2	0	Median	0.93341	1.0308	NaN	1	0	Median	84087000	42429000	41658000	35220000	16796000	18424000	18639000	10460000	8178800	21411000	10514000	10897000	8816900	4659000	4158000	42770	2474	40264	260321;260322;260323;260324;260325;260326;260327;260328	349087;349088;349089	349087		1967;1968	3	
QVMMFSATLSK	1	Oxidation (M)	1257.6097	0.60972994	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.674							2	7	10	6	2	5	6	63.5	53.469	2	2.1313E-06	28049	160513_QHF_FH_JSI9Kac_6	104.82	82.183			1.1914	1.1777	22.994	16	6	Median	1.1955	1.0263	23.415	6	2	Median	1.2528	1.4673	1.5372	2	0	Median	1.1415	1.0854	21.758	4	1	Median	1.0915	1.2048	23.066	4	3	Median	283780000	135730000	148050000	121100000	54346000	66756000	9100100	4296700	4803400	116440000	58383000	58052000	37146000	18706000	18440000	42771	2474	40264	260329;260330;260331;260332;260333;260334;260335;260336;260337;260338;260339;260340;260341;260342;260343;260344;260345;260346;260347	349090;349091;349092;349093;349094;349095;349096;349097;349098;349099;349100;349101;349102;349103;349104;349105;349106;349107;349108;349109;349110	349105		1967;1968	21	
QVMNAYR	0	Unmodified	880.42252	0.42252152	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.357	13.144	2	0.0073966	10355	160511_QHF_FH_JSI11i_2	87.582	31.556			0.97856	0.95963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97856	0.95963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55256000	28921000	26334000	0	0	0	0	0	0	55256000	28921000	26334000	0	0	0	42772	3951	40265	260348	349111	349111			1	
QVMVVPVGPTCDEYAQK	1	Unmodified	1919.9121	0.91211956	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	13									5	4	2	2	62.767	62.077	2;3	8.2248E-17	56292	160511_QHF_FH_JSI10i_1	126.1	102.42			0.99032	1.1167	27.154	11	6	Median	1.3975	1.1224	36.758	4	4	Median	0.92937	1.1167	4.995	3	2	Median	0.75539	0.72855	10.851	2	0	Median	1.1591	1.1961	5.7918	2	0	Median	980290000	489560000	490730000	148670000	55213000	93456000	250180000	124960000	125230000	318450000	193060000	125390000	262990000	116330000	146670000	42773	1282	40266	260349;260350;260351;260352;260353;260354;260355;260356;260357;260358;260359;260360;260361	349112;349113;349114;349115;349116;349117;349118;349119;349120;349121;349122;349123;349124;349125;349126;349127;349128;349129;349130;349131;349132	349127			21	
QVNITVQK	1	Unmodified	928.53418	0.53418046	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	28.902	24.643	2	0.0016392	21907	160511_QHF_FH_JSI12i_1	86.794	46.526			0.97934	1.0578	49.781	7	2	Median	0.6591	0.54834	NaN	1	1	Median	0.74095	0.8851	39.735	2	0	Median	0.9121	0.89383	43.335	2	0	Median	1.4842	1.5747	56.261	2	1	Median	932980000	536420000	396560000	142650000	98247000	44400000	267580000	146770000	120810000	213070000	129360000	83705000	309690000	162040000	147640000	42774	5177	40267	260362;260363;260364;260365;260366;260367;260368	349133;349134;349135;349136;349137;349138;349139;349140;349141	349135			9	
QVPCVCAVR	0	Unmodified	1087.5267	0.52666902	1786	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2	0		3								1	1		1	17.911	17.03	2	0.051494	14191	160511_QHF_FH_JSI9i_2	35.494	0			1.0181	1.1114	47.099	3	0	Median	1.9288	1.6993	NaN	1	0	Median	0.54242	0.66344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0181	1.1114	NaN	1	0	Median	124710000	58249000	66463000	48551000	16165000	32386000	38794000	26581000	12212000	0	0	0	37368000	15502000	21866000	42775	1786	40268	260369;260370;260371	349142	349142			1	
QVPDTSVQETDR	0	Unmodified	1373.6423	0.64228694	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.877	21.747	2	0.001613	18869	160511_QHF_FH_JSI11i_1	61.353	43.917			1.208	1.2261	21.042	5	0	Median	1.208	0.99187	NaN	1	0	Median	1.1574	1.3633	NaN	1	0	Median	1.1756	1.1328	11.2	2	0	Median	1.5663	1.6721	NaN	1	0	Median	373890000	142920000	230960000	107810000	34454000	73357000	73217000	31285000	41932000	86809000	37434000	49375000	106050000	39749000	66299000	42776	2892	40269	260372;260373;260374;260375;260376	349143;349144;349145;349146;349147;349148	349143			5	
QVPFNEVR	0	Unmodified	987.51378	0.51377937	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	35.112	34.182	2	0.0026131	29110	160511_QHF_FH_JSI12i_2	78.77	27.424			0.77308	0.77546	9.0412	3	1	Median	0.82007	0.69557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77308	0.77546	NaN	1	0	Median	0.76227	0.83233	NaN	1	0	Median	243610000	115480000	128130000	51285000	30651000	20633000	0	0	0	131100000	49948000	81150000	61228000	34883000	26344000	42777	1725	40270	260377;260378;260379	349149;349150;349151;349152;349153;349154	349150			6	
QVPGGGGGGGSGGGGGSGGGGSGGGR	0	Unmodified	1842.7953	0.79532697	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.5634	7.2262	2	2.3965E-35	5083	160511_QHF_FH_JSI12i_1	163.35	152.74			1.0346	0.97152	16.259	4	0	Median	1.0356	0.84741	NaN	1	0	Median	0.73473	0.86583	NaN	1	0	Median	1.1986	1.1705	NaN	1	0	Median	1.0335	1.0901	NaN	1	0	Median	418440000	221310000	197130000	91617000	38885000	52732000	113430000	67781000	45647000	104260000	50109000	54152000	109140000	64538000	44599000	42778	5295	40271	260380;260381;260382;260383	349155;349156;349157;349158;349159;349160;349161;349162	349158			8	
QVPLNPDLNQTK	1	Unmodified	1365.7252	0.72522871	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.398	42.92	2	0.0010937	38075	160511_QHF_FH_JSI9i_1	67.726	29.639			1.5047	1.5952	70.038	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.36445	0.41398	NaN	1	1	Median	1.1307	1.0855	NaN	1	0	Median	1.5047	1.6164	NaN	1	0	Median	97044000	53218000	43825000	0	0	0	25068000	17847000	7221000	32080000	14653000	17427000	39896000	20718000	19178000	42779	2606	40272	260384;260385;260386;260387	349163;349164;349165;349166	349166			4	
QVPNESFFNFFNPLK	1	Unmodified	1826.8992	0.89917033	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							3	2	4	4	101.9	101.81	2;3	3.8421E-40	90972	160511_QHF_FH_JSI11i_3	206.36	141.92			1.0858	0.88118	29.09	13	1	Median	0.90996	0.78381	22.671	3	0	Median	0.68776	0.83921	0.62749	2	1	Median	1.1777	1.118	16.961	4	0	Median	1.2635	1.3435	27.899	4	0	Median	3627700000	1889100000	1738600000	460230000	234630000	225600000	616120000	351880000	264250000	1180300000	611130000	569200000	1371000000	691460000	679540000	42780	4309	40273	260388;260389;260390;260391;260392;260393;260394;260395;260396;260397;260398;260399;260400	349167;349168;349169;349170;349171;349172;349173;349174;349175;349176;349177;349178;349179;349180;349181;349182;349183;349184	349167			18	
QVPVDVVEMK	1	Unmodified	1142.6005	0.60054547	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.015	54.356	2	1.3568E-05	48179	160511_QHF_FH_JSI9i_1	101.82	83.035			0.9187	0.88969	11.827	4	0	Median	1.0419	0.84631	NaN	1	0	Median	0.86823	1.0264	NaN	1	0	Median	0.9721	0.93529	NaN	1	0	Median	0.75402	0.78217	NaN	1	0	Median	2256700000	1104200000	1152500000	642320000	300400000	341920000	502790000	286290000	216500000	580420000	248270000	332150000	531140000	269210000	261940000	42781	1867	40274	260401;260402;260403;260404	349185;349186;349187;349188;349189;349190;349191;349192;349193;349194;349195;349196;349197;349198;349199	349197			15	
QVPVESDLQEIIK	1	Unmodified	1496.8086	0.80862399	2368	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	no	no	0	0	0	0	By MS/MS				1	0	1									1				79.832	78.969	2	0.0080916	70234	160511_QHF_FH_JSI9i_1	48.741	30.429			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42782	2368	40275	260405	349200	349200			1	
QVQAEVPGSPIFVMR	0	Unmodified	1656.8658	0.86576171	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.913	76.071	2	3.4715E-05	67701	160511_QHF_FH_JSI10i_2	155	98.439			0.82605	0.85852	4.5545	4	0	Median	0.95912	0.8211	NaN	1	0	Median	0.71568	0.86724	NaN	1	0	Median	0.81985	0.84989	NaN	1	0	Median	0.83229	0.9155	NaN	1	0	Median	106640000	56388000	50256000	23608000	11559000	12049000	25250000	15002000	10248000	35869000	18504000	17365000	21917000	11323000	10594000	42783	2348	40276	260406;260407;260408;260409	349201;349202;349203	349203			3	
QVQEEISR	0	Unmodified	987.49852	0.49852324	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				13.122	12.211	2	0.01741	9540	160511_QHF_FH_JSI9i_1	58.596	7.2502			1.308	1.1029	NaN	1	1	Median	1.308	1.1029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66262000	29974000	36288000	66262000	29974000	36288000	0	0	0	0	0	0	0	0	0	42784	4477	40277	260410	349204	349204			1	
QVQEFLK	1	Unmodified	890.48617	0.48616764	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			1	2	4	2	33.74	33.08	2	0.005232	30100	160511_QHF_FH_JSI12i_1	102.71	54.21			0.79318	0.79227	40.885	8	8	Median	0.76323	0.65918	NaN	1	1	Median	0.60625	0.7228	42.968	2	2	Median	0.39162	0.39477	47.529	3	3	Plateau	1.042	1.1299	36.832	2	2	Median	2546300000	1582600000	963620000	266010000	164740000	101270000	634790000	425960000	208830000	1068800000	658370000	410480000	576620000	333580000	243040000	42785	1034	40278	260411;260412;260413;260414;260415;260416;260417;260418;260419	349205;349206;349207;349208;349209;349210;349211;349212;349213	349207			9	
QVQEYQDLLTPVLHHTTEGYPVVPK	1	Unmodified	2890.4865	0.48650857	3932	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		86.538	85.961	4	5.1965E-05	76345	160511_QHF_FH_JSI10i_2	49.266	46.279			0.79624	0.89566	7.0914	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75922	0.94172	NaN	1	0	Median	0.83506	0.85186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47283000	28137000	19146000	0	0	0	23986000	12783000	11203000	23297000	15355000	7942800	0	0	0	42786	3932	40279	260420;260421	349214;349215	349215			2	
QVQFDPDSPETSK	1	Unmodified	1476.6733	0.67325272	5537	Q9Y2U5;Q99759	MAP3K2;MAP3K3	Mitogen-activated protein kinase kinase kinase 2;Mitogen-activated protein kinase kinase kinase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.784	35.176	2	1.0844E-07	30935	160511_QHF_FH_JSI9i_1	100.55	74.04			0.95643	1.2118	11.906	4	1	Linear	1.6511	1.3331	NaN	1	1	Median	0.92807	1.1016	NaN	1	0	Median	1.122	1.0702	NaN	1	0	Median	1.3284	1.3331	NaN	1	0	Median	127920000	60669000	67255000	24559000	11633000	12926000	45283000	19995000	25288000	30572000	16747000	13824000	27510000	12294000	15216000	42787	5537	40280	260422;260423;260424;260425;260426	349216;349217;349218;349219;349220;349221;349222	349222			7	
QVQFHQGFGDLAVLK	1	Unmodified	1685.8889	0.88893999	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.012	70.72	3	0.0006254	60980	160511_QHF_FH_JSI12i_2	66.568	54.592			0.74369	0.84477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74369	0.84477	NaN	1	1	Median	34920000	17387000	17533000	0	0	0	0	0	0	0	0	0	34920000	17387000	17533000	42788	2332	40281	260427	349223	349223			1	
QVQFHQGFGDLAVLKPSNK	2	Unmodified	2112.1116	0.11162272	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	2	3		64.693	63.757	3;4	8.3934E-25	56295	160511_QHF_FH_JSI11i_3	172.66	154.6			0.95994	0.9081	8.0038	8	4	Median	1.1124	0.78911	9.9217	3	2	Plateau	0.75738	0.88193	9.1401	2	0	Median	0.96788	0.90693	8.8894	3	2	Median	NaN	NaN	NaN	0	0	Median	1128700000	600460000	528290000	374260000	204190000	170070000	246680000	126500000	120180000	507800000	269770000	238040000	0	0	0	42789	2332	40282	260428;260429;260430;260431;260432;260433;260434;260435	349224;349225;349226;349227;349228;349229;349230;349231;349232;349233;349234;349235;349236;349237	349224			14	
QVQGSEISSIDEFCRK	1	Unmodified	1881.8891	0.88907593	5358	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	49.891	49.653	3	0.0012893	42519	160511_QHF_FH_JSI12i_3	54.812	45.528			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42790	5358	40283	260436	349238	349238			1	
QVQHILASASPSGR	0	Unmodified	1449.7688	0.76882486	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.08	5.74		2	7						3	5	4	3		27.732	25.139	2;3	3.4689E-06	21935	160511_QHF_FH_JSI9i_2	128.85	97.425			0.6875	0.65651	81.367	10	10	Median	0.61381	0.53086	96.355	5	5	Median	0.72133	0.82531	39.418	4	4	Median	1.8569	1.7711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	508090000	305240000	202850000	213590000	133730000	79860000	264830000	161120000	103710000	29661000	10381000	19280000	0	0	0	42791	636	40284	260437;260438;260439;260440;260441;260442;260443;260444;260445;260446;260447;260448	349239;349240;349241;349242;349243;349244;349245;349246;349247;349248;349249;349250	349248			12	
QVQIDGLVVLK	1	Unmodified	1210.7285	0.72852317	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	81.293	80.666	2	4.5465E-08	70861	160511_QHF_FH_JSI11i_2	126.31	97.617			1.0018	1.0512	15.999	8	1	Median	1.4162	1.1743	21.722	2	0	Median	0.84882	1.0273	17.037	2	1	Median	1.0057	0.98074	23.916	2	0	Median	0.95023	1.0248	9.6436	2	0	Median	331540000	168430000	163120000	71539000	36337000	35202000	91115000	45840000	45275000	93150000	48008000	45142000	75740000	38242000	37498000	42792	283	40285	260449;260450;260451;260452;260453;260454;260455;260456	349251;349252;349253;349254;349255;349256;349257;349258;349259;349260;349261;349262;349263	349261			13	
QVQLLVTSQDVDNYK	1	Unmodified	1748.8945	0.89447888	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	64.625	64.124	2	3.4778E-27	58099	160511_QHF_FH_JSI10i_1	151.26	121.51			0.89495	0.89072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89495	0.89072	NaN	1	1	Median	24540000	9568500	14972000	0	0	0	8393800	0	8393800	0	0	0	16146000	9568500	6577900	42793	2549	40286	260457;260458;260459	349264;349265;349266	349266			3	
QVQNLVFHSLTVTQMAFSPNEK	1	Unmodified	2517.2686	0.26859365	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	84.521	76.272	3	6.5568E-60	41519	160513_QHF_FH_JSI9Kac_6	193.11	173.39			0.94688	0.8982	17.294	4	1	Median	0.95992	0.82567	NaN	1	0	Median	0.68421	0.81161	NaN	1	0	Median	1.2396	1.1753	NaN	1	0	Median	0.93401	0.9771	NaN	1	1	Median	389320000	224310000	165000000	117800000	61348000	56457000	164210000	98873000	65335000	74446000	40563000	33883000	32860000	23530000	9330100	42794	3050	40287	260460;260461;260462;260463	349267;349268;349269	349267			2	
QVQPEGPYR	0	Unmodified	1072.5302	0.53015772	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.624	5	6	1							1	4	4	3	17.606	16.899	2	2.1176E-22	13739	160511_QHF_FH_JSI11i_2	167.9	107.54			1.3552	1.3288	11.136	2	1	Median	1.4884	1.2282	NaN	1	0	Median	1.2339	1.4376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1476200000	552600000	923630000	32419000	12672000	19747000	1443800000	539930000	903880000	0	0	0	0	0	0	42795	1650	40288	260464;260465;260466;260467;260468;260469;260470;260471;260472;260473;260474;260475	349270;349271;349272;349273;349274;349275;349276;349277;349278;349279;349280;349281	349279			12	
QVQSLTCEVDALK	1	Unmodified	1489.7446	0.74464352	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.984	59.33	2	0.00046581	53960	160511_QHF_FH_JSI12i_1	69.815	44.977			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42796	913	40289	260476	349282	349282			1	
QVQSQAHGLQMR	0	Unmodified	1381.6885	0.68846605	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	2	2		15.417	14.943	2;3	0.00012958	12126	160511_QHF_FH_JSI10i_3	69.641	57.427			0.94381	1.1237	45.8	4	1	Median	0.60757	0.52838	NaN	1	1	Median	0.94381	1.1237	26.591	2	0	Median	1.5046	1.4242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242860000	121160000	121690000	12223000	8247700	3975000	144200000	83472000	60727000	86434000	29441000	56993000	0	0	0	42797	2560	40290	260477;260478;260479;260480;260481	349283;349284;349285;349286;349287	349284			5	
QVQTLQDELQK	1	Unmodified	1328.6936	0.69359423	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.566	39.946	2	9.6591E-05	36230	160511_QHF_FH_JSI12i_1	98.943	57.914			0.89254	0.93582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89254	0.93582	NaN	1	1	Median	20454000	9183600	11270000	0	0	0	0	0	0	0	0	0	20454000	9183600	11270000	42798	5458	40291	260482	349288	349288			1	
QVQVALETAQR	0	Unmodified	1241.6728	0.67279921	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	33.82	33.215	2	0.00010188	29510	160511_QHF_FH_JSI10i_1	86.898	37.48			1.1227	1.1335	14.582	4	0	Median	1.183	1.0097	NaN	1	0	Median	1.0654	1.2478	NaN	1	0	Median	1.3962	1.3594	NaN	1	0	Median	0.95915	1.0296	NaN	1	0	Median	183190000	93048000	90141000	37564000	21230000	16334000	56516000	31151000	25365000	52604000	22302000	30302000	36506000	18366000	18140000	42799	2636	40292	260483;260484;260485;260486	349289;349290;349291	349290			2	
QVRPVTEK	1	Unmodified	955.54508	0.5450795	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			7.0584	6.5216	3	0.017794	4455	160511_QHF_FH_JSI10i_3	35.511	6.038			1.7177	1.677	24.747	2	0	Median	1.7175	1.4078	NaN	1	0	Median	1.718	1.9977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	622860000	215580000	407280000	289190000	91258000	197930000	333670000	124320000	209350000	0	0	0	0	0	0	42800	1479	40293	260487;260488	349292;349293	349292			2	
QVSASELHTSGILGPETLR	0	Unmodified	1994.0433	0.043268383	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		62.056	61.583	3	9.0367E-05	54153	160511_QHF_FH_JSI9i_2	77.554	63.853			0.73609	0.65503	32.689	2	2	Median	0.97401	0.82537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55629	0.51985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139850000	82480000	57372000	90153000	55751000	34403000	0	0	0	49699000	26729000	22970000	0	0	0	42801	1898	40294	260489;260490	349294;349295	349295			2	
QVSDDLTER	0	Unmodified	1061.4989	0.49891717	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				1	4	2	2	21.781	17.826	2	4.7633E-08	15577	160511_QHF_FH_JSI12i_1	144.77	69.032			0.97806	1.0422	17.855	8	1	Median	1.4446	1.1863	NaN	1	0	Median	0.81463	0.94381	25.462	3	1	Median	1.0567	1.0283	16.37	2	0	Median	0.96544	1.0422	13.046	2	0	Median	4138800000	2058600000	2080300000	816200000	366590000	449610000	1140200000	634330000	505860000	1069500000	518700000	550790000	1113000000	538950000	574010000	42802	1424	40295	260491;260492;260493;260494;260495;260496;260497;260498;260499	349296;349297;349298;349299;349300;349301;349302;349303;349304;349305;349306;349307;349308;349309	349299			14	
QVSDLISVLR	0	Unmodified	1128.6503	0.65027285	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.75	3	4	4					4		3	4	4	4	76.241	72.937	2	6.0834E-19	65953	160511_QHF_FH_JSI10i_2	174.98	101.32			0.95285	0.94237	31.251	15	2	Median	0.93746	0.80648	55.543	3	1	Median	0.65553	0.79538	31.629	4	1	Median	1.0603	1.0035	15.73	4	0	Median	1.006	1.03	13.196	4	0	Median	2508000000	1399800000	1108100000	396800000	218930000	177870000	600810000	399330000	201480000	867880000	445610000	422270000	642490000	335970000	306520000	42803	1128	40296	260500;260501;260502;260503;260504;260505;260506;260507;260508;260509;260510;260511;260512;260513;260514	349310;349311;349312;349313;349314;349315;349316;349317;349318;349319;349320;349321;349322;349323;349324;349325;349326;349327;349328;349329;349330;349331;349332	349329			23	
QVSDVQK	1	Unmodified	802.41848	0.418482	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	6.3992	3.7755	2	0.0014179	3629	160511_QHF_FH_JSI11i_1	120.92	49.207			1.0332	0.94452	15.696	6	0	Median	1.1879	0.93761	NaN	1	0	Median	0.70669	0.82011	NaN	1	0	Median	1.0576	1.0416	12.801	2	0	Median	0.93378	1.0129	25.238	2	0	Median	5282800000	2720900000	2561800000	1067000000	470460000	596550000	1361100000	747030000	614050000	1406300000	707860000	698410000	1448400000	795580000	652810000	42804	2380	40297	260515;260516;260517;260518;260519;260520	349333;349334;349335;349336;349337;349338;349339;349340	349333			8	
QVSGGEDEIQQLQK	1	Unmodified	1557.7635	0.76346471	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.376	37.646	2	0.00020167	34139	160511_QHF_FH_JSI12i_1	110.08	84.691			1.2749	1.0922	30.918	3	0	Median	1.2749	1.0922	NaN	1	0	Median	0.76808	0.90945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5507	1.6622	NaN	1	0	Median	126700000	61743000	64953000	36954000	17250000	19704000	45663000	22826000	22837000	0	0	0	44079000	21666000	22413000	42805	3063	40298	260521;260522;260523;260524	349341;349342;349343;349344	349342			4	
QVSIEEGERK	1	Unmodified	1173.599	0.59896556	1175;2861	P20340;Q53S08	RAB6A;RAB6C	Ras-related protein Rab-6A	no	no	0	0	0	1				By MS/MS	3	0			1										1	12.116	12.198	3	0.049717	9370	160511_QHF_FH_JSI12i_3	24.696	9.1562			1.3956	1.4126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3956	1.4126	NaN	1	1	Median	35166000	13960000	21206000	0	0	0	0	0	0	0	0	0	35166000	13960000	21206000	42806	1175;2861	40299	260525	349345	349345			1	
QVSITASTR	0	Unmodified	961.51926	0.51925868	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS		8	6		1					1					2		25.597	17.807	2	0.002	14378	160511_QHF_FH_JSI11i_2	68.016	43.018			1.531	1.5086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.531	1.5086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4399500	2134200	2265300	0	0	0	0	0	0	4399500	2134200	2265300	0	0	0	42807	485	40300	260526;260527	349346;349347	349347			2	
QVSLEAWLQR	0	Unmodified	1228.6564	0.65642086	1750;1530	P42229;P51692	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	no	no	0	0	0	0			By MS/MS		3	0			1									1		74.645	74.645	2	0.012024	66639	160511_QHF_FH_JSI11i_3	55.567	26.84			1.5293	1.4161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5293	1.4161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13885000	7150200	6735000	0	0	0	0	0	0	13885000	7150200	6735000	0	0	0	42808	1530;1750	40301	260528	349348	349348			1	
QVSLPVTK	1	Unmodified	870.51747	0.51746776	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.307	34.72	2	0.049485	31454	160511_QHF_FH_JSI12i_1	46.129	15.516			2.0686	2.1658	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0686	2.1658	NaN	1	1	Median	41036000	19023000	22013000	0	0	0	0	0	0	0	0	0	41036000	19023000	22013000	42809	2137	40302	260529	349349	349349			1	
QVSNGHIAYFPAMK	1	Unmodified	1561.7711	0.77113304	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.501	49.263	3	0.00033301	42139	160511_QHF_FH_JSI12i_3	50.155	38.009			1.5349	1.5787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5349	1.5787	NaN	1	0	Median	64426000	24021000	40405000	0	0	0	0	0	0	0	0	0	64426000	24021000	40405000	42810	5507	40303	260530	349350	349350			1	
QVSNMVAK	1	Unmodified	875.45349	0.4534873	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	3	2	1	13.988	13.468	2	0.00072715	11074	160511_QHF_FH_JSI10i_2	122.18	53.261			1.2599	1.2243	54.846	9	7	Median	1.9482	1.5763	69.161	3	2	Plateau	0.76871	0.92527	57.905	3	2	Median	0.75892	0.74918	69.46	2	2	Median	1.2854	1.3616	NaN	1	1	Median	3190400000	1434900000	1755500000	712060000	270860000	441200000	922710000	508740000	413970000	797770000	328480000	469290000	757870000	326860000	431000000	42811	2094	40304	260531;260532;260533;260534;260535;260536;260537;260538;260539	349351;349352;349353;349354;349355;349356;349357;349358;349359;349360	349359			10	
QVSNMVAK	1	Oxidation (M)	891.4484	0.44840192	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			6.8266	6.5894	2	0.049676	4523	160511_QHF_FH_JSI10i_1	41.025	21.238			0.95514	1.1137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95514	1.1137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51472000	23509000	27963000	0	0	0	51472000	23509000	27963000	0	0	0	0	0	0	42812	2094	40304	260540	349361	349361			1	
QVSQQPK	1	Unmodified	813.43447	0.43446642	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.7906	4.4766	2	0.017903	2357	160511_QHF_FH_JSI11i_1	60.76	37.741			0.50695	0.44909	22.887	4	0	Linear	0.8083	0.66615	NaN	1	0	Median	0.37793	0.44727	NaN	1	0	Median	0.43695	0.42235	NaN	1	0	Median	0.58816	0.6199	NaN	1	0	Median	936920000	627300000	309620000	112110000	61784000	50326000	299610000	212610000	86991000	302800000	212230000	90576000	222400000	140670000	81729000	42813	2618	40305	260541;260542;260543;260544	349362;349363;349364	349362			3	
QVSSHIQVLAR	0	Unmodified	1236.6939	0.693869	1308;2684	P28347;Q99594;Q15562;Q15561	TEAD1;TEAD3;TEAD2;TEAD4	Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4;Transcriptional enhancer factor TEF-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		37.387	28.666	2;3	0.0020316	16085	160513_QHF_FH_JSI10Kac_6	51.013	31.955			0.71871	0.81243	5.4299	3	0	Median	0.88385	0.74417	NaN	1	0	Median	0.71396	0.81712	0.81402	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22518000	14212000	8306000	7120900	3367200	3753700	15397000	10845000	4552200	0	0	0	0	0	0	42814	1308;2684	40306	260545;260546;260547;260548;260549	349365;349366;349367;349368;349369	349368			5	
QVSVALSSSSIR	0	Unmodified	1232.6725	0.67246486	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.5	6.5		2						2		1		2	1	47.925	42.15	2	0.00014806	23325	160513_QHF_FH_JSI11Kac_5	94.616	66.874			1.0784	1.1206	35.61	4	3	Median	0.8357	0.66832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2452	1.2275	30.401	2	1	Median	1.162	1.2685	NaN	1	1	Median	59275000	30357000	28918000	2445400	1427300	1018100	0	0	0	38269000	19285000	18985000	18560000	9644700	8915100	42815	3404	40307	260550;260551;260552;260553	349370;349371;349372;349373	349373			3	
QVTALQEEGTLGLYHAQLK	1	Unmodified	2098.1059	0.10586864	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		4								1		1	2	67.241	66.22	3	2.7539E-05	57060	160511_QHF_FH_JSI12i_2	88.282	67.725			0.74348	0.76403	20.943	4	2	Median	0.91914	0.76832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54591	0.53908	NaN	1	0	Median	0.74348	0.8184	10.516	2	2	Median	151110000	83523000	67586000	35380000	20096000	15285000	0	0	0	50243000	29014000	21229000	65485000	34413000	31072000	42816	2574	40308	260554;260555;260556;260557	349374;349375;349376	349375			3	
QVTCVAWVR	0	Unmodified	1117.5702	0.57024839	2450	Q13610	PWP1	Periodic tryptophan protein 1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			52.515	43.916	2	0.059624	24177	160513_QHF_FH_JSI10Kac_6	40.882	29.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42817	2450	40309	260558	349377	349377			1	
QVTDAETKPK	2	Unmodified	1115.5823	0.58225287	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	6	6					3			3	3	4	5	7.2979	5.3033	2;3	0.00077729	4478	160511_QHF_FH_JSI12i_2	63.473	44.373			1.6093	1.8048	78.801	15	13	Median	2.2078	1.8048	44.458	3	2	Median	1.6093	1.946	104.38	3	3	Median	2.0853	2.0349	92.831	4	4	Median	0.78333	0.86255	77.903	5	4	Median	2362100000	1197500000	1164500000	465740000	185240000	280510000	245700000	159560000	86139000	610440000	295350000	315090000	1040200000	557390000	482800000	42818	359	40310	260559;260560;260561;260562;260563;260564;260565;260566;260567;260568;260569;260570;260571;260572;260573	349378;349379;349380;349381;349382;349383;349384;349385;349386;349387;349388;349389;349390;349391;349392;349393	349380			16	
QVTDAETKPK	2	Acetyl (K)	1157.5928	0.59281755	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.471					2	1					1	1	1	21.275	14.151	2	0.0074909	9088	160513_QHF_FH_JSI12Kac_3	72.006	59.478			0.66043	0.45177	57.479	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.99355	1.1857	NaN	1	0	Median	0.43899	0.426	NaN	1	0	Median	0.40971	0.45177	NaN	1	1	Median	13546000	7589500	5956400	0	0	0	5729100	2588900	3140100	5443400	3480200	1963200	2373400	1520300	853140	42819	359	40310	260574;260575;260576	349394;349395	349395	177		2	
QVTEEVRK	1	Unmodified	987.53491	0.53490874	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							1	2	2	4	7.5005	7.1954	2;3	0.003276	4900	160511_QHF_FH_JSI11i_2	46.819	16.255			1.0117	1.0934	15.254	9	1	Median	1.2605	1.0727	NaN	1	0	Median	0.78733	0.96525	29.693	2	1	Median	1.0516	1.0574	5.8157	2	0	Median	1.0831	1.1469	15.323	4	0	Median	1334800000	686810000	648000000	81798000	41496000	40301000	347910000	181440000	166460000	339640000	177090000	162550000	565460000	286780000	278680000	42820	1016	40311	260577;260578;260579;260580;260581;260582;260583;260584;260585	349396;349397;349398;349399	349397			4	
QVTESVSDSITVLP	0	Unmodified	1473.7563	0.75625407	458	O60888	CUTA	Protein CutA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.924	78.451	2	0.00011133	69749	160511_QHF_FH_JSI9i_1	105.98	96.022			0.84276	1.0117	1.0298	4	0	Linear	1.2605	1.0193	NaN	1	0	Median	0.85643	1.0054	NaN	1	0	Median	1.0283	0.99763	NaN	1	0	Median	0.95236	1.018	NaN	1	0	Median	342460000	169660000	172800000	59224000	24556000	34668000	114110000	57830000	56285000	76570000	37522000	39048000	92548000	49752000	42796000	42821	458	40312	260586;260587;260588;260589	349400;349401;349402;349403;349404;349405;349406;349407;349408;349409;349410;349411;349412	349411			13	
QVTGQPQNASFVK	1	Unmodified	1402.7205	0.72047768	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.96	4	7				1	2			3	3	3	5	31.884	29.66	2	5.176E-22	26272	160511_QHF_FH_JSI10i_1	172.61	146.67			0.98045	0.96881	34.048	12	8	Median	1.2553	1.0615	5.5714	2	1	Median	0.70141	0.8333	40.464	3	2	Median	0.9386	0.91976	38.492	3	1	Median	0.88675	0.95447	41.883	4	4	Median	729780000	397560000	332220000	154820000	73052000	81769000	213850000	135640000	78215000	154620000	94773000	59845000	206490000	94099000	112390000	42822	2906	40313	260590;260591;260592;260593;260594;260595;260596;260597;260598;260599;260600;260601;260602;260603	349413;349414;349415;349416;349417;349418;349419;349420;349421;349422;349423;349424;349425;349426;349427;349428;349429	349419			17	
QVTGVTR	0	Unmodified	759.4239	0.42390173	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.35	4	3	2				2	4		4	5	4	2	8.5954	4.6509	2	0.0023385	5597	160511_QHF_FH_JSI10i_2	111.65	28.361			0.98554	1.0371	15.028	15	0	Median	1.2113	0.98582	5.2927	4	0	Median	0.89433	1.0679	24.577	5	0	Median	1.007	1.0119	9.7936	4	0	Median	0.93298	1.004	6.05	2	0	Median	11656000000	5700000000	5955800000	2396800000	1032300000	1364500000	3514600000	1818400000	1696200000	4743000000	2328100000	2414900000	1001400000	521190000	480200000	42823	87	40314	260604;260605;260606;260607;260608;260609;260610;260611;260612;260613;260614;260615;260616;260617;260618	349430;349431;349432;349433;349434;349435;349436;349437;349438;349439;349440;349441;349442;349443;349444;349445;349446;349447;349448	349447			19	
QVTITGSAASISLAQYLINAR	0	Unmodified	2176.1852	0.18518159	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	2	3	1	2	93.381	86.205	2;3	0	46890	160513_QHF_FH_JSI11Kac_6	403.89	335.38			0.90462	0.97551	22.03	8	2	Median	1.2462	1.0643	6.8515	2	1	Median	0.71854	0.85741	5.0447	3	0	Plateau	1.3142	1.2635	NaN	1	0	Median	0.7564	0.80508	39.342	2	1	Median	1072000000	568460000	503520000	200600000	94046000	106550000	625920000	350360000	275560000	118030000	59816000	58219000	127430000	64244000	63191000	42824	2656	40315	260619;260620;260621;260622;260623;260624;260625;260626	349449;349450;349451;349452;349453;349454;349455;349456;349457;349458;349459;349460;349461	349451			13	
QVTNAVLK	1	Unmodified	871.51272	0.51271674	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1.67	0.471	1	2								1	1		1	37.14	36.366	2	0.039691	16344	160511_QHF_FH_JSI12i_2	45.335	29.703			0.83609	0.9538	34.944	3	0	Median	1.807	1.6002	NaN	1	0	Median	0.83609	0.9538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73397	0.82245	NaN	1	0	Median	87925000	46957000	40969000	36075000	18231000	17844000	21589000	11212000	10376000	0	0	0	30262000	17513000	12749000	42825	2453	40316	260627;260628;260629	349462;349463	349462			2	
QVTNGQGENK	1	Unmodified	1073.5102	0.51015055	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1							1	2	1	2	4.6218	4.3904	2	7.0307E-34	2218	160511_QHF_FH_JSI12i_1	204.07	168.19			0.80675	0.88862	21.977	6	0	Median	1.3117	1.1157	NaN	1	0	Median	0.79685	0.96324	11.802	2	0	Median	0.91779	0.89113	NaN	1	0	Median	0.67309	0.68876	18.783	2	0	Median	585430000	301280000	284140000	142910000	62924000	79987000	192540000	105630000	86910000	88838000	43657000	45181000	161140000	89077000	72065000	42826	404	40317	260630;260631;260632;260633;260634;260635	349464;349465;349466;349467	349466			4	
QVTPDGESDEVGVIPSK	1	Unmodified	1755.8527	0.85267365	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	48.394	47.626	2	1.6077E-10	42337	160511_QHF_FH_JSI9i_1	167.55	148.31			0.92022	0.95343	37.883	6	5	Median	1.0653	0.88805	61.096	2	2	Median	0.50726	0.57553	NaN	1	1	Median	1.1888	1.1524	NaN	1	0	Median	0.92022	0.95918	27.652	2	2	Median	152450000	80085000	72370000	46434000	23971000	22463000	31687000	20361000	11325000	33809000	15359000	18450000	40525000	20393000	20131000	42827	2330	40318	260636;260637;260638;260639;260640;260641	349468;349469;349470;349471;349472;349473;349474;349475	349475			8	
QVTQEEGQQLAR	0	Unmodified	1385.6899	0.68990583	1977	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	18.328	17.926	2	2.0554E-33	15228	160511_QHF_FH_JSI11i_1	235.01	192.42			0.96055	0.95408	9.8765	7	6	Median	1.1797	0.96903	NaN	1	0	Median	0.75298	0.8875	9.9071	2	2	Median	1.06	1.0471	13.154	2	2	Median	0.92363	0.98236	5.9936	2	2	Median	856200000	436570000	419630000	108740000	45226000	63514000	285720000	157840000	127880000	250160000	120580000	129570000	211570000	112910000	98661000	42828	1977	40319	260642;260643;260644;260645;260646;260647;260648	349476;349477;349478;349479;349480;349481;349482	349477			7	
QVTQLAIDTEER	0	Unmodified	1401.71	0.70997257	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	45.282	41.32	2	3.0854E-53	36864	160511_QHF_FH_JSI10i_1	218.54	162.29			0.90482	0.90846	11.967	8	2	Median	0.98145	0.81413	12.023	2	2	Median	0.72986	0.86171	11.845	2	0	Median	1.0331	0.99358	9.1867	2	0	Median	0.81304	0.87676	14.495	2	0	Median	1727900000	885670000	842180000	402190000	221290000	180900000	463180000	253250000	209930000	499500000	237890000	261610000	362990000	173240000	189750000	42829	2217	40320	260649;260650;260651;260652;260653;260654;260655;260656	349483;349484;349485;349486;349487;349488;349489;349490;349491	349487			9	
QVTQLAIDTEERLK	1	Unmodified	1642.889	0.88899957	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		1	3	53.696	53.103	2;3	4.4735E-06	45546	160511_QHF_FH_JSI12i_3	136.39	95.918			0.6819	0.68863	19.81	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93711	0.94178	NaN	1	1	Median	0.63709	0.67037	3.8004	2	2	Median	401610000	208920000	192690000	0	0	0	0	0	0	116340000	65061000	51283000	285260000	143860000	141400000	42830	2217	40321	260657;260658;260659;260660;260661	349492;349493;349494;349495;349496	349495			5	
QVTSAEECK	1	Unmodified	1050.4652	0.4651742	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.4681	6.3569	2	0.0024991	4383	160511_QHF_FH_JSI10i_1	64.711	46.726			0.74316	0.7082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74316	0.7082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22164000	12981000	9183400	0	0	0	0	0	0	22164000	12981000	9183400	0	0	0	42831	5666	40322	260662;260663	349497;349498	349498			2	
QVTSNSLSGTQEDGLDDPRLEK	1	Unmodified	2388.1405	0.14047583	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	47.045	46.308	3	2.0943E-15	42063	160511_QHF_FH_JSI12i_1	130.83	113.11			0.99768	1.0431	9.2739	5	1	Median	1.195	0.98981	NaN	1	0	Median	0.84351	0.99821	17.664	2	1	Median	1.0945	1.0431	NaN	1	0	Median	0.99768	1.0518	NaN	1	0	Median	938140000	437580000	500560000	167160000	65521000	101640000	226300000	100570000	125730000	323600000	161930000	161660000	221080000	109560000	111530000	42832	1357	40323	260664;260665;260666;260667;260668	349499;349500;349501;349502;349503;349504;349505;349506;349507;349508;349509	349501			11	
QVTSSGVSHGGTVSLQDAVTR	0	Unmodified	2085.0451	0.045059297	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	40.687	40.204	3	1.8307E-07	34381	160511_QHF_FH_JSI12i_3	76.492	66.802			1.0247	1.2654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0247	1.2654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34327000	6704200	27623000	0	0	0	14420000	6704200	7715700	19907000	0	19907000	0	0	0	42833	620	40324	260669;260670;260671;260672	349510;349511;349512;349513	349512			4	
QVTVLELFR	0	Unmodified	1103.6339	0.63389451	987	P11169;Q8TDB8	SLC2A3;SLC2A14	Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.55	6.72		4	1					2	4	3	3	3	2	84.875	79.731	2	2.3851E-17	42786	160513_QHF_FH_JSI10Kac_6	174.02	118.49			1.0334	1.0253	16.251	11	0	Median	1.1938	1.0253	1.7027	3	0	Plateau	0.70784	0.8385	2.68	3	0	Median	1.0334	1.005	20.434	3	0	Plateau	1.0043	1.1113	3.2951	2	0	Median	1125800000	551380000	574420000	196520000	77920000	118600000	369360000	213060000	156300000	338470000	155270000	183200000	221440000	105120000	116320000	42834	987	40325	260673;260674;260675;260676;260677;260678;260679;260680;260681;260682;260683	349514;349515;349516;349517;349518;349519;349520;349521;349522;349523;349524;349525;349526;349527;349528;349529;349530;349531;349532;349533	349532			20	
QVVAKAPVK	2	Acetyl (K)	980.60187	0.6018661	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0						4				1	1	1	1	30.241	19.305	2	1.8958E-05	5818	160513_QHF_FH_JSI9Kac_3	130.27	68.309			0.74947	0.81283	17.245	4	0	Median	1.3168	1.0365	NaN	1	0	Median	0.75615	0.90019	NaN	1	0	Median	0.74285	0.73394	NaN	1	0	Median	0.6577	0.7241	NaN	1	0	Median	82737000	43053000	39684000	29218000	14392000	14826000	16362000	8266100	8096300	12941000	7338100	5602800	24216000	13057000	11159000	42835	2586	40326	260684;260685;260686;260687	349534;349535;349536;349537	349535	2567		4	
QVVAVTGDGTNDGPALK	1	Unmodified	1640.837	0.836964	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	44.788	43.184	2;3	7.4419E-22	39172	160511_QHF_FH_JSI12i_1	208.27	160.67			1.0231	0.99005	12.51	9	0	Median	1.0367	0.85145	0.96875	2	0	Median	0.86004	1.0069	25.652	2	0	Median	1.0179	0.99169	0.23452	2	0	Median	0.99404	1.0609	9.0224	3	0	Median	918280000	480220000	438060000	199320000	88757000	110570000	244930000	125460000	119480000	249420000	147990000	101420000	224610000	118010000	106590000	42836	1239;1168;2177;2758	40327	260688;260689;260690;260691;260692;260693;260694;260695;260696;260697	349538;349539;349540;349541;349542;349543;349544;349545;349546;349547;349548;349549;349550;349551	349540			14	
QVVDCQLADVNNIGK	1	Unmodified	1671.825	0.82501911	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		55.461	55.049	2	0.00040973	49879	160511_QHF_FH_JSI11i_1	92.906	69.53			0.66371	0.65155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66371	0.65155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41266000	21121000	20146000	0	0	0	0	0	0	41266000	21121000	20146000	0	0	0	42837	1313	40328	260698	349552	349552			1	
QVVEEPSPQLPADK	1	Unmodified	1535.7831	0.78313752	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	44.396	43.647	2	1.164E-06	38617	160511_QHF_FH_JSI9i_1	134.98	106.77			0.81368	0.83279	19.972	3	0	Median	1.3139	1.0785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77893	0.7281	NaN	1	0	Median	0.81368	0.83279	NaN	1	0	Median	200080000	92780000	107300000	71987000	32031000	39956000	0	0	0	70129000	36568000	33561000	57959000	24181000	33778000	42838	1772	40329	260699;260700;260701	349553;349554;349555	349554			2	
QVVEQDEEEDEELTLK	1	Unmodified	1931.8848	0.88476164	1681	P49768	PSEN1	Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	49.59	48.924	2	3.4468E-17	44491	160511_QHF_FH_JSI12i_1	127.37	104.84			1.2484	1.2485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2484	1.2485	NaN	1	1	Median	16771000	5017200	11754000	0	0	0	0	0	0	0	0	0	16771000	5017200	11754000	42839	1681	40330	260702;260703;260704	349556;349557;349558	349557			3	
QVVESAYEVIK	1	Unmodified	1263.6711	0.67106787	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.72	4	4	2	1	4	5	4	4	4	8	9	8	7	55.481	48.294	2	4.3318E-48	44360	160511_QHF_FH_JSI9i_1	221.52	183.96			0.9044	0.94809	23.031	29	6	Median	1.0975	1.0279	19.333	6	2	Median	0.79744	0.91504	17.645	8	3	Median	0.94591	0.91628	35.997	8	1	Median	0.88087	0.96806	14.162	7	0	Median	35208000000	15451000000	19757000000	8495300000	3228600000	5266700000	9738200000	4881400000	4856800000	10005000000	3924600000	6080500000	6968900000	3416100000	3552800000	42840	761	40331	260705;260706;260707;260708;260709;260710;260711;260712;260713;260714;260715;260716;260717;260718;260719;260720;260721;260722;260723;260724;260725;260726;260727;260728;260729;260730;260731;260732;260733;260734;260735;260736	349559;349560;349561;349562;349563;349564;349565;349566;349567;349568;349569;349570;349571;349572;349573;349574;349575;349576;349577;349578;349579;349580;349581;349582;349583;349584;349585;349586;349587;349588;349589;349590;349591;349592;349593;349594;349595;349596;349597;349598;349599;349600;349601;349602;349603;349604;349605;349606;349607;349608;349609;349610;349611;349612;349613;349614;349615;349616;349617;349618;349619;349620;349621;349622;349623;349624;349625;349626	349600			68	
QVVESVGNQMGVGK	1	Unmodified	1430.7188	0.71876312	4483	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.719	37.106	2	1.4345E-15	33420	160511_QHF_FH_JSI11i_1	168.22	65.674			0.87993	0.84892	34.607	4	2	Median	1.1012	0.88336	NaN	1	1	Median	0.70314	0.81583	NaN	1	0	Median	0.55531	0.51784	NaN	1	0	Median	1.1457	1.1961	NaN	1	1	Median	211110000	117530000	93584000	38930000	20704000	18226000	39256000	19406000	19850000	69736000	45888000	23849000	63189000	31530000	31659000	42841	4483	40332	260737;260738;260739;260740	349627;349628;349629;349630;349631;349632	349628			6	
QVVIGGR	0	Unmodified	727.43407	0.43407249	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		14.412	14.189	2	0.035694	11267	160511_QHF_FH_JSI11i_2	50.539	29.679			1.2092	1.2222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2092	1.2222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142150000	74030000	68120000	0	0	0	0	0	0	142150000	74030000	68120000	0	0	0	42842	679	40333	260741	349633	349633			1	
QVVILSQDSFYR	0	Unmodified	1453.7565	0.75652884	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.97	1	5							1	2	3	1	1	68.036	66.128	2	8.1236E-05	57081	160511_QHF_FH_JSI12i_2	93.258	46.071			0.96773	1.058	27.408	7	5	Median	1.1437	0.97548	55.768	2	1	Median	1.0798	1.2419	23.726	3	3	Median	0.96561	0.98049	NaN	1	1	Median	0.96773	1.058	NaN	1	0	Median	354360000	174200000	180160000	70420000	35862000	34558000	138210000	65440000	72774000	84009000	43374000	40635000	61715000	29524000	32191000	42843	4574	40334	260742;260743;260744;260745;260746;260747;260748	349634;349635;349636;349637;349638;349639;349640;349641;349642	349635			9	
QVVMAVLEALTGVLR	0	Unmodified	1597.9225	0.92254831	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	3	2	100.78	93.059	2;3	2.079E-74	55484	160513_QHF_FH_JSI10Kac_6	225.23	195.48			1.0002	1.0336	27.355	8	0	Median	1.7079	1.4752	15.833	2	0	Median	0.75299	0.90373	NaN	1	0	Median	0.85786	0.82529	20.037	3	0	Median	1.0002	1.0592	0.88278	2	0	Median	411600000	205190000	206410000	123680000	58131000	65545000	95676000	54724000	40953000	72591000	36294000	36298000	119660000	56042000	63619000	42844	3741	40335	260749;260750;260751;260752;260753;260754;260755;260756;260757	349643;349644;349645;349646;349647;349648;349649;349650;349651;349652;349653;349654;349655	349653			13	
QVVNFGPGPAK	1	Unmodified	1112.5978	0.59784335	5697	Q9Y617	PSAT1	Phosphoserine aminotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.65	6.3	2	4	2				4	5		3	6	4	4	42	36.49	2	1.5926E-18	31304	160511_QHF_FH_JSI11i_2	166.52	133.91			1.0634	1.0553	17.544	16	3	Median	1.2298	1.0427	3.4212	3	0	Plateau	0.84877	0.9598	25.627	5	3	Median	1.2063	1.2014	16.187	4	0	Median	0.98114	1.0431	14.928	4	0	Median	1411000000	719220000	691820000	247580000	113500000	134080000	364790000	203170000	161620000	456680000	233290000	223380000	342000000	169260000	172730000	42845	5697	40336	260758;260759;260760;260761;260762;260763;260764;260765;260766;260767;260768;260769;260770;260771;260772;260773;260774	349656;349657;349658;349659;349660;349661;349662;349663;349664;349665;349666;349667;349668;349669;349670;349671;349672;349673;349674;349675;349676;349677	349669			18	
QVVNIPSFIVR	0	Unmodified	1270.7398	0.73975656	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.61	3	4	4					3	4	4	5	5	4	81.897	77.935	2	8.5351E-30	71383	160511_QHF_FH_JSI9i_2	191.85	174.62			0.90238	0.96556	14.667	18	1	Median	1.2958	1.0552	18.791	4	0	Median	0.81096	0.96925	10.782	5	0	Median	0.87584	0.87762	9.6213	5	1	Median	0.81345	0.87684	11.082	4	0	Median	11689000000	5964300000	5725000000	1632500000	686200000	946250000	2614700000	1467100000	1147600000	3589800000	1810000000	1779800000	3852400000	2001000000	1851400000	42846	1593	40337	260775;260776;260777;260778;260779;260780;260781;260782;260783;260784;260785;260786;260787;260788;260789;260790;260791;260792	349678;349679;349680;349681;349682;349683;349684;349685;349686;349687;349688;349689;349690;349691;349692;349693;349694;349695;349696;349697;349698;349699;349700;349701;349702;349703;349704;349705;349706;349707;349708;349709;349710;349711;349712;349713;349714;349715;349716	349699			39	
QVVNQVWEAADVLIK	1	Unmodified	1710.9305	0.93047046	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	99.224	99.051	2	0.00011079	85296	160511_QHF_FH_JSI12i_2	100.38	74.259			0.78972	0.85191	43.777	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.29568	0.36774	NaN	1	1	Median	0.70831	0.69298	NaN	1	1	Median	0.78972	0.85191	NaN	1	0	Median	173890000	112410000	61478000	0	0	0	68376000	53335000	15041000	48901000	27596000	21305000	56612000	31480000	25132000	42847	3290	40338	260793;260794;260795	349717;349718;349719	349717			3	
QVVPFSSSV	0	Unmodified	948.49165	0.49164694	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	5									1	2	1	1	62.029	61.442	1;2	0.00068606	55913	160511_QHF_FH_JSI12i_1	76.035	67.262			1.0834	1.0822	10.384	5	0	Median	1.3095	1.0822	NaN	1	0	Median	0.80828	0.95365	8.3528	2	0	Median	1.2108	1.1786	NaN	1	0	Median	1.0834	1.1129	NaN	1	0	Median	377670000	191920000	185750000	94078000	36945000	57133000	108830000	57791000	51036000	74444000	37474000	36970000	100320000	59709000	40608000	42848	5536	40339	260796;260797;260798;260799;260800	349720;349721;349722	349720			2	
QVVPFVYQTIVK	1	Unmodified	1419.8126	0.81258715	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	82.651	81.782	2	0.00025262	72001	160511_QHF_FH_JSI11i_2	93.096	73.825			0.94393	0.98424	9.6437	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92435	0.91936	NaN	1	0	Median	0.96392	1.0537	NaN	1	1	Median	54888000	30683000	24205000	0	0	0	0	0	0	32298000	18472000	13827000	22590000	12212000	10378000	42849	3482	40340	260801;260802;260803	349723;349724;349725;349726	349726			4	
QVVQATAEQMR	0	Unmodified	1259.6292	0.62921983	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	23.059	22.311	2	6.3972E-06	19689	160511_QHF_FH_JSI12i_1	104.42	83.553			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42850	2950	40341	260804;260805	349727;349728	349727			2	
QVVQGLLSETYLEAHR	0	Unmodified	1841.9636	0.9635615	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	3	3	3	3	69.731	66.824	2;3	2.6291E-65	59829	160511_QHF_FH_JSI11i_3	229.54	169.11			0.95426	0.96352	11.752	11	3	Median	1.1538	0.99352	4.3355	2	2	Median	0.80003	0.91151	12.829	3	1	Plateau	0.95426	0.92216	14.209	3	0	Plateau	0.88053	0.9023	15.276	3	0	Median	1906800000	951310000	955470000	284850000	124720000	160130000	434190000	247250000	186940000	710480000	329130000	381350000	477270000	250210000	227060000	42851	1411	40342	260806;260807;260808;260809;260810;260811;260812;260813;260814;260815;260816;260817	349729;349730;349731;349732;349733;349734;349735;349736;349737;349738;349739;349740;349741;349742;349743;349744	349732			15	
QVVQTPNTVLSTPFR	0	Unmodified	1685.9101	0.91006937	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.33	4.82	1	2	2					1			1	4	1	70.297	68.105	2	1.1386E-06	58992	160511_QHF_FH_JSI12i_2	143.79	98.429			1.2022	1.2193	36.078	6	4	Median	NaN	NaN	NaN	0	0	Median	0.85936	1.0507	NaN	1	0	Median	1.2853	1.2193	45.311	4	3	Median	1.1679	1.331	NaN	1	1	Median	206230000	93841000	112390000	0	0	0	44662000	25684000	18979000	108530000	40003000	68523000	53039000	28155000	24884000	42852	4271	40343	260818;260819;260820;260821;260822;260823	349745;349746;349747;349748;349749;349750;349751;349752	349749			8	
QVVSELAECVR	0	Unmodified	1288.6445	0.64453555	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.907	45.403	2	0.010764	39082	160511_QHF_FH_JSI11i_2	46.462	23.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42853	1892	40344	260824	349753	349753			1	
QVVTGTVLTR	0	Unmodified	1072.6241	0.6240581	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		34.163	33.362	2	0.0018127	28321	160511_QHF_FH_JSI11i_2	74.464	50.492			1.1021	1.1209	17.709	3	0	Median	1.3049	1.1209	NaN	1	0	Median	0.68886	0.84297	NaN	1	0	Median	1.1021	1.1663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94675000	48062000	46613000	24665000	10596000	14070000	31951000	18902000	13050000	38058000	18564000	19494000	0	0	0	42854	3819	40345	260825;260826;260827	349754;349755;349756;349757;349758	349756			5	
QVVTVVFER	0	Unmodified	1075.6026	0.60259438	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	62.26	51.488	2	0.0057126	26182	160513_QHF_FH_JSI10Kac_5	64.265	7.0871			1.245	1.3307	18.581	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1089	1.3307	NaN	1	0	Median	1.245	1.1979	NaN	1	0	Median	1.5279	1.7191	NaN	1	0	Median	16120000	7439300	8680400	0	0	0	7628800	3694600	3934200	3594800	1712500	1882400	4896100	2032200	2863900	42855	3262	40346	260828;260829;260830	349759;349760;349761	349761			3	
QVWGEVPEPSDRSEEPETPAAYR	0	Unmodified	2628.2092	0.20922409	2830	Q4G0I0	CCSMST1	Protein CCSMST1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		57.285	56.782	3	0.0059091	49217	160511_QHF_FH_JSI11i_2	40.381	37.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42856	2830	40347	260831	349762	349762			1	
QVWGLNFGSK	1	Unmodified	1134.5822	0.58219329	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	66.251	65.484	2	7.763E-11	56528	160511_QHF_FH_JSI12i_3	143.37	124.6			1.0822	1.1599	20.658	5	1	Median	1.6321	1.2968	NaN	1	0	Median	1.0213	1.1599	NaN	1	0	Median	1.0243	0.99871	34.97	2	1	Median	1.0822	1.1062	NaN	1	0	Median	789910000	289900000	500020000	50485000	11832000	38654000	128810000	52861000	75949000	315350000	133100000	182250000	295270000	92102000	203170000	42857	1710	40348	260832;260833;260834;260835;260836	349763;349764;349765;349766;349767;349768	349768			6	
QVYATMPINSFR	0	Unmodified	1425.7075	0.70747015	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		63.596	62.908	2	0.0023481	54821	160511_QHF_FH_JSI11i_2	70.977	52.665			0.99088	1.097	4.0512	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8696	1.066	NaN	1	0	Median	1.1291	1.1288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84945000	42596000	42349000	0	0	0	31502000	16549000	14953000	53444000	26047000	27396000	0	0	0	42858	5482	40349	260837;260838	349769;349770	349769			1	
QVYDAHTK	1	Unmodified	960.46649	0.46649483	2202	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.81	2	8						1		2	2	5	2	6.4439	5.1574	2;3	0.0011086	3792	160511_QHF_FH_JSI11i_2	61.78	55.998			0.95281	0.98958	16.558	10	0	Median	1.1455	0.98506	4.7342	2	0	Median	0.84514	1.028	12.205	2	0	Median	1.0062	0.99421	25.742	4	0	Median	0.89885	0.99027	8.0235	2	0	Median	1791700000	861240000	930480000	319670000	152050000	167620000	337270000	191920000	145350000	784920000	355460000	429470000	349860000	161820000	188040000	42859	2202	40350	260839;260840;260841;260842;260843;260844;260845;260846;260847;260848;260849	349771;349772;349773;349774;349775;349776;349777;349778;349779;349780;349781	349778			11	
QVYDGFSFIGNTGPYEVSK	1	Unmodified	2106.9898	0.98983583	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								1	3	3	5	85.383	84.951	2;3	1.4021E-67	77151	160511_QHF_FH_JSI10i_1	192.4	161.58			0.93067	0.89649	18.944	7	4	Median	NaN	NaN	NaN	0	0	Median	0.6838	0.78739	2.242	2	1	Median	1.1173	1.0712	25.182	2	0	Median	1.0364	1.0333	15.115	3	3	Plateau	135620000	71945000	63672000	0	0	0	50439000	30420000	20019000	45308000	20913000	24395000	39870000	20612000	19258000	42860	4292	40351	260850;260851;260852;260853;260854;260855;260856;260857;260858;260859;260860;260861	349782;349783;349784;349785;349786;349787;349788;349789;349790;349791;349792;349793;349794;349795;349796;349797	349795			16	
QVYDIAAK	1	Unmodified	906.48108	0.48108226	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	26.61	26.036	2	0.0029476	22878	160511_QHF_FH_JSI11i_1	83.168	46.192			1.1383	1.1407	9.937	4	2	Median	1.3652	1.1243	NaN	1	0	Median	1.1635	1.3559	NaN	1	1	Median	1.1136	1.0811	NaN	1	1	Median	1.0808	1.1573	NaN	1	0	Median	387900000	190470000	197430000	93410000	40381000	53030000	97614000	52295000	45319000	89772000	42859000	46913000	107100000	54937000	52165000	42861	93	40352	260862;260863;260864;260865;260866;260867	349798;349799;349800;349801;349802;349803	349798			6	
QVYEEEYGSSLEDDVVGDTSGYYQR	0	Unmodified	2887.2308	0.23080697	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	1	2	2	76.13	75.558	2;3	4.4197E-167	68528	160511_QHF_FH_JSI11i_1	378.47	378.47			1.118	1.0427	8.3714	7	1	Median	1.262	1.0226	8.353	2	0	Median	0.82001	0.96035	NaN	1	0	Median	1.0418	1.0173	3.4839	2	0	Median	1.1252	1.1673	0.93076	2	1	Median	1441800000	659090000	782740000	139150000	39930000	99221000	350660000	167550000	183110000	396970000	196810000	200160000	555050000	254800000	300250000	42862	916	40353	260868;260869;260870;260871;260872;260873;260874;260875	349804;349805;349806;349807;349808;349809;349810;349811;349812;349813;349814;349815;349816;349817;349818;349819;349820;349821	349808			18	
QVYGLNFGSK	1	Unmodified	1111.5662	0.56620887	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	52.289	51.071	2	0.050467	43599	160511_QHF_FH_JSI12i_2	42.718	18.762			1.2606	1.2339	3.0571	2	0	Median	1.4807	1.2608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0732	1.2075	NaN	1	0	Median	153670000	82271000	71401000	60302000	26785000	33517000	0	0	0	0	0	0	93370000	55486000	37884000	42863	3570	40354	260876;260877	349822	349822			1	
QVYIPNYNKPNPNQISVNNVK	2	Unmodified	2442.2656	0.26555718	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			60.79	59.266	3	2.6354E-06	49668	160511_QHF_FH_JSI10i_3	73.809	56.879			1.1241	1.3236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1241	1.3236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15830000	7134200	8695700	0	0	0	15830000	7134200	8695700	0	0	0	0	0	0	42864	2389	40355	260878	349823;349824	349824			2	
QVYIPTYTK	1	Unmodified	1111.5914	0.59136099	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		48.162	47.343	2	0.0039506	42105	160511_QHF_FH_JSI9i_1	68.846	39.373			0.4286	0.38377	19.232	2	2	Median	0.53351	0.43968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34433	0.33498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	201290000	128400000	72887000	75586000	45273000	30313000	0	0	0	125700000	83128000	42573000	0	0	0	42865	606	40356	260879;260880	349825;349826	349826			2	
QVYIPTYTKPNPNQIISVGSK	2	Unmodified	2346.2583	0.25834654	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	1	1	2	73.272	72.444	3	1.2767E-05	60640	160511_QHF_FH_JSI10i_3	65.784	57.695			0.92741	0.8562	10.145	6	4	Median	1.0348	0.8562	5.2045	2	2	Median	0.69827	0.811	NaN	1	0	Median	1.135	1.0433	NaN	1	0	Median	0.81849	0.85603	10.075	2	2	Median	123900000	63954000	59947000	29641000	14890000	14752000	19593000	11701000	7891200	38896000	18065000	20831000	35771000	19298000	16473000	42866	606	40357	260881;260882;260883;260884;260885;260886;260887	349827;349828;349829;349830;349831;349832;349833;349834;349835;349836	349830			10	
QVYQIVK	1	Unmodified	876.5069	0.50690308	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.85	3	2	1				3			3	1	2	3	32.359	28.5	2	0.0071107	25636	160511_QHF_FH_JSI12i_1	88.643	49.621			1.3037	1.3496	50.818	9	5	Median	1.2985	1.0675	12.485	3	1	Median	1.3415	1.5246	NaN	1	1	Median	1.0016	0.97592	102.49	2	1	Median	1.3037	1.4164	44.213	3	2	Median	501980000	257450000	244530000	212060000	107590000	104470000	2629500	1165900	1463600	95914000	61771000	34142000	191370000	86921000	104450000	42867	4943	40358	260888;260889;260890;260891;260892;260893;260894;260895;260896	349837;349838;349839;349840;349841;349842;349843;349844;349845	349839			9	
QVYSVPHFFLAGAAK	1	Unmodified	1633.8617	0.86166261	245	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.864	74.07	3	2.7887E-05	64032	160511_QHF_FH_JSI12i_3	98.676	90.5			1.1145	1.0651	8.3057	4	0	Median	1.3936	1.1231	NaN	1	0	Median	0.84331	0.97315	NaN	1	0	Median	1.0977	1.0102	NaN	1	0	Median	1.1316	1.1577	NaN	1	0	Median	253400000	126120000	127280000	31053000	13537000	17515000	41590000	24655000	16935000	69330000	34824000	34506000	111430000	53106000	58323000	42868	245	40359	260897;260898;260899;260900	349846;349847;349848;349849;349850;349851;349852	349852			6	
QWADDWLVHLISPNVYR	0	Unmodified	2111.0589	0.058858868	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			94.818	87.451	3	1.3726E-05	51121	160513_QHF_FH_JSI10Kac_6	93.39	84.571			1.4925	1.4781	21.669	2	1	Median	2.048	1.7229	NaN	1	1	Median	1.0876	1.2681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164870000	72534000	92334000	58572000	19270000	39302000	106300000	53264000	53032000	0	0	0	0	0	0	42869	4773	40360	260901;260902	349853;349854	349854			2	
QWDSVVLER	0	Unmodified	1130.572	0.57202253	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	32.442	31.447	3	0.055364	26646	160511_QHF_FH_JSI12i_2	12.616	2.9608			0.98394	0.96064	8.4667	6	0	Linear	1.4043	1.2162	NaN	1	0	Median	0.79644	0.99532	0	2	0	Median	0.965	0.98595	NaN	1	0	Median	1.0032	1.1079	0	2	0	Median	543470000	280910000	262560000	42784000	13586000	29198000	207850000	115310000	92533000	138980000	74964000	64017000	153860000	77044000	76816000	42870	4387	40361	260903;260904;260905;260906;260907;260908	349855;349856;349857	349855			3	
QWFINITDIK	1	Unmodified	1276.6816	0.68157298	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		2	2						4	2	2	2	2	90.769	86.257	2	6.7107E-44	41900	160513_QHF_FH_JSI12Kac_6	205.09	152.52			0.97848	0.99829	51.952	8	3	Median	1.183	0.99829	2.6105	2	0	Median	0.44881	0.5382	107.55	2	1	Median	1.1767	1.1331	23.401	2	1	Median	0.92608	1.0004	3.7448	2	1	Median	1255600000	783960000	471620000	173660000	88060000	85595000	479070000	371250000	107820000	302630000	156000000	146630000	300220000	168650000	131580000	42871	4983	40362	260909;260910;260911;260912;260913;260914;260915;260916	349858;349859;349860;349861;349862;349863;349864;349865;349866;349867;349868	349866			11	
QWGWTQGR	0	Unmodified	1017.4781	0.47806257	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	3	1	1	39.017	37.986	2	0.00012323	31677	160511_QHF_FH_JSI10i_3	127.12	108.39			0.77496	0.9515	19.437	5	1	Median	1.2195	1.0203	9.8782	2	0	Median	0.77016	0.92516	4.8088	2	1	Median	NaN	NaN	NaN	0	0	Median	0.65445	0.64979	NaN	1	0	Median	1064500000	516790000	547740000	474770000	192410000	282360000	436020000	238350000	197670000	0	0	0	153740000	86036000	67699000	42872	1143	40363	260917;260918;260919;260920;260921;260922;260923	349869;349870;349871;349872;349873;349874;349875;349876;349877;349878;349879;349880	349871			12	
QWIQISDAVYHMVYEQAK	1	Unmodified	2208.0674	0.067374644	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	2	1	2	2	94.034	89.287	3	8.7828E-73	43141	160513_QHF_FH_JSI12Kac_6	217.26	190.67			1.0156	1.0367	31.333	7	2	Median	0.86856	0.74263	47.184	2	1	Median	0.83258	0.99579	NaN	1	0	Median	0.85486	0.8094	39.044	2	1	Median	1.0877	1.1274	7.814	2	0	Median	1144700000	628360000	516340000	216550000	97983000	118570000	426310000	263890000	162420000	190350000	119920000	70430000	311480000	146570000	164910000	42873	4260	40364	260924;260925;260926;260927;260928;260929;260930	349881;349882;349883;349884;349885;349886;349887;349888;349889;349890;349891;349892	349890			12	
QWLADALK	1	Unmodified	943.51272	0.51271674	4562	Q9BZG1	RAB34	Ras-related protein Rab-34	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	58.764	57.425	2	0.0019818	50834	160511_QHF_FH_JSI10i_2	81.191	9.4758			1.7771	1.9447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7771	1.9447	NaN	1	1	Median	55867000	19877000	35990000	0	0	0	0	0	0	0	0	0	55867000	19877000	35990000	42874	4562	40365	260931;260932	349893;349894	349894			2	
QWLDLHLHQEIPTSLLILSR	0	Unmodified	2411.3325	0.33251453	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			90.467	84.746	3;4	1.4369E-06	48200	160513_QHF_FH_JSI10Kac_6	80.277	65.663			1.026	1.2091	4.3238	2	0	Median	NaN	NaN	NaN	0	0	Median	1.026	1.2091	4.3238	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159570000	76109000	83462000	0	0	0	159570000	76109000	83462000	0	0	0	0	0	0	42875	655	40366	260933;260934	349895;349896	349896			2	
QWLIDTLYAFNSGNVER	0	Unmodified	2024.9956	0.99558991	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.346	86.626	2	5.1998E-24	49582	160513_QHF_FH_JSI10Kac_6	159.22	129.16			0.71608	0.85335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71608	0.85335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76420000	50215000	26205000	0	0	0	76420000	50215000	26205000	0	0	0	0	0	0	42876	5441	40367	260935	349897	349897			1	
QWLMTEALVNNPK	1	Unmodified	1542.7864	0.78644876	1315	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.78	74.904	2	1.0148E-06	65688	160511_QHF_FH_JSI11i_2	127.42	81.427			1.2129	1.2704	32.322	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0997	1.2981	NaN	1	1	Median	1.2129	1.2704	NaN	1	0	Median	0.66804	0.73388	NaN	1	1	Median	69557000	37060000	32497000	0	0	0	17248000	8652700	8595400	37509000	19862000	17647000	14800000	8545400	6254700	42877	1315	40368	260936;260937;260938	349898;349899;349900;349901	349899			4	
QWLNSGHINDVR	0	Unmodified	1437.7113	0.71130998	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		3	0			4							1	2	1		37.967	36.979	3	0.017925	30652	160511_QHF_FH_JSI10i_3	40.093	33.674			0.87713	1.0105	48.558	3	1	Median	1.9784	1.6071	NaN	1	0	Median	0.87713	1.0105	NaN	1	0	Median	0.62775	0.60872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142880000	77229000	65650000	26667000	11447000	15220000	52403000	25470000	26933000	63809000	40312000	23497000	0	0	0	42878	227	40369	260939;260940;260941;260942	349902;349903;349904	349903			3	
QWLQEIDR	0	Unmodified	1086.5458	0.54580778	2020;4642	Q9H0U4;Q92928;P62820	RAB1B;RAB1C;RAB1A	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	3	1	48.458	47.671	2	8.9387E-05	42046	160511_QHF_FH_JSI10i_2	131.06	49.765			0.80152	0.89755	10.712	5	0	Median	0.9941	0.84245	NaN	1	0	Median	0.76224	0.95725	NaN	1	0	Median	0.8164	0.80582	15.246	2	0	Median	0.80152	0.9021	NaN	1	0	Median	1780300000	1028000000	752250000	316010000	183630000	132370000	311510000	177850000	133660000	685680000	399600000	286080000	467100000	266970000	200120000	42879	4642;2020	40370	260943;260944;260945;260946;260947;260948	349905;349906;349907;349908;349909;349910;349911;349912;349913;349914	349914			10	
QWLQEIDRYASENVNK	1	Unmodified	1991.9701	0.97010344	2020;4642	Q9H0U4;P62820	RAB1B;RAB1A	Ras-related protein Rab-1B;Ras-related protein Rab-1A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	3	2	67.631	66.944	2;3	1.9131E-29	59315	160511_QHF_FH_JSI11i_3	231.06	211.4			1.1114	1.1477	18.029	9	1	Median	1.1114	0.9557	NaN	1	0	Median	0.95144	1.1827	25.929	3	1	Median	1.2383	1.1882	2.4463	3	0	Median	0.87659	0.92116	11.284	2	0	Median	3456000000	1597800000	1858200000	477160000	209260000	267890000	935220000	496460000	438760000	1587700000	641210000	946470000	455920000	250890000	205030000	42880	4642;2020	40371	260949;260950;260951;260952;260953;260954;260955;260956;260957	349915;349916;349917;349918;349919;349920;349921;349922;349923;349924;349925;349926;349927;349928;349929;349930	349917			16	
QWLQEVK	1	Unmodified	929.49707	0.49706667	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.71	3	4	2					3		2	3	3	4	40.712	37.426	2	6.4026E-09	32148	160511_QHF_FH_JSI11i_2	157.52	80.924			0.82692	0.89116	23.748	11	0	Median	0.8499	0.72727	NaN	1	0	Median	0.80737	0.94633	8.8664	3	0	Plateau	0.8185	0.8572	19.852	3	0	Plateau	0.90089	0.96101	37.41	4	0	Median	2616200000	1361500000	1254800000	336730000	161070000	175660000	733860000	414720000	319130000	948370000	481670000	466700000	597270000	304000000	293270000	42881	773	40372	260958;260959;260960;260961;260962;260963;260964;260965;260966;260967;260968;260969	349931;349932;349933;349934;349935;349936;349937;349938;349939;349940;349941;349942;349943;349944;349945;349946;349947;349948;349949;349950;349951;349952	349947			22	
QWLVSIHAIR	0	Unmodified	1221.6982	0.6982261	1668	P49593	PPM1F	Protein phosphatase 1F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	71.459	62.907	2;3	6.5262E-13	34200	160513_QHF_FH_JSI11Kac_6	135.86	97.108			1.0607	0.92514	26.696	5	0	Median	1.0607	0.92514	NaN	1	0	Median	0.72536	0.8564	2.6993	2	0	Median	1.5322	1.4735	NaN	1	0	Median	1.2812	1.3717	NaN	1	0	Median	776330000	417080000	359250000	76327000	38552000	37775000	440590000	263530000	177060000	121860000	48990000	72872000	137550000	66007000	71543000	42882	1668	40373	260970;260971;260972;260973;260974	349953;349954;349955;349956;349957;349958;349959;349960;349961	349953			9	
QWNNCAFLESSAK	1	Unmodified	1553.6933	0.69327665	1946	P61224;A6NIZ1	RAP1B	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	3	2	53.765	52.94	2	9.3343E-16	45624	160511_QHF_FH_JSI11i_2	166.14	149.89			1.2368	1.4136	89.86	6	4	Median	1.8072	1.566	NaN	1	1	Median	1.1401	1.4168	NaN	1	1	Median	1.0815	1.0753	38.362	2	1	Median	0.45677	0.48814	160.28	2	1	Median	307890000	182290000	125600000	19443000	4650300	14792000	29795000	12807000	16989000	93359000	51783000	41576000	165290000	113050000	52240000	42883	1946	40374	260975;260976;260977;260978;260979;260980;260981	349962;349963;349964;349965;349966;349967;349968;349969;349970	349968			9	
QWNVNWEIK	1	Unmodified	1215.6037	0.60365701	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	1	2	2	68.82	67.925	2	8.7737E-50	34713	160513_QHF_FH_JSI12Kac_6	210.37	133.31			1.304	1.4411	20.247	4	0	Median	2.4311	2.1253	NaN	1	0	Median	1.1849	1.4668	NaN	1	0	Median	1.3808	1.3836	NaN	1	0	Median	1.2314	1.4159	NaN	1	0	Median	319480000	146340000	173140000	57587000	16825000	40762000	112490000	57526000	54961000	83342000	35682000	47660000	66068000	36311000	29757000	42884	3965	40375	260982;260983;260984;260985;260986;260987	349971;349972;349973;349974;349975;349976	349976			5	
QWQGLSSK	1	Unmodified	932.47158	0.4715802	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.915	23.891	2	0.014809	19730	160511_QHF_FH_JSI12i_3	60.478	43.092			2.082	2.1345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.082	2.1345	NaN	1	1	Median	25776000	11183000	14593000	0	0	0	0	0	0	0	0	0	25776000	11183000	14593000	42885	2989	40376	260988	349977	349977			1	
QWQYDANPFLQSVHR	0	Unmodified	1887.9016	0.90162994	4220	Q96RN5	MED15	Mediator of RNA polymerase II transcription subunit 15	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	70.312	70.163	3	0.00033581	60867	160511_QHF_FH_JSI12i_3	60.918	58.367			0.93989	0.90231	1.7262	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98786	0.89136	NaN	1	0	Median	0.89424	0.91339	NaN	1	0	Median	86646000	51101000	35546000	0	0	0	0	0	0	40197000	26541000	13657000	46449000	24560000	21889000	42886	4220	40377	260989;260990;260991	349978;349979	349978			2	
QWSHISESAK	1	Unmodified	1171.5622	0.56218613	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	16.035	16.069	2;3	0.0019919	12810	160511_QHF_FH_JSI12i_3	50.207	44.389			1.9937	1.9137	4.7607	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0015	1.8504	NaN	1	0	Median	1.9859	1.9793	NaN	1	0	Median	154300000	60697000	93601000	0	0	0	0	0	0	44159000	16159000	28000000	110140000	44538000	65601000	42887	221	40378	260992;260993;260994	349980;349981;349982;349983	349982			4	
QWTSMMEGLPSVATQEANMHK	1	Unmodified	2375.0708	0.070821817	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.658	78.658	3	7.8176E-09	70231	160511_QHF_FH_JSI11i_3	98.543	83.289			1.7912	1.6934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7912	1.6934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22894000	7498000	15396000	0	0	0	0	0	0	22894000	7498000	15396000	0	0	0	42888	5464	40379	260995	349984;349985;349986;349987	349986			4	
QWVAAGGHITFK	1	Unmodified	1313.6881	0.68805534	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			6						9	5	4	3	3	55.798	50.018	2;3	4.6087E-13	27416	160513_QHF_FH_JSI10Kac_6	103.97	88.436			1.0159	0.94613	17.062	14	4	Median	1.074	0.89055	17.194	4	2	Median	0.75084	0.88815	3.5646	4	1	Median	1.0291	0.98141	8.8969	3	0	Median	1.2435	1.2089	11.84	3	1	Plateau	1866500000	997490000	869060000	487100000	252270000	234830000	552250000	319380000	232870000	434360000	211250000	223100000	392840000	214580000	178260000	42889	4996	40380	260996;260997;260998;260999;261000;261001;261002;261003;261004;261005;261006;261007;261008;261009;261010	349988;349989;349990;349991;349992;349993;349994;349995;349996;349997;349998;349999;350000;350001;350002;350003;350004	350002			17	
QWVESSPK	1	Unmodified	959.47125	0.47124585	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			21.086	20.266	2	0.054734	17418	160511_QHF_FH_JSI10i_2	45.081	21.109			0.28035	0.34907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28035	0.34907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10820000	8487500	2332600	0	0	0	10820000	8487500	2332600	0	0	0	0	0	0	42890	3024	40381	261011	350005	350005			1	
QWVIPWHLNK	1	Unmodified	1319.7139	0.71387616	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.19		1	7						4	5	3	2	2	79.261	74.743	3	2.4793E-12	67320	160511_QHF_FH_JSI12i_3	130.66	126.32			0.91438	0.93999	16.102	8	0	Median	1.0649	0.8697	33.89	2	0	Median	0.92177	1.0882	4.9688	2	0	Median	0.95505	0.91836	3.7138	2	0	Median	0.85432	0.90084	5.5943	2	0	Median	642810000	321750000	321060000	82559000	37020000	45539000	102620000	55275000	47347000	187670000	99767000	87905000	269960000	129690000	140270000	42891	4871	40382	261012;261013;261014;261015;261016;261017;261018;261019;261020;261021;261022;261023	350006;350007;350008;350009;350010;350011;350012;350013;350014;350015;350016;350017;350018	350016			13	
QWWLDVVLQTFHLAGVQDAQAVAPIAEQLYK	1	Unmodified	3536.8456	0.8456252	4397	Q9BSH5	HDHD3	Haloacid dehalogenase-like hydrolase domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.26	95.536	4	0.011859	56414	160513_QHF_FH_JSI10Kac_6	40.43	30.282			0.94803	1.102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94803	1.102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50557000	34048000	16508000	0	0	0	50557000	34048000	16508000	0	0	0	0	0	0	42892	4397	40383	261024	350019	350019			1	
QWYESHYALPLGR	0	Unmodified	1618.7892	0.78922595	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		24	12						12	11	13	9	15	65.399	62.716	2;3	2.2854E-53	54420	160511_QHF_FH_JSI11i_2	211.38	197.96			0.87856	0.94573	25.305	44	24	Median	1.3632	1.1494	25.749	11	6	Median	0.81945	0.98727	19.235	12	3	Median	0.905	0.8937	22.641	8	5	Median	0.76971	0.83422	22.404	13	10	Median	9491000000	5198600000	4292400000	1038100000	476330000	561770000	2896200000	1606400000	1289700000	1970900000	1075400000	895510000	3585900000	2040500000	1545400000	42893	1985	40384	261025;261026;261027;261028;261029;261030;261031;261032;261033;261034;261035;261036;261037;261038;261039;261040;261041;261042;261043;261044;261045;261046;261047;261048;261049;261050;261051;261052;261053;261054;261055;261056;261057;261058;261059;261060;261061;261062;261063;261064;261065;261066;261067;261068;261069;261070;261071;261072	350020;350021;350022;350023;350024;350025;350026;350027;350028;350029;350030;350031;350032;350033;350034;350035;350036;350037;350038;350039;350040;350041;350042;350043;350044;350045;350046;350047;350048;350049;350050;350051;350052;350053;350054;350055;350056;350057;350058;350059;350060;350061;350062;350063;350064;350065;350066;350067;350068;350069;350070;350071;350072;350073;350074;350075;350076;350077;350078;350079;350080;350081;350082;350083;350084;350085;350086;350087;350088;350089;350090;350091;350092;350093;350094;350095	350061			75	
QYAGLDHELAFSR	0	Unmodified	1505.7263	0.72629134	4307	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	2	4	1	53.171	52.463	2;3	6.5217E-22	46116	160511_QHF_FH_JSI9i_2	176.78	145.28			0.99225	1.0159	19.551	9	1	Median	1.1971	1.0371	2.9212	2	0	Median	0.75407	0.93823	8.6621	2	0	Median	1.0163	1.0194	30.582	4	1	Median	0.95734	1.0461	NaN	1	0	Median	1685400000	872710000	812720000	297840000	136160000	161680000	585680000	309450000	276220000	740890000	394780000	346110000	61027000	32316000	28711000	42894	4307	40385	261073;261074;261075;261076;261077;261078;261079;261080;261081	350096;350097;350098;350099;350100;350101;350102;350103;350104;350105;350106;350107	350101			10	
QYAGYDYSQQGR	0	Unmodified	1434.6164	0.61640654	3942	Q969M3	YIPF5	Protein YIPF5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.87	5						2			2	1	2	2	26.362	24.079	2	7.3471E-08	21212	160511_QHF_FH_JSI10i_1	138.22	111.83			1.0676	1.2483	11.891	5	1	Median	1.5876	1.3466	NaN	1	0	Median	1.0676	1.2914	NaN	1	0	Median	1.15	1.1383	13.043	2	1	Median	1.0242	1.0589	NaN	1	0	Median	319340000	144770000	174570000	64958000	26713000	38245000	80195000	37392000	42804000	94063000	46669000	47394000	80124000	33996000	46129000	42895	3942	40386	261082;261083;261084;261085;261086;261087;261088	350108;350109;350110;350111;350112;350113;350114;350115;350116;350117;350118	350114			11	
QYAHIYATR	0	Unmodified	1121.5618	0.56179219	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	25.102	17.103	3	0.016982	9989	160513_QHF_FH_JSI10Kac_6	32.731	25.085			0.99021	1.2338	15.421	4	0	Linear	1.1866	0.98465	NaN	1	0	Median	1.092	1.2966	NaN	1	0	Median	0.88448	0.92619	NaN	1	0	Median	0.8979	0.95935	NaN	1	0	Median	22833000	11971000	10862000	5324000	2578200	2745700	10730000	5918900	4811400	1943700	1096200	847580	4835300	2377700	2457700	42896	1638	40387	261089;261090;261091;261092	350119;350120;350121;350122	350122			4	
QYAIVFR	0	Unmodified	895.49159	0.49158736	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	59.449	49.599	2	0.0090752	26849	160513_QHF_FH_JSI11Kac_6	96.666	69.499			1.1816	1.0643	7.7563	4	1	Median	1.2662	1.0875	7.468	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1345	1.0981	NaN	1	1	Median	0.8858	0.95933	NaN	1	0	Median	72724000	36013000	36711000	32542000	14977000	17565000	0	0	0	22895000	12712000	10183000	17288000	8325100	8962500	42897	2157	40388	261093;261094;261095;261096	350123;350124	350123			2	
QYAKDIGFIK	2	Acetyl (K)	1223.655	0.65502388	1994	P62273	RPS29	40S ribosomal protein S29	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		71.735	60.962	2	0.0001111	32576	160513_QHF_FH_JSI10Kac_4	101.65	82.375			0.53097	0.58747	132.22	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2194	1.4963	NaN	1	0	Median	0.23121	0.23065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27563000	19584000	7978600	0	0	0	8462900	3881900	4581000	19100000	15702000	3397600	0	0	0	42898	1994	40389	261097;261098	350125;350126	350125	2021		2	
QYAMDYSNK	1	Unmodified	1118.4703	0.47025958	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				23.952	22.725	2	0.047583	19508	160511_QHF_FH_JSI9i_1	44.719	31.929			0.97589	0.77797	NaN	1	1	Median	0.97589	0.77797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25385000	14135000	11250000	25385000	14135000	11250000	0	0	0	0	0	0	0	0	0	42899	213	40390	261099	350127	350127			1	
QYASLTGTQALPPLFSLGYHQSR	0	Unmodified	2534.2918	0.29177193	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		3	5						4	3	4	3	2	91.828	88.773	3	5.9895E-38	43026	160513_QHF_FH_JSI11Kac_6	165.38	149.08			0.97083	1.0051	25.217	12	4	Median	1.0763	0.9229	13.564	3	1	Median	0.89989	1.0662	42.703	4	2	Linear	1.0834	1.0362	12.146	3	1	Plateau	0.92087	0.94993	18.204	2	0	Median	3342200000	1694500000	1647800000	849200000	364630000	484580000	1177900000	642920000	534960000	753390000	384220000	369170000	561750000	302700000	259050000	42900	2569	40391	261100;261101;261102;261103;261104;261105;261106;261107;261108;261109;261110;261111	350128;350129;350130;350131;350132;350133;350134;350135;350136;350137;350138;350139;350140;350141;350142;350143;350144;350145;350146;350147;350148	350133			21	
QYASYEFVQR	0	Unmodified	1289.6041	0.60405094	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.4	1	4						3		1	3	2	2	46.057	41.574	2	3.1977E-14	35782	160511_QHF_FH_JSI11i_2	162.88	153.1			0.91373	1.0843	24.318	8	0	Median	1.2833	1.1036	NaN	1	0	Median	0.92779	1.0908	5.0993	3	0	Median	0.96912	0.96369	17.479	2	0	Median	0.64322	0.70582	31.776	2	0	Median	368890000	185030000	183860000	59261000	25714000	33546000	123650000	59045000	64606000	109220000	54714000	54502000	76763000	45553000	31210000	42901	2517	40392	261112;261113;261114;261115;261116;261117;261118;261119	350149;350150;350151;350152;350153;350154;350155;350156;350157;350158	350154			10	
QYAYFYK	1	Unmodified	981.45962	0.45961853	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	50.801	41.047	2	0.051878	21459	160513_QHF_FH_JSI12Kac_6	48.504	38.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42902	3312	40393	261120	350159	350159			1	
QYDADLEQILIQWITTQCR	0	Unmodified	2393.1685	0.16854525	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	99.367	91.858	2;3	0	54901	160513_QHF_FH_JSI10Kac_6	402.73	365.11			1.0546	1.0756	17.713	4	0	Median	1.3556	1.1703	NaN	1	0	Median	0.82164	0.98607	0.36632	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3489	1.431	NaN	1	0	Median	1344500000	622270000	722280000	237410000	96220000	141190000	759500000	379790000	379710000	0	0	0	347630000	146260000	201370000	42903	1470	40394	261121;261122;261123;261124	350160;350161;350162;350163	350163			3	
QYDADLEQILIQWITTQCRK	1	Unmodified	2521.2635	0.26350827	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.77		2	1						4	1	3	2	1	99.572	94.745	3	1.3084E-104	48373	160513_QHF_FH_JSI12Kac_6	235.26	210.39			1.091	1.3123	21.251	7	2	Median	1.6972	1.4224	NaN	1	0	Median	1.0148	1.2124	13.411	3	2	Plateau	0.98915	0.94403	10.368	2	0	Median	1.4105	1.4832	NaN	1	0	Median	2175800000	1005900000	1169900000	192630000	69048000	123580000	908980000	436740000	472240000	593350000	294250000	299100000	480830000	205820000	275000000	42904	1470	40395	261125;261126;261127;261128;261129;261130;261131	350164;350165;350166;350167;350168;350169;350170;350171;350172;350173;350174	350172			11	
QYDAGRDGFIDLMELK	1	Unmodified	1869.8931	0.89309867	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	2.14	0.35		6	1							1	2	1	3	87.183	86.63	3	0.023085	75505	160511_QHF_FH_JSI12i_2	35.329	25.541			0.95041	1.0609	29.667	6	1	Median	1.9517	1.6824	NaN	1	0	Median	0.70278	0.8513	27.337	2	1	Median	1.1003	1.097	NaN	1	0	Median	0.90424	0.95299	18.956	2	0	Median	148420000	73134000	75289000	11888000	4753000	7135000	46740000	27814000	18926000	33621000	14107000	19514000	56174000	26460000	29714000	42905	3998	40396	261132;261133;261134;261135;261136;261137;261138	350175;350176;350177	350176			3	
QYDAYGSAGFDPGASGSQHSYWK	1	Unmodified	2478.0513	0.051266887	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	59.45	58.537	3	1.6686E-10	50459	160511_QHF_FH_JSI11i_2	98.703	95.547			1.1244	1.156	27.923	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96179	0.94884	NaN	1	0	Median	1.3146	1.4083	NaN	1	0	Median	90296000	46325000	43971000	0	0	0	0	0	0	48270000	26775000	21494000	42026000	19550000	22477000	42906	4062	40397	261139;261140;261141	350178;350179;350180;350181	350180			3	
QYDEALNK	1	Unmodified	979.46108	0.4610751	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	18.888	16.081	2	0.00024019	13306	160511_QHF_FH_JSI9i_1	117.18	97.699			0.89869	0.91766	7.2709	6	0	Median	0.98265	0.80039	NaN	1	0	Median	0.75146	0.88762	8.0124	2	0	Median	0.95578	0.93476	4.5821	2	0	Median	0.87699	0.93053	NaN	1	0	Median	2877100000	1496000000	1381100000	670220000	347700000	322530000	760640000	432270000	328370000	725650000	353700000	371950000	720570000	362290000	358290000	42907	2094	40398	261142;261143;261144;261145;261146;261147	350182;350183;350184;350185;350186;350187;350188	350187			7	
QYDIDDAIAK	1	Unmodified	1150.5506	0.55061839	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				48.064	46.842	2	0.011146	41622	160511_QHF_FH_JSI9i_1	56.632	45.142			1.2018	0.9721	NaN	1	1	Median	1.2018	0.9721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50910000	25869000	25041000	50910000	25869000	25041000	0	0	0	0	0	0	0	0	0	42908	2636	40399	261148	350189	350189			1	
QYDISDPQRPR	0	Unmodified	1373.6688	0.66877646	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.4		8	4				1	3		2	3	5	6	25.322	22.547	2;3	2.1724E-06	18703	160511_QHF_FH_JSI12i_3	136.63	112.78			0.97961	1.0423	9.3089	16	1	Median	1.2507	1.0692	3.1106	2	0	Median	0.77944	0.96972	4.4986	3	0	Plateau	1.1389	1.0864	11.507	5	0	Median	0.97446	1.0426	9.1512	6	1	Median	1209300000	616320000	592940000	182440000	93327000	89112000	254840000	142480000	112350000	418060000	197580000	220480000	353920000	182930000	170990000	42909	2374	40400	261149;261150;261151;261152;261153;261154;261155;261156;261157;261158;261159;261160;261161;261162;261163;261164	350190;350191;350192;350193;350194;350195;350196;350197;350198;350199;350200;350201;350202;350203;350204;350205;350206;350207;350208;350209;350210;350211	350209			22	
QYDQEIENLEK	1	Unmodified	1407.6518	0.65178899	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	44.752	44.233	2	0.00034105	39943	160511_QHF_FH_JSI11i_1	89.032	73.141			0.27171	0.27665	19.122	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24419	0.24166	NaN	1	1	Median	0.30235	0.31671	NaN	1	1	Median	636910000	548930000	87985000	0	0	0	0	0	0	438200000	388750000	49452000	198710000	160180000	38534000	42910	4673	40401	261165;261166	350212;350213	350212			2	
QYDSFTFTASK	1	Unmodified	1293.5877	0.58773217	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							1	3	1	2	50.805	49.964	2	1.7146E-05	44321	160511_QHF_FH_JSI9i_1	123.51	108.84			0.96467	1.0546	11.941	6	1	Median	1.1103	0.8956	NaN	1	0	Median	0.91953	1.1137	2.9744	2	0	Median	1.2507	1.2128	NaN	1	0	Median	0.89211	0.96936	7.1795	2	1	Median	1631700000	795500000	836200000	235810000	109350000	126460000	528870000	280270000	248600000	366470000	154140000	212330000	500550000	251730000	248820000	42911	5573	40402	261167;261168;261169;261170;261171;261172;261173	350214;350215;350216;350217;350218;350219;350220;350221	350221			8	
QYDSFTYR	0	Unmodified	1078.472	0.47197413	5600	Q9Y3Q3	TMED3	Transmembrane emp24 domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	32.382	31.527	2	0.0053228	27301	160511_QHF_FH_JSI9i_2	63.565	35.391			1.0654	1.1474	4.1628	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0977	1.1142	NaN	1	0	Median	1.0342	1.1817	NaN	1	1	Median	140130000	69410000	70723000	0	0	0	0	0	0	85478000	43341000	42137000	54655000	26069000	28586000	42912	5600	40403	261174;261175;261176	350222;350223;350224	350223			3	
QYDTYGEEGLK	1	Unmodified	1301.5776	0.57756142	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	34.453	31.055	2	8.1247E-10	27930	160511_QHF_FH_JSI12i_1	137.46	131.42			1.0409	1.0981	14.634	6	0	Median	1.4095	1.1478	NaN	1	0	Median	0.81153	0.95869	14.49	2	0	Median	1.0409	1.0361	12.935	2	0	Median	1.2204	1.3012	NaN	1	0	Median	1594500000	743400000	851100000	281500000	118340000	163160000	514460000	302920000	211540000	378810000	146590000	232220000	419730000	175560000	244170000	42913	5251	40404	261177;261178;261179;261180;261181;261182	350225;350226;350227;350228;350229;350230;350231;350232;350233;350234;350235;350236	350229			12	
QYEDEAAK	1	Unmodified	952.41379	0.41379055	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.7851	7.1427	2	0.017839	4722	160511_QHF_FH_JSI9i_1	58.286	34.314			1.4499	1.2283	NaN	1	1	Median	1.4499	1.2283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27593000	8741000	18852000	27593000	8741000	18852000	0	0	0	0	0	0	0	0	0	42914	416	40405	261183	350237	350237			1	
QYEGGIFK	1	Unmodified	940.46543	0.46543219	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.366	33.431	2	0.0091869	28377	160511_QHF_FH_JSI11i_2	56.27	36.793			0.79218	0.86937	5.7106	4	0	Linear	0.88139	0.75014	NaN	1	0	Median	0.65515	0.82339	NaN	1	0	Median	0.84909	0.85838	NaN	1	0	Median	0.73908	0.82447	NaN	1	0	Median	411000000	215840000	195160000	83344000	37667000	45677000	96708000	50783000	45925000	123510000	69209000	54304000	107430000	58176000	49259000	42915	989	40406	261184;261185;261186;261187	350238;350239;350240;350241	350240			4	
QYEKSIVNYKPK	3	Acetyl (K)	1537.814	0.81404372	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		51.045	40.383	3	0.020526	22496	160513_QHF_FH_JSI11Kac_5	53.252	45.882			0.018665	0.017827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.018665	0.017827	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1543200	1527000	16175	0	0	0	0	0	0	1543200	1527000	16175	0	0	0	42916	1021	40407	261188	350242	350242	835;836;837		1	
QYELVVHTDIDAAK	1	Unmodified	1600.8097	0.80968662	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	54.126	52.923	2	0.00021591	45305	160511_QHF_FH_JSI12i_2	88.552	75.785			0.54137	0.52685	21.684	2	1	Median	0.51408	0.45196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57012	0.61416	NaN	1	0	Median	27305000	18390000	8915500	12926000	10127000	2798900	0	0	0	0	0	0	14379000	8262800	6116600	42917	1100	40408	261189;261190	350243;350244	350243			2	
QYEQQTYQVIPEVIK	1	Unmodified	1864.9571	0.95707914	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	71.45	70.954	2;3	2.0186E-65	62956	160511_QHF_FH_JSI9i_1	231.52	208.6			1.2625	1.2764	13.81	9	2	Median	1.5517	1.2695	8.0244	2	0	Median	1.0935	1.3099	21.483	3	2	Median	1.3277	1.2865	13.415	2	0	Median	1.2089	1.2456	3.4587	2	0	Median	2079100000	943300000	1135800000	408070000	178610000	229460000	713160000	355310000	357850000	477640000	192290000	285350000	480250000	217090000	263160000	42918	5494	40409	261191;261192;261193;261194;261195;261196;261197;261198;261199	350245;350246;350247;350248;350249;350250;350251;350252;350253;350254;350255;350256;350257;350258;350259;350260	350257			16	
QYETLAEMVVPR	0	Unmodified	1434.7177	0.71770049	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	74.233	73.511	2	0.00035196	64442	160511_QHF_FH_JSI11i_2	152.07	137.38			0.85513	0.79686	5.98	2	2	Median	0.90496	0.76387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80804	0.83128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133500000	68591000	64912000	39797000	18573000	21224000	0	0	0	93705000	50017000	43688000	0	0	0	42919	1190	40410	261200;261201;261202	350261;350262;350263	350263			3	
QYFEQFGK	1	Unmodified	1045.4869	0.48689592	4028	Q96DH6;O43347	MSI2;MSI1	RNA-binding protein Musashi homolog 2;RNA-binding protein Musashi homolog 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	43.518	42.55	2	0.0025229	36350	160511_QHF_FH_JSI11i_2	79.451	72.101			1.09	1.1023	26.209	4	2	Linear	0.74187	0.66293	NaN	1	1	Median	0.94741	1.1499	NaN	1	1	Median	1.0891	1.1095	NaN	1	0	Median	0.97718	1.0951	NaN	1	0	Median	305430000	141360000	164070000	46585000	25704000	20881000	75804000	30773000	45032000	97953000	46649000	51303000	85084000	38232000	46852000	42920	4028	40411	261203;261204;261205;261206;261207	350264;350265;350266;350267;350268;350269;350270	350268			7	
QYFHQLEK	1	Unmodified	1091.54	0.53999412	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							2	2	4	5	24.019	23.423	2;3	0.00028748	19471	160511_QHF_FH_JSI11i_3	85.731	78.085			1.0266	1.1141	41.916	13	2	Median	1.4422	1.2085	1.8695	2	0	Median	1.1368	1.3399	19.5	2	0	Median	0.97605	0.956	20.746	4	1	Median	0.7123	0.79538	58.378	5	1	Median	2576400000	1244900000	1331500000	166990000	63601000	103390000	245100000	104030000	141070000	965760000	478130000	487630000	1198500000	599140000	599400000	42921	1544	40412	261208;261209;261210;261211;261212;261213;261214;261215;261216;261217;261218;261219;261220	350271;350272;350273;350274;350275;350276;350277;350278;350279;350280;350281;350282;350283;350284;350285;350286;350287;350288	350273			16	
QYFHQLEKMNVK	2	Acetyl (K)	1605.7973	0.79734779	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	3	1	60.673	51.236	2;3	5.3101E-07	28060	160513_QHF_FH_JSI10Kac_6	109	101.96			0.1273	0.13069	197.54	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.48235	0.55421	NaN	1	1	Median	0.033599	0.030817	NaN	1	1	Median	1.2434	1.3476	NaN	1	1	Median	200800000	144550000	56253000	0	0	0	110820000	69396000	41424000	64036000	62973000	1062900	25943000	12177000	13766000	42922	1544	40413	261221;261222;261223;261224;261225;261226	350289;350290;350291;350292;350293;350294	350293	1559		6	
QYFHQLEKMNVK	2	Acetyl (K);Oxidation (M)	1621.7923	0.79226242	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	1	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	47.012	37.816	3	0.011303	20160	160513_QHF_FH_JSI9Kac_6	46.378	34.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3665800	0	3665800	3665800	0	3665800	0	0	0	0	0	0	0	0	0	42923	1544	40413	261227;261228;261229	350295;350296;350297	350296	1559	1217	3	
QYFPNDEDQVGAAK	1	Unmodified	1580.7107	0.71070086	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	44.776	40.439	2	5.4678E-30	35722	160511_QHF_FH_JSI9i_1	191.52	177.36			1.0461	1.0272	10.659	7	1	Median	1.1021	0.90522	NaN	1	0	Median	0.88146	1.0208	14.25	2	0	Median	1.1174	1.0871	8.0131	2	0	Median	1.0259	1.0728	12.544	2	1	Median	670850000	337540000	333310000	122610000	57189000	65420000	178250000	98114000	80134000	185720000	79605000	106120000	184270000	102630000	81639000	42924	1035	40414	261230;261231;261232;261233;261234;261235;261236	350298;350299;350300;350301;350302;350303;350304;350305;350306;350307	350306			10	
QYFQTAEK	1	Unmodified	1013.4818	0.48181054	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		1.5	0.5	2	2								1	2	1		20.472	19.835	2	0.0071248	16210	160511_QHF_FH_JSI11i_2	60.478	46.32			0.86737	0.8814	21.609	4	0	Median	0.91051	0.75554	NaN	1	0	Median	0.72902	0.87989	22.032	2	0	Median	1.1629	1.15	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	155010000	84950000	70062000	44405000	25158000	19246000	77386000	46842000	30544000	33221000	12949000	20271000	0	0	0	42925	1695	40415	261237;261238;261239;261240	350308	350308			1	
QYFSEMPWLAVPYTDEARR	0	Unmodified	2358.1103	0.11030209	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	95.021	95.025	3	4.4575E-05	82267	160511_QHF_FH_JSI12i_3	65.423	61.316			1.4357	1.4187	3.284	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4689	1.3861	NaN	1	1	Median	1.4033	1.452	NaN	1	0	Median	47496000	14318000	33178000	0	0	0	0	0	0	22335000	4488200	17847000	25161000	9829500	15331000	42926	3038	40416	261241;261242	350309;350310;350311	350310			3	
QYGEVANLLQGVMNVLEHFHK	1	Unmodified	2425.2212	0.22124952	2978	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.263	93.543	4	1.148E-17	54899	160513_QHF_FH_JSI10Kac_6	132.13	108.68			0.99317	1.166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99317	1.166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103750000	54241000	49506000	0	0	0	103750000	54241000	49506000	0	0	0	0	0	0	42927	2978	40417	261243	350312	350312			1	
QYGFCKGSVIQK	2	Acetyl (K)	1455.718	0.71803484	55	CON__P12763			yes	yes	1	0	0	1			By MS/MS		15	0								1				1		63.203	52.283	2	1.7464E-15	28448	160513_QHF_FH_JSI11Kac_5	139.86	117.12		+	0.24023	0.24062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24023	0.24062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7837400	5938700	1898600	0	0	0	0	0	0	7837400	5938700	1898600	0	0	0	42928	55	40418	261244	350313	350313	36		1	
QYGLILPK	1	Unmodified	930.55385	0.55385327	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.316	55.96	2	0.056342	48125	160511_QHF_FH_JSI12i_2	35.88	4.5906			0.83337	0.93174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83337	0.93174	NaN	1	0	Median	165060000	81822000	83241000	0	0	0	0	0	0	0	0	0	165060000	81822000	83241000	42929	4632	40419	261245	350314	350314			1	
QYGNEVFLAK	1	Unmodified	1167.5924	0.59242362	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.55	3	5	2				2			3	4	3	2	48.217	45.403	2	6.4193E-11	41520	160511_QHF_FH_JSI12i_1	166.07	129.67			1.0283	1.0126	39.345	11	3	Median	1.1295	0.93236	6.9319	3	0	Median	0.84363	1.0093	65.38	4	2	Median	1.1418	1.1381	20.268	2	1	Median	0.96861	1.0608	4.2186	2	0	Median	4664200000	2356400000	2307800000	1298900000	631950000	666910000	1426300000	746580000	679710000	544810000	223460000	321350000	1394200000	754450000	639790000	42930	1721	40420	261246;261247;261248;261249;261250;261251;261252;261253;261254;261255;261256;261257	350315;350316;350317;350318;350319;350320;350321;350322;350323;350324;350325;350326;350327;350328;350329;350330;350331;350332	350319			18	
QYGPNVPEPILQK	1	Unmodified	1481.7878	0.78782897	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	60.187	59.664	2	4.1198E-05	53876	160511_QHF_FH_JSI10i_1	117.02	102.86			0.82044	0.87617	30.275	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62398	0.70732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0788	1.0853	NaN	1	1	Median	60077000	36360000	23717000	0	0	0	31861000	19899000	11962000	0	0	0	28216000	16461000	11755000	42931	15	40421	261258;261259	350333;350334	350334			2	
QYGSEGR	0	Unmodified	795.35113	0.35113072	3296;4475	Q7Z7H5;Q9BVK6	TMED4;TMED9	Transmembrane emp24 domain-containing protein 4;Transmembrane emp24 domain-containing protein 9	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								3	3	4	3	4.9248	4.5922	2	0.00864	2402	160511_QHF_FH_JSI11i_1	71.715	60.153			1.093	1.1032	11.388	12	1	Median	1.3514	1.1155	13.899	3	0	Median	0.8926	1.0528	10.559	3	1	Median	1.1185	1.091	12.093	3	0	Plateau	1.0002	1.0661	7.5162	3	0	Median	3643000000	1817000000	1826000000	366660000	158360000	208300000	1256100000	658760000	597370000	649940000	306760000	343180000	1370200000	693090000	677150000	42932	3296;4475	40422	261260;261261;261262;261263;261264;261265;261266;261267;261268;261269;261270;261271;261272	350335;350336;350337;350338;350339;350340;350341	350335			7	
QYHLQQLFYR	0	Unmodified	1394.7095	0.70951906	2410	Q13433	SLC39A6	Zinc transporter ZIP6	yes	yes	0	0	0	0		By matching		By MS/MS	16	0									2		1		1	66.068	57.062	3	0.00055721	30030	160513_QHF_FH_JSI12Kac_6	70.399	66.636			0.84387	0.95075	11.702	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75424	0.87524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94416	1.0328	NaN	1	0	Median	59986000	34331000	25655000	0	0	0	50741000	30463000	20278000	0	0	0	9245400	3867800	5377600	42933	2410	40423	261273;261274	350342	350342			1	
QYHPVVHPLDLK	1	Unmodified	1444.7827	0.78268401	4129	Q96IY1	NSL1	Kinetochore-associated protein NSL1 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		40.123	40.123	4	0.049865	35326	160511_QHF_FH_JSI11i_3	25.718	13.925			1.0189	0.96167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0189	0.96167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22387000	7682000	14705000	0	0	0	0	0	0	22387000	7682000	14705000	0	0	0	42934	4129	40424	261275	350343	350343			0	
QYIATIHSR	0	Unmodified	1087.5774	0.57744226	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		16	0									3	1	1	1		27.054	18.599	3	0.023065	10749	160513_QHF_FH_JSI9Kac_6	41.164	33.901			0.87504	1.0385	4.5821	3	0	Plateau	1.2465	1.0385	NaN	1	0	Median	0.87504	1.002	NaN	1	0	Median	1.132	1.0974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24066000	12628000	11439000	5237900	2560400	2677500	13206000	7638700	5567600	5622200	2428500	3193700	0	0	0	42935	3862	40425	261276;261277;261278	350344	350344			0	
QYIEFVADR	0	Unmodified	1139.5611	0.56112349	1373;3241	P31350;Q7LG56	RRM2;RRM2B	Ribonucleoside-diphosphate reductase subunit M2;Ribonucleoside-diphosphate reductase subunit M2 B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.363	52.533	2	2.7657E-06	44948	160511_QHF_FH_JSI12i_2	113.62	92.65			0.76074	1.016	24.093	3	3	Plateau	1.204	1.016	NaN	1	1	Median	0.9919	1.2197	NaN	1	1	Median	0.76074	0.7566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	208550000	99302000	109250000	53550000	24865000	28685000	72032000	25830000	46202000	82973000	48607000	34366000	0	0	0	42936	1373;3241	40426	261279;261280;261281;261282	350345;350346;350347;350348	350345			4	
QYIGPPSAAAIFK	1	Unmodified	1361.7343	0.73433683	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	3.92	3	4	4						1	2	3	4	3	74.864	73.446	2	2.4988E-05	63714	160511_QHF_FH_JSI12i_2	118.4	105.03			1.0414	1.0224	16.885	12	2	Median	1.0611	0.88013	11.88	2	0	Median	0.80776	0.99481	15.669	3	0	Median	1.1129	1.1	5.4317	4	1	Median	1.1292	1.2648	19.91	3	1	Median	1826700000	930900000	895850000	270740000	130040000	140700000	400660000	229160000	171490000	720620000	373040000	347580000	434730000	198660000	236080000	42937	2692	40427	261283;261284;261285;261286;261287;261288;261289;261290;261291;261292;261293;261294	350349;350350;350351;350352;350353;350354;350355;350356;350357;350358;350359;350360;350361;350362;350363;350364;350365;350366	350352			18	
QYIISEELISEGK	1	Unmodified	1507.777	0.77698951	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	3	2	2	71.9	71.109	2	7.801E-53	64329	160511_QHF_FH_JSI10i_1	216.91	201.28			0.97401	0.98422	31.508	9	3	Median	1.2178	1.0277	8.2789	2	1	Median	0.89591	1.0456	57.481	3	2	Median	0.90342	0.89392	13.608	2	0	Median	0.91146	0.98845	15.421	2	0	Median	2130100000	1090400000	1039700000	400010000	173900000	226110000	572840000	297310000	275530000	582190000	315670000	266520000	575080000	303570000	271510000	42938	5370	40428	261295;261296;261297;261298;261299;261300;261301;261302;261303;261304	350367;350368;350369;350370;350371;350372;350373;350374;350375;350376;350377;350378;350379;350380;350381;350382;350383;350384	350377			18	
QYKSQFEAQK	2	Acetyl (K)	1297.6303	0.63026569	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		34.916	25.623	2	0.015235	15949	160513_QHF_FH_JSI11Kac_4	55.567	55.567			0.36374	0.35896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36374	0.35896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6526400	4966600	1559700	0	0	0	0	0	0	6526400	4966600	1559700	0	0	0	42939	576	40429	261305	350385	350385	300		1	
QYLAQQLTLLQDLFSLLHTASPR	0	Unmodified	2655.4384	0.43843617	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.39	94.67	3	8.4908E-12	55756	160513_QHF_FH_JSI10Kac_6	161.58	140.29			0.97503	1.1312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97503	1.1312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107920000	36504000	71413000	0	0	0	107920000	36504000	71413000	0	0	0	0	0	0	42940	545	40430	261306	350386	350386			1	
QYLAQWLEK	1	Unmodified	1177.6132	0.61315906	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	67.922	67.251	2	0.0012377	58292	160511_QHF_FH_JSI12i_3	78.516	57.816			1.2066	1.1515	17.395	3	3	Plateau	1.2066	1.0812	NaN	1	1	Median	1.019	1.241	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4857	1.5275	NaN	1	1	Median	121000000	53950000	67050000	48098000	19671000	28426000	35791000	19484000	16307000	0	0	0	37112000	14795000	22317000	42941	1528	40431	261307;261308;261309	350387;350388;350389	350389			3	
QYLAVVFR	0	Unmodified	994.56	0.56000128	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			15	0								2		1	1			73.559	62.999	2	0.0084681	31476	160513_QHF_FH_JSI10Kac_5	70.912	59.191			0.88325	0.8733	14.063	2	1	Median	1.1548	0.9646	NaN	1	1	Median	0.67558	0.79063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5970900	3143600	2827300	3232300	1533500	1698900	2738500	1610200	1128400	0	0	0	0	0	0	42942	4564	40432	261310;261311	350390;350391	350391			2	
QYLLFFHK	1	Unmodified	1094.5913	0.59130141	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	70.726	65.976	2;3	4.412E-11	36057	160513_QHF_FH_JSI10Kac_6	158.08	128.93			0.94326	0.93564	35.177	16	4	Median	1.0714	0.92636	34.732	4	0	Median	0.80033	0.94836	45.926	4	0	Median	0.91584	0.86511	48.349	4	3	Median	0.96031	0.96652	18.323	4	1	Median	2215000000	1139300000	1075700000	463210000	238290000	224920000	587000000	335780000	251220000	744790000	370990000	373800000	420020000	194230000	225790000	42943	3635	40433	261312;261313;261314;261315;261316;261317;261318;261319;261320;261321;261322;261323;261324;261325;261326;261327	350392;350393;350394;350395;350396;350397;350398;350399;350400;350401;350402;350403;350404;350405;350406;350407;350408;350409;350410;350411;350412;350413;350414;350415;350416	350415			25	
QYLLLHSLK	1	Unmodified	1113.6546	0.65462995	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	60.614	53.174	2;3	0.00025355	29281	160513_QHF_FH_JSI10Kac_6	85.355	76.773			1.1617	1.0942	86.483	5	1	Median	1.2898	1.0942	NaN	1	0	Median	0.61497	0.74349	NaN	1	0	Median	1.2451	1.1742	NaN	1	0	Median	0.40436	0.4513	146.29	2	1	Median	128170000	85916000	42259000	14588000	4654300	9933600	21658000	10613000	11045000	10355000	4938400	5416400	81574000	65710000	15864000	42944	3343	40434	261328;261329;261330;261331;261332	350417;350418;350419;350420;350421;350422	350422			6	
QYLPHVAR	0	Unmodified	982.53485	0.53484916	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	4	2	3	29.255	24.32	2;3	0.00011102	19690	160511_QHF_FH_JSI9i_3	128.48	105.47			0.98845	1.0019	17.173	8	1	Median	0.97182	0.76705	19.159	3	0	Plateau	0.98638	1.1874	8.2543	2	0	Median	1.1847	1.1575	NaN	1	0	Median	0.87614	0.91213	1.261	2	1	Median	957780000	471230000	486550000	598150000	279840000	318310000	96748000	51830000	44917000	6393000	3210000	3183000	256500000	136350000	120140000	42945	271	40435	261333;261334;261335;261336;261337;261338;261339;261340;261341;261342;261343;261344	350423;350424;350425;350426;350427;350428;350429;350430;350431;350432;350433;350434;350435;350436	350429			14	
QYLPNVKPDSSFK	2	Unmodified	1521.7827	0.78274359	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	49.543	48.988	2;3	2.7328E-05	41714	160511_QHF_FH_JSI12i_3	106.32	96.793			0.92188	0.95329	19.123	7	1	Median	1.2214	1.0379	NaN	1	1	Median	0.86266	1.0415	NaN	1	0	Median	1.0207	0.94428	3.1516	2	0	Median	0.92188	0.95329	20.785	3	0	Plateau	1059300000	560880000	498450000	51796000	25916000	25879000	62995000	38404000	24592000	387850000	193000000	194840000	556690000	303560000	253140000	42946	3562	40436	261345;261346;261347;261348;261349;261350;261351	350437;350438;350439;350440;350441;350442;350443;350444;350445	350442			9	
QYLSGELEVELTPQGTLAER	0	Unmodified	2232.1274	0.12739194	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	84.776	84.637	2	1.0774E-54	76819	160511_QHF_FH_JSI10i_1	222.27	192.58			0.74156	0.84881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74156	0.84881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17495000	8919100	8576300	0	0	0	17495000	8919100	8576300	0	0	0	0	0	0	42947	1865	40437	261352;261353;261354	350446;350447;350448;350449	350447			4	
QYLVFHDGDSVVFAGPAGNSVETR	0	Unmodified	2564.2296	0.2295656	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	2	1	2	77.179	75.829	3	1.4531E-18	39433	160513_QHF_FH_JSI10Kac_6	110.94	103.66			0.91667	0.97579	26.698	6	3	Median	1.7511	1.5062	NaN	1	0	Median	0.88459	1.0622	20.164	2	0	Median	1.1187	1.0338	NaN	1	1	Median	0.7741	0.77659	11.082	2	2	Median	487950000	226130000	261820000	38167000	13061000	25105000	107260000	53770000	53489000	113300000	52502000	60793000	229230000	106790000	122430000	42948	1040	40438	261355;261356;261357;261358;261359;261360	350450;350451;350452;350453;350454;350455;350456;350457	350457			8	
QYMEEENYDK	1	Unmodified	1347.5289	0.52889667	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.028	23.482	2	8.7279E-11	20724	160511_QHF_FH_JSI12i_1	141.88	120.41			0.98575	0.95785	25.33	4	0	Median	0.998	0.82709	NaN	1	0	Median	0.83279	0.9661	NaN	1	0	Median	0.97365	0.94967	NaN	1	0	Median	1.4024	1.4846	NaN	1	0	Median	623950000	338510000	285440000	160380000	90722000	69658000	153480000	81939000	71544000	104350000	47927000	56423000	205740000	117920000	87819000	42949	611	40439	261361;261362;261363;261364	350458;350459;350460;350461;350462;350463;350464;350465	350461			8	
QYMEEENYDK	1	Oxidation (M)	1363.5238	0.52381129	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.006	23.459	2	0.00011196	20167	160511_QHF_FH_JSI9i_1	88.392	81.012			1.1281	1.0408	49.299	4	1	Median	1.5542	1.2711	NaN	1	0	Median	1.4234	1.6232	NaN	1	0	Median	0.89417	0.85213	NaN	1	0	Median	0.51722	0.52596	NaN	1	1	Median	131560000	64976000	66581000	34184000	13666000	20518000	21709000	8616000	13093000	46879000	21704000	25175000	28785000	20990000	7794700	42950	611	40439	261365;261366;261367;261368	350466;350467;350468;350469;350470	350469		228	5	
QYMEGFNDELEAFK	1	Unmodified	1719.745	0.74503745	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	3	2	2	80.492	79.808	2	7.1928E-81	72932	160511_QHF_FH_JSI12i_1	242.82	229.16			0.98119	0.95658	18.364	8	5	Median	1.1804	0.9853	8.0927	2	2	Median	0.70425	0.82044	13.446	3	3	Median	0.99944	0.98338	NaN	1	0	Median	1.0379	1.1209	13.963	2	0	Median	847640000	421700000	425940000	213760000	84272000	129490000	233670000	136560000	97115000	235400000	114590000	120810000	164810000	86278000	78527000	42951	2738	40440	261369;261370;261371;261372;261373;261374;261375;261376;261377;261378	350471;350472;350473;350474;350475;350476;350477;350478;350479;350480;350481;350482;350483;350484;350485;350486;350487;350488;350489;350490	350480			20	
QYMEGFNDELEAFK	1	Oxidation (M)	1735.74	0.73995207	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	1	0				By MS/MS	1	0	2												2	69.494	68.89	2	0.014842	62704	160511_QHF_FH_JSI12i_1	52.463	40.597			1.0466	1.0351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0466	1.0351	NaN	1	1	Median	12566000	6369100	6197200	0	0	0	0	0	0	0	0	0	12566000	6369100	6197200	42952	2738	40440	261379;261380	350491;350492	350492		2117	2	
QYMFSSLK	1	Unmodified	1002.4845	0.48445308	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	4	4	52.653	49.584	2	0.00021531	42324	160511_QHF_FH_JSI12i_3	119.29	89.953			0.96599	0.94267	16.642	15	2	Median	1.1038	0.91301	8.8032	3	1	Plateau	0.82194	0.98578	23.405	4	1	Median	1.0224	1.0053	12.157	4	0	Median	0.78603	0.87484	16.116	4	0	Median	4781200000	2335300000	2445900000	832280000	322430000	509850000	967440000	496580000	470860000	1845300000	929330000	915980000	1136200000	586970000	549180000	42953	1024	40441	261381;261382;261383;261384;261385;261386;261387;261388;261389;261390;261391;261392;261393;261394;261395	350493;350494;350495;350496;350497;350498;350499;350500;350501;350502;350503;350504;350505;350506;350507;350508;350509;350510	350509			18	
QYMQMLPK	1	Unmodified	1037.5038	0.50380831	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	46.178	45.041	2	0.001297	38588	160511_QHF_FH_JSI12i_2	107.43	86.129			0.4944	0.61447	23.838	3	3	Median	0.79531	0.6794	NaN	1	1	Median	0.4944	0.61447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39115	0.43155	NaN	1	1	Median	568330000	389750000	178580000	152210000	83610000	68598000	168180000	125770000	42413000	0	0	0	247940000	180370000	67566000	42954	5280	40442	261396;261397;261398	350511;350512;350513	350511			3	
QYNEEGRK	1	Unmodified	1022.4781	0.47812215	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	4.1463	4.1908	2;3	0.0028047	2090	160511_QHF_FH_JSI11i_3	77.674	66.306			0.72863	0.71259	11.214	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82921	0.77139	NaN	1	0	Median	0.64025	0.65826	NaN	1	1	Median	171660000	106720000	64936000	0	0	0	0	0	0	73345000	48384000	24961000	98312000	58337000	39975000	42955	4442	40443	261399;261400	350514;350515;350516	350514			3	
QYNGVPLDGRPMNIQLVTSQIDAQR	0	Unmodified	2812.429	0.42901047	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	85.491	85.066	3	4.0039E-25	75483	160511_QHF_FH_JSI10i_2	154.13	147.25			1.0106	1.0457	13.436	8	0	Median	1.3535	1.1659	NaN	1	0	Median	0.98315	1.1863	18.651	2	0	Median	1.0072	0.93431	7.0559	3	0	Median	0.9571	1.0127	13.918	2	0	Median	1315100000	643810000	671280000	355590000	153750000	201830000	379080000	205660000	173420000	402740000	194560000	208180000	177690000	89837000	87852000	42956	3337	40444	261401;261402;261403;261404;261405;261406;261407;261408	350517;350518;350519;350520;350521;350522;350523;350524;350525;350526;350527;350528	350527			11	
QYPANQGQEVEYFVAGTHPYPPGPGVALTADTK	1	Unmodified	3501.6841	0.68409876	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	86.612	85.893	3	0.00042532	75520	160511_QHF_FH_JSI11i_2	33.234	31.353			0.95365	1.0432	9.9917	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.84611	1.0432	NaN	1	1	Median	1.061	1.1095	NaN	1	0	Median	0.85712	0.91253	NaN	1	0	Median	45631000	22879000	22752000	0	0	0	9484800	3657100	5827700	21973000	12382000	9591300	14173000	6840000	7333100	42957	350	40445	261409;261410;261411	350529;350530;350531;350532;350533;350534;350535	350534			7	
QYPEFPWTDVQAEIFR	0	Unmodified	2024.9632	0.96322715	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	101.72	101.57	2	2.7709E-07	87449	160511_QHF_FH_JSI12i_2	131.06	116.61			1.1901	1.2583	20.473	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4398	1.4543	NaN	1	0	Median	0.98367	1.0887	NaN	1	0	Median	183920000	81616000	102310000	0	0	0	0	0	0	109560000	46793000	62772000	74357000	34824000	39533000	42958	2509	40446	261412;261413	350536	350536			1	
QYPISLVLAPTR	0	Unmodified	1356.7765	0.776536	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.26	6.2	3	6	4					4	2	4	2	7	6	81.505	77.749	2	1.1596E-05	69420	160511_QHF_FH_JSI12i_2	126.19	115.67			1.0798	1.0576	13.149	18	5	Median	1.1342	0.95999	8.5784	4	0	Median	0.77017	0.9378	5.05	2	0	Median	1.1015	1.1111	10.396	7	4	Median	1.012	1.08	10.907	5	1	Median	2306300000	1129500000	1176900000	272730000	122020000	150710000	328240000	190590000	137660000	1206400000	575390000	631030000	498930000	241480000	257450000	42959	154	40447	261414;261415;261416;261417;261418;261419;261420;261421;261422;261423;261424;261425;261426;261427;261428;261429;261430;261431;261432	350537;350538;350539;350540;350541;350542;350543;350544;350545;350546;350547;350548;350549;350550;350551;350552;350553;350554;350555;350556;350557;350558;350559	350541			23	
QYPKFNFVGK	2	Acetyl (K)	1268.6554	0.65535823	2255	Q07666;Q5VWX1	KHDRBS1;KHDRBS2	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2	yes	no	1	0	0	1		By matching	By MS/MS	By MS/MS	15	0								3			1	1	1	75.4	64.835	2	0.0045736	34538	160513_QHF_FH_JSI11Kac_5	70.919	32.626			0.62424	0.62127	32.411	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9638	1.1417	NaN	1	0	Median	0.61476	0.60447	NaN	1	0	Median	0.82043	0.92645	NaN	1	0	Median	13874000	7312800	6561500	0	0	0	4429000	1857800	2571200	4832400	2935500	1896900	4613000	2519500	2093500	42960	2255	40448	261433;261434;261435	350560	350560	2358		1	
QYPLVTPNEER	0	Unmodified	1344.6674	0.66737948	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.262	40.619	2	0.00028425	36440	160511_QHF_FH_JSI11i_1	77.192	62.041			1.1371	1.1882	4.7854	4	0	Median	1.4553	1.2125	NaN	1	0	Median	1.0657	1.2686	NaN	1	0	Median	1.1546	1.1377	NaN	1	0	Median	1.1198	1.1644	NaN	1	0	Median	797620000	370000000	427620000	149480000	61653000	87829000	219720000	105910000	113810000	233820000	115900000	117910000	194600000	86537000	108060000	42961	1438	40449	261436;261437;261438;261439	350561;350562;350563;350564;350565;350566	350561			6	
QYPLVTPNEERNVMEEGK	1	Unmodified	2132.0208	0.020818382	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	54.962	54.286	3	5.4415E-05	46597	160511_QHF_FH_JSI12i_3	72.446	62.885			1.2292	1.3207	17.703	6	2	Median	1.8231	1.5096	NaN	1	0	Median	1.1152	1.3736	NaN	1	1	Median	1.5828	1.5427	30.93	2	1	Median	1.175	1.2288	4.6399	2	0	Median	313780000	142330000	171450000	35099000	16809000	18290000	46273000	16645000	29628000	104270000	47832000	56441000	128130000	61046000	67086000	42962	1438	40450	261440;261441;261442;261443;261444;261445;261446;261447	350567;350568;350569;350570;350571;350572;350573;350574	350574			8	
QYPPNTSK	1	Unmodified	933.4556	0.45559579	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.4369	9.3142	2	0.016706	7009	160511_QHF_FH_JSI11i_1	47.657	15.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42963	1566	40451	261448	350575	350575			1	
QYPYNNLYLER	0	Unmodified	1471.7096	0.70957864	651	O95169	NDUFB8	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	56.719	55.971	2	0.00013278	49359	160511_QHF_FH_JSI10i_2	84.268	76.225			0.90623	1.0589	9.6369	7	3	Median	1.2792	1.1137	NaN	1	0	Median	0.88723	1.0595	0.069887	2	1	Median	1.0187	1.012	21.224	2	1	Median	0.92242	0.99783	2.2977	2	1	Median	347590000	191260000	156330000	37007000	18983000	18024000	95758000	55818000	39940000	127560000	64692000	62873000	87262000	51771000	35492000	42964	651	40452	261449;261450;261451;261452;261453;261454;261455	350576;350577;350578;350579;350580;350581;350582;350583;350584	350584			9	
QYQATGFLWEQYSDRDGR	0	Unmodified	2219.0032	0.0031944826	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			73.71	66.338	3	1.1693E-07	36553	160513_QHF_FH_JSI10Kac_6	107.34	91.032			0.81369	0.95638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81369	0.95638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29193000	15679000	13514000	0	0	0	29193000	15679000	13514000	0	0	0	0	0	0	42965	2466	40453	261456	350585;350586	350586			2	
QYQIDAAIVR	0	Unmodified	1175.6299	0.62987176	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	51.677	50.933	2	4.7504E-05	43818	160511_QHF_FH_JSI11i_2	101.65	71.571			0.73673	0.82439	16.343	7	0	Median	0.92875	0.78072	16.558	2	0	Median	0.7028	0.84836	4.0546	2	0	Median	0.71717	0.71387	29.003	2	0	Median	0.6321	0.67597	NaN	1	0	Median	586090000	325200000	260890000	98390000	50574000	47815000	199690000	125400000	74285000	181350000	89012000	92338000	106660000	60207000	46453000	42966	2456;2457	40454	261457;261458;261459;261460;261461;261462;261463	350587;350588;350589;350590;350591;350592	350592			6	
QYQIPDVR	0	Unmodified	1017.5243	0.52434406	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.902	42.539	2	0.048848	38405	160511_QHF_FH_JSI11i_1	37.53	18.8			1.2912	1.2142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2912	1.2142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24781000	9727000	15054000	0	0	0	0	0	0	24781000	9727000	15054000	0	0	0	42967	3515	40455	261464	350593	350593			1	
QYQLLFTQGSGENK	1	Unmodified	1611.7893	0.78928553	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		2	2	2	2	58.796	58.081	2	3.4921E-21	52663	160511_QHF_FH_JSI11i_1	169.52	150.56			0.79481	0.83221	14.143	6	2	Median	1.2975	1.1382	NaN	1	1	Median	0.72977	0.86593	NaN	1	1	Median	0.79481	0.79872	0.19062	2	0	Median	0.79782	0.85304	11.336	2	0	Median	215400000	116770000	98639000	18228000	7349400	10878000	43126000	27121000	16005000	93787000	51643000	42145000	60264000	30653000	29611000	42968	3712	40456	261465;261466;261467;261468;261469;261470;261471;261472	350594;350595;350596;350597;350598;350599;350600;350601;350602;350603	350594			10	
QYQLLFTQGSGENKEEIINYEFDTK	2	Unmodified	2993.4294	0.4294472	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	87.137	87.005	3	1.3344E-12	75453	160511_QHF_FH_JSI12i_3	99.185	87.332			0.90586	0.90106	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90586	0.90106	NaN	1	0	Median	30024000	16225000	13800000	0	0	0	0	0	0	0	0	0	30024000	16225000	13800000	42969	3712	40457	261473	350604;350605;350606	350605			3	
QYRVEVYK	1	Unmodified	1083.5713	0.57129425	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	23.674	23.674	3	0.0058953	20024	160511_QHF_FH_JSI11i_3	47.198	32.991			1.3851	1.3231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3851	1.3231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	295700000	170370000	125330000	0	0	0	0	0	0	295700000	170370000	125330000	0	0	0	42970	1557	40458	261474;261475	350607;350608;350609	350608			3	
QYSGKFF	1	Acetyl (K)	917.42832	0.42831841	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	0.962					1	4	3	3		1	4	3	3	69.814	59.302	2	0.0022104	7976	160513_QHF_FH_JSI9Kac_3	107.66	102			0.85428	0.87876	13.442	11	0	Median	1.1918	0.97023	NaN	1	0	Median	0.87848	1.0431	6.4724	4	0	Median	0.88208	0.87381	10.486	3	0	Plateau	0.75195	0.82339	7.6597	3	0	Median	272630000	146010000	126620000	42200000	19309000	22892000	78521000	43564000	34957000	82616000	43883000	38732000	69289000	39252000	30037000	42971	1975	40459	261476;261477;261478;261479;261480;261481;261482;261483;261484;261485;261486	350610;350611;350612;350613;350614;350615;350616;350617;350618	350613	1994		9	
QYSGYLK	1	Unmodified	857.42832	0.42831841	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	23.384	22.175	2	0.045437	18410	160511_QHF_FH_JSI12i_2	44.692	29.253			1.011	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.011	1.1393	NaN	1	0	Median	150740000	67138000	83597000	0	0	0	0	0	0	0	0	0	150740000	67138000	83597000	42972	975	40460	261487	350619	350619			1	
QYSLQNWEAR	0	Unmodified	1293.6102	0.61019895	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.957	48.431	2	7.3587E-09	41735	160511_QHF_FH_JSI11i_2	144.77	129.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42973	1629	40461	261488	350620	350620			1	
QYSPLLAAFTTQGQSELTLLLK	1	Unmodified	2421.3155	0.31552706	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	100.49	96.228	3	6.3515E-17	51193	160513_QHF_FH_JSI9Kac_6	125.73	111.71			0.90813	0.94346	30.183	8	1	Median	0.94879	0.80543	15.864	2	0	Median	0.56376	0.67842	56.734	2	1	Median	1.0243	1.0085	2.9266	2	0	Median	0.90709	0.98906	28.081	2	0	Median	616890000	326310000	290580000	142850000	80739000	62115000	129000000	72627000	56370000	269940000	131580000	138360000	75099000	41367000	33732000	42974	3218	40462	261489;261490;261491;261492;261493;261494;261495;261496	350621;350622;350623;350624;350625;350626;350627;350628	350626			8	
QYTESQLR	0	Unmodified	1023.4985	0.49852324	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.973	14.729	2	0.01199	12322	160511_QHF_FH_JSI10i_1	53.166	8.7194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42975	2320	40463	261497	350629	350629			1	
QYTGINAISK	1	Unmodified	1093.5768	0.57677356	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	3	2	1	34.154	33.34	2	0.00056392	29400	160511_QHF_FH_JSI10i_2	86.879	56.143			1.1878	1.1128	63.873	8	6	Median	1.2106	1.0138	18.512	2	1	Median	1.2952	1.5088	33.654	3	3	Median	1.3052	1.2895	26.167	2	1	Median	0.2052	0.2299	NaN	1	1	Median	861040000	405700000	455340000	236390000	112090000	124300000	346260000	170600000	175660000	249170000	100020000	149150000	29210000	22985000	6224900	42976	1939	40464	261498;261499;261500;261501;261502;261503;261504;261505	350630;350631;350632;350633;350634;350635;350636;350637;350638	350638			9	
QYTGINAISKK	2	Unmodified	1221.6717	0.67173657	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.952	24.927	3	0.0025641	20689	160511_QHF_FH_JSI12i_3	36.39	28.339			0.8309	0.86759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8309	0.86759	NaN	1	0	Median	38092000	20289000	17803000	0	0	0	0	0	0	0	0	0	38092000	20289000	17803000	42977	1939	40465	261506	350639	350639			1	
QYTSPEEIDAQLQAEK	1	Unmodified	1848.8741	0.87413737	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	2	4	3	57.959	57.348	2;3	9.589E-52	51009	160511_QHF_FH_JSI9i_1	253.15	247.31			1.1828	1.1562	13.366	11	6	Median	1.6535	1.3506	21.983	2	0	Median	1.1163	1.3041	19.463	2	0	Median	1.2401	1.2205	10.408	4	4	Median	1.0532	1.113	1.7268	3	2	Median	2648000000	1178000000	1469900000	470160000	175280000	294880000	612410000	285800000	326610000	915870000	435660000	480220000	649530000	281300000	368230000	42978	2415	40466	261507;261508;261509;261510;261511;261512;261513;261514;261515;261516;261517	350640;350641;350642;350643;350644;350645;350646;350647;350648;350649;350650;350651;350652;350653;350654;350655;350656;350657;350658;350659;350660;350661	350658			22	
QYVAHIMTLK	1	Unmodified	1202.6482	0.64816436	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		16	0									3	1	1	1		53.493	44.309	3	0.0011162	23473	160513_QHF_FH_JSI9Kac_6	60.641	51.453			1.2732	1.1093	23.256	3	0	Median	1.2732	1.1093	NaN	1	0	Median	1.368	1.6282	NaN	1	0	Median	1.0856	1.0703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40216000	21008000	19208000	9598000	3242300	6355700	17781000	10941000	6840600	12837000	6825400	6011700	0	0	0	42979	3196	40467	261518;261519;261520	350662;350663;350664	350664			3	
QYVETHWCAQSEK	1	Unmodified	1664.7253	0.72530506	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.388	30.007	3	0.0074888	25409	160511_QHF_FH_JSI11i_2	42.469	30.701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42980	4193	40468	261521	350665	350665			1	
QYVGAAHGMAGIYYMLMQPAAK	1	Unmodified	2370.1323	0.13229986	4980	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	1	3	3	1	87.452	80.59	3	1.1576E-34	44514	160513_QHF_FH_JSI10Kac_6	211.89	198.57			1.0088	1.0988	13.773	7	5	Median	0.98354	0.82554	NaN	1	0	Median	0.97123	1.1442	5.3305	2	2	Median	1.0267	0.98591	13.32	3	2	Median	1.0385	1.0988	NaN	1	1	Median	1234000000	623660000	610390000	172050000	81946000	90104000	455580000	233170000	222410000	476860000	254100000	222760000	129560000	54440000	75118000	42981	4980	40469	261522;261523;261524;261525;261526;261527;261528;261529	350666;350667;350668;350669;350670;350671;350672;350673;350674;350675;350676	350676			11	
QYVIPGMFK	1	Unmodified	1081.563	0.56303775	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.262	69.371	2	0.00011447	61509	160511_QHF_FH_JSI10i_2	92.47	84.99			1.134	1.1482	8.5952	4	0	Median	1.207	1.0148	NaN	1	0	Median	0.89642	1.1063	NaN	1	0	Median	1.1578	1.1918	NaN	1	0	Median	1.1107	1.2311	NaN	1	0	Median	486920000	210860000	276060000	75223000	30542000	44681000	100610000	47967000	52644000	185480000	77324000	108160000	125600000	55030000	70570000	42982	1194	40470	261530;261531;261532;261533	350677;350678;350679;350680;350681;350682	350682			6	
QYVYGVLFSLAESR	0	Unmodified	1630.8355	0.83550744	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	90.642	82.151	2;3	1.6838E-17	47631	160513_QHF_FH_JSI10Kac_6	146.36	119.68			0.70641	0.78171	36.872	4	2	Median	NaN	NaN	NaN	0	0	Median	0.63195	0.74652	NaN	1	0	Median	0.45744	0.43163	NaN	1	1	Median	0.87391	0.91828	16.256	2	1	Median	542490000	316090000	226400000	0	0	0	224180000	120140000	104040000	157390000	113310000	44078000	160910000	82637000	78276000	42983	5147	40471	261534;261535;261536;261537	350683;350684;350685;350686	350686			4	
QYVYGVLFSLAETQR	0	Unmodified	1772.9097	0.90973501	5084	Q9NX05	FAM120C	Constitutive coactivator of PPAR-gamma-like protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.364	83.643	2	0.0030187	47416	160513_QHF_FH_JSI10Kac_6	80.312	63.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42984	5084	40472	261538	350687	350687			1	
QYVYNVAK	1	Unmodified	983.50763	0.50763136	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	28.632	27.797	2	0.016908	23345	160511_QHF_FH_JSI12i_2	56.122	39.582			0.69629	0.71757	34.588	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58501	0.56189	NaN	1	0	Median	0.82875	0.91639	NaN	1	0	Median	35685000	22613000	13073000	0	0	0	0	0	0	14819000	9767300	5052000	20866000	12845000	8020800	42985	1277	40473	261539;261540	350688;350689	350688			2	
QYWFIFK	1	Unmodified	1030.5276	0.52763852	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	86.029	76.905	2	0.00023291	42684	160513_QHF_FH_JSI11Kac_6	118.01	92.117			1.0886	1.0215	4.329	3	0	Median	1.1916	1.0421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0886	1.0215	NaN	1	0	Median	0.90631	0.95918	NaN	1	0	Median	980370000	450760000	529610000	320290000	136440000	183850000	0	0	0	372780000	172510000	200270000	287300000	141810000	145490000	42986	4363	40474	261541;261542;261543	350690;350691;350692;350693	350690			4	
QYYALEVSYFK	1	Unmodified	1409.6867	0.68671794	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	77.319	72.713	2	1.7884E-35	36898	160513_QHF_FH_JSI12Kac_6	192.38	175.71			0.97252	1.0401	13.412	8	0	Median	0.95574	0.82781	7.4648	2	0	Median	0.90715	1.0908	1.6591	2	0	Median	1.0744	1.0549	7.0791	2	0	Median	0.96486	1.0589	12.768	2	0	Median	769380000	374030000	395350000	194420000	90958000	103460000	179580000	96278000	83307000	218890000	102790000	116090000	176490000	84000000	92487000	42987	3905	40475	261544;261545;261546;261547;261548;261549;261550;261551	350694;350695;350696;350697;350698;350699;350700;350701;350702	350700			9	
QYYIGDIHPSDLKPESGSK	2	Unmodified	2133.0378	0.037848654	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	1	4	4	54.593	54.031	2;3;4	1.4653E-32	46081	160511_QHF_FH_JSI12i_3	167.22	159.52			1.0469	1.0424	44.225	9	4	Median	1.0707	0.90765	NaN	1	0	Median	0.77814	0.95625	NaN	1	1	Median	1.1564	1.1113	5.3258	3	1	Plateau	0.54522	0.57158	71.254	4	2	Linear	3410700000	2169400000	1241400000	162800000	78453000	84345000	132390000	67060000	65326000	599060000	280850000	318210000	2516500000	1743000000	773490000	42988	307	40476	261552;261553;261554;261555;261556;261557;261558;261559;261560;261561;261562	350703;350704;350705;350706;350707;350708;350709;350710;350711;350712;350713;350714;350715;350716;350717;350718;350719;350720	350715			18	
QYYTLLNQAPDMLHR	0	Oxidation (M)	1877.9094	0.90941744	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	8.29	6.69		2	2						3	1		3	3	63.313	58.994	3	2.3148E-05	50821	160511_QHF_FH_JSI12i_3	111.64	101.68			0.98322	1.0652	27.708	7	2	Median	1.9787	1.6217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82509	0.81494	28.589	3	0	Median	0.98322	1.0652	12.925	3	1	Median	504880000	222280000	282600000	6554200	2318800	4235400	0	0	0	248860000	100680000	148180000	249460000	119280000	130180000	42989	2381	40477	261563;261564;261565;261566;261567;261568;261569	350721;350722;350723;350724;350725;350726;350727;350728;350729;350730;350731	350729		1937	10	
QYYTLLNQAPDMLHR	0	Unmodified	1861.9145	0.91450282	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		11	7						3	6	4	6	5	73.721	71.87	2;3	1.4008E-80	62723	160511_QHF_FH_JSI12i_3	241.15	226.92			1.1503	1.0574	21.851	21	10	Median	1.207	0.99946	16.764	6	4	Median	0.94	1.1238	21.78	4	0	Median	1.1803	1.1539	19.116	6	3	Median	0.86612	0.95282	30.773	5	3	Median	4585200000	2259400000	2325800000	556680000	235350000	321330000	950410000	508950000	441450000	1458800000	691630000	767200000	1619300000	823450000	795810000	42990	2381	40477	261570;261571;261572;261573;261574;261575;261576;261577;261578;261579;261580;261581;261582;261583;261584;261585;261586;261587;261588;261589;261590	350732;350733;350734;350735;350736;350737;350738;350739;350740;350741;350742;350743;350744;350745;350746;350747;350748;350749;350750;350751;350752;350753;350754;350755;350756;350757;350758;350759;350760;350761;350762;350763	350760			32	
QYYVLCSSR	0	Unmodified	1174.5441	0.54409322	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0		By matching	By MS/MS	By matching	16	0									3		1	1	1	45.938	36.641	2	0.00044143	20056	160513_QHF_FH_JSI11Kac_6	96.331	84.841			0.94841	1.1338	24.001	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94841	1.1338	NaN	1	0	Median	0.77525	0.78381	NaN	1	0	Median	1.1408	1.2296	NaN	1	0	Median	21286000	11669000	9616600	0	0	0	8777500	4538100	4239400	7458700	4437900	3020800	5049400	2693100	2356400	42991	5017;5423	40478	261591;261592;261593	350764	350764			1	
RAAAASAAEAGIATTGTEDSDDALLK	1	Unmodified	2475.2089	0.20888974	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.739	53.187	3	2.5104E-17	44418	160511_QHF_FH_JSI10i_3	99.711	86.523			0.9003	1.0179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9003	1.0179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40761000	23122000	17640000	0	0	0	40761000	23122000	17640000	0	0	0	0	0	0	42992	1842	40479	261594	350765;350766	350766			2	
RAAAEVNQDYGLDPK	1	Unmodified	1645.806	0.80599822	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.59	4.69		8	6				1	2		2	4	5	6	31.964	29.57	2;3	2.3552E-05	25639	160511_QHF_FH_JSI9i_2	88.73	70.929			0.94522	0.96879	11.244	16	1	Median	1.2523	1.0605	8.1819	2	0	Median	0.81653	1.0021	14.528	3	0	Median	0.95004	0.90509	7.4571	5	1	Median	0.86275	0.90181	11.713	6	0	Median	3157800000	1683600000	1474200000	404130000	174790000	229340000	868880000	480190000	388700000	1411200000	759910000	651330000	473560000	268710000	204850000	42993	887	40480	261595;261596;261597;261598;261599;261600;261601;261602;261603;261604;261605;261606;261607;261608;261609;261610;261611	350767;350768;350769;350770;350771;350772;350773;350774;350775;350776;350777;350778;350779;350780;350781;350782;350783;350784;350785;350786;350787;350788;350789;350790;350791	350779			25	
RAAASLSQPEEEQK	1	Unmodified	1542.7638	0.76379906	5447	Q9UNS1	TIMELESS	Protein timeless homolog	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				67.74	66.842	3	0.055716	59057	160511_QHF_FH_JSI9i_2	12.833	0			1.0873	0.93361	NaN	1	0	Median	1.0873	0.93361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	344250000	164770000	179480000	344250000	164770000	179480000	0	0	0	0	0	0	0	0	0	42994	5447	40481	261612	350792	350792			1	
RAAATQPDAK	1	Unmodified	1027.5411	0.54105675	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	6.11			5					4	1	4	4	1	1	4.8278	0.15352	2;3	4.4105E-08	2237	160511_QHF_FH_JSI9i_3	147.41	130.48			0.8763	0.91139	54.232	8	0	Median	1.3243	0.95086	14.709	3	0	Plateau	0.74925	0.89068	87.69	3	0	Median	0.82652	0.81441	NaN	1	0	Median	0.77338	0.84845	NaN	1	0	Median	2462900000	1312100000	1150700000	1505900000	635980000	869880000	907760000	650800000	256970000	34914000	19213000	15701000	14317000	6119700	8197600	42995	3213	40482	261613;261614;261615;261616;261617;261618;261619;261620;261621;261622	350793;350794;350795;350796;350797;350798;350799;350800;350801;350802;350803;350804;350805;350806;350807	350800			15	
RAADEVLAEAK	1	Unmodified	1171.6197	0.619701	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	21.948	21.637	2;3	0.00034328	18123	160511_QHF_FH_JSI11i_3	74.698	39.977			0.97133	0.92282	24.358	6	2	Median	1.1163	0.9819	NaN	1	0	Median	0.45331	0.56384	NaN	1	1	Median	1.0476	0.9665	19.894	2	1	Median	0.94863	0.95146	13.1	2	0	Median	426590000	200060000	226540000	33182000	13754000	19428000	41511000	26942000	14569000	168910000	72602000	96304000	182990000	86757000	96236000	42996	3090	40483	261623;261624;261625;261626;261627;261628	350808;350809;350810;350811;350812;350813;350814;350815;350816;350817	350808			10	
RAAEDDEDDDVDTK	1	Unmodified	1592.6438	0.64380308	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	8.6048	7.5096	2;3	2.2573E-22	5939	160511_QHF_FH_JSI12i_1	182.57	165.55			0.88541	0.80565	26.696	9	0	Median	0.91627	0.75699	3.7733	2	0	Median	1.2404	1.4419	5.914	2	0	Median	0.83614	0.81173	9.9574	2	0	Median	0.78572	0.80565	5.0749	3	0	Plateau	1268600000	665140000	603450000	149090000	82316000	66773000	225250000	105280000	119970000	332140000	191570000	140560000	562120000	285970000	276150000	42997	849	40484	261629;261630;261631;261632;261633;261634;261635;261636;261637	350818;350819;350820;350821;350822;350823;350824;350825;350826	350820			9	
RAAEDDEDDDVDTKK	2	Unmodified	1720.7388	0.7387661	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.8	14	17	12					8		12	9	18	12	7.781	5.9203	2;3;4	4.4141E-31	5409	160511_QHF_FH_JSI10i_1	197.15	192.1			1.036	0.9858	20.285	47	9	Median	1.0928	0.89396	21.042	10	3	Median	1.0481	1.2372	9.8034	8	1	Median	1.0391	0.99819	16.11	17	3	Median	0.8822	0.92417	17.701	12	2	Median	12098000000	5451600000	6646100000	2300300000	1106400000	1194000000	2880500000	1215600000	1664800000	4116300000	1831500000	2284800000	2800600000	1298000000	1502600000	42998	849	40485	261638;261639;261640;261641;261642;261643;261644;261645;261646;261647;261648;261649;261650;261651;261652;261653;261654;261655;261656;261657;261658;261659;261660;261661;261662;261663;261664;261665;261666;261667;261668;261669;261670;261671;261672;261673;261674;261675;261676;261677;261678;261679;261680;261681;261682;261683;261684;261685;261686;261687;261688	350827;350828;350829;350830;350831;350832;350833;350834;350835;350836;350837;350838;350839;350840;350841;350842;350843;350844;350845;350846;350847;350848;350849;350850;350851;350852;350853;350854;350855;350856;350857;350858;350859;350860;350861;350862;350863;350864;350865;350866;350867;350868;350869;350870;350871;350872;350873;350874;350875;350876;350877;350878;350879;350880;350881;350882;350883;350884;350885;350886;350887;350888;350889;350890;350891;350892;350893;350894;350895;350896;350897;350898;350899;350900;350901;350902;350903;350904;350905;350906;350907;350908;350909;350910;350911;350912;350913;350914;350915;350916;350917	350865			88	
RAAEDDEDDDVDTKK	2	Acetyl (K)	1762.7493	0.74933079	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	1	0	0	2			By MS/MS	By MS/MS	14	1						1		1				1	1	18.263	10.043	3	0.00030822	7680	160513_QHF_FH_JSI12Kac_3	90.754	86.438			0.55736	0.5755	12.841	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54695	0.52555	NaN	1	0	Median	0.56797	0.6302	NaN	1	0	Median	17124000	10494000	6630200	0	0	0	0	0	0	2593900	1322300	1271600	14530000	9171400	5358700	42999	849	40485	261689;261690	350918;350919	350918	501		2	
RAAEEAEEAR	0	Unmodified	1130.5316	0.53161428	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			4.9948	4.5878	2	0.015139	2597	160511_QHF_FH_JSI10i_2	51.276	29.813			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43000	2636	40486	261691	350920	350920			1	
RAAEEEDEADPK	1	Unmodified	1358.595	0.5950024	1186	P20962	PTMS	Parathymosin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.5	6	7						1		3	3	5	3	6.3755	5.3785	2;3	0.00028431	4001	160511_QHF_FH_JSI12i_1	90.108	74.957			1.4237	1.3069	32.499	14	1	Median	1.5948	1.3247	5.3146	3	0	Plateau	1.6691	1.9915	23.63	3	0	Plateau	1.3825	1.4308	12.237	5	1	Median	1.0364	1.0944	16.071	3	0	Median	1301600000	546820000	754750000	255460000	88330000	167130000	168660000	63681000	104970000	463640000	191010000	272630000	413810000	203800000	210010000	43001	1186	40487	261692;261693;261694;261695;261696;261697;261698;261699;261700;261701;261702;261703;261704;261705	350921;350922;350923;350924;350925;350926;350927;350928;350929;350930;350931;350932;350933;350934	350923			14	
RAAEEEDEADPKR	1	Unmodified	1514.6961	0.69611342	1186	P20962	PTMS	Parathymosin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							2	2	1		5.8432	5.453	2;3	0.00011629	3387	160511_QHF_FH_JSI9i_2	95.428	77.939			0.79471	0.79399	58.593	5	1	Median	1.886	1.6143	15.583	2	0	Median	0.41959	0.51105	10.748	2	0	Median	0.79471	0.79399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	412190000	219710000	192480000	157850000	55242000	102610000	220630000	142890000	77736000	33714000	21578000	12135000	0	0	0	43002	1186	40488	261706;261707;261708;261709;261710	350935;350936;350937;350938;350939	350937			5	
RAAGDGGSGPPEK	1	Unmodified	1197.5738	0.57381344	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			5.093	4.6576	2	0.030573	2671	160511_QHF_FH_JSI10i_3	51.092	19.72			0.98938	0.99301	33.557	2	2	Median	0.91354	0.78325	NaN	1	1	Median	1.0715	1.2589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29416000	16094000	13323000	20300000	10785000	9515100	9115900	5308200	3807700	0	0	0	0	0	0	43003	482	40489	261711;261712	350940;350941	350940			2	
RAALEAAAAAAPER	0	Unmodified	1366.7317	0.73171107	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.293	23.954	3	0.020486	19465	160511_QHF_FH_JSI9i_3	24.429	22.188			2.2205	1.8334	NaN	1	0	Median	2.2205	1.8334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21250000	5978700	15272000	21250000	5978700	15272000	0	0	0	0	0	0	0	0	0	43004	3325	40490	261713	350942	350942			1	
RAASAATAAPTATPAAQESGTIPK	1	Unmodified	2238.1604	0.16042341	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							2	3			33.611	32.405	3	2.8577E-11	27034	160511_QHF_FH_JSI10i_3	95.926	91.059			1.2103	1.2121	31.908	4	1	Median	1.6886	1.3888	13.259	2	0	Median	0.78428	0.91515	33.749	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163070000	65964000	97111000	103930000	32338000	71588000	59149000	33626000	25523000	0	0	0	0	0	0	43005	93	40491	261714;261715;261716;261717;261718	350943;350944;350945;350946;350947;350948;350949;350950;350951;350952	350945			10	
RAASGYPVK	1	Unmodified	947.51886	0.51886475	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			7.7575	7.226	2;3	0.0056728	5032	160511_QHF_FH_JSI9i_3	55.549	21.753			1.0165	1.0987	4.4102	3	1	Median	1.3532	1.0987	NaN	1	0	Median	0.9641	1.1368	5.5788	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	396610000	186120000	210490000	184060000	72549000	111510000	212550000	113570000	98981000	0	0	0	0	0	0	43006	1283	40492	261719;261720;261721	350953;350954;350955	350955			3	
RAATLAQELEK	1	Unmodified	1228.6776	0.67755023	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				29.923	28.531	2;3	0.0016553	23249	160511_QHF_FH_JSI9i_3	60.49	45.614			0.99053	0.795	85.994	2	2	Median	0.99053	0.795	85.994	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100030000	51845000	48186000	100030000	51845000	48186000	0	0	0	0	0	0	0	0	0	43007	2560	40493	261722;261723	350956;350957;350958	350957			3	
RAAVAASSSS	0	Unmodified	905.45666	0.45665842	1967	P61927	RPL37	60S ribosomal protein L37	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.41	5.99	1	6	4			5	4	4	3	6	8	8	5	4.746	-1.813	2	8.3292E-09	2272	160511_QHF_FH_JSI9i_2	126.52	106.24			0.98354	1.0376	10.038	21	3	Median	1.3365	1.0998	9.1371	5	0	Median	0.91171	1.0734	6.8713	6	2	Median	1.019	1.0207	7.9193	6	1	Median	0.86467	0.92489	8.1739	4	0	Median	7022800000	3373100000	3649700000	1820900000	686560000	1134400000	3365800000	1741100000	1624600000	1655200000	848930000	806230000	180970000	96493000	84477000	43008	1967	40494	261724;261725;261726;261727;261728;261729;261730;261731;261732;261733;261734;261735;261736;261737;261738;261739;261740;261741;261742;261743;261744;261745;261746;261747;261748;261749;261750	350959;350960;350961;350962;350963;350964;350965;350966;350967;350968;350969;350970;350971;350972;350973;350974;350975;350976;350977;350978;350979;350980;350981;350982;350983;350984;350985;350986;350987;350988;350989;350990;350991;350992;350993;350994;350995;350996;350997;350998;350999;351000;351001;351002	350980			44	
RAAVGQESPGGLEAGNAK	1	Unmodified	1710.8649	0.86491009	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			20.648	19.609	3	4.723E-05	15668	160511_QHF_FH_JSI9i_3	69.081	62.042			0.96294	0.97454	24.585	4	0	Median	0.93763	0.78592	12.72	2	0	Median	0.96294	1.1702	8.1756	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191870000	100860000	91006000	89676000	44893000	44783000	102190000	55969000	46223000	0	0	0	0	0	0	43009	2789	40495	261751;261752;261753;261754	351003;351004;351005;351006;351007	351004			5	
RADAGEKPK	2	Acetyl (K)	1012.5302	0.53015772	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	2			By MS/MS	By MS/MS	14.5	0.5							2	2				2	2	6.8656	-1.6429	3	0.0027676	2441	160513_QHF_FH_JSI12Kac_4	78.655	55.915			0.82519	0.85215	26.948	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0832	1.0602	39.499	2	1	Median	0.76704	0.84412	9.941	2	0	Median	52990000	27367000	25623000	0	0	0	0	0	0	24468000	11058000	13410000	28521000	16308000	12213000	43010	1609	40496	261755;261756;261757;261758	351008;351009;351010;351011	351009	1635		4	
RADDNATIR	0	Unmodified	1030.5156	0.51557028	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	3	3	5.5217	5.2518	2;3	1.4901E-05	3224	160511_QHF_FH_JSI10i_2	109.42	45.854			0.96306	0.99896	19.658	11	0	Median	1.4534	1.2469	2.9715	2	0	Median	0.82496	0.99981	18.796	3	0	Plateau	0.97869	0.90175	5.5557	3	0	Median	0.75697	0.75881	18.91	3	0	Plateau	868580000	434330000	434250000	150590000	59507000	91083000	327500000	170570000	156930000	241800000	126160000	115640000	148680000	78093000	70591000	43011	570	40497	261759;261760;261761;261762;261763;261764;261765;261766;261767;261768;261769	351012;351013;351014;351015;351016;351017;351018;351019	351017			8	
RADLNQGIGEPQSPSR	0	Unmodified	1723.8602	0.86015906	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.6	6.05		1	2					2		1	1	2	1	30.331	24.94	3	4.6711E-06	20766	160511_QHF_FH_JSI10i_3	92.264	74.248			1.0014	1.0971	28.45	4	1	Median	0.71871	0.63392	NaN	1	1	Median	0.98411	1.1562	NaN	1	0	Median	1.0861	1.0762	NaN	1	0	Median	1.019	1.1183	NaN	1	0	Median	164970000	90334000	74639000	100790000	56990000	43798000	56835000	29556000	27280000	5772400	2925300	2847100	1578000	863620	714350	43012	3998	40498	261770;261771;261772;261773;261774	351020;351021;351022;351023;351024	351021			5	
RADPAELR	0	Unmodified	926.49338	0.49337828	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		9.8521	9.4027	2	0.0032595	7074	160511_QHF_FH_JSI11i_3	74.301	37.6			0.94468	1.085	14.366	5	0	Median	1.418	1.188	7.0946	2	0	Median	0.85846	1.0172	9.1301	2	0	Median	0.93342	0.86693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	442840000	220920000	221920000	136970000	60006000	76965000	227360000	122550000	104800000	78510000	38358000	40152000	0	0	0	43013	5345	40499	261775;261776;261777;261778;261779	351025;351026;351027;351028;351029;351030;351031;351032;351033	351026			9	
RADSLQK	1	Unmodified	816.44537	0.44536545	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	3.9983	3.7672	2	0.012361	1610	160511_QHF_FH_JSI11i_3	69.825	21.976			0.79775	0.86997	70.064	6	1	Median	1.2296	1.0449	NaN	1	0	Median	0.87958	1.0328	38.015	2	0	Median	0.74754	0.71777	40.942	2	0	Median	0.1863	0.1916	NaN	1	1	Median	644430000	365050000	279380000	141430000	62258000	79174000	323490000	182410000	141080000	142390000	89202000	53183000	37122000	31175000	5946300	43014	1194	40500	261780;261781;261782;261783;261784;261785	351034;351035;351036;351037;351038;351039;351040	351035			7	
RAEATAASTSR	0	Unmodified	1119.5632	0.56324876	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.8	5.88			3					2		2	2	1		4.6493	0.55148	2;3	4.8698E-13	2095	160511_QHF_FH_JSI9i_3	147.26	93.291			1.2852	1.2481	24.355	5	0	Median	1.4549	1.1663	15.733	2	0	Median	0.84237	0.97338	39.975	2	0	Median	1.2852	1.2481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	459040000	212610000	246430000	332080000	135480000	196600000	123300000	75372000	47931000	3648500	1757900	1890600	0	0	0	43015	720	40501	261786;261787;261788;261789;261790	351041;351042;351043;351044;351045	351042			5	
RAEDGSVIDYELIDQDAR	0	Unmodified	2063.976	0.97597668	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.497		11	9							4	2	6	8	62.525	61.984	2;3	1.2409E-11	52861	160511_QHF_FH_JSI12i_3	135.09	125.68			0.98425	1.0156	39.55	12	8	Median	1.8426	1.6268	29.355	2	1	Median	0.86926	1.0468	NaN	1	1	Median	1.0266	1.0183	61.756	3	1	Plateau	0.96867	0.99679	7.7479	6	5	Median	788270000	394560000	393710000	47572000	12994000	34577000	146260000	85300000	60957000	116680000	70436000	46240000	477760000	225830000	251940000	43016	870	40502	261791;261792;261793;261794;261795;261796;261797;261798;261799;261800;261801;261802;261803;261804;261805;261806;261807;261808;261809;261810	351046;351047;351048;351049;351050;351051;351052;351053;351054;351055;351056;351057;351058;351059;351060;351061;351062;351063;351064;351065;351066;351067	351063			22	
RAEDGSVIDYELIDQDARDLYDAGVK	1	Unmodified	2925.3992	0.39920971	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.496		7	9							3	3	4	6	92.029	91.845	3;4	1.4678E-20	79068	160511_QHF_FH_JSI12i_3	115.45	110.48			1.041	1.1285	26.547	15	4	Median	1.041	0.91082	35.889	3	0	Median	0.85042	1.0399	9.4323	3	0	Median	1.2061	1.1873	17.352	4	0	Median	1.1269	1.1481	34.765	5	4	Median	1121900000	522400000	599480000	85618000	43115000	42503000	202180000	101650000	100530000	355590000	161450000	194140000	478490000	216170000	262310000	43017	870	40503	261811;261812;261813;261814;261815;261816;261817;261818;261819;261820;261821;261822;261823;261824;261825;261826	351068;351069;351070;351071;351072;351073;351074;351075;351076;351077;351078;351079;351080;351081;351082;351083;351084;351085;351086	351079			18	
RAEDYPIDLYYLMDLSYSMK	1	Unmodified	2485.1545	0.15453467	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.002	90.281	3	8.9098E-07	52189	160513_QHF_FH_JSI10Kac_6	86.546	63.099			1.0726	1.2902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0726	1.2902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149080000	85356000	63721000	0	0	0	149080000	85356000	63721000	0	0	0	0	0	0	43018	841	40504	261827	351087	351087			1	
RAEEFLTASQEAL	0	Unmodified	1463.7256	0.72562264	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	59.326	58.486	2	5.998E-05	50181	160511_QHF_FH_JSI12i_2	107.83	90.395			1.0964	1.0477	13.102	5	2	Median	1.2358	1.0477	NaN	1	0	Median	0.79479	0.99165	NaN	1	0	Median	1.1584	1.1832	18.521	2	2	Median	1.0964	1.2323	NaN	1	0	Median	758760000	369650000	389120000	95087000	47999000	47088000	171140000	111330000	59816000	381640000	156320000	225320000	110890000	54001000	56892000	43019	2570	40505	261828;261829;261830;261831;261832	351088;351089;351090;351091;351092;351093	351089			6	
RAEEIWQQSVIGDYLAR	0	Unmodified	2033.033	0.033038048	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			82.129	81.463	3	0.038156	72461	160511_QHF_FH_JSI10i_2	29.603	20.129			1.3529	1.6732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3529	1.6732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30860000	12522000	18338000	0	0	0	30860000	12522000	18338000	0	0	0	0	0	0	43020	1117	40506	261833	351094	351094			1	
RAEEKIK	2	Acetyl (K)	914.51853	0.5185304	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		8.1995	-1.2986	3	0.05331	3131	160513_QHF_FH_JSI11Kac_5	53.968	15.005			0.28027	0.27586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28027	0.27586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5419700	3888700	1531000	0	0	0	0	0	0	5419700	3888700	1531000	0	0	0	43021	1589	40507	261834	351095	351095			1	
RAEENALQQK	1	Unmodified	1185.6102	0.61019895	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	3	4	1	7.1949	6.9886	2;3	1.8634E-05	5035	160511_QHF_FH_JSI10i_2	105.98	73.655			0.70461	0.68427	22.179	7	2	Median	0.89522	0.78122	NaN	1	0	Median	0.56481	0.67983	0.92128	2	2	Median	0.81056	0.75816	32.726	3	0	Plateau	0.79646	0.79972	NaN	1	0	Median	508390000	280970000	227420000	57223000	24105000	33119000	127380000	69257000	58120000	271200000	156610000	114590000	52596000	31002000	21594000	43022	1085	40508	261835;261836;261837;261838;261839;261840;261841;261842;261843	351096;351097;351098;351099;351100;351101;351102;351103;351104;351105;351106;351107;351108	351106			13	
RAEEQMLK	1	Unmodified	1003.5121	0.51206481	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	4	3	9.6257	9.4178	2;3	0.0018623	6654	160511_QHF_FH_JSI12i_3	51.193	27.764			0.86123	0.75582	36.477	9	0	Median	0.9023	0.75582	NaN	1	0	Median	0.57251	0.68768	NaN	1	0	Median	0.81984	0.79496	46.654	4	0	Median	1.1216	1.1283	38.274	3	0	Plateau	1213200000	650470000	562720000	74084000	37810000	36274000	118130000	76309000	41819000	474720000	258000000	216720000	546260000	278350000	267900000	43023	2502	40509	261844;261845;261846;261847;261848;261849;261850;261851;261852	351109;351110;351111;351112;351113;351114;351115;351116;351117;351118;351119	351118			11	
RAEFTVETR	0	Unmodified	1107.5673	0.5672715	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.29		5	5					1	4	6	5	3	1	20.807	17.466	2;3	1.0351E-05	14131	160511_QHF_FH_JSI9i_3	111.46	47.191			1.0802	1.0382	16.462	15	0	Median	1.272	1.0764	11.723	6	0	Median	0.76515	0.92017	11.226	5	0	Median	1.0802	1.0065	29.526	3	0	Median	1.0175	1.113	NaN	1	0	Median	2543000000	1283400000	1259600000	897700000	367720000	529970000	1479900000	835660000	644210000	159950000	77651000	82298000	5434600	2335700	3099000	43024	1192	40510	261853;261854;261855;261856;261857;261858;261859;261860;261861;261862;261863;261864;261865;261866;261867	351120;351121;351122;351123;351124;351125;351126;351127;351128;351129;351130;351131;351132;351133;351134;351135;351136;351137;351138;351139;351140;351141	351128			20	
RAEGDIKPYSSSDREFLK	2	Acetyl (K)	2139.0596	0.059646729	2924	Q5SQI0	ATAT1	Alpha-tubulin N-acetyltransferase 1	yes	yes	1	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	54.082	44.739	3	0.00018011	24254	160513_QHF_FH_JSI11Kac_6	82.813	47.859			1.0053	1.0938	86.739	4	0	Median	3.9403	3.341	NaN	1	0	Median	1.6033	1.9353	NaN	1	0	Median	0.63038	0.61823	NaN	1	0	Median	0.52631	0.57435	NaN	1	0	Median	69529000	35434000	34095000	11682000	3452000	8230500	20442000	7586600	12855000	20724000	12104000	8619600	16680000	12291000	4389100	43025	2924	40511	261868;261869;261870;261871	351142;351143;351144	351142	2718		3	
RAEISNAIDQYVTGTIGEDEDLIK	1	Unmodified	2649.3134	0.31335481	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.492		10	7							5	7	4	1	97.762	97.61	3	9.5635E-18	85501	160511_QHF_FH_JSI9i_2	133.58	121.15			0.91281	0.88385	16.544	13	8	Median	1.0927	0.94142	16.651	5	4	Median	0.70676	0.824	16.056	6	4	Median	0.94001	0.91134	18.779	2	0	Median	NaN	NaN	NaN	0	0	Median	571300000	280390000	290910000	181600000	81790000	99810000	254000000	139020000	114980000	135700000	59582000	76118000	0	0	0	43026	1381	40512	261872;261873;261874;261875;261876;261877;261878;261879;261880;261881;261882;261883;261884;261885;261886;261887;261888	351145;351146;351147;351148;351149;351150;351151;351152;351153;351154;351155;351156;351157;351158;351159;351160;351161;351162;351163;351164;351165;351166	351156			22	
RAELILLK	1	Unmodified	954.6226	0.62260154	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	44.925	44.325	3	0.0083617	38826	160511_QHF_FH_JSI11i_3	48.283	24.855			0.91385	0.97678	10.523	3	3	Median	NaN	NaN	NaN	0	0	Median	0.91385	1.0258	NaN	1	1	Median	1.0742	0.97678	NaN	1	1	Median	0.83084	0.83836	NaN	1	1	Median	91215000	51734000	39481000	0	0	0	28994000	20623000	8371000	32951000	14535000	18415000	29270000	16576000	12695000	43027	3423	40513	261889;261890;261891	351167;351168;351169	351167			3	
RAESMLQQADK	1	Unmodified	1275.6241	0.62413446	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							4	4	5	2	15.165	14.669	2;3	4.7188E-07	12194	160511_QHF_FH_JSI10i_2	116.24	83.918			1.1642	1.0913	40.607	15	3	Median	0.97518	0.82861	21.706	4	0	Linear	0.61393	0.7392	18.005	4	0	Median	1.2794	1.2299	53.387	5	3	Median	1.2003	1.2172	3.2197	2	0	Median	3380300000	1679500000	1700800000	896230000	318330000	577890000	1220400000	752780000	467620000	1115300000	529630000	585670000	148350000	78736000	69615000	43028	1039	40514	261892;261893;261894;261895;261896;261897;261898;261899;261900;261901;261902;261903;261904;261905;261906	351170;351171;351172;351173;351174;351175;351176;351177;351178;351179;351180;351181;351182;351183;351184;351185	351182			16	
RAESMLQQADK	1	Oxidation (M)	1291.619	0.61904908	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.2	3.6			9					1		2	2	5	1	11.967	10.718	2;3	6.0555E-05	11927	160511_QHF_FH_JSI11i_3	90.614	82.509			0.86453	0.84013	61.355	10	5	Median	1.1493	0.94968	24.293	2	1	Median	1.1205	1.2745	51.981	2	0	Median	0.57396	0.56415	71.435	5	4	Median	0.43031	0.44423	NaN	1	0	Median	601090000	316420000	284660000	46030000	17849000	28181000	215400000	101760000	113640000	314260000	180310000	133940000	25399000	16498000	8901400	43029	1039	40514	261907;261908;261909;261910;261911;261912;261913;261914;261915;261916	351186;351187;351188;351189;351190;351191;351192;351193;351194	351189		659	9	
RAEVLALPFK	1	Unmodified	1142.6812	0.68117905	5025	Q9NV88	INTS9	Integrator complex subunit 9	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		60.537	59.775	3	0.0065574	52837	160511_QHF_FH_JSI11i_3	47.302	32.364			0.50808	0.52751	50.431	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31711	0.36929	NaN	1	1	Median	0.81407	0.75354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28822000	18768000	10053000	0	0	0	14779000	10547000	4232300	14043000	8221800	5820900	0	0	0	43030	5025	40515	261917;261918	351195;351196	351195			2	
RAEVLGHK	1	Unmodified	908.5192	0.5191991	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		5.5516	5.2118	2;3	0.0011475	3228	160511_QHF_FH_JSI10i_3	101.54	55.116			0.82618	0.7805	21.453	6	1	Median	1.2237	0.99421	8.1683	2	0	Median	0.53763	0.62766	6.0916	2	0	Median	0.82618	0.7805	8.9409	2	1	Median	NaN	NaN	NaN	0	0	Median	1291300000	752770000	538490000	485680000	213470000	272210000	389900000	260890000	129010000	415690000	278420000	137270000	0	0	0	43031	5298	40516	261919;261920;261921;261922;261923;261924	351197;351198;351199;351200;351201;351202;351203	351199			7	
RAEVNGLAAQGK	1	Unmodified	1212.6575	0.65748349	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		12.585	12.077	2;3	8.2645E-05	9542	160511_QHF_FH_JSI10i_3	56.087	52.232			0.75944	0.87007	108.23	3	1	Median	NaN	NaN	NaN	0	0	Median	0.89732	1.013	21.508	2	0	Median	0.16702	0.15833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	169970000	111790000	58182000	0	0	0	113080000	64105000	48979000	56886000	47683000	9203000	0	0	0	43032	944	40517	261925;261926;261927	351204;351205;351206	351206			3	
RAEVSPMYGVQK	1	Unmodified	1363.6918	0.69182009	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	2	3	2	26	25.455	2;3	3.564E-05	21653	160511_QHF_FH_JSI11i_3	122.7	82.698			0.9331	0.81665	23.541	8	3	Plateau	0.62466	0.50731	NaN	1	0	Median	0.78851	0.90113	15.648	2	1	Median	0.94586	0.9114	25.949	3	1	Plateau	0.79379	0.79967	4.6977	2	1	Median	575650000	340500000	235160000	26598000	15203000	11394000	156860000	89959000	66899000	273430000	159600000	113830000	118770000	75736000	43030000	43033	4694	40518	261928;261929;261930;261931;261932;261933;261934;261935	351207;351208;351209;351210;351211;351212;351213;351214	351208			8	
RAEYFDGSEPVQNR	0	Unmodified	1666.7699	0.76994707	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			27.828	26.518	3	0.0021654	21950	160511_QHF_FH_JSI10i_3	42.52	30.374			0.33381	0.37106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33381	0.37106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29205000	22818000	6387200	0	0	0	29205000	22818000	6387200	0	0	0	0	0	0	43034	4863	40519	261936	351215	351215			1	
RAFDSAVAK	1	Unmodified	963.51378	0.51377937	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							3	3	2		12.663	12.096	2;3	0.00014441	9502	160511_QHF_FH_JSI9i_3	99.815	47.961			0.91756	0.93596	35.998	8	0	Median	1.2126	0.97893	24.595	3	0	Median	0.569	0.65603	18.315	3	0	Median	1.4655	1.3919	44.386	2	0	Median	NaN	NaN	NaN	0	0	Median	2220700000	1116300000	1104400000	1112700000	525980000	586680000	695790000	430150000	265640000	412270000	160140000	252120000	0	0	0	43035	2780	40520	261937;261938;261939;261940;261941;261942;261943;261944	351216;351217;351218;351219;351220;351221;351222;351223;351224;351225;351226;351227	351222			11	
RAFIITGQTYTR	0	Unmodified	1425.7728	0.7728476	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	1	By matching	By MS/MS			16	0									2	1	1			48.012	39.095	3	0.00044124	21549	160513_QHF_FH_JSI10Kac_6	63.181	49.767			1.091	1.0688	19.24	2	0	Median	1.4678	1.2246	NaN	1	0	Median	0.81091	0.93288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32507000	16837000	15670000	16693000	7096500	9596900	15813000	9740600	6072800	0	0	0	0	0	0	43036	1359	40521	261945;261946	351228;351229	351229			2	
RAFLIEEQK	1	Unmodified	1132.6241	0.6240581	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.73		6	7						4	5	5	4	3	32.075	29.165	2;3	1.9212E-06	23608	160511_QHF_FH_JSI9i_3	129.38	58.464			0.85372	0.9091	16.542	16	0	Median	1.1941	0.93652	22.52	5	0	Median	0.8262	0.97646	15.69	5	0	Median	0.86395	0.8777	9.925	4	0	Median	0.81081	0.84106	26.573	2	0	Median	7259300000	3602100000	3657200000	3478100000	1616300000	1861800000	2583400000	1340500000	1243000000	1082500000	582230000	500250000	115250000	63180000	52072000	43037	1646	40522	261947;261948;261949;261950;261951;261952;261953;261954;261955;261956;261957;261958;261959;261960;261961;261962;261963	351230;351231;351232;351233;351234;351235;351236;351237;351238;351239;351240;351241;351242;351243;351244;351245;351246;351247;351248;351249;351250;351251;351252;351253;351254;351255;351256;351257	351239			28	
RAGAADSAPYPGGGGNGASGGGSGGSK	1	Unmodified	2218.9951	0.99514899	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				13.82	12.927	3	0.046037	10074	160511_QHF_FH_JSI9i_3	16.532	13.039			1.168	0.98766	NaN	1	0	Median	1.168	0.98766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11222000	4347100	6875400	11222000	4347100	6875400	0	0	0	0	0	0	0	0	0	43038	401	40523	261964	351258;351259	351258			2	
RAGELTEDEVER	0	Unmodified	1402.6688	0.66883604	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.33		10	8					8	4	7	8	8	7	20.773	16.777	2;3	5.1691E-23	13892	160511_QHF_FH_JSI11i_2	178.81	143.3			0.94926	1.0147	15.992	30	4	Median	1.2595	1.0498	6.3031	7	0	Median	0.84737	1.0306	11.697	8	1	Median	1.0316	0.98449	20.418	8	1	Median	0.83244	0.91885	13.757	7	2	Median	7914200000	3997200000	3917000000	1919500000	840650000	1078900000	2316400000	1277100000	1039300000	2861600000	1399700000	1461900000	816650000	479670000	336980000	43039	1993	40524	261965;261966;261967;261968;261969;261970;261971;261972;261973;261974;261975;261976;261977;261978;261979;261980;261981;261982;261983;261984;261985;261986;261987;261988;261989;261990;261991;261992;261993;261994	351260;351261;351262;351263;351264;351265;351266;351267;351268;351269;351270;351271;351272;351273;351274;351275;351276;351277;351278;351279;351280;351281;351282;351283;351284;351285;351286;351287;351288;351289;351290;351291;351292;351293;351294;351295;351296;351297;351298	351280			38	
RAGGEESQFEMDI	0	Unmodified	1467.63	0.63000769	2435	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	54.995	54.238	2	6.4728E-05	46450	160511_QHF_FH_JSI12i_2	105.86	90.292			0.92783	1.0455	10.773	7	2	Median	1.2615	1.0605	NaN	1	1	Median	0.90162	1.0691	3.1549	2	0	Median	1.0136	1.0027	15.094	2	1	Median	0.85957	0.92373	14.525	2	0	Median	484920000	230730000	254190000	61650000	25576000	36074000	122570000	67119000	55449000	151730000	62983000	88749000	148970000	75052000	73917000	43040	2435	40525	261995;261996;261997;261998;261999;262000;262001	351299;351300;351301;351302;351303;351304;351305	351300			7	
RAHTEEPQAK	1	Unmodified	1165.584	0.5839842	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	5.6	5.2			4						1	2	2		1	4.5953	2.8209	2;3	2.4441E-08	2059	160511_QHF_FH_JSI10i_3	114.89	97.085			0.94152	1.0694	20.273	5	0	Median	1.5767	1.2675	0.4366	2	0	Median	0.84503	0.97163	13.554	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70882	0.81645	NaN	1	0	Median	985750000	516510000	469240000	534760000	269520000	265240000	448460000	245470000	202990000	0	0	0	2531900	1520600	1011300	43041	4348	40526	262002;262003;262004;262005;262006	351306;351307;351308;351309;351310;351311	351306			6	
RAIELATTLDESLTNR	0	Unmodified	1801.9534	0.95339074	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				65.845	64.349	3	0.0014059	52778	160511_QHF_FH_JSI9i_3	42.58	39.076			1.5013	1.2256	NaN	1	1	Median	1.5013	1.2256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44975000	23422000	21553000	44975000	23422000	21553000	0	0	0	0	0	0	0	0	0	43042	4518	40527	262007	351312	351312			1	
RAISTPETPLTK	1	Unmodified	1312.7351	0.73506511	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			33.375	31.966	3	0.00029514	26126	160511_QHF_FH_JSI9i_3	53.754	27.127			0.86333	0.81914	17.402	2	1	Median	1.1447	0.9264	NaN	1	0	Median	0.65115	0.7243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73428000	32597000	40831000	44237000	14873000	29365000	29191000	17724000	11467000	0	0	0	0	0	0	43043	2510	40528	262008;262009	351313;351314	351314			2	
RALADTENLR	0	Unmodified	1157.6153	0.61528433	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			18.239	17.208	2	0.0066656	14499	160511_QHF_FH_JSI9i_2	52.579	34.139			0.9454	1.0854	13.813	3	0	Plateau	1.124	0.95075	19.069	2	0	Median	0.77791	0.90267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130840000	65453000	65385000	93592000	44840000	48752000	37246000	20613000	16633000	0	0	0	0	0	0	43044	4832	40529	262010;262011;262012	351315;351316	351316			2	
RALANSLACQGK	1	Unmodified	1287.6718	0.67175335	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	9.5	6.5			2						2		3		1	19.46	15.379	2;3	6.3615E-05	12362	160511_QHF_FH_JSI10i_3	55.578	40.899			1.1687	1.3651	13.601	4	1	Median	NaN	NaN	NaN	0	0	Median	1.355	1.5233	11.656	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0928	1.201	NaN	1	0	Median	136930000	65857000	71077000	0	0	0	133500000	63927000	69576000	0	0	0	3430600	1929400	1501200	43045	803	40530	262013;262014;262015;262016	351317;351318;351319;351320	351317			4	
RALASIDSK	1	Unmodified	959.53999	0.53999412	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			4							1	2	1		13.409	12.783	2;3	0.034583	9976	160511_QHF_FH_JSI10i_3	39.305	2.9094			0.76721	1.079	44.121	4	1	Linear	0.78581	0.64215	NaN	1	0	Median	0.46704	0.53473	69.583	2	1	Median	0.8346	0.78385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	363940000	174400000	189540000	37626000	20874000	16752000	252020000	113000000	139010000	74298000	40524000	33773000	0	0	0	43046	1139	40531	262017;262018;262019;262020	351321;351322	351321			2	
RALDDTAR	0	Unmodified	916.47264	0.47264284	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			6.1632	5.7411	2	0.0052203	3691	160511_QHF_FH_JSI9i_2	66.568	22.798			1.0954	1.1193	7.6814	2	0	Median	1.4072	1.1818	NaN	1	0	Median	0.85277	1.0601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143500000	61816000	81679000	75018000	25639000	49379000	68478000	36178000	32300000	0	0	0	0	0	0	43047	1180	40532	262021;262022	351323;351324	351323			2	
RALDIPLVK	1	Unmodified	1023.6441	0.64406526	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.88	0.331		1	7							3	2	2	1	51.348	50.413	2;3	0.010429	42284	160511_QHF_FH_JSI10i_3	37.344	16.474			0.92065	0.93903	16.61	7	0	Median	1.3057	1.0652	4.7476	2	0	Median	0.86729	1.0044	9.5194	2	0	Median	0.94259	0.86441	6.6665	2	0	Median	0.66559	0.68846	NaN	1	0	Median	390420000	201270000	189150000	100080000	47946000	52136000	104130000	58674000	45455000	161020000	79297000	81720000	25196000	15356000	9840200	43048	3101	40533	262023;262024;262025;262026;262027;262028;262029;262030	351325;351326;351327;351328;351329;351330;351331;351332	351327			8	
RALDLNLK	1	Unmodified	941.56581	0.56581494	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.442		4	11							6	5	2	2	33.477	32.612	2;3	0.00015471	26860	160511_QHF_FH_JSI9i_3	101.64	58.397			1.1502	1.0947	61.73	13	6	Median	1.3627	1.0996	36.037	4	3	Linear	0.84882	0.99755	93.467	5	3	Median	1.0373	0.99415	14.559	2	0	Median	0.81894	0.83944	6.8291	2	0	Median	1781200000	850050000	931140000	500250000	207140000	293110000	606380000	295570000	310800000	551110000	270410000	280690000	123450000	76918000	46534000	43049	1066	40534	262031;262032;262033;262034;262035;262036;262037;262038;262039;262040;262041;262042;262043;262044;262045	351333;351334;351335;351336;351337;351338;351339;351340;351341;351342;351343;351344;351345;351346;351347;351348;351349;351350;351351;351352;351353;351354;351355;351356;351357	351348			25	
RALDVIQAGK	1	Unmodified	1069.6244	0.62439245	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		26.203	25.203	2;3	0.00011794	20488	160511_QHF_FH_JSI9i_3	96.342	69.088			0.85133	0.95818	11.83	4	0	Linear	0.96267	0.78189	18.151	2	0	Median	0.75904	0.87839	NaN	1	0	Median	0.84415	0.8102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299500000	165840000	133660000	167390000	90152000	77243000	70260000	38718000	31542000	61845000	36969000	24876000	0	0	0	43050	587	40535	262046;262047;262048;262049	351358;351359;351360	351359			3	
RALELDGQSVK	1	Unmodified	1214.6619	0.66190017	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		25.316	25.316	2;3	0.0087572	21102	160511_QHF_FH_JSI10i_3	41.48	23.407			1.0752	1.008	6.2968	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0752	1.008	6.2968	2	0	Median	NaN	NaN	NaN	0	0	Median	69014000	29578000	39436000	0	0	0	0	0	0	69014000	29578000	39436000	0	0	0	43051	5434	40536	262050;262051;262052	351361;351362;351363	351363			3	
RALEQQVEEMK	1	Oxidation (M)	1375.6766	0.67656396	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		10.2	5.88			2					3		2	1	2		18.882	13.02	3	0.0079482	8931	160513_QHF_FH_JSI11Kac_5	42.083	35.202			1.1618	1.0632	10.959	5	1	Median	1.2071	1.014	6.7052	2	1	Median	1.0595	1.2487	NaN	1	0	Median	1.1201	1.0768	12.062	2	0	Median	NaN	NaN	NaN	0	0	Median	89985000	46047000	43938000	6584500	2723400	3861200	19327000	8020800	11306000	64074000	35303000	28770000	0	0	0	43052	1436	40537	262053;262054;262055;262056;262057	351364;351365;351366;351367;351368	351368		1106	5	
RALEQQVEEMK	1	Unmodified	1359.6816	0.68164933	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.86		8	6					5	1	5	7	5	3	29.636	26.058	2;3	1.9427E-09	21704	160511_QHF_FH_JSI11i_2	132.17	98.211			1.1481	1.0551	28.247	18	2	Median	1.2966	1.1011	26.634	5	2	Median	1.1925	1.4488	4.4306	5	0	Median	0.9767	0.95056	8.9805	5	0	Median	0.78516	0.88744	32.448	3	0	Median	3758900000	1803200000	1955700000	474220000	220700000	253520000	890420000	394490000	495920000	1986700000	967560000	1019100000	407580000	220470000	187110000	43053	1436	40537	262058;262059;262060;262061;262062;262063;262064;262065;262066;262067;262068;262069;262070;262071;262072;262073;262074;262075;262076;262077	351369;351370;351371;351372;351373;351374;351375;351376;351377;351378;351379;351380;351381;351382;351383;351384;351385;351386;351387;351388;351389;351390;351391;351392;351393;351394;351395;351396;351397;351398;351399	351385			30	
RALIAGGGAPEIELALR	0	Unmodified	1705.9839	0.98390301	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			74.795	73.355	3	0.033458	61502	160511_QHF_FH_JSI10i_3	31.082	23.168			1.3193	1.4714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3193	1.4714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39601000	17766000	21835000	0	0	0	39601000	17766000	21835000	0	0	0	0	0	0	43054	1722	40538	262078	351400	351400			1	
RALIQCAK	1	Unmodified	958.53822	0.53821998	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			15.647	8.8104	3	0.0045757	6088	160513_QHF_FH_JSI10Kac_6	54.157	35.718			0.81746	0.97324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81746	0.97324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17327000	7749600	9577700	0	0	0	17327000	7749600	9577700	0	0	0	0	0	0	43055	1139	40539	262079	351401;351402	351401			2	
RALVFQPVAELK	1	Unmodified	1369.8082	0.80817048	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			61.344	59.825	2;3	0.00035663	50105	160511_QHF_FH_JSI10i_3	49.448	39.66			1.0063	0.97282	6.0138	4	0	Median	1.1664	0.97282	1.4842	2	0	Median	0.8038	0.93918	9.6907	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148050000	81408000	66645000	61107000	28544000	32563000	86946000	52864000	34082000	0	0	0	0	0	0	43056	897	40540	262080;262081;262082;262083	351403;351404;351405;351406;351407;351408	351403			6	
RALVILAK	1	Unmodified	882.60147	0.60147217	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	42.287	33.124	2;3	0.0051538	18288	160513_QHF_FH_JSI11Kac_6	51.854	7.4073			0.94927	0.9407	7.0874	7	0	Median	1.0865	0.93027	12.516	2	0	Median	0.81615	0.96983	9.8812	2	0	Median	0.97395	0.93244	5.008	2	0	Median	0.87176	0.9407	NaN	1	0	Median	643470000	339650000	303820000	251510000	113880000	137630000	318310000	187110000	131190000	48537000	24682000	23855000	25119000	13967000	11152000	43057	4276	40541	262084;262085;262086;262087;262088;262089;262090;262091	351409;351410;351411;351412;351413	351409			4	
RALWFSVSNDLKYDAERDLR	1	Unmodified	2453.2452	0.24515609	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	3				By MS/MS	16	0									1				1	59.531	49.645	6	0.055309	25968	160513_QHF_FH_JSI12Kac_6	18.784	1.8541			5.0792	5.3388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0792	5.3388	NaN	1	1	Median	106850000	176480	106670000	0	0	0	0	0	0	0	0	0	106850000	176480	106670000	43058	16	40542	262092	351414	351414			1	
RAMDLVQEEFLQR	0	Unmodified	1633.8246	0.82462518	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.008	62.504	3	5.922E-05	51297	160511_QHF_FH_JSI9i_3	75.736	58.525			0.5842	0.56202	3.9124	2	2	Median	0.70124	0.57779	NaN	1	1	Median	0.48669	0.54669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64775000	36066000	28708000	41923000	22143000	19780000	22851000	13923000	8928600	0	0	0	0	0	0	43059	4834	40543	262093;262094	351415;351416;351417	351417			3	
RAMELLK	1	Unmodified	859.49496	0.49495818	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			23.097	21.866	2	0.015945	17968	160511_QHF_FH_JSI10i_3	64.265	16.023			0.33858	0.39404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33858	0.39404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122130000	95072000	27062000	0	0	0	122130000	95072000	27062000	0	0	0	0	0	0	43060	5604	40544	262095;262096	351418;351419	351418			2	
RAMELLK	1	Oxidation (M)	875.48987	0.48987281	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				11.217	10.506	3	0.020818	7950	160511_QHF_FH_JSI9i_3	40.268	12.743			1.4491	1.1438	NaN	1	0	Median	1.4491	1.1438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166340000	88172000	78168000	166340000	88172000	78168000	0	0	0	0	0	0	0	0	0	43061	5604	40544	262097	351420;351421	351420		2708	2	
RANEFLEVGK	1	Unmodified	1161.6142	0.6142217	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							3	4	2		31.662	30.718	2;3	5.7445E-05	26513	160511_QHF_FH_JSI11i_3	80.763	71.575			1.0058	1.1295	38.293	8	1	Median	1.6176	1.3112	28.25	3	0	Median	1.102	1.2935	33.8	3	1	Median	0.70455	0.66029	7.4364	2	0	Median	NaN	NaN	NaN	0	0	Median	1656600000	818300000	838320000	332610000	130060000	202550000	538170000	271720000	266460000	785840000	416530000	369310000	0	0	0	43062	2502	40545	262098;262099;262100;262101;262102;262103;262104;262105;262106	351422;351423;351424;351425;351426;351427;351428;351429;351430;351431;351432;351433;351434	351423			12	
RANEMNISPASLASLYEEDFK	1	Unmodified	2384.1318	0.13182539	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							1	2	3		96.797	96.594	3	6.3608E-07	80348	160511_QHF_FH_JSI10i_3	81.016	73.119			1.2145	1.1834	16.885	5	0	Median	1.0685	0.9174	NaN	1	0	Median	1.1067	1.3194	15.385	2	0	Median	1.2192	1.1641	4.8117	2	0	Median	NaN	NaN	NaN	0	0	Median	85185000	42108000	43078000	20162000	11517000	8644800	37996000	17816000	20180000	27027000	12775000	14253000	0	0	0	43063	4819	40546	262107;262108;262109;262110;262111;262112	351435;351436;351437;351438;351439;351440;351441;351442;351443	351438			9	
RAPDQAAEIGSR	0	Unmodified	1269.6426	0.64256171	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.62	0.484		3	5							3	3	2		13.201	12.646	2;3	6.9249E-08	9999	160511_QHF_FH_JSI10i_3	138.45	105.07			0.91592	1.0254	25.936	7	2	Median	1.5561	1.3075	45.696	2	1	Median	0.9078	1.065	3.923	3	0	Plateau	1.111	1.0791	34.277	2	1	Median	NaN	NaN	NaN	0	0	Median	498660000	256050000	242610000	87867000	39211000	48656000	369040000	197370000	171670000	41751000	19467000	22284000	0	0	0	43064	2825	40547	262113;262114;262115;262116;262117;262118;262119;262120	351444;351445;351446;351447;351448;351449;351450;351451;351452;351453;351454	351447			11	
RAPEEELPPLDPEEIRK	1	Unmodified	2017.048	0.04801941	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		55.984	55.345	4	0.016633	49000	160511_QHF_FH_JSI11i_3	35.852	32.247			0.98715	1.0781	11.515	3	0	Median	0.98715	0.88315	NaN	1	0	Median	0.8863	1.0781	NaN	1	0	Median	1.136	1.0781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277730000	160410000	117320000	46632000	23979000	22653000	122490000	68568000	53926000	108610000	67865000	40742000	0	0	0	43065	3459	40548	262121;262122;262123	351455;351456;351457;351458	351456			4	
RAPFDLFENK	1	Unmodified	1235.6299	0.62987176	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.2		6	10					2	6	6	7	5	6	63.466	59.872	2;3	8.1411E-11	50210	160511_QHF_FH_JSI10i_3	151.22	111.17			0.92723	0.88214	23.9	22	1	Median	0.92024	0.81881	10.648	5	0	Linear	0.71666	0.88132	33.743	7	1	Median	0.85846	0.83337	25.138	4	0	Linear	0.84092	0.88231	18.857	6	0	Median	19678000000	9486000000	10191000000	6280100000	2881700000	3398400000	5502500000	2939700000	2562800000	6770100000	3084800000	3685300000	1124800000	579800000	545000000	43066	898	40549	262124;262125;262126;262127;262128;262129;262130;262131;262132;262133;262134;262135;262136;262137;262138;262139;262140;262141;262142;262143;262144;262145;262146;262147	351459;351460;351461;351462;351463;351464;351465;351466;351467;351468;351469;351470;351471;351472;351473;351474;351475;351476;351477;351478;351479;351480;351481;351482;351483;351484;351485;351486;351487;351488;351489;351490;351491;351492;351493;351494;351495;351496;351497;351498;351499;351500;351501;351502;351503;351504;351505;351506;351507;351508;351509;351510;351511;351512;351513;351514;351515;351516;351517;351518;351519;351520;351521;351522;351523;351524;351525;351526;351527;351528;351529	351476			71	
RAPFDLFENKK	2	Unmodified	1363.7248	0.72483478	898	P08238;Q58FF7	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			17							7	4	6		56.2	55.33	2;3;4	1.0532E-05	70607	160511_QHF_FH_JSI11i_3	109.16	82.452			0.69038	0.70103	39.314	14	5	Median	0.76435	0.6172	51.814	4	2	Median	0.50007	0.56614	32.559	4	2	Median	0.87525	0.82828	38.954	6	1	Median	NaN	NaN	NaN	0	0	Median	2369100000	1344800000	1024400000	353540000	206990000	146550000	555470000	346680000	208780000	1460100000	791070000	669030000	0	0	0	43067	898	40550	262148;262149;262150;262151;262152;262153;262154;262155;262156;262157;262158;262159;262160;262161;262162;262163;262164	351530;351531;351532;351533;351534;351535;351536;351537;351538;351539;351540;351541;351542;351543;351544;351545;351546;351547;351548;351549;351550;351551;351552;351553;351554;351555;351556;351557;351558;351559	351537			29	
RAPFDLFENR	0	Unmodified	1263.636	0.63601977	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				62.226	60.71	2;3	0.017459	49892	160511_QHF_FH_JSI9i_3	58.699	36.462			0.84831	0.67768	46.599	2	1	Median	0.84831	0.67768	46.599	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187770000	121670000	66101000	187770000	121670000	66101000	0	0	0	0	0	0	0	0	0	43068	880	40551	262165;262166	351560;351561	351560			1	
RAPGDQGEK	1	Unmodified	956.46756	0.46755746	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			0.054754	-0.28928	2	0.029534	19	160511_QHF_FH_JSI10i_2	53.968	36.728			0.14308	0.17448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14308	0.17448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8463700	7346800	1116900	0	0	0	8463700	7346800	1116900	0	0	0	0	0	0	43069	1554	40552	262167	351562	351562			1	
RAPQMDWSK	1	Unmodified	1117.5339	0.53386288	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.188	23.848	2	0.011967	19250	160511_QHF_FH_JSI9i_3	48.423	29.329			0.97671	0.80881	NaN	1	0	Median	0.97671	0.80881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45675000	22026000	23649000	45675000	22026000	23649000	0	0	0	0	0	0	0	0	0	43070	198	40553	262168	351563	351563			1	
RAQAEQAALR	0	Unmodified	1112.6051	0.60505399	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				7.6066	7.0538	2	0.013449	4928	160511_QHF_FH_JSI9i_3	44.203	28.541			1.1049	0.89684	NaN	1	0	Median	1.1049	0.89684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26370000	13410000	12959000	26370000	13410000	12959000	0	0	0	0	0	0	0	0	0	43071	2636	40554	262169	351564	351564			1	
RAQEDISR	0	Unmodified	973.49411	0.49410656	482;2988	O75150;Q5VTR2	RNF40;RNF20	E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A	no	no	0	0	0	1		By MS/MS			3	0			1								1			5.2565	4.7794	2	0.028558	2809	160511_QHF_FH_JSI10i_3	60.019	24.663			1.36	1.5603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.36	1.5603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74694000	28369000	46325000	0	0	0	74694000	28369000	46325000	0	0	0	0	0	0	43072	482;2988	40555	262170	351565	351565			1	
RAQEILSQLPIK	1	Unmodified	1394.8245	0.82454882	1446	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							3	1	1		59.554	58.437	2;3	0.00010921	47859	160511_QHF_FH_JSI9i_3	70.412	64.379			0.82161	0.73307	17.369	5	0	Median	0.7489	0.60921	9.3647	3	0	Plateau	0.8311	0.95677	NaN	1	0	Median	0.82161	0.76396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	257350000	134310000	123040000	137460000	71063000	66395000	51805000	24395000	27410000	68083000	38850000	29232000	0	0	0	43073	1446	40556	262171;262172;262173;262174;262175	351566;351567;351568;351569;351570;351571;351572;351573	351570			8	
RAQGGDGVLDATGEEANSNAENPK	1	Unmodified	2399.0949	0.094922616	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		29.7	28.658	3	2.5187E-08	24824	160511_QHF_FH_JSI9i_2	82.177	77.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14343000	0	14343000	14343000	0	14343000	0	0	0	0	0	0	0	0	0	43074	3087	40557	262176;262177;262178	351574;351575;351576	351576			3	
RAQGPDGGLTASTYSYLGGFDSSSNVLAGQLR	0	Unmodified	3244.5749	0.57488266	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			91.869	91.204	3	5.5752E-16	80239	160511_QHF_FH_JSI9i_2	83.022	76.862			1.3043	1.3218	24.297	2	2	Median	1.3166	1.1131	NaN	1	1	Median	1.292	1.5695	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17270000	3665500	13605000	10035000	1396400	8638600	7235100	2269100	4966000	0	0	0	0	0	0	43075	3167	40558	262179;262180	351577;351578	351578			2	
RAQQQLENGFK	1	Unmodified	1317.6789	0.67894722	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				16.568	15.455	3	0.023039	12267	160511_QHF_FH_JSI9i_3	21.23	0			1	0.8254	NaN	1	0	Median	1	0.8254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32759000	14900000	17860000	32759000	14900000	17860000	0	0	0	0	0	0	0	0	0	43076	2690	40559	262181	351579	351579			1	
RAQSELAAHQK	1	Unmodified	1237.6527	0.65273247	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		4.62	4.3			7						1	3	4	1		5.352	4.1313	2;3;4	6.7764E-08	2752	160511_QHF_FH_JSI9i_3	107.18	81.79			0.68044	1.1012	31.358	8	0	Linear	1.3065	1.0259	3.9487	3	0	Median	0.62403	0.71003	29.351	4	0	Median	0.6595	0.61615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3156800000	1354400000	1802500000	2352800000	950280000	1402600000	753430000	386870000	366570000	50553000	17216000	33337000	0	0	0	43077	1264	40560	262182;262183;262184;262185;262186;262187;262188;262189	351580;351581;351582;351583;351584;351585;351586;351587;351588	351583			9	
RAQTGSGGADPTTDVSGQS	0	Unmodified	1790.8031	0.80309769	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	14.537	14.083	2	1.6639E-07	11516	160511_QHF_FH_JSI11i_1	98.943	93.337			0.98344	0.92555	14.831	4	2	Median	1.0263	0.82531	NaN	1	1	Median	0.73373	0.86733	NaN	1	1	Median	1.1923	1.1497	NaN	1	0	Median	0.94235	0.98767	NaN	1	0	Median	75737000	36127000	39610000	19937000	7175800	12761000	15723000	6856700	8865900	19652000	9398900	10253000	20425000	12695000	7729900	43078	476	40561	262190;262191;262192;262193;262194	351589;351590;351591;351592;351593;351594;351595;351596	351589			8	
RAQTTNSNSSSSSDVSTHS	0	Unmodified	1951.8468	0.84675342	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			7	5.66			2					1		2	1			5.3346	1.8641	3	4.8177E-14	2846	160511_QHF_FH_JSI10i_3	114.96	113.09			1.1739	0.96667	24.501	3	1	Median	1.2502	1.0299	8.965	2	0	Median	0.60965	0.68357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46467000	22309000	24159000	23774000	11725000	12049000	22693000	10583000	12110000	0	0	0	0	0	0	43079	3266	40562	262195;262196;262197	351597;351598;351599;351600	351597			3	
RASAYEALEK	1	Unmodified	1136.5826	0.58258722	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		18.005	17.259	2	0.0021776	13780	160511_QHF_FH_JSI9i_3	61.65	22.628			1.0319	0.79635	16.003	3	1	Plateau	1.0739	0.88763	NaN	1	0	Median	0.64431	0.71447	NaN	1	0	Median	1.0319	0.97631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78172000	38208000	39964000	28392000	12113000	16278000	30456000	15333000	15122000	19325000	10762000	8562900	0	0	0	43080	2707	40563	262198;262199;262200	351601;351602;351603	351602			3	
RASDNLVK	1	Unmodified	901.49813	0.49812931	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			7.1248	6.6193	2	0.0077417	4567	160511_QHF_FH_JSI10i_3	58.981	28.796			0.99984	1.169	69.661	3	2	Median	0.97179	0.80898	93.817	2	2	Median	0.99984	1.169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	593140000	308230000	284910000	303230000	150380000	152850000	289920000	157860000	132060000	0	0	0	0	0	0	43081	5616	40564	262201;262202;262203	351604;351605;351606	351604			3	
RASGQAFELILSPR	0	Unmodified	1543.8471	0.84707518	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			70.522	62.409	3	0.00015513	33187	160513_QHF_FH_JSI9Kac_6	80.706	75.047			1.0105	1.0069	2.0097	2	0	Median	1.1609	0.99274	NaN	1	0	Median	0.87956	1.0214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83090000	43757000	39333000	21974000	10948000	11026000	61116000	32809000	28308000	0	0	0	0	0	0	43082	1105	40565	262204;262205	351607;351608;351609	351608			3	
RASSDLSIASSEEDK	1	Unmodified	1593.7482	0.74820857	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		22.134	22.134	2;3	9.2759E-05	18925	160511_QHF_FH_JSI9i_2	78.096	43.209			1.1509	1.0953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1509	1.0953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26674000	14333000	12341000	0	0	0	0	0	0	26674000	14333000	12341000	0	0	0	43083	4673	40566	262206;262207;262208	351610;351611;351612	351612			3	
RATDVMIAGK	1	Unmodified	1060.5699	0.56991404	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.52	4.57		6	12					1	2	7	5	7	2	19.554	17.695	2;3	1.5374E-07	15201	160511_QHF_FH_JSI10i_2	119.68	60.7			0.93587	0.89838	115.01	20	7	Median	1.5178	1.2484	68.586	7	2	Median	0.74367	0.84373	101.36	5	1	Median	0.93587	0.8917	173.79	6	3	Median	0.50703	0.51823	20.538	2	1	Median	6247000000	3289300000	2957700000	1586800000	780190000	806620000	1687400000	915950000	771410000	2512200000	1298400000	1213800000	460640000	294740000	165900000	43084	1234	40567	262209;262210;262211;262212;262213;262214;262215;262216;262217;262218;262219;262220;262221;262222;262223;262224;262225;262226;262227;262228;262229	351613;351614;351615;351616;351617;351618;351619;351620;351621;351622;351623;351624;351625;351626;351627;351628;351629;351630;351631;351632;351633;351634;351635;351636;351637	351632			25	
RATDVMIAGK	1	Oxidation (M)	1076.5648	0.56482866	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By matching	By MS/MS	9	6			3					3		3	1	1	1	16.952	11.788	3	0.0068626	9549	160511_QHF_FH_JSI9i_3	41.704	21.563			1.3442	1.2491	64.309	6	0	Median	3.0582	2.4735	69.061	3	0	Median	0.84756	0.99643	NaN	1	0	Median	1.0667	1.0555	NaN	1	0	Median	1.1152	1.2062	NaN	1	0	Median	409110000	203370000	205730000	212320000	82834000	129490000	190500000	117120000	73377000	2975800	1330900	1644900	3314400	2089500	1225000	43085	1234	40567	262230;262231;262232;262233;262234;262235	351638;351639;351640;351641;351642;351643	351641		866	6	
RATVLESEGTR	0	Unmodified	1217.6364	0.6364137	5357	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			11.873	11.111	2;3	0.00036649	8592	160511_QHF_FH_JSI9i_3	73.632	50.278			0.88082	0.73846	10.861	3	1	Median	0.96934	0.79359	14.19	2	1	Median	0.64883	0.73846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	235690000	126400000	109280000	194600000	100690000	93909000	41086000	25713000	15373000	0	0	0	0	0	0	43086	5357	40568	262236;262237;262238	351644;351645;351646	351645			3	
RATVVESSEK	1	Unmodified	1104.5775	0.57750184	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.31		6	7					4	4	6	6	6	3	6.5643	3.1297	2;3	5.859E-06	3642	160511_QHF_FH_JSI10i_3	121.9	89.578			0.97559	0.97405	27.836	21	3	Median	1.1418	0.95291	11.758	6	0	Median	0.83441	0.98438	9.4148	6	0	Median	0.98939	0.94668	29.902	6	2	Median	0.82062	0.88857	63.813	3	1	Median	12462000000	5868100000	6593400000	5728900000	2633100000	3095800000	4615500000	2227500000	2388000000	1876000000	919600000	956370000	241100000	87882000	153220000	43087	1976	40569	262239;262240;262241;262242;262243;262244;262245;262246;262247;262248;262249;262250;262251;262252;262253;262254;262255;262256;262257;262258;262259	351647;351648;351649;351650;351651;351652;351653;351654;351655;351656;351657;351658;351659;351660;351661;351662;351663;351664;351665;351666;351667;351668;351669;351670;351671;351672;351673	351651			27	
RATVVESSEKAYSEAHEISK	2	Acetyl (K)	2262.1128	0.11280451	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		52.645	43.481	3	3.1609E-07	23896	160513_QHF_FH_JSI10Kac_6	95.957	86.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22599000	19188000	3410500	0	0	0	7996300	4585800	3410500	14602000	14602000	0	0	0	0	43088	1976	40570	262260;262261	351674;351675	351675	1996		2	
RAVAGDASESALLK	1	Unmodified	1386.7467	0.74669243	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							3	4	3	2	29.959	29.218	2;3	2.6201E-05	25007	160511_QHF_FH_JSI11i_3	85.837	80.522			0.97958	1.1023	23.858	12	1	Median	1.4649	1.1639	10.383	3	0	Median	0.95927	1.118	4.4098	4	0	Median	0.98813	0.9253	33.579	3	1	Median	0.65993	0.69786	0.18049	2	0	Median	1618300000	779840000	838420000	211100000	91904000	119200000	586670000	279630000	307040000	647890000	305690000	342200000	172600000	102620000	69980000	43089	821	40571	262262;262263;262264;262265;262266;262267;262268;262269;262270;262271;262272;262273	351676;351677;351678;351679;351680;351681;351682;351683;351684;351685;351686;351687;351688;351689;351690;351691;351692;351693;351694;351695;351696	351679			21	
RAVDFQEAQSYADDNSLLFMETSAK	1	Unmodified	2835.3021	0.3021382	1174	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	84.915	84.857	3	3.6399E-13	75771	160511_QHF_FH_JSI11i_3	101.04	97.943			0.62114	0.59599	27.457	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84436	0.7842	38.811	2	1	Median	0.76379	0.77246	NaN	1	1	Median	118200000	67066000	51132000	0	0	0	0	0	0	89603000	44667000	44936000	28595000	22399000	6195700	43090	1174	40572	262274;262275;262276	351697;351698;351699	351697			3	
RAVDLIQK	1	Unmodified	941.56581	0.56581494	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							3	2			21.155	19.992	2;3	0.0032374	16193	160511_QHF_FH_JSI9i_3	81.296	36.849			0.67917	0.7971	92.945	5	3	Median	0.28793	0.23033	116.51	3	2	Plateau	1.0294	1.1881	56.447	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	860250000	505040000	355210000	508800000	298160000	210640000	351450000	206880000	144570000	0	0	0	0	0	0	43091	1488	40573	262277;262278;262279;262280;262281	351700;351701;351702;351703;351704;351705;351706;351707;351708	351706			9	
RAVDLIQKHK	2	Acetyl (K)	1248.7303	0.73025451	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			31.506	23.303	3	0.018352	13205	160513_QHF_FH_JSI10Kac_6	48.741	32.487			0.96196	1.153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96196	1.153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6963800	3335400	3628500	0	0	0	6963800	3335400	3628500	0	0	0	0	0	0	43092	1488	40574	262282	351709;351710	351709	1498		2	
RAVEFQEAQAYADDNSLLFMETSAK	1	Unmodified	2833.3229	0.32287364	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	84.923	84.66	3	6.2854E-17	75462	160511_QHF_FH_JSI11i_3	122.78	110.93			0.89994	0.89883	11.529	5	3	Median	0.89994	0.78453	NaN	1	0	Median	0.77414	0.9261	NaN	1	0	Median	0.99326	0.93129	5.0172	2	2	Median	0.70502	0.73638	NaN	1	1	Median	267970000	138250000	129720000	32066000	18080000	13987000	64608000	41023000	23585000	153480000	69302000	84181000	17808000	9845400	7963100	43093	1727	40575	262283;262284;262285;262286;262287	351711;351712;351713;351714;351715;351716	351712			6	
RAVEFQEAQAYADDNSLLFMETSAK	1	Oxidation (M)	2849.3178	0.31778826	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		75.947	75.947	3	0.0014431	67795	160511_QHF_FH_JSI11i_3	43.162	40.514			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43094	1727	40575	262288	351717	351717		1414	1	
RAVETTAQSDNK	1	Unmodified	1318.6477	0.64770667	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	5.76		3	3				1	2		1	3	4	1	5.3888	2.2278	2;3	6.4866E-08	2821	160511_QHF_FH_JSI10i_3	110.38	104.43			1.0139	1.0509	15.589	9	0	Median	1.2388	1.0509	NaN	1	0	Median	0.92919	1.0589	7.6739	3	0	Median	0.99816	0.9623	22.364	4	0	Median	1.1451	1.2846	NaN	1	0	Median	759160000	376300000	382850000	164270000	69441000	94824000	454340000	241280000	213060000	135580000	63448000	72136000	4964800	2133900	2830900	43095	1479	40576	262289;262290;262291;262292;262293;262294;262295;262296;262297	351718;351719;351720;351721;351722;351723;351724;351725;351726;351727	351722			9	
RAYDIAGSTK	1	Unmodified	1080.5564	0.55637247	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	12.321	11.922	2;3	4.1547E-05	9348	160511_QHF_FH_JSI9i_3	94.692	69.769			0.97497	0.82906	32.105	6	2	Median	0.97497	0.78943	6.9397	2	1	Median	0.71832	0.82898	NaN	1	0	Median	1.3151	1.2384	15.459	2	0	Median	0.52792	0.54653	NaN	1	1	Median	360010000	183420000	176580000	92958000	49124000	43834000	67272000	42688000	24584000	175610000	74134000	101470000	24173000	17479000	6694700	43096	999	40577	262298;262299;262300;262301;262302;262303	351728;351729;351730;351731;351732;351733;351734;351735	351732			8	
RAYQCVVLLQGK	1	Unmodified	1433.7813	0.7813038	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	50.304	41.251	2;3	0.00015513	22696	160513_QHF_FH_JSI10Kac_6	81.625	69.064			1.1161	1.1221	17.38	4	0	Median	1.2142	1.0368	NaN	1	0	Median	1.101	1.3126	22.107	2	0	Median	NaN	NaN	NaN	0	0	Median	1.026	1.1215	NaN	1	0	Median	57838000	30729000	27109000	11507000	5162600	6344100	41051000	22753000	18298000	0	0	0	5280100	2814000	2466100	43097	1818	40578	262304;262305;262306;262307	351736;351737;351738;351739;351740;351741;351742	351740			7	
RCEFVMEVTNK	1	Unmodified	1411.6588	0.6588054	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		6.25	5.63			3						1		1	3		37.799	37.799	2;3	0.00072591	33118	160511_QHF_FH_JSI11i_3	80.979	52.771			0.59946	0.55456	8.9311	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59946	0.55456	8.9311	2	2	Median	NaN	NaN	NaN	0	0	Median	108850000	59911000	48940000	0	0	0	0	0	0	108850000	59911000	48940000	0	0	0	43098	2772	40579	262308;262309;262310;262311	351743;351744;351745;351746	351745			4	
RCIHLEYPLLAEYDFR	0	Unmodified	2094.0357	0.035680585	1159	P19447	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.58	54.259	3	0.060617	29970	160513_QHF_FH_JSI10Kac_6	16.939	10.211			1.2611	1.53	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2611	1.53	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21133000	9248600	11885000	0	0	0	21133000	9248600	11885000	0	0	0	0	0	0	43099	1159	40580	262312	351747	351747			1	
RCQYVTEK	1	Unmodified	1082.5179	0.51787847	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.81	6.07		3	8					1	4	4	4	4	4	7.4977	5.2747	2;3	0.00017269	4560	160511_QHF_FH_JSI10i_3	124.23	91.39			0.84563	0.77297	16.552	15	1	Median	1.0195	0.74972	17.698	4	0	Linear	0.72285	0.85264	17.639	4	0	Median	0.73862	0.69825	12.161	4	0	Median	0.888	0.88746	16.073	3	1	Median	5630200000	2681200000	2949000000	2378100000	886550000	1491500000	1999100000	1105100000	894000000	1093600000	597670000	495900000	159430000	91877000	67551000	43100	803;944	40581	262313;262314;262315;262316;262317;262318;262319;262320;262321;262322;262323;262324;262325;262326;262327;262328	351748;351749;351750;351751;351752;351753;351754;351755;351756;351757;351758;351759;351760;351761;351762;351763;351764;351765;351766;351767;351768;351769;351770;351771;351772;351773;351774	351754			27	
RDAALAVAEAMADK	1	Unmodified	1430.7188	0.71876312	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							1	4	2		56.445	55.247	2;3	0.00060201	46119	160511_QHF_FH_JSI10i_3	68.283	61.153			1.2251	1.2168	43.792	6	3	Median	1.0928	0.91596	NaN	1	0	Median	1.4467	1.6833	47.244	4	3	Median	0.89917	0.83696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	443860000	198310000	245550000	73498000	32191000	41307000	291480000	118440000	173050000	78882000	47685000	31197000	0	0	0	43101	1578	40582	262329;262330;262331;262332;262333;262334;262335	351775;351776;351777;351778;351779;351780	351777			6	
RDAEDAMDAMDGAVLDGR	0	Unmodified	1906.8149	0.81492471	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	1	2	4	61.119	60.41	3	0.00010187	54901	160511_QHF_FH_JSI11i_1	60.602	56.998			1.1999	1.3806	19.751	6	1	Linear	1.2875	1.0923	NaN	1	0	Median	1.1991	1.4167	NaN	1	0	Median	1.2867	1.2776	15.929	2	0	Median	0.92084	0.99388	24.444	2	1	Median	372780000	170490000	202290000	51350000	19899000	31452000	73568000	37166000	36403000	154430000	68563000	85868000	93428000	44863000	48565000	43102	2165	40583	262336;262337;262338;262339;262340;262341;262342;262343	351781;351782;351783;351784;351785;351786;351787;351788;351789	351781			6	
RDAFTDSAISAK	1	Unmodified	1280.6361	0.63607935	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			6									3	3	25.807	25.788	2;3	0.0001569	22100	160511_QHF_FH_JSI11i_3	83.397	52.833			0.85659	0.79597	23.389	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82552	0.77502	3.772	2	1	Median	1.0073	1.055	25.409	3	3	Median	323550000	151070000	172480000	0	0	0	0	0	0	134660000	61960000	72697000	188890000	89110000	99781000	43103	4302	40584	262344;262345;262346;262347;262348;262349	351790;351791;351792;351793;351794;351795;351796;351797	351791			8	
RDAFVYAIK	1	Unmodified	1081.592	0.59202969	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		39.455	38.454	2	0.00027019	32213	160511_QHF_FH_JSI10i_3	83.948	39.501			1.1246	1.1306	32.493	3	2	Median	1.4217	1.1306	NaN	1	1	Median	1.1246	1.2926	NaN	1	0	Median	0.74229	0.69697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176480000	91180000	85297000	51742000	24490000	27253000	50516000	25820000	24696000	74219000	40870000	33349000	0	0	0	43104	4874	40585	262350;262351;262352	351798;351799;351800;351801;351802	351801			5	
RDALLLSFK	1	Unmodified	1061.6233	0.62332982	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			57.603	56.047	3	0.0019789	45857	160511_QHF_FH_JSI9i_3	52.579	29.259			0.88851	0.72945	NaN	1	0	Median	0.88851	0.72945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17668000	10097000	7571000	17668000	10097000	7571000	0	0	0	0	0	0	0	0	0	43105	2297	40586	262353;262354	351803;351804;351805	351804			3	
RDDIEDGDSMISSATSDTGSAK	1	Unmodified	2256.9652	0.96521358	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	45.849	45.197	3	0.00015922	41019	160511_QHF_FH_JSI12i_1	52.019	48.828			0.90737	0.96021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90737	0.96021	NaN	1	0	Median	45285000	26459000	18826000	0	0	0	0	0	0	0	0	0	45285000	26459000	18826000	43106	3318	40587	262355	351806	351806			1	
RDDMESLGYVLMYFNR	0	Unmodified	2007.9183	0.91826757	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.832	84.481	3	5.778E-17	49360	160513_QHF_FH_JSI10Kac_6	140.84	117.83			1.0936	1.0769	10.699	4	0	Median	1.2592	1.0776	NaN	1	0	Median	0.89313	1.0763	NaN	1	0	Median	1.3584	1.2805	NaN	1	0	Median	0.94974	0.99351	NaN	1	0	Median	674450000	344200000	330260000	119730000	58136000	61593000	267930000	146050000	121880000	162940000	71500000	91437000	123860000	68509000	55350000	43107	1633	40588	262356;262357;262358;262359	351807;351808;351809;351810;351811;351812	351812			6	
RDDNSAANNSANEK	1	Unmodified	1504.6502	0.65022586	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1									3	2	1	2.3745	2.1445	3	0.0036502	1320	160511_QHF_FH_JSI10i_1	51.771	47.302			1.3847	1.6465	73.473	5	2	Median	NaN	NaN	NaN	0	0	Median	1.9117	2.1642	59.729	3	2	Median	0.7208	0.69096	NaN	1	0	Median	1.3051	1.3317	NaN	1	0	Median	137180000	50952000	86227000	0	0	0	56187000	16283000	39904000	48988000	19443000	29545000	32004000	15226000	16779000	43108	2084	40589	262360;262361;262362;262363;262364;262365	351813;351814;351815;351816;351817;351818	351817			5	
RDEFEFLEK	1	Unmodified	1211.5823	0.58225287	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								2	2	1	52.247	51.69	2;3	0.00012352	44692	160511_QHF_FH_JSI11i_2	91.855	61.6			0.97125	1.0602	16.237	4	0	Median	NaN	NaN	NaN	0	0	Median	0.91063	1.1003	NaN	1	0	Median	0.93154	0.89858	18.144	2	0	Median	1.1169	1.1263	NaN	1	0	Median	275800000	126880000	148910000	0	0	0	14899000	8252800	6645900	97114000	46032000	51081000	163780000	72598000	91186000	43109	2525	40590	262366;262367;262368;262369;262370	351819;351820;351821;351822;351823	351819			4	
RDEHLLK	1	Unmodified	909.50321	0.50321468	147;158	O00505;O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	no	no	0	0	0	1			By MS/MS		3	0			1									1		7.6355	7.6355	2	0.027098	5319	160511_QHF_FH_JSI11i_3	57.177	26.992			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43110	147;158	40591	262371	351824	351824			1	
RDELTLEGIK	1	Unmodified	1172.6401	0.6401021	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.7	1	9	5				1	5		4	3	6	8	43.541	40.814	2;3	1.6435E-06	35135	160511_QHF_FH_JSI12i_2	112.15	72.102			1.0317	1.0259	17.291	19	6	Median	1.0455	0.87124	9.5048	4	2	Median	0.85082	1.1035	7.6621	3	0	Plateau	1.1601	1.1454	13.88	6	1	Median	0.9167	0.98497	21.149	6	3	Median	3571900000	1768800000	1803100000	509480000	236440000	273040000	753820000	372780000	381040000	1166300000	570480000	595860000	1142200000	589070000	553150000	43111	1481	40592	262372;262373;262374;262375;262376;262377;262378;262379;262380;262381;262382;262383;262384;262385;262386;262387;262388;262389;262390;262391;262392	351825;351826;351827;351828;351829;351830;351831;351832;351833;351834;351835;351836;351837;351838;351839;351840;351841;351842;351843;351844;351845;351846;351847;351848;351849;351850;351851;351852	351829			28	
RDFAPPGQQK	1	Unmodified	1142.5833	0.58325592	4469	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		13.663	13.001	2;3	1.6647E-06	10219	160511_QHF_FH_JSI10i_3	115.71	86.628			0.86894	0.94988	21.485	5	0	Median	1.1357	0.9211	4.5299	2	0	Median	0.8474	0.96104	1.6509	2	0	Median	0.6006	0.58509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	546770000	288700000	258070000	276440000	125150000	151290000	207520000	130350000	77169000	62817000	33203000	29614000	0	0	0	43112	4469	40593	262393;262394;262395;262396;262397	351853;351854;351855;351856;351857;351858;351859	351854			7	
RDFGSFDK	1	Unmodified	970.45084	0.45084476	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		21.254	20.429	3	0.0047881	17133	160511_QHF_FH_JSI11i_3	42.336	26.133			1.0396	0.98686	45.1	3	2	Plateau	0.54957	0.44154	NaN	1	1	Median	0.80516	0.94014	NaN	1	1	Median	1.0396	0.98686	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	175010000	84142000	90865000	30984000	19911000	11073000	63697000	30354000	33342000	80326000	33877000	46450000	0	0	0	43113	807	40594	262398;262399;262400	351860;351861;351862	351860			3	
RDFGSFDKFK	2	Acetyl (K)	1287.6248	0.62478638	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	1	0	0	2				By MS/MS	16	0									1				1	61.707	51.814	3	0.054247	27136	160513_QHF_FH_JSI12Kac_6	38.58	29.092			0.68416	0.74902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68416	0.74902	NaN	1	0	Median	5370700	1772400	3598300	0	0	0	0	0	0	0	0	0	5370700	1772400	3598300	43114	807	40595	262401	351863	351863	443		1	
RDFNQFIK	1	Unmodified	1066.556	0.55597854	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		35.113	34.152	2;3	0.001098	28556	160511_QHF_FH_JSI10i_3	94.302	49.855			1.1127	0.9693	26.028	6	0	Median	1.0215	0.82739	21.84	2	0	Median	1.0296	1.1894	28.388	2	0	Median	1.1965	1.1274	23.856	2	0	Median	NaN	NaN	NaN	0	0	Median	903890000	472060000	431830000	373480000	200990000	172500000	218030000	108760000	109270000	312380000	162310000	150070000	0	0	0	43115	403	40596	262402;262403;262404;262405;262406;262407	351864;351865;351866;351867;351868;351869	351865			5	
RDFVEAPPPK	1	Unmodified	1154.6084	0.60840804	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.615	50.942	3	0.044636	45968	160511_QHF_FH_JSI11i_1	16.632	6.9445			1.1006	1.1945	20.085	4	0	Median	1.6113	1.296	NaN	1	0	Median	0.93619	1.1249	NaN	1	0	Median	1.2939	1.2683	NaN	1	0	Median	0.79913	0.83777	NaN	1	0	Median	218900000	92652000	126250000	19617000	6572600	13044000	67255000	28899000	38356000	91035000	36474000	54561000	40998000	20706000	20291000	43116	3132	40597	262408;262409;262410;262411	351870	351870			1	
RDHALLEEQSK	1	Unmodified	1324.6735	0.67352749	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			12.435	11.673	2;3	6.1195E-05	9280	160511_QHF_FH_JSI10i_3	75.618	67.894			0.4258	0.35393	8.8943	3	2	Median	0.43167	0.35998	2.3989	2	2	Median	0.26962	0.30946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194350000	142540000	51809000	121830000	86145000	35682000	72523000	56396000	16127000	0	0	0	0	0	0	43117	361	40598	262412;262413;262414	351871;351872;351873	351871			3	
RDIDNLVQR	0	Unmodified	1127.6047	0.60471964	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			24.868	23.57	2;3	0.00071034	19394	160511_QHF_FH_JSI10i_3	53.751	36.52			1.2277	1.2059	3.3035	4	1	Median	1.4108	1.1726	0.022468	2	0	Median	1.0707	1.2417	0.19223	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	200470000	89829000	110640000	66242000	27136000	39106000	134230000	62693000	71537000	0	0	0	0	0	0	43118	1648	40599	262415;262416;262417;262418	351874;351875;351876;351877	351874			4	
RDIMSIYK	1	Unmodified	1024.5376	0.53755128	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		36.528	35.552	2;3	0.0053191	30880	160511_QHF_FH_JSI11i_3	66.27	47.488			1.0122	0.94703	19.266	6	0	Median	1.0777	0.87996	9.9985	2	0	Median	1.0946	1.2672	15.481	2	0	Median	1.0103	0.93894	1.603	2	0	Median	NaN	NaN	NaN	0	0	Median	419780000	186810000	232970000	130320000	55959000	74365000	143700000	66684000	77017000	145760000	64167000	81588000	0	0	0	43119	4775	40600	262419;262420;262421;262422;262423;262424	351878;351879;351880;351881	351878			3	
RDIQENDEEAVQVK	1	Unmodified	1671.8064	0.80639216	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							4	4	6	6	23.185	22.597	2;3	2.0933E-30	18740	160511_QHF_FH_JSI11i_2	160.27	147.91			1.0135	1.0794	18.306	19	1	Median	1.0436	0.74839	36.032	4	1	Linear	1.0261	1.2215	14.891	4	0	Median	1.1166	1.0822	13.145	5	0	Median	0.95133	1.0267	6.941	6	0	Median	1166400000	570230000	596220000	197620000	85614000	112000000	278160000	146430000	131730000	369620000	173290000	196340000	321040000	164900000	156140000	43120	109	40601	262425;262426;262427;262428;262429;262430;262431;262432;262433;262434;262435;262436;262437;262438;262439;262440;262441;262442;262443;262444	351882;351883;351884;351885;351886;351887;351888;351889;351890;351891;351892;351893;351894;351895;351896;351897;351898;351899;351900;351901;351902;351903;351904;351905;351906;351907;351908;351909	351903			28	
RDLALVNDQLLGFVR	0	Unmodified	1727.9683	0.96825295	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			89.235	88.14	3	0.0091891	73635	160511_QHF_FH_JSI10i_3	39.143	28.804			1.2112	1.4128	19.637	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2112	1.4128	19.637	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19847000	10416000	9430900	0	0	0	19847000	10416000	9430900	0	0	0	0	0	0	43121	2789	40602	262445;262446	351910;351911	351910			1	
RDLGEELEALK	1	Unmodified	1271.6721	0.67213051	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	1				By MS/MS	3	0			1										1	53.894	53.656	2	0.012396	45922	160511_QHF_FH_JSI12i_3	61.65	24.459			0.56494	0.58555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56494	0.58555	NaN	1	1	Median	24729000	15878000	8850800	0	0	0	0	0	0	0	0	0	24729000	15878000	8850800	43122	1436;1445	40603	262447	351912	351912			1	
RDLLLTPK	1	Unmodified	954.58622	0.58621603	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	30.976	30.264	2;3	0.0009002	26158	160511_QHF_FH_JSI11i_3	65.305	0			1.1299	1.086	17.117	8	0	Median	1.4288	1.1685	8.1006	2	0	Median	1.2275	1.4526	0.26312	2	0	Median	1.024	0.95256	0.97037	2	0	Median	1.0401	1.0472	2.8859	2	0	Median	634550000	318350000	316200000	160360000	86430000	73934000	188050000	81717000	106330000	166790000	77890000	88899000	119350000	72316000	47037000	43123	2332	40604	262448;262449;262450;262451;262452;262453;262454;262455	351913;351914;351915;351916;351917;351918;351919;351920;351921	351914			9	
RDMGFTEEEFK	1	Unmodified	1387.6078	0.60781569	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	40.486	40.416	2;3	0.00026776	35573	160511_QHF_FH_JSI11i_3	94.616	71.876			1.2468	1.283	10.829	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2377	1.1771	15.314	2	1	Median	1.1191	1.178	NaN	1	0	Median	155250000	69598000	85651000	0	0	0	0	0	0	106540000	45309000	61235000	48705000	24289000	24415000	43124	777	40605	262456;262457;262458;262459;262460	351922;351923;351924;351925;351926;351927	351924			6	
RDMNEVETQFK	1	Unmodified	1395.6453	0.64526383	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	28.021	27.999	2	0.0039638	23491	160511_QHF_FH_JSI12i_3	62.466	39.726			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43125	5142	40606	262461;262462	351928;351929	351929			2	
RDMPPAFIK	1	Unmodified	1073.5692	0.56918576	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							3	1	1		37.901	36.427	2;3	0.00042563	30240	160511_QHF_FH_JSI10i_3	99.802	74.065			1.2084	1.1869	49.967	2	2	Median	1.0207	0.83365	NaN	1	1	Median	1.4306	1.69	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48788000	21931000	26857000	22259000	12483000	9775900	26530000	9448400	17081000	0	0	0	0	0	0	43126	1139	40607	262463;262464;262465;262466;262467	351930;351931;351932;351933;351934;351935	351931			6	
RDMPPAFIK	1	Oxidation (M)	1089.5641	0.56410038	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			27.096	25.764	3	0.0053023	21369	160511_QHF_FH_JSI10i_3	43.308	32.095			1.335	1.2905	18.734	2	0	Median	1.3804	1.1304	NaN	1	0	Median	1.291	1.4732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66997000	26729000	40268000	31403000	13221000	18181000	35594000	13508000	22086000	0	0	0	0	0	0	43127	1139	40607	262468;262469	351936;351937;351938;351939	351936		774	4	
RDMTIPR	0	Unmodified	887.46472	0.46472069	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		14.06	13.451	3	0.057036	10740	160511_QHF_FH_JSI10i_3	15.439	0.66357			2.5511	2.0594	94.692	3	0	Plateau	2.5511	2.0594	NaN	1	0	Median	1.6412	1.8807	NaN	1	0	Median	0.41153	0.38243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1685000000	620390000	1064600000	785330000	212790000	572540000	513180000	138700000	374480000	386450000	268900000	117550000	0	0	0	43128	11	40608	262470;262471;262472	351940	351940			1	
RDNNELLLFILK	1	Unmodified	1486.8508	0.85076357	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	97.321	97.239	3	4.4966E-05	83832	160511_QHF_FH_JSI12i_3	81.431	68.451			0.85362	0.88464	40.116	3	1	Median	NaN	NaN	NaN	0	0	Median	0.42438	0.51419	NaN	1	1	Median	1.215	1.1252	NaN	1	0	Median	0.85362	0.88464	NaN	1	0	Median	44567000	25733000	18834000	0	0	0	5454400	3696500	1757900	14765000	6175000	8590000	24348000	15861000	8486500	43129	1674	40609	262473;262474;262475;262476	351941;351942;351943;351944	351944			4	
RDNSDFDLLTVSETANEPPQDEGNSFNSPR	0	Unmodified	3350.4923	0.49233482	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	1	1		1									1	1	75.518	74.963	3	3.0467E-05	66908	160511_QHF_FH_JSI11i_3	45.983	43.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5933100	5933100	0	0	0	0	0	0	0	0	0	0	5933100	5933100	0	43130	282	40610	262477;262478	351945;351946	351945			2	
RDNTNEIYSGK	1	Unmodified	1295.6106	0.61059288	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	10.605	10.605	2	0.00015397	8194	160511_QHF_FH_JSI11i_3	83.397	68.723			1.5184	1.4551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5184	1.4551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42310000	15942000	26368000	0	0	0	0	0	0	42310000	15942000	26368000	0	0	0	43131	841	40611	262479;262480	351947;351948;351949	351947			3	
RDNYVPEVSALDQEIIEVDPDTK	1	Unmodified	2644.2868	0.28680571	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	90.285	90.007	3	1.9419E-06	79769	160511_QHF_FH_JSI11i_3	66.853	59.141			0.20433	0.23395	65.058	2	1	Median	NaN	NaN	NaN	0	0	Median	0.1176	0.14768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.35504	0.3706	NaN	1	1	Median	142860000	120750000	22113000	0	0	0	105100000	89861000	15240000	0	0	0	37764000	30891000	6873000	43132	914	40612	262481;262482;262483;262484	351950;351951;351952;351953	351950			4	
RDPALNSGVSQKPDPAK	2	Unmodified	1778.9275	0.92751034	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		18.73	17.847	3;4	8.9152E-05	14588	160511_QHF_FH_JSI10i_3	69.148	60.806			1.0713	0.92267	11.101	4	1	Median	1.0713	0.87349	0.70138	2	0	Median	0.83839	0.96981	NaN	1	0	Median	1.2151	1.1033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	336260000	158120000	178140000	232770000	107200000	125570000	70415000	38842000	31573000	33075000	12081000	20994000	0	0	0	43133	999	40613	262485;262486;262487;262488	351954;351955;351956;351957;351958;351959	351955			6	
RDPATLK	1	Unmodified	799.4552	0.45520186	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			7.4695	6.9487	2	0.039708	4804	160511_QHF_FH_JSI10i_3	47.849	9.0569			0.99111	1.125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99111	1.125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163170000	91987000	71186000	0	0	0	163170000	91987000	71186000	0	0	0	0	0	0	43134	193	40614	262489	351960	351960			1	
RDPEEDGMMK	1	Unmodified	1206.5009	0.50090778	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	13.539	13.037	2	0.027252	10178	160511_QHF_FH_JSI11i_2	52.278	30.75			1.0824	1.1746	19.683	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2677	1.35	NaN	1	1	Median	0.92409	1.022	NaN	1	1	Median	59523000	28703000	30819000	0	0	0	0	0	0	38831000	16768000	22063000	20692000	11935000	8756800	43135	3521	40615	262490;262491	351961;351962	351962			2	
RDPEFVFYDQLK	1	Unmodified	1555.7671	0.76709352	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	66.891	66.693	2;3	0.002144	57645	160511_QHF_FH_JSI12i_3	57.492	33.641			1.1934	1.204	14.539	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5961	1.4893	NaN	1	1	Median	1.1665	1.1652	4.6253	2	0	Median	187350000	82100000	105250000	0	0	0	0	0	0	77413000	27589000	49824000	109930000	54511000	55423000	43136	3951	40616	262492;262493;262494	351963;351964;351965;351966	351966			4	
RDPGNTEPVK	1	Unmodified	1111.5622	0.56218613	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	6.751	6.5562	2;3	0.00024274	4029	160511_QHF_FH_JSI12i_3	73.985	49.83			0.81554	0.83415	21.098	10	3	Median	0.97301	0.84977	NaN	1	0	Median	0.77563	0.96199	3.8047	2	0	Median	0.56734	0.52635	32.721	4	3	Linear	0.82565	0.82349	1.1558	3	0	Plateau	922620000	512650000	409970000	48741000	23723000	25018000	148350000	83233000	65115000	507420000	283130000	224280000	218120000	122560000	95553000	43137	2795	40617	262495;262496;262497;262498;262499;262500;262501;262502;262503;262504	351967;351968;351969;351970;351971;351972;351973;351974;351975;351976;351977;351978	351976			12	
RDPGVITYDLPTPPGEK	1	Unmodified	1853.9523	0.95232811	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.66	3	8	6					6		3	5	9	6	63.682	60.392	2;3	1.2343E-06	53401	160511_QHF_FH_JSI11i_3	101.67	94.077			0.84508	0.91606	20.533	19	1	Median	1.0512	0.914	3.8544	3	0	Plateau	0.79637	0.94859	25.781	5	0	Median	0.91783	0.87334	23.071	6	1	Median	0.86549	0.88985	21.835	5	0	Median	2773500000	1414800000	1358700000	393880000	181050000	212830000	596700000	324400000	272300000	1200300000	603950000	596370000	582630000	305440000	277200000	43138	1283	40618	262505;262506;262507;262508;262509;262510;262511;262512;262513;262514;262515;262516;262517;262518;262519;262520;262521;262522;262523;262524;262525;262526;262527	351979;351980;351981;351982;351983;351984;351985;351986;351987;351988;351989;351990;351991;351992;351993;351994;351995;351996;351997;351998;351999;352000;352001;352002;352003;352004;352005;352006;352007;352008;352009;352010;352011;352012;352013;352014;352015;352016;352017;352018	351980			40	
RDPNLFPFEK	1	Unmodified	1261.6455	0.64552182	4913	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	57.474	56.644	2;3	0.00032094	48403	160511_QHF_FH_JSI12i_3	78.342	49.943			0.75868	0.77828	28.248	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86922	0.99115	32.522	2	0	Median	0.81909	0.76914	NaN	1	0	Median	0.6407	0.64322	NaN	1	0	Median	175200000	84914000	90283000	0	0	0	54577000	26751000	27826000	58350000	25389000	32960000	62270000	32774000	29497000	43139	4913	40619	262528;262529;262530;262531	352019;352020;352021;352022;352023	352022			5	
RDPSSVPNADNAFTLFYVK	1	Unmodified	2140.0589	0.058918448	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.926	83.926	3	0.025184	74933	160511_QHF_FH_JSI11i_3	29.136	15.906			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43140	4135	40620	262532	352024	352024			1	
RDPVALEDVYPIHMILENK	1	Unmodified	2251.1671	0.16708869	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	1			By MS/MS		3	0			3									3		92.28	92.28	3	1.4989E-05	82268	160511_QHF_FH_JSI11i_3	78.088	54.759			2.1776	2.0196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1776	2.0196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28727000	8133900	20594000	0	0	0	0	0	0	28727000	8133900	20594000	0	0	0	43141	2305	40621	262533;262534;262535	352025;352026;352027	352026			3	
RDPVSTR	0	Unmodified	829.44061	0.44061443	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.1859	4.6865	2	0.045646	2632	160511_QHF_FH_JSI9i_3	44.961	28.807			1.2862	1.0364	NaN	1	0	Median	1.2862	1.0364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91963000	44629000	47333000	91963000	44629000	47333000	0	0	0	0	0	0	0	0	0	43142	2997	40622	262536	352028	352028			1	
RDQALTEEHAR	0	Unmodified	1324.6484	0.64837537	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				6.8267	6.384	3	0.0014736	4320	160511_QHF_FH_JSI9i_2	46.88	37.192			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43143	1021	40623	262537	352029	352029			1	
RDQNYPGAIAIHHPNVAEK	1	Unmodified	2129.0766	0.076634197	59	CON__P15636			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	4.11	3.64			32						3	26	7	1	1	40.266	38.113	3;4;5	3.5391E-11	29604	160511_QHF_FH_JSI9i_3	135.04	125.79		+	0.56024	0.46109	38.522	34	14	Median	0.54014	0.44073	14.746	26	13	Median	0.94698	1.107	12.3	6	1	Median	0.80122	0.73275	NaN	1	0	Median	0.97017	1.014	NaN	1	0	Median	3468700000	2166300000	1302400000	2898800000	1876600000	1022200000	522070000	265000000	257070000	40785000	21049000	19736000	7077200	3704700	3372500	43144	59	40624	262538;262539;262540;262541;262542;262543;262544;262545;262546;262547;262548;262549;262550;262551;262552;262553;262554;262555;262556;262557;262558;262559;262560;262561;262562;262563;262564;262565;262566;262567;262568;262569;262570;262571;262572	352030;352031;352032;352033;352034;352035;352036;352037;352038;352039;352040;352041;352042;352043;352044;352045;352046;352047;352048;352049;352050;352051;352052;352053;352054;352055;352056;352057;352058;352059;352060;352061;352062;352063;352064;352065;352066;352067;352068;352069;352070;352071;352072;352073;352074;352075;352076;352077;352078;352079;352080;352081;352082;352083;352084	352040			53	
RDSVLTSK	1	Unmodified	904.49779	0.49779495	587	O75937	DNAJC8	DnaJ homolog subfamily C member 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		7.7444	7.3766	2	0.0040463	5262	160511_QHF_FH_JSI10i_3	70.1	36.362			0.95717	0.86865	8.6343	3	0	Median	1.068	0.86865	NaN	1	0	Median	0.6436	0.75175	NaN	1	0	Median	0.95717	0.877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	740750000	373740000	367010000	361000000	168340000	192660000	228130000	115200000	112940000	151620000	90203000	61419000	0	0	0	43145	587	40625	262573;262574;262575	352085;352086;352087;352088;352089;352090	352088			6	
RDTALETALNAK	1	Unmodified	1301.6939	0.69392858	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.742	32.742	3	0.015442	28435	160511_QHF_FH_JSI11i_3	40.066	23.929			0.42876	0.41068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42876	0.41068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30016000	20770000	9245600	0	0	0	0	0	0	30016000	20770000	9245600	0	0	0	43146	1737	40626	262576	352091	352091			1	
RDTLALLQK	1	Unmodified	1056.6291	0.62914348	4744	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							1	2	2	1	38.099	37.331	2;3	5.3647E-06	30549	160511_QHF_FH_JSI9i_3	116.3	34.757			1.0053	0.93789	39.819	6	1	Median	1.2376	0.98877	NaN	1	0	Median	1.1524	1.3674	69.05	2	1	Median	0.93861	0.88297	29.268	2	0	Median	0.88011	0.88963	NaN	1	0	Median	624770000	349340000	275430000	149490000	73195000	76294000	205710000	103420000	102290000	240990000	154710000	86283000	28573000	18015000	10558000	43147	4744	40627	262577;262578;262579;262580;262581;262582	352092;352093;352094;352095;352096	352096			5	
RDTNAPESFK	1	Unmodified	1163.5571	0.55710075	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		28.3	28.3	3	0.045794	24383	160511_QHF_FH_JSI11i_3	26.118	9.092			0.45122	0.42547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45122	0.42547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106010000	66009000	40003000	0	0	0	0	0	0	106010000	66009000	40003000	0	0	0	43148	2691	40628	262583	352097	352097			1	
RDVDFELIK	1	Unmodified	1133.6081	0.60807369	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	50.599	50.188	2;3	5.1788E-05	44225	160511_QHF_FH_JSI11i_3	98.048	48.008			1.0594	1.093	11.696	6	1	Median	1.4808	1.2975	NaN	1	0	Median	1.0222	1.2713	NaN	1	1	Median	1.0955	1.0275	8.1191	2	0	Median	1.0441	1.0579	5.24	2	0	Median	610840000	260620000	350230000	36875000	18859000	18016000	27814000	13083000	14731000	239380000	91173000	148210000	306770000	137500000	169270000	43149	1630	40629	262584;262585;262586;262587;262588;262589	352098;352099;352100;352101;352102;352103	352098			6	
RDVPGFAIGGLSGGESK	1	Unmodified	1645.8424	0.84238373	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		55.875	54.837	3	0.00050208	45063	160511_QHF_FH_JSI9i_3	60.564	55.85			0.83449	0.81198	66.395	3	1	Plateau	0.8462	0.6739	NaN	1	0	Median	0.83449	0.96609	NaN	1	0	Median	0.28059	0.26674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213950000	128650000	85297000	52637000	23231000	29406000	52947000	25993000	26954000	108370000	79428000	28938000	0	0	0	43150	4522	40630	262590;262591;262592	352104;352105;352106;352107;352108;352109	352109			6	
RDVQEIFR	0	Unmodified	1061.5618	0.56179219	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	29.317	28.646	2;3	0.011556	25278	160511_QHF_FH_JSI10i_2	39.547	23.344			4.5593	4.1365	7.3318	3	3	Median	4.9491	4.1365	NaN	1	1	Median	3.2684	3.984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.5593	4.5897	NaN	1	1	Median	483030000	75502000	407530000	223730000	35411000	188310000	138390000	23492000	114900000	0	0	0	120920000	16599000	104320000	43151	2474;97	40631	262593;262594;262595	352110;352111;352112	352111			3	
RDVTQLDPNK	1	Unmodified	1184.6149	0.61494998	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	2	2	1	16.749	16.137	2;3	0.0001215	13216	160511_QHF_FH_JSI11i_3	63.408	37.291			1.0506	1.0245	15.751	7	0	Median	1.2426	1.0417	13.053	2	0	Median	1.0077	1.2325	16.393	2	0	Median	1.0285	1.007	2.445	2	0	Median	0.79866	0.84085	NaN	1	0	Median	255430000	126430000	129000000	77807000	39539000	38268000	70239000	32685000	37554000	94003000	47680000	46322000	13380000	6527000	6853100	43152	5442	40632	262596;262597;262598;262599;262600;262601;262602	352113;352114;352115;352116;352117;352118	352113			5	
RDWTAELGIR	0	Unmodified	1215.636	0.63601977	2761	Q16763	UBE2S	Ubiquitin-conjugating enzyme E2 S	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				55.806	54.24	3	0.004421	44463	160511_QHF_FH_JSI9i_3	37.968	21.436			0.93623	0.80194	NaN	1	1	Median	0.93623	0.80194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9052800	4725500	4327300	9052800	4725500	4327300	0	0	0	0	0	0	0	0	0	43153	2761	40633	262603;262604	352119;352120	352120			2	
RDWYVYAFLSSLPWVGK	1	Unmodified	2086.0676	0.06763264	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			97.35	91.629	2;3	9.8219E-96	53304	160513_QHF_FH_JSI10Kac_6	262.05	216.79			0.77707	0.9176	5.6401	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77707	0.9176	5.6401	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	852250000	446470000	405780000	0	0	0	852250000	446470000	405780000	0	0	0	0	0	0	43154	2284	40634	262605;262606	352121;352122;352123;352124	352123			4	
RDYDDMSPR	0	Unmodified	1153.4822	0.48222124	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	13.143	13.226	2	1.2314E-05	10554	160511_QHF_FH_JSI11i_3	109.29	92.05			0.95446	0.96915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95446	0.96915	NaN	1	1	Median	34198000	20001000	14197000	0	0	0	0	0	0	0	0	0	34198000	20001000	14197000	43155	1975	40635	262607;262608	352125;352126	352125			2	
RDYGVQLVEEGADTFTAK	1	Unmodified	1997.9694	0.96943474	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			72.912	71.463	3	0.021264	59924	160511_QHF_FH_JSI10i_3	32.627	22.569			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43156	5173	40636	262609	352127	352127			1	
REAALILGVSPTANK	1	Unmodified	1538.878	0.87804096	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		49.889	48.835	3	5.8533E-05	40985	160511_QHF_FH_JSI10i_3	84.195	78.291			0.86011	0.97077	21.119	3	0	Plateau	0.85412	0.70559	NaN	1	0	Median	0.91904	1.0518	NaN	1	0	Median	1.0213	0.97077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172620000	94721000	77902000	75507000	43260000	32247000	60107000	30813000	29294000	37009000	20648000	16361000	0	0	0	43157	4023	40637	262610;262611;262612	352128;352129	352128			2	
REAALPPVSPLK	1	Unmodified	1276.7503	0.75032125	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		43.559	42.773	3	0.0068222	35970	160511_QHF_FH_JSI10i_3	33.204	0			1.105	1.0771	20.56	4	1	Median	1.2386	1.0058	NaN	1	1	Median	0.98575	1.1534	NaN	1	0	Median	1.1954	1.1344	33.873	2	0	Median	NaN	NaN	NaN	0	0	Median	598200000	264640000	333560000	26525000	12490000	14036000	279720000	121050000	158670000	291950000	131090000	160860000	0	0	0	43158	2217	40638	262613;262614;262615;262616	352130;352131;352132;352133;352134;352135	352133			6	
READGSETPEPFAAEAK	1	Unmodified	1803.8275	0.82752153	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	32.424	31.676	2;3	2.4915E-05	26764	160511_QHF_FH_JSI11i_2	79.97	58.436			0.98129	0.99823	23.273	4	3	Median	1.1903	1.0763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.003	38.873	2	1	Median	0.809	0.9258	NaN	1	1	Median	242550000	124570000	117970000	47169000	24888000	22280000	0	0	0	147360000	72891000	74465000	48020000	26792000	21228000	43159	3213	40639	262617;262618;262619;262620;262621;262622	352136;352137;352138;352139;352140;352141;352142	352141			7	
REAETFK	1	Unmodified	879.44503	0.4450311	4294	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	6.2344	6.0934	2	0.017335	3834	160511_QHF_FH_JSI11i_3	62.107	28.592			1.0077	1.1091	17.303	6	0	Median	1.5291	1.2929	NaN	1	0	Median	0.96702	1.1916	NaN	1	0	Median	1.1267	1.0863	7.4822	2	0	Median	0.85811	0.9179	22.203	2	0	Median	673450000	302350000	371100000	67155000	22092000	45062000	71338000	31484000	39855000	295140000	114060000	181080000	239820000	134720000	105100000	43160	4294	40640	262623;262624;262625;262626;262627;262628	352143;352144;352145;352146;352147;352148	352144			6	
REAGNLTK	1	Unmodified	887.48248	0.48247924	377	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.0365	4.5371	2	0.010628	2524	160511_QHF_FH_JSI9i_3	60.59	14.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43161	377	40641	262629	352149	352149			1	
REALVQAHIYQLFLR	0	Unmodified	1856.0421	0.042086592	4665	Q9H254	SPTBN4	Spectrin beta chain, non-erythrocytic 4	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				87.584	78.965	4	0.049958	43677	160513_QHF_FH_JSI9Kac_6	7.9138	0			2.2644	1.9301	NaN	1	0	Median	2.2644	1.9301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91501000	21218000	70283000	91501000	21218000	70283000	0	0	0	0	0	0	0	0	0	43162	4665	40642	262630	352150	352150			1	
REAPVDVLTQIGR	0	Unmodified	1452.8049	0.80487601	4469	Q9BVC6	TMEM109	Transmembrane protein 109	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			58.876	57.558	3	0.00025195	48127	160511_QHF_FH_JSI10i_3	66.004	53.237			0.98292	0.96025	19.847	3	1	Plateau	0.99255	0.81691	NaN	1	0	Median	0.96012	1.1502	2.6691	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	290810000	138130000	152680000	139160000	67344000	71811000	151660000	70784000	80874000	0	0	0	0	0	0	43163	4469	40643	262631;262632;262633	352151;352152;352153;352154	352152			4	
REASICHMLK	1	Unmodified	1243.6165	0.61654666	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.644	14.644	2	0.020463	11910	160511_QHF_FH_JSI11i_3	56.729	22.343			0.57636	0.54638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57636	0.54638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24008000	16011000	7996800	0	0	0	0	0	0	24008000	16011000	7996800	0	0	0	43164	221	40644	262634	352155	352155			1	
REATADDLIK	1	Unmodified	1130.5932	0.5931519	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	22.218	21.646	2;3	0.00047177	17571	160511_QHF_FH_JSI12i_3	84.213	33.606			0.7526	0.79759	19.44	8	0	Median	0.76985	0.65862	NaN	1	0	Median	0.78565	0.96127	6.7864	2	0	Median	0.77834	0.78613	14.44	2	0	Median	0.59355	0.57849	23.619	3	0	Plateau	779340000	422720000	356620000	176510000	98190000	78325000	232520000	127700000	104810000	167380000	87023000	80361000	202920000	109800000	93123000	43165	2734	40645	262635;262636;262637;262638;262639;262640;262641;262642	352156;352157;352158;352159;352160;352161;352162;352163	352162			8	
REDGGYTFTATPEDFPK	1	Unmodified	1929.8745	0.87447172	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.962	57.029	3	0.00011557	48890	160511_QHF_FH_JSI12i_2	76.586	72.038			1.0549	1.128	11.308	4	2	Median	1.0894	0.92719	NaN	1	0	Median	0.88342	1.0824	NaN	1	0	Median	1.1973	1.1814	NaN	1	1	Median	1.0215	1.1755	NaN	1	1	Median	175100000	87019000	88082000	41029000	21792000	19237000	31603000	19015000	12588000	48244000	19217000	29027000	54226000	26995000	27231000	43166	5635	40646	262643;262644;262645;262646	352164;352165;352166;352167;352168	352164			5	
REDGGYTFTATPEDFPKK	2	Unmodified	2057.9694	0.96943474	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			48.675	47.715	3	0.0035977	42100	160511_QHF_FH_JSI10i_2	54.974	45.927			1.0114	1.2555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0114	1.2555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21848000	16139000	5709800	0	0	0	21848000	16139000	5709800	0	0	0	0	0	0	43167	5635	40647	262647	352169	352169			1	
REDIQQFFEEFQSK	1	Unmodified	1829.8584	0.85842773	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.803	83.803	3	3.2204E-07	74806	160511_QHF_FH_JSI11i_3	124.09	107.6			0.9344	0.85012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9344	0.85012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39406000	20598000	18808000	0	0	0	0	0	0	39406000	20598000	18808000	0	0	0	43168	3564	40648	262648	352170	352170			1	
REDLVEEIK	1	Unmodified	1129.5979	0.59790293	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0		5								1	1	2	1	32.8	31.874	2;3	0.023683	26880	160511_QHF_FH_JSI11i_2	46.406	13.566			0.93856	1.011	31.313	4	0	Median	1.3259	1.1162	NaN	1	0	Median	0.74392	0.91571	NaN	1	0	Median	1.1841	1.1802	NaN	1	0	Median	0.54986	0.59174	NaN	1	0	Median	153180000	82427000	70757000	23177000	12504000	10673000	46174000	24785000	21389000	52142000	26112000	26031000	31690000	19026000	12664000	43169	1012	40649	262649;262650;262651;262652;262653	352171;352172	352171			1	
REDLVVAPAGITLK	1	Unmodified	1480.8613	0.86132826	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.58	1	8	3					4		3	4	4	5	65.616	62.842	2;3	1.0598E-09	55586	160511_QHF_FH_JSI10i_2	148.96	111.61			1.0232	1.0456	21.882	15	1	Median	1.1924	1.0119	14.511	3	0	Plateau	0.87604	1.0618	16.313	4	1	Median	1.0179	1.0143	7.3327	4	0	Median	1.2619	1.3779	31.131	4	0	Median	1829700000	909200000	920460000	230350000	105450000	124900000	439100000	212210000	226890000	496020000	279750000	216270000	664190000	311790000	352400000	43170	1015	40650	262654;262655;262656;262657;262658;262659;262660;262661;262662;262663;262664;262665;262666;262667;262668;262669	352173;352174;352175;352176;352177;352178;352179;352180;352181;352182;352183;352184;352185;352186;352187;352188;352189;352190;352191;352192;352193;352194;352195;352196;352197;352198;352199	352196			27	
REDQSSHEVLQPLLSSSEGR	0	Unmodified	2253.0986	0.098551431	5623	Q9Y4D8	HECTD4	Probable E3 ubiquitin-protein ligase HECTD4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	102.25	102.14	2	0.041019	92745	160511_QHF_FH_JSI12i_1	33.685	16.96			1.1301	1.3205	6.7114	3	0	Plateau	1.4643	1.2188	NaN	1	0	Median	1.1011	1.3205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1301	1.1557	NaN	1	0	Median	681310000	298310000	383000000	213420000	96323000	117090000	293390000	116120000	177260000	0	0	0	174510000	85863000	88644000	43171	5623	40651	262670;262671;262672	352200	352200			1	
REEAAVDAQQQK	1	Unmodified	1371.6743	0.67425577	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1			By MS/MS		2	0		2										2		6.467	6.2715	2;3	0.0016334	4088	160511_QHF_FH_JSI11i_2	60.161	41.894			0.88709	0.89835	5.447	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88709	0.89835	5.447	2	2	Median	NaN	NaN	NaN	0	0	Median	54564000	22899000	31665000	0	0	0	0	0	0	54564000	22899000	31665000	0	0	0	43172	2636	40652	262673;262674	352201;352202	352202			2	
REEAIQNFK	1	Unmodified	1133.5829	0.58292157	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	16.84	16.514	2;3	0.0004655	14047	160511_QHF_FH_JSI10i_2	97.965	68.589			1.0386	0.90918	34.771	7	4	Median	1.1274	0.97614	10.049	2	2	Median	0.32521	0.39778	NaN	1	1	Median	1.0833	1.0189	2.2602	2	0	Median	0.72996	0.73945	13.476	2	1	Median	425040000	237390000	187650000	39008000	14778000	24230000	32743000	24817000	7926200	200100000	108450000	91654000	153190000	89352000	63839000	43173	203	40653	262675;262676;262677;262678;262679;262680;262681;262682	352203;352204;352205;352206;352207;352208;352209;352210;352211	352209			9	
REEEEFNTGPLSVLTQSVK	1	Unmodified	2162.0855	0.085527128	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.16		6	4						4	4	2	5	3	82.15	79.079	2;3	3.7038E-83	72965	160511_QHF_FH_JSI11i_3	199.15	186.66			0.94413	0.91591	11.754	12	2	Median	1.0066	0.87634	13.672	3	1	Median	0.84887	1.0326	4.9345	2	0	Median	1.0285	0.98602	5.6283	4	1	Median	0.84395	0.86989	0.70355	3	0	Plateau	2082000000	1071700000	1010300000	308530000	164900000	143630000	462520000	258680000	203840000	1046800000	493320000	553520000	264090000	154740000	109350000	43174	2002	40654	262683;262684;262685;262686;262687;262688;262689;262690;262691;262692;262693;262694;262695;262696	352212;352213;352214;352215;352216;352217;352218;352219;352220;352221;352222;352223;352224;352225;352226;352227;352228;352229;352230;352231;352232;352233;352234;352235;352236;352237;352238;352239;352240;352241;352242;352243;352244;352245;352246	352214			35	
REEETLDTIK	1	Unmodified	1232.6248	0.62484596	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	20.389	19.754	2	0.0020492	16651	160511_QHF_FH_JSI9i_2	71.349	38.509			1.0461	1.0737	33.85	5	2	Median	1.2451	1.0737	NaN	1	0	Median	1.0461	1.2594	NaN	1	0	Median	0.79847	0.78272	NaN	1	0	Median	1.2967	1.3819	47.942	2	2	Median	202140000	98389000	103750000	43242000	17756000	25486000	50716000	23084000	27632000	55297000	31325000	23973000	52886000	26225000	26661000	43175	5017;5423	40655	262697;262698;262699;262700;262701;262702	352247;352248;352249;352250;352251;352252;352253;352254	352248			8	
REELAPYPK	1	Unmodified	1101.5819	0.58185893	451	O60828	PQBP1	Polyglutamine-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	20.347	20.356	2;3	0.0026448	16508	160511_QHF_FH_JSI12i_3	43.282	36.679			0.96973	0.97311	19.002	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1904	1.1586	NaN	1	0	Median	0.87213	0.87823	14.509	2	1	Median	240310000	111700000	128610000	0	0	0	0	0	0	63017000	27548000	35468000	177290000	84156000	93137000	43176	451	40656	262703;262704;262705	352255;352256;352257;352258	352256			4	
REELFIVSK	1	Unmodified	1119.6288	0.62880913	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.26	5.44		8	7					1	3	5	5	4	5	44.697	42.01	2;3	7.9734E-07	35522	160511_QHF_FH_JSI12i_3	136.63	89.437			0.9787	1.0264	22.295	19	1	Median	1.374	1.1813	24.722	5	1	Median	0.9787	1.1335	16.609	5	0	Median	1.0893	1.0611	13.655	4	0	Linear	0.8962	0.96235	10.966	5	0	Median	5075400000	2516000000	2559400000	389590000	178150000	211440000	687520000	344230000	343290000	1663000000	795790000	867190000	2335300000	1197800000	1137500000	43177	1067	40657	262706;262707;262708;262709;262710;262711;262712;262713;262714;262715;262716;262717;262718;262719;262720;262721;262722;262723;262724	352259;352260;352261;352262;352263;352264;352265;352266;352267;352268;352269;352270;352271;352272;352273;352274;352275;352276;352277;352278;352279;352280;352281;352282;352283;352284;352285;352286;352287	352282			27	
REELSNVLAAMR	0	Unmodified	1387.7242	0.72418285	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			59.213	57.979	3	1.1418E-05	51040	160511_QHF_FH_JSI9i_2	81.92	68.519			0.9222	0.95402	6.7928	4	0	Median	1.1657	0.97316	8.2445	2	0	Median	0.79068	0.93943	7.6162	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	412860000	207400000	205460000	252210000	116570000	135640000	160650000	90822000	69827000	0	0	0	0	0	0	43178	5604	40658	262725;262726;262727;262728	352288;352289;352290;352291;352292;352293;352294;352295	352294			7	
REENTSNESTDVTKGDSK	2	Acetyl (K)	2037.9087	0.90868497	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						2	2				2	1	1	17.218	9.1446	3	3.7926E-05	6872	160513_QHF_FH_JSI10Kac_4	92.31	82.389			0.89609	0.99169	7.7126	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78771	0.92896	2.891	2	0	Median	1.0907	1.0372	NaN	1	0	Median	1.0016	1.0747	NaN	1	0	Median	32845000	15687000	17159000	0	0	0	13638000	6819700	6818500	1915900	690060	1225800	17291000	8177000	9114300	43179	2285	40659	262729;262730;262731;262732	352296;352297;352298;352299;352300;352301	352296	2384;2385		6	
REENTSNESTDVTKGDSKNAK	3	2 Acetyl (K)	2393.0943	0.094253914	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	2	0	0	3		By MS/MS		By MS/MS	13.5	0.5						2	2				2		2	24.783	16.802	3	6.7819E-07	10575	160513_QHF_FH_JSI12Kac_4	81.967	67.353			0.88242	1.0049	7.913	4	0	Median	NaN	NaN	NaN	0	0	Median	0.78467	0.93	5.1493	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96248	1.0554	1.1194	2	0	Median	49285000	25509000	23775000	0	0	0	15227000	7995900	7231000	0	0	0	34058000	17513000	16544000	43180	2285	40660	262733;262734;262735;262736	352302;352303;352304;352305;352306;352307;352308	352306	2384;2385;2386		7	
REENTSNESTDVTKGDSKNAKK	4	3 Acetyl (K)	2563.1998	0.19978162	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	3	0	0	4		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	1	2	30.24	21.488	3	1.8681E-10	13159	160513_QHF_FH_JSI12Kac_3	94.463	78.764			0.85718	1.0071	9.2561	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84746	1.0014	0.79667	2	0	Median	1.1698	1.1469	NaN	1	0	Median	0.88081	0.96015	11.316	2	0	Median	70229000	38042000	32187000	0	0	0	24190000	13088000	11102000	7793900	2961300	4832500	38245000	21992000	16253000	43181	2285	40661	262737;262738;262739;262740;262741	352309;352310;352311;352312;352313;352314;352315;352316;352317;352318;352319	352315	2384;2385;2386;2387		11	
REEQLFK	1	Unmodified	948.50288	0.50288033	1767;254	O15131;P52294	KPNA5;KPNA1	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	no	no	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	15.219	14.738	2	0.015981	11838	160511_QHF_FH_JSI11i_3	64.207	18.255			1.6058	0.92478	34.038	4	1	Linear	1.0686	0.87461	NaN	1	0	Median	0.87263	0.97782	NaN	1	0	Median	1.2815	1.1977	NaN	1	0	Median	0.52069	0.53739	NaN	1	1	Median	227400000	114100000	113300000	42877000	20398000	22478000	39432000	19777000	19655000	95191000	39463000	55728000	49900000	34456000	15443000	43182	254;1767	40662	262742;262743;262744;262745	352320;352321	352320			2	
REESPMDVDQPSPSAQDTQSIASDGTPQGEK	1	Unmodified	3286.4532	0.45317213	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.853	46.224	3	6.3936E-40	41528	160511_QHF_FH_JSI10i_1	157.2	151.3			0.92457	0.92205	13.682	5	2	Median	0.92457	0.75555	NaN	1	0	Median	0.74898	0.87765	13.319	2	2	Median	0.96207	0.92205	NaN	1	0	Median	1.0054	1.0543	NaN	1	0	Median	571760000	307650000	264100000	73913000	30608000	43305000	199970000	116880000	83090000	151530000	82310000	69222000	146340000	77857000	68487000	43183	3290	40663	262746;262747;262748;262749;262750	352322;352323;352324;352325;352326;352327;352328;352329;352330	352328			9	
REFGEEALNSLQK	1	Unmodified	1519.7631	0.76307078	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		45.513	44.84	2;3	0.01763	39253	160511_QHF_FH_JSI11i_3	42.743	24.432			1.3604	1.2614	32.201	3	1	Median	1.4611	1.2614	NaN	1	0	Median	1.3604	1.6784	NaN	1	1	Median	0.98486	0.88264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	177580000	79639000	97943000	58765000	25295000	33471000	70598000	32337000	38261000	48219000	22008000	26211000	0	0	0	43184	4494	40664	262751;262752;262753	352331;352332;352333	352331			3	
REFIQEPAK	1	Unmodified	1116.5928	0.59275797	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		20.54	19.938	3	0.0038347	16828	160511_QHF_FH_JSI11i_3	43.77	43.77			1.0926	1.1259	35.366	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2362	1.4458	NaN	1	1	Median	0.96566	0.87681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60487000	30898000	29590000	0	0	0	27407000	12329000	15078000	33080000	18569000	14512000	0	0	0	43185	197	40665	262754;262755	352334;352335	352334			2	
REFPTVPLVK	1	Unmodified	1184.6917	0.69174374	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	5	4	3	3	54.925	51.8	2;3	1.392E-05	43355	160511_QHF_FH_JSI10i_3	106.4	68.851			0.86966	0.8984	19.531	15	0	Median	1.0245	0.83967	19.443	5	0	Median	0.82111	0.95365	4.4001	4	0	Median	0.96268	0.89768	7.3186	3	0	Plateau	0.674	0.68782	41.204	3	0	Plateau	2559000000	1305600000	1253400000	871690000	418020000	453660000	715870000	392400000	323470000	798400000	400530000	397870000	173040000	94644000	78393000	43186	2772	40666	262756;262757;262758;262759;262760;262761;262762;262763;262764;262765;262766;262767;262768;262769;262770	352336;352337;352338;352339;352340;352341;352342;352343;352344;352345;352346;352347;352348;352349;352350;352351;352352	352341			17	
REGTGTEMPMIGDR	0	Unmodified	1548.7025	0.70246113	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.36	0.481		7	4							2	2	5	2	35.413	34.838	2;3	4.23E-05	30652	160511_QHF_FH_JSI10i_2	88.706	85.756			0.90333	0.94534	24.01	11	0	Median	0.88294	0.75088	2.9315	2	0	Median	0.82505	1.0228	1.1386	2	0	Median	0.97567	0.94717	10.325	5	0	Median	0.62448	0.67731	47.152	2	0	Median	1516000000	788040000	727960000	395400000	208100000	187310000	465310000	266530000	198780000	553700000	264090000	289600000	101590000	49319000	52268000	43187	2193	40667	262771;262772;262773;262774;262775;262776;262777;262778;262779;262780;262781	352353;352354;352355;352356;352357;352358;352359;352360;352361	352361			9	
REGTGTEMPMIGDR	0	Oxidation (M)	1564.6974	0.69737575	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	1	1		By MS/MS			2	0		1									1			27.818	26.897	3	0.022842	23555	160511_QHF_FH_JSI10i_2	33.842	25.928			0.97542	1.1955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97542	1.1955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34929000	20080000	14849000	0	0	0	34929000	20080000	14849000	0	0	0	0	0	0	43188	2193	40667	262782	352362	352362			1	
REHALTSGTIK	1	Unmodified	1211.6622	0.66223452	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		11.075	10.441	2;3	0.00093433	8058	160511_QHF_FH_JSI10i_3	65.179	54.254			1.2028	1.446	8.4939	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2028	1.446	8.4939	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180880000	90653000	90224000	0	0	0	180880000	90653000	90224000	0	0	0	0	0	0	43189	2658	40668	262783;262784;262785;262786	352363;352364;352365;352366	352364			4	
REHSLIK	1	Unmodified	881.5083	0.50830006	2326	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				6.7467	6.2238	3	0.053061	4141	160511_QHF_FH_JSI9i_3	24.894	14.48			1.0351	0.83963	NaN	1	1	Median	1.0351	0.83963	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65312000	36194000	29118000	65312000	36194000	29118000	0	0	0	0	0	0	0	0	0	43190	2326	40669	262787	352367	352367			1	
RELDNLR	0	Unmodified	914.49338	0.49337828	5831				yes	no	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			10.157	9.6488	3	0.0043418	7583	160511_QHF_FH_JSI10i_2	57.177	3.6232	+		0.79028	0.80917	3.685	2	0	Median	0.92651	0.78836	NaN	1	0	Median	0.67408	0.83053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	549810000	273750000	276060000	203230000	100260000	102980000	346570000	173490000	173080000	0	0	0	0	0	0	43191	5831	40670	262788;262789	352368	352368			1	
RELHGQNPVVTPCNK	1	Unmodified	1747.8788	0.87878601	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			17.759	16.641	3	0.0048881	13602	160511_QHF_FH_JSI10i_3	44.807	31.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43192	2746	40671	262790;262791;262792;262793	352369;352370;352371;352372	352369			4	
RELLAAKQK	2	Acetyl (K)	1097.6557	0.65569258	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			26.193	18.37	3	0.052069	10908	160513_QHF_FH_JSI10Kac_6	39.918	17.178			1.3037	1.5171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3037	1.5171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5605000	2196200	3408800	0	0	0	5605000	2196200	3408800	0	0	0	0	0	0	43193	3156	40672	262794	352373	352373	2783		1	
RELLELASR	0	Unmodified	1085.6193	0.61930707	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			37.984	36.51	2;3	0.021122	29754	160511_QHF_FH_JSI9i_3	42.19	24.951			1.1277	0.93282	20.44	3	0	Plateau	1.1277	0.93282	NaN	1	0	Median	0.93374	1.0748	26.49	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60763000	32229000	28534000	31839000	17263000	14576000	28924000	14967000	13958000	0	0	0	0	0	0	43194	2147	40673	262795;262796;262797	352374;352375;352376	352376			2	
RELLMGIFEMGWEK	1	Unmodified	1737.8582	0.85823349	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.303	83.582	3	0.00019252	47424	160513_QHF_FH_JSI10Kac_6	77.562	65.769			1.3843	1.6272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3843	1.6272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70641000	23107000	47533000	0	0	0	70641000	23107000	47533000	0	0	0	0	0	0	43195	1271	40674	262798	352377;352378	352378			2	
RELQELVQYPVEHPDK	1	Unmodified	1979.0112	0.011239973	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		49.172	48.669	3;4	0.00021999	42723	160511_QHF_FH_JSI11i_3	73.953	63.896			1.8104	1.6073	67.913	4	1	Median	2.2793	1.9321	NaN	1	0	Median	3.6445	4.4191	NaN	1	0	Median	1.1823	1.0957	28.156	2	1	Median	NaN	NaN	NaN	0	0	Median	477510000	164180000	313330000	91278000	17400000	73877000	141580000	39765000	101810000	244650000	107010000	137640000	0	0	0	43196	1846	40675	262799;262800;262801;262802	352379;352380;352381	352380			2	
RELQPSEEVTWK	1	Unmodified	1500.7573	0.75725712	526	O75438	NDUFB1	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		37.397	37.076	2;3	0.00014804	32547	160511_QHF_FH_JSI11i_3	80.469	61.64			0.46345	0.57473	28.689	3	2	Median	NaN	NaN	NaN	0	0	Median	0.46345	0.57473	NaN	1	1	Median	0.60966	0.56833	40.562	2	1	Median	NaN	NaN	NaN	0	0	Median	238850000	158310000	80540000	0	0	0	69381000	49822000	19558000	169470000	108490000	60981000	0	0	0	43197	526	40676	262803;262804;262805	352382;352383;352384	352383			3	
REMDQTMAANAQK	1	Unmodified	1492.6762	0.67624638	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	4	2	12.837	12.581	2;3	5.7343E-16	10299	160511_QHF_FH_JSI10i_2	167.44	130.33			0.96404	0.95779	62.616	10	2	Median	1.2666	1.0877	0.54379	2	1	Median	1.1155	1.3929	7.8024	2	0	Median	0.8461	0.825	99.729	4	1	Median	0.72851	0.74553	12.547	2	0	Median	1237400000	644300000	593120000	218560000	96917000	121640000	315720000	178340000	137390000	483120000	240560000	242560000	220020000	128490000	91533000	43198	1342	40677	262806;262807;262808;262809;262810;262811;262812;262813;262814;262815	352385;352386;352387;352388;352389;352390;352391;352392;352393;352394	352392			10	
REMDQTMAANAQK	1	Oxidation (M)	1508.6712	0.671161	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	1	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		7.5581	7.5581	3	0.0033055	5458	160511_QHF_FH_JSI10i_2	45.79	29.849			1.8308	1.6392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8308	1.6392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48018000	20232000	27786000	0	0	0	0	0	0	48018000	20232000	27786000	0	0	0	43199	1342	40677	262816;262817	352395;352396	352396		981;982	2	
REMDQTMAANAQK	1	2 Oxidation (M)	1524.6661	0.66607562	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	2	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		12.509	12.509	2;3	0.011028	10172	160511_QHF_FH_JSI9i_2	38.799	17.739			1.518	1.4063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.518	1.4063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14892000	6699400	8192900	0	0	0	0	0	0	14892000	6699400	8192900	0	0	0	43200	1342	40677	262818;262819	352397;352398	352398		981;982	2	
REMVSQYLYTSK	1	Unmodified	1503.7392	0.73916421	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			40.758	39.232	2;3	0.00027633	32025	160511_QHF_FH_JSI9i_3	65.043	61.202			1.2186	1.0534	23.657	3	1	Plateau	1.5162	1.2433	32.978	2	1	Median	1.1641	1.3322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109560000	51561000	57996000	75827000	32974000	42854000	33729000	18587000	15142000	0	0	0	0	0	0	43201	432	40678	262820;262821;262822	352399;352400;352401	352400			2	
RENFVAEIQK	1	Unmodified	1232.6513	0.65133548	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			32.676	31.295	3	0.042949	26059	160511_QHF_FH_JSI10i_3	27.149	3.4252			0.54493	0.60781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54493	0.60781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21070000	15032000	6037800	0	0	0	21070000	15032000	6037800	0	0	0	0	0	0	43202	1666	40679	262823	352402	352402			1	
RENPLLPEEEEQR	0	Unmodified	1637.8009	0.80091285	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.394	29.394	3	0.022696	25404	160511_QHF_FH_JSI11i_3	32.252	25.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43203	2084	40680	262824	352403	352403			1	
REPAEQPGDGER	0	Unmodified	1339.6117	0.61165551	2501;2670	Q15424;Q14151	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	no	no	0	0	0	1			By MS/MS		3	0			1									1		6.0004	6.0004	2	0.015677	3771	160511_QHF_FH_JSI11i_3	59.426	37.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43204	2670;2501	40681	262825	352404	352404			1	
REPAPNAPGDIAAAFPAER	0	Unmodified	1948.9755	0.97552317	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			57.365	55.824	3	0.029449	46776	160511_QHF_FH_JSI10i_3	38.453	33.905			0.77868	0.91563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77868	0.91563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25940000	13775000	12165000	0	0	0	25940000	13775000	12165000	0	0	0	0	0	0	43205	681	40682	262826	352405	352405			0	
REPAVGEPAEVTTTVLVR	0	Unmodified	1923.0425	0.042540102	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		57.267	56.823	3	3.4396E-05	50357	160511_QHF_FH_JSI11i_3	71.073	63.742			1.0067	1.0888	16.606	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77294	0.96819	NaN	1	0	Median	1.3111	1.2245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91253000	38765000	52488000	0	0	0	40581000	19398000	21183000	50672000	19367000	31305000	0	0	0	43206	834	40683	262827;262828	352406;352407	352406			2	
REPFLLSGGDDGALK	1	Unmodified	1573.81	0.81002097	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							2	3	2		57.1	56.09	2;3	2.4385E-05	46055	160511_QHF_FH_JSI9i_3	96.489	89.287			0.93764	0.92673	2.6454	7	1	Median	1.1599	0.93805	1.7179	2	0	Median	0.80067	0.93337	1.2285	3	1	Plateau	0.97756	0.91585	5.4611	2	0	Median	NaN	NaN	NaN	0	0	Median	1093600000	536810000	556780000	234070000	94718000	139350000	343050000	184080000	158980000	516480000	258020000	258460000	0	0	0	43207	4350	40684	262829;262830;262831;262832;262833;262834;262835	352408;352409;352410;352411;352412;352413;352414;352415;352416;352417;352418;352419;352420;352421;352422;352423	352418			16	
REPGYTPPGAGNQNPPGMYPVTGPK	1	Unmodified	2581.2384	0.23835615	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			51.914	50.63	3	8.5044E-10	42198	160511_QHF_FH_JSI10i_3	83.312	79.976			0.89226	0.90554	14.634	4	1	Median	1.1533	0.95351	18.941	2	0	Median	0.7281	0.884	15.047	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	248430000	123160000	125280000	109890000	47419000	62471000	138540000	75738000	62805000	0	0	0	0	0	0	43208	3927	40685	262836;262837;262838;262839	352424;352425;352426;352427;352428;352429;352430	352425			7	
REPGYTPPGAGNQNPPGMYPVTGPK	1	Oxidation (M)	2597.2333	0.23327077	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	1	1	By MS/MS				3	0			2							2				44.403	42.803	3	0.011196	34994	160511_QHF_FH_JSI9i_3	30.223	17.909			1.3655	1.1394	NaN	1	1	Median	1.3655	1.1394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13692000	5506500	8185800	13692000	5506500	8185800	0	0	0	0	0	0	0	0	0	43209	3927	40685	262840;262841	352431;352432	352432		2359	2	
REPSLSPK	1	Unmodified	912.50288	0.50288033	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4	3.69		2	7					1		5	2	2	1	10.92	10.507	2;3	0.001563	8031	160511_QHF_FH_JSI10i_3	62.558	39.818			0.93136	0.88264	12.934	9	0	Median	1.1173	0.89962	14.076	4	0	Median	0.80589	0.92685	1.7801	2	0	Median	0.89808	0.843	6.4978	2	0	Median	0.67804	0.6985	NaN	1	0	Median	8440900000	4145500000	4295400000	3060500000	1376700000	1683800000	2833500000	1545200000	1288400000	2345900000	1108200000	1237700000	200940000	115500000	85448000	43210	893	40686	262842;262843;262844;262845;262846;262847;262848;262849;262850;262851	352433;352434;352435;352436;352437;352438;352439;352440;352441;352442;352443;352444;352445;352446;352447;352448;352449;352450;352451	352440			19	
REPTVSSFYVK	1	Unmodified	1311.6823	0.68230126	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		39.678	38.672	2;3	0.0012926	33813	160511_QHF_FH_JSI11i_3	62.528	53.524			0.90918	0.82005	6.8555	6	1	Median	1.0119	0.83056	1.233	2	0	Median	0.64675	0.75593	6.5357	2	0	Median	0.90918	0.85111	5.8244	2	1	Median	NaN	NaN	NaN	0	0	Median	300280000	182060000	118220000	95986000	54612000	41375000	96735000	68843000	27891000	107560000	58608000	48950000	0	0	0	43211	4471	40687	262852;262853;262854;262855;262856;262857	352452;352453;352454;352455;352456	352454			4	
REPVSLEEWTK	1	Unmodified	1372.6987	0.69867961	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.046	47.046	2	0.00024528	41563	160511_QHF_FH_JSI11i_3	79.201	56.13			0.9848	0.91764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9848	0.91764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67278000	30490000	36788000	0	0	0	0	0	0	67278000	30490000	36788000	0	0	0	43212	3699	40688	262858	352457;352458	352458			2	
REQEVNILK	1	Unmodified	1127.6299	0.62987176	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	4	1	22.366	22.123	2;3	3.2267E-05	18630	160511_QHF_FH_JSI11i_3	101.65	55.488			0.9652	1.0042	12.702	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84118	1.0394	NaN	1	0	Median	0.9652	1.0016	6.697	3	1	Median	1.2217	1.2666	NaN	1	0	Median	614830000	304830000	310000000	0	0	0	81448000	41453000	39995000	483840000	235260000	248580000	49538000	28111000	21427000	43213	1436	40689	262859;262860;262861;262862;262863;262864	352459;352460;352461;352462;352463;352464	352460			6	
REQEVNILKK	2	Unmodified	1255.7248	0.72483478	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				18.567	17.406	3	0.02406	13966	160511_QHF_FH_JSI9i_3	46.844	29.902			2.558	2.0307	NaN	1	1	Median	2.558	2.0307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29994000	11221000	18773000	29994000	11221000	18773000	0	0	0	0	0	0	0	0	0	43214	1436	40690	262865	352465	352465			1	
REQSSTVNAK	1	Unmodified	1118.568	0.56799978	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			1.956	1.5653	3	0.0005526	922	160511_QHF_FH_JSI10i_2	49.189	42.53			0.82891	1.0106	94.719	3	2	Median	0.64164	0.56676	NaN	1	1	Median	1.5927	1.91	90.019	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50844000	25136000	25708000	16456000	9007100	7449300	34387000	16129000	18258000	0	0	0	0	0	0	43215	5014	40691	262866;262867;262868	352466;352467;352468	352468			3	
RESGAAEQVDNK	1	Unmodified	1302.6164	0.61640654	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.17	0.373		5	1							2	2	2		5.5725	5.2586	2;3	4.1806E-05	3247	160511_QHF_FH_JSI11i_3	102.4	67.132			1.0429	0.99927	19.312	6	0	Median	1.0531	0.91883	13.603	2	0	Median	0.78835	0.97789	39.29	2	0	Median	1.0617	1.0212	4.8096	2	0	Median	NaN	NaN	NaN	0	0	Median	363470000	187130000	176340000	91833000	45258000	46575000	141030000	81944000	59083000	130610000	59926000	70680000	0	0	0	43216	5222	40692	262869;262870;262871;262872;262873;262874	352469;352470;352471;352472;352473;352474	352469			6	
RESPEVLLTLDILK	1	Unmodified	1624.94	0.93997251	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	93.799	93.796	3	0.00010586	81173	160511_QHF_FH_JSI12i_3	73.156	49.315			1.0078	0.98297	17.598	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1768	1.1132	NaN	1	0	Median	0.86305	0.86796	NaN	1	0	Median	85785000	38430000	47355000	0	0	0	0	0	0	29318000	12252000	17066000	56468000	26179000	30289000	43217	2517	40693	262875;262876;262877	352475;352476;352477;352478;352479	352478			5	
RESPSPAPK	1	Unmodified	967.50869	0.50869399	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		1	3							1	1	1	1	4.9388	4.8107	2	0.00057335	2761	160511_QHF_FH_JSI10i_3	78.334	53.412			0.81598	0.92214	57.668	3	1	Median	NaN	NaN	NaN	0	0	Median	0.81598	0.92214	NaN	1	0	Median	1.0955	1.0572	NaN	1	1	Median	0.37281	0.36623	NaN	1	0	Median	215380000	120680000	94698000	0	0	0	107590000	57153000	50440000	62207000	28722000	33485000	45576000	34803000	10773000	43218	3463	40694	262878;262879;262880;262881	352480;352481;352482	352481			3	
RESQSVEEALK	1	Unmodified	1274.6466	0.64664404	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.898	2	1	3							1	1	2	2	16.908	16.538	2;3	2.1244E-05	13522	160511_QHF_FH_JSI11i_3	104.79	46.425			1.3762	1.224	36.239	5	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0118	1.224	NaN	1	0	Median	1.3762	1.2946	0.89654	2	1	Median	0.76047	0.79806	51.341	2	1	Median	205380000	102230000	103160000	31191000	18707000	12483000	20680000	10192000	10488000	105500000	45852000	59647000	48014000	27476000	20538000	43219	1693	40695	262882;262883;262884;262885;262886;262887	352483;352484;352485;352486	352483			4	
RESVELALK	1	Unmodified	1043.5975	0.597509	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	3	2	2	29.376	28.782	2;3	0.00015618	24740	160511_QHF_FH_JSI11i_3	68.893	48.023			0.89068	0.87537	12.89	8	0	Median	0.88994	0.77553	NaN	1	0	Median	0.85683	1.0139	16.141	3	0	Plateau	1.1099	1.035	3.3041	2	0	Median	0.86147	0.87537	2.7481	2	0	Median	792070000	356940000	435130000	28355000	16286000	12069000	113460000	59446000	54017000	415080000	172170000	242910000	235170000	109040000	126130000	43220	366	40696	262888;262889;262890;262891;262892;262893;262894;262895	352487;352488;352489;352490;352491;352492;352493;352494;352495;352496	352488			10	
RETAATFLK	1	Unmodified	1035.5713	0.57129425	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			23.765	22.477	2	0.010539	18402	160511_QHF_FH_JSI10i_3	50.04	14.745			0.95033	0.91363	11.765	2	1	Median	1.0091	0.8407	NaN	1	1	Median	0.89502	0.99288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55582000	30719000	24862000	35094000	17573000	17521000	20487000	13147000	7340900	0	0	0	0	0	0	43221	3686	40697	262896;262897	352497;352498	352497			2	
RETGVDLTK	1	Unmodified	1017.5455	0.54547343	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.28	1	7	6					4		3	5	6	4	14.052	11.683	2;3	0.002659	9834	160511_QHF_FH_JSI10i_3	49.35	28.48			1.1198	1.0915	32.345	18	0	Median	1.2043	1.0272	7.888	3	0	Median	1.3728	1.6701	17.901	5	0	Median	1.1206	1.1196	18.429	6	0	Median	0.6586	0.62019	15.204	4	0	Linear	4612000000	2018500000	2593500000	619790000	261090000	358700000	910280000	369660000	540620000	1973300000	799690000	1173600000	1108700000	588050000	520610000	43222	1480	40698	262898;262899;262900;262901;262902;262903;262904;262905;262906;262907;262908;262909;262910;262911;262912;262913;262914;262915	352499;352500;352501;352502;352503;352504;352505;352506;352507;352508;352509;352510;352511;352512;352513;352514;352515;352516;352517;352518;352519;352520;352521;352522;352523;352524;352525;352526	352505			28	
RETGVDLTKDNMALQR	1	Acetyl (K);Oxidation (M)	1903.9422	0.94217413	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	1	2	By MS/MS	By MS/MS	By matching	By MS/MS	14.8	0.4							1	4		1	1	1	2	48.385	38.062	3	0.00034629	19915	160513_QHF_FH_JSI12Kac_5	76.82	68.478			0.96301	1.0447	123.69	5	1	Median	20.077	16.023	NaN	1	1	Median	1.082	1.2815	NaN	1	0	Median	0.87852	0.8508	NaN	1	0	Median	0.92229	1.0126	4.4125	2	0	Median	24530000	10822000	13708000	2473800	63679	2410100	5664000	2694800	2969200	7113100	3632400	3480700	9279300	4430900	4848400	43223	1480	40699	262916;262917;262918;262919;262920	352527;352528;352529;352530;352531	352529	1473	1152	5	
RETGVDLTKDNMALQR	1	Acetyl (K)	1887.9473	0.94725951	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	58.923	48.188	3	0.00056369	24496	160513_QHF_FH_JSI10Kac_5	78.285	61.886			0.91787	1.0029	35.221	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2556	1.5152	NaN	1	0	Median	0.7881	0.75189	NaN	1	0	Median	0.91787	1.0029	NaN	1	0	Median	17235000	8777400	8457700	0	0	0	7362200	3448300	3913900	6815400	3967500	2847900	3057400	1361600	1695800	43224	1480	40699	262921;262922;262923;262924	352532;352533;352534;352535;352536	352536	1473		5	
RETLLEIQK	1	Unmodified	1128.6503	0.65027285	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.679	33.236	3	0.0024995	27113	160511_QHF_FH_JSI9i_3	50.108	23.435			0.85422	0.70466	NaN	1	0	Median	0.85422	0.70466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41445000	23904000	17541000	41445000	23904000	17541000	0	0	0	0	0	0	0	0	0	43225	4237	40700	262925	352537;352538	352538			2	
RETYTEDFIK	1	Unmodified	1300.6299	0.62993134	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.67	0.471		1	2								1	1	1	36.815	36.445	2	3.8258E-07	31738	160511_QHF_FH_JSI11i_3	113.22	84.821			0.85538	0.82888	93.886	3	1	Median	NaN	NaN	NaN	0	0	Median	3.2423	4.0299	NaN	1	1	Median	0.8151	0.76054	NaN	1	0	Median	0.85538	0.82888	NaN	1	0	Median	110290000	52042000	58246000	0	0	0	27891000	7911800	19979000	38209000	18166000	20042000	44189000	25964000	18225000	43226	2115	40701	262926;262927;262928	352539;352540;352541	352540			3	
REVDDLGPEVGDIK	1	Unmodified	1540.7733	0.77330111	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.576	4	8	1							2	4	3	4	45.743	44.877	2;3	0.00037591	38391	160511_QHF_FH_JSI12i_2	77.305	52.513			0.89502	1.0005	25.883	10	0	Median	0.86917	0.75109	1.5379	2	0	Median	0.8687	1.0575	31.506	4	0	Median	1.032	1.0508	0.84076	2	0	Median	0.87437	0.96344	6.8789	2	0	Median	1022000000	490620000	531390000	146120000	71300000	74815000	412210000	193200000	219010000	277910000	128290000	149630000	185770000	97829000	87945000	43227	300	40702	262929;262930;262931;262932;262933;262934;262935;262936;262937;262938;262939;262940;262941	352542;352543;352544;352545;352546;352547;352548;352549;352550;352551;352552;352553;352554;352555	352543			11	
REVENSEDPK	1	Unmodified	1201.5575	0.55749468	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	3.64		4	4				1			1	2	4	2	5.4152	4.3076	2;3	0.0008225	3009	160511_QHF_FH_JSI11i_3	61.363	40.324			0.93177	0.97028	28.5	8	1	Median	1.2564	1.0696	NaN	1	0	Median	1.0874	1.3246	14.315	2	1	Median	0.93154	0.8422	7.0879	3	0	Plateau	0.71293	0.73832	40.475	2	0	Median	1142200000	617930000	524290000	157780000	61104000	96677000	299670000	141190000	158490000	572510000	345230000	227270000	112260000	70406000	41858000	43228	1139	40703	262942;262943;262944;262945;262946;262947;262948;262949;262950	352556;352557;352558;352559;352560;352561;352562;352563;352564;352565	352559			10	
REVENSEDPKFR	1	Acetyl (K)	1546.7376	0.73758431	1139	P18206	VCL	Vinculin	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		28.392	18.867	3	0.0249	11968	160513_QHF_FH_JSI11Kac_5	50.897	39.951			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2039600	2039600	0	0	0	0	0	0	0	2039600	2039600	0	0	0	0	43229	1139	40704	262951	352566	352566	995		1	
REVTVELSSQGFWK	1	Unmodified	1664.8522	0.85222014	4963	Q9NRR4	DROSHA	Ribonuclease 3	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				60.562	59.59	3	0.055446	52459	160511_QHF_FH_JSI9i_2	18.833	7.7773			0.54806	0.4681	NaN	1	0	Median	0.54806	0.4681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151760000	106590000	45164000	151760000	106590000	45164000	0	0	0	0	0	0	0	0	0	43230	4963	40705	262952	352567	352567			1	
REYEIPSNLTPADVFFR	0	Unmodified	2053.0269	0.026890038	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			91.221	90.169	3	0.029986	75187	160511_QHF_FH_JSI10i_3	26.808	21.266			1.0235	1.1669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0235	1.1669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14127000	6333800	7792700	0	0	0	14127000	6333800	7792700	0	0	0	0	0	0	43231	3765	40706	262953	352568	352568			1	
REYYFAITMER	0	Unmodified	1477.7024	0.70238478	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			65.198	57.03	3	0.0094717	31382	160513_QHF_FH_JSI10Kac_6	30.998	25.919			1.0052	1.2276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0052	1.2276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27044000	13145000	13899000	0	0	0	27044000	13145000	13899000	0	0	0	0	0	0	43232	5223	40707	262954	352569	352569			1	
RFADAASLLLSLMTSR	0	Unmodified	1750.94	0.93998929	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.443	90.723	3	9.3792E-12	52572	160513_QHF_FH_JSI10Kac_6	130.01	101.43			0.63003	0.75495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63003	0.75495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141040000	91056000	49982000	0	0	0	141040000	91056000	49982000	0	0	0	0	0	0	43233	4487	40708	262955	352570	352570			1	
RFADEGTVVK	1	Unmodified	1120.5877	0.58767259	3564	Q8N806	UBR7	Putative E3 ubiquitin-protein ligase UBR7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		20.166	20.166	3	0.012533	16861	160511_QHF_FH_JSI11i_3	27.914	13.24			0.80424	0.7666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80424	0.7666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61266000	32083000	29183000	0	0	0	0	0	0	61266000	32083000	29183000	0	0	0	43234	3564	40709	262956;262957	352571;352572	352571			2	
RFAPDISSYVLSDDIK	1	Unmodified	1824.9258	0.92577901	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				59.813	58.279	4	0.034865	48035	160511_QHF_FH_JSI9i_3	26.148	7.3152			0.63837	0.53508	NaN	1	0	Median	0.63837	0.53508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15638000	9389300	6249200	15638000	9389300	6249200	0	0	0	0	0	0	0	0	0	43235	3935	40710	262958	352573	352573			0	
RFDAMPFTLR	0	Unmodified	1252.6387	0.63866231	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.33	0.471		2	1								2	1		67.816	66.858	3	0.0064437	59225	160511_QHF_FH_JSI10i_2	40.533	37.001			0.69426	0.80236	4.6854	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6781	0.81168	1.6335	2	0	Median	0.86427	0.8781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85277000	51257000	34020000	0	0	0	65935000	40604000	25331000	19342000	10652000	8689400	0	0	0	43236	5475	40711	262959;262960;262961	352574;352575;352576;352577;352578;352579	352579			6	
RFDDAVVQSDMK	1	Oxidation (M)	1425.6558	0.65582851	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.37		11	11				1	5	1	6	5	9	9	28.861	26.578	2;3	0.0001908	20292	160511_QHF_FH_JSI12i_3	86.114	29.71			1.0363	0.97321	49.01	25	1	Median	1.1058	0.94768	33.223	6	0	Median	0.97708	1.1765	16.343	3	0	Median	0.99598	0.96187	64.661	8	1	Median	0.9798	1.0269	51.012	8	0	Median	6569800000	3334600000	3235200000	919370000	412270000	507100000	878230000	444620000	433610000	2942800000	1521800000	1420900000	1829500000	955910000	873580000	43237	985	40712	262962;262963;262964;262965;262966;262967;262968;262969;262970;262971;262972;262973;262974;262975;262976;262977;262978;262979;262980;262981;262982;262983;262984;262985;262986;262987;262988;262989;262990	352580;352581;352582;352583;352584;352585;352586;352587;352588;352589;352590;352591;352592;352593;352594;352595;352596;352597;352598;352599;352600;352601;352602;352603;352604;352605;352606;352607;352608;352609;352610;352611;352612;352613;352614	352614		562	35	
RFDDAVVQSDMK	1	Unmodified	1409.6609	0.66091389	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.25	9	10	10				5	9	3	8	11	15	12	39.416	35.765	2;3	3.2238E-31	30893	160511_QHF_FH_JSI11i_3	186.46	155.04			0.96634	1.0037	41.452	37	5	Median	1.0613	0.89854	52.494	6	1	Median	0.97201	1.1359	16.032	10	1	Median	0.97415	0.9605	63.477	11	2	Median	0.94296	1.0127	18.3	10	1	Median	30067000000	15025000000	15042000000	3161000000	1509400000	1651700000	5118600000	2647900000	2470600000	13331000000	6618100000	6712900000	8455900000	4249200000	4206700000	43238	985	40712	262991;262992;262993;262994;262995;262996;262997;262998;262999;263000;263001;263002;263003;263004;263005;263006;263007;263008;263009;263010;263011;263012;263013;263014;263015;263016;263017;263018;263019;263020;263021;263022;263023;263024;263025;263026;263027;263028;263029;263030;263031;263032;263033;263034;263035;263036	352615;352616;352617;352618;352619;352620;352621;352622;352623;352624;352625;352626;352627;352628;352629;352630;352631;352632;352633;352634;352635;352636;352637;352638;352639;352640;352641;352642;352643;352644;352645;352646;352647;352648;352649;352650;352651;352652;352653;352654;352655;352656;352657;352658;352659;352660;352661;352662;352663;352664;352665;352666;352667;352668;352669;352670;352671;352672;352673;352674;352675;352676;352677;352678;352679;352680;352681;352682;352683;352684;352685;352686;352687;352688;352689;352690;352691;352692;352693;352694;352695;352696;352697;352698;352699;352700;352701;352702;352703;352704	352618			88	
RFDDAVVQSDMKHWPFMVVNDAGRPK	2	Acetyl (K)	3086.4855	0.48547949	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	1	0	0	3			By MS/MS	By matching	16	0									2			1	1	84.391	75.012	4	2.9299E-08	41427	160513_QHF_FH_JSI11Kac_6	81.765	70.242			0.46341	0.46826	72.542	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29112	0.28036	NaN	1	0	Median	0.73766	0.7821	NaN	1	0	Median	123730000	91119000	32608000	0	0	0	0	0	0	105480000	80848000	24633000	18247000	10271000	7975300	43239	985	40713	263037;263038	352705	352705	777		1	
RFDDKYTLK	2	Acetyl (K)	1226.6295	0.62953741	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		46.086	36.942	2	0.0039597	20184	160513_QHF_FH_JSI11Kac_6	112.13	62.089			1.8896	2.0252	193.72	2	1	Median	NaN	NaN	NaN	0	0	Median	6.596	7.9685	NaN	1	1	Median	0.54131	0.51471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37890000	15961000	21929000	0	0	0	20540000	3532300	17008000	17351000	12429000	4921500	0	0	0	43240	2596	40714	263039;263040	352706;352707	352706	2574		2	
RFDDPGLMLMGFK	1	Oxidation (M)	1541.7371	0.73705572	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5								3	3	2	77.231	76.727	3	0.00063877	66822	160511_QHF_FH_JSI11i_3	59.185	53.869			1.1112	1.1117	23.9	8	1	Median	NaN	NaN	NaN	0	0	Median	0.79787	0.99715	39.158	3	1	Median	1.1327	1.0279	19.954	3	0	Plateau	1.0843	1.1117	7.8173	2	0	Median	280310000	149860000	130450000	0	0	0	37408000	19634000	17774000	90951000	47163000	43788000	151950000	83067000	68888000	43241	1023	40715	263041;263042;263043;263044;263045;263046;263047;263048	352708;352709;352710;352711;352712	352708		618;619	5	
RFDDPGLMLMGFK	1	Unmodified	1525.7421	0.7421411	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	4.93		8	13						4	6	6	6	7	87.895	85.888	2;3	1.0537E-05	76144	160511_QHF_FH_JSI12i_3	124.42	103.65			1.0369	1.0723	25.409	21	2	Median	1.2457	1.0808	21.53	6	0	Median	0.95915	1.0863	31.163	5	1	Median	1.2016	1.1409	17.224	4	0	Median	0.69228	0.72543	22.488	6	1	Median	2322900000	1103800000	1219100000	274980000	117560000	157420000	433760000	223650000	210120000	645030000	293550000	351480000	969120000	469020000	500110000	43242	1023	40715	263049;263050;263051;263052;263053;263054;263055;263056;263057;263058;263059;263060;263061;263062;263063;263064;263065;263066;263067;263068;263069;263070;263071;263072;263073	352713;352714;352715;352716;352717;352718;352719;352720;352721;352722;352723;352724;352725;352726;352727;352728;352729;352730;352731;352732;352733;352734;352735;352736;352737;352738;352739;352740;352741;352742;352743;352744;352745;352746;352747;352748;352749;352750;352751;352752;352753;352754;352755;352756;352757;352758;352759;352760;352761;352762;352763;352764;352765;352766;352767;352768;352769;352770;352771;352772;352773;352774;352775	352770			63	
RFDDPGLMLMGFKPLVLLK	2	Unmodified	2189.2105	0.21047383	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	4	2	3	2	100.7	98.451	3;4	2.3907E-07	88655	160511_QHF_FH_JSI12i_3	100.28	91.186			1.1148	1.0656	33.921	11	2	Median	1.6379	1.3894	36.722	4	2	Median	0.80116	0.94773	7.8621	2	0	Median	1.4631	1.4045	32.181	3	0	Plateau	0.89319	0.92168	6.613	2	0	Median	977670000	499930000	477740000	119070000	53765000	65308000	179200000	101300000	77892000	272910000	127950000	144960000	406490000	216910000	189580000	43243	1023	40716	263074;263075;263076;263077;263078;263079;263080;263081;263082;263083;263084	352776;352777;352778;352779;352780;352781;352782;352783;352784;352785;352786	352783			11	
RFDEAALSIQK	1	Unmodified	1276.6776	0.67755023	4311	Q99747	NAPG	Gamma-soluble NSF attachment protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	43.249	43.171	2;3	0.00071556	36871	160511_QHF_FH_JSI12i_3	46.88	20.897			0.7152	0.71898	31.043	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.016	0.94117	37.999	2	2	Median	0.7152	0.71898	NaN	1	0	Median	80978000	48334000	32644000	0	0	0	0	0	0	44831000	22718000	22113000	36147000	25617000	10531000	43244	4311	40717	263085;263086;263087	352787;352788;352789	352789			3	
RFDEATQLR	0	Unmodified	1134.5782	0.57817054	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	4	3	1	23.543	22.843	2;3	7.9734E-07	18788	160511_QHF_FH_JSI10i_3	136.63	60.781			0.92729	0.97674	10.854	10	0	Median	1.3112	1.1103	11.014	2	0	Median	0.84863	0.98893	10.831	4	0	Median	0.96932	0.91321	4.5282	3	0	Median	0.85375	0.88543	NaN	1	0	Median	744570000	378120000	366450000	145670000	66311000	79356000	365020000	198830000	166180000	194110000	91093000	103020000	39780000	21885000	17895000	43245	1129	40718	263088;263089;263090;263091;263092;263093;263094;263095;263096;263097	352790;352791;352792;352793;352794;352795;352796;352797;352798;352799;352800;352801;352802;352803;352804	352793			15	
RFDEILEASDGIMVAR	0	Oxidation (M)	1836.904	0.90399771	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		2	3						2	2	2	1	2	72.574	69.514	3	9.3511E-06	62784	160511_QHF_FH_JSI11i_3	102.78	95.574			1.0402	0.98175	17.471	7	0	Median	1.1632	1.0008	2.7199	2	0	Median	0.63985	0.77632	0.93644	2	0	Median	1.1599	1.0995	NaN	1	0	Median	0.8775	0.92611	28.05	2	0	Median	321980000	161610000	160370000	47362000	20262000	27100000	67003000	37946000	29057000	125640000	57094000	68543000	81977000	46307000	35670000	43246	1055	40719	263098;263099;263100;263101;263102;263103;263104	352805;352806;352807;352808;352809;352810;352811	352806		682	5	
RFDEILEASDGIMVAR	0	Unmodified	1820.9091	0.90908309	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	3.98		23	16						4	10	15	10	8	81.267	79.844	2;3	1.3942E-52	71161	160511_QHF_FH_JSI11i_3	238.43	189.99			0.90631	0.92365	38.797	35	21	Median	1.1198	0.96519	58.443	8	5	Median	0.82521	0.99211	30.834	14	9	Median	0.92518	0.91029	36.728	7	4	Median	0.77441	0.84915	14.295	6	3	Median	6207600000	3126200000	3081400000	1213600000	579170000	634420000	1951500000	981980000	969500000	1748000000	859860000	888140000	1294600000	705230000	589330000	43247	1055	40719	263105;263106;263107;263108;263109;263110;263111;263112;263113;263114;263115;263116;263117;263118;263119;263120;263121;263122;263123;263124;263125;263126;263127;263128;263129;263130;263131;263132;263133;263134;263135;263136;263137;263138;263139;263140;263141;263142;263143;263144;263145;263146;263147	352812;352813;352814;352815;352816;352817;352818;352819;352820;352821;352822;352823;352824;352825;352826;352827;352828;352829;352830;352831;352832;352833;352834;352835;352836;352837;352838;352839;352840;352841;352842;352843;352844;352845;352846;352847;352848;352849;352850;352851;352852;352853;352854;352855;352856;352857;352858;352859;352860;352861;352862;352863;352864;352865;352866;352867;352868;352869;352870;352871;352872;352873;352874;352875;352876;352877;352878;352879;352880;352881;352882;352883	352813			71	
RFDGVQDPR	0	Unmodified	1088.5363	0.53630573	115	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							4	3	2		18.458	17.675	2;3	0.00082761	14336	160511_QHF_FH_JSI10i_3	52.579	39.623			1.0163	1.0203	21.48	9	1	Median	1.5332	1.286	25.28	4	0	Median	1.0163	1.1701	16.543	3	1	Plateau	0.9719	0.9219	0.79574	2	0	Median	NaN	NaN	NaN	0	0	Median	716280000	371570000	344710000	242310000	103660000	138660000	363250000	211440000	151820000	110710000	56474000	54241000	0	0	0	43248	115	40720	263148;263149;263150;263151;263152;263153;263154;263155;263156	352884;352885;352886;352887;352888;352889;352890;352891;352892;352893;352894	352886			11	
RFDTEEEFK	1	Unmodified	1199.5459	0.54586736	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				29.304	28.264	2	0.0039514	24347	160511_QHF_FH_JSI9i_2	58.37	41.594			1.2463	1.1179	NaN	1	0	Median	1.2463	1.1179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36238000	16373000	19865000	36238000	16373000	19865000	0	0	0	0	0	0	0	0	0	43249	1818	40721	263157	352895;352896	352895			2	
RFDTEEEFKK	2	Unmodified	1327.6408	0.64083038	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		24.293	23.529	3	7.7753E-05	19632	160511_QHF_FH_JSI11i_3	90.614	72.346			0.88785	0.93359	7.202	3	0	Median	1.1019	0.93359	NaN	1	0	Median	0.86024	0.96666	NaN	1	0	Median	0.88785	0.84168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	445400000	214030000	231360000	60980000	32611000	28369000	131530000	62488000	69047000	252880000	118930000	133950000	0	0	0	43250	1818	40722	263158;263159;263160	352897;352898;352899;352900	352897			4	
RFDTEEEFKK	2	Acetyl (K)	1369.6514	0.65139506	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	45.211	35.038	3	0.0033944	19807	160513_QHF_FH_JSI11Kac_5	71.555	65.114			0.80095	0.77694	29.487	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0826	1.2824	NaN	1	0	Median	0.80095	0.77231	NaN	1	0	Median	1.1597	1.2916	NaN	1	0	Median	14932000	7204100	7728400	0	0	0	4429300	2094200	2335200	6343400	3552400	2791000	4159700	1557500	2602200	43251	1818	40722	263161;263162;263163	352901;352902;352903	352901	1837		3	
RFDVGPILK	1	Unmodified	1043.6128	0.61276513	4030	Q96DP5	MTFMT	Methionyl-tRNA formyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			54.801	53.238	3	0.016132	44563	160511_QHF_FH_JSI10i_3	32.218	23.26			0.69443	0.68727	32.681	2	1	Median	0.63675	0.54547	NaN	1	1	Median	0.75733	0.86595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18717000	9329500	9387400	7206900	4035200	3171600	11510000	5294300	6215800	0	0	0	0	0	0	43252	4030	40723	263164;263165	352904;352905	352904			2	
RFDVLAPHLTK	1	Unmodified	1295.735	0.73500553	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		50.023	48.968	4	0.0033496	42747	160511_QHF_FH_JSI11i_3	42.809	35.921			0.94885	0.86284	15.15	3	1	Median	1.1348	0.95199	NaN	1	1	Median	0.61366	0.70711	NaN	1	0	Median	0.94885	0.86284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66152000	31760000	34392000	19054000	8734400	10319000	12182000	7252100	4930300	34916000	15774000	19142000	0	0	0	43253	3858	40724	263166;263167;263168	352906;352907;352908;352909	352907			4	
RFDVSGYPTLK	1	Unmodified	1281.6717	0.67173657	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							4	4	4	2	51.617	50.774	2;3	6.13E-18	44887	160511_QHF_FH_JSI11i_3	158.41	128.15			0.96101	0.96707	23.964	14	1	Median	1.172	0.95617	18.467	4	1	Median	1.0175	1.1765	32.679	4	0	Linear	1.3299	1.2728	29.249	4	0	Linear	0.96673	0.97218	10.058	2	0	Median	8758600000	4372500000	4386100000	1864700000	930500000	934230000	2140200000	1128900000	1011400000	2562200000	1240200000	1322000000	2191500000	1072900000	1118600000	43254	1034	40725	263169;263170;263171;263172;263173;263174;263175;263176;263177;263178;263179;263180;263181;263182	352910;352911;352912;352913;352914;352915;352916;352917;352918;352919;352920;352921;352922;352923;352924;352925;352926;352927;352928;352929;352930;352931;352932;352933;352934;352935;352936;352937;352938;352939;352940;352941;352942;352943;352944;352945	352915			36	
RFEELGVK	1	Unmodified	976.53418	0.53418046	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		9	8							4	4	5	4	27.268	26.619	2;3	0.0012825	22629	160511_QHF_FH_JSI11i_3	99.442	71.268			0.96996	0.96047	59.152	16	6	Median	0.81652	0.81032	39.268	3	2	Plateau	0.80977	0.99279	15.342	4	0	Median	1.1717	1.2012	22.853	5	0	Median	1.1604	1.2698	110.87	4	4	Median	6909100000	3312200000	3596900000	749110000	354970000	394130000	1600700000	767730000	832930000	2382100000	1019400000	1362600000	2177300000	1170100000	1007200000	43255	2221	40726	263183;263184;263185;263186;263187;263188;263189;263190;263191;263192;263193;263194;263195;263196;263197;263198;263199	352946;352947;352948;352949;352950;352951;352952;352953;352954;352955;352956;352957;352958;352959;352960;352961;352962;352963;352964;352965;352966;352967;352968;352969	352947			24	
RFEELTNLIR	0	Unmodified	1289.7092	0.70918471	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By matching		2.57	0.495		3	4							3	3	1		64.082	63.019	2;3	1.6012E-07	52629	160511_QHF_FH_JSI10i_3	100.88	48.3			1.0413	1.0101	11.815	5	1	Median	1.3127	1.0808	9.5715	2	1	Median	0.74013	0.89213	7.6101	2	0	Median	1.0413	1.0547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	384510000	197110000	187410000	203050000	97419000	105630000	162390000	88664000	73730000	19068000	11027000	8040900	0	0	0	43256	40	40727	263200;263201;263202;263203;263204;263205;263206	352970;352971;352972;352973;352974;352975;352976;352977;352978	352972			9	
RFEFQADAFAK	1	Unmodified	1328.6513	0.65133548	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		54.992	54.992	2	0.00023532	48736	160511_QHF_FH_JSI11i_3	79.659	57.573			1.0105	0.94442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0105	0.94442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49728000	22379000	27349000	0	0	0	0	0	0	49728000	22379000	27349000	0	0	0	43257	575	40728	263207	352979	352979			1	
RFEIACYK	1	Unmodified	1085.5328	0.53280025	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			4							1	1	2		34.369	33.653	2;3	0.003483	29195	160511_QHF_FH_JSI11i_3	78.334	53.412			0.79423	0.6897	55.879	4	0	Median	1.1486	0.93375	NaN	1	0	Median	1.3957	1.6092	NaN	1	0	Median	0.54241	0.50444	1.3963	2	0	Median	NaN	NaN	NaN	0	0	Median	184000000	98210000	85791000	26844000	13548000	13296000	32421000	10566000	21855000	124740000	74096000	50640000	0	0	0	43258	5569	40729	263208;263209;263210;263211	352980;352981	352980			2	
RFEKPLEEK	2	Acetyl (K)	1216.6452	0.64518747	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	1	1	3	2	41.898	32.348	3	0.00095465	17700	160513_QHF_FH_JSI11Kac_6	89.171	72.229			0.66881	0.71953	159.92	5	4	Median	NaN	NaN	NaN	0	0	Median	0.057478	0.066249	NaN	1	1	Median	0.21452	0.21375	239.33	2	2	Median	0.7425	0.80967	16.692	2	1	Median	98260000	71518000	26741000	0	0	0	14788000	13827000	961620	52534000	40052000	12482000	30938000	17640000	13298000	43259	3609	40730	263212;263213;263214;263215;263216;263217;263218	352982;352983;352984;352985;352986;352987;352988;352989	352982	2892		8	
RFELLSEPQSGDLTSVTLMK	1	Unmodified	2250.1566	0.15658358	4758	Q9H6Y2	WDR55	WD repeat-containing protein 55	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		87.959	87.959	3	0.00026891	78619	160511_QHF_FH_JSI11i_3	57.142	52.275			1.1904	1.0948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1904	1.0948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20776000	9551000	11225000	0	0	0	0	0	0	20776000	9551000	11225000	0	0	0	43260	4758	40731	263219	352990	352990			1	
RFELQDSGSSLLPK	1	Unmodified	1575.8257	0.82567103	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			3							1	1	1		61.325	60.314	3	7.6671E-05	53526	160511_QHF_FH_JSI11i_3	80.632	73.474			0.93021	0.98102	16.328	3	0	Plateau	1.1861	0.98102	NaN	1	0	Median	1.0337	1.2004	NaN	1	0	Median	0.93021	0.86885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103140000	46065000	57072000	28231000	8988500	19242000	28275000	14022000	14253000	46631000	23054000	23577000	0	0	0	43261	15	40732	263220;263221;263222	352991;352992;352993	352992			3	
RFENAPDSAK	1	Unmodified	1133.5465	0.54653606	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			10.191	9.6031	2	0.030187	7295	160511_QHF_FH_JSI10i_3	50.353	37.317			0.46979	0.52616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46979	0.52616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21663000	14585000	7078200	0	0	0	21663000	14585000	7078200	0	0	0	0	0	0	43262	3395	40733	263223	352994	352994			1	
RFEQKGFR	1	Acetyl (K)	1108.5778	0.57777661	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	1	0	0	2		By MS/MS			16	0									1		1			30.09	21.984	3	0.047951	12603	160513_QHF_FH_JSI10Kac_6	43.083	13.921			1.1902	1.4315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1902	1.4315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6731200	2956200	3775000	0	0	0	6731200	2956200	3775000	0	0	0	0	0	0	43263	1209;1079	40734	263224	352995	352995			0	
RFEQQLAQTDGTLSTLEFQR	0	Unmodified	2367.1819	0.18188713	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			70.153	68.678	3	1.7081E-10	57467	160511_QHF_FH_JSI10i_3	122.53	105.84			1.3408	1.2889	37.105	2	0	Median	2.0631	1.6756	NaN	1	0	Median	0.87131	0.99144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145380000	73615000	71761000	35915000	14537000	21378000	109460000	59078000	50384000	0	0	0	0	0	0	43264	4534	40735	263225;263226	352996;352997;352998;352999	352997			4	
RFFPYYVYNIIGGLDEEGK	1	Unmodified	2279.1263	0.12626973	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			91.943	85.177	2;3	2.56E-70	49082	160513_QHF_FH_JSI10Kac_6	258.81	228.75			0.93239	0.99742	18.625	3	1	Plateau	0.90014	0.78269	NaN	1	0	Median	0.9045	1.0611	8.7462	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	936600000	549140000	387460000	272050000	127130000	144910000	664550000	422010000	242540000	0	0	0	0	0	0	43265	1177	40736	263227;263228;263229	353000;353001;353002;353003;353004	353003			5	
RFGDVSVK	1	Unmodified	906.49232	0.49231565	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		20.237	18.999	2	0.025287	15843	160511_QHF_FH_JSI11i_3	50.607	23.082			6.1507	5.1202	NaN	1	0	Median	6.1507	5.1202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13260000	1960000	11300000	13260000	1960000	11300000	0	0	0	0	0	0	0	0	0	43266	4254	40737	263230;263231	353005;353006	353005			2	
RFGEYNSNMSPEEK	1	Unmodified	1686.7308	0.73078437	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.151	27.771	3	0.0041309	22634	160511_QHF_FH_JSI9i_3	45.33	38.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43267	2081	40738	263232	353007	353007			1	
RFGFPEGSVELYAEK	1	Unmodified	1727.8519	0.85188578	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	3.36		5	9						1	5	5	2	3	68.401	67.528	2;3	1.3205E-09	55593	160511_QHF_FH_JSI9i_3	155.98	122.09			0.88916	0.86137	20.786	14	3	Median	0.92071	0.76966	17.146	5	1	Median	0.73181	0.84551	18.913	5	2	Median	0.99154	0.93148	1.715	2	0	Median	0.71268	0.70587	43.447	2	0	Median	5176600000	2732700000	2443900000	1526500000	727450000	799010000	1653400000	1009600000	643840000	1854800000	914130000	940690000	141880000	81479000	60404000	43268	1227	40739	263233;263234;263235;263236;263237;263238;263239;263240;263241;263242;263243;263244;263245;263246;263247	353008;353009;353010;353011;353012;353013;353014;353015;353016;353017;353018;353019;353020;353021;353022;353023;353024;353025;353026;353027;353028;353029;353030;353031;353032;353033;353034;353035;353036;353037;353038;353039;353040;353041	353022			34	
RFGMDFK	1	Unmodified	899.43236	0.43235793	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.273	34.833	3	0.05052	28994	160511_QHF_FH_JSI10i_3	25.894	16.981			0.71806	0.85291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71806	0.85291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19054000	9435900	9618000	0	0	0	19054000	9435900	9618000	0	0	0	0	0	0	43269	1162	40740	263248	353042	353042			1	
RFGPYYTEPVIAGLDPK	1	Unmodified	1921.9938	0.993799	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							3	1	1		76.524	75.456	3	2.4526E-06	62179	160511_QHF_FH_JSI9i_3	97.579	88.637			1.0243	0.89288	5.5297	4	1	Linear	1.1229	0.91173	8.7708	2	0	Median	0.83858	0.95492	NaN	1	0	Median	0.97828	0.93371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	723550000	363070000	360480000	234820000	97153000	137670000	170050000	86266000	83783000	318670000	179650000	139020000	0	0	0	43270	1672	40741	263249;263250;263251;263252;263253	353043;353044;353045;353046;353047;353048;353049;353050;353051;353052;353053;353054;353055;353056	353053			14	
RFGSEFSPELQASFQK	1	Unmodified	1856.9057	0.90571227	72	CON__Q3SX09			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.33	4.14		1	7						1	4	3	2		64.627	62.681	2;3	5.9375E-06	52521	160511_QHF_FH_JSI10i_3	109.35	103.23		+	0.85247	0.79766	20.998	7	0	Median	0.89888	0.71253	3.7265	3	0	Plateau	0.68945	0.80987	2.1493	2	0	Median	1.1546	1.0868	6.7949	2	0	Median	NaN	NaN	NaN	0	0	Median	1204900000	623070000	581880000	566460000	282470000	283990000	282680000	166910000	115770000	355810000	173700000	182120000	0	0	0	43271	72	40742	263254;263255;263256;263257;263258;263259;263260;263261;263262	353057;353058;353059;353060;353061;353062;353063;353064;353065;353066;353067;353068;353069;353070	353062			14	
RFLLEEPMPFFYLK	1	Unmodified	1828.9586	0.95859946	2783	Q17RY6	LY6K	Lymphocyte antigen 6K	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.53	101.53	3	0.00023018	90592	160511_QHF_FH_JSI11i_3	67.234	61.594			0.47543	0.44915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47543	0.44915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	200930000	109170000	91760000	0	0	0	0	0	0	200930000	109170000	91760000	0	0	0	43272	2783	40743	263263	353071	353071			1	
RFLLEEPMPFFYLK	1	Oxidation (M)	1844.9535	0.95351408	2783	Q17RY6	LY6K	Lymphocyte antigen 6K	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		98.834	98.834	3	0.025924	88026	160511_QHF_FH_JSI11i_3	30.483	22.306			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43273	2783	40743	263264	353072	353072			1	
RFLVTVIK	1	Unmodified	974.62769	0.62768692	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	58.288	48.971	3	0.00393	25855	160513_QHF_FH_JSI9Kac_6	56.729	32.574			0.85325	0.92228	9.3755	4	0	Median	1.1942	1.0113	NaN	1	0	Median	0.82264	0.97349	NaN	1	0	Median	0.88501	0.87377	NaN	1	0	Median	0.76575	0.82615	NaN	1	0	Median	322030000	167830000	154200000	125290000	59013000	66276000	136050000	78294000	57753000	33596000	17048000	16549000	27095000	13475000	13620000	43274	231	40744	263265;263266;263267;263268	353073;353074	353073			2	
RFNDGSDEK	1	Unmodified	1066.468	0.46795139	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.74	5.53	1	7	9					6		4	6	8	5	5.7184	2.8304	2;3	5.5522E-08	3075	160511_QHF_FH_JSI11i_3	143.21	94.71			1.0629	1.0013	25.213	21	5	Median	1.5818	0.90682	32.369	4	0	Linear	0.87766	1.0358	21.668	6	1	Median	1.1574	1.1251	26.924	7	3	Median	0.83355	0.88295	6.8663	4	1	Median	14399000000	6352000000	8046900000	2117600000	973420000	1144200000	4558100000	2233200000	2324900000	6729900000	2636600000	4093300000	993290000	508820000	484470000	43275	1263	40745	263269;263270;263271;263272;263273;263274;263275;263276;263277;263278;263279;263280;263281;263282;263283;263284;263285;263286;263287;263288;263289;263290;263291	353075;353076;353077;353078;353079;353080;353081;353082;353083;353084;353085;353086;353087;353088;353089;353090;353091;353092;353093;353094;353095;353096;353097;353098;353099;353100;353101	353075			26	
RFNDGSDEKK	2	Unmodified	1194.5629	0.56291441	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			5.1793	4.6911	3	0.029577	2756	160511_QHF_FH_JSI9i_3	32.859	14.548			0.96436	0.93045	54.987	2	0	Median	1.6852	1.3726	NaN	1	0	Median	0.55187	0.63071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139250000	55004000	84250000	90473000	30566000	59907000	48780000	24438000	24342000	0	0	0	0	0	0	43276	1263	40746	263292;263293	353102	353102			1	
RFNDGSDEKK	2	Acetyl (K)	1236.5735	0.57347909	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	1	0	0	2				By MS/MS	15	0								1					1	12.189	2.9119	3	0.056805	4536	160513_QHF_FH_JSI12Kac_5	45.879	25.576			1.0328	1.1216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0328	1.1216	NaN	1	1	Median	1768300	405130	1363200	0	0	0	0	0	0	0	0	0	1768300	405130	1363200	43277	1263	40746	263294	353103	353103			1	
RFPGYDSESK	1	Unmodified	1184.5462	0.54620171	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	4.67	1	8	10						3	7	7	4	4	21.964	20.206	2;3	1.8311E-11	16569	160511_QHF_FH_JSI10i_3	123.51	115.38			0.84431	0.85331	29.681	15	1	Plateau	1.0961	0.91941	5.4288	4	0	Median	0.82343	0.94952	20.339	4	1	Median	1.1008	1.0529	47.168	4	0	Linear	0.7322	0.74215	27.75	3	0	Median	8096900000	4046700000	4050100000	2393600000	1041400000	1352100000	2514700000	1254600000	1260100000	2771100000	1490000000	1281100000	417460000	260650000	156800000	43278	1590	40747	263295;263296;263297;263298;263299;263300;263301;263302;263303;263304;263305;263306;263307;263308;263309;263310;263311;263312;263313;263314;263315;263316	353104;353105;353106;353107;353108;353109;353110;353111;353112;353113;353114;353115;353116;353117;353118;353119;353120;353121;353122;353123;353124;353125;353126;353127;353128;353129;353130;353131;353132;353133;353134;353135;353136;353137;353138;353139;353140;353141;353142;353143;353144;353145;353146;353147;353148;353149;353150;353151;353152;353153;353154;353155;353156;353157;353158;353159;353160;353161	353124			57	
RFPVDIFYTK	1	Unmodified	1284.6867	0.68665836	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		73.058	72.088	2;3	0.0001215	63816	160511_QHF_FH_JSI11i_3	63.408	58.193			1.0081	0.68849	18.762	6	1	Linear	0.76975	0.61657	2.4631	2	0	Median	0.61023	0.68849	1.2979	2	1	Median	0.96922	0.91345	10.409	2	0	Median	NaN	NaN	NaN	0	0	Median	258450000	141380000	117070000	78251000	40956000	37295000	53109000	33631000	19478000	127090000	66791000	60298000	0	0	0	43279	398	40748	263317;263318;263319;263320;263321;263322	353162;353163;353164;353165;353166;353167;353168;353169	353162			8	
RFQNVAK	1	Unmodified	861.48209	0.48208531	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	1		By MS/MS			3	0			3								3			8.1504	7.5998	2;3	0.0067363	5434	160511_QHF_FH_JSI10i_3	53.554	44.782			0.31034	0.36083	55.768	3	3	Median	NaN	NaN	NaN	0	0	Median	0.31034	0.36083	55.768	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	329730000	215010000	114720000	0	0	0	329730000	215010000	114720000	0	0	0	0	0	0	43280	1057	40749	263323;263324;263325	353170;353171;353172	353170			3	
RFSDQFPLPLK	1	Unmodified	1346.7347	0.73467118	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		69.215	68.229	3	0.0028116	56098	160511_QHF_FH_JSI9i_3	45.915	31.658			0.94091	0.77851	5.6132	3	0	Plateau	0.94091	0.76686	NaN	1	0	Median	0.7426	0.85403	NaN	1	0	Median	0.89887	0.83187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	259260000	156060000	103200000	113050000	66484000	46568000	59130000	35210000	23920000	87083000	54367000	32716000	0	0	0	43281	3914	40750	263326;263327;263328	353173;353174;353175;353176;353177	353176			5	
RFSMVVQDGIVK	1	Unmodified	1377.7439	0.74385566	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.89	5.4			7						2	3	4	2		55.838	53.031	2;3	0.00091738	46916	160511_QHF_FH_JSI11i_3	55.314	41.35			0.91553	0.8493	24.182	9	1	Median	0.88908	0.7287	10.746	3	0	Median	0.97418	1.1267	21.921	4	1	Median	0.84247	0.78664	17.542	2	0	Median	NaN	NaN	NaN	0	0	Median	672920000	356380000	316550000	116250000	70581000	45665000	299280000	154350000	144930000	257400000	131450000	125950000	0	0	0	43282	1335	40751	263329;263330;263331;263332;263333;263334;263335;263336;263337	353178;353179;353180;353181;353182;353183;353184;353185;353186;353187	353179			10	
RFSMVVQDGIVK	1	Oxidation (M)	1393.7388	0.73877028	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	1	1	By MS/MS				15	0								1		1				51.425	40.933	3	0.032136	22022	160513_QHF_FH_JSI9Kac_5	34.386	26.775			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43283	1335	40751	263338	353188	353188			1	
RFTDEESR	0	Unmodified	1038.473	0.47303677	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			4							1	2	1		7.0016	6.603	2;3	0.004621	4544	160511_QHF_FH_JSI10i_3	68.371	47.85			1.0085	1.0487	20.511	4	0	Median	1.7573	1.482	NaN	1	0	Median	0.85057	0.97786	8.9738	2	0	Median	1.112	1.0554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	310900000	192030000	118870000	34397000	14460000	19937000	251680000	163130000	88549000	24824000	14435000	10388000	0	0	0	43284	5124	40752	263339;263340;263341;263342	353189;353190;353191	353189			2	
RFVMEVEVDGQK	1	Unmodified	1435.7129	0.71294946	2325;4243	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		48.489	47.303	2;3	0.0022703	41628	160511_QHF_FH_JSI11i_3	76.143	45.579			0.98383	0.9402	23.279	4	3	Median	1.2543	1.0008	NaN	1	1	Median	0.73199	0.84959	5.4987	2	1	Median	1.505	1.3857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154280000	85482000	68798000	49082000	23745000	25337000	77387000	49864000	27523000	27811000	11873000	15938000	0	0	0	43285	2325;4243	40753	263343;263344;263345;263346;263347	353192;353193;353194;353195;353196	353192			4	
RFVSEAELDER	0	Unmodified	1349.6575	0.65754307	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.783	30.378	2	0.0011091	24829	160511_QHF_FH_JSI9i_3	66.19	22.382			1.3629	1.1056	NaN	1	0	Median	1.3629	1.1056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26136000	10497000	15640000	26136000	10497000	15640000	0	0	0	0	0	0	0	0	0	43286	4610	40754	263348	353197;353198	353198			2	
RFVSEGDGGR	0	Unmodified	1078.5156	0.51557028	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							3	2			8.9807	8.4285	2;3	6.6078E-05	6070	160511_QHF_FH_JSI9i_3	90.15	48.041			0.68652	0.67198	10.293	5	0	Median	0.80283	0.62151	12.817	3	0	Plateau	0.55454	0.62954	9.2268	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239480000	142730000	96750000	161900000	91733000	70170000	77575000	50995000	26580000	0	0	0	0	0	0	43287	2846	40755	263349;263350;263351;263352;263353	353199;353200;353201;353202;353203;353204	353201			6	
RFYLDVK	1	Unmodified	939.5178	0.51780212	2152;4213	Q00577;Q9UJV8;Q96QR8	PURA;PURG;PURB	Transcriptional activator protein Pur-alpha;Purine-rich element-binding protein gamma;Transcriptional activator protein Pur-beta	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		40.419	39.406	3	0.0048954	34338	160511_QHF_FH_JSI11i_3	57.177	38.447			0.82738	0.69863	17.42	3	0	Plateau	0.96474	0.77653	NaN	1	0	Median	0.82738	0.98189	NaN	1	0	Median	0.75349	0.69863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	192150000	98171000	93984000	59223000	30783000	28440000	54709000	24433000	30275000	78223000	42955000	35268000	0	0	0	43288	2152;4213	40756	263354;263355;263356	353205;353206;353207;353208;353209;353210;353211;353212;353213	353206			9	
RFYPAEWQDFLDSLQK	1	Unmodified	2041.9898	0.98977625	5578	Q9Y3C1	NOP16	Nucleolar protein 16	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.377	84.657	3	0.0081702	48145	160513_QHF_FH_JSI10Kac_6	49.463	32.384			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14631000	0	14631000	0	0	0	14631000	0	14631000	0	0	0	0	0	0	43289	5578	40757	263357	353214	353214			1	
RGADPGMPEPTVLSLLWG	0	Unmodified	1894.9611	0.96111866	5189	Q9P0U1	TOMM7	Mitochondrial import receptor subunit TOM7 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.31	102.26	2	4.1761E-07	89045	160511_QHF_FH_JSI12i_3	121.04	106.48			1.0452	0.8958	20.922	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0452	1.1967	NaN	1	0	Median	1.05	1.0158	NaN	1	0	Median	0.75904	0.78994	NaN	1	0	Median	1150900000	606240000	544640000	0	0	0	99564000	52489000	47075000	477480000	236340000	241140000	573830000	317410000	256420000	43290	5189	40758	263358;263359;263360	353215;353216;353217	353217			3	
RGAGMPGQHGQITQQELDTVVK	1	Oxidation (M)	2365.1808	0.18084127	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				44.897	43.297	3	1.1257E-05	35249	160511_QHF_FH_JSI9i_3	61.181	46.252			1.1543	0.91901	NaN	1	0	Median	1.1543	0.91901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52353000	25462000	26892000	52353000	25462000	26892000	0	0	0	0	0	0	0	0	0	43291	1648	40759	263361	353218;353219	353218		1308	2	
RGALVVEDNDSGVPVEETK	1	Unmodified	2013.0015	0.0014631481	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			44.154	42.608	3	3.6212E-05	35473	160511_QHF_FH_JSI10i_3	67.43	58.93			0.84234	0.93707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84234	0.93707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20266000	9848900	10417000	0	0	0	20266000	9848900	10417000	0	0	0	0	0	0	43292	4202	40760	263362	353220;353221	353221			2	
RGALVVEDNDSGVPVEETKK	2	Unmodified	2141.0964	0.096426166	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			37.728	36.255	3;4	1.0356E-05	29503	160511_QHF_FH_JSI9i_3	72.421	67.874			1.2935	1.0506	16.733	3	0	Plateau	1.2816	1.0524	0.24417	2	0	Median	0.70928	0.78763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90633000	33801000	56831000	70238000	22257000	47981000	20395000	11544000	8850300	0	0	0	0	0	0	43293	4202	40761	263363;263364;263365	353222;353223;353224;353225;353226	353223			5	
RGAPPSSNIEDFHGLLPK	1	Unmodified	1934.001	0.0010096381	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			59.647	58.115	3;4	3.9997E-08	47593	160511_QHF_FH_JSI9i_3	99.891	82.609			1.0096	0.88428	16.86	4	2	Median	1.0779	0.88428	3.1178	2	0	Median	0.77901	0.90612	28.933	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155820000	82850000	72969000	88563000	41007000	47555000	67257000	41843000	25414000	0	0	0	0	0	0	43294	1556	40762	263366;263367;263368;263369;263370	353227;353228;353229;353230;353231;353232;353233	353233			7	
RGDDSFGDK	1	Unmodified	995.43084	0.4308376	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	2	3	2	6.4085	4.9665	2	1.2912E-05	3750	160511_QHF_FH_JSI11i_3	110.31	99.436			0.9298	0.9764	23.124	8	1	Median	1.4516	1.2593	NaN	1	0	Median	0.7583	0.91094	2.4322	2	1	Median	1.0435	1.009	10.987	3	0	Median	0.71953	0.76082	37.291	2	0	Median	2619000000	1272700000	1346300000	270820000	103320000	167500000	353470000	184540000	168940000	1313600000	603980000	709590000	681140000	380870000	300280000	43295	1237	40763	263371;263372;263373;263374;263375;263376;263377;263378	353234;353235;353236;353237;353238;353239;353240;353241;353242;353243;353244;353245;353246;353247	353234			13	
RGDIIGVQGNPGK	1	Unmodified	1309.7102	0.71024735	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		4	6							4	4	2		22.783	21.841	2;3	1.0698E-05	17857	160511_QHF_FH_JSI10i_3	126.71	107.44			1.2933	1.3481	34.211	7	1	Median	2.0226	1.6978	15.945	3	0	Median	0.774	0.90278	28.029	3	1	Plateau	0.72834	0.68884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1063300000	470160000	593120000	428330000	136960000	291370000	433380000	218380000	215000000	201560000	114810000	86749000	0	0	0	43296	2614	40764	263379;263380;263381;263382;263383;263384;263385;263386;263387;263388	353248;353249;353250;353251;353252;353253;353254;353255;353256;353257;353258;353259;353260;353261	353253			14	
RGDINLLMLGDPGTAK	1	Unmodified	1669.8821	0.88214006	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	2	3	69.266	68.72	2;3	1.0211E-05	57701	160511_QHF_FH_JSI10i_3	96.666	84.689			0.90268	0.85504	35.828	7	2	Median	NaN	NaN	NaN	0	0	Median	0.90856	1.0591	3.8745	2	0	Median	0.95715	0.9158	9.7091	2	0	Median	0.53586	0.52576	12.056	3	2	Median	1301100000	727140000	573990000	0	0	0	169570000	95055000	74518000	644280000	321320000	322960000	487280000	310770000	176510000	43297	1410	40765	263389;263390;263391;263392;263393;263394;263395	353262;353263;353264;353265;353266;353267;353268;353269;353270;353271;353272;353273;353274;353275;353276;353277	353268			16	
RGDLPFVVPR	0	Unmodified	1154.656	0.65602693	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							3	2	2		53.412	52.384	2;3	0.00011092	43000	160511_QHF_FH_JSI9i_3	64.439	49.772			0.96462	0.92859	30.403	7	0	Median	1.5782	1.209	7.7342	3	0	Plateau	0.64192	0.7845	10.162	2	0	Median	0.8235	0.77967	24.719	2	0	Median	NaN	NaN	NaN	0	0	Median	386280000	192510000	193770000	198670000	84345000	114330000	150360000	87838000	62526000	37245000	20332000	16913000	0	0	0	43298	1436	40766	263396;263397;263398;263399;263400;263401;263402	353278;353279;353280;353281;353282;353283;353284;353285;353286;353287;353288	353280			8	
RGDSQPYQALK	1	Unmodified	1261.6415	0.64149908	4412	Q9BTA9	WAC	WW domain-containing adapter protein with coiled-coil	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		15.695	15.189	2	0.00030483	12353	160511_QHF_FH_JSI10i_3	76.465	38.989			1.1001	1.1649	3.3649	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0131	1.1929	NaN	1	0	Median	1.1947	1.1375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28156000	11539000	16617000	0	0	0	17092000	7166100	9926000	11064000	4372500	6691100	0	0	0	43299	4412	40767	263403;263404	353289;353290	353290			2	
RGDTVATLSER	0	Unmodified	1203.6208	0.62076364	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.57	4.69		2	4						1	3	3	1		16.76	14.683	2;3	3.431E-05	11940	160511_QHF_FH_JSI9i_3	71.176	56.496			0.73163	0.82425	33.961	7	1	Median	1.5337	1.2403	41.667	3	0	Median	0.6677	0.77368	23.158	3	1	Median	1.0614	1.048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	600960000	269390000	331570000	373020000	143030000	229990000	224010000	124580000	99428000	3933000	1779300	2153700	0	0	0	43300	1205	40768	263405;263406;263407;263408;263409;263410;263411	353291;353292;353293;353294;353295;353296;353297;353298;353299;353300;353301	353298			11	
RGDTYELQVR	0	Unmodified	1235.6258	0.62584901	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		23.506	22.876	3	0.00093579	19227	160511_QHF_FH_JSI11i_3	55.353	31.263			0.88863	1.0976	31.926	3	1	Plateau	1.6646	1.4559	NaN	1	0	Median	0.88863	1.0976	NaN	1	0	Median	2.2231	2.0756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80568000	30131000	50438000	18731000	7314800	11417000	40101000	15781000	24321000	21735000	7034900	14701000	0	0	0	43301	4641	40769	263412;263413;263414;263415	353302;353303;353304;353305	353302			2	
RGEAGWEGGYPEIVK	1	Unmodified	1646.8053	0.80526994	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							1	4	3	3	51.438	50.782	2;3	1.4523E-05	44561	160511_QHF_FH_JSI11i_3	116.86	106.09			1.0351	1.048	26.197	8	3	Median	1.7001	1.4563	NaN	1	1	Median	0.88576	1.077	18.344	3	1	Median	1.1391	1.1045	5.3619	3	1	Plateau	0.60361	0.60492	NaN	1	0	Median	1394800000	695740000	699050000	114710000	47349000	67361000	372770000	195980000	176790000	746720000	359130000	387590000	160590000	93280000	67307000	43302	2282	40770	263416;263417;263418;263419;263420;263421;263422;263423;263424;263425;263426	353306;353307;353308;353309;353310;353311;353312;353313;353314;353315;353316;353317;353318;353319;353320;353321;353322;353323;353324;353325;353326	353308			21	
RGEAHLAVNDFELAR	0	Unmodified	1696.8645	0.86451616	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			9							6	3			51.318	49.733	3;4	4.1795E-05	41242	160511_QHF_FH_JSI9i_3	74.772	70.381			1.0591	0.89866	29.564	9	2	Median	1.0843	0.87716	28.921	6	1	Median	0.86372	1.0073	26.64	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	662270000	310870000	351390000	463790000	239480000	224310000	198470000	71392000	127080000	0	0	0	0	0	0	43303	2193	40771	263427;263428;263429;263430;263431;263432;263433;263434;263435	353327;353328;353329;353330;353331;353332;353333;353334;353335;353336;353337	353335			8	
RGEAQLLMNEFESAK	1	Unmodified	1721.8407	0.84066917	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							1	3	2		65.506	64.714	2;3	4.9899E-05	57164	160511_QHF_FH_JSI9i_2	87.647	76.368			0.90511	0.97303	9.1277	6	2	Median	1.165	0.98482	NaN	1	0	Median	0.82248	0.9664	4.5861	3	0	Median	1.0585	0.99188	18.613	2	2	Median	NaN	NaN	NaN	0	0	Median	294900000	138970000	155930000	52679000	18850000	33828000	167700000	82006000	85694000	74516000	38109000	36407000	0	0	0	43304	2419	40772	263436;263437;263438;263439;263440;263441	353338;353339;353340;353341;353342;353343;353344;353345	353344			8	
RGEDVETSK	1	Unmodified	1019.4884	0.48835248	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.662	4	7	2							2	4	3	4	4.9018	4.5811	2;3	1.5488E-05	2417	160511_QHF_FH_JSI11i_3	122.96	71.769			0.91276	0.96797	52.098	12	1	Median	1.1915	0.98224	32.293	2	0	Median	0.80196	0.97224	81.475	4	1	Median	0.98316	0.97223	3.0225	2	0	Median	0.76845	0.82407	42.207	4	0	Median	2624500000	1247900000	1376600000	477270000	180480000	296790000	886620000	427580000	459040000	803270000	401040000	402230000	457300000	238770000	218530000	43305	455	40773	263442;263443;263444;263445;263446;263447;263448;263449;263450;263451;263452;263453;263454	353346;353347;353348;353349;353350;353351;353352;353353;353354;353355	353346			9	
RGEDVETSKK	2	Unmodified	1147.5833	0.5833155	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		4.5961	4.3464	3	0.00035956	2163	160511_QHF_FH_JSI10i_3	85.522	64.744			1.0245	0.89073	11.457	2	0	Median	1.2073	0.96589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86934	0.82142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	555560000	294780000	260770000	147030000	70767000	76262000	0	0	0	408530000	224020000	184510000	0	0	0	43306	455	40774	263455;263456;263457	353356;353357;353358	353357			3	
RGEEALK	1	Unmodified	801.43447	0.43446642	5782				yes	yes	0	0	0	1		By MS/MS			2	0		2									2			1.6214	1.2701	2	0.046198	756	160511_QHF_FH_JSI10i_2	44.692	0	+		0.91797	1.121	0	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91797	1.121	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76248000	42411000	33837000	0	0	0	76248000	42411000	33837000	0	0	0	0	0	0	43307	5782	40775	263458;263459	353359	353359			1	
RGEQADHFTQTPLDPGSQVLVR	0	Unmodified	2450.2302	0.23023431	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			57.634	56.093	4	9.0152E-05	46865	160511_QHF_FH_JSI10i_3	53.059	45.255			1.3664	1.5751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3664	1.5751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24062000	11959000	12103000	0	0	0	24062000	11959000	12103000	0	0	0	0	0	0	43308	4417	40776	263460	353360;353361	353360			2	
RGESLDNLDSPR	0	Unmodified	1357.6586	0.65860571	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	3	1		23.145	22.313	2;3	0.00021173	18228	160511_QHF_FH_JSI10i_3	67.118	52.087			0.45276	0.54561	74.843	4	1	Median	NaN	NaN	NaN	0	0	Median	0.7535	0.54561	57.203	3	0	Plateau	0.20203	0.20224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	286580000	202070000	84508000	0	0	0	179940000	119070000	60876000	106640000	83009000	23632000	0	0	0	43309	3799	40777	263461;263462;263463;263464;263465	353362;353363;353364;353365;353366	353362			5	
RGESMQPNR	0	Unmodified	1073.5036	0.50362539	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.2961	4.7967	2	0.010135	2762	160511_QHF_FH_JSI9i_3	64.04	21.442			1.4522	1.1752	NaN	1	1	Median	1.4522	1.1752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36624000	17004000	19619000	36624000	17004000	19619000	0	0	0	0	0	0	0	0	0	43310	570	40778	263466	353367	353367			1	
RGETESEEFEK	1	Unmodified	1339.5892	0.58918874	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							2	2	3		11.246	10.883	2;3	1.3584E-07	8573	160511_QHF_FH_JSI11i_3	98.105	65.776			1.1075	1.0366	27.021	6	0	Median	1.9452	1.6268	13.051	2	0	Median	0.78066	0.94655	1.1019	2	0	Median	1.1075	1.0366	10.722	2	0	Median	NaN	NaN	NaN	0	0	Median	232070000	102250000	129820000	49537000	16509000	33028000	78569000	43012000	35557000	103960000	42733000	61232000	0	0	0	43311	2233	40779	263467;263468;263469;263470;263471;263472;263473	353368;353369;353370;353371;353372;353373;353374;353375;353376	353371			9	
RGEVVEAK	1	Unmodified	886.48723	0.48723027	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			5.7839	5.3551	2	0.0471	3338	160511_QHF_FH_JSI10i_2	38.086	7.8319			0.50755	0.62052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50755	0.62052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72494000	44303000	28190000	0	0	0	72494000	44303000	28190000	0	0	0	0	0	0	43312	3798	40780	263474	353377	353377			1	
RGFAFVTFDDHDSVDK	1	Unmodified	1854.8537	0.8536767	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	68.466	59.5	3;4	4.8948E-12	32432	160513_QHF_FH_JSI10Kac_6	131.51	113.81			1.1672	1.2131	28.517	8	1	Median	1.6154	1.3902	12.621	2	0	Median	0.96046	1.1277	3.6608	2	0	Median	1.514	1.4551	14.998	2	0	Median	0.70531	0.76303	9.7299	2	1	Median	522200000	268520000	253680000	99287000	35519000	63767000	349240000	194220000	155020000	34131000	13798000	20333000	39547000	24985000	14562000	43313	936	40781	263475;263476;263477;263478;263479;263480;263481;263482	353378;353379;353380;353381;353382;353383;353384;353385;353386;353387;353388;353389	353388			9	
RGFAFVTFDDHDTVDK	1	Unmodified	1868.8693	0.86932676	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									4	2	2			68.511	60.276	3;4	8.5555E-08	32963	160513_QHF_FH_JSI10Kac_6	114.52	96.557			0.77641	0.93182	23.302	4	1	Linear	1.6282	1.3925	23.327	2	1	Median	0.84252	1.0032	3.0745	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74861000	38121000	36741000	16513000	6124900	10388000	58349000	31996000	26353000	0	0	0	0	0	0	43314	1763	40782	263483;263484;263485;263486	353390;353391;353392;353393;353394	353391			5	
RGFEVVYMTEPIDEYCVQQLK	1	Unmodified	2603.24	0.23999564	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.38		5	7						3	1	3	8	3	86.552	84.16	2;3	5.0991E-48	42337	160513_QHF_FH_JSI10Kac_6	185.87	171.55			0.93365	0.93217	25.798	12	3	Median	1.5668	1.3724	NaN	1	0	Median	1.0882	1.2767	8.4913	3	0	Median	0.89866	0.90774	11.772	5	2	Median	0.70267	0.6975	10.648	3	1	Median	2306500000	1074200000	1232300000	98889000	41243000	57646000	644790000	290970000	353820000	1334700000	606760000	727910000	228130000	135240000	92885000	43315	898	40783	263487;263488;263489;263490;263491;263492;263493;263494;263495;263496;263497;263498;263499;263500;263501	353395;353396;353397;353398;353399;353400;353401;353402;353403;353404;353405;353406;353407;353408;353409;353410;353411;353412;353413;353414;353415;353416;353417;353418;353419;353420;353421;353422;353423;353424;353425;353426;353427;353428;353429;353430;353431;353432;353433	353433			39	
RGFEVVYMTEPIDEYCVQQLK	1	Oxidation (M)	2619.2349	0.23491026	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		77.42	76.721	3	4.4444E-06	64309	160511_QHF_FH_JSI10i_3	69.763	62.141			1.1233	1.1627	43.265	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3631	1.5788	NaN	1	0	Median	0.92566	0.85624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	156550000	68257000	88297000	0	0	0	42353000	19514000	22840000	114200000	48743000	65457000	0	0	0	43316	898	40783	263502;263503	353434;353435;353436;353437	353436		472	4	
RGFGFVTFDDHDPVDK	1	Unmodified	1850.8588	0.85876208	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			13.4	5.2			1						4	2	3			69.085	62.266	3;4	1.2061E-11	33906	160513_QHF_FH_JSI10Kac_6	129.11	112.03			1.1601	1.3786	20.879	5	1	Median	1.6628	1.4319	1.7168	2	0	Median	1.0893	1.2802	22.047	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207560000	94417000	113140000	56592000	25795000	30797000	150970000	68622000	82348000	0	0	0	0	0	0	43317	1212	40784	263504;263505;263506;263507;263508	353438;353439;353440;353441;353442;353443	353442			6	
RGFGFVYFQNHDAADK	1	Unmodified	1870.8751	0.87508084	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									6	3	3			63.585	54.876	3;4	0.00072768	28837	160513_QHF_FH_JSI9Kac_6	72.315	56.68			1.2166	1.036	10.639	5	1	Median	1.3806	1.1448	7.4424	3	1	Median	0.80123	0.94976	0.73169	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101480000	52319000	49158000	41434000	17435000	23999000	60043000	34884000	25159000	0	0	0	0	0	0	43318	2361	40785	263509;263510;263511;263512;263513;263514	353444;353445;353446;353447;353448;353449	353444			4	
RGFSDSGGGPPAK	1	Unmodified	1231.5945	0.59454889	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			11.477	10.791	2;3	0.0022391	8293	160511_QHF_FH_JSI9i_3	57.042	53.342			0.87511	0.84861	10.356	3	3	Median	0.94626	0.77648	12.562	2	2	Median	0.74636	0.8515	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139940000	70081000	69854000	101150000	44803000	56350000	38782000	25278000	13504000	0	0	0	0	0	0	43319	4686	40786	263515;263516;263517	353450;353451;353452	353452			3	
RGGADVNIR	0	Unmodified	956.51518	0.51517635	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				9.1312	8.5395	2;3	0.0023352	6236	160511_QHF_FH_JSI9i_3	65.305	28.604			1.4555	1.1818	4.9329	2	0	Median	1.4555	1.1818	4.9329	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161870000	66979000	94887000	161870000	66979000	94887000	0	0	0	0	0	0	0	0	0	43320	910	40787	263518;263519	353453;353454	353453			2	
RGGEVLDSSHDDIK	1	Unmodified	1526.7325	0.73249893	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.227	16.227	3	0.028574	13438	160511_QHF_FH_JSI11i_3	36.022	23.144			0.81516	0.775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81516	0.775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25219000	11993000	13226000	0	0	0	0	0	0	25219000	11993000	13226000	0	0	0	43321	598	40788	263520	353455	353455			0	
RGGPNYQEGLR	0	Unmodified	1245.6214	0.62143234	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				14.6	13.619	2;3	0.034662	10724	160511_QHF_FH_JSI9i_3	31.478	19.946			1.805	1.4811	23.148	2	0	Median	1.805	1.4811	23.148	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64186000	24235000	39951000	64186000	24235000	39951000	0	0	0	0	0	0	0	0	0	43322	1798	40789	263521;263522	353456;353457	353457			1	
RGHVFEESQVAGTPMFVVK	1	Unmodified	2117.0728	0.072794373	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			17							7	8	2		66.326	65.02	3;4	2.0289E-11	53681	160511_QHF_FH_JSI9i_3	107.57	98.629			1.1164	1.0609	29.249	16	7	Median	1.0351	0.84421	14.024	6	2	Median	1.1314	1.2977	30.741	8	5	Median	1.1645	1.0938	3.7808	2	0	Median	NaN	NaN	NaN	0	0	Median	1066000000	531310000	534710000	404870000	184270000	220600000	336660000	176860000	159800000	324490000	170180000	154310000	0	0	0	43323	1033	40790	263523;263524;263525;263526;263527;263528;263529;263530;263531;263532;263533;263534;263535;263536;263537;263538;263539	353458;353459;353460;353461;353462;353463;353464;353465;353466;353467;353468;353469;353470;353471;353472;353473;353474;353475;353476;353477;353478;353479;353480;353481;353482;353483	353483			25	
RGHVFEESQVAGTPMFVVK	1	Oxidation (M)	2133.0677	0.067708995	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			7							6	1			57.7	56.156	3	8.0697E-05	46476	160511_QHF_FH_JSI10i_3	61.757	52.938			0.98776	0.91067	18.088	4	3	Median	0.98858	0.79199	16.735	3	3	Median	0.98695	1.0944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77252000	40233000	37019000	56724000	28483000	28241000	20528000	11751000	8777500	0	0	0	0	0	0	43324	1033	40790	263540;263541;263542;263543;263544;263545;263546	353484;353485;353486;353487;353488;353489;353490	353484		630	7	
RGIEKPPFELPDFIK	2	Unmodified	1784.9825	0.98250603	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		82.567	81.945	4	0.011492	72372	160511_QHF_FH_JSI11i_3	46.408	36.62			0.74721	0.76791	13.092	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62489	0.70001	NaN	1	1	Median	0.89348	0.84239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82083000	42165000	39918000	0	0	0	22265000	13511000	8754700	59817000	28654000	31163000	0	0	0	43325	2412	40791	263547;263548	353491;353492	353491			2	
RGIFVIGFSYPVVPK	1	Unmodified	1677.9606	0.96064837	546	O75600	GCAT	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	85.157	77.264	2;3	0.00014031	42132	160513_QHF_FH_JSI9Kac_6	81.632	73.29			0.8712	1.0046	37.325	3	0	Median	1.6912	1.4224	NaN	1	0	Median	0.8712	1.0046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62098	0.67461	NaN	1	0	Median	190650000	90112000	100540000	58783000	21341000	37442000	109680000	58387000	51295000	0	0	0	22188000	10383000	11805000	43326	546	40792	263549;263550;263551;263552	353493;353494;353495;353496	353493			4	
RGIIGYDV	0	Unmodified	891.48142	0.48141661	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							3	2	3	2	47.512	46.62	2	0.0029163	39975	160511_QHF_FH_JSI12i_2	76.847	65.285			0.9956	1.0391	28.433	10	0	Median	1.4364	1.2294	31.208	3	0	Median	1.0042	1.212	16.608	2	0	Median	1.0798	1.0019	12.147	3	0	Median	0.61711	0.64968	10.966	2	0	Median	2973300000	1560700000	1412700000	305060000	116400000	188660000	541850000	278730000	263110000	1135900000	549170000	586750000	990500000	616370000	374130000	43327	592	40793	263553;263554;263555;263556;263557;263558;263559;263560;263561;263562	353497;353498;353499;353500;353501;353502;353503;353504;353505;353506;353507	353498			11	
RGILTLK	1	Unmodified	799.52797	0.52797287	2062;1916;2070;2015	P60709;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P62736;P63261;P68032;P68133	ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	34.478	33.636	2	0.023911	21946	160511_QHF_FH_JSI10i_3	55.531	4.5647			0.81335	0.68534	48.701	5	1	Median	1.2108	0.97364	51.864	2	1	Median	0.81335	0.94605	NaN	1	0	Median	0.70621	0.68534	NaN	1	0	Median	0.3754	0.37468	NaN	1	0	Median	2245900000	1230500000	1015300000	289560000	93602000	195960000	1237000000	699370000	537640000	594410000	349980000	244430000	124870000	87562000	37310000	43328	1916;2015;2062;2070	40794	263563;263564;263565;263566;263567	353508;353509;353510;353511	353508			4	
RGILTLKYPIEHGIITNWDDMEK	2	Acetyl (K)	2783.4316	0.43163623	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	1	0	0	2		By MS/MS	By MS/MS		16	0									3		2	1		86.178	79.269	3;4	1.6585E-13	44792	160513_QHF_FH_JSI10Kac_6	111.67	98.995			0.93254	1.1007	39.894	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93254	1.1007	39.894	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	335350000	193560000	141800000	0	0	0	283080000	141290000	141800000	52269000	52269000	0	0	0	0	43329	2015;2070	40795	263568;263569;263570	353512;353513;353514	353514	2046;2141		3	
RGIPNYEFK	1	Unmodified	1122.5822	0.58219329	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				34.003	32.573	3	0.014194	26587	160511_QHF_FH_JSI9i_3	33.961	25.002			0.99511	0.81167	NaN	1	0	Median	0.99511	0.81167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35794000	7635000	28159000	35794000	7635000	28159000	0	0	0	0	0	0	0	0	0	43330	3902	40796	263571	353515	353515			1	
RGISSSNEGVEEPSK	1	Unmodified	1574.7536	0.7536283	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				15.006	14.024	2	0.0027346	11032	160511_QHF_FH_JSI9i_3	56.094	45.863			1.2855	1.0722	NaN	1	0	Median	1.2855	1.0722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13603000	4911400	8692100	13603000	4911400	8692100	0	0	0	0	0	0	0	0	0	43331	5113	40797	263572	353516;353517	353516			2	
RGKVEAAGPGGESEPTGSGGTLAHTPR	1	Acetyl (K)	2617.2845	0.28445472	5422	Q9UMN6	KMT2B	Histone-lysine N-methyltransferase 2B	yes	yes	1	0	0	2	By MS/MS	By MS/MS			16	0									2	1	1			38.211	29.404	4	3.6288E-05	16450	160513_QHF_FH_JSI10Kac_6	72.474	66.444			2.2488	2.2733	103.25	2	1	Median	5.4162	4.7176	NaN	1	1	Median	0.93369	1.0954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8662200	2834900	5827300	2842100	307020	2535100	5820100	2527900	3292200	0	0	0	0	0	0	43332	5422	40798	263573;263574	353518;353519;353520	353520	3406		3	
RGLESDVAELR	0	Unmodified	1243.6521	0.65206377	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								3	1		34.896	34.098	2	0.0052803	28391	160511_QHF_FH_JSI10i_3	53.683	22.261			0.94268	1.0884	18.594	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79133	0.93364	21.691	2	0	Median	1.2148	1.1201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116740000	60462000	56277000	0	0	0	88175000	46569000	41606000	28564000	13893000	14671000	0	0	0	43333	2207	40799	263575;263576;263577;263578	353521;353522;353523;353524;353525	353523			5	
RGLFDEEMNEILTDPSDDTK	1	Unmodified	2324.0478	0.047820993	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		84.77	84.77	3	0.046134	75591	160511_QHF_FH_JSI11i_3	23.912	11.43			0.57661	0.53632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57661	0.53632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43632000	22398000	21234000	0	0	0	0	0	0	43632000	22398000	21234000	0	0	0	43334	2636	40800	263579	353526	353526			1	
RGLGAGAGAGEESPATSLPR	0	Unmodified	1852.9391	0.93913766	262	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.896	35.438	3	7.2115E-06	28915	160511_QHF_FH_JSI9i_3	73.688	64.13			1.1437	0.93579	NaN	1	0	Median	1.1437	0.93579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20001000	9755300	10246000	20001000	9755300	10246000	0	0	0	0	0	0	0	0	0	43335	262	40801	263580	353527;353528	353528			2	
RGLVGIEFK	1	Unmodified	1017.5971	0.59711507	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		47.179	45.909	2;3	0.00090852	38682	160511_QHF_FH_JSI10i_3	54.416	38.214			0.94343	0.91146	12.65	5	0	Median	1.0078	0.82214	8.9012	2	0	Median	0.90013	1.0339	5.888	2	0	Median	0.96025	0.91146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	380480000	197100000	183370000	140570000	74715000	65853000	113930000	55434000	58496000	125980000	66954000	59025000	0	0	0	43336	1085	40802	263581;263582;263583;263584;263585	353529;353530;353531;353532;353533;353534;353535;353536	353533			8	
RGMIPVPYVEK	1	Unmodified	1287.7009	0.70092821	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			55.124	53.56	2	0.0028671	43877	160511_QHF_FH_JSI9i_3	56.563	36.776			0.83314	0.8207	11.053	2	0	Median	1.0672	0.88742	NaN	1	0	Median	0.65045	0.759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34468000	17848000	16620000	16360000	7005000	9354800	18108000	10843000	7264800	0	0	0	0	0	0	43337	1582	40803	263586;263587	353537;353538	353538			2	
RGNDAVMAR	0	Unmodified	988.48725	0.48724704	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				6.0856	5.5627	2	0.057521	3611	160511_QHF_FH_JSI9i_3	34.387	23.018			0.99095	0.7917	NaN	1	0	Median	0.99095	0.7917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48604000	23551000	25053000	48604000	23551000	25053000	0	0	0	0	0	0	0	0	0	43338	1194	40804	263588	353539	353539			1	
RGNGLIK	1	Unmodified	756.46062	0.46062159	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			7.1881	6.6513	2	0.058159	4624	160511_QHF_FH_JSI10i_3	41.502	7.7638			1.0556	1.0042	15.364	2	0	Median	1.3905	1.1194	NaN	1	0	Median	0.80138	0.90077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	231050000	100280000	130770000	124740000	56484000	68256000	106310000	43795000	62518000	0	0	0	0	0	0	43339	1987	40805	263589;263590	353540	353540			1	
RGPCIIYNEDNGIIK	1	Unmodified	1760.888	0.88795372	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		52.994	51.432	2;3	4.0641E-05	42924	160511_QHF_FH_JSI10i_3	92.457	76.318			1.0244	1.1927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0244	1.1927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97967000	50046000	47921000	0	0	0	97967000	50046000	47921000	0	0	0	0	0	0	43340	1457	40806	263591;263592;263593	353541;353542;353543;353544	353543			4	
RGPEVTSQGVQTSSPACK	1	Unmodified	1887.9109	0.910874	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			21.507	20.303	3	0.00049644	16593	160511_QHF_FH_JSI10i_3	53.453	42.398			0.74894	0.83322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74894	0.83322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20903000	14038000	6864300	0	0	0	20903000	14038000	6864300	0	0	0	0	0	0	43341	4302	40807	263594	353545;353546	353545			2	
RGPFELEAFYSDPQGVPYPEAK	1	Unmodified	2496.1961	0.19614021	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	3	1	85.953	85.402	3	1.5637E-13	76231	160511_QHF_FH_JSI11i_3	119.94	103.45			1.0232	1.0073	12.494	6	1	Median	1.1591	0.99402	NaN	1	0	Median	0.78861	0.95411	NaN	1	0	Median	1.07	1.0445	15.049	3	1	Median	0.87789	0.97183	NaN	1	0	Median	952140000	452080000	500060000	80224000	35274000	44951000	158250000	88860000	69392000	692590000	317400000	375190000	21069000	10546000	10523000	43342	3852	40808	263595;263596;263597;263598;263599;263600;263601	353547;353548;353549;353550;353551;353552;353553;353554;353555;353556;353557;353558;353559;353560;353561;353562;353563;353564;353565;353566;353567;353568;353569	353550			23	
RGPGLYYVDSEGNR	0	Unmodified	1581.7536	0.75356872	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			34.768	33.332	2;3	8.8353E-05	27817	160511_QHF_FH_JSI10i_3	64.394	50.715			1.2523	1.0583	4.6006	3	0	Plateau	1.3004	1.0488	6.1657	2	0	Median	0.89182	1.0224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170550000	79628000	90918000	111070000	47731000	63339000	59475000	31897000	27579000	0	0	0	0	0	0	43343	1303	40809	263602;263603;263604	353570;353571;353572;353573;353574	353570			5	
RGPQLVCTGSDDGTVK	1	Unmodified	1688.8152	0.8151827	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.475	25.121	3	0.0029687	20350	160511_QHF_FH_JSI9i_3	50.827	38.681			1.4238	1.1528	NaN	1	1	Median	1.4238	1.1528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36346000	15287000	21059000	36346000	15287000	21059000	0	0	0	0	0	0	0	0	0	43344	4029	40810	263605	353575	353575			1	
RGPSEETGGAVFDHPAK	1	Unmodified	1753.8384	0.83836099	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			22.293	21.042	3	4.2666E-05	16925	160511_QHF_FH_JSI9i_3	73.279	55.141			1.0197	1.0068	31.192	2	0	Median	0.97506	0.80755	NaN	1	0	Median	1.0664	1.2553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35642000	19750000	15892000	18821000	10048000	8772300	16821000	9701300	7119900	0	0	0	0	0	0	43345	428	40811	263606;263607;263608	353576;353577;353578	353577			3	
RGQAALDR	0	Unmodified	885.47806	0.47806257	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			5.002	4.5138	2;3	0.0028528	2565	160511_QHF_FH_JSI9i_3	77.318	37.214			0.93827	0.91863	14.272	4	0	Median	1.275	1.0475	15.228	2	0	Median	0.73961	0.86733	4.7948	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1091600000	547350000	544200000	671780000	312080000	359700000	419780000	235270000	184500000	0	0	0	0	0	0	43346	1497	40812	263609;263610;263611;263612	353579;353580;353581;353582	353581			4	
RGSDYETFK	1	Unmodified	1101.5091	0.50908792	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		13.801	13.801	2	0.0013992	11102	160511_QHF_FH_JSI11i_3	85.731	72.742			1.259	1.1678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.259	1.1678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35416000	11629000	23787000	0	0	0	0	0	0	35416000	11629000	23787000	0	0	0	43347	3073	40813	263613;263614	353583;353584	353583			2	
RGSLSNAGDPEIVK	1	Unmodified	1441.7525	0.75250609	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.221	24.866	3	0.0025557	20148	160511_QHF_FH_JSI9i_3	56.46	44.483			1.5179	1.2691	NaN	1	1	Median	1.5179	1.2691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34934000	14545000	20389000	34934000	14545000	20389000	0	0	0	0	0	0	0	0	0	43348	387	40814	263615	353585	353585			1	
RGTAEPQGQK	1	Unmodified	1070.5469	0.54687041	740	O95870	ABHD16A	Abhydrolase domain-containing protein 16A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			1.2932	0.85418	3	0.036371	561	160511_QHF_FH_JSI10i_3	29.534	14.854			0.56723	0.68824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56723	0.68824	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4592800	3529800	1063000	0	0	0	4592800	3529800	1063000	0	0	0	0	0	0	43349	740	40815	263616	353586	353586			1	
RGTGGVDTAATGGVFDISNLDR	0	Unmodified	2178.0665	0.066523021	1019	P12532	CKMT1A	Creatine kinase U-type, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			69.837	68.365	3	8.8335E-06	57222	160511_QHF_FH_JSI10i_3	68.42	58.632			1.5142	1.6866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5142	1.6866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20238000	4814800	15423000	0	0	0	20238000	4814800	15423000	0	0	0	0	0	0	43350	1019	40816	263617	353587	353587			1	
RGTGGVDTAAVGGVFDVSNADR	0	Unmodified	2120.0247	0.024658206	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							3	2	1		58.908	57.836	2;3	5.1107E-19	48262	160511_QHF_FH_JSI10i_3	153.14	135.23			1.2081	1.1142	25.179	6	1	Median	1.6584	1.4371	11.34	3	1	Median	0.75062	0.88677	4.5181	2	0	Median	0.97803	0.98722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1134400000	543410000	591000000	577560000	231910000	345650000	487050000	275580000	211470000	69794000	35911000	33883000	0	0	0	43351	1017	40817	263618;263619;263620;263621;263622;263623	353588;353589;353590;353591;353592;353593;353594;353595;353596;353597;353598;353599;353600	353589			13	
RGVDYNAEIPFEK	1	Unmodified	1536.7573	0.75725712	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.583	51.583	3	0.0019473	45641	160511_QHF_FH_JSI11i_3	51.771	30.221			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43352	4271	40818	263624	353601	353601			1	
RGVLKEYGVK	2	Acetyl (K)	1189.6819	0.68190733	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			38.312	29.712	3	0.02107	16674	160513_QHF_FH_JSI10Kac_6	47.971	31.774			1.0647	1.2167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0647	1.2167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4911800	2530900	2380900	0	0	0	4911800	2530900	2380900	0	0	0	0	0	0	43353	1372	40819	263625	353602	353602	1312		1	
RGVLLMLFGGVPK	1	Oxidation (M)	1401.8166	0.81662667	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	1	1	By MS/MS				16	0									1	1				80.439	71.806	3	0.0021138	38969	160513_QHF_FH_JSI9Kac_6	52.555	39.418			1.6076	1.395	NaN	1	0	Median	1.6076	1.395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75344000	30830000	44514000	75344000	30830000	44514000	0	0	0	0	0	0	0	0	0	43354	2545	40820	263626	353603;353604	353604		2005	2	
RGVLLMLFGGVPK	1	Unmodified	1385.8217	0.82171205	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.8	78.175	3	0.00039011	43493	160513_QHF_FH_JSI10Kac_6	57.52	48.233			0.81261	0.97221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81261	0.97221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122790000	73969000	48821000	0	0	0	122790000	73969000	48821000	0	0	0	0	0	0	43355	2545	40820	263627	353605	353605			1	
RGVTIKPTVDDD	1	Unmodified	1314.6779	0.67794416	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			25.42	24.113	3	0.015503	19482	160511_QHF_FH_JSI9i_3	36.284	33.097			0.89808	0.85907	5.7531	2	0	Median	1.0845	0.89473	NaN	1	0	Median	0.74369	0.82482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49119000	26795000	22324000	28610000	16178000	12432000	20509000	10617000	9891900	0	0	0	0	0	0	43356	1508	40821	263628;263629	353606;353607	353607			2	
RGWDENVYYTVPLVR	0	Unmodified	1865.9424	0.94243213	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	1		By MS/MS			3	0			3								3			76.516	75.1	3	0.00014873	62833	160511_QHF_FH_JSI10i_3	54.501	44.162			0.94335	1.0505	39.844	3	2	Median	NaN	NaN	NaN	0	0	Median	0.94335	1.0505	39.844	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39851000	17671000	22181000	0	0	0	39851000	17671000	22181000	0	0	0	0	0	0	43357	4336	40822	263630;263631;263632	353608;353609;353610	353608			3	
RHENLPELLEMK	1	Unmodified	1507.7817	0.78169773	5782				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.667	7	1	1							3	1	2	3	103.55	103.47	2	0.052505	94174	160511_QHF_FH_JSI11i_1	35.944	25.99	+		0.9862	1.0009	5.6998	9	0	Median	1.3185	1.1087	5.9078	3	0	Plateau	0.80221	0.94688	NaN	1	0	Median	0.96018	0.93023	0	2	0	Median	0.9862	1.0319	2.4373	3	0	Plateau	2513400000	1269700000	1243700000	838720000	386690000	452030000	543420000	309270000	234140000	553180000	269650000	283530000	578120000	304090000	274030000	43358	5782	40823	263633;263634;263635;263636;263637;263638;263639;263640;263641	353611;353612;353613	353611			3	
RHEQFIPIAADK	1	Unmodified	1423.7572	0.75719754	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1				By MS/MS	16	0									1				1	45.491	35.935	3	0.018401	18733	160513_QHF_FH_JSI12Kac_6	32.068	27.266			2.0647	2.2334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0647	2.2334	NaN	1	0	Median	6309700	2107400	4202300	0	0	0	0	0	0	0	0	0	6309700	2107400	4202300	43359	5646	40824	263642	353614	353614			1	
RHLTGEFEK	1	Unmodified	1115.5724	0.57235688	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.68	2.9			18						1	6	7	5	1	15.761	14.597	2;3	1.1724E-06	11780	160511_QHF_FH_JSI9i_3	108.43	83.294			0.55785	0.58245	60.7	16	6	Median	0.5383	0.43318	36.687	6	2	Median	0.55035	0.64233	69.392	5	2	Median	0.58255	0.55379	11.187	4	1	Median	2.3419	2.6365	NaN	1	1	Median	1890700000	1157800000	732890000	894700000	509470000	385220000	379710000	222400000	157310000	614360000	425210000	189150000	1937700	738130	1199500	43360	2021	40825	263643;263644;263645;263646;263647;263648;263649;263650;263651;263652;263653;263654;263655;263656;263657;263658;263659;263660;263661	353615;353616;353617;353618;353619;353620;353621;353622;353623;353624;353625;353626;353627;353628;353629;353630;353631;353632;353633;353634;353635;353636;353637;353638;353639;353640;353641;353642;353643;353644;353645;353646;353647;353648;353649;353650;353651	353641			37	
RHNIYSNILGFLGGVSWAMLVAR	0	Unmodified	2573.3689	0.36891681	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			75.809	75.068	4	0.057064	66789	160511_QHF_FH_JSI10i_2	13.057	5.9457			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35681000	0	35681000	0	0	0	35681000	0	35681000	0	0	0	0	0	0	43361	1724	40826	263662	353652	353652			1	
RHPYFYAPELLYYANK	1	Unmodified	2044.0207	0.020682448	50	CON__P02769			yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									3		1		2	77.866	70.02	3	7.4809E-05	38426	160513_QHF_FH_JSI10Kac_6	82.259	73.44		+	0.92141	1.032	43.239	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1859	1.4011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71593	0.76014	NaN	1	1	Median	232540000	105050000	127490000	0	0	0	202130000	90098000	112030000	0	0	0	30414000	14952000	15463000	43362	50	40827	263663;263664;263665	353653;353654;353655;353656	353655			4	
RHQGTVTEDK	1	Unmodified	1169.5789	0.57889882	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			2.7128	2.2544	3	0.0030834	932	160511_QHF_FH_JSI9i_3	44.847	34.324			1.7018	1.3964	46.086	3	2	Plateau	1.7018	1.3964	NaN	1	0	Median	0.62728	0.74438	40.12	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41187000	20474000	20712000	22921000	10112000	12809000	18266000	10362000	7903500	0	0	0	0	0	0	43363	3685	40828	263666;263667;263668;263669	353657;353658;353659;353660	353659			4	
RHSNVVILTTSNITEK	1	Unmodified	1810.9901	0.9901106	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			49.056	40.135	3	0.00039267	21698	160513_QHF_FH_JSI10Kac_6	64.454	54.666			0.68827	0.67172	46.75	2	0	Median	0.5802	0.48264	NaN	1	0	Median	0.81648	0.93488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18116000	11003000	7112700	5721700	3886500	1835200	12394000	7117000	5277500	0	0	0	0	0	0	43364	2692	40829	263670;263671	353661;353662;353663;353664	353663			4	
RHVFGESDELIGQK	1	Unmodified	1613.8162	0.81616898	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			16							11	4	1		40.419	38.993	3	6.1849E-07	31664	160511_QHF_FH_JSI9i_3	127.36	119.82			0.79939	0.67715	41.775	16	4	Median	0.86877	0.69305	31.15	11	3	Median	0.57475	0.66662	20.827	4	1	Median	0.22993	0.2138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	960510000	586000000	374510000	558440000	284060000	274380000	178660000	119730000	58934000	223410000	182210000	41199000	0	0	0	43365	1908	40830	263672;263673;263674;263675;263676;263677;263678;263679;263680;263681;263682;263683;263684;263685;263686;263687	353665;353666;353667;353668;353669;353670;353671;353672;353673;353674;353675;353676;353677;353678;353679;353680	353670			11	
RIAEFAFEYAR	0	Unmodified	1371.6935	0.69353465	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			65.029	56.617	3	0.00020899	31192	160513_QHF_FH_JSI10Kac_6	68.515	45.503			1.1837	0.86273	26.35	3	2	Plateau	1.4887	1.2656	NaN	1	0	Median	0.92084	1.1105	35.703	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55501000	27607000	27894000	11616000	4447900	7168200	43885000	23159000	20726000	0	0	0	0	0	0	43366	1698	40831	263688;263689;263690	353681;353682;353683	353683			2	
RIAEKGSTIETEQK	2	Acetyl (K)	1630.8526	0.85261407	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	1	0	0	2	By MS/MS				15	0								1		1				31.16	21.724	3	0.00017972	12682	160513_QHF_FH_JSI9Kac_5	91.969	65.428			3.3046	2.7836	NaN	1	0	Median	3.3046	2.7836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10680000	2387400	8292700	10680000	2387400	8292700	0	0	0	0	0	0	0	0	0	43367	3570	40832	263691	353684	353684	2887		1	
RIAELSEDDQK	1	Unmodified	1302.6416	0.64155866	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		17.607	17.069	2;3	0.0045018	13882	160511_QHF_FH_JSI10i_3	49.28	38.954			1.4617	1.5087	13.389	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4082	1.6585	NaN	1	1	Median	1.5173	1.3724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69948000	29475000	40473000	0	0	0	17204000	5806600	11397000	52744000	23668000	29076000	0	0	0	43368	4559	40833	263692;263693	353685;353686	353686			2	
RIAEMETQK	1	Unmodified	1104.5597	0.55974328	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							1	2	3		11.012	10.881	2;3	0.0006774	8448	160511_QHF_FH_JSI11i_3	91.584	50.555			0.72428	0.78502	75.186	4	4	Median	NaN	NaN	NaN	0	0	Median	0.69853	0.8597	NaN	1	1	Median	0.75099	0.71683	92.01	3	3	Median	NaN	NaN	NaN	0	0	Median	487400000	278290000	209110000	0	0	0	58883000	35034000	23848000	428520000	243260000	185260000	0	0	0	43369	4989	40834	263694;263695;263696;263697;263698;263699	353687;353688;353689;353690;353691;353692	353687			6	
RIAKAVNEK	2	Acetyl (K)	1069.6244	0.62439245	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	2	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	17.27	10.17	3	0.01897	6695	160513_QHF_FH_JSI10Kac_6	50.292	27.552			0.3041	0.3573	26.665	3	0	Median	0.3041	0.26104	NaN	1	0	Median	0.29902	0.3573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.40032	0.44363	NaN	1	0	Median	18015000	13406000	4608400	4055400	3155400	900080	9706200	6834800	2871400	0	0	0	4252900	3416000	836960	43370	854	40835	263700;263701;263702	353693	353693	522		1	
RIALTDNALIAR	0	Unmodified	1325.7779	0.77793298	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			53.199	51.637	3	0.00016313	43102	160511_QHF_FH_JSI10i_3	62.338	51.126			0.76494	0.87045	48.221	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76494	0.87045	48.221	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44552000	27025000	17526000	0	0	0	44552000	27025000	17526000	0	0	0	0	0	0	43371	1138	40836	263703;263704	353694;353695	353694			2	
RIANLQTDLSDGLR	0	Unmodified	1570.8427	0.84271808	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				54.751	53.177	2	0.0038591	43646	160511_QHF_FH_JSI9i_3	55.426	29.989			0.9643	0.78595	NaN	1	0	Median	0.9643	0.78595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39619000	18635000	20984000	39619000	18635000	20984000	0	0	0	0	0	0	0	0	0	43372	1192	40837	263705	353696;353697	353697			2	
RIAQAVEK	1	Unmodified	913.53451	0.53451481	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			8.124	7.5528	2;3	0.0059723	5360	160511_QHF_FH_JSI9i_3	42.864	10.544			1.7005	1.6512	18.711	4	1	Median	2.2377	1.8262	22.279	2	1	Median	1.3463	1.5506	16.926	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	314340000	122930000	191410000	211240000	78890000	132350000	103100000	44037000	59064000	0	0	0	0	0	0	43373	1044	40838	263706;263707;263708;263709	353698;353699;353700;353701	353700			4	
RIAYEFVEMK	1	Unmodified	1284.6536	0.65364367	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	1	By matching		By MS/MS	By matching	3	0			4							1		2	1	52.774	52.321	2;3	0.0018257	46191	160511_QHF_FH_JSI11i_3	70.977	58.187			1.1734	1.1555	16.482	4	0	Median	1.4441	1.1942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0749	1.0018	24.208	2	0	Median	1.0818	1.123	NaN	1	0	Median	125020000	61818000	63202000	28329000	12077000	16252000	0	0	0	82125000	45842000	36282000	14566000	3898500	10667000	43374	777	40839	263710;263711;263712;263713	353702;353703;353704	353702			3	
RIDALEFLPFEGK	1	Unmodified	1533.8191	0.81912909	3269	Q7Z4G4	TRMT11	tRNA (guanine(10)-N2)-methyltransferase homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		91.855	91.855	3	0.0023309	81831	160511_QHF_FH_JSI11i_3	37.092	32.29			1.127	1.013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.127	1.013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34240000	22638000	11603000	0	0	0	0	0	0	34240000	22638000	11603000	0	0	0	43375	3269	40840	263714	353705;353706	353705			2	
RIDFTPVSPAPSPTR	0	Unmodified	1639.8682	0.86820455	3253	Q7Z309	FAM122B	Protein FAM122B	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				51.939	50.349	2;3	0.00031937	41250	160511_QHF_FH_JSI9i_3	59.728	48.94			0.92382	0.75831	39.698	2	0	Median	0.92382	0.75831	39.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60724000	32746000	27978000	60724000	32746000	27978000	0	0	0	0	0	0	0	0	0	43376	3253	40841	263715;263716	353707;353708;353709	353708			3	
RIDITLSSVK	1	Unmodified	1130.6659	0.66592292	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3	3	3	2	3	51.161	48.035	2;3	1.4309E-05	42119	160511_QHF_FH_JSI11i_3	101.38	58.298			0.81466	0.88202	26.101	11	3	Median	1.0662	0.86331	41.951	3	1	Plateau	0.78186	0.94638	12.663	3	1	Median	1.1015	1.0289	1.9931	2	0	Median	0.80643	0.82497	1.2873	3	1	Median	737830000	373450000	364380000	128000000	66721000	61278000	189160000	103800000	85364000	201950000	91249000	110700000	218720000	111680000	107040000	43377	2271	40842	263717;263718;263719;263720;263721;263722;263723;263724;263725;263726;263727	353710;353711;353712;353713;353714;353715;353716;353717;353718;353719;353720;353721;353722;353723	353710			14	
RIDMVPELLSSNLCSLK	1	Unmodified	1974.0278	0.027818015	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		94.393	94.393	3	0.00013704	84178	160511_QHF_FH_JSI11i_3	61.648	43.284			0.71887	0.68369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71887	0.68369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26716000	15903000	10813000	0	0	0	0	0	0	26716000	15903000	10813000	0	0	0	43378	5523	40843	263728	353724	353724			1	
RIDSVYLDPLVFR	0	Unmodified	1591.8722	0.8722273	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	85.915	85.41	3	0.00055922	73620	160511_QHF_FH_JSI12i_3	66.285	54.309			0.90479	0.9501	20.139	6	1	Median	1.1618	1.0012	NaN	1	0	Median	0.81058	0.95607	NaN	1	0	Median	0.9588	0.94418	NaN	1	0	Median	0.85383	0.88385	31.404	3	1	Median	104290000	51191000	53102000	11193000	6021400	5171800	17546000	9491100	8055300	12249000	6277600	5971500	63305000	29401000	33904000	43379	417	40844	263729;263730;263731;263732;263733;263734;263735	353725;353726;353727;353728;353729;353730;353731	353731			6	
RIDTNLNK	1	Unmodified	972.53524	0.53524309	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			14.188	13.207	2;3	0.0047784	10361	160511_QHF_FH_JSI9i_3	67.897	15.181			1.3816	1.107	2.335	2	0	Median	1.3816	1.107	2.335	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	431400000	191450000	239960000	431400000	191450000	239960000	0	0	0	0	0	0	0	0	0	43380	1196	40845	263736;263737;263738	353732;353733;353734;353735	353734			3	
RIDTPSLEEPSDLEELEQFAK	1	Unmodified	2445.1911	0.19111441	1062	P14859	POU2F1	POU domain, class 2, transcription factor 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		93.371	93.371	3	1.737E-08	83262	160511_QHF_FH_JSI11i_3	97.457	88.857			1.2585	1.1935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2585	1.1935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36116000	15863000	20253000	0	0	0	0	0	0	36116000	15863000	20253000	0	0	0	43381	1062	40846	263739	353736	353736			1	
RIDYVLQEK	1	Unmodified	1162.6346	0.63462279	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	33.631	33.576	2	6.1449E-05	29244	160511_QHF_FH_JSI11i_3	104.52	55.727			1.155	1.1026	56.923	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79819	0.73725	NaN	1	0	Median	1.6714	1.649	NaN	1	1	Median	121670000	49569000	72102000	0	0	0	0	0	0	93990000	39717000	54273000	27682000	9852500	17830000	43382	5755	40847	263740;263741	353737;353738	353737			2	
RIEAIVK	1	Unmodified	827.52289	0.52288749	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		17.007	17.007	2	0.032516	14169	160511_QHF_FH_JSI11i_3	51.346	20.056			0.96372	0.92742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96372	0.92742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176520000	80769000	95753000	0	0	0	0	0	0	176520000	80769000	95753000	0	0	0	43383	1158	40848	263742	353739;353740	353740			2	
RIEDNLPAGEE	0	Unmodified	1241.5888	0.58879481	347	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	30.722	29.909	2	5.4948E-07	26733	160511_QHF_FH_JSI10i_1	114.4	109.44			1.02	1.05	33.194	7	0	Median	1.4176	1.2062	16.185	2	0	Median	1.3093	1.5494	55.029	2	0	Median	1.02	0.99825	NaN	1	0	Median	0.82797	0.90076	10.472	2	0	Median	485990000	233160000	252830000	84165000	33837000	50328000	158570000	70681000	87893000	104100000	51781000	52323000	139140000	76858000	62287000	43384	347	40849	263743;263744;263745;263746;263747;263748;263749	353741;353742;353743;353744;353745;353746;353747;353748;353749;353750;353751;353752;353753	353748			13	
RIEDYGLKPVPGDLVLK	2	Unmodified	1911.0829	0.082948353	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	68.651	68.064	3;4	0.00010662	60342	160511_QHF_FH_JSI11i_3	67.727	58.07			0.76091	0.85376	39.189	3	0	Median	NaN	NaN	NaN	0	0	Median	0.76091	0.85376	NaN	1	0	Median	1.0779	1.0141	NaN	1	0	Median	0.47903	0.47985	NaN	1	0	Median	229700000	134010000	95682000	0	0	0	30988000	17734000	13254000	105660000	62752000	42913000	93044000	53529000	39515000	43385	4202	40850	263750;263751;263752	353754;353755	353754			2	
RIEELNK	1	Unmodified	900.50288	0.50288033	606;4414;2389	O94776;Q9BTC8;Q13330	MTA2;MTA3;MTA1	Metastasis-associated protein MTA2;Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	11.09	10.759	2	0.018832	8032	160511_QHF_FH_JSI12i_3	81.296	8.0362			1.597	1.3792	50.857	3	2	Median	1.597	1.3792	NaN	1	1	Median	0.71059	0.85753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3102	2.3696	NaN	1	1	Median	532160000	245090000	287070000	107150000	36634000	70520000	157190000	96272000	60920000	0	0	0	267820000	112180000	155630000	43386	606;4414;2389	40851	263753;263754;263755	353756;353757;353758;353759	353759			4	
RIEESAIDEVVVTNTIPHEVQK	1	Unmodified	2505.3075	0.30748157	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		66.86	66.86	4	0.00010298	59546	160511_QHF_FH_JSI11i_3	51.301	38.113			0.73463	0.67655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73463	0.67655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69265000	32656000	36609000	0	0	0	0	0	0	69265000	32656000	36609000	0	0	0	43387	402	40852	263756	353760	353760			1	
RIEFAEQINK	1	Unmodified	1246.667	0.66698555	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							1	3	2		37.056	36.171	2;3	8.9666E-05	30367	160511_QHF_FH_JSI10i_3	64.82	35.862			1.0662	1.0514	13.115	5	0	Median	1.0662	0.87737	NaN	1	0	Median	0.86115	0.99554	7.7186	2	0	Median	1.24	1.1736	3.0559	2	0	Median	NaN	NaN	NaN	0	0	Median	761330000	375820000	385510000	138320000	66386000	71935000	297350000	167790000	129560000	325660000	141650000	184010000	0	0	0	43388	4686	40853	263757;263758;263759;263760;263761;263762	353761;353762;353763;353764;353765;353766	353764			6	
RIEGLDSNVWIEFTK	1	Unmodified	1805.9312	0.93119874	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		86.746	86.746	3	0.032729	77355	160511_QHF_FH_JSI11i_3	32.387	22.048			1.0744	1.0154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0744	1.0154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22747000	12198000	10549000	0	0	0	0	0	0	22747000	12198000	10549000	0	0	0	43389	3176	40854	263763	353767	353767			1	
RIEGSGDQVDTLELSGGAR	0	Unmodified	1958.9657	0.96574634	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	3	3	2	43.809	43.265	2;3	2.4194E-14	38132	160511_QHF_FH_JSI11i_3	126.81	117.06			1.023	1.0305	28.398	9	2	Median	1.2974	1.1079	NaN	1	0	Median	0.90478	1.1095	54.359	3	2	Median	1.0699	1.0305	1.8078	3	0	Median	0.87098	0.90961	2.204	2	0	Median	743870000	366110000	377760000	87789000	43813000	43977000	167250000	80904000	86349000	369110000	175150000	193960000	119720000	66239000	53480000	43390	1711	40855	263764;263765;263766;263767;263768;263769;263770;263771;263772;263773	353768;353769;353770;353771;353772;353773;353774;353775;353776	353769			7	
RIEIQPK	1	Unmodified	882.5287	0.52870115	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.88	0.331		1	7							3	3	1	1	15.582	14.881	2;3	0.0079252	12116	160511_QHF_FH_JSI10i_3	50.127	13.57			1.3164	1.1077	45.049	8	3	Median	1.3072	1.0775	10.282	3	0	Median	1.6801	1.909	77.125	3	3	Median	1.3342	1.2295	NaN	1	0	Median	0.77844	0.77434	NaN	1	0	Median	1789400000	802620000	986820000	571840000	232650000	339190000	776550000	398450000	378100000	364700000	131650000	233050000	76350000	39866000	36484000	43391	1438	40856	263774;263775;263776;263777;263778;263779;263780;263781	353777;353778;353779;353780;353781;353782;353783;353784;353785;353786;353787	353781			11	
RIEPADAHVLQK	1	Unmodified	1375.7572	0.75719754	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.63		1	10						1	3	3	3	3	26.456	24.926	2;3;4	2.7196E-07	20873	160511_QHF_FH_JSI11i_3	129.89	94.665			0.90463	0.82942	29.008	10	3	Median	0.90181	0.72062	18.718	3	2	Median	0.5922	0.68393	24.453	2	1	Median	1.1315	1.0771	15.986	3	0	Median	0.68221	0.72003	58.231	2	0	Median	1344400000	654310000	690110000	391680000	161930000	229740000	428320000	236940000	191380000	489450000	233410000	256040000	34974000	22033000	12941000	43392	4614	40857	263782;263783;263784;263785;263786;263787;263788;263789;263790;263791;263792;263793	353788;353789;353790;353791;353792;353793;353794;353795;353796;353797;353798;353799;353800;353801;353802;353803;353804	353790			17	
RIEPADAHVLQKNLK	2	Acetyl (K)	1772.9897	0.98971667	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	1	0	0	2			By MS/MS		16	0									2			2		54.307	44.579	3;4	8.2037E-07	24072	160513_QHF_FH_JSI11Kac_6	106.42	88.623			0.28333	0.27318	18.042	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28333	0.27318	18.042	2	0	Median	NaN	NaN	NaN	0	0	Median	53720000	44767000	8953200	0	0	0	0	0	0	53720000	44767000	8953200	0	0	0	43393	4614	40858	263794;263795	353805;353806	353805	3199		1	
RIEPAEELNSNDMK	1	Unmodified	1644.7777	0.77773456	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		34.373	33.852	3	0.0080874	29610	160511_QHF_FH_JSI9i_2	46.964	36.479			0.73649	0.65459	126.53	2	2	Median	0.31821	0.26755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7046	1.6015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82034000	42621000	39413000	23139000	17970000	5169200	0	0	0	58895000	24651000	34244000	0	0	0	43394	1576	40859	263796;263797	353807;353808;353809	353809			3	
RIEPLSPELVAAASAVADSLPFDK	1	Unmodified	2495.3272	0.32715438	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		102.27	102.2	3	3.2262E-17	91199	160511_QHF_FH_JSI11i_3	126.27	118.08			0.92322	0.96048	13.527	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94273	1.0569	NaN	1	0	Median	0.90411	0.87287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	205550000	108160000	97387000	0	0	0	30952000	14918000	16034000	174600000	93246000	81353000	0	0	0	43395	3868	40860	263798;263799	353810;353811	353810			2	
RIESPLK	1	Unmodified	841.50215	0.50215205	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			18.311	17.193	3	0.01037	14127	160511_QHF_FH_JSI10i_3	42.869	7.5134			0.75483	0.72576	34.756	2	1	Median	0.69059	0.56762	NaN	1	1	Median	0.82505	0.92796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139000000	80198000	58805000	98559000	60106000	38452000	40444000	20091000	20353000	0	0	0	0	0	0	43396	2092	40861	263800;263801	353812;353813;353814	353813			3	
RIEYIEAR	0	Unmodified	1048.5665	0.56654322	3768	Q8WUW1	BRK1	Protein BRICK1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			24.406	23.151	2	0.06011	18974	160511_QHF_FH_JSI10i_3	40.067	21.089			0.79655	0.89262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79655	0.89262	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21415000	12221000	9194200	0	0	0	21415000	12221000	9194200	0	0	0	0	0	0	43397	3768	40862	263802	353815	353815			1	
RIFQEPTEPK	1	Unmodified	1243.6561	0.65608651	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	1	By MS/MS		By matching		3	0			2							1		1		25.77	25.093	3	0.017392	20469	160511_QHF_FH_JSI9i_3	31.068	22.339			1.2714	1.1135	64.831	2	0	Median	2.1467	1.7612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75296	0.70407	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82707000	32974000	49732000	47073000	13492000	33581000	0	0	0	35634000	19482000	16152000	0	0	0	43398	1373	40863	263803;263804	353816	353816			1	
RIGDELDSNMELQR	0	Unmodified	1674.7995	0.79953264	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	46.126	45.694	2;3	2.4697E-10	40410	160511_QHF_FH_JSI11i_3	119.87	105.51			1.1265	1.0484	12.005	3	0	Median	1.4738	1.2453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1265	1.0484	NaN	1	0	Median	0.97534	0.98833	NaN	1	0	Median	133400000	62899000	70499000	29316000	10916000	18400000	0	0	0	67502000	32515000	34988000	36579000	19469000	17111000	43399	2256	40864	263805;263806;263807;263808;263809	353817;353818;353819;353820;353821;353822	353818			6	
RIGIFGQDEDVTSK	1	Unmodified	1563.7893	0.78928553	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				49.357	47.753	3	0.01463	39119	160511_QHF_FH_JSI9i_3	41.743	36.533			5.0722	4.1627	NaN	1	1	Median	5.0722	4.1627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27494000	2673400	24821000	27494000	2673400	24821000	0	0	0	0	0	0	0	0	0	43400	1103	40865	263810	353823	353823			1	
RIGVPSATEIIK	1	Unmodified	1282.7609	0.76088593	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			53.882	52.312	2;3	1.021E-05	43800	160511_QHF_FH_JSI10i_3	81.709	70.496			0.84956	0.8244	9.2975	4	1	Median	0.96604	0.78686	8.5965	2	1	Median	0.74886	0.86852	9.378	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215210000	112040000	103170000	120470000	61139000	59332000	94743000	50905000	43839000	0	0	0	0	0	0	43401	4940	40866	263811;263812;263813;263814	353824;353825;353826;353827;353828	353825			5	
RIIDDSEITK	1	Unmodified	1188.635	0.63501672	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.05		7	5					3		3	3	5	4	29.158	26.64	2;3	2.3053E-09	21877	160511_QHF_FH_JSI10i_3	130.94	89.911			0.92058	0.90987	29.474	14	2	Median	1.1454	0.99234	23.73	3	1	Plateau	1.0501	1.2596	20.976	3	0	Median	0.88774	0.85611	9.9442	5	0	Median	0.62046	0.62956	41.831	3	1	Median	1362800000	726630000	636210000	173510000	80560000	92951000	366160000	208710000	157450000	626350000	320300000	306050000	196820000	117070000	79757000	43402	1952;3963	40867	263815;263816;263817;263818;263819;263820;263821;263822;263823;263824;263825;263826;263827;263828;263829	353829;353830;353831;353832;353833;353834;353835;353836;353837;353838;353839;353840;353841;353842;353843;353844	353834			16	
RIIGVELK	1	Unmodified	926.5913	0.59130141	5855				yes	yes	0	0	0	1		By MS/MS			3	0			1								1			31.585	30.224	2	0.02228	25061	160511_QHF_FH_JSI10i_3	44.447	1.2007	+		0.71979	0.84189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71979	0.84189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	285050000	166970000	118080000	0	0	0	285050000	166970000	118080000	0	0	0	0	0	0	43403	5855	40868	263830	353845	353845			1	
RIILEAEK	1	Unmodified	970.58113	0.58113065	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.756	22.436	2	0.018277	18117	160511_QHF_FH_JSI9i_3	64.04	25.018			0.9758	0.80555	NaN	1	1	Median	0.9758	0.80555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40904000	22759000	18146000	40904000	22759000	18146000	0	0	0	0	0	0	0	0	0	43404	2660	40869	263831	353846	353846			1	
RIILLVK	1	Unmodified	853.61131	0.61130857	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	54.445	44.612	2;3	0.0037025	24327	160513_QHF_FH_JSI10Kac_6	68.915	19.556			0.63195	0.68689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63195	0.68689	NaN	1	1	Median	22133000	11631000	10502000	0	0	0	0	0	0	0	0	0	22133000	11631000	10502000	43405	1764	40870	263832;263833;263834;263835	353847;353848;353849;353850	353849			4	
RIITYNEAMDSPDQ	0	Unmodified	1651.7512	0.75118546	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.7	2	5	3							1	3	3	3	44.568	43.844	2	3.0268E-52	38682	160511_QHF_FH_JSI11i_3	221.6	197.25			1.075	1.0137	31.363	9	4	Median	1.1905	0.99703	NaN	1	0	Median	0.96152	1.1932	29.069	3	1	Plateau	1.5393	1.4477	21.156	3	1	Plateau	1.1203	1.173	55.421	2	2	Median	438290000	201350000	236950000	73833000	31734000	42099000	102320000	60319000	41999000	180920000	69421000	111500000	81222000	39873000	41349000	43406	3264	40871	263836;263837;263838;263839;263840;263841;263842;263843;263844;263845	353851;353852;353853;353854;353855;353856;353857;353858;353859;353860;353861;353862;353863;353864;353865;353866;353867	353852			17	
RIITYNEAMDSPDQ	0	Oxidation (M)	1667.7461	0.74610008	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	1	1		By MS/MS			3	0			2								2			33.961	32.561	2	0.0048417	27161	160511_QHF_FH_JSI10i_3	59.542	44.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43407	3264	40871	263846;263847	353868;353869	353868		2236	2	
RIKEDEDDK	2	Unmodified	1146.5517	0.55168102	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			4.7412	4.253	3	0.026914	2278	160511_QHF_FH_JSI9i_3	38.021	12.082			0.94505	0.89359	30.698	2	0	Median	1.3911	1.1102	NaN	1	0	Median	0.64201	0.71923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	392080000	182370000	209710000	254700000	102380000	152320000	137380000	79988000	57393000	0	0	0	0	0	0	43408	1057	40872	263848;263849	353870	353870			1	
RILDAAGANLK	1	Unmodified	1140.6615	0.66150624	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			30.891	29.515	2	4.5774E-06	24540	160511_QHF_FH_JSI10i_3	121.83	73.547			1.1107	1.083	32.488	2	2	Median	1.0413	0.86075	NaN	1	1	Median	1.1847	1.3627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126620000	66595000	60028000	75456000	39622000	35834000	51167000	26973000	24194000	0	0	0	0	0	0	43409	5249	40873	263850;263851	353871;353872	353871			2	
RILDEIEEHNIK	1	Unmodified	1507.7995	0.79945628	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			42.815	41.267	3	6.4889E-05	34486	160511_QHF_FH_JSI10i_3	76.24	54.185			1.3436	1.5639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3436	1.5639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58442000	23842000	34600000	5080400	0	5080400	53362000	23842000	29519000	0	0	0	0	0	0	43410	2603	40874	263852;263853	353873;353874	353873			2	
RILDSNK	1	Unmodified	844.47667	0.47666558	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		6.8414	6.412	2;3	0.011803	4277	160511_QHF_FH_JSI9i_3	70.69	33.715			0.74296	0.49474	29.4	5	0	Linear	0.68831	0.56112	12.552	2	0	Median	0.7059	0.80787	10.04	2	0	Median	1.1402	1.0919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	530150000	297960000	232180000	308370000	169800000	138570000	166310000	101690000	64615000	55472000	26470000	29002000	0	0	0	43411	3914	40875	263854;263855;263856;263857;263858	353875;353876;353877;353878;353879	353876			5	
RILEDQEENPLPAALVQPHTGK	1	Unmodified	2454.2867	0.28668655	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							2	3	1		62.658	61.509	3;4	6.88E-10	51508	160511_QHF_FH_JSI10i_3	100.76	97.998			0.91411	0.93997	15.487	6	1	Median	1.3445	1.088	6.5706	2	0	Median	0.75612	0.87497	13.425	3	0	Median	1.0246	0.94092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	530320000	290260000	240060000	132650000	46487000	86161000	328140000	203590000	124550000	69529000	40184000	29344000	0	0	0	43412	677	40876	263859;263860;263861;263862;263863;263864	353880;353881;353882;353883;353884;353885;353886;353887;353888;353889;353890;353891	353882			11	
RILELDQFK	1	Unmodified	1160.6554	0.65535823	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							4	3	4	2	53.585	52.796	2;3	4.3E-06	43213	160511_QHF_FH_JSI9i_3	132.01	101.44			0.92573	0.8323	25.497	13	3	Median	1.007	0.8296	20.928	4	1	Median	0.72585	0.83329	13.963	3	0	Median	1.0714	1.0036	29.93	4	2	Median	0.65185	0.6578	7.4979	2	0	Median	4430900000	2164500000	2266400000	1551900000	700560000	851300000	1088400000	493450000	594960000	1599500000	850400000	749140000	191070000	120110000	70954000	43413	1023	40877	263865;263866;263867;263868;263869;263870;263871;263872;263873;263874;263875;263876;263877	353892;353893;353894;353895;353896;353897;353898;353899;353900;353901;353902;353903;353904;353905;353906;353907;353908;353909;353910;353911;353912;353913;353914;353915;353916;353917;353918;353919;353920;353921;353922;353923;353924;353925;353926	353910			34	
RILGLLENF	0	Unmodified	1073.6233	0.62332982	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		88.913	88.372	2	0.0027607	78561	160511_QHF_FH_JSI11i_3	63.48	63.48			0.91421	0.95291	1.2824	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8026	0.94431	NaN	1	0	Median	1.0413	0.96159	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38727000	21472000	17256000	0	0	0	17486000	10044000	7441600	21242000	11427000	9814300	0	0	0	43414	3817	40878	263878;263879	353927;353928	353927			2	
RILMEHIHK	1	Unmodified	1175.6597	0.6597321	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		43.713	43.713	4	0.00065777	38533	160511_QHF_FH_JSI11i_3	56.432	47.074			1.3243	1.2589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3243	1.2589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25227000	9800700	15426000	0	0	0	0	0	0	25227000	9800700	15426000	0	0	0	43415	2129	40879	263880	353929;353930	353929			2	
RILNFLMHPK	1	Unmodified	1267.7223	0.72233236	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			59.08	50.624	3	0.033215	28011	160513_QHF_FH_JSI10Kac_6	33.088	23.401			0.91811	1.0678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91811	1.0678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16196000	8754200	7442000	0	0	0	16196000	8754200	7442000	0	0	0	0	0	0	43416	1444	40880	263881	353931	353931			1	
RINGPFLIIVPLSTLSNWAYEFDK	1	Unmodified	2792.4901	0.49013739	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.404	93.683	3	5.6413E-09	54994	160513_QHF_FH_JSI10Kac_6	130.65	121.56			0.87354	1.0254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87354	1.0254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234610000	100360000	134260000	0	0	0	234610000	100360000	134260000	0	0	0	0	0	0	43417	1737	40881	263882	353932	353932			1	
RINMVEELEK	1	Unmodified	1259.6544	0.65437195	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.45	43.867	2	0.001488	35986	160511_QHF_FH_JSI9i_3	65.719	35.91			1.0189	1.0015	20.421	2	0	Median	1.0423	0.86685	NaN	1	0	Median	0.99591	1.1571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78554000	37639000	40915000	33317000	18230000	15087000	45237000	19409000	25828000	0	0	0	0	0	0	43418	2614	40882	263883;263884	353933;353934;353935	353935			3	
RINVELSTK	1	Unmodified	1058.6084	0.60840804	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			27.608	26.279	2;3	0.0034495	21701	160511_QHF_FH_JSI10i_3	45.598	35.226			0.67853	0.77704	23.813	3	0	Median	0.65893	0.54126	NaN	1	0	Median	0.69209	0.81184	6.1956	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	284070000	158760000	125310000	119980000	64654000	55325000	164100000	94108000	69988000	0	0	0	0	0	0	43419	4197	40883	263885;263886;263887;263888	353936;353937;353938;353939;353940;353941	353938			6	
RIPADTFAALK	1	Unmodified	1201.6819	0.68190733	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	3	2	2	51.147	50.289	2;3	1.855E-09	44139	160511_QHF_FH_JSI11i_3	136.48	113.74			0.99833	0.81022	36.987	9	1	Median	1.0759	0.86827	9.7847	2	0	Median	0.61953	0.71447	62.943	3	1	Plateau	0.76462	0.74075	10.647	2	0	Median	1.0592	1.099	23.463	2	0	Median	2018300000	1000500000	1017800000	607630000	291350000	316280000	553380000	322920000	230460000	753350000	344890000	408450000	103960000	41355000	62610000	43420	1600	40884	263889;263890;263891;263892;263893;263894;263895;263896;263897	353942;353943;353944;353945;353946;353947;353948;353949;353950;353951;353952;353953;353954;353955	353942			14	
RIPEEILGK	1	Unmodified	1053.6182	0.61824444	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	41.267	40.386	2	0.00012665	35370	160511_QHF_FH_JSI11i_3	91.584	64.982			0.92969	0.99112	22.659	6	0	Median	1.6027	1.3242	23.669	2	0	Median	0.80673	0.96461	9.2149	2	0	Median	0.98326	0.95412	NaN	1	0	Median	0.7955	0.81965	NaN	1	0	Median	1646400000	784040000	862320000	217220000	97575000	119650000	345350000	153280000	192070000	595100000	279240000	315860000	488680000	253950000	234740000	43421	1453	40885	263898;263899;263900;263901;263902;263903	353956;353957;353958;353959;353960;353961;353962;353963	353956			8	
RIPIPELEAR	0	Unmodified	1192.6928	0.69280637	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			56.802	55.254	3	0.0006046	45369	160511_QHF_FH_JSI9i_3	59.542	51.029			1.0015	0.9602	40.129	3	1	Plateau	1.2036	0.97748	NaN	1	0	Median	0.55792	0.65014	45.958	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60861000	33008000	27853000	26605000	10320000	16285000	34256000	22688000	11568000	0	0	0	0	0	0	43422	527	40886	263904;263905;263906	353964;353965;353966	353966			3	
RIPSTDANLPSGGK	1	Unmodified	1411.7419	0.7419414	5389	Q9UL26	RAB22A	Ras-related protein Rab-22A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			29.874	28.507	3	0.0035355	23097	160511_QHF_FH_JSI9i_3	43.791	31.431			0.74513	0.71623	23.756	2	1	Median	1.0469	0.84724	NaN	1	0	Median	0.53036	0.60548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60273000	36139000	24134000	36653000	19794000	16859000	23620000	16345000	7275400	0	0	0	0	0	0	43423	5389	40887	263907;263908;263909	353967;353968;353969;353970;353971	353970			5	
RIPYAPSGEIPK	1	Unmodified	1326.7296	0.7295858	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		45.214	43.948	2;3	0.00028728	35921	160511_QHF_FH_JSI9i_3	75.294	49.356			1.0197	0.94609	4.6799	5	0	Median	1.1386	0.9441	9.0063	2	0	Median	0.80899	0.95684	1.5981	2	0	Median	1.0197	0.93503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	366060000	170650000	195410000	155540000	72927000	82617000	119410000	63464000	55945000	91103000	34259000	56844000	0	0	0	43424	440	40888	263910;263911;263912;263913;263914	353972;353973;353974;353975;353976;353977	353976			6	
RIQEIIEQLDVTTSEYEK	1	Unmodified	2193.1165	0.11649291	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		8	12							13	5	2		85.69	84.8	3	1.8174E-07	70275	160511_QHF_FH_JSI10i_3	115.34	107.5			0.81115	0.71416	83.405	18	12	Median	0.87898	0.73878	84.427	12	7	Median	0.59764	0.72621	98.065	5	4	Median	0.63855	0.60872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	729150000	335730000	393420000	481520000	199030000	282490000	221580000	120930000	100660000	26048000	15768000	10280000	0	0	0	43425	980	40889	263915;263916;263917;263918;263919;263920;263921;263922;263923;263924;263925;263926;263927;263928;263929;263930;263931;263932;263933;263934	353978;353979;353980;353981;353982;353983;353984;353985;353986;353987;353988;353989;353990;353991;353992;353993;353994;353995;353996;353997;353998;353999;354000;354001	353980			24	
RIQEVGEPSK	1	Unmodified	1141.6091	0.60913632	4269	Q99442	SEC62	Translocation protein SEC62	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.507	11.815	2	0.05702	9215	160511_QHF_FH_JSI10i_3	47.198	27.411			1.7698	2.0835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7698	2.0835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15916000	6171300	9744600	0	0	0	15916000	6171300	9744600	0	0	0	0	0	0	43426	4269	40890	263935	354002	354002			1	
RIQQLTEEIGR	0	Unmodified	1341.7365	0.7364621	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			36.644	35.187	2;3	0.0021275	28674	160511_QHF_FH_JSI9i_3	57.836	49.323			0.68945	0.68474	88.464	4	4	Median	1.0742	0.90022	107.66	3	3	Median	0.4425	0.52084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91136000	48827000	42308000	75027000	38078000	36949000	16109000	10750000	5359400	0	0	0	0	0	0	43427	1016	40891	263936;263937;263938;263939;263940	354003;354004;354005;354006;354007	354007			5	
RIQSLLDIQEK	1	Unmodified	1341.7616	0.76161421	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			53.089	51.517	3	0.01308	42255	160511_QHF_FH_JSI9i_3	41.401	34.672			0.45354	0.44286	18.514	2	2	Median	0.60369	0.5048	NaN	1	1	Median	0.34073	0.38851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30224000	23173000	7051200	15939000	11096000	4843200	14285000	12077000	2207900	0	0	0	0	0	0	43428	3922	40892	263941;263942	354008;354009	354009			2	
RISATSIFFESMPYK	1	Unmodified	1775.8916	0.89164211	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	80.724	72.84	2;3	2.2927E-10	39152	160513_QHF_FH_JSI9Kac_6	141.32	97.006			1.1006	1.1503	15.987	6	0	Median	1.4362	1.2484	2.4811	2	0	Median	0.81427	0.96985	22.339	2	0	Median	1.2631	1.165	NaN	1	0	Median	0.92649	0.99254	NaN	1	0	Median	1034900000	483870000	551040000	422260000	162850000	259410000	487670000	258640000	229030000	60682000	28253000	32429000	64304000	34130000	30174000	43429	1415	40893	263943;263944;263945;263946;263947;263948	354010;354011;354012;354013;354014;354015;354016;354017;354018;354019;354020	354014			11	
RISATSIFFESMPYK	1	Oxidation (M)	1791.8866	0.88655673	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	1	1	By MS/MS			By MS/MS	16	0									2	1			1	74.913	65.899	3	0.00032517	34593	160513_QHF_FH_JSI12Kac_6	71.354	66.463			1.0112	0.96434	4.6246	2	0	Median	1.1506	0.99639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8888	0.93331	NaN	1	0	Median	105880000	62745000	43138000	67956000	42234000	25722000	0	0	0	0	0	0	37927000	20511000	17416000	43430	1415	40893	263949;263950	354021;354022	354022		1071	2	
RISEMEEELK	1	Unmodified	1262.6177	0.61765209	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.239	30.239	2	0.00052129	26185	160511_QHF_FH_JSI11i_3	88.496	63.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43431	227	40894	263951	354023	354023			1	
RISEQFTAMFR	0	Unmodified	1384.6922	0.69215444	2075;872;2477;811;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	13.8	4.84			1						5	2	3		1	66.062	58.574	2;3	9.4092E-08	32091	160513_QHF_FH_JSI10Kac_6	109.39	96.433			1.0562	1.0636	12.758	6	0	Median	1.0688	0.9205	1.1049	2	0	Median	0.89593	1.0477	7.5117	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1388	1.2371	NaN	1	0	Median	405660000	212820000	192840000	95656000	43104000	52552000	287810000	159140000	128670000	0	0	0	22190000	10578000	11612000	43432	872;2075;2477;811;2430	40895	263952;263953;263954;263955;263956;263957	354024;354025;354026;354027;354028;354029;354030	354029			7	
RISEQFTAMFR	0	Oxidation (M)	1400.6871	0.68706906	2075;872;2477;811;2430	P07437;P68371;Q13885;Q9BVA1;P04350;Q13509	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain	no	no	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	52.986	43.775	3	9.2951E-05	23209	160513_QHF_FH_JSI9Kac_6	87.777	76.406			1.0157	1.0004	12.012	3	0	Median	1.0337	0.88029	NaN	1	0	Median	0.86272	1.0004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0157	1.1191	NaN	1	0	Median	95752000	50151000	45601000	30951000	15075000	15876000	51090000	27468000	23622000	0	0	0	13711000	7607600	6103200	43433	872;2075;2477;811;2430	40895	263958;263959;263960	354031;354032;354033;354034;354035	354031		325	5	
RISGLIYEETR	0	Unmodified	1335.7147	0.71466402	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.5	6.5			3						3	2	4			44.167	39.005	3	0.0064778	20757	160513_QHF_FH_JSI9Kac_6	42.789	34.276			1.6044	1.5409	44.812	6	5	Median	1.6044	1.3593	0.49558	2	1	Median	3.7069	4.1278	49.084	4	4	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151800000	62495000	89309000	46136000	18765000	27371000	105670000	43730000	61938000	0	0	0	0	0	0	43434	2019	40896	263961;263962;263963;263964;263965;263966	354036;354037;354038;354039;354040;354041	354039			6	
RISLEQNESQTFK	1	Unmodified	1578.8002	0.80018457	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.628	34.185	3	0.0052987	27888	160511_QHF_FH_JSI9i_3	44.44	24.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43435	4659	40897	263967	354042	354042			1	
RISPVEESEDVSNK	1	Unmodified	1587.774	0.77402939	1374	P31431	SDC4	Syndecan-4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.014	23.739	3	2.9473E-05	19596	160511_QHF_FH_JSI10i_3	102.63	97.829			0.9889	1.1411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9889	1.1411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33409000	19661000	13747000	0	0	0	33409000	19661000	13747000	0	0	0	0	0	0	43436	1374	40898	263968	354043	354043			1	
RITADQALK	1	Unmodified	1014.5822	0.58219329	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		15.712	15.196	2;3	7.1675E-05	12172	160511_QHF_FH_JSI9i_3	96.331	54.222			0.73435	0.73327	24.613	4	2	Median	0.97574	0.79359	NaN	1	0	Median	0.75646	0.87581	NaN	1	0	Median	0.61038	0.58133	21.657	2	2	Median	NaN	NaN	NaN	0	0	Median	229280000	128140000	101140000	62894000	28632000	34262000	42269000	19712000	22557000	124110000	79795000	44317000	0	0	0	43437	2439	40899	263969;263970;263971;263972	354044;354045;354046;354047	354047			4	
RITEAEK	1	Unmodified	845.46068	0.46068117	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		5	7						2	3	4	4	3	5.1778	3.7399	2;3	0.00099552	2702	160511_QHF_FH_JSI11i_3	95.531	56.739			0.75419	0.76838	44.474	14	2	Median	0.78674	0.65911	69.145	3	1	Plateau	0.63867	0.78353	41.985	4	1	Median	0.80359	0.76838	30.628	4	0	Median	0.67008	0.69176	7.0478	3	0	Plateau	8810100000	4975700000	3834400000	1601200000	729750000	871500000	2936500000	1707600000	1228900000	3896500000	2316200000	1580300000	375960000	222230000	153730000	43438	1073	40900	263973;263974;263975;263976;263977;263978;263979;263980;263981;263982;263983;263984;263985;263986	354048;354049;354050;354051;354052;354053;354054;354055;354056;354057;354058;354059;354060;354061;354062;354063	354049			15	
RITQETFDAVLQEK	1	Unmodified	1676.8733	0.87334951	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			59.714	58.185	3	0.017359	48676	160511_QHF_FH_JSI10i_3	33.547	26.818			0.53536	0.60351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53536	0.60351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19965000	11652000	8313500	0	0	0	19965000	11652000	8313500	0	0	0	0	0	0	43439	3436	40901	263987	354064	354064			1	
RITSPLMEPSSIEK	1	Unmodified	1586.8338	0.83379288	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							4	4	2	1	49.985	49.023	2;3	5.132E-05	40327	160511_QHF_FH_JSI9i_3	139.89	114.67			0.92859	0.8525	12.199	11	0	Median	1.0416	0.85608	4.7638	4	0	Median	0.70279	0.80587	3.1998	4	0	Linear	0.89085	0.85372	7.3387	2	0	Median	1.2034	1.2442	NaN	1	0	Median	2832900000	1486200000	1346700000	1275200000	570070000	705160000	905010000	544690000	360320000	593160000	336970000	256200000	59533000	34513000	25020000	43440	1300	40902	263988;263989;263990;263991;263992;263993;263994;263995;263996;263997;263998	354065;354066;354067;354068;354069;354070;354071;354072;354073;354074;354075;354076;354077;354078;354079;354080;354081;354082;354083;354084;354085;354086;354087;354088;354089;354090;354091;354092	354085			28	
RITSPLMEPSSIEK	1	Oxidation (M)	1602.8287	0.8287075	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		5.4	5.31		1	3						1	3	1	1		42.641	41.6	3	6.4131E-05	34224	160511_QHF_FH_JSI9i_3	91.076	78.931			1.0212	0.89906	14.739	4	1	Median	1.1791	0.98125	20.817	2	1	Median	0.72939	0.82136	NaN	1	0	Median	0.99697	0.9544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	379860000	173200000	206660000	211490000	90895000	120590000	106750000	50378000	56369000	61627000	31923000	29704000	0	0	0	43441	1300	40902	263999;264000;264001;264002;264003	354093;354094;354095;354096;354097;354098;354099;354100;354101;354102	354099		950	9	
RIVDGKVVSETNDTK	2	Acetyl (K)	1701.8897	0.88972785	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	36.638	27.03	3	0.0019035	15698	160513_QHF_FH_JSI11Kac_5	69.331	57.045			0.36856	0.36066	72.027	5	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4176	1.6984	5.5745	2	0	Median	0.36856	0.36066	NaN	1	0	Median	0.49503	0.54188	3.5142	2	0	Median	45638000	28576000	17062000	0	0	0	13518000	5942300	7575500	13525000	9734800	3790500	18595000	12899000	5696400	43442	842	40903	264004;264005;264006;264007;264008	354103;354104;354105;354106	354105	498;499		4	
RIVEDPESLNMK	1	Unmodified	1429.7235	0.72351415	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		37.596	37.596	2;3	0.0092283	33231	160511_QHF_FH_JSI10i_2	41.401	34.513			1.2869	1.2155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2869	1.2155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22591000	9508500	13082000	0	0	0	0	0	0	22591000	9508500	13082000	0	0	0	43443	5138	40904	264009;264010	354107;354108	354108			2	
RIVEGILK	1	Unmodified	926.5913	0.59130141	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	3	1	30.67	29.972	2;3	0.00075145	24540	160511_QHF_FH_JSI9i_3	68.224	36.289			0.83558	0.79812	59.007	8	3	Median	0.83558	0.66644	8.0928	2	0	Median	1.01	1.1557	44.808	2	1	Median	0.39086	0.37355	97.387	3	2	Plateau	0.74147	0.75663	NaN	1	0	Median	1763000000	967900000	795140000	721970000	384850000	337120000	421370000	237140000	184230000	593770000	330560000	263210000	25925000	15338000	10588000	43444	2659	40905	264011;264012;264013;264014;264015;264016;264017;264018	354109;354110;354111;354112;354113;354114;354115;354116;354117;354118;354119	354118			11	
RIVEQDTMPPK	1	Unmodified	1312.6809	0.68092105	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		21.6	20.396	2;3	0.0029462	17256	160511_QHF_FH_JSI11i_3	48.513	34.068			1.5796	1.9134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5796	1.9134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5606100	3419600	2186600	0	0	0	5606100	3419600	2186600	0	0	0	0	0	0	43445	154	40906	264019;264020	354120;354121	354120			2	
RIVGVDGAIK	1	Unmodified	1026.6186	0.61857879	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.652	28.272	2	0.020463	23065	160511_QHF_FH_JSI9i_3	56.729	3.5629			1.2607	1.0734	NaN	1	1	Median	1.2607	1.0734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9820000	4082600	5737400	9820000	4082600	5737400	0	0	0	0	0	0	0	0	0	43446	5409	40907	264021	354122	354122			1	
RIVLVDDSIVR	0	Unmodified	1283.7561	0.75613491	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			55.902	54.346	3	0.0021107	44615	160511_QHF_FH_JSI9i_3	49.423	45.34			1.145	1.1081	19.749	2	0	Median	1.1698	0.96371	NaN	1	0	Median	1.1208	1.2742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42194000	18817000	23377000	28714000	13799000	14915000	13480000	5018400	8461900	0	0	0	0	0	0	43447	2241	40908	264022;264023	354123;354124	354124			2	
RKAEEDAALQAK	2	Unmodified	1328.7048	0.70482762	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		8.5724	8.1916	3	1.6376E-05	5722	160511_QHF_FH_JSI11i_3	115.8	87.943			0.73114	0.78132	23.947	3	0	Plateau	1.4289	1.1901	NaN	1	0	Median	0.67153	0.78132	NaN	1	0	Median	0.8526	0.79102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	309810000	147850000	161970000	73554000	29040000	44514000	120730000	66730000	54001000	115530000	52079000	63449000	0	0	0	43448	2409	40909	264024;264025;264026	354125;354126;354127;354128;354129	354125			5	
RKEELAEALK	2	Unmodified	1185.6717	0.67173657	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		18.027	18.027	3	0.0012362	14982	160511_QHF_FH_JSI11i_3	68.536	41.207			0.87674	0.82655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87674	0.82655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162270000	84962000	77310000	0	0	0	0	0	0	162270000	84962000	77310000	0	0	0	43449	1409	40910	264027	354130	354130			1	
RKEEPPQPQLANGALK	2	Unmodified	1774.969	0.96898123	4454	Q9BUV8	C20orf24	Uncharacterized protein C20orf24	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			30.33	28.954	3	5.5045E-05	23689	160511_QHF_FH_JSI9i_3	101.39	92.289			1.2399	0.96399	8.489	3	2	Plateau	1.1595	0.96399	9.7643	2	2	Median	0.76013	0.88495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172900000	83569000	89335000	144700000	69045000	75651000	28209000	14524000	13684000	0	0	0	0	0	0	43450	4454	40911	264028;264029;264030	354131;354132;354133;354134;354135;354136	354134			6	
RKGDEVDGVDEVAK	2	Unmodified	1515.7529	0.75290002	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.56	0.497		4	5							3	4	2		18.724	17.971	2;3	1.0058E-09	14503	160511_QHF_FH_JSI11i_3	132.44	118.72			0.86078	0.84505	12.56	9	0	Median	1.1018	0.96423	11.954	3	0	Median	0.73572	0.84359	11.258	4	0	Median	0.86865	0.79945	1.6767	2	0	Median	NaN	NaN	NaN	0	0	Median	1100400000	548370000	552010000	201120000	100140000	100990000	461600000	241480000	220110000	437670000	206760000	230910000	0	0	0	43451	939	40912	264031;264032;264033;264034;264035;264036;264037;264038;264039	354137;354138;354139;354140;354141;354142;354143;354144;354145;354146;354147;354148	354138			11	
RKGEMETESQPK	2	Unmodified	1418.6824	0.68237762	3253	Q7Z309	FAM122B	Protein FAM122B	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.6661	5.1431	3	7.529E-05	3143	160511_QHF_FH_JSI9i_3	136.99	114.76			1.1936	0.96201	NaN	1	1	Median	1.1936	0.96201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124490000	59448000	65041000	124490000	59448000	65041000	0	0	0	0	0	0	0	0	0	43452	3253	40913	264040	354149	354149			1	
RKLDDASK	2	Unmodified	931.50869	0.50869399	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				3.8635	3.3829	3	0.050769	1785	160511_QHF_FH_JSI9i_3	42.311	29.334			5.6283	4.6484	NaN	1	1	Median	5.6283	4.6484	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41038000	5739200	35299000	41038000	5739200	35299000	0	0	0	0	0	0	0	0	0	43453	636	40914	264041	354150	354150			1	
RKMDETDASSAVK	2	Unmodified	1436.6929	0.6929423	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		10.586	10.138	2;3	1.1896E-06	7717	160511_QHF_FH_JSI11i_3	128.22	105.5			0.74782	0.73534	17.565	6	0	Median	1.23	1.0029	6.5248	2	0	Median	0.62789	0.73534	0.49113	2	0	Median	0.74782	0.70385	3.0223	2	0	Median	NaN	NaN	NaN	0	0	Median	694760000	338300000	356460000	226860000	94591000	132270000	244370000	126030000	118340000	223530000	117680000	105850000	0	0	0	43454	2360	40915	264042;264043;264044;264045;264046;264047	354151;354152;354153;354154;354155;354156;354157;354158	354152			8	
RKMDETDASSAVK	2	Oxidation (M)	1452.6879	0.68785692	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	1	2	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		6.2839	5.9442	3	0.0090953	3927	160511_QHF_FH_JSI9i_3	53.3	34.242			1.1133	1.0162	16.058	3	0	Median	1.2541	1.0162	NaN	1	0	Median	0.67558	0.78413	NaN	1	0	Median	1.1133	1.052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152020000	73619000	78406000	65081000	26140000	38940000	45313000	25871000	19442000	41631000	21608000	20023000	0	0	0	43455	2360	40915	264048;264049;264050	354159	354159		1927	1	
RKPDTIEVQQMK	2	Oxidation (M)	1487.7766	0.77661235	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	1	2	By MS/MS	By MS/MS	By MS/MS		3	0			12							4	5	3		19.284	18.436	3	0.00012481	16549	160511_QHF_FH_JSI9i_3	93.649	74.438			0.72229	0.73049	121.81	12	1	Median	0.69726	0.55949	115.93	4	0	Median	0.60649	0.68899	153.44	5	1	Median	0.9609	0.88216	115.86	3	0	Median	NaN	NaN	NaN	0	0	Median	2263900000	1148700000	1115200000	1078100000	516970000	561170000	568710000	334500000	234210000	617010000	297230000	319780000	0	0	0	43456	1073;1426;1270	40916	264051;264052;264053;264054;264055;264056;264057;264058;264059;264060;264061;264062	354160;354161;354162;354163;354164;354165;354166;354167;354168;354169;354170;354171;354172;354173;354174;354175	354173		719	16	
RKPDTIEVQQMK	2	Unmodified	1471.7817	0.78169773	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.87	0.34		2	13							7	5	3		21.75	20.799	2;3;4	5.5308E-08	16986	160511_QHF_FH_JSI11i_3	139.46	116.58			0.77952	0.66176	71.642	15	6	Median	0.74781	0.65036	52.232	7	4	Median	0.5134	0.58922	100.54	5	2	Median	0.77952	0.73805	18.264	3	0	Plateau	NaN	NaN	NaN	0	0	Median	5494400000	2914700000	2579700000	2468600000	1470700000	997860000	1583500000	706170000	877300000	1442400000	737820000	704540000	0	0	0	43457	1073;1426;1270	40916	264063;264064;264065;264066;264067;264068;264069;264070;264071;264072;264073;264074;264075;264076;264077	354176;354177;354178;354179;354180;354181;354182;354183;354184;354185;354186;354187;354188;354189;354190;354191;354192;354193;354194	354177			16	
RKPDTIEVQQMK	2	Acetyl (K)	1513.7923	0.79226242	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1		1	2	1	44.542	34.409	3	8.6012E-05	19476	160513_QHF_FH_JSI11Kac_5	90.731	63.633			0.54444	0.59235	69.858	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90864	1.1053	NaN	1	0	Median	0.27562	0.27405	NaN	1	0	Median	0.54444	0.59235	NaN	1	0	Median	29018000	19922000	9095600	0	0	0	6650100	3541300	3108800	19097000	14183000	4913100	3271200	2197500	1073700	43458	1073;1426;1270	40916	264078;264079;264080;264081	354195;354196;354197;354198;354199;354200	354196	917		6	
RKPDTIEVQQMK	2	Acetyl (K);Oxidation (M)	1529.7872	0.78717704	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	1	0	1	2		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	32.811	23.333	3	0.013599	13852	160513_QHF_FH_JSI11Kac_5	46.069	37.892			0.32214	0.31542	64.663	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.1255	1.3206	12.938	2	0	Median	0.35637	0.35122	NaN	1	0	Median	0.58314	0.62824	NaN	1	0	Median	24201000	17173000	7027300	0	0	0	5516500	3232300	2284200	14911000	11489000	3422400	3773100	2452300	1320800	43459	1073;1426;1270	40916	264082;264083;264084;264085	354201	354201	917	719	1	
RKPDYEPVENTDEAQK	2	Unmodified	1917.9068	0.90683448	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				18.414	17.253	3	0.00027159	13717	160511_QHF_FH_JSI9i_3	76.151	65.492			1.0726	0.87033	NaN	1	0	Median	1.0726	0.87033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26218000	13193000	13025000	26218000	13193000	13025000	0	0	0	0	0	0	0	0	0	43460	4881	40917	264086	354202;354203	354203			2	
RKPEDVLDDDDAGSAPLK	2	Unmodified	1939.9487	0.9486993	1441	P35613	BSG	Basigin	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			4								2	2		40.117	39.61	3	2.9041E-08	34470	160511_QHF_FH_JSI11i_3	108.17	82.851			0.64108	0.51706	31.646	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.44073	0.51706	NaN	1	1	Median	0.64108	0.6034	42.941	2	0	Median	NaN	NaN	NaN	0	0	Median	90450000	55723000	34727000	0	0	0	9380800	7498100	1882700	81069000	48225000	32845000	0	0	0	43461	1441	40918	264087;264088;264089;264090	354204;354205;354206;354207;354208	354205			5	
RKQEEELTK	2	Unmodified	1159.6197	0.619701	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		5.4791	5.1394	3	0.00086732	3070	160511_QHF_FH_JSI9i_3	75.819	41.859			0.68097	0.60799	13.276	3	0	Plateau	0.68097	0.54593	NaN	1	0	Median	0.59824	0.67711	NaN	1	0	Median	0.74699	0.69552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	429480000	201900000	227580000	235130000	79607000	155520000	144960000	94332000	50627000	49396000	27963000	21433000	0	0	0	43462	3848	40919	264091;264092;264093	354209;354210;354211;354212	354211			4	
RKQEEQMETEQQNK	2	Unmodified	1804.8374	0.83737471	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.8048	5.2819	3	0.00016299	3269	160511_QHF_FH_JSI9i_3	87.447	68.372			1.0083	0.82455	NaN	1	0	Median	1.0083	0.82455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42928000	18947000	23981000	42928000	18947000	23981000	0	0	0	0	0	0	0	0	0	43463	532	40920	264094	354213;354214	354214			2	
RKYDTPK	2	Acetyl (K)	948.50288	0.50288033	1560	P43308	SSR2	Translocon-associated protein subunit beta	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		10.054	0.70663	3	0.038124	3563	160513_QHF_FH_JSI11Kac_6	60.436	34.7			0.26748	0.26115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26748	0.26115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21198000	17235000	3963000	0	0	0	0	0	0	21198000	17235000	3963000	0	0	0	43464	1560	40921	264095	354215	354215			1	
RLAAEVTK	1	Unmodified	886.52362	0.52361577	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		10.97	10.521	2	0.0073966	8008	160511_QHF_FH_JSI9i_3	60.019	18.59			1.1853	1.1822	17.298	3	0	Median	1.1853	0.95532	NaN	1	0	Median	1.1289	1.3456	NaN	1	0	Median	1.2383	1.1822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299070000	124180000	174900000	145110000	54664000	90450000	92563000	38747000	53815000	61397000	30765000	30632000	0	0	0	43465	5549	40922	264096;264097;264098	354216;354217;354218;354219	354218			4	
RLAEALPK	1	Unmodified	896.54435	0.54435122	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			20.816	19.672	2;3	0.0059299	16177	160511_QHF_FH_JSI10i_3	51.346	24.092			1.316	1.1011	43.688	4	4	Median	1.5528	1.2451	26.971	3	3	Median	0.50959	0.59467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	646040000	387030000	259010000	409870000	205100000	204770000	236170000	181930000	54244000	0	0	0	0	0	0	43466	1172	40923	264099;264100;264101;264102	354220;354221;354222;354223	354220			4	
RLAENSASSDDLLVAEVGISDYGDK	1	Unmodified	2623.2613	0.26131924	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	77.14	76.636	3	1.2799E-05	68292	160511_QHF_FH_JSI10i_2	54.744	47.383			0.5734	0.62559	9.6992	2	1	Median	NaN	NaN	NaN	0	0	Median	0.55735	0.67	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58991	0.58412	NaN	1	0	Median	52351000	31949000	20402000	0	0	0	25533000	15578000	9954900	0	0	0	26818000	16371000	10448000	43467	1332	40924	264103;264104	354224;354225	354224			2	
RLAETQEEISAEVAAK	1	Unmodified	1743.9003	0.90029254	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	3	2	1	41.823	40.955	2;3	1.1973E-10	35773	160511_QHF_FH_JSI9i_2	121.82	106.89			1.0482	0.98479	29.739	8	1	Median	1.0191	0.87155	22.388	2	0	Median	0.70104	0.86827	38.181	3	1	Plateau	1.0482	0.97867	1.1005	2	0	Median	1.4042	1.6007	NaN	1	0	Median	540710000	251870000	288830000	110990000	53840000	57152000	170300000	76347000	93954000	223520000	104220000	119300000	35891000	17467000	18424000	43468	5562	40925	264105;264106;264107;264108;264109;264110;264111;264112	354226;354227;354228;354229;354230;354231;354232;354233;354234;354235;354236;354237	354232			12	
RLAPEYEAAATR	0	Unmodified	1346.6943	0.69426293	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.86		8	9					1	5	7	7	5	4	25.882	23.02	2;3	4.2734E-08	18547	160511_QHF_FH_JSI9i_3	114.02	95.273			0.94053	0.96728	13.907	23	2	Median	1.2631	1.0826	14.924	7	1	Median	0.81675	0.95172	8.5346	7	1	Median	0.97713	0.91063	11.716	5	0	Linear	0.89483	0.93718	24.858	4	0	Median	6877600000	3500900000	3376700000	2598200000	1174300000	1423900000	3442300000	1918100000	1524200000	713850000	348670000	365180000	123300000	59855000	63447000	43469	1344	40926	264113;264114;264115;264116;264117;264118;264119;264120;264121;264122;264123;264124;264125;264126;264127;264128;264129;264130;264131;264132;264133;264134;264135	354238;354239;354240;354241;354242;354243;354244;354245;354246;354247;354248;354249;354250;354251;354252;354253;354254;354255;354256;354257;354258;354259;354260;354261;354262;354263;354264;354265;354266;354267;354268;354269;354270;354271;354272;354273	354251			35	
RLAPITSDPTEATAVGAVEASFK	1	Unmodified	2330.2118	0.21179027	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.71	0.452		2	5							2	2	2	1	82.404	81.724	2;3	2.622E-25	68456	160511_QHF_FH_JSI10i_3	168.75	160.36			0.88916	0.90633	9.314	6	0	Median	1.1824	0.97493	12.771	2	0	Median	0.80375	0.97112	7.3113	2	0	Median	0.92091	0.84769	NaN	1	0	Median	0.8585	0.86658	NaN	1	0	Median	1151100000	614820000	536270000	283760000	124540000	159210000	450180000	252550000	197630000	361950000	212450000	149510000	55200000	25280000	29919000	43470	1055	40927	264136;264137;264138;264139;264140;264141;264142	354274;354275;354276;354277;354278;354279;354280;354281;354282;354283;354284;354285;354286;354287	354279			14	
RLASTSDIEEK	1	Unmodified	1247.6357	0.635745	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							4	2	3		17.109	16.442	2;3	1.1922E-05	13355	160511_QHF_FH_JSI10i_3	91.961	82.074			0.90241	0.9135	32.388	9	4	Median	1.0701	0.9042	35.67	4	2	Median	0.75698	0.90065	2.0046	2	0	Median	1.1492	1.0933	40.414	3	2	Median	NaN	NaN	NaN	0	0	Median	352560000	177030000	175530000	126960000	55706000	71252000	133690000	74834000	58855000	91914000	46493000	45422000	0	0	0	43471	227	40928	264143;264144;264145;264146;264147;264148;264149;264150;264151	354288;354289;354290;354291;354292;354293;354294;354295;354296;354297;354298;354299;354300	354295			13	
RLAYAIIQFLHDQLR	0	Unmodified	1856.0421	0.042086592	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			87.063	79.894	3;4	0.0013909	43925	160513_QHF_FH_JSI9Kac_6	64.52	46.156			1.9361	1.9292	114.93	2	2	Median	1.0066	0.85591	NaN	1	1	Median	3.7237	4.3485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269090000	103990000	165100000	94186000	45107000	49079000	174900000	58882000	116020000	0	0	0	0	0	0	43472	372	40929	264152;264153	354301;354302	354301			2	
RLDDSLLYLR	0	Unmodified	1262.6983	0.69828568	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	63.527	63.004	2;3	7.0038E-06	55655	160511_QHF_FH_JSI11i_3	82.261	37.836			1.1986	1.1631	20.913	8	0	Median	1.4367	1.2366	NaN	1	0	Median	0.73336	0.90082	NaN	1	0	Median	1.3067	1.2415	14.709	3	0	Plateau	1.3257	1.3353	32.384	3	0	Plateau	424850000	193750000	231100000	19920000	8103500	11816000	34650000	22540000	12111000	173660000	79611000	94048000	196620000	83497000	113130000	43473	1656	40930	264154;264155;264156;264157;264158;264159;264160;264161	354303;354304;354305;354306;354307;354308;354309;354310;354311;354312;354313;354314	354304			12	
RLDDVSNDVR	0	Unmodified	1187.5895	0.58946351	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	17.756	17.795	3	0.0087176	14332	160511_QHF_FH_JSI12i_3	31.478	25.443			0.84765	0.87946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84765	0.87946	NaN	1	0	Median	38776000	19891000	18885000	0	0	0	0	0	0	0	0	0	38776000	19891000	18885000	43474	3382	40931	264162;264163	354315;354316	354316			2	
RLDEELEDAEK	1	Unmodified	1345.6361	0.63613893	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.747	5	7	4							2	3	5	6	31.605	31.123	2;3	2.059E-18	27302	160511_QHF_FH_JSI10i_2	167.3	120.41			0.84009	0.89546	27.084	13	6	Median	1.1656	1.0197	15.227	2	0	Median	0.82859	1.0314	22.753	3	2	Median	0.74674	0.75476	41.893	4	3	Median	0.83255	0.89438	25.211	4	1	Median	1670100000	858100000	811980000	262250000	125700000	136560000	327750000	172490000	155260000	501500000	256870000	244630000	578570000	303040000	275540000	43475	2598	40932	264164;264165;264166;264167;264168;264169;264170;264171;264172;264173;264174;264175;264176;264177;264178;264179	354317;354318;354319;354320;354321;354322;354323;354324;354325;354326;354327;354328;354329;354330;354331;354332;354333;354334;354335	354332			18	
RLDEVSR	0	Unmodified	873.46683	0.46682918	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	1	By matching	By MS/MS		By matching	2.33	0.471		2	1							1	1		1	8.1545	7.8701	2	0.01438	5942	160511_QHF_FH_JSI10i_2	66.692	22.884			0.84071	0.95841	16.232	3	0	Median	0.83693	0.75257	NaN	1	0	Median	0.84071	1.0246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94253	0.95841	NaN	1	0	Median	168830000	92197000	76637000	46839000	28126000	18713000	85266000	48181000	37085000	0	0	0	36729000	15889000	20840000	43476	5213	40933	264180;264181;264182	354336	354336			1	
RLDEYTQEEIDAFPR	0	Unmodified	1880.8905	0.89045614	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	61.689	61.414	2;3	0.00028098	52940	160511_QHF_FH_JSI12i_3	76.82	70.788			1.212	1.2477	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.212	1.2477	NaN	1	1	Median	64534000	25907000	38627000	0	0	0	0	0	0	0	0	0	64534000	25907000	38627000	43477	4543	40934	264183;264184	354337;354338	354337			2	
RLDFDYK	1	Unmodified	955.47633	0.47633123	4331;4332	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	no	no	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	33.808	33.753	3	0.022349	29328	160511_QHF_FH_JSI11i_3	32.355	23.141			0.82038	0.81428	26.406	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0445	0.98144	NaN	1	0	Median	0.64436	0.67559	NaN	1	0	Median	136460000	74319000	62142000	0	0	0	0	0	0	66163000	33009000	33154000	70298000	41310000	28988000	43478	4331;4332	40935	264185;264186	354339	354339			1	
RLDFDYKK	2	Acetyl (K)	1125.5819	0.58185894	4331;4332	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	no	no	1	0	0	2			By MS/MS		16	0									1			1		49.379	39.677	3	0.044699	21559	160513_QHF_FH_JSI11Kac_6	45.161	41.574			0.44374	0.44617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44374	0.44617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7207800	5015700	2192100	0	0	0	0	0	0	7207800	5015700	2192100	0	0	0	43479	4331;4332	40936	264187	354340	354340			0	
RLDHDLK	1	Unmodified	895.48756	0.48756462	3399	Q8IUR7	ARMC8	Armadillo repeat-containing protein 8	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		40.282	39.823	3	0.064249	34009	160511_QHF_FH_JSI11i_2	12.356	1.4829			0.99328	0.97509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99328	0.97509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18002000	7858900	10143000	0	0	0	0	0	0	18002000	7858900	10143000	0	0	0	43480	3399	40937	264188	354341	354341			1	
RLDINTNTYTSQDLK	1	Unmodified	1780.8955	0.89554151	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	47.01	46.889	3	1.6236E-05	41349	160511_QHF_FH_JSI11i_3	92.575	82.518			0.86523	0.85188	5.0756	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88327	0.82185	NaN	1	0	Median	0.84756	0.88301	NaN	1	0	Median	138410000	65013000	73395000	0	0	0	0	0	0	98011000	46414000	51597000	40397000	18599000	21798000	43481	4651	40938	264189;264190	354342;354343;354344;354345	354342			4	
RLDIQEALK	1	Unmodified	1084.6241	0.6240581	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		42.881	42.881	2	0.0018628	37795	160511_QHF_FH_JSI11i_3	81.972	33.689			0.60576	0.56691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60576	0.56691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35657000	23321000	12336000	0	0	0	0	0	0	35657000	23321000	12336000	0	0	0	43482	4093	40939	264191	354346	354346			1	
RLDLAGPLLAFLFR	0	Unmodified	1600.9453	0.94533266	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			98.291	92.57	2;3	3.5642E-17	54082	160513_QHF_FH_JSI10Kac_6	138.21	125.83			0.81968	0.98332	15.783	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81968	0.98332	15.783	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	405070000	227240000	177830000	0	0	0	405070000	227240000	177830000	0	0	0	0	0	0	43483	1366	40940	264192;264193	354347;354348;354349	354348			3	
RLDLDAAK	1	Unmodified	900.50288	0.50288033	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	20.87	20.87	2	0.005179	17546	160511_QHF_FH_JSI11i_3	66.692	27.9			0.89655	0.87559	18.643	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82093	0.76745	NaN	1	0	Median	0.97914	0.99897	NaN	1	0	Median	220390000	114670000	105720000	0	0	0	0	0	0	110610000	66100000	44509000	109780000	48570000	61209000	43484	5559	40941	264194;264195	354350;354351;354352;354353	354350			4	
RLDLPIER	0	Unmodified	1010.5873	0.58727866	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							2	4	1		45.33	44.146	2;3	0.0035863	36243	160511_QHF_FH_JSI9i_3	51.066	40.201			0.80577	0.941	13.592	7	3	Median	1.2737	1.0639	4.6703	2	0	Median	0.78466	0.93248	11.821	4	2	Median	0.84446	0.7965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	414040000	222790000	191250000	125960000	58613000	67343000	268630000	155380000	113250000	19453000	8796400	10657000	0	0	0	43485	1126	40942	264196;264197;264198;264199;264200;264201;264202	354354;354355;354356;354357;354358;354359;354360;354361;354362;354363;354364	354360			11	
RLDLVHTAALMLDK	1	Unmodified	1594.8865	0.88649715	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			10							4	3	3		87.889	87.137	3;4	3.3063E-05	72849	160511_QHF_FH_JSI10i_3	98.694	85.281			0.72134	0.81711	58.055	9	5	Median	0.71165	0.60785	52.472	4	2	Median	0.6704	0.76347	11.961	2	0	Median	1.6769	1.5574	57.936	3	3	Median	NaN	NaN	NaN	0	0	Median	194140000	103640000	90504000	71120000	42982000	28138000	50934000	30833000	20101000	72090000	29826000	42265000	0	0	0	43486	552	40943	264203;264204;264205;264206;264207;264208;264209;264210;264211;264212	354365;354366;354367;354368;354369;354370;354371;354372;354373;354374;354375;354376;354377;354378;354379	354370			15	
RLDQELDFILSQQK	1	Unmodified	1731.9155	0.91554867	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	81.856	81.356	2;3	4.033E-05	70541	160511_QHF_FH_JSI12i_3	140.31	90.814			1.2496	1.2125	17.68	7	2	Median	1.4543	1.2125	NaN	1	0	Median	0.98004	1.1999	NaN	1	0	Median	1.2351	1.2366	6.3685	2	2	Median	1.7021	1.6742	30.144	3	0	Plateau	687930000	300230000	387700000	68281000	31276000	37005000	129190000	77265000	51927000	61785000	27377000	34408000	428670000	164310000	264360000	43487	1467	40944	264213;264214;264215;264216;264217;264218;264219	354380;354381;354382;354383;354384;354385;354386;354387;354388	354388			9	
RLDVFEK	1	Unmodified	905.49707	0.49706667	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.88	0.331		1	7							3	3	2		32.013	31.011	2;3	0.0087333	25454	160511_QHF_FH_JSI9i_3	49.442	33.239			1.1551	1.0449	32.065	8	4	Median	1.2433	0.997	30.539	3	1	Median	1.2138	1.419	20.667	3	2	Median	0.84492	0.80797	38.069	2	1	Median	NaN	NaN	NaN	0	0	Median	1857200000	924110000	933140000	384650000	157790000	226860000	685950000	297200000	388740000	786660000	469120000	317540000	0	0	0	43488	4272	40945	264220;264221;264222;264223;264224;264225;264226;264227	354389;354390;354391;354392;354393;354394;354395;354396;354397;354398;354399;354400	354399			12	
RLDYITAEIK	1	Unmodified	1220.6765	0.6764876	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	49.973	49.385	2;3	0.00013171	43683	160511_QHF_FH_JSI10i_2	62.408	43.165			0.84835	0.90803	51.692	10	6	Median	0.85321	0.71747	NaN	1	0	Median	0.80985	0.98972	14.448	2	0	Median	1.0026	0.9631	68.235	4	4	Median	0.84352	0.92269	65.557	3	2	Median	1212800000	594780000	617980000	50184000	29015000	21169000	187460000	95674000	91782000	481230000	233920000	247310000	493890000	236170000	257720000	43489	263	40946	264228;264229;264230;264231;264232;264233;264234;264235;264236;264237	354401;354402;354403;354404;354405;354406;354407;354408;354409	354407			9	
RLEAAYLDLQR	0	Unmodified	1346.7306	0.73064844	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.48		5	7						7	5	6	5	3	52.63	48.657	2;3	6.946E-13	40840	160511_QHF_FH_JSI10i_3	143.79	105.5			0.90401	1.0191	22.259	19	1	Median	1.5253	1.3202	19.218	5	0	Median	0.87764	1.0443	6.5734	6	0	Median	0.78146	0.78255	13.379	5	1	Median	0.83394	0.8432	29.729	3	0	Median	2550200000	1285400000	1264800000	644390000	256590000	387810000	1157800000	634840000	522980000	492180000	258050000	234140000	255760000	135900000	119860000	43490	505	40947	264238;264239;264240;264241;264242;264243;264244;264245;264246;264247;264248;264249;264250;264251;264252;264253;264254;264255;264256	354410;354411;354412;354413;354414;354415;354416;354417;354418;354419;354420;354421;354422;354423;354424;354425;354426;354427;354428;354429;354430;354431;354432;354433;354434	354412			24	
RLEAEQAR	0	Unmodified	971.51484	0.514842	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.33	0.471		4	2							2	3	1		5.6677	5.2636	2;3	0.008081	3565	160511_QHF_FH_JSI10i_2	57.96	23.152			1.1482	1.0533	18.724	6	1	Median	1.2495	1.0526	9.8312	2	1	Median	1.1706	1.3523	27.269	3	0	Plateau	0.98676	0.98327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	487130000	243300000	243820000	125520000	57077000	68448000	301070000	155870000	145200000	60534000	30360000	30174000	0	0	0	43491	2521	40948	264257;264258;264259;264260;264261;264262	354435;354436;354437;354438;354439	354439			5	
RLEAFEHPNVVR	0	Unmodified	1465.779	0.77899561	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.843	35.386	3	0.0023387	28824	160511_QHF_FH_JSI9i_3	48.115	42.612			1.4097	1.1431	NaN	1	0	Median	1.4097	1.1431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29488000	12114000	17374000	29488000	12114000	17374000	0	0	0	0	0	0	0	0	0	43492	1007	40949	264263	354440	354440			1	
RLEAFLTQK	1	Unmodified	1104.6291	0.62914348	2191;1453	Q02750;P36507	MAP2K1;MAP2K2	Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	3	1	39.146	38.293	2;3	3.4846E-08	31402	160511_QHF_FH_JSI9i_3	147.75	91.743			0.91645	0.81598	32.341	9	5	Median	1.0138	0.82677	1.8583	2	0	Median	0.6574	0.7717	48.765	3	2	Median	1.1755	1.1167	23.477	3	2	Plateau	0.46708	0.53862	NaN	1	1	Median	2140600000	1125100000	1015500000	570600000	268480000	302120000	631690000	380780000	250910000	866240000	424020000	442220000	72044000	51832000	20213000	43493	2191;1453	40950	264264;264265;264266;264267;264268;264269;264270;264271;264272	354441;354442;354443;354444;354445;354446;354447;354448;354449	354447			9	
RLEAGAMVLADR	0	Unmodified	1300.6922	0.69215444	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			43.931	42.36	2	0.0011517	34692	160511_QHF_FH_JSI9i_3	82.171	61.269			0.93647	2.5645	70.131	3	1	Plateau	1.7396	1.4025	89.202	2	1	Median	0.69991	0.82471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113980000	49932000	64045000	87310000	33163000	54147000	26666000	16769000	9897500	0	0	0	0	0	0	43494	1254	40951	264273;264274;264275	354450;354451;354452	354452			3	
RLEAMLK	1	Unmodified	859.49496	0.49495818	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			24.304	23.005	2;3	0.0030882	19067	160511_QHF_FH_JSI10i_3	65.252	33.963			0.67514	0.67132	130.1	3	1	Plateau	2.0713	1.6821	178.53	2	1	Median	0.80308	0.9757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	199830000	83406000	116430000	119690000	42712000	76981000	80140000	40694000	39446000	0	0	0	0	0	0	43495	3328	40952	264276;264277;264278	354453;354454;354455	354453			3	
RLEASDGGLDSAELAAELGMEHQAVVGAVK	1	Unmodified	3022.503	0.50296327	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	85.85	85.551	3;4	3.2319E-32	76199	160511_QHF_FH_JSI11i_3	135.41	124.6			0.75092	0.76653	95.799	6	4	Median	0.15107	0.12941	23.445	2	2	Median	0.7133	0.88312	NaN	1	1	Median	0.83655	0.79162	10.081	2	0	Median	0.79052	0.79707	NaN	1	1	Median	383540000	217450000	166090000	79271000	57316000	21955000	21603000	12155000	9447300	240760000	128160000	112600000	41906000	19814000	22091000	43496	5502	40953	264279;264280;264281;264282;264283;264284	354456;354457;354458;354459;354460;354461;354462;354463	354458			8	
RLEASETESFGNEIYTVK	1	Unmodified	2072.0062	0.006214175	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	58.195	58.064	3	2.9346E-07	51422	160511_QHF_FH_JSI11i_3	110.77	99.469			0.17402	0.17103	16.027	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16144	0.15271	NaN	1	1	Median	0.18759	0.19155	NaN	1	1	Median	366430000	319850000	46573000	0	0	0	0	0	0	228900000	201520000	27377000	137530000	118340000	19196000	43497	301	40954	264285;264286	354464;354465;354466	354464			3	
RLEDLIQGLTGEK	1	Unmodified	1470.8042	0.80420731	20	A5PLL7	TMEM189	Transmembrane protein 189	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		74.982	74.982	3	0.0026733	66914	160511_QHF_FH_JSI11i_3	47.532	38.244			0.82254	0.7779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82254	0.7779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41652000	25857000	15795000	0	0	0	0	0	0	41652000	25857000	15795000	0	0	0	43498	20	40955	264287	354467	354467			1	
RLEDLSESIVNDFAYMK	1	Oxidation (M)	2044.9776	0.97755658	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	84.078	83.983	3	4.9842E-06	72873	160511_QHF_FH_JSI12i_3	95.767	90.107			1.1701	1.1368	6.8387	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3037	1.1931	NaN	1	0	Median	1.0501	1.0831	NaN	1	0	Median	145870000	62538000	83330000	0	0	0	0	0	0	47166000	21852000	25314000	98701000	40685000	58016000	43499	1678	40956	264288;264289	354468;354469;354470	354469		1366	3	
RLEDLSESIVNDFAYMK	1	Unmodified	2028.9826	0.98264196	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.456		12	5							2	2	6	7	97.356	97.19	2;3	2.9717E-08	83813	160511_QHF_FH_JSI12i_3	131.18	121.9			0.75152	0.77638	21.576	16	7	Median	0.87633	0.73605	4.9318	2	1	Median	0.59135	0.71409	14.44	2	1	Median	0.75279	0.74152	11.64	5	2	Median	0.75025	0.80747	31.734	7	3	Median	1588300000	889240000	699090000	168460000	76136000	92323000	187460000	119580000	67882000	429620000	250300000	179310000	802790000	443230000	359570000	43500	1678	40956	264290;264291;264292;264293;264294;264295;264296;264297;264298;264299;264300;264301;264302;264303;264304;264305;264306	354471;354472;354473;354474;354475;354476;354477;354478;354479;354480;354481;354482;354483;354484;354485;354486;354487;354488;354489;354490;354491;354492;354493;354494;354495;354496;354497	354495			26	
RLEEIMK	1	Unmodified	917.50044	0.50043749	2521;2812	Q14244;Q3KQU3	MAP7;MAP7D1	Ensconsin;MAP7 domain-containing protein 1	no	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	21.179	21.019	2	0.020353	18282	160511_QHF_FH_JSI9i_2	61.962	0			5.2676	5.2829	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.2676	5.2829	NaN	1	1	Median	77259000	22248000	55011000	0	0	0	0	0	0	15061000	15061000	0	62198000	7187200	55011000	43501	2521;2812	40957	264307;264308;264309	354498;354499;354500	354498			3	
RLEEIPLIK	1	Unmodified	1109.6808	0.6808447	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							3	3	3	4	54.826	53.961	2;3	1.9961E-05	46108	160511_QHF_FH_JSI12i_3	107.15	47.135			0.88294	1.022	15.856	13	0	Median	1.2305	1.0449	7.0874	3	0	Median	0.82623	1.0345	6.2571	3	0	Median	0.86608	0.87122	10.046	3	0	Median	1.3983	1.4181	28.045	4	0	Linear	2458800000	1230100000	1228700000	275070000	113360000	161700000	467740000	255580000	212160000	797070000	389670000	407400000	918900000	471480000	447420000	43502	2502	40958	264310;264311;264312;264313;264314;264315;264316;264317;264318;264319;264320;264321;264322	354501;354502;354503;354504;354505;354506;354507;354508;354509;354510;354511;354512;354513;354514;354515;354516;354517;354518;354519;354520;354521;354522;354523	354523			23	
RLEELEAK	1	Unmodified	986.53966	0.53965977	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	16.949	16.543	2;3	0.0014803	13041	160511_QHF_FH_JSI12i_3	90.906	43.824			0.64143	0.72837	104.6	4	4	Median	NaN	NaN	NaN	0	0	Median	0.9362	1.1552	142.75	2	2	Median	0.32725	0.32878	NaN	1	1	Median	1.2273	1.2602	NaN	1	1	Median	447900000	214420000	233470000	0	0	0	157260000	83023000	74236000	104420000	61974000	42448000	186210000	69427000	116790000	43503	454	40959	264323;264324;264325;264326;264327;264328	354524;354525;354526;354527;354528;354529	354529			6	
RLEENDDDAYLNSPWADNTALK	1	Unmodified	2549.167	0.16702493	1888	P57076	C21orf59	UPF0769 protein C21orf59	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	68.09	67.792	3	2.3048E-05	58682	160511_QHF_FH_JSI12i_3	62.611	49.291			2.2889	2.3219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2889	2.3219	NaN	1	1	Median	28941000	6955600	21985000	0	0	0	0	0	0	0	0	0	28941000	6955600	21985000	43504	1888	40960	264329	354530	354530			1	
RLEEPEEPK	1	Unmodified	1125.5666	0.5666028	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.73	3	8	4				2	4		3	4	7	7	16.917	14.054	2;3	8.4051E-05	11721	160511_QHF_FH_JSI11i_3	70.552	46.521			0.79884	0.48824	27.909	21	0	Linear	0.96766	0.8049	3.3241	3	0	Median	0.66136	0.81289	8.9484	4	0	Linear	0.79884	0.76518	17.499	7	0	Median	0.71199	0.7761	45.794	7	0	Median	4456600000	2567200000	1889400000	605650000	275850000	329800000	528940000	298610000	230330000	1997100000	1169100000	827960000	1324900000	823610000	501330000	43505	571	40961	264330;264331;264332;264333;264334;264335;264336;264337;264338;264339;264340;264341;264342;264343;264344;264345;264346;264347;264348;264349;264350	354531;354532;354533;354534;354535;354536;354537;354538;354539;354540;354541;354542;354543;354544;354545;354546;354547;354548;354549;354550;354551;354552;354553;354554;354555;354556;354557	354533			27	
RLEEPSLR	0	Unmodified	998.55089	0.55089316	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By MS/MS			2.67	0.471		1	2								3			23.412	22.285	2;3	0.0068041	18357	160511_QHF_FH_JSI10i_3	38.086	7.0126			1.06	1.2445	19.725	3	2	Median	NaN	NaN	NaN	0	0	Median	1.06	1.2445	19.725	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157420000	76511000	80908000	0	0	0	157420000	76511000	80908000	0	0	0	0	0	0	43506	133	40962	264351;264352;264353	354558;354559;354560	354558			3	
RLEESDVLQEAR	0	Unmodified	1443.7318	0.73177065	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.59		8	1					3		3	2	4	3	38.511	35.321	2;3	1.222E-05	31009	160511_QHF_FH_JSI10i_2	131.37	80.277			0.95997	0.98059	19.936	12	2	Median	1.3368	1.1337	9.9474	3	1	Median	0.79849	0.98209	10.492	2	0	Median	1.0548	1.0083	9.6694	4	1	Median	0.62446	0.66899	12.519	3	0	Plateau	691740000	338240000	353490000	152520000	65890000	86627000	180570000	104940000	75637000	318050000	144270000	173780000	40592000	23146000	17447000	43507	346	40963	264354;264355;264356;264357;264358;264359;264360;264361;264362;264363;264364;264365	354561;354562;354563;354564;354565;354566;354567;354568;354569;354570;354571;354572;354573;354574;354575;354576;354577;354578	354578			18	
RLEFENQK	1	Unmodified	1062.5458	0.54580778	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							2	2	2		16.452	15.794	2;3	0.0023317	12616	160511_QHF_FH_JSI9i_3	48.048	22.959			0.94721	0.97397	16.04	6	0	Median	1.4058	1.1468	15.513	2	0	Median	0.83132	0.97495	12.184	2	0	Median	0.91293	0.86375	9.4035	2	0	Median	NaN	NaN	NaN	0	0	Median	598620000	252490000	346130000	66033000	25878000	40155000	209340000	113150000	96193000	323240000	113460000	209790000	0	0	0	43508	2560	40964	264366;264367;264368;264369;264370;264371	354579;354580;354581;354582;354583;354584;354585	354583			7	
RLEFLYDK	1	Unmodified	1082.576	0.57604528	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	48.255	47.313	2;3	0.0029533	39774	160511_QHF_FH_JSI10i_3	76.572	55.272			1.1253	1.0121	22.425	7	1	Median	1.3933	1.1289	15.451	2	0	Median	0.69711	0.80114	2.5733	2	0	Median	1.0649	1.0083	8.1211	2	0	Median	1.4898	1.4701	NaN	1	1	Median	1195400000	563320000	632040000	313790000	121980000	191820000	350530000	170710000	179820000	485240000	247880000	237350000	45802000	22752000	23050000	43509	636	40965	264372;264373;264374;264375;264376;264377;264378	354586;354587;354588;354589;354590;354591;354592	354589			7	
RLEFPSGETIVMHNPK	1	Unmodified	1853.9458	0.94580295	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		56.821	55.788	3	2.6548E-05	49051	160511_QHF_FH_JSI11i_3	83.966	73.77			0.93644	0.89463	7.3279	3	0	Median	1.0976	0.89592	NaN	1	0	Median	0.68126	0.78856	NaN	1	0	Median	0.93644	0.89463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	185880000	106720000	79158000	62331000	31986000	30345000	42215000	26633000	15582000	81332000	48100000	33231000	0	0	0	43510	5755	40966	264379;264380;264381	354593;354594;354595;354596;354597	354593			4	
RLEIEHSVPK	1	Unmodified	1206.6721	0.67207093	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	3	1	1	23.418	22.788	3;4	0.00075204	18881	160511_QHF_FH_JSI11i_3	46.73	15.857			0.90724	0.95983	33.493	4	1	Median	NaN	NaN	NaN	0	0	Median	0.99572	1.1531	35.966	2	1	Median	1.077	1.0303	NaN	1	0	Median	0.63805	0.66378	NaN	1	0	Median	360100000	190750000	169350000	0	0	0	130310000	65069000	65238000	180500000	95004000	85493000	49293000	30676000	18617000	43511	5153	40967	264382;264383;264384;264385;264386;264387	354598;354599;354600;354601;354602;354603;354604;354605	354598			7	
RLEINMK	1	Unmodified	902.50077	0.50077184	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.809	24.469	3	0.03866	19826	160511_QHF_FH_JSI9i_3	30.562	8.1754			0.98585	0.81292	NaN	1	1	Median	0.98585	0.81292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46782000	21699000	25083000	46782000	21699000	25083000	0	0	0	0	0	0	0	0	0	43512	3583	40968	264388	354606	354606			1	
RLELAGQLLSLLFEDLFK	1	Unmodified	2104.1932	0.19322708	5057	Q9NW08	POLR3B	DNA-directed RNA polymerase III subunit RPC2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.83	97.113	3	1.422E-06	57459	160513_QHF_FH_JSI10Kac_6	102.33	92.765			1.0435	1.244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0435	1.244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75844000	35361000	40482000	0	0	0	75844000	35361000	40482000	0	0	0	0	0	0	43513	5057	40969	264389	354607;354608	354607			2	
RLEPLGIIVK	1	Unmodified	1136.7281	0.72812924	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	61.452	60.648	2;3	0.00066768	53635	160511_QHF_FH_JSI11i_3	70.942	57.986			0.83935	0.75972	20.64	6	6	Median	0.88893	0.73202	9.4575	2	2	Median	0.84179	0.93056	NaN	1	1	Median	0.82052	0.75972	2.2613	2	2	Median	0.46788	0.50093	NaN	1	1	Median	259120000	130160000	128960000	92511000	44175000	48336000	29326000	15794000	13532000	125140000	61677000	63463000	12142000	8516500	3625900	43514	3516	40970	264390;264391;264392;264393;264394;264395	354609;354610;354611;354612;354613;354614	354609			6	
RLEQLGAQR	0	Unmodified	1069.5992	0.59924033	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			13.336	12.533	2;3	0.00047045	9821	160511_QHF_FH_JSI9i_3	81.95	38.181			0.42496	0.39829	105.3	4	1	Median	0.2097	0.16817	103.78	3	1	Median	0.86121	0.99643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	709560000	485990000	223560000	639230000	451430000	187800000	70326000	34565000	35762000	0	0	0	0	0	0	43515	1100	40971	264396;264397;264398;264399	354615;354616;354617;354618;354619	354618			5	
RLETYYK	1	Unmodified	971.50763	0.50763136	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	1	2	2	2	17.019	15.73	2;3	0.0090314	12845	160511_QHF_FH_JSI11i_3	81.548	52.399			1.342	1.5159	49.961	7	2	Median	2.7128	2.2006	NaN	1	1	Median	1.5809	1.829	26.551	2	0	Median	0.9322	0.89785	6.8743	2	0	Median	1.0875	1.1128	77.041	2	1	Median	1879800000	763810000	1116000000	63257000	23791000	39466000	136210000	49390000	86817000	956540000	419070000	537470000	723810000	271550000	452260000	43516	776	40972	264400;264401;264402;264403;264404;264405;264406	354620;354621;354622;354623;354624;354625;354626	354621			6	
RLEVLDSTK	1	Unmodified	1059.5924	0.59242362	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		2	8							2	4	4		26.278	25.621	2;3	0.00014374	21313	160511_QHF_FH_JSI10i_3	90.108	54.813			0.81999	0.84218	67.065	9	5	Median	1.1346	0.94208	48.219	2	0	Median	0.73604	0.84218	51.807	3	1	Median	0.86689	0.80538	93.853	4	4	Median	NaN	NaN	NaN	0	0	Median	1632000000	904730000	727250000	111110000	37717000	73393000	439420000	266470000	172950000	1081500000	600550000	480910000	0	0	0	43517	1611	40973	264407;264408;264409;264410;264411;264412;264413;264414;264415;264416	354627;354628;354629;354630;354631;354632;354633;354634;354635;354636	354631			9	
RLFDANK	1	Unmodified	862.4661	0.4661009	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		13.83	13.128	2;3	0.0035701	10337	160511_QHF_FH_JSI9i_3	63.306	18.614			0.56025	0.53961	19.505	4	2	Median	0.76049	0.60674	3.3828	2	1	Median	0.41945	0.49153	NaN	1	0	Median	0.42862	0.4052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1425100000	976750000	448400000	899120000	635460000	263660000	261790000	162880000	98917000	264230000	178410000	85822000	0	0	0	43518	856	40974	264417;264418;264419;264420	354637;354638;354639;354640;354641;354642	354642			6	
RLFDASSFGK	1	Unmodified	1126.5771	0.57710791	4626	Q9H0C2	SLC25A31	ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		45.417	36.267	3	0.05946	19830	160513_QHF_FH_JSI11Kac_6	11.731	6.2289			0.71155	0.84657	5.7827	3	0	Plateau	1.1524	0.93592	NaN	1	0	Median	0.71155	0.84657	NaN	1	0	Median	0.87705	0.84688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109030000	51028000	57999000	15536000	5291400	10245000	66492000	31574000	34918000	26998000	14163000	12835000	0	0	0	43519	4626	40975	264421;264422;264423	354643	354643			1	
RLFFWMQEPK	1	Oxidation (M)	1396.6962	0.69617719	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	1	1	By MS/MS				16	0									1	1				71.173	62.55	3	0.040002	33254	160513_QHF_FH_JSI9Kac_6	30.55	22.446			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43520	2726	40976	264424	354644	354644		2109	1	
RLFFWMQEPK	1	Unmodified	1380.7013	0.70126256	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				78.68	70.051	3	0.0016433	37833	160513_QHF_FH_JSI9Kac_6	64.374	49.498			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43521	2726	40976	264425	354645	354645			1	
RLGDSSGPALK	1	Unmodified	1099.5986	0.59857163	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				18.081	16.921	2;3	0.016789	13528	160511_QHF_FH_JSI9i_3	37.995	21.157			1.131	0.91831	23.205	2	1	Median	1.131	0.91831	23.205	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86923000	41925000	44998000	86923000	41925000	44998000	0	0	0	0	0	0	0	0	0	43522	5298	40977	264426;264427	354646;354647	354647			2	
RLGLPGDEVDNK	1	Unmodified	1311.6783	0.67827852	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.21		7	8					1	1	5	4	5	3	36.004	34.125	2;3	9.8482E-06	28377	160511_QHF_FH_JSI10i_3	102.62	96.388			0.89931	0.88791	21.39	17	2	Median	1.1194	0.94476	31.854	5	1	Median	0.87906	1.0508	20.127	4	0	Median	0.89931	0.8354	10.148	5	1	Median	0.7824	0.80878	1.8867	3	0	Median	2801400000	1451600000	1349900000	407380000	213940000	193440000	756530000	423570000	332950000	1374100000	663160000	710940000	263440000	150900000	112540000	43523	2094	40978	264428;264429;264430;264431;264432;264433;264434;264435;264436;264437;264438;264439;264440;264441;264442;264443;264444	354648;354649;354650;354651;354652;354653;354654;354655;354656;354657;354658;354659;354660;354661;354662;354663;354664;354665;354666;354667;354668;354669;354670;354671;354672;354673;354674;354675;354676;354677;354678;354679;354680;354681;354682;354683;354684;354685	354657			37	
RLGPGGLDPVEVYESLPEELQK	1	Unmodified	2424.2537	0.25365509	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							4	2	3	1	99.611	99.524	3;4	8.5839E-16	87272	160511_QHF_FH_JSI9i_2	133.84	125.02			0.83974	0.90047	19.834	8	1	Median	1.2583	1.0377	20.623	2	0	Median	0.79587	0.94992	6.9959	2	0	Median	0.99708	0.95836	22.476	3	1	Plateau	0.79208	0.78419	NaN	1	0	Median	703500000	336820000	366680000	138410000	59873000	78539000	256770000	138070000	118700000	280520000	126090000	154440000	27801000	12792000	15009000	43524	2738	40979	264445;264446;264447;264448;264449;264450;264451;264452;264453;264454	354686;354687;354688;354689;354690;354691;354692;354693;354694;354695;354696;354697;354698;354699;354700;354701;354702;354703;354704;354705;354706;354707;354708;354709;354710;354711;354712;354713;354714;354715	354702			30	
RLGSLVDEFK	1	Unmodified	1162.6346	0.63462279	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								2	2		53.255	52.477	2;3	0.00019519	46050	160511_QHF_FH_JSI11i_3	69.672	61.746			1.0332	1.0235	13.702	4	1	Median	NaN	NaN	NaN	0	0	Median	0.85412	0.98657	23.175	2	1	Median	1.0912	1.0235	3.5578	2	0	Median	NaN	NaN	NaN	0	0	Median	1074300000	487250000	587030000	0	0	0	373010000	181380000	191630000	701270000	305870000	395400000	0	0	0	43525	1023	40980	264455;264456;264457;264458	354716;354717;354718;354719;354720	354718			5	
RLGVLYWK	1	Unmodified	1033.6073	0.60728582	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			63.024	54.384	3	0.005467	29827	160513_QHF_FH_JSI10Kac_6	50.607	34.404			1.0718	1.0594	33.725	2	0	Median	1.006	0.83463	NaN	1	0	Median	1.1418	1.3447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63301000	31289000	32011000	15045000	7356400	7688100	48256000	23933000	24323000	0	0	0	0	0	0	43526	4461	40981	264459;264460	354721;354722	354722			2	
RLHGIVQR	0	Unmodified	977.58828	0.58828172	5813				yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.934	11.023	3	0.042584	8290	160511_QHF_FH_JSI12i_3	28.218	8.741	+		0.23585	0.24198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23585	0.24198	NaN	1	1	Median	304140000	248510000	55633000	0	0	0	0	0	0	0	0	0	304140000	248510000	55633000	43527	5813	40982	264461	354723	354723			1	
RLHGLDEEAEQK	1	Unmodified	1423.7056	0.7055559	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			17.418	16.304	2;3	8.9787E-06	12940	160511_QHF_FH_JSI9i_3	104.17	98.027			1.2986	1.0643	0.30744	2	0	Median	1.2986	1.0643	0.30744	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107940000	48502000	59435000	107940000	48502000	59435000	0	0	0	0	0	0	0	0	0	43528	1409	40983	264462;264463;264464	354724;354725;354726;354727;354728	354726			5	
RLIAEAK	1	Unmodified	799.49159	0.49158736	2450	Q13610	PWP1	Periodic tryptophan protein 1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		9.7925	9.382	2	0.041284	7129	160511_QHF_FH_JSI10i_3	47.082	8.1193			0.87167	0.9384	26.273	3	0	Median	1.1744	0.9384	NaN	1	0	Median	0.87167	1.0571	NaN	1	0	Median	0.68862	0.6394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	383990000	197360000	186630000	207010000	96497000	110510000	88014000	49644000	38370000	88974000	51218000	37756000	0	0	0	43529	2450	40984	264465;264466;264467	354729;354730	354729			2	
RLIAEGNK	1	Unmodified	899.51886	0.51886475	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				8.5798	7.9881	2	0.046098	5710	160511_QHF_FH_JSI9i_3	42.599	15.997			1.1264	0.91124	NaN	1	0	Median	1.1264	0.91124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85706000	40554000	45152000	85706000	40554000	45152000	0	0	0	0	0	0	0	0	0	43530	4080	40985	264468	354731;354732	354731			2	
RLIDLHSPSEIVK	1	Unmodified	1505.8566	0.85657723	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		4	18						4	12	8	3	3	54.171	51.738	2;3;4	1.5891E-05	43624	160511_QHF_FH_JSI10i_3	101.6	85.839			0.94208	0.90521	22.858	23	4	Median	1.0531	0.89633	24.511	9	3	Median	0.86507	1.0206	26.574	8	1	Median	0.94935	0.90093	4.1938	3	0	Median	0.71733	0.71979	19.619	3	0	Plateau	4326200000	2132100000	2194100000	1550600000	708230000	842320000	990750000	527670000	463070000	1636300000	806020000	830240000	148670000	90187000	58487000	43531	1918	40986	264469;264470;264471;264472;264473;264474;264475;264476;264477;264478;264479;264480;264481;264482;264483;264484;264485;264486;264487;264488;264489;264490;264491;264492;264493;264494	354733;354734;354735;354736;354737;354738;354739;354740;354741;354742;354743;354744;354745;354746;354747;354748;354749;354750;354751;354752;354753;354754;354755;354756;354757;354758;354759;354760;354761;354762;354763;354764;354765;354766;354767;354768;354769;354770;354771;354772;354773;354774;354775;354776;354777;354778;354779;354780	354744			47	
RLIELYK	1	Unmodified	933.56475	0.56475231	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		36.655	35.678	2;3	0.0024739	30997	160511_QHF_FH_JSI11i_3	75.854	19.844			0.8362	0.81592	30.06	6	1	Median	1.0042	0.81951	6.6748	2	0	Median	0.87309	1.0129	24.524	2	1	Median	0.59151	0.55702	13.981	2	0	Median	NaN	NaN	NaN	0	0	Median	602600000	306160000	296440000	192090000	88384000	103710000	133060000	67024000	66032000	277460000	150760000	126700000	0	0	0	43532	1471	40987	264495;264496;264497;264498;264499;264500	354781;354782;354783;354784;354785;354786;354787;354788;354789	354784			9	
RLIEQAK	1	Unmodified	856.51305	0.51305109	4993	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				8.4158	7.824	3	0.0036357	5606	160511_QHF_FH_JSI9i_3	60.76	20.657			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43533	4993	40988	264501	354790	354790			1	
RLIPDGCGVK	1	Unmodified	1113.5965	0.59646314	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	2	3	1	25.567	24.857	2;3	1.5109E-05	20632	160511_QHF_FH_JSI10i_3	78.655	65.699			1.0458	0.95353	37.053	8	1	Median	1.2495	1.0031	21.958	2	0	Median	1.1194	1.3074	3.4711	2	0	Median	0.97389	0.92897	48.497	3	1	Median	0.87953	0.87831	NaN	1	0	Median	1748400000	897450000	850950000	450860000	200260000	250590000	609560000	300420000	309140000	633860000	370580000	263290000	54115000	26184000	27932000	43534	1292	40989	264502;264503;264504;264505;264506;264507;264508;264509;264510	354791;354792;354793;354794;354795;354796;354797;354798;354799;354800;354801;354802;354803;354804	354798			14	
RLIVDVIR	0	Unmodified	982.62875	0.62874955	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			49.841	48.273	3	0.019411	40336	160511_QHF_FH_JSI10i_3	38.086	21.884			1.1166	1.3028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1166	1.3028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10025000	5063500	4961100	0	0	0	10025000	5063500	4961100	0	0	0	0	0	0	43535	1600	40990	264511	354805	354805			1	
RLLDQIVEK	1	Unmodified	1112.6554	0.65535823	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		40.169	39.163	2	3.2227E-05	32663	160511_QHF_FH_JSI10i_3	101.66	56.329			1.0027	0.91598	41.378	5	2	Median	1.064	0.87964	5.7251	2	0	Median	0.67143	0.80217	19.383	2	1	Median	2.2117	2.0481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	983530000	493750000	489770000	431460000	211580000	219880000	330090000	195160000	134930000	221970000	87007000	134960000	0	0	0	43536	3966	40991	264512;264513;264514;264515;264516	354806;354807;354808;354809;354810;354811;354812	354807			7	
RLLEDGEDFNLGDALDSSNSMQTIQK	1	Unmodified	2895.3556	0.35563033	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.668	2	6	3							2	2	3	4	84.85	84.266	3	1.4211E-49	75348	160511_QHF_FH_JSI11i_3	193.88	190.69			0.89	0.91232	27.452	10	3	Median	0.84625	0.72529	31.413	2	1	Median	1.0025	1.1921	18.365	2	0	Median	0.947	0.91901	27.788	3	1	Plateau	0.96204	0.96134	14.378	3	1	Median	1301400000	632450000	668940000	169240000	79843000	89400000	322390000	149880000	172510000	603630000	304420000	299220000	206120000	98311000	107810000	43537	842	40992	264517;264518;264519;264520;264521;264522;264523;264524;264525;264526;264527	354813;354814;354815;354816;354817;354818;354819;354820;354821;354822;354823;354824;354825;354826;354827;354828;354829;354830;354831;354832;354833;354834;354835;354836;354837;354838;354839;354840;354841;354842	354815			30	
RLLEDGEDFNLGDALDSSNSMQTIQK	1	Oxidation (M)	2911.3505	0.35054496	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	77.02	76.626	3	1.101E-42	68360	160511_QHF_FH_JSI11i_3	179.79	158.73			0.94233	0.86527	15.507	7	6	Median	1.019	0.86527	NaN	1	0	Median	0.80113	0.98285	23.375	2	2	Median	0.93419	0.8861	9.9668	2	2	Median	0.87682	0.83649	22.736	2	2	Median	282430000	149710000	132720000	21779000	10295000	11484000	66025000	33275000	32750000	132310000	72549000	59757000	62323000	33595000	28728000	43538	842	40992	264528;264529;264530;264531;264532;264533;264534	354843;354844;354845;354846;354847;354848;354849;354850;354851;354852;354853;354854	354845		361	12	
RLLEFELAQLTK	1	Unmodified	1459.8399	0.83986454	2421	Q13464	ROCK1	Rho-associated protein kinase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.499	78.499	3	0.0021888	70183	160511_QHF_FH_JSI11i_3	49.31	44.031			0.86343	0.79489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86343	0.79489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20590000	9105000	11485000	0	0	0	0	0	0	20590000	9105000	11485000	0	0	0	43539	2421	40993	264535	354855	354855			1	
RLLEFNQGK	1	Unmodified	1103.6087	0.60874239	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			30.788	29.411	3	0.047955	24466	160511_QHF_FH_JSI10i_3	38.086	23.42			0.86461	0.8407	2.8601	2	0	Median	1.0477	0.85787	NaN	1	0	Median	0.71354	0.82387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128360000	65185000	63179000	61724000	31243000	30480000	66640000	33941000	32698000	0	0	0	0	0	0	43540	1519	40994	264536;264537	354856	354856			0	
RLLEGDGGPNTGGMGAYCPAPQVSNDLLLK	1	Unmodified	3099.5118	0.51175382	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		81.811	81.163	3	1.4055E-15	71543	160511_QHF_FH_JSI9i_2	82.62	80.244			0.99945	1.006	18.458	4	2	Median	0.93899	0.81976	NaN	1	1	Median	0.94697	1.1347	17.813	2	1	Median	1.0638	1.0116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86259000	43666000	42593000	13509000	9337300	4171500	41947000	16624000	25323000	30804000	17705000	13099000	0	0	0	43541	1205	40995	264538;264539;264540;264541	354857;354858;354859;354860;354861;354862;354863;354864;354865	354861			9	
RLLGYVATLK	1	Unmodified	1132.6968	0.69682911	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			57.897	49.413	3	0.0027669	27223	160513_QHF_FH_JSI10Kac_6	50.108	14.663			2.1269	2.554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1269	2.554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32239000	11754000	20484000	0	0	0	32239000	11754000	20484000	0	0	0	0	0	0	43542	543	40996	264542	354866	354866			1	
RLLLDTLQLSK	1	Unmodified	1298.7922	0.79218606	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1	By matching		By MS/MS		3	0			2							1		1		67.955	67.211	3	5.529E-05	59722	160511_QHF_FH_JSI11i_3	79.82	44.175			0.94844	0.84551	0.77968	2	0	Median	1.0137	0.85019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88739	0.84086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40969000	18994000	21975000	15539000	7033900	8505600	0	0	0	25430000	11961000	13469000	0	0	0	43543	280	40997	264543;264544	354867;354868	354868			2	
RLLLEDLVK	1	Unmodified	1097.6808	0.6808447	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		68.215	68.215	2;3	0.0020229	57849	160511_QHF_FH_JSI10i_3	55.549	41.78			1.0562	0.96765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0562	0.96765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28153000	13512000	14641000	0	0	0	0	0	0	28153000	13512000	14641000	0	0	0	43544	2348	40998	264545;264546	354869;354870	354870			2	
RLLQDLEAK	1	Unmodified	1084.6241	0.6240581	4520	Q9BXL6	CARD14	Caspase recruitment domain-containing protein 14	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				16.957	15.843	2	0.055963	12540	160511_QHF_FH_JSI9i_3	40.002	0			1.1865	0.9837	NaN	1	0	Median	1.1865	0.9837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46408000	20239000	26169000	46408000	20239000	26169000	0	0	0	0	0	0	0	0	0	43545	4520	40999	264547	354871	354871			1	
RLLSDSLPPSTGTFQEAQSR	0	Unmodified	2189.1077	0.10765955	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				58.574	57.029	3	0.00024451	46718	160511_QHF_FH_JSI9i_3	53.585	48.78			1.0695	0.87365	11.063	2	1	Median	1.0695	0.87365	11.063	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57898000	28136000	29761000	57898000	28136000	29761000	0	0	0	0	0	0	0	0	0	43546	5616	41000	264548;264549	354872;354873	354872			2	
RLLSSAFDEVYPALPSDVQTAIK	1	Unmodified	2519.3272	0.32715438	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	95.577	95.237	3	5.3149E-06	79269	160511_QHF_FH_JSI10i_3	60.278	51.887			0.96922	0.91339	8.7139	6	2	Median	1.0871	0.92627	0.65049	2	0	Median	0.70674	0.84093	10.36	2	1	Median	1.0533	1.0241	NaN	1	1	Median	0.89183	0.89724	NaN	1	0	Median	161570000	94502000	67071000	29265000	15129000	14136000	33069000	17566000	15503000	63221000	40185000	23036000	36018000	21622000	14396000	43547	127	41001	264550;264551;264552;264553;264554;264555	354874;354875;354876;354877;354878;354879;354880;354881;354882	354876			9	
RLLVLQRVFYALSNK	1	Unmodified	1819.0832	0.083223125	2704	Q15751	HERC1	Probable E3 ubiquitin-protein ligase HERC1	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			22.045	15.109	6	0.060657	8957	160513_QHF_FH_JSI10Kac_6	6.1628	0.13123			0.75972	0.87819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75972	0.87819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4600300	3110400	1489800	0	0	0	4600300	3110400	1489800	0	0	0	0	0	0	43548	2704	41002	264556	354883	354883			1	
RLLVPILLPEK	1	Unmodified	1289.8435	0.84349335	508	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			83.174	82.055	3	0.0023252	68796	160511_QHF_FH_JSI10i_3	51.841	35.587			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43549	508	41003	264557;264558;264559;264560	354884;354885;354886;354887	354884			4	
RLMADELER	0	Unmodified	1131.5706	0.57064232	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				28.133	27.097	3	0.046131	23342	160511_QHF_FH_JSI9i_2	32.034	24.23			1.2693	1.0796	NaN	1	0	Median	1.2693	1.0796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39285000	19685000	19600000	39285000	19685000	19600000	0	0	0	0	0	0	0	0	0	43550	432	41004	264561	354888	354888			0	
RLMAEYK	1	Unmodified	909.47422	0.47422274	1914	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			15.875	14.881	3	0.012079	11777	160511_QHF_FH_JSI9i_3	39.646	39.646			0.9287	0.91138	3.1813	2	0	Median	1.0763	0.89111	NaN	1	0	Median	0.80138	0.93212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78365000	38856000	39509000	35377000	19511000	15866000	42988000	19345000	23642000	0	0	0	0	0	0	43551	1914	41005	264562;264563	354889	354889			1	
RLMDEAK	1	Unmodified	861.43784	0.43783723	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							1	3	2		8.5193	8.1773	2;3	0.0072372	5954	160511_QHF_FH_JSI10i_3	52.403	26.509			0.85491	0.82681	15.288	6	0	Median	0.9684	0.81833	NaN	1	0	Median	0.84085	0.99682	21.603	3	0	Median	0.84696	0.81088	4.2087	2	0	Median	NaN	NaN	NaN	0	0	Median	768850000	367170000	401690000	61203000	33569000	27633000	241510000	134850000	106660000	466140000	198750000	267390000	0	0	0	43552	4154	41006	264564;264565;264566;264567;264568;264569	354890;354891;354892;354893;354894;354895;354896	354894			7	
RLMTPWEESNVMQDK	1	Unmodified	1862.8655	0.86550371	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		59.613	59.613	3	0.042236	52934	160511_QHF_FH_JSI11i_3	29.216	16.931			1.208	1.1011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.208	1.1011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71267000	34430000	36837000	0	0	0	0	0	0	71267000	34430000	36837000	0	0	0	43553	4886	41007	264570	354897	354897			1	
RLNDFASTVR	0	Unmodified	1177.6204	0.62036971	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.09	27.71	2	0.030187	22597	160511_QHF_FH_JSI9i_3	59.067	37.604			0.59852	0.4841	NaN	1	1	Median	0.59852	0.4841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43817000	28485000	15331000	43817000	28485000	15331000	0	0	0	0	0	0	0	0	0	43554	1179	41008	264571	354898	354898			1	
RLNGPYLIIVPLSTLSNWTYEFDK	1	Unmodified	2838.4956	0.4956167	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.125	92.404	3	1.2077E-13	53942	160513_QHF_FH_JSI10Kac_6	99.93	92.819			0.67737	0.78055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67737	0.78055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180890000	106400000	74487000	0	0	0	180890000	106400000	74487000	0	0	0	0	0	0	43555	1736	41009	264572	354899;354900	354900			2	
RLNQVIFPVSYNDKFYK	2	Acetyl (K)	2172.1368	0.13677484	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	80.93	72.541	2;3	1.0876E-53	40674	160513_QHF_FH_JSI10Kac_6	191.49	160.27			0.96878	0.9193	197.98	9	2	Median	1.053	0.90004	2.9952	2	0	Median	0.79709	0.94695	3.288	2	0	Median	1.003	0.94133	4.9451	2	0	Median	0.72209	0.75873	387.84	3	2	Median	8298900000	4528000000	3770900000	2337500000	1149300000	1188200000	3335000000	1951400000	1383600000	1211900000	632720000	579220000	1414500000	794690000	619800000	43556	4614	41010	264573;264574;264575;264576;264577;264578;264579;264580;264581	354901;354902;354903;354904;354905;354906;354907;354908;354909;354910;354911;354912;354913;354914;354915;354916	354916	3197;3198		16	
RLNTEWSELENLVLK	1	Unmodified	1842.984	0.98396259	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								3	1		99.025	98.891	3	8.3219E-05	87084	160511_QHF_FH_JSI11i_3	77.726	65.581			0.86847	0.80339	22.186	3	1	Median	NaN	NaN	NaN	0	0	Median	0.83366	0.96771	27.451	2	1	Median	0.86847	0.80339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105320000	48997000	56323000	0	0	0	56113000	26575000	29539000	49206000	22423000	26784000	0	0	0	43557	1035	41011	264582;264583;264584;264585	354917;354918;354919;354920;354921	354917			5	
RLNVWDLSK	1	Unmodified	1129.6244	0.62439245	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	3	1		53.239	51.983	2;3	1.0747E-05	45086	160511_QHF_FH_JSI11i_3	83.647	80.669			0.9811	0.93753	14.619	5	1	Median	1.2768	1.0442	4.0118	2	0	Median	0.68689	0.78684	5.3594	2	1	Median	0.9811	0.93753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	711240000	379310000	331920000	184980000	88932000	96044000	280290000	168880000	111410000	245970000	121500000	124470000	0	0	0	43558	2283;2741	41012	264586;264587;264588;264589;264590;264591;264592	354922;354923;354924;354925;354926;354927;354928;354929;354930	354922			9	
RLPDGIGQLK	1	Unmodified	1095.64	0.64004252	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			43.96	42.415	2	0.043222	35416	160511_QHF_FH_JSI10i_3	37.191	19.806			1.5088	1.7163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5088	1.7163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13697000	4608100	9088500	0	0	0	13697000	4608100	9088500	0	0	0	0	0	0	43559	2506	41013	264593	354931	354931			1	
RLPDGQLQVTWEDSTTGK	1	Unmodified	2030.0069	0.006882877	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		59.517	59.517	3	0.00072336	52860	160511_QHF_FH_JSI11i_3	58.672	53.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9776100	0	9776100	0	0	0	0	0	0	9776100	0	9776100	0	0	0	43560	4879	41014	264594;264595;264596	354932;354933;354934	354932			3	
RLPDLIK	1	Unmodified	853.53854	0.53853756	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	3	2	1	42.291	41.188	2;3	0.0016918	35929	160511_QHF_FH_JSI11i_3	89.142	46.019			0.89756	0.88599	13.465	7	0	Median	1.0344	0.84757	18.257	2	0	Median	0.79186	0.90199	19.159	3	0	Median	0.92508	0.86311	3.7003	2	0	Median	NaN	NaN	NaN	0	0	Median	710540000	360400000	350140000	194110000	90533000	103570000	263800000	148140000	115660000	252640000	121730000	130910000	0	0	0	43561	2242	41015	264597;264598;264599;264600;264601;264602;264603;264604	354935;354936;354937;354938;354939;354940;354941;354942;354943;354944;354945;354946;354947;354948;354949;354950;354951;354952;354953;354954;354955;354956;354957	354937			23	
RLPEAIEEVK	1	Unmodified	1182.6608	0.66083754	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	4	1	39.587	39.078	2;3	3.7719E-05	34181	160511_QHF_FH_JSI11i_3	90.685	62.287			0.9068	0.93359	10.887	8	0	Median	0.90963	0.76009	NaN	1	0	Median	0.75538	0.93012	5.9679	2	0	Median	1.0399	1.0111	7.8954	4	0	Median	0.8954	0.89639	NaN	1	0	Median	896990000	456600000	440390000	67953000	32948000	35005000	165450000	94043000	71405000	574410000	289180000	285230000	89186000	40435000	48751000	43562	5249	41016	264605;264606;264607;264608;264609;264610;264611;264612	354958;354959;354960;354961;354962;354963;354964;354965	354960			8	
RLPENLYNDR	0	Unmodified	1288.6524	0.65239812	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			32.408	31.015	2;3	7.934E-07	25364	160511_QHF_FH_JSI9i_3	97.813	73.522			0.84731	0.9264	42.724	3	0	Median	1.1401	0.9264	NaN	1	0	Median	0.56362	0.66344	53.921	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250210000	154140000	96066000	111440000	57651000	53787000	138770000	96493000	42280000	0	0	0	0	0	0	43563	1066	41017	264613;264614;264615;264616	354966;354967;354968;354969;354970;354971	354971			6	
RLPEYPQVDDLLLR	0	Unmodified	1725.9414	0.94136949	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		81.296	81.296	3	0.0017706	72528	160511_QHF_FH_JSI11i_3	51.643	45.739			0.59831	0.55976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59831	0.55976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31308000	17863000	13445000	0	0	0	0	0	0	31308000	17863000	13445000	0	0	0	43564	5320	41018	264617	354972	354972			1	
RLPGPDELFR	0	Unmodified	1198.6459	0.64585618	3559	Q8N6N3	C1orf52	UPF0690 protein C1orf52	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	3	1		61.382	60.371	3	0.00026915	50953	160511_QHF_FH_JSI10i_3	65.5	50.24			1.341	1.3383	43.182	2	1	Median	2.1378	1.8162	NaN	1	1	Median	0.84117	0.98613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35374000	13409000	21965000	9956900	4651500	5305400	18446000	8757400	9688800	6970600	0	6970600	0	0	0	43565	3559	41019	264618;264619;264620;264621;264622	354973;354974;354975;354976;354977	354976			5	
RLPTEEEWEFAAR	0	Unmodified	1632.7896	0.78961988	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		59.17	58.878	2;3	0.00043126	52319	160511_QHF_FH_JSI11i_3	51.643	46.943			1.1383	1.9	47.423	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.9229	2.4209	NaN	1	1	Median	1.4401	1.3571	47.589	2	1	Median	NaN	NaN	NaN	0	0	Median	222340000	92172000	130170000	0	0	0	96256000	32331000	63925000	126090000	59841000	66248000	0	0	0	43566	3594	41020	264623;264624;264625	354978;354979;354980	354978			3	
RLPVMMDEALSYLEK	1	Unmodified	1793.9056	0.90557761	5706	Q9Y673	ALG5	Dolichyl-phosphate beta-glucosyltransferase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		101.12	101.03	3	2.0993E-05	83606	160511_QHF_FH_JSI10i_3	75.018	63.747			1.0493	0.92706	4.0405	2	0	Median	1.0828	0.90095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0168	0.95393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74793000	40523000	34269000	16316000	10027000	6288700	0	0	0	58477000	30496000	27981000	0	0	0	43567	5706	41021	264626;264627;264628	354981;354982	354982			2	
RLPVTNEMVHNLVAIELAYINTK	1	Unmodified	2637.4312	0.4312423	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			92.889	87.168	4	0.0096243	49957	160513_QHF_FH_JSI10Kac_6	35.246	28.134			0.55886	0.66424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55886	0.66424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	121240000	74030000	47214000	0	0	0	121240000	74030000	47214000	0	0	0	0	0	0	43568	133	41022	264629	354983	354983			0	
RLQAEAEEQK	1	Unmodified	1200.6099	0.6098646	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	4.86		5	4					2		2	4	4	1	8.3145	6.3165	2;3	0.0002337	5296	160511_QHF_FH_JSI10i_3	91.584	40.977			0.96269	1.0142	24.84	11	1	Median	1.3885	1.1726	22.097	2	0	Median	0.91466	1.1038	9.8085	4	0	Median	0.94761	0.91235	6.8287	4	0	Median	1.8825	2.0581	NaN	1	1	Median	681770000	350620000	331150000	129140000	54716000	74424000	305080000	172430000	132650000	246050000	122810000	123230000	1497700	659280	838440	43569	3799	41023	264630;264631;264632;264633;264634;264635;264636;264637;264638;264639;264640	354984;354985;354986;354987;354988;354989;354990;354991;354992;354993;354994;354995;354996;354997;354998	354987			13	
RLQDVSGQLNSTK	1	Unmodified	1444.7634	0.76340513	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.539	24.264	3	0.0024154	20028	160511_QHF_FH_JSI10i_3	49.216	37.051			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43570	1259	41024	264641	354999	354999			1	
RLQEAELR	0	Unmodified	1013.5618	0.56179219	2182	Q02040	AKAP17A	A-kinase anchor protein 17A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			14.721	13.876	3	0.061107	11045	160511_QHF_FH_JSI10i_3	17.819	1.6816			0.21601	0.25213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21601	0.25213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18038000	15208000	2830600	0	0	0	18038000	15208000	2830600	0	0	0	0	0	0	43571	2182	41025	264642	355000	355000			1	
RLQEALER	0	Unmodified	1013.5618	0.56179219	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.809	13.827	2	0.039986	10903	160511_QHF_FH_JSI9i_3	55.549	6.1315			1.0344	0.85045	NaN	1	1	Median	1.0344	0.85045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40318000	19923000	20395000	40318000	19923000	20395000	0	0	0	0	0	0	0	0	0	43572	2233	41026	264643	355001	355001			1	
RLQEAQLYK	1	Unmodified	1147.635	0.63495714	3547	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			22.58	21.327	2;3	0.00036638	17521	160511_QHF_FH_JSI10i_3	62.303	41.432			0.56408	0.66485	5.4074	3	1	Plateau	0.73108	0.60216	NaN	1	1	Median	0.56286	0.6508	4.2716	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141270000	85728000	55540000	23096000	12850000	10246000	118170000	72878000	45294000	0	0	0	0	0	0	43573	3547	41027	264644;264645;264646;264647	355002;355003;355004;355005	355003			4	
RLQEDPNYSPQR	0	Unmodified	1501.7274	0.72735397	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.337	17.261	3	0.045011	13990	160511_QHF_FH_JSI10i_3	21.351	15.636			0.79094	0.90015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79094	0.90015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11763000	7135800	4627300	0	0	0	11763000	7135800	4627300	0	0	0	0	0	0	43574	1585	41028	264648	355006	355006			1	
RLQEEINEVK	1	Unmodified	1256.6725	0.67246486	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		22.834	22.834	2;3	0.0013986	19299	160511_QHF_FH_JSI11i_3	53.569	36.095			1.1353	1.0535	40.404	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.0535	40.404	2	1	Median	NaN	NaN	NaN	0	0	Median	98845000	44659000	54186000	0	0	0	0	0	0	98845000	44659000	54186000	0	0	0	43575	3203	41029	264649;264650	355007;355008	355007			2	
RLQEETGAK	1	Unmodified	1030.5407	0.5407224	2255	Q07666;Q5VWX1	KHDRBS1;KHDRBS2	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	6.31		7	8					8	3	5	9	6	6	6.002	1.4915	2;3	4.8819E-05	3145	160511_QHF_FH_JSI12i_3	72.243	9.1677			0.89548	0.95949	33.591	21	9	Median	0.72773	0.60477	40.728	4	3	Median	1.0767	1.314	37.669	5	4	Median	1.258	1.2216	14.847	6	1	Median	0.85202	0.90753	11.845	6	1	Median	7261400000	3443800000	3817500000	1409000000	663090000	745930000	1234700000	648890000	585800000	3372600000	1459400000	1913200000	1245000000	672440000	572610000	43576	2255	41030	264651;264652;264653;264654;264655;264656;264657;264658;264659;264660;264661;264662;264663;264664;264665;264666;264667;264668;264669;264670;264671;264672;264673;264674;264675;264676	355009;355010;355011;355012;355013;355014;355015;355016;355017;355018;355019;355020;355021;355022;355023;355024;355025;355026;355027;355028;355029;355030;355031;355032;355033;355034;355035;355036;355037;355038	355037			29	
RLQELDAASK	1	Unmodified	1129.6091	0.60913632	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	18.082	17.622	2;3	0.001315	14618	160511_QHF_FH_JSI11i_3	84.687	60.919			2.1444	2.4326	32.821	4	4	Median	NaN	NaN	NaN	0	0	Median	2.0147	2.4326	30.604	2	2	Median	1.8167	1.6801	NaN	1	1	Median	3.0896	3.3031	NaN	1	1	Median	217080000	98549000	118530000	0	0	0	110420000	50234000	60190000	87570000	43248000	44322000	19085000	5066900	14018000	43577	931	41031	264677;264678;264679;264680;264681	355039;355040;355041;355042;355043	355039			5	
RLQFEEK	1	Unmodified	948.50288	0.50288033	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.608	14.608	2	0.044089	11786	160511_QHF_FH_JSI11i_3	45.718	3.6089			1.2815	1.1977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2815	1.1977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95191000	39463000	55728000	0	0	0	0	0	0	95191000	39463000	55728000	0	0	0	43578	4018	41032	264682	355044	355044			1	
RLQGEMMK	1	Unmodified	991.49431	0.49430626	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	1	2		13.231	12.748	2;3	0.0024629	10222	160511_QHF_FH_JSI9i_3	55.37	47.15			1.4465	1.2598	87.534	4	2	Median	0.8163	0.66421	29.788	2	0	Median	NaN	NaN	NaN	0	0	Median	2.8621	2.7141	47.804	2	2	Median	NaN	NaN	NaN	0	0	Median	372570000	192170000	180400000	306840000	175550000	131290000	0	0	0	65729000	16622000	49108000	0	0	0	43579	5185	41033	264683;264684;264685;264686;264687;264688	355045;355046;355047;355048;355049;355050	355049			6	
RLQGEMMK	1	Oxidation (M)	1007.4892	0.48922088	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				7.7673	7.2146	3	0.022704	5084	160511_QHF_FH_JSI9i_3	32.999	23.785			1.8505	1.5447	NaN	1	0	Median	1.8505	1.5447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101150000	29133000	72013000	101150000	29133000	72013000	0	0	0	0	0	0	0	0	0	43580	5185	41033	264689	355051	355051			1	
RLQGEVQR	0	Unmodified	984.54648	0.54647648	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			6.8113	6.2745	2	0.016158	4243	160511_QHF_FH_JSI9i_3	50.04	18.106			0.98955	0.9564	10.474	2	1	Median	1.1173	0.88813	NaN	1	0	Median	0.87641	1.0299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69127000	35694000	33433000	51520000	25182000	26338000	17607000	10512000	7095100	0	0	0	0	0	0	43581	671	41034	264690;264691	355052;355053;355054	355054			3	
RLQGQLEQGDDTAAERLEK	1	Unmodified	2156.0822	0.082173085	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	2	By MS/MS				3	0			2							2				35.098	33.655	3;4	4.2781E-06	27460	160511_QHF_FH_JSI9i_3	89.261	80.782			1.4139	1.1501	9.6554	2	0	Median	1.4139	1.1501	9.6554	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86823000	36716000	50108000	86823000	36716000	50108000	0	0	0	0	0	0	0	0	0	43582	3634	41035	264692;264693	355055;355056;355057;355058	355058			4	
RLQIEESSKPVR	1	Acetyl (K)	1482.8154	0.8154407	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			40.875	32.257	3	0.0037131	17955	160513_QHF_FH_JSI10Kac_6	63.76	29.978			0.77513	0.90417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77513	0.90417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16307000	8772600	7534000	0	0	0	16307000	8772600	7534000	0	0	0	0	0	0	43583	1045	41036	264694	355059;355060	355060	874		2	
RLQSIGTENTEENR	0	Unmodified	1645.802	0.80197548	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							3	1			17.139	16.052	2;3	7.7974E-05	12832	160511_QHF_FH_JSI9i_3	78.191	70.9			1.5099	1.2378	16.702	4	3	Median	1.5238	1.2386	2.0831	3	2	Median	0.7737	0.89857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116120000	47931000	68193000	103780000	39840000	63937000	12348000	8091400	4256400	0	0	0	0	0	0	43584	803	41037	264695;264696;264697;264698	355061;355062;355063;355064	355064			4	
RLQTQVFK	1	Unmodified	1018.5924	0.59236404	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.092	21.86	3	0.004064	17787	160511_QHF_FH_JSI10i_3	57.59	40.919			0.21763	0.25308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21763	0.25308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1205800000	1000700000	205130000	0	0	0	1205800000	1000700000	205130000	0	0	0	0	0	0	43585	1593	41038	264699	355065	355065			1	
RLQTSSVLVSGLR	0	Unmodified	1414.8256	0.82561145	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	15.8	0.433								1	3	1	2		1	56.22	46.657	3	0.00024272	24690	160513_QHF_FH_JSI9Kac_6	54.729	41.774			1.1839	1.0611	20.772	4	2	Linear	1.1381	0.97723	NaN	1	0	Median	0.87593	1.035	33.947	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0459	1.1523	NaN	1	1	Median	51342000	28634000	22708000	24188000	14475000	9712900	23096000	11858000	11238000	0	0	0	4057400	2300600	1756900	43586	1208	41039	264700;264701;264702;264703	355066;355067;355068;355069;355070	355067			5	
RLSDTVDK	1	Unmodified	932.49271	0.49270958	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.9456	8.3949	2	0.01684	6217	160511_QHF_FH_JSI10i_3	49.418	8.3889			0.88714	0.98217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88714	0.98217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30379000	12743000	17636000	0	0	0	30379000	12743000	17636000	0	0	0	0	0	0	43587	2357	41040	264704	355071	355071			1	
RLSDYSIGPNSK	1	Unmodified	1335.6783	0.67827852	1001	P11441	UBL4A	Ubiquitin-like protein 4A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.181	27.8	3	0.01585	22656	160511_QHF_FH_JSI9i_3	36.292	21.261			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43588	1001	41041	264705	355072	355072			1	
RLSEDYGVLK	1	Unmodified	1178.6295	0.62953741	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.52		9	8					4	8	9	7	6	7	38.467	34.033	2;3	1.06E-09	27753	160511_QHF_FH_JSI9i_3	136.33	77.649			0.84074	0.86331	31.184	29	3	Median	1.2082	1.0263	48.255	9	1	Median	0.87222	1.0002	16.452	7	1	Median	0.83305	0.82894	12.545	6	0	Median	0.76356	0.76346	21.905	7	1	Median	13682000000	6469500000	7213000000	1854700000	791630000	1063100000	3662700000	1886700000	1776000000	5597300000	2718100000	2879200000	2567700000	1073000000	1494700000	43589	1390	41042	264706;264707;264708;264709;264710;264711;264712;264713;264714;264715;264716;264717;264718;264719;264720;264721;264722;264723;264724;264725;264726;264727;264728;264729;264730;264731;264732;264733;264734	355073;355074;355075;355076;355077;355078;355079;355080;355081;355082;355083;355084;355085;355086;355087;355088;355089;355090;355091;355092;355093;355094;355095;355096;355097;355098;355099;355100;355101;355102;355103;355104;355105;355106;355107;355108;355109;355110;355111;355112;355113;355114;355115;355116;355117;355118;355119;355120;355121;355122;355123;355124;355125;355126;355127;355128;355129;355130;355131;355132	355099			59	
RLSEFGLIQEK	1	Unmodified	1318.7245	0.72450043	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			4							2	1	1		52.56	50.979	2;3	0.0050766	41933	160511_QHF_FH_JSI9i_3	34.685	20.721			1.1232	0.90994	32.09	3	0	Plateau	0.91973	0.74434	28.409	2	0	Median	0.99089	1.1482	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127530000	61870000	65664000	85080000	39161000	45919000	42454000	22709000	19745000	0	0	0	0	0	0	43590	4777	41043	264735;264736;264737;264738	355133;355134;355135	355135			3	
RLSHSQER	0	Unmodified	1011.521	0.52099001	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.387	9.7438	3	0.046866	7253	160511_QHF_FH_JSI9i_3	23.429	14.214			0.074952	0.060276	NaN	1	1	Median	0.074952	0.060276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145690000	132140000	13548000	145690000	132140000	13548000	0	0	0	0	0	0	0	0	0	43591	1016	41044	264739	355136	355136			1	
RLSQPESAEK	1	Unmodified	1143.5884	0.58840088	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			3							2	1			8.1251	7.5471	2;3	0.00097711	5335	160511_QHF_FH_JSI9i_3	68.735	27.748			2.6101	2.1542	26.94	3	0	Plateau	2.1701	1.7881	26.343	2	0	Median	1.1424	1.2764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75400000	26353000	49047000	54220000	18371000	35849000	21180000	7982200	13198000	0	0	0	0	0	0	43592	5380	41045	264740;264741;264742	355137;355138;355139	355137			3	
RLSQSDEDVIR	0	Unmodified	1316.6684	0.66844211	4766	Q9H7D7	WDR26	WD repeat-containing protein 26	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				21.917	20.959	3	0.060077	17869	160511_QHF_FH_JSI9i_2	14.436	3.8258			2.194	1.8855	NaN	1	1	Median	2.194	1.8855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24656000	6536200	18120000	24656000	6536200	18120000	0	0	0	0	0	0	0	0	0	43593	4766	41046	264743	355140	355140			1	
RLSSQLILLQAWTSHLWK	1	Unmodified	2179.2266	0.2265929	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			91.408	84.668	3;4	2.164E-07	48637	160513_QHF_FH_JSI10Kac_6	104.61	100.66			0.92645	1.0696	19.358	3	2	Plateau	1.8109	1.5296	NaN	1	1	Median	0.94499	1.097	3.5711	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	256200000	117490000	138720000	40970000	14862000	26108000	215230000	102630000	112610000	0	0	0	0	0	0	43594	3562	41047	264744;264745;264746	355141;355142;355143;355144	355142			4	
RLSTIDESGSILSDISFDK	1	Unmodified	2082.0481	0.04807899	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		85.639	85.639	3	0.016834	76439	160511_QHF_FH_JSI11i_3	34.174	25.465			2.2358	2.0722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2358	2.0722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15170000	3084000	12086000	0	0	0	0	0	0	15170000	3084000	12086000	0	0	0	43595	4634	41048	264747	355145	355145			1	
RLSYNTASNK	1	Unmodified	1152.5887	0.58873523	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	1	By MS/MS				16	0									2	2				13.215	5.9922	3	0.038174	4915	160513_QHF_FH_JSI9Kac_6	31.185	20.356			1.1905	1.0391	38.042	2	2	Median	1.1905	1.0391	38.042	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3924000	2036600	1887400	3924000	2036600	1887400	0	0	0	0	0	0	0	0	0	43596	1646	41049	264748;264749	355146;355147	355146			2	
RLTDADAMK	1	Oxidation (M)	1035.5019	0.50189405	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	5.92		3	6					5		4	2	5	3	10.051	6.5219	2;3	0.0015887	3277	160513_QHF_FH_JSI9Kac_5	61.593	44.756			1.0658	1.0188	46.982	14	2	Median	3.1805	2.6833	51.74	4	0	Linear	0.80728	0.9677	14.864	2	0	Median	0.97099	0.93319	62.035	5	2	Median	0.87425	0.95649	38.762	3	0	Median	1301600000	629980000	671660000	122220000	34679000	87544000	102640000	62628000	40008000	822800000	408400000	414410000	253970000	124280000	129700000	43597	1263	41050	264750;264751;264752;264753;264754;264755;264756;264757;264758;264759;264760;264761;264762;264763	355148;355149;355150;355151;355152;355153;355154;355155;355156;355157;355158;355159;355160	355152		890	12	
RLTDADAMK	1	Unmodified	1019.507	0.50697943	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.53		7	11					4	2	6	6	7	5	14.753	12.012	2;3	4.6556E-05	9561	160511_QHF_FH_JSI12i_3	72.275	51.405			0.95564	1.0205	61.538	22	13	Median	1.1415	0.96566	66.453	5	4	Median	0.99546	1.1487	81.412	6	4	Median	0.92652	0.90486	55.975	6	3	Median	0.96436	1.0786	49.603	5	2	Median	8926100000	4784800000	4141200000	1002900000	412500000	590390000	1848100000	986630000	861440000	3688900000	1882100000	1806800000	2386200000	1503600000	882580000	43598	1263	41050	264764;264765;264766;264767;264768;264769;264770;264771;264772;264773;264774;264775;264776;264777;264778;264779;264780;264781;264782;264783;264784;264785;264786;264787	355161;355162;355163;355164;355165;355166;355167;355168;355169;355170;355171;355172;355173;355174;355175;355176;355177;355178;355179;355180;355181;355182;355183;355184;355185;355186;355187;355188;355189;355190;355191	355188			31	
RLTDLDKAQLLEIAK	2	Acetyl (K)	1768.0094	0.0094490594	1141	P18583	SON	Protein SON	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By matching	By matching	15.8	0.4								1	4	1	2	1	1	82.089	74.131	2;3	0.00080337	41563	160513_QHF_FH_JSI10Kac_6	82.259	70.98			0.83222	0.97164	20.395	5	0	Median	0.75863	0.63969	NaN	1	0	Median	0.82521	0.98937	2.5575	2	0	Median	1.091	1.0718	NaN	1	0	Median	0.83222	0.87619	NaN	1	0	Median	789870000	441120000	348750000	165700000	116640000	49056000	580260000	302270000	277990000	5316000	2779400	2536600	38605000	19438000	19167000	43599	1141	41051	264788;264789;264790;264791;264792	355192;355193;355194;355195	355193	996		4	
RLTPTEVK	1	Unmodified	942.54983	0.54983053	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							4	2	1	1	12.812	12.292	2;3	0.006845	9702	160511_QHF_FH_JSI11i_3	61.679	26.573			0.80976	0.78523	16.507	6	1	Median	0.94628	0.79832	25.401	3	1	Median	0.66372	0.77235	NaN	1	0	Median	0.85473	0.82625	NaN	1	0	Median	0.71507	0.73745	NaN	1	0	Median	1761800000	885920000	875900000	842820000	409020000	433800000	330370000	182880000	147490000	475620000	234280000	241340000	113010000	59737000	53271000	43600	1265	41052	264793;264794;264795;264796;264797;264798;264799;264800	355196;355197;355198;355199;355200;355201;355202;355203;355204;355205;355206	355196			11	
RLTVSSLQESGLK	1	Unmodified	1416.7936	0.79364262	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							2	3			43.39	41.95	2;3	0.00025549	34987	160511_QHF_FH_JSI10i_3	65.895	57.581			0.79424	0.8328	19.496	5	0	Median	0.80198	0.65427	10.379	2	0	Median	0.79424	0.92962	7.7829	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	247470000	131380000	116090000	81278000	42307000	38971000	166190000	89072000	77116000	0	0	0	0	0	0	43601	1192	41053	264801;264802;264803;264804;264805	355207;355208;355209	355207			3	
RLVIQDK	1	Unmodified	870.5287	0.52870115	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.85		1	7						3	3	4	2	2	15.931	13.599	2;3	0.0033776	10923	160511_QHF_FH_JSI10i_3	67.032	23.224			0.83825	0.74298	19.91	11	0	Median	0.85412	0.69974	3.6385	3	0	Median	0.62024	0.72392	11.868	4	0	Linear	1.1868	1.1184	3.0136	2	0	Median	0.74678	0.76905	26.108	2	0	Median	4672100000	2405900000	2266100000	1923500000	926930000	996590000	1291600000	689260000	602350000	1357900000	716100000	641850000	98994000	73657000	25338000	43602	1590	41054	264806;264807;264808;264809;264810;264811;264812;264813;264814;264815;264816	355210;355211;355212;355213;355214;355215;355216;355217;355218	355210			9	
RLVIQDKNK	2	Acetyl (K)	1154.6772	0.6771563	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			28.733	20.767	3	0.028638	11991	160513_QHF_FH_JSI10Kac_6	53.756	40.8			8.7577	10.228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8.7577	10.228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2504900	236960	2267900	0	0	0	2504900	236960	2267900	0	0	0	0	0	0	43603	1590	41055	264817	355219	355219	1606		1	
RLVMAESEK	1	Unmodified	1061.5539	0.55392962	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.818	13.836	2	0.0084824	10917	160511_QHF_FH_JSI9i_3	66.621	33.781			1.9308	1.5672	NaN	1	1	Median	1.9308	1.5672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31215000	10572000	20643000	31215000	10572000	20643000	0	0	0	0	0	0	0	0	0	43604	2587	41056	264818	355220	355220			1	
RLVPGGGATEIELAK	1	Unmodified	1509.8515	0.85149185	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	5	2	1	48.987	47.983	2;3	5.5344E-17	42222	160511_QHF_FH_JSI9i_2	119.96	103.61			0.74511	0.85566	24.701	10	4	Median	0.93158	0.77569	25.975	2	1	Median	0.70932	0.85362	25.655	5	2	Median	0.71611	0.70079	43.45	2	1	Median	0.84824	0.85771	NaN	1	0	Median	3129200000	1703000000	1426100000	660780000	316930000	343860000	2102600000	1199600000	903010000	330510000	170090000	160420000	35298000	16439000	18858000	43605	1721	41057	264819;264820;264821;264822;264823;264824;264825;264826;264827;264828;264829	355221;355222;355223;355224;355225;355226;355227;355228;355229;355230;355231;355232;355233;355234;355235	355232			15	
RLVQSPNSYFMDVK	1	Unmodified	1682.845	0.84502627	1541;3208	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		57.817	56.79	3	3.1739E-05	47740	160511_QHF_FH_JSI10i_3	99.566	99.566			1.0256	0.8812	12.893	3	1	Plateau	1.0256	0.82868	NaN	1	0	Median	0.83465	0.94694	NaN	1	0	Median	1.1654	1.0724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	411450000	214710000	196740000	132200000	67751000	64450000	129050000	74827000	54218000	150210000	72132000	78074000	0	0	0	43606	1541;3208	41058	264830;264831;264832	355236;355237;355238	355237			3	
RLVQSPNSYFMDVK	1	Oxidation (M)	1698.8399	0.83994089	1541;3208	P42677;Q71UM5	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	no	no	0	0	1	1	By MS/MS	By MS/MS			3	0			3							2	1			51.641	50.056	3	0.00021838	41052	160511_QHF_FH_JSI9i_3	84.173	72.653			0.72116	0.72253	30.427	3	2	Median	0.69344	0.57148	33.168	2	2	Median	0.72116	0.79947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89582000	51041000	38541000	60318000	34199000	26118000	29264000	16841000	12423000	0	0	0	0	0	0	43607	1541;3208	41058	264833;264834;264835	355239;355240;355241;355242	355242		1209	4	
RLVVFPTDDISLK	1	Unmodified	1501.8504	0.85042922	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		75.45	74.499	2;3	1.8496E-05	66362	160511_QHF_FH_JSI11i_3	100.55	81.494			1.1593	0.97439	6.9256	6	0	Median	1.1933	0.97439	0.29639	2	0	Median	0.81671	0.93536	0.12857	2	0	Median	1.1593	1.0816	3.8991	2	0	Median	NaN	NaN	NaN	0	0	Median	571810000	262060000	309750000	184520000	90705000	93820000	178560000	88172000	90393000	208720000	83182000	125540000	0	0	0	43608	1388	41059	264836;264837;264838;264839;264840;264841	355243;355244;355245;355246;355247;355248;355249;355250;355251;355252;355253;355254;355255;355256	355245			14	
RLYEEEIR	0	Unmodified	1106.572	0.57202253	44	CON__O43790;CON__Q14533;CON__P78386;O43790;P78386;CON__Q6NT21;CON__P78385;P78385;A6NCN2	KRT86;KRT85;KRT83;KRT87P	Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb5;Keratin, type II cuticular Hb3;Putative keratin-87 protein	yes	no	0	0	0	1	By MS/MS				16	0									1	1				63.656	54.696	3	0.039859	29073	160513_QHF_FH_JSI9Kac_6	27.13	0		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43609	44	41060	264842	355257	355257			1	
RLYITTSLYSAWDK	1	Unmodified	1715.8883	0.88827129	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			77.273	71.207	2	0.056348	38899	160513_QHF_FH_JSI10Kac_6	43.548	10.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43610	2374	41061	264843	355258	355258			1	
RLYMGEIQ	0	Unmodified	1008.5063	0.50625115	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	40.293	39.721	2	0.01473	33649	160511_QHF_FH_JSI12i_3	57.281	50.457			1.2276	1.2795	9.3172	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2276	1.4086	NaN	1	0	Median	1.4428	1.379	NaN	1	0	Median	1.1618	1.1873	NaN	1	0	Median	496320000	221990000	274330000	0	0	0	59381000	28344000	31037000	182900000	81744000	101150000	254040000	111900000	142140000	43611	4029	41062	264844;264845;264846	355259;355260	355260			2	
RLYPAVDEQETPLPR	0	Unmodified	1782.9264	0.92644771	4236	Q96S59	RANBP9	Ran-binding protein 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			52.431	50.86	3	2.6288E-08	42530	160511_QHF_FH_JSI10i_3	115.68	96.607			1.1316	1.3094	13.936	3	2	Median	1.8659	1.4863	NaN	1	0	Median	1.045	1.2138	10.72	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176860000	84095000	92761000	52831000	18211000	34620000	124030000	65884000	58141000	0	0	0	0	0	0	43612	4236	41063	264847;264848;264849	355261;355262;355263;355264;355265	355262			5	
RLYSLALHPNAFK	1	Unmodified	1528.8514	0.85143227	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	61.474	52.358	3;4	0.004206	27563	160513_QHF_FH_JSI12Kac_6	34.179	29.195			0.76649	0.9141	59.226	3	0	Median	0.39933	0.34084	NaN	1	0	Median	0.76649	0.9141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90061	0.9848	NaN	1	0	Median	63850000	35979000	27870000	21550000	12676000	8874000	33065000	18444000	14621000	0	0	0	9234900	4859500	4375400	43613	2094	41064	264850;264851;264852	355266;355267;355268;355269;355270	355268			5	
RLYWDDLK	1	Unmodified	1107.5713	0.57129425	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							4	5	2	1	50.834	49.664	2;3	0.0012664	41523	160511_QHF_FH_JSI10i_3	66.299	51.155			0.948	0.87404	19.166	11	1	Median	1.0816	0.88904	16.262	4	0	Median	0.88264	1.0223	25.898	4	0	Median	0.85836	0.81296	15.19	2	0	Median	0.76014	0.78235	NaN	1	1	Median	2104500000	1119400000	985130000	392450000	194440000	198010000	629080000	348960000	280130000	949820000	510630000	439190000	133160000	65352000	67808000	43614	793	41065	264853;264854;264855;264856;264857;264858;264859;264860;264861;264862;264863;264864	355271;355272;355273;355274;355275;355276;355277;355278;355279;355280;355281;355282;355283;355284;355285;355286;355287;355288;355289;355290;355291	355280			21	
RLYYEGLQDK	1	Unmodified	1283.651	0.65100113	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		33.822	32.872	2;3	0.0012013	27453	160511_QHF_FH_JSI10i_3	63.408	49.599			1.3563	1.104	38.044	3	1	Plateau	1.3563	1.104	NaN	1	0	Median	0.88272	1.0143	NaN	1	1	Median	0.579	0.54976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148840000	80683000	68157000	62784000	34453000	28330000	59230000	31205000	28025000	26826000	15025000	11801000	0	0	0	43615	225	41066	264865;264866;264867;264868	355292;355293;355294;355295	355294			4	
RMAEVEAQK	1	Unmodified	1060.5335	0.53352853	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		8.3633	8.3633	2	0.021216	6074	160511_QHF_FH_JSI10i_3	48.283	16.349			0.46261	0.43703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46261	0.43703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22643000	15871000	6772100	0	0	0	0	0	0	22643000	15871000	6772100	0	0	0	43616	5412	41067	264869;264870	355296;355297	355297			2	
RMATEVAADALGEEWK	1	Unmodified	1775.8512	0.85123386	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.42		12	4					1	3	5	6	6	3	64.775	62.316	2;3	3.2213E-06	55171	160511_QHF_FH_JSI10i_2	125.73	95.92			1.0838	1.0587	33.227	20	4	Median	1.0382	0.89073	52.147	5	2	Median	0.97667	1.1916	21.536	6	0	Median	1.1182	1.0694	22.397	6	1	Median	0.76758	0.78485	36.81	3	1	Median	2995200000	1475400000	1519800000	288900000	132030000	156870000	905770000	437820000	467940000	1487900000	726170000	761680000	312640000	179340000	133300000	43617	2018	41068	264871;264872;264873;264874;264875;264876;264877;264878;264879;264880;264881;264882;264883;264884;264885;264886;264887;264888;264889;264890	355298;355299;355300;355301;355302;355303;355304;355305;355306;355307;355308;355309;355310;355311;355312;355313;355314;355315;355316;355317;355318	355312			18	
RMATEVAADALGEEWK	1	Oxidation (M)	1791.8461	0.84614848	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	1	1		By MS/MS	By matching	By matching	2.8	0.4		1	4								3	1	1	54.694	54.016	3	0.00090643	45274	160511_QHF_FH_JSI10i_3	56.851	34.376			0.97709	1.0157	43.895	4	1	Median	NaN	NaN	NaN	0	0	Median	0.84008	0.99657	34.414	2	1	Median	0.87841	0.81156	NaN	1	0	Median	1.8793	1.9869	NaN	1	0	Median	262310000	129720000	132590000	0	0	0	90621000	43498000	47123000	113120000	61434000	51683000	58569000	24786000	33784000	43618	2018	41068	264891;264892;264893;264894;264895	355319;355320;355321	355320		1677	3	
RMDAPASAAAVR	0	Unmodified	1214.619	0.6189895	338	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			19.128	18.039	2;3	0.0016694	14750	160511_QHF_FH_JSI10i_3	38.674	33.369			1.2695	1.2475	17.584	4	2	Median	1.6339	1.361	15.322	2	1	Median	0.96554	1.1225	17.933	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177650000	82110000	95536000	82141000	32518000	49623000	95505000	49592000	45913000	0	0	0	0	0	0	43619	338	41069	264896;264897;264898;264899	355322;355323;355324	355322			3	
RMDEISDHAK	1	Unmodified	1200.5557	0.55572054	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		10.297	10.016	3	0.016154	7527	160511_QHF_FH_JSI11i_3	37.995	31.021			1.1722	1.0554	114.66	2	2	Median	2.7579	2.3742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49821	0.46914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112380000	55775000	56601000	37282000	8871200	28411000	0	0	0	75094000	46903000	28190000	0	0	0	43620	1839	41070	264900;264901	355325;355326	355325			2	
RMEDETQK	1	Unmodified	1035.4655	0.46550855	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.6461	4.7386	2	0.0077502	2242	160511_QHF_FH_JSI12i_3	58.955	30.781			0.88635	0.92734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88635	0.92734	NaN	1	0	Median	37910000	17162000	20747000	0	0	0	0	0	0	0	0	0	37910000	17162000	20747000	43621	1636	41071	264902	355327	355327			1	
RMEELHNQEMQK	1	Oxidation (M)	1587.7134	0.71336017	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		7.964	7.964	3	0.014068	5662	160511_QHF_FH_JSI11i_3	37.613	29.889			1.2522	1.1847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2522	1.1847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57214000	24471000	32743000	0	0	0	0	0	0	57214000	24471000	32743000	0	0	0	43622	1222	41072	264903	355328	355328		851	1	
RMEELHNQEMQK	1	Unmodified	1571.7184	0.71844555	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			14.876	14.146	3	3.4483E-06	11752	160511_QHF_FH_JSI9i_2	97.69	92.48			1.2232	1.0622	47.557	3	1	Median	1.2232	1.0622	NaN	1	0	Median	1.155	1.3482	64.375	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143200000	71556000	71641000	78142000	36839000	41303000	65055000	34717000	30338000	0	0	0	0	0	0	43623	1222	41072	264904;264905;264906	355329;355330;355331;355332	355330			4	
RMEELHNQEVQK	1	Oxidation (M)	1555.7413	0.74128948	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		7.5747	7.5747	3	0.00020527	5263	160511_QHF_FH_JSI11i_3	69.03	63.715			0.86747	0.8204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86747	0.8204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65520000	35945000	29575000	0	0	0	0	0	0	65520000	35945000	29575000	0	0	0	43624	2644	41073	264907	355333	355333		2064	1	
RMEELHNQEVQK	1	Unmodified	1539.7464	0.74637486	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.05		5	5						2	2	4	3	3	13.873	12.1	2;3;4	3.6848E-23	9283	160511_QHF_FH_JSI11i_3	148.68	126.92			1.4217	1.3333	59.327	11	4	Median	2.1028	1.7935	7.1538	2	1	Median	1.0609	1.3312	36.557	3	2	Plateau	1.4217	1.3685	85.939	3	1	Plateau	0.83515	0.82307	18.388	3	0	Median	1185600000	532700000	652910000	132850000	35588000	97262000	204220000	100960000	103270000	571550000	256860000	314680000	276980000	139290000	137690000	43625	2644	41073	264908;264909;264910;264911;264912;264913;264914;264915;264916;264917;264918;264919	355334;355335;355336;355337;355338;355339;355340;355341;355342;355343;355344;355345	355335			12	
RMEELNSEK	1	Unmodified	1134.5339	0.53392246	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		9.9101	9.5292	2	0.0010887	7589	160511_QHF_FH_JSI10i_2	81.972	57.049			0.80182	1.5221	56.048	3	0	Plateau	1.8609	1.5221	NaN	1	0	Median	1.6727	2.1035	NaN	1	0	Median	0.77349	0.70636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142830000	71152000	71677000	31379000	14500000	16879000	40729000	17686000	23043000	70720000	38966000	31754000	0	0	0	43626	1435	41074	264920;264921;264922;264923	355346;355347;355348;355349	355349			4	
RMEIQEAIK	1	Unmodified	1116.5961	0.59612879	3908	Q92925	SMARCD2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		28.149	28.149	2	0.00085049	24255	160511_QHF_FH_JSI11i_3	84.213	39.766			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43627	3908	41075	264924	355350	355350			1	
RMEIQVK	1	Unmodified	902.50077	0.50077184	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		18.24	17.345	2;3	0.011656	13956	160511_QHF_FH_JSI9i_3	70.919	35.039			0.66286	0.69094	12.853	5	0	Median	0.75412	0.61331	16.855	2	0	Median	0.62911	0.72436	6.4493	2	0	Median	0.66286	0.61205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	430370000	263290000	167080000	94726000	58683000	36043000	180340000	118000000	62341000	155310000	86611000	68697000	0	0	0	43628	1016	41076	264925;264926;264927;264928;264929	355351;355352;355353	355353			3	
RMELKADQLYK	2	Acetyl (K);Oxidation (M)	1451.7442	0.74424959	903;1328	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	no	no	1	0	1	2				By MS/MS	15.3	0.471								2	1				3	42.993	33.204	3	0.023638	17791	160513_QHF_FH_JSI12Kac_5	41.684	30.471			1.2196	1.3143	18.978	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2196	1.3143	18.978	3	0	Plateau	16125000	9424000	6700700	0	0	0	0	0	0	0	0	0	16125000	9424000	6700700	43629	903;1328	41077	264930;264931;264932	355354;355355	355354	658;659		1	
RMELKADQLYK	2	Acetyl (K)	1435.7493	0.74933497	903;1328	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	no	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.331								1	7	1	3	2	2	55.298	45.785	2;3	4.17E-07	23866	160513_QHF_FH_JSI12Kac_6	111.94	91.079			1.1027	1.1851	72.801	8	1	Median	1.2342	1.0733	NaN	1	0	Median	1.0272	1.1998	118.95	3	1	Plateau	1.1325	1.0947	16.049	2	0	Median	1.1807	1.2715	0.17491	2	0	Median	239460000	114570000	124900000	29900000	16034000	13866000	108250000	49058000	59189000	47612000	24117000	23495000	53706000	25358000	28348000	43630	903;1328	41077	264933;264934;264935;264936;264937;264938;264939;264940	355356;355357;355358;355359;355360;355361;355362	355359	658;659		7	
RMGESDDSILR	0	Unmodified	1277.6034	0.60339901	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.32		9	11					1	4	5	9	7	4	26.098	24.037	2;3	1.3516E-23	20795	160511_QHF_FH_JSI9i_2	146.16	127.03			1.0041	1.0072	30.671	24	3	Median	1.4376	1.2324	18.968	5	0	Median	0.72291	0.85969	41.304	8	2	Median	0.97969	0.98225	25.821	7	1	Median	0.92709	0.95654	21.07	4	0	Median	3601300000	1696000000	1905300000	805280000	332500000	472780000	1713000000	844540000	868490000	935060000	445660000	489400000	147900000	73307000	74596000	43631	2059	41078	264941;264942;264943;264944;264945;264946;264947;264948;264949;264950;264951;264952;264953;264954;264955;264956;264957;264958;264959;264960;264961;264962;264963;264964;264965	355363;355364;355365;355366;355367;355368;355369;355370;355371;355372;355373;355374;355375;355376;355377;355378;355379;355380;355381;355382;355383;355384;355385;355386;355387;355388;355389;355390;355391;355392;355393;355394;355395;355396;355397	355380			33	
RMGESDDSILR	0	Oxidation (M)	1293.5983	0.59831364	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	1	1		By MS/MS	By matching		2.8	0.4		1	4								4	1		21.363	20.487	2;3	0.00012039	19769	160511_QHF_FH_JSI10i_3	73.273	66.98			1.1727	1.3535	38.152	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2074	1.3935	40.068	4	1	Median	0.97322	0.90542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220550000	103430000	117120000	0	0	0	175580000	80343000	95241000	44970000	23088000	21882000	0	0	0	43632	2059	41078	264966;264967;264968;264969;264970	355398;355399;355400;355401	355398		1718	3	
RMGIVSDYEK	1	Unmodified	1196.586	0.58595803	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				28.505	27.13	2	0.013406	22022	160511_QHF_FH_JSI9i_3	52.79	22.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43633	4615	41079	264971;264972	355402;355403	355402			2	
RMGPGATAGGAEK	1	Unmodified	1201.5874	0.58735502	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			8.0901	7.5258	2;3	0.00010182	5312	160511_QHF_FH_JSI9i_3	70.622	62.401			0.8794	0.85096	14.146	3	1	Plateau	0.96424	0.77117	NaN	1	0	Median	0.84497	0.97609	5.476	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	299760000	157170000	142590000	155280000	82428000	72856000	144470000	74738000	69734000	0	0	0	0	0	0	43634	2020	41080	264973;264974;264975	355404;355405;355406;355407;355408	355408			5	
RMGPGATAGGAEK	1	Oxidation (M)	1217.5823	0.58226964	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	1	1				By MS/MS	15	0								1					1	5.6628	-3.7026	3	0.056308	1782	160513_QHF_FH_JSI12Kac_5	33.204	21.338			0.64421	0.7046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64421	0.7046	NaN	1	1	Median	1718000	969510	748480	0	0	0	0	0	0	0	0	0	1718000	969510	748480	43635	2020	41080	264976	355409	355409		1679	1	
RMIETAQVDER	0	Unmodified	1346.6612	0.66124824	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	1	By MS/MS	By MS/MS			5.4	5.31		1	3						1	2	3			20.208	19.083	2;3	2.7695E-05	15362	160511_QHF_FH_JSI9i_3	99.283	65.03			0.81832	0.95077	35.453	4	1	Median	0.97404	0.81762	55.908	2	1	Median	0.81832	0.95077	20.43	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178290000	92093000	86201000	64768000	29497000	35272000	113520000	62596000	50929000	0	0	0	0	0	0	43636	5388	41081	264977;264978;264979;264980;264981	355410;355411;355412;355413;355414;355415;355416	355413			7	
RMIETAQVDER	0	Oxidation (M)	1362.6562	0.65616287	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			20.227	19.056	3	0.014188	15653	160511_QHF_FH_JSI10i_3	41.383	20.35			1.8641	2.1615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8641	2.1615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24459000	8116600	16342000	0	0	0	24459000	8116600	16342000	0	0	0	0	0	0	43637	5388	41081	264982	355417;355418	355418		2649	2	
RMILIYLLPVK	1	Unmodified	1357.8519	0.85194955	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	86.831	78.212	3	0.0004828	43184	160513_QHF_FH_JSI9Kac_6	76.143	56.748			0.80651	0.68651	NaN	1	1	Median	0.80651	0.68651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93163000	46044000	47118000	93163000	46044000	47118000	0	0	0	0	0	0	0	0	0	43638	2909	41082	264983;264984;264985;264986	355419;355420;355421;355422	355420			4	
RMILIYLLPVK	1	Oxidation (M)	1373.8469	0.84686417	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	1		By MS/MS		By MS/MS	16	0									2		1		1	80.349	74.753	3	0.00030132	41008	160513_QHF_FH_JSI10Kac_6	84.658	70.629			0.94122	1.1372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94122	1.1372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64289000	32004000	32285000	0	0	0	64289000	32004000	32285000	0	0	0	0	0	0	43639	2909	41082	264987;264988	355423;355424	355424		2166	2	
RMLDPSIK	1	Unmodified	958.52699	0.52698659	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		24.337	23.7	3	0.013996	20062	160511_QHF_FH_JSI11i_3	43.083	26.88			1.6917	1.7509	77.284	2	1	Median	NaN	NaN	NaN	0	0	Median	2.5909	3.0241	NaN	1	0	Median	1.1046	1.0137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	579830000	247210000	332630000	0	0	0	233240000	111960000	121280000	346600000	135250000	211350000	0	0	0	43640	5160	41083	264989;264990	355425;355426	355425			2	
RMLDPSIK	1	Oxidation (M)	974.5219	0.52190122	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				15.545	14.491	3	0.011785	11467	160511_QHF_FH_JSI9i_3	40.352	17.612			1.2568	1.0241	NaN	1	0	Median	1.2568	1.0241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37994000	19023000	18971000	37994000	19023000	18971000	0	0	0	0	0	0	0	0	0	43641	5160	41083	264991	355427	355427		2593	1	
RMNTLQAIWMMDPK	1	Unmodified	1733.8415	0.84153757	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			79.38	73.74	3	0.0062094	40302	160513_QHF_FH_JSI10Kac_6	42.813	31.373			0.61196	0.73001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61196	0.73001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73292000	44904000	28388000	0	0	0	73292000	44904000	28388000	0	0	0	0	0	0	43642	2328	41084	264992	355428	355428			1	
RMNYSDAIVWLK	1	Unmodified	1494.7653	0.76531938	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		73.371	70.186	2;3	0.0045187	63490	160511_QHF_FH_JSI11i_3	53.967	41.089			0.61182	0.63922	39.881	2	1	Median	NaN	NaN	NaN	0	0	Median	0.41717	0.48215	NaN	1	1	Median	0.89728	0.84747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114360000	70665000	43698000	0	0	0	54123000	39830000	14293000	60240000	30835000	29405000	0	0	0	43643	375	41085	264993;264994	355429;355430	355429			1	
RMQEIEEMEK	1	Unmodified	1321.6006	0.60062182	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	1		By MS/MS			2	0		2									2			27.035	26.121	2	0.0051898	22657	160511_QHF_FH_JSI10i_2	72.006	56.855			2.0005	2.5734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0005	2.5734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23863000	12920000	10943000	0	0	0	23863000	12920000	10943000	0	0	0	0	0	0	43644	4242	41086	264995;264996	355431;355432	355431			2	
RMQEVYNFNAINNSEIR	0	Unmodified	2097.0062	0.0061713705	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			59.519	57.987	3	1.5802E-05	48553	160511_QHF_FH_JSI10i_3	83.404	73.747			1.0558	1.0276	8.2034	2	0	Median	1.182	0.96965	NaN	1	0	Median	0.94311	1.0889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157510000	74371000	83142000	88851000	43637000	45215000	68662000	30734000	37928000	0	0	0	0	0	0	43645	943	41087	264997;264998	355433;355434;355435	355433			3	
RMQEVYNFNAINNSEIR	0	Oxidation (M)	2113.0011	0.0010859926	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				53.046	51.463	3	0.00023317	42211	160511_QHF_FH_JSI9i_3	62.475	55.486			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43646	943	41087	264999	355436	355436		520	1	
RMQVEHPEK	1	Unmodified	1152.571	0.57097667	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			3							2	1			7.591	7.0543	2;3	0.0030055	4910	160511_QHF_FH_JSI9i_3	47.706	26.02			0.54626	0.5168	12.048	2	0	Median	0.69773	0.56276	NaN	1	0	Median	0.42768	0.47459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86804000	51526000	35278000	57562000	31212000	26350000	29242000	20314000	8928100	0	0	0	0	0	0	43647	3593	41088	265000;265001;265002	355437;355438	355437			2	
RMTGSEFDFEEMK	1	Unmodified	1605.6803	0.68032871	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	2	3	53.938	53.145	2;3	2.7106E-10	47117	160511_QHF_FH_JSI11i_3	143.42	119.57			0.98363	0.91677	15.174	10	3	Median	1.0233	0.86348	3.8442	2	2	Median	0.96382	1.0985	20.008	3	1	Median	1.1332	1.0915	18.741	2	0	Median	0.81565	0.83482	6.7825	3	0	Plateau	2357600000	1145600000	1211900000	741150000	331240000	409920000	397170000	196970000	200210000	741930000	375780000	366150000	477310000	241630000	235680000	43648	1702	41089	265003;265004;265005;265006;265007;265008;265009;265010;265011;265012	355439;355440;355441;355442;355443;355444;355445;355446;355447;355448;355449;355450;355451;355452;355453;355454;355455;355456;355457	355442			19	
RMVSSYVGENAEFER	0	Unmodified	1772.8152	0.8151827	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							3	2			41.134	39.91	3	5.3093E-05	32697	160511_QHF_FH_JSI9i_3	85.988	78.58			0.98041	1.0201	17.972	5	1	Median	1.6463	1.351	24.037	3	1	Plateau	0.83015	0.98424	5.0599	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	418490000	176600000	241890000	349570000	142800000	206770000	68918000	33806000	35112000	0	0	0	0	0	0	43649	1865	41090	265013;265014;265015;265016;265017	355458;355459;355460;355461;355462	355459			5	
RMVVPAALK	1	Unmodified	983.59501	0.59500658	1497	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			35.539	34.098	2;3	0.0033315	28478	160511_QHF_FH_JSI10i_3	46.158	29.955			0.97479	0.96037	13.192	2	1	Median	1.287	1.0543	NaN	1	1	Median	0.73831	0.87484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114880000	60197000	54680000	19966000	11293000	8673000	94911000	48904000	46007000	0	0	0	0	0	0	43650	1497	41091	265018;265019;265020	355463;355464;355465;355466	355463			4	
RNAAPPPSNTEAPPGETR	0	Unmodified	1860.9078	0.90783753	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				14.575	13.594	3	8.6577E-09	10660	160511_QHF_FH_JSI9i_3	112.56	108.94			1.2863	1.0641	NaN	1	0	Median	1.2863	1.0641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35401000	12947000	22455000	35401000	12947000	22455000	0	0	0	0	0	0	0	0	0	43651	4603	41092	265021	355467	355467			1	
RNAEFLTCNIPTSNASNNMVTTEK	1	Unmodified	2711.2643	0.26431291	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.824	57.289	3	4.1987E-06	47011	160511_QHF_FH_JSI9i_3	58.015	50.654			1.0687	0.86917	NaN	1	0	Median	1.0687	0.86917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26934000	13209000	13726000	26934000	13209000	13726000	0	0	0	0	0	0	0	0	0	43652	1857	41093	265022	355468;355469	355468			2	
RNDFQLIGIQDGYLSLLQDSGEVR	0	Unmodified	2735.3879	0.38785716	2060	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.5	6.6		3	2						3	2	3	2	1	98.113	95.069	3	5.5905E-27	47154	160513_QHF_FH_JSI9Kac_6	139.73	112.41			0.93456	0.95745	18.499	8	1	Median	1.4558	1.2142	29.374	2	0	Median	0.83036	1.0239	11.946	3	1	Plateau	0.93456	0.91261	2.915	2	0	Median	0.98304	0.984	NaN	1	0	Median	2229100000	1163000000	1066100000	565830000	248520000	317300000	1033900000	596020000	437900000	434860000	222600000	212260000	194480000	95868000	98609000	43653	2060	41094	265023;265024;265025;265026;265027;265028;265029;265030	355470;355471;355472;355473;355474;355475	355474			5	
RNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGK	1	Unmodified	4058.0709	0.070886702	2060	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	yes	yes	0	0	0	3	By MS/MS			By MS/MS	16	0									2	1			1	94.967	85.74	4;5	3.1702E-22	46612	160513_QHF_FH_JSI12Kac_6	130.69	117.73			1.0863	1.0259	6.4986	2	1	Median	1.1518	0.97978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0245	1.0741	NaN	1	1	Median	272940000	124440000	148500000	224690000	94095000	130600000	0	0	0	0	0	0	48247000	30343000	17903000	43654	2060	41095	265031;265032	355476;355477	355477			2	
RNDLPETAVIGLLWTCIMNAVEWNK	1	Unmodified	2942.4783	0.47826885	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.62	96.902	3	6.3549E-34	57308	160513_QHF_FH_JSI10Kac_6	153.17	146.37			1.5953	1.8966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5953	1.8966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77953000	37515000	40438000	0	0	0	77953000	37515000	40438000	0	0	0	0	0	0	43655	5722	41096	265033	355478	355478			1	
RNDSIIVDIFHGLFK	1	Unmodified	1772.9574	0.95735391	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.394	87.674	3	0.0022588	50315	160513_QHF_FH_JSI10Kac_6	61.815	42.492			0.68696	0.80711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68696	0.80711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46179000	28642000	17536000	0	0	0	46179000	28642000	17536000	0	0	0	0	0	0	43656	5626	41097	265034	355479	355479			1	
RNEDEDSPNK	1	Unmodified	1202.5164	0.51635814	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.41	0.491	32	22								21	11	10	12	1.7133	1.3678	2;3	1.3188E-09	833	160511_QHF_FH_JSI10i_1	152.54	111.51			1.1087	1.0703	80.166	47	9	Median	0.96416	0.79252	40.632	19	3	Median	3.2286	3.7809	81.255	8	2	Median	2.363	2.321	62.552	9	2	Median	1.1479	1.2119	62.268	11	2	Median	1789400000	690860000	1098500000	297870000	146560000	151320000	322550000	82329000	240220000	554050000	187750000	366300000	614910000	274230000	340680000	43657	2035	41098	265035;265036;265037;265038;265039;265040;265041;265042;265043;265044;265045;265046;265047;265048;265049;265050;265051;265052;265053;265054;265055;265056;265057;265058;265059;265060;265061;265062;265063;265064;265065;265066;265067;265068;265069;265070;265071;265072;265073;265074;265075;265076;265077;265078;265079;265080;265081;265082;265083;265084;265085;265086;265087;265088	355480;355481;355482;355483;355484;355485;355486;355487;355488;355489;355490;355491;355492;355493;355494;355495;355496;355497;355498;355499;355500;355501;355502;355503;355504;355505;355506;355507;355508;355509;355510;355511;355512;355513;355514;355515;355516;355517;355518;355519;355520;355521;355522;355523;355524;355525	355496			46	
RNEFLGELQK	1	Unmodified	1232.6513	0.65133548	2498	Q14141;Q9NVA2	SEPT6;SEPT11	Septin-6;Septin-11	yes	no	0	0	0	1		By MS/MS	By MS/MS		3	0			4								2	2		39.469	38.717	2;3	0.00033975	33868	160511_QHF_FH_JSI11i_3	76.655	6.6759			1.4884	1.5584	42.598	4	2	Median	NaN	NaN	NaN	0	0	Median	1.135	1.3056	29.098	2	0	Median	2.2381	2.1184	47.477	2	2	Median	NaN	NaN	NaN	0	0	Median	622030000	215400000	406630000	0	0	0	160990000	63876000	97118000	461030000	151520000	309510000	0	0	0	43658	2498	41099	265089;265090;265091;265092	355526;355527;355528;355529;355530	355527			5	
RNEIDAEPPAK	1	Unmodified	1238.6255	0.62551466	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.97	2	8	4				2			2	4	5	5	15.849	14.437	2;3	2.9452E-09	12030	160511_QHF_FH_JSI10i_2	127.42	87.379			0.92891	0.97921	8.4417	16	1	Median	1.1518	0.98468	3.93	2	0	Median	0.80582	0.97335	14.001	4	0	Median	1.0785	1.0153	8.757	5	0	Median	0.90231	0.96539	5.7053	5	1	Median	1878200000	983510000	894720000	252830000	127130000	125710000	229380000	123610000	105780000	881370000	464380000	416990000	514640000	268390000	246250000	43659	3723	41100	265093;265094;265095;265096;265097;265098;265099;265100;265101;265102;265103;265104;265105;265106;265107;265108	355531;355532;355533;355534;355535;355536;355537;355538;355539;355540;355541;355542;355543;355544;355545;355546;355547;355548;355549;355550;355551;355552;355553;355554;355555;355556	355552			26	
RNEIWLLK	1	Unmodified	1070.6237	0.62366417	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	1	By matching	By MS/MS			6.25	5.63			3						1	1	3			56.558	53.288	2;3	0.0036211	28997	160513_QHF_FH_JSI10Kac_6	57.96	36.496			0.98646	1.0172	23.318	4	1	Median	1.1273	0.89795	NaN	1	0	Median	0.86323	1.0241	23.659	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168220000	81731000	86488000	52846000	24537000	28309000	115370000	57194000	58180000	0	0	0	0	0	0	43660	4965	41101	265109;265110;265111;265112	355557;355558;355559	355559			2	
RNELVIR	0	Unmodified	898.53485	0.53484916	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							2	1	2		16.439	15.57	2;3	0.0027449	12480	160511_QHF_FH_JSI9i_3	68.915	28.812			1.7705	1.4224	61.646	4	2	Median	1.7705	1.4224	37.046	2	1	Median	0.82847	0.96892	NaN	1	0	Median	3.6537	3.7532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1275100000	510340000	764780000	867880000	339400000	528480000	249170000	139980000	109190000	158070000	30954000	127110000	0	0	0	43661	1000	41102	265113;265114;265115;265116;265117	355560;355561;355562;355563;355564;355565;355566	355565			7	
RNENQLIIFADDTYPR	0	Unmodified	1963.9752	0.97518882	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		67.711	67.711	3	0.00018198	60330	160511_QHF_FH_JSI11i_3	63.145	52.511			1.0591	0.99026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0591	0.99026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95232000	49383000	45850000	0	0	0	0	0	0	95232000	49383000	45850000	0	0	0	43662	2665	41103	265118	355567	355567			1	
RNFILDQTNVSAAAQR	0	Unmodified	1802.9387	0.93874373	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	1	By MS/MS	By MS/MS			5.6	5.2			4						1	3	2			51.394	48.29	3	4.3327E-06	40430	160511_QHF_FH_JSI10i_3	95.347	79.833			0.86923	0.96423	22.295	5	4	Median	0.83629	0.6785	26.879	3	2	Plateau	0.83903	0.99945	5.0733	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	368740000	189250000	179500000	183280000	93945000	89332000	185470000	95302000	90164000	0	0	0	0	0	0	43663	2161	41104	265119;265120;265121;265122;265123	355568;355569;355570;355571;355572;355573	355568			5	
RNFLELTELK	1	Unmodified	1261.703	0.7030367	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		64.134	63.131	2;3	2.2513E-06	55855	160511_QHF_FH_JSI11i_3	91.549	74.607			0.84755	0.856	24.372	6	0	Median	1.2881	1.0737	14.984	2	0	Median	0.71724	0.82135	33.112	2	0	Median	0.78576	0.72523	6.381	2	0	Median	NaN	NaN	NaN	0	0	Median	212960000	104880000	108080000	65634000	31702000	33932000	50000000	25586000	24414000	97330000	47592000	49738000	0	0	0	43664	3926	41105	265124;265125;265126;265127;265128;265129	355574;355575;355576;355577;355578	355575			5	
RNFQEEQINTR	0	Unmodified	1433.7011	0.70113922	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			17.389	16.409	3	3.9559E-06	13054	160511_QHF_FH_JSI9i_3	105.03	87.526			1.3775	1.1568	6.5738	3	1	Median	1.43	1.2055	5.8283	2	1	Median	0.99551	1.1032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74284000	33125000	41159000	43861000	16765000	27095000	30423000	16359000	14064000	0	0	0	0	0	0	43665	3439	41106	265130;265131;265132	355579;355580;355581;355582	355580			4	
RNFYIIK	1	Unmodified	952.54944	0.54943659	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			43.778	35.163	3	0.029996	19496	160513_QHF_FH_JSI10Kac_6	40.103	20.317			0.8421	0.9922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8421	0.9922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4136600	2367400	1769300	0	0	0	4136600	2367400	1769300	0	0	0	0	0	0	43666	5549	41107	265133	355583	355583			1	
RNIPPYFVALVPQEEELDDQK	1	Unmodified	2499.2646	0.26455413	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							5	1			89.916	88.767	3	0.00091663	72288	160511_QHF_FH_JSI9i_3	45.704	35.446			1.0207	0.87768	15.483	3	2	Median	1.0207	0.87768	15.483	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29878000	17014000	12864000	29878000	17014000	12864000	0	0	0	0	0	0	0	0	0	43667	1023	41108	265134;265135;265136;265137;265138;265139	355584;355585;355586;355587;355588;355589	355587			5	
RNIQQYNSFVSLSV	0	Unmodified	1653.8475	0.84746911	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			72.654	71.521	2	0.0002185	59921	160511_QHF_FH_JSI10i_3	88.681	79.248			0.80223	0.76826	18.649	4	1	Median	1.0268	0.85691	12.459	2	0	Median	0.56696	0.66897	16.584	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92981000	50340000	42641000	49048000	24554000	24494000	43932000	25786000	18147000	0	0	0	0	0	0	43668	977	41109	265140;265141;265142;265143	355590;355591;355592;355593;355594;355595	355590			6	
RNIYLMDTSGK	1	Unmodified	1296.6496	0.64962092	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS		7.33	6.13			2						1		2	1		36.925	31.916	2;3	0.0026409	27137	160511_QHF_FH_JSI11i_3	50.149	40.955			0.63962	0.7399	55.991	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63962	0.7399	55.991	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32980000	22307000	10673000	0	0	0	32980000	22307000	10673000	0	0	0	0	0	0	43669	1293	41110	265144;265145;265146	355596;355597;355598	355596			2	
RNKLDHYAIIK	2	Acetyl (K)	1411.7936	0.79358305	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	1	0	0	2		By matching	By MS/MS		16	0									2		1	1		48.492	39.336	4	0.0016962	21557	160513_QHF_FH_JSI11Kac_6	66.267	55.008			0.58965	0.6241	52.195	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76356	0.90269	NaN	1	0	Median	0.45536	0.43149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16034000	9917400	6117000	0	0	0	6105000	3547100	2557900	9929400	6370300	3559000	0	0	0	43670	2017	41111	265147;265148	355599	355599	2049;2050		1	
RNLFAFFDMAYQGFASGDGDK	1	Unmodified	2356.0583	0.058266521	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	93.794	86.213	3	0.0011162	50197	160513_QHF_FH_JSI10Kac_6	72.058	64.066			1.0428	1.1971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0428	1.1971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90463000	31861000	58602000	0	0	0	60089000	31861000	28228000	0	0	0	30374000	0	30374000	43671	773	41112	265149;265150	355600;355601	355601			2	
RNLGSINTELQDVQR	0	Unmodified	1741.9071	0.90710925	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			45.592	44.01	3	3.4378E-30	35996	160511_QHF_FH_JSI9i_3	160.78	142.32			0.96023	0.9395	3.5508	2	0	Median	1.0973	0.9162	NaN	1	0	Median	0.84026	0.96339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153170000	78666000	74506000	103560000	50998000	52557000	49617000	27668000	21949000	0	0	0	0	0	0	43672	520	41113	265151;265152	355602;355603	355603			2	
RNNGVVDK	1	Unmodified	900.47773	0.47772821	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			4.6996	4.2114	2;3	0.0024321	2077	160511_QHF_FH_JSI10i_3	80.438	53.476			0.5014	0.48095	54.803	4	0	Median	0.39274	0.32508	2.7286	2	0	Median	0.71194	0.81746	22.353	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	395200000	271850000	123350000	218360000	163210000	55156000	176830000	108640000	68189000	0	0	0	0	0	0	43673	1381	41114	265153;265154;265155;265156	355604;355605;355606;355607	355604			4	
RNPDELAEALDER	0	Unmodified	1526.7325	0.73249893	217	O14908	GIPC1	PDZ domain-containing protein GIPC1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		43.684	43.684	2	0.017936	38539	160511_QHF_FH_JSI11i_3	45.973	21.591			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43674	217	41115	265157	355608	355608			1	
RNPDTQWITK	1	Unmodified	1257.6466	0.64658446	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.79	0.406		5	19							12	7	5		28.044	27.019	2;3	1.9871E-06	22776	160511_QHF_FH_JSI11i_3	111.86	84.552			0.74773	0.67549	76.612	24	8	Median	0.79033	0.67909	81.659	12	5	Median	0.42013	0.52086	75.024	7	3	Median	0.67521	0.67427	75.384	5	0	Median	NaN	NaN	NaN	0	0	Median	3575200000	1662500000	1912700000	2230200000	1009000000	1221200000	866000000	425400000	440600000	479020000	228120000	250890000	0	0	0	43675	1951	41116	265158;265159;265160;265161;265162;265163;265164;265165;265166;265167;265168;265169;265170;265171;265172;265173;265174;265175;265176;265177;265178;265179;265180;265181	355609;355610;355611;355612;355613;355614;355615;355616;355617;355618;355619;355620;355621;355622;355623;355624;355625;355626;355627;355628;355629;355630;355631;355632;355633;355634;355635;355636;355637	355609			29	
RNPDTQWITKPVHK	2	Acetyl (K)	1760.9322	0.93220179	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	50.258	40.974	3;4	0.00036007	22436	160513_QHF_FH_JSI10Kac_6	82.908	71.793			0.54894	0.58814	114.78	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3873	1.6219	8.6353	2	0	Median	0.22611	0.2226	2.5778	2	0	Median	NaN	NaN	NaN	0	0	Median	145940000	86580000	59359000	0	0	0	84923000	36790000	48133000	58004000	46778000	11226000	3012000	3012000	0	43676	1951	41117	265182;265183;265184;265185;265186	355638;355639;355640;355641;355642;355643	355641	1967		6	
RNPEMLK	1	Unmodified	886.46947	0.46947171	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.83	0.373		1	5							4	2			10.488	9.8375	2;3	0.0068622	7352	160511_QHF_FH_JSI9i_3	53.166	25.642			1.3192	1.1722	13.409	5	2	Median	1.4647	1.1722	14.925	3	2	Median	0.95988	1.1173	10.137	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	391460000	181550000	209910000	170360000	66856000	103510000	221100000	114690000	106400000	0	0	0	0	0	0	43677	5593	41118	265187;265188;265189;265190;265191;265192	355644;355645;355646;355647;355648;355649	355647			6	
RNQDLAPNSAEQASILSLVTK	1	Unmodified	2254.1917	0.19172353	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	79.692	78.977	3	1.8516E-22	65153	160511_QHF_FH_JSI9i_3	157.73	153.11			0.88198	1.0322	17.436	7	0	Median	1.3008	1.1024	7.8688	2	0	Median	0.88428	1.0483	2.1922	2	0	Median	0.86134	0.84371	0.81716	2	0	Median	0.68666	0.71099	NaN	1	0	Median	1898100000	901420000	996660000	603300000	236170000	367130000	957210000	492480000	464730000	300180000	154900000	145280000	37370000	17861000	19509000	43678	2324	41119	265193;265194;265195;265196;265197;265198;265199	355650;355651;355652;355653;355654;355655;355656;355657;355658;355659;355660;355661;355662;355663;355664;355665;355666;355667;355668;355669;355670;355671;355672;355673;355674	355661			25	
RNQELLQSQLTEK	1	Unmodified	1585.8424	0.84238373	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		33.061	32.097	3	1.8011E-05	26768	160511_QHF_FH_JSI10i_3	84.468	77.74			0.95215	0.91074	26.164	4	0	Median	0.91753	0.75602	9.2179	2	0	Median	0.97131	1.1462	15.403	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	308430000	149850000	158580000	132010000	51819000	80191000	162060000	83673000	78387000	14363000	14363000	0	0	0	0	43679	446	41120	265200;265201;265202;265203;265204	355675;355676;355677;355678;355679;355680;355681;355682;355683;355684	355676			10	
RNQNSQISTEK	1	Unmodified	1303.648	0.64804102	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				5.3791	4.8797	2;3	1.2534E-07	2840	160511_QHF_FH_JSI9i_3	95.477	86.045			1.2398	1.0018	13.609	2	0	Median	1.2398	1.0018	13.609	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145900000	62339000	83558000	145900000	62339000	83558000	0	0	0	0	0	0	0	0	0	43680	475	41121	265205;265206	355685;355686;355687	355685			3	
RNQSFCPTVNLDK	1	Unmodified	1577.762	0.76202492	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.33	0.471		2	1								2	1		38.286	37.643	3	0.0021512	33110	160511_QHF_FH_JSI10i_2	57.434	48.152			1.5148	1.4203	26.03	3	3	Median	NaN	NaN	NaN	0	0	Median	1.1819	1.4168	36.812	2	2	Median	1.5327	1.4203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	149220000	60653000	88570000	0	0	0	105450000	43110000	62340000	43773000	17543000	26230000	0	0	0	43681	1589	41122	265207;265208;265209	355688;355689;355690	355690			3	
RNSGLSKEQK	2	Acetyl (K)	1187.6258	0.62584901	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	1	0	0	2		By MS/MS		By MS/MS	16	0									2		1		1	8.5214	1.6189	3	0.0032563	3023	160513_QHF_FH_JSI12Kac_6	72.2	29.457			0.79567	0.8976	17.326	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85925	1.0146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73679	0.7941	NaN	1	0	Median	23322000	12217000	11105000	0	0	0	16813000	8415700	8397100	0	0	0	6509500	3801700	2707800	43682	666	41123	265210;265211	355691;355692;355693;355694	355692	331		4	
RNSTIPTK	1	Unmodified	915.51378	0.51377937	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.67		1	2						3	2	2	1	1	7.0057	3.3167	2;3	0.0077417	3942	160511_QHF_FH_JSI9i_3	58.981	26.14			0.81943	0.93216	17.301	6	0	Median	1.1749	0.96307	4.3868	2	0	Median	0.78709	0.927	1.1461	2	0	Median	0.61089	0.61986	NaN	1	0	Median	0.84977	0.93067	NaN	1	0	Median	3005800000	1508700000	1497100000	1451300000	688780000	762520000	1325500000	688960000	636510000	219740000	125490000	94242000	9285300	5464100	3821100	43683	954;1416	41124	265212;265213;265214;265215;265216;265217	355695;355696;355697;355698;355699	355697			4	
RNTELETLLAK	1	Unmodified	1286.7194	0.71941505	277	O15344	MID1	E3 ubiquitin-protein ligase Midline-1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		48.78	48.78	2	0.00045679	43058	160511_QHF_FH_JSI11i_3	70.942	50.241			1.0577	0.98505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0577	0.98505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53659000	29723000	23936000	0	0	0	0	0	0	53659000	29723000	23936000	0	0	0	43684	277	41125	265218	355700	355700			1	
RNTNSVPETAPAAIPETK	1	Unmodified	1894.9749	0.97485447	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.71		3	2					2		1	2	3	1	38.008	34.546	3	6.6323E-06	28767	160511_QHF_FH_JSI10i_3	64.249	60.346			1.0473	1.0385	15.571	7	1	Median	1.1393	1.0015	NaN	1	0	Median	0.90567	1.0699	4.2227	2	0	Median	1.0473	0.99503	24.576	3	1	Median	1.0994	1.1716	NaN	1	0	Median	485740000	245390000	240350000	126890000	55536000	71355000	240980000	126850000	114130000	115730000	62111000	53615000	2143900	895740	1248100	43685	1857	41126	265219;265220;265221;265222;265223;265224;265225	355701;355702;355703;355704;355705;355706;355707;355708;355709;355710;355711;355712;355713;355714	355704			14	
RNTTIPTK	1	Unmodified	929.52943	0.52942943	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							3	3	3	2	7.7649	7.4168	2;3	0.00081129	5103	160511_QHF_FH_JSI9i_3	66.27	55.56			0.96519	0.80559	17.288	11	0	Median	0.98977	0.80466	3.0495	3	0	Plateau	0.63134	0.73209	14.14	3	0	Plateau	1.055	0.9931	5.4044	3	0	Plateau	0.91617	0.97948	39.908	2	0	Median	8242100000	4103200000	4138900000	4136400000	1959200000	2177200000	3162000000	1617900000	1544100000	862780000	484250000	378530000	80928000	41850000	39078000	43686	985;1827	41127	265226;265227;265228;265229;265230;265231;265232;265233;265234;265235;265236	355715;355716;355717;355718;355719;355720;355721;355722;355723;355724;355725;355726;355727	355720			13	
RNVEGQDMLYQSLK	1	Unmodified	1679.8301	0.83010449	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							3	4	5	2	46.942	46.253	2;3	2.6174E-05	39266	160511_QHF_FH_JSI12i_3	90.476	83.437			0.86932	0.90348	7.3117	14	7	Median	1.0151	0.86347	5.89	3	2	Median	0.75945	0.91317	8.555	4	3	Median	0.93483	0.91205	6.1305	5	2	Median	0.80478	0.8376	9.7134	2	0	Median	2085300000	1152300000	933060000	325810000	162320000	163500000	535310000	297740000	237570000	966230000	523260000	442970000	257980000	168950000	89023000	43687	2046;2296	41128	265237;265238;265239;265240;265241;265242;265243;265244;265245;265246;265247;265248;265249;265250	355728;355729;355730;355731;355732;355733;355734;355735;355736;355737;355738;355739;355740;355741;355742;355743;355744;355745;355746;355747;355748	355748			21	
RNVEGQDMLYQSLK	1	Oxidation (M)	1695.825	0.82501911	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	34.919	34.919	3	0.00078654	29628	160511_QHF_FH_JSI12i_3	58.071	46.095			0.69177	0.64307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69177	0.64307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31503000	21150000	10353000	0	0	0	0	0	0	31503000	21150000	10353000	0	0	0	43688	2046;2296	41128	265251;265252	355749;355750	355750		1715	2	
RNVESGEEELASK	1	Unmodified	1446.6951	0.69505079	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	15.342	14.94	2;3	0.00059866	12391	160511_QHF_FH_JSI9i_2	65.038	51.902			0.82366	0.85052	39.28	7	7	Median	0.5237	0.44127	25.519	2	2	Median	0.71935	0.88013	21.121	2	2	Median	1.0749	1.0064	11.603	2	2	Median	0.86048	0.85052	NaN	1	1	Median	683180000	418330000	264850000	207930000	136810000	71121000	187300000	117760000	69540000	260210000	150890000	109330000	27745000	12883000	14862000	43689	4114	41129	265253;265254;265255;265256;265257;265258;265259	355751;355752;355753;355754;355755;355756;355757	355753			7	
RNVIFQPVAELK	1	Unmodified	1412.814	0.81398414	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		58.049	56.817	2;3	0.010394	47605	160511_QHF_FH_JSI10i_3	47.938	31.714			0.82746	0.89583	11.894	5	0	Median	1.0905	0.89343	0.37987	2	0	Median	0.80581	0.92436	2.0928	2	0	Median	0.77659	0.69919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243200000	121270000	121930000	117910000	59018000	58895000	85215000	42214000	43001000	40073000	20038000	20035000	0	0	0	43690	2176	41130	265260;265261;265262;265263;265264	355758;355759;355760;355761;355762	355758			3	
RNVSAPESR	0	Unmodified	1014.5207	0.52065566	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.6761	5.1531	2	0.0017312	3165	160511_QHF_FH_JSI9i_3	67.897	49.115			1.0346	0.86153	NaN	1	0	Median	1.0346	0.86153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33372000	15678000	17694000	33372000	15678000	17694000	0	0	0	0	0	0	0	0	0	43691	4811	41131	265265	355763	355763			1	
RNVTVQPDDPISFMQLTAK	1	Unmodified	2159.1045	0.10448843	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		81.96	80.99	2;3	1.8888E-05	66582	160511_QHF_FH_JSI9i_3	72.585	60.517			1.3833	1.2174	19.824	4	2	Linear	1.5224	1.2234	NaN	1	0	Median	1.0821	1.2685	6.5066	2	1	Median	0.89545	0.85042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	546280000	237350000	308930000	194980000	77941000	117040000	326390000	143400000	182990000	24913000	16010000	8902900	0	0	0	43692	1804	41132	265266;265267;265268;265269	355764;355765;355766;355767;355768	355768			5	
RNVTVQPDDPISFMQLTAK	1	Oxidation (M)	2175.0994	0.099403054	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	1		By MS/MS			3	0			2								2			67.432	65.942	3	2.8371E-05	55443	160511_QHF_FH_JSI10i_3	71.073	61.977			0.29897	0.35287	81.064	2	1	Median	NaN	NaN	NaN	0	0	Median	0.29897	0.35287	81.064	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82626000	62741000	19885000	0	0	0	82626000	62741000	19885000	0	0	0	0	0	0	43693	1804	41132	265270;265271	355769;355770;355771;355772	355770		1491	4	
RNVYDLTSIPVR	0	Unmodified	1431.7834	0.78341229	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			57.62	56.076	3	0.011739	46916	160511_QHF_FH_JSI10i_3	53.252	46.122			1.6834	1.6247	11.242	2	0	Median	1.8438	1.5006	NaN	1	0	Median	1.537	1.7592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137120000	57259000	79865000	77083000	31236000	45847000	60041000	26023000	34018000	0	0	0	0	0	0	43694	5442	41133	265272;265273	355773;355774	355773			0	
RPAEDMEEEQAFK	1	Oxidation (M)	1594.6933	0.69333623	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.84	2.57	3	10	11					1		3	4	9	9	20.512	20.194	2;3	1.021E-05	13105	160511_QHF_FH_JSI12i_3	117.92	111.62			1.0418	0.99893	34.161	22	0	Median	1.5013	1.2794	35.519	3	0	Plateau	0.59115	0.96532	20.388	4	0	Linear	1.074	0.99929	39.421	9	0	Median	0.95721	0.98043	39.462	6	0	Median	3104800000	1416900000	1687900000	308490000	115740000	192740000	502290000	252160000	250130000	1631600000	734630000	896920000	662500000	314390000	348110000	43695	1975	41134	265274;265275;265276;265277;265278;265279;265280;265281;265282;265283;265284;265285;265286;265287;265288;265289;265290;265291;265292;265293;265294;265295;265296;265297;265298	355775;355776;355777;355778;355779;355780;355781;355782;355783;355784;355785;355786;355787;355788;355789;355790;355791;355792;355793;355794;355795;355796;355797;355798	355793		1641	23	
RPAEDMEEEQAFK	1	Unmodified	1578.6984	0.69842161	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	5.61	4	8	7				2	5		5	7	7	7	28.62	25.531	2;3	6.4506E-11	21978	160511_QHF_FH_JSI10i_2	125.61	106.78			0.99394	1.0376	15.403	26	0	Median	1.0629	0.87758	13.502	5	0	Median	0.97387	1.1099	11.554	7	0	Median	0.97698	0.99351	12.387	7	0	Median	1.0251	1.0696	10.668	7	0	Median	13213000000	6648300000	6565000000	2006700000	948940000	1057700000	2270800000	1191200000	1079600000	5907700000	2985600000	2922100000	3028200000	1522600000	1505600000	43696	1975	41134	265299;265300;265301;265302;265303;265304;265305;265306;265307;265308;265309;265310;265311;265312;265313;265314;265315;265316;265317;265318;265319;265320;265321;265322;265323;265324	355799;355800;355801;355802;355803;355804;355805;355806;355807;355808;355809;355810;355811;355812;355813;355814;355815;355816;355817;355818;355819;355820;355821;355822;355823;355824;355825;355826;355827;355828;355829;355830;355831;355832;355833;355834;355835;355836;355837;355838;355839;355840;355841;355842;355843;355844;355845;355846;355847;355848;355849;355850;355851;355852;355853;355854;355855;355856;355857;355858;355859;355860	355848			61	
RPAEDMEEEQAFKR	1	Acetyl (K)	1776.8101	0.81009732	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4		1	1	1	2	42.034	32.05	3	0.0010853	18342	160513_QHF_FH_JSI11Kac_5	78.505	70.329			1.0181	1.2078	37.187	5	0	Median	1.5706	1.31	NaN	1	0	Median	1.0181	1.2078	NaN	1	0	Median	0.59375	0.58863	NaN	1	0	Median	1.0208	1.1088	38.217	2	0	Median	38160000	19775000	18385000	3105000	946030	2159000	9702900	4964700	4738200	15647000	8710500	6936800	9705100	5154000	4551000	43697	1975	41135	265325;265326;265327;265328;265329	355861;355862;355863	355862	1995		3	
RPAEDMEEEQAFKR	1	Unmodified	1734.7995	0.79953264	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	2	By MS/MS				2.67	0.471		1	2							3				22.995	21.803	3;4	0.00025002	17571	160511_QHF_FH_JSI9i_3	90.444	79.81			4.834	3.891	14.238	3	2	Median	4.834	3.891	14.238	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138390000	26832000	111560000	138390000	26832000	111560000	0	0	0	0	0	0	0	0	0	43698	1975	41135	265330;265331;265332	355864;355865;355866;355867	355865			4	
RPAEDMEEEQAFKR	1	Acetyl (K);Oxidation (M)	1792.805	0.80501195	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	1	0	1	2		By matching	By MS/MS	By MS/MS	14.8	0.373							1	5			1	2	3	32.461	23.139	3	0.0069172	14247	160513_QHF_FH_JSI12Kac_4	50.155	45.984			0.70585	0.81673	12.901	5	0	Median	NaN	NaN	NaN	0	0	Median	0.70585	0.82517	NaN	1	0	Median	0.70373	0.70543	NaN	1	0	Median	0.76049	0.81673	14.591	3	0	Median	13203000	8207700	4994800	0	0	0	1625700	954470	671240	3817300	2248500	1568800	7759500	5004800	2754700	43699	1975	41135	265333;265334;265335;265336;265337;265338	355868;355869;355870	355868	1995	1641	3	
RPAEPGGPQEPGLASSPPGR	0	Unmodified	1955.9813	0.98133683	4556	Q9BZC7	ABCA2	ATP-binding cassette sub-family A member 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.675	28.294	3	0.0069887	23066	160511_QHF_FH_JSI9i_3	36.454	27.635			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3810300	0	3810300	3810300	0	3810300	0	0	0	0	0	0	0	0	0	43700	4556	41136	265339	355871	355871			1	
RPAGPELQTPPGK	1	Unmodified	1346.7306	0.73064844	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			21.569	20.332	3	0.0025886	16597	160511_QHF_FH_JSI10i_3	47.915	36.277			0.90217	0.87209	6.3439	2	0	Median	1.1098	0.91211	NaN	1	0	Median	0.73339	0.83384	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57301000	30072000	27229000	23043000	11262000	11780000	34258000	18809000	15449000	0	0	0	0	0	0	43701	5538	41137	265340;265341	355872;355873;355874	355872			3	
RPAMLDNEADGNK	1	Unmodified	1429.662	0.66197652	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			15.253	14.26	3	2.8233E-05	11245	160511_QHF_FH_JSI9i_3	89.231	84.429			1.0279	1.0138	6.1089	2	0	Median	1.2812	1.0586	NaN	1	0	Median	0.82467	0.97098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88450000	42768000	45682000	71172000	33773000	37398000	17278000	8995100	8283400	0	0	0	0	0	0	43702	3922	41138	265342;265343	355875;355876;355877	355877			3	
RPAMLDNEADGNK	1	Oxidation (M)	1445.6569	0.65689115	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	1	1	By MS/MS	By matching			3	0			2							1	1			15.222	14.266	3	0.017281	11204	160511_QHF_FH_JSI9i_3	36.445	30.735			1.2049	1.1717	11.929	2	0	Median	1.3209	1.0769	NaN	1	0	Median	1.0991	1.2748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29262000	12934000	16328000	18562000	7569300	10993000	10700000	5364800	5334800	0	0	0	0	0	0	43703	3922	41138	265344;265345	355878	355878		2358	1	
RPCFSALTPDETYVPK	1	Unmodified	1879.9138	0.91383411	50	CON__P02769			yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			59.153	57.618	3	0.00032757	47266	160511_QHF_FH_JSI9i_3	60.918	48.895		+	0.78589	0.86461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78589	0.86461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29693000	16065000	13628000	0	0	0	29693000	16065000	13628000	0	0	0	0	0	0	43704	50	41139	265346;265347	355879;355880	355880			2	
RPDADLK	1	Unmodified	813.43447	0.43446642	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	6.2894	6.0552	2	0.017052	3816	160511_QHF_FH_JSI11i_3	62.546	24.988			0.96676	0.96443	21.7	7	0	Median	1.2545	1.0776	NaN	1	0	Median	0.71234	0.88556	NaN	1	0	Median	0.96676	0.91785	28.774	3	0	Plateau	0.82614	0.87996	12.963	2	0	Median	3933400000	2014000000	1919400000	345140000	155650000	189490000	400350000	235940000	164410000	1671600000	776940000	894680000	1516300000	845500000	670780000	43705	1299	41140	265348;265349;265350;265351;265352;265353;265354	355881;355882;355883;355884;355885;355886;355887;355888;355889	355881			9	
RPDFAQQQAMQQLTFDGK	1	Unmodified	2108.0109	0.010922397	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			60.622	59.098	3	1.8724E-07	48264	160511_QHF_FH_JSI9i_3	91.475	85.895			0.7945	0.92771	35.636	3	2	Plateau	0.56663	0.46232	NaN	1	1	Median	0.73807	0.82703	16.883	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80667000	54784000	25884000	18575000	12654000	5921400	62092000	42130000	19962000	0	0	0	0	0	0	43706	4591	41141	265355;265356;265357;265358	355890;355891;355892;355893	355893			4	
RPDFAQQQAMQQLTFDGKR	1	Acetyl (K)	2306.1226	0.12259811	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	70.508	61.56	3	1.2226E-17	33792	160513_QHF_FH_JSI10Kac_6	137.61	116.52			0.80014	0.94287	47.962	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.80014	0.94287	NaN	1	0	Median	2.3459	2.3672	NaN	1	1	Median	1.0916	1.1827	NaN	1	0	Median	52045000	26674000	25371000	0	0	0	35442000	19571000	15871000	4705000	540080	4164900	11898000	6563100	5335300	43707	4591	41142	265359;265360;265361	355894;355895;355896;355897	355897	3189		4	
RPDFAQQQAMQQLTFDGKR	1	Acetyl (K);Oxidation (M)	2322.1175	0.11751273	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	1	0	1	2				By MS/MS	16	0									1				1	59.555	49.669	3	0.05398	25966	160513_QHF_FH_JSI12Kac_6	44.089	39.736			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2664600	2664600	0	0	0	0	0	0	0	0	0	0	2664600	2664600	0	43708	4591	41142	265362	355898	355898	3189		1	
RPDLLTMVVDYR	0	Unmodified	1476.7759	0.77588407	2632	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			81.275	79.957	3	0.032401	67052	160511_QHF_FH_JSI10i_3	26.112	14.741			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43709	2632	41143	265363	355899	355899			1	
RPDLYALAMGYSGQLK	1	Unmodified	1781.9134	0.91344018	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	80.736	80.011	3	0.00016302	69360	160511_QHF_FH_JSI12i_3	64.507	58.476			0.99644	0.89039	13.336	4	1	Linear	1.4887	1.2256	NaN	1	1	Median	0.89939	1.0248	NaN	1	0	Median	1.104	0.99342	NaN	1	0	Median	0.88163	0.88844	NaN	1	0	Median	185780000	91142000	94634000	22425000	8497400	13927000	28689000	15029000	13660000	52546000	29023000	23523000	82116000	38593000	43523000	43710	3675	41144	265364;265365;265366;265367	355900;355901;355902	355902			2	
RPDLYGNLGHPLS	0	Unmodified	1437.7365	0.7364621	3372	Q86X76	NIT1	Nitrilase homolog 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	48.37	47.77	2	0.013626	42314	160511_QHF_FH_JSI11i_3	49.5	30.229			0.72126	0.78373	109.29	2	2	Median	NaN	NaN	NaN	0	0	Median	0.30002	0.36187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7339	1.6974	NaN	1	1	Median	53183000	21265000	31918000	0	0	0	7779800	5639900	2140000	0	0	0	45403000	15625000	29778000	43711	3372	41145	265368;265369;265370	355903;355904;355905	355903			3	
RPDQQLQGEGK	1	Unmodified	1254.6317	0.63166267	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.58	6	8	9				5	4		7	8	9	8	7.9761	5.2937	2;3	2.0776E-29	5074	160511_QHF_FH_JSI10i_1	183.99	164			0.92499	0.92301	18.729	32	7	Median	1.1576	0.98146	19.685	7	3	Median	0.89598	1.0451	21.967	8	1	Median	0.92299	0.90341	16.717	9	2	Median	0.8641	0.89805	14.781	8	1	Median	15306000000	7503300000	7803000000	2320700000	928840000	1391800000	3802100000	1929600000	1872500000	6145400000	2885900000	3259500000	3038200000	1759000000	1279200000	43712	3609	41146	265371;265372;265373;265374;265375;265376;265377;265378;265379;265380;265381;265382;265383;265384;265385;265386;265387;265388;265389;265390;265391;265392;265393;265394;265395;265396;265397;265398;265399;265400;265401;265402	355906;355907;355908;355909;355910;355911;355912;355913;355914;355915;355916;355917;355918;355919;355920;355921;355922;355923;355924;355925;355926;355927;355928;355929;355930;355931;355932;355933;355934;355935;355936;355937;355938;355939;355940;355941;355942;355943;355944;355945;355946;355947;355948;355949	355922			43	
RPDVTYVYDVAK	1	Unmodified	1424.73	0.72997974	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	46.745	46.456	2;3	6.5263E-05	40948	160511_QHF_FH_JSI11i_3	63.76	53.407			0.87467	0.87905	9.6278	5	1	Median	NaN	NaN	NaN	0	0	Median	0.633	0.77521	NaN	1	1	Median	1.0235	0.96068	0.47759	2	0	Median	0.79393	0.84681	5.2847	2	0	Median	281430000	150170000	131260000	0	0	0	31727000	20341000	11387000	119730000	63034000	56695000	129980000	66798000	63179000	43713	3727	41147	265403;265404;265405;265406;265407;265408	355950;355951;355952;355953;355954;355955;355956;355957;355958;355959;355960;355961	355954			12	
RPDVVENQPDAASQLNVDASGNLAK	1	Unmodified	2607.2889	0.2888714	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							2	2	3	4	53.425	52.747	3	4.1467E-24	47954	160511_QHF_FH_JSI12i_1	141.36	134.48			1.0186	0.98182	30.598	10	2	Median	1.1635	0.98153	2.58	2	0	Median	0.7576	0.91255	7.8087	2	1	Median	1.1023	1.0781	13.416	3	0	Plateau	1.0562	1.0886	59.234	3	1	Plateau	682810000	336760000	346040000	126640000	54825000	71818000	143540000	77737000	65805000	200320000	85115000	115200000	212310000	119090000	93218000	43714	5160	41148	265409;265410;265411;265412;265413;265414;265415;265416;265417;265418;265419	355962;355963;355964;355965;355966;355967;355968;355969;355970;355971;355972;355973;355974;355975;355976;355977;355978;355979;355980;355981;355982;355983;355984;355985;355986;355987;355988;355989	355970			28	
RPEAAQLLEDVQAALK	1	Unmodified	1750.9577	0.95774784	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		94.442	93.727	3	7.6246E-06	77027	160511_QHF_FH_JSI9i_3	84.842	73.581			0.66237	0.77465	39.677	4	1	Median	1.4126	1.1436	NaN	1	0	Median	0.66237	0.77465	19.629	2	0	Median	0.47991	0.45321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71862000	37239000	34624000	18389000	7586000	10803000	30929000	16199000	14730000	22544000	13454000	9090300	0	0	0	43715	1665	41149	265420;265421;265422;265423;265424	355990;355991;355992;355993;355994;355995;355996	355995			6	
RPEEWGK	1	Unmodified	900.44537	0.44536545	4370	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			9.0518	8.5771	3	0.060896	6589	160511_QHF_FH_JSI10i_2	21.528	1.3871			0.58748	0.72307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.58748	0.72307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46160000	23681000	22479000	0	0	0	46160000	23681000	22479000	0	0	0	0	0	0	43716	4370	41150	265425	355997	355997			1	
RPEGYNLK	1	Unmodified	975.51378	0.51377937	2052	P63151;Q00005;Q9Y2T4	PPP2R2A;PPP2R2B;PPP2R2C	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		10.798	10.349	2;3	0.0015852	7931	160511_QHF_FH_JSI9i_3	64.485	39.347			1.0093	1.1641	25.37	3	0	Median	1.8333	1.4678	NaN	1	0	Median	1.0093	1.1641	NaN	1	0	Median	0.92792	0.88421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	178620000	83705000	94920000	54139000	18466000	35673000	68378000	34469000	33910000	56108000	30771000	25337000	0	0	0	43717	2052	41151	265426;265427;265428;265429	355998;355999	355999			2	
RPEILVQPLK	1	Unmodified	1191.7339	0.7339429	2942	Q5T2T1	MPP7	MAGUK p55 subfamily member 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		44.409	43.357	3	0.00056856	35654	160511_QHF_FH_JSI9i_3	60.434	43.408			0.74142	0.89143	12.046	3	0	Plateau	1.1015	0.89143	NaN	1	0	Median	0.69765	0.80267	NaN	1	0	Median	0.74142	0.70102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101150000	54768000	46377000	36643000	17314000	19329000	33521000	19363000	14158000	30981000	18092000	12890000	0	0	0	43718	2942	41152	265430;265431;265432	356000;356001	356001			2	
RPELGVTLTK	1	Unmodified	1112.6554	0.65535823	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		34.383	33.661	2;3	0.00024277	29208	160511_QHF_FH_JSI11i_3	78.548	59.803			0.78539	0.69092	0.33127	2	1	Median	0.85433	0.68931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72202	0.69254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	396830000	235380000	161450000	84981000	44040000	40941000	0	0	0	311850000	191340000	120510000	0	0	0	43719	1601	41153	265433;265434	356002;356003	356002			2	
RPELLTHSTTEVTQPR	0	Unmodified	1863.9803	0.9802742	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1	By MS/MS	By MS/MS			5.6	5.2			4						1	4	1			30.656	29.274	3;4	2.3294E-11	23766	160511_QHF_FH_JSI9i_3	152.71	137.07			1.1487	0.92693	7.3307	3	1	Plateau	1.1298	0.9212	2.743	2	0	Median	0.73426	0.81504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195730000	97185000	98543000	165220000	76937000	88287000	30504000	20248000	10256000	0	0	0	0	0	0	43720	2087	41154	265435;265436;265437;265438;265439	356004;356005;356006;356007;356008;356009;356010;356011	356007			8	
RPEVDGEK	1	Unmodified	928.46141	0.46140945	5528	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	5.0124	5.0586	2	0.019269	2766	160511_QHF_FH_JSI11i_3	47.198	12.39			0.98326	0.95331	27.348	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2554	1.1567	NaN	1	0	Median	0.77011	0.78569	NaN	1	0	Median	183310000	85819000	97488000	0	0	0	0	0	0	136880000	64052000	72827000	46429000	21768000	24661000	43721	5528	41155	265440;265441	356012	356012			1	
RPEVPFPEITR	0	Unmodified	1339.7248	0.72483478	4882	Q9NP66	HMG20A	High mobility group protein 20A	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				55.312	53.746	3	0.042978	44053	160511_QHF_FH_JSI9i_3	16.223	12.905			1.221	1.0155	NaN	1	0	Median	1.221	1.0155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13094000	6755100	6338800	13094000	6755100	6338800	0	0	0	0	0	0	0	0	0	43722	4882	41156	265442	356013	356013			1	
RPFDPNDR	0	Unmodified	1015.4835	0.48354187	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			10.193	9.5565	3	0.0029527	7078	160511_QHF_FH_JSI9i_3	47.706	44.134			1.0009	0.98294	2.6907	2	0	Median	1.1947	0.96441	NaN	1	0	Median	0.83856	1.0018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	269800000	119400000	150400000	177790000	68807000	108980000	92005000	50591000	41414000	0	0	0	0	0	0	43723	2745	41157	265443;265444	356014;356015;356016	356016			3	
RPFGVSLLYIGWDK	1	Unmodified	1649.893	0.89296274	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	85.579	78.232	2;3	0.00030052	42517	160513_QHF_FH_JSI9Kac_6	72.417	65.584			0.68222	0.76242	8.8944	4	0	Median	0.98752	0.84499	NaN	1	0	Median	0.61829	0.72946	9.3708	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70491	0.74577	NaN	1	0	Median	863130000	506850000	356280000	228680000	114300000	114380000	587630000	361940000	225690000	0	0	0	46813000	30612000	16202000	43724	1267	41158	265445;265446;265447;265448	356017;356018;356019;356020;356021;356022;356023	356018			6	
RPGAFAIYLEPWHLDIFEFLDLKK	2	Unmodified	2917.5531	0.55307199	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			97.418	91.697	5	3.2381E-22	53369	160513_QHF_FH_JSI10Kac_6	126.97	120.33			0.65659	0.78441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65659	0.78441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	317720000	196650000	121070000	0	0	0	317720000	196650000	121070000	0	0	0	0	0	0	43725	1242	41159	265449	356024;356025	356025			2	
RPGEEGTVMSLAGK	1	Oxidation (M)	1446.7137	0.71367774	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			4								2	2		26.329	25.918	3	0.0013057	30241	160511_QHF_FH_JSI11i_3	55.213	42.653			1.2316	0.8127	45.897	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72949	0.8127	NaN	1	0	Median	1.2316	1.1487	58.436	2	0	Median	NaN	NaN	NaN	0	0	Median	202360000	100390000	101980000	0	0	0	39638000	23573000	16065000	162720000	76813000	85912000	0	0	0	43726	754	41160	265450;265451;265452;265453	356026;356027;356028;356029;356030	356027		258	5	
RPGEEGTVMSLAGK	1	Unmodified	1430.7188	0.71876312	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		6	8					1	3	5	5	7	1	37.501	34.891	2;3	4.2844E-07	29023	160511_QHF_FH_JSI10i_3	131.66	125.63			0.8719	0.86942	47.073	18	7	Median	1.0656	0.91456	10.062	5	1	Median	0.72797	0.86592	6.0132	5	1	Median	0.89431	0.85584	71.96	7	4	Median	0.76369	0.75677	NaN	1	1	Median	3106100000	1504200000	1601900000	529110000	259860000	269250000	950910000	521540000	429380000	1500200000	652660000	847580000	125860000	70138000	55719000	43727	754	41160	265454;265455;265456;265457;265458;265459;265460;265461;265462;265463;265464;265465;265466;265467;265468;265469;265470;265471	356031;356032;356033;356034;356035;356036;356037;356038;356039;356040;356041;356042;356043;356044;356045;356046;356047;356048;356049;356050;356051;356052;356053;356054	356036			24	
RPGQAPPDQEALQVVYER	0	Unmodified	2052.0389	0.038851707	5355	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.423	51.84	3	0.0067947	42458	160511_QHF_FH_JSI9i_3	44.089	34.34			1.5428	1.2608	NaN	1	1	Median	1.5428	1.2608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23532000	11020000	12512000	23532000	11020000	12512000	0	0	0	0	0	0	0	0	0	43728	5355	41161	265472	356055	356055			1	
RPGVTGENSNEVAK	1	Unmodified	1456.727	0.72701962	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			9.7594	9.1437	3	0.0039923	6790	160511_QHF_FH_JSI9i_3	50.305	39.451			0.86925	0.84897	14.613	2	1	Median	1.1619	0.94139	NaN	1	1	Median	0.65034	0.76563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47104000	21825000	25279000	31175000	12697000	18478000	15929000	9128400	6800900	0	0	0	0	0	0	43729	3260	41162	265473;265474	356056;356057	356057			2	
RPGYGAYDAFK	1	Unmodified	1243.5986	0.59857163	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		30.924	30.002	2;3	1.2155E-05	25055	160511_QHF_FH_JSI10i_3	77.74	66.911			0.85514	0.7933	8.4477	6	0	Median	1.0319	0.83026	9.3879	2	0	Median	0.75675	0.87145	13.152	2	0	Median	0.85514	0.7903	0.40247	2	0	Median	NaN	NaN	NaN	0	0	Median	618490000	323000000	295490000	268230000	132930000	135290000	165880000	94448000	71436000	184380000	95623000	88758000	0	0	0	43730	832	41163	265475;265476;265477;265478;265479;265480	356058;356059;356060;356061;356062;356063;356064;356065;356066;356067;356068;356069;356070;356071	356063			14	
RPISADSAIMNPASK	1	Unmodified	1556.7981	0.79807608	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.55	0.498		5	6							4	5	2		35.32	34.344	2;3	1.1164E-05	28552	160511_QHF_FH_JSI10i_3	106.38	95.107			1.0508	0.7941	16.182	10	4	Linear	1.0784	0.80348	14.085	4	1	Linear	0.84287	1.0128	16.939	4	1	Median	1.2106	1.1234	18.905	2	2	Median	NaN	NaN	NaN	0	0	Median	1650100000	813170000	836910000	831660000	372180000	459480000	556300000	311120000	245180000	262130000	129870000	132260000	0	0	0	43731	2155	41164	265481;265482;265483;265484;265485;265486;265487;265488;265489;265490;265491	356072;356073;356074;356075;356076;356077;356078;356079;356080;356081;356082;356083;356084;356085;356086;356087;356088;356089	356077			18	
RPISADSAIMNPASK	1	Oxidation (M)	1572.793	0.7929907	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		6	5.2			3					1		2	1	1		29.734	25.578	3	8.7501E-05	20937	160511_QHF_FH_JSI9i_3	82.529	72.993			1.0975	0.95012	19.538	3	1	Plateau	1.0975	0.91302	NaN	1	0	Median	0.8939	1.0524	NaN	1	0	Median	1.409	1.3435	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	157150000	83580000	73573000	100360000	51079000	49285000	54142000	31647000	22495000	2647000	853730	1793300	0	0	0	43732	2155	41164	265492;265493;265494;265495	356090;356091;356092;356093;356094;356095	356093		1801	6	
RPLDDGVGNQLGALVHQR	0	Unmodified	1944.029	0.028955723	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.065	56.52	3	0.051646	46413	160511_QHF_FH_JSI9i_3	24.594	16.343			0.5872	0.48605	NaN	1	1	Median	0.5872	0.48605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23353000	17529000	5823700	23353000	17529000	5823700	0	0	0	0	0	0	0	0	0	43733	4118	41165	265496	356096	356096			1	
RPLEATFDLGIPQAVLPPLPK	1	Unmodified	2271.2991	0.29908914	4947	Q9NR56	MBNL1	Muscleblind-like protein 1	yes	yes	0	0	0	1		By matching		By MS/MS	3	0			2								1		1	101.22	101.15	3	0.00049788	87856	160511_QHF_FH_JSI12i_3	45.369	36.312			0.76478	0.81626	12.612	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65326	0.74661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89534	0.89239	NaN	1	0	Median	195140000	102670000	92472000	0	0	0	38716000	20248000	18469000	0	0	0	156430000	82423000	74004000	43734	4947	41166	265497;265498	356097	356097			1	
RPLEDGDQPDAK	1	Unmodified	1339.6368	0.63680763	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	2.87	6	8	6					1		3	6	6	6	9.9985	9.2135	2;3	9.9592E-08	7117	160511_QHF_FH_JSI11i_3	137.17	92.031			0.92187	0.94039	10.138	20	1	Median	1.2303	1.0455	22.399	3	0	Plateau	0.75565	0.89018	8.8332	5	0	Median	0.97555	0.9601	9.7331	6	0	Median	0.92043	0.94759	2.7427	6	1	Median	2729800000	1363200000	1366600000	414360000	178710000	235650000	813280000	462610000	350670000	775410000	349400000	426000000	726800000	372490000	354320000	43735	3966	41167	265499;265500;265501;265502;265503;265504;265505;265506;265507;265508;265509;265510;265511;265512;265513;265514;265515;265516;265517;265518;265519	356098;356099;356100;356101;356102;356103;356104;356105;356106;356107;356108;356109;356110;356111;356112;356113;356114;356115;356116;356117;356118;356119;356120;356121;356122;356123;356124;356125;356126;356127;356128;356129;356130;356131;356132;356133;356134	356100			36	
RPLEDGDQPDAKK	2	Unmodified	1467.7318	0.73177065	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							2	3	3		8.0472	7.7168	2;3	0.00028057	5458	160511_QHF_FH_JSI11i_3	63.29	47.903			0.76479	0.8369	10.515	8	3	Median	1.0519	0.86967	5.0932	2	1	Median	0.7074	0.83489	11.027	3	0	Median	0.81074	0.76859	11.829	3	2	Median	NaN	NaN	NaN	0	0	Median	558210000	296900000	261310000	108250000	58428000	49824000	302120000	173610000	128520000	147840000	64862000	82973000	0	0	0	43736	3966	41168	265520;265521;265522;265523;265524;265525;265526;265527	356135;356136;356137;356138;356139;356140;356141;356142	356135			8	
RPLEMEQQQAYRPEMK	1	Unmodified	2032.9823	0.98226481	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			5							2	3			33.596	32.181	3;4	2.9353E-06	26216	160511_QHF_FH_JSI9i_3	121.79	113.31			1.3703	1.0158	22.4	4	0	Linear	1.2323	1.0158	10.467	2	0	Median	0.95081	1.117	36.132	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295930000	133800000	162140000	182130000	76826000	105300000	113800000	56973000	56831000	0	0	0	0	0	0	43737	4442	41169	265528;265529;265530;265531;265532	356143;356144;356145;356146;356147;356148	356147			6	
RPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYK	1	Unmodified	3884.9347	0.93466799	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			5							5				53.296	51.715	4;5	2.6393E-11	42097	160511_QHF_FH_JSI9i_3	62.945	61.419			1.1847	0.98867	5.2776	5	1	Median	1.1847	0.98867	5.2776	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178280000	79908000	98370000	178280000	79908000	98370000	0	0	0	0	0	0	0	0	0	43738	2579	41170	265533;265534;265535;265536;265537	356149;356150;356151;356152;356153;356154;356155;356156	356150			7	
RPLILQLIFSK	1	Unmodified	1326.8387	0.83874232	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				88.061	79.424	3	4.4728E-09	44045	160513_QHF_FH_JSI9Kac_6	114.86	92.817			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43739	1711	41171	265538	356157	356157			1	
RPLILQLVHVSQEDK	1	Unmodified	1774.0101	0.010117761	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			69.745	62.069	3	0.057585	34114	160513_QHF_FH_JSI10Kac_6	26.209	19.17			1.0781	1.2495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0781	1.2495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13873000	4761300	9112000	0	0	0	13873000	4761300	9112000	0	0	0	0	0	0	43740	133	41172	265539	356158	356158			1	
RPLSGPDVGTPQPAGLASGAK	1	Unmodified	1975.0487	0.048688112	756	O96013	PAK4	Serine/threonine-protein kinase PAK 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.404	43.826	3	8.9977E-08	35712	160511_QHF_FH_JSI9i_3	89.011	79.262			1.0369	1.0106	12.197	2	0	Median	1.1393	0.92706	NaN	1	0	Median	0.94373	1.1016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72375000	34556000	37818000	47528000	21936000	25591000	24847000	12620000	12227000	0	0	0	0	0	0	43741	756	41173	265540;265541	356159;356160;356161;356162;356163	356161			5	
RPMEEDGEEK	1	Unmodified	1218.5187	0.51866633	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							2	4	5	1	5.6033	5.3242	2;3	3.7141E-06	3312	160511_QHF_FH_JSI11i_3	110.39	65.94			1.0524	1.1126	28.813	12	0	Median	1.5302	1.3067	5.6553	2	0	Median	1.2351	1.4903	32.848	4	0	Median	0.96301	0.96267	20.776	5	0	Median	0.92726	1.0104	NaN	1	0	Median	947770000	432020000	515750000	202590000	77893000	124700000	358340000	163620000	194720000	348780000	168500000	180280000	38064000	22012000	16053000	43742	2325	41174	265542;265543;265544;265545;265546;265547;265548;265549;265550;265551;265552;265553	356164;356165;356166;356167;356168;356169;356170;356171;356172;356173;356174	356165			10	
RPMSAYMLWLNASR	0	Unmodified	1694.8385	0.8385011	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			76.657	70.407	3	0.0046337	38469	160513_QHF_FH_JSI10Kac_6	36.638	17.314			0.59532	0.70192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59532	0.70192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23497000	13707000	9790200	0	0	0	23497000	13707000	9790200	0	0	0	0	0	0	43743	2277	41175	265554	356175	356175			1	
RPNDIYVNMK	1	Unmodified	1248.6285	0.62849155	568	O75817	POP7	Ribonuclease P protein subunit p20	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			4							1	2	1		27.046	25.721	2;3	0.0088941	21636	160511_QHF_FH_JSI11i_3	56.729	26.475			0.72459	0.82	34.656	3	1	Median	1.2034	0.98634	NaN	1	0	Median	0.56469	0.64304	34.381	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74422000	36390000	38032000	21515000	8827400	12688000	52906000	27562000	25344000	0	0	0	0	0	0	43744	568	41176	265555;265556;265557;265558	356176;356177;356178	356176			2	
RPNQALLENIALYLTHMLK	1	Unmodified	2237.2354	0.23544303	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.402	90.681	4	8.1233E-19	52518	160513_QHF_FH_JSI10Kac_6	141.86	116.66			1.4663	1.7308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4663	1.7308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130170000	48081000	82089000	0	0	0	130170000	48081000	82089000	0	0	0	0	0	0	43745	1665	41177	265559	356179	356179			1	
RPPAAPENTPLVPSGVK	1	Unmodified	1728.9523	0.95226853	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		43.687	42.644	3	0.00047618	37598	160511_QHF_FH_JSI11i_3	54.805	48.224			1.1807	0.9417	8.3362	3	2	Plateau	1.2321	1.0023	NaN	1	1	Median	0.81746	0.9417	NaN	1	1	Median	0.94357	0.84977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	195160000	96053000	99103000	80078000	35324000	44754000	75077000	41481000	33596000	40000000	19248000	20752000	0	0	0	43746	1628	41178	265560;265561;265562	356180;356181;356182	356180			3	
RPPAPLVTDK	1	Unmodified	1092.6291	0.62914348	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			20.705	19.501	3	0.044676	15598	160511_QHF_FH_JSI9i_3	20.315	17.561			0.9485	0.92767	6.6542	2	0	Median	1.0688	0.88503	NaN	1	0	Median	0.8417	0.97236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74078000	40698000	33380000	45669000	23742000	21927000	28410000	16956000	11453000	0	0	0	0	0	0	43747	3073	41179	265563;265564	356183	356183			1	
RPPEAFGFEQATR	0	Unmodified	1504.7423	0.74227576	1515	P41229	KDM5C	Lysine-specific demethylase 5C	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				41.188	39.652	3	0.011815	32442	160511_QHF_FH_JSI9i_3	37.177	22.386			1.2946	1.0685	NaN	1	0	Median	1.2946	1.0685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32593000	15692000	16901000	32593000	15692000	16901000	0	0	0	0	0	0	0	0	0	43748	1515	41180	265565	356184	356184			1	
RPPENEAPPVPFLHAQR	0	Unmodified	1954.0173	0.017328404	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				52.42	50.83	3;4	0.0011381	41659	160511_QHF_FH_JSI9i_3	50.608	41.562			1.4063	1.1709	NaN	1	0	Median	1.4063	1.1709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35126000	13311000	21815000	35126000	13311000	21815000	0	0	0	0	0	0	0	0	0	43749	3943	41181	265566;265567	356185;356186	356185			1	
RPPEPTTPWQEDPEPEDENLYEK	1	Unmodified	2795.2562	0.25623386	5086	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							1	1	4	3	60.611	59.984	3	1.4917E-14	53106	160511_QHF_FH_JSI11i_3	113.42	106.99			0.915	0.94574	15.726	8	1	Median	1.1744	1.0223	NaN	1	0	Median	0.89087	1.0851	NaN	1	0	Median	0.93978	0.9227	8.2252	3	0	Median	0.97792	1.0308	23.157	3	1	Plateau	847050000	466810000	380240000	105320000	53631000	51694000	126970000	68460000	58513000	402750000	220060000	182690000	212000000	124650000	87349000	43750	5086	41182	265568;265569;265570;265571;265572;265573;265574;265575;265576	356187;356188;356189;356190;356191;356192;356193;356194;356195;356196;356197;356198;356199;356200;356201;356202;356203;356204;356205;356206;356207;356208	356189			22	
RPPGDIMFLLVQR	0	Unmodified	1540.8548	0.85480309	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		82.78	74.935	3	0.011715	40444	160513_QHF_FH_JSI9Kac_6	49.333	36.973			0.86978	0.99081	11.173	3	0	Plateau	1.0216	0.89349	NaN	1	0	Median	0.84306	0.99081	NaN	1	0	Median	1.148	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118360000	63161000	55197000	35978000	16979000	18999000	70609000	40392000	30217000	11771000	5790000	5980600	0	0	0	43751	2856	41183	265577;265578;265579	356209;356210	356209			0	
RPPSAFFLFCSEYRPK	1	Unmodified	2000.9931	0.99308749	928	P09429	HMGB1	High mobility group protein B1	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	76.089	67.95	3;4	1.0011E-05	36216	160513_QHF_FH_JSI9Kac_6	106.28	95.286			1.0193	0.95487	18.392	6	0	Median	1.0193	0.86567	6.635	2	0	Median	0.79266	0.94228	9.1109	2	0	Median	NaN	NaN	NaN	0	0	Median	1.202	1.2615	1.8282	2	0	Median	808130000	404700000	403440000	250200000	121790000	128410000	447700000	231930000	215770000	0	0	0	110230000	50976000	59254000	43752	928	41184	265580;265581;265582;265583;265584;265585	356211;356212;356213;356214;356215;356216;356217;356218;356219;356220;356221	356212			11	
RPQTDQAVEFFIR	0	Unmodified	1605.8263	0.82633974	3464	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				62.537	61.029	3	0.0028559	50181	160511_QHF_FH_JSI9i_3	45.115	34.471			1.0826	0.86832	NaN	1	0	Median	1.0826	0.86832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24613000	13239000	11374000	24613000	13239000	11374000	0	0	0	0	0	0	0	0	0	43753	3464	41185	265586	356222	356222			1	
RPSAPVDFSK	1	Unmodified	1102.5771	0.57710791	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		24.437	23.647	2;3	0.00064299	19187	160511_QHF_FH_JSI9i_3	57.175	38.907			1.0153	0.90115	7.5636	5	0	Median	1.0635	0.85292	7.779	2	0	Median	0.83573	0.96381	NaN	1	0	Median	1.0013	0.93709	5.8773	2	0	Median	NaN	NaN	NaN	0	0	Median	341400000	169660000	171740000	147090000	66022000	81072000	68293000	37197000	31096000	126010000	66438000	59570000	0	0	0	43754	2568	41186	265587;265588;265589;265590;265591	356223;356224;356225;356226;356227;356228;356229	356227			7	
RPSNSTPPPTQLSK	1	Unmodified	1508.7947	0.79470526	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			15.157	14.2	3	0.014256	11151	160511_QHF_FH_JSI9i_3	35.726	29.831			0.79655	0.75863	13.327	2	0	Median	1.0477	0.8336	NaN	1	0	Median	0.6056	0.6904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43918000	21248000	22670000	29909000	12864000	17045000	14009000	8384000	5624600	0	0	0	0	0	0	43755	2570	41187	265592;265593	356230;356231;356232;356233	356232			4	
RPSPDEPMTNLELK	1	Unmodified	1625.8083	0.80830641	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							3	3	4	3	45.486	44.715	2;3	5.6267E-07	38119	160511_QHF_FH_JSI12i_3	90.685	64.171			1.0141	1.0117	11.904	11	1	Median	1.184	1.0117	14.594	3	1	Median	0.95793	1.1213	11.284	3	0	Median	0.99581	0.93584	7.1041	4	0	Median	1.0773	1.077	NaN	1	0	Median	1510600000	766220000	744360000	431070000	208410000	222660000	377570000	199350000	178220000	609920000	305760000	304160000	92018000	52707000	39311000	43756	5296	41188	265594;265595;265596;265597;265598;265599;265600;265601;265602;265603;265604;265605;265606	356234;356235;356236;356237;356238;356239;356240;356241;356242;356243;356244;356245;356246;356247;356248;356249;356250;356251;356252;356253;356254;356255;356256;356257;356258;356259;356260;356261;356262	356262			28	
RPSPDEPMTNLELK	1	Oxidation (M)	1641.8032	0.80322103	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		32.888	32.888	3	0.0005399	28496	160511_QHF_FH_JSI11i_3	71.344	63.563			0.8459	0.79952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8459	0.79952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57359000	26499000	30860000	0	0	0	0	0	0	57359000	26499000	30860000	0	0	0	43757	5296	41188	265607	356263	356263		2625	1	
RPSTSQTVSTPAPVPVIESTEAIEAK	1	Unmodified	2694.4076	0.40758955	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.2	0.748	1	2	2							2	3			68.926	67.938	3	9.5747E-21	59940	160511_QHF_FH_JSI9i_2	117.08	109.97			0.76192	0.84056	19.812	5	1	Median	1.1318	0.93454	19.306	2	0	Median	0.76192	0.85218	18.541	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	522350000	279530000	242820000	262400000	128290000	134120000	259940000	151250000	108700000	0	0	0	0	0	0	43758	1016	41189	265608;265609;265610;265611;265612	356264;356265;356266;356267;356268;356269;356270;356271;356272;356273	356273			10	
RPTDYFAEMAK	1	Unmodified	1327.6231	0.62307182	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							4	3	3	1	44.992	44.116	2;3	0.00033227	36926	160511_QHF_FH_JSI10i_3	64.121	54.799			0.85904	0.85276	20.222	11	4	Median	1.0911	0.90135	11.583	4	2	Median	0.85124	0.97859	26.408	3	1	Plateau	0.73188	0.68491	24.601	3	1	Plateau	0.59262	0.61655	NaN	1	0	Median	1257100000	643360000	613700000	360380000	177350000	183020000	432750000	237970000	194770000	426340000	202380000	223960000	37602000	25651000	11951000	43759	4322	41190	265613;265614;265615;265616;265617;265618;265619;265620;265621;265622;265623	356274;356275;356276;356277;356278;356279;356280;356281;356282;356283;356284;356285;356286;356287;356288;356289;356290	356280			16	
RPTEICADPQFIIGGATR	0	Unmodified	2001.0102	0.010194116	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			65.175	63.67	3	0.00058311	53362	160511_QHF_FH_JSI10i_3	58.073	48.703			0.71578	0.80183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71578	0.80183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22269000	15747000	6522000	0	0	0	22269000	15747000	6522000	0	0	0	0	0	0	43760	1122	41191	265624;265625	356291;356292	356292			2	
RPTELLSNPQFIVDGATR	0	Unmodified	2013.0643	0.064338176	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				69.651	68.163	3	1.1866E-05	55912	160511_QHF_FH_JSI9i_3	59.342	53.562			1.1831	0.96183	NaN	1	0	Median	1.1831	0.96183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110280000	49930000	60351000	110280000	49930000	60351000	0	0	0	0	0	0	0	0	0	43761	871	41192	265626	356293	356293			1	
RPTPNDDTLDEGVGLVHSNIATEHIPSPAK	1	Unmodified	3179.5847	0.58471907	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				68.724	67.236	4;5	0.0038748	55115	160511_QHF_FH_JSI9i_3	33.601	27.634			0.93608	0.76826	29.763	2	1	Median	0.93608	0.76826	29.763	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70761000	41526000	29234000	70761000	41526000	29234000	0	0	0	0	0	0	0	0	0	43762	2170	41193	265627;265628	356294;356295	356295			2	
RPTPQDNLTDAENGNIQLQAQR	0	Unmodified	2478.2211	0.22112618	1597	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				46.142	44.532	3	4.1032E-10	36443	160511_QHF_FH_JSI9i_3	108.17	94.44			1.5424	1.2576	NaN	1	1	Median	1.5424	1.2576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17840000	4901200	12939000	17840000	4901200	12939000	0	0	0	0	0	0	0	0	0	43763	1597	41194	265629	356296	356296			1	
RPTPQDSPIFLPVDDTSFR	0	Unmodified	2187.096	0.096032235	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.5	5.26		1	7						2	3	3	4		79.307	76.56	2;3	3.5225E-10	65455	160511_QHF_FH_JSI10i_3	124.25	116.45			1.1097	1.2082	21.442	8	2	Median	1.5849	1.2583	16.174	3	1	Median	1.0966	1.162	6.2856	3	1	Plateau	0.86123	0.81022	8.0948	2	0	Median	NaN	NaN	NaN	0	0	Median	2282200000	1065900000	1216200000	1014900000	406970000	607940000	868830000	443730000	425100000	398420000	215240000	183180000	0	0	0	43764	1650	41195	265630;265631;265632;265633;265634;265635;265636;265637;265638;265639	356297;356298;356299;356300;356301;356302;356303;356304;356305;356306;356307;356308;356309;356310;356311;356312;356313	356300			17	
RPVDSYDIPK	1	Unmodified	1188.6139	0.61388734	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.65		6	4					1		2	3	3	3	26.807	25.29	2;3	0.00088546	21506	160511_QHF_FH_JSI11i_3	56.225	50.224			0.88233	0.85431	15.982	11	1	Median	0.93767	0.79652	9.905	2	0	Median	0.75532	0.95612	12.607	3	1	Plateau	1.0712	1.0573	13.637	3	0	Median	0.84395	0.84854	9.8431	3	0	Median	1036800000	498270000	538570000	159090000	76952000	82140000	208000000	107740000	100260000	285760000	120730000	165030000	383990000	192850000	191140000	43765	3799	41196	265640;265641;265642;265643;265644;265645;265646;265647;265648;265649;265650	356314;356315;356316;356317;356318;356319;356320;356321	356314			7	
RPVLLLHPLGGWTK	1	Unmodified	1585.9457	0.94566701	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			71.969	64.503	4	0.0013847	35399	160513_QHF_FH_JSI10Kac_6	63.128	57.917			0.54535	0.62169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54535	0.62169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12813000	8578800	4234000	0	0	0	12813000	8578800	4234000	0	0	0	0	0	0	43766	315	41197	265651	356322	356322			1	
RPVSAMFIFSEEK	1	Unmodified	1539.7755	0.77554972	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			71.916	64.45	3	0.0036397	35331	160513_QHF_FH_JSI10Kac_6	38.511	25.531			1.0194	1.2037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0194	1.2037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46882000	21971000	24911000	0	0	0	46882000	21971000	24911000	0	0	0	0	0	0	43767	1117	41198	265652	356323	356323			1	
RPWITGDESIVGLMK	1	Unmodified	1700.892	0.89197646	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	4	2	1	79.92	78.993	2;3	5.2751E-07	66462	160511_QHF_FH_JSI10i_3	108.89	80.261			0.98436	0.85617	37.087	9	2	Median	1.0315	0.85071	0.90452	2	0	Median	0.74827	0.85633	21.169	4	1	Median	0.94978	0.90702	10.892	2	0	Median	2.3845	2.4891	NaN	1	1	Median	1091100000	565320000	525800000	161870000	79467000	82406000	318130000	177710000	140420000	573350000	288590000	284750000	37767000	19546000	18221000	43768	2757	41199	265653;265654;265655;265656;265657;265658;265659;265660;265661;265662	356324;356325;356326;356327;356328;356329;356330;356331;356332;356333;356334;356335;356336;356337;356338;356339;356340;356341;356342	356334			19	
RPYEPINSIK	1	Unmodified	1215.6612	0.66117189	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			26.671	25.378	2	0.011272	20945	160511_QHF_FH_JSI10i_3	46.891	18.493			0.78022	0.8954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78022	0.8954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12115000	6217300	5897200	0	0	0	12115000	6217300	5897200	0	0	0	0	0	0	43769	3756	41200	265663	356343	356343			1	
RQAELDGK	1	Unmodified	915.47739	0.47739386	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							1	2	2	1	5.539	5.3428	2;3	0.0016072	3105	160511_QHF_FH_JSI11i_3	56.729	40.189			0.78703	0.93066	20.773	6	1	Median	0.77339	0.68034	NaN	1	0	Median	0.74443	0.93066	3.4081	2	1	Median	1.2322	1.1523	8.6209	2	0	Median	0.80091	0.81432	NaN	1	0	Median	2687800000	1214300000	1473600000	103070000	42903000	60168000	589230000	290020000	299200000	1668800000	715400000	953360000	326800000	165960000	160840000	43770	1085	41201	265664;265665;265666;265667;265668;265669	356344;356345;356346;356347;356348	356346			4	
RQAELLEK	1	Unmodified	985.55564	0.55564418	4242;2089	Q96SB4;P78362	SRPK1;SRPK2	SRSF protein kinase 1;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		12.859	12.478	3	0.0061908	9878	160511_QHF_FH_JSI11i_3	50.473	27.733			1.309	1.3708	53.172	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7133	1.9965	NaN	1	0	Median	1.0001	0.94124	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	182910000	51766000	131140000	0	0	0	97887000	16428000	81459000	85019000	35338000	49681000	0	0	0	43771	4242;2089	41202	265670;265671	356349;356350	356349			2	
RQAEVELASR	0	Unmodified	1157.6153	0.61528433	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			13.266	12.504	2;3	0.011024	9873	160511_QHF_FH_JSI10i_3	47.198	23.769			0.86631	1.027	4.5037	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86631	1.027	4.5037	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132140000	68905000	63234000	0	0	0	132140000	68905000	63234000	0	0	0	0	0	0	43772	2636	41203	265672;265673	356351;356352	356351			1	
RQALVEFENIDSAK	1	Unmodified	1618.8315	0.83148469	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			51.635	50.057	3	7.2767E-05	41740	160511_QHF_FH_JSI10i_3	81.632	75.356			0.98323	0.94996	17.593	2	0	Median	1.0277	0.83883	NaN	1	0	Median	0.94071	1.0758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97750000	47073000	50677000	62333000	33110000	29223000	35417000	13963000	21454000	0	0	0	0	0	0	43773	3788	41204	265674;265675	356353;356354;356355;356356;356357	356353			5	
RQAQQERDELADEIANSSGK	1	Unmodified	2244.0731	0.073064962	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	2	By MS/MS				3	0			5							5				36.156	34.698	3;4	0.00062448	28399	160511_QHF_FH_JSI9i_3	50.425	42.137			1.1392	0.92991	8.4093	4	2	Median	1.1392	0.92991	8.4093	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218440000	99836000	118610000	218440000	99836000	118610000	0	0	0	0	0	0	0	0	0	43774	1436	41205	265676;265677;265678;265679;265680	356358;356359;356360;356361;356362	356360			5	
RQAQSPAGVSSEVEVLK	1	Unmodified	1783.9428	0.94282606	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			42.889	41.355	3	0.00021642	34535	160511_QHF_FH_JSI10i_3	63.691	55.777			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43775	2357	41206	265681;265682	356363;356364	356364			2	
RQAVTNPNNTFYATK	1	Unmodified	1723.8642	0.86418181	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	6.18	6.03		4	4						3	5	5		1	28.784	25.553	2;3	6.3123E-18	14508	160513_QHF_FH_JSI10Kac_6	119.45	108.98			0.89601	0.7008	14.496	11	0	Linear	0.85875	0.79802	14.299	5	0	Linear	0.69549	0.80248	13.223	5	0	Median	NaN	NaN	NaN	0	0	Median	0.99511	1.0913	NaN	1	0	Median	1410000000	736640000	673400000	751910000	359090000	392820000	648810000	372430000	276380000	0	0	0	9328500	5129300	4199300	43776	1480	41207	265683;265684;265685;265686;265687;265688;265689;265690;265691;265692;265693	356365;356366;356367;356368;356369;356370;356371;356372;356373;356374;356375;356376;356377;356378;356379;356380;356381	356381			17	
RQCTGCTGMVTFYIK	1	Unmodified	1820.8372	0.83718047	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.453	54.132	3	0.0001748	29803	160513_QHF_FH_JSI10Kac_6	103.6	93.547			0.88629	1.0564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88629	1.0564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19481000	11633000	7847600	0	0	0	19481000	11633000	7847600	0	0	0	0	0	0	43777	1397	41208	265694	356382	356382			1	
RQDIVLSGAHIK	1	Unmodified	1335.7623	0.76228292	411	O60333	KIF1B	Kinesin-like protein KIF1B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			30.005	28.662	4	0.058953	23812	160511_QHF_FH_JSI10i_3	13.326	3.0003			0.6557	0.76216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6557	0.76216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10501000	6125200	4375500	0	0	0	10501000	6125200	4375500	0	0	0	0	0	0	43778	411	41209	265695	356383	356383			1	
RQDLIDEWIAK	1	Unmodified	1385.7303	0.73031409	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		68.192	68.192	2	0.0084965	60755	160511_QHF_FH_JSI11i_3	56.404	45.185			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43779	666	41210	265696	356384	356384			1	
RQDLLNVLAR	0	Unmodified	1196.699	0.69895438	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			55.395	53.836	3	0.0029372	44120	160511_QHF_FH_JSI9i_3	73.887	46.998			1.146	1.1034	12.422	2	0	Median	1.2374	1.0106	NaN	1	0	Median	1.0613	1.2047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60899000	29055000	31844000	37521000	17801000	19720000	23378000	11255000	12124000	0	0	0	0	0	0	43780	3959	41211	265697;265698	356385;356386	356386			0	
RQDPGDNWEEGGGGGGGMEK	1	Unmodified	2031.8341	0.83408024	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	25.22	24.758	3	4.2594E-10	20704	160511_QHF_FH_JSI11i_3	114.02	111.28			0.9101	0.92901	17.244	5	1	Median	1.448	1.248	NaN	1	0	Median	0.70406	0.87093	NaN	1	0	Median	0.991	0.96418	20.853	2	1	Median	0.9101	0.92901	NaN	1	0	Median	360360000	197500000	162870000	37241000	14847000	22394000	59507000	32596000	26911000	217180000	122110000	95065000	46438000	27942000	18496000	43781	5383	41212	265699;265700;265701;265702;265703;265704	356387;356388;356389;356390;356391;356392;356393;356394;356395;356396	356389			10	
RQDPGDNWEEGGGGGGGMEK	1	Oxidation (M)	2047.829	0.82899487	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		24.447	24.447	3	0.00022215	20807	160511_QHF_FH_JSI11i_3	59.339	52.611			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11821000	0	11821000	0	0	0	0	0	0	11821000	0	11821000	0	0	0	43782	5383	41212	265705	356397	356397		2647	1	
RQEAIAQNR	0	Unmodified	1084.5738	0.57375386	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			5.2012	4.713	2	1.1631E-05	2718	160511_QHF_FH_JSI9i_3	110.88	60.251			0.96773	0.9273	24.459	2	0	Median	1.3809	1.1024	NaN	1	0	Median	0.6782	0.78003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	211420000	100170000	111250000	160350000	69124000	91229000	51066000	31044000	20022000	0	0	0	0	0	0	43783	3101	41213	265706;265707	356398;356399	356399			2	
RQEALPLHQETK	1	Unmodified	1448.7736	0.77357588	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.83	0.373		1	5							3	3			16.502	15.509	3;4	0.0056459	12338	160511_QHF_FH_JSI10i_3	48.467	36.106			0.84689	0.92891	36.218	6	3	Median	1.7861	1.4199	48.304	3	1	Median	0.67416	0.81707	10.297	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	323470000	165830000	157640000	122680000	57218000	65459000	200790000	108620000	92179000	0	0	0	0	0	0	43784	3328	41214	265708;265709;265710;265711;265712;265713	356400;356401;356402;356403;356404;356405	356400			5	
RQEEIKK	2	Unmodified	929.52943	0.52942943	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			2.4112	1.9621	3	0.022262	1051	160511_QHF_FH_JSI10i_3	57.177	30.04			0.48285	0.5618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.48285	0.5618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64680000	45646000	19034000	0	0	0	64680000	45646000	19034000	0	0	0	0	0	0	43785	571	41215	265714	356406	356406			1	
RQELDAFLAQALSPK	1	Unmodified	1685.9101	0.91006937	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	83.145	82.605	3	4.3266E-05	73471	160511_QHF_FH_JSI11i_3	80.719	64.9			0.87534	0.83177	37.922	5	4	Median	1.1819	0.98336	NaN	1	1	Median	0.90125	1.0639	69.639	2	2	Median	0.87534	0.83177	NaN	1	0	Median	0.7613	0.76422	NaN	1	1	Median	389720000	190300000	199420000	26441000	12212000	14230000	95501000	41574000	53927000	189150000	90709000	98445000	78627000	45808000	32819000	43786	5147	41216	265715;265716;265717;265718;265719	356407;356408;356409;356410;356411;356412	356407			6	
RQELEAELAK	1	Unmodified	1185.6354	0.63535107	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	23.857	23.404	2;3	0.021555	19225	160511_QHF_FH_JSI12i_3	56.013	18.455			0.27559	0.30856	98.201	2	1	Median	NaN	NaN	NaN	0	0	Median	0.1238	0.15409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61349	0.61789	NaN	1	1	Median	179370000	120840000	58536000	0	0	0	98532000	74758000	23774000	0	0	0	80841000	46079000	34762000	43787	2636	41217	265720;265721	356413;356414	356414			2	
RQELVNFLK	1	Unmodified	1145.6557	0.65569258	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			50.336	48.769	3	0.0016935	40790	160511_QHF_FH_JSI10i_3	61.78	48.01			0.54242	0.64445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54242	0.64445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19041000	10957000	8083400	0	0	0	19041000	10957000	8083400	0	0	0	0	0	0	43788	3059	41218	265722	356415	356415			1	
RQELVTK	1	Unmodified	872.50797	0.50796571	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.59		5	8					1	3	6	5	4	2	7.1225	4.9506	2;3	0.0018107	4453	160511_QHF_FH_JSI9i_3	83.206	47.326			1.0104	0.98338	20.896	17	0	Median	1.1242	0.94665	24.285	6	0	Median	0.82132	0.97445	20.889	5	0	Median	1.3684	1.2985	15.171	4	0	Linear	0.8068	0.8215	3.8169	2	0	Median	6050700000	2874400000	3176400000	1257200000	542880000	714280000	2331200000	1253500000	1077700000	1956400000	812610000	1143800000	506000000	265410000	240580000	43789	816	41219	265723;265724;265725;265726;265727;265728;265729;265730;265731;265732;265733;265734;265735;265736;265737;265738;265739	356416;356417;356418;356419;356420;356421;356422;356423;356424;356425;356426;356427;356428;356429;356430;356431;356432;356433;356434;356435;356436;356437;356438	356424			23	
RQEQIAK	1	Unmodified	871.48756	0.48756462	2018	P62753	RPS6	40S ribosomal protein S6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.26	6.03	2	8	9					4	4	6	7	7	7	4.6422	1.9331	2;3	0.0013469	2187	160511_QHF_FH_JSI11i_2	121.99	69.306			0.95129	1.0677	39.316	27	4	Median	1.3629	1.1426	23.878	6	1	Median	0.82641	0.96871	14.575	7	0	Median	1.1168	1.1372	18.541	7	0	Median	0.7593	0.79335	71.032	7	3	Median	37474000000	17976000000	19498000000	7000100000	2745800000	4254300000	15665000000	7355300000	8309500000	13072000000	6912500000	6159200000	1737600000	962540000	775020000	43790	2018	41220	265740;265741;265742;265743;265744;265745;265746;265747;265748;265749;265750;265751;265752;265753;265754;265755;265756;265757;265758;265759;265760;265761;265762;265763;265764;265765;265766	356439;356440;356441;356442;356443;356444;356445;356446;356447;356448;356449;356450;356451;356452;356453;356454;356455;356456;356457;356458;356459;356460;356461;356462;356463;356464;356465;356466;356467;356468;356469;356470;356471;356472;356473;356474;356475;356476;356477;356478;356479;356480	356459			42	
RQEQIQAMPLADSQAVR	0	Unmodified	1939.9898	0.98979302	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			45.281	43.725	3	0.040486	36351	160511_QHF_FH_JSI10i_3	28.869	19.938			1.4925	1.7498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4925	1.7498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17725000	6665600	11059000	0	0	0	17725000	6665600	11059000	0	0	0	0	0	0	43791	2636	41221	265767	356481	356481			1	
RQGHAEPQP	0	Unmodified	1018.4944	0.49444091	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			4.9258	4.4376	2	0.0097289	2455	160511_QHF_FH_JSI10i_3	64.265	30.261			0.84614	0.82098	83.975	2	2	Median	1.8301	1.4867	NaN	1	1	Median	0.39121	0.45337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85863000	42077000	43785000	47621000	17625000	29996000	38242000	24452000	13790000	0	0	0	0	0	0	43792	99	41222	265768;265769	356482;356483	356482			2	
RQIIVEEAK	1	Unmodified	1084.6241	0.6240581	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	2	2	2	1	18.238	15.915	2;3	3.0943E-05	12844	160511_QHF_FH_JSI10i_3	80.688	50.124			1.0302	0.9837	8.8749	5	1	Median	1.1562	0.95829	3.7016	2	1	Median	0.95327	1.1169	6.6124	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85727	0.98042	NaN	1	0	Median	373750000	175940000	197810000	121490000	52963000	68532000	250030000	121760000	128280000	0	0	0	2218400	1220100	998360	43793	5500	41223	265770;265771;265772;265773;265774;265775;265776	356484;356485;356486;356487;356488;356489;356490;356491;356492	356487			9	
RQLDTETNLHLNTK	1	Unmodified	1681.8747	0.87474649	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			29.578	28.216	3;4	5.4922E-07	22975	160511_QHF_FH_JSI9i_3	127.36	119.18			1.2259	1.094	12.532	4	0	Linear	1.1944	0.96961	9.9845	2	0	Median	1.0054	1.1733	2.8087	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	402420000	201520000	200900000	235530000	106480000	129050000	166890000	95042000	71848000	0	0	0	0	0	0	43794	1016	41224	265777;265778;265779;265780	356493;356494;356495	356494			3	
RQLEDGDQPESK	1	Unmodified	1400.6532	0.65318598	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.76	2.9	4	7	5				1			3	4	4	6	8.3251	7.5686	2;3	7.4381E-23	5564	160511_QHF_FH_JSI11i_3	176.78	132.47			0.89297	0.96328	12.249	16	2	Median	1.2255	1.0336	23.125	3	1	Plateau	0.87931	1.0817	6.8548	3	0	Plateau	0.95545	0.92747	14.052	4	0	Median	0.89297	0.95325	6.8513	6	1	Median	2794900000	1431700000	1363200000	458700000	200690000	258010000	580860000	315580000	265270000	1079000000	565250000	513740000	676400000	350210000	326190000	43795	3911	41225	265781;265782;265783;265784;265785;265786;265787;265788;265789;265790;265791;265792;265793;265794;265795;265796;265797	356496;356497;356498;356499;356500;356501;356502;356503;356504;356505;356506;356507;356508;356509;356510;356511;356512;356513;356514;356515;356516;356517;356518;356519;356520;356521;356522;356523	356496			28	
RQLEEAEEEAQR	0	Unmodified	1486.7012	0.7011988	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.24	1	10	4					4		3	6	5	5	14.297	11.788	2;3	6.4598E-54	9662	160511_QHF_FH_JSI11i_2	193.49	179.06			0.95782	0.9836	14.321	17	1	Median	1.2062	1.0148	3.5378	3	0	Plateau	0.80318	0.99827	9.8965	4	0	Median	0.97208	0.97567	16.886	5	0	Median	0.7751	0.8723	15.317	5	1	Median	2672200000	1312300000	1359800000	947630000	398910000	548720000	910370000	498000000	412370000	703040000	349050000	354000000	111120000	66382000	44734000	43796	1436	41226	265798;265799;265800;265801;265802;265803;265804;265805;265806;265807;265808;265809;265810;265811;265812;265813;265814;265815;265816	356524;356525;356526;356527;356528;356529;356530;356531;356532;356533;356534;356535;356536;356537;356538;356539;356540;356541;356542;356543;356544;356545;356546;356547;356548;356549;356550;356551	356538			27	
RQLEEEQK	1	Unmodified	1058.5356	0.53563702	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.1521	5.1521	2	0.00020859	2873	160511_QHF_FH_JSI11i_3	120.15	18.511			1.0379	0.97166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0379	0.97166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110440000	50857000	59580000	0	0	0	0	0	0	110440000	50857000	59580000	0	0	0	43797	3888	41227	265817	356552	356552			1	
RQLETLGQEK	1	Unmodified	1200.6463	0.64625011	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.05		5	5						2	4	5	2	1	15.565	13.847	2;3	0.00049853	11276	160511_QHF_FH_JSI10i_3	62.166	44.357		+	0.88773	0.93206	43.407	12	4	Median	1.4818	1.2378	35.046	4	2	Median	0.70825	0.88392	38.077	5	1	Median	0.69332	0.65445	7.0392	2	0	Median	1.7322	1.9822	NaN	1	1	Median	915780000	514540000	401240000	175330000	87412000	87915000	474810000	279200000	195600000	263420000	147180000	116230000	2229100	742330	1486800	43798	51	41228	265818;265819;265820;265821;265822;265823;265824;265825;265826;265827;265828;265829	356553;356554;356555;356556;356557;356558;356559;356560;356561;356562;356563;356564;356565;356566;356567;356568;356569	356560			17	
RQLQQLQEGTLQEYQK	1	Unmodified	1989.028	0.02795267	4769	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				41.51	39.974	3	7.407E-08	32673	160511_QHF_FH_JSI9i_3	135.47	121.56			1.203	0.95471	NaN	1	0	Median	1.203	0.95471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30650000	14545000	16105000	30650000	14545000	16105000	0	0	0	0	0	0	0	0	0	43799	4769	41229	265830	356570;356571	356571			2	
RQNEDIEPTSSR	0	Unmodified	1430.675	0.67498405	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			9.0671	8.5717	2	0.0084683	6516	160511_QHF_FH_JSI10i_2	50.108	30.346			0.95696	0.98612	22.4	2	0	Median	1.3249	1.1554	NaN	1	0	Median	0.69122	0.84167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45139000	25651000	19489000	24035000	11058000	12977000	21104000	14593000	6511600	0	0	0	0	0	0	43800	5063	41230	265831;265832	356572	356572			1	
RQNEIAK	1	Unmodified	857.47191	0.47191456	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			3.6885	3.2671	2	0.018203	1323	160511_QHF_FH_JSI10i_3	60.76	0			0.98315	0.98111	3.3597	2	0	Median	1.1843	1.0047	NaN	1	0	Median	0.81617	0.95807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	166350000	83417000	82930000	139450000	65667000	73785000	26894000	17750000	9144500	0	0	0	0	0	0	43801	2560	41231	265833;265834	356573;356574	356573			2	
RQNGDDPLLTYR	0	Unmodified	1446.7215	0.72154031	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3.64	3.94		6	4						1	4	6	1		34.735	32.907	2;3	2.0526E-06	28759	160511_QHF_FH_JSI9i_2	138.22	116.77			0.95267	0.98781	30.262	11	4	Median	1.508	1.2801	33.661	4	1	Median	0.81295	0.96779	15.204	6	2	Median	0.60081	0.61348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1078900000	538030000	540910000	382000000	167550000	214450000	617550000	326780000	290770000	79387000	43695000	35692000	0	0	0	43802	791	41232	265835;265836;265837;265838;265839;265840;265841;265842;265843;265844;265845	356575;356576;356577;356578;356579;356580;356581;356582;356583;356584;356585;356586;356587;356588;356589;356590	356581			16	
RQNGEEGYVPTSYIDVTLEK	1	Unmodified	2297.1176	0.11755554	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.626	70.328	3	5.0578E-05	60954	160511_QHF_FH_JSI12i_3	66.325	58.879			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43803	2934	41233	265846	356591	356591			1	
RQNVELK	1	Unmodified	885.50321	0.50321468	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				7.5219	6.9691	3	0.027003	4721	160511_QHF_FH_JSI9i_3	35.149	0.34163			1.0894	0.91135	NaN	1	1	Median	1.0894	0.91135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102820000	45110000	57713000	102820000	45110000	57713000	0	0	0	0	0	0	0	0	0	43804	4121	41234	265847	356592	356592			1	
RQPEAVHLLDK	1	Unmodified	1304.7201	0.72008375	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			29.991	28.623	3	0.00048221	23282	160511_QHF_FH_JSI9i_3	51.875	30.645			0.99993	0.95589	16.102	2	0	Median	1.3205	1.0712	NaN	1	0	Median	0.7572	0.85302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113480000	48919000	64565000	82199000	28462000	53737000	31285000	20457000	10828000	0	0	0	0	0	0	43805	3862	41235	265848;265849	356593;356594	356593			2	
RQPEESESK	1	Unmodified	1088.5098	0.5098162	1141	P18583	SON	Protein SON	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		3.4631	3.2662	2	0.00073301	2012	160511_QHF_FH_JSI9i_2	75.378	50.455			0.53542	0.48431	31.329	2	1	Median	0.45271	0.38807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63324	0.60441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43674000	31068000	12606000	24705000	18004000	6700700	0	0	0	18969000	13064000	5905000	0	0	0	43806	1141	41236	265850;265851	356595;356596;356597	356596			3	
RQPQEEVVHEDQGK	1	Unmodified	1677.8071	0.80706086	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	3	1		10.49	10.019	3;4	9.5463E-05	7930	160511_QHF_FH_JSI10i_2	59.709	52.198			0.81833	0.94682	18.971	5	1	Median	1.138	0.97926	NaN	1	0	Median	0.81833	0.94682	8.9229	3	1	Median	0.71203	0.63845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242400000	125020000	117380000	43469000	20551000	22918000	150600000	80481000	70120000	48325000	23985000	24340000	0	0	0	43807	3799	41237	265852;265853;265854;265855;265856	356598;356599;356600;356601;356602;356603;356604	356603			7	
RQQEEEAAAQMK	1	Unmodified	1417.662	0.66197652	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			9.3976	8.8981	3	0.013905	6880	160511_QHF_FH_JSI10i_2	37.793	24.389			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43808	4829	41238	265857	356605	356605			1	
RQQEEMMR	0	Unmodified	1106.4961	0.49609717	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		6.4826	6.1667	2;3	0.0023108	4094	160511_QHF_FH_JSI10i_3	87.308	34.905			0.62588	0.78879	30.593	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80221	0.97797	31.62	2	0	Median	1.4642	1.4041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	195090000	102260000	92831000	0	0	0	152820000	83740000	69078000	42273000	18519000	23753000	0	0	0	43809	2644	41239	265858;265859;265860	356606;356607;356608;356609	356608			4	
RQQEESFQEQSALAAEAR	0	Unmodified	2076.9825	0.98245904	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			35.778	34.823	3	0.00012999	30584	160511_QHF_FH_JSI10i_2	76.155	66.749			0.47006	0.58026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47006	0.58026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21511000	15431000	6080200	0	0	0	21511000	15431000	6080200	0	0	0	0	0	0	43810	4404	41240	265861	356610	356610			1	
RQQEGFK	1	Unmodified	891.45626	0.45626449	2644;3809	Q15233;Q8WXF1	NONO;PSPC1	Non-POU domain-containing octamer-binding protein;Paraspeckle component 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							2	2	2		4.9417	4.6338	2;3	0.0030162	2552	160511_QHF_FH_JSI10i_3	64.757	54.047			0.86196	0.98426	22.69	6	1	Median	1.3801	1.1436	2.8277	2	0	Median	0.86196	0.98426	1.005	2	0	Median	0.74365	0.70673	11.811	2	1	Median	NaN	NaN	NaN	0	0	Median	2572200000	1201600000	1370500000	986260000	338110000	648150000	1134800000	593110000	541720000	451090000	270410000	180670000	0	0	0	43811	2644;3809	41241	265862;265863;265864;265865;265866;265867	356611;356612;356613;356614;356615;356616;356617;356618	356616			8	
RQQEQQVPILEK	1	Unmodified	1494.8154	0.8154407	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							4	4	4	2	31.578	30.78	2;3	1.301E-08	25652	160511_QHF_FH_JSI10i_3	138.45	138.45			0.91976	1.125	30.182	13	1	Median	1.6245	1.3594	23.779	4	0	Median	1.0405	1.2216	9.8046	4	0	Median	0.84617	0.80822	12.557	4	1	Median	0.65411	0.66892	NaN	1	0	Median	3386700000	1672900000	1713700000	995080000	400230000	594860000	1601300000	838080000	763190000	726500000	400700000	325800000	63804000	33914000	29890000	43812	1650	41242	265868;265869;265870;265871;265872;265873;265874;265875;265876;265877;265878;265879;265880;265881	356619;356620;356621;356622;356623;356624;356625;356626;356627;356628;356629;356630;356631;356632;356633;356634;356635;356636;356637;356638;356639;356640;356641;356642;356643;356644	356628			26	
RQQEVETELK	1	Unmodified	1258.6517	0.65172941	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.64	4.9		6	3					2		2	2	6	1	14.466	12.16	2;3	0.00049999	10444	160511_QHF_FH_JSI9i_2	72.928	42.358			1.0205	0.94686	24.584	9	3	Median	0.9772	0.8412	8.2274	2	0	Median	1.0356	1.2429	NaN	1	0	Median	1.1409	1.1334	30.302	5	3	Median	0.87334	0.94686	NaN	1	0	Median	394130000	205850000	188280000	106840000	55985000	50853000	52982000	23785000	29197000	231380000	124740000	106640000	2930600	1336600	1594000	43813	910	41243	265882;265883;265884;265885;265886;265887;265888;265889;265890;265891;265892	356645;356646;356647;356648;356649;356650;356651;356652;356653;356654;356655;356656;356657	356650			11	
RQQLGIEK	1	Unmodified	970.55598	0.55597854	4811	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			11.905	11.161	2	0.015043	8673	160511_QHF_FH_JSI10i_3	51.059	17.263			1.0652	1.0365	4.6517	2	0	Median	1.3202	1.0712	NaN	1	0	Median	0.85946	1.003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76816000	36178000	40638000	39281000	17704000	21578000	37534000	18474000	19060000	0	0	0	0	0	0	43814	4811	41244	265893;265894	356658;356659	356658			2	
RQQQAATSESSQSEASVR	0	Unmodified	1948.9199	0.91985878	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		9	6			1					1		1		1		9.0774	4.0404	3	2.4883E-09	5290	160511_QHF_FH_JSI9i_3	137.45	126.6			0.98174	0.87478	29.711	2	1	Median	1.3257	1.0793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72702	0.70902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58760000	26192000	32568000	56715000	24860000	31854000	0	0	0	2045100	1331800	713330	0	0	0	43815	3290	41245	265895;265896	356660;356661	356660			2	
RQQQLAGNGAPFEESLAPLQER	0	Unmodified	2438.2302	0.23023431	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				65.677	64.18	3	8.5268E-06	52664	160511_QHF_FH_JSI9i_3	60.939	52.068			1.0814	0.89224	NaN	1	0	Median	1.0814	0.89224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68303000	35726000	32577000	68303000	35726000	32577000	0	0	0	0	0	0	0	0	0	43816	1529	41246	265897	356662;356663	356663			2	
RQQQLTAMK	1	Unmodified	1102.5917	0.59171211	1436;1445	P35579;P35749	MYH9;MYH11	Myosin-9;Myosin-11	no	no	0	0	0	1	By MS/MS				3	0			1							1				10.399	9.6946	3	0.019523	7311	160511_QHF_FH_JSI9i_3	36.24	28.978			0.66788	0.53351	NaN	1	1	Median	0.66788	0.53351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156370000	88690000	67680000	156370000	88690000	67680000	0	0	0	0	0	0	0	0	0	43817	1436;1445	41247	265898	356664	356664			1	
RQSGQTDPLQK	1	Unmodified	1256.6473	0.64731274	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.71		6	4					4		6	5	2	1	10.945	7.8802	2;3	1.2299E-05	5391	160513_QHF_FH_JSI11Kac_5	85.288	67.852			1.1721	1.0889	17.207	14	3	Median	1.5838	1.1724	10.322	6	2	Linear	0.78141	0.92622	18.942	5	1	Median	1.215	1.1996	28.63	2	0	Median	1.1472	1.2678	NaN	1	0	Median	2210000000	1031900000	1178200000	1137400000	446520000	690840000	1023800000	563050000	460790000	42957000	19869000	23088000	5893000	2431200	3461900	43818	1600	41248	265899;265900;265901;265902;265903;265904;265905;265906;265907;265908;265909;265910;265911;265912	356665;356666;356667;356668;356669;356670;356671;356672;356673;356674;356675;356676;356677;356678;356679;356680;356681	356677			17	
RQSLELQK	1	Unmodified	1000.5665	0.56654322	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			13.346	12.518	2	0.011653	9962	160511_QHF_FH_JSI10i_3	54.157	25.008			0.84315	0.82405	3.2819	2	0	Median	1.0395	0.84339	NaN	1	0	Median	0.68391	0.80514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46363000	24306000	22058000	29460000	14331000	15129000	16904000	9975100	6928500	0	0	0	0	0	0	43819	5330	41249	265913;265914	356682	356682			1	
RQSNVAAPGDATPPAEK	1	Unmodified	1707.854	0.85401105	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			17.589	16.574	3	0.00017153	13156	160511_QHF_FH_JSI9i_3	57.936	38.331			1.0783	0.88853	17.072	3	0	Median	1.2347	1.0098	18.09	2	0	Median	0.71483	0.83019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117120000	60793000	56324000	74254000	37349000	36905000	42864000	23444000	19419000	0	0	0	0	0	0	43820	4206	41250	265915;265916;265917	356683;356684;356685	356684			3	
RQSPLPPQK	1	Unmodified	1049.5982	0.5981777	2164	Q01105	SET	Protein SET	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				9.8483	9.2051	2	0.013743	7072	160511_QHF_FH_JSI9i_3	53.968	24.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43821	2164	41251	265918;265919	356686;356687	356687			2	
RQTIEER	0	Unmodified	930.48829	0.4882929	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			4.8942	4.4023	2;3	0.0056318	2411	160511_QHF_FH_JSI9i_3	52.716	27.793			1.6837	1.3616	151.11	3	1	Median	1.5957	1.2983	6.7296	2	0	Median	15.735	17.762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3254800000	375500000	2879300000	752650000	303310000	449340000	2502100000	72183000	2429900000	0	0	0	0	0	0	43822	2502	41252	265920;265921;265922	356688;356689;356690;356691	356691			4	
RQTSGGPVDASSEYQQELER	0	Unmodified	2236.0356	0.035616823	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.29	2	3	3					5		3	5	4	1	41.911	37.958	3	2.5291E-14	33117	160511_QHF_FH_JSI9i_2	144.92	135.73			1.0097	1.0137	15.659	12	3	Median	1.0931	0.94491	23.04	3	2	Median	0.88503	1.0741	13.167	4	1	Median	1.0243	0.96757	18.622	4	0	Median	0.9347	0.99442	NaN	1	0	Median	766690000	390920000	375770000	207690000	100350000	107340000	407580000	213980000	193600000	149240000	75383000	73860000	2175400	1205400	970080	43823	1149	41253	265923;265924;265925;265926;265927;265928;265929;265930;265931;265932;265933;265934;265935	356692;356693;356694;356695;356696;356697;356698;356699;356700;356701;356702;356703;356704;356705;356706;356707;356708	356699			17	
RQTSGGPVDASSEYQQELERELFK	1	Unmodified	2753.3257	0.32565083	1149	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			77.799	76.553	4	2.4985E-09	63946	160511_QHF_FH_JSI10i_3	83.039	77.135			1.2804	1.1668	9.3816	4	2	Median	1.4351	1.1614	10.697	3	2	Median	1.0244	1.1747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	282610000	148550000	134060000	170630000	92529000	78100000	111980000	56019000	55961000	0	0	0	0	0	0	43824	1149	41254	265936;265937;265938;265939	356709;356710;356711	356709			3	
RQVDQLTNDK	1	Unmodified	1215.6208	0.62076364	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							1	4	2		10.181	9.7624	2;3	8.3577E-05	7416	160511_QHF_FH_JSI11i_3	99.568	66.728			1.2453	1.3437	36.175	6	2	Median	1.5418	1.3047	NaN	1	0	Median	1.2488	1.4937	12.238	3	2	Median	0.81438	0.7596	12.677	2	0	Median	NaN	NaN	NaN	0	0	Median	224690000	92831000	131860000	50675000	16436000	34238000	111640000	46540000	65100000	62379000	29855000	32524000	0	0	0	43825	913	41255	265940;265941;265942;265943;265944;265945;265946	356712;356713;356714;356715;356716;356717;356718;356719;356720;356721	356713			10	
RQVEEEILALK	1	Unmodified	1326.7507	0.75071518	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	50.036	49.918	2	0.0013955	44151	160511_QHF_FH_JSI11i_3	64.103	40.014			0.99867	0.98858	10.551	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1169	1.0652	NaN	1	0	Median	0.89292	0.91751	NaN	1	0	Median	89144000	35004000	54140000	0	0	0	0	0	0	42582000	17282000	25300000	46561000	17721000	28840000	43826	2636	41256	265947;265948	356722	356722			1	
RQVEVNVR	0	Unmodified	998.56213	0.56212655	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				11.207	10.496	2	0.016038	8029	160511_QHF_FH_JSI9i_3	66.351	36.276			1.6723	1.3531	NaN	1	1	Median	1.6723	1.3531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36491000	10754000	25737000	36491000	10754000	25737000	0	0	0	0	0	0	0	0	0	43827	225	41257	265949	356723	356723			1	
RQVLEGEEIAYK	1	Unmodified	1433.7514	0.75144346	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.67	0.471		2	4							1	1	1	3	35.313	34.861	2;3	5.9117E-05	29425	160511_QHF_FH_JSI12i_3	63.181	50.413			0.79131	0.80646	16.519	5	1	Median	1.2667	1.0765	NaN	1	1	Median	0.66338	0.80646	NaN	1	0	Median	0.93633	0.88196	NaN	1	0	Median	0.74827	0.74127	11.096	2	0	Median	283140000	153370000	129780000	28998000	10204000	18794000	36837000	21790000	15047000	76435000	35102000	41334000	140870000	86271000	54600000	43828	2207	41258	265950;265951;265952;265953;265954;265955	356724;356725;356726;356727;356728;356729	356726			6	
RQVLNADSVEQSFVGLK	1	Unmodified	1889.0007	0.0006752871	3787	Q8WVT3	TRAPPC12	Trafficking protein particle complex subunit 12	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				69.997	68.511	3	0.00014683	56306	160511_QHF_FH_JSI9i_3	67.646	57.27			3.3636	2.7482	NaN	1	1	Median	3.3636	2.7482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42977000	8223100	34754000	42977000	8223100	34754000	0	0	0	0	0	0	0	0	0	43829	3787	41259	265956;265957	356730;356731	356731			2	
RQVPVEEAR	0	Unmodified	1082.5833	0.58325592	994	P11234	RALB	Ras-related protein Ral-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			9.397	8.7905	2	0.00026159	6625	160511_QHF_FH_JSI10i_3	107.57	59.291			0.81042	0.95127	51.72	3	3	Plateau	2.9034	2.4275	NaN	1	1	Median	0.91901	1.0505	25.94	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95017000	49252000	45764000	12540000	3414300	9125700	82477000	45838000	36639000	0	0	0	0	0	0	43830	994	41260	265958;265959;265960	356732;356733;356734	356733			3	
RQVSASELHTSGILGPETLR	0	Unmodified	2150.1444	0.14437941	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	1	By MS/MS				3	0			1							1				54.343	52.768	4	0.0038204	43292	160511_QHF_FH_JSI9i_3	42.123	32.374			2.0784	1.6974	NaN	1	1	Median	2.0784	1.6974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27234000	7419700	19814000	27234000	7419700	19814000	0	0	0	0	0	0	0	0	0	43831	1898	41261	265961	356735	356735			1	
RQVSVEEAK	1	Unmodified	1044.5564	0.55637247	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		3	4					1		1	5	1	1	8.2846	6.8148	2;3	0.0001398	5507	160511_QHF_FH_JSI9i_2	78.098	64.328			0.92947	0.97807	18.79	8	1	Median	1.4402	1.2348	NaN	1	0	Median	0.79814	0.96025	20.968	5	1	Median	1.0408	0.99623	NaN	1	0	Median	0.84989	0.87479	NaN	1	0	Median	1343400000	688750000	654640000	121090000	58534000	62561000	747870000	402460000	345410000	433280000	205040000	228240000	41144000	22725000	18419000	43832	993	41262	265962;265963;265964;265965;265966;265967;265968;265969	356736;356737;356738;356739;356740;356741;356742;356743;356744;356745	356740			10	
RQYLLLHSLK	1	Unmodified	1269.7557	0.75574098	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	50.164	40.965	4	0.0025205	22138	160513_QHF_FH_JSI10Kac_6	47.971	44.843			0.98621	1.1336	2.7442	3	0	Plateau	1.3174	1.1224	NaN	1	0	Median	0.94374	1.1336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98621	1.0765	NaN	1	0	Median	81593000	37277000	44316000	30921000	11333000	19588000	41495000	21499000	19996000	0	0	0	9177300	4444900	4732300	43833	3343	41263	265970;265971;265972	356746;356747	356747			2	
RSAEEEAADLPTKPTK	2	Unmodified	1741.8846	0.88464248	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	2.62	0.484		3	5							1	3	3	1	23.709	23.114	3;4	6.4212E-05	19454	160511_QHF_FH_JSI11i_3	77.468	69.126			0.88193	0.96355	8.6947	8	0	Median	1.3377	1.1416	NaN	1	0	Median	0.82605	0.94742	5.0308	3	0	Median	0.91606	0.88927	7.9829	3	0	Median	0.96596	0.97995	NaN	1	0	Median	1718200000	918510000	799690000	155540000	63085000	92454000	504750000	269490000	235250000	1021300000	563680000	457610000	36628000	22249000	14379000	43834	3793	41264	265973;265974;265975;265976;265977;265978;265979;265980	356748;356749;356750;356751;356752;356753;356754;356755;356756;356757;356758	356752			10	
RSAEEEAADLPTKPTK	2	Acetyl (K)	1783.8952	0.89520716	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.728						1	2	4		1	2	1	3	45.159	35.203	3	0.0024893	19917	160513_QHF_FH_JSI10Kac_4	63.46	51.939			1.076	1.0243	45.773	7	1	Median	1.1239	0.95839	NaN	1	0	Median	0.85025	1.0137	1.4779	2	0	Median	1.067	1.0238	NaN	1	0	Median	1.076	1.1643	60.256	3	1	Plateau	179530000	93995000	85539000	4815700	2414000	2401700	76991000	42248000	34743000	2471600	1256700	1214900	95255000	48077000	47179000	43835	3793	41264	265981;265982;265983;265984;265985;265986;265987	356759;356760;356761;356762;356763;356764;356765	356760	2940		7	
RSAPGGGSKVPQK	2	Acetyl (K)	1309.7102	0.71024735	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	2	By MS/MS	By MS/MS		By MS/MS	15.5	0.5								3	3	2	2		2	15.342	7.101	3	0.0027587	5443	160513_QHF_FH_JSI12Kac_6	67.964	56.431			0.96213	1.083	17.802	6	0	Median	1.3056	1.0931	2.9782	2	0	Median	0.96213	1.1356	5.0466	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72663	0.7965	5.8224	2	0	Median	48009000	25273000	22735000	12413000	5351500	7061200	21872000	10525000	11347000	0	0	0	13724000	9396900	4327500	43836	857	41265	265988;265989;265990;265991;265992;265993	356766;356767;356768;356769;356770;356771;356772	356770	549		7	
RSAPGGGSKVPQKK	3	2 Acetyl (K)	1479.8158	0.81577505	857	P06748	NPM1	Nucleophosmin	yes	yes	2	0	0	3	By matching	By MS/MS		By MS/MS	15.5	0.5								3	3	1	3		2	23.544	15.34	3	0.055629	8927	160513_QHF_FH_JSI10Kac_5	39.005	31.28			0.93291	0.93394	27.649	6	0	Median	1.1071	0.96068	NaN	1	0	Median	1.117	1.3261	23.973	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69349	0.75111	9.0535	2	0	Median	24308000	12834000	11474000	2774800	1563900	1210900	14821000	7151100	7669700	0	0	0	6712500	4119100	2593500	43837	857	41266	265994;265995;265996;265997;265998;265999	356773;356774;356775	356773	549		3	
RSAVNTEEEK	1	Unmodified	1161.5626	0.56258006	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			5.1368	4.6598	2	0.011992	2703	160511_QHF_FH_JSI10i_3	46.001	16.192			0.6143	0.71693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6143	0.71693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18068000	10162000	7906200	0	0	0	18068000	10162000	7906200	0	0	0	0	0	0	43838	2755	41267	266000	356776	356776			1	
RSDDNEKALK	2	Acetyl (K)	1216.6048	0.60477922	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	12.713	5.1587	3	0.049166	5068	160513_QHF_FH_JSI12Kac_4	37.968	23.282			0.75366	0.82149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75366	0.82149	NaN	1	0	Median	3953100	1850200	2102900	0	0	0	0	0	0	0	0	0	3953100	1850200	2102900	43839	1835	41268	266001	356777	356777			0	
RSDLLSPLLSLGQYLWAASLAEK	1	Unmodified	2530.3795	0.3795243	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	100.84	92.731	3	1.2422E-29	52961	160513_QHF_FH_JSI9Kac_6	156.89	147.08			1.113	1.3312	19.838	3	1	Plateau	1.0451	0.90277	NaN	1	0	Median	1.113	1.3312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1314	1.1762	NaN	1	0	Median	796260000	377100000	419160000	113880000	54729000	59149000	568470000	270310000	298160000	0	0	0	113910000	52067000	61846000	43840	3765	41269	266002;266003;266004	356778;356779;356780	356778			2	
RSDLYAVEMK	1	Unmodified	1210.6016	0.6016081	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							2	2	3	3	33.478	32.633	2;3	2.9387E-06	27798	160511_QHF_FH_JSI12i_2	131.82	99.884			0.70952	0.74614	25.969	6	3	Median	0.63651	0.54481	NaN	1	0	Median	0.71883	0.87931	38.183	2	2	Median	0.83633	0.8486	5.7355	2	0	Median	0.63454	0.68321	NaN	1	1	Median	371560000	217460000	154100000	37483000	21232000	16251000	122350000	73695000	48655000	167230000	96327000	70904000	44491000	26206000	18285000	43841	4924	41270	266005;266006;266007;266008;266009;266010;266011;266012;266013;266014	356781;356782;356783;356784;356785;356786;356787;356788;356789;356790	356781			9	
RSDSASSEPVGIYQGFEK	1	Unmodified	1955.9225	0.92248455	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		48.124	48.124	3	0.00018763	42609	160511_QHF_FH_JSI11i_3	69.256	56.457			1.3467	1.2791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3467	1.2791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36188000	16354000	19834000	0	0	0	0	0	0	36188000	16354000	19834000	0	0	0	43842	2232	41271	266015;266016	356791;356792	356791			2	
RSDSVSASER	0	Unmodified	1092.516	0.51596421	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			4.7742	4.2972	2	0.0040516	2349	160511_QHF_FH_JSI10i_3	55.806	29.867			1.2464	1.4281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2464	1.4281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73214000	35705000	37509000	0	0	0	73214000	35705000	37509000	0	0	0	0	0	0	43843	366	41272	266017	356793	356793			1	
RSEAEEAITSFNGHKPPGSSEPITVK	2	Unmodified	2767.3777	0.3776864	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		51.511	50.46	4	1.3887E-09	44149	160511_QHF_FH_JSI11i_3	71.506	65.279			0.83797	1.0547	59.628	3	2	Plateau	2.4054	1.9818	NaN	1	1	Median	1.506	1.6911	NaN	1	1	Median	0.7084	0.65777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	241510000	126610000	114900000	40520000	15749000	24771000	102040000	56484000	45558000	98945000	54377000	44568000	0	0	0	43844	2700	41273	266018;266019;266020	356794;356795;356796;356797	356795			4	
RSEDDLR	0	Unmodified	889.42536	0.42535829	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	5.0482	4.6566	2	0.037141	2549	160511_QHF_FH_JSI11i_2	49.097	6.2276			1.0325	1.1658	21.595	4	0	Median	1.04	0.90418	NaN	1	0	Median	1.0251	1.2488	NaN	1	0	Median	1.483	1.5069	NaN	1	0	Median	0.99356	1.0884	NaN	1	0	Median	240080000	109280000	130800000	56665000	26804000	29861000	65721000	33239000	32482000	84342000	33695000	50647000	33353000	15546000	17807000	43845	1085	41274	266021;266022;266023;266024	356798	356798			1	
RSEDEPPAASASAAPPPQRDEEEPDGVPEK	1	Unmodified	3157.4436	0.44359372	4130	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	33.624	32.89	4	3.0505E-13	29406	160511_QHF_FH_JSI11i_1	83.557	74.824			0.82837	0.8557	72.407	6	3	Median	0.73596	0.61711	62.307	2	2	Median	0.48308	0.58455	37.814	2	1	Median	2.0842	2.0394	NaN	1	0	Median	2.0649	2.1579	NaN	1	0	Median	312740000	146440000	166310000	33185000	22960000	10225000	119230000	83252000	35976000	83940000	24603000	59337000	76389000	15620000	60769000	43846	4130	41275	266025;266026;266027;266028;266029;266030	356799;356800;356801;356802;356803;356804;356805;356806;356807	356799			9	
RSELIAK	1	Unmodified	815.4865	0.48650199	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	2	2	9.4232	9.0182	2	0.011397	6285	160511_QHF_FH_JSI12i_3	71.501	14.22			0.80329	0.81537	63.178	9	3	Median	1.6645	1.3645	75.558	3	2	Plateau	1.3423	1.5873	110.44	2	1	Median	0.88236	0.87339	9.7215	2	0	Median	0.66451	0.70346	32.889	2	0	Median	11590000000	5019400000	6570900000	3608800000	1517500000	2091300000	2691500000	1130900000	1560600000	4134600000	1709100000	2425500000	1155400000	661960000	493480000	43847	2164	41276	266031;266032;266033;266034;266035;266036;266037;266038;266039	356808;356809;356810;356811;356812;356813;356814;356815;356816;356817;356818;356819;356820	356820			13	
RSELVNWYLK	1	Unmodified	1306.7034	0.70337105	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		4.3	3.9			9						1	2	3	5		57.597	56.154	2;3	2.1228E-05	46705	160511_QHF_FH_JSI9i_3	100.48	77.559			0.89241	0.80641	49.763	10	4	Median	0.78525	0.63915	42.91	2	1	Median	0.61496	0.71926	40.936	3	0	Plateau	0.99746	0.95524	61.776	5	3	Median	NaN	NaN	NaN	0	0	Median	535950000	277700000	258250000	123030000	64206000	58823000	129630000	71079000	58547000	283300000	142410000	140890000	0	0	0	43848	2545	41277	266040;266041;266042;266043;266044;266045;266046;266047;266048;266049	356821;356822;356823;356824;356825;356826;356827;356828;356829;356830;356831;356832	356831			12	
RSENEEFVEVGR	0	Unmodified	1449.6848	0.68482046	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	2	2		26.677	26.1	2;3	0.0001084	22195	160511_QHF_FH_JSI11i_3	70.438	59.708			0.77027	0.94566	10.822	4	0	Linear	1.2029	1.0314	NaN	1	0	Median	0.80865	0.9885	NaN	1	0	Median	0.88378	0.85471	8.0348	2	0	Median	NaN	NaN	NaN	0	0	Median	246160000	128060000	118090000	38857000	17154000	21702000	89882000	48372000	41510000	117420000	62535000	54883000	0	0	0	43849	977	41278	266050;266051;266052;266053;266054	356833;356834;356835;356836;356837	356834			5	
RSEVEEVDFAGWLCK	1	Unmodified	1823.8512	0.85123386	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.701	78.701	3	0.0001112	70304	160511_QHF_FH_JSI11i_3	71.08	60.293			0.90951	0.86911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90951	0.86911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18354000	9386400	8968000	0	0	0	0	0	0	18354000	9386400	8968000	0	0	0	43850	1453	41279	266055	356838	356838			1	
RSFEVEEVETPNSTPPR	0	Unmodified	1972.949	0.94903365	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			43.175	41.641	3	7.5833E-07	34766	160511_QHF_FH_JSI10i_3	99.044	82.738			0.80707	0.93535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80707	0.93535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45454000	25787000	19668000	0	0	0	45454000	25787000	19668000	0	0	0	0	0	0	43851	5298	41280	266056	356839	356839			1	
RSFLLDLLNATGK	1	Unmodified	1446.8195	0.81946344	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			2						1	1	1	1		92.981	89.966	3	0.0022802	84615	160511_QHF_FH_JSI11i_3	49.31	36.749			0.87419	0.89819	17.392	3	1	Median	1.058	0.89819	NaN	1	1	Median	0.87419	1.0329	NaN	1	0	Median	0.75952	0.73101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56699000	23678000	33021000	43126000	17449000	25677000	3836400	2148900	1687600	9736100	4080600	5655500	0	0	0	43852	154	41281	266057;266058;266059	356840;356841;356842	356840			3	
RSGHTFTVNPR	0	Unmodified	1270.6531	0.65306682	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	10.7	6.13		1						2		1		1	1	69.089	61.642	3	0.015099	53997	160511_QHF_FH_JSI9i_2	29.936	15.269			3.5149	3.7441	133.14	3	3	Median	0.61958	0.5263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.7675	6.6732	NaN	1	1	Median	3.5149	3.7441	NaN	1	1	Median	134910000	39156000	95756000	116250000	34188000	82061000	0	0	0	15021000	3755000	11266000	3641200	1212700	2428600	43853	3083	41282	266060;266061;266062	356843;356844;356845;356846	356843			4	
RSGLVVEEDLFNTLPPEVK	1	Unmodified	2141.1368	0.13683442	3428	Q8IWT6	LRRC8A	Volume-regulated anion channel subunit LRRC8A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		89.079	89.079	3	0.048935	79355	160511_QHF_FH_JSI11i_3	24.3	1.0914			0.55839	0.52952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55839	0.52952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24688000	12603000	12086000	0	0	0	0	0	0	24688000	12603000	12086000	0	0	0	43854	3428	41283	266063	356847	356847			1	
RSGPTDDGEEEMEEDTVTNGS	0	Unmodified	2253.8815	0.88154353	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.612	33.007	2	4.7083E-47	29477	160511_QHF_FH_JSI10i_1	211.13	211.13			1.0214	1.0703	5.8885	4	0	Median	1.3961	1.1592	NaN	1	0	Median	0.95598	1.1078	NaN	1	0	Median	1.065	1.0341	NaN	1	0	Median	0.97964	1.0237	NaN	1	0	Median	289370000	138310000	151060000	57061000	21174000	35888000	84352000	43692000	40660000	88776000	42898000	45878000	59181000	30551000	28630000	43855	937	41284	266064;266065;266066;266067	356848;356849;356850;356851;356852;356853;356854	356853			7	
RSGPTDDGEEEMEEDTVTNGS	0	Oxidation (M)	2269.8765	0.87645815	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	1	1	By MS/MS				1	0	1									1				34.303	33.048	2	0.0049292	29009	160511_QHF_FH_JSI9i_1	57.159	51.774			1.7082	1.3763	NaN	1	1	Median	1.7082	1.3763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12522000	4210900	8311300	12522000	4210900	8311300	0	0	0	0	0	0	0	0	0	43856	937	41284	266068	356855	356855		512	1	
RSGQVLEVSGSK	1	Unmodified	1245.6677	0.66771383	1189	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			14.528	13.615	3	0.0001424	10740	160511_QHF_FH_JSI9i_3	54.871	49.977			0.89357	0.86071	38.454	2	0	Median	1.3886	1.1296	NaN	1	0	Median	0.57503	0.65579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148420000	67481000	80934000	112090000	46516000	65571000	36329000	20965000	15364000	0	0	0	0	0	0	43857	1189	41285	266069;266070	356856	356856			1	
RSGVAYIAAPSGSAADK	1	Unmodified	1619.8267	0.82673367	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.12			2					5	2	3	3	1	2	36.123	28.581	2;3	2.7982E-05	23134	160511_QHF_FH_JSI9i_3	75.548	60.987			1.0672	0.9624	27.596	8	2	Median	1.0891	0.86965	2.1861	3	0	Plateau	0.90026	1.0283	32.89	3	1	Median	1.051	1.0296	NaN	1	0	Median	1.4941	1.6409	NaN	1	1	Median	214640000	105470000	109160000	193300000	95724000	97579000	18123000	8534400	9588400	1995800	869800	1126000	1216000	344790	871200	43858	1381	41286	266071;266072;266073;266074;266075;266076;266077;266078;266079	356857;356858;356859;356860;356861;356862;356863;356864;356865;356866;356867;356868;356869	356862			13	
RSIADSEESEAYK	1	Unmodified	1483.6791	0.67906638	4533	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		17.599	17.599	2;3	2.8802E-05	14675	160511_QHF_FH_JSI11i_3	71.879	64.84			1.5405	1.4562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5405	1.4562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23081000	9237500	13844000	0	0	0	0	0	0	23081000	9237500	13844000	0	0	0	43859	4533	41287	266080;266081	356870;356871;356872	356871			3	
RSIQFVDWCPTGFK	1	Unmodified	1739.8454	0.84536062	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	1		By MS/MS			9.5	6.5			1						1		2			75.882	72.043	3	0.00017516	38309	160513_QHF_FH_JSI10Kac_6	79.022	72.99			1.396	1.6394	64.737	2	1	Median	NaN	NaN	NaN	0	0	Median	1.396	1.6394	64.737	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	223150000	102410000	120740000	0	0	0	223150000	102410000	120740000	0	0	0	0	0	0	43860	2073;2074	41288	266082;266083	356873;356874;356875	356874			3	
RSLFSEEAANEEK	1	Unmodified	1508.7107	0.71070086	4867	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			28.195	26.87	3	3.1622E-05	22206	160511_QHF_FH_JSI10i_3	85.45	80.467			0.97938	1.1007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97938	1.1007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40399000	19713000	20687000	0	0	0	40399000	19713000	20687000	0	0	0	0	0	0	43861	4867	41289	266084	356876;356877	356877			2	
RSLGEPAAGEGSAK	1	Unmodified	1328.6684	0.66844211	4446	Q9BUL9	RPP25	Ribonuclease P protein subunit p25	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		10.416	10.099	2	0.0094427	7695	160511_QHF_FH_JSI10i_3	49.5	22.386			0.86118	0.87448	24.575	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93541	1.0404	NaN	1	0	Median	0.79284	0.73499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36184000	17081000	19103000	0	0	0	20887000	8361300	12525000	15297000	8719800	6577600	0	0	0	43862	4446	41290	266085;266086;266087	356878;356879;356880;356881	356881			4	
RSLGYAYVNFQQPADAER	0	Unmodified	2084.0076	0.007551579	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	62.745	53.657	3	3.1809E-08	29521	160513_QHF_FH_JSI10Kac_6	112.74	94.205			0.79643	0.91864	6.0632	3	0	Median	1.1139	0.95519	NaN	1	0	Median	0.79643	0.91864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78362	0.84808	NaN	1	0	Median	85881000	46233000	39648000	22593000	11419000	11173000	57556000	32101000	25454000	0	0	0	5732200	2711800	3020400	43863	2385;1009	41291	266088;266089;266090	356882;356883;356884;356885	356885			4	
RSLMPYFLLTQAVR	0	Oxidation (M)	1709.9287	0.92869632	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	1	1	By MS/MS				16	0									1	1				79.441	70.813	3	0.008854	38272	160513_QHF_FH_JSI9Kac_6	51.03	39.416			0.78784	0.67257	NaN	1	1	Median	0.78784	0.67257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18926000	9238600	9687700	18926000	9238600	9687700	0	0	0	0	0	0	0	0	0	43864	313	41292	266091	356886	356886		126	1	
RSLMPYFLLTQAVR	0	Unmodified	1693.9338	0.9337817	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.674	78.048	3	1.3014E-06	43480	160513_QHF_FH_JSI10Kac_6	82.663	70.498			1.0662	1.2708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0662	1.2708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	209840000	96070000	113770000	0	0	0	209840000	96070000	113770000	0	0	0	0	0	0	43865	313	41292	266092	356887;356888	356888			2	
RSLSEQPVMDTATATEQAK	1	Unmodified	2062.0001	8.29396E-05	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	37.616	36.745	3	1.1219E-09	32266	160511_QHF_FH_JSI10i_2	115.57	105.81			0.92114	0.90292	28.282	4	0	Median	0.90144	0.77548	NaN	1	0	Median	1.0171	1.1819	31.336	2	0	Median	0.94127	0.86086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	166580000	83233000	83342000	44701000	16841000	27861000	74690000	41781000	32908000	47184000	24611000	22573000	0	0	0	43866	1142	41293	266093;266094;266095;266096;266097	356889;356890;356891;356892;356893;356894;356895;356896;356897	356896			9	
RSLYALFSQFGHVVDIVALK	1	Unmodified	2262.2525	0.2524733	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.065	89.344	3	0.00030778	51494	160513_QHF_FH_JSI10Kac_6	100.19	84.871			0.44391	0.52422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44391	0.52422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101430000	70034000	31394000	0	0	0	101430000	70034000	31394000	0	0	0	0	0	0	43867	906	41294	266098	356898	356898			1	
RSNIWLAAVTK	1	Unmodified	1257.7194	0.71935547	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			59.756	51.327	3	0.0037298	28333	160513_QHF_FH_JSI10Kac_6	47.189	37.756			1.2324	1.4766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2324	1.4766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9272500	4101000	5171600	0	0	0	9272500	4101000	5171600	0	0	0	0	0	0	43868	4017	41295	266099	356899	356899			1	
RSPNDFALWK	1	Unmodified	1232.6302	0.63020611	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		51.445	50.259	2;3	0.003777	42144	160511_QHF_FH_JSI10i_3	65.347	27.261			1.3389	1.1656	42.966	4	2	Linear	0.74082	0.60695	2.7664	2	0	Median	0.45349	0.52401	NaN	1	1	Median	1.469	1.3488	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165060000	85790000	79270000	54901000	29896000	25005000	38339000	19462000	18877000	71820000	36432000	35388000	0	0	0	43869	1665	41296	266100;266101;266102;266103;266104;266105	356900;356901;356902;356903;356904;356905	356902			5	
RSPPIPLAK	1	Unmodified	977.6022	0.60220045	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			29.155	27.802	2;3	0.011274	23063	160511_QHF_FH_JSI10i_3	36.585	19.914			0.80111	0.76329	5.7871	4	0	Median	0.99776	0.80848	5.2737	2	0	Median	0.64748	0.74284	0.97975	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	330800000	168760000	162040000	163150000	76603000	86546000	167660000	92160000	75496000	0	0	0	0	0	0	43870	1034	41297	266106;266107;266108;266109	356906;356907;356908;356909	356907			4	
RSPQLDALK	1	Unmodified	1026.5822	0.58219329	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				23.071	21.773	2	0.0061018	17568	160511_QHF_FH_JSI9i_3	55.064	3.7179			1.6491	1.3356	NaN	1	0	Median	1.6491	1.3356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57189000	26515000	30674000	57189000	26515000	30674000	0	0	0	0	0	0	0	0	0	43871	3248	41298	266110	356910;356911	356911			2	
RSPSAPAATSSASSSTSSYK	1	Unmodified	1928.9076	0.90756276	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			16.196	15.163	3	8.1767E-06	11997	160511_QHF_FH_JSI9i_3	73.21	67.088			1.5441	1.4917	65.789	2	0	Median	1.1611	0.93683	NaN	1	0	Median	2.0535	2.3753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29077000	12563000	16514000	18219000	8723200	9496100	10858000	3840100	7017400	0	0	0	0	0	0	43872	2654	41299	266111;266112	356912	356912			1	
RSPSVSSPEPAEK	1	Unmodified	1369.6838	0.68375782	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				13.094	12.201	3	0.0019641	9589	160511_QHF_FH_JSI9i_3	58.268	47.658			2.0031	1.6095	NaN	1	1	Median	2.0031	1.6095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24268000	6216800	18052000	24268000	6216800	18052000	0	0	0	0	0	0	0	0	0	43873	5474	41300	266113	356913	356913			1	
RSPYNYLQVAYFK	1	Unmodified	1647.8409	0.84092717	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	73.787	65.516	2;3	3.2423E-24	36059	160513_QHF_FH_JSI10Kac_6	161.62	119.62			0.84297	0.95947	15.636	5	0	Median	0.9262	0.78858	13.571	2	0	Median	0.81639	0.96272	0.47766	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0325	1.0883	NaN	1	0	Median	495710000	271600000	224110000	105170000	56923000	48250000	343290000	190410000	152880000	0	0	0	47245000	24263000	22982000	43874	2806	41301	266114;266115;266116;266117;266118	356914;356915;356916;356917;356918;356919;356920;356921	356920			8	
RSQEDEISSPVNK	1	Unmodified	1487.7216	0.72159989	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	17.905	17.924	3	0.0013388	14951	160511_QHF_FH_JSI11i_3	49.298	41.754			0.8291	0.80715	11.5	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93721	0.87553	NaN	1	0	Median	0.73346	0.74412	NaN	1	0	Median	72498000	41330000	31168000	0	0	0	0	0	0	38128000	20792000	17336000	34370000	20538000	13832000	43875	2977	41302	266119;266120	356922	356922			1	
RSQPEPGVADEDQTA	0	Unmodified	1598.7172	0.7172428	4446	Q9BUL9	RPP25	Ribonuclease P protein subunit p25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.474	16.991	2	0.00019453	14368	160511_QHF_FH_JSI11i_1	84.352	78.38			0.99331	1.0024	11.206	4	0	Median	1.0273	0.83112	NaN	1	0	Median	0.89186	1.0782	NaN	1	0	Median	1.0539	1.0189	NaN	1	0	Median	0.96048	0.98623	NaN	1	0	Median	317320000	157220000	160090000	59190000	28304000	30886000	79997000	36116000	43880000	77210000	36203000	41007000	100920000	56601000	44321000	43876	4446	41303	266121;266122;266123;266124	356923;356924;356925;356926;356927;356928;356929	356924			7	
RSQYPEIIFLGTGSAIPMK	1	Unmodified	2107.1136	0.11359655	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.6	5.2			4						1	2	2	1		88.79	87.011	3	2.5035E-05	74689	160511_QHF_FH_JSI10i_3	70.114	60.326			0.78957	0.74644	24.133	5	3	Median	1.1317	0.93149	27.795	2	2	Median	0.56026	0.641	12.268	2	0	Median	0.78957	0.74644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	193770000	103840000	89929000	73918000	38550000	35368000	96884000	54999000	41885000	22964000	10288000	12676000	0	0	0	43877	4348	41304	266125;266126;266127;266128;266129	356930;356931;356932;356933;356934;356935	356931			5	
RSSGAAPAPASASAPAPVPGGEAER	0	Unmodified	2260.1196	0.11962122	5244	Q9UBP0	SPAST	Spastin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			31.345	30.076	3	2.2857E-06	24366	160511_QHF_FH_JSI9i_3	57.432	55.86			0.76755	1.103	26.317	3	0	Plateau	1.0166	0.85157	36.584	2	0	Median	0.69877	0.78313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86388000	44684000	41703000	63868000	30692000	33176000	22520000	13992000	8527100	0	0	0	0	0	0	43878	5244	41305	266130;266131;266132	356936;356937;356938;356939;356940;356941;356942	356938			7	
RSSGFISELPSEEGK	1	Unmodified	1621.7948	0.79476484	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			45.835	44.252	3	8.445E-05	36947	160511_QHF_FH_JSI10i_3	94.007	83.668			0.91727	0.89219	6.7544	2	1	Median	1.1696	0.93583	NaN	1	0	Median	0.71935	0.85058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136130000	76584000	59544000	58765000	30915000	27850000	77362000	45668000	31694000	0	0	0	0	0	0	43879	3003	41306	266133;266134;266135	356943;356944;356945;356946;356947	356943			5	
RSSLDEK	1	Unmodified	833.4243	0.42429566	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		0.66895	0.66895	2	0.037617	323	160511_QHF_FH_JSI11i_3	60.76	0			1.6077	1.4399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6077	1.4399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48095000	20851000	27243000	0	0	0	0	0	0	48095000	20851000	27243000	0	0	0	43880	5065	41307	266136	356948	356948			1	
RSSNEVLNVIQGNTTVDELMMR	0	Unmodified	2505.2316	0.23155621	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	1	By MS/MS				2.5	0.5		1	1							2				90.664	89.922	3	0.0029888	73754	160511_QHF_FH_JSI9i_3	39.188	25.356			0.94159	0.8092	2.4731	2	2	Median	0.94159	0.8092	2.4731	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32241000	19784000	12457000	32241000	19784000	12457000	0	0	0	0	0	0	0	0	0	43881	5442	41308	266137;266138	356949;356950	356949			2	
RSSSAEESGQDVLENTFSQK	1	Unmodified	2198.0087	0.0087333705	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			50.589	49.022	3	0.0040718	40964	160511_QHF_FH_JSI10i_3	43.116	33.832			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43882	2574	41309	266139	356951	356951			1	
RSTDFTSR	0	Unmodified	968.46756	0.46755746	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			7.0265	6.4897	2	0.0077417	4412	160511_QHF_FH_JSI9i_3	58.981	36.85			0.90491	0.86882	10.771	2	0	Median	0.98489	0.80511	NaN	1	0	Median	0.83143	0.93758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83659000	42259000	41400000	60582000	29065000	31517000	23077000	13194000	9882800	0	0	0	0	0	0	43883	300	41310	266140;266141	356952;356953	356953			2	
RSTQGVTLTDLQEAEK	1	Unmodified	1774.9061	0.9061062	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			43.807	42.261	3	0.00010653	35265	160511_QHF_FH_JSI10i_3	70.783	58.76			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43884	227	41311	266142	356954	356954			1	
RSTTENFFLK	1	Unmodified	1241.6404	0.64043645	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			40.604	39.095	2	0.011272	31795	160511_QHF_FH_JSI9i_3	46.891	17.082			1.3461	1.2951	1.1283	2	0	Median	1.5864	1.3055	NaN	1	0	Median	1.1423	1.2848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44300000	16108000	28191000	21369000	7656100	13713000	22931000	8452300	14478000	0	0	0	0	0	0	43885	5599	41312	266143;266144	356955	356955			1	
RSTTLDAGNIK	1	Unmodified	1174.6306	0.63060004	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							3	2	2		16.301	15.584	2;3	0.00018772	12573	160511_QHF_FH_JSI10i_3	68.536	50.672			1.1282	0.95609	30.358	7	0	Median	1.1282	0.55076	35.698	3	0	Plateau	0.63935	0.75039	19.966	2	0	Median	1.2673	1.1664	7.8405	2	0	Median	NaN	NaN	NaN	0	0	Median	606600000	347630000	258960000	218710000	137380000	81322000	268240000	170520000	97713000	119650000	39725000	79930000	0	0	0	43886	521	41313	266145;266146;266147;266148;266149;266150;266151	356956;356957;356958;356959;356960;356961;356962;356963;356964;356965;356966;356967	356960			12	
RSTVNEKPK	2	Acetyl (K)	1099.5986	0.59857163	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.497								5	4	2	3	2	2	8.5109	-0.099933	3	7.9639E-05	3037	160513_QHF_FH_JSI11Kac_5	117.7	81.274			0.86029	0.96255	22.092	9	0	Median	0.81581	0.69219	0.94354	2	0	Median	0.87887	1.0358	8.9749	3	0	Median	1.1967	1.1843	20.8	2	0	Median	0.84194	0.90435	1.2622	2	0	Median	342050000	177810000	164240000	61904000	32733000	29172000	90491000	47952000	42539000	83795000	36434000	47361000	105860000	60693000	45170000	43887	3063	41314	266152;266153;266154;266155;266156;266157;266158;266159;266160	356968;356969;356970;356971;356972;356973;356974;356975;356976;356977;356978;356979	356971	2753		12	
RSVENQESVEIINDLK	1	Unmodified	1871.9589	0.95887005	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		56.625	56.625	3	0.010745	50260	160511_QHF_FH_JSI11i_3	43.955	33.897			1.7602	1.5932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7602	1.5932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33369000	16413000	16956000	0	0	0	0	0	0	33369000	16413000	16956000	0	0	0	43888	3819	41315	266161	356980	356980			1	
RSVGELPSTVESLQK	1	Unmodified	1628.8733	0.87334951	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.61		5	7					2	2	5	5	4	2	49.756	46.556	2;3	5.0181E-07	39020	160511_QHF_FH_JSI10i_3	129.29	117.15			1.0353	1.0757	13.705	16	3	Median	1.3068	1.0432	14.844	5	0	Median	0.92162	1.0675	9.9576	5	0	Median	1.1927	1.1309	17.71	4	3	Median	0.99903	1.0855	20.383	2	0	Median	2463500000	1106000000	1357500000	463730000	196670000	267060000	861990000	418660000	443330000	1130500000	486810000	643740000	7234800	3819800	3415000	43889	2252	41316	266162;266163;266164;266165;266166;266167;266168;266169;266170;266171;266172;266173;266174;266175;266176;266177	356981;356982;356983;356984;356985;356986;356987;356988;356989;356990;356991;356992;356993;356994;356995;356996;356997;356998;356999;357000	356986			20	
RSVPSEK	1	Unmodified	801.43447	0.43446642	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			4.7171	4.2289	2	0.042633	2263	160511_QHF_FH_JSI10i_3	46.426	10.24			0.90345	0.88357	15.316	2	0	Median	1.0046	0.79288	NaN	1	0	Median	0.81247	0.98464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	252330000	133670000	118660000	166400000	85840000	80558000	85933000	47830000	38103000	0	0	0	0	0	0	43890	3583	41317	266178;266179	357001	357001			1	
RSVSDNDIR	0	Unmodified	1060.5261	0.52613497	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	9.8	6.37		2						3		1	2	1	1	8.9583	3.143	3	3.5472E-05	5326	160511_QHF_FH_JSI9i_2	89.679	74.528			1.2484	1.1575	57.404	5	0	Median	1.3385	1.1575	NaN	1	0	Median	1.0864	1.2572	113.62	2	0	Median	1.2484	1.2453	NaN	1	0	Median	0.94639	1.0392	NaN	1	0	Median	337990000	151290000	186690000	184580000	77624000	106950000	147040000	70722000	76318000	3783400	1640700	2142700	2584500	1306900	1277600	43891	1846	41318	266180;266181;266182;266183;266184	357002;357003;357004	357002			3	
RSVVDSLDIESMTIEDEYSGPK	1	Unmodified	2469.1581	0.15809972	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	84.545	84.545	3	2.9172E-14	75430	160511_QHF_FH_JSI11i_3	126.02	122.53			0.5295	0.49116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5295	0.49116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88772000	48150000	40622000	0	0	0	0	0	0	88772000	48150000	40622000	0	0	0	43892	1793	41319	266185;266186	357005;357006;357007	357005			3	
RSYDVPPPPMEPDHPFYSNISK	1	Unmodified	2572.2057	0.20565904	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							1	7	1		63.134	61.733	3;4	5.5456E-08	51784	160511_QHF_FH_JSI10i_3	86.625	83.469			1.0707	1.2126	38.137	6	3	Median	2.938	2.4048	NaN	1	1	Median	1.0213	1.1423	22.193	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250620000	127080000	123550000	23509000	6330300	17179000	227110000	120750000	106370000	0	0	0	0	0	0	43893	1144	41320	266187;266188;266189;266190;266191;266192;266193;266194;266195	357008;357009;357010;357011;357012;357013;357014;357015;357016;357017;357018;357019;357020	357014			12	
RSYEDDDDMDLQPNK	1	Unmodified	1839.7581	0.75812133	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	1		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	30.977	30.6	3	0.01852	27568	160511_QHF_FH_JSI12i_1	32.815	26.911			1.3461	1.2535	5.0112	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.099	1.2535	NaN	1	1	Median	1.3843	1.3608	NaN	1	0	Median	1.2042	1.2427	NaN	1	0	Median	115170000	49212000	65961000	0	0	0	35348000	14682000	20666000	44901000	19061000	25840000	34925000	15469000	19456000	43894	4416	41321	266196;266197;266198	357021;357022	357021			2	
RSYVTMTATK	1	Unmodified	1156.591	0.59104341	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				24.669	17.176	3	0.012164	9695	160513_QHF_FH_JSI9Kac_6	39.179	32.52			0.9095	0.79802	NaN	1	0	Median	0.9095	0.79802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2976900	1742600	1234200	2976900	1742600	1234200	0	0	0	0	0	0	0	0	0	43895	5296	41322	266199	357023	357023			0	
RTAEHEAAQQDLQSK	1	Unmodified	1710.8285	0.82852458	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								2	2		8.0024	7.7461	2;3	4.6901E-06	5318	160511_QHF_FH_JSI11i_3	124.25	105.42			0.91663	1.0395	51.4	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.94275	1.1132	11.466	2	0	Median	0.52876	0.48386	29.179	2	1	Median	NaN	NaN	NaN	0	0	Median	192480000	110310000	82162000	0	0	0	124680000	67420000	57264000	67792000	42893000	24898000	0	0	0	43896	3328	41323	266200;266201;266202;266203	357024;357025;357026;357027	357024			4	
RTAEQASKPK	2	Acetyl (K)	1156.62	0.62003536	406	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		7.3368	-2.1753	3	0.055464	2701	160513_QHF_FH_JSI11Kac_5	37.18	27.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43897	406	41324	266204	357028	357028			1	
RTAPEDFLGK	1	Unmodified	1132.5877	0.58767259	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	32.742	32.244	2;3	0.00035278	27711	160511_QHF_FH_JSI11i_3	77.379	54.025			1.1383	1.1749	59.325	6	5	Median	NaN	NaN	NaN	0	0	Median	0.92652	1.0616	35.611	2	2	Median	2.0748	1.9348	91.809	2	1	Median	1.4413	1.4881	65.408	2	2	Median	247360000	106370000	140990000	0	0	0	64327000	33714000	30613000	100310000	35459000	64854000	82719000	37197000	45522000	43898	4076	41325	266205;266206;266207;266208;266209;266210	357029;357030;357031;357032;357033;357034;357035	357029			7	
RTAQEVETYR	0	Unmodified	1251.6208	0.62076364	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			10.97	10.336	2;3	0.0013634	7975	160511_QHF_FH_JSI10i_3	44.847	14.499			0.85668	0.97657	6.2691	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85668	0.97657	6.2691	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	205100000	107550000	97550000	0	0	0	205100000	107550000	97550000	0	0	0	0	0	0	43899	1128	41326	266211;266212	357036;357037	357037			2	
RTDDIPVWDQEFLK	1	Unmodified	1760.8733	0.87334951	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	2	5	4	77.207	76.602	2;3	2.3703E-30	66093	160511_QHF_FH_JSI12i_2	156.24	149.66			0.93241	1.072	38.867	13	7	Plateau	1.1446	0.97536	10.77	2	2	Median	0.65013	0.79139	27.309	2	1	Median	0.78221	0.77939	52.555	5	3	Median	1.0095	1.0735	24.59	4	1	Median	2681800000	1384700000	1297000000	342230000	149990000	192240000	301080000	124850000	176220000	1156500000	656830000	499690000	881940000	453040000	428900000	43900	2057	41327	266213;266214;266215;266216;266217;266218;266219;266220;266221;266222;266223;266224;266225	357038;357039;357040;357041;357042;357043;357044;357045;357046;357047;357048;357049;357050;357051;357052;357053;357054;357055;357056;357057;357058;357059;357060;357061;357062;357063;357064;357065	357046			28	
RTDEAAFQK	1	Unmodified	1064.5251	0.52507234	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.89	6.55	6	8	8				4	13	7	11	11	11	13	11.758	6.8871	2;3	1.7239E-06	6819	160511_QHF_FH_JSI9i_3	130.66	87.409			0.85453	0.90632	20.585	45	5	Median	1.1473	0.96171	26.384	11	0	Plateau	0.82315	0.95646	15.641	11	1	Median	0.94289	0.96492	12.384	11	1	Median	0.82027	0.89879	22.281	12	3	Median	73434000000	32922000000	40512000000	10106000000	3727800000	6378400000	13003000000	6619600000	6383800000	26838000000	12158000000	14681000000	23486000000	10417000000	13069000000	43901	1278	41328	266226;266227;266228;266229;266230;266231;266232;266233;266234;266235;266236;266237;266238;266239;266240;266241;266242;266243;266244;266245;266246;266247;266248;266249;266250;266251;266252;266253;266254;266255;266256;266257;266258;266259;266260;266261;266262;266263;266264;266265;266266;266267;266268;266269;266270;266271	357066;357067;357068;357069;357070;357071;357072;357073;357074;357075;357076;357077;357078;357079;357080;357081;357082;357083;357084;357085;357086;357087;357088;357089;357090;357091;357092;357093;357094;357095;357096;357097;357098;357099;357100;357101;357102;357103;357104;357105;357106;357107;357108;357109;357110;357111;357112;357113;357114;357115;357116;357117;357118;357119;357120;357121;357122;357123;357124;357125;357126;357127;357128;357129;357130;357131;357132;357133;357134;357135;357136;357137;357138;357139	357100			71	
RTDIFGVEETAIGK	1	Unmodified	1534.7991	0.79912193	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	60.676	60.267	2	6.51E-06	53492	160511_QHF_FH_JSI11i_3	123.28	98.422			0.88263	0.80673	6.5724	3	2	Median	0.88263	0.74711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91739	0.8515	NaN	1	1	Median	0.80792	0.80673	NaN	1	0	Median	303900000	151470000	152420000	40827000	20294000	20533000	0	0	0	111780000	51635000	60145000	151290000	79546000	71747000	43902	2676	41329	266272;266273;266274	357140;357141;357142	357140			3	
RTDYTPFSCLK	1	Unmodified	1386.6602	0.66018561	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		44.942	44.942	3	0.022835	39674	160511_QHF_FH_JSI11i_3	34.75	22.831			1.5398	1.4017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5398	1.4017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32425000	12810000	19615000	0	0	0	0	0	0	32425000	12810000	19615000	0	0	0	43903	1670	41330	266275	357143	357143			1	
RTDYVSPTASALR	0	Unmodified	1435.7419	0.74194141	4539	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				38.745	37.254	4	0.037623	30629	160511_QHF_FH_JSI9i_3	19.74	5.1787			0.82475	0.69032	NaN	1	0	Median	0.82475	0.69032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19012000	10281000	8731000	19012000	10281000	8731000	0	0	0	0	0	0	0	0	0	43904	4539	41331	266276	357144	357144			0	
RTEEGPTLSYGR	0	Unmodified	1364.6684	0.66844211	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			21.976	20.772	2;3	0.00070954	17056	160511_QHF_FH_JSI10i_3	56.295	45.297			0.84086	0.9534	1.7394	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84086	0.9534	1.7394	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69504000	44885000	24619000	0	0	0	69504000	44885000	24619000	0	0	0	0	0	0	43905	1556	41332	266277;266278	357145;357146	357145			2	
RTEFAGDK	1	Unmodified	922.45084	0.45084476	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		6.3749	6.1267	2	0.0093538	3923	160511_QHF_FH_JSI11i_3	56.258	37.164			1.0249	1.0681	16.719	2	0	Median	NaN	NaN	NaN	0	0	Median	1.025	1.2021	NaN	1	0	Median	1.0248	0.94899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	266770000	132600000	134170000	0	0	0	44810000	21591000	23219000	221960000	111010000	110950000	0	0	0	43906	346	41333	266279;266280	357147;357148	357147			2	
RTEFAGDKFKEEK	3	Acetyl (K)	1625.8049	0.80493559	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	1	0	0	3			By MS/MS		14	0							1					1		63.944	52.88	2	0.0066984	29770	160513_QHF_FH_JSI11Kac_4	83.862	34.881			0.99896	0.98918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99896	0.98918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99657000	50593000	49064000	0	0	0	0	0	0	99657000	50593000	49064000	0	0	0	43907	346	41334	266281	357149	357149	173;174		1	
RTEGVGPGVPGEVEMVK	1	Unmodified	1739.8876	0.88761936	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	1	3	47.648	47.248	2;3	0.00011242	41722	160511_QHF_FH_JSI11i_3	64.298	59.394			0.96721	0.90198	28.308	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0484	1.2958	NaN	1	1	Median	0.96721	0.90198	NaN	1	0	Median	0.72501	0.74169	NaN	1	1	Median	415320000	229450000	185860000	0	0	0	101100000	59265000	41830000	134330000	49744000	84583000	179890000	120450000	59447000	43908	1289	41335	266282;266283;266284;266285;266286	357150;357151;357152;357153;357154;357155	357151			6	
RTELFLK	1	Unmodified	905.53345	0.53345218	665	O95249	GOSR1	Golgi SNAP receptor complex member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	30.446	29.516	2;3	0.021009	25096	160511_QHF_FH_JSI11i_3	33.797	18.135			1.1012	1.0767	20.294	6	0	Median	1.3219	1.0792	17.813	2	0	Median	1.0557	1.2193	8.0809	2	0	Median	1.0952	1.0068	NaN	1	0	Median	0.71674	0.7427	NaN	1	0	Median	299220000	142110000	157100000	98530000	38572000	59958000	92153000	50705000	41448000	69437000	31878000	37559000	39095000	20955000	18140000	43909	665	41336	266287;266288;266289;266290;266291;266292	357156;357157;357158;357159;357160	357156			5	
RTEMENEFVLIK	1	Oxidation (M)	1523.7654	0.76537896	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.24		2	2					4	3	3	3	2	3	53.871	47.263	3	1.5584E-08	25503	160513_QHF_FH_JSI9Kac_5	108.56	96.003		+	0.92489	1.0247	20.781	11	2	Median	0.92025	0.79071	13.681	3	0	Median	0.81112	0.99834	29.319	3	1	Median	1.2839	1.229	12.365	2	1	Median	1.0494	1.0523	1.6792	3	0	Plateau	745390000	350680000	394710000	68488000	33748000	34740000	108600000	52692000	55913000	218790000	104740000	114060000	349500000	159500000	190000000	43910	51	41337	266293;266294;266295;266296;266297;266298;266299;266300;266301;266302;266303	357161;357162;357163;357164;357165;357166;357167;357168;357169;357170;357171;357172;357173;357174;357175;357176;357177	357164		22	15	
RTEMENEFVLIK	1	Unmodified	1507.7705	0.77046434	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		10	8						8	6	6	8	6	61.489	58.123	2;3	9.8602E-16	49976	160511_QHF_FH_JSI12i_3	156.51	119.98		+	0.90471	0.93915	17.716	26	3	Median	0.8998	0.75654	10.948	6	0	Median	0.78785	0.9313	9.7642	6	0	Median	0.99505	0.99432	16.77	8	3	Median	0.92548	0.98738	20.259	6	0	Median	8600700000	4330900000	4269800000	1046000000	493980000	552020000	1401600000	741360000	660280000	3733800000	1848700000	1885100000	2419300000	1246800000	1172400000	43911	51	41337	266304;266305;266306;266307;266308;266309;266310;266311;266312;266313;266314;266315;266316;266317;266318;266319;266320;266321;266322;266323;266324;266325;266326;266327;266328;266329	357178;357179;357180;357181;357182;357183;357184;357185;357186;357187;357188;357189;357190;357191;357192;357193;357194;357195;357196;357197;357198;357199;357200;357201;357202;357203;357204;357205;357206;357207;357208;357209;357210;357211;357212;357213;357214;357215;357216;357217;357218;357219;357220;357221;357222;357223;357224;357225;357226;357227;357228;357229;357230;357231;357232;357233;357234;357235;357236;357237;357238;357239	357226			62	
RTEMENEFVLIKK	2	Unmodified	1635.8654	0.86542736	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3.9	4.06		4	5						1	3	5	2		50.304	48.577	3;4	1.2789E-05	40600	160511_QHF_FH_JSI10i_3	124.45	105.99		+	1.0413	1.0119	21.825	10	2	Median	0.92996	0.80152	19.481	3	1	Plateau	0.73164	0.89967	29.3	5	1	Median	1.077	1.0325	0.26627	2	0	Median	NaN	NaN	NaN	0	0	Median	1611800000	873500000	738320000	237140000	109640000	127500000	576940000	337660000	239280000	797740000	426210000	371540000	0	0	0	43912	51	41338	266330;266331;266332;266333;266334;266335;266336;266337;266338;266339	357240;357241;357242;357243;357244;357245;357246;357247;357248;357249	357242			10	
RTEMENEFVLIKK	2	Oxidation (M)	1651.8603	0.86034198	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	2		By MS/MS			3	0			2								2			39.08	37.589	3	0.00057446	31287	160511_QHF_FH_JSI10i_3	59.607	38.654		+	0.96256	1.1229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96256	1.1229	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37667000	19115000	18552000	0	0	0	37667000	19115000	18552000	0	0	0	0	0	0	43913	51	41338	266340;266341	357250;357251	357251		22	2	
RTESAYDWTSLSSSSIK	1	Unmodified	1916.9116	0.91158551	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		57.404	57.404	3	1.1302E-06	50855	160511_QHF_FH_JSI11i_3	84.035	75.034			0.76727	0.70915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76727	0.70915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68929000	43340000	25589000	0	0	0	0	0	0	68929000	43340000	25589000	0	0	0	43914	3200	41339	266342;266343	357252;357253	357252			2	
RTFEDISEK	1	Unmodified	1123.551	0.55095274	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	20.028	19.564	2	0.0072566	16388	160511_QHF_FH_JSI11i_3	53.756	31.67			0.73447	0.66327	47.529	2	0	Median	1.0641	0.92821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50694	0.47395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80603000	48252000	32351000	30310000	15511000	14799000	0	0	0	50293000	32741000	17551000	0	0	0	43915	1629	41340	266344;266345;266346	357254;357255;357256;357257	357254			4	
RTGAIVDVPVGEELLGR	0	Unmodified	1779.9843	0.98429694	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		4	12							6	5	4	1	76.117	75.328	2;3	2.6548E-06	61618	160511_QHF_FH_JSI9i_3	97.284	87.003			1.0526	1.0596	10.952	15	2	Median	1.2283	1.0486	17.161	5	0	Median	0.91807	1.1025	5.7941	5	0	Median	1.0858	1.0285	4.8281	4	2	Median	1.1306	1.1257	NaN	1	0	Median	3072300000	1467700000	1604600000	1049500000	444350000	605140000	1301400000	682570000	618830000	643990000	301190000	342810000	77383000	39564000	37818000	43916	1263	41341	266347;266348;266349;266350;266351;266352;266353;266354;266355;266356;266357;266358;266359;266360;266361;266362	357258;357259;357260;357261;357262;357263;357264;357265;357266;357267;357268;357269;357270;357271;357272;357273;357274;357275;357276;357277;357278;357279;357280;357281;357282;357283;357284;357285	357273			28	
RTGETGIEETILEGHLGVTK	1	Unmodified	2139.1172	0.11716161	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		64.967	64.967	3	7.4434E-07	57869	160511_QHF_FH_JSI11i_3	92.932	86.81			1.7281	1.6306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7281	1.6306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75781000	30470000	45310000	0	0	0	0	0	0	75781000	30470000	45310000	0	0	0	43917	3921	41342	266363	357286;357287	357287			2	
RTGGPAYGPSSDVSTASETESEK	1	Unmodified	2312.0404	0.040427429	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			27.094	25.926	3	4.8716E-05	22336	160511_QHF_FH_JSI9i_2	50.426	37.993			0.82361	0.82461	11.164	2	2	Median	1.0341	0.89234	NaN	1	1	Median	0.65598	0.76201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30288000	15782000	14506000	19698000	8570100	11128000	10589000	7211700	3377600	0	0	0	0	0	0	43918	1726	41343	266364;266365	357288;357289	357289			2	
RTGQPMIHIYLDK	1	Unmodified	1570.829	0.82898227	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	1	3	55.347	46.085	3;4	0.0024216	25184	160513_QHF_FH_JSI10Kac_6	47.037	33.619			1.3469	1.1604	38.664	9	6	Median	1.2852	1.0949	8.2144	2	2	Median	0.85201	1.0048	8.1302	3	2	Median	1.427	1.3995	NaN	1	0	Median	1.5151	1.6828	25.726	3	2	Plateau	155000000	76294000	78709000	28137000	11668000	16469000	85069000	47974000	37095000	6624800	3607400	3017400	35172000	13045000	22127000	43919	2178	41344	266366;266367;266368;266369;266370;266371;266372;266373;266374;266375	357290;357291;357292;357293;357294;357295;357296;357297;357298;357299;357300;357301	357299			11	
RTGQPMIHIYLDK	1	Oxidation (M)	1586.8239	0.8238969	2178	Q01844	EWSR1	RNA-binding protein EWS	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			48.856	39.934	3	0.035342	21453	160513_QHF_FH_JSI9Kac_6	33.008	24.624			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43920	2178	41344	266376;266377	357302;357303	357302			2	
RTGSNISGASSDISLDEQYK	1	Unmodified	2127.008	0.008005089	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.628	41.094	3	1.5658E-05	34210	160511_QHF_FH_JSI10i_3	67.866	52.274			0.87162	0.97539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87162	0.97539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39479000	21059000	18420000	0	0	0	39479000	21059000	18420000	0	0	0	0	0	0	43921	1201	41345	266378	357304;357305	357304			2	
RTGYESGEYEMLGEGLGVK	1	Unmodified	2073.9677	0.96772018	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	63.725	63.135	2;3	9.3646E-07	54032	160511_QHF_FH_JSI12i_3	96.487	91.87			1.0669	1.0835	16.334	8	1	Median	1.1243	0.94448	NaN	1	0	Median	0.93791	1.1597	NaN	1	0	Median	1.3488	1.3331	23.038	3	1	Median	1.0471	1.0612	6.6184	3	0	Median	684830000	332260000	352560000	69880000	38686000	31194000	87029000	40784000	46246000	210700000	101440000	109250000	317220000	151350000	165870000	43922	2441	41346	266379;266380;266381;266382;266383;266384;266385;266386	357306;357307;357308;357309;357310;357311;357312;357313;357314;357315;357316	357313			11	
RTIAQDYGVLK	1	Unmodified	1262.6983	0.69828568	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	6.21		9	13					3	8	8	8	11	6	39.644	36.026	2;3	7.1861E-18	31271	160511_QHF_FH_JSI11i_3	156.51	121			0.89862	0.81925	42.872	33	3	Median	0.94177	0.8054	7.1577	8	0	Median	0.99149	1.1646	31.906	8	1	Median	0.89862	0.89029	61.958	11	2	Median	0.63111	0.68236	14.232	6	0	Median	46918000000	24930000000	21988000000	11702000000	5551500000	6150300000	10940000000	5365200000	5574500000	21452000000	12216000000	9235500000	2825200000	1797500000	1027700000	43923	2249	41347	266387;266388;266389;266390;266391;266392;266393;266394;266395;266396;266397;266398;266399;266400;266401;266402;266403;266404;266405;266406;266407;266408;266409;266410;266411;266412;266413;266414;266415;266416;266417;266418;266419	357317;357318;357319;357320;357321;357322;357323;357324;357325;357326;357327;357328;357329;357330;357331;357332;357333;357334;357335;357336;357337;357338;357339;357340;357341;357342;357343;357344;357345;357346;357347;357348;357349;357350;357351;357352;357353;357354;357355;357356;357357;357358;357359;357360;357361;357362;357363;357364;357365;357366;357367;357368;357369;357370;357371;357372;357373;357374;357375;357376;357377;357378;357379	357321			61	
RTIGSGEPGVPTK	1	Unmodified	1297.699	0.69901396	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.289	19.051	3	0.037797	15263	160511_QHF_FH_JSI9i_3	18.096	8.4085			0.62728	0.51723	NaN	1	0	Median	0.62728	0.51723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23407000	13438000	9969000	23407000	13438000	9969000	0	0	0	0	0	0	0	0	0	43924	2956	41348	266420	357380	357380			1	
RTILEMLLGFLK	1	Unmodified	1432.8476	0.84759245	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			100.2	94.479	2;3	8.1513E-06	55620	160513_QHF_FH_JSI10Kac_6	92.925	71.972			0.95	1.1158	20.344	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95	1.1158	20.344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131900000	77478000	54421000	0	0	0	131900000	77478000	54421000	0	0	0	0	0	0	43925	4258	41349	266421;266422	357381;357382;357383	357382			3	
RTIQFVDWCPTGFK	1	Unmodified	1753.861	0.86101068	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	no	no	0	0	0	1	By matching		By matching	By MS/MS	16	0									3	1		1	1	78.443	69.318	3	0.0055339	36553	160513_QHF_FH_JSI12Kac_6	43.861	32.421			0.83471	0.91671	20.545	3	0	Plateau	1.4253	1.1627	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1146	1.0682	NaN	1	0	Median	0.77335	0.78674	NaN	1	0	Median	54444000	26449000	27995000	16001000	4829100	11172000	0	0	0	18571000	10462000	8108800	19872000	11158000	8714800	43926	4359	41350	266423;266424;266425	357384	357384			1	
RTLDSMNSK	1	Unmodified	1050.5128	0.51279309	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			8.3654	7.7942	2	0.00050097	5579	160511_QHF_FH_JSI9i_3	96.331	64.397			1.2446	1.2065	7.9154	2	1	Median	1.5552	1.276	NaN	1	1	Median	0.99603	1.1408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86987000	40230000	46757000	40140000	16943000	23197000	46847000	23287000	23559000	0	0	0	0	0	0	43927	1042	41351	266426;266427	357385;357386;357387	357387			3	
RTLEGELHDLR	0	Unmodified	1337.7052	0.70516197	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		2	4							4	2			35.038	33.738	3;4	0.0028116	27598	160511_QHF_FH_JSI10i_3	40.025	32.3			1.1007	1.1503	17.887	6	1	Median	1.2492	1.0621	20.133	4	1	Median	1.0314	1.1915	6.1179	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254210000	117670000	136530000	109740000	50320000	59417000	144470000	67354000	77117000	0	0	0	0	0	0	43928	791	41352	266428;266429;266430;266431;266432;266433	357388;357389;357390;357391;357392	357388			4	
RTLLFTFNVPGSGNTYPK	1	Unmodified	2011.0527	0.052710858	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	3	1	1	79.822	72.212	2;3	1.5669E-05	39180	160513_QHF_FH_JSI11Kac_6	81.723	64.645			0.8541	1.0459	21.967	7	4	Linear	0.99688	0.8424	1.7403	2	2	Median	0.87636	1.0569	33.972	3	2	Plateau	0.68464	0.65382	NaN	1	0	Median	0.75386	0.82003	NaN	1	0	Median	1184900000	641120000	543780000	439580000	230270000	209310000	637430000	346730000	290700000	47551000	27630000	19921000	60350000	36491000	23859000	43929	3959	41353	266434;266435;266436;266437;266438;266439;266440	357393;357394;357395;357396;357397;357398;357399;357400;357401	357393			9	
RTLNAEGTDALGPNVDGTSVSPGDTEPMIR	0	Unmodified	3069.4673	0.46730605	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		64.93	64.513	3	9.4843E-17	57420	160511_QHF_FH_JSI11i_3	90.946	85.839			0.98636	1.029	11.138	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8032	0.95109	NaN	1	0	Median	1.2113	1.1133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103530000	57287000	46244000	0	0	0	50226000	28990000	21236000	53305000	28297000	25008000	0	0	0	43930	2911	41354	266441;266442	357402;357403	357402			2	
RTNPPGGKGSGIFDESTPVQTR	1	Acetyl (K)	2342.1615	0.16148604	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	57.258	47.334	3	7.1785E-16	25530	160513_QHF_FH_JSI11Kac_6	120.32	99.728			1.1253	1.1951	76.768	6	0	Median	3.0113	2.5855	NaN	1	0	Median	2.0181	2.375	2.8495	2	0	Median	0.62667	0.61355	0.016802	2	0	Median	0.54865	0.58133	NaN	1	0	Median	158780000	64211000	94565000	25037000	3234900	21802000	73707000	25129000	48578000	28851000	16279000	12572000	31181000	19568000	11613000	43931	4795	41355	266443;266444;266445;266446;266447;266448;266449	357404;357405;357406;357407;357408;357409;357410;357411;357412;357413	357406	3234		10	
RTNSTFNQVVLK	1	Unmodified	1405.7678	0.76776222	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	1	By MS/MS	By MS/MS			7.8	6.31		2	4					2	2	4	6			37.485	32.945	2;3	4.4879E-07	26710	160511_QHF_FH_JSI9i_3	103.44	95.125			0.87222	0.84863	21.554	10	3	Median	1.062	0.85562	11.155	4	0	Median	0.61554	0.72778	25.606	6	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	450990000	261310000	189680000	159060000	90600000	68456000	291930000	170710000	121220000	0	0	0	0	0	0	43932	2250	41356	266450;266451;266452;266453;266454;266455;266456;266457;266458;266459	357414;357415;357416;357417;357418;357419;357420;357421;357422;357423;357424	357418			11	
RTPESTQIGQYGNGLK	1	Unmodified	1747.8853	0.88531118	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				33.875	32.444	3	0.0018766	26414	160511_QHF_FH_JSI9i_3	46.89	39.999			1.0759	0.87283	NaN	1	0	Median	1.0759	0.87283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26132000	10987000	15145000	26132000	10987000	15145000	0	0	0	0	0	0	0	0	0	43933	5753	41357	266460	357425;357426	357425			2	
RTPNNVVSTPAPSPDASQLASSLSSQK	1	Unmodified	2738.3835	0.38350006	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.2	0.748	1	2	2							2	2	1		61.703	60.49	3	4.6184E-21	49535	160511_QHF_FH_JSI9i_3	119.85	117.28			0.89764	0.82254	13.396	4	0	Median	0.95403	0.78839	6.3501	2	0	Median	0.75714	0.91971	16.144	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	336610000	176750000	159860000	211980000	110400000	101580000	124630000	66350000	58277000	0	0	0	0	0	0	43934	3799	41358	266461;266462;266463;266464;266465	357427;357428;357429;357430;357431;357432;357433;357434;357435;357436;357437;357438	357432			12	
RTPTEWIQDFK	1	Unmodified	1419.7147	0.71466402	2937	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				61.541	60.025	3	0.016101	49297	160511_QHF_FH_JSI9i_3	35.204	29.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43935	2937	41359	266466	357439	357439			1	
RTQIVYSDDVYK	1	Unmodified	1485.7464	0.74635808	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		33.671	32.724	2;3	0.00027362	28385	160511_QHF_FH_JSI11i_3	76.143	58.912			0.9146	0.95344	40.843	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1754	1.3673	1.9919	2	1	Median	0.71326	0.67426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98505000	41522000	56983000	0	0	0	75686000	28329000	47357000	22819000	13193000	9625700	0	0	0	43936	1142	41360	266467;266468;266469	357440;357441;357442;357443	357440			4	
RTSMETALALEK	1	Unmodified	1348.7021	0.70205043	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.591	38.591	2	0.00065368	33863	160511_QHF_FH_JSI11i_3	89.548	53.604			1.4652	1.371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4652	1.371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35652000	14555000	21097000	0	0	0	0	0	0	35652000	14555000	21097000	0	0	0	43937	3648	41361	266470	357444	357444			1	
RTSPLDLK	1	Unmodified	928.53418	0.53418046	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	21.405	20.787	2	0.031677	17414	160511_QHF_FH_JSI11i_3	47.657	9.3352			1.144	0.84519	24.269	4	0	Linear	0.90236	0.7216	NaN	1	0	Median	0.88382	1.0727	NaN	1	0	Median	1.0676	0.98996	NaN	1	0	Median	0.61351	0.64862	NaN	1	0	Median	372380000	205860000	166520000	93379000	43346000	50033000	79848000	45592000	34256000	140620000	81073000	59547000	58537000	35849000	22688000	43938	2947	41362	266471;266472;266473;266474	357445	357445			1	
RTTDVMFGGK	1	Unmodified	1110.5492	0.5491786	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	2	1	22.292	21.569	2;3	2.3501E-05	17435	160511_QHF_FH_JSI9i_3	98.033	71.431			1.0022	0.92207	22.714	7	0	Median	0.92524	0.74158	11.864	2	0	Median	1.0389	1.1986	3.4639	2	0	Median	1.0561	0.99544	10.828	2	0	Median	0.7799	0.75756	NaN	1	0	Median	1034300000	529530000	504820000	303520000	144330000	159190000	294720000	166490000	128230000	391070000	190980000	200090000	45027000	27723000	17304000	43939	389	41363	266475;266476;266477;266478;266479;266480;266481;266482	357446;357447;357448;357449;357450;357451;357452;357453;357454;357455;357456;357457	357455			12	
RTTDVMFGGK	1	Oxidation (M)	1126.5441	0.54409322	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				22.861	21.563	3	0.0029495	17393	160511_QHF_FH_JSI9i_3	49.35	34.684			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43940	389	41363	266483	357458	357458		159	1	
RTTSDYFLLQVLLK	1	Unmodified	1695.956	0.95595693	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			90.821	84.081	2;3	5.7472E-08	46186	160513_QHF_FH_JSI9Kac_6	96.591	89.71			0.79502	0.86592	12.009	3	0	Plateau	0.8765	0.75199	NaN	1	0	Median	0.72396	0.86592	12.481	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	374540000	207730000	166810000	70242000	37791000	32451000	304300000	169940000	134360000	0	0	0	0	0	0	43941	5233	41364	266484;266485;266486	357459;357460;357461;357462;357463;357464	357460			6	
RTVDLSSHLAK	1	Unmodified	1225.6779	0.67788459	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	4	1		22.265	21.181	2;3;4	2.6857E-06	17310	160511_QHF_FH_JSI10i_3	105.03	98.738			0.91374	0.84918	28.453	7	0	Median	1.0257	0.83855	17.271	3	0	Plateau	0.67397	0.76655	35.647	3	0	Median	0.91374	0.84918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1054200000	587300000	466900000	601250000	283060000	318180000	295940000	208990000	86945000	157020000	95244000	61774000	0	0	0	43942	816	41365	266487;266488;266489;266490;266491;266492;266493;266494	357465;357466;357467;357468;357469;357470;357471;357472;357473;357474	357466			9	
RTVENIK	1	Unmodified	858.49232	0.49231565	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		6.7828	6.4616	2	0.026735	4355	160511_QHF_FH_JSI10i_3	54.157	6.3086			0.80481	0.86433	3.9993	3	0	Plateau	1.0068	0.86737	NaN	1	0	Median	0.76125	0.86433	NaN	1	0	Median	0.85127	0.80796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	262250000	137590000	124650000	44894000	21013000	23881000	108760000	58521000	50238000	108600000	58061000	50535000	0	0	0	43943	2517	41366	266495;266496;266497	357475;357476;357477;357478	357477			4	
RTVETEAVQMLK	1	Unmodified	1403.7442	0.74424959	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	3	3	42.604	42.086	2;3	1.5686E-07	37041	160511_QHF_FH_JSI11i_3	134.75	94.318			0.95522	0.89078	41.969	10	2	Median	1.0012	0.8547	6.0292	2	0	Median	0.67444	0.82834	15.447	2	0	Median	1.1352	1.046	27.232	3	0	Plateau	1.7376	1.8435	68.576	3	2	Median	810900000	374640000	436260000	107250000	46870000	60378000	131940000	79387000	52549000	296790000	136110000	160680000	274930000	112270000	162660000	43944	2570	41367	266498;266499;266500;266501;266502;266503;266504;266505;266506;266507	357479;357480;357481;357482;357483;357484;357485;357486;357487;357488;357489;357490;357491;357492;357493	357481			15	
RTVLEGSTASTSPADHSALPNQSLTVR	0	Unmodified	2794.4209	0.4209482	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				49.825	48.22	3;4	1.0669E-12	39581	160511_QHF_FH_JSI9i_3	85	78.566			1.092	0.90748	16.292	2	2	Median	1.092	0.90748	16.292	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56081000	32030000	24051000	56081000	32030000	24051000	0	0	0	0	0	0	0	0	0	43945	3653	41368	266508;266509	357494;357495	357495			2	
RTVYVYLEK	1	Unmodified	1169.6445	0.64445919	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	44.066	34.836	3	0.00071173	19232	160513_QHF_FH_JSI10Kac_6	65.5	57.855			0.93889	1.0586	38.378	4	1	Median	1.3326	1.1337	NaN	1	0	Median	0.85942	1.0145	NaN	1	0	Median	0.51843	0.50567	NaN	1	1	Median	1.0257	1.1047	NaN	1	0	Median	75395000	39644000	35750000	18238000	9164100	9073500	44852000	22750000	22102000	5753900	3633800	2120100	6551200	4096900	2454300	43946	3521	41369	266510;266511;266512;266513	357496;357497;357498;357499;357500	357500			5	
RTYEEGLK	1	Unmodified	994.50836	0.50835964	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		6	8						2	4	5	4	3	11.214	9.8589	2;3	0.0008109	8211	160511_QHF_FH_JSI10i_2	66.692	55.323			0.97295	0.98711	16.463	16	1	Median	1.0206	0.95113	11.004	4	0	Linear	0.94433	1.0896	14.158	5	1	Median	1.1043	1.0596	6.3526	4	0	Median	0.81727	0.82684	12.972	3	0	Plateau	6282800000	3228900000	3053900000	763370000	398640000	364730000	1284000000	691130000	592860000	1942800000	874200000	1068600000	2292700000	1265000000	1027700000	43947	1386	41370	266514;266515;266516;266517;266518;266519;266520;266521;266522;266523;266524;266525;266526;266527;266528;266529	357501;357502;357503;357504;357505;357506;357507;357508;357509;357510;357511;357512;357513;357514;357515;357516;357517;357518;357519;357520;357521;357522;357523	357518			23	
RTYEEGLKHEANNPQLK	2	Acetyl (K)	2068.0338	0.03376633	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		42.308	33.2	3	0.0027902	18441	160513_QHF_FH_JSI10Kac_6	73.983	64.226			0.29113	0.31228	48.494	2	1	Median	NaN	NaN	NaN	0	0	Median	0.3742	0.44002	NaN	1	1	Median	0.2265	0.22163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17371000	10314000	7057100	0	0	0	5894400	1896800	3997600	11477000	8417600	3059500	0	0	0	43948	1386	41371	266530;266531	357524;357525;357526	357525	1337;1338		3	
RTYEQMEFPLLK	1	Unmodified	1553.7912	0.79119978	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	66.991	66.843	3	0.0024722	59593	160511_QHF_FH_JSI11i_3	36.107	30.614			1.2519	1.2316	12.14	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2229	1.1303	NaN	1	0	Median	1.2816	1.342	NaN	1	0	Median	145950000	60558000	85397000	0	0	0	0	0	0	87944000	42854000	45090000	58011000	17704000	40306000	43949	4679	41372	266532;266533	357527	357527			1	
RVAGGPQMIQLSLDGK	1	Unmodified	1668.8981	0.89812447	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			61.975	60.458	3	0.00018594	49698	160511_QHF_FH_JSI9i_3	62.861	51.806			0.42026	0.4138	20.388	2	0	Median	0.57541	0.47797	NaN	1	0	Median	0.30695	0.35824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35952000	25654000	10298000	16449000	9510600	6938500	19503000	16144000	3359500	0	0	0	0	0	0	43950	2374	41373	266534;266535	357528	357528			1	
RVAIDNTNPDAASR	0	Unmodified	1498.7488	0.7488177	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.684	17.556	3	0.058609	14266	160511_QHF_FH_JSI10i_3	18.096	8.3079			0.70292	0.80746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70292	0.80746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33583000	22565000	11018000	0	0	0	33583000	22565000	11018000	0	0	0	0	0	0	43951	4257	41374	266536	357529	357529			1	
RVAIFIEK	1	Unmodified	974.5913	0.59130141	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			48.358	39.746	3	0.0056092	21950	160513_QHF_FH_JSI10Kac_6	50.04	3.6145			1.308	1.5639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.308	1.5639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19702000	9558100	10144000	0	0	0	19702000	9558100	10144000	0	0	0	0	0	0	43952	5200	41375	266537	357530;357531	357530			2	
RVAQDWLK	1	Unmodified	1014.5611	0.56106391	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		29.835	28.924	3	0.044624	23765	160511_QHF_FH_JSI9i_3	19.362	8.5541			0.8155	0.9019	12.404	3	0	Median	1.1051	0.9019	NaN	1	0	Median	0.8155	0.9463	NaN	1	0	Median	0.78814	0.74827	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134740000	71600000	63136000	55722000	28299000	27423000	37247000	18047000	19200000	41767000	25253000	16513000	0	0	0	43953	2780	41376	266538;266539;266540	357532	357532			1	
RVATPVDWK	1	Unmodified	1070.5873	0.58727866	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.11	6.3		2	4						3	2	3	3	1	35.722	32.299	2;3	0.0024477	27985	160511_QHF_FH_JSI11i_3	50.353	46.782			0.33588	0.32285	51.381	9	1	Linear	0.81777	0.70268	21.04	2	0	Median	0.49623	0.57062	34.266	3	1	Plateau	0.28046	0.26118	65.948	3	0	Median	0.71809	0.73668	NaN	1	0	Median	2838800000	1852100000	986720000	70692000	40283000	30409000	1045000000	590780000	454200000	1419200000	1042500000	376650000	303990000	178520000	125470000	43954	1333	41377	266541;266542;266543;266544;266545;266546;266547;266548;266549	357533;357534;357535;357536;357537;357538;357539	357534			7	
RVCEEIAIIPSK	1	Unmodified	1413.765	0.76498503	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1		3	2	1	49.298	47.312	2;3	1.0259E-22	41653	160511_QHF_FH_JSI11i_3	174.24	150.21			0.8964	0.91689	18.972	6	3	Median	NaN	NaN	NaN	0	0	Median	0.84038	0.96095	20.065	3	3	Median	0.8964	0.8503	4.0235	2	0	Median	1.2045	1.2369	NaN	1	0	Median	1929800000	1016100000	913680000	0	0	0	498110000	258840000	239270000	1231500000	662530000	569000000	200160000	94756000	105410000	43955	914	41378	266550;266551;266552;266553;266554;266555	357540;357541;357542;357543;357544;357545;357546;357547;357548	357543			9	
RVDALNDEIR	0	Unmodified	1199.6258	0.62584901	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1			By MS/MS		2.5	0.5		1	1									2		27.127	27.127	2	0.014394	22963	160511_QHF_FH_JSI11i_2	51.927	19.607			0.37208	0.35365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37208	0.35365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126330000	85438000	40894000	0	0	0	0	0	0	126330000	85438000	40894000	0	0	0	43956	5479	41379	266556;266557	357549;357550	357550			2	
RVDATAGWSAAGK	1	Unmodified	1288.6524	0.65239812	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			27.377	26.068	2;3	0.0085358	21491	160511_QHF_FH_JSI10i_3	46.318	37.805			0.81317	0.94571	4.1216	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81317	0.94571	4.1216	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50892000	26582000	24310000	0	0	0	50892000	26582000	24310000	0	0	0	0	0	0	43957	2297	41380	266558;266559;266560	357551;357552;357553	357552			3	
RVDFSKVPK	2	Acetyl (K)	1116.6291	0.62914348	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	1	2	2	3	47.261	37.055	3	0.011328	19106	160513_QHF_FH_JSI10Kac_5	58.37	44.6			0.93626	1.0565	12.08	8	0	Median	1.2629	1.0662	NaN	1	0	Median	0.9119	1.0872	2.3361	2	0	Median	1.0848	1.082	16.111	2	0	Median	0.76784	0.81756	12.359	3	0	Plateau	90870000	38575000	52295000	14460000	4945200	9514700	15571000	7374200	8197300	9304400	4183300	5121100	51534000	22072000	29462000	43958	1249	41381	266561;266562;266563;266564;266565;266566;266567;266568	357554;357555;357556;357557;357558;357559;357560;357561;357562	357561	1148		9	
RVDHCPIK	1	Unmodified	1023.5284	0.52838358	1285	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		7.0374	6.6796	3	0.017546	4740	160511_QHF_FH_JSI10i_3	28.209	20.988			0.56946	0.6136	22.896	3	0	Median	1.0052	0.8351	NaN	1	0	Median	0.52835	0.6136	NaN	1	0	Median	0.56946	0.53386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	249720000	141530000	108180000	71974000	32308000	39666000	58048000	37933000	20115000	119690000	71289000	48404000	0	0	0	43959	1285	41382	266569;266570;266571	357563	357563			1	
RVDIDEFDENK	1	Unmodified	1378.6365	0.63647328	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		39.558	39.558	2	0.0034889	34783	160511_QHF_FH_JSI11i_3	64.439	35.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43960	4338	41383	266572	357564	357564			1	
RVDIIPGFEFDR	0	Unmodified	1462.7569	0.75686319	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							4	4	4	1	78.898	78.255	2;3	2.6953E-05	69997	160511_QHF_FH_JSI11i_3	69.229	60.716			0.86222	0.96116	12.922	8	3	Median	1.2841	1.0739	5.0102	2	0	Median	0.74624	0.92797	11.686	3	2	Median	0.95284	0.91034	13.152	2	1	Median	0.78904	0.79524	NaN	1	0	Median	595130000	310240000	284880000	61755000	24079000	37676000	136520000	80516000	56007000	317430000	163960000	153470000	79422000	41693000	37730000	43961	4715	41384	266573;266574;266575;266576;266577;266578;266579;266580;266581;266582;266583;266584;266585	357565;357566;357567;357568;357569;357570;357571;357572;357573;357574;357575;357576;357577;357578;357579;357580;357581;357582	357567			18	
RVDIQNK	1	Unmodified	871.48756	0.48756462	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	7.3449	7.1009	2	0.018116	5065	160511_QHF_FH_JSI10i_3	60.895	26.071			1.1681	1.1355	19.588	4	1	Median	1.276	1.0272	NaN	1	0	Median	1.0693	1.2551	NaN	1	0	Median	0.9061	0.87524	NaN	1	0	Median	1.3233	1.3473	NaN	1	1	Median	544260000	289960000	254300000	124750000	59957000	64791000	208880000	121040000	87847000	173850000	91489000	82357000	36782000	17481000	19302000	43962	2152	41385	266586;266587;266588;266589	357583;357584;357585;357586;357587;357588	357586			6	
RVEAAQETVADYQQTIK	1	Unmodified	1948.9854	0.98541915	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	42.488	42.041	2;3	8.8324E-31	37001	160511_QHF_FH_JSI11i_3	158.98	141.28			0.80974	0.7511	6.705	5	1	Median	0.85941	0.7432	NaN	1	0	Median	0.70816	0.86348	NaN	1	0	Median	0.84086	0.77948	5.2445	2	0	Median	0.70971	0.74154	NaN	1	1	Median	331250000	181630000	149610000	58514000	32920000	25594000	84183000	48954000	35230000	130590000	67695000	62896000	57958000	32064000	25893000	43963	2516	41386	266590;266591;266592;266593;266594;266595	357589;357590;357591;357592;357593;357594;357595	357589			6	
RVEAAQETVADYQQTIKK	2	Unmodified	2077.0804	0.080382171	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			39.203	37.712	3	0.0036004	31438	160511_QHF_FH_JSI10i_3	54.964	45.681			0.49092	0.56953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49092	0.56953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12529000	10512000	2016100	0	0	0	12529000	10512000	2016100	0	0	0	0	0	0	43964	2516	41387	266596	357596	357596			1	
RVEDEVNSGVGQDGSLLSSPFLK	1	Unmodified	2432.2183	0.21833222	89	L0R6Q1	SLC35A4		yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	78.072	77.506	3	5.8375E-26	67241	160511_QHF_FH_JSI12i_3	176.88	168.06			0.79274	0.86049	32.82	8	7	Median	1.2242	1.0548	NaN	1	1	Median	0.67389	0.8314	14.275	2	2	Median	0.65312	0.62774	42.44	2	1	Median	0.84387	0.87374	41.534	3	3	Median	729750000	417400000	312360000	59045000	27370000	31675000	153090000	98608000	54480000	223860000	136130000	87727000	293760000	155290000	138470000	43965	89	41388	266597;266598;266599;266600;266601;266602;266603;266604	357597;357598;357599;357600;357601;357602;357603;357604;357605;357606;357607;357608	357608			12	
RVEDVLGK	1	Unmodified	914.51853	0.5185304	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	19.986	19.59	2;3	0.0049911	15876	160511_QHF_FH_JSI12i_3	85.731	42.484			0.6579	0.61447	79.606	8	6	Median	0.63874	0.56217	NaN	1	1	Median	0.30519	0.37163	NaN	1	1	Median	1.4706	1.5067	108.73	3	2	Median	0.40914	0.40956	71.414	3	2	Plateau	670460000	383900000	286560000	31188000	17138000	14050000	90156000	57965000	32191000	204410000	101700000	102710000	344710000	207090000	137620000	43966	2517	41389	266605;266606;266607;266608;266609;266610;266611;266612	357609;357610;357611;357612;357613;357614;357615	357614			7	
RVEEAILEK	1	Unmodified	1085.6081	0.60807369	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.98	23.955	2	0.0052807	19820	160511_QHF_FH_JSI12i_3	61.65	14.452			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43967	3990	41390	266613	357616	357616			1	
RVEEDIQQQK	1	Unmodified	1271.647	0.64697839	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.68	4	8	3							2	3	5	5	10.145	9.8404	2;3	3.4256E-15	7166	160511_QHF_FH_JSI12i_3	168.74	119.94			0.94105	1.0059	21.032	14	0	Median	1.331	1.141	10.524	2	0	Median	0.78322	0.95861	7.7059	2	0	Median	0.98647	0.94302	31.163	5	0	Median	0.93305	0.99952	15.985	5	0	Median	1263100000	646890000	616240000	190390000	88857000	101540000	226560000	120140000	106420000	391120000	185190000	205930000	455050000	252700000	202350000	43968	1085	41391	266614;266615;266616;266617;266618;266619;266620;266621;266622;266623;266624;266625;266626;266627;266628	357617;357618;357619;357620;357621;357622;357623;357624;357625;357626;357627;357628;357629;357630;357631;357632;357633;357634;357635;357636	357635			19	
RVEEELEK	1	Unmodified	1030.5295	0.52948901	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	11.216	10.983	2	0.0015237	8677	160511_QHF_FH_JSI11i_3	90.15	14.772			1.0897	1.0216	16.895	2	1	Median	1.3115	1.1512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90541	0.90654	NaN	1	0	Median	154870000	72689000	82186000	30433000	12351000	18082000	0	0	0	0	0	0	124440000	60338000	64104000	43969	5065	41392	266629;266630;266631	357637;357638;357639	357637			3	
RVEELVAK	1	Unmodified	942.54983	0.54983053	5065	Q9NWB6	ARGLU1	Arginine and glutamate-rich protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	15.66	15.634	2	0.0032661	12274	160511_QHF_FH_JSI12i_3	98.033	37.443			1.4918	1.3882	128.81	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4918	1.3882	121.51	2	2	Median	1.8379	1.8328	185.05	2	2	Median	456440000	163520000	292920000	0	0	0	0	0	0	180220000	86147000	94072000	276220000	77371000	198850000	43970	5065	41393	266632;266633;266634;266635;266636	357640;357641;357642;357643;357644	357644			5	
RVEGPGSLGLEESGSR	0	Unmodified	1628.8118	0.81181188	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			35.116	33.696	3	0.0017743	28140	160511_QHF_FH_JSI10i_3	41.323	29.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43971	2333	41394	266637	357645	357645			1	
RVEIMEEESEQ	0	Unmodified	1377.6082	0.60820962	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							1	3	4	3	31.531	31.033	2	5.6666E-23	26185	160511_QHF_FH_JSI12i_3	170.47	159.32			1.0659	1.0312	55.84	11	5	Median	1.2244	1.0401	NaN	1	0	Median	0.78693	0.95335	55.707	3	2	Median	1.1519	1.1095	56.792	4	2	Median	0.85716	0.85477	48.107	3	1	Plateau	1564900000	721760000	843150000	199080000	91627000	107450000	436090000	189090000	247000000	574720000	244060000	330660000	355020000	196980000	158040000	43972	1824	41395	266638;266639;266640;266641;266642;266643;266644;266645;266646;266647;266648	357646;357647;357648;357649;357650;357651;357652;357653;357654;357655;357656;357657;357658;357659;357660;357661;357662	357662			17	
RVEIMEEESEQ	0	Oxidation (M)	1393.6031	0.60312424	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	1	1			By MS/MS	By MS/MS	2.75	0.433		1	3									1	3	32.033	30.717	2	0.00010011	26782	160511_QHF_FH_JSI11i_3	99.53	87.683			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10654000	0	10654000	0	0	0	0	0	0	0	0	0	10654000	0	10654000	43973	1824	41395	266649;266650;266651;266652	357663;357664;357665;357666	357663		1508	4	
RVEIQMPK	1	Oxidation (M)	1015.5485	0.54845032	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		31	30.31	3	0.0090558	26105	160511_QHF_FH_JSI11i_3	48.283	33.617			1.2601	1.316	49.733	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78665	0.9258	NaN	1	1	Median	2.0185	1.8705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32500000	12601000	19899000	0	0	0	17405000	8106600	9298200	15095000	4494500	10601000	0	0	0	43974	5298	41396	266653;266654	357667;357668	357667		2626	2	
RVEIQMPK	1	Unmodified	999.55354	0.55353569	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	1	3		31.098	30.402	2;3	0.001991	25361	160511_QHF_FH_JSI10i_3	51.066	46.126			1.1165	1.0827	16.252	4	2	Median	1.0192	0.82972	NaN	1	0	Median	0.86937	1.0327	NaN	1	0	Median	1.2469	1.1672	3.9424	2	2	Median	NaN	NaN	NaN	0	0	Median	358790000	167500000	191290000	56727000	22039000	34688000	93534000	46347000	47186000	208530000	99118000	109410000	0	0	0	43975	5298	41396	266655;266656;266657;266658;266659	357669;357670;357671;357672;357673;357674;357675	357672			7	
RVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSR	1	Unmodified	3853.9633	0.96325051	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				77.828	76.41	4	1.9717E-07	62901	160511_QHF_FH_JSI9i_3	48.085	44.05			1.3962	1.1502	NaN	1	0	Median	1.3962	1.1502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28718000	11120000	17598000	28718000	11120000	17598000	0	0	0	0	0	0	0	0	0	43976	5298	41397	266660	357676;357677	357677			2	
RVELSGPK	1	Unmodified	884.50797	0.50796571	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		12.883	12.332	2	0.0068546	9794	160511_QHF_FH_JSI10i_3	66.692	38.518			0.90248	0.85211	14.378	3	0	Plateau	1.407	1.1296	NaN	1	0	Median	0.90128	1.0263	NaN	1	0	Median	0.90248	0.85141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	576470000	290610000	285860000	130780000	52921000	77860000	170030000	87291000	82744000	275660000	150400000	125250000	0	0	0	43977	5298	41398	266661;266662;266663	357678;357679;357680;357681;357682;357683	357680			6	
RVENSIPAAGETQNVEVAAGPAGK	1	Unmodified	2364.2034	0.20335085	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		45.497	44.604	3	2.0255E-16	39376	160511_QHF_FH_JSI11i_3	120.64	112.8			0.87389	0.91548	5.21	4	1	Median	1.0174	0.88749	NaN	1	0	Median	0.76569	0.90344	7.7706	2	1	Median	0.9947	0.94436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	192720000	101490000	91230000	42188000	21387000	20801000	70191000	36799000	33392000	80339000	43301000	37037000	0	0	0	43978	2604	41399	266664;266665;266666;266667	357684;357685;357686;357687;357688;357689;357690;357691;357692;357693;357694	357685			11	
RVEQEIK	1	Unmodified	900.50288	0.50288033	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	6.3619	6.4107	2	0.020057	3994	160511_QHF_FH_JSI12i_3	62.546	9.8302			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43979	5461	41400	266668;266669	357695;357696	357696			2	
RVEQPLYGLDGSAAK	1	Unmodified	1602.8366	0.83657007	3324	Q86UE8	TLK2	Serine/threonine-protein kinase tousled-like 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		40.426	40.426	3	0.033318	35653	160511_QHF_FH_JSI11i_3	32.191	24.147			0.65787	0.59843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65787	0.59843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32915000	23868000	9046500	0	0	0	0	0	0	32915000	23868000	9046500	0	0	0	43980	3324	41401	266670	357697	357697			1	
RVEQTTLK	1	Unmodified	973.55564	0.55564418	5031	Q9NVG8	TBC1D13	TBC1 domain family member 13	yes	yes	0	0	0	1		By matching	By MS/MS		3	0			2								1	1		7.9368	7.6614	2	0.008204	5427	160511_QHF_FH_JSI11i_3	57.59	20.031			0.85011	0.86858	11.895	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69745	0.79851	NaN	1	0	Median	1.0362	0.9448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103320000	56252000	47066000	0	0	0	32133000	19530000	12603000	71186000	36723000	34463000	0	0	0	43981	5031	41402	266671;266672	357698	357698			1	
RVESQLK	1	Unmodified	858.49232	0.49231565	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		6	8						4	6	5	4	3	6.2789	4.2806	2;3	0.0035861	3580	160511_QHF_FH_JSI11i_3	60.895	4.9935			1.0125	0.95224	17.968	17	1	Median	1.1281	0.92148	18.823	5	1	Median	0.82545	0.98855	25.646	5	0	Median	0.97963	0.92786	11.761	4	0	Median	0.92348	1.0155	15.77	3	0	Median	14383000000	7164000000	7218600000	2774600000	1333400000	1441200000	4707100000	2402500000	2304600000	5467100000	2602200000	2864900000	1433800000	825930000	607860000	43982	773	41403	266673;266674;266675;266676;266677;266678;266679;266680;266681;266682;266683;266684;266685;266686;266687;266688;266689;266690	357699;357700;357701;357702;357703;357704;357705;357706;357707;357708;357709;357710;357711;357712;357713;357714;357715;357716;357717;357718;357719;357720;357721;357722;357723;357724;357725	357701			27	
RVEVNGEHATVR	0	Unmodified	1365.7113	0.71130998	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.384	11.587	3	0.018983	8991	160511_QHF_FH_JSI9i_3	25.982	16.932			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43983	2712	41404	266691	357726	357726			1	
RVFITDDFHDMMPK	1	Oxidation (M)	1766.812	0.81201158	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			11							4	4	3		56.137	55.011	3;4	9.9815E-05	47458	160511_QHF_FH_JSI11i_3	81.311	69.395			1.0623	0.94177	9.7831	11	0	Median	1.0768	0.87421	6.7554	4	0	Median	0.82411	0.9503	5.8331	4	0	Median	1.0739	1.0127	6.6062	3	0	Plateau	NaN	NaN	NaN	0	0	Median	723640000	359060000	364580000	240380000	108970000	131420000	245100000	129330000	115770000	238160000	120770000	117390000	0	0	0	43984	1057	41405	266692;266693;266694;266695;266696;266697;266698;266699;266700;266701;266702	357727;357728;357729;357730;357731;357732;357733;357734;357735;357736;357737;357738;357739	357729		690;691	12	
RVFITDDFHDMMPK	1	Unmodified	1750.8171	0.81709696	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.311		4	33							15	13	7	2	70.661	69.653	2;3;4	1.0028E-07	58416	160511_QHF_FH_JSI10i_3	90.367	78.927			0.89467	0.83801	25.532	33	15	Median	1.0234	0.83527	25.163	12	5	Median	0.68185	0.78811	30.455	12	6	Median	0.96092	0.91643	22.278	7	3	Median	0.81858	0.82994	4.2905	2	1	Median	2781300000	1448800000	1332600000	676530000	317110000	359420000	674950000	396460000	278490000	1273900000	648470000	625480000	155920000	86731000	69193000	43985	1057	41405	266703;266704;266705;266706;266707;266708;266709;266710;266711;266712;266713;266714;266715;266716;266717;266718;266719;266720;266721;266722;266723;266724;266725;266726;266727;266728;266729;266730;266731;266732;266733;266734;266735;266736;266737;266738;266739	357740;357741;357742;357743;357744;357745;357746;357747;357748;357749;357750;357751;357752;357753;357754;357755;357756;357757;357758;357759;357760;357761;357762;357763;357764;357765;357766;357767;357768;357769;357770;357771;357772;357773;357774;357775;357776;357777;357778;357779;357780;357781;357782;357783;357784;357785;357786;357787;357788;357789;357790;357791;357792;357793;357794;357795;357796;357797	357767			56	
RVFITDDFHDMMPK	1	2 Oxidation (M)	1782.8069	0.8069262	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	2	1	By MS/MS	By MS/MS			3	0			2							1	1			44.342	42.776	3	0.015379	34843	160511_QHF_FH_JSI9i_3	33.796	29.553			1.0105	0.98921	23.874	2	0	Median	1.4391	1.1711	NaN	1	0	Median	0.70956	0.83555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56596000	28103000	28493000	39504000	17165000	22338000	17092000	10938000	6154500	0	0	0	0	0	0	43986	1057	41405	266740;266741	357798;357799	357799		690;691	2	
RVFNPYTEFK	1	Unmodified	1299.6612	0.66117189	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			48.863	47.296	3	0.015516	39526	160511_QHF_FH_JSI10i_3	35.33	26.817			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43987	3998	41406	266742	357800	357800			1	
RVGDNDFLEVR	0	Unmodified	1318.663	0.6629628	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		42.705	42.705	3	0.020951	37649	160511_QHF_FH_JSI11i_3	22.395	10.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43988	103	41407	266743	357801	357801			1	
RVGFQYEGTYK	1	Unmodified	1346.6619	0.66190017	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	3	3	1	36.04	31.816	2;3	2.5822E-05	26644	160511_QHF_FH_JSI10i_3	68.132	51.19			0.93179	0.85684	23.265	10	1	Median	1.0478	0.867	34.334	3	0	Median	0.73126	0.84679	12.676	3	0	Median	0.71895	0.66683	24.87	3	1	Plateau	1.0403	1.1191	NaN	1	0	Median	1064300000	507240000	557090000	436230000	176630000	259590000	477060000	239400000	237660000	144940000	88368000	56567000	6103000	2838900	3264000	43989	1000	41408	266744;266745;266746;266747;266748;266749;266750;266751;266752;266753	357802;357803;357804;357805;357806;357807;357808;357809;357810;357811;357812;357813;357814;357815;357816;357817;357818;357819;357820	357807			19	
RVGGDVTSDK	1	Unmodified	1032.52	0.51998696	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		6.4713	6.2109	2	0.0075835	4068	160511_QHF_FH_JSI11i_3	51.445	25.708			0.95164	0.97734	12.969	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79355	0.8917	NaN	1	0	Median	1.1412	1.0712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81281000	39997000	41283000	0	0	0	22873000	12576000	10297000	58408000	27421000	30986000	0	0	0	43990	2610	41409	266754;266755	357821	357821			1	
RVGMADANSPPK	1	Unmodified	1241.6187	0.61865515	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				13.755	12.862	3	0.021806	10024	160511_QHF_FH_JSI9i_3	39.581	27.004			0.7432	0.61054	NaN	1	0	Median	0.7432	0.61054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31472000	15821000	15650000	31472000	15821000	15650000	0	0	0	0	0	0	0	0	0	43991	1273	41410	266756	357822	357822			0	
RVGNGEETPMIGDK	1	Unmodified	1501.7195	0.7194914	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.761	24.486	3	0.00030523	20172	160511_QHF_FH_JSI10i_3	64.675	39.145			1.1906	1.3127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.3127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29500000	14110000	15390000	0	0	0	29500000	14110000	15390000	0	0	0	0	0	0	43992	2419	41411	266757	357823	357823			1	
RVGVPSTMDLVK	1	Unmodified	1300.7173	0.71730656	4346	Q9BQ39	DDX50	ATP-dependent RNA helicase DDX50	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		50.339	49.285	3	0.0093905	40483	160511_QHF_FH_JSI9i_3	38.445	29.257			0.93162	0.91956	8.3224	3	0	Plateau	0.93162	0.77875	NaN	1	0	Median	0.71782	0.83965	NaN	1	0	Median	0.96845	0.91956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57440000	34469000	22971000	14301000	7521800	6779600	17839000	10942000	6896800	25299000	16004000	9295000	0	0	0	43993	4346	41412	266758;266759;266760	357824	357824			1	
RVGVWNVPYISNIYLIK	1	Unmodified	2033.1462	0.14621731	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			89.477	82.282	3	0.0016827	45266	160513_QHF_FH_JSI9Kac_6	53.255	43.334			1.1484	1.1631	33.379	2	0	Median	1.716	1.4727	NaN	1	0	Median	0.7685	0.91854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	159170000	86129000	73038000	33767000	13722000	20046000	125400000	72408000	52992000	0	0	0	0	0	0	43994	2194	41413	266761;266762	357825;357826;357827	357825			3	
RVGVWNVPYISQAYVIR	0	Unmodified	2019.1054	0.10541513	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				83.422	74.804	3	0.037869	40955	160513_QHF_FH_JSI9Kac_6	20.565	10.643			0.38403	0.33029	NaN	1	1	Median	0.38403	0.33029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52961000	35136000	17824000	52961000	35136000	17824000	0	0	0	0	0	0	0	0	0	43995	430	41414	266763	357828	357828			1	
RVHVTQEDFEMAVAK	1	Unmodified	1758.8723	0.87230365	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.347	48.75	3	0.00046756	39987	160511_QHF_FH_JSI9i_3	71.08	60.446			0.5121	0.42154	NaN	1	1	Median	0.5121	0.42154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18718000	14670000	4048700	18718000	14670000	4048700	0	0	0	0	0	0	0	0	0	43996	1984	41415	266764	357829	357829			1	
RVIDYAVK	1	Unmodified	962.55492	0.5549159	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							2	2	3		22.059	21.436	2;3	0.00071626	17525	160511_QHF_FH_JSI10i_3	99.442	64.634			0.85126	0.72541	96.398	7	1	Median	1.2067	0.9967	44.931	2	0	Median	0.46878	0.55509	36.643	2	0	Median	0.2448	0.23469	148.98	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1639600000	890950000	748640000	674770000	307580000	367200000	288530000	203980000	84552000	676280000	379390000	296890000	0	0	0	43997	1473	41416	266765;266766;266767;266768;266769;266770;266771	357830;357831;357832;357833;357834;357835;357836	357833			6	
RVIEGSLSPK	1	Unmodified	1084.6241	0.6240581	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.256	19.019	2	0.026091	15329	160511_QHF_FH_JSI9i_3	40.724	28.197			1.3543	1.1114	NaN	1	0	Median	1.3543	1.1114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20647000	7730800	12917000	20647000	7730800	12917000	0	0	0	0	0	0	0	0	0	43998	3436	41417	266772	357837	357837			1	
RVIGAKKDQYFLDK	3	2 Acetyl (K)	1763.957	0.95701956	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	2	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	64.533	55.445	2;3	7.9103E-11	29092	160513_QHF_FH_JSI12Kac_6	124.09	105.26			0.939	0.96464	199.83	8	3	Median	1.0842	0.92919	505.93	2	2	Median	1.7847	2.0571	119.67	2	1	Median	0.9231	0.88596	2.9765	2	0	Median	0.9784	1.0452	2.2875	2	0	Median	700820000	362040000	338780000	108810000	57436000	51376000	352880000	174520000	178360000	95026000	50449000	44577000	144100000	79630000	64472000	43999	5479	41418	266773;266774;266775;266776;266777;266778;266779;266780;266781	357838;357839;357840;357841;357842;357843;357844;357845;357846;357847;357848;357849	357845	3442;3443		12	
RVIGAKKDQYFLDKK	4	2 Acetyl (K)	1892.052	0.051982576	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	2	0	0	4		By MS/MS		By MS/MS	16	0									2		1		1	56.397	47.886	3	0.002308	26378	160513_QHF_FH_JSI10Kac_6	60.307	46.266			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7754500	7754500	0	0	0	0	7754500	7754500	0	0	0	0	0	0	0	44000	5479	41419	266782;266783	357850;357851	357851	3442;3443		2	
RVIISAPSADAPMFVMGVNHEK	1	Unmodified	2368.2032	0.20315662	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.24		4	14						9	8	11	5	3	75.304	71.784	3;4	9.777E-48	35716	160513_QHF_FH_JSI12Kac_6	178.19	166.24			0.81936	0.83052	30.746	26	7	Plateau	0.91549	0.76776	15.395	8	2	Median	0.70179	0.81601	47.403	10	4	Median	0.87174	0.81199	9.0953	5	1	Median	0.74084	0.88995	11.007	3	0	Plateau	23102000000	12637000000	10465000000	4933200000	2374200000	2559000000	14894000000	8677200000	6217100000	2585000000	1228600000	1356500000	689510000	357530000	331980000	44001	812	41420	266784;266785;266786;266787;266788;266789;266790;266791;266792;266793;266794;266795;266796;266797;266798;266799;266800;266801;266802;266803;266804;266805;266806;266807;266808;266809;266810	357852;357853;357854;357855;357856;357857;357858;357859;357860;357861;357862;357863;357864;357865;357866;357867;357868;357869;357870;357871;357872;357873;357874;357875;357876;357877;357878;357879;357880;357881;357882;357883;357884;357885;357886;357887;357888;357889;357890;357891;357892;357893;357894;357895;357896;357897;357898;357899;357900;357901;357902;357903;357904;357905;357906;357907;357908;357909;357910;357911;357912;357913;357914;357915	357908			64	
RVIISAPSADAPMFVMGVNHEK	1	Oxidation (M)	2384.1981	0.19807124	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.6		4	9						17	9	11	6	4	69.479	63.804	3;4	1.4065E-28	34769	160513_QHF_FH_JSI10Kac_6	147.26	135.48			0.94822	0.91567	15.995	29	4	Median	1.0819	0.88818	19.102	9	1	Median	0.81452	0.9498	12.463	10	0	Median	1.053	0.99935	12.757	6	3	Median	0.88087	0.9311	8.0938	4	0	Median	7534800000	3685800000	3849100000	2717900000	1306300000	1411600000	3135400000	1580500000	1554900000	933230000	411910000	521320000	748290000	387080000	361210000	44002	812	41420	266811;266812;266813;266814;266815;266816;266817;266818;266819;266820;266821;266822;266823;266824;266825;266826;266827;266828;266829;266830;266831;266832;266833;266834;266835;266836;266837;266838;266839;266840	357916;357917;357918;357919;357920;357921;357922;357923;357924;357925;357926;357927;357928;357929;357930;357931;357932;357933;357934;357935;357936;357937;357938;357939;357940;357941;357942;357943;357944;357945;357946;357947;357948;357949;357950;357951;357952;357953;357954;357955;357956;357957;357958;357959;357960;357961;357962;357963;357964;357965;357966;357967;357968;357969;357970;357971;357972;357973;357974;357975;357976	357972		332;333	61	
RVIISAPSADAPMFVMGVNHEK	1	2 Oxidation (M)	2400.193	0.19298586	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	4	4	2	2	63.64	57.048	3;4	8.1059E-29	30241	160513_QHF_FH_JSI9Kac_6	159.98	152.77			0.98846	0.97728	11.263	12	0	Median	1.1404	0.93813	15.194	4	0	Median	0.85408	0.98661	12.612	4	0	Median	1.058	1.0369	8.0307	2	0	Median	0.91049	0.96745	1.0835	2	0	Median	2859100000	1437000000	1422100000	1284900000	581350000	703560000	1128400000	616550000	511860000	117810000	56905000	60902000	327990000	182240000	145750000	44003	812	41420	266841;266842;266843;266844;266845;266846;266847;266848;266849;266850;266851;266852	357977;357978;357979;357980;357981;357982;357983;357984;357985;357986;357987;357988;357989;357990;357991;357992;357993;357994;357995;357996;357997;357998;357999;358000;358001;358002;358003;358004;358005;358006	357997		332;333	30	
RVIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K);Oxidation (M)	3146.5529	0.55289035	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	1	2			By MS/MS	By MS/MS	16	0									3			2	1	78.287	68.928	3;4	5.5886E-49	37709	160513_QHF_FH_JSI11Kac_6	170.44	164.34			0.373	0.37148	45.143	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28662	0.26996	NaN	1	0	Median	0.48542	0.51117	NaN	1	0	Median	243160000	184320000	58845000	0	0	0	0	0	0	169120000	133640000	35473000	74043000	50671000	23372000	44004	812	41421	266853;266854;266855	358007;358008;358009;358010;358011	358008	453	332;333	5	
RVIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K)	3130.558	0.55797573	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	81.159	73.177	3;4	1.5967E-84	39832	160513_QHF_FH_JSI11Kac_6	216.74	186.2			0.64942	0.6173	76.42	6	0	Median	1.0309	0.87567	NaN	1	0	Median	1.2183	1.4484	10.767	2	0	Median	0.30075	0.28335	1.0736	2	0	Median	0.4091	0.43517	NaN	1	0	Median	2634200000	1517200000	1117000000	95031000	46012000	49019000	1380500000	558040000	822450000	1025700000	810640000	215100000	132900000	102500000	30405000	44005	812	41421	266856;266857;266858;266859;266860;266861	358012;358013;358014;358015;358016;358017;358018;358019;358020	358015	453		9	
RVIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K);2 Oxidation (M)	3162.5478	0.54780497	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	2	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	75.214	66.784	4	3.6577E-29	36938	160513_QHF_FH_JSI10Kac_6	131.62	122.28			0.48616	0.54076	164.4	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4619	1.7293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.16167	0.1691	NaN	1	1	Median	205890000	162790000	43102000	0	0	0	78622000	37217000	41404000	94348000	94348000	0	32923000	31226000	1697700	44006	812	41421	266862;266863;266864	358021;358022;358023;358024	358023	453	332;333	4	
RVLALSVETDYTFPLAEK	1	Unmodified	2051.0939	0.09390697	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			8							3	2	3		87.043	86.375	2;3	3.6847E-08	76932	160511_QHF_FH_JSI11i_3	128.9	96.839			0.82334	0.83849	14.424	7	3	Median	1.0269	0.85368	2.539	2	0	Median	0.76695	0.87542	9.6827	2	1	Median	0.73373	0.68289	23.613	3	2	Plateau	NaN	NaN	NaN	0	0	Median	207120000	110460000	96662000	59014000	30145000	28869000	61018000	36419000	24599000	87086000	43892000	43194000	0	0	0	44007	837	41422	266865;266866;266867;266868;266869;266870;266871;266872	358025;358026;358027;358028;358029;358030;358031;358032;358033;358034;358035	358026			11	
RVLGLVLLR	0	Unmodified	1037.7073	0.70733422	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	1	By MS/MS	By matching	By matching		16	0									3	1	1	1		71.212	62.663	3	0.0029386	33245	160513_QHF_FH_JSI9Kac_6	51.749	11.747			1.2099	0.99713	10.536	3	0	Plateau	1.256	1.0624	NaN	1	0	Median	0.81568	0.95628	NaN	1	0	Median	1.2099	1.1806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145510000	63370000	82139000	60361000	26274000	34087000	70229000	30493000	39736000	14918000	6602900	8315100	0	0	0	44008	1059	41423	266873;266874;266875	358036	358036			1	
RVLIAAHGNSLR	0	Unmodified	1305.763	0.76295162	1144	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	0	1	By MS/MS				16	0									1	1				31.265	22.518	4	0.0047673	12510	160513_QHF_FH_JSI9Kac_6	34.685	27.314			1.3583	1.1748	NaN	1	0	Median	1.3583	1.1748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10738000	4812700	5925700	10738000	4812700	5925700	0	0	0	0	0	0	0	0	0	44009	1144	41424	266876	358037;358038	358037			2	
RVLLGETGK	1	Unmodified	971.57638	0.57637963	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		17.11	16.285	2;3	0.00015147	12917	160511_QHF_FH_JSI9i_3	77.192	57.877			0.83015	0.80739	11.693	4	0	Linear	1.026	0.81754	2.6892	2	0	Median	0.61696	0.72157	NaN	1	0	Median	0.68753	0.64227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1228700000	639010000	589720000	875610000	442360000	433250000	286200000	159320000	126880000	66923000	37326000	29596000	0	0	0	44010	1996	41425	266877;266878;266879;266880	358039;358040;358041;358042	358042			4	
RVLLQASQDENFGNTTPR	0	Unmodified	2045.029	0.029015303	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				45.092	43.492	3	0.0020622	35579	160511_QHF_FH_JSI9i_3	49.537	39.48			0.88974	0.76149	NaN	1	1	Median	0.88974	0.76149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8715800	3412200	5303500	8715800	3412200	5303500	0	0	0	0	0	0	0	0	0	44011	1895	41426	266881	358043	358043			1	
RVLQALEGLK	1	Unmodified	1125.687	0.68699271	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		45.187	44.007	2;3	0.00039492	36901	160511_QHF_FH_JSI10i_3	64.73	45.984			1.0529	1.0165	33.281	4	3	Median	1.2771	1.046	NaN	1	1	Median	0.84434	0.95272	5.1212	2	1	Median	2.022	1.8961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	516150000	266200000	249950000	89201000	46931000	42270000	293290000	173000000	120280000	133660000	46263000	87397000	0	0	0	44012	1483	41427	266882;266883;266884;266885;266886	358044;358045;358046;358047;358048;358049	358046			6	
RVLVDVER	0	Unmodified	984.57163	0.5716286	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				24.222	22.902	2	0.033513	18506	160511_QHF_FH_JSI9i_3	41.029	6.2213			0.91331	0.76621	NaN	1	0	Median	0.91331	0.76621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15477000	8570700	6906200	15477000	8570700	6906200	0	0	0	0	0	0	0	0	0	44013	910	41428	266887	358050	358050			1	
RVNDEEGIK	1	Unmodified	1058.5356	0.53563702	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		7.6999	7.6999	2	0.0030168	5415	160511_QHF_FH_JSI11i_3	70.056	26.973			2.0714	1.9641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0714	1.9641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24672000	6633600	18038000	0	0	0	0	0	0	24672000	6633600	18038000	0	0	0	44014	3063	41429	266888;266889;266890	358051;358052;358053	358052			3	
RVNEVIVGNDQLMEI	0	Unmodified	1727.8876	0.88761936	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	77.809	77.24	2	0.00014664	67080	160511_QHF_FH_JSI12i_3	95.401	71.55			1.1107	1.0452	7.4957	5	0	Median	1.1668	0.98153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1368	1.0896	5.8817	2	0	Median	1.0001	1.0259	10.473	2	0	Median	155310000	78843000	76464000	26706000	13455000	13251000	0	0	0	62164000	31509000	30655000	66437000	33879000	32558000	44015	4946	41430	266891;266892;266893;266894;266895	358054;358055;358056;358057;358058;358059;358060	358060			7	
RVNSASSSNPPAEVDPDTILK	1	Unmodified	2196.1022	0.10223983	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			54.012	52.737	3	5.8367E-07	46542	160511_QHF_FH_JSI10i_2	69.779	54.85			0.84794	0.85063	11.343	4	0	Median	1.0763	0.88628	17.12	2	0	Median	0.72929	0.85063	8.7203	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283740000	152740000	131000000	159330000	77719000	81613000	124400000	75020000	49384000	0	0	0	0	0	0	44016	4538	41431	266896;266897;266898;266899	358061;358062;358063;358064;358065;358066;358067	358067			7	
RVPFSLLR	0	Unmodified	986.60253	0.6025348	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			62.052	53.364	3	0.011472	28493	160513_QHF_FH_JSI9Kac_6	41.876	26.725			1.3154	1.3252	77.952	2	1	Median	0.8925	0.76368	NaN	1	0	Median	1.9388	2.2997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8428900	3266100	5162800	4775900	1941800	2834100	3653000	1324300	2328700	0	0	0	0	0	0	44017	814	41432	266900;266901	358068;358069	358068			2	
RVPSNASWEQAMK	1	Unmodified	1502.73	0.72999651	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			38.792	37.309	3	0.0028358	30392	160511_QHF_FH_JSI9i_3	46.797	41.077			0.75516	0.74497	22.596	2	0	Median	0.76799	0.63496	NaN	1	0	Median	0.74254	0.87403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37518000	20997000	16522000	21157000	11538000	9619100	16361000	9458900	6902400	0	0	0	0	0	0	44018	521	41433	266902;266903	358070	358070			1	
RVPYNYLQR	0	Unmodified	1207.6462	0.64619053	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			44.206	35.591	3	0.051848	19690	160513_QHF_FH_JSI10Kac_6	14.118	1.0268			0.36006	0.42931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36006	0.42931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8521100	6593200	1927900	0	0	0	8521100	6593200	1927900	0	0	0	0	0	0	44019	3407	41434	266904	358071	358071			1	
RVQDLEQK	1	Unmodified	1014.5458	0.54580778	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		8.9064	8.9064	2;3	0.032613	6560	160511_QHF_FH_JSI11i_3	58.433	22.815			1.657	1.5233	77.837	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.657	1.5233	77.837	2	2	Median	NaN	NaN	NaN	0	0	Median	206140000	82932000	123210000	0	0	0	0	0	0	206140000	82932000	123210000	0	0	0	44020	1500	41435	266905;266906	358072;358073	358072			2	
RVQDLSAGGQGSLTDSGPER	0	Unmodified	2028.9825	0.98245904	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			33.323	32.101	3	1.7072E-08	26757	160511_QHF_FH_JSI10i_3	100.28	83.204			0.81815	0.81641	2.3965	2	0	Median	0.95264	0.83037	NaN	1	0	Median	0.70264	0.8027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79362000	38910000	40452000	31578000	13117000	18460000	47784000	25792000	21992000	0	0	0	0	0	0	44021	1493	41436	266907;266908;266909;266910	358074;358075;358076;358077;358078	358075			5	
RVQGAVTPLLASMISFIDR	0	Unmodified	2073.1405	0.14048001	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	86.354	85.914	3	0.039659	71957	160511_QHF_FH_JSI10i_3	22.653	7.4982			0.85815	0.82883	13.866	6	0	Median	1.4299	1.1433	NaN	1	0	Median	0.85331	0.98177	NaN	1	0	Median	0.86302	0.81888	0	2	0	Median	0.80769	0.82883	0	2	0	Median	3922700000	2088700000	1834000000	149990000	61955000	88032000	550490000	328330000	222150000	2651200000	1348900000	1302300000	571080000	349560000	221520000	44022	3009	41437	266911;266912;266913;266914;266915;266916	358079;358080;358081	358080			3	
RVQQSSGPA	0	Unmodified	928.47264	0.47264284	1978	P62072	TIMM10	Mitochondrial import inner membrane translocase subunit Tim10	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.8	5.63		1						3			1	1	2	5.3083	-1.1864	2	0.00030174	2569	160511_QHF_FH_JSI12i_2	83.364	67.07			0.93295	1.0248	6.6841	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93262	0.91537	NaN	1	0	Median	0.93879	1.0276	0.38338	2	0	Median	71646000	38941000	32705000	0	0	0	0	0	0	10121000	5343000	4778300	61525000	33598000	27927000	44023	1978	41438	266917;266918;266919;266920	358082;358083;358084	358082			3	
RVQVDVK	1	Unmodified	842.4974	0.49740102	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.8	0.4		1	4							2	1	1	1	11.066	10.703	3	0.0066724	8253	160511_QHF_FH_JSI9i_3	50.127	20.978			1.0787	1.0202	20.027	5	0	Median	1.4022	1.1619	18.396	2	0	Median	0.81717	0.93706	NaN	1	0	Median	1.0787	1.0447	NaN	1	0	Median	0.75751	0.75986	NaN	1	0	Median	1939700000	995090000	944610000	831290000	386410000	444870000	516970000	308070000	208900000	485600000	235340000	250260000	105850000	65277000	40569000	44024	2380	41439	266921;266922;266923;266924;266925	358085;358086;358087;358088;358089;358090;358091	358090			7	
RVSEMPAAK	1	Unmodified	987.51715	0.51715019	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.716	10.005	2	0.0023541	7530	160511_QHF_FH_JSI9i_3	65.224	34.97			1.2575	1.0352	NaN	1	0	Median	1.2575	1.0352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67672000	32713000	34959000	67672000	32713000	34959000	0	0	0	0	0	0	0	0	0	44025	1432	41440	266926	358092;358093	358093			2	
RVSEQFTAMFR	0	Unmodified	1370.6765	0.67650438	2824	Q3ZCM7	TUBB8	Tubulin beta-8 chain	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			66.437	58.41	3	0.015141	32037	160513_QHF_FH_JSI10Kac_6	34.96	12.486			0.24476	0.28274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.24476	0.28274	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56819000	49542000	7276900	0	0	0	56819000	49542000	7276900	0	0	0	0	0	0	44026	2824	41441	266927	358094	358094			1	
RVSISEGDDK	1	Unmodified	1104.5411	0.54111633	1203	P22087	FBL	rRNA 2'-O-methyltransferase fibrillarin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		10.786	10.375	2;3	0.0025545	8037	160511_QHF_FH_JSI11i_3	59.426	38.054			1.2436	1.1517	15.365	5	0	Median	1.2844	1.0706	23.908	2	0	Median	0.79614	0.91603	NaN	1	0	Median	1.2584	1.16	1.012	2	0	Median	NaN	NaN	NaN	0	0	Median	196520000	89440000	107080000	47119000	17689000	29430000	51372000	30237000	21135000	98025000	41514000	56511000	0	0	0	44027	1203	41442	266928;266929;266930;266931;266932	358095;358096	358095			2	
RVSLEPHQGPGTPESK	1	Unmodified	1717.8747	0.87474649	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				19.978	18.776	3	7.3214E-05	15018	160511_QHF_FH_JSI9i_3	70.96	59.269			1.1171	0.92204	NaN	1	0	Median	1.1171	0.92204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70812000	28587000	42225000	70812000	28587000	42225000	0	0	0	0	0	0	0	0	0	44028	2587	41443	266933	358097	358097			1	
RVVAEPVELAQEFR	0	Unmodified	1641.8839	0.88385462	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							3	3	1		65.085	63.832	2;3	1.067E-10	53494	160511_QHF_FH_JSI10i_3	151.3	142.01			0.82661	0.95125	38.401	5	0	Median	1.9639	1.6652	37.547	2	0	Median	0.80085	0.93113	6.2623	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295890000	148120000	147760000	91692000	32483000	59210000	204190000	115640000	88553000	0	0	0	0	0	0	44029	534	41444	266934;266935;266936;266937;266938;266939;266940	358098;358099;358100;358101;358102;358103;358104;358105	358101			8	
RVVALSMSPVDDTFISGSLDK	1	Oxidation (M)	2252.1358	0.13584814	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				76.408	74.969	3	0.0010991	61707	160511_QHF_FH_JSI9i_3	47.808	36.508			0.39922	0.33822	NaN	1	1	Median	0.39922	0.33822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10274000	8961000	1313200	10274000	8961000	1313200	0	0	0	0	0	0	0	0	0	44030	3159	41445	266941	358106	358106		2208	1	
RVVDESDETENQEEK	1	Unmodified	1805.7915	0.79152995	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By matching	1	0	2											1	1	10.461	10.206	3	0.0044888	7878	160511_QHF_FH_JSI11i_1	71.316	61.785			0.95944	0.97788	3.0975	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0169	0.99953	NaN	1	0	Median	0.90526	0.95669	NaN	1	0	Median	80565000	43383000	37182000	0	0	0	0	0	0	41434000	21034000	20399000	39132000	22349000	16783000	44031	560	41446	266942;266943	358107	358107			0	
RVVELENEK	1	Unmodified	1114.5982	0.59823728	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.42	14.42	2	0.0058043	11686	160511_QHF_FH_JSI11i_3	63.076	25.348			0.87973	0.83423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87973	0.83423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42865000	19080000	23784000	0	0	0	0	0	0	42865000	19080000	23784000	0	0	0	44032	2574	41447	266944	358108	358108			1	
RVVGVLLGSWQK	1	Unmodified	1340.7929	0.79285476	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	68.506	59.723	3	1.2403E-06	31700	160513_QHF_FH_JSI9Kac_6	93.623	72.835			1.002	0.91554	10.357	3	0	Plateau	1.0742	0.93801	NaN	1	0	Median	0.76737	0.91554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.002	1.1074	NaN	1	0	Median	121830000	71612000	50215000	37089000	22926000	14163000	75062000	42602000	32460000	0	0	0	9676200	6083800	3592400	44033	1748	41448	266945;266946;266947	358109;358110;358111	358109			1	
RVVLGDSVSTGTTDQQGGVAEVK	1	Unmodified	2302.1765	0.1764674	1641	P49069	CAMLG	Calcium signal-modulating cyclophilin ligand	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.398	43.82	3	0.00021865	36684	160511_QHF_FH_JSI10i_3	32.04	23.753			1.1024	1.2979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1024	1.2979	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22229000	7576600	14652000	6364600	0	6364600	15864000	7576600	8287600	0	0	0	0	0	0	44034	1641	41449	266948;266949	358112;358113;358114	358113			3	
RVVPLVQMGETDANVAK	1	Unmodified	1825.972	0.9720177	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				55.811	54.245	3	0.00028435	44539	160511_QHF_FH_JSI9i_3	67.646	61.614			1.3697	1.1396	32.894	2	2	Median	1.3697	1.1396	32.894	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33406000	17049000	16358000	33406000	17049000	16358000	0	0	0	0	0	0	0	0	0	44035	4065	41450	266950;266951	358115;358116	358116			2	
RVVSEIPVLK	1	Unmodified	1138.7074	0.7073938	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		46.669	45.4	2;3	0.0057714	37934	160511_QHF_FH_JSI10i_3	53.683	21.462			1.0612	0.98656	22.323	5	1	Median	1.1288	0.93748	7.2171	2	0	Median	0.85049	0.99289	7.2826	2	0	Median	1.6653	1.5616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139880000	69487000	70397000	66189000	33231000	32958000	51756000	26387000	25369000	21939000	9869100	12070000	0	0	0	44036	5583	41451	266952;266953;266954;266955;266956	358117;358118;358119;358120;358121;358122;358123	358118			7	
RVVVYGGEGDNLK	1	Unmodified	1404.7361	0.73612775	2946	Q5T447	HECTD3	E3 ubiquitin-protein ligase HECTD3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			30.191	28.848	3	0.018475	24050	160511_QHF_FH_JSI10i_3	38.189	32.003			1.7495	2.002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7495	2.002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14385000	6581100	7804100	0	0	0	14385000	6581100	7804100	0	0	0	0	0	0	44037	2946	41452	266957	358124	358124			1	
RVVYPLEK	1	Unmodified	1002.5862	0.58621603	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			28.019	26.71	2	0.051448	22048	160511_QHF_FH_JSI10i_3	51.066	25.329			0.41834	0.46584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41834	0.46584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20244000	16170000	4073500	0	0	0	20244000	16170000	4073500	0	0	0	0	0	0	44038	453	41453	266958	358125	358125			1	
RVYATILNAGTNTDGFK	1	Unmodified	1839.9479	0.94791144	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	64.37	55.213	3	1.0325E-08	30327	160513_QHF_FH_JSI10Kac_6	118.31	107.65			0.87813	0.75335	21.882	5	1	Median	1.0609	0.90355	25.711	2	1	Median	0.91027	1.082	NaN	1	0	Median	0.73402	0.71033	NaN	1	0	Median	0.70941	0.71999	NaN	1	0	Median	186310000	106110000	80201000	77025000	37681000	39345000	66596000	43329000	23267000	22875000	12980000	9895600	19816000	12123000	7693300	44039	1650	41454	266959;266960;266961;266962;266963	358126;358127;358128;358129;358130	358130			5	
RVYDQVGTQEFEDVSYESTLK	1	Unmodified	2492.1707	0.17071332	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	2	3	65.874	65.055	3	6.0455E-18	57570	160511_QHF_FH_JSI10i_2	142.04	138.75			0.76776	0.75949	10.484	6	2	Median	0.83656	0.71619	NaN	1	0	Median	0.71735	0.87397	NaN	1	0	Median	0.74902	0.72994	9.7467	2	0	Median	0.75498	0.80409	12.206	2	2	Median	466590000	250410000	216180000	88551000	41599000	46952000	115250000	63258000	51995000	213020000	115440000	97577000	49769000	30117000	19652000	44040	1787	41455	266964;266965;266966;266967;266968;266969;266970;266971;266972	358131;358132;358133;358134;358135;358136;358137;358138;358139;358140;358141;358142;358143;358144;358145;358146;358147	358146			17	
RVYGSFLVNPESGYNVSLLYDLENLPASK	1	Unmodified	3243.6452	0.64519406	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			94.748	87.382	3	4.1376E-59	51052	160513_QHF_FH_JSI10Kac_6	176.26	164.52			0.87579	0.88784	12.138	2	0	Median	0.95375	0.81482	NaN	1	0	Median	0.8042	0.96741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	220680000	110890000	109790000	72104000	37928000	34176000	148580000	72963000	75616000	0	0	0	0	0	0	44041	256	41456	266973;266974	358148;358149;358150	358150			3	
RVYSLFLDESR	0	Unmodified	1383.7147	0.71466402	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			62.005	53.64	3	0.032643	29501	160513_QHF_FH_JSI10Kac_6	33.195	24.145			1.316	1.5241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.316	1.5241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14201000	5139000	9061600	0	0	0	14201000	5139000	9061600	0	0	0	0	0	0	44042	5487	41457	266975	358151	358151			0	
RWDDSQK	1	Unmodified	933.43044	0.43044367	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		6.1221	6.1221	2	0.0086409	3880	160511_QHF_FH_JSI11i_3	83.206	65.82			1.1876	1.1127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1876	1.1127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73979000	47983000	25995000	0	0	0	0	0	0	73979000	47983000	25995000	0	0	0	44043	2738	41458	266976;266977	358152;358153	358152			2	
RWELSSDQPYL	0	Unmodified	1392.6674	0.66737948	653	O95182	NDUFA7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	69.629	68.985	2	0.0010572	59675	160511_QHF_FH_JSI12i_3	66.568	62.269			1.0554	1.0279	15.379	6	2	Median	1.1257	0.94795	NaN	1	0	Median	0.76987	0.93573	NaN	1	1	Median	1.1491	1.092	27.6	2	1	Median	1.0554	1.1424	3.4845	2	0	Median	239020000	123280000	115740000	40315000	22475000	17840000	37242000	23504000	13738000	75512000	36476000	39036000	85950000	40820000	45130000	44044	653	41459	266978;266979;266980;266981;266982;266983	358154;358155;358156;358157;358158	358157			5	
RWEVADLQPQLK	1	Unmodified	1481.7991	0.79906235	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	2	2		62.061	61.264	2;3	0.00028855	54216	160511_QHF_FH_JSI11i_3	64.65	52.858			0.94931	1.0414	17.267	5	2	Median	1.1507	1.0184	NaN	1	0	Median	0.94204	1.0877	0.85718	2	1	Median	0.91387	0.86788	25.778	2	1	Median	NaN	NaN	NaN	0	0	Median	405490000	211070000	194420000	32833000	14713000	18120000	149760000	91564000	58194000	222900000	104790000	118110000	0	0	0	44045	1216	41460	266984;266985;266986;266987;266988	358159;358160;358161;358162;358163;358164	358159			6	
RWFGFLEAQQAFQSVGTK	1	Unmodified	2099.0589	0.058858868	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.975	78.349	3	1.9017E-07	43669	160513_QHF_FH_JSI10Kac_6	104.84	89.909			0.64958	0.7683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64958	0.7683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100820000	63523000	37293000	0	0	0	100820000	63523000	37293000	0	0	0	0	0	0	44046	878	41461	266989	358165;358166	358166			2	
RWIGSETDLEPPVVK	1	Unmodified	1724.9097	0.90973501	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			64.139	62.638	2;3	0.028548	52471	160511_QHF_FH_JSI10i_3	44.765	21.16			1.2994	1.0726	NaN	1	0	Median	1.2994	1.0726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70389000	30339000	40050000	70389000	30339000	40050000	0	0	0	0	0	0	0	0	0	44047	227	41462	266990;266991	358167;358168	358167			1	
RWIYEDVER	0	Unmodified	1264.62	0.62003536	388	O43852	CALU	Calumenin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							3	3			45.862	44.27	2;3	0.00049423	36242	160511_QHF_FH_JSI9i_3	60.434	47.08			1.3279	1.1053	3.4975	3	1	Median	1.332	1.0884	2.1772	2	1	Median	0.94449	1.1492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	306340000	142140000	164190000	224240000	94554000	129680000	82099000	47587000	34512000	0	0	0	0	0	0	44048	388	41463	266992;266993;266994;266995;266996;266997	358169;358170;358171;358172;358173;358174;358175;358176	358174			8	
RWLPAGDALLQMITIHLPSPVTAQK	1	Unmodified	2755.5207	0.52072601	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	96.678	88.063	3;4	3.0482E-27	47736	160513_QHF_FH_JSI12Kac_6	137.24	116.34			0.91837	0.99453	14.246	5	0	Median	1.3827	1.1739	NaN	1	0	Median	0.91837	1.0774	NaN	1	0	Median	0.90407	0.8647	NaN	1	0	Median	0.87067	0.91401	11.94	2	0	Median	3136400000	1625500000	1510900000	704120000	297080000	407040000	997220000	573960000	423260000	474560000	261440000	213120000	960510000	493010000	467500000	44049	1033	41464	266998;266999;267000;267001;267002	358177;358178;358179;358180;358181;358182;358183;358184;358185	358182			9	
RWPLMIDPQDQANRWIR	0	Unmodified	2194.1218	0.12181025	4588	Q9C0G6	DNAH6	Dynein heavy chain 6, axonemal	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			32.657	24.346	7	0.061023	13750	160513_QHF_FH_JSI10Kac_6	2.8971	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16634000	0	16634000	0	0	0	16634000	0	16634000	0	0	0	0	0	0	44050	4588	41465	267003	358186	358186			1	
RWTFEEGIK	1	Unmodified	1164.5928	0.59275797	3320	Q86UA1	PRPF39	Pre-mRNA-processing factor 39	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.099	45.537	3	0.011486	38045	160511_QHF_FH_JSI10i_3	39.848	31.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44051	3320	41466	267004	358187	358187			1	
RWVNEAQEAASSDNIMVQYHALGLLYHVR	0	Unmodified	3369.6677	0.66767761	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			81.872	76.279	5	9.3052E-14	42109	160513_QHF_FH_JSI10Kac_6	103.85	98.367			1.1017	1.3119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1017	1.3119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98333000	45983000	52350000	0	0	0	98333000	45983000	52350000	0	0	0	0	0	0	44052	5708	41467	267005	358188	358188			1	
RWYPEEYEFAPK	1	Unmodified	1613.7514	0.75144346	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		57.433	57.433	2;3	0.0020577	50907	160511_QHF_FH_JSI11i_3	49.929	45.128			0.66883	0.63284	10.93	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66883	0.63284	10.93	2	1	Median	NaN	NaN	NaN	0	0	Median	63796000	38966000	24830000	0	0	0	0	0	0	63796000	38966000	24830000	0	0	0	44053	5576	41468	267006;267007	358189;358190	358189			2	
RYDDPEVQK	1	Unmodified	1148.5462	0.54620171	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.52	7	8	8				7	2		6	9	8	9	13.318	10.773	2;3	6.1603E-08	8939	160511_QHF_FH_JSI12i_2	141.88	99.899			0.99588	0.97504	20.537	31	1	Median	1.1553	0.96087	29.018	6	1	Median	0.81526	0.96704	18.831	8	0	Median	1.2064	1.1817	19.079	8	0	Median	0.86713	0.93924	14.677	9	0	Median	11706000000	5732800000	5972800000	1896800000	851560000	1045200000	2966400000	1624500000	1341900000	3384200000	1543200000	1841100000	3458200000	1713600000	1744600000	44054	1480	41469	267008;267009;267010;267011;267012;267013;267014;267015;267016;267017;267018;267019;267020;267021;267022;267023;267024;267025;267026;267027;267028;267029;267030;267031;267032;267033;267034;267035;267036;267037;267038;267039	358191;358192;358193;358194;358195;358196;358197;358198;358199;358200;358201;358202;358203;358204;358205;358206;358207;358208;358209;358210;358211;358212;358213;358214;358215;358216;358217;358218;358219;358220;358221;358222;358223;358224;358225;358226;358227;358228;358229;358230;358231;358232;358233;358234;358235;358236;358237;358238;358239;358240;358241;358242;358243;358244;358245;358246;358247;358248;358249;358250;358251;358252;358253	358199			60	
RYDDPEVQKDIK	2	Acetyl (K)	1546.7627	0.76273643	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	2			By MS/MS	By MS/MS	15	0.816							1	1	1			2	1	42.486	32.405	2	0.03298	19085	160513_QHF_FH_JSI12Kac_4	80.763	62.899			0.88936	0.91568	33.124	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7375	0.72447	NaN	1	0	Median	1.0725	1.1574	NaN	1	0	Median	19513000	10638000	8874800	0	0	0	0	0	0	5025300	2949100	2076200	14488000	7689100	6798500	44055	1480	41470	267040;267041;267042	358254;358255	358255	1470;1481		2	
RYDGLKYDVK	2	Acetyl (K)	1297.6667	0.6666512	2688	Q15631	TSN	Translin	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		46.248	36.589	3	0.039054	20054	160513_QHF_FH_JSI11Kac_6	42.843	33.521			0.57341	0.54348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57341	0.54348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17481000	10546000	6935600	0	0	0	0	0	0	17481000	10546000	6935600	0	0	0	44056	2688	41471	267043	358256	358256			0	
RYDGSQQALDLK	1	Unmodified	1392.6997	0.69974224	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									1	3	28.372	28.338	2;3	0.0007407	24373	160511_QHF_FH_JSI11i_3	66.004	58.221			0.818	0.88313	33.356	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5768	1.5017	NaN	1	1	Median	0.818	0.89482	15.352	3	3	Plateau	230720000	111250000	119470000	0	0	0	0	0	0	56185000	23468000	32718000	174540000	87783000	86757000	44057	5257	41472	267044;267045;267046;267047	358257;358258;358259;358260	358257			4	
RYDSNSGGER	0	Unmodified	1139.4956	0.49556312	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							1	4			2.084	1.6881	2;3	0.030662	727	160511_QHF_FH_JSI10i_3	42.243	28.036			0.69516	0.80904	32.791	5	1	Median	1.3912	1.2002	NaN	1	0	Median	0.59857	0.71936	29.596	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50002000	28788000	21214000	11917000	4621600	7295600	38085000	24166000	13918000	0	0	0	0	0	0	44058	1983	41473	267048;267049;267050;267051;267052	358261;358262;358263;358264	358262			3	
RYEDQELTGK	1	Unmodified	1237.5939	0.59388018	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	14.033	13.773	2	0.002412	10856	160511_QHF_FH_JSI11i_2	77.662	47.099			0.72388	0.7502	23.508	3	3	Median	NaN	NaN	NaN	0	0	Median	0.40855	0.50121	NaN	1	1	Median	0.72388	0.7502	NaN	1	1	Median	0.73289	0.75592	NaN	1	1	Median	86244000	47138000	39105000	0	0	0	24965000	15054000	9910700	35784000	17444000	18340000	25495000	14640000	10855000	44059	5330	41474	267053;267054;267055	358265;358266;358267	358265			3	
RYEEELEINDFPQTAR	0	Unmodified	2008.949	0.94903365	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		57.366	57.366	3	0.0024528	50766	160511_QHF_FH_JSI11i_3	43.208	8.9483			1.4515	1.3772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4515	1.3772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130600000	62231000	68370000	0	0	0	0	0	0	130600000	62231000	68370000	0	0	0	44060	3216	41475	267056	358268	358268			1	
RYEEIVK	1	Unmodified	935.50763	0.50763136	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.63	4.94		8	8						3	5	4	5	5	16.068	14.35	2;3	0.0036448	12008	160511_QHF_FH_JSI10i_2	107.66	42.627			0.95653	0.93262	22.398	19	1	Median	1.1221	0.93977	3.0551	5	0	Median	0.79278	0.96774	35.44	4	1	Median	0.97388	0.93262	10.99	5	0	Median	0.70054	0.77566	23.759	5	0	Median	13083000000	6380300000	6703200000	1841200000	812610000	1028600000	1607500000	748980000	858570000	4645400000	2303300000	2342100000	4989300000	2515400000	2473900000	44061	2072	41476	267057;267058;267059;267060;267061;267062;267063;267064;267065;267066;267067;267068;267069;267070;267071;267072;267073;267074;267075	358269;358270;358271;358272;358273;358274;358275;358276;358277;358278;358279;358280;358281;358282;358283;358284;358285;358286;358287;358288;358289;358290;358291;358292;358293;358294;358295;358296;358297;358298	358289			30	
RYELPAPSSGQK	1	Unmodified	1331.6834	0.68336389	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			27.921	26.612	2;3	0.00044914	22037	160511_QHF_FH_JSI10i_3	77.379	57.075			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44062	585	41477	267076;267077	358299;358300	358299			2	
RYEPSDK	1	Unmodified	893.4243	0.42429566	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.2071	5.2071	2	0.048017	2909	160511_QHF_FH_JSI11i_3	43.808	23.526			1.0834	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0834	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123390000	59682000	63707000	0	0	0	0	0	0	123390000	59682000	63707000	0	0	0	44063	3341	41478	267078	358301	358301			1	
RYESQLR	0	Unmodified	950.49338	0.49337828	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			7.8203	7.2697	2	0.060831	5177	160511_QHF_FH_JSI10i_3	52.403	6.387			0.73424	0.85231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73424	0.85231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42824000	23936000	18887000	0	0	0	42824000	23936000	18887000	0	0	0	0	0	0	44064	263	41479	267079	358302	358302			1	
RYETLVGTIGK	1	Unmodified	1235.6874	0.68738664	4283	Q99547	MPHOSPH6	M-phase phosphoprotein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	1	3		43.874	43.083	2;3	0.00041874	35467	160511_QHF_FH_JSI9i_3	61.48	51.692			0.97947	0.85826	40.114	6	1	Median	1.0592	0.85826	2.3291	2	0	Median	0.76228	0.87661	NaN	1	0	Median	0.59156	0.55646	62.817	3	1	Plateau	NaN	NaN	NaN	0	0	Median	303830000	152560000	151270000	93063000	41017000	52046000	50948000	26595000	24353000	159820000	84947000	74871000	0	0	0	44065	4283	41480	267080;267081;267082;267083;267084;267085	358303;358304;358305;358306;358307;358308;358309	358309			6	
RYFDENAAEDFEK	1	Unmodified	1632.7056	0.70561548	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.037	47.037	3	0.0029417	41549	160511_QHF_FH_JSI11i_3	46.318	40.02			1.035	0.95179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.035	0.95179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53319000	22841000	30479000	0	0	0	0	0	0	53319000	22841000	30479000	0	0	0	44066	5626	41481	267086	358310	358310			1	
RYFECQAK	1	Unmodified	1100.5073	0.50731378	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.638	11.876	3	0.030409	9393	160511_QHF_FH_JSI10i_3	32.812	21.209			2.4636	2.8434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4636	2.8434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32461000	10721000	21740000	0	0	0	32461000	10721000	21740000	0	0	0	0	0	0	44067	4266	41482	267087	358311	358311			1	
RYFSEGDK	1	Unmodified	1000.4614	0.46140945	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		11.533	11.161	2;3	0.012918	8727	160511_QHF_FH_JSI11i_3	32.415	28.278			1.2864	1.1907	69.152	4	0	Median	1.6527	1.3416	NaN	1	0	Median	0.88772	1.0568	NaN	1	0	Median	2.0997	1.9939	106.79	2	0	Median	NaN	NaN	NaN	0	0	Median	393170000	136850000	256320000	26382000	9231200	17151000	54931000	31331000	23601000	311850000	96289000	215560000	0	0	0	44068	1182	41483	267088;267089;267090;267091	358312;358313;358314;358315;358316	358313			5	
RYFYFYNTGLQNQR	0	Unmodified	1868.8958	0.89581629	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	67.765	58.947	3	1.827E-11	31273	160513_QHF_FH_JSI9Kac_6	122.46	114.95			1.2209	1.1584	12.506	3	2	Plateau	1.2209	1.0572	NaN	1	0	Median	1.0637	1.2692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2408	1.343	NaN	1	1	Median	134040000	62236000	71805000	47429000	19556000	27873000	75009000	37490000	37519000	0	0	0	11603000	5189900	6412900	44069	1615	41484	267092;267093;267094	358317;358318;358319;358320	358318			4	
RYIFDNVAK	1	Unmodified	1124.5978	0.59784335	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.68		1	8						3	3	4	2	3	41.95	38.796	2;3	8.0302E-07	31723	160511_QHF_FH_JSI9i_3	123.35	108.34			0.80866	0.76455	14.589	11	2	Median	0.81206	0.63923	14.184	3	1	Median	0.6255	0.72323	16.418	4	1	Median	0.81942	0.77225	1.4168	2	0	Median	0.86615	0.89542	8.2396	2	0	Median	5424700000	2715600000	2709100000	1938300000	914920000	1023400000	1612200000	750020000	862220000	1736700000	971590000	765120000	137400000	79040000	58363000	44070	2652	41485	267095;267096;267097;267098;267099;267100;267101;267102;267103;267104;267105;267106	358321;358322;358323;358324;358325;358326;358327;358328;358329;358330;358331;358332;358333;358334;358335;358336;358337;358338;358339;358340	358331			20	
RYIPDAMNLILLLVTEK	1	Unmodified	2001.1333	0.13326936	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.106	91.007	3	7.7881E-07	54515	160513_QHF_FH_JSI10Kac_6	104.61	94.687			0.70529	0.75581	27.121	3	0	Plateau	1.4449	1.2604	NaN	1	0	Median	0.7775	0.89097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70529	0.73846	NaN	1	0	Median	317990000	162190000	155810000	82057000	30865000	51192000	111680000	59070000	52614000	0	0	0	124250000	72252000	52000000	44071	1544	41486	267107;267108;267109	358341;358342;358343;358344	358344			4	
RYIPETLNK	1	Unmodified	1132.6241	0.6240581	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				29.698	28.318	2	0.033102	23096	160511_QHF_FH_JSI9i_3	39.622	24.949			0.91904	0.75617	NaN	1	0	Median	0.91904	0.75617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27700000	16181000	11519000	27700000	16181000	11519000	0	0	0	0	0	0	0	0	0	44072	1230	41487	267110	358345	358345			1	
RYLEEQK	1	Unmodified	964.49779	0.49779495	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			8.7959	8.2825	2	0.0083202	5990	160511_QHF_FH_JSI10i_3	84.568	43.622			1.1532	1.1627	33.966	2	0	Median	1.0475	0.91442	NaN	1	0	Median	1.2696	1.4783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	226110000	96262000	129840000	104730000	57981000	46749000	121380000	38281000	83095000	0	0	0	0	0	0	44073	5542	41488	267111;267112;267113	358346;358347;358348;358349;358350	358347			5	
RYLENGK	1	Unmodified	878.46102	0.46101552	788;967;1352;1354;2788;1353	P10316;P01892;P01891;P30453;P30457;P30459;P10314;P18462;P30480;P30460;P18463;P01889;Q29718;Q31610;P30486;P03989;Q04826;P30488;P30487;P30485;P30483;P30461;P30508;Q29960;P30510;Q07000;P30505;Q9TNN7;P30504;P30501;Q29963;P10321;Q29865;P30499;P01893	HLA-A;HLA-B;HLA-C;HLA-H	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		6.4959	6.148	2	0.018254	4197	160511_QHF_FH_JSI10i_3	60.682	40.127			1.0784	1.003	17.691	3	0	Median	1.5285	1.2776	NaN	1	0	Median	0.76465	0.90523	NaN	1	0	Median	1.0784	1.003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	282850000	133840000	149010000	102170000	36195000	65978000	77451000	41873000	35578000	103230000	55775000	47453000	0	0	0	44074	967;788;1352;1353;1354;2788	41489	267114;267115;267116	358351;358352	358351			2	
RYLKSEPIPESNDGPVK	2	Acetyl (K)	1970.0109	0.010905622	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		55.375	45.009	3	0.00013485	24227	160513_QHF_FH_JSI11Kac_6	88.427	78.639			0.3976	0.38478	80.324	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1474	1.3502	NaN	1	0	Median	0.35034	0.34118	17.01	2	0	Median	NaN	NaN	NaN	0	0	Median	43956000	32923000	11033000	0	0	0	4182300	2032100	2150200	39774000	30891000	8882700	0	0	0	44075	1344	41490	267117;267118;267119	358353;358354;358355	358353	1275		3	
RYLLISAPLWIK	1	Unmodified	1471.8915	0.89150618	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	1	2	85.34	77.615	2;3	1.0145E-07	41159	160513_QHF_FH_JSI12Kac_6	130.01	117.13			0.78832	0.76952	26.899	5	5	Median	0.82267	0.72248	NaN	1	1	Median	0.85171	0.97646	10.486	2	2	Median	0.54225	0.51517	NaN	1	1	Median	0.73373	0.76952	NaN	1	1	Median	427250000	233930000	193320000	79385000	42314000	37071000	268930000	142180000	126750000	27925000	17345000	10580000	51014000	32088000	18926000	44076	2993	41491	267120;267121;267122;267123;267124;267125;267126;267127	358356;358357;358358;358359;358360;358361;358362;358363	358359			8	
RYLLNFIAAMPLISLVNNFLK	1	Unmodified	2449.3919	0.39194367	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			102.5	96.776	3	0.00050285	57220	160513_QHF_FH_JSI10Kac_6	90.316	73.81			0.92978	1.094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92978	1.094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88422000	40867000	47555000	0	0	0	88422000	40867000	47555000	0	0	0	0	0	0	44077	1304	41492	267128	358364	358364			1	
RYNEDLELEDAIHTAILTLK	1	Unmodified	2356.2274	0.22744034	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		96.09	93.23	3	8.8914E-09	90438	160511_QHF_FH_JSI11i_3	106.69	87.313			0.74609	0.7827	31.001	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84261	0.97454	NaN	1	1	Median	0.66063	0.62863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	347210000	275330000	71884000	0	0	0	56037000	36082000	19955000	291180000	239250000	51929000	0	0	0	44078	1265	41493	267129;267130	358365;358366;358367	358365			3	
RYNLDDYR	0	Unmodified	1113.5203	0.52032131	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	32.496	23.703	2;3	0.0029814	13549	160513_QHF_FH_JSI10Kac_6	51.749	45.967			1.2414	1.12	22.334	7	0	Median	1.3683	1.1683	12.61	2	0	Median	0.68183	0.80645	17.906	2	0	Median	1.1815	1.1656	5.6444	2	0	Median	1.256	1.3619	NaN	1	0	Median	113050000	62109000	50943000	15644000	5989200	9655100	82657000	48865000	33792000	9605000	4854500	4750600	5145300	2399900	2745400	44079	2947	41494	267131;267132;267133;267134;267135;267136;267137;267138;267139	358368;358369;358370;358371;358372;358373;358374;358375;358376	358375			6	
RYNVYGYTGQGVFSNVVR	0	Unmodified	2078.0334	0.033372399	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				73.152	64.567	3	0.00061016	34403	160513_QHF_FH_JSI9Kac_6	74.618	65.213			1.5094	1.3111	NaN	1	1	Median	1.5094	1.3111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9277800	3500100	5777800	9277800	3500100	5777800	0	0	0	0	0	0	0	0	0	44080	2432	41495	267140	358377	358377			1	
RYPTAEEILVLGGYLR	0	Unmodified	1849.0098	0.0097834104	3083	Q6NYC8	PPP1R18	Phostensin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.216	97.232	3	0.00012198	84282	160511_QHF_FH_JSI12i_3	60.209	50.152			1.0425	1.126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0425	1.126	NaN	1	0	Median	11382000	6457300	4924400	0	0	0	0	0	0	0	0	0	11382000	6457300	4924400	44081	3083	41496	267141	358378	358378			1	
RYQQEVDR	0	Unmodified	1092.5312	0.53122035	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			6.3914	5.8774	2;3	0.0038316	3876	160511_QHF_FH_JSI9i_3	44.349	30.142			1.3042	1.0767	18.011	3	0	Median	1.3955	1.152	9.5563	2	0	Median	0.73946	0.86273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183500000	84165000	99333000	138450000	58644000	79807000	45047000	25521000	19526000	0	0	0	0	0	0	44082	1400	41497	267142;267143;267144;267145	358379;358380;358381;358382	358381			4	
RYSDLTTLVAFPSSSVYPTK	1	Unmodified	2231.1474	0.1473991	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			86.242	85.044	3	1.6575E-08	71131	160511_QHF_FH_JSI10i_3	100.67	87.483			1.0521	1.0278	5.6	2	0	Median	1.1956	0.98794	NaN	1	0	Median	0.92591	1.0694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45396000	22737000	22659000	21222000	9014000	12208000	24174000	13723000	10450000	0	0	0	0	0	0	44083	1254	41498	267146;267147;267148	358383;358384;358385;358386;358387;358388;358389;358390	358386			8	
RYSPDELR	0	Unmodified	1034.5145	0.51450765	3758	Q8WUB8	PHF10	PHD finger protein 10	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.538	17.462	2	0.052623	14185	160511_QHF_FH_JSI10i_3	50.607	30.325			0.84807	0.98813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84807	0.98813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10168000	4612300	5555400	0	0	0	10168000	4612300	5555400	0	0	0	0	0	0	44084	3758	41499	267149	358391	358391			1	
RYSSEVATESPLDFTK	1	Unmodified	1828.8843	0.88430813	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		55.753	54.934	3	0.00040781	48612	160511_QHF_FH_JSI11i_3	67.251	45.391			1.173	1.3105	59.874	3	2	Median	NaN	NaN	NaN	0	0	Median	1.5085	1.772	42.666	2	1	Median	0.78582	0.72349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	160460000	66624000	93835000	0	0	0	69868000	25373000	44496000	90591000	41251000	49340000	0	0	0	44085	3748	41500	267150;267151;267152	358392;358393;358394;358395	358392			4	
RYTIYSPK	1	Unmodified	1026.5498	0.54983053	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			24.64	23.342	2;3	0.00086746	19227	160511_QHF_FH_JSI10i_3	65.224	26.202			1.1296	1.1069	9.5415	4	0	Median	1.341	1.107	0.33499	2	0	Median	0.87915	1.0077	13.59	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174940000	92227000	82711000	69619000	33055000	36564000	105320000	59172000	46147000	0	0	0	0	0	0	44086	5215	41501	267153;267154;267155;267156	358396;358397;358398;358399;358400;358401	358396			6	
RYTLNVLEDLGDGQK	1	Unmodified	1719.8792	0.87916317	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		73.899	73.029	2;3	1.7894E-05	60391	160511_QHF_FH_JSI9i_3	114.33	103.47			1.0176	1.0132	10.963	5	0	Median	1.3725	1.1264	0.24342	2	0	Median	0.87947	1.0132	NaN	1	0	Median	0.97572	0.92167	8.8252	2	0	Median	NaN	NaN	NaN	0	0	Median	541010000	269050000	271960000	118420000	49861000	68558000	98971000	50498000	48474000	323620000	168690000	154930000	0	0	0	44087	1039	41502	267157;267158;267159;267160;267161;267162	358402;358403;358404;358405;358406;358407;358408;358409;358410	358408			9	
RYVESLWK	1	Unmodified	1079.5764	0.57637963	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		40.027	39.274	2;3	0.00077638	33100	160511_QHF_FH_JSI10i_3	77.732	45.412			0.96508	0.99611	16.04	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95928	1.1157	NaN	1	0	Median	0.97092	0.88931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213590000	92890000	120700000	0	0	0	62177000	31348000	30829000	151410000	61542000	89867000	0	0	0	44088	1604	41503	267163;267164;267165	358411;358412;358413	358413			3	
RYVLEEAEQLEPR	0	Unmodified	1630.8315	0.83148469	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	1	By matching	By MS/MS			2.33	0.471		2	1							1	2			56.752	55.799	3	0.019567	46407	160511_QHF_FH_JSI10i_3	34.444	22.83			1.1066	1.1238	10.674	2	0	Median	1.2356	1.0421	NaN	1	0	Median	0.99108	1.2119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59434000	31857000	27577000	26769000	14792000	11977000	32665000	17065000	15600000	0	0	0	0	0	0	44089	3582	41504	267166;267167;267168	358414;358415	358414			2	
RYVYYYSYLLK	1	Unmodified	1529.7919	0.79185171	1911	P60484	PTEN	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	74.274	65.867	2;3	0.00077403	35137	160513_QHF_FH_JSI9Kac_6	87.298	50.107			1.0371	1.1597	1.4093	2	1	Median	NaN	NaN	NaN	0	0	Median	0.97796	1.1713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0999	1.1482	NaN	1	1	Median	69063000	28931000	40132000	0	0	0	32534000	15300000	17234000	0	0	0	36529000	13631000	22898000	44090	1911	41505	267169;267170;267171;267172	358416;358417;358418;358419;358420	358416			5	
SAAAAAATR	0	Unmodified	788.41407	0.41406533	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	4.8205	4.4342	2	0.0037461	2443	160511_QHF_FH_JSI11i_2	58.981	1.5177			1.3423	1.1574	13.445	3	0	Plateau	1.4487	1.2053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94531	0.97748	NaN	1	0	Median	0.83467	0.938	NaN	1	0	Median	2595700000	1188400000	1407300000	1784200000	763530000	1020700000	0	0	0	651780000	339930000	311850000	159710000	84917000	74792000	44091	230	41506	267173;267174;267175	358421	358421			1	
SAAAGLGGGGSR	0	Unmodified	959.47846	0.4784565	4513	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.6253	8.0009	2	0.0085911	5763	160511_QHF_FH_JSI12i_2	48.998	30.773			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44092	4513	41507	267176	358422	358422			1	
SAAAIALPPIAK	1	Unmodified	1121.6808	0.6808447	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3.8	5.11	3	1					1				1	3	1	64.922	64.428	2	0.0022502	34584	160513_QHF_FH_JSI11Kac_4	76.827	52.672			1.2014	1.2079	16.827	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4358	1.6141	NaN	1	0	Median	1.1659	1.151	7.2793	2	0	Median	1.2144	1.204	NaN	1	0	Median	73115000	30689000	42425000	0	0	0	18188000	6550100	11638000	41344000	19282000	22062000	13583000	4857700	8725700	44093	1718	41508	267177;267178;267179;267180;267181	358423;358424	358424			1	
SAAASNLSGLSLQEAQQILNVSK	1	Unmodified	2328.2285	0.22850297	5589	Q9Y3D7	PAM16	Mitochondrial import inner membrane translocase subunit TIM16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	100.37	100.27	3	8.9764E-39	86253	160511_QHF_FH_JSI12i_2	194.56	180.01			0.8107	0.90238	16.9	10	0	Median	1.1358	0.95097	8.6633	2	0	Median	0.68644	0.82346	18.36	2	0	Median	0.79592	0.79316	19.256	3	0	Plateau	0.83669	0.92773	12.843	3	0	Median	837370000	460830000	376540000	138960000	64157000	74801000	175760000	110690000	65079000	267080000	149840000	117240000	255570000	136150000	119420000	44094	5589	41509	267182;267183;267184;267185;267186;267187;267188;267189;267190;267191	358425;358426;358427;358428;358429;358430;358431;358432;358433;358434;358435;358436;358437;358438;358439;358440;358441	358430			15	
SAAATEEEK	1	Unmodified	934.42436	0.42435524	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.0403	4.4643	2	0.0078668	2373	160511_QHF_FH_JSI9i_1	53.751	34.657			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44095	3267	41510	267192	358442	358442			1	
SAADAEGYLAHPVNAYK	1	Unmodified	1775.8479	0.84786304	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0			By matching	By MS/MS	1.5	0.5	1	1										1	1	49.399	48.492	3	0.023859	41492	160511_QHF_FH_JSI12i_2	42.818	36.914			1.2634	1.2872	31.552	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7182	1.609	NaN	1	0	Median	0.92893	1.0298	NaN	1	0	Median	128610000	67774000	60835000	0	0	0	0	0	0	50600000	28033000	22567000	78008000	39741000	38267000	44096	294	41511	267193;267194	358443	358443			0	
SAADEVDGLGVARPHYGSVLDNER	0	Acetyl (Protein N-term)	2568.2205	0.22045748	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	3.01	3	7	7					1		3	5	7	3	66.876	65.695	2;3	1.1968E-65	58073	160511_QHF_FH_JSI9i_2	246.73	240.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44097	1600	41512	267195;267196;267197;267198;267199;267200;267201;267202;267203;267204;267205;267206;267207;267208;267209;267210;267211;267212	358444;358445;358446;358447;358448;358449;358450;358451;358452;358453;358454;358455;358456;358457;358458;358459;358460;358461;358462;358463;358464	358457			21	
SAADEVDGLGVARPHYGSVLDNERLTAEEMDER	0	Acetyl (Protein N-term)	3642.6856	0.68563168	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	1	0	2		By MS/MS			2	0		1									1			77.995	77.264	4	0.0019153	68700	160511_QHF_FH_JSI10i_2	34.213	25.224			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44098	1600	41513	267213	358465	358465			1	
SAADSISESVPVGPK	1	Unmodified	1442.7253	0.72528829	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	5.9	7				1	5				2	4	3	4	49.787	45.942	2;3	9.4063E-52	40742	160511_QHF_FH_JSI9i_1	259.55	241.65			0.87431	0.89868	21.717	11	3	Median	1.1446	0.94251	13.267	2	0	Median	0.85559	0.98798	20.121	4	2	Median	0.89178	0.88211	18.352	3	0	Median	0.6379	0.69292	36.771	2	1	Median	2192600000	1200700000	991860000	602110000	297410000	304710000	604450000	357740000	246710000	625600000	367460000	258130000	360420000	178100000	182320000	44099	1573	41514	267214;267215;267216;267217;267218;267219;267220;267221;267222;267223;267224;267225;267226	358466;358467;358468;358469;358470;358471;358472;358473;358474;358475;358476;358477;358478;358479;358480;358481;358482;358483;358484	358478			18	
SAAEAGGVFHR	0	Acetyl (Protein N-term)	1142.5469	0.54687041	4369	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	3	3	2	37.422	33.594	2	3.537E-07	29717	160511_QHF_FH_JSI10i_2	119.21	101.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44100	4369	41515	267227;267228;267229;267230;267231;267232;267233;267234;267235	358485;358486;358487;358488;358489;358490;358491;358492;358493;358494	358494			10	
SAAEAVATSVLTQMASQR	0	Unmodified	1819.9098	0.90981137	1119	P17544	ATF7	Cyclic AMP-dependent transcription factor ATF-7	yes	yes	0	0	0	0	By MS/MS				2.5	0.5		1	1							2				86.861	86.018	3	0.0020201	70498	160511_QHF_FH_JSI9i_3	39.849	30.061			2.7572	2.4007	66.753	2	1	Median	2.7572	2.4007	66.753	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23966000	7312700	16654000	23966000	7312700	16654000	0	0	0	0	0	0	0	0	0	44101	1119	41516	267236;267237	358495;358496;358497	358495			3	
SAAEGLGFSYTEPNYWIR	0	Unmodified	2059.964	0.96395543	3407	Q8IVL5	LEPREL1	Prolyl 3-hydroxylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	90.433	89.853	2	2.6749E-11	78927	160511_QHF_FH_JSI11i_2	169.62	154.59			0.90658	0.93958	16.505	7	7	Median	0.78289	0.68866	NaN	1	1	Median	0.78707	0.94004	21.562	2	2	Median	0.96535	0.94439	3.4369	2	2	Median	0.89474	1.0126	10.585	2	2	Median	104260000	58467000	45793000	13069000	8324100	4745200	32867000	18863000	14004000	36651000	20158000	16493000	21673000	11122000	10551000	44102	3407	41517	267238;267239;267240;267241;267242;267243;267244	358498;358499;358500;358501;358502;358503;358504	358501			7	
SAAETVTK	1	Unmodified	805.41815	0.41814765	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.38	4			1	3	4	1			2	3	5	3	7.6337	1.6582	2	0.00027425	3895	160511_QHF_FH_JSI12i_1	114.28	45.366			0.97557	0.98614	10.708	12	1	Median	1.0361	0.95175	NaN	1	0	Median	0.85535	1.0269	6.425	3	0	Median	1.0265	0.99326	13.282	5	1	Median	0.84295	0.86548	12.031	3	0	Plateau	37647000000	18610000000	19037000000	8943500000	3931700000	5011800000	10273000000	5503500000	4769600000	8783100000	3938600000	4844500000	9647000000	5235900000	4411100000	44103	1959	41518	267245;267246;267247;267248;267249;267250;267251;267252;267253;267254;267255;267256;267257	358505;358506;358507;358508;358509;358510;358511;358512;358513;358514;358515;358516;358517;358518;358519;358520;358521;358522;358523;358524;358525	358507			21	
SAAGATFDLSLFVAQK	1	Unmodified	1624.8461	0.84607213	4978	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.11	94.776	3	0.00049677	83108	160511_QHF_FH_JSI11i_2	64.394	51.257			2.3945	2.3359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3945	2.3359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5759100	2106700	3652300	0	0	0	0	0	0	5759100	2106700	3652300	0	0	0	44104	4978	41519	267258	358526	358526			1	
SAAKAVKPK	3	Acetyl (K)	940.57057	0.57056597	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	2		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		10.178	0.52391	2;3	0.036579	3429	160513_QHF_FH_JSI10Kac_5	44.318	37.097			0.77184	0.92407	6.1127	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77184	0.92407	6.1127	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14763000	7559100	7203800	0	0	0	14763000	7559100	7203800	0	0	0	0	0	0	44105	1099	41520	267259;267260;267261	358527;358528	358528			2	
SAALPIFSSFVSNWDEATK	1	Unmodified	2069.0106	0.010571271	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	102.08	102	2;3	6.8472E-118	91187	160511_QHF_FH_JSI11i_3	276.19	247.12			1.0793	1.1706	4.4875	4	2	Median	NaN	NaN	NaN	0	0	Median	0.98259	1.1418	7.169	2	1	Median	1.235	1.1846	NaN	1	0	Median	1.1319	1.1567	NaN	1	1	Median	649800000	314270000	335530000	0	0	0	128640000	66369000	62270000	312290000	131890000	180400000	208880000	116010000	92864000	44106	596	41521	267262;267263;267264;267265	358529;358530;358531;358532;358533;358534	358529			6	
SAALQSTQSQEEFKLEDLK	2	Unmodified	2151.0695	0.069542713	3986	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	59.546	58.213	3	0.011887	49941	160511_QHF_FH_JSI12i_2	39.523	24.102			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44107	3986	41522	267266	358535	358535			1	
SAALQVTK	1	Unmodified	816.47052	0.47051757	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.303	15.859	2	0.024465	13583	160511_QHF_FH_JSI12i_1	53.493	29.725			1.2122	1.2413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2122	1.2413	NaN	1	1	Median	58090000	27190000	30900000	0	0	0	0	0	0	0	0	0	58090000	27190000	30900000	44108	3875	41523	267267	358536	358536			1	
SAAMLGNSEDHTALSR	0	Unmodified	1658.7682	0.76823251	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	4.86		10	4					3		5	3	5	4	32.343	29.955	2;3	2.8036E-52	25321	160511_QHF_FH_JSI12i_2	211.9	182.56			0.97044	1.0161	31.09	16	1	Median	1.3142	1.1085	56.631	4	1	Median	0.78298	0.97798	17.333	3	0	Plateau	1.0646	1.0556	18.013	5	0	Median	0.98473	1.0636	25.414	4	0	Median	1240200000	661590000	578620000	149800000	74216000	75580000	198600000	124770000	73835000	495730000	269420000	226310000	396070000	193180000	202890000	44109	444	41524	267268;267269;267270;267271;267272;267273;267274;267275;267276;267277;267278;267279;267280;267281;267282;267283;267284	358537;358538;358539;358540;358541;358542;358543;358544;358545;358546;358547;358548;358549;358550;358551;358552;358553;358554;358555;358556;358557;358558;358559;358560;358561;358562;358563	358542			27	
SAAMLGNSEDHTALSR	0	Oxidation (M)	1674.7631	0.76314713	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	26.378	26.341	2;3	3.9084E-05	25338	160511_QHF_FH_JSI12i_3	81.713	73.933			0.78659	0.77601	93.052	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78659	0.77601	93.052	2	0	Median	54563000	31845000	22718000	0	0	0	0	0	0	0	0	0	54563000	31845000	22718000	44110	444	41524	267285;267286;267287	358564;358565;358566	358566		172	3	
SAANVVLFDIFVNILTHNLAEPAYEADVAQLEYK	1	Unmodified	3776.9301	0.93014269	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.58	96.864	4	4.9375E-76	57283	160513_QHF_FH_JSI10Kac_6	176.18	161.59			0.97369	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97369	1.1761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	276290000	137680000	138610000	0	0	0	276290000	137680000	138610000	0	0	0	0	0	0	44111	387	41525	267288	358567;358568	358567			2	
SAAPGSLGYQWLSDGSGVFEIAEASGVR	0	Unmodified	2810.3511	0.3511373	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	101.7	101.57	3	3.8607E-08	89489	160511_QHF_FH_JSI9i_2	67.911	62.028			1.3053	1.2963	10.868	2	0	Median	1.6289	1.3998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.046	1.2004	NaN	1	0	Median	776550000	263780000	512770000	466390000	147040000	319350000	0	0	0	0	0	0	310150000	116740000	193410000	44112	2328	41526	267289;267290	358569	358569			1	
SAAPPQEK	1	Unmodified	826.41848	0.418482	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.07	4	2				2				1	2	3	2	5.903	3.8543	2	0.0061634	3292	160511_QHF_FH_JSI11i_1	63.419	42.794			1.0013	1.0178	34.514	8	0	Median	1.2619	1.028	NaN	1	0	Median	1.4198	1.7046	62.336	2	0	Median	1.0172	1.0076	4.7341	3	0	Median	0.8851	0.96318	5.2508	2	0	Median	2956600000	1446900000	1509700000	619010000	277120000	341890000	889390000	459190000	430200000	771640000	415370000	356280000	676550000	295250000	381300000	44113	1181	41527	267291;267292;267293;267294;267295;267296;267297;267298	358570;358571;358572;358573;358574;358575;358576	358570			7	
SAAPSTLDSSSTAPAQLGK	1	Unmodified	1787.8901	0.89012178	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.45	8				4	1				2	2	5	4	44.884	40.884	2;3	4.1877E-54	36423	160511_QHF_FH_JSI10i_1	274.24	242.18			0.91382	0.97944	12.81	13	1	Median	1.3661	1.0987	1.4886	2	0	Median	0.74769	0.88586	5.1504	2	0	Median	1.0138	0.9972	18.944	5	1	Median	0.90966	0.97791	3.6978	4	0	Median	1874900000	877590000	997310000	519290000	239150000	280130000	410840000	189060000	221780000	392710000	178660000	214050000	552060000	270710000	281350000	44114	5669	41528	267299;267300;267301;267302;267303;267304;267305;267306;267307;267308;267309;267310;267311	358577;358578;358579;358580;358581;358582;358583;358584;358585;358586;358587;358588;358589;358590;358591;358592;358593;358594;358595;358596;358597;358598;358599	358587			23	
SAAPSTLDSSSTAPAQLGKK	2	Unmodified	1915.9851	0.9850848	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							1	2	3	1	34.63	34.186	3	2.7951E-12	29711	160511_QHF_FH_JSI9i_2	139.9	126.49			1.1724	1.1043	23.117	7	3	Median	1.1724	0.99318	NaN	1	0	Median	0.80365	0.96351	0.82574	2	0	Median	1.5571	1.5113	6.2327	3	3	Median	1.0925	1.1043	NaN	1	0	Median	475090000	214980000	260100000	54661000	28532000	26129000	160500000	84612000	75887000	174490000	60588000	113910000	85433000	41251000	44181000	44115	5669	41529	267312;267313;267314;267315;267316;267317;267318	358600;358601;358602;358603;358604;358605;358606;358607;358608	358603			9	
SAAQAAAQTNSNAAGK	1	Unmodified	1459.7015	0.70153315	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	5.22	8	4	5	5	5	7				4	10	11	9	9.4212	5.6913	2;3	1.8512E-234	5780	160511_QHF_FH_JSI12i_1	344.55	293.44			0.93382	0.96212	41.32	31	8	Median	1.2881	1.1074	41.952	4	1	Median	0.80783	0.96328	36.896	9	3	Median	0.85939	0.83943	50.251	10	1	Median	0.96871	1.0255	35.305	8	3	Median	30828000000	14810000000	16017000000	6541000000	3020300000	3520700000	7849500000	4083600000	3765900000	8422700000	3908500000	4514300000	8014400000	3797800000	4216600000	44116	3609	41530	267319;267320;267321;267322;267323;267324;267325;267326;267327;267328;267329;267330;267331;267332;267333;267334;267335;267336;267337;267338;267339;267340;267341;267342;267343;267344;267345;267346;267347;267348;267349;267350;267351;267352	358609;358610;358611;358612;358613;358614;358615;358616;358617;358618;358619;358620;358621;358622;358623;358624;358625;358626;358627;358628;358629;358630;358631;358632;358633;358634;358635;358636;358637;358638;358639;358640;358641;358642;358643;358644;358645;358646;358647;358648;358649;358650;358651;358652;358653;358654;358655;358656;358657;358658	358620			50	
SAAQAAAQTNSNAAGKQLR	1	Acetyl (K)	1898.9559	0.95585036	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				2	1	1	33.617	25.012	3	5.6507E-06	14171	160513_QHF_FH_JSI10Kac_3	80.238	64.353			0.89205	1.0028	72.803	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4231	1.678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55916	0.59929	NaN	1	0	Median	11626000	7511800	4114600	0	0	0	4176100	1876400	2299600	1220600	1220600	0	6229700	4414700	1815000	44117	3609	41531	267353;267354;267355;267356	358659;358660;358661;358662;358663	358662	2893		5	
SAAQAAAQTNSNAAGKQLRK	2	Acetyl (K)	2027.0508	0.050813377	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	2				By MS/MS	15	0								1					1	29.417	20.157	3	0.0060017	11640	160513_QHF_FH_JSI12Kac_5	55.267	45.071			0.59767	0.67178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59767	0.67178	NaN	1	0	Median	6186500	3789600	2396800	0	0	0	0	0	0	0	0	0	6186500	3789600	2396800	44118	3609	41532	267357	358664	358664	2893		1	
SAAQLSLSSR	0	Unmodified	1018.5407	0.5407224	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	5.49		1	1				2	3		1	3	2	1	31.56	24.658	2	0.00093589	20734	160511_QHF_FH_JSI12i_3	81.338	50.048			0.78911	0.89143	34.921	7	2	Median	1.114	0.90024	NaN	1	0	Median	0.78911	0.89143	41.691	3	0	Median	0.86515	0.85538	32.462	2	1	Median	0.60297	0.60196	NaN	1	1	Median	298680000	162320000	136360000	5873900	3078500	2795400	175770000	90605000	85165000	12527000	6607100	5919600	104510000	62028000	42482000	44119	4773	41533	267358;267359;267360;267361;267362;267363;267364	358665;358666;358667;358668;358669;358670;358671	358671			7	
SAAQMEVASFLLSK	1	Unmodified	1480.7596	0.7595653	2312	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	89.697	89.043	2	9.1415E-05	78306	160511_QHF_FH_JSI11i_2	112.51	101.98			0.74809	0.90651	43.029	5	4	Median	0.60318	0.52837	NaN	1	1	Median	0.71346	0.90651	NaN	1	1	Median	1.1871	1.2121	NaN	1	0	Median	1.0892	1.1938	48.106	2	2	Median	73976000	39325000	34651000	13376000	9365800	4010600	13707000	9226600	4480400	23269000	10595000	12674000	23624000	10138000	13486000	44120	2312	41534	267365;267366;267367;267368;267369;267370	358672;358673;358674;358675;358676;358677;358678	358677			7	
SAAQPSTSPAEVQSLK	1	Unmodified	1599.8104	0.8104149	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	34.624	34.231	2	4.4751E-07	30507	160511_QHF_FH_JSI10i_1	89.629	72.687			0.97735	1.0278	16.65	3	2	Median	NaN	NaN	NaN	0	0	Median	0.79009	0.90138	NaN	1	1	Median	1.2911	1.2546	NaN	1	0	Median	0.97735	1.0278	NaN	1	1	Median	100230000	56374000	43857000	0	0	0	35510000	20343000	15168000	34804000	18809000	15995000	29917000	17223000	12694000	44121	2574	41535	267371;267372;267373;267374;267375;267376	358679;358680;358681;358682;358683;358684;358685	358684			7	
SAAQPSTSPAEVQSLKK	2	Unmodified	1727.9054	0.90537792	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	28.01	27.965	3	0.0018705	23447	160511_QHF_FH_JSI12i_3	53.21	41.065			0.86389	0.85816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86389	0.85816	NaN	1	1	Median	30087000	19246000	10841000	0	0	0	0	0	0	0	0	0	30087000	19246000	10841000	44122	2574	41536	267377	358686	358686			1	
SAASKTMNIYFPK	2	Acetyl (K);Oxidation (M)	1514.7439	0.74391524	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	0.786						2	3	4		1	3	2	3	62.849	52.417	2	6.5762E-25	28485	160513_QHF_FH_JSI10Kac_4	164.04	128.53			0.60264	0.59828	66.691	7	0	Median	1.9428	1.6239	NaN	1	0	Median	1.5466	1.8239	4.2906	2	0	Median	0.5074	0.49583	26.562	2	0	Median	0.49234	0.53718	11.684	2	0	Median	33815000	16614000	17201000	3529400	991580	2537800	11237000	3663100	7574300	10394000	6586300	3807300	8654200	5372700	3281500	44123	5495	41537	267378;267379;267380;267381;267382;267383;267384;267385;267386	358687;358688;358689;358690;358691;358692;358693;358694;358695;358696;358697;358698;358699;358700	358690	3458	2680	14	
SAASKTMNIYFPK	2	Acetyl (K)	1498.749	0.74900062	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.639							2	4	1	1	2	3	1	74.931	64.504	2	4.3704E-25	32162	160513_QHF_FH_JSI10Kac_5	171.62	122.12			0.91407	1.0457	95.585	6	1	Median	2.1636	1.8073	NaN	1	0	Median	1.5623	1.844	5.7706	2	0	Median	0.29772	0.29647	69.132	2	1	Median	0.55757	0.61773	NaN	1	0	Median	46724000	29915000	16809000	5170500	1658800	3511700	14166000	6092000	8074200	17839000	15740000	2099400	9548400	6424400	3124000	44124	5495	41537	267387;267388;267389;267390;267391;267392;267393	358701;358702;358703;358704;358705;358706;358707;358708;358709;358710;358711	358710	3458		11	
SAASPVVSSMPER	0	Unmodified	1316.6395	0.63945017	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.265	31.93	2	0.001512	28404	160511_QHF_FH_JSI10i_1	73.632	59.425			0.65441	0.76113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65441	0.76113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49839000	29005000	20835000	0	0	0	49839000	29005000	20835000	0	0	0	0	0	0	44125	1141	41538	267394	358712	358712			1	
SAASYALGSISVGNLPEYLPFVLQEITSQPK	1	Unmodified	3278.7075	0.70745996	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.3	6.6		2							4	2	2	2		101.54	96.501	3;4	7.7824E-107	55824	160513_QHF_FH_JSI10Kac_6	224.41	207.19			1.0474	0.99405	12.037	6	1	Median	1.1477	0.97593	14.618	2	0	Median	0.79615	0.91431	14.022	2	1	Median	1.0739	1.0543	10.519	2	0	Median	NaN	NaN	NaN	0	0	Median	640450000	347230000	293220000	125370000	55220000	70153000	295960000	187690000	108270000	219120000	104320000	114800000	0	0	0	44126	3343	41539	267395;267396;267397;267398;267399;267400	358713;358714;358715;358716;358717;358718;358719;358720;358721	358720			9	
SAATDIFSYLVEFSPSMVR	0	Unmodified	2119.0296	0.029592154	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		89.504	89.504	3	0.058515	79924	160511_QHF_FH_JSI11i_3	15.422	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16766000	0	16766000	0	0	0	0	0	0	16766000	0	16766000	0	0	0	44127	2912	41540	267401	358722	358722			1	
SAATHSPMMQVASGNGDRDPLPPGWEIK	1	Acetyl (Protein N-term)	2990.4015	0.40147509	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	1	0	1			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	80.386	79.81	3	1.0306E-11	71169	160511_QHF_FH_JSI11i_3	78.202	75.553			1.3676	1.4951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3676	1.4951	NaN	1	0	Median	40546000	29377000	11169000	0	0	0	0	0	0	22118000	22118000	0	18428000	7259000	11169000	44128	732	41541	267402;267403;267404	358723;358724;358725	358724			3	
SAATLITHPFHVITLR	0	Unmodified	1776.0046	0.004638453	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	76.616	68.326	3;4	2.3016E-24	37702	160513_QHF_FH_JSI10Kac_6	155.22	145.3			0.93072	1.0405	8.9365	7	0	Median	1.2984	1.1138	5.3294	2	0	Median	0.878	1.055	4.6166	2	0	Median	1.0035	0.9727	9.5352	2	0	Median	0.88031	0.91497	NaN	1	0	Median	1637100000	911810000	725320000	250100000	116800000	133300000	918240000	574270000	343980000	354500000	159400000	195100000	114290000	61348000	52939000	44129	5717	41542	267405;267406;267407;267408;267409;267410;267411	358726;358727;358728;358729;358730;358731;358732;358733;358734;358735;358736	358734			10	
SAATSGAGSTTSGVVSGSLGSR	0	Unmodified	1895.9185	0.9184618	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.16	2.83	9	9					1			4	5	6	4	35.573	34.141	2;3	1.3789E-120	30657	160511_QHF_FH_JSI11i_1	315.06	288.28			1.0582	1.0691	18.118	14	6	Median	1.4472	1.1899	14.645	4	3	Median	0.89954	1.0647	3.4786	3	0	Median	1.0854	1.0381	28.754	4	2	Median	0.97365	1.0056	8.2404	3	1	Plateau	1382500000	658800000	723740000	373740000	154980000	218760000	370850000	199060000	171790000	386470000	178770000	207690000	251490000	125990000	125500000	44130	3290	41543	267412;267413;267414;267415;267416;267417;267418;267419;267420;267421;267422;267423;267424;267425;267426;267427;267428;267429;267430	358737;358738;358739;358740;358741;358742;358743;358744;358745;358746;358747;358748;358749;358750;358751;358752;358753;358754;358755;358756;358757;358758;358759;358760;358761;358762;358763;358764	358738			28	
SAATSLEK	1	Unmodified	805.41815	0.41814765	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0		By MS/MS			12	0					1						1			7.0735	-0.15098	2	0.046334	2197	160513_QHF_FH_JSI10Kac_2	45.081	0.73222			0.85535	1.0269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85535	1.0269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29729000	17718000	12011000	0	0	0	29729000	17718000	12011000	0	0	0	0	0	0	44131	3821	41544	267431	358765	358765			1	
SAATVLAYAMK	1	Unmodified	1124.59	0.58998078	3728	Q8TE77	SSH3	Protein phosphatase Slingshot homolog 3	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	3	0			3							1		1	1	63.777	63.182	2	0.026659	54560	160511_QHF_FH_JSI12i_3	57.032	46.801			1.1758	1.1183	21.693	3	0	Median	1.3601	1.1183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88742	0.80462	NaN	1	0	Median	1.1758	1.2116	NaN	1	0	Median	120030000	53815000	66216000	42369000	17340000	25029000	0	0	0	40475000	17536000	22939000	37187000	18939000	18248000	44132	3728	41545	267432;267433;267434	358766	358766			0	
SAAVPLINPAGLGPGGPGHLLLK	1	Unmodified	2148.2419	0.24190861	2691	Q15643	TRIP11	Thyroid receptor-interacting protein 11	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	94.477	94.155	3	5.2764E-08	81485	160511_QHF_FH_JSI12i_3	72.883	68.497			1.0331	0.88876	13.608	3	0	Median	1.0511	0.88876	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0331	0.97041	NaN	1	0	Median	0.74749	0.743	NaN	1	0	Median	69618000	33460000	36159000	10495000	4783600	5711200	0	0	0	31185000	12465000	18720000	27938000	16211000	11728000	44133	2691	41546	267435;267436;267437	358767;358768	358768			2	
SAAVSEQQQLEQK	1	Unmodified	1444.7158	0.71578623	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.702	19.4	2	1.0953E-16	16639	160511_QHF_FH_JSI10i_1	134.3	113.31			1.1606	1.1295	76.589	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68784	0.65721	NaN	1	1	Median	1.9582	1.9414	NaN	1	1	Median	24389000	9505300	14883000	0	0	0	0	0	0	9681800	6980100	2701600	14707000	2525200	12182000	44134	513	41547	267438;267439;267440;267441	358769;358770;358771;358772	358771			4	
SAAVTAGKLAR	1	Acetyl (K);Acetyl (Protein N-term)	1127.6299	0.62987176	1794	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						2	1	2	59.042	49.643	2	0.00024646	22194	160513_QHF_FH_JSI12Kac_2	83.948	60.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44135	1794	41548	267442;267443;267444;267445;267446	358773;358774;358775;358776;358777	358777	1810		5	
SAAVVNAIGLYMR	0	Oxidation (M)	1379.7231	0.72312022	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				71.676	61.084	2	0.0067513	31706	160513_QHF_FH_JSI9Kac_5	67.704	56.553			0.53716	0.44721	NaN	1	1	Median	0.53716	0.44721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3473100	2024300	1448800	3473100	2024300	1448800	0	0	0	0	0	0	0	0	0	44136	3900	41549	267447	358778	358778		2336	1	
SAAVVNAIGLYMR	0	Unmodified	1363.7282	0.7282056	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.003	73.255	2	3.6437E-06	40040	160513_QHF_FH_JSI10Kac_6	121.5	102.72			0.40387	0.48076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40387	0.48076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158140000	107890000	50246000	0	0	0	158140000	107890000	50246000	0	0	0	0	0	0	44137	3900	41549	267448	358779	358779			1	
SAAYAAR	0	Unmodified	708.35549	0.35548781	1370	P31153;Q00266	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.67	0.471	2	4								1	2	2	1	5.5454	5.1731	2	0.0012382	3038	160511_QHF_FH_JSI11i_2	122.98	36.113			0.98057	1.045	21.204	5	1	Median	1.2408	1.045	NaN	1	0	Median	0.98367	1.2005	31.569	2	1	Median	0.82822	0.85027	NaN	1	0	Median	0.98057	1.089	NaN	1	0	Median	2774100000	1357600000	1416600000	546050000	209100000	336940000	1020800000	521820000	498970000	555650000	305350000	250300000	651660000	321300000	330350000	44138	1370	41550	267449;267450;267451;267452;267453;267454	358780;358781;358782;358783	358782			4	
SACDTVDTWLDDTAK	1	Unmodified	1696.725	0.72503029	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	67.935	67.322	2	1.1931E-06	61341	160511_QHF_FH_JSI12i_1	158.01	143.59			1.3463	1.4387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3463	1.4387	NaN	1	1	Median	22531000	8849600	13682000	0	0	0	0	0	0	0	0	0	22531000	8849600	13682000	44139	2517	41551	267455	358784	358784			1	
SACGVCPGR	0	Unmodified	962.40622	0.40621953	1646	P49207	RPL34	60S ribosomal protein L34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	1	3	2	8.6491	7.3599	2	4.5526E-05	5960	160511_QHF_FH_JSI12i_1	98.523	70.305			1.0387	1.0279	26.166	8	0	Median	0.8882	0.744	1.698	2	0	Median	1.1614	1.3458	NaN	1	0	Median	0.99908	1.0038	14.853	3	0	Median	1.2365	1.3051	14.389	2	0	Median	661900000	326140000	335760000	105910000	61973000	43940000	151420000	67664000	83760000	236830000	116320000	120510000	167730000	80179000	87547000	44140	1646	41552	267456;267457;267458;267459;267460;267461;267462;267463	358785;358786;358787;358788;358789;358790;358791;358792;358793;358794	358789			10	
SADAAAGAPLPR	0	Acetyl (Protein N-term)	1137.5778	0.57783619	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	46.748	40.8	2	3.9533E-11	36530	160511_QHF_FH_JSI9i_1	63.816	53.829			0.087168	0.070542	NaN	1	0	Median	0.087168	0.070542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	230540000	219830000	10704000	230540000	219830000	10704000	0	0	0	0	0	0	0	0	0	44141	198	41553	267464;267465;267466;267467;267468;267469;267470	358795;358796;358797;358798;358799;358800;358801	358798			7	
SADAGSFSPTPGQIGGAVK	1	Unmodified	1745.8584	0.85842773	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.842	52.434	2	1.8535E-23	47638	160511_QHF_FH_JSI12i_1	133.71	116.69			1.218	1.1657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.218	1.1657	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33464000	16818000	16645000	0	0	0	12145000	12145000	0	21319000	4673300	16645000	0	0	0	44142	135	41554	267471;267472;267473;267474;267475	358802;358803;358804;358805;358806;358807	358804			6	
SADDFIDK	1	Unmodified	909.40798	0.40797689	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.856	29.169	2	0.0039287	25825	160511_QHF_FH_JSI11i_1	70.256	44.084			1.5936	1.2951	19.917	3	0	Median	1.5936	1.2951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.729	1.6749	NaN	1	0	Median	1.09	1.1317	NaN	1	0	Median	195580000	95530000	100050000	55467000	25299000	30168000	0	0	0	60457000	32156000	28301000	79653000	38075000	41578000	44143	5507	41555	267476;267477;267478;267479	358808;358809;358810;358811;358812;358813	358808			6	
SADESGQALLAAGHYASDEVR	0	Unmodified	2145.9927	0.99268938	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				59.6	58.479	3	1.8933E-05	51920	160511_QHF_FH_JSI9i_1	47.648	39.154			1.468	1.2116	NaN	1	1	Median	1.468	1.2116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46436000	19374000	27061000	46436000	19374000	27061000	0	0	0	0	0	0	0	0	0	44144	2470	41556	267480	358814	358814			1	
SADESGQALLAAGHYASDEVREK	1	Unmodified	2403.1302	0.13024549	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	57.089	56.834	3	2.7411E-35	48924	160511_QHF_FH_JSI12i_3	154.79	130.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11950000	0	11950000	0	0	0	0	0	0	0	0	0	11950000	0	11950000	44145	2470	41557	267481;267482	358815;358816;358817	358817			3	
SADEVLFTGVK	1	Unmodified	1164.6027	0.60265396	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	56.143	55.401	2	4.7043E-06	49251	160511_QHF_FH_JSI9i_1	115.78	100.17			0.68465	0.66593	31.681	3	3	Median	1.2021	0.99607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68465	0.66593	NaN	1	1	Median	0.49775	0.53315	NaN	1	1	Median	756400000	468230000	288160000	193850000	95316000	98535000	0	0	0	296520000	191130000	105390000	266030000	181790000	84240000	44146	5687	41558	267483;267484;267485	358818;358819;358820	358820			3	
SADFNPDFVFTEK	1	Unmodified	1515.6882	0.6881745	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		78.731	78.275	2	4.9953E-05	71174	160511_QHF_FH_JSI11i_1	136.96	111.02			0.93087	0.86466	13.033	3	2	Median	1.0394	0.86466	NaN	1	1	Median	0.93087	1.0804	NaN	1	0	Median	0.91862	0.85967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176610000	100940000	75672000	38192000	18578000	19614000	71180000	43052000	28128000	67238000	39308000	27930000	0	0	0	44147	4096	41559	267486;267487;267488	358821;358822;358823;358824	358821			4	
SADGAEADGSTQVTVEEPVQQPSVVDR	0	Acetyl (Protein N-term)	2812.2999	0.29988959	434	O60664	PLIN3	Perilipin-3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	63.208	62.636	2;3	6.0604E-43	56707	160511_QHF_FH_JSI10i_1	244.36	233.26			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44148	434	41560	267489;267490;267491;267492;267493;267494;267495;267496	358825;358826;358827;358828;358829;358830;358831;358832;358833	358830			9	
SADGSAPAGEGEGVTLQR	0	Unmodified	1700.7966	0.79655575	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.36	14	4	2		3	7				6	7	8	9	33.044	28.878	2;3	6.3257E-99	26318	160511_QHF_FH_JSI9i_1	326.81	303.49			0.91463	0.98057	14.195	26	2	Median	1.3213	1.0895	19.715	5	1	Median	0.86718	1.0245	9.5879	7	1	Median	1.0074	0.98143	6.4532	7	0	Median	0.84501	0.89119	9.3114	7	0	Median	10275000000	5328100000	4946800000	1875900000	867800000	1008100000	2874300000	1586900000	1287400000	2623000000	1321900000	1301100000	2901800000	1551500000	1350300000	44149	2172	41561	267497;267498;267499;267500;267501;267502;267503;267504;267505;267506;267507;267508;267509;267510;267511;267512;267513;267514;267515;267516;267517;267518;267519;267520;267521;267522;267523;267524;267525;267526	358834;358835;358836;358837;358838;358839;358840;358841;358842;358843;358844;358845;358846;358847;358848;358849;358850;358851;358852;358853;358854;358855;358856;358857;358858;358859;358860;358861;358862;358863;358864;358865;358866;358867;358868;358869;358870;358871;358872;358873;358874;358875;358876	358861			43	
SADGSPALK	1	Unmodified	844.42905	0.42904669	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					2	2	1	12.248	7.8165	2	0.0048347	5539	160513_QHF_FH_JSI12Kac_3	67.897	48.261			0.69683	0.7647	14.036	5	0	Median	NaN	NaN	NaN	0	0	Median	0.54578	0.64131	8.71	2	0	Median	0.84779	0.83252	3.8404	2	0	Median	0.69683	0.7647	NaN	1	0	Median	1002500000	515150000	487380000	0	0	0	519690000	287350000	232340000	475290000	223590000	251700000	7541900	4203200	3338700	44150	1629	41562	267527;267528;267529;267530;267531	358877;358878;358879;358880;358881	358880			5	
SADGVIVSGVK	1	Unmodified	1030.5659	0.56587452	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	37.033	32.704	2	2.1079E-05	28950	160511_QHF_FH_JSI10i_1	102.52	71.726			0.91544	1.0586	22.069	7	1	Median	1.6329	1.3348	NaN	1	0	Median	0.89223	1.0601	NaN	1	0	Median	0.91544	0.87185	17.18	3	0	Median	1.0201	1.0839	30.286	2	1	Median	643230000	313160000	330060000	129380000	53511000	75869000	174900000	98451000	76449000	163780000	74890000	88885000	175170000	86314000	88859000	44151	5437	41563	267532;267533;267534;267535;267536;267537;267538	358882;358883;358884;358885;358886;358887;358888;358889;358890;358891;358892	358887			11	
SADIALVAGGSR	0	Unmodified	1115.5935	0.59348625	2949	Q5T653	MRPL2	39S ribosomal protein L2, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	40.915	39.705	2	0.0010175	33926	160511_QHF_FH_JSI12i_2	68.355	28.354			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44152	2949	41564	267539;267540	358893;358894	358893			2	
SADTLWDIQK	1	Unmodified	1175.5823	0.58225287	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.11	6	6	3			5	7	4		8	9	6	8	58.46	51.872	2	1.8354E-56	50176	160511_QHF_FH_JSI10i_1	238.03	185.32			1.1139	1.0957	44.64	26	12	Median	1.1746	0.97157	32.54	6	3	Median	0.77892	0.91814	63.484	8	2	Median	1.2328	1.2085	33.651	5	2	Median	1.2769	1.3206	32.054	7	5	Median	43611000000	20254000000	23357000000	8542800000	3873700000	4669100000	9930500000	4769100000	5161400000	9626500000	4213800000	5412800000	15511000000	7397600000	8113400000	44153	864	41565	267541;267542;267543;267544;267545;267546;267547;267548;267549;267550;267551;267552;267553;267554;267555;267556;267557;267558;267559;267560;267561;267562;267563;267564;267565;267566;267567;267568;267569;267570;267571	358895;358896;358897;358898;358899;358900;358901;358902;358903;358904;358905;358906;358907;358908;358909;358910;358911;358912;358913;358914;358915;358916;358917;358918;358919;358920;358921;358922;358923;358924;358925;358926;358927;358928;358929;358930;358931;358932;358933;358934;358935;358936;358937;358938;358939;358940;358941;358942;358943;358944;358945;358946;358947;358948;358949	358916			54	
SADTLWDIQKDLK	2	Acetyl (K)	1573.7988	0.79878758	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.243	73.717	2	0.01903	38905	160513_QHF_FH_JSI11Kac_5	59.426	42.794			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1029100	1029100	0	0	0	0	0	0	0	1029100	1029100	0	0	0	0	44154	864	41566	267572	358950	358950	564		1	
SADTLWGIQK	1	Unmodified	1117.5768	0.57677356	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.14	4	4	5			3	3	4	1	5	6	7	6	56.672	51.578	2	1.1249E-55	44586	160511_QHF_FH_JSI11i_2	230.09	168.1			0.91385	0.96118	17.872	22	2	Median	1.1101	0.92449	17.714	5	0	Median	0.80411	0.9644	16.934	5	1	Median	0.99444	1.0012	24.117	6	1	Median	0.90058	0.96447	14.966	6	0	Median	31444000000	15752000000	15692000000	6097800000	2651800000	3446100000	8665400000	4462500000	4203000000	9278000000	4912000000	4366000000	7402200000	3725700000	3676600000	44155	761	41567	267573;267574;267575;267576;267577;267578;267579;267580;267581;267582;267583;267584;267585;267586;267587;267588;267589;267590;267591;267592;267593;267594;267595;267596	358951;358952;358953;358954;358955;358956;358957;358958;358959;358960;358961;358962;358963;358964;358965;358966;358967;358968;358969;358970;358971;358972;358973;358974;358975;358976;358977;358978;358979;358980;358981;358982;358983;358984;358985;358986;358987;358988;358989;358990;358991;358992;358993;358994;358995;358996;358997;358998;358999;359000;359001	358990			51	
SADTQSISR	0	Unmodified	963.46214	0.46213773	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	8.1107	6.4148	2	1.3623E-06	5458	160511_QHF_FH_JSI10i_1	132.84	73.86			1.0485	1.0953	4.3578	5	0	Median	1.2562	1.0121	NaN	1	0	Median	0.91815	1.0685	NaN	1	0	Median	1.1337	1.1004	NaN	1	0	Median	1.0363	1.1164	2.7074	2	0	Median	1169200000	591290000	577910000	238060000	109310000	128750000	373350000	212990000	160360000	290200000	133270000	156930000	267600000	135710000	131880000	44156	1558	41568	267597;267598;267599;267600;267601	359002;359003;359004;359005;359006;359007;359008;359009	359006			8	
SADVESVVSGTLR	0	Unmodified	1318.6729	0.67285879	1331	P30038	ALDH4A1	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		58.67	58.267	2	6.3761E-05	52836	160511_QHF_FH_JSI11i_1	74.611	55.014			0.72065	0.85818	28.249	3	3	Median	NaN	NaN	NaN	0	0	Median	0.8692	1.0122	23.348	2	2	Median	0.7124	0.68052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95850000	54100000	41751000	0	0	0	62963000	34694000	28269000	32888000	19406000	13482000	0	0	0	44157	1331	41569	267602;267603;267604;267605	359010;359011;359012;359013	359011			4	
SAEAAAEATK	1	Unmodified	947.45599	0.45598972	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	7.8803	4.5771	2	3.2482E-06	4754	160511_QHF_FH_JSI11i_1	163.94	128.06			0.60913	0.50369	38.527	7	4	Median	0.60913	0.48132	NaN	1	1	Median	0.49662	0.58115	59.515	2	1	Median	0.61622	0.59508	61.55	2	1	Median	0.59549	0.63402	32.543	2	1	Median	4407500000	3456600000	950830000	1047000000	731480000	315490000	1165900000	963230000	202660000	1156900000	970300000	186590000	1037700000	791620000	246090000	44158	2817	41570	267606;267607;267608;267609;267610;267611;267612	359014;359015;359016;359017;359018;359019	359014			6	
SAEAELQSK	1	Unmodified	961.47164	0.47163978	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	11.726	11.267	2	0.00010902	8993	160511_QHF_FH_JSI10i_1	96.331	62.159			1.0412	0.97669	13.696	3	3	Median	1.0645	0.85138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99237	0.97669	NaN	1	1	Median	1.0412	1.1196	NaN	1	1	Median	873020000	550340000	322670000	245530000	145460000	100070000	0	0	0	241040000	149360000	91680000	386460000	255530000	130930000	44159	2636	41571	267613;267614;267615;267616;267617	359020;359021;359022;359023;359024	359023			5	
SAEAFGK	1	Unmodified	708.34425	0.34425443	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	1	4	11.17	9.8111	2	0.0091338	7939	160511_QHF_FH_JSI10i_1	80.462	63.907			0.77394	0.75268	35.36	8	2	Median	1.123	0.93896	47.516	2	1	Median	0.63401	0.75945	35.99	2	0	Median	0.70345	0.68381	NaN	1	0	Median	0.76796	0.82848	46.717	3	1	Median	3663800000	1775500000	1888400000	837950000	388710000	449240000	1008200000	518320000	489850000	681030000	330980000	350050000	1136700000	537460000	599220000	44160	2380	41572	267618;267619;267620;267621;267622;267623;267624;267625;267626	359025;359026;359027;359028;359029;359030;359031;359032;359033;359034;359035;359036	359031			12	
SAEAGIAGEAQSK	1	Unmodified	1217.5888	0.58879481	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	16.096	15.628	2	6.7986E-07	12907	160511_QHF_FH_JSI9i_1	132.03	105.51			0.93306	1.1036	18.987	4	0	Linear	0.95667	0.77717	NaN	1	0	Median	0.91003	1.0695	NaN	1	0	Median	0.81553	0.77374	NaN	1	0	Median	1.0169	1.085	NaN	1	0	Median	335540000	188750000	146790000	81823000	43024000	38800000	88410000	51938000	36472000	72191000	44026000	28165000	93119000	49766000	43353000	44161	3267	41573	267627;267628;267629;267630;267631;267632	359037;359038;359039;359040;359041;359042;359043;359044;359045	359044			9	
SAEAVGVK	1	Unmodified	759.41267	0.41266834	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	8	2				2				2	4	4	2	10.252	8.7202	1;2	0.0032118	6752	160511_QHF_FH_JSI9i_1	74.255	35.449			0.95757	0.93969	25.186	12	0	Median	1.1017	0.90546	20.239	2	0	Median	0.44071	0.52735	32.236	4	0	Linear	0.9554	0.93969	23.764	4	0	Median	1.0056	1.0639	5.185	2	0	Median	2204000000	1264600000	939390000	499830000	254680000	245160000	526540000	372320000	154220000	503800000	303630000	200170000	673840000	333990000	339850000	44162	1293	41574	267633;267634;267635;267636;267637;267638;267639;267640;267641;267642;267643;267644	359046;359047;359048;359049;359050;359051;359052;359053;359054	359052			8	
SAEEEAADLPTKPTK	2	Acetyl (K)	1627.7941	0.79409613	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	51.48	42.161	3	0.0025427	19270	160513_QHF_FH_JSI12Kac_2	51.771	46.594			1.0742	1.1228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.1228	NaN	1	0	Median	3663700	1933900	1729800	0	0	0	0	0	0	0	0	0	3663700	1933900	1729800	44163	3793	41575	267645	359055;359056	359056	2940		2	
SAEEPQEK	1	Unmodified	916.41379	0.41379055	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	5.71	5				3	2				1	2	4	3	5.5358	1.3838	2	0.00041393	2908	160511_QHF_FH_JSI11i_1	103.83	49.284			1.3181	1.3506	38.728	9	1	Median	0.83571	0.68807	NaN	1	0	Median	1.5119	1.7615	14.5	2	0	Median	1.5629	1.5055	37.213	3	1	Median	0.99076	1.0653	14.268	3	0	Median	1165500000	537240000	628280000	317290000	136960000	180320000	245520000	112120000	133400000	204590000	72907000	131680000	398120000	215250000	182870000	44164	1649	41576	267646;267647;267648;267649;267650;267651;267652;267653;267654;267655	359057;359058;359059;359060;359061;359062;359063;359064;359065;359066;359067;359068;359069	359058			13	
SAEEVEEIK	1	Unmodified	1032.4975	0.49752018	3755	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	22.172	22.034	2	0.00056418	19459	160511_QHF_FH_JSI12i_1	82.749	58.595			2.0804	1.9951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0804	1.9951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36796000	10391000	26405000	0	0	0	0	0	0	36796000	10391000	26405000	0	0	0	44165	3755	41577	267656;267657;267658;267659;267660	359070;359071;359072;359073;359074	359072			5	
SAEFLLHMLK	1	Unmodified	1187.6373	0.63726532	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.7		20	20						12	13	12	13	14	78.777	76.09	2;3	9.4054E-26	39068	160513_QHF_FH_JSI11Kac_6	180.44	113.75			0.66611	0.64724	133.42	45	41	Median	0.62969	0.54512	165.28	11	9	Median	0.77195	0.85804	143.06	11	11	Median	0.59038	0.56758	125.17	12	11	Median	0.84662	0.89644	109.23	11	10	Median	18792000000	10284000000	8508400000	3303500000	2016100000	1287400000	4950100000	2909000000	2041100000	6107100000	3153400000	2953700000	4431300000	2205200000	2226100000	44166	1143	41578	267661;267662;267663;267664;267665;267666;267667;267668;267669;267670;267671;267672;267673;267674;267675;267676;267677;267678;267679;267680;267681;267682;267683;267684;267685;267686;267687;267688;267689;267690;267691;267692;267693;267694;267695;267696;267697;267698;267699;267700;267701;267702;267703;267704;267705;267706;267707;267708;267709;267710;267711;267712	359075;359076;359077;359078;359079;359080;359081;359082;359083;359084;359085;359086;359087;359088;359089;359090;359091;359092;359093;359094;359095;359096;359097;359098;359099;359100;359101;359102;359103;359104;359105;359106;359107;359108;359109;359110;359111;359112;359113;359114;359115;359116;359117;359118;359119;359120;359121;359122;359123;359124;359125;359126;359127;359128;359129;359130;359131;359132;359133;359134;359135;359136;359137;359138;359139;359140;359141;359142;359143;359144;359145;359146;359147;359148;359149;359150;359151;359152;359153;359154;359155;359156;359157;359158;359159;359160;359161;359162;359163;359164;359165;359166;359167;359168;359169;359170;359171;359172;359173;359174;359175;359176;359177;359178;359179;359180;359181;359182;359183;359184;359185;359186;359187;359188;359189;359190;359191;359192;359193	359121			119	
SAEFLLHMLK	1	Oxidation (M)	1203.6322	0.63217995	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	4.42		2	1					2	20	9	4	6	6	64.853	56.493	2;3	1.0857E-05	29215	160513_QHF_FH_JSI12Kac_6	102.52	87.38			1.0196	0.85426	76.944	25	21	Median	1.5981	1.3751	68.91	9	7	Median	0.49719	0.5859	63.904	4	4	Median	0.79758	0.76711	58.604	6	6	Median	0.98768	1.0616	113.68	6	4	Median	1298300000	639570000	658770000	527220000	186830000	340400000	198170000	131180000	66990000	323530000	192010000	131520000	249420000	129550000	119870000	44167	1143	41578	267713;267714;267715;267716;267717;267718;267719;267720;267721;267722;267723;267724;267725;267726;267727;267728;267729;267730;267731;267732;267733;267734;267735;267736;267737	359194;359195;359196;359197;359198;359199;359200;359201;359202;359203;359204;359205;359206;359207;359208;359209;359210;359211;359212;359213;359214;359215;359216;359217;359218;359219;359220	359213		780	27	
SAEFLLHMLKNAESNAELK	2	Acetyl (K)	2186.1042	0.10415408	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		93.974	84.591	3	6.8371E-05	47688	160513_QHF_FH_JSI11Kac_6	111.66	98.409			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172340000	172340000	0	0	0	0	0	0	0	172340000	172340000	0	0	0	0	44168	1143	41579	267738	359221	359221	999		1	
SAEHTLVDMVQLLFTR	0	Unmodified	1858.9611	0.96111866	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	97.231	87.957	3	7.6262E-17	48146	160513_QHF_FH_JSI12Kac_6	138.05	134.33			1.3456	1.2895	30.167	2	0	Median	1.8468	1.5961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98049	1.0418	NaN	1	0	Median	88699000	34533000	54166000	34378000	9258700	25119000	0	0	0	0	0	0	54321000	25274000	29047000	44169	3838	41580	267739;267740	359222	359222			1	
SAEHYTETALDEIR	0	Unmodified	1633.7584	0.75837933	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.862	47.879	3	3.889E-06	41911	160511_QHF_FH_JSI9i_2	99.481	90.43			0.77716	0.80424	17.698	4	3	Median	0.85486	0.73704	NaN	1	1	Median	0.70652	0.87758	NaN	1	0	Median	1.0043	1.0075	NaN	1	1	Median	0.61103	0.67886	NaN	1	1	Median	308230000	176980000	131250000	56006000	30501000	25506000	68665000	39855000	28810000	105080000	53078000	52003000	78480000	53549000	24931000	44170	4242	41581	267741;267742;267743;267744	359223;359224;359225;359226	359224			4	
SAEIDSDDTGGSAAQK	1	Unmodified	1550.6696	0.6696239	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.21	6			4	3					2	4	3	4	16.791	12.916	2;3	5.2997E-98	11055	160511_QHF_FH_JSI11i_1	263.74	251.12			1.0271	1.0122	24.61	12	1	Median	1.4601	1.1973	26.654	2	0	Median	0.87655	1.0076	18	4	0	Median	1.1224	1.1099	13.607	3	0	Median	0.93988	1.0057	44.416	3	1	Median	1131900000	555010000	576850000	263540000	111940000	151600000	336210000	191040000	145170000	242890000	107500000	135390000	289220000	144530000	144680000	44171	1400	41582	267745;267746;267747;267748;267749;267750;267751;267752;267753;267754;267755;267756;267757	359227;359228;359229;359230;359231;359232;359233;359234;359235;359236;359237;359238;359239;359240;359241;359242;359243;359244;359245	359227			17	
SAEIYPIMDK	1	Unmodified	1165.5689	0.56891099	1323	P29466	CASP1	Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		52.028	51.615	2	0.016538	46748	160511_QHF_FH_JSI11i_1	50.194	38.704			1.506	1.4702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.506	1.4702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26313000	7385100	18928000	0	0	0	0	0	0	26313000	7385100	18928000	0	0	0	44172	1323	41583	267758	359246	359246			1	
SAELPDAVGPIVQLQEK	1	Unmodified	1792.9571	0.95707914	4200	Q96PU8	QKI	Protein quaking	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				80.909	80.054	2	0.00074536	71209	160511_QHF_FH_JSI9i_1	62.89	39.654			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44173	4200	41584	267759	359247	359247			1	
SAENPPSGSVR	0	Unmodified	1099.5258	0.52580062	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	6	1					1				1		1		10.167	9.4341	2	0.0007577	6945	160511_QHF_FH_JSI9i_1	68.657	53.988			1.0672	0.86515	NaN	1	0	Median	1.0672	0.86515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50480000	29048000	21432000	50480000	29048000	21432000	0	0	0	0	0	0	0	0	0	44174	2601	41585	267760;267761	359248;359249	359249			2	
SAEPSANTTLVSETEEEGSVPAFGAAAK	1	Unmodified	2749.293	0.2930133	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.718	71.19	3	1.9405E-14	64759	160511_QHF_FH_JSI11i_1	88.278	81.845			0.89515	0.89731	14.495	4	0	Median	1.1896	0.9692	NaN	1	0	Median	0.60932	0.70752	NaN	1	0	Median	0.97711	0.95228	NaN	1	0	Median	0.82006	0.84551	NaN	1	0	Median	286590000	155490000	131110000	55025000	20880000	34146000	70266000	44896000	25370000	90272000	52927000	37345000	71030000	36785000	34245000	44175	2409	41586	267762;267763;267764;267765	359250;359251;359252;359253;359254	359250			5	
SAEPSPTVMSTSLGSNLSELDR	0	Unmodified	2277.0795	0.079455473	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			78.576	78.059	2	1.5032E-06	70801	160511_QHF_FH_JSI10i_1	95.067	73.51			1.1696	1.1149	27.429	2	2	Median	1.1297	0.91831	NaN	1	1	Median	1.2108	1.3535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23456000	11616000	11840000	10399000	4024600	6374700	13057000	7591600	5465600	0	0	0	0	0	0	44176	1640	41587	267766;267767	359255;359256	359255			2	
SAEQISDSVR	0	Unmodified	1090.5255	0.52546627	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			19.675	18.967	2	0.0070076	16282	160511_QHF_FH_JSI10i_1	61.65	47.443			0.2872	0.27853	1.0494	2	2	Median	0.34399	0.27647	NaN	1	1	Median	0.23978	0.2806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	147770000	108590000	39184000	59899000	41549000	18351000	87874000	67040000	20834000	0	0	0	0	0	0	44177	382	41588	267768;267769	359257;359258	359257			2	
SAEQISDSVRR	0	Unmodified	1246.6266	0.6265773	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			16.466	15.635	3	0.044134	12602	160511_QHF_FH_JSI10i_3	21.008	12.495			1.2353	1.5014	16.767	3	0	Median	1.9565	1.6514	NaN	1	0	Median	1.1499	1.3377	16.324	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131780000	61280000	70504000	53617000	16460000	37157000	78167000	44820000	33348000	0	0	0	0	0	0	44178	382	41589	267770;267771;267772	359259;359260;359261	359259			3	
SAEQQPSEK	1	Unmodified	1002.4618	0.46180338	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	5.28	4			2	3	3				1	4	4	3	5.058	0.077372	2	8.2484E-17	2465	160511_QHF_FH_JSI11i_1	180.44	138.99			0.92779	0.98849	14.051	12	1	Median	1.2504	1.0058	NaN	1	0	Median	0.84242	0.98856	17.133	4	1	Median	1.0804	1.0496	19.537	4	0	Median	0.92407	0.9866	0.3403	3	0	Median	5002900000	2429100000	2573800000	921930000	414760000	507170000	1326800000	652770000	674030000	1326400000	632730000	693620000	1427800000	728850000	698940000	44179	1181	41590	267773;267774;267775;267776;267777;267778;267779;267780;267781;267782;267783;267784	359262;359263;359264;359265;359266;359267;359268;359269;359270;359271;359272;359273;359274;359275;359276;359277	359262			16	
SAEVETSEGVDESEK	1	Acetyl (Protein N-term)	1636.6952	0.69516995	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	33.817	33.152	2	9.0935E-36	29160	160511_QHF_FH_JSI9i_1	169.23	161.3			5.9939	5.4897	92.9	2	2	Median	13.126	10.589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7372	2.8462	NaN	1	1	Median	71109000	25322000	45788000	20388000	2587000	17801000	0	0	0	13856000	0	13856000	36866000	22735000	14131000	44180	1355	41591	267785;267786;267787;267788;267789	359278;359279;359280;359281;359282	359282			5	
SAEVETSEGVDESEKK	2	Acetyl (Protein N-term)	1764.7901	0.79013297	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.963	27.376	2	3.2259E-10	24245	160511_QHF_FH_JSI11i_1	74.46	68.854			0.57598	0.56441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57598	0.56441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86983000	24755000	62228000	17906000	0	17906000	13490000	0	13490000	44012000	24755000	19257000	11575000	0	11575000	44181	1355	41592	267790;267791;267792;267793	359283;359284;359285;359286	359283			4	
SAEVPEAASAEEQK	1	Acetyl (Protein N-term)	1486.6787	0.67873203	1874	P56211	ARPP19	cAMP-regulated phosphoprotein 19	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.987	37.37	2	3.9418E-07	33500	160511_QHF_FH_JSI10i_1	88.187	63.395			1.1349	1.156	8.1651	4	0	Median	1.2857	1.0538	NaN	1	0	Median	1.0924	1.2866	NaN	1	0	Median	1.1788	1.1596	NaN	1	0	Median	1.0926	1.1525	NaN	1	0	Median	711430000	327020000	384410000	138400000	61685000	76720000	172210000	84552000	87654000	181800000	79681000	102120000	219020000	101100000	117920000	44182	1874	41593	267794;267795;267796;267797	359287;359288;359289;359290;359291;359292;359293	359291			7	
SAEYGSSLQSSR	0	Unmodified	1270.579	0.5789584	81	CON__Q6KB66-1;Q6KB66	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	0				By MS/MS	1	0	1												1	16.112	15.668	2	0.035095	13357	160511_QHF_FH_JSI12i_1	39.148	28.318		+	1.1085	1.1336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1085	1.1336	NaN	1	0	Median	24312000	9669200	14643000	0	0	0	0	0	0	0	0	0	24312000	9669200	14643000	44183	81	41594	267798	359294	359294			1	
SAFAPFGK	1	Unmodified	823.42284	0.4228391	2163	Q01085	TIAL1	Nucleolysin TIAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	44.118	43.021	2	0.0054736	36774	160511_QHF_FH_JSI12i_2	73.616	55.85			0.71208	0.70771	27.923	5	4	Median	1.0435	0.87386	29.824	2	2	Median	0.71208	0.8877	NaN	1	1	Median	0.67658	0.68474	NaN	1	0	Median	0.46765	0.51622	NaN	1	1	Median	422140000	226160000	195980000	107860000	50699000	57157000	88278000	49137000	39140000	141870000	79522000	62348000	84133000	46800000	37332000	44184	2163	41595	267799;267800;267801;267802;267803	359295;359296;359297;359298;359299	359295			5	
SAFEETGK	1	Unmodified	867.39741	0.39741221	4406	Q9BT09	CNPY3	Protein canopy homolog 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	11.088	10.703	2	0.0028104	8331	160511_QHF_FH_JSI11i_1	77.282	63.125			0.91038	1.0961	12.575	4	0	Linear	1.172	0.97693	NaN	1	0	Median	0.92703	1.0729	NaN	1	0	Median	0.81333	0.79405	NaN	1	0	Median	0.89402	0.94344	NaN	1	0	Median	585210000	268780000	316440000	149170000	56137000	93035000	167400000	79462000	87939000	126740000	62542000	64201000	141900000	70637000	71262000	44185	4406	41596	267804;267805;267806;267807	359300;359301	359300			2	
SAFFFWGLHELGSTSETETGEAR	0	Unmodified	2558.1714	0.17138202	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.918	79.636	3	6.2308E-147	42456	160513_QHF_FH_JSI12Kac_6	261.93	254.22			1.1468	1.0422	25.195	4	0	Median	1.1129	0.94865	NaN	1	0	Median	0.63283	0.74543	NaN	1	0	Median	1.1818	1.1449	NaN	1	0	Median	1.2884	1.3376	NaN	1	0	Median	441770000	214900000	226870000	91380000	41961000	49418000	132330000	93700000	38634000	101550000	36355000	65190000	116510000	42878000	73631000	44186	4647	41597	267808;267809;267810;267811	359302;359303;359304;359305;359306;359307;359308;359309	359306			8	
SAFLAAHIPLFLYPFLHTVSK	1	Unmodified	2371.3093	0.3092599	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	4	4	3	96.652	88.453	2;3;4	1.5012E-145	49811	160513_QHF_FH_JSI11Kac_6	263.99	246.59			0.86959	0.9026	26.201	13	5	Median	1.0252	0.8846	24.881	3	0	Plateau	0.68866	0.81364	25.756	4	2	Median	0.90762	0.85759	19.656	4	2	Median	1.1488	1.2085	25.766	2	1	Median	15243000000	8173500000	7069800000	3468600000	1850000000	1618700000	4302700000	2449800000	1852900000	5916900000	3202300000	2714600000	1555000000	671330000	883700000	44187	3854	41598	267812;267813;267814;267815;267816;267817;267818;267819;267820;267821;267822;267823;267824;267825	359310;359311;359312;359313;359314;359315;359316;359317;359318;359319;359320;359321;359322;359323;359324;359325;359326;359327;359328;359329;359330	359313			21	
SAFLCGVMK	1	Unmodified	1011.4882	0.48815825	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	54.229	53.621	2	1.4042E-06	47399	160511_QHF_FH_JSI11i_3	132.57	103.42			1.0795	1.2415	21.471	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0011	1.2415	NaN	1	0	Median	0.96935	0.93797	11.784	2	0	Median	1.3211	1.4049	4.9047	2	0	Median	960700000	464560000	496140000	0	0	0	111140000	60596000	50548000	487230000	232780000	254450000	362320000	171180000	191150000	44188	423;326	41599	267826;267827;267828;267829;267830;267831	359331;359332;359333;359334;359335	359331			5	
SAFLLQNLLVGHPEHK	1	Unmodified	1801.9839	0.98390301	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			8						6	3	3	5	3	79.955	75.641	3;4	1.0099E-16	37773	160513_QHF_FH_JSI12Kac_6	135.09	120.4			0.82447	0.86205	31.688	13	5	Median	1.1442	0.95833	50	3	1	Median	0.7095	0.83759	22.587	2	1	Median	0.926	0.86207	17.267	5	2	Median	0.82447	0.86205	32.517	3	1	Plateau	780710000	358660000	422050000	305070000	116580000	188490000	56371000	28675000	27697000	336690000	167540000	169150000	82581000	45869000	36712000	44189	5159	41600	267832;267833;267834;267835;267836;267837;267838;267839;267840;267841;267842;267843;267844;267845	359336;359337;359338;359339;359340;359341;359342;359343;359344;359345;359346;359347;359348;359349;359350;359351;359352;359353;359354;359355;359356	359356			21	
SAFLQAFLGR	0	Unmodified	1108.6029	0.60292873	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.404	77.778	2	0.0043025	43234	160513_QHF_FH_JSI10Kac_6	64.191	48.549			0.65521	0.78592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65521	0.78592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40588000	21586000	19002000	0	0	0	40588000	21586000	19002000	0	0	0	0	0	0	44190	3441	41601	267846	359357	359357			1	
SAFNDWFSGHLNFQIEHHLFPTMPR	0	Unmodified	3027.4239	0.42386551	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.492	83.771	4	1.4893E-05	47505	160513_QHF_FH_JSI10Kac_6	92.819	86.17			0.76406	0.89955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76406	0.89955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35836000	25267000	10569000	0	0	0	35836000	25267000	10569000	0	0	0	0	0	0	44191	415	41602	267847	359358	359358			1	
SAFPFSDK	1	Unmodified	897.42323	0.42323303	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.83	5.01	2	3						1		1	1	1	3	44.419	43.686	2	0.0022449	37366	160511_QHF_FH_JSI12i_2	81.548	69.643			0.83782	0.90638	7.9448	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86127	1.0085	NaN	1	0	Median	0.90256	0.90665	NaN	1	0	Median	0.81313	0.86753	6.1535	2	0	Median	328510000	176850000	151660000	0	0	0	42117000	25263000	16854000	132120000	66445000	65675000	154280000	85146000	69133000	44192	2558	41603	267848;267849;267850;267851;267852;267853	359359;359360;359361;359362;359363	359360			5	
SAFPHLQDAQVK	1	Unmodified	1339.6884	0.68844927	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	4.92		7	8					1	2	4	5	4	5	41.295	38.889	2;3	1.2126E-10	33873	160511_QHF_FH_JSI11i_3	143	124.22			0.95546	1.0372	16.256	17	3	Median	1.1281	0.93967	5.744	3	0	Median	0.89786	1.1007	11.709	5	2	Median	0.9789	0.9385	17.462	4	1	Median	0.95546	1.0524	19.911	5	0	Median	4743400000	2327000000	2416300000	148850000	59903000	88943000	813540000	430270000	383270000	1430700000	686650000	744010000	2350300000	1150200000	1200100000	44193	231	41604	267854;267855;267856;267857;267858;267859;267860;267861;267862;267863;267864;267865;267866;267867;267868;267869;267870;267871	359364;359365;359366;359367;359368;359369;359370;359371;359372;359373;359374;359375;359376;359377;359378;359379;359380;359381;359382;359383;359384;359385;359386;359387;359388;359389;359390;359391;359392;359393;359394	359367			31	
SAFQEEDFPALVSSVPK	1	Unmodified	1849.9098	0.90979459	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								2	1	1	2	86.665	86.125	2;3	0.00012586	78413	160511_QHF_FH_JSI12i_1	68.243	57.298			1.4514	1.2813	10.694	4	0	Median	1.5876	1.3556	9.7926	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3806	1.298	NaN	1	0	Median	1.0956	1.1195	NaN	1	0	Median	134190000	50455000	83731000	50536000	20285000	30251000	0	0	0	50796000	19926000	30869000	32855000	10244000	22611000	44194	3325	41605	267872;267873;267874;267875;267876;267877	359395;359396;359397;359398;359399;359400;359401	359398			7	
SAFSCFHYSTEEIK	1	Unmodified	1704.7454	0.7453718	3531	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	51.904	51.787	3	8.1034E-05	44401	160511_QHF_FH_JSI12i_3	78.932	59.857			1.0518	1.0415	31.389	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87754	0.83417	NaN	1	0	Median	1.2606	1.3003	NaN	1	0	Median	211530000	88744000	122780000	0	0	0	0	0	0	65113000	28175000	36938000	146410000	60570000	85843000	44195	3531	41606	267878;267879	359402;359403;359404;359405	359404			4	
SAFSEAALEK	1	Acetyl (Protein N-term)	1093.5292	0.52915466	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		58.502	58.08	2	0.00072149	52688	160511_QHF_FH_JSI11i_1	64.191	55.328			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44196	4189	41607	267880	359406	359406			1	
SAFSGGYYR	0	Unmodified	1006.4508	0.45084476	4023	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	25.879	25.34	2	0.012435	20975	160511_QHF_FH_JSI12i_3	47.657	21.273			1.0937	1.1056	10.338	5	1	Median	1.5162	1.2915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.0891	11.657	2	1	Median	1.0198	1.0668	5.0593	2	0	Median	264620000	119620000	145010000	41060000	16094000	24966000	0	0	0	112650000	53458000	59195000	110910000	50063000	60848000	44197	4023	41608	267881;267882;267883;267884;267885	359407;359408;359409	359409			3	
SAFSLNSYK	1	Unmodified	1015.4975	0.4974606	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	41.606	41.396	2	0.0046873	35261	160511_QHF_FH_JSI12i_3	66.27	46.634			2.875	2.9773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.875	2.9773	NaN	1	1	Median	22654000	5500200	17154000	0	0	0	0	0	0	0	0	0	22654000	5500200	17154000	44198	201	41609	267886	359410	359410			1	
SAFSNLFGGEPLSYTR	0	Unmodified	1744.842	0.84204938	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	3	3	2	2	88.147	86.981	2	2.4949E-159	73500	160511_QHF_FH_JSI10i_3	303.04	283.79			0.92336	0.96187	6.5893	9	0	Median	1.2225	1.0135	7.868	2	0	Median	0.90473	1.0604	6.4883	3	0	Median	0.99189	0.96054	0.1958	2	0	Median	0.86505	0.91975	1.522	2	0	Median	1760600000	904040000	856600000	525530000	246880000	278660000	551390000	301630000	249760000	412310000	215610000	196700000	271400000	139920000	131480000	44199	793	41610	267887;267888;267889;267890;267891;267892;267893;267894;267895;267896	359411;359412;359413;359414;359415;359416;359417;359418;359419;359420;359421;359422;359423;359424;359425;359426;359427;359428;359429;359430;359431	359415			21	
SAFSSAETTELSGK	1	Unmodified	1413.6624	0.66235368	4168	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				38.733	37.686	2	0.00044559	32901	160511_QHF_FH_JSI9i_2	69.979	61.447			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44200	4168	41611	267897	359432	359432			1	
SAFVVER	0	Unmodified	806.42865	0.42865276	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	1	4	24.908	24.042	2	0.01375	20021	160511_QHF_FH_JSI12i_2	69.198	37.133			1.2023	1.2112	46.27	7	3	Median	0.83827	0.7221	NaN	1	1	Median	0.69686	0.8437	NaN	1	0	Median	1.2023	1.2112	NaN	1	0	Median	1.343	1.4819	41.824	4	2	Median	540860000	238530000	302330000	59089000	28834000	30255000	73342000	41125000	32217000	108930000	43723000	65209000	299500000	124850000	174650000	44201	1500	41612	267898;267899;267900;267901;267902;267903;267904	359433;359434;359435;359436;359437	359433			5	
SAGACTAAAFLK	1	Unmodified	1166.5754	0.57539335	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.324	45.928	2	0.011635	39174	160511_QHF_FH_JSI12i_2	55.718	41.6			1.8714	2.1031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8714	2.1031	NaN	1	1	Median	159700000	31052000	128650000	0	0	0	0	0	0	0	0	0	159700000	31052000	128650000	44202	1313	41613	267905	359438	359438			1	
SAGAETDNAVPQGSK	1	Unmodified	1430.6638	0.66375066	4388	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					2	2	2	2	13.31	12.061	2	1.5532E-12	9846	160511_QHF_FH_JSI11i_1	191.48	134.13			0.83056	0.83038	30.309	8	6	Median	1.1194	0.92244	27.96	2	2	Median	0.61201	0.7165	30.71	2	2	Median	0.83276	0.79335	54.107	2	2	Median	0.88386	0.9422	27.715	2	0	Median	440110000	238990000	201110000	116260000	53798000	62461000	126600000	78037000	48564000	122880000	67748000	55128000	74372000	39409000	34962000	44203	4388	41614	267906;267907;267908;267909;267910;267911;267912;267913	359439;359440;359441;359442;359443;359444;359445;359446;359447	359439			9	
SAGAMLKPHAPK	2	Acetyl (K)	1248.6649	0.66487706	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.835	29.321	3	9.193E-06	16250	160513_QHF_FH_JSI11Kac_6	95.018	85.586			0.39294	0.38041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39294	0.38041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8805000	6553500	2251500	0	0	0	0	0	0	8805000	6553500	2251500	0	0	0	44204	2997	41615	267914	359448	359448	2736		1	
SAGEEEDGPVLTDEQK	1	Unmodified	1702.7534	0.75335353	3019	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	29.443	28.712	2	1.5397E-116	24844	160511_QHF_FH_JSI9i_1	274.59	255.84			1.0757	1.0102	10.839	5	1	Median	1.0768	0.88525	0.84287	2	1	Median	0.90617	1.0653	NaN	1	0	Median	1.0324	1.0102	NaN	1	0	Median	1.0772	1.124	NaN	1	0	Median	412940000	213000000	199940000	125720000	72212000	53506000	83358000	38595000	44763000	83835000	40650000	43184000	120030000	61540000	58487000	44205	3019	41616	267915;267916;267917;267918;267919	359449;359450;359451;359452;359453;359454;359455;359456	359455			8	
SAGEGEVEK	1	Unmodified	904.41379	0.41379055	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				6.4344	5.8279	2	0.014415	3632	160511_QHF_FH_JSI9i_1	55.461	31.431			0.68521	0.5595	NaN	1	1	Median	0.68521	0.5595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137000000	82362000	54637000	137000000	82362000	54637000	0	0	0	0	0	0	0	0	0	44206	3156	41617	267920	359457	359457			1	
SAGFHPSGSVLAVGTVTGR	0	Unmodified	1798.9326	0.93259572	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			56.821	55.269	2	2.7925E-05	45316	160511_QHF_FH_JSI9i_3	108.59	102.15			1.202	1.161	5.3313	2	1	Median	1.3776	1.118	NaN	1	0	Median	1.0487	1.2056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38195000	18646000	19549000	23721000	10211000	13510000	14474000	8434800	6038800	0	0	0	0	0	0	44207	737	41618	267921;267922	359458;359459	359459			2	
SAGGIGVAVSCIR	0	Unmodified	1245.65	0.64995528	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	5.15		1	2				3	4	4	2	3	4	5	56.468	48.507	2	6.2992E-20	24621	160513_QHF_FH_JSI10Kac_5	154.66	112.78			0.95947	1.0501	16.62	13	2	Median	1.3249	1.1252	9.7613	2	0	Median	0.95947	1.147	12.498	3	0	Median	0.88873	0.87592	5.5981	4	1	Median	1.0423	1.1412	16.897	4	1	Median	917800000	446920000	470880000	37314000	15908000	21406000	61922000	29249000	32673000	356340000	190030000	166310000	462220000	211730000	250490000	44208	1242	41619	267923;267924;267925;267926;267927;267928;267929;267930;267931;267932;267933;267934;267935;267936	359460;359461;359462;359463;359464;359465;359466;359467;359468;359469;359470;359471;359472;359473;359474;359475;359476;359477;359478;359479;359480	359475			21	
SAGGLMFNTGIGQHILK	1	Unmodified	1742.9138	0.91377454	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				74.609	73.153	2	2.587E-16	60180	160511_QHF_FH_JSI9i_3	117.23	102.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44209	5446	41620	267937	359481	359481			1	
SAGGSGGAGGGEQNGQEEK	1	Unmodified	1675.7034	0.70338365	2709	Q15796	SMAD2	Mothers against decapentaplegic homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					2	1	2	2	5.2438	2.6307	2	8.182E-161	2731	160511_QHF_FH_JSI12i_1	308	295.78			1.1113	1.1181	15.001	6	1	Median	1.4109	1.196	NaN	1	1	Median	0.94905	1.1299	NaN	1	0	Median	1.0744	1.0285	10.32	2	0	Median	1.2102	1.2832	22.607	2	0	Median	290260000	137640000	152630000	65970000	23898000	42073000	76686000	41387000	35298000	74767000	41307000	33459000	72842000	31043000	41799000	44210	2709	41621	267938;267939;267940;267941;267942;267943;267944	359482;359483;359484;359485;359486;359487;359488;359489;359490	359484			9	
SAGHHLIPVK	1	Unmodified	1057.6033	0.60326308	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	16.67	16.126	2;3	0.00079214	13393	160511_QHF_FH_JSI9i_3	60.518	52.873			0.87641	0.79274	18.946	4	1	Median	0.89525	0.73866	NaN	1	1	Median	0.8619	0.99225	NaN	1	0	Median	0.89117	0.85078	NaN	1	0	Median	0.6302	0.63775	NaN	1	0	Median	454620000	233120000	221500000	68327000	37784000	30543000	61108000	34743000	26365000	186400000	90325000	96075000	138780000	70270000	68514000	44211	4930	41622	267945;267946;267947;267948;267949;267950	359491;359492;359493;359494;359495;359496;359497	359495			6	
SAGLAFSLYQAMAK	1	Unmodified	1456.7384	0.73843593	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.45	6.55		1	9						10	6	6	3	5	87.868	83.475	2;3	1.4012E-96	42585	160513_QHF_FH_JSI11Kac_6	251.34	214.76			0.97899	0.96933	46.317	19	12	Median	0.80709	0.69199	32.589	5	3	Median	0.68483	0.80619	39.8	6	4	Median	1.0553	1.0209	61.358	3	1	Plateau	1.0541	1.1009	25.782	5	4	Median	6702500000	3615500000	3087000000	2037400000	969310000	1068100000	2593800000	1643800000	949940000	1268700000	639040000	629630000	802630000	363330000	439300000	44212	1706	41623	267951;267952;267953;267954;267955;267956;267957;267958;267959;267960;267961;267962;267963;267964;267965;267966;267967;267968;267969;267970	359498;359499;359500;359501;359502;359503;359504;359505;359506;359507;359508;359509;359510;359511;359512;359513;359514;359515;359516;359517;359518;359519;359520;359521;359522;359523;359524;359525;359526;359527;359528	359510			31	
SAGLAFSLYQAMAK	1	Oxidation (M)	1472.7334	0.73335055	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	3	2	1	1	73.704	66.94	2	2.2174E-67	35439	160513_QHF_FH_JSI9Kac_6	218.15	183.62			0.74362	0.72346	29.601	7	3	Median	0.82998	0.68443	20.373	3	0	Median	0.64691	0.78106	10.834	2	1	Median	0.40868	0.38828	NaN	1	1	Median	0.83668	0.87551	NaN	1	1	Median	483550000	279060000	204490000	162530000	99366000	63167000	223370000	126690000	96678000	64893000	35921000	28972000	32752000	17080000	15672000	44213	1706	41623	267971;267972;267973;267974;267975;267976;267977	359529;359530;359531;359532;359533;359534;359535;359536;359537	359535		1382	9	
SAGLFQNPK	1	Unmodified	960.50288	0.50288033	180	O14618	CCS	Copper chaperone for superoxide dismutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	28.956	28.341	2	0.00014543	24434	160511_QHF_FH_JSI11i_3	89.752	58.679			1.1913	1.1945	29.445	6	3	Median	1.4719	1.2589	NaN	1	1	Median	0.92867	1.1335	NaN	1	0	Median	1.314	1.2734	29.187	2	1	Median	0.93353	0.98093	51.848	2	1	Median	564620000	252880000	311730000	96299000	40057000	56242000	124200000	55423000	68780000	177150000	83263000	93887000	166970000	74141000	92826000	44214	180	41624	267978;267979;267980;267981;267982;267983	359538;359539;359540;359541;359542;359543;359544;359545;359546	359539			9	
SAGLPSHSSVISQHSK	1	Unmodified	1620.822	0.82198264	2109	P82909	MRPS36	28S ribosomal protein S36, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	3	1	1		22.286	18.456	3;4	2.0115E-30	14762	160511_QHF_FH_JSI9i_3	183.7	155.73			1.1841	1.0533	19.459	5	0	Median	1.2312	1.0533	7.8706	3	0	Median	1.0143	1.1812	NaN	1	0	Median	0.7934	0.7238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	340080000	166850000	173220000	126780000	59850000	66928000	121450000	62204000	59244000	91849000	44798000	47051000	0	0	0	44215	2109	41625	267984;267985;267986;267987;267988	359547;359548;359549;359550;359551;359552;359553;359554	359550			8	
SAGNAVWLNR	0	Unmodified	1086.557	0.55704117	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							3	2	1		35.169	34.113	2	5.0576E-06	29658	160511_QHF_FH_JSI9i_2	137.06	112.29			0.94546	0.88808	13.007	6	3	Median	1.4446	1.1808	14.33	3	2	Plateau	0.72913	0.87561	2.1094	2	0	Median	0.84516	0.83301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	383570000	194830000	188750000	182310000	80538000	101770000	145290000	86419000	58872000	55972000	27870000	28102000	0	0	0	44216	5549	41626	267989;267990;267991;267992;267993;267994	359555;359556;359557;359558;359559;359560	359558			6	
SAGQGEVLVYVEDPAGHQEEAK	1	Unmodified	2312.0921	0.092069069	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.849	10	4	5							4	5	6	4	56.336	55.634	2;3	1.1809E-70	50616	160511_QHF_FH_JSI12i_1	231.91	214.51			0.97093	0.98153	7.6998	16	5	Median	1.1397	0.96344	3.7361	4	2	Median	0.86017	1.0079	8.6046	3	0	Plateau	0.97583	0.9444	11.042	5	2	Median	0.94338	1.0038	1.9808	4	1	Median	3901100000	1948600000	1952500000	688580000	300600000	387980000	1233600000	667690000	565910000	1013100000	519240000	493860000	965840000	461080000	504760000	44217	1192	41627	267995;267996;267997;267998;267999;268000;268001;268002;268003;268004;268005;268006;268007;268008;268009;268010;268011;268012;268013	359561;359562;359563;359564;359565;359566;359567;359568;359569;359570;359571;359572;359573;359574;359575;359576;359577;359578;359579;359580;359581;359582;359583;359584;359585;359586;359587;359588;359589;359590;359591;359592;359593;359594;359595;359596;359597;359598;359599;359600;359601;359602;359603;359604	359579			44	
SAGQTLFSTIGAHGTLLQHSTWHTVIWK	1	Unmodified	3076.5883	0.5882883	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									6	2	2	1	1	84.218	76.356	4;5	7.2678E-59	42954	160513_QHF_FH_JSI10Kac_6	175.76	159.2			0.97749	0.87618	57.351	6	1	Median	0.97749	0.82427	0.88403	2	1	Median	0.71989	0.84491	12.892	2	0	Median	1.8279	1.7174	NaN	1	0	Median	2.9676	3.2179	NaN	1	0	Median	832530000	452420000	380120000	190820000	112830000	77994000	504970000	294320000	210650000	77676000	29769000	47907000	59060000	15494000	43566000	44218	3262	41628	268014;268015;268016;268017;268018;268019	359605;359606;359607;359608	359607			4	
SAGSALYASR	0	Unmodified	981.48796	0.48795855	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		22.475	13.046	2	0.050731	9240	160513_QHF_FH_JSI11Kac_5	37.344	21.963			0.9916	0.9748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9916	0.9748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4865800	2125700	2740200	0	0	0	0	0	0	4865800	2125700	2740200	0	0	0	44219	4124	41629	268020	359609	359609			1	
SAGSATHPGAGGR	0	Acetyl (Protein N-term)	1166.5428	0.54284767	3294	Q7Z7F0	KIAA0907	UPF0469 protein KIAA0907	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				7.6784	7.036	2	4.7509E-05	4635	160511_QHF_FH_JSI9i_1	106.29	96.703			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44220	3294	41630	268021	359610	359610			1	
SAGSIPGEHSTDNNR	0	Unmodified	1540.6866	0.68661137	2223	Q04864	REL	Proto-oncogene c-Rel	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	10.273	9.8287	3	0.0029583	7361	160511_QHF_FH_JSI11i_2	44.294	28.749			0.96043	1.0101	26.979	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81609	0.8347	NaN	1	0	Median	1.1303	1.2225	NaN	1	0	Median	38451000	17760000	20691000	0	0	0	0	0	0	20754000	10768000	9986300	17696000	6991600	10705000	44221	2223	41631	268022;268023	359611	359611			1	
SAGSLFPHHGTFEVIK	1	Unmodified	1725.8839	0.88385462	5027	Q9NVC6	MED17	Mediator of RNA polymerase II transcription subunit 17	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			59.029	57.493	4	0.034883	48043	160511_QHF_FH_JSI10i_3	14.658	10.478			1.0319	1.1462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0319	1.1462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20368000	6875600	13493000	0	0	0	20368000	6875600	13493000	0	0	0	0	0	0	44222	5027	41632	268024	359612	359612			1	
SAGVEQLMYIK	1	Unmodified	1237.6377	0.63765925	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.52	7	4					1			2	4	3	3	65.568	64.059	2	5.1685E-07	56970	160511_QHF_FH_JSI9i_1	114.97	23.703			1.011	1.0577	21.359	12	11	Median	1.2365	1.0469	31.356	2	1	Median	1.0221	1.2053	29.767	4	4	Median	1.1042	1.1326	8.3595	3	3	Plateau	0.99398	1.087	9.9376	3	3	Plateau	1224000000	589530000	634500000	161450000	65386000	96067000	370680000	200420000	170250000	395620000	184730000	210900000	296280000	138990000	157290000	44223	2529	41633	268025;268026;268027;268028;268029;268030;268031;268032;268033;268034;268035;268036	359613;359614;359615;359616;359617;359618;359619;359620;359621;359622;359623;359624;359625	359621			13	
SAGVPSR	0	Unmodified	672.35549	0.35548781	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32	4	4	1				3	3		4	4	3	4	7.0303	3.2299	2	0.004105	4132	160511_QHF_FH_JSI10i_1	100.19	58.686			1.0092	1.037	11.049	15	0	Median	1.2283	1.0165	4.3899	4	0	Median	0.87853	1.0325	15.801	4	0	Median	1.096	1.1111	5.8277	3	0	Median	0.88673	0.98107	11.279	4	0	Median	6282100000	3066300000	3215800000	1228000000	530140000	697900000	1612600000	860330000	752230000	1846500000	872400000	974140000	1595000000	803440000	791570000	44224	1281	41634	268037;268038;268039;268040;268041;268042;268043;268044;268045;268046;268047;268048;268049;268050;268051	359626;359627;359628;359629;359630;359631;359632;359633;359634;359635;359636;359637;359638;359639;359640;359641;359642;359643;359644;359645;359646	359635			21	
SAGVQCFGPTAEAAQLESSK	1	Unmodified	2036.9473	0.94731909	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	2	2	59.991	59.435	2;3	2.2205E-138	53844	160511_QHF_FH_JSI11i_1	284.25	270.84			0.85368	0.93677	42.019	8	2	Median	0.8925	0.74741	NaN	1	1	Median	0.81656	0.94148	45.826	3	1	Median	0.79653	0.76142	1.3346	2	0	Median	1.5936	1.6574	16.499	2	0	Median	868890000	440710000	428170000	63661000	35680000	27981000	265620000	140550000	125080000	310350000	171340000	139000000	229250000	93143000	136110000	44225	1205	41635	268052;268053;268054;268055;268056;268057;268058;268059	359647;359648;359649;359650;359651;359652;359653;359654;359655	359648			9	
SAGYPGTLIPYR	0	Unmodified	1293.6717	0.67173657	3153	Q6UWP2	DHRS11	Dehydrogenase/reductase SDR family member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		59.838	59.053	2	0.010138	51231	160511_QHF_FH_JSI11i_2	57.348	47.395			0.99662	0.74004	33.019	3	3	Plateau	1.065	0.91256	NaN	1	1	Median	0.99662	1.2665	NaN	1	1	Median	0.63406	0.65432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67766000	37999000	29768000	21003000	9226900	11776000	11978000	6734100	5244300	34785000	22038000	12748000	0	0	0	44226	3153	41636	268060;268061;268062	359656;359657;359658	359657			3	
SAHAGTYEVR	0	Unmodified	1089.5203	0.52032131	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	6.77		8	5					1	11	6	6	6	7	9.8382	6.3199	2;3	1.2541E-25	5947	160511_QHF_FH_JSI11i_3	209.21	172.65			1.1432	1.0443	24.087	21	3	Median	1.2541	1.0443	41.065	5	1	Median	0.69155	0.84873	8.9868	4	1	Median	1.1185	1.0709	8.0703	6	0	Median	1.0689	1.1268	15.61	6	1	Median	6458400000	2987500000	3470900000	874210000	415200000	459010000	1016000000	519240000	496720000	2428200000	1039800000	1388300000	2140000000	1013200000	1126800000	44227	1740	41637	268063;268064;268065;268066;268067;268068;268069;268070;268071;268072;268073;268074;268075;268076;268077;268078;268079;268080;268081;268082;268083;268084;268085;268086;268087	359659;359660;359661;359662;359663;359664;359665;359666;359667;359668;359669;359670;359671;359672;359673;359674;359675;359676;359677;359678;359679;359680;359681;359682;359683;359684;359685;359686;359687;359688;359689;359690;359691;359692;359693;359694;359695	359660			37	
SAHATAPVNIAGSR	0	Unmodified	1350.7004	0.70041094	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	3	4	2	21.008	20.512	2;3	8.8685E-07	17179	160511_QHF_FH_JSI11i_3	136.5	125.98			0.9359	0.88437	18.137	11	0	Median	1.3007	1.1085	1.4018	2	0	Median	0.9359	1.1556	15.546	3	0	Median	0.88637	0.84024	14.161	4	0	Median	0.7548	0.78024	9.391	2	0	Median	1048200000	546150000	502050000	203570000	94624000	108950000	316140000	174310000	141840000	333000000	162030000	170960000	195490000	115190000	80300000	44228	5474	41638	268088;268089;268090;268091;268092;268093;268094;268095;268096;268097;268098	359696;359697;359698;359699;359700;359701;359702;359703;359704;359705;359706;359707;359708	359696			13	
SAHFSTLAIK	1	Unmodified	1073.5869	0.58694431	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	34.672	34.048	2;3	0.00030699	28541	160511_QHF_FH_JSI12i_3	57.348	51.313			0.93734	0.75662	26.183	5	1	Median	0.93734	0.75662	NaN	1	0	Median	0.51635	0.57865	NaN	1	0	Median	0.661	0.62745	NaN	1	1	Median	0.99763	1.0103	5.5345	2	0	Median	595230000	320670000	274560000	85103000	48937000	36166000	133150000	78963000	54184000	56666000	34680000	21986000	320310000	158090000	162220000	44229	274	41639	268099;268100;268101;268102;268103	359709;359710;359711;359712;359713	359712			5	
SAHLQWMVVR	0	Acetyl (Protein N-term)	1267.6496	0.64956134	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.8	2	4	2					3	4	4	5	3	3	71.378	66.477	2	3.4768E-14	34352	160513_QHF_FH_JSI12Kac_6	153.05	128.27			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44230	1592	41640	268104;268105;268106;268107;268108;268109;268110;268111;268112;268113;268114;268115;268116;268117;268118	359714;359715;359716;359717;359718;359719;359720;359721;359722;359723;359724;359725;359726;359727;359728;359729;359730;359731;359732;359733;359734;359735;359736	359732			23	
SAHLQWMVVR	0	Acetyl (Protein N-term);Oxidation (M)	1283.6445	0.64447597	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.571							1	9	15	6	7	5	7	64.574	54.845	2	7.0081E-15	29261	160513_QHF_FH_JSI9Kac_6	155.84	107.88			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44231	1592	41640	268119;268120;268121;268122;268123;268124;268125;268126;268127;268128;268129;268130;268131;268132;268133;268134;268135;268136;268137;268138;268139;268140;268141;268142;268143	359737;359738;359739;359740;359741;359742;359743;359744;359745;359746;359747;359748;359749;359750;359751;359752;359753;359754;359755;359756;359757;359758;359759;359760;359761;359762;359763;359764;359765;359766;359767	359755		1259	31	
SAHTLGPTPSR	0	Unmodified	1122.5782	0.57817054	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			10.557	9.8847	2;3	0.0014004	7570	160511_QHF_FH_JSI10i_3	68.557	57.488			0.86019	0.84696	34.163	2	0	Median	1.2793	1.0784	NaN	1	0	Median	0.57838	0.6652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85397000	42726000	42671000	34358000	12957000	21401000	51039000	29769000	21270000	0	0	0	0	0	0	44232	2409	41641	268144;268145;268146	359768;359769	359768			2	
SAHVNSLAQDETK	1	Unmodified	1398.6739	0.67392142	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	12.586	12.669	2	0.0035777	9734	160511_QHF_FH_JSI12i_3	56.359	26.616			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44233	2414	41642	268147	359770	359770			1	
SAHVTVSGGTPK	1	Unmodified	1139.5935	0.59348625	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.79		6	3					1	2	2	2	4	4	11.2	8.6763	2;3	2.6194E-05	7008	160511_QHF_FH_JSI12i_3	69.864	65.941			0.98226	0.84303	36.093	11	4	Median	1.0559	0.89354	8.2282	2	0	Median	0.55396	0.61167	41.456	2	1	Median	0.83549	0.85134	41.318	4	3	Median	1.4074	1.4398	31.936	3	0	Plateau	652760000	343400000	309360000	67821000	35011000	32810000	27821000	17079000	10743000	102530000	53079000	49456000	454580000	238230000	216360000	44234	4525	41643	268148;268149;268150;268151;268152;268153;268154;268155;268156;268157;268158;268159	359771;359772;359773;359774;359775;359776;359777;359778;359779;359780;359781;359782	359781			12	
SAIDHAGNYIGISLR	0	Unmodified	1585.8213	0.82125436	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.649	59.515	3	3.5622E-05	51246	160511_QHF_FH_JSI12i_3	94.544	74.804			0.8755	0.85246	14.334	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0062	0.94339	NaN	1	0	Median	0.76175	0.77029	NaN	1	0	Median	102460000	54155000	48304000	0	0	0	0	0	0	45435000	21718000	23717000	57023000	32437000	24587000	44235	486	41644	268160;268161	359783;359784;359785;359786	359786			4	
SAIDLEEMASGLNK	1	Unmodified	1476.713	0.71300904	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								2	1	1	1	76.695	76.023	2;3	2.1513E-24	68858	160511_QHF_FH_JSI10i_1	220.25	194.31			0.73022	0.84662	43.307	5	5	Median	1.0339	0.88846	53.442	2	2	Median	0.73022	0.84662	NaN	1	1	Median	1.022	0.98672	NaN	1	1	Median	0.40426	0.42493	NaN	1	1	Median	270670000	149220000	121450000	78035000	40183000	37852000	101680000	59675000	42005000	77468000	39061000	38407000	13484000	10303000	3180900	44236	1929	41645	268162;268163;268164;268165;268166	359787;359788;359789;359790;359791	359789			5	
SAIDLTPIVVEDK	1	Unmodified	1398.7606	0.76061116	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		74.515	74.044	2	5.1589E-11	67068	160511_QHF_FH_JSI10i_1	194.5	156.42			2.9873	3.6446	12.013	3	3	Plateau	5.4843	4.5718	NaN	1	1	Median	2.9873	3.6446	NaN	1	1	Median	3.9316	3.8098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	890320000	207040000	683280000	330630000	56750000	273880000	283960000	83734000	200230000	275730000	66555000	209170000	0	0	0	44237	2578	41646	268167;268168;268169	359792;359793;359794	359793			3	
SAIDLTPIVVEDKEEK	2	Unmodified	1784.9408	0.94076037	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	65.576	64.829	3	1.8563E-05	56584	160511_QHF_FH_JSI11i_2	104.93	87.653			0.80125	0.86194	19.474	4	4	Median	NaN	NaN	NaN	0	0	Median	0.79735	0.9607	NaN	1	1	Median	0.74128	0.73062	NaN	1	1	Median	0.88828	0.92735	25.686	2	2	Median	238250000	120060000	118190000	0	0	0	75169000	32082000	43087000	81008000	47284000	33724000	82069000	40695000	41375000	44238	2578	41647	268170;268171;268172;268173	359795;359796;359797;359798	359796			4	
SAIELDTPSMTAEQVAAIEQSVNEK	1	Unmodified	2660.2851	0.28509115	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	98.896	98.754	3	6.7904E-22	89265	160511_QHF_FH_JSI10i_1	137.72	125.04			0.80168	0.89961	6.7106	4	0	Linear	1.2306	0.9837	NaN	1	0	Median	0.77375	0.91836	NaN	1	0	Median	0.8761	0.83954	NaN	1	0	Median	0.85189	0.88125	NaN	1	0	Median	153280000	83780000	69498000	11347000	5720400	5626400	53346000	30136000	23210000	37151000	19639000	17512000	51434000	28285000	23149000	44239	4417	41648	268174;268175;268176;268177	359799;359800;359801;359802;359803	359803			5	
SAIFHFESAVEK	1	Unmodified	1363.6772	0.67721588	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.36		1	6						1	2	3	2	1	55.438	53.54	2;3	2.248E-05	47202	160511_QHF_FH_JSI11i_3	78.763	65.626			0.9011	0.9739	29.134	7	0	Median	1.1771	0.99689	45.835	2	0	Median	0.65757	0.78209	42.207	2	0	Median	0.94509	0.88921	23.292	2	0	Median	0.9381	0.9739	NaN	1	0	Median	382590000	172030000	210560000	30028000	11718000	18310000	80364000	47080000	33285000	156680000	71095000	85582000	115520000	42137000	73385000	44240	942	41649	268178;268179;268180;268181;268182;268183;268184;268185	359804;359805;359806;359807;359808;359809;359810;359811	359804			8	
SAIGEGMTRK	1	Unmodified	1048.5335	0.53352853	1189	P21281;P15313	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	yes	no	0	0	0	1	By MS/MS				3	0			1							1				12.244	11.447	2	0.00023731	8871	160511_QHF_FH_JSI9i_3	96.331	18.657			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44241	1189	41650	268186	359812	359812			1	
SAIIETYVMDSR	0	Unmodified	1383.6704	0.67041595	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		63.524	62.751	2	0.00036722	54706	160511_QHF_FH_JSI11i_2	89.171	69.181			0.55303	0.57693	16.24	3	3	Plateau	0.90978	0.77625	NaN	1	1	Median	0.48838	0.5969	NaN	1	1	Median	0.55303	0.57693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85763000	54688000	31074000	21441000	12086000	9354600	27224000	18991000	8233200	37098000	23611000	13486000	0	0	0	44242	2841	41651	268187;268188;268189	359813;359814;359815	359814			3	
SAILGLPQPLLELNDSPVFK	1	Unmodified	2150.1987	0.19870639	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	102.07	101.95	2;3	4.5125E-11	87868	160511_QHF_FH_JSI12i_2	135.58	123.22			0.8413	0.88114	8.6032	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8413	1.017	NaN	1	0	Median	0.97478	0.97468	NaN	1	0	Median	0.78252	0.86174	NaN	1	0	Median	200110000	97739000	102370000	0	0	0	57308000	24606000	32702000	67461000	32114000	35347000	75342000	41020000	34322000	44243	4831	41652	268190;268191;268192	359816;359817;359818	359817			2	
SAILQENSTLSASNK	1	Unmodified	1561.7948	0.79476484	5728	Q9Y6I4	USP3	Ubiquitin carboxyl-terminal hydrolase 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	38.958	37.756	2	2.8403E-08	32170	160511_QHF_FH_JSI12i_2	100.55	65.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44244	5728	41653	268193;268194	359819;359820	359819			2	
SAILYVK	1	Unmodified	792.47454	0.47454032	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.38		4					1	3		1	3	2	2	41.237	35.665	2	0.025897	20143	160513_QHF_FH_JSI11Kac_5	64.803	47.876			1.241	1.2635	23.919	8	1	Median	1.8434	1.5395	NaN	1	0	Median	0.99464	1.1923	22.572	3	1	Plateau	1.2724	1.2635	2.521	2	0	Median	1.3063	1.4199	4.2018	2	0	Median	349470000	155420000	194060000	69271000	24448000	44823000	82759000	42394000	40365000	121350000	51676000	69671000	76097000	36901000	39196000	44245	859	41654	268195;268196;268197;268198;268199;268200;268201;268202	359821;359822;359823;359824	359823			4	
SAINEVVTR	0	Unmodified	987.53491	0.53490874	2035	P62899	RPL31	60S ribosomal protein L31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.06	4	7	5			3	3	4	1	6	6	8	7	30.002	25.254	2	5.1291E-11	21309	160511_QHF_FH_JSI11i_2	140.75	64.899			0.94422	0.96434	14.195	23	8	Median	1.1987	1.0077	3.5511	5	2	Median	0.78957	0.93093	18.166	6	1	Median	0.98621	1.0083	12.52	6	3	Median	0.83441	0.91389	16.604	6	2	Median	14026000000	7151300000	6875200000	2365900000	1075900000	1290000000	3309100000	1762800000	1546300000	4787000000	2341000000	2445900000	3564500000	1971600000	1592900000	44246	2035	41655	268203;268204;268205;268206;268207;268208;268209;268210;268211;268212;268213;268214;268215;268216;268217;268218;268219;268220;268221;268222;268223;268224;268225;268226;268227;268228;268229	359825;359826;359827;359828;359829;359830;359831;359832;359833;359834;359835;359836;359837;359838;359839;359840;359841;359842;359843;359844;359845;359846;359847;359848;359849;359850;359851;359852;359853;359854;359855;359856;359857;359858;359859;359860;359861;359862;359863;359864;359865	359849			41	
SAIPAEESDQLLIRPLGAGQEVGR	0	Acetyl (Protein N-term)	2547.3293	0.32927965	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	89.379	88.999	2;3	1.3617E-06	80966	160511_QHF_FH_JSI12i_1	41.763	34.229			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44247	5366	41656	268230;268231;268232;268233;268234;268235;268236	359866;359867;359868;359869;359870;359871;359872;359873	359869			8	
SAIPHPLIMGVIR	0	Unmodified	1402.8119	0.81187565	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	2	3	2	73.854	68.236	2;3	1.8557E-05	58769	160511_QHF_FH_JSI10i_3	99.539	88.438			0.96721	0.98787	16.027	8	1	Median	1.3907	1.1934	NaN	1	0	Median	0.87084	0.99679	13.545	2	0	Median	0.98004	0.95199	13.833	3	0	Median	0.95393	0.99535	26.352	2	1	Median	812080000	413000000	399080000	105330000	40488000	64844000	343640000	180110000	163530000	257960000	136860000	121100000	105150000	55544000	49603000	44248	1943	41657	268237;268238;268239;268240;268241;268242;268243;268244	359874;359875;359876;359877;359878;359879;359880;359881;359882;359883;359884	359875			11	
SAIPHPLIMGVIR	0	Oxidation (M)	1418.8068	0.80679027	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	67.696	58.653	3	0.0070134	31025	160513_QHF_FH_JSI9Kac_6	40.373	31.644			0.97567	0.96404	6.5619	4	0	Median	1.0866	0.94112	NaN	1	0	Median	0.72652	0.86956	NaN	1	0	Median	1.0569	1.0079	NaN	1	0	Median	0.90065	0.98752	NaN	1	0	Median	58631000	28580000	30051000	13416000	5898200	7518100	19774000	10401000	9372400	17250000	7881500	9368800	8190900	4398900	3792000	44249	1943	41657	268245;268246;268247;268248	359885;359886	359885		1610	1	
SAIQNLHSFDPFADASK	1	Acetyl (Protein N-term)	1888.8955	0.89554151	1522	P41567	EIF1	Eukaryotic translation initiation factor 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	5	2	1	91.922	91.554	2;3	5.3339E-210	81446	160511_QHF_FH_JSI9i_1	117.07	87.265			0.93328	0.91531	94.158	11	3	Median	1.0409	0.83818	11.848	3	0	Median	0.72136	0.83827	147.85	5	3	Median	0.98727	0.97265	8.5918	2	0	Median	0.93328	0.99102	NaN	1	0	Median	1730600000	890950000	839620000	376420000	182920000	193490000	489880000	274270000	215610000	533460000	260590000	272870000	330820000	173170000	157640000	44250	1522	41658	268249;268250;268251;268252;268253;268254;268255;268256;268257;268258;268259	359887;359888;359889;359890;359891;359892;359893;359894;359895;359896;359897;359898;359899;359900;359901;359902	359897			16	
SAISAAK	1	Unmodified	646.36499	0.36498987	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	5.4036	5.0693	2	0.042889	2808	160511_QHF_FH_JSI11i_2	45.952	3.4775			0.94624	1.0328	23.596	5	0	Median	1.2501	1.0634	NaN	1	0	Median	0.94624	1.1874	NaN	1	0	Median	0.98265	0.97274	8.4705	2	0	Median	0.57824	0.64333	NaN	1	0	Median	753850000	345710000	408140000	168330000	62980000	105350000	106180000	54334000	51846000	339520000	150940000	188580000	139820000	77455000	62368000	44251	4525	41659	268260;268261;268262;268263;268264	359903	359903			1	
SAITPGGLR	0	Unmodified	870.49232	0.49231565	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	5.88		4	1			2	2	4	3	3	3	6	4	31.366	24.955	2	3.2436E-05	21822	160511_QHF_FH_JSI10i_2	101.33	44.15			1.0812	1.1176	11.351	15	2	Median	1.3647	1.1617	3.2562	3	0	Plateau	0.82208	1.0111	12.313	3	1	Plateau	1.1403	1.1176	15.815	5	1	Median	1.0221	1.1145	10.563	4	0	Median	4600200000	2229000000	2371100000	965030000	398860000	566180000	885210000	481020000	404190000	2033900000	969850000	1064000000	716050000	379290000	336770000	44252	1415	41660	268265;268266;268267;268268;268269;268270;268271;268272;268273;268274;268275;268276;268277;268278;268279;268280	359904;359905;359906;359907;359908;359909;359910;359911;359912;359913;359914;359915;359916;359917;359918;359919;359920;359921;359922;359923;359924;359925;359926	359922			23	
SAIVHLINYQDDAELATR	0	Unmodified	2028.0276	0.027618319	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				68.601	67.113	2;3	5.3695E-12	55072	160511_QHF_FH_JSI9i_3	143.46	132.52			1.2111	0.96724	NaN	1	0	Median	1.2111	0.96724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127290000	58237000	69055000	127290000	58237000	69055000	0	0	0	0	0	0	0	0	0	44253	1065	41661	268281;268282	359927;359928;359929	359928			3	
SAIYQLEEEYENLLK	1	Unmodified	1840.9095	0.90946024	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.42	101.31	2	2.1815E-137	87156	160511_QHF_FH_JSI12i_2	289.75	237.83			0.82987	0.88285	20.927	4	2	Median	0.75638	0.64591	NaN	1	1	Median	0.63238	0.78656	NaN	1	1	Median	0.97564	1.001	NaN	1	0	Median	0.91051	0.99092	NaN	1	0	Median	779830000	440810000	339020000	151320000	89306000	62016000	175810000	111910000	63901000	224690000	118000000	106690000	228010000	121590000	106410000	44254	1085	41662	268283;268284;268285;268286	359930;359931;359932;359933	359930			4	
SAKPGDDVR	1	Unmodified	943.47231	0.47230849	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	1	3	3	5.1586	5.003	2;3	0.0052633	2792	160511_QHF_FH_JSI12i_3	74.464	31.341			0.97296	0.96233	24.443	8	0	Median	1.8457	1.5735	NaN	1	0	Median	0.7843	0.9531	NaN	1	0	Median	1.343	1.3545	30.489	3	0	Plateau	0.95202	0.97165	13.698	3	0	Median	1205100000	567040000	638030000	205740000	69427000	136310000	195700000	106580000	89122000	376350000	152900000	223450000	427280000	238130000	189140000	44255	1865	41663	268287;268288;268289;268290;268291;268292;268293;268294	359934;359935;359936;359937;359938;359939	359938			6	
SAKPGDDVR	1	Acetyl (K)	985.48287	0.48287317	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0.816					3	3	3				3	3	3	16.689	9.0912	2	4.678E-07	7177	160513_QHF_FH_JSI11Kac_3	138.98	110.8			0.78345	0.86555	15.941	9	0	Median	NaN	NaN	NaN	0	0	Median	0.76014	0.9242	7.2645	3	0	Median	0.87606	0.86518	22.784	3	0	Median	0.87691	0.95923	10.394	3	0	Median	258060000	144290000	113770000	0	0	0	91879000	49230000	42649000	90777000	55566000	35212000	75408000	39494000	35914000	44256	1865	41663	268295;268296;268297;268298;268299;268300;268301;268302;268303	359940;359941;359942;359943;359944;359945;359946;359947;359948;359949;359950;359951;359952	359943	1880		13	
SAKPGDDVRER	1	Unmodified	1228.616	0.61601261	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			4							2	2			5.6375	5.1279	2;3	0.011518	3171	160511_QHF_FH_JSI9i_3	53.967	41.753			0.97337	0.94463	32.814	4	0	Median	1.6128	1.3151	28.896	2	0	Median	0.70606	0.80765	4.2537	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	338170000	167170000	171010000	166240000	72562000	93682000	171930000	94603000	77324000	0	0	0	0	0	0	44257	1865	41664	268304;268305;268306;268307	359953;359954;359955;359956	359956			2	
SAKPGDDVRER	1	Acetyl (K)	1270.6266	0.6265773	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.493							5	7		1	4	3	4	16.523	7.5091	2;3	3.4071E-18	6838	160513_QHF_FH_JSI12Kac_4	164.64	128.22			0.9792	1.0596	7.0131	12	0	Median	1.22	1.0442	NaN	1	0	Median	0.86657	1.0335	7.4597	4	0	Median	0.91749	0.91159	12.558	3	0	Plateau	0.98562	1.0682	0.58881	4	0	Linear	281810000	151230000	130580000	20062000	8968900	11094000	117240000	68277000	48967000	33708000	14910000	18798000	110800000	59074000	51722000	44258	1865	41664	268308;268309;268310;268311;268312;268313;268314;268315;268316;268317;268318;268319	359957;359958;359959;359960;359961;359962;359963;359964;359965;359966;359967;359968;359969;359970	359965	1880		14	
SAKPPAGGK	2	Unmodified	811.4552	0.45520186	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			4.5688	4.0806	3	0.026336	2056	160511_QHF_FH_JSI9i_3	38.303	24.146			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	435290000	0	435290000	202040000	0	202040000	233250000	0	233250000	0	0	0	0	0	0	44259	3341	41665	268320;268321	359971;359972	359972			2	
SAKPTKPAASDLPVPAEGVR	2	Unmodified	1990.0847	0.084739267	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			39.544	38.042	3	0.0011123	31041	160511_QHF_FH_JSI9i_3	62.966	59.186			0.80774	0.78111	5.2587	2	0	Median	0.92939	0.7526	NaN	1	0	Median	0.70202	0.8107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76915000	43126000	33789000	43539000	20739000	22800000	33376000	22386000	10989000	0	0	0	0	0	0	44260	2233	41666	268322;268323	359973;359974	359974			0	
SALAAAQTQVAEYK	1	Unmodified	1449.7464	0.74635808	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.5	6.02	3	1					2				2	2	2	48.228	44.18	2	8.459E-05	39819	160511_QHF_FH_JSI10i_1	114.02	96.993			0.85047	1.0251	25.934	6	2	Linear	NaN	NaN	NaN	0	0	Median	0.70242	0.82271	42.545	2	1	Median	0.84161	0.8056	37.016	2	1	Median	0.85047	0.91378	0.60771	2	0	Median	372280000	218150000	154130000	0	0	0	116180000	62560000	53616000	100350000	57197000	43155000	155750000	98394000	57356000	44261	138	41667	268324;268325;268326;268327;268328;268329	359975;359976;359977;359978;359979;359980	359979			5	
SALALAIK	1	Unmodified	785.50109	0.50108942	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.53	2	5	5				1	5	4	4	6	7	5	52.073	47.03	1;2	0.00028113	39926	160511_QHF_FH_JSI12i_3	113.7	64.337			0.96674	1.0082	36.436	22	6	Median	0.9637	0.79651	37.323	4	1	Median	0.88933	1.0628	31.051	6	2	Median	1.1337	1.0601	22.546	7	2	Median	0.95731	1.0027	59.829	5	1	Median	8787100000	4890600000	3896600000	1463700000	763490000	700220000	1842500000	1075100000	767430000	2648700000	1495900000	1152800000	2832200000	1556100000	1276100000	44262	1267	41668	268330;268331;268332;268333;268334;268335;268336;268337;268338;268339;268340;268341;268342;268343;268344;268345;268346;268347;268348;268349;268350;268351	359981;359982;359983;359984;359985;359986;359987;359988;359989;359990;359991;359992;359993;359994;359995;359996;359997;359998;359999;360000;360001;360002;360003;360004;360005;360006;360007;360008;360009;360010;360011;360012;360013	360009			31	
SALAPGVR	0	Unmodified	769.44464	0.44463717	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	17.091	16.539	2	0.0026336	13968	160511_QHF_FH_JSI10i_2	78.616	37.113			1.2205	1.0976	19.694	5	2	Median	1.2842	1.0976	NaN	1	1	Median	0.85377	1.0625	NaN	1	0	Median	1.101	1.0658	32.871	2	1	Median	1.2205	1.365	NaN	1	0	Median	610590000	301760000	308830000	111710000	64362000	47352000	109320000	61361000	47960000	270740000	123790000	146950000	118820000	52251000	66569000	44263	5644	41669	268352;268353;268354;268355;268356	360014;360015;360016;360017;360018;360019;360020;360021	360021			8	
SALAPNLLTSGK	1	Unmodified	1170.6608	0.66083754	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		54.316	53.493	2	0.00090278	47269	160511_QHF_FH_JSI10i_2	77.64	43.108			0.86279	0.76209	29.694	3	3	Median	0.8918	0.76209	NaN	1	1	Median	0.40345	0.49193	NaN	1	1	Median	0.86279	0.86679	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144320000	87281000	57040000	37752000	20668000	17084000	37887000	26336000	11552000	68682000	40278000	28404000	0	0	0	44264	293	41670	268357;268358;268359	360022;360023;360024	360024			3	
SALASVIMGLSPILGK	1	Unmodified	1555.9008	0.90075023	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	99.422	95.177	2;3	3.5495E-66	91261	160511_QHF_FH_JSI11i_3	283.43	257.99			0.90867	0.83759	18.257	16	1	Median	1.0477	0.86134	5.8975	4	0	Median	0.68441	0.79479	5.8399	4	0	Median	0.95318	0.91621	5.7608	4	1	Median	0.70812	0.71787	31.194	4	0	Median	10385000000	5713100000	4671400000	1887500000	917030000	970450000	3690500000	2213400000	1477100000	2559500000	1261900000	1297500000	2247100000	1320800000	926290000	44265	1345	41671	268360;268361;268362;268363;268364;268365;268366;268367;268368;268369;268370;268371;268372;268373;268374;268375	360025;360026;360027;360028;360029;360030;360031;360032;360033;360034;360035;360036;360037;360038;360039;360040;360041;360042;360043;360044;360045;360046;360047;360048;360049	360025			20	
SALASVIMGLSPILGK	1	Oxidation (M)	1571.8957	0.89566486	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			4						2	3	2	1		100.11	98.867	2;3	1.9463E-98	82415	160511_QHF_FH_JSI9i_3	266.69	242.84			1.1778	0.96009	21.28	5	1	Median	1.2021	0.97666	2.4198	2	0	Median	0.68027	0.78009	14.418	2	0	Median	1.3657	1.2631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	822680000	398650000	424030000	510050000	235240000	274800000	222600000	132650000	89943000	90034000	30749000	59285000	0	0	0	44266	1345	41671	268376;268377;268378;268379;268380;268381	360050;360051;360052;360053;360054;360055;360056;360057	360052		987	7	
SALASVIMGLSTILGK	1	Unmodified	1559.8957	0.89566486	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	3	3	2	1	100.61	93.852	2;3	4.9774E-53	52310	160513_QHF_FH_JSI9Kac_6	234.41	173.98			0.76933	0.73823	20.473	7	3	Median	1.0859	0.92995	11.297	3	1	Median	0.46065	0.54203	15.579	3	2	Plateau	0.76933	0.73346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	845210000	428730000	416490000	271460000	107030000	164430000	471490000	308860000	162630000	102260000	12838000	89427000	0	0	0	44267	1346	41672	268382;268383;268384;268385;268386;268387;268388;268389;268390	360058;360059;360060;360061;360062;360063;360064;360065;360066;360067;360068	360061			11	
SALDNGPQIAYVR	0	Unmodified	1402.7205	0.72047768	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	51.572	50.18	2	0.0010609	43327	160511_QHF_FH_JSI11i_2	63.415	36.666			1.6639	1.7815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6639	1.7815	NaN	1	1	Median	23058000	7298300	15760000	0	0	0	0	0	0	0	0	0	23058000	7298300	15760000	44268	4133	41673	268391;268392	360069;360070	360070			2	
SALEKSMHLGR	1	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1327.6554	0.65543458	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	51.614	41.114	2	0.00017239	21297	160513_QHF_FH_JSI12Kac_5	85.377	66.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44269	5650	41674	268393;268394;268395;268396;268397	360071;360072;360073;360074;360075	360074	3518	2723	5	
SALEKSMHLGR	1	Acetyl (K);Acetyl (Protein N-term)	1311.6605	0.66051996	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	70.934	60.236	2	0.00034785	30191	160513_QHF_FH_JSI10Kac_5	79.659	50.186			2.3699	2.5673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3699	2.5673	NaN	1	0	Median	4640100	827530	3812600	0	0	0	0	0	0	0	0	0	4640100	827530	3812600	44270	5650	41674	268398;268399;268400;268401;268402;268403	360076;360077;360078;360079;360080;360081	360081	3518		6	
SALEQMRK	1	Unmodified	961.5015	0.50150012	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			11.56	10.824	2	0.027703	8313	160511_QHF_FH_JSI9i_3	42.287	23.622			0.67383	0.66459	26.573	2	0	Median	0.66273	0.55074	NaN	1	0	Median	0.68512	0.80197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73545000	41130000	32414000	46245000	23406000	22839000	27300000	17724000	9575600	0	0	0	0	0	0	44271	2517	41675	268404;268405	360082	360082			1	
SALFAGNEWR	0	Unmodified	1149.5567	0.55670682	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	54.096	53.549	2	0.00045736	45824	160511_QHF_FH_JSI12i_3	73.985	51.245			1.1457	0.95759	13.623	4	1	Linear	1.1534	0.9816	NaN	1	0	Median	0.84495	1.047	NaN	1	0	Median	1.2794	1.2158	NaN	1	1	Median	1.1381	1.3224	NaN	1	0	Median	362290000	158830000	203460000	82369000	33864000	48505000	78184000	36553000	41631000	129420000	54994000	74429000	72313000	33416000	38897000	44272	2494	41676	268406;268407;268408;268409	360083;360084;360085;360086	360086			4	
SALFAQLNQGEAITK	1	Unmodified	1589.8413	0.8413211	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	3.99		5	3					1		1	3	4	1	71.542	69.769	2;3	6.8741E-40	57485	160511_QHF_FH_JSI12i_3	202.29	168.33			0.8921	0.9736	103.26	9	4	Median	0.39596	0.34783	NaN	1	1	Median	0.80264	0.98083	40.326	3	1	Median	1.3923	1.3006	130.66	4	2	Median	0.97092	0.9736	NaN	1	0	Median	431560000	223600000	207960000	30448000	21368000	9079300	107590000	65137000	42452000	187840000	89331000	98504000	105690000	47761000	57930000	44273	1491	41677	268410;268411;268412;268413;268414;268415;268416;268417;268418	360087;360088;360089;360090;360091;360092;360093;360094;360095;360096;360097;360098	360098			10	
SALFNLALLYSQTAK	1	Unmodified	1638.8981	0.8981077	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	92.637	84.64	2;3	2.3433E-32	49284	160513_QHF_FH_JSI10Kac_6	161.87	116.51			1.1925	1.3163	67.356	6	4	Median	2.1863	1.8815	118.56	2	2	Median	0.84169	0.97134	29.331	2	1	Median	2.6893	2.5864	NaN	1	1	Median	1.3602	1.4496	NaN	1	0	Median	520000000	176130000	343860000	183080000	59159000	123920000	171370000	89024000	82343000	121040000	12809000	108230000	44509000	15141000	29368000	44274	3195	41678	268419;268420;268421;268422;268423;268424	360099;360100;360101;360102;360103;360104	360103			6	
SALFSESQK	1	Unmodified	995.49238	0.49237523	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	25.404	24.145	2	0.0069596	20979	160511_QHF_FH_JSI10i_2	54.982	35.195			1.067	1.148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.067	1.148	NaN	1	1	Median	31828000	16826000	15002000	0	0	0	0	0	0	0	0	0	31828000	16826000	15002000	44275	4143	41679	268425;268426	360105;360106	360106			2	
SALGFIK	1	Unmodified	734.43268	0.4326755	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.15		3	6				2	3	2	4	2	5	5	41.545	37.049	2	0.017885	39689	160511_QHF_FH_JSI11i_3	60.788	37.769			0.98481	1.0002	25.594	16	2	Median	1.3994	1.2203	22.588	4	1	Median	0.86317	1.0461	14.673	2	0	Median	1.0584	1.0503	14.304	5	0	Median	0.73033	0.77544	33.731	5	1	Median	1828100000	1008800000	819360000	330420000	143060000	187350000	73901000	44062000	29839000	605520000	290170000	315350000	818270000	531450000	286820000	44276	2904	41680	268427;268428;268429;268430;268431;268432;268433;268434;268435;268436;268437;268438;268439;268440;268441;268442	360107;360108;360109;360110;360111;360112;360113;360114;360115;360116;360117;360118;360119;360120;360121;360122;360123	360107			17	
SALGPGVPHIINTK	1	Unmodified	1402.7932	0.79324869	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	3	3	3	51.412	50.659	2;3	7.9861E-10	43295	160511_QHF_FH_JSI12i_3	106.49	80.373			1.0416	0.96261	22.521	9	6	Median	1.4133	1.1409	24.027	2	1	Median	1.0527	1.2232	3.7242	2	2	Median	1.0598	1.0025	17.687	3	2	Plateau	0.79732	0.79477	12.372	2	1	Median	901850000	399520000	502330000	179400000	76136000	103270000	200170000	96431000	103740000	267860000	111500000	156350000	254420000	115450000	138970000	44277	4604	41681	268443;268444;268445;268446;268447;268448;268449;268450;268451;268452;268453	360124;360125;360126;360127;360128;360129;360130;360131;360132;360133;360134	360134			11	
SALGPNVTK	1	Unmodified	885.49198	0.4919813	3754	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	2	1	19.269	18.624	2	0.0045543	15889	160511_QHF_FH_JSI10i_2	56.729	15.7			1.0289	1.0108	12.823	8	1	Median	1.2152	1.0469	18.063	3	1	Median	0.83759	1.0128	11.66	2	0	Median	0.96564	0.96626	1.4009	2	0	Median	1.1451	1.2133	NaN	1	0	Median	595940000	278700000	317230000	150390000	65695000	84692000	181600000	88406000	93195000	204080000	97358000	106720000	59871000	27244000	32627000	44278	3754	41682	268454;268455;268456;268457;268458;268459;268460;268461	360135;360136;360137;360138;360139;360140;360141	360141			7	
SALLALGLK	1	Unmodified	884.5695	0.56950333	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.02		4	4					2		4	2	3	1	68.899	67.013	2	8.573E-07	57767	160511_QHF_FH_JSI12i_3	136.16	108.63			0.97792	1.0226	39.873	9	3	Median	1.1205	0.94893	33.654	4	3	Median	0.73588	0.86792	38.787	2	0	Median	0.77783	0.74958	83.848	2	0	Median	1.011	1.0226	NaN	1	0	Median	1760000000	750410000	1009600000	383090000	169200000	213880000	359140000	199370000	159770000	374170000	143530000	230640000	643590000	238310000	405290000	44279	2319	41683	268462;268463;268464;268465;268466;268467;268468;268469;268470;268471	360142;360143;360144;360145;360146;360147;360148;360149;360150;360151;360152;360153;360154;360155	360155			14	
SALLDFYMK	1	Unmodified	1086.542	0.54196796	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		78.213	77.515	2	0.0017027	63803	160511_QHF_FH_JSI9i_3	67.897	54.318			0.91358	0.80576	6.0446	2	1	Median	1.0046	0.84094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83085	0.77204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	101630000	50820000	50812000	15851000	6928200	8923100	0	0	0	85781000	43892000	41889000	0	0	0	44280	3860	41684	268472;268473	360156;360157;360158	360158			3	
SALLHADFR	0	Unmodified	1028.5403	0.54032847	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		37.204	35.746	3	0.00045833	29842	160511_QHF_FH_JSI10i_3	67.726	48.47			1.355	1.5387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.355	1.5387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164070000	45168000	118900000	0	0	0	164070000	45168000	118900000	0	0	0	0	0	0	44281	5108	41685	268474;268475	360159;360160	360160			2	
SALLPVLHHK	1	Unmodified	1113.6659	0.66586334	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	32.11	32.032	3	0.0067546	27011	160511_QHF_FH_JSI12i_3	47.228	33.419			1.1099	1.1342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1099	1.1342	NaN	1	1	Median	68452000	35602000	32850000	0	0	0	0	0	0	0	0	0	68452000	35602000	32850000	44282	4988	41686	268476	360161	360161			1	
SALMPAQLFFK	1	Unmodified	1251.6686	0.66856545	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.316	93.293	2	0.0016582	80912	160511_QHF_FH_JSI12i_3	75.378	63.888			1.2836	1.3264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2836	1.3264	NaN	1	1	Median	23187000	9627800	13559000	0	0	0	0	0	0	0	0	0	23187000	9627800	13559000	44283	3636	41687	268477	360162	360162			1	
SALNDVTAARK	1	Unmodified	1144.62	0.62003536	730	O95801	TTC4	Tetratricopeptide repeat protein 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			18.565	17.489	3	0.038552	14256	160511_QHF_FH_JSI10i_3	29.215	20.91			0.65451	0.76434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65451	0.76434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25247000	15664000	9582500	0	0	0	25247000	15664000	9582500	0	0	0	0	0	0	44284	730	41688	268478	360163	360163			1	
SALNEVHLVVMR	0	Unmodified	1366.7391	0.73910463	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	1	1	3	4	62.48	57.878	2;3	1.3596E-07	31744	160513_QHF_FH_JSI10Kac_6	110.29	94.156			1.1874	1.2205	53.957	8	8	Median	1.2338	1.0543	NaN	1	1	Median	1.0882	1.2935	NaN	1	1	Median	1.7018	1.5839	80.612	3	3	Median	1.1427	1.1516	52.72	3	3	Median	388380000	186530000	201840000	19012000	9408500	9603800	25314000	11089000	14226000	170650000	72445000	98207000	173400000	93592000	79806000	44285	2947	41689	268479;268480;268481;268482;268483;268484;268485;268486;268487	360164;360165;360166;360167;360168;360169;360170;360171;360172	360172			9	
SALNEVHLVVMR	0	Oxidation (M)	1382.734	0.73401926	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				57.456	48.281	3	0.030679	25680	160513_QHF_FH_JSI9Kac_6	35.3	23.662			1.2111	1.0324	NaN	1	1	Median	1.2111	1.0324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18039000	6853900	11185000	18039000	6853900	11185000	0	0	0	0	0	0	0	0	0	44286	2947	41689	268488	360173	360173			1	
SALQALEMDRK	1	Unmodified	1260.6496	0.64962092	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							1	5	1		38.969	38.093	2;3	0.00052947	33325	160511_QHF_FH_JSI9i_2	58.098	46.46			1.1382	1.1417	34.774	4	1	Median	1.1303	0.96233	NaN	1	0	Median	1.171	1.3986	4.5245	2	1	Median	0.73077	0.67949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	350830000	171620000	179200000	95867000	40867000	55000000	169220000	83434000	85782000	85742000	47322000	38420000	0	0	0	44287	2604	41690	268489;268490;268491;268492;268493;268494;268495	360174;360175;360176;360177;360178;360179	360179			5	
SALQELEELK	1	Unmodified	1158.6132	0.61321864	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.283	65.984	2	0.00055431	56803	160511_QHF_FH_JSI12i_2	82.445	49.183			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44288	1347	41691	268496	360180	360180			1	
SALQHEK	1	Unmodified	811.41882	0.41881635	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	0.86236	0.49632	2	0.020108	248	160511_QHF_FH_JSI11i_2	57.281	41.127			0.43544	0.36449	62.769	3	0	Median	0.43544	0.36449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.033	0.9753	NaN	1	0	Median	0.28526	0.30362	NaN	1	0	Median	47631000	31557000	16073000	8335300	4959300	3375900	0	0	0	16058000	9970700	6087200	23237000	16627000	6610300	44289	485	41692	268497;268498;268499	360181	360181			1	
SALQHEKEGYTIYK	2	Acetyl (K)	1707.8468	0.84680041	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.3	0.471								2	1			2	1	50.021	39.786	2;3	0.00043855	21560	160513_QHF_FH_JSI11Kac_6	106.01	82.631			0.25012	0.2594	193.16	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.06714	0.066191	NaN	1	1	Median	0.9318	1.0166	NaN	1	0	Median	13959000	12770000	1188600	0	0	0	0	0	0	11464000	11192000	272250	2494500	1578100	916380	44290	485	41693	268500;268501;268502	360182;360183;360184	360182	248		3	
SALQSINEWAAQTTDGK	1	Unmodified	1818.8748	0.87480607	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.745	1	2	3							1	1	3	1	69.077	68.763	2	3.3622E-21	61121	160511_QHF_FH_JSI11i_3	208.15	179.25			0.79713	0.70631	32.292	4	4	Median	0.736	0.61531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96788	0.89051	13.264	2	2	Median	0.47548	0.46725	NaN	1	1	Median	155660000	93777000	61886000	25181000	14692000	10489000	0	0	0	97651000	59241000	38410000	32831000	19845000	12987000	44291	1706	41694	268503;268504;268505;268506;268507;268508	360185;360186;360187;360188;360189;360190	360186			6	
SALQSINEWAAQTTDGKLPEVTK	2	Unmodified	2486.2653	0.26528241	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							2	3	2		86.127	85.375	3	5.8915E-30	75115	160511_QHF_FH_JSI9i_2	170.28	158.15			0.94142	0.95671	31.402	7	1	Median	1.2281	1.0188	2.6238	2	0	Median	0.40798	0.4582	44.232	3	1	Plateau	0.9328	0.92123	5.345	2	0	Median	NaN	NaN	NaN	0	0	Median	583180000	303750000	279440000	126650000	55136000	71512000	250100000	147600000	102500000	206440000	101010000	105430000	0	0	0	44292	1706	41695	268509;268510;268511;268512;268513;268514;268515	360191;360192;360193;360194;360195;360196;360197;360198;360199;360200;360201;360202;360203;360204;360205;360206;360207	360204			17	
SALQVLVSILK	1	Unmodified	1169.7384	0.73835958	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	98.569	93.717	2	1.0942E-19	49338	160513_QHF_FH_JSI11Kac_6	162.38	87.915			1.1075	1.0378	26.268	7	0	Median	1.3325	1.1178	10.5	2	0	Median	0.7035	0.81564	28.536	2	0	Median	0.99274	0.92782	20.564	2	0	Median	1.4141	1.4933	NaN	1	0	Median	453370000	229840000	223530000	120540000	51914000	68625000	138520000	86539000	51979000	115600000	52323000	63281000	78705000	39062000	39643000	44293	1542	41696	268516;268517;268518;268519;268520;268521;268522	360208;360209;360210;360211;360212;360213	360209			6	
SALSGHLETVILGLLK	1	Unmodified	1649.9716	0.97160699	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.83		10	35						16	17	14	7	23	100.35	98.028	2;3	0	90724	160511_QHF_FH_JSI11i_3	381.28	341.36			0.90755	0.90836	12.883	31	31	Median	1.1235	0.92002	9.1868	11	11	Median	0.78275	0.80287	11.316	7	7	Median	1.1433	1.0915	13.518	4	4	Linear	0.83948	0.89178	15.857	9	9	Median	52802000000	27359000000	25443000000	11890000000	5350900000	6539500000	13024000000	7699800000	5324200000	6188600000	3047700000	3140900000	21699000000	11261000000	10438000000	44294	870	41697	268523;268524;268525;268526;268527;268528;268529;268530;268531;268532;268533;268534;268535;268536;268537;268538;268539;268540;268541;268542;268543;268544;268545;268546;268547;268548;268549;268550;268551;268552;268553;268554;268555;268556;268557;268558;268559;268560;268561;268562;268563;268564;268565;268566;268567;268568;268569;268570;268571;268572;268573;268574;268575;268576;268577;268578;268579;268580;268581;268582;268583	360214;360215;360216;360217;360218;360219;360220;360221;360222;360223;360224;360225;360226;360227;360228;360229;360230;360231;360232;360233;360234;360235;360236;360237;360238;360239;360240;360241;360242;360243;360244;360245;360246;360247;360248;360249;360250;360251;360252;360253;360254;360255;360256;360257;360258;360259;360260;360261;360262;360263;360264;360265;360266;360267;360268;360269;360270;360271;360272;360273;360274;360275;360276;360277	360215			64	
SALSIVR	0	Unmodified	744.44939	0.4493882	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		29.057	29.057	2	0.02937	25132	160511_QHF_FH_JSI11i_3	52.636	17.003			0.7892	0.75287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7892	0.75287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81781000	38280000	43501000	0	0	0	0	0	0	81781000	38280000	43501000	0	0	0	44295	1734	41698	268584	360278;360279	360278			2	
SALTIQLIQNHFVDEYDPTIEDSYRK	1	Unmodified	3094.5247	0.52474457	785;786	P01111;P01116	NRAS;KRAS	GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed	no	no	0	0	0	1		By MS/MS			16	0									1		1			83.753	78.127	4	3.749E-130	43450	160513_QHF_FH_JSI10Kac_6	248.94	237.29			0.713	0.85479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.713	0.85479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	261570000	162330000	99247000	0	0	0	261570000	162330000	99247000	0	0	0	0	0	0	44296	785;786	41699	268585	360280;360281	360280			2	
SALTVQFVQGIFVEK	1	Unmodified	1664.9138	0.91375776	1946;2023	P61224;A6NIZ1;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.65		3	7						9	5	5	5	4	95.95	91.95	2;3	1.6168E-74	43904	160513_QHF_FH_JSI12Kac_6	226.59	201.74			1.0286	0.99435	28.97	19	5	Median	1.1646	0.99435	11.783	5	2	Median	0.60869	0.69741	26.015	5	0	Median	1.187	1.1586	33.645	5	2	Median	0.99154	1.0547	33.654	4	1	Median	1702000000	803710000	898270000	358800000	168480000	190320000	498270000	274130000	224130000	306150000	143770000	162390000	538760000	217340000	321420000	44297	1946;2023	41700	268586;268587;268588;268589;268590;268591;268592;268593;268594;268595;268596;268597;268598;268599;268600;268601;268602;268603;268604	360282;360283;360284;360285;360286;360287;360288;360289;360290;360291;360292;360293;360294;360295;360296;360297;360298;360299;360300;360301;360302;360303;360304;360305	360301			23	
SALTVQFVTGTFIEK	1	Unmodified	1639.8821	0.88212328	5598	Q9Y3L5;P10114	RAP2C;RAP2A	Ras-related protein Rap-2c;Ras-related protein Rap-2a	yes	no	0	0	0	0	By MS/MS			By MS/MS	2.67	0.471		1	2							1			2	92.934	92.833	2;3	3.9783E-07	80406	160511_QHF_FH_JSI12i_3	126.48	99.515			1.0703	1.0845	3.1701	3	2	Plateau	1.2285	1.0795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0955	1.1133	3.7117	2	1	Median	81653000	41156000	40496000	5508200	2457400	3050700	0	0	0	0	0	0	76144000	38699000	37445000	44298	5598	41701	268605;268606;268607	360306;360307;360308;360309	360309			4	
SALVQIYELEEHK	1	Unmodified	1557.8039	0.80387296	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2.33	0.471		2	1							1	1	1		65.503	64.918	3	3.0898E-05	57645	160511_QHF_FH_JSI11i_3	73.156	54.426			1.1421	1.1137	3.4876	3	0	Median	1.2731	1.1137	NaN	1	0	Median	0.92434	1.1315	NaN	1	0	Median	1.1421	1.0585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	178880000	96040000	82844000	30366000	13259000	17107000	48925000	24276000	24650000	99592000	58505000	41087000	0	0	0	44299	1825	41702	268608;268609;268610	360310;360311;360312	360310			3	
SALYYVDLIGGK	1	Unmodified	1297.6918	0.69180331	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.66		2						3	4	2	3	3	1	82.899	75.607	2	6.0566E-12	38961	160513_QHF_FH_JSI12Kac_6	120.06	102.83			1.2002	1.2999	17.782	9	6	Median	1.7053	1.4332	3.5179	2	2	Median	0.94454	1.1458	24.787	3	3	Plateau	1.2002	1.1785	11.694	3	1	Median	0.92505	0.99245	NaN	1	0	Median	576550000	272020000	304530000	105240000	43295000	61944000	180360000	95044000	85318000	248120000	115360000	132760000	42827000	18320000	24508000	44300	1040	41703	268611;268612;268613;268614;268615;268616;268617;268618;268619	360313;360314;360315;360316;360317;360318;360319;360320;360321;360322	360321			10	
SAMAHDPISPVLSDPHLDAVDQR	0	Unmodified	2470.1911	0.19107161	470	O75063	FAM20B	Glycosaminoglycan xylosylkinase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		65.429	65.429	3	0.00067382	58164	160511_QHF_FH_JSI11i_3	42.041	35.088			1.6074	1.5252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6074	1.5252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24776000	8622300	16154000	0	0	0	0	0	0	24776000	8622300	16154000	0	0	0	44301	470	41704	268620	360323	360323			1	
SAMDSPVPASMFAPEPSSPGAAR	0	Unmodified	2259.03	0.03000286	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.646	73.081	3	0.0020784	66597	160511_QHF_FH_JSI12i_1	26.754	20.178			1.0205	1.0181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0205	1.0181	NaN	1	1	Median	10130000	8644900	1485300	0	0	0	0	0	0	0	0	0	10130000	8644900	1485300	44302	103	41705	268621	360324	360324			1	
SAMGMFVDAFSK	1	Unmodified	1289.5784	0.57842982	3469	Q8IYI6	EXOC8	Exocyst complex component 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		86.491	85.893	2	0.00010231	76603	160511_QHF_FH_JSI11i_3	89.403	69.1			0.73944	0.6505	61.961	2	1	Median	0.52715	0.41973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0372	1.0081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115080000	60188000	54894000	52460000	29929000	22532000	0	0	0	62621000	30259000	32362000	0	0	0	44303	3469	41706	268622;268623	360325;360326;360327	360326			3	
SAMMYIQELR	0	Unmodified	1240.5944	0.59441423	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		72.881	64.663	2	2.7545E-07	34350	160513_QHF_FH_JSI9Kac_6	112.71	92.924			1.0379	1.1612	13.526	4	4	Median	1.4717	1.2552	NaN	1	1	Median	1.0067	1.1642	11.38	2	2	Median	0.99762	0.95272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	212530000	116420000	96107000	21377000	9791100	11586000	163530000	92251000	71282000	27616000	14378000	13238000	0	0	0	44304	432	41707	268624;268625;268626;268627	360328;360329;360330;360331	360329			4	
SAMPFTASPASSTTAR	0	Unmodified	1581.7457	0.74570615	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.64	2	4	3				3	1		2	3	4	4	47.171	43.385	2	1.3852E-30	37136	160511_QHF_FH_JSI12i_2	195.25	184.88			1.1286	1.0537	15.976	13	1	Median	1.0813	0.90236	6.5525	2	0	Median	0.83328	1.0375	8.4404	3	1	Plateau	1.1801	1.1753	6.2886	4	0	Median	1.05	1.1164	20.099	4	0	Median	1777100000	862040000	915060000	231380000	116090000	115290000	189720000	116150000	73573000	732150000	308900000	423250000	623850000	320890000	302950000	44305	98	41708	268628;268629;268630;268631;268632;268633;268634;268635;268636;268637;268638;268639;268640	360332;360333;360334;360335;360336;360337;360338;360339;360340;360341;360342;360343;360344;360345;360346;360347;360348;360349;360350;360351;360352	360335			21	
SAMPFTASPASSTTAR	0	Oxidation (M)	1597.7406	0.74062078	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	30.258	29.812	2	0.029895	26536	160511_QHF_FH_JSI10i_1	58.674	45.718			1.8012	1.9835	30.181	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0753	2.4553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5633	1.6023	NaN	1	1	Median	79591000	20622000	58969000	0	0	0	45771000	9531700	36240000	0	0	0	33819000	11090000	22729000	44306	98	41708	268641;268642	360353;360354	360354			2	
SAMPIEVMMNETAQQNMENHPVIR	0	Unmodified	2769.2707	0.27066061	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	85.413	84.843	3;4	5.7683E-35	73729	160511_QHF_FH_JSI12i_3	180.63	173.75			1.1621	1.1539	11.18	8	0	Median	1.3341	1.1288	NaN	1	0	Median	0.96236	1.1539	2.7318	2	0	Median	1.3482	1.3096	0.90242	2	0	Median	1.4454	1.4564	18	3	0	Plateau	463720000	214220000	249500000	54290000	21956000	32334000	141480000	76736000	64746000	132400000	55643000	76756000	135550000	59880000	75667000	44307	2226	41709	268643;268644;268645;268646;268647;268648;268649;268650	360355;360356;360357;360358;360359;360360;360361;360362;360363;360364	360364			9	
SAMQSVVDDWIESYK	1	Unmodified	1756.7978	0.7978013	3521;3784	Q8N3U4;Q8WVM7	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	96.207	96.027	2	1.4436E-29	83221	160511_QHF_FH_JSI12i_3	183.79	174.13			1.2252	1.2439	23.857	6	0	Median	1.1498	1	NaN	1	0	Median	0.77408	0.93124	NaN	1	0	Median	1.4033	1.3644	30.606	2	0	Median	1.3149	1.4372	2.8864	2	0	Median	369810000	175680000	194130000	58035000	28609000	29426000	56647000	31080000	25567000	144330000	62483000	81846000	110800000	53512000	57291000	44308	3521;3784	41710	268651;268652;268653;268654;268655;268656	360365;360366;360367;360368;360369;360370;360371;360372;360373;360374;360375;360376;360377;360378;360379;360380	360380			16	
SAMSVQSSLVMHPIYAYGSEEQR	0	Unmodified	2569.1941	0.19410807	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		3	3						1	2	2	2	1	72.849	71.238	3	2.7221E-24	64126	160511_QHF_FH_JSI11i_3	157.88	140.73			1.0788	1.1166	8.5418	6	5	Median	1.493	1.2763	NaN	1	0	Median	0.89346	1.0956	10.164	2	2	Median	1.1466	1.0914	7.5144	2	2	Median	1.075	1.0832	NaN	1	1	Median	394770000	182990000	211770000	49734000	13342000	36391000	85018000	47327000	37691000	164990000	77930000	87064000	95024000	44395000	50628000	44309	3912	41711	268657;268658;268659;268660;268661;268662;268663	360381;360382;360383;360384;360385;360386;360387;360388;360389;360390	360383			10	
SANAEDAQEFSDVER	0	Unmodified	1666.7071	0.70707204	4866	Q9HCY8	S100A14	Protein S100-A14	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.978	34.745	2	0.00017762	30519	160511_QHF_FH_JSI9i_1	106.32	95.418			0.49426	0.39747	NaN	1	1	Median	0.49426	0.39747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19895000	11721000	8174100	19895000	11721000	8174100	0	0	0	0	0	0	0	0	0	44310	4866	41712	268664	360391	360391			1	
SANAFLTPSYTWTPLK	1	Unmodified	1795.9145	0.91448604	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			90.235	89.735	2	0.0022368	79767	160511_QHF_FH_JSI10i_2	64.55	34.112			1.393	1.7524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.393	1.7524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11411000	5349300	6061500	0	0	0	11411000	5349300	6061500	0	0	0	0	0	0	44311	2667	41713	268665	360392;360393	360393			2	
SANFLDHLYVGIPRPSGEK	1	Unmodified	2099.08	0.079988241	3693	Q8TB96	ITFG1	T-cell immunomodulatory protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		77.288	77.288	4	0.00034915	68902	160511_QHF_FH_JSI11i_3	53.779	43.991			0.77053	0.70514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77053	0.70514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35075000	18611000	16464000	0	0	0	0	0	0	35075000	18611000	16464000	0	0	0	44312	3693	41714	268666	360394	360394			1	
SANPAMQLDR	0	Unmodified	1101.5237	0.52369213	5259	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		25.811	25.452	2	0.0012282	22274	160511_QHF_FH_JSI10i_1	70.389	35.032			1.1807	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1807	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39087000	16322000	22765000	0	0	0	0	0	0	39087000	16322000	22765000	0	0	0	44313	5259	41715	268667;268668	360395;360396	360395			2	
SANPPHTIQASEEQSSTPAPVK	1	Unmodified	2275.1081	0.10805348	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	31.57	30.819	3	5.8073E-16	26675	160511_QHF_FH_JSI9i_2	136.14	126.35			0.83499	0.8411	13.139	5	2	Median	1.0166	0.8411	NaN	1	0	Median	0.83499	1.04	NaN	1	0	Median	0.94422	0.92913	NaN	1	0	Median	0.75065	0.7669	1.6309	2	2	Median	188170000	105310000	82867000	35073000	19543000	15530000	40382000	21519000	18863000	42199000	24189000	18011000	70521000	40058000	30463000	44314	5610	41716	268669;268670;268671;268672;268673	360397;360398;360399;360400;360401;360402	360399			6	
SANPPHTIQASEEQSSTPAPVKK	2	Unmodified	2403.203	0.2030165	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		26.127	25.481	4	6.2091E-07	21760	160511_QHF_FH_JSI11i_3	64.295	55.905			1.0322	1.0912	3.0359	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90962	1.068	NaN	1	0	Median	1.1712	1.1148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63726000	36048000	27679000	0	0	0	26867000	15499000	11368000	36859000	20548000	16311000	0	0	0	44315	5610	41717	268674;268675	360403;360404	360403			2	
SANSELGGIWSVGQR	0	Unmodified	1559.7692	0.76921879	4297	Q99627	COPS8	COP9 signalosome complex subunit 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.887	63.744	3	0.0018242	56675	160511_QHF_FH_JSI11i_3	50.053	38.948			0.96732	0.94979	13.869	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0983	1.0477	NaN	1	0	Median	0.85195	0.86107	NaN	1	0	Median	167420000	77569000	89850000	0	0	0	0	0	0	81810000	34863000	46947000	85610000	42707000	42903000	44316	4297	41718	268676;268677	360405	360405			1	
SANTQVVR	0	Unmodified	873.46683	0.46682918	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	8.6584	4.5386	2	0.0035616	3722	160513_QHF_FH_JSI11Kac_4	85.676	54.386			0.87203	0.90492	2.4207	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94476	0.92054	NaN	1	0	Median	0.8049	0.88956	NaN	1	0	Median	88492000	48888000	39603000	0	0	0	0	0	0	11158000	5433700	5724600	77333000	43455000	33879000	44317	2261	41719	268678;268679	360406;360407;360408;360409	360408			4	
SANVNEFPVLK	1	Unmodified	1216.6452	0.64518747	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	5.89	4	4	3			3	4	1		3	7	3	6	60.794	55.722	2	6.0691E-10	48568	160511_QHF_FH_JSI9i_2	158.79	137.49			0.89428	0.94747	32.171	18	1	Median	0.90855	0.74449	33.543	3	0	Median	0.79712	0.94165	32.144	6	0	Median	0.96073	0.95191	27.037	3	0	Median	0.97455	1.0542	36.49	6	1	Median	5198500000	2845000000	2353600000	1148200000	566270000	581890000	1328000000	785030000	542940000	1491400000	792830000	698530000	1231000000	700820000	530230000	44318	1844	41720	268680;268681;268682;268683;268684;268685;268686;268687;268688;268689;268690;268691;268692;268693;268694;268695;268696;268697;268698	360410;360411;360412;360413;360414;360415;360416;360417;360418;360419;360420;360421;360422;360423;360424;360425;360426;360427;360428;360429;360430;360431;360432;360433;360434;360435;360436;360437;360438;360439	360430			30	
SAPAGASEPPPPGGVGLGIR	0	Unmodified	1785.9373	0.93734675	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	54.368	53.831	2	3.6097E-06	48740	160511_QHF_FH_JSI11i_1	100.22	86.065			1.0893	1.0783	72.488	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8545	1.8003	NaN	1	1	Median	0.63985	0.64585	NaN	1	1	Median	33340000	16324000	17016000	0	0	0	0	0	0	15591000	5135300	10456000	17749000	11189000	6560100	44319	3434	41721	268699;268700;268701	360440;360441;360442	360440			3	
SAPAGSSHPAASAR	0	Acetyl (Protein N-term)	1307.6218	0.62182627	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	1	0	0	By MS/MS			By MS/MS	5	5.66	2					1				1			2	10.667	7.9574	2	5.0743E-06	6782	160511_QHF_FH_JSI9i_1	167.71	146.74			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44320	701	41722	268702;268703;268704	360443;360444;360445	360444			3	
SAPALACGNAMVFK	1	Unmodified	1435.6952	0.69519091	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	60.457	59.543	2	2.059E-07	51153	160511_QHF_FH_JSI12i_2	94.692	73.006			1.4451	1.5341	71.493	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93222	0.92535	NaN	1	1	Median	2.2401	2.5434	NaN	1	1	Median	155350000	61933000	93419000	0	0	0	0	0	0	87369000	38128000	49241000	67984000	23806000	44178000	44321	1645	41723	268705;268706;268707	360446;360447;360448	360447			3	
SAPAMQSSGSFNYARPK	1	Unmodified	1797.8468	0.84681718	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			36.113	34.664	3	0.0003918	28981	160511_QHF_FH_JSI10i_3	56.817	41.302			0.88111	0.851	9.4148	2	0	Median	0.98151	0.79619	NaN	1	0	Median	0.79098	0.90958	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133110000	75913000	57200000	82204000	45510000	36694000	50910000	30403000	20507000	0	0	0	0	0	0	44322	3805	41724	268708;268709	360449;360450	360449			2	
SAPAMQSSGSFNYARPK	1	Oxidation (M)	1813.8417	0.8417318	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				25.704	24.365	3	0.017135	19661	160511_QHF_FH_JSI9i_3	41.542	25.658			1.2397	1.0259	NaN	1	0	Median	1.2397	1.0259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31803000	15014000	16789000	31803000	15014000	16789000	0	0	0	0	0	0	0	0	0	44323	3805	41724	268710	360451;360452	360451		2296	2	
SAPAPKK	2	Unmodified	697.41227	0.41227441	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F	no	no	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			4.6406	4.1524	2	0.046365	2089	160511_QHF_FH_JSI10i_3	44.611	34.861			1.2573	1.2106	66.732	2	0	Median	0.94676	0.75519	NaN	1	0	Median	1.6697	1.9405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111260000	51729000	59527000	49188000	25579000	23610000	62067000	26150000	35917000	0	0	0	0	0	0	44324	1235;1902;2915	41725	268711;268712	360453	360453			1	
SAPAPKKGSKK	4	3 Acetyl (K)	1223.6874	0.68738664	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F	no	no	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	23.997	16.693	2	0.0078255	10509	160513_QHF_FH_JSI11Kac_3	61.353	32.955			0.80164	0.82877	45.143	5	0	Median	NaN	NaN	NaN	0	0	Median	1.4701	1.7372	18.604	2	0	Median	0.78955	0.76102	NaN	1	0	Median	0.74429	0.78659	7.3865	2	0	Median	26007000	12816000	13191000	0	0	0	11244000	4077000	7167300	3502900	1902100	1600700	11259000	6836500	4422900	44325	1235;1902;2915	41726	268713;268714;268715;268716;268717	360454;360455;360456;360457;360458	360454	1117;1118;1119;1122;2714;2715;2716		5	
SAPAPKKGSKKAVTK	5	4 Acetyl (K)	1664.9461	0.94612052	1235;1902;2915	Q16778;P23527;P06899;Q8N257;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F	no	no	4	0	0	4		By MS/MS		By MS/MS	12	0					4						2		2	43.262	34.375	2;3	0.0025144	16038	160513_QHF_FH_JSI12Kac_2	48.547	36.164			0.9804	1.0796	25.539	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1837	1.3755	17.574	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86526	0.92049	5.8755	2	0	Median	21163000	11078000	10085000	0	0	0	9200000	4510200	4689800	0	0	0	11963000	6567400	5395500	44326	1235;1902;2915	41727	268718;268719;268720;268721	360459;360460;360461;360462;360463;360464	360462	1114;1117;1118;1119;1122;2713;2714;2715;2716		6	
SAPASQASLR	0	Unmodified	986.51451	0.51450765	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	5.33	6.13	4						2			1	2	2	1	13.992	10.806	2	9.2833E-06	9450	160511_QHF_FH_JSI11i_1	105.52	60.439			0.79398	0.79299	11.91	6	1	Median	0.94307	0.7708	NaN	1	0	Median	0.66861	0.78715	5.0601	2	1	Median	0.9425	0.92094	7.0691	2	0	Median	0.65693	0.68866	NaN	1	0	Median	520140000	303330000	216810000	104300000	57988000	46308000	126090000	79801000	46294000	152380000	88780000	63603000	137360000	76760000	60603000	44327	2587	41728	268722;268723;268724;268725;268726;268727	360465;360466;360467	360465			3	
SAPATGGVK	1	Unmodified	786.42357	0.42356738	2078;2753	P68431;Q71DI3;Q16695	HIST1H3A;HIST2H3A;HIST3H3	Histone H3.1;Histone H3.2;Histone H3.1t	no	no	0	0	0	0	By matching	By matching	By MS/MS	By matching	1.43	0.495	4	3								2	2	2	1	7.5085	7.1601	2	0.00040657	4828	160511_QHF_FH_JSI11i_1	81.296	41.193			0.78929	0.82646	29.386	7	0	Median	1.1139	0.91331	48.141	2	0	Median	0.63691	0.77606	38.824	2	0	Median	0.98436	0.96432	28.469	2	0	Median	0.77671	0.82646	NaN	1	0	Median	2705300000	1396500000	1308800000	634790000	280540000	354250000	727860000	440090000	287770000	649640000	316100000	333540000	693010000	359760000	333240000	44328	2078;2753	41729	268728;268729;268730;268731;268732;268733;268734	360468	360468			1	
SAPATGGVKK	2	Acetyl (K)	956.5291	0.52909508	2078;2753	P68431;Q71DI3;Q16695	HIST1H3A;HIST2H3A;HIST3H3	Histone H3.1;Histone H3.2;Histone H3.1t	no	no	1	0	0	1				By MS/MS	12	0					1								1	16.514	9.3812	2	0.040022	5837	160513_QHF_FH_JSI12Kac_2	56.729	24.795			13.207	14.264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.207	14.264	NaN	1	1	Median	1570400	159060	1411300	0	0	0	0	0	0	0	0	0	1570400	159060	1411300	44329	2078;2753	41730	268735	360469	360469			1	
SAPDQEVR	0	Unmodified	900.43011	0.43010932	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.4091	7.7249	2	0.0045508	5321	160511_QHF_FH_JSI9i_1	67.169	44.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44330	1451	41731	268736	360470	360470			1	
SAPDRQEEISK	1	Unmodified	1258.6153	0.61534391	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	1				By MS/MS	2.5	0.5		1	1										2	9.1525	8.8745	3	0.0050939	6472	160511_QHF_FH_JSI12i_2	51.013	29.254			0.59759	0.62969	49.518	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59759	0.62969	49.518	2	2	Median	89258000	51149000	38109000	0	0	0	0	0	0	0	0	0	89258000	51149000	38109000	44331	5381	41732	268737;268738	360471;360472	360471			2	
SAPDTELVNVTHLNTEVK	1	Unmodified	1966.0007	0.0007348666	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.803	62.959	3	0.00015334	55783	160511_QHF_FH_JSI10i_2	63.46	53.501			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44332	5136	41733	268739	360473	360473			1	
SAPGGGSKVPQKK	3	Unmodified	1239.6935	0.69353465	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				5.7131	5.1901	3	0.0083698	3219	160511_QHF_FH_JSI9i_3	56.122	26.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60430000	60430000	0	60430000	60430000	0	0	0	0	0	0	0	0	0	0	44333	857	41734	268740	360474	360474			1	
SAPLDAALHALQEEQAR	0	Acetyl (Protein N-term)	1860.933	0.93298965	2099	P80217	IFI35	Interferon-induced 35 kDa protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1.8	0.4	1	4								2	2	1		100.62	100.55	2;3	7.2949E-11	88290	160511_QHF_FH_JSI11i_2	171.76	152.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44334	2099	41735	268741;268742;268743;268744;268745	360475;360476;360477;360478;360479;360480	360479			6	
SAPLEIGLQR	0	Unmodified	1082.6084	0.60840804	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									1	1	2	51.027	50.305	2	0.0032495	45313	160511_QHF_FH_JSI10i_1	56.729	41.067			0.94833	0.80677	23.055	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.81886	0.97368	NaN	1	0	Median	1.137	1.0911	NaN	1	0	Median	0.82813	0.90186	36.762	2	1	Median	210900000	108850000	102050000	0	0	0	43463000	25574000	17889000	37532000	12358000	25174000	129910000	70918000	58989000	44335	3090	41736	268746;268747;268748;268749	360481;360482	360482			2	
SAPLPNDSQAR	0	Unmodified	1154.568	0.56799978	1619	P48426	PIP4K2A	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		16.927	16.335	2	0.0077573	13790	160511_QHF_FH_JSI11i_1	51.445	34.205			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44336	1619	41737	268750;268751	360483;360484	360483			2	
SAPPQLPSFYK	1	Unmodified	1233.6394	0.63937381	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.569	60.255	2	0.045281	51703	160511_QHF_FH_JSI12i_2	44.425	32.577			0.5375	0.5746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5375	0.5746	NaN	1	1	Median	44896000	24644000	20251000	0	0	0	0	0	0	0	0	0	44896000	24644000	20251000	44337	3377	41738	268752	360485	360485			1	
SAPSATPIFAPGENCSPAWGAAPAAYDAADTHLR	0	Acetyl (Protein N-term)	3481.5997	0.5997172	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	94.393	94.052	3	1.645E-07	85418	160511_QHF_FH_JSI12i_1	56.383	50.353			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44338	2532	41739	268753;268754	360486;360487	360487			2	
SAPSGPVR	0	Unmodified	769.40825	0.40825167	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.878	8.4349	2	0.0037934	6141	160511_QHF_FH_JSI11i_2	70.67	27.755			0.87737	0.93117	28.754	4	1	Median	1.6881	1.4669	NaN	1	0	Median	0.59687	0.73832	NaN	1	0	Median	0.92229	0.93175	NaN	1	0	Median	0.83464	0.93058	NaN	1	1	Median	473100000	249570000	223530000	123060000	42421000	80638000	81167000	54622000	26545000	170820000	92318000	78502000	98057000	60213000	37844000	44339	1474	41740	268755;268756;268757;268758	360488;360489;360490;360491;360492	360491			5	
SAPSIPK	1	Unmodified	698.39629	0.39629	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	2	2	21.516	18.587	2	0.011468	15546	160511_QHF_FH_JSI11i_1	70.912	10.125			0.93218	0.9218	11.832	6	0	Median	1.2012	0.96147	NaN	1	0	Median	0.95494	1.1119	NaN	1	0	Median	0.93218	0.9218	2.882	2	0	Median	0.74768	0.8154	4.6724	2	0	Median	5996300000	3156100000	2840200000	1242500000	535480000	707040000	1430900000	744580000	686290000	1514300000	888540000	625790000	1808600000	987460000	821110000	44340	1503	41741	268759;268760;268761;268762;268763;268764;268765	360493;360494;360495;360496;360497;360498;360499;360500;360501;360502;360503	360493			11	
SAPSSSDSATRDPSTSVPASGAHQPPQTTEGEK	1	Unmodified	3266.4923	0.49233482	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		26.422	25.843	4	3.8825E-11	22684	160511_QHF_FH_JSI11i_1	63.724	58.459			0.92181	0.91073	6.019	3	1	Plateau	1.1826	0.97174	NaN	1	0	Median	0.88796	1.0271	NaN	1	1	Median	0.92181	0.91073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	253870000	116020000	137850000	58285000	29008000	29277000	84479000	33361000	51118000	111110000	53653000	57457000	0	0	0	44341	5460	41742	268766;268767;268768	360504;360505;360506;360507;360508	360505			5	
SAPSTGGVK	1	Unmodified	802.41848	0.418482	2133	P84243	H3F3A	Histone H3.3	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		8.8499	1.5135	2	0.015791	3535	160513_QHF_FH_JSI11Kac_3	51.059	9.8322			0.81679	0.87463	13.414	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67997	0.79548	NaN	1	0	Median	0.98114	0.96165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17401000	9423300	7977500	0	0	0	5618900	3095700	2523200	11782000	6327600	5454300	0	0	0	44342	2133	41743	268769;268770	360509	360509			1	
SAPVMLTLSDSK	1	Unmodified	1247.6431	0.64313856	2651	Q15291	RBBP5	Retinoblastoma-binding protein 5	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.75	0.433	1	3									1	1	2	57.38	56.528	2	0.00037777	48460	160511_QHF_FH_JSI12i_2	70.977	60.219			0.91618	1.0486	60.774	4	1	Median	NaN	NaN	NaN	0	0	Median	0.87377	1.0741	NaN	1	0	Median	0.96064	1.0237	NaN	1	0	Median	1.5062	1.6205	95.785	2	1	Median	140670000	55967000	84701000	0	0	0	20084000	12199000	7884800	38495000	20528000	17967000	82089000	23240000	58849000	44343	2651	41744	268771;268772;268773;268774	360510;360511;360512;360513	360511			4	
SAPWNSFLPPPPPMPGPR	0	Unmodified	1943.9716	0.97162377	2748	Q16637	SMN1	Survival motor neuron protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	98.385	98.249	2;3	6.6921E-12	86255	160511_QHF_FH_JSI11i_2	152.47	129.59			1.1099	1.1065	8.9466	10	0	Median	1.192	1.0366	8.6374	2	0	Median	0.92364	1.1196	1.0754	2	0	Median	1.1364	1.0705	11.928	3	0	Median	1.1077	1.1016	7.1992	3	0	Plateau	223890000	107280000	116610000	41235000	19949000	21286000	48722000	24922000	23800000	74648000	36134000	38514000	59283000	26275000	33009000	44344	2748	41745	268775;268776;268777;268778;268779;268780;268781;268782;268783;268784	360514;360515;360516;360517;360518;360519;360520;360521;360522;360523;360524;360525;360526;360527;360528;360529;360530;360531;360532;360533;360534	360529			21	
SAPYEFPEESPIEQLEER	0	Unmodified	2148.9851	0.98514438	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		84.719	84.174	2	8.4343E-07	76354	160511_QHF_FH_JSI10i_1	113.76	105.89			1.0279	0.90788	17.214	4	3	Median	1.05	0.88462	7.7301	2	2	Median	1.0639	1.2324	NaN	1	0	Median	0.91952	0.88219	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76222000	38271000	37951000	15880000	7188600	8691300	29205000	13804000	15400000	31138000	17278000	13859000	0	0	0	44345	2168	41746	268785;268786;268787;268788	360535;360536;360537;360538;360539;360540	360537			6	
SAQAFTHLK	1	Unmodified	1001.5294	0.52942943	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	20.229	19.837	2;3	0.0006182	16066	160511_QHF_FH_JSI12i_3	87.806	64.038			0.97083	0.99277	25.557	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.51075	0.59814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89105	0.90056	13.786	2	2	Median	384950000	193240000	191710000	0	0	0	44877000	25972000	18904000	0	0	0	340070000	167270000	172800000	44346	5257	41747	268789;268790;268791	360541;360542;360543	360542			3	
SAQAQMR	0	Acetyl (Protein N-term);Oxidation (M)	848.38105	0.38105064	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	0				4						1	1	1	1	5.0978	-2.6333	2	0.0027231	1474	160513_QHF_FH_JSI11Kac_1	79.454	51.347			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44347	4910;5562	41748	268792;268793;268794;268795	360544;360545;360546;360547	360546		2552	4	
SAQAQMR	0	Acetyl (Protein N-term)	832.38614	0.38613602	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	1	0	0			By MS/MS		11	0				1								1		13.561	6.1001	2	0.0009768	4082	160513_QHF_FH_JSI11Kac_1	127.66	90.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44348	4910;5562	41748	268796	360548	360548			1	
SAQDGPAPAEK	1	Unmodified	1069.504	0.50400254	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	1	2	3	8.019	5.3703	2	5.7411E-08	5147	160511_QHF_FH_JSI10i_1	126.03	60.801			0.92877	0.9508	10.013	6	4	Median	0.98274	0.78624	NaN	1	0	Median	0.81285	0.97213	NaN	1	0	Median	1.005	0.95676	0.17807	2	2	Median	0.81985	0.86623	12.467	2	2	Median	894840000	459350000	435490000	245210000	113350000	131860000	224390000	133660000	90728000	226010000	105850000	120160000	199220000	106490000	92735000	44349	4348	41749	268797;268798;268799;268800;268801;268802;268803	360549;360550;360551;360552;360553;360554;360555;360556	360553			8	
SAQGSSSPVPSMVQK	1	Unmodified	1488.7242	0.72424243	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.736	33.131	2	6.95E-07	29560	160511_QHF_FH_JSI10i_1	166.48	117.84			1.0479	1.1188	23.278	4	4	Median	0.94481	0.77368	NaN	1	1	Median	0.98632	1.1504	NaN	1	1	Median	1.1133	1.0881	NaN	1	1	Median	1.2893	1.3438	NaN	1	1	Median	343350000	162890000	180460000	74672000	35852000	38820000	97511000	49941000	47570000	95759000	43803000	51956000	75404000	33290000	42113000	44350	1443	41750	268804;268805;268806;268807	360557;360558;360559;360560;360561	360560			5	
SAQIADLQQK	1	Unmodified	1100.5826	0.58258722	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		24.743	24.515	2	0.00031565	21501	160511_QHF_FH_JSI11i_1	90.15	72.331			0.17983	0.19204	58.223	2	1	Median	NaN	NaN	NaN	0	0	Median	0.2468	0.28986	NaN	1	1	Median	0.13103	0.12723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176890000	143140000	33750000	0	0	0	88328000	68480000	19849000	88558000	74657000	13902000	0	0	0	44351	662	41751	268808;268809	360562;360563	360562			2	
SAQMIVETEK	1	Unmodified	1134.5591	0.55907458	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.453	27.185	2	0.0052256	23632	160511_QHF_FH_JSI9i_1	56.359	35.489			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44352	3003	41752	268810	360564	360564			1	
SAQMLEEAR	0	Unmodified	1033.4862	0.48624399	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	22.153	21.142	2	0.0084785	17494	160511_QHF_FH_JSI12i_2	61.161	41.375			0.93197	1.0728	43.801	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2081	1.4623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71892	0.78708	NaN	1	1	Median	40829000	23494000	17335000	0	0	0	18517000	10349000	8168200	0	0	0	22312000	13145000	9167100	44353	3395	41753	268811;268812	360565;360566	360565			2	
SAQNLPGGGPASHSNPR	0	Unmodified	1645.7921	0.7920795	4552	Q9BYV8	CEP41	Centrosomal protein of 41 kDa	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			14.901	14.056	3	0.0001304	11164	160511_QHF_FH_JSI10i_3	52.612	41.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44354	4552	41754	268813	360567	360567			1	
SAQPASAEPR	0	Unmodified	1012.4938	0.49377221	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	7.4278	4.8001	2	3.2623E-11	4440	160511_QHF_FH_JSI9i_1	150.35	77.103			0.93061	0.93478	7.1344	6	0	Median	1.2133	1.0041	NaN	1	0	Median	0.70538	0.82829	NaN	1	0	Median	0.93486	0.92268	2.9808	2	0	Median	0.91714	0.96265	5.2935	2	0	Median	1840600000	961090000	879500000	543810000	251290000	292510000	394490000	215090000	179400000	411110000	240030000	171080000	491190000	254680000	236500000	44355	5616	41755	268814;268815;268816;268817;268818;268819	360568;360569;360570;360571;360572;360573;360574;360575;360576	360574			9	
SAQPPGNSQNIK	1	Unmodified	1239.6208	0.62076364	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.287	10.887	2	6.5304E-05	8475	160511_QHF_FH_JSI11i_1	96.171	71.353			0.87394	0.93081	25.613	4	0	Median	1.5915	1.2868	NaN	1	0	Median	0.92661	1.103	NaN	1	0	Median	0.82427	0.7855	NaN	1	0	Median	0.73295	0.7652	NaN	1	0	Median	192520000	85533000	106990000	50992000	14042000	36950000	43650000	20203000	23446000	47014000	24944000	22070000	50867000	26343000	24524000	44356	681	41756	268820;268821;268822;268823	360577;360578;360579;360580;360581;360582;360583	360577			7	
SAQQEASADVATPK	1	Unmodified	1401.6736	0.67358707	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	2	3	2	18.644	18.149	2	3.4444E-07	15424	160511_QHF_FH_JSI10i_1	89.629	78.8			1.0919	1.0731	17.282	4	2	Median	1.4653	1.2244	NaN	1	1	Median	0.76275	0.8933	NaN	1	0	Median	1.3046	1.2425	NaN	1	1	Median	0.91385	0.94043	NaN	1	0	Median	191290000	80787000	110500000	63491000	23511000	39980000	42013000	21852000	20160000	38042000	13372000	24670000	47746000	22051000	25694000	44357	3819	41757	268824;268825;268826;268827;268828;268829;268830;268831	360584;360585;360586;360587;360588;360589;360590;360591	360590			8	
SAQQESLPYNMEK	1	Unmodified	1523.6926	0.69260795	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.889	39.453	2	1.9987E-07	35811	160511_QHF_FH_JSI12i_1	138.63	112.58			0.81185	0.91591	8.1254	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.76044	0.90438	NaN	1	1	Median	0.81185	0.79099	NaN	1	1	Median	0.86063	0.91591	NaN	1	0	Median	135340000	77184000	58161000	0	0	0	44951000	28108000	16843000	45561000	26223000	19338000	44833000	22853000	21980000	44358	2899	41758	268832;268833;268834	360592;360593;360594	360593			3	
SAQTFLSEIR	0	Unmodified	1150.5982	0.59823728	4506;4499	Q9BWW4;P81877;Q9BWG4	SSBP3;SSBP2;SSBP4	Single-stranded DNA-binding protein 3;Single-stranded DNA-binding protein 2;Single-stranded DNA-binding protein 4	no	no	0	0	0	0				By MS/MS	2	0		1											1	61.344	60.03	2	0.0091373	51542	160511_QHF_FH_JSI12i_2	59.067	44.401			1.1186	1.2461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1186	1.2461	NaN	1	1	Median	46365000	18581000	27784000	0	0	0	0	0	0	0	0	0	46365000	18581000	27784000	44359	4506;4499	41759	268835	360595	360595			1	
SAQWAINR	0	Unmodified	944.48281	0.48281359	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	29.814	26.571	2	4.6983E-05	22101	160511_QHF_FH_JSI10i_3	136.11	83.43			1.1532	1.0235	21.564	13	4	Median	1.1603	0.98921	11.477	3	1	Plateau	0.69403	0.84066	9.295	3	0	Plateau	1.1004	1.0978	23.949	4	2	Median	1.3636	1.371	22.233	3	1	Median	1096400000	558310000	538080000	329370000	148040000	181330000	330450000	194120000	136330000	285500000	145750000	139760000	151060000	70395000	80666000	44360	950	41760	268836;268837;268838;268839;268840;268841;268842;268843;268844;268845;268846;268847;268848	360596;360597;360598;360599;360600;360601;360602;360603;360604;360605;360606;360607;360608;360609	360600			14	
SASAPAAEGEGTPTQPASEK	1	Acetyl (Protein N-term)	1926.8807	0.88067931	1444	P35659	DEK	Protein DEK	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.81	7			4						1	3	4	3	32.035	29.656	2;3	4.3676E-83	26105	160511_QHF_FH_JSI9i_1	135.81	131.3			1.0684	1.0327	128.3	7	1	Median	1.1235	0.92955	NaN	1	0	Median	0.90907	1.0409	2.6849	2	0	Median	1.0684	1.0327	11.907	3	0	Median	29.9	30.439	NaN	1	1	Median	503920000	236080000	267840000	113710000	53103000	60608000	119210000	73584000	45626000	153790000	58811000	94981000	117200000	50579000	66625000	44361	1444	41761	268849;268850;268851;268852;268853;268854;268855;268856;268857;268858;268859	360610;360611;360612;360613;360614;360615;360616;360617;360618;360619;360620;360621;360622	360617			13	
SASASHQADIK	1	Unmodified	1113.5415	0.54145068	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5		8					1	1		3	2	2	3	5.7716	4.229	2;3	7.9963E-48	3189	160511_QHF_FH_JSI11i_2	218.11	170.26			1.031	1.0385	23.207	8	1	Median	0.99447	0.82657	13.971	3	1	Median	0.5655	0.70366	NaN	1	0	Median	1.2637	1.2765	6.2191	2	0	Median	1.0076	1.1257	9.4913	2	0	Median	1219100000	572780000	646350000	326640000	158450000	168180000	213280000	133040000	80238000	362460000	140990000	221470000	316760000	140300000	176460000	44362	2571	41762	268860;268861;268862;268863;268864;268865;268866;268867;268868;268869	360623;360624;360625;360626;360627;360628;360629;360630;360631;360632;360633;360634	360631			12	
SASDLSEDLFK	1	Unmodified	1210.5717	0.57174776	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.991	60.602	2	0.0013341	54776	160511_QHF_FH_JSI10i_1	76.619	60.654			1.0489	1.2261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0489	1.2261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91845000	50115000	41731000	0	0	0	91845000	50115000	41731000	0	0	0	0	0	0	44363	3839	41763	268870	360635	360635			1	
SASFNTDPYVR	0	Unmodified	1255.5833	0.5833155	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	38.545	37.186	2	0.033792	31726	160511_QHF_FH_JSI12i_2	54.066	28.021			0.80404	0.87108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80404	0.87108	NaN	1	0	Median	17743000	9640200	8102400	0	0	0	0	0	0	0	0	0	17743000	9640200	8102400	44364	5381	41764	268871	360636	360636			0	
SASKPIGFEGDLR	1	Acetyl (K)	1417.7201	0.72014333	4799	Q9H981	ACTR8	Actin-related protein 8	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	66.186	55.48	2	0.0040033	30089	160513_QHF_FH_JSI10Kac_4	66.056	39.542			0.88549	1.0149	9.4184	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77856	0.94951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0071	1.0848	NaN	1	0	Median	14215000	7592500	6622500	0	0	0	8210500	4606400	3604100	0	0	0	6004400	2986000	3018400	44365	4799	41765	268872;268873	360637;360638;360639;360640	360638	3237		4	
SASLDNGGCALTTFSVLEGEK	1	Unmodified	2155.0103	0.010313275	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	84.685	84.361	2	2.2924E-24	76621	160511_QHF_FH_JSI10i_1	136.01	101.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44366	1439	41766	268874;268875	360641;360642	360642			2	
SASLISQAEHSLK	1	Unmodified	1369.7201	0.72014333	277	O15344	MID1	E3 ubiquitin-protein ligase Midline-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	49.551	49.074	2;3	3.9569E-05	43278	160511_QHF_FH_JSI11i_3	79.82	61.509			0.58583	0.6146	67.671	3	2	Median	NaN	NaN	NaN	0	0	Median	0.21931	0.26822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76896	0.79382	36.187	2	1	Median	155460000	84961000	70496000	0	0	0	32127000	24110000	8016300	0	0	0	123330000	60850000	62480000	44367	277	41767	268876;268877;268878;268879	360643;360644;360645;360646	360643			4	
SASLSSAATTGLTTQQR	0	Unmodified	1678.8486	0.84859132	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.862	38.481	2	1.0876E-24	34635	160511_QHF_FH_JSI11i_1	143.31	125.57			0.42596	0.50386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42596	0.50386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15914000	10697000	5217200	0	0	0	15914000	10697000	5217200	0	0	0	0	0	0	44368	4936	41768	268880;268881	360647;360648	360647			2	
SASPDDDLGSSNWEAADLGNEERK	1	Unmodified	2562.1106	0.11063226	105	O00193	SMAP	Small acidic protein	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	55.766	55.105	3	0.0016558	50063	160511_QHF_FH_JSI12i_1	38.933	31.221			1.2458	1.2856	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2458	1.2856	NaN	1	1	Median	19114000	5845900	13268000	0	0	0	0	0	0	0	0	0	19114000	5845900	13268000	44369	105	41769	268882	360649	360649			1	
SASPFNLAEK	1	Unmodified	1062.5346	0.53457439	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			44.714	43.704	2	0.0061216	38202	160511_QHF_FH_JSI9i_2	53.124	25.111			0.6465	0.65341	16.371	2	0	Median	0.86471	0.7336	NaN	1	0	Median	0.48336	0.58198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127650000	81887000	45759000	70882000	39249000	31633000	56764000	42638000	14126000	0	0	0	0	0	0	44370	2997	41770	268883;268884	360650;360651;360652	360650			3	
SASPFNLAEKPK	2	Unmodified	1287.6823	0.68230126	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			4								1	1	2	37.842	37.39	2;3	1.6612E-06	32726	160511_QHF_FH_JSI11i_3	107.37	71.068			0.97841	0.97004	20.224	4	0	Median	NaN	NaN	NaN	0	0	Median	1.242	1.3707	NaN	1	0	Median	1.002	0.93374	NaN	1	0	Median	0.90079	0.93302	10.896	2	0	Median	419570000	181870000	237700000	0	0	0	30214000	13051000	17163000	134420000	65308000	69107000	254940000	103510000	151430000	44371	2997	41771	268885;268886;268887;268888	360653;360654;360655;360656;360657	360653			5	
SASPFNLAEKPK	2	Acetyl (K)	1329.6929	0.69286595	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		67.321	56.278	2	0.016787	31282	160513_QHF_FH_JSI11Kac_4	50.284	37.164			0.30717	0.30451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30717	0.30451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8037100	5792700	2244400	0	0	0	0	0	0	8037100	5792700	2244400	0	0	0	44372	2997	41771	268889	360658	360658	2737		1	
SASPSVPGPTKPK	2	Acetyl (K)	1293.6929	0.69286595	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	40.232	31.361	2	0.004163	14282	160513_QHF_FH_JSI10Kac_2	65.347	55.66			0.94769	0.94573	17.921	5	0	Median	NaN	NaN	NaN	0	0	Median	0.72523	0.83636	17.381	2	0	Median	1.0621	1.034	18.152	2	0	Median	1.0082	1.0906	NaN	1	0	Median	12897000	6885800	6011100	0	0	0	4738700	2688400	2050300	4400400	2146200	2254200	3757900	2051300	1706600	44373	2204	41772	268890;268891;268892;268893;268894;268895	360659;360660;360661;360662;360663;360664	360661	2326		6	
SASPYHGFTIVNR	0	Unmodified	1447.7208	0.72081203	4904	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			49.789	41.177	3	0.052812	22802	160513_QHF_FH_JSI10Kac_6	38.178	28.983			0.43614	0.51489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43614	0.51489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16805000	13567000	3238600	0	0	0	16805000	13567000	3238600	0	0	0	0	0	0	44374	4904	41773	268896	360665	360665			1	
SASQGALTSPSVSFSNHR	0	Unmodified	1831.8813	0.88128843	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				39.287	37.796	3	9.8431E-05	30847	160511_QHF_FH_JSI9i_3	80.316	67.18			1.4255	1.1691	16.702	2	2	Median	1.4255	1.1691	16.702	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45018000	19223000	25795000	45018000	19223000	25795000	0	0	0	0	0	0	0	0	0	44375	2948	41774	268897;268898	360666;360667	360667			2	
SASSASSLFSPSSTLFSSSR	0	Unmodified	1991.9436	0.94361392	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			80.021	78.99	2	1.0321E-32	66208	160511_QHF_FH_JSI10i_3	185.87	169.34			0.85757	0.86702	9.876	4	0	Median	1.0904	0.92126	4.6247	2	0	Median	0.67272	0.7973	7.8986	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70590000	36833000	33757000	34428000	14768000	19660000	36162000	22065000	14098000	0	0	0	0	0	0	44376	2555	41775	268899;268900;268901;268902	360668;360669;360670;360671;360672;360673	360669			6	
SASSDTSEELNSQDSPPK	1	Unmodified	1877.8127	0.81265932	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.511	22.373	2	1.103E-10	19402	160511_QHF_FH_JSI11i_1	105.03	80.737			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44377	198	41776	268903	360674	360674			1	
SASSGAEGDVSSEREP	0	Unmodified	1563.6649	0.66487288	3732	Q8TEA8	DTD1	D-tyrosyl-tRNA(Tyr) deacylase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.801	15.332	2	6.9065E-65	12696	160511_QHF_FH_JSI9i_1	235.73	223.15			1.0056	0.99367	8.5012	4	0	Median	1.3352	1.0738	NaN	1	0	Median	0.75111	0.89384	NaN	1	0	Median	0.99234	0.9469	NaN	1	0	Median	1.0191	1.0428	NaN	1	0	Median	226460000	126760000	99697000	60183000	30219000	29965000	60811000	37971000	22840000	38607000	18184000	20422000	66858000	40388000	26470000	44378	3732	41777	268904;268905;268906;268907	360675;360676;360677;360678;360679;360680;360681;360682	360682			8	
SASSLLEQRPK	1	Acetyl (Protein N-term)	1256.6725	0.67246486	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	4	2	44.331	42.409	2	2.2879E-23	38560	160511_QHF_FH_JSI12i_1	90.906	74.689			1.0639	1.0257	127.48	9	2	Median	3.1081	2.5746	137.57	2	1	Median	0.89935	1.0841	18.336	2	0	Median	1.0334	1.0573	4.1202	3	0	Plateau	5.3371	5.6554	260.59	2	1	Median	551250000	249100000	302150000	78653000	22718000	55935000	144690000	74338000	70348000	208770000	96894000	111880000	119140000	55152000	63992000	44379	5654	41778	268908;268909;268910;268911;268912;268913;268914;268915;268916;268917	360683;360684;360685;360686;360687;360688;360689;360690;360691;360692;360693;360694;360695;360696	360687			13	
SASSSAAGSPGGLTSLQQQK	1	Unmodified	1860.9177	0.91773352	3645	Q8NEZ2	VPS37A	Vacuolar protein sorting-associated protein 37A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	35.154	34.621	2	8.0943E-68	31145	160511_QHF_FH_JSI11i_1	187.57	165.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44380	3645	41779	268918;268919;268920;268921;268922	360697;360698;360699;360700;360701	360698			5	
SASSSPETR	0	Unmodified	920.41994	0.41993856	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		1.3243	1.2276	2	0.052405	628	160511_QHF_FH_JSI11i_1	35.295	24.422			1.2871	1.2416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2871	1.2416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12360000	5368300	6991700	0	0	0	0	0	0	12360000	5368300	6991700	0	0	0	44381	5474	41780	268923	360702	360702			1	
SASTTAPK	1	Unmodified	761.39193	0.3919329	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		4.7829	-2.5394	2	0.01765	1504	160513_QHF_FH_JSI11Kac_3	58.815	15.946			0.85616	0.94303	29.556	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64053	0.76518	NaN	1	0	Median	1.1444	1.1622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8400600	4153200	4247400	0	0	0	2615300	1727100	888250	5785300	2426100	3359200	0	0	0	44382	4564	41781	268924;268925	360703	360703			1	
SASVDAEK	1	Unmodified	805.38176	0.38176214	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	5.44	3				3	3				1	3	2	3	6.2167	1.2547	2	0.00057319	2365	160513_QHF_FH_JSI11Kac_3	110.41	54.732			0.9374	0.92516	21.62	9	0	Median	1.1221	0.92516	NaN	1	0	Median	0.90354	1.0364	25.532	3	0	Median	0.84164	0.82051	15.932	2	0	Median	0.9374	1.0112	26.147	3	0	Median	1916400000	872000000	1044400000	470780000	162730000	308050000	680470000	344170000	336300000	28296000	17455000	10841000	736870000	347640000	389230000	44383	2456;2457	41782	268926;268927;268928;268929;268930;268931;268932;268933;268934	360704;360705;360706;360707;360708;360709;360710	360705			7	
SASVQGFFLNHYLSK	1	Unmodified	1696.8573	0.85730551	3530	Q8N4Q0	ZADH2	Zinc-binding alcohol dehydrogenase domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.396	71.33	3	2.5085E-05	39008	160513_QHF_FH_JSI10Kac_6	97.214	85.522			0.84111	0.97323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84111	0.97323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86273000	37903000	48370000	0	0	0	86273000	37903000	48370000	0	0	0	0	0	0	44384	3530	41783	268935	360711	360711			1	
SASVTASSESPVEIQNPYLHVEPEK	1	Unmodified	2697.3134	0.31335481	2458	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	66.769	66.436	3	1.3229E-08	60208	160511_QHF_FH_JSI10i_1	80.786	66.238			0.9081	1.0238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9081	1.0238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20620000	15611000	5008800	0	0	0	20620000	15611000	5008800	0	0	0	0	0	0	44385	2458	41784	268936;268937;268938	360712;360713;360714	360714			3	
SASVVSVISR	0	Acetyl (Protein N-term)	1045.5768	0.57677356	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	3.5	1			3	3	2				2	3	3	1	64.382	55.698	2	7.5973E-25	56439	160511_QHF_FH_JSI9i_1	160.59	119.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44386	1964	41785	268939;268940;268941;268942;268943;268944;268945;268946;268947	360715;360716;360717;360718;360719;360720;360721;360722;360723	360719			9	
SASVVSVISR	0	Unmodified	1003.5662	0.56620887	1964	P61803	DAD1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13	4.93		1						4	1	2	2	1	1	47.684	39.059	2	2.6221E-06	20048	160513_QHF_FH_JSI10Kac_5	120.99	82.855			0.90704	0.91471	8.5465	6	0	Median	1.1028	0.92317	9.0341	2	0	Median	0.73658	0.88561	12.305	2	0	Median	1.0014	0.99743	NaN	1	0	Median	0.79198	0.862	NaN	1	0	Median	93180000	50878000	42302000	19771000	9297900	10473000	47990000	29211000	18779000	22404000	10685000	11719000	3015500	1684500	1330900	44387	1964	41785	268948;268949;268950;268951;268952;268953	360724;360725;360726;360727	360727			3	
SASYKPVFVTEITDDLHFYVQDVETGTQLEK	2	Unmodified	3558.7406	0.74061059	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1			By matching	By MS/MS	16	0									2			1	1	95.728	86.307	4	2.5107E-142	46889	160513_QHF_FH_JSI12Kac_6	254.65	244.02			0.96109	0.96975	27.596	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2376	1.1787	NaN	1	0	Median	0.74636	0.79783	NaN	1	0	Median	214550000	105090000	109460000	0	0	0	0	0	0	49872000	18250000	31623000	164680000	86843000	77834000	44388	3213	41786	268954;268955	360728;360729	360728			2	
SATAATAPPAAPAGEGGPPAPPPNLTSNRR	0	Acetyl (Protein N-term)	2835.4264	0.42636793	2047	P63027	VAMP2	Vesicle-associated membrane protein 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.07	55.28	3	1.171E-15	49007	160511_QHF_FH_JSI9i_1	83.362	76.002			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44389	2047	41787	268956;268957;268958;268959	360730;360731;360732;360733;360734	360734			5	
SATDADVVNSGWLVVGK	1	Unmodified	1716.8683	0.86826413	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	78.037	77.499	2	1.8292E-05	70618	160511_QHF_FH_JSI12i_1	85.813	77.902			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44390	3838	41788	268960	360735	360735			1	
SATDGNTSTTPPTSAK	1	Unmodified	1534.7111	0.71109479	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.932	11.529	2	3.9559E-15	9398	160511_QHF_FH_JSI12i_1	196.5	156.58			1.179	1.25	22.242	4	2	Median	1.783	1.5239	NaN	1	1	Median	0.94117	1.111	NaN	1	1	Median	1.4769	1.4063	NaN	1	0	Median	0.90061	0.93642	NaN	1	0	Median	181580000	91973000	89607000	31955000	12559000	19396000	46077000	26075000	20002000	39594000	17780000	21814000	63955000	35559000	28395000	44391	2457	41789	268961;268962;268963;268964	360736;360737;360738;360739;360740;360741	360739			6	
SATEEDTIR	0	Unmodified	1020.4724	0.47236807	4998	Q9NU23	LYRM2	LYR motif-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.541	10.157	2	0.00085786	7811	160511_QHF_FH_JSI11i_1	84.213	67.436			1.0105	0.93543	19.7	4	3	Median	1.2336	1.025	NaN	1	0	Median	0.6747	0.78844	NaN	1	1	Median	1.2707	1.2255	NaN	1	1	Median	0.82769	0.85372	NaN	1	1	Median	181200000	88640000	92563000	44518000	21551000	22967000	41729000	24352000	17377000	48164000	18703000	29461000	46792000	24034000	22758000	44392	4998	41790	268965;268966;268967;268968	360742;360743;360744;360745	360742			4	
SATEQSGTGIR	0	Unmodified	1105.5364	0.53636531	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	4	2	8.605	7.4063	2	6.1562E-38	5850	160511_QHF_FH_JSI10i_1	205.09	166.3			0.83118	0.76903	26.435	9	2	Median	1.0527	0.88416	19.729	2	0	Median	0.66143	0.80999	42.634	2	0	Median	0.7423	0.72886	31.978	3	2	Median	0.69219	0.75166	32.255	2	0	Median	2593300000	1517500000	1075900000	565440000	284520000	280920000	744680000	491970000	252710000	737500000	423850000	313650000	545720000	317120000	228600000	44393	736	41791	268969;268970;268971;268972;268973;268974;268975;268976;268977;268978	360746;360747;360748;360749;360750;360751;360752;360753;360754	360749			9	
SATHLLR	0	Unmodified	796.45554	0.45553621	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS				3	0			1							1				10.945	10.234	2	0.012047	7766	160511_QHF_FH_JSI9i_3	69.998	33.813			1.2156	0.98362	NaN	1	0	Median	1.2156	0.98362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54997000	25504000	29493000	54997000	25504000	29493000	0	0	0	0	0	0	0	0	0	44394	2986	41792	268979	360755	360755			1	
SATLASIDAELQK	1	Unmodified	1345.7089	0.70890994	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	62.29	61.389	2	5.4201E-05	52612	160511_QHF_FH_JSI12i_2	115.91	104.75			1.0314	1.1281	10.418	3	3	Median	1.3144	1.1685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.983	0.96107	NaN	1	1	Median	1.0314	1.1281	NaN	1	1	Median	164050000	84253000	79792000	46380000	20210000	26170000	0	0	0	55787000	25030000	30757000	61878000	39013000	22865000	44395	1400	41793	268980;268981;268982	360756;360757;360758	360757			3	
SATLLQLITK	1	Unmodified	1086.6649	0.66486028	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.54		4	4					3	4	4	4	4	3	83.822	79.158	2	8.6463E-34	73988	160511_QHF_FH_JSI11i_3	202.36	127.15			0.93989	0.94821	10.766	15	0	Median	1.0627	0.92588	7.6673	4	0	Median	0.80021	0.94873	5.3527	4	0	Median	1.1473	1.082	14.846	4	0	Median	0.92182	0.9814	2.562	3	0	Median	1788800000	877570000	911200000	491750000	211090000	280660000	486670000	263380000	223290000	560370000	279000000	281380000	249980000	124100000	125880000	44396	133	41794	268983;268984;268985;268986;268987;268988;268989;268990;268991;268992;268993;268994;268995;268996;268997	360759;360760;360761;360762;360763;360764;360765;360766;360767;360768;360769;360770;360771;360772;360773;360774;360775;360776;360777;360778;360779;360780;360781;360782;360783;360784;360785;360786;360787;360788;360789;360790	360762			32	
SATMVAAYLIQVHK	1	Unmodified	1530.8228	0.82283426	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	76.656	68.634	2;3	1.4636E-24	37910	160513_QHF_FH_JSI10Kac_6	203.02	168.49			1.0152	1.0134	38.665	5	1	Median	1.182	1.0134	NaN	1	0	Median	0.62499	0.74884	68.394	2	1	Median	1.174	1.1071	NaN	1	0	Median	0.91582	0.97151	NaN	1	0	Median	1044000000	516910000	527050000	230030000	113220000	116810000	571600000	285900000	285700000	160620000	79254000	81366000	81697000	38534000	43163000	44397	3764	41795	268998;268999;269000;269001;269002	360791;360792;360793;360794;360795;360796;360797;360798	360798			8	
SATNLPQLK	1	Unmodified	970.54475	0.54474515	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	34.701	33.789	2	0.0046387	30645	160511_QHF_FH_JSI12i_1	68.95	39.788			0.93969	0.87952	14.449	2	0	Median	0.94559	0.79409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93384	0.97413	NaN	1	0	Median	86469000	41978000	44491000	37975000	16913000	21062000	0	0	0	0	0	0	48494000	25064000	23430000	44398	1694	41796	269003;269004	360799;360800	360800			2	
SATQFTGR	0	Unmodified	866.42463	0.42463001	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.13		4	2				2	3		2	1	4	4	13.086	9.2995	2	0.00051218	8668	160511_QHF_FH_JSI11i_3	105.81	82.233			0.85666	0.83016	18.63	10	2	Median	1.1002	0.93492	20.102	2	0	Median	0.64383	0.79172	NaN	1	0	Median	0.85666	0.85929	20.32	4	2	Median	0.72194	0.80972	25.285	3	0	Median	2537900000	1339600000	1198400000	510720000	255300000	255420000	506370000	302880000	203490000	754610000	384730000	369880000	766220000	396660000	369560000	44399	3623	41797	269005;269006;269007;269008;269009;269010;269011;269012;269013;269014;269015	360801;360802;360803;360804;360805;360806;360807;360808;360809;360810;360811;360812;360813;360814;360815;360816	360801			16	
SATSPEGK	1	Unmodified	775.3712	0.37119746	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	5.46	20	10	7	1	15	37				32	14	25	19	3.056	-2.805	2	2.0826E-09	728	160513_QHF_FH_JSI11Kac_3	150.84	81.922			1.2702	1.144	72.508	80	16	Median	1.4023	1.1538	52.124	30	7	Median	1.3375	1.5631	74.714	11	1	Median	0.99605	0.98583	97.523	21	7	Median	1.0838	1.1898	69.4	18	1	Median	26767000000	13429000000	13338000000	7948800000	3325000000	4623800000	5894700000	3516400000	2378300000	5827700000	2802700000	3025000000	7095500000	3784500000	3311100000	44400	1033	41798	269016;269017;269018;269019;269020;269021;269022;269023;269024;269025;269026;269027;269028;269029;269030;269031;269032;269033;269034;269035;269036;269037;269038;269039;269040;269041;269042;269043;269044;269045;269046;269047;269048;269049;269050;269051;269052;269053;269054;269055;269056;269057;269058;269059;269060;269061;269062;269063;269064;269065;269066;269067;269068;269069;269070;269071;269072;269073;269074;269075;269076;269077;269078;269079;269080;269081;269082;269083;269084;269085;269086;269087;269088;269089;269090;269091;269092;269093;269094;269095;269096;269097;269098;269099;269100;269101;269102;269103;269104;269105	360817;360818;360819;360820;360821;360822;360823;360824;360825;360826;360827;360828;360829;360830;360831;360832;360833;360834;360835;360836;360837;360838;360839;360840;360841;360842;360843;360844;360845;360846;360847;360848;360849;360850;360851;360852;360853;360854;360855;360856;360857;360858;360859;360860;360861;360862;360863;360864;360865;360866;360867;360868;360869;360870;360871;360872;360873;360874;360875;360876;360877;360878;360879;360880;360881;360882;360883;360884;360885;360886;360887;360888;360889;360890;360891;360892;360893;360894;360895;360896;360897;360898;360899;360900;360901;360902;360903;360904;360905;360906;360907;360908;360909;360910;360911;360912;360913;360914;360915;360916;360917;360918;360919;360920;360921;360922;360923;360924;360925;360926;360927;360928;360929;360930;360931;360932;360933	360845			117	
SATSPEGKK	2	Acetyl (K)	945.47673	0.47672516	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		8.0936	0.77639	2	0.0072451	3227	160513_QHF_FH_JSI11Kac_3	77.732	49.558			0.031899	0.030686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.031899	0.030686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1734300	1699500	34841	0	0	0	0	0	0	1734300	1699500	34841	0	0	0	44401	1033	41799	269106	360934	360934	853		1	
SATSSSPGSPLHSLETSL	0	Unmodified	1756.8479	0.84792262	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	68.248	67.628	2	1.4079E-11	58853	160511_QHF_FH_JSI11i_2	149.23	0			1.0705	1.0549	20.321	4	2	Median	1.0814	0.84937	NaN	1	0	Median	1.1881	1.3917	NaN	1	1	Median	1.0596	1.0793	NaN	1	0	Median	1.0081	1.0311	NaN	1	1	Median	195640000	87471000	108170000	25961000	11605000	14356000	88003000	32844000	55160000	57375000	30354000	27021000	24306000	12669000	11637000	44402	1168	41800	269107;269108;269109;269110	360935;360936;360937;360938;360939;360940	360940			6	
SATSSSVSNVVITK	1	Unmodified	1378.7304	0.73037367	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	4	2	2	39.376	34.574	2	6.4298E-10	31019	160511_QHF_FH_JSI12i_1	149.41	127.66			0.7958	0.86556	13.699	8	2	Median	0.76462	0.62386	NaN	1	1	Median	0.74741	0.84114	7.0786	3	1	Median	0.88411	0.85391	9.2828	2	0	Median	0.86816	0.92925	5.9942	2	0	Median	206290000	115120000	91174000	34570000	19910000	14661000	59113000	36466000	22648000	60854000	31014000	29839000	51755000	27729000	24027000	44403	1537	41801	269111;269112;269113;269114;269115;269116;269117;269118;269119	360941;360942;360943;360944;360945;360946;360947;360948;360949;360950;360951;360952;360953	360943			13	
SATSVDQRPK	1	Acetyl (Protein N-term)	1129.5728	0.57275081	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	13.452	10.715	2	1.8437E-34	9153	160511_QHF_FH_JSI10i_1	123.72	112.5			3.8057	3.488	180.52	6	3	Median	16.826	13.75	NaN	1	1	Median	0.69564	0.81693	11.287	2	0	Median	4.6563	4.5133	239.01	2	1	Median	28.413	29.431	NaN	1	1	Median	617010000	167540000	449470000	129690000	10116000	119580000	246330000	143050000	103280000	105600000	9014800	96580000	135390000	5358700	130030000	44404	3291	41802	269120;269121;269122;269123;269124;269125	360954;360955;360956;360957;360958;360959	360958			6	
SATVIDHLR	0	Unmodified	1010.5509	0.55089316	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	25.218	25.202	3	0.00054496	21548	160511_QHF_FH_JSI11i_3	74.376	32.5			0.76029	0.74519	26.746	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96011	0.90033	NaN	1	0	Median	0.60205	0.61678	NaN	1	0	Median	111880000	56374000	55511000	0	0	0	0	0	0	45448000	18866000	26582000	66437000	37508000	28928000	44405	4736	41803	269126;269127	360960;360961	360961			2	
SATYVNTEGR	0	Unmodified	1096.5149	0.51490158	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	12.715	12.262	2	1.4992E-07	9969	160511_QHF_FH_JSI10i_1	119.75	105.08			0.89667	0.92041	13.271	5	2	Median	1.0043	0.81085	NaN	1	0	Median	0.85733	1.0184	10.172	2	1	Median	0.80758	0.78601	NaN	1	0	Median	0.91009	0.92041	NaN	1	1	Median	717970000	396160000	321820000	179850000	97415000	82431000	187480000	106750000	80731000	219580000	129800000	89780000	131070000	62191000	68878000	44406	1306	41804	269128;269129;269130;269131;269132	360962;360963;360964;360965;360966;360967;360968	360965			7	
SAVADKHELLSLASSNHLGK	2	Unmodified	2076.0964	0.096366586	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		54.745	53.495	3;4	9.2336E-06	43998	160511_QHF_FH_JSI9i_3	70.907	56.866			1.1272	0.92083	26.043	5	3	Median	1.3926	1.1385	12.204	3	1	Plateau	0.80267	0.92083	NaN	1	1	Median	0.6308	0.59195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	356270000	156530000	199730000	163280000	55999000	107280000	72715000	33961000	38754000	120280000	66575000	53701000	0	0	0	44407	283	41805	269133;269134;269135;269136;269137;269138	360969;360970;360971;360972;360973;360974;360975	360972			7	
SAVAGFLLLLK	1	Unmodified	1130.7063	0.70633117	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	2	1	1	97.42	93.361	2	9.1014E-12	47448	160513_QHF_FH_JSI9Kac_6	145.17	127.14			0.95008	0.88612	23.154	6	1	Median	0.95008	0.79383	12.042	2	0	Median	0.72323	0.83912	11.22	2	0	Median	1.0562	0.96096	NaN	1	0	Median	1.3304	1.4039	NaN	1	1	Median	434430000	212000000	222430000	145140000	70897000	74243000	163260000	87336000	75923000	48734000	20492000	28242000	77296000	33279000	44017000	44408	5034	41806	269139;269140;269141;269142;269143;269144	360976;360977;360978;360979;360980;360981;360982;360983	360979			7	
SAVDEDRK	1	Unmodified	918.44067	0.44067401	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	3.8705	3.4888	2	8.8672E-10	1934	160511_QHF_FH_JSI12i_2	160.63	120.53			1.3835	1.438	69.609	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4916	2.3525	NaN	1	1	Median	0.76822	0.87904	NaN	1	0	Median	63803000	36329000	27474000	0	0	0	0	0	0	16732000	4511900	12220000	47071000	31817000	15254000	44409	2454	41807	269145;269146;269147;269148	360984;360985;360986;360987	360984			4	
SAVDYNTCAGVWSQDK	1	Unmodified	1799.7785	0.77846285	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		49.221	48.801	2	2.382E-11	44178	160511_QHF_FH_JSI11i_1	110.29	99.388			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7039700	7039700	0	0	0	0	7039700	7039700	0	0	0	0	0	0	0	44410	5654	41808	269149;269150	360988;360989	360988			2	
SAVEAER	0	Unmodified	760.37153	0.37153181	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	3.56	9	2					1			3	2	4	3	5.4214	4.4835	2	0.00087679	2993	160511_QHF_FH_JSI10i_1	127.12	40.251			1.0937	1.1121	23.82	12	1	Median	1.4674	1.2321	9.6242	3	0	Median	0.84387	0.99636	2.869	2	0	Median	1.03	1.0054	10.682	4	0	Median	0.96002	1.0107	42.259	3	1	Plateau	17634000000	8711000000	8923200000	2723300000	1199600000	1523700000	4558400000	2498700000	2059700000	5164000000	2397500000	2766500000	5188400000	2615200000	2573200000	44411	816	41809	269151;269152;269153;269154;269155;269156;269157;269158;269159;269160;269161;269162	360990;360991;360992;360993;360994;360995;360996;360997;360998	360994			9	
SAVEAQNEVTENPK	1	Unmodified	1514.7213	0.72126554	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	2	3	2	23.53	20.607	2	9.2901E-66	17624	160511_QHF_FH_JSI10i_1	234.17	173.65			1.028	1.0551	35.71	6	1	Median	1.246	1.0277	NaN	1	0	Median	0.65618	0.73795	54.28	2	1	Median	1.2849	1.2553	16.585	2	0	Median	0.78253	0.80712	NaN	1	0	Median	755530000	375810000	379720000	156460000	67737000	88724000	205510000	109020000	96488000	201400000	98654000	102750000	192160000	100400000	91757000	44412	2804	41810	269163;269164;269165;269166;269167;269168;269169;269170	360999;361000;361001;361002;361003;361004;361005;361006;361007;361008;361009;361010;361011	361007			13	
SAVEDEGLK	1	Unmodified	946.46074	0.46074075	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	5.6	4	3	1		3	4	1			3	5	4	4	18.895	14.314	2	1.2039E-16	5561	160513_QHF_FH_JSI9Kac_3	169.12	105.56			0.90079	0.94106	17.164	16	3	Median	1.1964	1.0135	7.7974	3	1	Median	0.62667	0.7487	18.531	5	1	Median	0.95485	0.93246	21.109	4	0	Median	0.87175	0.9233	13.815	4	1	Median	24239000000	13048000000	11191000000	5841800000	2735400000	3106500000	6487600000	3769200000	2718400000	5317700000	2787100000	2530700000	6591700000	3756700000	2835000000	44413	954	41811	269171;269172;269173;269174;269175;269176;269177;269178;269179;269180;269181;269182;269183;269184;269185;269186	361012;361013;361014;361015;361016;361017;361018;361019;361020;361021;361022;361023;361024;361025;361026;361027;361028;361029;361030	361018			19	
SAVELVQEFLNDLNK	1	Unmodified	1717.8887	0.88866522	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.87	102.87	3	0.0019691	91988	160511_QHF_FH_JSI11i_3	58.577	51.36			1.1864	1.1006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1864	1.1006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68435000	28450000	39985000	0	0	0	0	0	0	68435000	28450000	39985000	0	0	0	44414	4794	41812	269187	361031	361031			1	
SAVESGQADDER	0	Unmodified	1262.5375	0.53748752	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	7.4622	5.3565	2	2.4224E-05	4647	160511_QHF_FH_JSI11i_1	109.72	94.883			0.9559	0.95427	13.476	4	0	Median	1.402	1.1471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90701	0.87802	8.0771	2	0	Median	0.95184	0.97957	NaN	1	0	Median	164640000	75277000	89360000	54737000	22487000	32250000	0	0	0	62148000	28936000	33212000	47752000	23854000	23898000	44415	2082	41813	269188;269189;269190;269191	361032;361033;361034;361035;361036	361032			5	
SAVESGQADDERVR	0	Unmodified	1517.707	0.70701246	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.447	1	8	1							2	3	2	3	10.521	10.111	2;3	4.1306E-15	7584	160511_QHF_FH_JSI11i_2	161.21	151.41			0.95835	0.97883	13.771	10	1	Median	1.3385	1.1337	31.265	2	1	Median	0.78898	0.97231	7.7338	3	0	Median	1.0809	1.0893	5.0471	2	0	Median	0.92757	0.97156	5.7369	3	0	Median	545680000	286000000	259680000	94915000	40310000	54605000	158600000	87566000	71031000	138210000	75003000	63208000	153960000	83125000	70835000	44416	2082	41814	269192;269193;269194;269195;269196;269197;269198;269199;269200;269201	361037;361038;361039;361040;361041;361042;361043;361044;361045;361046;361047;361048	361044			12	
SAVGAATPYLHHPGDSHSGR	0	Acetyl (Protein N-term)	2057.9667	0.9667494	4600	Q9GZQ3	COMMD5	COMM domain-containing protein 5	yes	yes	0	1	0	0				By MS/MS	3	0			1										1	36.424	36.279	3	0.00048137	30805	160511_QHF_FH_JSI12i_3	60.062	50.405			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44417	4600	41815	269202	361049	361049			1	
SAVGFDYQGK	1	Unmodified	1070.5033	0.50327426	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.71	6.32	3	1					3				2	2	3	37.171	32.53	2	1.3981E-05	29549	160511_QHF_FH_JSI12i_1	101.46	78.772			1.0763	1.167	22.321	7	1	Median	NaN	NaN	NaN	0	0	Median	0.99912	1.1882	23.812	2	0	Median	1.0519	1.0272	19.945	2	0	Median	1.0763	1.167	29.96	3	1	Median	829370000	395110000	434260000	0	0	0	298490000	146100000	152400000	279620000	123210000	156400000	251260000	125800000	125460000	44418	2522	41816	269203;269204;269205;269206;269207;269208;269209	361050;361051;361052;361053;361054;361055;361056	361052			7	
SAVGFEYQGK	1	Unmodified	1084.5189	0.51892433	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.21	2	4	1				3	2		3	3	4	2	35.313	31.2	2	3.6528E-06	26358	160511_QHF_FH_JSI12i_2	126.07	110.41			1.0829	0.96845	78.212	11	2	Median	1.1015	0.95827	4.9742	3	0	Plateau	1.0829	1.2743	94.183	3	1	Median	1.2012	1.1776	114.17	3	1	Median	0.81112	0.88816	9.2024	2	0	Median	2047400000	543660000	1503700000	152540000	73737000	78803000	734930000	190790000	544140000	993450000	191360000	802090000	166430000	87782000	78652000	44419	2522	41817	269210;269211;269212;269213;269214;269215;269216;269217;269218;269219;269220;269221	361057;361058;361059;361060;361061;361062;361063;361064;361065;361066;361067;361068;361069;361070;361071;361072;361073;361074;361075;361076	361058			20	
SAVGHEYQSK	1	Unmodified	1104.52	0.51998696	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.7		8	2					1		2	2	3	4	6.1736	4.914	2;3	2.826E-14	3503	160511_QHF_FH_JSI11i_2	163.64	107.96			0.92813	1.0572	24.153	10	1	Median	1.4257	1.2244	15.584	2	0	Median	0.95303	1.1649	4.1167	2	0	Median	0.92511	0.95806	40.511	3	0	Median	0.82196	0.90191	11.663	3	1	Median	2351900000	1120100000	1231800000	382380000	155300000	227080000	534820000	257270000	277550000	1044000000	522330000	521640000	390720000	185200000	205520000	44420	2522	41818	269222;269223;269224;269225;269226;269227;269228;269229;269230;269231;269232	361077;361078;361079;361080;361081;361082;361083;361084;361085;361086;361087;361088;361089;361090;361091	361084			13	
SAVGHEYQSKLSK	2	Acetyl (K)	1474.7416	0.74160705	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	35.319	26.137	2;3	0.00059408	14775	160513_QHF_FH_JSI10Kac_6	68.809	61.265			1.2089	1.4543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2089	1.4543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13202000	10103000	3098700	0	0	0	6669700	3571000	3098700	3196800	3196800	0	3335100	3335100	0	44421	2522	41819	269233;269234;269235;269236	361092;361093;361094;361095;361096;361097	361097	2523;2524		6	
SAVGHVFSLEK	1	Unmodified	1172.619	0.61897272	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			42.402	40.881	3	0.0085047	34107	160511_QHF_FH_JSI10i_3	41.092	30.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44422	3033	41820	269237	361098	361098			1	
SAVGNAAHTSDR	0	Unmodified	1184.5534	0.55341235	1885	P56945	BCAR1	Breast cancer anti-estrogen resistance protein 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		6.1034	-3.4203	3	0.0069598	2062	160513_QHF_FH_JSI11Kac_5	59.116	49.684			1.1681	1.1222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1681	1.1222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2594800	1264200	1330600	0	0	0	0	0	0	2594800	1264200	1330600	0	0	0	44423	1885	41821	269238	361099	361099			1	
SAVLHSQSSSSSSR	0	Unmodified	1418.675	0.67498405	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				6.3196	-0.75103	3	0.043427	2142	160513_QHF_FH_JSI9Kac_6	18.832	15.881			0.9804	0.85486	NaN	1	0	Median	0.9804	0.85486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2861500	1350400	1511200	2861500	1350400	1511200	0	0	0	0	0	0	0	0	0	44424	3359	41822	269239	361100	361100			1	
SAVLISSK	1	Unmodified	803.47527	0.4752686	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.95	3	3	1			1	2	1		3	3	3	2	24.285	20.784	2	0.0074934	16840	160511_QHF_FH_JSI9i_3	59.35	32.096			0.76526	0.84303	27.586	11	2	Plateau	0.99189	0.84294	11.643	3	0	Median	0.7603	0.92219	36.771	3	1	Median	0.75078	0.74418	17.094	3	0	Plateau	1.1476	1.2072	41.987	2	1	Median	926370000	500750000	425620000	219650000	101410000	118240000	265080000	147800000	117280000	366270000	212750000	153530000	75364000	38791000	36573000	44425	1507	41823	269240;269241;269242;269243;269244;269245;269246;269247;269248;269249;269250	361101;361102;361103;361104;361105;361106;361107	361105			7	
SAVLQEAR	0	Unmodified	872.47158	0.4715802	5708;5234	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	4.52			1				3	1		1	1	1	2	18.359	11.857	2	0.0035616	8610	160513_QHF_FH_JSI11Kac_4	85.676	25.557			1.1707	0.99515	7.1031	4	0	Linear	1.2047	1.0036	NaN	1	0	Median	0.754	0.878	NaN	1	0	Median	1.0389	1.0316	NaN	1	0	Median	0.88908	0.9868	NaN	1	0	Median	87085000	41653000	45432000	35100000	13862000	21238000	10776000	5768000	5007500	29622000	15922000	13699000	11588000	6101100	5487100	44426	5708;5234	41824	269251;269252;269253;269254;269255	361108;361109;361110;361111;361112;361113;361114	361110			7	
SAVLSEPVLFLK	1	Unmodified	1301.7595	0.75948895	3108	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	88.243	87.441	2	1.5598E-07	76890	160511_QHF_FH_JSI11i_2	134.68	130.06			0.8696	0.94684	14.335	4	0	Median	1.4232	1.2188	NaN	1	0	Median	0.76126	0.90836	NaN	1	0	Median	0.97345	0.98695	NaN	1	0	Median	0.77683	0.89123	NaN	1	0	Median	214320000	120940000	93376000	8968500	3962400	5006100	64345000	40075000	24270000	75298000	42163000	33135000	65708000	34743000	30965000	44427	3108	41825	269256;269257;269258;269259;269260	361115;361116;361117;361118;361119;361120;361121	361119			7	
SAVPFLPVNPEYSATR	0	Unmodified	1746.8941	0.89408495	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	3	1	81.417	80.779	2	7.9594E-05	71077	160511_QHF_FH_JSI11i_2	88.021	71.389			0.85759	0.97028	15.752	6	0	Median	1.2117	0.99777	NaN	1	0	Median	0.69932	0.81806	21.96	2	0	Median	0.88226	0.86267	18.8	2	0	Median	0.93246	0.98981	NaN	1	0	Median	182670000	83559000	99111000	33733000	8024000	25709000	47413000	26292000	21121000	75060000	35448000	39612000	26464000	13795000	12669000	44428	5545	41826	269261;269262;269263;269264;269265;269266;269267;269268	361122;361123;361124;361125;361126;361127;361128;361129;361130;361131;361132;361133;361134	361131			13	
SAVPFNQYLPNK	1	Unmodified	1376.7089	0.70885036	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	63.528	63.122	2	0.00023634	54281	160511_QHF_FH_JSI12i_2	78.113	59.506			0.63653	0.68274	19.132	2	1	Median	NaN	NaN	NaN	0	0	Median	0.50678	0.59636	NaN	1	1	Median	0.7995	0.78165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90488000	54143000	36345000	0	0	0	46751000	30981000	15770000	43737000	23162000	20575000	0	0	0	44429	5463	41827	269269;269270;269271;269272	361135;361136;361137;361138	361136			4	
SAVPPGADK	1	Unmodified	840.43413	0.43413207	1595	P46783	RPS10	40S ribosomal protein S10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.85	11					7				2	4	5	7	11.467	8.1362	2	0.00014996	7289	160511_QHF_FH_JSI11i_1	89.355	68.055			0.92379	0.9551	10.56	14	4	Median	1.1682	0.95899	14.645	2	1	Median	0.8687	1.0251	9.4987	4	0	Median	0.98348	0.9551	10.191	4	1	Median	0.82183	0.8593	10.253	4	2	Median	3393000000	1775000000	1618000000	828180000	380120000	448060000	859380000	476040000	383340000	884180000	471710000	412470000	821250000	447170000	374080000	44430	1595	41828	269273;269274;269275;269276;269277;269278;269279;269280;269281;269282;269283;269284;269285;269286;269287;269288;269289;269290	361139;361140;361141;361142;361143;361144;361145;361146;361147;361148;361149;361150;361151;361152;361153;361154;361155;361156;361157;361158;361159;361160;361161;361162;361163;361164;361165;361166;361167;361168;361169;361170;361171;361172;361173;361174;361175;361176;361177;361178	361143			40	
SAVQKPPSTGSAPAIESVD	1	Unmodified	1839.9214	0.92142191	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.391	42.734	2	0.0016756	38557	160511_QHF_FH_JSI11i_1	87.447	71.691			0.73755	0.68953	12.233	4	1	Median	0.77141	0.64057	NaN	1	1	Median	0.73037	0.83867	NaN	1	0	Median	0.74481	0.72436	NaN	1	0	Median	0.63159	0.65637	NaN	1	0	Median	476860000	282100000	194750000	98392000	56738000	41653000	116930000	65210000	51722000	125600000	74234000	51369000	135930000	85921000	50007000	44431	5011	41829	269291;269292;269293;269294	361179;361180;361181;361182;361183;361184	361180			6	
SAVSTSVPTKPTENISK	2	Unmodified	1744.9207	0.92069363	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				33.3	32.258	3	0.036425	28063	160511_QHF_FH_JSI9i_2	34.094	16.177			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13201000	0	13201000	13201000	0	13201000	0	0	0	0	0	0	0	0	0	44432	2984	41830	269295	361185	361185			1	
SAVTTVVNPK	1	Unmodified	1014.571	0.5709599	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.19	4	4	3		1	3	1			3	4	6	3	27.566	24.109	2	1.5E-11	20640	160511_QHF_FH_JSI9i_2	153.08	103.66			0.95207	1.0081	11.59	15	1	Median	0.95207	0.95256	20.601	3	0	Plateau	0.77268	0.91042	8.6205	4	1	Median	1.0503	1.0472	3.279	5	0	Median	0.98392	1.0573	9.8787	3	0	Plateau	2920900000	1546700000	1374200000	742180000	346450000	395720000	648350000	396450000	251890000	721410000	383510000	337900000	808940000	420310000	388640000	44433	841	41831	269296;269297;269298;269299;269300;269301;269302;269303;269304;269305;269306;269307;269308;269309;269310;269311	361186;361187;361188;361189;361190;361191;361192;361193;361194;361195;361196;361197;361198;361199;361200;361201;361202;361203;361204;361205;361206;361207;361208	361202			23	
SAVTTVVNPKYEGK	2	Acetyl (K)	1533.8039	0.80387296	841	P05556	ITGB1	Integrin beta-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						6	2				3	3	2	54.787	45.151	2;3	8.8012E-07	24507	160513_QHF_FH_JSI11Kac_3	110.66	83.18			0.75421	0.4371	43.31	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75421	0.88482	NaN	1	0	Median	0.42652	0.41759	NaN	1	0	Median	0.79876	0.88352	NaN	1	0	Median	21949000	15340000	6608800	0	0	0	4268200	2409800	1858400	11046000	8478300	2567700	6634600	4451900	2182700	44434	841	41832	269312;269313;269314;269315;269316;269317;269318;269319	361209;361210;361211;361212;361213;361214;361215;361216;361217;361218	361210	494		10	
SAVVEMLIMR	0	Unmodified	1147.6093	0.60933601	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			80.042	76.538	2	4.0864E-05	64766	160511_QHF_FH_JSI9i_3	94.692	75.713			1.0454	1.0223	9.7025	2	0	Median	1.1815	0.95448	NaN	1	0	Median	0.92499	1.0949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120360000	54803000	65560000	31107000	16550000	14557000	89256000	38254000	51003000	0	0	0	0	0	0	44435	2403	41833	269320;269321	361219;361220;361221	361219			2	
SAWAMYFEK	1	Unmodified	1131.5059	0.5059168	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.718	66.034	2	0.0005307	35232	160513_QHF_FH_JSI9Kac_6	93.649	76.418			1.0294	1.0185	13.09	4	0	Median	0.98977	0.85435	NaN	1	0	Median	0.82405	0.98298	NaN	1	0	Median	1.1105	1.0552	NaN	1	0	Median	1.0706	1.1665	NaN	1	0	Median	213240000	94446000	118800000	48850000	19252000	29598000	97709000	47322000	50387000	51781000	22751000	29029000	14903000	5120800	9782500	44436	4621	41834	269322;269323;269324;269325	361222;361223;361224;361225;361226;361227;361228	361224			7	
SAWLSGYENPVVSR	0	Unmodified	1563.7682	0.76815616	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	65.544	65.259	2	4.808E-40	56320	160511_QHF_FH_JSI12i_3	203.61	179.27			1.142	1.0874	25.011	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90893	0.8928	27.882	2	0	Median	1.1623	1.1655	NaN	1	0	Median	294770000	154260000	140510000	0	0	0	0	0	0	189100000	103360000	85735000	105670000	50898000	54776000	44437	1035	41835	269326;269327;269328;269329	361229;361230;361231;361232;361233;361234	361233			6	
SAWQTLNEFAR	0	Unmodified	1321.6415	0.64149908	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	66.303	65.708	2	5.9766E-08	53905	160511_QHF_FH_JSI9i_3	125.97	105.64			0.26013	0.21595	30.511	3	2	Median	0.26013	0.21595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33906	0.3238	NaN	1	1	Median	0.17235	0.1781	NaN	1	1	Median	290830000	234190000	56633000	74684000	48544000	26140000	0	0	0	82489000	64755000	17734000	133650000	120890000	12760000	44438	5755	41836	269330;269331;269332	361235;361236;361237	361236			3	
SAWSSAQVK	1	Unmodified	962.48214	0.48214489	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	20.717	19.582	2	0.029619	16135	160511_QHF_FH_JSI12i_2	48.283	30.297			1.0306	1.1578	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0306	1.1578	NaN	1	1	Median	15358000	9322700	6035000	0	0	0	0	0	0	0	0	0	15358000	9322700	6035000	44439	3122	41837	269333	361238	361238			1	
SAYALCTFALSTGDPSQPVR	0	Unmodified	2140.0259	0.02590376	4532	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	78.8	77.883	2;3	2.4568E-12	67249	160511_QHF_FH_JSI12i_2	134.21	119.65			1.2207	1.2671	29.638	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95592	0.94194	39.952	2	1	Median	1.2207	1.2997	1.6067	2	1	Median	78305000	41142000	37163000	0	0	0	0	0	0	50941000	28934000	22007000	27364000	12208000	15155000	44440	4532	41838	269334;269335;269336;269337	361239;361240;361241	361240			3	
SAYALGGLGSGICPNR	0	Unmodified	1591.7777	0.77767498	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	2	2	60.829	59.959	2	3.8877E-27	52091	160511_QHF_FH_JSI11i_2	231.67	198.45			0.88711	1.0395	29.676	8	4	Median	1.5877	1.341	NaN	1	1	Median	0.86266	0.99454	3.5646	3	2	Plateau	0.72812	0.71595	8.7154	2	1	Median	1.2724	1.3546	35.006	2	0	Median	494110000	266510000	227600000	51289000	18343000	32946000	189100000	110130000	78974000	150800000	91271000	59529000	102920000	46770000	56149000	44441	1372	41839	269338;269339;269340;269341;269342;269343;269344;269345;269346	361242;361243;361244;361245;361246;361247;361248;361249;361250;361251	361248			10	
SAYALGGLGSGICPNRETLMDLSTK	1	Unmodified	2610.2782	0.27817206	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		84.911	84.142	3	2.4376E-11	74816	160511_QHF_FH_JSI10i_2	95.71	87.998			0.84247	0.89665	14.891	4	1	Median	1.1531	0.96669	NaN	1	0	Median	0.78098	0.9274	15.405	2	0	Median	0.78641	0.74292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114430000	55519000	58907000	19278000	8157800	11121000	72511000	36759000	35752000	22638000	10603000	12035000	0	0	0	44442	1372	41840	269347;269348;269349;269350	361252;361253;361254;361255;361256;361257;361258;361259;361260	361259			9	
SAYCPYSHFPVGAALLTQEGR	0	Unmodified	2323.1056	0.10555106	1392	P32320	CDA	Cytidine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			78.152	77.09	3	8.6568E-14	64616	160511_QHF_FH_JSI10i_3	125.28	122.18			1.5068	1.1035	18.544	4	0	Linear	1.8747	1.5849	9.0867	2	0	Median	1.0592	1.2911	22.993	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	193660000	91685000	101970000	71364000	26353000	45010000	122290000	65331000	56961000	0	0	0	0	0	0	44443	1392	41841	269351;269352;269353;269354	361261;361262;361263;361264;361265	361261			5	
SAYDSTMETMNYAQIR	0	Oxidation (M)	1895.803	0.80296304	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	48.042	47.411	2	5.8041E-30	43020	160511_QHF_FH_JSI12i_1	191.26	184.6			1.2973	1.2056	18.745	5	3	Median	1.4144	1.2056	NaN	1	1	Median	1.113	1.303	21.622	2	2	Median	1.5592	1.4964	NaN	1	0	Median	0.9485	0.98513	NaN	1	0	Median	199350000	96031000	103320000	28587000	11770000	16817000	85436000	42153000	43282000	31935000	15219000	16716000	53390000	26887000	26502000	44444	1798	41842	269355;269356;269357;269358;269359;269360;269361;269362	361266;361267;361268;361269;361270;361271;361272;361273;361274;361275	361269		1478;1479	10	
SAYDSTMETMNYAQIR	0	2 Oxidation (M)	1911.7979	0.79787766	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	2	0				By MS/MS	13	0						1							1	47.002	38.061	2	0.029001	20909	160513_QHF_FH_JSI12Kac_3	32.606	29.074			0.85974	0.89064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85974	0.89064	NaN	1	0	Median	1209500	617220	592280	0	0	0	0	0	0	0	0	0	1209500	617220	592280	44445	1798	41842	269363	361276	361276		1478;1479	1	
SAYEEQR	0	Unmodified	881.38791	0.38791015	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	3	2	5.6426	2.3043	2	0.0008273	3172	160511_QHF_FH_JSI10i_1	127.84	95.373			1.087	0.99994	9.6007	7	0	Median	1.2086	0.99079	NaN	1	0	Median	1.087	1.2809	NaN	1	0	Median	1.1148	1.0686	5.8893	3	0	Median	0.94643	0.99832	0.22879	2	0	Median	1943700000	922490000	1021200000	376020000	169750000	206270000	533930000	245010000	288930000	498950000	237320000	261630000	534760000	270410000	264350000	44446	2502	41843	269364;269365;269366;269367;269368;269369;269370	361277;361278;361279;361280;361281;361282	361278			6	
SAYEFSETESMLK	1	Unmodified	1520.6705	0.67047553	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	1	2	2	62.194	61.349	2	1.7142E-30	55975	160511_QHF_FH_JSI12i_1	185.77	156.81			1.1726	1.1323	28.289	8	3	Median	1.413	1.1585	42.585	3	0	Median	0.80704	0.98142	NaN	1	1	Median	1.333	1.3115	24.013	2	1	Median	1.0024	1.0834	24.644	2	1	Median	1124700000	543580000	581160000	322470000	158280000	164180000	90253000	50682000	39570000	381920000	169360000	212560000	330110000	165250000	164850000	44447	943	41844	269371;269372;269373;269374;269375;269376;269377;269378	361283;361284;361285;361286;361287;361288;361289;361290;361291;361292	361285			8	
SAYEFSETESMLK	1	Oxidation (M)	1536.6654	0.66539015	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	1	0		By MS/MS		By MS/MS	14	0							2				1		1	57.269	46.63	2	0.0010185	26289	160513_QHF_FH_JSI12Kac_4	75.294	59.403			0.89511	0.98432	35.053	2	1	Median	NaN	NaN	NaN	0	0	Median	0.68705	0.76823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1662	1.2612	NaN	1	0	Median	3136100	1729200	1406900	0	0	0	1321700	878280	443390	0	0	0	1814400	850950	963470	44448	943	41844	269379;269380	361293;361294;361295	361294		521	3	
SAYESQPIR	0	Unmodified	1049.5142	0.5141733	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.33	0.471	2	1								1			2	15.697	15.145	2	0.0061274	12533	160511_QHF_FH_JSI9i_2	63.419	48.038			0.46404	0.48553	108.68	3	3	Plateau	1.7553	1.5437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46404	0.48553	121.26	2	2	Median	151180000	87365000	63813000	13008000	4864400	8144000	0	0	0	0	0	0	138170000	82501000	55669000	44449	4064	41845	269381;269382;269383	361296;361297;361298	361298			3	
SAYFAEK	1	Unmodified	814.38612	0.38611924	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.43	4.75	3	3						1			2	3	2	19.686	17.906	2	0.01035	14644	160511_QHF_FH_JSI11i_2	75.213	28.842			0.82567	0.98503	16.982	7	2	Median	NaN	NaN	NaN	0	0	Median	0.81398	0.98062	1.1148	2	0	Median	0.82567	0.82103	19.829	3	1	Median	1.0432	1.1143	17.44	2	1	Median	1158500000	590510000	568020000	0	0	0	346870000	175870000	171000000	494270000	264850000	229420000	317380000	149780000	167600000	44450	932	41846	269384;269385;269386;269387;269388;269389;269390	361299;361300;361301;361302;361303;361304;361305;361306;361307;361308	361304			10	
SAYFAEKLYK	2	Acetyl (K)	1260.639	0.63903946	932	P09525	ANXA4	Annexin A4	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		71.298	61.183	2	0.0019466	32878	160513_QHF_FH_JSI11Kac_5	84.17	63.866			0.057743	0.057072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.057743	0.057072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9276900	4284200	4992700	0	0	0	0	0	0	9276900	4284200	4992700	0	0	0	44451	932	41847	269391;269392	361309;361310	361310	685		2	
SAYGGPVGAGIR	0	Unmodified	1103.5724	0.57235688	71;53;83	CON__P08729;CON__Q3KNV1;P08729;CON__Q9DCV7	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.59	2	4	4				1	3	4	3	5	5	5	35.092	30.477	2	1.8165E-07	25918	160511_QHF_FH_JSI12i_2	133.57	117.03		+	0.9686	0.99283	14.583	18	2	Median	1.129	0.93197	6.7544	3	0	Plateau	0.75684	0.89832	17.358	5	1	Median	1.0073	1.0021	16.436	5	1	Median	1.1177	1.1095	15.879	5	0	Plateau	4984200000	2362900000	2621300000	760740000	361980000	398760000	1044400000	516400000	527960000	1854100000	843070000	1011100000	1325000000	641500000	683500000	44452	53;71;83	41848	269393;269394;269395;269396;269397;269398;269399;269400;269401;269402;269403;269404;269405;269406;269407;269408;269409;269410	361311;361312;361313;361314;361315;361316;361317;361318;361319;361320;361321;361322;361323;361324;361325;361326;361327;361328;361329;361330;361331;361332;361333;361334;361335;361336;361337;361338	361315			28	
SAYNEGDYYHTVLWMEQVLK	1	Unmodified	2445.1311	0.13109711	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.581	84.233	3	2.0494E-45	47075	160513_QHF_FH_JSI11Kac_6	184.7	168.47			0.57763	0.89818	35.999	4	1	Linear	0.80927	0.70782	NaN	1	0	Median	0.50647	0.60782	NaN	1	1	Median	1.242	1.1397	NaN	1	0	Median	1.2071	1.2759	NaN	1	0	Median	341700000	208030000	133670000	81001000	47279000	33722000	124310000	96284000	28022000	56088000	29578000	26510000	80302000	34888000	45415000	44453	294	41849	269411;269412;269413;269414	361339;361340;361341;361342;361343;361344;361345	361339			7	
SAYNVYVAER	0	Unmodified	1170.5669	0.56693715	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.4		3						4	1	1	3	2	2	39.012	32.588	2	2.2604E-07	27910	160511_QHF_FH_JSI11i_2	115.82	100.24			1.0533	1.2427	13.076	8	1	Plateau	1.3301	1.1402	NaN	1	0	Median	1.0416	1.2872	19.372	3	0	Plateau	1.1913	1.1944	9.1961	2	1	Median	0.97398	1.0679	12.87	2	0	Median	680700000	342640000	338060000	12931000	5096800	7833900	203330000	109790000	93542000	271390000	137670000	133730000	193040000	90083000	102960000	44454	2144	41850	269415;269416;269417;269418;269419;269420;269421;269422	361346;361347;361348;361349;361350;361351;361352;361353	361348			4	
SAYQEAMDISK	1	Unmodified	1241.5598	0.55980286	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	6.01	5	2				1	3			2	3	3	3	43.145	38.995	2	1.6664E-23	34555	160511_QHF_FH_JSI9i_1	179.57	162.34			1.0458	1.1615	38.772	11	2	Median	1.441	1.2021	2.1669	2	0	Median	1.0501	1.2432	50.049	3	1	Plateau	0.99396	0.99762	59.082	3	1	Median	0.99068	1.0634	14.427	3	0	Median	3719000000	1985400000	1733600000	501940000	233570000	268370000	885660000	464310000	421340000	1475600000	838860000	636770000	855800000	448670000	407130000	44455	1385	41851	269423;269424;269425;269426;269427;269428;269429;269430;269431;269432;269433	361354;361355;361356;361357;361358;361359;361360;361361;361362;361363;361364;361365;361366;361367;361368;361369;361370;361371;361372;361373;361374	361369			20	
SAYQEAMDISK	1	Oxidation (M)	1257.5547	0.55471749	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	1	0	By MS/MS		By MS/MS		7	6	1					1				1		1		40.296	39.083	2	0.0031575	34561	160511_QHF_FH_JSI9i_1	58.743	49.037			2.2149	1.8332	NaN	1	0	Median	2.2149	1.8332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57886000	19092000	38794000	57886000	19092000	38794000	0	0	0	0	0	0	0	0	0	44456	1385	41851	269434;269435	361375;361376	361376		1026	2	
SAYQEAMDISKK	2	Unmodified	1369.6548	0.65476588	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.03		8	5					7		3	4	7	6	38.791	34.796	2;3	3.8832E-31	29424	160511_QHF_FH_JSI12i_3	184.55	161.23			1.1344	1.1716	59.676	19	7	Median	1.6201	1.378	120.46	3	1	Median	0.80302	0.9339	13.547	4	0	Median	1.3141	1.3508	57.053	6	2	Median	1.1425	1.2366	39.597	6	4	Median	3368500000	1663600000	1704800000	100450000	53848000	46597000	857710000	464280000	393420000	1412100000	670890000	741200000	998220000	474600000	523610000	44457	1385	41852	269436;269437;269438;269439;269440;269441;269442;269443;269444;269445;269446;269447;269448;269449;269450;269451;269452;269453;269454;269455	361377;361378;361379;361380;361381;361382;361383;361384;361385;361386;361387;361388;361389;361390;361391;361392;361393;361394;361395;361396;361397;361398;361399;361400;361401;361402	361401			24	
SAYQEAMDISKK	2	Acetyl (K)	1411.6653	0.66533057	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			56.433	45.795	2	0.018821	25383	160513_QHF_FH_JSI10Kac_4	69.979	51.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44458	1385	41852	269456	361403	361403	1329		1	
SAYQEAMDISKK	2	Oxidation (M)	1385.6497	0.6496805	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	1	1				By MS/MS	3	0			2										2	22.471	22.462	2;3	0.001495	19703	160511_QHF_FH_JSI12i_3	72.434	57.174			1.4981	1.511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4981	1.511	NaN	1	0	Median	51549000	17991000	33557000	0	0	0	0	0	0	0	0	0	51549000	17991000	33557000	44459	1385	41852	269457;269458	361404;361405	361405		1026	2	
SAYQTIDSAEAPADPFAVPEGR	0	Unmodified	2291.0706	0.070605346	3138	Q6RW13	AGTRAP	Type-1 angiotensin II receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.093	72.588	2	1.6057E-70	65778	160511_QHF_FH_JSI10i_1	229.16	221.95			1.2789	1.2457	42.126	4	3	Median	1.3274	1.082	NaN	1	1	Median	1.2322	1.4343	NaN	1	0	Median	2.6599	2.5511	NaN	1	1	Median	1.0061	1.0114	NaN	1	1	Median	131540000	53954000	77585000	35473000	15518000	19954000	39550000	21025000	18526000	31596000	8722900	22873000	24920000	8688300	16232000	44460	3138	41853	269459;269460;269461;269462	361406;361407;361408;361409;361410	361408			5	
SAYVSYDVQK	1	Unmodified	1158.5557	0.55570376	5006	Q9NUM4	TMEM106B	Transmembrane protein 106B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	31.668	30.746	2	1.216E-05	26880	160511_QHF_FH_JSI9i_1	142.92	120.18			0.74344	0.6847	0.36812	2	2	Median	0.82695	0.68292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66836	0.68648	NaN	1	1	Median	342700000	179680000	163010000	154470000	85444000	69027000	0	0	0	0	0	0	188230000	94241000	93986000	44461	5006	41854	269463;269464	361411;361412	361412			2	
SCAEWVSLSK	1	Unmodified	1165.5438	0.54375887	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.4	0.49	3	2									1	2	2	47.356	46.675	2	0.0001354	39918	160511_QHF_FH_JSI12i_2	83.883	72.035			0.96462	0.97471	23.232	5	0	Median	NaN	NaN	NaN	0	0	Median	0.82715	0.97471	NaN	1	0	Median	0.87642	0.8652	15.827	2	0	Median	1.1845	1.2705	19.736	2	0	Median	429590000	224120000	205470000	0	0	0	93599000	58647000	34952000	179360000	95321000	84041000	156630000	70150000	86478000	44462	589	41855	269465;269466;269467;269468;269469	361413;361414;361415	361413			2	
SCAFAMGHLVR	0	Unmodified	1247.5903	0.59033191	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			51.153	42.23	3	0.0037177	23206	160513_QHF_FH_JSI10Kac_6	55.718	52.018			1.6687	1.6724	70.486	2	2	Median	3.1368	2.753	NaN	1	1	Median	0.8877	1.016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15416000	7578700	7837800	2981200	765260	2215900	12435000	6813400	5621800	0	0	0	0	0	0	44463	2997	41856	269470;269471	361416;361417	361417			2	
SCAHDWVYE	0	Unmodified	1165.4499	0.44985848	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	34.454	33.693	2	0.00014979	28558	160511_QHF_FH_JSI11i_2	89.369	89.369			0.96545	1.0972	16.455	6	0	Median	1.2666	1.0988	NaN	1	0	Median	0.89943	1.0955	NaN	1	0	Median	0.88446	0.87266	8.0606	2	0	Median	1.1389	1.2184	11.121	2	0	Median	774330000	376100000	398230000	56458000	22555000	33903000	126830000	62243000	64583000	386170000	206740000	179430000	204880000	84564000	120310000	44464	1209	41857	269472;269473;269474;269475;269476;269477	361418;361419;361420;361421;361422;361423;361424;361425;361426	361425			9	
SCAISYTSYR	0	Unmodified	1206.5339	0.53392246	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	40.259	30.357	2	0.0032347	17462	160513_QHF_FH_JSI11Kac_5	69.954	63.649			1.2647	1.2152	21.845	3	1	Median	NaN	NaN	NaN	0	0	Median	0.94243	1.0873	NaN	1	1	Median	1.2647	1.2152	NaN	1	0	Median	1.538	1.6574	NaN	1	0	Median	5872300	2499400	3372800	0	0	0	1484600	854560	630070	2568000	1009100	1559000	1819600	635810	1183800	44465	1621	41858	269478;269479;269480	361427;361428;361429	361427			3	
SCATEVLK	1	Unmodified	906.44807	0.44806757	5829				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	55.228	54.61	3	0.048757	49525	160511_QHF_FH_JSI11i_1	15.662	1.4552	+		1.0774	1.0584	3.4367	6	0	Median	1.256	1.0709	NaN	1	0	Median	0.87499	0.99198	NaN	1	0	Median	1.1345	1.0866	0	2	0	Median	1.0232	1.046	0	2	0	Median	174340000	81501000	92841000	28529000	12056000	16473000	31836000	17056000	14780000	61894000	27828000	34067000	52083000	24561000	27522000	44466	5829	41859	269481;269482;269483;269484;269485;269486	361430;361431	361430			2	
SCDFLSSFR	0	Unmodified	1117.4862	0.48624399	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	62.295	61.509	2	2.6994E-05	53376	160511_QHF_FH_JSI11i_2	103.8	71.852			0.98706	0.91865	27.067	6	0	Median	1.1135	0.93642	NaN	1	0	Median	0.71967	0.90122	NaN	1	0	Median	0.83598	0.82475	8.3567	2	0	Median	1.3487	1.4452	6.5099	2	0	Median	665790000	341570000	324210000	72912000	37107000	35806000	104370000	55674000	48698000	255020000	135530000	119490000	233480000	113270000	120220000	44467	1425	41860	269487;269488;269489;269490;269491;269492	361432;361433;361434;361435;361436;361437;361438;361439	361437			8	
SCENLAPFNTALK	1	Unmodified	1463.7079	0.70786408	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	1	2	61.674	59.32	2	7.3759E-05	53970	160511_QHF_FH_JSI12i_1	126.71	79.818			2.0464	2.1044	49.81	6	5	Median	3.1547	2.5673	NaN	1	1	Median	1.4768	1.7787	64.058	2	2	Median	2.1231	2.0912	NaN	1	1	Median	1.228	1.3008	68.922	2	1	Median	1276700000	437150000	839600000	303300000	71915000	231390000	407810000	138620000	269190000	399650000	134120000	265530000	165980000	92489000	73495000	44468	2362	41861	269493;269494;269495;269496;269497;269498	361440;361441;361442;361443;361444;361445	361441			6	
SCESSMVLGYWDIR	0	Acetyl (Protein N-term)	1743.7596	0.75964166	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		100.85	100.79	2	1.4961E-05	91483	160511_QHF_FH_JSI10i_1	144.1	135.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44469	1188	41862	269499;269500	361446;361447	361447			2	
SCEVPTR	0	Unmodified	847.3858	0.38580166	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	9.0939	8.7907	2	0.013927	6691	160511_QHF_FH_JSI12i_1	67.032	42.034			0.93898	1.0515	7.1385	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83575	0.99975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.055	1.106	NaN	1	0	Median	528210000	248820000	279390000	0	0	0	224260000	118460000	105800000	0	0	0	303950000	130360000	173590000	44470	893	41863	269501;269502	361448	361448			1	
SCFESSPDPELK	1	Unmodified	1394.6024	0.60239596	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	38.005	37.306	2	2.0016E-07	33851	160511_QHF_FH_JSI12i_1	132.78	99.401			1.8275	1.7909	2.3012	3	1	Median	2.0668	1.7552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8275	1.7909	NaN	1	0	Median	1.775	1.8377	NaN	1	0	Median	247490000	72443000	175050000	27678000	7886300	19792000	0	0	0	139840000	44876000	94967000	79969000	19681000	60288000	44471	5474	41864	269503;269504;269505	361449;361450;361451;361452	361450			4	
SCGLHVTSIK	1	Unmodified	1100.5648	0.56482866	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.12	5.71		1	5						2	1	1	4	2	25.432	22.974	2;3	2.0937E-05	18867	160511_QHF_FH_JSI12i_3	73.499	60.463			0.97787	1.0156	26.339	8	3	Median	1.514	1.3602	NaN	1	0	Median	1.0327	1.1569	NaN	1	1	Median	0.78389	0.76008	16.685	4	2	Median	1.1269	1.1419	4.9366	2	0	Median	671970000	330750000	341210000	3620700	1408900	2211800	22366000	11418000	10948000	340270000	197140000	143130000	305710000	120780000	184920000	44472	1126	41865	269506;269507;269508;269509;269510;269511;269512;269513	361453;361454;361455;361456;361457;361458;361459	361459			7	
SCGSLLPELK	1	Unmodified	1102.5692	0.56924534	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	2	3	1	59.177	57.032	2	0.00071258	31787	160513_QHF_FH_JSI11Kac_4	87.308	71.646			0.96886	0.91203	58.866	7	1	Median	0.96886	0.79182	NaN	1	0	Median	1.5027	1.8006	96.197	2	1	Median	0.59879	0.60583	29.241	3	0	Plateau	0.98678	1.0285	NaN	1	0	Median	647170000	344580000	302580000	84101000	39535000	44566000	255350000	92087000	163260000	244360000	181820000	62537000	63355000	31138000	32217000	44473	1544	41866	269514;269515;269516;269517;269518;269519;269520	361460;361461;361462;361463;361464;361465	361463			5	
SCGSSTPDEFPTDIPGTK	1	Unmodified	1894.8255	0.82547262	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	57.106	56.492	2;3	1.1207E-22	51036	160511_QHF_FH_JSI11i_1	174.39	167.96			1.0735	1.0709	20.282	6	0	Median	1.157	0.96381	NaN	1	0	Median	0.99613	1.19	NaN	1	0	Median	0.86849	0.84752	5.6892	2	0	Median	1.243	1.2925	3.8167	2	0	Median	965030000	497120000	467910000	117430000	57122000	60310000	225030000	107940000	117080000	329070000	183410000	145660000	293500000	148640000	144850000	44474	1508	41867	269521;269522;269523;269524;269525;269526	361466;361467;361468;361469;361470;361471;361472;361473;361474;361475;361476;361477	361466			12	
SCGYSVR	0	Unmodified	827.35959	0.35958691	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	9.3874	8.9369	2	0.011622	6595	160511_QHF_FH_JSI11i_2	70.67	53.108			1.0116	1.1533	15.441	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94102	1.1533	NaN	1	0	Median	1.0116	1.0158	NaN	1	0	Median	1.2367	1.3812	NaN	1	0	Median	339930000	168450000	171470000	0	0	0	86267000	45932000	40335000	131900000	60038000	71860000	121760000	62483000	59279000	44475	2265	41868	269527;269528;269529	361478;361479;361480	361480			3	
SCILRPGGSEDASAMLR	0	Unmodified	1818.8717	0.87165172	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			51.039	49.458	3	0.027385	41330	160511_QHF_FH_JSI10i_3	33.697	29.595			1.0479	1.013	19.127	2	0	Median	1.4108	1.1597	NaN	1	0	Median	0.7784	0.88487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57611000	29928000	27683000	21658000	9420900	12238000	35952000	20507000	15445000	0	0	0	0	0	0	44476	1787	41869	269530;269531	361481	361481			1	
SCLLHQFTEK	1	Unmodified	1261.6125	0.61250714	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	38.654	37.866	2;3	1.3386E-05	31718	160511_QHF_FH_JSI10i_3	101.97	83.749			0.91186	0.8896	23.747	8	2	Median	1.1737	0.96399	26.733	2	1	Median	0.92567	1.0625	9.7455	2	0	Median	0.73604	0.69426	6.0131	2	0	Median	0.87181	0.88651	33.351	2	1	Median	899910000	433620000	466290000	62901000	23286000	39615000	218030000	103990000	114040000	397970000	209200000	188770000	221000000	97140000	123860000	44477	1938	41870	269532;269533;269534;269535;269536;269537;269538;269539	361482;361483;361484;361485;361486;361487;361488;361489;361490;361491;361492;361493;361494	361488			13	
SCLLLQFTDK	1	Unmodified	1223.622	0.62200919	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	72.693	71.854	2	2.5759E-06	63004	160511_QHF_FH_JSI11i_2	119.22	85.961			1.3219	1.3647	61.039	4	3	Median	NaN	NaN	NaN	0	0	Median	3.3316	3.812	NaN	1	1	Median	1.078	1.0475	3.7965	2	1	Median	1.5086	1.7309	NaN	1	1	Median	186280000	84384000	101890000	0	0	0	3165500	337800	2827700	115980000	54905000	61075000	67132000	29142000	37990000	44478	1930	41871	269540;269541;269542;269543;269544	361495;361496;361497;361498;361499	361498			5	
SCLPQIK	1	Unmodified	844.44767	0.44767364	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.697	29.372	2	0.017405	26067	160511_QHF_FH_JSI10i_1	62.714	10.031			1.3469	1.5793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3469	1.5793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47275000	24607000	22667000	0	0	0	47275000	24607000	22667000	0	0	0	0	0	0	44479	479	41872	269545	361500	361500			1	
SCMLTGTPESVQSAK	1	Unmodified	1594.7331	0.73309256	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				2	1	3	3	40.033	38.009	2	2.265E-30	34344	160511_QHF_FH_JSI12i_1	180.2	135.12			0.91779	0.96323	36.541	6	4	Median	0.54977	0.44806	NaN	1	1	Median	0.8045	0.93068	NaN	1	0	Median	0.89433	0.85176	21.288	3	3	Plateau	1.1727	1.2327	NaN	1	0	Median	1075600000	571780000	503790000	34751000	15579000	19172000	204620000	121520000	83102000	633480000	334370000	299110000	202710000	100310000	102400000	44480	3966	41873	269546;269547;269548;269549;269550;269551;269552;269553;269554	361501;361502;361503;361504;361505;361506;361507;361508;361509;361510;361511	361505			10	
SCMLTGTPESVQSAK	1	Oxidation (M)	1610.728	0.72800718	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	34.049	33.159	2	1.0546E-05	25273	160511_QHF_FH_JSI10i_1	87.363	76.266			1.5865	1.4515	56.993	2	2	Median	1.1631	0.97005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.164	2.1719	NaN	1	1	Median	40575000	15853000	24721000	23361000	9280900	14080000	0	0	0	0	0	0	17214000	6572400	10641000	44481	3966	41873	269555;269556;269557;269558	361512;361513;361514;361515;361516;361517	361515		2369	6	
SCNCLLLK	1	Unmodified	1006.494	0.49397191	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	5.99	3	5	1			1	2	2		4	2	3	5	38.884	34.65	2	6.8515E-05	29131	160511_QHF_FH_JSI11i_2	133.55	91.439			1.109	1.1161	43.761	14	3	Median	1.631	1.3492	25.231	4	2	Median	0.91368	1.105	3.0191	2	0	Median	0.8475	0.85711	22.943	3	0	Median	1.1666	1.288	61.801	5	1	Median	6412000000	2914900000	3497100000	1485800000	608130000	877720000	847570000	429890000	417680000	1714200000	892090000	822140000	2364400000	984830000	1379500000	44482	854	41874	269559;269560;269561;269562;269563;269564;269565;269566;269567;269568;269569;269570;269571;269572	361518;361519;361520;361521;361522;361523;361524;361525;361526;361527;361528;361529;361530;361531;361532;361533	361529			16	
SCPDAIK	1	Unmodified	789.36909	0.36908897	1197	P21926	CD9	CD9 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	11.127	7.8173	2	0.011101	5163	160513_QHF_FH_JSI12Kac_3	81.297	57.324			1.0688	1.0074	34.364	7	2	Median	1.2096	1.0074	NaN	1	0	Median	0.83076	0.96716	NaN	1	0	Median	1.0468	0.99742	52.808	3	2	Median	1.0948	1.1781	0.2798	2	0	Median	1142200000	560050000	582160000	164160000	81408000	82751000	337650000	177260000	160390000	336560000	151770000	184790000	303830000	149610000	154220000	44483	1197	41875	269573;269574;269575;269576;269577;269578;269579	361534;361535;361536;361537;361538;361539;361540;361541;361542;361543	361542			10	
SCPNPGEIR	0	Unmodified	1028.4709	0.47092828	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	1	3	2	17.316	15.772	2	1.851E-05	13225	160511_QHF_FH_JSI10i_1	107.66	80.14			0.80605	0.91294	25.642	7	0	Median	1.1044	0.91294	NaN	1	0	Median	0.78141	0.92737	NaN	1	0	Median	0.76632	0.76274	18.82	3	0	Median	1.0518	1.133	13.024	2	0	Median	2219800000	1162800000	1057000000	366590000	160010000	206580000	565970000	322610000	243360000	658550000	379940000	278610000	628680000	300200000	328470000	44484	893	41876	269580;269581;269582;269583;269584;269585;269586	361544;361545;361546;361547;361548;361549;361550;361551;361552	361549			9	
SCPVVQSSQHLFLDLPK	1	Unmodified	1953.9982	0.99823245	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								2	1	3	74.169	73.433	3	3.1361E-06	63576	160511_QHF_FH_JSI12i_3	103.17	86.486			0.93466	1.0377	18.654	4	3	Median	NaN	NaN	NaN	0	0	Median	0.814	0.99392	NaN	1	1	Median	0.91124	0.90851	NaN	1	1	Median	1.137	1.2319	18.159	2	1	Median	199210000	90618000	108590000	0	0	0	62332000	32923000	29409000	51546000	21291000	30255000	85334000	36404000	48930000	44485	1872	41877	269587;269588;269589;269590;269591;269592	361553;361554;361555;361556;361557;361558;361559	361558			7	
SCQFVAVR	0	Unmodified	965.47529	0.47528537	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	27.216	26.358	2	0.0021479	22154	160511_QHF_FH_JSI12i_2	82.279	66.125			0.81546	1.0217	30.092	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81546	1.0217	NaN	1	0	Median	0.74626	0.75989	NaN	1	0	Median	1.2035	1.3871	NaN	1	0	Median	470910000	244150000	226760000	0	0	0	107060000	55133000	51929000	230020000	132980000	97038000	133830000	56029000	77797000	44486	878	41878	269593;269594;269595	361560;361561;361562	361560			3	
SCQTALVEILDVIVR	0	Unmodified	1714.9288	0.9287559	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	102.76	102.62	3	3.4644E-05	90461	160511_QHF_FH_JSI11i_2	95.067	79.183			0.76258	0.79848	69.423	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47661	0.48873	NaN	1	0	Median	1.2201	1.3045	NaN	1	0	Median	35960000	19076000	16884000	0	0	0	0	0	0	23140000	14031000	9109200	12820000	5044900	7774700	44487	4983	41879	269596;269597	361563	361563			1	
SCSGVEFSTSGHAYTDTGK	1	Unmodified	1989.8374	0.83743429	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	2	3	33.239	32.557	3	2.0485E-11	27509	160511_QHF_FH_JSI12i_2	137.61	127.86			1.0463	1.1019	17.539	8	2	Median	1.2378	1.0943	NaN	1	0	Median	0.95063	1.1294	10.335	2	0	Median	0.91269	0.90418	7.8073	2	0	Median	1.2999	1.462	14.209	3	2	Plateau	594440000	293800000	300650000	30852000	15463000	15389000	157880000	80301000	77581000	205750000	112120000	93628000	199960000	85910000	114050000	44488	5499	41880	269598;269599;269600;269601;269602;269603;269604;269605	361564;361565;361566;361567;361568;361569;361570;361571;361572;361573;361574;361575;361576	361567			13	
SCSGVEFSTSGSSNTDTGK	1	Unmodified	1906.7851	0.78506437	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.65	8				2	3				2	4	3	4	29.064	26.281	2;3	1.4052E-209	23643	160511_QHF_FH_JSI12i_1	327.58	323.82			0.86917	0.98141	24.951	11	0	Median	1.2971	1.0719	3.8861	2	0	Median	0.72618	0.97679	16.84	3	0	Plateau	0.68215	0.6613	10.421	3	0	Median	1.036	1.079	11.543	3	0	Plateau	1780400000	829160000	951260000	312350000	105830000	206530000	556360000	289260000	267110000	443530000	244170000	199360000	468170000	189900000	278260000	44489	1570	41881	269606;269607;269608;269609;269610;269611;269612;269613;269614;269615;269616;269617;269618	361577;361578;361579;361580;361581;361582;361583;361584;361585;361586;361587;361588;361589;361590;361591;361592;361593;361594;361595;361596;361597;361598;361599;361600;361601;361602;361603;361604;361605	361586			29	
SCSLVLEHQPDNIK	1	Unmodified	1638.8036	0.80355538	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	3	1	38.679	38.056	2;3	3.3616E-10	32587	160511_QHF_FH_JSI11i_2	112.13	91.822			0.93596	0.94472	40.608	3	2	Median	NaN	NaN	NaN	0	0	Median	0.60945	0.74819	NaN	1	1	Median	1.2604	1.2482	39.394	2	1	Median	NaN	NaN	NaN	0	0	Median	205610000	105470000	100140000	0	0	0	82883000	47748000	35135000	122720000	57719000	65005000	0	0	0	44490	2528	41882	269619;269620;269621;269622;269623	361606;361607;361608;361609;361610;361611	361610			6	
SCSPELQQK	1	Unmodified	1075.4968	0.49680868	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	11.743	9.7259	2	2.8862E-05	8065	160511_QHF_FH_JSI11i_1	119.17	81.615			0.90735	0.9825	14.847	4	4	Median	NaN	NaN	NaN	0	0	Median	0.88856	1.0616	NaN	1	1	Median	0.87426	0.85326	9.0003	2	2	Median	1.0329	1.1064	NaN	1	1	Median	1037200000	507200000	529990000	0	0	0	2606800	1494800	1111900	768860000	384810000	384050000	265720000	120890000	144830000	44491	1092	41883	269624;269625;269626;269627	361612;361613;361614;361615	361612			4	
SCSPELQQKFR	1	Acetyl (K)	1420.6769	0.67689831	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		52.356	41.622	2	0.0020884	24347	160513_QHF_FH_JSI11Kac_4	78.934	32.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4923900	4923900	0	0	0	0	0	0	0	4923900	4923900	0	0	0	0	44492	1092	41884	269628	361616	361616	945		1	
SCVEEPEPEPEAAEGDGDK	1	Unmodified	2043.8215	0.82150945	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	31.272	30.765	2;3	2.6074E-32	26758	160511_QHF_FH_JSI9i_1	187.57	181.34			1.1264	1.2067	17.021	7	0	Median	1.4278	1.2067	NaN	1	0	Median	0.91361	1.0658	29.057	2	0	Median	0.96517	0.94227	3.5225	2	0	Median	1.2041	1.2427	1.1476	2	0	Median	709440000	343140000	366300000	66135000	35000000	31135000	218980000	105750000	113230000	186500000	96834000	89666000	237820000	105550000	132270000	44493	1758	41885	269629;269630;269631;269632;269633;269634;269635;269636	361617;361618;361619;361620;361621;361622;361623;361624;361625;361626;361627;361628;361629	361626			12	
SCVEEPEPEPEAAEGDGDKK	2	Unmodified	2171.9165	0.91647247	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.177	25.606	3	1.8007E-10	22446	160511_QHF_FH_JSI11i_1	122.22	120.65			1.1603	1.1408	15.229	4	0	Median	1.2578	1.0515	NaN	1	0	Median	1.0703	1.2377	NaN	1	0	Median	1.0641	1.0463	NaN	1	0	Median	1.373	1.4398	NaN	1	0	Median	755360000	377370000	377980000	147220000	74675000	72546000	202330000	109340000	92990000	204120000	106790000	97330000	201690000	86573000	115120000	44494	1758	41886	269637;269638;269639;269640	361630;361631;361632;361633;361634;361635;361636;361637;361638	361632			9	
SCVIVLR	0	Unmodified	845.47931	0.47930812	4243	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1	1	1	2	1	44.07	34.056	2	0.0036628	17660	160513_QHF_FH_JSI10Kac_5	100.07	0			1.4255	1.4067	37.012	5	5	Median	3.0406	2.5712	NaN	1	1	Median	1.1748	1.4067	NaN	1	1	Median	1.1541	1.1363	30.136	2	2	Median	1.5002	1.6442	NaN	1	1	Median	144640000	64857000	79780000	16821000	4748900	12072000	38307000	18285000	20022000	71742000	34799000	36942000	17768000	7023800	10744000	44495	4243	41887	269641;269642;269643;269644;269645	361639;361640;361641;361642;361643	361643			5	
SCWVLHAFSSLK	1	Unmodified	1433.7126	0.71255553	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	78.108	70.262	3	3.8058E-06	36831	160513_QHF_FH_JSI12Kac_6	80.905	75.412			1.1012	1.2276	21.729	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90992	1.0528	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3328	1.4315	NaN	1	0	Median	132010000	59727000	72282000	0	0	0	108710000	48655000	60051000	0	0	0	23302000	11072000	12231000	44496	287	41888	269646;269647	361644;361645	361644			2	
SCYLSSLDLLLEHR	0	Unmodified	1704.8505	0.85050558	4351	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	90.148	90.115	3	0.0011638	78121	160511_QHF_FH_JSI12i_3	39.746	36.988			0.98183	0.9551	57.461	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68675	0.6362	NaN	1	0	Median	1.4037	1.4339	NaN	1	0	Median	30900000	13478000	17422000	0	0	0	0	0	0	14913000	6514500	8398700	15987000	6963400	9023800	44497	4351	41889	269648;269649	361646;361647	361646			2	
SDAAVDTSSEITTK	1	Acetyl (Protein N-term)	1465.6784	0.67839767	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	5.25	12	5	6	8	7	3	1		1	11	11	13	8	42.973	38.752	2	3.1068E-68	16547	160513_QHF_FH_JSI12Kacf_1	112.15	106.37			0.93111	0.94828	84.18	26	5	Median	1.0132	0.88595	160.73	6	2	Median	0.80462	0.94828	9.7231	6	0	Median	0.9256	0.86867	65.568	8	2	Median	1.0567	1.0786	45.475	6	1	Median	16150000000	8329900000	7819700000	2592200000	1244700000	1347500000	4396700000	2662300000	1734400000	5116400000	2434900000	2681500000	4044300000	1988100000	2056200000	44498	849	41890	269650;269651;269652;269653;269654;269655;269656;269657;269658;269659;269660;269661;269662;269663;269664;269665;269666;269667;269668;269669;269670;269671;269672;269673;269674;269675;269676;269677;269678;269679;269680;269681;269682;269683;269684;269685;269686;269687;269688;269689;269690;269691;269692	361648;361649;361650;361651;361652;361653;361654;361655;361656;361657;361658;361659;361660;361661;361662;361663;361664;361665;361666;361667;361668;361669;361670;361671;361672;361673;361674;361675;361676;361677;361678;361679;361680;361681;361682;361683;361684;361685;361686;361687;361688;361689;361690;361691;361692;361693;361694;361695;361696;361697;361698;361699;361700;361701;361702;361703;361704	361691			57	
SDAAVDTSSEITTKDLK	2	Acetyl (Protein N-term)	1821.8844	0.8843677	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	52.195	51.524	2	2.5721E-22	45726	160511_QHF_FH_JSI9i_1	101.53	58.789			0.97941	0.45963	107.13	4	1	Linear	1.0358	0.85061	NaN	1	0	Median	0.48225	0.57721	NaN	1	0	Median	0.92608	0.87917	NaN	1	0	Median	6.0785	6.2222	NaN	1	1	Median	233120000	133390000	99731000	54466000	26205000	28261000	77626000	51354000	26271000	51269000	28467000	22802000	49763000	27366000	22397000	44499	849	41891	269693;269694;269695;269696;269697	361705;361706;361707;361708;361709;361710;361711;361712;361713;361714;361715	361714			11	
SDAAVDTSSEITTKDLK	2	Acetyl (K);Acetyl (Protein N-term)	1863.8949	0.89493239	849	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	0.775				33	7	2	2			3	12	3	26	71.84	63.234	2;3	3.0021E-190	25278	160513_QHF_FH_JSI12Kacf_1	156.69	143.71			0.90023	0.97026	16.233	32	0	Median	1.2956	0.99701	11.29	3	0	Median	0.97442	1.1037	11.02	9	0	Median	0.91197	0.89188	3.8144	2	0	Median	0.88036	0.94049	16.642	18	0	Median	563330000	275200000	288120000	96776000	36951000	59825000	189630000	97430000	92196000	28299000	14756000	13543000	248630000	126070000	122560000	44500	849	41891	269698;269699;269700;269701;269702;269703;269704;269705;269706;269707;269708;269709;269710;269711;269712;269713;269714;269715;269716;269717;269718;269719;269720;269721;269722;269723;269724;269725;269726;269727;269728;269729;269730;269731;269732;269733;269734;269735;269736;269737;269738;269739;269740;269741	361716;361717;361718;361719;361720;361721;361722;361723;361724;361725;361726;361727;361728;361729;361730;361731;361732;361733;361734;361735;361736;361737;361738;361739;361740;361741;361742;361743;361744;361745;361746;361747;361748;361749;361750;361751;361752;361753;361754;361755;361756;361757;361758;361759;361760;361761;361762;361763;361764;361765;361766;361767;361768	361731	502		51	
SDADENVSASDK	1	Unmodified	1236.5106	0.51060406	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	1	3	2	9.0301	5.7143	2	1.6676E-65	5937	160511_QHF_FH_JSI10i_1	237.84	226.69			1.0629	1.051	41.043	7	1	Median	1.0629	0.87952	NaN	1	0	Median	1.2802	1.4858	NaN	1	0	Median	1.2364	1.1918	58.073	3	1	Median	0.90507	0.95888	12.97	2	0	Median	784710000	389350000	395350000	197760000	102620000	95144000	198530000	89069000	109460000	219560000	108690000	110870000	168850000	88974000	79879000	44501	3896	41892	269742;269743;269744;269745;269746;269747;269748	361769;361770;361771;361772;361773;361774;361775;361776;361777;361778	361775			10	
SDAEDGEGTVASWELR	0	Unmodified	1720.754	0.75402223	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		56.168	55.763	2	0.00043852	50548	160511_QHF_FH_JSI11i_1	92.19	82.535			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44502	4093	41893	269749;269750	361779;361780	361779			2	
SDAEEDGGTVSQEEEDRKPK	2	Unmodified	2204.9669	0.96692814	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								4	4	2	2	14.921	14.412	3;4	2.0103E-42	11811	160511_QHF_FH_JSI11i_1	199.76	189.76			1.0194	1.0517	14.462	11	0	Median	1.3564	1.0995	16.477	3	0	Median	0.94078	1.1402	11.859	4	0	Median	1.0261	0.99812	0.69711	2	0	Median	0.83728	0.88819	3.7872	2	0	Median	1907400000	901870000	1005500000	353850000	161520000	192330000	507770000	255690000	252080000	519580000	235920000	283660000	526220000	248740000	277480000	44503	1299	41894	269751;269752;269753;269754;269755;269756;269757;269758;269759;269760;269761;269762	361781;361782;361783;361784;361785;361786;361787;361788;361789;361790;361791;361792;361793;361794;361795;361796;361797;361798;361799;361800;361801;361802;361803;361804	361783			24	
SDAGLESDTAMK	1	Unmodified	1223.534	0.53398204	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.787	23.241	2	7.4835E-11	20330	160511_QHF_FH_JSI10i_1	147.74	137.76			0.84635	0.82968	18.431	4	0	Median	0.85401	0.69265	NaN	1	0	Median	0.83875	0.98736	NaN	1	0	Median	0.73141	0.72147	NaN	1	0	Median	0.89495	0.95411	NaN	1	0	Median	358450000	188180000	170270000	82603000	39828000	42775000	56188000	25669000	30519000	113900000	68128000	45773000	105750000	54556000	51198000	44504	4940	41895	269763;269764;269765;269766	361805;361806;361807;361808;361809;361810;361811	361810			7	
SDAGLESDTAMK	1	Oxidation (M)	1239.5289	0.52889667	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	14.015	13.506	2	0.00070131	10863	160511_QHF_FH_JSI9i_1	98.943	72.428			0.90677	0.83406	46.271	2	2	Median	0.73845	0.60132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1135	1.1569	NaN	1	1	Median	47430000	27778000	19652000	16500000	6752800	9747200	0	0	0	11576000	11576000	0	19354000	9449400	9905100	44505	4940	41895	269767;269768;269769;269770	361812;361813;361814;361815	361815		2559	4	
SDAGNLNFEFQVAK	1	Unmodified	1538.7365	0.73652168	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.619	67.31	2	6.4965E-05	61062	160511_QHF_FH_JSI10i_1	146.5	118.49			0.57133	0.67911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57133	0.67911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63469000	40479000	22990000	0	0	0	63469000	40479000	22990000	0	0	0	0	0	0	44506	1685	41896	269771	361816	361816			1	
SDALETLGFLNHYQMK	1	Unmodified	1865.8982	0.89818405	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		10	4						4	4	4	4	6	84.668	82.27	2;3	2.0049E-137	74639	160511_QHF_FH_JSI11i_2	249.62	242.21			1.0145	1.0438	23.119	17	2	Median	1.1904	0.99502	17.673	4	1	Median	0.94842	1.1573	30.779	4	1	Median	1.1033	1.0877	18.812	4	0	Median	0.79481	0.8421	21.711	5	0	Median	3872400000	1967500000	1904900000	567710000	298020000	269690000	876760000	495150000	381610000	1408600000	695540000	713070000	1019300000	478790000	540510000	44507	1063	41897	269772;269773;269774;269775;269776;269777;269778;269779;269780;269781;269782;269783;269784;269785;269786;269787;269788;269789	361817;361818;361819;361820;361821;361822;361823;361824;361825;361826;361827;361828;361829;361830;361831;361832;361833;361834;361835;361836;361837;361838;361839;361840;361841;361842;361843;361844;361845;361846;361847;361848;361849;361850;361851;361852	361841			36	
SDALETLGFLNHYQMK	1	Oxidation (M)	1881.8931	0.89309867	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2.25	0.433		3	1									1	3	77.885	77.184	2;3	0.00019628	67959	160511_QHF_FH_JSI11i_2	63.894	56.835			1.1261	1.1208	8.7169	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1261	1.1208	NaN	1	0	Median	1.0024	1.0943	12.173	2	0	Median	252330000	133110000	119220000	0	0	0	0	0	0	102420000	44767000	57649000	149910000	88345000	61568000	44508	1063	41897	269790;269791;269792;269793	361853;361854;361855	361855		699	2	
SDALETLGFLNHYQMKNPNGPYPYTLK	2	Acetyl (K)	3152.5277	0.52772146	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		90.287	80.938	3	5.5964E-111	45338	160513_QHF_FH_JSI11Kac_6	278.97	252.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30760000	30760000	0	0	0	0	0	0	0	30760000	30760000	0	0	0	0	44509	1063	41898	269794	361856	361856	896		1	
SDAPDTLLLEK	1	Unmodified	1200.6238	0.62378333	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	2	3	60.359	55.339	2	4.1644E-13	49737	160511_QHF_FH_JSI12i_1	148.32	80.097			1.0083	1.0418	31.383	8	1	Median	1.4077	1.1535	NaN	1	0	Median	0.88512	1.045	20.613	2	0	Median	0.99023	0.95984	9.9677	2	0	Median	0.95157	0.99087	48.711	3	1	Plateau	1871800000	935250000	936570000	452830000	190160000	262670000	458720000	226770000	231950000	470310000	245370000	224940000	489960000	272950000	217010000	44510	1803	41899	269795;269796;269797;269798;269799;269800;269801;269802	361857;361858;361859;361860;361861;361862;361863;361864;361865;361866;361867;361868;361869;361870;361871;361872	361861			16	
SDAPTGDVLLDEALK	1	Unmodified	1542.7777	0.77771779	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	3	2	75.493	75.055	2;3	5.4395E-16	66921	160511_QHF_FH_JSI9i_1	168.98	142.1			1.0258	1.0356	11.115	10	5	Median	1.2896	1.0606	2.9613	2	0	Median	0.81523	0.97156	6.2445	3	3	Median	1.0777	1.0372	12.541	3	2	Plateau	1.1234	1.1781	8.9055	2	0	Median	1105400000	535420000	570000000	233990000	98738000	135250000	392540000	201710000	190830000	336750000	161780000	174970000	142140000	73193000	68951000	44511	4717	41900	269803;269804;269805;269806;269807;269808;269809;269810;269811;269812	361873;361874;361875;361876;361877;361878;361879;361880;361881;361882;361883;361884;361885;361886;361887	361886			15	
SDAPTSSSFFTGLK	1	Unmodified	1443.6882	0.6881745	5191	Q9P0V3	SH3BP4	SH3 domain-binding protein 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		64.521	64.078	2	0.00058894	58244	160511_QHF_FH_JSI11i_1	68.44	48.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44512	5191	41901	269813	361888	361888			1	
SDASPSSIR	0	Unmodified	918.44067	0.44067401	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.18	3					2	1			1	1	3	1	11.521	7.5768	2	0.00012759	7113	160511_QHF_FH_JSI9i_1	91.318	40.352			0.95219	0.96612	8.8915	6	0	Median	1.1355	0.93132	NaN	1	0	Median	0.88664	1.0423	NaN	1	0	Median	0.98221	0.94405	12.354	3	0	Median	0.92309	0.98871	NaN	1	0	Median	1291400000	652400000	639020000	455450000	213960000	241480000	4902000	2664100	2237900	421160000	238470000	182690000	409910000	197300000	212610000	44513	1410	41902	269814;269815;269816;269817;269818;269819	361889;361890;361891;361892;361893;361894	361893			6	
SDATADDLIDVVEGNR	0	Unmodified	1688.7853	0.78532236	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	79.168	78.637	3	0.053808	71627	160511_QHF_FH_JSI12i_1	34.498	23.552			1.1663	1.1768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1663	1.1768	NaN	1	0	Median	27128000	12508000	14620000	0	0	0	0	0	0	0	0	0	27128000	12508000	14620000	44514	5505	41903	269820	361895	361895			0	
SDAYYCTGDVTAWTK	1	Unmodified	1736.7352	0.73520105	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.279	59.786	2	2.4341E-15	54018	160511_QHF_FH_JSI10i_1	167.44	150.07			1.2189	1.4146	29.479	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2189	1.4146	NaN	1	0	Median	0.93538	0.90827	NaN	1	0	Median	1.53	1.5875	NaN	1	1	Median	210570000	92527000	118050000	0	0	0	71462000	25579000	45883000	59393000	26598000	32795000	79718000	40350000	39368000	44515	939	41904	269821;269822;269823;269824	361896;361897;361898;361899;361900	361899			5	
SDDDGFEIVPIEDPAK	1	Unmodified	1745.7996	0.79957544	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	78.86	78.519	2	1.8571E-05	71161	160511_QHF_FH_JSI10i_1	115.57	100.88			0.90935	0.96711	10.552	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.87515	0.99728	NaN	1	0	Median	0.84854	0.81963	NaN	1	1	Median	0.91908	0.96711	NaN	1	0	Median	96584000	52373000	44211000	0	0	0	29743000	16088000	13655000	28992000	17383000	11609000	37849000	18902000	18948000	44516	3460	41905	269825;269826;269827	361901;361902;361903;361904	361903			4	
SDDDTSNFDEPEK	1	Unmodified	1497.5743	0.57432653	177	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				22.821	21.615	2	5.3706E-06	18386	160511_QHF_FH_JSI9i_1	87.184	77.231			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44517	177	41906	269828	361905	361905			1	
SDDILEEGEK	1	Unmodified	1133.5088	0.50881315	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		29.848	29.587	2	0.0017979	26365	160511_QHF_FH_JSI10i_1	67.704	52.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44518	3249	41907	269829;269830;269831	361906;361907;361908	361908			3	
SDDMFTFHGPGK	1	Unmodified	1337.571	0.57103625	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	48.938	47.954	3	0.0030519	41249	160511_QHF_FH_JSI12i_2	44.829	41.641			1.0455	1.019	9.9489	4	0	Median	1.1627	1.0132	NaN	1	0	Median	0.76973	0.93583	NaN	1	0	Median	1.1638	1.188	NaN	1	0	Median	0.94012	1.0247	NaN	1	0	Median	168990000	83194000	85799000	31610000	12676000	18934000	36628000	19541000	17087000	62573000	31100000	31473000	38181000	19876000	18305000	44519	1685	41908	269832;269833;269834;269835	361909	361909			1	
SDDNRESLEK	1	Unmodified	1191.5368	0.53675924	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	7.1295	6.7937	2;3	4.5734E-06	4666	160511_QHF_FH_JSI12i_1	88.056	73.799			0.96957	0.94724	7.2271	8	0	Median	1.2563	1.0392	9.0889	2	0	Median	0.77391	0.91758	1.2399	2	0	Median	0.96957	0.94724	0.77526	2	0	Median	0.96097	1.005	9.5311	2	0	Median	2884900000	1305700000	1579200000	785810000	327530000	458290000	655090000	294670000	360420000	662670000	278970000	383700000	781310000	404520000	376780000	44520	1342	41909	269836;269837;269838;269839;269840;269841;269842;269843	361910;361911;361912;361913;361914;361915;361916	361912			7	
SDDNRESLEKR	1	Acetyl (K)	1389.6484	0.64843495	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	16.937	9.3823	3	0.02456	6962	160513_QHF_FH_JSI12Kac_4	46.592	38.079			0.87485	0.94595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87485	0.94595	NaN	1	0	Median	6907600	3440500	3467100	0	0	0	0	0	0	0	0	0	6907600	3440500	3467100	44521	1342	41910	269844	361917	361917	1269		1	
SDDNSYDEK	1	Unmodified	1071.3993	0.3992627	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	12	0					1								1	6.2811	-0.87625	2	0.043746	2007	160513_QHF_FH_JSI12Kac_2	40.352	30.365			1.157	1.2639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.157	1.2639	NaN	1	0	Median	1375900	675070	700820	0	0	0	0	0	0	0	0	0	1375900	675070	700820	44522	1667	41911	269845	361918	361918			1	
SDDSVIQLLNPNR	0	Unmodified	1469.7474	0.74742071	4537	Q9BY67	CADM1	Cell adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			76.027	75.134	2	3E-12	68085	160511_QHF_FH_JSI10i_1	119.34	93.397			1.2061	0.96299	NaN	1	0	Median	1.2061	0.96299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41340000	16170000	25170000	41340000	16170000	25170000	0	0	0	0	0	0	0	0	0	44523	4537	41912	269846;269847	361919;361920	361919			2	
SDEAVKPFGLK	2	Unmodified	1189.6343	0.63428844	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	4.97	5	8	5				1	3		4	4	7	7	39.325	36.87	2;3	4.7444E-12	31308	160511_QHF_FH_JSI11i_2	143.61	114.52			1.0059	1.0652	25.829	22	6	Median	1.4128	1.1885	17.866	4	1	Linear	0.86833	1.0652	33.694	4	1	Median	0.96604	0.89203	33.547	7	2	Median	1.1056	1.1383	14.752	7	2	Median	4560700000	2108200000	2452500000	666930000	281250000	385690000	1077500000	483090000	594430000	1749500000	837350000	912160000	1066700000	506490000	560260000	44524	1650	41913	269848;269849;269850;269851;269852;269853;269854;269855;269856;269857;269858;269859;269860;269861;269862;269863;269864;269865;269866;269867;269868;269869	361921;361922;361923;361924;361925;361926;361927;361928;361929;361930;361931;361932;361933;361934;361935;361936;361937;361938;361939;361940;361941;361942;361943;361944;361945;361946;361947;361948;361949;361950;361951;361952	361941			32	
SDEAVKPFGLK	2	Acetyl (K)	1231.6449	0.64485312	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	0.661					1	4	3			1	2	2	3	60.243	49.239	2	1.7657E-09	28724	160513_QHF_FH_JSI10Kac_3	129.38	91.907			0.68372	0.74628	107.83	8	2	Median	1.1811	0.96151	NaN	1	0	Median	0.77159	0.9236	14.201	2	0	Median	0.25101	0.24913	90.27	2	1	Median	0.67422	0.7424	151.45	3	1	Median	325130000	165190000	159930000	164260000	65127000	99132000	49316000	25095000	24221000	39567000	28018000	11549000	71986000	46954000	25032000	44525	1650	41913	269870;269871;269872;269873;269874;269875;269876;269877	361953;361954;361955;361956;361957;361958;361959;361960;361961;361962	361961	1668		10	
SDEDDWSK	1	Unmodified	980.37232	0.37231967	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	14.619	11.868	2	0.0012676	10186	160511_QHF_FH_JSI9i_1	91.783	90.509			0.73845	0.80811	26.908	6	1	Median	1.2514	1.002	NaN	1	0	Median	0.59856	0.69372	39.179	2	1	Median	0.8206	0.8094	32.809	2	0	Median	0.66354	0.71357	NaN	1	0	Median	1415400000	830040000	585370000	244490000	124820000	119680000	462440000	301050000	161380000	323530000	192510000	131020000	384960000	211670000	173290000	44526	154	41914	269878;269879;269880;269881;269882;269883	361963;361964;361965;361966;361967;361968;361969	361969			7	
SDEDEERVHEEL	0	Unmodified	1485.6219	0.62194543	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	24.473	23.922	2;3	6.5522E-05	20935	160511_QHF_FH_JSI10i_1	83.358	72.123			1.0537	1.0239	14.662	8	2	Median	1.1673	0.95849	5.2825	2	1	Median	0.9786	1.1458	11.843	2	0	Median	0.97679	0.94459	18.335	2	0	Median	0.9048	0.93629	21.132	2	1	Median	801930000	383300000	418630000	201290000	96056000	105230000	154630000	69417000	85216000	207010000	87810000	119200000	239000000	130010000	108990000	44527	3973	41915	269884;269885;269886;269887;269888;269889;269890;269891	361970;361971;361972;361973;361974;361975;361976;361977;361978;361979;361980;361981;361982	361978			13	
SDEDYLYREELAQFHR	0	Unmodified	2069.9443	0.94428262	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	61.058	60.92	3	9.0953E-05	52458	160511_QHF_FH_JSI12i_3	76.391	70.269			1.437	1.3978	9.7029	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5938	1.4971	NaN	1	0	Median	1.2956	1.3051	NaN	1	0	Median	157550000	60978000	96570000	0	0	0	0	0	0	74335000	31106000	43230000	83213000	29873000	53341000	44528	1100	41916	269892;269893	361983;361984;361985	361984			3	
SDEFSLADALPEHSPAK	1	Acetyl (Protein N-term)	1854.8636	0.86357268	3627	Q8NDC0	MAPK1IP1L	MAPK-interacting and spindle-stabilizing protein-like	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.8	4		1							3		1	1	76.877	76.084	2	2.3546E-82	69421	160511_QHF_FH_JSI12i_1	123.84	108.63			0.78517	0.82187	153.05	3	1	Median	0.12704	0.10515	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1229	2.0951	NaN	1	0	Median	0.78517	0.82187	NaN	1	0	Median	735340000	424560000	310790000	200010000	185480000	14527000	0	0	0	226910000	77135000	149780000	308420000	161940000	146480000	44529	3627	41917	269894;269895;269896;269897;269898	361986;361987;361988;361989;361990;361991;361992;361993	361988			8	
SDEGHPFR	0	Unmodified	943.41479	0.41479361	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.7		8	2					1		2	2	4	3	7.9929	7.6482	2;3	0.00032001	5349	160511_QHF_FH_JSI11i_2	112.17	95.244			0.94236	0.99276	8.7111	10	0	Median	1.3728	1.1675	7.187	2	0	Median	0.80107	0.98934	0.43219	2	0	Median	0.96572	1.0246	3.9789	3	0	Plateau	0.81932	0.94681	2.1159	3	0	Plateau	3914100000	1958600000	1955500000	514430000	229600000	284820000	870650000	445140000	425510000	1621500000	796490000	825010000	907530000	487370000	420160000	44530	4919	41918	269899;269900;269901;269902;269903;269904;269905;269906;269907;269908;269909	361994;361995;361996;361997;361998;361999;362000;362001;362002;362003;362004;362005;362006	362001			13	
SDEGQLSPATR	0	Unmodified	1159.5469	0.54692999	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.525	14.398	2	0.014487	11942	160511_QHF_FH_JSI11i_1	52.193	38.036			1.0241	0.98853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0241	0.98853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	158760000	80341000	78421000	0	0	0	0	0	0	158760000	80341000	78421000	0	0	0	44531	2636	41919	269910	362007	362007			1	
SDEISFADFK	1	Unmodified	1157.5241	0.52406928	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	64.73	64.026	2	0.00013792	58359	160511_QHF_FH_JSI12i_1	97.277	74.497			1.1419	1.1057	26.833	3	3	Median	1.1339	0.92014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1419	1.1057	NaN	1	1	Median	1.4991	1.561	NaN	1	1	Median	207440000	78167000	129270000	51713000	21054000	30659000	0	0	0	80631000	30764000	49867000	75096000	26349000	48747000	44532	2612	41920	269911;269912;269913	362008;362009;362010	362009			3	
SDELREAWR	0	Unmodified	1160.5574	0.5574351	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							1	2	1	2	27.962	27.407	2;3	0.0012388	22642	160511_QHF_FH_JSI12i_3	53.751	32.974			1.0212	1.0583	19.491	6	1	Median	1.6484	1.4503	NaN	1	0	Median	0.97313	1.2003	20.822	2	1	Median	1.0845	1.0811	NaN	1	0	Median	0.9153	0.93374	5.2625	2	0	Median	263380000	143090000	120290000	31200000	14374000	16826000	68992000	32840000	36152000	30879000	14876000	16003000	132310000	81004000	51309000	44533	1000	41921	269914;269915;269916;269917;269918;269919	362011;362012;362013	362013			3	
SDEMNVK	1	Unmodified	821.35892	0.35891821	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	10.412	6.599	2	0.0034484	6191	160511_QHF_FH_JSI9i_1	104.45	77.486			0.88109	0.91869	13.543	8	0	Median	1.1086	0.87381	NaN	1	0	Median	0.68982	0.80816	30.689	2	0	Median	0.95306	0.91633	6.0945	3	0	Median	0.86241	0.93028	1.4073	2	0	Median	4955000000	2441900000	2513100000	1091500000	426950000	664550000	1318100000	712540000	605600000	1333500000	684360000	649130000	1211900000	618050000	593830000	44534	1915	41922	269920;269921;269922;269923;269924;269925;269926;269927	362014;362015;362016;362017;362018;362019;362020;362021;362022;362023	362020			10	
SDEMNVK	1	Oxidation (M)	837.35383	0.35383283	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	5.6722	5.2349	2	0.018146	1747	160511_QHF_FH_JSI10i_1	69.998	26.998			0.6909	0.60521	29.291	3	0	Plateau	0.6909	0.56204	NaN	1	0	Median	0.78214	0.92167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91935	0.94458	NaN	1	0	Median	417370000	263260000	154110000	182820000	119430000	63392000	134300000	83468000	50833000	0	0	0	100250000	60367000	39882000	44535	1915	41922	269928;269929;269930	362024;362025;362026;362027;362028	362026		1569	5	
SDENEDPSVVGEFK	1	Unmodified	1550.6736	0.67364665	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	2	3	3	48.893	45.77	2	1.7619E-21	41388	160511_QHF_FH_JSI12i_1	176.42	140			1.0362	1.0394	12.088	6	0	Median	1.0195	0.84529	NaN	1	0	Median	0.79628	0.94955	NaN	1	0	Median	1.0787	1.0394	8.2113	2	0	Median	1.0699	1.1386	3.1735	2	0	Median	753790000	393250000	360540000	166780000	87276000	79504000	190260000	108600000	81656000	190730000	95061000	95667000	206020000	102310000	103710000	44536	5161	41923	269931;269932;269933;269934;269935;269936;269937;269938;269939	362029;362030;362031;362032;362033;362034;362035;362036;362037;362038;362039;362040;362041;362042;362043;362044;362045	362033			17	
SDEREVAEAATGEDASSPPPK	1	Acetyl (Protein N-term)	2183.9818	0.98184992	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	2.93	12				1					3	3	4	3	42.783	41.053	2;3	1.2075E-18	37054	160511_QHF_FH_JSI11i_1	33.656	29.936			1.1813	1.128	9.7599	6	0	Median	1.3995	1.1395	8.057	2	0	Median	0.95839	1.128	4.1193	2	0	Median	1.0618	1.0484	NaN	1	0	Median	1.339	1.3677	NaN	1	0	Median	593830000	281100000	312730000	143070000	65537000	77530000	176130000	88518000	87612000	205060000	87031000	118030000	69571000	40015000	29557000	44537	4279	41924	269940;269941;269942;269943;269944;269945;269946;269947;269948;269949;269950;269951;269952	362046;362047;362048;362049;362050;362051;362052;362053;362054;362055;362056;362057;362058;362059;362060;362061	362046			16	
SDESDQQESLHK	1	Unmodified	1401.6008	0.60081606	1682	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	3	3	2	8.5058	6.7572	2;3	5.7874E-65	5640	160511_QHF_FH_JSI10i_1	233.54	219.77			0.9982	0.98024	13.776	10	0	Median	1.1952	0.97894	2.363	2	0	Median	0.99518	1.1565	17.57	3	0	Median	1.0012	0.97347	2.2788	3	0	Median	0.86517	0.90199	10.183	2	0	Median	908360000	479210000	429150000	199970000	93608000	106360000	273850000	149680000	124160000	210220000	112030000	98196000	224320000	123890000	100430000	44538	1682	41925	269953;269954;269955;269956;269957;269958;269959;269960;269961;269962	362062;362063;362064;362065;362066;362067;362068;362069;362070;362071	362068			10	
SDESIKEEDKDQDEK	3	Unmodified	1793.7803	0.78029656	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	2		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	8.4062	8.1684	3	5.7758E-05	6105	160511_QHF_FH_JSI12i_1	119.31	84.107			1.2365	1.3031	20.344	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85131	1.0067	NaN	1	0	Median	1.5357	1.504	NaN	1	0	Median	1.2365	1.3031	NaN	1	0	Median	137120000	62956000	74164000	0	0	0	42933000	21454000	21480000	45252000	18141000	27111000	48934000	23361000	25573000	44539	1273	41926	269963;269964;269965	362072;362073;362074;362075	362075			4	
SDEWFAK	1	Unmodified	881.39193	0.3919329	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	37.175	36.41	2	0.0085196	32316	160511_QHF_FH_JSI9i_1	72.138	47.14			0.98186	0.97892	15.157	6	1	Median	1.1302	0.98772	NaN	1	0	Median	0.81326	0.9665	19.364	2	0	Median	1.0043	0.97021	NaN	1	0	Median	0.85539	0.93821	27.444	2	1	Median	468310000	232020000	236290000	42054000	16056000	25998000	160430000	83032000	77401000	108990000	56778000	52217000	156830000	76158000	80673000	44540	4850	41927	269966;269967;269968;269969;269970;269971;269972	362076;362077;362078;362079;362080;362081;362082;362083;362084;362085	362083			10	
SDFDEFER	0	Acetyl (Protein N-term)	1085.4302	0.4301689	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		5.4	5.39	3				2					1	2	2		57.915	55.093	2	7.454E-05	49168	160511_QHF_FH_JSI9i_1	133.12	133.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44541	1274	41928	269973;269974;269975;269976;269977	362086;362087;362088;362089;362090	362090			5	
SDFFELLSNHHLDSQSR	0	Unmodified	2030.9446	0.94461697	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			3								1	2		75.831	75.365	3;4	1.8706E-05	66945	160511_QHF_FH_JSI11i_3	81.428	77.524			1.0804	1.126	38.957	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0804	1.2285	NaN	1	0	Median	0.89758	0.82301	44.335	2	0	Median	NaN	NaN	NaN	0	0	Median	122150000	66831000	55317000	0	0	0	13660000	6916600	6743300	108490000	59914000	48574000	0	0	0	44542	203	41929	269978;269979;269980	362091;362092;362093;362094	362091			4	
SDFFINKR	1	Acetyl (K)	1067.54	0.53999412	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		62.53	51.615	2	0.043101	28141	160513_QHF_FH_JSI11Kac_5	63.48	53.892			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44543	2884	41930	269981	362095	362095			1	
SDFFLEGPFMPPR	0	Unmodified	1538.7228	0.72278587	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				99.393	99.145	2	0.00066012	80366	160511_QHF_FH_JSI9i_3	67.726	49.862			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44544	2084	41931	269982	362096	362096			1	
SDFFTSFYDK	1	Unmodified	1255.5397	0.53971935	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	76.899	75.656	2	0.022711	65352	160511_QHF_FH_JSI12i_2	61.353	52.49			0.91455	0.97231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91455	0.97231	NaN	1	0	Median	26293000	13671000	12621000	0	0	0	0	0	0	0	0	0	26293000	13671000	12621000	44545	1724	41932	269983	362097	362097			0	
SDFGKFVLSSGK	2	Acetyl (K)	1312.6663	0.66631685	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	2	1	76.816	66.246	2	1.4686E-06	35144	160513_QHF_FH_JSI10Kac_4	119.39	100.61			4.7191	5.2625	201.12	3	2	Median	NaN	NaN	NaN	0	0	Median	9.8702	11.606	NaN	1	1	Median	0.26189	0.25679	NaN	1	0	Median	4.7191	5.2625	NaN	1	1	Median	138800000	98543000	40261000	0	0	0	5723000	234290	5488700	128890000	97560000	31329000	4191600	748360	3443200	44546	1297	41933	269984;269985;269986;269987	362098;362099;362100;362101	362098	1224;1229		4	
SDFNNYVAAVYK	1	Unmodified	1389.6565	0.65648044	360	O43688	PPAP2C	Lipid phosphate phosphohydrolase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		64.351	63.605	2	3.6996E-05	57673	160511_QHF_FH_JSI11i_1	112.71	90.474			1.8398	1.6349	27.161	2	2	Median	1.6661	1.3492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0315	1.9811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	135510000	49772000	85742000	49038000	18984000	30054000	0	0	0	86476000	30788000	55688000	0	0	0	44547	360	41934	269988;269989	362102;362103	362102			2	
SDFQVNLNNASR	0	Unmodified	1363.648	0.64804102	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.67	6.13	2						4				3	1	2	47.38	41.819	2	4.3542E-05	38244	160511_QHF_FH_JSI12i_1	101.35	78.03			0.90493	0.96183	21.878	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1327	1.3151	NaN	1	0	Median	0.78577	0.77584	NaN	1	1	Median	0.90493	0.96183	4.3964	2	1	Median	126260000	61663000	64596000	0	0	0	70393000	36953000	33440000	1995800	1142500	853340	53870000	23568000	30302000	44548	442	41935	269990;269991;269992;269993;269994;269995	362104;362105;362106;362107;362108	362104			5	
SDFYDIVLVATPLNRK	1	Unmodified	1849.9938	0.993799	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	2	3	6	3	94.046	91.798	2;3	1.0092E-22	83491	160511_QHF_FH_JSI12i_3	177.88	171.15			1.041	1.0318	22.94	11	4	Median	1.1218	0.96432	20.375	2	1	Median	0.65553	0.75318	21.1	2	1	Median	1.2053	1.1548	16.875	5	2	Median	0.94481	0.96791	9.0442	2	0	Median	779040000	371800000	407240000	147370000	60070000	87298000	157900000	81063000	76839000	304710000	141100000	163610000	169060000	89566000	79493000	44549	5300	41936	269996;269997;269998;269999;270000;270001;270002;270003;270004;270005;270006;270007;270008;270009	362109;362110;362111;362112;362113;362114;362115;362116;362117;362118;362119;362120;362121;362122;362123;362124;362125;362126;362127;362128;362129	362125			20	
SDGAHFQK	1	Unmodified	888.40898	0.40897995	4492	Q9BW83	IFT27	Intraflagellar transport protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	5.9056	5.4997	3	0.0023178	3446	160511_QHF_FH_JSI9i_2	50.04	35.265			1.1222	1.0534	27.105	4	0	Median	1.216	1.0588	NaN	1	0	Median	0.80156	0.98269	NaN	1	0	Median	1.0357	1.048	NaN	1	0	Median	1.5749	1.7628	NaN	1	0	Median	363900000	171880000	192020000	56812000	26759000	30053000	93932000	50634000	43298000	141920000	73017000	68899000	71242000	21467000	49774000	44550	4492	41937	270010;270011;270012;270013	362130;362131	362130			2	
SDGALLLGASSLSGR	0	Unmodified	1402.7416	0.74160705	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.31	1	4					3	4		3	3	5	1	67.86	64.242	2	7.68E-08	55412	160511_QHF_FH_JSI12i_2	175.48	157.74			0.9121	0.90267	16.229	7	3	Median	1.0896	0.9106	1.2381	2	1	Median	0.72137	0.87068	NaN	1	0	Median	0.9121	0.89228	26.015	3	2	Median	0.85844	0.95983	NaN	1	0	Median	372160000	202070000	170090000	65289000	37812000	27477000	73626000	42573000	31053000	143110000	66512000	76600000	90132000	55171000	34961000	44551	4355	41938	270014;270015;270016;270017;270018;270019;270020;270021;270022;270023;270024;270025	362132;362133;362134;362135;362136;362137;362138;362139;362140;362141;362142;362143;362144	362133			13	
SDGAPAEGK	1	Unmodified	830.37701	0.37701112	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.9849	4.7582	2	0.0045667	2605	160511_QHF_FH_JSI11i_1	66.692	43.673			1.1543	1.1205	10.237	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1543	1.358	NaN	1	1	Median	1.1949	1.1604	NaN	1	1	Median	1.1094	1.1205	NaN	1	1	Median	377870000	181260000	196610000	0	0	0	122840000	57835000	65001000	124550000	59810000	64739000	130490000	63614000	66874000	44552	2469	41939	270026;270027;270028	362145;362146;362147	362145			3	
SDGAPASDSK	1	Unmodified	933.40395	0.40395415	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	5.21	5	1		3	4					4	2	3	4	4.8493	0.10842	2	7.7102E-06	2317	160511_QHF_FH_JSI11i_1	106.88	87.403			0.94655	0.93334	16.327	12	0	Median	1.2961	1.0148	5.0579	3	0	Plateau	0.99181	1.1915	2.1245	2	0	Median	0.92049	0.89499	11.371	3	0	Median	0.9269	0.97607	12.801	4	0	Linear	2536600000	1314600000	1221900000	207250000	94696000	112560000	683710000	379770000	303940000	700380000	347120000	353260000	945210000	493050000	452150000	44553	2101	41940	270029;270030;270031;270032;270033;270034;270035;270036;270037;270038;270039;270040;270041	362148;362149;362150;362151;362152;362153;362154;362155;362156;362157;362158;362159;362160;362161;362162;362163;362164;362165;362166	362148			18	
SDGAPASDSKPGSSEAAPSSK	2	Unmodified	1931.8708	0.87084291	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.65	8	4	6		2	4	2	1	1	6	8	7	7	12.906	9.7845	2;3	4.2624E-120	8328	160511_QHF_FH_JSI10i_1	323.47	293.78			0.93334	0.96517	20.457	26	0	Median	1.1999	1.0165	30.425	6	0	Median	0.79495	0.88936	23.698	8	0	Plateau	1.079	1.0267	7.0713	5	0	Median	0.85469	0.91453	11.887	7	0	Median	33512000000	14830000000	18682000000	7821500000	3480200000	4341300000	8296400000	3812300000	4484100000	8926400000	3704300000	5222100000	8468100000	3833400000	4634800000	44554	2101	41941	270042;270043;270044;270045;270046;270047;270048;270049;270050;270051;270052;270053;270054;270055;270056;270057;270058;270059;270060;270061;270062;270063;270064;270065;270066;270067;270068;270069	362167;362168;362169;362170;362171;362172;362173;362174;362175;362176;362177;362178;362179;362180;362181;362182;362183;362184;362185;362186;362187;362188;362189;362190;362191;362192;362193;362194;362195;362196;362197;362198;362199;362200;362201;362202;362203;362204;362205;362206;362207;362208;362209;362210;362211;362212;362213;362214;362215;362216;362217;362218	362194			52	
SDGDPIVDPEK	1	Unmodified	1170.5404	0.54044763	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		29.159	28.418	2	0.00010845	25102	160511_QHF_FH_JSI11i_1	85.807	14.252			1.0957	0.99258	23.517	2	1	Median	1.406	1.1722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85382	0.84052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	387970000	186210000	201750000	149070000	70633000	78436000	0	0	0	238900000	115580000	123320000	0	0	0	44555	3685	41942	270070;270071	362219;362220	362219			2	
SDGDYDYLIK	1	Acetyl (Protein N-term)	1229.5452	0.54519866	1731	P51159	RAB27A	Ras-related protein Rab-27A	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				67.178	66.167	2	0.00033594	58898	160511_QHF_FH_JSI9i_1	78.113	62.471			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11472000	0	11472000	11472000	0	11472000	0	0	0	0	0	0	0	0	0	44556	1731	41943	270072	362221	362221			1	
SDGEAKPEPSPSPR	1	Unmodified	1452.6845	0.68448611	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	9.6143	9.3698	3	0.0062625	7134	160511_QHF_FH_JSI10i_1	33.796	7.8137			0.57425	0.67817	4.8757	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57302	0.67936	NaN	1	0	Median	0.63725	0.61839	NaN	1	1	Median	0.62018	0.63382	NaN	1	1	Median	202720000	123800000	78913000	0	0	0	58976000	33847000	25130000	75463000	42421000	33043000	68276000	47536000	20740000	44557	1273	41944	270073;270074;270075	362222;362223;362224	362224			3	
SDGEMVLPGFPDADSFVK	1	Unmodified	1909.8768	0.87677991	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	98.382	98.212	2	1.2163E-10	89095	160511_QHF_FH_JSI11i_1	103.88	85.613			1.2259	1.2237	14.82	4	2	Median	1.4087	1.135	NaN	1	1	Median	1.1699	1.3193	NaN	1	0	Median	1.0227	0.99326	NaN	1	1	Median	1.2846	1.3729	NaN	1	0	Median	84349000	37135000	47215000	12521000	4465100	8056400	33742000	15127000	18615000	15392000	7655300	7736800	22694000	9887500	12807000	44558	2175	41945	270076;270077;270078;270079;270080	362225;362226;362227;362228;362229;362230;362231;362232	362226			8	
SDGEPMK	1	Unmodified	762.3218	0.32180442	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	5.7377	5.3851	2	0.045378	3416	160511_QHF_FH_JSI12i_1	44.721	33.905			0.8561	0.89714	12.968	3	0	Median	1.2059	0.99174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78172	0.76677	NaN	1	0	Median	0.8561	0.89714	NaN	1	0	Median	372180000	179580000	192600000	100290000	49181000	51109000	0	0	0	110320000	57648000	52674000	161570000	72748000	88822000	44559	2638;2895	41946	270081;270082;270083	362233	362233			1	
SDGGYTYDTSDLAAIK	1	Unmodified	1675.7577	0.75771063	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				3	5	3	3	62.423	58.847	2;3	2.8284E-65	53210	160511_QHF_FH_JSI10i_1	228.78	204.44			0.96305	1.0024	15.937	12	1	Median	1.1687	0.96028	9.216	2	0	Median	0.86841	1.0371	25.749	4	1	Median	0.98481	0.94618	14.688	3	0	Median	0.93271	1.0172	3.6481	3	0	Median	3200200000	1526300000	1673800000	877600000	393740000	483860000	750690000	386550000	364140000	830930000	391310000	439630000	740930000	354710000	386220000	44560	1818	41947	270084;270085;270086;270087;270088;270089;270090;270091;270092;270093;270094;270095;270096;270097	362234;362235;362236;362237;362238;362239;362240;362241;362242;362243;362244;362245;362246;362247;362248;362249;362250;362251;362252;362253;362254;362255;362256;362257;362258;362259;362260;362261	362248			28	
SDGIPMYK	1	Unmodified	909.4266	0.42660385	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	36.282	33.755	2	0.0014339	30277	160511_QHF_FH_JSI10i_1	89.55	74.111			0.91403	0.90456	6.8825	5	0	Median	0.96843	0.78828	NaN	1	0	Median	0.77746	0.90456	NaN	1	0	Median	0.94342	0.91551	4.2995	2	0	Median	0.86398	0.91245	NaN	1	0	Median	1240900000	621960000	618980000	284720000	116050000	168670000	335960000	191010000	144950000	371970000	182510000	189460000	248300000	132390000	115910000	44561	5280	41948	270098;270099;270100;270101;270102	362262;362263;362264;362265	362264			4	
SDGIYIINLK	1	Unmodified	1134.6285	0.62847478	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	5.63	6	4	3	2	2	6	11	8	4	11	15	12	8	73.488	66.148	1;2	1.0061E-33	36272	160513_QHF_FH_JSI11Kac_4	198.54	156.43			0.95742	1.0058	33.445	43	5	Median	1.1939	1.0038	55.196	11	2	Median	0.89822	1.0197	18.257	13	0	Median	1.0405	1.003	14.823	11	2	Median	0.93661	0.98511	31.009	8	1	Median	16258000000	7843200000	8415200000	4202800000	1877700000	2325200000	4673400000	2399600000	2273700000	4095700000	1924700000	2171000000	3286500000	1641200000	1645300000	44562	917	41949	270103;270104;270105;270106;270107;270108;270109;270110;270111;270112;270113;270114;270115;270116;270117;270118;270119;270120;270121;270122;270123;270124;270125;270126;270127;270128;270129;270130;270131;270132;270133;270134;270135;270136;270137;270138;270139;270140;270141;270142;270143;270144;270145;270146;270147;270148	362266;362267;362268;362269;362270;362271;362272;362273;362274;362275;362276;362277;362278;362279;362280;362281;362282;362283;362284;362285;362286;362287;362288;362289;362290;362291;362292;362293;362294;362295;362296;362297;362298;362299;362300;362301;362302;362303;362304;362305;362306;362307;362308;362309;362310;362311;362312;362313;362314;362315;362316;362317;362318;362319;362320;362321;362322;362323;362324;362325;362326;362327;362328;362329;362330;362331;362332;362333;362334;362335;362336;362337;362338;362339;362340;362341;362342;362343;362344;362345;362346;362347;362348;362349;362350;362351;362352	362307			87	
SDGIYIINLKR	1	Acetyl (K)	1332.7402	0.74015049	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	80.491	70.026	2	0.00016996	34951	160513_QHF_FH_JSI10Kac_5	102.61	67.385			0.21686	0.23515	136.8	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0384	1.2608	NaN	1	0	Median	0.085195	0.083863	NaN	1	1	Median	0.21686	0.23515	NaN	1	1	Median	48485000	41921000	6563500	0	0	0	6943100	3800900	3142300	38607000	35589000	3018000	2934800	2531600	403230	44563	917	41950	270149;270150;270151	362353;362354;362355	362355	676		3	
SDGPYALVLVPTR	0	Unmodified	1386.7507	0.75071518	4784	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.2	0.4							4	1			2	2	1	80.022	69.451	2	3.1625E-06	36894	160513_QHF_FH_JSI11Kac_4	123.8	104.53			1.115	1.0973	14.779	5	1	Median	NaN	NaN	NaN	0	0	Median	0.77851	0.91611	10.329	2	0	Median	1.1766	1.163	8.2303	2	1	Median	1.1203	1.1725	NaN	1	0	Median	15156000	7341700	7814100	0	0	0	6252800	3241600	3011200	5999500	2773000	3226600	2903400	1327100	1576300	44564	4784	41951	270152;270153;270154;270155;270156	362356;362357;362358;362359;362360	362357			4	
SDGQFKK	2	Unmodified	808.40792	0.40791731	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		2								1			1	4.7992	4.3167	2	0.043477	2490	160511_QHF_FH_JSI9i_2	46.016	21.813			0.82703	0.81589	10.912	2	0	Median	0.88517	0.7553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7727	0.88133	NaN	1	0	Median	114800000	60840000	53961000	66440000	32969000	33471000	0	0	0	0	0	0	48360000	27871000	20489000	44565	2460	41952	270157;270158	362361	362361			1	
SDGSAPSTSTASSK	1	Unmodified	1281.5685	0.56845329	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	6.7663	4.1313	2	0.00023204	3844	160511_QHF_FH_JSI11i_1	102.62	82.317			0.94278	0.91874	16.258	6	0	Median	0.9483	0.767	NaN	1	0	Median	0.71834	0.85427	NaN	1	0	Median	0.98695	0.95905	8.7297	2	0	Median	1.0227	1.074	19.423	2	0	Median	220170000	111600000	108570000	49244000	26071000	23173000	53627000	29274000	24354000	46447000	22296000	24152000	70850000	33960000	36890000	44566	4254	41953	270159;270160;270161;270162;270163;270164	362362;362363	362362			2	
SDGSGESAQPPEDSSPPASSESSSTR	0	Unmodified	2535.0481	0.048091582	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	20.101	19.732	2;3	5.7879E-31	17147	160511_QHF_FH_JSI12i_1	146.3	146.3			1.0559	1.0693	14.119	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2324	1.1815	NaN	1	1	Median	0.90466	0.96766	NaN	1	0	Median	83751000	38702000	45049000	0	0	0	0	0	0	36836000	14975000	21861000	46915000	23727000	23188000	44567	3290	41954	270165;270166;270167	362364;362365;362366;362367	362366			4	
SDGSLEDGDDVHR	0	Unmodified	1400.5804	0.58041496	4972	Q9NRX5	SERINC1	Serine incorporator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	12.697	12.299	2	0.001001	10142	160511_QHF_FH_JSI12i_1	77.124	64.888			1.6505	1.6314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6505	1.6314	NaN	1	1	Median	15229000	5100500	10128000	0	0	0	0	0	0	0	0	0	15229000	5100500	10128000	44568	4972	41955	270168;270169	362368;362369	362368			2	
SDGTETSTNLHQK	1	Unmodified	1416.6481	0.6481006	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	4.38	11	2					2			5	4	3	3	7.8293	6.2814	2;3	6.2913E-71	4803	160511_QHF_FH_JSI9i_1	278.83	223.77			1.0941	1.0736	17.976	14	6	Median	1.2524	1.0337	15.953	4	2	Median	0.83163	0.96321	18.247	4	2	Median	1.249	1.2043	26.908	3	2	Plateau	1.1486	1.2036	6.9015	3	0	Plateau	1507100000	763360000	743740000	354340000	145000000	209330000	455210000	256520000	198690000	351940000	170240000	181700000	345610000	191600000	154020000	44569	1615	41956	270170;270171;270172;270173;270174;270175;270176;270177;270178;270179;270180;270181;270182;270183;270184	362370;362371;362372;362373;362374;362375;362376;362377;362378;362379;362380;362381;362382;362383;362384;362385	362381			16	
SDGTLNPNGVR	0	Unmodified	1128.5523	0.55234972	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	18.411	17.627	2	0.0019485	14672	160511_QHF_FH_JSI9i_1	74.267	58.064			0.87648	0.81435	4.9772	2	1	Median	0.95065	0.78619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80809	0.84352	NaN	1	0	Median	126040000	62065000	63979000	62844000	32203000	30641000	0	0	0	0	0	0	63200000	29862000	33338000	44570	3335	41957	270185;270186	362386;362387	362387			1	
SDHLIQTDTVNLHR	0	Unmodified	1647.8329	0.83288168	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	36.632	35.288	2;3	2.0291E-07	29222	160511_QHF_FH_JSI12i_3	94.801	76.937			2.3457	2.5656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3457	2.5656	NaN	1	1	Median	18338000	3726500	14612000	0	0	0	0	0	0	0	0	0	18338000	3726500	14612000	44571	1729	41958	270187;270188	362388;362389	362389			2	
SDHPGISITDLSK	1	Unmodified	1368.6885	0.68850885	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	3.55	3	8	1					1		2	4	4	3	48.02	46.346	2;3	2.5307E-07	39646	160511_QHF_FH_JSI11i_2	137.89	121.22			0.94814	1.0266	6.953	13	2	Median	1.1209	0.94834	4.116	2	0	Median	0.82323	1.0214	9.5157	4	2	Median	1.0278	1.0457	4.9085	4	0	Median	0.91999	1.0359	8.3964	3	0	Plateau	1731200000	811170000	919990000	271350000	120870000	150480000	423770000	222420000	201340000	572760000	241480000	331280000	463290000	226400000	236890000	44572	2277	41959	270189;270190;270191;270192;270193;270194;270195;270196;270197;270198;270199;270200;270201	362390;362391;362392;362393;362394;362395;362396;362397;362398;362399;362400;362401;362402;362403;362404;362405;362406;362407;362408;362409;362410;362411;362412;362413;362414	362404			24	
SDIASHFSNK	1	Unmodified	1104.52	0.51998696	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	17.886	17.537	2	2.5064E-05	14529	160511_QHF_FH_JSI11i_3	101.65	72.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44573	4679	41960	270202;270203;270204	362415;362416;362417	362415			3	
SDIATLLK	1	Unmodified	859.50148	0.50148335	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	54.08	53.32	2	0.013012	48506	160511_QHF_FH_JSI12i_1	52.716	4.8675			0.97145	0.98587	6.3498	7	0	Median	1.1138	0.97261	NaN	1	0	Median	0.82163	0.96923	13.793	2	0	Median	0.99215	0.96981	5.4393	2	0	Median	0.9559	1.0031	2.4537	2	0	Median	194410000	100520000	93893000	18956000	7438300	11517000	51990000	29662000	22328000	79464000	41137000	38327000	43999000	22278000	21721000	44574	5626	41961	270205;270206;270207;270208;270209;270210;270211	362418;362419;362420	362419			3	
SDIAVPIPK	1	Unmodified	938.54368	0.54368251	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		53.363	52.563	2	6.3588E-06	47367	160511_QHF_FH_JSI10i_1	109.86	84.126			0.98562	0.87107	0.38266	2	0	Median	1.0701	0.87343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90777	0.86872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45570000	23119000	22450000	24290000	9415000	14875000	0	0	0	21280000	13704000	7575800	0	0	0	44575	2266	41962	270212;270213;270214	362421;362422;362423;362424	362422			4	
SDIDEIVLVGGSTR	0	Unmodified	1459.7518	0.75183739	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.48	8	1	1			2	2	4		3	7	2	6	71.776	67.442	2;3	3.0694E-30	35214	160513_QHF_FH_JSI12Kac_4	167.3	141.91			1.0314	1.0583	19.01	15	3	Median	1.0458	0.87765	7.5231	2	0	Median	0.83844	0.97922	18.492	5	1	Median	1.1171	1.0899	6.8827	2	0	Median	1.0589	1.1331	20.635	6	2	Median	3007300000	1552500000	1454800000	624690000	324950000	299750000	756320000	428040000	328280000	819070000	383350000	435720000	807220000	416160000	391060000	44576	982	41963	270215;270216;270217;270218;270219;270220;270221;270222;270223;270224;270225;270226;270227;270228;270229;270230;270231;270232	362425;362426;362427;362428;362429;362430;362431;362432;362433;362434;362435;362436;362437;362438;362439;362440;362441;362442;362443;362444;362445;362446;362447;362448;362449;362450;362451;362452;362453;362454;362455;362456;362457	362451			33	
SDIGEVILVGGMTR	0	Unmodified	1445.7548	0.75481428	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	5.64	7	8	6				2	4	1	7	8	6	7	79.986	76.759	2;3	3.8042E-52	69920	160511_QHF_FH_JSI10i_2	220.5	200.2			0.99924	1.0484	12.614	27	6	Median	1.1225	0.96001	15.285	7	4	Median	0.82898	0.99849	8.7628	7	1	Median	1.1417	1.1364	3.066	6	1	Median	0.99549	1.0603	4.9373	7	0	Median	4985300000	2385300000	2599900000	874430000	395150000	479280000	1351700000	718060000	633590000	1668400000	754220000	914170000	1090800000	517920000	572910000	44577	1480	41964	270233;270234;270235;270236;270237;270238;270239;270240;270241;270242;270243;270244;270245;270246;270247;270248;270249;270250;270251;270252;270253;270254;270255;270256;270257;270258;270259;270260	362458;362459;362460;362461;362462;362463;362464;362465;362466;362467;362468;362469;362470;362471;362472;362473;362474;362475;362476;362477;362478;362479;362480;362481;362482;362483;362484;362485;362486;362487;362488;362489;362490;362491;362492;362493;362494;362495;362496;362497	362496			40	
SDIGEVILVGGMTR	0	Oxidation (M)	1461.7497	0.7497289	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	5.09	1	3	1			4	5	9	1	3	9	3	9	73.195	65.19	2;3	2.238E-24	33413	160513_QHF_FH_JSI9Kac_5	158.4	95.24			0.90631	0.99356	15.51	21	8	Median	1.1801	0.998	2.6354	2	1	Median	0.8395	0.98656	6.7766	8	2	Median	1.053	1.0972	14.475	3	1	Median	0.92293	1.0103	23.815	8	4	Median	507040000	265100000	241940000	34061000	14025000	20036000	240350000	125810000	114540000	97855000	52149000	45706000	134780000	73113000	61664000	44578	1480	41964	270261;270262;270263;270264;270265;270266;270267;270268;270269;270270;270271;270272;270273;270274;270275;270276;270277;270278;270279;270280;270281;270282;270283;270284	362498;362499;362500;362501;362502;362503;362504;362505;362506;362507;362508;362509;362510;362511;362512;362513;362514;362515;362516;362517;362518;362519;362520;362521;362522;362523;362524	362500		1155	25	
SDIIFFQR	0	Unmodified	1024.5342	0.53418046	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.53	2	4	1				2	4	1	2	6	3	3	70.841	64.677	2	1.726E-32	32088	160513_QHF_FH_JSI10Kac_5	195.06	140.54			1.0169	0.98129	17.394	12	1	Median	1.105	0.93068	10.819	2	0	Median	0.77331	0.9157	15.092	5	0	Median	1.0507	1.0353	1.9388	3	1	Median	1.1391	1.2411	13.967	2	0	Median	1268200000	625080000	643160000	255040000	117390000	137650000	408070000	226840000	181230000	555940000	256800000	299130000	49206000	24060000	25146000	44579	2490	41965	270285;270286;270287;270288;270289;270290;270291;270292;270293;270294;270295;270296;270297;270298	362525;362526;362527;362528;362529;362530;362531;362532;362533;362534;362535;362536;362537;362538;362539;362540;362541;362542;362543;362544;362545;362546;362547	362546			23	
SDIVQLR	0	Unmodified	829.46577	0.46576654	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.67	5.91	1	1					1			1	1	1		34.288	30.522	2	0.0083149	26601	160511_QHF_FH_JSI9i_2	86.512	41.791			0.84245	0.84796	9.2577	3	2	Plateau	0.97418	0.84782	NaN	1	1	Median	0.72853	0.84796	NaN	1	1	Median	1.0007	0.99536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	280390000	181490000	98910000	133790000	92050000	41735000	138020000	84705000	53310000	8593700	4729500	3864300	0	0	0	44580	2147	41966	270299;270300;270301	362548;362549;362550	362550			3	
SDIWSLGITMIELAILR	0	Unmodified	1930.0598	0.05977007	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.05	99.334	3	0.00049002	58823	160513_QHF_FH_JSI10Kac_6	74.786	48.963			0.80877	0.9564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80877	0.9564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16876000	7485000	9390600	0	0	0	16876000	7485000	9390600	0	0	0	0	0	0	44581	1772	41967	270302	362551	362551			1	
SDIYVCMISFAHNVAAQGK	1	Unmodified	2109.9976	0.99758052	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.65		5	4						6	2	5	3	5	92.114	88.743	2;3	1.3089E-222	45077	160513_QHF_FH_JSI10Kac_6	320.49	299.64			1.0059	1.0762	21.041	15	8	Median	1.0159	0.87261	21.764	2	0	Median	0.90915	1.0762	9.4771	5	4	Median	0.83884	0.78843	12.852	3	1	Plateau	1.187	1.2455	11.254	5	3	Median	6152400000	2978800000	3173600000	118750000	57364000	61384000	1910100000	976630000	933480000	1379300000	707760000	671520000	2744300000	1237100000	1507200000	44582	1702	41968	270303;270304;270305;270306;270307;270308;270309;270310;270311;270312;270313;270314;270315;270316;270317	362552;362553;362554;362555;362556;362557;362558;362559;362560;362561;362562;362563;362564;362565;362566;362567;362568;362569;362570;362571;362572;362573;362574;362575;362576	362575			25	
SDIYVCMISFAHNVAAQGK	1	Oxidation (M)	2125.9925	0.99249514	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	72.777	63.606	3	2.5314E-11	33201	160513_QHF_FH_JSI12Kac_6	171.71	69.131			1.6433	1.4169	36.967	3	2	Median	1.6433	1.4169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94384	0.91525	NaN	1	0	Median	1.8088	1.9087	NaN	1	1	Median	161530000	64742000	96787000	38607000	15593000	23014000	0	0	0	45625000	24310000	21316000	77297000	24840000	52457000	44583	1702	41968	270318;270319;270320	362577;362578;362579;362580	362580		1377	4	
SDIYVCMISYAHNVAAQGK	1	Unmodified	2125.9925	0.99249514	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	82.059	73.941	3	1.6164E-09	41624	160513_QHF_FH_JSI10Kac_6	108.75	9.9583			1.272	1.4918	15.339	3	0	Median	NaN	NaN	NaN	0	0	Median	1.272	1.4918	NaN	1	0	Median	1.253	1.182	NaN	1	0	Median	1.4687	1.5787	NaN	1	0	Median	375650000	153830000	221830000	0	0	0	236430000	100780000	135650000	75596000	30540000	45056000	63630000	22511000	41120000	44584	1368	41969	270321;270322;270323	362581;362582;362583	362583			1	
SDKLPEEMGLLQGSSGDK	2	Unmodified	1889.9041	0.90405729	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	3	1	57.512	56.662	2;3	8.2249E-08	49057	160511_QHF_FH_JSI11i_2	133.14	104.33			0.94744	1.005	15.881	5	4	Median	0.86092	0.73812	NaN	1	1	Median	0.72627	0.87416	NaN	1	0	Median	1.0495	1.0393	4.7555	2	2	Median	0.94744	1.0613	NaN	1	1	Median	530250000	255020000	275230000	108860000	62311000	46546000	117280000	68583000	48699000	195020000	70338000	124680000	109090000	53784000	55309000	44585	1554	41970	270324;270325;270326;270327;270328;270329	362584;362585;362586;362587;362588;362589;362590	362587			7	
SDKLPYK	2	Acetyl (K);Acetyl (Protein N-term)	933.48075	0.48074791	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	53.835	44.467	2	0.0024478	18267	160513_QHF_FH_JSI12Kacf_1	57.559	38.082			0.8772	0.93586	19.619	5	0	Median	NaN	NaN	NaN	0	0	Median	0.91981	1.0651	2.0312	2	0	Median	0.682	0.66007	NaN	1	0	Median	0.85516	0.91756	2.7923	2	0	Median	33556000	18376000	15180000	0	0	0	11949000	5731500	6217900	7819600	5093000	2726700	13787000	7551200	6235900	44586	1234	41971	270330;270331;270332;270333;270334;270335	362591;362592;362593;362594;362595;362596;362597;362598;362599	362594	1112		9	
SDKLPYK	2	Acetyl (Protein N-term)	891.47018	0.47018322	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	1	0	1		By MS/MS			1	0	1										1			26.356	26.053	2	0.0051485	22977	160511_QHF_FH_JSI10i_1	61.999	34.474			20.545	24.137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20.545	24.137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88373000	7218400	81154000	0	0	0	88373000	7218400	81154000	0	0	0	0	0	0	44587	1234	41971	270336	362600	362600			1	
SDKPDMAEIEK	2	Acetyl (Protein N-term)	1303.5966	0.5965823	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.03	9	5	3	1	2	3	1			6	7	6	5	38.615	35.472	2	2.8396E-13	28842	160511_QHF_FH_JSI9i_3	68.657	56.431			0.80495	0.88777	327.56	22	11	Median	0.3108	0.26491	381.97	6	5	Median	0.75964	0.87756	299	7	2	Median	1.1083	1.0829	433.54	4	2	Median	0.83921	0.89811	314.62	5	2	Median	65455000000	32002000000	33454000000	15853000000	9127100000	6726100000	16495000000	8733500000	7761900000	19564000000	7769300000	11794000000	13543000000	6371800000	7171000000	44588	2004	41972	270337;270338;270339;270340;270341;270342;270343;270344;270345;270346;270347;270348;270349;270350;270351;270352;270353;270354;270355;270356;270357;270358;270359;270360	362601;362602;362603;362604;362605;362606;362607;362608;362609;362610;362611;362612;362613;362614;362615;362616;362617;362618;362619;362620;362621;362622;362623;362624;362625;362626;362627;362628;362629;362630;362631;362632;362633;362634;362635;362636;362637;362638;362639;362640	362621			40	
SDKPDMAEIEK	2	Acetyl (Protein N-term);Oxidation (M)	1319.5915	0.59149692	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	0	1	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	5.02	9	1				3				6	2	2	3	27.946	24.532	2	4.5595E-06	31259	160511_QHF_FH_JSI9i_1	41.54	18.8			1.0202	0.98889	141.45	11	1	Median	1.0966	0.93913	216.22	5	1	Median	0.90867	1.0706	11.226	2	0	Median	1.0818	1.0622	1.6766	2	0	Median	0.69496	0.73995	54.408	2	0	Median	13698000000	6647000000	7051500000	8638700000	4189700000	4449100000	1118800000	558280000	560480000	1411500000	629540000	781970000	2529500000	1269500000	1260000000	44589	2004	41972	270361;270362;270363;270364;270365;270366;270367;270368;270369;270370;270371;270372;270373	362641;362642;362643;362644;362645;362646;362647;362648;362649;362650;362651;362652;362653;362654;362655;362656;362657	362653		1664	17	
SDKPDMAEIEK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1361.6021	0.60206161	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	1	1	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.498				5	6						2	3	6	45.714	36.618	2	4.1364E-06	16516	160513_QHF_FH_JSI12Kac_2	73.499	52.629			0.91052	0.94093	31.89	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70414	0.68042	5.23	2	0	Median	0.9316	0.94093	23.959	3	0	Plateau	314710000	158460000	156250000	0	0	0	0	0	0	100440000	54389000	46048000	214270000	104070000	110200000	44590	2004	41972	270374;270375;270376;270377;270378;270379;270380;270381;270382;270383;270384	362658;362659;362660;362661;362662;362663;362664;362665;362666;362667;362668;362669;362670	362668	2031;2032	1664	13	
SDKPDMAEIEK	2	Acetyl (K);Acetyl (Protein N-term)	1345.6071	0.60714699	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.481				7	4						4	3	4	66.371	56.908	2	7.251E-12	22094	160513_QHF_FH_JSI10Kac_1	98.943	92.207			0.81973	0.88022	16.061	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77605	0.87017	23.699	2	0	Median	0.6966	0.70013	NaN	1	0	Median	0.8662	0.9025	3.5359	2	0	Median	615500000	343530000	271960000	0	0	0	179610000	100940000	78673000	248340000	147240000	101100000	187540000	95349000	92186000	44591	2004	41972	270385;270386;270387;270388;270389;270390;270391;270392;270393;270394;270395	362671;362672;362673;362674;362675;362676;362677;362678;362679;362680	362678	2031;2032		10	
SDKPDMAEIEKFDK	3	Acetyl (Protein N-term)	1693.7869	0.78690227	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	0	1	0	2	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	56.357	55.621	3	4.8509E-05	49445	160511_QHF_FH_JSI9i_1	53.168	33.845			0.4029	0.32445	71.34	3	0	Plateau	0.4029	0.32445	NaN	1	0	Median	0.73946	0.85485	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2699	1.3046	NaN	1	0	Median	451490000	298890000	152600000	239010000	176280000	62729000	115870000	78917000	36949000	0	0	0	96613000	43696000	52916000	44592	2004	41973	270396;270397;270398	362681;362682;362683;362684	362684			4	
SDKPDMAEIEKFDK	3	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1751.7924	0.79238157	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	1	1	2		By MS/MS	By MS/MS		12.8	0.433					1	3					2	2		63.282	53.779	3	0.00040211	28072	160513_QHF_FH_JSI11Kac_3	30.133	22.763			0.16894	0.16653	184.7	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0415	1.1857	NaN	1	0	Median	0.16894	0.16653	206.25	2	1	Median	NaN	NaN	NaN	0	0	Median	13929000	8553500	5375100	0	0	0	4272900	853040	3419800	9655700	7700400	1955300	0	0	0	44593	2004	41973	270399;270400;270401;270402	362685;362686;362687;362688	362685	2031;2032	1664	3	
SDKPDMAEIEKFDK	3	Acetyl (K);Acetyl (Protein N-term)	1735.7975	0.79746695	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	1	0	2			By MS/MS		13	0						1						1		76.099	67.448	2	0.042093	32991	160513_QHF_FH_JSI11Kac_3	48.004	34.803			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1893500	1893500	0	0	0	0	0	0	0	1893500	1893500	0	0	0	0	44594	2004	41973	270403	362689	362689	2031;2032		1	
SDKPDMAEIEKFDK	3	2 Acetyl (K)	1735.7975	0.79746695	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	1	2	75.987	67.515	3	0.00055083	32928	160513_QHF_FH_JSI10Kac_3	68.944	58			0.15367	0.16953	284.44	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1249	1.2669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.02099	0.022685	NaN	1	1	Median	14486000	8727900	5758400	0	0	0	2226700	1198500	1028100	1080700	1080700	0	11179000	6448700	4730300	44595	2004	41973	270404;270405;270406;270407	362690;362691;362692;362693	362693	2031;2032		4	
SDKPDMAEIEKFDK	3	2 Acetyl (K);Oxidation (M)	1751.7924	0.79238157	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	2	0	1	2		By MS/MS		By MS/MS	12.8	0.433					1	3					1		3	63.195	53.867	3	0.00044973	23876	160513_QHF_FH_JSI12Kac_2	79.022	66.662			0.58107	0.66342	10.913	2	0	Median	NaN	NaN	NaN	0	0	Median	0.51936	0.61416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65011	0.71664	NaN	1	0	Median	28241000	14297000	13944000	0	0	0	9754800	6308300	3446500	0	0	0	18486000	7989100	10497000	44596	2004	41973	270408;270409;270410;270411	362694;362695;362696;362697	362697	2031;2032	1664	4	
SDKTEEIAEEEETVFPK	2	Unmodified	1979.9211	0.92114714	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.535	1	5	1							2	1	1	3	59.15	58.35	3	2.216E-06	50556	160511_QHF_FH_JSI11i_2	100.04	83.903			0.81135	0.6735	22.529	7	2	Linear	1.0578	0.90526	16.784	2	1	Median	0.81135	1.009	NaN	1	0	Median	0.60699	0.61954	NaN	1	0	Median	0.7253	0.73888	25.596	3	1	Plateau	591170000	314850000	276310000	121860000	48317000	73546000	67591000	35259000	32331000	139440000	86897000	52539000	262280000	144380000	117900000	44597	4940	41974	270412;270413;270414;270415;270416;270417;270418	362698;362699;362700;362701;362702;362703;362704;362705;362706;362707	362705			10	
SDLAVPSELALLK	1	Unmodified	1354.7708	0.77078192	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	88.189	87.657	2	3.0399E-06	77867	160511_QHF_FH_JSI9i_1	126.71	102.62			1.0231	1.0286	4.8828	8	0	Median	1.2316	1.0204	2.0346	2	0	Median	0.85408	1.0213	3.2207	2	0	Median	1.0689	1.0406	9.1265	2	0	Median	0.99699	1.0691	6.3567	2	0	Median	746790000	376110000	370690000	175430000	78001000	97433000	196640000	107350000	89284000	195030000	101490000	93547000	179690000	89270000	90422000	44598	2271	41975	270419;270420;270421;270422;270423;270424;270425;270426;270427	362708;362709;362710;362711;362712;362713;362714;362715;362716;362717;362718;362719;362720;362721;362722;362723;362724;362725	362719			17	
SDLDSLK	1	Unmodified	776.3916	0.39159855	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.406	21.876	2	0.014083	18663	160511_QHF_FH_JSI9i_1	67.981	15.298			0.91214	0.96241	36.149	4	2	Median	0.7416	0.60938	NaN	1	1	Median	0.74696	0.85439	NaN	1	0	Median	1.1138	1.0841	NaN	1	0	Median	1.3886	1.4282	NaN	1	1	Median	454310000	249010000	205300000	92997000	52618000	40379000	119790000	74511000	45283000	123900000	61037000	62867000	117610000	60846000	56768000	44599	2817	41976	270428;270429;270430;270431	362726;362727;362728;362729;362730	362730			5	
SDLDTLLSMEMK	1	Unmodified	1381.6469	0.64690331	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	88.864	88.555	2	8.162E-06	80374	160511_QHF_FH_JSI10i_1	97.734	80.298			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44600	4141	41977	270432;270433;270434	362731;362732;362733	362733			3	
SDLEHFMLVR	0	Unmodified	1245.6176	0.61759251	4340	Q9BPY3	FAM118B	Protein FAM118B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	64.457	63.564	3	3.8713E-05	55330	160511_QHF_FH_JSI11i_2	83	44.366			1.0178	0.99967	16.253	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0178	1.3034	NaN	1	0	Median	1.0166	0.95584	NaN	1	0	Median	1.0891	1.2143	NaN	1	0	Median	44951000	21709000	23242000	0	0	0	13240000	6229200	7011000	16578000	7299400	9279100	15132000	8180100	6952100	44601	4340	41978	270435;270436;270437	362734;362735;362736;362737;362738	362737			5	
SDLESRR	0	Unmodified	861.43044	0.43044367	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	1		By MS/MS			2	0		1									1			4.8946	4.4876	2	0.038317	2531	160511_QHF_FH_JSI10i_2	60.508	20.405			0.80862	1.0029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80862	1.0029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178300000	85464000	92831000	0	0	0	178300000	85464000	92831000	0	0	0	0	0	0	44602	1930	41979	270438	362739	362739			1	
SDLETQISSLNEK	1	Unmodified	1462.7151	0.71511753	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				53.778	52.589	2	0.00014891	46726	160511_QHF_FH_JSI9i_1	107.85	88.085			0.74129	0.60674	NaN	1	1	Median	0.74129	0.60674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26997000	10950000	16047000	26997000	10950000	16047000	0	0	0	0	0	0	0	0	0	44603	4561	41980	270439	362740	362740			1	
SDLFLKHK	2	Acetyl (K)	1028.5655	0.56548059	352	O43665	RGS10	Regulator of G-protein signaling 10	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		45.883	36.225	2;3	0.04289	19763	160513_QHF_FH_JSI11Kac_6	66.073	48.087			0.22887	0.22878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22887	0.22878	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2709900	2384500	325440	0	0	0	0	0	0	2709900	2384500	325440	0	0	0	44604	352	41981	270440;270441	362741;362742	362742			2	
SDLIEVATR	0	Unmodified	1002.5346	0.53457439	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	5.88		2					3			1	1	1	2	50.271	42.07	2	0.00038646	36318	160511_QHF_FH_JSI12i_2	85.731	51.642			1.1886	1.1153	9.3299	4	0	Median	1.2622	1.0939	NaN	1	0	Median	0.90506	1.0564	NaN	1	0	Median	1.177	1.1372	NaN	1	0	Median	1.2003	1.3069	NaN	1	0	Median	41826000	24343000	17483000	34033000	19646000	14387000	3147300	2363500	783820	2796200	1429100	1367100	1849800	905090	944750	44605	5330	41982	270442;270443;270444;270445;270446	362743;362744;362745;362746;362747	362743			5	
SDLIPTIK	1	Unmodified	885.51713	0.51713341	2565	Q14691	GINS1	DNA replication complex GINS protein PSF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.014	53.264	2	0.0028151	47962	160511_QHF_FH_JSI10i_1	75.738	23.335			0.94934	0.96077	17.245	3	2	Median	0.85892	0.7273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0392	0.99708	NaN	1	1	Median	0.94934	0.96077	NaN	1	1	Median	90140000	45243000	44897000	29770000	16914000	12855000	0	0	0	31812000	13549000	18263000	28558000	14780000	13778000	44606	2565	41983	270447;270448;270449;270450	362748;362749;362750;362751	362750			4	
SDLLLSGR	0	Unmodified	859.47633	0.47633123	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	36.077	35.135	2	0.0035931	29907	160511_QHF_FH_JSI12i_2	71.379	24.716			1.4099	1.5381	4.1199	4	0	Median	1.7502	1.5178	NaN	1	0	Median	1.2993	1.5848	NaN	1	0	Median	1.5299	1.5586	NaN	1	0	Median	1.2849	1.4422	NaN	1	0	Median	408910000	181180000	227730000	77858000	29115000	48743000	85543000	41670000	43873000	135490000	57874000	77613000	110020000	52523000	57499000	44607	197	41984	270451;270452;270453;270454	362752;362753;362754;362755;362756;362757	362752			6	
SDLLLSGRDWNTLIVGK	1	Unmodified	1886.0262	0.026161756	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	1	2	88.296	85.119	3	0.00044107	40493	160513_QHF_FH_JSI12Kac_6	83.253	45.698			1.465	1.3168	15.484	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.465	1.3168	NaN	1	0	Median	1.0649	1.0866	15.276	2	2	Median	124790000	56206000	68581000	0	0	0	0	0	0	34208000	11169000	23039000	90579000	45037000	45542000	44608	197	41985	270455;270456;270457;270458	362758;362759;362760;362761	362761			4	
SDLLSAIR	0	Unmodified	873.49198	0.4919813	5750	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		53.744	53.017	2	0.0027493	45872	160511_QHF_FH_JSI11i_2	85.212	35.853			0.71982	0.79569	6.8893	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60642	0.75786	NaN	1	1	Median	0.85443	0.83541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89442000	49164000	40278000	0	0	0	40496000	24618000	15878000	48946000	24546000	24400000	0	0	0	44609	5750	41986	270459;270460	362762;362763	362762			2	
SDLLVYSSKWK	2	Acetyl (K)	1366.7133	0.71326704	1083	P15822	HIVEP1	Zinc finger protein 40	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		79.011	68.424	2	3.6483E-08	36341	160513_QHF_FH_JSI11Kac_5	120.09	85.558			5.883	5.6437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.883	5.6437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2441400	292100	2149300	0	0	0	0	0	0	2441400	292100	2149300	0	0	0	44610	1083	41987	270461;270462	362764;362765	362764	925		2	
SDLQMAVLSFEK	1	Unmodified	1366.6803	0.68025235	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	81.613	80.807	2	6.8107E-08	71030	160511_QHF_FH_JSI11i_2	138.45	121.22			0.88056	0.99171	20.727	3	1	Median	1.2014	1.0098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70056	0.6991	NaN	1	0	Median	0.88056	0.99171	NaN	1	1	Median	98791000	50549000	48242000	22604000	10654000	11950000	0	0	0	46152000	25587000	20566000	30034000	14308000	15726000	44611	5	41988	270463;270464;270465	362766;362767	362767			2	
SDLQMQK	1	Unmodified	848.4062	0.40620276	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	12.677	12.258	2	0.0089406	9825	160511_QHF_FH_JSI11i_1	81.297	48.826			0.9076	0.6163	34.242	4	0	Linear	1.2285	1.0001	NaN	1	0	Median	0.66087	0.76549	NaN	1	0	Median	0.67055	0.65538	NaN	1	0	Median	1.3477	1.4323	NaN	1	0	Median	1195300000	592450000	602890000	283720000	143720000	140010000	310890000	186610000	124280000	349110000	158450000	190660000	251620000	103670000	147950000	44612	4322	41989	270466;270467;270468;270469;270470	362768;362769;362770;362771;362772;362773;362774	362768			7	
SDLTVDAVK	1	Unmodified	946.49713	0.49712625	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	34.578	30.914	2	0.00016337	27131	160511_QHF_FH_JSI9i_1	88.177	59.959			1.0841	1.1526	41.116	8	3	Median	1.3321	1.1053	NaN	1	0	Median	1.1398	1.3506	28.002	3	1	Plateau	1.3055	1.2638	35.852	2	0	Median	0.8316	0.88844	87.825	2	2	Median	579960000	273430000	306530000	119370000	53346000	66024000	256210000	133110000	123100000	112330000	43674000	68657000	92051000	43300000	48751000	44613	2904	41990	270471;270472;270473;270474;270475;270476;270477;270478	362775;362776;362777;362778;362779	362778			5	
SDLVFLADLRPEEIR	0	Unmodified	1771.9468	0.9468488	3619	Q8NCH0	CHST14	Carbohydrate sulfotransferase 14	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	91.778	90.956	3	0.00084447	78513	160511_QHF_FH_JSI12i_2	58.487	52.455			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44614	3619	41991	270479	362780	362780			1	
SDLVLLYELK	1	Unmodified	1191.6751	0.67509062	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	88.322	87.567	2	0.0040007	75699	160511_QHF_FH_JSI12i_2	82.749	60.009			0.80532	0.81404	17.871	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95001	0.92369	NaN	1	0	Median	0.68267	0.71741	NaN	1	0	Median	23073000	12510000	10563000	0	0	0	0	0	0	9416100	4543700	4872500	13657000	7966300	5690400	44615	4900	41992	270480;270481	362781	362781			0	
SDLVNWFK	1	Unmodified	1007.5076	0.50763136	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	73.061	72.292	2	2.7946E-06	64269	160511_QHF_FH_JSI10i_2	141.78	111.6			1.2199	1.066	16.727	5	1	Median	1.2199	1.0348	NaN	1	0	Median	0.78046	0.96491	NaN	1	0	Median	1.2262	1.212	18.156	2	1	Median	1.233	1.3733	NaN	1	0	Median	375670000	184230000	191450000	52244000	22898000	29346000	81308000	47860000	33448000	135570000	66671000	68896000	106560000	46798000	59757000	44616	387	41993	270482;270483;270484;270485;270486	362782;362783;362784;362785;362786;362787	362787			6	
SDLYSSGR	0	Unmodified	883.40356	0.40356022	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	11.826	10.202	2	0.0018444	8647	160511_QHF_FH_JSI12i_1	84.568	61.548			0.79004	0.89075	12.362	6	1	Linear	1.0275	0.84931	NaN	1	0	Median	0.7132	0.866	16.196	2	1	Median	0.73371	0.72442	11.829	2	0	Median	0.77878	0.82162	NaN	1	0	Median	1965700000	1073600000	892050000	486250000	238320000	247920000	616490000	353980000	262510000	423070000	207510000	215560000	439880000	273820000	166060000	44617	1474	41994	270487;270488;270489;270490;270491;270492	362788;362789;362790;362791;362792;362793	362789			5	
SDMDLRR	0	Unmodified	891.42325	0.4232498	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	1	2	1	10.208	9.9691	2	0.011314	7629	160511_QHF_FH_JSI11i_3	71.852	38.495			1.1629	1.1727	9.8624	5	0	Median	1.3918	1.2073	NaN	1	0	Median	1.0965	1.3542	NaN	1	0	Median	1.1639	1.1286	5.4172	2	0	Median	1.0186	1.0534	NaN	1	0	Median	487700000	240190000	247510000	78685000	36205000	42480000	100840000	51872000	48973000	194760000	94085000	100670000	113420000	58030000	55385000	44618	1524;1941	41995	270493;270494;270495;270496;270497	362794;362795	362794			2	
SDMGVGVFTPTIEAR	0	Unmodified	1578.7712	0.77119262	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		73.404	72.59	2	2.171E-11	63686	160511_QHF_FH_JSI11i_2	103.75	94.064			1.4116	1.2408	NaN	1	1	Median	1.4116	1.2408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12875000	6684200	6190700	12875000	6684200	6190700	0	0	0	0	0	0	0	0	0	44619	971	41996	270498;270499	362796;362797	362797			2	
SDMMEENIDTSAQAVAETK	1	Unmodified	2068.8929	0.89290026	2116	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	1	3	2	60.463	59.877	2;3	1.4505E-117	54409	160511_QHF_FH_JSI12i_1	270.06	258.85			0.97111	1.0421	11.604	7	3	Median	1.3688	1.1159	NaN	1	1	Median	0.87375	1.0421	NaN	1	0	Median	1.0921	1.0665	14.094	3	2	Median	0.88393	0.92033	5.7974	2	0	Median	510760000	233720000	277030000	52254000	18303000	33952000	53860000	31659000	22201000	210130000	85679000	124450000	194510000	98084000	96426000	44620	2116	41997	270500;270501;270502;270503;270504;270505;270506;270507;270508	362798;362799;362800;362801;362802;362803;362804;362805;362806;362807;362808;362809;362810;362811	362803			14	
SDMMSHLVK	1	Unmodified	1046.4889	0.48888653	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.3	0.458		7	3							3	1	3	3	32.435	31.552	2;3	3.6249E-05	26690	160511_QHF_FH_JSI11i_2	89.029	83.248			1.0909	1.116	20.268	9	1	Median	1.4403	1.2251	6.9421	3	1	Median	1.2342	1.5209	NaN	1	0	Median	0.99943	1.004	12.933	2	0	Median	0.86854	0.95901	20.28	3	0	Median	1087800000	527030000	560770000	226350000	88583000	137760000	61705000	28451000	33253000	493170000	262760000	230400000	306580000	147230000	159350000	44621	1410	41998	270509;270510;270511;270512;270513;270514;270515;270516;270517;270518	362812;362813;362814;362815;362816;362817;362818	362818			7	
SDMMSHLVK	1	Oxidation (M)	1062.4838	0.48380115	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	0		By MS/MS		By matching	2	0		2									1		1	32.904	31.77	3	0.004255	27770	160511_QHF_FH_JSI10i_2	44.318	35.405			0.82454	0.94391	60.643	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1672	1.4493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58247	0.61476	NaN	1	0	Median	48128000	26918000	21210000	0	0	0	24483000	13026000	11457000	0	0	0	23645000	13892000	9753400	44622	1410	41998	270519;270520	362819	362819		1060;1061	1	
SDMMSHLVK	1	2 Oxidation (M)	1078.4787	0.47871577	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	2	0		By MS/MS			2	0		1									1			32.584	31.64	3	0.012542	27780	160511_QHF_FH_JSI10i_2	37.065	30.405			0.69093	0.84882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69093	0.84882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34601000	21186000	13414000	0	0	0	34601000	21186000	13414000	0	0	0	0	0	0	44623	1410	41998	270521	362820	362820		1060;1061	1	
SDMNTVLNYIFSHAQVTK	1	Unmodified	2067.0095	0.0095254139	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			2						2	1		2	1	98.922	95.947	3	1.188E-41	88215	160511_QHF_FH_JSI12i_3	204.23	189.14			0.95928	0.99004	12.941	3	1	Plateau	1.4493	1.2657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1197	1.043	NaN	1	1	Median	0.95928	0.99004	NaN	1	0	Median	744550000	338460000	406090000	81614000	38969000	42644000	0	0	0	218330000	82634000	135700000	444600000	216850000	227750000	44624	2348	41999	270522;270523;270524;270525	362821;362822;362823;362824	362824			4	
SDMNTVLNYIFSHAQVTKK	2	Unmodified	2195.1045	0.10448843	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	100.94	100.85	4	8.4066E-10	87459	160511_QHF_FH_JSI12i_3	117.55	109.39			0.99502	0.93991	9.2067	4	0	Median	1.1478	0.94372	NaN	1	0	Median	0.97283	1.1279	NaN	1	0	Median	1.0177	0.93612	NaN	1	0	Median	0.93376	0.93538	NaN	1	0	Median	208720000	111180000	97545000	27645000	11788000	15858000	38227000	20641000	17586000	51412000	23767000	27645000	91438000	54980000	36458000	44625	2348	42000	270526;270527;270528;270529	362825;362826	362826			2	
SDMYILNESLTDPAIVK	1	Unmodified	1907.955	0.95503023	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	90.204	89.869	2;3	1.7526E-06	81804	160511_QHF_FH_JSI12i_1	117.93	98.833			0.79526	0.79325	31.043	4	1	Median	NaN	NaN	NaN	0	0	Median	0.5735	0.65089	NaN	1	0	Median	1.3666	1.312	NaN	1	0	Median	0.79526	0.79325	14.18	2	1	Median	82656000	41967000	40690000	0	0	0	31630000	20864000	10766000	20220000	6998100	13222000	30806000	14104000	16702000	44626	2175	42001	270530;270531;270532;270533	362827;362828;362829;362830;362831;362832;362833	362831			7	
SDNGELEDKPPAPPVR	1	Acetyl (Protein N-term)	1761.8533	0.85334235	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.918	43.255	2	3.2643E-30	39099	160511_QHF_FH_JSI11i_1	98.353	92.63			1.11	0.98738	14.762	4	0	Median	1.0862	0.89668	NaN	1	0	Median	0.74924	0.8806	NaN	1	0	Median	1.1351	1.0873	NaN	1	0	Median	1.1343	1.1906	NaN	1	0	Median	528110000	256780000	271330000	120790000	62313000	58481000	134850000	76699000	58153000	149210000	68244000	80962000	123260000	49526000	73734000	44627	2366	42002	270534;270535;270536;270537	362834;362835;362836;362837;362838;362839;362840;362841	362835			8	
SDNIKPK	2	Acetyl (K)	842.44978	0.44978213	2748	Q16637	SMN1	Survival motor neuron protein	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		16.853	9.4559	2	0.0071832	7256	160513_QHF_FH_JSI11Kac_3	96.492	33.774			0.44916	0.43494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44916	0.43494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9816600	6419000	3397500	0	0	0	0	0	0	9816600	6419000	3397500	0	0	0	44628	2748	42003	270538	362842	362842	2663		1	
SDNVLLGMEGSVK	1	Unmodified	1347.6704	0.67041595	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		61.022	60.589	2	5.0701E-07	54992	160511_QHF_FH_JSI11i_1	94.402	60.512			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44629	2366	42004	270539	362843	362843			1	
SDPDLVAQNIDVVLNRR	0	Unmodified	1923.0174	0.017387984	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	78.113	77.979	3	6.9254E-05	69565	160511_QHF_FH_JSI11i_3	68.944	63.515			1.015	0.97533	6.3862	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99835	0.93227	NaN	1	0	Median	1.0319	1.0204	NaN	1	0	Median	65881000	40467000	25414000	0	0	0	0	0	0	35597000	21820000	13777000	30284000	18647000	11637000	44630	5257	42005	270540;270541	362844;362845;362846;362847	362845			4	
SDPDPKAPANK	2	Acetyl (K)	1180.5724	0.57241646	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	12	0					3						1	1	1	20.453	13.363	2	0.0025447	7066	160513_QHF_FH_JSI10Kac_2	75.378	67.453			1.0644	1.1758	13.848	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9969	1.1655	NaN	1	0	Median	0.95009	0.92107	NaN	1	0	Median	1.1365	1.1758	NaN	1	0	Median	12120000	6039400	6080300	0	0	0	4455900	2513000	1943000	2322000	1170200	1151800	5341800	2356300	2985600	44631	997	42006	270542;270543;270544	362848;362849;362850;362851	362848	789		4	
SDPDVER	0	Unmodified	816.36136	0.36136105	189	O14684	PTGES	Prostaglandin E synthase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	7.2964	6.9278	2	0.019031	4824	160511_QHF_FH_JSI12i_1	58.981	18.878			1.003	0.9563	10.31	3	1	Plateau	1.0914	0.90104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.122	1.1013	NaN	1	1	Median	0.92179	0.9563	NaN	1	0	Median	539580000	264280000	275310000	154960000	69536000	85426000	0	0	0	190720000	91976000	98743000	193900000	102760000	91139000	44632	189	42007	270545;270546;270547	362852;362853	362853			2	
SDPEGENIHAGLLK	1	Unmodified	1478.7365	0.73652168	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.287	1	10								2	3	4	2	37.899	37.013	2;3	6.7502E-05	32449	160511_QHF_FH_JSI10i_2	68.262	56.822			1.0592	1.1072	22.594	10	4	Median	1.5328	1.3011	23.803	2	1	Median	0.93447	1.1484	15.109	3	2	Median	1.0895	1.0804	11.049	3	0	Plateau	1.1741	1.3174	41.615	2	1	Median	741130000	373110000	368020000	105790000	45388000	60404000	182030000	98505000	83527000	317940000	168700000	149240000	135370000	60523000	74845000	44633	3111	42008	270548;270549;270550;270551;270552;270553;270554;270555;270556;270557;270558	362854;362855;362856;362857;362858;362859;362860	362858			7	
SDPFLEFFR	0	Unmodified	1156.5553	0.55530983	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	95.608	95.351	2	8.4007E-07	82257	160511_QHF_FH_JSI12i_2	136.27	128.34			1.0428	1.0848	2.896	5	1	Median	1.2493	1.0408	NaN	1	0	Median	0.87203	1.0848	NaN	1	0	Median	1.1143	1.0868	4.1783	2	1	Median	0.97427	1.0935	NaN	1	0	Median	465200000	236300000	228900000	63256000	27948000	35308000	102870000	56446000	46420000	189100000	97347000	91756000	109980000	54559000	55420000	44634	4320	42009	270559;270560;270561;270562;270563	362861;362862;362863;362864;362865;362866;362867;362868	362863			8	
SDPFLVFYR	0	Unmodified	1142.576	0.57604528	3387	Q86YQ8;Q9HCH3;Q8IYJ1	CPNE8;CPNE5;CPNE9	Copine-8;Copine-5;Copine-9	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.37		3						2		1	2	1	1	82.987	78.337	2	0.0023089	71556	160511_QHF_FH_JSI11i_2	65.252	51.673			1.2093	1.185	36.27	5	2	Median	1.3871	1.185	NaN	1	0	Median	1.4103	1.6844	60.804	2	2	Median	1.2093	1.2573	NaN	1	0	Median	0.99037	1.1139	NaN	1	0	Median	120310000	55298000	65011000	1601600	701230	900320	46045000	19052000	26994000	36326000	17777000	18549000	36336000	17768000	18568000	44635	3387	42010	270564;270565;270566;270567;270568	362869;362870;362871;362872;362873;362874;362875	362873			7	
SDPGLLTNTMDVFVK	1	Unmodified	1635.8178	0.81780846	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	94.708	94.304	2	2.7045E-65	85765	160511_QHF_FH_JSI12i_1	228.78	208.79			0.92416	0.94493	19.399	12	3	Median	0.92984	0.76481	15.335	3	0	Median	0.82074	0.97542	25.307	3	1	Median	0.99341	0.93663	11.725	3	1	Median	0.90576	0.95331	22.452	3	1	Median	1654500000	867330000	787140000	227510000	115080000	112430000	579550000	314460000	265090000	363280000	181090000	182190000	484140000	256700000	227440000	44636	2094	42011	270569;270570;270571;270572;270573;270574;270575;270576;270577;270578;270579;270580	362876;362877;362878;362879;362880;362881;362882;362883;362884;362885;362886;362887;362888;362889;362890;362891;362892;362893;362894;362895;362896;362897;362898;362899	362883			24	
SDPIMLLK	1	Unmodified	915.50994	0.50993955	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	61.778	61.002	2	0.0033407	53492	160511_QHF_FH_JSI9i_2	79.116	68.243			0.1896	0.19309	21.911	8	8	Median	0.20655	0.17128	24.781	2	2	Median	0.1654	0.20154	18.763	2	2	Median	0.17447	0.17265	7.9923	2	2	Median	0.23638	0.258	11.284	2	2	Median	6156900000	5581700000	575260000	1185900000	1072900000	112980000	1559800000	1439500000	120350000	2184100000	1987900000	196220000	1227100000	1081400000	145710000	44637	903	42012	270581;270582;270583;270584;270585;270586;270587;270588	362900;362901;362902;362903;362904;362905;362906;362907;362908;362909;362910	362907			11	
SDPIMLLKDR	1	Acetyl (K);Oxidation (M)	1244.6435	0.64347291	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	0.653						2	8	5		2	6	4	3	76.606	66.304	2	7.8785E-13	35389	160513_QHF_FH_JSI11Kac_4	159.4	137.94			0.95277	1.0485	14.282	15	0	Median	1.1601	1.0323	3.889	2	0	Median	0.88349	1.045	17.477	6	0	Median	0.98675	0.97835	17.324	4	0	Median	1.0282	1.0885	4.874	3	0	Plateau	640280000	336740000	303540000	25509000	11220000	14289000	261980000	142200000	119780000	84203000	44327000	39876000	268590000	138990000	129600000	44638	903	42013	270589;270590;270591;270592;270593;270594;270595;270596;270597;270598;270599;270600;270601;270602;270603	362911;362912;362913;362914;362915;362916;362917;362918;362919;362920;362921;362922;362923;362924;362925;362926;362927;362928;362929	362917	660	481	18	
SDPIMLLKDR	1	Acetyl (K)	1228.6486	0.64855829	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.917						2	3	4	1	1	3	2	4	79.408	69.428	2	4.1091E-09	35538	160513_QHF_FH_JSI9Kac_5	146.11	146.11			1.0666	0.94331	10.708	10	0	Linear	1.3688	1.1491	NaN	1	0	Median	0.86336	0.9343	13.967	3	0	Plateau	1.0849	1.0576	0.81115	2	0	Median	1.0828	1.0705	9.8316	4	0	Linear	944180000	489830000	454350000	38784000	17879000	20906000	524270000	280650000	243610000	94534000	45564000	48969000	286600000	145730000	140870000	44639	903	42013	270604;270605;270606;270607;270608;270609;270610;270611;270612;270613	362930;362931;362932;362933;362934;362935;362936;362937;362938;362939;362940;362941;362942;362943;362944;362945;362946;362947	362930	660		18	
SDPIQEIR	0	Unmodified	956.49271	0.49270958	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	1	3	1	32.537	30.103	2	2.6573E-05	26429	160511_QHF_FH_JSI9i_1	138.54	90.696			0.90656	1.0446	12.011	5	1	Linear	1.105	0.91553	NaN	1	0	Median	0.7511	0.89	NaN	1	0	Median	1.1737	1.1424	3.4766	2	1	Median	0.99132	1.0446	NaN	1	0	Median	946360000	479700000	466670000	193950000	83523000	110430000	229570000	130510000	99063000	299640000	154390000	145250000	223200000	111280000	111920000	44640	4390	42014	270614;270615;270616;270617;270618;270619	362948;362949;362950;362951;362952;362953;362954;362955	362955			8	
SDPLLIGIPTSENPFK	1	Unmodified	1726.9142	0.91415169	5238	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.591	9	9	1							5	4	4	6	97.591	97.385	2;3	7.0056E-40	86315	160511_QHF_FH_JSI9i_1	198.32	191.43			1.036	1.0829	17.946	17	2	Median	0.99885	0.82574	6.9712	4	0	Median	0.7308	0.86345	7.5979	4	0	Median	1.1234	1.1177	3.4369	4	0	Median	1.0517	1.1578	7.9059	5	2	Median	2066800000	1041300000	1025500000	391900000	193670000	198230000	537540000	305720000	231820000	490640000	237630000	253020000	646750000	304340000	342420000	44641	5238	42015	270620;270621;270622;270623;270624;270625;270626;270627;270628;270629;270630;270631;270632;270633;270634;270635;270636;270637;270638	362956;362957;362958;362959;362960;362961;362962;362963;362964;362965;362966;362967;362968;362969;362970;362971;362972;362973;362974;362975;362976;362977;362978;362979;362980;362981;362982;362983;362984;362985;362986;362987;362988;362989;362990;362991;362992;362993;362994;362995;362996;362997;362998	362985			42	
SDPLVIENGCEEYGLICPMEEVVSIALYNDISHMK	1	Unmodified	4023.8614	0.86141248	3673	Q8NI08	NCOA7	Nuclear receptor coactivator 7	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	36.33	27.232	5	0.059765	14402	160513_QHF_FH_JSI12Kac_6	1.4041	0.89467			0.69438	0.7495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69438	0.7495	NaN	1	0	Median	5784200	3060600	2723600	0	0	0	0	0	0	0	0	0	5784200	3060600	2723600	44642	3673	42016	270639	362999	362999			1	
SDPNQHLTIIQDPEYR	0	Unmodified	1924.9279	0.92790427	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.449	49.053	3	0.0047789	41997	160511_QHF_FH_JSI12i_2	48.899	39.967			2.3277	2.4861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3277	2.4861	NaN	1	1	Median	17386000	3552300	13834000	0	0	0	0	0	0	0	0	0	17386000	3552300	13834000	44643	1435	42017	270640	363000	363000			1	
SDPNRETDDTLVLSFVGQTR	0	Unmodified	2249.0924	0.09240342	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	77.325	76.723	3	1.2396E-07	67383	160511_QHF_FH_JSI11i_2	98.816	83.726			1.0864	1.0783	10.225	6	2	Median	1.3697	1.1477	NaN	1	0	Median	0.81128	0.98649	NaN	1	1	Median	1.2422	1.1744	5.3509	2	1	Median	0.93005	0.97912	6.916	2	0	Median	387450000	182070000	205390000	62194000	24423000	37771000	51094000	25414000	25679000	120820000	54750000	66074000	153340000	77479000	75861000	44644	2734	42018	270641;270642;270643;270644;270645;270646	363001;363002;363003;363004;363005;363006;363007;363008;363009;363010;363011	363005			11	
SDPTSYAGYIEDLK	1	Unmodified	1557.7199	0.71986856	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	74.468	73.973	2;3	2.1437E-10	67153	160511_QHF_FH_JSI10i_1	113.61	95.713			0.94821	0.99443	72.949	8	1	Median	1.5078	1.2512	25.419	2	0	Median	0.81533	0.93249	2.0256	2	1	Median	0.32763	0.31997	113.64	2	0	Median	1.0898	1.1332	1.327	2	0	Median	707860000	387360000	320500000	203430000	100530000	102900000	182580000	103290000	79297000	101230000	83157000	18070000	220630000	100390000	120230000	44645	1829	42019	270647;270648;270649;270650;270651;270652;270653;270654;270655	363012;363013;363014;363015;363016;363017;363018;363019;363020	363017			9	
SDPTSYAGYIEDLKK	2	Unmodified	1685.8148	0.81483158	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	5	10								4	3	5	3	67.04	66.284	2;3	1.2091E-26	58380	160511_QHF_FH_JSI9i_2	144.57	126.26			0.81383	0.83934	18.095	10	3	Median	1.1359	0.80956	21.3	3	1	Plateau	0.74921	0.90492	9.3788	3	1	Plateau	0.79704	0.81541	19.391	3	1	Plateau	0.81759	0.82846	NaN	1	0	Median	1442800000	773360000	669410000	331400000	160470000	170930000	412260000	233290000	178970000	556180000	305220000	250960000	142930000	74372000	68554000	44646	1829	42020	270656;270657;270658;270659;270660;270661;270662;270663;270664;270665;270666;270667;270668;270669;270670	363021;363022;363023;363024;363025;363026;363027;363028;363029;363030;363031;363032;363033;363034	363029			13	
SDPVVSYR	0	Unmodified	921.4556	0.45559579	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	5.95	4	4	3			2	3	2		4	4	5	5	24.388	20.885	2	1.6692E-10	12670	160513_QHF_FH_JSI12Kac_4	149.4	110.58			0.95457	0.98934	7.4769	17	0	Median	1.2277	1.0231	4.9558	4	0	Median	0.78038	0.94949	6.173	4	0	Median	0.95567	0.95102	9.7859	5	0	Median	0.93347	1.0255	1.487	4	0	Median	11875000000	5742400000	6132400000	2857900000	1243600000	1614200000	2541300000	1381700000	1159500000	3130800000	1469900000	1660900000	3344800000	1647100000	1697800000	44647	1033	42021	270671;270672;270673;270674;270675;270676;270677;270678;270679;270680;270681;270682;270683;270684;270685;270686;270687;270688	363035;363036;363037;363038;363039;363040;363041;363042;363043;363044;363045;363046;363047;363048;363049;363050;363051;363052;363053;363054;363055;363056;363057;363058;363059;363060;363061;363062;363063;363064;363065;363066;363067;363068;363069;363070	363067			36	
SDPVVSYRETVSEESNVLCLSK	1	Unmodified	2497.2006	0.20063324	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	3	1	72.939	72.516	3	3.7246E-10	64669	160511_QHF_FH_JSI11i_3	109.85	102.58			0.96369	1.0363	17.045	4	0	Median	NaN	NaN	NaN	0	0	Median	0.97356	1.1877	NaN	1	0	Median	0.90409	0.90009	0.63114	2	0	Median	1.228	1.2285	NaN	1	0	Median	459460000	227400000	232050000	0	0	0	127620000	66700000	60915000	209640000	104000000	105640000	122210000	56708000	65498000	44648	1033	42022	270689;270690;270691;270692;270693	363071;363072;363073;363074;363075;363076;363077;363078;363079	363072			9	
SDPYALVR	0	Unmodified	919.47633	0.47633123	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	5.63	1						3				1	2	1	43.87	36.124	2	0.0040128	32112	160511_QHF_FH_JSI11i_1	69.998	9.2106			1.1218	1.1378	13.187	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1958	1.4109	NaN	1	0	Median	1.1218	1.1082	8.6053	2	0	Median	1.0075	1.0993	NaN	1	0	Median	219770000	109330000	110440000	0	0	0	3789100	2035800	1753400	214120000	106500000	107620000	1860400	799220	1061100	44649	4399	42023	270694;270695;270696;270697	363080;363081;363082	363080			3	
SDPYGIIR	0	Unmodified	919.47633	0.47633123	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.5	6.02	3	1					2			1	1	1	3	40.092	36.106	2	0.0030963	33160	160511_QHF_FH_JSI12i_2	81.635	11.367			1.2131	1.1162	16.549	6	1	Median	1.2693	1.058	NaN	1	0	Median	0.87367	1.042	NaN	1	0	Median	1.1814	1.1777	NaN	1	0	Median	1.2458	1.3532	23.835	3	1	Median	614460000	296920000	317540000	117940000	53369000	64576000	183930000	99597000	84331000	8318700	3954400	4364300	304270000	140000000	164270000	44650	6	42024	270698;270699;270700;270701;270702;270703	363083;363084;363085;363086;363087	363083			5	
SDPYLEFHK	1	Unmodified	1134.5346	0.53457439	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.81	2	8	1					4		3	4	4	4	40.185	36.684	2;3	4.7075E-07	31240	160511_QHF_FH_JSI12i_2	116.3	108.42			0.91326	0.92777	11.119	14	0	Median	1.1069	0.92865	9.634	3	0	Median	0.7597	0.88128	8.9148	4	0	Median	1.1384	1.1362	15.345	3	0	Plateau	0.91326	1.0206	11.782	4	0	Median	1435100000	745980000	689110000	251490000	120340000	131150000	341580000	185800000	155780000	389560000	178060000	211500000	452450000	261770000	190680000	44651	479	42025	270704;270705;270706;270707;270708;270709;270710;270711;270712;270713;270714;270715;270716;270717;270718	363088;363089;363090;363091;363092;363093;363094;363095;363096;363097;363098;363099;363100;363101;363102;363103;363104;363105;363106;363107;363108;363109	363091			19	
SDPYSTGHLR	0	Unmodified	1131.5309	0.530886	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	15.006	14.371	2	0.0027567	11344	160511_QHF_FH_JSI11i_2	57.96	48.746			0.6658	0.74977	13.743	3	0	Plateau	0.6658	0.57816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72613	0.74977	NaN	1	0	Median	0.55775	0.60935	NaN	1	0	Median	52334000	32111000	20223000	14974000	10230000	4743800	0	0	0	21422000	11355000	10067000	15938000	10526000	5412700	44652	457	42026	270719;270720;270721	363110;363111;363112;363113	363112			4	
SDPYVKLK	2	Acetyl (K)	990.5386	0.53859714	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		46.448	36.082	2	0.022782	21465	160513_QHF_FH_JSI11Kac_4	60.682	39.154			0.47025	0.45815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47025	0.45815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5766200	4002200	1764000	0	0	0	0	0	0	5766200	4002200	1764000	0	0	0	44653	4399	42027	270722	363114	363114	3151		1	
SDQDHSMDEMTAVVK	1	Acetyl (Protein N-term)	1733.7237	0.72365008	889	P08047	SP1	Transcription factor Sp1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.209	52.542	2	2.5902E-66	47772	160511_QHF_FH_JSI12i_1	131.37	124.71			1.145	1.0776	7.042	4	0	Median	1.2245	1.0179	NaN	1	0	Median	0.83895	1.0027	NaN	1	0	Median	1.1772	1.1408	NaN	1	0	Median	1.1137	1.1408	NaN	1	0	Median	585210000	288980000	296230000	118820000	59555000	59268000	130170000	73263000	56910000	162320000	69186000	93134000	173900000	86979000	86917000	44654	889	42028	270723;270724;270725;270726	363115;363116;363117;363118;363119;363120;363121;363122	363118			8	
SDQDHSMDEMTAVVK	1	Acetyl (Protein N-term);Oxidation (M)	1749.7186	0.7185647	889	P08047	SP1	Transcription factor Sp1	yes	yes	0	1	1	0		By MS/MS			1	0	1										1			37.418	37.047	2	0.019491	33171	160511_QHF_FH_JSI10i_1	33.409	27.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44655	889	42028	270727	363123	363123		452	1	
SDQDYILK	1	Unmodified	980.48148	0.48147619	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	35.975	31.813	2	4.9358E-05	28425	160511_QHF_FH_JSI10i_1	135.83	105.65			1.0655	1.1083	13.464	7	0	Median	1.5927	1.3359	NaN	1	0	Median	0.92676	1.1077	8.0981	2	0	Median	1.0975	1.0817	3.4289	2	0	Median	1.1824	1.2812	22.135	2	0	Median	8045100000	3949300000	4095800000	1964700000	899380000	1065300000	2218700000	1133000000	1085800000	1924300000	947080000	977220000	1937400000	969890000	967460000	44656	5475	42029	270728;270729;270730;270731;270732;270733;270734	363124;363125;363126;363127;363128;363129;363130;363131;363132;363133;363134;363135;363136;363137	363130			14	
SDQEAKPSTEDLGDK	2	Acetyl (Protein N-term)	1660.7428	0.74278885	2053	P63165	SUMO1	Small ubiquitin-related modifier 1	yes	yes	0	1	0	1		By MS/MS	By MS/MS		1	0	3										2	1		25.047	24.753	2	2.7351E-17	21895	160511_QHF_FH_JSI10i_1	127.02	111.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20732000	0	20732000	0	0	0	20732000	0	20732000	0	0	0	0	0	0	44657	2053	42030	270735;270736;270737	363138;363139;363140	363140			3	
SDQEAKPSTEDLGDKK	3	Acetyl (Protein N-term)	1788.8378	0.83775186	2053	P63165	SUMO1	Small ubiquitin-related modifier 1	yes	yes	0	1	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				1	3	3	2	22.422	20.088	2;3	1.9035E-05	17324	160511_QHF_FH_JSI12i_1	100.39	80.7			3.1544	2.8452	202.15	2	1	Median	0.86071	0.68127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11.56	11.882	NaN	1	1	Median	195600000	69122000	126470000	26120000	12472000	13647000	14576000	14576000	0	36194000	18318000	17876000	118710000	23756000	94951000	44658	2053	42031	270738;270739;270740;270741;270742;270743;270744;270745;270746	363141;363142;363143;363144;363145;363146;363147;363148;363149;363150;363151;363152	363144			12	
SDQNLQTALELTR	0	Unmodified	1487.758	0.7579854	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	60.751	59.97	2	8.3794E-53	54487	160511_QHF_FH_JSI11i_1	256.31	219.97			0.87774	0.89414	16.121	8	3	Median	1.0013	0.83767	8.7571	2	1	Median	0.86609	1.0417	21.131	2	1	Median	0.81605	0.80531	17.829	2	1	Median	0.77323	0.83564	12.33	2	0	Median	1209400000	647040000	562370000	202640000	95971000	106670000	333860000	190570000	143290000	384790000	206850000	177930000	288130000	153650000	134470000	44659	686	42032	270747;270748;270749;270750;270751;270752;270753;270754	363153;363154;363155;363156;363157;363158;363159;363160;363161;363162;363163;363164	363154			12	
SDQNLQTALELTRR	0	Unmodified	1643.8591	0.85909643	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							1	3			53.99	52.719	3	2.9473E-05	46548	160511_QHF_FH_JSI10i_2	102.63	77.695			1.0788	1.0916	10.56	4	3	Median	1.2141	1.0511	NaN	1	1	Median	0.98572	1.1188	11.335	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	901810000	435960000	465840000	285740000	112580000	173160000	616070000	323390000	292680000	0	0	0	0	0	0	44660	686	42033	270755;270756;270757;270758	363165;363166;363167;363168	363168			4	
SDQQGEALDSSQK	1	Unmodified	1391.6165	0.61646612	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	10.773	9.0214	2	8.8562E-41	7760	160511_QHF_FH_JSI12i_1	200.93	180.06			1.0581	1.0624	9.1714	5	0	Median	1.0921	0.90645	NaN	1	0	Median	0.91432	1.0624	NaN	1	0	Median	1.122	1.0704	10.606	2	0	Median	1.033	1.0808	NaN	1	0	Median	600860000	317110000	283750000	142020000	73086000	68939000	154190000	90882000	63313000	167600000	85318000	82284000	137040000	67825000	69215000	44661	2804	42034	270759;270760;270761;270762;270763	363169;363170;363171;363172;363173;363174;363175;363176;363177	363173			9	
SDQQGEALDSSQKK	2	Unmodified	1519.7114	0.71142914	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1	0	5									1	1	1	2	8.1904	7.841	2;3	0.012163	5737	160511_QHF_FH_JSI12i_1	51.135	25.196			1.1325	1.1251	11.356	4	0	Median	1.4659	1.2007	NaN	1	0	Median	0.90241	1.0542	NaN	1	0	Median	1.0322	0.9931	NaN	1	0	Median	1.2426	1.2699	NaN	1	0	Median	321550000	155410000	166140000	74773000	35334000	39439000	87656000	43965000	43692000	73279000	34179000	39099000	85840000	41928000	43913000	44662	2804	42035	270764;270765;270766;270767;270768	363178;363179	363179			1	
SDQSYVISFVVPNQK	1	Unmodified	1709.8625	0.86245047	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	77.965	77.5	2;3	2.3942E-06	70246	160511_QHF_FH_JSI10i_1	123.84	107.95			0.7335	0.69164	31.931	7	5	Median	0.76163	0.64168	46.871	2	1	Median	0.5124	0.60156	14.695	2	2	Median	0.78237	0.74389	10.299	2	2	Median	1.148	1.2066	NaN	1	0	Median	225410000	122990000	102420000	51239000	28469000	22771000	75753000	40931000	34822000	60531000	36587000	23944000	37887000	17003000	20883000	44663	418	42036	270769;270770;270771;270772;270773;270774;270775;270776	363180;363181;363182;363183;363184;363185;363186;363187;363188	363184			9	
SDQTNILSALLVLLQDSLLATASSPK	1	Unmodified	2697.48	0.48002621	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.96	100.24	3	1.9618E-13	59419	160513_QHF_FH_JSI10Kac_6	98.967	79.923			0.71086	0.83509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71086	0.83509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118720000	63752000	54966000	0	0	0	118720000	63752000	54966000	0	0	0	0	0	0	44664	2485	42037	270777	363189;363190	363189			2	
SDQVITAINGIK	1	Unmodified	1257.6929	0.69286595	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			67.036	56.349	2	0.019452	30482	160513_QHF_FH_JSI10Kac_4	50.284	25.429			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44665	3709	42038	270778	363191	363191			1	
SDQWKPLNLEEK	2	Unmodified	1485.7464	0.74635808	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1								2	2	2	48.161	47.433	2;3	0.0031148	40355	160511_QHF_FH_JSI12i_3	68.515	51.844			0.89712	0.9828	38.423	5	3	Median	NaN	NaN	NaN	0	0	Median	0.46087	0.58861	NaN	1	1	Median	1.0271	1.0341	26.993	2	2	Median	1.199	1.2628	35.449	2	0	Median	204620000	104050000	100570000	0	0	0	13502000	9130500	4371800	134430000	64323000	70109000	56686000	30594000	26091000	44666	2217	42039	270779;270780;270781;270782;270783;270784	363192;363193;363194;363195;363196;363197;363198	363198			7	
SDRPELTGAK	1	Unmodified	1072.5513	0.55128709	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6		4	4				1	4		2	3	3	5	12.827	9.0408	2;3	1.23E-08	8324	160511_QHF_FH_JSI11i_3	135.86	101.47			0.92969	1.0016	12.738	13	2	Median	0.99216	0.8412	4.0325	2	0	Median	0.84793	1.0016	2.1148	3	0	Median	1.0998	1.0723	3.4279	3	0	Plateau	0.90688	0.94671	17.31	5	2	Median	3947600000	2194200000	1753300000	156600000	70935000	85660000	236120000	130500000	105620000	414440000	205410000	209040000	3140400000	1787400000	1353000000	44667	1041	42040	270785;270786;270787;270788;270789;270790;270791;270792;270793;270794;270795;270796;270797	363199;363200;363201;363202;363203;363204;363205;363206;363207;363208;363209;363210;363211;363212;363213	363199			15	
SDSDTEGLLFSR	0	Unmodified	1325.6099	0.60992418	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	54.138	53.607	2	0.00069113	48709	160511_QHF_FH_JSI12i_1	68.536	47.537			0.9781	1.0618	25.59	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75673	0.88602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2642	1.2724	NaN	1	0	Median	70501000	28708000	41793000	0	0	0	42204000	14513000	27692000	0	0	0	28297000	14196000	14101000	44668	4719	42041	270798;270799	363214;363215;363216	363215			3	
SDSEDICLFTK	1	Unmodified	1313.5809	0.58093224	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.122	55.585	2	1.4161E-05	50275	160511_QHF_FH_JSI11i_1	106.4	79.511			1.7671	1.7463	22.617	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5767	1.4882	NaN	1	1	Median	1.9804	2.0492	NaN	1	1	Median	112840000	38583000	74253000	0	0	0	0	0	0	64770000	21457000	43314000	48066000	17126000	30940000	44669	596	42042	270800;270801;270802	363217;363218;363219	363217			3	
SDSFAPK	1	Unmodified	750.35482	0.35481911	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	13.424	10.758	2	0.0080209	9356	160511_QHF_FH_JSI10i_1	85.265	34.299			0.88746	0.95551	48.792	6	0	Median	1.2725	1.0395	NaN	1	0	Median	0.82865	0.97923	NaN	1	0	Median	0.54364	0.53216	79.307	2	0	Median	0.71714	0.75824	38.576	2	0	Median	2173000000	1172700000	1000300000	443810000	203630000	240180000	549180000	303350000	245830000	575820000	324430000	251390000	604160000	341290000	262870000	44670	5542	42043	270803;270804;270805;270806;270807;270808	363220;363221;363222;363223;363224;363225	363224			6	
SDSFENPVLQQHFR	0	Unmodified	1702.8063	0.80633258	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.61		9	5					5	7	5	5	8	8	59.654	54.458	2;3	1.8716E-226	47090	160511_QHF_FH_JSI11i_2	346.19	322.82			0.98349	1.0645	9.7149	25	5	Median	1.3197	1.1143	4.4193	5	0	Median	0.89017	1.0696	6.5246	4	0	Median	0.9711	0.982	10.1	8	2	Median	0.92708	1.0305	10.681	8	3	Median	8921300000	4341000000	4580300000	1294400000	556730000	737650000	1428200000	776620000	651580000	3247900000	1538100000	1709900000	2950800000	1469600000	1481200000	44671	1023	42044	270809;270810;270811;270812;270813;270814;270815;270816;270817;270818;270819;270820;270821;270822;270823;270824;270825;270826;270827;270828;270829;270830;270831;270832;270833;270834	363226;363227;363228;363229;363230;363231;363232;363233;363234;363235;363236;363237;363238;363239;363240;363241;363242;363243;363244;363245;363246;363247;363248;363249;363250;363251;363252;363253;363254;363255;363256;363257;363258;363259;363260;363261;363262;363263;363264;363265;363266;363267;363268;363269;363270;363271;363272	363250			47	
SDSGEQNYGER	0	Acetyl (Protein N-term)	1282.5062	0.50618739	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	1	0	0			By MS/MS	By MS/MS	11	0				2								1	1	15.827	8.3863	2	1.1336E-07	4818	160513_QHF_FH_JSI12Kacf_1	111.65	111.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44672	2044	42045	270835;270836	363273;363274	363273			2	
SDSGEQNYGERESR	0	Acetyl (Protein N-term)	1654.6819	0.68191992	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.887	10.504	2	2.7171E-06	8337	160511_QHF_FH_JSI12i_1	125.97	108.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44673	2044	42046	270837;270838;270839;270840	363275;363276;363277;363278	363276			4	
SDSGKPYYYNSQTK	2	Acetyl (K)	1678.7475	0.74748029	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	0.64					4	5	1			1	3	3	3	37.16	27.249	2;3	3.1934E-24	5981	160513_QHF_FH_JSI9Kac_3	159.08	126.59			0.84273	0.94878	17.3	9	0	Median	0.84273	0.68415	NaN	1	0	Median	0.76873	0.94878	2.8308	3	0	Plateau	0.93074	0.90827	14.345	2	0	Median	1.0323	1.1317	23.734	3	0	Median	173710000	88277000	85435000	40935000	21260000	19675000	36584000	21501000	15083000	49794000	23371000	26424000	46399000	22146000	24253000	44674	521	42047	270841;270842;270843;270844;270845;270846;270847;270848;270849;270850	363279;363280;363281;363282;363283;363284;363285;363286;363287;363288;363289;363290;363291	363282	270		13	
SDSHDIPR	0	Unmodified	925.42536	0.42535829	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	7.687	7.264	2	0.0042745	5025	160511_QHF_FH_JSI12i_2	69.198	52.234			0.96004	1.0055	7.1986	4	0	Median	1.1442	0.99702	NaN	1	0	Median	0.89865	1.1028	NaN	1	0	Median	1.0256	1.0141	NaN	1	0	Median	0.84947	0.92536	NaN	1	0	Median	168040000	77513000	90524000	42266000	15947000	26319000	39814000	18604000	21210000	47970000	23168000	24802000	37986000	19795000	18192000	44675	3215	42048	270851;270852;270853;270854	363292;363293	363292			2	
SDSHPSDALTR	0	Unmodified	1184.5422	0.54217896	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	5.27	5	8					4			2	4	5	6	10.93	8.5987	2;3	5.5732E-23	7101	160511_QHF_FH_JSI12i_2	170.47	144.73			1.0548	1.0687	6.3437	16	1	Median	1.3469	1.1484	1.0756	2	0	Median	0.84914	1.0306	10.057	4	0	Median	1.068	1.0858	5.3995	5	0	Median	0.96497	1.0278	3.6084	5	1	Median	1909300000	967460000	941850000	341630000	151690000	189940000	443670000	247090000	196580000	718040000	359280000	358760000	405970000	209400000	196570000	44676	1675	42049	270855;270856;270857;270858;270859;270860;270861;270862;270863;270864;270865;270866;270867;270868;270869;270870;270871	363294;363295;363296;363297;363298;363299;363300;363301;363302;363303;363304;363305;363306;363307;363308;363309;363310;363311;363312;363313;363314;363315;363316	363296			23	
SDSNLGGHSIR	0	Unmodified	1141.5476	0.54759869	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	10.542	10.589	2	0.014743	7910	160511_QHF_FH_JSI12i_3	42.976	26.436			0.91075	0.90156	23.379	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1302	1.0636	NaN	1	0	Median	0.73392	0.76419	NaN	1	0	Median	69478000	32510000	36968000	0	0	0	0	0	0	31127000	14704000	16424000	38350000	17806000	20544000	44677	2584	42050	270872;270873	363317	363317			1	
SDSPAIQLR	0	Unmodified	985.51926	0.51925868	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		29.98	29.703	2	0.0039436	26480	160511_QHF_FH_JSI10i_1	58.119	28.97			0.79716	0.844	10.693	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78674	0.91029	NaN	1	0	Median	0.80771	0.78254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	178470000	89760000	88710000	0	0	0	99705000	48393000	51312000	78764000	41367000	37397000	0	0	0	44678	4247	42051	270874;270875	363318;363319	363319			2	
SDSPTGDVLLDETLK	1	Unmodified	1588.7832	0.7831971	4716	Q9H4A5	GOLPH3L	Golgi phosphoprotein 3-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	69.593	68.943	2	1.5124E-11	62738	160511_QHF_FH_JSI11i_1	107.53	90.952			0.81264	0.68181	23.776	3	1	Median	0.81264	0.68181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62991	0.60052	NaN	1	0	Median	0.89795	0.95159	NaN	1	0	Median	129700000	64463000	65241000	37997000	20832000	17164000	0	0	0	48903000	22381000	26522000	42805000	21249000	21555000	44679	4716	42052	270876;270877;270878;270879;270880;270881	363320;363321;363322;363323;363324;363325;363326	363321			7	
SDSPVPTAPTSGGPK	1	Unmodified	1396.6834	0.68342347	3316	Q86U44	METTL3	N6-adenosine-methyltransferase 70 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	29.039	28.312	2	0.00015382	25118	160511_QHF_FH_JSI10i_1	94.191	68.755			1.0715	1.1099	24.525	5	2	Median	1.2015	0.97661	36.472	2	1	Median	0.94731	1.1099	NaN	1	0	Median	1.5537	1.4586	NaN	1	1	Median	1.0715	1.0939	NaN	1	0	Median	119660000	54598000	65066000	34900000	14764000	20135000	28792000	16171000	12621000	24145000	8681300	15464000	31827000	14981000	16846000	44680	3316	42053	270882;270883;270884;270885;270886;270887	363327;363328;363329;363330;363331;363332;363333;363334;363335	363332			9	
SDSVSASER	0	Unmodified	936.41485	0.41485319	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0				By MS/MS	7	6	1					1							2	5.7315	5.3854	2	0.00042465	3406	160511_QHF_FH_JSI12i_1	90.709	49.207			1.2512	1.3367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2512	1.3367	NaN	1	1	Median	92702000	38895000	53807000	0	0	0	0	0	0	0	0	0	92702000	38895000	53807000	44681	366	42054	270888;270889	363336;363337	363336			2	
SDSWSLANLSSTK	1	Unmodified	1394.6678	0.66777341	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.25	0.433	3	1										2	2	61.936	61.392	2	5.435E-07	55579	160511_QHF_FH_JSI11i_1	93.839	81.312			1.4719	1.4809	38.318	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1928	1.1294	NaN	1	1	Median	1.8163	1.9418	NaN	1	1	Median	110310000	51850000	58458000	0	0	0	0	0	0	65927000	34224000	31703000	44381000	17626000	26754000	44682	5222	42055	270890;270891;270892;270893	363338;363339;363340;363341	363339			4	
SDSYGGR	0	Unmodified	740.30893	0.30893155	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	0.1734	-0.18604	2	0.013061	36	160511_QHF_FH_JSI10i_1	68.398	55.967			0.79588	0.91235	13.306	3	0	Plateau	0.88247	0.72111	NaN	1	0	Median	0.79588	0.93828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75684	0.79529	NaN	1	0	Median	111150000	66282000	44871000	26943000	15489000	11454000	46312000	28062000	18250000	0	0	0	37897000	22730000	15167000	44683	2297	42056	270894;270895;270896	363342;363343	363342			2	
SDSYMGLDQIK	1	Unmodified	1255.5755	0.57545293	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.808	52.14	2	1.195E-23	47422	160511_QHF_FH_JSI12i_1	180.67	150.1			1.1219	1.0585	6.5179	4	1	Median	1.2088	0.99012	NaN	1	1	Median	0.88682	1.0384	NaN	1	0	Median	1.2009	1.1553	NaN	1	0	Median	1.0482	1.079	NaN	1	0	Median	615670000	298020000	317650000	138200000	69914000	68286000	157070000	86444000	70623000	148330000	62179000	86152000	172080000	79486000	92589000	44684	5285	42057	270897;270898;270899;270900;270901	363344;363345;363346;363347;363348;363349;363350;363351	363347			8	
SDSYVELSQYR	0	Unmodified	1345.615	0.61500956	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	45.712	45.06	2	9.8338E-05	40922	160511_QHF_FH_JSI12i_1	93.448	82.925			0.97271	0.99027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97271	0.99027	NaN	1	1	Median	176240000	90182000	86060000	0	0	0	0	0	0	0	0	0	176240000	90182000	86060000	44685	1768	42058	270902;270903	363352;363353	363353			2	
SDTAAAAVR	0	Unmodified	860.43519	0.4351947	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.9147	7.5654	2	2.5767E-07	5431	160511_QHF_FH_JSI12i_1	140.09	109.9			0.95742	0.97033	4.4992	4	0	Median	1.0943	0.90953	NaN	1	0	Median	0.82866	0.98575	NaN	1	0	Median	0.97409	0.95515	NaN	1	0	Median	0.94103	1.0093	NaN	1	0	Median	7097100000	3498000000	3599100000	1636800000	736540000	900300000	1797900000	968270000	829620000	1834900000	854140000	980790000	1827400000	939080000	888370000	44686	1208	42059	270904;270905;270906;270907	363354;363355;363356;363357	363355			4	
SDTALEEAVAEVLDHRPIEPK	1	Unmodified	2318.1754	0.17540477	3310	Q86TP1	PRUNE	Protein prune homolog	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	100.79	100.73	4	5.0712E-13	89756	160511_QHF_FH_JSI11i_3	115.46	106.75			0.81581	0.87749	19.696	5	0	Median	1.1851	1.0348	NaN	1	0	Median	0.72041	0.87749	NaN	1	0	Median	0.95305	0.93336	12.995	2	0	Median	0.65081	0.63589	NaN	1	0	Median	259460000	123700000	135760000	18973000	7526900	11446000	35745000	20118000	15627000	160980000	71811000	89164000	43765000	24246000	19519000	44687	3310	42060	270908;270909;270910;270911;270912	363358;363359	363358			2	
SDTAVADTR	0	Acetyl (Protein N-term)	976.44615	0.44615331	5430	Q9UMY4	SNX12	Sorting nexin-12	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				16.84	15.778	2	0.0034589	13025	160511_QHF_FH_JSI9i_1	57.59	28.441			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44688	5430	42061	270913	363360	363360			1	
SDTAVADTRR	0	Acetyl (Protein N-term)	1132.5473	0.54726434	5430	Q9UMY4	SNX12	Sorting nexin-12	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	13.173	11.437	2	2.2366E-06	9595	160511_QHF_FH_JSI10i_1	159.28	117.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44689	5430	42062	270914;270915;270916;270917;270918	363361;363362;363363;363364;363365	363363			5	
SDTGKPYYYNNQSK	2	Acetyl (K)	1705.7584	0.75837933	3078	Q6NWY9	PRPF40B	Pre-mRNA-processing factor 40 homolog B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	38.763	29.977	2	0.0025769	16960	160513_QHF_FH_JSI12Kac_3	70.977	59.764			0.90108	1.0178	11.541	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77804	0.90103	10.232	2	0	Median	1.1119	1.0701	NaN	1	0	Median	0.99356	1.0696	NaN	1	0	Median	14494000	6885300	7608500	0	0	0	4618600	2721000	1897600	4352200	2068700	2283500	5522900	2095600	3427400	44690	3078	42063	270919;270920;270921;270922;270923	363366;363367;363368;363369;363370;363371;363372	363369	2764		7	
SDTITFK	1	Unmodified	810.41233	0.41233399	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		26.55	25.971	2	0.010964	22940	160511_QHF_FH_JSI10i_1	79.116	54.118			0.97429	0.94536	40.192	3	3	Median	1.4963	1.2331	NaN	1	1	Median	0.48359	0.55971	NaN	1	1	Median	0.97429	0.94536	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	306700000	201400000	105300000	58124000	23332000	34792000	167660000	132900000	34765000	80910000	45171000	35739000	0	0	0	44691	1240	42064	270924;270925;270926	363373;363374;363375	363374			3	
SDTLTADVIGR	0	Acetyl (Protein N-term)	1188.5986	0.59863121	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		65.258	64.815	2	0.00035869	58927	160511_QHF_FH_JSI11i_1	70.552	63.358			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44692	2712	42065	270927	363376	363376			1	
SDTNMEQVPATNDTIK	1	Unmodified	1762.8043	0.80434324	322	O43318	MAP3K7	Mitogen-activated protein kinase kinase kinase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		39.848	38.636	2	0.00039473	34593	160511_QHF_FH_JSI10i_1	70.089	60.901			0.654	0.53509	NaN	1	1	Median	0.654	0.53509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15721000	11371000	4349100	15721000	11371000	4349100	0	0	0	0	0	0	0	0	0	44693	322	42066	270928;270929;270930	363377;363378;363379	363378			3	
SDTPLIYK	1	Unmodified	935.4964	0.49639797	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.09	5					3	1			1	1	4	3	39.33	34.334	2	6.5968E-05	30420	160511_QHF_FH_JSI11i_1	114.6	87.077			1.0654	1.0641	9.3745	8	3	Median	1.1728	0.96522	NaN	1	0	Median	0.86362	1.0283	NaN	1	0	Median	1.0242	1.101	6.2187	3	1	Plateau	1.0426	1.1051	15.214	3	2	Median	2384500000	1164300000	1220200000	465300000	211680000	253620000	2508600	1368300	1140300	674030000	319550000	354480000	1242700000	631680000	610990000	44694	1520	42067	270931;270932;270933;270934;270935;270936;270937;270938;270939	363380;363381;363382;363383;363384;363385;363386;363387;363388;363389	363381			10	
SDTQLVVR	0	Unmodified	916.49779	0.49779495	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7.5	6.5	1						1			1		1		25.42	20.611	2	0.002221	17597	160511_QHF_FH_JSI9i_1	90.657	48.26			0.74621	0.68046	37.463	2	1	Median	0.62962	0.52211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88439	0.88685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171840000	114810000	57028000	166740000	111780000	54953000	0	0	0	5101500	3026900	2074600	0	0	0	44695	3860	42068	270940;270941	363390;363391	363391			2	
SDTSFMFQR	0	Unmodified	1117.4862	0.48624399	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.78	4	4	2				2	2		3	5	4	2	48.566	44.803	2	1.6895E-23	38420	160511_QHF_FH_JSI12i_2	194.44	171.95			0.99794	1.0095	30.367	14	1	Median	1.2827	1.0839	5.8045	3	0	Plateau	0.80366	0.933	52.18	5	1	Median	1.0465	1.0446	10.617	4	0	Median	0.96221	1.0354	5.1667	2	0	Median	1253500000	656170000	597320000	217780000	101860000	115920000	373220000	215370000	157850000	378320000	184950000	193370000	284180000	154000000	130180000	44696	932	42069	270942;270943;270944;270945;270946;270947;270948;270949;270950;270951;270952;270953;270954;270955	363392;363393;363394;363395;363396;363397;363398;363399;363400;363401;363402;363403;363404;363405;363406;363407;363408;363409	363394			18	
SDTSGDYEITLLK	1	Unmodified	1440.6984	0.69840484	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7	6	1					1					1		1	68.947	64.362	2	0.027071	58175	160511_QHF_FH_JSI12i_1	48.513	36.3			0.72801	0.81029	9.9235	2	2	Median	NaN	NaN	NaN	0	0	Median	0.75071	0.86919	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70599	0.75538	NaN	1	1	Median	274750000	158620000	116130000	0	0	0	1592200	1080800	511360	0	0	0	273160000	157540000	115620000	44697	1018	42070	270956;270957	363410;363411	363410			2	
SDTSGHFER	0	Unmodified	1034.4417	0.44173664	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.23	4.61		8	3					2		2	2	4	5	6.4024	4.7165	2;3	1.5373E-08	3731	160511_QHF_FH_JSI11i_2	151.97	126.24			0.92593	1.0424	8.5956	13	0	Median	1.2745	1.0861	1.2016	2	0	Median	0.86603	1.0497	7.5727	2	0	Median	0.95217	0.93205	8.4478	4	0	Median	0.92593	1.0424	8.9168	5	0	Median	1937500000	949270000	988220000	357820000	148280000	209540000	388580000	195850000	192730000	590610000	302520000	288080000	600480000	302610000	297860000	44698	1170	42071	270958;270959;270960;270961;270962;270963;270964;270965;270966;270967;270968;270969;270970	363412;363413;363414;363415;363416;363417;363418;363419;363420;363421;363422;363423	363417			11	
SDTSGHFQR	0	Unmodified	1033.4577	0.45772105	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	2	3	4	5.7649	5.5008	2;3	1.1105E-118	3391	160511_QHF_FH_JSI11i_3	289.58	263.35			0.89018	0.94166	10.919	10	0	Median	1.2974	1.1067	NaN	1	0	Median	0.67017	0.81692	14.483	2	0	Median	0.93172	0.94789	8.5397	3	0	Median	0.88219	0.94166	4.9583	4	0	Median	2618000000	1386000000	1232000000	156230000	74201000	82029000	428890000	256940000	171950000	842410000	406240000	436170000	1190500000	648650000	541810000	44699	1723	42072	270971;270972;270973;270974;270975;270976;270977;270978;270979;270980	363424;363425;363426;363427;363428;363429;363430;363431;363432;363433;363434;363435;363436	363424			13	
SDTSSPEVR	0	Unmodified	976.44615	0.44615331	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.5248	7.2876	2	0.0089698	5132	160511_QHF_FH_JSI10i_1	52.255	14.697			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44700	5474	42073	270981	363437	363437			1	
SDTTHLVTLGGVLR	0	Unmodified	1467.8045	0.80454166	5221	Q9P2N7	KLHL13	Kelch-like protein 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.318	61.796	3	0.023771	53766	160511_QHF_FH_JSI11i_2	23.831	15.921			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44701	5221	42074	270982	363438	363438			1	
SDVAILYNDR	0	Unmodified	1164.5775	0.57750184	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.217	43.572	2	0.0022808	39616	160511_QHF_FH_JSI12i_1	73.985	42.911			0.19666	0.20663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19666	0.20663	NaN	1	1	Median	21461000	16427000	5034300	0	0	0	0	0	0	0	0	0	21461000	16427000	5034300	44702	1832	42075	270983	363439	363439			1	
SDVASVNWSAPSQAFPR	0	Unmodified	1817.8697	0.86966111	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	2	3	69.37	68.736	2	5.0126E-24	61090	160511_QHF_FH_JSI9i_1	139.86	119.07			0.8759	1.0295	14.461	5	2	Median	NaN	NaN	NaN	0	0	Median	0.8759	1.0295	NaN	1	0	Median	0.86202	0.8442	5.2973	2	1	Median	1.0518	1.115	2.542	2	1	Median	201120000	100590000	100530000	0	0	0	58342000	33658000	24684000	84886000	43752000	41134000	57889000	23177000	34712000	44703	4424	42076	270984;270985;270986;270987;270988;270989;270990	363440;363441;363442;363443;363444;363445;363446;363447;363448	363447			9	
SDVCTPGGTTIYGLHALEQGGLR	0	Unmodified	2401.1696	0.16960788	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			76.36	75.619	3	0.00020605	67269	160511_QHF_FH_JSI10i_2	45.135	37.683			1.0511	1.2909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0511	1.2909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45755000	21670000	24085000	0	0	0	45755000	21670000	24085000	0	0	0	0	0	0	44704	2859	42077	270991	363449	363449			1	
SDVDLYQVR	0	Unmodified	1093.5404	0.54038805	111	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.617	38.99	2	5.5022E-06	35065	160511_QHF_FH_JSI11i_1	115.49	86.333			1.1096	1.2191	29.636	4	0	Median	0.84514	0.69234	NaN	1	0	Median	1.0176	1.2	NaN	1	0	Median	1.3402	1.3055	NaN	1	0	Median	1.2101	1.2386	NaN	1	0	Median	797740000	352000000	445730000	92310000	51853000	40457000	256760000	121770000	134990000	261790000	99369000	162420000	186880000	79015000	107860000	44705	111	42078	270992;270993;270994;270995	363450;363451;363452;363453;363454;363455;363456	363450			7	
SDVEAIAK	1	Unmodified	831.4338	0.43379771	4356	Q9BQA9	C17orf62	Uncharacterized protein C17orf62	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	17.782	17.487	2	0.0099662	14830	160511_QHF_FH_JSI11i_1	55.531	16.724			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44706	4356	42079	270996;270997	363457;363458	363457			2	
SDVEAIFSK	1	Unmodified	994.49713	0.49712625	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.44	4	4				1	2			2	3	3	3	53.489	50.054	2	6.2368E-08	45696	160511_QHF_FH_JSI12i_1	141.48	111.3			0.92092	0.94273	32.865	11	2	Median	1.1195	0.92851	3.0534	2	0	Median	0.87503	1.0282	53.941	3	0	Median	0.92838	0.90423	6.5665	3	1	Median	0.80355	0.86371	21.321	3	1	Median	1823200000	921070000	902110000	391330000	175850000	215480000	485710000	248200000	237520000	479210000	253230000	225980000	466930000	243790000	223140000	44707	882	42080	270998;270999;271000;271001;271002;271003;271004;271005;271006;271007;271008	363459;363460;363461;363462;363463;363464;363465;363466;363467;363468;363469;363470;363471;363472;363473;363474;363475;363476;363477;363478;363479;363480;363481	363467			23	
SDVEENNFEGR	0	Acetyl (Protein N-term)	1336.5531	0.55313758	2447	Q13595	TRA2A	Transformer-2 protein homolog alpha	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	33.042	32.466	2	4.9639E-07	29229	160511_QHF_FH_JSI12i_1	125.97	125.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44708	2447	42081	271009	363482;363483	363483			2	
SDVEINYSLIEIK	1	Unmodified	1521.7926	0.79263957	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.847	82.38	2	5.8187E-06	74995	160511_QHF_FH_JSI11i_1	126.76	108.45			0.82969	0.88955	16.503	4	3	Median	1.413	1.1559	NaN	1	0	Median	0.82123	0.92544	NaN	1	1	Median	0.80075	0.78741	NaN	1	1	Median	0.83824	0.85505	NaN	1	1	Median	109070000	58701000	50372000	15203000	6544100	8658700	34349000	18367000	15982000	27396000	16383000	11014000	32124000	17407000	14717000	44709	2638;2895	42082	271010;271011;271012;271013	363484;363485;363486;363487	363484			4	
SDVLQPGAEVTTDDR	0	Unmodified	1601.7533	0.75329395	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.374	39.739	2	8.7131E-15	35824	160511_QHF_FH_JSI11i_1	162.32	139.4			0.80801	0.91664	6.7794	4	0	Linear	1.1661	0.97174	NaN	1	0	Median	0.79601	0.94442	NaN	1	0	Median	0.92077	0.88968	NaN	1	0	Median	0.80807	0.83401	NaN	1	0	Median	622550000	327810000	294750000	117760000	55053000	62706000	174180000	92577000	81599000	159630000	88392000	71233000	170990000	91785000	79208000	44710	1814	42083	271014;271015;271016;271017	363488;363489;363490;363491;363492;363493;363494;363495	363489			8	
SDVLQPGAEVTTDDRAYVR	0	Unmodified	2091.0233	0.023261223	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	51.263	49.867	3	0.007389	42624	160511_QHF_FH_JSI12i_2	40.515	32.426			1.0392	1.1022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0392	1.1022	NaN	1	0	Median	23345000	13486000	9858700	0	0	0	0	0	0	0	0	0	23345000	13486000	9858700	44711	1814	42084	271018	363496;363497	363496			2	
SDVSPIIQPVPSIK	1	Unmodified	1478.8344	0.83444481	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.356	67.788	2	3.5098E-05	61611	160511_QHF_FH_JSI11i_1	140.63	117.31			0.1763	0.19042	8.5312	4	4	Median	0.22874	0.18621	NaN	1	1	Median	0.16422	0.19473	NaN	1	1	Median	0.17023	0.1629	NaN	1	1	Median	0.18259	0.19547	NaN	1	1	Median	1099400000	924510000	174880000	283960000	231470000	52489000	229160000	193640000	35521000	310840000	262770000	48063000	275430000	236620000	38809000	44712	1501	42085	271019;271020;271021;271022	363498;363499;363500;363501	363498			4	
SDVSSTGQGVIDK	1	Unmodified	1291.6256	0.62557424	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				71.449	70.595	2	0.04617	62222	160511_QHF_FH_JSI9i_2	45.137	24.807			3.4048	2.9799	NaN	1	1	Median	3.4048	2.9799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28244000	5601200	22642000	28244000	5601200	22642000	0	0	0	0	0	0	0	0	0	44713	2686	42086	271023	363502	363502			1	
SDVWSFGILLTELVTK	1	Unmodified	1806.9768	0.97675195	845	P06241	FYN	Tyrosine-protein kinase Fyn	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101.48	92.308	3	2.2045E-07	53418	160513_QHF_FH_JSI9Kac_6	106.19	95.553			1.1064	0.95818	NaN	1	0	Median	1.1064	0.95818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46953000	19153000	27799000	46953000	19153000	27799000	0	0	0	0	0	0	0	0	0	44714	845	42087	271024	363503	363503			1	
SDVWSFGVLLWELMTR	0	Unmodified	1937.971	0.97095506	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.82	98.095	2	0.00038392	58078	160513_QHF_FH_JSI10Kac_6	174.39	145.18			1.138	1.3649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.138	1.3649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63757000	29347000	34410000	0	0	0	63757000	29347000	34410000	0	0	0	0	0	0	44715	907	42088	271025	363504;363505	363505			2	
SDVYYFSPSGK	1	Unmodified	1248.5663	0.56626845	5228	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2			2	1	1	1	50.647	45.76	2	0.00010655	41037	160511_QHF_FH_JSI9i_1	98.048	73.273			0.73686	0.7837	38.841	5	4	Median	0.92509	0.76707	66.856	2	2	Median	0.55886	0.65119	NaN	1	1	Median	1.1442	1.115	NaN	1	0	Median	0.73686	0.7837	NaN	1	1	Median	143730000	83733000	59997000	90978000	49752000	41226000	48153000	31503000	16650000	2878300	1347500	1530800	1720900	1130400	590490	44716	5228	42089	271026;271027;271028;271029;271030	363506;363507;363508;363509;363510	363509			5	
SDWQLIVELKK	2	Unmodified	1357.7606	0.76055158	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	72.89	72.694	2;3	6.3262E-10	63050	160511_QHF_FH_JSI12i_3	131.17	115.63			1.1612	0.97956	11.047	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2092	1.1428	NaN	1	0	Median	1.0594	1.0903	15.143	2	0	Median	143770000	62482000	81291000	0	0	0	0	0	0	25761000	10144000	15617000	118010000	52338000	65674000	44717	454	42090	271031;271032;271033	363511;363512;363513;363514;363515;363516	363514			6	
SDYAQLLEDMQNAFR	0	Unmodified	1799.8148	0.81484835	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.67	101.56	2	2.6496E-208	90130	160511_QHF_FH_JSI10i_2	325.93	301.64			0.72063	0.89483	8.9483	4	0	Linear	1.0301	0.87357	NaN	1	0	Median	0.83024	1.0293	NaN	1	0	Median	0.81696	0.83633	NaN	1	0	Median	0.81342	0.9166	NaN	1	0	Median	788400000	415570000	372830000	161710000	70705000	91000000	166850000	93069000	73779000	193590000	103290000	90294000	266260000	148500000	117750000	44718	1479	42091	271034;271035;271036;271037	363517;363518;363519;363520	363520			4	
SDYDGIGSR	0	Unmodified	968.41994	0.41993856	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	17.406	15.089	2	0.0002013	13014	160511_QHF_FH_JSI9i_1	85.161	65.801			0.85915	0.88381	3.7056	5	1	Median	1.0362	0.83589	NaN	1	0	Median	0.75387	0.8823	2.9735	2	0	Median	0.9116	0.88381	NaN	1	0	Median	0.85915	0.91955	NaN	1	1	Median	1087100000	561450000	525690000	235730000	124610000	111130000	313650000	171200000	142450000	273850000	131650000	142200000	263920000	134000000	129920000	44719	154	42092	271038;271039;271040;271041;271042	363521;363522;363523;363524;363525;363526;363527;363528	363528			8	
SDYDMVDYLNELR	0	Unmodified	1631.7137	0.71373732	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	91.583	91.176	2	2.6938E-15	81195	160511_QHF_FH_JSI9i_1	159.94	149.99			0.95809	0.94386	2.8769	4	2	Median	1.1329	0.94014	NaN	1	0	Median	0.79419	0.93772	NaN	1	1	Median	1.0147	0.9969	NaN	1	0	Median	0.90468	0.9476	NaN	1	1	Median	551590000	290670000	260920000	76791000	37955000	38836000	144690000	85265000	59427000	174240000	85575000	88661000	155870000	81875000	73997000	44720	2585	42093	271043;271044;271045;271046;271047	363529;363530;363531;363532;363533;363534	363533			6	
SDYLNTFEFMDK	1	Unmodified	1508.6493	0.64934615	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	83.725	83.048	2	1.4791E-78	73170	160511_QHF_FH_JSI9i_2	250.72	220.47			0.96786	0.83988	16.137	9	2	Median	0.98353	0.82875	13.368	3	1	Median	0.78926	0.95507	26.345	2	0	Median	0.80416	0.79772	23.764	2	1	Median	0.83918	0.90812	11.048	2	0	Median	2260800000	1165600000	1095200000	440930000	211650000	229280000	604400000	315270000	289130000	646330000	320090000	326240000	569110000	318590000	250520000	44721	576	42094	271048;271049;271050;271051;271052;271053;271054;271055;271056	363535;363536;363537;363538;363539;363540;363541;363542;363543;363544;363545;363546;363547;363548;363549;363550;363551;363552;363553;363554;363555;363556;363557;363558	363555			24	
SDYMFQR	0	Unmodified	945.40145	0.40145173	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.097	29.183	2	0.0012382	24583	160511_QHF_FH_JSI11i_2	122.98	111.61			0.95993	1.0214	5.7799	4	0	Median	1.1998	1.0268	NaN	1	0	Median	0.90705	1.1	NaN	1	0	Median	1.0159	1.016	NaN	1	0	Median	0.84673	0.95528	NaN	1	0	Median	337660000	156220000	181440000	66127000	25256000	40871000	65453000	34821000	30632000	119770000	56327000	63442000	86309000	39812000	46497000	44722	1629	42095	271057;271058;271059;271060	363559;363560;363561;363562;363563;363564	363563			6	
SDYSEAAK	1	Unmodified	869.37668	0.37667677	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	5.68	5	1			3	3				1	3	4	4	7.7099	3.6171	2	0.00024966	4504	160511_QHF_FH_JSI9i_1	116.37	101.96			0.83781	0.84905	17.605	11	1	Median	1.255	1.0329	NaN	1	0	Median	0.72025	0.82936	15.884	3	0	Median	0.89304	0.87458	26.162	4	0	Median	0.81964	0.84905	10.821	3	1	Median	3881800000	1907700000	1974000000	802520000	343540000	458980000	1120100000	571320000	548730000	1056800000	536780000	520000000	902430000	456090000	446330000	44723	2094	42096	271061;271062;271063;271064;271065;271066;271067;271068;271069;271070;271071;271072	363565;363566;363567;363568;363569;363570;363571;363572;363573;363574;363575;363576;363577;363578	363574			14	
SEAAGSPDQGSTYSPAR	0	Unmodified	1679.7387	0.73870652	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	18.192	17.699	2	4.0137E-11	14977	160511_QHF_FH_JSI11i_1	135.58	114.81			0.97348	0.78764	9.8043	4	4	Linear	0.94502	0.76491	NaN	1	1	Median	0.68192	0.81105	NaN	1	1	Median	0.98821	0.93301	NaN	1	1	Median	0.71634	0.75162	NaN	1	1	Median	246620000	127310000	119310000	59164000	26004000	33160000	59967000	33889000	26078000	64824000	31377000	33446000	62665000	36037000	26629000	44724	4237	42097	271073;271074;271075;271076;271077	363579;363580;363581;363582;363583	363580			5	
SEAANGNLDFVLSFLK	1	Unmodified	1723.8781	0.87810054	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	102.1	101.99	2;3	1.6842E-261	87891	160511_QHF_FH_JSI12i_2	358.82	307.55			0.91668	0.94698	5.468	4	1	Median	1.0316	0.87911	NaN	1	0	Median	0.75427	0.92025	NaN	1	1	Median	0.95546	0.97448	NaN	1	0	Median	0.87948	0.99047	NaN	1	0	Median	963170000	496910000	466260000	204740000	91080000	113660000	201740000	116850000	84886000	289760000	153500000	136260000	266930000	135480000	131450000	44725	1544	42098	271078;271079;271080;271081;271082	363584;363585;363586;363587;363588;363589;363590	363585			7	
SEAGAGPGPK	1	Unmodified	869.4243	0.42429566	4599	Q9GZP8	IMUP	Immortalization up-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.52	4	3	3		2	3	2			2	5	5	5	5.743	2.514	2	2.5408E-10	3098	160511_QHF_FH_JSI11i_1	140.5	85.976			0.95675	0.94808	18.265	17	1	Median	1.1743	0.95866	2.4788	2	0	Median	0.64454	0.94808	16.941	5	0	Linear	0.95675	0.92556	29.219	5	0	Median	1.0123	1.0371	9.8837	5	1	Median	7933700000	4147500000	3786100000	1923800000	911790000	1012000000	2022200000	1186100000	836040000	1903500000	978020000	925490000	2084200000	1071600000	1012600000	44726	4599	42099	271083;271084;271085;271086;271087;271088;271089;271090;271091;271092;271093;271094;271095;271096;271097;271098;271099	363591;363592;363593;363594;363595;363596;363597;363598;363599;363600;363601;363602;363603;363604;363605;363606;363607;363608;363609;363610	363591			18	
SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPK	1	Acetyl (Protein N-term)	3136.5048	0.50479699	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		66.608	66.079	3;4	1.7335E-13	60163	160511_QHF_FH_JSI11i_1	39.899	33.932			1.2062	1.2212	40.421	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.73286	0.86096	49.529	2	1	Median	1.2283	1.2212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	366210000	221520000	144690000	94242000	94242000	0	141540000	66317000	75225000	130420000	60960000	69463000	0	0	0	44727	1106	42100	271100;271101;271102;271103	363611;363612;363613;363614	363611			4	
SEAHLTELLEEICDR	0	Unmodified	1813.8516	0.85162779	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	85.134	85.048	3	0.00040581	75973	160511_QHF_FH_JSI11i_3	57.794	51.762			1.1159	1.0832	2.1049	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.123	1.0672	NaN	1	0	Median	1.1088	1.0995	NaN	1	0	Median	52867000	30271000	22596000	0	0	0	0	0	0	25012000	11867000	13145000	27855000	18404000	9450800	44728	5508	42101	271104;271105	363615	363615			1	
SEAITSVDDAIRK	1	Unmodified	1403.7256	0.72562264	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	1				By MS/MS	2	0		2											2	40.034	38.669	2	1.3335E-06	32973	160511_QHF_FH_JSI12i_2	90.685	63.57			0.60285	0.68314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60285	0.68314	NaN	1	1	Median	10584000	7523100	3061100	0	0	0	0	0	0	0	0	0	10584000	7523100	3061100	44729	4751	42102	271106;271107	363616;363617	363617			2	
SEALFLLLSNFTGLK	1	Unmodified	1651.9185	0.91850879	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	5.4		1	1						8	2	2	2	4	100.08	93.32	2;3	2.795E-70	51666	160513_QHF_FH_JSI11Kac_6	259.75	220.6			1.2917	1.2818	65.674	10	4	Median	0.90297	0.77399	123.44	2	0	Median	0.82502	0.99567	3.2017	2	1	Median	1.0113	0.95039	42.364	2	1	Median	2.1412	2.2671	35.702	4	2	Median	1990900000	1060400000	930560000	406110000	210430000	195690000	548370000	282960000	265410000	383550000	256580000	126960000	652900000	310400000	342500000	44730	3536	42103	271108;271109;271110;271111;271112;271113;271114;271115;271116;271117	363618;363619;363620;363621;363622;363623;363624;363625;363626;363627	363620			10	
SEALGVGDVK	1	Unmodified	973.50803	0.50802529	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	31.247	25.421	2	5.6086E-06	25801	160511_QHF_FH_JSI12i_1	123.86	86.302			1.0624	1.0212	14.118	8	0	Median	1.287	1.0336	0.39786	2	0	Median	0.95461	1.1206	32.841	2	0	Median	1.0126	0.97807	1.2683	2	0	Median	1.0052	1.0866	10.094	2	0	Median	1199200000	577440000	621710000	244430000	106470000	137960000	368300000	211510000	156790000	319880000	134960000	184920000	266550000	124510000	142040000	44731	5280	42104	271118;271119;271120;271121;271122;271123;271124;271125	363628;363629;363630;363631;363632;363633;363634;363635;363636;363637;363638;363639	363630			12	
SEALSSVLDQEEAMEIK	1	Unmodified	1877.8928	0.8928239	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	78.155	77.992	2	7.0649E-22	70751	160511_QHF_FH_JSI10i_1	170.79	138.27			1.2136	1.4125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2136	1.4125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39800000	20772000	19028000	0	0	0	39800000	20772000	19028000	0	0	0	0	0	0	44732	2320	42105	271126;271127	363640;363641;363642	363642			3	
SEAPETPMEEEAELVLTEK	1	Unmodified	2130.9878	0.9878465	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		90.39	90.168	2;3	8.0162E-05	82136	160511_QHF_FH_JSI11i_1	79.511	69.552			0.9959	1.0453	23.987	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77287	0.88225	NaN	1	1	Median	1.2833	1.2386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55237000	27204000	28033000	0	0	0	26444000	16793000	9650700	28793000	10411000	18382000	0	0	0	44733	2904	42106	271128;271129;271130;271131	363643;363644;363645;363646	363643			4	
SEAPNWATQDSGFY	0	Unmodified	1571.6529	0.65285163	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	69.508	68.956	2	0.00010372	61375	160511_QHF_FH_JSI9i_1	108.47	107.94			1.0263	1.1127	7.3684	4	0	Median	1.3525	1.1083	NaN	1	0	Median	0.96638	1.1214	NaN	1	0	Median	1.0092	0.96305	NaN	1	0	Median	1.0438	1.1172	NaN	1	0	Median	713030000	348940000	364090000	123510000	54115000	69390000	150510000	75704000	74811000	155280000	76039000	79239000	283730000	143080000	140650000	44734	1909	42107	271132;271133;271134;271135	363647;363648;363649;363650	363650			3	
SEAPSGESR	0	Unmodified	918.40429	0.4042885	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0			By MS/MS		13	0						1						1		4.8287	-2.4921	2	0.019323	1520	160513_QHF_FH_JSI11Kac_3	52.255	12.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44735	40	42108	271136	363651	363651			1	
SEAPSGESRK	1	Unmodified	1046.4993	0.49925152	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.16	0.812	5	6	8							2	5	6	6	2.2269	2.0637	2;3	3.8558E-06	750	160511_QHF_FH_JSI11i_3	87.298	58.571			0.73911	0.61529	68.925	19	4	Median	1.5976	1.3493	111.05	2	1	Median	0.85688	0.95753	101.79	5	2	Median	0.78378	0.75476	35.747	6	0	Median	0.50578	0.52286	56.179	6	1	Median	541580000	280270000	261310000	64001000	23342000	40659000	126760000	66232000	60525000	176510000	88812000	87693000	174320000	101890000	72433000	44736	40	42109	271137;271138;271139;271140;271141;271142;271143;271144;271145;271146;271147;271148;271149;271150;271151;271152;271153;271154;271155	363652;363653;363654;363655;363656;363657;363658;363659;363660;363661;363662;363663;363664;363665;363666;363667;363668;363669;363670;363671	363653			20	
SEAQKPSEK	2	Unmodified	1002.4982	0.49818889	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.18	8	5	1				1			2	4	4	5	4.5618	3.7013	2;3	9.851E-07	2149	160511_QHF_FH_JSI10i_2	140.83	102.7			1.0174	1.1006	47.135	13	2	Median	1.4381	1.1712	NaN	1	0	Median	0.9002	1.0555	5.4048	3	1	Plateau	1.1361	1.1246	17.834	4	1	Median	1.0174	1.0834	73.776	5	0	Median	5134600000	2659100000	2475500000	172990000	66936000	106060000	1790000000	1083700000	706240000	1200500000	578010000	622530000	1971000000	930360000	1040700000	44737	5633	42110	271156;271157;271158;271159;271160;271161;271162;271163;271164;271165;271166;271167;271168;271169;271170	363672;363673;363674;363675;363676;363677;363678;363679;363680;363681;363682;363683;363684;363685;363686;363687;363688;363689;363690;363691	363690			20	
SEASAFGASHHVAYFEASAK	1	Unmodified	2065.9494	0.949368	966	P10301	RRAS	Ras-related protein R-Ras	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	14.6	4.09			1						8	2	3	2	2	50.515	42.372	3;4	2.7392E-16	36359	160511_QHF_FH_JSI12i_3	155.28	147.46			1.2649	1.0806	34.38	7	1	Median	1.1104	0.94765	18.57	2	0	Median	0.64259	0.75956	5.8458	2	1	Median	1.5805	1.5704	0.97132	2	0	Median	1.4663	1.5068	NaN	1	0	Median	136270000	63689000	72583000	36451000	17899000	18552000	20835000	13506000	7329000	10972000	4071300	6900900	68014000	28212000	39801000	44738	966	42111	271171;271172;271173;271174;271175;271176;271177;271178;271179	363692;363693;363694;363695;363696;363697;363698	363694			7	
SEASGPQLLPVR	0	Unmodified	1252.6776	0.67755023	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		10	5.66		1					2					3		54.508	48.728	2	4.0608E-05	42076	160511_QHF_FH_JSI11i_2	120.09	102.23			0.86921	0.8332	9.7703	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86921	0.8332	9.7703	2	1	Median	NaN	NaN	NaN	0	0	Median	64971000	34201000	30770000	0	0	0	0	0	0	64971000	34201000	30770000	0	0	0	44739	2832	42112	271180;271181;271182	363699;363700;363701;363702	363701			4	
SEASLHPVLMSEAPWNTR	0	Oxidation (M)	2039.9735	0.97347426	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	58.494	58.363	3	2.9802E-05	51820	160511_QHF_FH_JSI11i_3	75.239	70.529			0.97471	0.94892	8.5675	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0603	1.0082	NaN	1	0	Median	0.89606	0.89314	NaN	1	0	Median	107990000	59493000	48493000	0	0	0	0	0	0	54206000	31104000	23102000	53780000	28389000	25391000	44740	758	42113	271183;271184	363703;363704;363705	363704		261	3	
SEASLHPVLMSEAPWNTR	0	Unmodified	2023.9786	0.97855964	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							3	4	4	3	69.975	69.317	2;3	7.4203E-12	61556	160511_QHF_FH_JSI10i_2	124.77	108.08			1.0189	1.0374	11.373	12	6	Median	1.2108	1.0315	2.0969	2	2	Median	0.84656	1.0281	9.1145	3	2	Median	0.97741	0.93787	9.5442	4	2	Median	1.0223	1.0515	13.162	3	0	Median	1764100000	894520000	869570000	343650000	145920000	197720000	340130000	188940000	151190000	726890000	378740000	348150000	353430000	180910000	172510000	44741	758	42113	271185;271186;271187;271188;271189;271190;271191;271192;271193;271194;271195;271196;271197;271198	363706;363707;363708;363709;363710;363711;363712;363713;363714;363715;363716;363717;363718;363719;363720;363721;363722;363723;363724;363725	363721			20	
SEASSNLK	1	Unmodified	834.40831	0.40831125	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.6946	5.0881	2	0.019783	2962	160511_QHF_FH_JSI9i_1	46.426	17.088			1.1948	0.96704	NaN	1	0	Median	1.1948	0.96704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	175110000	84385000	90724000	175110000	84385000	90724000	0	0	0	0	0	0	0	0	0	44742	2787	42114	271199	363726	363726			1	
SEATFQFTVER	0	Unmodified	1313.6252	0.62518031	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	55.21	53.843	2	0.04693	46135	160511_QHF_FH_JSI12i_2	48.602	34.599			1.8871	2.1408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8871	2.1408	NaN	1	0	Median	34846000	13477000	21369000	0	0	0	0	0	0	0	0	0	34846000	13477000	21369000	44743	3922	42115	271200	363727	363727			0	
SEAVRQDEQQRK	1	Unmodified	1472.7332	0.73316763	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			4.7964	4.3894	3	0.00054899	2398	160511_QHF_FH_JSI10i_2	78.903	42.61			0.52537	0.63179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52537	0.63179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56593000	35709000	20883000	0	0	0	56593000	35709000	20883000	0	0	0	0	0	0	44744	5213	42116	271201	363728	363728			1	
SEAVVEYVFSGSR	0	Unmodified	1428.6885	0.68850885	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.4	1	4	3				2	5	2	2	5	5	5	71.258	65.763	2	1.3967E-41	57959	160511_QHF_FH_JSI11i_2	209.85	191.07			0.94477	1.0418	48.792	16	5	Median	1.368	1.1599	11.189	2	0	Median	1.0111	1.2171	14.379	4	1	Median	0.78794	0.73338	53.354	5	2	Median	0.97673	1.0811	51.096	5	2	Median	2357300000	1228900000	1128400000	317110000	128050000	189060000	496210000	253010000	243200000	904750000	513920000	390830000	639270000	333930000	305340000	44745	3213	42117	271202;271203;271204;271205;271206;271207;271208;271209;271210;271211;271212;271213;271214;271215;271216;271217;271218	363729;363730;363731;363732;363733;363734;363735;363736;363737;363738;363739;363740;363741;363742;363743;363744;363745;363746;363747;363748;363749;363750;363751;363752;363753	363741			25	
SECLNNIGDSSPLIR	0	Unmodified	1673.8043	0.80428367	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									2	2	2	58.452	57.75	2	1.277E-29	52417	160511_QHF_FH_JSI11i_1	185.37	159.32			1.2196	1.2921	26.905	4	2	Median	NaN	NaN	NaN	0	0	Median	0.90423	1.0602	NaN	1	1	Median	0.98844	0.97157	NaN	1	0	Median	1.511	1.6091	3.0597	2	1	Median	343560000	153230000	190320000	0	0	0	88117000	54697000	33420000	118640000	50958000	67686000	136800000	47578000	89218000	44746	3914	42118	271219;271220;271221;271222;271223;271224	363754;363755;363756;363757;363758;363759;363760;363761	363755			8	
SEDAEVLDATPSGIMK	1	Unmodified	1661.7818	0.78181689	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	62.869	62.207	2;3	2.875E-65	56340	160511_QHF_FH_JSI10i_1	228.61	192.27			0.94657	0.96499	9.7155	7	0	Median	1.2216	0.98337	19.659	2	0	Median	0.83374	0.98109	5.0599	2	0	Median	1.0804	1.0775	NaN	1	0	Median	0.90317	0.93497	4.4695	2	0	Median	596440000	289040000	307410000	134390000	54901000	79491000	168010000	81345000	86665000	131080000	68985000	62100000	162960000	83805000	79153000	44747	2902	42119	271225;271226;271227;271228;271229;271230;271231	363762;363763;363764;363765;363766;363767;363768;363769;363770;363771;363772;363773;363774;363775	363771			13	
SEDDESGAGELTR	0	Unmodified	1364.5692	0.56918158	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.646	16.371	2	8.2199E-08	13879	160511_QHF_FH_JSI10i_1	152.85	130.11			0.65348	0.60832	34.516	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.59029	0.68727	NaN	1	0	Median	0.65348	0.60832	NaN	1	0	Median	0.35102	0.35899	NaN	1	1	Median	204360000	123180000	81177000	0	0	0	50495000	29280000	21214000	67779000	38410000	29369000	86087000	55493000	30594000	44748	1411	42120	271232;271233;271234	363776;363777;363778;363779	363779			4	
SEDDESGAGELTREELR	0	Unmodified	1891.8395	0.83954278	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								2	4	2	5	36.335	35.622	2;3	4.8823E-07	32322	160511_QHF_FH_JSI12i_1	94.882	74.791			1.182	1.164	18.012	13	10	Median	1.3929	1.1909	18.207	2	0	Median	0.88068	1.0251	33.572	4	3	Median	1.2312	1.2106	5.9919	2	2	Median	1.1596	1.2455	5.7429	5	5	Median	2913700000	1360000000	1553700000	246440000	85622000	160810000	900730000	452790000	447940000	847040000	397020000	450030000	919480000	424560000	494910000	44749	1411	42121	271235;271236;271237;271238;271239;271240;271241;271242;271243;271244;271245;271246;271247	363780;363781;363782;363783;363784;363785;363786;363787;363788;363789;363790;363791;363792;363793;363794;363795	363784			16	
SEDDSAVPLAK	1	Unmodified	1130.5455	0.54553301	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	6				3					2	2	3	2	29.784	26.493	2	4.836E-18	23674	160511_QHF_FH_JSI12i_1	160.59	140.8			1.0494	1.061	17.146	9	4	Median	1.19	0.9631	30.07	2	2	Median	0.97356	1.119	7.5206	2	0	Median	1.146	1.0565	23.094	3	2	Median	1.0339	1.0956	7.7865	2	0	Median	1338200000	617470000	720750000	463070000	180420000	282660000	236670000	124480000	112190000	407810000	193280000	214540000	230670000	119310000	111360000	44750	5543	42122	271248;271249;271250;271251;271252;271253;271254;271255;271256	363796;363797;363798;363799;363800;363801;363802;363803;363804;363805;363806	363799			11	
SEDFGVNEDLADSDAR	0	Unmodified	1738.7282	0.72820141	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.307	50.634	2	4.0666E-159	45965	160511_QHF_FH_JSI12i_1	298.82	292.82			0.95061	0.95571	8.3872	4	0	Median	1.1982	0.98566	NaN	1	0	Median	0.72198	0.83949	NaN	1	0	Median	0.93594	0.92667	NaN	1	0	Median	0.96552	1.0148	NaN	1	0	Median	533730000	278920000	254810000	111150000	50437000	60709000	154510000	87089000	67416000	129530000	63338000	66194000	138550000	78054000	60494000	44751	805	42123	271257;271258;271259;271260	363807;363808;363809;363810;363811;363812;363813;363814	363810			8	
SEDFSLPAYMDR	0	Unmodified	1429.6184	0.61838038	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.528	67.96	2	1.2849E-23	61761	160511_QHF_FH_JSI11i_1	182.28	161.41			1.0054	1.064	15.148	4	0	Median	1.7234	1.402	NaN	1	0	Median	0.934	1.1097	NaN	1	0	Median	1.0527	1.0203	NaN	1	0	Median	0.96024	1.0147	NaN	1	0	Median	1066800000	514260000	552560000	271880000	105390000	166480000	298050000	154120000	143930000	285620000	142050000	143570000	211270000	112700000	98576000	44752	1026	42124	271261;271262;271263;271264	363815;363816;363817;363818;363819;363820;363821	363816			7	
SEDFSLPAYMDRR	0	Unmodified	1585.7195	0.7194914	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.46	2	8	4					1	1	3	3	6	4	60.535	58.765	2;3	3.0169E-53	52131	160511_QHF_FH_JSI11i_3	174.9	152.67			0.97356	0.99629	28.587	16	0	Median	1.2872	1.0627	13.139	3	0	Median	0.83695	1.0099	9.0282	3	0	Plateau	1.0035	0.98017	44.072	6	0	Median	0.86543	0.91016	5.7566	4	0	Median	4890200000	2434200000	2456000000	788170000	334470000	453700000	1467000000	802850000	664140000	1604500000	755290000	849210000	1030500000	541600000	488920000	44753	1026	42125	271265;271266;271267;271268;271269;271270;271271;271272;271273;271274;271275;271276;271277;271278;271279;271280	363822;363823;363824;363825;363826;363827;363828;363829;363830;363831;363832;363833;363834;363835;363836;363837;363838;363839;363840;363841;363842;363843;363844;363845;363846;363847;363848;363849;363850;363851;363852;363853;363854;363855;363856;363857;363858;363859	363824			38	
SEDGEIVSTPR	0	Unmodified	1188.5622	0.5622457	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	23.981	23.301	2	0.005264	19925	160511_QHF_FH_JSI9i_1	53.597	41.07			0.76273	0.78346	19.648	3	0	Median	1.0531	0.87128	NaN	1	0	Median	0.50459	0.59538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76273	0.78346	NaN	1	0	Median	460520000	256950000	203570000	167580000	87392000	80186000	192610000	102500000	90114000	0	0	0	100330000	67060000	33268000	44754	2303	42126	271281;271282;271283	363860;363861	363861			2	
SEDGTPAEDGTPAATGGSQPPSMGR	0	Unmodified	2372.0186	0.01864613	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	34.95	34.308	2;3	3.0855E-90	30653	160511_QHF_FH_JSI10i_1	243.9	239.47			0.99882	1.0212	18.238	7	0	Median	1.3291	1.0939	41.278	2	0	Median	0.88598	1.0056	NaN	1	0	Median	1.0271	0.97939	9.2325	2	0	Median	1.0153	1.0743	7.1637	2	0	Median	275960000	122670000	153290000	84444000	32887000	51557000	31618000	14286000	17333000	77687000	34913000	42774000	82207000	40584000	41623000	44755	4361	42127	271284;271285;271286;271287;271288;271289;271290	363862;363863;363864;363865;363866;363867;363868;363869;363870;363871;363872;363873;363874;363875;363876;363877;363878;363879	363873			18	
SEDGTPAEDGTPAATGGSQPPSMGRK	1	Unmodified	2500.1136	0.11360915	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.689	28.248	3	3.2507E-09	25329	160511_QHF_FH_JSI12i_1	68.231	65.178			0.91109	0.99977	23.434	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0045	1.1799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82641	0.8471	NaN	1	1	Median	61957000	29597000	32359000	0	0	0	28110000	9897500	18213000	0	0	0	33846000	19700000	14147000	44756	4361	42128	271291;271292;271293	363880;363881;363882	363881			3	
SEDGVEGDLGETQSR	0	Unmodified	1577.6805	0.68052294	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	28.849	26.606	2	9.5197E-40	23815	160511_QHF_FH_JSI12i_1	198.74	190.82			0.87544	0.92292	21.758	5	1	Median	1.1974	0.99161	NaN	1	0	Median	0.78543	0.89713	NaN	1	0	Median	0.97407	0.96607	42.763	2	1	Median	0.87544	0.92292	NaN	1	0	Median	400460000	222820000	177640000	76320000	34904000	41416000	119650000	70194000	49454000	110620000	66094000	44522000	93875000	51627000	42248000	44757	2286	42129	271294;271295;271296;271297;271298	363883;363884;363885;363886;363887;363888;363889;363890;363891	363886			9	
SEDIASQSNK	1	Unmodified	1077.4938	0.49383179	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	8.0493	7.8115	2	2.3056E-05	5534	160511_QHF_FH_JSI11i_1	98.044	65.689			0.92715	0.93937	27.29	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57234	0.66987	NaN	1	1	Median	1.0007	0.96785	NaN	1	0	Median	0.53526	0.56793	NaN	1	1	Median	137230000	80575000	56658000	0	0	0	51977000	32444000	19533000	45965000	24717000	21248000	39291000	23414000	15877000	44758	3425	42130	271299;271300;271301	363892;363893;363894;363895	363892			4	
SEDLDNSIDK	1	Unmodified	1134.5041	0.50406212	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	2	1	23.617	21.793	2	7.8978E-09	18719	160511_QHF_FH_JSI9i_1	123.96	98.017			1.2601	1.2334	26.203	6	5	Median	1.531	1.2634	NaN	1	1	Median	0.91069	1.0556	18.623	2	2	Median	1.7935	1.756	0.80176	2	2	Median	1.0237	1.0631	NaN	1	0	Median	808550000	409050000	399490000	155640000	62717000	92922000	317240000	190900000	126340000	184230000	73972000	110260000	151440000	81462000	69983000	44759	5479	42131	271302;271303;271304;271305;271306;271307;271308	363896;363897;363898;363899;363900;363901;363902	363902			7	
SEDLLDYGPFR	0	Unmodified	1310.6143	0.61428128	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	77.751	77.013	2	9.2352E-31	70180	160511_QHF_FH_JSI12i_1	196.88	196.88			0.96825	0.97706	25.485	9	1	Median	1.0665	0.91029	41.317	3	1	Median	0.63822	0.76502	3.4483	2	0	Median	0.99539	0.98598	0.52249	2	0	Median	0.94265	1.006	1.713	2	0	Median	1232000000	647380000	584590000	238290000	117980000	120310000	300010000	180200000	119810000	395490000	197310000	198180000	298180000	151890000	146280000	44760	816	42132	271309;271310;271311;271312;271313;271314;271315;271316;271317	363903;363904;363905;363906;363907;363908;363909;363910;363911;363912;363913;363914;363915;363916;363917;363918;363919;363920;363921;363922;363923;363924	363910			22	
SEDPDQQYLILNTAR	0	Unmodified	1761.8533	0.85334235	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	1	3	63.408	61.077	2	3.8316E-138	55256	160511_QHF_FH_JSI12i_1	259.7	232.37			0.93848	0.96404	4.6325	5	0	Median	1.1594	0.96404	NaN	1	0	Median	0.77556	0.90323	NaN	1	0	Median	1.0137	0.98638	NaN	1	0	Median	0.9191	0.98111	5.6641	2	0	Median	1390800000	770050000	620740000	358280000	186250000	172030000	338680000	201700000	136980000	383130000	194230000	188900000	310710000	187870000	122840000	44761	4212	42133	271318;271319;271320;271321;271322;271323	363925;363926;363927;363928;363929;363930;363931;363932;363933	363928			9	
SEDPDQQYLILNTARK	1	Unmodified	1889.9483	0.94830537	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	52.678	51.819	3	5.3145E-05	44404	160511_QHF_FH_JSI12i_2	87.088	77.834			1.0671	1.1085	11.758	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0376	1.0704	NaN	1	0	Median	1.2093	1.2978	5.3929	2	1	Median	198030000	97878000	100150000	0	0	0	0	0	0	93123000	47807000	45316000	104900000	50071000	54833000	44762	4212	42134	271324;271325;271326	363934;363935;363936	363934			3	
SEDPPGQEAGSEEEGSSASGLAK	1	Unmodified	2217.9509	0.95094372	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	29.014	28.427	2	2.1282E-24	25166	160511_QHF_FH_JSI10i_1	173.58	152.03			0.9315	0.95181	11.442	5	4	Median	1.2659	1.0297	NaN	1	0	Median	0.93523	1.0861	NaN	1	1	Median	0.87446	0.8549	NaN	1	1	Median	0.86895	0.89108	9.3245	2	2	Median	323040000	162090000	160960000	55134000	22520000	32614000	69950000	33386000	36564000	57450000	29410000	28040000	140510000	76773000	63738000	44763	485	42135	271327;271328;271329;271330;271331	363937;363938;363939;363940;363941;363942	363941			6	
SEDSTKDDIDLDALAAEIEGAGAAK	2	Unmodified	2504.1766	0.17658656	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1		By MS/MS		By MS/MS	1	0	2										1		1	99.983	99.901	3	5.9639E-08	90337	160511_QHF_FH_JSI12i_1	72.805	65.183			0.83186	0.89882	40.314	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60226	0.67588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.149	1.1953	NaN	1	1	Median	55094000	27257000	27837000	0	0	0	13203000	10160000	3042600	0	0	0	41891000	17097000	24794000	44764	454	42136	271332;271333	363943;363944	363943			2	
SEDTAVQHGLEGLSISK	1	Unmodified	1769.8796	0.8795571	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		5								1	1	2	1	54.545	53.584	2;3	1.0896E-23	46369	160511_QHF_FH_JSI11i_2	134.68	91.6			0.86752	1.0847	12.461	4	0	Linear	0.88429	0.75047	NaN	1	0	Median	0.76377	0.94206	NaN	1	0	Median	0.97904	0.99369	NaN	1	0	Median	0.85108	0.93765	NaN	1	0	Median	402080000	225700000	176380000	60836000	33278000	27558000	86819000	51706000	35114000	179480000	92224000	87259000	74941000	48490000	26450000	44765	213	42137	271334;271335;271336;271337;271338	363945;363946;363947	363946			3	
SEDTTGPITGLALTSVNK	1	Unmodified	1802.9262	0.92617294	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.891	70.358	2	8.1895E-31	63630	160511_QHF_FH_JSI10i_1	185.95	162.72			0.6901	0.71952	9.2739	4	0	Median	0.91844	0.74622	NaN	1	0	Median	0.69788	0.81843	NaN	1	0	Median	0.68241	0.66153	NaN	1	0	Median	0.67422	0.69379	NaN	1	0	Median	223610000	128590000	95022000	55214000	26237000	28978000	56433000	32836000	23597000	60036000	33371000	26665000	51929000	36147000	15783000	44766	3838	42138	271339;271340;271341;271342	363948;363949;363950;363951;363952	363950			4	
SEDVPYTAALTAVRPSR	0	Unmodified	1831.9428	0.94282606	2721	Q15904	ATP6AP1	V-type proton ATPase subunit S1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							2	2	1		60.753	59.786	3	4.143E-06	52683	160511_QHF_FH_JSI9i_2	67.685	49.547			0.76081	0.89741	21.035	4	2	Linear	1.2684	1.0864	NaN	1	1	Median	0.88234	1.0592	0.8112	2	0	Median	1.6398	1.6256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	293460000	140930000	152530000	80369000	34321000	46048000	169330000	89199000	80127000	43764000	17407000	26357000	0	0	0	44767	2721	42139	271343;271344;271345;271346;271347	363953;363954;363955;363956;363957;363958	363955			6	
SEDVWLEAAR	0	Unmodified	1174.5619	0.56185177	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.615	51.088	2	0.014314	44026	160511_QHF_FH_JSI11i_2	52.79	33.519			3.0845	3.0861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0845	3.0861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28734000	6547800	22186000	0	0	0	0	0	0	28734000	6547800	22186000	0	0	0	44768	623	42140	271348	363959	363959			1	
SEDYVDIVQGR	0	Unmodified	1279.6044	0.60444487	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	58.91	49.503	2	0.0025506	25547	160513_QHF_FH_JSI10Kac_3	76.465	48.723			1.5141	1.5314	60.995	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.60806	0.69778	NaN	1	1	Median	2.4304	2.3019	NaN	1	0	Median	0.94328	1.0188	NaN	1	0	Median	5140100	2460000	2680100	0	0	0	1328800	820710	508080	2065500	779980	1285500	1745800	859310	886520	44769	2194	42141	271349;271350;271351	363960;363961;363962;363963	363963			4	
SEDYVELVQR	0	Unmodified	1236.5986	0.59863121	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.799	48.119	2	1.8035E-07	42947	160511_QHF_FH_JSI9i_1	118.18	97.848			1.4374	1.4583	28.382	4	3	Median	1.3416	1.1131	NaN	1	0	Median	1.54	1.841	NaN	1	1	Median	1.9162	1.8638	NaN	1	1	Median	1.0778	1.1552	NaN	1	1	Median	521260000	209080000	312180000	114800000	50518000	64277000	130000000	52748000	77248000	169030000	61588000	107450000	107440000	44228000	63208000	44770	430	42142	271352;271353;271354;271355	363964;363965;363966;363967;363968	363968			5	
SEDYVELVQRK	1	Unmodified	1364.6936	0.69359423	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	41.908	40.944	3	0.00037555	35041	160511_QHF_FH_JSI12i_2	62.799	45.632			1.0944	1.1576	30.397	4	1	Linear	0.66276	0.58606	NaN	1	1	Median	0.70456	0.87893	NaN	1	0	Median	1.212	1.1948	NaN	1	0	Median	0.93294	1.0092	NaN	1	0	Median	170030000	93576000	76450000	30756000	19675000	11081000	41439000	23063000	18375000	54816000	25352000	29464000	43016000	25487000	17529000	44771	430	42143	271356;271357;271358;271359	363969;363970;363971;363972;363973	363969			5	
SEEAHAEDSVMDHHFR	0	Unmodified	1895.7857	0.78567349	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.421	27.383	4	0.037024	22831	160511_QHF_FH_JSI12i_3	20.389	18.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18404000	0	18404000	0	0	0	0	0	0	0	0	0	18404000	0	18404000	44772	3609	42144	271360	363974	363974			1	
SEEEALK	1	Unmodified	804.38651	0.38651317	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	27.505	27.192	2	0.0075188	24043	160511_QHF_FH_JSI11i_1	88.734	44.123			1.1346	1.1002	70.676	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9731	1.9196	78.72	2	2	Median	0.873	0.90286	NaN	1	1	Median	262520000	108350000	154170000	0	0	0	0	0	0	167100000	63750000	103350000	95427000	44600000	50826000	44773	1534	42145	271361;271362;271363;271364;271365	363975;363976;363977;363978;363979	363976			5	
SEEEFIHINNK	1	Unmodified	1358.6466	0.64664404	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.75	2	8					1	1		2	4	3	3	39.259	36.85	2;3	8.1379E-73	31353	160511_QHF_FH_JSI11i_2	253.26	241.22			1.0107	1.0027	11.488	12	0	Median	1.1368	0.97725	5.1012	2	0	Median	0.71119	0.86002	8.4513	4	0	Median	0.91634	0.99752	5.7639	3	0	Plateau	1.0434	1.0935	8.9123	3	0	Median	2338000000	1143200000	1194800000	340960000	147760000	193200000	558610000	305560000	253050000	845280000	390390000	454890000	593150000	299500000	293650000	44774	2614	42146	271366;271367;271368;271369;271370;271371;271372;271373;271374;271375;271376;271377	363980;363981;363982;363983;363984;363985;363986;363987;363988;363989;363990;363991;363992;363993;363994;363995;363996;363997;363998;363999;364000;364001	363994			22	
SEEEIDFLR	0	Unmodified	1136.535	0.53496832	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	57.496	56.838	2	0.00036231	51653	160511_QHF_FH_JSI12i_1	86.136	55.969			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44775	5494	42147	271378	364002	364002			1	
SEEELLVIFNK	1	Unmodified	1319.6973	0.69728262	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		86.812	86.241	2	0.0020104	76097	160511_QHF_FH_JSI9i_2	64.04	55.815			1.8049	1.7557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8049	1.7557	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8710400	2849700	5860800	0	0	0	0	0	0	8710400	2849700	5860800	0	0	0	44776	5095	42148	271379;271380	364003;364004	364003			2	
SEEENVVLK	1	Unmodified	1045.5292	0.52915466	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			24.305	24.011	2	0.0035474	21136	160511_QHF_FH_JSI10i_1	70.256	32.095			0.37021	0.44122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37021	0.44122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63782000	51673000	12109000	0	0	0	63782000	51673000	12109000	0	0	0	0	0	0	44777	4653	42149	271381	364005	364005			1	
SEEEQSSSSVK	1	Unmodified	1195.5204	0.52044047	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	5.18	4	2	2	3	3	3				2	5	5	5	5.6029	1.5382	2	1.4613E-72	2951	160511_QHF_FH_JSI11i_1	239.93	219.03			1.0211	1.0868	27.892	17	0	Median	1.3889	1.1515	8.181	2	0	Median	1.2195	1.4601	9.9348	5	0	Median	1.0211	0.99851	28.655	5	0	Median	0.71872	0.7571	7.5493	5	0	Median	8481900000	4082500000	4399400000	1698500000	729590000	968910000	2131800000	998770000	1133000000	2266100000	1070600000	1195500000	2385500000	1283500000	1102000000	44778	882	42150	271382;271383;271384;271385;271386;271387;271388;271389;271390;271391;271392;271393;271394;271395;271396;271397;271398	364006;364007;364008;364009;364010;364011;364012;364013;364014;364015;364016;364017;364018;364019;364020;364021;364022;364023;364024;364025;364026;364027;364028;364029;364030;364031;364032;364033;364034;364035;364036;364037	364007			32	
SEEEQSSSSVKK	2	Unmodified	1323.6154	0.61540349	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.68	10	2				2	3			2	6	6	3	5.1476	2.586	2;3	1.256E-53	2444	160511_QHF_FH_JSI9i_1	222.74	180.15			1.1051	1.1251	21.804	17	4	Median	1.4328	1.1477	1.5684	2	0	Median	1.3837	1.6327	19.331	6	2	Linear	1.111	1.0804	11.657	6	2	Median	1.0575	1.1148	26.98	3	0	Plateau	8044800000	3662600000	4382300000	1450500000	599880000	850580000	2591400000	1113200000	1478200000	2420600000	1061300000	1359300000	1582500000	888260000	694200000	44779	882	42151	271399;271400;271401;271402;271403;271404;271405;271406;271407;271408;271409;271410;271411;271412;271413;271414;271415	364038;364039;364040;364041;364042;364043;364044;364045;364046;364047;364048;364049;364050;364051;364052;364053;364054;364055;364056;364057;364058;364059;364060;364061	364058			23	
SEEERVTETQK	1	Unmodified	1334.6314	0.6313879	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								3	3	4	3	7.6927	7.3164	2;3	3.2233E-12	5313	160511_QHF_FH_JSI10i_2	157.97	105.49			0.93858	1.0006	22.023	13	4	Median	1.1665	1.0055	40.187	3	1	Median	0.87319	1.0293	4.6889	3	1	Median	1.177	1.143	14.141	4	1	Linear	0.8903	1.0006	11.939	3	1	Plateau	2820300000	1247300000	1573000000	582660000	208130000	374530000	656810000	362090000	294720000	952880000	359280000	593590000	627960000	317810000	310150000	44780	1426	42152	271416;271417;271418;271419;271420;271421;271422;271423;271424;271425;271426;271427;271428	364062;364063;364064;364065;364066;364067;364068;364069;364070;364071;364072;364073;364074;364075;364076;364077;364078;364079;364080;364081	364080			20	
SEEETSPLVTHQNPAGPVASAPELESK	1	Unmodified	2803.3512	0.35119688	1552	P43007	SLC1A4	Neutral amino acid transporter A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.22	56.568	3	1.4377E-58	50127	160511_QHF_FH_JSI9i_1	200	189.02			0.98475	0.97585	12.087	4	0	Median	1.2613	1.0425	NaN	1	0	Median	0.70587	0.81996	NaN	1	0	Median	1.0835	1.0602	NaN	1	0	Median	0.89499	0.91344	NaN	1	0	Median	329330000	157470000	171860000	85128000	33534000	51593000	71695000	38216000	33478000	84412000	42369000	42043000	88100000	43352000	44748000	44781	1552	42153	271429;271430;271431;271432	364082;364083;364084;364085;364086;364087;364088;364089;364090	364089			9	
SEEFSTSHMK	1	Unmodified	1181.5023	0.50228798	2868	Q56UN5	MAP3K19	Mitogen-activated protein kinase kinase kinase 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1					1	1	1	1	5.4103	3.2996	2	0.0019548	2660	160511_QHF_FH_JSI9i_1	75.213	48.829			0.13224	0.13003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13224	0.13003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60400000	60299000	101660	19566000	19566000	0	21466000	21466000	0	1153100	1051400	101660	18215000	18215000	0	44782	2868	42154	271433;271434;271435;271436	364091;364092;364093;364094	364094			4	
SEEGHPFK	1	Unmodified	929.4243	0.42429566	654	O95197	RTN3	Reticulon-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.87		5						2		1	1	3	2	7.6811	5.4431	2	0.00038441	4821	160511_QHF_FH_JSI12i_2	104.75	11.551			0.8903	0.86987	12.38	5	2	Median	1.0997	0.94232	NaN	1	0	Median	0.60944	0.75717	NaN	1	0	Median	0.87036	0.86184	1.3112	2	1	Median	0.92478	1.0573	NaN	1	1	Median	460570000	248260000	212310000	88809000	47110000	41698000	102580000	67587000	34989000	132850000	67602000	65245000	136340000	65957000	70382000	44783	654	42155	271437;271438;271439;271440;271441;271442;271443	364095;364096;364097;364098;364099;364100;364101;364102;364103	364096			9	
SEEIPKPSK	2	Unmodified	1013.5393	0.53932542	157	O00625	PIR	Pirin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								1	3	1	5	14.167	13.656	2;3	0.00019542	10774	160511_QHF_FH_JSI12i_2	101.64	75.041			1.1342	1.1409	61.19	8	4	Median	1.3404	1.1735	NaN	1	0	Median	1.2353	1.45	99.029	3	2	Plateau	1.1467	1.1237	NaN	1	0	Median	1.128	1.2544	25.047	3	2	Plateau	1190300000	790030000	400240000	36892000	18509000	18384000	610550000	471040000	139510000	187600000	95002000	92602000	355220000	205480000	149740000	44784	157	42156	271444;271445;271446;271447;271448;271449;271450;271451;271452;271453	364104;364105;364106;364107;364108;364109;364110;364111;364112;364113	364107			10	
SEEITTGSAWFSFLESHNK	1	Unmodified	2169.0015	0.0014631481	2632	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1		2	3	4	91.999	91.624	2;3	1.7589E-54	79245	160511_QHF_FH_JSI12i_3	217.88	203.6			0.99265	1.0176	20.073	7	5	Median	NaN	NaN	NaN	0	0	Median	0.67387	0.83111	9.1056	2	2	Median	1.0601	1.0176	18.961	3	2	Median	1.1324	1.177	18.879	2	1	Median	510770000	256790000	253980000	0	0	0	69872000	47248000	22624000	229970000	110820000	119150000	210930000	98722000	112210000	44785	2632	42157	271454;271455;271456;271457;271458;271459;271460;271461;271462	364114;364115;364116;364117;364118;364119;364120;364121;364122;364123;364124;364125	364121			12	
SEEKISDSEGFK	2	Acetyl (K)	1396.6358	0.63580458	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		43.693	34.436	2	5.6099E-05	19500	160513_QHF_FH_JSI11Kac_3	94.297	56.004			0.38552	0.37553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38552	0.37553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2967500	2274700	692860	0	0	0	0	0	0	2967500	2274700	692860	0	0	0	44786	1222	42158	271463	364126	364126	1094		1	
SEELNLPEGK	1	Unmodified	1114.5506	0.55061839	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	35.921	35.618	2	0.00083231	32272	160511_QHF_FH_JSI12i_1	76.228	45.666			1.1164	1.2046	12.08	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93265	1.106	NaN	1	0	Median	1.3364	1.3121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78279000	41456000	36823000	0	0	0	36528000	22276000	14252000	41751000	19180000	22571000	0	0	0	44787	3858	42159	271464;271465;271466	364127;364128	364127			1	
SEENEEPMETDQNAK	1	Oxidation (M)	1765.6949	0.69485237	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	3.75	4.76	6				2					3		2	3	12.386	9.9147	2	4.9151E-21	12567	160511_QHF_FH_JSI9i_1	140.24	121.62			1.1618	1.0733	32.944	7	1	Median	1.2559	1.0416	31.878	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9377	0.88366	27.494	2	0	Median	1.306	1.4149	44.326	3	0	Median	204680000	96980000	107700000	81381000	35796000	45585000	0	0	0	44241000	19929000	24312000	79054000	41255000	37799000	44788	1417	42160	271467;271468;271469;271470;271471;271472;271473;271474	364129;364130;364131;364132;364133;364134;364135;364136	364136		1077	8	
SEENEEPMETDQNAK	1	Unmodified	1749.6999	0.69993775	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					1	2	4	2	15.62	15.269	2;3	1.2322E-97	12889	160511_QHF_FH_JSI12i_1	253.79	220.57			0.88999	0.88714	25.788	8	2	Median	1.2562	1.0215	NaN	1	0	Median	1.0261	1.1969	37.979	2	0	Median	0.87716	0.84769	16.408	3	2	Median	0.88596	0.93026	18.566	2	0	Median	1435200000	690610000	744550000	292990000	111000000	181990000	339210000	161380000	177830000	423170000	213470000	209700000	379790000	204760000	175030000	44789	1417	42160	271475;271476;271477;271478;271479;271480;271481;271482;271483	364137;364138;364139;364140;364141;364142;364143;364144;364145;364146;364147;364148;364149;364150;364151;364152;364153	364144			17	
SEENEEPMETDQNAKEEEK	2	Oxidation (M)	2280.9176	0.91759468	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	14.302	13.862	3	4.1506E-24	14319	160511_QHF_FH_JSI12i_1	139.11	112.3			1.3198	1.1938	63.019	8	3	Median	1.259	1.0251	27.087	2	0	Median	2.4327	2.8541	53.986	2	2	Median	1.4972	1.4193	56.115	2	1	Median	0.77592	0.7968	51.644	2	0	Median	493140000	199550000	293590000	129830000	53723000	76108000	109220000	21772000	87451000	125630000	48323000	77305000	128450000	75731000	52722000	44790	1417	42161	271484;271485;271486;271487;271488;271489;271490;271491;271492	364154;364155;364156;364157;364158;364159;364160;364161;364162;364163;364164;364165;364166	364161		1077	13	
SEENEEPMETDQNAKEEEK	2	Unmodified	2264.9227	0.92268006	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	3	1	18.602	16.705	2;3	8.3824E-43	14034	160511_QHF_FH_JSI11i_1	206.64	203.8			1.27	1.2962	27.073	5	1	Median	1.1728	0.97408	NaN	1	0	Median	1.6102	1.9219	NaN	1	0	Median	1.1642	1.1528	16.584	2	1	Median	1.27	1.3634	NaN	1	0	Median	1263300000	551620000	711670000	360070000	179670000	180400000	225490000	64682000	160800000	298920000	124540000	174380000	378820000	182730000	196090000	44791	1417	42161	271493;271494;271495;271496;271497;271498;271499	364167;364168;364169;364170;364171;364172;364173;364174;364175;364176;364177;364178;364179	364169			13	
SEEPAGQILSHLSSELK	1	Unmodified	1823.9265	0.92650729	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							2	3	3	2	82.546	81.903	2;3	8.2937E-33	72776	160511_QHF_FH_JSI10i_2	154.07	131.19			0.97663	1.0363	27.273	8	4	Median	0.87269	0.76657	37.121	2	1	Median	0.74127	0.89495	23.411	2	1	Median	1.1546	1.1605	18.694	2	1	Median	1.1065	1.1865	16.102	2	1	Median	840650000	425850000	414810000	146370000	69609000	76756000	224490000	130950000	93539000	183090000	99403000	83683000	286710000	125880000	160830000	44792	5474	42162	271500;271501;271502;271503;271504;271505;271506;271507;271508;271509	364180;364181;364182;364183;364184;364185;364186;364187;364188;364189;364190;364191;364192	364191			13	
SEEPDSITK	1	Unmodified	1004.4662	0.46622005	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.6	5.64	3				1	1				1		2	2	15.182	12.945	2	6.3471E-05	10784	160511_QHF_FH_JSI9i_1	96.948	59.389			0.55294	0.53993	21.109	4	0	Median	0.68004	0.562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55294	0.53993	3.4435	2	0	Median	0.35024	0.36003	NaN	1	0	Median	374740000	243830000	130920000	153320000	83815000	69501000	0	0	0	125030000	85993000	39033000	96401000	74019000	22382000	44793	1685	42163	271510;271511;271512;271513;271514	364193;364194;364195;364196;364197	364196			5	
SEEPEVPDQEGLQR	0	Unmodified	1611.7376	0.73764389	4683	Q9H2V7	SPNS1	Protein spinster homolog 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	36.765	36.288	2	1.5979E-14	32836	160511_QHF_FH_JSI12i_1	155.98	144.81			1.0559	1.1893	0.99971	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98458	1.1809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1324	1.1977	NaN	1	0	Median	138030000	70417000	67611000	0	0	0	78284000	41933000	36352000	0	0	0	59744000	28485000	31260000	44794	4683	42164	271515;271516	364198;364199;364200	364199			3	
SEEQAMK	1	Unmodified	821.35892	0.35891821	3449	Q8IXT5	RBM12B	RNA-binding protein 12B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.4081	5.0664	2	0.01409	3056	160511_QHF_FH_JSI12i_1	58.167	22.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44795	3449	42165	271517	364201	364201			1	
SEEQLKEEGIEYK	2	Acetyl (K)	1622.7675	0.76754703	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.452					2	5					3	1	3	57.79	48.412	2;3	7.1768E-12	21767	160513_QHF_FH_JSI12Kac_2	122.42	107.16			0.89231	1.0558	15.234	5	0	Median	NaN	NaN	NaN	0	0	Median	0.80483	0.95245	14.574	2	0	Median	0.82751	0.84301	NaN	1	0	Median	1.057	1.1466	1.5691	2	0	Median	42137000	23381000	18755000	0	0	0	15100000	8454500	6645000	6123300	3734800	2388400	20914000	11192000	9722000	44796	935	42166	271518;271519;271520;271521;271522;271523;271524	364202;364203;364204;364205;364206;364207;364208;364209;364210;364211;364212	364211	692		11	
SEEQPMDLENR	0	Unmodified	1346.5772	0.57724384	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.26	27.671	2	1.9135E-05	24783	160511_QHF_FH_JSI12i_1	103.55	86.875			1.2314	1.1002	25.711	4	1	Median	1.3182	1.0837	NaN	1	0	Median	1.466	1.6499	NaN	1	0	Median	1.1503	1.117	NaN	1	1	Median	0.87289	0.89341	NaN	1	0	Median	117750000	52249000	65502000	22133000	11061000	11073000	34159000	12062000	22097000	34875000	14523000	20352000	26583000	14603000	11980000	44797	4253	42167	271525;271526;271527;271528	364213;364214;364215;364216;364217;364218;364219	364215			7	
SEERAEVAESK	1	Unmodified	1233.5837	0.58370943	886	P07951	TPM2	Tropomyosin beta chain	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		6.5645	6.2411	3	0.0049032	3996	160511_QHF_FH_JSI11i_2	40.025	22.999			0.45784	0.50548	19.053	2	1	Median	NaN	NaN	NaN	0	0	Median	0.35542	0.44177	NaN	1	1	Median	0.58976	0.57838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63604000	39939000	23665000	0	0	0	21964000	17237000	4726700	41640000	22702000	18938000	0	0	0	44798	886	42168	271529;271530	364220;364221	364220			2	
SEERAEVAESR	0	Unmodified	1261.5899	0.58985744	73	CON__Q3SX28			yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	6.7125	6.4227	2;3	1.6042E-07	4276	160511_QHF_FH_JSI9i_2	102.87	88.186		+	1.0294	1.0596	12.69	11	0	Median	1.1321	0.95881	2.3054	2	0	Median	0.68412	0.84625	9.1324	2	0	Median	1.1633	1.099	8.4437	3	0	Median	1.0201	1.1223	5.0586	4	0	Median	1210400000	589740000	620680000	206630000	87492000	119140000	260580000	149410000	111170000	422470000	190240000	232240000	320730000	162600000	158130000	44799	73	42169	271531;271532;271533;271534;271535;271536;271537;271538;271539;271540;271541	364222;364223;364224;364225;364226;364227;364228;364229;364230;364231;364232;364233;364234;364235	364227			14	
SEESSHYSTEK	1	Unmodified	1282.5313	0.53133951	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.04	7	8					2			3	4	5	5	5.5127	4.3159	2;3	3.2248E-30	3162	160511_QHF_FH_JSI10i_1	195.36	146.56			0.97822	0.93268	19.982	17	1	Median	1.3192	1.1247	12.67	3	0	Plateau	0.71443	0.86523	10.823	4	0	Median	1.0761	1.0161	20.626	5	0	Median	0.87849	0.90133	26.256	5	1	Median	1679800000	860750000	819050000	245360000	122440000	122920000	512360000	304210000	208150000	503260000	230070000	273190000	418820000	204040000	214790000	44800	1857	42170	271542;271543;271544;271545;271546;271547;271548;271549;271550;271551;271552;271553;271554;271555;271556;271557;271558	364236;364237;364238;364239;364240;364241;364242;364243;364244;364245;364246;364247;364248;364249;364250;364251;364252;364253	364241			18	
SEESVSR	0	Unmodified	792.36136	0.36136105	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.5844	4.2704	2	0.0034852	2250	160511_QHF_FH_JSI12i_1	104.21	28.174			0.95203	0.9989	4.5841	4	0	Median	1.2704	1.0197	NaN	1	0	Median	0.86802	1.0543	NaN	1	0	Median	0.9688	0.94974	NaN	1	0	Median	0.93555	0.97855	NaN	1	0	Median	772580000	411020000	361560000	13027000	4680500	8346100	274280000	152820000	121460000	247260000	132220000	115030000	238020000	121300000	116720000	44801	2252	42171	271559;271560;271561;271562	364254;364255;364256;364257;364258	364256			5	
SEESVSRLPEEIR	0	Unmodified	1529.7686	0.76855009	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.615	2	8	3							2	3	4	4	39.832	39.12	2;3	4.1641E-05	33615	160511_QHF_FH_JSI11i_2	94.09	72.789			1.032	1.048	8.3115	12	0	Median	1.3198	1.1197	0.43076	2	0	Median	0.78608	0.95344	2.3145	3	0	Plateau	1.0823	1.0964	5.8659	4	0	Median	1.0134	1.0006	6.7305	3	0	Plateau	1487100000	680100000	807020000	264860000	104470000	160390000	322360000	173830000	148530000	520300000	225000000	295300000	379610000	176800000	202810000	44802	2252	42172	271563;271564;271565;271566;271567;271568;271569;271570;271571;271572;271573;271574;271575	364259;364260;364261;364262;364263;364264;364265;364266;364267;364268;364269;364270;364271;364272;364273;364274	364266			15	
SEETLDEGPPK	1	Unmodified	1200.551	0.55101232	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	25.908	21.073	2	3.7301E-73	18008	160511_QHF_FH_JSI9i_1	250.12	218.75			1.0421	1.036	13.851	10	0	Median	1.2779	1.052	NaN	1	0	Median	0.81743	0.96758	13.624	3	0	Median	1.0381	1.0013	1.5515	3	0	Median	1.046	1.0889	14.551	3	0	Plateau	2140200000	1144200000	996030000	579060000	274650000	304420000	468320000	259230000	209090000	513220000	302830000	210390000	579620000	307480000	272140000	44803	2158	42173	271576;271577;271578;271579;271580;271581;271582;271583;271584;271585	364275;364276;364277;364278;364279;364280;364281;364282;364283;364284;364285;364286;364287;364288;364289;364290;364291;364292;364293;364294;364295;364296;364297	364292			23	
SEETLDEGPPKYTK	2	Acetyl (K)	1634.7675	0.76754703	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	47.835	38.646	2	0.00038769	21420	160513_QHF_FH_JSI11Kac_3	89.548	64.756			0.30898	0.30303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30898	0.30303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5842100	4772700	1069400	0	0	0	0	0	0	5060200	3990700	1069400	781970	781970	0	44804	2158	42174	271586;271587	364298;364299;364300	364298	2265		3	
SEETNQQEVANSLAK	1	Unmodified	1646.7748	0.77475768	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.33	29.731	2	1.317E-29	25950	160511_QHF_FH_JSI9i_1	212.59	180.74			0.80661	0.78108	11.614	4	0	Median	0.90943	0.7345	NaN	1	0	Median	0.70768	0.83062	NaN	1	0	Median	0.98017	0.93474	NaN	1	0	Median	0.71541	0.73307	NaN	1	0	Median	173530000	95163000	78369000	41935000	21417000	20517000	47138000	28037000	19101000	29841000	15525000	14316000	54619000	30184000	24435000	44805	486	42175	271588;271589;271590;271591	364301;364302;364303;364304;364305;364306;364307;364308	364307			8	
SEETVSGLK	1	Unmodified	948.47639	0.47639081	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.478	16.202	2	0.0033871	13909	160511_QHF_FH_JSI12i_1	70.816	46.861			0.9513	0.99252	13.14	3	3	Median	NaN	NaN	NaN	0	0	Median	0.9521	1.1125	NaN	1	1	Median	0.90048	0.85599	NaN	1	1	Median	0.9513	0.99252	NaN	1	1	Median	245470000	141270000	104190000	0	0	0	97306000	53899000	43407000	72324000	38703000	33622000	75838000	48673000	27165000	44806	2297	42176	271592;271593;271594	364309;364310;364311	364310			3	
SEEVFDEWVSK	1	Unmodified	1353.6089	0.60886155	4725	Q9H4L5	OSBPL3	Oxysterol-binding protein-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			66.222	65.889	2	0.0021076	58653	160511_QHF_FH_JSI9i_1	63.32	34.362			0.7114	0.84205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7114	0.84205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16095000	10643000	5452100	0	0	0	16095000	10643000	5452100	0	0	0	0	0	0	44807	4725	42177	271595;271596	364312;364313	364313			2	
SEEWADNHLPLTDAELAR	0	Unmodified	2065.9705	0.97049737	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.426	1	9	1							1	2	4	4	69.582	68.775	2;3	2.2451E-07	60820	160511_QHF_FH_JSI10i_2	141.46	135.97			0.98961	1.0492	16.647	11	3	Median	1.3415	1.1786	NaN	1	1	Median	0.80127	0.9877	5.6746	2	0	Median	1.0215	1.3582	24.972	4	1	Linear	0.98859	1.0801	7.3954	4	1	Median	1365900000	703900000	661980000	17070000	7315500	9754900	352470000	196530000	155940000	594800000	301670000	293120000	401540000	198380000	203160000	44808	434	42178	271597;271598;271599;271600;271601;271602;271603;271604;271605;271606;271607	364314;364315;364316;364317;364318;364319;364320;364321;364322;364323;364324;364325;364326;364327;364328;364329;364330;364331;364332	364332			19	
SEFDGDLQSQLLSK	1	Unmodified	1565.7573	0.7573167	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	67.348	66.735	2	0.0041132	60786	160511_QHF_FH_JSI12i_1	55.578	21.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44809	545	42179	271608	364333	364333			1	
SEFEQNLSEK	1	Unmodified	1209.5513	0.55134667	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.57	5	1					2			1	3	1	3	28.617	25.798	2	1.2656E-06	23086	160511_QHF_FH_JSI12i_1	128.27	108.48			0.90005	0.60561	36.156	8	6	Linear	0.85796	0.71058	NaN	1	1	Median	0.47604	1.2457	50.049	3	2	Plateau	0.55345	0.53332	NaN	1	1	Median	0.9442	0.79963	26.671	3	2	Plateau	3359100000	2127700000	1231500000	508630000	292160000	216470000	930360000	663550000	266810000	929260000	616700000	312560000	990870000	555240000	435630000	44810	2780	42180	271609;271610;271611;271612;271613;271614;271615;271616	364334;364335;364336;364337;364338;364339;364340;364341;364342	364335			9	
SEFQAIIPAVNSHIQSDLLR	0	Unmodified	2237.1804	0.18043057	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.457	91.97	3	0.0043815	80867	160511_QHF_FH_JSI11i_2	42.123	33.027			1.0224	1.0459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0224	1.0459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20843000	13413000	7430400	0	0	0	0	0	0	20843000	13413000	7430400	0	0	0	44811	1176	42181	271617	364343	364343			1	
SEFVILRDEK	1	Unmodified	1234.6558	0.65575216	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	43.233	42.613	2;3	1.9331E-13	36106	160511_QHF_FH_JSI12i_3	163.64	123.29			0.93897	1.1833	12.983	11	0	Linear	1.1396	0.9588	24.245	2	0	Median	0.84021	1.0318	12.633	2	0	Median	1.0928	0.95639	12.191	4	0	Linear	0.97015	0.99163	13.746	3	0	Plateau	1927200000	1014900000	912320000	231160000	103930000	127240000	489630000	298930000	190710000	769090000	395160000	373930000	437330000	216880000	220450000	44812	1823	42182	271618;271619;271620;271621;271622;271623;271624;271625;271626;271627;271628	364344;364345;364346;364347;364348;364349;364350;364351;364352;364353;364354;364355;364356;364357;364358;364359;364360;364361;364362;364363;364364	364362			21	
SEFYANEACK	1	Unmodified	1217.5023	0.50228798	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0			By MS/MS		14	0							1					1		31.546	22.425	2	0.027406	14260	160513_QHF_FH_JSI11Kac_4	47.823	41.233			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44813	3313	42183	271629	364365	364365			1	
SEGALELADVSNELPGLK	1	Unmodified	1840.9418	0.941823	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.61	10	3	1							5	3	2	4	90.756	90.295	2;3	1.1139E-159	82060	160511_QHF_FH_JSI10i_1	365.11	284.13			0.93751	0.93779	12.085	12	4	Median	1.0517	0.85694	15.004	3	1	Median	0.77398	0.94123	5.6376	3	0	Median	0.93751	0.91228	0.15711	2	0	Median	0.95627	1.0147	17.453	4	3	Median	1714400000	877490000	836890000	234190000	110870000	123320000	465420000	258780000	206640000	569500000	284900000	284600000	445260000	222930000	222330000	44814	2282	42184	271630;271631;271632;271633;271634;271635;271636;271637;271638;271639;271640;271641;271642;271643	364366;364367;364368;364369;364370;364371;364372;364373;364374;364375;364376;364377;364378;364379;364380;364381;364382;364383;364384;364385;364386;364387;364388;364389;364390;364391;364392;364393;364394;364395;364396	364381			31	
SEGDGTQDIVDK	1	Unmodified	1262.5626	0.56263964	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	20.246	19.608	2	2.4384E-05	16505	160511_QHF_FH_JSI9i_1	133.05	88.603			1.0424	1.026	23.968	5	2	Median	0.99334	0.82719	33.81	2	2	Median	1.0424	1.2364	NaN	1	0	Median	1.0724	1.0241	NaN	1	0	Median	0.97943	1.026	NaN	1	0	Median	257440000	121270000	136170000	74305000	32830000	41475000	55599000	27297000	28303000	48834000	21871000	26963000	78703000	39275000	39428000	44815	2977	42185	271644;271645;271646;271647;271648	364397;364398;364399;364400;364401;364402;364403;364404	364403			8	
SEGDSVGESVHGK	1	Acetyl (Protein N-term)	1328.5844	0.58443771	270	O15258	RER1	Protein RER1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									3	1	1	1	15.564	15.106	2	9.9785E-10	12396	160511_QHF_FH_JSI9i_1	103.34	93.11			0.058066	0.052635	155.21	4	3	Median	0.068399	0.055837	NaN	1	1	Median	0.80434	0.91099	NaN	1	0	Median	0.029756	0.028914	NaN	1	1	Median	0.049294	0.049617	NaN	1	1	Median	79667000	65732000	13936000	16045000	15792000	252310	30981000	18855000	12126000	15134000	14906000	228500	17507000	16178000	1328900	44816	270	42186	271649;271650;271651;271652;271653;271654	364405;364406;364407;364408;364409;364410	364410			6	
SEGDSVGESVHGKPSVVYR	1	Acetyl (Protein N-term)	2029.9705	0.97049737	270	O15258	RER1	Protein RER1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	4	2	36.11	35.415	2;3	6.2682E-25	30130	160511_QHF_FH_JSI12i_3	117.26	106.21			1.0604	1.1244	134.02	8	2	Median	1.4888	1.2825	222.49	3	2	Median	0.89634	1.0883	NaN	1	0	Median	1.1091	1.0833	9.8721	2	0	Median	1.0093	1.0936	11.961	2	0	Median	1029800000	443060000	586700000	271750000	87746000	184000000	202510000	107620000	94897000	390320000	178910000	211410000	165180000	68788000	96393000	44817	270	42187	271655;271656;271657;271658;271659;271660;271661;271662;271663;271664;271665	364411;364412;364413;364414;364415;364416;364417;364418;364419;364420;364421;364422;364423;364424;364425;364426;364427	364427			17	
SEGDSVGESVHGKPSVVYR	1	Unmodified	1987.9599	0.95993268	270	O15258	RER1	Protein RER1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		27.009	27.009	3;4	0.00012002	23232	160511_QHF_FH_JSI11i_3	79.511	68.136			0.87601	0.81841	7.7258	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87601	0.81841	7.7258	2	2	Median	NaN	NaN	NaN	0	0	Median	95825000	50550000	45274000	0	0	0	0	0	0	95825000	50550000	45274000	0	0	0	44818	270	42187	271666;271667	364428;364429	364429			2	
SEGEGEAASADDGSLNTSGAGPK	1	Unmodified	2105.8985	0.89851422	5076	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	26.572	25.925	2;3	4.1894E-213	22863	160511_QHF_FH_JSI10i_1	327.97	314.99			1.0234	1.1624	21.888	9	3	Median	1.7093	1.4209	36.284	3	2	Median	0.8979	1.0641	12.493	2	1	Median	1.1001	1.0684	20.692	2	0	Median	1.1332	1.1862	12.886	2	0	Median	503400000	246360000	257040000	137790000	57363000	80423000	152110000	82314000	69801000	104660000	52110000	52552000	108840000	54573000	54266000	44819	5076	42188	271668;271669;271670;271671;271672;271673;271674;271675;271676	364430;364431;364432;364433;364434;364435;364436;364437;364438;364439;364440;364441;364442;364443;364444;364445;364446	364440			17	
SEGEIAR	0	Unmodified	760.37153	0.37153181	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5.29	4	2				1	1			1	2	4	1	6.5513	4.4458	2	0.0035003	3986	160511_QHF_FH_JSI12i_1	104.11	32.162			0.97287	1.0309	71.202	8	2	Median	1.2575	1.0432	NaN	1	0	Median	0.84953	1.011	8.3866	2	0	Median	1.3432	1.3222	97.046	4	2	Median	0.85093	0.91265	NaN	1	0	Median	6844400000	3187700000	3656700000	1611700000	706370000	905330000	1813700000	924810000	888910000	1742700000	717180000	1025500000	1676300000	839380000	836960000	44820	1702	42189	271677;271678;271679;271680;271681;271682;271683;271684	364447;364448;364449;364450;364451;364452;364453;364454	364448			8	
SEGETIMSSSMGK	1	Unmodified	1342.5745	0.57446665	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	5.84	6	1				3	1			2	4	3	2	37.046	32.539	2	1.2982E-41	29254	160511_QHF_FH_JSI12i_1	209.97	185.19			1.0373	1.103	14.255	9	2	Median	1.3142	1.0707	32.448	2	1	Median	0.90486	1.0738	7.5047	2	0	Median	1.117	1.103	9.9198	3	1	Plateau	0.93293	0.99804	1.0754	2	0	Median	1763500000	730120000	1033300000	580910000	238430000	342480000	418570000	176460000	242110000	456630000	172680000	283950000	307350000	142550000	164800000	44821	1620	42190	271685;271686;271687;271688;271689;271690;271691;271692;271693;271694;271695	364455;364456;364457;364458;364459;364460;364461;364462;364463;364464;364465;364466;364467;364468;364469;364470;364471	364458			17	
SEGETIMSSSMGK	1	Oxidation (M)	1358.5694	0.56938127	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	5									3			2	33.396	32.48	2	2.0284E-06	28610	160511_QHF_FH_JSI9i_1	89.548	64.162			1.9264	1.78	19.614	2	0	Median	1.9001	1.5495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9531	2.0448	NaN	1	0	Median	132010000	50557000	81458000	81311000	32655000	48656000	0	0	0	0	0	0	50704000	17902000	32801000	44822	1620	42190	271696;271697;271698;271699;271700	364472;364473;364474;364475	364475		1295;1296	4	
SEGETIMSSSMGK	1	2 Oxidation (M)	1374.5643	0.56429589	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	2	0	By MS/MS		By MS/MS		7	6	1					1				1		1		23.555	19.255	2	0.0071455	28447	160511_QHF_FH_JSI9i_1	103.21	87.598			0.69928	0.62155	87.789	2	1	Median	0.40461	0.3341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2086	1.1563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	220150000	166160000	53989000	217410000	164880000	52537000	0	0	0	2740600	1288000	1452600	0	0	0	44823	1620	42190	271701;271702	364476;364477	364477		1295;1296	2	
SEGFDTYR	0	Unmodified	973.41412	0.4141249	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.75	4	4	3			2	3	1		3	4	5	5	24.345	21.208	2	2.9437E-16	12725	160513_QHF_FH_JSI12Kac_4	167.9	130.26			0.97598	0.98862	7.3224	16	0	Median	1.1959	0.97133	6.0309	3	0	Plateau	0.8325	0.98517	6.5504	4	0	Median	1.005	0.9911	9.8059	5	0	Median	1.0044	1.089	7.767	4	0	Linear	5420800000	2661600000	2759200000	971220000	423060000	548160000	1345100000	766740000	578350000	1651100000	769320000	881780000	1453400000	702530000	750870000	44824	1010	42191	271703;271704;271705;271706;271707;271708;271709;271710;271711;271712;271713;271714;271715;271716;271717;271718;271719	364478;364479;364480;364481;364482;364483;364484;364485;364486;364487;364488;364489;364490;364491;364492;364493;364494;364495;364496;364497;364498;364499;364500;364501;364502;364503;364504;364505	364502			28	
SEGGEDYTGATVIEPLK	1	Unmodified	1764.8418	0.84177461	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	59.515	58.973	2	1.1516E-08	53520	160511_QHF_FH_JSI12i_1	133.71	109.33			1.2448	1.2473	5.7327	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3155	1.2989	NaN	1	1	Median	1.1778	1.1977	NaN	1	1	Median	175100000	79167000	95930000	0	0	0	0	0	0	92448000	42736000	49712000	82650000	36432000	46218000	44825	1307	42192	271720;271721	364506;364507	364507			2	
SEGGFIWACK	1	Unmodified	1153.5226	0.5226295	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.83	6.84		3						1	2	1	2	2	1	59.191	53.916	2	6.9071E-06	46502	160511_QHF_FH_JSI11i_2	107.57	78.488			1.2622	1.206	20.303	6	2	Median	1.321	1.1479	NaN	1	0	Median	1.0742	1.2749	16.847	2	2	Median	1.0983	1.085	21.938	2	0	Median	1.4532	1.6638	NaN	1	0	Median	443730000	204580000	239150000	58108000	28263000	29845000	10899000	5406100	5493300	238530000	114710000	123820000	136180000	56194000	79991000	44826	576	42193	271722;271723;271724;271725;271726;271727	364508;364509;364510;364511;364512	364510			4	
SEGKCFSVLGFCK	2	Acetyl (K)	1559.7112	0.7112349	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		79.637	69.05	2	0.00014814	36668	160513_QHF_FH_JSI11Kac_5	101.95	85.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2332100	2332100	0	0	0	0	0	0	0	2332100	2332100	0	0	0	0	44827	1024	42194	271728	364513	364513	846		1	
SEGLSMAQHPGLSSGPEK	1	Unmodified	1810.852	0.85196214	3058	Q6IN84	MRM1	rRNA methyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	37.713	36.918	3	3.8085E-05	31411	160511_QHF_FH_JSI12i_2	70.334	62.158			0.91982	0.92125	11.785	5	0	Linear	1.278	1.1157	NaN	1	0	Median	0.84745	1.0485	NaN	1	0	Median	0.91835	0.9147	NaN	1	0	Median	1.0997	1.1525	13.342	2	0	Median	200870000	98301000	102570000	33569000	15214000	18355000	47747000	24576000	23170000	51846000	24192000	27654000	67711000	34319000	33392000	44828	3058	42195	271729;271730;271731;271732;271733	364514	364514			1	
SEGSEYEEIPK	1	Unmodified	1266.5616	0.561577	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.352	29.754	2	1.8366E-13	26458	160511_QHF_FH_JSI10i_1	152.28	122.8			0.85941	0.85016	16.462	4	0	Median	1.1009	0.93963	NaN	1	0	Median	0.59166	0.67305	NaN	1	0	Median	0.80247	0.76921	NaN	1	0	Median	0.92039	0.94364	NaN	1	0	Median	120430000	60017000	60414000	31701000	16630000	15071000	25239000	14764000	10475000	32284000	16090000	16194000	31206000	12532000	18674000	44829	1628	42196	271734;271735;271736;271737	364515;364516;364517;364518;364519;364520;364521	364519			7	
SEGSMSTDKR	1	Unmodified	1096.4819	0.48188689	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		4.8946	4.7005	2	3.2168E-05	2465	160511_QHF_FH_JSI11i_2	110.88	71.92			0.83122	0.86128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83122	0.86128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35718000	17819000	17898000	0	0	0	0	0	0	35718000	17819000	17898000	0	0	0	44830	5066	42197	271738	364522	364522			1	
SEGSPLVVLPYMK	1	Unmodified	1418.7479	0.74793799	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.805	81.336	2	3.8064E-05	73994	160511_QHF_FH_JSI11i_1	115.78	90.396			0.75413	0.7552	15.412	4	1	Median	1.0535	0.84145	NaN	1	1	Median	0.78543	0.9166	NaN	1	0	Median	0.72408	0.67779	NaN	1	0	Median	0.64689	0.67651	NaN	1	0	Median	172220000	110930000	61289000	25098000	15094000	10003000	47924000	26751000	21172000	50582000	36621000	13960000	48613000	32460000	16153000	44831	907	42198	271739;271740;271741;271742	364523;364524;364525;364526;364527;364528;364529	364524			7	
SEGTTSTSYK	1	Unmodified	1059.472	0.47203371	4579	Q9C0B5	ZDHHC5	Palmitoyltransferase ZDHHC5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	7.0686	6.658	2	0.00045126	4560	160511_QHF_FH_JSI12i_1	74.173	41.818			0.96692	0.99359	19.962	3	2	Median	1.4263	1.2177	NaN	1	1	Median	0.70564	0.81686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96692	0.99359	NaN	1	0	Median	114920000	58590000	56327000	28310000	10005000	18305000	39049000	23420000	15629000	0	0	0	47559000	25165000	22394000	44832	4579	42199	271743;271744;271745;271746	364530;364531;364532;364533	364530			4	
SEGTYLNSVIESHTEFIFTTIK	1	Unmodified	2515.2482	0.24823536	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	1	2	3	94.863	88.711	3	1.1356E-168	46812	160513_QHF_FH_JSI11Kac_6	276.36	245.39			0.98216	0.96605	24.947	7	3	Median	1.1396	0.96605	NaN	1	0	Median	0.72089	0.86265	NaN	1	0	Median	1.4191	1.389	29.632	2	0	Median	0.76005	0.80827	15.596	3	3	Plateau	1010900000	502210000	508670000	97229000	40625000	56605000	125080000	79689000	45392000	314850000	126260000	188580000	473720000	255630000	218090000	44833	1520	42200	271747;271748;271749;271750;271751;271752;271753	364534;364535;364536;364537;364538;364539;364540;364541;364542	364535			9	
SEGVVAVLLTK	1	Unmodified	1114.6598	0.6597749	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.07	3	4	4	1	1	1	4	9	4	7	12	6	6	74.718	67.917	2	7.3928E-20	35397	160513_QHF_FH_JSI9Kac_5	166.55	110.54			0.9454	0.97949	14.471	30	2	Median	1.1627	0.98054	11.423	7	1	Median	0.8764	1.0312	13.089	11	1	Median	0.93091	0.90247	20.586	6	0	Median	0.89587	0.94772	9.8095	6	0	Median	5444800000	2784700000	2660100000	967460000	437850000	529610000	1644000000	839510000	804500000	1651900000	912990000	738940000	1181400000	594320000	587060000	44834	1650	42201	271754;271755;271756;271757;271758;271759;271760;271761;271762;271763;271764;271765;271766;271767;271768;271769;271770;271771;271772;271773;271774;271775;271776;271777;271778;271779;271780;271781;271782;271783;271784	364543;364544;364545;364546;364547;364548;364549;364550;364551;364552;364553;364554;364555;364556;364557;364558;364559;364560;364561;364562;364563;364564;364565;364566;364567;364568;364569;364570;364571;364572;364573;364574;364575;364576;364577;364578;364579;364580;364581;364582;364583;364584;364585;364586;364587;364588;364589;364590;364591;364592;364593;364594;364595;364596;364597;364598;364599;364600;364601;364602	364554			59	
SEGWWTLLTSVLTTALK	1	Unmodified	1905.0248	0.024764773	3256	Q7Z392	TRAPPC11	Trafficking protein particle complex subunit 11	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.72	97.995	3	1.8961E-11	58026	160513_QHF_FH_JSI10Kac_6	124.25	95.618			1.2159	1.4358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2159	1.4358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78850000	39669000	39181000	0	0	0	78850000	39669000	39181000	0	0	0	0	0	0	44835	3256	42202	271785	364603	364603			1	
SEGYFGMYR	0	Unmodified	1108.4648	0.46478027	4796	Q9H936	SLC25A22	Mitochondrial glutamate carrier 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	46.056	45.103	2	0.00092686	39689	160511_QHF_FH_JSI10i_2	71.501	62.969			0.87007	0.98603	2.0896	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82124	0.99222	NaN	1	0	Median	0.95065	0.95435	NaN	1	0	Median	0.87007	0.98603	NaN	1	0	Median	180730000	96086000	84643000	0	0	0	57251000	31015000	26236000	72605000	35495000	37110000	50873000	29576000	21297000	44836	4796	42203	271786;271787;271788	364604;364605;364606;364607	364607			4	
SEHDVLFQVTQFPSR	0	Unmodified	1788.8795	0.87949752	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.81	69.513	3	0.036169	59963	160511_QHF_FH_JSI12i_2	35.091	30.623			1.3629	1.5172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3629	1.5172	NaN	1	0	Median	20356000	8144500	12211000	0	0	0	0	0	0	0	0	0	20356000	8144500	12211000	44837	3146	42204	271789	364608	364608			0	
SEHLSVRPQTALEENETQK	1	Unmodified	2195.0818	0.081838734	5591	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			34.464	33.043	3	0.0012795	27594	160511_QHF_FH_JSI10i_3	51.193	42.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44838	5591	42205	271790	364609	364609			1	
SEHPGLSIGDTAK	1	Unmodified	1310.6466	0.64664404	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.04	6.34	1	8	4				2	8	1	6	6	6	6	29.646	24.832	2;3	1.5916E-05	20587	160511_QHF_FH_JSI11i_2	142.07	103.98			0.936	0.91343	20.386	24	0	Median	1.0913	0.91638	7.1898	6	0	Median	0.80839	0.95595	14.654	6	0	Median	0.92419	0.90274	6.3988	6	0	Median	1.6193	1.7345	36.225	6	0	Linear	4345300000	2178000000	2167300000	815130000	416670000	398460000	1076700000	583610000	493080000	1693500000	817400000	876130000	759970000	360330000	399640000	44839	1280	42206	271791;271792;271793;271794;271795;271796;271797;271798;271799;271800;271801;271802;271803;271804;271805;271806;271807;271808;271809;271810;271811;271812;271813;271814	364610;364611;364612;364613;364614;364615;364616;364617;364618;364619;364620;364621;364622;364623;364624;364625;364626;364627;364628;364629;364630;364631;364632;364633;364634;364635;364636;364637	364626			28	
SEHPPLCGR	0	Unmodified	1051.4869	0.48691269	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	9.334	9.3828	2	0.00093529	7044	160511_QHF_FH_JSI11i_3	71.342	61.948			1.3096	1.2824	32.098	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1223	1.022	NaN	1	0	Median	1.5283	1.6092	NaN	1	0	Median	61095000	31468000	29627000	0	0	0	0	0	0	39351000	22673000	16678000	21744000	8795300	12949000	44840	2665	42207	271815;271816	364638;364639;364640	364638			3	
SEHSLFQAK	1	Unmodified	1045.5193	0.51925868	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	16.928	16.967	2	0.010185	13644	160511_QHF_FH_JSI12i_3	50.607	27.587			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44841	3643	42208	271817	364641	364641			1	
SEHTQTVSQLTSQNEVLR	0	Unmodified	2056.0185	0.018510196	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			41.313	40.347	3	0.0013219	35551	160511_QHF_FH_JSI10i_2	52.185	42.77			0.77923	0.94667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77923	0.94667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21031000	13000000	8031600	0	0	0	21031000	13000000	8031600	0	0	0	0	0	0	44842	3423	42209	271818	364642	364642			1	
SEHVEPAAPGPGPNGGGGGPAPAR	0	Acetyl (Protein N-term)	2177.025	0.024992557	2843	Q4ZIN3	TMEM259	Membralin	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	34.218	33.637	2	3.0336E-05	30425	160511_QHF_FH_JSI12i_1	75.462	63.848			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44843	2843	42210	271819;271820	364643;364644	364643			2	
SEIDLFNIR	0	Unmodified	1105.5768	0.57677356	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.29	3	4	2				2	4		3	5	3	4	77.777	73.098	2	1.0148E-66	66220	160511_QHF_FH_JSI9i_2	240.09	206.29			0.87026	0.89695	13.841	15	1	Median	1.2104	1.029	1.8498	3	0	Plateau	0.73146	0.87233	10.543	5	0	Median	0.8763	0.89497	1.589	3	0	Plateau	1.0164	1.1145	22.67	4	1	Linear	1880500000	978720000	901770000	350880000	162530000	188350000	500430000	275770000	224660000	670740000	344190000	326550000	358440000	196240000	162200000	44844	916	42211	271821;271822;271823;271824;271825;271826;271827;271828;271829;271830;271831;271832;271833;271834;271835	364645;364646;364647;364648;364649;364650;364651;364652;364653;364654;364655;364656;364657;364658;364659;364660;364661;364662;364663;364664;364665;364666;364667;364668;364669	364657			25	
SEIDLFNIRK	1	Unmodified	1233.6717	0.67173657	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.12		8	7					3	4	5	6	5	6	64.248	60.622	2;3	9.1131E-20	53639	160511_QHF_FH_JSI10i_2	178.22	153.37			1.0257	1.0371	11.21	22	3	Median	1.1782	0.99281	8.2972	5	1	Median	0.89126	1.0625	13.549	6	0	Median	1.0344	1.0235	6.5364	5	1	Median	0.9776	1.0165	15.554	6	1	Median	13801000000	6488900000	7312200000	1407900000	522660000	885210000	2196600000	1211400000	985230000	4969200000	2130700000	2838500000	5227400000	2624200000	2603300000	44845	916	42212	271836;271837;271838;271839;271840;271841;271842;271843;271844;271845;271846;271847;271848;271849;271850;271851;271852;271853;271854;271855;271856;271857	364670;364671;364672;364673;364674;364675;364676;364677;364678;364679;364680;364681;364682;364683;364684;364685;364686;364687;364688;364689;364690;364691;364692;364693;364694;364695;364696;364697;364698;364699;364700;364701;364702;364703;364704;364705;364706;364707;364708;364709;364710;364711;364712;364713	364699			44	
SEIDLLDIR	0	Unmodified	1072.5764	0.57643921	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.62	5	5					1			3	3	3	2	74.564	72.818	2	0.00010641	66780	160511_QHF_FH_JSI12i_1	93.178	64.96			1.266	1.2652	47.077	9	5	Median	1.5323	1.2652	NaN	1	0	Median	0.81519	0.94667	73.309	3	2	Median	1.266	1.3299	43.806	3	2	Median	1.2401	1.3535	55.056	2	1	Median	336380000	152200000	184180000	26170000	10949000	15221000	102120000	48332000	53792000	126360000	53793000	72571000	81725000	39127000	42598000	44846	1018	42213	271858;271859;271860;271861;271862;271863;271864;271865;271866;271867;271868	364714;364715;364716;364717;364718;364719;364720;364721;364722;364723;364724;364725;364726	364717			13	
SEIDLLNIR	0	Unmodified	1071.5924	0.59242362	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.68		4	2				2	1		3	2	2	2	72.216	68.944	2	1.9574E-08	61917	160511_QHF_FH_JSI10i_2	151.04	107.82			0.7867	0.83922	15.09	8	2	Median	1.0084	0.8463	1.4459	2	1	Median	0.63123	0.76668	13.042	2	0	Median	0.69692	0.68678	23.805	2	1	Median	0.82383	0.89662	5.7419	2	0	Median	463450000	251610000	211840000	79313000	37594000	41719000	109070000	64892000	44179000	163780000	86806000	76973000	111290000	62317000	48969000	44847	891	42214	271869;271870;271871;271872;271873;271874;271875;271876;271877	364727;364728;364729;364730;364731;364732;364733;364734;364735;364736;364737;364738;364739	364739			13	
SEIDLLNIRR	0	Unmodified	1227.6935	0.69353465	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	3	2	2	56.333	55.539	2;3	8.2573E-13	49059	160511_QHF_FH_JSI10i_2	135.71	96.69			1.0574	1.0772	11.47	7	0	Median	1.2649	1.0813	NaN	1	0	Median	0.93567	1.0986	12.246	2	0	Median	1.0084	0.97915	13.495	2	0	Median	1.0172	1.0591	17.568	2	0	Median	1033900000	526730000	507210000	175780000	76371000	99406000	408230000	212560000	195670000	294360000	148730000	145630000	155570000	89059000	66514000	44848	891	42215	271878;271879;271880;271881;271882;271883;271884;271885	364740;364741;364742;364743;364744;364745;364746;364747;364748;364749;364750;364751;364752;364753;364754	364752			15	
SEIDLNLIK	1	Unmodified	1043.5863	0.58627561	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.679	66.078	2	8.1577E-05	59746	160511_QHF_FH_JSI10i_1	95.358	15.193			0.51787	0.54525	34.777	4	2	Median	0.42835	0.35565	NaN	1	1	Median	0.42176	0.488	NaN	1	0	Median	0.62609	0.60922	NaN	1	1	Median	0.75988	0.80922	NaN	1	0	Median	291990000	193030000	98960000	57028000	37765000	19263000	99701000	74869000	24832000	74397000	45192000	29205000	60867000	35207000	25660000	44849	2986	42216	271886;271887;271888;271889	364755;364756;364757;364758;364759;364760	364758			6	
SEIDLVQIK	1	Unmodified	1043.5863	0.58627561	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.16	5	2				3	4			2	4	3	5	62.514	57.364	2	3.4601E-07	30851	160513_QHF_FH_JSI10Kac_4	138.1	23.203			0.91534	0.96304	21.884	13	3	Median	0.98469	0.82371	4.635	2	0	Median	0.83418	0.97761	10.895	4	0	Median	1.0426	1.0259	17.615	2	0	Median	0.93557	1.0013	32.072	5	3	Median	2042000000	1120400000	921600000	413000000	214960000	198040000	422950000	222230000	200720000	447020000	235920000	211100000	759050000	447320000	311730000	44850	1170	42217	271890;271891;271892;271893;271894;271895;271896;271897;271898;271899;271900;271901;271902;271903	364761;364762;364763;364764;364765;364766;364767;364768;364769;364770;364771;364772;364773;364774;364775	364765			15	
SEIDMNDIK	1	Unmodified	1063.4856	0.48557529	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				2	2	3	2	42.861	38.333	2	3.1731E-08	34193	160511_QHF_FH_JSI10i_1	163.32	124.53			1.005	1.0867	48.207	9	2	Median	0.86518	0.70036	69.35	2	1	Median	0.86349	1.0283	5.8187	2	0	Median	1.1321	1.1105	73.242	3	1	Median	1.0089	1.0955	1.1343	2	0	Median	7039100000	3471300000	3567900000	1547700000	792980000	754680000	1997500000	1028100000	969410000	1765500000	840510000	924980000	1728500000	809690000	918800000	44851	805	42218	271904;271905;271906;271907;271908;271909;271910;271911;271912	364776;364777;364778;364779;364780;364781;364782;364783;364784;364785;364786;364787;364788;364789;364790;364791;364792;364793	364787			18	
SEIDMNDIK	1	Oxidation (M)	1079.4805	0.48048991	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.87	7				2	6				2	2	4	7	25.942	21.681	2	0.00013431	33722	160511_QHF_FH_JSI9i_1	94.692	68.09			0.88177	0.87789	49.208	15	7	Median	0.96577	0.78591	15.654	2	0	Median	0.89893	1.0749	32.48	2	2	Median	0.95132	0.93309	29.214	4	2	Median	0.83381	0.91327	64.014	7	3	Median	735590000	319680000	415910000	311740000	143090000	168640000	83760000	36094000	47666000	86107000	46951000	39156000	253980000	93539000	160450000	44852	805	42218	271913;271914;271915;271916;271917;271918;271919;271920;271921;271922;271923;271924;271925;271926;271927	364794;364795;364796;364797;364798;364799;364800;364801;364802;364803;364804;364805;364806;364807;364808	364802		321	14	
SEIDMNDIKAFYQK	2	Acetyl (K);Oxidation (M)	1758.8135	0.81345137	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13.6	0.49						2	3				3		2	75.097	65.584	2	6.2853E-40	34308	160513_QHF_FH_JSI10Kac_4	177.93	144.52			0.81787	0.9152	114.29	4	1	Median	NaN	NaN	NaN	0	0	Median	0.26069	0.30796	154.36	2	1	Median	NaN	NaN	NaN	0	0	Median	0.97896	1.0474	19.412	2	0	Median	20982000	12335000	8647100	0	0	0	6286800	4832100	1454700	0	0	0	14695000	7503000	7192500	44853	805	42219	271928;271929;271930;271931;271932	364809;364810;364811;364812;364813;364814	364810	440	321	6	
SEIDMNDIKAFYQK	2	Acetyl (K)	1742.8185	0.81853675	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		84.489	73.986	2	7.9702E-07	38605	160513_QHF_FH_JSI10Kac_4	152.85	129.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1986600	1986600	0	0	0	0	840970	840970	0	1145600	1145600	0	0	0	0	44854	805	42219	271933;271934	364815;364816	364815	440		2	
SEIEQDIQDLK	1	Unmodified	1316.646	0.64597533	4229	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.112	68.741	2	0.029973	37308	160513_QHF_FH_JSI10Kac_6	51.436	34.719			0.9794	1.165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9794	1.165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98704000	55008000	43696000	0	0	0	98704000	55008000	43696000	0	0	0	0	0	0	44855	4229	42220	271935	364817	364817			1	
SEIETQTEGSTEK	1	Unmodified	1437.6471	0.64709755	4016	Q96CV9	OPTN	Optineurin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.26	12.846	2	5.8148E-05	10639	160511_QHF_FH_JSI12i_1	75.819	47.093			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44856	4016	42221	271936	364818	364818			1	
SEIEYYAMLAK	1	Unmodified	1316.6322	0.63223953	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.49	4	4	3				1	4	2	6	5	4	3	72.749	68.265	2	7.6448E-27	35593	160513_QHF_FH_JSI11Kac_5	180.8	134.8			1.0795	1.0112	16.32	18	2	Median	1.1263	0.9542	6.346	6	2	Median	1.0345	1.2443	11.724	5	0	Median	1.0207	1.0192	13.109	4	0	Median	0.86903	0.95487	11.629	3	0	Plateau	8151700000	3840700000	4311000000	1919100000	818840000	1100200000	1988300000	1024700000	963620000	2559900000	1130400000	1429500000	1684400000	866840000	817560000	44857	2033	42222	271937;271938;271939;271940;271941;271942;271943;271944;271945;271946;271947;271948;271949;271950;271951;271952;271953;271954	364819;364820;364821;364822;364823;364824;364825;364826;364827;364828;364829;364830;364831;364832;364833;364834;364835;364836;364837;364838;364839;364840;364841;364842;364843;364844;364845;364846;364847;364848;364849	364842			30	
SEIEYYAMLAK	1	Oxidation (M)	1332.6272	0.62715415	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							6	8		1	5	2	6	69.621	58.929	2	8.6632E-14	31763	160513_QHF_FH_JSI11Kac_5	156.92	126.66			0.91985	1.0047	26.79	13	4	Median	0.87701	0.74541	NaN	1	0	Median	0.92934	1.1064	9.0725	4	1	Median	0.95004	0.94462	13.87	2	1	Median	0.79174	0.86678	37.094	6	2	Median	126270000	65615000	60656000	8616800	4576200	4040600	42690000	21929000	20761000	37440000	17854000	19586000	37525000	21256000	16268000	44858	2033	42222	271955;271956;271957;271958;271959;271960;271961;271962;271963;271964;271965;271966;271967;271968	364850;364851;364852;364853;364854;364855;364856;364857;364858;364859;364860;364861;364862;364863;364864	364859		1691	15	
SEIHLFLQR	0	Unmodified	1141.6244	0.62439245	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	60.951	51.841	2;3	2.4028E-05	28236	160513_QHF_FH_JSI11Kac_6	96.668	81.053			0.97771	0.98308	15.528	5	0	Median	1.4116	1.2127	NaN	1	0	Median	0.96297	1.1476	21.886	2	0	Median	0.97771	0.97788	NaN	1	0	Median	0.86606	0.94483	NaN	1	0	Median	123530000	58219000	65316000	23999000	8761100	15238000	47880000	21836000	26043000	35043000	18279000	16763000	16613000	9342400	7270600	44859	2677	42223	271969;271970;271971;271972;271973	364865;364866;364867;364868;364869;364870;364871;364872	364865			8	
SEIIPMFSNLASDEQDSVR	0	Unmodified	2136.9997	0.99974859	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	91.918	91.459	2;3	1.7283E-43	80361	160511_QHF_FH_JSI11i_2	251.68	233.1			1.1044	1.1319	15.145	16	0	Median	1.4102	1.1855	19.584	4	0	Median	0.94452	1.1218	9.4078	4	0	Median	1.1044	1.1044	20.057	4	0	Median	1.0778	1.1483	14.878	4	0	Median	1466400000	706300000	760110000	255170000	110550000	144620000	405550000	207420000	198130000	447720000	210690000	237040000	357970000	177640000	180320000	44860	1345	42224	271974;271975;271976;271977;271978;271979;271980;271981;271982;271983;271984;271985;271986;271987;271988;271989	364873;364874;364875;364876;364877;364878;364879;364880;364881;364882;364883;364884;364885;364886;364887;364888;364889;364890;364891;364892;364893;364894;364895;364896;364897;364898;364899;364900;364901;364902	364898			29	
SEIQAEQDR	0	Unmodified	1074.4942	0.49416614	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.7371	6.4251	2	4.6054E-06	6377	160511_QHF_FH_JSI12i_1	118.71	92.606			0.93687	0.97413	6.6538	7	0	Median	1.1365	0.92307	NaN	1	0	Median	0.76669	0.90006	12.587	2	0	Median	0.97905	0.96314	1.6052	2	0	Median	0.9162	0.99052	0.56201	2	0	Median	953960000	500870000	453090000	226400000	103060000	123340000	266660000	154850000	111810000	248530000	130460000	118070000	212370000	112510000	99865000	44861	2780	42225	271990;271991;271992;271993;271994;271995;271996	364903;364904;364905;364906;364907;364908;364909;364910;364911;364912	364904			10	
SEIQAEQDRK	1	Unmodified	1202.5891	0.58912916	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2				1	3	4	7.2024	5.0814	2;3	5.7332E-08	4400	160511_QHF_FH_JSI12i_2	115.29	76.021			0.88175	0.9399	25.088	8	1	Median	NaN	NaN	NaN	0	0	Median	0.78563	0.90647	NaN	1	0	Median	1.029	0.97455	17.379	3	0	Median	1.1794	1.3259	34.945	4	1	Linear	555640000	287160000	268480000	0	0	0	84834000	62521000	22313000	241850000	106140000	135710000	228950000	118490000	110460000	44862	2780	42226	271997;271998;271999;272000;272001;272002;272003;272004	364913;364914;364915;364916;364917;364918;364919;364920	364914			8	
SEIQTLK	1	Unmodified	817.45453	0.45453316	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				17.361	16.299	2	0.011696	13528	160511_QHF_FH_JSI9i_1	60.972	13.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44863	2525	42227	272005	364921	364921			1	
SEISELRR	0	Unmodified	988.53016	0.53015772	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	2	1		15.281	14.633	2	0.0023164	12206	160511_QHF_FH_JSI10i_2	81.296	6.1871		+	0.76571	0.76937	16.682	4	1	Median	0.83805	0.73932	NaN	1	0	Median	0.6426	0.75525	8.2534	2	1	Median	1.0378	1.0318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243980000	134730000	109240000	101480000	49913000	51563000	112290000	69842000	42446000	30212000	14979000	15234000	0	0	0	44864	65	42228	272006;272007;272008;272009	364922;364923;364924	364924			3	
SEISENTDASGK	1	Unmodified	1236.547	0.54698957	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.84	7				3	2	1			1	3	4	5	11.813	8.5653	2	1.0642E-16	7907	160511_QHF_FH_JSI12i_1	207.29	185.2			1.2027	1.2276	34.775	12	8	Median	0.76999	0.62979	NaN	1	1	Median	0.88622	0.99719	34.144	3	2	Median	1.3525	1.2845	24.733	4	3	Median	1.1181	1.1771	33.958	4	2	Median	1052200000	427730000	624470000	128630000	71456000	57174000	268570000	118910000	149660000	270880000	104520000	166370000	384120000	132840000	251270000	44865	5293	42229	272010;272011;272012;272013;272014;272015;272016;272017;272018;272019;272020;272021;272022	364925;364926;364927;364928;364929;364930;364931;364932;364933;364934;364935;364936;364937;364938	364928			14	
SEISGDLAR	0	Unmodified	946.47197	0.47197413	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27	4					2	3			1	3	2	3	25.132	20.347	2	0.00064398	17589	160511_QHF_FH_JSI9i_1	76.827	10.145			1.0457	1.0466	15.052	9	1	Median	1.2265	1.0237	NaN	1	0	Median	0.77189	0.94324	23.476	3	0	Plateau	1.1268	1.1098	19.025	2	1	Median	0.94251	1.0085	11.436	3	0	Plateau	1430100000	704320000	725780000	332060000	134720000	197340000	286440000	156060000	130380000	435830000	225560000	210270000	375770000	187980000	187780000	44866	891	42230	272023;272024;272025;272026;272027;272028;272029;272030;272031	364939;364940;364941;364942;364943;364944;364945;364946	364944			8	
SEISLLPSDIDR	0	Unmodified	1343.6933	0.69325988	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		69.277	68.729	2	1.0952E-15	61063	160511_QHF_FH_JSI9i_1	143.89	103.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44867	1558	42231	272032;272033;272034	364947;364948;364949	364949			3	
SEITLVGISK	1	Unmodified	1045.6019	0.60192568	3450	Q8IXW5	RPAP2	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		66.655	55.79	2	1.0184E-05	30212	160513_QHF_FH_JSI10Kac_4	105.4	41.917			0.69858	0.75276	27.95	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78333	0.91725	NaN	1	0	Median	0.62301	0.61777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8254600	4884700	3369800	0	0	0	5218200	2959000	2259200	3036400	1925800	1110600	0	0	0	44868	3450	42232	272035;272036	364950;364951	364950			2	
SEIVPLFTSLASDEQDSVR	0	Unmodified	2092.0324	0.032428925	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	97.352	96.95	2;3	0.00013887	84949	160511_QHF_FH_JSI11i_2	71.607	49.734			1.3638	1.4641	3.8325	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3638	1.4641	3.8325	2	2	Median	15713000	6341400	9371300	0	0	0	0	0	0	0	0	0	15713000	6341400	9371300	44869	1346	42233	272037;272038;272039;272040;272041	364952;364953;364954;364955;364956	364956			5	
SEIWGPGLK	1	Unmodified	985.52328	0.52328142	3147	Q6UW63	KDELC1	KDEL motif-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.545	49.565	2	0.00020645	42608	160511_QHF_FH_JSI11i_2	85.064	66.333			1.1404	1.4308	28.372	4	0	Linear	0.95456	0.82069	NaN	1	0	Median	0.7786	0.95168	NaN	1	0	Median	1.3812	1.3702	NaN	1	0	Median	1.3625	1.4799	NaN	1	0	Median	146140000	72366000	73769000	24648000	14725000	9923000	32542000	18726000	13816000	43657000	16533000	27124000	45288000	22382000	22906000	44870	3147	42234	272042;272043;272044;272045	364957;364958;364959;364960	364959			3	
SEKFGSPK	2	Unmodified	878.44978	0.44978213	4256	Q96T58	SPEN	Msx2-interacting protein	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	2	0.577	1	4	1							1	1	2	2	104.04	103.97	1	0.019766	94707	160511_QHF_FH_JSI11i_1	48.561	9.7695			0.89608	0.96786	7.9922	6	0	Median	1.1627	0.98775	NaN	1	0	Median	0.80565	0.97578	NaN	1	0	Median	1.0377	1.0392	11.207	2	0	Median	0.85728	0.91312	5.0008	2	0	Median	759600000	388090000	371510000	159320000	75186000	84133000	142330000	68568000	73757000	238600000	122160000	116440000	219350000	122180000	97173000	44871	4256	42235	272046;272047;272048;272049;272050;272051	364961	364961			0	
SEKGQPQNSK	2	Acetyl (K)	1143.552	0.55201537	1870	P56181	NDUFV3	NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	2	1	6.1098	-1.1353	2	0.001645	2200	160513_QHF_FH_JSI11Kac_3	85.731	56.258			0.75796	0.84929	7.5578	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7667	0.89591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74932	0.80509	NaN	1	0	Median	8023000	5599300	2423700	0	0	0	2328300	1171400	1156900	2501900	2501900	0	3192800	1926000	1266800	44872	1870	42236	272052;272053;272054;272055	364962;364963;364964;364965;364966;364967	364963	1890		6	
SEKSVEAAAELSAK	2	Acetyl (K);Acetyl (Protein N-term)	1502.7464	0.74641766	1186	P20962	PTMS	Parathymosin	yes	yes	1	1	0	1				By MS/MS	11	0				2									2	73.194	64.458	2	0.000545	25382	160513_QHF_FH_JSI12Kacf_1	85.288	61.913			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44873	1186	42237	272056;272057	364968;364969	364969	1041;1042		2	
SEKVQDLLLLDVAPLSLGLETAGGVMTALIK	2	Acetyl (K)	3235.7989	0.79891751	1416	P34931	HSPA1L	Heat shock 70 kDa protein 1-like	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	106.91	97.472	3	0.0016832	53457	160513_QHF_FH_JSI12Kac_6	52.669	41.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4503800	0	4503800	0	0	0	0	0	0	0	0	0	4503800	0	4503800	44874	1416	42238	272058	364970	364970	1378		1	
SELDMLDIR	0	Unmodified	1090.5329	0.53285983	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	4	2	2	67.892	66.153	2	1.5161E-09	60088	160511_QHF_FH_JSI10i_1	155.07	89.816			0.9614	1.0064	13.723	10	2	Median	1.231	1.0484	6.4658	2	0	Median	0.69249	0.84705	22.131	4	2	Linear	1.0278	1.0204	8.2602	2	0	Median	0.91387	0.98767	0.17126	2	0	Median	1323100000	669200000	653900000	255710000	121870000	133840000	406280000	218770000	187510000	364460000	182490000	181970000	296660000	146070000	150580000	44875	891	42239	272059;272060;272061;272062;272063;272064;272065;272066;272067;272068	364971;364972;364973;364974;364975;364976;364977;364978;364979;364980;364981;364982;364983;364984;364985;364986;364987	364980			17	
SELDMLDIREIFR	0	Unmodified	1635.829	0.82904185	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	101.05	100.85	3	0.0028288	86755	160511_QHF_FH_JSI12i_2	58.752	31.104			1.7452	1.8834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7452	1.8834	NaN	1	1	Median	14413000	4628000	9785300	0	0	0	0	0	0	0	0	0	14413000	4628000	9785300	44876	891	42240	272069	364988	364988			1	
SELDQLRQEAEQLK	1	Acetyl (Protein N-term)	1727.869	0.86899241	2030	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	3	3								2	2	2		82.854	82.308	2	7.2838E-22	74960	160511_QHF_FH_JSI11i_1	90.653	58.047			1.005	1.0293	5.4947	6	0	Median	1.3117	1.1035	2.3883	2	0	Median	0.86816	1.0216	4.1598	2	0	Median	1.005	0.99108	2.2673	2	0	Median	NaN	NaN	NaN	0	0	Median	1014700000	532350000	482360000	229460000	107990000	121470000	394590000	223980000	170620000	390660000	200380000	190280000	0	0	0	44877	2030	42241	272070;272071;272072;272073;272074;272075	364989;364990;364991;364992;364993;364994;364995;364996	364989			8	
SELEDFELDK	1	Unmodified	1223.5558	0.55576334	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.997	56.338	2	0.0099644	51196	160511_QHF_FH_JSI12i_1	48.981	23.042			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44878	5034	42242	272076	364997	364997			1	
SELEFETLK	1	Unmodified	1094.5496	0.54955575	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.128	53.464	2	0.00023016	48712	160511_QHF_FH_JSI12i_1	99.802	74.243			2.61	2.3218	105.29	4	4	Median	1.5017	1.2254	NaN	1	1	Median	6.1482	7.1692	NaN	1	1	Median	4.5365	4.3994	NaN	1	1	Median	0.7467	0.76329	NaN	1	1	Median	872880000	145390000	727490000	126170000	28552000	97617000	381560000	35142000	346420000	299470000	49499000	249970000	65679000	32195000	33484000	44879	2902	42243	272077;272078;272079;272080	364998;364999;365000;365001	364999			4	
SELEFKFNRK	2	Acetyl (K)	1338.6932	0.6932003	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	56.697	47.37	3	0.0046906	24788	160513_QHF_FH_JSI12Kac_6	65.5	59.998			0.71119	0.66041	39.053	4	0	Median	0.75808	0.62787	NaN	1	0	Median	0.57047	0.67249	NaN	1	0	Median	0.6672	0.64855	NaN	1	0	Median	1.3174	1.4152	NaN	1	0	Median	114980000	68147000	46832000	15071000	9650300	5421100	47703000	31073000	16630000	23280000	13965000	9314200	28926000	13459000	15467000	44880	4943	42244	272081;272082;272083;272084	365002;365003;365004;365005	365003	3276		4	
SELELTLGK	1	Unmodified	988.54408	0.54407645	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	53.318	52.325	2	0.0016754	47105	160511_QHF_FH_JSI10i_1	68.016	15.613			0.67199	0.78302	46.366	3	0	Plateau	0.42363	0.34277	NaN	1	0	Median	0.67199	0.78302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70122	0.74617	NaN	1	0	Median	74868000	46838000	28030000	13438000	8475400	4963000	38185000	24556000	13629000	0	0	0	23244000	13807000	9437300	44881	2636	42245	272085;272086;272087	365006;365007;365008	365008			2	
SELEMAQEDLSMTQK	1	Unmodified	1738.7754	0.7753513	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.868	41.9	3	0.018789	36672	160511_QHF_FH_JSI9i_2	32.275	26.371			1.5178	1.6117	10.405	4	0	Median	1.542	1.3282	NaN	1	0	Median	1.2657	1.5798	NaN	1	0	Median	1.6181	1.6441	NaN	1	0	Median	1.494	1.6613	NaN	1	0	Median	1460500000	630770000	829760000	351740000	152340000	199400000	293120000	161070000	132050000	449980000	187940000	262040000	365680000	129410000	236270000	44882	2269	42246	272088;272089;272090;272091	365009;365010;365011;365012;365013;365014;365015	365010			7	
SELEQLR	0	Acetyl (Protein N-term)	915.46616	0.46616048	2032;4830	P62879;Q9HAV0	GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			47.996	47.172	2	0.0014153	42427	160511_QHF_FH_JSI10i_1	105.2	18.688			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44883	2032;4830	42247	272092;272093	365016;365017	365016			2	
SELEQLRQEAEQLR	0	Acetyl (Protein N-term)	1769.8908	0.89079049	2032;4830	P62879;Q9HAV0	GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	no	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							2	2	3	3	83.301	82.822	2;3	2.0226E-12	71605	160511_QHF_FH_JSI12i_2	200.44	173.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44884	2032;4830	42248	272094;272095;272096;272097;272098;272099;272100;272101;272102;272103	365018;365019;365020;365021;365022;365023;365024;365025;365026;365027;365028;365029;365030;365031	365021			14	
SELGNQSPSTSSR	0	Unmodified	1348.6219	0.62188585	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.17	4					3	2			1	2	3	3	13.457	9.1775	2	6.8079E-53	8517	160511_QHF_FH_JSI12i_1	218.01	143.89			0.99557	1.024	10.985	9	0	Median	1.2098	1.0032	NaN	1	0	Median	0.8417	0.99931	9.1576	2	0	Median	1.1542	1.1339	14.36	3	0	Plateau	0.99557	1.0501	11.292	3	0	Median	726240000	357630000	368610000	160810000	74162000	86646000	182130000	102320000	79815000	188150000	94419000	93734000	195150000	86736000	108410000	44885	2906	42249	272104;272105;272106;272107;272108;272109;272110;272111;272112	365032;365033;365034;365035;365036;365037;365038;365039;365040;365041;365042	365034			11	
SELHIENLNMEADPGQYR	0	Unmodified	2114.9691	0.96911716	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	3.3		9	4					1		3	3	5	3	62.686	61.122	2;3	2.3565E-98	53201	160511_QHF_FH_JSI11i_2	297.83	294.11			1.076	1.06	8.6966	14	1	Median	1.2475	1.0244	5.547	3	0	Median	0.836	1.0274	2.8666	3	0	Plateau	1.1376	1.0588	12.704	5	1	Median	0.99033	1.1072	5.9246	3	0	Median	6560400000	3219100000	3341400000	1328900000	557340000	771570000	1768700000	965060000	803590000	2097100000	1015300000	1081800000	1365800000	681390000	684370000	44886	1441	42250	272113;272114;272115;272116;272117;272118;272119;272120;272121;272122;272123;272124;272125;272126	365043;365044;365045;365046;365047;365048;365049;365050;365051;365052;365053;365054;365055;365056;365057;365058;365059;365060;365061;365062;365063;365064;365065;365066;365067	365058			23	
SELHIENLNMEADPGQYR	0	Oxidation (M)	2130.964	0.96403178	1441	P35613	BSG	Basigin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.37		2						3		1	1	1	2	58.888	51.235	2;3	3.2146E-07	43981	160511_QHF_FH_JSI12i_2	105.39	100.49			1.0675	1.1807	3.4711	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9392	1.1015	NaN	1	0	Median	1.1461	1.1397	NaN	1	0	Median	1.0675	1.1807	NaN	1	0	Median	199970000	93617000	106350000	0	0	0	2766700	1113400	1653300	19747000	9913900	9833200	177450000	82589000	94865000	44887	1441	42250	272127;272128;272129;272130;272131	365068;365069;365070;365071;365072;365073	365068		1117	6	
SELIPYLVR	0	Unmodified	1088.623	0.62299547	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.021	72.144	2	7.2096E-05	64094	160511_QHF_FH_JSI10i_2	96.19	79.651			0.81034	0.87818	7.4739	4	0	Median	1.0503	0.88741	NaN	1	0	Median	0.76093	0.9277	NaN	1	0	Median	0.86295	0.86905	NaN	1	0	Median	0.69091	0.77816	NaN	1	0	Median	283100000	151460000	131630000	39628000	16567000	23062000	65765000	37289000	28476000	108850000	50724000	58129000	68850000	46883000	21967000	44888	4946	42251	272132;272133;272134;272135	365074;365075;365076;365077;365078;365079;365080	365080			7	
SELIQLVAVTQK	1	Unmodified	1327.7711	0.77111627	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.8	6.37		2						3			1	2	2	78.469	71.814	2	1.5956E-15	34853	160513_QHF_FH_JSI10Kac_5	137.17	110.65			0.86623	0.93847	10.454	5	1	Median	NaN	NaN	NaN	0	0	Median	0.82469	0.98491	NaN	1	0	Median	0.91727	0.89787	6.2542	2	0	Median	0.93368	1.0203	15.102	2	1	Median	54850000	27656000	27194000	0	0	0	2508100	1415800	1092300	33198000	17677000	15521000	19144000	8563300	10581000	44889	5465	42252	272136;272137;272138;272139;272140	365081;365082;365083;365084;365085;365086;365087	365086			7	
SELKELLTR	1	Acetyl (K)	1129.6343	0.63428844	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.495								4	3	1	2	2	2	74.823	65.04	2	0.0004295	33537	160513_QHF_FH_JSI9Kac_5	92.538	68.583			0.62914	0.68898	90.134	7	1	Median	4.4709	3.7213	NaN	1	1	Median	1.0681	1.2578	23.336	2	0	Median	0.33522	0.32607	6.5913	2	0	Median	0.49506	0.53843	34.867	2	0	Median	259290000	163370000	95923000	3081500	613740	2467800	64456000	32672000	31785000	157210000	106310000	50906000	34541000	23775000	10765000	44890	1278	42253	272141;272142;272143;272144;272145;272146;272147	365088;365089;365090;365091;365092;365093;365094;365095;365096	365088	1190		9	
SELKHAK	2	Acetyl (K)	853.46577	0.46576654	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.287							1	10		2	3	3	3	7.0966	-2.4323	2;3	0.0024445	2458	160513_QHF_FH_JSI11Kac_5	106.36	27.24			0.90097	1.0006	123.68	9	2	Median	1.0685	0.90733	6.8102	2	0	Median	0.84795	1.0015	10.148	3	0	Median	2.588	2.575	209.77	2	1	Median	3.7902	4.1923	202.61	2	1	Median	111330000	40749000	70582000	15663000	7605500	8057000	35116000	18499000	16617000	40410000	8986700	31424000	20142000	5657400	14485000	44891	1837	42254	272148;272149;272150;272151;272152;272153;272154;272155;272156;272157;272158	365097;365098;365099;365100;365101;365102;365103;365104;365105;365106;365107	365101	1847		11	
SELLMIIQMETQSSMR	0	Unmodified	1895.9155	0.91549037	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.906	86.186	3	0.050001	49304	160513_QHF_FH_JSI10Kac_6	36.029	18.81			0.45981	0.53996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45981	0.53996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45441000	31013000	14428000	0	0	0	45441000	31013000	14428000	0	0	0	0	0	0	44892	127	42255	272159	365108	365108			0	
SELLMIIQMETQSSMRK	1	Unmodified	2024.0105	0.010453391	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		90.954	88.104	3	0.00029492	45165	160513_QHF_FH_JSI10Kac_6	91.475	76.053			1.8748	2.0192	10.727	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5602	1.8718	NaN	1	1	Median	2.2528	2.1784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	104930000	37194000	67740000	0	0	0	95822000	35647000	60176000	9111500	1547200	7564300	0	0	0	44893	127	42256	272160;272161	365109;365110	365110			2	
SELLNELMDSAK	1	Unmodified	1348.6544	0.65443153	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	84.056	82.962	2	0.0001255	71696	160511_QHF_FH_JSI12i_2	101.93	83.617			1.9433	2.1455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9433	2.1455	NaN	1	1	Median	76792000	24123000	52669000	0	0	0	0	0	0	0	0	0	76792000	24123000	52669000	44894	4064	42257	272162	365111	365111			1	
SELLSQLQQHEEESR	0	Unmodified	1811.865	0.86496967	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	1	2	1	47.121	46.568	2;3	9.7065E-52	40973	160511_QHF_FH_JSI11i_3	215.85	202.19			0.64712	0.69279	51.366	6	1	Median	0.38137	0.33278	52.368	2	0	Median	0.51958	0.64175	NaN	1	0	Median	0.90137	0.85037	18.161	2	0	Median	0.76807	0.78593	NaN	1	1	Median	560750000	346270000	214480000	221110000	159170000	61941000	29257000	18638000	10619000	240490000	132600000	107880000	69898000	35863000	34036000	44895	3868	42258	272163;272164;272165;272166;272167;272168	365112;365113;365114;365115;365116;365117;365118;365119;365120;365121	365114			10	
SELLVEQGR	0	Unmodified	1029.5455	0.54547343	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	28.228	27.396	2	0.00071823	23054	160511_QHF_FH_JSI12i_2	80.165	45.358			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44896	3896	42259	272169;272170	365122;365123	365122			2	
SELLVPGSQLILGPHESK	1	Unmodified	1903.0415	0.041477469	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.759	79.97	3	2.631E-07	70272	160511_QHF_FH_JSI11i_2	79.676	69.888			0.79415	0.84525	13.613	4	0	Median	1.309	1.1048	NaN	1	0	Median	0.70292	0.84264	NaN	1	0	Median	0.86441	0.84786	NaN	1	0	Median	0.72959	0.83484	NaN	1	0	Median	182600000	96444000	86157000	39804000	14775000	25029000	42726000	23820000	18906000	64649000	32531000	32118000	35423000	25318000	10105000	44897	4288	42260	272171;272172;272173;272174	365124;365125;365126;365127;365128;365129;365130;365131;365132;365133	365129			10	
SELNLLVEK	1	Unmodified	1043.5863	0.58627561	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.29	65.991	2	0.030816	56848	160511_QHF_FH_JSI12i_2	40.002	8.0671			1.2802	1.3954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2802	1.3954	NaN	1	0	Median	18748000	8932200	9816300	0	0	0	0	0	0	0	0	0	18748000	8932200	9816300	44898	5458	42261	272175	365134	365134			1	
SELNLRR	0	Unmodified	886.49846	0.49846366	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.71	0.452		2	5							3	4			13.12	12.359	2;3	0.00084117	9663	160511_QHF_FH_JSI9i_3	127.84	43.6			0.9646	0.94516	12.26	6	1	Median	1.0441	0.82241	11.119	3	0	Median	0.79947	0.91004	9.9603	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2243500000	1117200000	1126200000	1592800000	764750000	828020000	650700000	352490000	298220000	0	0	0	0	0	0	44899	856	42262	272176;272177;272178;272179;272180;272181;272182	365135;365136;365137;365138;365139;365140;365141;365142;365143;365144	365139			10	
SELPDSIESALQGDER	0	Unmodified	1744.8115	0.81153711	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	73.494	73.044	2	0.014302	66463	160511_QHF_FH_JSI12i_1	50.207	31.94			0.70702	0.72536	2.6166	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7226	0.71206	NaN	1	1	Median	0.69177	0.7389	NaN	1	1	Median	50687000	32996000	17691000	0	0	0	0	0	0	27685000	17421000	10264000	23003000	15576000	7426800	44900	5409	42263	272183;272184	365145;365146	365146			2	
SELPDYYLTIK	1	Unmodified	1340.6864	0.68638359	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	72.473	72.011	2	0.0044164	65432	160511_QHF_FH_JSI11i_1	64.82	17.622			0.68948	0.67313	30.37	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86609	0.83437	NaN	1	1	Median	0.54888	0.54304	NaN	1	1	Median	34900000	23497000	11403000	0	0	0	0	0	0	19837000	13990000	5847400	15063000	9507300	5555800	44901	3318	42264	272185;272186	365147;365148	365147			2	
SELPLDPLPVPTEEGNPLLK	1	Unmodified	2157.1569	0.15690116	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.32	101.21	2;3	5.8201E-161	91919	160511_QHF_FH_JSI11i_1	306.14	293.58			1.1734	1.1302	15.077	8	0	Median	1.248	1.0372	4.7691	2	0	Median	0.89605	1.042	18.868	2	0	Median	1.1857	1.1678	15.31	2	0	Median	1.2679	1.3281	12.647	2	0	Median	1607700000	806070000	801600000	311720000	144460000	167260000	453590000	243660000	209930000	360890000	179320000	181570000	481460000	238620000	242840000	44902	2705	42265	272187;272188;272189;272190;272191;272192;272193;272194	365149;365150;365151;365152;365153;365154;365155;365156;365157;365158;365159;365160;365161;365162;365163	365150			15	
SELPQDVYTIK	1	Unmodified	1291.666	0.66598249	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	53.838	53.345	2	3.7413E-07	48587	160511_QHF_FH_JSI12i_1	118.4	84.217			0.97854	0.99001	15.589	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6962	0.82712	NaN	1	0	Median	1.1477	1.1121	NaN	1	0	Median	0.83431	0.8813	NaN	1	0	Median	606270000	317010000	289260000	0	0	0	176440000	96056000	80386000	217450000	102290000	115160000	212380000	118660000	93715000	44903	2570	42266	272195;272196;272197	365164;365165;365166;365167;365168;365169	365167			5	
SELPSCR	0	Unmodified	847.3858	0.38580166	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	11.494	11.239	2	0.010853	8827	160511_QHF_FH_JSI11i_1	73.039	37.933			2.7053	2.2769	15.322	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.9099	2.2769	NaN	1	0	Median	2.0896	2.0403	NaN	1	0	Median	2.7053	2.7614	NaN	1	0	Median	162890000	56825000	106070000	0	0	0	53822000	21488000	32334000	53971000	17281000	36690000	55097000	18056000	37041000	44904	737	42267	272198;272199;272200	365170	365170			1	
SELSGNFEK	1	Unmodified	1009.4716	0.47163978	1723	P50995;P27216	ANXA11;ANXA13	Annexin A11;Annexin A13	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	25.908	23.136	2	0.00018053	20234	160511_QHF_FH_JSI11i_1	86.67	46.567			1.0283	1.048	21.527	4	2	Median	0.89344	0.72192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1816	1.138	3.0106	2	1	Median	0.92472	0.98597	NaN	1	0	Median	908410000	471970000	436440000	232660000	125710000	106950000	0	0	0	329260000	162440000	166820000	346490000	183810000	162680000	44905	1723	42268	272201;272202;272203;272204;272205	365171;365172;365173;365174;365175;365176;365177	365172			7	
SELSGNFEQVIVGMMTPTVLYDVQELR	0	Unmodified	3054.5042	0.50420883	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.28	103.18	3	1.6071E-12	90963	160511_QHF_FH_JSI11i_2	82.169	75.665			1.59	1.6018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.59	1.6018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34068000	9245800	24822000	0	0	0	0	0	0	34068000	9245800	24822000	0	0	0	44906	932	42269	272206	365178	365178			1	
SELSGNFEQVIVGMMTPTVLYDVQELRR	0	Unmodified	3210.6053	0.60531985	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			98.142	92.422	3	2.2441E-116	53978	160513_QHF_FH_JSI10Kac_6	236.03	211.96			1.1682	1.3842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1682	1.3842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	220150000	112160000	107990000	0	0	0	220150000	112160000	107990000	0	0	0	0	0	0	44907	932	42270	272207	365179;365180	365180			2	
SELSGNMEELILALFMPPTYYDAWSLRK	1	Unmodified	3273.609	0.60900825	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			101.34	95.621	3;4	1.8535E-71	56455	160513_QHF_FH_JSI10Kac_6	202.04	185.42			0.98226	1.1789	14.581	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98226	1.1789	14.581	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	273260000	159990000	113270000	0	0	0	273260000	159990000	113270000	0	0	0	0	0	0	44908	1170	42271	272208;272209	365181;365182;365183	365182			3	
SELSQNISAR	0	Unmodified	1103.5571	0.55710075	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3.57	4.27	1	5					1			1	1	3	2	20.723	19.987	2	0.0050363	16483	160511_QHF_FH_JSI11i_2	64.04	33.428			0.79951	0.98895	26.865	5	2	Median	1.4967	1.2674	NaN	1	0	Median	0.79951	0.98895	NaN	1	0	Median	1.5096	1.4971	NaN	1	1	Median	0.75867	0.82072	4.9746	2	1	Median	151060000	81754000	69309000	29193000	13852000	15341000	27548000	12956000	14592000	29782000	12420000	17362000	64540000	42526000	22014000	44909	4564	42272	272210;272211;272212;272213;272214;272215;272216	365184;365185;365186;365187;365188;365189	365188			5	
SELTDSASVLDNFK	1	Unmodified	1524.7308	0.7307676	381	O43815	STRN	Striatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	74.11	73.517	2	7.8135E-41	66654	160511_QHF_FH_JSI10i_1	176.78	134.18			0.78922	0.83637	18.617	4	4	Linear	0.98647	0.81317	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7545	0.73668	NaN	1	1	Median	0.9277	0.98909	19.739	2	2	Median	185680000	94831000	90845000	43781000	20134000	23647000	0	0	0	53994000	29414000	24579000	87901000	45283000	42618000	44910	381	42273	272217;272218;272219;272220;272221;272222	365190;365191;365192;365193;365194;365195	365194			6	
SELTETQAEK	1	Unmodified	1134.5404	0.54044763	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	14.304	11.622	2	4.9221E-06	9801	160511_QHF_FH_JSI11i_1	109.29	86.55			0.95139	1.0037	24.697	6	2	Linear	1.4179	1.1779	NaN	1	1	Median	0.76477	0.92179	NaN	1	0	Median	1.2907	1.2548	37.585	2	1	Median	1.2762	1.3632	24.07	2	0	Median	326950000	169470000	157480000	87731000	36036000	51695000	81552000	53212000	28340000	79472000	42487000	36985000	78193000	37730000	40463000	44911	4870	42274	272223;272224;272225;272226;272227;272228	365196;365197;365198;365199;365200;365201;365202	365197			7	
SELTGKFEK	2	Unmodified	1037.5393	0.53932542	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									1	4	19.218	19.231	2;3	0.0030144	15364	160511_QHF_FH_JSI12i_3	60.518	33.215			2.192	2.1606	115.76	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4173	2.2586	NaN	1	1	Median	1.9877	2.0668	136.45	3	3	Median	638450000	237290000	401160000	0	0	0	0	0	0	77268000	26281000	50987000	561180000	211010000	350170000	44912	916	42275	272229;272230;272231;272232;272233	365203;365204;365205;365206;365207;365208	365204			6	
SELTGKFEK	2	Acetyl (K)	1079.5499	0.5498901	916	P08758	ANXA5	Annexin A5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	48.581	38.78	2	4.9262E-05	21513	160513_QHF_FH_JSI10Kac_4	125.48	74.873			0.78031	0.888	105.84	6	1	Median	NaN	NaN	NaN	0	0	Median	1.1372	1.3483	6.2206	2	0	Median	0.38268	0.37204	17.728	2	0	Median	1.7311	1.9097	161.13	2	1	Median	134300000	89522000	44778000	0	0	0	39131000	19934000	19198000	62590000	47447000	15144000	32578000	22142000	10436000	44913	916	42275	272234;272235;272236;272237;272238;272239	365209;365210;365211;365212;365213;365214;365215;365216;365217	365209	669;673		9	
SELVAMLEEEELRK	1	Unmodified	1674.8498	0.84983687	1498	P40616	ARL1	ADP-ribosylation factor-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.22	0.416		7	2							3	3		3	75.539	74.823	2;3	3.7987E-07	65213	160511_QHF_FH_JSI12i_3	113.72	87.288			0.84821	0.95393	31.898	9	6	Median	1.4655	1.2486	27.894	3	3	Plateau	0.81391	1.0075	51.678	3	2	Median	NaN	NaN	NaN	0	0	Median	0.84821	0.89707	17.938	3	1	Median	761780000	375100000	386690000	242850000	105110000	137750000	227170000	101490000	125680000	0	0	0	291760000	168500000	123260000	44914	1498	42276	272240;272241;272242;272243;272244;272245;272246;272247;272248	365218;365219;365220;365221;365222;365223;365224;365225;365226	365226			9	
SELVANNVTLPAGEQR	0	Unmodified	1696.8744	0.87441214	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					1	3	2	55.686	51.626	2	1.7607E-80	46497	160511_QHF_FH_JSI11i_1	241.51	194.91			0.99	0.99448	6.021	5	1	Median	NaN	NaN	NaN	0	0	Median	0.83216	0.99448	NaN	1	0	Median	0.99094	0.95984	0.83049	2	1	Median	1.0069	1.0748	3.5732	2	0	Median	731290000	405750000	325540000	0	0	0	224810000	134530000	90277000	295210000	154560000	140650000	211280000	116660000	94612000	44915	1526;1527	42277	272249;272250;272251;272252;272253;272254	365227;365228;365229;365230;365231;365232;365233;365234;365235	365227			9	
SELVANNVTLPAGEQRK	1	Unmodified	1824.9694	0.96937516	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.78	5	8	4				3	4		3	6	8	7	46.575	42.764	2;3	1.9254E-53	36547	160511_QHF_FH_JSI12i_3	188.27	170.56			0.97851	0.99599	19.673	22	2	Median	1.2555	1.0759	14.554	3	0	Median	0.85293	1.0335	10.218	5	0	Median	1.0307	0.94995	17.115	7	1	Median	0.8621	0.91039	26.336	7	1	Median	3437400000	1763900000	1673500000	548640000	218990000	329650000	803710000	469790000	333920000	1266100000	642630000	623440000	818930000	432460000	386470000	44916	1526;1527	42278	272255;272256;272257;272258;272259;272260;272261;272262;272263;272264;272265;272266;272267;272268;272269;272270;272271;272272;272273;272274;272275;272276;272277;272278	365236;365237;365238;365239;365240;365241;365242;365243;365244;365245;365246;365247;365248;365249;365250;365251;365252;365253;365254;365255;365256;365257;365258;365259;365260;365261;365262;365263;365264;365265;365266;365267;365268;365269;365270;365271;365272;365273;365274;365275;365276;365277;365278;365279;365280;365281;365282	365279			45	
SELVGKELK	2	Acetyl (K)	1043.5863	0.58627561	5820				yes	yes	1	0	0	1		By MS/MS			14	0							1				1			57.012	46.373	2	0.025646	25671	160513_QHF_FH_JSI10Kac_4	49.418	8.3889	+		0.59582	0.68513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59582	0.68513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2416900	1389100	1027700	0	0	0	2416900	1389100	1027700	0	0	0	0	0	0	44917	5820	42279	272279	365283	365283	3570		1	
SELWVYK	1	Unmodified	923.47527	0.4752686	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.909	49.383	2	0.010482	42484	160511_QHF_FH_JSI11i_2	80.462	26.908			0.55935	0.57417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55935	0.57417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90501000	58193000	32308000	0	0	0	0	0	0	90501000	58193000	32308000	0	0	0	44918	2549	42280	272280	365284	365284			1	
SEMEMAHLYSLCDAAHAQTEVAK	1	Unmodified	2591.1454	0.14544332	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	65.219	63.919	3	0.0032333	55016	160511_QHF_FH_JSI12i_2	40.756	37.093			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5484500	0	5484500	0	0	0	0	0	0	0	0	0	5484500	0	5484500	44919	611	42281	272281;272282	365285;365286	365286			2	
SEMEVQDAELK	1	Oxidation (M)	1293.5758	0.57584686	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.74	5				3	3				2	3	3	3	28.508	23.636	2	8.1249E-23	19803	160511_QHF_FH_JSI12i_1	170.89	155.74			1.0563	1.0669	12.291	11	1	Median	1.3785	1.1186	33.857	2	1	Median	0.88475	1.0274	6.079	3	0	Median	1.0861	1.0668	8.5112	3	0	Plateau	1.0563	1.1018	4.5313	3	0	Plateau	2116400000	899170000	1217300000	996060000	342660000	653390000	330360000	177600000	152750000	277880000	128610000	149270000	512140000	250300000	261840000	44920	5475	42282	272283;272284;272285;272286;272287;272288;272289;272290;272291;272292;272293	365287;365288;365289;365290;365291;365292;365293;365294;365295;365296;365297;365298;365299;365300;365301;365302;365303	365289		2675	17	
SEMEVQDAELK	1	Unmodified	1277.5809	0.58093224	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	5.57	4		1		3	3				2	3	3	3	40.754	35.443	2	6.7262E-38	31607	160511_QHF_FH_JSI11i_1	204.5	172.56			1.0569	1.1128	18.927	9	1	Median	0.87449	0.73185	NaN	1	0	Median	0.87627	1.0435	11.048	3	0	Plateau	1.0012	0.97672	15.632	3	0	Plateau	1.1423	1.2286	14.001	2	1	Median	13689000000	6853500000	6835800000	2280100000	1100600000	1179500000	4158800000	2208500000	1950300000	3699200000	1806300000	1892900000	3551300000	1738200000	1813100000	44921	5475	42282	272294;272295;272296;272297;272298;272299;272300;272301;272302;272303;272304	365304;365305;365306;365307;365308;365309;365310;365311;365312;365313;365314;365315;365316;365317;365318	365304			15	
SEMIEYHDISGCYILRPWAYAIWEAIK	1	Unmodified	3313.594	0.59402689	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.642	90.921	4	1.0728E-99	52725	160513_QHF_FH_JSI10Kac_6	228.96	205.39			1.1443	1.3179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1443	1.3179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182040000	86936000	95102000	0	0	0	182040000	86936000	95102000	0	0	0	0	0	0	44922	878	42283	272305	365319;365320	365319			2	
SEMLEIVQAIYK	1	Unmodified	1422.7429	0.74285261	1468	P37235	HPCAL1	Hippocalcin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	93.968	89.738	2	5.8867E-50	43219	160513_QHF_FH_JSI12Kac_6	211.78	59.238			0.93471	0.96355	9.9032	8	1	Median	1.1518	0.97459	11.765	2	1	Median	0.79855	0.94692	15.549	2	0	Median	0.95946	0.96355	9.5451	2	0	Median	0.8901	0.95991	14.379	2	0	Median	598780000	307020000	291760000	112000000	52385000	59613000	196440000	115240000	81195000	148080000	66610000	81471000	142260000	72778000	69485000	44923	1468	42284	272306;272307;272308;272309;272310;272311;272312;272313	365321;365322;365323;365324;365325;365326;365327;365328;365329;365330	365328			10	
SEMMDDLATDAR	0	Unmodified	1353.5541	0.55406556	1863	P55789	GFER	FAD-linked sulfhydryl oxidase ALR	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	45.052	44.629	2	0.0011931	40112	160511_QHF_FH_JSI10i_1	76.302	59.67			0.7583	0.89077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7583	0.89077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28105000	16943000	11162000	0	0	0	28105000	16943000	11162000	0	0	0	0	0	0	44924	1863	42285	272314;272315	365331;365332	365332			2	
SEMNVNMK	1	Unmodified	951.41539	0.41538723	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	19.168	18.688	2	0.0021929	15762	160511_QHF_FH_JSI11i_1	79.809	63.607			2.3879	2.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3879	2.4605	NaN	1	1	Median	72253000	19596000	52657000	0	0	0	0	0	0	0	0	0	72253000	19596000	52657000	44925	907	42286	272316;272317	365333;365334	365333			2	
SEMSNLDTTLQK	1	Oxidation (M)	1381.6395	0.63950975	5859				yes	yes	0	0	1	0				By MS/MS	1	0	1												1	30.442	29.874	2	0.011251	26816	160511_QHF_FH_JSI12i_1	69.598	28.199	+		0.54837	0.57589	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54837	0.57589	NaN	1	1	Median	137870000	89514000	48352000	0	0	0	0	0	0	0	0	0	137870000	89514000	48352000	44926	5859	42287	272318	365335	365335		2768	1	
SEMTPEELQK	1	Oxidation (M)	1206.5438	0.54381845	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	6.31	5.74	7				3	3					4	5	4	24.691	20.86	2	4.0127E-07	15345	160511_QHF_FH_JSI11i_1	113.74	87.356			1.0921	1.169	39.432	12	0	Median	NaN	NaN	NaN	0	0	Median	0.88463	1.0174	40.312	4	0	Median	1.1083	1.0563	57.98	4	0	Median	1.1526	1.2393	12.846	4	0	Median	727120000	363800000	363320000	0	0	0	170970000	97532000	73438000	280390000	147400000	132990000	275760000	118860000	156900000	44927	2002	42288	272319;272320;272321;272322;272323;272324;272325;272326;272327;272328;272329;272330;272331	365336;365337;365338;365339;365340;365341;365342;365343;365344;365345;365346;365347	365337		1663	12	
SEMTPEELQK	1	Unmodified	1190.5489	0.54890383	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	2	2	33.319	29.205	2	8.8961E-10	26318	160511_QHF_FH_JSI12i_1	137.14	124.55			0.83649	0.83463	15.595	7	0	Median	0.93292	0.76937	NaN	1	0	Median	0.70515	0.82469	1.6948	2	0	Median	1.107	1.0734	11.391	2	0	Median	0.76785	0.82852	14.136	2	0	Median	3440400000	2008200000	1432200000	755930000	429250000	326690000	848470000	522260000	326200000	884060000	508080000	375970000	951900000	548590000	403310000	44928	2002	42288	272332;272333;272334;272335;272336;272337;272338;272339	365348;365349;365350;365351;365352;365353;365354;365355;365356;365357;365358;365359;365360;365361;365362;365363	365351			16	
SEMVPSCPFIYIIR	0	Unmodified	1710.8473	0.84733445	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1		1	2	2	95.709	92.458	2	0.00044559	86492	160511_QHF_FH_JSI11i_2	69.979	44.762			0.97338	1.2456	37.602	3	2	Median	NaN	NaN	NaN	0	0	Median	0.97338	1.2456	NaN	1	0	Median	0.91727	0.92298	NaN	1	1	Median	1.8086	1.9485	NaN	1	1	Median	36850000	18191000	18660000	0	0	0	12343000	7170400	5172700	18624000	9403100	9221200	5882900	1617000	4265900	44929	4487	42289	272340;272341;272342;272343;272344	365364;365365;365366;365367;365368;365369	365366			6	
SENEGTSDGETYIEK	1	Unmodified	1657.6955	0.6955043	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		25.666	25.09	2	1.038E-09	21735	160511_QHF_FH_JSI9i_1	145.6	126.86			1.0001	0.86776	17.047	3	2	Median	1.0796	0.86776	NaN	1	0	Median	0.59324	0.68751	NaN	1	1	Median	1.0001	0.95832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87346000	50355000	36991000	39457000	21038000	18418000	27517000	17833000	9684600	20372000	11484000	8888000	0	0	0	44930	4659	42290	272345;272346;272347	365370;365371;365372	365372			3	
SENENQEQIEESK	1	Unmodified	1562.6696	0.6696239	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.75	4.76	3				1						1	2	1	13.027	11.071	2	5.8824E-41	9306	160511_QHF_FH_JSI11i_1	204.49	168.15			1.2893	1.423	28.481	4	2	Median	NaN	NaN	NaN	0	0	Median	1.4712	1.7036	NaN	1	0	Median	1.5186	1.4481	42.217	2	1	Median	1.1299	1.1886	NaN	1	1	Median	326420000	157270000	169150000	0	0	0	100460000	41639000	58818000	86710000	50266000	36444000	139250000	65371000	73884000	44931	4142	42291	272348;272349;272350;272351	365373;365374;365375;365376;365377	365373			5	
SENEPIENEAAK	1	Unmodified	1329.6048	0.6048388	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	18.707	16.041	2	3.255E-11	13572	160511_QHF_FH_JSI10i_1	152.07	121.5			1.0027	1.0351	8.2827	6	0	Median	1.1263	0.91205	NaN	1	0	Median	0.92749	1.0986	NaN	1	0	Median	1.1153	1.0588	8.9303	2	0	Median	0.95179	1.0215	7.6059	2	0	Median	315480000	166730000	148750000	69056000	30560000	38496000	95457000	53561000	41897000	71037000	34338000	36699000	79932000	48274000	31657000	44932	4122	42292	272352;272353;272354;272355;272356;272357	365378;365379;365380;365381;365382;365383;365384;365385;365386;365387;365388	365384			11	
SENESEAARR	0	Unmodified	1147.5218	0.52177787	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			4.5856	4.1786	2	0.010493	2153	160511_QHF_FH_JSI10i_2	47.853	26.906			1.3693	1.6889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3693	1.6889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46804000	17563000	29241000	0	0	0	46804000	17563000	29241000	0	0	0	0	0	0	44933	507	42293	272358	365389	365389			1	
SENESLNQESK	1	Unmodified	1263.5579	0.55788861	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	8.7836	8.4328	2	0.022651	6005	160511_QHF_FH_JSI9i_1	58.699	45.662			0.9373	0.8171	4.7729	4	0	Linear	0.96941	0.78828	NaN	1	0	Median	0.65102	0.77506	NaN	1	0	Median	0.86771	0.84699	NaN	1	0	Median	0.81149	0.8495	NaN	1	0	Median	203280000	101690000	101590000	55158000	22190000	32969000	43673000	27055000	16619000	53740000	27195000	26545000	50711000	25256000	25455000	44934	3312	42294	272359;272360;272361;272362	365390	365390			0	
SENFEELLK	1	Unmodified	1107.5448	0.54480473	1321	P29373	CRABP2	Cellular retinoic acid-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.262	61.627	2	0.00072962	55754	160511_QHF_FH_JSI11i_1	86.136	36.009			1.0612	0.7939	25.541	4	1	Linear	0.91657	0.77864	NaN	1	0	Median	0.69603	0.80946	NaN	1	0	Median	0.69385	0.66143	NaN	1	1	Median	1.1286	1.2072	NaN	1	0	Median	133000000	71427000	61572000	29163000	15365000	13798000	29062000	17563000	11499000	38381000	20971000	17410000	36394000	17528000	18866000	44935	1321	42295	272363;272364;272365;272366	365391;365392;365393;365394;365395	365391			5	
SENGLEFTSSGSANTETTK	1	Unmodified	1958.8705	0.87050855	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.788	10	3	3							3	5	4	4	36.791	36.1	2;3	0	32591	160511_QHF_FH_JSI11i_1	380.59	338.19			0.98431	0.99643	8.5162	11	1	Median	1.1529	0.94002	5.1998	2	0	Median	0.90478	1.0511	6.1381	3	1	Plateau	0.97901	0.93704	4.7692	3	0	Plateau	0.99638	1.0877	1.5046	3	0	Median	4596700000	2269600000	2327000000	639230000	288320000	350910000	1369800000	716330000	653510000	1337100000	640180000	696970000	1250500000	624790000	625660000	44936	1195	42296	272367;272368;272369;272370;272371;272372;272373;272374;272375;272376;272377;272378;272379;272380;272381;272382	365396;365397;365398;365399;365400;365401;365402;365403;365404;365405;365406;365407;365408;365409;365410;365411;365412;365413;365414;365415;365416;365417;365418;365419;365420;365421;365422;365423;365424;365425;365426;365427;365428;365429;365430;365431	365399			36	
SENISPEEEYK	1	Unmodified	1323.583	0.58304073	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.11	25.561	2	0.00027687	22073	160511_QHF_FH_JSI9i_1	84.658	64.329			5.1093	5.4585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.1093	5.4585	NaN	1	1	Median	106310000	22105000	84208000	0	0	0	0	0	0	0	0	0	106310000	22105000	84208000	44937	5507	42297	272383;272384	365432;365433	365433			2	
SENLDNPIQTVSLGQSLFFHFPPLLR	0	Unmodified	2968.5447	0.54469215	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0		By MS/MS			16	0									1		1			97.777	92.057	3	1.3516E-34	53684	160513_QHF_FH_JSI10Kac_6	154.45	138.56			0.6955	0.80495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6955	0.80495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191200000	112570000	78629000	0	0	0	191200000	112570000	78629000	0	0	0	0	0	0	44938	2638;2895	42298	272385	365434	365434			1	
SENLGQGDKPDYFSSVATVVYLR	1	Unmodified	2544.2496	0.24963234	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		88.052	87.551	3	9.713E-07	77028	160511_QHF_FH_JSI11i_2	67.11	53.654			0.78485	0.71856	17.059	2	2	Median	0.7554	0.63691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81545	0.81069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52495000	28868000	23627000	22292000	12711000	9580700	0	0	0	30203000	16157000	14046000	0	0	0	44939	1293	42299	272386;272387	365435;365436	365436			2	
SENLGQGDKPDYFSSVATVVYLRK	2	Unmodified	2672.3446	0.34459536	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	2		By MS/MS			16	0									2		2			78.713	72.965	4	1.4515E-08	39816	160513_QHF_FH_JSI10Kac_6	130.65	104.23			0.78175	0.90703	5.4213	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78175	0.90703	5.4213	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	384770000	198460000	186310000	0	0	0	384770000	198460000	186310000	0	0	0	0	0	0	44940	1293	42300	272388;272389	365437;365438	365438			2	
SENNSSNSDIVHVEK	1	Unmodified	1657.7544	0.75435658	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	19.057	18.56	3	3.24E-05	15676	160511_QHF_FH_JSI9i_1	108.77	98.979			1.2107	1.3543	19.804	4	1	Median	2.0218	1.6374	NaN	1	1	Median	1.2787	1.5152	NaN	1	0	Median	1.0907	1.0666	NaN	1	0	Median	1.1463	1.2105	NaN	1	0	Median	226950000	106070000	120880000	50236000	16164000	34072000	58924000	26445000	32479000	56364000	31148000	25217000	61425000	32317000	29108000	44941	4519	42301	272390;272391;272392;272393	365439;365440	365440			2	
SENQEFYQDTFGQQWK	1	Unmodified	2033.8755	0.87553435	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	67.517	66.904	2	1.7776E-11	60950	160511_QHF_FH_JSI12i_1	111.79	96.762			0.82545	0.84394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82545	0.84394	NaN	1	1	Median	26094000	14448000	11645000	0	0	0	0	0	0	0	0	0	26094000	14448000	11645000	44942	423	42302	272394;272395	365441;365442	365442			2	
SENVDVGKPALGK	2	Acetyl (K)	1354.7092	0.70924429	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.452					2	5					3	2	2	53.629	44.255	2	6.633E-06	23202	160513_QHF_FH_JSI10Kac_3	110.86	84.343			0.92392	0.48379	132.15	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.87854	1.0226	NaN	1	0	Median	14.556	13.845	NaN	1	1	Median	0.90463	0.96924	6.7107	2	0	Median	26979000	15410000	11570000	0	0	0	9436400	6164500	3271900	4080800	2273200	1807600	13462000	6971900	6490200	44943	3819	42303	272396;272397;272398;272399;272400;272401;272402	365443;365444;365445;365446;365447;365448;365449;365450;365451	365448	2951		9	
SENVDVGKPALGK	2	Unmodified	1312.6987	0.69867961	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				27.851	26.816	3	0.033796	23140	160511_QHF_FH_JSI9i_2	35.763	12.537			1.1579	1.0147	NaN	1	1	Median	1.1579	1.0147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33374000	16836000	16538000	33374000	16836000	16538000	0	0	0	0	0	0	0	0	0	44944	3819	42303	272403	365452	365452			1	
SENVQDLLLLDVAPLSLGLETAGGVMTALIK	1	Unmodified	3179.7363	0.73631725	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.74		3	1						6	3	4	2	1	104.89	100.34	2;3;4	7.6039E-184	58629	160513_QHF_FH_JSI10Kac_6	358.02	332.19			0.86564	0.9551	10.845	9	1	Median	1.2087	1.0176	9.5241	3	1	Median	0.74299	0.88983	9.6023	4	0	Median	1.0377	1.076	NaN	1	0	Median	0.86564	0.91482	NaN	1	0	Median	1894100000	1055600000	838530000	248100000	107790000	140310000	1332400000	796210000	536190000	42377000	19222000	23155000	271240000	132360000	138880000	44945	954	42304	272404;272405;272406;272407;272408;272409;272410;272411;272412;272413	365453;365454;365455;365456;365457;365458;365459;365460;365461;365462;365463;365464;365465;365466;365467;365468;365469;365470	365468			18	
SENVQDLLLLDVTPLSLGIETAGGVMTVLIK	1	Unmodified	3237.7782	0.77818207	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.14	6.81		3	1						3	3	4			104.78	101.79	2;3	6.4307E-162	58502	160513_QHF_FH_JSI10Kac_6	342.42	288.19			1.0676	1.1979	13.434	7	3	Median	1.3575	1.1728	5.8369	3	1	Plateau	0.9521	1.1464	17.239	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	316470000	147230000	169250000	71012000	23012000	48001000	245460000	124210000	121250000	0	0	0	0	0	0	44946	985	42305	272414;272415;272416;272417;272418;272419;272420	365471;365472;365473;365474;365475;365476;365477;365478;365479;365480;365481;365482	365482			12	
SEPAPDSHPHLSPEALGYFR	0	Unmodified	2206.0443	0.044331016	3314	Q86U38	NOP9	Nucleolar protein 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.273	59.273	3	0.0095424	52633	160511_QHF_FH_JSI11i_3	37.112	20.989			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44947	3314	42306	272421	365483	365483			1	
SEPFSPSLRPEPPK	1	Unmodified	1566.8042	0.80420731	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	45.697	45.456	3	0.0027762	38821	160511_QHF_FH_JSI12i_3	59.607	37.849			0.83333	0.84338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83333	0.84338	NaN	1	1	Median	26192000	12103000	14088000	0	0	0	0	0	0	0	0	0	26192000	12103000	14088000	44948	457	42307	272422;272423	365484;365485	365485			2	
SEPGQVK	1	Unmodified	743.38137	0.38136821	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	5.5603	5.2078	2	0.010614	3159	160511_QHF_FH_JSI11i_1	64.776	29.671			1.1133	0.97809	5.6341	3	0	Plateau	1.2219	1.0115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1133	1.0834	NaN	1	0	Median	0.91297	0.9689	NaN	1	0	Median	1429300000	672880000	756380000	529230000	220520000	308700000	0	0	0	265150000	117640000	147510000	634890000	334720000	300160000	44949	1054	42308	272424;272425;272426;272427;272428	365486;365487;365488;365489	365486			4	
SEPHSLSSEALMR	0	Unmodified	1442.6824	0.68237762	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								3	2	3	3	33.537	32.665	2;3	1.5419E-22	27717	160511_QHF_FH_JSI11i_2	144.28	130.32			1.116	1.1358	8.1015	9	6	Median	1.3546	1.1449	4.6468	2	1	Median	1.0295	1.2531	13.899	2	2	Median	1.3212	1.3253	8.7085	3	2	Plateau	0.99225	1.1216	1.3427	2	1	Median	759060000	366860000	392200000	68996000	26265000	42732000	224960000	114870000	110090000	332510000	154390000	178120000	132600000	71338000	61264000	44950	4939	42309	272429;272430;272431;272432;272433;272434;272435;272436;272437;272438;272439	365490;365491;365492;365493;365494;365495;365496;365497;365498;365499;365500;365501;365502	365498			13	
SEPIPESNDGPVK	1	Unmodified	1367.6569	0.65687437	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.84	5.28	10	5	4	1	5	6				5	6	9	11	33.435	28.723	2;3	1.1359E-30	26506	160511_QHF_FH_JSI10i_1	189.72	132.13			1.0189	1.0108	24.864	27	5	Median	1.0808	0.90522	33.074	5	1	Median	0.7501	0.88617	13.921	6	0	Median	1.1151	1.0847	27.807	7	1	Median	1.0374	1.1381	16.85	9	3	Median	14144000000	6893100000	7250900000	2943500000	1417700000	1525900000	3539200000	1844400000	1694700000	3706200000	1706600000	1999600000	3955200000	1924400000	2030700000	44951	1344	42310	272440;272441;272442;272443;272444;272445;272446;272447;272448;272449;272450;272451;272452;272453;272454;272455;272456;272457;272458;272459;272460;272461;272462;272463;272464;272465;272466;272467;272468;272469;272470	365503;365504;365505;365506;365507;365508;365509;365510;365511;365512;365513;365514;365515;365516;365517;365518;365519;365520;365521;365522;365523;365524;365525;365526;365527;365528;365529;365530;365531;365532;365533;365534;365535;365536;365537;365538;365539;365540;365541;365542;365543;365544;365545;365546;365547;365548;365549;365550;365551;365552;365553;365554;365555;365556;365557	365528			55	
SEPKPGLPEDLQK	2	Unmodified	1436.7511	0.75110911	4353	Q9BQ75	CMSS1	Protein CMSS1	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	1.25	0.433	3	1								1	1	1	1	36.65	36.087	3	3.4977E-05	32807	160511_QHF_FH_JSI12i_1	84.566	55.267			1.0077	1.0092	8.0764	4	0	Median	1.2223	1.0339	NaN	1	0	Median	0.98917	1.1483	NaN	1	0	Median	1.0265	0.98497	NaN	1	0	Median	0.89825	0.95475	NaN	1	0	Median	233150000	121780000	111380000	39547000	18316000	21231000	70872000	38712000	32160000	73064000	36032000	37032000	49669000	28716000	20953000	44952	4353	42311	272471;272472;272473;272474	365558	365558			1	
SEPQNLGGAAGR	0	Unmodified	1155.5632	0.56324876	1931	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.608	14.154	2	1.7326E-05	11512	160511_QHF_FH_JSI9i_1	112.71	91.247			0.83338	0.84362	6.9421	4	0	Median	0.96998	0.80592	NaN	1	0	Median	0.79574	0.94799	NaN	1	0	Median	0.87014	0.84636	NaN	1	0	Median	0.79817	0.8409	NaN	1	0	Median	742090000	368470000	373620000	166000000	78796000	87206000	182600000	92471000	90126000	169040000	78038000	91003000	224450000	119160000	105280000	44953	1931	42312	272475;272476;272477;272478	365559;365560;365561;365562;365563;365564;365565;365566	365565			8	
SEPQYDHTAGSSQSLSFPK	1	Unmodified	2064.9389	0.93886289	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		43.548	43.065	3	0.00072934	37021	160511_QHF_FH_JSI11i_2	53.779	44.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44954	5472	42313	272479	365567	365567			1	
SEPQYFSSAKYAK	2	Acetyl (K)	1546.7304	0.73037367	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			57.023	46.384	2	0.036233	25636	160513_QHF_FH_JSI10Kac_4	51.092	26.237			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	917780	0	917780	0	0	0	917780	0	917780	0	0	0	0	0	0	44955	2204	42314	272480	365568	365568			1	
SEPSAGIPK	1	Unmodified	884.46035	0.46034682	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	18.969	18.471	2	0.010434	15605	160511_QHF_FH_JSI9i_1	49.96	33.807			0.56388	0.42329	24.217	4	0	Linear	0.7706	0.63972	NaN	1	0	Median	0.37106	0.43774	NaN	1	0	Median	0.46352	0.44977	NaN	1	0	Median	0.68597	0.70373	NaN	1	0	Median	271420000	171940000	99472000	57219000	32081000	25138000	83138000	59833000	23305000	76535000	48997000	27538000	54525000	31033000	23492000	44956	5646	42315	272481;272482;272483;272484	365569	365569			1	
SEPTQALELTEDDIK	1	Unmodified	1687.8152	0.81522551	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	64.212	63.769	2	9.2108E-18	58104	160511_QHF_FH_JSI12i_1	129.71	85.389			0.56417	0.53743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56417	0.53743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21743000	15234000	6508300	0	0	0	0	0	0	21743000	15234000	6508300	0	0	0	44957	328	42316	272485;272486;272487	365570;365571;365572;365573	365572			4	
SEPVSEIETSVVK	1	Unmodified	1402.7191	0.71914028	4828	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	54.093	53.43	2	0.0047926	48561	160511_QHF_FH_JSI12i_1	62.408	44.934			0.54133	0.57732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54133	0.57732	NaN	1	1	Median	23219000	15804000	7414800	0	0	0	0	0	0	0	0	0	23219000	15804000	7414800	44958	4828	42317	272488;272489	365574;365575	365574			2	
SEQDQAENEGEDSAVLMER	0	Unmodified	2135.8913	0.89132035	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	42.16	41.513	2;3	3.5922E-237	37504	160511_QHF_FH_JSI11i_1	430.74	421.69			1.0488	1.0836	6.1377	8	0	Median	1.4097	1.1733	6.7574	2	0	Median	0.94084	1.1008	5.6814	2	0	Median	1.0587	1.0436	0.56956	2	0	Median	1.0106	1.0678	5.5289	2	0	Median	2057400000	1044000000	1013400000	230870000	97796000	133070000	591370000	305190000	286180000	651270000	329160000	322120000	583850000	311850000	271990000	44959	40	42318	272490;272491;272492;272493;272494;272495;272496;272497;272498	365576;365577;365578;365579;365580;365581;365582;365583;365584;365585;365586;365587;365588;365589;365590;365591;365592;365593	365577			18	
SEQDQAENEGEDSAVLMER	0	Oxidation (M)	2151.8862	0.88623497	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	2	1	36.44	35.634	2;3	1.294E-53	36838	160511_QHF_FH_JSI9i_1	216.71	168.94			1.3273	1.1906	18.68	6	2	Median	1.4218	1.1447	22.612	3	1	Median	0.88189	1.009	NaN	1	0	Median	1.5117	1.4596	NaN	1	1	Median	1.2391	1.2385	NaN	1	0	Median	151240000	64343000	86901000	80157000	31419000	48739000	26566000	14504000	12062000	19374000	8602600	10772000	25147000	9818800	15328000	44960	40	42318	272499;272500;272501;272502;272503;272504;272505	365594;365595;365596;365597;365598;365599;365600;365601;365602	365601		12	9	
SEQEDEVLLVSSSR	0	Unmodified	1576.758	0.75804498	0	A0A024RBG1;Q9NZJ9	NUDT4	Diphosphoinositol polyphosphate phosphohydrolase 2	yes	no	0	0	0	0		By MS/MS			1	0	1										1			49.489	49.069	2	0.00012552	44123	160511_QHF_FH_JSI10i_1	112.44	75.753			0.9099	1.0314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9099	1.0314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31062000	13590000	17472000	0	0	0	31062000	13590000	17472000	0	0	0	0	0	0	44961	0	42319	272506	365603	365603			1	
SEQEEYEAEGIAWEPVQYFNNK	1	Unmodified	2659.1714	0.1714416	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	91.211	90.904	3	5.4992E-07	82453	160511_QHF_FH_JSI10i_1	77.045	74.468			0.7824	1.0731	25.387	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.89289	1.0374	NaN	1	0	Median	0.76259	0.73929	31.002	2	1	Median	0.68559	0.70094	NaN	1	1	Median	118580000	66224000	52351000	0	0	0	49003000	26008000	22995000	43487000	25399000	18088000	26086000	14818000	11268000	44962	100	42320	272507;272508;272509;272510	365604;365605;365606;365607	365607			4	
SEQEFQEQLESAR	0	Unmodified	1579.7114	0.71142914	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.952	44.559	2	0.00058362	40296	160511_QHF_FH_JSI11i_1	68.548	39.821			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44963	4223	42321	272511	365608	365608			1	
SEQEFQEQLESARR	0	Unmodified	1735.8125	0.81254017	4223	Q96RQ3	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			39.456	38.49	3	0.060512	33853	160511_QHF_FH_JSI10i_2	19.271	13.108			0.59674	0.73961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59674	0.73961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28221000	18842000	9379700	0	0	0	28221000	18842000	9379700	0	0	0	0	0	0	44964	4223	42322	272512	365609	365609			1	
SEQFINLR	0	Unmodified	1005.5243	0.52434406	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		45.103	44.374	2	0.0014125	39191	160511_QHF_FH_JSI10i_2	84.916	43.413			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44965	871	42323	272513;272514	365610;365611	365611			2	
SEQIIADLK	1	Unmodified	1015.555	0.55497548	5842				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.61	22.095	3	0.017831	19420	160511_QHF_FH_JSI12i_1	38.086	4.7084	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10164000	10164000	0	0	0	0	0	0	0	0	0	0	10164000	10164000	0	44966	5842	42324	272515	365612	365612			1	
SEQLEELFSQVGPVK	1	Unmodified	1688.8621	0.86211612	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	88.972	88.322	2;3	7.3209E-05	77693	160511_QHF_FH_JSI11i_2	79.81	60.056			0.88132	1.0052	26.664	6	1	Median	1.4566	1.2479	NaN	1	0	Median	0.86055	1.0993	NaN	1	0	Median	0.74696	0.73886	28.709	2	1	Median	0.95199	1.0473	18.452	2	0	Median	98195000	51791000	46404000	21022000	9750700	11272000	13481000	6012600	7468400	35483000	19587000	15895000	28208000	16440000	11769000	44967	5058	42325	272516;272517;272518;272519;272520;272521	365613;365614;365615;365616;365617;365618	365616			4	
SEQLPKK	2	Unmodified	828.47052	0.47051757	2158	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	7.1228	6.8026	2;3	0.0087304	4202	160511_QHF_FH_JSI12i_3	49.358	25.16			1.1303	1.0942	21.317	7	0	Median	1.2221	1.0348	NaN	1	0	Median	0.88978	1.0926	31.695	2	0	Median	1.1171	1.1178	3.0129	2	0	Median	1.188	1.2413	37.87	2	0	Median	504110000	246750000	257370000	76095000	38655000	37440000	150780000	90126000	60656000	126680000	64684000	61998000	150550000	53280000	97275000	44968	2158	42326	272522;272523;272524;272525;272526;272527;272528	365619;365620;365621;365622	365622			4	
SEQPSLVIQK	1	Unmodified	1127.6186	0.61863837	43	CON__ENSEMBL:ENSBTAP00000032840			yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.667	35.059	2	0.0026778	31372	160511_QHF_FH_JSI10i_1	58.433	31.179		+	1.0665	1.0339	24.925	4	1	Median	0.95532	0.78463	NaN	1	0	Median	1.197	1.4231	NaN	1	0	Median	1.1907	1.1042	NaN	1	0	Median	0.93195	0.96815	NaN	1	1	Median	235250000	111850000	123400000	58311000	29470000	28841000	55293000	28016000	27277000	68381000	26733000	41648000	53262000	27631000	25631000	44969	43	42327	272529;272530;272531;272532	365623;365624;365625	365625			3	
SEQPTLVTASKDGYFK	2	Acetyl (K)	1811.8941	0.89414453	3415	Q8IWA0	WDR75	WD repeat-containing protein 75	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.498						6	5				4	3	4	74.234	64.735	2;3	7.868E-17	33887	160513_QHF_FH_JSI10Kac_4	140.84	122.38			0.86471	0.97865	21.051	10	0	Median	NaN	NaN	NaN	0	0	Median	0.74299	0.88712	13.706	4	0	Median	0.84796	0.79045	45.971	2	0	Median	0.94646	1.0436	7.3876	4	0	Median	111760000	58078000	53681000	0	0	0	44438000	24726000	19712000	5729200	2188100	3541100	61592000	31164000	30428000	44970	3415	42328	272533;272534;272535;272536;272537;272538;272539;272540;272541;272542;272543	365626;365627;365628;365629;365630;365631;365632;365633;365634;365635;365636;365637;365638;365639;365640;365641;365642	365629	2859		17	
SEQSICQAR	0	Acetyl (Protein N-term)	1119.4979	0.49787131	3570;5318	Q8N8S7;Q9UI08	ENAH;EVL	Protein enabled homolog;Ena/VASP-like protein	no	no	0	1	0	0		By MS/MS	By MS/MS		6	5	1			1							1	1		22.624	18.745	2	0.0060803	16571	160511_QHF_FH_JSI10i_1	54.549	46.28			0.5508	0.61777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5508	0.61777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33337000	21111000	12225000	0	0	0	33337000	21111000	12225000	0	0	0	0	0	0	44971	3570;5318	42329	272544;272545	365643;365644	365643			1	
SEQSVAQLEEEK	1	Unmodified	1375.6467	0.64670362	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	30.61	29.944	2	6.8899E-11	26576	160511_QHF_FH_JSI10i_1	190.53	148.18			0.81493	0.87704	23.343	6	6	Median	1.0082	0.8365	27.419	2	2	Median	0.91589	1.0822	19.935	2	2	Median	0.82389	0.8184	NaN	1	1	Median	0.67171	0.68658	NaN	1	1	Median	336350000	180080000	156270000	72722000	30609000	42113000	105760000	54677000	51084000	103000000	64832000	38171000	54867000	29966000	24901000	44972	2258	42330	272546;272547;272548;272549;272550;272551	365645;365646;365647;365648;365649;365650	365647			6	
SEQSVAQLEEEKK	2	Unmodified	1503.7417	0.74166663	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		23.47	22.732	3	0.00010567	18860	160511_QHF_FH_JSI11i_2	90.707	64.166			0.36978	0.42687	43.593	3	3	Plateau	1.0522	0.89038	NaN	1	1	Median	0.49019	0.60512	NaN	1	1	Median	0.35808	0.37302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63666000	41967000	21699000	22027000	11587000	10439000	19108000	14663000	4445600	22531000	15717000	6814100	0	0	0	44973	2258	42331	272552;272553;272554	365651;365652;365653;365654	365653			4	
SEQVQGAQK	1	Unmodified	973.48287	0.48287317	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	5.2364	4.8487	2	0.00012255	2843	160511_QHF_FH_JSI11i_1	95.502	74.802			1.0919	1.0793	24.479	4	1	Median	1.0043	0.85806	23.27	2	1	Median	0.98182	1.1516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.236	1.2788	NaN	1	0	Median	257350000	116410000	140940000	96040000	43525000	52515000	88158000	42645000	45512000	0	0	0	73151000	30238000	42913000	44974	1230	42332	272555;272556;272557;272558;272559	365655;365656;365657;365658	365655			3	
SERELLEIVK	1	Unmodified	1214.6871	0.68705229	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	53.074	52.104	3	0.00013054	44997	160511_QHF_FH_JSI12i_2	75.416	59.162			0.74959	0.87552	60.362	4	3	Median	0.58555	0.50631	NaN	1	1	Median	0.6791	0.83527	NaN	1	1	Median	2.0735	2.1663	NaN	1	1	Median	0.82741	0.91771	NaN	1	0	Median	325250000	188820000	136430000	58532000	39165000	19368000	132820000	91952000	40865000	78421000	28038000	50382000	55475000	29663000	25813000	44975	1370	42333	272560;272561;272562;272563;272564	365659;365660;365661;365662;365663	365659			5	
SERELLEIVKK	2	Unmodified	1342.782	0.78201531	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		47.02	46.237	3;4	0.00052942	40190	160511_QHF_FH_JSI11i_3	74.76	57.393			0.60389	0.62991	0.48576	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53803	0.63208	NaN	1	1	Median	0.6778	0.62775	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145300000	81638000	63665000	0	0	0	56842000	35626000	21216000	88462000	46012000	42449000	0	0	0	44976	1370	42334	272565;272566	365664;365665	365664			2	
SERPPTILMTEEPSSPK	1	Unmodified	1897.9455	0.94552817	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		48.391	47.719	3	6.3833E-05	42129	160511_QHF_FH_JSI10i_2	75.564	66.149			0.85901	0.72582	17.899	3	2	Median	0.85901	0.72582	NaN	1	1	Median	0.51084	0.62462	NaN	1	0	Median	0.95007	0.89216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189670000	107360000	82306000	52831000	29163000	23668000	51681000	35574000	16107000	85153000	42623000	42531000	0	0	0	44977	3003	42335	272567;272568;272569	365666;365667;365668	365668			3	
SESAPTLHPYSPLSPK	1	Unmodified	1709.8625	0.86245047	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2	0		4								1	1	1	1	48.274	47.291	3	5.9654E-06	41661	160511_QHF_FH_JSI10i_2	108.06	93.717			0.618	0.72868	21.082	4	0	Median	0.58513	0.50876	NaN	1	0	Median	0.63365	0.78576	NaN	1	0	Median	0.79963	0.80457	NaN	1	0	Median	0.60273	0.67575	NaN	1	0	Median	363940000	223330000	140610000	56675000	35564000	21111000	87395000	57322000	30073000	129330000	80848000	48477000	90544000	49595000	40949000	44978	3760	42336	272570;272571;272572;272573	365669	365669			1	
SESDLEETEPVVIPR	0	Unmodified	1698.8312	0.83120992	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	60.225	59.58	2	6.9544E-35	54086	160511_QHF_FH_JSI11i_1	164.81	147.79			0.83094	0.82371	22.656	4	3	Median	1.0582	0.86918	NaN	1	0	Median	0.65441	0.78061	NaN	1	1	Median	1.0551	1.0071	NaN	1	1	Median	0.57612	0.58916	NaN	1	1	Median	206800000	114760000	92037000	58308000	28640000	29668000	44385000	25497000	18889000	46770000	19863000	26907000	57338000	40764000	16574000	44979	2197	42337	272574;272575;272576;272577;272578	365670;365671;365672;365673;365674	365671			5	
SESELGR	0	Acetyl (Protein N-term)	818.37701	0.37701112	2972	Q5TGZ0	MINOS1	MICOS complex subunit MIC10	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			16.005	15.76	1	0.014306	13430	160511_QHF_FH_JSI10i_1	44.611	44.611			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44980	2972	42338	272579	365675	365675			1	
SESELGRK	1	Acetyl (Protein N-term)	946.47197	0.47197413	2972	Q5TGZ0	MINOS1	MICOS complex subunit MIC10	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	3										2		1	11.375	11.139	2	6.2011E-05	8875	160511_QHF_FH_JSI10i_1	110.81	98.451			0.42603	0.50462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.42603	0.50462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95429000	39458000	55970000	0	0	0	95429000	39458000	55970000	0	0	0	0	0	0	44981	2972	42339	272580;272581;272582	365676;365677;365678	365678			3	
SESEMETDSGVPQNTGMK	1	Unmodified	1925.7983	0.79827159	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.658	32.273	2	7.1627E-82	28888	160511_QHF_FH_JSI11i_1	250.8	240.47			0.81952	0.8586	21.426	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73365	0.82103	NaN	1	0	Median	1.2579	1.2144	NaN	1	0	Median	0.81952	0.8586	NaN	1	0	Median	83290000	43628000	39661000	0	0	0	33218000	17820000	15399000	28873000	13150000	15723000	21198000	12658000	8540100	44982	2831	42340	272583;272584;272585;272586	365679;365680;365681;365682;365683;365684;365685	365679			7	
SESGHSQPGLYGIER	0	Acetyl (Protein N-term)	1657.7696	0.76961272	4645	Q9H0W8	SMG9	Protein SMG9	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.711	40.075	2	5.3673E-05	35992	160511_QHF_FH_JSI11i_1	105.65	98.082			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44983	4645	42341	272587;272588;272589;272590	365686;365687;365688;365689	365686			4	
SESGYGFNVR	0	Unmodified	1114.5043	0.5043369	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.771	31.847	2	0.00018193	27728	160511_QHF_FH_JSI9i_2	82.452	60.925			1.0426	1.1186	9.8352	4	0	Median	1.0718	0.94305	NaN	1	0	Median	0.98653	1.1816	NaN	1	0	Median	1.0993	1.1308	NaN	1	0	Median	1.0142	1.1066	NaN	1	0	Median	170340000	81708000	88629000	30479000	14060000	16419000	42682000	21932000	20750000	58070000	29307000	28763000	39107000	16410000	22697000	44984	4164	42342	272591;272592;272593;272594	365690;365691;365692;365693;365694;365695;365696	365693			7	
SESHTDLTFSR	0	Unmodified	1278.584	0.58404378	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								3	1	2	2	22.421	21.495	2;3	3.2147E-05	18333	160511_QHF_FH_JSI9i_2	99.815	71.641			1.3879	1.2739	30.925	6	2	Median	1.4765	1.2739	11.933	2	1	Median	0.85206	1.0503	NaN	1	0	Median	1.5669	1.6297	NaN	1	0	Median	0.9351	1.063	56.251	2	1	Median	209150000	98104000	111050000	64670000	35775000	28895000	47163000	23419000	23744000	36408000	10744000	25664000	60913000	28166000	32747000	44985	264	42343	272595;272596;272597;272598;272599;272600;272601;272602	365697;365698;365699;365700;365701;365702;365703;365704;365705;365706;365707	365702			11	
SESHVIQDIALK	1	Unmodified	1338.7143	0.71432967	3704	Q8TCE6	FAM45A	Protein FAM45A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.609	43.223	2	0.015565	37072	160511_QHF_FH_JSI12i_2	51.436	31.649			1.5343	1.604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5343	1.604	NaN	1	1	Median	7066700	2151000	4915700	0	0	0	0	0	0	0	0	0	7066700	2151000	4915700	44986	3704	42344	272603	365708	365708			1	
SESLDPDSSMDTTLILK	1	Unmodified	1850.8819	0.88192486	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			76.99	76.823	2	0.00044642	69702	160511_QHF_FH_JSI10i_1	77.597	58.465			0.6459	0.71443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6459	0.71443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12628000	7997400	4630600	0	0	0	12628000	7997400	4630600	0	0	0	0	0	0	44987	2928	42345	272604	365709	365709			1	
SESLIDASEDSQLEAAIR	0	Unmodified	1932.9276	0.9276295	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	74.713	74.275	2	4.3139E-07	67586	160511_QHF_FH_JSI11i_1	94.551	82.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44988	618	42346	272605;272606	365710;365711	365710			2	
SESNRFPLPFPFPSK	1	Unmodified	1748.8886	0.88860564	4250	Q96SY0	VWA9	von Willebrand factor A domain-containing protein 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		88.972	88.229	3	0.0020307	72211	160511_QHF_FH_JSI9i_3	53.565	47.127			1.0735	1.0316	1.3653	3	0	Median	1.2679	1.0536	NaN	1	0	Median	0.87642	1.0316	NaN	1	0	Median	1.0735	1.0269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52029000	25332000	26697000	16981000	6609100	10371000	16171000	7904300	8267100	18877000	10819000	8058400	0	0	0	44989	4250	42347	272607;272608;272609	365712;365713;365714	365714			3	
SESPDEANVGK	1	Unmodified	1131.5044	0.50439648	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	11.801	9.8054	2	4.883E-10	8418	160511_QHF_FH_JSI12i_1	139.02	102.32			0.60985	0.66822	45.875	4	0	Median	NaN	NaN	NaN	0	0	Median	0.4747	0.564	NaN	1	0	Median	0.32264	0.31215	NaN	1	0	Median	0.78504	0.82272	5.4363	2	0	Median	519310000	330180000	189130000	0	0	0	175240000	123850000	51389000	160690000	95732000	64961000	183370000	110600000	72775000	44990	3660	42348	272610;272611;272612;272613;272614	365715;365716;365717;365718;365719;365720	365717			6	
SESPKEPEQLR	1	Unmodified	1298.6466	0.64664404	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	2	1	3	13.957	13.491	2;3	3.6962E-05	10577	160511_QHF_FH_JSI11i_2	118.4	70.8			0.87361	0.93744	25.891	8	2	Median	1.2422	1.0411	20.673	2	1	Median	0.74857	0.88749	26.281	2	0	Median	0.5917	0.57905	NaN	1	1	Median	0.86468	0.97698	24.641	3	0	Median	437950000	220990000	216960000	108320000	54140000	54184000	126410000	69258000	57151000	49658000	29506000	20152000	153560000	68089000	85471000	44991	936	42349	272615;272616;272617;272618;272619;272620;272621;272622	365721;365722;365723;365724;365725;365726	365724			6	
SESPKEPEQLRK	2	Unmodified	1426.7416	0.74160705	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.41	5.88		9	6					7		5	8	6	3	13.169	9.9183	2;3;4	4.8775E-05	8413	160511_QHF_FH_JSI9i_2	89.959	56.764			0.87854	0.91401	20.93	22	4	Median	1.0949	0.88812	19.739	5	1	Median	0.77973	0.92417	24.372	8	2	Median	0.92299	0.91735	23.568	6	1	Median	0.79175	0.87944	14.141	3	0	Median	9304400000	4903400000	4401000000	1649100000	761790000	887350000	3922900000	2265000000	1657900000	3552400000	1774000000	1778500000	179980000	102650000	77333000	44992	936	42350	272623;272624;272625;272626;272627;272628;272629;272630;272631;272632;272633;272634;272635;272636;272637;272638;272639;272640;272641;272642;272643;272644	365727;365728;365729;365730;365731;365732;365733;365734;365735;365736;365737;365738;365739;365740;365741;365742;365743;365744;365745;365746;365747;365748;365749;365750;365751;365752;365753;365754	365738			25	
SESPKEPEQLRK	2	Acetyl (K)	1468.7522	0.75217174	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	1	2	29.145	20.428	3	4.4656E-05	12669	160513_QHF_FH_JSI12Kac_4	93.959	37.734			0.65429	0.70657	49.165	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94947	1.1463	NaN	1	0	Median	0.43587	0.42882	NaN	1	0	Median	0.65429	0.70657	NaN	1	0	Median	21404000	12626000	8777800	0	0	0	7964500	3900100	4064400	6920100	4863600	2056600	6519000	3862100	2656900	44993	936	42350	272645;272646;272647;272648	365755;365756;365757;365758;365759	365758	697		5	
SESPYQR	0	Unmodified	865.393	0.39299553	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	7.2378	6.902	2	0.013926	4674	160511_QHF_FH_JSI11i_1	67.035	23.911			1.413	1.4089	7.7633	4	0	Median	1.8845	1.5487	NaN	1	0	Median	1.1319	1.294	NaN	1	0	Median	1.434	1.3659	NaN	1	0	Median	1.3924	1.4532	NaN	1	0	Median	444430000	187440000	256990000	109530000	39365000	70168000	117990000	58528000	59460000	106870000	42092000	64776000	110040000	47455000	62584000	44994	3741	42351	272649;272650;272651;272652	365760	365760			1	
SESSGILPNTTDMR	0	Unmodified	1506.6984	0.69842161	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.15	45.746	2	0.0018402	41212	160511_QHF_FH_JSI11i_1	80.834	55.448			0.76746	0.73456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76746	0.73456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32394000	19332000	13062000	0	0	0	0	0	0	32394000	19332000	13062000	0	0	0	44995	3869	42352	272653	365761	365761			1	
SESSSKSSQPLASK	2	Acetyl (K);Acetyl (Protein N-term)	1505.7209	0.72093119	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	1	1	0	1				By MS/MS	11	0				1									1	33.396	24.94	2	0.02885	10851	160513_QHF_FH_JSI12Kacf_1	37.327	21.103			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44996	1109	42353	272654	365762	365762	966		1	
SESTAAAEHK	1	Unmodified	1029.4727	0.47270242	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	3.5822	3.39	2	0.0027646	1850	160511_QHF_FH_JSI12i_1	60.59	34.853			0.66776	0.76961	80.349	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.97707	1.0973	65.536	2	2	Median	3.55	3.4202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37869000	18974000	18895000	0	0	0	31007000	16529000	14478000	6861700	2444600	4417200	0	0	0	44997	2768	42354	272655;272656;272657;272658;272659	365763;365764;365765;365766;365767	365764			5	
SESTENQSYAK	1	Unmodified	1242.5364	0.53642488	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		7.1104	6.9362	2	2.6695E-05	4787	160511_QHF_FH_JSI10i_1	99.568	82.337			1.2444	1.3194	23.029	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96009	1.1211	NaN	1	0	Median	1.6129	1.5527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81187000	40119000	41068000	0	0	0	47831000	24435000	23395000	33357000	15684000	17673000	0	0	0	44998	4226	42355	272660;272661	365768	365768			1	
SESTNHEQQSPQSGK	1	Unmodified	1642.7183	0.71830543	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.5	6.5	2						2			1		1	2	4.8906	0.87264	2;3	1.5707E-06	2222	160511_QHF_FH_JSI9i_1	150.49	114.83			0.93832	0.9794	43.198	4	2	Median	2.5028	2.0442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89586	0.8884	NaN	1	0	Median	0.84044	0.91003	24.179	2	1	Median	62735000	30516000	32218000	17867000	2472900	15394000	0	0	0	3353700	1879000	1474700	41514000	26164000	15349000	44999	1501	42356	272662;272663;272664;272665	365769;365770;365771;365772	365771			4	
SESVPPVTDWAWYK	1	Unmodified	1663.7882	0.7882229	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							4	3	3	2	84.048	83.321	2	6.6309E-31	72191	160511_QHF_FH_JSI12i_2	196.76	173.85			1.0061	1.0197	10.781	10	1	Median	1.1926	1.0046	16.678	4	1	Median	0.85642	1.0289	5.2093	2	0	Median	1.014	0.99667	1.4594	2	0	Median	0.9815	1.0647	0.95163	2	0	Median	4508000000	2185600000	2322400000	983080000	461840000	521250000	1084000000	542370000	541670000	1301100000	635330000	665720000	1139900000	546070000	593780000	45000	1441	42357	272666;272667;272668;272669;272670;272671;272672;272673;272674;272675;272676;272677	365773;365774;365775;365776;365777;365778;365779;365780;365781;365782;365783;365784;365785;365786;365787;365788;365789;365790;365791;365792;365793;365794;365795;365796;365797;365798;365799;365800;365801	365779			29	
SESVVYADIR	0	Unmodified	1137.5666	0.5666028	673	O95297	MPZL1	Myelin protein zero-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2				2	1	2	43.275	37.894	2	6.9585E-05	21383	160513_QHF_FH_JSI10Kac_4	101.9	73.678			0.89162	1.0018	8.7638	4	1	Median	NaN	NaN	NaN	0	0	Median	0.85544	1.0018	9.2484	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96754	1.0005	12.036	2	0	Median	177920000	93799000	84122000	0	0	0	106460000	57792000	48663000	0	0	0	71466000	36007000	35459000	45001	673	42358	272678;272679;272680;272681;272682	365802;365803;365804;365805;365806;365807;365808	365805			7	
SETAPAAPAAAPPAEK	1	Unmodified	1477.7413	0.7412727	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	27.636	26.945	2	6.2327E-15	24572	160511_QHF_FH_JSI12i_1	156.36	3.9638			0.99414	0.98887	14.472	6	1	Median	1.159	0.94128	13.893	2	1	Median	0.92105	1.0716	NaN	1	0	Median	1.0423	0.99902	NaN	1	0	Median	0.81392	0.84613	20.601	2	0	Median	755190000	387520000	367670000	325260000	132700000	192560000	38247000	23558000	14689000	29618000	16434000	13184000	362070000	214820000	147240000	45002	1099	42359	272683;272684;272685;272686;272687;272688	365809;365810;365811;365812;365813;365814;365815;365816	365812			8	
SETAPAAPAAAPPAEK	1	Acetyl (Protein N-term)	1519.7518	0.75183739	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	4.65	7	3	2	4	2					4	6	5	3	36.612	32.952	2;3	6.9738E-25	14953	160513_QHF_FH_JSI12Kacf_1	75.479	8.0221			1.0297	1.0632	64.797	15	2	Median	1.253	1.054	125.13	4	1	Median	0.78961	0.93887	19.193	5	1	Median	1.1958	1.1761	21.135	4	0	Median	1.0152	1.0674	0.55909	2	0	Median	10063000000	4882100000	5180800000	2170300000	1095700000	1074600000	2511700000	1249500000	1262200000	2954800000	1279300000	1675500000	2426200000	1257600000	1168500000	45003	1099	42359	272689;272690;272691;272692;272693;272694;272695;272696;272697;272698;272699;272700;272701;272702;272703;272704;272705;272706	365817;365818;365819;365820;365821;365822;365823;365824;365825;365826;365827;365828;365829;365830;365831;365832;365833;365834;365835;365836;365837;365838;365839;365840	365836			24	
SETAPAAPAAAPPAEKAPVK	2	Acetyl (K);Acetyl (Protein N-term)	1957.0157	0.015656649	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.1	0.35				6	1						3	2	2	62.872	53.409	2;3	4.7976E-45	21536	160513_QHF_FH_JSI10Kac_1	73.834	60.406			0.92189	1.0358	13.714	7	0	Median	NaN	NaN	NaN	0	0	Median	0.86707	0.90373	8.5551	3	0	Plateau	1.2912	1.2747	1.7014	2	0	Median	0.97542	0.99824	5.2243	2	0	Median	744960000	384760000	360200000	0	0	0	308200000	168840000	139360000	141510000	67409000	74101000	295250000	148510000	146740000	45004	1099	42360	272707;272708;272709;272710;272711;272712;272713	365841;365842;365843;365844;365845;365846;365847	365846	950		7	
SETAPAAPAAAPPAEKAPVK	2	Acetyl (K)	1915.0051	0.005091963	1099	P16403	HIST1H1C	Histone H1.2	yes	yes	1	0	0	1				By MS/MS	11.5	0.5				1	1								2	53.586	44.267	3	0.0057456	18154	160513_QHF_FH_JSI12Kacf_1	45.257	39.353			0.94217	0.98697	4.4531	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94217	0.98697	4.4531	2	0	Median	5803600	3194800	2608700	0	0	0	0	0	0	0	0	0	5803600	3194800	2608700	45005	1099	42360	272714;272715	365848;365849	365848	950		2	
SETAPAAPAAPAPAEK	1	Unmodified	1477.7413	0.7412727	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	4.86	3			3	4					1	3	3	3	33.841	27.583	2	8.2803E-30	24313	160511_QHF_FH_JSI10i_1	184.1	5.7709			0.9293	0.98181	25.609	10	5	Median	1.2754	1.0384	NaN	1	0	Median	0.6798	0.7738	42.369	3	2	Median	1.0084	0.98182	10.777	3	1	Median	0.92129	0.9818	10.53	3	2	Median	835230000	394500000	440730000	282800000	113640000	169160000	276150000	139800000	136350000	268480000	137040000	131440000	7802500	4018600	3783900	45006	969	42362	272716;272717;272718;272719;272720;272721;272722;272723;272724;272725	365850;365851;365852;365853;365854;365855;365856;365857;365858;365859;365860;365861;365862;365863	365855			14	
SETAPAAPAAPAPAEK	1	Acetyl (Protein N-term)	1519.7518	0.75183739	969	P10412	HIST1H1E	Histone H1.4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	1	1	2	39.671	37.379	2	1.1445E-23	15301	160513_QHF_FH_JSI12Kacf_1	77.593	8.1425			1.0849	1.05	7.787	5	0	Median	1.2179	1.0223	NaN	1	0	Median	0.84445	1.008	NaN	1	0	Median	1.2324	1.199	NaN	1	0	Median	1.0444	1.1027	6.9185	2	0	Median	8561900000	3944600000	4617300000	1877200000	830580000	1046700000	1908000000	1023100000	884890000	2706000000	1119100000	1586900000	2070700000	971850000	1098900000	45007	969	42362	272726;272727;272728;272729;272730	365864;365865;365866;365867;365868;365869	365869			6	
SETAPAAPAAPAPAEKTPVK	2	Acetyl (K);Acetyl (Protein N-term)	1987.0262	0.026221336	969	P10412	HIST1H1E	Histone H1.4	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.498				6	5						4	2	5	63.607	54.164	2;3	1.1362E-18	21140	160513_QHF_FH_JSI11Kac_1	58.885	43.346			1.0001	1.0378	13.446	9	0	Median	NaN	NaN	NaN	0	0	Median	0.83824	0.87264	7.0478	3	0	Median	1.2564	1.2344	4.0466	2	0	Median	1.0019	1.0424	4.8828	4	0	Median	594820000	304490000	290330000	0	0	0	243440000	136990000	106450000	105210000	47390000	57820000	246170000	120110000	126060000	45008	969	42363	272731;272732;272733;272734;272735;272736;272737;272738;272739;272740;272741	365870;365871;365872;365873;365874;365875;365876;365877;365878;365879;365880	365875	738		11	
SETAPAAPAAPAPAEKTPVK	2	Acetyl (K)	1945.0157	0.015656649	969	P10412	HIST1H1E	Histone H1.4	yes	yes	1	0	0	1			By matching	By MS/MS	11.7	0.471				1	2							1	2	54.522	45.149	3	0.0013369	20451	160513_QHF_FH_JSI12Kac_2	55.453	42.279			0.97932	0.99502	13.72	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1282	1.0964	NaN	1	0	Median	0.85006	0.90302	NaN	1	0	Median	12006000	4764400	7241400	0	0	0	0	0	0	2710400	1322100	1388200	9295400	3442200	5853200	45009	969	42363	272742;272743;272744	365881;365882	365882	738		2	
SETAPAETATPAPVEK	1	Unmodified	1597.7835	0.78353145	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.987	28.393	2	6.9164E-40	25421	160511_QHF_FH_JSI12i_1	198.49	179.71			1.085	1.1709	28.532	4	0	Median	1.7548	1.4521	NaN	1	0	Median	1.0747	1.2912	NaN	1	0	Median	1.0954	1.0618	NaN	1	0	Median	0.74244	0.75629	NaN	1	0	Median	276970000	140650000	136320000	67158000	23883000	43275000	64708000	34715000	29993000	60114000	34053000	26061000	84985000	47995000	36991000	45010	1097	42365	272745;272746;272747;272748	365883;365884;365885;365886;365887;365888	365885			6	
SETAPAETATPAPVEK	1	Acetyl (Protein N-term)	1639.7941	0.79409613	1097	P16401	HIST1H1B	Histone H1.5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	4			4						1	2	2	3	44.088	39.18	2	1.9117E-17	15710	160513_QHF_FH_JSI11Kac_1	85.845	54.66			0.97113	1.0688	103.13	8	1	Median	1.3036	1.0787	NaN	1	0	Median	0.91879	1.0704	0.52282	2	0	Median	1.11	1.0757	3.105	2	0	Median	1.007	1.0712	160.61	3	1	Plateau	3189700000	1617400000	1572400000	544130000	247190000	296950000	846030000	425300000	420730000	916600000	487210000	429390000	882970000	457670000	425290000	45011	1097	42365	272749;272750;272751;272752;272753;272754;272755;272756	365889;365890;365891;365892;365893;365894;365895;365896;365897;365898;365899;365900;365901;365902	365900			14	
SETAPDSYK	1	Unmodified	996.44001	0.4400053	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.748	9.4139	2	0.00060828	6400	160513_QHF_FH_JSI11Kac_3	91.318	68.299			1.102	1.1223	17.236	7	1	Median	1.3467	1.1253	NaN	1	0	Median	0.74816	0.89099	20.157	2	1	Median	1.2483	1.2046	17.06	2	0	Median	1.0729	1.1496	3.403	2	0	Median	882720000	438590000	444130000	206230000	106440000	99784000	223460000	126970000	96491000	216690000	99773000	116920000	236340000	105410000	130930000	45012	2521	42366	272757;272758;272759;272760;272761;272762;272763	365903;365904;365905;365906;365907	365903			5	
SETDLLDIR	0	Unmodified	1060.5401	0.5400537	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	2	1	1	57.735	55.069	2	1.5161E-09	49061	160511_QHF_FH_JSI9i_1	155.07	107.22			0.84987	0.85655	8.2868	5	0	Median	1.1396	0.91233	NaN	1	0	Median	0.66692	0.79808	9.9984	2	0	Median	0.87491	0.85079	NaN	1	0	Median	0.84987	0.90933	NaN	1	0	Median	1080700000	602410000	478330000	244650000	122530000	122120000	278060000	173600000	104460000	294860000	155910000	138950000	263170000	150360000	112800000	45013	1723	42367	272764;272765;272766;272767;272768	365908;365909;365910;365911;365912;365913;365914;365915	365914			8	
SETDTSLIR	0	Unmodified	1020.5088	0.50875357	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	5.19	2					4	3			2	2	2	3	28.405	20.322	2	1.3558E-09	19979	160511_QHF_FH_JSI9i_1	155.1	66.161			1.0008	1.0615	6.0452	9	0	Median	1.2589	1.0096	7.0874	2	0	Median	0.92179	1.0946	4.454	2	0	Median	1.0335	1.0233	5.7457	2	0	Median	1.0008	1.0683	7.3834	3	0	Median	2595700000	1261600000	1334200000	1103800000	498540000	605220000	23007000	12459000	10549000	58797000	26996000	31801000	1410100000	723560000	686590000	45014	1494	42368	272769;272770;272771;272772;272773;272774;272775;272776;272777	365916;365917;365918;365919;365920;365921;365922;365923;365924;365925;365926;365927;365928;365929;365930;365931	365924			16	
SETEDSILHQLFIVR	0	Unmodified	1785.9261	0.92611336	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	91.902	91.375	3	2.197E-05	78877	160511_QHF_FH_JSI12i_2	107.65	96.83			1.1286	1.1574	18.715	4	3	Median	1.3435	1.1664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99084	1.0047	29.141	2	2	Median	1.0444	1.1486	NaN	1	0	Median	73359000	35621000	37738000	12155000	5716200	6439300	0	0	0	39277000	17678000	21598000	21927000	12226000	9700500	45015	5367	42369	272778;272779;272780;272781	365932;365933;365934;365935;365936	365933			5	
SETEEMGDEEVFSWLK	1	Unmodified	1914.8193	0.81932461	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	93.683	93.504	2	5.5026E-05	85097	160511_QHF_FH_JSI11i_1	80.69	74.45			1.7846	1.8285	28.157	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4052	1.4984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2666	2.2313	NaN	1	1	Median	19489000	4441800	15047000	0	0	0	8030700	2247300	5783400	0	0	0	11458000	2194400	9263700	45016	3239	42370	272782;272783;272784	365937;365938;365939;365940	365937			4	
SETELKDTYAR	1	Acetyl (K)	1353.6412	0.64122431	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	42.892	33.921	2	0.0011767	19222	160513_QHF_FH_JSI11Kac_3	85.377	55.568			0.38948	0.3887	76.646	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23498	0.22607	NaN	1	1	Median	0.64558	0.66832	NaN	1	0	Median	4699200	3683900	1015300	0	0	0	0	0	0	3474800	2840800	633920	1224400	843060	381360	45017	2370	42371	272785;272786	365941;365942	365941	2441		2	
SETHGSLEEAMLTVVK	1	Unmodified	1729.8557	0.85565053	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		70.546	69.842	2	0.00010391	61120	160511_QHF_FH_JSI11i_2	84.365	69.393			0.84595	0.86543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84595	0.86543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28734000	18859000	9874800	0	0	0	5522800	5522800	0	23211000	13336000	9874800	0	0	0	45018	2986	42372	272787;272788	365943;365944;365945	365944			3	
SETISVPQEIK	1	Unmodified	1229.6503	0.65033243	760	O96033	MOCS2	Molybdopterin synthase sulfur carrier subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				47.407	46.182	2	1.1247E-05	40976	160511_QHF_FH_JSI9i_1	109.29	89.3			0.37085	0.3022	NaN	1	1	Median	0.37085	0.3022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135210000	98489000	36723000	135210000	98489000	36723000	0	0	0	0	0	0	0	0	0	45019	760	42373	272789	365946	365946			1	
SETITADVNHNLK	1	Unmodified	1440.7209	0.72087161	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1				1	2	2	33.866	29.731	2;3	3.7885E-10	25067	160511_QHF_FH_JSI12i_2	143.96	112.89			0.95184	1.0625	17.514	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87857	0.87172	NaN	1	0	Median	1.037	1.146	10.703	2	0	Median	145250000	66790000	78455000	0	0	0	0	0	0	3117500	2070200	1047300	142130000	64720000	77408000	45020	2728	42374	272790;272791;272792;272793;272794	365947;365948;365949;365950;365951	365947			4	
SETITEEELVGLMNK	1	Unmodified	1691.8288	0.82876708	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	7									3		2	2	84.719	84.115	2;3	8.693E-41	76662	160511_QHF_FH_JSI11i_1	240.21	220.97			0.8231	0.86856	16.327	7	3	Median	1.1304	0.93501	12.188	3	2	Median	NaN	NaN	NaN	0	0	Median	0.74258	0.72197	1.4185	2	1	Median	0.78097	0.81144	9.6214	2	0	Median	326930000	167730000	159200000	113240000	46392000	66847000	0	0	0	138320000	76501000	61823000	75370000	44841000	30529000	45021	1092	42375	272795;272796;272797;272798;272799;272800;272801	365952;365953;365954;365955;365956;365957;365958;365959;365960;365961	365953			9	
SETLLQVFVEMWLHHYSLEMYQK	1	Unmodified	2910.4085	0.40845795	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.264	93.543	4	2.7241E-17	54889	160513_QHF_FH_JSI10Kac_6	120.67	110.13			0.92388	1.1079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92388	1.1079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141690000	74374000	67316000	0	0	0	141690000	74374000	67316000	0	0	0	0	0	0	45022	5104	42376	272802	365962	365962			1	
SETSGPQIK	1	Unmodified	945.47673	0.47672516	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.45	5.45	7	1				2	1			2	4	3	2	11.949	9.6247	1;2	3.6366E-06	7901	160511_QHF_FH_JSI9i_1	122.19	53.272			0.96468	0.94566	15.102	11	1	Median	1.1837	0.97078	6.562	2	0	Median	0.82547	0.96791	15.791	4	0	Median	0.97212	0.94566	6.1527	3	0	Median	0.77913	0.83107	31.092	2	1	Median	5043600000	2586200000	2457400000	1334900000	634270000	700600000	1404500000	755000000	649520000	1304300000	647320000	657000000	999880000	549600000	450280000	45023	5497	42377	272803;272804;272805;272806;272807;272808;272809;272810;272811;272812;272813	365963;365964;365965;365966;365967;365968;365969;365970;365971;365972;365973	365970			10	
SETSGSFEDALLAIVK	1	Unmodified	1665.8461	0.84613171	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.595	10	8	1							3	6	6	4	101.5	101.42	2;3	5.8124E-232	89161	160511_QHF_FH_JSI11i_2	312.85	259.16			0.95277	1.0374	16.808	16	4	Median	1.0094	0.84678	13.5	3	0	Median	0.73518	0.90211	9.7751	6	2	Linear	0.97293	1.1883	22.496	4	1	Linear	0.9879	1.0918	24.65	3	1	Plateau	3052700000	1489400000	1563200000	500430000	250850000	249570000	1010800000	530160000	480670000	722710000	302030000	420670000	818710000	406410000	412300000	45024	932	42378	272814;272815;272816;272817;272818;272819;272820;272821;272822;272823;272824;272825;272826;272827;272828;272829;272830;272831;272832	365974;365975;365976;365977;365978;365979;365980;365981;365982;365983;365984;365985	365985			12	
SETSWESPK	1	Unmodified	1049.4666	0.46655441	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.21	5	1				2	3			2	3	3	3	22.719	18.442	2	1.3024E-06	16097	160511_QHF_FH_JSI12i_1	133.23	123.25			0.92537	0.94589	15.126	10	2	Median	0.91341	0.75831	NaN	1	1	Median	0.76473	0.90718	11.35	3	1	Median	1.143	1.1127	12.881	3	0	Median	0.76564	0.82133	16.041	3	0	Plateau	914960000	488100000	426860000	161700000	73889000	87806000	244280000	152600000	91676000	223130000	119690000	103440000	285850000	141910000	143940000	45025	3323	42379	272833;272834;272835;272836;272837;272838;272839;272840;272841;272842;272843	365986;365987;365988;365989;365990;365991;365992;365993;365994;365995;365996;365997;365998;365999	365988			14	
SEVAAGVK	1	Unmodified	759.41267	0.41266834	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.5	0.5	2	2								1	1	1	1	9.3563	9.0261	2	0.0050585	6719	160511_QHF_FH_JSI10i_1	66.799	16.759			0.84637	1.1223	15.336	4	0	Linear	1.4428	1.2269	NaN	1	0	Median	0.85367	1.0267	NaN	1	0	Median	1.2354	1.2407	NaN	1	0	Median	0.84932	0.90111	NaN	1	0	Median	5102500000	2592800000	2509600000	39296000	15800000	23496000	2484300000	1190700000	1293600000	68599000	33297000	35302000	2510200000	1353000000	1157200000	45026	2175	42380	272844;272845;272846;272847	366000;366001	366001			2	
SEVATLTAAGK	1	Unmodified	1046.5608	0.56078914	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.1	7	1			3	3	5	1	1	3	6	5	7	32.005	26.535	1;2	3.2404E-24	16344	160513_QHF_FH_JSI11Kac_4	186.78	128.82			0.69311	0.75231	64.555	19	13	Median	0.92582	0.79507	60.218	2	1	Median	0.75258	0.88199	63.306	6	5	Median	0.5188	0.50579	70.608	5	4	Median	0.69186	0.72948	75.739	6	3	Median	5662800000	3106800000	2556000000	754670000	300860000	453810000	1724900000	1034300000	690660000	1705000000	873900000	831070000	1478200000	897740000	580500000	45027	1454	42381	272848;272849;272850;272851;272852;272853;272854;272855;272856;272857;272858;272859;272860;272861;272862;272863;272864;272865;272866;272867;272868	366002;366003;366004;366005;366006;366007;366008;366009;366010;366011;366012;366013;366014;366015;366016;366017;366018;366019;366020;366021;366022;366023;366024;366025;366026	366015			24	
SEVDMLK	1	Oxidation (M)	836.39497	0.39496937	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.06	8					6	1			4	2	5	4	20.173	15.514	1;2	0.0051576	5563	160513_QHF_FH_JSI9Kac_3	91.626	36.185			1.1859	1.2003	46.949	14	2	Median	1.177	0.95434	52.986	3	0	Median	1.1369	1.3487	28.609	2	0	Median	1.6296	1.564	58.797	5	2	Median	1.1036	1.2003	12.995	4	0	Median	3561000000	1587000000	1974000000	1200800000	582300000	618480000	466070000	193150000	272910000	1442500000	572490000	870010000	451650000	239100000	212560000	45028	870	42382	272869;272870;272871;272872;272873;272874;272875;272876;272877;272878;272879;272880;272881;272882;272883	366027;366028;366029;366030;366031;366032;366033;366034;366035;366036;366037;366038;366039;366040;366041;366042;366043;366044;366045;366046;366047;366048;366049	366037		411	23	
SEVDMLK	1	Unmodified	820.40005	0.40005474	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.73	7	6				4	3			3	5	7	5	30.226	25.824	2	0.0026172	16070	160513_QHF_FH_JSI11Kac_3	102.71	58.021			0.97966	0.99237	89.076	18	4	Median	1.1296	0.97698	8.1367	3	0	Median	0.76027	0.92706	15.98	4	0	Median	1.0679	1.0608	138.62	6	2	Median	0.91493	1.0088	93.108	5	2	Median	22739000000	11246000000	11493000000	4787100000	1715200000	3071900000	5174500000	2699200000	2475300000	8325000000	4257700000	4067300000	4452200000	2573600000	1878600000	45029	870	42382	272884;272885;272886;272887;272888;272889;272890;272891;272892;272893;272894;272895;272896;272897;272898;272899;272900;272901;272902;272903	366050;366051;366052;366053;366054;366055;366056;366057;366058;366059;366060;366061;366062;366063;366064;366065;366066;366067;366068;366069;366070;366071;366072;366073;366074;366075;366076	366058			27	
SEVDMLKIR	1	Acetyl (K)	1131.5958	0.59579444	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	67.429	56.564	2	0.00060592	30544	160513_QHF_FH_JSI10Kac_4	97.431	68.282			0.58433	0.62764	74.038	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88389	1.0594	NaN	1	0	Median	0.3863	0.37183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102750000	64581000	38172000	0	0	0	60119000	33264000	26855000	42634000	31317000	11317000	0	0	0	45030	870	42383	272904;272905;272906	366077;366078;366079	366077	576		3	
SEVDMLKIR	1	Acetyl (K);Oxidation (M)	1147.5907	0.59070906	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				1	2	2	51.575	41.018	2	0.0015799	24088	160513_QHF_FH_JSI11Kac_4	80.219	46.422			0.48094	0.52127	34.601	5	0	Median	NaN	NaN	NaN	0	0	Median	0.60085	0.7369	NaN	1	0	Median	0.39741	0.38863	12.062	2	0	Median	0.59495	0.64393	29.885	2	0	Median	42330000	27211000	15119000	0	0	0	8519200	5188200	3330900	18793000	13694000	5098300	15018000	8328200	6689800	45031	870	42383	272907;272908;272909;272910;272911	366080;366081;366082;366083	366081	576	411	3	
SEVELAAALSDK	1	Unmodified	1231.6296	0.62959699	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				57.253	56.102	2	0.0013216	49827	160511_QHF_FH_JSI9i_1	65.842	43.605			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45032	2207	42384	272912	366084	366084			1	
SEVFYPGETVVHGPGEATAVEWGPNTWMVEYGR	0	Unmodified	3650.6776	0.67763317	4307	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	100.93	100.82	3	3.8332E-79	88509	160511_QHF_FH_JSI11i_2	211.37	204.71			1.2401	1.2514	1.5001	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2523	1.2514	NaN	1	0	Median	1.161	1.2467	2.0996	2	0	Median	556620000	236450000	320170000	0	0	0	0	0	0	239430000	101030000	138400000	317190000	135420000	181770000	45033	4307	42385	272913;272914;272915	366085;366086	366086			2	
SEVLGTQSK	1	Unmodified	947.49238	0.49237523	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.837	11.439	2	0.00026574	9379	160511_QHF_FH_JSI12i_1	83.948	54.799			0.15786	0.16673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15786	0.16673	NaN	1	0	Median	437510000	372350000	65164000	0	0	0	0	0	0	0	0	0	437510000	372350000	65164000	45034	295	42386	272916	366087	366087			1	
SEVLLVSEDGK	1	Unmodified	1174.6081	0.60813326	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		52.268	42.829	2	0.0015082	23425	160513_QHF_FH_JSI11Kac_3	76.943	40.386			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45035	5338	42387	272917;272918	366088;366089	366088			2	
SEVPLVDVTK	1	Unmodified	1085.5968	0.5968403	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	51.69	51.15	2	0.0032559	45498	160511_QHF_FH_JSI9i_1	59.426	27.492			0.84949	0.85178	12.935	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96032	0.93335	NaN	1	0	Median	0.75146	0.77733	NaN	1	0	Median	148130000	77473000	70655000	0	0	0	0	0	0	74936000	37937000	36999000	73192000	39536000	33656000	45036	376	42388	272919;272920;272921;272922	366090;366091;366092	366092			3	
SEVQAIIESTPELDMDK	1	Unmodified	1903.9085	0.90847397	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	81.815	81.66	2;3	7.735E-08	74406	160511_QHF_FH_JSI12i_1	100.55	84.662			0.88384	1.0525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88384	1.0525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37052000	17854000	19198000	0	0	0	37052000	17854000	19198000	0	0	0	0	0	0	45037	404	42389	272923;272924;272925	366093;366094;366095	366093			3	
SEVSSDEDIQFR	0	Unmodified	1410.6263	0.62630252	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	39.916	37.578	2	7.9539E-171	34028	160511_QHF_FH_JSI12i_1	317.03	301.88			1.02	1.0732	26.242	5	1	Median	1.2961	1.0732	NaN	1	0	Median	0.69255	0.8017	41.93	2	1	Median	1.0797	1.0388	NaN	1	0	Median	1.02	1.0912	NaN	1	0	Median	1080400000	548760000	531690000	194960000	89596000	105360000	269750000	142530000	127220000	331610000	177200000	154410000	284120000	139430000	144690000	45038	1507	42390	272926;272927;272928;272929;272930	366096;366097;366098;366099;366100;366101;366102;366103;366104	366099			9	
SEVSSGSAR	0	Unmodified	878.40937	0.40937388	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								2	2	3	2	3.4074	3.07	2	0.00012759	1672	160511_QHF_FH_JSI12i_1	91.318	67.346			0.97066	1.0726	21.719	9	1	Median	1.3062	1.0761	19.339	2	0	Median	0.91967	1.0792	8.4609	2	0	Median	0.89744	0.8695	34.481	3	1	Plateau	0.82972	0.91121	23.062	2	0	Median	674950000	351290000	323660000	133610000	64541000	69073000	153760000	83330000	70426000	269440000	138340000	131100000	118140000	65083000	53062000	45039	776	42391	272931;272932;272933;272934;272935;272936;272937;272938;272939	366105;366106;366107;366108;366109;366110;366111;366112;366113;366114;366115;366116;366117;366118	366111			14	
SEVTFLAPVTRPDK	1	Unmodified	1558.8355	0.83550744	4092	Q96GK7	FAHD2A	Fumarylacetoacetate hydrolase domain-containing protein 2A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	3	3	55.435	55.013	2;3	1.2735E-16	47022	160511_QHF_FH_JSI12i_3	140.3	106.43			1.3327	1.2373	58.865	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3327	1.2373	60.689	3	3	Median	1.2352	1.3129	75.234	2	1	Median	602560000	191540000	411010000	0	0	0	0	0	0	325790000	93368000	232420000	276770000	98176000	178590000	45040	4092	42392	272940;272941;272942;272943;272944;272945;272946	366119;366120;366121;366122;366123;366124;366125;366126	366126			8	
SEVTFSTPALYIYTSGTTGLPK	1	Unmodified	2332.1838	0.18384419	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	2	2	4	99.889	99.756	2;3	1.5787E-22	90178	160511_QHF_FH_JSI10i_1	164.81	152.61			0.99492	1.0403	33.839	8	5	Median	NaN	NaN	NaN	0	0	Median	0.64932	0.74444	11.677	2	1	Median	1.1958	1.198	33.815	2	1	Median	1.0932	1.221	36.249	4	3	Median	125750000	63767000	61987000	0	0	0	34987000	22456000	12531000	32421000	12944000	19477000	58345000	28366000	29979000	45041	228	42393	272947;272948;272949;272950;272951;272952;272953;272954;272955	366127;366128;366129;366130;366131;366132;366133;366134;366135;366136;366137	366134			11	
SEWETLSR	0	Unmodified	1006.472	0.47197413	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	2	0		3								1	1		1	32.993	31.89	2	0.018457	28054	160511_QHF_FH_JSI10i_2	47.657	30.693			0.82023	0.92617	21.911	3	0	Median	0.82023	0.70522	NaN	1	0	Median	0.75183	0.92617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96534	1.0879	NaN	1	0	Median	163790000	92938000	70849000	43553000	25102000	18452000	71121000	42249000	28872000	0	0	0	49113000	25587000	23526000	45042	3438	42394	272956;272957;272958	366138	366138			1	
SEWGSLLEELVAEGK	1	Unmodified	1645.8199	0.81991695	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	3	3	101.85	101.78	2;3	1.1401E-116	88555	160511_QHF_FH_JSI12i_3	331.25	283.32			0.96557	1.0813	16.21	9	1	Median	1.4435	1.2327	NaN	1	0	Median	1.0272	1.2563	14.037	2	0	Median	0.99401	1.0113	17.244	3	1	Median	0.94082	0.9866	9.1969	3	0	Median	1927000000	1006800000	920200000	151410000	67530000	83881000	280230000	154260000	125980000	569410000	294830000	274590000	925920000	490170000	435750000	45043	1129	42395	272959;272960;272961;272962;272963;272964;272965;272966;272967	366139;366140;366141;366142;366143;366144;366145;366146;366147	366146			9	
SEWMDLKK	2	Unmodified	1035.5059	0.5059168	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	34.892	34.765	2	0.019492	29481	160511_QHF_FH_JSI12i_3	63.565	45.53			0.20799	0.21837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20799	0.21837	NaN	1	1	Median	59161000	48164000	10996000	0	0	0	0	0	0	0	0	0	59161000	48164000	10996000	45044	2831	42396	272968	366148	366148			1	
SEWNTVER	0	Unmodified	1019.4672	0.46722311	150	O00541	PES1	Pescadillo homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	21.028	20.224	2	0.014795	17247	160511_QHF_FH_JSI9i_2	51.059	10.956			0.97922	0.87114	8.1144	3	0	Median	1.0311	0.87114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97922	0.97593	NaN	1	0	Median	0.77888	0.83398	NaN	1	0	Median	133100000	65502000	67599000	39642000	17319000	22323000	0	0	0	51628000	22797000	28832000	41831000	25387000	16445000	45045	150	42397	272969;272970;272971	366149;366150;366151;366152	366151			4	
SEWPREPQVPLYVPK	1	Unmodified	1823.957	0.95701956	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	70.92	70.532	3	9.1989E-05	62694	160511_QHF_FH_JSI11i_3	100.45	89.398			0.76459	0.97497	25.665	5	4	Linear	1.2571	1.0616	NaN	1	1	Median	1.11	1.3752	NaN	1	1	Median	0.98608	0.91638	8.7648	2	2	Median	0.67006	0.68657	NaN	1	0	Median	401970000	206980000	194980000	53019000	25376000	27642000	79836000	36327000	43509000	202800000	103940000	98853000	66317000	41337000	24979000	45046	4751	42398	272972;272973;272974;272975;272976	366153;366154;366155;366156;366157;366158	366155			6	
SEWQKGAYLK	2	Acetyl (K)	1250.6295	0.62953741	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		59.101	48.219	2	0.0010232	26458	160513_QHF_FH_JSI11Kac_5	88.948	52.391			0.10449	0.099057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10449	0.099057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2283200	2185000	98143	0	0	0	0	0	0	2283200	2185000	98143	0	0	0	45047	3955	42399	272977	366159	366159	3008		1	
SEWSDLLSDLQK	1	Unmodified	1419.6882	0.6881745	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								3	4	2	1	96.209	95.987	2;3	3.7333E-12	84299	160511_QHF_FH_JSI11i_2	178.08	150.46			0.83547	0.92013	11.24	9	4	Median	0.91873	0.78912	17.199	2	1	Median	0.73511	0.87468	7.603	4	3	Linear	0.92081	0.93947	7.0658	2	0	Median	0.83547	0.93153	NaN	1	0	Median	430160000	239780000	190380000	95663000	52305000	43358000	141070000	79825000	61243000	95235000	51822000	43413000	98191000	55825000	42366000	45048	897	42400	272978;272979;272980;272981;272982;272983;272984;272985;272986;272987	366160;366161;366162;366163;366164;366165;366166;366167;366168;366169;366170;366171;366172;366173;366174;366175;366176;366177;366178;366179;366180;366181	366173			22	
SEWSELQSQER	0	Unmodified	1377.6161	0.61607219	2228	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.171	35.737	2	0.0061763	30435	160511_QHF_FH_JSI11i_2	52.49	24.748			1.1275	1.1167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1275	1.1167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65802000	34480000	31322000	0	0	0	0	0	0	65802000	34480000	31322000	0	0	0	45049	2228	42401	272988	366182	366182			1	
SEYDRGVNTFSPEGR	0	Unmodified	1712.7754	0.77542638	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	33.167	32.484	3	8.0662E-05	27470	160511_QHF_FH_JSI12i_3	89.541	73.142			1.3436	1.3675	29.117	5	0	Median	1.2882	1.1036	NaN	1	0	Median	1.9205	2.3789	NaN	1	0	Median	1.8531	1.6875	NaN	1	0	Median	1.2907	1.3592	0.86845	2	0	Median	204740000	78023000	126710000	37451000	17181000	20271000	78647000	27326000	51321000	32596000	10304000	22292000	56042000	23211000	32831000	45050	1300	42402	272989;272990;272991;272992;272993;272994	366183;366184;366185;366186;366187	366186			5	
SEYIETASGNK	1	Unmodified	1197.5513	0.55134667	4415	Q9BTE1	DCTN5	Dynactin subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		24.401	16.888	2	6.3726E-05	10665	160513_QHF_FH_JSI11Kac_3	96.89	75.988			1.099	1.1413	33.048	2	0	Median	NaN	NaN	NaN	0	0	Median	1.262	1.4418	NaN	1	0	Median	0.95704	0.9035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4179800	2149000	2030800	0	0	0	1656200	804490	851700	2523600	1344500	1179100	0	0	0	45051	4415	42403	272995;272996	366188;366189	366188			2	
SEYLEVK	1	Unmodified	866.43855	0.43854874	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		26.551	26.36	2	0.014343	23280	160511_QHF_FH_JSI11i_1	67.032	34.562			1.7874	1.681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7874	1.681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49455000	17402000	32053000	0	0	0	0	0	0	49455000	17402000	32053000	0	0	0	45052	940	42404	272997	366190	366190			1	
SEYNDQLTR	0	Unmodified	1124.5098	0.5098162	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.579	16.106	2	4.6054E-06	13582	160511_QHF_FH_JSI10i_1	118.71	94.756			0.96044	0.98607	7.1407	4	0	Median	1.3177	1.0785	NaN	1	0	Median	0.7853	0.91006	NaN	1	0	Median	1.0224	1.0067	NaN	1	0	Median	0.90222	0.96589	NaN	1	0	Median	399840000	200060000	199780000	105530000	48101000	57426000	101190000	53899000	47293000	101050000	46045000	55008000	92066000	52012000	40055000	45053	1240	42405	272998;272999;273000;273001	366191;366192;366193;366194	366193			3	
SEYPSIK	1	Unmodified	822.41233	0.41233399	1965	P61916	NPC2	Epididymal secretory protein E1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	21.645	21.344	2	0.014353	18396	160511_QHF_FH_JSI11i_1	66.993	39.873			7.0652	8.4722	29.663	3	3	Median	NaN	NaN	NaN	0	0	Median	7.0652	8.4722	NaN	1	1	Median	5.3691	5.291	NaN	1	1	Median	8.6039	9.1524	NaN	1	1	Median	1955900000	130990000	1824900000	0	0	0	594210000	35269000	558940000	452120000	36773000	415350000	909580000	58945000	850630000	45054	1965	42406	273002;273003;273004	366195;366196;366197	366195			3	
SEYSELDEDESQAPYDPNGKPER	1	Unmodified	2654.1256	0.12561362	1156	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	43.483	43.005	3	1.2599E-19	38614	160511_QHF_FH_JSI10i_1	148.88	145.66			0.77704	0.74986	25.788	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61841	0.73665	NaN	1	0	Median	0.77704	0.74986	NaN	1	1	Median	1.1216	1.1614	NaN	1	0	Median	135250000	67256000	67993000	0	0	0	53757000	24998000	28760000	28760000	16464000	12297000	52731000	25795000	26937000	45055	1156	42407	273005;273006;273007;273008;273009	366198;366199;366200;366201;366202;366203	366203			6	
SEYSSYPDINFNR	0	Unmodified	1590.6951	0.69505079	3352	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	56.547	55.892	2	7.8084E-08	50769	160511_QHF_FH_JSI12i_1	140.3	134.01			1.1807	1.1975	4.6853	4	1	Median	1.472	1.1763	NaN	1	0	Median	1.0719	1.219	NaN	1	1	Median	1.155	1.1051	NaN	1	0	Median	1.207	1.2219	NaN	1	0	Median	121870000	55732000	66134000	41382000	14894000	26488000	21054000	12148000	8906400	30856000	14804000	16052000	28574000	13886000	14687000	45056	3352	42408	273010;273011;273012;273013;273014	366204;366205;366206;366207;366208;366209;366210;366211	366208			8	
SEYTSLIPNLR	0	Unmodified	1291.6772	0.67721588	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.61	70.318	2	0.00012568	60588	160511_QHF_FH_JSI12i_2	96.331	77.551			0.89815	0.97551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89815	0.97551	NaN	1	1	Median	57526000	36171000	21355000	0	0	0	0	0	0	0	0	0	57526000	36171000	21355000	45057	787	42409	273015	366212	366212			1	
SEYVEKFYR	1	Acetyl (K)	1261.5979	0.59790293	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	61.784	50.966	2	0.0069331	27815	160513_QHF_FH_JSI11Kac_5	68.735	50.423			0.929	0.97038	58.358	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64857	0.64229	NaN	1	0	Median	1.3307	1.4661	NaN	1	0	Median	7378100	4472900	2905200	0	0	0	0	0	0	5738400	3747600	1990900	1639700	725340	914360	45058	3896	42410	273016;273017;273018	366213;366214;366215	366214	2989		3	
SFADINLYR	0	Unmodified	1097.5506	0.55055881	785	P01111	NRAS	GTPase NRas	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		60.012	59.507	2	0.010659	51680	160511_QHF_FH_JSI11i_2	67.897	44.826			3.2604	3.345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2604	3.345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	484310000	62938000	421370000	0	0	0	0	0	0	484310000	62938000	421370000	0	0	0	45059	785	42411	273019	366216	366216			1	
SFAFLHCK	1	Unmodified	1008.4851	0.48512178	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	42.225	41.639	2;3	0.0010681	35196	160511_QHF_FH_JSI12i_3	63.565	54.652			1.9984	2.053	59.801	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57259	0.66132	NaN	1	1	Median	1.7052	1.6244	NaN	1	1	Median	1.9984	2.053	NaN	1	0	Median	114990000	41933000	73054000	0	0	0	13213000	8523400	4689600	36325000	16595000	19730000	65449000	16814000	48635000	45060	116	42412	273020;273021;273022	366217;366218;366219	366219			3	
SFAGAVSPQEEEEFR	0	Unmodified	1681.7584	0.75837933	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	83.361	82.699	3	0.060491	72899	160511_QHF_FH_JSI9i_2	16.939	11.035			0.96321	0.98257	11.458	5	0	Median	1.1821	1.0281	NaN	1	0	Median	0.64318	0.78745	NaN	1	0	Median	0.98696	0.96878	1.9996	2	0	Median	0.96321	1.0503	NaN	1	0	Median	163780000	85224000	78558000	31889000	14593000	17296000	33033000	18346000	14687000	60522000	33188000	27335000	38338000	19098000	19241000	45061	1410	42413	273023;273024;273025;273026;273027	366220;366221	366220			2	
SFAGAVSPQEEEEFRR	0	Unmodified	1837.8595	0.85949036	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.45		7	5						3	2	5	5	3	47.027	44.269	2;3	4.2088E-23	38992	160511_QHF_FH_JSI10i_2	182.1	153.14			0.95013	1.006	10.937	12	3	Median	1.082	0.90137	21.259	2	0	Median	0.85751	1.0254	8.9767	4	2	Median	0.9533	0.91709	9.4342	3	0	Median	0.98219	1.0516	5.5999	3	1	Median	1820100000	942430000	877710000	472400000	234420000	237980000	737680000	417600000	320090000	497210000	233460000	263750000	112840000	56951000	55893000	45062	1410	42414	273028;273029;273030;273031;273032;273033;273034;273035;273036;273037;273038;273039;273040;273041;273042	366222;366223;366224;366225;366226;366227;366228;366229;366230;366231;366232;366233;366234;366235;366236;366237;366238;366239	366235			18	
SFAGNLNTYK	1	Unmodified	1113.5455	0.54547343	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	6.66	3	4	4					4	4	4	6	5	4	41.209	36.458	2	6.5363E-11	30890	160511_QHF_FH_JSI12i_3	166.34	131.53			1.0476	1.0539	16.485	18	2	Median	1.2651	1.0539	10.337	4	0	Median	0.99102	1.1728	9.282	5	1	Median	1.1599	1.1823	18.651	5	1	Median	0.84093	0.92228	16.988	4	0	Median	4061800000	2102600000	1959200000	412610000	196150000	216460000	677500000	367280000	310210000	1387400000	708900000	678500000	1584300000	830290000	754040000	45063	2176	42415	273043;273044;273045;273046;273047;273048;273049;273050;273051;273052;273053;273054;273055;273056;273057;273058;273059;273060;273061	366240;366241;366242;366243;366244;366245;366246;366247;366248;366249;366250;366251;366252;366253;366254;366255;366256;366257;366258;366259;366260;366261;366262;366263;366264;366265;366266;366267;366268;366269;366270;366271	366267			32	
SFAGNLNTYKR	1	Acetyl (K)	1311.6571	0.65714914	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	53.426	44.047	2	7.7597E-19	23866	160513_QHF_FH_JSI11Kac_6	164.65	124.61			0.74351	0.80612	123	2	1	Median	NaN	NaN	NaN	0	0	Median	1.6152	1.9236	NaN	1	1	Median	0.34227	0.33781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35501000	22705000	12796000	0	0	0	7615900	1513000	6102900	24905000	18212000	6693300	2980000	2980000	0	45064	2176	42416	273062;273063;273064	366272;366273;366274;366275	366272	2296		4	
SFAKAAIEK	2	Acetyl (K)	1005.5495	0.54949617	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.9	0.781							3	3	2		2	3	3	47.042	36.856	2	0.00035222	20710	160513_QHF_FH_JSI11Kac_5	102.52	68.271			0.76654	0.8341	19.879	6	0	Median	NaN	NaN	NaN	0	0	Median	0.69586	0.83184	7.1125	2	0	Median	0.7594	0.75042	8.2222	2	0	Median	1.0177	1.1193	11.569	2	0	Median	106370000	61115000	45250000	0	0	0	37125000	21197000	15928000	39828000	24468000	15360000	29412000	15450000	13962000	45065	4983	42417	273065;273066;273067;273068;273069;273070;273071;273072	366276;366277;366278;366279;366280;366281;366282	366279	3283		6	
SFAMSAVITEGVKPTLSELEK	2	Unmodified	2236.1661	0.16608564	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		96.125	96.125	3	4.23E-05	85654	160511_QHF_FH_JSI11i_3	63.578	54.787			1.5333	1.4191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5333	1.4191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14094000	3763400	10331000	0	0	0	0	0	0	14094000	3763400	10331000	0	0	0	45066	116	42418	273073	366283	366283			1	
SFANEEGEAQK	1	Unmodified	1208.5309	0.53094558	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.958	13.516	2	5.9728E-13	11132	160511_QHF_FH_JSI10i_1	145.25	96.687			0.9424	1.0405	17.053	4	1	Median	1.5218	1.246	NaN	1	1	Median	0.88584	1.0337	NaN	1	0	Median	0.83603	0.82222	NaN	1	0	Median	1.0026	1.0473	NaN	1	0	Median	433860000	234860000	199000000	91985000	44531000	47454000	106400000	57074000	49328000	110610000	59837000	50774000	124860000	73421000	51443000	45067	2211	42419	273074;273075;273076;273077	366284;366285;366286;366287;366288;366289;366290	366289			7	
SFAPILPHLAEEVFQHIPYIK	1	Unmodified	2448.3206	0.32055286	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			8								2	2	4	103.9	103.87	3;4	3.3396E-46	90206	160511_QHF_FH_JSI12i_3	198.42	190.23			0.95201	1.0273	14.712	7	3	Median	NaN	NaN	NaN	0	0	Median	0.85014	1.0275	0.030535	2	2	Median	1.1121	1.0451	1.0893	2	0	Median	0.95201	0.95619	19.279	3	1	Median	314350000	156860000	157500000	0	0	0	12370000	7183900	5186300	86906000	39840000	47066000	215080000	109830000	105240000	45068	4983	42420	273078;273079;273080;273081;273082;273083;273084;273085	366291;366292;366293;366294;366295;366296;366297;366298;366299;366300;366301;366302;366303;366304;366305;366306;366307;366308;366309;366310	366300			20	
SFAQWDQLVAHK	1	Unmodified	1428.715	0.71499837	4497	Q9BWE0	REPIN1	Replication initiator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	65.618	64.724	3	3.0523E-06	56020	160511_QHF_FH_JSI12i_3	116.01	95.058			0.99473	1.0744	31.722	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1457	1.3445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86363	0.85849	NaN	1	0	Median	122170000	64619000	57551000	0	0	0	18489000	9529500	8959000	0	0	0	103680000	55090000	48592000	45069	4497	42421	273086;273087	366311;366312;366313	366313			3	
SFATASHR	0	Unmodified	875.42496	0.42496436	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			6.0586	5.549	2	0.00091687	3542	160511_QHF_FH_JSI9i_3	96.492	67.154			1.0597	1.0195	7.3068	2	0	Median	1.1984	0.96818	NaN	1	0	Median	0.93709	1.0736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	205980000	96924000	109060000	132180000	57364000	74818000	73797000	39560000	34237000	0	0	0	0	0	0	45070	5124	42422	273088;273089	366314;366315;366316;366317	366316			4	
SFAVGMFK	1	Unmodified	885.44186	0.44185998	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.42		5	4					1	4	4	4	3	3	62.679	58.785	2	0.0011574	50555	160511_QHF_FH_JSI12i_2	93.262	72.98			1.1204	1.0533	84.371	14	4	Median	1.429	1.1839	65.321	4	1	Median	0.86394	1.0328	24.14	4	2	Median	1.1295	1.0683	161.56	3	0	Median	0.99149	1.0213	16.54	3	1	Median	6020300000	2883400000	3137000000	1016200000	410360000	605870000	1548600000	784610000	764030000	1453300000	727630000	725680000	2002100000	960770000	1041400000	45071	1675	42423	273090;273091;273092;273093;273094;273095;273096;273097;273098;273099;273100;273101;273102;273103	366318;366319;366320;366321;366322;366323;366324;366325;366326;366327;366328;366329;366330;366331;366332;366333;366334;366335;366336;366337;366338;366339;366340;366341;366342;366343;366344;366345;366346;366347	366322			30	
SFAVGMFK	1	Oxidation (M)	901.43677	0.4367746	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	9.33	6.34			3					1	2	3		1	2	50.161	44.888	2	0.014078	38399	160511_QHF_FH_JSI12i_3	56.122	39.919			1.1313	1.0278	24.883	6	1	Median	1.4847	1.2167	11.564	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99935	0.98998	NaN	1	0	Median	0.72282	0.74108	1.8856	2	1	Median	232190000	113920000	118270000	61679000	27080000	34599000	0	0	0	6883200	2828800	4054400	163630000	84008000	79619000	45072	1675	42423	273104;273105;273106;273107;273108;273109	366348;366349;366350;366351	366350		1365	4	
SFAVYAATATEK	1	Unmodified	1257.6241	0.62411768	4790	Q9H8W4	PLEKHF2	Pleckstrin homology domain-containing family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7	6.38		1	1						1	1	1	1		46.99	45.428	2	0.00047901	24520	160513_QHF_FH_JSI11Kac_6	91.855	45.858			1.2471	1.4758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2471	1.4758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15335000	5185200	10150000	0	0	0	15335000	5185200	10150000	0	0	0	0	0	0	45073	4790	42424	273110;273111;273112	366352;366353;366354	366353			3	
SFDAVLEALSR	0	Unmodified	1206.6245	0.62445203	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By matching		By MS/MS		2.33	0.471		2	1							1		2		90.566	90.275	2	0.014842	80420	160511_QHF_FH_JSI11i_3	51.762	32.982			1.6113	1.5789	16.171	3	1	Median	1.6113	1.3631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7821	1.7242	12.445	2	1	Median	NaN	NaN	NaN	0	0	Median	53799000	16208000	37590000	9896400	2580600	7315800	0	0	0	43902000	13628000	30274000	0	0	0	45074	3094	42425	273113;273114;273115	366355;366356	366355			1	
SFDDEEIQK	1	Unmodified	1109.4877	0.48768378	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.134	27.861	2	0.0042219	24197	160511_QHF_FH_JSI9i_1	67.897	55.541			1.4274	1.1722	NaN	1	1	Median	1.4274	1.1722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38438000	13118000	25320000	38438000	13118000	25320000	0	0	0	0	0	0	0	0	0	45075	384	42426	273116	366357	366357			1	
SFDDPIVQTER	0	Unmodified	1305.6201	0.62009493	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.73	47.05	2	2.6996E-13	42499	160511_QHF_FH_JSI11i_1	150.81	94.089			1.1261	1.2078	5.9043	4	0	Linear	1.3563	1.1307	NaN	1	0	Median	1.0438	1.2207	NaN	1	0	Median	1.2149	1.1586	NaN	1	0	Median	1.0145	1.0589	NaN	1	0	Median	590680000	274380000	316310000	143730000	56294000	87432000	156670000	76574000	80098000	153650000	70384000	83262000	136640000	71124000	65513000	45076	723	42427	273117;273118;273119;273120	366358;366359;366360;366361;366362;366363;366364;366365;366366	366359			9	
SFDFEIETK	1	Unmodified	1114.5183	0.51825563	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	63.5	62.849	2	0.00089815	56998	160511_QHF_FH_JSI10i_1	72.042	58.999			1.2568	1.4799	20.732	3	2	Plateau	1.135	0.98068	NaN	1	1	Median	1.2568	1.4799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1947	1.2591	NaN	1	1	Median	172360000	69179000	103190000	27111000	12228000	14882000	83254000	35426000	47828000	0	0	0	62000000	21525000	40475000	45077	2277	42428	273121;273122;273123	366367;366368;366369;366370	366369			4	
SFDLIHSPHGELK	1	Unmodified	1478.7518	0.75177781	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	47.133	47.052	3;4	1.2902E-05	41505	160511_QHF_FH_JSI11i_3	107.46	98.866			1.2241	1.1756	15.49	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1203	1.0316	20.743	2	1	Median	1.1133	1.1245	NaN	1	0	Median	250180000	119090000	131090000	0	0	0	0	0	0	165810000	79872000	85935000	84369000	39214000	45156000	45078	5451	42429	273124;273125;273126	366371;366372;366373;366374;366375;366376	366372			6	
SFDLLILK	1	Unmodified	947.56917	0.56916898	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.67		4						1	6	4	3	2	2	87.75	82.655	2	0.00011925	44149	160513_QHF_FH_JSI10Kac_6	121.99	40.692			0.96083	0.95794	18.658	9	2	Median	1.1007	0.95794	8.7114	3	1	Median	0.8088	0.97213	12.399	2	1	Median	1.1292	1.1296	18.333	2	0	Median	0.74196	0.78497	27.807	2	0	Median	258870000	128080000	130780000	59552000	30718000	28834000	55453000	26891000	28561000	88755000	35958000	52798000	55105000	34515000	20590000	45079	3675	42430	273127;273128;273129;273130;273131;273132;273133;273134;273135;273136;273137	366377;366378;366379;366380;366381;366382;366383;366384;366385;366386;366387;366388;366389;366390;366391	366391			15	
SFDLLVK	1	Unmodified	820.46945	0.46945494	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.27	3	4	4				2	4	1	3	5	5	5	66.252	61.689	2	0.0017493	30698	160513_QHF_FH_JSI12Kac_5	105.39	71.652			0.94224	0.98163	17.388	18	0	Median	1.1626	0.9855	9.8493	3	0	Median	0.87035	1.0053	24.496	5	0	Median	0.93916	0.942	11.892	5	0	Median	0.97722	1.0012	15.595	5	0	Median	3341900000	1716000000	1625900000	616230000	275760000	340470000	795580000	460300000	335280000	937390000	447310000	490080000	992740000	532650000	460090000	45080	4837	42431	273138;273139;273140;273141;273142;273143;273144;273145;273146;273147;273148;273149;273150;273151;273152;273153;273154;273155	366392;366393;366394;366395;366396;366397;366398;366399;366400;366401;366402;366403;366404;366405;366406;366407;366408;366409;366410;366411;366412;366413;366414;366415;366416;366417;366418;366419;366420;366421	366415			30	
SFDLLVKNLNGK	2	Acetyl (K)	1388.7664	0.76636524	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		83.372	73.451	2	6.4174E-12	38794	160513_QHF_FH_JSI11Kac_5	123.88	99.029			0.28617	0.28017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28617	0.28017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17791000	16766000	1025700	0	0	0	0	0	0	17791000	16766000	1025700	0	0	0	45081	4837	42432	273156;273157	366422;366423	366423	3247		2	
SFDPNLLHNNGHNGYPNGTSAALR	0	Acetyl (Protein N-term)	2607.2215	0.22146053	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	1	2	2	1	66.075	63.466	3	2.9315E-12	56242	160511_QHF_FH_JSI10i_2	111.11	107.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45082	543	42433	273158;273159;273160;273161;273162;273163	366424;366425;366426;366427;366428;366429;366430;366431	366430			8	
SFDPSAREPPGSTAGLPQEPK	1	Unmodified	2167.0546	0.054561351	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		47.496	47.496	3	0.00066399	41968	160511_QHF_FH_JSI11i_3	49.528	33.585			1.3506	1.2571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3506	1.2571	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31465000	9788100	21676000	0	0	0	0	0	0	31465000	9788100	21676000	0	0	0	45083	4413	42434	273164	366432	366432			1	
SFDQADR	0	Unmodified	837.3617	0.3616954	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.2664	9.0307	2	0.023256	6888	160511_QHF_FH_JSI10i_1	58.819	11.069			1.1456	1.3683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1456	1.3683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	222440000	104360000	118080000	0	0	0	222440000	104360000	118080000	0	0	0	0	0	0	45084	3290	42435	273165	366433	366433			1	
SFDSMISTNCTEELENAGVEVLK	1	Unmodified	2572.1673	0.1672842	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	98.347	98.147	3	0.00095812	88999	160511_QHF_FH_JSI12i_1	45.423	42.086			2.1296	2.1097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1296	2.1097	NaN	1	1	Median	14828000	1406500	13422000	0	0	0	0	0	0	0	0	0	14828000	1406500	13422000	45085	765	42436	273166	366434	366434			1	
SFDTSLIR	0	Unmodified	937.4869	0.48689592	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.389	49.862	2	0.014231	42977	160511_QHF_FH_JSI11i_2	60.895	28.941			5.2863	5.3676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.2863	5.3676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	180000000	36084000	143920000	0	0	0	0	0	0	180000000	36084000	143920000	0	0	0	45086	564	42437	273167	366435	366435			1	
SFDTSLIRK	1	Unmodified	1065.5819	0.58185894	564	O75787	ATP6AP2	Renin receptor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	2	2		41.238	40.393	2;3	4.5681E-07	35466	160511_QHF_FH_JSI11i_3	129.42	78.229			0.91806	0.89129	15.111	6	1	Median	1.1377	0.94136	15.765	2	0	Median	0.69735	0.81837	20.106	2	0	Median	0.95706	0.88288	17.1	2	1	Median	NaN	NaN	NaN	0	0	Median	578190000	302420000	275770000	186890000	89059000	97827000	190930000	113520000	77414000	200380000	99843000	100530000	0	0	0	45087	564	42438	273168;273169;273170;273171;273172;273173	366436;366437;366438;366439;366440;366441;366442	366436			7	
SFDTVIMNPPFGTK	1	Unmodified	1552.7596	0.7595653	4960	Q9NRN9	METTL5	Methyltransferase-like protein 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			82.913	82.247	2	0.00064479	73188	160511_QHF_FH_JSI10i_2	90.05	64.008			0.59245	0.69773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59245	0.69773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16303000	10383000	5919900	0	0	0	16303000	10383000	5919900	0	0	0	0	0	0	45088	4960	42439	273174	366443	366443			1	
SFDVNKPGCEVDDLK	2	Unmodified	1721.7931	0.79305028	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	1			By MS/MS	By MS/MS	2	0		3										2	1	48.636	47.677	2	8.4607E-05	40955	160511_QHF_FH_JSI11i_2	86.313	53.815			0.61785	0.64378	4.1968	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65451	0.66317	NaN	1	1	Median	0.58325	0.62496	NaN	1	1	Median	32521000	22447000	10074000	0	0	0	0	0	0	19743000	11774000	7969700	12778000	10673000	2104800	45089	1508	42440	273175;273176;273177	366444;366445;366446	366446			3	
SFEAPATINSASLHPEK	1	Unmodified	1797.8897	0.88972785	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	5.17	3	11	6					5		6	6	5	8	54.213	51.631	2;3;4	6.0978E-24	28115	160513_QHF_FH_JSI11Kac_5	148.03	135.05			0.99078	0.98067	18.501	23	1	Median	1.1089	0.96799	28.924	6	0	Median	0.77906	0.93886	5.2958	6	0	Median	1.0725	1.0235	6.8886	5	0	Median	1.0528	1.1517	16.055	6	1	Median	6250900000	3005200000	3245600000	986240000	444780000	541460000	1425200000	749810000	675350000	1887200000	929400000	957800000	1952300000	881220000	1071000000	45090	5595	42441	273178;273179;273180;273181;273182;273183;273184;273185;273186;273187;273188;273189;273190;273191;273192;273193;273194;273195;273196;273197;273198;273199;273200;273201;273202	366447;366448;366449;366450;366451;366452;366453;366454;366455;366456;366457;366458;366459;366460;366461;366462;366463;366464;366465;366466;366467;366468;366469;366470;366471;366472;366473;366474;366475;366476;366477;366478;366479;366480;366481;366482;366483;366484;366485;366486;366487;366488	366475			42	
SFEAPIK	1	Unmodified	790.4225	0.42250475	3712	Q8TCT9	HM13	Minor histocompatibility antigen H13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	33.819	33.133	2	0.011412	28962	160511_QHF_FH_JSI10i_2	77.741	51.914			0.99836	0.9685	48.269	7	4	Median	1.3274	1.1062	74.844	2	1	Median	1.0414	1.2275	53.46	2	1	Median	0.86381	0.86593	15.831	2	2	Median	2.05	2.0873	NaN	1	0	Median	1240200000	748000000	492170000	257220000	144230000	112990000	360660000	213550000	147110000	566770000	370000000	196770000	55510000	20220000	35291000	45091	3712	42442	273203;273204;273205;273206;273207;273208;273209	366489;366490;366491;366492;366493;366494	366494			6	
SFEDPPNHAR	0	Unmodified	1168.5261	0.52613497	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		11.522	11.522	2	0.0033721	9111	160511_QHF_FH_JSI11i_3	59.245	44.571			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45092	1273	42443	273210	366495	366495			1	
SFEEAFQK	1	Unmodified	984.45526	0.45526144	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.3	36.045	2	0.053461	32339	160511_QHF_FH_JSI11i_1	45.335	26.553			3.2006	3.005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2006	3.005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49560000	12720000	36841000	0	0	0	0	0	0	49560000	12720000	36841000	0	0	0	45093	1296	42444	273211	366496	366496			1	
SFEENVNDSK	1	Unmodified	1167.5044	0.50439647	3261	Q7Z3T8	ZFYVE16	Zinc finger FYVE domain-containing protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.345	17.727	2	0.035946	15178	160511_QHF_FH_JSI12i_1	38.567	30.524			0.99137	1.0409	7.4276	3	0	Plateau	1.0754	0.91105	NaN	1	0	Median	0.8833	1.0308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99137	1.0409	NaN	1	0	Median	126070000	65520000	60545000	27593000	13674000	13919000	47932000	26176000	21757000	0	0	0	50541000	25670000	24870000	45094	3261	42445	273212;273213;273214	366497	366497			1	
SFEGLFYFLGSIVNFSQDPDVHFK	1	Unmodified	2792.3486	0.34861811	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	2.08				2					7	2	4	2	1	101.43	93.977	2;3;4;5	6.925E-300	56391	160513_QHF_FH_JSI10Kac_6	463.56	435.41			0.97865	1.0044	11.256	8	0	Median	1.0759	0.9109	1.0172	2	0	Median	0.95704	1.1374	5.8982	4	0	Median	0.9672	0.94145	5.0129	2	0	Median	NaN	NaN	NaN	0	0	Median	7030900000	3578900000	3452000000	2695000000	1256900000	1438100000	4299000000	2303700000	1995400000	36880000	18326000	18553000	0	0	0	45095	2155	42446	273215;273216;273217;273218;273219;273220;273221;273222;273223	366498;366499;366500;366501;366502;366503;366504;366505;366506;366507;366508;366509;366510;366511	366510			14	
SFEGMVVAALLAGR	0	Unmodified	1419.7544	0.75442035	2463	Q13641	TPBG	Trophoblast glycoprotein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	102.42	102.36	2	0.014272	88850	160511_QHF_FH_JSI12i_3	71.555	44.44			0.75843	0.82519	21.022	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8549	0.95744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67284	0.71121	NaN	1	0	Median	161810000	88823000	72990000	0	0	0	103530000	57057000	46475000	0	0	0	58281000	31765000	26516000	45096	2463	42447	273224;273225	366512	366512			0	
SFEGNVFMYYGLSNFYQNHR	0	Unmodified	2472.0957	0.095714659	5026	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.841	80.557	3	6.5408E-178	46418	160513_QHF_FH_JSI10Kac_6	288.55	273.31			1.0229	1.0264	7.514	4	0	Median	1.1329	0.96061	NaN	1	0	Median	0.91798	1.0838	NaN	1	0	Median	1.1804	1.114	NaN	1	0	Median	0.92359	0.97215	NaN	1	0	Median	802510000	405930000	396580000	143580000	70865000	72719000	377980000	208130000	169850000	154340000	67128000	87213000	126610000	59804000	66805000	45097	5026	42448	273226;273227;273228;273229	366513;366514;366515;366516;366517	366517			5	
SFEGNVFMYYGLSNFYQNHR	0	Oxidation (M)	2488.0906	0.090629281	5026	Q9NV96	TMEM30A	Cell cycle control protein 50A	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	85.655	76.628	3	1.03E-34	40916	160513_QHF_FH_JSI12Kac_6	168.27	151.78			1.0619	1.0098	1.3861	2	0	Median	1.1709	1	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96293	1.0198	NaN	1	0	Median	180750000	91770000	88985000	99610000	49191000	50419000	0	0	0	0	0	0	81144000	42579000	38566000	45098	5026	42448	273230;273231;273232	366518;366519;366520	366519		2574	2	
SFEHMKK	2	Unmodified	905.44292	0.44292261	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	6.2143	6.312	2;3	0.0045808	3934	160511_QHF_FH_JSI12i_3	56.011	28.486			1.0399	1.0554	19.012	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0399	1.0554	19.012	2	0	Median	377700000	159310000	218390000	0	0	0	0	0	0	0	0	0	377700000	159310000	218390000	45099	4048	42449	273233;273234	366521;366522;366523	366522			3	
SFEMTEFNQALEEIK	1	Unmodified	1814.8397	0.83966612	4483	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.134	96.887	2	0.0015669	85758	160511_QHF_FH_JSI10i_2	75.045	58.413			1.6176	1.9468	15.204	4	4	Linear	1.578	1.3734	NaN	1	1	Median	1.6472	1.945	NaN	1	1	Median	1.9232	1.8209	NaN	1	1	Median	1.5884	1.7581	NaN	1	1	Median	62259000	25561000	36697000	13631000	4622600	9008700	17101000	7598900	9501900	15765000	7233700	8531400	15762000	6106100	9655400	45100	4483	42450	273235;273236;273237;273238	366524;366525;366526;366527	366527			4	
SFENDAQSSDNINFLK	1	Unmodified	1827.8275	0.82752153	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	64.027	63.402	2;3	5.6653E-31	57693	160511_QHF_FH_JSI12i_1	196.57	181.7			1.2015	1.3196	23.447	8	1	Median	2.2594	1.8756	18.821	2	1	Median	1.2015	1.378	6.5045	2	0	Median	1.2064	1.1793	16.264	2	0	Median	1.0804	1.1268	1.6335	2	0	Median	263870000	108440000	155420000	48062000	15663000	32399000	61230000	28254000	32976000	87450000	34400000	53051000	67123000	30124000	36999000	45101	280	42451	273239;273240;273241;273242;273243;273244;273245;273246	366528;366529;366530;366531;366532;366533;366534;366535	366531			7	
SFENIQNWMK	1	Unmodified	1295.5969	0.59685707	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	69.957	69.444	2	1.0361E-07	60619	160511_QHF_FH_JSI11i_2	122.13	63.459			1.4318	1.3361	24.108	5	4	Median	1.5663	1.3106	NaN	1	1	Median	0.94035	1.1321	NaN	1	1	Median	1.7102	1.6938	33.551	2	1	Median	1.4318	1.4733	NaN	1	1	Median	1334800000	413330000	921510000	229780000	56768000	173010000	232790000	79741000	153050000	598270000	194740000	403520000	274010000	82081000	191930000	45102	1730	42452	273247;273248;273249;273250;273251;273252	366536;366537;366538;366539;366540;366541;366542;366543	366540			8	
SFENISK	1	Unmodified	823.40758	0.40758296	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	4	4								2	1	1	4	20.96	20.15	2	0.011362	16560	160511_QHF_FH_JSI12i_2	77.923	25.239			1.6449	1.541	140.64	8	1	Median	4.9871	4.2172	152.7	2	0	Median	1.2005	1.4305	NaN	1	0	Median	1.4416	1.3918	NaN	1	0	Median	2.8374	3.0829	185.05	4	1	Median	1007000000	413640000	593400000	191740000	43851000	147880000	182820000	97645000	85179000	158940000	76290000	82651000	473540000	195850000	277690000	45103	1933	42453	273253;273254;273255;273256;273257;273258;273259;273260	366544;366545;366546;366547	366545			4	
SFENSLGINVPR	0	Unmodified	1331.6834	0.68336389	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	63.084	62.418	2	1.3511E-24	54806	160511_QHF_FH_JSI9i_2	183.33	171.49			1.0207	1.0741	24.723	6	2	Median	1.3106	1.1184	NaN	1	0	Median	0.83804	1.0023	4.064	2	1	Median	1.4385	1.3894	44.157	2	1	Median	1.047	1.1706	NaN	1	0	Median	682150000	339760000	342390000	115410000	45822000	69592000	196790000	111570000	85223000	223470000	101630000	121840000	146470000	80736000	65731000	45104	2772	42454	273261;273262;273263;273264;273265;273266	366548;366549;366550	366550			3	
SFEPAVLK	1	Unmodified	889.49092	0.49091866	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	45.242	44.332	2	0.0032287	37910	160511_QHF_FH_JSI12i_2	74.127	59.345			1.1619	1.063	22.97	5	2	Median	1.1619	1.0092	NaN	1	0	Median	0.72486	0.87396	NaN	1	0	Median	1.3342	1.3482	NaN	1	1	Median	1.187	1.2817	26.462	2	1	Median	377310000	198470000	178850000	77978000	39986000	37992000	75228000	41003000	34225000	114420000	58875000	55542000	109690000	58603000	51089000	45105	4578	42455	273267;273268;273269;273270;273271	366551;366552;366553;366554;366555;366556	366551			6	
SFEQISANITK	1	Unmodified	1236.635	0.63501672	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.55		2	1				2	6		2	3	2	4	59.021	50.632	2	0.00012142	43467	160511_QHF_FH_JSI12i_2	138.71	86.231			0.88694	0.81374	52.73	8	7	Median	0.84635	0.70884	NaN	1	0	Median	0.99869	1.1884	64.999	3	3	Median	0.92947	0.88361	NaN	1	1	Median	0.69023	0.7494	70.205	3	3	Median	459930000	234960000	224970000	4098200	1775600	2322600	6724700	3766200	2958500	2362400	1336000	1026300	446750000	228080000	218660000	45106	897	42456	273272;273273;273274;273275;273276;273277;273278;273279;273280;273281;273282	366557;366558;366559;366560;366561;366562;366563;366564;366565;366566;366567;366568;366569	366558			13	
SFESTVGQGSDTYIYIFR	0	Unmodified	2068.9742	0.97418577	1178	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			89.497	89.046	2	4.5867E-11	78356	160511_QHF_FH_JSI9i_2	200.13	177.59			1.2003	1.2133	14.062	2	2	Median	1.5949	1.3401	NaN	1	1	Median	0.90336	1.0985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46158000	16237000	29922000	22933000	7882900	15050000	23225000	8353700	14871000	0	0	0	0	0	0	45107	1178	42457	273283;273284	366570;366571;366572	366571			3	
SFEVIKVIHGK	2	Acetyl (K)	1297.7394	0.73942221	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		70.555	61.091	2;3	2.3186E-10	33111	160513_QHF_FH_JSI11Kac_6	125.48	96.007			0.31018	0.29948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31018	0.29948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79988000	64245000	15743000	0	0	0	0	0	0	79988000	64245000	15743000	0	0	0	45108	2660	42458	273285;273286	366573;366574	366573	2618		1	
SFEWLSQMR	0	Unmodified	1182.5492	0.5491786	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.87	73.87	2	1.5994E-05	65911	160511_QHF_FH_JSI11i_3	135.83	97.538			2.2053	2.0311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2053	2.0311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90547000	35823000	54723000	0	0	0	0	0	0	90547000	35823000	54723000	0	0	0	45109	2517	42459	273287;273288	366575;366576	366575			2	
SFFDPTSQHR	0	Unmodified	1220.5574	0.5574351	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0		By MS/MS			3	0			2								2			33.006	31.606	2;3	9.9766E-05	26393	160511_QHF_FH_JSI10i_3	60.167	55.187			1.7034	2.028	55.295	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7034	2.028	55.295	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39655000	18903000	20752000	0	0	0	39655000	18903000	20752000	0	0	0	0	0	0	45110	3356	42460	273289;273290	366577;366578	366577			2	
SFFEGHFK	1	Unmodified	997.46577	0.46576654	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	38.386	37.599	2;3	0.00071124	31786	160511_QHF_FH_JSI12i_3	68.016	56.852			0.91615	0.87631	4.2661	4	0	Median	1.0886	0.87697	NaN	1	0	Median	0.76705	0.87565	NaN	1	0	Median	1.0078	0.94083	NaN	1	0	Median	0.83281	0.85113	NaN	1	0	Median	602680000	314250000	288430000	96341000	42899000	53442000	110520000	54880000	55639000	141280000	65210000	76072000	254540000	151260000	103280000	45111	1892	42461	273291;273292;273293;273294;273295	366579;366580;366581;366582;366583;366584;366585;366586;366587	366586			9	
SFFGPLELVEK	1	Unmodified	1264.6703	0.67033959	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	95.155	94.939	2	4.6914E-05	83422	160511_QHF_FH_JSI11i_2	96.015	73.867			1.0335	0.96938	18.79	6	0	Median	1.1654	1.0225	NaN	1	0	Median	0.74409	0.91902	NaN	1	0	Median	1.1056	1.0738	22.819	2	0	Median	1.0593	1.1353	30.508	2	0	Median	141440000	63731000	77712000	17237000	6726000	10511000	29253000	14251000	15002000	50637000	21459000	29179000	44316000	21296000	23020000	45112	4255	42462	273296;273297;273298;273299;273300;273301	366588;366589;366590;366591;366592;366593;366594;366595	366592			6	
SFFLGQGLSALLPCVLALVQGVGR	0	Unmodified	2501.3828	0.38283554	4820	Q9HAB3;Q9NWF4	SLC52A2;SLC52A1	Solute carrier family 52, riboflavin transporter, member 2;Solute carrier family 52, riboflavin transporter, member 1	yes	no	0	0	0	0		By MS/MS			16	0									1		1			103.83	98.11	3	2.1096E-18	58087	160513_QHF_FH_JSI10Kac_6	107.25	75.428			0.81909	0.95977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81909	0.95977	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173180000	90923000	82257000	0	0	0	173180000	90923000	82257000	0	0	0	0	0	0	45113	4820	42463	273302	366596;366597	366597			2	
SFFQIMFK	1	Unmodified	1046.5259	0.52592396	5525	Q9Y2P8	RCL1	RNA 3'-terminal phosphate cyclase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	87.465	83.22	2	0.00050914	40911	160513_QHF_FH_JSI12Kac_6	111.82	98.097			0.89247	0.98112	23.252	7	1	Median	0.99091	0.84071	39.727	2	1	Median	0.83354	0.98112	NaN	1	0	Median	1.004	0.97072	18.695	2	0	Median	0.96384	1.0034	30.708	2	0	Median	213640000	107200000	106440000	51570000	25045000	26525000	16146000	7231600	8914300	57346000	28611000	28734000	88574000	46307000	42267000	45114	5525	42464	273303;273304;273305;273306;273307;273308;273309	366598;366599;366600;366601;366602;366603;366604	366604			7	
SFFSEIISSISDVK	1	Unmodified	1557.7926	0.79263957	2052;3018	P63151;Q00005;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	102.28	102.19	2;3	4.1908E-81	83000	160511_QHF_FH_JSI9i_3	291.66	273.8			0.88801	0.85825	24.874	8	0	Median	0.96684	0.8004	8.4883	2	0	Median	0.84729	0.98127	7.6266	2	0	Median	0.94685	0.90162	12.386	2	0	Median	0.63964	0.63588	43.792	2	0	Median	1308100000	668740000	639370000	155330000	73473000	81862000	262970000	142340000	120640000	685260000	338300000	346960000	204550000	114630000	89916000	45115	2052;3018	42465	273310;273311;273312;273313;273314;273315;273316;273317	366605;366606;366607;366608;366609;366610;366611;366612;366613;366614;366615;366616	366613			12	
SFFSGTQER	0	Unmodified	1057.4829	0.48287317	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		27.115	26.372	2	0.023898	21833	160511_QHF_FH_JSI10i_3	49.418	15.621			0.55417	0.68114	44.706	3	3	Median	NaN	NaN	NaN	0	0	Median	0.63587	0.74288	12.27	2	2	Median	0.38208	0.34755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98200000	65370000	32830000	0	0	0	49472000	28938000	20533000	48729000	36432000	12297000	0	0	0	45116	1873	42466	273318;273319;273320	366617;366618;366619	366618			3	
SFFTPGKPK	2	Unmodified	1007.544	0.54401687	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	28.2	27.584	2;3	0.00028948	22914	160511_QHF_FH_JSI12i_3	76.064	70.029			0.83281	0.8248	26.7	9	4	Median	0.74013	0.59045	16.782	2	1	Median	0.67139	0.77548	8.7192	2	1	Median	0.99002	0.93435	12.189	2	0	Median	0.84309	0.84532	39.131	3	2	Median	964830000	583230000	381600000	304850000	163540000	141310000	183630000	113540000	70100000	213620000	126810000	86816000	262720000	179350000	83375000	45117	4988	42467	273321;273322;273323;273324;273325;273326;273327;273328;273329	366620;366621;366622;366623;366624;366625;366626;366627;366628;366629;366630;366631	366628			12	
SFFTPGKPK	2	Acetyl (K)	1049.5546	0.55458155	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.748							2	4	4	2	3	2	3	57.091	46.951	2	0.00030044	24059	160513_QHF_FH_JSI12Kac_5	103.56	93.652			1.0136	1.0038	113.58	10	2	Median	1.1235	0.96242	2.5674	2	0	Median	0.78999	0.94103	132.77	3	1	Median	1.0746	1.0658	5.0954	2	0	Median	0.98321	1.0333	137.57	3	1	Plateau	157650000	81587000	76063000	32768000	15152000	17616000	38260000	22407000	15853000	40011000	20356000	19655000	46610000	23672000	22939000	45118	4988	42467	273330;273331;273332;273333;273334;273335;273336;273337;273338;273339	366632;366633;366634;366635;366636;366637;366638;366639;366640;366641;366642;366643;366644;366645;366646;366647	366641	3289		16	
SFGASGGYIGGK	1	Unmodified	1099.5298	0.52982336	273	O15270	SPTLC2	Serine palmitoyltransferase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	33.805	33.694	2	0.0011411	28578	160511_QHF_FH_JSI12i_3	67.334	40.95			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45119	273	42468	273340	366648	366648			1	
SFGASGGYIGGKK	2	Unmodified	1227.6248	0.62478638	273	O15270	SPTLC2	Serine palmitoyltransferase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.362	24.023	2	0.0015715	19437	160511_QHF_FH_JSI9i_3	65.347	37.605			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45120	273	42469	273341	366649	366649			1	
SFGDPAKPR	1	Acetyl (K)	1015.5087	0.50869399	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	1	2	36.581	27.069	2	0.00013509	15832	160513_QHF_FH_JSI10Kac_4	114.39	89.442			0.81081	0.90687	3.7494	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75653	0.907	NaN	1	0	Median	0.93594	0.90674	NaN	1	0	Median	0.81081	0.89233	6.2898	2	0	Median	126950000	69493000	57456000	0	0	0	45091000	26293000	18798000	37625000	20488000	17137000	44233000	22712000	21521000	45121	5621	42470	273342;273343;273344;273345	366650;366651;366652	366650	3505		3	
SFGGGMNLSSK	1	Unmodified	1083.5019	0.50189405	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	36.02	35.491	2	2.206E-05	30109	160511_QHF_FH_JSI12i_3	133.81	62.895			1.1173	1.0699	44.867	3	2	Median	2.691	2.236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1173	1.0699	NaN	1	1	Median	0.95865	0.99295	NaN	1	1	Median	941290000	359090000	582200000	45940000	9181800	36758000	0	0	0	434500000	178770000	255730000	460860000	171140000	289710000	45122	527	42471	273346;273347;273348	366653;366654;366655	366655			3	
SFGGGTGSGFTSLLMER	0	Unmodified	1702.7985	0.79847001	27	A6NHL2	TUBAL3	Tubulin alpha chain-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			84.806	83.873	2	1.543E-07	68788	160511_QHF_FH_JSI9i_3	128.54	111.91			0.9368	0.92205	78.982	2	0	Median	0.64243	0.52748	NaN	1	0	Median	1.3661	1.6118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34747000	18550000	16197000	18677000	11937000	6740400	16070000	6613400	9456300	0	0	0	0	0	0	45123	27	42472	273349;273350	366656;366657	366656			2	
SFGHFPGPEFLDVEK	1	Unmodified	1704.8148	0.814772	3431	Q8IWW6	ARHGAP12	Rho GTPase-activating protein 12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.386	80.265	3	2.3388E-05	69671	160511_QHF_FH_JSI12i_3	95.428	85.679			0.92216	0.88587	22.825	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1134	1.041	NaN	1	0	Median	0.76377	0.75384	NaN	1	0	Median	83165000	44162000	39003000	0	0	0	0	0	0	50268000	24349000	25918000	32898000	19813000	13085000	45124	3431	42473	273351;273352	366658;366659;366660;366661	366661			4	
SFGIEDK	1	Unmodified	794.38103	0.38103386	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									1	1	2	26.852	26.269	2	0.040604	23123	160511_QHF_FH_JSI10i_1	47.082	24.062			1.5228	1.689	94.706	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0129	1.2071	NaN	1	0	Median	6.0666	5.9138	NaN	1	0	Median	1.1468	1.2379	91.45	2	1	Median	239500000	71848000	167660000	0	0	0	60605000	28309000	32296000	90301000	9774500	80527000	88597000	33764000	54833000	45125	3896	42474	273353;273354;273355;273356	366662;366663	366663			2	
SFGMTPVLPAFAGHVPEAVTR	0	Unmodified	2183.1197	0.11974457	1834	P54802	NAGLU	Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			92.536	91.517	3	1.6409E-05	76422	160511_QHF_FH_JSI10i_3	72.09	62.242			0.9318	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9318	1.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20953000	10470000	10482000	0	0	0	20953000	10470000	10482000	0	0	0	0	0	0	45126	1834	42475	273357	366664	366664			1	
SFGNPSLDER	0	Unmodified	1120.5149	0.51490158	470	O75063	FAM20B	Glycosaminoglycan xylosylkinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		31.031	30.651	2	0.007173	26825	160511_QHF_FH_JSI10i_2	53.327	41.558			0.84972	0.86489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84972	0.86489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27637000	15133000	12504000	0	0	0	0	0	0	27637000	15133000	12504000	0	0	0	45127	470	42476	273358;273359;273360	366665;366666;366667	366667			3	
SFGQMLLK	1	Unmodified	922.49462	0.49462383	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.89	56.057	2	0.0010939	47995	160511_QHF_FH_JSI12i_3	94.114	54.572			1.0491	1.0217	1.8519	4	0	Median	1.291	1.0417	NaN	1	0	Median	0.90402	1.0274	NaN	1	0	Median	1.071	0.99701	NaN	1	0	Median	1.0276	1.016	NaN	1	0	Median	512570000	255380000	257190000	84457000	33650000	50807000	100420000	48199000	52219000	111130000	56565000	54563000	216570000	116970000	99599000	45128	316	42477	273361;273362;273363;273364	366668;366669;366670;366671;366672	366672			5	
SFGSAQEFAWAHDSSEYAIR	0	Unmodified	2258.0029	0.0028601316	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	2	3	3	4	72.801	70.3	2;3	1.0991E-68	63278	160511_QHF_FH_JSI11i_3	238.83	233.56			0.98519	1.0312	24.648	12	1	Median	1.395	1.2037	16.167	2	0	Median	0.85491	1.0607	18.323	3	0	Median	1.0072	0.93255	9.6775	3	0	Plateau	0.88079	0.92841	40.878	4	1	Median	2249200000	1101100000	1148100000	237790000	92339000	145450000	290320000	151270000	139050000	958850000	480780000	478070000	762240000	376730000	385510000	45129	1438	42478	273365;273366;273367;273368;273369;273370;273371;273372;273373;273374;273375;273376	366673;366674;366675;366676;366677;366678;366679;366680;366681;366682;366683;366684;366685;366686;366687;366688;366689;366690;366691	366675			19	
SFGSTCQLSEK	1	Unmodified	1242.5551	0.55505184	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	27.533	26.243	2	4.4943E-05	21959	160511_QHF_FH_JSI12i_2	96.342	81.675			1.3677	1.4466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3677	1.4466	NaN	1	0	Median	23513000	11008000	12505000	0	0	0	0	0	0	0	0	0	23513000	11008000	12505000	45130	999	42479	273377	366692;366693	366692			2	
SFGTGTHVK	1	Unmodified	932.47158	0.4715802	4887	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							2	2	4	4	10.334	10.166	2;3	0.00062933	7347	160511_QHF_FH_JSI12i_3	87.639	68.857			1.1643	0.96891	48.185	10	5	Median	1.1643	0.94386	3.1573	2	0	Median	0.81551	0.97267	NaN	1	0	Median	1.2075	1.1436	37.129	3	1	Median	1.0691	1.0754	76.402	4	4	Median	1722600000	796910000	925700000	151850000	64930000	86923000	92413000	46277000	46136000	442930000	182070000	260860000	1035400000	503640000	531780000	45131	4887	42480	273378;273379;273380;273381;273382;273383;273384;273385;273386;273387;273388;273389	366694;366695;366696;366697;366698;366699;366700;366701;366702;366703;366704;366705;366706	366704			13	
SFGTRPLSSGFSPEEAQQQDEEFEK	1	Unmodified	2829.2729	0.27294656	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.444	61.937	3	9.3674E-12	50850	160511_QHF_FH_JSI9i_3	97.974	91.879			1.0662	0.87402	NaN	1	0	Median	1.0662	0.87402	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40072000	14844000	25229000	40072000	14844000	25229000	0	0	0	0	0	0	0	0	0	45132	4581	42481	273390	366707;366708	366708			2	
SFHFDPLSSGSR	0	Unmodified	1335.6208	0.62076364	4579	Q9C0B5	ZDHHC5	Palmitoyltransferase ZDHHC5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.301	52.184	3	7.7674E-05	46187	160511_QHF_FH_JSI11i_3	72.34	56.968			0.99116	0.95705	4.9983	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0707	0.99148	NaN	1	0	Median	0.9175	0.92382	NaN	1	0	Median	96268000	51060000	45208000	0	0	0	0	0	0	44447000	21018000	23429000	51821000	30042000	21779000	45133	4579	42482	273391;273392	366709;366710;366711;366712	366710			4	
SFHIFYQLIEGASAEQK	1	Unmodified	1966.9789	0.97887721	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		85.755	78.438	2;3	3.9358E-16	44475	160513_QHF_FH_JSI10Kac_6	190.27	167.55			0.82928	0.8397	97.931	4	1	Median	1.2226	1.0635	NaN	1	0	Median	0.2707	0.31716	104.28	2	1	Median	1.434	1.3452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	954080000	583290000	370800000	349220000	176760000	172460000	429620000	304720000	124900000	175250000	101810000	73439000	0	0	0	45134	2332	42483	273393;273394;273395;273396	366713;366714;366715;366716;366717	366717			5	
SFHILAIATK	1	Unmodified	1099.639	0.63897988	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	4	4	4	5	64.162	58.958	2;3	7.4345E-06	32237	160513_QHF_FH_JSI10Kac_6	123.86	107.09			1.037	1.0853	19.505	17	2	Median	1.1186	0.92474	10.741	4	0	Median	0.92466	1.1043	4.1356	4	0	Median	1.3173	1.2468	19.389	4	1	Median	1.037	1.0769	18.124	5	1	Median	4503600000	1932400000	2571100000	1068900000	350010000	718870000	1148700000	593540000	555140000	1494400000	559720000	934640000	791640000	429170000	362480000	45135	4042	42484	273397;273398;273399;273400;273401;273402;273403;273404;273405;273406;273407;273408;273409;273410;273411;273412;273413	366718;366719;366720;366721;366722;366723;366724;366725;366726;366727;366728;366729;366730;366731;366732;366733;366734;366735;366736;366737;366738;366739;366740;366741;366742;366743;366744;366745;366746;366747;366748;366749	366749			32	
SFHNLMMSDK	1	Unmodified	1208.5318	0.53181397	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.43	3.5			6			1					3	3	1	36.117	35.716	2;3	0.00087407	30021	160511_QHF_FH_JSI10i_3	75.294	46.895			0.60191	0.61678	52.637	4	4	Median	NaN	NaN	NaN	0	0	Median	0.61416	0.69443	NaN	1	1	Median	0.99434	0.93799	76.056	2	2	Median	0.48368	0.51128	NaN	1	1	Median	125370000	67214000	58154000	0	0	0	31581000	15412000	16169000	72341000	36080000	36261000	21446000	15722000	5724200	45136	2547	42485	273414;273415;273416;273417;273418;273419;273420	366750;366751;366752;366753;366754;366755;366756	366754			7	
SFHPEQDAGK	1	Unmodified	1114.5043	0.5043369	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	10.465	10.21	2;3	6.9434E-13	8072	160511_QHF_FH_JSI10i_2	131.44	106.52			1.0386	1.0004	12.476	10	1	Median	0.98249	0.8597	0.40354	2	0	Median	0.66215	0.80898	NaN	1	0	Median	1.1136	1.1859	6.7162	4	1	Linear	1.0821	1.0151	7.555	3	0	Plateau	931100000	477950000	453150000	118980000	64222000	54755000	128190000	71992000	56199000	374610000	177330000	197290000	309320000	164410000	144910000	45137	4458	42486	273421;273422;273423;273424;273425;273426;273427;273428;273429;273430;273431;273432	366757;366758;366759;366760;366761;366762;366763;366764;366765;366766;366767;366768;366769;366770;366771;366772;366773	366769			16	
SFHSSSSSSSSSTSSSASR	0	Unmodified	1848.7722	0.77219149	5263	Q9UBY9	HSPB7	Heat shock protein beta-7	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				5.5941	5.0712	3	0.016271	3102	160511_QHF_FH_JSI9i_3	29.766	25.218			1.298	1.0669	NaN	1	0	Median	1.298	1.0669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45247000	21912000	23335000	45247000	21912000	23335000	0	0	0	0	0	0	0	0	0	45138	5263	42487	273433	366774	366774			1	
SFHTYDVQK	1	Unmodified	1123.5298	0.52982336	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	20.343	20.349	2;3	0.00082738	17113	160511_QHF_FH_JSI11i_3	78.334	52.598			1.0392	0.98025	2.4219	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0946	0.99718	NaN	1	1	Median	0.98661	0.9636	NaN	1	0	Median	84463000	42331000	42132000	0	0	0	0	0	0	40679000	19416000	21263000	43784000	22915000	20869000	45139	3676	42488	273434;273435;273436	366775;366776;366777;366778	366776			4	
SFIDPYQHIIVEHQYSHK	1	Acetyl (Protein N-term)	2282.112	0.11201665	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		12							6	5	4	5	4	73.939	70.457	3;4	1.8474E-17	35962	160513_QHF_FH_JSI9Kac_6	96.143	87.753			1.0597	1.101	68.638	18	4	Median	1.112	0.93751	72.077	5	1	Median	0.50279	1.2437	87.752	4	1	Linear	1.0169	1.0229	27.468	5	1	Median	1.1387	1.2395	80.97	4	1	Median	1308400000	596340000	712030000	298560000	117950000	180610000	357810000	143120000	214690000	456990000	239550000	217430000	195010000	95719000	99291000	45140	1604	42489	273437;273438;273439;273440;273441;273442;273443;273444;273445;273446;273447;273448;273449;273450;273451;273452;273453;273454	366779;366780;366781;366782;366783;366784;366785;366786;366787;366788;366789;366790;366791;366792;366793	366790			13	
SFIFEWIYNGFSSVLQFLGLYK	1	Acetyl (Protein N-term)	2699.3676	0.36756264	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	1	0	0		By MS/MS			16	0									3		3			109.75	104.03	2;3	2.0224E-46	61380	160513_QHF_FH_JSI10Kac_6	233.42	205.77			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18973000	18973000	0	0	0	0	18973000	18973000	0	0	0	0	0	0	0	45141	4941	42490	273455;273456;273457	366794;366795;366796	366794			3	
SFIFEWIYNGFSSVLQFLGLYKK	2	Acetyl (Protein N-term)	2827.4625	0.46252565	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	1	0	1		By MS/MS			16	0									1		1			108.18	102.46	3	1.5095E-60	60636	160513_QHF_FH_JSI10Kac_6	132.45	120.71			0.82083	0.95059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82083	0.95059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60873000	38733000	22140000	0	0	0	60873000	38733000	22140000	0	0	0	0	0	0	45142	4941	42491	273458	366797	366797			1	
SFINYQFMSSHIK	1	Unmodified	1600.7708	0.77079869	3303	Q86T24	ZBTB33	Transcriptional regulator Kaiso	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		68.29	67.303	3	3.8522E-05	59636	160511_QHF_FH_JSI11i_3	83.087	71.111			1.3671	1.2385	26.945	3	0	Plateau	1.3386	1.1033	NaN	1	0	Median	0.65805	0.76605	NaN	1	0	Median	1.3671	1.2961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111680000	46046000	65635000	40596000	15622000	24974000	28211000	11602000	16609000	42874000	18822000	24053000	0	0	0	45143	3303	42492	273459;273460;273461	366798;366799;366800;366801;366802	366798			5	
SFISGGSTITGVGK	1	Unmodified	1309.6878	0.68778057	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	50.122	50.004	2	2.8446E-21	42793	160511_QHF_FH_JSI12i_3	201.6	176.75			1.1442	1.107	14.885	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0653	0.99643	NaN	1	0	Median	1.229	1.2299	NaN	1	0	Median	308540000	118580000	189970000	0	0	0	0	0	0	95280000	32736000	62544000	213260000	85841000	127420000	45144	907	42493	273462;273463	366803;366804	366803			2	
SFITTDVNPYYDSFVR	0	Unmodified	1922.905	0.90504357	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	87.815	87.261	2;3	1.0765E-290	77535	160511_QHF_FH_JSI10i_2	377.87	351.83			0.93737	1.0742	13.368	8	0	Median	1.2537	1.0637	NaN	1	0	Median	0.91765	1.0967	1.5559	2	0	Median	1.0163	1.0064	16.196	2	0	Median	0.93933	1.0084	19.618	3	0	Median	832830000	397330000	435500000	140060000	60250000	79811000	208790000	104300000	104480000	255160000	117430000	137730000	228820000	115350000	113480000	45145	5215	42494	273464;273465;273466;273467;273468;273469;273470;273471	366805;366806;366807;366808;366809;366810;366811;366812;366813;366814;366815;366816;366817;366818;366819	366819			15	
SFKPDFGAESIYGGFLLGVR	1	Unmodified	2159.1051	0.10514036	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		13.8	4.84			1						5	2	2	2		92.757	86.854	2;3	1.2835E-11	48022	160513_QHF_FH_JSI10Kac_6	130.29	109.63			1.0965	1.3019	42.956	5	3	Median	1.6686	1.4088	NaN	1	1	Median	0.78067	0.92261	48.701	2	1	Median	1.4772	1.4209	52.917	2	1	Median	NaN	NaN	NaN	0	0	Median	805470000	360480000	444990000	218170000	103410000	114760000	302160000	137800000	164360000	285140000	119270000	165870000	0	0	0	45146	1438	42495	273472;273473;273474;273475;273476;273477	366820;366821;366822;366823;366824;366825;366826	366825			7	
SFLAAANEEILESIR	0	Unmodified	1661.8625	0.86245047	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	94.526	94.521	2	1.2666E-05	81960	160511_QHF_FH_JSI12i_3	105.17	80.827			1.4276	1.5527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4276	1.5527	NaN	1	1	Median	8252000	3248000	5004000	0	0	0	0	0	0	0	0	0	8252000	3248000	5004000	45147	2311	42496	273478;273479	366827;366828	366828			2	
SFLALDWDPDLKK	2	Unmodified	1546.8031	0.80314468	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	84.464	84.378	3	4.9062E-05	73221	160511_QHF_FH_JSI12i_3	80.469	75.153			1.8346	1.8204	2.2559	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9312	1.8497	NaN	1	0	Median	1.7429	1.7916	NaN	1	0	Median	36125000	15131000	20994000	0	0	0	0	0	0	10432000	4026100	6406300	25692000	11105000	14588000	45148	5626	42497	273480;273481	366829;366830	366829			2	
SFLAMVVDIVQELK	1	Unmodified	1590.8691	0.86911575	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	2	2	1	1	102.37	95.823	2;3	3.9774E-69	51091	160513_QHF_FH_JSI12Kac_6	231.17	206.87			0.71042	0.66849	32.217	6	0	Median	0.73961	0.637	12.081	2	0	Median	0.76923	0.91642	4.6571	2	0	Median	0.6669	0.6441	NaN	1	0	Median	0.35626	0.38744	NaN	1	0	Median	1471800000	856360000	615430000	483750000	295810000	187940000	922970000	513630000	409340000	4608000	2064700	2543300	60450000	44849000	15601000	45149	165	42498	273482;273483;273484;273485;273486;273487	366831;366832;366833;366834;366835;366836;366837;366838;366839;366840	366836			10	
SFLAMVVDIVQELK	1	Oxidation (M)	1606.864	0.86403038	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	1	0	By MS/MS			By matching	16	0									2	1			1	98.609	89.321	2	7.4263E-07	51340	160513_QHF_FH_JSI9Kac_6	105.65	81.9			0.52646	0.50057	64.647	2	0	Median	0.91939	0.79067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30146	0.31691	NaN	1	0	Median	134460000	92753000	41709000	86910000	60283000	26627000	0	0	0	0	0	0	47551000	32469000	15082000	45150	165	42498	273488;273489	366841	366841		72	1	
SFLDELGFLEIETPMMNIIPGGAVAK	1	Unmodified	2791.4176	0.41762565	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.985	94.264	3	1.4047E-07	55461	160513_QHF_FH_JSI10Kac_6	113.54	96.035			0.70664	0.84781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70664	0.84781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95789000	67827000	27962000	0	0	0	95789000	67827000	27962000	0	0	0	0	0	0	45151	2614	42499	273490	366842	366842			1	
SFLDSGYR	0	Unmodified	943.43995	0.43994572	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.46		5						4		2	3	2	2	39.659	34.141	2	0.0057335	29013	160511_QHF_FH_JSI12i_2	64.734	38.132			0.99985	0.9877	22.651	8	1	Median	1.5737	1.3388	43.639	2	1	Median	0.76189	0.91769	3.5662	2	0	Median	1.0365	1.0293	7.4788	2	0	Median	0.9728	1.0713	10.862	2	0	Median	876160000	409370000	466800000	134340000	43810000	90528000	224570000	123330000	101240000	295630000	146140000	149480000	221620000	96082000	125540000	45152	1139	42500	273491;273492;273493;273494;273495;273496;273497;273498;273499	366843;366844;366845;366846;366847;366848;366849;366850	366843			8	
SFLEDIRK	1	Unmodified	1006.5447	0.54474515	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	3	3	1	39.202	38.337	2;3	1.2032E-10	33474	160511_QHF_FH_JSI11i_3	168.23	121.17			0.92788	0.87707	11.991	10	0	Median	1.1423	0.91322	9.8031	3	0	Median	0.77143	0.86404	3.6094	3	0	Plateau	1.0827	1.012	9.7718	3	0	Plateau	0.68284	0.68354	NaN	1	0	Median	4498400000	2282300000	2216100000	1244400000	509980000	734380000	1245400000	668580000	576830000	1814200000	997600000	816550000	194440000	106130000	88311000	45153	1764	42501	273500;273501;273502;273503;273504;273505;273506;273507;273508;273509	366851;366852;366853;366854;366855;366856;366857;366858;366859;366860;366861;366862;366863;366864;366865;366866;366867	366852			17	
SFLEEVLASGLHSR	0	Unmodified	1543.7995	0.79945628	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		88.534	87.96	3	0.0028016	72201	160511_QHF_FH_JSI9i_3	43.813	38.534			1.0837	0.97251	19.981	2	0	Median	1.3184	1.1201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89076	0.84438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21419000	9043300	12375000	9950800	4021800	5929000	0	0	0	11468000	5021400	6446400	0	0	0	45154	4967	42502	273510;273511;273512	366868;366869	366869			2	
SFLEILHTYQK	1	Unmodified	1377.7293	0.72925145	490	O75182	SIN3B	Paired amphipathic helix protein Sin3b	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	71.117	70.307	3	0.00033786	62427	160511_QHF_FH_JSI11i_3	75.849	68.479			1.4679	1.4106	69.989	4	2	Median	1.1613	0.94579	NaN	1	0	Median	0.97125	1.1496	NaN	1	0	Median	1.8553	1.7309	NaN	1	1	Median	4.4009	4.5576	NaN	1	1	Median	132390000	63142000	69246000	23580000	11225000	12355000	18743000	9457100	9285700	67109000	36777000	30332000	22956000	5683600	17272000	45155	490	42503	273513;273514;273515;273516	366870;366871;366872	366870			3	
SFLENQKPTSEEITMIADQLNMEK	2	Unmodified	2795.3357	0.33574651	1062	P14859	POU2F1	POU domain, class 2, transcription factor 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			95.948	95.702	3	0.007089	84911	160511_QHF_FH_JSI10i_2	31.36	24.784			0.649	0.79574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.649	0.79574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22643000	9427600	13216000	0	0	0	22643000	9427600	13216000	0	0	0	0	0	0	45156	1062	42504	273517	366873	366873			1	
SFLESIDDALAEK	1	Unmodified	1436.7035	0.70349021	2703	Q15750	TAB1	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									2		1	86.456	85.651	2	9.7014E-05	76181	160511_QHF_FH_JSI10i_2	73.781	46.452			1.0822	1.2717	37.842	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77743	0.97313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5063	1.6619	NaN	1	0	Median	28976000	13779000	15196000	0	0	0	14081000	7232600	6848800	0	0	0	14894000	6546500	8347600	45157	2703	42505	273518;273519;273520	366874;366875;366876	366876			3	
SFLEYYDFYEVACK	1	Unmodified	1832.7967	0.79673867	4775	Q9H832	UBE2Z	Ubiquitin-conjugating enzyme E2 Z	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		96.165	95.894	2	0.0025198	84139	160511_QHF_FH_JSI11i_2	69.979	55.418			1.0423	1.0143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0423	1.0143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9616200	3739100	5877100	0	0	0	0	0	0	9616200	3739100	5877100	0	0	0	45158	4775	42506	273521	366877	366877			1	
SFLFEPVVK	1	Unmodified	1064.5906	0.59063271	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	76.379	75.497	2	0.0017874	66110	160511_QHF_FH_JSI11i_2	69.423	60.511			0.97935	1.0137	12.311	3	3	Median	1.281	1.0777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97935	1.0137	NaN	1	1	Median	0.7491	0.8502	NaN	1	1	Median	149970000	91234000	58731000	22502000	11456000	11046000	0	0	0	78812000	46425000	32386000	48652000	33353000	15299000	45159	3059	42507	273522;273523;273524;273525	366878;366879;366880;366881	366881			4	
SFLFQLLK	1	Unmodified	994.58515	0.5851534	2151	Q00535	CDK5	Cyclin-dependent-like kinase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	91.549	87.185	2	0.00032001	77287	160511_QHF_FH_JSI9i_3	112.17	23.229			0.88335	0.9502	9.1072	8	0	Median	1.1223	0.92733	1.6373	2	0	Median	0.84537	0.9986	3.8484	2	0	Median	0.95725	0.9021	14.577	2	0	Median	0.8369	0.87835	12.928	2	0	Median	950230000	474440000	475790000	221370000	103410000	117950000	244380000	121450000	122940000	262160000	125380000	136780000	222330000	124210000	98123000	45160	2151	42508	273526;273527;273528;273529;273530;273531;273532;273533	366882;366883;366884;366885;366886;366887;366888;366889;366890;366891;366892;366893;366894;366895	366888			14	
SFLFSSR	0	Acetyl (Protein N-term)	884.43922	0.43921744	4788	Q9H8S9	MOB1A	MOB kinase activator 1A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		4.5	6.06	3							1		2	1	1		81.12	78.169	1;2	0.0029881	72694	160511_QHF_FH_JSI11i_1	68.485	38.643			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45161	4788	42509	273534;273535;273536;273537	366896;366897;366898;366899	366896			4	
SFLGQLAK	1	Unmodified	862.49125	0.49125301	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	48.263	47.359	2	0.019371	40377	160511_QHF_FH_JSI12i_3	57.177	29.861			0.9865	1.0634	17.651	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8134	0.93863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1964	1.2048	NaN	1	1	Median	92651000	45344000	47307000	0	0	0	32454000	16937000	15516000	0	0	0	60197000	28407000	31790000	45162	5134	42510	273538;273539	366900;366901	366901			2	
SFLHGPELDK	1	Unmodified	1141.5768	0.57677356	1399	P32970	CD70	CD70 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	39.612	38.939	2;3	1.9262E-08	33085	160511_QHF_FH_JSI12i_3	126.49	83.267			1.2565	1.3574	28.852	8	2	Median	2.194	1.852	11.254	2	1	Median	1.1627	1.3574	3.7024	2	0	Median	1.2565	1.1945	1.6702	2	0	Median	1.1172	1.144	53.309	2	1	Median	1677400000	697150000	980280000	127090000	25819000	101270000	155920000	59953000	95969000	653220000	335570000	317650000	741200000	275810000	465390000	45163	1399	42511	273540;273541;273542;273543;273544;273545;273546;273547	366902;366903;366904;366905;366906;366907;366908;366909;366910;366911;366912	366910			11	
SFLHIGK	1	Unmodified	800.45447	0.45447358	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			33.42	32.004	2	0.016664	26693	160511_QHF_FH_JSI10i_3	62.714	27.609			0.85007	0.83073	6.1646	2	0	Median	0.97995	0.7953	NaN	1	0	Median	0.7374	0.86775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207160000	98406000	108750000	110820000	47609000	63207000	96340000	50796000	45543000	0	0	0	0	0	0	45164	427	42512	273548;273549	366913;366914;366915	366913			3	
SFLIHVK	1	Unmodified	842.50142	0.50142377	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	4	4	3	2	44.949	39.482	2;3	0.0036186	32907	160511_QHF_FH_JSI12i_3	60.76	40.205			0.97778	0.9901	25.667	13	2	Median	1.1371	0.93748	42.242	4	1	Median	0.82984	0.96961	13.634	4	1	Median	1.2391	1.176	23.814	3	0	Plateau	1.0369	1.1067	13.412	2	0	Median	482020000	230330000	251690000	166770000	72356000	94410000	129350000	63403000	65943000	77685000	33668000	44018000	108220000	60901000	47321000	45165	4936	42513	273550;273551;273552;273553;273554;273555;273556;273557;273558;273559;273560;273561;273562	366916;366917;366918;366919;366920;366921;366922;366923;366924;366925;366926;366927;366928;366929;366930;366931;366932	366930			17	
SFLIWVNEEDHTR	0	Unmodified	1644.7896	0.78961988	1019	P12532	CKMT1A	Creatine kinase U-type, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			72.89	71.441	3	0.025548	59829	160511_QHF_FH_JSI10i_3	24.53	18.093			0.62374	0.75575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62374	0.75575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5443600	2844400	2599200	0	0	0	5443600	2844400	2599200	0	0	0	0	0	0	45166	1019	42514	273563	366933	366933			1	
SFLKGLSDK	2	Acetyl (K)	1035.5601	0.56006086	4351	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	1	0	0	1				By MS/MS	15	0								1					1	62.183	51.449	2	0.0073688	26150	160513_QHF_FH_JSI12Kac_5	75.378	24.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	826190	826190	0	0	0	0	0	0	0	0	0	0	826190	826190	0	45167	4351	42515	273564	366934	366934	3141		1	
SFLKLYTTMPVAK	2	Acetyl (K)	1539.8371	0.83708734	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	84.836	75.456	2	2.9912E-12	40232	160513_QHF_FH_JSI12Kac_6	128.67	104.59			0.51078	0.52255	44.832	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.389	0.38058	NaN	1	0	Median	0.67069	0.71746	NaN	1	0	Median	69337000	45768000	23568000	0	0	0	0	0	0	40842000	29529000	11314000	28494000	16240000	12255000	45168	5494	42516	273565;273566	366935;366936	366936	3454		2	
SFLKLYTTMPVAK	2	Acetyl (K);Oxidation (M)	1555.832	0.83200197	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	1	1		By MS/MS			16	0									1		1			76.665	70.415	2	0.029097	38452	160513_QHF_FH_JSI10Kac_6	55.04	30.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45169	5494	42516	273567	366937	366937	3454		1	
SFLKPGEK	2	Unmodified	904.50182	0.5018177	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	16.236	15.399	2;3	0.0077096	11778	160511_QHF_FH_JSI12i_3	47.869	30.773			0.72915	0.84434	25.241	5	0	Median	1.1657	0.94362	1.8524	2	0	Median	0.7238	0.84133	0.5046	2	0	Median	NaN	NaN	NaN	0	0	Median	0.50232	0.51447	NaN	1	0	Median	1062900000	590650000	472210000	466310000	225640000	240670000	308520000	161050000	147470000	0	0	0	288030000	203970000	84068000	45170	3809	42517	273568;273569;273570;273571;273572	366938;366939;366940;366941;366942;366943;366944	366943			7	
SFLLDFMLR	0	Unmodified	1140.6002	0.60015154	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.578	87.857	2	0.00042091	50429	160513_QHF_FH_JSI10Kac_6	96.948	0			0.9506	1.1316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9506	1.1316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43750000	19180000	24570000	0	0	0	43750000	19180000	24570000	0	0	0	0	0	0	45171	3667	42518	273573	366945;366946	366945			2	
SFLLDLLNATGK	1	Unmodified	1290.7184	0.71835242	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	98.063	93.836	2	1.167E-110	88454	160511_QHF_FH_JSI12i_3	280.37	248.43			0.91144	0.91533	24.495	8	2	Median	1.2822	1.0586	2.1386	2	1	Median	0.66112	0.76944	16.102	2	0	Median	0.7477	0.71716	42.958	2	1	Median	0.91144	0.93297	13.692	2	0	Median	6962500000	3608800000	3353700000	2067800000	891190000	1176600000	1659600000	1087600000	571960000	1687900000	890220000	797730000	1547200000	739730000	807460000	45172	154	42519	273574;273575;273576;273577;273578;273579;273580;273581;273582	366947;366948;366949;366950;366951;366952;366953;366954;366955;366956;366957;366958;366959;366960;366961;366962	366957			16	
SFLLKDSETSQR	1	Acetyl (K)	1451.7256	0.72562264	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		2	2	1	2	60.291	49.579	2;3	6.5294E-31	27091	160513_QHF_FH_JSI11Kac_5	184.03	163.16			0.89411	1.0518	19.147	6	0	Median	1.2213	1.0401	NaN	1	0	Median	0.89411	1.0706	0.93024	2	0	Median	0.67541	0.66491	NaN	1	0	Median	0.91414	0.99869	12.257	2	0	Median	157130000	81234000	75892000	20017000	7168700	12848000	49358000	26655000	22704000	38288000	22743000	15545000	49463000	24668000	24795000	45173	1415	42520	273583;273584;273585;273586;273587;273588;273589	366963;366964;366965;366966;366967;366968;366969;366970;366971;366972;366973;366974;366975	366971	1375		13	
SFLLLAASTLLK	1	Unmodified	1275.7802	0.78022439	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.82	88.411	2	8.4477E-16	47922	160513_QHF_FH_JSI12Kac_6	141.88	121.01			0.86108	0.87211	52.367	4	1	Median	2.8944	2.4412	NaN	1	1	Median	0.70518	0.82944	NaN	1	0	Median	0.8965	0.86034	NaN	1	0	Median	0.82706	0.88405	NaN	1	0	Median	865860000	401100000	464760000	216120000	64185000	151930000	230380000	126010000	104370000	254600000	142850000	111750000	164750000	68057000	96697000	45174	3198	42521	273590;273591;273592;273593	366976;366977;366978;366979;366980	366979			5	
SFLPGEGPGR	0	Unmodified	1015.5087	0.50869399	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		36.121	35.312	2	0.0025251	31028	160511_QHF_FH_JSI10i_2	59.35	39.713			1.0742	1.1712	8.8462	3	0	Plateau	1.5038	1.3054	NaN	1	0	Median	0.91411	1.1002	NaN	1	0	Median	1.2622	1.2467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117580000	59240000	58342000	33925000	16015000	17910000	42444000	24918000	17526000	41214000	18308000	22907000	0	0	0	45175	11	42522	273594;273595;273596	366981;366982	366982			1	
SFLSEELGSEVLNLLTNK	1	Unmodified	1992.0415	0.041537049	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	102.83	102.82	3	4.5168E-12	89626	160511_QHF_FH_JSI12i_3	171.26	154.58			1.3264	1.3436	3.4133	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1267	1.3921	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3143	1.3217	2.3202	2	2	Median	196360000	93395000	102960000	0	0	0	19140000	8599800	10540000	0	0	0	177220000	84795000	92423000	45176	2279	42523	273597;273598;273599	366983;366984;366985	366984			3	
SFLSGLYEFPLNK	1	Unmodified	1513.7817	0.78168095	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	97.686	97.551	2	1.0804E-05	85522	160511_QHF_FH_JSI9i_2	86.014	70.385			0.95858	1.0461	24.932	5	2	Median	NaN	NaN	NaN	0	0	Median	0.81664	0.99245	25.478	2	1	Median	1.1512	1.0461	NaN	1	0	Median	0.95887	0.99482	42.615	2	1	Median	157720000	80241000	77479000	0	0	0	32278000	17300000	14978000	47346000	21724000	25622000	78096000	41217000	36879000	45177	5340	42524	273600;273601;273602;273603;273604;273605	366986;366987;366988;366989;366990;366991	366989			6	
SFLSQGQVLK	1	Unmodified	1105.6132	0.61315906	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.54	1	4	5					4	4	4	6	4	4	52.202	47.23	2	1.8942E-21	40660	160511_QHF_FH_JSI11i_2	183.43	150.82			0.95609	0.99875	14.793	18	4	Median	1.5476	1.2706	15.834	4	1	Linear	0.86591	1.0422	20.207	6	3	Median	0.98806	1.1005	8.0428	4	0	Linear	0.85192	0.93977	13.33	4	0	Median	6608000000	3263500000	3344500000	754090000	350840000	403250000	1366800000	694980000	671790000	2301200000	1098800000	1202400000	2186000000	1118900000	1067100000	45178	1612	42525	273606;273607;273608;273609;273610;273611;273612;273613;273614;273615;273616;273617;273618;273619;273620;273621;273622;273623	366992;366993;366994;366995;366996;366997;366998;366999;367000;367001;367002;367003;367004;367005;367006;367007;367008;367009;367010;367011;367012;367013;367014;367015;367016;367017;367018	367006			26	
SFLSTLPGQSLIDK	1	Unmodified	1504.8137	0.81370936	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	83.673	83.206	2	1.232E-09	72171	160511_QHF_FH_JSI12i_3	172.11	137.42			1.2089	1.2102	4.1371	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0173	1.2101	NaN	1	0	Median	1.3745	1.3001	NaN	1	0	Median	1.2089	1.2102	NaN	1	0	Median	225940000	97799000	128140000	0	0	0	18976000	8868700	10107000	84218000	38686000	45531000	122750000	50244000	72501000	45179	708	42526	273624;273625;273626	367019;367020;367021;367022;367023;367024	367024			6	
SFLTVPQGLVK	1	Unmodified	1187.6914	0.69140938	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	75.188	74.587	2	1.9135E-05	65624	160511_QHF_FH_JSI11i_2	103.55	89.34			0.87358	0.93798	27.969	8	1	Median	1.1825	0.98888	NaN	1	0	Median	0.68484	0.82475	19.666	2	0	Median	0.93951	0.94055	45.856	3	1	Median	0.87789	0.91809	2.6432	2	0	Median	416080000	202750000	213330000	62552000	25798000	36754000	78473000	45682000	32790000	154480000	76090000	78392000	120580000	55182000	65395000	45180	3918	42527	273627;273628;273629;273630;273631;273632;273633;273634;273635;273636	367025;367026;367027;367028;367029;367030;367031;367032;367033;367034;367035;367036;367037	367034			12	
SFLVASVLPGPDGNINSPTR	0	Unmodified	2040.064	0.064003825	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				87.915	86.743	2	0.0032316	71215	160511_QHF_FH_JSI9i_3	62.924	50.363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2582500	0	2582500	2582500	0	2582500	0	0	0	0	0	0	0	0	0	45181	3260	42528	273637;273638	367038;367039	367039			2	
SFLVGEAAR	0	Unmodified	948.50288	0.50288033	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		37.864	37.046	2	0.0019789	32556	160511_QHF_FH_JSI10i_2	66.692	52.535			1.1933	1.3146	16.458	3	0	Plateau	1.5586	1.3146	NaN	1	0	Median	1.3072	1.6162	NaN	1	0	Median	1.1623	1.1675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	239700000	118170000	121530000	53401000	24137000	29264000	87026000	39480000	47545000	99274000	54551000	44724000	0	0	0	45182	2624	42529	273639;273640;273641	367040;367041;367042	367042			3	
SFLYEIVSNK	1	Unmodified	1198.6234	0.6233894	5606	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		70.49	69.508	2	0.00093461	57054	160511_QHF_FH_JSI9i_3	68.893	64.281			0.93436	0.75583	35.207	3	2	Plateau	0.93436	0.75583	NaN	1	0	Median	0.93292	1.0823	NaN	1	1	Median	0.56824	0.53524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77227000	46953000	30274000	25396000	14879000	10517000	24493000	14409000	10083000	27338000	17665000	9673400	0	0	0	45183	5606	42530	273642;273643;273644	367043;367044;367045	367045			3	
SFLYPGSSTR	0	Unmodified	1113.5455	0.54547343	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.262	38.753	2	0.010519	32403	160511_QHF_FH_JSI10i_3	47.603	30.217			1.512	1.4521	12.256	2	1	Median	1.9554	1.5835	NaN	1	1	Median	1.1691	1.3315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65795000	28094000	37701000	31162000	11704000	19459000	34633000	16391000	18242000	0	0	0	0	0	0	45184	5154	42531	273645;273646	367046;367047	367046			2	
SFMALSQDIQK	1	Unmodified	1266.6278	0.62782285	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	6.21	3	4	4					3	2	3	3	6	4	62.275	58.585	2	1.1102E-29	51819	160511_QHF_FH_JSI10i_2	214.58	198.92			1.18	1.1699	37.486	16	4	Median	1.6965	1.4102	21.957	3	2	Median	1.2406	1.5043	23.029	3	0	Plateau	1.1234	1.1193	46.005	6	2	Median	1.1489	1.2079	41.852	4	0	Median	4528500000	2111500000	2417000000	677700000	290190000	387510000	731770000	396430000	335350000	1791300000	797090000	994170000	1327800000	627820000	699960000	45185	2536	42532	273647;273648;273649;273650;273651;273652;273653;273654;273655;273656;273657;273658;273659;273660;273661;273662	367048;367049;367050;367051;367052;367053;367054;367055;367056;367057;367058;367059;367060;367061;367062;367063;367064;367065;367066;367067;367068;367069;367070;367071;367072;367073;367074	367068			25	
SFMALSQDIQK	1	Oxidation (M)	1282.6227	0.62273747	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	5.96		3	1				1	7		3	2	1	6	54.592	47.433	2	8.2423E-05	25954	160513_QHF_FH_JSI11Kac_5	91.658	73.347			1.0774	1.1453	36.612	11	6	Median	1.4262	1.1986	39.484	2	1	Median	0.87053	1.0445	38.549	2	1	Median	1.8983	1.8615	NaN	1	0	Median	1.014	1.0864	38.633	6	4	Median	144410000	75385000	69024000	8503600	4276100	4227600	23046000	15044000	8002800	9906800	3818700	6088100	102950000	52247000	50706000	45186	2536	42532	273663;273664;273665;273666;273667;273668;273669;273670;273671;273672;273673;273674	367075;367076;367077;367078;367079;367080;367081;367082;367083;367084;367085;367086	367082		2001	12	
SFMDFGSWER	0	Unmodified	1260.5234	0.52335778	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			2								1	1		78.21	77.521	2	0.011086	65090	160511_QHF_FH_JSI10i_3	46.891	41.926			1.0522	1.1031	24.902	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0794	1.3155	NaN	1	0	Median	1.0256	0.925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46456000	25774000	20682000	0	0	0	6543700	2997500	3546200	39913000	22777000	17136000	0	0	0	45187	5229	42533	273675;273676	367087;367088	367088			2	
SFMESGGTVLSTNWSDVGK	1	Unmodified	2000.915	0.91495633	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.667	2	5	2							2	2	3	2	80.866	80.341	2	5.8626E-64	71711	160511_QHF_FH_JSI11i_3	261.27	240.05			0.92075	0.92532	56.566	8	4	Median	1.0861	0.94274	5.9297	2	2	Median	0.34582	0.40098	105.29	2	1	Median	0.95055	0.91555	8.2779	2	1	Median	0.92075	0.98803	5.981	2	0	Median	250150000	131640000	118510000	56361000	25044000	31317000	40617000	26278000	14339000	66698000	29480000	37217000	86480000	50839000	35641000	45188	5548	42534	273677;273678;273679;273680;273681;273682;273683;273684;273685	367089;367090;367091;367092;367093;367094;367095;367096;367097;367098;367099;367100;367101;367102;367103	367089			15	
SFMHVNTNANFYK	1	Oxidation (M)	1587.714	0.71401209	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.092	37.31	3	3.0629E-05	30442	160511_QHF_FH_JSI9i_3	90.861	86.059			1.2522	1.1911	37.659	4	2	Median	1.4849	1.2419	NaN	1	0	Median	1.3808	1.5788	NaN	1	1	Median	0.69755	0.64877	NaN	1	0	Median	1.1355	1.1422	NaN	1	1	Median	148020000	74379000	73638000	34921000	13922000	20999000	34955000	18358000	16598000	44953000	28324000	16629000	33188000	13776000	19412000	45189	1734	42535	273686;273687;273688;273689	367104;367105;367106;367107;367108	367107		1419	5	
SFMHVNTNANFYK	1	Unmodified	1571.7191	0.71909747	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	3	2	2	1	50.899	48.934	2;3	3.2039E-42	41012	160511_QHF_FH_JSI10i_3	183.66	169.69			0.87378	0.92543	16.964	8	0	Median	1.1276	0.94956	3.3575	3	0	Median	0.86882	1.0145	0.90041	2	0	Median	0.74666	0.7031	21.447	2	0	Median	0.87275	0.89636	NaN	1	0	Median	1191400000	583180000	608230000	308480000	137920000	170550000	260050000	144110000	115940000	352550000	164870000	187680000	270340000	136280000	134060000	45190	1734	42535	273690;273691;273692;273693;273694;273695;273696;273697	367109;367110;367111;367112;367113;367114;367115;367116;367117;367118;367119;367120;367121;367122;367123	367114			14	
SFMISADMAHAVHPNYLDK	1	Unmodified	2145.9976	0.99758052	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	71.506	70.924	4	1.0025E-08	61459	160511_QHF_FH_JSI12i_3	110.44	104.73			1.0768	1.2449	10.146	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92501	1.0329	NaN	1	0	Median	1.227	1.1476	NaN	1	0	Median	1.0768	1.2652	NaN	1	0	Median	143910000	62583000	81325000	0	0	0	21138000	7960500	13177000	50059000	20739000	29319000	72712000	33883000	38828000	45191	5393	42536	273698;273699;273700	367124;367125;367126;367127	367127			4	
SFMNNWEVYK	1	Unmodified	1316.586	0.58595803	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.56		5	2						1	1	1	3	3	66.122	64.3	2	4.5891E-19	57068	160511_QHF_FH_JSI10i_2	177.06	137.06			1.0249	1.0411	27.491	8	2	Median	1.1411	0.9851	NaN	1	0	Median	0.91263	1.1002	NaN	1	0	Median	0.92043	0.9413	34.453	3	1	Median	1.2091	1.1966	36.569	3	1	Median	1625800000	791240000	834520000	183440000	67312000	116130000	231620000	119430000	112190000	486920000	243800000	243120000	723780000	360700000	363080000	45192	897	42537	273701;273702;273703;273704;273705;273706;273707;273708	367128;367129;367130;367131;367132;367133;367134;367135;367136;367137;367138;367139	367137			12	
SFMNNWEVYK	1	Oxidation (M)	1332.5809	0.58087266	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	52.598	52.363	2	0.011209	44903	160511_QHF_FH_JSI12i_3	72.643	51.179			1.825	1.8683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.825	1.8683	NaN	1	1	Median	15682000	4383800	11298000	0	0	0	0	0	0	0	0	0	15682000	4383800	11298000	45193	897	42537	273709	367140	367140		463	1	
SFNALQEEK	1	Unmodified	1064.5138	0.51383895	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2								1	1	1	1	29.946	29.222	2	0.0028657	25795	160511_QHF_FH_JSI10i_1	62.823	32.747			0.87425	0.9731	13.734	4	1	Median	0.86322	0.74606	NaN	1	1	Median	0.83748	0.99686	NaN	1	0	Median	0.98853	0.971	NaN	1	0	Median	0.88542	0.9752	NaN	1	0	Median	3578500000	2014600000	1563900000	56139000	21205000	34934000	1817300000	960520000	856780000	1629600000	984900000	644730000	75423000	47994000	27429000	45194	2574	42538	273710;273711;273712;273713	367141;367142;367143;367144	367143			4	
SFNFYVFPK	1	Unmodified	1147.5702	0.57023162	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	1	2	83.025	76.21	2	0.00010914	40732	160513_QHF_FH_JSI11Kac_6	126.52	92.135			1.0041	0.97675	11.977	5	0	Median	1.0041	0.84866	NaN	1	0	Median	0.74244	0.88827	NaN	1	0	Median	1.137	1.0936	NaN	1	0	Median	0.9659	1.0402	8.9016	2	0	Median	498920000	257800000	241120000	126170000	67657000	58517000	139670000	83463000	56204000	121760000	52189000	69570000	111320000	54488000	56831000	45195	695	42539	273714;273715;273716;273717;273718	367145;367146;367147;367148;367149;367150;367151;367152	367146			7	
SFNGSLK	1	Unmodified	751.38645	0.38645359	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0.707	1	2	1							1	1	2		17.708	17.177	2	0.011246	13769	160511_QHF_FH_JSI11i_2	71.342	45.892			1.1841	1.057	19.312	4	0	Median	1.2297	1.005	NaN	1	0	Median	1.2186	1.5194	NaN	1	0	Median	1.0734	1.057	4.5818	2	0	Median	NaN	NaN	NaN	0	0	Median	625760000	323060000	302700000	34300000	14274000	20026000	173160000	98421000	74738000	418300000	210360000	207930000	0	0	0	45196	1090	42540	273719;273720;273721;273722	367153;367154;367155;367156	367155			4	
SFNLIIAK	1	Unmodified	904.5382	0.53820321	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.61		4	3					1	4	2	3	3	4	67.682	63.179	2	0.0007934	34658	160513_QHF_FH_JSI10Kac_6	105.57	59.85			1.1428	1.1356	19.89	11	3	Median	1.4427	1.2411	12.565	2	0	Median	0.85256	1.0238	21.147	3	1	Median	1.0986	1.0702	18.598	3	1	Median	1.2095	1.3057	3.5925	3	1	Plateau	384810000	201260000	183560000	48874000	23313000	25562000	73631000	45107000	28525000	139400000	70247000	69157000	122910000	62590000	60317000	45197	1240	42541	273723;273724;273725;273726;273727;273728;273729;273730;273731;273732;273733;273734	367157;367158;367159;367160;367161;367162;367163;367164;367165;367166;367167;367168;367169	367169			13	
SFNLPMLMLGGGGYTIR	0	Unmodified	1825.9219	0.92189638	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		95.383	87.339	2;3	0.0014266	51370	160513_QHF_FH_JSI10Kac_6	121.48	89.845			1.0088	0.85691	24.397	3	1	Median	1.0088	0.85691	NaN	1	0	Median	0.71592	0.8413	NaN	1	1	Median	1.3588	1.2952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	316000000	169080000	146920000	32882000	16964000	15918000	232290000	133340000	98949000	50834000	18776000	32058000	0	0	0	45198	2438	42542	273735;273736;273737	367170;367171;367172	367172			1	
SFNLSALEK	1	Unmodified	1007.5288	0.52876073	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	60.755	60.206	2	0.00036231	53000	160511_QHF_FH_JSI9i_2	86.136	64.608			0.52401	0.57545	44.348	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.66215	0.80252	NaN	1	1	Median	0.49967	0.50293	NaN	1	1	Median	1.203	1.2205	NaN	1	1	Median	719150000	438130000	281020000	0	0	0	227820000	128000000	99822000	342200000	233820000	108380000	149130000	76312000	72815000	45199	1040	42543	273738;273739;273740;273741;273742	367173;367174;367175;367176;367177	367174			5	
SFNYSPNSSTSEVSSTSASK	1	Unmodified	2065.9076	0.90762234	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	39.02	38.415	2	0.00014682	34873	160511_QHF_FH_JSI12i_1	67.275	62.121			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45200	2984	42544	273743	367178	367178			1	
SFPAAIEHTIQWAR	0	Unmodified	1625.8314	0.83142511	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				76.494	75.056	3	0.019193	61810	160511_QHF_FH_JSI9i_3	38.376	29.325			0.94174	0.78731	NaN	1	1	Median	0.94174	0.78731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33607000	21652000	11954000	33607000	21652000	11954000	0	0	0	0	0	0	0	0	0	45201	5	42545	273744	367179	367179			1	
SFPDFPTPGVVFR	0	Unmodified	1464.7402	0.74015049	877	P07741	APRT	Adenine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	95.099	94.788	2;3	1.3289E-22	83963	160511_QHF_FH_JSI10i_2	180.67	167.72			1.0053	0.95987	17.482	10	2	Median	1.4155	1.1751	25.281	2	0	Median	0.88235	1.0596	17.312	2	1	Median	0.95176	0.92079	2.593	3	1	Median	1.0201	1.0185	21.303	3	0	Median	3575000000	1814500000	1760500000	522280000	227710000	294570000	735150000	410350000	324790000	1242700000	654590000	588140000	1074800000	521800000	552990000	45202	877	42546	273745;273746;273747;273748;273749;273750;273751;273752;273753;273754	367180;367181;367182;367183;367184;367185;367186;367187;367188;367189;367190;367191;367192;367193;367194;367195;367196;367197;367198;367199;367200;367201;367202;367203;367204	367198			25	
SFPDQFSTGEPPALDEVPEVR	0	Unmodified	2316.091	0.091006437	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				86.877	86.053	2	1.0512E-06	76582	160511_QHF_FH_JSI9i_1	83.729	70.05			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45203	594	42547	273755	367205	367205			1	
SFPFVSK	1	Unmodified	810.42759	0.42759012	1372;1296	P31327;P27708	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6	3	4	2					1	2	2	2	4	4	55.816	52.829	2	0.0055967	45494	160511_QHF_FH_JSI12i_2	94.262	88.782			0.96179	0.96987	9.726	12	2	Median	1.1528	0.96975	2.8663	2	0	Median	0.7738	0.92764	2.0886	2	0	Median	0.95848	0.95567	12.436	4	1	Median	0.96179	0.9967	10.844	4	1	Median	5618500000	2743400000	2875100000	601390000	277500000	323890000	829950000	477170000	352790000	2070400000	998150000	1072300000	2116800000	990620000	1126100000	45204	1372;1296	42548	273756;273757;273758;273759;273760;273761;273762;273763;273764;273765;273766;273767	367206;367207;367208;367209;367210;367211;367212;367213;367214;367215;367216;367217;367218;367219;367220;367221;367222;367223;367224;367225;367226;367227;367228;367229;367230;367231;367232;367233;367234;367235;367236	367215			31	
SFPGFQAFCETQGDR	0	Unmodified	1745.7468	0.74676879	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.261	72.261	2	0.0006739	64448	160511_QHF_FH_JSI11i_3	67.153	42.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45205	2175	42549	273768	367237	367237			1	
SFPHDVQFFDLR	0	Unmodified	1506.7256	0.72556306	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	77.543	77.41	3	5.5337E-05	67230	160511_QHF_FH_JSI12i_3	78.324	69.924			1.3256	1.3076	1.5776	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4156	1.3223	NaN	1	1	Median	1.2413	1.2931	NaN	1	0	Median	69319000	28208000	41112000	0	0	0	0	0	0	28927000	12203000	16725000	40392000	16005000	24387000	45206	4908	42550	273769;273770	367238;367239	367239			2	
SFPLHFDENSFFAGDK	1	Unmodified	1856.837	0.836964	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	87.601	87.317	2;3	1.0083E-30	77907	160511_QHF_FH_JSI11i_3	190.57	186.11			1.229	0.98585	19.776	4	0	Linear	0.86673	0.75854	NaN	1	0	Median	0.80543	0.95997	NaN	1	0	Median	1.1062	1.0124	NaN	1	0	Median	1.2352	1.2264	NaN	1	0	Median	280080000	138790000	141280000	18633000	8742100	9890700	18060000	7967200	10093000	91349000	41836000	49513000	152030000	80249000	71785000	45207	4109	42551	273771;273772;273773;273774;273775	367240;367241;367242;367243;367244;367245;367246;367247	367241			8	
SFPLHFDENSFFAGDKK	2	Unmodified	1984.9319	0.93192702	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	4	2	2	79.589	78.784	3;4	1.0618E-06	67928	160511_QHF_FH_JSI12i_3	109.38	104.38			0.8739	0.93736	11.384	9	1	Median	1.2987	1.0719	NaN	1	0	Median	0.79328	0.92504	13	4	1	Median	1.0744	1.004	9.7149	2	0	Median	0.84931	0.85697	4.1033	2	0	Median	838980000	418170000	420810000	32825000	16878000	15947000	159170000	81665000	77510000	370750000	178610000	192140000	276230000	141010000	135210000	45208	4109	42552	273776;273777;273778;273779;273780;273781;273782;273783;273784	367248;367249;367250;367251;367252;367253;367254;367255;367256;367257;367258	367258			10	
SFPPDAILFYIPQIVQALR	0	Unmodified	2187.2092	0.2092115	1536	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.98	96.258	3	0.0010243	56883	160513_QHF_FH_JSI10Kac_6	70.942	56.328			0.64065	0.75117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64065	0.75117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49603000	27748000	21855000	0	0	0	49603000	27748000	21855000	0	0	0	0	0	0	45209	1536	42553	273785	367259	367259			1	
SFPPLADR	0	Unmodified	901.46577	0.46576654	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	4.18		4	3					1		1		5	2	42.92	40.454	2	0.00063796	34674	160511_QHF_FH_JSI12i_3	101.64	29.623			1.2182	1.0893	12.351	5	3	Median	1.2785	1.0893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.05	1.0488	11.157	3	2	Median	1.2478	1.2954	NaN	1	0	Median	544960000	293780000	251180000	115690000	58415000	57274000	0	0	0	314040000	176910000	137130000	115240000	58459000	56778000	45210	2094	42554	273786;273787;273788;273789;273790;273791;273792;273793	367260;367261;367262;367263;367264;367265;367266;367267;367268	367268			9	
SFPPLADRFMNAVFFLLPK	1	Unmodified	2209.1758	0.17580288	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	99.836	91.402	3	2.1707E-06	55042	160513_QHF_FH_JSI10Kac_6	88.551	69.259			0.94219	1.0498	41.541	4	0	Median	1.9322	1.6564	NaN	1	0	Median	1.1779	1.3941	NaN	1	0	Median	0.72507	0.71265	NaN	1	0	Median	0.75362	0.79058	NaN	1	0	Median	675880000	324740000	351130000	119100000	41271000	77830000	388030000	184290000	203740000	43637000	27456000	16181000	125110000	71727000	53382000	45211	2094	42555	273794;273795;273796;273797	367269;367270;367271;367272;367273;367274	367274			6	
SFPRDELMPLESAYR	0	Unmodified	1809.872	0.8719693	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			71.895	70.439	3	0.0007048	59056	160511_QHF_FH_JSI10i_3	58.671	47.028			0.99447	1.1309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99447	1.1309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34506000	18916000	15590000	0	0	0	34506000	18916000	15590000	0	0	0	0	0	0	45212	561	42556	273798;273799	367275;367276	367275			2	
SFPSLGDLMSHLK	1	Unmodified	1430.7228	0.72278587	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	1	3	99.136	99.001	3	6.8152E-14	85521	160511_QHF_FH_JSI12i_3	129.37	86.559			1.1292	1.0049	18.37	5	1	Median	1.0984	0.90653	14.562	2	1	Median	0.71701	0.81511	NaN	1	0	Median	1.1292	1.0266	NaN	1	0	Median	1.2119	1.2666	NaN	1	0	Median	157220000	74233000	82983000	41011000	19369000	21641000	34278000	19171000	15106000	32968000	13833000	19134000	48960000	21859000	27101000	45213	1230	42557	273800;273801;273802;273803;273804;273805;273806	367277;367278;367279;367280;367281;367282;367283;367284;367285;367286;367287;367288;367289	367289			13	
SFPVNSDVGVLK	1	Unmodified	1260.6714	0.67140222	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.13	4	2	1				3	1		2	4	2	3	65.083	60.65	2	4.4605E-06	55196	160511_QHF_FH_JSI11i_1	123.63	81.027			0.94768	0.92725	20.739	11	2	Median	1.0732	0.89215	16.012	2	0	Median	0.78884	0.95763	20.656	4	1	Median	0.91902	0.89521	4.9732	2	0	Median	0.83079	0.88911	28.833	3	1	Plateau	1465700000	793640000	672090000	378240000	194550000	183690000	505140000	256980000	248160000	300010000	155320000	144690000	282330000	186780000	95548000	45214	1620	42558	273807;273808;273809;273810;273811;273812;273813;273814;273815;273816;273817	367290;367291;367292;367293;367294;367295;367296;367297;367298;367299;367300;367301;367302;367303;367304;367305;367306;367307	367291			18	
SFPWSVLVVDEAHR	0	Unmodified	1640.8311	0.83109076	3359	Q86WJ1	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	89.306	88.917	3	2.4935E-10	79233	160511_QHF_FH_JSI11i_3	121.76	110.07			1.2012	1.1175	23.323	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3819	1.5883	NaN	1	1	Median	1.2012	1.1175	NaN	1	0	Median	1.009	1.0216	NaN	1	0	Median	85595000	37224000	48371000	0	0	0	12139000	4560700	7578700	38404000	12402000	26002000	35052000	20261000	14791000	45215	3359	42559	273818;273819;273820	367308;367309;367310;367311;367312	367310			5	
SFQGDDSDLLLK	1	Unmodified	1336.6511	0.65106071	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		60.656	60.224	2	0.0036086	54661	160511_QHF_FH_JSI11i_1	57.401	38.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45216	5463	42560	273821	367313	367313			1	
SFQGVTGYLK	1	Unmodified	1098.571	0.5709599	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.628	55.685	2	0.00023931	49236	160511_QHF_FH_JSI10i_2	80.688	24.678			0.79675	0.94485	15.477	4	1	Linear	0.96655	0.80385	NaN	1	0	Median	0.69475	0.84893	NaN	1	0	Median	0.91371	0.91322	NaN	1	0	Median	0.57376	0.63827	NaN	1	1	Median	165210000	78520000	86688000	25391000	7876400	17514000	44812000	25249000	19563000	67040000	29091000	37949000	27965000	16303000	11661000	45217	1088	42561	273822;273823;273824;273825	367314;367315;367316;367317;367318	367318			4	
SFQIIAHLK	1	Unmodified	1055.6128	0.61276513	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	61.627	53.922	2;3	0.00081208	29389	160513_QHF_FH_JSI11Kac_6	68.893	63.905			0.95133	0.89624	39.754	5	1	Median	1.4739	1.245	58.689	2	1	Median	0.74685	0.89624	NaN	1	0	Median	1.6091	1.532	NaN	1	0	Median	0.73636	0.79454	NaN	1	0	Median	224700000	115710000	108990000	53138000	22874000	30264000	95719000	51252000	44466000	49697000	23237000	26460000	26146000	18350000	7796200	45218	3203	42562	273826;273827;273828;273829;273830	367319;367320;367321;367322	367319			3	
SFQKIQVR	1	Acetyl (K)	1046.5873	0.58727866	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	15.2	0.748							1	2	2		2	2	1	51.128	41.141	2	0.00075306	22392	160513_QHF_FH_JSI11Kac_6	111.95	60.16			0.93544	1.0789	71.097	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0694	1.2718	17.66	2	0	Median	0.34511	0.33639	14.766	2	0	Median	0.95531	1.0789	NaN	1	0	Median	174260000	112610000	61651000	0	0	0	51328000	25286000	26041000	116280000	85218000	31060000	6657000	2107700	4549300	45219	1979	42563	273831;273832;273833;273834;273835	367323;367324;367325	367323	2003		3	
SFQMQYNLR	0	Unmodified	1185.5601	0.56007764	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			9	7		1							1		2			51.49	50.542	2	0.0021594	44617	160511_QHF_FH_JSI10i_2	75.109	70.144			0.89952	1.1003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89952	1.1003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44014000	21712000	22301000	0	0	0	44014000	21712000	22301000	0	0	0	0	0	0	45220	3119	42564	273836;273837	367326;367327	367326			2	
SFQPDTGR	0	Unmodified	906.41954	0.41954463	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	13.584	13.371	2	0.0032463	10560	160511_QHF_FH_JSI12i_2	73.26	55.225			0.90075	0.89012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90075	0.89012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48049000	28315000	19734000	0	0	0	0	0	0	48049000	28315000	19734000	0	0	0	45221	1002	42565	273838;273839	367328;367329	367328			2	
SFQPDTGRIEVFR	0	Unmodified	1550.7841	0.78414057	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				57.397	55.841	3	0.00086565	45755	160511_QHF_FH_JSI9i_3	58.487	31.077			1.3704	1.1151	NaN	1	0	Median	1.3704	1.1151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80756000	32262000	48493000	80756000	32262000	48493000	0	0	0	0	0	0	0	0	0	45222	1002	42566	273840	367330	367330			1	
SFQQELDAR	0	Unmodified	1092.52	0.51998696	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			2	2	2	3	33.3	30.296	2	3.4317E-08	26703	160511_QHF_FH_JSI10i_2	163.16	126.97			1.1259	1.1336	15.51	8	0	Median	1.3203	1.1588	NaN	1	0	Median	0.94741	1.1548	21.024	2	0	Median	1.0472	1.0512	7.5556	2	0	Median	1.3004	1.4097	17.694	3	0	Median	666690000	304120000	362570000	99354000	42977000	56377000	92837000	55020000	37817000	275980000	115010000	160970000	198520000	91113000	107410000	45223	4292	42567	273841;273842;273843;273844;273845;273846;273847;273848;273849	367331;367332;367333;367334;367335;367336;367337;367338	367338			8	
SFQQSSLSR	0	Unmodified	1038.5094	0.50942227	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	2	3	2	18.615	18.111	2	4.3365E-08	14733	160511_QHF_FH_JSI12i_2	145.72	126.94			0.93363	0.94875	11.411	9	0	Median	1.145	0.95826	23.072	2	0	Median	0.80264	0.96834	7.8802	2	0	Median	1.03	0.96651	10.742	3	0	Median	0.84932	0.8998	7.4913	2	0	Median	2062300000	1116900000	945400000	398310000	204700000	193610000	369270000	234260000	135010000	697580000	362630000	334950000	597110000	315280000	281840000	45224	1556	42568	273850;273851;273852;273853;273854;273855;273856;273857;273858	367339;367340;367341;367342;367343;367344;367345;367346;367347;367348;367349	367342			11	
SFQTGTNAR	0	Unmodified	980.46756	0.46755746	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	10.122	9.6688	2	0.0034126	7239	160511_QHF_FH_JSI12i_2	60.436	18.934			0.95144	0.96109	8.6471	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91174	1.0882	NaN	1	0	Median	0.96422	0.96109	NaN	1	0	Median	0.8538	0.92149	NaN	1	0	Median	77800000	41170000	36629000	0	0	0	26323000	13324000	12999000	26839000	14370000	12470000	24637000	13476000	11161000	45225	700	42569	273859;273860;273861	367350	367350			1	
SFQVALHIYPMNPEIWK	1	Unmodified	2072.0554	0.055353395	3121	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			87.406	81.687	3	0.00012566	46054	160513_QHF_FH_JSI10Kac_6	79.489	67.186			0.65564	0.75565	15.362	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65564	0.75565	15.362	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	164560000	96141000	68420000	0	0	0	164560000	96141000	68420000	0	0	0	0	0	0	45226	3121	42570	273862;273863	367351;367352	367352			2	
SFRPGDIVLAK	1	Unmodified	1201.6819	0.68190733	5572	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							1	2	2		52.209	51.268	2;3	0.0049158	43045	160511_QHF_FH_JSI10i_3	45.879	35.356			0.95477	0.97887	14.865	5	0	Median	0.95477	0.77282	NaN	1	0	Median	0.90248	1.0529	10.314	2	0	Median	1.023	0.97181	11.553	2	0	Median	NaN	NaN	NaN	0	0	Median	355930000	186700000	169240000	36827000	18800000	18028000	101470000	53375000	48096000	217630000	114520000	103110000	0	0	0	45227	5572	42571	273864;273865;273866;273867;273868	367353;367354	367354			2	
SFSCSATLEVAGQLIHK	1	Unmodified	1846.9247	0.92473315	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.702	77.436	3	6.3112E-06	67226	160511_QHF_FH_JSI12i_3	94.487	75.655			0.78255	0.75489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78255	0.75489	NaN	1	1	Median	44699000	25488000	19211000	0	0	0	0	0	0	0	0	0	44699000	25488000	19211000	45228	834	42572	273869	367355	367355			1	
SFSDEQWYSFNDQHVSR	0	Unmodified	2130.9031	0.90314609	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			61.259	60.4	3	0.015006	53506	160511_QHF_FH_JSI10i_2	36.744	33.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45229	4152	42573	273870	367356	367356			1	
SFSDTLK	1	Unmodified	796.39668	0.39668393	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	2	1	24.987	24.192	2	0.01483	20826	160511_QHF_FH_JSI9i_1	65.252	22.252			0.81061	0.88125	21.31	5	1	Median	1.0906	0.90693	38.286	2	1	Median	0.75662	0.88125	NaN	1	0	Median	1.0085	1.0004	NaN	1	0	Median	0.70125	0.77108	NaN	1	0	Median	621580000	374410000	247160000	209260000	112960000	96297000	115000000	72138000	42858000	102680000	54688000	47991000	194640000	134630000	60015000	45230	4445	42574	273871;273872;273873;273874;273875;273876	367357;367358;367359;367360;367361;367362;367363	367361			7	
SFSEFGK	1	Unmodified	800.37047	0.37046918	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	30.388	29.73	2	0.045437	25079	160511_QHF_FH_JSI12i_2	44.692	34.942			0.94605	1.1157	18.614	6	0	Median	1.4028	1.2023	NaN	1	0	Median	0.95602	1.1746	NaN	1	0	Median	1.0688	1.0559	32.82	2	0	Median	0.87556	0.96	13.981	2	0	Median	1050300000	519530000	530760000	192940000	79836000	113110000	205500000	101930000	103580000	343600000	161130000	182470000	308250000	176640000	131610000	45231	326	42575	273877;273878;273879;273880;273881;273882	367364	367364			1	
SFSEFGKLER	1	Acetyl (K)	1240.6088	0.60880197	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		69.571	58.708	2	0.017383	31508	160513_QHF_FH_JSI11Kac_5	53.683	48.317			0.31691	0.31207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31691	0.31207	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5447300	4335300	1112000	0	0	0	0	0	0	5447300	4335300	1112000	0	0	0	45232	326	42576	273883	367365	367365	168		1	
SFSHSFSALAK	1	Unmodified	1180.5877	0.58767259	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.16	6.49			10						9	6	4	6	3	42.977	38.322	2;3	4.8655E-10	32126	160511_QHF_FH_JSI12i_3	113.63	113.63			0.87614	0.91601	51.092	18	8	Median	0.92114	0.79484	61.859	6	5	Median	0.9133	1.0639	28.569	4	1	Median	0.97387	0.9039	72.968	5	2	Median	0.81392	0.83029	10.53	3	0	Plateau	2712400000	1159500000	1552800000	1019100000	437580000	581550000	552410000	227210000	325200000	794690000	313660000	481020000	346160000	181100000	165060000	45233	2284	42577	273884;273885;273886;273887;273888;273889;273890;273891;273892;273893;273894;273895;273896;273897;273898;273899;273900;273901;273902	367366;367367;367368;367369;367370;367371;367372;367373;367374;367375;367376;367377;367378;367379;367380;367381;367382;367383;367384;367385;367386;367387;367388;367389;367390;367391;367392;367393;367394;367395;367396;367397;367398;367399	367394			34	
SFSHWSK	1	Unmodified	877.40825	0.40825167	3035	Q6DD87	ZNF787	Zinc finger protein 787	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			17.447	16.353	3	0.012744	13106	160511_QHF_FH_JSI9i_3	40.002	31.139			1.0441	1.0304	20.931	2	0	Median	1.4431	1.1948	NaN	1	0	Median	0.75535	0.88866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90701000	40251000	50450000	46502000	21084000	25418000	44199000	19167000	25032000	0	0	0	0	0	0	45234	3035	42578	273903;273904	367400	367400			1	
SFSLGDIYFK	1	Unmodified	1175.5863	0.58627561	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	85.943	83.542	2	7.1743E-05	74025	160511_QHF_FH_JSI12i_2	102.61	64.316			1.5198	1.6441	5.4574	5	5	Median	1.967	1.672	NaN	1	1	Median	1.3212	1.6441	NaN	1	1	Median	1.6745	1.6625	7.6156	2	2	Median	1.36	1.5229	NaN	1	1	Median	307070000	104360000	202710000	49444000	14433000	35011000	68253000	24784000	43469000	119220000	42895000	76324000	70155000	22248000	47907000	45235	1005	42579	273905;273906;273907;273908;273909	367401;367402;367403;367404;367405	367401			5	
SFSLKNVK	2	Acetyl (K)	963.53893	0.53893149	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		56.544	45.857	2	0.011011	25277	160513_QHF_FH_JSI11Kac_5	73.26	37.38			0.41377	0.42033	60.179	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98898	1.1403	3.6107	2	0	Median	0.40103	0.40247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14119000	8728200	5390300	0	0	0	6000100	2752700	3247400	8118400	5975500	2143000	0	0	0	45236	97	42580	273910;273911;273912	367406	367406	65		1	
SFSLLQEAIIPYIPTLITQLTQK	1	Unmodified	2616.4778	0.47784137	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.6	6.62		2	2						6	3	3	4		103.02	98.504	2;3	3.736E-45	57018	160513_QHF_FH_JSI10Kac_6	228.49	207.68			1.107	1.0688	31.54	10	9	Median	1.446	1.2256	5.5416	3	3	Median	0.67356	0.79009	6.2314	3	3	Median	1.107	1.0688	43.24	4	3	Median	NaN	NaN	NaN	0	0	Median	2635900000	1445600000	1190400000	493390000	168920000	324470000	2090300000	1252500000	837770000	52268000	24121000	28147000	0	0	0	45237	1844	42581	273913;273914;273915;273916;273917;273918;273919;273920;273921;273922	367407;367408;367409;367410;367411;367412;367413;367414;367415;367416	367416			10	
SFSMMGHAEQLGLIPR	0	Unmodified	1772.8702	0.87019516	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.007	76.589	3	0.012087	63054	160511_QHF_FH_JSI9i_3	46.408	35.464			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45238	4659	42582	273923	367417	367417			1	
SFSNAAR	0	Unmodified	751.3613	0.36130147	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.33	0.471		2	1							1	1		1	7.1803	6.9149	2	0.034652	4782	160511_QHF_FH_JSI9i_2	50.025	25.838			1.1356	1.4021	22.696	3	0	Plateau	1.6017	1.3673	NaN	1	0	Median	1.1356	1.4021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93933	0.9351	NaN	1	0	Median	558980000	258400000	300570000	194960000	83916000	111040000	208430000	92414000	116010000	0	0	0	155590000	82075000	73517000	45239	558	42583	273924;273925;273926	367418	367418			1	
SFSPLQPGQAPTGR	0	Unmodified	1441.7314	0.73137672	3259	Q7Z3C6	ATG9A	Autophagy-related protein 9A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.25	0.433		3	1									3	1	45.793	45.097	2	0.0006824	39789	160511_QHF_FH_JSI11i_3	89.283	52.758			1.5075	1.5202	53.333	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3877	2.2165	NaN	1	1	Median	0.9517	1.0426	NaN	1	0	Median	38608000	16863000	21745000	0	0	0	0	0	0	16062000	5280900	10782000	22546000	11582000	10964000	45240	3259	42584	273927;273928;273929;273930	367419;367420;367421;367422;367423;367424	367419			6	
SFSQEGR	0	Unmodified	809.36678	0.36678078	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	7.4875	7.2912	2	0.0058577	4932	160511_QHF_FH_JSI12i_2	81.119	49.054			1.0855	1.0778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0855	1.0778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102060000	48536000	53523000	0	0	0	0	0	0	102060000	48536000	53523000	0	0	0	45241	962	42585	273931;273932	367425;367426	367425			2	
SFSQPEAGGSHHK	1	Unmodified	1367.6218	0.62182627	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	7.7367	7.6479	2;3	2.5652E-05	5362	160511_QHF_FH_JSI11i_3	91.307	86.741			0.77231	0.63489	24.384	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.81443	0.94731	NaN	1	0	Median	0.73236	0.68121	NaN	1	0	Median	0.85814	0.89577	33.488	2	0	Median	197030000	109140000	87883000	0	0	0	32794000	19265000	13528000	111240000	58481000	52757000	52995000	31397000	21597000	45242	3788	42586	273933;273934;273935;273936;273937	367427;367428;367429;367430;367431;367432	367428			5	
SFSQSYVLVVHQR	0	Unmodified	1548.8049	0.80487601	5349	Q9UJW8	ZNF180	Zinc finger protein 180	yes	no	0	0	0	0	By MS/MS				16	0									1	1				58.67	49.547	3	0.027072	26318	160513_QHF_FH_JSI9Kac_6	23.956	10.277			1.2566	1.0735	NaN	1	1	Median	1.2566	1.0735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18992000	8945700	10046000	18992000	8945700	10046000	0	0	0	0	0	0	0	0	0	45243	5349	42587	273938	367433	367433			1	
SFSTALYGESDL	0	Unmodified	1288.5823	0.58231244	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.116	74.625	2	1.4079E-05	67938	160511_QHF_FH_JSI12i_1	114.99	107.42			0.76156	0.80283	61.563	4	0	Median	0.58861	0.48551	NaN	1	0	Median	0.5369	0.62339	NaN	1	0	Median	2.0008	1.9568	NaN	1	0	Median	0.98534	1.0339	NaN	1	0	Median	220570000	113180000	107390000	33724000	19479000	14245000	70435000	45639000	24796000	57038000	17572000	39467000	59373000	30492000	28881000	45244	361	42588	273939;273940;273941;273942	367434;367435;367436;367437;367438;367439	367436			6	
SFTASCPVSAFVPK	1	Unmodified	1496.7334	0.73335055	3108	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	71.262	69.969	2	6.1762E-10	60426	160511_QHF_FH_JSI12i_3	108.7	98.325			0.91357	0.98812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91357	0.98812	NaN	1	0	Median	32528000	17314000	15214000	0	0	0	0	0	0	0	0	0	32528000	17314000	15214000	45245	3108	42589	273943;273944	367440;367441	367441			2	
SFTETMSSLSPGK	1	Unmodified	1370.6388	0.63878147	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6.4	6.62	3						1	1		1	1	2	1	54.202	51.067	2	3.0468E-07	46113	160511_QHF_FH_JSI10i_1	183.33	161.34			1.1051	1.1587	15.54	4	1	Median	NaN	NaN	NaN	0	0	Median	0.97218	1.1353	NaN	1	1	Median	1.3203	1.2253	5.0311	2	0	Median	0.87869	0.88784	NaN	1	0	Median	150060000	64731000	85325000	0	0	0	57021000	29493000	27528000	68313000	22012000	46301000	24722000	13226000	11496000	45246	4834	42590	273945;273946;273947;273948;273949	367442;367443;367444;367445	367444			3	
SFTETMSSLSPGKPWQTK	2	Unmodified	2010.9721	0.97207728	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		62.993	62.993	2	1.3345E-50	56030	160511_QHF_FH_JSI11i_3	185.87	164.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45247	4834	42591	273950	367446	367446			1	
SFTFDYSYWSHTSTEDPQFASQQQVYR	0	Unmodified	3304.4374	0.43738613	390	O43896	KIF1C	Kinesin-like protein KIF1C	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	83.585	74.143	3	9.885E-117	39457	160513_QHF_FH_JSI12Kac_6	242.64	236.42			1.2792	1.3894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2792	1.3894	NaN	1	0	Median	21710000	12231000	9478200	0	0	0	0	0	0	0	0	0	21710000	12231000	9478200	45248	390	42592	273951	367447	367447			1	
SFTFVVFK	1	Unmodified	973.5273	0.52730417	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	81.894	77.021	2	7.9628E-07	38743	160513_QHF_FH_JSI12Kac_6	138.9	118.61			1.0648	1.0251	11.092	12	0	Median	1.2456	1.0427	2.1591	4	0	Median	0.85691	1.0032	5.3816	3	0	Median	1.1575	1.0937	3.9242	2	0	Median	0.92354	0.96944	18.187	3	0	Median	6036900000	2981700000	3055300000	1519200000	691860000	827360000	1765200000	947290000	817930000	1399200000	665560000	733630000	1353300000	676940000	676350000	45249	1704	42593	273952;273953;273954;273955;273956;273957;273958;273959;273960;273961;273962;273963;273964;273965	367448;367449;367450;367451;367452;367453;367454;367455;367456;367457;367458;367459;367460;367461;367462;367463	367461			16	
SFTGNFVIDENILK	1	Unmodified	1595.8195	0.81952302	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	3	3	90.473	89.92	2;3	8.8866E-30	78998	160511_QHF_FH_JSI11i_2	187.78	159.05			1.3859	1.4616	40.936	8	5	Median	2.1662	1.8838	33.401	2	2	Median	0.77085	0.925	62.224	2	1	Median	1.352	1.3429	25.919	2	1	Median	1.4105	1.5661	24.473	2	1	Median	389320000	147540000	241780000	60862000	24409000	36454000	51502000	28309000	23194000	130350000	40622000	89732000	146600000	54201000	92402000	45250	3175	42594	273966;273967;273968;273969;273970;273971;273972;273973;273974;273975	367464;367465;367466;367467;367468;367469;367470;367471;367472;367473;367474	367470			11	
SFTKDAHALIYK	2	Acetyl (K)	1434.7507	0.75071518	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		63.486	53.801	2;3	4.9574E-07	29140	160513_QHF_FH_JSI11Kac_6	110.92	102.32			0.11422	0.11165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11422	0.11165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11242000	10546000	695570	0	0	0	0	0	0	11242000	10546000	695570	0	0	0	45251	5128	42595	273976;273977	367475;367476	367475	3316		2	
SFTNYSGGYSADHPVIK	1	Unmodified	1841.8584	0.85842773	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	45.942	45.39	2;3	4.6477E-25	38698	160511_QHF_FH_JSI12i_3	143.86	126.49			0.94805	0.96089	14.756	5	1	Median	1.4176	1.2376	NaN	1	0	Median	0.8351	1.0353	NaN	1	0	Median	0.912	0.86839	1.1654	2	1	Median	0.94805	0.96089	NaN	1	0	Median	482490000	248850000	233630000	42012000	16547000	25465000	69688000	37355000	32333000	201710000	106250000	95456000	169080000	88697000	80381000	45252	2661	42596	273978;273979;273980;273981;273982;273983	367477;367478;367479;367480;367481;367482;367483;367484;367485	367485			8	
SFTPDHVVYAR	0	Unmodified	1290.6357	0.63568542	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	37.185	36.508	2;3	4.4542E-18	31744	160511_QHF_FH_JSI11i_3	161.28	145.62			0.99635	0.99766	8.7669	11	0	Median	1.1344	0.96915	10.384	2	0	Median	0.83691	1.0114	10.737	2	0	Median	0.99635	0.95845	5.0964	3	0	Plateau	0.98273	1.051	11.783	4	0	Median	1825600000	826680000	998900000	186380000	79022000	107360000	308380000	157800000	150580000	710920000	327090000	383840000	619890000	262770000	357130000	45253	3085	42597	273984;273985;273986;273987;273988;273989;273990;273991;273992;273993;273994	367486;367487;367488;367489;367490;367491;367492;367493;367494;367495;367496;367497;367498;367499;367500;367501;367502;367503;367504	367488			19	
SFTQAQLDGGLVLFSHR	0	Unmodified	1874.9639	0.96389585	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			82.728	81.43	3	5.5867E-07	68291	160511_QHF_FH_JSI10i_3	97.32	80.576			0.85602	0.83971	17.179	2	0	Median	1.1447	0.94817	NaN	1	0	Median	0.64012	0.74366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72665000	38563000	34102000	35359000	17779000	17581000	37305000	20784000	16521000	0	0	0	0	0	0	45254	3146	42598	273995;273996	367505;367506	367505			2	
SFTSEDDLVK	1	Unmodified	1139.5346	0.53463397	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	40.992	40.481	2	0.0042503	36643	160511_QHF_FH_JSI12i_1	66.568	49.182			1.1461	1.2683	6.1911	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1453	1.325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1469	1.214	NaN	1	1	Median	521650000	208610000	313030000	0	0	0	311900000	103690000	208210000	0	0	0	209750000	104930000	104820000	45255	107	42599	273997;273998	367507;367508	367507			2	
SFTSSYAISAANHVK	1	Unmodified	1581.7787	0.77872084	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			9						3	4	4	3	1	47.732	44.319	2;3	8.9228E-35	36315	160511_QHF_FH_JSI9i_3	162.68	144.37			0.94428	1.0279	63.062	8	2	Median	1.3877	1.1432	6.1482	2	0	Median	0.86926	1.0279	7.0302	2	0	Median	0.98662	0.93701	104.37	3	1	Median	0.56948	0.57982	NaN	1	1	Median	1101900000	581270000	520610000	276600000	116810000	159790000	253230000	125140000	128100000	463190000	282690000	180490000	108860000	56633000	52227000	45256	2535	42600	273999;274000;274001;274002;274003;274004;274005;274006;274007;274008;274009;274010	367509;367510;367511;367512;367513;367514;367515;367516;367517;367518;367519;367520;367521	367518			11	
SFTTTIHK	1	Unmodified	933.49198	0.4919813	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	5.82			13						5	5	3	7	3	19.307	16.929	2;3	0.0011683	14456	160511_QHF_FH_JSI10i_3	110.81	59.02			0.86522	0.73578	80.466	17	10	Median	0.86522	0.73578	68.077	5	2	Median	0.89227	1.0813	84.051	2	2	Median	0.7227	0.68317	53.787	7	4	Median	1.9148	1.966	158.02	3	2	Median	1590100000	720970000	869110000	178220000	87263000	90961000	167120000	102160000	64964000	772700000	349360000	423350000	472030000	182190000	289840000	45257	2379	42601	274011;274012;274013;274014;274015;274016;274017;274018;274019;274020;274021;274022;274023;274024;274025;274026;274027;274028	367522;367523;367524;367525;367526;367527;367528;367529;367530;367531;367532;367533;367534;367535;367536;367537;367538	367526			17	
SFTVDIR	0	Unmodified	836.43922	0.43921744	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.63	1	3						4		2	3	2	1	49.535	43.862	2	0.0055575	38780	160511_QHF_FH_JSI10i_2	94.407	25.018			0.95648	1.039	17.228	8	0	Median	1.1932	0.98463	38.376	2	0	Median	0.82124	1.0097	7.7965	3	0	Plateau	1.1321	1.1212	17.316	2	0	Median	0.97001	1.0692	NaN	1	0	Median	295550000	141650000	153900000	68185000	34492000	33693000	105510000	59504000	46006000	116600000	44920000	71679000	5253700	2733800	2519900	45258	2147	42602	274029;274030;274031;274032;274033;274034;274035;274036	367539;367540;367541;367542;367543;367544;367545	367543			7	
SFTVMELVK	1	Unmodified	1052.5576	0.55761802	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.722	74.872	2	3.855E-05	66656	160511_QHF_FH_JSI10i_2	99.136	73.241			1.0716	1.2095	14.754	4	2	Median	1.0932	0.91691	NaN	1	1	Median	1.0133	1.2424	NaN	1	0	Median	1.2673	1.2563	NaN	1	1	Median	1.0505	1.1775	NaN	1	0	Median	430950000	225710000	205230000	74771000	34153000	40619000	93937000	53136000	40801000	145050000	83214000	61839000	117190000	55209000	61977000	45259	2858	42603	274037;274038;274039;274040	367546;367547;367548;367549	367549			4	
SFVASNDEGVATVGLVSSTGPGGDR	0	Unmodified	2378.135	0.13499652	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	70.084	69.594	2	1.4486E-11	63370	160511_QHF_FH_JSI12i_1	123.36	115.26			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45260	236	42604	274041;274042	367550;367551	367551			2	
SFVAYEELIK	1	Acetyl (Protein N-term)	1239.6387	0.63870511	4078	Q96FX7	TRMT61A	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			101	100.89	2	4.2292E-07	89128	160511_QHF_FH_JSI9i_1	130.75	96.495			0.42294	0.41061	121.66	2	1	Median	0.2133	0.17371	NaN	1	1	Median	0.83862	0.97059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41400000	26626000	14774000	13991000	13171000	819550	27409000	13455000	13954000	0	0	0	0	0	0	45261	4078	42605	274043;274044	367552;367553	367553			2	
SFVEFILEPLYK	1	Unmodified	1483.7963	0.79626839	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.8	6.71		2	1						2		1	2	2	99.711	96.62	2	1.4008E-39	47430	160513_QHF_FH_JSI12Kac_6	196.7	176			0.77503	0.82481	13.606	5	2	Median	NaN	NaN	NaN	0	0	Median	0.70432	0.82481	NaN	1	1	Median	0.91614	0.88938	21.636	2	0	Median	0.84183	0.90597	14.551	2	1	Median	957960000	480200000	477750000	0	0	0	87785000	46236000	41549000	503940000	232470000	271470000	366230000	201500000	164730000	45262	2609	42606	274045;274046;274047;274048;274049	367554;367555;367556;367557;367558;367559	367557			5	
SFVEKVMQEQGTHPK	2	Acetyl (K)	1785.872	0.8719693	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		61.612	52.563	3	0.0001908	28550	160513_QHF_FH_JSI11Kac_6	81.651	75.991			0.58357	0.62257	128.98	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3136	1.5498	NaN	1	0	Median	0.25926	0.25009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39367000	27320000	12047000	0	0	0	16779000	8277800	8501600	22588000	19042000	3545400	0	0	0	45263	1436	42607	274050;274051	367560;367561	367561	1397;1412		2	
SFVELSGAER	0	Unmodified	1093.5404	0.54038805	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.79		4	1					2		1	1	2	3	44.498	40.901	2	6.4989E-05	35203	160511_QHF_FH_JSI11i_2	90.15	51.188			1.0262	1.1543	23.397	7	2	Median	1.4491	1.2334	NaN	1	1	Median	0.94527	1.1543	NaN	1	0	Median	0.83603	0.83052	30.573	2	0	Median	1.0411	1.162	20.714	3	1	Median	574130000	273350000	300790000	84718000	39320000	45398000	124470000	53734000	70738000	203600000	99070000	104530000	161340000	81223000	80119000	45264	2303	42608	274052;274053;274054;274055;274056;274057;274058	367562;367563;367564;367565;367566;367567;367568	367564			7	
SFVGKQFSANDK	2	Acetyl (K)	1368.6674	0.66737948	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							4	4		1	2	3	2	54.349	43.686	2	3.9706E-05	22495	160513_QHF_FH_JSI12Kac_5	97.456	75.37			0.75377	0.72141	41.104	6	0	Median	0.90583	0.75316	NaN	1	0	Median	0.95646	1.1271	10.767	2	0	Median	0.39727	0.39573	NaN	1	0	Median	0.56952	0.61811	15.765	2	0	Median	49482000	32792000	16690000	2239500	1237600	1001900	10107000	5193600	4913200	27757000	20507000	7250000	9378900	5854200	3524700	45265	1460	42609	274059;274060;274061;274062;274063;274064;274065;274066	367569;367570;367571;367572;367573;367574;367575;367576;367577;367578;367579;367580	367578	1446		11	
SFVIDHQR	0	Unmodified	1000.509	0.50902834	272	O15269	SPTLC1	Serine palmitoyltransferase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		18.614	18.614	2	0.0066274	15604	160511_QHF_FH_JSI11i_3	61.999	26.119			0.90798	0.8553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90798	0.8553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27334000	14141000	13193000	0	0	0	0	0	0	27334000	14141000	13193000	0	0	0	45266	272	42610	274067	367581	367581			1	
SFVKGECK	2	Acetyl (K)	995.47462	0.47461667	4104	Q96H79	ZC3HAV1L	Zinc finger CCCH-type antiviral protein 1-like	yes	yes	1	0	0	1			By MS/MS		14	0							2					2		27.942	19.933	2	0.040958	12514	160513_QHF_FH_JSI11Kac_4	51.346	33.31			0.43489	0.43713	57.916	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43489	0.43713	57.916	2	1	Median	NaN	NaN	NaN	0	0	Median	7580800	5243800	2337000	0	0	0	0	0	0	7580800	5243800	2337000	0	0	0	45267	4104	42611	274068;274069	367582;367583	367582			2	
SFVKPPSLANLDK	2	Unmodified	1414.782	0.78201531	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.988	57.453	3	0.0057007	47155	160511_QHF_FH_JSI9i_3	50.352	32.686			0.91123	0.74597	NaN	1	1	Median	0.91123	0.74597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61070000	29573000	31497000	61070000	29573000	31497000	0	0	0	0	0	0	0	0	0	45268	3643	42612	274070	367584	367584			1	
SFVKVYNYNHLMPTR	1	Acetyl (K);Oxidation (M)	1925.9458	0.94580295	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		66.956	57.351	3	0.0010486	31058	160513_QHF_FH_JSI11Kac_6	67.416	55.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8650500	8650500	0	0	0	0	0	0	0	8650500	8650500	0	0	0	0	45269	1953	42613	274071	367585;367586	367585	1970	1625	2	
SFVKVYNYNHLMPTR	1	Acetyl (K)	1909.9509	0.95088832	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.448	66.111	3	2.6616E-06	36013	160513_QHF_FH_JSI11Kac_6	104.26	86.154			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45270	1953	42613	274072	367587	367587	1970		1	
SFVLNLGK	1	Unmodified	876.5069	0.50690308	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	6	5	5	65.366	60.499	2	2.6195E-06	49451	160511_QHF_FH_JSI9i_3	142.64	86.126			1.012	1.0471	15.773	20	0	Median	1.2186	1.0588	12.918	4	0	Median	0.92355	1.0629	15.137	6	0	Median	0.983	0.9452	15.76	5	0	Median	1.0169	1.0534	22.334	5	0	Median	23762000000	10121000000	13640000000	5902900000	1867400000	4035500000	5827600000	2381600000	3446000000	5413300000	2439100000	2974200000	6618100000	3433300000	3184800000	45271	926	42614	274073;274074;274075;274076;274077;274078;274079;274080;274081;274082;274083;274084;274085;274086;274087;274088;274089;274090;274091;274092	367588;367589;367590;367591;367592;367593;367594;367595;367596;367597;367598;367599;367600;367601;367602;367603;367604;367605;367606;367607;367608;367609;367610;367611;367612;367613;367614;367615;367616;367617;367618;367619;367620;367621;367622;367623;367624;367625;367626;367627;367628;367629;367630;367631;367632;367633;367634	367609			47	
SFVLPSWMVEK	1	Unmodified	1321.674	0.67404476	4650	Q9H147	DNTTIP1	Deoxynucleotidyltransferase terminal-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	92.911	92.9	2	7.9747E-06	80522	160511_QHF_FH_JSI12i_3	109.42	104.81			0.95216	0.992	20.018	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9093	0.86107	NaN	1	0	Median	0.99704	1.1428	NaN	1	0	Median	102760000	53676000	49089000	0	0	0	0	0	0	30934000	18258000	12676000	71831000	35418000	36413000	45272	4650	42615	274093;274094;274095;274096	367635;367636;367637;367638;367639;367640;367641	367639			7	
SFVPNMIGGASQADLAVLVISAR	0	Unmodified	2315.2308	0.23075158	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS				2	0		1								1				101.9	101.83	2	4.3381E-08	89700	160511_QHF_FH_JSI9i_2	125.12	113.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32917000	0	32917000	32917000	0	32917000	0	0	0	0	0	0	0	0	0	45273	1069;3467	42616	274097	367642	367642			1	
SFVQFPNASEAHLAMGR	0	Unmodified	1860.8941	0.89410173	2098	P78563	ADARB1	Double-stranded RNA-specific editase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			70.412	68.937	3	3.2451E-06	56632	160511_QHF_FH_JSI9i_3	105.28	97.363			1.3552	1.3435	15.028	2	1	Median	1.8079	1.4942	NaN	1	1	Median	1.0158	1.2081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37772000	13954000	23818000	18784000	6917700	11866000	18988000	7036000	11952000	0	0	0	0	0	0	45274	2098	42617	274098;274099	367643;367644;367645	367645			3	
SFVQGLGVASDVVR	0	Unmodified	1432.7674	0.76742787	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.661	70.051	2	6.4425E-10	61330	160511_QHF_FH_JSI11i_2	108.37	89.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45275	1419	42618	274100	367646	367646			1	
SFVVSAASATER	0	Unmodified	1223.6146	0.61461563	4240	Q96S99	PLEKHF1	Pleckstrin homology domain-containing family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.5	6.5		3						3		2	2	2		48.586	38.213	2	0.00093835	33794	160511_QHF_FH_JSI9i_2	69.01	51.191			0.94391	1.0416	9.6428	3	0	Median	1.2978	1.0672	NaN	1	0	Median	0.92145	1.0416	NaN	1	0	Median	0.94391	0.89332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6721100	3690200	3030900	2305300	1093300	1212100	2101000	1377800	723190	2314800	1219100	1095700	0	0	0	45276	4240	42619	274101;274102;274103;274104;274105;274106	367647;367648;367649;367650;367651	367648			4	
SFWMTLLTDALPLLEQK	1	Unmodified	2005.0594	0.059435719	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			101.55	94.096	2;3	3.2894E-55	53499	160513_QHF_FH_JSI9Kac_6	231.06	215.31			1.1473	1.1373	20.537	4	1	Median	1.4855	1.2577	3.8466	2	0	Median	0.78962	0.92891	18.229	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	552050000	274780000	277270000	187550000	70788000	116760000	364500000	203990000	160510000	0	0	0	0	0	0	45277	4487	42620	274107;274108;274109;274110	367652;367653;367654;367655;367656;367657;367658	367655			7	
SFWSYAFSR	0	Unmodified	1149.5243	0.52434406	3590	Q8NBI5	SLC43A3	Solute carrier family 43 member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	77.519	69.415	2	5.9499E-17	38508	160513_QHF_FH_JSI10Kac_6	172.21	135.82			0.9968	0.95854	9.6224	3	0	Median	1.0442	0.88744	NaN	1	0	Median	0.80346	0.95854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9968	1.0745	NaN	1	0	Median	502120000	276420000	225700000	123350000	62818000	60527000	321270000	182700000	138560000	0	0	0	57503000	30893000	26610000	45278	3590	42621	274111;274112;274113	367659;367660;367661	367661			3	
SFYGSTLFLCR	0	Unmodified	1349.6438	0.64380726	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.52		2	4					2	4	3	4	3	2	78.057	73.186	2	1.4046E-105	38578	160513_QHF_FH_JSI11Kac_6	270.06	233.67			0.99394	1.0771	29.459	12	2	Median	1.5223	1.3057	16.86	3	0	Median	0.94587	1.075	11.188	4	1	Median	0.86492	0.83731	21.095	3	1	Plateau	1.1608	1.1997	6.0186	2	0	Median	3838700000	1990600000	1848100000	477720000	188320000	289400000	1953100000	1051500000	901580000	928470000	514250000	414210000	479380000	236500000	242890000	45279	1650	42622	274114;274115;274116;274117;274118;274119;274120;274121;274122;274123;274124;274125	367662;367663;367664;367665;367666;367667;367668;367669;367670;367671;367672;367673;367674;367675;367676;367677;367678;367679;367680;367681;367682	367669			21	
SFYKHILGK	2	Acetyl (K)	1133.6233	0.62332982	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	58.04	48.669	2;3	0.00096919	26439	160513_QHF_FH_JSI11Kac_6	72.643	43.17			0.51956	0.57067	69.916	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4698	1.6995	NaN	1	0	Median	0.47382	0.46185	NaN	1	0	Median	0.51956	0.57067	NaN	1	0	Median	36445000	21761000	14683000	0	0	0	13736000	6808800	6927600	14839000	10006000	4832900	7869500	4946800	2922800	45280	3290	42623	274126;274127;274128;274129	367683;367684;367685;367686;367687;367688	367684	2825		6	
SFYLALYK	1	Unmodified	1003.5379	0.53786886	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	2	2	73.979	69.946	2	0.00060564	59613	160511_QHF_FH_JSI10i_3	102.71	90.992			1.1929	1.2017	24.899	7	1	Median	1.5362	1.2499	NaN	1	0	Median	0.70189	0.82882	34.35	2	1	Median	1.1393	1.0628	23.216	2	0	Median	1.2054	1.2412	4.5696	2	0	Median	474080000	229420000	244670000	27021000	7654000	19367000	184860000	102740000	82119000	105880000	48919000	56958000	156320000	70102000	86222000	45281	4352	42624	274130;274131;274132;274133;274134;274135;274136	367689;367690;367691;367692;367693;367694	367689			6	
SFYPEEVSSMVLTK	1	Unmodified	1615.7804	0.78036033	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.97	8	8	10					7	3	9	10	10	7	83.26	80.133	2;3	8.3204E-30	73456	160511_QHF_FH_JSI10i_2	211.46	176.77			0.94759	1.0057	26.404	34	4	Median	1.211	0.99302	23.433	9	1	Median	0.84434	0.98528	6.3224	9	2	Median	1.0208	1.0466	41.807	10	1	Median	0.94759	1.0546	15.349	6	0	Median	17341000000	8668700000	8672400000	3654200000	1657800000	1996400000	4854200000	2702100000	2152200000	4823700000	2331500000	2492200000	4008900000	1977300000	2031600000	45282	985	42625	274137;274138;274139;274140;274141;274142;274143;274144;274145;274146;274147;274148;274149;274150;274151;274152;274153;274154;274155;274156;274157;274158;274159;274160;274161;274162;274163;274164;274165;274166;274167;274168;274169;274170;274171;274172	367695;367696;367697;367698;367699;367700;367701;367702;367703;367704;367705;367706;367707;367708;367709;367710;367711;367712;367713;367714;367715;367716;367717;367718;367719;367720;367721;367722;367723;367724;367725;367726;367727;367728;367729;367730;367731;367732;367733;367734;367735;367736;367737;367738;367739;367740;367741;367742;367743;367744;367745;367746;367747;367748;367749;367750;367751;367752;367753;367754;367755;367756;367757;367758;367759;367760;367761;367762;367763;367764;367765;367766;367767;367768;367769;367770;367771;367772;367773;367774;367775;367776;367777;367778;367779;367780;367781;367782;367783;367784;367785;367786;367787;367788;367789;367790;367791;367792;367793;367794;367795;367796;367797;367798;367799;367800;367801;367802;367803;367804;367805;367806;367807	367791			113	
SFYPEEVSSMVLTK	1	Oxidation (M)	1631.7753	0.77527495	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.23	3	8					4	17		6	11	7	8	74.328	66.931	2;3	6.6325E-07	35270	160513_QHF_FH_JSI11Kac_5	107.09	70.395			0.9864	1.019	19.66	31	3	Median	1.1673	0.9764	12.691	6	0	Median	0.87311	1.019	21.356	11	2	Median	1.0226	1.026	10.08	6	0	Median	0.95638	1.0483	26.78	8	1	Median	669980000	338420000	331560000	116490000	52899000	63588000	176010000	87232000	88779000	205300000	115060000	90233000	172180000	83227000	88957000	45283	985	42625	274173;274174;274175;274176;274177;274178;274179;274180;274181;274182;274183;274184;274185;274186;274187;274188;274189;274190;274191;274192;274193;274194;274195;274196;274197;274198;274199;274200;274201;274202;274203;274204	367808;367809;367810;367811;367812;367813;367814;367815;367816;367817;367818;367819;367820;367821;367822;367823;367824;367825;367826;367827;367828;367829;367830;367831;367832;367833;367834;367835;367836;367837;367838;367839;367840;367841;367842;367843;367844;367845;367846;367847	367837		567	38	
SFYPYIHVVNK	1	Unmodified	1365.7081	0.70812208	5287	Q9UGU0	TCF20	Transcription factor 20	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			57.936	56.392	3	0.00018925	46293	160511_QHF_FH_JSI9i_3	79.07	65.885			0.83088	0.80981	6.0863	2	2	Median	1.0122	0.84542	NaN	1	1	Median	0.68201	0.7757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67722000	42249000	25473000	33516000	21153000	12363000	34206000	21096000	13110000	0	0	0	0	0	0	45284	5287	42626	274205;274206	367848;367849	367849			2	
SFYQFQHYR	0	Unmodified	1274.5833	0.58325592	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			47.34	38.529	2;3	6.189E-06	21173	160513_QHF_FH_JSI10Kac_6	111.61	98.515			0.85662	1.0271	26.071	3	0	Median	1.4592	1.253	NaN	1	0	Median	0.7307	0.87609	22.494	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59855000	30000000	29855000	12549000	4790500	7758700	47306000	25209000	22097000	0	0	0	0	0	0	45285	1532	42627	274207;274208;274209	367850;367851;367852;367853	367853			4	
SFYSSHYAR	0	Unmodified	1116.4989	0.49885759	3644	Q8NEY8	PPHLN1	Periphilin-1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				18.018	16.857	3	0.0039346	13512	160511_QHF_FH_JSI9i_3	63.216	56.328			1.6089	1.2924	NaN	1	0	Median	1.6089	1.2924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24736000	10113000	14623000	24736000	10113000	14623000	0	0	0	0	0	0	0	0	0	45286	3644	42628	274210	367854;367855	367854			2	
SFYSTEAVQAHMNDK	1	Unmodified	1726.7621	0.7620845	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	41.552	40.941	2;3	2.8585E-55	35963	160511_QHF_FH_JSI11i_3	186.91	144.16			1.1512	1.1455	7.2883	7	0	Median	1.2008	1.0375	NaN	1	0	Median	0.93261	1.1533	NaN	1	0	Median	1.1785	1.1495	0.48775	2	0	Median	1.042	1.0675	10.885	3	0	Median	887430000	435430000	452000000	97275000	46514000	50762000	113310000	68003000	45308000	312450000	131820000	180630000	364390000	189090000	175290000	45287	3947	42629	274211;274212;274213;274214;274215;274216;274217;274218	367856;367857;367858;367859;367860;367861;367862;367863;367864;367865;367866;367867;367868	367858			12	
SFYTAIAQAFLSNEK	1	Unmodified	1688.841	0.84098675	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.691	85.971	3	2.3962E-07	49086	160513_QHF_FH_JSI10Kac_6	113.43	95.068			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45288	641	42630	274219	367869	367869			1	
SGAAAAAVTTETAQHAQGAK	1	Unmodified	1839.9075	0.90750318	1217	P22830	FECH	Ferrochelatase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2								2	3	2	23.932	23.325	3	5.3117E-11	19682	160511_QHF_FH_JSI11i_3	126.4	107.57			0.88762	0.94675	25.872	5	2	Median	NaN	NaN	NaN	0	0	Median	0.7565	0.9202	35.725	2	2	Median	1.0701	0.98433	NaN	1	0	Median	0.702	0.76803	29.587	2	0	Median	146140000	73543000	72596000	0	0	0	39415000	21107000	18308000	47033000	22078000	24955000	59691000	30358000	29332000	45289	1217	42631	274220;274221;274222;274223;274224;274225;274226	367870;367871;367872;367873;367874;367875;367876;367877;367878;367879	367870			10	
SGAALSKK	2	Unmodified	760.4443	0.44430282	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				4.6496	4.1503	2	0.0073966	2107	160511_QHF_FH_JSI9i_3	60.019	29.834			0.82006	0.68494	NaN	1	0	Median	0.82006	0.68494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101600000	45769000	55835000	101600000	45769000	55835000	0	0	0	0	0	0	0	0	0	45290	939	42632	274227	367880;367881	367880			2	
SGAAQGLAEVMAGLGVEK	1	Unmodified	1686.8611	0.86107026	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	2	2	2							1	2	2	1	94.072	93.927	3	6.63E-06	83517	160511_QHF_FH_JSI11i_3	86.727	76.927			0.87779	1.0575	25.492	6	1	Median	1.5041	1.327	NaN	1	0	Median	0.87779	1.0575	4.3548	2	0	Median	0.89249	0.85224	39.702	2	1	Median	0.84035	0.84205	NaN	1	0	Median	335480000	169060000	166420000	30531000	15314000	15218000	87853000	43399000	44454000	92757000	42865000	49892000	124340000	67483000	56852000	45291	3860	42633	274228;274229;274230;274231;274232;274233	367882;367883;367884;367885;367886;367887;367888;367889;367890	367882			8	
SGAAWTCQQLR	0	Unmodified	1276.5983	0.59825406	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	33.005	32.293	2	0.0074668	27895	160511_QHF_FH_JSI11i_3	51.927	47.314			1.0222	1.0751	12.666	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0222	1.0751	12.666	2	2	Median	27141000	12105000	15036000	0	0	0	0	0	0	0	0	0	27141000	12105000	15036000	45292	4871	42634	274234;274235;274236	367891;367892;367893;367894	367891			4	
SGAEAQTPEDSPNR	0	Unmodified	1457.6383	0.63826419	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.9935	9.613	2	1.2525E-06	7267	160511_QHF_FH_JSI11i_1	134.49	109.65			1.082	1.0756	29.196	4	0	Median	1.4147	1.1771	NaN	1	0	Median	0.82761	0.98293	NaN	1	0	Median	1.7265	1.6935	NaN	1	0	Median	0.80274	0.8652	NaN	1	0	Median	171290000	77156000	94129000	45178000	18545000	26633000	45185000	24651000	20534000	44133000	15951000	28182000	36790000	18009000	18781000	45293	340	42635	274237;274238;274239;274240	367895;367896;367897;367898;367899;367900;367901	367895			7	
SGAEDQTPK	1	Unmodified	931.42469	0.42468959	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	5.2826	4.8628	2	0.00039324	2808	160511_QHF_FH_JSI12i_1	81.547	59.056			1.2137	0.84705	22.855	3	0	Plateau	1.3041	1.0841	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96613	0.99748	31.599	2	0	Median	440910000	233810000	207100000	150540000	74737000	75803000	0	0	0	0	0	0	290370000	159070000	131300000	45294	340	42636	274241;274242;274243	367902;367903;367904	367902			3	
SGAEEQGPIDGPSK	1	Unmodified	1370.6314	0.6313879	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	19.486	17.14	2	7.5389E-40	14757	160511_QHF_FH_JSI12i_1	199.12	159.5			0.75808	0.84115	20.343	4	1	Median	1.1183	0.91844	NaN	1	0	Median	0.70959	0.83069	NaN	1	0	Median	0.60162	0.58188	NaN	1	1	Median	0.80988	0.85173	NaN	1	0	Median	326170000	175920000	150250000	108370000	52250000	56116000	122260000	67555000	54709000	1540100	930280	609810	94001000	55189000	38812000	45295	340	42637	274244;274245;274246;274247;274248	367905;367906;367907;367908;367909;367910;367911;367912	367906			8	
SGAEKGYLVK	2	Acetyl (K)	1092.5815	0.58152458	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.606	31.562	2	0.0053371	19136	160513_QHF_FH_JSI11Kac_4	75.387	53.924			0.59047	0.58826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59047	0.58826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3408000	1999100	1408900	0	0	0	0	0	0	3408000	1999100	1408900	0	0	0	45296	4202	42638	274249	367913	367913	3076		1	
SGAEVEAGDAAER	0	Unmodified	1260.5582	0.55822296	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	3	2	3	14.537	11.852	2	4.0362E-05	9985	160511_QHF_FH_JSI11i_1	141.44	122.66			0.95067	1.0768	17.638	9	5	Median	1.6636	1.3797	NaN	1	1	Median	0.95067	1.0812	4.4297	3	2	Median	1.1221	1.0994	9.0172	2	0	Median	0.77649	0.80659	7.6598	3	2	Plateau	1019000000	499610000	519430000	160890000	57735000	103150000	380390000	191310000	189080000	176060000	83266000	92790000	301710000	167300000	134410000	45297	3459	42639	274250;274251;274252;274253;274254;274255;274256;274257;274258	367914;367915;367916;367917;367918;367919;367920;367921;367922	367914			9	
SGAGSSPETK	1	Unmodified	919.42469	0.42468959	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	3.7422	3.4293	2	3.3155E-05	1421	160511_QHF_FH_JSI11i_1	96.143	49.061			1.0173	1.0662	24.667	4	0	Median	1.3923	1.1343	NaN	1	0	Median	1.0152	1.1817	NaN	1	0	Median	1.0194	1.0022	NaN	1	0	Median	0.65861	0.68756	NaN	1	0	Median	176130000	93043000	83088000	42966000	18029000	24937000	50143000	29364000	20779000	44802000	22548000	22253000	38220000	23102000	15118000	45298	5474	42640	274259;274260;274261;274262	367923;367924;367925;367926;367927;367928;367929;367930;367931;367932	367925			10	
SGAGVPAVILR	0	Unmodified	1038.6186	0.61857879	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	52.342	51.516	2	9.4414E-05	45431	160511_QHF_FH_JSI10i_2	88.136	63.193			1.042	1.0512	15.566	5	0	Median	1.2472	1.0512	NaN	1	0	Median	0.77939	0.94186	NaN	1	0	Median	1.042	1.0677	NaN	1	0	Median	0.86493	0.93312	27.986	2	0	Median	487350000	249950000	237400000	93528000	43688000	49839000	90702000	49576000	41125000	184120000	90846000	93270000	119010000	65844000	53164000	45299	3840	42641	274263;274264;274265;274266;274267	367933;367934;367935	367935			3	
SGAHSFISGLPQGYDTEVDEAGSQLSGGQR	0	Unmodified	3049.4013	0.40133497	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	74.484	73.831	3	1.5111E-38	65626	160511_QHF_FH_JSI10i_2	147.25	144.42			1.1369	1.1422	17.802	5	2	Median	1.5377	1.3369	NaN	1	1	Median	0.97129	1.1694	19.015	2	0	Median	1.2272	1.1422	NaN	1	0	Median	0.84157	0.88472	NaN	1	1	Median	189590000	90686000	98901000	31948000	8870400	23077000	76461000	38671000	37790000	67476000	35561000	31915000	13702000	7583500	6118600	45300	2211	42642	274268;274269;274270;274271;274272;274273	367936;367937;367938;367939;367940;367941;367942;367943;367944;367945;367946	367943			11	
SGAHVDFYDK	1	Unmodified	1137.5091	0.50908792	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.3	3.9		9						1		2	2	2	4	25.77	23.944	2;3	0.00012835	19769	160511_QHF_FH_JSI11i_2	98.048	50.967			1.0304	1.0637	32.911	9	3	Median	1.3353	1.1416	26.484	2	0	Median	0.83012	1.0031	8.2935	2	0	Median	1.1037	1.1083	9.7393	2	1	Median	1.0304	1.1495	56.388	3	2	Median	608660000	307280000	301380000	84883000	35554000	49329000	155130000	80547000	74581000	227570000	107400000	120170000	141080000	83779000	57300000	45301	1433	42643	274274;274275;274276;274277;274278;274279;274280;274281;274282;274283	367947;367948;367949;367950;367951;367952;367953;367954;367955;367956;367957;367958;367959;367960	367955			14	
SGAIFTKAYQR	1	Acetyl (K)	1282.667	0.66698555	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.239	46.512	2	0.011373	25177	160513_QHF_FH_JSI11Kac_6	74.944	39.433			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45302	1778	42644	274284	367961	367961	1794		1	
SGALDVLQMK	1	Acetyl (Protein N-term)	1102.5692	0.56924534	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	5	4	2	3	4	2	2				3	5	3	6	83.047	78.433	2	3.062E-44	74425	160511_QHF_FH_JSI10i_1	124.98	100.06			0.92027	1.0071	100.1	10	1	Median	1.2044	0.27556	152.83	3	1	Median	0.83597	0.97798	10.265	4	0	Median	1.0516	1.0308	NaN	1	0	Median	1	1.0805	7.196	2	0	Median	8202200000	4087900000	4114300000	2316500000	1068900000	1247700000	2214000000	1179100000	1034900000	1925700000	958060000	967650000	1746000000	881900000	864060000	45303	917	42645	274285;274286;274287;274288;274289;274290;274291;274292;274293;274294;274295;274296;274297;274298;274299;274300;274301	367962;367963;367964;367965;367966;367967;367968;367969;367970;367971;367972;367973;367974;367975;367976;367977;367978;367979;367980;367981;367982;367983;367984;367985;367986;367987	367972			26	
SGALDVLQMK	1	Acetyl (Protein N-term);Oxidation (M)	1118.5642	0.56415996	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.47	4.75	4			4	4	5				2	6	5	4	68.689	62.312	2	2.7379E-25	29071	160513_QHF_FH_JSI12Kac_2	84.568	37.574			0.87668	0.97573	38.974	14	1	Median	1.3558	1.0916	NaN	1	0	Median	0.85961	0.98672	20.696	5	0	Median	0.91896	0.89996	18.848	4	0	Median	0.79178	0.87513	62.322	4	1	Median	1193500000	575440000	618040000	275590000	94945000	180650000	355980000	166030000	189940000	312290000	141880000	170400000	249620000	172580000	77042000	45304	917	42645	274302;274303;274304;274305;274306;274307;274308;274309;274310;274311;274312;274313;274314;274315;274316;274317;274318	367988;367989;367990;367991;367992;367993;367994;367995;367996;367997;367998;367999;368000;368001;368002;368003;368004	368004		499	17	
SGALDVLQMKEEDVLK	2	Acetyl (Protein N-term)	1815.9288	0.92881548	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.656	6	4	1							4	2	3	2	93.098	92.65	2	1.1104E-30	79883	160511_QHF_FH_JSI12i_2	114.82	90.525			0.89444	0.88631	142.81	10	4	Median	0.94825	0.81135	210.91	3	2	Median	0.73292	0.88509	8.8526	2	0	Median	0.8542	0.83368	206.68	3	2	Median	0.97466	1.0615	0.88142	2	0	Median	1454100000	794900000	659240000	281420000	142010000	139410000	414220000	244120000	170090000	375900000	205580000	170320000	382610000	203190000	179420000	45305	917	42646	274319;274320;274321;274322;274323;274324;274325;274326;274327;274328;274329	368005;368006;368007;368008;368009;368010;368011;368012;368013;368014;368015;368016;368017;368018;368019;368020;368021;368022;368023;368024	368010			20	
SGALPVAWLER	0	Unmodified	1197.6506	0.6506072	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	77.404	76.808	2	7.3837E-05	68303	160511_QHF_FH_JSI10i_2	91.549	79.022			1.5475	1.5535	18.911	5	2	Median	1.8411	1.5535	NaN	1	0	Median	1.1141	1.3525	NaN	1	0	Median	1.7924	1.7026	NaN	1	0	Median	1.232	1.2978	28.952	2	2	Median	318490000	129240000	189250000	50428000	20241000	30187000	75825000	37847000	37979000	83552000	29149000	54403000	108690000	42007000	66682000	45306	319	42647	274330;274331;274332;274333;274334;274335	368025;368026;368027;368028;368029;368030	368029			6	
SGALQIESSEESDQGK	1	Unmodified	1663.7537	0.75368788	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	28.628	28.188	2	1.1535E-07	24625	160511_QHF_FH_JSI9i_1	98.942	83.052			0.63852	0.70245	10.672	2	0	Median	NaN	NaN	NaN	0	0	Median	0.57473	0.65139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7094	0.75751	NaN	1	0	Median	45664000	24885000	20779000	0	0	0	22621000	14508000	8113600	0	0	0	23043000	10377000	12665000	45307	971	42648	274336;274337;274338;274339	368031;368032;368033;368034	368034			3	
SGAMNEAIR	0	Unmodified	947.44946	0.44946455	5821				yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	15.803	15.568	2	0.042023	13110	160511_QHF_FH_JSI10i_1	37.558	21.926	+		0.79281	0.78613	32.274	5	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2781	1.4935	0	2	0	Median	0.79281	0.78613	0	2	0	Median	1.0931	1.1707	NaN	1	0	Median	497740000	253640000	244100000	0	0	0	182530000	78739000	103790000	223260000	132040000	91219000	91953000	42865000	49088000	45308	5821	42649	274340;274341;274342;274343;274344	368035;368036	368036			2	
SGANINR	0	Unmodified	730.3722	0.37220051	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	4.8075	4.4785	2	0.0035087	2452	160511_QHF_FH_JSI11i_2	92.677	43.318			0.84285	0.81813	21.711	5	1	Median	0.905	0.77853	NaN	1	0	Median	1.017	1.1908	NaN	1	0	Median	0.84285	0.81813	NaN	1	0	Median	0.66886	0.73686	16.12	2	1	Median	1095800000	594740000	501080000	110280000	57344000	52933000	350360000	170810000	179550000	124690000	74911000	49783000	510480000	291670000	218820000	45309	2147	42650	274345;274346;274347;274348;274349;274350	368037;368038;368039	368039			3	
SGAPAAESK	1	Unmodified	816.39775	0.39774656	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	5.71	5				3	2				1	3	2	4	5.0196	1.2468	2	2.756E-05	2539	160511_QHF_FH_JSI10i_1	103.55	49.389			0.96222	1.0137	16.406	10	1	Median	1.4056	1.1628	NaN	1	0	Median	1.1185	1.3121	16.782	3	0	Plateau	1.0732	1.0422	3.443	2	0	Median	0.88128	0.92996	17.117	4	1	Median	3869300000	1904100000	1965200000	558910000	264110000	294810000	1006200000	459230000	546980000	1071700000	502150000	569540000	1232500000	678610000	553890000	45310	4971	42651	274351;274352;274353;274354;274355;274356;274357;274358;274359;274360	368040;368041;368042;368043;368044;368045	368041			6	
SGAPPPSGSAVSTAPQPK	1	Unmodified	1634.8264	0.82639932	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.757	23.419	2	0.00065348	20402	160511_QHF_FH_JSI10i_1	60.628	37.711			1.1457	1.1228	14.045	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2767	1.24	NaN	1	1	Median	1.0282	1.0166	NaN	1	1	Median	33211000	12713000	20498000	0	0	0	0	0	0	17929000	5438800	12491000	15281000	7274500	8006900	45311	4242	42652	274361;274362;274363;274364	368046;368047;368048;368049	368048			4	
SGAPVLSLLSVR	0	Unmodified	1197.7081	0.70812208	4377	Q9BRP4	PAAF1	Proteasomal ATPase-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			85.99	84.792	2	0.0014156	70911	160511_QHF_FH_JSI10i_3	64.439	52.392			1.2516	1.2107	28.207	2	0	Median	1.7672	1.4779	NaN	1	0	Median	0.88639	0.99176	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40624000	19369000	21255000	19358000	7754100	11604000	21266000	11615000	9651300	0	0	0	0	0	0	45312	4377	42653	274365;274366	368050;368051	368050			2	
SGAQASSTPLSPTR	0	Unmodified	1358.679	0.6790068	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.48	4	4	5		1	4	3			4	6	6	5	22.319	18.282	2	1.2894E-116	16356	160511_QHF_FH_JSI9i_1	270.02	242.25			0.8249	0.95132	33.378	20	3	Median	1.4437	1.1669	2.1368	3	0	Plateau	0.79924	0.95132	8.7897	6	2	Median	1.0717	1.0496	58.955	6	1	Median	0.77266	0.81792	3.129	5	0	Median	7727300000	3864100000	3863200000	1672900000	671440000	1001400000	2156600000	1219800000	936790000	2102600000	997420000	1105100000	1795300000	975440000	819870000	45313	791	42654	274367;274368;274369;274370;274371;274372;274373;274374;274375;274376;274377;274378;274379;274380;274381;274382;274383;274384;274385;274386;274387	368052;368053;368054;368055;368056;368057;368058;368059;368060;368061;368062;368063;368064;368065;368066;368067;368068;368069;368070;368071;368072;368073;368074;368075;368076;368077;368078;368079;368080;368081;368082;368083;368084;368085;368086;368087;368088;368089;368090	368076			39	
SGASEANLIVAK	1	Unmodified	1158.6245	0.62445203	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	36.14	35.227	2	0.0010281	30971	160511_QHF_FH_JSI9i_1	77.062	56.759			1.4024	1.319	28.31	2	2	Median	1.3067	1.0797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.505	1.6114	NaN	1	1	Median	260660000	113380000	147280000	153590000	64036000	89552000	0	0	0	0	0	0	107070000	49347000	57725000	45314	1576	42655	274388;274389	368091;368092	368092			2	
SGASGPENFQVGSMPPAQQQITSGQMHR	0	Unmodified	2926.345	0.34502284	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2								4	3	1	58.028	57.565	3	6.0818E-42	50816	160511_QHF_FH_JSI10i_2	171.29	164.26			1.1826	1.1476	5.5154	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87071	1.0643	NaN	1	0	Median	1.2175	1.1662	2.2672	2	0	Median	NaN	NaN	NaN	0	0	Median	166070000	88378000	77688000	0	0	0	62270000	31484000	30786000	103800000	56894000	46902000	0	0	0	45315	5616	42656	274390;274391;274392;274393;274394;274395;274396;274397	368093;368094;368095;368096;368097;368098;368099;368100;368101;368102;368103;368104;368105;368106	368101			14	
SGASGPENFQVGSMPPAQQQITSGQMHR	0	Oxidation (M)	2942.3399	0.33993746	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			49.521	48.566	3	1.3068E-16	42832	160511_QHF_FH_JSI10i_2	115.63	108.91			0.41894	0.51835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41894	0.51835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14379000	12213000	2166600	0	0	0	14379000	12213000	2166600	0	0	0	0	0	0	45316	5616	42656	274398	368107	368107		2714	1	
SGASSSEQNNNSYETK	1	Acetyl (Protein N-term)	1743.7184	0.71836501	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			13.039	12.801	2	8.5728E-05	10467	160511_QHF_FH_JSI10i_1	71.806	62.852			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45317	449	42657	274399	368108	368108			1	
SGASVVAIRK	1	Unmodified	986.58728	0.58727866	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			22.986	15.959	3	0.014126	9351	160513_QHF_FH_JSI10Kac_6	33.723	17.071			0.60062	0.71553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60062	0.71553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8263800	5702300	2561500	0	0	0	8263800	5702300	2561500	0	0	0	0	0	0	45318	2927	42658	274400	368109	368109			1	
SGATAGAAGGR	0	Unmodified	874.42569	0.42569264	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.32	0.546	18	6	1							12	6	4	3	1.9077	1.5268	2	2.031E-24	984	160511_QHF_FH_JSI10i_1	182.98	126.07			1.1866	1.001	21.504	25	2	Median	1.2373	1.007	10.005	12	0	Median	0.85	1.0125	33.916	6	1	Median	0.97186	0.91793	22.153	4	1	Median	0.74123	0.84279	30.598	3	0	Median	3729700000	1950100000	1779500000	599000000	280060000	318940000	1425600000	783470000	642160000	1005800000	496450000	509320000	699250000	390140000	309120000	45319	1722	42659	274401;274402;274403;274404;274405;274406;274407;274408;274409;274410;274411;274412;274413;274414;274415;274416;274417;274418;274419;274420;274421;274422;274423;274424;274425	368110;368111;368112;368113;368114;368115;368116;368117;368118;368119;368120;368121;368122;368123;368124;368125;368126;368127;368128;368129;368130;368131;368132;368133;368134;368135;368136;368137;368138;368139;368140;368141;368142;368143	368123			32	
SGAVEETFR	0	Unmodified	994.47197	0.47197413	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	21.214	20.614	2	3.5675E-06	18103	160511_QHF_FH_JSI12i_1	122.44	90.481			1.0333	1.0463	29.122	7	1	Median	1.5106	1.2821	NaN	1	0	Median	0.95902	1.1538	58.218	2	0	Median	1.0923	1.0902	30.83	2	0	Median	0.91254	0.96562	11.344	2	1	Median	794780000	400380000	394390000	95329000	37459000	57870000	185530000	104040000	81492000	281580000	135890000	145690000	232330000	122990000	109340000	45320	3175	42660	274426;274427;274428;274429;274430;274431;274432	368144;368145;368146;368147;368148;368149;368150;368151;368152	368146			9	
SGAVLYIR	0	Unmodified	877.50215	0.50215205	4723	Q9H4K7	MTG2	Mitochondrial ribosome-associated GTPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	46.163	36.892	2	0.0046224	20191	160513_QHF_FH_JSI11Kac_6	81.119	43.96			1.0847	1.1481	20.63	4	0	Median	1.5455	1.3169	NaN	1	0	Median	1.0361	1.2078	NaN	1	0	Median	1.1356	1.0913	NaN	1	0	Median	0.71101	0.81944	NaN	1	0	Median	45549000	21721000	23827000	8050700	3048500	5002300	16280000	9104700	7175500	18707000	8425300	10282000	2511000	1143000	1368000	45321	4723	42661	274433;274434;274435;274436	368153;368154;368155	368154			3	
SGAVTFSSQGR	0	Unmodified	1095.5309	0.530886	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.2		3					1			1	1	2		21.541	17.245	2	0.00013306	14109	160511_QHF_FH_JSI11i_2	90.108	75.439			1.0549	0.98141	13.049	2	1	Median	1.0318	0.89491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0785	1.0763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14449000	7790200	6658900	12121000	6706300	5414400	0	0	0	2328400	1083900	1244500	0	0	0	45322	560	42662	274437;274438;274439;274440	368156;368157;368158;368159	368158			4	
SGAWDESGVFIYTTSNHIK	1	Unmodified	2110.996	0.99598384	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.88		11	2						4	3	4	6	4	74.563	71.931	2;3	1.5805E-71	36812	160513_QHF_FH_JSI9Kac_6	214.28	205.23			0.9113	0.99977	18.122	15	7	Median	1.3515	1.1512	0.82719	2	0	Median	0.80119	0.96702	6.2638	3	2	Plateau	1.1653	1.1485	11.812	6	4	Median	0.70599	0.7537	8.4853	4	1	Median	1920400000	991610000	928750000	289280000	126840000	162440000	636740000	350180000	286560000	654820000	321730000	333080000	339520000	192850000	146670000	45323	1805	42663	274441;274442;274443;274444;274445;274446;274447;274448;274449;274450;274451;274452;274453;274454;274455;274456;274457	368160;368161;368162;368163;368164;368165;368166;368167;368168;368169;368170;368171;368172;368173;368174;368175;368176;368177;368178;368179;368180;368181;368182;368183;368184;368185	368178			26	
SGAYLIPLLER	0	Unmodified	1230.6972	0.69722304	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	3.93	2	4	3					1		2	3	3	2	86.173	84.677	2	2.7697E-09	76302	160511_QHF_FH_JSI10i_2	128.03	120.55			1.0136	1.0827	26.515	10	5	Median	1.5235	1.347	25.29	2	1	Median	0.69408	0.83267	25.659	3	1	Median	1.1061	1.079	15.552	3	2	Plateau	0.77259	0.82108	11.267	2	1	Median	805190000	374800000	430390000	101030000	40986000	60046000	174030000	100740000	73293000	336830000	135910000	200920000	193300000	97170000	96127000	45324	1271	42664	274458;274459;274460;274461;274462;274463;274464;274465;274466;274467	368186;368187;368188;368189;368190;368191;368192;368193;368194;368195;368196;368197;368198	368197			12	
SGDAAIVDMVPGK	1	Oxidation (M)	1274.6177	0.61765209	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.7	16				6	6				4	8	8	8	44.02	39.69	2;3	3.7027E-12	22123	160513_QHF_FH_JSI11Kac_3	122.7	96.761			0.88788	0.95434	18.487	28	0	Median	1.4439	1.1795	19.578	4	0	Median	0.80344	0.92976	11.134	8	0	Median	1.0428	1.0107	6.3815	8	0	Median	0.75394	0.79002	9.8582	8	0	Median	2362100000	1180300000	1181800000	390770000	127450000	263330000	667160000	373580000	293590000	713840000	341810000	372030000	590340000	337500000	252830000	45325	2072	42665	274468;274469;274470;274471;274472;274473;274474;274475;274476;274477;274478;274479;274480;274481;274482;274483;274484;274485;274486;274487;274488;274489;274490;274491;274492;274493;274494;274495	368199;368200;368201;368202;368203;368204;368205;368206;368207;368208;368209;368210;368211;368212;368213;368214;368215;368216;368217;368218;368219;368220;368221;368222;368223;368224	368209		1731	23	
SGDAAIVDMVPGK	1	Unmodified	1258.6227	0.62273747	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.65	5.96	9	3			3	6	5			4	8	5	9	60.383	54.428	2;3	1.298E-30	51125	160511_QHF_FH_JSI11i_1	188.61	167.74			0.79595	0.88208	54.799	26	7	Median	0.98158	0.81243	95.999	4	0	Median	0.77878	0.9062	53.66	8	2	Median	1.1105	1.0953	37.589	5	1	Median	0.7362	0.80723	30.46	9	4	Median	30821000000	15557000000	15264000000	6699100000	2757200000	3941900000	6525300000	3345600000	3179700000	8045900000	3740300000	4305600000	9551000000	5713800000	3837200000	45326	2072	42665	274496;274497;274498;274499;274500;274501;274502;274503;274504;274505;274506;274507;274508;274509;274510;274511;274512;274513;274514;274515;274516;274517;274518;274519;274520;274521	368225;368226;368227;368228;368229;368230;368231;368232;368233;368234;368235;368236;368237;368238;368239;368240;368241;368242;368243;368244;368245;368246;368247;368248;368249;368250;368251;368252;368253;368254;368255;368256;368257;368258;368259;368260;368261;368262;368263;368264;368265;368266;368267;368268;368269;368270;368271;368272;368273;368274	368231			48	
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	Oxidation (M)	3010.3875	0.38746451	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	1.94	0.705	5	9	4								4	9	5	87.074	86.655	3	1.0985E-21	76792	160511_QHF_FH_JSI12i_3	126.46	120.93			1.0112	1.0823	17.739	15	3	Median	NaN	NaN	NaN	0	0	Median	1.0215	1.205	23.317	4	1	Median	1.0057	1.0078	18.092	6	2	Median	1.268	1.0823	12.638	5	0	Linear	912690000	476720000	435970000	0	0	0	189110000	93874000	95237000	362230000	205990000	156240000	361350000	176850000	184500000	45327	2072	42666	274522;274523;274524;274525;274526;274527;274528;274529;274530;274531;274532;274533;274534;274535;274536;274537;274538;274539	368275;368276;368277;368278;368279;368280;368281;368282;368283;368284;368285;368286;368287;368288;368289;368290;368291;368292;368293;368294;368295;368296;368297;368298;368299;368300;368301;368302;368303;368304;368305;368306;368307;368308;368309;368310;368311;368312;368313;368314;368315;368316;368317;368318;368319	368317		1731;1735	43	
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	Unmodified	2994.3925	0.39254989	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.806	8	8	7							5	5	7	6	96.58	96.359	3;4	2.2594E-70	87170	160511_QHF_FH_JSI10i_1	223.12	214.16			0.95512	1.034	10.913	22	1	Median	1.3885	1.1678	5.6411	4	0	Median	0.89829	1.0666	4.5087	5	0	Median	0.96344	0.96563	11.062	7	1	Median	0.95512	1.0006	10.038	6	0	Median	5603100000	2855400000	2747800000	521510000	216350000	305160000	1325100000	703650000	621490000	2003500000	1025600000	977870000	1753000000	909770000	843240000	45328	2072	42666	274540;274541;274542;274543;274544;274545;274546;274547;274548;274549;274550;274551;274552;274553;274554;274555;274556;274557;274558;274559;274560;274561;274562	368320;368321;368322;368323;368324;368325;368326;368327;368328;368329;368330;368331;368332;368333;368334;368335;368336;368337;368338;368339;368340;368341;368342;368343;368344;368345;368346;368347;368348;368349;368350;368351;368352;368353;368354;368355;368356;368357;368358;368359;368360;368361;368362;368363;368364;368365;368366;368367;368368;368369;368370;368371;368372;368373;368374;368375;368376;368377;368378;368379;368380;368381;368382;368383;368384;368385;368386;368387;368388;368389;368390;368391;368392;368393;368394;368395;368396;368397;368398;368399;368400	368357			81	
SGDAAIVDMVPGKPMCVESFSDYPPLGR	1	2 Oxidation (M)	3026.3824	0.38237913	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	2	1		By MS/MS			2	0		1									1			97.885	97.75	3	3.4587E-05	86552	160511_QHF_FH_JSI10i_2	47.018	40.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45329	2072	42666	274563	368401	368401		1731;1735	1	
SGDAAIVEMVPGKPMCVESFSQYPPLGR	1	Unmodified	3021.4398	0.43983443	2231	Q05639	EEF1A2	Elongation factor 1-alpha 2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			100.94	100.87	3	5.4262E-06	89353	160511_QHF_FH_JSI10i_2	53.475	43.146			0.34829	0.42985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34829	0.42985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59223000	51296000	7926500	0	0	0	59223000	51296000	7926500	0	0	0	0	0	0	45330	2231	42667	274564	368402	368402			1	
SGDAPLTVNELGTAYVSATTGAVATALGLNALTK	1	Unmodified	3246.6984	0.69835184	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0		By matching	By MS/MS		1.5	0.5	1	1									1	1		103.04	102.97	3	4.0422E-46	90774	160511_QHF_FH_JSI11i_2	145.86	140.76			0.99862	1.0166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99862	1.0166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	173850000	81105000	92745000	0	0	0	48119000	27458000	20662000	125730000	53647000	72084000	0	0	0	45331	4806	42668	274565;274566	368403	368403			1	
SGDETPGSEVPGDK	1	Unmodified	1373.5947	0.59466805	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	20.022	17.324	2	0.00011034	14773	160511_QHF_FH_JSI11i_1	132.5	99.273			0.94343	0.95813	15.404	6	0	Median	1.2174	1.0017	NaN	1	0	Median	0.76661	0.91648	NaN	1	0	Median	1.1658	1.1311	2.7766	2	0	Median	0.75736	0.80733	1.4059	2	0	Median	378270000	204870000	173400000	84769000	41815000	42954000	77353000	53757000	23596000	90187000	38486000	51701000	125960000	70816000	55146000	45332	2785	42669	274567;274568;274569;274570;274571;274572	368404;368405;368406;368407;368408;368409;368410	368404			7	
SGDGEGTPVEHVR	0	Unmodified	1338.6164	0.61640654	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	1	2	13.249	11.316	2;3	9.8251E-07	8978	160511_QHF_FH_JSI11i_2	127.87	101.43			0.76515	0.94604	25.474	5	1	Median	1.5334	1.3145	NaN	1	0	Median	0.76515	0.94604	NaN	1	0	Median	1.0098	1.0045	NaN	1	0	Median	0.66226	0.72591	10.709	2	1	Median	104950000	56033000	48918000	20933000	8729600	12203000	23866000	13049000	10817000	32605000	18320000	14285000	27547000	15934000	11613000	45333	3229	42670	274573;274574;274575;274576;274577	368411;368412;368413;368414;368415;368416	368414			6	
SGDGITFGVFGSK	1	Unmodified	1270.6194	0.61936665	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			69.997	69.433	2	0.001333	61205	160511_QHF_FH_JSI9i_2	60.49	52.446			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45334	462	42671	274578;274579	368417;368418	368418			2	
SGDHLHNDSQIEADFR	0	Acetyl (Protein N-term)	1881.8242	0.82416748	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	2	8								2	3	3	2	41.105	40.275	2;3	2.6886E-08	34288	160511_QHF_FH_JSI12i_2	121.82	120.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45335	998	42672	274580;274581;274582;274583;274584;274585;274586;274587;274588;274589	368419;368420;368421;368422;368423;368424;368425;368426;368427;368428	368421			10	
SGDITYGQFAQLYR	0	Unmodified	1617.7787	0.77872084	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	71.02	70.069	2	0.00043232	60282	160511_QHF_FH_JSI12i_2	96.847	74.314			0.62667	0.65269	61.078	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98738	1.0053	NaN	1	1	Median	0.39774	0.42378	NaN	1	1	Median	45494000	27984000	17511000	0	0	0	0	0	0	28151000	15439000	12712000	17343000	12544000	4799200	45336	1152	42673	274590;274591;274592;274593	368429;368430;368431;368432	368429			4	
SGDKPGR	1	Acetyl (K)	757.37187	0.37186616	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	5.9657	-1.2692	2	0.0046448	2076	160513_QHF_FH_JSI12Kac_3	101.33	29.189			0.10727	0.1113	123.05	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.047484	0.046626	NaN	1	1	Median	0.24233	0.2657	NaN	1	0	Median	52975000	45006000	7969500	0	0	0	0	0	0	16968000	16128000	839750	36007000	28877000	7129700	45337	3144	42674	274594;274595	368433;368434	368434	2781		2	
SGDLYTQAAEAAMEAMK	1	Unmodified	1785.7913	0.79133572	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		94.996	94.848	2	3.5651E-05	86266	160511_QHF_FH_JSI11i_1	88.552	76.686			1.019	1.092	23.24	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0879	1.287	NaN	1	1	Median	0.95456	0.92651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32366000	15169000	17198000	0	0	0	15956000	6991100	8965100	16410000	8177400	8232700	0	0	0	45338	129	42675	274596;274597;274598	368435;368436;368437	368435			3	
SGDLYVLAADK	1	Unmodified	1150.587	0.58700389	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			2	2	2	3	55.874	51.701	2	5.3152E-06	47084	160511_QHF_FH_JSI12i_1	115.18	70.014			1.7214	1.6789	59.33	9	7	Median	3.1614	2.6515	64.63	2	2	Median	1.2659	1.4896	42.974	2	1	Median	1.5372	1.498	33.071	2	1	Median	1.2998	1.3916	88.965	3	3	Median	1415200000	363140000	1052100000	282140000	65362000	216780000	368570000	100920000	267660000	373840000	93992000	279850000	390670000	102880000	287800000	45339	4983	42676	274599;274600;274601;274602;274603;274604;274605;274606;274607	368438;368439;368440;368441;368442;368443;368444;368445	368440			8	
SGDMGLGVPFNIASYALLTYMIAHITGLK	1	Unmodified	3052.5766	0.57658591	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.39	95.925	3	1.8058E-84	54524	160513_QHF_FH_JSI9Kac_6	206	187.9			0.91752	0.93738	6.03	2	0	Median	1.0283	0.89825	NaN	1	0	Median	0.8187	0.97821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	925400000	479140000	446260000	306300000	146100000	160210000	619100000	333050000	286050000	0	0	0	0	0	0	45340	815	42677	274608;274609	368446;368447;368448;368449	368447			4	
SGDNPVYIWGHSLGTGVATNLVR	0	Unmodified	2412.2186	0.21860699	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			93.114	92.137	3	0.00041477	76787	160511_QHF_FH_JSI10i_3	42.705	39.243			0.89047	1.0328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89047	1.0328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12581000	7600900	4979600	0	0	0	12581000	7600900	4979600	0	0	0	0	0	0	45341	3509	42678	274610	368450	368450			1	
SGDSEVYQLGDVSQK	1	Unmodified	1610.7424	0.74239491	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	8				4	6				2	6	3	7	50.308	44.745	2;3	5.2805E-117	39584	160511_QHF_FH_JSI9i_1	335.32	322.69			0.91959	0.99928	13.63	16	2	Median	1.4238	1.1578	6.3713	2	0	Median	0.90707	1.0198	6.868	5	0	Median	0.99356	0.96026	5.8922	3	0	Plateau	0.81543	0.88621	17.696	6	2	Median	3201100000	1434700000	1766400000	740120000	259060000	481060000	974130000	499850000	474280000	657500000	287510000	369990000	829320000	388300000	441020000	45342	2222	42679	274611;274612;274613;274614;274615;274616;274617;274618;274619;274620;274621;274622;274623;274624;274625;274626;274627;274628	368451;368452;368453;368454;368455;368456;368457;368458;368459;368460;368461;368462;368463;368464;368465;368466;368467;368468;368469;368470;368471;368472;368473;368474;368475;368476;368477;368478;368479;368480;368481;368482;368483;368484;368485;368486	368475			36	
SGDWKGYTGK	2	Acetyl (K)	1139.5247	0.52473799	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	42.089	32.121	2	0.00021145	18490	160513_QHF_FH_JSI10Kac_4	98.04	59.264			0.1522	0.16582	110.88	3	2	Median	NaN	NaN	NaN	0	0	Median	0.81495	0.97844	NaN	1	0	Median	0.13227	0.12741	NaN	1	1	Median	0.1522	0.16582	NaN	1	1	Median	132510000	100150000	32356000	0	0	0	39340000	18074000	21266000	41774000	37222000	4552100	51393000	44855000	6538000	45343	856	42680	274629;274630;274631	368487;368488;368489;368490	368488	537		4	
SGDWMIDYVSNR	0	Unmodified	1441.6296	0.62961376	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.116	69.225	2	0.0025646	59515	160511_QHF_FH_JSI12i_2	69.979	55.007			1.0907	1.2014	30.215	4	1	Median	1.6273	1.3675	NaN	1	0	Median	0.98635	1.2094	NaN	1	0	Median	1.206	1.1934	NaN	1	0	Median	0.63368	0.69412	NaN	1	1	Median	125080000	60337000	64743000	22973000	9673900	13299000	34905000	14675000	20229000	47773000	24132000	23641000	19430000	11856000	7573900	45344	1435	42681	274632;274633;274634;274635	368491;368492;368493	368491			1	
SGEDEQQEQTIAEDLVVTK	1	Acetyl (Protein N-term)	2160.007	0.007002036	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.629	8		1							2	3	2	2	79.516	78.946	2;3	1.5718E-139	71929	160511_QHF_FH_JSI11i_1	136.99	122.3			1.0108	1.0784	5.0216	8	0	Median	1.3114	1.0852	0.90395	2	0	Median	0.95159	1.1125	2.6251	2	0	Median	1.0308	1.0033	4.9296	2	0	Median	1.0003	1.0437	4.6271	2	0	Median	2848500000	1403300000	1445200000	620460000	294210000	326250000	705110000	346760000	358350000	774590000	392370000	382230000	748310000	369920000	378390000	45345	5475	42682	274636;274637;274638;274639;274640;274641;274642;274643;274644	368494;368495;368496;368497;368498;368499;368500;368501;368502;368503;368504;368505;368506;368507;368508;368509	368496			16	
SGEEDEEILFK	1	Unmodified	1294.5929	0.59287713	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.573	51.904	2	2.4536E-07	46850	160511_QHF_FH_JSI11i_1	121.5	106.24			0.84618	0.92423	16.619	4	0	Median	1.2558	1.0464	NaN	1	0	Median	0.7936	0.92827	NaN	1	0	Median	0.71834	0.70579	NaN	1	0	Median	0.90223	0.92022	NaN	1	0	Median	545980000	309720000	236260000	118170000	55991000	62181000	195390000	110210000	85184000	119800000	70779000	49022000	112620000	72740000	39875000	45346	1685	42683	274645;274646;274647;274648	368510;368511;368512;368513;368514;368515	368510			6	
SGEEDFESLASQFSDCSSAK	1	Unmodified	2179.8852	0.88517234	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	78.496	78.156	2;3	5.9486E-16	71212	160511_QHF_FH_JSI11i_1	154.6	151.89			0.74228	0.77595	18.674	4	2	Median	NaN	NaN	NaN	0	0	Median	0.69092	0.78839	NaN	1	1	Median	0.72517	0.69866	12.589	2	1	Median	0.97003	1.0063	NaN	1	0	Median	127310000	69177000	58128000	0	0	0	26423000	16377000	10046000	59572000	32778000	26794000	41311000	20023000	21288000	45347	2433	42684	274649;274650;274651;274652	368516;368517;368518;368519	368517			4	
SGEENPASKPTPVQDVQGDGR	1	Acetyl (Protein N-term)	2209.0247	0.024717786	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	34.749	34.143	2;3	4.941E-102	30739	160511_QHF_FH_JSI11i_1	118.33	118.33			1.0672	1.0738	7.5362	8	0	Median	1.1957	0.98435	3.6445	2	0	Median	0.92673	1.0892	0.53915	2	0	Median	1.0672	1.0291	4.5625	2	0	Median	1.0939	1.1542	8.7523	2	0	Median	1430400000	712900000	717480000	265400000	122280000	143120000	428570000	210740000	217830000	372480000	186700000	185790000	363930000	193180000	170750000	45348	2629	42685	274653;274654;274655;274656;274657;274658;274659;274660	368520;368521;368522;368523;368524;368525;368526;368527;368528;368529;368530;368531;368532;368533	368522			14	
SGEGEVSGLMR	0	Unmodified	1120.5183	0.5182724	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			3	2	3	3	33.827	32.143	2	1.3905E-09	27142	160511_QHF_FH_JSI12i_2	134.68	111.94			0.98295	1.0536	26.283	11	1	Median	1.6901	1.3781	36.844	3	0	Median	0.86334	1.0355	5.1506	2	0	Median	1.0814	1.0536	8.946	3	0	Median	0.74053	0.78655	35.874	3	1	Median	4510200000	2212900000	2297300000	1021300000	389060000	632270000	1209100000	636310000	572750000	1225100000	618240000	606890000	1054700000	569290000	485430000	45349	2380	42686	274661;274662;274663;274664;274665;274666;274667;274668;274669;274670;274671	368534;368535;368536;368537;368538;368539;368540;368541;368542;368543;368544;368545;368546;368547	368535			13	
SGEGEVSGLMR	0	Oxidation (M)	1136.5132	0.51318702	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	4.75	5.36	1	2					1			1		1	2	30.639	27.254	2	0.0042469	29093	160511_QHF_FH_JSI12i_1	66.19	54.597			1.176	1.1393	16.702	3	0	Plateau	1.345	1.1598	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84637	0.84887	NaN	1	0	Median	1.0282	1.1001	NaN	1	0	Median	55107000	26158000	28949000	27082000	11496000	15586000	0	0	0	3708800	1937700	1771200	24315000	12723000	11592000	45350	2380	42686	274672;274673;274674;274675	368548;368549;368550;368551	368548		1935	4	
SGEGFIDFIGQVHK	1	Unmodified	1532.7623	0.7623425	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	75.938	75.523	3	0.00013254	67361	160511_QHF_FH_JSI11i_3	70.438	58.729			1.3829	1.3717	26.244	4	1	Median	NaN	NaN	NaN	0	0	Median	0.78205	0.92224	NaN	1	0	Median	1.6439	1.593	4.1189	2	1	Median	1.1795	1.216	NaN	1	0	Median	72555000	33197000	39358000	0	0	0	17619000	8751400	8867400	31064000	13348000	17716000	23872000	11097000	12775000	45351	2390	42687	274676;274677;274678;274679	368552;368553;368554;368555	368552			4	
SGEGIREPISVK	1	Unmodified	1270.6881	0.68811492	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.228	29.228	3	0.026323	25223	160511_QHF_FH_JSI11i_3	32.478	23.965			1.2186	1.1728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2186	1.1728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	169880000	76179000	93703000	0	0	0	0	0	0	169880000	76179000	93703000	0	0	0	45352	264	42688	274680	368556;368557	368557			2	
SGEGMGIR	0	Unmodified	805.37524	0.37523698	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	11.909	11.488	2	0.016008	8913	160511_QHF_FH_JSI11i_2	49.933	30.087			1.3167	1.2235	41.768	4	0	Median	1.7395	1.4984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4455	1.4178	49.5	2	0	Median	0.72255	0.78708	NaN	1	0	Median	273860000	133730000	140120000	55957000	17671000	38285000	0	0	0	137350000	66644000	70701000	80555000	49417000	31139000	45353	1002	42689	274681;274682;274683;274684	368558	368558			1	
SGEGSQHPFGAMNIVR	0	Unmodified	1685.7944	0.79438768	2851	Q53FT3	C11orf73	Protein Hikeshi	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	3	2	2	45.563	44.796	2;3	8.8259E-09	39502	160511_QHF_FH_JSI10i_2	101.93	78.324			1.0302	1.0555	22.984	7	2	Median	1.4514	1.2538	10.326	2	1	Median	0.94097	1.1161	9.6706	2	1	Median	1.0277	1.0032	7.1927	2	0	Median	0.64465	0.65818	NaN	1	0	Median	505100000	256380000	248720000	99107000	44803000	54305000	142570000	80023000	62549000	145180000	61650000	83533000	118240000	69905000	48332000	45354	2851	42690	274685;274686;274687;274688;274689;274690;274691;274692;274693	368559;368560;368561;368562;368563;368564;368565;368566;368567;368568	368565			9	
SGEHDFGAAFDGDGDRNMILGK	1	Unmodified	2308.0179	0.017858269	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	62.081	61.799	3;4	4.0092E-13	54942	160511_QHF_FH_JSI11i_3	116.43	107.5			1.0279	1.0224	35.299	6	5	Median	NaN	NaN	NaN	0	0	Median	1.0128	1.2422	NaN	1	1	Median	1.0878	1.0224	2.6604	2	1	Median	0.80244	0.80457	39.713	3	3	Plateau	921390000	419980000	501420000	0	0	0	33370000	11897000	21473000	533050000	216260000	316790000	354970000	191820000	163150000	45355	1460	42691	274694;274695;274696;274697;274698;274699	368569;368570;368571;368572;368573;368574;368575;368576;368577;368578	368571			10	
SGEHDFGAAFDGDGDRNMILGK	1	Oxidation (M)	2324.0128	0.012772891	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		53.735	53.735	3	0.011483	47611	160511_QHF_FH_JSI11i_3	36.111	27.721			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45356	1460	42691	274700	368579	368579		1130	1	
SGEINPVK	1	Unmodified	842.44978	0.44978213	4771	Q9H7N4;Q9P1Y6	SCAF1;PHRF1	Splicing factor, arginine/serine-rich 19;PHD and RING finger domain-containing protein 1	yes	no	0	0	0	0	By matching	By matching	By MS/MS		1	0	3									1	1	1		14.32	13.874	2	0.042344	11332	160511_QHF_FH_JSI11i_1	38.962	24.805			0.71174	0.76439	16.484	3	0	Plateau	1.2409	1.0201	NaN	1	0	Median	0.64729	0.76439	NaN	1	0	Median	0.82211	0.76914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	191940000	92640000	99296000	56462000	20556000	35906000	68210000	39842000	28368000	67263000	32242000	35021000	0	0	0	45357	4771	42692	274701;274702;274703	368580	368580			1	
SGELAQEYDK	1	Unmodified	1138.5142	0.51423288	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0				By MS/MS	13	0						1							1	26.49	19.256	2	0.011952	11475	160513_QHF_FH_JSI12Kac_3	64.04	25.018			2.1844	2.3766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1844	2.3766	NaN	1	1	Median	4089800	1112600	2977200	0	0	0	0	0	0	0	0	0	4089800	1112600	2977200	45358	2560	42693	274704	368581	368581			1	
SGELAVR	0	Unmodified	730.39735	0.39735263	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	3	3	1	13.447	10.944	2	0.0046967	9618	160511_QHF_FH_JSI10i_2	97.602	34.888			1.1399	1.2086	14.135	8	0	Median	1.7433	1.4786	NaN	1	0	Median	0.98342	1.1547	5.8259	3	0	Median	1.2286	1.2097	4.9688	3	0	Median	0.81809	0.90331	NaN	1	0	Median	1107100000	513160000	593910000	139680000	50658000	89024000	325120000	151250000	173880000	442830000	200130000	242700000	199440000	111130000	88309000	45359	1675	42694	274705;274706;274707;274708;274709;274710;274711;274712	368582;368583;368584;368585;368586;368587;368588;368589	368588			8	
SGELNGDQVSLGTK	1	Unmodified	1403.6892	0.68923713	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.768	35.16	2	6.2863E-05	31581	160511_QHF_FH_JSI11i_1	116.51	88.306			1.0867	1.2072	25.415	4	4	Median	2.1128	1.7584	NaN	1	1	Median	1.0697	1.2562	NaN	1	1	Median	0.99961	0.9563	NaN	1	1	Median	1.1039	1.1601	NaN	1	1	Median	131990000	58969000	73017000	22727000	5992900	16734000	36141000	17507000	18634000	51637000	22615000	29022000	21480000	12854000	8626600	45360	4002	42695	274713;274714;274715;274716	368590;368591;368592;368593	368590			4	
SGELPPNINIK	1	Acetyl (Protein N-term)	1222.6558	0.65575216	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	66.739	65.727	2	0.0002618	59080	160511_QHF_FH_JSI9i_1	78.192	69.279			0.2647	0.219	272.68	2	2	Median	0.2647	0.219	272.68	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	441730000	215200000	226540000	441730000	215200000	226540000	0	0	0	0	0	0	0	0	0	45361	4806	42696	274717;274718;274719;274720	368594;368595;368596;368597;368598;368599;368600	368599			7	
SGELQGGPDDNLIEGGGTK	1	Unmodified	1842.8595	0.85954994	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	46.734	46.056	2	1.422E-23	41623	160511_QHF_FH_JSI11i_1	136.17	119.23			1.2556	1.1981	21.126	4	1	Median	1.5988	1.3759	NaN	1	0	Median	0.89401	1.0432	NaN	1	0	Median	1.6265	1.5546	NaN	1	1	Median	0.98601	1.0085	NaN	1	0	Median	143650000	69153000	74493000	37240000	15086000	22154000	47936000	24944000	22992000	25519000	9680400	15839000	32951000	19443000	13509000	45362	3962	42697	274721;274722;274723;274724;274725	368601;368602;368603;368604;368605;368606;368607;368608	368602			8	
SGENQSVDK	1	Unmodified	962.4305	0.43050325	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.6	5.64	3				1	1				2		2	1	4.6954	0.91962	2	3.7164E-06	2279	160511_QHF_FH_JSI11i_1	135.63	56.575			1.6228	1.1293	26.19	4	2	Linear	1.3532	1.1069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2826	1.2354	9.86	2	1	Median	0.66062	0.72186	NaN	1	0	Median	291570000	128870000	162700000	72916000	32963000	39953000	0	0	0	217280000	95211000	122070000	1369300	692410	676890	45363	3264	42698	274726;274727;274728;274729;274730	368609;368610;368611;368612;368613	368609			5	
SGEPQTFTLK	1	Unmodified	1106.5608	0.56078914	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			1	2	3	2	37.826	35.667	2	2.4523E-09	31353	160511_QHF_FH_JSI9i_1	128.86	93.413			0.7604	0.8613	20.969	7	1	Median	1.2574	1.0182	NaN	1	0	Median	0.68649	0.83031	5.182	2	1	Median	1.0193	0.99584	10.797	2	0	Median	0.63569	0.67031	22.998	2	0	Median	2401600000	1228600000	1173000000	408260000	174150000	234110000	700110000	380030000	320080000	718560000	355160000	363400000	574690000	319290000	255400000	45364	841	42699	274731;274732;274733;274734;274735;274736;274737;274738	368614;368615;368616;368617;368618;368619;368620;368621;368622;368623	368620			10	
SGEQIFTQDVRPEQLLEGK	1	Unmodified	2173.1015	0.10151154	3808	Q8WXE0	CASKIN2	Caskin-2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	77.302	76.078	3	0.012955	66778	160511_QHF_FH_JSI11i_2	38.824	29.036			0.37571	0.41146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37571	0.41146	NaN	1	1	Median	19394000	14849000	4544600	0	0	0	0	0	0	0	0	0	19394000	14849000	4544600	45365	3808	42700	274739;274740	368624;368625	368625			2	
SGERPVTAGEEDEQVPDSIDAR	0	Unmodified	2356.0779	0.077875568	5584	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.108	39.478	3	7.4896E-10	35881	160511_QHF_FH_JSI12i_1	106.35	99.139			0.99287	1.0553	21.185	4	0	Median	1.7242	1.4114	NaN	1	0	Median	0.88826	1.0398	NaN	1	0	Median	1.1098	1.071	NaN	1	0	Median	0.80942	0.84245	NaN	1	0	Median	490860000	249070000	241790000	35750000	12450000	23300000	160350000	89068000	71285000	158580000	75790000	82787000	136180000	71759000	64416000	45366	5584	42701	274741;274742;274743;274744	368626;368627;368628;368629;368630;368631;368632	368628			7	
SGESNTHQDIEEK	1	Unmodified	1472.6379	0.63792984	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	6.9693	6.6317	2;3	7.8571E-32	4526	160511_QHF_FH_JSI10i_1	205.72	169.39			1.0424	1.0489	14.407	9	2	Median	1.3478	1.1036	17.068	2	0	Median	0.83015	0.97684	10.069	2	0	Median	1.2132	1.1587	0.42857	2	0	Median	0.76035	0.79319	14.58	3	2	Plateau	668070000	343100000	324970000	145500000	74712000	70788000	147650000	76141000	71513000	142440000	66612000	75832000	232470000	125630000	106840000	45367	598	42702	274745;274746;274747;274748;274749;274750;274751;274752;274753	368633;368634;368635;368636;368637;368638;368639;368640;368641;368642;368643	368642			11	
SGETEDTFIADLVVGLCTGQIK	1	Unmodified	2352.1519	0.15189213	854;1044;922	P06733;P09104;P13929	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	6.31	5	3	3						4	2	6	4	3	101.09	99.022	2;3	1.3937E-57	93076	160511_QHF_FH_JSI10i_1	274.48	254.9			0.9354	0.99695	28.338	14	1	Median	1.2435	1.0486	4.079	2	0	Median	0.82089	0.97555	23.128	5	0	Median	0.89697	0.89043	45.777	4	1	Median	0.99378	1.041	31.247	3	0	Median	2900600000	1516500000	1384100000	98185000	40323000	57862000	1132800000	643380000	489390000	935950000	465590000	470360000	733690000	367200000	366490000	45368	854;922;1044	42703	274754;274755;274756;274757;274758;274759;274760;274761;274762;274763;274764;274765;274766;274767;274768	368644;368645;368646;368647;368648;368649;368650;368651;368652;368653;368654;368655;368656;368657;368658	368651			12	
SGEVAVLK	1	Unmodified	801.45962	0.45961853	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.063	21.925	2	0.053461	18929	160511_QHF_FH_JSI11i_1	45.335	22.316			2.1156	2.0173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1156	2.0173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38958000	14589000	24369000	0	0	0	0	0	0	38958000	14589000	24369000	0	0	0	45369	5647	42704	274769	368659	368659			1	
SGEVLVNVK	1	Unmodified	943.53385	0.53384611	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							3	4	1	1	31.983	31.105	2	5.8402E-06	27729	160511_QHF_FH_JSI11i_1	114.28	90.095			0.92249	1.0641	24.343	7	1	Median	1.7219	1.4202	6.1441	2	0	Median	0.85895	1.0174	6.3065	3	1	Plateau	0.92249	0.91248	NaN	1	0	Median	0.68354	0.71897	NaN	1	0	Median	1737700000	866930000	870750000	258930000	99051000	159880000	607650000	314560000	293090000	424650000	210870000	213780000	446440000	242440000	204000000	45370	2391	42705	274770;274771;274772;274773;274774;274775;274776;274777;274778	368660;368661;368662;368663;368664;368665;368666;368667;368668;368669;368670;368671;368672	368661			12	
SGEVLVNVKEHSR	1	Acetyl (K)	1494.7791	0.77905519	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.108	36.449	3	0.00019096	19887	160513_QHF_FH_JSI11Kac_6	81.311	68.928			0.54977	0.53705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54977	0.53705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6443900	3952600	2491300	0	0	0	0	0	0	6443900	3952600	2491300	0	0	0	45371	2391	42706	274779	368673	368673	2463		1	
SGFARPGDVEFEDFSQPMNR	0	Unmodified	2285.0171	0.017129987	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		68.403	67.61	3	4.1681E-25	60099	160511_QHF_FH_JSI10i_2	174.2	165.38			0.68113	0.88938	23.459	4	0	Linear	1.8302	1.553	NaN	1	0	Median	0.83799	1.0142	18.044	2	0	Median	1.3781	1.323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	295000000	139880000	155120000	51401000	17778000	33623000	188880000	92865000	96011000	54721000	29237000	25484000	0	0	0	45372	2690	42707	274780;274781;274782;274783	368674;368675;368676;368677;368678;368679;368680	368680			7	
SGFDDPGIFYSDSFGGDAQADEGQARK	1	Acetyl (Protein N-term)	2878.2318	0.23181003	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	86.211	85.718	2;3	1.1743E-07	77980	160511_QHF_FH_JSI10i_1	66.965	56.768			1.1626	1.2212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1626	1.2212	NaN	1	0	Median	77484000	36250000	41235000	0	0	0	0	0	0	0	0	0	77484000	36250000	41235000	45373	1410	42708	274784;274785	368681;368682	368682			2	
SGFEDMFAK	1	Unmodified	1030.443	0.44298219	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.771	58.437	2	0.00056389	50031	160511_QHF_FH_JSI12i_2	78.334	72.022			0.73532	0.83745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73532	0.83745	NaN	1	0	Median	52907000	32331000	20576000	0	0	0	0	0	0	0	0	0	52907000	32331000	20576000	45374	1685	42709	274786	368683	368683			1	
SGFEGMFIR	0	Unmodified	1042.4906	0.49060109	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	64.973	64.079	2	0.037475	56844	160511_QHF_FH_JSI10i_2	38.55	31.399			1.5834	1.5867	49.286	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.4441	1.7843	NaN	1	0	Median	1.5834	1.5867	NaN	1	0	Median	0.63932	0.72091	NaN	1	0	Median	199480000	74296000	125180000	0	0	0	70371000	22581000	47790000	99489000	32477000	67012000	29618000	19238000	10380000	45375	1685	42710	274787;274788;274789	368684	368684			1	
SGFEGMFIRK	1	Unmodified	1170.5856	0.5855641	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		51.566	50.386	3	1.2443E-06	44240	160511_QHF_FH_JSI11i_3	91.658	74.716			0.83411	0.81708	32.88	4	1	Median	1.1826	0.97607	NaN	1	0	Median	0.674	0.78429	50.934	2	1	Median	0.72065	0.68398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	330510000	169300000	161210000	70816000	26256000	44559000	129310000	73856000	55451000	130390000	69187000	61199000	0	0	0	45376	1685	42711	274790;274791;274792;274793	368685;368686;368687;368688;368689	368685			5	
SGFEGMFTK	1	Unmodified	1002.4481	0.44806757	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	52.745	51.769	2	0.00014554	45792	160511_QHF_FH_JSI10i_2	107.15	89.118			1.1989	1.2492	13.368	6	1	Median	1.8568	1.562	NaN	1	0	Median	1.0164	1.198	18.22	2	1	Median	1.2796	1.2492	2.9596	2	0	Median	1.0665	1.1821	NaN	1	0	Median	1359300000	629430000	729820000	235830000	73933000	161900000	308260000	156380000	151880000	565300000	263540000	301760000	249870000	135580000	114290000	45377	1685	42712	274794;274795;274796;274797;274798;274799	368690;368691;368692;368693;368694;368695;368696;368697	368697			8	
SGFEPASLK	1	Unmodified	934.476	0.47599688	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.06	5	4	3				2	1		3	3	6	3	37.333	33.93	2	3.5113E-06	30380	160511_QHF_FH_JSI11i_1	112.84	74.604			1.0888	1.1206	25.702	11	1	Median	1.6717	1.3829	4.1786	2	0	Median	0.90166	1.0635	21.387	2	0	Median	1.1358	1.1206	11.405	5	1	Median	0.62852	0.69146	23.802	2	0	Median	3889600000	1875500000	2014100000	700680000	259730000	440950000	644870000	362260000	282610000	2045500000	965860000	1079700000	498530000	287610000	210920000	45378	1436	42713	274800;274801;274802;274803;274804;274805;274806;274807;274808;274809;274810;274811;274812;274813;274814	368698;368699;368700;368701;368702;368703;368704;368705;368706;368707;368708;368709;368710;368711;368712;368713;368714;368715;368716;368717;368718;368719	368700			22	
SGFGEISSPVIR	0	Unmodified	1247.651	0.65100113	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		58.51	58.007	2	3.613E-05	50283	160511_QHF_FH_JSI11i_2	112.89	91.922			1.035	1.0521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.035	1.0521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	164720000	76127000	88591000	0	0	0	0	0	0	164720000	76127000	88591000	0	0	0	45379	1895	42714	274815;274816	368720;368721	368721			2	
SGFGKFER	1	Acetyl (K)	968.47158	0.4715802	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.696							1	3	4	1	3	2	2	47.016	37.234	2	0.0028772	20562	160513_QHF_FH_JSI10Kac_6	94.692	70.899			0.8377	0.88692	25.792	8	0	Median	1.5159	1.2676	NaN	1	0	Median	0.92528	1.0687	3.1315	3	0	Median	0.78934	0.7621	0.90945	2	0	Median	0.60813	0.65001	2.0251	2	0	Median	233770000	126910000	106860000	14916000	5741100	9175400	73883000	37531000	36353000	94875000	52424000	42451000	50091000	31214000	18878000	45380	154	42715	274817;274818;274819;274820;274821;274822;274823;274824	368722;368723;368724;368725;368726	368726	91		5	
SGFHPDPR	0	Unmodified	911.42496	0.42496436	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	10.416	10.308	2;3	0.0042745	7645	160511_QHF_FH_JSI12i_3	69.198	55.526			0.82138	0.87564	23.544	4	1	Median	NaN	NaN	NaN	0	0	Median	0.62872	0.76949	NaN	1	1	Median	1.1039	1.0341	5.2404	2	0	Median	0.62868	0.64419	NaN	1	0	Median	517430000	264750000	252670000	0	0	0	44302000	28961000	15341000	361070000	168380000	192690000	112060000	67414000	44642000	45381	751	42716	274825;274826;274827;274828;274829	368727;368728;368729;368730	368730			4	
SGFLEELLGEK	1	Acetyl (Protein N-term)	1262.6394	0.63943339	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	1	0	0	By matching	By MS/MS	By matching	By MS/MS	1.67	0.471	2	4								1	2	1	2	103.09	102.99	2	3.0752E-06	93828	160511_QHF_FH_JSI10i_1	64.297	51.67			0.61752	0.92658	28.434	5	0	Linear	1.0783	0.92658	NaN	1	0	Median	0.78105	0.90746	NaN	1	0	Median	1.0609	1.078	NaN	1	0	Median	0.72564	0.79521	50.937	2	0	Median	152200000	79070000	73130000	20078000	7058000	13020000	38304000	21595000	16709000	23465000	10571000	12894000	70353000	39846000	30508000	45382	3038	42717	274830;274831;274832;274833;274834;274835	368731;368732;368733;368734;368735	368734			5	
SGFLPCR	0	Unmodified	835.40106	0.4010578	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.768	29.714	2	0.018161	24986	160511_QHF_FH_JSI12i_3	54.525	35.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45383	5445	42718	274836	368736	368736			1	
SGFLVWR	0	Unmodified	863.46537	0.46537261	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	72.618	63.856	2	0.0077925	35039	160513_QHF_FH_JSI10Kac_6	88.643	71.938			0.98414	1.0511	26.412	4	0	Median	1.2915	1.1292	NaN	1	0	Median	0.83516	0.98567	NaN	1	0	Median	1.1597	1.1208	NaN	1	0	Median	0.62302	0.6443	NaN	1	0	Median	231690000	122020000	109680000	36406000	17341000	19065000	130290000	72129000	58157000	46025000	21974000	24051000	18975000	10572000	8403200	45384	4259	42719	274837;274838;274839;274840	368737;368738	368737			2	
SGFNFGGTGAPTGGFTFGTAK	1	Acetyl (Protein N-term)	2019.9327	0.9326553	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			97.975	97.817	2	7.0724E-11	88713	160511_QHF_FH_JSI10i_1	119.56	105.3			3.013	2.9061	24.965	2	2	Median	4.3183	3.4672	NaN	1	1	Median	2.1023	2.4358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70825000	13315000	57509000	41628000	5111900	36516000	29197000	8203600	20994000	0	0	0	0	0	0	45385	1467	42720	274841;274842	368739;368740	368739			2	
SGFNLEELEK	1	Unmodified	1164.5663	0.56626845	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.5	0.5	2	2								1	2	1		63.078	62.423	2	0.0039848	56652	160511_QHF_FH_JSI11i_1	55.806	43.851			0.96599	0.97028	18.748	4	1	Median	1.0915	0.95132	NaN	1	0	Median	0.71018	0.84538	22.28	2	1	Median	1.1582	1.128	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	233020000	130410000	102620000	42247000	20056000	22190000	138080000	82745000	55336000	52696000	27606000	25090000	0	0	0	45386	4481	42721	274843;274844;274845;274846	368741;368742	368741			2	
SGFNPNQGFFK	1	Unmodified	1241.5829	0.58292157	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	56.073	55.479	2	1.5531E-09	47626	160511_QHF_FH_JSI12i_3	158.76	128.19			0.99232	1.0909	9.4653	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99232	1.0909	NaN	1	0	Median	1.1971	1.114	NaN	1	0	Median	0.90266	0.93664	NaN	1	0	Median	242600000	107170000	135430000	0	0	0	29861000	14090000	15771000	97849000	35910000	61939000	114890000	57172000	57719000	45387	2661	42722	274847;274848;274849	368743;368744;368745;368746;368747;368748	368748			6	
SGFNSKSGQR	1	Acetyl (K)	1108.5261	0.52613497	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		14.511	5.7105	2	0.0023603	6079	160513_QHF_FH_JSI11Kac_4	79.974	65.817			0.74955	0.81236	59.63	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0409	1.2384	NaN	1	0	Median	0.53976	0.53288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10226000	6222100	4004200	0	0	0	3487000	1756200	1730800	6739300	4465900	2273300	0	0	0	45388	882	42723	274850;274851	368749;368750	368750	622		2	
SGFSAQQVATQATAK	1	Unmodified	1493.7474	0.74742071	1291	P27540	ARNT	Aryl hydrocarbon receptor nuclear translocator	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		40.385	40.027	2	3.9437E-21	35895	160511_QHF_FH_JSI10i_1	136.3	123.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45389	1291	42724	274852;274853	368751;368752	368752			2	
SGFSLDNGELR	0	Unmodified	1193.5677	0.56766543	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	49.976	49.141	2	2.8184E-13	42350	160511_QHF_FH_JSI11i_2	150.61	139.97			1.4895	1.5258	26.431	6	1	Median	2.031	1.6939	NaN	1	0	Median	1.0584	1.2545	NaN	1	0	Median	1.6707	1.6566	21.173	2	1	Median	1.1389	1.2231	40.819	2	0	Median	356500000	157410000	199090000	63688000	23137000	40551000	49897000	21854000	28043000	142800000	56940000	85858000	100120000	55480000	44636000	45390	5453	42725	274854;274855;274856;274857;274858;274859	368753;368754;368755;368756;368757	368756			5	
SGFSTEER	0	Acetyl (Protein N-term)	953.40904	0.40903953	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	1	0	0			By MS/MS	By MS/MS	6	5	1			1								1	1	24.476	20.442	2	0.0024591	18300	160511_QHF_FH_JSI12i_1	66.351	61.496			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45391	2641	42726	274860;274861	368758;368759	368758			2	
SGFWTIWLWNK	1	Unmodified	1436.7241	0.7241065	1160	P19474	TRIM21	E3 ubiquitin-protein ligase TRIM21	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			95.924	88.53	2	6.6324E-19	49522	160513_QHF_FH_JSI9Kac_6	176.38	151.53			1.0167	1.0322	20.104	2	1	Median	1.3785	1.1899	NaN	1	1	Median	0.74991	0.89541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	238780000	112730000	126050000	113100000	50218000	62884000	125680000	62510000	63166000	0	0	0	0	0	0	45392	1160	42727	274862;274863	368760;368761;368762	368760			3	
SGGAATVEEAPSEFEEEASR	0	Unmodified	2051.892	0.89197228	3744	Q8TF64	GIPC3	PDZ domain-containing protein GIPC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.465	54.807	2	4.8378E-68	49670	160511_QHF_FH_JSI11i_1	236.3	228.69			1.2936	0.96244	13.563	4	0	Linear	1.3761	1.1002	NaN	1	0	Median	0.87413	0.99717	NaN	1	0	Median	0.97521	0.92892	NaN	1	0	Median	0.77244	0.7971	NaN	1	0	Median	151180000	73622000	77563000	41408000	18129000	23279000	35420000	19158000	16262000	39437000	18116000	21321000	34920000	18219000	16701000	45393	3744	42728	274864;274865;274866;274867	368763;368764;368765;368766;368767;368768;368769	368764			7	
SGGDKMFSLK	2	Acetyl (K)	1110.5379	0.53794521	5235	Q9UBF6	RNF7	RING-box protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		60.598	49.728	2	0.015523	27311	160513_QHF_FH_JSI10Kac_4	55.314	43.03			0.9138	1.0087	41.068	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1117	1.3486	NaN	1	0	Median	0.75114	0.75449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8224000	4646400	3577600	0	0	0	4672000	2390500	2281400	3552000	2255900	1296100	0	0	0	45394	5235	42729	274868;274869	368770	368770	3343		1	
SGGDQTSVDPMVLEQYVVVANYQK	1	Unmodified	2626.2585	0.25848247	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	100.74	100.59	3	2.2503E-12	91193	160511_QHF_FH_JSI12i_1	114.04	109.87			0.88329	0.95262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88329	0.95262	NaN	1	1	Median	36684000	24254000	12430000	0	0	0	0	0	0	0	0	0	36684000	24254000	12430000	45395	11	42730	274870;274871	368771;368772;368773	368772			3	
SGGELDIVVTSNK	1	Unmodified	1317.6776	0.67760981	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	48.138	47.637	2	9.7983E-06	42827	160511_QHF_FH_JSI10i_1	124.6	103.14			0.91996	0.9141	12.3	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91996	1.0711	NaN	1	0	Median	0.95083	0.9141	NaN	1	0	Median	0.81752	0.8407	NaN	1	0	Median	205640000	109130000	96508000	0	0	0	72015000	40129000	31886000	61697000	28727000	32970000	71930000	40278000	31652000	45396	4171	42731	274872;274873;274874	368774;368775;368776;368777;368778;368779	368779			6	
SGGEQAQDWDALPPK	1	Unmodified	1597.7372	0.73724996	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	8									1	3	4		47.685	47.268	2	3.9129E-08	41905	160511_QHF_FH_JSI9i_1	99.941	74.504			0.9977	0.93984	30.31	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1491	1.2767	NaN	1	1	Median	0.8402	0.80897	21.206	2	1	Median	NaN	NaN	NaN	0	0	Median	71386000	38449000	32938000	0	0	0	19015000	7307300	11708000	52372000	31141000	21230000	0	0	0	45397	3916	42732	274875;274876;274877;274878;274879;274880;274881;274882	368780;368781;368782;368783;368784;368785;368786;368787	368787			8	
SGGFQSMGLSYPVFK	1	Unmodified	1603.7705	0.77046434	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	83.344	82.755	2	2.3569E-07	71544	160511_QHF_FH_JSI12i_2	173.19	125.63			1.3301	1.4246	32.931	5	4	Median	1.612	1.4246	NaN	1	1	Median	1.2439	1.5169	NaN	1	1	Median	1.0122	0.96626	45.133	2	1	Median	1.4213	1.5381	NaN	1	1	Median	240630000	100570000	140050000	31016000	13848000	17168000	54144000	17888000	36256000	99021000	48029000	50993000	56444000	20807000	35636000	45398	3720	42733	274883;274884;274885;274886;274887	368788;368789;368790;368791;368792	368789			5	
SGGGFGPDPGSGTTVPAR	0	Unmodified	1615.759	0.75904803	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.472	36.988	2	2.0053E-16	33397	160511_QHF_FH_JSI11i_1	141.46	110.9			1.0004	1.1237	23.177	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1049	1.3238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90584	0.9538	NaN	1	1	Median	140210000	74308000	65904000	0	0	0	77932000	40738000	37193000	0	0	0	62280000	33570000	28710000	45399	4724	42734	274888;274889;274890	368793;368794;368795	368793			3	
SGGGGDIHQGFQSLLTEVNK	1	Unmodified	2043.0021	0.0021318501	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	5.1	3	8	5						3	3	4	7	5	73.483	71.429	2;3	2.5622E-83	63767	160511_QHF_FH_JSI9i_2	192.98	178.94			0.95648	0.9382	17.268	18	3	Median	1.3426	1.1546	11.762	3	0	Median	0.79445	0.93892	16.052	4	1	Median	0.98924	0.95309	3.5972	6	1	Median	0.75581	0.78938	6.79	5	1	Median	8991100000	4520800000	4470300000	1132900000	496200000	636740000	1372600000	756500000	616100000	3523500000	1684400000	1839100000	2962000000	1583700000	1378300000	45400	1425	42735	274891;274892;274893;274894;274895;274896;274897;274898;274899;274900;274901;274902;274903;274904;274905;274906;274907;274908;274909	368796;368797;368798;368799;368800;368801;368802;368803;368804;368805;368806;368807;368808;368809;368810;368811;368812;368813;368814;368815;368816;368817;368818;368819;368820;368821;368822;368823;368824;368825;368826;368827;368828;368829;368830;368831;368832;368833;368834;368835;368836;368837;368838;368839;368840;368841;368842;368843;368844	368818			49	
SGGGGGGGGSSWGGR	0	Unmodified	1191.5017	0.50171113	2361	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.12	0.781	2	3	3							2	3	3		8.4261	8.095	2	1.2842E-06	5740	160511_QHF_FH_JSI11i_3	133.88	126.23			1.047	1.0652	25.467	8	0	Median	1.7296	1.4612	43.027	2	0	Median	0.85707	0.98898	5.643	3	0	Median	1.1461	1.0655	21.316	3	0	Median	NaN	NaN	NaN	0	0	Median	809370000	379490000	429870000	234570000	95679000	138890000	261640000	149070000	112570000	313160000	134740000	178420000	0	0	0	45401	2361	42736	274910;274911;274912;274913;274914;274915;274916;274917	368845;368846;368847;368848;368849;368850;368851;368852;368853;368854	368845			10	
SGGGGLMEEMNAMLAR	0	Unmodified	1622.7215	0.72148201	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	88.87	88.447	2	3.3021E-30	78517	160511_QHF_FH_JSI10i_2	192.15	177.73			1.3305	1.2574	14.666	6	1	Median	1.5543	1.3019	NaN	1	0	Median	0.9514	1.1759	NaN	1	0	Median	1.3305	1.2643	5.7039	2	1	Median	1.1094	1.1852	30.787	2	0	Median	367700000	174450000	193240000	73975000	28862000	45113000	70316000	40661000	29655000	120080000	53158000	66922000	103330000	51774000	51553000	45402	1710	42737	274918;274919;274920;274921;274922;274923	368855;368856;368857;368858;368859;368860;368861;368862	368860			8	
SGGGGYSQNR	0	Unmodified	981.42642	0.42642093	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	2.7951	2.5469	2	0.0010847	1386	160511_QHF_FH_JSI12i_1	67.993	51.79			0.80675	0.97231	29.196	5	0	Median	1.447	1.2238	NaN	1	0	Median	0.80675	0.97231	NaN	1	0	Median	0.78616	0.78344	31.786	2	0	Median	0.60802	0.64468	NaN	1	0	Median	186280000	109310000	76974000	8989400	3833400	5156000	79309000	42895000	36414000	61878000	40092000	21786000	36108000	22490000	13618000	45403	4442	42738	274924;274925;274926;274927;274928	368863;368864;368865;368866;368867	368864			5	
SGGGIVEPIPLNIK	1	Unmodified	1392.7977	0.79766537	3572	Q8N954	GPATCH11	G patch domain-containing protein 11	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		76.088	75.766	2	0.0067416	68927	160511_QHF_FH_JSI11i_1	52.247	38.869			0.36686	0.3502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36686	0.3502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39957000	30442000	9515200	0	0	0	0	0	0	39957000	30442000	9515200	0	0	0	45404	3572	42739	274929	368868	368868			1	
SGGGSGGSGGQVSLK	1	Unmodified	1233.5949	0.59494282	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	11.599	11.25	2	0.00011559	8955	160511_QHF_FH_JSI10i_1	111.31	94.082			0.6609	0.5489	60.944	5	4	Median	0.6609	0.5489	NaN	1	1	Median	0.27315	0.32678	NaN	1	1	Median	0.90934	0.87378	7.4544	2	1	Median	0.21074	0.22088	NaN	1	1	Median	682000000	471720000	210280000	98354000	67805000	30549000	129480000	107850000	21625000	298040000	164870000	133170000	156130000	131190000	24943000	45405	4771	42740	274930;274931;274932;274933;274934	368869;368870;368871;368872;368873	368872			5	
SGGGSGGSGGQVSLKK	2	Unmodified	1361.6899	0.68990583	4771	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			8.9952	8.4439	3	0.025764	6277	160511_QHF_FH_JSI10i_3	34.395	7.6883			1.1235	1.3307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1235	1.3307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19205000	10512000	8692600	0	0	0	19205000	10512000	8692600	0	0	0	0	0	0	45406	4771	42741	274935	368874	368874			1	
SGGGTGEEPGSQGLNGEAGPEDSTR	0	Unmodified	2345.0004	0.0003535287	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	3	1	2	27.903	27.249	2;3	4.8194E-191	24110	160511_QHF_FH_JSI10i_1	322.33	311.06			0.86774	0.97491	15.699	5	0	Median	1.46	1.2409	NaN	1	0	Median	0.8051	0.95398	12.304	2	0	Median	0.99711	0.97491	NaN	1	0	Median	0.80748	0.83326	NaN	1	0	Median	311590000	155700000	155880000	78169000	26386000	51783000	106190000	57093000	49101000	85682000	49483000	36199000	41543000	22743000	18800000	45407	279	42742	274936;274937;274938;274939;274940;274941;274942;274943;274944	368875;368876;368877;368878;368879;368880;368881;368882;368883;368884;368885;368886;368887	368880			13	
SGGGTGEEPGSQGLNGEAGPEDSTRETPSQENGPTAK	1	Unmodified	3584.5735	0.57349827	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	2									1			1	33.649	32.731	3	8.7752E-09	28657	160511_QHF_FH_JSI9i_1	54.326	52.296			1.4247	1.2887	58.275	2	2	Median	2.3896	1.9458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84938	0.85345	NaN	1	1	Median	45607000	24495000	21111000	18380000	5363800	13016000	0	0	0	0	0	0	27227000	19132000	8095300	45408	279	42743	274945;274946	368888;368889	368889			2	
SGGGVGDVLR	0	Unmodified	915.47739	0.47739386	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	35.1	25.781	2	0.052506	15555	160513_QHF_FH_JSI12Kac_4	48.423	28.787			1.1237	1.2237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1237	1.2237	NaN	1	1	Median	9975800	4579500	5396400	0	0	0	0	0	0	0	0	0	9975800	4579500	5396400	45409	2549	42744	274947	368890	368890			1	
SGGGYGGDR	0	Unmodified	824.34129	0.34129431	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	2	3	2	0.65408	0.36987	2	0.0049801	403	160511_QHF_FH_JSI10i_1	65.246	51.089			1.0273	0.85797	15.119	9	3	Median	1.0743	0.88339	4.1284	2	0	Median	0.67101	0.77803	2.8787	2	1	Median	1.1467	1.1192	7.5973	3	1	Median	0.78142	0.82078	2.5399	2	1	Median	403760000	217880000	185880000	21688000	11563000	10125000	112270000	70129000	42142000	182970000	87839000	95136000	86825000	48348000	38478000	45410	3889	42745	274948;274949;274950;274951;274952;274953;274954;274955;274956	368891;368892;368893;368894;368895;368896;368897;368898;368899	368898			9	
SGGGYIVVDPILR	0	Unmodified	1344.7402	0.74015049	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.306	73.44	2	0.00075766	63393	160511_QHF_FH_JSI12i_2	80.979	60.676			0.80965	0.8992	21.537	4	2	Median	1.3234	1.1595	NaN	1	0	Median	0.75498	0.92475	NaN	1	0	Median	0.86827	0.87436	NaN	1	1	Median	0.63779	0.6863	NaN	1	1	Median	162720000	92172000	70546000	31346000	14062000	17283000	31678000	18470000	13208000	59619000	34360000	25259000	40075000	25279000	14796000	45411	1435	42746	274957;274958;274959;274960	368900;368901;368902	368900			3	
SGGIETIANEYSDR	0	Unmodified	1510.69	0.68996541	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	2	3	3	49.867	49.062	2	6.7695E-08	42967	160511_QHF_FH_JSI9i_2	169.89	153.22			0.93683	1.0468	14.542	9	5	Median	1.6409	1.4244	NaN	1	0	Median	0.87491	1.0564	5.6897	2	0	Median	1.0788	1.0793	5.6295	3	2	Median	0.80394	1.028	14.019	3	3	Plateau	881330000	434250000	447080000	78337000	32637000	45700000	183300000	92621000	90677000	397010000	185850000	211160000	222680000	123140000	99545000	45412	723	42747	274961;274962;274963;274964;274965;274966;274967;274968;274969	368903;368904;368905;368906;368907;368908;368909;368910;368911;368912;368913;368914;368915	368912			13	
SGGIPALVR	0	Unmodified	868.51305	0.51305109	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									2	1	42.411	41.49	2	0.0031076	36304	160511_QHF_FH_JSI11i_3	60.682	31.532			1.3253	1.4193	36.467	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0767	1.0967	NaN	1	1	Median	1.6312	1.8367	NaN	1	1	Median	282680000	132630000	150050000	0	0	0	0	0	0	126260000	68537000	57719000	156420000	64091000	92328000	45413	1065	42748	274970;274971;274972	368916;368917;368918	368916			3	
SGGLGGSHALLLLR	0	Unmodified	1349.7779	0.77793298	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	64.844	59.258	2;3	1.1644E-82	32411	160513_QHF_FH_JSI10Kac_6	225.13	198.42			0.90479	1.0018	27.036	14	0	Median	1.4591	1.2285	14.509	4	0	Median	0.85279	0.99883	8.9031	4	0	Median	1.0721	0.99586	20.695	3	0	Median	0.80305	0.85621	36.956	3	0	Median	2584400000	1306600000	1277900000	644300000	266750000	377540000	1222100000	654250000	567820000	459970000	236850000	223120000	258100000	148730000	109380000	45414	1544	42749	274973;274974;274975;274976;274977;274978;274979;274980;274981;274982;274983;274984;274985;274986	368919;368920;368921;368922;368923;368924;368925;368926;368927;368928;368929;368930;368931;368932;368933;368934;368935;368936;368937;368938;368939;368940	368940			22	
SGGLLKALR	1	Acetyl (K);Acetyl (Protein N-term)	997.59203	0.59202969	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	1	1	0	1			By MS/MS		14	0							1					1		82.521	71.863	2	0.0082554	37805	160513_QHF_FH_JSI11Kac_4	51.854	27.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45415	1768	42750	274987	368941	368941	1785		1	
SGGLPLVLSMLTR	0	Unmodified	1342.7643	0.76425675	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		88.758	88.256	2	0.021524	77740	160511_QHF_FH_JSI9i_2	42.001	14.886			0.70751	0.65862	2.6542	2	0	Median	0.75541	0.64638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66264	0.6711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	277730000	158370000	119360000	111510000	63365000	48147000	0	0	0	166220000	95008000	71213000	0	0	0	45416	3921	42751	274988;274989	368942;368943	368942			2	
SGGMERPFVLAR	0	Unmodified	1318.6816	0.68158975	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1		By MS/MS	By matching		2	0		2									1	1		42.159	41.439	3	0.02617	36536	160511_QHF_FH_JSI10i_2	34.386	14.376			1.1866	1.3394	32.655	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86078	1.0632	NaN	1	0	Median	1.6357	1.6873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134880000	60974000	73904000	0	0	0	100100000	48150000	51954000	34774000	12824000	21950000	0	0	0	45417	2569	42752	274990;274991	368944	368944			1	
SGGMSNELNNIISR	0	Unmodified	1490.7147	0.71474038	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.88	5	4	6					3		4	4	4	6	62.243	59.738	2	1.58E-81	51634	160511_QHF_FH_JSI11i_2	251.24	233.37			0.96235	0.97799	24.399	17	7	Median	1.5034	1.2601	23.01	3	0	Median	0.79474	0.96011	14.3	4	2	Median	1.0172	1.0061	15.544	4	1	Median	0.71377	0.79154	23.206	6	4	Median	3619500000	1854700000	1764800000	600310000	246770000	353540000	806040000	460030000	346000000	1150400000	560860000	589540000	1062700000	587040000	475690000	45418	1798	42753	274992;274993;274994;274995;274996;274997;274998;274999;275000;275001;275002;275003;275004;275005;275006;275007;275008;275009	368945;368946;368947;368948;368949;368950;368951;368952;368953;368954;368955;368956;368957;368958;368959;368960;368961;368962;368963;368964;368965;368966;368967;368968;368969;368970	368964			26	
SGGMSNELNNIISR	0	Oxidation (M)	1506.7097	0.709655	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	46.469	45.52	2	0.0023259	40056	160511_QHF_FH_JSI10i_2	64.65	56.43			0.77864	0.81548	5.7838	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83468	0.84952	NaN	1	1	Median	0.72636	0.7828	NaN	1	1	Median	37772000	21356000	16416000	0	0	0	0	0	0	23385000	11218000	12167000	14387000	10138000	4248700	45419	1798	42753	275010;275011;275012;275013;275014	368971;368972;368973;368974;368975	368975		1480	5	
SGGNLEVMGLMLGK	1	Unmodified	1404.7105	0.71050662	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	86.486	85.918	2	2.3258E-65	76349	160511_QHF_FH_JSI10i_2	226.04	205.04			1.072	1.0956	17.837	5	1	Median	1.3344	1.173	NaN	1	0	Median	0.90145	1.0956	NaN	1	0	Median	1.072	1.0888	NaN	1	0	Median	1.0822	1.1834	34.646	2	1	Median	546750000	292950000	253810000	130090000	60630000	69455000	122220000	72258000	49963000	180470000	94425000	86050000	113970000	65632000	48341000	45420	3905	42754	275015;275016;275017;275018;275019;275020	368976;368977;368978;368979;368980;368981;368982;368983;368984;368985;368986;368987	368985			12	
SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK	1	Unmodified	3011.2302	0.2302469	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		27.236	26.419	3	1.152E-16	22300	160511_QHF_FH_JSI11i_3	87.206	84.428			0.99923	1.1727	40.574	4	2	Median	2.6147	2.2271	NaN	1	1	Median	0.99923	1.1727	5.7019	2	0	Median	0.9061	0.84871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93793000	38609000	55184000	24828000	4454000	20374000	56514000	29340000	27173000	12452000	4814200	7637400	0	0	0	45421	2325	42755	275021;275022;275023;275024	368988;368989;368990;368991	368988			4	
SGGSADYNR	0	Acetyl (Protein N-term)	967.39954	0.39953747	2519	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		9.3853	1.8839	2	0.038433	2777	160513_QHF_FH_JSI11Kac_1	31.934	31.934			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45422	2519	42756	275025	368992	368992			1	
SGGSSCSQTPSR	0	Acetyl (Protein N-term)	1251.515	0.51497794	2435	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	1	0	0			By MS/MS	By MS/MS	7.67	4.71	1			2								2	1	7.584	2.535	2	2.5569E-05	4588	160511_QHF_FH_JSI11i_1	166.19	160.82			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45423	2435	42757	275026;275027;275028	368993;368994;368995	368993			3	
SGGSSQVYFMTLGR	0	Oxidation (M)	1504.698	0.69802768	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	59.596	48.871	2	0.00092613	25851	160513_QHF_FH_JSI9Kac_5	75.819	69.13			1.0563	1.1286	20.669	4	0	Median	1.4793	1.2209	NaN	1	0	Median	0.9205	1.0625	NaN	1	0	Median	1.212	1.1987	NaN	1	0	Median	0.73319	0.78081	NaN	1	0	Median	10147000	5312400	4834700	2070200	998380	1071900	3070700	1928800	1141900	2970400	1210700	1759700	2035800	1174500	861240	45424	733	42758	275029;275030;275031;275032	368996;368997;368998	368996		252	3	
SGGSSQVYFMTLGR	0	Unmodified	1488.7031	0.70311306	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.6	0.49								2	3	2	2	1		72.635	63.318	2	5.3613E-37	34317	160513_QHF_FH_JSI11Kac_6	182.1	174.29			1.1127	1.117	12.394	5	1	Median	1.5157	1.2783	4.3313	2	1	Median	0.85889	1.0181	8.601	2	0	Median	1.1127	1.117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94554000	45248000	49305000	20426000	6924600	13502000	38614000	22362000	16252000	35514000	15962000	19552000	0	0	0	45425	733	42758	275033;275034;275035;275036;275037	368999;369000;369001;369002;369003;369004	369000			6	
SGGSSQVYFMTLNR	0	Unmodified	1545.7246	0.72457678	3526	Q8N4C8	MINK1	Misshapen-like kinase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		68.571	59.436	2	0.0049808	32215	160513_QHF_FH_JSI11Kac_6	79.633	15.083			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45426	3526	42759	275038;275039	369005;369006	369005			2	
SGGTALHVAAAK	1	Unmodified	1081.588	0.58800695	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		3	9						3	5	3	5	2	14.962	12.778	2;3	7.9841E-16	10845	160511_QHF_FH_JSI10i_2	158.79	133.65			1.1003	1.1011	21.606	14	1	Median	1.7273	1.4527	23.528	4	1	Median	0.9613	1.1038	24.458	3	0	Median	1.0672	1.0168	9.6118	5	0	Median	1.0995	1.1133	13.821	2	0	Median	1858700000	903260000	955450000	113360000	40606000	72754000	174730000	81377000	93356000	638300000	255340000	382960000	932320000	525940000	406380000	45427	227	42760	275040;275041;275042;275043;275044;275045;275046;275047;275048;275049;275050;275051;275052;275053;275054	369007;369008;369009;369010;369011;369012;369013;369014;369015;369016;369017;369018;369019;369020;369021;369022;369023;369024;369025;369026;369027;369028	369021			22	
SGGTEGLLAEK	1	Unmodified	1060.5401	0.5400537	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	3	1	30.145	27.514	2	6.1346E-06	24149	160511_QHF_FH_JSI11i_1	110.39	84.828			0.74821	0.80353	13.234	4	1	Median	NaN	NaN	NaN	0	0	Median	0.78552	0.92572	NaN	1	0	Median	0.78215	0.77207	15.611	2	1	Median	0.71268	0.74888	NaN	1	0	Median	456030000	243490000	212540000	0	0	0	145270000	75922000	69347000	172410000	93666000	78746000	138350000	73902000	64444000	45428	5295	42761	275055;275056;275057;275058;275059;275060	369029;369030;369031;369032;369033;369034;369035	369029			7	
SGGTYFLISR	0	Unmodified	1099.5662	0.56620887	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			62.025	53.66	2	0.00021017	45088	160511_QHF_FH_JSI10i_3	92.538	79.161			0.95638	1.1023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95638	1.1023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57933000	28525000	29408000	0	0	0	57933000	28525000	29408000	0	0	0	0	0	0	45429	1841	42762	275061;275062	369036;369037	369036			2	
SGGVGGSNTNWK	1	Unmodified	1162.5367	0.53669966	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		16.599	16.121	2	5.3836E-05	13567	160511_QHF_FH_JSI10i_1	109.16	85.001			1.0832	1.0983	20.349	3	2	Median	1.0832	0.90501	NaN	1	0	Median	0.94708	1.0983	NaN	1	1	Median	1.4082	1.3594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	214040000	102860000	111180000	33158000	10550000	22608000	103150000	58713000	44433000	77741000	33602000	44139000	0	0	0	45430	1293	42763	275063;275064;275065	369038;369039;369040	369039			2	
SGGVNQYVVQEVLSIK	1	Unmodified	1718.9203	0.9202997	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	2	1	91.923	91.527	2	3.8561E-10	81171	160511_QHF_FH_JSI10i_2	187.97	170.53			0.88998	0.88437	20.855	7	5	Median	1.2569	1.0872	2.8581	2	2	Median	0.63197	0.7526	22.818	2	1	Median	0.91559	0.90385	6.0727	2	2	Median	0.60071	0.68081	NaN	1	0	Median	348850000	184500000	164350000	98029000	42569000	55460000	75669000	46497000	29172000	120280000	63453000	56825000	54873000	31981000	22892000	45431	2605	42764	275066;275067;275068;275069;275070;275071;275072	369041;369042;369043;369044;369045;369046;369047	369047			7	
SGGVYGGDEVGALVFDIGSYTVR	0	Acetyl (Protein N-term)	2359.1332	0.1332056	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				102.77	102.61	3	6.3806E-08	90797	160511_QHF_FH_JSI9i_1	90.534	87.568			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45432	758	42765	275073	369048	369048			1	
SGHIQTLLR	0	Unmodified	1023.5825	0.58252764	5570	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							3	1			25.065	24.105	2;3	0.00016615	19338	160511_QHF_FH_JSI9i_3	72.643	42.079			1.5008	1.5179	1.9488	2	1	Median	1.8111	1.539	NaN	1	0	Median	1.2437	1.4972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76862000	33163000	43698000	34426000	11265000	23160000	42436000	21898000	20538000	0	0	0	0	0	0	45433	5570	42766	275074;275075;275076;275077	369049;369050;369051;369052	369049			4	
SGHLTTKPTQSK	2	Unmodified	1283.6834	0.68336389	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			5.4815	4.9834	2;3;4	0.0012214	2990	160511_QHF_FH_JSI9i_3	81.865	62.078			0.88709	0.72474	26.472	5	1	Median	1.0655	0.87814	26.246	3	0	Median	0.55756	0.66004	13.226	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	382320000	196070000	186250000	227710000	91339000	136370000	154610000	104730000	49880000	0	0	0	0	0	0	45434	2621	42767	275078;275079;275080;275081;275082	369053;369054;369055;369056	369055			4	
SGHTLLAFWFSR	0	Unmodified	1420.7252	0.72516913	4854	Q9HCD6	TANC2	Protein TANC2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.472	77.846	3	8.2422E-06	43296	160513_QHF_FH_JSI10Kac_6	73.466	56.247			0.98483	1.1588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98483	1.1588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23667000	10317000	13350000	0	0	0	23667000	10317000	13350000	0	0	0	0	0	0	45435	4854	42768	275083	369057;369058	369057			2	
SGHTNNWAVLVCTSR	0	Unmodified	1700.8053	0.80528672	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			56.782	48.271	3	0.0061048	26590	160513_QHF_FH_JSI10Kac_6	37.583	32.374			0.9036	1.0761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9036	1.0761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17346000	8774900	8571400	0	0	0	17346000	8774900	8571400	0	0	0	0	0	0	45436	3867	42769	275084	369059;369060	369059			2	
SGIALSR	0	Acetyl (Protein N-term)	744.413	0.41300269	2063	P63279	UBE2I	SUMO-conjugating enzyme UBC9	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	33.582	32.908	1;2	0.0014278	29678	160511_QHF_FH_JSI11i_1	108	49.751			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45437	2063	42770	275085;275086;275087;275088;275089	369061;369062;369063;369064;369065;369066;369067	369062			7	
SGIDFGSLLK	1	Unmodified	1035.5601	0.56006086	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	81.796	79.064	2	0.0070337	70877	160511_QHF_FH_JSI11i_2	63.184	41.098			1.0438	1.039	18.366	5	0	Median	1.367	1.1676	NaN	1	0	Median	0.80259	0.99218	NaN	1	0	Median	1.1128	1.0878	6.4831	2	0	Median	0.67208	0.73772	NaN	1	0	Median	135780000	70850000	64927000	29882000	13161000	16721000	29331000	16066000	13265000	45664000	22747000	22917000	30901000	18877000	12024000	45438	292	42771	275090;275091;275092;275093;275094	369068;369069;369070;369071	369070			4	
SGIDITDFQAK	1	Unmodified	1193.5928	0.59281755	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	2	2	60.847	58.129	2	5.8563E-06	52705	160511_QHF_FH_JSI11i_1	110.53	82.521			1.0467	1.0328	20.311	5	0	Median	1.3591	1.1208	NaN	1	0	Median	0.86926	1.0328	NaN	1	0	Median	1.0993	1.073	6.026	2	0	Median	0.66299	0.68891	NaN	1	0	Median	693950000	340550000	353390000	188820000	87823000	100990000	175080000	89561000	85515000	194150000	92361000	101790000	135900000	70809000	65096000	45439	1684	42772	275095;275096;275097;275098;275099;275100	369072;369073;369074;369075;369076;369077;369078;369079	369072			8	
SGIFLWTK	1	Unmodified	950.52255	0.52255314	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	77.439	69.032	2	0.0011926	37511	160513_QHF_FH_JSI11Kac_6	101.54	86.103			1.0441	1.0848	26.38	4	0	Median	1.4825	1.2481	NaN	1	0	Median	0.90682	1.068	NaN	1	0	Median	1.2023	1.1018	NaN	1	0	Median	0.62766	0.68249	NaN	1	0	Median	153980000	70072000	83910000	31593000	12321000	19273000	48197000	24448000	23749000	57130000	23039000	34091000	17061000	10265000	6796100	45440	3000	42773	275101;275102;275103;275104;275105;275106	369080;369081;369082;369083;369084;369085;369086	369082			7	
SGILPILVK	1	Unmodified	938.61645	0.61645353	147	O00505	KPNA3	Importin subunit alpha-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	76.804	75.996	2	0.0007018	67532	160511_QHF_FH_JSI11i_3	75.738	70.883			1.0088	1.03	14.736	8	1	Median	1.3807	1.1575	18.029	2	1	Median	0.8541	1.0198	2.9365	2	0	Median	1.1791	1.1285	6.3621	2	0	Median	0.8297	0.87342	12.899	2	0	Median	519950000	260870000	259080000	99813000	38146000	61667000	123260000	70860000	52401000	185910000	91044000	94864000	110970000	60823000	50143000	45441	147	42774	275107;275108;275109;275110;275111;275112;275113;275114	369087;369088;369089;369090;369091;369092;369093;369094;369095;369096	369087			9	
SGINPFDSQEAK	1	Unmodified	1291.6044	0.60444487	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	45.449	41.345	2	2.1432E-07	36844	160511_QHF_FH_JSI10i_1	132.17	99.953			1.105	1.0927	18.315	5	0	Median	1.3429	1.0887	NaN	1	0	Median	0.94451	1.118	NaN	1	0	Median	1.2595	1.2218	15.793	2	0	Median	0.75594	0.81749	NaN	1	0	Median	1253300000	636800000	616500000	395640000	189010000	206630000	406870000	208090000	198780000	449010000	238520000	210490000	1775100	1184000	591120	45442	1943	42775	275115;275116;275117;275118;275119	369097;369098;369099;369100;369101;369102;369103;369104	369102			8	
SGIPISWYR	0	Unmodified	1077.5607	0.56072956	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	64.147	63.55	2	0.012834	56312	160511_QHF_FH_JSI11i_3	47.198	22.275			1.0078	1.1287	19.173	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0078	1.1287	NaN	1	0	Median	1.4488	1.3176	NaN	1	0	Median	0.91027	0.89998	NaN	1	0	Median	104330000	46494000	57837000	0	0	0	21699000	11192000	10508000	39425000	13271000	26153000	43208000	22031000	21177000	45443	3230	42776	275120;275121;275122	369105;369106;369107	369105			3	
SGIVQYLQK	1	Unmodified	1034.576	0.57604528	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.632	47.779	2	6.3471E-05	42295	160511_QHF_FH_JSI11i_3	96.948	76.001			0.99017	0.78851	25.112	4	1	Linear	1.5668	1.2749	NaN	1	1	Median	0.95554	1.1581	NaN	1	0	Median	1.0261	0.96582	NaN	1	0	Median	0.72519	0.72031	NaN	1	0	Median	443180000	221280000	221900000	80742000	33576000	47166000	86000000	43758000	42242000	122410000	57393000	65021000	154020000	86557000	67466000	45444	5142	42777	275123;275124;275125;275126	369108;369109;369110;369111;369112;369113;369114;369115	369110			8	
SGIYETR	0	Unmodified	824.40283	0.40283194	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	11.626	11.127	2	0.043439	8584	160511_QHF_FH_JSI11i_2	45.68	30.241			0.95287	1.1881	34.416	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95287	1.1881	NaN	1	0	Median	1.2022	1.1933	NaN	1	0	Median	0.58706	0.65603	NaN	1	0	Median	367830000	190500000	177330000	0	0	0	103420000	51212000	52210000	144870000	65953000	78914000	119540000	73332000	46211000	45445	4017	42778	275127;275128;275129	369116;369117	369117			2	
SGKFMNPTDQAR	1	Acetyl (K)	1392.6456	0.64559818	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.831						3	3	4		1	3	3	3	44.916	35.081	2	5.4159E-19	20295	160513_QHF_FH_JSI12Kac_4	155.99	140.4			0.91499	0.98995	66.622	8	1	Median	NaN	NaN	NaN	0	0	Median	0.69549	0.82777	0.89441	2	0	Median	1.6172	1.6026	71.235	3	1	Plateau	0.80102	0.87003	12.234	3	0	Plateau	241130000	118880000	122250000	839700	839700	0	73227000	42611000	30615000	100040000	40108000	59934000	67020000	35320000	31700000	45446	5543	42779	275130;275131;275132;275133;275134;275135;275136;275137;275138;275139	369118;369119;369120;369121;369122;369123;369124;369125;369126;369127;369128;369129;369130;369131;369132;369133	369128	3484		16	
SGKFMNPTDQAR	1	Acetyl (K);Oxidation (M)	1408.6405	0.6405128	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	0.484						5	3			1	2	3	2	33.107	22.997	2	7.0491E-19	5798	160513_QHF_FH_JSI9Kac_3	147.24	128.93			1.0546	0.99313	30.775	8	0	Median	1.2489	1.0105	NaN	1	0	Median	0.72739	0.86356	1.4323	2	0	Median	1.6511	1.6163	17.355	3	0	Median	0.85653	0.93143	6.6168	2	0	Median	137480000	68859000	68616000	39484000	17984000	21500000	27019000	16080000	10939000	29642000	11681000	17961000	41330000	23114000	18216000	45447	5543	42779	275140;275141;275142;275143;275144;275145;275146;275147	369134;369135;369136;369137;369138;369139;369140;369141;369142;369143;369144;369145;369146	369140	3484	2692	13	
SGKFMNPTDQARK	2	Acetyl (K)	1520.7406	0.7405612	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.497								4	5	2	3	2	2	37.607	28.194	2;3	5.5336E-05	15846	160513_QHF_FH_JSI10Kac_6	91.441	78.304			1.0746	1.0627	30.061	8	0	Median	1.2833	1.0973	10.394	2	0	Median	0.85506	1.023	5.1296	2	0	Median	1.6935	1.6436	49.475	2	0	Median	0.88039	0.9592	14.747	2	0	Median	182740000	86400000	96340000	28572000	12150000	16423000	60946000	31802000	29144000	55969000	21697000	34272000	37254000	20752000	16502000	45448	5543	42780	275148;275149;275150;275151;275152;275153;275154;275155;275156	369147;369148;369149;369150;369151;369152;369153;369154;369155	369154	3484		9	
SGKFTQQDIDEAK	2	Acetyl (K)	1507.7155	0.71545188	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	46.655	37.486	2	6.3899E-05	20644	160513_QHF_FH_JSI12Kac_3	92.925	73.654			0.87997	1.0495	25.016	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89784	1.063	NaN	1	0	Median	0.68352	0.6447	NaN	1	0	Median	0.76311	0.83937	NaN	1	0	Median	8496600	4672600	3824000	0	0	0	3102800	1863000	1239800	2535800	1166800	1369100	2857900	1642800	1215100	45449	2900	42781	275157;275158;275159	369156;369157;369158;369159;369160;369161	369159	2709		6	
SGKHKNKEK	4	3 Acetyl (K)	1180.62	0.62003536	1851	P55201	BRPF1	Peregrin	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	14.8	0.373							1	5			2	2	2	6.7671	-2.7496	2;3	0.003195	2326	160513_QHF_FH_JSI11Kac_5	56.936	39.072			0.88006	1.0423	39.854	6	0	Median	NaN	NaN	NaN	0	0	Median	0.88006	1.0423	11.838	2	0	Median	1.5869	1.5323	5.6803	2	0	Median	0.58411	0.64214	13.15	2	0	Median	29993000	15287000	14706000	0	0	0	5601800	3307900	2293900	15252000	6340600	8911600	9139400	5638600	3500800	45450	1851	42782	275160;275161;275162;275163;275164;275165	369162;369163;369164;369165	369163	1863;1864;1865		4	
SGKNSQEDSEDSEDK	2	Acetyl (K)	1695.6707	0.67074611	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	1	0	0	1				By MS/MS	11.5	0.5				1	1								2	7.7465	0.38884	2	0.0018611	2329	160513_QHF_FH_JSI12Kacf_1	73.848	57.594			0.63268	0.68411	32.091	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63268	0.68411	32.091	2	0	Median	3992000	1962800	2029300	0	0	0	0	0	0	0	0	0	3992000	1962800	2029300	45451	4657	42783	275166;275167	369166;369167;369168;369169	369167	3211		4	
SGKPAELLK	2	Unmodified	941.55458	0.55458155	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.33	1	6	7				1	4	4	4	8	7	4	20.066	15.779	2;3	0.0002202	12566	160511_QHF_FH_JSI12i_3	81.017	33.819			0.83867	0.95509	33.478	19	3	Median	1.1826	0.93787	8.4671	4	0	Linear	0.82111	0.96036	30.137	6	1	Median	0.85237	0.82236	50.836	5	2	Median	0.60337	0.62513	17.601	4	0	Median	20192000000	10519000000	9674000000	2080300000	721760000	1358500000	1704900000	989450000	715410000	6236200000	3251000000	2985200000	10171000000	5556300000	4614900000	45452	1322	42784	275168;275169;275170;275171;275172;275173;275174;275175;275176;275177;275178;275179;275180;275181;275182;275183;275184;275185;275186;275187;275188;275189;275190	369170;369171;369172;369173;369174;369175;369176;369177;369178;369179;369180;369181;369182;369183;369184;369185;369186;369187;369188;369189;369190;369191;369192;369193;369194;369195;369196;369197;369198;369199	369193			30	
SGKPPLQNNEK	2	Unmodified	1210.6306	0.63060004	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.54	5.65		2	7					4		2	5	3	3	7.5182	4.4255	2;3	2.4536E-07	4627	160511_QHF_FH_JSI10i_3	103.46	82.232			0.88857	0.94118	30.456	13	1	Median	1.7753	1.4563	8.2506	2	0	Median	0.81659	0.94118	22.656	5	1	Median	0.9759	0.90616	5.2844	3	0	Plateau	0.65755	0.71327	19.688	3	0	Median	1612200000	874350000	737890000	36735000	9836500	26898000	488710000	282270000	206440000	642280000	320210000	322070000	444510000	262030000	182480000	45453	1304	42785	275191;275192;275193;275194;275195;275196;275197;275198;275199;275200;275201;275202;275203	369200;369201;369202;369203;369204;369205;369206;369207;369208;369209;369210;369211;369212	369203			13	
SGKVFPTGPSDWR	1	Acetyl (K)	1474.7205	0.72047768	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		72.218	61.544	2	0.010173	32906	160513_QHF_FH_JSI11Kac_5	57.019	50.33			0.94698	1.0347	18.161	2	1	Median	NaN	NaN	NaN	0	0	Median	0.97661	1.1765	NaN	1	1	Median	0.91824	0.90999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8165500	3915900	4249600	0	0	0	2387300	893730	1493500	5778200	3022200	2756100	0	0	0	45454	4257	42786	275204;275205	369213;369214;369215	369213	3090		3	
SGKWEGLVYAPPGK	2	Unmodified	1487.7773	0.77726428	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	52.403	51.68	2;3	0.00035779	42448	160511_QHF_FH_JSI9i_3	78.653	62.763			1.0268	0.98866	54.635	5	1	Median	2.0806	1.6794	NaN	1	1	Median	1.9731	2.3114	NaN	1	0	Median	1.0268	0.98866	NaN	1	0	Median	0.68964	0.68464	7.0413	2	0	Median	975850000	470100000	505750000	144740000	67413000	77325000	218860000	98151000	120710000	235300000	101040000	134260000	376960000	203500000	173460000	45455	5542	42787	275206;275207;275208;275209;275210;275211;275212	369216;369217;369218;369219;369220;369221;369222;369223;369224	369221			9	
SGKWEGLVYAPPGK	2	Acetyl (K)	1529.7878	0.78782897	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								6		1	2	2	1	77.025	66.497	2;3	7.3722E-12	35343	160513_QHF_FH_JSI11Kac_5	132.59	107.73			0.84468	0.80606	33.134	5	0	Median	NaN	NaN	NaN	0	0	Median	0.924	1.0978	0.43297	2	0	Median	0.80689	0.78472	3.7946	2	0	Median	0.44935	0.49072	NaN	1	0	Median	24939000	13596000	11343000	0	0	0	9946100	5197200	4748900	12485000	6553500	5931800	2507700	1845700	661960	45456	5542	42787	275213;275214;275215;275216;275217;275218	369225;369226;369227;369228;369229;369230;369231;369232	369227	3479		8	
SGKYDLDFK	2	Unmodified	1071.5237	0.52367535	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.79	3	11	15					4	6	8	10	11	10	37.042	33.69	2;3	6.5379E-05	29355	160511_QHF_FH_JSI9i_2	88.681	67.217			0.95079	1.0082	41.7	34	8	Median	1.2863	1.0872	17.356	7	2	Median	0.89955	1.0792	17.346	8	2	Median	1.0295	0.99356	53.132	9	2	Median	0.58316	0.61044	37.841	10	2	Median	37834000000	18932000000	18902000000	3934400000	1461600000	2472800000	5956600000	2777800000	3178800000	12833000000	6893300000	5939400000	15110000000	7799300000	7310600000	45457	854	42788	275219;275220;275221;275222;275223;275224;275225;275226;275227;275228;275229;275230;275231;275232;275233;275234;275235;275236;275237;275238;275239;275240;275241;275242;275243;275244;275245;275246;275247;275248;275249;275250;275251;275252;275253;275254;275255;275256;275257	369233;369234;369235;369236;369237;369238;369239;369240;369241;369242;369243;369244;369245;369246;369247;369248;369249;369250;369251;369252;369253;369254;369255;369256;369257;369258;369259;369260;369261;369262;369263;369264;369265;369266;369267;369268;369269;369270;369271;369272;369273;369274;369275;369276;369277;369278;369279;369280;369281;369282;369283;369284;369285;369286;369287;369288;369289;369290;369291;369292;369293;369294;369295;369296;369297;369298;369299;369300;369301;369302;369303;369304;369305;369306;369307;369308;369309;369310;369311;369312;369313;369314;369315;369316;369317;369318;369319;369320;369321	369280			89	
SGKYDLDFK	2	Acetyl (K)	1113.5342	0.53424004	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS		13.9	1.05						4	2	1	1	1	2	5		61.328	51.257	2	1.4769E-05	27393	160513_QHF_FH_JSI11Kac_3	113.93	92.626			0.8229	0.98028	107.31	7	4	Median	4.0413	4.9852	NaN	1	0	Median	0.87374	1.0402	8.385	2	1	Median	0.42725	0.41823	88.037	4	3	Median	NaN	NaN	NaN	0	0	Median	179000000	95367000	83632000	737310	246300	491000	42968000	20752000	22216000	135290000	74369000	60925000	0	0	0	45458	854	42788	275258;275259;275260;275261;275262;275263;275264;275265	369322;369323;369324;369325;369326;369327;369328	369324	527		7	
SGKYVLGYK	2	Acetyl (K)	1055.5651	0.56514624	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.988						2	3	4	2	1	4	4	2	51.613	41.524	2	0.00066068	23082	160513_QHF_FH_JSI11Kac_5	96.331	72.176			0.43508	0.47204	61.089	10	0	Median	1.1872	1.0028	NaN	1	0	Median	1.0183	1.2231	4.3335	3	0	Median	0.36383	0.35739	19.886	4	0	Median	0.43508	0.47204	3.6666	2	0	Median	332090000	226280000	105810000	14415000	7336500	7078500	66798000	39221000	27577000	205280000	148860000	56418000	45595000	30858000	14737000	45459	2033	42789	275266;275267;275268;275269;275270;275271;275272;275273;275274;275275;275276	369329;369330;369331;369332;369333;369334;369335;369336;369337;369338;369339;369340;369341;369342;369343;369344	369340	2073;2074		16	
SGKYYYQLNSK	2	Acetyl (K)	1391.6721	0.67213051	114	O00257	CBX4	E3 SUMO-protein ligase CBX4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.3	0.471							2	1				2	1	50.099	39.584	2	0.015306	23282	160513_QHF_FH_JSI11Kac_4	61.353	35.968			2.4406	2.3698	69.76	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6986	2.5871	12.409	2	1	Median	0.73545	0.78024	NaN	1	0	Median	5965600	1807300	4158300	0	0	0	0	0	0	4258500	886300	3372200	1707100	920980	786110	45460	114	42790	275277;275278;275279	369345;369346	369345	74		2	
SGLAESSSKFKPTQSSLTR	2	Acetyl (K)	2052.0487	0.048747692	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	55.89	45.232	3	0.013735	24954	160513_QHF_FH_JSI11Kac_5	49.224	32.344			0.99516	0.97228	41.667	4	0	Median	1.1292	0.96078	NaN	1	0	Median	0.98861	1.1748	NaN	1	0	Median	1.0017	0.98392	NaN	1	0	Median	0.43355	0.45895	NaN	1	0	Median	15774000	7558700	8215300	3711600	1565400	2146200	4547100	1968000	2579100	5304900	2669600	2635300	2210400	1355700	854700	45461	2584	42791	275280;275281;275282;275283	369347;369348;369349;369350	369348	2557;2558		4	
SGLDDINPTVLLK	1	Unmodified	1383.7609	0.76094551	1434	P35354	PTGS2	Prostaglandin G/H synthase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	87.69	87.134	2	0.0008538	79396	160511_QHF_FH_JSI11i_1	67.385	59.739			1.1336	0.91201	10.829	3	1	Median	1.1336	0.91201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1576	1.0915	NaN	1	0	Median	0.90491	0.89848	NaN	1	0	Median	50492000	21430000	29062000	12715000	6008200	6707200	0	0	0	23370000	7858500	15512000	14406000	7563500	6842800	45462	1434	42792	275284;275285;275286	369351;369352;369353	369351			3	
SGLDSVSSWLPLAK	1	Unmodified	1458.7718	0.77184455	3116	Q6PD74	AAGAB	Alpha- and gamma-adaptin-binding protein p34	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	95.997	95.663	2	8.822E-05	83998	160511_QHF_FH_JSI11i_2	114.86	92.221			0.79355	0.81198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79355	0.81198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23205000	12084000	11121000	0	0	0	0	0	0	23205000	12084000	11121000	0	0	0	45463	3116	42793	275287;275288	369354;369355	369355			2	
SGLELEPEEPPGWR	0	Unmodified	1594.7627	0.76273643	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3									3	2	2	68.387	67.704	2	2.8132E-07	59274	160511_QHF_FH_JSI11i_2	91.936	77.246			0.84572	1.0254	31.926	5	5	Median	NaN	NaN	NaN	0	0	Median	0.72402	0.84669	27.085	2	2	Median	1.118	1.0874	NaN	1	1	Median	0.7745	0.85056	53.4	2	2	Median	123630000	68687000	54938000	0	0	0	56767000	36731000	20036000	34241000	12500000	21741000	32617000	19456000	13161000	45464	3900	42794	275289;275290;275291;275292;275293;275294;275295	369356;369357;369358;369359;369360;369361;369362	369361			7	
SGLELLK	1	Unmodified	758.4538	0.45380487	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								2	1	2		45.311	44.485	2	0.025376	38065	160511_QHF_FH_JSI11i_2	54.611	5.8558			1.0027	0.98232	20.108	5	2	Median	1.2023	1.0369	37.529	2	1	Median	0.78422	0.95118	NaN	1	1	Median	1.0667	1.063	11.168	2	0	Median	NaN	NaN	NaN	0	0	Median	253320000	132500000	120820000	69672000	35429000	34243000	57685000	32517000	25168000	125960000	64558000	61406000	0	0	0	45465	2789	42795	275296;275297;275298;275299;275300	369363;369364;369365	369364			3	
SGLGELILPENEPGSSIMPGK	1	Unmodified	2124.0773	0.077270628	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.816	10	8	7							5	6	6	8	90.895	90.411	2;3	1.1107E-45	79598	160511_QHF_FH_JSI11i_2	202.13	178.9			1.0236	1.0223	19.509	23	2	Median	1.269	1.0739	4.8668	5	0	Median	0.84095	1.0223	27.221	5	0	Median	1.0577	1.0535	10.59	6	0	Median	0.78618	0.82826	19.748	7	2	Median	2919700000	1488200000	1431400000	477370000	207820000	269560000	742940000	411530000	331400000	900180000	422150000	478030000	799170000	446730000	352440000	45466	887	42796	275301;275302;275303;275304;275305;275306;275307;275308;275309;275310;275311;275312;275313;275314;275315;275316;275317;275318;275319;275320;275321;275322;275323;275324;275325	369366;369367;369368;369369;369370;369371;369372;369373;369374;369375;369376;369377;369378;369379;369380;369381;369382;369383;369384;369385;369386;369387;369388;369389;369390;369391;369392;369393;369394;369395;369396;369397;369398;369399;369400;369401;369402;369403;369404;369405;369406;369407;369408;369409;369410;369411;369412;369413;369414;369415;369416;369417;369418;369419;369420;369421;369422;369423;369424;369425;369426;369427;369428;369429;369430;369431;369432;369433;369434;369435;369436;369437;369438;369439;369440;369441;369442;369443;369444;369445;369446	369431			80	
SGLGELILPENEPGSSIMPGK	1	Oxidation (M)	2140.0722	0.07218525	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				81.441	80.586	3	0.011435	71688	160511_QHF_FH_JSI9i_1	35.036	24.182			0.70009	0.5814	NaN	1	1	Median	0.70009	0.5814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22475000	10768000	11707000	22475000	10768000	11707000	0	0	0	0	0	0	0	0	0	45467	887	42796	275326	369447	369447		449	1	
SGLGSGPK	1	Unmodified	701.3708	0.37080353	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.37	3	4	3			2	2	5	2	4	6	7	4	7.6254	3.2774	2	0.00030189	3252	160513_QHF_FH_JSI11Kac_4	116.37	55.611			1.0604	1.0612	41.581	20	1	Median	1.6131	1.322	23.661	4	0	Linear	0.86032	1.0321	21.36	6	0	Median	1.1353	1.1225	51.371	6	1	Median	0.74136	0.813	61.327	4	0	Median	10925000000	5613900000	5310800000	1732000000	746820000	985190000	3423400000	1747600000	1675700000	3718700000	1825600000	1893000000	2050600000	1293800000	756820000	45468	214	42797	275327;275328;275329;275330;275331;275332;275333;275334;275335;275336;275337;275338;275339;275340;275341;275342;275343;275344;275345;275346;275347	369448;369449;369450;369451;369452;369453;369454;369455;369456;369457;369458;369459;369460;369461;369462;369463;369464;369465;369466;369467;369468;369469;369470	369457			23	
SGLIFYR	0	Unmodified	854.46504	0.46503826	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.34		1	3					2	4	2	3	2	3	56.217	50.046	2	7.9214E-08	27194	160513_QHF_FH_JSI11Kac_6	144.29	116.98			1.5655	1.3235	39.774	10	4	Median	1.5655	1.3235	4.3751	2	0	Median	0.9534	1.133	52.902	3	1	Median	1.5454	1.4677	59.01	2	1	Median	1.804	1.8013	50.097	3	2	Plateau	3587600000	1266200000	2321500000	179720000	70121000	109600000	1128300000	459140000	669120000	909330000	323890000	585440000	1370300000	413000000	957300000	45469	1415	42798	275348;275349;275350;275351;275352;275353;275354;275355;275356;275357	369471;369472;369473;369474;369475;369476;369477;369478;369479;369480;369481;369482;369483	369476			13	
SGLIFYRK	1	Unmodified	982.56	0.56000128	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	45.531	36.28	2;3	0.00037901	19296	160513_QHF_FH_JSI9Kac_6	94.302	69.38			0.85519	0.94674	24.972	8	0	Median	1.399	1.1993	5.4186	2	0	Median	0.80693	0.96094	1.9468	2	0	Median	0.93045	0.90957	5.5072	2	0	Median	0.58467	0.62916	1.2881	2	0	Median	610350000	274480000	335880000	190730000	64273000	126460000	330150000	164810000	165330000	47011000	23063000	23947000	42462000	22324000	20138000	45470	1415	42799	275358;275359;275360;275361;275362;275363;275364;275365	369484;369485;369486;369487;369488;369489;369490;369491;369492	369487			8	
SGLIVPYASNLIFVLYHCENAK	1	Unmodified	2507.2883	0.28826646	5449	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	96.408	87.081	3	5.4019E-09	49470	160513_QHF_FH_JSI11Kac_6	144.22	109.18			0.92339	0.99957	17.338	4	4	Linear	1.336	1.1449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92338	0.86717	0.8902	2	2	Median	1.1353	1.1937	NaN	1	1	Median	1015500000	503360000	512100000	72777000	31201000	41577000	0	0	0	747630000	392390000	355240000	195060000	79768000	115290000	45471	5449	42800	275366;275367;275368;275369	369493;369494;369495;369496	369494			4	
SGLKYINVGDLAR	1	Acetyl (K)	1446.7831	0.78307794	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		80.072	69.59	2	0.01161	36882	160513_QHF_FH_JSI11Kac_5	55.452	37.184			0.51565	0.54749	6.8759	2	0	Median	NaN	NaN	NaN	0	0	Median	0.44991	0.5215	NaN	1	0	Median	0.591	0.57476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10209000	6819900	3388800	0	0	0	3037000	2275800	761170	7171700	4544100	2627600	0	0	0	45472	5590	42801	275370;275371	369497	369497	3490		1	
SGLLGFVGPGSLVFVVGK	1	Unmodified	1731.9923	0.99234243	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	1	2	98.116	91.383	2	1.6293E-55	52913	160513_QHF_FH_JSI10Kac_6	189.3	167.1			0.89871	0.8523	25.679	5	1	Median	1.2413	1.0526	NaN	1	0	Median	0.89913	1.0506	NaN	1	0	Median	0.89871	0.8523	NaN	1	0	Median	0.65465	0.68566	28.428	2	1	Median	821240000	452290000	368940000	124520000	51205000	73318000	195890000	113110000	82783000	229990000	121000000	108990000	270830000	166990000	103850000	45473	5202	42802	275372;275373;275374;275375;275376;275377	369498;369499;369500;369501;369502;369503;369504;369505;369506;369507	369506			10	
SGLLLWQLLMAPK	1	Unmodified	1468.8476	0.84759245	5623	Q9Y4D8	HECTD4	Probable E3 ubiquitin-protein ligase HECTD4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.011	89.932	2	1.3289E-31	50981	160513_QHF_FH_JSI9Kac_6	177.76	154.84			0.87885	1.3281	23.464	3	0	Plateau	1.5154	1.3281	NaN	1	0	Median	0.8057	0.92888	NaN	1	0	Median	1.5035	1.4452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	376990000	178120000	198860000	80199000	24958000	55242000	180350000	101060000	79291000	116440000	52109000	64332000	0	0	0	45474	5623	42803	275378;275379;275380	369508;369509;369510;369511	369510			4	
SGLLVLTTPLASLAPR	0	Unmodified	1607.961	0.9610423	2346	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	1	2		93.478	85.121	2	2.0852E-23	47704	160513_QHF_FH_JSI9Kac_6	153.75	108.99			0.97095	1.025	25.703	4	2	Median	1.5971	1.3636	NaN	1	0	Median	0.98432	1.1409	NaN	1	0	Median	0.87067	0.83353	14.081	2	2	Median	NaN	NaN	NaN	0	0	Median	416840000	215060000	201780000	61722000	22903000	38819000	108180000	56221000	51963000	246940000	135940000	111000000	0	0	0	45475	2346	42804	275381;275382;275383;275384	369512;369513;369514;369515;369516;369517	369515			6	
SGLNIAHFK	1	Unmodified	985.53451	0.53451481	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	2	2	2	36.354	35.643	2;3	9.5388E-05	30894	160511_QHF_FH_JSI11i_3	81.338	57.909			0.84896	0.93823	24.454	8	4	Median	1.1354	0.9606	3.4688	2	1	Median	0.84896	0.96379	3.6638	2	1	Median	0.65837	0.60955	5.8524	2	1	Median	0.77203	0.7863	36.2	2	1	Median	1352800000	706180000	646620000	75034000	34824000	40210000	191780000	89556000	102230000	469910000	246340000	223570000	616070000	335460000	280610000	45476	2771	42805	275385;275386;275387;275388;275389;275390;275391;275392	369518;369519;369520;369521;369522;369523;369524;369525;369526;369527	369518			10	
SGLNQGAISTLQSSDILNLTK	1	Unmodified	2159.1434	0.14337636	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			91.486	91.02	3	0.01648	80812	160511_QHF_FH_JSI10i_2	29.84	23.533			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45477	5409	42806	275393	369528	369528			1	
SGLPDLILGK	1	Unmodified	1011.5964	0.59644637	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	76.945	76.079	2	0.011428	67684	160511_QHF_FH_JSI10i_2	46.462	37.549			1.2631	1.271	15.848	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75868	0.92766	NaN	1	0	Median	1.2631	1.271	NaN	1	0	Median	0.96419	1.0523	NaN	1	0	Median	62698000	28124000	34574000	0	0	0	18790000	10649000	8141700	24998000	8949900	16048000	18910000	8525600	10384000	45478	1537	42807	275394;275395;275396	369529;369530	369530			2	
SGLPNFLAVALALGELGYR	0	Unmodified	1960.0782	0.078197327	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	100.86	92.423	2;3	1.5959E-121	52916	160513_QHF_FH_JSI9Kac_6	251.26	221.32			0.91823	1.0443	49.868	8	1	Median	1.4988	1.3036	5.3684	2	0	Median	0.91539	1.092	1.0157	2	0	Median	0.98239	0.93913	9.6945	2	0	Median	0.43608	0.46602	71.439	2	1	Median	2634000000	1345900000	1288100000	672120000	272180000	399950000	1400200000	749880000	650370000	493020000	266450000	226570000	68641000	57394000	11246000	45479	3167	42808	275397;275398;275399;275400;275401;275402;275403;275404	369531;369532;369533;369534;369535;369536;369537;369538;369539;369540;369541;369542	369535			12	
SGLPVGPENGVELSK	1	Unmodified	1481.7726	0.77257283	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	57.129	56.478	2	1.0937E-06	50128	160511_QHF_FH_JSI9i_1	129.71	111.44			1.0046	1.0414	13.435	7	6	Median	1.4607	1.1963	9.1194	2	2	Median	0.82295	0.96112	11.351	2	2	Median	1.0684	1.0517	8.7053	2	2	Median	0.82697	0.88062	NaN	1	0	Median	1652100000	800750000	851350000	443220000	175030000	268200000	479170000	247130000	232040000	475760000	241930000	233830000	253950000	136670000	117280000	45480	899	42809	275405;275406;275407;275408;275409;275410;275411	369543;369544;369545;369546;369547;369548;369549;369550	369550			8	
SGLQGYDMSTFIR	0	Unmodified	1473.6922	0.69221402	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.93	3							4		1	3	2	1	77.687	69.259	2	5.4212E-12	34114	160513_QHF_FH_JSI10Kac_5	121.02	111.69			0.96396	0.94327	20.185	5	1	Median	1.4596	1.2425	NaN	1	0	Median	0.87979	1.0368	18.89	2	1	Median	0.96396	0.94327	NaN	1	0	Median	0.70151	0.76119	NaN	1	0	Median	66388000	34980000	31408000	3794700	1567000	2227700	46391000	25141000	21250000	13335000	6408300	6926300	2867200	1863700	1003400	45481	2425	42810	275412;275413;275414;275415;275416;275417;275418	369551;369552;369553;369554;369555;369556;369557;369558;369559;369560	369560			10	
SGLQGYDMSTFIR	0	Oxidation (M)	1489.6871	0.68712864	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	64.302	53.568	2	0.033565	27111	160513_QHF_FH_JSI12Kac_5	38.783	22.892			0.72521	0.79271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72521	0.79271	NaN	1	0	Median	1492800	896220	596570	0	0	0	0	0	0	0	0	0	1492800	896220	596570	45482	2425	42810	275419	369561	369561			1	
SGLQTDYATEK	1	Unmodified	1211.567	0.56699673	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		31.221	22.575	2	0.042556	13732	160513_QHF_FH_JSI11Kac_3	49.35	28.48			3.1132	2.9278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1132	2.9278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2576100	706010	1870100	0	0	0	0	0	0	2576100	706010	1870100	0	0	0	45483	1576	42811	275420	369562	369562			1	
SGLSDIILGK	1	Unmodified	1001.5757	0.57571092	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	69.773	68.882	2	7.0678E-05	61159	160511_QHF_FH_JSI10i_2	89.08	73.929			0.99848	1.0855	23.185	4	0	Median	1.3966	1.1947	NaN	1	0	Median	1.0014	1.2178	NaN	1	0	Median	0.99559	0.98618	NaN	1	0	Median	0.68547	0.73905	NaN	1	0	Median	147490000	72955000	74539000	23588000	11324000	12264000	36235000	13791000	22444000	43886000	21653000	22232000	43785000	26186000	17599000	45484	5230	42812	275421;275422;275423;275424	369563;369564;369565	369565			2	
SGLSSPIYIDLR	0	Unmodified	1319.7085	0.70851601	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15.5	0.5								1	1		1	1		77.915	69.446	2	0.00030013	36979	160513_QHF_FH_JSI11Kac_5	87.913	62.527			0.83823	0.89361	17.67	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68974	0.78865	NaN	1	0	Median	1.0187	1.0125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88032000	54099000	33933000	0	0	0	84273000	51928000	32346000	3758400	2171000	1587400	0	0	0	45485	989	42813	275425;275426	369566;369567	369566			2	
SGLTEVYQWYLDLRR	0	Unmodified	1897.9686	0.96864688	4121	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			88.516	82.798	3	0.010174	46843	160513_QHF_FH_JSI10Kac_6	48.823	42.406			1.1962	1.3796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1962	1.3796	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180200000	79975000	100230000	0	0	0	180200000	79975000	100230000	0	0	0	0	0	0	45486	4121	42814	275427	369568	369568			0	
SGLTGLVIGGLYPVFLAIPVNGGLAAR	0	Unmodified	2624.5054	0.50539352	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									7	2	2	2	1	100.13	91.835	2;3	1.1276E-226	55425	160513_QHF_FH_JSI10Kac_6	305.4	281.56			1.1208	1.2539	24.74	7	0	Median	1.8295	1.5598	23.367	2	0	Median	1.1275	1.3487	10.308	2	0	Median	1.1158	1.0505	0.029669	2	0	Median	0.80853	0.86683	NaN	1	0	Median	3785900000	1697800000	2088100000	712620000	258000000	454620000	879180000	419990000	459200000	2151500000	996230000	1155200000	42660000	23617000	19042000	45487	4617	42815	275428;275429;275430;275431;275432;275433;275434	369569;369570;369571;369572	369571			4	
SGLTGYIK	1	Unmodified	837.45962	0.45961853	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0			By MS/MS		14.5	0.5							1	1				2		45.519	35.184	2	0.030292	19821	160513_QHF_FH_JSI11Kac_5	49.097	16.742			1.4006	1.3609	41.283	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4006	1.3609	41.283	2	0	Median	NaN	NaN	NaN	0	0	Median	5831300	3141300	2690000	0	0	0	0	0	0	5831300	3141300	2690000	0	0	0	45488	5295	42816	275435;275436	369573	369573			1	
SGLTVPTSPK	1	Unmodified	985.54441	0.5444108	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	5.72	5	1	1			3	1			3	3	3	2	36.944	32.761	2	5.1275E-05	28522	160511_QHF_FH_JSI9i_1	92.732	56.521			1.1729	1.176	16.072	10	4	Median	1.4335	1.1971	0.33559	2	1	Median	0.98525	1.1509	19.546	3	2	Median	1.2008	1.1579	24.674	3	1	Median	1.1005	1.185	7.8368	2	0	Median	1180300000	564840000	615430000	232230000	87572000	144660000	342780000	182850000	159930000	343030000	161820000	181210000	262220000	132590000	129630000	45489	2846	42817	275437;275438;275439;275440;275441;275442;275443;275444;275445;275446;275447	369574;369575;369576;369577;369578;369579;369580;369581;369582;369583;369584;369585	369581			12	
SGLVLGQR	0	Acetyl (Protein N-term)	870.49232	0.49231565	4985	Q9NSK0	KLC4	Kinesin light chain 4	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	48.881	48.218	2	0.0041323	43783	160511_QHF_FH_JSI12i_1	60.648	11.058			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45490	4985	42818	275448	369586	369586			1	
SGLVPQQIK	1	Unmodified	968.56548	0.56548059	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	1	2	35.901	33.839	2	0.00058578	30178	160511_QHF_FH_JSI11i_1	77.923	47.737			0.80501	1.0086	15.096	7	3	Linear	1.1137	0.93039	5.3317	2	1	Median	0.73438	0.87751	9.2951	2	1	Median	1.0705	1.0569	NaN	1	0	Median	0.68744	0.72514	10.926	2	1	Median	1436800000	761660000	675120000	339430000	154130000	185300000	511000000	286510000	224490000	407180000	213740000	193430000	179170000	107280000	71893000	45491	2147	42819	275449;275450;275451;275452;275453;275454;275455	369587;369588;369589;369590;369591;369592;369593;369594;369595;369596	369588			10	
SGMFWLR	0	Unmodified	895.43744	0.4374433	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	2	2	2	70.617	65.171	2	0.0013177	34533	160513_QHF_FH_JSI9Kac_6	108.98	58.863			0.82106	0.95872	23.946	7	1	Median	1.4587	1.2212	20.137	2	0	Median	0.80518	0.95815	0.084417	2	0	Median	1.0356	0.98691	NaN	1	1	Median	0.68386	0.73219	20.086	2	0	Median	547720000	284940000	262780000	138970000	56446000	82528000	262560000	143350000	119200000	50645000	26064000	24581000	95546000	59082000	36464000	45492	1379	42820	275456;275457;275458;275459;275460;275461;275462;275463	369597;369598;369599;369600;369601;369602;369603;369604	369601			8	
SGMFWLRF	0	Unmodified	1042.5059	0.50585722	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	89.032	80.74	2	0.0035443	44550	160513_QHF_FH_JSI9Kac_6	107.32	97.96			1.2716	1.3803	22.746	4	0	Median	1.9283	1.6566	NaN	1	0	Median	1.1033	1.3271	NaN	1	0	Median	1.4655	1.4356	NaN	1	0	Median	0.92045	0.96742	NaN	1	0	Median	462320000	201670000	260640000	53313000	18493000	34820000	299500000	131020000	168480000	39650000	17371000	22279000	69849000	34787000	35062000	45493	1379	42821	275464;275465;275466;275467	369605;369606;369607;369608	369605			4	
SGMIEYWTGPPHEYK	1	Unmodified	1793.8083	0.80830641	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				61.11	60.138	3	0.027818	52851	160511_QHF_FH_JSI9i_2	34.191	24.134			9.726	8.2544	NaN	1	1	Median	9.726	8.2544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39390000	5571600	33818000	39390000	5571600	33818000	0	0	0	0	0	0	0	0	0	45494	3989	42822	275468	369609	369609			1	
SGMLQAEK	1	Unmodified	862.42185	0.42185282	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.852	13.629	2	0.0090129	10742	160511_QHF_FH_JSI11i_2	56.432	25.142			0.73268	0.74201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73268	0.74201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110220000	56372000	53850000	0	0	0	0	0	0	110220000	56372000	53850000	0	0	0	45495	1016	42823	275469	369610	369610			1	
SGMNVAR	0	Unmodified	733.35411	0.35410761	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.13	1	4	3				1	4		2	4	4	3	8.8848	4.3151	2	9.8562E-14	5494	160511_QHF_FH_JSI11i_3	151.17	59.589			0.96261	1.0263	22.344	11	0	Median	1.3803	1.1859	3.2024	2	0	Median	0.88648	1.0628	28.274	4	0	Median	1.0659	1.0509	8.5081	3	0	Plateau	0.71642	0.77853	2.2551	2	0	Median	23762000000	11505000000	12257000000	4599300000	1806500000	2792800000	5755100000	3003200000	2752000000	9136300000	4412900000	4723300000	4271300000	2282100000	1989200000	45496	1055	42824	275470;275471;275472;275473;275474;275475;275476;275477;275478;275479;275480;275481;275482	369611;369612;369613;369614;369615;369616;369617;369618;369619;369620;369621;369622;369623;369624	369611			14	
SGMNVAR	0	Oxidation (M)	749.34902	0.34902223	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	8.1787	7.7467	2	0.013115	5453	160511_QHF_FH_JSI11i_2	82.305	39.831			1.0159	1.0267	24.312	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2023	1.4747	NaN	1	0	Median	1.0159	1.0267	NaN	1	0	Median	0.8436	0.92896	NaN	1	0	Median	3379800000	1742700000	1637100000	0	0	0	819510000	407280000	412230000	1497400000	709610000	787820000	1062900000	625820000	437050000	45497	1055	42824	275483;275484;275485	369625;369626	369626		683	2	
SGMSHEEDQLIPNLYR	0	Unmodified	1887.8785	0.87851124	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	1	3	62.438	61.447	2;3	2.7304E-35	54289	160511_QHF_FH_JSI10i_2	159.64	143.01			1.066	1.3186	57.473	5	3	Median	3.0193	2.6062	NaN	1	0	Median	1.066	1.3186	NaN	1	1	Median	1.4663	1.4487	NaN	1	0	Median	0.63548	0.69769	29.554	2	2	Median	303890000	152850000	151040000	58787000	16950000	41837000	101390000	53876000	47511000	26436000	11132000	15304000	117280000	70890000	46388000	45498	3101	42825	275486;275487;275488;275489;275490;275491;275492	369627;369628;369629;369630;369631;369632;369633;369634;369635	369635			9	
SGMSPEQSR	0	Unmodified	977.42364	0.42364373	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.9312	6.5954	2	0.00093088	4467	160511_QHF_FH_JSI10i_1	71.425	58.159			1.0018	1.0749	21.748	4	0	Median	1.4759	1.2305	NaN	1	0	Median	0.8245	0.97328	NaN	1	0	Median	1.2173	1.1872	NaN	1	0	Median	0.7289	0.76673	NaN	1	0	Median	571420000	292090000	279330000	143740000	55250000	88495000	143560000	84842000	58718000	126500000	53830000	72667000	157620000	98164000	59453000	45499	5474	42826	275493;275494;275495;275496	369636;369637;369638;369639;369640;369641	369640			6	
SGMVQTEAQYR	0	Unmodified	1268.5819	0.58193529	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									1	1	3	21.827	21.558	2	0.00068695	18973	160511_QHF_FH_JSI12i_1	73.841	59.003			1.1521	1.3403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1521	1.3403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49931000	28672000	21258000	0	0	0	49931000	28672000	21258000	0	0	0	0	0	0	45500	2239	42827	275497;275498;275499;275500;275501	369642;369643;369644;369645;369646	369644			5	
SGMYTVAMAYCGSGNNK	1	Unmodified	1809.7484	0.74842505	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		60.416	51.341	2;3	1.1737E-09	28345	160513_QHF_FH_JSI10Kac_6	165.7	148.67			0.99895	1.153	60.26	5	3	Median	1.9663	1.6959	NaN	1	1	Median	1.6388	1.9114	71.486	2	1	Median	0.78343	0.77883	22.067	2	1	Median	NaN	NaN	NaN	0	0	Median	43550000	22764000	20786000	4599000	1507600	3091400	20549000	10229000	10320000	18403000	11028000	7374200	0	0	0	45501	4272	42828	275502;275503;275504;275505;275506	369647;369648;369649;369650;369651;369652	369652			6	
SGMYVVIEVK	1	Oxidation (M)	1139.5896	0.58964643	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	58.08	48.202	2	0.0016079	25274	160513_QHF_FH_JSI12Kac_6	76.465	71.5			0.55464	0.61131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55464	0.61131	NaN	1	0	Median	8053100	4641400	3411700	0	0	0	0	0	0	0	0	0	8053100	4641400	3411700	45502	494	42829	275507;275508	369653;369654;369655	369655		184	3	
SGNALFHASTLHR	0	Unmodified	1409.7164	0.71639536	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	35.11	27.607	3;4	3.465E-06	15110	160513_QHF_FH_JSI9Kac_6	82.55	77.701			0.98235	1.0803	23.148	10	1	Median	1.4391	1.2432	9.4222	3	0	Median	0.95436	1.1211	31.267	3	1	Plateau	1.0638	1.0441	11.39	2	0	Median	0.77554	0.84875	7.7171	2	0	Median	160470000	81734000	78735000	65143000	28532000	36611000	68303000	39430000	28874000	17066000	8720900	8344800	9956500	5051200	4905300	45503	2502	42830	275509;275510;275511;275512;275513;275514;275515;275516;275517;275518	369656;369657;369658;369659;369660;369661;369662;369663;369664;369665;369666;369667;369668	369663			13	
SGNELPLAVASTADLIR	0	Unmodified	1725.9261	0.92611336	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.209	91.149	2	0.00026545	82732	160511_QHF_FH_JSI10i_1	83.087	65.72			0.7119	0.76265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7119	0.76265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9760500	5621100	4139400	0	0	0	9760500	5621100	4139400	0	0	0	0	0	0	45504	5639	42831	275519	369669	369669			1	
SGNFGGSR	0	Unmodified	780.35147	0.35146507	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.55	3	4	3				3	4	3	3	5	6	6	5.3832	1.0756	2	2.3942E-06	2902	160511_QHF_FH_JSI9i_2	143.73	90.213			1.0383	1.097	24.527	20	1	Median	1.3546	1.13	4.6149	3	0	Median	0.91494	1.0792	11.26	5	0	Median	1.1316	1.1198	8.944	6	1	Median	0.65123	0.68685	30.003	6	0	Median	12943000000	6468000000	6474600000	2061800000	778680000	1283100000	2230800000	1208900000	1021900000	4688700000	2088700000	2600000000	3961200000	2391700000	1569500000	45505	1212	42832	275520;275521;275522;275523;275524;275525;275526;275527;275528;275529;275530;275531;275532;275533;275534;275535;275536;275537;275538;275539	369670;369671;369672;369673;369674;369675;369676;369677;369678;369679;369680;369681;369682;369683;369684;369685;369686;369687;369688;369689;369690;369691;369692;369693;369694;369695;369696;369697	369682			28	
SGNGNAAATAEENSPK	1	Acetyl (Protein N-term)	1558.6859	0.68594267	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				20.954	19.796	2	4.8136E-12	16749	160511_QHF_FH_JSI9i_1	112.44	105.74			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45506	901	42833	275540	369698	369698			1	
SGNIINMSSVASSVK	1	Unmodified	1492.7555	0.75554256	4452	Q9BUT1	BDH2	3-hydroxybutyrate dehydrogenase type 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		61.336	60.651	2	5.0591E-05	52733	160511_QHF_FH_JSI11i_2	78.373	52.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45507	4452	42834	275541;275542	369699;369700	369699			2	
SGNILLHK	1	Unmodified	880.51305	0.51305109	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	17.842	17.861	2;3	0.021698	14588	160511_QHF_FH_JSI12i_3	36.334	13.594			0.34128	0.33845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34128	0.33845	NaN	1	1	Median	174640000	90000000	84641000	0	0	0	0	0	0	21725000	0	21725000	152920000	90000000	62917000	45508	3221	42835	275543;275544	369701;369702	369702			2	
SGNIPAGTTVDTK	1	Unmodified	1259.6357	0.635745	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	22.829	22.52	2	0.00070224	19592	160511_QHF_FH_JSI10i_1	68.515	51.079			0.70354	0.81912	18.341	3	0	Median	NaN	NaN	NaN	0	0	Median	0.70354	0.81912	NaN	1	0	Median	0.999	0.97369	NaN	1	0	Median	0.65615	0.67483	NaN	1	0	Median	175360000	103140000	72218000	0	0	0	50462000	30617000	19844000	53088000	24610000	28478000	71810000	47915000	23895000	45509	5381	42836	275545;275546;275547	369703;369704;369705;369706;369707	369707			5	
SGNIVAGIANESK	1	Unmodified	1258.6517	0.65172941	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.17	5	4				2	1			3	3	2	4	42.415	39.348	2	6.9098E-06	35707	160511_QHF_FH_JSI12i_1	128.57	116.36			0.83512	0.88977	28.407	12	6	Median	1.2876	1.1007	30.787	3	2	Median	0.72123	0.86138	23.792	3	2	Median	0.91866	0.9115	2.0738	2	0	Median	0.66333	0.72292	28.495	4	2	Median	1000800000	547450000	453360000	232130000	103130000	129000000	249800000	143240000	106560000	121730000	62443000	59289000	397140000	238630000	158510000	45510	1693	42837	275548;275549;275550;275551;275552;275553;275554;275555;275556;275557;275558;275559	369708;369709;369710;369711;369712;369713;369714;369715;369716;369717;369718;369719;369720;369721;369722;369723;369724	369712			17	
SGNIVAGIANESKK	2	Unmodified	1386.7467	0.74669243	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	32.779	32.732	2;3	0.00010965	28413	160511_QHF_FH_JSI11i_3	72.187	55.788			0.61443	0.58638	30.56	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61443	0.58638	25.772	2	1	Median	0.57872	0.59679	46.2	2	1	Median	332300000	196710000	135600000	0	0	0	0	0	0	126580000	76157000	50423000	205720000	120550000	85173000	45511	1693	42838	275560;275561;275562;275563	369725;369726;369727	369725			3	
SGNLLHWWTEASYSR	0	Unmodified	1805.8485	0.84853174	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	78.709	70.955	3	0.0026114	37091	160513_QHF_FH_JSI12Kac_6	59.872	43.187			1.096	1.2464	15.482	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1622	1.3906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0335	1.1171	NaN	1	1	Median	148050000	64062000	83991000	0	0	0	122800000	52874000	69923000	0	0	0	25256000	11188000	14067000	45512	714	42839	275564;275565	369728;369729	369728			2	
SGNLTEDDK	1	Unmodified	977.43017	0.4301689	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	7.8439	5.2153	2	6.1953E-24	4741	160511_QHF_FH_JSI9i_1	196.37	137.59			0.82517	0.92555	30.48	6	0	Median	1.7219	1.3836	NaN	1	0	Median	0.82301	0.9738	NaN	1	0	Median	1.1191	1.1041	45.11	2	0	Median	0.73184	0.78935	15.323	2	0	Median	5603000000	2627100000	2975800000	1276400000	432660000	843760000	1684400000	842590000	841770000	1455700000	667330000	788350000	1186500000	684560000	501940000	45513	1039	42840	275566;275567;275568;275569;275570;275571	369730;369731;369732;369733;369734;369735;369736;369737	369736			8	
SGNLTEDDKHNNAK	2	Acetyl (K)	1583.7176	0.71757715	1039	P13797	PLS3	Plastin-3	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			13.887	3.8951	3	0.0052991	5318	160513_QHF_FH_JSI10Kac_4	46.408	41.694			1.038	1.2303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.038	1.2303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4089900	1709300	2380500	0	0	0	4089900	1709300	2380500	0	0	0	0	0	0	45514	1039	42841	275572	369738	369738	868;870		1	
SGNMIQSANDK	1	Unmodified	1163.5241	0.52408606	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			12.759	12.521	2	0.0024626	10208	160511_QHF_FH_JSI10i_1	60.691	42.827			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45515	3266	42842	275573	369739	369739			1	
SGNQVSEFISNTFLDK	1	Unmodified	1784.8581	0.85809337	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	92.227	92.205	3	9.8221E-06	80077	160511_QHF_FH_JSI12i_3	96.773	84.391			0.61814	0.60828	13.175	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71403	0.66767	NaN	1	0	Median	0.53512	0.55417	NaN	1	0	Median	63136000	41574000	21562000	0	0	0	0	0	0	38064000	25744000	12321000	25072000	15831000	9241600	45516	2273	42843	275574;275575	369740;369741	369741			2	
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	Unmodified	3336.5106	0.51056785	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	71.214	70.648	3;4	1.2006E-38	62910	160511_QHF_FH_JSI11i_3	143.79	142			1.0131	1.1302	23.059	6	1	Median	1.7174	1.4511	NaN	1	1	Median	1.0131	1.2047	6.1507	2	0	Median	1.0841	0.99972	14.483	2	0	Median	0.67885	0.76588	NaN	1	0	Median	519910000	251620000	268290000	40762000	11539000	29222000	118110000	55775000	62332000	289510000	138660000	150850000	71534000	45646000	25888000	45517	1002	42844	275576;275577;275578;275579;275580;275581	369742;369743;369744;369745;369746;369747;369748;369749;369750;369751;369752	369744			11	
SGNSDVYENEIPGGQYTNLHFQAHSMGLGSK	1	Oxidation (M)	3352.5055	0.50548247	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		63.404	63.404	4	0.00021115	56463	160511_QHF_FH_JSI11i_3	41.734	39.624			1.2153	1.1511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2153	1.1511	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25457000	8470800	16986000	0	0	0	0	0	0	25457000	8470800	16986000	0	0	0	45518	1002	42844	275582	369753	369753		581	1	
SGNTGIATTFINK	1	Unmodified	1322.683	0.68302954	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	50.172	48.947	2	0.00023948	42908	160511_QHF_FH_JSI9i_2	102.66	92.138			0.32906	0.32828	18.51	2	2	Median	0.31869	0.28801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33975	0.37419	NaN	1	1	Median	66881000	47038000	19843000	47044000	33091000	13953000	0	0	0	0	0	0	19836000	13947000	5889200	45519	5347	42845	275583;275584	369754;369755	369755			2	
SGNVAELALK	1	Unmodified	1000.5553	0.55530983	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	44.238	41.215	2	3.6528E-06	37397	160511_QHF_FH_JSI12i_1	110.39	78.453			0.62317	0.68939	41.142	9	3	Median	0.74144	0.61426	74.118	2	1	Median	0.58323	0.68939	49.87	3	1	Median	0.90741	0.8917	32	2	0	Median	0.60484	0.66261	1.3143	2	1	Median	4022900000	2638600000	1384200000	980130000	596150000	383980000	1463100000	1052300000	410810000	747580000	443120000	304450000	832040000	547040000	285000000	45520	1649	42846	275585;275586;275587;275588;275589;275590;275591;275592;275593;275594	369756;369757;369758;369759;369760;369761;369762;369763;369764;369765;369766;369767;369768	369759			13	
SGNYFFLDD	0	Unmodified	1076.4451	0.44509068	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	81.35	80.841	2	0.0069532	73543	160511_QHF_FH_JSI10i_1	53.968	48.98			0.92517	0.97916	38.813	3	0	Plateau	1.3203	1.0658	NaN	1	0	Median	0.64827	0.75502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49896	0.49118	NaN	1	0	Median	47385000	25768000	21617000	18905000	9583900	9321200	16992000	10080000	6911100	0	0	0	11488000	6103700	5384200	45521	1945	42847	275595;275596;275597	369769;369770	369770			2	
SGPASTFNDR	0	Unmodified	1050.473	0.47303677	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	2	3	3	15.643	13.706	2	1.6999E-07	11084	160511_QHF_FH_JSI11i_2	118.71	94.739			0.93568	0.93458	11.671	10	2	Median	1.3407	1.1234	0.94358	2	1	Median	0.77948	0.92846	0.59023	2	1	Median	0.93382	0.92335	2.422	3	0	Plateau	0.77615	0.84393	12.424	3	0	Median	831200000	452140000	379070000	166820000	76567000	90251000	223320000	134890000	88433000	239790000	127320000	112480000	201270000	113370000	87904000	45522	5215	42848	275598;275599;275600;275601;275602;275603;275604;275605;275606;275607	369771;369772;369773;369774;369775;369776;369777;369778;369779;369780;369781;369782;369783;369784	369782			14	
SGPASTFNDRVFASELNAGIIK	1	Unmodified	2293.1703	0.17025981	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			82.492	81.413	3	0.00015567	66996	160511_QHF_FH_JSI9i_3	56.529	35.131			1.2759	1.2636	3.7639	3	1	Plateau	1.5705	1.325	3.6514	2	1	Median	1.0459	1.2636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162700000	71977000	90719000	73378000	31522000	41857000	89317000	40455000	48863000	0	0	0	0	0	0	45523	5215	42849	275608;275609;275610;275611	369785;369786;369787;369788	369787			4	
SGPEAPEWYQVELK	1	Unmodified	1631.7831	0.78313752	3747	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.486	69.941	2	2.0988E-06	63744	160511_QHF_FH_JSI12i_1	129.84	105.49			0.78822	0.74889	3.8266	4	2	Median	0.90409	0.74117	NaN	1	0	Median	0.63049	0.7471	NaN	1	1	Median	0.86724	0.80508	NaN	1	1	Median	0.71639	0.75068	NaN	1	0	Median	302510000	172310000	130190000	61934000	26157000	35777000	94885000	61593000	33292000	68722000	36396000	32326000	76966000	48169000	28798000	45524	3747	42850	275612;275613;275614;275615	369789;369790;369791;369792;369793	369790			5	
SGPEPLQEGPGPK	1	Unmodified	1291.6408	0.64083038	1894	P57737	CORO7	Coronin-7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				27.385	26.117	2	0.0016554	22611	160511_QHF_FH_JSI9i_1	72.652	60.605			0.33956	0.27626	NaN	1	1	Median	0.33956	0.27626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55631000	38293000	17338000	55631000	38293000	17338000	0	0	0	0	0	0	0	0	0	45525	1894	42851	275616	369794	369794			1	
SGPEYASFFAVMGASAAMVFSALGAAYGTAK	1	Unmodified	3029.4303	0.4303156	1290	P27449	ATP6V0C	V-type proton ATPase 16 kDa proteolipid subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	5.59		2		1	1				5	3	4	1	1	105.06	98.247	3;4	6.968E-92	55313	160513_QHF_FH_JSI9Kac_6	211.94	203.54			1.4336	1.3507	40.473	9	2	Median	1.4591	1.2336	25.623	3	1	Median	1.4657	1.7074	41.686	4	1	Median	1.4004	1.3507	NaN	1	0	Median	0.59641	0.64058	NaN	1	0	Median	541490000	292740000	248750000	144380000	60290000	84087000	317960000	190420000	127540000	22528000	10591000	11937000	56626000	31438000	25188000	45526	1290	42852	275617;275618;275619;275620;275621;275622;275623;275624;275625	369795;369796;369797;369798;369799;369800;369801;369802;369803;369804;369805;369806;369807;369808;369809	369802			15	
SGPEYASFFAVMGASAAMVFSALGAAYGTAK	1	Oxidation (M)	3045.4252	0.42523022	1290	P27449	ATP6V0C	V-type proton ATPase 16 kDa proteolipid subunit	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		102.7	93.397	3	1.1685E-19	53577	160513_QHF_FH_JSI11Kac_6	139.93	128.62			1.8198	1.6642	0.98609	2	2	Median	1.9574	1.6527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6919	1.6759	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61310000	14219000	47092000	57274000	13043000	44231000	0	0	0	4036100	1175200	2860900	0	0	0	45527	1290	42852	275626;275627	369810;369811	369810		927	2	
SGPFAPVLSATSR	0	Unmodified	1288.6776	0.67755023	1611	P47985;P0C7P4	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	58.859	57.929	2	0.00031628	51172	160511_QHF_FH_JSI11i_3	72.817	57.556			0.80783	0.75146	33.135	7	1	Median	0.92242	0.77581	24.581	2	0	Median	1.0849	1.281	12.697	2	0	Median	0.80783	0.75146	NaN	1	0	Median	0.58245	0.61659	10.033	2	1	Median	547130000	298270000	248860000	148370000	89180000	59193000	185500000	91110000	94386000	98290000	53893000	44396000	114970000	64086000	50881000	45528	1611	42853	275628;275629;275630;275631;275632;275633;275634	369812;369813;369814;369815;369816;369817;369818;369819;369820;369821;369822;369823;369824;369825;369826;369827;369828;369829	369813			18	
SGPFGQIFRPDNFVFGQSGAGNNWAK	1	Unmodified	2797.3361	0.33609636	2075;872;2477;811	P07437;P68371;Q13885;Q9BVA1;P04350	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	1	3	2	1	93.692	88.924	3	1.8374E-272	44244	160513_QHF_FH_JSI9Kac_6	335.49	320.55			0.85951	0.84977	20.506	7	0	Median	1.1898	1.0132	NaN	1	0	Median	0.85951	1.0292	31.381	3	0	Plateau	0.91031	0.85779	7.8903	2	0	Median	0.7701	0.82388	NaN	1	0	Median	1433500000	753600000	679930000	491520000	222380000	269140000	646100000	343960000	302140000	133000000	77234000	55767000	162910000	110020000	52891000	45529	872;2075;2477;811	42854	275635;275636;275637;275638;275639;275640;275641	369830;369831;369832;369833;369834;369835;369836;369837;369838;369839;369840;369841;369842;369843;369844	369840			15	
SGPFGQLFRPDNFIFGQTGAGNNWAK	1	Unmodified	2825.3674	0.36739649	4440	Q9BUF5	TUBB6	Tubulin beta-6 chain	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			91.033	85.312	3	3.6333E-44	48612	160513_QHF_FH_JSI10Kac_6	174.98	162.78			0.69278	0.79144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69278	0.79144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112690000	65647000	47048000	0	0	0	112690000	65647000	47048000	0	0	0	0	0	0	45530	4440	42855	275642	369845;369846	369846			2	
SGPGLIGLGIK	1	Unmodified	1010.6124	0.61243078	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	64.589	63.769	2	0.0012102	56575	160511_QHF_FH_JSI11i_3	65.305	25.304			1.0283	1.0654	11.401	4	0	Linear	1.0223	0.8063	NaN	1	0	Median	0.8482	0.97765	NaN	1	0	Median	1.0544	0.99465	NaN	1	0	Median	1.0344	1.0455	NaN	1	0	Median	332400000	171120000	161280000	30323000	18834000	11488000	52602000	31119000	21483000	109480000	50173000	59310000	139990000	70995000	68999000	45531	3117	42856	275643;275644;275645;275646	369847;369848;369849	369847			3	
SGPGSQLNTK	1	Unmodified	987.49852	0.49852324	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	10.061	9.5091	2	0.016098	7211	160511_QHF_FH_JSI10i_1	44.863	18.969		+	0.86856	0.79716	5.5767	2	0	Median	1.0238	0.82923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73687	0.76634	NaN	1	0	Median	90737000	46798000	43939000	42403000	20622000	21781000	0	0	0	0	0	0	48334000	26176000	22158000	45532	2711	42857	275647;275648;275649	369850;369851	369851			2	
SGPIFIVVPNGK	1	Unmodified	1226.7023	0.70230842	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	1	2	78.464	67.835	2	0.00164	35916	160513_QHF_FH_JSI10Kac_4	73.985	60.632			1.0165	1.0975	23.555	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78651	0.92912	NaN	1	0	Median	1.3137	1.2964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9718200	5602400	4115800	0	0	0	6418300	3843200	2575100	3299800	1759200	1540700	0	0	0	45533	2485	42858	275650;275651;275652;275653	369852;369853;369854;369855;369856;369857	369852			6	
SGPKPFSAPK	2	Acetyl (K)	1056.5604	0.56039521	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	2	1	42.548	32.893	2	0.00031527	19607	160513_QHF_FH_JSI11Kac_4	94.309	67.925			0.53154	0.57552	44.538	5	0	Median	NaN	NaN	NaN	0	0	Median	0.85505	1.0068	3.6415	2	0	Median	0.42412	0.41603	0.57811	2	0	Median	0.53154	0.57552	NaN	1	0	Median	43332000	29248000	14084000	0	0	0	10421000	6404800	4016100	26186000	18214000	7972300	6724700	4628700	2096000	45534	2169	42859	275654;275655;275656;275657;275658	369858;369859;369860;369861	369859	2289		4	
SGPLFNFDVHDDVR	0	Unmodified	1616.7583	0.75831975	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	68.556	68.075	2;3	4.5517E-08	58866	160511_QHF_FH_JSI12i_3	121.31	114.02			0.92601	0.91081	18.324	7	0	Median	1.4782	1.3106	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99171	0.91081	9.8352	3	0	Median	0.92601	0.94549	13.857	3	0	Plateau	780790000	393730000	387060000	48412000	19927000	28486000	0	0	0	383000000	191920000	191080000	349380000	181890000	167490000	45535	2529	42860	275659;275660;275661;275662;275663;275664;275665	369862;369863;369864;369865;369866;369867;369868	369867			7	
SGPNIYELR	0	Unmodified	1047.5349	0.53490874	500	O75323	GBAS	Protein NipSnap homolog 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	42.64	41.712	2	0.0011948	35822	160511_QHF_FH_JSI11i_2	79.16	48.906			1.7372	1.8362	45.854	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3133	1.3277	NaN	1	1	Median	2.298	2.5394	NaN	1	1	Median	419220000	133690000	285530000	0	0	0	0	0	0	218780000	75195000	143580000	200450000	58496000	141950000	45536	500	42861	275666;275667	369869;369870	369870			2	
SGPNTQNEDIEK	1	Unmodified	1330.6001	0.60008777	2566	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	12.599	12.281	2	0.00027787	9963	160511_QHF_FH_JSI10i_1	91.313	71.527			0.71914	0.78284	45.054	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95514	1.0765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54145	0.56926	NaN	1	0	Median	63830000	34380000	29451000	0	0	0	33850000	15576000	18274000	0	0	0	29980000	18804000	11176000	45537	2566	42862	275668;275669	369871	369871			1	
SGPPAPEEEEEEERQSGNTEQK	1	Unmodified	2456.0575	0.057534057	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.001	19.495	3	0.00014523	16759	160511_QHF_FH_JSI11i_1	54.672	47.902			1.0521	1.0208	2.7543	4	0	Median	1.2386	1.0039	NaN	1	0	Median	0.85098	1.0145	NaN	1	0	Median	1.1128	1.0691	NaN	1	0	Median	0.99467	1.0271	NaN	1	0	Median	261110000	132770000	128340000	50376000	23385000	26991000	63816000	37964000	25851000	73166000	37021000	36145000	73755000	34404000	39351000	45538	4988	42863	275670;275671;275672;275673	369872;369873;369874;369875;369876;369877;369878	369873			7	
SGPPGEEAQVASQFIADVIENSQIIQK	1	Unmodified	2854.4349	0.43486693	3977	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	102.79	102.74	3	7.4563E-36	89576	160511_QHF_FH_JSI12i_3	157.31	146.51			0.884	0.87208	15.802	4	0	Median	1.1774	0.99626	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94547	0.88801	NaN	1	0	Median	0.72247	0.76491	15.986	2	0	Median	358400000	180630000	177770000	70523000	28731000	41792000	0	0	0	58797000	29314000	29483000	229080000	122580000	106500000	45539	3977	42864	275674;275675;275676;275677	369879;369880;369881;369882;369883	369883			5	
SGPQSASTAVK	1	Unmodified	1031.5247	0.52473799	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.9408	8.5778	2	0.00030624	6522	160511_QHF_FH_JSI12i_1	93.667	77.523			0.95215	0.94411	21.545	4	0	Median	1.1563	0.93912	NaN	1	0	Median	0.78403	0.94913	NaN	1	0	Median	1.4394	1.352	NaN	1	0	Median	0.78367	0.81524	NaN	1	0	Median	257280000	141240000	116050000	55241000	28794000	26447000	66724000	43075000	23649000	71502000	30793000	40710000	63818000	38577000	25241000	45540	4413	42865	275678;275679;275680;275681	369884;369885;369886;369887	369886			4	
SGPRPVVLSGPSGAGK	1	Acetyl (Protein N-term)	1506.8154	0.8154407	2763	Q16774	GUK1	Guanylate kinase	no	no	0	1	0	1	By matching		By matching		1	0	2									1		1		41.261	40.493	2	1			NaN	NaN			1.0854	0.95633	5.0555	2	0	Median	1.1133	0.92275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0582	0.99114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116590000	52083000	64512000	45824000	23156000	22668000	0	0	0	70770000	28927000	41844000	0	0	0	45541	2763	42866	275682;275683					0	
SGPSLNELIPDGYNR	0	Unmodified	1630.7951	0.79509919	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		74.106	73.631	2	0.00013346	66996	160511_QHF_FH_JSI11i_1	96.756	77.799			0.66568	0.7078	15.763	3	0	Median	0.66568	0.55544	NaN	1	0	Median	0.66334	0.7466	NaN	1	0	Median	0.72038	0.7078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99193000	59329000	39865000	23485000	12299000	11186000	34157000	24033000	10124000	41552000	22997000	18555000	0	0	0	45542	3819	42867	275684;275685;275686	369888;369889;369890;369891;369892	369889			4	
SGPSVPVSVQTK	1	Unmodified	1184.6401	0.6401021	5543	Q9Y2W2	WBP11	WW domain-binding protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.78	4				1	2				1	3	2	1	38.569	35.097	2	2.5815E-06	31578	160511_QHF_FH_JSI12i_1	121.36	91.551			0.50329	0.48715	50.354	6	6	Median	0.51479	0.41865	NaN	1	1	Median	0.59395	0.69365	47.407	2	2	Median	0.69263	0.69029	51.864	2	2	Median	0.25691	0.27329	NaN	1	1	Median	2912400000	2289900000	622450000	627230000	475070000	152160000	701720000	545920000	155800000	688280000	496740000	191540000	895160000	772200000	122960000	45543	5543	42868	275687;275688;275689;275690;275691;275692;275693	369893;369894;369895;369896;369897;369898;369899	369894			7	
SGPTDDGEEEMEEDTVTNGS	0	Unmodified	2097.7804	0.7804325	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.853	41.48	2	6.7688E-25	37438	160511_QHF_FH_JSI11i_1	177.1	177.1			1.227	1.3178	18.295	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2768	1.4998	NaN	1	1	Median	1.1791	1.1579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72365000	29062000	43303000	0	0	0	28100000	10842000	17259000	44265000	18220000	26045000	0	0	0	45544	937	42869	275694;275695;275696	369900;369901;369902	369900			3	
SGPTWLPPK	1	Acetyl (Protein N-term)	1023.5389	0.53893149	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	61.57	60.92	2	0.0062315	55432	160511_QHF_FH_JSI12i_1	44.447	21.018			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45545	2697	42870	275697	369903	369903			1	
SGPVILADEIK	1	Unmodified	1140.639	0.63903946	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.175	57.842	2	0.026319	49601	160511_QHF_FH_JSI12i_2	57.174	27.701			0.60413	0.66852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60413	0.66852	NaN	1	0	Median	33851000	19480000	14371000	0	0	0	0	0	0	0	0	0	33851000	19480000	14371000	45546	1796	42871	275698	369904	369904			0	
SGPYGFHEMQELWTK	1	Unmodified	1808.8192	0.81920545	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.308	73.161	3	0.0036859	63418	160511_QHF_FH_JSI12i_3	76.391	69.333			1.0989	1.0718	11.247	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.239	1.1606	NaN	1	0	Median	0.97468	0.98989	NaN	1	0	Median	82381000	41072000	41309000	0	0	0	0	0	0	31270000	14378000	16892000	51110000	26694000	24417000	45547	486	42872	275699;275700	369905;369906	369906			0	
SGQDPYAR	0	Unmodified	892.40389	0.40389457	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.3164	6.9806	2	0.0056357	4719	160511_QHF_FH_JSI11i_1	73.248	57.809			1.0456	1.975	143.33	4	3	Linear	0.078795	0.065586	NaN	1	0	Median	1.0158	1.206	NaN	1	1	Median	1.1296	1.1057	NaN	1	1	Median	1.0763	1.1459	NaN	1	1	Median	1507700000	713980000	793710000	163730000	149230000	14496000	458830000	193750000	265080000	462930000	184000000	278930000	422210000	187010000	235200000	45548	2294	42873	275701;275702;275703;275704	369907;369908;369909;369910	369907			4	
SGQGAFGNMCR	0	Unmodified	1183.4863	0.48626077	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.53	5.28	4	5	3					3		1	6	5	3	22.581	20.802	2	1.1558E-37	18050	160511_QHF_FH_JSI10i_2	199.46	186.83			0.94432	1.0499	20.631	14	5	Median	1.471	1.2545	NaN	1	0	Median	0.97348	1.1392	22.27	6	3	Median	0.93065	0.89762	6.9351	5	2	Median	0.9657	1.0144	8.43	2	0	Median	1993800000	984970000	1008900000	148850000	63239000	85614000	693390000	342810000	350580000	777090000	393120000	383970000	374490000	185800000	188690000	45549	1457	42874	275705;275706;275707;275708;275709;275710;275711;275712;275713;275714;275715;275716;275717;275718;275719	369911;369912;369913;369914;369915;369916;369917;369918;369919;369920;369921;369922;369923;369924;369925;369926;369927;369928;369929;369930	369926			20	
SGQGAFGNMCR	0	Oxidation (M)	1199.4812	0.48117539	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	6.73	5.91	1	3	3				2	2			1	5	5	15.716	12.47	2	0.00057481	17267	160511_QHF_FH_JSI11i_2	72.643	69.636			0.95565	1.0066	17.504	11	1	Median	NaN	NaN	NaN	0	0	Median	0.90818	1.0553	NaN	1	0	Median	0.91055	0.87786	13.134	5	0	Median	1.1183	1.1282	11.252	5	1	Median	280900000	157430000	123470000	0	0	0	49353000	28578000	20775000	140850000	85441000	55414000	90693000	43415000	47278000	45550	1457	42874	275720;275721;275722;275723;275724;275725;275726;275727;275728;275729;275730	369931;369932;369933;369934;369935;369936;369937;369938;369939;369940;369941	369936		1126	11	
SGQGDALASGPVETGPMK	1	Unmodified	1700.8039	0.80394931	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.908	42.28	2	0.00032323	38433	160511_QHF_FH_JSI12i_1	83.823	65.959			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9144500	9144500	0	0	0	0	0	0	0	0	0	0	9144500	9144500	0	45551	1535	42875	275731	369942	369942			1	
SGQLNLSGR	0	Unmodified	930.48829	0.4882929	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		18.362	17.797	2	0.0097011	14447	160511_QHF_FH_JSI11i_2	50.805	28.275			1.0841	0.99826	11.588	2	0	Median	1.2773	1.0835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92017	0.91973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118290000	64490000	53797000	51311000	22962000	28348000	0	0	0	66976000	41528000	25449000	0	0	0	45552	4803	42876	275732;275733	369943	369943			1	
SGQSALYDALFSSQSPK	1	Unmodified	1784.8581	0.85809337	1685;31	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.763	75.887	2;3	2.6726E-09	65566	160511_QHF_FH_JSI12i_2	134.24	109.9			0.91434	1.1603	19.381	3	2	Plateau	0.91434	0.79167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1747	1.1603	NaN	1	0	Median	0.82201	0.90681	NaN	1	1	Median	114970000	61072000	53899000	14156000	7856900	6299100	0	0	0	80885000	41494000	39391000	19930000	11721000	8209100	45553	1685;31	42877	275734;275735;275736;275737	369944;369945;369946;369947	369944			3	
SGREGGK	1	Acetyl (Protein N-term)	731.35622	0.3562161	5533	Q9Y2S6	TMA7	Translation machinery-associated protein 7	yes	yes	0	1	0	1		By MS/MS			2	0		1									1			1.6814	1.3301	2	0.013278	775	160511_QHF_FH_JSI10i_2	46.426	29.462			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45554	5533	42878	275738	369948	369948			1	
SGRGKGGKGLGKGGAK	4	3 Acetyl (K);Acetyl (Protein N-term)	1581.8587	0.8587025	2019	P62805	HIST1H4A	Histone H4	yes	yes	3	1	0	4	By MS/MS			By MS/MS	13.5	0.5						1	1			1			1	25.856	12.507	3	0.0014327	5677	160513_QHF_FH_JSI9Kac_3	64.275	44.989			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45555	2019	42879	275739;275740	369949;369950	369949	2053;2054;2055;2056		2	
SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK	1	Unmodified	4055.0276	0.027624904	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	1	2	3	3	100.04	97.261	4	7.0451E-200	88444	160511_QHF_FH_JSI12i_3	300.25	297.18			0.88605	1.0586	22.503	9	1	Median	1.2225	1.0586	NaN	1	0	Median	0.80564	0.9606	18.219	2	1	Median	1.1152	1.0855	6.1402	3	0	Median	0.70966	0.77976	15.335	3	0	Median	2561200000	1427300000	1133900000	186740000	86075000	100670000	388080000	239240000	148840000	978530000	495650000	482870000	1007900000	606360000	401530000	45556	1302	42880	275741;275742;275743;275744;275745;275746;275747;275748;275749	369951;369952;369953;369954;369955;369956;369957;369958;369959	369956			9	
SGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASK	3	Unmodified	3834.7767	0.77667433	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.122	52.455	4	5.6051E-18	47725	160511_QHF_FH_JSI12i_1	76.669	68.264			0.86056	0.91099	8.6438	4	2	Median	1.1549	0.97554	NaN	1	1	Median	0.74766	0.90681	NaN	1	1	Median	0.9723	0.91519	NaN	1	0	Median	0.76165	0.79406	NaN	1	0	Median	243280000	157190000	86092000	37843000	26255000	11588000	65471000	58025000	7446300	64450000	31204000	33246000	75516000	41705000	33811000	45557	2988	42881	275750;275751;275752;275753	369960;369961;369962;369963;369964;369965;369966;369967	369964			8	
SGSAPILK	1	Unmodified	771.44905	0.44905385	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		8.5	5.5			1				1			1		1		21.419	16.97	2	0.011946	11022	160513_QHF_FH_JSI11Kac_4	63.565	28.27			0.95878	0.84009	21.979	2	1	Median	0.9124	0.71917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0075	0.98134	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41151000	22208000	18944000	30355000	16873000	13482000	0	0	0	10797000	5334800	5461900	0	0	0	45558	4260	42882	275754;275755	369968;369969	369968			2	
SGSEEAVTDPGER	0	Unmodified	1332.5794	0.57935233	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.772	13.358	2	0.0091867	11147	160511_QHF_FH_JSI12i_1	58.172	18.018			0.91163	0.96941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91163	0.96941	NaN	1	1	Median	22173000	13438000	8735000	0	0	0	0	0	0	0	0	0	22173000	13438000	8735000	45559	3832	42883	275756	369970	369970			1	
SGSEEAVTDPGEREAGASLYQGLMR	0	Unmodified	2609.2028	0.20275851	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				64.29	63.357	3	5.986E-08	55717	160511_QHF_FH_JSI9i_2	72.771	64.483			1.1826	1.0468	NaN	1	1	Median	1.1826	1.0468	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16237000	6556900	9680100	16237000	6556900	9680100	0	0	0	0	0	0	0	0	0	45560	3832	42884	275757	369971	369971			1	
SGSESSVDQK	1	Unmodified	1022.4516	0.45163262	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	5.63	4				3	1				1	2	3	2	4.9556	0.72565	2	2.9624E-56	2545	160511_QHF_FH_JSI10i_1	237.08	197.78			0.95875	1.0322	25.581	7	0	Median	NaN	NaN	NaN	0	0	Median	0.95902	1.1294	11.16	2	0	Median	1.0891	1.0679	7.6225	3	0	Plateau	0.61627	0.65184	15.218	2	0	Median	785250000	411860000	373390000	0	0	0	292310000	147230000	145070000	257790000	119270000	138530000	235140000	145360000	89789000	45561	5474	42885	275758;275759;275760;275761;275762;275763;275764;275765	369972;369973;369974;369975;369976;369977;369978;369979;369980;369981	369978			10	
SGSFPMPELK	1	Unmodified	1091.5321	0.53213155	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	60.575	60.07	2	0.0083816	51676	160511_QHF_FH_JSI12i_2	51.445	36.006			1.2224	1.215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2224	1.215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32664000	18430000	14234000	0	0	0	0	0	0	32664000	18430000	14234000	0	0	0	45562	1873	42886	275766;275767	369982;369983	369982			2	
SGSGKVYQGPAK	2	Acetyl (K)	1219.6197	0.619701	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.3	0.471						2	1				2		1	24.887	16.794	2	4.7184E-05	10580	160513_QHF_FH_JSI12Kac_3	96.015	84.525			0.69186	0.78392	4.9055	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64734	0.75719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73944	0.81158	NaN	1	0	Median	10672000	6555700	4116300	0	0	0	5521500	3490400	2031000	0	0	0	5150500	3065200	2085300	45563	1747	42887	275768;275769;275770	369984;369985;369986;369987;369988	369985	1766		5	
SGSGNFGGGR	0	Unmodified	894.39439	0.39439252	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		5.8451	5.4986	2	0.0022681	3379	160511_QHF_FH_JSI11i_2	60.892	24.322			1.056	0.94907	10.566	3	0	Median	1.1284	0.94907	NaN	1	0	Median	0.70744	0.8783	NaN	1	0	Median	1.056	1.0825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	196370000	106290000	90087000	49907000	26108000	23798000	67244000	37706000	29538000	79223000	42473000	36751000	0	0	0	45564	936	42888	275771;275772;275773	369989	369989			1	
SGSGTMNLGGSLTR	0	Unmodified	1336.6405	0.6405128	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	2	1	38.258	37.604	2	1.6737E-23	33037	160511_QHF_FH_JSI11i_3	152.23	124.02			0.87064	1.0711	20.85	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.0377	1.2522	14.124	2	1	Median	1.1033	1.0125	NaN	1	1	Median	0.83796	0.84087	NaN	1	0	Median	558950000	303850000	255100000	0	0	0	246640000	139150000	107490000	150840000	78114000	72726000	161470000	86585000	74883000	45565	1607	42889	275774;275775;275776;275777;275778	369990;369991;369992;369993;369994;369995	369991			6	
SGSGTMNLGGSLTR	0	Oxidation (M)	1352.6354	0.63542742	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	11.2	4.76			1				3				1	1	2	32.568	23.399	2	0.0005058	14330	160513_QHF_FH_JSI12Kac_4	83.397	58.542			0.89091	1.0518	11.302	3	0	Median	NaN	NaN	NaN	0	0	Median	0.89091	1.0518	NaN	1	0	Median	1.1019	1.1032	NaN	1	0	Median	0.82927	0.88958	NaN	1	0	Median	11202000	5529200	5672900	0	0	0	2832300	1395800	1436400	4857500	2240600	2616900	3512300	1892800	1619500	45566	1607	42889	275779;275780;275781;275782	369996;369997;369998;369999	369998		1285	4	
SGSHTVAVMNVGAPAAGMNAAVR	0	Unmodified	2167.0626	0.062640392	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.16		6	4						4	4	3	3	4	57.206	53.704	2;3	9.2646E-26	47269	160511_QHF_FH_JSI9i_2	176.91	147.23			1.0922	1.1345	18.621	13	2	Median	1.5989	1.3664	15.898	3	0	Median	0.97852	1.134	8.7633	3	0	Median	1.0742	1.0646	8.1519	3	0	Plateau	0.73193	0.78739	16.88	4	2	Linear	1267200000	595750000	671440000	273990000	98077000	175910000	522640000	261910000	260730000	276650000	131190000	145450000	193910000	104570000	89338000	45567	897	42890	275783;275784;275785;275786;275787;275788;275789;275790;275791;275792;275793;275794;275795;275796	370000;370001;370002;370003;370004;370005;370006;370007;370008;370009;370010;370011;370012;370013;370014;370015;370016;370017;370018;370019;370020;370021;370022;370023;370024	370012			25	
SGSHTVAVMNVGAPAAGMNAAVR	0	Oxidation (M)	2183.0576	0.057555014	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.81		3	2						5	3	4	2	1	48.416	42.564	3	2.9665E-07	23434	160513_QHF_FH_JSI10Kac_6	72.568	56.803			1.1226	1.0899	41.388	7	5	Median	1.6078	1.3711	32.225	3	2	Median	0.61607	0.74642	27.446	2	2	Median	1.1226	1.0899	NaN	1	0	Median	0.86043	0.93169	NaN	1	1	Median	125700000	67488000	58216000	61972000	26915000	35057000	51591000	34366000	17225000	8323400	3811700	4511700	3817100	2395400	1421700	45568	897	42890	275797;275798;275799;275800;275801;275802;275803;275804;275805;275806	370025;370026;370027;370028;370029;370030;370031;370032;370033;370034;370035;370036	370036		464;465	12	
SGSHTVAVMNVGAPAAGMNAAVR	0	2 Oxidation (M)	2199.0525	0.052469636	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	2	0	By MS/MS				15	0								2		2				42.058	32.012	3	0.0048952	17616	160513_QHF_FH_JSI9Kac_5	40.81	31.878			1.4988	1.2665	NaN	1	0	Median	1.4988	1.2665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3905200	1861800	2043400	3905200	1861800	2043400	0	0	0	0	0	0	0	0	0	45569	897	42890	275807;275808	370037;370038	370037		464;465	2	
SGSISYTELQQALSQMGYNLSPQFTQLLVSR	0	Unmodified	3445.7188	0.71876971	5259	Q9UBV8	PEF1	Peflin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		98.823	90.733	3	1.4136E-91	54413	160513_QHF_FH_JSI10Kac_6	206.4	192.88			1.2718	1.2526	25.282	3	0	Median	2.2342	1.9077	NaN	1	0	Median	1.0412	1.2526	NaN	1	0	Median	1.2718	1.2123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	576080000	250820000	325270000	148380000	57032000	91344000	298850000	138630000	160220000	128860000	55156000	73705000	0	0	0	45570	5259	42891	275809;275810;275811	370039;370040	370040			2	
SGSKAFLDALQNQAEASSK	2	Acetyl (K)	1992.9752	0.9752484	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.061	69.494	2	0.015924	36883	160513_QHF_FH_JSI11Kac_5	50.843	31.265			0.42217	0.39066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42217	0.39066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1175900	693730	482130	0	0	0	0	0	0	1175900	693730	482130	0	0	0	45571	2328	42892	275812	370041	370041	2423		1	
SGSLENVPNVGVNK	1	Unmodified	1412.726	0.72595699	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	3	3	2	47.932	43.547	2	3.8789E-98	39417	160511_QHF_FH_JSI12i_1	259.08	234.74			0.72903	0.61652	25.246	7	0	Linear	0.9183	0.74763	NaN	1	0	Median	0.66568	0.78387	46.032	2	0	Median	0.83489	0.80966	37.052	2	0	Median	0.67797	0.71531	12.679	2	0	Median	2052800000	1218500000	834310000	386020000	200420000	185600000	554320000	355050000	199270000	572990000	351360000	221640000	539510000	311700000	227810000	45572	1791	42893	275813;275814;275815;275816;275817;275818;275819;275820;275821	370042;370043;370044;370045;370046;370047;370048;370049;370050;370051;370052;370053	370043			12	
SGSLSLTQFADMISLK	1	Unmodified	1696.8706	0.87057232	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.53		5	1						3	3	3	1	2	99.156	96.403	2	1.2277E-139	50456	160513_QHF_FH_JSI10Kac_6	284.04	247.62			0.77678	0.92839	32.001	9	4	Median	1.1269	0.96777	28	3	1	Plateau	0.68734	0.85598	5.5619	3	2	Plateau	0.77678	0.78884	NaN	1	1	Median	0.53224	0.57015	3.4945	2	0	Median	1363900000	777220000	586640000	419550000	217530000	202020000	507180000	288210000	218960000	180200000	102070000	78133000	256930000	169410000	87521000	45573	1085	42894	275822;275823;275824;275825;275826;275827;275828;275829;275830	370054;370055;370056;370057;370058;370059;370060;370061;370062;370063;370064	370064			10	
SGSMATAEASGSDGK	1	Acetyl (Protein N-term)	1396.5776	0.57763777	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	4.97	4			5						1	3	2	3	25.826	21.697	2	2.3193E-81	19415	160511_QHF_FH_JSI12i_1	121.02	116.41			0.94201	0.98146	66.128	6	1	Median	0.25338	0.20642	NaN	1	1	Median	0.80236	0.92624	17.941	2	0	Median	1.0058	0.98146	2.4308	2	0	Median	1.1932	1.2498	NaN	1	0	Median	952860000	564470000	388390000	172870000	130360000	42513000	215040000	139100000	75937000	249340000	123610000	125730000	315610000	171400000	144210000	45574	307	42895	275831;275832;275833;275834;275835;275836;275837;275838;275839	370065;370066;370067;370068;370069;370070;370071;370072;370073;370074;370075;370076	370067			12	
SGSMATAEASGSDGK	1	Acetyl (Protein N-term);Oxidation (M)	1412.5726	0.57255239	307	O43169	CYB5B	Cytochrome b5 type B	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	9.33	3.73	1			5							1	3	2	15.591	8.1256	2	1.2329E-12	9090	160511_QHF_FH_JSI11i_1	113.63	105.59			1.4624	1.3967	62.422	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4624	1.3967	62.422	2	0	Median	NaN	NaN	NaN	0	0	Median	4973200	2065800	2907400	0	0	0	430480	430480	0	3784800	1635300	2149500	757870	0	757870	45575	307	42895	275840;275841;275842;275843;275844;275845	370077;370078;370079;370080;370081;370082	370077		121	6	
SGSMDPSGAHPSVR	0	Oxidation (M)	1399.615	0.61502633	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.93	4.27		19	7				1	3		5	6	10	9	12.751	10.96	2;3	9.1385E-05	6259	160511_QHF_FH_JSI12i_2	79.81	77.571			1.0454	1.1218	30.455	25	4	Median	1.5219	1.3011	20.278	4	1	Median	0.72435	0.85415	25.912	5	1	Median	1.3549	1.3134	18.37	8	0	Median	0.74966	0.79204	26.892	8	2	Median	953620000	477180000	476440000	110860000	50975000	59881000	147690000	74660000	73027000	393520000	180490000	213040000	301560000	171060000	130490000	45576	2255	42896	275846;275847;275848;275849;275850;275851;275852;275853;275854;275855;275856;275857;275858;275859;275860;275861;275862;275863;275864;275865;275866;275867;275868;275869;275870;275871;275872;275873;275874;275875	370083;370084;370085;370086;370087;370088;370089;370090;370091;370092;370093;370094;370095;370096;370097;370098;370099;370100;370101;370102;370103;370104;370105;370106;370107;370108;370109;370110	370088		1866	26	
SGSMDPSGAHPSVR	0	Unmodified	1383.6201	0.62011171	2255	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.8	3	8	4				1	5		3	5	7	6	17.476	14.514	2;3	4.1251E-10	12141	160511_QHF_FH_JSI11i_2	180.2	156.88			0.95163	0.99653	22.956	21	1	Median	1.5604	1.3039	3.6809	3	0	Plateau	0.81724	0.99653	3.5293	5	0	Median	1.1991	1.1593	19.239	7	1	Median	0.74723	0.82359	13.187	6	0	Median	2963900000	1518500000	1445400000	308880000	111470000	197410000	588320000	318850000	269470000	1072000000	526000000	545970000	994710000	562140000	432560000	45577	2255	42896	275876;275877;275878;275879;275880;275881;275882;275883;275884;275885;275886;275887;275888;275889;275890;275891;275892;275893;275894;275895;275896	370111;370112;370113;370114;370115;370116;370117;370118;370119;370120;370121;370122;370123;370124;370125;370126;370127;370128;370129;370130;370131;370132;370133;370134;370135;370136;370137;370138;370139;370140;370141;370142;370143;370144;370145;370146	370128			36	
SGSMSAYEMR	0	Unmodified	1117.4532	0.4532293	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	23.803	23.052	2	2.7359E-08	19174	160511_QHF_FH_JSI12i_2	126.07	84.415			0.81909	0.98592	22.484	5	0	Median	1.3532	1.1387	NaN	1	0	Median	0.91981	1.1208	18.136	2	0	Median	0.81909	0.82085	NaN	1	0	Median	0.68124	0.73901	NaN	1	0	Median	278970000	148710000	130260000	49882000	19896000	29985000	85231000	49042000	36189000	86416000	43878000	42538000	57443000	35897000	21546000	45578	871	42897	275897;275898;275899;275900;275901	370147;370148;370149;370150;370151	370148			5	
SGSPAVLAFAK	1	Unmodified	1046.576	0.57604528	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.88	0.781	3	3	2							1	3	2	2	53.588	52.81	2	0.00019551	45428	160511_QHF_FH_JSI12i_2	81.338	51.171			0.66567	0.77799	55.156	7	1	Median	1.2481	1.0783	NaN	1	0	Median	0.63792	0.74603	6.9481	2	0	Median	0.85655	0.82007	7.4501	2	1	Median	0.29479	0.30886	56.009	2	0	Median	277400000	161930000	115480000	45280000	22741000	22539000	65574000	39091000	26483000	77702000	38984000	38718000	88846000	61110000	27736000	45579	3734	42898	275902;275903;275904;275905;275906;275907;275908;275909	370152;370153;370154;370155;370156;370157;370158	370154			7	
SGSPVATFK	1	Unmodified	892.46543	0.46543219	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	0				By MS/MS	7.5	6.5	1						1						2	28.388	23.681	2	0.0046022	20858	160511_QHF_FH_JSI12i_1	66.568	49.328			1.205	1.3024	82.443	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.205	1.3024	82.443	2	2	Median	332730000	145030000	187700000	0	0	0	0	0	0	0	0	0	332730000	145030000	187700000	45580	4350	42899	275910;275911	370159;370160	370159			2	
SGSRSGSRSGSRSGSRR	0	Unmodified	1722.8582	0.858202	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	4	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.508	87.203	3	0.060294	49571	160513_QHF_FH_JSI9Kac_6	20.048	6.9116			1.124	1.0656	11.115	3	0	Median	1.3264	1.13	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.124	1.0656	NaN	1	0	Median	0.87107	0.91138	NaN	1	0	Median	5253600000	2235800000	3017800000	1554700000	650860000	903820000	0	0	0	2352100000	935800000	1416300000	1346900000	649170000	697680000	45581	1085	42900	275912;275913;275914	370161	370161			0	
SGSSASESYAGSEK	1	Unmodified	1345.5634	0.56336792	4175	Q96MU7	YTHDC1	YTH domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.3369	7.9767	2	0.00013324	5918	160511_QHF_FH_JSI12i_1	111.94	94.072			0.67016	0.68467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67016	0.68467	NaN	1	1	Median	32837000	22407000	10430000	0	0	0	0	0	0	0	0	0	32837000	22407000	10430000	45582	4175	42901	275915	370162	370162			1	
SGSSFVHQASFK	1	Unmodified	1280.6149	0.61494998	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			9						6	5	4	4	2	29.572	25.866	2;3	3.7756E-31	21946	160511_QHF_FH_JSI11i_3	184.36	144.74			1.0086	1.094	25.12	14	2	Median	1.3656	1.1862	7.1159	5	2	Median	0.98943	1.1465	3.4898	3	0	Median	0.90524	0.88004	10.548	4	0	Median	0.60312	0.60085	10.284	2	0	Median	1259000000	631490000	627560000	178460000	72382000	106080000	264060000	133480000	130580000	357900000	166580000	191320000	458620000	259050000	199570000	45583	1685	42902	275916;275917;275918;275919;275920;275921;275922;275923;275924;275925;275926;275927;275928;275929;275930	370163;370164;370165;370166;370167;370168;370169;370170;370171;370172;370173;370174;370175;370176;370177;370178;370179;370180;370181	370164			19	
SGSSGPETFNVGSMPSPQQQVMVGQMHR	0	Unmodified	2959.3375	0.33749462	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		69.577	68.769	3	0.00057677	61070	160511_QHF_FH_JSI10i_2	39.783	37.261			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10648000	10648000	0	0	0	0	10648000	10648000	0	0	0	0	0	0	0	45584	5628	42903	275931;275932	370182;370183	370183			2	
SGSSPEVDSK	1	Unmodified	991.44582	0.44581896	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	2	2	2	6.6222	3.9322	2	9.6438E-07	3943	160511_QHF_FH_JSI10i_1	112.71	85.581			0.79562	0.79818	25.552	6	5	Median	0.84449	0.69131	NaN	1	1	Median	0.72619	0.8489	NaN	1	0	Median	0.89249	0.84119	5.9508	2	2	Median	0.56599	0.59109	41.007	2	2	Median	607440000	330860000	276580000	138020000	63615000	74402000	156510000	91064000	65449000	8393200	4197600	4195500	304520000	171980000	132540000	45585	5474	42904	275933;275934;275935;275936;275937;275938;275939	370184;370185;370186;370187;370188;370189;370190	370188			7	
SGSSPEVK	1	Unmodified	789.38685	0.38684752	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					2	1	1	5.5419	0.57879	2	0.0049627	2951	160511_QHF_FH_JSI12i_1	65.246	43.318			1.4369	1.7217	22.437	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2025	1.4067	30.28	2	1	Median	1.2688	1.2524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	284120000	108520000	175600000	0	0	0	275520000	105020000	170500000	8602600	3506900	5095800	0	0	0	45586	5474	42905	275940;275941;275942;275943	370191;370192;370193	370191			3	
SGSSQELDVKPSASPQER	1	Unmodified	1900.9126	0.91264814	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	24.524	23.884	3	5.5936E-08	21232	160511_QHF_FH_JSI12i_1	125.73	116.79			1.1418	0.94147	16.141	3	1	Median	1.1418	0.94147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.244	1.1993	NaN	1	0	Median	0.83868	0.88318	NaN	1	0	Median	196130000	100040000	96092000	43812000	25742000	18071000	0	0	0	61513000	26157000	35355000	90810000	48144000	42665000	45587	5474	42906	275944;275945;275946	370194;370195;370196	370195			3	
SGSSSPDSEITELK	1	Unmodified	1435.6678	0.66783299	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	37.95	37.531	2	1.9697E-07	33780	160511_QHF_FH_JSI11i_1	95.018	81.356			0.66096	0.6424	42.548	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.62692	0.7369	NaN	1	1	Median	0.66096	0.6424	NaN	1	1	Median	0.32613	0.33246	NaN	1	1	Median	81042000	49274000	31768000	0	0	0	28320000	14553000	13766000	34087000	21203000	12883000	18636000	13518000	5117800	45588	1126	42907	275947;275948;275949;275950	370197;370198;370199;370200	370198			4	
SGSSSSSIPESQSNHSNQSDSGVSDTQPAGHVR	0	Unmodified	3312.4475	0.4475099	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			21.244	20.424	4	0.00027803	17534	160511_QHF_FH_JSI10i_2	36.062	33.978			0.87097	1.0719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87097	1.0719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33764000	20298000	13466000	0	0	0	33764000	20298000	13466000	0	0	0	0	0	0	45589	3200	42908	275951	370201;370202	370202			2	
SGSSSVAAMK	1	Acetyl (Protein N-term)	965.4488	0.44879585	2058	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.52	5			2						1	3	2	1	23.411	20.864	2	5.1995E-06	18352	160511_QHF_FH_JSI12i_1	68.016	55.028			1.0528	1.1297	19.095	6	0	Median	1.5001	1.253	NaN	1	0	Median	0.82789	0.9647	34.623	2	0	Median	1.1006	1.0768	12.608	2	0	Median	1.0148	1.084	NaN	1	0	Median	912570000	406890000	505680000	208890000	85683000	123200000	208560000	76625000	131940000	209870000	85263000	124600000	285260000	159320000	125940000	45590	2058	42909	275952;275953;275954;275955;275956;275957;275958	370203;370204;370205;370206;370207;370208;370209;370210;370211;370212	370205			9	
SGSSSVAAMKK	2	Acetyl (Protein N-term)	1093.5438	0.54375887	2058	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	yes	yes	0	1	0	1	By MS/MS	By MS/MS			1	0	2									1	1			15.663	15.031	2	0.0011881	12516	160511_QHF_FH_JSI10i_1	67.334	53.755			0.20343	0.16606	NaN	1	1	Median	0.20343	0.16606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64860000	63807000	1052800	21713000	20660000	1052800	43147000	43147000	0	0	0	0	0	0	0	45591	2058	42910	275959;275960	370213;370214;370215	370213			3	
SGSSSVAAMKK	2	Acetyl (K);Acetyl (Protein N-term)	1135.5543	0.55432356	2058	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	yes	yes	1	1	0	1			By MS/MS		11	0				1								1		40.974	32.064	2	0.0012363	13293	160513_QHF_FH_JSI11Kac_1	65.224	52.187			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45592	2058	42910	275961	370216	370216	2123		1	
SGSWAAIYQDIR	0	Unmodified	1365.6677	0.66771383	1133	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7	6.38		1	1						1	1	1	1		72.382	69.974	2	0.00025883	37777	160513_QHF_FH_JSI10Kac_6	92.112	74.248			1.1945	1.0212	73.087	3	3	Median	1.1945	1.0212	NaN	1	1	Median	0.25163	0.29583	NaN	1	1	Median	1.1947	1.076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90378000	50670000	39709000	21234000	9074400	12160000	29055000	24543000	4511800	40089000	17052000	23037000	0	0	0	45593	1133	42911	275962;275963;275964	370217;370218;370219	370219			3	
SGSYFALTDDSK	1	Unmodified	1289.5776	0.57756142	1889	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	47.242	46.744	2	9.4056E-05	42177	160511_QHF_FH_JSI11i_1	90.913	79.277			1.4612	1.4033	17.438	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4746	1.768	NaN	1	0	Median	1.4612	1.4033	NaN	1	0	Median	1.2145	1.2562	NaN	1	0	Median	169900000	74001000	95900000	0	0	0	54317000	19937000	34380000	61763000	25265000	36498000	53821000	28798000	25023000	45594	1889	42912	275965;275966;275967	370220;370221;370222;370223;370224	370221			4	
SGSYSYLEER	0	Unmodified	1189.5251	0.52513192	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	29.789	29.014	2	2.3E-05	24488	160511_QHF_FH_JSI12i_2	98.055	80.815			1.4285	1.4239	33.466	5	0	Median	1.7095	1.4574	NaN	1	0	Median	1.0012	1.2243	NaN	1	0	Median	1.4478	1.4322	0.82347	2	0	Median	0.58816	0.66566	NaN	1	0	Median	246920000	115130000	131790000	55323000	19344000	35979000	44620000	20382000	24238000	98162000	47093000	51069000	48815000	28312000	20503000	45595	227	42913	275968;275969;275970;275971;275972	370225;370226;370227	370225			3	
SGTDGAIALTGVDEAYTLEEFQHLLPK	1	Unmodified	2874.4287	0.42871892	4922	Q9NQH7	XPNPEP3	Probable Xaa-Pro aminopeptidase 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.68	101.5	3	1.0707E-25	87444	160511_QHF_FH_JSI12i_2	119.2	107.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81845000	35967000	45878000	0	0	0	0	0	0	0	0	0	81845000	35967000	45878000	45596	4922	42914	275973	370228	370228			0	
SGTDVDAANLR	0	Unmodified	1117.5364	0.53636531	1539	P42574	CASP3	Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	26.125	21.603	2	0.025688	19197	160511_QHF_FH_JSI12i_1	40.727	31.14			1.0378	1.0301	20.244	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2499	1.1886	NaN	1	0	Median	0.86162	0.89272	NaN	1	0	Median	66363000	35702000	30661000	0	0	0	0	0	0	1913800	705430	1208400	64449000	34997000	29452000	45597	1539	42915	275974;275975	370229;370230	370229			2	
SGTEAVLIAHK	1	Unmodified	1124.619	0.61897272	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		33.682	23.974	3	0.036354	14269	160513_QHF_FH_JSI11Kac_5	30.889	25.576			1.198	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.198	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1547900	709950	837960	0	0	0	0	0	0	1547900	709950	837960	0	0	0	45598	1716	42916	275976	370231	370231			1	
SGTEREFR	0	Unmodified	980.46756	0.46755746	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			6.118	5.6959	2	0.033774	3789	160511_QHF_FH_JSI10i_2	67.169	49.784			1.5294	1.5543	30.658	2	0	Median	1.458	1.2514	NaN	1	0	Median	1.6043	1.9305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122650000	52030000	70620000	59449000	27135000	32314000	63201000	24895000	38306000	0	0	0	0	0	0	45599	1014	42917	275977;275978	370232	370232			1	
SGTGATATVSPK	1	Unmodified	1075.551	0.55095274	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	11.499	9.7189	2	9.9391E-11	8181	160511_QHF_FH_JSI12i_1	145.23	125.72			0.88475	1.0172	18.264	5	0	Median	1.5089	1.2454	NaN	1	0	Median	0.88475	1.026	NaN	1	0	Median	0.92923	0.90277	16.878	2	0	Median	0.79461	0.81803	NaN	1	0	Median	398070000	182630000	215440000	112710000	45006000	67700000	102820000	47729000	55090000	83639000	40481000	43158000	98908000	49416000	49492000	45600	3312	42918	275979;275980;275981;275982;275983	370233;370234;370235;370236;370237;370238;370239;370240;370241	370235			9	
SGTGIAAMSVMRPEQIMK	1	Unmodified	1905.9475	0.9474592	1290	P27449	ATP6V0C	V-type proton ATPase 16 kDa proteolipid subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.14		1	7						1	3	3	2	1	69.68	67.661	2;3	1.5394E-16	60267	160511_QHF_FH_JSI11i_3	159.81	141.89			0.94969	0.88158	19.035	6	2	Median	1.0175	0.83629	10.114	2	1	Median	0.84138	0.9861	18.5	2	0	Median	0.99685	0.94505	NaN	1	0	Median	0.65456	0.63832	NaN	1	1	Median	1029500000	543980000	485550000	333390000	168340000	165050000	398090000	225500000	172590000	252830000	118350000	134480000	45215000	31788000	13428000	45601	1290	42919	275984;275985;275986;275987;275988;275989;275990;275991;275992	370242;370243;370244;370245;370246;370247;370248;370249;370250;370251;370252;370253;370254	370243			13	
SGTGIAAMSVMRPEQIMK	1	Oxidation (M)	1921.9424	0.94237383	1290	P27449	ATP6V0C	V-type proton ATPase 16 kDa proteolipid subunit	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			58.344	56.804	3	0.0022594	47516	160511_QHF_FH_JSI10i_3	58.83	48.454			0.77284	0.75222	4.2081	2	2	Median	0.9479	0.77494	NaN	1	1	Median	0.63012	0.73017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81187000	44250000	36937000	42942000	21446000	21496000	38245000	22804000	15441000	0	0	0	0	0	0	45602	1290	42919	275993;275994	370255;370256	370255		928;929;930	2	
SGTGIHIDPLGTSAWNALVQGHK	1	Unmodified	2358.208	0.2080423	3082	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	86.182	85.691	3;4	2.5776E-15	76295	160511_QHF_FH_JSI11i_3	124.69	114			0.8367	0.81392	33.523	8	2	Median	0.96954	0.83032	16.627	2	2	Median	0.98944	1.1828	40.464	2	0	Median	0.9562	0.88832	24.763	2	0	Median	0.58103	0.5991	25.682	2	0	Median	318030000	167390000	150640000	40899000	19599000	21300000	47026000	27817000	19209000	159960000	77262000	82693000	70152000	42713000	27439000	45603	3082	42920	275995;275996;275997;275998;275999;276000;276001;276002	370257;370258;370259;370260;370261;370262;370263;370264;370265;370266;370267;370268;370269;370270	370259			14	
SGTHNMYR	0	Unmodified	964.4185	0.41849878	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		6	8						6	6	6	4	4	5.3081	2.8959	2;3	9.3096E-22	2413	160511_QHF_FH_JSI12i_3	204.65	199.8			0.9023	0.99582	39.593	20	0	Median	1.8226	1.5795	16.095	6	0	Median	0.81625	0.99582	10.131	6	0	Median	0.9023	0.85294	17.365	4	0	Median	0.51929	0.51097	12.412	4	0	Linear	8269700000	4028400000	4241300000	1771400000	574350000	1197000000	3132500000	1580100000	1552400000	1911100000	958020000	953060000	1454800000	915920000	538850000	45604	2190	42921	276003;276004;276005;276006;276007;276008;276009;276010;276011;276012;276013;276014;276015;276016;276017;276018;276019;276020;276021;276022	370271;370272;370273;370274;370275;370276;370277;370278;370279;370280;370281;370282;370283;370284;370285;370286;370287;370288;370289;370290;370291;370292;370293;370294	370291			24	
SGTHSQSLPDS	0	Unmodified	1114.4891	0.48908076	2428	Q13503	MED21	Mediator of RNA polymerase II transcription subunit 21	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.239	10.004	2	0.00055931	7792	160511_QHF_FH_JSI10i_1	76.679	63.852			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45605	2428	42922	276023	370295	370295			1	
SGTIFDNFLITNDEAYAEEFGNETWGVTK	1	Unmodified	3267.4884	0.48841864	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.08	1	4	1						2	3	2	1	2	100.88	98.482	3	7.722E-136	89808	160511_QHF_FH_JSI11i_2	281.66	276			1.0198	1.1096	19.007	8	1	Median	1.3936	1.1228	12.161	3	0	Median	0.93064	1.1187	2.824	2	1	Median	1.1037	1.123	NaN	1	0	Median	0.71291	0.78267	15.521	2	0	Median	2092000000	1032400000	1059600000	382550000	155610000	226940000	315070000	144220000	170840000	835330000	411120000	424210000	559060000	321450000	237610000	45606	1297	42923	276024;276025;276026;276027;276028;276029;276030;276031	370296;370297;370298;370299;370300;370301;370302;370303;370304	370301			9	
SGTLACTGSLVNNTANDRK	1	Unmodified	1977.9538	0.95380145	59	CON__P15636			yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			33.992	32.705	3	0.00054063	28267	160511_QHF_FH_JSI9i_2	56.215	39.53		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45607	59	42924	276032;276033;276034	370305;370306;370307	370307			3	
SGTLGHPGSLDETTYER	0	Unmodified	1818.8384	0.83842057	2743	Q16595	FXN	Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.7		8	2					1		1	2	5	3	34.68	32.929	2;3	1.4098E-07	28145	160511_QHF_FH_JSI11i_2	99.215	83.676			1.234	1.2447	32.236	9	1	Median	1.602	1.3476	NaN	1	0	Median	0.88267	1.0768	NaN	1	0	Median	1.3096	1.2819	29.972	4	0	Median	0.8299	0.80843	43.444	3	1	Plateau	415950000	196690000	219260000	72870000	25831000	47039000	84058000	48011000	36047000	140880000	62916000	77968000	118140000	59932000	58209000	45608	2743	42925	276035;276036;276037;276038;276039;276040;276041;276042;276043;276044;276045	370308;370309;370310;370311;370312;370313;370314;370315;370316;370317;370318;370319	370313			12	
SGTMNSYEMR	0	Unmodified	1174.4747	0.47469303	1122	P17655	CAPN2	Calpain-2 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.02	2	2					1				1	2	2	21.603	19.562	2	0.00050275	16848	160511_QHF_FH_JSI10i_1	72.59	65.3			0.74757	0.81491	35.915	5	3	Median	NaN	NaN	NaN	0	0	Median	0.74757	0.89049	NaN	1	0	Median	0.96963	0.96212	42.846	2	2	Median	0.58299	0.62805	36.834	2	1	Median	200000000	102510000	97492000	0	0	0	60667000	29439000	31228000	57478000	29233000	28245000	81857000	43838000	38019000	45609	1122	42926	276046;276047;276048;276049;276050	370320;370321;370322;370323;370324;370325	370323			6	
SGTNLDGNDEFDEQLR	0	Acetyl (Protein N-term)	1850.7919	0.7918643	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	61.601	60.876	2	5.269E-20	55207	160511_QHF_FH_JSI11i_1	216.06	207.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45610	366	42927	276051;276052;276053	370326;370327;370328	370326			3	
SGTPVPPPSAAAAPASGEMTMDALLAR	0	Unmodified	2565.2567	0.25670833	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			87.833	87.715	3	0.027412	79608	160511_QHF_FH_JSI10i_1	31.127	23.038			0.70528	0.78437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70528	0.78437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18912000	5170400	13741000	0	0	0	18912000	5170400	13741000	0	0	0	0	0	0	45611	3376	42928	276054	370329	370329			0	
SGTQDIQPGPLFNNNADGVATDITSTR	0	Unmodified	2788.3264	0.32637912	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	78.222	77.668	2;3	2.0876E-22	70815	160511_QHF_FH_JSI11i_1	126.99	123.83			1.0506	1.0268	14.016	5	1	Median	1.1668	0.95974	15.774	2	1	Median	0.87126	1.0268	NaN	1	0	Median	1.2145	1.1776	NaN	1	0	Median	0.80743	0.85846	NaN	1	0	Median	545110000	262000000	283110000	128980000	55114000	73870000	142810000	80704000	62107000	164990000	71987000	93005000	108330000	54199000	54126000	45612	3250	42929	276055;276056;276057;276058;276059	370330;370331;370332;370333	370330			4	
SGTSEFLNK	1	Unmodified	981.47673	0.47672516	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.16	5.82	5	5	2			3	3	1		4	5	5	5	27.693	23.947	1;2	6.2104E-23	20786	160511_QHF_FH_JSI11i_1	186.3	162.33			1.0509	1.0364	33.566	19	5	Median	1.4165	1.1556	28.937	4	1	Median	0.83292	1.0198	39.986	5	2	Median	1.1161	1.1014	27.045	5	1	Median	0.68969	0.73033	16.708	5	1	Median	9073500000	4493700000	4579900000	1865500000	746750000	1118800000	2721400000	1552400000	1169000000	2581500000	1082400000	1499000000	1905200000	1112100000	793070000	45613	1057	42930	276060;276061;276062;276063;276064;276065;276066;276067;276068;276069;276070;276071;276072;276073;276074;276075;276076;276077;276078	370334;370335;370336;370337;370338;370339;370340;370341;370342;370343;370344;370345;370346;370347;370348;370349;370350;370351;370352;370353;370354;370355;370356;370357;370358;370359;370360;370361;370362;370363;370364;370365;370366;370367;370368;370369	370336			36	
SGTSSPEAVKK	2	Acetyl (Protein N-term)	1131.5772	0.57716749	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	1	0	1		By MS/MS		By MS/MS	1	0	2										1		1	10.726	10.343	2	0.00076212	8113	160511_QHF_FH_JSI10i_1	61.765	48.186			0.2967	0.29763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2967	0.29763	NaN	1	1	Median	27323000	25563000	1760000	0	0	0	0	0	0	0	0	0	27323000	25563000	1760000	45614	3262	42931	276079;276080	370370;370371	370371			2	
SGTSSPQSPVFR	0	Unmodified	1248.6099	0.6098646	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	26.622	25.346	2	1.379E-05	21186	160511_QHF_FH_JSI12i_2	94.309	73.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45615	3537	42932	276081	370372	370372			1	
SGTTIALK	1	Unmodified	789.45962	0.45961853	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	2	3	1	22.598	20.961	2	0.0030152	18391	160511_QHF_FH_JSI12i_1	75.738	49.844			0.99173	1.1421	10.972	7	0	Median	1.3262	1.1421	NaN	1	0	Median	0.90681	1.0935	8.9118	2	0	Median	0.96148	1.082	15.728	3	0	Plateau	1.1348	1.164	NaN	1	0	Median	805480000	400660000	404830000	96952000	45939000	51013000	237070000	117200000	119860000	354170000	167860000	186310000	117300000	69656000	47643000	45616	432	42933	276082;276083;276084;276085;276086;276087;276088	370373;370374;370375;370376;370377;370378;370379;370380;370381	370373			9	
SGTTPKPVINSTPGR	1	Unmodified	1510.8104	0.81035532	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			21.72	20.483	3	0.024053	16386	160511_QHF_FH_JSI9i_3	36.022	24.751			1.2674	1.2196	14.25	2	0	Median	1.6557	1.3489	NaN	1	0	Median	0.97024	1.1027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54727000	26029000	28698000	31294000	13489000	17805000	23433000	12539000	10893000	0	0	0	0	0	0	45617	4271	42934	276089;276090	370382;370383;370384;370385	370384			4	
SGTTSESGALSLEPSHIGDLQK	1	Unmodified	2213.0812	0.081170032	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	2	1	1	58.861	58.015	3	2.7227E-18	50854	160511_QHF_FH_JSI9i_2	135.98	126.94			0.88997	0.94637	15.071	6	5	Median	1.0473	0.89398	13.213	2	2	Median	0.80785	0.96443	7.832	2	2	Median	1.0226	1.0308	NaN	1	1	Median	0.62342	0.70171	NaN	1	0	Median	558510000	283370000	275140000	170250000	85646000	84601000	141420000	69777000	71640000	155690000	73519000	82175000	91153000	54430000	36723000	45618	3264	42935	276091;276092;276093;276094;276095;276096	370386;370387;370388;370389;370390;370391;370392	370389			7	
SGTTWVSQILDMIYQGGDLEK	1	Unmodified	2340.1308	0.13076276	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	100.25	92.141	3	1.2302E-21	55534	160513_QHF_FH_JSI10Kac_6	135.21	125.48			1.1441	1.3646	48.141	3	0	Median	1.9991	1.7117	NaN	1	0	Median	1.1441	1.3646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64902	0.67961	NaN	1	0	Median	138500000	59007000	79492000	39832000	13704000	26128000	66197000	28304000	37893000	0	0	0	32470000	16999000	15470000	45619	953;1699	42936	276097;276098;276099	370393;370394	370394			2	
SGTVDPQELQK	1	Unmodified	1200.5986	0.59863121	1361	P30626	SRI	Sorcin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	2	3	3	30.38	25.351	2	3.791E-05	12408	160513_QHF_FH_JSI12Kac_2	100.25	63.054			0.40828	0.33608	78.014	9	7	Median	0.40828	0.33608	NaN	1	1	Median	0.31821	0.3719	78.01	2	2	Median	0.63475	0.61899	56.706	3	2	Median	0.26237	0.27993	112.46	3	2	Median	4316300000	3561000000	755310000	797690000	627230000	170460000	1296400000	1105000000	191360000	822840000	613110000	209740000	1399400000	1215600000	183750000	45620	1361	42937	276100;276101;276102;276103;276104;276105;276106;276107;276108	370395;370396;370397;370398;370399;370400;370401;370402;370403;370404;370405;370406	370406			12	
SGTWWDEHLSEENVPFIK	1	Unmodified	2173.0116	0.011633904	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	89.586	89.556	3	5.7273E-09	79896	160511_QHF_FH_JSI11i_3	127.22	117.16			0.93987	0.93657	20.47	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4086	1.311	5.524	2	2	Median	0.92231	0.92566	NaN	1	0	Median	192040000	101210000	90833000	0	0	0	0	0	0	103360000	52313000	51047000	88680000	48893000	39787000	45621	919	42938	276109;276110;276111	370407;370408;370409;370410;370411;370412	370407			6	
SGTYLQGTFR	0	Unmodified	1128.5564	0.55637247	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		38.215	37.169	2	0.0011699	31638	160511_QHF_FH_JSI11i_2	72.325	55.992			1.2535	1.0923	NaN	1	0	Median	1.2535	1.0923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28356000	9511900	18844000	28356000	9511900	18844000	0	0	0	0	0	0	0	0	0	45622	5523	42939	276112;276113	370413;370414	370414			2	
SGVAEAPVGSK	1	Unmodified	1000.5189	0.51892433	4631	Q9H0E9	BRD8	Bromodomain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			15.428	14.797	2	0.0061054	12384	160511_QHF_FH_JSI10i_1	63.694	39.539			0.82857	0.81684	24.231	2	0	Median	1.1851	0.9695	NaN	1	0	Median	0.57931	0.68822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73100000	41308000	31791000	35711000	18018000	17693000	37388000	23290000	14098000	0	0	0	0	0	0	45623	4631	42940	276114;276115	370415	370415			1	
SGVAITFLTK	1	Unmodified	1035.5964	0.59644637	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.29			4					1	5	2	2	4	2	71.286	65.481	2	7.9248E-05	35363	160513_QHF_FH_JSI11Kac_6	100.48	78.09			1.0565	1.008	16.429	10	5	Median	1.1817	0.97592	5.2046	2	1	Median	0.86401	1.0055	3.7893	2	0	Median	1.2115	1.1765	13.985	4	4	Median	0.81875	0.84655	24.056	2	0	Median	1059000000	559420000	499630000	241900000	110710000	131200000	239360000	140800000	98565000	309120000	155630000	153490000	268660000	152290000	116380000	45624	4449	42941	276116;276117;276118;276119;276120;276121;276122;276123;276124;276125	370416;370417;370418;370419;370420;370421;370422;370423;370424;370425;370426;370427;370428	370419			13	
SGVDADSSYFK	1	Unmodified	1174.5142	0.51423288	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	43.794	34.774	2	0.0032935	19364	160513_QHF_FH_JSI12Kac_3	65.347	53.121			1.1317	1.1304	0.82215	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1993	1.1369	NaN	1	0	Median	1.0679	1.1238	NaN	1	0	Median	3686600	1805100	1881500	0	0	0	0	0	0	2223800	1031400	1192400	1462800	773730	689100	45625	5565	42942	276126;276127	370429;370430;370431	370431			3	
SGVDQMDLFGDMSTPPDLNSPTESK	1	Unmodified	2667.168	0.16801248	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	91.761	91.48	3	1.6317E-06	83310	160511_QHF_FH_JSI11i_1	61.109	53.575			0.89307	1.0488	13.04	3	2	Median	NaN	NaN	NaN	0	0	Median	0.89307	1.0488	NaN	1	1	Median	1.1737	1.1229	NaN	1	0	Median	0.86954	0.87264	NaN	1	1	Median	63444000	31839000	31605000	0	0	0	16558000	8736400	7821200	29685000	12569000	17116000	17201000	10534000	6667100	45626	2137	42943	276128;276129;276130	370432;370433;370434;370435	370432			4	
SGVFHVEGLDLSPK	1	Unmodified	1483.7671	0.76709352	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			67.252	66.425	3	9.7288E-05	58938	160511_QHF_FH_JSI10i_2	96.414	83.536			0.84629	1.0439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84629	1.0439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46793000	21415000	25378000	0	0	0	46793000	21415000	25378000	0	0	0	0	0	0	45627	1088	42944	276131	370436	370436			1	
SGVFNVSELVR	0	Unmodified	1205.6404	0.64043645	159	O00712	NFIB	Nuclear factor 1 B-type	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			72.858	72.086	2	0.013757	64065	160511_QHF_FH_JSI10i_2	53.08	33.09			1.206	1.4663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.206	1.4663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43470000	18501000	24970000	0	0	0	43470000	18501000	24970000	0	0	0	0	0	0	45628	159	42945	276132	370437	370437			1	
SGVGLGTK	1	Unmodified	717.4021	0.40210366	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	12.762	11.981	2	0.022157	9886	160511_QHF_FH_JSI12i_1	44.98	12.838			0.63406	0.72677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63406	0.72677	NaN	1	0	Median	35555000	21030000	14525000	0	0	0	0	0	0	0	0	0	35555000	21030000	14525000	45629	2997	42946	276133;276134	370438;370439	370439			2	
SGVGNIFIK	1	Unmodified	933.52837	0.5283668	1009	P11940;Q4VXU2;Q96DU9	PABPC1;PABPC1L;PABPC5	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	6.14	3	7	4				2	3	2	5	5	7	4	57.213	51.224	2	9.0679E-07	43359	160511_QHF_FH_JSI12i_3	135.83	39.577			1.0062	1.1043	17.252	13	2	Median	1.7105	1.4635	15.288	3	0	Median	0.92798	1.1149	6.5378	4	1	Median	1.2968	1.217	14.759	4	1	Linear	0.91982	0.94769	15.499	2	0	Median	4299400000	1954800000	2344600000	285550000	110140000	175410000	1280800000	605940000	674860000	1999100000	901380000	1097800000	733940000	337350000	396600000	45630	1009	42947	276135;276136;276137;276138;276139;276140;276141;276142;276143;276144;276145;276146;276147;276148;276149;276150;276151;276152;276153;276154;276155	370440;370441;370442;370443;370444;370445;370446;370447;370448;370449;370450;370451;370452;370453;370454;370455;370456;370457;370458;370459;370460;370461;370462;370463;370464;370465;370466;370467	370464			28	
SGVGNIFIKNLDK	2	Acetyl (K)	1445.7878	0.78782897	1009	P11940;Q96DU9	PABPC1;PABPC5	Polyadenylate-binding protein 1;Polyadenylate-binding protein 5	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.471								4	2	1	1	2	2	80.885	70.786	2	8.0049E-25	38813	160513_QHF_FH_JSI11Kac_6	168.61	52.582			0.55662	0.58503	42.809	6	0	Median	1.3701	1.105	NaN	1	0	Median	0.98022	1.1686	NaN	1	0	Median	0.47304	0.45963	4.1213	2	0	Median	0.53936	0.58503	18.478	2	0	Median	105010000	70232000	34777000	2555700	808960	1746700	8687500	4206100	4481400	76387000	52802000	23585000	17379000	12415000	4964000	45631	1009	42948	276156;276157;276158;276159;276160;276161	370468;370469;370470;370471;370472;370473;370474;370475;370476	370470	809;810		9	
SGVGNIFVK	1	Unmodified	919.51272	0.51271674	4688	Q9H361	PABPC3	Polyadenylate-binding protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.098	50.706	2	0.047412	43360	160511_QHF_FH_JSI12i_2	44.753	24.128			0.58976	0.64991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58976	0.64991	NaN	1	1	Median	58841000	32236000	26605000	0	0	0	0	0	0	0	0	0	58841000	32236000	26605000	45632	4688	42949	276162	370477	370477			1	
SGVGNIFVKNLDK	2	Acetyl (K)	1431.7722	0.7721789	4688	Q9H361	PABPC3	Polyadenylate-binding protein 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.095	70.544	2	0.028431	37385	160513_QHF_FH_JSI11Kac_5	54.776	23.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1391500	1391500	0	0	0	0	0	0	0	1391500	1391500	0	0	0	0	45633	4688	42950	276163	370478	370478			1	
SGVGNVFIK	1	Unmodified	919.51272	0.51271674	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	4.86		5	4					2		1	3	4	3	44.897	42.02	2	2.3276E-06	36057	160511_QHF_FH_JSI12i_2	140.5	28.33			0.88292	0.96458	17.872	10	3	Median	1.3043	1.0571	NaN	1	0	Median	0.79141	0.94145	11.579	3	0	Median	1.0156	1.0095	25.835	3	1	Median	0.65729	0.7394	15.476	3	2	Plateau	2271800000	1309500000	962220000	63381000	23726000	39655000	507170000	324200000	182980000	708980000	389230000	319760000	992220000	572390000	419830000	45634	2385	42951	276164;276165;276166;276167;276168;276169;276170;276171;276172;276173;276174	370479;370480;370481;370482;370483;370484;370485;370486;370487;370488;370489;370490	370481			12	
SGVGNVFIKNLDK	2	Acetyl (K)	1431.7722	0.7721789	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	77.773	67.221	2	0.00136	33138	160513_QHF_FH_JSI12Kac_5	78.692	23.266			0.55385	0.583	17.381	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52369	0.51558	NaN	1	0	Median	0.58575	0.65924	NaN	1	0	Median	42896000	27838000	15058000	0	0	0	0	0	0	38020000	25053000	12967000	4875100	2784900	2090200	45635	2385	42952	276175;276176	370491	370491	2458;2459		1	
SGVGTALLLK	1	Unmodified	957.58588	0.58588168	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	5	6	5	58.864	53.88	2	8.6819E-19	46010	160511_QHF_FH_JSI12i_3	171.36	138.52			0.93391	1.011	89.352	20	6	Median	1.7063	1.125	39.756	4	1	Linear	0.82764	1.0126	22.105	5	1	Median	1.0577	1.0529	169.03	6	2	Median	0.87827	0.91441	19.336	5	2	Median	8182100000	4169100000	4013000000	1181800000	476370000	705470000	1879400000	1022400000	857060000	2648600000	1276000000	1372600000	2472300000	1394500000	1077800000	45636	793	42953	276177;276178;276179;276180;276181;276182;276183;276184;276185;276186;276187;276188;276189;276190;276191;276192;276193;276194;276195;276196	370492;370493;370494;370495;370496;370497;370498;370499;370500;370501;370502;370503;370504;370505;370506;370507;370508;370509;370510;370511;370512;370513;370514;370515;370516;370517;370518;370519;370520;370521;370522	370519			31	
SGVIQDALK	1	Unmodified	929.5182	0.51819605	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	6.02	2	3					3				3	3	2	39.228	34.997	2	5.1108E-05	29913	160511_QHF_FH_JSI12i_2	98.033	54.787			0.74072	0.85575	36.807	8	1	Median	NaN	NaN	NaN	0	0	Median	0.87394	1.0376	16.898	3	0	Plateau	1.0069	0.98738	59.663	3	1	Median	0.60911	0.66178	20.282	2	0	Median	197520000	115490000	82028000	0	0	0	79383000	43805000	35578000	75579000	42904000	32675000	42558000	28783000	13775000	45637	3328	42954	276197;276198;276199;276200;276201;276202;276203;276204	370523;370524;370525;370526;370527;370528	370524			6	
SGVIQDALKK	2	Unmodified	1057.6132	0.61315906	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	29.462	28.667	2;3	1.5761E-05	23987	160511_QHF_FH_JSI10i_3	78.342	57.471			0.82786	0.73533	40.785	7	3	Median	1.3207	1.1032	66.278	2	2	Median	0.96426	1.0963	13.593	2	0	Median	0.56635	0.53461	NaN	1	1	Median	0.71095	0.711	4.7591	2	0	Median	543430000	333740000	209690000	28078000	11952000	16126000	138640000	79671000	58965000	57562000	32785000	24777000	319160000	209330000	109820000	45638	3328	42955	276205;276206;276207;276208;276209;276210;276211	370529;370530;370531;370532;370533;370534;370535;370536	370531			8	
SGVISGGASDLK	1	Unmodified	1089.5666	0.5666028	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.14	5					1	2			1	4	2	1	31.217	26.943	2	6.2482E-06	23714	160511_QHF_FH_JSI10i_1	98.898	72.793			0.8211	0.8064	33.049	7	4	Median	1.4816	1.2191	NaN	1	0	Median	0.59204	0.68118	32.69	3	3	Median	1.0424	1.0141	32.414	2	1	Median	0.6485	0.68159	NaN	1	0	Median	837140000	457050000	380090000	219240000	113700000	105540000	257470000	152750000	104720000	221890000	109040000	112850000	138530000	81549000	56984000	45639	2560	42956	276212;276213;276214;276215;276216;276217;276218;276219	370537;370538;370539;370540;370541;370542;370543;370544;370545	370541			9	
SGVLDESTIATILR	0	Unmodified	1473.8039	0.80387296	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	91.163	90.732	2	2.8385E-21	79735	160511_QHF_FH_JSI11i_2	172.13	137.24			0.9712	0.95851	17.665	6	2	Median	1.2853	1.125	NaN	1	1	Median	0.82415	0.97148	19.798	2	1	Median	0.98036	0.95851	1.6567	2	0	Median	0.65861	0.70673	NaN	1	0	Median	220560000	119620000	100940000	33437000	14503000	18933000	61231000	35720000	25510000	83428000	44600000	38828000	42468000	24798000	17671000	45640	721	42957	276220;276221;276222;276223;276224;276225	370546;370547;370548;370549;370550	370549			5	
SGVLDTLTK	1	Unmodified	932.51786	0.51786169	4264	Q99417	MYCBP	C-Myc-binding protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.312	44.819	2	0.015868	38453	160511_QHF_FH_JSI11i_2	54.066	47.963			0.8745	0.85791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8745	0.85791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146620000	78402000	68219000	0	0	0	0	0	0	146620000	78402000	68219000	0	0	0	45641	4264	42958	276226	370551	370551			1	
SGVLNGFIK	1	Unmodified	933.52837	0.5283668	5762				yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		51.663	50.883	2	0.0010102	44658	160511_QHF_FH_JSI11i_3	70.919	2.5482	+	+	1.2237	1.2725	4.4867	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0533	1.2328	NaN	1	0	Median	1.4216	1.3136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1044900000	458320000	586550000	0	0	0	276150000	143340000	132810000	768720000	314980000	453740000	0	0	0	45642	5762	42959	276227;276228	370552;370553	370552			2	
SGVNSELVK	1	Unmodified	931.49746	0.4974606	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.75	4	4	1			4	2			3	4	4	4	23.529	19.859	2	4.9359E-06	16811	160511_QHF_FH_JSI11i_1	117.53	90.833			0.98834	1.064	24.075	12	0	Median	1.3353	1.1148	8.6531	2	0	Median	0.91655	1.0795	22.45	3	0	Median	1.118	1.1066	39.132	3	0	Median	0.86447	0.93221	24.437	4	0	Median	2666700000	1287700000	1379100000	594640000	238330000	356310000	486930000	253110000	233830000	867300000	397760000	469550000	717860000	398460000	319400000	45643	1444	42960	276229;276230;276231;276232;276233;276234;276235;276236;276237;276238;276239;276240;276241;276242;276243	370554;370555;370556;370557;370558;370559;370560;370561;370562;370563;370564;370565;370566;370567;370568;370569;370570;370571;370572;370573;370574;370575;370576	370554			23	
SGVNSELVKR	1	Acetyl (K)	1129.6091	0.60913632	1444	P35659	DEK	Protein DEK	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			36.557	27.023	2	0.0054422	15790	160513_QHF_FH_JSI10Kac_4	77.379	54.639			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1649200	0	1649200	0	0	0	1649200	0	1649200	0	0	0	0	0	0	45644	1444	42961	276244	370577	370577	1428		1	
SGVPVLAVSLALEGK	1	Unmodified	1438.8395	0.83953018	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	4	2	4	97.305	96.93	2;3	2.368E-11	80547	160511_QHF_FH_JSI10i_3	102.62	86.756			0.69302	0.76045	8.5672	4	1	Median	NaN	NaN	NaN	0	0	Median	0.68021	0.72227	NaN	1	1	Median	0.88245	0.8605	NaN	1	0	Median	0.66603	0.76024	7.3258	2	0	Median	88546000	51874000	36672000	0	0	0	2025400	1241200	784220	10087000	4537400	5549300	76434000	46096000	30338000	45645	2846	42962	276245;276246;276247;276248;276249;276250;276251;276252;276253;276254;276255	370578;370579;370580;370581;370582;370583;370584;370585;370586;370587;370588;370589	370582			12	
SGVQVFQQSSR	0	Unmodified	1221.6102	0.61019895	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	28.007	26.718	2	0.0089308	22433	160511_QHF_FH_JSI12i_2	49.5	21.758			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45646	3482	42963	276256;276257	370590;370591	370591			2	
SGVSITIDDPVR	0	Unmodified	1257.6565	0.65648044	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	57.605	56.947	2	0.055448	51690	160511_QHF_FH_JSI12i_1	53.237	38.544			0.66604	0.67021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66604	0.67021	NaN	1	1	Median	28256000	17424000	10832000	0	0	0	0	0	0	0	0	0	28256000	17424000	10832000	45647	5380	42964	276258	370592	370592			1	
SGVSLAALK	1	Unmodified	844.50182	0.5018177	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.37	7	6	5			4	3	4	4	6	8	10	9	47.311	42.679	1;2	1.2133E-23	24022	160513_QHF_FH_JSI10Kac_4	178.83	113.58			0.93514	0.93581	22.591	31	1	Median	1.0919	0.91398	19.334	6	0	Median	0.76707	0.92071	7.9473	8	0	Median	1.1822	1.1892	20.906	9	1	Median	0.75536	0.8197	11.757	8	0	Median	20543000000	9914000000	10629000000	3554200000	1621600000	1932600000	4123400000	2341000000	1782400000	7798000000	3351000000	4447000000	5067600000	2600400000	2467200000	45648	969;1099;1098	42965	276259;276260;276261;276262;276263;276264;276265;276266;276267;276268;276269;276270;276271;276272;276273;276274;276275;276276;276277;276278;276279;276280;276281;276282;276283;276284;276285;276286;276287;276288;276289;276290;276291	370593;370594;370595;370596;370597;370598;370599;370600;370601;370602;370603;370604;370605;370606;370607;370608;370609;370610;370611;370612;370613;370614;370615;370616;370617;370618;370619;370620;370621;370622;370623;370624;370625;370626;370627;370628;370629;370630;370631;370632;370633;370634;370635;370636;370637;370638;370639;370640;370641;370642;370643;370644;370645;370646;370647;370648;370649;370650;370651	370613			57	
SGVSLAALKK	2	Unmodified	972.59678	0.59678072	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.74	5.3			15						4	4	7	5	3	35.531	32.897	2;3	1.5011E-11	27229	160511_QHF_FH_JSI12i_3	171.36	118.19			0.71195	0.66271	123.03	19	8	Median	0.91236	0.76009	51.009	4	2	Median	0.35374	0.40401	144.86	7	2	Median	0.69218	0.66271	138.37	5	3	Median	0.60879	0.62004	153.6	3	1	Median	11695000000	6723600000	4971500000	3860600000	1718300000	2142300000	3371500000	2290500000	1081000000	2644400000	1514100000	1130300000	1818500000	1200700000	617810000	45649	969;1099;1098	42966	276292;276293;276294;276295;276296;276297;276298;276299;276300;276301;276302;276303;276304;276305;276306;276307;276308;276309;276310	370652;370653;370654;370655;370656;370657;370658;370659;370660;370661;370662;370663;370664;370665;370666;370667;370668;370669;370670;370671;370672;370673;370674;370675;370676;370677;370678;370679;370680;370681	370677			30	
SGVSLAALKK	2	Acetyl (K)	1014.6073	0.6073454	969;1099;1098	P10412;P16403;P16402	HIST1H1E;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.2;Histone H1.3	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.49							4	6		1	2	4	3	64.808	53.987	2;3	1.2912E-16	29269	160513_QHF_FH_JSI11Kac_5	169.09	126			0.76489	0.71244	137.86	9	1	Median	0.8389	0.71244	NaN	1	0	Median	4.1607	4.9432	231.7	2	1	Median	0.30564	0.30076	2.2929	3	0	Median	0.76489	0.83431	46.903	3	0	Median	402800000	271750000	131050000	27043000	16379000	10663000	40566000	15052000	25514000	278500000	203800000	74707000	56691000	36526000	20166000	45650	969;1099;1098	42966	276311;276312;276313;276314;276315;276316;276317;276318;276319;276320	370682;370683;370684;370685;370686;370687;370688	370686	734		7	
SGVWLVAPLIAK	1	Unmodified	1252.7543	0.75434399	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				96.359	96.229	2	0.0052649	84542	160511_QHF_FH_JSI9i_2	54.608	48.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45651	3930	42967	276321	370689	370689			1	
SGVYQHVTGEMMGGHAIR	0	Unmodified	1928.8985	0.89853518	879	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			5							4	1			45.277	43.685	3;4	3.2366E-07	35564	160511_QHF_FH_JSI9i_3	79.97	62.481			1.4322	1.1672	30.54	4	0	Median	1.9606	1.5872	21.602	3	0	Plateau	0.68229	0.78537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	195680000	81327000	114350000	143970000	54936000	89035000	51708000	26390000	25318000	0	0	0	0	0	0	45652	879	42968	276322;276323;276324;276325;276326	370690;370691;370692;370693;370694;370695	370692			5	
SGWESYYK	1	Acetyl (Protein N-term)	1060.4502	0.45017606	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	2	3	61.581	56.535	2	0.00011812	51157	160511_QHF_FH_JSI12i_1	77.058	72.701			1.0037	1.0636	6.9023	8	0	Median	1.2236	1.0181	NaN	1	0	Median	0.94677	1.1072	3.638	2	0	Median	1.0652	1.0336	14.414	2	0	Median	1.0181	1.0399	4.624	3	0	Plateau	727740000	347380000	380360000	203570000	90905000	112660000	205570000	108120000	97445000	134200000	63257000	70938000	184410000	85095000	99310000	45653	1023	42969	276327;276328;276329;276330;276331;276332;276333;276334	370696;370697;370698;370699;370700;370701;370702;370703;370704;370705	370699			10	
SGWSLLHK	1	Unmodified	926.4974	0.49740102	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	39.153	38.353	3	0.00097743	33336	160511_QHF_FH_JSI11i_3	69.598	60.826			0.61404	0.65202	34.147	4	0	Linear	1.3615	1.1381	NaN	1	0	Median	0.80021	0.92302	NaN	1	0	Median	1.3666	1.2964	NaN	1	0	Median	0.59138	0.59453	NaN	1	0	Median	431640000	219180000	212450000	102260000	39063000	63197000	114560000	72130000	42432000	83712000	35500000	48212000	131100000	72490000	58610000	45654	5222	42970	276335;276336;276337;276338	370706;370707;370708	370706			3	
SGYAIQADEEQLR	0	Unmodified	1478.7001	0.70013617	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.632	41.256	2	0.0012527	35290	160511_QHF_FH_JSI12i_2	61.353	53.708			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45655	3258	42971	276339	370709	370709			1	
SGYGFNEPEQSR	0	Unmodified	1369.5899	0.58985744	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	27.768	27.096	2	0.00037936	24061	160511_QHF_FH_JSI10i_1	73.632	58.481			0.99737	0.85904	29.977	3	1	Median	0.99737	0.85904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3933	1.3274	NaN	1	0	Median	0.70452	0.74711	NaN	1	0	Median	120300000	62169000	58136000	37208000	20327000	16881000	0	0	0	46982000	21214000	25769000	36115000	20629000	15486000	45656	2880	42972	276340;276341;276342;276343;276344	370710;370711;370712;370713;370714;370715	370713			6	
SGYHQSASEHGLVVIAPDTSPR	0	Unmodified	2307.1244	0.12437225	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			51.235	42.209	3;4	0.0041644	22517	160513_QHF_FH_JSI9Kac_6	55.127	46.633			1.5144	1.3069	18.41	3	2	Plateau	1.7755	1.571	26.034	2	1	Median	1.3151	1.5661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24518000	9070200	15447000	16319000	6249200	10070000	8198700	2821000	5377700	0	0	0	0	0	0	45657	979	42973	276345;276346;276347	370716;370717;370718	370716			2	
SGYIESVQHILK	1	Unmodified	1372.7351	0.73506511	4364	Q9BQP7	MGME1	Mitochondrial genome maintenance exonuclease 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	58.683	58.422	2	0.00022223	50247	160511_QHF_FH_JSI12i_3	94.616	66.603			0.87228	0.89492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87228	0.89492	NaN	1	1	Median	16725000	11853000	4872000	0	0	0	0	0	0	0	0	0	16725000	11853000	4872000	45658	4364	42974	276348;276349;276350	370719;370720;370721;370722	370720			4	
SGYIFFYMHK	1	Unmodified	1291.606	0.6059652	3304	Q86T82	USP37	Ubiquitin carboxyl-terminal hydrolase 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.693	66.009	3	5.6178E-05	35234	160513_QHF_FH_JSI9Kac_6	78.655	71.767			1.1696	1.1262	25.354	4	0	Median	1.4496	1.2402	NaN	1	0	Median	0.71378	0.84818	NaN	1	0	Median	1.5359	1.5303	NaN	1	0	Median	0.94359	1.0227	NaN	1	0	Median	150300000	66344000	83951000	55833000	25232000	30601000	38230000	21275000	16955000	34645000	9547400	25098000	21587000	10290000	11297000	45659	3304	42975	276351;276352;276353;276354	370723;370724;370725;370726;370727;370728	370725			6	
SGYIFFYMHK	1	Oxidation (M)	1307.6009	0.60087982	3304	Q86T82	USP37	Ubiquitin carboxyl-terminal hydrolase 37	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				64.926	56.026	3	0.0069838	29766	160513_QHF_FH_JSI9Kac_6	41.704	36.911			1.2853	1.097	NaN	1	0	Median	1.2853	1.097	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7863600	2837200	5026400	7863600	2837200	5026400	0	0	0	0	0	0	0	0	0	45660	3304	42975	276355	370729	370729		2242	1	
SGYLAGDK	1	Unmodified	809.39193	0.3919329	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.58	3	4	3				3	1		3	5	3	3	13.68	10.676	2	0.0022248	7238	160513_QHF_FH_JSI11Kac_4	91.853	34.676			0.9054	0.98199	22.057	13	2	Median	1.4761	1.223	17.229	3	1	Plateau	0.86198	1.0131	10.419	4	1	Median	1.1463	1.1458	15.603	3	0	Plateau	0.6742	0.72087	12.903	3	0	Median	5639000000	2968000000	2671000000	311760000	124150000	187610000	1700200000	979470000	720760000	1925900000	901750000	1024200000	1701100000	962650000	738460000	45661	1270	42976	276356;276357;276358;276359;276360;276361;276362;276363;276364;276365;276366;276367;276368;276369	370730;370731;370732;370733;370734;370735;370736;370737;370738;370739;370740;370741;370742;370743;370744;370745;370746;370747;370748;370749;370750;370751;370752	370742			23	
SGYLAGDKLLPQR	1	Acetyl (K)	1458.7831	0.78307794	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		71.978	61.178	2	0.0028951	32740	160513_QHF_FH_JSI11Kac_5	70.977	55.711			0.29545	0.28496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29545	0.28496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7061500	4890300	2171200	0	0	0	0	0	0	7061500	4890300	2171200	0	0	0	45662	1270	42977	276370	370753	370753	1174		1	
SGYLLPDTK	1	Unmodified	992.51786	0.51786169	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.32	5.7	4	4	4			3	3	1		4	5	5	5	44.049	39.882	2	5.158E-07	35791	160511_QHF_FH_JSI10i_1	138.4	96.743			0.96791	1.0253	25.943	19	1	Median	1.1462	0.96524	45.599	4	1	Median	0.90416	1.0554	11.846	5	0	Median	1.1454	1.1256	7.1883	5	0	Median	0.75891	0.79798	13.035	5	0	Median	11047000000	6089500000	4957700000	3258100000	2007100000	1251000000	2665700000	1438300000	1227400000	2798300000	1335600000	1462700000	2325200000	1308600000	1016700000	45663	1057	42978	276371;276372;276373;276374;276375;276376;276377;276378;276379;276380;276381;276382;276383;276384;276385;276386;276387;276388;276389	370754;370755;370756;370757;370758;370759;370760;370761;370762;370763;370764;370765;370766;370767;370768;370769;370770;370771;370772;370773;370774;370775;370776;370777;370778;370779;370780;370781;370782;370783;370784;370785;370786;370787;370788;370789;370790;370791;370792;370793;370794	370773			41	
SGYLSSER	0	Unmodified	897.41921	0.41921028	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.31	1	4					3	4		1	4	3	4	14.749	9.0523	2	0.0018455	8812	160511_QHF_FH_JSI11i_2	96.492	75.937			0.88738	1.052	22.444	10	3	Median	1.5148	1.2867	NaN	1	0	Median	0.96518	1.1896	7.1431	3	1	Plateau	1.0671	1.0826	1.5278	2	1	Median	0.65853	0.72962	11.397	4	1	Median	2013500000	995180000	1018300000	17944000	7417400	10527000	572450000	239480000	332980000	666910000	309710000	357200000	756150000	438570000	317570000	45664	1073	42979	276390;276391;276392;276393;276394;276395;276396;276397;276398;276399;276400;276401	370795;370796;370797;370798;370799;370800;370801;370802;370803;370804;370805	370799			11	
SGYQALPWVR	0	Unmodified	1175.6087	0.60874239	4524	Q9BXS5;Q9Y6Q5	AP1M1;AP1M2	AP-1 complex subunit mu-1;AP-1 complex subunit mu-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	63.219	62.227	2	3.6561E-05	54044	160511_QHF_FH_JSI11i_2	95.502	65.835			0.65129	0.74413	31.191	3	2	Median	0.55789	0.48059	NaN	1	1	Median	0.65129	0.74413	NaN	1	1	Median	0.85777	0.87917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	334390000	219720000	114670000	190150000	142840000	47301000	47766000	32975000	14790000	96478000	43900000	52578000	0	0	0	45665	4524	42980	276402;276403;276404;276405;276406	370806;370807;370808;370809;370810;370811;370812	370810			7	
SGYQDMPEYENFR	0	Unmodified	1634.6671	0.66712148	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.634	51.965	2	1.1273E-66	46799	160511_QHF_FH_JSI10i_1	233.54	227.82			1.0873	1.1625	25.063	4	0	Median	1.6111	1.3156	NaN	1	0	Median	1.0083	1.169	NaN	1	0	Median	1.1725	1.1559	NaN	1	0	Median	0.70872	0.74408	NaN	1	0	Median	651170000	336020000	315150000	126850000	56680000	70167000	207320000	115910000	91414000	194970000	92092000	102880000	122030000	71337000	50694000	45666	2674	42981	276407;276408;276409;276410	370813;370814;370815;370816;370817;370818;370819	370818			7	
SGYRIDFYFDENPYFENK	1	Unmodified	2303.0171	0.017113212	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	1	2	4	2	85.488	80.154	2;3	2.9258E-146	42965	160513_QHF_FH_JSI10Kac_6	326.56	313.43			1.4203	1.3551	20.542	9	2	Median	1.6993	1.4239	NaN	1	0	Median	0.93372	1.1125	6.1738	2	0	Median	1.4809	1.3989	2.3549	4	2	Median	0.85148	0.89836	18.511	2	0	Median	2157900000	1051600000	1106300000	175930000	54777000	121150000	1296200000	667520000	628710000	331530000	131800000	199740000	354180000	197510000	156670000	45667	2164	42982	276411;276412;276413;276414;276415;276416;276417;276418;276419	370820;370821;370822;370823;370824;370825;370826;370827;370828;370829;370830;370831;370832;370833	370830			14	
SGYSEVNLSK	1	Unmodified	1082.5244	0.52440364	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.092	26.512	2	0.00062574	23416	160511_QHF_FH_JSI10i_1	85.958	68.727			1.0854	1.0686	40.432	4	1	Median	1.6882	1.4013	NaN	1	0	Median	0.49392	0.5845	NaN	1	1	Median	1.3881	1.306	NaN	1	0	Median	0.84868	0.87433	NaN	1	0	Median	276700000	137670000	139030000	57319000	16364000	40955000	82940000	52885000	30055000	71620000	33548000	38072000	64818000	34875000	29943000	45668	940	42983	276420;276421;276422;276423	370834;370835;370836	370836			3	
SGYSSDRDR	0	Acetyl (Protein N-term)	1083.4581	0.45811498	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.5646	6.2302	2	1.2739E-06	4189	160511_QHF_FH_JSI12i_1	133.86	116.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45669	1128	42984	276424;276425;276426;276427	370837;370838;370839;370840	370838			4	
SGYYKVLGK	2	Acetyl (K)	1055.5651	0.56514624	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0.707							1	2	1		2	2		53.226	42.551	2	0.00048779	21724	160513_QHF_FH_JSI10Kac_5	99.802	77.842			0.31257	0.30777	65.988	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86761	1.0481	NaN	1	0	Median	0.34182	0.33815	13.312	2	0	Median	NaN	NaN	NaN	0	0	Median	44891000	34227000	10664000	0	0	0	6418100	2745000	3673200	38473000	31482000	6991200	0	0	0	45670	1589	42985	276428;276429;276430;276431	370841;370842;370843;370844;370845	370843	1600		4	
SHAAEKLR	1	Acetyl (K)	952.50903	0.50902834	462	O60934	NBN	Nibrin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		10.39	1.0434	2	0.016103	3766	160513_QHF_FH_JSI11Kac_6	66.073	40.179			0.9796	0.95673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9796	0.95673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6512000	3382600	3129400	0	0	0	0	0	0	6512000	3382600	3129400	0	0	0	45671	462	42986	276432	370846	370846	236		1	
SHAGYQTI	0	Unmodified	875.41373	0.41373097	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	14.448	13.843	2	0.0023266	8342	160513_QHF_FH_JSI11Kac_5	72.138	64.725			1.0032	0.99931	23.542	4	0	Median	0.96673	0.84779	NaN	1	0	Median	0.78375	0.94135	NaN	1	0	Median	1.0409	1.0608	NaN	1	0	Median	1.3063	1.4597	NaN	1	0	Median	660240000	309110000	351140000	99130000	39994000	59136000	118160000	62708000	55453000	275630000	129340000	146300000	167320000	77066000	90249000	45672	996	42987	276433;276434;276435;276436;276437	370847;370848;370849;370850;370851;370852;370853	370851			7	
SHAHKMVK	2	Acetyl (K);Oxidation (M)	994.50183	0.50183448	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									32	7	9	9	7	6.9	-0.79454	2;3	0.0036157	1837	160513_QHF_FH_JSI12Kac_6	67.993	53.786			0.96868	0.99798	81.029	28	3	Median	1.2304	1.0228	136.23	5	2	Median	0.65354	0.77927	99.507	8	1	Median	1.0395	1.0198	45.345	8	0	Median	0.96488	1.0169	13.591	7	0	Median	724670000	341890000	382790000	100750000	34950000	65802000	159370000	90909000	68462000	140040000	60580000	79463000	324510000	155450000	169060000	45673	3886	42988	276438;276439;276440;276441;276442;276443;276444;276445;276446;276447;276448;276449;276450;276451;276452;276453;276454;276455;276456;276457;276458;276459;276460;276461;276462;276463;276464;276465;276466;276467;276468;276469	370854;370855;370856;370857;370858;370859;370860;370861;370862;370863;370864;370865;370866;370867;370868;370869;370870;370871;370872;370873;370874;370875;370876;370877;370878;370879;370880;370881;370882;370883;370884;370885;370886;370887;370888;370889;370890;370891;370892;370893;370894;370895;370896;370897	370880	2982;2983	2323	43	
SHAHKMVK	2	Acetyl (K)	978.50692	0.50691985	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									46	10	12	14	10	10.489	2.8151	2;3	0.00060665	3235	160513_QHF_FH_JSI11Kac_6	91.069	59.134			0.749	0.77528	136.74	44	7	Median	2.015	1.7312	141.58	9	4	Median	0.47079	0.56128	72.029	12	1	Median	0.6867	0.67566	120.95	13	1	Median	0.75218	0.81308	166.77	10	1	Median	2196000000	1164600000	1031500000	354300000	107500000	246800000	1062500000	686910000	375560000	292450000	151010000	141440000	486830000	219180000	267650000	45674	3886	42988	276470;276471;276472;276473;276474;276475;276476;276477;276478;276479;276480;276481;276482;276483;276484;276485;276486;276487;276488;276489;276490;276491;276492;276493;276494;276495;276496;276497;276498;276499;276500;276501;276502;276503;276504;276505;276506;276507;276508;276509;276510;276511;276512;276513;276514;276515	370898;370899;370900;370901;370902;370903;370904;370905;370906;370907;370908;370909;370910;370911;370912;370913;370914;370915;370916;370917;370918;370919;370920;370921;370922;370923;370924;370925;370926;370927;370928;370929;370930;370931;370932;370933	370899	2982;2983		35	
SHAHKMVKWGLGLDDEGSSQGEPQSK	3	2 Acetyl (K)	2891.3508	0.35081973	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	2		By MS/MS			16	0									2		2			66.842	58.968	3;4	3.9929E-13	32355	160513_QHF_FH_JSI10Kac_6	96.887	89.775			0.78107	0.91121	1.3658	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78107	0.91121	1.3658	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43324000	22542000	20782000	0	0	0	43324000	22542000	20782000	0	0	0	0	0	0	45675	3886	42989	276516;276517	370934;370935;370936;370937	370936	2982;2983		4	
SHASASLYLLMR	0	Unmodified	1347.6969	0.69690547	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	67.397	57.554	3	0.00061615	30166	160513_QHF_FH_JSI12Kac_6	50.275	42.171			0.69778	0.76837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69778	0.76837	NaN	1	1	Median	3329100	2480200	848910	0	0	0	0	0	0	0	0	0	3329100	2480200	848910	45676	4181	42990	276518	370938	370938			1	
SHAVACVNQFIISR	0	Unmodified	1600.8144	0.81439484	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.71	5.87			5						2	2	4	1		57.37	52.05	2;3	0.00099559	28488	160513_QHF_FH_JSI10Kac_6	77.593	52.802			0.91785	0.60629	41.157	4	2	Linear	0.93267	0.73956	NaN	1	1	Median	0.72272	0.82717	31.281	2	1	Median	1.7255	1.657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98248000	65768000	32480000	30053000	20032000	10020000	62721000	43722000	18999000	5474700	2014000	3460700	0	0	0	45677	3914	42991	276519;276520;276521;276522;276523;276524;276525	370939;370940;370941;370942;370943;370944;370945	370945			7	
SHAVFTIVFTQK	1	Unmodified	1376.7452	0.74523587	411	O60333	KIF1B	Kinesin-like protein KIF1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									7	2	3		2	71.26	62.643	2;3	0.00011942	33268	160513_QHF_FH_JSI9Kac_6	83.226	76.322			0.86656	0.92542	17.179	5	2	Median	1.0827	0.92542	NaN	1	0	Median	0.63517	0.74546	8.2754	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93535	1.016	11.107	2	2	Median	118550000	63650000	54898000	20839000	11100000	9739100	54136000	30286000	23850000	0	0	0	43572000	22263000	21309000	45678	411	42992	276526;276527;276528;276529;276530;276531;276532	370946;370947;370948;370949;370950;370951;370952	370946			6	
SHAVTMFEVGK	1	Unmodified	1204.591	0.59104341	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		46	37.39	2;3	0.013098	20539	160513_QHF_FH_JSI11Kac_6	55.567	19.623			0.64825	0.74128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64825	0.74128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4849300	2913300	1936000	0	0	0	4849300	2913300	1936000	0	0	0	0	0	0	45679	3013	42993	276533;276534	370953;370954	370953			2	
SHCIAEVEK	1	Unmodified	1071.5019	0.50189405	50	CON__P02769			yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.617	11.412	2	0.010039	8829	160511_QHF_FH_JSI11i_2	50.805	31.826		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45680	50	42994	276535	370955	370955			1	
SHDTTSNTLAQLLAK	1	Unmodified	1598.8264	0.82639932	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		2	4	62.554	62.038	2;3	4.4835E-05	53195	160511_QHF_FH_JSI12i_3	89.624	78.353			1.0048	0.92025	16.667	7	3	Median	1.0048	0.90854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87498	0.85606	27.05	2	1	Median	1.0003	0.99302	14.767	4	2	Median	411790000	209740000	202050000	47216000	25868000	21349000	0	0	0	105750000	55742000	50004000	258830000	128130000	130700000	45681	3937	42995	276536;276537;276538;276539;276540;276541;276542	370956;370957;370958;370959;370960;370961;370962	370959			6	
SHEAEVLK	1	Unmodified	911.47125	0.47124585	1105	P16949	STMN1	Stathmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.51	4	8				1		8		6	5	5	5	10.637	5.9522	2;3	0.00037623	6100	160511_QHF_FH_JSI12i_2	110.31	93.755			0.97973	1.0074	21.649	21	0	Median	1.2464	1.0504	10.397	6	0	Median	0.84912	1.0323	13.233	5	0	Median	0.80183	0.81076	32.264	5	0	Median	0.9998	1.0928	6.6296	5	0	Median	9487400000	4872500000	4614900000	1815000000	738030000	1077000000	2044700000	1046300000	998430000	3537400000	2063600000	1473800000	2090300000	1024600000	1065700000	45682	1105	42996	276543;276544;276545;276546;276547;276548;276549;276550;276551;276552;276553;276554;276555;276556;276557;276558;276559;276560;276561;276562;276563	370963;370964;370965;370966;370967;370968;370969;370970;370971;370972;370973;370974;370975;370976;370977;370978;370979;370980	370964			17	
SHEAEVLKQLAEK	2	Acetyl (K)	1522.7991	0.79912193	1105	P16949	STMN1	Stathmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.8	0.433								1	3		2	2		66.125	56.529	2;3	4.1371E-07	30466	160513_QHF_FH_JSI11Kac_6	142.91	114.7			0.10667	0.11501	174.08	2	2	Median	NaN	NaN	NaN	0	0	Median	0.32468	0.39385	NaN	1	1	Median	0.035046	0.033584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44835000	35523000	9312000	0	0	0	27355000	18245000	9110500	17480000	17279000	201490	0	0	0	45683	1105	42997	276564;276565;276566;276567	370981;370982;370983;370984	370981	964		4	
SHEANSNAVR	0	Unmodified	1083.5057	0.50573388	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	0.72685	0.24175	3	0.0013217	501	160511_QHF_FH_JSI12i_2	43.297	40.93			0.74053	0.84051	46.096	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.144	1.4157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0924	1.139	62.724	2	0	Median	35649000	18833000	16816000	0	0	0	9966100	4859000	5107000	0	0	0	25683000	13974000	11709000	45684	4337	42998	276568;276569;276570	370985;370986	370985			1	
SHEGETAYIR	0	Unmodified	1161.5415	0.54145068	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.32		8						5		5	2	3	3	13.949	10.997	2;3	8.8032E-06	8826	160511_QHF_FH_JSI11i_2	105.94	79.479			0.81037	0.8109	10.97	11	1	Median	0.9772	0.83771	9.1708	4	1	Median	0.58436	0.71513	3.9428	2	0	Median	0.71748	0.7279	3.8789	2	0	Median	0.81037	0.90694	4.5212	3	0	Median	1478500000	849210000	629320000	172290000	86800000	85495000	299810000	187180000	112630000	576460000	336680000	239780000	429970000	238550000	191420000	45685	2260	42999	276571;276572;276573;276574;276575;276576;276577;276578;276579;276580;276581;276582;276583	370987;370988;370989;370990;370991;370992;370993;370994;370995;370996;370997;370998;370999;371000;371001;371002;371003	370995			14	
SHEGETSYIR	0	Unmodified	1177.5364	0.53636531	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	10.959	10.464	2	0.00011961	8373	160511_QHF_FH_JSI10i_2	84.368	42.939			0.91775	0.91727	22.154	4	1	Median	0.85929	0.71635	NaN	1	0	Median	0.69631	0.85909	NaN	1	0	Median	0.98019	0.97939	NaN	1	0	Median	1.0865	1.2123	NaN	1	1	Median	128370000	60780000	67595000	25281000	10461000	14820000	21495000	12377000	9117500	52738000	26814000	25924000	28861000	11129000	17732000	45686	2376	43000	276584;276585;276586;276587;276588	371004;371005;371006;371007;371008;371009	371009			6	
SHESNAPGSAGGQASEKPR	1	Acetyl (K)	1907.8722	0.87218031	3126	Q6PJG2	ELMSAN1	ELM2 and SANT domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		16.727	7.9546	3	0.00093377	7111	160513_QHF_FH_JSI11Kac_4	60.034	55.566			0.98502	1.0704	16.861	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0223	1.2059	NaN	1	0	Median	0.94915	0.95008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8062100	3495600	4566500	0	0	0	3798900	1668600	2130400	4263200	1827000	2436200	0	0	0	45687	3126	43001	276589;276590	371010;371011;371012;371013	371012	2775		4	
SHFEQWGTLTDCVVMRDPNTK	1	Unmodified	2520.1526	0.15257761	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2		3	2	1	69.792	66.483	3;4	3.4513E-15	59358	160511_QHF_FH_JSI11i_3	132.67	124.77			0.92033	0.97578	20.731	6	0	Median	NaN	NaN	NaN	0	0	Median	0.76957	0.91795	9.3753	3	0	Plateau	0.98959	0.92716	13.385	2	0	Median	1.3981	1.5153	NaN	1	0	Median	455710000	236470000	219240000	0	0	0	165590000	92319000	73271000	272880000	136110000	136760000	17243000	8037500	9205300	45688	936	43002	276591;276592;276593;276594;276595;276596	371014;371015;371016;371017;371018;371019;371020;371021;371022	371017			9	
SHFIVALK	1	Unmodified	913.53854	0.53853756	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	3	2	1	43.822	39.514	2;3	0.0017787	34233	160511_QHF_FH_JSI11i_3	53.166	35.927			1.0214	0.97201	22.376	7	2	Median	0.92001	0.75725	NaN	1	1	Median	0.84725	0.95099	29.663	3	1	Median	1.0709	1.0055	4.7859	2	0	Median	1.1558	1.182	NaN	1	0	Median	244940000	120840000	124100000	23432000	11840000	11592000	98722000	48158000	50564000	54988000	23786000	31202000	67797000	37053000	30744000	45689	4088	43003	276597;276598;276599;276600;276601;276602;276603	371023;371024;371025;371026;371027;371028	371023			6	
SHFVAASLSNQK	1	Unmodified	1287.6571	0.65714914	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.4			7						10	4	5	7	1	27.797	22.752	2;3	3.6729E-05	18699	160511_QHF_FH_JSI10i_3	68.563	59.863			0.98466	0.96995	42.265	13	5	Median	1.2535	1.0146	31.994	3	1	Plateau	0.89569	1.03	20.529	4	1	Median	0.99547	0.94883	54.313	6	3	Median	NaN	NaN	NaN	0	0	Median	604650000	278980000	325670000	76528000	33099000	43429000	206910000	100950000	105960000	321210000	144930000	176280000	0	0	0	45690	3377	43004	276604;276605;276606;276607;276608;276609;276610;276611;276612;276613;276614;276615;276616;276617;276618;276619;276620	371029;371030;371031;371032;371033;371034;371035;371036;371037;371038;371039;371040;371041;371042;371043;371044;371045;371046	371035			18	
SHGFAAEFK	1	Unmodified	992.47158	0.4715802	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	1	4	3	25.176	23.796	2;3	0.00064375	19706	160511_QHF_FH_JSI11i_3	54.066	43.193			1.1622	1.0967	12.294	9	0	Median	1.2711	1.0856	11.403	2	0	Median	0.97291	1.166	NaN	1	0	Median	1.1622	1.0967	10.759	3	0	Plateau	1.3039	1.3137	10.281	3	0	Plateau	832330000	369580000	462750000	57024000	25794000	31230000	74714000	39023000	35691000	339990000	150410000	189580000	360600000	154360000	206240000	45691	1857	43005	276621;276622;276623;276624;276625;276626;276627;276628;276629;276630	371047;371048;371049;371050;371051;371052;371053;371054;371055;371056;371057;371058;371059;371060;371061	371048			12	
SHGLESVPVLPGSGEAGVSFDLPAQADTLHSANK	1	Unmodified	3386.6743	0.67426236	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	86.061	85.728	3;4	3.2926E-21	74301	160511_QHF_FH_JSI12i_3	94.807	84.924			1.1647	1.0427	14.254	6	2	Median	1.179	1.0265	NaN	1	1	Median	0.72079	0.893	NaN	1	0	Median	1.0718	1.0063	7.2236	2	0	Median	1.2368	1.2552	5.9892	2	1	Median	185810000	87555000	98257000	6042200	3559400	2482800	21665000	12599000	9066200	55529000	25825000	29704000	102580000	45572000	57004000	45692	3011	43006	276631;276632;276633;276634;276635;276636	371062;371063;371064;371065;371066;371067;371068;371069;371070	371069			9	
SHGLLVQQALPK	1	Unmodified	1289.7456	0.74557022	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	42.284	41.931	2;3	0.00039006	35846	160511_QHF_FH_JSI12i_3	73.632	60.042			1.824	1.7288	28.737	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.74994	0.92858	NaN	1	0	Median	1.0562	0.98854	NaN	1	0	Median	1.3873	1.4045	31.54	2	1	Median	441570000	136960000	304610000	0	0	0	23920000	14130000	9790300	28986000	13402000	15584000	388660000	109430000	279230000	45693	4637	43007	276637;276638;276639;276640;276641	371071;371072;371073;371074;371075	371074			3	
SHGVLGLYR	0	Unmodified	1000.5454	0.54541385	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	32.383	31.251	2;3	0.00012096	25514	160511_QHF_FH_JSI9i_3	91.9	72.423			0.8059	0.92318	30.403	5	0	Median	1.2782	1.0265	4.9207	2	0	Median	0.79842	0.9134	1.5057	2	0	Median	NaN	NaN	NaN	0	0	Median	0.49712	0.49811	NaN	1	0	Median	653010000	368370000	284640000	345030000	154630000	190390000	184490000	104480000	80004000	0	0	0	123490000	109250000	14238000	45694	1792	43008	276642;276643;276644;276645;276646;276647;276648	371076;371077;371078;371079;371080;371081;371082;371083	371079			8	
SHHAASTTTAPTPAAR	0	Unmodified	1575.7754	0.7753668	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			8.3661	7.8154	2	0.00075101	5710	160511_QHF_FH_JSI10i_3	75.045	59.779			0.82146	0.94871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82146	0.94871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12221000	5211800	7008800	0	0	0	12221000	5211800	7008800	0	0	0	0	0	0	45695	3290	43009	276649	371084	371084			1	
SHHANSPTAGAAK	1	Unmodified	1247.6007	0.6006969	2683	Q15555	MAPRE2	Microtubule-associated protein RP/EB family member 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		4.5297	4.5297	2	0.00076363	2186	160511_QHF_FH_JSI11i_3	80.763	59.862			0.6146	0.55788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6146	0.55788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39536000	20795000	18741000	0	0	0	0	0	0	39536000	20795000	18741000	0	0	0	45696	2683	43010	276650	371085	371085			1	
SHIEIIR	0	Unmodified	866.4974	0.49740102	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	4	2	20.78	20.404	2;3	0.0027119	16451	160511_QHF_FH_JSI12i_3	69.998	16.444			1.2488	1.4396	21.918	5	0	Median	2.3	1.9418	NaN	1	0	Median	1.1643	1.4396	NaN	1	0	Median	1.2426	1.1983	5.9099	2	0	Median	1.6915	1.7339	NaN	1	0	Median	629360000	172990000	456370000	97649000	20050000	77599000	70258000	39089000	31169000	322100000	80042000	242060000	139350000	33808000	105550000	45697	765	43011	276651;276652;276653;276654;276655;276656;276657;276658;276659	371086;371087;371088;371089;371090;371091;371092	371092			7	
SHIFFWTWSGNSLTR	0	Unmodified	1837.89	0.89000263	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	84.819	76.199	2;3	2.8751E-74	42154	160513_QHF_FH_JSI11Kac_6	274.8	174.33			1.0397	1.0197	8.7617	7	0	Median	1.2918	1.1087	11.825	2	0	Median	0.93365	1.1138	NaN	1	0	Median	1.0643	1.0031	6.1482	2	0	Median	0.91835	0.97193	6.052	2	0	Median	1712400000	825730000	886690000	612630000	242190000	370440000	416940000	221760000	195170000	316190000	175730000	140460000	366670000	186050000	180620000	45698	4848	43012	276660;276661;276662;276663;276664;276665;276666	371093;371094;371095;371096;371097;371098;371099;371100;371101;371102	371094			10	
SHIGVVPQDTVLFNDTIADNIR	0	Unmodified	2423.2445	0.24448739	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	87.018	87.018	3	4.3704E-10	77619	160511_QHF_FH_JSI11i_3	80.303	69.435			0.68766	0.6424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68766	0.6424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31353000	18357000	12996000	0	0	0	0	0	0	31353000	18357000	12996000	0	0	0	45699	4880	43013	276667;276668	371103;371104	371103			2	
SHILPHPVVVADLLK	1	Unmodified	1636.9665	0.96646203	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.418	74.127	3	0.010382	64447	160511_QHF_FH_JSI12i_3	45.084	40.005			0.44788	0.44832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44788	0.44832	NaN	1	1	Median	29702000	20967000	8735100	0	0	0	0	0	0	0	0	0	29702000	20967000	8735100	45700	405	43014	276669	371105	371105			1	
SHILTHAK	1	Unmodified	905.5083	0.50830006	1261	P25490	YY1	Transcriptional repressor protein YY1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			5.9564	5.4468	2;3	0.0013931	3454	160511_QHF_FH_JSI9i_3	56.434	40.231			0.92396	0.90851	13.937	4	1	Median	1.1408	0.93674	3.2487	2	0	Median	0.68559	0.79633	17.561	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	508150000	253560000	254600000	260870000	115750000	145120000	247280000	137810000	109470000	0	0	0	0	0	0	45701	1261	43015	276670;276671;276672;276673	371106;371107;371108;371109;371110;371111;371112;371113	371110			8	
SHIMAAK	1	Unmodified	756.39524	0.39524414	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	6.2877	3.5554	2	0.011238	3418	160511_QHF_FH_JSI11i_3	71.378	36.486			0.87014	0.93689	18.792	12	0	Median	1.1597	0.98756	17.747	3	0	Median	0.85004	1.0409	9.4877	3	0	Median	0.66829	0.64688	13.709	3	0	Plateau	0.77604	0.84408	17.313	3	0	Plateau	6796200000	3412600000	3383700000	979040000	433990000	545050000	1210800000	618460000	592310000	1971200000	932130000	1039100000	2635200000	1428000000	1207200000	45702	1630	43016	276674;276675;276676;276677;276678;276679;276680;276681;276682;276683;276684;276685	371114;371115;371116;371117;371118;371119;371120;371121;371122;371123;371124	371114			11	
SHIMAAK	1	Oxidation (M)	772.39016	0.39015876	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		5.6987	5.6987	2	0.052195	3451	160511_QHF_FH_JSI11i_3	50.025	16.509			2.8921	2.7723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8921	2.7723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	303860000	97457000	206400000	0	0	0	0	0	0	303860000	97457000	206400000	0	0	0	45703	1630	43016	276686	371125	371125			1	
SHIMPAEFSSCPLNSDEEVNK	1	Unmodified	2390.0519	0.051860514	4646	Q9H0W9	C11orf54	Ester hydrolase C11orf54	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		58.037	57.785	3	9.9949E-25	51228	160511_QHF_FH_JSI11i_3	131.67	119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45704	4646	43017	276687;276688	371126;371127	371126			2	
SHIQIPPGLTELLQGYTVEVLR	0	Acetyl (Protein N-term)	2504.3639	0.36387424	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	1	0	0				By MS/MS	2	0		1											1	102.91	102.75	2	1.0359E-05	88712	160511_QHF_FH_JSI12i_2	99.481	90.653			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45705	1043	43018	276689	371128	371128			1	
SHISDQSPLSSK	1	Unmodified	1284.631	0.63099397	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	4.11		10	5					2		4	4	4	5	18.254	17.087	2;3	1.5784E-05	13617	160511_QHF_FH_JSI12i_3	93.096	59.833			1.0309	0.92939	40.21	13	3	Median	1.0649	0.90093	43.978	3	1	Plateau	0.45772	0.55849	61.538	2	1	Median	0.86507	0.83366	29.522	4	1	Median	0.95322	1.0074	15.764	4	0	Median	1111100000	599470000	511670000	127980000	49116000	78865000	188810000	113010000	75798000	445240000	255910000	189330000	349110000	181430000	167680000	45706	1526	43019	276690;276691;276692;276693;276694;276695;276696;276697;276698;276699;276700;276701;276702;276703;276704;276705;276706	371129;371130;371131;371132;371133;371134;371135;371136;371137;371138;371139;371140;371141;371142;371143;371144;371145;371146;371147;371148;371149;371150;371151	371151			23	
SHIYFWTLEGGSLSK	1	Unmodified	1723.857	0.85697116	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	3	3	5	4	78.259	73.243	2;3	0	38459	160513_QHF_FH_JSI11Kac_6	373.48	350.11			1.083	1.0778	14.795	14	0	Median	1.1514	0.97224	28.799	3	0	Median	0.76696	0.91639	14.658	3	0	Median	1.2137	1.1684	10.425	4	0	Median	1.0346	1.0778	4.0253	4	0	Median	4218600000	2006100000	2212500000	1331800000	627250000	704580000	834930000	495860000	339070000	841370000	358140000	483230000	1210500000	524800000	685680000	45707	737	43020	276707;276708;276709;276710;276711;276712;276713;276714;276715;276716;276717;276718;276719;276720;276721	371152;371153;371154;371155;371156;371157;371158;371159;371160;371161;371162;371163;371164;371165;371166;371167;371168;371169;371170;371171;371172;371173;371174;371175;371176;371177;371178	371161			26	
SHKDEVVK	2	Unmodified	940.49779	0.49779495	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	3.625	3.5446	2;3	0.006348	1928	160511_QHF_FH_JSI11i_3	80.688	46.436			0.66582	0.7288	99.211	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0757	1.339	NaN	1	1	Median	0.41131	0.38795	3.1442	2	0	Median	2.9274	2.9145	NaN	1	1	Median	547310000	233310000	314000000	0	0	0	109220000	50068000	59155000	223420000	131970000	91448000	214670000	51267000	163400000	45708	1600	43021	276722;276723;276724;276725	371179;371180;371181;371182;371183	371180			5	
SHKQIYYSDK	2	Acetyl (K);Acetyl (Protein N-term)	1351.6408	0.64083038	1932	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	38.186	28.96	2	1.0033E-12	16284	160513_QHF_FH_JSI10Kac_3	81.338	71.106			0.56457	0.61913	35.204	6	0	Median	NaN	NaN	NaN	0	0	Median	0.68882	0.81864	20.604	2	0	Median	0.50904	0.50639	9.5295	2	0	Median	0.70168	0.76302	54.678	2	0	Median	34080000	20487000	13593000	0	0	0	9474400	5111900	4362400	13390000	8943600	4446300	11216000	6431800	4784000	45709	1932	43022	276726;276727;276728;276729;276730;276731	371184;371185;371186;371187;371188;371189;371190;371191	371191	1940		8	
SHKSPADIVK	2	Acetyl (K)	1122.6033	0.60332266	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	1	0	0	1		By MS/MS		By MS/MS	15	0								2			1		1	31.627	22.273	3	0.026599	12295	160513_QHF_FH_JSI10Kac_5	38.783	17.912			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	872250	0	872250	0	0	0	0	0	0	0	0	0	872250	0	872250	45710	5561	43023	276732;276733	371192;371193	371193	3488		2	
SHLAIVQK	1	Unmodified	894.5287	0.52870115	3633	Q8NE01	CNNM3	Metal transporter CNNM3	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	15.463	15.494	2	0.0062002	12774	160511_QHF_FH_JSI11i_3	63.306	22.734			1.2615	1.234	28.1	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0639	1.0117	NaN	1	0	Median	1.4959	1.5053	NaN	1	0	Median	77206000	44262000	32944000	0	0	0	0	0	0	25111000	15738000	9373000	52094000	28524000	23571000	45711	3633	43024	276734;276735	371194;371195	371194			2	
SHLAKEGLYQYK	2	Acetyl (K)	1477.7565	0.75652884	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	47.815	38.526	2;3	4.1973E-16	20177	160513_QHF_FH_JSI12Kac_6	137.16	116.78			0.78059	0.845	63.211	8	1	Median	1.2028	1.0248	5.0052	2	0	Median	0.35845	0.42651	137.92	2	1	Median	0.66814	0.62369	6.1232	2	0	Median	0.78059	0.845	10.176	2	0	Median	212860000	143290000	69567000	38880000	21810000	17070000	42625000	31041000	11584000	75076000	55727000	19349000	56277000	34712000	21564000	45712	2502	43025	276736;276737;276738;276739;276740;276741;276742;276743;276744	371196;371197;371198;371199;371200;371201;371202;371203;371204;371205;371206;371207;371208;371209;371210	371207	2505		15	
SHLEPEEK	1	Unmodified	967.46108	0.4610751	4490	Q9BW71	HIRIP3	HIRA-interacting protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	6.7146	6.5183	2	0.005541	4562	160511_QHF_FH_JSI12i_2	62.546	38.591			0.53003	0.5291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53003	0.5291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28835000	16226000	12609000	0	0	0	0	0	0	28835000	16226000	12609000	0	0	0	45713	4490	43026	276745;276746	371211;371212	371211			2	
SHLFDGLDDDEPSLANGAFMPK	1	Unmodified	2375.074	0.073976164	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	90.111	90.067	3	3.5704E-17	78186	160511_QHF_FH_JSI12i_3	141.07	138.74			1.0089	1.0007	6.6558	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0072	0.95472	NaN	1	1	Median	1.0106	1.049	NaN	1	0	Median	73891000	31219000	42672000	0	0	0	0	0	0	24434000	10377000	14056000	49458000	20842000	28616000	45714	1790	43027	276747;276748	371213;371214;371215	371214			3	
SHLFFTAGK	1	Unmodified	1006.5236	0.52361577	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.6	5.2			4						1	2	1	1	1	37.013	35.88	2;3	0.007269	29304	160511_QHF_FH_JSI9i_3	34.721	20.514			0.61559	3.8982	159.52	4	2	Linear	4.6813	3.8381	185.91	2	1	Median	16.263	18.982	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.054	1.0634	NaN	1	0	Median	813750000	125490000	688250000	409410000	40151000	369260000	232310000	21938000	210370000	0	0	0	172040000	63405000	108630000	45715	5451	43028	276749;276750;276751;276752;276753	371216;371217;371218;371219	371218			4	
SHLFVDEGLK	1	Unmodified	1143.5924	0.59242362	4230	Q96RY7	IFT140	Intraflagellar transport protein 140 homolog	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	1.67	0.471	1	2								1		1	1	36.216	35.335	3	0.04683	30053	160511_QHF_FH_JSI12i_2	21.372	7.1372			0.73581	0.76189	56.345	3	0	Plateau	1.656	1.4087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0648	1.9992	NaN	1	0	Median	0.58457	0.6637	NaN	1	0	Median	106790000	58766000	48022000	35584000	17674000	17911000	0	0	0	18750000	8261700	10489000	52452000	32830000	19622000	45716	4230	43029	276754;276755;276756	371220	371220			1	
SHLGNVHDQDN	0	Unmodified	1234.5327	0.53267691	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		8	4						2	2	3	4	5	6.1246	4.9216	2;3	1.4243E-87	3769	160511_QHF_FH_JSI10i_2	253.88	236.01			1.0735	1.0767	14.617	14	0	Median	1.2279	1.0533	4.4248	2	0	Median	0.74941	0.92263	9.2526	3	0	Plateau	1.1201	1.1063	14.269	4	0	Median	1.136	1.1729	8.4181	5	0	Median	2662700000	1257400000	1405300000	253660000	115780000	137880000	338730000	181420000	157320000	1162100000	563300000	598800000	908220000	396870000	511350000	45717	3793	43030	276757;276758;276759;276760;276761;276762;276763;276764;276765;276766;276767;276768;276769;276770	371221;371222;371223;371224;371225;371226;371227;371228;371229;371230;371231;371232;371233;371234;371235;371236;371237;371238;371239;371240	371235			20	
SHLIVWQVMYGNE	0	Unmodified	1574.7551	0.75514863	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			82.988	76.387	2	0.00042202	40940	160513_QHF_FH_JSI9Kac_6	91.961	60.825			0.91249	1.0685	1.547	3	3	Plateau	1.243	1.0427	NaN	1	1	Median	0.90111	1.0581	1.8355	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	622050000	311360000	310690000	181490000	94448000	87043000	440560000	216910000	223650000	0	0	0	0	0	0	45718	404	43031	276771;276772;276773	371241;371242;371243	371241			3	
SHLKITDSAGHILYSK	2	Acetyl (K)	1810.9577	0.95774784	1678	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.798	53.099	3	0.00046913	28784	160513_QHF_FH_JSI11Kac_6	100.45	76.409			0.40853	0.39984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40853	0.39984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15109000	12731000	2377200	0	0	0	0	0	0	15109000	12731000	2377200	0	0	0	45719	1678	43032	276774	371244	371244	1701		1	
SHLLDYVMTTLLFSDK	1	Unmodified	1881.9546	0.9546363	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			12						8	5	7	5	3	101.25	97.345	2;3	4.4312E-112	50681	160513_QHF_FH_JSI11Kac_6	243.37	227.61			0.88869	0.86036	16.359	15	6	Median	1.4702	1.2692	24.42	3	1	Plateau	0.7302	0.85453	14.612	6	4	Median	1.2546	1.1764	19.415	3	1	Plateau	0.86694	0.92132	8.3184	3	0	Plateau	1951600000	947610000	1004000000	478270000	179440000	298820000	777540000	432810000	344730000	246930000	99850000	147080000	448830000	235510000	213320000	45720	2692	43033	276775;276776;276777;276778;276779;276780;276781;276782;276783;276784;276785;276786;276787;276788;276789;276790;276791;276792;276793;276794	371245;371246;371247;371248;371249;371250;371251;371252;371253;371254;371255;371256;371257;371258;371259;371260;371261;371262;371263;371264;371265;371266;371267;371268;371269;371270;371271;371272;371273	371258			29	
SHLMYAVR	0	Unmodified	975.49602	0.49602082	2699	Q15714;O75157	TSC22D1;TSC22D2	TSC22 domain family protein 1;TSC22 domain family protein 2	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.62	4.3			7						1	2	1	3	2	23.326	21.149	2;3	0.0043542	17719	160511_QHF_FH_JSI11i_3	43.808	1.6988			1.3389	1.2199	34.298	6	2	Median	1.4933	1.2199	1.7836	2	0	Median	1.2226	1.4151	NaN	1	0	Median	1.1809	1.1758	NaN	1	1	Median	0.94982	0.92821	66.832	2	1	Median	174650000	83129000	91518000	63561000	29669000	33892000	42209000	17811000	24397000	3249300	1570300	1679000	65628000	34078000	31550000	45721	2699	43034	276795;276796;276797;276798;276799;276800;276801;276802	371274;371275;371276;371277;371278;371279;371280	371275			7	
SHLPLALLPQTLLDQK	1	Unmodified	1786.0353	0.035269879	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							2	4	4	4	98.037	97.925	2;3	8.8644E-06	86783	160511_QHF_FH_JSI11i_3	87.001	73.095			0.97196	0.9232	9.2876	7	7	Median	1.0007	0.85279	NaN	1	1	Median	0.91471	1.0627	NaN	1	1	Median	0.93321	0.89146	4.0655	2	2	Median	0.97196	1.038	7.0011	3	3	Median	320120000	152240000	167880000	21524000	9411000	12113000	19587000	10968000	8618300	90973000	46545000	44428000	188040000	85318000	102720000	45722	953	43035	276803;276804;276805;276806;276807;276808;276809;276810;276811;276812;276813;276814;276815;276816	371281;371282;371283;371284;371285;371286;371287;371288;371289;371290;371291;371292;371293;371294;371295;371296;371297;371298;371299;371300	371284			20	
SHLVGVKPFEADR	1	Acetyl (K)	1495.7783	0.77832691	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	56.317	47.15	2	8.8902E-08	25606	160513_QHF_FH_JSI11Kac_6	110.86	86.002			0.76835	0.80412	15.171	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71804	0.72232	NaN	1	0	Median	0.82219	0.89518	NaN	1	0	Median	20621000	10755000	9866700	0	0	0	8904300	4500800	4403500	7218500	4176300	3042100	4498600	2077500	2421100	45723	235	43036	276817;276818;276819;276820	371301;371302;371303;371304;371305;371306	371302	131		6	
SHLVGVKPFEADRANVVGEVR	1	Acetyl (K)	2320.2288	0.22877774	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	68.781	60.08	3;4	1.9789E-05	32876	160513_QHF_FH_JSI10Kac_6	74.698	65.415			1.5053	1.8416	40.183	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.3169	1.5466	7.1551	2	0	Median	0.76175	0.72287	NaN	1	0	Median	0.77358	0.84303	NaN	1	0	Median	95132000	44967000	50164000	0	0	0	72243000	32876000	39367000	10460000	5310300	5150100	12428000	6781500	5646800	45724	235	43037	276821;276822;276823;276824;276825	371307;371308;371309;371310;371311;371312;371313	371311	131		6	
SHLVHGSSPGVMGTSVATSASK	1	Unmodified	2096.0321	0.03205177	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		32.368	31.249	3;4	2.7636E-10	25467	160511_QHF_FH_JSI9i_3	108.71	97.066			0.97255	1.0894	20.814	5	1	Median	1.4267	1.159	7.571	2	0	Median	0.83239	0.93928	20.963	2	0	Median	0.82615	0.76141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	191700000	95063000	96637000	95150000	41857000	53294000	76160000	38903000	37256000	20390000	14303000	6087100	0	0	0	45725	1443	43038	276826;276827;276828;276829;276830	371314;371315;371316;371317;371318;371319;371320;371321;371322	371318			9	
SHLVHGSSPGVMGTSVATSASK	1	Oxidation (M)	2112.027	0.026966392	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				23.943	22.622	3	4.0623E-05	18218	160511_QHF_FH_JSI9i_3	61.767	46.175			1.8673	1.5595	NaN	1	1	Median	1.8673	1.5595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13993000	3965600	10028000	13993000	3965600	10028000	0	0	0	0	0	0	0	0	0	45726	1443	43038	276831	371323	371323		1120	1	
SHMDDLNSENAK	1	Unmodified	1359.5725	0.57249282	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.964	10.763	2	9.7738E-05	8266	160511_QHF_FH_JSI11i_2	84.658	72.433			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45727	2574	43039	276832	371324	371324			1	
SHMMDVQGSTQDSAIK	1	Unmodified	1733.7713	0.77126898	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.16	2	9	5					4		3	5	7	5	31.623	28.92	2;3	5.9357E-30	24211	160511_QHF_FH_JSI12i_3	222.99	208.3			1.0616	1.0871	42.233	17	1	Median	1.0616	0.89807	45.174	3	0	Median	0.64507	0.77705	18.927	4	0	Median	1.1655	1.1537	66.604	5	1	Median	1.175	1.2527	21.646	5	0	Median	2852100000	1565200000	1287000000	562260000	267100000	295160000	646940000	395380000	251560000	746810000	454900000	291920000	896120000	447800000	448320000	45728	1034	43040	276833;276834;276835;276836;276837;276838;276839;276840;276841;276842;276843;276844;276845;276846;276847;276848;276849;276850;276851;276852	371325;371326;371327;371328;371329;371330;371331;371332;371333;371334;371335;371336;371337;371338;371339;371340;371341;371342;371343;371344;371345;371346;371347	371347			23	
SHMMDVQGSTQDSAIK	1	Oxidation (M)	1749.7662	0.7661836	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6		9	1				1	4		5	1	3	6	25.335	21.701	2;3	1.1121E-07	25089	160511_QHF_FH_JSI9i_2	134.98	112.44			0.98543	0.93827	29.987	13	5	Median	0.98543	0.81228	24.151	5	3	Median	1.1128	1.3742	NaN	1	0	Median	1.1987	1.2061	38.133	2	0	Median	0.87195	0.93827	32.299	5	2	Median	286570000	135610000	150960000	77094000	41517000	35577000	29216000	12240000	16976000	42624000	18141000	24483000	137640000	63716000	73921000	45729	1034	43040	276853;276854;276855;276856;276857;276858;276859;276860;276861;276862;276863;276864;276865;276866;276867	371348;371349;371350;371351;371352;371353;371354;371355;371356;371357;371358;371359;371360;371361;371362;371363;371364;371365	371357		646;647	18	
SHMMDVQGSTQDSAIK	1	2 Oxidation (M)	1765.7611	0.76109822	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	2	0			By MS/MS	By MS/MS	2	0		4										3	1	29.723	29.038	2;3	1.1128E-05	24486	160511_QHF_FH_JSI11i_2	148.68	138.99			1.4352	0.79062	36.497	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0738	1.0692	43.57	2	2	Median	1.4352	1.5005	NaN	1	1	Median	192890000	102430000	90466000	0	0	0	0	0	0	176030000	96544000	79489000	16861000	5883600	10978000	45730	1034	43040	276868;276869;276870;276871	371366;371367;371368;371369	371367		646;647	4	
SHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK	2	Unmodified	3052.3866	0.38661289	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		39.605	38.726	4	4.0703E-13	32304	160511_QHF_FH_JSI10i_3	72.707	70.569			0.88096	1.1362	34.713	4	1	Linear	1.3236	1.1093	NaN	1	0	Median	0.88096	1.0544	19.289	2	0	Median	0.6137	0.55661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	229680000	123630000	106050000	62163000	30061000	32102000	127940000	64441000	63495000	39583000	29132000	10451000	0	0	0	45731	6	43041	276872;276873;276874;276875	371370;371371;371372;371373;371374;371375;371376;371377	371372			8	
SHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK	2	Oxidation (M)	3068.3815	0.38152751	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			36.989	35.531	4	0.00034251	29623	160511_QHF_FH_JSI10i_3	38.012	32.582			0.64752	0.75667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64752	0.75667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25349000	14131000	11218000	0	0	0	25349000	14131000	11218000	0	0	0	0	0	0	45732	6	43041	276876	371378	371378		3	1	
SHNKVLNPPGGK	2	Acetyl (K)	1288.6888	0.68878362	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	1	0	0	1		By MS/MS	By matching	By matching	16	0									3		1	1	1	27.527	19.042	3	0.0056156	11290	160513_QHF_FH_JSI10Kac_6	46.069	38.203			0.70207	0.80185	25.698	3	0	Median	NaN	NaN	NaN	0	0	Median	0.70207	0.80185	NaN	1	0	Median	0.69696	0.68072	NaN	1	0	Median	1.0477	1.1266	NaN	1	0	Median	25208000	13908000	11300000	0	0	0	12633000	7573600	5059000	6488300	4231600	2256700	6087600	2103100	3984500	45733	4795	43042	276877;276878;276879	371379	371379	3235		1	
SHPEVIGVFGESVK	1	Unmodified	1483.7671	0.76709352	4485	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	54.859	53.688	2;3	3.2243E-05	46295	160511_QHF_FH_JSI11i_2	80.69	50.947			0.9168	0.97823	42.412	4	1	Median	1.3187	1.1834	NaN	1	0	Median	0.67224	0.80863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7798	0.85079	66.907	2	1	Median	138910000	82008000	56898000	36245000	20487000	15757000	50696000	32595000	18101000	0	0	0	51966000	28926000	23040000	45734	4485	43043	276880;276881;276882;276883;276884;276885;276886;276887	371380;371381;371382;371383;371384;371385;371386	371384			6	
SHPFIKEYQAK	2	Acetyl (K)	1388.7089	0.70885036	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	41.794	32.494	2;3	9.8366E-07	17811	160513_QHF_FH_JSI11Kac_6	105.98	88.156			0.21821	0.201	105.11	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1927	1.3603	NaN	1	0	Median	0.23389	0.2221	14.119	2	0	Median	NaN	NaN	NaN	0	0	Median	93623000	70677000	22946000	0	0	0	12772000	6757800	6014100	76331000	59400000	16931000	4519400	4519400	0	45735	178	43044	276888;276889;276890;276891	371387;371388;371389;371390;371391;371392	371387	96		6	
SHPLDPIDTVDFER	0	Unmodified	1639.7842	0.78420015	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	63.477	62.569	2;3	4.8058E-05	54452	160511_QHF_FH_JSI11i_2	73.022	68.456			0.96716	1.1399	16.197	8	0	Median	1.5225	1.3344	11.412	2	0	Median	0.92447	1.1415	2.8012	2	0	Median	1.0609	1.0624	12.573	2	0	Median	0.84946	0.94254	16.528	2	0	Median	617010000	314560000	302450000	90682000	36356000	54326000	157340000	83041000	74300000	215730000	109610000	106120000	153260000	85552000	67706000	45736	1609	43045	276892;276893;276894;276895;276896;276897;276898;276899	371393;371394;371395;371396;371397;371398;371399;371400;371401;371402;371403;371404	371401			12	
SHPSWLPPK	1	Acetyl (Protein N-term)	1089.5607	0.56072956	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	43.851	42.917	2	0.00052045	36740	160511_QHF_FH_JSI12i_2	34.253	27.357			5.447	5.6553	116.53	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.925	12.892	NaN	1	1	Median	2.2955	2.4809	NaN	1	0	Median	74829000	15481000	59347000	0	0	0	0	0	0	31610000	2356200	29254000	43219000	13125000	30093000	45737	3927	43046	276900;276901;276902;276903	371405;371406;371407;371408	371405			4	
SHQDFSR	0	Unmodified	875.38858	0.38857886	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.51		3	1						1	1		2	2	4.8771	2.7915	3	0.012139	2401	160511_QHF_FH_JSI11i_2	42.599	28.441			1.1895	1.0471	16.267	5	0	Median	1.2026	1.0471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.055	1.0626	17.061	2	0	Median	1.0988	1.1707	25.33	2	0	Median	635190000	282000000	353190000	133720000	54003000	79720000	0	0	0	225560000	103100000	122460000	275910000	124900000	151010000	45738	2252	43047	276904;276905;276906;276907;276908	371409;371410;371411;371412;371413	371411			5	
SHQGLDRQELSFAAR	0	Unmodified	1713.8547	0.85467975	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				37	35.543	3	0.00013125	28921	160511_QHF_FH_JSI9i_3	79.81	67.665			0.98118	0.81238	NaN	1	0	Median	0.98118	0.81238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75252000	44644000	30609000	75252000	44644000	30609000	0	0	0	0	0	0	0	0	0	45739	1650	43048	276909	371414;371415	371415			2	
SHQKPPQGMEIK	2	Unmodified	1378.7027	0.70271913	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	12.557	12.598	3	0.0080794	10211	160511_QHF_FH_JSI11i_3	43.382	30.822			0.63075	0.61204	4.4505	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63092	0.59308	NaN	1	0	Median	0.63059	0.6316	NaN	1	0	Median	136570000	76472000	60094000	0	0	0	0	0	0	46084000	19460000	26625000	90481000	57012000	33470000	45740	690	43049	276910;276911;276912	371416;371417	371416			2	
SHQTGIQASEDVK	1	Acetyl (Protein N-term)	1440.6845	0.68448611	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	2	3	24.987	20.477	2	1.0926E-41	17534	160511_QHF_FH_JSI10i_1	120.06	99.063			1.2428	1.2248	25.064	8	0	Median	0.96866	0.80903	NaN	1	0	Median	0.754	0.88648	0.84267	2	0	Median	1.2569	1.2248	0.052916	2	0	Median	1.3451	1.4689	5.9951	3	0	Median	1442200000	671010000	771210000	332770000	157270000	175500000	351250000	202850000	148400000	377410000	154140000	223270000	380800000	156750000	224040000	45741	2306	43050	276913;276914;276915;276916;276917;276918;276919;276920;276921	371418;371419;371420;371421;371422;371423;371424;371425;371426;371427;371428;371429;371430;371431;371432;371433	371425			16	
SHSAHFFEFLTK	1	Unmodified	1449.7041	0.70409934	1336	P30046;A6NHG4	DDT;DDTL	D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			35						20	25	8	8	14	67.068	63.385	2;3;4	1.1604E-10	31508	160513_QHF_FH_JSI12Kac_6	119.01	105.88			1.0654	1.0246	52.827	49	18	Median	0.71531	0.58732	29.331	22	8	Median	1.0226	1.2037	20.785	8	0	Median	1.4917	1.3967	22.902	8	6	Median	1.6944	1.7061	23.501	11	4	Median	2496100000	1130900000	1365200000	933610000	513910000	419700000	305320000	156040000	149280000	486500000	198620000	287880000	770690000	262350000	508340000	45742	1336	43051	276922;276923;276924;276925;276926;276927;276928;276929;276930;276931;276932;276933;276934;276935;276936;276937;276938;276939;276940;276941;276942;276943;276944;276945;276946;276947;276948;276949;276950;276951;276952;276953;276954;276955;276956;276957;276958;276959;276960;276961;276962;276963;276964;276965;276966;276967;276968;276969;276970;276971;276972;276973;276974;276975;276976	371434;371435;371436;371437;371438;371439;371440;371441;371442;371443;371444;371445;371446;371447;371448;371449;371450;371451;371452;371453;371454;371455;371456;371457;371458;371459;371460;371461;371462;371463;371464;371465;371466;371467;371468;371469;371470;371471;371472;371473;371474;371475;371476;371477;371478;371479;371480;371481;371482;371483;371484;371485;371486;371487;371488;371489;371490;371491;371492;371493;371494;371495;371496;371497;371498;371499;371500;371501;371502;371503;371504;371505	371493			69	
SHSDNSPNAFK	1	Unmodified	1202.5316	0.53161428	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.2441	8.047	2	0.0012982	5672	160511_QHF_FH_JSI11i_2	64.654	44.133			1.5793	1.5473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5793	1.5473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41717000	12005000	29712000	0	0	0	0	0	0	41717000	12005000	29712000	0	0	0	45743	616	43052	276977	371506	371506			1	
SHSIFLINVK	1	Unmodified	1156.6604	0.66044361	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.61		2	7						8	5	5	4	3	62.754	58.014	2;3	9.8464E-34	31873	160513_QHF_FH_JSI10Kac_6	198.65	173.72			1.0277	0.99075	11.608	17	1	Median	1.2132	1.0246	10.276	5	1	Median	0.81041	0.94448	16.043	5	0	Median	1.0966	1.039	4.296	4	0	Median	0.98827	1.021	4.1198	3	0	Plateau	4352700000	2127900000	2224700000	1158200000	533600000	624620000	1000600000	556910000	443650000	1349400000	619980000	729400000	844480000	417440000	427040000	45744	1400	43053	276978;276979;276980;276981;276982;276983;276984;276985;276986;276987;276988;276989;276990;276991;276992;276993;276994	371507;371508;371509;371510;371511;371512;371513;371514;371515;371516;371517;371518;371519;371520;371521;371522;371523;371524;371525;371526;371527;371528;371529;371530;371531;371532;371533;371534;371535;371536;371537;371538;371539;371540;371541;371542;371543;371544	371544			38	
SHSIKPESWSK	2	Acetyl (K)	1326.6568	0.65681479	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	38.362	29.339	2;3	0.0024013	16260	160513_QHF_FH_JSI11Kac_6	55.258	40.812			0.99095	1.063	10.698	6	0	Median	1.1247	0.95981	NaN	1	0	Median	0.90587	1.0634	3.2207	2	0	Median	1.1181	1.087	NaN	1	0	Median	0.93916	1.0425	21.639	2	0	Median	64419000	32472000	31947000	8679200	4324400	4354800	25389000	12749000	12640000	14263000	7645500	6617200	16088000	7753000	8334900	45745	2694	43054	276995;276996;276997;276998;276999;277000	371545;371546;371547;371548;371549;371550;371551;371552	371545	2638		8	
SHSITNMEIGGLK	1	Unmodified	1385.6973	0.6972994	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	43.514	43.359	2;3	5.3919E-05	37022	160511_QHF_FH_JSI12i_3	78.705	70.6			1.1536	1.1384	35.506	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5349	1.4713	NaN	1	1	Median	0.88373	0.91124	31.482	2	1	Median	110260000	47378000	62878000	0	0	0	0	0	0	55368000	23461000	31907000	54888000	23918000	30970000	45746	4226	43055	277001;277002;277003;277004;277005	371553;371554;371555;371556;371557;371558;371559	371557			7	
SHSLSQHTATSSK	1	Unmodified	1369.6586	0.65860571	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			5.0648	4.6314	2;3	5.165E-05	2500	160511_QHF_FH_JSI9i_3	102.9	80.672			1.1305	0.79492	29.469	3	1	Plateau	1.1305	0.93015	39.653	2	1	Median	0.64191	0.79492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86522000	41670000	44852000	76441000	35610000	40831000	10081000	6060300	4020300	0	0	0	0	0	0	45747	1684	43056	277006;277007;277008	371560;371561;371562;371563	371560			4	
SHSPSASQSGSQLR	0	Unmodified	1427.6753	0.6753184	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.5	3.8		7	4						1	3	5	4		7.1265	6.2513	2;3	1.946E-07	4610	160511_QHF_FH_JSI9i_2	110.15	99.245			0.96048	0.8864	18.068	12	3	Median	0.95871	0.80999	8.0347	3	2	Plateau	0.75162	0.90387	20.551	5	1	Median	1.0023	0.9634	21.729	4	0	Median	NaN	NaN	NaN	0	0	Median	588550000	286710000	301850000	155020000	74283000	80736000	325030000	161700000	163330000	108510000	50723000	57783000	0	0	0	45748	3799	43057	277009;277010;277011;277012;277013;277014;277015;277016;277017;277018;277019;277020	371564;371565;371566;371567;371568;371569;371570;371571;371572;371573;371574;371575;371576;371577;371578;371579	371571			14	
SHSSNSSPIGK	1	Unmodified	1099.5258	0.52580062	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.5242	5.572	2	1.5202E-07	3269	160511_QHF_FH_JSI11i_3	123.75	101.62			1.0312	1.0002	2.7273	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0398	0.9811	NaN	1	0	Median	1.0226	1.0197	NaN	1	1	Median	188140000	89849000	98295000	0	0	0	0	0	0	57625000	27345000	30280000	130520000	62504000	68015000	45749	2977	43058	277021;277022	371580;371581;371582	371580			3	
SHSTEPGLVLTLGQGDVGQLGLGENVMER	0	Unmodified	2992.4924	0.49239859	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				95.121	94.956	3	0.00029625	83346	160511_QHF_FH_JSI9i_2	43.936	40.939			1.9909	1.7266	NaN	1	1	Median	1.9909	1.7266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13773000	4186600	9586400	13773000	4186600	9586400	0	0	0	0	0	0	0	0	0	45750	1145	43059	277023	371583	371583			1	
SHSTEPGLVLTLGQGDVGQLGLGENVMER	0	Oxidation (M)	3008.4873	0.48731321	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	87.116	86.984	3	6.2696E-06	75499	160511_QHF_FH_JSI12i_3	45.07	38.91			0.7635	0.78675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7635	0.78675	NaN	1	0	Median	16999000	9570200	7428700	0	0	0	0	0	0	0	0	0	16999000	9570200	7428700	45751	1145	43059	277024	371584	371584		784	1	
SHSVFNIK	1	Unmodified	930.49232	0.49231565	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	23.395	23.386	3	0.027521	19896	160511_QHF_FH_JSI11i_3	63.48	52.606			0.94891	0.91191	3.0162	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0311	0.93156	NaN	1	0	Median	0.87328	0.89266	NaN	1	0	Median	150240000	63385000	86852000	0	0	0	0	0	0	52699000	19068000	33631000	97538000	44317000	53221000	45752	2186	43060	277025;277026	371585	371585			0	
SHSVFTLVMTQTK	1	Unmodified	1477.7599	0.75989966	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	68.912	59.582	2;3	1.0324E-06	32512	160513_QHF_FH_JSI10Kac_6	113.22	95.788			0.67995	0.62126	77.91	2	1	Median	0.41516	0.35811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1136	1.0778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40058000	28004000	12054000	30279000	21181000	9098200	0	0	0	8510800	6823700	1687100	1268600	0	1268600	45753	2621	43061	277027;277028;277029;277030;277031	371586;371587;371588;371589;371590;371591	371591			6	
SHTDQLVLIFAGK	1	Unmodified	1427.7773	0.77726428	5427	Q9UMX0	UBQLN1	Ubiquilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.78	6.96		8							10	5	4	4	5	74.822	69.68	2;3	3.1395E-27	37179	160513_QHF_FH_JSI11Kac_6	202.03	182.27			1.0586	1.0693	16.994	18	10	Median	1.2275	1.0267	13.673	5	4	Median	0.97036	1.1477	14.719	4	0	Linear	1.246	1.2604	20.188	4	3	Median	1.0478	1.0969	14.897	5	3	Median	1397800000	721970000	675870000	304160000	146030000	158140000	661240000	373690000	287560000	162740000	70534000	92204000	269700000	131720000	137970000	45754	5427	43062	277032;277033;277034;277035;277036;277037;277038;277039;277040;277041;277042;277043;277044;277045;277046;277047;277048;277049	371592;371593;371594;371595;371596;371597;371598;371599;371600;371601;371602;371603;371604;371605;371606;371607;371608;371609;371610;371611;371612;371613;371614;371615;371616;371617;371618	371598			27	
SHTFPELAYR	0	Unmodified	1219.5986	0.59857163	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	41.151	40.584	2;3	5.155E-10	35446	160511_QHF_FH_JSI11i_3	111.61	101.6			1.1349	1.1194	22.389	6	2	Median	2.2264	1.8488	NaN	1	1	Median	0.87413	1.0752	1.5051	2	1	Median	1.1005	1.0368	NaN	1	0	Median	1.2763	1.2659	13.195	2	0	Median	459410000	230430000	228980000	35191000	14595000	20596000	262020000	138660000	123360000	75251000	37495000	37755000	86945000	39679000	47266000	45755	4982	43063	277050;277051;277052;277053;277054;277055;277056	371619;371620;371621;371622;371623;371624;371625;371626	371619			7	
SHTFPELAYRK	1	Unmodified	1347.6935	0.69353465	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.153	32.153	3	0.046511	27945	160511_QHF_FH_JSI11i_3	26.412	16.624			0.75806	0.71841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75806	0.71841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56933000	30034000	26899000	0	0	0	0	0	0	56933000	30034000	26899000	0	0	0	45756	4982	43064	277057	371627	371627			1	
SHTILLVQPTK	1	Acetyl (Protein N-term)	1277.7343	0.73433683	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	5.52	6	5	4	3	4	8	12	5	4	9	15	14	13	59.582	52.261	2;3	7.8958E-124	46858	160511_QHF_FH_JSI11i_2	128.86	91.382			1.0308	1.0396	153.13	44	6	Median	1.2085	1.033	7.2393	8	0	Median	0.90772	1.0596	184.21	15	3	Median	1.0022	1.0135	220.01	11	3	Median	0.96646	1.0448	7.7895	10	0	Median	13570000000	6534400000	7035500000	2983200000	1205400000	1777800000	3640400000	1922800000	1717600000	4182300000	1997300000	2185100000	2764000000	1408900000	1355000000	45757	2127	43065	277058;277059;277060;277061;277062;277063;277064;277065;277066;277067;277068;277069;277070;277071;277072;277073;277074;277075;277076;277077;277078;277079;277080;277081;277082;277083;277084;277085;277086;277087;277088;277089;277090;277091;277092;277093;277094;277095;277096;277097;277098;277099;277100;277101;277102;277103;277104;277105;277106;277107;277108	371628;371629;371630;371631;371632;371633;371634;371635;371636;371637;371638;371639;371640;371641;371642;371643;371644;371645;371646;371647;371648;371649;371650;371651;371652;371653;371654;371655;371656;371657;371658;371659;371660;371661;371662;371663;371664;371665;371666;371667;371668;371669;371670;371671;371672;371673;371674;371675;371676;371677;371678;371679;371680;371681;371682;371683;371684;371685;371686;371687;371688;371689;371690;371691;371692;371693;371694;371695;371696;371697;371698	371670			71	
SHTPSPTSPK	1	Unmodified	1037.5142	0.5141733	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.0107	6.1062	3	0.0021181	3744	160511_QHF_FH_JSI12i_3	40.883	26.676			1.6697	1.7194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6697	1.7194	NaN	1	0	Median	64719000	26898000	37821000	0	0	0	0	0	0	0	0	0	64719000	26898000	37821000	45758	1491	43066	277109	371699	371699			1	
SHTSEGAHLDITPNSGAAGNSAGPK	1	Unmodified	2375.1102	0.11017875	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	2	2	2	2	29.163	27.463	3;4	3.7923E-29	22603	160511_QHF_FH_JSI12i_3	165.38	160.51			0.80384	0.90394	30.582	7	3	Median	1.4552	1.2703	55.939	2	1	Median	0.74785	0.92245	2.8672	2	1	Median	0.89373	0.83698	13.929	2	1	Median	0.80384	0.80624	NaN	1	0	Median	896770000	478760000	418000000	59820000	26882000	32938000	199340000	102670000	96669000	515980000	279310000	236670000	121630000	69899000	51730000	45759	3851	43067	277110;277111;277112;277113;277114;277115;277116;277117	371700;371701;371702;371703;371704;371705;371706;371707;371708;371709;371710;371711;371712;371713;371714;371715	371715			16	
SHTVAAQGGINAALGNMEEDNWR	0	Unmodified	2440.119	0.1189693	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	65.886	65.421	3	7.7175E-25	58107	160511_QHF_FH_JSI10i_2	171.42	163.03			0.90977	0.94333	9.9113	5	2	Median	1.2914	1.1389	NaN	1	0	Median	0.7637	0.94333	NaN	1	1	Median	1.1421	1.068	NaN	1	0	Median	0.90232	0.91773	1.144	2	1	Median	250130000	119650000	130470000	33034000	11014000	22021000	70413000	42443000	27970000	79247000	34284000	44963000	67431000	31910000	35521000	45760	1367	43068	277118;277119;277120;277121;277122;277123	371716;371717;371718;371719;371720;371721;371722;371723	371721			8	
SHVATCSKYQNYIMEGVK	2	Acetyl (K)	2156.0031	0.0030598275	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	66.466	56.714	3	0.00035674	30701	160513_QHF_FH_JSI11Kac_6	95.409	87.711			0.55976	0.56245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55976	0.56245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11733000	9798500	1934600	0	0	0	0	0	0	7669800	5735100	1934600	4063400	4063400	0	45761	5644	43069	277124;277125	371724;371725	371724	3514		2	
SHVAVENALGLDQQFAGLDLNSSDNQSGGSTASK	1	Acetyl (Protein N-term)	3458.6186	0.61859797	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	3										1	2		94.46	94.241	3;4	5.6951E-78	85740	160511_QHF_FH_JSI11i_1	93.043	91.025			1.1652	1.1203	5.5723	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92261	1.0711	NaN	1	0	Median	1.1957	1.1578	4.6583	2	0	Median	NaN	NaN	NaN	0	0	Median	368210000	180210000	188010000	0	0	0	208620000	107600000	101010000	159600000	72605000	86993000	0	0	0	45762	154	43070	277126;277127;277128	371726;371727	371726			2	
SHVDLFPK	1	Unmodified	941.49707	0.49706667	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	33.37	32.441	3	0.001796	28309	160511_QHF_FH_JSI10i_2	52.716	34.681			1.0549	1.1048	13.581	4	0	Median	1.0387	0.89429	NaN	1	0	Median	0.85857	1.0499	NaN	1	0	Median	1.1585	1.1625	NaN	1	0	Median	1.0713	1.214	NaN	1	0	Median	306240000	160840000	145400000	44806000	25070000	19736000	76580000	39711000	36868000	129980000	66086000	63891000	54876000	29970000	24905000	45763	3217	43071	277129;277130;277131;277132	371728;371729;371730;371731;371732;371733	371733			6	
SHVEDGDIAGAPASSPEAPPAEQDPVQLK	1	Unmodified	2911.3836	0.38355964	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	56.568	55.962	3	4.0179E-28	50628	160511_QHF_FH_JSI11i_1	141.48	135.32			1.4274	1.4118	10.673	5	4	Median	1.6412	1.3648	NaN	1	1	Median	1.2346	1.4416	NaN	1	1	Median	1.5497	1.532	11.554	2	2	Median	1.1811	1.2375	NaN	1	0	Median	1018900000	422240000	596630000	162970000	51455000	111520000	156130000	56817000	99314000	457410000	196930000	260480000	242360000	117040000	125320000	45764	5213	43072	277133;277134;277135;277136;277137;277138	371734;371735;371736;371737;371738;371739;371740;371741	371734			8	
SHVFFSLINWDDLINK	1	Unmodified	1946.989	0.98904797	96	O00141	SGK1	Serine/threonine-protein kinase Sgk1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.729	88.009	3	0.00029336	50538	160513_QHF_FH_JSI10Kac_6	93.424	69.199			0.89168	1.0713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89168	1.0713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31651000	13913000	17738000	0	0	0	31651000	13913000	17738000	0	0	0	0	0	0	45765	96	43073	277139	371742	371742			1	
SHVLVMSFIGK	1	Unmodified	1216.6638	0.66381443	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.8	5.63			2						6	5	2		1	71.822	63.448	2;3	1.8646E-10	34624	160513_QHF_FH_JSI10Kac_6	125.97	103.73			1.1941	1.0195	41.604	5	5	Median	1.4059	1.2048	23.628	2	2	Median	1.2534	1.4978	64.525	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78272	0.844	NaN	1	1	Median	282720000	128200000	154520000	110820000	46308000	64511000	114310000	51322000	62992000	0	0	0	57585000	30570000	27015000	45766	4382	43074	277140;277141;277142;277143;277144;277145;277146;277147	371743;371744;371745;371746;371747;371748;371749;371750	371749			8	
SHVLVMSFIGK	1	Oxidation (M)	1232.6587	0.65872905	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	56.885	47.019	2;3	0.013715	24923	160513_QHF_FH_JSI9Kac_6	64.297	45.986			2.529	2.7563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.529	2.7563	NaN	1	1	Median	12445000	3837300	8608100	0	0	0	0	0	0	0	0	0	12445000	3837300	8608100	45767	4382	43074	277148;277149	371751;371752	371751		2463	2	
SHVYYFR	0	Unmodified	970.4661	0.4661009	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	16	0									3	1	1		1	32.345	23.717	3	0.048342	13317	160513_QHF_FH_JSI10Kac_6	49.358	38.485			1.1364	1.3493	28.478	3	0	Median	1.774	1.6088	NaN	1	0	Median	1.1364	1.3493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8119	0.92163	NaN	1	0	Median	12600000	6629200	5970500	3538000	1698800	1839200	6332300	3356800	2975600	0	0	0	2729300	1573600	1155800	45768	5627	43075	277150;277151;277152	371753	371753			0	
SHWLGPNYTK	1	Unmodified	1201.588	0.58800695	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							4	2	1	2	30.42	29.534	2;3	0.00010071	24138	160511_QHF_FH_JSI12i_3	63.073	55.428			1.2421	1.2566	24.946	8	3	Median	1.2528	1.0202	25.551	4	3	Median	0.91617	1.0872	NaN	1	0	Median	1.8022	1.7038	NaN	1	0	Median	1.2421	1.2728	2.3433	2	0	Median	554720000	258340000	296370000	180630000	83829000	96801000	54702000	24990000	29712000	109170000	50808000	58359000	210220000	98715000	111500000	45769	2168	43076	277153;277154;277155;277156;277157;277158;277159;277160;277161	371754;371755;371756;371757;371758;371759;371760;371761;371762;371763;371764;371765	371765			12	
SHYADVDPENQNFLLESNLGK	1	Unmodified	2389.1186	0.11861817	4207	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.124	70.238	3	6.8641E-06	60484	160511_QHF_FH_JSI12i_2	66.045	62.947			1.2382	1.2805	57.656	4	0	Median	0.99615	0.85626	NaN	1	0	Median	0.79805	0.96712	NaN	1	0	Median	3.0021	3.0068	NaN	1	0	Median	1.539	1.6953	NaN	1	0	Median	269440000	130130000	139310000	43579000	22248000	21330000	73256000	48275000	24982000	73077000	25242000	47835000	79528000	34361000	45166000	45770	4207	43077	277162;277163;277164;277165	371766;371767;371768;371769;371770;371771;371772	371767			7	
SHYEEGPGK	1	Unmodified	1002.4407	0.44067401	1087	P15954	COX7C	Cytochrome c oxidase subunit 7C, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	2	4	5.6027	5.297	2;3	3.242E-11	3145	160511_QHF_FH_JSI9i_2	157.68	113.87			0.99475	1.0432	16.448	10	0	Median	1.1952	1.0147	5.1713	2	0	Median	0.94842	1.1454	6.1247	2	0	Median	1.2998	1.3206	1.9303	2	0	Median	0.86279	0.92295	11.045	4	0	Median	1969700000	978020000	991720000	326010000	154490000	171520000	380230000	186500000	193730000	610100000	264530000	345580000	653400000	372510000	280890000	45771	1087	43078	277166;277167;277168;277169;277170;277171;277172;277173;277174;277175	371773;371774;371775;371776;371777;371778;371779;371780;371781;371782;371783;371784;371785;371786;371787;371788	371779			16	
SHYFEGVLK	1	Unmodified	1078.5447	0.54474515	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.691	39.232	3	0.02383	33616	160511_QHF_FH_JSI11i_2	29.058	21.838			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45772	1825	43079	277176	371789	371789			1	
SHYKPEQMGK	2	Acetyl (K)	1245.5812	0.58120701	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		22.696	13.582	3	0.0072821	8843	160513_QHF_FH_JSI11Kac_6	56.043	40.153			2.9299	3.0751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9299	3.0751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1891800	433670	1458200	0	0	0	0	0	0	1891800	433670	1458200	0	0	0	45773	1529	43080	277177	371790	371790	1549		1	
SHYKPEQMGK	2	Unmodified	1203.5706	0.57064232	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	7.4556	7.5533	2;3	0.015082	5011	160511_QHF_FH_JSI12i_3	82.749	60.108			1.4746	1.4942	96.395	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4746	1.4942	96.395	2	2	Median	138180000	60789000	77393000	0	0	0	0	0	0	0	0	0	138180000	60789000	77393000	45774	1529	43080	277178;277179	371791;371792	371791			2	
SHYLMHNYPAFMMEMK	1	Unmodified	2028.8719	0.87185142	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			73.027	65.655	3	0.00029216	36058	160513_QHF_FH_JSI10Kac_6	94.01	84.48			0.92523	1.0983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92523	1.0983	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44145000	20581000	23564000	0	0	0	44145000	20581000	23564000	0	0	0	0	0	0	45775	3307	43081	277180;277181	371793;371794	371794			2	
SHYVLYGLVAAMQPR	0	Oxidation (M)	1719.8767	0.87666075	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	5	4	2	3	70.329	61.634	2;3	2.7007E-74	33559	160513_QHF_FH_JSI10Kac_6	221.32	196.97			1.0161	1.0388	14.396	14	3	Median	1.1948	1.0407	19.15	5	2	Median	0.81172	0.96393	12.349	4	1	Median	1.1608	1.1137	9.3109	2	0	Median	0.98784	1.0368	13.349	3	0	Median	2293000000	1164000000	1129000000	581980000	279780000	302200000	996400000	531760000	464630000	291300000	143040000	148270000	423290000	209370000	213920000	45776	2370	43082	277182;277183;277184;277185;277186;277187;277188;277189;277190;277191;277192;277193;277194;277195	371795;371796;371797;371798;371799;371800;371801;371802;371803;371804;371805;371806;371807;371808;371809;371810	371808		1929	15	
SHYVLYGLVAAMQPR	0	Unmodified	1703.8817	0.88174613	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	4	2	2	81.887	74.172	2;3;4	9.6628E-76	39961	160513_QHF_FH_JSI9Kac_6	298.7	274.71			1.0997	0.99145	10.685	10	4	Median	1.1071	0.95234	0.58116	2	0	Median	0.84446	0.97863	9.3468	4	3	Median	1.1263	1.0731	0.70996	2	1	Median	1.1121	1.1685	0.86024	2	0	Median	14886000000	7594000000	7291800000	2394600000	1024300000	1370300000	8579400000	4604500000	3974900000	2818800000	1393400000	1425400000	1093000000	571770000	521230000	45777	2370	43082	277196;277197;277198;277199;277200;277201;277202;277203;277204;277205	371811;371812;371813;371814;371815;371816;371817;371818;371819;371820;371821;371822;371823;371824;371825;371826	371817			16	
SIAAATSALVK	1	Unmodified	1030.6023	0.60226003	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.24	3	5	7				4	3	3	6	6	8	5	50.914	46.349	2	8.0088E-08	38561	160511_QHF_FH_JSI10i_3	125.48	91.683			1.3378	1.3654	60.711	24	17	Median	1.5436	1.3272	47.291	6	5	Median	1.2955	1.5403	33.554	5	2	Median	1.0772	1.0756	75.366	8	6	Median	1.4228	1.5262	80.637	5	4	Median	3473000000	1739800000	1733200000	558810000	255500000	303310000	502500000	264030000	238480000	1245100000	632870000	612270000	1166600000	587430000	579120000	45778	5616;5628	43083	277206;277207;277208;277209;277210;277211;277212;277213;277214;277215;277216;277217;277218;277219;277220;277221;277222;277223;277224;277225;277226;277227;277228;277229;277230	371827;371828;371829;371830;371831;371832;371833;371834;371835;371836;371837;371838;371839;371840;371841;371842;371843;371844;371845;371846;371847;371848;371849;371850;371851;371852;371853;371854;371855;371856;371857	371832			31	
SIAACHNVGLLAHDGQVNEDGQPDLGK	1	Unmodified	2814.3355	0.33550401	3991	Q96BR5	COA7	Cytochrome c oxidase assembly factor 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		53.197	52.418	4	0.020415	43708	160511_QHF_FH_JSI10i_3	23.209	16.334			0.66101	0.70177	41.366	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80783	0.94021	NaN	1	0	Median	0.54087	0.5238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92325000	60712000	31613000	0	0	0	28216000	18120000	10096000	64108000	42592000	21517000	0	0	0	45779	3991	43084	277231;277232	371858;371859;371860	371859			3	
SIAEEQYSDLEK	1	Unmodified	1410.6515	0.65145464	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0				By MS/MS	13	0						2							2	48.928	39.895	2	0.006056	21751	160513_QHF_FH_JSI12Kac_3	61.353	25.02			0.71866	0.74532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71866	0.74532	NaN	1	1	Median	1185900	547280	638630	0	0	0	0	0	0	0	0	0	1185900	547280	638630	45780	475	43085	277233;277234	371861;371862	371862			2	
SIAEGIGPEERR	0	Unmodified	1312.6735	0.67352749	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			24.362	23.107	3	0.00050225	19043	160511_QHF_FH_JSI10i_3	46.069	36.281			1.0307	1.1542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0307	1.1542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21877000	9408200	12469000	0	0	0	21877000	9408200	12469000	0	0	0	0	0	0	45781	1892	43086	277235	371863	371863			1	
SIAELVPK	1	Unmodified	855.50657	0.50656873	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		48.78	48.307	2	0.0018455	41506	160511_QHF_FH_JSI11i_2	96.492	65.202			0.81659	0.87653	54.504	2	2	Median	NaN	NaN	NaN	0	0	Median	0.521	0.5962	NaN	1	1	Median	1.2799	1.2887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106570000	53187000	53380000	0	0	0	26573000	17068000	9505900	79994000	36119000	43875000	0	0	0	45782	1954	43087	277236;277237	371864;371865	371865			2	
SIAFHSAVSLDPIK	1	Unmodified	1483.8035	0.80347903	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.39		7	9						4	5	5	5	5	67.574	65.192	2;3	3.2923E-15	57827	160511_QHF_FH_JSI11i_3	128.22	115.02			0.93559	0.93497	41.789	19	3	Median	0.85883	0.7015	57.933	5	2	Median	0.73231	0.86762	31.064	5	1	Median	1.0971	1.0361	17.059	4	0	Median	0.97443	0.98554	29.059	5	0	Median	3107500000	1475900000	1631600000	397310000	208880000	188430000	576630000	309750000	266880000	820230000	406060000	414170000	1313300000	551230000	762080000	45783	5595	43088	277238;277239;277240;277241;277242;277243;277244;277245;277246;277247;277248;277249;277250;277251;277252;277253;277254;277255;277256;277257	371866;371867;371868;371869;371870;371871;371872;371873;371874;371875;371876;371877;371878;371879;371880;371881;371882;371883;371884;371885;371886;371887;371888;371889;371890;371891;371892	371866			26	
SIAIGSQPVLTVGTTHISK	1	Unmodified	1908.068	0.068026571	4035	Q96DZ1	ERLEC1	Endoplasmic reticulum lectin 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.915	64.625	3	1.6618E-06	55776	160511_QHF_FH_JSI12i_3	94.057	84.305			1.1184	1.148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.148	NaN	1	0	Median	147340000	76898000	70446000	0	0	0	0	0	0	0	0	0	147340000	76898000	70446000	45784	4035	43089	277258	371893;371894	371893			2	
SIAKEGFEK	2	Acetyl (K)	1049.5393	0.53932542	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	14	0							3				1	1	1	42.899	32.857	2	0.018131	19244	160513_QHF_FH_JSI12Kac_4	55.549	30.627			0.80193	0.9409	33.279	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80193	0.9409	NaN	1	0	Median	0.5408	0.53142	NaN	1	0	Median	0.88277	0.95046	NaN	1	0	Median	40370000	24371000	16000000	0	0	0	12047000	6207100	5839500	13001000	8470000	4530700	15323000	9693700	5629300	45785	980	43090	277259;277260;277261	371895;371896;371897	371897	754;759		3	
SIAMQYLELTK	1	Unmodified	1295.6795	0.67952407	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.587	73.793	2	1.392E-05	61864	160511_QHF_FH_JSI10i_3	106.29	96.858			0.94131	0.86551	9.783	4	0	Linear	1.3665	1.1277	NaN	1	0	Median	0.83485	0.93055	NaN	1	0	Median	0.99811	0.92329	NaN	1	0	Median	0.88774	0.92835	NaN	1	0	Median	140050000	71889000	68159000	21782000	10268000	11514000	29146000	17319000	11827000	51167000	22727000	28439000	37954000	21575000	16379000	45786	15	43091	277262;277263;277264;277265	371898;371899;371900;371901;371902;371903	371900			6	
SIAPSIFGGTDMK	1	Unmodified	1322.654	0.6540376	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.07	3.39	3	5	5					1		2	3	5	4	67.634	66.221	2	3.1859E-06	57114	160511_QHF_FH_JSI12i_2	122.42	86.477			1.0081	1.0978	19.791	14	10	Median	1.3126	1.0978	0.64396	2	0	Median	0.87779	0.98308	17.405	3	2	Median	0.90109	0.89658	25.435	5	4	Median	1.0847	1.1213	13.388	4	4	Median	1234700000	642860000	591850000	164380000	74900000	89478000	244310000	141930000	102380000	551620000	286060000	265560000	274400000	139970000	134430000	45787	1410	43092	277266;277267;277268;277269;277270;277271;277272;277273;277274;277275;277276;277277;277278;277279	371904;371905;371906;371907;371908;371909;371910;371911;371912;371913;371914;371915;371916;371917;371918;371919;371920	371907			17	
SIAPSIFGGTDMKK	2	Oxidation (M)	1466.7439	0.74391524	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									1	2	46.469	46.348	2;3	0.00041772	40846	160511_QHF_FH_JSI11i_3	64.52	44.093			1.4239	1.4287	4.5298	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5144	1.4752	NaN	1	0	Median	1.3387	1.3836	NaN	1	0	Median	176170000	78682000	97488000	0	0	0	0	0	0	62838000	23410000	39428000	113330000	55271000	58060000	45788	1410	43093	277280;277281;277282	371921;371922;371923	371921		1062	3	
SIAPSIFGGTDMKK	2	Unmodified	1450.749	0.74900062	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	4	2	1	55.781	54.736	2;3	4.9682E-22	45036	160511_QHF_FH_JSI9i_3	175.28	161.32			0.92583	0.93056	19.116	10	2	Median	1.239	1.0187	2.9904	3	0	Plateau	0.70191	0.82346	26.848	4	2	Median	0.85613	0.82265	15.159	2	0	Median	0.93633	0.94563	NaN	1	0	Median	1231000000	619540000	611440000	472030000	220000000	252040000	556790000	292990000	263800000	117840000	71944000	45896000	84319000	34604000	49715000	45789	1410	43093	277283;277284;277285;277286;277287;277288;277289;277290;277291;277292	371924;371925;371926;371927;371928;371929;371930;371931;371932;371933;371934;371935;371936;371937;371938	371931			14	
SIASAIVNELK	1	Unmodified	1143.6499	0.6499385	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			77.053	75.636	2	0.0018565	62194	160511_QHF_FH_JSI9i_3	60.518	30.264			0.84102	0.83401	21.673	2	0	Median	0.85481	0.71551	NaN	1	0	Median	0.82744	0.97214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41524000	24498000	17026000	14698000	8809900	5887900	26826000	15688000	11138000	0	0	0	0	0	0	45790	4936	43094	277293;277294	371939;371940	371940			1	
SIASEPTEK	1	Unmodified	960.47639	0.47639081	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	11.813	11.549	2	0.00026574	9443	160511_QHF_FH_JSI12i_1	83.948	48.068			1.0241	1.0179	3.3233	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0843	1.0421	NaN	1	0	Median	0.96727	0.9943	NaN	1	0	Median	171760000	86753000	85007000	0	0	0	0	0	0	73195000	36617000	36578000	98565000	50137000	48428000	45791	1873	43095	277295;277296	371941	371941			1	
SIATDVLLGLLK	1	Unmodified	1241.7595	0.75948895	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	102.23	102.15	2	1.9001E-31	84721	160511_QHF_FH_JSI10i_3	190.88	138.89			0.91259	0.9075	6.7788	4	0	Median	1.1288	0.93164	NaN	1	0	Median	0.76499	0.88398	NaN	1	0	Median	0.87461	0.81837	NaN	1	0	Median	0.95221	0.95351	NaN	1	0	Median	371720000	197150000	174560000	32838000	16990000	15848000	70794000	40965000	29830000	73856000	40469000	33387000	194230000	98731000	95500000	45792	3236	43096	277297;277298;277299;277300	371942;371943;371944;371945;371946	371944			5	
SIATLAITTLLK	1	Unmodified	1243.7751	0.77513901	5708;5234	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	96.808	91.988	2	2.9754E-50	88299	160511_QHF_FH_JSI12i_3	193.52	145.67			1.041	0.98609	10.454	7	3	Median	1.1455	0.93356	9.2933	2	1	Median	0.81347	0.94947	8.4364	2	1	Median	0.96232	0.91304	10.885	2	1	Median	1.0926	1.1453	NaN	1	0	Median	7386300000	3842300000	3544000000	1989300000	926960000	1062400000	2621300000	1478800000	1142500000	2256300000	1188000000	1068300000	519310000	248540000	270770000	45793	5708;5234	43097	277301;277302;277303;277304;277305;277306;277307;277308;277309;277310;277311;277312	371947;371948;371949;371950;371951;371952;371953;371954;371955;371956;371957;371958;371959;371960;371961	371958			15	
SIAVAEAACPGITDK	1	Unmodified	1501.7446	0.74464352	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	49.818	49.139	2	2.2709E-16	44326	160511_QHF_FH_JSI10i_1	117.2	90.414			2.1296	1.9079	32.73	4	4	Median	2.3462	1.929	NaN	1	1	Median	1.2285	1.4289	NaN	1	1	Median	1.9329	1.8871	NaN	1	1	Median	3.0795	3.141	NaN	1	1	Median	175870000	57600000	118270000	22135000	6036300	16098000	39484000	16165000	23319000	57838000	19076000	38762000	56413000	16323000	40091000	45794	5206	43098	277313;277314;277315;277316;277317;277318;277319	371962;371963;371964;371965;371966;371967;371968	371967			7	
SICEVLDLER	0	Unmodified	1232.6071	0.60708741	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		67.488	66.724	2	0.0054871	58225	160511_QHF_FH_JSI11i_2	79.974	57.234			0.60037	0.52765	7.0114	3	0	Median	0.60143	0.52765	NaN	1	0	Median	0.42997	0.52539	NaN	1	0	Median	0.60037	0.59447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	143810000	84292000	59521000	33319000	17873000	15445000	54288000	31938000	22350000	56206000	34481000	21725000	0	0	0	45795	1444	43099	277320;277321;277322	371969	371969			0	
SICTTVLELLDK	1	Unmodified	1390.7378	0.73776723	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.81		4	2						5	2	3	3	3	96.813	92.495	2	2.3837E-77	89071	160511_QHF_FH_JSI9i_2	226.71	176.9			0.90693	0.98879	48.609	10	1	Median	0.89422	0.77821	NaN	1	0	Median	0.98172	1.1706	43.96	3	0	Plateau	0.76099	0.76378	86.655	3	1	Median	1.3445	1.4109	24.08	3	0	Plateau	4599600000	2168200000	2431400000	64476000	33260000	31215000	1267900000	665180000	602720000	585380000	326290000	259090000	2681900000	1143400000	1538400000	45796	1288	43100	277323;277324;277325;277326;277327;277328;277329;277330;277331;277332;277333	371970;371971;371972;371973;371974;371975;371976;371977;371978;371979;371980;371981;371982	371973			12	
SIDAGPVDAWTLAFSPDSQYLATGTHVGK	1	Unmodified	3003.4614	0.46141603	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	101.2	101.07	3	1.3298E-99	86888	160511_QHF_FH_JSI12i_2	252.8	242.75			1.1721	1.0583	19.383	3	1	Median	1.1721	1.03	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0374	1.0583	NaN	1	0	Median	1.3007	1.4594	NaN	1	0	Median	839060000	407460000	431600000	130670000	74871000	55794000	0	0	0	436790000	216170000	220620000	271610000	116420000	155190000	45797	4605	43101	277334;277335;277336	371983;371984;371985;371986	371984			4	
SIDDGELLHGILK	1	Unmodified	1408.7562	0.75619449	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	76.443	75.505	3	0.0004557	66245	160511_QHF_FH_JSI11i_2	69.815	53.196			0.76528	0.79332	46.364	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58252	0.57157	NaN	1	1	Median	1.0054	1.1011	NaN	1	0	Median	19887000	12859000	7028200	0	0	0	0	0	0	11514000	8831700	2682100	8373500	4027400	4346100	45798	610	43102	277337;277338	371987;371988	371988			2	
SIDFPLTK	1	Unmodified	919.50148	0.50148335	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.74	4	4					2	1		2	3	4	2	62.783	59.267	2	0.0013022	52102	160511_QHF_FH_JSI9i_2	91.318	48.252			0.92943	0.95002	25.887	11	0	Median	1.1147	0.94703	0.055403	2	0	Median	0.79432	0.96388	16.552	3	0	Plateau	0.93059	0.93074	42.951	4	0	Median	0.88416	0.96232	0.80563	2	0	Median	1281800000	657320000	624470000	267560000	129020000	138540000	335940000	196520000	139420000	380780000	187740000	193040000	297510000	144050000	153460000	45799	575	43103	277339;277340;277341;277342;277343;277344;277345;277346;277347;277348;277349	371989;371990;371991;371992;371993;371994;371995;371996;371997;371998;371999;372000;372001;372002;372003;372004;372005;372006;372007;372008	372002			20	
SIDGSIVLPLAR	0	Unmodified	1239.7187	0.71868677	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	78.561	77.643	2	0.0003487	68208	160511_QHF_FH_JSI11i_2	89.679	71.367			1.1601	1.1987	3.252	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1778	1.1715	NaN	1	1	Median	1.1427	1.2266	NaN	1	1	Median	56214000	29195000	27020000	0	0	0	0	0	0	30287000	15187000	15101000	25927000	14008000	11919000	45800	4868	43104	277350;277351;277352;277353	372009;372010;372011;372012	372011			4	
SIDGTADDEDEGVPTDQAIR	0	Unmodified	2102.924	0.92400069	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.01	46.33	2	0	42098	160511_QHF_FH_JSI12i_1	407.92	391.98			1.1125	1.102	10.139	4	0	Median	1.134	0.9269	NaN	1	0	Median	0.94242	1.0868	NaN	1	0	Median	1.1952	1.1709	NaN	1	0	Median	1.0914	1.1174	NaN	1	0	Median	307610000	158560000	149040000	52828000	23112000	29716000	85165000	49818000	35347000	100350000	53509000	46838000	69265000	32123000	37142000	45801	4988	43105	277354;277355;277356;277357	372013;372014;372015;372016;372017;372018;372019;372020;372021	372016			9	
SIDISATIPK	1	Unmodified	1043.5863	0.58627561	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	58.446	57.788	2	0.00014929	52573	160511_QHF_FH_JSI12i_1	83.456	50.615			1.5081	1.5508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5081	1.5508	NaN	1	0	Median	71929000	31750000	40179000	0	0	0	0	0	0	0	0	0	71929000	31750000	40179000	45802	2594	43106	277358	372022	372022			1	
SIDIWSVGCILAEMLSNRPIFPGK	1	Unmodified	2702.3924	0.39241395	1309;1289	P27361;P28482	MAPK3;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 1	no	no	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			101.79	94.914	3;4	1.9065E-77	56733	160513_QHF_FH_JSI10Kac_6	204.83	163.31			0.89527	1.0282	5.0663	3	1	Median	1.178	1.0282	NaN	1	1	Median	0.85135	1.0175	7.1138	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	882690000	486020000	396670000	35624000	14547000	21077000	847070000	471480000	375590000	0	0	0	0	0	0	45803	1289;1309	43107	277359;277360;277361	372023;372024;372025;372026;372027	372027			5	
SIDLIQK	1	Unmodified	815.47527	0.4752686	1663	P49585	PCYT1A	Choline-phosphate cytidylyltransferase A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.412	39.109	2	0.023013	35117	160511_QHF_FH_JSI11i_1	58.981	18.878			0.35761	0.34645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35761	0.34645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12956000	8601400	4354900	0	0	0	0	0	0	12956000	8601400	4354900	0	0	0	45804	1663	43108	277362	372028	372028			1	
SIDLKDK	2	Acetyl (K)	859.4651	0.46509784	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	39.138	29.828	2	0.0014391	17095	160513_QHF_FH_JSI12Kac_3	111.95	29.276			0.65408	0.73632	36.888	6	0	Median	NaN	NaN	NaN	0	0	Median	0.74247	0.89175	14.09	2	0	Median	0.41971	0.414	12.446	2	0	Median	0.67613	0.73632	8.3763	2	0	Median	562470000	341880000	220590000	0	0	0	153620000	80819000	72805000	253550000	166110000	87441000	155290000	94950000	60344000	45805	980	43109	277363;277364;277365;277366;277367;277368	372029;372030;372031;372032;372033;372034;372035	372033	760		7	
SIDLPIQSSLCR	0	Unmodified	1387.7129	0.71294946	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	70.759	70.038	2	0.00016059	61314	160511_QHF_FH_JSI11i_2	83	57.614			0.87343	0.87302	14.709	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65565	0.73787	NaN	1	0	Median	0.87343	0.87302	NaN	1	0	Median	0.90787	0.98919	NaN	1	0	Median	122900000	72111000	50784000	0	0	0	32610000	23600000	9009400	52791000	28358000	24433000	37495000	20153000	17342000	45806	723	43110	277369;277370;277371	372036;372037;372038;372039	372039			4	
SIDLQEPLQK	1	Unmodified	1169.6292	0.62920306	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	52.013	51.341	2	2.3532E-09	45656	160511_QHF_FH_JSI9i_1	129.38	114.71			1.0287	0.95537	16.757	4	2	Median	1.2016	0.9819	NaN	1	0	Median	0.785	0.92955	NaN	1	1	Median	0.88077	0.87113	NaN	1	0	Median	1.2506	1.2765	NaN	1	1	Median	484620000	256080000	228550000	127520000	53544000	73974000	111090000	71075000	40013000	129310000	69252000	60057000	116710000	62204000	54502000	45807	5485	43111	277372;277373;277374;277375;277376	372040;372041;372042;372043;372044;372045	372045			6	
SIDMSWDSVTMK	1	Unmodified	1398.6159	0.61593753	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							3	2	3	2	74.047	73.29	2	7.2045E-16	66721	160511_QHF_FH_JSI11i_1	159.83	117.23			1.0739	1.0587	29.336	10	3	Median	1.2405	1.0069	44.971	3	1	Plateau	0.98967	1.1747	13.013	2	0	Median	1.0905	1.0605	8.475	3	2	Median	1.1348	1.2158	19.804	2	0	Median	1097000000	543400000	553600000	161290000	74779000	86510000	298220000	141960000	156260000	408580000	218010000	190570000	228910000	108660000	120250000	45808	5315	43112	277377;277378;277379;277380;277381;277382;277383;277384;277385;277386	372046;372047;372048;372049;372050;372051;372052;372053;372054;372055;372056;372057;372058;372059;372060;372061;372062;372063;372064;372065;372066;372067;372068	372048			23	
SIDNGIFVQLVQANSPASLVGLR	0	Unmodified	2397.3016	0.30160833	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							1	2	1	2	101.99	101.9	3	6.7603E-17	88747	160511_QHF_FH_JSI12i_3	128.88	120.28			0.91655	0.95521	12.769	6	0	Median	0.96734	0.83356	NaN	1	0	Median	0.73964	0.86061	11.533	2	0	Median	1.001	1.013	NaN	1	0	Median	0.99466	1.0468	9.731	2	0	Median	1264000000	636560000	627400000	263710000	133150000	130550000	366530000	218380000	148150000	195710000	94930000	100780000	438010000	190090000	247910000	45809	151	43113	277387;277388;277389;277390;277391;277392	372069;372070	372070			2	
SIDPALSMLIK	1	Unmodified	1186.6631	0.66314572	4729	Q9H501	ESF1	ESF1 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.162	86.172	2	0.049879	74464	160511_QHF_FH_JSI12i_2	43.512	15.77			0.35709	0.36998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35709	0.36998	NaN	1	1	Median	5817300	4431600	1385700	0	0	0	0	0	0	0	0	0	5817300	4431600	1385700	45810	4729	43114	277393	372071	372071			1	
SIDQFANLVLHQTVER	0	Unmodified	1868.9745	0.97446054	247	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	96.117	96.075	3	0.0019502	85357	160511_QHF_FH_JSI11i_3	40.962	36.436			0.936	0.91483	28.241	4	1	Median	NaN	NaN	NaN	0	0	Median	0.53158	0.64802	NaN	1	1	Median	1.1238	1.0519	27.934	2	0	Median	0.94239	0.96933	NaN	1	0	Median	281900000	142320000	139580000	0	0	0	27007000	15632000	11375000	156530000	76647000	79881000	98364000	50043000	48321000	45811	247	43115	277394;277395;277396;277397	372072;372073;372074;372075;372076	372073			4	
SIDSFGQVSHPK	1	Unmodified	1300.6412	0.64116473	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.449	30.133	3	0.050098	25444	160511_QHF_FH_JSI12i_2	26.112	19.224			0.83068	0.94874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83068	0.94874	NaN	1	1	Median	48221000	26975000	21246000	0	0	0	0	0	0	0	0	0	48221000	26975000	21246000	45812	3378	43116	277398	372077	372077			1	
SIDSNPYDTDK	1	Unmodified	1253.5412	0.54117591	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	25.357	23.178	2	2.0008E-14	20293	160511_QHF_FH_JSI11i_1	155.06	115.01			0.90004	0.89225	4.3038	5	1	Median	1.0629	0.87059	NaN	1	0	Median	0.82771	0.95806	NaN	1	0	Median	0.92075	0.89932	1.1161	2	1	Median	0.82548	0.85734	NaN	1	0	Median	415960000	211310000	204650000	106110000	48201000	57905000	100080000	57284000	42791000	114900000	52235000	62666000	94877000	53588000	41290000	45813	1586	43117	277399;277400;277401;277402;277403;277404	372078;372079;372080;372081;372082;372083;372084;372085;372086;372087	372079			10	
SIDTGMGLER	0	Unmodified	1077.5125	0.51245874	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			2	4	3	3	40.386	37.179	2	1.5243E-11	31805	160511_QHF_FH_JSI12i_2	153.05	85.064			0.95015	1.0163	11.536	12	0	Median	1.1922	0.99916	10.171	2	0	Median	0.87775	1.0572	3.9628	4	0	Median	0.95157	0.91981	5.3624	3	0	Median	0.94902	1.0293	21.552	3	0	Median	3212500000	1584000000	1628400000	615280000	274960000	340320000	930790000	478200000	452590000	969040000	472560000	496480000	697350000	358310000	339040000	45814	1664	43118	277405;277406;277407;277408;277409;277410;277411;277412;277413;277414;277415;277416	372088;372089;372090;372091;372092;372093;372094;372095;372096;372097;372098;372099;372100;372101;372102;372103;372104;372105;372106;372107;372108	372091			20	
SIDTGMGLER	0	Oxidation (M)	1093.5074	0.50737336	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0				By MS/MS	9.67	5.44		1				1	1						3	31.246	22.484	2	0.017029	31766	160511_QHF_FH_JSI12i_2	53.756	31.625			0.91203	0.96088	13.142	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91203	0.96088	13.142	2	0	Median	4715400	2380600	2334800	0	0	0	0	0	0	0	0	0	4715400	2380600	2334800	45815	1664	43118	277417;277418;277419	372109;372110;372111	372109		1351	3	
SIEALLEAGQAR	0	Unmodified	1256.6725	0.67246486	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.464	67.168	2	0.0015814	58094	160511_QHF_FH_JSI12i_3	63.694	33.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45816	5213	43119	277420	372112	372112			1	
SIEAVHEDIR	0	Unmodified	1167.5884	0.58840088	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.13		4						8		3	2	4	3	32.073	25.012	2;3	2.514E-07	21797	160511_QHF_FH_JSI9i_2	114.51	91.494			1.1044	1.163	44.19	10	4	Median	1.8213	1.5393	26.293	3	1	Median	0.95065	1.1546	0.3553	2	1	Median	0.93241	0.92484	88.704	3	2	Median	1.1044	1.2106	5.0144	2	0	Median	220770000	104090000	116690000	59777000	24146000	35631000	72470000	35801000	36669000	11354000	5391300	5962400	77174000	38751000	38423000	45817	1241	43120	277421;277422;277423;277424;277425;277426;277427;277428;277429;277430;277431;277432	372113;372114;372115;372116;372117;372118;372119;372120;372121;372122	372116			10	
SIEDFAHSSFQMALSK	1	Unmodified	1796.8403	0.84033482	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	1	5	82.007	81.395	2;3	2.2448E-35	70542	160511_QHF_FH_JSI12i_3	241.52	200.24			1.1643	1.318	23.998	9	6	Median	2.0734	1.8675	NaN	1	1	Median	0.8401	1.0262	13.572	2	1	Median	1.3672	1.3855	NaN	1	1	Median	1.1643	1.318	21.818	5	3	Median	770520000	387120000	383400000	46907000	18549000	28357000	192560000	105830000	86731000	63004000	29750000	33254000	468050000	232990000	235060000	45818	576	43121	277433;277434;277435;277436;277437;277438;277439;277440;277441	372123;372124;372125;372126;372127;372128;372129;372130;372131;372132;372133	372133			11	
SIEDMTEEAFQK	1	Unmodified	1426.6286	0.62861071	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	62.918	62.21	2	1.6571E-05	55137	160511_QHF_FH_JSI9i_1	117.02	111.3			1.2505	1.2834	26.652	6	6	Median	1.3083	1.0714	16.662	2	2	Median	1.2151	1.4054	NaN	1	1	Median	1.4534	1.4238	NaN	1	1	Median	0.94994	1.0013	43.958	2	2	Median	1326900000	654100000	672750000	382990000	191270000	191710000	203760000	86184000	117580000	254650000	111120000	143530000	485460000	265530000	219930000	45819	1060	43122	277442;277443;277444;277445;277446;277447	372134;372135;372136;372137;372138;372139;372140;372141	372141			8	
SIEDMTVK	1	Unmodified	921.44773	0.44773322	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		30.983	30.7	2	0.00096024	27350	160511_QHF_FH_JSI10i_1	95.909	26.712			2.0893	2.2002	103.82	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90662	1.0559	NaN	1	0	Median	4.8147	4.5845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154630000	79426000	75199000	0	0	0	115000000	72159000	42845000	39620000	7267000	32353000	0	0	0	45820	1360	43123	277448;277449;277450	372142;372143;372144	372143			3	
SIEEIVR	0	Unmodified	844.46543	0.46543219	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		44.307	34.089	2	0.015961	19389	160513_QHF_FH_JSI10Kac_4	65.676	7.4824			0.97081	0.95147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97081	0.95147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13696000	6742500	6953500	0	0	0	0	0	0	13696000	6742500	6953500	0	0	0	45821	1488	43124	277451;277452	372145;372146	372145			2	
SIEEQLGTEIKPIPSNIDK	2	Unmodified	2110.1158	0.11576462	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	2	2	3	68.493	67.749	3	6.366E-14	61653	160511_QHF_FH_JSI11i_1	150.29	110.42			1.0313	0.9766	12.042	9	0	Median	1.1433	0.94315	4.9295	2	0	Median	0.81504	0.97328	4.8417	2	0	Median	0.9647	0.97503	24.298	2	0	Median	1.0313	1.1394	9.8446	3	0	Median	1835900000	918280000	917650000	243450000	97301000	146150000	514540000	273610000	240930000	593630000	303670000	289950000	484310000	243690000	240610000	45822	1271	43125	277453;277454;277455;277456;277457;277458;277459;277460;277461	372147;372148;372149;372150;372151;372152;372153;372154;372155;372156;372157;372158;372159;372160	372147			14	
SIEEQQK	1	Unmodified	860.42396	0.42396131	5381	Q9UKV8	AGO2	Protein argonaute-2	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	9.1914	8.8882	2	0.027514	6612	160511_QHF_FH_JSI10i_1	53.554	5.98			0.71953	0.80809	10.17	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63016	0.75202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82156	0.86834	NaN	1	0	Median	470460000	294370000	176090000	0	0	0	221750000	145950000	75792000	0	0	0	248710000	148410000	100300000	45823	5381	43126	277462;277463	372161	372161			1	
SIEEVLR	0	Unmodified	844.46543	0.46543219	3972	Q96AX1	VPS33A	Vacuolar protein sorting-associated protein 33A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.188	38.232	2	0.0089406	32364	160511_QHF_FH_JSI12i_2	81.297	20.509			2.5806	2.9415	117.36	4	0	Median	11.769	9.8466	NaN	1	0	Median	5.1542	6.3056	NaN	1	0	Median	1.292	1.3722	NaN	1	0	Median	0.78644	0.86088	NaN	1	0	Median	155460000	42608000	112850000	35391000	4149600	31241000	58420000	7618800	50801000	39087000	17684000	21403000	22562000	13156000	9405600	45824	3972	43127	277464;277465;277466;277467	372162;372163	372162			2	
SIEGTADDEEEGVSPDTAIR	0	Unmodified	2089.9288	0.92875172	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.677	47.997	2	0	43583	160511_QHF_FH_JSI12i_1	458.61	444.8			1.0241	1.032	4.7623	4	0	Median	1.2509	1.0325	NaN	1	0	Median	0.87592	1.0316	NaN	1	0	Median	1.1064	1.088	NaN	1	0	Median	0.9479	0.96848	NaN	1	0	Median	382290000	189660000	192630000	89303000	35981000	53321000	89922000	51362000	38559000	117270000	58119000	59153000	85790000	44194000	41596000	45825	2789	43128	277468;277469;277470;277471	372164;372165;372166;372167;372168;372169;372170;372171	372167			8	
SIEHLDK	1	Unmodified	840.43413	0.43413207	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		11.412	10.85	2	0.009356	8228	160511_QHF_FH_JSI11i_2	69.198	21.455			0.27615	0.24294	NaN	1	1	Median	0.27615	0.24294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129110000	109750000	19359000	129110000	109750000	19359000	0	0	0	0	0	0	0	0	0	45826	5556	43129	277472;277473	372172;372173	372173			2	
SIEIESSDVIR	0	Acetyl (Protein N-term)	1288.6511	0.65106071	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	68.966	68.461	2	4.5635E-05	62335	160511_QHF_FH_JSI12i_1	140.45	98.337			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45827	2801	43130	277474;277475	372174;372175	372175			2	
SIEIPRPVDGVEVPGCGK	1	Unmodified	1907.9775	0.977497	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	5.2	4.92		1	3					1				3	2	68.701	66.328	2;3	1.4937E-07	59352	160511_QHF_FH_JSI11i_3	122.01	111.73			0.93148	0.88918	32.161	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90875	0.88918	5.2892	3	0	Plateau	1.4482	1.4814	21.961	2	1	Median	894880000	447240000	447640000	0	0	0	0	0	0	590660000	311270000	279380000	304230000	135970000	168260000	45828	1274	43131	277476;277477;277478;277479;277480	372176;372177;372178;372179;372180;372181;372182	372177			6	
SIELFYK	1	Unmodified	898.48002	0.48001963	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.61	3	4	2				1	4	2	2	3	6	5	63.419	58.542	2	0.0029535	50175	160511_QHF_FH_JSI12i_2	107.66	57.619			0.98324	0.99775	24.76	16	2	Median	1.1349	0.97297	3.9539	2	0	Median	0.81802	0.98471	21.642	3	0	Median	1.0249	1.0096	30.544	6	2	Median	1.0125	1.0014	25.244	5	0	Median	1219600000	666840000	552750000	195200000	99516000	95687000	274200000	174000000	100200000	433590000	230720000	202870000	316600000	162600000	154000000	45829	2094	43132	277481;277482;277483;277484;277485;277486;277487;277488;277489;277490;277491;277492;277493;277494;277495;277496	372183;372184;372185;372186;372187;372188;372189;372190;372191;372192;372193;372194;372195;372196;372197;372198;372199;372200;372201;372202;372203;372204;372205;372206;372207;372208;372209;372210;372211	372187			29	
SIEPYLK	1	Unmodified	848.46437	0.46436956	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								3	2	1	37.368	36.503	2	0.0082634	31036	160511_QHF_FH_JSI11i_2	73.039	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45830	1196	43133	277497;277498;277499;277500;277501;277502	372212;372213;372214;372215;372216;372217	372215			6	
SIEVIENR	0	Unmodified	958.50836	0.50835964	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.62	3	2					2	3		2	3	1	4	34.242	29.038	2	8.0802E-05	24670	160511_QHF_FH_JSI12i_2	132.08	73.103			0.96861	1.0804	13.198	10	0	Median	1.289	1.0975	24.95	2	0	Median	0.8868	1.0722	7.9796	3	0	Median	0.95264	0.92693	NaN	1	0	Median	0.99304	1.0971	13.676	4	0	Median	1066200000	539480000	526740000	274450000	113880000	160570000	180140000	106910000	73225000	90060000	50935000	39126000	521580000	267760000	253820000	45831	1649	43134	277503;277504;277505;277506;277507;277508;277509;277510;277511;277512	372218;372219;372220;372221;372222;372223;372224;372225;372226;372227;372228;372229;372230;372231;372232;372233;372234	372220			17	
SIEVYSAYNNVK	1	Unmodified	1385.6827	0.68269519	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		6.33	6.13		2						1		2		1		51.26	47.191	2	4.4831E-05	40726	160511_QHF_FH_JSI11i_2	111.06	63.859			1.3231	1.2235	10.407	2	2	Median	1.5481	1.3169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1309	1.1367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49304000	20118000	29185000	22180000	7030800	15149000	0	0	0	27124000	13088000	14036000	0	0	0	45832	4235	43135	277513;277514;277515	372235;372236;372237	372237			3	
SIFASPESVTGK	1	Unmodified	1221.6241	0.62411768	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.43	49.903	2	0.0018949	43105	160511_QHF_FH_JSI11i_2	73.067	45.324			0.4551	0.47271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4551	0.47271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22687000	15034000	7652500	0	0	0	0	0	0	22687000	15034000	7652500	0	0	0	45833	588	43136	277516	372238	372238			1	
SIFDFSALK	1	Unmodified	1026.5386	0.53859714	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.52	3	5	5					4	4	4	6	6	5	84.096	80.243	2	2.5765E-08	72357	160511_QHF_FH_JSI12i_3	149.65	57.747			0.98425	1.0266	15.847	19	2	Median	1.1988	1.0161	6.6689	4	0	Median	0.85733	1.0211	21.001	6	2	Median	1.0316	1.0334	11.479	4	0	Median	0.85558	0.94847	20.476	5	0	Median	4792000000	2294500000	2497500000	723840000	311410000	412440000	1053900000	534560000	519380000	1606100000	757090000	849000000	1408100000	691410000	716720000	45834	1460	43137	277517;277518;277519;277520;277521;277522;277523;277524;277525;277526;277527;277528;277529;277530;277531;277532;277533;277534;277535;277536;277537	372239;372240;372241;372242;372243;372244;372245;372246;372247;372248;372249;372250;372251;372252;372253;372254;372255;372256;372257;372258;372259;372260;372261;372262;372263;372264;372265;372266;372267;372268;372269;372270;372271;372272;372273;372274;372275;372276;372277;372278	372275			40	
SIFDGFR	0	Unmodified	840.413	0.41300269	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		56.137	55.327	2	0.0572	48572	160511_QHF_FH_JSI9i_2	41.502	25.348			1.8636	2.4025	21.733	3	0	Plateau	1.8636	1.5959	NaN	1	0	Median	1.7924	2.2241	NaN	1	0	Median	2.4188	2.4025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92230000	36313000	55917000	20661000	7809900	12851000	28086000	9693300	18393000	43483000	18810000	24673000	0	0	0	45835	618	43138	277538;277539;277540	372279;372280	372279			2	
SIFDHIK	1	Unmodified	858.45995	0.45995289	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							3	3	2	2	37.313	36.45	2;3	0.0016197	31006	160511_QHF_FH_JSI12i_3	89.55	10.434			0.98263	1.004	21.354	10	0	Median	1.3077	1.0537	13.955	3	0	Median	0.74879	0.87388	19.445	3	0	Median	1.21	1.1786	10.321	2	0	Median	0.72411	0.73517	1.8066	2	0	Median	2212400000	1057900000	1154500000	354320000	175260000	179050000	395030000	198140000	196890000	369310000	163200000	206110000	1093700000	521310000	572410000	45836	5124	43139	277541;277542;277543;277544;277545;277546;277547;277548;277549;277550	372281;372282;372283;372284;372285;372286;372287;372288;372289;372290;372291;372292;372293;372294;372295;372296;372297	372296			17	
SIFDHIKLPQASK	2	Acetyl (K)	1524.83	0.83002813	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.498	67.174	3	0.0010972	36642	160513_QHF_FH_JSI11Kac_6	73.834	61.208			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45837	5124	43140	277551	372298	372298	3315		1	
SIFELWGHGQSPEELYSSLK	1	Unmodified	2306.1219	0.12191263	3269	Q7Z4G4	TRMT11	tRNA (guanine(10)-N2)-methyltransferase homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.64	99.658	3	5.0367E-05	86253	160511_QHF_FH_JSI12i_3	72.585	53.032			1.7638	1.8067	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7638	1.8067	NaN	1	1	Median	75158000	29991000	45166000	0	0	0	0	0	0	0	0	0	75158000	29991000	45166000	45838	3269	43141	277552	372299	372299			1	
SIFEMYEPSELESSHLTDQDNEIR	0	Unmodified	2868.276	0.27598303	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.723	84.551	3	8.4502E-09	73430	160511_QHF_FH_JSI12i_3	74.561	72.217			0.65041	0.66538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65041	0.66538	NaN	1	0	Median	16548000	8198900	8349200	0	0	0	0	0	0	0	0	0	16548000	8198900	8349200	45839	3212	43142	277553	372300	372300			1	
SIFENLMK	1	Unmodified	980.5001	0.50010314	2452	Q13614	MTMR2	Myotubularin-related protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	66.566	66.418	2	0.0012187	58992	160511_QHF_FH_JSI11i_3	92.439	57.632			1.2749	1.2272	44.271	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98718	0.89734	NaN	1	0	Median	1.6466	1.6783	NaN	1	1	Median	115400000	42833000	72565000	0	0	0	0	0	0	51911000	19338000	32573000	63487000	23495000	39992000	45840	2452	43143	277554;277555	372301;372302	372301			2	
SIFETYMSK	1	Unmodified	1104.5161	0.51614714	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.766	55.22	2	0.023473	46181	160511_QHF_FH_JSI10i_3	43.442	17.058			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45841	3465	43144	277556	372303	372303			1	
SIFGEDALANVSIEK	1	Unmodified	1591.8094	0.80935227	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	2	4	82.108	81.571	2	1.4278E-21	70749	160511_QHF_FH_JSI12i_3	141.38	82.403			0.84546	0.91655	10.327	8	1	Median	1.1463	0.97475	NaN	1	0	Median	0.77035	0.92665	17.372	2	0	Median	0.86296	0.84055	15.205	2	0	Median	0.84326	0.89754	4.1433	3	1	Median	807360000	442410000	364950000	158640000	76960000	81683000	239880000	142110000	97771000	223780000	123070000	100710000	185050000	100270000	84786000	45842	1804	43145	277557;277558;277559;277560;277561;277562;277563;277564;277565	372304;372305;372306;372307;372308;372309;372310;372311;372312;372313;372314;372315;372316;372317;372318;372319;372320	372320			17	
SIFLFLDR	0	Unmodified	1009.5597	0.55966693	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	89.741	85.344	2	3.1622E-07	45075	160513_QHF_FH_JSI10Kac_6	143.89	78.635			0.92721	0.86968	24.411	8	0	Median	1.2042	1.0064	23.279	2	0	Median	0.69674	0.82054	3.7053	2	0	Median	1.2186	1.1498	36.863	2	0	Median	0.82382	0.82706	25.591	2	0	Median	655850000	357880000	297970000	114420000	46161000	68258000	318640000	191640000	127000000	119850000	67194000	52656000	102940000	52884000	50058000	45843	2456;2457	43146	277566;277567;277568;277569;277570;277571;277572;277573	372321;372322;372323;372324;372325;372326;372327;372328;372329	372328			9	
SIFLVAHR	0	Unmodified	941.54469	0.54468557	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	47.98	38.808	2;3	0.00034791	21345	160513_QHF_FH_JSI10Kac_6	84.568	45.605			0.88916	0.93882	9.8831	6	2	Median	1.2258	1.0493	13.883	2	1	Median	0.77585	0.92054	0.93508	2	1	Median	0.98382	0.97257	NaN	1	0	Median	0.80361	0.86872	NaN	1	0	Median	357530000	190970000	166560000	88941000	46079000	42862000	213400000	115570000	97835000	33747000	17626000	16122000	21442000	11696000	9745600	45844	2596	43147	277574;277575;277576;277577;277578;277579	372330;372331;372332;372333;372334;372335	372334			6	
SIFLVAHRK	1	Unmodified	1069.6396	0.63964859	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	36.724	27.831	3	0.0012585	15525	160513_QHF_FH_JSI9Kac_6	74.301	24.878			1.0312	1.2293	12.882	3	1	Plateau	1.1532	0.95477	NaN	1	1	Median	1.0312	1.2293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0088	1.1313	NaN	1	0	Median	17018000	7405800	9612200	5542000	2433100	3108800	8485700	3263400	5222300	0	0	0	2990200	1709200	1281000	45845	2596	43148	277580;277581;277582;277583	372336;372337;372338;372339	372336			3	
SIFQVFTHLPGK	1	Unmodified	1372.7503	0.75032125	3683	Q8TAG9	EXOC6	Exocyst complex component 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		82.787	82.164	3	4.6231E-05	73066	160511_QHF_FH_JSI11i_3	69.602	60.314			0.68878	0.7106	2.5275	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64148	0.72342	NaN	1	0	Median	0.73957	0.69802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57513000	32690000	24822000	0	0	0	19956000	12229000	7727800	37556000	20462000	17095000	0	0	0	45846	3683	43149	277584;277585	372340;372341	372340			2	
SIFSAVLDELK	1	Unmodified	1220.6653	0.66525421	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	101.53	101.43	2	1.1783E-47	90536	160511_QHF_FH_JSI11i_3	214.58	131.58			0.98818	1.0028	8.4307	8	0	Median	1.2773	1.0585	3.2903	2	0	Median	0.83554	0.96774	0.68701	2	0	Median	1.1121	1.095	5.0851	2	0	Median	0.84222	0.90981	5.7378	2	0	Median	15912000000	8022900000	7888900000	2718600000	1205200000	1513400000	4636600000	2503400000	2133200000	4808400000	2294300000	2514100000	3748200000	2019900000	1728300000	45847	1372	43150	277586;277587;277588;277589;277590;277591;277592;277593	372342;372343;372344;372345;372346;372347;372348	372342			7	
SIFSESR	0	Unmodified	824.40283	0.40283194	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	21.272	20.871	2	0.037218	17613	160511_QHF_FH_JSI11i_3	48.756	16.285			0.97774	0.91888	12.041	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98846	1.1513	NaN	1	0	Median	0.97774	0.91888	NaN	1	0	Median	0.96034	0.95601	NaN	1	0	Median	159930000	85413000	74512000	0	0	0	24729000	12347000	12382000	74491000	38984000	35507000	60706000	34082000	26623000	45848	2494	43151	277594;277595;277596	372349;372350	372349			2	
SIFSGIGSTAEPVSQSTTSDYQWDVSR	0	Unmodified	2904.3414	0.34136048	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.756	2	3	2							1	2	2	2	85.06	84.647	3	9.693E-32	73536	160511_QHF_FH_JSI12i_3	145.63	139.19			0.9768	1.0863	13.718	7	1	Median	1.5398	1.3296	NaN	1	0	Median	0.85146	1.0224	17.91	2	1	Median	1.0787	1.0265	12.817	2	0	Median	0.9818	1.0265	8.002	2	0	Median	398200000	198330000	199870000	49018000	24426000	24592000	97513000	53050000	44463000	155740000	70965000	84778000	95927000	49887000	46040000	45849	3323	43152	277597;277598;277599;277600;277601;277602;277603	372351;372352;372353;372354;372355;372356;372357;372358;372359;372360;372361;372362;372363;372364	372364			14	
SIFSLDTPEQYQEAFQK	1	Unmodified	2029.9633	0.96328673	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.575	3	7	1							2	2	4	3	88.644	88.156	2;3	1.7013E-53	78271	160511_QHF_FH_JSI10i_2	225.23	211.55			0.88591	0.86526	17.53	11	7	Median	0.99313	0.85505	10.443	2	2	Median	0.63793	0.75098	20.032	2	1	Median	0.91224	0.89294	19.065	4	3	Median	0.88591	0.96022	20.438	3	1	Median	335690000	174150000	161530000	56658000	25763000	30895000	55096000	34339000	20756000	131910000	67399000	64508000	92026000	46654000	45373000	45850	3736	43153	277604;277605;277606;277607;277608;277609;277610;277611;277612;277613;277614	372365;372366;372367;372368;372369;372370;372371;372372;372373;372374;372375;372376;372377;372378;372379	372378			15	
SIFSPVVK	1	Unmodified	875.51165	0.5116541	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	50.627	49.712	2	0.0014643	43632	160511_QHF_FH_JSI11i_3	89.142	52.122			0.99796	1.0992	18.774	8	0	Median	1.2335	1.0263	23.3	2	0	Median	0.8195	0.98914	24.758	2	0	Median	1.1033	1.0777	22.467	2	0	Median	1.1129	1.1874	20.756	2	0	Median	1127300000	577130000	550190000	161730000	84137000	77594000	241000000	144940000	96056000	364020000	188390000	175620000	360580000	159660000	200920000	45851	5161	43154	277615;277616;277617;277618;277619;277620;277621;277622	372380;372381;372382;372383;372384;372385;372386;372387	372380			8	
SIFTPTNQIR	0	Acetyl (Protein N-term)	1217.6404	0.64043645	5569	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.533	67.966	2	1.442E-06	61770	160511_QHF_FH_JSI12i_1	117.81	87.241			0.34704	0.3405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34704	0.3405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	251500000	170730000	80766000	0	0	0	0	0	0	251500000	170730000	80766000	0	0	0	45852	5569	43155	277623;277624;277625;277626	372388;372389;372390;372391	372389			4	
SIFVFTHVLVPVWIIHYYMK	1	Unmodified	2491.349	0.34901622	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			98.013	91.155	3;4	4.7608E-45	53661	160513_QHF_FH_JSI10Kac_6	178.66	151.39			0.81322	0.95268	9.5055	3	0	Median	1.2284	1.0602	NaN	1	0	Median	0.77229	0.91409	5.8485	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	438420000	243610000	194810000	74328000	31609000	42719000	364090000	212000000	152090000	0	0	0	0	0	0	45853	645	43156	277627;277628;277629	372392;372393;372394;372395	372395			3	
SIFVLPNDDLKK	2	Unmodified	1387.7711	0.77111627	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	63.966	63.68	3	0.0015683	54841	160511_QHF_FH_JSI12i_3	60.49	54.883			1.3571	1.3164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3571	1.3164	NaN	1	1	Median	44134000	20440000	23694000	0	0	0	0	0	0	0	0	0	44134000	20440000	23694000	45854	2311	43157	277630	372396	372396			1	
SIFWDRFFQPAR	0	Unmodified	1568.7888	0.78883202	5774				yes	yes	0	0	0	1				By MS/MS	2	0		1											1	68.24	66.941	3	0.0050405	57724	160511_QHF_FH_JSI12i_2	37.426	20.682	+		0.96898	1.0937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96898	1.0937	NaN	1	0	Median	259180000	124630000	134540000	0	0	0	0	0	0	0	0	0	259180000	124630000	134540000	45855	5774	43158	277631	372397	372397			1	
SIFYVPDMK	1	Unmodified	1098.542	0.54196796	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.34	1	4	5					3		4	3	4	2	73.118	70.032	2	0.00015459	61005	160511_QHF_FH_JSI12i_2	88.948	62.346			0.87583	0.85476	29.243	13	5	Median	1.0329	0.867	10.398	4	2	Median	0.77835	0.95283	17.598	3	0	Median	0.71074	0.68284	32.106	4	2	Median	0.59046	0.63243	61.038	2	1	Median	1373900000	722150000	651780000	245100000	126770000	118330000	290980000	169760000	121220000	603850000	300370000	303480000	234010000	125250000	108760000	45856	2328	43159	277632;277633;277634;277635;277636;277637;277638;277639;277640;277641;277642;277643;277644	372398;372399;372400;372401;372402;372403;372404;372405;372406;372407;372408;372409;372410;372411;372412;372413;372414	372400			16	
SIFYVPDMK	1	Oxidation (M)	1114.5369	0.53688258	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	66.041	55.315	2	0.011693	27879	160513_QHF_FH_JSI12Kac_5	70.919	47.49			15.828	17.433	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15.828	17.433	NaN	1	1	Median	15989000	1138700	14851000	0	0	0	0	0	0	0	0	0	15989000	1138700	14851000	45857	2328	43159	277645	372415	372415		1923	1	
SIFYVPDMKPSMFDVSR	1	Oxidation (M)	2033.9591	0.95906975	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			5							2	1	1	1	81.932	81.104	3	0.00037405	66136	160511_QHF_FH_JSI9i_3	66.335	56.171			1.1338	1.0375	17.102	5	1	Median	1.3744	1.1432	13.723	2	0	Median	1.1338	1.3426	NaN	1	0	Median	1.0164	0.93776	NaN	1	1	Median	0.9196	0.92317	NaN	1	0	Median	281370000	122150000	159220000	105440000	44263000	61174000	56045000	20357000	35689000	90330000	41902000	48428000	29555000	15628000	13927000	45858	2328	43160	277646;277647;277648;277649;277650	372416;372417;372418;372419;372420	372419		1923;1924	4	
SIFYVPDMKPSMFDVSR	1	Unmodified	2017.9642	0.96415513	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	3.85		3	7						1	3	3	4	1	93.875	92.602	2;3	6.3229E-07	78568	160511_QHF_FH_JSI10i_3	117.67	108.85			2.3944	2.2378	56.868	11	9	Median	1.5469	1.2871	40.135	3	1	Median	1.0512	1.2242	77.169	3	3	Median	2.4759	2.3225	54.29	4	4	Median	4.0748	4.1174	NaN	1	1	Median	3233400000	993400000	2240000000	461460000	162610000	298840000	596810000	227900000	368920000	1408400000	456020000	952390000	766720000	146870000	619850000	45859	2328	43160	277651;277652;277653;277654;277655;277656;277657;277658;277659;277660;277661	372421;372422;372423;372424;372425;372426;372427;372428;372429;372430;372431;372432;372433;372434;372435;372436;372437;372438;372439;372440;372441	372425			21	
SIFYVPDMKPSMFDVSR	1	2 Oxidation (M)	2049.954	0.95398437	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	2	1	By MS/MS				3	0			2							2				70.479	68.993	3	0.0034714	56683	160511_QHF_FH_JSI9i_3	55.011	48.44			1.5388	1.2419	51.642	2	1	Median	1.5388	1.2419	51.642	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53762000	22422000	31340000	53762000	22422000	31340000	0	0	0	0	0	0	0	0	0	45860	2328	43160	277662;277663	372442;372443	372443		1923;1924	2	
SIGASPNPFSVHTATAVPSGK	1	Unmodified	2024.0327	0.032703697	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	56.59	55.759	3	5.7077E-18	46499	160511_QHF_FH_JSI10i_3	142.43	113.47			1.0024	0.97031	29.849	5	2	Median	1.1422	0.97031	NaN	1	1	Median	0.97998	1.1309	NaN	1	0	Median	1.0024	0.96506	NaN	1	0	Median	1.2321	1.3008	51.847	2	1	Median	612700000	299450000	313250000	54995000	30351000	24645000	67346000	33633000	33713000	240140000	132760000	107380000	250220000	102710000	147510000	45861	940	43161	277664;277665;277666;277667;277668	372444;372445;372446;372447;372448;372449;372450	372447			7	
SIGDLGAR	0	Unmodified	787.41882	0.41881635	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		23.031	22.428	2	0.019076	18630	160511_QHF_FH_JSI11i_2	47.082	5.4294			0.9776	1.0809	6.5545	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90462	1.1322	NaN	1	0	Median	1.0565	1.032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	244990000	117450000	127540000	0	0	0	97689000	52204000	45485000	147300000	65243000	82052000	0	0	0	45862	4456	43162	277669;277670	372451	372451			1	
SIGDSVVIGDK	1	Unmodified	1088.5714	0.57135383	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	41.277	40.637	2	0.00040579	36980	160511_QHF_FH_JSI12i_1	87.789	61.187			0.79595	0.81505	34.974	5	5	Median	0.5501	0.45576	NaN	1	1	Median	0.75594	0.88453	NaN	1	1	Median	0.83301	0.81505	NaN	1	1	Median	0.94543	0.98525	27.508	2	2	Median	499550000	290810000	208730000	85312000	53773000	31539000	135840000	84872000	50965000	100180000	53981000	46196000	178220000	98188000	80032000	45863	2549	43163	277671;277672;277673;277674;277675	372452;372453;372454;372455;372456	372454			5	
SIGESVPEPR	0	Unmodified	1069.5404	0.54038805	5672	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		29.422	29.125	2	0.0094929	24696	160511_QHF_FH_JSI11i_2	49.715	24.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45864	5672	43164	277676;277677	372457;372458	372458			2	
SIGEYDVLR	0	Unmodified	1050.5346	0.53457439	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.6	4	4	2					3		3	4	3	3	52.91	49.676	2	1.317E-08	42639	160511_QHF_FH_JSI12i_2	152.47	106.75			1.0076	1.0316	22.802	13	2	Median	1.1998	1.0079	35.076	3	1	Plateau	0.88429	1.0668	30.106	4	1	Median	1.0076	1.0309	2.4535	3	0	Median	0.97423	1.046	4.4682	3	0	Plateau	3712200000	1908700000	1803500000	689170000	309360000	379810000	920060000	493680000	426380000	1332200000	706150000	626050000	770800000	399490000	371310000	45865	2094	43165	277678;277679;277680;277681;277682;277683;277684;277685;277686;277687;277688;277689;277690	372459;372460;372461;372462;372463;372464;372465;372466;372467;372468;372469;372470;372471;372472;372473;372474;372475;372476;372477;372478;372479	372462			21	
SIGILNIFK	1	Unmodified	1003.6066	0.60661712	3626	Q8NDA8	MROH1	Maestro heat-like repeat-containing protein family member 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	93.729	93.379	2	0.013843	83155	160511_QHF_FH_JSI11i_3	56.011	27.498			0.63723	0.68183	44.387	3	1	Median	1.1965	1.0238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.43821	0.4218	NaN	1	1	Median	0.63723	0.68183	NaN	1	0	Median	26327000	14458000	11869000	8610400	4031400	4579000	0	0	0	5519700	3545700	1974000	12197000	6880700	5316100	45866	3626	43166	277691;277692;277693	372480;372481	372480			2	
SIGQWYGPNTVAQVLK	1	Unmodified	1759.9257	0.92571943	5634	Q9Y4P1	ATG4B	Cysteine protease ATG4B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			88.119	87.009	2	0.0011468	72728	160511_QHF_FH_JSI10i_3	72.958	58.8			16.638	19.167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16.638	19.167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58944000	4620300	54324000	0	0	0	58944000	4620300	54324000	0	0	0	0	0	0	45867	5634	43167	277694	372482	372482			1	
SIGRPELK	1	Unmodified	898.52362	0.52361577	157	O00625	PIR	Pirin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		17.615	17.056	2;3	0.005298	13918	160511_QHF_FH_JSI10i_3	48.283	8.0148			1.1251	1.0132	8.6097	4	1	Median	1.2551	0.99465	NaN	1	0	Median	0.76324	0.89398	NaN	1	0	Median	1.1251	1.0643	4.3406	2	1	Median	NaN	NaN	NaN	0	0	Median	1364600000	618070000	746580000	454300000	211390000	242900000	266890000	136870000	130020000	643460000	269810000	373650000	0	0	0	45868	157	43168	277695;277696;277697;277698	372483;372484;372485;372486;372487;372488	372486			6	
SIGSAVDQGNESIVAK	1	Unmodified	1573.7948	0.79476484	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	42.554	41.899	2	1.2164E-16	37504	160511_QHF_FH_JSI10i_1	120.14	92.655			0.7152	0.74769	53.173	4	4	Median	0.33942	0.27383	NaN	1	1	Median	0.72859	0.85233	NaN	1	1	Median	0.70205	0.69015	NaN	1	1	Median	0.75597	0.81003	NaN	1	1	Median	150170000	88075000	62093000	20393000	14987000	5405800	40901000	24452000	16449000	44754000	27194000	17559000	44121000	21441000	22679000	45869	4634	43169	277699;277700;277701;277702;277703	372489;372490;372491;372492;372493;372494	372493			6	
SIGVPIK	1	Acetyl (Protein N-term)	754.45889	0.45889025	2003	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.24	5		1	2						2	3	2	1	57.41	55.19	1;2	0.0023173	50121	160511_QHF_FH_JSI12i_1	43	7.8947			1.0664	0.99716	4.2013	5	0	Median	1.1574	0.94483	0.68165	2	0	Median	0.86015	1.0238	NaN	1	0	Median	1.0664	1.0293	NaN	1	0	Median	0.94932	0.99716	NaN	1	0	Median	1715200000	810450000	904780000	877700000	398650000	479050000	301540000	167900000	133630000	333560000	146770000	186790000	202420000	97118000	105310000	45870	2003	43170	277704;277705;277706;277707;277708;277709;277710;277711	372495;372496;372497;372498;372499;372500;372501;372502;372503;372504;372505;372506	372499			12	
SIHFSSPVFTSR	0	Acetyl (Protein N-term)	1405.699	0.69901396	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		4	4					2	4	4	4	3	3	72.791	68.401	2	9.5917E-08	35891	160513_QHF_FH_JSI9Kac_6	136.52	131.17		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45871	53;71	43171	277712;277713;277714;277715;277716;277717;277718;277719;277720;277721;277722;277723;277724;277725	372507;372508;372509;372510;372511;372512;372513;372514;372515;372516;372517;372518;372519;372520;372521;372522	372519			16	
SIICYYNTYQVVQFNR	0	Unmodified	2066.9884	0.98839604	5292	Q9UHA4	LAMTOR3	Ragulator complex protein LAMTOR3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.914	75.318	2	1.9419E-140	41394	160513_QHF_FH_JSI10Kac_6	340.57	303.59			0.92979	1.0882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92979	1.0882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69557000	37723000	31834000	0	0	0	69557000	37723000	31834000	0	0	0	0	0	0	45872	5292	43172	277726	372523	372523			1	
SIIDEFLHINDFK	1	Unmodified	1589.809	0.80895834	334	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	101.32	101.33	3	0.00065665	87967	160511_QHF_FH_JSI12i_3	56.569	42.852			1.1821	1.1229	33.102	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.577	1.419	NaN	1	0	Median	0.88609	0.88856	NaN	1	0	Median	154130000	69309000	84818000	0	0	0	0	0	0	48431000	23966000	24465000	105700000	45343000	60353000	45873	334	43173	277727;277728	372524	372524			1	
SIIEGPIIK	1	Unmodified	968.59063	0.59063271	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.963	55.013	2	8.4594E-06	47175	160511_QHF_FH_JSI12i_2	107.66	81.928			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45874	28	43174	277729;277730;277731;277732	372525;372526;372527;372528	372525			4	
SIIFASWSAGDFGSVGATEWLEGYLSSLHLK	1	Unmodified	3327.6452	0.64519406	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			99.521	93.8	3;4	2.6727E-290	55070	160513_QHF_FH_JSI10Kac_6	332.07	305.41			0.7749	0.91669	12.244	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7749	0.91669	12.244	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	751100000	452660000	298440000	0	0	0	751100000	452660000	298440000	0	0	0	0	0	0	45875	793	43175	277733;277734	372529;372530;372531;372532	372530			4	
SIIGMGTGAGAYILTR	0	Unmodified	1579.8392	0.83921261	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.17	6.84		2	1						3	3	3			81.742	77.516	2;3	1.0345E-62	41404	160513_QHF_FH_JSI10Kac_6	203.74	157.74			0.969	1.025	13.186	5	1	Median	1.2338	1.0652	5.4382	2	1	Median	0.74704	0.95546	16.722	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	433920000	223260000	210660000	87657000	35717000	51940000	346260000	187550000	158720000	0	0	0	0	0	0	45876	3851	43176	277735;277736;277737;277738;277739;277740	372533;372534;372535;372536;372537;372538;372539	372538			7	
SIIGMIDMFHK	1	Unmodified	1290.6464	0.6464498	1369	Q86SG5;P31151	S100A7A;S100A7	Protein S100-A7A;Protein S100-A7	yes	no	0	0	0	0	By MS/MS				3	0			1							1				92.529	91.429	3	0.00015371	74739	160511_QHF_FH_JSI9i_3	82.171	69.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8643800	8643800	0	8643800	8643800	0	0	0	0	0	0	0	0	0	0	45877	1369	43177	277741	372540	372540			1	
SIIGVIPYFPYSK	1	Unmodified	1482.8123	0.8122528	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.09	1	6	4						4	3	5	3	4	97.166	94.728	2;3	1.2979E-19	43522	160513_QHF_FH_JSI12Kac_6	147.72	121.2			0.81923	0.73278	30.194	14	10	Median	0.92009	0.76417	7.9219	3	2	Median	0.57502	0.699	41.466	5	4	Median	0.80186	0.74466	12.335	3	2	Median	1.1641	1.2239	36.325	3	2	Median	805830000	436030000	369790000	170430000	90922000	79504000	201740000	123940000	77793000	270400000	137180000	133220000	163270000	83993000	79273000	45878	402	43178	277742;277743;277744;277745;277746;277747;277748;277749;277750;277751;277752;277753;277754;277755;277756	372541;372542;372543;372544;372545;372546;372547;372548;372549;372550;372551;372552;372553;372554;372555;372556;372557	372555			17	
SIILEGFK	1	Unmodified	905.52222	0.52221879	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.5	4.72		3	2					1		3		1	2	62.256	61.344	2	0.00038974	53915	160511_QHF_FH_JSI9i_2	109.86	32.188			1.0008	0.92936	11.73	5	0	Median	1.0168	0.85666	1.1103	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95296	0.92936	NaN	1	0	Median	1.0095	1.0667	7.8558	2	0	Median	536420000	265250000	271160000	121820000	51211000	70605000	0	0	0	147570000	72845000	74727000	267030000	141200000	125830000	45879	679	43179	277757;277758;277759;277760;277761;277762	372558;372559;372560;372561;372562;372563;372564;372565;372566	372562			9	
SIILHLISQLK	1	Unmodified	1263.7915	0.79145778	4513	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			84.668	76.057	3	0.0015424	43327	160513_QHF_FH_JSI10Kac_6	64.65	55.328			0.5366	0.46725	NaN	1	1	Median	0.5366	0.46725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29836000	20516000	9319800	29836000	20516000	9319800	0	0	0	0	0	0	0	0	0	45880	4513	43180	277763;277764	372567;372568	372568			2	
SIIPLPHPVRPEDIE	0	Unmodified	1710.9305	0.93047046	1958	P61599	NAA20	N-alpha-acetyltransferase 20	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	73.097	72.692	2;3	3.9297E-05	63013	160511_QHF_FH_JSI12i_3	107.74	94.617			1.1539	1.095	16.858	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2506	1.4219	NaN	1	0	Median	1.2765	1.2089	14.002	2	0	Median	0.95736	0.99853	6.5826	2	0	Median	484570000	224020000	260550000	0	0	0	35863000	15341000	20522000	227240000	100210000	127020000	221470000	108460000	113010000	45881	1958	43181	277765;277766;277767;277768;277769	372569;372570;372571;372572;372573;372574;372575;372576	372575			8	
SIIQDLKK	2	Unmodified	943.57023	0.57023162	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		30.714	30.714	2	0.031213	26603	160511_QHF_FH_JSI11i_3	58.981	7.6349			0.5719	0.53865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5719	0.53865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19512000	13493000	6018800	0	0	0	0	0	0	19512000	13493000	6018800	0	0	0	45882	5468	43182	277770	372577	372577			1	
SIIQEVAR	0	Unmodified	914.51853	0.5185304	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.381	34.958	2	0.058176	29717	160511_QHF_FH_JSI11i_2	44.395	12.46			0.90375	0.90223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90375	0.90223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53710000	28043000	25668000	0	0	0	0	0	0	53710000	28043000	25668000	0	0	0	45883	4142	43183	277771	372578	372578			1	
SIIQQHNLETLENDIK	1	Unmodified	1893.9796	0.97960549	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.694	65.547	3	5.5327E-05	58284	160511_QHF_FH_JSI11i_3	74.993	63.301			0.79085	0.76347	9.5192	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87601	0.81663	NaN	1	0	Median	0.71397	0.71377	NaN	1	0	Median	104110000	55457000	48649000	0	0	0	0	0	0	50806000	27581000	23226000	53300000	27876000	25424000	45884	135	43184	277772;277773	372579;372580	372579			2	
SIIQSAQQDSIK	1	Unmodified	1316.6936	0.69359423	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.38	2	4	2				3			1	3	4	3	37.891	34.409	2	5.4691E-10	30159	160511_QHF_FH_JSI11i_3	124.67	78.988			0.79806	0.85298	55.604	10	4	Median	1.0973	0.93774	NaN	1	0	Median	0.83542	1.0375	32.173	3	2	Median	0.38135	0.37716	82.023	3	2	Plateau	0.77605	0.88757	26.469	3	0	Median	473020000	287930000	185080000	66277000	32511000	33766000	146770000	87414000	59360000	174950000	126530000	48419000	85018000	41478000	43539000	45885	3860	43185	277774;277775;277776;277777;277778;277779;277780;277781;277782;277783;277784	372581;372582;372583;372584;372585;372586;372587;372588;372589;372590;372591;372592	372581			12	
SIIQSAQQDSIKK	2	Unmodified	1444.7886	0.78855725	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	3.39		2	9					1		4	4	3	1	28.491	26.82	2;3	2.0932E-12	22999	160511_QHF_FH_JSI11i_3	125.97	62.811			1.2576	1.0216	48.945	11	6	Median	1.1961	0.995	21.812	4	1	Median	1.0487	1.2373	76.475	4	3	Median	1.0796	1.0156	67.335	2	1	Median	1.332	1.3116	NaN	1	1	Median	712630000	329320000	383320000	221180000	80733000	140450000	255710000	135500000	120210000	208230000	98720000	109510000	27518000	14365000	13153000	45886	3860	43186	277785;277786;277787;277788;277789;277790;277791;277792;277793;277794;277795;277796	372593;372594;372595;372596;372597;372598;372599;372600;372601;372602;372603;372604;372605;372606;372607;372608	372596			16	
SIISMFDR	0	Unmodified	967.4797	0.47970205	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.57	0.495		3	4							2	2	2	1	66.454	65.773	2	0.0014389	55029	160511_QHF_FH_JSI10i_3	84.743	54.576			0.83438	0.80484	71.069	6	2	Median	0.79805	0.66698	24.285	2	1	Median	0.87518	1.0794	NaN	1	1	Median	1.8073	1.7675	120.43	2	0	Median	0.78724	0.81796	NaN	1	0	Median	425990000	214480000	211510000	149880000	80642000	69234000	59143000	29766000	29376000	178380000	83720000	94659000	38597000	20354000	18242000	45887	503	43187	277797;277798;277799;277800;277801;277802;277803	372609;372610;372611;372612;372613	372610			5	
SIISMFDRENK	1	Unmodified	1338.6602	0.66018561	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		56.494	55.496	3	0.00083933	46511	160511_QHF_FH_JSI10i_3	59.57	44.368			0.84812	0.78233	24.668	4	1	Median	0.89185	0.73477	NaN	1	0	Median	0.59296	0.70835	40.597	2	1	Median	0.88672	0.83297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218250000	118980000	99270000	41971000	17979000	23991000	110090000	62332000	47754000	66197000	38672000	27525000	0	0	0	45888	503	43188	277804;277805;277806;277807	372614;372615;372616;372617;372618;372619	372617			6	
SIITYVATYYHYFSK	1	Unmodified	1854.9192	0.91923707	234	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.588	84.237	3	5.0997E-53	45247	160513_QHF_FH_JSI12Kac_6	192.4	174.27			0.80339	0.7787	17.362	4	1	Median	0.88901	0.77795	NaN	1	0	Median	0.65384	0.77946	NaN	1	0	Median	1.141	1.0908	NaN	1	1	Median	0.72602	0.75744	NaN	1	0	Median	2366000000	1264200000	1101800000	327660000	189490000	138170000	719890000	430250000	289640000	673610000	333440000	340170000	644850000	311020000	333840000	45889	234	43189	277808;277809;277810;277811	372620;372621;372622;372623;372624;372625;372626	372623			7	
SIITYVSSLYDAMPR	0	Unmodified	1714.86	0.86000763	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			94.451	88.731	3	0.00012787	51038	160513_QHF_FH_JSI10Kac_6	81.703	71.631			1.0842	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0842	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54544000	28410000	26134000	0	0	0	54544000	28410000	26134000	0	0	0	0	0	0	45890	2636	43190	277812	372627;372628	372628			2	
SIITYVVTYYHYFSK	1	Unmodified	1882.9505	0.9505372	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	2				2					8	2	3	3	2	95.321	86.861	2;3	2.0911E-63	48592	160513_QHF_FH_JSI9Kac_6	180.62	141.11			0.62331	0.6196	27.38	9	0	Median	0.65947	0.56434	11.962	2	0	Median	0.64385	0.76731	30.239	2	0	Median	1.0924	1.0324	30.439	3	0	Plateau	0.51184	0.54251	22.215	2	0	Median	3197000000	1812200000	1384800000	750590000	439300000	311290000	776940000	412950000	363990000	706930000	356930000	350000000	962520000	603030000	359500000	45891	2162	43191	277813;277814;277815;277816;277817;277818;277819;277820;277821;277822	372629;372630;372631;372632;372633;372634;372635;372636;372637;372638;372639;372640	372635			12	
SILAETEGMLR	0	Unmodified	1218.6278	0.62782285	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	69.447	69.298	2	0.00013488	60112	160511_QHF_FH_JSI12i_3	107.21	76.951			1.3035	1.2628	3.4193	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3905	1.2937	NaN	1	0	Median	1.2219	1.2327	NaN	1	1	Median	151650000	69057000	82595000	0	0	0	0	0	0	67701000	28190000	39511000	83951000	40867000	43085000	45892	5213	43192	277823;277824;277825	372641;372642;372643;372644	372644			4	
SILAEYK	1	Unmodified	822.44872	0.4487195	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	32.824	31.898	2	0.013326	27226	160511_QHF_FH_JSI12i_2	67.981	24.857			0.50603	0.56672	31.71	4	0	Linear	1.2208	1.0376	NaN	1	0	Median	0.60819	0.75341	NaN	1	0	Median	0.49928	0.50431	NaN	1	0	Median	0.82529	0.92451	NaN	1	0	Median	396460000	202790000	193670000	51881000	24611000	27270000	111910000	59920000	51985000	142250000	74546000	67707000	90420000	43714000	46706000	45893	5505	43193	277826;277827;277828;277829	372645;372646;372647;372648	372645			4	
SILAKPSSSPDPR	1	Acetyl (K)	1395.7358	0.73579339	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	52.021	41.549	2	5.0013E-05	23777	160513_QHF_FH_JSI12Kac_4	95.573	65.319			0.94445	1.0158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94445	1.0158	NaN	1	0	Median	3255200	1671300	1583900	0	0	0	0	0	0	0	0	0	3255200	1671300	1583900	45894	4413	43194	277830;277831	372649;372650;372651	372651	3155		3	
SILAMHAQDPQMLDQLSK	1	Unmodified	2025.0023	0.002331546	3317	Q86U70	LDB1	LIM domain-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.898	2	1	3							1	1	3	1	71.409	70.798	3	0.00013111	63000	160511_QHF_FH_JSI11i_3	76.301	63.07			1.0757	1.0544	22.019	6	2	Median	1.0763	0.87969	NaN	1	0	Median	0.91845	1.0293	NaN	1	1	Median	1.1115	1.1034	27.551	3	1	Median	1.0703	1.0802	NaN	1	0	Median	587710000	268500000	319200000	171780000	82453000	89329000	22495000	13019000	9475500	313290000	131570000	181720000	80141000	41463000	38678000	45895	3317	43195	277832;277833;277834;277835;277836;277837	372652;372653;372654	372652			2	
SILCCLR	0	Unmodified	920.45719	0.45719247	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	2.5	0.5		3	3							2	2	1	1	41.601	40.639	2	0.0051768	33067	160511_QHF_FH_JSI9i_3	103.28	52.677			1.0903	1.0339	15.89	6	1	Median	1.2119	1.0339	4.6672	2	1	Median	0.89201	1.0531	22.764	2	0	Median	0.93138	0.9258	NaN	1	0	Median	1.3144	1.3337	NaN	1	0	Median	543710000	266090000	277610000	190440000	88383000	102060000	209640000	113170000	96468000	80558000	34257000	46300000	63064000	30282000	32782000	45896	2642	43196	277838;277839;277840;277841;277842;277843	372655;372656;372657;372658	372656			4	
SILCCLRK	1	Unmodified	1048.5522	0.55215549	2642	Q15185	PTGES3	Prostaglandin E synthase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.4	0.49	3	2								1	2	2		90.634	90.189	2	0.047314	80135	160511_QHF_FH_JSI10i_2	52.683	26.946			1.3054	1.2193	9.0825	4	0	Median	1.5533	1.2406	NaN	1	0	Median	0.8875	1.0345	NaN	1	0	Median	1.3054	1.2305	3.7476	2	0	Median	NaN	NaN	NaN	0	0	Median	138900000	64719000	74179000	25090000	8799400	16290000	48444000	31078000	17366000	65365000	24841000	40523000	0	0	0	45897	2642	43197	277844;277845;277846;277847;277848	372659;372660	372660			2	
SILDWTSFNQER	0	Unmodified	1494.7103	0.71030693	847	P06280	GLA	Alpha-galactosidase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			81.753	80.424	2	3.0889E-06	67391	160511_QHF_FH_JSI10i_3	141.93	115.42			1.0483	1.0128	6.2738	2	0	Median	1.3133	1.0587	NaN	1	0	Median	0.83675	0.96886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57684000	28548000	29136000	25087000	10430000	14657000	32597000	18118000	14479000	0	0	0	0	0	0	45898	847	43198	277849;277850	372661;372662;372663;372664	372662			4	
SILEILSK	1	Unmodified	901.54843	0.54843354	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	73.592	72.791	2	0.0045929	64841	160511_QHF_FH_JSI11i_3	68.224	21.798			1.0536	0.98651	7.1296	4	0	Median	1.0597	0.88765	NaN	1	0	Median	0.88948	0.99637	NaN	1	0	Median	1.1041	1.0534	NaN	1	0	Median	1.0476	0.97675	NaN	1	0	Median	95286000	48064000	47222000	15742000	7215800	8526700	21591000	13365000	8225700	26077000	10961000	15116000	31876000	16522000	15353000	45899	2386	43199	277851;277852;277853;277854	372665;372666;372667;372668;372669	372665			5	
SILEIMHK	1	Unmodified	969.53174	0.53173762	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	0.421		3	10							3	4	3	3	48.013	47.24	2;3	9.3704E-07	38825	160511_QHF_FH_JSI9i_3	150.84	22.993			1.1209	1.1003	36.892	13	7	Median	1.3166	1.0603	25.997	3	0	Plateau	0.86985	1.013	44.888	4	2	Median	1.4888	1.4069	34.448	3	2	Median	0.58376	0.59648	42.145	3	3	Plateau	3435200000	1817900000	1617400000	832310000	370530000	461780000	685440000	359660000	325780000	714740000	376180000	338570000	1202800000	711490000	491270000	45900	132	43200	277855;277856;277857;277858;277859;277860;277861;277862;277863;277864;277865;277866;277867	372670;372671;372672;372673;372674;372675;372676;372677;372678;372679;372680;372681;372682;372683;372684;372685;372686;372687;372688;372689;372690;372691;372692;372693	372684			24	
SILEIMHK	1	Oxidation (M)	985.52665	0.52665224	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				28.752	27.371	3	0.04053	22266	160511_QHF_FH_JSI9i_3	32.999	25.067			4.4383	3.715	NaN	1	1	Median	4.4383	3.715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14697000	2970100	11727000	14697000	2970100	11727000	0	0	0	0	0	0	0	0	0	45901	132	43200	277868	372694	372694			1	
SILEQLAEK	1	Unmodified	1029.5706	0.57062555	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	56.838	55.953	2	7.6591E-07	47946	160511_QHF_FH_JSI12i_3	115.71	47.491			1.0303	0.95042	31.436	6	2	Median	0.94374	0.79428	NaN	1	0	Median	0.84325	1.0188	35.953	2	0	Median	0.97913	0.95042	17.028	2	1	Median	1.5802	1.708	NaN	1	1	Median	550030000	288660000	261370000	72777000	43219000	29558000	148940000	81299000	67639000	296910000	152350000	144560000	31408000	11791000	19617000	45902	1296	43201	277869;277870;277871;277872;277873;277874;277875;277876	372695;372696;372697;372698;372699;372700;372701;372702;372703;372704;372705	372705			11	
SILFVPTSAPR	0	Unmodified	1186.671	0.67100829	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.43	2	5	6				2	4	4	4	7	7	5	70.692	65.833	2;3	1.5715E-07	59018	160511_QHF_FH_JSI11i_3	123.63	103.84			1.1186	1.0977	27.397	22	1	Median	1.2327	1.0517	13.183	4	0	Median	0.85655	1.0262	12.953	6	0	Median	1.1347	1.0879	34.293	7	1	Median	1.2436	1.2662	33.97	5	0	Median	25006000000	12161000000	12845000000	4135600000	1723600000	2412100000	5956500000	3216700000	2739800000	8232200000	4003100000	4229200000	6681500000	3217500000	3464000000	45903	1057	43202	277877;277878;277879;277880;277881;277882;277883;277884;277885;277886;277887;277888;277889;277890;277891;277892;277893;277894;277895;277896;277897;277898;277899	372706;372707;372708;372709;372710;372711;372712;372713;372714;372715;372716;372717;372718;372719;372720;372721;372722;372723;372724;372725;372726;372727;372728;372729;372730;372731;372732;372733;372734;372735;372736;372737;372738;372739;372740	372707			33	
SILISSVASVHHANGLAK	1	Unmodified	1803.0003	0.0002813566	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									7	3	3	1		57.745	48.713	3;4	8.5497E-07	25887	160513_QHF_FH_JSI9Kac_6	102.78	85.557			1.0136	0.94096	63.601	6	3	Median	1.0442	0.88828	67.396	3	2	Median	0.52416	0.61297	68.759	2	1	Median	1.1959	1.165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128530000	64971000	63563000	63447000	26640000	36808000	48597000	29181000	19416000	16490000	9149800	7340300	0	0	0	45904	2457	43203	277900;277901;277902;277903;277904;277905;277906	372741;372742;372743;372744;372745;372746;372747;372748	372743			8	
SILKIDDVVNTR	1	Acetyl (K)	1413.7827	0.78274359	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		78.346	67.736	2	0.0017714	35969	160513_QHF_FH_JSI11Kac_5	78.653	32.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6704800	5111500	1593300	0	0	0	0	0	0	6704800	5111500	1593300	0	0	0	45905	1722	43204	277907;277908	372749;372750	372749	1742		2	
SILKIHAR	1	Acetyl (K);Acetyl (Protein N-term)	1020.608	0.60801411	854	P06733	ENO1	Alpha-enolase	yes	yes	1	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	1.05						2	3	4	4	2	3	4	4	63.052	52.874	2	2.2324E-23	26666	160513_QHF_FH_JSI10Kac_5	188.98	102.14			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45906	854	43205	277909;277910;277911;277912;277913;277914;277915;277916;277917;277918;277919;277920;277921	372751;372752;372753;372754;372755;372756;372757;372758;372759;372760;372761;372762;372763;372764	372761	528		14	
SILLATDVASR	0	Unmodified	1144.6452	0.64518747	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.91		3	3					3		1	3	2	3	58.34	54.182	2	7.3179E-05	48147	160511_QHF_FH_JSI11i_3	91.658	52.636			0.74698	0.88516	26.226	9	2	Median	1.1006	0.93818	NaN	1	0	Median	0.73135	0.8803	3.7065	3	1	Median	0.78578	0.73832	37.756	2	0	Median	1.1372	1.1376	42.29	3	1	Plateau	369810000	200510000	169300000	49367000	25175000	24192000	77679000	48880000	28799000	94074000	44770000	49304000	148690000	81688000	67006000	45907	4640	43206	277922;277923;277924;277925;277926;277927;277928;277929;277930	372765;372766;372767;372768;372769;372770;372771;372772;372773;372774	372765			9	
SILLGLLLGAGR	0	Unmodified	1181.7496	0.74959297	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			95.259	87.892	2	7.1821E-19	49100	160513_QHF_FH_JSI9Kac_6	150.85	121.77			0.8758	0.89249	3.773	2	0	Median	1.0062	0.869	NaN	1	0	Median	0.76227	0.91662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224060000	120660000	103390000	74450000	35950000	38500000	149610000	84712000	64894000	0	0	0	0	0	0	45908	1701	43207	277931;277932	372775;372776;372777;372778	372776			4	
SILLSVPLLVVDNK	1	Unmodified	1508.9178	0.91778051	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	2	4	101.85	101.77	2;3	1.4611E-71	84356	160511_QHF_FH_JSI10i_3	283.52	265.7			0.89399	0.90071	28.106	8	8	Median	NaN	NaN	NaN	0	0	Median	1.0468	1.2528	8.4675	2	2	Median	0.80117	0.78255	18.668	2	2	Median	1.1383	1.1524	27.477	4	4	Linear	1820600000	992560000	828070000	0	0	0	355770000	181110000	174660000	507170000	292190000	214980000	957700000	519260000	438440000	45909	1805	43208	277933;277934;277935;277936;277937;277938;277939;277940	372779;372780;372781;372782;372783;372784;372785;372786	372782			8	
SILNAYPSEK	1	Unmodified	1120.5764	0.57643921	5155	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		49.794	40.322	3	0.05547	21415	160513_QHF_FH_JSI9Kac_6	22.232	8.8785			5.9994	5.5103	27.671	2	2	Median	7.8048	6.7012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.6116	4.5311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42746000	8429700	34317000	22931000	2801200	20130000	0	0	0	19815000	5628500	14187000	0	0	0	45910	5155	43209	277941;277942	372787;372788	372788			2	
SILNSLSGEELETLK	1	Unmodified	1631.8618	0.86178177	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.652	80.652	2	1.7968E-07	72060	160511_QHF_FH_JSI11i_3	91.914	75.716			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45911	4975	43210	277943	372789	372789			1	
SILPQAALEEIHK	1	Unmodified	1447.8035	0.80347903	582	O75911	DHRS3	Short-chain dehydrogenase/reductase 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.859	66.56	3	0.0096512	57338	160511_QHF_FH_JSI12i_2	58.268	47.343			0.73494	0.82611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73494	0.82611	NaN	1	0	Median	29367000	17756000	11611000	0	0	0	0	0	0	0	0	0	29367000	17756000	11611000	45912	582	43211	277944	372790	372790			0	
SILPTAPR	0	Unmodified	853.50215	0.50215205	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	36.775	36.203	2	0.0015998	30765	160511_QHF_FH_JSI12i_3	87.323	52.43			0.93503	0.96134	9.3815	9	4	Median	1.1463	0.96134	NaN	1	0	Median	0.78006	0.92887	8.7339	2	1	Median	1.2005	1.1672	12.219	3	2	Plateau	0.9063	0.95822	9.2059	3	1	Median	5299100000	2613900000	2685200000	558950000	248520000	310440000	903200000	490230000	412970000	1901700000	900770000	1000900000	1935200000	974400000	960840000	45913	1237	43212	277945;277946;277947;277948;277949;277950;277951;277952;277953	372791;372792;372793;372794;372795;372796;372797;372798;372799;372800	372800			10	
SILQNLDLR	0	Unmodified	1070.6084	0.60840804	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			65.806	64.309	2	0.00054208	53916	160511_QHF_FH_JSI10i_3	88.948	30.988			1.2145	1.214	37.32	2	2	Median	1.8585	1.5806	NaN	1	1	Median	0.79366	0.93239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28424000	13315000	15109000	9888700	3335100	6553600	18535000	9979600	8555500	0	0	0	0	0	0	45914	4765	43213	277954;277955	372801;372802	372801			2	
SILSLGLACFK	1	Unmodified	1207.6635	0.66348007	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	1	2	2	90.021	86.53	2	6.0173E-13	81231	160511_QHF_FH_JSI11i_3	145.17	105.13			1.1049	0.99935	23.716	6	0	Median	1.1476	0.94171	NaN	1	0	Median	0.88878	1.0125	NaN	1	0	Median	0.92358	0.86439	18.668	2	0	Median	1.2379	1.3903	0.32564	2	0	Median	268000000	139210000	128800000	27482000	10658000	16823000	36201000	17197000	19004000	121830000	67895000	53931000	82494000	43455000	39039000	45915	4094	43214	277956;277957;277958;277959;277960;277961	372803;372804;372805;372806;372807;372808;372809;372810;372811;372812	372803			10	
SILSPGGSCGPIK	1	Unmodified	1271.6544	0.65437195	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	44.143	44.023	2	4.8804E-06	38941	160511_QHF_FH_JSI11i_3	125.22	96.818			1.2508	1.2218	58.426	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85081	0.80834	NaN	1	1	Median	1.839	1.8469	NaN	1	1	Median	159040000	63232000	95804000	0	0	0	0	0	0	65155000	29486000	35669000	93881000	33746000	60135000	45916	2087	43215	277962;277963	372813;372814	372813			2	
SILTISR	0	Unmodified	788.4756	0.47560295	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.4	0.49		3	2							1	1	1	2	37.52	36.63	2	0.0037065	30519	160511_QHF_FH_JSI10i_3	102.77	14.745			0.75334	0.85912	42.39	5	1	Median	1.0202	0.85912	NaN	1	0	Median	0.75334	0.88263	NaN	1	0	Median	0.73966	0.76571	NaN	1	0	Median	0.50975	0.53758	68.965	2	1	Median	567430000	309420000	258010000	92796000	44764000	48032000	218350000	120860000	97493000	91248000	49033000	42215000	165040000	94768000	70269000	45917	1872	43216	277964;277965;277966;277967;277968	372815;372816;372817	372815			3	
SILTLSHEPK	1	Unmodified	1123.6237	0.62372375	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.57		2	8						3	3	4	3	3	39.146	36.491	2;3	1.6778E-10	28321	160511_QHF_FH_JSI12i_3	129.88	96.133			0.96994	1.0718	18.82	13	1	Median	1.8307	1.4638	18.123	3	0	Median	0.92627	1.112	7.9208	4	1	Median	1.1243	1.0067	12.662	3	0	Plateau	0.93794	0.96305	6.7528	3	0	Plateau	2847400000	1500200000	1347300000	87611000	32259000	55352000	352740000	173910000	178830000	810490000	432050000	378440000	1596600000	861940000	734630000	45918	3290	43217	277969;277970;277971;277972;277973;277974;277975;277976;277977;277978;277979;277980;277981	372818;372819;372820;372821;372822;372823;372824;372825;372826;372827;372828;372829;372830;372831;372832;372833;372834;372835;372836;372837;372838;372839;372840;372841;372842	372836			25	
SILTQPHLYSPVLISQLVQMASQLR	0	Unmodified	2821.5524	0.55242007	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	1	2		1	98.241	90.737	3;4	6.1558E-94	53885	160513_QHF_FH_JSI10Kac_6	227.51	206.89			0.98026	1.1201	22.319	4	1	Median	1.4431	1.2635	NaN	1	0	Median	0.98026	1.1611	22.114	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79592	0.8354	NaN	1	0	Median	1692800000	776970000	915820000	334470000	124760000	209710000	1152000000	551190000	600840000	0	0	0	206300000	101020000	105270000	45919	235	43218	277982;277983;277984;277985	372843;372844;372845	372844			3	
SILTVPWVELGGK	1	Unmodified	1397.7919	0.79185171	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	100.14	100.06	2	1.1027E-07	86469	160511_QHF_FH_JSI12i_3	139.86	105.33			0.94274	0.95042	11.395	5	1	Median	NaN	NaN	NaN	0	0	Median	0.78594	0.92479	NaN	1	0	Median	1.0107	0.97353	3.399	2	1	Median	1.0055	1.0594	19.14	2	0	Median	109520000	56119000	53403000	0	0	0	16572000	9130900	7440900	44588000	23237000	21352000	48362000	23752000	24610000	45920	4512	43219	277986;277987;277988;277989;277990	372846;372847;372848;372849;372850;372851;372852	372851			4	
SILVKDTQAMK	2	Acetyl (K);Oxidation (M)	1290.6853	0.68533773	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS		14	0							2				1	1		45.804	35.546	2	0.011906	20210	160513_QHF_FH_JSI10Kac_4	61.353	32.626			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1416500	0	1416500	0	0	0	690990	0	690990	725510	0	725510	0	0	0	45921	1002	43220	277991;277992	372853;372854	372853	797	582	2	
SILVPNEELSMVMSSK	1	Unmodified	1762.8845	0.88450782	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.31	90.794	2	7.9787E-05	79837	160511_QHF_FH_JSI11i_2	77.305	52.513			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45922	3819	43221	277993	372855	372855			1	
SILVSPTGPSR	0	Unmodified	1112.619	0.61897272	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	38.419	38.329	2	0.0024454	32575	160511_QHF_FH_JSI12i_3	72.365	49.625			1.0916	1.0709	13.212	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0481	0.97534	NaN	1	1	Median	1.137	1.1757	NaN	1	1	Median	242850000	123800000	119060000	0	0	0	0	0	0	97885000	44047000	53838000	144970000	79748000	65220000	45923	2561	43222	277994;277995;277996	372856;372857;372858	372858			3	
SILYDER	0	Unmodified	894.4447	0.44469675	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	5.98		3					2	4		2	3	3	1	32.182	25.584	2	0.0040738	22737	160511_QHF_FH_JSI10i_2	100.39	48.091			0.94827	1.0097	40.688	9	1	Median	0.66703	0.55524	84.569	2	0	Median	0.73679	0.8893	11.123	3	0	Median	1.0531	1.1482	6.9213	3	1	Plateau	0.94827	1.0532	NaN	1	0	Median	2616200000	1829600000	786680000	704750000	521010000	183740000	769020000	544290000	224730000	1133100000	759570000	373570000	9328300	4680600	4647700	45924	1265	43223	277997;277998;277999;278000;278001;278002;278003;278004;278005	372859;372860;372861;372862;372863;372864	372864			6	
SILYNLYDLLVNEISHIGSR	0	Unmodified	2318.227	0.22704641	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.67	95.952	3	3.0858E-45	56681	160513_QHF_FH_JSI10Kac_6	182.39	156.88			1.1361	1.3245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1361	1.3245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117110000	52965000	64146000	0	0	0	117110000	52965000	64146000	0	0	0	0	0	0	45925	2386	43224	278006	372865;372866	372866			2	
SIMELMNVLELR	0	Unmodified	1446.7575	0.75745681	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		102.16	101.99	2	3.4683E-07	82896	160511_QHF_FH_JSI9i_3	183	145.81			1.2575	1.0213	NaN	1	1	Median	1.2575	1.0213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57284000	38264000	19020000	26608000	7588300	19020000	30676000	30676000	0	0	0	0	0	0	0	45926	5479	43225	278007;278008;278009;278010	372867;372868;372869;372870	372869			4	
SIMFLVLLPYLK	1	Unmodified	1435.8513	0.85128084	156	O00623	PEX12	Peroxisome assembly protein 12	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.24	93.52	2	5.2372E-11	54880	160513_QHF_FH_JSI10Kac_6	129.38	93.423			0.51229	0.61468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.51229	0.61468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42465000	23629000	18836000	0	0	0	42465000	23629000	18836000	0	0	0	0	0	0	45927	156	43226	278011	372871	372871			0	
SIMFTVQNED	0	Unmodified	1182.5227	0.52268908	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	1	0	3									1	1		1	63.879	63.193	2	0.002265	57369	160511_QHF_FH_JSI10i_1	60.91	52.985			0.77431	0.92158	3.9214	3	0	Plateau	1.0144	0.86621	NaN	1	0	Median	0.77431	0.9301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82299	0.87234	NaN	1	0	Median	154870000	81693000	73173000	37544000	20887000	16657000	67275000	35387000	31888000	0	0	0	50047000	25419000	24628000	45928	2490	43227	278012;278013;278014	372872	372872			1	
SIMGLEGEDEGAISMLSDNTAK	1	Unmodified	2267.0297	0.029728088	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	88.451	88.066	2;3	1.5421E-47	80202	160511_QHF_FH_JSI11i_1	235.16	197.73			1.1792	1.2305	30.195	7	4	Median	2.7271	2.2636	NaN	1	1	Median	0.96801	1.097	16.245	2	2	Median	1.6232	1.5671	6.598	2	1	Median	1.07	1.0845	15.109	2	0	Median	146930000	62864000	84069000	9554100	1344200	8209900	46119000	22392000	23727000	47492000	18458000	29034000	43767000	20669000	23098000	45929	3785	43228	278015;278016;278017;278018;278019;278020;278021;278022;278023	372873;372874;372875;372876;372877;372878;372879;372880;372881;372882;372883	372874			11	
SIMLVAHR	0	Unmodified	925.51676	0.51675626	1115	P17342	NPR3	Atrial natriuretic peptide receptor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	46.873	37.589	3	0.0040317	20615	160513_QHF_FH_JSI10Kac_6	55.531	20.706			0.17684	0.17313	37.506	3	3	Median	0.37032	0.31634	NaN	1	1	Median	0.13479	0.15898	NaN	1	1	Median	0.17684	0.17313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74509000	24504000	50005000	17663000	4785400	12878000	35052000	14806000	20247000	16315000	4913100	11402000	5478000	0	5478000	45930	1115	43229	278024;278025;278026;278027	372884;372885;372886;372887	372887			4	
SIMSFFHPK	1	Unmodified	1092.5426	0.54263666	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	2	3	65.569	61.237	2;3	4.1376E-07	50548	160511_QHF_FH_JSI9i_3	115.71	85.15			0.91921	0.8744	15.072	9	0	Median	1.0373	0.8604	14.881	2	0	Median	0.80985	0.94026	26.173	2	0	Median	0.94908	0.90146	4.3113	2	0	Median	0.75104	0.77412	17.776	3	0	Median	1069500000	542400000	527140000	253770000	117210000	136560000	288160000	152000000	136160000	267410000	118900000	148500000	260210000	154290000	105920000	45931	1148	43230	278028;278029;278030;278031;278032;278033;278034;278035;278036	372888;372889;372890;372891;372892;372893;372894;372895;372896;372897;372898;372899;372900;372901;372902;372903;372904;372905;372906	372897			18	
SIMSYNGGAVMAMK	1	Acetyl (Protein N-term)	1500.6775	0.67749193	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.593	81.123	2	3.3889E-52	72258	160511_QHF_FH_JSI9i_1	152.28	141.52			1.03	1.0637	7.1263	4	0	Median	1.248	1.0154	NaN	1	0	Median	0.9097	1.1142	NaN	1	0	Median	0.99158	0.97558	NaN	1	0	Median	1.07	1.1296	NaN	1	0	Median	1120500000	520320000	600170000	301670000	132210000	169460000	281810000	138440000	143370000	241560000	122600000	118960000	295460000	127080000	168380000	45932	1672	43231	278037;278038;278039;278040	372907;372908;372909;372910;372911;372912;372913;372914;372915	372914			9	
SIMSYNGGAVMAMK	1	Acetyl (Protein N-term);Oxidation (M)	1516.6724	0.67240656	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	1	1	0	By MS/MS				1	0	1									1				66.853	65.842	2	2.9796E-05	58542	160511_QHF_FH_JSI9i_1	114.5	94.193			1.2558	1.0179	NaN	1	1	Median	1.2558	1.0179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20813000	6885600	13927000	20813000	6885600	13927000	0	0	0	0	0	0	0	0	0	45933	1672	43231	278041	372916	372916		1358;1359;1360	1	
SIMSYNGGAVMAMK	1	Acetyl (Protein N-term);3 Oxidation (M)	1548.6622	0.6622358	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	1	3	0			By matching	By MS/MS	11.5	0.5				1	1							1	1	49.514	40.244	2	0.0089525	16690	160513_QHF_FH_JSI12Kacf_1	45.161	37.515			0.85086	0.83934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85086	0.83934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1555400	631920	923520	0	0	0	0	0	0	1020600	631920	388690	534830	0	534830	45934	1672	43231	278042;278043	372917	372917		1358;1359;1360	1	
SIMSYNGGAVMAMK	1	Acetyl (Protein N-term);2 Oxidation (M)	1532.6673	0.66732118	1672	P49720	PSMB3	Proteasome subunit beta type-3	yes	yes	0	1	2	0		By MS/MS			11	0				1							1			65.147	55.628	2	0.0044133	22416	160513_QHF_FH_JSI10Kac_1	44.309	42.714			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45935	1672	43231	278044	372918	372918		1358;1359;1360	1	
SIMTIVGHTDVVK	1	Unmodified	1398.7541	0.754086	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	4	2	3	2	62.068	58.938	2;3	3.0854E-17	32276	160513_QHF_FH_JSI10Kac_6	139.48	113.56			0.76234	0.75584	27.333	10	3	Median	0.99404	0.8073	30.042	3	1	Median	0.83803	0.9802	20.541	2	0	Median	0.7802	0.73823	5.5262	3	0	Median	0.55105	0.5555	34.701	2	2	Median	579930000	303390000	276540000	130370000	55359000	75012000	67908000	37403000	30505000	277330000	144790000	132540000	104330000	65840000	38486000	45936	4592	43232	278045;278046;278047;278048;278049;278050;278051;278052;278053;278054;278055	372919;372920;372921;372922;372923;372924;372925;372926;372927;372928;372929;372930	372929			12	
SIMTYVAQFLQYSK	1	Unmodified	1677.8436	0.84362928	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	97.695	91.975	2	6.6087E-15	48665	160513_QHF_FH_JSI12Kac_6	130.15	105.81			0.6409	0.77	6.2525	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6409	0.77	6.2525	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	300860000	171670000	129190000	0	0	0	300860000	171670000	129190000	0	0	0	0	0	0	45937	3811	43233	278056;278057;278058	372931;372932;372933	372931			3	
SINAGGHK	1	Unmodified	782.4035	0.40350064	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.42		6	4						5	3	3	6	3	2.1884	-0.57435	2	0.00041541	292	160511_QHF_FH_JSI11i_3	109.01	72.827			1.0327	0.90438	85.849	14	8	Median	1.0244	0.87755	40.959	3	0	Plateau	0.74863	0.93202	98.575	3	2	Median	0.92808	0.88648	94.423	6	4	Median	0.70767	0.77943	160.45	2	2	Median	2621000000	1367700000	1253400000	475500000	211390000	264110000	929830000	473890000	455940000	1123400000	629310000	494100000	92286000	53077000	39209000	45938	1570	43234	278059;278060;278061;278062;278063;278064;278065;278066;278067;278068;278069;278070;278071;278072;278073	372934;372935;372936;372937;372938;372939;372940;372941;372942;372943;372944;372945;372946;372947;372948;372949;372950;372951;372952;372953;372954;372955;372956;372957;372958;372959;372960;372961;372962;372963;372964;372965;372966;372967	372936			34	
SINDNIAIFTEVQK	1	Unmodified	1590.8253	0.82533668	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								2	5	4	5	77.781	77.182	2;3	1.2692E-52	66738	160511_QHF_FH_JSI12i_2	196.15	159.73			0.9736	1.0118	13.274	15	12	Median	1.0697	0.88955	1.2125	2	1	Median	0.84718	1.0115	10.681	5	4	Median	1.1085	1.0989	16.471	4	3	Median	1.0132	1.1071	12.994	4	4	Median	916390000	461250000	455140000	93279000	39625000	53654000	324200000	169320000	154880000	239570000	118880000	120690000	259340000	133430000	125920000	45939	2252	43235	278074;278075;278076;278077;278078;278079;278080;278081;278082;278083;278084;278085;278086;278087;278088;278089	372968;372969;372970;372971;372972;372973;372974;372975;372976;372977;372978;372979;372980;372981;372982;372983;372984;372985;372986	372972			19	
SINDPEHPLTLEELNVVEQVR	0	Unmodified	2430.2391	0.23906766	5584	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.583	85.912	3	2.5239E-46	75585	160511_QHF_FH_JSI11i_2	202.47	194.63			0.9774	1.0587	2.5654	4	1	Median	1.1968	1.0169	NaN	1	0	Median	0.88604	1.0802	NaN	1	1	Median	1.0144	1.0533	NaN	1	0	Median	0.94171	1.0641	NaN	1	0	Median	233570000	122340000	111230000	52043000	27624000	24420000	54121000	30491000	23631000	76900000	37722000	39177000	50504000	26502000	24003000	45940	5584	43236	278090;278091;278092;278093	372987;372988;372989;372990;372991;372992;372993	372992			7	
SINEFWNK	1	Unmodified	1036.4978	0.49779495	4845	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.046	52.928	2	0.00080386	46801	160511_QHF_FH_JSI11i_3	98.009	66.719			1.0612	1.0323	12.082	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0057	0.94776	NaN	1	0	Median	1.1197	1.1244	NaN	1	1	Median	156630000	66784000	89847000	0	0	0	0	0	0	53972000	21796000	32176000	102660000	44988000	57672000	45941	4845	43237	278094;278095	372994;372995	372994			2	
SINGELYAPLQHVSAVLPGGAADR	0	Unmodified	2434.2605	0.2604718	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	89.935	89.535	3	6.1907E-17	79820	160511_QHF_FH_JSI11i_3	129.23	113.91			0.9996	1.0792	7.1693	6	2	Median	1.3753	1.1545	NaN	1	0	Median	0.85749	1.0395	NaN	1	0	Median	1.0528	1.0033	9.9245	2	2	Median	0.99495	1.0937	1.4879	2	0	Median	321750000	159760000	161990000	34622000	14730000	19892000	52113000	29865000	22248000	142300000	66703000	75598000	92713000	48459000	44254000	45942	4164	43238	278096;278097;278098;278099;278100;278101	372996;372997;372998;372999;373000;373001;373002;373003;373004	372996			9	
SINGILFPGGSVDLR	0	Unmodified	1543.8358	0.83584179	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	1	3	89.446	88.739	2	8.7524E-05	78037	160511_QHF_FH_JSI11i_2	109.96	81.261			1.2391	1.2966	24.516	5	3	Median	NaN	NaN	NaN	0	0	Median	1.2391	1.5099	NaN	1	1	Median	1.3152	1.2966	NaN	1	0	Median	0.86417	0.94171	27.799	3	2	Median	198950000	87209000	111750000	0	0	0	6558000	2410100	4147900	54804000	21662000	33142000	137590000	63138000	74455000	45943	3891	43239	278102;278103;278104;278105;278106	373005;373006;373007;373008;373009;373010	373009			5	
SINHQIESPSER	0	Unmodified	1395.6743	0.67425577	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.75	5.93		2	1						1	2	1	1		15.199	14.816	2;3	0.00010153	12401	160511_QHF_FH_JSI10i_2	84.479	54.225			2.3019	2.1099	100.51	2	1	Median	1.1773	1.0366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.501	4.2948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35780000	10916000	24865000	16800000	4323100	12477000	0	0	0	18980000	6592700	12388000	0	0	0	45944	5463	43240	278107;278108;278109;278110	373011;373012;373013;373014;373015	373014			5	
SINIIKK	2	Unmodified	814.52764	0.52763852	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				22.947	21.649	3	0.039617	17449	160511_QHF_FH_JSI9i_3	30.185	7.9481			0.20709	0.17656	NaN	1	1	Median	0.20709	0.17656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9742100	7767400	1974800	9742100	7767400	1974800	0	0	0	0	0	0	0	0	0	45945	1669	43241	278111	373016	373016			1	
SINKLIR	1	Acetyl (K)	884.54435	0.54435122	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.866							1		3		1	2	1	49.455	39.789	2	0.035387	23534	160513_QHF_FH_JSI11Kac_4	73.26	26.834			0.21288	0.20826	29.677	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.17803	0.21258	NaN	1	0	Median	0.21288	0.20826	NaN	1	0	Median	0.32624	0.3517	NaN	1	0	Median	66965000	57117000	9848300	0	0	0	22582000	19867000	2715000	38537000	32949000	5587900	5846100	4300700	1545400	45946	832	43242	278112;278113;278114;278115	373017;373018	373018			2	
SINNAEK	1	Unmodified	774.38718	0.38718187	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	5.88	5	4	1		2	5	3	1		6	6	4	5	5.8393	0.96518	2	0.0037647	3134	160513_QHF_FH_JSI9Kac_3	99.442	19.968			0.95551	0.99499	64.871	19	0	Median	1.2141	1.0201	144.63	4	0	Median	1.0306	1.1752	13.216	6	0	Median	0.92082	0.93186	21.784	4	0	Median	0.891	0.95718	19.297	5	0	Median	24764000000	12787000000	11977000000	3976600000	1757300000	2219300000	7410100000	4100400000	3309600000	6723400000	3408300000	3315200000	6653700000	3521300000	3132400000	45947	1986	43243	278116;278117;278118;278119;278120;278121;278122;278123;278124;278125;278126;278127;278128;278129;278130;278131;278132;278133;278134;278135;278136	373019;373020;373021;373022;373023;373024;373025;373026;373027;373028;373029;373030;373031;373032;373033;373034;373035;373036	373028			18	
SINNAEKR	1	Acetyl (K)	972.49886	0.49885759	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.745						3	2	1			2	3	1	11.624	3.4836	2	6.7928E-06	4902	160513_QHF_FH_JSI11Kac_4	138.98	82.965			0.44052	0.47669	76.656	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0757	1.2751	12.866	2	0	Median	0.28547	0.28055	1.7445	2	0	Median	0.44052	0.47669	NaN	1	1	Median	173530000	117450000	56078000	0	0	0	37261000	15665000	21596000	131600000	98011000	33587000	4672800	3778100	894700	45948	1986	43244	278137;278138;278139;278140;278141;278142	373037;373038;373039;373040;373041;373042;373043	373040	2007		7	
SINNDTTYCIK	1	Unmodified	1327.6078	0.60781569	2858	Q53H82	LACTB2	Beta-lactamase-like protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.829	31.594	2	3.1396E-05	28285	160511_QHF_FH_JSI11i_1	104.79	93.631			0.68979	0.67513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68979	0.67513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45289000	24191000	21098000	0	0	0	0	0	0	45289000	24191000	21098000	0	0	0	45949	2858	43245	278143	373044	373044			1	
SINNPDMR	0	Oxidation (M)	961.42873	0.42872911	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	2	3	2	10.815	8.6258	2	0.0022572	11848	160511_QHF_FH_JSI10i_2	88.294	52.8			1.0982	1.1226	9.8772	8	0	Median	1.5563	1.2909	3.5538	2	0	Median	0.90119	1.0583	NaN	1	0	Median	1.0982	1.1494	7.9676	3	0	Plateau	0.98563	1.0547	5.4893	2	0	Median	567330000	279120000	288210000	136400000	53900000	82500000	135040000	77234000	57803000	183280000	93220000	90056000	112620000	54770000	57849000	45950	1798	43246	278144;278145;278146;278147;278148;278149;278150;278151;278152	373045;373046;373047;373048;373049;373050;373051;373052;373053;373054;373055;373056	373056		1481	12	
SINNPDMR	0	Unmodified	945.43381	0.43381449	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4	1	5	1				1			2	2	2	2	15.717	14.034	2	2.8754E-06	11388	160511_QHF_FH_JSI11i_2	141.39	69.155			1.0475	1.1171	22.474	6	2	Median	1.2121	1.0141	NaN	1	0	Median	0.93921	1.157	NaN	1	1	Median	1.0529	1.0591	47.262	2	0	Median	1.0475	1.1621	10.542	2	1	Median	1324500000	622920000	701600000	229710000	100160000	129550000	133560000	81760000	51800000	628370000	281810000	346550000	332880000	159180000	173700000	45951	1798	43246	278153;278154;278155;278156;278157;278158;278159;278160	373057;373058;373059;373060;373061;373062;373063;373064;373065;373066;373067;373068	373065			12	
SINNYNPK	1	Unmodified	948.46649	0.46649483	5654	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	2	2								2	2			14.27	13.631	2	0.0030173	10986	160511_QHF_FH_JSI9i_1	74.415	29.723			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45952	5654	43247	278161;278162;278163;278164	373069;373070;373071;373072	373070			4	
SINPDEAVAYGAAVQAAILMGDK	1	Oxidation (M)	2319.1417	0.1416618	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.42	101.31	3	9.8717E-15	91865	160511_QHF_FH_JSI12i_1	119.32	100.78			0.9737	0.91223	8.8543	4	0	Median	1.0812	0.88073	NaN	1	0	Median	0.69752	0.84139	NaN	1	0	Median	0.97608	0.94485	NaN	1	0	Median	0.97133	1.0309	NaN	1	0	Median	2310000000	1181500000	1128500000	384880000	174050000	210830000	671140000	363870000	307270000	537990000	264300000	273690000	715960000	379230000	336730000	45953	954;1416	43248	278165;278166;278167;278168	373073;373074;373075;373076;373077	373074		531	5	
SINPDEAVAYGAAVQAAILMGDK	1	Unmodified	2303.1467	0.14674718	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	2.75	13	11	3						1	7	7	5	9	101.99	101.53	2;3	5.0746E-159	90276	160511_QHF_FH_JSI10i_2	344.34	310.56			0.97084	0.94592	11.967	23	7	Median	1.0804	0.90084	13.243	7	2	Median	0.76078	0.91113	7.5335	5	1	Median	0.9541	0.95483	5.4833	5	2	Median	1.0199	1.0987	7.3048	6	2	Median	24054000000	12377000000	11676000000	3957800000	1835700000	2122100000	7632900000	4244700000	3388200000	5807900000	2971600000	2836300000	6655200000	3325300000	3329900000	45954	954;1416	43248	278169;278170;278171;278172;278173;278174;278175;278176;278177;278178;278179;278180;278181;278182;278183;278184;278185;278186;278187;278188;278189;278190;278191;278192;278193;278194;278195;278196	373078;373079;373080;373081;373082;373083;373084;373085;373086;373087;373088;373089;373090;373091;373092;373093;373094;373095;373096;373097;373098;373099;373100;373101;373102;373103;373104;373105;373106;373107;373108;373109;373110;373111;373112;373113;373114;373115;373116;373117;373118;373119;373120;373121	373117			44	
SINPDEAVAYGAAVQAAILSGDK	1	Unmodified	2259.1383	0.13829098	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.714	9	8	3							7	4	5	4	101.47	101.35	2;3	2.1191E-165	92092	160511_QHF_FH_JSI10i_1	390.18	324.68			1.009	0.97211	25.693	20	3	Median	1.1065	0.88707	8.1752	7	2	Median	0.81204	0.87526	2.5224	4	0	Linear	1.013	1.0135	46.417	5	1	Median	0.99519	1.0489	4.7078	4	0	Median	57715000000	30032000000	27683000000	9437000000	4530400000	4906700000	16826000000	9566400000	7260100000	16487000000	8421000000	8066400000	14964000000	7514400000	7449700000	45955	985	43249	278197;278198;278199;278200;278201;278202;278203;278204;278205;278206;278207;278208;278209;278210;278211;278212;278213;278214;278215;278216	373122;373123;373124;373125;373126;373127;373128;373129;373130;373131;373132;373133;373134;373135;373136;373137;373138;373139;373140;373141;373142;373143;373144;373145;373146;373147;373148;373149;373150;373151;373152;373153;373154	373137			33	
SINPDEAVAYGAAVQAAVLMGDK	1	Unmodified	2289.1311	0.13109711	1108	P17066	HSPA6	Heat shock 70 kDa protein 6	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.79	101.71	3	1.4563E-19	92277	160511_QHF_FH_JSI12i_1	134.81	120.41			0.41466	0.46095	5.6033	2	2	Median	NaN	NaN	NaN	0	0	Median	0.40961	0.47958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41978	0.44304	NaN	1	1	Median	673990000	516580000	157410000	0	0	0	350200000	274010000	76191000	0	0	0	323790000	242570000	81220000	45956	1108	43250	278217;278218	373155;373156	373155			2	
SINPLGGFVHYGEVTNDFVMLK	1	Oxidation (M)	2452.2097	0.20968178	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	3	4	97.242	94.627	2;3	1.1299E-46	89745	160511_QHF_FH_JSI11i_3	204.65	191.04			1.0155	1.017	20.085	13	1	Median	1.1805	1.017	8.3195	3	0	Plateau	0.821	1.0146	31.735	3	1	Plateau	0.92727	1.0509	11.589	3	0	Plateau	0.96057	0.97582	15.507	4	0	Median	7011200000	3418600000	3592600000	713390000	319430000	393960000	1081700000	550920000	530810000	2482600000	1166400000	1316200000	2733500000	1381800000	1351700000	45957	1484	43251	278219;278220;278221;278222;278223;278224;278225;278226;278227;278228;278229;278230;278231	373157;373158;373159;373160;373161;373162;373163;373164;373165;373166;373167;373168;373169;373170;373171;373172;373173;373174;373175;373176;373177;373178;373179	373157		1166	23	
SINPLGGFVHYGEVTNDFVMLK	1	Unmodified	2436.2148	0.21476716	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.13		11	7						7	5	7	6	7	98.432	96.229	2;3;4	2.8059E-188	48388	160513_QHF_FH_JSI10Kac_6	348.17	292.45			0.95865	0.98742	13.102	24	4	Median	1.2454	1.0526	11.33	5	1	Median	0.82242	0.96977	16.83	6	0	Median	0.90414	0.88647	8.0471	6	1	Median	0.99265	1.0147	10.195	7	2	Median	34145000000	17856000000	16288000000	5515500000	2459300000	3056200000	6120800000	3328200000	2792600000	11427000000	6054600000	5372300000	11081000000	6014300000	5067100000	45958	1484	43251	278232;278233;278234;278235;278236;278237;278238;278239;278240;278241;278242;278243;278244;278245;278246;278247;278248;278249;278250;278251;278252;278253;278254;278255;278256	373180;373181;373182;373183;373184;373185;373186;373187;373188;373189;373190;373191;373192;373193;373194;373195;373196;373197;373198;373199;373200;373201;373202;373203;373204;373205;373206;373207;373208;373209	373208			30	
SINQGLDR	0	Unmodified	901.46174	0.4617438	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2				2	3	2	16.199	13.958	2	0.0015884	11418	160511_QHF_FH_JSI12i_2	87.476	31.8			1.0272	1.0501	9.9474	4	1	Median	NaN	NaN	NaN	0	0	Median	0.76576	0.91351	NaN	1	0	Median	1.05	1.0501	4.8867	2	1	Median	1.0298	1.1512	NaN	1	0	Median	427590000	226880000	200710000	0	0	0	187400000	97454000	89950000	117580000	64625000	52954000	122610000	64806000	57801000	45959	1357	43252	278257;278258;278259;278260;278261;278262;278263	373210;373211;373212;373213;373214;373215;373216;373217	373210			8	
SINQPVAFVR	0	Unmodified	1129.6244	0.62439245	4606	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.8		1	2					5	2	1	1	4	4	55.773	48.649	2	6.6147E-14	41711	160511_QHF_FH_JSI12i_3	155.88	101.72			0.9148	0.99961	28.01	9	3	Median	1.342	1.1409	NaN	1	0	Median	0.84574	0.99961	NaN	1	1	Median	0.9148	0.87339	34.614	3	2	Median	0.87662	0.98437	29.713	4	0	Median	2094700000	1029600000	1065100000	6808200	3127800	3680300	4004200	2118400	1885800	826230000	369120000	457110000	1257700000	655250000	602400000	45960	4606	43253	278264;278265;278266;278267;278268;278269;278270;278271;278272;278273	373218;373219;373220;373221;373222;373223;373224;373225;373226;373227;373228;373229;373230	373229			12	
SINQQSGAHVELQR	0	Unmodified	1565.791	0.79101686	4118	Q96I24	FUBP3	Far upstream element-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.06		5	4					1	1	4	2	2	3	24.17	22.076	2;3	4.4302E-15	18605	160511_QHF_FH_JSI11i_3	165.7	116.33			0.96217	0.92825	28.863	10	2	Median	1.0491	0.87139	45.876	4	2	Median	0.70782	0.87143	NaN	1	0	Median	0.96909	0.91765	10.969	2	0	Median	1.0026	0.98878	22.211	3	0	Median	554150000	292990000	261170000	31218000	14564000	16654000	139370000	72829000	66545000	213190000	108610000	104580000	170370000	96978000	73390000	45961	4118	43254	278274;278275;278276;278277;278278;278279;278280;278281;278282;278283;278284	373231;373232;373233;373234;373235;373236;373237;373238;373239;373240;373241	373231			11	
SINSILDYISTSK	1	Unmodified	1439.7508	0.75077476	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	0.462		4	9							2	4	4	3	94.892	94.56	2;3	1.6879E-31	77270	160511_QHF_FH_JSI9i_3	226.73	175.86			1.5427	0.87096	73.648	11	8	Linear	0.54055	0.45684	101.96	2	1	Median	0.82198	0.99601	77.539	3	2	Median	0.58025	0.54644	82.523	4	3	Median	0.43038	0.45688	91.241	2	2	Median	1657200000	1054800000	602430000	314310000	199490000	114830000	309940000	206860000	103080000	493610000	266740000	226870000	539320000	381670000	157660000	45962	1943	43255	278285;278286;278287;278288;278289;278290;278291;278292;278293;278294;278295;278296;278297	373242;373243;373244;373245;373246;373247;373248;373249;373250;373251;373252;373253;373254;373255;373256;373257;373258;373259;373260	373253			19	
SINTEVVACSVDSQFTHLAWINTPR	0	Unmodified	2844.3865	0.38647695	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		3	2						3	1	2	2	3	96.765	93.657	3	1.0147E-129	43528	160513_QHF_FH_JSI12Kac_6	253.29	233.75			0.95579	0.98591	18.536	8	3	Median	1.216	1.0678	NaN	1	0	Median	0.70651	0.85102	8.5037	2	1	Median	0.93349	0.89681	12.38	2	0	Median	1.1312	1.1799	16.972	3	2	Median	1858400000	957130000	901280000	103470000	45804000	57664000	487170000	340160000	147010000	565490000	286900000	278590000	702290000	284270000	418020000	45963	2364	43256	278298;278299;278300;278301;278302;278303;278304;278305	373261;373262;373263;373264;373265;373266;373267;373268;373269	373268			9	
SIPAGAEPGEK	1	Unmodified	1054.5295	0.52948901	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	23.746	20.155	2	2.6226E-05	17330	160511_QHF_FH_JSI10i_1	99.815	85.658			0.53237	0.52552	43.044	7	0	Median	0.53237	0.43328	NaN	1	0	Median	0.58594	0.69898	61.661	2	0	Median	0.71043	0.68411	54.827	2	0	Median	0.68424	0.73349	47.153	2	0	Median	1208900000	804910000	404020000	285770000	180480000	105290000	276750000	199810000	76949000	324610000	206060000	118550000	321800000	218560000	103230000	45964	4795	43257	278306;278307;278308;278309;278310;278311;278312	373270;373271;373272;373273;373274;373275;373276;373277;373278	373275			9	
SIPAGAEPGEKGSAR	1	Acetyl (K)	1467.7318	0.73177065	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.64					1	5	4			1	5	2	2	34.925	24.915	2;3	1.7088E-10	16150	160513_QHF_FH_JSI12Kac_3	126.1	80.844			1.3083	1.5617	74.251	9	0	Median	2.5501	2.0964	NaN	1	0	Median	1.5364	1.8168	28.134	4	0	Median	0.48947	0.48544	3.9364	2	0	Median	0.48863	0.53655	13.159	2	0	Median	252310000	125350000	126960000	69272000	19265000	50007000	62145000	23972000	38173000	59052000	40075000	18977000	61839000	42037000	19802000	45965	4795	43258	278313;278314;278315;278316;278317;278318;278319;278320;278321;278322	373279;373280;373281;373282;373283;373284;373285;373286;373287;373288;373289;373290;373291	373287	3236		13	
SIPAGAEPGEKGSARK	2	Acetyl (K)	1595.8267	0.82673367	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	1	0	0	2	By MS/MS		By MS/MS		15	1							1		1	1		1		31.346	22.224	3	0.026891	12056	160513_QHF_FH_JSI9Kac_6	44.196	16.86			0.85244	0.855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85244	0.855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3845900	1784100	2061800	0	0	0	0	0	0	3845900	1784100	2061800	0	0	0	45966	4795	43259	278323;278324	373292;373293	373293	3236		2	
SIPAITR	0	Unmodified	756.44939	0.4493882	4447	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		31.499	30.839	2	0.037218	26127	160511_QHF_FH_JSI11i_2	48.756	15.398			0.78929	0.86368	8.9641	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66349	0.81063	NaN	1	0	Median	0.93896	0.92019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93586000	48753000	44833000	0	0	0	43750000	22131000	21619000	49836000	26623000	23213000	0	0	0	45967	4447	43260	278325;278326	373294	373294			1	
SIPAYLAETLYYAMK	1	Oxidation (M)	1748.8695	0.86950968	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	9.2	6.81		3	2						5	4		3	3	96.148	91.519	2;3	3.9506E-05	90034	160511_QHF_FH_JSI11i_3	95.631	84.587			1.008	1.0036	39.015	10	2	Median	0.94641	0.79847	34.586	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0599	2.3974	55.708	3	0	Plateau	0.98412	1.0418	18.491	3	1	Median	675320000	308380000	366940000	199660000	91884000	107770000	0	0	0	215730000	88365000	127370000	259940000	128130000	131800000	45968	916	43261	278327;278328;278329;278330;278331;278332;278333;278334;278335;278336	373295;373296;373297;373298;373299;373300;373301;373302;373303	373295		494	8	
SIPAYLAETLYYAMK	1	Unmodified	1732.8746	0.87459506	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.46		8	7						8	5	6	6	6	100.41	97.425	2;3	2.0677E-40	88968	160511_QHF_FH_JSI12i_3	208.74	168.03			1.0977	1.1586	15.067	23	1	Median	1.236	1.0333	11.958	5	0	Median	0.96525	1.1396	10.191	6	1	Median	1.1209	1.0685	17.898	6	0	Median	1.0766	1.172	18.387	6	0	Median	9731800000	4823600000	4908200000	1623200000	763970000	859180000	2345400000	1268300000	1077100000	2641200000	1234700000	1406400000	3122100000	1556600000	1565500000	45969	916	43261	278337;278338;278339;278340;278341;278342;278343;278344;278345;278346;278347;278348;278349;278350;278351;278352;278353;278354;278355;278356;278357;278358;278359	373304;373305;373306;373307;373308;373309;373310;373311;373312;373313;373314;373315;373316;373317;373318;373319;373320;373321;373322;373323;373324;373325;373326;373327;373328;373329;373330;373331;373332;373333;373334;373335;373336;373337;373338;373339;373340;373341;373342;373343	373335			40	
SIPDTYAEHLIAGGLMTQEEVSEIK	1	Unmodified	2730.3422	0.3422121	4117	Q96HY7	DHTKD1	Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	100.66	100.45	3	3.2678E-05	86327	160511_QHF_FH_JSI12i_2	68.361	55.806			0.95852	1.0774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95852	1.0774	NaN	1	0	Median	69175000	38778000	30398000	0	0	0	0	0	0	0	0	0	69175000	38778000	30398000	45970	4117	43262	278360	373344	373344			0	
SIPGAAEKPK	2	Acetyl (K)	1038.571	0.5709599	5140	Q9NYZ3	GTSE1	G2 and S phase-expressed protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	38.748	29.916	2	0.0064813	17286	160513_QHF_FH_JSI11Kac_3	64.04	41.954			0.89587	0.96449	0.71569	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82411	0.96449	NaN	1	0	Median	1.0228	0.97464	NaN	1	0	Median	0.89587	0.9614	NaN	1	0	Median	15337000	7875700	7461000	0	0	0	4466700	2215700	2251000	4549600	2157400	2392200	6320400	3502600	2817800	45971	5140	43263	278361;278362;278363	373345;373346;373347	373345	3320		3	
SIPICTLK	1	Unmodified	930.52084	0.52083858	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	5.02	4	5					1	1		2	3	3	3	48.965	46.154	2	0.0020172	41446	160511_QHF_FH_JSI10i_1	83.265	25.705			0.8739	0.97246	28.625	10	3	Median	1.0841	0.92305	51.785	2	2	Median	0.84083	1.0019	8.7188	2	1	Median	0.65429	0.67178	21.192	3	0	Median	0.99359	1.0756	7.3944	3	0	Median	1832000000	1001300000	830750000	186330000	100410000	85911000	478590000	273450000	205130000	728580000	400360000	328220000	438550000	227060000	211480000	45972	1208	43264	278364;278365;278366;278367;278368;278369;278370;278371;278372;278373;278374	373348;373349;373350;373351;373352;373353;373354;373355;373356;373357;373358;373359;373360;373361	373355			14	
SIPLAMAPVFEQK	1	Unmodified	1429.7639	0.7639224	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								3	3	2	2	86.396	85.74	2;3	7.9062E-05	75310	160511_QHF_FH_JSI11i_2	71.548	65.515			1.0783	0.98044	20.213	9	3	Median	1.2614	1.0483	18.757	3	2	Plateau	0.66623	0.82061	19.137	2	1	Median	1.1464	1.1307	9.3898	2	0	Median	1.0547	1.1505	22.619	2	0	Median	188300000	97172000	91124000	58200000	28230000	29970000	38147000	23114000	15033000	56130000	27634000	28496000	35818000	18194000	17625000	45973	5234	43265	278375;278376;278377;278378;278379;278380;278381;278382;278383;278384	373362;373363;373364;373365;373366;373367;373368;373369;373370;373371;373372;373373;373374;373375;373376;373377	373372			16	
SIPLDEGEDEAQR	0	Unmodified	1457.6634	0.66341631	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	39.912	36.481	2	1.1027E-10	33129	160511_QHF_FH_JSI12i_1	152.07	137.86			1.1097	1.1951	7.8413	6	0	Median	1.4814	1.2354	NaN	1	0	Median	1.0228	1.2216	NaN	1	0	Median	1.1199	1.0856	10.482	2	0	Median	1.089	1.1721	6.4176	2	0	Median	705880000	360700000	345180000	148850000	75698000	73157000	185630000	99502000	86125000	208220000	96351000	111860000	163180000	89146000	74034000	45974	2517	43266	278385;278386;278387;278388;278389;278390	373378;373379;373380;373381;373382;373383;373384;373385;373386	373381			9	
SIPLDEGEDEAQRR	0	Unmodified	1613.7645	0.76452734	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.64	3	7	2							1	4	4	3	31.671	31.104	2;3	4.4518E-07	27278	160511_QHF_FH_JSI10i_2	110.29	104.86			0.93366	1.0455	11.559	11	3	Median	1.2753	1.1204	NaN	1	0	Median	0.86562	1.0455	12.707	3	1	Median	1.0026	0.99241	12.363	4	2	Median	1.0378	1.0403	12.42	3	0	Median	897200000	437740000	459460000	99618000	54472000	45146000	236590000	119880000	116710000	375810000	163560000	212250000	185190000	99831000	85356000	45975	2517	43267	278391;278392;278393;278394;278395;278396;278397;278398;278399;278400;278401;278402	373387;373388;373389;373390;373391;373392;373393;373394;373395;373396;373397;373398;373399;373400;373401;373402;373403;373404;373405;373406	373402			20	
SIPMTVDFIR	0	Unmodified	1177.6165	0.61652988	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	4.37	1	4	3						1	1	3	3	2	80.003	78.415	2	7.0787E-10	68392	160511_QHF_FH_JSI12i_2	138.1	126.88			0.99703	1.1187	19.064	9	0	Median	1.1935	1.013	NaN	1	0	Median	0.90994	1.142	1.1941	3	0	Plateau	0.9803	0.98971	21.561	3	0	Median	1.2163	1.317	25.538	2	0	Median	1373300000	679840000	693440000	245310000	103870000	141440000	355970000	178490000	177480000	476930000	252210000	224710000	295070000	145260000	149810000	45976	772	43268	278403;278404;278405;278406;278407;278408;278409;278410;278411	373407;373408;373409;373410;373411;373412;373413;373414;373415;373416;373417;373418;373419;373420;373421	373410			15	
SIPPEGLAQSELMR	0	Unmodified	1526.7763	0.776278	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								1	2	2		65.822	65.103	2	0.00067649	57098	160511_QHF_FH_JSI11i_2	89.403	52.879			0.72689	0.66973	30.453	4	4	Median	0.70621	0.60101	NaN	1	1	Median	0.48998	0.60693	NaN	1	1	Median	0.91325	0.92271	31.394	2	2	Median	NaN	NaN	NaN	0	0	Median	297850000	183970000	113890000	81282000	45433000	35850000	78593000	56111000	22482000	137980000	82422000	55555000	0	0	0	45977	5502	43269	278412;278413;278414;278415;278416	373422;373423;373424;373425;373426	373424			5	
SIPTDNQIK	1	Unmodified	1014.5346	0.53457439	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.3	7	1				3				2	4	3	2	27.849	25.058	2	0.00015328	21508	160511_QHF_FH_JSI9i_1	106.36	68.798			0.49726	0.54639	39.302	11	6	Median	0.66831	0.54841	42.573	2	2	Median	0.42228	0.50581	41.591	4	2	Median	0.42597	0.41742	52.195	3	2	Plateau	0.77161	0.83313	24.637	2	0	Median	10147000000	7003400000	3143900000	2389300000	1557100000	832200000	2818500000	2034600000	783900000	3734700000	2752000000	982730000	1204600000	659630000	545010000	45978	1080	43270	278417;278418;278419;278420;278421;278422;278423;278424;278425;278426;278427	373427;373428;373429;373430;373431;373432;373433;373434;373435;373436;373437;373438	373434			12	
SIPTLISR	0	Unmodified	885.52837	0.5283668	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			51.786	50.209	2	0.0074934	41152	160511_QHF_FH_JSI9i_3	66.073	21.381			1.3906	1.348	20.656	2	0	Median	1.9039	1.56	NaN	1	0	Median	1.0157	1.1648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141430000	64824000	76608000	66825000	24344000	42481000	74606000	40480000	34127000	0	0	0	0	0	0	45979	1145	43271	278428;278429	373439	373439			1	
SIPVLAK	1	Unmodified	726.46398	0.46397563	2715	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	4.78	4	4	3					2		3	3	3	4	43.053	40.681	2	0.015357	36581	160511_QHF_FH_JSI11i_1	64.776	20.166			1.0584	1.1532	20.939	13	1	Median	1.0028	0.84772	29.051	3	1	Plateau	0.74568	0.91476	15.464	3	0	Median	1.2409	1.2328	4.677	3	0	Median	1.0378	1.1613	16.331	4	0	Median	1807500000	906560000	900900000	353160000	169640000	183520000	456120000	249440000	206680000	542000000	258640000	283360000	456170000	228830000	227350000	45980	2715	43272	278430;278431;278432;278433;278434;278435;278436;278437;278438;278439;278440;278441;278442	373440;373441;373442;373443;373444;373445;373446;373447;373448;373449;373450;373451;373452;373453;373454;373455;373456;373457;373458;373459;373460;373461;373462;373463;373464;373465;373466;373467	373441			28	
SIQADGLVWGSSK	1	Unmodified	1346.683	0.68302954	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.47	4	6	4				2		2	4	5	5	4	60.837	58.77	2;3	6.6139E-41	53209	160511_QHF_FH_JSI10i_1	203.61	155.19			0.95542	0.96486	14.113	16	1	Median	1.038	0.84899	5.3328	3	0	Median	0.74298	0.93703	10.34	4	0	Linear	0.97977	0.98219	18.654	5	1	Median	0.96349	1.0542	10.749	4	0	Median	4538600000	2314100000	2224500000	721700000	327650000	394050000	1150500000	638070000	512430000	1331500000	644920000	686560000	1334900000	703440000	631470000	45981	1245	43273	278443;278444;278445;278446;278447;278448;278449;278450;278451;278452;278453;278454;278455;278456;278457;278458;278459;278460	373468;373469;373470;373471;373472;373473;373474;373475;373476;373477;373478;373479;373480;373481;373482;373483;373484;373485;373486;373487;373488;373489;373490;373491;373492;373493;373494;373495;373496;373497;373498;373499;373500;373501;373502	373483			35	
SIQCLTVHK	1	Unmodified	1084.5699	0.56991404	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.43	4.75		3	3						1		3	2	2	24.433	23.859	2;3	0.00013938	19550	160511_QHF_FH_JSI12i_3	107.79	50.229			0.7937	0.8264	130.41	6	5	Median	NaN	NaN	NaN	0	0	Median	1.1897	1.4753	107.71	3	2	Median	0.10037	0.099302	NaN	1	1	Median	0.7937	0.79921	50.604	2	2	Median	1196000000	789710000	406320000	0	0	0	145970000	63559000	82409000	26585000	25175000	1410800	1023500000	700980000	322500000	45982	472	43274	278461;278462;278463;278464;278465;278466;278467	373503;373504;373505;373506;373507;373508;373509	373509			7	
SIQCLTVHKNGGK	2	Acetyl (K)	1482.7613	0.76129664	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		40.143	30.599	3	0.0014552	16851	160513_QHF_FH_JSI11Kac_6	67.997	47.987			1.0205	0.98822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0205	0.98822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8476100	4193400	4282800	0	0	0	0	0	0	8476100	4193400	4282800	0	0	0	45983	472	43275	278468	373510	373510	242		1	
SIQDLTVTGTEPGQVSSR	0	Unmodified	1873.9381	0.93813461	322	O43318	MAP3K7	Mitogen-activated protein kinase kinase kinase 7	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			53.572	53.169	2	0.0025719	47956	160511_QHF_FH_JSI10i_1	66.797	52.891			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45984	322	43276	278469	373511	373511			1	
SIQEAPVSEDLVIR	0	Unmodified	1554.8253	0.82533668	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		64.603	64.205	2	5.3352E-10	58396	160511_QHF_FH_JSI11i_1	109.72	85.378			0.9924	1.056	7.925	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85448	0.99842	NaN	1	0	Median	1.1526	1.1168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103200000	44789000	58414000	0	0	0	57341000	26804000	30538000	45862000	17985000	27876000	0	0	0	45985	2906	43277	278470;278471;278472	373512;373513	373512			1	
SIQEIQELDK	1	Unmodified	1201.619	0.6190323	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.13	4	2				2	3			2	4	1	4	50.645	47.573	2	2.6351E-16	42787	160511_QHF_FH_JSI10i_1	169.37	110.13			0.95829	0.89466	25.882	8	4	Median	1.2114	0.99797	10.646	2	1	Median	1.0381	1.2265	36.686	3	2	Median	0.88459	0.8572	NaN	1	0	Median	0.73104	0.79076	12.65	2	1	Median	2381300000	1210200000	1171100000	450010000	207250000	242760000	606050000	293890000	312160000	655550000	351390000	304160000	669710000	357650000	312060000	45986	1773	43278	278473;278474;278475;278476;278477;278478;278479;278480;278481;278482;278483	373514;373515;373516;373517;373518;373519;373520;373521;373522;373523;373524;373525;373526;373527;373528	373521			15	
SIQEIQELDKDDESLRK	2	Unmodified	2045.0277	0.027677899	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	3.58	3.77		6	5						1	2	4	5	1	50.584	49.819	3;4	5.061E-08	44203	160511_QHF_FH_JSI10i_2	128.26	116.41			0.78637	0.8026	29.176	11	2	Median	0.82878	0.69208	4.7006	2	0	Median	0.70861	0.83968	43.564	4	2	Median	0.79992	0.79479	12.724	4	0	Median	0.82421	0.83297	NaN	1	0	Median	4565400000	2224800000	2340600000	620670000	246820000	373860000	1314500000	699670000	614840000	2453400000	1178200000	1275200000	176830000	100110000	76717000	45987	1773	43279	278484;278485;278486;278487;278488;278489;278490;278491;278492;278493;278494;278495	373529;373530;373531;373532;373533;373534;373535;373536;373537;373538;373539;373540;373541;373542;373543;373544;373545;373546;373547;373548;373549;373550;373551;373552;373553;373554;373555;373556;373557;373558;373559	373554			31	
SIQFVDWCPTGFK	1	Unmodified	1583.7442	0.74424959	2073;2074	P68363;P68366	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.26	4	7	4						3	2	5	6	5	88.457	86.577	2;3	8.6942E-20	40513	160513_QHF_FH_JSI12Kac_6	188.91	142.75			0.96955	0.92048	31.902	17	4	Median	1.0857	0.90782	6.478	2	1	Median	0.85656	1.0989	21.488	5	1	Median	0.81266	0.76781	12.809	5	1	Median	1.345	1.3985	44.732	5	1	Median	2582300000	1416600000	1165700000	273540000	145330000	128210000	486040000	279110000	206930000	1138300000	648860000	489450000	684460000	343310000	341150000	45988	2073;2074	43280	278496;278497;278498;278499;278500;278501;278502;278503;278504;278505;278506;278507;278508;278509;278510;278511;278512;278513	373560;373561;373562;373563;373564;373565;373566;373567;373568;373569;373570;373571;373572;373573;373574;373575;373576;373577;373578;373579;373580;373581;373582;373583;373584;373585;373586;373587;373588;373589;373590;373591;373592	373591			33	
SIQGDGEGDGDLK	1	Unmodified	1289.5735	0.57353867	4649	Q9H115	NAPB	Beta-soluble NSF attachment protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.954	29.387	2	0.057939	26250	160511_QHF_FH_JSI12i_1	35.541	18.029			1.0211	1.0719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0211	1.0719	NaN	1	0	Median	598830000	286070000	312760000	0	0	0	0	0	0	0	0	0	598830000	286070000	312760000	45989	4649	43281	278514	373593	373593			1	
SIQGHHVCLLVK	1	Unmodified	1389.7551	0.75508905	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	3	5	1	1	40.277	33.53	3;4	0.00021109	18434	160513_QHF_FH_JSI10Kac_6	80.014	58.256			1.2801	1.2169	44.013	10	3	Median	1.3175	1.4766	18.598	3	0	Plateau	1.2873	1.4431	59.06	5	3	Median	0.73203	0.72214	NaN	1	0	Median	1.2527	1.3478	NaN	1	0	Median	149490000	77658000	71833000	33748000	14852000	18896000	96427000	50849000	45578000	13354000	8792500	4561200	5961700	3164100	2797600	45990	179	43282	278515;278516;278517;278518;278519;278520;278521;278522;278523;278524	373594;373595;373596;373597;373598;373599;373600;373601;373602;373603;373604;373605;373606	373605			12	
SIQGIHPAK	1	Unmodified	949.53451	0.53451481	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	13.277	13.354	2;3	0.010799	10307	160511_QHF_FH_JSI12i_3	44.425	24.121			1.1371	1.1699	64.292	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1371	1.1699	64.292	2	2	Median	174870000	73102000	101770000	0	0	0	0	0	0	0	0	0	174870000	73102000	101770000	45991	4059	43283	278525;278526	373607;373608	373607			2	
SIQGSSTSSSASSTLSHGEVK	1	Unmodified	2035.9658	0.96580592	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.6	4.72		3	1				1			1	1	3		28.346	24.81	3	6.7848E-09	21408	160511_QHF_FH_JSI10i_2	88.755	78.287			1.2579	1.1621	2.7156	2	1	Median	1.3839	1.1846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1435	1.14	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36822000	7728200	29094000	20533000	5371600	15162000	0	0	0	16289000	2356600	13933000	0	0	0	45992	5202	43284	278527;278528;278529;278530;278531	373609;373610;373611;373612;373613;373614	373614			6	
SIQHLALGK	1	Unmodified	965.56581	0.56581494	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		28.804	27.99	2;3	3.5787E-05	23866	160511_QHF_FH_JSI11i_3	99.802	60.26			1.155	0.9513	32.766	5	0	Median	1.155	0.9513	NaN	1	0	Median	1.4191	1.6275	12.885	2	0	Median	0.95216	0.88762	3.9689	2	0	Median	NaN	NaN	NaN	0	0	Median	434400000	218930000	215480000	67799000	28324000	39475000	136430000	78942000	57485000	230180000	111660000	118520000	0	0	0	45993	3003	43285	278532;278533;278534;278535;278536	373615;373616;373617;373618;373619;373620;373621	373615			6	
SIQLDGLVWGASK	1	Unmodified	1372.7351	0.73506511	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.05	5.21	5	9	2						3	2	5	7	5	83.514	81.738	2;3	3.5348E-22	75494	160511_QHF_FH_JSI10i_1	176.05	143.73			0.95843	0.99562	11.353	18	4	Median	0.99808	0.85413	8.0884	2	0	Median	0.80762	0.9054	9.7828	5	1	Plateau	1.0481	0.99562	8.659	6	2	Median	0.95683	1.0299	11.076	5	1	Median	3252000000	1636100000	1615900000	544060000	236930000	307130000	900940000	516050000	384890000	1025900000	509330000	516600000	781050000	373770000	407280000	45994	1327	43286	278537;278538;278539;278540;278541;278542;278543;278544;278545;278546;278547;278548;278549;278550;278551;278552;278553;278554;278555	373622;373623;373624;373625;373626;373627;373628;373629;373630;373631;373632;373633;373634;373635;373636;373637;373638;373639;373640;373641;373642;373643;373644;373645;373646;373647;373648;373649;373650;373651;373652;373653;373654;373655;373656	373638			35	
SIQMLTLLR	0	Unmodified	1073.6267	0.62670064	2418	Q13445	TMED1	Transmembrane emp24 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		12.8	5.63			1						3	1	2	1		81.639	75.424	2	9.4637E-05	41341	160513_QHF_FH_JSI10Kac_6	113.71	65.964			0.82967	0.87001	13.239	4	0	Median	1.0043	0.87828	NaN	1	0	Median	0.81502	0.94163	12.525	2	0	Median	0.75969	0.74437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	318720000	179880000	138840000	65663000	26697000	38966000	211220000	130600000	80612000	41841000	22575000	19267000	0	0	0	45995	2418	43287	278556;278557;278558;278559	373657;373658;373659;373660	373660			4	
SIQMLTLLR	0	Oxidation (M)	1089.6216	0.62161526	2418	Q13445	TMED1	Transmembrane emp24 domain-containing protein 1	yes	yes	0	0	1	0	By MS/MS				15	0								2		2				74.208	63.66	2	0.021222	33547	160513_QHF_FH_JSI9Kac_5	57.59	34.85			1.1548	0.98272	NaN	1	1	Median	1.1548	0.98272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4730100	2400300	2329800	4730100	2400300	2329800	0	0	0	0	0	0	0	0	0	45996	2418	43287	278560;278561	373661;373662	373662			2	
SIQPEEK	1	Unmodified	829.41815	0.41814765	4959	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		8.673	8.5503	2	0.0061244	6362	160511_QHF_FH_JSI10i_1	80.229	29.263			0.7348	0.72228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7348	0.72228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	182750000	135610000	47141000	0	0	0	0	0	0	182750000	135610000	47141000	0	0	0	45997	4959	43288	278562;278563	373663;373664;373665	373665			3	
SIQSGPLK	1	Unmodified	828.47052	0.47051757	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	2	2	3	18.506	17.949	2	0.0015762	14584	160511_QHF_FH_JSI11i_2	87.639	20.607			1.2372	1.2021	14.822	9	0	Median	1.2955	1.0836	4.7914	2	0	Median	0.85446	1.0235	2.1165	2	0	Median	1.3754	1.3726	17.405	2	0	Median	1.1002	1.2167	8.7277	3	0	Plateau	1805600000	837000000	968590000	182840000	80830000	102010000	496260000	239780000	256480000	544280000	244490000	299800000	582200000	271900000	310300000	45998	2780	43289	278564;278565;278566;278567;278568;278569;278570;278571;278572	373666;373667;373668;373669;373670;373671;373672;373673;373674;373675;373676;373677;373678;373679	373676			14	
SIQTPQSHGTLTAELWDNK	1	Unmodified	2125.044	0.043996665	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	61.528	60.936	2;3	3.6855E-16	52522	160511_QHF_FH_JSI12i_3	150.94	123.09			0.95449	0.94565	9.6946	4	2	Median	1.1006	0.96928	NaN	1	0	Median	0.65921	0.81675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95449	0.97271	7.4788	2	2	Median	506570000	240850000	265720000	48558000	23735000	24823000	80744000	39307000	41437000	0	0	0	377270000	177810000	199460000	45999	5646	43290	278573;278574;278575;278576;278577	373680;373681;373682;373683	373682			4	
SIQVDGK	1	Unmodified	745.39702	0.39701828	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2			1	1	1	2	17.753	8.2713	2	0.0096595	7777	160513_QHF_FH_JSI11Kac_4	84.498	28.376			1.138	1.1064	25.346	5	1	Median	1.3373	1.067	NaN	1	0	Median	1.6268	1.9068	NaN	1	1	Median	1.0431	1.0247	NaN	1	0	Median	1.0894	1.1673	7.5838	2	0	Median	73699000	34860000	38839000	33845000	14580000	19265000	5280400	2218000	3062400	16477000	7964500	8512300	18097000	10098000	7999200	46000	2009;2722	43291	278578;278579;278580;278581;278582	373684;373685;373686;373687;373688;373689;373690	373684			7	
SIRDDIPSTQGNLVK	1	Unmodified	1641.8686	0.86859848	2205	Q03167	TGFBR3	Transforming growth factor beta receptor type 3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			46.634	45.072	3	0.00071396	37617	160511_QHF_FH_JSI10i_3	63.037	44.673			0.79532	0.9353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79532	0.9353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26774000	13717000	13057000	0	0	0	26774000	13717000	13057000	0	0	0	0	0	0	46001	2205	43292	278583	373691	373691			1	
SIRDTPAK	1	Unmodified	886.48723	0.48723027	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.24		6	7					3	4	5	5	6	4	7.1731	4.067	2;3	0.0017211	4174	160511_QHF_FH_JSI11i_3	82.645	33.287			0.98425	0.96975	13.71	20	1	Median	1.1176	0.94674	6.2827	5	0	Median	0.81206	0.96785	13.498	5	0	Median	1.0758	1.0613	13.712	6	1	Median	0.72327	0.71113	17.002	4	0	Linear	18700000000	9299300000	9401000000	10431000000	5050000000	5381100000	4915700000	2660400000	2255300000	2767900000	1273400000	1494500000	585570000	315460000	270100000	46002	857	43293	278584;278585;278586;278587;278588;278589;278590;278591;278592;278593;278594;278595;278596;278597;278598;278599;278600;278601;278602;278603	373692;373693;373694;373695;373696;373697;373698;373699;373700;373701;373702;373703;373704;373705;373706;373707;373708;373709;373710;373711;373712;373713;373714;373715;373716	373694			25	
SIRDTPAKNAQK	2	Acetyl (K)	1369.7314	0.73137672	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.696							1	3	4	2	2	2	2	18.819	10.254	3	0.0017834	7435	160513_QHF_FH_JSI9Kac_5	74.611	60.376			0.95382	1.0048	11.122	8	0	Median	1.1618	0.99657	5.5717	2	0	Median	0.95382	1.1352	0.81497	2	0	Median	0.9462	0.92545	9.8447	2	0	Median	0.84807	0.92539	13.424	2	0	Median	84807000	42248000	42559000	22280000	10743000	11537000	21070000	10997000	10072000	17690000	8744600	8945300	23768000	11763000	12005000	46003	857	43294	278604;278605;278606;278607;278608;278609;278610;278611	373717;373718;373719;373720;373721;373722	373717	542		6	
SIRPDNMSEYSK	1	Oxidation (M)	1441.6507	0.65074314	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			13							3	5	4	1	19.873	19.193	2;3	0.0011056	20822	160511_QHF_FH_JSI11i_3	65.043	58.004			1.1422	1.2	87.762	13	1	Median	2.0134	1.6438	79.071	3	0	Plateau	3.3806	3.9464	92.732	5	1	Median	1.0984	1.0356	18.344	4	0	Median	0.6644	0.70118	NaN	1	0	Median	956930000	426830000	530100000	201370000	63319000	138050000	334480000	132340000	202150000	402660000	220810000	181850000	18415000	10362000	8053500	46004	2438;3882	43295	278612;278613;278614;278615;278616;278617;278618;278619;278620;278621;278622;278623;278624	373723;373724;373725;373726;373727	373724		1956	5	
SIRPDNMSEYSK	1	Unmodified	1425.6558	0.65582851	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	5	4	4	1	27.582	24.396	2;3	1.768E-42	20165	160511_QHF_FH_JSI10i_3	208.51	193.31			0.98504	0.97855	27.277	14	1	Median	1.2623	1.0584	27.157	5	0	Median	0.70649	0.83793	32.297	4	1	Median	1.0662	1.0217	9.9288	4	0	Median	0.94964	1.0459	NaN	1	0	Median	3499800000	1756200000	1743600000	799650000	347400000	452250000	1019800000	539200000	480640000	1676000000	867140000	808820000	4335800	2443800	1892100	46005	2438;3882	43295	278625;278626;278627;278628;278629;278630;278631;278632;278633;278634;278635;278636;278637;278638	373728;373729;373730;373731;373732;373733;373734;373735;373736;373737;373738;373739;373740;373741;373742;373743;373744;373745;373746	373730			19	
SISADDDLQESSR	0	Unmodified	1421.627	0.62703081	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	25.813	25.244	2	0.00028689	22480	160511_QHF_FH_JSI12i_1	92.112	81.588			1.0993	1.1371	6.3959	4	0	Linear	1.2454	1.0119	NaN	1	0	Median	0.88688	1.0294	NaN	1	0	Median	1.2002	1.1649	NaN	1	0	Median	1.007	1.0404	NaN	1	0	Median	284660000	129200000	155460000	58931000	23856000	35076000	71223000	40007000	31216000	81822000	32318000	49503000	72679000	33018000	39661000	46006	1142	43296	278639;278640;278641;278642	373747;373748;373749	373747			3	
SISDAPAPAYHDPLYLEDQVSHR	0	Unmodified	2580.2245	0.22448023	4745	Q9H6H4	REEP4	Receptor expression-enhancing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.215	63.072	4	1.7212E-11	56004	160511_QHF_FH_JSI11i_3	107.08	98.863			1.1908	1.1553	1.0575	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2458	1.164	NaN	1	0	Median	1.1383	1.1467	NaN	1	0	Median	178460000	85706000	92758000	0	0	0	0	0	0	96673000	44636000	52037000	81792000	41071000	40721000	46007	4745	43297	278643;278644	373750;373751;373752	373750			3	
SISDMWTMVK	1	Unmodified	1196.557	0.55696609	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	77.6	76.376	2	0.042915	66108	160511_QHF_FH_JSI12i_2	61.78	50.558			0.88206	0.97857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88206	0.97857	NaN	1	0	Median	104420000	53128000	51287000	0	0	0	0	0	0	0	0	0	104420000	53128000	51287000	46008	3503	43298	278645	373753	373753			0	
SISFHPSGDFILVGTQHPTLR	0	Unmodified	2308.1964	0.19641498	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		7.33	6.13			6						3	4	4	1		78.584	75.296	3;4	1.3151E-09	64089	160511_QHF_FH_JSI9i_3	102.33	94.139			1.0399	1.0099	18.631	8	2	Median	1.3444	1.1188	9.8971	3	0	Plateau	0.86357	1.0259	26.225	4	2	Median	0.97435	0.87591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	614120000	332620000	281500000	221870000	103430000	118440000	357900000	214680000	143220000	34351000	14513000	19837000	0	0	0	46009	2226	43299	278646;278647;278648;278649;278650;278651;278652;278653;278654	373754;373755;373756;373757;373758;373759;373760;373761;373762;373763;373764	373758			11	
SISFIPPDGEFELMR	0	Unmodified	1736.8444	0.84435757	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	100.63	100.49	2	1.7708E-07	88350	160511_QHF_FH_JSI9i_2	98.353	80.918			0.93891	1.1194	29.185	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71878	0.91065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2265	1.3759	NaN	1	0	Median	131710000	65086000	66622000	0	0	0	41061000	22921000	18140000	0	0	0	90647000	42165000	48482000	46010	4017	43300	278655;278656;278657;278658;278659	373765;373766;373767;373768;373769	373767			5	
SISGPSVGVMEMR	0	Unmodified	1348.6479	0.64790636	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	56.95	56.535	2	0.001229	49602	160511_QHF_FH_JSI9i_2	75.566	48.893			1.2211	1.0987	14.825	3	2	Plateau	1.2537	1.0521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2036	1.0987	NaN	1	0	Median	1.3954	1.3861	NaN	1	1	Median	148200000	65489000	82714000	64472000	25343000	39129000	0	0	0	40733000	21651000	19082000	42997000	18495000	24503000	46011	3658	43301	278660;278661;278662	373770;373771;373772	373771			3	
SISIGPISK	1	Unmodified	900.52803	0.52803245	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	49.274	48.312	2	0.0019951	42684	160511_QHF_FH_JSI10i_2	66.621	30.741			0.83742	0.8664	40.744	6	2	Median	0.67931	0.5759	40.563	2	2	Median	0.80791	0.99296	NaN	1	0	Median	0.79948	0.7936	NaN	1	0	Median	1.1209	1.1909	32.574	2	0	Median	214780000	110810000	103970000	54946000	30292000	24653000	34425000	19342000	15083000	46508000	25042000	21466000	78903000	36137000	42766000	46012	1621	43302	278663;278664;278665;278666;278667;278668;278669	373773;373774;373775;373776;373777;373778;373779	373778			7	
SISLYYTGEK	1	Unmodified	1159.5761	0.57610486	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.72	4	4	3				1	4	4	4	6	5	5	52.595	47.633	2	6.8724E-34	24283	160513_QHF_FH_JSI12Kac_5	200.05	144.37			1.0442	1.029	12.212	20	1	Median	1.1839	0.9906	18.715	4	0	Median	0.84442	0.99791	13.204	6	0	Median	1.0515	1.0535	1.698	5	1	Median	0.98366	1.0569	10.953	5	0	Median	12470000000	6201100000	6269100000	2370900000	1157900000	1213000000	2994400000	1669200000	1325200000	4078000000	1946200000	2131900000	3026800000	1427800000	1599000000	46013	1154	43303	278670;278671;278672;278673;278674;278675;278676;278677;278678;278679;278680;278681;278682;278683;278684;278685;278686;278687;278688;278689	373780;373781;373782;373783;373784;373785;373786;373787;373788;373789;373790;373791;373792;373793;373794;373795;373796;373797;373798;373799;373800;373801;373802;373803;373804;373805;373806;373807;373808;373809;373810;373811;373812;373813;373814;373815;373816;373817;373818;373819;373820;373821;373822;373823	373810			43	
SISMTTFTQQEIEFLQK	1	Unmodified	2030.003	0.0030430525	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	100.13	100.05	2;3	0.00022196	86231	160511_QHF_FH_JSI12i_2	72.089	58.427			3.8143	3.2291	NaN	1	1	Median	3.8143	3.2291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9739200	2151300	7587800	9739200	2151300	7587800	0	0	0	0	0	0	0	0	0	46014	1774	43304	278690;278691;278692	373824;373825;373826	373824			3	
SISNDDGEEK	1	Unmodified	1092.4571	0.45711193	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				7.3733	6.7309	2	0.016952	4368	160511_QHF_FH_JSI9i_1	50.108	34.226			0.841	0.72181	NaN	1	1	Median	0.841	0.72181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37345000	17820000	19526000	37345000	17820000	19526000	0	0	0	0	0	0	0	0	0	46015	3653	43305	278693	373827	373827			1	
SISNEGLTLNNSHVSK	1	Unmodified	1698.8537	0.8536767	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.49	35.362	3	6.9623E-06	30016	160511_QHF_FH_JSI12i_3	101.3	86.871			0.86314	0.89799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86314	0.89799	NaN	1	0	Median	40250000	23714000	16536000	0	0	0	0	0	0	0	0	0	40250000	23714000	16536000	46016	2278	43306	278694	373828	373828			1	
SISNPPGSNLR	0	Unmodified	1140.5887	0.58873523	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.17		2	3					4		4	2	1	2	28.536	24.04	2	1.5619E-05	20824	160511_QHF_FH_JSI9i_2	105.4	81.242			1.659	1.4747	14.622	5	2	Median	1.917	1.6172	6.941	3	1	Plateau	0.92463	1.1175	NaN	1	1	Median	1.4984	1.4747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132120000	54017000	78102000	87040000	31503000	55537000	43142000	21615000	21526000	1937100	898310	1038800	0	0	0	46017	4714	43307	278695;278696;278697;278698;278699;278700;278701;278702;278703	373829;373830;373831;373832;373833;373834;373835;373836;373837	373833			9	
SISNWEVMER	0	Unmodified	1249.5761	0.57612163	2182	Q02040	AKAP17A	A-kinase anchor protein 17A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	53.514	53.276	2	8.2266E-05	45675	160511_QHF_FH_JSI12i_3	86.898	69.386			1.255	1.3055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.255	1.3055	NaN	1	0	Median	40589000	20533000	20056000	0	0	0	0	0	0	0	0	0	40589000	20533000	20056000	46018	2182	43308	278704	373838	373838			1	
SISPEWK	1	Unmodified	845.42832	0.42831841	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.734	31.411	2	0.013927	26583	160511_QHF_FH_JSI12i_2	67.032	50.878			0.34172	0.38707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34172	0.38707	NaN	1	0	Median	52052000	35694000	16358000	0	0	0	0	0	0	0	0	0	52052000	35694000	16358000	46019	100	43309	278705	373839	373839			1	
SISQEQEK	1	Unmodified	947.45599	0.45598972	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	6.3469	4.6243	2	8.6477E-05	3635	160511_QHF_FH_JSI11i_1	131.41	60.496			1.083	0.90169	36.586	5	0	Median	1.083	0.90169	NaN	1	0	Median	0.67946	0.79491	NaN	1	0	Median	1.5241	1.5095	35.85	2	0	Median	0.81924	0.85101	NaN	1	0	Median	714810000	372600000	342220000	163950000	67851000	96101000	170430000	105100000	65323000	186140000	89592000	96547000	194290000	110050000	84245000	46020	3699	43310	278706;278707;278708;278709;278710	373840;373841;373842;373843;373844;373845;373846	373840			7	
SISQHYSK	1	Unmodified	948.46649	0.46649483	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.33	4.14		1	7						1	3	3	2	1	7.2418	6.2053	2;3	0.00041247	4719	160511_QHF_FH_JSI10i_3	109.11	59.52			0.95419	0.95894	21.887	9	2	Median	1.4089	1.154	31.97	3	1	Median	0.80781	0.95894	3.7252	3	1	Median	0.88644	0.8299	10.286	2	0	Median	0.96674	0.99117	NaN	1	0	Median	1158800000	564230000	594580000	210770000	89003000	121770000	297120000	166620000	130500000	538770000	245760000	293010000	112140000	62842000	49300000	46021	3563	43311	278711;278712;278713;278714;278715;278716;278717;278718;278719	373847;373848;373849;373850;373851;373852;373853;373854;373855;373856;373857	373851			11	
SISQQSGAR	0	Unmodified	932.46756	0.46755746	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.72		4	5			1	3	2		2	6	3	4	5.7561	0.94651	2	2.4076E-15	3101	160511_QHF_FH_JSI12i_3	146.81	128.08			0.91498	1.0038	6.8391	11	2	Median	1.1956	1.0031	6.6921	2	0	Median	0.81602	0.95306	4.8416	4	1	Median	1.024	1.0274	12.18	3	1	Median	0.92228	1.0185	2.0599	2	0	Median	3072500000	1455800000	1616700000	622010000	236520000	385490000	532460000	279660000	252790000	1086700000	520910000	565780000	831320000	418710000	412610000	46022	3966	43312	278720;278721;278722;278723;278724;278725;278726;278727;278728;278729;278730;278731;278732;278733;278734	373858;373859;373860;373861;373862;373863;373864;373865;373866;373867;373868;373869;373870;373871;373872;373873;373874;373875;373876;373877;373878	373877			21	
SISQSISGQK	1	Unmodified	1033.5404	0.54038805	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	17.674	15.677	2	0.0042061	10284	160513_QHF_FH_JSI11Kac_4	64.711	31.871			1.0452	1.1637	30.844	5	3	Median	1.5488	1.3432	NaN	1	1	Median	1.0452	1.214	NaN	1	0	Median	1.0056	1.0074	20.397	2	1	Median	0.58476	0.62932	NaN	1	1	Median	157880000	85409000	72471000	27163000	12413000	14751000	69710000	38110000	31601000	35157000	17535000	17622000	25849000	17351000	8497700	46023	3813	43313	278735;278736;278737;278738;278739;278740	373879;373880;373881;373882;373883;373884	373882			5	
SISSPSVSSETMDKPVDLSTR	1	Unmodified	2222.0736	0.073641813	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		54.133	53.615	3	2.7386E-05	46371	160511_QHF_FH_JSI11i_2	57.496	35.631			0.87234	0.88785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87234	0.88785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27630000	17612000	10017000	0	0	0	0	0	0	27630000	17612000	10017000	0	0	0	46024	1685	43314	278741	373885	373885			1	
SISSPSVSSETMDKPVDLSTRK	2	Unmodified	2350.1686	0.16860483	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			48.461	47.001	3;4	3.7437E-06	39187	160511_QHF_FH_JSI10i_3	74.364	61.176			0.4494	1.0555	72.18	4	2	Linear	0.40131	0.33141	86.182	3	2	Plateau	0.97847	1.1153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	260080000	156300000	103780000	224390000	140510000	83888000	35681000	15792000	19889000	0	0	0	0	0	0	46025	1685	43315	278742;278743;278744;278745	373886;373887;373888;373889;373890	373886			5	
SISTLLLLLLK	1	Unmodified	1212.8057	0.80571086	5407	Q9ULQ0	STRIP2	Striatin-interacting protein 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.961	90.806	2	5.5428E-24	52450	160513_QHF_FH_JSI9Kac_6	183.47	157.74			0.39323	0.3401	NaN	1	1	Median	0.39323	0.3401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38087000	29161000	8925900	38087000	29161000	8925900	0	0	0	0	0	0	0	0	0	46026	5407	43316	278746	373891	373891			1	
SISTSLPVLDLIDAIAPNAVR	0	Unmodified	2164.2103	0.21033371	2551	Q14651	PLS1	Plastin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	103.29	103.29	2;3	5.3052E-56	92327	160511_QHF_FH_JSI11i_3	180.97	144.12			0.92412	0.95699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92412	0.95699	NaN	1	1	Median	22662000	12918000	9743700	0	0	0	0	0	0	0	0	0	22662000	12918000	9743700	46027	2551	43317	278747;278748;278749	373892;373893;373894	373892			3	
SISVIDSPGILSGEK	1	Unmodified	1500.8035	0.80353861	4664	Q9H223	EHD4	EH domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.046	71.094	2	9.1862E-06	61411	160511_QHF_FH_JSI12i_2	126.1	94.258			0.93113	1.0088	33.383	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2063	1.2774	NaN	1	1	Median	0.71875	0.79669	NaN	1	0	Median	66261000	35392000	30869000	0	0	0	0	0	0	38097000	19046000	19051000	28164000	16346000	11818000	46028	4664	43318	278750;278751	373895;373896;373897;373898	373896			4	
SISVNQWGSQLGLSVLSK	1	Unmodified	1902.0211	0.021076378	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	98.097	97.952	2;3	4.0166E-16	87078	160511_QHF_FH_JSI11i_3	158.81	136.28			0.8318	0.82791	11.758	4	1	Median	0.92053	0.77823	NaN	1	0	Median	0.75162	0.88076	NaN	1	0	Median	1.0395	0.98163	NaN	1	0	Median	0.70111	0.76259	NaN	1	1	Median	54651000	29894000	24757000	11204000	7385300	3818600	17749000	9599600	8149900	17228000	6780300	10448000	8469200	6128400	2340800	46029	3290	43319	278752;278753;278754;278755;278756	373899;373900;373901;373902;373903;373904;373905	373900			7	
SITAAKYR	1	Acetyl (K)	950.51853	0.5185304	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	2	2	3	30.919	21.86	2	5.8553E-07	12009	160513_QHF_FH_JSI10Kac_5	143.11	86.56			0.8807	0.9655	100.7	9	1	Median	1.2911	1.1105	3.8451	2	0	Median	0.91228	1.0747	2.6288	2	0	Median	0.76088	0.74901	6.3984	2	0	Median	0.8807	0.9655	170.31	3	1	Plateau	148240000	82698000	65547000	22073000	10312000	11761000	34706000	19390000	15316000	62005000	34886000	27119000	29460000	18109000	11351000	46030	3723	43320	278757;278758;278759;278760;278761;278762;278763;278764;278765	373906;373907;373908;373909;373910;373911;373912;373913;373914;373915	373911	2920		10	
SITADPLDYR	0	Unmodified	1149.5666	0.5666028	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								2	3	4	1	48.843	48.206	2;3	1.3288E-05	47600	160511_QHF_FH_JSI11i_1	103.19	85.807			0.98768	1.017	22.249	7	4	Median	0.85191	0.69202	NaN	1	1	Median	0.75149	0.90601	15.142	2	1	Median	1.1647	1.1605	11.949	3	1	Median	0.98768	1.017	NaN	1	1	Median	406530000	204950000	201590000	55406000	30774000	24632000	104970000	65705000	39265000	174030000	79604000	94423000	72129000	28864000	43266000	46031	1790	43321	278766;278767;278768;278769;278770;278771;278772;278773;278774;278775	373916;373917;373918;373919;373920;373921;373922;373923;373924;373925	373917			10	
SITCWTLSR	0	Unmodified	1122.5492	0.5491786	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.334	52.768	2	0.0039802	44097	160511_QHF_FH_JSI10i_3	57.96	29.233			0.9703	0.93724	20.28	2	1	Median	1.3009	1.0818	NaN	1	1	Median	0.72371	0.81203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35762000	18139000	17623000	12973000	5781200	7191700	22789000	12358000	10431000	0	0	0	0	0	0	46032	3914	43322	278776;278777	373926;373927;373928	373927			3	
SITFLCGDAGPLAVAAVLYHK	1	Unmodified	2202.1507	0.15071034	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		95.104	87.544	3	0.0013765	51065	160513_QHF_FH_JSI10Kac_6	69.133	55.812			2.4627	2.624	168.91	2	1	Median	NaN	NaN	NaN	0	0	Median	7.2488	8.6631	NaN	1	1	Median	0.83667	0.79477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	657270000	61548000	595720000	0	0	0	608590000	37571000	571020000	48677000	23977000	24701000	0	0	0	46033	380	43323	278778;278779	373929;373930	373930			1	
SITGEEMSDIYVK	1	Unmodified	1470.6912	0.69121097	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	57.803	57.012	2	1.5062E-05	51407	160511_QHF_FH_JSI10i_1	174.1	136.38			1.3416	1.3047	13.898	5	2	Median	1.5778	1.3047	NaN	1	1	Median	0.94053	1.1138	NaN	1	1	Median	1.1615	1.139	NaN	1	0	Median	1.4132	1.4776	5.6673	2	0	Median	429810000	211310000	218510000	89045000	32686000	56359000	111110000	64313000	46801000	95257000	52590000	42667000	134400000	61719000	72678000	46034	5161	43324	278780;278781;278782;278783;278784	373931;373932;373933;373934;373935	373934			5	
SITHDIEEK	1	Unmodified	1070.5244	0.52440364	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.16		9	3					7		4	3	7	5	19.377	15.463	2;3	1.5477E-05	12424	160511_QHF_FH_JSI12i_3	122.28	72.154			0.95021	1.081	63.771	18	15	Median	1.8812	1.5991	72.415	4	3	Median	0.99542	1.1793	76.958	3	2	Median	0.47532	0.47527	69.195	6	6	Median	0.90705	0.99087	42.676	5	4	Median	782950000	411610000	371340000	166430000	76925000	89507000	124390000	62276000	62116000	378660000	225960000	152710000	113460000	46449000	67009000	46035	5298	43325	278785;278786;278787;278788;278789;278790;278791;278792;278793;278794;278795;278796;278797;278798;278799;278800;278801;278802;278803	373936;373937;373938;373939;373940;373941;373942;373943;373944;373945;373946;373947;373948;373949;373950;373951;373952;373953;373954;373955;373956;373957	373957			21	
SITHEGR	0	Unmodified	798.39842	0.39841526	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		1.3304	1.3304	2	0.055159	628	160511_QHF_FH_JSI11i_3	41.892	22.33			0.98685	0.90371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98685	0.90371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28080000	12964000	15116000	0	0	0	0	0	0	28080000	12964000	15116000	0	0	0	46036	4348	43326	278804	373958	373958			1	
SITHSTVGSK	1	Unmodified	1015.5298	0.52982336	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.2592	6.3569	2	0.0448	3909	160511_QHF_FH_JSI12i_3	51.436	34.66			0.86275	0.90599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86275	0.90599	NaN	1	0	Median	74632000	39620000	35012000	0	0	0	0	0	0	0	0	0	74632000	39620000	35012000	46037	4805	43327	278805	373959	373959			0	
SITILSTPEGTSAACK	1	Unmodified	1634.8185	0.81853675	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			54.366	53.967	2	0.032113	48746	160511_QHF_FH_JSI10i_1	47.062	24.529			0.93017	1.0611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93017	1.0611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35418000	18766000	16653000	0	0	0	35418000	18766000	16653000	0	0	0	0	0	0	46038	132	43328	278806	373960	373960			1	
SITQIKYNR	1	Acetyl (K)	1163.6299	0.62987176	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		45.286	35.273	2	1.2887E-10	19931	160513_QHF_FH_JSI11Kac_5	147.51	76.589			0.52449	0.56385	102.94	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98983	1.1676	NaN	1	0	Median	0.27791	0.2723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17989000	11038000	6950900	0	0	0	1764800	851290	913510	16224000	10187000	6037400	0	0	0	46039	2391	43329	278807;278808;278809	373961;373962	373962	2464		2	
SITSLSVADTVSSSTTSHTTAK	1	Unmodified	2180.0808	0.080835681	3645	Q8NEZ2	VPS37A	Vacuolar protein sorting-associated protein 37A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	51.013	50.856	3	6.8341E-16	45005	160511_QHF_FH_JSI11i_3	135.21	124.35			1.0251	0.96688	29.356	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0251	0.96688	NaN	1	0	Median	1.0581	1.086	40.416	2	2	Median	129760000	59829000	69934000	0	0	0	0	0	0	53995000	25806000	28189000	75768000	34023000	41745000	46040	3645	43330	278810;278811;278812	373963;373964;373965;373966;373967	373964			5	
SITTDDWK	1	Unmodified	964.45018	0.45017606	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.421	31.099	2	0.0029382	26269	160511_QHF_FH_JSI12i_2	83.265	47.385			1.1216	1.288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1216	1.288	NaN	1	1	Median	47652000	24522000	23130000	0	0	0	0	0	0	0	0	0	47652000	24522000	23130000	46041	943	43331	278813	373968	373968			1	
SITVEQHIGNIFMFSK	1	Unmodified	1849.9397	0.93965493	5557	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.865	84.693	3	0.048059	73484	160511_QHF_FH_JSI12i_3	27.43	20.539			0.37835	0.41168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37835	0.41168	NaN	1	1	Median	10785000	8928000	1856700	0	0	0	0	0	0	0	0	0	10785000	8928000	1856700	46042	5557	43332	278814	373969	373969			1	
SITVFFK	1	Unmodified	840.47454	0.47454032	1812	P53985	SLC16A1	Monocarboxylate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.86	6.27		2	4				2	2	4	3	4	4	3	69.383	63.503	2	0.0014072	34810	160513_QHF_FH_JSI10Kac_6	108.24	63.627			0.83863	0.91095	22.706	14	6	Median	1.3485	1.1275	24.155	3	2	Plateau	0.83844	0.99417	12.902	4	1	Median	0.98908	0.97823	29.516	4	2	Median	0.63942	0.66048	18.997	3	1	Plateau	1587600000	747860000	839760000	269360000	115880000	153480000	442590000	219480000	223120000	446060000	181050000	265000000	429610000	231460000	198150000	46043	1812	43333	278815;278816;278817;278818;278819;278820;278821;278822;278823;278824;278825;278826;278827;278828	373970;373971;373972;373973;373974;373975;373976;373977;373978;373979;373980;373981	373981			12	
SITVLVEGENTR	0	Unmodified	1316.6936	0.69359423	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.23		5	2					1		1	3	2	2	49.364	48.632	2	1.1874E-07	41974	160511_QHF_FH_JSI11i_2	166.66	140.22			0.65006	0.68058	23.212	7	4	Median	0.79745	0.68058	NaN	1	1	Median	0.51562	0.63063	18.518	2	2	Median	0.60837	0.58452	11.685	2	1	Median	0.82422	0.89505	26.178	2	0	Median	770290000	434490000	335800000	115390000	66068000	49319000	247080000	161960000	85125000	201370000	101850000	99527000	206450000	104620000	101830000	46044	1411	43334	278829;278830;278831;278832;278833;278834;278835;278836	373982;373983;373984;373985;373986;373987;373988;373989;373990;373991	373986			10	
SITVTQDEGIRPSTTMEGLAK	1	Unmodified	2233.126	0.12601173	923	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				60.554	59.582	3	1.8372E-05	52365	160511_QHF_FH_JSI9i_2	80.238	64.472			0.9541	0.80815	NaN	1	1	Median	0.9541	0.80815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21956000	8507600	13448000	21956000	8507600	13448000	0	0	0	0	0	0	0	0	0	46045	923	43335	278837	373992	373992			1	
SITYSLENK	1	Unmodified	1053.5342	0.53424004	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.5	1	5					1	1		2	1	3	2	36.176	34.039	2	1.5566E-05	29829	160511_QHF_FH_JSI10i_2	122.19	39.516			0.8618	0.98323	59.185	7	5	Median	0.83861	0.71701	NaN	1	0	Median	1.1291	1.3918	NaN	1	1	Median	0.72247	0.70401	39.202	3	2	Median	1.6799	1.8106	86.346	2	2	Median	440900000	188170000	252730000	80575000	39213000	41362000	71652000	26709000	44943000	141370000	64764000	76607000	147300000	57480000	89821000	46046	2997	43336	278838;278839;278840;278841;278842;278843;278844;278845	373993;373994;373995;373996;373997;373998;373999;374000;374001	374001			9	
SIVAFLK	1	Unmodified	776.47963	0.47962569	2542	Q14554	PDIA5	Protein disulfide-isomerase A5	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	65.043	62.502	2	0.0041464	53749	160511_QHF_FH_JSI12i_3	99.919	45.394			1.0596	0.88359	18.634	5	1	Median	1.0596	0.88359	NaN	1	0	Median	0.70626	0.81649	NaN	1	0	Median	0.97088	0.90783	31.157	2	1	Median	1.0863	1.08	NaN	1	0	Median	373270000	190780000	182490000	100760000	47493000	53266000	65837000	38061000	27775000	81267000	39267000	42000000	125410000	65954000	59453000	46047	2542	43337	278846;278847;278848;278849;278850	374002;374003;374004	374004			3	
SIVANSNK	1	Unmodified	831.44503	0.4450311	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	7.6998	7.2012	2	0.005887	4981	160511_QHF_FH_JSI12i_2	64.265	16.091			0.60963	0.67719	28.582	3	1	Plateau	1.4166	1.1977	NaN	1	1	Median	0.74625	0.90553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60963	0.67626	NaN	1	0	Median	71142000	32241000	38901000	22089000	6444300	15645000	20932000	11327000	9605700	0	0	0	28120000	14470000	13651000	46048	2302	43338	278851;278852;278853	374005;374006	374005			2	
SIVDNWPENHVK	1	Unmodified	1436.7048	0.70482762	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	40.79	40.58	2	5.1766E-11	34573	160511_QHF_FH_JSI12i_3	150.1	100.06			0.80408	0.82254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80408	0.82254	NaN	1	0	Median	46476000	22754000	23722000	0	0	0	0	0	0	0	0	0	46476000	22754000	23722000	46049	1225	43339	278854;278855	374007;374008	374008			2	
SIVDNWPENHVKAVVVTDGER	1	Acetyl (K)	2405.1975	0.19753719	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	77.368	68.247	3	2.9719E-29	35889	160513_QHF_FH_JSI12Kac_6	159.74	132.04			1.2583	1.3344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2583	1.3344	NaN	1	0	Median	64608000	12045000	52563000	19907000	0	19907000	0	0	0	13850000	0	13850000	30851000	12045000	18806000	46050	1225	43340	278856;278857;278858	374009;374010;374011	374011	1105		3	
SIVDYKPNLDLLEQQHQLIQEALIFDNK	2	Unmodified	3323.7402	0.74015708	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									16	4	4	3	5	94.154	85.778	3;4;5	0	46085	160513_QHF_FH_JSI12Kac_6	361.67	327.83			0.71782	0.63938	45.437	15	7	Median	0.53802	0.46993	28.679	4	2	Median	0.52619	0.62777	4.7232	4	2	Median	1.5296	1.441	5.3877	3	1	Median	0.95787	0.99172	12.202	4	2	Median	31591000000	15607000000	15984000000	6771300000	4505300000	2266000000	9161000000	5767200000	3393800000	5469200000	1522300000	3946900000	10189000000	3811700000	6377400000	46051	361	43341	278859;278860;278861;278862;278863;278864;278865;278866;278867;278868;278869;278870;278871;278872;278873;278874	374012;374013;374014;374015;374016;374017;374018;374019;374020;374021;374022;374023;374024;374025;374026;374027;374028;374029;374030;374031;374032;374033;374034	374022			23	
SIVEEEEDDDYVELK	1	Unmodified	1810.7996	0.79963502	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.988	59.497	2	2.1375E-10	54124	160511_QHF_FH_JSI12i_1	153.38	145.51			0.87758	0.90812	7.9454	3	0	Median	NaN	NaN	NaN	0	0	Median	0.70297	0.79947	NaN	1	0	Median	0.94277	0.90812	NaN	1	0	Median	0.87758	0.92509	NaN	1	0	Median	78277000	43398000	34879000	0	0	0	25210000	15563000	9647200	29435000	13151000	16284000	23632000	14684000	8948200	46052	1718	43342	278875;278876;278877	374035;374036;374037;374038	374036			3	
SIVEEIEDLVAR	0	Unmodified	1371.7246	0.72456001	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	101.87	101.82	2	1.3606E-38	90343	160511_QHF_FH_JSI10i_2	180.07	127.35			1.1228	1.0063	24.426	5	0	Median	1.1757	1.0063	NaN	1	0	Median	0.57235	0.68863	NaN	1	0	Median	1.2548	1.2315	10.189	2	0	Median	0.9263	0.95294	NaN	1	0	Median	977820000	491200000	486620000	119060000	64595000	54464000	119610000	55932000	63677000	430790000	203340000	227450000	308360000	167330000	141030000	46053	817	43343	278878;278879;278880;278881;278882;278883	374039;374040;374041;374042;374043;374044;374045	374043			7	
SIVEHVASK	1	Unmodified	968.5291	0.52909508	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.7	6.13			1						2	1	2			16.64	12.562	2;3	0.0013466	10338	160511_QHF_FH_JSI10i_3	55.401	41.631			1.121	1.1321	6.4091	2	0	Median	1.2272	1.0819	NaN	1	0	Median	1.0239	1.1846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182510000	64432000	118080000	1725400	916040	809340	180780000	63516000	117270000	0	0	0	0	0	0	46054	2083	43344	278884;278885;278886	374046;374047;374048	374046			3	
SIVEKIQAK	2	Acetyl (K)	1056.6179	0.61791009	654	O95197	RTN3	Reticulon-3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		54.108	43.35	2	0.000702	23975	160513_QHF_FH_JSI11Kac_5	95.502	39.244			0.27385	0.27014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27385	0.27014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3717800	2965000	752810	0	0	0	0	0	0	3717800	2965000	752810	0	0	0	46055	654	43345	278887	374049	374049	324		1	
SIVGEIVR	0	Unmodified	871.51272	0.51271674	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								3	1	2	46.465	45.632	2	0.0033453	39991	160511_QHF_FH_JSI11i_3	73.248	30.125			0.93908	0.95489	23.793	5	1	Median	NaN	NaN	NaN	0	0	Median	0.83889	0.99402	16.482	2	1	Median	1.1028	1.0457	NaN	1	0	Median	0.73141	0.76208	31.897	2	0	Median	581860000	301010000	280850000	0	0	0	153460000	84591000	68874000	209310000	92203000	117100000	219090000	124220000	94870000	46056	2605	43346	278888;278889;278890;278891;278892;278893	374050;374051;374052;374053;374054	374050			5	
SIVGMTK	1	Unmodified	734.39966	0.39966081	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	1	2	22.666	22.002	2	0.033279	18001	160511_QHF_FH_JSI12i_3	50.703	15.598			0.88751	0.92609	92.201	5	1	Median	NaN	NaN	NaN	0	0	Median	0.75098	0.90084	27.742	2	0	Median	3.9118	3.7114	NaN	1	1	Median	0.4921	0.51261	83.646	2	0	Median	524740000	258340000	266400000	0	0	0	143970000	79824000	64149000	108650000	27714000	80932000	272120000	150800000	121320000	46057	444	43347	278894;278895;278896;278897;278898	374055;374056;374057;374058;374059	374059			5	
SIVGMTMYNQATQEIAK	1	Unmodified	1883.9121	0.91211956	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		75.47	74.388	2	6.0612E-24	65539	160511_QHF_FH_JSI9i_2	138.94	116.02			0.83793	0.75184	50.433	3	3	Median	1.3071	1.11	63.836	2	2	Median	0.64141	0.75184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42803000	28886000	13917000	18680000	7319700	11360000	9546700	6989700	2556900	14576000	14576000	0	0	0	0	46058	5507	43348	278899;278900;278901;278902;278903;278904	374060;374061;374062;374063;374064;374065;374066	374065			7	
SIVIRPLEPQPAPHLAR	0	Unmodified	1893.0949	0.094850444	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			56.684	55.133	4	0.052068	45158	160511_QHF_FH_JSI9i_3	20.368	12.776			1.3378	1.2943	28.954	2	0	Median	1.9529	1.5884	NaN	1	0	Median	0.91642	1.0547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50939000	23384000	27555000	26951000	8995700	17955000	23988000	14388000	9599900	0	0	0	0	0	0	46059	2609	43349	278905;278906	374067	374067			1	
SIVLNEYK	1	Unmodified	964.52295	0.52294707	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		3	1	2	1	41.738	37.63	2	0.0014229	32883	160511_QHF_FH_JSI9i_2	89.698	43.272			1.1674	1.075	24.929	6	1	Median	1.3159	1.114	15.65	2	1	Median	0.79273	0.99403	NaN	1	0	Median	1.1835	1.1671	1.0184	2	0	Median	0.55726	0.62861	NaN	1	0	Median	467270000	211790000	255480000	76062000	34933000	41130000	106810000	53321000	53494000	170590000	69282000	101310000	113800000	54253000	59542000	46060	3709	43350	278907;278908;278909;278910;278911;278912;278913	374068;374069;374070;374071;374072;374073;374074;374075;374076;374077;374078	374073			11	
SIVNYKPK	2	Unmodified	947.54402	0.54401687	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	18.513	17.94	2;3	0.00094453	14908	160511_QHF_FH_JSI11i_3	74.127	53.427			0.80091	0.79026	33.465	8	0	Median	0.71384	0.5717	16.935	2	0	Median	0.64184	0.75584	4.5067	2	0	Median	1.3836	1.3362	5.297	2	0	Median	0.82265	0.8199	3.4158	2	0	Median	3070100000	1656900000	1413200000	883990000	479950000	404040000	441190000	305280000	135910000	730200000	312140000	418060000	1014800000	559520000	455230000	46061	1021	43351	278914;278915;278916;278917;278918;278919;278920;278921	374079;374080;374081;374082;374083;374084;374085;374086;374087;374088;374089;374090;374091;374092;374093	374079			15	
SIVNYKPKIDQLEGDHQLIQEALIFDNK	3	Acetyl (K)	3309.7245	0.72450701	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	1	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	93.845	85.584	3;4;5	6.3513E-06	47913	160513_QHF_FH_JSI9Kac_6	84.035	63.443			0.77221	0.66176	25.01	3	3	Median	0.91915	0.79058	25.154	2	2	Median	0.50456	0.58303	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	728090000	453650000	274440000	603760000	346330000	257430000	54042000	37037000	17005000	0	0	0	70285000	70285000	0	46062	1021	43352	278922;278923;278924;278925	374094;374095;374096;374097	374095	836;837		4	
SIVPISR	0	Unmodified	770.46504	0.46503826	559	O75695	RP2	Protein XRP2	yes	yes	0	0	0	0	By MS/MS	By matching			2.33	0.471		2	1							2	1			32.898	31.763	2	0.035999	25780	160511_QHF_FH_JSI9i_3	49.358	24.36			0.74967	0.78937	15.657	3	0	Plateau	1.1035	0.91624	18.498	2	0	Median	0.64865	0.78937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98632000	57624000	41008000	62597000	32973000	29624000	36035000	24651000	11384000	0	0	0	0	0	0	46063	559	43353	278926;278927;278928	374098;374099	374098			2	
SIVPTMHYQDSLPR	0	Unmodified	1642.8137	0.81372614	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5								1	4	3	56.935	56.472	2;3	1.767E-05	50037	160511_QHF_FH_JSI11i_3	119.45	80.183			1.0933	1.0499	10.092	7	1	Median	NaN	NaN	NaN	0	0	Median	0.81797	1.0025	NaN	1	0	Median	1.1977	1.1467	7.2034	3	1	Median	1.0933	1.0499	13.186	3	0	Median	804020000	397260000	406760000	0	0	0	130610000	74178000	56434000	322870000	138560000	184310000	350540000	184520000	166020000	46064	1240	43354	278929;278930;278931;278932;278933;278934;278935;278936	374100;374101;374102;374103;374104;374105;374106;374107;374108	374102			8	
SIVSELAGLLSAMEYVQK	1	Unmodified	1937.018	0.017964835	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	102.45	99.592	2;3	9.1518E-17	93002	160511_QHF_FH_JSI11i_3	159.18	141.69			1.0599	1.0846	8.8375	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87074	1.0189	NaN	1	0	Median	1.2901	1.1546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117860000	59227000	58634000	0	0	0	69943000	37749000	32193000	47919000	21478000	26441000	0	0	0	46065	1500	43355	278937;278938;278939	374109;374110;374111	374109			3	
SIVTDLVSQMDPHGR	0	Unmodified	1653.8145	0.81445442	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		82.853	82.011	3	0.0029667	68861	160511_QHF_FH_JSI10i_3	44.252	38.348			0.94696	1.0652	27.22	3	1	Median	1.2985	1.071	NaN	1	0	Median	0.94696	1.0652	NaN	1	0	Median	0.73175	0.66661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75421000	39426000	35995000	17527000	7472700	10054000	22933000	13386000	9546900	34961000	18567000	16394000	0	0	0	46066	409	43356	278940;278941;278942	374112;374113;374114;374115	374114			4	
SIVTLSMAK	1	Oxidation (M)	964.52632	0.52631789	5211	Q9P2D3	HEATR5B	HEAT repeat-containing protein 5B	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	15.3	0.471								2	1		1	1	1	99.162	89.402	2	0.033649	49212	160513_QHF_FH_JSI12Kac_6	40.778	12.291			1.5901	1.2376	19.824	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0713	1.2376	NaN	1	0	Median	1.2621	1.2081	NaN	1	0	Median	1.5901	1.7226	NaN	1	0	Median	16074000	6173800	9900600	0	0	0	1406100	554830	851260	2779700	1258500	1521200	11889000	4360400	7528200	46067	5211	43357	278943;278944;278945	374116	374116			1	
SIVVANYEESIK	1	Unmodified	1350.7031	0.70309628	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.54	4	4	4			1	3	5	5	6	7	7	6	59.741	53.891	2	1.2462E-41	46450	160511_QHF_FH_JSI11i_2	202.56	165.87			0.96425	0.97372	32.086	26	6	Median	1.076	0.8948	50.356	6	2	Median	0.85446	1.0246	18.537	7	0	Median	0.97414	0.95607	13.493	7	3	Median	0.92668	0.98583	29.219	6	1	Median	6442700000	3168400000	3274200000	1053100000	522480000	530670000	1873000000	937430000	935580000	2154500000	1003200000	1151300000	1362000000	705360000	656630000	46068	1395	43358	278946;278947;278948;278949;278950;278951;278952;278953;278954;278955;278956;278957;278958;278959;278960;278961;278962;278963;278964;278965;278966;278967;278968;278969;278970;278971	374117;374118;374119;374120;374121;374122;374123;374124;374125;374126;374127;374128;374129;374130;374131;374132;374133;374134;374135;374136;374137;374138;374139;374140;374141;374142;374143;374144;374145;374146;374147;374148;374149;374150;374151;374152;374153;374154;374155;374156;374157;374158;374159	374141			43	
SIVWDEK	1	Unmodified	875.43888	0.43888309	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	35.812	35.058	2	0.047303	29742	160511_QHF_FH_JSI11i_2	43.769	7.3741			0.77887	0.83405	29.122	4	0	Median	1.0823	0.90637	NaN	1	0	Median	0.63961	0.7675	NaN	1	0	Median	0.94845	0.96265	NaN	1	0	Median	0.49319	0.50475	NaN	1	0	Median	347250000	192200000	155050000	73743000	36912000	36831000	74508000	42697000	31811000	141070000	78306000	62767000	57929000	34286000	23642000	46069	235	43359	278972;278973;278974;278975	374160	374160			1	
SIYDDISSPGLGSTPLTSR	0	Unmodified	1964.9691	0.96910039	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	76.414	75.709	2	2.0683E-24	68700	160511_QHF_FH_JSI10i_1	176.89	159.68			0.91958	0.94101	13.012	6	2	Median	0.96671	0.7866	NaN	1	1	Median	0.90239	1.0618	12.919	2	0	Median	1.0036	0.99922	NaN	1	1	Median	0.8673	0.90436	1.4558	2	0	Median	175270000	91164000	84110000	13680000	7433900	6246200	65405000	33526000	31879000	43120000	21882000	21238000	53070000	28322000	24748000	46070	3658	43360	278976;278977;278978;278979;278980;278981	374161;374162;374163;374164;374165;374166;374167;374168;374169;374170	374164			10	
SIYFSSPK	1	Unmodified	927.47018	0.47018322	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.33	4.78		4	1					1		1	1	1	3	37.686	36.954	2	0.003623	31569	160511_QHF_FH_JSI12i_2	71.501	38.143			0.86975	0.98842	24.635	4	1	Median	NaN	NaN	NaN	0	0	Median	0.704	0.87046	NaN	1	0	Median	0.76347	0.75845	NaN	1	0	Median	1.1468	1.2129	10.976	2	1	Median	239110000	130010000	109100000	0	0	0	66780000	39926000	26853000	87288000	47972000	39316000	85041000	42113000	42929000	46071	1320	43361	278982;278983;278984;278985;278986;278987	374171;374172;374173;374174	374172			4	
SIYGEKFEDENFILK	2	Unmodified	1830.904	0.90398093	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							3	3	2	4	72.472	71.784	2;3	1.6407E-07	63313	160511_QHF_FH_JSI9i_2	177.54	136.95			0.7495	0.72961	58.004	11	6	Median	0.56603	0.47095	102.77	3	2	Median	0.39474	0.48074	26.344	2	2	Median	0.63572	0.63998	18.537	2	0	Median	1.0073	1.0621	15.551	4	2	Median	896430000	555190000	341240000	157790000	112610000	45182000	227670000	169570000	58105000	140080000	84262000	55816000	370890000	188750000	182140000	46072	2040	43362	278988;278989;278990;278991;278992;278993;278994;278995;278996;278997;278998;278999	374175;374176;374177;374178;374179;374180;374181;374182;374183;374184;374185;374186;374187;374188;374189;374190;374191;374192	374182			18	
SIYGEKFEDENFILK	2	Acetyl (K)	1872.9145	0.91454562	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		85.677	75.765	2	2.8397E-139	41977	160513_QHF_FH_JSI11Kac_6	285.54	246.27			0.39915	0.38056	22.935	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39915	0.38056	22.935	2	0	Median	NaN	NaN	NaN	0	0	Median	65767000	44774000	20993000	0	0	0	0	0	0	65767000	44774000	20993000	0	0	0	46073	2040	43362	279000;279001	374193;374194;374195;374196	374193	2096;2098		4	
SIYGERFPDENFK	1	Unmodified	1600.7522	0.75217174	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.99	2	14	11						5	8	10	7	7	53.453	51.369	2;3	1.3271E-115	44072	160511_QHF_FH_JSI12i_3	270.56	245.7			0.98041	0.98573	18.121	27	15	Median	1.0917	0.90112	9.8929	6	5	Median	0.79895	0.94811	16.946	8	5	Median	1.1938	1.1606	15.855	7	2	Median	0.8928	0.94523	16.389	6	3	Median	36816000000	18887000000	17929000000	3088900000	1355800000	1733000000	6868100000	4048900000	2819200000	15714000000	7564600000	8149600000	11145000000	5917200000	5227400000	46074	1224	43363	279002;279003;279004;279005;279006;279007;279008;279009;279010;279011;279012;279013;279014;279015;279016;279017;279018;279019;279020;279021;279022;279023;279024;279025;279026;279027;279028;279029;279030;279031;279032;279033	374197;374198;374199;374200;374201;374202;374203;374204;374205;374206;374207;374208;374209;374210;374211;374212;374213;374214;374215;374216;374217;374218;374219;374220;374221;374222;374223;374224;374225;374226;374227;374228;374229;374230;374231;374232;374233;374234;374235;374236;374237;374238;374239;374240;374241;374242;374243;374244;374245;374246;374247;374248;374249;374250;374251;374252;374253;374254;374255;374256;374257	374249			61	
SIYGERFPDENFKLK	2	Acetyl (K)	1883.9418	0.94176342	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	74.178	65.455	3	0.00022979	35410	160513_QHF_FH_JSI11Kac_6	94.017	65.805			0.26515	0.24906	119.2	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6121	1.9236	NaN	1	0	Median	0.26515	0.24906	NaN	1	0	Median	0.22255	0.23927	NaN	1	0	Median	356080000	244660000	111420000	0	0	0	122160000	57837000	64324000	206130000	166840000	39281000	27790000	19975000	7814900	46075	1224	43364	279034;279035;279036	374258;374259;374260;374261;374262	374259	1099;1100		5	
SIYGSRFPDENFTLK	1	Unmodified	1772.8733	0.87334951	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			66.42	64.923	2	0.0023565	54313	160511_QHF_FH_JSI10i_3	77.64	51.981			0.87926	1.0037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87926	1.0037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23615000	11802000	11813000	0	0	0	23615000	11802000	11813000	0	0	0	0	0	0	46076	1348	43365	279037	374263;374264	374263			2	
SIYHYGNK	1	Unmodified	980.47158	0.4715802	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	12.143	11.762	2;3	0.00087372	9200	160511_QHF_FH_JSI11i_3	97.071	81.632			0.97248	1.0193	28.663	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72261	0.83231	NaN	1	0	Median	1.3088	1.2483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51101000	25567000	25534000	0	0	0	14512000	5880300	8631200	36590000	19686000	16903000	0	0	0	46077	5360	43366	279038;279039;279040	374265;374266	374265			2	
SIYNLNEDEELTHYGQSLADIEK	1	Unmodified	2680.2504	0.2504202	2081	P78316	NOP14	Nucleolar protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	86.041	85.391	3	7.3661E-09	75897	160511_QHF_FH_JSI10i_2	84.181	70.993			0.84344	0.91848	24	6	3	Median	0.79401	0.70317	NaN	1	1	Median	0.88052	1.0729	NaN	1	0	Median	0.80793	0.79958	NaN	1	0	Median	0.9847	1.0551	30.505	3	2	Median	171020000	89546000	81471000	15625000	11107000	4517400	18697000	8989600	9707200	42470000	24335000	18135000	94226000	45114000	49112000	46078	2081	43367	279041;279042;279043;279044;279045;279046	374267;374268;374269;374270;374271;374272;374273;374274;374275;374276	374272			10	
SIYSLILGQDNAADQSR	0	Unmodified	1849.917	0.91700524	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		2	2							3		1		83.781	83.164	2;3	3.0946E-05	74237	160511_QHF_FH_JSI11i_3	107.09	83.713			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46079	5179	43368	279047;279048;279049;279050	374277;374278;374279;374280	374277			4	
SIYTPLELQYIEMK	1	Unmodified	1726.8852	0.88515975	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	95.127	94.73	2	9.251E-05	83865	160511_QHF_FH_JSI10i_2	112.15	78.262			0.76119	0.86429	13.177	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73419	0.9234	NaN	1	0	Median	0.76119	0.71628	NaN	1	0	Median	0.79274	0.86429	NaN	1	1	Median	36131000	20021000	16110000	0	0	0	11398000	5722500	5675700	16476000	10807000	5669000	8256800	3491300	4765500	46080	1176	43369	279051;279052;279053	374281;374282;374283;374284	374284			4	
SIYVGNVDYGATAEELEAHFHGCGSVNR	0	Unmodified	3051.3781	0.37809711	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	84.002	83.906	4	1.7642E-10	74947	160511_QHF_FH_JSI11i_3	77.522	75.641			1.3571	1.2725	18.448	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6177	1.4498	NaN	1	0	Median	1.1385	1.1168	NaN	1	0	Median	81020000	33374000	47646000	0	0	0	0	0	0	48215000	19320000	28895000	32805000	14054000	18751000	46081	3315	43370	279054;279055	374285	374285			1	
SIYYITGESK	1	Unmodified	1159.5761	0.57610486	898;2870	P08238;Q58FF8	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.17	1	8	4			5	3	4	5	9	7	7	7	46.956	40.903	1;2	1.6952E-24	24016	160513_QHF_FH_JSI12Kac_4	179.51	118.6			0.95868	0.96245	18.859	27	3	Median	1.0684	0.96314	31.191	6	2	Median	0.71859	0.77543	13.332	7	1	Median	0.96219	0.96136	6.4447	7	0	Median	1.0385	0.84083	10.653	7	0	Linear	28863000000	14586000000	14277000000	8207800000	4349800000	3858000000	5825700000	3006600000	2819100000	7915100000	3909300000	4005800000	6914600000	3320200000	3594400000	46082	898;2870	43371	279056;279057;279058;279059;279060;279061;279062;279063;279064;279065;279066;279067;279068;279069;279070;279071;279072;279073;279074;279075;279076;279077;279078;279079;279080;279081;279082;279083;279084;279085	374286;374287;374288;374289;374290;374291;374292;374293;374294;374295;374296;374297;374298;374299;374300;374301;374302;374303;374304;374305;374306;374307;374308;374309;374310;374311;374312;374313;374314;374315;374316;374317;374318;374319;374320;374321;374322;374323;374324;374325;374326;374327;374328;374329;374330;374331;374332;374333;374334;374335;374336;374337;374338;374339;374340;374341;374342;374343;374344;374345	374325			59	
SKAELMEISEDK	2	Unmodified	1378.665	0.66499622	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.25	0.433		3	1							3		1		35.786	34.742	2	0.00013034	30338	160511_QHF_FH_JSI9i_2	93.623	64.665			2.7672	2.4472	NaN	1	1	Median	2.7672	2.4472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30718000	11476000	19242000	30718000	11476000	19242000	0	0	0	0	0	0	0	0	0	46083	840	43372	279086;279087;279088;279089	374346;374347;374348;374349	374349			4	
SKAHFFGK	2	Acetyl (K)	962.4974	0.49740102	3818	Q8WYB5	KAT6B	Histone acetyltransferase KAT6B	yes	yes	1	0	0	1		By matching	By matching	By MS/MS	16	0									3		1	1	1	36.165	27.145	3	0.010693	14412	160513_QHF_FH_JSI12Kac_6	46.462	35.994			0.79894	0.95451	12.079	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79894	0.95451	NaN	1	0	Median	1.0392	1.0003	NaN	1	0	Median	0.73703	0.79583	NaN	1	0	Median	19370000	9987300	9383000	0	0	0	7526900	4125000	3401900	5435800	2070600	3365200	6407600	3791600	2616000	46084	3818	43373	279090;279091;279092	374350	374350	2949		1	
SKAHPPELK	2	Acetyl (K);Acetyl (Protein N-term)	1089.5819	0.58185894	37	P62308;A8MWD9	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	yes	no	1	1	0	1		By MS/MS			13	0						1					1			39.193	30.336	2	0.012325	16730	160513_QHF_FH_JSI10Kac_3	46.158	20.421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46085	37	43374	279093	374351	374351	8		1	
SKDDQVTVIGAGVTLHEALAAAELLK	2	Unmodified	2648.4385	0.43849575	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.11		5	9						3	4	3	2	8	100.57	99.123	3;4	3.1506E-172	88135	160511_QHF_FH_JSI12i_3	296.35	288.99			0.78761	0.94056	30.36	16	4	Median	1.1575	0.96866	17.802	4	0	Median	0.76402	0.92317	3.6555	3	1	Median	1.2514	1.1654	1.4953	2	2	Median	0.76557	0.78649	42.996	7	1	Median	8198100000	4414800000	3783300000	517120000	246230000	270890000	748280000	439660000	308620000	1627500000	715830000	911690000	5305200000	3013100000	2292100000	46086	1322	43375	279094;279095;279096;279097;279098;279099;279100;279101;279102;279103;279104;279105;279106;279107;279108;279109;279110	374352;374353;374354;374355;374356;374357;374358;374359;374360;374361;374362;374363;374364;374365;374366;374367;374368	374361			15	
SKDDQVTVIGAGVTLHEALAAAELLKK	3	Unmodified	2776.5335	0.53345876	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	2			By MS/MS	By MS/MS	3	0			3									2	1	101.11	101.11	4;5	6.0058E-15	87724	160511_QHF_FH_JSI12i_3	97.771	95.576			1.2099	1.1273	10.885	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3007	1.2079	9.7726	2	0	Median	1.0166	1.0442	NaN	1	0	Median	266000000	133670000	132320000	0	0	0	0	0	0	153580000	72188000	81393000	112410000	61483000	50931000	46087	1322	43376	279111;279112;279113	374369;374370	374370			2	
SKDEYEK	2	Unmodified	897.40798	0.40797689	2378	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	4.5647	4.2501	2	0.026769	2041	160511_QHF_FH_JSI12i_2	101.43	55.713			0.93903	0.98272	84.931	4	0	Median	1.38	1.1641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47672	0.46873	124.32	2	0	Median	0.75723	0.85537	NaN	1	0	Median	584240000	294090000	290160000	216510000	86558000	129950000	0	0	0	108080000	64163000	43919000	259650000	143360000	116290000	46088	2378	43377	279114;279115;279116;279117	374371	374371			1	
SKDPSGLLISVIR	1	Unmodified	1383.8086	0.80856441	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	72.218	71.494	3	0.00044599	61925	160511_QHF_FH_JSI12i_3	62.042	51.432			0.87855	0.90265	2.9261	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77577	0.88417	NaN	1	0	Median	0.99495	0.92152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26483000	17659000	8823400	0	0	0	11684000	6831300	4852500	14799000	10828000	3970800	0	0	0	46089	3962	43378	279118;279119;279120;279121;279122	374372;374373;374374;374375;374376	374376			5	
SKEELAQEK	2	Unmodified	1060.5401	0.5400537	2622	Q15059	BRD3	Bromodomain-containing protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	6.2586	6.3563	2	0.0049239	3995	160511_QHF_FH_JSI12i_3	96.015	61.762			1.886	1.9117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.886	1.9117	NaN	1	1	Median	28684000	9069600	19614000	0	0	0	0	0	0	0	0	0	28684000	9069600	19614000	46090	2622	43379	279123	374377	374377			1	
SKFADLSEAANR	1	Acetyl (K)	1349.6575	0.65754307	913	P08670	VIM	Vimentin	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	59.287	48.625	2	0.020454	27264	160513_QHF_FH_JSI12Kac_4	57.836	11.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1282900	1282900	0	0	0	0	0	0	0	0	0	0	1282900	1282900	0	46091	913	43380	279124	374378	374378	665		1	
SKFDELSASNLPPNLK	2	Unmodified	1758.9152	0.91521432	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	60.781	60.598	3	0.00023336	52469	160511_QHF_FH_JSI12i_3	76.341	69.76			1.0849	1.0922	22.251	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8644	0.78333	NaN	1	0	Median	1.1253	1.1425	6.3716	2	2	Median	201160000	92542000	108620000	0	0	0	0	0	0	52072000	24472000	27600000	149090000	68070000	81017000	46092	3549	43381	279125;279126;279127	374379;374380;374381	374381			2	
SKFDEMAK	2	Unmodified	954.44807	0.44806757	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	1	3	14.299	13.995	2;3	0.00039281	10816	160511_QHF_FH_JSI12i_3	87.308	29.348			2.0045	2.2124	64.999	6	6	Median	3.8611	3.2985	NaN	1	1	Median	1.3094	1.614	77.399	2	2	Median	6.5101	6.1663	NaN	1	1	Median	1.7031	1.7327	1.7691	2	2	Median	1043500000	412280000	631230000	59885000	20021000	39863000	179990000	86036000	93951000	164720000	24341000	140380000	638910000	281880000	357030000	46093	278	43382	279128;279129;279130;279131;279132;279133;279134	374382;374383;374384;374385;374386;374387;374388	374388			7	
SKFDEMAK	2	Acetyl (K)	996.45863	0.45863226	278	O15347	HMGB3	High mobility group protein B3	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	41.913	31.983	2	0.011473	18410	160513_QHF_FH_JSI10Kac_4	72.607	12.588			0.29266	0.33569	180.77	2	1	Median	NaN	NaN	NaN	0	0	Median	0.99802	1.2053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.08582	0.093495	NaN	1	1	Median	11949000	6872300	5076600	0	0	0	7970300	3404900	4565400	0	0	0	3978600	3467300	511240	46094	278	43382	279135;279136	374389;374390	374389	149		2	
SKFDNLYGCR	1	Unmodified	1258.5765	0.57645598	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			29.187	27.825	2;3	0.00057267	22594	160511_QHF_FH_JSI9i_3	86.624	70.962			1.2628	1.0241	7.1708	3	0	Median	1.2694	1.0312	0.97698	2	0	Median	0.80774	0.91129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107870000	53899000	53972000	76440000	36154000	40286000	31431000	17745000	13685000	0	0	0	0	0	0	46095	1234	43383	279137;279138;279139	374391;374392;374393	374392			3	
SKFEDMAK	2	Unmodified	954.44807	0.44806757	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	3	2	15.337	14.919	2;3	0.00048598	12328	160511_QHF_FH_JSI9i_2	85.676	4.1279			0.97028	0.99396	69.879	10	2	Median	3.3297	2.8339	160.06	2	0	Median	0.93748	1.0471	5.2733	3	1	Plateau	1.0441	0.99147	2.9894	3	1	Plateau	0.86894	0.87623	1.1462	2	0	Median	4580200000	2485200000	2095000000	315670000	115520000	200150000	520200000	278960000	241240000	1722800000	855980000	866830000	2021600000	1234700000	786830000	46096	1280	43384	279140;279141;279142;279143;279144;279145;279146;279147;279148;279149	374394;374395;374396;374397;374398;374399;374400;374401;374402;374403;374404;374405;374406	374400			13	
SKFEDMAK	2	Oxidation (M)	970.44298	0.44298219	1280	P26583	HMGB2	High mobility group protein B2	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	14.79	14.821	3	0.024867	11573	160511_QHF_FH_JSI12i_3	48.794	7.346			0.89359	0.8671	93.912	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46884	0.44635	NaN	1	1	Median	1.7032	1.6845	NaN	1	1	Median	382500000	176230000	206270000	0	0	0	0	0	0	166030000	85076000	80955000	216470000	91152000	125320000	46097	1280	43384	279150;279151	374407;374408	374408			2	
SKFVLVK	2	Acetyl (K)	861.53239	0.53238955	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.7	0.471							1	2			1	2		60.687	49.82	2	0.036757	25190	160513_QHF_FH_JSI10Kac_5	66.073	37.966			0.32665	0.32476	73.867	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97275	1.1528	NaN	1	0	Median	0.32182	0.32076	1.7517	2	0	Median	NaN	NaN	NaN	0	0	Median	26065000	17754000	8311200	0	0	0	5077700	2020500	3057200	20987000	15733000	5254000	0	0	0	46098	1332	43385	279152;279153;279154	374409	374409			1	
SKGESDDFHMDFDSAVAPR	1	Unmodified	2109.9062	0.90618255	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		54.12	54.12	3	0.014943	47931	160511_QHF_FH_JSI11i_3	36.923	32.021			1.8501	1.7036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8501	1.7036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20557000	5245600	15312000	0	0	0	0	0	0	20557000	5245600	15312000	0	0	0	46099	999	43386	279155	374410	374410			1	
SKGKNSDEEAPK	3	2 Acetyl (K)	1372.647	0.64703797	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	0.8				1	5	3	1			1	2	3	4	17.22	9.976	2;3	3.345E-08	1953	160513_QHF_FH_JSI9Kac_2	113.77	83.203			0.82948	0.92285	24.626	9	0	Median	NaN	NaN	NaN	0	0	Median	0.78507	0.93442	1.7616	2	0	Median	1.1366	1.1147	27.57	3	0	Median	0.80977	0.85949	31.245	4	0	Median	209200000	99266000	109930000	0	0	0	41630000	23215000	18415000	107690000	46992000	60693000	59880000	29058000	30822000	46100	5440	43387	279156;279157;279158;279159;279160;279161;279162;279163;279164;279165	374411;374412;374413;374414;374415;374416;374417;374418;374419;374420;374421;374422	374422	3419;3420;3423		12	
SKGKNSDEEAPKTAQK	4	3 Acetyl (K)	1842.8959	0.89593544	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	3	0	0	3		By MS/MS	By MS/MS	By MS/MS	11.8	0.687				4	6	2					4	3	5	27.73	20.219	2;3	2.6916E-06	9673	160513_QHF_FH_JSI10Kac_2	102.73	94.423			0.89876	1.0417	7.3899	9	0	Median	NaN	NaN	NaN	0	0	Median	0.8573	1.0028	4.8992	4	0	Median	1.1937	1.128	4.7967	2	0	Median	0.94835	1.0417	8.6848	3	0	Median	163570000	87711000	75857000	0	0	0	68531000	39942000	28589000	29194000	13355000	15838000	65844000	34414000	31430000	46101	5440	43388	279166;279167;279168;279169;279170;279171;279172;279173;279174;279175;279176;279177	374423;374424;374425;374426;374427;374428;374429;374430;374431;374432;374433;374434;374435;374436;374437;374438;374439;374440;374441;374442	374430	3419;3420;3421;3423		20	
SKGKNSDEEAPKTAQKK	5	4 Acetyl (K)	2013.0015	0.0014631481	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	11.7	0.471				1	2						1	1	1	33.628	25.044	3	0.0042754	11363	160513_QHF_FH_JSI11Kac_2	44.587	36.299			1.0615	1.0811	4.1334	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1284	1.1132	NaN	1	0	Median	0.99863	1.05	NaN	1	0	Median	17231000	8773000	8457900	0	0	0	1333300	1333300	0	6323000	2920600	3402300	9574700	4519100	5055600	46102	5440	43389	279178;279179;279180	374443;374444;374445;374446	374443	3419;3420;3421;3423		4	
SKGQESFK	2	Acetyl (K)	951.46616	0.46616048	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						2	2				1	1	2	17.853	10.454	2	7.254E-05	7451	160513_QHF_FH_JSI12Kac_3	129.38	71.823			0.89091	0.93383	10.9	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94977	1.1444	NaN	1	0	Median	0.91509	0.90351	NaN	1	0	Median	0.86099	0.93383	2.1622	2	0	Median	407870000	216320000	191550000	0	0	0	46116000	25377000	20739000	135600000	71038000	64561000	226150000	119910000	106250000	46103	857	43390	279181;279182;279183;279184	374447;374448;374449;374450;374451	374449	547;550		5	
SKGQESFKK	3	Acetyl (K)	1079.5611	0.56112349	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	13.497	4.1539	3	0.04166	5339	160513_QHF_FH_JSI11Kac_5	49.35	25.922			0.74877	0.86788	158.74	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0442	1.25	NaN	1	0	Median	15.561	15.413	NaN	1	1	Median	0.73871	0.81693	NaN	1	0	Median	19906000	9201900	10704000	0	0	0	7952300	3702300	4250000	2985000	154880	2830100	8968800	5344800	3624100	46104	857	43391	279185;279186;279187	374452;374453	374452	547;550		2	
SKHEEEAVQK	2	Unmodified	1183.5833	0.5833155	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	4.577	4.6079	2;3	9.8374E-07	2141	160511_QHF_FH_JSI12i_3	120.06	89.492			0.90343	0.86652	27.405	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76269	0.72056	26.087	2	0	Median	0.97183	1.0236	NaN	1	0	Median	460620000	248000000	212620000	0	0	0	0	0	0	413580000	217720000	195860000	47041000	30280000	16760000	46105	4678	43392	279188;279189;279190	374454;374455	374455			1	
SKIEDYFPEFAR	1	Unmodified	1500.7249	0.72489436	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	1	2		71.459	70.881	2;3	9.1063E-05	63002	160511_QHF_FH_JSI11i_3	122.7	111.17			1.4233	1.1871	15.355	4	2	Linear	1.3632	1.1338	NaN	1	0	Median	1.2391	1.4347	NaN	1	0	Median	1.1955	1.1128	15.632	2	2	Median	NaN	NaN	NaN	0	0	Median	326120000	156910000	169210000	68854000	31183000	37671000	52956000	24467000	28489000	204310000	101260000	103050000	0	0	0	46106	2048	43393	279191;279192;279193;279194	374456;374457;374458;374459;374460;374461;374462	374457			7	
SKIETEIK	2	Unmodified	946.53351	0.53351176	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		9	6					3		5	3	5	5	14.574	12.625	2;3	4.5844E-05	8179	160513_QHF_FH_JSI11Kac_5	113.71	75.979			1.1866	1.1594	51.002	18	8	Median	1.5137	1.254	22.416	5	0	Median	0.88808	1.0856	59.952	3	2	Median	1.0786	1.0751	44.507	5	2	Median	0.84007	0.92792	79.841	5	4	Median	6699800000	3313800000	3386000000	848720000	331780000	516940000	756190000	454540000	301660000	1951100000	998820000	952290000	3143800000	1528700000	1615100000	46107	4837	43394	279195;279196;279197;279198;279199;279200;279201;279202;279203;279204;279205;279206;279207;279208;279209;279210;279211;279212	374463;374464;374465;374466;374467;374468;374469;374470;374471;374472;374473;374474;374475;374476;374477;374478;374479;374480;374481;374482;374483;374484	374478			21	
SKIETEIK	2	Acetyl (K)	988.54408	0.54407645	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	1	0	0	1		By MS/MS	By matching		13	0						2					1	1		37.883	28.988	2	0.037414	16039	160513_QHF_FH_JSI10Kac_3	53.166	9.9201			0.55849	0.57953	62.799	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7941	0.90349	NaN	1	0	Median	0.39278	0.37172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3741700	2323600	1418100	0	0	0	1685700	830270	855420	2056000	1493300	562670	0	0	0	46108	4837	43394	279213;279214	374485	374485			1	
SKIPNEHK	2	Acetyl (K)	993.52434	0.52434406	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2		1	1	1	1	14.803	5.6431	2	0.012669	5870	160513_QHF_FH_JSI10Kac_4	70.919	27.673			1.1222	1.1479	82.689	4	1	Median	6.4589	5.5535	NaN	1	1	Median	0.80566	0.94211	NaN	1	0	Median	1.1415	1.11	NaN	1	0	Median	1.1032	1.1872	NaN	1	0	Median	12795000	5748100	7046700	1488700	281030	1207600	3197900	1735500	1462400	3347600	1262400	2085200	4760600	2469100	2291500	46109	3857	43395	279215;279216;279217;279218	374486;374487;374488;374489;374490	374488	2964;2965		5	
SKIPNEHKK	3	2 Acetyl (K)	1163.6299	0.62987176	3857	Q92613	JADE3	Protein Jade-3	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.706							6	8	3	3	5	4	5	21.276	12.696	2;3	0.00062465	7706	160513_QHF_FH_JSI12Kac_6	78.655	51.949			0.99277	0.94294	66.48	17	1	Median	1.0562	0.91131	4.7159	3	0	Plateau	0.71224	0.85391	112.78	5	1	Median	1.1968	1.1873	2.9541	4	0	Median	0.99277	1.0786	7.8641	5	0	Median	750960000	390370000	360590000	146370000	72970000	73399000	191820000	116720000	75103000	174380000	77194000	97182000	238400000	123490000	114910000	46110	3857	43396	279219;279220;279221;279222;279223;279224;279225;279226;279227;279228;279229;279230;279231;279232;279233;279234;279235	374491;374492;374493;374494;374495;374496;374497;374498;374499;374500;374501;374502;374503;374504;374505;374506;374507;374508;374509;374510;374511;374512;374513	374512	2964;2965		23	
SKKPSSKGKK	5	4 Acetyl (K)	1241.698	0.69795133	5396	Q9ULD4	BRPF3	Bromodomain and PHD finger-containing protein 3	yes	yes	4	0	0	4		By MS/MS		By MS/MS	13	0						2					1		1	23.394	16.137	2	0.0084389	9970	160513_QHF_FH_JSI12Kac_3	50.284	7.5404			0.90065	1.0186	20.804	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99863	1.18	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81229	0.87922	NaN	1	0	Median	7837200	3707700	4129400	0	0	0	4138800	1918100	2220800	0	0	0	3698300	1789600	1908700	46111	5396	43397	279236;279237	374514;374515	374514	3388;3391;3392;3393		2	
SKLDAEVSK	2	Unmodified	975.52368	0.52367535	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	11.271	11.009	2	0.0011209	8279	160511_QHF_FH_JSI12i_3	88.134	57.447			0.7539	0.53889	29.328	4	0	Linear	0.50555	0.42311	NaN	1	0	Median	0.4847	0.59166	NaN	1	0	Median	0.52961	0.49084	NaN	1	0	Median	0.81929	0.83492	NaN	1	0	Median	509480000	276590000	232890000	62418000	42677000	19742000	48999000	29986000	19013000	156290000	80013000	76278000	241770000	123920000	117860000	46112	1421	43398	279238;279239;279240;279241	374516;374517;374518;374519	374519			4	
SKLDEFTNDFAK	2	Unmodified	1413.6776	0.67760981	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	52.049	51.814	3	0.0037115	44437	160511_QHF_FH_JSI12i_3	56.122	43.355			0.51705	0.52202	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51705	0.52202	NaN	1	1	Median	51487000	30363000	21124000	0	0	0	0	0	0	0	0	0	51487000	30363000	21124000	46113	3285	43399	279242	374520	374520			1	
SKLEDIANAALAASAVTQVAK	2	Unmodified	2070.1321	0.13208339	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				95.868	94.906	3	2.0168E-08	77448	160511_QHF_FH_JSI9i_3	98.132	89.638			1.5713	1.3179	NaN	1	0	Median	1.5713	1.3179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15051000	5302200	9749200	15051000	5302200	9749200	0	0	0	0	0	0	0	0	0	46114	3785	43400	279243	374521;374522	374521			2	
SKLESELANFGPR	1	Unmodified	1446.7467	0.74669243	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		55.688	54.133	2;3	0.00097522	44399	160511_QHF_FH_JSI9i_3	84.479	68.589			0.73394	0.8536	36.797	3	1	Median	1.9613	1.599	NaN	1	0	Median	0.72116	0.84559	1.3335	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144300000	82773000	61524000	29238000	9728200	19510000	115060000	73045000	42014000	0	0	0	0	0	0	46115	2560	43401	279244;279245;279246;279247	374523;374524;374525;374526	374526			4	
SKLETAIASHQQAMEELK	2	Unmodified	2013.0201	0.0200901	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			50.548	48.981	3	0.00021432	40940	160511_QHF_FH_JSI10i_3	57.338	47.757			0.78941	0.93761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78941	0.93761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19057000	10447000	8610500	0	0	0	19057000	10447000	8610500	0	0	0	0	0	0	46116	1360	43402	279248	374527	374527			1	
SKLEVGR	1	Acetyl (K)	829.46577	0.46576654	1513	P41223	BUD31	Protein BUD31 homolog	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			28.469	18.968	2	0.032734	11989	160513_QHF_FH_JSI10Kac_4	68.625	9.8431			0.9768	1.164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9768	1.164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22315000	12018000	10297000	0	0	0	22315000	12018000	10297000	0	0	0	0	0	0	46117	1513	43403	279249	374528	374528			1	
SKLMAPPR	1	Acetyl (K)	940.51642	0.51642191	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	0.667						1	4	4		1	4	2	2	39.832	30.107	2	0.00094168	17827	160513_QHF_FH_JSI12Kac_4	103.56	82.864			3.5556	4.038	86.985	8	7	Median	2.5868	2.1892	NaN	1	1	Median	8.3994	9.9342	100.02	3	2	Plateau	3.4251	3.3243	153.72	2	2	Median	4.8089	5.227	61.503	2	2	Median	54393000	13127000	41266000	7313600	3173000	4140600	20901000	4024900	16876000	13932000	3810600	10122000	12247000	2118500	10128000	46118	4834	43404	279250;279251;279252;279253;279254;279255;279256;279257;279258	374529;374530;374531;374532;374533;374534;374535;374536;374537	374533	3245		9	
SKLMAPPR	1	Acetyl (K);Oxidation (M)	956.51134	0.51133653	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	1	0	1	1				By MS/MS	14	0							2						2	29.106	20.856	2	0.0060351	12788	160513_QHF_FH_JSI12Kac_4	75.109	41.313			1.133	1.2341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.133	1.2341	NaN	1	0	Median	3790400	1879700	1910800	0	0	0	0	0	0	0	0	0	3790400	1879700	1910800	46119	4834	43404	279259;279260	374538;374539	374539	3245	2536	2	
SKLPKPVQDLIK	3	Unmodified	1364.8391	0.83913625	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			4							2	2			53.682	52.112	3	0.00073593	43414	160511_QHF_FH_JSI10i_3	69.716	56.288			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46120	939	43405	279261;279262;279263;279264	374540;374541;374542;374543	374540			4	
SKLPNTVLGK	2	Unmodified	1055.6339	0.63389451	4727	Q9H4M9	EHD1	EH domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	28.842	27.93	2;3	0.0005572	22724	160511_QHF_FH_JSI9i_3	66.595	52.826			0.99375	0.89798	113.41	6	4	Median	1.2298	1.0074	38.178	2	1	Median	2.0534	2.3363	214.41	2	2	Median	0.55427	0.51326	NaN	1	1	Median	1.037	1.0485	NaN	1	0	Median	736230000	317930000	418300000	196060000	82274000	113780000	172470000	68764000	103700000	135180000	64918000	70262000	232530000	101980000	130550000	46121	4727	43406	279265;279266;279267;279268;279269;279270	374544;374545;374546;374547;374548;374549;374550	374547			7	
SKLSQNNFALGYK	2	Acetyl (K)	1510.778	0.77799256	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		67.344	56.439	2	0.00039649	30449	160513_QHF_FH_JSI11Kac_5	93.058	58.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2000000	2000000	0	0	0	0	0	0	0	2000000	2000000	0	0	0	0	46122	5499	43407	279271	374551	374551	3464		1	
SKMIYASSK	2	Acetyl (K)	1055.5321	0.53213155	1236;5500;1925	P23528;Q9Y281;P60981	CFL1;CFL2;DSTN	Cofilin-1;Cofilin-2;Destrin	no	no	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		34.665	25.276	2	0.0030093	14857	160513_QHF_FH_JSI10Kac_4	81.338	49.403			0.46463	0.49963	109.9	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92243	1.0868	NaN	1	0	Median	0.23404	0.2297	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19567000	14085000	5481500	0	0	0	6300100	3152600	3147500	13267000	10933000	2333900	0	0	0	46123	1236;5500;1925	43408	279272;279273	374552;374553;374554	374552	1129;1130		3	
SKNILFVITKPDVYK	3	Acetyl (K)	1806.0291	0.029121869	87;4567	E9PAV3;Q13765;Q9BZK3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein	no	no	1	0	0	2			By MS/MS		16	0									1			1		83.761	74.446	3	0.0015408	41146	160513_QHF_FH_JSI11Kac_6	80.638	58.798			0.21335	0.20712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21335	0.20712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21651000	18846000	2805800	0	0	0	0	0	0	21651000	18846000	2805800	0	0	0	46124	87;4567	43409	279274	374555	374555	58;59		1	
SKNLQPK	2	Acetyl (K)	855.48142	0.48141661	539	O75528	TADA3	Transcriptional adapter 3	yes	yes	1	0	0	1			By matching	By MS/MS	13.3	0.471						2	1					1	2	16.829	9.5114	2	0.039131	6938	160513_QHF_FH_JSI12Kac_3	64.567	13.935			0.97419	1.074	24.715	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5474	1.4868	NaN	1	0	Median	0.9054	0.99155	11.297	2	0	Median	41165000	21683000	19483000	0	0	0	0	0	0	7058500	2612600	4446000	34107000	19070000	15037000	46125	539	43410	279275;279276;279277	374556	374556	280		1	
SKPAPSESAGYGIPLK	2	Unmodified	1600.8461	0.84607213	3072	Q6NUK4	REEP3	Receptor expression-enhancing protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	40.511	40.123	3	9.6711E-06	35209	160511_QHF_FH_JSI11i_3	93.909	82.389			1.1723	1.1794	14.984	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73327	0.90203	NaN	1	0	Median	1.2403	1.1582	NaN	1	0	Median	1.1723	1.1794	NaN	1	0	Median	286670000	148890000	137780000	0	0	0	34063000	21707000	12356000	79147000	33795000	45352000	173460000	93385000	80074000	46126	3072	43411	279278;279279;279280	374557;374558;374559	374557			2	
SKPATGEPQK	2	Unmodified	1041.5455	0.54547343	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		5.0445	4.9132	2;3	0.0019797	2717	160511_QHF_FH_JSI11i_3	79.148	53.411			1.1307	1.0439	62.236	3	2	Plateau	0.41635	0.35747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1256	1.0388	12.658	2	1	Median	NaN	NaN	NaN	0	0	Median	362280000	204210000	158070000	121290000	95495000	25792000	0	0	0	240990000	108710000	132280000	0	0	0	46127	5058	43412	279281;279282;279283	374560;374561;374562	374560			3	
SKPELPPGLSPEATAPVTPSRPEGGEPGLSK	2	Unmodified	3081.5982	0.59824387	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	2		By MS/MS	By MS/MS		3	0			2								1	1		62.583	61.827	4	1.2425E-12	51868	160511_QHF_FH_JSI10i_3	73.975	68.314			0.98086	1.0095	2.1637	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91241	1.025	NaN	1	0	Median	1.0544	0.99413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	178160000	87243000	90920000	0	0	0	101820000	52709000	49113000	76341000	34534000	41807000	0	0	0	46128	4378	43413	279284;279285	374563;374564;374565;374566;374567;374568	374567			6	
SKPFAFGNSSATGSLFGFSFNAPLK	2	Unmodified	2578.2856	0.28562392	1685;31;191	P49792;A6NKT7;O14715	RANBP2;RGPD3;RGPD8	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.147	82.837	3	6.9478E-42	44358	160513_QHF_FH_JSI12Kac_6	161.68	142.73			0.90179	0.87055	13.617	4	0	Median	1.117	0.94078	NaN	1	0	Median	0.68646	0.80557	NaN	1	0	Median	0.82781	0.79241	NaN	1	0	Median	0.98239	1.0557	NaN	1	0	Median	629830000	336920000	292900000	213620000	99418000	114200000	240970000	142380000	98597000	82464000	45913000	36551000	92768000	49215000	43553000	46129	1685;31;191	43414	279286;279287;279288;279289	374569;374570;374571;374572;374573;374574;374575;374576	374573			8	
SKPGAAMVEMADGYAVDR	1	2 Oxidation (M)	1898.8502	0.85024758	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	3	2		30.635	29.652	3	9.1796E-05	24332	160511_QHF_FH_JSI10i_3	71.742	65.838			1.0384	0.96233	32.398	7	4	Median	1.7245	1.4131	54.334	2	1	Median	0.88822	1.0143	18.059	3	2	Median	0.94584	0.8601	14.885	2	1	Median	NaN	NaN	NaN	0	0	Median	214180000	98263000	115910000	54989000	21004000	33985000	89960000	45046000	44914000	69226000	32213000	37013000	0	0	0	46130	1063	43415	279290;279291;279292;279293;279294;279295;279296	374577;374578;374579;374580;374581;374582;374583;374584;374585;374586	374580		700;701	10	
SKPGAAMVEMADGYAVDR	1	Oxidation (M)	1882.8553	0.85533296	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		41.832	40.908	3	2.5584E-07	34614	160511_QHF_FH_JSI9i_3	92.307	77.152			0.95774	0.98021	26.878	5	1	Median	1.1915	0.99026	NaN	1	0	Median	0.86854	0.99753	15.747	2	1	Median	0.7989	0.73968	39.818	2	0	Median	NaN	NaN	NaN	0	0	Median	388300000	205870000	182430000	46240000	18427000	27813000	116960000	64015000	52944000	225100000	123420000	101680000	0	0	0	46131	1063	43415	279297;279298;279299;279300;279301;279302;279303	374587;374588;374589;374590;374591;374592;374593;374594	374594		700;701	8	
SKPGAAMVEMADGYAVDR	1	Unmodified	1866.8604	0.86041834	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.11		5	9						3	6	5	4	2	55.75	53.378	2;3	3.2385E-15	47994	160511_QHF_FH_JSI11i_3	177.58	171.97			0.936	0.99422	34.076	17	5	Median	1.398	1.1542	14.243	6	2	Median	0.86615	1.0052	35.554	5	1	Median	0.7282	0.718	28.531	4	1	Median	0.92232	0.94607	49.267	2	1	Median	5158100000	2448900000	2709200000	1479900000	703360000	776510000	1684100000	772930000	911210000	1812100000	860470000	951650000	181980000	112110000	69862000	46132	1063	43415	279304;279305;279306;279307;279308;279309;279310;279311;279312;279313;279314;279315;279316;279317;279318;279319;279320	374595;374596;374597;374598;374599;374600;374601;374602;374603;374604;374605;374606;374607;374608;374609;374610;374611;374612;374613;374614;374615;374616;374617;374618;374619;374620;374621;374622;374623;374624;374625;374626	374602			32	
SKPIPIMPASPQK	2	Unmodified	1392.7799	0.77990682	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	39.242	38.358	2;3	0.00095882	32207	160511_QHF_FH_JSI10i_3	57.136	50.162			1.2408	1.0045	21.38	7	2	Median	1.3099	1.0537	6.7554	2	0	Median	0.84717	0.98179	1.9467	2	0	Median	1.4002	1.3427	5.5198	2	2	Median	0.71708	0.72586	NaN	1	0	Median	2167100000	1012200000	1154900000	324960000	144050000	180910000	475990000	258640000	217350000	612640000	249460000	363180000	753550000	360080000	393470000	46133	133	43416	279321;279322;279323;279324;279325;279326;279327	374627;374628;374629;374630;374631;374632;374633;374634;374635;374636;374637;374638	374632			12	
SKPLDNASK	2	Unmodified	958.50836	0.50835964	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	5.4923	5.5878	2	0.004151	3152	160511_QHF_FH_JSI12i_3	99.688	62.129			0.98234	0.98878	14.313	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98234	0.98878	14.313	2	2	Median	346930000	175230000	171710000	0	0	0	0	0	0	0	0	0	346930000	175230000	171710000	46134	104	43417	279328;279329	374639;374640	374640			2	
SKPNLPSESR	1	Unmodified	1113.5778	0.57783619	2263	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.863	12.1	3	0.0075755	9532	160511_QHF_FH_JSI10i_3	33.761	26.714			0.69241	0.7915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69241	0.7915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47699000	30197000	17502000	0	0	0	47699000	30197000	17502000	0	0	0	0	0	0	46135	2263	43418	279330	374641	374641			1	
SKPSFHAPEPK	2	Unmodified	1223.6299	0.62987176	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			17.785	16.666	3	0.01678	13625	160511_QHF_FH_JSI10i_3	37.144	21.181			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46136	733	43419	279331;279332	374642;374643	374642			2	
SKPSTGK	2	Acetyl (K)	745.39702	0.39701828	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	6.908	-0.22114	2	0.028772	2561	160513_QHF_FH_JSI12Kac_3	77.282	12.479			5.7064	6.2614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.7064	6.2614	NaN	1	1	Median	7634600	2036500	5598200	0	0	0	0	0	0	0	0	0	7634600	2036500	5598200	46137	3521	43420	279333	374644	374644			1	
SKPVETPPEQNGTLTSQPNNR	1	Unmodified	2293.1299	0.12985156	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		25.964	25.19	3	1.1119E-06	21516	160511_QHF_FH_JSI11i_3	81.003	77.541			1.0936	0.99567	23.442	3	1	Plateau	1.1611	1.0499	NaN	1	0	Median	0.57003	0.66063	NaN	1	1	Median	0.93571	0.88657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97066000	45354000	51711000	47066000	17722000	29344000	12706000	7975400	4730900	37294000	19658000	17636000	0	0	0	46138	720	43421	279334;279335;279336;279337	374645;374646;374647;374648	374645			4	
SKPVFSESLSD	1	Unmodified	1194.5768	0.57683314	397	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.926	3	1	3							1	2	2	2	40.744	40.118	2	0.01208	34448	160511_QHF_FH_JSI11i_2	82.645	71.423			1.2679	1.2223	51.545	7	1	Median	1.4763	1.1783	NaN	1	0	Median	2.0925	2.446	82.428	2	0	Median	1.0723	1.0563	20.644	2	1	Median	1.2244	1.2756	22.131	2	0	Median	806250000	363100000	443150000	25207000	11079000	14129000	148980000	69792000	79189000	303570000	135950000	167620000	328490000	146280000	182210000	46139	397	43422	279338;279339;279340;279341;279342;279343;279344	374649;374650;374651	374650			3	
SKQEALK	2	Unmodified	802.45487	0.45486751	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	1.2095	1.2928	3	0.0067413	515	160511_QHF_FH_JSI12i_3	60.682	8.2791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158020000	0	158020000	0	0	0	0	0	0	0	0	0	158020000	0	158020000	46140	4876	43423	279345	374652	374652			1	
SKSESPK	2	Acetyl (K);Acetyl (Protein N-term)	845.41306	0.41306227	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						2	1	1	11.533	4.0685	2	0.00015986	3445	160513_QHF_FH_JSI10Kac_1	79.116	45.758			0.86809	1.0019	10.761	4	0	Median	NaN	NaN	NaN	0	0	Median	0.86809	1.0063	4.9958	2	0	Median	1.0678	1.0334	NaN	1	0	Median	0.77459	0.82639	NaN	1	0	Median	28369000	15076000	13293000	0	0	0	9778300	5287500	4490800	7922300	3700900	4221400	10668000	6087800	4580400	46141	936	43424	279346;279347;279348;279349	374653;374654;374655;374656	374656	697;698		4	
SKSESPKEPEQLRK	3	Acetyl (K);Acetyl (Protein N-term)	1725.8897	0.88972785	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	1	0	3				By MS/MS	14	0							1						1	32.337	23.451	3	0.00091769	14226	160513_QHF_FH_JSI12Kac_4	49.929	39.142			1.0296	1.1392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0296	1.1392	NaN	1	0	Median	30971000	15580000	15391000	0	0	0	0	0	0	0	0	0	30971000	15580000	15391000	46142	936	43425	279350	374657	374657	697;698		1	
SKSFQQSSLSR	1	Acetyl (K);Acetyl (Protein N-term)	1337.6575	0.65754307	1556	P43243	MATR3	Matrin-3	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.5				3	3						2	2	2	49.77	40.478	2	1.0848E-18	17935	160513_QHF_FH_JSI10Kac_2	169.58	143.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46143	1556	43426	279351;279352;279353;279354;279355;279356	374658;374659;374660;374661;374662;374663	374659	1571		6	
SKTEADMEEYIWENSSSER	1	Unmodified	2289.9696	0.96957067	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		59.873	59.873	3	0.0018477	53166	160511_QHF_FH_JSI11i_3	49.773	31.91			0.92943	0.84632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92943	0.84632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32823000	11473000	21350000	0	0	0	0	0	0	32823000	11473000	21350000	0	0	0	46144	2107	43427	279357;279358	374664;374665	374664			2	
SKTEALK	2	Unmodified	775.44397	0.44396847	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	4.8101	4.5845	2	0.052047	2221	160511_QHF_FH_JSI12i_3	86.794	24.077			0.91436	1.011	33.972	4	0	Median	1.191	1.0216	NaN	1	0	Median	0.83851	1.038	NaN	1	0	Median	0.51318	0.51735	NaN	1	0	Median	0.99706	1.0005	NaN	1	0	Median	1210600000	607330000	603290000	121150000	58618000	62537000	166150000	86158000	79988000	109110000	72025000	37081000	814210000	390530000	423680000	46145	1804	43428	279359;279360;279361;279362	374666	374666			1	
SKVDDLR	1	Unmodified	831.44503	0.4450311	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.7472	7.7472	2	0.055974	5443	160511_QHF_FH_JSI11i_3	84.568	19.764			1.2111	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2111	1.1267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	223580000	109550000	114030000	0	0	0	0	0	0	223580000	109550000	114030000	0	0	0	46146	1983	43429	279363	374667	374667			1	
SKVDEAVAVLQAHHAK	2	Unmodified	1701.9162	0.91621738	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			4							3		1		40.851	39.699	3;4	0.00018916	33630	160511_QHF_FH_JSI11i_3	62.861	56.132			1.6755	1.4505	23.407	4	1	Median	1.5948	1.3044	28.052	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.4442	1.3346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	178280000	68798000	109480000	105900000	40852000	65048000	0	0	0	72382000	27946000	44436000	0	0	0	46147	2385	43430	279364;279365;279366;279367	374668;374669;374670;374671;374672	374668			5	
SKVDEAVAVLQAHQAK	2	Unmodified	1692.9159	0.91588303	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		2	12							4	4	4	2	45.394	44.488	2;3;4	3.5577E-19	38909	160511_QHF_FH_JSI11i_3	218.31	193.45			0.85852	0.79995	28.665	13	3	Median	1.1937	0.96314	36.469	4	1	Median	0.66906	0.79569	12.451	4	0	Median	0.89583	0.84487	37.518	4	2	Median	1.0578	1.0876	NaN	1	0	Median	3795400000	1955500000	1839900000	882170000	322380000	559780000	1132100000	665760000	466340000	1396100000	786600000	609520000	385000000	180710000	204290000	46148	1009;4688	43431	279368;279369;279370;279371;279372;279373;279374;279375;279376;279377;279378;279379;279380;279381	374673;374674;374675;374676;374677;374678;374679;374680;374681;374682;374683;374684;374685;374686;374687;374688;374689;374690;374691;374692	374677			20	
SKVDQIQEIVTGNPTVIK	2	Unmodified	1968.0892	0.089155943	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.612	1	6	9							5	5	4	2	67.71	66.887	2;3	9.1633E-81	57678	160511_QHF_FH_JSI12i_3	234.21	219.01			1.0414	0.97491	20.901	15	2	Plateau	1.3555	1.1117	21.074	5	2	Median	0.86479	1.0144	24.975	5	0	Median	1.0414	1.0381	3.7369	3	0	Median	0.87521	0.88162	7.0768	2	0	Median	4895200000	2332000000	2563100000	502390000	226450000	275940000	1000200000	533820000	466390000	1876800000	853430000	1023400000	1515700000	718320000	797420000	46149	1600	43432	279382;279383;279384;279385;279386;279387;279388;279389;279390;279391;279392;279393;279394;279395;279396;279397	374693;374694;374695;374696;374697;374698;374699;374700;374701;374702;374703;374704;374705;374706;374707;374708;374709;374710;374711;374712;374713;374714;374715;374716;374717;374718;374719	374717			27	
SKVEETTEHLVTK	2	Unmodified	1499.7831	0.78313752	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.812	23.793	3	0.0046712	19729	160511_QHF_FH_JSI12i_3	53.363	37.976			0.874	0.92266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.874	0.92266	NaN	1	1	Median	48603000	22487000	26116000	0	0	0	0	0	0	0	0	0	48603000	22487000	26116000	46150	1779	43433	279398	374720	374720			1	
SKVGDMLEK	2	Acetyl (K);Oxidation (M)	1063.522	0.52196079	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	1	0	1	1		By MS/MS		By MS/MS	14	0							2				1		1	30.778	21.543	2	0.028453	13479	160513_QHF_FH_JSI12Kac_4	41.876	25.336			0.7949	0.84632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7949	0.84632	NaN	1	0	Median	2769700	1578900	1190800	0	0	0	0	0	0	0	0	0	2769700	1578900	1190800	46151	2909	43434	279399;279400	374721;374722	374722	2711		2	
SKVGDMLEK	2	Acetyl (K)	1047.527	0.52704617	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	52.636	42.117	2	0.011747	24121	160513_QHF_FH_JSI12Kac_4	70.1	47.36			0.85349	0.9254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85349	0.9254	NaN	1	1	Median	20961000	13630000	7330800	0	0	0	0	0	0	0	0	0	20961000	13630000	7330800	46152	2909	43434	279401	374723	374723	2711		1	
SKVPVLDEGLTSVETYTPAIR	1	Unmodified	2274.2107	0.21072764	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		86.25	86.25	3	3.0496E-06	76870	160511_QHF_FH_JSI11i_3	71.853	67.2			0.52425	0.48177	35.659	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52425	0.48177	35.659	2	1	Median	NaN	NaN	NaN	0	0	Median	70852000	42924000	27928000	0	0	0	0	0	0	70852000	42924000	27928000	0	0	0	46153	3819	43435	279402;279403	374724;374725;374726	374724			3	
SKWEMDTSEAK	2	Unmodified	1310.5813	0.58126659	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		22.501	22.501	2	0.018964	18944	160511_QHF_FH_JSI11i_3	77.677	50.563			2.5863	2.4723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5863	2.4723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18908000	5805800	13102000	0	0	0	0	0	0	18908000	5805800	13102000	0	0	0	46154	1676	43436	279404	374727	374727			1	
SKWTPLETQEK	2	Unmodified	1345.6878	0.68778057	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			30.251	28.884	3	0.01168	23978	160511_QHF_FH_JSI10i_3	46.378	39.718			1.113	1.0803	28.414	2	1	Median	1.0985	0.8837	NaN	1	0	Median	1.1277	1.3207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52094000	23562000	28532000	24876000	12070000	12805000	27218000	11492000	15726000	0	0	0	0	0	0	46155	3620	43437	279405;279406	374728;374729	374728			2	
SKYDEIFYNLAPADGK	2	Unmodified	1829.8836	0.88357984	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	70.008	69.554	2;3	0.0037723	61087	160511_QHF_FH_JSI11i_2	53.504	49.663			0.97615	0.97492	21.042	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1405	1.1313	NaN	1	1	Median	0.8355	0.84014	NaN	1	1	Median	69621000	36156000	33465000	0	0	0	0	0	0	33372000	18021000	15352000	36249000	18135000	18113000	46156	5163	43438	279407;279408	374730;374731	374730			2	
SKYHPDEVGK	2	Acetyl (K)	1200.5775	0.57750184	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		22.116	12.687	2;3	0.00091168	9106	160513_QHF_FH_JSI11Kac_5	77.597	70.03			0.50258	0.48549	44.552	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50258	0.48549	44.552	2	2	Median	NaN	NaN	NaN	0	0	Median	11609000	7947800	3661700	0	0	0	0	0	0	11609000	7947800	3661700	0	0	0	46157	4521	43439	279409;279410	374732;374733	374733	3180		2	
SKYPWHDTLG	1	Acetyl (K)	1244.5826	0.58258722	2625	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		64.58	53.659	2	0.040156	29057	160513_QHF_FH_JSI11Kac_5	45.161	40.196			0.36877	0.36352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36877	0.36352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3714700	2325100	1389600	0	0	0	0	0	0	3714700	2325100	1389600	0	0	0	46158	2625	43440	279411	374734	374734			1	
SLAADTKK	2	Unmodified	832.46543	0.46543219	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		5.8677	5.6196	2;3	0.010335	3543	160511_QHF_FH_JSI11i_3	46.462	12.209			1.0926	1.1374	153.55	2	2	Median	NaN	NaN	NaN	0	0	Median	2.9537	3.3688	NaN	1	1	Median	0.40419	0.38404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	242610000	133150000	109470000	0	0	0	36337000	10797000	25540000	206280000	122350000	83929000	0	0	0	46159	5436	43441	279412;279413	374735;374736	374735			2	
SLAAEEEAAR	0	Unmodified	1045.504	0.50400254	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		2	0		3								1	1	1		17.373	16.766	2	0.0025124	14198	160511_QHF_FH_JSI10i_2	59.426	48.716			1.0622	0.95944	15.391	3	0	Median	1.0622	0.95944	NaN	1	0	Median	0.67787	0.83538	NaN	1	0	Median	1.151	1.1359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	188670000	96597000	92068000	47024000	23717000	23308000	59044000	32280000	26764000	82597000	40601000	41996000	0	0	0	46160	2636	43442	279414;279415;279416	374737	374737			1	
SLAAEWGK	1	Unmodified	860.43922	0.43921744	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.39	33.46	2	0.0045508	29300	160511_QHF_FH_JSI10i_2	67.169	34.699			2.1577	2.2194	13.85	3	3	Plateau	3.3516	2.8951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1577	2.1947	NaN	1	1	Median	2.2879	2.53	NaN	1	1	Median	992740000	230100000	762640000	288380000	52312000	236070000	0	0	0	455450000	100760000	354690000	248910000	77027000	171880000	46161	2754	43443	279417;279418;279419;279420	374738;374739;374740;374741	374741			4	
SLAASSSFYGQR	0	Unmodified	1272.6099	0.6098646	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	6.09		4	3					1	2	3	2	3	2	39.18	35.738	2	1.8142E-05	30596	160511_QHF_FH_JSI12i_3	112.36	72.312			1.1189	1.0689	55.424	10	1	Median	1.2986	1.0844	11.809	3	0	Median	0.92194	1.0891	31.305	2	0	Median	1.056	1.0537	101.72	3	1	Median	0.92123	0.97909	16.206	2	0	Median	305170000	160890000	144270000	69585000	32208000	37377000	90252000	52608000	37644000	71185000	33404000	37781000	74144000	42673000	31471000	46162	2466	43444	279421;279422;279423;279424;279425;279426;279427;279428;279429;279430	374742;374743;374744;374745;374746;374747;374748;374749;374750;374751;374752;374753;374754;374755	374755			14	
SLADELALVDVLEDK	1	Unmodified	1628.8509	0.85088273	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	2.69	7	13	7						1	5	5	4	14	102.09	101.6	2;3	1.9049E-104	46786	160513_QHF_FH_JSI12Kac_6	288.51	226.2			0.94354	0.95693	19.205	24	5	Median	1.0784	0.89487	7.3733	5	0	Median	0.88484	1.0115	6.1265	5	0	Median	1.0054	0.968	11.232	4	1	Median	0.90651	0.97685	28.078	10	4	Median	21226000000	10271000000	10955000000	6344000000	2638200000	3705800000	5319400000	2849600000	2469800000	4379400000	2156000000	2223400000	5183200000	2627400000	2555800000	46163	864	43445	279431;279432;279433;279434;279435;279436;279437;279438;279439;279440;279441;279442;279443;279444;279445;279446;279447;279448;279449;279450;279451;279452;279453;279454;279455;279456;279457;279458	374756;374757;374758;374759;374760;374761;374762;374763;374764;374765;374766;374767;374768;374769;374770;374771;374772;374773;374774;374775;374776;374777;374778;374779;374780;374781;374782;374783;374784;374785;374786;374787;374788;374789;374790;374791;374792;374793	374793			37	
SLADIAR	0	Unmodified	744.413	0.41300269	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	27.512	26.836	2	0.022022	23057	160511_QHF_FH_JSI9i_2	56.27	13.056			0.94521	0.99284	11.368	5	0	Median	1.2881	1.1019	NaN	1	0	Median	0.68935	0.80674	NaN	1	0	Median	1.0095	1	NaN	1	0	Median	0.92109	0.98314	1.3891	2	0	Median	975550000	494560000	480990000	336030000	164970000	171050000	107090000	58141000	48946000	102350000	51354000	50993000	430090000	220090000	210000000	46164	1266	43446	279459;279460;279461;279462;279463	374794;374795;374796;374797;374798;374799	374799			6	
SLADIAREEASNFR	0	Unmodified	1577.7798	0.77978347	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			69.226	68.063	2	3.6746E-06	55769	160511_QHF_FH_JSI9i_3	138.42	118.22			1.1872	1.1699	8.1537	4	0	Median	1.4672	1.1985	3.2803	2	0	Median	0.89099	1.0897	9.9	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	391390000	175930000	215450000	237050000	99318000	137740000	154330000	76613000	77719000	0	0	0	0	0	0	46165	1266	43447	279464;279465;279466;279467	374800;374801;374802;374803;374804;374805	374801			6	
SLADLFR	0	Unmodified	820.4443	0.44430282	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.363	67.462	2	0.011246	58854	160511_QHF_FH_JSI11i_2	71.342	23.599			0.75129	0.85549	31.687	4	0	Median	1.5031	1.273	NaN	1	0	Median	0.85502	1.0542	NaN	1	0	Median	0.66014	0.66747	NaN	1	0	Median	0.60814	0.69424	NaN	1	0	Median	86893000	42175000	44718000	21968000	9472900	12495000	31127000	12058000	19070000	23703000	14862000	8841000	10094000	5782500	4311800	46166	681	43448	279468;279469;279470;279471	374806;374807;374808;374809	374808			4	
SLADQGIINYPYSTR	0	Unmodified	1696.842	0.84204938	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	63.949	63.076	2	6.7743E-05	53943	160511_QHF_FH_JSI12i_2	75.045	45.109			0.77537	0.78519	15.764	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90364	0.87777	NaN	1	1	Median	0.6653	0.70236	NaN	1	0	Median	38923000	22782000	16141000	0	0	0	0	0	0	15294000	8529700	6764000	23629000	14253000	9376700	46167	15	43449	279472;279473;279474	374810;374811;374812	374812			3	
SLADVESQVSAQNK	1	Unmodified	1474.7264	0.72635092	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		43.855	43.476	2	9.0606E-06	38673	160511_QHF_FH_JSI9i_1	86.114	70.575			0.85194	0.83748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85194	0.83748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44865000	23075000	21790000	0	0	0	0	0	0	44865000	23075000	21790000	0	0	0	46168	2574	43450	279475;279476	374813;374814	374814			2	
SLAEDFAEQPIK	1	Unmodified	1346.6718	0.67179615	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.77	4.42	4	4	3				2			3	5	2	3	59.881	57.395	2	2.87E-53	50299	160511_QHF_FH_JSI9i_2	219.03	178.31			1.0104	1.0847	15.598	13	5	Median	1.0629	0.91301	11.974	3	0	Median	0.94457	1.1119	17.977	5	3	Median	1.0091	0.99945	15.488	2	1	Median	1.0537	1.0847	2.5525	3	1	Plateau	2023700000	994750000	1029000000	412090000	192640000	219440000	433280000	228870000	204420000	656820000	321370000	335450000	521540000	251860000	269680000	46169	5633	43451	279477;279478;279479;279480;279481;279482;279483;279484;279485;279486;279487;279488;279489	374815;374816;374817;374818;374819;374820;374821;374822;374823;374824;374825;374826;374827;374828;374829;374830;374831;374832	374827			18	
SLAEEQYQDFEAR	0	Unmodified	1584.7056	0.70561548	474	O75110	ATP9A	Probable phospholipid-transporting ATPase IIA	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.238	46.84	2	6.6672E-07	40052	160511_QHF_FH_JSI12i_2	91.937	66.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46170	474	43452	279490	374833	374833			1	
SLAEEYGLDTINK	1	Unmodified	1451.7144	0.71438925	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		59.845	59.34	2	0.00078969	51533	160511_QHF_FH_JSI11i_2	79.82	55.529			0.36929	0.38932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36929	0.38932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37851000	27484000	10367000	0	0	0	0	0	0	37851000	27484000	10367000	0	0	0	46171	2442	43453	279491	374834	374834			1	
SLAEGNLLYQPQLDTLK	1	Unmodified	1902.0098	0.0098429899	4810	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	83.084	82.577	2	7.2816E-06	75513	160511_QHF_FH_JSI12i_1	109.07	85.324			0.25361	0.26537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25361	0.26537	NaN	1	1	Median	62948000	51299000	11649000	0	0	0	0	0	0	0	0	0	62948000	51299000	11649000	46172	4810	43454	279492	374835	374835			1	
SLAEGYFDAAGR	0	Unmodified	1255.5833	0.5833155	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.04		4	4				2	4		3	4	3	4	53.91	49.485	2	5.0538E-23	43484	160511_QHF_FH_JSI9i_2	178.84	165.46			1.1219	1.0762	12.877	11	0	Median	1.2684	1.0282	10.169	3	0	Median	0.76184	0.92206	0.034706	2	0	Median	1.1434	1.1624	1.6433	3	0	Median	0.97284	1.0762	16.45	3	0	Median	1521600000	741330000	780310000	246910000	115660000	131250000	282970000	165930000	117040000	488570000	212880000	275690000	503190000	246870000	256330000	46173	380	43455	279493;279494;279495;279496;279497;279498;279499;279500;279501;279502;279503;279504;279505;279506	374836;374837;374838;374839;374840;374841;374842;374843;374844;374845;374846;374847;374848;374849;374850;374851;374852;374853;374854;374855;374856;374857;374858;374859	374845			24	
SLAEIVKK	2	Unmodified	886.54877	0.54876789	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	28.824	28.002	2;3	0.0036213	23881	160511_QHF_FH_JSI11i_3	94.302	49.855			1.2488	1.2568	62.576	5	3	Median	1.6998	1.3859	NaN	1	1	Median	1.1929	1.3824	13.478	2	0	Median	1.2488	1.1754	NaN	1	1	Median	0.3106	0.33347	NaN	1	1	Median	295210000	165010000	130200000	55637000	24387000	31250000	116870000	66660000	50208000	74952000	38930000	36022000	47754000	35036000	12718000	46174	1190	43456	279507;279508;279509;279510;279511;279512	374860;374861;374862;374863;374864;374865	374860			6	
SLAEMESSHQQVMEELQR	0	Unmodified	2130.9674	0.9674026	4672	Q9H2D6	TRIOBP	TRIO and F-actin-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	58.575	58.291	3	1.3332E-11	51731	160511_QHF_FH_JSI11i_3	116.6	106.91			0.95206	1.0543	47.662	4	2	Median	NaN	NaN	NaN	0	0	Median	0.99701	1.2157	NaN	1	0	Median	1.2919	1.2143	78.802	2	2	Median	0.90914	0.9144	NaN	1	0	Median	134320000	67826000	66493000	0	0	0	22854000	10886000	11968000	59161000	24833000	34329000	52304000	32107000	20197000	46175	4672	43457	279513;279514;279515;279516	374866;374867;374868;374869;374870	374867			5	
SLAESELR	0	Unmodified	903.46616	0.46616048	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			22.601	21.675	2	0.020585	18550	160511_QHF_FH_JSI9i_2	45.68	12.13			1.0072	1.0595	7.6938	2	1	Median	1.2377	1.1187	NaN	1	0	Median	0.81963	1.0034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87419000	45033000	42386000	47724000	23426000	24298000	39695000	21607000	18088000	0	0	0	0	0	0	46176	2168	43458	279517;279518	374871;374872	374871			2	
SLAFTVYATHR	0	Unmodified	1264.6564	0.65642086	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	58.027	48.883	2;3	1.1797E-13	26804	160513_QHF_FH_JSI10Kac_6	152.28	112.28			1.1384	1.2346	27.156	5	1	Median	1.6622	1.4642	NaN	1	0	Median	0.84231	0.97558	31.975	2	1	Median	1.6604	1.5565	NaN	1	0	Median	1.1384	1.2346	NaN	1	0	Median	113720000	55377000	58341000	28690000	11254000	17436000	65912000	35902000	30010000	10220000	3984600	6235000	8896400	4236400	4660100	46177	162	43459	279519;279520;279521;279522;279523	374873;374874;374875	374875			3	
SLAGAAQILLK	1	Unmodified	1083.6652	0.66519463	5027	Q9NVC6	MED17	Mediator of RNA polymerase II transcription subunit 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	75.703	74.657	2	0.00010925	62629	160511_QHF_FH_JSI10i_3	85.676	69.005			0.92921	0.94153	11.483	3	0	Plateau	1.0935	0.90542	NaN	1	0	Median	0.9837	1.1232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9283	0.94153	NaN	1	0	Median	141040000	75568000	65471000	35374000	17582000	17792000	48540000	26517000	22023000	0	0	0	57125000	31469000	25656000	46178	5027	43460	279524;279525;279526	374876;374877	374876			2	
SLAGFQESILTDKK	2	Unmodified	1535.8195	0.81952302	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	61.267	60.669	3	0.00010489	52212	160511_QHF_FH_JSI12i_3	94.487	75.164			1.0521	1.0774	27.739	3	3	Median	NaN	NaN	NaN	0	0	Median	1.3569	1.5475	NaN	1	1	Median	0.97017	0.89723	NaN	1	1	Median	1.0521	1.0774	NaN	1	1	Median	205220000	101980000	103240000	0	0	0	19815000	7176800	12638000	87584000	47740000	39845000	97825000	47065000	50759000	46179	2119	43461	279527;279528;279529	374878;374879;374880	374880			3	
SLAGMLTPYVAR	0	Unmodified	1277.6802	0.68019277	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.635	77.241	2	0.00020957	63583	160511_QHF_FH_JSI9i_3	95.573	75.244			1.101	0.92038	NaN	1	1	Median	1.101	0.92038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15958000	8092600	7865200	15958000	8092600	7865200	0	0	0	0	0	0	0	0	0	46180	486	43462	279530	374881	374881			1	
SLAGPGTEPDK	1	Unmodified	1070.5244	0.52440364	3169	Q6XZF7	DNMBP	Dynamin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.732	17.247	2	0.00020903	14683	160511_QHF_FH_JSI10i_1	80.706	37.837			0.51798	0.51763	21.513	4	0	Median	0.78643	0.64945	NaN	1	0	Median	0.35564	0.41644	NaN	1	0	Median	0.46763	0.4493	NaN	1	0	Median	0.57375	0.59634	NaN	1	0	Median	216180000	140300000	75880000	46351000	23644000	22707000	57937000	40479000	17458000	47837000	30036000	17801000	64055000	46143000	17913000	46181	3169	43463	279531;279532;279533;279534	374882;374883;374884;374885;374886;374887	374885			6	
SLAGSSGPGASSGTSGDHGELVVR	0	Unmodified	2184.0407	0.040702201	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.24	6	8	7				3	4	4	6	9	9	8	38.764	34.916	2;3	0	30720	160511_QHF_FH_JSI11i_3	505.06	482.99			0.97203	1.0403	14.13	32	0	Median	1.266	1.0589	4.7593	6	0	Median	0.9421	1.132	12.464	9	0	Median	0.98636	0.94603	10.184	9	0	Median	0.85599	0.93785	14.721	8	0	Median	15860000000	7862800000	7996700000	2848300000	1339900000	1508400000	4142200000	2183900000	1958200000	6153900000	2958800000	3195100000	2715200000	1380200000	1334900000	46182	1327	43464	279535;279536;279537;279538;279539;279540;279541;279542;279543;279544;279545;279546;279547;279548;279549;279550;279551;279552;279553;279554;279555;279556;279557;279558;279559;279560;279561;279562;279563;279564;279565;279566	374888;374889;374890;374891;374892;374893;374894;374895;374896;374897;374898;374899;374900;374901;374902;374903;374904;374905;374906;374907;374908;374909;374910;374911;374912;374913;374914;374915;374916;374917;374918;374919;374920;374921;374922;374923;374924;374925;374926;374927;374928;374929;374930;374931;374932;374933;374934;374935;374936;374937;374938;374939;374940;374941;374942;374943;374944;374945	374892			58	
SLAHTLLGLLR	0	Unmodified	1192.7292	0.72919187	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	4	2	1	82.767	75.323	2;3	1.9901E-32	42092	160513_QHF_FH_JSI10Kac_6	163.9	137.96			0.78465	0.93228	80.376	9	7	Median	0.59159	0.50594	87.037	3	3	Median	1.3973	1.6712	63.691	4	3	Median	0.68659	0.6652	NaN	1	0	Median	0.33007	0.34801	NaN	1	1	Median	4448900000	2355900000	2093000000	542040000	295860000	246180000	3771400000	1968600000	1802800000	68040000	43401000	24639000	67416000	48015000	19401000	46183	950	43465	279567;279568;279569;279570;279571;279572;279573;279574;279575;279576	374946;374947;374948;374949;374950;374951;374952;374953;374954;374955	374953			10	
SLAIHLWYLLPPTASISR	0	Unmodified	2037.1411	0.14113193	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									4		1	2	1	92.638	84.161	2;3	5.0194E-05	48947	160513_QHF_FH_JSI10Kac_6	147.35	125.15			1.2318	1.1508	34.607	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89489	1.0559	NaN	1	1	Median	1.2318	1.1508	0.69558	2	0	Median	2.1066	2.2235	NaN	1	0	Median	421470000	207560000	213920000	0	0	0	67448000	42202000	25246000	276260000	136000000	140260000	77762000	29353000	48409000	46184	1790	43466	279577;279578;279579;279580	374956;374957;374958	374958			2	
SLAKPETDK	2	Unmodified	987.52368	0.52367535	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	2	4	4	8.8616	8.5697	2;3	0.00020317	6019	160511_QHF_FH_JSI12i_3	71.349	26.188			1.0603	1.1057	27.377	11	1	Median	1.8164	1.5907	3.884	2	0	Median	0.75099	0.92882	9.4022	2	0	Median	1.4344	1.1372	23.01	3	1	Plateau	0.71683	0.73213	22.649	4	0	Linear	1309800000	672690000	637080000	135290000	51123000	84171000	148030000	81577000	66455000	442660000	207210000	235460000	583780000	332780000	250990000	46185	1649	43467	279581;279582;279583;279584;279585;279586;279587;279588;279589;279590;279591;279592	374959;374960;374961;374962;374963;374964;374965;374966;374967;374968	374967			10	
SLAKPETDKEQDSEMEK	3	Unmodified	1963.9045	0.90445122	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							2	2	2		18.433	17.89	3;4	0.00065095	15055	160511_QHF_FH_JSI9i_2	72.634	51.035			0.69499	0.85978	51.131	6	6	Median	0.7974	0.67719	65.4	2	2	Median	0.69499	0.86495	32.487	2	2	Median	0.71048	0.6663	82.974	2	2	Median	NaN	NaN	NaN	0	0	Median	215200000	113340000	101860000	43469000	20757000	22712000	36488000	21976000	14512000	135240000	70609000	64633000	0	0	0	46186	1649	43468	279593;279594;279595;279596;279597;279598	374969;374970;374971;374972;374973;374974	374971			6	
SLALLGALLAAAAAAAVR	0	Unmodified	1621.9879	0.98792576	5167	Q9NZV5	SEPN1	Selenoprotein N	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.97	97.246	3	6.3998E-11	57481	160513_QHF_FH_JSI10Kac_6	124.92	110.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30925000	30925000	0	0	0	0	30925000	30925000	0	0	0	0	0	0	0	46187	5167	43469	279599;279600	374975;374976	374976			2	
SLALLLGYLHDFLK	1	Unmodified	1601.9181	0.91811486	2601	Q15014	MORF4L2	Mortality factor 4-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	4	2	3	99.27	90.929	2;3	5.0253E-61	54697	160513_QHF_FH_JSI10Kac_6	204.64	132.63			1.8914	1.9011	271.37	10	9	Median	0.97327	0.82341	466.81	2	2	Median	4.5839	5.432	308.86	3	3	Median	0.73084	0.69273	30.874	2	2	Median	3.9704	4.1942	336.91	3	2	Median	5128400000	2488800000	2639600000	1697300000	944180000	753120000	2172600000	1014100000	1158500000	613990000	251710000	362270000	644500000	278770000	365740000	46188	2601	43470	279601;279602;279603;279604;279605;279606;279607;279608;279609;279610;279611;279612	374977;374978;374979;374980;374981;374982;374983;374984;374985;374986;374987;374988	374988			12	
SLALLLNYLHDFLK	1	Unmodified	1658.9396	0.93957858	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	99.365	91.526	2;3	5.8234E-74	51844	160513_QHF_FH_JSI11Kac_6	217.88	179.1			3.5198	3.6791	70.439	5	5	Median	2.3859	2.0567	83.311	2	2	Median	2.9392	3.5301	95.978	2	2	Median	NaN	NaN	NaN	0	0	Median	3.5198	3.6791	NaN	1	1	Median	1609400000	332690000	1276700000	507120000	115660000	391460000	978780000	164680000	814100000	0	0	0	123510000	52350000	71161000	46189	5256	43471	279613;279614;279615;279616;279617;279618	374989;374990;374991;374992;374993;374994	374989			6	
SLALMYESEK	1	Unmodified	1169.5638	0.56382561	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.237	49.71	2	0.0011159	42843	160511_QHF_FH_JSI11i_2	78.655	48.085			0.75406	0.78745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75406	0.78745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77448000	36774000	40674000	0	0	0	0	0	0	77448000	36774000	40674000	0	0	0	46190	720	43472	279619	374995	374995			1	
SLALWGIKGMGILDK	2	Acetyl (K)	1642.9116	0.91164927	5808				yes	yes	1	0	0	1	By MS/MS				16	0									1	1				99.359	90.204	3	0.019486	52026	160513_QHF_FH_JSI9Kac_6	45.864	27.031	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36817000	0	36817000	36817000	0	36817000	0	0	0	0	0	0	0	0	0	46191	5808	43473	279620	374996	374996	3567		1	
SLAMEMVLTGDR	0	Unmodified	1321.637	0.63700733	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	72.614	71.809	2	1.8763E-16	64030	160511_QHF_FH_JSI11i_3	166.93	148.15			0.95675	0.96272	12.989	6	0	Median	1.3456	1.1279	5.6548	2	0	Median	0.71997	0.87743	11.19	2	0	Median	1.0328	0.97593	NaN	1	0	Median	0.88626	0.91511	NaN	1	0	Median	931020000	468650000	462370000	138780000	53368000	85412000	220030000	123500000	96535000	257350000	116140000	141220000	314850000	175640000	139210000	46192	1341	43474	279621;279622;279623;279624;279625;279626	374997;374998;374999;375000;375001;375002;375003;375004;375005	374997			7	
SLAMEMVLTGDRISAQDAK	1	Unmodified	2035.0078	0.0078108544	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				77.299	75.881	3	0.055852	62472	160511_QHF_FH_JSI9i_3	28.083	20.09			0.46206	0.38622	NaN	1	1	Median	0.46206	0.38622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14292000	7706900	6585300	14292000	7706900	6585300	0	0	0	0	0	0	0	0	0	46193	1341	43475	279627	375006	375006			1	
SLAMLGSSEDNTALSR	0	Unmodified	1650.7883	0.78829925	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	58.251	56.906	2	2.6056E-07	48783	160511_QHF_FH_JSI12i_2	157.56	115.56			0.72088	0.81734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72088	0.81734	NaN	1	1	Median	68085000	38570000	29515000	0	0	0	0	0	0	0	0	0	68085000	38570000	29515000	46194	2448	43476	279628	375007	375007			1	
SLAMTKPDR	1	Unmodified	1017.5277	0.52771487	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			16.154	15.16	2;3	0.017132	11897	160511_QHF_FH_JSI9i_3	82.749	22.16			2.1959	2.0938	28.592	2	2	Median	2.1363	1.7105	NaN	1	1	Median	2.2571	2.5629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212240000	83434000	128810000	48341000	16357000	31984000	163900000	67077000	96825000	0	0	0	0	0	0	46195	2517	43477	279629;279630	375008;375009	375009			2	
SLAMTKPDR	1	Acetyl (K)	1059.5383	0.53827956	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.903	31.86	2	0.018131	19234	160513_QHF_FH_JSI11Kac_4	55.549	16.528			0.30392	0.29537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30392	0.29537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2859400	1926400	932960	0	0	0	0	0	0	2859400	1926400	932960	0	0	0	46196	2517	43477	279631	375010	375010	2510		1	
SLANAESQQQR	0	Unmodified	1230.5953	0.59527717	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	3.88	3	3	2				1			4	1	3	1	16.677	15.082	2;3	0.00030737	6750	160511_QHF_FH_JSI11i_1	89.679	54.241			0.93281	0.89633	65.917	7	5	Median	0.57195	0.47954	130.66	2	1	Median	0.97055	1.0931	NaN	1	0	Median	0.93281	0.89633	15.783	3	3	Median	0.39919	0.42798	NaN	1	1	Median	313540000	155220000	158320000	99801000	38736000	61065000	101510000	49406000	52108000	71870000	40575000	31295000	40353000	26503000	13849000	46197	4861	43478	279632;279633;279634;279635;279636;279637;279638;279639;279640	375011;375012;375013;375014;375015;375016;375017;375018	375011			8	
SLANQTR	0	Unmodified	788.41407	0.41406533	4579	Q9C0B5	ZDHHC5	Palmitoyltransferase ZDHHC5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	5.86		2	3				1	2		1	2	3	2	4.7242	1.2622	2	0.020338	2189	160511_QHF_FH_JSI12i_3	57.102	4.4659			1.0069	0.96973	19.002	8	0	Median	1.0252	0.88162	NaN	1	0	Median	0.67287	0.79086	2.705	2	0	Median	1.2463	1.1711	4.1475	3	0	Plateau	0.92344	0.96973	3.668	2	0	Median	3319300000	1745000000	1574300000	850670000	421810000	428870000	1379700000	808040000	571700000	713380000	309790000	403590000	375550000	205390000	170160000	46198	4579	43479	279641;279642;279643;279644;279645;279646;279647;279648	375019;375020;375021;375022;375023;375024;375025	375025			7	
SLAPAGKD	1	Unmodified	757.39702	0.39701828	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				10.199	9.6828	2	0.059987	7374	160511_QHF_FH_JSI9i_2	35.295	2.8248			0.91917	0.78488	NaN	1	0	Median	0.91917	0.78488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80725000	39293000	41432000	80725000	39293000	41432000	0	0	0	0	0	0	0	0	0	46199	1394	43480	279649	375026	375026			1	
SLAPSIHGHDYVK	1	Unmodified	1422.7256	0.72556306	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.55		1	12						4	4	4	4	5	30.167	28.445	2;3;4	8.6474E-08	23912	160511_QHF_FH_JSI10i_3	122.39	100.84			0.97368	1.0534	18.627	15	1	Median	1.3724	1.1745	28.848	3	0	Median	0.90755	1.054	14.636	4	1	Linear	0.85511	0.81606	7.4882	3	0	Median	1.0991	1.1449	7.0098	5	0	Median	3349800000	1636100000	1713600000	231710000	105900000	125810000	348490000	186840000	161660000	948750000	470670000	478090000	1820800000	872710000	948090000	46200	1254	43481	279650;279651;279652;279653;279654;279655;279656;279657;279658;279659;279660;279661;279662;279663;279664;279665;279666	375027;375028;375029;375030;375031;375032;375033;375034;375035;375036;375037;375038;375039;375040;375041;375042;375043;375044;375045;375046;375047;375048;375049;375050;375051;375052;375053;375054	375038			27	
SLAPSIHGHDYVKK	2	Acetyl (K)	1592.8311	0.83109076	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.692	32.121	3	0.00020348	17668	160513_QHF_FH_JSI11Kac_6	100.54	81.331			0.31295	0.29721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31295	0.29721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9794700	7360700	2434000	0	0	0	0	0	0	9794700	7360700	2434000	0	0	0	46201	1254	43482	279667	375055	375055	1150		1	
SLAQAAR	0	Unmodified	715.39769	0.39768698	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	7.6566	7.3004	2	0.0049488	5303	160511_QHF_FH_JSI10i_2	96.666	75.806			0.86704	0.94982	9.4344	6	0	Median	1.293	1.1001	NaN	1	0	Median	0.84489	0.99557	4.9058	2	0	Median	0.83088	0.85265	NaN	1	0	Median	0.85713	0.91204	3.9925	2	0	Median	2714000000	1399100000	1314900000	515040000	247030000	268000000	807210000	393080000	414130000	514050000	257610000	256440000	877700000	501360000	376340000	46202	5616	43483	279668;279669;279670;279671;279672;279673	375056;375057;375058;375059;375060	375060			5	
SLAQAEAEK	1	Unmodified	945.47673	0.47672516	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	3	3	1	13.074	12.646	2	7.0493E-05	9996	160511_QHF_FH_JSI12i_2	96.331	23.846			0.91583	1.0092	54.904	8	5	Median	0.65273	0.53904	NaN	1	1	Median	0.76537	0.95073	58.732	3	2	Median	1.0959	1.0713	68.226	3	2	Median	1.1132	1.1935	NaN	1	0	Median	383110000	201440000	181670000	25722000	16984000	8737800	168070000	94360000	73711000	146960000	67310000	79653000	42350000	22782000	19568000	46203	2636	43484	279674;279675;279676;279677;279678;279679;279680;279681	375061;375062;375063;375064;375065;375066;375067;375068;375069	375063			9	
SLAQFISDQNIK	1	Unmodified	1362.7143	0.71432967	2775	Q16877	PFKFB4	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			69.561	68.089	2	0.0063429	57031	160511_QHF_FH_JSI10i_3	52.79	33.519			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46204	2775	43485	279682	375070	375070			1	
SLAQHPSALR	0	Unmodified	1078.5883	0.5883413	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			15.79	14.777	2	0.001945	11685	160511_QHF_FH_JSI9i_3	66.621	42.466			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46205	3127	43486	279683;279684;279685	375071;375072;375073	375072			3	
SLASDITDEQK	1	Unmodified	1205.5776	0.57756142	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	5.92	4	3				3	2			2	4	3	3	38.655	34.153	2	1.195E-23	30341	160511_QHF_FH_JSI10i_1	180.67	136.32			0.95987	1.002	13.451	9	1	Median	0.95866	0.78994	NaN	1	0	Median	0.91088	1.088	12.184	4	1	Median	0.98925	0.95509	4.8841	2	0	Median	0.99195	1.0603	2.2762	2	0	Median	1946100000	934920000	1011200000	370150000	175670000	194470000	529810000	260820000	269000000	591110000	287070000	304040000	455020000	211360000	243660000	46206	1090	43487	279686;279687;279688;279689;279690;279691;279692;279693;279694;279695;279696;279697	375074;375075;375076;375077;375078;375079;375080;375081;375082;375083;375084;375085;375086;375087;375088;375089;375090;375091;375092	375083			19	
SLASDITDEQKK	2	Unmodified	1333.6725	0.67252444	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	2	3	28.411	27.613	2;3	8.6878E-06	23093	160511_QHF_FH_JSI11i_2	119.53	101.22			0.92562	0.95853	19.462	8	5	Median	1.2661	1.0932	13.795	2	1	Median	1.1624	1.403	NaN	1	1	Median	0.89519	0.87671	18.065	2	2	Median	0.83021	0.85826	4.2031	3	1	Plateau	536950000	257690000	279250000	108880000	45066000	63814000	73625000	33281000	40343000	100820000	55489000	45334000	253620000	123860000	129760000	46207	1090	43488	279698;279699;279700;279701;279702;279703;279704;279705	375093;375094;375095;375096;375097;375098;375099;375100;375101;375102;375103	375098			11	
SLASIVQFYYMWK	1	Oxidation (M)	1650.8116	0.81160087	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.418	87.024	2	3.2001E-32	48995	160513_QHF_FH_JSI11Kac_6	185.77	162.16			0.8309	0.8258	26.822	4	1	Median	1.0811	0.92433	NaN	1	0	Median	0.9822	1.1612	NaN	1	1	Median	0.67143	0.62758	NaN	1	0	Median	0.70291	0.73778	NaN	1	0	Median	711680000	411720000	299960000	151100000	73145000	77956000	167290000	102270000	65020000	188740000	114240000	74501000	204540000	122060000	82484000	46208	606	43489	279706;279707;279708;279709	375104;375105;375106;375107;375108;375109	375105		227	6	
SLASIVQFYYMWK	1	Unmodified	1634.8167	0.81668625	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	1.75				1					6	2	1	2	2	96.88	88.189	2;3	1.6912E-149	52646	160513_QHF_FH_JSI10Kac_6	299.1	226.45			0.76334	0.76765	10.633	6	0	Median	1.0018	0.84231	16.054	2	0	Median	0.74969	0.89128	NaN	1	0	Median	0.77723	0.7298	NaN	1	0	Median	0.72826	0.7642	3.5643	2	0	Median	5121800000	2666900000	2454800000	1250500000	572980000	677480000	2002600000	1110300000	892320000	1111100000	553890000	557170000	757620000	429770000	327850000	46209	606	43489	279710;279711;279712;279713;279714;279715;279716	375110;375111;375112;375113;375114;375115;375116;375117;375118;375119;375120	375120			11	
SLATTRPTVNADDLLK	1	Unmodified	1713.9261	0.92611336	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.4	0.49		3	2							2	2	1		58.175	57.081	3	0.00031735	50128	160511_QHF_FH_JSI9i_2	63.145	39.103			1.0119	1.0001	33.47	5	1	Median	1.1153	0.9425	8.3866	2	0	Median	0.97693	1.1624	20.141	2	1	Median	0.52556	0.53691	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	391250000	193660000	197590000	183890000	90923000	92972000	179300000	89081000	90220000	28054000	13657000	14397000	0	0	0	46210	5432	43490	279717;279718;279719;279720;279721	375121;375122;375123;375124;375125;375126	375124			6	
SLAVVLMHSYTWAQHEQQVGVLAR	0	Unmodified	2722.4013	0.40133915	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			84.657	77.538	3	2.5372E-146	43799	160513_QHF_FH_JSI10Kac_6	313.16	287.17			1.0314	1.0533	43.072	2	1	Median	1.6443	1.4283	NaN	1	0	Median	0.64699	0.77672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171020000	88946000	82078000	75534000	24830000	50704000	95490000	64116000	31374000	0	0	0	0	0	0	46211	211	43491	279722;279723	375127;375128;375129	375129			3	
SLAYIHSFGICHR	0	Unmodified	1559.7667	0.76671637	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			58.179	49.695	3	0.001775	27475	160513_QHF_FH_JSI10Kac_6	51.726	40.464			0.64964	0.7724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64964	0.7724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17886000	9545600	8340500	0	0	0	17886000	9545600	8340500	0	0	0	0	0	0	46212	1689	43492	279724	375130	375130			1	
SLAYLTAATHGLDEEAESLK	1	Unmodified	2118.0481	0.04807899	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							2	6	5	1	85.713	85.125	2;3	2.7688E-21	75740	160511_QHF_FH_JSI11i_3	197.14	183.18			0.65533	0.66845	90.842	12	11	Median	1.0794	0.93795	79.73	2	2	Median	0.44931	0.54421	79.685	5	4	Median	1.8309	1.8642	123.14	4	4	Median	0.358	0.36522	NaN	1	1	Median	1145200000	633410000	511830000	206000000	107060000	98937000	319730000	199260000	120470000	544260000	272200000	272060000	75255000	54891000	20364000	46213	1805	43493	279725;279726;279727;279728;279729;279730;279731;279732;279733;279734;279735;279736;279737;279738	375131;375132;375133;375134;375135;375136;375137;375138;375139;375140;375141;375142;375143;375144;375145;375146;375147;375148	375133			18	
SLAYVDNILK	1	Unmodified	1134.6285	0.62847478	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			72.61	71.806	2	0.00017002	63315	160511_QHF_FH_JSI9i_2	94.692	53.663			0.62572	0.64145	33.305	2	2	Median	0.59808	0.50686	NaN	1	1	Median	0.65464	0.81179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124200000	77958000	46241000	54773000	34573000	20200000	69426000	43384000	26041000	0	0	0	0	0	0	46214	2732	43494	279739;279740	375149;375150	375149			2	
SLCIPFKPLCELQPGAK	2	Unmodified	1957.0165	0.016525047	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	86.407	85.785	3	7.9817E-05	70255	160511_QHF_FH_JSI9i_3	72.11	62.53			0.87847	1.0066	11.561	4	1	Linear	1.2014	0.99126	NaN	1	0	Median	0.9848	1.1732	NaN	1	0	Median	0.93859	0.88583	NaN	1	0	Median	1.0225	1.0222	NaN	1	1	Median	310190000	152900000	157290000	41364000	17547000	23817000	54982000	28995000	25987000	123980000	66019000	57965000	89856000	40336000	49520000	46215	878	43495	279741;279742;279743;279744	375151;375152;375153;375154;375155	375154			5	
SLCLGPALIHTAK	1	Unmodified	1379.7595	0.75950572	4298	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	60.261	59.663	3	4.6933E-06	52905	160511_QHF_FH_JSI11i_3	121.45	97.773			1.0544	1.0797	13.428	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9342	1.0797	NaN	1	0	Median	0.9575	0.89559	NaN	1	0	Median	1.1611	1.162	NaN	1	0	Median	257320000	130440000	126880000	0	0	0	38331000	21478000	16853000	96527000	57543000	38984000	122460000	51414000	71047000	46216	4298	43496	279745;279746;279747	375156;375157	375156			1	
SLDAPSWPGVYR	0	Unmodified	1346.6619	0.66190017	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	67.553	66.656	2	0.0011453	57345	160511_QHF_FH_JSI12i_2	91.584	72.313			1.0408	1.099	21.054	3	3	Median	NaN	NaN	NaN	0	0	Median	0.64819	0.79023	NaN	1	1	Median	1.1243	1.099	NaN	1	1	Median	1.0408	1.169	NaN	1	1	Median	127900000	74709000	53195000	0	0	0	39456000	26041000	13415000	41896000	21819000	20077000	46553000	26850000	19703000	46217	2925	43497	279748;279749;279750	375158;375159;375160	375158			3	
SLDDALK	1	Unmodified	760.39668	0.39668393	763	P00374;Q86XF0	DHFR;DHFRL1	Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.869	25.966	2	0.0063068	23142	160511_QHF_FH_JSI12i_1	91.626	53.981			0.9568	0.89016	22.493	2	0	Median	0.91968	0.75926	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99541	1.0436	NaN	1	0	Median	316090000	169520000	146570000	154980000	84768000	70213000	0	0	0	0	0	0	161110000	84750000	76356000	46218	763	43498	279751;279752	375161;375162	375161			2	
SLDDDLDGVPLDATEDSK	1	Unmodified	1903.8535	0.85346151	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										3	1	1	69.53	69.104	2	5.1977E-41	62841	160511_QHF_FH_JSI11i_1	162.72	130.66			1.0675	1.1665	8.2152	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96903	1.1006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1761	1.2362	NaN	1	0	Median	61536000	31902000	29635000	0	0	0	31486000	15555000	15931000	0	0	0	30050000	16347000	13704000	46219	238	43499	279753;279754;279755;279756;279757	375163;375164;375165;375166;375167;375168;375169;375170	375163			8	
SLDDEVNAFK	1	Unmodified	1136.535	0.53496832	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	53.058	50.68	2	1.5884E-05	45010	160511_QHF_FH_JSI9i_1	99.815	77.578			1.1236	1.1463	5.435	5	1	Median	1.3312	1.0794	NaN	1	0	Median	1.0545	1.2529	NaN	1	0	Median	1.1468	1.1265	NaN	1	0	Median	1.1172	1.151	0.58485	2	1	Median	724270000	295140000	429130000	181500000	70342000	111160000	174720000	85153000	89567000	191530000	66513000	125020000	176510000	73136000	103380000	46220	2498	43500	279758;279759;279760;279761;279762	375171;375172;375173;375174;375175;375176;375177;375178;375179	375177			9	
SLDEMEK	1	Unmodified	850.37423	0.37423392	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	18.403	17.984	2	0.0043209	15433	160511_QHF_FH_JSI12i_1	98.997	55.873			1.0464	1.0765	62.705	5	2	Median	1.3004	1.0765	NaN	1	0	Median	0.97922	1.1666	NaN	1	0	Median	2.0897	2.0172	97.745	2	2	Median	0.79718	0.84227	NaN	1	0	Median	2987200000	1110900000	1876300000	527130000	164180000	362950000	722780000	364080000	358700000	1117500000	258380000	859090000	619800000	324260000	295540000	46221	1222	43501	279763;279764;279765;279766;279767	375180;375181;375182;375183;375184;375185;375186;375187	375182			8	
SLDEQANQENDALHK	1	Unmodified	1710.7809	0.78090569	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		23.044	22.833	3	0.0088078	19862	160511_QHF_FH_JSI11i_1	46.319	41.752			0.56602	0.59432	9.155	2	2	Median	NaN	NaN	NaN	0	0	Median	0.49106	0.55706	NaN	1	1	Median	0.65242	0.63406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	77571000	49037000	28534000	0	0	0	34667000	21529000	13138000	42904000	27508000	15396000	0	0	0	46222	17	43502	279768;279769	375188;375189	375188			2	
SLDEVYPDPVR	0	Unmodified	1288.6299	0.62993134	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		53.524	52.724	2	0.0020786	47655	160511_QHF_FH_JSI11i_1	84.17	57.656			0.71243	0.63708	36.621	2	0	Median	1.0021	0.82538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50652	0.49174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122040000	60698000	61345000	46739000	22538000	24202000	0	0	0	75304000	38160000	37143000	0	0	0	46223	2907	43503	279770;279771	375190;375191	375190			0	
SLDFGFTIK	1	Unmodified	1026.5386	0.53859714	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				84.793	74.343	2	0.03839	37897	160513_QHF_FH_JSI9Kac_5	42.109	0			1.2211	1.0014	NaN	1	0	Median	1.2211	1.0014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6046700	2564400	3482300	6046700	2564400	3482300	0	0	0	0	0	0	0	0	0	46224	3799	43504	279772	375192	375192			1	
SLDFLIELLHK	1	Unmodified	1326.7547	0.75473792	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	98.323	93.921	3	1.9522E-20	49025	160513_QHF_FH_JSI11Kac_6	162.26	146.01			0.89456	0.82613	51.252	9	2	Median	1.3858	1.1869	13.494	2	0	Median	0.5321	0.60586	79.053	3	2	Median	1.1427	1.0809	38.015	2	0	Median	0.71838	0.7436	13.193	2	0	Median	826760000	459750000	367010000	96022000	42239000	53783000	260040000	154110000	105930000	112040000	46903000	65136000	358650000	216500000	142160000	46225	2516	43505	279773;279774;279775;279776;279777;279778;279779;279780;279781	375193;375194;375195;375196;375197;375198;375199	375193			7	
SLDFYTR	0	Unmodified	900.43413	0.43413207	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	13.4	4.36		1					2	3	2	2	1	2	3	50.422	41.271	2	0.004105	35632	160511_QHF_FH_JSI12i_2	100.19	49.222			0.91324	0.95339	9.1495	8	0	Median	1.0838	0.92363	1.9214	2	0	Median	0.89653	1.0623	NaN	1	0	Median	0.95531	0.94977	10.24	2	0	Median	0.93026	1.0463	12.897	3	0	Plateau	794110000	361670000	432440000	25340000	11655000	13685000	4083300	2500700	1582600	20598000	9124700	11473000	744090000	338390000	405700000	46226	2221	43506	279782;279783;279784;279785;279786;279787;279788;279789	375200;375201;375202;375203;375204;375205	375201			6	
SLDGEGNFNWR	0	Unmodified	1293.5738	0.57381344	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	53.668	52.847	2	1.8843E-05	46662	160511_QHF_FH_JSI10i_2	103.7	99.249			1.1014	1.1137	17.548	5	0	Median	1.3299	1.1137	NaN	1	0	Median	0.78739	0.95946	NaN	1	0	Median	1.1014	1.1376	NaN	1	0	Median	1.1645	1.282	25.614	2	0	Median	294680000	153030000	141650000	73689000	37784000	35905000	58138000	32834000	25304000	76491000	36227000	40264000	86367000	46186000	40181000	46227	5161	43507	279790;279791;279792;279793;279794	375206;375207;375208;375209;375210;375211;375212;375213	375211			8	
SLDHQAVNFK	1	Unmodified	1157.5829	0.58292157	490	O75182	SIN3B	Paired amphipathic helix protein Sin3b	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.163	30.782	2	0.0050947	26076	160511_QHF_FH_JSI11i_2	56.563	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46228	490	43508	279795	375214	375214			1	
SLDIGNQMNVSEEMK	1	Unmodified	1693.7651	0.76512097	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	62.621	61.976	2	0.00035443	56484	160511_QHF_FH_JSI12i_1	96.103	81.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10147000	0	10147000	0	0	0	0	0	0	0	0	0	10147000	0	10147000	46229	3102	43509	279796	375215	375215			1	
SLDINAFRK	1	Unmodified	1062.5822	0.58219329	3753	Q8WU79	SMAP2	Stromal membrane-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		46.066	45.261	3	0.0007041	37261	160511_QHF_FH_JSI9i_3	52.255	38.902			1.6601	1.4565	30.259	2	0	Median	1.4284	1.1759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9294	1.8039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92134000	38927000	53207000	42220000	19383000	22837000	0	0	0	49914000	19544000	30370000	0	0	0	46230	3753	43510	279797;279798;279799	375216;375217;375218;375219;375220	375219			5	
SLDIQSLDIQCEELSDAR	0	Acetyl (Protein N-term)	2132.9896	0.98957783	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	95.994	95.699	2	0.0060733	86889	160511_QHF_FH_JSI12i_1	43.382	35.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46231	1029	43511	279800	375221	375221			1	
SLDIQVPNFPADETK	1	Unmodified	1672.8308	0.83081599	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.915	80.19	2	0.049975	67116	160511_QHF_FH_JSI10i_3	45.973	34.107			0.91558	0.92959	13.498	4	0	Median	0.91638	0.74327	NaN	1	0	Median	0.91478	1.0149	NaN	1	0	Median	1.0293	0.95561	NaN	1	0	Median	0.87013	0.90429	NaN	1	0	Median	117850000	58026000	59828000	18480000	9521400	8958200	20718000	10857000	9861400	38519000	17329000	21190000	40138000	20319000	19819000	46232	1609	43512	279801;279802;279803;279804	375222	375222			1	
SLDIYSFIK	1	Unmodified	1084.5805	0.58046195	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	89.741	89.162	2	0.00015459	79123	160511_QHF_FH_JSI10i_2	88.948	83.638			0.99042	1.0725	10.524	5	2	Median	1.0874	0.96474	NaN	1	0	Median	0.96786	1.1755	NaN	1	0	Median	1.0737	1.1271	14.561	2	2	Median	0.99042	1.0725	NaN	1	0	Median	138940000	67343000	71597000	15779000	7537300	8241300	23179000	11790000	11388000	75217000	33347000	41870000	24766000	14668000	10098000	46233	4946	43513	279805;279806;279807;279808;279809	375223;375224;375225;375226;375227;375228;375229;375230;375231	375231			9	
SLDKDPLLLSGTHVMEGSGR	1	Unmodified	2111.0681	0.068102925	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		61.104	61.104	4	4.7577E-06	54304	160511_QHF_FH_JSI11i_3	62.274	53.332			0.71697	0.66307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71697	0.66307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44227000	22190000	22037000	0	0	0	0	0	0	44227000	22190000	22037000	0	0	0	46234	1168	43514	279810	375232;375233;375234	375234			3	
SLDKDPMLLSGTHVMEGSGR	1	Unmodified	2129.0245	0.024523551	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		56.222	56.222	3	0.014679	49862	160511_QHF_FH_JSI11i_3	35.421	21.167			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46235	1239	43515	279811	375235	375235			1	
SLDLDGIIADVK	1	Unmodified	1257.6816	0.68163256	83	CON__Q9DCV7			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	95.29	95.018	2	0.0017299	84074	160511_QHF_FH_JSI10i_2	62.466	35.351		+	0.53569	0.34479	35.977	6	6	Plateau	0.3205	0.26925	NaN	1	1	Median	0.53569	0.62285	NaN	1	1	Median	0.3413	0.33257	29.811	2	2	Median	0.37249	0.38451	40.133	2	2	Median	81850000	59339000	22511000	8559800	7423600	1136200	27650000	19215000	8434700	21564000	15855000	5709700	24076000	16846000	7229900	46236	83	43516	279812;279813;279814;279815;279816;279817;279818	375236;375237;375238;375239;375240;375241;375242;375243	375243			8	
SLDLDGIIAEVK	1	Unmodified	1271.6973	0.69728262	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	3	3	2	95.798	95.412	2	2.1587E-42	83959	160511_QHF_FH_JSI11i_2	209.97	131.63		+	0.96002	0.90475	10.141	11	0	Median	0.96387	0.79244	4.0081	3	0	Median	0.72043	0.84434	5.7149	3	0	Plateau	1.0246	1.0479	7.5682	3	0	Plateau	0.92918	1.0039	0.40451	2	0	Median	1394900000	681030000	713900000	226860000	102490000	124370000	362880000	197650000	165230000	416090000	199810000	216290000	389090000	181080000	208010000	46237	53;71	43517	279819;279820;279821;279822;279823;279824;279825;279826;279827;279828;279829	375244;375245;375246;375247;375248;375249;375250;375251;375252;375253;375254;375255;375256;375257;375258;375259;375260;375261;375262;375263;375264;375265;375266;375267;375268;375269;375270;375271;375272;375273;375274;375275;375276;375277	375273			33	
SLDLDISK	1	Unmodified	889.47566	0.47566253	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	1	2	50.712	48.325	2	0.00021551	43543	160511_QHF_FH_JSI10i_1	119.27	50.36			0.94254	1.0598	17.527	6	1	Linear	1.0423	0.86613	NaN	1	0	Median	0.69704	0.844	30.311	2	1	Median	1.0748	1.0432	NaN	1	0	Median	0.8794	0.93713	16.6	2	0	Median	722070000	361910000	360160000	115450000	48472000	66973000	213170000	117850000	95324000	146800000	76319000	70484000	246650000	119270000	127380000	46238	1545	43518	279830;279831;279832;279833;279834;279835;279836	375278;375279;375280;375281;375282;375283;375284;375285;375286;375287;375288	375283			11	
SLDLDSIIAEVK	1	Unmodified	1301.7078	0.70784731	810;79	CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	0		By MS/MS			1	0	1										1			100.79	100.78	2	0.00093835	91456	160511_QHF_FH_JSI10i_1	69.01	34.478		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46239	79;810	43519	279837	375289	375289			1	
SLDLFKK	2	Unmodified	849.496	0.49600404	1492	P40189	IL6ST	Interleukin-6 receptor subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	41.329	40.84	3	0.017903	34904	160511_QHF_FH_JSI12i_3	37.558	19.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46240	1492	43520	279838;279839;279840;279841	375290;375291;375292;375293	375293			4	
SLDLFNCEVTNLNDYR	0	Unmodified	1971.8996	0.89964061	1487;3871	P39687;Q92688	ANP32A;ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	89.574	88.848	2	4.4225E-10	76750	160511_QHF_FH_JSI12i_2	167.14	145.27			1.0237	1.063	29.441	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86543	0.86326	NaN	1	0	Median	1.2108	1.3091	NaN	1	0	Median	44951000	20299000	24652000	0	0	0	0	0	0	28869000	13525000	15344000	16082000	6774500	9307200	46241	1487;3871	43521	279842;279843	375294;375295;375296;375297	375295			4	
SLDLFNCEVTNLNDYRENVFK	1	Unmodified	2589.217	0.21695201	1487	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	100.19	100.05	3	7.1571E-15	88457	160511_QHF_FH_JSI10i_2	131.71	103.51			0.85086	1.0066	15.773	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73627	0.90039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98328	1.1254	NaN	1	1	Median	131510000	79734000	51781000	0	0	0	83508000	54331000	29176000	0	0	0	48007000	25403000	22604000	46242	1487	43522	279844;279845	375298;375299	375299			2	
SLDLIESLLR	0	Unmodified	1157.6656	0.66558856	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	101.69	101.57	2	2.3473E-05	89318	160511_QHF_FH_JSI11i_2	97.965	47.925			0.82341	0.85819	10.38	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.8212	1.0018	NaN	1	1	Median	0.82341	0.814	NaN	1	0	Median	0.82673	0.90479	NaN	1	0	Median	161450000	92865000	68583000	0	0	0	35290000	22550000	12740000	64029000	37855000	26173000	62129000	32459000	29670000	46243	21	43523	279846;279847;279848	375300;375301	375300			2	
SLDLVTMK	1	Unmodified	905.4892	0.4892041	2498;3853	Q14141;Q9NVA2;Q92599	SEPT6;SEPT11;SEPT8	Septin-6;Septin-11;Septin-8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	3	2	53.767	52.969	2	0.00072086	46604	160511_QHF_FH_JSI9i_2	94.302	55.511			1.0596	1.038	28.935	7	2	Median	1.5787	1.3092	57.955	2	1	Median	0.86739	1.038	NaN	1	0	Median	1.2608	1.2499	26.535	2	1	Median	0.97222	1.0422	14.472	2	0	Median	476950000	229500000	247450000	107220000	47141000	60083000	54122000	32012000	22111000	172480000	82130000	90347000	143130000	68214000	74914000	46244	2498;3853	43524	279849;279850;279851;279852;279853;279854;279855;279856;279857;279858	375302;375303;375304;375305;375306;375307;375308;375309;375310;375311;375312;375313;375314;375315	375312			14	
SLDLVTMKK	2	Acetyl (K)	1075.5947	0.59473181	2498;3853	Q14141;Q9NVA2;Q92599	SEPT6;SEPT11;SEPT8	Septin-6;Septin-11;Septin-8	no	no	1	0	0	1			By MS/MS		14	0							1					1		70.256	59.295	2	0.0054454	32576	160513_QHF_FH_JSI11Kac_4	96.331	63.491			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46245	2498;3853	43525	279859	375316	375316	2502		1	
SLDMDSIIAEVK	1	Unmodified	1319.6643	0.66426794	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	4.02	8	13	4				1	2		6	8	7	7	89.012	87.283	2;3	4.0215E-78	80679	160511_QHF_FH_JSI10i_1	245.76	219.38		+	0.93604	0.95224	14.167	25	2	Median	0.98139	0.80399	12.167	6	1	Median	0.79846	0.93606	12.444	7	0	Median	0.95436	0.96773	6.2581	6	0	Median	0.96648	1.0003	19.675	6	1	Median	10832000000	5164600000	5667300000	2103100000	997360000	1105700000	2969800000	1561200000	1408600000	3487100000	1585200000	1901900000	2271900000	1020800000	1251100000	46246	51	43526	279860;279861;279862;279863;279864;279865;279866;279867;279868;279869;279870;279871;279872;279873;279874;279875;279876;279877;279878;279879;279880;279881;279882;279883;279884;279885;279886;279887	375317;375318;375319;375320;375321;375322;375323;375324;375325;375326;375327;375328;375329;375330;375331;375332;375333;375334;375335;375336;375337;375338;375339;375340;375341;375342;375343;375344;375345;375346;375347;375348;375349;375350;375351;375352;375353;375354;375355;375356;375357;375358;375359;375360;375361;375362;375363;375364;375365;375366;375367;375368;375369;375370;375371;375372;375373;375374;375375	375343			58	
SLDMDSIIAEVK	1	Oxidation (M)	1335.6592	0.65918256	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.02	5	2				4	2			2	5	1	5	64.063	58.306	2	8.8228E-31	33425	160513_QHF_FH_JSI10Kac_4	175.91	146.82		+	0.86344	0.91913	13.213	12	4	Median	1.0955	0.87303	NaN	1	0	Median	0.75318	0.89426	14.4	5	1	Median	0.954	0.92592	NaN	1	0	Median	0.90706	0.96279	16.007	5	3	Median	453630000	239880000	213740000	33409000	14671000	18738000	179250000	99604000	79648000	81174000	40286000	40888000	159790000	85323000	74470000	46247	51	43526	279888;279889;279890;279891;279892;279893;279894;279895;279896;279897;279898;279899;279900	375376;375377;375378;375379;375380;375381;375382;375383;375384;375385;375386;375387;375388;375389;375390;375391;375392	375383		23	17	
SLDNFFAK	1	Unmodified	940.46543	0.46543219	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	12	5.2			1					3		2		1	1	66.886	58.46	2	0.0028012	29247	160513_QHF_FH_JSI12Kac_5	88.942	69.465			1.4412	0.95948	23.421	4	1	Linear	1.079	0.8825	38.825	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91808	0.90501	NaN	1	0	Median	0.90035	1.0172	NaN	1	0	Median	73273000	29412000	43861000	62774000	23632000	39142000	0	0	0	5927800	3269400	2658400	4571200	2510500	2060700	46248	5383	43527	279901;279902;279903;279904	375393;375394;375395;375396	375396			4	
SLDNFFAKR	1	Acetyl (K)	1138.5771	0.57710791	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.282	63.899	2	0.025285	34675	160513_QHF_FH_JSI11Kac_6	62.823	42.989			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46249	5383	43528	279905	375397	375397	3379		1	
SLDNGGYYISPR	0	Unmodified	1340.6361	0.63607935	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		44.743	44.25	2	0.0054559	38041	160511_QHF_FH_JSI11i_2	54.286	27.772			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46250	885	43529	279906	375398	375398			1	
SLDNNYSTPNER	0	Unmodified	1408.6219	0.62188585	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	23.277	21.168	2	1.135E-10	18320	160511_QHF_FH_JSI11i_1	143.79	115.06			0.84359	0.79034	5.8371	5	1	Median	0.93808	0.76779	NaN	1	0	Median	0.63742	0.74065	NaN	1	0	Median	0.84816	0.84441	1.0573	2	0	Median	0.75233	0.79034	NaN	1	1	Median	401280000	231040000	170240000	91776000	39175000	52601000	84165000	57279000	26886000	121120000	70834000	50284000	104220000	63754000	40471000	46251	442	43530	279907;279908;279909;279910;279911	375399;375400;375401;375402	375399			4	
SLDPENSETELER	0	Unmodified	1517.6845	0.68454569	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	40.803	38.426	2	6.3884E-16	34477	160511_QHF_FH_JSI10i_1	167.18	150.15			1.114	1.1753	13.004	5	2	Median	1.4931	1.2207	NaN	1	0	Median	1.0218	1.1753	NaN	1	0	Median	1.2044	1.1481	10.341	2	1	Median	0.89191	0.90342	NaN	1	1	Median	508260000	251200000	257060000	104550000	49958000	54594000	120380000	68980000	51396000	151560000	62665000	88899000	131770000	69599000	62169000	46252	8	43531	279912;279913;279914;279915;279916;279917	375403;375404;375405;375406;375407;375408;375409;375410	375407			8	
SLDPSRPVTFVSNSNYAADK	1	Unmodified	2167.0546	0.054561351	896	P08236	GUSB	Beta-glucuronidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			58.603	57.336	3	2.1452E-05	47872	160511_QHF_FH_JSI10i_3	87.85	53.757			0.46435	0.46427	16.39	2	2	Median	0.60028	0.52132	NaN	1	1	Median	0.35921	0.41346	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79345000	45632000	33713000	42501000	20809000	21692000	36844000	24823000	12021000	0	0	0	0	0	0	46253	896	43532	279918;279919	375411;375412;375413	375412			3	
SLDQAINDK	1	Unmodified	1002.4982	0.49818889	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	24.029	23.395	2	0.00025074	20084	160511_QHF_FH_JSI9i_1	98.048	45.332			0.6173	0.60026	9.425	3	3	Median	0.78545	0.6508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6173	0.60026	NaN	1	1	Median	0.51305	0.53932	NaN	1	1	Median	364240000	204810000	159440000	119750000	62803000	56946000	0	0	0	99051000	49870000	49181000	145440000	92134000	53308000	46254	5479	43533	279920;279921;279922	375414;375415;375416	375416			3	
SLDQDPVVR	0	Unmodified	1027.5298	0.52982336	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.8	5.78	3					3	4				3	4	3	32.063	26.274	2	3.1741E-05	23820	160511_QHF_FH_JSI12i_1	101.64	65.763			1.0215	1.1564	10.932	8	2	Median	NaN	NaN	NaN	0	0	Median	1.0233	1.2008	5.0947	3	0	Median	1.1064	1.0832	25.296	2	2	Median	1.146	1.2119	5.8779	3	0	Plateau	1223700000	560860000	662860000	0	0	0	398400000	168850000	229540000	381320000	169010000	212310000	444000000	223000000	221000000	46255	3852	43534	279923;279924;279925;279926;279927;279928;279929;279930;279931;279932	375417;375418;375419;375420;375421;375422;375423;375424;375425;375426;375427;375428;375429;375430	375418			14	
SLDSFLLSPEAAVGLLK	1	Unmodified	1758.9768	0.97675195	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	1	2	3	102.23	102.11	2;3	3.5823E-21	88019	160511_QHF_FH_JSI12i_2	207.47	172.05			0.86624	0.94693	26.447	8	5	Median	0.7937	0.68679	45.468	2	1	Median	0.76129	0.94664	NaN	1	1	Median	0.77842	0.77449	3.6604	2	1	Median	0.96738	1.0745	2.8113	3	2	Median	682690000	386370000	296320000	103250000	67835000	35412000	98680000	60846000	37833000	181050000	109340000	71711000	299720000	148350000	151360000	46256	5666	43535	279933;279934;279935;279936;279937;279938;279939;279940	375431;375432;375433;375434;375435;375436	375432			6	
SLDTHVTK	1	Unmodified	899.47125	0.47124585	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		8	2					2		2	2	4	4	11.631	10.423	2;3	0.0006356	8753	160511_QHF_FH_JSI10i_2	101.72	61.618			1.108	1.1145	19.607	11	1	Median	1.1424	0.97685	4.5266	2	0	Median	0.72681	0.89487	12.329	2	0	Median	1.238	1.247	9.1595	3	1	Median	1.0961	1.1784	19.082	4	0	Median	1394700000	683260000	711430000	212840000	103320000	109520000	407750000	213140000	194610000	465930000	202920000	263010000	308170000	163880000	144290000	46257	2509	43536	279941;279942;279943;279944;279945;279946;279947;279948;279949;279950;279951;279952	375437;375438;375439;375440;375441;375442;375443;375444;375445;375446	375445			10	
SLDTSEEGGR	0	Unmodified	1049.4625	0.46253166	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.8537	9.6723	2	7.0646E-07	7443	160511_QHF_FH_JSI10i_1	122.13	86.255			0.83139	0.88862	8.5404	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69748	0.83654	NaN	1	1	Median	0.99102	0.94393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	231990000	132830000	99160000	0	0	0	125330000	79191000	46138000	106660000	53636000	53023000	0	0	0	46258	4337	43537	279953;279954	375447;375448	375448			2	
SLDVNQDSELK	1	Unmodified	1246.6041	0.60411052	4289	Q99584	S100A13	Protein S100-A13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.72	4	1			2	3				1	4	2	3	38.566	34.356	2	6.2282E-18	30915	160511_QHF_FH_JSI11i_1	180.07	134.98			0.98561	0.90021	15.427	7	0	Median	1.0298	0.84466	NaN	1	0	Median	0.81494	0.95263	28.532	2	0	Median	1.0061	0.98168	12.252	2	0	Median	0.92813	1.0011	15.936	2	0	Median	4098500000	2018900000	2079700000	822570000	312440000	510130000	1218500000	642820000	575640000	1213800000	626940000	586900000	843690000	436670000	407020000	46259	4289	43538	279955;279956;279957;279958;279959;279960;279961;279962;279963;279964	375449;375450;375451;375452;375453;375454;375455;375456;375457;375458;375459;375460;375461;375462;375463;375464;375465;375466;375467;375468	375450			20	
SLEAASEK	1	Unmodified	833.41306	0.41306227	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	9.147	8.787	2	0.00045656	6455	160511_QHF_FH_JSI12i_2	102.51	6.6044			0.94279	0.9283	26.439	6	0	Median	1.0375	0.84872	NaN	1	0	Median	0.70618	0.85958	9.1735	2	0	Median	1.2965	1.2908	36.634	2	0	Median	0.87948	0.93956	NaN	1	0	Median	6393800000	3102700000	3291100000	1440400000	622990000	817380000	1926600000	1008600000	918020000	1604000000	735630000	868360000	1422900000	735510000	687370000	46260	2069	43539	279965;279966;279967;279968;279969;279970;279971	375469;375470;375471;375472;375473	375470			5	
SLEAASEKYSEK	2	Acetyl (K)	1382.6565	0.65654002	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.3	0.471						2	1				2		1	42.231	32.991	2	7.5965E-05	18601	160513_QHF_FH_JSI12Kac_3	101.93	83.149			8.6328	10.046	35.42	3	3	Median	NaN	NaN	NaN	0	0	Median	9.7363	11.387	17.725	2	2	Median	NaN	NaN	NaN	0	0	Median	5.8362	6.4155	NaN	1	1	Median	5351700	610120	4741600	0	0	0	3419600	289360	3130300	0	0	0	1932100	320750	1611400	46261	2069	43540	279972;279973;279974	375474;375475;375476	375475	2140		3	
SLEAEGFQVTYLPVQK	1	Unmodified	1807.9356	0.93561541	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	9	6								4	3	5	3	82.042	81.502	2;3	1.8413E-22	74301	160511_QHF_FH_JSI11i_1	182.02	159.48			0.97334	0.93641	14.369	12	6	Median	1.058	0.87948	8.6775	3	1	Median	0.77105	0.90723	18.466	2	2	Median	0.96848	0.9389	13.699	4	3	Median	1.1712	1.2203	18.53	3	0	Plateau	458830000	228650000	230180000	70082000	32258000	37824000	109420000	62084000	47335000	161430000	75476000	85957000	117890000	58832000	59062000	46262	5712	43541	279975;279976;279977;279978;279979;279980;279981;279982;279983;279984;279985;279986;279987;279988;279989	375477;375478;375479;375480;375481;375482;375483;375484;375485;375486;375487;375488;375489;375490;375491;375492;375493;375494	375479			18	
SLEAFFLYGR	0	Unmodified	1201.6132	0.61315906	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.794	77.533	2	1.0221E-07	42795	160513_QHF_FH_JSI11Kac_6	118.26	97.935			0.93309	0.93861	12.97	4	1	Median	0.89591	0.77279	NaN	1	0	Median	0.81868	0.9426	NaN	1	0	Median	0.97181	0.93464	NaN	1	1	Median	1.0166	1.0569	NaN	1	0	Median	530530000	258310000	272220000	112470000	59315000	53155000	182900000	93401000	89499000	121320000	49981000	71341000	113840000	55611000	58228000	46263	3736	43542	279990;279991;279992;279993	375495;375496;375497;375498;375499;375500	375495			6	
SLEAQADK	1	Unmodified	860.42396	0.42396131	886	P07951	TPM2	Tropomyosin beta chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	5									1	2	1	1	9.4055	9.066	2	0.0013022	6642	160511_QHF_FH_JSI11i_1	91.318	30.53			0.98604	1.0314	22.128	5	0	Median	1.2986	1.0726	NaN	1	0	Median	0.8624	1.0239	43.645	2	0	Median	0.98604	0.96786	NaN	1	0	Median	0.96955	1.0314	NaN	1	0	Median	2313000000	1141300000	1171800000	154260000	70051000	84209000	1037800000	543070000	494740000	190710000	106810000	83893000	930260000	421320000	508940000	46264	886	43543	279994;279995;279996;279997;279998	375501;375502	375501			2	
SLEAQVAHADQQLR	0	Unmodified	1564.7958	0.79576789	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.287		10	1							3	3	3	2	40.665	39.783	2;3	9.2215E-15	34017	160511_QHF_FH_JSI11i_2	183.66	158.27			1.0695	1.0963	20.715	11	5	Median	1.1988	1.0577	18.627	3	2	Median	0.79393	0.97811	12.143	3	2	Plateau	1.1183	1.1361	35.355	3	1	Median	1.0006	1.0964	1.9962	2	0	Median	1001600000	473270000	528320000	182040000	77786000	104250000	238040000	133630000	104420000	406570000	179190000	227380000	174940000	82661000	92275000	46265	2587	43544	279999;280000;280001;280002;280003;280004;280005;280006;280007;280008;280009	375503;375504;375505;375506;375507;375508;375509;375510;375511;375512;375513;375514;375515;375516;375517;375518;375519	375513			17	
SLEDALAEAQR	0	Unmodified	1201.5939	0.59388018	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	3	2	1	50.149	49.502	2	3.9824E-21	43634	160511_QHF_FH_JSI10i_2	157.66	120.97			1.103	1.0682	15.871	5	2	Median	1.1739	0.94457	NaN	1	1	Median	0.98639	1.1723	NaN	1	1	Median	1.135	1.1199	6.6917	2	0	Median	0.79215	0.80922	NaN	1	0	Median	828700000	376620000	452080000	178570000	80842000	97731000	179260000	79511000	99753000	342480000	151540000	190950000	128380000	64733000	63651000	46266	679	43545	280010;280011;280012;280013;280014;280015;280016;280017	375520;375521;375522;375523;375524;375525;375526;375527;375528;375529	375529			10	
SLEDALR	0	Unmodified	802.41848	0.418482	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	32.172	31.408	2	0.0016788	28315	160511_QHF_FH_JSI12i_1	117.93	25.241			1.0692	0.99321	12.407	8	1	Median	1.0851	0.90665	0.13976	2	0	Median	0.83074	0.99321	0.9191	2	0	Median	1.1999	1.1776	7.4371	2	0	Median	0.92199	1.0019	17.674	2	1	Median	1256100000	649570000	606570000	227780000	110640000	117140000	371910000	212850000	159060000	404610000	198350000	206250000	251850000	127730000	124110000	46267	2780	43546	280018;280019;280020;280021;280022;280023;280024;280025	375530;375531;375532;375533;375534;375535;375536;375537;375538;375539;375540	375532			11	
SLEDALSSDTSGHFR	0	Unmodified	1620.738	0.73797824	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	50.803	50.11	2;3	5.8605E-15	44262	160511_QHF_FH_JSI11i_3	195.25	177.44			0.87484	0.89124	6.708	12	0	Median	1.0803	0.92056	9.5689	2	0	Median	0.75563	0.92079	0.22811	2	0	Median	0.87484	0.84855	4.1313	4	0	Median	0.86372	0.92212	8.3706	4	0	Median	1783500000	916920000	866570000	236090000	123960000	112120000	279460000	155430000	124030000	681420000	330190000	351240000	586520000	307340000	279180000	46268	891	43547	280026;280027;280028;280029;280030;280031;280032;280033;280034;280035;280036;280037	375541;375542;375543;375544;375545;375546;375547;375548;375549;375550;375551;375552;375553;375554;375555;375556;375557;375558;375559;375560;375561;375562	375543			22	
SLEDALSSDTSGHFRR	0	Unmodified	1776.8391	0.83908927	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				44.911	43.311	3;4	0.00079848	35405	160511_QHF_FH_JSI9i_3	53.777	46.369			1.2697	1.0366	3.2239	2	0	Median	1.2697	1.0366	3.2239	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106140000	42198000	63940000	106140000	42198000	63940000	0	0	0	0	0	0	0	0	0	46269	891	43548	280038;280039	375563;375564	375563			2	
SLEDDIR	0	Unmodified	846.40831	0.40831125	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.008	24.449	2	0.017817	21364	160511_QHF_FH_JSI11i_1	60.895	5.4543			0.90573	0.93331	10.795	4	0	Median	1.2658	1.0824	NaN	1	0	Median	0.7662	0.89154	NaN	1	0	Median	0.88546	0.84687	NaN	1	0	Median	0.92645	0.97704	NaN	1	0	Median	215330000	116170000	99163000	36911000	15452000	21460000	69194000	40703000	28491000	47418000	27204000	20215000	61807000	32810000	28998000	46270	932	43549	280040;280041;280042;280043	375565;375566	375565			2	
SLEDDIRSDTSFMFQR	0	Unmodified	1945.884	0.88399055	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	83.562	83.371	3	0.031237	72378	160511_QHF_FH_JSI12i_3	32.995	23.711			1.3038	1.3451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3038	1.3451	NaN	1	0	Median	23924000	13261000	10662000	0	0	0	0	0	0	0	0	0	23924000	13261000	10662000	46271	932	43550	280044	375567	375567			1	
SLEDLIFESLPENASHK	1	Unmodified	1927.9527	0.95272204	667	O95260	ATE1	Arginyl-tRNA--protein transferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	98.32	98.061	3	7.9459E-05	84351	160511_QHF_FH_JSI12i_2	67.605	61.483			0.77868	0.80732	6.9839	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81237	0.76842	NaN	1	0	Median	0.7464	0.84819	NaN	1	0	Median	27185000	13881000	13303000	0	0	0	0	0	0	16782000	6997500	9784000	10403000	6883700	3519500	46272	667	43551	280045;280046	375568;375569	375568			2	
SLEDLQDEYDFK	1	Unmodified	1500.662	0.66201933	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	66.796	66.172	2	4.4252E-53	60097	160511_QHF_FH_JSI11i_1	215.5	197.44			1.0229	1.0005	20.36	7	6	Median	1.1037	0.91193	20.266	2	2	Median	0.95838	1.1448	25.916	2	2	Median	1.0229	1.0005	NaN	1	0	Median	1.1249	1.1468	26.072	2	2	Median	584460000	280920000	303530000	180590000	85694000	94900000	153240000	72053000	81185000	85161000	41222000	43938000	165460000	81952000	83510000	46273	1528	43552	280047;280048;280049;280050;280051;280052;280053	375570;375571;375572;375573;375574;375575;375576	375570			7	
SLEDQVEMLR	0	Unmodified	1218.5914	0.59143734	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			3	3	1	2	58.478	56.398	2	2.6215E-19	50947	160511_QHF_FH_JSI10i_1	179.8	134.72			1.0645	1.056	67.008	8	4	Median	1.6115	1.3278	45.731	2	1	Median	0.97322	1.1355	68.155	3	2	Median	0.94807	0.98206	NaN	1	0	Median	1.8031	1.9413	128.99	2	1	Median	7114400000	1991700000	5122700000	1638500000	479160000	1159400000	2198000000	606770000	1591200000	630710000	306000000	324710000	2647200000	599740000	2047500000	46274	1050	43553	280054;280055;280056;280057;280058;280059;280060;280061;280062	375577;375578;375579;375580;375581;375582;375583;375584;375585;375586;375587;375588;375589;375590	375583			14	
SLEDTKNR	1	Acetyl (K)	1003.4934	0.49343786	62	CON__P35527;P35527	KRT9	Keratin, type I cytoskeletal 9	yes	no	1	0	0	1		By MS/MS			13	0						1					1			17.155	9.7358	2	0.0049411	6984	160513_QHF_FH_JSI10Kac_3	86.794	60.9		+	0.30349	0.35767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.30349	0.35767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3628600	2719300	909310	0	0	0	3628600	2719300	909310	0	0	0	0	0	0	46275	62	43554	280063	375591	375591	42		1	
SLEDVTAEYIHK	1	Unmodified	1403.6933	0.69325988	5183	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	57.527	56.611	3	2.8772E-05	48517	160511_QHF_FH_JSI12i_2	67.252	60.554			0.81713	0.83427	7.3311	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68607	0.83427	NaN	1	0	Median	0.81713	0.82205	NaN	1	0	Median	0.86118	0.93966	NaN	1	0	Median	116160000	64397000	51761000	0	0	0	36278000	19093000	17186000	40650000	23789000	16861000	39229000	21515000	17714000	46276	5183	43555	280064;280065;280066	375592;375593	375593			2	
SLEDVVR	0	Unmodified	816.43413	0.43413207	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	31.877	30.583	2	0.0087592	26008	160511_QHF_FH_JSI11i_2	71.296	21.937			0.43206	0.41768	33.884	2	2	Median	0.64104	0.53076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2912	0.32869	NaN	1	1	Median	952930000	773700000	179240000	194970000	147990000	46978000	0	0	0	0	0	0	757960000	625700000	132260000	46277	2502	43556	280067;280068;280069	375594;375595;375596	375596			3	
SLEEAQEWLK	1	Unmodified	1231.6085	0.60846762	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	63.611	62.993	2	0.00019572	54804	160511_QHF_FH_JSI11i_2	82.029	51.953			0.91572	0.9827	17.927	4	2	Linear	0.99957	0.86383	NaN	1	0	Median	1.108	1.2593	NaN	1	1	Median	0.89353	0.88519	NaN	1	0	Median	1.043	1.091	NaN	1	1	Median	107860000	47469000	60387000	27113000	13077000	14037000	24078000	11343000	12735000	32893000	12245000	20648000	23772000	10804000	12968000	46278	4995	43557	280070;280071;280072;280073;280074	375597;375598;375599;375600;375601	375601			4	
SLEEDQEPIVSHQK	1	Unmodified	1637.7897	0.78967946	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	28.03	26.741	3	0.0041633	22452	160511_QHF_FH_JSI12i_2	50.155	36.742			0.81107	0.86689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81107	0.86689	NaN	1	1	Median	7734600	5080900	2653700	0	0	0	0	0	0	0	0	0	7734600	5080900	2653700	46279	2520	43558	280075	375602	375602			1	
SLEEGEGPIAVIMTPTR	0	Unmodified	1798.9135	0.91349976	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.722	6	5	2							2	2	2	7	83.536	82.904	2	1.1334E-183	73180	160511_QHF_FH_JSI9i_2	319.89	296.14			1.0204	1.1151	4.2652	8	2	Median	1.4215	1.2098	NaN	1	0	Median	0.94628	1.1451	3.1592	2	0	Median	1.1347	1.1088	3.4776	2	0	Median	0.99398	1.1033	2.0149	3	2	Plateau	523190000	242880000	280310000	83190000	27382000	55808000	120870000	62740000	58128000	159940000	76259000	83679000	159200000	76501000	82696000	46280	3216	43559	280076;280077;280078;280079;280080;280081;280082;280083;280084;280085;280086;280087;280088	375603;375604;375605;375606;375607;375608;375609;375610;375611;375612;375613;375614;375615;375616;375617;375618;375619;375620;375621;375622;375623;375624	375617			22	
SLEEIYLFSLPIK	1	Unmodified	1550.8596	0.85959692	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.57	3	5	7						8	6	5	6	6	99.699	96.726	2;3	2.3009E-128	46977	160513_QHF_FH_JSI12Kac_6	278.83	209.41			0.91756	0.94455	12.01	23	0	Median	1.2187	1.0253	9.6859	6	0	Median	0.8398	0.99961	11.148	5	0	Median	0.95388	0.94022	10.552	6	0	Median	0.85585	0.88873	14.22	6	0	Median	17221000000	8844300000	8377100000	5239700000	2379500000	2860200000	3759200000	2104600000	1654600000	3974400000	2032800000	1941600000	4248100000	2327400000	1920800000	46281	1084	43560	280089;280090;280091;280092;280093;280094;280095;280096;280097;280098;280099;280100;280101;280102;280103;280104;280105;280106;280107;280108;280109;280110;280111	375625;375626;375627;375628;375629;375630;375631;375632;375633;375634;375635;375636;375637;375638;375639;375640;375641;375642;375643;375644;375645;375646;375647;375648;375649;375650;375651;375652;375653;375654;375655;375656;375657;375658;375659;375660;375661	375655			37	
SLEELLLDANQLR	0	Unmodified	1512.8148	0.814772	2506;4421	Q14160;Q9BTT6	SCRIB;LRRC1	Protein scribble homolog;Leucine-rich repeat-containing protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	100.33	100.19	3	6.9878E-05	86199	160511_QHF_FH_JSI12i_2	61.375	51.323			0.78276	0.86302	37.153	3	1	Median	NaN	NaN	NaN	0	0	Median	0.428	0.50081	NaN	1	1	Median	1.0382	1.0189	NaN	1	0	Median	0.78276	0.86302	NaN	1	0	Median	29674000	16677000	12998000	0	0	0	6039900	4150500	1889400	11555000	4962400	6592200	12080000	7563700	4516200	46282	2506;4421	43561	280112;280113;280114;280115;280116	375662;375663;375664;375665;375666;375667;375668	375663			7	
SLEELPVDIILASVG	0	Unmodified	1553.8552	0.85523983	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.831	4	3	3							2	3	2	3	103.79	103.71	2	2.1465E-05	94507	160511_QHF_FH_JSI10i_1	123.86	113.11			0.89042	0.94945	28.456	10	1	Median	1.6559	1.4266	37.084	2	0	Median	0.71906	0.84344	22.068	3	0	Plateau	0.86471	0.82438	10.731	2	0	Median	0.84542	0.89233	29.648	3	1	Median	629550000	337410000	292140000	43106000	18229000	24876000	285360000	158510000	126860000	117170000	65224000	51948000	183910000	95452000	88459000	46283	5708	43562	280117;280118;280119;280120;280121;280122;280123;280124;280125;280126	375669;375670;375671;375672;375673;375674;375675;375676;375677;375678;375679;375680	375675			12	
SLEELQIGTYANIAMVR	0	Unmodified	1906.9822	0.98224803	1825	P54619	PRKAG1	5'-AMP-activated protein kinase subunit gamma-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.446	95.112	2	0.018898	83513	160511_QHF_FH_JSI11i_2	54.776	31.171			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46284	1825	43563	280127	375681	375681			1	
SLEENLATAK	1	Unmodified	1074.5557	0.55570376	4912	Q9NQ48	LZTFL1	Leucine zipper transcription factor-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	31.478	31.193	2	0.010556	27907	160511_QHF_FH_JSI11i_1	57.347	14.749			0.98907	1.0476	30.402	2	1	Median	NaN	NaN	NaN	0	0	Median	1.089	1.2988	NaN	1	0	Median	0.89835	0.84493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	119260000	61328000	57934000	0	0	0	54895000	30297000	24598000	64367000	31031000	33336000	0	0	0	46285	4912	43564	280128;280129;280130	375682;375683;375684	375682			3	
SLEERENAGVDPTLAIPMIQK	1	Unmodified	2310.1889	0.18894634	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	78.534	77.826	3	6.9288E-08	68603	160511_QHF_FH_JSI9i_2	94.856	83.713			1.0576	1.0105	10.989	5	0	Median	1.132	0.97979	NaN	1	0	Median	0.82571	1.0105	NaN	1	0	Median	0.94314	0.93345	NaN	1	0	Median	1.0762	1.1796	3.3576	2	0	Median	298760000	149240000	149520000	58428000	26867000	31561000	72417000	41578000	30838000	65749000	34368000	31381000	102170000	46428000	55740000	46286	3906	43565	280131;280132;280133;280134;280135;280136	375685;375686;375687;375688;375689;375690;375691;375692;375693	375687			9	
SLEGADLPNLLFYGPPGTGK	1	Unmodified	2045.047	0.046956778	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.25	101.22	2	6.793E-25	91923	160511_QHF_FH_JSI10i_1	218.78	197.48			0.62505	0.72084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62505	0.72084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85169000	48025000	37144000	0	0	0	85169000	48025000	37144000	0	0	0	0	0	0	46287	1428	43566	280137	375694	375694			1	
SLEGDLEDLK	1	Unmodified	1117.5503	0.55028404	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	64.33	62.3	2	6.862E-11	56827	160511_QHF_FH_JSI12i_1	144.77	94.73			0.90438	0.96277	15.005	8	1	Median	1.0069	0.83967	20.288	2	1	Median	0.80463	0.95638	13.702	3	0	Median	1.1226	1.0806	NaN	1	0	Median	0.91819	1.0022	15.672	2	0	Median	2227400000	1153900000	1073500000	537420000	266460000	270960000	666800000	382400000	284410000	502680000	220630000	282050000	520510000	284420000	236090000	46288	1180	43567	280138;280139;280140;280141;280142;280143;280144;280145;280146	375695;375696;375697;375698;375699;375700;375701;375702;375703;375704;375705;375706;375707	375699			13	
SLEGGGAGPVDYHLLMMFTK	1	Unmodified	2122.0227	0.022732637	3591	Q8NBI6	XXYLT1	Xyloside xylosyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	90.919	81.746	3	4.6384E-26	45835	160513_QHF_FH_JSI11Kac_6	155.87	120.96			0.98719	0.94231	12.573	3	1	Median	1.324	1.1279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98719	0.94231	NaN	1	0	Median	0.8358	0.8853	NaN	1	0	Median	228770000	109380000	119400000	61376000	23837000	37539000	0	0	0	128080000	66436000	61644000	39319000	19106000	20212000	46289	3591	43568	280147;280148;280149	375708;375709;375710	375708			3	
SLEGTEAQVFK	1	Unmodified	1207.6085	0.60846762	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	46.479	45.866	2	8.4622E-05	41362	160511_QHF_FH_JSI11i_1	100.02	55.57			0.9576	0.99471	50.3	4	4	Linear	NaN	NaN	NaN	0	0	Median	1.6321	1.9591	77.932	2	2	Median	1.2599	1.2297	NaN	1	1	Median	1.475	1.522	NaN	1	1	Median	385890000	165350000	220540000	0	0	0	187000000	84592000	102400000	109790000	41659000	68130000	89106000	39096000	50010000	46290	2344	43569	280150;280151;280152;280153;280154;280155	375711;375712;375713;375714;375715;375716	375711			6	
SLEIEEK	1	Unmodified	846.43346	0.43346336	2052;3018	P63151;Q00005;Q9Y2T4;Q66LE6	PPP2R2A;PPP2R2B;PPP2R2C;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	23.531	22.901	2	0.01035	19539	160511_QHF_FH_JSI9i_1	75.213	16.295			1.1799	1.1404	29.042	3	1	Median	1.5094	1.2464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1799	1.1404	NaN	1	0	Median	0.67812	0.72523	NaN	1	1	Median	646630000	334230000	312400000	168310000	81683000	86625000	0	0	0	216240000	109820000	106420000	262090000	142730000	119350000	46291	2052;3018	43570	280156;280157;280158	375717;375718;375719;375720	375720			4	
SLELLPIILTALATK	1	Unmodified	1594.9909	0.99094545	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	4	1	1	104.14	104.06	2;3	3.1691E-12	93020	160511_QHF_FH_JSI11i_3	109.84	102.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46292	5034	43571	280159;280160;280161;280162;280163;280164;280165;280166	375721;375722;375723;375724;375725;375726;375727;375728	375721			8	
SLELMLK	1	Oxidation (M)	848.46774	0.46774038	5804				yes	yes	0	0	1	0	By MS/MS			By MS/MS	2	0		2								1			1	37.754	36.555	2	0.019424	31123	160511_QHF_FH_JSI12i_2	74.415	9.6119	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46293	5804	43572	280167;280168	375729;375730	375729		2752	2	
SLELNPNNSTAMLR	0	Unmodified	1558.7773	0.77734063	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		61.243	60.466	2	3.4686E-06	52656	160511_QHF_FH_JSI11i_2	128.88	92.546			1.0259	0.9754	12.442	3	3	Plateau	1.2289	1.06	NaN	1	1	Median	1.0259	1.2458	NaN	1	1	Median	0.96749	0.9754	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189820000	98872000	90944000	58887000	30366000	28521000	50992000	25688000	25304000	79938000	42819000	37119000	0	0	0	46294	5548	43573	280169;280170;280171	375731;375732;375733	375732			3	
SLELNPNNSTAMLRK	1	Unmodified	1686.8723	0.87230365	5548	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		52.822	51.799	3	2.5197E-05	42329	160511_QHF_FH_JSI9i_3	103.21	77.089			1.0852	1.0926	13.212	5	1	Median	1.3179	1.0971	1.3655	2	0	Median	1.0241	1.1911	12.211	2	1	Median	0.94521	0.89489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	442780000	203500000	239270000	168200000	70261000	97937000	194430000	98576000	95855000	80147000	34667000	45480000	0	0	0	46295	5548	43574	280172;280173;280174;280175;280176	375734;375735;375736;375737;375738;375739;375740;375741	375737			8	
SLENAIEWSVK	1	Unmodified	1274.6507	0.65066678	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	68.576	67.743	2	3.6288E-13	58370	160511_QHF_FH_JSI12i_2	149.23	109.19			1.1447	1.126	58.953	5	3	Median	1.3315	1.126	NaN	1	0	Median	2.9006	3.6092	NaN	1	1	Median	0.95951	0.96991	25.837	2	2	Median	0.87057	0.96549	NaN	1	0	Median	686320000	324630000	361690000	76003000	47140000	28862000	213270000	59939000	153330000	256320000	150120000	106200000	140720000	67429000	73289000	46296	5650	43575	280177;280178;280179;280180;280181	375742;375743;375744;375745;375746;375747;375748	375743			7	
SLENETLNK	1	Unmodified	1046.5244	0.52440364	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.24	5					3	3			2	3	3	3	25.788	20.911	2	9.0122E-12	17997	160511_QHF_FH_JSI10i_1	166.16	84.865			1.0476	1.142	52.881	11	5	Median	1.7578	1.4346	158.61	2	2	Median	1.0476	1.2364	14.57	3	1	Median	1.0389	1.0098	8.4719	3	1	Median	0.84736	0.89759	16.479	3	1	Plateau	2933400000	1180300000	1753100000	874840000	316330000	558500000	527720000	228150000	299570000	738890000	300540000	438350000	791980000	335260000	456720000	46297	1237	43576	280182;280183;280184;280185;280186;280187;280188;280189;280190;280191;280192	375749;375750;375751;375752;375753;375754;375755;375756;375757;375758;375759;375760;375761;375762;375763;375764	375754			16	
SLENYHFVDEHGK	1	Unmodified	1573.7161	0.71612058	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	32.979	32.815	3;4	0.0039977	28287	160511_QHF_FH_JSI11i_3	50.088	37.728			1.34	1.3337	48.512	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0396	0.98268	63.915	2	2	Median	1.34	1.3337	NaN	1	0	Median	160030000	76492000	83536000	0	0	0	0	0	0	82711000	40964000	41747000	77318000	35528000	41790000	46298	2558	43577	280193;280194;280195	375765;375766;375767	375765			3	
SLEPDTFQGLER	0	Unmodified	1390.6729	0.67285879	3327	Q86UN3	RTN4RL2	Reticulon-4 receptor-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	4	1	57.865	57.182	2	2.8586E-05	50178	160511_QHF_FH_JSI9i_2	107.83	78.744			0.7867	0.81771	18.652	8	5	Median	1.1087	1.0012	NaN	1	0	Median	0.65388	0.79229	36.379	2	1	Median	0.76804	0.76626	11.287	4	4	Median	0.7702	0.86925	NaN	1	0	Median	402930000	227740000	175190000	47810000	23885000	23926000	97990000	61408000	36583000	206760000	119170000	87585000	50375000	23280000	27095000	46299	3327	43578	280196;280197;280198;280199;280200;280201;280202;280203	375768;375769;375770;375771;375772;375773;375774;375775;375776;375777	375773			10	
SLEPGTPR	0	Unmodified	855.44503	0.4450311	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14	0							2					1	1	21.229	13.628	2	0.0070359	9374	160513_QHF_FH_JSI11Kac_4	65.313	31.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46300	1739	43579	280204;280205	375778;375779	375778			2	
SLEPMAGQLSNSVATK	1	Unmodified	1631.8189	0.8188711	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	1	2	3	55.825	54.985	2	1.4295E-16	48164	160511_QHF_FH_JSI9i_2	118.37	93.575			0.86597	0.85647	35.183	7	5	Median	0.55333	0.45809	NaN	1	1	Median	0.71567	0.83772	NaN	1	1	Median	0.94004	0.92642	11.102	2	0	Median	0.86597	0.89125	37.499	3	3	Median	237970000	125040000	112930000	36131000	18915000	17216000	42425000	27633000	14793000	90160000	45485000	44676000	69251000	33006000	36245000	46301	3100	43580	280206;280207;280208;280209;280210;280211;280212;280213	375780;375781;375782;375783;375784;375785;375786;375787;375788	375786			9	
SLEQEEETQPGR	0	Acetyl (Protein N-term)	1443.6478	0.64776625	3104	Q6P4A7	SFXN4	Sideroflexin-4	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	31.231	30.659	2	1.0991E-10	27580	160511_QHF_FH_JSI12i_1	126.71	118.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46302	3104	43581	280214	375789	375789			1	
SLEQLQK	1	Unmodified	844.46543	0.46543219	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.99	20.667	2	0.0068704	17017	160511_QHF_FH_JSI11i_2	77.741	34.826			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46303	2587	43582	280215	375790	375790			1	
SLEQNIQLPAALLSR	0	Unmodified	1651.9257	0.92571943	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.386	2	9								3	4	2	2	90.613	90.163	2;3	2.8244E-52	77869	160511_QHF_FH_JSI12i_2	222.73	182.88			0.88885	0.90609	22.097	11	3	Median	1.2664	1.0809	23.807	3	2	Plateau	0.6778	0.84016	19.582	4	1	Linear	0.92843	0.92858	3.4682	2	0	Median	0.91738	1.016	6.2351	2	0	Median	703710000	368110000	335600000	202720000	89673000	113050000	195180000	116200000	78972000	151690000	80458000	71232000	154120000	81774000	72346000	46304	1411	43583	280216;280217;280218;280219;280220;280221;280222;280223;280224;280225;280226	375791;375792;375793;375794;375795;375796;375797;375798;375799;375800;375801;375802;375803;375804;375805;375806;375807;375808;375809;375810	375792			20	
SLESALK	1	Unmodified	746.41742	0.41741937	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	22.629	22.624	2	0.052111	19091	160511_QHF_FH_JSI11i_3	42.474	0.24572			1.0405	1.022	46.597	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5289	1.4208	NaN	1	0	Median	0.70808	0.7351	NaN	1	0	Median	226840000	101430000	125410000	0	0	0	0	0	0	111460000	46290000	65174000	115380000	55144000	60233000	46305	255	43584	280227;280228	375811	375811			1	
SLESINSR	0	Unmodified	904.46141	0.46140945	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.16	4	4	4				4	4		5	5	5	5	18.654	14.681	2	5.6041E-10	13777	160511_QHF_FH_JSI9i_2	163.77	79.974			1.0256	1.0245	9.4343	20	0	Median	1.3047	1.0615	8.424	5	0	Median	0.85816	1.0297	11.169	5	0	Median	1.0016	1.0025	5.0999	5	0	Median	1.0202	1.0631	12.841	5	0	Median	11673000000	5732700000	5939800000	2314400000	870660000	1443800000	2661000000	1376300000	1284700000	3921000000	1940000000	1981000000	2776200000	1545800000	1230400000	46306	2033	43585	280229;280230;280231;280232;280233;280234;280235;280236;280237;280238;280239;280240;280241;280242;280243;280244;280245;280246;280247;280248	375812;375813;375814;375815;375816;375817;375818;375819;375820;375821;375822;375823;375824;375825;375826;375827;375828;375829;375830;375831;375832;375833;375834;375835;375836;375837;375838;375839	375829			28	
SLESIVK	1	Unmodified	774.44872	0.4487195	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.988	34.565	2	0.049673	29441	160511_QHF_FH_JSI11i_2	47.743	6.4407			0.76205	0.7506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76205	0.7506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47263000	25884000	21380000	0	0	0	0	0	0	47263000	25884000	21380000	0	0	0	46307	2977	43586	280249	375840	375840			1	
SLESLDTSLFAK	1	Unmodified	1309.6765	0.67654718	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							3	3	2	2	77.964	77.229	2	1.1406E-31	67764	160511_QHF_FH_JSI11i_2	193.52	161.59			0.88727	0.96899	16.227	10	2	Median	1.1432	0.97014	24.416	3	0	Median	0.75325	0.93243	12.899	3	2	Plateau	0.92087	0.91586	10.08	2	0	Median	0.85505	0.91896	16.184	2	0	Median	1290900000	636040000	654840000	209700000	93493000	116200000	456930000	239080000	217840000	295460000	150610000	144850000	328790000	152860000	175930000	46308	2319	43587	280250;280251;280252;280253;280254;280255;280256;280257;280258;280259	375841;375842;375843;375844;375845;375846;375847;375848;375849;375850;375851;375852;375853;375854	375851			14	
SLESLHSFVAAATK	1	Unmodified	1459.7671	0.76709352	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	67.03	66.31	2;3	1.0832E-09	55775	160511_QHF_FH_JSI10i_3	145.31	127.04			0.82637	0.91265	36.603	7	4	Median	0.74339	0.60641	NaN	1	0	Median	0.84308	0.952	5.9697	2	0	Median	1.0825	1.0117	71.021	2	2	Median	0.77647	0.79053	29.361	2	2	Median	923340000	503140000	420210000	62454000	42521000	19933000	145440000	97960000	47481000	373170000	180060000	193110000	342280000	182590000	159680000	46309	2636	43588	280260;280261;280262;280263;280264;280265;280266	375855;375856;375857;375858;375859;375860;375861;375862	375859			7	
SLESNPEQLQAMR	0	Unmodified	1501.7195	0.7194914	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	2	1	44.933	44.037	2	1.0731E-10	38018	160511_QHF_FH_JSI11i_2	115.78	78.06			0.96555	1.1215	13.537	5	4	Median	1.1453	0.97033	21.679	2	1	Median	0.96555	1.1574	NaN	1	1	Median	1.1397	1.1215	NaN	1	1	Median	0.95371	1.0581	NaN	1	1	Median	318770000	143580000	175190000	109620000	45691000	63928000	82104000	34163000	47942000	115220000	57484000	57731000	11834000	6240600	5593400	46310	4856	43589	280267;280268;280269;280270;280271;280272	375863;375864;375865;375866;375867;375868;375869	375869			7	
SLESQVENLQK	1	Unmodified	1273.6514	0.65139506	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	1		2	44.493	43.48	2	1.2342E-09	38262	160511_QHF_FH_JSI10i_2	135.43	96.407			1.0756	1.1934	23.876	4	1	Median	1.0085	0.85945	NaN	1	0	Median	0.96178	1.1858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2401	1.3594	17.511	2	1	Median	359190000	178830000	180360000	60179000	31260000	28918000	47204000	27817000	19387000	0	0	0	251800000	119750000	132050000	46311	1016	43590	280273;280274;280275;280276	375870;375871;375872;375873;375874	375874			5	
SLESSQTDLK	1	Unmodified	1106.5455	0.54553301	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		19.973	19.458	2	2.5358E-07	16476	160511_QHF_FH_JSI9i_1	114.4	87.612			1.2102	0.99973	20.124	3	2	Plateau	1.2102	0.99973	NaN	1	0	Median	0.60484	0.72011	NaN	1	1	Median	1.0649	1.0383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154950000	75690000	79255000	57993000	25362000	32632000	43683000	23781000	19901000	53269000	26547000	26722000	0	0	0	46312	752	43591	280277;280278;280279	375875;375876;375877	375877			3	
SLESTTLTEK	1	Unmodified	1107.5659	0.5659341	2733	Q16527	CSRP2	Cysteine and glycine-rich protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.5	6.5	1						1					1	1	32.495	27.492	2	0.0055465	16856	160513_QHF_FH_JSI11Kac_4	61.65	29.715			1.0187	1.0391	32.317	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3361	1.3058	NaN	1	0	Median	0.77666	0.8268	NaN	1	1	Median	97506000	54952000	42554000	0	0	0	0	0	0	6066700	2603000	3463700	91440000	52349000	39090000	46313	2733	43592	280280;280281	375878;375879;375880	375880			3	
SLETEHK	1	Unmodified	842.4134	0.41339662	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.27	1	8	1				5	5		3	5	7	5	5.2361	1.0223	2;3	0.00046262	1591	160513_QHF_FH_JSI9Kac_5	97.798	66.509			1.1595	1.1868	21.64	18	3	Median	1.5383	1.3071	23.249	3	0	Median	0.90145	1.0933	11.98	5	1	Median	1.3286	1.3199	15.962	6	1	Median	1.1668	1.2828	34.416	4	1	Median	5917400000	2767800000	3149600000	962070000	380140000	581930000	936180000	529500000	406680000	2497300000	1132900000	1364400000	1521800000	725290000	796520000	46314	816	43593	280282;280283;280284;280285;280286;280287;280288;280289;280290;280291;280292;280293;280294;280295;280296;280297;280298;280299;280300;280301	375881;375882;375883;375884;375885;375886;375887;375888;375889;375890;375891;375892;375893;375894;375895;375896;375897;375898;375899	375884			19	
SLETENAGLR	0	Unmodified	1088.5462	0.54620171	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.61	4	4	5			3	3	1		3	5	5	7	26.641	23.095	2	8.289E-26	20334	160511_QHF_FH_JSI10i_1	192.92	145.85			1.0363	1.074	13.413	20	2	Median	1.3043	1.0349	8.7519	3	0	Median	0.93608	1.1229	13.395	5	0	Median	1.0379	1.0744	8.4224	5	0	Median	1.0098	1.0661	18.092	7	2	Median	8154300000	4101300000	4053000000	1688500000	770480000	917970000	1765600000	870630000	894980000	2624800000	1432200000	1192600000	2075400000	1028000000	1047400000	46315	791	43594	280302;280303;280304;280305;280306;280307;280308;280309;280310;280311;280312;280313;280314;280315;280316;280317;280318;280319;280320;280321	375900;375901;375902;375903;375904;375905;375906;375907;375908;375909;375910;375911;375912;375913;375914;375915;375916;375917;375918;375919;375920;375921;375922;375923;375924;375925;375926;375927;375928;375929;375930;375931;375932;375933;375934	375913			35	
SLETENR	0	Unmodified	847.40356	0.40356022	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.05	4	2	2			3	4	1		4	5	3	4	7.0308	3.0863	2	2.3488E-24	2723	160513_QHF_FH_JSI12Kac_3	180.7	141.49			0.94596	0.91074	8.6471	15	2	Median	1.061	0.90187	6.7531	4	0	Median	0.72847	0.88147	6.4267	4	1	Median	0.99466	0.98546	6.1513	3	1	Median	0.88965	0.97367	12.202	4	0	Median	15623000000	7791600000	7831900000	2877400000	1398200000	1479200000	4395300000	2320800000	2074500000	3926100000	1959400000	1966700000	4424700000	2113100000	2311600000	46316	842	43595	280322;280323;280324;280325;280326;280327;280328;280329;280330;280331;280332;280333;280334;280335;280336;280337	375935;375936;375937;375938;375939;375940;375941;375942;375943;375944;375945;375946;375947;375948;375949;375950;375951;375952;375953;375954;375955;375956;375957	375950			23	
SLETENRR	0	Unmodified	1003.5047	0.50467125	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	3	1		5.3639	4.9738	2;3	2.8106E-06	2876	160511_QHF_FH_JSI9i_2	141.93	79.213			0.98442	1.0053	17.657	5	1	Median	1.1826	1.0053	NaN	1	0	Median	0.7389	0.90546	13.274	3	1	Plateau	0.7479	0.74723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1178900000	593590000	585310000	307670000	127430000	180240000	751210000	391930000	359280000	120020000	74230000	45788000	0	0	0	46317	842	43596	280338;280339;280340;280341;280342	375958;375959;375960;375961;375962;375963;375964;375965;375966	375961			9	
SLETENSALQLQVTER	0	Unmodified	1816.9167	0.91667089	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.105	58.612	2	6.8578E-07	52909	160511_QHF_FH_JSI10i_1	124.51	83.926			0.4289	0.41124	43.149	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.82239	0.9478	NaN	1	1	Median	0.4289	0.41124	NaN	1	1	Median	0.52092	0.51687	NaN	1	1	Median	55599000	43187000	12412000	0	0	0	14202000	10731000	3470600	25657000	20330000	5326600	15741000	12126000	3614500	46318	1180	43597	280343;280344;280345	375967;375968;375969	375969			3	
SLETENSALQLQVTEREEVR	0	Unmodified	2330.1714	0.17138202	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.113	57.45	3	4.0415E-12	50337	160511_QHF_FH_JSI9i_2	140.16	122.58			1.0287	1.0399	13.334	6	0	Median	1.4429	1.2436	NaN	1	0	Median	0.74602	0.91933	NaN	1	0	Median	1.1976	1.164	11.419	2	0	Median	0.91088	0.98189	3.5772	2	0	Median	734890000	356300000	378590000	135670000	56387000	79281000	164010000	89661000	74347000	249830000	115050000	134780000	185380000	95198000	90182000	46319	1180	43598	280346;280347;280348;280349;280350;280351	375970;375971;375972;375973;375974;375975;375976;375977;375978;375979;375980;375981;375982;375983;375984	375975			15	
SLETSLVPLSDPK	1	Unmodified	1384.745	0.7449611	1739	P51570	GALK1	Galactokinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.167	67.554	3	0.0030656	61530	160511_QHF_FH_JSI12i_1	33.589	27.008			1.0827	1.0725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0827	1.0725	NaN	1	0	Median	13003000	4559500	8443500	0	0	0	0	0	0	0	0	0	13003000	4559500	8443500	46320	1739	43599	280352	375985	375985			1	
SLETVYLER	0	Unmodified	1108.5764	0.57643921	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.3	4.64		1					3	2			1	2	3	47.173	36.92	2	0.006863	19470	160513_QHF_FH_JSI10Kac_4	61.962	18.716			0.92732	1.0276	21.314	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78228	0.93227	NaN	1	0	Median	0.98127	0.95859	10.859	2	0	Median	1.136	1.2518	27.91	2	0	Median	66221000	32859000	33362000	0	0	0	22217000	12004000	10213000	14141000	7327900	6812600	29863000	13526000	16337000	46321	2673	43600	280353;280354;280355;280356;280357;280358	375986;375987;375988;375989	375987			4	
SLEYCSTASIDSENPPDLNK	1	Unmodified	2238.9951	0.99505714	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				58.907	57.786	2	2.0073E-05	51324	160511_QHF_FH_JSI9i_1	77.527	69.802			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46322	2094	43601	280359	375990	375990			1	
SLFDLHK	1	Unmodified	858.45995	0.45995289	5770				yes	yes	0	0	0	0			By MS/MS		3	0			1									1		36.239	36.239	3	0.0041914	31599	160511_QHF_FH_JSI11i_3	60.972	0	+		1.3505	1.2678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3505	1.2678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	328760000	146140000	182620000	0	0	0	0	0	0	328760000	146140000	182620000	0	0	0	46323	5770	43602	280360	375991	375991			1	
SLFEASQQLLNEMK	1	Unmodified	1636.8131	0.81305744	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4								3	3	3	96.255	96.107	2;3	8.6317E-30	83160	160511_QHF_FH_JSI12i_3	188.06	162.67			1.5853	1.5311	57.888	9	6	Median	NaN	NaN	NaN	0	0	Median	0.79048	0.9829	60.001	3	3	Median	1.7036	1.5311	42.541	3	1	Median	0.93973	1.012	64.468	3	2	Plateau	247870000	121630000	126240000	0	0	0	35882000	23207000	12675000	70150000	31601000	38549000	141840000	66827000	75016000	46324	28	43603	280361;280362;280363;280364;280365;280366;280367;280368;280369	375992;375993;375994;375995;375996;375997;375998;375999;376000;376001;376002;376003	376001			12	
SLFEQVDREQQGR	0	Unmodified	1590.775	0.77503245	4168	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			36.471	35.023	3	0.03069	29222	160511_QHF_FH_JSI10i_3	37.954	25.399			1.3171	1.2385	18.084	2	1	Median	1.3596	1.0899	NaN	1	1	Median	1.276	1.4075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54732000	23071000	31660000	24562000	9114900	15448000	30169000	13957000	16213000	0	0	0	0	0	0	46325	4168	43604	280370;280371	376004;376005	376004			2	
SLFEQYGK	1	Unmodified	970.476	0.47599688	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		39.614	38.864	2	0.0011298	33295	160511_QHF_FH_JSI11i_2	111.82	88.796			1.2474	1.1594	15.269	2	2	Median	1.2267	1.0407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2685	1.2916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	625410000	280050000	345360000	164690000	75386000	89306000	0	0	0	460720000	204660000	256050000	0	0	0	46326	4498;4343	43605	280372;280373	376006;376007	376007			2	
SLFGTTSGFGTSGTSMFGSATTDNHNPMK	1	Acetyl (Protein N-term)	2979.3015	0.30148627	2092	P78406	RAE1	mRNA export factor	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		96.879	96.713	3	8.4189E-48	87593	160511_QHF_FH_JSI10i_1	201.16	183.05			1.1626	1.2133	56.537	5	1	Median	1.3804	1.1593	NaN	1	0	Median	0.55792	0.66248	89.64	2	1	Median	1.2606	1.2734	6.8363	2	0	Median	NaN	NaN	NaN	0	0	Median	181040000	96456000	84585000	61804000	29692000	32112000	53791000	40336000	13455000	65447000	26428000	39018000	0	0	0	46327	2092	43606	280374;280375;280376;280377;280378	376008;376009;376010;376011;376012;376013	376010			6	
SLFLFDEMDK	1	Unmodified	1243.5795	0.57947567	2908	Q8N2E6;Q5JU69	TOR2A	Prosalusin;Salusin-alpha;Salusin-beta;Torsin-2A	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		88.226	87.684	2	0.00065821	77907	160511_QHF_FH_JSI10i_2	70.552	0			0.89236	0.99849	14.843	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73532	0.89901	NaN	1	0	Median	1.0829	1.109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49211000	21739000	27472000	0	0	0	14639000	6707300	7931400	34572000	15032000	19540000	0	0	0	46328	2908	43607	280379;280380	376014;376015	376015			1	
SLFLIIK	1	Unmodified	832.54223	0.54222595	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	81.539	77.058	2	0.0031378	41379	160513_QHF_FH_JSI10Kac_6	97.071	10.985			0.96469	0.96114	34.026	8	3	Median	1.0118	0.86459	10.192	2	0	Median	0.9632	1.1068	15.697	2	1	Median	1.3476	1.2674	77.915	2	1	Median	0.9631	1.0144	11.886	2	1	Median	172260000	81112000	91144000	50039000	28714000	21324000	66032000	28682000	37349000	22428000	8166100	14262000	33758000	15549000	18209000	46329	2588	43608	280381;280382;280383;280384;280385;280386;280387;280388	376016;376017;376018;376019;376020;376021;376022	376022			7	
SLFPENLQADK	1	Unmodified	1260.635	0.63501672	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1			1	2	1	1	58.316	57.52	2	0.00071433	49845	160511_QHF_FH_JSI11i_2	81.865	68.909			1.4114	1.4919	7.332	3	3	Median	1.753	1.4919	NaN	1	1	Median	1.3177	1.6341	NaN	1	1	Median	1.4114	1.4135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	318740000	149030000	169720000	83212000	30661000	52551000	80468000	42583000	37885000	155060000	75784000	79279000	0	0	0	46330	2332	43609	280389;280390;280391;280392;280393	376023;376024;376025;376026;376027	376025			5	
SLFPENLQADKK	2	Unmodified	1388.73	0.72997974	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	46.504	46.343	2;3	9.5894E-06	40709	160511_QHF_FH_JSI11i_3	94.688	46.684			0.99984	0.98808	9.2305	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88816	0.85289	NaN	1	0	Median	1.0168	0.9995	1.626	2	0	Median	432490000	216750000	215740000	0	0	0	0	0	0	168700000	75585000	93113000	263790000	141160000	122630000	46331	2332	43610	280394;280395;280396;280397	376028;376029;376030;376031;376032;376033;376034	376028			7	
SLFSDKQMIK	2	Acetyl (K)	1237.6377	0.63765925	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.31	61.544	2	1.8835E-06	32882	160513_QHF_FH_JSI11Kac_5	127.4	70.668			0.16015	0.15657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16015	0.15657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12346000	10798000	1547800	0	0	0	0	0	0	12346000	10798000	1547800	0	0	0	46332	1409	43611	280398	376035	376035	1364		1	
SLFSEEAANEEK	1	Unmodified	1352.6096	0.60958983	4867	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.33	36.731	2	0.028791	33302	160511_QHF_FH_JSI12i_1	47.971	28.185			0.39303	0.39839	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39303	0.39839	NaN	1	1	Median	18122000	12495000	5626900	0	0	0	0	0	0	0	0	0	18122000	12495000	5626900	46333	4867	43612	280399	376036	376036			1	
SLFSNVVTK	1	Unmodified	993.5495	0.54949617	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	6.22	1	4	4					1	3	4	3	3	3	54.162	50.537	2	2.0452E-06	42361	160511_QHF_FH_JSI10i_3	128.36	104.39			0.89451	0.97947	27.605	13	2	Median	1.3237	1.0982	23.81	4	0	Median	0.77214	0.89825	39.511	3	1	Median	1.0398	0.98054	13.239	3	0	Median	0.88031	0.93802	5.339	3	1	Plateau	7037400000	3661900000	3375500000	1295500000	546980000	748510000	1504500000	803730000	700790000	1853100000	880490000	972580000	2384300000	1430700000	953660000	46334	1381	43613	280400;280401;280402;280403;280404;280405;280406;280407;280408;280409;280410;280411;280412	376037;376038;376039;376040;376041;376042;376043;376044;376045;376046;376047;376048;376049;376050;376051;376052;376053;376054;376055;376056;376057;376058;376059;376060;376061;376062;376063	376044			27	
SLFSNVVTKNK	2	Acetyl (K)	1277.698	0.69795133	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		67.322	57.717	2	2.5035E-13	31313	160513_QHF_FH_JSI11Kac_6	149.33	105.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21018000	21018000	0	0	0	0	0	0	0	21018000	21018000	0	0	0	0	46335	1381	43614	280413	376064	376064	1323		1	
SLFSPQNTLAAPTGHPPTSGVEK	1	Unmodified	2335.1808	0.1808245	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	61.392	60.875	3	2.7848E-09	50910	160511_QHF_FH_JSI10i_3	86.625	70.859			0.90925	0.98976	18.422	4	3	Median	NaN	NaN	NaN	0	0	Median	0.82423	0.96731	NaN	1	0	Median	1.2337	1.1478	NaN	1	1	Median	0.86096	0.86626	22.092	2	2	Median	384190000	203790000	180400000	0	0	0	56946000	30436000	26510000	147870000	53383000	94486000	179370000	119970000	59401000	46336	2984	43615	280414;280415;280416;280417	376065;376066;376067;376068;376069;376070;376071	376067			7	
SLFSSIGEVESAK	1	Unmodified	1352.6824	0.68236084	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.61	6.32	1	4	4				3	4	2	4	5	5	4	70.801	65.588	2	3.8049E-41	58656	160511_QHF_FH_JSI11i_3	206.97	186.27			1.0152	1.0265	34.859	17	3	Median	0.81044	0.69961	23.542	4	0	Median	1.3909	1.6028	32.271	5	2	Median	1.0741	1.0265	6.8036	5	1	Median	0.98294	1.0111	3.2346	3	0	Plateau	3689100000	1820200000	1869000000	520200000	220000000	300200000	619120000	343130000	275990000	1373300000	675750000	697560000	1176500000	581270000	595220000	46337	2700	43616	280418;280419;280420;280421;280422;280423;280424;280425;280426;280427;280428;280429;280430;280431;280432;280433;280434;280435	376072;376073;376074;376075;376076;376077;376078;376079;376080;376081;376082;376083;376084;376085;376086;376087;376088;376089;376090;376091;376092;376093;376094;376095;376096;376097;376098;376099;376100;376101;376102;376103;376104;376105	376072			33	
SLFTTHSSAK	1	Unmodified	1077.5455	0.54547343	4533	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	15.481	15.107	2;3	0.00013865	12331	160511_QHF_FH_JSI10i_3	83.783	42.13			1.0407	1.0026	32.692	8	2	Median	1.541	1.2447	15.805	2	0	Median	1.2671	1.4794	NaN	1	0	Median	0.8512	0.80455	29.991	3	2	Median	0.95981	0.96963	13.163	2	0	Median	747940000	364580000	383360000	233440000	88664000	144780000	63680000	33211000	30469000	313050000	176450000	136600000	137770000	66254000	71516000	46338	4533	43617	280436;280437;280438;280439;280440;280441;280442;280443;280444	376106;376107;376108;376109;376110;376111;376112;376113;376114;376115;376116;376117;376118	376110			13	
SLFTYHDSR	0	Unmodified	1124.5251	0.52507234	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	28.037	27.352	3	0.0073593	22708	160511_QHF_FH_JSI12i_3	39.918	33.685			0.92078	0.88209	34.339	4	0	Median	1.8653	1.539	NaN	1	0	Median	0.62693	0.72624	NaN	1	0	Median	0.84659	0.76722	NaN	1	0	Median	1.0015	1.0142	NaN	1	0	Median	172050000	85571000	86484000	41380000	15833000	25546000	45498000	26379000	19119000	48626000	24847000	23779000	36550000	18511000	18040000	46339	5192	43618	280445;280446;280447;280448	376119;376120;376121	376121			2	
SLFVGHMDYK	1	Unmodified	1195.5696	0.56957969	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.41	6.35		3	8						6	5	3	6	3	50.27	45.911	2;3	9.4543E-05	25012	160513_QHF_FH_JSI11Kac_6	112.75	82.494			0.96444	0.95444	27.512	12	5	Median	1.2932	1.1086	25.466	3	1	Median	0.98852	1.1582	1.1968	2	0	Median	0.96726	0.9491	4.1829	4	2	Median	0.89969	0.91353	36.318	3	2	Plateau	1338900000	723870000	615000000	156400000	62197000	94206000	103600000	51829000	51772000	399610000	216620000	182980000	679260000	393220000	286030000	46340	4559	43619	280449;280450;280451;280452;280453;280454;280455;280456;280457;280458;280459;280460;280461;280462;280463;280464;280465	376122;376123;376124;376125;376126;376127;376128;376129;376130;376131;376132;376133;376134;376135;376136;376137;376138;376139;376140;376141;376142;376143	376126			22	
SLFVLPHTDHLVGYIIR	0	Unmodified	1979.0993	0.09926712	3256	Q7Z392	TRAPPC11	Trafficking protein particle complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			84.915	77.796	4	1.8771E-11	43961	160513_QHF_FH_JSI10Kac_6	121.82	105.13			1.342	1.3469	4.5033	2	1	Median	1.6231	1.3905	NaN	1	1	Median	1.1096	1.3047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132890000	66841000	66053000	44573000	13788000	30785000	88322000	53054000	35268000	0	0	0	0	0	0	46341	3256	43620	280466;280467	376144;376145	376145			2	
SLFVQELLLSTLVR	0	Unmodified	1616.9501	0.95014327	5182	Q9P0J7	KCMF1	E3 ubiquitin-protein ligase KCMF1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.89	102.89	2	0.009304	92002	160511_QHF_FH_JSI11i_3	81.565	57.183			1.0583	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0583	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24088000	10672000	13416000	0	0	0	0	0	0	24088000	10672000	13416000	0	0	0	46342	5182	43621	280468	376146	376146			0	
SLFVVVGDR	0	Unmodified	990.54983	0.54983053	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0		By MS/MS		By MS/MS	15	0								3			1		2	71.021	60.408	2	0.021151	30053	160513_QHF_FH_JSI12Kac_5	51.346	7.538			0.79167	0.92407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79167	0.92407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3400300	1604800	1795500	0	0	0	3400300	1604800	1795500	0	0	0	0	0	0	46343	4623	43622	280469;280470;280471	376147;376148;376149	376147			3	
SLGAEPLEVDLK	1	Unmodified	1269.6816	0.68163256	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	1	0	3									1	1		1	66.533	65.877	2	0.00011611	60008	160511_QHF_FH_JSI12i_1	86.879	63.559			0.73575	0.7575	18.699	3	0	Median	1.2743	1.0275	NaN	1	0	Median	0.64657	0.73129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73575	0.7575	NaN	1	0	Median	85817000	46860000	38958000	19106000	8958700	10147000	32128000	18306000	13822000	0	0	0	34583000	19595000	14988000	46344	2405	43623	280472;280473;280474	376150	376150			1	
SLGDDISSETSGDFRK	1	Unmodified	1712.7853	0.78532236	1018	P12429	ANXA3	Annexin A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.542	1	10	4							2	3	4	6	45.149	44.389	2;3	2.655E-21	37908	160511_QHF_FH_JSI12i_2	131.37	105.71			0.92394	0.92053	28.859	13	6	Median	1.0927	0.91523	4.0733	2	2	Median	0.66066	0.81109	22.829	3	2	Median	0.93678	0.94156	16.891	3	0	Median	0.81122	0.88912	41.391	5	2	Median	1567900000	833360000	734560000	221440000	110300000	111140000	406620000	236680000	169950000	487080000	236510000	250570000	452780000	249870000	202910000	46345	1018	43624	280475;280476;280477;280478;280479;280480;280481;280482;280483;280484;280485;280486;280487;280488;280489	376151;376152;376153;376154;376155;376156;376157;376158;376159;376160;376161;376162;376163;376164;376165;376166;376167;376168;376169	376156			18	
SLGEIPIVESEIK	1	Unmodified	1412.7763	0.77626123	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	79.868	79.158	2	5.1855E-06	69504	160511_QHF_FH_JSI11i_2	125.72	100.33			0.8794	0.86073	8.8836	5	2	Median	0.97848	0.83673	NaN	1	0	Median	0.72235	0.87796	NaN	1	0	Median	0.89748	0.88811	4.4295	2	1	Median	0.63927	0.72559	NaN	1	1	Median	216120000	114430000	101700000	39012000	20415000	18597000	37266000	21044000	16222000	104970000	55666000	49305000	34875000	17303000	17573000	46346	1804	43625	280490;280491;280492;280493;280494	376170;376171;376172;376173;376174	376173			5	
SLGEIPIVESEIKK	2	Unmodified	1540.8712	0.87122424	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.45		11	1					1		3	3	5	2	70.391	68.613	2;3	7.4797E-07	60962	160511_QHF_FH_JSI10i_2	129.77	110.09			0.90252	0.88932	13.653	10	9	Median	0.93311	0.80773	7.0715	2	2	Median	0.74386	0.90941	9.9003	2	2	Median	0.92166	0.92619	16.615	4	3	Median	0.82478	0.91113	13.284	2	2	Median	1140400000	602090000	538360000	171360000	91643000	79712000	256690000	158770000	97918000	482010000	236750000	245260000	230390000	114920000	115470000	46347	1804	43626	280495;280496;280497;280498;280499;280500;280501;280502;280503;280504;280505;280506;280507	376175;376176;376177;376178;376179;376180;376181;376182;376183;376184;376185;376186;376187;376188	376186			14	
SLGEISALTSK	1	Unmodified	1104.6027	0.60265396	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.03	2	5	2					4		4	5	2	2	59.307	55.33	2	1.5709E-09	47694	160511_QHF_FH_JSI11i_2	133.81	125.98			1.0713	1.0912	78.157	13	6	Median	1.3503	1.1231	60.268	4	3	Median	0.8614	1.0579	60.745	5	3	Median	0.96647	0.97891	10.083	2	0	Median	3.1822	3.4819	152.22	2	0	Median	2823300000	1383200000	1440100000	749180000	314950000	434240000	784740000	452010000	332730000	734510000	347760000	386750000	554870000	268450000	286430000	46348	1139	43627	280508;280509;280510;280511;280512;280513;280514;280515;280516;280517;280518;280519;280520	376189;376190;376191;376192;376193;376194;376195;376196;376197;376198;376199;376200;376201;376202;376203;376204;376205;376206	376198			18	
SLGELGLEHFQAPLVR	0	Unmodified	1764.9523	0.95226853	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		82.604	81.992	3	0.00034069	72096	160511_QHF_FH_JSI11i_2	57.973	40.894			1.4642	1.4415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4642	1.4415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48455000	22232000	26223000	0	0	0	0	0	0	48455000	22232000	26223000	0	0	0	46349	5166	43628	280521	376207	376207			1	
SLGEPAAGEGSAK	1	Unmodified	1172.5673	0.56733108	4446	Q9BUL9	RPP25	Ribonuclease P protein subunit p25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		16.098	15.622	2	0.002652	12916	160511_QHF_FH_JSI9i_1	65.842	38.538			0.75323	0.60503	40.15	3	3	Plateau	0.75323	0.60503	NaN	1	1	Median	0.56604	0.66178	NaN	1	1	Median	1.3467	1.2629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105580000	60984000	44596000	39602000	21878000	17724000	41764000	26507000	15257000	24214000	12599000	11615000	0	0	0	46350	4446	43629	280522;280523;280524	376208;376209;376210	376210			3	
SLGEPAAGEGSAKR	1	Acetyl (K)	1370.679	0.6790068	4446	Q9BUL9	RPP25	Ribonuclease P protein subunit p25	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		63.085	54.06	2	0.048232	29721	160513_QHF_FH_JSI10Kac_6	58.37	18.368			0.96258	1.0247	11.609	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79104	0.9439	NaN	1	0	Median	1.1713	1.1123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	123320000	69758000	53560000	0	0	0	74977000	46864000	28113000	48341000	22894000	25447000	0	0	0	46351	4446	43630	280525;280526	376211	376211			1	
SLGETQLVLYGDVEELK	1	Unmodified	1891.9779	0.97787416	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5									3	2	4	89.913	89.393	2;3	5.0126E-24	79424	160511_QHF_FH_JSI10i_2	139.86	116.62			1.1618	1.1954	17.447	8	7	Median	NaN	NaN	NaN	0	0	Median	1.0208	1.1985	25.918	2	2	Median	1.3146	1.3201	20.53	2	2	Median	1.1254	1.1937	17.504	4	3	Median	310440000	144930000	165510000	0	0	0	94469000	45319000	49150000	70029000	30120000	39909000	145940000	69495000	76447000	46352	2252	43631	280527;280528;280529;280530;280531;280532;280533;280534;280535	376212;376213;376214;376215;376216;376217;376218;376219;376220;376221;376222	376222			11	
SLGGNDELSATFLEMK	1	Unmodified	1710.8135	0.81345137	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	2	1	2	85.384	84.804	2	1.6321E-22	73352	160511_QHF_FH_JSI12i_2	142.85	124.58			0.94487	1.0385	46.78	5	3	Median	0.74588	0.66117	NaN	1	1	Median	1.3088	1.5648	57.985	2	1	Median	0.94487	0.9278	NaN	1	0	Median	0.94794	1.0445	NaN	1	1	Median	195170000	85138000	110040000	36088000	17502000	18586000	83924000	33680000	50243000	41543000	20043000	21500000	33619000	13912000	19707000	46353	1685	43632	280536;280537;280538;280539;280540;280541;280542	376223;376224;376225;376226;376227;376228;376229	376224			7	
SLGHGLINK	1	Unmodified	937.53451	0.53451481	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		22.456	21.613	3	0.00059803	17829	160511_QHF_FH_JSI10i_3	55.064	19.619			0.94095	0.90942	27.771	3	0	Median	0.94095	0.78526	NaN	1	0	Median	1.1049	1.3439	NaN	1	0	Median	0.93927	0.90942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	246030000	122300000	123730000	100960000	40793000	60166000	80916000	45283000	35633000	64160000	36229000	27931000	0	0	0	46354	3676	43633	280543;280544;280545	376230;376231	376230			2	
SLGLQLPDGQR	0	Unmodified	1182.6357	0.63568542	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	56.206	55.569	2	8.5407E-05	47522	160511_QHF_FH_JSI12i_2	94.692	64.438			1.3611	1.3326	12.681	3	1	Median	1.6474	1.4021	NaN	1	0	Median	0.98022	1.1023	NaN	1	1	Median	1.3611	1.3326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	262070000	106650000	155420000	84889000	26600000	58289000	30267000	15217000	15050000	146920000	64834000	82082000	0	0	0	46355	241	43634	280546;280547;280548;280549	376232;376233;376234	376232			2	
SLGLQLPDGQRR	0	Unmodified	1338.7368	0.73679645	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			46.958	45.372	3	0.0092169	37926	160511_QHF_FH_JSI10i_3	38.584	23.553			1.3068	1.271	31.572	2	0	Median	1.2546	1.0167	NaN	1	0	Median	1.3611	1.5889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149970000	73557000	76413000	86181000	39543000	46638000	63789000	34014000	29775000	0	0	0	0	0	0	46356	241	43635	280550;280551	376235;376236	376235			2	
SLGLSDEEIVK	1	Unmodified	1188.6238	0.62378333	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	54.917	54.109	2	8.1247E-10	48950	160511_QHF_FH_JSI11i_1	137.46	117.67			0.72793	0.71906	66.277	8	6	Median	0.64937	0.5427	9.5294	2	2	Median	0.85956	1.0369	23	2	2	Median	1.2282	1.2314	104.85	2	1	Median	0.91045	0.99864	107	2	1	Median	2113700000	1093500000	1020200000	559270000	353700000	205570000	571450000	328040000	243410000	523010000	195060000	327950000	459960000	216650000	243310000	46357	5215	43636	280552;280553;280554;280555;280556;280557;280558;280559	376237;376238;376239;376240;376241;376242;376243;376244	376237			8	
SLGLSLSGGDQEDAGR	0	Unmodified	1560.738	0.73797824	5338	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	50.529	49.989	2	4.6032E-05	45386	160511_QHF_FH_JSI12i_1	81.92	64.484			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46358	5338	43637	280560;280561	376245;376246	376246			2	
SLGMIFEK	1	Unmodified	923.47864	0.47863942	770	P00480	OTC	Ornithine carbamoyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.211	72.411	2	0.00093466	64368	160511_QHF_FH_JSI11i_3	96.253	58.015			1.1955	1.1642	14.667	4	0	Median	1.713	1.4409	NaN	1	0	Median	0.88399	1.0293	NaN	1	0	Median	1.3174	1.2294	NaN	1	0	Median	1.085	1.1024	NaN	1	0	Median	295450000	133470000	161980000	34595000	15823000	18771000	45137000	24317000	20820000	96827000	36760000	60067000	118890000	56568000	62323000	46359	770	43638	280562;280563;280564;280565	376247;376248;376249;376250;376251;376252	376248			6	
SLGNILQAK	1	Unmodified	942.54983	0.54983053	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		48.129	47.07	2	0.00015092	41261	160511_QHF_FH_JSI11i_3	106.6	50.923			1.7628	1.7972	78.185	4	4	Median	1.9229	1.6153	119.68	2	2	Median	2.4695	2.7953	NaN	1	1	Median	1.2583	1.1555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	447060000	136600000	310460000	148940000	38216000	110730000	144990000	39465000	105530000	153120000	58919000	94201000	0	0	0	46360	2409	43639	280566;280567;280568;280569	376253;376254;376255;376256	376253			4	
SLGNILQAKPTSSPAK	2	Unmodified	1610.8992	0.89917033	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		46.407	45.35	3	5.7175E-05	37096	160511_QHF_FH_JSI9i_3	82.121	63.046			0.73146	0.5811	34.461	3	0	Plateau	0.73146	0.5811	NaN	1	0	Median	0.6209	0.7002	NaN	1	0	Median	1.2078	1.1332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	432710000	211860000	220860000	169510000	87595000	81916000	143080000	86086000	56991000	120130000	38176000	81950000	0	0	0	46361	2409	43640	280570;280571;280572	376257;376258	376258			2	
SLGNVIDPLDVIYGISLQGLHNQLLNSNLDPSEVEK	1	Unmodified	3903.0266	0.026562272	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.33	0.471		4	2							2		2	2	103.14	103.09	3;4	1.2558E-54	90836	160511_QHF_FH_JSI11i_2	156.7	146.99			0.91459	0.93777	40.744	5	0	Median	0.88564	0.78332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8937	0.90533	4.9788	2	0	Median	1.7493	1.7902	8.9477	2	0	Median	310490000	162540000	147940000	68135000	32062000	36073000	0	0	0	164230000	97258000	66977000	78117000	33224000	44893000	46362	1283	43641	280573;280574;280575;280576;280577;280578	376259;376260;376261	376259			3	
SLGNVIHPDVVVNGGQDQSK	1	Unmodified	2062.0443	0.044331016	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.62		5	5					1		2	2	4	3	55.179	53.559	2;3	1.4687E-11	47345	160511_QHF_FH_JSI11i_3	133.38	118.29			0.78211	0.82448	18.222	11	2	Median	0.93571	0.8018	25.906	2	2	Median	0.77316	0.91799	21.216	2	0	Median	0.89278	0.86652	19.859	4	0	Median	1.0363	1.0901	20.168	3	0	Plateau	1846500000	982770000	863730000	233520000	113600000	119910000	266570000	170390000	96176000	729130000	359610000	369520000	617280000	339170000	278120000	46363	4983	43642	280579;280580;280581;280582;280583;280584;280585;280586;280587;280588;280589	376262;376263;376264;376265;376266;376267;376268;376269;376270;376271;376272;376273;376274;376275;376276;376277;376278;376279;376280	376262			19	
SLGPAAPIIDSPYGDPIDPEDAPESITR	0	Unmodified	2892.4029	0.4028981	4636	Q9H0L4	CSTF2T	Cleavage stimulation factor subunit 2 tau variant	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		96.7	96.438	3	0.013633	87646	160511_QHF_FH_JSI11i_1	29.154	23.61			1.3154	1.2672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3154	1.2672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6901400	3917000	2984300	0	0	0	0	0	0	6901400	3917000	2984300	0	0	0	46364	4636	43643	280590	376281	376281			1	
SLGPPGPPFNITPR	0	Unmodified	1448.7776	0.77759863	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			74.132	72.678	2	1.9491E-07	61008	160511_QHF_FH_JSI10i_3	95.094	74.79			1.4507	1.4006	26.187	2	2	Median	2.1128	1.6855	NaN	1	1	Median	0.99613	1.1639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129830000	54144000	75683000	53462000	17730000	35733000	76364000	36414000	39950000	0	0	0	0	0	0	46365	5161	43644	280591;280592;280593	376282;376283;376284	376283			3	
SLGPPQGEEDSVPR	0	Unmodified	1466.7001	0.70013617	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			1	4	4	3	41.592	36.025	2	5.6749E-30	32153	160511_QHF_FH_JSI9i_1	191.29	178.67			0.99483	1.0472	5.0931	11	0	Median	1.2782	1.0472	NaN	1	0	Median	0.83708	0.97789	5.5476	4	0	Median	1.0827	1.0386	2.5825	3	0	Plateau	1.0054	1.069	1.2747	3	0	Plateau	3894600000	2011200000	1883400000	703230000	321940000	381290000	1171600000	674390000	497250000	987430000	487700000	499740000	1032300000	527170000	505140000	46366	2094	43645	280594;280595;280596;280597;280598;280599;280600;280601;280602;280603;280604;280605	376285;376286;376287;376288;376289;376290;376291;376292;376293;376294;376295;376296;376297;376298;376299;376300;376301;376302;376303;376304;376305	376297			21	
SLGPPQGEEDSVPRDLPSWMK	1	Unmodified	2324.1107	0.11069602	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		75.808	75.076	3	9.079E-07	67005	160511_QHF_FH_JSI11i_3	81.967	52.2			1.73	1.6563	14.753	4	0	Median	1.7382	1.4507	NaN	1	0	Median	1.5796	1.8877	11.034	2	0	Median	1.7219	1.5711	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	246920000	97557000	149360000	69212000	26163000	43049000	106710000	42819000	63896000	70990000	28575000	42415000	0	0	0	46367	2094	43646	280606;280607;280608;280609;280610	376306;376307;376308;376309;376310;376311;376312;376313;376314	376307			9	
SLGPSLATDK	1	Unmodified	987.52368	0.52367535	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		32.382	31.993	2	0.0024268	27230	160511_QHF_FH_JSI11i_2	63.076	34.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46368	4698	43647	280611	376315	376315			1	
SLGPSLATDKS	1	Unmodified	1074.5557	0.55570376	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	1.33	0.471	2	1								1	1		1	32.693	31.883	2	0.0018876	27740	160511_QHF_FH_JSI9i_2	60.518	24.185			1.5849	1.5135	8.348	2	0	Median	1.6259	1.4267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5449	1.6055	NaN	1	0	Median	108160000	42238000	65921000	33310000	13318000	19991000	0	0	0	0	0	0	74850000	28920000	45930000	46369	4698	43648	280612;280613;280614	376316;376317	376317			2	
SLGQWLQEEK	1	Unmodified	1216.6088	0.60880197	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	3	2	4	1	60.685	59.916	2	1.6474E-11	53085	160511_QHF_FH_JSI11i_3	168.74	118.92			1.0334	0.96002	13.868	8	4	Median	1.1539	0.96225	4.5787	2	2	Median	0.95837	1.1352	19.452	2	0	Median	0.97577	0.92228	14.041	3	2	Median	0.89287	0.89277	NaN	1	0	Median	5910000000	2925000000	2985000000	632440000	303310000	329130000	1377600000	700510000	677120000	3061600000	1474100000	1587500000	838320000	447140000	391180000	46370	1372	43649	280615;280616;280617;280618;280619;280620;280621;280622;280623;280624	376318;376319;376320;376321;376322;376323;376324;376325;376326;376327;376328;376329;376330;376331;376332	376319			15	
SLGQWTIQQQK	1	Unmodified	1315.6884	0.68844927	3448	Q8IXQ6	PARP9	Poly [ADP-ribose] polymerase 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.566	47.446	2	5.9766E-08	41922	160511_QHF_FH_JSI11i_3	125.97	86.947			0.77186	0.76083	13.592	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89682	0.83758	NaN	1	0	Median	0.66431	0.69111	NaN	1	1	Median	57905000	35012000	22892000	0	0	0	0	0	0	43479000	26506000	16973000	14426000	8506700	5919300	46371	3448	43650	280625;280626	376333;376334;376335	376334			3	
SLGSADELFK	1	Unmodified	1065.5342	0.53424004	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.016	55.62	2	0.0076728	50186	160511_QHF_FH_JSI10i_1	52.549	30.589			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46372	2627	43651	280627	376336	376336			1	
SLGSAGPSGTLPR	0	Unmodified	1198.6306	0.63060004	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	33.696	33.013	2	2.8692E-06	28736	160511_QHF_FH_JSI9i_2	121.9	90.477			1.6035	1.9651	49.164	5	3	Median	1.5917	1.3354	NaN	1	1	Median	1.6035	1.9651	NaN	1	0	Median	1.3948	1.2669	NaN	1	1	Median	2.8843	3.1184	44.763	2	1	Median	278210000	95023000	183190000	61984000	20758000	41225000	83165000	29134000	54031000	33051000	13058000	19993000	100010000	32074000	67936000	46373	3760	43652	280628;280629;280630;280631;280632	376337;376338;376339;376340;376341;376342;376343	376339			7	
SLGSALK	1	Unmodified	674.39629	0.39629	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			11.147	10.62	2	0.045437	8537	160511_QHF_FH_JSI10i_2	44.692	5.4738			0.76009	0.9326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76009	0.9326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204730000	110090000	94634000	0	0	0	204730000	110090000	94634000	0	0	0	0	0	0	46374	2494	43653	280633	376344	376344			1	
SLGSALKPGEGR	1	Unmodified	1170.6357	0.63568542	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			3							2	1			21.405	20.157	2;3	0.010342	16183	160511_QHF_FH_JSI9i_3	73.067	45.324			0.70905	0.67676	67.34	3	0	Plateau	1.2203	1.0188	94.934	2	0	Median	0.98588	1.1175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74069000	37131000	36938000	45278000	20661000	24617000	28791000	16470000	12321000	0	0	0	0	0	0	46375	2494	43654	280634;280635;280636	376345;376346;376347	376345			3	
SLGSASPGPGQPPLSSPTR	0	Unmodified	1791.9115	0.91152593	4579	Q9C0B5	ZDHHC5	Palmitoyltransferase ZDHHC5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		43.818	43.439	2	0.0042929	39260	160511_QHF_FH_JSI11i_1	48.527	15.921			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46376	4579	43655	280637	376348	376348			1	
SLGSTAGTDITVNSVILLPK	1	Unmodified	1985.1045	0.10447166	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	5										2		3	92.57	92.296	2;3	5.3297E-33	83568	160511_QHF_FH_JSI10i_1	153.14	135.77			0.68413	0.77478	12.007	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.68352	0.77478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8444	0.84275	15.531	2	1	Median	55009000	29698000	25311000	0	0	0	23406000	12786000	10620000	0	0	0	31604000	16913000	14691000	46377	2801	43656	280638;280639;280640;280641;280642	376349;376350;376351;376352;376353	376353			5	
SLGSVQAPSYGAR	0	Unmodified	1291.6521	0.65206377	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.76	6.13	4	3	4			3	6	6	3	5	6	10	8	42.767	36.771	2	4.7847E-53	31719	160511_QHF_FH_JSI12i_3	220.25	175.09			0.94141	0.92575	18.412	25	11	Median	0.97964	0.82922	7.4473	5	0	Median	0.79735	0.9484	18.488	6	4	Median	0.96802	0.95036	22.765	8	5	Median	0.85616	0.935	18.523	6	2	Median	5958300000	3110200000	2848100000	1072800000	571300000	501490000	772160000	473650000	298510000	2623200000	1296500000	1326700000	1490200000	768790000	721390000	46378	842	43657	280643;280644;280645;280646;280647;280648;280649;280650;280651;280652;280653;280654;280655;280656;280657;280658;280659;280660;280661;280662;280663;280664;280665;280666;280667;280668;280669;280670;280671	376354;376355;376356;376357;376358;376359;376360;376361;376362;376363;376364;376365;376366;376367;376368;376369;376370;376371;376372;376373;376374;376375;376376;376377;376378;376379;376380;376381;376382;376383;376384;376385;376386;376387;376388;376389;376390;376391;376392;376393;376394	376393			41	
SLGSVQAPSYGARPVSSAASVYAGAGGSGSR	0	Unmodified	2853.4005	0.40054711	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	6.14	3	4	2						3	3	4	3	2	60.335	57.128	3	4.4164E-45	50511	160511_QHF_FH_JSI10i_2	161.24	148.43			1.0498	1.0296	11.25	11	0	Median	1.0611	0.88361	16.956	3	0	Plateau	0.87152	1.0296	1.813	3	0	Median	1.2102	1.1523	14.864	3	0	Median	1.0129	1.0662	9.79	2	0	Median	1029300000	499250000	530000000	345470000	149590000	195890000	431960000	229270000	202690000	185040000	86161000	98879000	66786000	34234000	32552000	46379	842	43658	280672;280673;280674;280675;280676;280677;280678;280679;280680;280681;280682;280683	376395;376396;376397;376398;376399;376400;376401;376402;376403;376404;376405;376406;376407;376408;376409;376410;376411;376412;376413;376414;376415;376416;376417;376418;376419	376412			25	
SLGSVQLINDR	0	Unmodified	1200.6463	0.64625011	4070;36	A8MPP1;Q96FC9	DDX11L8;DDX11	Putative ATP-dependent RNA helicase DDX11-like protein 8;Probable ATP-dependent RNA helicase DDX11	no	no	0	0	0	0				By MS/MS	3	0			1										1	50.353	50.117	2	0.00061177	42938	160511_QHF_FH_JSI12i_3	75.197	39.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46380	36;4070	43659	280684	376420	376420			1	
SLGTADVHFER	0	Unmodified	1230.5993	0.59929991	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.62		8	6					4	8	5	5	9	7	40.319	35.437	2;3	1.516E-18	30315	160511_QHF_FH_JSI12i_2	157.68	157.68			0.98863	1.0162	22.447	25	10	Median	1.2875	1.0793	34.515	4	2	Median	0.91806	1.1153	30.057	5	2	Median	1.0112	1.0141	12.732	9	5	Median	0.88723	0.99198	16.021	7	1	Median	9949800000	4690000000	5259800000	1341800000	615240000	726540000	1752700000	960480000	792250000	3939700000	1784700000	2155000000	2915600000	1329600000	1586000000	46381	3337	43660	280685;280686;280687;280688;280689;280690;280691;280692;280693;280694;280695;280696;280697;280698;280699;280700;280701;280702;280703;280704;280705;280706;280707;280708;280709;280710	376421;376422;376423;376424;376425;376426;376427;376428;376429;376430;376431;376432;376433;376434;376435;376436;376437;376438;376439;376440;376441;376442;376443;376444;376445;376446;376447;376448;376449;376450;376451;376452;376453;376454;376455;376456;376457;376458;376459;376460	376429			40	
SLGTADVHFERK	1	Unmodified	1358.6943	0.69426293	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			28.546	27.202	3	4.1783E-05	22190	160511_QHF_FH_JSI9i_3	66.393	55.844			1.5285	1.2174	50.918	3	2	Median	1.5285	1.2174	NaN	1	0	Median	1.5035	1.7382	65.877	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114850000	40163000	74683000	52737000	18810000	33927000	62109000	21353000	40756000	0	0	0	0	0	0	46382	3337	43661	280711;280712;280713	376461;376462;376463;376464	376463			4	
SLGTDLMNEMR	0	Unmodified	1265.5744	0.57440707	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	66.733	65.955	2	2.4116E-07	57511	160511_QHF_FH_JSI11i_2	121.6	76.522			0.92102	0.93394	25.425	5	0	Median	0.92102	0.79557	NaN	1	0	Median	0.69928	0.87083	NaN	1	0	Median	0.94472	0.98737	NaN	1	0	Median	1.1276	1.1965	35.031	2	0	Median	1864500000	961210000	903330000	288410000	152780000	135630000	391960000	231940000	160020000	743940000	346600000	397350000	440220000	229890000	210330000	46383	841	43662	280714;280715;280716;280717;280718	376465;376466;376467;376468;376469;376470	376468			4	
SLGTDLMNEMRR	0	Unmodified	1421.6755	0.6755181	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			60.847	59.323	3	0.00045117	48660	160511_QHF_FH_JSI9i_3	52.903	39.947			1.1106	1.0688	0.54873	2	0	Median	1.326	1.0729	NaN	1	0	Median	0.93018	1.0646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142840000	59890000	82955000	82794000	30000000	52794000	60050000	29890000	30161000	0	0	0	0	0	0	46384	841	43663	280719;280720	376471;376472;376473	376472			3	
SLGTGAPVIESPYGETISPEDAPESISK	1	Unmodified	2830.376	0.37601465	1401	P33240	CSTF2	Cleavage stimulation factor subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.29	81.822	3	6.9425E-09	74581	160511_QHF_FH_JSI12i_1	70.647	58.794			1.0761	1.0519	7.6433	4	0	Median	1.2082	0.99365	NaN	1	0	Median	0.96563	1.113	NaN	1	0	Median	1.1889	1.1515	NaN	1	0	Median	0.97402	0.9941	NaN	1	0	Median	325970000	169430000	156540000	100300000	50477000	49822000	85572000	46759000	38813000	73932000	35658000	38274000	66167000	36534000	29633000	46385	1401	43664	280721;280722;280723;280724	376474;376475;376476;376477;376478;376479;376480;376481;376482;376483;376484	376480			11	
SLGTQPPKK	2	Unmodified	954.54983	0.54983053	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							2	4	3	2	8.7938	8.4992	2;3	3.3028E-16	5838	160511_QHF_FH_JSI12i_3	182.69	112.69			1.0514	1.0927	7.7114	11	2	Median	1.2963	1.0933	11.415	2	0	Median	0.95538	1.0815	7.8808	4	2	Median	1.043	0.97988	11.077	3	0	Plateau	1.0641	1.0998	0.90577	2	0	Median	4494700000	2605000000	1889700000	96542000	45831000	50712000	737920000	385940000	351980000	1267800000	635290000	632510000	2392500000	1538000000	854490000	46386	2586	43665	280725;280726;280727;280728;280729;280730;280731;280732;280733;280734;280735	376485;376486;376487;376488;376489;376490;376491;376492;376493;376494;376495;376496;376497;376498;376499;376500;376501	376500			17	
SLGVDMDDKDDAHYAVQAR	1	Unmodified	2104.9484	0.94838172	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		43.651	43.651	4	4.6778E-05	38481	160511_QHF_FH_JSI11i_3	65.085	55.67			1.7846	1.668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7846	1.668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66853000	19995000	46858000	0	0	0	0	0	0	66853000	19995000	46858000	0	0	0	46387	4559	43666	280736	376502	376502			1	
SLGVDSQIK	1	Unmodified	945.51311	0.51311067	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	31.153	28.76	2	0.0077245	17475	160513_QHF_FH_JSI11Kac_4	60.91	23.183			1.1401	1.1444	13.302	5	0	Median	1.3436	1.1444	NaN	1	0	Median	1.2017	1.4332	NaN	1	0	Median	1.0551	1.0357	1.1022	2	0	Median	1.1401	1.173	NaN	1	0	Median	406550000	183840000	222710000	65715000	29051000	36663000	131900000	64089000	67812000	106980000	44615000	62360000	101960000	46084000	55878000	46388	5495	43667	280737;280738;280739;280740;280741	376503;376504;376505	376505			3	
SLGVHFSK	1	Unmodified	873.47085	0.47085192	2620	Q15057;Q15027	ACAP2;ACAP1	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2;Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	26.516	26.069	3	0.0014998	21755	160511_QHF_FH_JSI10i_3	62.823	30.888			0.95988	0.88773	39.011	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1703	1.4018	NaN	1	0	Median	0.95988	0.88773	NaN	1	0	Median	0.63617	0.64507	NaN	1	0	Median	346940000	167910000	179030000	0	0	0	91371000	47535000	43836000	87576000	39002000	48574000	168000000	81377000	86621000	46389	2620	43668	280742;280743;280744	376506;376507;376508;376509;376510	376508			5	
SLGVHLSFIR	0	Unmodified	1127.6451	0.64512789	4881;3555	Q9NP61;Q8N6H7	ARFGAP3;ARFGAP2	ADP-ribosylation factor GTPase-activating protein 3;ADP-ribosylation factor GTPase-activating protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.742	62.954	3	2.5842E-09	33051	160513_QHF_FH_JSI12Kac_6	123.79	93.18			1.3827	1.2593	18.066	4	0	Median	1.3839	1.1966	NaN	1	0	Median	0.82033	0.97817	NaN	1	0	Median	1.3814	1.3253	NaN	1	0	Median	1.4391	1.4992	NaN	1	0	Median	142720000	74318000	68404000	14128000	7436300	6691200	75454000	45826000	29628000	17045000	6414300	10631000	36095000	14641000	21453000	46390	4881;3555	43669	280745;280746;280747;280748	376511;376512;376513;376514;376515	376513			5	
SLGVTQLAVAVNK	1	Unmodified	1298.7558	0.75580056	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	65.143	64.547	2	7.7515E-06	57473	160511_QHF_FH_JSI11i_3	123.62	109.5			0.90564	0.95034	5.5841	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84832	0.95034	NaN	1	0	Median	1.1114	1.0171	NaN	1	0	Median	0.90564	0.91049	NaN	1	0	Median	194230000	96196000	98031000	0	0	0	21548000	10838000	10710000	70110000	33644000	36466000	102570000	51714000	50855000	46391	5610	43670	280749;280750;280751	376516;376517	376516			0	
SLGYAYVNFQQPADAER	0	Unmodified	1927.9064	0.90644055	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.97	6.72	4	7	6					5	8	7	6	8	9	69.856	65.375	2;3	1.2459E-296	58451	160511_QHF_FH_JSI10i_2	368.83	346.6			1.1223	1.1295	13.287	30	1	Median	1.3338	1.1335	8.5756	7	0	Median	0.98632	1.1649	15.193	6	0	Median	1.1223	1.1047	12.818	8	0	Median	1.0702	1.1153	16.908	9	1	Median	5386800000	2532600000	2854300000	844700000	364210000	480490000	1198700000	611680000	587030000	2004600000	926160000	1078400000	1338800000	630530000	708320000	46392	2385;1009	43671	280752;280753;280754;280755;280756;280757;280758;280759;280760;280761;280762;280763;280764;280765;280766;280767;280768;280769;280770;280771;280772;280773;280774;280775;280776;280777;280778;280779;280780;280781	376518;376519;376520;376521;376522;376523;376524;376525;376526;376527;376528;376529;376530;376531;376532;376533;376534;376535;376536;376537;376538;376539;376540;376541;376542;376543;376544;376545;376546;376547;376548;376549;376550;376551;376552;376553;376554;376555;376556;376557;376558;376559;376560;376561;376562;376563;376564;376565;376566	376553			49	
SLHDAIMIVR	0	Oxidation (M)	1169.6227	0.62267789	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.87	6.43			7					1	7	4	4	3	4	48.288	42.907	2;3	0.00011401	36052	160511_QHF_FH_JSI10i_3	88.136	72.474			0.96043	0.95927	20.592	15	0	Median	1.3961	1.1901	12.129	4	0	Median	0.76914	0.89816	34.367	4	0	Median	0.96888	0.89724	5.0578	3	0	Plateau	0.8953	0.91831	6.9295	4	0	Median	875600000	431510000	444090000	136460000	54794000	81668000	276060000	156350000	119710000	240830000	105980000	134860000	222240000	114390000	107860000	46393	4321	43672	280782;280783;280784;280785;280786;280787;280788;280789;280790;280791;280792;280793;280794;280795;280796	376567;376568;376569;376570;376571;376572;376573;376574;376575;376576;376577;376578;376579;376580;376581;376582;376583	376572		2450	16	
SLHDAIMIVR	0	Unmodified	1153.6278	0.62776327	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.43		7	8						8	6	7	5	5	54.435	50.48	2;3	8.9844E-11	44302	160511_QHF_FH_JSI11i_3	162.97	120.1			0.93948	1.0039	17.577	22	4	Median	1.3248	1.1011	14.386	6	2	Median	0.85211	1.0219	23.101	6	2	Median	0.92398	0.86906	12.54	5	0	Median	0.89743	0.96035	9.2945	5	0	Median	8581200000	3600800000	4980400000	903490000	395410000	508070000	2004700000	1088000000	916630000	2729700000	972770000	1756900000	2943400000	1144500000	1798800000	46394	4321	43672	280797;280798;280799;280800;280801;280802;280803;280804;280805;280806;280807;280808;280809;280810;280811;280812;280813;280814;280815;280816;280817;280818;280819	376584;376585;376586;376587;376588;376589;376590;376591;376592;376593;376594;376595;376596;376597;376598;376599;376600;376601;376602;376603;376604;376605;376606;376607;376608;376609;376610;376611;376612;376613;376614;376615;376616;376617;376618;376619;376620;376621;376622;376623;376624;376625;376626;376627;376628	376590			45	
SLHDALCVIR	0	Unmodified	1182.6179	0.61792687	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		5	10							1	2	6	6	47.342	46.67	2;3	5.6218E-14	40598	160511_QHF_FH_JSI11i_3	157.91	0			0.91622	1.0155	59.606	13	2	Median	1.228	1.0251	NaN	1	0	Median	2.5007	2.9069	117.4	2	1	Median	0.85498	0.82879	23.69	5	1	Median	0.91622	1.0155	25.667	5	0	Median	1920000000	810820000	1109200000	34714000	16899000	17815000	442630000	104380000	338250000	810060000	376590000	433470000	632620000	312950000	319680000	46395	1630	43673	280820;280821;280822;280823;280824;280825;280826;280827;280828;280829;280830;280831;280832;280833;280834	376629;376630;376631;376632;376633;376634;376635;376636;376637;376638;376639;376640;376641;376642;376643;376644	376630			15	
SLHDALCVLAQTVK	1	Unmodified	1553.8236	0.82356254	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		2	12							4	5	3	2	86.003	85.328	2;3	7.1928E-81	75664	160511_QHF_FH_JSI11i_3	242.82	222.04			0.89388	0.87742	51.582	11	4	Median	1.8382	1.5105	76.818	2	1	Median	0.75632	0.86109	64.53	4	2	Median	0.74889	0.66755	6.6669	3	1	Plateau	1.1298	1.1553	7.1201	2	0	Median	1235900000	584080000	651840000	73084000	27885000	45199000	375180000	175070000	200100000	337010000	156820000	180190000	450650000	224300000	226340000	46396	2090	43674	280835;280836;280837;280838;280839;280840;280841;280842;280843;280844;280845;280846;280847;280848	376645;376646;376647;376648;376649;376650;376651;376652;376653;376654;376655;376656;376657;376658;376659;376660;376661;376662;376663;376664;376665;376666;376667;376668;376669;376670;376671;376672;376673;376674;376675;376676;376677;376678;376679	376646			35	
SLHDALCVVK	1	Unmodified	1140.5961	0.59612879	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	41.427	40.749	2;3	1.8505E-11	34519	160511_QHF_FH_JSI12i_3	175.51	143.58			1.2084	1.2077	30.747	12	0	Median	1.2252	1.0326	26.564	2	0	Median	0.91205	1.0999	8.8213	2	0	Median	0.91166	0.89253	32.548	4	0	Median	1.4458	1.5465	12.288	4	0	Median	1512900000	675410000	837480000	102430000	45363000	57067000	191880000	95250000	96626000	628910000	315480000	313430000	589670000	219310000	370360000	46397	1132	43675	280849;280850;280851;280852;280853;280854;280855;280856;280857;280858;280859;280860	376680;376681;376682;376683;376684;376685;376686;376687;376688;376689;376690;376691;376692;376693;376694;376695;376696;376697;376698	376697			18	
SLHDALCVVKR	1	Acetyl (K)	1338.7078	0.70780451	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	58.979	49.768	2;3	3.8402E-11	27364	160513_QHF_FH_JSI10Kac_6	140.49	111.76			1.1587	1.1766	65.513	8	1	Median	1.3517	1.1766	7.7662	2	0	Median	0.42482	0.50023	138.05	2	1	Median	1.0623	0.99552	12.917	2	0	Median	1.176	1.2625	1.3333	2	0	Median	339680000	188260000	151420000	43043000	19177000	23866000	141210000	98183000	43022000	85246000	38162000	47085000	70183000	32734000	37449000	46398	1132	43676	280861;280862;280863;280864;280865;280866;280867;280868;280869	376699;376700;376701;376702;376703;376704;376705	376704	985		7	
SLHLDKSSSR	1	Acetyl (K)	1170.5993	0.59929991	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.325	20.126	3	0.040441	11736	160513_QHF_FH_JSI11Kac_6	35.645	28			0.69732	0.68296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69732	0.68296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5092200	3074000	2018200	0	0	0	0	0	0	5092200	3074000	2018200	0	0	0	46399	4254	43677	280870	376706	376706			1	
SLHPWYGITPTSSPK	1	Unmodified	1669.8464	0.84640648	3519	Q8N3F8	MICALL1	MICAL-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.259	54.259	2;3	0.00075086	46619	160511_QHF_FH_JSI12i_3	66.262	48.827			0.78667	0.75725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78667	0.75725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62057000	33020000	29037000	0	0	0	0	0	0	62057000	33020000	29037000	0	0	0	46400	3519	43678	280871;280872	376707;376708;376709	376709			3	
SLHQAIEGDTSGDFLK	1	Unmodified	1716.8319	0.83187862	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							3	2	2	4	52.713	51.895	2;3	6.8013E-30	44522	160511_QHF_FH_JSI12i_2	185.59	159.55			1.2663	1.317	23.451	8	4	Median	1.6888	1.4581	40.536	2	1	Median	1.1223	1.3476	NaN	1	0	Median	1.351	1.2939	7.2652	2	1	Median	1.1609	1.2872	31.575	3	2	Median	735210000	302800000	432410000	133570000	50570000	82998000	91925000	51078000	40847000	261350000	99937000	161410000	248360000	101210000	147150000	46401	891	43679	280873;280874;280875;280876;280877;280878;280879;280880;280881;280882;280883	376710;376711;376712;376713;376714;376715;376716;376717;376718;376719;376720;376721;376722;376723;376724;376725;376726;376727	376712			18	
SLHQLLEVLLALLDK	1	Unmodified	1704.0186	0.018557183	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.25	98.528	3	1.2192E-10	58210	160513_QHF_FH_JSI10Kac_6	122.1	103.96			0.52001	0.5996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52001	0.5996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85811000	55666000	30145000	0	0	0	85811000	55666000	30145000	0	0	0	0	0	0	46402	5468	43680	280884;280885	376728;376729	376729			2	
SLHSAGPPLLAVTAAPPAQPLAK	1	Unmodified	2206.2474	0.24738792	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	74.631	74.057	3	5.2588E-07	65962	160511_QHF_FH_JSI11i_3	72.568	64.178			1.9076	1.9213	43.163	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.74831	0.87894	NaN	1	0	Median	2.2066	2.0834	NaN	1	1	Median	1.1389	1.3312	NaN	1	1	Median	290870000	101260000	189610000	0	0	0	25830000	14707000	11122000	192510000	60839000	131670000	72524000	25712000	46812000	46403	1259	43681	280886;280887;280888	376730;376731;376732	376730			3	
SLHSATTIGNK	1	Unmodified	1127.5935	0.59348625	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.73		1	10						2	4	2	5	2	12.963	11.433	2;3	1.1308E-29	9136	160511_QHF_FH_JSI9i_3	190.02	155.21			0.87096	0.9027	48.262	13	5	Median	1.1879	0.97414	11.526	4	0	Median	0.83999	0.96327	7.9831	2	0	Median	0.83891	0.80063	76.157	5	5	Median	0.68569	0.70594	25.392	2	0	Median	2234100000	1030100000	1204000000	379810000	178030000	201780000	419830000	226080000	193750000	1019600000	398310000	621280000	414870000	227660000	187210000	46404	1743	43682	280889;280890;280891;280892;280893;280894;280895;280896;280897;280898;280899;280900;280901	376733;376734;376735;376736;376737;376738;376739;376740;376741;376742;376743;376744;376745;376746;376747;376748;376749;376750	376742			18	
SLHSIINPPIAK	1	Unmodified	1288.7503	0.75032125	3948	Q969S9	GFM2	Ribosome-releasing factor 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.65	50.803	3	0.0012094	42488	160511_QHF_FH_JSI10i_3	62.408	56.565			0.28939	0.26828	59.09	4	4	Linear	0.68902	0.55703	NaN	1	1	Median	0.93815	1.101	NaN	1	1	Median	0.31986	0.30831	NaN	1	1	Median	0.32595	0.32752	NaN	1	1	Median	345860000	280130000	65724000	54925000	41857000	13068000	26930000	14292000	12637000	175560000	154570000	20989000	88442000	69413000	19029000	46405	3948	43683	280902;280903;280904;280905	376751;376752;376753;376754	376752			4	
SLHSTHNR	0	Unmodified	950.46823	0.46822616	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0	By matching	By MS/MS			1.5	0.5	1	1								1	1			25.581	24.925	2	0.021649	21884	160511_QHF_FH_JSI10i_1	44.692	0			1.2278	1.2311	29.356	2	0	Median	1.7843	1.5151	NaN	1	0	Median	0.84491	1.0003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92339000	44562000	47777000	39367000	14723000	24644000	52972000	29839000	23133000	0	0	0	0	0	0	46406	2621	43684	280906;280907	376755	376755			1	
SLHSVVQTLESDK	1	Unmodified	1441.7413	0.7412727	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.88	0.331		1	7							3	3	2		56.165	55.058	2;3	5.495E-11	46317	160511_QHF_FH_JSI10i_3	153.74	132.65			1.3021	1.5041	63.254	7	4	Median	1.4737	1.2089	55.922	2	1	Median	0.70202	0.8108	87.787	3	1	Plateau	1.0272	0.97929	70.341	2	2	Median	NaN	NaN	NaN	0	0	Median	279760000	133170000	146590000	49050000	16883000	32167000	117340000	60333000	57005000	113370000	55953000	57422000	0	0	0	46407	1360	43685	280908;280909;280910;280911;280912;280913;280914;280915	376756;376757;376758;376759;376760;376761;376762;376763	376759			8	
SLHTLFGDELCK	1	Unmodified	1418.6864	0.68640036	50	CON__P02769			yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.484	60.347	3	4.4087E-05	51968	160511_QHF_FH_JSI12i_3	67.456	49.648		+	0.74582	0.73104	35.181	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60812	0.57003	NaN	1	0	Median	0.9147	0.93751	NaN	1	0	Median	247720000	135850000	111870000	0	0	0	0	0	0	105080000	70983000	34095000	142650000	64867000	77780000	46408	50	43686	280916;280917	376764;376765;376766	376766			2	
SLIATVEK	1	Unmodified	859.50148	0.50148335	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.726	34.389	2	0.02782	29048	160511_QHF_FH_JSI12i_2	51.066	0.93968			0.70258	0.75509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70258	0.75509	NaN	1	1	Median	40158000	24595000	15562000	0	0	0	0	0	0	0	0	0	40158000	24595000	15562000	46409	2457	43687	280918	376767	376767			1	
SLIAVGLGVAALAFAGR	0	Unmodified	1584.9352	0.9351619	5679	Q9Y5T4	DNAJC15	DnaJ homolog subfamily C member 15	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.466	92.746	2	1.9626E-55	54259	160513_QHF_FH_JSI10Kac_6	195.25	159.29			0.72043	0.86224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72043	0.86224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125040000	69838000	55203000	0	0	0	125040000	69838000	55203000	0	0	0	0	0	0	46410	5679	43688	280919	376768;376769	376769			2	
SLICSISNEVPEHPCVSPVSNHVYER	0	Acetyl (Protein N-term)	3050.4226	0.42260446	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	84.239	83.896	3	3.5503E-06	74900	160511_QHF_FH_JSI11i_3	56.681	54.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46411	5426	43689	280920;280921;280922;280923	376770;376771;376772;376773;376774;376775	376770			6	
SLIEEGGDWDRR	0	Unmodified	1431.6743	0.67425577	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	3	1	41.477	41.029	2;3	5.6757E-06	35900	160511_QHF_FH_JSI11i_3	110.08	102.47			0.9476	0.90442	18.251	6	2	Median	1.0817	0.90328	NaN	1	0	Median	0.80563	0.97562	NaN	1	0	Median	0.94196	0.90557	5.1267	3	1	Plateau	0.58075	0.60261	NaN	1	1	Median	478500000	229970000	248530000	63936000	28845000	35091000	142420000	74911000	67505000	234670000	105040000	129630000	37473000	21173000	16301000	46412	2598	43690	280924;280925;280926;280927;280928;280929	376776;376777;376778;376779;376780;376781	376777			4	
SLIFPNFEPLHK	1	Unmodified	1440.7765	0.776536	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	2	1	4	83.278	82.736	2;3	8.8934E-06	68223	160511_QHF_FH_JSI9i_3	103.88	95.905			0.76614	0.92938	25.986	7	2	Median	1.1714	0.93391	NaN	1	0	Median	0.71322	0.87471	8.5749	2	0	Median	1.0165	0.95028	NaN	1	0	Median	1.0709	0.90046	41.495	3	2	Plateau	750380000	381900000	368480000	94969000	46675000	48294000	98215000	57913000	40302000	160050000	78722000	81331000	397140000	198590000	198560000	46413	5627	43691	280930;280931;280932;280933;280934;280935;280936;280937;280938	376782;376783;376784;376785;376786;376787;376788;376789;376790;376791;376792	376786			11	
SLIGMTK	1	Unmodified	748.41531	0.41531088	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	3	0			3							1		1	1	31.732	31.234	2	0.047225	25692	160511_QHF_FH_JSI9i_3	43.808	8.7024			0.83533	0.67508	45.512	3	0	Median	0.83533	0.67508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47166	0.44248	NaN	1	0	Median	1.0685	1.0987	NaN	1	0	Median	512860000	266070000	246790000	59533000	28477000	31056000	0	0	0	145930000	63373000	82556000	307400000	174220000	133180000	46414	2448	43692	280939;280940;280941	376793	376793			1	
SLIGVEYKPVSATGAEDK	2	Unmodified	1862.9626	0.96255845	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.48	5.69	1	9	6					2	3	4	3	6	8	55.105	51.905	2;3	3.8692E-22	45798	160511_QHF_FH_JSI11i_3	178.07	156.31			0.85238	0.89084	27.929	19	4	Median	1.2413	1.0599	51.331	3	0	Median	0.80222	0.98253	13.011	3	0	Median	0.85854	0.84478	15.624	6	1	Median	0.85238	0.86344	31.056	7	3	Median	7596400000	3717300000	3879000000	865850000	385060000	480790000	1014400000	538980000	475410000	2459700000	1156500000	1303200000	3256400000	1636800000	1619600000	46415	878	43693	280942;280943;280944;280945;280946;280947;280948;280949;280950;280951;280952;280953;280954;280955;280956;280957;280958;280959;280960;280961;280962	376794;376795;376796;376797;376798;376799;376800;376801;376802;376803;376804;376805;376806;376807;376808;376809;376810;376811;376812;376813;376814;376815;376816;376817;376818;376819;376820;376821;376822;376823;376824;376825;376826;376827;376828;376829;376830;376831;376832;376833;376834;376835	376798			42	
SLIHTVLLQK	1	Unmodified	1150.7074	0.7073938	4172	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.074	52.508	2	0.031793	42927	160511_QHF_FH_JSI9i_3	57.032	43.453			1.0341	1.0049	3.101	2	0	Median	1.1846	0.98307	NaN	1	0	Median	0.90275	1.0271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30922000	12147000	18776000	17200000	5302700	11897000	13723000	6844300	6878400	0	0	0	0	0	0	46416	4172	43694	280963;280964	376836;376837	376837			0	
SLIIDEGEDDLGR	0	Unmodified	1430.6889	0.68890278	180	O14618	CCS	Copper chaperone for superoxide dismutase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		60.355	59.85	2	0.00055741	52547	160511_QHF_FH_JSI9i_2	83.397	68.73			0.87077	0.89895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87077	0.89895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34847000	19226000	15620000	0	0	0	0	0	0	34847000	19226000	15620000	0	0	0	46417	180	43695	280965;280966	376838;376839	376838			2	
SLIIDEGEDDLGRGGHPLSK	1	Unmodified	2107.0546	0.054561351	180	O14618	CCS	Copper chaperone for superoxide dismutase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		56.564	55.537	3;4	2.0803E-05	46396	160511_QHF_FH_JSI10i_3	85.937	76.753			1.4123	1.3185	37.217	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.83412	0.95869	45.752	2	1	Median	1.4123	1.3185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138130000	54863000	83266000	0	0	0	60775000	24220000	36555000	77355000	30643000	46711000	0	0	0	46418	180	43696	280967;280968;280969	376840;376841;376842;376843	376843			3	
SLIINTFYSNK	1	Unmodified	1298.6871	0.68705229	2869	Q58FF6	HSP90AB4P	Putative heat shock protein HSP 90-beta 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	5.94	3	4	8	3	2	3	2	2	6	7	12	7	7	71.039	65.891	2	1.1516E-72	59439	160511_QHF_FH_JSI12i_3	242.83	177.8			0.90293	0.94787	25.374	30	10	Median	1.1126	0.95342	13.742	6	3	Median	0.88988	1.0251	22.045	12	5	Median	0.93586	0.93351	10.128	6	0	Median	0.8379	0.88663	41.855	6	2	Median	79231000000	39741000000	39490000000	23642000000	11044000000	12598000000	34724000000	17815000000	16908000000	15136000000	7518800000	7617200000	5729600000	3363200000	2366400000	46419	2869	43697	280970;280971;280972;280973;280974;280975;280976;280977;280978;280979;280980;280981;280982;280983;280984;280985;280986;280987;280988;280989;280990;280991;280992;280993;280994;280995;280996;280997;280998;280999;281000;281001;281002	376844;376845;376846;376847;376848;376849;376850;376851;376852;376853;376854;376855;376856;376857;376858;376859;376860;376861;376862;376863;376864;376865;376866;376867;376868;376869;376870;376871;376872;376873;376874;376875;376876;376877;376878;376879;376880;376881;376882;376883;376884;376885;376886;376887;376888;376889;376890;376891;376892;376893;376894;376895;376896;376897;376898;376899;376900;376901;376902;376903;376904;376905;376906;376907	376900			64	
SLIIVHPSWFIR	0	Unmodified	1466.8398	0.83980496	2336	Q12982;Q86WG3	BNIP2;ATCAY	BCL2/adenovirus E1B 19 kDa protein-interacting protein 2;Caytaxin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	84.198	75.956	2;3	3.4397E-20	42881	160513_QHF_FH_JSI10Kac_6	158.4	122.1			0.95848	1.0232	13.65	8	0	Median	1.1869	1.0125	27.978	2	0	Median	0.83028	0.99163	9.9351	2	0	Median	1.1812	1.1309	11.048	2	0	Median	0.91681	0.96949	4.5102	2	0	Median	5551400000	2664700000	2886600000	1497900000	623590000	874340000	2755500000	1460300000	1295200000	818840000	360810000	458020000	479150000	220070000	259080000	46420	2336	43698	281003;281004;281005;281006;281007;281008;281009;281010	376908;376909;376910;376911;376912;376913;376914;376915;376916;376917;376918;376919;376920	376917			13	
SLINPDR	0	Unmodified	813.43447	0.43446642	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	20.616	20.219	2	0.017903	16394	160511_QHF_FH_JSI10i_3	60.76	23.114			0.95804	0.89693	39.255	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4146	1.662	NaN	1	0	Median	0.95804	0.89693	NaN	1	0	Median	0.77048	0.80167	NaN	1	0	Median	198580000	105070000	93504000	0	0	0	43824000	20095000	23729000	95375000	48746000	46629000	59379000	36233000	23146000	46421	1945	43699	281011;281012;281013	376921	376921			1	
SLIPSWNK	1	Unmodified	943.51272	0.51271674	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	58.284	57.172	2	0.00078223	49150	160511_QHF_FH_JSI12i_3	98.299	62.419			1.0894	1.124	1.1614	3	0	Median	1.3606	1.1095	NaN	1	0	Median	0.95286	1.1355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0894	1.124	NaN	1	0	Median	386210000	180870000	205340000	87354000	35437000	51917000	92624000	55554000	37070000	0	0	0	206230000	89883000	116350000	46422	3536	43700	281014;281015;281016	376922;376923	376923			2	
SLIPSYIR	0	Unmodified	947.54402	0.54401687	1175	P20340;Q9NRW1	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		4	2	1	1	58.836	57.785	2	0.0013898	48550	160511_QHF_FH_JSI10i_3	85.064	39.346			0.85021	0.87615	17.639	5	1	Median	1.2355	1.0523	25.403	2	1	Median	0.67854	0.81913	NaN	1	0	Median	0.85021	0.84138	NaN	1	0	Median	0.78987	0.87615	NaN	1	0	Median	560440000	291900000	268540000	236340000	104450000	131890000	144620000	83706000	60909000	101350000	53798000	47554000	78132000	49943000	28189000	46423	1175	43701	281017;281018;281019;281020;281021;281022;281023;281024	376924;376925;376926;376927;376928;376929;376930;376931;376932;376933;376934;376935	376925			12	
SLIQFMK	1	Unmodified	865.47316	0.47316011	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.168	61.345	2	0.006915	54281	160511_QHF_FH_JSI11i_3	89.369	72.442			1.0272	1.0147	2.8173	4	0	Median	1.2434	1.0163	NaN	1	0	Median	0.83703	1.013	NaN	1	0	Median	1.02	0.97028	NaN	1	0	Median	1.0345	1.0376	NaN	1	0	Median	469970000	220950000	249020000	121350000	57253000	64092000	79082000	43792000	35290000	108280000	44907000	63370000	161270000	74996000	86272000	46424	594	43702	281025;281026;281027;281028	376936;376937;376938	376936			3	
SLISMDEINK	1	Unmodified	1148.5747	0.57472465	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	2	3	56.444	55.707	2	1.9788E-11	47749	160511_QHF_FH_JSI12i_2	152.34	75.283			1.7189	1.7974	31.253	8	6	Median	1.8	1.5813	NaN	1	1	Median	2.0095	2.431	44.781	2	1	Median	2.3352	2.2722	20.567	2	2	Median	1.6414	1.8239	19.433	3	2	Plateau	902000000	299460000	602530000	103370000	21505000	81867000	209160000	81382000	127780000	302160000	88760000	213400000	287300000	107820000	179480000	46425	4292	43703	281029;281030;281031;281032;281033;281034;281035;281036	376939;376940;376941;376942;376943;376944;376945;376946;376947	376940			9	
SLISVIHLITAAR	0	Unmodified	1392.8453	0.84528426	195	O14735	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	2	2		89.768	81.497	2;3	6.9131E-08	46829	160513_QHF_FH_JSI10Kac_6	141.54	100.25			1.0602	1.0408	47.079	4	3	Median	1.6422	1.3965	NaN	1	0	Median	0.65532	0.77571	NaN	1	1	Median	1.109	1.0999	69.933	2	2	Median	NaN	NaN	NaN	0	0	Median	479920000	249880000	230050000	61120000	28532000	32588000	341420000	182830000	158590000	77387000	38517000	38870000	0	0	0	46426	195	43704	281037;281038;281039;281040;281041;281042	376948;376949;376950;376951;376952;376953;376954	376953			7	
SLITSIR	0	Unmodified	788.4756	0.47560295	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	2	1	42.917	36.504	2	0.011879	29788	160511_QHF_FH_JSI9i_3	76.035	0.84527			0.95179	0.9675	14.004	6	1	Median	1.2041	0.99959	11.515	2	1	Median	0.93182	1.1216	NaN	1	0	Median	0.88609	0.84607	15.635	2	0	Median	0.9234	0.99056	NaN	1	0	Median	442350000	208000000	234350000	272200000	126330000	145870000	26060000	13208000	12852000	136570000	64510000	72062000	7516200	3947700	3568400	46427	5628	43705	281043;281044;281045;281046;281047;281048	376955;376956;376957	376957			3	
SLITTHHLMVYGNER	0	Unmodified	1769.8883	0.88828807	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	3	1	2	53.444	44.237	2;3;4	2.5552E-25	24259	160513_QHF_FH_JSI10Kac_6	160.48	134.76			0.94686	1.0269	21.613	9	0	Median	1.7414	1.4707	30.463	3	0	Median	0.8964	1.05	12.625	3	0	Plateau	1.165	1.1356	NaN	1	0	Median	0.93247	1.0201	0.94456	2	0	Median	373810000	175280000	198530000	98247000	36918000	61329000	217600000	110120000	107480000	32157000	15395000	16762000	25804000	12844000	12960000	46428	2425	43706	281049;281050;281051;281052;281053;281054;281055;281056;281057	376958;376959;376960;376961;376962;376963;376964;376965;376966;376967;376968;376969	376966			11	
SLITTHHLMVYGNER	0	Oxidation (M)	1785.8832	0.88320269	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									5		3		2	46.581	37.626	3;4	0.0027009	19805	160513_QHF_FH_JSI12Kac_6	48.177	38.857			0.78944	0.95419	15.679	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.92035	1.1078	21.109	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9317	1.0194	NaN	1	0	Median	31703000	18755000	12948000	0	0	0	27742000	16119000	11622000	0	0	0	3961200	2635500	1325800	46429	2425	43706	281058;281059;281060;281061;281062	376970;376971;376972;376973;376974	376970		1949	5	
SLIVAGLGDGSIR	0	Unmodified	1256.7089	0.70885036	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		67.132	67.132	2	0.037343	59786	160511_QHF_FH_JSI11i_3	67.385	17.572			1.6167	1.5377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6167	1.5377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25147000	10076000	15072000	0	0	0	0	0	0	25147000	10076000	15072000	0	0	0	46430	3497	43707	281063	376975	376975			0	
SLIVEGK	1	Unmodified	744.43815	0.43815481	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.81		5					3			2	2	2	2	27.325	23.284	2	0.013326	20347	160511_QHF_FH_JSI10i_2	67.981	8.9997			0.87177	0.85588	22.1	8	1	Median	1.1988	1.0038	45.614	2	1	Median	0.68786	0.83006	3.5662	2	0	Median	1.0041	1.0088	22.476	2	0	Median	0.85566	0.95832	17.957	2	0	Median	3664800000	1639100000	2025700000	971280000	385280000	586000000	531080000	338470000	192610000	1360800000	550920000	809830000	801660000	364430000	437230000	46431	1444	43708	281064;281065;281066;281067;281068;281069;281070;281071	376976;376977;376978;376979;376980;376981;376982;376983;376984;376985	376985			10	
SLIVEGKR	1	Unmodified	900.53927	0.53926584	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		15.805	15.045	2;3	0.0062181	12096	160511_QHF_FH_JSI10i_3	63.565	33.38			1.6114	0.92674	20.232	4	0	Linear	1.3638	1.0991	4.9377	2	0	Median	0.69696	0.80917	NaN	1	0	Median	0.80591	0.75181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	347420000	172150000	175280000	237470000	109270000	128200000	42837000	21627000	21210000	67117000	41245000	25872000	0	0	0	46432	1444	43709	281072;281073;281074;281075	376986;376987;376988;376989	376986			4	
SLIWTLLK	1	Unmodified	972.6008	0.60080346	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	88.81	85.938	2	0.0027636	79771	160511_QHF_FH_JSI12i_3	85.064	66.333			0.58439	0.65289	2.3794	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56433	0.66397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60516	0.642	NaN	1	1	Median	92253000	59386000	32867000	0	0	0	79336000	53169000	26166000	0	0	0	12917000	6216700	6700500	46433	4560	43710	281076;281077	376990;376991	376990			2	
SLKAYGELPEHAK	2	Acetyl (K)	1483.7671	0.76709352	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		52.518	42.279	3	0.021479	22931	160513_QHF_FH_JSI11Kac_6	44.807	32.387			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8806700	8806700	0	0	0	0	0	0	0	8806700	8806700	0	0	0	0	46434	1608	43711	281078;281079	376992;376993	376992	1632		2	
SLKDEDVLQK	2	Unmodified	1173.6241	0.62411768	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							1	1	5	5	27.187	26.635	2;3	1.3385E-07	22654	160511_QHF_FH_JSI11i_3	182.71	150.78			0.88737	0.93371	76.373	12	12	Median	0.62607	0.52735	NaN	1	1	Median	0.23422	0.28945	NaN	1	1	Median	1.1213	1.1014	83.259	5	5	Median	1.1923	1.3562	59.653	5	5	Median	1011200000	533020000	478170000	72633000	43923000	28710000	86985000	66446000	20539000	387230000	189410000	197820000	464340000	233240000	231100000	46435	5141	43712	281080;281081;281082;281083;281084;281085;281086;281087;281088;281089;281090;281091	376994;376995;376996;376997;376998;376999;377000;377001;377002;377003;377004;377005	376994			12	
SLKDEDVLQK	2	Acetyl (K)	1215.6347	0.63468237	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	53.682	44.424	2	0.016406	23770	160513_QHF_FH_JSI12Kac_3	54.539	37.103			0.76084	0.86962	19.729	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63475	0.75638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91197	0.9998	NaN	1	0	Median	57692000	34492000	23200000	0	0	0	23347000	15695000	7651900	0	0	0	34344000	18797000	15548000	46436	5141	43712	281092;281093	377006;377007	377006	3323		1	
SLKHSPEDPEK	2	Acetyl (K)	1307.6357	0.635745	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	23.323	14.701	3	0.0012643	9648	160513_QHF_FH_JSI10Kac_4	61.375	51.688			0.86427	0.96672	62.849	2	0	Median	NaN	NaN	NaN	0	0	Median	1.286	1.5077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58083	0.61986	NaN	1	0	Median	8603100	4872000	3731100	0	0	0	5172900	2878800	2294100	0	0	0	3430200	1993200	1437000	46437	2094	43713	281094;281095	377008;377009;377010;377011	377009	2204		4	
SLKLNTAEDAK	2	Acetyl (K)	1230.6456	0.6455814	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		44.089	33.872	2	0.0055105	20289	160513_QHF_FH_JSI11Kac_4	70.1	38.166			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1139100	1139100	0	0	0	0	0	0	0	1139100	1139100	0	0	0	0	46438	1578	43714	281096	377012	377012	1591		1	
SLKPDKPDSEEQAK	3	Unmodified	1570.7839	0.7838658	5255	Q9UBT7	CTNNAL1	Alpha-catulin	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			10.792	10.157	3	0.013102	7806	160511_QHF_FH_JSI10i_3	51.009	42.475			1.3491	1.5821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3491	1.5821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27037000	9892100	17145000	0	0	0	27037000	9892100	17145000	0	0	0	0	0	0	46439	5255	43715	281097	377013	377013			1	
SLKPDSVR	1	Unmodified	900.50288	0.50288033	338	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			10.64	9.9673	3	0.013939	7618	160511_QHF_FH_JSI10i_3	37.191	22.04			1.0966	1.0623	13.803	2	0	Median	1.2048	0.96353	NaN	1	0	Median	0.99804	1.1712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	473690000	244820000	228860000	261260000	116210000	145050000	212420000	128610000	83810000	0	0	0	0	0	0	46440	338	43716	281098;281099	377014;377015;377016	377014			3	
SLKPGALSNSESIPTIDGLR	1	Unmodified	2054.1008	0.10078326	712	O95630	STAMBP	STAM-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		69.369	67.889	3	1.0637E-06	60195	160511_QHF_FH_JSI11i_3	86.748	76.584			1.0489	1.0061	10.634	2	0	Median	1.1746	0.93318	NaN	1	0	Median	0.93656	1.0846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93348000	41965000	51383000	51019000	23300000	27719000	42329000	18665000	23664000	0	0	0	0	0	0	46441	712	43717	281100;281101;281102	377017;377018;377019;377020;377021;377022;377023	377017			7	
SLLAGLLK	1	Unmodified	813.53239	0.53238955	1378	P31751	AKT2	RAC-beta serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.414	72.614	2	0.0014339	61014	160511_QHF_FH_JSI10i_3	89.55	35.025			1.0011	0.97921	13.39	4	0	Median	1.109	0.91115	NaN	1	0	Median	0.90367	1.0524	NaN	1	0	Median	1.1591	1.0927	NaN	1	0	Median	0.80879	0.81735	NaN	1	0	Median	268490000	139400000	129090000	67136000	32326000	34810000	57750000	32267000	25482000	57775000	31465000	26310000	85834000	43346000	42488000	46442	1378	43718	281103;281104;281105;281106	377024;377025;377026;377027;377028;377029;377030;377031;377032;377033;377034;377035;377036	377027			13	
SLLATMK	1	Unmodified	762.43096	0.43096094	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	3	1	1	34.347	33.481	2	0.0097021	27794	160511_QHF_FH_JSI10i_3	67.981	32.875			1.705	1.7491	47.802	5	5	Median	3.5294	2.9105	NaN	1	1	Median	0.86046	1.0277	22.21	2	2	Median	2.2139	2.2307	NaN	1	1	Median	1.705	1.7491	NaN	1	1	Median	1460300000	457870000	1002400000	296380000	59414000	236960000	452630000	191510000	261120000	339510000	90561000	248950000	371750000	116390000	255360000	46443	1085	43719	281107;281108;281109;281110;281111;281112	377037;377038;377039;377040;377041;377042	377038			6	
SLLAWVAAK	1	Unmodified	957.56475	0.56475231	245	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		76.186	75.112	2	4.8075E-05	63111	160511_QHF_FH_JSI10i_3	98.299	72.562			0.99251	1.0384	50.589	4	2	Median	1.1211	0.95209	85.019	2	2	Median	0.78047	0.90568	NaN	1	0	Median	1.2622	1.1906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63474000	27611000	35862000	21572000	8670000	12902000	14657000	7224300	7432400	27245000	11717000	15528000	0	0	0	46444	245	43720	281113;281114;281115;281116	377043;377044;377045;377046	377044			4	
SLLDANFEPGKK	2	Unmodified	1317.6929	0.69286595	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	47.873	47.633	2;3	3.707E-05	40669	160511_QHF_FH_JSI12i_3	90.05	62.308			0.5331	0.54365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5331	0.54365	NaN	1	1	Median	244890000	177840000	67054000	0	0	0	0	0	0	0	0	0	244890000	177840000	67054000	46445	4152	43721	281117;281118	377047;377048	377048			2	
SLLDASEEAIK	1	Unmodified	1174.6081	0.60813326	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	54.362	53.595	2	5.9766E-08	48784	160511_QHF_FH_JSI12i_1	125.97	81.62			0.74417	0.75464	29.251	6	0	Median	0.6847	0.57593	41.929	2	0	Median	0.54019	0.65005	42.091	2	0	Median	0.75856	0.73509	NaN	1	0	Median	0.75557	0.77507	NaN	1	0	Median	840870000	449970000	390900000	263290000	124700000	138590000	238120000	131880000	106240000	166100000	102580000	63525000	173370000	90818000	82547000	46446	1139	43722	281119;281120;281121;281122;281123;281124	377049;377050;377051;377052;377053;377054;377055	377052			7	
SLLDASEEAIKK	2	Unmodified	1302.7031	0.70309628	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.61		9	4				1	4		3	3	5	7	50.985	47.432	2;3	3.9059E-06	40454	160511_QHF_FH_JSI12i_3	113.24	91.008			1.1903	1.2621	34.441	18	12	Median	1.7332	1.4889	33.489	3	3	Plateau	1.2815	1.5776	20.895	3	2	Plateau	1.1451	1.1455	40.852	5	4	Median	1.2447	1.305	40.36	7	3	Median	2360200000	1154000000	1206200000	427170000	180960000	246210000	421080000	220200000	200880000	271870000	133040000	138830000	1240100000	619820000	620300000	46447	1139	43723	281125;281126;281127;281128;281129;281130;281131;281132;281133;281134;281135;281136;281137;281138;281139;281140;281141;281142	377056;377057;377058;377059;377060;377061;377062;377063;377064;377065;377066;377067;377068;377069;377070;377071;377072;377073;377074	377070			19	
SLLDFLPR	0	Unmodified	959.54402	0.54401687	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	93.092	92.604	2	0.00018193	82397	160511_QHF_FH_JSI11i_3	122.13	66.687			0.93233	0.98462	10.123	8	0	Median	1.2864	1.0865	11.284	2	0	Median	0.87405	1.0405	9.4234	2	0	Median	0.96548	0.97397	3.1549	2	0	Median	0.85367	0.88335	2.088	2	0	Median	753590000	384240000	369350000	121000000	51301000	69701000	163040000	85025000	78013000	221710000	116850000	104860000	247840000	131060000	116780000	46448	1814	43724	281143;281144;281145;281146;281147;281148;281149;281150	377075;377076;377077;377078;377079;377080;377081;377082;377083;377084;377085;377086;377087;377088;377089;377090;377091;377092;377093;377094;377095;377096;377097;377098;377099;377100;377101;377102;377103	377076			29	
SLLDGEGPQAVGGQDVAFSR	0	Unmodified	2001.9756	0.97558275	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	68.224	67.791	2	1.5404E-35	61630	160511_QHF_FH_JSI11i_1	197.47	164.52			1.3161	1.2607	30.813	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.61171	0.69419	NaN	1	1	Median	1.3305	1.2762	NaN	1	0	Median	1.0129	1.0218	NaN	1	0	Median	79959000	40313000	39647000	0	0	0	23740000	14917000	8822900	31434000	12142000	19291000	24786000	13253000	11532000	46449	11	43725	281151;281152;281153	377104;377105;377106;377107;377108	377104			5	
SLLDGNIDSSQYEDSLR	0	Unmodified	1910.8858	0.88576469	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	67.892	67.215	2	1.013E-10	59662	160511_QHF_FH_JSI9i_1	145.71	118.3			0.63545	0.63135	8.1583	3	1	Median	0.84101	0.69994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63545	0.63135	NaN	1	0	Median	0.60134	0.59582	NaN	1	1	Median	62612000	41450000	21162000	22733000	11634000	11099000	0	0	0	26750000	19986000	6763800	13129000	9830400	3298800	46450	4247	43726	281154;281155;281156	377109;377110;377111;377112	377111			4	
SLLDILTDPSK	1	Unmodified	1200.6602	0.66016884	4220	Q96RN5	MED15	Mediator of RNA polymerase II transcription subunit 15	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			89.086	88.558	2	0.000285	78787	160511_QHF_FH_JSI10i_2	90.108	61.71			7.0111	8.6592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7.0111	8.6592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100120000	9867500	90254000	0	0	0	100120000	9867500	90254000	0	0	0	0	0	0	46451	4220	43727	281157	377113	377113			1	
SLLEGEGSSGGGGR	0	Unmodified	1261.5899	0.58985744	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				2	0		1								1				20.018	19.089	2	0.0028187	16134	160511_QHF_FH_JSI9i_2	68.069	58.288		+	0.49342	0.42696	NaN	1	1	Median	0.49342	0.42696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13997000	10448000	3548800	13997000	10448000	3548800	0	0	0	0	0	0	0	0	0	46452	56	43728	281158	377114	377114			1	
SLLEIQQEEAR	0	Unmodified	1314.6779	0.67794416	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	47.368	46.38	2	4.6951E-05	40443	160511_QHF_FH_JSI9i_2	96.009	72.633			1.0303	1.0562	60.723	3	0	Median	0.4423	0.38322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0433	1.0562	NaN	1	0	Median	1.0303	1.1352	NaN	1	0	Median	261490000	129320000	132170000	79016000	40018000	38998000	0	0	0	123820000	62249000	61572000	58651000	27051000	31599000	46453	3172	43729	281159;281160;281161	377115;377116	377116			1	
SLLELAR	0	Unmodified	800.4756	0.47560295	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	49.519	48.601	2	0.0055967	41441	160511_QHF_FH_JSI12i_3	94.262	22.241			1.2193	1.1916	19.088	8	2	Median	1.5724	1.281	20.502	2	0	Median	0.92703	1.1099	28.52	2	1	Median	1.2193	1.1795	11.719	2	1	Median	1.1147	1.1816	31.175	2	0	Median	3461200000	1621900000	1839300000	488540000	218890000	269650000	698840000	370740000	328100000	1194800000	496800000	698020000	1079000000	535470000	543530000	46454	1649	43730	281162;281163;281164;281165;281166;281167;281168;281169	377117;377118;377119;377120;377121;377122;377123;377124;377125;377126;377127;377128;377129	377128			13	
SLLELHK	1	Unmodified	838.49125	0.49125301	1794	P53350	PLK1	Serine/threonine-protein kinase PLK1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.963	30.898	2	0.040781	26042	160511_QHF_FH_JSI12i_3	46.994	14.384			0.61076	0.64587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61076	0.64587	NaN	1	0	Median	58858000	37366000	21492000	0	0	0	0	0	0	0	0	0	58858000	37366000	21492000	46455	1794	43731	281170	377130	377130			1	
SLLENDQLLSHGGQDLSADAFHR	0	Unmodified	2522.215	0.21497817	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			71.625	70.84	4	0.031597	62905	160511_QHF_FH_JSI10i_2	21.011	16.032			0.62688	0.77396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62688	0.77396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40088000	22406000	17682000	0	0	0	40088000	22406000	17682000	0	0	0	0	0	0	46456	5229	43732	281171	377131	377131			1	
SLLEPLMQGYWEWLVR	0	Unmodified	2019.0288	0.028804293	5733	Q9Y6K0	CEPT1	Choline/ethanolaminephosphotransferase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.816	93.096	2	6.8947E-63	54541	160513_QHF_FH_JSI10Kac_6	208.27	166.73			0.88428	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88428	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113460000	57629000	55827000	0	0	0	113460000	57629000	55827000	0	0	0	0	0	0	46457	5733	43733	281172	377132;377133	377132			2	
SLLEQYHLGLDQK	1	Unmodified	1542.8042	0.80420731	896	P08236	GUSB	Beta-glucuronidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.197	63.054	3	0.00013957	54466	160511_QHF_FH_JSI12i_3	85.45	65.696			0.57473	0.55705	87.593	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32744	0.29985	NaN	1	1	Median	1.0088	1.0349	NaN	1	1	Median	104960000	68938000	36022000	0	0	0	0	0	0	39044000	29336000	9708300	65916000	39602000	26314000	46458	896	43734	281173;281174	377134;377135	377135			2	
SLLESTYQR	0	Unmodified	1095.556	0.55603812	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.33	6.13		2						1		2	1			37.116	31.604	2	0.0050369	28007	160511_QHF_FH_JSI10i_2	57.59	29.416			1.0763	0.91716	23.317	2	2	Median	1.0763	0.91716	23.317	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50466000	21753000	28712000	50466000	21753000	28712000	0	0	0	0	0	0	0	0	0	46459	4247	43735	281175;281176;281177	377136;377137;377138	377138			3	
SLLETQYQNVR	0	Unmodified	1349.6939	0.69392858	3923	Q93015	NAT6	N-acetyltransferase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	43.506	42.374	2	0.00029981	36224	160511_QHF_FH_JSI12i_2	76.465	56.136			0.96253	1.1891	32.855	3	1	Median	1.6232	1.4079	NaN	1	0	Median	0.96253	1.1891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66968	0.74656	NaN	1	0	Median	76511000	37624000	38887000	19393000	7806100	11587000	29271000	13384000	15887000	0	0	0	27847000	16434000	11413000	46460	3923	43736	281178;281179;281180	377139;377140;377141;377142	377139			4	
SLLEVVVLSR	0	Unmodified	1113.6758	0.67575932	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			83.761	82.515	2	0.0011267	69154	160511_QHF_FH_JSI10i_3	72.643	24.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46461	21	43737	281181	377143	377143			1	
SLLEYWK	1	Unmodified	937.49092	0.49091866	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	65.942	65.043	2	0.011756	57189	160511_QHF_FH_JSI9i_2	60.76	34.866			0.81662	0.97843	8.9343	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81662	0.97843	NaN	1	0	Median	1.0826	1.0733	NaN	1	0	Median	0.79413	0.89773	NaN	1	0	Median	153270000	89708000	63560000	0	0	0	42699000	25259000	17440000	63869000	38690000	25179000	46701000	25759000	20942000	46462	2947	43738	281182;281183;281184;281185	377144;377145;377146	377144			3	
SLLGDSAPTLHLNK	1	Unmodified	1464.7936	0.79364262	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							1	2	3	4	58.944	58.45	2;3	2.4728E-06	51704	160511_QHF_FH_JSI11i_3	119.87	101.03			1.0792	1.1422	24.827	10	7	Median	1.3345	1.141	NaN	1	1	Median	1.2492	1.4938	35.694	2	0	Median	1.0533	1.0776	20.761	3	2	Median	0.99106	1.0246	24.15	4	4	Median	1929500000	889800000	1039700000	88167000	37597000	50570000	145600000	71396000	74199000	628610000	277660000	350960000	1067100000	503150000	563970000	46463	1774	43739	281186;281187;281188;281189;281190;281191;281192;281193;281194;281195	377147;377148;377149;377150;377151;377152;377153;377154;377155	377147			9	
SLLGDSAPTLHLNKGTPSQSPVVGR	1	Acetyl (K)	2572.3609	0.36091413	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.64	68.322	3	7.7508E-07	37328	160513_QHF_FH_JSI11Kac_6	119.02	77.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9162900	9162900	0	0	0	0	0	0	0	9162900	9162900	0	0	0	0	46464	1774	43740	281196	377156	377156	1788		1	
SLLGGNIR	0	Unmodified	828.48175	0.48175096	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			34.16	32.745	2	0.0070234	27293	160511_QHF_FH_JSI10i_3	60.788	6.2627			1.0375	1.0018	21.601	2	0	Median	1.0771	0.85993	NaN	1	0	Median	0.99941	1.1672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	257380000	118220000	139160000	159700000	67879000	91821000	97676000	50338000	47337000	0	0	0	0	0	0	46465	707	43741	281197;281198	377157;377158	377157			2	
SLLGKDVLFLK	2	Unmodified	1231.754	0.75400964	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.993	76.22	3	0.00027324	62754	160511_QHF_FH_JSI9i_3	79.659	72.771			0.36149	0.34997	52.383	4	4	Median	0.47199	0.39567	NaN	1	1	Median	0.27686	0.30955	NaN	1	1	Median	0.22253	0.21453	NaN	1	1	Median	0.73523	0.74523	NaN	1	1	Median	73506000	46903000	26602000	19279000	12276000	7003400	20151000	15368000	4783100	5086600	4563200	523470	28989000	14697000	14292000	46466	775;866	43742	281199;281200;281201;281202	377159;377160;377161;377162	377161			4	
SLLGKDVLFLK	2	Acetyl (K)	1273.7646	0.76457433	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	88.946	80.78	2	3.4349E-27	44649	160513_QHF_FH_JSI11Kac_6	186.72	121.42			0.52106	0.54522	86.89	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87521	1.0079	NaN	1	0	Median	0.31022	0.29494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	927440000	673230000	254210000	0	0	0	110090000	58461000	51628000	764710000	562130000	202580000	52641000	52641000	0	46467	775;866	43742	281203;281204;281205	377163;377164;377165;377166;377167	377163	397		5	
SLLGLDSGELQSGPESSSSPGVHVR	0	Unmodified	2494.23	0.22995953	1686	P49815	TSC2	Tuberin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	2	1		67.966	67.394	3	3.9196E-17	59851	160511_QHF_FH_JSI10i_2	127.28	114.09			0.97193	0.89979	24.354	3	3	Plateau	1.6192	1.387	NaN	1	1	Median	0.74372	0.92054	NaN	1	1	Median	0.97193	0.89979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92729000	40408000	52322000	20744000	5580900	15163000	27564000	17370000	10194000	44422000	17457000	26965000	0	0	0	46468	1686	43743	281206;281207;281208;281209	377168;377169;377170;377171;377172	377170			5	
SLLGMLSDLQVYK	1	Unmodified	1465.7851	0.78505177	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	98.81	95.317	2	1.7492E-116	82561	160511_QHF_FH_JSI9i_3	271.65	250.65			0.91622	0.88496	12.125	7	0	Median	1.153	0.95131	10.224	2	0	Median	0.73341	0.86301	2.2095	2	0	Median	1.0604	0.99737	23.479	2	0	Median	0.91622	0.91655	NaN	1	0	Median	3647100000	1924000000	1723200000	580650000	259370000	321280000	1374400000	807480000	566960000	857490000	442990000	414500000	834580000	414140000	420440000	46469	2456	43744	281210;281211;281212;281213;281214;281215;281216	377173;377174;377175;377176;377177;377178;377179;377180;377181;377182;377183	377178			11	
SLLGMLSDLQVYK	1	Oxidation (M)	1481.78	0.7799664	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	93.141	92.349	2	7.0588E-06	75832	160511_QHF_FH_JSI9i_3	126.19	99.68			1.0602	1.4765	29.307	4	1	Linear	1.5432	1.2447	38.791	2	0	Median	0.97493	1.103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83725	0.83368	NaN	1	1	Median	101970000	45921000	56046000	50744000	19019000	31725000	23224000	11311000	11913000	0	0	0	27998000	15591000	12407000	46470	2456	43744	281217;281218;281219;281220;281221	377184;377185;377186;377187;377188;377189	377188		1961	6	
SLLGPYLVFMASTINGYEGTGR	0	Unmodified	2345.1726	0.172568	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		98.292	89.942	3	5.0241E-19	51181	160513_QHF_FH_JSI9Kac_6	137.12	128.3			1.1327	1.1403	13.024	4	2	Median	1.3589	1.1624	16.872	2	2	Median	1.0653	1.2604	NaN	1	0	Median	1.0653	1.0226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	453630000	219010000	234610000	178370000	81384000	96987000	166640000	78180000	88456000	108620000	59451000	49168000	0	0	0	46471	4623	43745	281222;281223;281224;281225	377190;377191;377192;377193;377194	377193			5	
SLLGQNVSTK	1	Unmodified	1045.5768	0.57677356	4203	Q96Q05	TRAPPC9	Trafficking protein particle complex subunit 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		29.421	29.421	2	0.053744	25417	160511_QHF_FH_JSI11i_3	42.395	1.3658			0.71065	0.67456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71065	0.67456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17643000	10532000	7111600	0	0	0	0	0	0	17643000	10532000	7111600	0	0	0	46472	4203	43746	281226	377195	377195			1	
SLLGVKENNK	2	Acetyl (K)	1142.6295	0.62953741	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS		By MS/MS	14.5	0.5							2	2		1	2		1	47.136	36.903	2	0.0019384	18986	160513_QHF_FH_JSI10Kac_5	84.213	53.958			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11246000	11246000	0	2030800	2030800	0	6850000	6850000	0	0	0	0	2365300	2365300	0	46473	2650	43747	281227;281228;281229;281230	377196;377197;377198;377199	377199	2612;2613		4	
SLLGVKENNKK	3	Acetyl (K)	1270.7245	0.72450043	2650	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	36.772	27.822	2;3	0.0017544	15641	160513_QHF_FH_JSI10Kac_6	76.522	39.541			0.87002	0.88801	16.93	4	0	Median	0.86949	0.72015	NaN	1	0	Median	0.70357	0.8302	NaN	1	0	Median	1.0764	1.0655	NaN	1	0	Median	0.87056	0.94985	NaN	1	0	Median	46371000	23831000	22539000	6248100	3289900	2958200	20639000	11312000	9327900	6866800	2789900	4076800	12616000	6440000	6176400	46474	2650	43748	281231;281232;281233;281234;281235;281236	377200;377201;377202;377203;377204	377203	2612;2613		5	
SLLHGDFHAFSAGPGLFSYIR	0	Unmodified	2291.1487	0.14873651	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	4	3	3	4	86.977	78.596	2;3;4	2.8609E-106	41852	160513_QHF_FH_JSI12Kac_6	231.93	205.12			1.0602	1.0636	9.3099	14	6	Median	1.3558	1.1883	7.9975	4	2	Median	0.83897	0.95758	6.7213	3	1	Plateau	1.1541	1.082	4.4932	3	1	Plateau	0.95965	0.99474	1.8781	4	2	Median	26113000000	12077000000	14036000000	7336300000	3192900000	4143400000	9028500000	4406700000	4621900000	3711300000	1594700000	2116500000	6036600000	2882900000	3153700000	46475	895	43749	281237;281238;281239;281240;281241;281242;281243;281244;281245;281246;281247;281248;281249;281250	377205;377206;377207;377208;377209;377210;377211;377212;377213;377214;377215;377216;377217;377218;377219	377212			15	
SLLHMWNLHLK	1	Unmodified	1390.7544	0.75436077	5614	Q9Y485	DMXL1	DmX-like protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.041	68.67	4	2.8001E-06	37349	160513_QHF_FH_JSI10Kac_6	102.52	87.38			0.69197	0.81725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69197	0.81725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23368000	14507000	8861100	0	0	0	23368000	14507000	8861100	0	0	0	0	0	0	46476	5614	43750	281251	377220;377221	377220			2	
SLLIDFFR	0	Unmodified	1009.5597	0.55966693	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	100.38	100.29	2	0.0007303	89045	160511_QHF_FH_JSI11i_3	98.997	51.93			0.94159	1.1454	18.064	4	0	Linear	1.0881	0.88575	NaN	1	0	Median	0.84439	0.98544	NaN	1	0	Median	1.05	0.98777	NaN	1	0	Median	0.66238	0.67294	NaN	1	0	Median	153790000	80220000	73575000	29310000	15258000	14051000	37559000	19770000	17789000	58079000	27406000	30673000	28846000	17786000	11061000	46477	4762	43751	281252;281253;281254;281255	377222;377223;377224	377222			3	
SLLIGVFK	1	Unmodified	875.54804	0.54803961	5210;4860	Q9HCK8;Q8TD26;Q9P2D1	CHD8;CHD6;CHD7	Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	77.471	72.898	2	0.002025	65216	160511_QHF_FH_JSI12i_3	91.906	59.436			1.0347	1.0447	9.001	8	0	Median	1.3573	1.1343	1.004	2	0	Median	0.8766	1.0065	1.145	2	0	Median	0.99839	0.94556	12.481	2	0	Median	1.0347	1.0873	4.0261	2	0	Median	374240000	171950000	202290000	114470000	45743000	68728000	78476000	42272000	36203000	87488000	45545000	41943000	93802000	38387000	55415000	46478	4860;5210	43752	281256;281257;281258;281259;281260;281261;281262;281263	377225;377226;377227;377228;377229;377230;377231;377232;377233;377234;377235;377236;377237;377238;377239;377240;377241;377242	377238			18	
SLLINAVEASCIR	0	Unmodified	1444.7708	0.77079869	1394;4000	Q96C36;P32322	PYCR2;PYCR1	Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase 1, mitochondrial	no	no	0	0	0	0	By matching	By MS/MS			7.33	6.13			2						1	1	2			77.683	74.828	2	1.9427E-05	39541	160513_QHF_FH_JSI10Kac_6	113.65	66.388			0.96601	0.98636	8.6869	3	0	Median	1.1511	0.92778	NaN	1	0	Median	0.89913	1.0422	7.7919	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68665000	35891000	32774000	18165000	8304500	9860900	50499000	27586000	22913000	0	0	0	0	0	0	46479	4000;1394	43753	281264;281265;281266	377243;377244	377244			2	
SLLIPYLDNLVK	1	Unmodified	1386.8123	0.8122528	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	1	2	2	3	100.96	99.707	2	9.2993E-11	90873	160511_QHF_FH_JSI11i_3	145.89	126.12			0.97427	1.061	21.72	8	0	Median	0.87337	0.73399	NaN	1	0	Median	0.88099	1.0393	1.6022	2	0	Median	1.2317	1.2251	19.028	2	0	Median	0.99981	1.1284	19.704	3	0	Median	3417200000	1634700000	1782500000	436110000	205850000	230270000	958880000	530220000	428660000	904290000	395270000	509020000	1118000000	503370000	614580000	46480	127	43754	281267;281268;281269;281270;281271;281272;281273;281274	377245;377246;377247;377248;377249;377250;377251	377245			6	
SLLIPYLDNLVKHLHSIMVLK	2	Acetyl (K)	2487.4287	0.4287231	127	O00410	IPO5	Importin-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		99.57	90.153	4	2.5684E-06	51725	160513_QHF_FH_JSI11Kac_6	76.186	55.181			0.48499	0.46116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48499	0.46116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49129000	38364000	10765000	0	0	0	0	0	0	49129000	38364000	10765000	0	0	0	46481	127	43755	281275	377252	377252	83		1	
SLLIQELSK	1	Unmodified	1029.607	0.60701105	4420	Q9BTT4	MED10	Mediator of RNA polymerase II transcription subunit 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	63.096	62.953	2	0.0010634	55923	160511_QHF_FH_JSI11i_3	74.376	31.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46482	4420	43756	281276;281277	377253;377254	377253			2	
SLLLLAYLIR	0	Unmodified	1173.7485	0.74853033	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	97.571	89.249	2	3.1338E-26	50515	160513_QHF_FH_JSI11Kac_6	187.78	155.56			0.5774	0.51683	93.725	6	5	Median	0.67594	0.56938	NaN	1	0	Median	0.54779	0.64322	118.32	2	2	Median	1.1116	1.0571	114.89	2	2	Median	0.20713	0.21798	NaN	1	1	Median	3642700000	2016800000	1625900000	834770000	451170000	383600000	1893800000	1179200000	714670000	471000000	195010000	275990000	443140000	191480000	251660000	46483	2558	43757	281278;281279;281280;281281;281282;281283;281284	377255;377256;377257;377258;377259;377260;377261;377262	377256			8	
SLLLLVK	1	Unmodified	784.54223	0.54222595	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		70.942	69.962	2	0.0084674	62059	160511_QHF_FH_JSI11i_3	86.086	21.31			1.0048	0.97295	52.714	6	6	Median	1.1583	0.97295	60.305	2	2	Median	0.80697	0.92687	70.939	2	2	Median	1.0628	1.0095	71.772	2	2	Median	NaN	NaN	NaN	0	0	Median	71915000	33210000	38705000	25106000	10822000	14285000	24293000	12677000	11616000	22515000	9711300	12804000	0	0	0	46484	4425	43758	281285;281286;281287;281288;281289;281290	377263;377264;377265;377266;377267;377268	377263			6	
SLLLSVNAR	0	Unmodified	971.57638	0.57637963	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	60.085	50.796	2	0.00054753	27853	160513_QHF_FH_JSI10Kac_6	93.143	40.741			1.3718	1.2459	15.146	4	0	Median	1.3366	1.137	NaN	1	0	Median	0.96149	1.1275	NaN	1	0	Median	1.4079	1.3651	NaN	1	0	Median	1.4338	1.5415	NaN	1	0	Median	122930000	59513000	63414000	11834000	4732300	7101800	70263000	37436000	32827000	23056000	9966100	13090000	17774000	7378300	10395000	46485	2569	43759	281291;281292;281293;281294	377269;377270;377271;377272	377271			4	
SLLLTTIPQIGSTEWSETLHNLK	1	Unmodified	2580.3799	0.37991824	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.57	4.69		2	4						1	3	2	1	1	100.44	99.098	3	2.4302E-59	90529	160511_QHF_FH_JSI11i_3	215.98	211.72			0.96098	0.94876	20.701	7	0	Median	1.1419	0.94876	33.203	3	0	Median	0.80708	0.9548	4.2995	2	0	Median	0.96098	0.89962	NaN	1	0	Median	1.1105	1.1403	NaN	1	0	Median	2776000000	1447800000	1328300000	498870000	243270000	255590000	1125900000	611320000	514590000	845930000	437780000	408150000	305340000	155400000	149940000	46486	2354	43760	281295;281296;281297;281298;281299;281300;281301	377273;377274;377275;377276;377277;377278;377279;377280	377273			7	
SLLLTVSQYK	1	Unmodified	1150.6598	0.6597749	3706	Q8TCG1	KIAA1524	Protein CIP2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			64.723	63.22	2	0.00014967	52996	160511_QHF_FH_JSI10i_3	96.331	37.086			2.7669	2.6742	130.79	2	2	Median	8.4917	6.7426	NaN	1	1	Median	0.90158	1.0606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	208030000	45534000	162490000	163880000	23837000	140040000	44150000	21697000	22453000	0	0	0	0	0	0	46487	3706	43761	281302;281303	377281;377282	377281			2	
SLLLVPNGALK	1	Unmodified	1123.6965	0.69649476	3348	Q86VX2	COMMD7	COMM domain-containing protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	73.153	72.454	2	0.00081634	63569	160511_QHF_FH_JSI11i_2	79.906	32.709			0.67427	0.76977	33.612	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76967	0.97629	NaN	1	1	Median	0.59069	0.60693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33183000	20779000	12404000	0	0	0	11886000	7085300	4800300	21297000	13694000	7603300	0	0	0	46488	3348	43762	281304;281305;281306	377283;377284;377285	377284			3	
SLLLVPSALSLLLALLLPHCQK	1	Unmodified	2398.4386	0.43855951	3596	Q8NBM4	UBAC2	Ubiquitin-associated domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.26	99.539	3	1.2925E-08	58956	160513_QHF_FH_JSI10Kac_6	136.58	128.19			0.28444	0.33394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28444	0.33394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46080000	36457000	9623500	0	0	0	46080000	36457000	9623500	0	0	0	0	0	0	46489	3596	43763	281307	377286	377286			1	
SLLMISENVK	1	Acetyl (Protein N-term)	1174.6268	0.62676022	530	O75449	KATNA1	Katanin p60 ATPase-containing subunit A1	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			90.848	90.788	2	0.0035854	82379	160511_QHF_FH_JSI10i_1	46.891	33.838			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46490	530	43764	281308	377287	377287			1	
SLLNDTQR	0	Unmodified	945.48796	0.48795855	5776				yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	20.153	19.191	2	0.0085265	16424	160511_QHF_FH_JSI10i_2	66.682	12.133	+		0.81943	0.94121	28.261	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63665	0.77072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0547	1.1494	NaN	1	1	Median	83277000	46425000	36852000	0	0	0	52180000	31816000	20363000	0	0	0	31098000	14609000	16489000	46491	5776	43765	281309;281310	377288;377289	377289			2	
SLLNKPK	2	Acetyl (Protein N-term)	840.5069	0.50690308	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	25.767	25.061	2	0.0024627	21509	160511_QHF_FH_JSI9i_1	54.525	29.527			1.0253	1.0046	100.41	9	1	Median	1.1522	0.96865	5.1539	2	0	Median	0.80221	0.96767	6.6902	2	0	Median	0.98738	0.97356	7.7045	2	0	Median	7.7476	8.3086	139.59	3	1	Median	3210100000	1524500000	1685600000	666330000	347950000	318380000	783360000	397090000	386280000	1014200000	459280000	554920000	746240000	320190000	426060000	46492	2002	43766	281311;281312;281313;281314;281315;281316;281317;281318;281319	377290;377291;377292;377293;377294;377295;377296;377297;377298;377299	377298			10	
SLLNKPK	2	Acetyl (K);Acetyl (Protein N-term)	882.51747	0.51746776	2002	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.4	0.49				3	2						1	2	2	60.57	51.11	2	0.0003103	20727	160513_QHF_FH_JSI12Kacf_1	67.035	13.481			0.84754	0.86146	13.764	4	0	Median	NaN	NaN	NaN	0	0	Median	0.87354	1.0127	NaN	1	0	Median	0.79136	0.77407	6.1473	2	0	Median	0.86917	0.91793	NaN	1	0	Median	82074000	45890000	36184000	0	0	0	21516000	12727000	8789400	33668000	18044000	15624000	26890000	15119000	11771000	46493	2002	43766	281320;281321;281322;281323;281324	377300;377301;377302;377303;377304;377305;377306;377307	377303	2029		8	
SLLNLLSSQEEDFNSK	1	Unmodified	1822.8949	0.89487281	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			4								2	2		89.942	89.591	2	3.0703E-07	79883	160511_QHF_FH_JSI11i_3	130.07	107.87			1.0867	0.79531	16.296	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.6535	0.79531	NaN	1	1	Median	0.94449	0.88973	21.147	2	2	Median	NaN	NaN	NaN	0	0	Median	30223000	15272000	14951000	0	0	0	6306200	4561500	1744600	23917000	10711000	13206000	0	0	0	46494	5034	43767	281325;281326;281327;281328	377308;377309;377310;377311	377308			4	
SLLNQCIEER	0	Unmodified	1260.6132	0.61323542	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	40.077	39.618	2	0.00050101	34036	160511_QHF_FH_JSI11i_2	72.643	66.33			1.0841	1.1075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0841	1.1075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28026000	13219000	14808000	0	0	0	0	0	0	28026000	13219000	14808000	0	0	0	46495	4094	43768	281329;281330;281331;281332	377312;377313;377314;377315	377314			4	
SLLNVSR	0	Unmodified	787.4552	0.45520186	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			30.313	28.945	2	0.019199	23569	160511_QHF_FH_JSI9i_3	58.716	13.755			1.3043	1.2773	2.9385	2	0	Median	1.6299	1.3041	NaN	1	0	Median	1.0438	1.251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233180000	102880000	130300000	154880000	63651000	91231000	78297000	39229000	39068000	0	0	0	0	0	0	46496	4171	43769	281333;281334	377316;377317;377318;377319	377318			4	
SLLPGCQSVISR	0	Unmodified	1315.6918	0.69182009	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.315	52.757	2	0.043435	44100	160511_QHF_FH_JSI10i_3	43.512	6.0366			1.0167	1.1929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0167	1.1929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26959000	12982000	13978000	0	0	0	26959000	12982000	13978000	0	0	0	0	0	0	46497	706	43770	281335	377320	377320			1	
SLLPLSTSLDHR	0	Unmodified	1337.7303	0.73031409	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		61.318	60.559	3	1.2564E-05	50890	160511_QHF_FH_JSI10i_3	98.902	67.716			1.5202	1.5895	38.779	2	2	Median	NaN	NaN	NaN	0	0	Median	1.7914	2.0909	NaN	1	1	Median	1.2901	1.2083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	562840000	182560000	380280000	0	0	0	232780000	76620000	156160000	330060000	105940000	224120000	0	0	0	46498	3736	43771	281336;281337	377321;377322	377322			2	
SLLPNYTMEGERPEEGVAGGLNR	0	Unmodified	2488.2016	0.20163629	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	1	2	1	67.446	66.778	3	1.7977E-14	55977	160511_QHF_FH_JSI10i_3	117.74	95.942			1.1765	1.0938	26.337	4	0	Median	1.3455	1.1561	NaN	1	0	Median	1.2767	1.4863	NaN	1	0	Median	1.0842	1.0348	NaN	1	0	Median	0.75871	0.78738	NaN	1	0	Median	234120000	117800000	116320000	80003000	36379000	43624000	33056000	17862000	15194000	82316000	44686000	37630000	38745000	18877000	19868000	46499	4352	43772	281338;281339;281340;281341;281342	377323;377324;377325;377326;377327;377328;377329	377326			7	
SLLQALNEVK	1	Unmodified	1113.6394	0.63937381	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	69.151	68.359	2	4.5717E-11	60619	160511_QHF_FH_JSI11i_3	148.32	100.47			0.75101	0.80908	23.58	7	1	Median	0.93317	0.77126	33.107	2	0	Median	0.82056	0.97648	10.036	2	1	Median	0.70299	0.68635	23.266	2	0	Median	0.6534	0.66406	NaN	1	0	Median	1936800000	1095200000	841630000	363780000	172760000	191020000	431790000	251030000	180750000	774480000	460910000	313570000	366780000	210490000	156290000	46500	2517	43773	281343;281344;281345;281346;281347;281348;281349	377330;377331;377332;377333;377334;377335;377336;377337;377338;377339;377340;377341;377342;377343	377331			14	
SLLQEAQNNLK	1	Unmodified	1256.6725	0.67246486	4791	Q9H8X2	IPPK	Inositol-pentakisphosphate 2-kinase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	51.413	50.363	2	0.00019818	44460	160511_QHF_FH_JSI11i_3	86.882	53.085			2.2003	1.8594	NaN	1	1	Median	2.2003	1.8594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53939000	25674000	28265000	53939000	25674000	28265000	0	0	0	0	0	0	0	0	0	46501	4791	43774	281350;281351;281352	377344;377345;377346	377344			3	
SLLQGTILQYVK	1	Unmodified	1361.7919	0.79185171	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	88.926	85.563	2	1.5603E-40	42186	160513_QHF_FH_JSI9Kac_6	202.56	171.95			0.9504	0.92739	14.996	6	0	Median	1.1011	0.93042	13.291	2	0	Median	0.91427	1.0625	NaN	1	0	Median	0.89382	0.85577	23.945	2	0	Median	0.84683	0.84847	NaN	1	0	Median	592080000	310150000	281920000	178740000	93466000	85273000	75906000	35164000	40743000	213090000	109430000	103660000	124350000	72097000	52250000	46502	3229;4066	43775	281353;281354;281355;281356;281357;281358	377347;377348;377349;377350;377351;377352;377353;377354;377355;377356	377354			9	
SLLQMVPLDEGASERPLQVPK	1	Unmodified	2306.2304	0.23041723	2179	Q01968	OCRL	Inositol polyphosphate 5-phosphatase OCRL-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			88.842	87.711	3	3.1185E-06	73371	160511_QHF_FH_JSI10i_3	90.972	73.148			0.64719	0.7595	39.044	3	3	Plateau	1.8789	1.6093	NaN	1	1	Median	0.71563	0.83509	13.418	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59282000	30861000	28420000	9027100	1788100	7239000	50255000	29073000	21181000	0	0	0	0	0	0	46503	2179	43776	281359;281360;281361	377357;377358;377359	377358			3	
SLLQQLENVTK	1	Unmodified	1271.7085	0.70851601	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	76.99	76.358	2	5.8188E-18	67871	160511_QHF_FH_JSI10i_2	158.79	90.055			0.9053	0.86039	24.2	5	0	Median	0.90929	0.80373	NaN	1	0	Median	0.8607	1.0264	43.313	2	0	Median	0.9053	0.86039	NaN	1	0	Median	0.89481	0.92897	NaN	1	0	Median	299030000	173170000	125870000	30944000	16830000	14114000	68098000	41739000	26359000	83487000	53355000	30132000	116510000	61241000	55264000	46504	5461	43777	281362;281363;281364;281365;281366	377360;377361;377362;377363;377364;377365;377366;377367;377368	377366			9	
SLLQSALDFLAGPGSLGGASGR	0	Acetyl (Protein N-term)	2115.096	0.096032235	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	1	0	0	By MS/MS				2	0		1								1				104.44	104.37	3	0.00097056	92152	160511_QHF_FH_JSI9i_2	46.578	37.414			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46505	229	43778	281367	377369	377369			1	
SLLQTTFLVDNKK	2	Unmodified	1505.8453	0.84534384	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		63.259	63.259	3	0.0013658	56229	160511_QHF_FH_JSI11i_3	60.937	41.359			0.55286	0.50637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55286	0.50637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39034000	27843000	11191000	0	0	0	0	0	0	39034000	27843000	11191000	0	0	0	46506	3001	43779	281368	377370	377370			1	
SLLQVLGSVK	1	Unmodified	1042.6386	0.63864553	3551	Q8N612	FAM160A2	FTS and Hook-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		79.105	78.199	2	0.00066873	65769	160511_QHF_FH_JSI10i_3	79.974	12.804			1.323	1.0808	15.348	3	0	Plateau	1.198	0.97638	NaN	1	0	Median	0.94583	1.0808	NaN	1	0	Median	1.3869	1.3202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48469000	20800000	27668000	17848000	8295000	9553000	11543000	5727300	5815500	19078000	6778100	12300000	0	0	0	46507	3551	43780	281369;281370;281371	377371;377372;377373;377374	377372			4	
SLLSAALAK	1	Unmodified	872.53312	0.53311783	3640	Q8NEN9	PDZD8	PDZ domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		54.907	53.868	2	0.02921	45074	160511_QHF_FH_JSI10i_3	40.352	15.429			1.022	0.96751	4.5938	3	0	Median	1.0867	0.91087	NaN	1	0	Median	0.85425	0.99682	NaN	1	0	Median	1.022	0.96751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92300000	41675000	50625000	33847000	14421000	19426000	32963000	15808000	17155000	25490000	11446000	14044000	0	0	0	46508	3640	43781	281372;281373;281374	377375;377376	377375			1	
SLLSAEEAAK	1	Unmodified	1017.5342	0.53424004	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.41	5	4	1				3	4		4	4	4	5	36.104	31.523	2	6.2473E-11	26558	160511_QHF_FH_JSI11i_2	145.72	100.01			0.84449	0.90785	35.675	17	2	Median	1.0883	0.87857	61.675	4	0	Median	0.69819	0.81859	22.361	4	0	Median	0.78311	0.77957	25.38	4	0	Median	0.84449	0.93013	31.395	5	2	Median	4294600000	2242200000	2052400000	727360000	360020000	367340000	1112400000	596890000	515520000	1476900000	761530000	715420000	977900000	523770000	454130000	46509	3213	43782	281375;281376;281377;281378;281379;281380;281381;281382;281383;281384;281385;281386;281387;281388;281389;281390;281391	377377;377378;377379;377380;377381;377382;377383;377384;377385;377386;377387;377388;377389;377390;377391;377392;377393;377394;377395;377396;377397;377398;377399	377392			23	
SLLSGLLK	1	Unmodified	829.5273	0.52730417	1377	P31749	AKT1	RAC-alpha serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.754	69.945	2	0.0033437	60636	160511_QHF_FH_JSI12i_3	73.26	26.834			0.98858	0.99442	13.02	4	0	Median	1.3084	1.0625	NaN	1	0	Median	0.99954	1.1631	NaN	1	0	Median	0.97775	0.93069	NaN	1	0	Median	0.86474	0.87063	NaN	1	0	Median	191840000	94707000	97134000	38415000	15994000	22421000	37387000	18968000	18420000	36857000	17140000	19717000	79182000	42606000	36576000	46510	1377	43783	281392;281393;281394;281395	377400;377401;377402;377403;377404	377404			5	
SLLSHEFQDETDTEEETLYSSK	1	Unmodified	2587.145	0.14495208	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.886	66.886	3	3.4779E-19	59566	160511_QHF_FH_JSI11i_3	153.82	147.59			1.1196	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1196	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99457000	45157000	54300000	0	0	0	0	0	0	99457000	45157000	54300000	0	0	0	46511	594	43784	281396	377405	377405			1	
SLLSLPEK	1	Unmodified	885.51713	0.51713341	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	10	5.73			2				1	2				3	2	59.562	52.971	2	0.00091687	46700	160511_QHF_FH_JSI11i_3	96.492	47.133			1.875	1.1024	43.332	5	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8447	1.7516	40.838	3	0	Plateau	1.086	1.1577	64.603	2	0	Median	85568000	25311000	60256000	0	0	0	0	0	0	47014000	13898000	33116000	38554000	11414000	27140000	46512	3438	43785	281397;281398;281399;281400;281401	377406;377407;377408	377406			3	
SLLSNDLK	1	Unmodified	888.49165	0.49164694	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	no	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	37.727	36.682	2	0.0061156	31958	160511_QHF_FH_JSI9i_2	63.565	17.139			1.8611	1.6604	NaN	1	0	Median	1.8611	1.6604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46518000	17168000	29350000	46518000	17168000	29350000	0	0	0	0	0	0	0	0	0	46513	2752	43786	281402;281403	377409;377410	377410			2	
SLLSNLDEVKK	2	Unmodified	1244.6976	0.69761697	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	3	2	50.906	50.223	2;3	8.0829E-15	44157	160511_QHF_FH_JSI11i_3	132.32	122.54			0.88101	0.89867	33.718	9	2	Median	0.83109	0.68454	67.598	2	1	Median	0.84893	1.0274	4.3526	2	1	Median	0.91725	0.86331	28.728	3	0	Plateau	0.77862	0.79282	8.7787	2	0	Median	2174400000	975160000	1199200000	207360000	100390000	106970000	229270000	124550000	104720000	1176800000	453110000	723660000	560970000	297130000	263840000	46514	3766	43787	281404;281405;281406;281407;281408;281409;281410;281411;281412	377411;377412;377413;377414;377415;377416;377417;377418	377411			7	
SLLSQMLHYDPNK	1	Unmodified	1544.7657	0.76571331	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		75.565	74.418	2;3	1.6864E-08	61285	160511_QHF_FH_JSI9i_3	120.53	111.88			0.75186	0.77442	17.465	5	0	Median	0.81332	0.66413	21.728	2	0	Median	0.69569	0.80395	8.4528	2	0	Median	0.94329	0.89011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	566320000	300680000	265650000	145180000	72557000	72619000	146440000	85175000	61265000	274710000	142940000	131760000	0	0	0	46515	1252	43788	281413;281414;281415;281416;281417	377419;377420;377421;377422;377423;377424;377425;377426;377427;377428;377429;377430	377426			12	
SLLSQNK	1	Unmodified	788.43922	0.43921744	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.018	13.101	2	0.05864	10101	160511_QHF_FH_JSI12i_3	41.227	9.9377			0.61168	0.59519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61168	0.59519	NaN	1	0	Median	45110000	25307000	19803000	0	0	0	0	0	0	0	0	0	45110000	25307000	19803000	46516	610	43789	281418	377431	377431			1	
SLLSSASATVGHGLTAVK	1	Unmodified	1697.9312	0.93119874	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	66.045	65.251	2;3	2.3867E-31	57883	160511_QHF_FH_JSI11i_3	194.12	161.79			0.49804	0.6165	28.951	6	4	Linear	0.58491	0.46767	NaN	1	1	Median	0.72221	0.82704	23.502	2	2	Median	0.53799	0.51769	23.21	2	1	Median	0.60847	0.62304	NaN	1	0	Median	1219400000	798330000	421050000	241860000	145970000	95885000	292060000	175840000	116210000	618680000	438200000	180490000	66788000	38319000	28469000	46517	3420	43790	281419;281420;281421;281422;281423;281424	377432;377433;377434;377435;377436;377437;377438	377432			6	
SLLSSTSTTTK	1	Unmodified	1124.5925	0.5924832	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	23.156	22.384	2	0.0012589	18560	160511_QHF_FH_JSI12i_2	80.916	58.425			1.0952	1.1843	3.5037	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1621	1.214	NaN	1	0	Median	1.0322	1.1553	NaN	1	0	Median	141880000	70536000	71348000	0	0	0	0	0	0	77677000	38242000	39435000	64208000	32294000	31913000	46518	227	43791	281425;281426;281427	377439;377440;377441	377439			2	
SLLTDYISLAK	1	Unmodified	1222.6809	0.68090428	281	O15360	FANCA	Fanconi anemia group A protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.991	90.926	2	0.00057528	78925	160511_QHF_FH_JSI12i_3	76.228	52.073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46519	281	43792	281428	377442	377442			1	
SLLTEADAGHTEFTDEVYQNESR	0	Unmodified	2611.1674	0.16741886	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	67.019	66.438	3	4.4835E-188	59187	160511_QHF_FH_JSI11i_3	310.17	296.11			1.1136	1.1421	7.4591	8	1	Median	1.2388	1.0502	NaN	1	0	Median	0.86315	1.0412	9.9607	2	0	Median	1.1976	1.1698	1.1547	3	1	Plateau	1.0675	1.1168	8.5233	2	0	Median	1180500000	554620000	625900000	162810000	71833000	90975000	323930000	159590000	164340000	348600000	157410000	191190000	345190000	165790000	179390000	46520	5161	43793	281429;281430;281431;281432;281433;281434;281435;281436	377443;377444;377445;377446;377447;377448;377449;377450;377451;377452;377453;377454;377455;377456;377457;377458	377444			16	
SLLTLLWHCSLDALR	0	Unmodified	1796.9607	0.96072473	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		96.319	88.254	3	4.15E-33	52187	160513_QHF_FH_JSI10Kac_6	161.84	131.3			0.82509	0.9967	26.652	3	0	Plateau	0.72656	0.62577	NaN	1	0	Median	0.82509	0.9967	NaN	1	0	Median	1.0105	0.98895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	398340000	201200000	197140000	34075000	17491000	16583000	275060000	144890000	130170000	89208000	38818000	50390000	0	0	0	46521	2094	43794	281437;281438;281439	377459;377460	377460			2	
SLLTYGR	0	Unmodified	808.4443	0.44430282	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			33.252	31.843	2	0.0072762	26662	160511_QHF_FH_JSI10i_3	88.029	35.346			1.125	1.0699	11.704	2	0	Median	1.4633	1.1623	NaN	1	0	Median	0.86491	0.98496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	828930000	340570000	488360000	443600000	153170000	290440000	385330000	187400000	197930000	0	0	0	0	0	0	46522	1379	43795	281440;281441	377461;377462;377463;377464	377462			4	
SLLVIPNTLAVNAAQDSTDLVAK	1	Unmodified	2352.29	0.2900406	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	10	10								6	6	4	4	101.28	101.19	2;3	3.1824E-49	91919	160511_QHF_FH_JSI10i_1	241.79	230.35			1.0893	1.1663	21.585	19	14	Median	1.4457	1.2446	33.103	5	4	Median	0.88755	1.0796	11.929	6	5	Median	1.1508	1.1604	9.9388	4	2	Median	1.2264	1.3236	16.361	4	3	Median	11398000000	5443400000	5955100000	1602700000	653510000	949160000	4970800000	2604100000	2366800000	2268000000	1123300000	1144700000	2557000000	1062400000	1494500000	46523	1132	43796	281442;281443;281444;281445;281446;281447;281448;281449;281450;281451;281452;281453;281454;281455;281456;281457;281458;281459;281460;281461	377465;377466;377467;377468;377469;377470;377471;377472;377473;377474;377475;377476;377477;377478;377479;377480;377481;377482;377483;377484;377485;377486;377487	377473			23	
SLLVNPEGPTLMR	0	Oxidation (M)	1441.7599	0.75989966	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.21		6	3				2	6		4	5	3	5	64.763	59.526	2	5.8129E-09	52375	160511_QHF_FH_JSI9i_2	106.58	85.121			1.0159	1.0683	23.944	11	8	Median	1.2681	1.0778	19.803	2	2	Median	0.93474	1.109	34.718	3	2	Plateau	0.90003	0.84931	16.466	3	2	Plateau	0.837	1.0683	12.982	3	2	Plateau	978030000	491470000	486560000	98251000	45425000	52827000	205200000	89295000	115910000	340100000	177300000	162800000	334480000	179450000	155030000	46524	1650	43797	281462;281463;281464;281465;281466;281467;281468;281469;281470;281471;281472;281473;281474;281475;281476;281477;281478	377488;377489;377490;377491;377492;377493;377494;377495;377496;377497;377498;377499;377500;377501;377502;377503;377504;377505;377506;377507	377498		1322	20	
SLLVNPEGPTLMR	0	Unmodified	1425.765	0.76498503	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.61	2	5	4					4	4	3	5	7	4	73.29	69.027	2;3	3.1077E-41	58703	160511_QHF_FH_JSI10i_3	185.08	157.34			0.98612	1.1419	19.694	15	2	Median	1.4523	1.2037	9.9772	3	0	Plateau	0.98612	1.181	3.5448	3	0	Plateau	1.0278	1.0086	23.961	6	2	Median	0.85222	0.92474	12.365	3	0	Median	8703900000	4052500000	4651400000	1457900000	584910000	872960000	1521400000	713460000	807980000	3563900000	1566700000	1997200000	2160700000	1187400000	973290000	46525	1650	43797	281479;281480;281481;281482;281483;281484;281485;281486;281487;281488;281489;281490;281491;281492;281493;281494;281495;281496;281497	377508;377509;377510;377511;377512;377513;377514;377515;377516;377517;377518;377519;377520;377521;377522;377523;377524;377525;377526;377527;377528;377529;377530;377531;377532;377533;377534;377535	377512			28	
SLLVNPVLFPNREDYIHLMGYDK	1	Unmodified	2732.3996	0.39960782	4438	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		101.02	100.94	4	1.4194E-19	89965	160511_QHF_FH_JSI11i_3	135.86	128.83			0.76665	0.80927	29.576	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82141	0.99751	NaN	1	0	Median	0.71554	0.65655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	226810000	121230000	105580000	0	0	0	87232000	47852000	39380000	139570000	73374000	66199000	0	0	0	46526	4438	43798	281498;281499	377536;377537	377536			2	
SLLVPDHVITR	0	Unmodified	1248.719	0.71902112	1287	P27144	AK4	Adenylate kinase 4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	53.273	52.565	2;3	9.0166E-06	44924	160511_QHF_FH_JSI12i_3	84.718	64.511			1.0793	1.0473	22.486	8	1	Median	1.2418	1.0466	NaN	1	0	Median	0.91306	1.079	20.193	2	1	Median	1.0685	1.0424	11.784	3	0	Median	1.3548	1.4123	42.186	2	0	Median	486090000	242340000	243750000	72471000	32008000	40463000	86393000	46363000	40029000	194060000	97412000	96647000	133170000	66557000	66615000	46527	1287	43799	281500;281501;281502;281503;281504;281505;281506;281507;281508	377538;377539;377540;377541;377542;377543;377544;377545	377544			7	
SLLVQTK	1	Unmodified	787.48035	0.48035398	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.72	6.42	5	6	5			2	3	4	4	7	8	6	8	28.935	23.941	2	0.004105	20771	160511_QHF_FH_JSI12i_2	100.19	57.188			1.0349	1.0115	41.842	28	4	Median	1.1821	0.98164	51.628	7	1	Median	0.87815	1.0299	43.225	8	1	Median	1.077	1.07	17.104	6	0	Median	1.07	1.1856	50.276	7	2	Median	16131000000	7989100000	8142300000	2644900000	1110600000	1534300000	4258800000	2360600000	1898300000	4729100000	2100300000	2628900000	4498500000	2417600000	2080900000	46528	1484	43800	281509;281510;281511;281512;281513;281514;281515;281516;281517;281518;281519;281520;281521;281522;281523;281524;281525;281526;281527;281528;281529;281530;281531;281532;281533;281534;281535;281536;281537	377546;377547;377548;377549;377550;377551;377552;377553;377554;377555;377556;377557;377558;377559;377560;377561;377562;377563;377564;377565;377566;377567;377568;377569;377570;377571;377572;377573;377574;377575;377576;377577;377578;377579;377580;377581;377582;377583;377584;377585;377586;377587;377588;377589;377590;377591;377592	377551			47	
SLLVTELGSSR	0	Unmodified	1160.6401	0.6401021	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	56.7	56.039	2	1.3555E-09	48094	160511_QHF_FH_JSI12i_3	134.84	92.735			0.93773	0.99197	11.43	5	1	Median	1.162	0.99197	NaN	1	0	Median	0.93773	1.0757	NaN	1	0	Median	0.94131	0.93046	10.691	2	1	Median	0.79524	0.81693	NaN	1	0	Median	914920000	450950000	463980000	113280000	46227000	67055000	72731000	35042000	37689000	444730000	214740000	229990000	284180000	154940000	129240000	46529	1317	43801	281538;281539;281540;281541;281542	377593;377594;377595;377596	377596			3	
SLLVVHFWAPWAPQCAQMNEVMAELAK	1	Unmodified	3125.5289	0.52892421	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.326	89.249	3	2.4431E-70	53120	160513_QHF_FH_JSI10Kac_6	192.3	180.11			0.83675	1.0009	18.842	3	1	Plateau	1.5108	1.3134	NaN	1	1	Median	0.83675	1.0009	NaN	1	0	Median	0.95887	0.91448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	863710000	434420000	429300000	83363000	28587000	54776000	539050000	295990000	243050000	241300000	109840000	131470000	0	0	0	46530	595	43802	281543;281544;281545	377597;377598;377599;377600;377601	377600			5	
SLLWTETFMNK	1	Unmodified	1368.6748	0.67477304	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	86.114	85.59	2	1.4642E-07	76222	160511_QHF_FH_JSI11i_3	123.88	84.735			0.97824	1.0455	19.269	5	4	Median	NaN	NaN	NaN	0	0	Median	0.82671	0.94067	14.946	2	2	Median	1.2666	1.1688	NaN	1	0	Median	1.1741	1.1784	25.825	2	2	Median	304770000	117720000	187050000	0	0	0	38589000	19210000	19379000	93897000	31027000	62870000	172290000	67486000	104800000	46531	859	43803	281546;281547;281548;281549;281550	377602;377603;377604;377605;377606;377607	377602			6	
SLLYQILDGIHYLHANWVLHR	0	Unmodified	2560.3703	0.37029702	1651	P49336;Q9BWU1	CDK8;CDK19	Cyclin-dependent kinase 8;Cyclin-dependent kinase 19	yes	no	0	0	0	0		By MS/MS			16	0									1		1			95.924	90.204	5	4.0247E-11	52116	160513_QHF_FH_JSI10Kac_6	162.15	146.45			0.34424	0.39316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34424	0.39316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59642000	43018000	16624000	0	0	0	59642000	43018000	16624000	0	0	0	0	0	0	46532	1651	43804	281551	377608	377608			1	
SLLYVGNR	0	Unmodified	920.50797	0.50796571	4209	Q96QE3	ATAD5	ATPase family AAA domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			35.58	34.625	2	0.021912	30369	160511_QHF_FH_JSI10i_2	44.447	4.4258			0.72373	0.88253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72373	0.88253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90056000	55632000	34424000	0	0	0	90056000	55632000	34424000	0	0	0	0	0	0	46533	4209	43805	281552	377609	377609			1	
SLMASEEEYSTK	1	Oxidation (M)	1389.597	0.59697623	73	CON__Q3SX28			yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.02	9	1				3	3			4	4	2	6	29.578	25.058	2	1.2895E-05	20141	160511_QHF_FH_JSI9i_1	99.522	89.236		+	1.2634	1.4188	59.289	11	6	Median	0.77642	0.64794	69.834	3	3	Median	1.2634	1.4188	44.308	3	2	Median	1.0924	1.0535	6.6287	2	0	Median	2.667	2.9468	46.36	3	1	Median	190290000	81622000	108670000	60854000	32587000	28267000	35716000	13817000	21899000	25947000	13346000	12601000	67770000	21872000	45898000	46534	73	43806	281553;281554;281555;281556;281557;281558;281559;281560;281561;281562;281563;281564;281565;281566;281567;281568	377610;377611;377612;377613;377614;377615;377616;377617;377618;377619;377620;377621;377622;377623;377624;377625;377626;377627;377628;377629	377623		34	20	
SLMASEEEYSTK	1	Unmodified	1373.6021	0.60206161	73	CON__Q3SX28			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.54	4	6	4			1	4	1		6	6	5	3	36.887	32.69	2	1.767E-76	28489	160511_QHF_FH_JSI9i_2	215.56	181.18		+	0.89288	0.94966	22.476	16	9	Median	1.1504	0.97547	33.615	4	4	Median	0.72023	0.99144	14.962	4	1	Linear	0.99381	1.0186	25.722	5	4	Median	0.94134	1.0017	16.153	3	0	Median	4027500000	2005200000	2022300000	721660000	332740000	388920000	1112500000	582320000	530200000	1574100000	786030000	788080000	619220000	304130000	315090000	46535	73	43806	281569;281570;281571;281572;281573;281574;281575;281576;281577;281578;281579;281580;281581;281582;281583;281584;281585;281586;281587;281588	377630;377631;377632;377633;377634;377635;377636;377637;377638;377639;377640;377641;377642;377643;377644;377645;377646;377647;377648;377649;377650;377651;377652;377653;377654;377655;377656	377648			27	
SLMDHTIPEV	0	Unmodified	1140.5485	0.5485099	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.79	3	4	1				1	2		4	3	3	1	65.401	61.856	2	3.2902E-05	53219	160511_QHF_FH_JSI12i_2	96.19	84.235			0.92844	1.021	11.415	11	3	Median	1.4209	1.2175	17.476	4	1	Linear	0.86154	1.021	6.6062	3	1	Median	0.92303	0.94808	9.1537	3	1	Median	0.92844	1.0654	NaN	1	0	Median	1595800000	797320000	798510000	264760000	102870000	161890000	440820000	246440000	194380000	585130000	288390000	296750000	305120000	159620000	145500000	46536	151	43807	281589;281590;281591;281592;281593;281594;281595;281596;281597;281598;281599	377657;377658;377659;377660;377661;377662;377663;377664;377665;377666;377667;377668;377669;377670	377659			13	
SLMDQYFAR	0	Unmodified	1129.5226	0.5226295	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	57.909	57.245	2	5.0538E-08	50869	160511_QHF_FH_JSI11i_3	144.12	137.3			1.0627	1.0231	6.7962	6	0	Median	1.1872	1.0139	NaN	1	0	Median	0.81067	0.9771	NaN	1	0	Median	1.1199	1.0802	6.4255	2	0	Median	0.98439	1.0484	10.686	2	0	Median	1156900000	547090000	609780000	111850000	47268000	64584000	145730000	82876000	62855000	534920000	239980000	294940000	364360000	176960000	187400000	46537	2084	43808	281600;281601;281602;281603;281604;281605	377671;377672;377673;377674;377675;377676;377677;377678	377672			8	
SLMEQDVK	1	Unmodified	948.45863	0.45863226	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2				1	2	2	24.323	21.846	2	0.00084694	19328	160511_QHF_FH_JSI12i_1	97.431	30.399			1.0226	1.0381	10.384	4	1	Median	NaN	NaN	NaN	0	0	Median	0.84161	0.98199	NaN	1	0	Median	1.0226	1.0171	10.746	2	1	Median	1.1083	1.1835	NaN	1	0	Median	787200000	399070000	388130000	0	0	0	246420000	112510000	133910000	255200000	142190000	113010000	285570000	144360000	141210000	46538	3965	43809	281606;281607;281608;281609;281610	377679;377680;377681;377682;377683	377680			5	
SLMEQGIQEDEQLLLR	0	Unmodified	1900.9564	0.95642721	4363	Q9BQL6	FERMT1	Fermitin family homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.755	88.059	2	4.5686E-11	78328	160511_QHF_FH_JSI10i_2	104.87	74.535			1.2824	1.4	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2824	1.4	NaN	1	1	Median	11280000	3958000	7321700	2987500	0	2987500	0	0	0	0	0	0	8292200	3958000	4334200	46539	4363	43810	281611;281612;281613;281614	377684;377685;377686;377687	377687			4	
SLMFNLK	1	Unmodified	851.45751	0.45751004	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	60.3	59.238	2	0.010534	47190	160511_QHF_FH_JSI9i_3	74.415	0			1.2184	1.3068	23.47	6	0	Median	1.3686	1.1118	38.507	2	0	Median	0.98411	1.1271	5.6333	2	0	Median	1.6456	1.5716	NaN	1	0	Median	1.4227	1.4561	NaN	1	0	Median	393510000	160330000	233170000	108670000	46024000	62645000	108310000	59374000	48932000	64833000	20340000	44493000	111700000	34598000	77104000	46540	3849	43811	281615;281616;281617;281618;281619;281620	377688;377689;377690;377691;377692;377693;377694;377695;377696	377693			9	
SLMIQTLEAVK	1	Unmodified	1231.6846	0.68460945	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.831	74.038	2	5.3485E-23	64178	160511_QHF_FH_JSI12i_3	170.99	142.82			0.94588	0.90959	6.6789	4	0	Linear	1.2623	1.0369	NaN	1	0	Median	0.89574	1.0272	NaN	1	0	Median	0.99882	0.93751	NaN	1	0	Median	0.88702	0.90629	NaN	1	0	Median	706390000	375250000	331140000	35598000	14545000	21053000	74593000	42611000	31983000	226610000	120350000	106260000	369590000	197740000	171850000	46541	5532	43812	281621;281622;281623;281624	377697;377698;377699;377700;377701;377702;377703;377704	377703			8	
SLMNLLFSLHVSYK	1	Unmodified	1650.8803	0.88034914	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.216	86.496	3	0.00023315	49481	160513_QHF_FH_JSI10Kac_6	86.214	71.052			0.41594	0.50093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41594	0.50093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64994000	44294000	20700000	0	0	0	64994000	44294000	20700000	0	0	0	0	0	0	46542	5034	43813	281625	377705	377705			1	
SLMPQIIPGK	1	Unmodified	1082.6158	0.6158016	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.858	66.562	2	0.009417	57563	160511_QHF_FH_JSI12i_3	49.833	17.899			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46543	3195	43814	281626	377706	377706			1	
SLMPYFLLTQAVR	0	Unmodified	1537.8327	0.83267067	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	93.271	85.446	2;3	1.8597E-50	45869	160513_QHF_FH_JSI12Kac_6	204.69	166.39			0.87976	1.0396	27.945	5	0	Median	1.7835	1.5615	NaN	1	0	Median	0.75168	0.88816	22.264	2	0	Median	0.87628	0.83448	NaN	1	0	Median	1.0142	1.0757	NaN	1	0	Median	1708800000	926450000	782400000	335150000	116800000	218350000	886530000	538250000	348290000	310840000	164480000	146370000	176320000	106920000	69394000	46544	313	43815	281627;281628;281629;281630;281631	377707;377708;377709;377710;377711;377712;377713;377714;377715	377712			9	
SLMSADNVR	0	Unmodified	991.47568	0.4756793	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.42	5.91		6	2				1	3		2	1	4	5	27.543	24.215	2	4.199E-08	20993	160511_QHF_FH_JSI9i_2	146.03	80.358			1.1148	1.0275	32.403	10	1	Median	1.2857	1.081	0.58488	2	0	Median	0.65637	0.80091	NaN	1	0	Median	0.96447	0.96958	17.437	4	0	Median	1.6385	1.6753	58.12	3	1	Median	1359600000	650520000	709070000	205690000	96922000	108760000	225280000	119330000	105940000	498360000	255860000	242500000	430280000	178410000	251870000	46545	300	43816	281632;281633;281634;281635;281636;281637;281638;281639;281640;281641;281642;281643	377716;377717;377718;377719;377720;377721;377722;377723;377724;377725;377726;377727;377728;377729;377730;377731;377732	377724			16	
SLMSADNVR	0	Oxidation (M)	1007.4706	0.47059393	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	25.46	24.401	2	0.0030455	20953	160511_QHF_FH_JSI9i_2	66.504	32.708			1.3014	1.1502	48.132	3	0	Median	1.3731	1.1502	NaN	1	0	Median	1.3014	1.6435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58002	0.63389	NaN	1	0	Median	164420000	78701000	85717000	62265000	23501000	38764000	41141000	17951000	23189000	0	0	0	61013000	37248000	23764000	46546	300	43816	281644;281645;281646	377733;377734	377734		118	2	
SLMVDHVTEVSQWMVGVK	1	Unmodified	2044.0122	0.012167951	4867	Q9HD15	SRA1	Steroid receptor RNA activator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	91.42	91.058	3	2.9063E-82	78879	160511_QHF_FH_JSI12i_3	200.69	180.87			0.76502	0.87819	25.942	3	1	Median	NaN	NaN	NaN	0	0	Median	0.76502	0.87819	NaN	1	0	Median	1.2643	1.2063	NaN	1	1	Median	0.70485	0.72137	NaN	1	0	Median	205160000	92179000	112990000	0	0	0	11294000	5656100	5637900	82210000	26757000	55453000	111660000	59767000	51895000	46547	4867	43817	281647;281648;281649	377735;377736;377737	377737			3	
SLMWTLLK	1	Unmodified	990.55722	0.55722409	4648	Q9H0X9	OSBPL5	Oxysterol-binding protein-related protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		85.655	84.856	2	0.0017787	75538	160511_QHF_FH_JSI11i_3	85.064	73.159			1.1582	0.94638	2.8857	3	0	Plateau	1.1582	0.94638	NaN	1	0	Median	0.80419	0.91698	NaN	1	0	Median	1.0293	0.97138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51535000	25140000	26395000	20044000	9842300	10202000	14311000	7575500	6735100	17180000	7722200	9458000	0	0	0	46548	4648	43818	281650;281651;281652	377738;377739;377740;377741;377742	377738			5	
SLMYSAQK	1	Unmodified	926.45315	0.45315295	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		22.145	21.81	2	0.015474	18039	160511_QHF_FH_JSI11i_2	49.097	36.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46549	1152	43819	281653	377743	377743			1	
SLNDITAK	1	Unmodified	860.46035	0.46034682	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	6.06	5	1				2	2			1	3	3	3	26.997	23.124	2	0.0017225	19872	160511_QHF_FH_JSI9i_1	85.676	20.424			1.0214	1.0485	61.621	10	3	Median	1.0812	0.89183	NaN	1	0	Median	0.88147	1.0563	124.87	3	2	Median	1.2035	1.1753	17.147	3	0	Median	0.95681	1.0408	28.983	3	1	Median	2579300000	1234900000	1344400000	473420000	199500000	273920000	771660000	358560000	413100000	678940000	336190000	342760000	655320000	340650000	314670000	46550	1612	43820	281654;281655;281656;281657;281658;281659;281660;281661;281662;281663	377744;377745;377746;377747;377748;377749;377750;377751;377752	377750			9	
SLNDLEK	1	Unmodified	817.41815	0.41814765	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.916	21.6	2	0.019071	18680	160511_QHF_FH_JSI11i_1	58.917	3.4762			1.206	1.2106	32.681	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5744	1.5254	NaN	1	0	Median	0.92376	0.96084	NaN	1	0	Median	171500000	82178000	89325000	0	0	0	0	0	0	76818000	34763000	42055000	94686000	47416000	47270000	46551	1737	43821	281664;281665	377753	377753			1	
SLNDLIEER	0	Unmodified	1087.551	0.55095274	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			52.31	51.901	2	0.0020549	46780	160511_QHF_FH_JSI10i_1	87.895	38.798			0.84298	1.0029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84298	1.0029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	180620000	76067000	104550000	0	0	0	180620000	76067000	104550000	0	0	0	0	0	0	46552	4154	43822	281666	377754	377754			1	
SLNFVSTLLQITMSEQLDLPVR	0	Unmodified	2503.3356	0.33561058	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	101.18	93.595	3	2.8707E-13	56194	160513_QHF_FH_JSI10Kac_6	106.23	93.761			1.0611	1.172	18.825	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8831	1.0259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.275	1.3389	NaN	1	0	Median	244510000	119160000	125350000	0	0	0	192970000	93884000	99082000	0	0	0	51540000	25272000	26268000	46553	686	43823	281667;281668	377755;377756	377756			2	
SLNGAVPLGSNAR	0	Unmodified	1254.668	0.66804818	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			38.903	37.938	2	0.0024262	33360	160511_QHF_FH_JSI10i_2	67.385	44.645			1.0631	1.3156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0631	1.3156	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27559000	12221000	15339000	0	0	0	27559000	12221000	15339000	0	0	0	0	0	0	46554	4679	43824	281669	377757	377757			1	
SLNILTAFQK	1	Unmodified	1133.6445	0.64445919	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5.52	4	4	4					1	2	3	3	4	5	82.586	80.149	2	3.082E-15	71063	160511_QHF_FH_JSI12i_3	168.8	110.84			0.99171	0.91018	17.155	15	1	Median	1.0846	0.90207	8.2945	3	0	Median	0.70136	0.81149	7.5094	3	0	Median	1.0495	1.0191	8.2056	4	0	Median	0.8486	0.91018	26.137	5	1	Median	7916000000	3887300000	4028700000	1360600000	632130000	728430000	1411000000	733370000	677660000	2246000000	1078800000	1167200000	2898400000	1442900000	1455500000	46555	1332	43825	281670;281671;281672;281673;281674;281675;281676;281677;281678;281679;281680;281681;281682;281683;281684	377758;377759;377760;377761;377762;377763;377764;377765;377766;377767;377768;377769;377770;377771;377772;377773;377774;377775;377776;377777;377778;377779;377780;377781;377782;377783;377784;377785;377786;377787;377788;377789;377790;377791;377792;377793;377794;377795	377793			38	
SLNLEDYKK	2	Unmodified	1108.5764	0.57643921	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	32.849	32.755	3	0.0066657	27636	160511_QHF_FH_JSI12i_3	40.727	26.609			1.4356	1.47	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4356	1.47	NaN	1	0	Median	50519000	19985000	30534000	0	0	0	0	0	0	0	0	0	50519000	19985000	30534000	46556	3839	43826	281685	377796	377796			1	
SLNLKHIK	2	Acetyl (K)	993.59712	0.59711507	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	44.162	35	2;3	0.00016917	19227	160513_QHF_FH_JSI11Kac_6	124.23	57.538			0.86832	0.95617	75.337	7	2	Median	1.3864	1.1835	NaN	1	1	Median	1.1859	1.3652	132.51	2	1	Median	0.43493	0.4204	12.321	2	0	Median	0.96604	1.0395	11.816	2	0	Median	408880000	222520000	186360000	44288000	15545000	28743000	147270000	67340000	79935000	132010000	95206000	36800000	85315000	44428000	40888000	46557	2474	43827	281686;281687;281688;281689;281690;281691;281692;281693	377797;377798;377799;377800;377801;377802;377803;377804	377797	2495		8	
SLNLLKIK	2	Acetyl (K)	969.62227	0.62226719	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	1	0	0	1			By MS/MS		15	0.816							1	1	1			3		76.741	66.504	2	0.019273	36008	160513_QHF_FH_JSI11Kac_6	68.383	21.388			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28229000	28229000	0	0	0	0	0	0	0	28229000	28229000	0	0	0	0	46558	3686	43828	281694;281695;281696	377805;377806;377807	377805	2913		3	
SLNLNIFLK	1	Unmodified	1060.6281	0.62808085	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.902	89.814	2	0.0076494	77735	160511_QHF_FH_JSI12i_3	53.166	49.006			1.1731	1.0962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1731	1.0962	NaN	1	0	Median	31964000	15365000	16599000	0	0	0	0	0	0	0	0	0	31964000	15365000	16599000	46559	2787	43829	281697	377808	377808			1	
SLNLSTEFISSTK	1	Unmodified	1425.7351	0.73512469	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.828	5	4	4							3	4	3	3	69.662	68.949	2	6.4743E-22	62770	160511_QHF_FH_JSI11i_1	169.89	129.89			0.93878	0.94762	12.758	13	2	Median	1.3225	1.1299	16.29	3	0	Median	0.75994	0.90657	10.642	4	2	Median	0.89644	0.94063	7.1991	3	0	Plateau	1.039	1.0761	2.6473	3	0	Median	2139000000	1095600000	1043400000	321690000	138730000	182960000	660140000	369490000	290640000	571430000	293050000	278380000	585700000	294330000	291370000	46560	1464	43830	281698;281699;281700;281701;281702;281703;281704;281705;281706;281707;281708;281709;281710	377809;377810;377811;377812;377813;377814;377815;377816;377817;377818;377819;377820;377821;377822;377823;377824;377825;377826;377827;377828;377829;377830;377831	377811			23	
SLNNFISQR	0	Unmodified	1077.5567	0.55670682	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				43.711	42.127	2	0.035144	34456	160511_QHF_FH_JSI9i_3	47.187	10.63			0.6112	0.49975	NaN	1	1	Median	0.6112	0.49975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22281000	14003000	8278300	22281000	14003000	8278300	0	0	0	0	0	0	0	0	0	46561	5720	43831	281711	377832	377832			1	
SLNNQFASFIDK	1	Unmodified	1382.683	0.68302954	810	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			72.682	71.878	2	6.3632E-05	63343	160511_QHF_FH_JSI9i_2	107.09	80.574		+	0.39348	0.40472	63.107	2	2	Median	0.30334	0.25904	NaN	1	1	Median	0.51041	0.63234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94633000	68992000	25641000	66360000	51957000	14404000	28273000	17035000	11238000	0	0	0	0	0	0	46562	810	43832	281712;281713	377833;377834	377833			2	
SLNPNLLAVVTESTDAHHER	0	Unmodified	2202.1029	0.10290853	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.851	76.453	4	1.5598E-06	64187	160511_QHF_FH_JSI10i_3	84.975	76.787			0.73513	0.85855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73513	0.85855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25296000	13372000	11924000	0	0	0	25296000	13372000	11924000	0	0	0	0	0	0	46563	3562	43833	281714	377835;377836	377836			2	
SLNPPIFLK	1	Acetyl (Protein N-term)	1069.6172	0.61718181	3542	Q8N5C7	DTWD1	DTW domain-containing protein 1	yes	yes	0	1	0	0		By MS/MS		By MS/MS	1	0	3										2		1	91.592	91.532	2	0.0077133	83006	160511_QHF_FH_JSI10i_1	43.218	32.804			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8727900	0	8727900	0	0	0	8727900	0	8727900	0	0	0	0	0	0	46564	3542	43834	281715;281716;281717	377837;377838;377839	377839			3	
SLNQSLAEWK	1	Unmodified	1174.5982	0.59823728	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.46		4	3					1	1	3	1	3	2	54.7	51.354	2	1.3335E-11	44186	160511_QHF_FH_JSI12i_2	172.27	141.7			0.96713	0.99037	50.794	7	3	Median	1.0782	0.89634	NaN	1	1	Median	0.89246	1.1034	NaN	1	0	Median	0.96713	0.91301	28.186	3	2	Median	1.714	1.8976	91.962	2	0	Median	1170200000	612940000	557260000	3374800	1507500	1867400	282750000	169300000	113450000	514420000	258020000	256400000	369650000	184110000	185550000	46565	1829	43835	281718;281719;281720;281721;281722;281723;281724;281725;281726	377840;377841;377842;377843;377844;377845;377846;377847;377848;377849;377850;377851;377852	377843			13	
SLNSASYLYEVMERPR	0	Unmodified	1913.9305	0.93054681	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				74.617	73.162	3	0.033472	60133	160511_QHF_FH_JSI9i_3	32.152	28.731			0.90666	0.75068	NaN	1	0	Median	0.90666	0.75068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18815000	10681000	8134200	18815000	10681000	8134200	0	0	0	0	0	0	0	0	0	46566	3146	43836	281727	377853	377853			1	
SLNSDISYFGVGGK	1	Unmodified	1442.7042	0.70415892	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2	0		3								1	1	1		67.75	66.986	2	7.2318E-05	59584	160511_QHF_FH_JSI10i_2	116.01	80.787			0.69438	0.69422	15.656	3	0	Plateau	0.80816	0.69246	NaN	1	0	Median	0.73182	0.9093	NaN	1	0	Median	0.69438	0.69422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	243640000	144800000	98831000	55669000	31563000	24106000	67411000	38149000	29261000	120560000	75093000	45464000	0	0	0	46567	28	43837	281728;281729;281730	377854;377855	377855			2	
SLNSIEFR	0	Unmodified	964.49779	0.49779495	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.24		4	1						2	3	1	2	1	46.633	43.44	2	1.015E-05	37190	160511_QHF_FH_JSI11i_2	140.5	81.296			1.0113	0.91741	32.152	7	3	Median	1.0113	0.84557	42.311	3	2	Median	0.81779	1.0062	NaN	1	0	Median	1.0855	1.0657	3.3758	2	0	Median	0.74239	0.82134	NaN	1	1	Median	1709200000	863020000	846220000	245380000	117630000	127750000	341710000	208320000	133390000	728410000	323060000	405350000	393740000	214000000	179730000	46568	2094	43838	281731;281732;281733;281734;281735;281736;281737	377856;377857;377858;377859;377860;377861;377862;377863	377860			8	
SLNTGIITVQNYGSHVPPK	1	Unmodified	2024.0691	0.069089203	188	O14672	ADAM10	Disintegrin and metalloproteinase domain-containing protein 10	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.106	82.012	3	0.055999	71120	160511_QHF_FH_JSI12i_2	22.435	7.0136			1.9024	2.1456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9024	2.1456	NaN	1	1	Median	287500000	107110000	180390000	0	0	0	0	0	0	0	0	0	287500000	107110000	180390000	46569	188	43839	281738	377864	377864			1	
SLNWEEMEK	1	Unmodified	1164.5121	0.51212439	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	52.045	51.069	2	0.00015974	44019	160511_QHF_FH_JSI11i_2	88.496	79.583			0.96011	1.0276	12.602	4	0	Median	1.0024	0.8544	NaN	1	0	Median	0.90689	1.1168	NaN	1	0	Median	0.94364	0.96011	NaN	1	0	Median	0.97686	1.0998	NaN	1	0	Median	562090000	304150000	257940000	115610000	59384000	56228000	113960000	59580000	54384000	220460000	118830000	101630000	112060000	66357000	45700000	46570	3950	43840	281739;281740;281741;281742;281743	377865;377866;377867;377868;377869;377870;377871;377872;377873	377871			9	
SLNYCGHIYTPISCK	1	Unmodified	1811.8335	0.8334753	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	53.28	52.682	3	3.8674E-06	46650	160511_QHF_FH_JSI11i_3	85.563	62.201			1.0401	1.0022	25.738	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2767	1.4736	NaN	1	0	Median	1.0401	1.0022	NaN	1	0	Median	0.90479	0.90442	NaN	1	1	Median	157330000	68448000	88885000	0	0	0	33395000	15777000	17617000	62114000	23022000	39093000	61824000	29649000	32175000	46571	3922	43841	281744;281745;281746;281747	377874;377875;377876;377877;377878	377875			5	
SLNYKSTSSGHR	1	Acetyl (K)	1377.6637	0.66369108	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		20.934	12.949	3	0.0084004	8186	160513_QHF_FH_JSI11Kac_6	42.785	37.518			0.58437	0.62507	53.298	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79845	0.91117	NaN	1	0	Median	0.42768	0.4288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9443400	6019200	3424200	0	0	0	5045000	2913700	2131300	4398400	3105500	1292900	0	0	0	46572	3250	43842	281748;281749	377879;377880;377881;377882	377880	2812		4	
SLNYWCNLLGMK	1	Unmodified	1497.7108	0.71084097	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	92.561	88.884	2	7.703E-19	44174	160513_QHF_FH_JSI11Kac_6	150.1	97.525			0.96601	1.0674	18.341	7	1	Median	1.2666	1.0674	NaN	1	0	Median	0.87134	0.99115	12.367	2	1	Median	0.94279	0.90279	1.1375	2	0	Median	1.249	1.2766	23.982	2	0	Median	432860000	208430000	224430000	10841000	5171000	5670300	75773000	41451000	34322000	152650000	87142000	65508000	193600000	74669000	118930000	46573	4850	43843	281750;281751;281752;281753;281754;281755;281756;281757	377883;377884;377885;377886;377887;377888;377889;377890;377891;377892;377893;377894;377895	377888			13	
SLNYWCNLLGMK	1	Oxidation (M)	1513.7058	0.70575559	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			85.143	83.935	2	0.019051	70319	160511_QHF_FH_JSI10i_3	45.161	34.929			0.96131	1.1353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96131	1.1353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8772700	3888400	4884300	0	0	0	8772700	3888400	4884300	0	0	0	0	0	0	46574	4850	43843	281758	377896	377896		2540	1	
SLPASLSFLVK	1	Unmodified	1160.6805	0.68051035	2506	Q14160	SCRIB	Protein scribble homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	91.158	90.444	2	0.00032487	75342	160511_QHF_FH_JSI10i_3	75.294	70.329			0.9888	1.0952	5.2756	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9888	1.1381	2.3209	2	0	Median	1.0023	1.0248	NaN	1	0	Median	0.97619	1.0713	NaN	1	0	Median	89782000	43563000	46219000	0	0	0	47849000	22413000	25436000	20621000	11166000	9455100	21312000	9983900	11328000	46575	2506	43844	281759;281760;281761;281762;281763;281764;281765	377897;377898;377899;377900;377901;377902	377898			6	
SLPDFTELDLQGK	1	Unmodified	1461.7351	0.73512469	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.626	84.164	2	0.00077622	76650	160511_QHF_FH_JSI12i_1	71.555	50.778			0.76662	0.79528	19.378	4	0	Median	0.68005	0.55633	NaN	1	0	Median	0.76925	0.85407	NaN	1	0	Median	0.8531	0.80553	NaN	1	0	Median	0.764	0.78517	NaN	1	0	Median	75599000	45164000	30435000	15425000	9583500	5841800	12810000	9144500	3665600	23210000	12355000	10855000	24154000	14081000	10073000	46576	1213	43845	281766;281767;281768;281769	377903;377904;377905;377906;377907	377905			3	
SLPDLEILK	1	Unmodified	1026.5961	0.59611202	5379	Q9UKT5	FBXO4	F-box only protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.261	79.433	2	0.0033775	69714	160511_QHF_FH_JSI11i_2	60.59	18.481			1.5283	1.5729	17.002	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88726	1.1261	NaN	1	0	Median	1.5283	1.5729	NaN	1	0	Median	1.1397	1.2605	NaN	1	0	Median	46898000	22227000	24671000	0	0	0	11915000	6759800	5155500	23030000	10671000	12359000	11952000	4795600	7156900	46577	5379	43846	281770;281771;281772;281773	377908;377909;377910	377910			3	
SLPDLGLR	0	Unmodified	869.49707	0.49706667	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.121	58.196	2	0.0022136	50625	160511_QHF_FH_JSI11i_2	81.784	41.681			0.89663	0.90558	4.8058	4	0	Linear	1.1289	0.97404	NaN	1	0	Median	0.85137	1.0336	NaN	1	0	Median	0.90667	0.91903	NaN	1	0	Median	0.8867	0.96835	NaN	1	0	Median	285120000	150110000	135010000	58847000	30095000	28751000	53817000	26353000	27464000	111170000	59761000	51407000	61289000	33904000	27385000	46578	1002	43847	281774;281775;281776;281777	377911;377912;377913;377914;377915	377915			5	
SLPDPNLITFLFLLEHLK	1	Unmodified	2109.1874	0.18741343	2335	Q12979	ABR	Active breakpoint cluster region-related protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	101.14	92.7	3	2.0739E-56	53066	160513_QHF_FH_JSI9Kac_6	193.22	174.14			0.9442	0.95161	21.601	4	0	Median	1.1305	0.98221	NaN	1	0	Median	0.77141	0.92196	NaN	1	0	Median	0.78859	0.74693	NaN	1	0	Median	1.2024	1.2621	NaN	1	0	Median	879460000	446910000	432560000	277010000	123270000	153740000	316670000	182270000	134400000	74658000	42431000	32227000	211120000	98936000	112180000	46579	2335	43848	281778;281779;281780;281781	377916;377917;377918;377919;377920;377921	377918			6	
SLPDTELMK	1	Unmodified	1032.5161	0.51614714	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.18	48.5	2	0.00023652	43130	160511_QHF_FH_JSI9i_1	84.498	34.908			1.2735	1.2569	24.397	4	0	Median	1.1183	0.91438	NaN	1	0	Median	0.91206	1.1027	NaN	1	0	Median	1.4503	1.4327	NaN	1	0	Median	1.4526	1.5568	NaN	1	0	Median	396640000	162400000	234230000	73070000	37188000	35883000	80046000	40101000	39945000	136100000	36707000	99390000	107420000	48408000	59016000	46580	1576	43849	281782;281783;281784;281785	377922;377923;377924;377925;377926;377927;377928;377929	377929			8	
SLPDVVMNGDPK	1	Unmodified	1270.6227	0.62273747	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	54.161	53.496	2	0.0022227	47417	160511_QHF_FH_JSI9i_1	71.555	41.301			1.3627	1.2974	23.608	4	4	Median	1.1348	0.9327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3627	1.2974	8.2502	2	2	Median	1.5857	1.6363	NaN	1	1	Median	307890000	137100000	170790000	89900000	42710000	47190000	0	0	0	144040000	63075000	80961000	73956000	31317000	42639000	46581	5712	43850	281786;281787;281788;281789	377930;377931;377932;377933	377933			4	
SLPEEDVAEIQHAEEFLIKPESK	2	Unmodified	2637.3174	0.31737756	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	94.802	94.568	4	1.398E-16	81964	160511_QHF_FH_JSI12i_3	127.28	115.86			1.0598	1.0731	7.7294	6	0	Median	1.1193	0.98546	NaN	1	0	Median	0.93753	1.158	NaN	1	0	Median	1.1459	1.1075	10.278	2	0	Median	0.99417	1.0665	6.6911	2	0	Median	510070000	265360000	244710000	45992000	21641000	24351000	70416000	37465000	32950000	224430000	112780000	111640000	169230000	93473000	75759000	46582	453	43851	281790;281791;281792;281793;281794;281795	377934;377935;377936;377937;377938;377939;377940;377941;377942;377943;377944;377945	377945			11	
SLPEETMDFMVQHTSFK	1	Unmodified	2025.9176	0.91759886	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	3	1	3	87.674	87.134	3	0.00011484	76524	160511_QHF_FH_JSI11i_2	63.691	53.77			1.0248	1.0466	17.198	5	2	Median	1.8077	1.5175	NaN	1	1	Median	0.85277	1.0175	NaN	1	0	Median	1.1499	1.1915	NaN	1	0	Median	0.97719	1.0288	2.4266	2	1	Median	267760000	129340000	138420000	50062000	16922000	33139000	64397000	31706000	32691000	76741000	41536000	35206000	76556000	39176000	37380000	46583	953	43852	281796;281797;281798;281799;281800;281801;281802;281803	377946;377947;377948;377949;377950;377951;377952	377948			6	
SLPFGAQSTQR	0	Unmodified	1190.6044	0.60438529	5305	Q9UHL4	DPP7	Dipeptidyl peptidase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			38.996	37.506	2	0.052475	31237	160511_QHF_FH_JSI10i_3	35.224	15.953			0.88388	0.9971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88388	0.9971	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19949000	9352100	10597000	0	0	0	19949000	9352100	10597000	0	0	0	0	0	0	46584	5305	43853	281804	377953	377953			1	
SLPFSENVSAVQK	1	Unmodified	1404.7249	0.72489436	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	58.515	57.935	2	0.00061855	50075	160511_QHF_FH_JSI11i_2	86.014	62.695			1.6509	1.6757	4.3557	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7039	1.7281	NaN	1	1	Median	1.5996	1.6249	NaN	1	0	Median	409280000	162100000	247170000	0	0	0	0	0	0	326950000	131910000	195050000	82321000	30196000	52124000	46585	2732	43854	281805;281806	377954;377955	377955			2	
SLPGAEDYIK	1	Unmodified	1091.5499	0.5498901	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			49.97	49.015	2	0.030885	43301	160511_QHF_FH_JSI10i_2	47.187	30.091			2.334	2.8218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.334	2.8218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143570000	14767000	128800000	0	0	0	143570000	14767000	128800000	0	0	0	0	0	0	46586	561	43855	281807	377956	377956			1	
SLPGEQEQEVAGSK	1	Unmodified	1457.6998	0.69980182	2219	Q04721	NOTCH2	Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	28.79	28.2	2	0.00012508	25316	160511_QHF_FH_JSI12i_1	101.47	64.943			1.0845	1.1002	25.746	4	1	Median	1.4698	1.2075	NaN	1	0	Median	0.58791	0.68422	NaN	1	1	Median	1.105	1.0749	NaN	1	0	Median	1.0643	1.126	NaN	1	0	Median	156020000	81753000	74266000	33932000	16853000	17079000	39824000	25621000	14203000	43098000	20501000	22597000	39166000	18778000	20388000	46587	2219	43856	281808;281809;281810;281811;281812	377957;377958;377959;377960;377961;377962;377963	377960			7	
SLPGYMTR	0	Unmodified	923.45349	0.4534873	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			35.834	34.394	2	0.0029382	28733	160511_QHF_FH_JSI10i_3	83.265	50.794			1.7868	2.0129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7868	2.0129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142520000	39519000	103010000	0	0	0	142520000	39519000	103010000	0	0	0	0	0	0	46588	386	43857	281813	377964	377964			1	
SLPHITDVSWR	0	Unmodified	1309.6779	0.67788459	5237	Q9UBI1	COMMD3	COMM domain-containing protein 3	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			3							1	2			62.577	61.063	2;3	0.0031088	51107	160511_QHF_FH_JSI10i_3	43.991	35.686			0.78863	0.92487	12.639	3	1	Median	1.3282	1.0633	NaN	1	0	Median	0.75978	0.87412	7.9806	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151480000	66731000	84751000	58430000	21725000	36705000	93051000	45006000	48046000	0	0	0	0	0	0	46589	5237	43858	281814;281815;281816	377965;377966	377965			2	
SLPIVFDEFVDMDFGTGAVK	1	Unmodified	2186.0606	0.060557931	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		4								2		2		102.52	102.43	2;3	4.5534E-139	90233	160511_QHF_FH_JSI11i_2	293.35	271.3			1.0322	1.0179	14.514	4	1	Median	1.2288	1.026	25.045	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0062	1.0179	2.0295	2	0	Median	NaN	NaN	NaN	0	0	Median	432300000	197930000	234370000	87972000	47656000	40316000	0	0	0	344320000	150270000	194050000	0	0	0	46590	1283	43859	281817;281818;281819;281820	377967;377968;377969;377970;377971	377970			5	
SLPLNPK	1	Acetyl (Protein N-term)	809.4647	0.46470391	1998	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					2	2	3	2	51.305	49.491	1;2	0.0060868	44658	160511_QHF_FH_JSI11i_1	57.463	42.024			1.0659	1.0642	64.018	8	1	Median	1.0806	0.87035	1.1704	2	0	Median	0.14811	0.17522	NaN	1	1	Median	1.2329	1.1926	8.1884	3	0	Plateau	1.0329	1.0883	0.032982	2	0	Median	3651900000	1945300000	1706600000	1351000000	637940000	713040000	405630000	374410000	31218000	1098500000	537770000	560720000	796800000	395150000	401640000	46591	1998	43860	281821;281822;281823;281824;281825;281826;281827;281828;281829	377972;377973;377974;377975;377976;377977;377978;377979;377980;377981;377982;377983	377972			12	
SLPLNPKPFLNGLTGKPVMVK	3	Acetyl (Protein N-term)	2291.3075	0.30754534	1998	P62306	SNRPF	Small nuclear ribonucleoprotein F	yes	yes	0	1	0	2	By MS/MS				3	0			1							1				100.91	100.7	3	1.873E-05	81643	160511_QHF_FH_JSI9i_3	69.922	54.026			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24167000	24167000	0	24167000	24167000	0	0	0	0	0	0	0	0	0	0	46592	1998	43861	281830	377984	377984			1	
SLPMNYYTVFYHVQEQLPR	0	Unmodified	2384.1623	0.16233766	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.367	80.083	3	7.7935E-57	46086	160513_QHF_FH_JSI10Kac_6	189.48	160.67			0.89447	1.1282	9.2338	4	0	Linear	1.3157	1.1447	NaN	1	0	Median	0.92877	1.1119	NaN	1	0	Median	1.0201	0.95709	NaN	1	0	Median	1.1107	1.1774	NaN	1	0	Median	1460800000	737220000	723580000	257100000	131860000	125230000	522020000	273580000	248440000	370860000	178910000	191950000	310820000	152870000	157950000	46593	5339	43862	281831;281832;281833;281834	377985;377986;377987;377988;377989;377990	377990			6	
SLPMNYYTVFYHVQEQLPR	0	Oxidation (M)	2400.1573	0.15725228	5339	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	84.917	76.788	3	2.0488E-07	43599	160513_QHF_FH_JSI10Kac_6	85.231	77.145			0.906	0.96749	1.7559	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81892	0.96749	NaN	1	0	Median	1.0298	0.99214	NaN	1	0	Median	0.906	0.95916	NaN	1	0	Median	209350000	96342000	113010000	0	0	0	88992000	45314000	43678000	66724000	23230000	43494000	53634000	27798000	25837000	46594	5339	43862	281835;281836;281837	377991;377992	377992		2632	1	
SLPNWMNMAQPK	1	Unmodified	1415.669	0.66897616	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.784	74.5	2	7.6194E-05	64686	160511_QHF_FH_JSI12i_3	85.676	71.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46595	3962	43863	281838	377993	377993			1	
SLPPFIYR	0	Unmodified	991.5491	0.54910224	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.969	66.673	2	0.018365	57774	160511_QHF_FH_JSI12i_3	47.743	28.765			1.127	1.1451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.127	1.1451	NaN	1	0	Median	28781000	14778000	14003000	0	0	0	0	0	0	0	0	0	28781000	14778000	14003000	46596	3086	43864	281839	377994	377994			1	
SLPQSDPVLK	1	Unmodified	1082.5972	0.59717465	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				2	1	3	2	43.732	39.79	2	3.2155E-05	35476	160511_QHF_FH_JSI11i_1	96.331	54.222			0.94177	0.90801	29.565	8	2	Median	0.85025	0.69779	28.167	2	0	Median	0.80296	0.93719	NaN	1	0	Median	0.90491	0.87975	37.835	3	2	Median	1.0293	1.1157	8.7301	2	0	Median	1373600000	736420000	637160000	273320000	139640000	133680000	344860000	201150000	143710000	384610000	192660000	191950000	370800000	202980000	167810000	46597	4850	43865	281840;281841;281842;281843;281844;281845;281846;281847	377995;377996;377997;377998;377999;378000;378001;378002;378003;378004;378005;378006	377995			12	
SLPSDLAFNGDLAK	1	Unmodified	1446.7355	0.73545904	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.807	72.294	2	0.00033001	65846	160511_QHF_FH_JSI11i_1	95.401	57.108			0.83698	0.81651	23.543	4	1	Median	1.0156	0.85824	NaN	1	0	Median	0.45919	0.54676	NaN	1	1	Median	0.79441	0.77681	NaN	1	0	Median	0.88183	0.93443	NaN	1	0	Median	203890000	115050000	88838000	37833000	22093000	15740000	60726000	39642000	21084000	56142000	24547000	31595000	49191000	28772000	20418000	46598	4581	43866	281848;281849;281850;281851	378007;378008;378009	378007			3	
SLPSDVESR	0	Unmodified	988.48254	0.48253882	4604	Q9GZS1	POLR1E	DNA-directed RNA polymerase I subunit RPA49	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		23.051	22.379	2	0.042066	19238	160511_QHF_FH_JSI9i_1	37.549	13.594			1.7758	1.6108	7.6085	2	0	Median	2.044	1.6998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5428	1.5264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199950000	74247000	125700000	87445000	30086000	57359000	0	0	0	112500000	44161000	68341000	0	0	0	46599	4604	43867	281852;281853	378010;378011	378011			2	
SLPSQQMVNR	0	Unmodified	1158.5815	0.58154136	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	29.332	28.032	2	0.011628	24185	160511_QHF_FH_JSI9i_2	46.39	25.69			1.0965	1.2566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0965	1.2566	NaN	1	1	Median	35543000	18149000	17394000	0	0	0	0	0	0	0	0	0	35543000	18149000	17394000	46600	4679	43868	281854;281855	378012;378013	378013			2	
SLPSTSSTSSTK	1	Unmodified	1181.5776	0.57756142	2315	Q12857	NFIA	Nuclear factor 1 A-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	14.524	14.082	2	0.00026911	11785	160511_QHF_FH_JSI12i_1	76.143	31.696			1.0127	0.99641	13.307	4	0	Median	1.1849	0.95702	NaN	1	0	Median	0.95104	1.105	NaN	1	0	Median	1.0783	1.0374	NaN	1	0	Median	0.7936	0.81236	NaN	1	0	Median	204600000	104960000	99636000	49752000	20539000	29213000	48824000	27483000	21341000	47955000	23140000	24815000	58068000	33800000	24268000	46601	2315	43869	281856;281857;281858;281859;281860	378014;378015;378016;378017;378018;378019;378020;378021;378022	378016			9	
SLPSVLVIHLMR	0	Unmodified	1363.801	0.80097661	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	83.816	76.104	2;3	1.4319E-16	42839	160513_QHF_FH_JSI10Kac_6	142.1	121.89			0.9489	0.9819	5.5689	5	0	Median	1.1111	0.94269	NaN	1	0	Median	0.81918	0.98665	0.68292	2	0	Median	0.9489	0.92631	NaN	1	0	Median	0.99513	1.0692	NaN	1	0	Median	731320000	371920000	359400000	143900000	72260000	71639000	404110000	204780000	199320000	92317000	49801000	42516000	91001000	45080000	45922000	46602	5468	43870	281861;281862;281863;281864;281865	378023;378024;378025;378026;378027;378028;378029;378030;378031;378032	378030			10	
SLPSVLVIHLMR	0	Oxidation (M)	1379.7959	0.79589123	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			78.175	72.427	3	0.0019006	39441	160513_QHF_FH_JSI10Kac_6	51.957	37.604			0.56347	0.67149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56347	0.67149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33164000	22062000	11103000	0	0	0	33164000	22062000	11103000	0	0	0	0	0	0	46603	5468	43870	281866	378033	378033		2666	1	
SLPTPAVLLSPTK	1	Unmodified	1322.781	0.78095267	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		5								2	1	1	1	81.209	80.426	2	0.00030191	71586	160511_QHF_FH_JSI10i_2	73.781	53.478			0.8196	0.86641	15.063	4	0	Median	1.1156	0.97631	NaN	1	0	Median	0.53673	0.68725	NaN	1	0	Median	0.88353	0.90228	NaN	1	0	Median	0.7603	0.83197	NaN	1	0	Median	80227000	38074000	42153000	18639000	8282300	10356000	12378000	6879100	5498800	34496000	16364000	18132000	14714000	6548600	8165800	46604	3805	43871	281867;281868;281869;281870;281871	378034;378035;378036;378037	378037			3	
SLPTTVPESPNYR	0	Unmodified	1459.7307	0.73070802	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	48.73	48.05	2	3.0073E-05	42109	160511_QHF_FH_JSI9i_2	81.865	59.336			0.66658	0.66557	25.584	4	1	Median	0.64503	0.53335	NaN	1	0	Median	0.5078	0.60202	NaN	1	0	Median	0.98363	0.95744	NaN	1	0	Median	0.68884	0.73583	NaN	1	1	Median	373070000	208620000	164460000	94187000	57470000	36717000	61371000	42496000	18875000	125880000	55824000	70053000	91639000	52827000	38812000	46605	3132	43872	281872;281873;281874;281875;281876	378038;378039;378040;378041;378042	378042			5	
SLPVEEQPK	1	Unmodified	1025.5393	0.53932542	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	26.402	25.831	2	0.00050337	23061	160511_QHF_FH_JSI12i_1	79.474	51.3			1.0533	1.0937	3.3721	4	0	Median	1.3111	1.0848	NaN	1	0	Median	0.94142	1.1339	NaN	1	0	Median	1.0632	1.0459	NaN	1	0	Median	1.0435	1.1028	NaN	1	0	Median	899180000	446730000	452460000	167580000	67488000	100090000	291040000	148370000	142670000	235560000	126470000	109090000	205000000	104400000	100600000	46606	3101	43873	281877;281878;281879;281880	378043;378044	378043			2	
SLPVPQLVPETEDEK	1	Unmodified	1679.8618	0.86178177	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.28	73.784	2	9.1862E-06	67114	160511_QHF_FH_JSI12i_1	126.1	101.31			0.91107	0.88474	6.0314	4	0	Median	0.99232	0.81024	NaN	1	0	Median	0.74457	0.8779	NaN	1	0	Median	0.93071	0.89163	NaN	1	0	Median	0.89185	0.93696	NaN	1	0	Median	548940000	306190000	242750000	130660000	65956000	64701000	109230000	63990000	45243000	151950000	89003000	62950000	157100000	87243000	69852000	46607	99	43874	281881;281882;281883;281884	378045;378046;378047;378048	378046			4	
SLPVPQLVPETEDEKK	2	Unmodified	1807.9567	0.95674479	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	65.176	64.477	3	0.00094177	58655	160511_QHF_FH_JSI11i_1	52.862	35.161			0.8667	0.87305	10.361	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.77775	0.87305	NaN	1	0	Median	0.96581	0.91085	NaN	1	0	Median	0.99735	1.063	NaN	1	1	Median	79768000	44302000	35466000	0	0	0	32779000	20449000	12330000	23794000	12554000	11240000	23195000	11299000	11896000	46608	99	43875	281885;281886;281887	378049;378050	378049			2	
SLPVQGLSETVGILHK	1	Unmodified	1676.9461	0.94612052	4110	Q96HH9	GRAMD3	GRAM domain-containing protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	79.876	79.346	3	1.5979E-05	70763	160511_QHF_FH_JSI11i_3	90.754	81.704			0.98936	0.99817	9.9056	3	0	Median	NaN	NaN	NaN	0	0	Median	0.98936	1.1011	NaN	1	0	Median	0.97856	0.9032	NaN	1	0	Median	0.9963	0.99817	NaN	1	0	Median	195280000	105470000	89807000	0	0	0	20256000	11958000	8298400	72185000	39508000	32676000	102840000	54003000	48832000	46609	4110	43876	281888;281889;281890	378051;378052;378053;378054	378051			4	
SLPVSVPVWGFK	1	Unmodified	1314.7336	0.73360855	3978	Q96B36	AKT1S1	Proline-rich AKT1 substrate 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.3	0.64	1	5	4								3	4	3	96.375	96.181	2	0.00015269	79986	160511_QHF_FH_JSI10i_3	83.499	56.985			0.93133	1.0134	66.94	10	7	Median	NaN	NaN	NaN	0	0	Median	0.70666	0.87798	110.19	3	2	Median	1.341	1.3229	32.348	4	3	Linear	1.0035	1.1391	10.031	3	2	Median	609800000	315770000	294030000	0	0	0	118830000	70704000	48124000	306210000	151740000	154470000	184770000	93326000	91441000	46610	3978	43877	281891;281892;281893;281894;281895;281896;281897;281898;281899;281900	378055;378056;378057;378058;378059;378060;378061;378062;378063;378064;378065;378066;378067	378060			13	
SLPYNQPGTCYTLVALPK	1	Unmodified	2021.0292	0.029198224	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									2	2	1	82.149	81.79	2	3.2646E-07	74554	160511_QHF_FH_JSI11i_1	122.46	90.862			0.93823	1.0693	25.189	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0522	1.1968	15.924	2	2	Median	0.75064	0.75677	2.2961	2	0	Median	1.1014	1.105	NaN	1	0	Median	122860000	62550000	60306000	0	0	0	49534000	23009000	26525000	48327000	26646000	21681000	24995000	12895000	12101000	46611	5708	43878	281901;281902;281903;281904;281905	378068;378069;378070;378071;378072;378073;378074	378069			7	
SLQAQLQR	0	Unmodified	942.52468	0.52467841	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			22.453	21.539	2	0.0035778	18389	160511_QHF_FH_JSI9i_2	77.923	36.695			0.66413	0.68253	34.74	2	2	Median	1.0262	0.87258	NaN	1	1	Median	0.42981	0.53387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73796000	41858000	31938000	49434000	26149000	23284000	24362000	15709000	8653600	0	0	0	0	0	0	46612	4991	43879	281906;281907	378075;378076	378075			2	
SLQATESELR	0	Unmodified	1132.5724	0.57241646	2975	Q5TZA2	CROCC	Rootletin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.391	20.434	3	0.049894	17416	160511_QHF_FH_JSI9i_2	13.091	0			33.887	28.065	NaN	1	0	Median	33.887	28.065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	680370000	47889000	632490000	680370000	47889000	632490000	0	0	0	0	0	0	0	0	0	46613	2975	43880	281908	378077	378077			1	
SLQDIIAILGMDELSEEDK	1	Unmodified	2118.0402	0.04021642	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.5		3	9						8	4	5	6	5	100.88	96.65	2;3	9.7345E-122	49230	160513_QHF_FH_JSI12Kac_6	306.69	286.26			0.95096	0.97446	15.485	16	2	Median	1.3235	1.125	16.516	3	0	Plateau	0.84702	0.9948	5.7406	3	0	Plateau	1.0423	0.99991	7.3958	6	2	Median	0.78216	0.80456	25.509	4	0	Median	3995900000	2076800000	1919100000	357910000	182390000	175530000	468320000	250730000	217590000	2479500000	1279100000	1200400000	690210000	364600000	325620000	46614	851	43881	281909;281910;281911;281912;281913;281914;281915;281916;281917;281918;281919;281920;281921;281922;281923;281924;281925;281926;281927;281928	378078;378079;378080;378081;378082;378083;378084;378085;378086;378087;378088;378089;378090;378091;378092;378093;378094;378095;378096;378097;378098;378099;378100;378101;378102	378097			25	
SLQDIIAILGMDELSEEDK	1	Oxidation (M)	2134.0351	0.035131042	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	7	6.38		1	1						1	1		1	1	100.72	97.553	3	7.2615E-05	91447	160511_QHF_FH_JSI11i_3	83.776	74.246			1.1629	1.1201	38.234	3	2	Median	1.3638	1.1695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1629	1.1201	NaN	1	1	Median	0.54948	0.59085	NaN	1	1	Median	297910000	166340000	131570000	35679000	15505000	20173000	0	0	0	170320000	85670000	84647000	91911000	65166000	26745000	46615	851	43881	281929;281930;281931	378103;378104;378105	378103		375	3	
SLQEAEK	1	Unmodified	803.4025	0.40249759	2992	Q5VW32	BROX	BRO1 domain-containing protein BROX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	2	1	2	8.3967	7.0538	2	0.010491	5583	160511_QHF_FH_JSI10i_1	80.438	7.1899			0.80968	0.83496	79.244	7	6	Median	0.85171	0.7042	92.575	2	2	Median	0.76999	0.9125	118.02	2	2	Median	0.31597	0.30968	NaN	1	1	Median	1.1141	1.1848	49.496	2	1	Median	1045000000	642190000	402820000	335780000	183470000	152310000	326880000	208930000	117950000	187270000	126750000	60522000	195080000	123040000	72038000	46616	2992	43882	281932;281933;281934;281935;281936;281937;281938	378106;378107;378108;378109;378110;378111;378112;378113	378109			8	
SLQEANAEK	1	Unmodified	988.48254	0.48253882	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	2					2					1	2	1	10.663	6.9777	2	0.0011405	6812	160511_QHF_FH_JSI10i_1	79.974	17.257			5.0734	5.1507	121.56	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.3934	1.6727	NaN	1	1	Median	2.927	2.9102	142.02	2	0	Median	0.403	0.43445	NaN	1	0	Median	223290000	82996000	140300000	0	0	0	125460000	66816000	58641000	95223000	14187000	81036000	2614200	1993000	621210	46617	2493	43883	281939;281940;281941;281942	378114;378115;378116;378117	378117			4	
SLQEEPVEGFR	0	Unmodified	1289.6252	0.62518031	3204	Q712K3	UBE2R2	Ubiquitin-conjugating enzyme E2 R2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	2	2								2		1	1	44.645	43.635	2	6.282E-05	39506	160511_QHF_FH_JSI11i_1	101.97	59.784			1.1171	1.0676	15.837	4	2	Median	1.4704	1.2433	18.793	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99785	0.99618	NaN	1	1	Median	0.97542	1.0471	NaN	1	1	Median	272070000	116180000	155890000	95513000	38992000	56521000	0	0	0	131560000	53264000	78300000	44998000	23929000	21069000	46618	3204	43884	281943;281944;281945;281946	378118;378119;378120	378118			2	
SLQELFLAHILSPWGAEVK	1	Unmodified	2137.1572	0.15717593	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.67		3	6						9	3	6	5	4	99.437	95.353	2;3	5.933E-139	52536	160513_QHF_FH_JSI10Kac_6	235.84	191.26			0.85993	0.95	28.432	18	6	Median	1.1833	1.0411	14.336	3	1	Median	0.72931	0.86895	8.9777	6	4	Median	1.0273	0.96505	51.187	5	1	Median	0.93967	0.95985	20.417	4	0	Median	14372000000	7182600000	7189600000	2619500000	1202600000	1416900000	4772100000	2384900000	2387200000	3582800000	1854700000	1728100000	3397800000	1740400000	1657400000	46619	939	43885	281947;281948;281949;281950;281951;281952;281953;281954;281955;281956;281957;281958;281959;281960;281961;281962;281963;281964	378121;378122;378123;378124;378125;378126;378127;378128;378129;378130;378131;378132;378133;378134;378135;378136;378137;378138;378139;378140;378141;378142;378143;378144;378145	378143			25	
SLQENIAYGLTQKPTMEEITAAAVK	2	Unmodified	2705.3946	0.39458202	2211	Q03518	TAP1	Antigen peptide transporter 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	90.079	89.794	3;4	7.935E-25	77904	160511_QHF_FH_JSI12i_3	152.88	146.92			1.058	1.0329	5.7595	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0133	1.1348	NaN	1	0	Median	1.1104	1.0295	3.8669	2	0	Median	0.87048	1.0083	NaN	1	0	Median	291990000	138770000	153210000	0	0	0	21658000	12515000	9143800	198120000	85860000	112260000	72203000	40397000	31807000	46620	2211	43886	281965;281966;281967;281968	378146;378147;378148;378149;378150;378151;378152	378152			7	
SLQETIQSLK	1	Unmodified	1145.6292	0.62920306	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0		By MS/MS	By MS/MS		10	6.38	1						1	1			1	2		63.601	52.608	2	0.00047718	47119	160511_QHF_FH_JSI10i_1	84.17	25.494			1.349	1.2825	0.87631	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.349	1.2825	0.87631	2	2	Median	NaN	NaN	NaN	0	0	Median	3388600	1309100	2079500	0	0	0	0	0	0	3388600	1309100	2079500	0	0	0	46621	3074	43887	281969;281970;281971	378153;378154;378155	378153			3	
SLQGKSTTLFSR	1	Acetyl (K)	1365.7252	0.72522871	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.064	54.379	2	0.0050427	29471	160513_QHF_FH_JSI11Kac_6	67.385	40.871			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3503600	3503600	0	0	0	0	0	0	0	3503600	3503600	0	0	0	0	46622	1798	43888	281972	378156	378156	1816		1	
SLQLASQR	0	Unmodified	901.49813	0.49812931	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				20.352	19.423	2	0.048174	16488	160511_QHF_FH_JSI9i_2	46.39	8.7444			1.4138	1.1935	NaN	1	1	Median	1.4138	1.1935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35495000	15703000	19792000	35495000	15703000	19792000	0	0	0	0	0	0	0	0	0	46623	3117	43889	281973	378157	378157			1	
SLQLSAWESSIVDR	0	Unmodified	1589.8049	0.80493559	2812	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.33	83.139	2	0.0099079	72201	160511_QHF_FH_JSI12i_3	46.069	18.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46624	2812	43890	281974	378158	378158			1	
SLQLTGFQAYK	1	Unmodified	1254.6608	0.66083754	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.147	62.845	2	0.0018132	54004	160511_QHF_FH_JSI12i_2	65.5	27.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46625	4668	43891	281975	378159	378159			1	
SLQMYLER	0	Unmodified	1038.5168	0.51681584	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	51.234	50.418	2	2.08E-10	44480	160511_QHF_FH_JSI11i_3	167.33	111.32			1.0666	1.0205	20.596	7	1	Median	1.1983	1.0203	NaN	1	0	Median	1.0677	1.2612	29.941	2	0	Median	1.0549	1.0488	25.538	2	0	Median	0.91489	0.97715	16.305	2	1	Median	1789300000	869680000	919620000	209500000	92717000	116780000	353390000	160350000	193030000	649240000	303680000	345560000	577180000	312930000	264250000	46626	1525	43892	281976;281977;281978;281979;281980;281981;281982	378160;378161;378162;378163;378164;378165;378166;378167;378168;378169	378160			10	
SLQNAQK	1	Unmodified	787.41882	0.41881635	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	1	2	2	5.3383	5.0268	2	0.0089406	3045	160511_QHF_FH_JSI10i_1	81.297	21.656			0.84019	0.86014	18.459	6	0	Median	1.2009	1.0129	1.9782	2	0	Median	0.54507	0.62423	NaN	1	0	Median	0.81176	0.79871	2.2166	2	0	Median	0.86245	0.91188	NaN	1	0	Median	1288700000	699980000	588710000	281260000	128590000	152670000	322460000	197640000	124820000	359110000	197320000	161790000	325850000	176420000	149430000	46627	2560	43893	281983;281984;281985;281986;281987;281988;281989	378170;378171;378172;378173;378174;378175	378171			6	
SLQNAQKHYK	2	Acetyl (K)	1257.6466	0.64658446	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									4		2	1	1	18.77	11.028	2;3	2.517E-07	7306	160513_QHF_FH_JSI10Kac_6	128.81	101.38			0.73816	0.94808	26.318	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86577	1.0005	NaN	1	0	Median	0.62936	0.61887	NaN	1	0	Median	0.87039	0.94808	NaN	1	0	Median	35818000	21061000	14757000	0	0	0	14434000	6953200	7481000	16163000	11524000	4639700	5220600	2584200	2636400	46628	2560	43894	281990;281991;281992;281993	378176;378177;378178	378177	2540		3	
SLQPAVAEK	1	Unmodified	941.5182	0.51819605	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	20.591	19.999	2	0.0036617	17457	160511_QHF_FH_JSI12i_1	59.35	31.243			2.4983	1.9953	8.2078	3	1	Plateau	2.6929	2.2144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.4983	2.3461	NaN	1	1	Median	1.9077	1.9953	NaN	1	0	Median	150950000	50248000	100700000	38414000	10144000	28271000	0	0	0	49545000	20293000	29252000	62989000	19811000	43178000	46629	1443	43895	281994;281995;281996	378179;378180;378181	378180			3	
SLQPAVAEKQGHQWK	2	Acetyl (K)	1747.9006	0.90056731	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	49.485	39.791	3	0.001102	21667	160513_QHF_FH_JSI11Kac_6	72.898	46.169			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5395800	5395800	0	0	0	0	0	0	0	2834700	2834700	0	2561100	2561100	0	46630	1443	43896	281997;281998	378182;378183	378182	1424		2	
SLQPLAPR	0	Unmodified	880.51305	0.51305109	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	30.178	29.435	2	0.0021445	24874	160511_QHF_FH_JSI12i_2	82.305	52.498			1.1656	1.3572	9.9349	5	0	Median	1.6424	1.3978	NaN	1	0	Median	1.0963	1.3572	NaN	1	0	Median	1.1656	1.2018	NaN	1	0	Median	1.1745	1.2387	14.91	2	0	Median	390800000	176710000	214090000	83225000	32406000	50819000	79336000	35943000	43393000	93237000	42923000	50314000	135000000	65438000	69564000	46631	2573	43897	281999;282000;282001;282002;282003	378184;378185;378186;378187;378188;378189;378190;378191	378184			8	
SLQPSVLMQLK	1	Unmodified	1242.7006	0.70059386	4600	Q9GZQ3	COMMD5	COMM domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	73.334	72.858	2	8.4622E-05	63197	160511_QHF_FH_JSI12i_3	100.02	61.724			1.1226	0.99345	47.178	5	5	Median	1.1226	0.99345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0343	0.93876	21.834	2	2	Median	0.78242	0.80547	89.722	2	2	Median	140410000	75586000	64820000	16267000	7085700	9181100	0	0	0	65633000	32991000	32643000	58506000	35510000	22997000	46632	4600	43898	282004;282005;282006;282007;282008;282009;282010	378192;378193;378194;378195;378196;378197;378198	378197			7	
SLQQLAEER	0	Unmodified	1072.5513	0.55128709	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.11		3	1					1		1	1	2	1	37.921	35.335	2	0.0012837	30031	160511_QHF_FH_JSI12i_3	100.48	44.946			1.4287	1.4744	19.715	5	1	Median	1.6008	1.3643	NaN	1	0	Median	1.1736	1.4457	NaN	1	0	Median	1.7879	1.8113	29.106	2	1	Median	1.4287	1.4814	NaN	1	0	Median	255710000	117340000	138370000	55296000	22777000	32519000	71097000	37862000	33236000	79786000	39381000	40405000	49534000	17324000	32211000	46633	2470	43899	282011;282012;282013;282014;282015	378199;378200;378201;378202;378203	378203			1	
SLQQLQH	0	Unmodified	852.44537	0.44536545	399	O60232	SSSCA1	Sjoegren syndrome/scleroderma autoantigen 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	17.603	16.969	2	0.0011164	13759	160511_QHF_FH_JSI11i_2	124.37	100.17			0.92486	0.99166	22.382	5	2	Median	1.6354	1.473	NaN	1	0	Median	0.72975	0.87359	12.685	2	2	Median	0.98894	0.99166	NaN	1	0	Median	0.92486	0.99939	NaN	1	0	Median	277040000	127540000	149500000	47906000	17477000	30429000	100590000	50014000	50577000	83380000	39984000	43396000	45162000	20066000	25096000	46634	399	43900	282016;282017;282018;282019;282020	378204;378205;378206;378207	378206			4	
SLQQQQQQQQLQK	1	Unmodified	1611.8329	0.83288168	3526	Q8N4C8	MINK1	Misshapen-like kinase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	15.665	15.221	2	8.6708E-24	12640	160511_QHF_FH_JSI9i_1	157.24	131.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7211800	0	7211800	0	0	0	0	0	0	0	0	0	7211800	0	7211800	46635	3526	43901	282021;282022	378208;378209	378209			2	
SLQSENAALR	0	Unmodified	1087.5622	0.56218613	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0			By MS/MS		2	0		1										1		20.727	20.404	2	0.033179	16752	160511_QHF_FH_JSI11i_2	54.982	24.797			1.2136	1.2184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2136	1.2184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25174000	9909300	15264000	0	0	0	0	0	0	25174000	9909300	15264000	0	0	0	46636	1489;2481	43902	282023	378210	378210			1	
SLQSLEASLHAMESTR	0	Unmodified	1758.857	0.85704752	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	79.401	78.544	2;3	0.00035549	65940	160511_QHF_FH_JSI10i_3	65.949	54.157			1.0411	0.97292	19.782	4	4	Median	1.0633	0.90388	NaN	1	1	Median	0.83258	0.97715	32.641	2	2	Median	1.0194	1.0472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118160000	62320000	55839000	29776000	13468000	16308000	67091000	39075000	28016000	21293000	9777800	11515000	0	0	0	46637	5479	43903	282024;282025;282026;282027;282028	378211;378212;378213;378214;378215	378211			5	
SLQSVAEER	0	Unmodified	1017.5091	0.50908792	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.96	6.28	4	4	4			2	3	5	1	5	5	6	7	26.502	21.998	2	9.9774E-17	18403	160511_QHF_FH_JSI11i_2	179.8	104.49			0.99055	1.0562	7.8899	22	0	Median	1.1924	1.0899	7.8616	5	0	Median	0.88846	1.0173	7.0626	5	0	Median	1.0935	1.0719	10.051	6	0	Median	0.97247	1.0608	6.5281	6	0	Median	12989000000	6141600000	6847200000	2793800000	1163900000	1629900000	2497000000	1330300000	1166600000	4412300000	2076100000	2336200000	3285800000	1571300000	1714500000	46638	1951	43904	282029;282030;282031;282032;282033;282034;282035;282036;282037;282038;282039;282040;282041;282042;282043;282044;282045;282046;282047;282048;282049;282050;282051	378216;378217;378218;378219;378220;378221;378222;378223;378224;378225;378226;378227;378228;378229;378230;378231;378232;378233;378234;378235;378236;378237;378238;378239;378240;378241;378242;378243;378244;378245;378246;378247;378248;378249;378250;378251;378252;378253;378254	378241			39	
SLQTICSWFK	1	Unmodified	1268.6223	0.62234354	5013	Q9NUQ7	UFSP2	Ufm1-specific protease 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			82.391	81.108	2	0.00082171	68009	160511_QHF_FH_JSI10i_3	76.465	61.798			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46639	5013	43905	282052	378255	378255			1	
SLQTLALETEWELR	0	Unmodified	1687.8781	0.87810054	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		96.138	95.867	3	0.0034054	84058	160511_QHF_FH_JSI11i_2	39.033	29.627			0.99799	0.97264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99799	0.97264	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7317700	3312900	4004800	0	0	0	0	0	0	7317700	3312900	4004800	0	0	0	46640	3562	43906	282053	378256	378256			1	
SLQTVSGR	0	Unmodified	846.45593	0.45593014	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.29		4	2				1	1		2	1	2	3	12.24	10.581	2	0.00061167	8551	160511_QHF_FH_JSI12i_3	102.51	47.073			0.78013	0.75883	8.4504	7	0	Median	0.99325	0.84823	6.2853	2	0	Median	0.60452	0.74367	NaN	1	0	Median	0.77272	0.75281	1.1277	2	0	Median	0.78391	0.82285	13.292	2	0	Median	1189900000	620830000	569100000	200740000	109360000	91375000	206270000	134960000	71305000	386180000	182190000	203990000	396740000	194310000	202430000	46641	4575	43907	282054;282055;282056;282057;282058;282059;282060;282061	378257;378258;378259;378260;378261;378262;378263;378264;378265;378266;378267;378268	378268			12	
SLQVWQQTVDQR	0	Unmodified	1486.7528	0.75284044	3413	Q8IW35	CEP97	Centrosomal protein of 97 kDa	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				54.588	53.558	2	0.0021282	47037	160511_QHF_FH_JSI9i_2	69.979	54.408			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46642	3413	43908	282062	378269	378269			1	
SLQYEYK	1	Unmodified	929.44945	0.44944778	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	2	3	2	27.266	24.401	2	0.0043412	15251	160513_QHF_FH_JSI11Kac_4	97.798	54.798			0.7266	0.78681	58.418	8	1	Median	1.1066	0.94225	NaN	1	0	Median	0.68272	0.82895	14.628	2	0	Median	0.80729	0.78315	29.046	3	0	Plateau	1.4763	1.5959	107.73	2	1	Median	719370000	240010000	479360000	65435000	28926000	36509000	63263000	38057000	25206000	185720000	86324000	99395000	404950000	86703000	318250000	46643	552	43909	282063;282064;282065;282066;282067;282068;282069;282070	378270;378271;378272;378273;378274;378275;378276;378277;378278	378276			9	
SLRPEMENNPVLAPPSLSK	1	Unmodified	2078.083	0.083024708	890	P08069	IGF1R	Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			66.002	64.505	3	1.9293E-05	52829	160511_QHF_FH_JSI9i_3	77.468	62.313			0.87709	0.86239	31.676	2	1	Median	0.83778	0.68933	NaN	1	1	Median	0.91824	1.0789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38991000	20768000	18222000	21375000	11057000	10319000	17615000	9711900	7903600	0	0	0	0	0	0	46644	890	43910	282071;282072;282073	378279;378280;378281;378282;378283	378283			5	
SLSAERER	0	Unmodified	946.48321	0.48320752	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				5.8615	5.3386	2	0.025391	3337	160511_QHF_FH_JSI9i_3	70.919	23.262			1.4785	1.1844	NaN	1	0	Median	1.4785	1.1844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54184000	22502000	31682000	54184000	22502000	31682000	0	0	0	0	0	0	0	0	0	46645	2517	43911	282074	378284	378284			1	
SLSAIDR	0	Unmodified	760.40792	0.40791731	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			19.07	18.283	2	0.042889	15478	160511_QHF_FH_JSI10i_2	45.952	0			0.8321	1.0261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8321	1.0261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207690000	104930000	102770000	0	0	0	207690000	104930000	102770000	0	0	0	0	0	0	46646	736	43912	282075	378285	378285			1	
SLSAIYLEK	1	Unmodified	1022.5648	0.56481189	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.79		4	1					2		2	2	1	2	56.793	53.158	2	0.00034706	45600	160511_QHF_FH_JSI12i_2	91.867	62.717			1.0057	1.0282	22.029	7	0	Median	1.0504	0.8836	21.436	2	0	Median	0.93352	1.1263	41.924	2	0	Median	1.0751	1.1127	NaN	1	0	Median	0.98906	1.0312	2.904	2	0	Median	565640000	292680000	272960000	80415000	39765000	40650000	118650000	72454000	46196000	91226000	44095000	47131000	275350000	136370000	138980000	46647	2636	43913	282076;282077;282078;282079;282080;282081;282082	378286;378287;378288;378289;378290	378287			5	
SLSDSESDDSK	1	Unmodified	1168.4732	0.47315593	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	8.6869	4.1958	2	6.8521E-36	3715	160513_QHF_FH_JSI11Kac_3	199.11	179.33			0.9928	0.99597	11.53	10	0	Median	1.1199	0.91584	NaN	1	0	Median	0.77388	0.91612	7.9256	3	0	Median	1.0371	1.0034	13.999	3	0	Median	0.98591	1.0294	11.998	3	0	Median	2309100000	1255600000	1053400000	447250000	201050000	246200000	606440000	373360000	233090000	662630000	366230000	296400000	592730000	315010000	277710000	46648	2367	43914	282083;282084;282085;282086;282087;282088;282089;282090;282091;282092	378291;378292;378293;378294;378295;378296;378297;378298;378299;378300;378301	378295			11	
SLSDTVEK	1	Unmodified	877.43928	0.43927702	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.825	15.381	2	0.00894	13079	160511_QHF_FH_JSI12i_1	56.729	15.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46649	2516	43915	282093	378302	378302			1	
SLSDWHLAVK	1	Acetyl (Protein N-term)	1196.619	0.61897272	4238	Q96S82	UBL7	Ubiquitin-like protein 7	yes	yes	0	1	0	0		By MS/MS			2	0		1									1			72.799	72.026	2	0.0012346	64041	160511_QHF_FH_JSI10i_2	58.433	46.197			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46650	4238	43916	282094	378303	378303			1	
SLSEAMSVEK	1	Unmodified	1079.5169	0.51687542	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	35.2	33.863	2	5.5983E-05	28769	160511_QHF_FH_JSI12i_2	103.88	69.79			0.76864	0.85624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76864	0.85624	NaN	1	1	Median	84606000	50865000	33741000	0	0	0	0	0	0	0	0	0	84606000	50865000	33741000	46651	3090	43917	282095;282096;282097	378304;378305;378306	378304			3	
SLSEAPEDTSTR	0	Unmodified	1291.5892	0.58918874	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	19.959	17.187	2	9.2993E-11	14769	160511_QHF_FH_JSI10i_1	145.89	79.265			1.0044	1.0061	9.9473	6	1	Median	1.3707	1.1225	NaN	1	0	Median	0.82275	0.97938	NaN	1	0	Median	1.1374	1.0799	11.808	2	0	Median	0.91827	0.95265	9.5082	2	1	Median	277870000	128400000	149470000	52993000	21644000	31349000	76074000	40733000	35342000	72245000	29272000	42973000	76561000	36752000	39809000	46652	1512	43918	282098;282099;282100;282101;282102;282103	378307;378308;378309;378310;378311;378312;378313;378314;378315;378316;378317	378314			11	
SLSEGHPTAQHEK	1	Unmodified	1419.6743	0.67425577	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		5	7						2	1	5	4	4	6.3281	5.0736	2;3;4	4.0599E-99	3451	160511_QHF_FH_JSI12i_3	259.55	195.73			0.84719	0.86168	15.27	12	0	Median	1.3268	1.1274	NaN	1	0	Median	0.69133	0.81622	19.726	3	0	Median	0.83638	0.82087	9.3626	4	0	Median	0.8819	0.88746	13.477	4	0	Median	3191600000	1747800000	1443800000	159160000	69749000	89412000	197760000	101450000	96304000	1761900000	1019000000	742890000	1072800000	557640000	515180000	46653	1675	43919	282104;282105;282106;282107;282108;282109;282110;282111;282112;282113;282114;282115;282116;282117	378318;378319;378320;378321;378322;378323;378324;378325;378326;378327;378328;378329;378330;378331;378332;378333	378329			15	
SLSELLGPYGMK	1	Unmodified	1293.6639	0.663874	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	81.128	81.016	2	5.6718E-05	70356	160511_QHF_FH_JSI12i_3	135.43	105.9			1.6877	1.6876	31.325	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.415	1.3523	NaN	1	0	Median	2.0129	2.1061	NaN	1	1	Median	67738000	21526000	46211000	0	0	0	0	0	0	29829000	10347000	19482000	37909000	11179000	26729000	46654	5507	43920	282118;282119	378334;378335	378335			2	
SLSEQPVMDTATATEQAK	1	Unmodified	1905.899	0.89897191	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									1	2			47.553	47.127	2	3.2129E-16	41832	160511_QHF_FH_JSI9i_1	120.53	95.673			0.84366	0.90671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84366	0.90671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10087000	8356600	1730300	0	0	0	10087000	8356600	1730300	0	0	0	0	0	0	46655	1142	43921	282120;282121;282122	378336;378337;378338	378338			3	
SLSFLGTFILK	1	Unmodified	1224.7118	0.71181048	4693	Q9H3H5	DPAGT1	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.958	85.584	2	1.6248E-20	47875	160513_QHF_FH_JSI9Kac_6	173.32	100.84			0.85031	0.89781	27.499	4	0	Median	0.88472	0.74533	NaN	1	0	Median	0.79499	0.93574	NaN	1	0	Median	1.4999	1.4148	NaN	1	0	Median	0.81725	0.86141	NaN	1	0	Median	840860000	443480000	397390000	127710000	52065000	75647000	244670000	119860000	124820000	217850000	107050000	110800000	250630000	164500000	86126000	46656	4693	43922	282123;282124;282125;282126	378339;378340;378341;378342	378340			4	
SLSFVPGNDAEMSK	1	Unmodified	1480.6868	0.68679429	3654	Q8NFD5	ARID1B	AT-rich interactive domain-containing protein 1B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		57.459	57.041	2	4.228E-05	51709	160511_QHF_FH_JSI11i_1	78.342	42.382			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46657	3654	43923	282127	378343	378343			1	
SLSFVPGNDFEMSK	1	Unmodified	1556.7181	0.71809442	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.057	75.424	2	0.0078168	66228	160511_QHF_FH_JSI11i_2	49.5	33.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46658	167	43924	282128	378344	378344			1	
SLSGELR	0	Unmodified	760.40792	0.40791731	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	18.689	18.127	2	0.012621	14666	160511_QHF_FH_JSI11i_2	69.093	2.9555			1.085	1.1088	44.827	4	0	Median	1.2828	1.0834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1391	1.1593	NaN	1	0	Median	0.67505	0.72245	63.857	2	0	Median	517560000	277360000	240190000	71968000	38865000	33103000	0	0	0	140330000	68003000	72323000	305260000	170500000	134770000	46659	3438	43925	282129;282130;282131;282132	378345;378346	378345			2	
SLSGGASYVDFLCHMHK	1	Unmodified	1907.8658	0.86583806	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	71.446	70.859	3;4	2.95E-05	59792	160511_QHF_FH_JSI10i_3	76.85	70.687			0.86866	0.70311	25.74	6	0	Linear	1.6871	1.4118	NaN	1	0	Median	0.84912	0.99316	NaN	1	0	Median	0.78784	0.72532	2.9758	2	0	Median	1.0055	1.0036	14.074	2	0	Median	354030000	192440000	161590000	14543000	4516900	10026000	43447000	24010000	19437000	182710000	109830000	72877000	113340000	54083000	59254000	46660	1814	43926	282133;282134;282135;282136;282137;282138	378347;378348;378349;378350;378351	378349			1	
SLSGLILK	1	Unmodified	829.5273	0.52730417	3914;205	Q92973;O14787	TNPO1;TNPO2	Transportin-1;Transportin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	63.42	59.859	2	0.00041541	50253	160511_QHF_FH_JSI10i_3	109.01	29.896			1.0793	1.0495	18.687	12	0	Median	1.2343	0.99303	9.7424	3	0	Median	1.0061	1.1495	28.7	3	0	Median	1.1137	1.1364	5.5115	3	0	Plateau	1.3432	1.3949	21.785	3	0	Plateau	6011800000	2488000000	3523800000	1355000000	613530000	741470000	1108500000	487660000	620800000	1499000000	541020000	957930000	2049400000	845750000	1203600000	46661	3914;205	43927	282139;282140;282141;282142;282143;282144;282145;282146;282147;282148;282149;282150	378352;378353;378354;378355;378356;378357;378358;378359;378360;378361;378362;378363;378364;378365;378366;378367;378368;378369;378370;378371;378372;378373	378358			22	
SLSGPGQ	0	Unmodified	644.31295	0.3129543	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.68	11.185	1	0.0013719	8675	160511_QHF_FH_JSI9i_1	140.12	135.03			0.78215	0.92585	3.6872	3	0	Plateau	1.1273	0.92585	NaN	1	0	Median	0.78215	0.92595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85752	0.86862	NaN	1	0	Median	405880000	214580000	191300000	100520000	44781000	55737000	173580000	96295000	77287000	0	0	0	131780000	73502000	58279000	46662	257	43928	282151;282152;282153	378374;378375;378376	378376			3	
SLSHLYR	0	Acetyl (Protein N-term)	916.47667	0.47666558	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	1	0	0				By MS/MS	2	0		1											1	37.733	36.381	2	0.0077433	30940	160511_QHF_FH_JSI12i_2	56.122	29.001			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46663	5229	43929	282154	378377	378377			1	
SLSIEIGHEVK	1	Unmodified	1210.6558	0.65575216	258	O15155	BET1	BET1 homolog	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4.5	5.16		4	1						1	1		1	4	46.858	44.256	2;3	5.1661E-05	37854	160511_QHF_FH_JSI11i_2	73.273	51.227			0.84689	0.87553	25.516	5	1	Median	0.86256	0.76959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84689	0.87553	NaN	1	0	Median	0.79504	0.8782	30.721	3	1	Median	256250000	145610000	110640000	48256000	25642000	22614000	0	0	0	76561000	34909000	41652000	131440000	85058000	46378000	46664	258	43930	282155;282156;282157;282158;282159;282160	378378;378379;378380;378381;378382	378381			5	
SLSLGGHVGFDSLPDQLVSK	1	Unmodified	2055.0637	0.063669474	3853	Q92599	SEPT8	Septin-8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	85.62	85.544	3	1.3476E-10	74223	160511_QHF_FH_JSI12i_3	123.6	118.19			0.77167	0.7507	13.212	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73505	0.68374	NaN	1	0	Median	0.8101	0.82421	NaN	1	0	Median	139520000	78059000	61465000	0	0	0	0	0	0	38416000	18725000	19691000	101110000	59334000	41774000	46665	3853	43931	282161;282162	378383;378384	378384			1	
SLSLLAK	1	Unmodified	730.45889	0.45889025	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	42.761	42.538	2	0.014353	36335	160511_QHF_FH_JSI12i_3	66.993	15.421			0.47101	0.47884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47101	0.47884	NaN	1	1	Median	28804000	16449000	12355000	0	0	0	0	0	0	0	0	0	28804000	16449000	12355000	46666	4986	43932	282163	378385	378385			1	
SLSLNNNK	1	Unmodified	888.46649	0.46649483	3578	Q8N9N7	LRRC57	Leucine-rich repeat-containing protein 57	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			16.309	15.639	2	0.018223	13140	160511_QHF_FH_JSI10i_2	46.016	8.3701			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46667	3578	43933	282164	378386	378386			1	
SLSLQQQQDGDNGDSSK	1	Unmodified	1805.8028	0.80276334	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	23.247	22.786	2	6.996E-22	19878	160511_QHF_FH_JSI10i_1	205.72	189.47			1.2478	0.78357	29.618	3	0	Plateau	1.2479	1.0165	NaN	1	0	Median	1.2478	1.4149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7579	0.78357	NaN	1	0	Median	103640000	54691000	48950000	24340000	12281000	12059000	22503000	11780000	10723000	26003000	12512000	13491000	30795000	18118000	12677000	46668	4152	43934	282165;282166;282167;282168;282169;282170	378387;378388;378389;378390;378391	378390			5	
SLSNKLTLDK	2	Acetyl (K);Acetyl (Protein N-term)	1201.6554	0.65541781	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						1	2	1	77.854	69.358	2	1.9058E-06	27284	160513_QHF_FH_JSI10Kac_1	64.297	48.095			0.54723	0.56115	113.03	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1018	1.2479	NaN	1	0	Median	0.27179	0.25234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7582500	5150100	2432500	0	0	0	3945000	2276100	1668900	3637500	2874000	763520	0	0	0	46669	775	43935	282171;282172;282173;282174	378392;378393;378394;378395	378395	398		4	
SLSNTKPTVNEHDLLK	2	Unmodified	1794.9476	0.94757708	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	3	2	2	39.474	38.76	3;4	1.5631E-06	32371	160511_QHF_FH_JSI10i_3	120.63	100.24			0.90715	0.95553	30.461	9	3	Median	1.3026	1.1319	40.715	2	1	Median	0.8798	1.0149	4.6801	3	0	Median	0.87656	0.82968	4.5017	2	0	Median	0.68342	0.6831	51.341	2	2	Median	1193000000	557720000	635320000	92757000	38244000	54513000	328570000	143180000	185390000	575840000	291370000	284470000	195870000	84922000	110950000	46670	507	43936	282175;282176;282177;282178;282179;282180;282181;282182;282183	378396;378397;378398;378399;378400;378401;378402;378403;378404;378405;378406;378407;378408	378401			13	
SLSNVIAHEISHSWTGNLVTNK	1	Unmodified	2406.2292	0.22917167	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		85.024	84.438	4	0.019502	71603	160511_QHF_FH_JSI10i_3	25.408	17.416			0.73723	0.76028	28.222	2	0	Median	NaN	NaN	NaN	0	0	Median	0.54754	0.62274	NaN	1	0	Median	0.99264	0.9282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85980000	42557000	43424000	0	0	0	36010000	21292000	14718000	49971000	21265000	28706000	0	0	0	46671	943	43937	282184;282185	378409;378410	378410			2	
SLSPEQDIK	1	Unmodified	1015.5186	0.51858998	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	28.567	25.923	2	0.00015459	22926	160511_QHF_FH_JSI12i_1	88.948	55.151			1.0533	1.054	21.062	4	1	Median	0.99974	0.83169	NaN	1	0	Median	0.79434	0.93397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1751	1.249	6.9169	2	0	Median	646520000	334860000	311660000	165540000	85407000	80129000	254030000	133440000	120590000	0	0	0	226960000	116020000	110940000	46672	5552	43938	282186;282187;282188;282189;282190;282191	378411;378412;378413;378414;378415;378416;378417;378418	378412			8	
SLSPFAITYLDR	0	Unmodified	1381.7242	0.72416608	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	87.424	86.65	2	9.4871E-05	76995	160511_QHF_FH_JSI10i_2	112.13	90.666			1.0394	1.2013	17.39	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0897	1.3585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99135	1.0623	NaN	1	1	Median	128750000	71991000	56758000	0	0	0	88354000	49080000	39274000	0	0	0	40396000	22911000	17485000	46673	3074	43939	282192;282193	378419;378420	378420			2	
SLSPIIGK	1	Unmodified	813.496	0.49600404	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		41.223	40.466	2	0.0037967	34701	160511_QHF_FH_JSI11i_2	70.69	24.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46674	4719	43940	282194;282195	378421;378422	378422			2	
SLSPQDR	0	Unmodified	801.39808	0.39808091	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		8.5252	8.3281	2	0.023935	5957	160511_QHF_FH_JSI11i_2	49.358	31.664			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46675	1117	43941	282196	378423	378423			1	
SLSQIHEAAVR	0	Unmodified	1209.6466	0.64658446	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.57	0.495		3	4							3	3		1	25.301	24.431	2;3	1.0147E-05	20189	160511_QHF_FH_JSI10i_3	110.38	35.003			0.88657	1.012	27.33	3	3	Median	NaN	NaN	NaN	0	0	Median	0.90922	1.0277	2.1762	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63251	0.64063	NaN	1	1	Median	205530000	110450000	95077000	0	0	0	170670000	86801000	83872000	0	0	0	34855000	23649000	11206000	46676	5161	43942	282197;282198;282199;282200;282201;282202;282203	378424;378425;378426;378427;378428;378429;378430	378424			7	
SLSREDMESVLDK	1	Unmodified	1507.7188	0.7188227	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	50.488	49.72	2;3	4.9126E-05	43495	160511_QHF_FH_JSI9i_2	82.651	68.989			0.90068	0.99442	19.859	7	1	Median	1.1588	1.0072	1.8123	2	1	Median	0.7962	0.96362	14.972	2	0	Median	1.0625	1.0185	29.384	2	0	Median	0.66523	0.68089	NaN	1	0	Median	901310000	489850000	411450000	158150000	86262000	71888000	224560000	137980000	86584000	443420000	222310000	221110000	75176000	43305000	31871000	46677	899	43943	282204;282205;282206;282207;282208;282209;282210	378431;378432;378433;378434;378435;378436;378437;378438;378439	378433			9	
SLSRPTTETQFSNMGMEDVPLATSK	1	Unmodified	2726.2891	0.28913067	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							3	2			71.522	70.435	3	2.442E-32	62078	160511_QHF_FH_JSI9i_2	174.99	163.84			0.88754	0.90432	19.01	5	2	Median	1.4135	1.1396	18.843	3	2	Plateau	0.70363	0.83564	24.362	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161590000	83949000	77636000	88972000	42698000	46274000	72613000	41251000	31362000	0	0	0	0	0	0	46678	3378	43944	282211;282212;282213;282214;282215	378440;378441;378442;378443;378444;378445;378446;378447;378448;378449	378447			10	
SLSSLVVQLLQFQEEVFGK	1	Unmodified	2150.1623	0.16232089	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			102.57	95.697	2;3	1.3679E-222	57241	160513_QHF_FH_JSI10Kac_6	383.49	329.15			0.77769	0.92631	19.557	3	0	Median	1.3484	1.1458	NaN	1	0	Median	0.71158	0.84744	12.584	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1164100000	652910000	511140000	223970000	108980000	115000000	940080000	543940000	396140000	0	0	0	0	0	0	46679	3685	43945	282216;282217;282218;282219	378450;378451;378452;378453;378454;378455;378456	378455			7	
SLSSSLDDTEVKK	2	Unmodified	1407.7093	0.70930387	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	30.716	29.407	3	0.0012598	24773	160511_QHF_FH_JSI12i_2	61.409	50.69			0.4714	0.51137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4714	0.51137	NaN	1	1	Median	45258000	24990000	20268000	0	0	0	0	0	0	0	0	0	45258000	24990000	20268000	46680	671	43946	282220	378457	378457			1	
SLSSSPQAQPPRPAELSDEEVAELFQR	0	Unmodified	2967.4574	0.45739329	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			84.7	84.087	3	2.0597E-07	74061	160511_QHF_FH_JSI9i_2	63.122	55.256			0.99231	1.2094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99231	1.2094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35561000	26596000	8965600	0	0	0	35561000	26596000	8965600	0	0	0	0	0	0	46681	2841	43947	282221;282222	378458;378459;378460;378461	378458			4	
SLSSSPVKK	2	Unmodified	931.53385	0.53384611	4701	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	9.4983	9.5471	3	0.026169	7003	160511_QHF_FH_JSI11i_3	26.786	9.5555			1.2747	1.2169	32.734	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0687	0.96547	NaN	1	0	Median	1.5204	1.5339	NaN	1	0	Median	120080000	45135000	74948000	0	0	0	0	0	0	39814000	18935000	20878000	80270000	26200000	54070000	46682	4701	43948	282223;282224	378462	378462			1	
SLSSSVLPPSYASDR	0	Unmodified	1564.7733	0.77330111	3110	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	53.837	52.452	2	0.00025365	45045	160511_QHF_FH_JSI12i_2	101.93	76.712			0.34705	0.3791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34705	0.3791	NaN	1	1	Median	12412000	10426000	1986400	0	0	0	0	0	0	0	0	0	12412000	10426000	1986400	46683	3110	43949	282225	378463;378464	378464			2	
SLSSTSAGGKK	2	Unmodified	1021.5404	0.54038805	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		5.3687	4.8805	2;3	7.6355E-06	2899	160511_QHF_FH_JSI10i_3	109.66	72.105			1.3837	1.6528	13.387	3	0	Plateau	1.876	1.5532	NaN	1	0	Median	1.249	1.4685	18.369	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	216430000	88333000	128090000	90668000	31527000	59141000	125760000	56806000	68953000	0	0	0	0	0	0	46684	3164	43950	282226;282227;282228;282229;282230	378465;378466;378467;378468;378469;378470	378467			6	
SLSTPNVHNVSSSR	0	Unmodified	1483.7379	0.73791866	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	83.776	83.31	2	0.0065398	72304	160511_QHF_FH_JSI12i_3	61.353	45.782			0.13127	0.13904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13127	0.13904	NaN	1	1	Median	55732000	52744000	2988100	0	0	0	10123000	10123000	0	24423000	24423000	0	21187000	18198000	2988100	46685	4659	43951	282231;282232;282233	378471;378472;378473	378473			3	
SLSTTNVFACSDRPTVIYSSNHK	1	Unmodified	2583.2388	0.23875008	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			64.59	56.423	4	1.0167E-05	31067	160513_QHF_FH_JSI10Kac_6	72.99	65.889			1.0945	1.3122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0945	1.3122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31419000	12823000	18595000	0	0	0	31419000	12823000	18595000	0	0	0	0	0	0	46686	2734	43952	282234	378474	378474			1	
SLSVLSSSTIIANPDIPEAYK	1	Unmodified	2204.1576	0.15762944	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		92.401	91.914	2	8.191E-09	80778	160511_QHF_FH_JSI11i_2	97.551	84.674			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46687	1293	43953	282235;282236	378475;378476	378475			2	
SLSYSPKGFYHK	2	Acetyl (K)	1454.7194	0.71941505	5790				yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	81.977	73.004	2	0.0022391	40149	160513_QHF_FH_JSI11Kac_6	74.92	11.844	+		1.0788	0.90779	2.7462	4	0	Linear	1.0788	0.90779	0	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99446	0.95201	0	2	0	Median	NaN	NaN	NaN	0	0	Median	3031000000	1613700000	1417300000	2069900000	1115000000	954880000	0	0	0	961150000	498730000	462420000	0	0	0	46688	5790	43954	282237;282238;282239;282240;282241	378477;378478;378479;378480	378477	3560		4	
SLSYSPVER	0	Unmodified	1036.5189	0.51892433	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			31.511	30.572	2	0.01075	26721	160511_QHF_FH_JSI10i_2	58.981	16.585			0.85549	1.0633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85549	1.0633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168210000	83179000	85029000	0	0	0	168210000	83179000	85029000	0	0	0	0	0	0	46689	5474	43955	282242	378481	378481			1	
SLTAEIDRLK	1	Unmodified	1144.6452	0.64518747	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	49.212	48.516	2;3	2.1285E-19	42982	160511_QHF_FH_JSI10i_2	148.91	101.09			0.98062	1.0175	30.466	12	2	Median	1.0366	0.87872	8.4277	2	0	Median	0.8919	1.0867	0.96623	2	1	Median	1.0829	1.0522	43.782	4	1	Median	1.2189	1.244	32.856	4	0	Linear	1611800000	706090000	905730000	226360000	104190000	122170000	205050000	106680000	98367000	620730000	253560000	367170000	559680000	241670000	318020000	46690	1818	43956	282243;282244;282245;282246;282247;282248;282249;282250;282251;282252;282253;282254	378482;378483;378484;378485;378486;378487;378488;378489;378490;378491;378492;378493;378494;378495;378496;378497	378492			16	
SLTAHSLLPLAEK	1	Unmodified	1378.782	0.78201531	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	3	0			3								1	1	1	60.547	59.95	3	0.013514	50421	160511_QHF_FH_JSI10i_3	35.657	27.932			1.3235	1.2817	9.7261	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94563	1.0947	NaN	1	0	Median	1.371	1.2817	NaN	1	0	Median	1.3235	1.3073	NaN	1	0	Median	126860000	58303000	68562000	0	0	0	42248000	15446000	26802000	41366000	19855000	21511000	43252000	23003000	20249000	46691	3340	43957	282255;282256;282257	378498	378498			1	
SLTAHVIENYWK	1	Unmodified	1459.746	0.74596415	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.72	60.72	3	0.029141	53962	160511_QHF_FH_JSI11i_3	33.204	28.027			1.669	1.5177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.669	1.5177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32944000	14071000	18873000	0	0	0	0	0	0	32944000	14071000	18873000	0	0	0	46692	3059	43958	282258	378499	378499			1	
SLTANPELIDR	0	Unmodified	1227.6459	0.64591575	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	47.943	46.954	2	7.6247E-05	40494	160511_QHF_FH_JSI11i_2	95.573	57.28			1.1569	0.97656	6.0634	3	2	Plateau	1.1654	0.96959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0577	1.0474	NaN	1	1	Median	0.99352	1.0928	NaN	1	1	Median	229950000	114980000	114970000	68604000	34621000	33983000	0	0	0	101210000	47982000	53232000	60130000	32372000	27758000	46693	5523	43959	282259;282260;282261;282262	378500;378501;378502;378503	378503			4	
SLTAVFMWPGK	1	Unmodified	1235.6373	0.63726532	4318	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	86.084	76.642	2	2.0591E-10	40936	160513_QHF_FH_JSI12Kac_6	124.74	95.656			0.77801	0.82968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77801	0.82968	NaN	1	1	Median	44294000	25936000	18358000	0	0	0	0	0	0	0	0	0	44294000	25936000	18358000	46694	4318	43960	282263	378504	378504			1	
SLTELFVK	1	Unmodified	935.53278	0.53278348	4204	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	67.906	66.982	2	0.0029382	57775	160511_QHF_FH_JSI12i_2	83.265	47.385			1.3272	1.3313	5.1905	3	3	Median	1.453	1.2235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3272	1.3313	NaN	1	1	Median	1.1687	1.3448	NaN	1	1	Median	168790000	64137000	104650000	40316000	15404000	24913000	0	0	0	74246000	27376000	46870000	54229000	21358000	32872000	46695	4204	43961	282264;282265;282266	378505;378506;378507	378505			3	
SLTEYLQNVEQK	1	Unmodified	1450.7304	0.73037367	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.167	66.167	2	1.5558E-33	58912	160511_QHF_FH_JSI11i_3	237.84	193.53			0.71528	0.6891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71528	0.6891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	468170000	288700000	179470000	0	0	0	0	0	0	468170000	288700000	179470000	0	0	0	46696	1400	43962	282267	378508	378508			1	
SLTEYLQNVEQKK	2	Unmodified	1578.8253	0.82533668	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			61.576	60.052	3	0.0032356	50380	160511_QHF_FH_JSI10i_3	44.989	32.629			1.5267	1.7759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5267	1.7759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33088000	12468000	20620000	0	0	0	33088000	12468000	20620000	0	0	0	0	0	0	46697	1400	43963	282268	378509;378510	378510			2	
SLTFSPDSQLLVTASDDGYIK	1	Unmodified	2256.1162	0.11615855	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	2	3	3	95.636	95.394	2;3	3.0127E-57	86331	160511_QHF_FH_JSI10i_1	268.01	243.73			0.94912	0.98311	19.176	9	4	Median	1.2258	1.036	NaN	1	1	Median	0.71854	0.84493	0.25066	2	0	Median	1.4715	1.404	25.545	3	2	Plateau	0.91205	0.94527	10.755	3	1	Plateau	274220000	139550000	134680000	10163000	5521500	4641900	95705000	55301000	40404000	66524000	26590000	39934000	101830000	52135000	49695000	46698	4605	43964	282269;282270;282271;282272;282273;282274;282275;282276;282277	378511;378512;378513;378514;378515;378516;378517;378518;378519;378520;378521;378522	378519			12	
SLTGLIR	0	Unmodified	758.46504	0.46503826	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	43.793	42.948	2	0.011105	35274	160511_QHF_FH_JSI9i_3	71.949	9.2343			1.0255	1.0027	4.8341	4	0	Median	1.3449	1.0892	NaN	1	0	Median	0.86086	0.97529	NaN	1	0	Median	1.0511	0.99384	NaN	1	0	Median	1.0005	1.0115	NaN	1	0	Median	162700000	81841000	80859000	43515000	19498000	24016000	40885000	22693000	18192000	42987000	21046000	21942000	35313000	18604000	16709000	46699	5608	43965	282278;282279;282280;282281	378523;378524;378525	378524			3	
SLTGTLYLTATHLLFIDSHQK	1	Unmodified	2358.2583	0.25834654	5483	Q9Y217	MTMR6	Myotubularin-related protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	93.904	85.42	3;4	1.7076E-37	49825	160513_QHF_FH_JSI10Kac_6	168.27	152.29			0.77424	0.85807	16.009	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7709	0.88386	NaN	1	0	Median	0.79202	0.75765	24.421	2	0	Median	0.7776	0.83303	NaN	1	0	Median	347510000	190110000	157400000	0	0	0	114210000	66784000	47427000	138550000	71917000	66633000	94748000	51411000	43337000	46700	5483	43966	282282;282283;282284;282285;282286	378526;378527;378528;378529;378530	378529			4	
SLTGVVNAQALTSAFSPHTK	1	Unmodified	2028.064	0.064003825	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.79		3	6						3	4	4	3	1	82.282	79.714	2;3;4	1.2147E-25	41074	160513_QHF_FH_JSI10Kac_6	147.25	126.01			0.97759	0.9647	11.241	12	0	Median	1.3178	1.078	9.2732	4	0	Linear	0.92288	0.97549	13.185	4	0	Linear	1.0031	0.96221	14.857	3	0	Median	0.81088	0.92225	NaN	1	0	Median	1724800000	830490000	894280000	703550000	297160000	406380000	470110000	249810000	220300000	479430000	241680000	237750000	71679000	41838000	29841000	46701	309	43967	282287;282288;282289;282290;282291;282292;282293;282294;282295;282296;282297;282298	378531;378532;378533;378534;378535;378536;378537;378538;378539;378540;378541;378542;378543;378544;378545;378546;378547;378548;378549;378550;378551;378552;378553	378553			23	
SLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMR	1	Unmodified	3536.8814	0.88135878	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.823	92.103	4	3.1745E-115	53725	160513_QHF_FH_JSI10Kac_6	217.62	207.82			0.64337	0.76473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64337	0.76473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254000000	152950000	101050000	0	0	0	254000000	152950000	101050000	0	0	0	0	0	0	46702	309	43968	282299	378554;378555	378555			2	
SLTIAEFK	1	Unmodified	907.50148	0.50148335	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.32		5					2	4		3	3	2	3	60.316	53.921	2	0.00033307	46408	160511_QHF_FH_JSI11i_2	111.74	51.057			0.84483	0.97479	22.024	9	2	Median	1.221	1.0175	1.3496	2	1	Median	0.78582	0.97479	31.66	3	1	Plateau	0.99933	0.9964	21.32	2	0	Median	0.75636	0.84873	15.667	2	0	Median	768660000	404640000	364030000	116760000	62049000	54716000	188650000	111570000	77085000	305080000	156480000	148600000	158170000	74545000	83625000	46703	4266	43969	282300;282301;282302;282303;282304;282305;282306;282307;282308;282309;282310	378556;378557;378558;378559;378560;378561;378562;378563;378564;378565;378566;378567;378568;378569;378570	378563			15	
SLTINWEDYLAVK	1	Unmodified	1550.7981	0.7980593	2872	Q58FG1	HSP90AA4P	Putative heat shock protein HSP 90-alpha A4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.899	50.781	2	0.011999	43455	160511_QHF_FH_JSI12i_3	46.462	17.735			0.93686	0.90412	13.221	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0871	0.99273	NaN	1	0	Median	0.8074	0.82343	NaN	1	0	Median	189370000	101150000	88218000	0	0	0	0	0	0	92237000	48913000	43324000	97131000	52237000	44894000	46704	2872	43970	282311;282312	378571;378572;378573	378573			3	
SLTKDLGGNAK	2	Acetyl (K)	1144.6088	0.60880197	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							4				1	2	1	41.263	31.343	2	0.0028338	18016	160513_QHF_FH_JSI10Kac_4	74.162	43.592			0.82118	0.37879	52.795	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82118	0.96262	NaN	1	0	Median	0.38275	0.3781	NaN	1	0	Median	0.87313	0.92346	NaN	1	0	Median	7900400	4437400	3463000	0	0	0	2309100	1122300	1186900	3215700	2210700	1005000	2375600	1104400	1271200	46705	1698	43971	282313;282314;282315;282316	378574;378575;378576	378574	1712		3	
SLTLGIEPVSPTSLR	0	Unmodified	1568.8774	0.87737225	3041	Q6EMK4	VASN	Vasorin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	82.023	80.898	2	1.332E-11	71226	160511_QHF_FH_JSI11i_2	108.56	93.873			0.97562	1.0337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97562	1.0337	NaN	1	0	Median	13107000	6789100	6318200	0	0	0	0	0	0	0	0	0	13107000	6789100	6318200	46706	3041	43972	282317;282318	378577;378578	378578			2	
SLTLGPSLSLGSISGVSVK	1	Unmodified	1801.0197	0.019679395	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	96.354	96.217	2	9.1467E-11	85676	160511_QHF_FH_JSI11i_3	104.17	88.303			1.1074	1.1333	19.624	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1074	1.3435	NaN	1	0	Median	1.4073	1.3432	NaN	1	1	Median	0.94768	0.95627	NaN	1	0	Median	51316000	22601000	28716000	0	0	0	4632700	2816100	1816600	18180000	6088600	12091000	28504000	13696000	14808000	46707	478	43973	282319;282320;282321;282322	378579;378580;378581;378582;378583	378580			5	
SLTNDWEDHLAVK	1	Unmodified	1526.7365	0.73652168	898;880	P08238;P07900	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.96	6	40	8					12	8	17	15	21	21	61.74	58.241	2;3	6.4972E-155	48109	160511_QHF_FH_JSI10i_3	297.32	267.55			0.9219	0.95422	65.17	70	18	Median	1.0854	0.92286	31.179	17	3	Median	0.75964	0.92612	16.121	14	3	Median	0.96568	0.96451	119.45	18	6	Median	0.90721	0.98983	28.356	21	6	Median	68489000000	35808000000	32682000000	9832900000	4782900000	5050000000	11558000000	6324600000	5233700000	23868000000	13401000000	10466000000	23231000000	11299000000	11931000000	46708	898;880	43974	282323;282324;282325;282326;282327;282328;282329;282330;282331;282332;282333;282334;282335;282336;282337;282338;282339;282340;282341;282342;282343;282344;282345;282346;282347;282348;282349;282350;282351;282352;282353;282354;282355;282356;282357;282358;282359;282360;282361;282362;282363;282364;282365;282366;282367;282368;282369;282370;282371;282372;282373;282374;282375;282376;282377;282378;282379;282380;282381;282382;282383;282384;282385;282386;282387;282388;282389;282390;282391;282392;282393;282394;282395;282396	378584;378585;378586;378587;378588;378589;378590;378591;378592;378593;378594;378595;378596;378597;378598;378599;378600;378601;378602;378603;378604;378605;378606;378607;378608;378609;378610;378611;378612;378613;378614;378615;378616;378617;378618;378619;378620;378621;378622;378623;378624;378625;378626;378627;378628;378629;378630;378631;378632;378633;378634;378635;378636;378637;378638;378639;378640;378641;378642;378643;378644;378645;378646;378647;378648;378649;378650;378651;378652;378653;378654;378655;378656;378657;378658;378659;378660;378661;378662;378663;378664;378665;378666;378667;378668;378669;378670;378671;378672;378673;378674;378675;378676;378677;378678;378679;378680;378681;378682;378683;378684;378685;378686;378687;378688;378689;378690;378691;378692;378693;378694;378695;378696;378697;378698;378699;378700;378701;378702;378703;378704;378705;378706;378707;378708;378709;378710;378711;378712;378713;378714;378715;378716;378717;378718;378719;378720;378721;378722;378723;378724	378616			140	
SLTNSHLEK	1	Unmodified	1027.5298	0.52982336	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		3	3						2	3	1	3	1	12.442	10.476	2;3	7.5919E-06	8608	160511_QHF_FH_JSI9i_2	130.66	56.528			1.1226	1.146	61.333	8	5	Median	1.2558	1.0792	54.053	3	3	Median	0.99509	1.2169	NaN	1	0	Median	1.0035	0.95224	90.234	3	2	Median	1.3188	1.3193	NaN	1	0	Median	441920000	228180000	213740000	46630000	20651000	25978000	51675000	23061000	28614000	192570000	122470000	70097000	151050000	61996000	89052000	46709	4675	43975	282397;282398;282399;282400;282401;282402;282403;282404	378725;378726;378727;378728;378729;378730;378731;378732;378733;378734;378735	378727			11	
SLTPAVPVESKPDKPSGK	3	Unmodified	1835.9993	0.9992783	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	3.02		5	10					1		6	3	4	3	35.048	33.654	2;3;4	1.2729E-07	29226	160511_QHF_FH_JSI9i_2	99.569	76.766			0.63644	0.62392	25.488	13	13	Median	0.80043	0.67944	20.045	4	4	Median	0.72879	0.82652	3.9552	3	3	Plateau	0.50896	0.48507	32.826	4	4	Median	0.49728	0.51059	12.187	2	2	Median	4658500000	2501100000	2157500000	584180000	275200000	308980000	1168700000	602350000	566370000	2200800000	1199300000	1001500000	704840000	424220000	280620000	46710	1181	43976	282405;282406;282407;282408;282409;282410;282411;282412;282413;282414;282415;282416;282417;282418;282419;282420	378736;378737;378738;378739;378740;378741;378742;378743;378744;378745;378746;378747;378748;378749;378750;378751;378752;378753;378754;378755;378756	378750			21	
SLTPDDDVFQYLAHTYASR	0	Unmodified	2198.028	0.02801225	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	98.008	97.86	3	1.3469E-05	85831	160511_QHF_FH_JSI11i_2	77.023	64.36			1.0542	1.0314	25.231	5	0	Median	1.1206	0.98852	NaN	1	0	Median	0.69098	0.84426	NaN	1	0	Median	1.0542	1.0314	NaN	1	0	Median	1.2199	1.343	29.944	2	0	Median	150950000	69668000	81283000	27614000	10798000	16816000	32402000	16782000	15620000	41823000	19842000	21981000	49112000	22245000	26866000	46711	1052	43977	282421;282422;282423;282424;282425	378757;378758;378759;378760;378761	378759			5	
SLTPLDAR	0	Unmodified	871.47633	0.47633123	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	32.37	31.514	2	0.045987	26870	160511_QHF_FH_JSI11i_2	38.16	7.9753			1.4916	1.5641	46.041	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2129	2.166	NaN	1	0	Median	1.0054	1.1295	NaN	1	0	Median	131020000	53499000	77523000	0	0	0	0	0	0	81405000	28120000	53285000	49617000	25380000	24238000	46712	4736	43978	282426;282427	378762	378762			1	
SLTQSYLR	0	Unmodified	966.51345	0.51344502	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								2		1	31.577	31.072	2	0.0020899	26020	160511_QHF_FH_JSI12i_3	82.716	38.322			1.1213	1.2513	40.865	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76885	0.93726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6354	1.6705	NaN	1	0	Median	185780000	92969000	92813000	0	0	0	85361000	50273000	35088000	0	0	0	100420000	42696000	57725000	46713	1790	43979	282428;282429;282430	378763;378764	378764			2	
SLTQTFGDDK	1	Unmodified	1110.5193	0.51931826	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.654	30.086	2	0.00035594	27030	160511_QHF_FH_JSI12i_1	86.882	61.323			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46714	3465	43980	282431	378765	378765			1	
SLTSATSTSNIQSSASQPPRPQQGQVK	1	Unmodified	2784.4002	0.40021276	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				38.365	36.874	3	2.8942E-12	30075	160511_QHF_FH_JSI9i_3	79.762	59.787			1.4795	1.2405	NaN	1	1	Median	1.4795	1.2405	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15586000	5197500	10388000	15586000	5197500	10388000	0	0	0	0	0	0	0	0	0	46715	2311	43981	282432	378766	378766			1	
SLTSAWEDHLAVK	1	Unmodified	1455.7358	0.73579339	2869	Q58FF6	HSP90AB4P	Putative heat shock protein HSP 90-beta 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.071	49.954	3	0.047932	42859	160511_QHF_FH_JSI12i_3	20.585	7.8176			1.2815	1.2151	24.331	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5748	1.4432	NaN	1	0	Median	1.0428	1.023	NaN	1	0	Median	222130000	118700000	103430000	0	0	0	0	0	0	93248000	40420000	52828000	128880000	78278000	50603000	46716	2869	43982	282433;282434	378767	378767			1	
SLTSIIEYYYMWK	1	Unmodified	1695.8218	0.82183121	4414;2389	Q9BTC8;Q13330	MTA3;MTA1	Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.527	87.222	2	6.9218E-110	49655	160513_QHF_FH_JSI9Kac_6	270.63	218.35			0.87958	0.7645	16.826	3	2	Plateau	0.88105	0.7645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57026	0.54626	NaN	1	1	Median	0.62145	0.65537	NaN	1	1	Median	752390000	447830000	304570000	247440000	129600000	117840000	0	0	0	250620000	168840000	81780000	254330000	149390000	104950000	46717	4414;2389	43983	282435;282436;282437;282438	378768;378769;378770;378771;378772	378770			5	
SLTSSSSVR	0	Acetyl (Protein N-term)	964.48254	0.48253882	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.33	3			1						1	1	1	1	24.758	22.23	2	7.8777E-05	19703	160511_QHF_FH_JSI10i_1	95.741	75.459			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46718	5144	43984	282439;282440;282441;282442	378773;378774;378775;378776	378774			4	
SLTSWTNDQGAR	0	Unmodified	1334.6215	0.62149192	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	4	1	36.352	35.793	2	2.683E-11	31177	160511_QHF_FH_JSI9i_2	199.09	172.71			0.78151	0.82958	31.196	8	5	Median	0.74039	0.65058	NaN	1	1	Median	0.90863	1.0785	26.475	2	1	Median	0.89852	0.90609	35.971	4	3	Median	0.77321	0.76947	NaN	1	0	Median	711080000	373530000	337550000	103320000	56460000	46862000	159080000	82772000	76307000	345320000	175810000	169510000	103360000	58486000	44871000	46719	3250	43985	282443;282444;282445;282446;282447;282448;282449;282450	378777;378778;378779;378780;378781;378782;378783;378784;378785;378786;378787	378782			11	
SLTTITELQR	0	Unmodified	1160.6401	0.6401021	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.268	49.872	2	0.01085	42611	160511_QHF_FH_JSI12i_2	47.187	3.5361			1.3209	1.4452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3209	1.4452	NaN	1	0	Median	62008000	29783000	32225000	0	0	0	0	0	0	0	0	0	62008000	29783000	32225000	46720	4561	43986	282451	378788	378788			1	
SLTTLGLVISSLADQAAGK	1	Unmodified	1844.0255	0.025493054	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.5	102.37	3	0.019494	85002	160511_QHF_FH_JSI10i_3	31.111	5.6028			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46721	4659	43987	282452	378789	378789			1	
SLTTSQYLMHEVAK	1	Unmodified	1606.8025	0.80249275	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							1	2	5	4	53.276	52.75	2;3	1.0956E-40	45131	160511_QHF_FH_JSI12i_3	172.92	132.21			1.1876	1.2341	35.011	10	8	Median	1.86	1.5895	NaN	1	1	Median	1.264	1.507	21.785	2	2	Median	0.98756	0.93266	44.658	5	5	Median	1.199	1.2341	2.9328	2	0	Median	1217400000	593130000	624320000	153700000	74629000	79068000	254370000	102270000	152100000	517410000	277750000	239660000	291980000	138480000	153500000	46722	5147	43988	282453;282454;282455;282456;282457;282458;282459;282460;282461;282462;282463;282464	378790;378791;378792;378793;378794;378795;378796;378797;378798;378799;378800;378801	378801			12	
SLTYLSILR	0	Unmodified	1064.623	0.62299547	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.06			4					3	4	3	3	3	2	80.366	73.649	2	7.6464E-24	37868	160513_QHF_FH_JSI12Kac_6	182.69	116.01			1.0301	1.0015	12.414	10	2	Median	1.2326	1.0443	2.4334	3	1	Median	0.81677	0.96006	12.383	3	1	Median	0.95428	0.93878	13.66	3	0	Median	1.1119	1.1945	NaN	1	0	Median	1690200000	882410000	807770000	389000000	176780000	212220000	920170000	514630000	405540000	228250000	115620000	112630000	152770000	75381000	77391000	46723	937	43989	282465;282466;282467;282468;282469;282470;282471;282472;282473;282474;282475	378802;378803;378804;378805;378806;378807;378808;378809;378810;378811;378812;378813;378814;378815;378816;378817;378818;378819	378817			18	
SLVAEAFVSQIAAAEPWPENATLYQQLK	1	Acetyl (Protein N-term)	3115.5866	0.58661655	524	O75431	MTX2	Metaxin-2	yes	yes	0	1	0	0	By matching			By MS/MS	16	0									2	1			1	101.92	92.602	3	2.4493E-13	50939	160513_QHF_FH_JSI12Kac_6	31.37	25.59			1.0406	1.0038	8.5311	2	0	Median	1.245	1.0662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86983	0.94505	NaN	1	0	Median	68457000	35330000	33127000	51350000	26505000	24845000	0	0	0	0	0	0	17107000	8824700	8281800	46724	524	43990	282476;282477	378820	378820			1	
SLVALALIFAIQK	1	Unmodified	1385.8646	0.86462272	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	99.261	91.156	2	9.9961E-40	54692	160513_QHF_FH_JSI10Kac_6	173.32	134.3			0.70789	0.66726	22.571	3	3	Median	0.70789	0.61127	NaN	1	1	Median	0.79252	0.93717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63568	0.66726	NaN	1	1	Median	240450000	136590000	103860000	113510000	63081000	50428000	89123000	48344000	40779000	0	0	0	37817000	25166000	12651000	46725	5479	43991	282478;282479;282480;282481;282482	378821;378822;378823;378824;378825	378825			5	
SLVALLVETQMK	1	Unmodified	1330.753	0.75302336	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		97.232	96.892	2	1.0285E-11	80601	160511_QHF_FH_JSI10i_3	154.35	109.21			0.95033	0.89865	7.2494	3	0	Median	0.97884	0.79923	NaN	1	0	Median	0.78591	0.89865	NaN	1	0	Median	0.95033	0.91246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	127670000	60911000	66759000	37731000	16373000	21358000	35134000	21995000	13139000	54805000	22543000	32262000	0	0	0	46726	3685;3907	43992	282483;282484;282485	378826;378827;378828;378829;378830;378831;378832	378828			6	
SLVALLVETQMK	1	Oxidation (M)	1346.7479	0.74793799	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	1	0	By MS/MS				3	0			1							1				84.7	83.447	2	0.00016922	68437	160511_QHF_FH_JSI9i_3	87.568	72.308			0.38283	0.3084	NaN	1	0	Median	0.38283	0.3084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25015000	16782000	8232400	25015000	16782000	8232400	0	0	0	0	0	0	0	0	0	46727	3685;3907	43992	282486	378833;378834	378833		2280	2	
SLVASLAEPDFVVTDFAK	1	Unmodified	1907.988	0.98804492	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.81	0.634	5	9	2							2	4	5	5	101.38	101.3	2;3	1.4712E-268	88971	160511_QHF_FH_JSI11i_2	328.71	281.16			0.99364	1.0342	16.827	14	3	Median	1.3872	1.1654	7.8965	2	0	Median	0.89011	1.0808	7.7108	3	0	Median	0.99364	1.0169	24.764	4	2	Median	0.90607	0.9698	10.671	5	1	Median	6903000000	3457700000	3445300000	1239700000	534630000	705090000	1545100000	800200000	744950000	1251300000	609670000	641600000	2866800000	1513200000	1353700000	46728	1208	43993	282487;282488;282489;282490;282491;282492;282493;282494;282495;282496;282497;282498;282499;282500;282501;282502	378835;378836;378837;378838;378839;378840;378841;378842;378843;378844;378845;378846;378847;378848;378849;378850;378851;378852;378853;378854	378849			19	
SLVATFIVK	1	Unmodified	976.59572	0.59571809	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	69.949	69.137	2	1.4938E-05	59903	160511_QHF_FH_JSI12i_3	123.72	80.806			0.89928	0.83832	9.5299	4	0	Median	0.97434	0.78965	NaN	1	0	Median	0.77555	0.88678	NaN	1	0	Median	0.84745	0.79252	NaN	1	0	Median	0.95428	0.96171	NaN	1	0	Median	195820000	100120000	95699000	44483000	23985000	20498000	35068000	20900000	14167000	35637000	18531000	17105000	80631000	36703000	43928000	46729	4988	43994	282503;282504;282505;282506	378855	378855			1	
SLVDLTAVDVPTR	0	Unmodified	1384.7562	0.75619449	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.45	5	4					3			2	4	5	1	76.476	73.372	2	5.713E-41	65873	160511_QHF_FH_JSI9i_2	204.69	166.6			0.9859	1.0119	17.052	12	7	Median	1.1636	0.9715	4.8039	2	1	Median	0.79781	0.97058	5.0224	4	2	Linear	1.068	1.0278	26.336	5	4	Median	0.96409	1.0722	NaN	1	0	Median	1417000000	703760000	713220000	214050000	96869000	117180000	463220000	239050000	224160000	527650000	256050000	271610000	212070000	111800000	100270000	46730	534	43995	282507;282508;282509;282510;282511;282512;282513;282514;282515;282516;282517;282518	378856;378857;378858;378859;378860;378861;378862;378863;378864;378865;378866;378867;378868;378869	378866			13	
SLVDYENANK	1	Unmodified	1151.5459	0.54586736	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	30.492	29.681	2	1.8593E-07	24893	160511_QHF_FH_JSI12i_2	117.89	87.32			0.88172	1.0408	28.14	7	2	Median	0.8337	0.68875	3.1655	2	2	Median	0.88069	1.0694	3.8351	2	0	Median	1.026	1.0077	NaN	1	0	Median	1.2079	1.2928	23.404	2	0	Median	607400000	306760000	300640000	123560000	56288000	67269000	163780000	89629000	74147000	120770000	68000000	52772000	199300000	92844000	106450000	46731	5437	43996	282519;282520;282521;282522;282523;282524;282525	378870;378871;378872;378873;378874;378875;378876;378877	378872			8	
SLVEASSSGVSVLSLCEK	1	Unmodified	1850.9295	0.92954376	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							1	2	2	3	75.599	74.949	2	6.5015E-41	65285	160511_QHF_FH_JSI12i_3	160.31	137.4			0.9934	1.0239	21.566	4	1	Median	NaN	NaN	NaN	0	0	Median	0.6715	0.75511	NaN	1	0	Median	0.93798	0.9377	NaN	1	0	Median	1.066	1.1745	6.9744	2	1	Median	169680000	98366000	71315000	0	0	0	30267000	17300000	12966000	62459000	39854000	22605000	76956000	41211000	35745000	46732	5475	43997	282526;282527;282528;282529;282530;282531;282532;282533	378878;378879;378880;378881;378882;378883;378884;378885;378886;378887;378888;378889	378889			12	
SLVEIADTVPK	1	Unmodified	1170.6496	0.64960415	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.28	3	6	1			1	3	4		2	5	5	6	66.28	62.155	2	2.62E-07	33167	160513_QHF_FH_JSI10Kac_4	113.93	65.132			0.80571	0.85582	94.572	15	8	Median	0.93111	0.78857	9.7976	2	1	Median	0.60129	0.73786	38.059	4	1	Median	0.61233	0.62252	154.04	5	3	Median	1.0867	1.1719	37.364	4	3	Median	3057300000	1555900000	1501400000	365470000	171020000	194460000	622440000	352770000	269680000	1129600000	605000000	524600000	939750000	427080000	512670000	46733	127	43998	282534;282535;282536;282537;282538;282539;282540;282541;282542;282543;282544;282545;282546;282547;282548;282549;282550;282551	378890;378891;378892;378893;378894;378895;378896;378897;378898;378899;378900;378901;378902;378903;378904;378905;378906;378907;378908;378909;378910;378911;378912;378913;378914;378915	378899			25	
SLVEIIEHGLVDEQQK	1	Unmodified	1835.9629	0.9628928	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								3	4	1	93.708	93.499	2;3	4.5482E-22	78472	160511_QHF_FH_JSI10i_3	130.47	120.68			1.0185	1.0045	18.243	6	2	Median	NaN	NaN	NaN	0	0	Median	0.93163	1.0975	22.529	2	0	Median	1.1406	1.0781	18.968	3	2	Median	0.8551	0.85574	NaN	1	0	Median	530160000	267620000	262530000	0	0	0	170850000	92473000	78377000	267590000	127450000	140140000	91719000	47704000	44015000	46734	542	43999	282552;282553;282554;282555;282556;282557;282558;282559	378916;378917;378918;378919;378920;378921;378922;378923;378924;378925;378926;378927;378928;378929;378930;378931	378928			16	
SLVEQHK	1	Unmodified	839.45012	0.45011648	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	6.1701	5.7718	2	0.010374	3770	160511_QHF_FH_JSI12i_2	75.109	25.751			1.1194	0.94106	25.307	3	2	Median	1.1194	0.94106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3894	1.3885	NaN	1	1	Median	0.80676	0.86353	NaN	1	0	Median	158830000	83340000	75486000	49929000	25847000	24082000	0	0	0	67174000	32567000	34607000	41723000	24926000	16797000	46735	2587	44000	282560;282561;282562	378932;378933;378934	378932			3	
SLVESVSSSPNK	1	Unmodified	1232.6248	0.62484596	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.17	5	5	4				3	1		4	4	6	4	29.013	26.462	2	1.2875E-28	22258	160511_QHF_FH_JSI11i_2	164.66	129.37			1.0526	1.0192	19.714	14	8	Median	1.1324	1.0383	7.8695	3	2	Plateau	0.81471	0.95537	19.352	3	1	Median	1.0291	1.0129	13.179	4	3	Median	1.0162	1.1184	32.892	4	2	Median	1364600000	662070000	702490000	308480000	134780000	173700000	339940000	193500000	146440000	488930000	242500000	246430000	227220000	91297000	135920000	46736	4682	44001	282563;282564;282565;282566;282567;282568;282569;282570;282571;282572;282573;282574;282575;282576;282577;282578;282579;282580	378935;378936;378937;378938;378939;378940;378941;378942;378943;378944;378945;378946;378947;378948;378949;378950;378951;378952;378953;378954;378955;378956;378957;378958	378953			24	
SLVFANSISCIK	1	Unmodified	1337.7013	0.70132214	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	70.116	69.967	2	1.1259E-05	62361	160511_QHF_FH_JSI11i_3	117.52	96.82			1.3563	1.3303	12.071	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3031	1.2215	NaN	1	0	Median	1.4116	1.4488	NaN	1	0	Median	111190000	54722000	56468000	0	0	0	0	0	0	45424000	25518000	19906000	65765000	29203000	36562000	46737	4603	44002	282581;282582	378959;378960	378959			2	
SLVGATYVER	0	Unmodified	1093.5768	0.57677356	3470	Q8IYQ7	THNSL1	Threonine synthase-like 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	40.031	38.666	2	0.011777	33018	160511_QHF_FH_JSI12i_2	46.158	10.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46738	3470	44003	282583	378961	378961			1	
SLVGGLLQSK	1	Unmodified	1000.5917	0.59169534	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.942	56.108	2	2.9318E-15	46099	160511_QHF_FH_JSI9i_3	168.83	112.82			1.0406	1.0556	15.181	4	1	Median	1.3241	1.0522	NaN	1	0	Median	0.98467	1.1527	NaN	1	1	Median	1.0996	1.0591	NaN	1	0	Median	0.82521	0.81175	NaN	1	0	Median	1504400000	656020000	848390000	441530000	173970000	267560000	253260000	129520000	123740000	467570000	197100000	270470000	342060000	155430000	186630000	46739	1790	44004	282584;282585;282586;282587	378962;378963;378964;378965;378966;378967	378965			5	
SLVHDLFQK	1	Unmodified	1085.5869	0.58694431	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	3	3	2	53.663	52.874	2;3	8.362E-07	44350	160511_QHF_FH_JSI10i_3	109.66	98.07			0.98906	0.99083	20.858	9	3	Median	0.9485	0.79331	34.078	2	1	Median	0.78677	0.92343	21.604	3	0	Median	1.1781	1.1047	15.381	2	1	Median	0.95672	0.96976	5.8749	2	1	Median	1910600000	945380000	965260000	291020000	140210000	150810000	352240000	187870000	164370000	651450000	274970000	376480000	615940000	342330000	273610000	46740	4989	44005	282588;282589;282590;282591;282592;282593;282594;282595;282596;282597	378968;378969;378970;378971;378972;378973;378974;378975;378976;378977;378978;378979;378980;378981;378982;378983;378984;378985;378986;378987	378974			20	
SLVIELDK	1	Unmodified	915.5277	0.5276981	4093;3908	Q92925;Q6STE5;Q96GM5	SMARCD2;SMARCD3;SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	no	no	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	57.18	55.997	2	0.004068	48076	160511_QHF_FH_JSI12i_2	69.423	33.543			1.3161	1.2721	2.416	2	2	Median	1.4426	1.2506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2007	1.294	NaN	1	1	Median	39056000	18122000	20934000	14474000	8270300	6203300	0	0	0	0	0	0	24582000	9851400	14731000	46741	3908;4093	44006	282598;282599;282600	378988;378989;378990	378989			3	
SLVIKNSTSR	1	Acetyl (K)	1145.6404	0.64043645	462	O60934	NBN	Nibrin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		39.563	29.473	2	0.016874	17037	160513_QHF_FH_JSI11Kac_5	62.823	38.668			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1126700	1126700	0	0	0	0	0	0	0	1126700	1126700	0	0	0	0	46742	462	44007	282601	378991	378991	237		1	
SLVIPEK	1	Acetyl (Protein N-term)	826.48002	0.48001963	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					3	2	2	2	50.369	48.696	1;2	0.0029238	50139	160511_QHF_FH_JSI11i_1	49.358	8.4379			0.98558	1.0091	6.3045	9	0	Median	1.2547	1.0319	8.736	3	0	Plateau	0.84625	0.99719	4.3088	2	0	Median	1.0409	1.005	10.565	2	0	Median	0.968	1.0157	0.92381	2	0	Median	4461700000	2098900000	2362800000	2320300000	1024200000	1296200000	900450000	442980000	457460000	702780000	359120000	343670000	538150000	272600000	265550000	46743	1993	44008	282602;282603;282604;282605;282606;282607;282608;282609;282610	378992;378993;378994;378995;378996;378997	378992			6	
SLVIPEKFQHILR	1	Acetyl (K);Acetyl (Protein N-term)	1662.9457	0.94572659	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	94.241	86.056	2	2.4012E-05	50408	160513_QHF_FH_JSI10Kac_6	102.53	79.155			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46744	1993	44009	282611;282612;282613	378998;378999;379000	379000	2020		3	
SLVLDTK	1	Unmodified	774.44872	0.4487195	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	29.765	28.989	2	0.01035	24400	160511_QHF_FH_JSI11i_2	75.213	16.232			0.92943	0.98848	34.986	5	0	Median	0.92265	0.79216	NaN	1	0	Median	0.80703	0.98848	NaN	1	0	Median	1.3457	1.3333	54.437	2	0	Median	0.93396	1.0545	NaN	1	0	Median	646220000	292390000	353830000	108360000	44225000	64138000	129770000	64226000	65543000	253960000	107540000	146420000	154130000	76396000	77729000	46745	943	44010	282614;282615;282616;282617;282618	379001;379002;379003;379004	379003			4	
SLVMHTPPVLK	1	Unmodified	1220.6951	0.69511455	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							3	1	1	1	50.777	49.716	2;3	1.1213E-13	42279	160511_QHF_FH_JSI12i_3	136.63	104.7			1.323	1.185	31.574	4	1	Median	1.6056	1.3482	38.574	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0902	1.0415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	408960000	180520000	228440000	162800000	74999000	87806000	0	0	0	246150000	105520000	140640000	0	0	0	46746	1576	44011	282619;282620;282621;282622;282623;282624	379005;379006;379007;379008;379009;379010	379010			5	
SLVPAAELLESR	0	Unmodified	1283.7085	0.70851601	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	2	2	2	75.317	74.7	2	2.1051E-06	64687	160511_QHF_FH_JSI12i_2	125.74	80.579			1.0798	1.1007	25.06	6	0	Median	1.0297	0.90089	NaN	1	0	Median	0.74113	0.90254	NaN	1	0	Median	1.3496	1.3235	21.649	2	0	Median	1.2857	1.3015	28.106	2	0	Median	766740000	374280000	392460000	125390000	63503000	61883000	194150000	107420000	86728000	287150000	136200000	150940000	160050000	67151000	92903000	46747	2636	44012	282625;282626;282627;282628;282629;282630;282631	379011;379012;379013;379014;379015;379016;379017;379018	379012			8	
SLVQDLK	1	Unmodified	801.45962	0.45961853	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				25.857	24.84	2	0.013699	21320	160511_QHF_FH_JSI9i_2	69.383	0			3.1807	2.7013	NaN	1	1	Median	3.1807	2.7013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40950000	9994500	30955000	40950000	9994500	30955000	0	0	0	0	0	0	0	0	0	46748	3901	44013	282632	379019	379019			1	
SLVQEMVGSFGK	1	Unmodified	1280.6435	0.64347291	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	3	1		80.22	79.312	2	6.4341E-10	70075	160511_QHF_FH_JSI9i_2	131.82	109.67			1.2126	1.0906	25.59	6	3	Median	1.3335	1.0906	14.748	2	0	Median	1.2088	1.376	30.564	3	3	Median	0.82034	0.7849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	791980000	450140000	341830000	305100000	187130000	117960000	254070000	123590000	130480000	232810000	139420000	93389000	0	0	0	46749	552	44014	282633;282634;282635;282636;282637;282638	379020;379021;379022;379023;379024;379025;379026	379025			6	
SLVQEMVGSFGK	1	Oxidation (M)	1296.6384	0.63838754	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			49.655	48.088	2	9.9654E-05	40236	160511_QHF_FH_JSI10i_3	96.015	68.273			0.91766	1.0203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91766	1.0203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20282000	11642000	8640000	0	0	0	20282000	11642000	8640000	0	0	0	0	0	0	46750	552	44014	282639;282640	379027;379028	379027		206	2	
SLVQGELVTASK	1	Unmodified	1230.682	0.68196691	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	44.56	43.588	2	8.8908E-05	38360	160511_QHF_FH_JSI10i_2	91.855	12.92			0.83399	0.89371	4.4275	4	1	Median	1.0933	0.91473	NaN	1	0	Median	0.71607	0.87756	NaN	1	0	Median	0.91118	0.91015	NaN	1	0	Median	0.76334	0.83103	NaN	1	1	Median	134600000	71759000	62838000	25165000	11711000	13455000	31523000	16962000	14561000	52691000	30158000	22534000	25218000	12928000	12289000	46751	1440	44015	282641;282642;282643;282644	379029;379030;379031;379032	379032			4	
SLVQHILSLVSHPVLSFLYR	0	Unmodified	2307.3103	0.31032253	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.07	92.35	3	1.4269E-27	53910	160513_QHF_FH_JSI10Kac_6	161.04	140.67			0.62983	0.75192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62983	0.75192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156300000	91667000	64637000	0	0	0	156300000	91667000	64637000	0	0	0	0	0	0	46752	4018	44016	282645	379033;379034	379033			2	
SLVQIHEK	1	Unmodified	952.53418	0.53418046	3293	Q7Z7E8	UBE2Q1	Ubiquitin-conjugating enzyme E2 Q1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	18.501	18.514	2;3	0.0015903	14905	160511_QHF_FH_JSI12i_3	61.65	39.564			0.72424	0.70335	67.262	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93756	0.88505	78.479	2	2	Median	0.56875	0.57486	74.509	2	1	Median	470830000	299100000	171730000	0	0	0	0	0	0	130150000	69601000	60554000	340670000	229500000	111180000	46753	3293	44017	282646;282647;282648;282649;282650	379035;379036;379037;379038;379039	379037			5	
SLVQLHVETQR	0	Unmodified	1308.715	0.71499837	4840	Q9HBG6	IFT122	Intraflagellar transport protein 122 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.562	79.321	2	0.02218	68821	160511_QHF_FH_JSI12i_3	41.448	13.24			0.74745	0.7501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74745	0.7501	NaN	1	0	Median	813750000	411800000	401940000	0	0	0	0	0	0	0	0	0	813750000	411800000	401940000	46754	4840	44018	282651	379040	379040			1	
SLVSDIGK	1	Unmodified	817.45453	0.45453316	3798	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	34.089	32.759	2	0.0099826	27884	160511_QHF_FH_JSI12i_2	55.531	1.9762			0.26129	0.29371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26129	0.29371	NaN	1	0	Median	93578000	73470000	20108000	0	0	0	0	0	0	0	0	0	93578000	73470000	20108000	46755	3798	44019	282652;282653	379041;379042	379041			2	
SLVSGLIR	0	Unmodified	843.5178	0.51780212	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							2	2	1	1	52.426	51.252	2	0.00821	42775	160511_QHF_FH_JSI10i_3	57.177	18.386			0.65594	0.73293	20.067	6	1	Median	0.97761	0.83829	16.62	2	0	Median	0.57363	0.70386	11.318	2	0	Median	0.68438	0.72072	NaN	1	0	Median	0.4647	0.5132	NaN	1	1	Median	328300000	175070000	153230000	142230000	70705000	71524000	126700000	70986000	55716000	39383000	19623000	19761000	19982000	13752000	6229300	46756	3860	44020	282654;282655;282656;282657;282658;282659	379043;379044;379045;379046;379047	379044			5	
SLVSKGTLVQTK	2	Acetyl (K)	1301.7555	0.7554662	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	61.355	50.584	2	3.0579E-05	28247	160513_QHF_FH_JSI12Kac_4	99.215	72.101			0.9375	0.96899	7.1974	6	0	Median	1.0638	0.86294	NaN	1	0	Median	0.79183	0.9535	0.24801	2	0	Median	1.0227	1.0075	NaN	1	0	Median	0.9375	1.0266	6.1322	2	0	Median	39293000	22320000	16973000	5451700	2640800	2811000	10245000	5643100	4602000	7878100	5090700	2787400	15718000	8944900	6772700	46757	969;1097;1099;1098	44021	282660;282661;282662;282663;282664;282665;282666	379048;379049;379050;379051;379052;379053;379054	379051	736;739		7	
SLVSKGTLVQTK	2	Unmodified	1259.7449	0.74490152	969;1099;1097;1098	P10412;Q02539;P16401;P16403;P16402	HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1C;HIST1H1D	Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.2;Histone H1.3	no	no	0	0	0	1	By MS/MS				3	0			1							1				29.732	28.352	3	0.00039144	23070	160511_QHF_FH_JSI9i_3	76.326	58.739			0.22157	0.1766	NaN	1	1	Median	0.22157	0.1766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53237000	43626000	9610700	53237000	43626000	9610700	0	0	0	0	0	0	0	0	0	46758	969;1097;1099;1098	44021	282667	379055	379055			1	
SLVSVTK	1	Unmodified	732.43815	0.43815481	898;2870	P08238;Q58FF7;Q58FF8	HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	6.32	4	7	4		1	3	3	4	4	6	8	9	7	26.783	21.646	1;2	0.00075137	5923	160513_QHF_FH_JSI9Kac_3	113.7	8.3053			0.98556	1.0024	59.492	30	2	Median	1.0694	0.90526	6.6012	6	0	Median	0.88975	1.0523	74.573	8	1	Median	1.0983	1.1075	82.838	9	1	Median	0.94291	1.009	18.175	7	0	Median	44114000000	22791000000	21322000000	6463800000	3296200000	3167600000	11607000000	5456200000	6151200000	15427000000	8914400000	6512200000	10616000000	5124500000	5491500000	46759	898;2870	44022	282668;282669;282670;282671;282672;282673;282674;282675;282676;282677;282678;282679;282680;282681;282682;282683;282684;282685;282686;282687;282688;282689;282690;282691;282692;282693;282694;282695;282696;282697	379056;379057;379058;379059;379060;379061;379062;379063;379064;379065;379066;379067;379068;379069;379070;379071;379072;379073;379074;379075;379076;379077;379078;379079;379080;379081;379082;379083;379084;379085;379086;379087;379088;379089;379090;379091;379092;379093;379094;379095;379096;379097;379098;379099;379100;379101;379102;379103;379104;379105;379106;379107	379079			52	
SLVSWHYCMIDIEK	1	Unmodified	1779.8324	0.83241267	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			79.497	73.856	2;3	1.1336E-96	40393	160513_QHF_FH_JSI10Kac_6	252.88	214.25			0.71567	0.84577	15.404	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71567	0.84577	15.404	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	289790000	157920000	131870000	0	0	0	289790000	157920000	131870000	0	0	0	0	0	0	46760	1085	44023	282698;282699	379108;379109;379110	379109			2	
SLVTASPLWASFLESLK	1	Unmodified	1848.0033	0.003301049	743	O95905	ECD	Protein SGT1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	102.79	102.74	2;3	4.0573E-11	91889	160511_QHF_FH_JSI11i_3	139.6	119.22			1.1624	1.0964	12.663	5	4	Median	NaN	NaN	NaN	0	0	Median	0.97908	1.1475	19.833	2	1	Median	1.1696	1.0894	0.9068	2	2	Median	1.2899	1.3198	NaN	1	1	Median	176390000	82128000	94263000	0	0	0	19360000	9544700	9815500	87159000	39754000	47405000	69871000	32829000	37042000	46761	743	44024	282700;282701;282702;282703;282704	379111;379112;379113;379114;379115	379111			5	
SLVTEAENSQHQQK	1	Unmodified	1597.7696	0.76961272	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.85	19.863	3	0.00019146	16131	160511_QHF_FH_JSI12i_3	85.457	71.104			1.4372	1.3951	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4372	1.3951	NaN	1	1	Median	30820000	13132000	17688000	0	0	0	0	0	0	0	0	0	30820000	13132000	17688000	46762	988	44025	282705	379116	379116			1	
SLVTWGNFAWMYYHMGR	0	Oxidation (M)	2133.9553	0.95532177	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.302	80.018	3	2.2033E-11	46022	160513_QHF_FH_JSI10Kac_6	123.36	119.76			0.74033	1.0165	19.826	4	0	Linear	0.89141	0.75579	NaN	1	0	Median	0.80587	0.94386	NaN	1	0	Median	1.2587	1.1872	NaN	1	0	Median	1.0327	1.0947	NaN	1	0	Median	427060000	208640000	218430000	96544000	46840000	49704000	173460000	90115000	83344000	75624000	28948000	46675000	81438000	42732000	38706000	46763	942	44026	282706;282707;282708;282709	379117;379118;379119	379119		517;518	3	
SLVTWGNFAWMYYHMGR	0	Unmodified	2117.9604	0.96040715	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.163	83.835	3	4.9071E-112	46654	160513_QHF_FH_JSI9Kac_6	245.48	237.09			0.96261	0.95749	19.413	4	0	Median	0.98861	0.82995	NaN	1	0	Median	0.78404	0.91992	NaN	1	0	Median	1.3806	1.3062	NaN	1	0	Median	0.93729	0.9966	NaN	1	0	Median	1408300000	798450000	609840000	183560000	102450000	81115000	990000000	588630000	401370000	133210000	54432000	78783000	101510000	52934000	48575000	46764	942	44026	282710;282711;282712;282713	379120;379121;379122;379123;379124;379125	379122			6	
SLVTWGNYAWVYYHLGR	0	Unmodified	2084.0268	0.026830458	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	89.406	80.874	3	1.3737E-103	44723	160513_QHF_FH_JSI9Kac_6	238.49	220.67			0.74931	0.7583	33.944	6	5	Median	0.63305	0.56902	31.292	2	2	Median	0.68709	0.80996	NaN	1	1	Median	0.75056	0.72186	50.211	2	2	Median	0.94327	0.99021	NaN	1	0	Median	9720400000	6296000000	3424400000	4595500000	3038200000	1557400000	847580000	409490000	438080000	4073700000	2745300000	1328400000	203610000	103010000	100590000	46765	213	44027	282714;282715;282716;282717;282718;282719	379126;379127;379128;379129;379130;379131	379129			6	
SLVTWGNYAWVYYHMGR	0	Oxidation (M)	2117.9782	0.97816571	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.678	75.435	3	1.5937E-43	42611	160513_QHF_FH_JSI10Kac_6	176.33	167.05			0.85748	0.95087	42.454	4	0	Median	0.64023	0.55881	NaN	1	0	Median	0.68309	0.79683	NaN	1	0	Median	1.517	1.4831	NaN	1	0	Median	1.0764	1.1347	NaN	1	0	Median	392450000	231890000	160560000	81817000	51365000	30451000	194960000	126050000	68913000	40030000	16395000	23636000	75640000	38077000	37563000	46766	941	44028	282720;282721;282722;282723	379132;379133;379134;379135	379135		516	4	
SLVVSQFTTFLSLIEIPLK	1	Unmodified	2134.2289	0.22894389	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	102.41	94.298	3	8.8957E-26	53944	160513_QHF_FH_JSI9Kac_6	156.39	141.3			0.90448	1.0446	20.227	3	2	Median	1.6327	1.4129	NaN	1	0	Median	0.83228	0.9623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90448	1.0446	NaN	1	1	Median	104940000	43017000	61926000	46241000	10133000	36108000	56265000	31792000	24473000	0	0	0	2437000	1092400	1344600	46767	2540	44029	282724;282725;282726	379136;379137;379138	379136			3	
SLVWGAEAVQALR	0	Unmodified	1398.7619	0.76194857	4404	Q9BSV6	TSEN34	tRNA-splicing endonuclease subunit Sen34	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	80.899	80.434	2	8.2049E-05	69823	160511_QHF_FH_JSI12i_3	114.83	58.271			0.87672	0.96115	35.567	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63215	0.74743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2159	1.236	NaN	1	0	Median	44618000	23527000	21091000	0	0	0	15818000	10171000	5647500	0	0	0	28800000	13356000	15443000	46768	4404	44030	282727;282728	379139;379140;379141	379140			3	
SLWGLVSK	1	Acetyl (Protein N-term)	930.51747	0.51746776	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.158	93.809	2	0.0011271	85139	160511_QHF_FH_JSI12i_1	51.854	41.44			0.73075	0.86573	3.9813	4	0	Linear	1.1871	0.96686	NaN	1	0	Median	0.78106	0.88475	NaN	1	0	Median	0.92353	0.89695	NaN	1	0	Median	0.93036	0.93016	NaN	1	0	Median	74418000	37328000	37090000	16523000	6460300	10063000	23217000	13308000	9908300	17947000	8928900	9018100	16731000	8630400	8100900	46769	1529	44031	282729;282730;282731;282732	379142;379143;379144;379145;379146;379147;379148;379149	379145			8	
SLWISMQDYAVSK	1	Unmodified	1526.7439	0.74391524	2704	Q15751	HERC1	Probable E3 ubiquitin-protein ligase HERC1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		58.004	57.581	2	0.013773	52240	160511_QHF_FH_JSI11i_1	53.751	7.7546			1.3009	1.2552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3009	1.2552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105200000	50874000	54328000	0	0	0	0	0	0	105200000	50874000	54328000	0	0	0	46770	2704	44032	282733	379150	379150			1	
SLWQQPSVGDILR	0	Unmodified	1497.794	0.79397698	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.121	82.93	2	0.00065541	72020	160511_QHF_FH_JSI12i_3	67.776	51.886			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46771	405	44033	282734	379151	379151			1	
SLWYTLHFMK	1	Unmodified	1324.6638	0.66381443	5103	Q9NXC5	MIOS	WD repeat-containing protein mio	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.363	72.106	3	1.6617E-10	40210	160513_QHF_FH_JSI10Kac_6	140.16	113.38			1.2006	1.168	17.789	4	0	Median	1.5443	1.3161	NaN	1	0	Median	0.86884	1.0288	NaN	1	0	Median	1.0627	1.0365	NaN	1	0	Median	1.3563	1.4702	NaN	1	0	Median	643490000	308260000	335230000	146270000	54131000	92138000	340670000	183950000	156720000	94708000	37136000	57572000	61847000	33046000	28801000	46772	5103	44034	282735;282736;282737;282738	379152;379153;379154;379155;379156;379157	379157			5	
SLYAENLPGNVGEFTAYR	0	Unmodified	1999.964	0.96395543	4201	Q96PV6	LENG8	Leukocyte receptor cluster member 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.811	80.686	2	0.00017827	69763	160511_QHF_FH_JSI12i_2	90.926	77.945			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46773	4201	44035	282739	379158	379158			1	
SLYAIFSQFGQILDILVSR	0	Unmodified	2169.1834	0.18339068	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			105.32	99.601	2;3	8.1224E-71	58988	160513_QHF_FH_JSI10Kac_6	258.16	230.76			0.82763	0.98176	8.9307	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82763	0.98176	8.9307	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	768340000	421490000	346850000	0	0	0	768340000	421490000	346850000	0	0	0	0	0	0	46774	920	44036	282740;282741	379159;379160	379159			2	
SLYALFSQFGHVVDIVALK	1	Unmodified	2106.1514	0.15136227	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.498	91.001	2;3	1.7869E-277	54139	160513_QHF_FH_JSI10Kac_6	332.61	275.44			0.75062	0.77836	17.146	4	0	Median	0.96936	0.82488	NaN	1	0	Median	0.55606	0.66265	14.552	2	0	Median	0.92133	0.88484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1888800000	1026400000	862350000	670720000	328880000	341840000	932500000	569260000	363230000	285570000	128300000	157270000	0	0	0	46775	906	44037	282742;282743;282744;282745	379161;379162;379163;379164;379165;379166	379166			5	
SLYASSPGGVYATR	0	Unmodified	1427.7045	0.70449327	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.93	4	4	1					4	4	4	4	4	5	45.574	40.171	2	2.6489E-30	34771	160511_QHF_FH_JSI11i_2	212.09	167.67			1.0329	1.1105	7.6631	14	1	Median	1.3125	1.1143	7.811	3	0	Median	0.97338	1.1534	4.8587	3	0	Median	1.0602	1.0288	7.1718	4	0	Median	1.0213	1.1188	4.8655	4	1	Median	2161700000	1076200000	1085500000	402040000	183670000	218370000	677630000	351300000	326320000	666450000	332370000	334080000	415570000	208850000	206730000	46776	913	44038	282746;282747;282748;282749;282750;282751;282752;282753;282754;282755;282756;282757;282758;282759;282760;282761;282762	379167;379168;379169;379170;379171;379172;379173;379174;379175;379176;379177;379178;379179;379180;379181;379182;379183;379184;379185;379186;379187;379188;379189;379190;379191;379192;379193	379180			27	
SLYDEVAAQGEVVR	0	Unmodified	1534.7627	0.76273643	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.6	0.49	2	3									2	3		59.797	59.258	2	1.6027E-06	53822	160511_QHF_FH_JSI11i_1	132.56	96.04			0.72114	0.76385	15.359	5	3	Median	NaN	NaN	NaN	0	0	Median	0.6705	0.80509	7.4355	2	1	Median	0.74682	0.70494	21.036	3	2	Median	NaN	NaN	NaN	0	0	Median	256840000	145100000	111740000	0	0	0	116570000	71756000	44809000	140280000	73348000	66929000	0	0	0	46777	878	44039	282763;282764;282765;282766;282767	379194;379195;379196;379197;379198;379199;379200	379194			7	
SLYDEVAAQGEVVRK	1	Unmodified	1662.8577	0.85769944	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	3.08	2	10	4					1		2	4	6	5	53.822	52.488	2;3	1.3386E-51	45064	160511_QHF_FH_JSI12i_3	256.47	221.05			0.92043	0.93403	21.722	16	6	Median	0.9994	0.83889	0.99086	2	1	Median	0.9123	1.0623	10.304	3	2	Median	0.96539	0.94181	29.967	6	0	Median	0.7395	0.83882	13.086	5	3	Median	6097600000	3102900000	2994700000	636380000	303690000	332690000	1520800000	715900000	804870000	2091900000	1106000000	985840000	1848500000	977240000	871280000	46778	878	44040	282768;282769;282770;282771;282772;282773;282774;282775;282776;282777;282778;282779;282780;282781;282782;282783;282784	379201;379202;379203;379204;379205;379206;379207;379208;379209;379210;379211;379212;379213;379214;379215;379216;379217;379218;379219;379220;379221;379222;379223;379224;379225;379226	379224			26	
SLYESFVSSSDR	0	Unmodified	1375.6256	0.62557424	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.552	52.317	2	2.2088E-05	44888	160511_QHF_FH_JSI12i_3	131.82	91.467			1.1815	1.1933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1815	1.1933	NaN	1	1	Median	55497000	25602000	29895000	0	0	0	0	0	0	0	0	0	55497000	25602000	29895000	46779	1142	44041	282785	379227	379227			1	
SLYGLGSSRPR	0	Unmodified	1191.636	0.63601977	83	CON__Q9DCV7			yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	42.84	42.341	2	0.012775	38332	160511_QHF_FH_JSI11i_1	60.436	7.7203		+	0.41406	0.42057	22.091	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49965	0.49168	NaN	1	0	Median	0.34313	0.35975	NaN	1	0	Median	10506000000	6308400000	4198000000	0	0	0	0	0	0	6327300000	3976800000	2350400000	4179100000	2331500000	1847500000	46780	83	44042	282786;282787	379228	379228			1	
SLYHDISGDTSGDYRK	1	Unmodified	1812.8279	0.82785588	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		5	10							2	5	4	4	32.658	32.118	3;4	4.3665E-08	27094	160511_QHF_FH_JSI11i_3	119.95	102.46			0.95159	0.83199	43.29	13	7	Median	0.99553	0.87422	7.0015	2	1	Median	0.89114	1.0726	57.404	4	2	Median	0.94498	0.87663	38.594	4	3	Median	1.0554	1.0628	53.991	3	1	Plateau	774920000	395580000	379350000	64750000	28015000	36734000	119980000	58668000	61308000	368230000	180530000	187700000	221970000	128360000	93608000	46781	1723	44043	282788;282789;282790;282791;282792;282793;282794;282795;282796;282797;282798;282799;282800;282801;282802	379229;379230;379231;379232;379233;379234;379235;379236;379237;379238;379239;379240;379241;379242;379243;379244	379229			14	
SLYHSVEWRPAEEPR	0	Unmodified	1854.9013	0.90129559	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			50.652	42.04	3	0.061013	23185	160513_QHF_FH_JSI10Kac_6	30.133	17.015			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46782	3593	44044	282803	379245	379245			1	
SLYNVNGLK	1	Unmodified	1006.5447	0.54474515	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.5	6.5		2						2			1	1	2	47.004	41.14	2	2.693E-05	35331	160511_QHF_FH_JSI12i_2	103.83	35.411			0.83919	0.94162	13.3	4	0	Median	NaN	NaN	NaN	0	0	Median	0.73669	0.89126	NaN	1	0	Median	1.1693	1.1498	NaN	1	0	Median	0.83919	0.92136	10.85	2	0	Median	308890000	177510000	131390000	0	0	0	120750000	64913000	55841000	4309700	1668400	2641200	183830000	110930000	72904000	46783	2307	44045	282804;282805;282806;282807	379246;379247;379248	379246			3	
SLYPLTFIQVK	1	Unmodified	1307.7489	0.74892426	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	3	1	3	2	92.93	90.644	2	7.5257E-07	83535	160511_QHF_FH_JSI10i_2	113.22	108.02			0.87692	0.84384	8.4929	9	1	Median	0.92956	0.84384	5.9719	3	1	Plateau	0.60942	0.7421	NaN	1	0	Median	0.91604	0.86727	13.226	3	0	Median	0.78579	0.8218	5.2267	2	0	Median	259980000	135340000	124640000	64273000	31440000	32832000	26917000	14862000	12055000	110500000	57382000	53113000	58296000	31657000	26638000	46784	1094	44046	282808;282809;282810;282811;282812;282813;282814;282815;282816	379249;379250;379251;379252;379253;379254;379255;379256;379257;379258;379259	379258			11	
SLYPSLEDLK	1	Acetyl (Protein N-term)	1205.618	0.61796967	151	O00560	SDCBP	Syntenin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.43	7	1			1					2	2	3	2	86.627	85.244	1;2	2.0597E-08	78640	160511_QHF_FH_JSI11i_1	88.948	72.172			1.0068	0.96369	70.133	9	0	Median	1.1748	0.97713	1.9597	2	0	Median	2.047	2.4093	130.54	2	0	Median	1.0068	0.96166	47.621	3	0	Plateau	0.99184	1.0291	1.5013	2	0	Median	1328500000	654410000	674130000	303940000	135920000	168020000	343800000	187220000	156580000	355880000	171830000	184050000	324910000	159430000	165480000	46785	151	44047	282817;282818;282819;282820;282821;282822;282823;282824;282825	379260;379261;379262;379263;379264;379265;379266;379267;379268;379269;379270	379261			11	
SLYPSLEDLKVDK	2	Acetyl (Protein N-term)	1547.8083	0.80828964	151	O00560	SDCBP	Syntenin-1	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				83.447	82.607	2	0.0083958	73545	160511_QHF_FH_JSI9i_1	47.971	34.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9216900	9216900	0	9216900	9216900	0	0	0	0	0	0	0	0	0	0	46786	151	44048	282826	379271	379271			1	
SLYPSSEIQLNNK	1	Unmodified	1491.7569	0.75692277	580	O75886	STAM2	Signal transducing adapter molecule 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.269	52.746	2	0.00035414	45576	160511_QHF_FH_JSI11i_2	71.016	45.63			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46787	580	44049	282827	379272	379272			1	
SLYQSAGVAPESFEYIEAHGTGTK	1	Unmodified	2541.2023	0.2023478	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.45	3	11	10					1	5	5	6	10	9	74.027	71.547	2;3	2.3179E-64	36536	160513_QHF_FH_JSI9Kac_6	196.28	177.99			1.0229	1.0163	21.447	28	9	Median	1.2809	1.076	24.203	5	3	Median	1.0167	1.2095	4.9676	6	2	Median	0.99316	0.93451	19.589	10	3	Median	0.91633	0.9418	22.602	7	1	Median	13422000000	6781200000	6640500000	1328200000	615420000	712740000	2703100000	1359700000	1343400000	4922000000	2615400000	2306700000	4468400000	2190600000	2277700000	46788	1650	44050	282828;282829;282830;282831;282832;282833;282834;282835;282836;282837;282838;282839;282840;282841;282842;282843;282844;282845;282846;282847;282848;282849;282850;282851;282852;282853;282854;282855;282856;282857	379273;379274;379275;379276;379277;379278;379279;379280;379281;379282;379283;379284;379285;379286;379287;379288;379289;379290;379291;379292;379293;379294;379295;379296;379297;379298;379299;379300;379301;379302;379303;379304;379305;379306;379307;379308;379309;379310;379311;379312;379313;379314;379315;379316;379317;379318;379319;379320;379321;379322;379323;379324;379325;379326;379327;379328;379329;379330;379331;379332;379333;379334;379335;379336;379337;379338;379339;379340;379341;379342;379343;379344;379345;379346;379347;379348;379349;379350;379351;379352;379353;379354;379355;379356	379342			84	
SLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITR	1	Acetyl (K)	3862.865	0.86497625	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS			By matching	16	0									2	1			1	84.493	75.466	4	4.9919E-13	41442	160513_QHF_FH_JSI9Kac_6	90.246	80.784			1.6524	1.567	8.443	2	0	Median	1.9375	1.6634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4092	1.4762	NaN	1	0	Median	197640000	85997000	111650000	73180000	30325000	42854000	0	0	0	0	0	0	124460000	55672000	68791000	46789	1650	44051	282858;282859	379357	379357	1669		1	
SLYQVLASVK	1	Unmodified	1106.6336	0.63356015	2238	Q05DH4	FAM160A1	Protein FAM160A1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				75.749	74.294	2	0.033178	61103	160511_QHF_FH_JSI9i_3	46.158	23.418			0.95721	0.81927	NaN	1	0	Median	0.95721	0.81927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8732600	3977500	4755100	8732600	3977500	4755100	0	0	0	0	0	0	0	0	0	46790	2238	44052	282860	379358	379358			1	
SLYSDHELR	0	Unmodified	1118.5356	0.53563702	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								1			2	22.928	21.832	2	0.0041947	18639	160511_QHF_FH_JSI9i_2	67.993	44.564			1.0736	1.032	9.61	2	2	Median	1.2718	1.1046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90634	0.96422	NaN	1	1	Median	32340000	15513000	16828000	15024000	5911300	9112300	0	0	0	0	0	0	17317000	9601500	7715300	46791	4684	44053	282861;282862;282863	379359;379360;379361	379361			3	
SLYSEKEVFIR	1	Acetyl (K)	1411.7347	0.73473076	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.373	68.055	2	2.086E-10	37193	160513_QHF_FH_JSI11Kac_6	126.71	75.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9196900	9196900	0	0	0	0	0	0	0	9196900	9196900	0	0	0	0	46792	2328	44054	282864	379362	379362	2424		1	
SLYSFIK	1	Unmodified	856.46945	0.46945494	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	59.492	58.617	2	0.00057297	51614	160511_QHF_FH_JSI11i_3	132.09	62.662			0.94234	0.94449	14.773	8	0	Median	1.2347	1.0236	31.2	2	0	Median	0.75024	0.88778	13.33	2	0	Median	0.90535	0.88188	6.0102	2	0	Median	0.94549	0.98501	2.2517	2	0	Median	4495200000	2173100000	2322100000	620460000	274150000	346300000	1038200000	590100000	448070000	1172800000	559640000	613180000	1663800000	749220000	914550000	46793	932	44055	282865;282866;282867;282868;282869;282870;282871;282872	379363;379364;379365;379366;379367;379368;379369;379370;379371;379372;379373;379374;379375;379376;379377	379363			15	
SLYSFIKGDTSGDYRK	2	Acetyl (K)	1877.9159	0.9159426	932	P09525	ANXA4	Annexin A4	yes	yes	1	0	0	2				By MS/MS	16	0									1				1	76.175	66.733	3	0.0049273	35067	160513_QHF_FH_JSI12Kac_6	67.646	51.152			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10793000	0	10793000	0	0	0	0	0	0	0	0	0	10793000	0	10793000	46794	932	44056	282873	379378	379378	686		1	
SLYSMIK	1	Unmodified	840.44153	0.44152563	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	3	1	3	2	49.747	46.935	2	0.0033031	40949	160511_QHF_FH_JSI11i_3	105.39	30.08			1.0358	1.0239	12.87	9	0	Median	1.4165	1.2088	14.543	3	0	Median	0.97696	1.1132	NaN	1	0	Median	1.0358	0.98304	7.1403	3	0	Median	0.87695	0.92145	14.903	2	0	Median	3324400000	1491100000	1833300000	664790000	266080000	398710000	384280000	160920000	223360000	1238900000	556740000	682140000	1036500000	507340000	529130000	46795	891	44057	282874;282875;282876;282877;282878;282879;282880;282881;282882	379379;379380;379381;379382;379383;379384;379385;379386;379387;379388;379389;379390;379391;379392	379379			14	
SLYTDESSKPGK	2	Unmodified	1310.6354	0.63541065	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							3	2	3	1	14.79	14.477	2;3	1.3901E-05	11354	160511_QHF_FH_JSI12i_3	88.021	58.68			1.0072	0.9841	69.544	6	2	Median	0.79283	0.68833	NaN	1	0	Median	0.62903	0.77299	NaN	1	0	Median	1.2124	1.1731	92.105	3	2	Plateau	1.2796	1.2529	NaN	1	0	Median	439600000	197960000	241640000	56531000	27174000	29357000	70868000	35274000	35593000	184850000	77495000	107350000	127350000	58019000	69335000	46796	4525	44058	282883;282884;282885;282886;282887;282888;282889;282890;282891	379393;379394;379395;379396;379397;379398;379399;379400;379401	379401			9	
SLYVAEYHSEPVEDEKP	1	Unmodified	1990.916	0.91600218	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.546	1	11	5							2	2	6	7	48.854	48.129	2;3	1.034E-49	41445	160511_QHF_FH_JSI11i_2	182.02	169.25			1.1393	1.1051	24.86	12	2	Median	1.1393	0.95984	1.0802	2	0	Median	0.82326	1.0239	16.521	2	0	Median	1.3869	1.3534	27.538	4	1	Median	1.0267	1.0815	24.129	4	1	Median	1934500000	835550000	1098900000	262880000	125310000	137570000	398410000	183580000	214830000	696570000	267410000	429160000	576620000	259250000	317370000	46797	1271	44059	282892;282893;282894;282895;282896;282897;282898;282899;282900;282901;282902;282903;282904;282905;282906;282907;282908	379402;379403;379404;379405;379406;379407;379408;379409;379410;379411;379412;379413;379414;379415;379416;379417;379418;379419;379420;379421;379422;379423;379424;379425;379426;379427;379428	379420			27	
SLYVPVMITWNPHWYR	0	Unmodified	2061.0295	0.029472995	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.394	82.698	2;3	2.9104E-88	48116	160513_QHF_FH_JSI10Kac_6	253.88	232.82			1.1399	1.0737	15.53	7	0	Median	1.2967	1.113	11.514	2	0	Median	0.96077	1.1292	NaN	1	0	Median	1.1501	1.0826	1.176	2	0	Median	0.8217	0.86483	21.163	2	0	Median	2573400000	1153200000	1420300000	590990000	228580000	362410000	242900000	125020000	117880000	1193300000	512690000	680600000	546260000	286870000	259390000	46798	3307	44060	282909;282910;282911;282912;282913;282914;282915;282916	379429;379430;379431;379432;379433;379434;379435;379436;379437;379438;379439	379438			11	
SLYVPVMITWNPHWYR	0	Oxidation (M)	2077.0244	0.024387617	3307	Q86TG7	PEG10	Retrotransposon-derived protein PEG10	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				87.581	78.962	3	5.5907E-17	43726	160513_QHF_FH_JSI9Kac_6	140.84	130.92			1.1061	0.92751	NaN	1	0	Median	1.1061	0.92751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204470000	75349000	129130000	204470000	75349000	129130000	0	0	0	0	0	0	0	0	0	46799	3307	44060	282917	379440	379440		2243	1	
SLYYASFLEVLVR	0	Unmodified	1558.8395	0.83953018	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		14.4	2.06				1		1			3	1	2	2		96.889	87.783	2	4.0187E-17	50130	160513_QHF_FH_JSI9Kac_6	145.41	110.18			1.2326	1.0479	NaN	1	0	Median	1.2326	1.0479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144950000	80790000	64164000	144950000	80790000	64164000	0	0	0	0	0	0	0	0	0	46800	571	44061	282918;282919;282920;282921;282922	379441;379442;379443;379444;379445	379443			5	
SLYYYIQQDTK	1	Unmodified	1420.6874	0.68744622	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.14	6.62	4	9	4				4	8	8	8	12	6	11	63.718	57.91	2;3	6.0301E-72	29351	160513_QHF_FH_JSI10Kac_5	233.45	185.17			1.0465	1.035	56.1	35	9	Median	1.2271	1.0456	21.144	7	1	Median	0.74158	0.85328	52.669	12	4	Median	1.0031	0.9664	16.054	6	0	Median	1.0796	1.1323	78.224	10	4	Median	36391000000	17612000000	18780000000	5864000000	2484300000	3379700000	8505100000	4275600000	4229500000	11804000000	6091700000	5712500000	10218000000	4760200000	5457900000	46801	870	44062	282923;282924;282925;282926;282927;282928;282929;282930;282931;282932;282933;282934;282935;282936;282937;282938;282939;282940;282941;282942;282943;282944;282945;282946;282947;282948;282949;282950;282951;282952;282953;282954;282955;282956;282957;282958;282959	379446;379447;379448;379449;379450;379451;379452;379453;379454;379455;379456;379457;379458;379459;379460;379461;379462;379463;379464;379465;379466;379467;379468;379469;379470;379471;379472;379473;379474;379475;379476;379477;379478;379479;379480;379481;379482;379483;379484;379485;379486;379487;379488;379489;379490;379491;379492;379493;379494;379495;379496;379497;379498;379499;379500;379501;379502;379503;379504;379505;379506;379507;379508;379509;379510;379511;379512;379513;379514;379515;379516;379517;379518;379519;379520;379521;379522;379523;379524;379525;379526;379527;379528;379529;379530;379531;379532	379509			86	
SLYYYIQQDTKGDYQK	2	Unmodified	2011.9527	0.95272204	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			3						3	3	2	1		61.427	57.413	3	3.5951E-05	47145	160511_QHF_FH_JSI9i_3	83.54	75.831			0.95943	1.1419	106.63	5	4	Median	0.26591	0.22458	66.16	2	1	Median	1.1113	1.3133	19.78	2	2	Median	1.734	1.6167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	188030000	104940000	83092000	93873000	74252000	19622000	44717000	18431000	26286000	49437000	12252000	37185000	0	0	0	46802	870	44063	282960;282961;282962;282963;282964;282965	379533;379534;379535;379536;379537;379538;379539;379540	379537			8	
SMAAAAASLGGPR	0	Unmodified	1158.5815	0.58154136	5188	Q9P0T7	TMEM9	Transmembrane protein 9	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				37.429	36.385	2	0.00010642	31628	160511_QHF_FH_JSI9i_2	91.937	86.848			0.99071	0.88909	NaN	1	0	Median	0.99071	0.88909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48042000	21888000	26153000	48042000	21888000	26153000	0	0	0	0	0	0	0	0	0	46803	5188	44064	282966	379541	379541			1	
SMAASGNLGHTPFVDEL	0	Oxidation (M)	1760.8039	0.80394931	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.65	69.353	2	0.0010943	59731	160511_QHF_FH_JSI12i_2	57.434	47.43			0.94825	1.0403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94825	1.0403	NaN	1	0	Median	21689000	13427000	8261400	0	0	0	0	0	0	0	0	0	21689000	13427000	8261400	46804	1216	44065	282967;282968;282969	379542;379543;379544	379542		848	3	
SMAASGNLGHTPFVDEL	0	Unmodified	1744.809	0.80903469	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	1	3	77.652	76.695	2	2.1425E-98	68272	160511_QHF_FH_JSI10i_2	265.41	247.28			1.103	1.2243	12.572	8	2	Median	1.5986	1.3571	6.104	2	0	Median	1.0278	1.2243	1.4206	2	0	Median	1.1713	1.1842	NaN	1	0	Median	0.9551	1.0905	21.195	3	2	Plateau	1479300000	721810000	757470000	278430000	104680000	173750000	259850000	127110000	132740000	307000000	165350000	141640000	634010000	324670000	309340000	46805	1216	44065	282970;282971;282972;282973;282974;282975;282976;282977	379545;379546;379547;379548;379549;379550;379551;379552;379553;379554;379555	379555			11	
SMAEDTINAAVK	1	Unmodified	1248.602	0.60200203	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	42.604	41.746	2	6.4799E-09	37689	160511_QHF_FH_JSI11i_1	141.1	125.21			1.0035	0.94225	27.204	7	4	Median	1.1127	0.93025	8.2908	2	1	Median	0.6567	0.78435	9.1964	2	1	Median	0.96862	0.94225	NaN	1	0	Median	1.2855	1.343	35.243	2	2	Median	907100000	468070000	439040000	156860000	76149000	80716000	230960000	126790000	104170000	266180000	135720000	130460000	253100000	129410000	123690000	46806	1558	44066	282978;282979;282980;282981;282982;282983;282984;282985;282986	379556;379557;379558;379559;379560;379561;379562;379563;379564;379565	379556			10	
SMAGNIIPAIATTNAVIAGLIVLEGLK	1	Unmodified	2649.5139	0.5139093	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.77	6.74		3	3						7	3	4	3	3	104.64	100.08	2;3;4	5.1896E-134	54992	160513_QHF_FH_JSI9Kac_6	246.31	229.43			0.86336	0.93649	9.1796	12	5	Median	1.0475	0.9109	10.063	3	1	Median	0.81714	0.98767	5.8729	4	1	Median	1.0135	0.94947	7.5886	3	1	Median	0.78771	0.8343	7.1841	2	2	Median	1473600000	780950000	692680000	362370000	155690000	206680000	800430000	459060000	341380000	216500000	115790000	100700000	94334000	50406000	43928000	46807	5254	44067	282987;282988;282989;282990;282991;282992;282993;282994;282995;282996;282997;282998;282999	379566;379567;379568;379569;379570;379571;379572;379573;379574;379575;379576;379577;379578;379579;379580;379581;379582;379583;379584;379585	379575			20	
SMAGNIIPAIATTNAVIAGLIVLEGLK	1	Oxidation (M)	2665.5088	0.50882392	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.27		2	1						7	1	2	4	3	103.78	98.323	3	2.963E-40	54401	160513_QHF_FH_JSI9Kac_6	151.31	144.59			0.83744	0.92445	19.338	9	5	Median	1.1473	0.98046	NaN	1	0	Median	0.8329	0.97628	7.7141	2	2	Median	0.83744	0.81872	33.899	3	2	Median	0.7906	0.8318	9.3561	3	1	Median	430430000	226380000	204050000	99816000	46034000	53782000	169770000	92853000	76919000	69290000	34910000	34380000	91556000	52585000	38971000	46808	5254	44067	283000;283001;283002;283003;283004;283005;283006;283007;283008;283009	379586;379587;379588;379589;379590;379591;379592;379593;379594;379595;379596;379597	379591		2619	12	
SMANPPAAVK	1	Unmodified	984.50625	0.50625115	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	4.03	6	2					1			3	1	4	1	21.188	20.605	2	0.00059322	18096	160511_QHF_FH_JSI12i_1	82.287	62.65			0.96659	0.98001	26.982	8	2	Median	1.7925	1.5216	37.336	3	1	Plateau	0.7987	0.93449	NaN	1	0	Median	0.94047	0.93245	30.192	3	1	Median	0.99344	1.0278	NaN	1	0	Median	631230000	302250000	328980000	164370000	61682000	102690000	83687000	46500000	37187000	256540000	128140000	128400000	126640000	65934000	60704000	46809	2517	44068	283010;283011;283012;283013;283014;283015;283016;283017;283018	379598;379599;379600;379601;379602;379603;379604;379605;379606;379607	379601			9	
SMASGGGVPTDEEQATGLER	0	Unmodified	1990.8902	0.89019814	974	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.129	42.473	2	4.423E-33	38526	160511_QHF_FH_JSI12i_1	192.51	177.31			1.0876	1.1381	16.985	4	1	Median	1.9119	1.5566	NaN	1	1	Median	1.0015	1.1781	NaN	1	0	Median	1.1276	1.0994	NaN	1	0	Median	1.0491	1.0785	NaN	1	0	Median	118380000	55240000	63136000	16420000	5249500	11170000	28590000	13888000	14701000	42324000	20807000	21517000	31043000	15296000	15748000	46810	974	44069	283019;283020;283021;283022	379608;379609;379610;379611;379612;379613;379614	379609			7	
SMATVDEEEQAVLDR	0	Unmodified	1691.7672	0.76722946	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		60.034	59.393	2	1.2154E-07	53659	160511_QHF_FH_JSI10i_1	134.98	110.12			0.42269	0.43018	31.697	3	3	Plateau	0.40113	0.3315	NaN	1	1	Median	0.47963	0.55824	NaN	1	1	Median	0.61288	0.58801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134010000	92189000	41822000	44049000	32106000	11943000	41436000	31489000	9947500	48525000	28594000	19931000	0	0	0	46811	3404	44070	283023;283024;283025	379615;379616;379617	379616			3	
SMAVAAR	0	Unmodified	704.36394	0.36394401	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.71	3	4	2					3		1	3	4	4	10.538	7.9929	2	0.00025305	7461	160511_QHF_FH_JSI10i_2	137.44	45.161			1.1509	1.2616	54.263	12	3	Median	1.606	1.3787	NaN	1	0	Median	1.0099	1.2421	4.9045	3	0	Median	1.4369	1.425	56.984	4	2	Median	1.1713	1.2397	81.817	4	1	Median	6360500000	1867600000	4492900000	463280000	152030000	311250000	776140000	429660000	346480000	2130200000	690750000	1439500000	2990800000	595140000	2395700000	46812	1436	44071	283026;283027;283028;283029;283030;283031;283032;283033;283034;283035;283036;283037	379618;379619;379620;379621;379622;379623;379624;379625;379626;379627;379628;379629	379628			12	
SMCGYQTFFAGK	1	Unmodified	1395.5951	0.59514251	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	62.459	61.867	2	4.327E-16	53077	160511_QHF_FH_JSI12i_3	163.66	153.88			1.2548	1.1984	27.283	5	1	Median	NaN	NaN	NaN	0	0	Median	0.80879	0.99354	NaN	1	0	Median	1.1413	1.1105	10.778	2	1	Median	1.6598	1.728	4.7025	2	0	Median	277270000	120450000	156820000	0	0	0	45817000	26960000	18857000	105220000	47353000	57870000	126230000	46134000	80092000	46813	1081	44072	283038;283039;283040;283041;283042;283043	379630;379631;379632;379633;379634;379635;379636	379635			7	
SMDAPSRR	0	Unmodified	918.43415	0.43414884	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			3							1	1	1		5.8462	5.5064	3	0.018786	3520	160511_QHF_FH_JSI9i_3	27.303	16.43			0.78207	0.87778	22.066	3	0	Median	1.2978	1.0782	NaN	1	0	Median	0.78207	0.87778	NaN	1	0	Median	0.75364	0.6937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97247000	45116000	52131000	45924000	18364000	27560000	22806000	11861000	10945000	28517000	14891000	13626000	0	0	0	46814	238	44073	283044;283045;283046	379637	379637			1	
SMDEFTASTPADLGEAGR	0	Unmodified	1853.8102	0.8101569	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	62.54	61.996	2	2.0188E-23	54882	160511_QHF_FH_JSI9i_1	134.68	119.71			1.0035	1.0148	27.874	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85505	0.83326	NaN	1	0	Median	1.1778	1.2359	NaN	1	0	Median	91917000	49583000	42334000	0	0	0	0	0	0	53014000	31386000	21629000	38902000	18197000	20705000	46815	3282	44074	283047;283048;283049	379638;379639;379640;379641	379641			4	
SMDELNHDFQALALEGR	0	Unmodified	1944.9	0.89997496	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.747	80.97	3	3.1136E-07	71114	160511_QHF_FH_JSI11i_2	123.14	112.67			1.1855	1.3069	21.566	4	0	Median	2.0016	1.6975	NaN	1	0	Median	1.1667	1.4322	NaN	1	0	Median	1.2047	1.1927	NaN	1	0	Median	0.9617	1.0346	NaN	1	0	Median	167010000	72964000	94047000	21869000	7344000	14525000	48854000	21474000	27379000	56196000	22779000	33418000	40092000	21367000	18725000	46816	2555	44075	283050;283051;283052;283053	379642;379643	379643			1	
SMDHFDDIGPSVVMASPGMMQSGLSR	0	Unmodified	2751.2125	0.21247703	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		90.142	90.142	3	0.0016559	80370	160511_QHF_FH_JSI11i_3	35.246	27.8			1.6595	1.5046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6595	1.5046	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39603000	12736000	26867000	0	0	0	0	0	0	39603000	12736000	26867000	0	0	0	46817	5366	44076	283054	379644	379644			1	
SMDIDDFIR	0	Unmodified	1110.5016	0.5015597	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.454	74.193	2	0.026228	64097	160511_QHF_FH_JSI12i_2	49.715	33.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46818	5446	44077	283055	379645	379645			1	
SMDSYLNQSYGMDNHSGGGGGSR	0	Unmodified	2375.9495	0.94952071	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	46.055	45.362	3	5.9758E-20	39969	160511_QHF_FH_JSI11i_3	149.85	149.39			1.0638	1.0977	33.923	6	2	Median	1.0175	0.87236	NaN	1	0	Median	0.87027	1.0601	NaN	1	0	Median	1.6303	1.5849	32.525	2	1	Median	0.87938	0.92216	29.58	2	1	Median	311700000	158010000	153690000	38861000	17227000	21634000	54844000	36497000	18347000	117880000	46063000	71818000	100120000	58222000	41895000	46819	2880	44078	283056;283057;283058;283059;283060;283061;283062	379646;379647;379648;379649;379650;379651;379652;379653;379654;379655;379656;379657	379646			12	
SMEAEMIQLQEELAAAER	0	Unmodified	2047.9554	0.95544093	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								3	3	4	3	101.27	101.17	2;3	4.8159E-210	86974	160511_QHF_FH_JSI12i_2	336.06	281.27			1.0609	1.1702	16.037	13	3	Median	1.028	0.85814	21.978	3	3	Median	0.96759	1.1804	10.705	3	0	Median	1.2268	1.2322	8.334	4	0	Median	1.0614	1.0803	8.6518	3	0	Median	4790100000	2343500000	2446600000	841420000	411890000	429530000	1119600000	557740000	561880000	1776300000	852840000	923490000	1052700000	520990000	531730000	46820	1436	44079	283063;283064;283065;283066;283067;283068;283069;283070;283071;283072;283073;283074;283075	379658;379659;379660;379661;379662;379663;379664;379665;379666;379667;379668;379669;379670	379658			13	
SMEAHNILSK	1	Unmodified	1128.5597	0.55974328	4887	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		24.973	24.437	2;3	0.0079407	20303	160511_QHF_FH_JSI11i_2	60.518	44.856			1.3541	1.3448	52.256	3	1	Median	NaN	NaN	NaN	0	0	Median	0.55706	0.67769	NaN	1	0	Median	1.593	1.5945	24.093	2	1	Median	NaN	NaN	NaN	0	0	Median	153660000	72261000	81397000	0	0	0	43504000	25671000	17833000	110150000	46590000	63564000	0	0	0	46821	4887	44080	283076;283077;283078	379671;379672;379673	379672			2	
SMEDFVTWVDSSK	1	Unmodified	1529.6708	0.67080988	5020	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.964	90.27	2	0.00014891	79423	160511_QHF_FH_JSI11i_2	107.85	93.167			1.0898	1.1632	1.21	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1447	1.1533	NaN	1	1	Median	1.0375	1.1732	NaN	1	1	Median	33651000	13831000	19819000	0	0	0	0	0	0	24164000	9574500	14589000	9487000	4256900	5230100	46822	5020	44081	283079;283080	379674;379675	379675			2	
SMEDPFFVVK	1	Acetyl (Protein N-term)	1239.5846	0.58456105	370	O43752	STX6	Syntaxin-6	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	96.976	96.513	2	0.0001885	87342	160511_QHF_FH_JSI12i_1	81.548	65.666			0.31216	0.26326	NaN	1	1	Median	0.31216	0.26326	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7026200	4096300	2929800	7026200	4096300	2929800	0	0	0	0	0	0	0	0	0	46823	370	44082	283081;283082;283083	379676;379677;379678	379677			3	
SMEDSVDVSAPK	1	Unmodified	1263.5653	0.56528217	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	34.876	34.289	2	0.00053746	30976	160511_QHF_FH_JSI12i_1	84.507	61.767			0.91975	0.96226	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91975	0.96226	NaN	1	1	Median	35585000	22586000	12999000	0	0	0	0	0	0	0	0	0	35585000	22586000	12999000	46824	3405	44083	283084;283085	379679;379680	379679			2	
SMEEDPQTSR	0	Unmodified	1178.4874	0.4873662	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	11.804	8.4716	2	1.63E-14	7884	160511_QHF_FH_JSI12i_1	166.09	158.61			1.0438	1.0603	5.003	7	0	Median	1.2638	1.0381	NaN	1	0	Median	0.856	1.006	7.4307	2	0	Median	1.1097	1.0763	0.35644	2	0	Median	0.9925	1.0591	6.6727	2	0	Median	3269000000	1549400000	1719600000	814980000	303880000	511100000	834930000	448520000	386410000	686940000	324860000	362080000	932150000	472150000	460000000	46825	2094	44084	283086;283087;283088;283089;283090;283091;283092	379681;379682;379683;379684;379685;379686;379687;379688;379689;379690;379691;379692;379693	379684			13	
SMEEDPQTSR	0	Oxidation (M)	1194.4823	0.48228082	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	3.4	4.8	4					1				1		1	3	9.5202	7.3019	2	0.00067876	7897	160511_QHF_FH_JSI12i_1	95.523	91.107			0.97813	0.97552	30.169	4	3	Median	1.9078	1.5836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0959	1.0688	NaN	1	0	Median	0.82639	0.84184	7.927	2	2	Median	280870000	140350000	140520000	98472000	36864000	61609000	0	0	0	9265900	4417700	4848200	173140000	99069000	74067000	46826	2094	44084	283093;283094;283095;283096;283097	379694;379695;379696;379697;379698	379695		1776	5	
SMEFAPSEGAGTQDAAK	1	Unmodified	1695.741	0.74101471	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		39.219	38.877	2	1.9895E-05	34830	160511_QHF_FH_JSI10i_1	94.122	77.096			1.0644	1.1307	29.641	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.3943	NaN	1	0	Median	0.93999	0.91688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79689000	35303000	44387000	0	0	0	38851000	14780000	24071000	40839000	20523000	20315000	0	0	0	46827	1489;2481	44085	283098;283099;283100	379699;379700;379701	379700			3	
SMEMLVEHQAHDILT	0	Unmodified	1752.8175	0.81749089	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.82		7							2	1	2	3	3	73.147	70.369	2;3	6.2253E-05	61565	160511_QHF_FH_JSI12i_2	123.64	101.59			0.994	1.0178	17.137	9	1	Median	1.5806	1.3434	NaN	1	0	Median	1.0843	1.3393	16.971	2	1	Median	0.994	0.99995	6.5893	3	0	Median	0.88877	0.98131	11.225	3	0	Plateau	820620000	376920000	443700000	158980000	44577000	114410000	152230000	74556000	77673000	216950000	97364000	119580000	292460000	160420000	132030000	46828	5441	44086	283101;283102;283103;283104;283105;283106;283107;283108;283109	379702;379703;379704;379705;379706;379707;379708;379709	379703			7	
SMENIMEMNK	1	Unmodified	1225.5141	0.514115	2330	Q12959	DLG1	Disks large homolog 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.391	48.865	2	0.00028047	42149	160511_QHF_FH_JSI11i_2	89.08	84.432			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46829	2330	44087	283110	379710	379710			1	
SMENYYQESGR	0	Unmodified	1362.551	0.55102909	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	4	4					4			2	3	4	3	28.002	24.455	2	3.2248E-30	21066	160511_QHF_FH_JSI9i_2	195.36	184.83			1.0472	1.0223	23.331	12	1	Median	1.2686	1.0683	14.837	2	0	Median	0.73926	0.87698	12.281	3	0	Plateau	1.0472	1.0316	36.184	4	1	Median	0.94313	1.0093	17.519	3	0	Plateau	1052100000	492570000	559520000	229230000	87364000	141860000	234270000	123010000	111260000	331670000	159280000	172390000	256920000	122920000	134000000	46830	1579	44088	283111;283112;283113;283114;283115;283116;283117;283118;283119;283120;283121;283122	379711;379712;379713;379714;379715;379716;379717;379718;379719;379720;379721;379722;379723;379724;379725;379726;379727;379728;379729;379730	379725			20	
SMENYYQESGR	0	Oxidation (M)	1378.5459	0.54594371	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								3	2	2	2	25.239	24.576	2	0.00018742	20460	160511_QHF_FH_JSI12i_2	84.658	81.304			1.2068	1.2477	17.9	7	0	Median	1.0806	0.91576	3.0756	2	0	Median	1.013	1.178	NaN	1	0	Median	1.3807	1.3372	0.73732	2	0	Median	1.2302	1.3202	7.9927	2	0	Median	214500000	97091000	117410000	46434000	19741000	26693000	39462000	19102000	20360000	80783000	37475000	43308000	47820000	20773000	27047000	46831	1579	44088	283123;283124;283125;283126;283127;283128;283129;283130;283131	379731;379732;379733;379734;379735;379736;379737	379733		1241	7	
SMEQLTSSLNEGENTHMIHQK	1	Unmodified	2413.1002	0.10020769	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.5	0.5		2	2							1	1	1	1	51.605	51.05	4	1.7952E-22	45043	160511_QHF_FH_JSI11i_3	156.67	142.26			1.0397	1.074	19.564	4	0	Median	1.3873	1.1802	NaN	1	0	Median	1.1368	1.3893	NaN	1	0	Median	0.95086	0.89738	NaN	1	0	Median	0.9354	0.97734	NaN	1	0	Median	243270000	123450000	119820000	34408000	8666900	25741000	44761000	17088000	27673000	106150000	63850000	42295000	57958000	33849000	24108000	46832	3252	44089	283132;283133;283134;283135	379738;379739	379738			2	
SMEVSTQLAR	0	Unmodified	1120.5547	0.55465791	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		33.718	33.308	2	0.052128	28315	160511_QHF_FH_JSI11i_2	48.283	32.08			1.1067	1.1091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1067	1.1091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74151000	37104000	37046000	0	0	0	0	0	0	74151000	37104000	37046000	0	0	0	46833	5479	44090	283136	379740	379740			0	
SMFAGVPTMR	0	Oxidation (M)	1111.5154	0.51543563	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		1	4						2	2	2	2	1	43.562	42.718	2	0.00019829	34870	160511_QHF_FH_JSI9i_3	83.998	65.216			1.0274	1.1083	26.801	4	0	Median	1.8994	1.5482	NaN	1	0	Median	1.0453	1.268	NaN	1	0	Median	1.0098	0.96863	NaN	1	0	Median	0.8322	0.85263	NaN	1	0	Median	316780000	168550000	148220000	56397000	22962000	33434000	86548000	43664000	42883000	61793000	34551000	27243000	112040000	67374000	44664000	46834	271	44091	283137;283138;283139;283140;283141;283142;283143	379741;379742;379743;379744;379745;379746;379747;379748;379749	379745		109	9	
SMFAGVPTMR	0	Unmodified	1095.5205	0.52052101	271	O15260	SURF4	Surfeit locus protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.74		4	4					2	1	3	3	3	2	60.246	57.514	2	1.562E-09	48219	160511_QHF_FH_JSI10i_3	133.57	72.612			0.99996	0.9992	26.958	10	1	Median	1.4557	1.2101	23.249	2	0	Median	0.86207	1.0222	28.847	3	0	Plateau	0.99984	0.94562	35.327	3	1	Plateau	0.79509	0.85049	5.9554	2	0	Median	4377800000	2179300000	2198500000	886330000	357870000	528450000	1147100000	616400000	530670000	1273900000	618910000	654950000	1070600000	586100000	484480000	46835	271	44091	283144;283145;283146;283147;283148;283149;283150;283151;283152;283153;283154	379750;379751;379752;379753;379754;379755;379756;379757;379758;379759;379760;379761;379762;379763;379764;379765;379766;379767;379768;379769	379755			20	
SMFFFLAQTEQGDIFK	1	Unmodified	1907.9128	0.91277148	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	95.94	88.071	2;3	1.1604E-231	49288	160513_QHF_FH_JSI11Kac_6	332.42	301.87			0.87496	0.89063	13.881	5	0	Median	0.87496	0.74003	NaN	1	0	Median	0.74883	0.87031	3.2652	2	0	Median	1.0128	0.95136	NaN	1	0	Median	1.0037	1.0779	NaN	1	0	Median	785600000	431280000	354330000	142290000	76691000	65597000	363330000	200960000	162360000	139860000	83242000	56621000	140130000	70383000	69743000	46836	2665	44092	283155;283156;283157;283158;283159;283160	379770;379771;379772;379773;379774;379775;379776;379777;379778;379779	379770			10	
SMFFFLAQTEQGDIFK	1	Oxidation (M)	1923.9077	0.9076861	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	1	0		By MS/MS		By MS/MS	16	0									2		1		1	90.904	83.322	2	7.8048E-53	44249	160513_QHF_FH_JSI12Kac_6	193.11	175.45			1.0828	1.214	52.372	2	1	Median	NaN	NaN	NaN	0	0	Median	1.49	1.7581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78691	0.83829	NaN	1	0	Median	91625000	45766000	45859000	0	0	0	36801000	16761000	20040000	0	0	0	54824000	29004000	25819000	46837	2665	44092	283161;283162	379780;379781;379782	379781		2091	3	
SMFSDQVLAHPSVK	1	Unmodified	1544.7657	0.76571331	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	53.954	53.357	3	1.2694E-05	45703	160511_QHF_FH_JSI12i_3	103.61	94.076			1.0818	1.047	17.862	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2095	1.4391	NaN	1	0	Median	1.1659	1.0859	NaN	1	0	Median	1.0037	1.0334	NaN	1	0	Median	362800000	172740000	190050000	0	0	0	18963000	8817900	10145000	158310000	73261000	85048000	185520000	90666000	94859000	46838	5229	44093	283163;283164;283165	379783	379783			1	
SMFSKVREMLRMR	1	Oxidation (M)	1685.8528	0.85277096	4770	Q9H7M6	ZSWIM4	Zinc finger SWIM domain-containing protein 4	yes	yes	0	0	1	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	1	2	53.406	43.551	3	0.013653	22303	160513_QHF_FH_JSI10Kac_5	36.284	11.726			0.78559	1.0608	10.367	7	0	Linear	1.4956	1.2697	0.99605	2	0	Median	0.86046	1.0282	4.4062	2	0	Median	1.049	0.9976	NaN	1	0	Median	0.98079	1.0638	2.0297	2	0	Median	419380000	201500000	217880000	86210000	37426000	48784000	158440000	78534000	79907000	51680000	23812000	27868000	123040000	61724000	61320000	46839	4770	44094	283166;283167;283168;283169;283170;283171;283172	379784;379785;379786;379787;379788;379789;379790	379787		2527;2528	6	
SMGFIGHYLDQK	1	Unmodified	1394.6653	0.66527099	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.36		4	9						7	5	6	5	4	65.384	61.425	2;3	1.9396E-39	33529	160513_QHF_FH_JSI10Kac_6	194.17	153.44			0.91666	0.91522	28.599	18	5	Median	1.1029	0.88962	25.726	4	1	Median	0.77396	0.93173	10.231	5	0	Median	0.91465	0.88413	47.787	5	1	Median	0.97031	1.0127	27.231	4	3	Median	5159100000	2584400000	2574700000	1375800000	635700000	740060000	1159700000	625220000	534440000	2215800000	1136500000	1079200000	407950000	186950000	221000000	46840	1798	44095	283173;283174;283175;283176;283177;283178;283179;283180;283181;283182;283183;283184;283185;283186;283187;283188;283189;283190;283191;283192	379791;379792;379793;379794;379795;379796;379797;379798;379799;379800;379801;379802;379803;379804;379805;379806;379807;379808;379809;379810;379811;379812;379813;379814;379815;379816;379817;379818;379819;379820;379821;379822;379823;379824;379825;379826;379827;379828;379829;379830;379831;379832;379833;379834;379835	379835			45	
SMGFIGHYLDQK	1	Oxidation (M)	1410.6602	0.66018561	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.57	6.43			4						3	3	1	1	2	51.167	47.195	2;3	8.5497E-05	38801	160511_QHF_FH_JSI9i_3	97.734	74.994			1.3549	1.2592	27.048	6	4	Median	1.764	1.4156	19.876	3	2	Median	0.9608	1.1246	NaN	1	1	Median	1.103	0.99465	NaN	1	0	Median	0.91458	0.98286	NaN	1	1	Median	115120000	51322000	63801000	57035000	20456000	36578000	19451000	10319000	9132200	33635000	17994000	15640000	5002400	2552600	2449800	46841	1798	44095	283193;283194;283195;283196;283197;283198;283199	379836;379837;379838;379839;379840;379841	379837		1482	6	
SMGGTLDLYSIDEHFQPK	1	Unmodified	2036.9513	0.95134183	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.027	80.138	3	8.623E-17	70371	160511_QHF_FH_JSI11i_2	144.46	136.62			1.0143	1.0703	5.0177	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0976	1.109	NaN	1	0	Median	0.93729	1.033	NaN	1	1	Median	170990000	86734000	84261000	0	0	0	0	0	0	112040000	52470000	59570000	58955000	34264000	24691000	46842	3536	44096	283200;283201	379842;379843	379843			2	
SMGLPTSDEQK	1	Oxidation (M)	1207.5391	0.53906742	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	3	3	2	22.27	19.537	2	0.0056147	12915	160511_QHF_FH_JSI10i_1	55.461	43.74			1.0341	1.1073	43.498	9	1	Median	0.98832	0.82073	NaN	1	0	Median	0.92297	1.0731	51.313	3	0	Median	1.3751	1.3098	64.588	3	0	Median	1.0487	1.117	1.2419	2	1	Median	418390000	218770000	199620000	115170000	61397000	53774000	93883000	45880000	48003000	142220000	75406000	66815000	67114000	36086000	31028000	46843	5497	44097	283202;283203;283204;283205;283206;283207;283208;283209;283210	379844;379845;379846;379847;379848;379849;379850;379851	379849		2681	8	
SMGLPTSDEQK	1	Unmodified	1191.5442	0.5441528	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	28.895	28.304	2	9.2159E-05	25293	160511_QHF_FH_JSI12i_1	99.34	79.011			0.85423	0.83952	66.587	4	4	Median	1.0823	0.8825	NaN	1	1	Median	0.67423	0.79863	NaN	1	1	Median	2.7756	2.7047	NaN	1	1	Median	0.55512	0.59051	NaN	1	1	Median	2712100000	1501600000	1210500000	681410000	322060000	359350000	850390000	540900000	309490000	260460000	67403000	193060000	919860000	571280000	348580000	46844	5497	44097	283211;283212;283213;283214;283215	379852;379853;379854;379855;379856	379853			5	
SMGLPTSDEQKK	2	Unmodified	1319.6391	0.63911582	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	22.14	20.964	3	0.0085111	17368	160511_QHF_FH_JSI12i_2	31.526	24.156			2.0711	2.242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0711	2.242	NaN	1	0	Median	32605000	11555000	21049000	0	0	0	0	0	0	0	0	0	32605000	11555000	21049000	46845	5497	44098	283216	379857	379857			1	
SMGSQEDDSGNKPSSYS	1	Unmodified	1774.6952	0.69518673	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.493	15.035	2	2.8229E-40	12519	160511_QHF_FH_JSI10i_1	210.14	199.77			0.88754	0.83378	26.137	4	0	Median	1.0973	0.89956	NaN	1	0	Median	0.66398	0.7728	NaN	1	0	Median	0.71788	0.69594	NaN	1	0	Median	1.2246	1.2667	NaN	1	0	Median	473750000	222540000	251210000	100810000	49955000	50860000	137030000	68496000	68535000	109240000	58609000	50628000	126670000	45485000	81185000	46846	5448	44099	283217;283218;283219;283220	379858;379859;379860;379861;379862;379863;379864;379865	379862			8	
SMGTGDTPGLEVPSSPLRK	1	Unmodified	1927.9673	0.96732625	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			58.569	57.033	3	0.00080103	47701	160511_QHF_FH_JSI10i_3	52.298	34.16			0.70624	0.83129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70624	0.83129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16276000	10069000	6206800	0	0	0	16276000	10069000	6206800	0	0	0	0	0	0	46847	3356	44100	283221	379866	379866			1	
SMGYDDLDYGMMSDYGTAR	0	Unmodified	2146.8282	0.82819151	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			75.693	75.16	2	1.9419E-32	66835	160511_QHF_FH_JSI9i_1	148.72	146.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46848	442	44101	283222;283223	379867;379868	379868			2	
SMIAAAGYQHIR	0	Unmodified	1316.6659	0.66593969	4467	Q9BVC4	MLST8	Target of rapamycin complex subunit LST8	yes	yes	0	0	0	0		By MS/MS			16	0									3		3			43.051	34.433	2;3	7.5625E-21	19139	160513_QHF_FH_JSI10Kac_6	134.13	104.19			0.81996	0.9597	25.56	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81996	0.9597	25.56	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17092000	8252600	8839600	0	0	0	17092000	8252600	8839600	0	0	0	0	0	0	46849	4467	44102	283224;283225;283226	379869;379870;379871;379872	379870			4	
SMIEISR	0	Unmodified	834.42694	0.4269382	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.62	3	4	3				1	4	3	4	5	4	5	36.336	31.44	2	8.338E-05	17846	160513_QHF_FH_JSI11Kac_5	121.52	52.423			1.0864	1.0818	20.094	17	0	Median	1.1774	1.0301	8.5024	3	0	Median	0.90825	1.0683	21.239	5	0	Median	1.1681	1.2005	6.1433	4	0	Linear	1.0055	1.1156	32.578	5	0	Median	4116100000	2055200000	2060900000	724830000	332700000	392120000	921890000	453090000	468800000	1348700000	698460000	650280000	1120600000	570940000	549670000	46850	1655	44103	283227;283228;283229;283230;283231;283232;283233;283234;283235;283236;283237;283238;283239;283240;283241;283242;283243;283244	379873;379874;379875;379876;379877;379878;379879;379880;379881;379882;379883;379884;379885;379886;379887;379888;379889;379890;379891;379892;379893;379894	379888			22	
SMIEQLIK	1	Unmodified	960.5314	0.53140327	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	60.388	60.01	2	0.002221	51788	160511_QHF_FH_JSI12i_3	90.657	57.106			1.1718	1.183	49.286	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.35796	0.4454	NaN	1	1	Median	0.87795	0.81402	NaN	1	1	Median	1.1718	1.183	NaN	1	1	Median	489060000	322340000	166730000	0	0	0	213530000	176070000	37461000	99413000	49680000	49733000	176120000	96586000	79532000	46851	2997	44104	283245;283246;283247	379895;379896;379897	379897			3	
SMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSK	1	Unmodified	3921.8084	0.80840613	4962	Q9NRR3	CDC42SE2	CDC42 small effector protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							1	3			92.35	91.667	4	0.00061028	76460	160511_QHF_FH_JSI10i_3	35.472	31.588			0.97483	0.65427	27.459	3	2	Plateau	1.1183	0.97412	NaN	1	1	Median	0.74504	0.85139	37.244	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81920000	52670000	29250000	15140000	4259000	10881000	66780000	48411000	18370000	0	0	0	0	0	0	46852	4962	44105	283248;283249;283250;283251	379898;379899;379900;379901;379902;379903	379900			6	
SMIGMSTK	1	Unmodified	853.40376	0.40375991	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	25.143	24.395	2	0.0032124	20309	160511_QHF_FH_JSI11i_2	80.438	30.319			0.92482	1.0084	37.431	4	1	Median	1.7969	1.4579	NaN	1	0	Median	1.03	1.1943	NaN	1	0	Median	0.59749	0.62408	NaN	1	1	Median	0.83035	0.85139	NaN	1	0	Median	383540000	163600000	219940000	44679000	14480000	30199000	53064000	20899000	32164000	77585000	46286000	31299000	208210000	81936000	126270000	46853	4153	44106	283252;283253;283254;283255;283256	379904;379905;379906	379905			3	
SMILSASVIR	0	Acetyl (Protein N-term);Oxidation (M)	1133.6114	0.6114445	4127	Q96IW7	SEC22A	Vesicle-trafficking protein SEC22a	yes	yes	0	1	1	0		By MS/MS	By MS/MS		12.5	0.5					1	1					1	1		79.635	71.329	2	0.0035047	29568	160513_QHF_FH_JSI10Kac_2	55.549	45.319			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46854	4127	44107	283257;283258	379907;379908	379908		2395	2	
SMILSASVIR	0	Acetyl (Protein N-term)	1117.6165	0.61652988	4127	Q96IW7	SEC22A	Vesicle-trafficking protein SEC22a	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			89.389	89.306	2	0.0014281	81286	160511_QHF_FH_JSI10i_1	64.04	47.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46855	4127	44107	283259	379909	379909			1	
SMIMFGSQENK	1	Unmodified	1270.5686	0.56859341	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.759	47.639	2	9.9467E-05	40767	160511_QHF_FH_JSI12i_3	87.298	66.969			1.2065	1.1961	29.853	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0294	0.96845	NaN	1	1	Median	1.414	1.4772	NaN	1	0	Median	75774000	37959000	37815000	0	0	0	0	0	0	37725000	21298000	16428000	38049000	16662000	21387000	46856	641	44108	283260;283261	379910;379911	379911			2	
SMKGFYFAK	2	Acetyl (K)	1119.5423	0.54230231	1685;191	P49792;O14715;Q99666	RANBP2;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	70.846	61.581	2	0.00066068	33345	160513_QHF_FH_JSI11Kac_6	96.331	77.891			0.85593	0.92677	31.699	3	0	Median	1.376	1.192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65062	0.63501	NaN	1	0	Median	0.85593	0.92677	NaN	1	0	Median	34142000	18594000	15548000	10587000	5209800	5376900	0	0	0	14931000	8865800	6065200	8624200	4518500	4105600	46857	1685;191	44109	283262;283263;283264	379912;379913;379914	379912	105		3	
SMLAALIAAQATALNR	0	Unmodified	1613.8923	0.89231081	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			91.267	85.546	2;3	2.9168E-16	48820	160513_QHF_FH_JSI10Kac_6	169.82	113.04			0.98917	1.1825	4.2462	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98917	1.1825	4.2462	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	310790000	140910000	169880000	0	0	0	310790000	140910000	169880000	0	0	0	0	0	0	46858	3459	44110	283265;283266	379915;379916;379917;379918	379916			4	
SMLALLLGR	0	Unmodified	972.57902	0.57902216	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			87.246	80.069	2	5.4905E-11	45640	160513_QHF_FH_JSI10Kac_6	152.47	95.293			1.1878	1.2042	3.8288	2	1	Median	1.3628	1.172	NaN	1	1	Median	1.0352	1.2372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107870000	52401000	55469000	33951000	13792000	20159000	73919000	38609000	35310000	0	0	0	0	0	0	46859	4418	44111	283267;283268	379919;379920;379921	379921			3	
SMLDIVEHDLLK	1	Unmodified	1411.7381	0.73810158	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	100.03	99.88	3	0.001966	86016	160511_QHF_FH_JSI12i_2	51.875	37.313			1.1708	1.1443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1708	1.1443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5158400	1948200	3210300	0	0	0	0	0	0	5158400	1948200	3210300	0	0	0	46860	232	44112	283269;283270;283271	379922;379923;379924	379922			3	
SMLEVNYPMENGIVR	0	Unmodified	1750.8382	0.83822633	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	3	3	2	77.235	76.596	2;3	1.7777E-11	68002	160511_QHF_FH_JSI10i_2	106.01	89.754			0.87376	0.89659	11.865	9	8	Median	1.0774	0.93712	22.92	2	2	Median	0.76701	0.92645	16.743	2	1	Median	0.87376	0.89659	7.4606	3	3	Median	0.86038	0.93582	12.194	2	2	Median	738380000	381790000	356590000	151310000	76141000	75173000	69289000	39811000	29478000	352090000	175900000	176190000	165680000	89940000	75744000	46861	1940	44113	283272;283273;283274;283275;283276;283277;283278;283279;283280;283281	379925;379926;379927;379928;379929;379930;379931;379932;379933;379934;379935	379935			11	
SMLEVNYPMENGIVR	0	Oxidation (M)	1766.8331	0.83314095	1940	P61160	ACTR2	Actin-related protein 2	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	67.188	65.888	2	0.0052735	56717	160511_QHF_FH_JSI12i_2	58.676	44.771			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46862	1940	44113	283282	379936	379936		1609	1	
SMLLLAPK	1	Unmodified	871.52011	0.5201103	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.997	57.064	2	0.0013228	50094	160511_QHF_FH_JSI9i_2	91.041	64.439			0.82242	0.91075	12.255	4	0	Median	1.2012	1.0313	NaN	1	0	Median	0.72504	0.89798	NaN	1	0	Median	0.93287	0.9237	NaN	1	0	Median	0.68292	0.76634	NaN	1	0	Median	286260000	139100000	147160000	59420000	26565000	32855000	61273000	28824000	32448000	101230000	47622000	53612000	64332000	36086000	28247000	46863	4157	44114	283283;283284;283285;283286	379937;379938;379939;379940;379941;379942;379943	379938			7	
SMLLSAIGK	1	Unmodified	918.52084	0.52083858	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	59.365	58.77	2	0.00049206	50439	160511_QHF_FH_JSI12i_3	89.698	16.45			1.1043	0.91381	29.018	3	1	Plateau	1.1043	0.91381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0391	1.001	NaN	1	0	Median	1.5253	1.5711	NaN	1	1	Median	727790000	369350000	358440000	307200000	172260000	134940000	0	0	0	238800000	124060000	114740000	181780000	73031000	108750000	46864	5279	44115	283287;283288;283289	379944;379945;379946	379946			3	
SMLNFLK	1	Unmodified	851.45751	0.45751004	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							4	2	2	2	65.34	64.479	2	0.0015363	54078	160511_QHF_FH_JSI10i_3	119.57	54.789			1.0222	1.0696	12.583	8	2	Median	1.4121	1.1783	24.339	2	2	Median	0.94772	1.1209	9.7366	2	0	Median	1.107	1.0664	6.4765	2	0	Median	0.9612	1.0115	11.015	2	0	Median	1965900000	931200000	1034700000	422660000	149330000	273330000	370980000	179750000	191220000	444980000	220460000	224520000	727260000	381650000	345600000	46865	3290	44116	283290;283291;283292;283293;283294;283295;283296;283297;283298;283299	379947;379948;379949;379950;379951;379952;379953;379954;379955;379956;379957;379958;379959;379960;379961	379951			15	
SMLNFLKK	2	Acetyl (K)	1021.563	0.56303775	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.142	67.82	2	0.0012278	37045	160513_QHF_FH_JSI11Kac_6	101.43	58.184			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25201000	25201000	0	0	0	0	0	0	0	25201000	25201000	0	0	0	0	46866	3290	44117	283300	379962	379962	2826		1	
SMLQATAEANNLAAAASAK	1	Unmodified	1831.9098	0.90981137	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	3	3	3	65.92	65.332	2;3	7.1804E-138	58193	160511_QHF_FH_JSI11i_3	283.07	267.54			0.87966	0.96051	14.502	9	1	Median	1.1506	0.98758	NaN	1	0	Median	0.82037	0.98036	6.5847	2	0	Median	0.89876	0.89987	19.915	3	0	Median	0.9386	1.0572	20.12	3	1	Plateau	598500000	302680000	295820000	86001000	43915000	42087000	124450000	72498000	51953000	221780000	88560000	133220000	166280000	97710000	68565000	46867	3036	44118	283301;283302;283303;283304;283305;283306;283307;283308;283309;283310	379963;379964;379965;379966;379967;379968;379969;379970;379971;379972;379973;379974;379975;379976;379977;379978	379965			16	
SMLQATAEANNLAAVAGAR	0	Unmodified	1857.9367	0.93669482	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	2		1	71.804	70.83	2	1.9721E-32	62967	160511_QHF_FH_JSI10i_2	148.57	116.07			1.7155	1.5139	43.728	3	3	Plateau	1.7424	1.5139	NaN	1	1	Median	1.5833	1.9369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73414	0.82794	NaN	1	1	Median	73641000	33608000	40032000	30235000	11617000	18618000	32044000	14680000	17364000	0	0	0	11362000	7310800	4051000	46868	3667	44119	283311;283312;283313;283314	379979;379980;379981;379982	379982			4	
SMMGGGLAEIPGLSINFAK	1	Unmodified	1891.9536	0.95359044	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.8	0.4		1	4							1		3	1	101.42	101.35	2	5.3275E-42	88030	160511_QHF_FH_JSI12i_3	240.43	201.8			0.87461	0.8768	21.864	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8608	0.84331	5.5077	2	0	Median	1.2017	1.2241	NaN	1	0	Median	688650000	356600000	332050000	37085000	19260000	17825000	0	0	0	412060000	221440000	190620000	239500000	115890000	123610000	46869	1747	44120	283315;283316;283317;283318;283319	379983;379984;379985;379986	379985			4	
SMMGGGLAEIPGLSINFAK	1	Oxidation (M)	1907.9485	0.94850506	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	99.047	99.066	2	5.9442E-08	86280	160511_QHF_FH_JSI12i_3	101.6	87.689			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46870	1747	44120	283320;283321	379987;379988	379988		1433	2	
SMMNLQTK	1	Unmodified	951.45177	0.45177274	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	27.702	26.844	2	0.0040696	22564	160511_QHF_FH_JSI12i_2	69.825	44.088			1.244	1.3595	55.94	3	1	Median	NaN	NaN	NaN	0	0	Median	0.96143	1.1915	NaN	1	1	Median	3.2779	3.3311	NaN	1	0	Median	1.244	1.3595	NaN	1	0	Median	481810000	198770000	283040000	0	0	0	111590000	55318000	56276000	181120000	63690000	117430000	189100000	79765000	109330000	46871	998	44121	283322;283323;283324	379989;379990	379989			2	
SMMQDREDQSILCTGESGAGK	1	Oxidation (M)	2314.9828	0.98279467	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		35.859	35.859	3	4.3858E-07	31292	160511_QHF_FH_JSI11i_3	86.727	78.638			0.96136	0.9199	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96136	0.9199	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42117000	29290000	12827000	0	0	0	0	0	0	42117000	29290000	12827000	0	0	0	46872	1436	44122	283325;283326	379991;379992;379993	379991		1107;1108	3	
SMMQDREDQSILCTGESGAGK	1	Unmodified	2298.9879	0.98788005	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							1	3	3	2	44.628	43.905	3	3.7922E-58	38608	160511_QHF_FH_JSI11i_3	223.51	216.29			0.87874	0.90593	26.817	9	2	Median	1.2727	1.0837	NaN	1	0	Median	0.9697	1.1937	37.719	3	1	Median	0.82761	0.78709	18.46	3	1	Plateau	0.92422	0.97973	11.074	2	0	Median	1025600000	542280000	483330000	146290000	71978000	74309000	373310000	193880000	179430000	437340000	240980000	196360000	68676000	35438000	33238000	46873	1436	44122	283327;283328;283329;283330;283331;283332;283333;283334;283335	379994;379995;379996;379997;379998;379999;380000;380001;380002;380003;380004;380005;380006;380007;380008;380009	379995			16	
SMMSAYER	0	Unmodified	973.39974	0.39973717	1141	P18583	SON	Protein SON	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	22.892	22.043	2	0.0024882	18219	160511_QHF_FH_JSI11i_2	73.665	63.25			0.93421	0.94377	12.96	4	0	Median	0.93647	0.82211	NaN	1	0	Median	0.93195	1.121	NaN	1	0	Median	0.96411	0.97426	NaN	1	0	Median	0.82607	0.91423	NaN	1	0	Median	527150000	276860000	250290000	99414000	45726000	53689000	155670000	80536000	75135000	171770000	98914000	72854000	100290000	51684000	48609000	46874	1141	44123	283336;283337;283338;283339;283340	380010;380011;380012;380013;380014;380015;380016;380017	380014			8	
SMMSMGADR	0	Unmodified	984.38271	0.3827069	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			23.348	22.478	2	0.011521	19429	160511_QHF_FH_JSI10i_2	48.794	39.206			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46875	1141	44124	283341	380018	380018			1	
SMMSSYSAADR	0	Unmodified	1204.4853	0.48525771	1141	P18583	SON	Protein SON	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.29		4	2				1	1		1	1	4	2	25.867	23.083	2	3.7313E-06	19299	160511_QHF_FH_JSI11i_2	111.65	99.025			1.1184	1.0743	13.733	8	0	Median	1.2096	1.0803	NaN	1	0	Median	0.79016	0.98135	NaN	1	0	Median	1.1184	0.85233	17.855	4	0	Linear	1.1257	1.1582	11.419	2	0	Median	312180000	153770000	158420000	48218000	18427000	29790000	48292000	32072000	16221000	126900000	62497000	64398000	88779000	40772000	48007000	46876	1141	44125	283342;283343;283344;283345;283346;283347;283348;283349	380019;380020;380021;380022;380023;380024;380025;380026;380027;380028;380029;380030;380031;380032;380033;380034;380035	380029			17	
SMMSSYSAADR	0	Oxidation (M)	1220.4802	0.48017233	1141	P18583	SON	Protein SON	yes	no	0	0	1	0	By MS/MS			By MS/MS	2	0		2								1			1	24.144	23.143	2	0.013038	19354	160511_QHF_FH_JSI12i_2	55.549	44.398			1.167	1.0188	NaN	1	1	Median	1.167	1.0188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15204000	5513200	9691100	15204000	5513200	9691100	0	0	0	0	0	0	0	0	0	46877	1141	44125	283350;283351	380036;380037	380036		778	2	
SMMSSYTADR	0	Unmodified	1147.4638	0.46379399	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	24.246	23.683	2	0.0017434	19718	160511_QHF_FH_JSI11i_2	64.04	55.177			0.99246	0.94782	9.6097	4	1	Median	1.0767	0.88674	NaN	1	0	Median	0.80058	0.97587	NaN	1	0	Median	0.92345	0.92058	NaN	1	0	Median	1.0666	1.1046	NaN	1	1	Median	136080000	71984000	64097000	26035000	13439000	12596000	35526000	22825000	12700000	51574000	24538000	27036000	22946000	11182000	11765000	46878	1141	44126	283352;283353;283354;283355;283356	380038;380039;380040;380041	380039			4	
SMNINLWSEITELLYK	1	Unmodified	1952.9918	0.99175008	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	100.05	92.159	2;3	3.6287E-139	49975	160513_QHF_FH_JSI12Kac_6	277.31	254.08			0.7476	0.82511	23.284	5	1	Median	0.94846	0.82511	NaN	1	0	Median	0.807	0.95759	14.428	2	0	Median	0.59482	0.55735	NaN	1	1	Median	0.7476	0.80439	NaN	1	0	Median	1187400000	629950000	557450000	269150000	120610000	148540000	577290000	312290000	264990000	199180000	125540000	73638000	141790000	71508000	70281000	46879	1544	44127	283357;283358;283359;283360;283361	380042;380043;380044;380045;380046;380047;380048;380049;380050	380045			9	
SMNINLWSEITELLYK	1	Oxidation (M)	1968.9867	0.98666471	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	99.341	90.01	2	1.3527E-75	49481	160513_QHF_FH_JSI12Kac_6	229.97	210.87			0.96849	0.92076	28.665	3	0	Median	1.6715	1.4321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96849	0.92076	NaN	1	0	Median	0.80537	0.8368	NaN	1	0	Median	233710000	123860000	109850000	70597000	37672000	32925000	0	0	0	48179000	24594000	23585000	114940000	61592000	53344000	46880	1544	44127	283362;283363;283364	380051;380052	380051		1218	2	
SMNSALGK	1	Unmodified	806.39564	0.39563807	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.41		4	1				1			1	1	3	1	14.486	12.838	2	0.0017782	10397	160511_QHF_FH_JSI12i_2	97.798	49.625			1.0051	1.0898	61.886	6	5	Median	3.9589	3.3627	NaN	1	1	Median	0.87448	1.0483	NaN	1	1	Median	1.1551	1.1329	50.085	3	2	Median	0.64838	0.70871	NaN	1	1	Median	858970000	390840000	468130000	159460000	44362000	115100000	152590000	75754000	76834000	358370000	155360000	203010000	188550000	115370000	73183000	46881	2362	44128	283365;283366;283367;283368;283369;283370	380053;380054;380055;380056;380057;380058	380054			6	
SMNSQYLK	1	Unmodified	969.45897	0.45896661	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	21.611	20.786	2	0.0002239	17162	160511_QHF_FH_JSI11i_2	109.71	70.172			1.0271	1.2084	26.693	4	1	Median	0.88218	0.75698	NaN	1	0	Median	1.0226	1.2671	NaN	1	0	Median	1.3466	1.3829	NaN	1	1	Median	1.0317	1.1523	NaN	1	0	Median	509140000	222670000	286470000	109200000	53083000	56121000	94640000	50446000	44194000	159290000	56328000	102960000	146000000	62815000	83190000	46882	975	44129	283371;283372;283373;283374;283375;283376	380059;380060;380061;380062;380063;380064;380065	380063			7	
SMPDAMPLPGVGEELK	1	Acetyl (Protein N-term)	1711.8161	0.81609391	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	96.938	96.654	2	7.6855E-06	85689	160511_QHF_FH_JSI9i_1	55.196	48.068			1.0692	1.0175	53.857	5	1	Median	2.1915	1.8165	88.564	2	1	Median	0.85917	1.0175	NaN	1	0	Median	1.0262	1.008	NaN	1	0	Median	1.0692	1.1019	NaN	1	0	Median	258390000	119400000	138990000	103020000	42906000	60111000	62282000	33680000	28603000	41307000	18537000	22770000	51785000	24279000	27505000	46883	389	44130	283377;283378;283379;283380;283381	380066;380067;380068;380069;380070;380071;380072	380071			7	
SMPEQTGEK	1	Oxidation (M)	1021.4386	0.4386251	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.57	10			1	3	3				3	3	6	5	6.729	3.1717	2	8.4467E-06	1783	160513_QHF_FH_JSI11Kac_3	130.75	105.82			0.98961	1.0799	47.249	15	2	Median	1.7545	1.4203	NaN	1	0	Median	0.92628	1.0983	4.3936	3	0	Median	1.0317	0.99718	68.311	6	1	Median	0.98961	1.0799	39.835	5	1	Median	3449000000	1708400000	1740600000	405430000	168580000	236850000	681920000	325450000	356480000	1039700000	512380000	527370000	1321900000	701950000	619920000	46884	2033	44131	283382;283383;283384;283385;283386;283387;283388;283389;283390;283391;283392;283393;283394;283395;283396;283397;283398	380073;380074;380075;380076;380077;380078;380079;380080;380081;380082;380083;380084;380085;380086;380087;380088;380089;380090;380091;380092;380093	380082		1692	21	
SMPEQTGEK	1	Unmodified	1005.4437	0.44371047	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.55	4	1	1		1	3				2	2	3	3	11.062	7.8807	2	2.8574E-06	7265	160511_QHF_FH_JSI12i_1	124.98	104.46			0.99502	0.99853	15.283	10	1	Median	1.3061	1.0872	11.387	2	0	Median	0.88723	1.0612	14.545	2	0	Median	1.0877	1.0584	22.651	3	0	Median	0.87159	0.92636	1.7792	3	1	Plateau	11004000000	5628000000	5376000000	2711200000	1264400000	1446800000	2583100000	1400500000	1182700000	3045500000	1538600000	1506900000	2664300000	1424600000	1239600000	46885	2033	44131	283399;283400;283401;283402;283403;283404;283405;283406;283407;283408	380094;380095;380096;380097;380098;380099;380100;380101;380102;380103;380104;380105;380106;380107;380108;380109	380099			16	
SMPGKPPGMDPIGIMASALR	1	Unmodified	2025.021	0.020958498	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		95.345	94.864	3	0.00026483	77644	160511_QHF_FH_JSI9i_3	55.206	50.205			0.60874	0.54624	26.377	2	0	Median	0.53878	0.4533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68779	0.65824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45449000	30558000	14891000	19161000	13087000	6074100	0	0	0	26288000	17471000	8816600	0	0	0	46886	2220	44132	283409;283410	380110;380111;380112;380113	380113			4	
SMPHQEILAADEVLQESEMR	0	Unmodified	2312.0777	0.077681334	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	78.298	77.381	3	5.4907E-05	68039	160511_QHF_FH_JSI11i_2	69.765	62.183			1.204	1.2673	54.867	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84752	0.85977	NaN	1	1	Median	1.7103	1.868	NaN	1	1	Median	45577000	23979000	21598000	0	0	0	0	0	0	27440000	17783000	9657300	18137000	6196000	11941000	46887	5482	44133	283411;283412;283413	380114;380115;380116	380116			3	
SMPIRKDDEVQVVR	1	Unmodified	1670.8774	0.87738903	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	2	By MS/MS	By MS/MS			3	0			3							2	1			33.031	31.619	3;4	2.6371E-05	26453	160511_QHF_FH_JSI10i_3	114.7	93.458			1.2776	1.1442	8.6272	3	1	Median	1.382	1.1084	11.921	2	0	Median	0.99939	1.1442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	339540000	134550000	204990000	279760000	105360000	174400000	59778000	29183000	30595000	0	0	0	0	0	0	46888	1949;5450	44134	283414;283415;283416	380117;380118;380119;380120	380117			4	
SMPIRKDDEVQVVR	1	Acetyl (K);Oxidation (M)	1728.8829	0.88286834	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	1	0	1	2		By matching	By MS/MS	By matching	14.8	0.433							1	3			1	1	2	45.197	35.051	3	0.005235	19819	160513_QHF_FH_JSI11Kac_5	54.276	39.114			0.58446	0.63189	50.241	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0756	1.2573	NaN	1	0	Median	0.39925	0.38969	NaN	1	0	Median	0.58446	0.63189	24.639	2	0	Median	19793000	13140000	6652300	0	0	0	2965700	1559100	1406600	12106000	8604200	3501700	4721100	2977100	1744000	46889	1949;5450	44134	283417;283418;283419;283420	380121	380121	1962	1619	1	
SMPLIYWFSR	0	Unmodified	1298.6482	0.64816436	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.545	83.22	2	4.3764E-06	46256	160513_QHF_FH_JSI9Kac_6	116.52	100.32			0.96887	0.93474	12.848	4	1	Median	1.0183	0.87948	NaN	1	0	Median	0.69116	0.81552	NaN	1	0	Median	1.125	1.0898	NaN	1	0	Median	0.92182	0.99347	NaN	1	1	Median	593710000	321900000	271810000	116270000	60845000	55425000	352000000	200520000	151490000	67978000	30343000	37635000	57458000	30189000	27269000	46890	2547	44135	283421;283422;283423;283424	380122;380123;380124;380125;380126;380127;380128	380126			7	
SMPTSGALDR	0	Unmodified	1033.4862	0.48624399	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.48	5	4	2				2			3	2	5	3	26.706	25.319	2	7.5472E-05	22080	160511_QHF_FH_JSI10i_2	88.177	54.627			1.0689	1.1985	24.435	11	3	Median	1.2668	1.0548	28.895	2	0	Median	1.1155	1.3358	15.336	2	1	Median	1.207	1.1796	31.721	5	2	Median	0.99807	1.1021	14.853	2	0	Median	3034900000	1348400000	1686500000	611470000	259990000	351470000	597380000	302480000	294910000	1187800000	494990000	692820000	638280000	290960000	347320000	46891	1460	44136	283425;283426;283427;283428;283429;283430;283431;283432;283433;283434;283435;283436;283437	380129;380130;380131;380132;380133;380134;380135;380136;380137;380138;380139;380140;380141;380142;380143;380144;380145	380145			16	
SMPVLGSVSSVTK	1	Unmodified	1290.6853	0.68533773	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	60.572	59.918	2	0.00068515	52715	160511_QHF_FH_JSI9i_2	67.456	55.966			3.3019	5.0082	50.6	4	4	Linear	3.7886	3.189	NaN	1	1	Median	2.8777	3.5829	NaN	1	1	Median	3.8943	3.9632	NaN	1	1	Median	1.3756	1.3161	NaN	1	1	Median	529340000	86488000	442860000	93067000	22596000	70471000	174950000	25248000	149700000	230230000	27941000	202290000	31103000	10702000	20401000	46892	8	44137	283438;283439;283440;283441;283442;283443	380146;380147;380148;380149;380150;380151	380147			6	
SMPWNVDTLSK	1	Unmodified	1276.6122	0.61217279	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.518	65.917	2	0.00015536	59562	160511_QHF_FH_JSI10i_1	93.667	77.464			1.897	1.6654	54.251	4	4	Median	2.2631	1.8188	NaN	1	1	Median	1.1251	1.2953	NaN	1	1	Median	1.5901	1.525	NaN	1	1	Median	4.0658	4.3725	NaN	1	1	Median	1219100000	394250000	824830000	178110000	47925000	130180000	326670000	146410000	180260000	329630000	133970000	195660000	384660000	65941000	318720000	46893	2738	44138	283444;283445;283446;283447	380152;380153;380154;380155	380154			4	
SMQDGWGESDGPVTGAR	0	Unmodified	1748.7424	0.74241169	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			43.75	43.332	2	0.00029027	38946	160511_QHF_FH_JSI10i_1	70.889	62.159			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46894	5464	44139	283448	380156	380156			1	
SMQDVVEDFK	1	Unmodified	1196.5383	0.53833914	71	CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.81	4	5	1				1	1		3	3	4	2	61.575	59.856	2	2.7485E-11	53181	160511_QHF_FH_JSI9i_1	151.15	98.869		+	1.0375	0.9809	31.987	11	1	Median	1.0933	0.9007	8.2694	3	0	Median	0.77375	0.92728	11.931	3	0	Plateau	1.1093	1.0798	59.026	3	1	Median	1.0955	1.1955	3.4919	2	0	Median	4923100000	2291600000	2631500000	900280000	418850000	481430000	1150100000	597690000	552380000	1615300000	772070000	843220000	1257400000	503010000	754430000	46895	71	44140	283449;283450;283451;283452;283453;283454;283455;283456;283457;283458;283459;283460	380157;380158;380159;380160;380161;380162;380163;380164;380165;380166;380167;380168;380169;380170;380171;380172;380173;380174;380175;380176;380177;380178;380179;380180;380181;380182;380183;380184;380185;380186;380187;380188	380176			32	
SMQDVVEDFK	1	Oxidation (M)	1212.5333	0.53325376	71	CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	yes	no	0	0	1	0		By matching		By MS/MS	1	0	2										1		1	38.589	38.101	2	0.0010191	34675	160511_QHF_FH_JSI12i_1	70.441	59.612		+	1.288	1.4417	10.3	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1534	1.3404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4382	1.5506	NaN	1	0	Median	75034000	36570000	38463000	0	0	0	38293000	19542000	18751000	0	0	0	36741000	17028000	19712000	46896	71	44140	283461;283462	380189;380190	380190		33	2	
SMQETVNK	1	Unmodified	935.43823	0.43823117	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.6373	9.2718	2	0.00071972	6753	160511_QHF_FH_JSI9i_1	99.139	29.14			1.2481	1.1978	23.129	4	2	Median	1.4859	1.2162	NaN	1	0	Median	0.66337	0.78728	NaN	1	1	Median	1.2382	1.1797	NaN	1	1	Median	1.2582	1.3217	NaN	1	0	Median	461150000	220790000	240360000	91795000	38317000	53478000	123850000	60746000	63100000	107380000	50491000	56891000	138130000	71235000	66891000	46897	1360	44141	283463;283464;283465;283466	380191;380192;380193;380194;380195	380194			5	
SMQGFPFYDK	1	Unmodified	1218.5379	0.53794521	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							3	3	2	2	65.144	64.252	2	3.4834E-06	57018	160511_QHF_FH_JSI10i_2	110.53	98.686			0.92028	0.96376	14.051	9	0	Median	0.967	0.80362	2.6588	2	0	Median	0.742	0.84434	9.0556	3	0	Median	1.0681	1.055	3.9349	2	0	Median	0.99188	1.0819	7.9631	2	0	Median	1479700000	724460000	755210000	283400000	137090000	146300000	354220000	202500000	151720000	496180000	217720000	278460000	345870000	167140000	178730000	46898	920	44142	283467;283468;283469;283470;283471;283472;283473;283474;283475;283476	380196;380197;380198;380199;380200;380201;380202;380203;380204;380205;380206;380207;380208;380209;380210;380211;380212;380213;380214;380215;380216;380217;380218;380219	380219			24	
SMQNHAAVFR	0	Unmodified	1159.5557	0.55566096	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	16.897	16.279	2;3	1.4951E-08	13332	160511_QHF_FH_JSI10i_3	145.72	141.37			0.99664	0.95882	19.619	7	1	Median	1.0726	0.85054	9.1495	2	0	Median	0.89706	1.0465	12.369	2	0	Median	1.2682	1.168	32.169	2	1	Median	0.99579	1.0064	NaN	1	0	Median	1101400000	491030000	610360000	626520000	265850000	360660000	318210000	156050000	162170000	100830000	47378000	53450000	55828000	21748000	34080000	46899	1367	44143	283477;283478;283479;283480;283481;283482;283483	380220;380221;380222;380223;380224;380225;380226;380227	380223			8	
SMQNHAAVFR	0	Oxidation (M)	1175.5506	0.55057558	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			6							3	3			13.97	13.09	2;3	1.5017E-09	7282	160511_QHF_FH_JSI9i_3	136.57	129.35			0.92277	0.82618	14.137	6	1	Median	0.95194	0.76909	14.366	3	1	Median	0.75506	0.87988	15.804	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	310330000	158910000	151420000	140420000	64761000	75655000	169910000	94145000	75768000	0	0	0	0	0	0	46900	1367	44143	283484;283485;283486;283487;283488;283489	380228;380229;380230;380231;380232;380233;380234;380235	380232		999	8	
SMQNWHQLENLSNFIK	1	Unmodified	1987.9574	0.95743026	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	2	2	1	88.182	87.618	2;3	9.1245E-16	73630	160511_QHF_FH_JSI10i_3	161.32	151.12			0.81704	0.80519	18.156	7	3	Median	0.90567	0.75468	9.1604	2	1	Median	0.70181	0.82254	7.5994	2	1	Median	0.82241	0.77549	37.704	2	1	Median	0.93667	0.95564	NaN	1	0	Median	849610000	457020000	392590000	122830000	64622000	58213000	152180000	83298000	68878000	426330000	222140000	204190000	148270000	86959000	61307000	46901	4268	44144	283490;283491;283492;283493;283494;283495;283496	380236;380237;380238;380239;380240;380241;380242;380243;380244;380245;380246;380247;380248;380249	380244			14	
SMQNWHQLENLSNFIK	1	Oxidation (M)	2003.9523	0.95234489	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				81.966	80.653	3	0.0061099	66161	160511_QHF_FH_JSI9i_3	49.049	40.106			1.5198	1.2301	NaN	1	1	Median	1.5198	1.2301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36766000	14328000	22438000	36766000	14328000	22438000	0	0	0	0	0	0	0	0	0	46902	4268	44144	283497	380250	380250		2423	1	
SMQPGTSLAK	1	Unmodified	1018.5117	0.51173046	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6		3					3			1	1	2	2	24.562	20.734	2	0.00015996	17069	160511_QHF_FH_JSI11i_2	95.502	36.521			0.40699	0.52292	54.882	5	4	Linear	0.48295	0.41306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63559	0.63364	71.552	2	1	Median	0.74957	0.8121	62.254	2	2	Median	458670000	315040000	143630000	113800000	78105000	35693000	0	0	0	200140000	134550000	65581000	144740000	102380000	42360000	46903	3217	44145	283498;283499;283500;283501;283502;283503	380251;380252;380253;380254;380255;380256	380255			6	
SMQVVPLDK	1	Unmodified	1015.5372	0.53721693	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	44.283	43.617	2	0.0012078	39838	160511_QHF_FH_JSI12i_1	70.056	57.7			0.84066	0.89135	9.2146	4	0	Median	1.1632	0.95341	NaN	1	0	Median	0.84333	0.97699	NaN	1	0	Median	0.838	0.81509	NaN	1	0	Median	0.81965	0.83333	NaN	1	0	Median	428410000	231690000	196720000	90303000	43673000	46631000	100890000	58967000	41920000	124090000	66779000	57311000	113130000	62274000	50854000	46904	4481	44146	283504;283505;283506;283507	380257;380258	380258			2	
SMSAPVIFDR	0	Unmodified	1121.5539	0.55392963	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	58.036	57.44	2	2.0054E-09	49370	160511_QHF_FH_JSI12i_3	131.22	115.84			0.96622	1.0854	31.054	5	1	Median	NaN	NaN	NaN	0	0	Median	0.81463	0.9881	NaN	1	0	Median	1.3678	1.3547	48.765	2	1	Median	1.2365	1.3165	27.296	2	0	Median	764770000	374140000	390630000	0	0	0	141360000	89215000	52140000	356090000	159430000	196650000	267330000	125490000	141830000	46905	444	44147	283508;283509;283510;283511;283512;283513	380259;380260;380261;380262;380263;380264;380265	380264			6	
SMSDLYDMQK	1	Oxidation (M)	1232.5053	0.50532445	2879	Q5BKX6	SLC45A4	Solute carrier family 45 member 4	yes	yes	0	0	1	0			By MS/MS	By MS/MS	13	0						2						1	1	41.19	32.286	2	0.016359	18395	160513_QHF_FH_JSI11Kac_3	47.187	26.285			1.1253	1.1406	20.118	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3722	1.3149	NaN	1	0	Median	0.92278	0.98933	NaN	1	0	Median	7748600	3499500	4249100	0	0	0	0	0	0	3384200	1313500	2070800	4364300	2186100	2178300	46906	2879	44148	283514;283515	380266	380266		2163	1	
SMSDLYDMQK	1	Unmodified	1216.5104	0.51040983	2879	Q5BKX6	SLC45A4	Solute carrier family 45 member 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	56.284	46.899	2	0.010179	25243	160513_QHF_FH_JSI11Kac_3	55.567	43.341			1.1348	1.2308	7.3744	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1348	1.342	NaN	1	1	Median	1.2075	1.1589	NaN	1	0	Median	1.1332	1.2308	NaN	1	0	Median	9869500	5228400	4641200	0	0	0	3044200	1634100	1410100	3236600	1425700	1810900	3588700	2168600	1420100	46907	2879	44148	283516;283517;283518	380267;380268;380269;380270	380268			4	
SMSDPDQDFDKEPDSDSTK	2	Unmodified	2142.8535	0.85353786	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	1			By matching	By MS/MS	1	0	2											1	1	33.042	32.634	3	6.8009E-06	29405	160511_QHF_FH_JSI12i_1	87.16	78.56			0.9705	0.96741	2.8145	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0025	0.94835	NaN	1	0	Median	0.93949	0.98686	NaN	1	0	Median	78932000	34504000	44428000	0	0	0	0	0	0	49220000	19647000	29573000	29713000	14857000	14855000	46908	5677	44149	283519;283520	380271	380271			1	
SMSDVSAEDVQNLR	0	Unmodified	1549.7042	0.70423527	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.774	47.094	2	7.293E-52	42814	160511_QHF_FH_JSI12i_1	258.48	241.81			1.0719	1.0575	12.412	4	0	Median	1.1282	0.90358	NaN	1	0	Median	0.8746	1.0256	NaN	1	0	Median	1.2536	1.2167	NaN	1	0	Median	1.0184	1.0904	NaN	1	0	Median	1047700000	503800000	543940000	253340000	111170000	142180000	235950000	124860000	111080000	290320000	123370000	166950000	268130000	144400000	123740000	46909	3799	44150	283521;283522;283523;283524	380272;380273;380274;380275;380276;380277;380278;380279	380275			8	
SMSHQAAIASQR	0	Unmodified	1285.6197	0.61971778	2829	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			10.105	9.4622	2;3	1.6141E-05	7063	160511_QHF_FH_JSI9i_3	113.22	85.482			2.9468	2.4316	NaN	1	0	Median	2.9468	2.4316	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17513000	5922100	11591000	17513000	5922100	11591000	0	0	0	0	0	0	0	0	0	46910	2829	44151	283525;283526	380280;380281	380281			2	
SMSQAETEGAK	1	Unmodified	1137.4972	0.49720261	3423	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.5642	8.8311	2	0.0070608	6396	160511_QHF_FH_JSI9i_1	52.6	40.072			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46911	3423	44152	283527	380282	380282			1	
SMSTEGLMK	1	Unmodified	982.44635	0.44635301	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	1	3	1	31.364	30.592	2	4.3664E-06	25962	160511_QHF_FH_JSI11i_2	111.95	78.209			1.3941	1.2564	14.644	5	3	Median	1.3388	1.0932	7.8715	2	2	Median	0.9982	1.2564	NaN	1	0	Median	1.4476	1.4448	4.261	2	1	Median	NaN	NaN	NaN	0	0	Median	2102000000	930410000	1171600000	683440000	294570000	388870000	303680000	155830000	147850000	1114900000	480010000	634880000	0	0	0	46912	517	44153	283528;283529;283530;283531;283532;283533;283534;283535	380283;380284;380285;380286;380287;380288;380289;380290;380291	380289			9	
SMSTEGLMK	1	Oxidation (M)	998.44127	0.44126763	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	18.87	18.75	2	0.012678	15956	160511_QHF_FH_JSI11i_1	72.23	59.193			0.92378	0.90767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92378	0.90767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	91471000	47750000	43721000	0	0	0	0	0	0	91471000	47750000	43721000	0	0	0	46913	517	44153	283536;283537	380292;380293	380292		192	2	
SMSTEGLMKFVDSK	2	Acetyl (K)	1600.7477	0.74767999	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.625	74.108	2	0.00082059	39071	160513_QHF_FH_JSI11Kac_5	97.911	88.957			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1635200	1635200	0	0	0	0	0	0	0	1635200	1635200	0	0	0	0	46914	517	44154	283538	380294	380294	266;268		1	
SMSTVLK	1	Unmodified	764.41023	0.4102255	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				23.163	22.181	2	0.039268	18972	160511_QHF_FH_JSI9i_2	49.65	0			2.1159	1.7724	NaN	1	1	Median	2.1159	1.7724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74121000	35858000	38263000	74121000	35858000	38263000	0	0	0	0	0	0	0	0	0	46915	1168	44155	283539	380295	380295			1	
SMTEAEQQQLIDDHFLFDK	1	Oxidation (M)	2310.0474	0.047427063	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	76.075	74.831	3	3.8441E-08	64658	160511_QHF_FH_JSI12i_2	104.03	99.024			0.84428	0.9186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84428	0.9186	NaN	1	0	Median	25379000	15019000	10359000	0	0	0	0	0	0	0	0	0	25379000	15019000	10359000	46916	1017	44156	283540	380296;380297;380298	380298		611	3	
SMTEAEQQQLIDDHFLFDK	1	Unmodified	2294.0525	0.052512441	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								1	5	2	1	80.773	80.178	2;3	1.8296E-138	70598	160511_QHF_FH_JSI9i_2	282.06	267.81			0.83973	0.95043	22.864	8	4	Median	1.1117	0.95126	NaN	1	0	Median	0.82391	0.99407	30.17	4	2	Median	0.9279	0.94462	17.74	2	1	Median	0.6768	0.74043	NaN	1	1	Median	1492200000	705770000	786420000	336580000	154920000	181660000	439480000	232500000	206980000	700200000	307390000	392820000	15919000	10958000	4961100	46917	1017	44156	283541;283542;283543;283544;283545;283546;283547;283548;283549	380299;380300;380301;380302;380303;380304;380305;380306;380307;380308;380309;380310	380303			12	
SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR	1	Oxidation (M)	3602.7749	0.77490438	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			100.97	100.8	4	7.1818E-10	83445	160511_QHF_FH_JSI10i_3	62.706	52.994			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63491000	27912000	35579000	0	0	0	63491000	27912000	35579000	0	0	0	0	0	0	46918	1017	44157	283550	380311	380311		611;612	1	
SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR	1	Acetyl (K)	3628.7906	0.79055444	1017	P12277	CKB	Creatine kinase B-type	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	96.612	87.188	4	2.0615E-10	49571	160513_QHF_FH_JSI11Kac_6	87.948	78.013			1.2161	1.2172	14.424	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1583	1.0992	NaN	1	0	Median	1.2767	1.3479	NaN	1	0	Median	582100000	235380000	346720000	0	0	0	0	0	0	319400000	127240000	192160000	262700000	108140000	154560000	46919	1017	44157	283551;283552	380312	380312	831		1	
SMTLEIR	0	Unmodified	848.44259	0.44258826	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		4						4		2	2	2	2	44.665	38.989	2	3.8212E-05	21796	160513_QHF_FH_JSI11Kac_5	127.84	39.109			1.1084	1.1258	10.172	8	0	Median	1.19	1.0147	2.8004	2	0	Median	0.8849	1.0589	18.123	2	0	Median	1.1204	1.1258	0.43124	2	0	Median	1.1001	1.2209	0.87677	2	0	Median	827290000	412360000	414940000	143100000	68896000	74203000	172290000	90023000	82268000	290420000	144980000	145440000	221480000	108460000	113030000	46920	1367	44158	283553;283554;283555;283556;283557;283558;283559;283560	380313;380314;380315;380316;380317;380318;380319;380320;380321;380322;380323;380324;380325;380326;380327;380328	380322			16	
SMTLKEAIK	2	Acetyl (K)	1061.5791	0.57908174	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		60.504	49.47	2	0.0050342	28129	160513_QHF_FH_JSI11Kac_4	73.985	36.427			0.25154	0.2456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25154	0.2456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7273700	6069100	1204600	0	0	0	0	0	0	7273700	6069100	1204600	0	0	0	46921	1300	44159	283561	380329;380330	380329	1238		2	
SMTLLNTMDR	0	Unmodified	1180.558	0.55802872	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS		3	0			2								1	1		54.772	53.996	2	0.0063876	47847	160511_QHF_FH_JSI11i_3	52.79	33.519			1.9162	2.0029	5.3541	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6488	1.9285	NaN	1	0	Median	2.227	2.0802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84781000	32063000	52717000	0	0	0	17843000	9075000	8768100	66938000	22988000	43949000	0	0	0	46922	1020	44160	283562;283563	380331	380331			1	
SMTNLQIK	1	Unmodified	933.49535	0.49535211	5017	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	33.937	33.044	2	0.0057881	28966	160511_QHF_FH_JSI10i_2	64.567	39.673			0.9581	0.96811	60.2	3	1	Median	NaN	NaN	NaN	0	0	Median	0.6883	0.8429	NaN	1	0	Median	0.9581	0.96811	NaN	1	0	Median	2.2534	2.545	NaN	1	1	Median	450010000	229270000	220750000	0	0	0	129520000	74201000	55315000	168370000	96548000	71826000	152120000	58519000	93605000	46923	5017	44161	283564;283565;283566	380332;380333;380334	380334			3	
SMTSAHGSASVNSR	0	Unmodified	1390.6259	0.62592537	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			7.6423	7.1055	3	0.053864	5013	160511_QHF_FH_JSI10i_3	32.702	24.189			1.0519	1.0394	4.2957	2	0	Median	1.2063	1.0083	NaN	1	0	Median	0.91721	1.0714	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32196000	15934000	16262000	14289000	5980200	8308700	17907000	9954000	7953400	0	0	0	0	0	0	46924	2928	44162	283567;283568	380335	380335			0	
SMVAVMDSDTTGK	1	Unmodified	1340.5952	0.59520209	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.37	5.77	4	4	4			2	4	1		5	6	4	4	44.156	39.942	2	5.8897E-24	36334	160511_QHF_FH_JSI11i_1	183.33	143.71			0.84837	0.84572	22.856	14	2	Median	0.95177	0.79843	44.787	4	2	Median	0.69658	0.83568	10.288	4	0	Median	0.88883	0.87831	11.185	3	0	Median	0.85194	0.91864	7.217	3	0	Plateau	2772400000	1417600000	1354700000	533310000	263730000	269570000	668490000	361060000	307430000	874770000	465620000	409160000	695800000	327230000	368580000	46925	813	44163	283569;283570;283571;283572;283573;283574;283575;283576;283577;283578;283579;283580;283581;283582;283583;283584;283585;283586;283587	380336;380337;380338;380339;380340;380341;380342;380343;380344;380345;380346;380347;380348;380349;380350;380351;380352;380353;380354;380355;380356;380357;380358;380359;380360;380361;380362;380363;380364;380365;380366;380367	380338			32	
SMVAVMDSDTTGK	1	Oxidation (M)	1356.5901	0.59011671	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	6.2	6.37	3						2				4		1	30.243	23.773	2	0.00012323	21441	160511_QHF_FH_JSI10i_1	77.593	61.34			0.99129	1.1019	45.369	3	3	Median	NaN	NaN	NaN	0	0	Median	0.8874	0.97557	17.216	2	2	Median	NaN	NaN	NaN	0	0	Median	2.0153	2.0798	NaN	1	1	Median	37405000	13498000	23907000	0	0	0	2476500	1293800	1182700	0	0	0	34928000	12204000	22724000	46926	813	44163	283588;283589;283590;283591;283592	380368;380369;380370;380371;380372	380371		340;341	5	
SMVDELFAEIVR	0	Unmodified	1407.7068	0.70680145	5598	Q9Y3L5	RAP2C	Ras-related protein Rap-2c	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	101.94	101.79	2	2.6939E-05	87717	160511_QHF_FH_JSI12i_2	114.83	96.054			0.97033	1.0247	15.053	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92093	0.92125	NaN	1	0	Median	1.0224	1.1398	NaN	1	1	Median	340800000	177820000	162980000	0	0	0	0	0	0	243110000	120600000	122510000	97690000	57222000	40468000	46927	5598	44164	283593;283594	380373;380374	380373			1	
SMVEDITGLR	0	Unmodified	1119.5594	0.55940893	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	59.685	58.667	2	0.00017002	51841	160511_QHF_FH_JSI10i_2	94.692	74.132			1.0764	1.1932	11.367	4	4	Median	1.3388	1.1241	NaN	1	1	Median	0.93339	1.1543	17.476	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1031	1.2666	NaN	1	1	Median	1083100000	544090000	539040000	219140000	93129000	126010000	557810000	316920000	240890000	0	0	0	306190000	134040000	172140000	46928	1085	44165	283595;283596;283597;283598;283599;283600	380375;380376;380377;380378;380379;380380	380379			6	
SMVEEGTGLR	0	Unmodified	1077.5125	0.51245874	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	27.144	26.067	2	0.019802	21781	160511_QHF_FH_JSI12i_2	64.04	54.053			0.92448	1.106	12.258	3	0	Plateau	1.2038	1.0391	NaN	1	0	Median	0.92448	1.1272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8371	0.88583	NaN	1	0	Median	120470000	64971000	55498000	45163000	20355000	24808000	51822000	30760000	21062000	0	0	0	23484000	13855000	9628900	46929	2636	44166	283601;283602;283603	380381;380382	380381			0	
SMVEQLDK	1	Unmodified	948.45863	0.45863226	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	2	1		27.002	26.29	2	0.0025198	22746	160511_QHF_FH_JSI9i_1	79.474	48.185			1.6707	1.819	50.762	4	0	Median	3.7118	3.0832	NaN	1	0	Median	1.3978	1.6618	60.405	2	0	Median	1.2792	1.2989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	515170000	199760000	315410000	166100000	42060000	124040000	265030000	118280000	146750000	84034000	39421000	44613000	0	0	0	46930	5205	44167	283604;283605;283606;283607	380383;380384	380383			2	
SMVNLMDRDGNGK	1	Unmodified	1435.6548	0.65478266	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			35.287	33.866	3	0.0017907	27635	160511_QHF_FH_JSI9i_3	54.343	40.085			1.1635	1.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1635	1.318	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23287000	9189700	14097000	0	0	0	23287000	9189700	14097000	0	0	0	0	0	0	46931	871	44168	283608;283609	380385;380386	380386			2	
SMVNTKPEK	2	Unmodified	1032.5274	0.52738052	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		6	8					2		3	4	5	4	9.2767	7.871	2;3	7.2469E-05	6249	160511_QHF_FH_JSI11i_3	77.662	59.843			1.0152	1.1175	45.214	16	3	Median	2.0033	1.7032	25.938	3	1	Median	0.94523	1.1175	7.8366	4	0	Median	1.0276	1.0071	17.166	5	0	Median	0.85648	0.93163	70.537	4	2	Median	7829400000	3812900000	4016400000	681840000	205690000	476150000	1176700000	605160000	571550000	2718100000	1221200000	1497000000	3252700000	1780900000	1471800000	46932	2738	44169	283610;283611;283612;283613;283614;283615;283616;283617;283618;283619;283620;283621;283622;283623;283624;283625	380387;380388;380389;380390;380391;380392;380393;380394;380395;380396;380397;380398;380399;380400;380401;380402;380403;380404	380388			18	
SMVNTKPEK	2	Oxidation (M)	1048.5223	0.52229515	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	8.5301	8.6278	2	0.018625	6057	160511_QHF_FH_JSI12i_3	70.1	45.945			0.64669	0.67137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64669	0.67137	NaN	1	0	Median	115700000	74326000	41369000	0	0	0	0	0	0	0	0	0	115700000	74326000	41369000	46933	2738	44169	283626	380405;380406	380406		2118	2	
SMVPVQVQLDVPVVK	1	Unmodified	1636.9222	0.92221396	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								1	3	3	3	90.672	90.273	2;3	1.7362E-06	79475	160511_QHF_FH_JSI9i_2	156.69	146.73			0.75908	0.79788	24.859	10	3	Median	1.0013	0.86224	NaN	1	0	Median	0.66684	0.78851	38.602	3	1	Median	0.881	0.85823	28.119	3	1	Median	0.62607	0.67552	8.9378	3	1	Plateau	272220000	150200000	122020000	19881000	8661000	11220000	80626000	48174000	32452000	98467000	53085000	45382000	73247000	40276000	32971000	46934	1145	44170	283627;283628;283629;283630;283631;283632;283633;283634;283635;283636	380407;380408;380409;380410;380411;380412;380413;380414;380415;380416	380414			10	
SMVQFIGR	0	Unmodified	936.48512	0.48512178	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	49.999	49.049	2	0.00060547	43357	160511_QHF_FH_JSI10i_2	102.72	72.001			0.99707	0.97612	9.8068	6	1	Median	1.1222	0.96252	7.5638	2	0	Median	0.79747	0.94925	7.2319	2	0	Median	1.1207	1.0605	15.015	2	1	Median	NaN	NaN	NaN	0	0	Median	343540000	166480000	177060000	134130000	59752000	74376000	113400000	61545000	51857000	96011000	45184000	50826000	0	0	0	46935	5717	44171	283637;283638;283639;283640;283641;283642;283643	380417;380418;380419;380420;380421	380420			5	
SMVTEEFNGSDWEK	1	Unmodified	1657.693	0.69300188	3299	Q7Z7K6	CENPV	Centromere protein V	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	61.153	60.24	2	9.4234E-25	51659	160511_QHF_FH_JSI12i_2	227.2	201.26			1.6637	1.7458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6637	1.7458	NaN	1	1	Median	29666000	3394900	26272000	0	0	0	0	0	0	12587000	0	12587000	17080000	3394900	13685000	46936	3299	44172	283644;283645	380422;380423;380424	380422			3	
SMYEEEINETR	0	Oxidation (M)	1415.5875	0.58747418	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								4	2	2	2	32.325	31.462	2	3.2498E-09	29287	160511_QHF_FH_JSI12i_1	130.98	108.75			1.1011	1.036	26.865	8	2	Median	1.0341	0.86318	32.892	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1322	1.0801	25.664	2	1	Median	1.1151	1.178	13.57	2	0	Median	305610000	138070000	167540000	139510000	66276000	73239000	0	0	0	83508000	37724000	45784000	82586000	34066000	48519000	46937	1180	44173	283646;283647;283648;283649;283650;283651;283652;283653;283654;283655	380425;380426;380427;380428;380429;380430;380431	380427		809	7	
SMYEEEINETR	0	Unmodified	1399.5926	0.59255956	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	1	2	33.282	32.454	2	2.9263E-05	28215	160511_QHF_FH_JSI9i_2	98.943	87.778			1.0491	1.0439	9.3881	5	0	Median	1.2037	1.0082	NaN	1	0	Median	0.85127	1.0455	NaN	1	0	Median	1.0756	1.0439	NaN	1	0	Median	0.9593	1.038	18.54	2	0	Median	2694100000	1321200000	1372900000	565540000	257740000	307800000	486360000	254280000	232080000	868830000	442320000	426510000	773410000	366870000	406540000	46938	1180	44173	283656;283657;283658;283659;283660	380432;380433;380434	380434			3	
SMYEEEINETRR	0	Unmodified	1555.6937	0.69367058	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		27.74	27.16	3	7.057E-05	22809	160511_QHF_FH_JSI11i_2	74.76	59.215			1.155	1.1595	17.181	4	0	Median	1.737	1.468	NaN	1	0	Median	0.86982	1.0919	NaN	1	0	Median	1.155	1.1007	15.864	2	0	Median	NaN	NaN	NaN	0	0	Median	273350000	132150000	141200000	71792000	27501000	44291000	97032000	50695000	46337000	104530000	53952000	50577000	0	0	0	46939	1180	44174	283661;283662;283663;283664	380435;380436;380437;380438;380439;380440	380438			6	
SMYLMIK	1	Unmodified	884.44998	0.44998183	4452	Q9BUT1	BDH2	3-hydroxybutyrate dehydrogenase type 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	55.695	55.453	2	0.013945	47671	160511_QHF_FH_JSI12i_3	68.485	43.486			0.80057	0.8105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80057	0.8105	NaN	1	1	Median	28636000	17066000	11570000	0	0	0	0	0	0	0	0	0	28636000	17066000	11570000	46940	4452	44175	283665;283666	380441;380442	380442			2	
SNADYQYQLLR	0	Unmodified	1369.6626	0.66262845	5335	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.128	47.713	2	4.8374E-05	43178	160511_QHF_FH_JSI11i_1	98.254	85.678			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46941	5335	44176	283667	380443	380443			1	
SNAHYNLQNAFNLAEQHLGLTK	1	Unmodified	2482.2353	0.23531968	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	87.514	87.1	3;4	5.775E-13	77387	160511_QHF_FH_JSI11i_3	108.57	100.18			0.86293	0.9987	14.999	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86293	0.9987	NaN	1	0	Median	1.1222	1.0547	NaN	1	0	Median	0.7095	0.79494	NaN	1	0	Median	220690000	124110000	96578000	0	0	0	37115000	21369000	15746000	109960000	54585000	55379000	73612000	48159000	25453000	46942	2162	44177	283668;283669;283670;283671;283672	380444;380445;380446;380447;380448	380445			5	
SNAPVHIDVGGHMYTSSLATLTK	1	Unmodified	2398.1951	0.19509435	3205	Q719H9	KCTD1	BTB/POZ domain-containing protein KCTD1	no	no	0	0	0	0				By MS/MS	3	0			1										1	69.826	69.528	3	6.0461E-07	60219	160511_QHF_FH_JSI12i_3	69.071	62.118			0.94032	1.0048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94032	1.0048	NaN	1	1	Median	12320000	6927100	5392900	0	0	0	0	0	0	0	0	0	12320000	6927100	5392900	46943	3205	44178	283673	380449	380449			1	
SNAQRQDIAFAYQR	0	Unmodified	1666.8176	0.81756596	870	P07355	ANXA2	Annexin A2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			5.5	6.06		3							1	2	2			35.471	31.781	3	4.6026E-08	27763	160511_QHF_FH_JSI10i_2	77.776	64.059			1.2407	1.0577	36.368	3	0	Median	1.2273	1.0455	1.6453	2	0	Median	1.6288	1.9622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236530000	104920000	131610000	116660000	56205000	60453000	119870000	48711000	71159000	0	0	0	0	0	0	46944	870	44179	283674;283675;283676;283677	380450;380451;380452;380453;380454	380453			5	
SNAQRQEISAAFK	1	Unmodified	1448.7372	0.73719038	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			25.464	24.146	2;3	9.1711E-05	19776	160511_QHF_FH_JSI10i_3	65.374	52.814			1.4757	1.4703	11.72	3	0	Plateau	1.55	1.2613	5.5233	2	0	Median	1.275	1.5273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171540000	76972000	94566000	80194000	35108000	45086000	91344000	41864000	49480000	0	0	0	0	0	0	46945	916	44180	283678;283679;283680	380455;380456;380457	380455			3	
SNASLTNNQNLIQSLK	1	Unmodified	1743.9115	0.91152593	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	60.294	59.514	2	4.3493E-183	53972	160511_QHF_FH_JSI11i_1	311.69	270.29			0.97993	0.9753	8.8104	8	1	Median	1.1945	0.99787	11.802	2	1	Median	0.74108	0.90111	4.9012	2	0	Median	0.97993	0.97816	7.0566	2	0	Median	0.98948	1.0667	6.3738	2	0	Median	1044400000	522810000	521560000	203980000	96677000	107300000	290100000	172990000	117110000	316110000	147180000	168940000	234180000	105960000	128210000	46946	1016	44181	283681;283682;283683;283684;283685;283686;283687;283688;283689	380458;380459;380460;380461;380462;380463;380464;380465;380466;380467;380468;380469;380470;380471;380472;380473	380459			16	
SNASTLESHETEEPAAK	1	Unmodified	1799.8174	0.81735077	5340	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.69	17.204	3	4.3791E-07	14577	160511_QHF_FH_JSI10i_1	101.28	95.374			1.0977	1.0197	18.842	4	1	Median	1.369	1.1281	NaN	1	0	Median	0.68372	0.83497	NaN	1	0	Median	0.98772	0.92177	NaN	1	0	Median	1.2198	1.2643	NaN	1	1	Median	248240000	118510000	129730000	67348000	25592000	41756000	66036000	35551000	30485000	50431000	24579000	25852000	64427000	32793000	31635000	46947	5340	44182	283690;283691;283692;283693	380474;380475;380476;380477	380476			3	
SNAVQEADSELK	1	Unmodified	1289.6099	0.60992418	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.679	30.407	2	2.3434E-05	26573	160511_QHF_FH_JSI9i_1	88.441	68.112			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46948	3004	44183	283694	380478	380478			1	
SNDEEAFTFAR	0	Unmodified	1285.5575	0.55749468	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.144	44.472	2	1.0464E-29	40080	160511_QHF_FH_JSI11i_1	190.57	177.54			0.87828	0.89527	4.9384	4	0	Median	1.0059	0.83419	NaN	1	0	Median	0.78292	0.9186	NaN	1	0	Median	0.94329	0.92812	NaN	1	0	Median	0.81776	0.87253	NaN	1	0	Median	1531100000	811430000	719620000	362400000	175760000	186640000	353530000	196550000	156980000	396750000	198430000	198320000	418380000	240690000	177690000	46949	957	44184	283695;283696;283697;283698	380479;380480;380481;380482;380483;380484;380485;380486	380479			8	
SNDELLLPHMK	1	Unmodified	1295.6544	0.65437195	2791	Q2KHR3	QSER1	Glutamine and serine-rich protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.187	50.66	3	0.050762	43692	160511_QHF_FH_JSI11i_2	25.234	15.802			1.3464	1.3418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3464	1.3418	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30631000	13187000	17444000	0	0	0	0	0	0	30631000	13187000	17444000	0	0	0	46950	2791	44185	283699	380487	380487			1	
SNDIDLEGFDSVVSSTEK	1	Unmodified	1940.8851	0.88509599	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			81.099	80.245	2	2.4488E-11	72831	160511_QHF_FH_JSI10i_1	113.72	105.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10616000	0	10616000	10616000	0	10616000	0	0	0	0	0	0	0	0	0	46951	3982	44186	283700;283701	380488;380489	380488			2	
SNDLAVLDASNQISVYK	1	Unmodified	1835.9265	0.92650729	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	75.284	74.749	2	4.6069E-16	68061	160511_QHF_FH_JSI12i_1	198.16	173.78			0.98665	0.97906	17.916	7	5	Median	0.90767	0.72968	19.836	2	1	Median	0.84305	0.97906	NaN	1	0	Median	1.0614	1.0051	9.602	2	2	Median	0.95779	1.0076	2.782	2	2	Median	390700000	193930000	196770000	91649000	46609000	45040000	69967000	34997000	34970000	128460000	61350000	67107000	100630000	50976000	49651000	46952	648	44187	283702;283703;283704;283705;283706;283707;283708	380490;380491;380492;380493;380494;380495;380496;380497;380498	380493			9	
SNDPMNQGR	0	Unmodified	1017.4298	0.42979174	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			7.8909	7.4302	2	0.012507	5330	160511_QHF_FH_JSI10i_1	47.574	37.869			1.0942	1.06	4.6282	2	0	Median	1.2409	1.0258	NaN	1	0	Median	0.96485	1.0952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58396000	29145000	29252000	27200000	12876000	14324000	31197000	16269000	14928000	0	0	0	0	0	0	46953	3378	44188	283709;283710	380499	380499			1	
SNDPVATAFAEMLK	1	Unmodified	1492.7232	0.7231798	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									2	1		98.22	98.118	2	0.00026789	86098	160511_QHF_FH_JSI11i_2	104.17	78.056			1.0862	1.1839	13.735	3	3	Median	NaN	NaN	NaN	0	0	Median	1.088	1.2885	11.967	2	2	Median	1.0862	1.0683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	102460000	48571000	53890000	0	0	0	60287000	29093000	31194000	42174000	19477000	22696000	0	0	0	46954	5130	44189	283711;283712;283713	380500;380501;380502	380501			3	
SNDSTEQNLSDGTPMPDSYPTTPSSTDAATSESK	1	Unmodified	3517.4798	0.47984039	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		55.973	55.32	3	6.8724E-24	49919	160511_QHF_FH_JSI10i_1	103.31	102.54			0.96288	1.0249	14.219	3	2	Plateau	0.96288	0.79384	NaN	1	1	Median	0.84584	1.0051	NaN	1	1	Median	1.0485	1.0249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147420000	93098000	54326000	38368000	26183000	12185000	53522000	38350000	15173000	55534000	28566000	26968000	0	0	0	46955	3290	44190	283714;283715;283716	380503;380504;380505	380504			3	
SNEDQSMGNWQIK	1	Unmodified	1535.6675	0.66745583	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.68	8	2				1	3			2	4	3	5	47.493	43.624	2;3	1.935E-200	38847	160511_QHF_FH_JSI9i_1	326.62	301.85			1.0072	1.049	7.5001	12	0	Median	1.2068	0.9871	7.0454	2	0	Median	0.91084	1.0847	7.6378	3	0	Median	1.0643	1.0409	10.578	3	0	Median	0.99644	1.0609	6.1846	4	0	Median	8482700000	4029800000	4452900000	1538900000	694660000	844220000	2020000000	1046300000	973720000	2262100000	1013200000	1248900000	2661700000	1275600000	1386000000	46956	791	44191	283717;283718;283719;283720;283721;283722;283723;283724;283725;283726;283727;283728;283729;283730	380506;380507;380508;380509;380510;380511;380512;380513;380514;380515;380516;380517;380518;380519;380520;380521;380522;380523;380524;380525;380526;380527;380528;380529;380530	380526			25	
SNEDQSMGNWQIK	1	Oxidation (M)	1551.6624	0.66237045	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.45	5.9	7					3	1			2	3	2	4	32.991	28.964	2	8.4187E-17	25760	160511_QHF_FH_JSI12i_1	216.91	201.34			1.0961	1.1026	18.915	10	5	Median	1.2088	0.98026	26.302	2	1	Median	1.1197	1.3258	33.134	2	1	Median	1.2117	1.1721	8.5463	2	1	Median	1.106	1.1631	9.9413	4	2	Linear	798930000	356260000	442670000	99141000	48145000	50995000	137090000	51123000	85972000	149710000	56083000	93632000	412980000	200910000	212070000	46957	791	44191	283731;283732;283733;283734;283735;283736;283737;283738;283739;283740;283741	380531;380532;380533;380534;380535;380536;380537;380538;380539;380540;380541;380542;380543;380544;380545	380532		306	15	
SNEDQSMGNWQIKR	1	Acetyl (K)	1733.7791	0.77913155	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	58.504	47.842	2	9.2106E-10	26358	160513_QHF_FH_JSI10Kac_4	121.08	105.54			0.77249	0.87884	20.71	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85735	1.0174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69603	0.75912	NaN	1	0	Median	5625800	3250500	2375300	0	0	0	3578300	2059700	1518600	0	0	0	2047500	1190800	856690	46958	791	44192	283742;283743	380546;380547;380548	380546	417		3	
SNEDVNSSELDEEYLIELEK	1	Unmodified	2354.0649	0.064910845	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	83.8	83.406	2;3	1.6734E-80	74132	160511_QHF_FH_JSI9i_1	200.71	180.05			0.87237	0.84757	12.733	6	0	Median	1.2792	1.0286	NaN	1	0	Median	0.67765	0.78334	10.695	2	0	Median	0.87237	0.83215	3.0456	2	0	Median	0.9608	0.98214	NaN	1	0	Median	167910000	88979000	78929000	20015000	7232800	12783000	52374000	30943000	21430000	64083000	36773000	27310000	31436000	14029000	17407000	46959	4293	44193	283744;283745;283746;283747;283748;283749;283750	380549;380550;380551;380552;380553;380554;380555;380556;380557	380557			9	
SNEEGSEEKGPEVR	1	Acetyl (K)	1587.7013	0.70125838	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		24.108	16.545	2	0.02902	10511	160513_QHF_FH_JSI11Kac_3	54.7	48.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1393300	1393300	0	0	0	0	0	0	0	1393300	1393300	0	0	0	0	46960	1385	44194	283751	380558	380558			1	
SNEILTAIIQGMR	0	Unmodified	1444.7708	0.77079869	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.56		8	7						9	7	5	6	6	97.327	94.843	2;3	4.9373E-99	86350	160511_QHF_FH_JSI12i_2	257.8	203.19			1.0261	1.01	26.48	20	2	Median	1.1132	0.94829	17.286	4	1	Median	0.73949	0.91928	41.539	5	1	Median	1.0607	1.0759	15.319	6	0	Median	0.91696	1.0016	28.97	5	0	Median	3388900000	1615400000	1773500000	417750000	204410000	213340000	704120000	362610000	341510000	1253200000	618050000	635100000	1013900000	430330000	583520000	46961	2585	44195	283752;283753;283754;283755;283756;283757;283758;283759;283760;283761;283762;283763;283764;283765;283766;283767;283768;283769;283770;283771;283772;283773;283774;283775	380559;380560;380561;380562;380563;380564;380565;380566;380567;380568;380569;380570;380571;380572;380573;380574;380575;380576;380577;380578;380579;380580;380581;380582;380583;380584;380585;380586;380587;380588;380589;380590;380591;380592;380593;380594;380595;380596	380565			37	
SNEILTAIIQGMR	0	Oxidation (M)	1460.7657	0.76571331	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	81.926	71.502	2	0.003729	34940	160513_QHF_FH_JSI12Kac_5	60.434	44.18			0.71701	0.78544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71701	0.78544	NaN	1	0	Median	1102900	505700	597240	0	0	0	0	0	0	0	0	0	1102900	505700	597240	46962	2585	44195	283776	380597	380597		2030	1	
SNEILTAIIQGMRK	1	Unmodified	1572.8658	0.86576171	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			91.567	90.491	3	0.041773	74115	160511_QHF_FH_JSI9i_3	29.355	17.915			1.1528	1.1472	112.39	2	2	Median	0.60305	0.51822	NaN	1	1	Median	2.2039	2.5396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17853000	8249300	9603700	6766300	4427900	2338400	11087000	3821400	7265300	0	0	0	0	0	0	46963	2585	44196	283777;283778	380598;380599	380599			2	
SNELFTTFR	0	Unmodified	1113.5455	0.54547343	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	56.252	55.547	2	0.0002432	47689	160511_QHF_FH_JSI12i_2	101.46	74.206			0.7958	0.8773	4.3918	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75431	0.90497	NaN	1	0	Median	0.83958	0.85047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132760000	71144000	61617000	0	0	0	53029000	31389000	21640000	79731000	39755000	39977000	0	0	0	46964	5011	44197	283779;283780;283781;283782	380600;380601;380602;380603	380600			4	
SNELGDVGVHCVLQGLQTPSCK	1	Unmodified	2397.1417	0.14167857	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				74.241	73.427	3	0.0014104	64756	160511_QHF_FH_JSI9i_2	45.363	38.031			1.4663	1.2406	NaN	1	1	Median	1.4663	1.2406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39536000	15480000	24056000	39536000	15480000	24056000	0	0	0	0	0	0	0	0	0	46965	1029	44198	283783	380604	380604			1	
SNELWTEIK	1	Unmodified	1118.5608	0.56078914	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6	1	4	1				1	2		3	2	2	2	56.873	54.383	2	3.4271E-08	46880	160511_QHF_FH_JSI11i_2	147.75	104.67			0.99165	0.98263	46.865	6	1	Median	0.99058	0.87122	NaN	1	0	Median	0.75409	0.92003	NaN	1	0	Median	0.6513	0.63827	70.328	2	1	Median	1.2035	1.3279	25.354	2	0	Median	917770000	555620000	362150000	127070000	64747000	62318000	125770000	71758000	54009000	491090000	335400000	155680000	173850000	83707000	90143000	46966	1844	44199	283784;283785;283786;283787;283788;283789;283790;283791;283792	380605;380606;380607;380608;380609;380610;380611;380612;380613;380614	380611			10	
SNESVDIQDQEEK	1	Unmodified	1519.6638	0.66381024	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.689	21.162	2	1.0852E-40	18285	160511_QHF_FH_JSI11i_1	198.55	187.38			0.86852	0.8047	15.067	4	0	Median	1.0386	0.85594	NaN	1	0	Median	0.63582	0.75652	NaN	1	0	Median	1.065	1.0344	NaN	1	0	Median	0.72629	0.748	NaN	1	0	Median	175710000	91581000	84130000	43752000	21026000	22726000	37325000	19876000	17449000	42784000	21867000	20917000	51850000	28812000	23038000	46967	2977	44200	283793;283794;283795;283796	380615;380616;380617;380618;380619;380620;380621	380616			6	
SNEVETSATNGQPDQQAAPK	1	Acetyl (Protein N-term)	2112.956	0.95596952	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.535	31.936	2	1.0282E-21	27972	160511_QHF_FH_JSI9i_1	194.85	186.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58244000	30643000	27600000	12580000	12580000	0	11888000	11888000	0	16395000	0	16395000	17381000	6175500	11205000	46968	2137	44201	283797;283798;283799;283800;283801	380622;380623;380624;380625;380626	380626			5	
SNEVVAVPTNGTVNNVAQEPVNTLGDISGNK	1	Unmodified	3136.5636	0.56364927	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		81.599	81.242	3	2.0967E-10	73997	160511_QHF_FH_JSI11i_1	68.733	63.972			0.91328	0.87683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91328	0.87683	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11631000	6619700	5011100	0	0	0	0	0	0	11631000	6619700	5011100	0	0	0	46969	5646	44202	283802	380627	380627			1	
SNEYQLIDCAQYFLDK	1	Unmodified	2005.9091	0.90914267	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	99.443	99.296	3	0.00095868	90096	160511_QHF_FH_JSI11i_1	56.215	46.557			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46970	2048	44203	283803;283804	380628;380629	380628			2	
SNFAEALAAHK	1	Unmodified	1157.5829	0.58292157	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.53		8	8					4	8	7	7	7	7	40.646	36.047	2;3	1.1962E-29	31544	160511_QHF_FH_JSI10i_2	189.58	167.44			0.96236	0.96872	33.373	28	3	Median	1.2436	1.0549	14.018	7	0	Median	0.7088	0.8686	24.713	7	1	Median	0.98939	0.97266	13.781	7	0	Median	0.91058	0.927	61.406	7	2	Median	27355000000	11997000000	15358000000	3840600000	1528600000	2312000000	5905600000	3031900000	2873700000	9324800000	3905600000	5419200000	8283900000	3530600000	4753300000	46971	867	44204	283805;283806;283807;283808;283809;283810;283811;283812;283813;283814;283815;283816;283817;283818;283819;283820;283821;283822;283823;283824;283825;283826;283827;283828;283829;283830;283831;283832	380630;380631;380632;380633;380634;380635;380636;380637;380638;380639;380640;380641;380642;380643;380644;380645;380646;380647;380648;380649;380650;380651;380652;380653;380654;380655;380656;380657;380658;380659;380660;380661;380662;380663;380664;380665;380666;380667;380668;380669;380670;380671;380672;380673;380674;380675;380676;380677;380678;380679;380680;380681;380682;380683	380666			54	
SNFEPFFMMIATPAPHSPWTAAPQYQK	1	Unmodified	3093.4517	0.45171975	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	1	3	3	95.308	87.451	3;4	7.3224E-135	50341	160513_QHF_FH_JSI10Kac_6	248.95	235.22			1.0353	1.0742	12.247	9	3	Median	1.364	1.1713	25.123	2	0	Median	0.89363	1.0742	NaN	1	0	Median	1.0353	0.98846	13.377	3	1	Median	1.1042	1.1597	6.5207	3	2	Plateau	1622200000	854120000	768070000	263460000	145170000	118290000	301200000	150920000	150280000	660900000	370580000	290320000	396630000	187460000	209170000	46972	1081	44205	283833;283834;283835;283836;283837;283838;283839;283840;283841	380684;380685;380686;380687;380688;380689;380690;380691;380692;380693;380694;380695;380696;380697	380696			14	
SNFEPFFMMIATPAPHSPWTAAPQYQK	1	Oxidation (M)	3109.4466	0.44663437	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									4			1	3	91.674	82.252	3;4	1.4435E-15	43998	160513_QHF_FH_JSI12Kac_6	142.65	131.13			1.0673	1.0766	48.738	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3574	1.3244	NaN	1	1	Median	0.83918	0.87519	57.878	3	3	Median	97981000	50066000	47915000	0	0	0	0	0	0	23565000	17531000	6034500	74416000	32536000	41880000	46973	1081	44205	283842;283843;283844;283845	380698;380699;380700;380701	380699		726;727	4	
SNFFAIIR	0	Unmodified	966.5287	0.52870115	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			76.245	69.995	2	0.0010891	38190	160513_QHF_FH_JSI10Kac_6	102.51	67.621			0.89345	1.0681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89345	1.0681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32752000	15764000	16988000	0	0	0	32752000	15764000	16988000	0	0	0	0	0	0	46974	3811	44206	283846;283847	380702;380703	380703			2	
SNFFYAIQFVLSDEFSHLRPEQR	0	Unmodified	2829.3875	0.38746323	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			97.565	90.152	4	1.1561E-38	53397	160513_QHF_FH_JSI10Kac_6	173.65	161.57			0.80089	0.80591	13.361	2	0	Median	0.84926	0.73326	NaN	1	0	Median	0.75527	0.88577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1389600000	739220000	650350000	365940000	203620000	162320000	1023600000	535600000	488040000	0	0	0	0	0	0	46975	5479	44207	283848;283849	380704;380705	380705			1	
SNFGYNIPLK	1	Unmodified	1151.5975	0.597509	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.42	5	4	5				1	4	3	5	7	5	5	63.976	59.626	2	2.9201E-10	52483	160511_QHF_FH_JSI9i_2	154.84	124.27			0.91729	0.94168	17.689	21	4	Median	1.0791	0.91936	13.855	5	0	Median	0.82412	0.98983	27.529	6	2	Median	0.88327	0.87414	5.0591	5	1	Median	0.93429	0.99713	7.2741	5	1	Median	7013700000	3591700000	3422000000	1054300000	516530000	537750000	1983700000	1033600000	950080000	2132500000	1086800000	1045800000	1843200000	954840000	888400000	46976	1266	44208	283850;283851;283852;283853;283854;283855;283856;283857;283858;283859;283860;283861;283862;283863;283864;283865;283866;283867;283868;283869;283870;283871	380706;380707;380708;380709;380710;380711;380712;380713;380714;380715;380716;380717;380718;380719;380720;380721;380722;380723;380724;380725;380726;380727;380728;380729;380730;380731;380732;380733;380734;380735;380736;380737	380726			32	
SNFKPSLLAQK	2	Unmodified	1231.6925	0.69247202	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	37.305	36.442	2;3	2.0878E-06	30481	160511_QHF_FH_JSI10i_3	120.06	107.83			1.0295	1.1572	30.994	7	0	Median	1.5479	1.2487	6.4559	2	0	Median	1.0681	1.2338	9.0669	2	0	Median	0.67903	0.64984	1.4525	2	0	Median	0.93361	0.92534	NaN	1	0	Median	1878400000	900260000	978140000	750960000	315880000	435080000	517680000	293780000	223900000	579580000	272990000	306590000	30183000	17608000	12575000	46977	4017	44209	283872;283873;283874;283875;283876;283877;283878	380738;380739;380740;380741;380742;380743;380744;380745;380746;380747;380748;380749;380750;380751	380744			14	
SNFLNCYVSGFHPSDIEVDLLK	1	Unmodified	2553.221	0.22097475	1963	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.2	101.21	3	5.7112E-86	87816	160511_QHF_FH_JSI12i_3	241.2	223.83			1.1506	1.1833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1506	1.1833	NaN	1	0	Median	436360000	194210000	242140000	0	0	0	0	0	0	0	0	0	436360000	194210000	242140000	46978	1963	44210	283879	380752	380752			1	
SNFLVLCYLHDVK	1	Unmodified	1606.8177	0.81774888	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	84.338	78.818	3	3.5081E-17	39786	160513_QHF_FH_JSI12Kac_6	128.06	105.52			1.0582	1.0817	30.805	6	0	Median	0.99482	0.83359	NaN	1	0	Median	0.9319	1.1233	NaN	1	0	Median	0.8487	0.79908	37.482	2	0	Median	1.3283	1.3588	1.7538	2	0	Median	813970000	370710000	443270000	175900000	76358000	99539000	290530000	135700000	154830000	171970000	102040000	69934000	175570000	56607000	118960000	46979	1615	44211	283880;283881;283882;283883;283884;283885	380753;380754;380755;380756;380757;380758;380759;380760;380761;380762	380760			10	
SNFSILQLHEFK	1	Unmodified	1461.7616	0.76161421	4139	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			72.106	70.975	3	0.011759	62997	160511_QHF_FH_JSI10i_2	43.405	31.713			1.6313	1.6124	4.4839	2	2	Median	2.0437	1.6643	NaN	1	1	Median	1.302	1.5621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32925000	12160000	20765000	17866000	6053400	11812000	15059000	6106600	8952600	0	0	0	0	0	0	46980	4139	44212	283886;283887	380763;380764	380764			2	
SNFSLAILNVGAPAAGMNAAVR	0	Unmodified	2143.1208	0.1208072	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.29	6.69		2	2						3	2	2	2	1	97.083	94.514	2;3	2.2673E-244	47315	160513_QHF_FH_JSI10Kac_6	359.86	313.99			0.83753	0.91656	18.444	5	2	Median	1.4289	1.1829	NaN	1	0	Median	0.68202	0.83463	17.494	2	2	Median	0.96613	0.91656	NaN	1	0	Median	0.83753	0.78393	NaN	1	0	Median	259270000	129630000	129640000	45680000	15130000	30550000	116850000	66561000	50289000	64705000	28936000	35769000	32035000	19001000	13033000	46981	1129	44213	283888;283889;283890;283891;283892;283893;283894	380765;380766;380767;380768;380769;380770	380770			6	
SNFSLEDFQHSK	1	Unmodified	1437.6525	0.6524577	1884	P56937	HSD17B7	3-keto-steroid reductase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	48.774	48.079	3	5.7784E-05	42352	160511_QHF_FH_JSI11i_3	92.039	83.218			1.3012	1.2404	15.055	6	1	Median	1.5306	1.3131	NaN	1	0	Median	0.89715	1.093	NaN	1	0	Median	1.3012	1.2686	11.241	2	1	Median	1.258	1.3252	27.134	2	0	Median	305340000	127870000	177460000	35683000	12768000	22915000	58127000	24149000	33978000	103040000	43718000	59318000	108490000	47240000	61252000	46982	1884	44214	283895;283896;283897;283898;283899;283900	380771;380772	380771			2	
SNFSNSADDIK	1	Unmodified	1196.5309	0.53094558	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	2	3	25.854	21.966	2	1.8466E-30	19111	160511_QHF_FH_JSI10i_1	228.98	213.83			1.133	1.1993	33.145	7	0	Median	0.85686	0.70038	NaN	1	0	Median	0.69559	0.82795	23.352	2	0	Median	1.5014	1.476	8.9228	2	0	Median	1.228	1.2886	10.157	2	0	Median	1637600000	746660000	890920000	310320000	155230000	155090000	291630000	165270000	126360000	465840000	184470000	281370000	569800000	241700000	328100000	46983	1572	44215	283901;283902;283903;283904;283905;283906;283907;283908	380773;380774;380775;380776;380777;380778;380779;380780;380781;380782;380783;380784;380785	380778			13	
SNFVLHNK	1	Unmodified	957.50321	0.50321468	2548	Q14592	ZNF460	Zinc finger protein 460	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	14.425	14.498	3	0.016055	11267	160511_QHF_FH_JSI12i_3	41.448	21.166			1.6362	1.5547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6362	1.5547	NaN	1	1	Median	32384000	14225000	18159000	0	0	0	0	0	0	0	0	0	32384000	14225000	18159000	46984	2548	44216	283909	380786	380786			1	
SNGDNVVVGDK	1	Unmodified	1102.5255	0.52546627	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	13.702	13.44	2	0.0094915	10975	160511_QHF_FH_JSI10i_1	58.511	33.617			1.0644	1.0042	4.9408	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86458	1.0002	NaN	1	0	Median	1.0813	1.0441	NaN	1	0	Median	1.0644	1.1038	NaN	1	0	Median	103480000	51795000	51685000	0	0	0	38995000	19021000	19973000	35305000	17116000	18189000	29180000	15658000	13522000	46985	2547	44217	283910;283911;283912	380787	380787			1	
SNGEFWDPGR	0	Unmodified	1163.4996	0.49958587	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	43.769	42.826	2	0.0012313	36530	160511_QHF_FH_JSI12i_2	67.113	63.857			1.1976	1.195	12.827	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75209	0.92982	NaN	1	0	Median	1.1976	1.195	NaN	1	0	Median	0.96598	1.1042	NaN	1	0	Median	118770000	56615000	62154000	0	0	0	30893000	15017000	15876000	52535000	22721000	29814000	35341000	18877000	16464000	46986	3173	44218	283913;283914;283915	380788;380789	380788			1	
SNGREQDLPLAEAVRPK	1	Unmodified	1878.9912	0.99117323	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			41.985	40.465	4	0.039688	33745	160511_QHF_FH_JSI10i_3	26.808	15.04			0.84464	0.96591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84464	0.96591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35362000	21163000	14199000	0	0	0	35362000	21163000	14199000	0	0	0	0	0	0	46987	3961	44219	283916	380790	380790			1	
SNGRPNETDIK	1	Unmodified	1229.6	0.60002819	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.9516	7.9516	2	0.030127	5660	160511_QHF_FH_JSI11i_3	75.294	24.687			0.95767	0.89674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95767	0.89674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27469000	18091000	9378200	0	0	0	0	0	0	27469000	18091000	9378200	0	0	0	46988	1273	44220	283917	380791	380791			1	
SNGYEEAYSVFK	1	Unmodified	1392.6198	0.61976058	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		2	1	57.037	56.228	2	3.5275E-06	48630	160511_QHF_FH_JSI11i_2	100.55	85.293			0.81884	0.61826	28.727	4	3	Linear	1.078	0.91487	38.168	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63976	0.62067	NaN	1	1	Median	0.78823	0.84115	NaN	1	1	Median	382590000	201210000	181380000	126130000	63281000	62845000	0	0	0	163400000	88425000	74974000	93065000	49500000	43565000	46989	1553	44221	283918;283919;283920;283921;283922	380792;380793;380794;380795;380796	380796			5	
SNGYEEAYSVFKK	2	Unmodified	1520.7147	0.7147236	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							1	2	3	3	50	49.13	2;3	9.2843E-07	42316	160511_QHF_FH_JSI11i_2	94.191	58.232			1.0952	1.2791	25.812	6	0	Median	1.8568	1.5568	NaN	1	0	Median	1.0474	1.3051	NaN	1	0	Median	0.94864	0.96703	39.041	2	0	Median	1.0952	1.1787	12.084	2	0	Median	589060000	280380000	308680000	73439000	31441000	41998000	108770000	44595000	64179000	183620000	86045000	97578000	223220000	118290000	104920000	46990	1553	44222	283923;283924;283925;283926;283927;283928;283929;283930;283931	380797;380798;380799;380800;380801;380802;380803;380804	380802			8	
SNHPEDLQAANR	0	Unmodified	1350.6276	0.62763993	5355	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.02	9.3664	2	0.02099	6999	160511_QHF_FH_JSI12i_2	43.512	22.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46991	5355	44223	283932	380805	380805			1	
SNIAFMGTLVR	0	Unmodified	1207.6383	0.63832796	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.8	4.92			1					3	1	1	3		1	75.882	68.993	2	0.0026417	37915	160513_QHF_FH_JSI10Kac_6	69.451	51.139			1.1515	1.145	63.756	4	2	Median	1.6755	1.3989	NaN	1	1	Median	0.67289	0.78388	25.256	2	1	Median	NaN	NaN	NaN	0	0	Median	2.9102	2.8989	NaN	1	0	Median	110240000	49075000	61165000	2785500	953220	1832200	46410000	31385000	15025000	0	0	0	61044000	16736000	44308000	46992	2142	44224	283933;283934;283935;283936;283937	380806;380807;380808;380809;380810	380810			4	
SNIDALLSR	0	Unmodified	987.53491	0.53490874	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	50.288	49.307	2	0.0027517	42495	160511_QHF_FH_JSI11i_2	63.32	41.575			0.97424	0.95106	12.662	4	1	Median	1.0628	0.91882	NaN	1	0	Median	0.97322	1.1879	NaN	1	1	Median	0.97527	0.98443	NaN	1	0	Median	0.81283	0.89897	NaN	1	0	Median	348320000	190100000	158220000	58556000	26438000	32118000	76382000	44441000	31941000	112310000	56949000	55362000	101080000	62273000	38802000	46993	5375	44225	283938;283939;283940;283941;283942	380811;380812;380813;380814;380815	380813			5	
SNIHCNTIAPNAGSR	0	Unmodified	1610.7583	0.75833653	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	3	1		16.392	15.644	2;3	2.1969E-07	12667	160511_QHF_FH_JSI10i_3	114.54	99.151			0.8275	1.0012	24.517	5	1	Median	1.1959	1.0366	NaN	1	0	Median	0.93566	1.0998	22.679	3	0	Plateau	0.62434	0.64304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	202350000	109040000	93308000	41722000	16077000	25645000	139270000	76230000	63039000	21357000	16732000	4625000	0	0	0	46994	1747	44226	283943;283944;283945;283946;283947	380816;380817;380818;380819;380820;380821;380822;380823;380824;380825	380817			10	
SNIHSSVMASPGGLSAVR	0	Unmodified	1768.889	0.88901635	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			44.029	42.471	3	3.9305E-05	35414	160511_QHF_FH_JSI10i_3	71.269	46.675			1.2206	1.0662	1.6392	3	2	Plateau	1.2676	1.0662	NaN	1	0	Median	0.91967	1.042	1.3691	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76605000	36317000	40288000	19171000	9270700	9900800	57433000	27046000	30388000	0	0	0	0	0	0	46995	4929	44227	283948;283949;283950;283951	380826;380827;380828;380829	380827			4	
SNILDSICFLLGISNLSQVR	0	Unmodified	2248.1886	0.18855241	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			101.34	95.622	2;3	4.8821E-103	56473	160513_QHF_FH_JSI10Kac_6	285.31	253.49			0.94672	1.1183	35.586	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94672	1.1183	35.586	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204460000	105820000	98638000	0	0	0	204460000	105820000	98638000	0	0	0	0	0	0	46996	679	44228	283952;283953	380830;380831	380831			2	
SNILIYMTGHGGNGFLK	1	Unmodified	1820.9243	0.92433922	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	81.587	72.209	3	9.4288E-06	38291	160513_QHF_FH_JSI12Kac_6	97.095	65.862			0.91672	0.92488	47.719	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68658	0.66	NaN	1	0	Median	1.224	1.2961	NaN	1	0	Median	149960000	77427000	72536000	0	0	0	0	0	0	83393000	44703000	38690000	66570000	32723000	33846000	46997	3867	44229	283954;283955	380832;380833	380833			2	
SNILIYMTGHGGNGFLK	1	Oxidation (M)	1836.9193	0.91925384	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				70.57	61.948	3	5.6817E-05	32903	160513_QHF_FH_JSI9Kac_6	76.378	54.164			1.1376	0.97084	NaN	1	0	Median	1.1376	0.97084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21520000	9765000	11755000	21520000	9765000	11755000	0	0	0	0	0	0	0	0	0	46998	3867	44229	283956	380834;380835	380834		2317	2	
SNILLLGPTGSGK	1	Unmodified	1255.7136	0.71360139	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.53	6.29	1	7					5	4		3	5	4	5	65.625	60.176	2	2.3327E-06	52074	160511_QHF_FH_JSI11i_2	121.01	100.56			1.005	0.98935	20.201	15	11	Median	1.0779	0.98119	9.92	3	3	Plateau	0.6721	0.79383	17.282	4	3	Median	1.0581	1.0579	12.16	4	2	Median	1.0418	1.1645	17.451	4	3	Median	534780000	279280000	255500000	101960000	48400000	53560000	86753000	51697000	35056000	211750000	109090000	102660000	134310000	70088000	64223000	46999	598	44230	283957;283958;283959;283960;283961;283962;283963;283964;283965;283966;283967;283968;283969;283970;283971;283972;283973	380836;380837;380838;380839;380840;380841;380842;380843;380844;380845;380846;380847;380848;380849;380850;380851;380852;380853	380845			18	
SNILSDNPDFSDEADIIK	1	Unmodified	1991.9324	0.93238053	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			80.105	79.946	2	2.7599E-11	72502	160511_QHF_FH_JSI10i_1	169.4	133.11			0.32714	0.37012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.32714	0.37012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30879000	25226000	5653700	0	0	0	30879000	25226000	5653700	0	0	0	0	0	0	47000	560	44231	283974	380854	380854			1	
SNILTLMYQCMQDK	1	Unmodified	1743.7994	0.79939798	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	1	1	4	1	97.852	95.126	2;3	1.089E-29	89435	160511_QHF_FH_JSI11i_3	185.59	153.59			1.1057	0.98599	14.418	7	4	Median	1.2257	0.97369	NaN	1	1	Median	1.1057	1.2666	NaN	1	0	Median	1.0164	0.96672	6.1961	4	2	Median	1.2416	1.3145	NaN	1	1	Median	231240000	106310000	124920000	30688000	13031000	17657000	46922000	21983000	24939000	135050000	65506000	69540000	18584000	5794600	12789000	47001	3914	44232	283975;283976;283977;283978;283979;283980;283981	380855;380856;380857;380858;380859;380860;380861;380862;380863;380864	380856			10	
SNILVFK	1	Unmodified	819.48544	0.48543935	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.207	50.68	2	0.017489	43817	160511_QHF_FH_JSI11i_2	62.659	47.219			8.631	9.006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.631	9.006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	713030000	60185000	652840000	0	0	0	0	0	0	713030000	60185000	652840000	0	0	0	47002	2291	44233	283982	380865	380865			1	
SNIWVAGDAACFYDIK	1	Unmodified	1828.8454	0.8454202	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	88.147	87.498	2	3.8264E-05	75578	160511_QHF_FH_JSI12i_2	97.551	84.351			1.1094	1.2625	37.975	4	3	Median	NaN	NaN	NaN	0	0	Median	0.91839	1.0838	NaN	1	1	Median	1.0343	1.0408	59.054	2	2	Median	1.34	1.4707	NaN	1	0	Median	71440000	33827000	37613000	0	0	0	17340000	9440900	7899100	39320000	18045000	21275000	14779000	6340500	8438900	47003	736	44234	283983;283984;283985;283986;283987	380866;380867;380868;380869;380870;380871	380867			6	
SNKPIILR	1	Unmodified	939.58655	0.58655038	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			19.298	18.133	3	0.0080745	14893	160511_QHF_FH_JSI10i_3	42.109	25.906			0.74737	0.73252	42.178	2	1	Median	0.67155	0.54362	NaN	1	1	Median	0.83174	0.98706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138450000	80625000	57821000	82695000	48614000	34081000	55751000	32011000	23740000	0	0	0	0	0	0	47004	1085	44235	283988;283989	380872;380873;380874	380872			3	
SNKPIILR	1	Acetyl (K)	981.59712	0.59711507	1085	P15924	DSP	Desmoplakin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		52.159	41.444	2	0.017901	23028	160513_QHF_FH_JSI11Kac_5	69.825	51.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6057500	6057500	0	0	0	0	0	0	0	6057500	6057500	0	0	0	0	47005	1085	44235	283990	380875	380875	943		1	
SNKYLTVNK	2	Acetyl (K)	1107.5924	0.59242362	2549;2547;2546	Q14571;Q14573;Q14643	ITPR2;ITPR3;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1	no	no	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		39.539	29.742	2	0.0032468	18111	160513_QHF_FH_JSI11Kac_4	80.231	46.435			0.53596	0.57359	114.36	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1034	1.2877	NaN	1	0	Median	0.26033	0.2555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14987000	11456000	3530800	0	0	0	1721200	727800	993360	13266000	10728000	2537400	0	0	0	47006	2546;2547;2549	44236	283991;283992	380876;380877	380877	2532		2	
SNLAYDIVQLPTGLTGIK	1	Unmodified	1902.0462	0.046228496	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								2	4	4	4	101.24	101.14	2;3	1.0395E-183	88811	160511_QHF_FH_JSI11i_2	316.12	299.58			0.97836	1.0063	17.416	14	2	Median	1.0476	0.88069	17.276	2	0	Median	0.78598	0.95978	8.3798	4	2	Median	1.1079	1.1185	18.524	4	0	Median	1.0394	1.1198	16.375	4	0	Median	5331600000	2680400000	2651300000	492760000	223170000	269590000	1632400000	917520000	714880000	1712100000	817880000	894190000	1494400000	721810000	772610000	47007	1417	44237	283993;283994;283995;283996;283997;283998;283999;284000;284001;284002;284003;284004;284005;284006	380878;380879;380880;380881;380882;380883;380884;380885;380886;380887;380888;380889;380890;380891;380892;380893;380894;380895;380896;380897;380898;380899	380896			22	
SNLDTEVTTAK	1	Unmodified	1177.5826	0.5826468	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	23.996	23.45	2	1.2589E-05	20137	160511_QHF_FH_JSI9i_1	128.01	100.88			1.5616	1.3652	18.454	4	4	Median	1.6904	1.3802	NaN	1	1	Median	1.0203	1.2027	NaN	1	1	Median	1.4426	1.3503	NaN	1	1	Median	1.7968	1.8548	NaN	1	1	Median	147680000	56535000	91146000	34455000	12954000	21501000	36289000	16829000	19461000	24551000	7704300	16846000	52386000	19048000	33338000	47008	4936	44238	284007;284008;284009;284010;284011	380900;380901;380902;380903;380904	380904			5	
SNLELFK	1	Unmodified	849.45962	0.45961853	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	2	1									1	1	1	47.736	46.991	2	0.030187	42294	160511_QHF_FH_JSI10i_1	54.205	36.357			0.73051	0.69635	32.483	3	3	Median	NaN	NaN	NaN	0	0	Median	0.51243	0.59767	NaN	1	1	Median	0.73051	0.69635	NaN	1	1	Median	0.99288	1.1146	NaN	1	1	Median	234650000	102400000	132250000	0	0	0	48006000	24186000	23820000	37985000	23407000	14578000	148660000	54807000	93852000	47009	238	44239	284012;284013;284014	380905;380906;380907	380907			3	
SNLENIDFK	1	Unmodified	1078.5295	0.52948901	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	2	3	49.637	45.111	2	1.3572E-06	40774	160511_QHF_FH_JSI11i_1	132.88	90.006			1.1787	1.1322	14.53	8	0	Median	1.2292	1.0054	NaN	1	0	Median	0.87671	1.0286	0.25123	2	0	Median	1.2598	1.236	16.424	2	0	Median	1.2339	1.3216	10.75	3	0	Median	949020000	406560000	542450000	128420000	56407000	72016000	253430000	109040000	144390000	266990000	118700000	148290000	300160000	122410000	177760000	47010	1359	44240	284015;284016;284017;284018;284019;284020;284021;284022	380908;380909;380910;380911;380912;380913;380914;380915;380916;380917;380918;380919	380909			11	
SNLFEDATSALVTGQSYENMVTEIMSMGYER	0	Unmodified	3472.5473	0.54727221	1831	P54727	RAD23B	UV excision repair protein RAD23 homolog B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.55	103.45	3	1.2498E-15	91225	160511_QHF_FH_JSI11i_2	91.942	89.365			0.83862	0.82849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83862	0.82849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33087000	18819000	14268000	0	0	0	0	0	0	33087000	18819000	14268000	0	0	0	47011	1831	44241	284023	380920	380920			0	
SNLGSVVLQLK	1	Unmodified	1156.6816	0.68157298	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	68.429	67.752	2	2.6181E-18	58569	160511_QHF_FH_JSI12i_3	164.64	126.34			0.95574	0.97442	12.245	8	0	Median	1.0904	0.91504	12.247	2	0	Median	0.82177	0.97574	14.526	2	0	Median	1.1205	1.0802	16.152	3	0	Plateau	1.05	1.0615	NaN	1	0	Median	1540800000	692650000	848140000	197350000	88778000	108570000	106790000	60594000	46195000	580400000	266680000	313720000	656240000	276600000	379650000	47012	300	44242	284024;284025;284026;284027;284028;284029;284030;284031;284032	380921;380922;380923;380924;380925;380926;380927;380928;380929	380929			5	
SNLHAMIK	1	Unmodified	912.48512	0.48512178	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	16.056	16.107	2	0.002314	12796	160511_QHF_FH_JSI12i_3	89.698	65.726			0.27441	0.27432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27441	0.27432	NaN	1	1	Median	158560000	118630000	39933000	0	0	0	0	0	0	0	0	0	158560000	118630000	39933000	47013	521	44243	284033	380930	380930			1	
SNLHAMIKAEESSK	2	Acetyl (K)	1585.777	0.77700628	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.928	38.239	3	0.013076	20842	160513_QHF_FH_JSI11Kac_6	48.899	34.212			0.16409	0.16032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16409	0.16032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6413800	5674500	739300	0	0	0	0	0	0	6413800	5674500	739300	0	0	0	47014	521	44244	284034	380931	380931	271		1	
SNLISGSVMYIEEK	1	Unmodified	1568.7756	0.7756093	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.12	74.261	2	1.089E-29	65168	160511_QHF_FH_JSI11i_2	185.59	160.16			1.0826	1.0638	8.8439	4	0	Median	1.1848	1.0241	NaN	1	0	Median	0.79841	0.97489	NaN	1	0	Median	1.0977	1.1051	NaN	1	0	Median	1.0678	1.193	NaN	1	0	Median	412840000	217230000	195610000	77604000	35120000	42484000	125250000	80414000	44835000	122650000	58154000	64495000	87339000	43542000	43797000	47015	5300	44245	284035;284036;284037;284038	380932;380933;380934;380935;380936	380935			5	
SNLIWNFK	1	Unmodified	1020.5393	0.53926584	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.67	0.471		1	2							1	1		1	67.938	67.05	2	0.0026135	59342	160511_QHF_FH_JSI9i_2	77.058	59.672			1.2404	1.3504	68.745	2	2	Median	NaN	NaN	NaN	0	0	Median	0.70552	0.83052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1808	2.1957	NaN	1	1	Median	73695000	28516000	45179000	0	0	0	16818000	8822000	7995800	0	0	0	56877000	19694000	37183000	47016	486	44246	284039;284040;284041	380937;380938;380939	380938			3	
SNLKPDGEHGGSTGTGSGAGSGGALEEEVR	1	Acetyl (Protein N-term)	2854.2965	0.29653555	3185	Q6ZRY4	RBPMS2	RNA-binding protein with multiple splicing 2	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	40.554	39.935	3	4.2324E-06	36245	160511_QHF_FH_JSI12i_1	55.884	52.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47017	3185	44247	284042	380940	380940			1	
SNLMDAISFVLGEK	1	Unmodified	1522.7701	0.77012999	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	0.3		1	9							2	3	3	2	102.56	102.5	2;3	1.5796E-135	91672	160511_QHF_FH_JSI11i_3	289.45	263.51			1.1189	1.0681	25.686	10	4	Median	1.1446	0.92637	2.5026	2	0	Median	0.84138	0.96175	34.29	3	1	Median	1.5987	1.4613	14.548	3	2	Median	1.0387	1.0681	1.8866	2	1	Median	1284800000	567800000	717020000	122440000	58248000	64190000	246890000	124290000	122590000	492160000	201320000	290840000	423340000	183940000	239400000	47018	2560	44248	284043;284044;284045;284046;284047;284048;284049;284050;284051;284052	380941;380942;380943;380944;380945;380946;380947;380948;380949;380950;380951;380952;380953;380954;380955	380941			15	
SNLNPNAK	1	Unmodified	856.44028	0.44028008	4341	Q9BPZ3	PAIP2	Polyadenylate-binding protein-interacting protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	7.6615	7.3721	2	0.0027255	5280	160511_QHF_FH_JSI12i_1	77.923	49.704			0.70909	0.80835	18.438	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70909	0.86577	12.61	2	0	Median	0.63147	0.60901	NaN	1	0	Median	0.78185	0.82513	NaN	1	0	Median	1893200000	1136600000	756630000	0	0	0	658160000	403140000	255010000	618940000	381550000	237390000	616090000	351850000	264230000	47019	4341	44249	284053;284054;284055;284056	380956;380957;380958;380959	380957			4	
SNLNSLDEQEGVK	1	Unmodified	1431.6842	0.68415175	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.426	30.824	2	1.9814E-116	27407	160511_QHF_FH_JSI11i_1	270.32	252.46			0.9765	0.98253	11.773	4	0	Median	1.0185	0.8402	NaN	1	0	Median	0.81667	0.98597	NaN	1	0	Median	1.1519	1.1203	NaN	1	0	Median	0.93619	0.9791	NaN	1	0	Median	2168900000	1060300000	1108600000	572430000	232610000	339820000	660770000	354300000	306460000	474130000	238840000	235290000	461530000	234530000	227000000	47020	494	44250	284057;284058;284059;284060	380960;380961;380962;380963;380964;380965;380966;380967;380968;380969	380960			10	
SNLPAKAIGHR	1	Acetyl (K)	1204.6677	0.66765425	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5		3	1	2	35.544	26.422	2;3	0.00039907	14901	160513_QHF_FH_JSI10Kac_6	76.522	65.912			0.6503	0.71185	84.808	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1678	1.351	6.5935	2	0	Median	0.26225	0.26133	NaN	1	0	Median	0.37038	0.39298	NaN	1	0	Median	63331000	42383000	20948000	0	0	0	20372000	8933800	11438000	34659000	27336000	7323400	8299700	6113600	2186100	47021	1135	44251	284061;284062;284063;284064;284065;284066	380970;380971;380972;380973;380974;380975;380976	380974	990		7	
SNLPDNLKK	2	Unmodified	1027.5662	0.56620887	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	17.869	17.908	2;3	0.00092453	14441	160511_QHF_FH_JSI12i_3	67.704	51.326			0.82561	0.84292	8.4562	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82561	0.84292	8.4562	2	2	Median	248580000	136810000	111770000	0	0	0	0	0	0	0	0	0	248580000	136810000	111770000	47022	2517	44252	284067;284068	380977;380978	380978			2	
SNLQNCSK	1	Unmodified	949.42873	0.42872911	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		5.1538	5.0487	2	0.0055333	2818	160511_QHF_FH_JSI11i_1	62.582	39.154			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47023	2618	44253	284069	380979	380979			1	
SNLSIVSINTVSQPR	0	Unmodified	1613.8737	0.87368386	406	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		73.401	62.67	2	6.7145E-06	33481	160513_QHF_FH_JSI11Kac_5	105.17	89.281			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47024	406	44254	284070	380980	380980			1	
SNLSKGTGSR	1	Acetyl (K);Acetyl (Protein N-term)	1089.5415	0.54145068	2455	Q13618	CUL3	Cullin-3	yes	yes	1	1	0	1				By MS/MS	11	0				1									1	25.719	18.247	2	0.03549	8182	160513_QHF_FH_JSI12Kacf_1	36.334	20.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47025	2455	44255	284071	380981	380981			1	
SNLVDNTNQVEVLQR	0	Unmodified	1727.8802	0.8802258	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		53.151	52.483	2	1.7773E-21	47247	160511_QHF_FH_JSI10i_1	176.91	152.53			0.96134	0.97419	7.3413	3	1	Plateau	1.2618	1.0325	NaN	1	0	Median	0.77053	0.91919	NaN	1	0	Median	0.96134	0.90135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	211770000	98602000	113160000	72757000	31106000	41651000	67756000	33570000	34187000	71253000	33926000	37327000	0	0	0	47026	5017;5423	44257	284072;284073;284074	380982;380983;380984;380985;380986	380983			5	
SNLVDNTNQVEVLQRDPNSPLYSVK	1	Unmodified	2828.4305	0.43045026	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	72.561	72.014	3	1.0822E-30	63105	160511_QHF_FH_JSI11i_2	169.36	166.79			1.0451	1.1453	12.438	8	1	Median	1.0452	0.89203	NaN	1	0	Median	1.0036	1.1971	5.7926	2	1	Median	1.3088	1.2182	11.658	3	0	Median	1.0281	1.1073	4.2995	2	0	Median	1047600000	468810000	578760000	155520000	66676000	88839000	279300000	115520000	163780000	359850000	174040000	185800000	252910000	112570000	140340000	47027	5017;5423	44258	284075;284076;284077;284078;284079;284080;284081;284082	380987;380988;380989;380990;380991;380992;380993;380994;380995;380996;380997;380998;380999;381000;381001;381002	380997			15	
SNLVISDPIPGAK	1	Unmodified	1309.7242	0.72416608	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		62.086	61.455	2	0.00055853	54634	160511_QHF_FH_JSI9i_1	88.187	67.316			0.47984	0.42738	34.922	3	3	Plateau	0.37034	0.30244	NaN	1	1	Median	0.36768	0.42738	NaN	1	1	Median	0.62173	0.60808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155940000	116160000	39774000	73577000	59843000	13734000	41342000	29428000	11914000	41019000	26892000	14127000	0	0	0	47028	5478	44259	284083;284084;284085	381003;381004;381005	381005			3	
SNLYIAESTSGR	0	Unmodified	1296.631	0.63099397	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.3	1	3					3	2		2	4	1	2	36.582	31.774	2	4.4096E-06	27027	160511_QHF_FH_JSI12i_2	123.67	110.88			1.1425	1.1633	17.844	7	1	Median	1.2002	1.014	10.008	2	0	Median	0.98569	1.1968	9.8628	3	1	Plateau	1.5556	1.5628	NaN	1	0	Median	1.2914	1.4108	NaN	1	0	Median	243660000	123450000	120210000	50809000	22344000	28466000	126400000	64415000	61987000	5024900	2104900	2919900	61427000	34585000	26842000	47029	5074	44260	284086;284087;284088;284089;284090;284091;284092;284093;284094	381006;381007;381008;381009;381010;381011;381012;381013;381014;381015;381016	381006			10	
SNMDNMFESYINNLR	0	Unmodified	1846.7978	0.79781808	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.639	3	10	4							3	4	5	5	95.831	95.623	2;3	8.064E-261	82453	160511_QHF_FH_JSI12i_2	358.65	348.59		+	1.0119	1.0328	19.513	15	3	Median	1.046	0.88736	4.2216	2	0	Median	0.79558	0.98265	9.3191	3	0	Median	1.0286	1.0328	26.621	5	0	Median	1.1003	1.1658	10.69	5	3	Median	1757200000	862130000	895070000	326080000	158040000	168040000	339400000	185060000	154340000	711940000	338080000	373860000	379770000	180940000	198830000	47030	51	44261	284095;284096;284097;284098;284099;284100;284101;284102;284103;284104;284105;284106;284107;284108;284109;284110;284111	381017;381018;381019;381020;381021;381022;381023;381024;381025;381026;381027;381028;381029;381030;381031;381032;381033;381034;381035;381036;381037	381026			20	
SNMDNMFESYINNLR	0	Oxidation (M)	1862.7927	0.7927327	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	2	2	82.645	81.912	2	2.1451E-07	71641	160511_QHF_FH_JSI10i_2	97.214	83.786		+	0.87803	0.98079	14.671	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85962	1.0121	NaN	1	0	Median	0.98509	0.99772	24.963	2	0	Median	0.89683	0.9505	NaN	1	0	Median	84743000	46266000	38477000	0	0	0	23216000	16399000	6817300	38136000	19947000	18190000	23391000	9920600	13470000	47031	51	44261	284112;284113;284114;284115;284116;284117;284118	381038;381039;381040;381041;381042;381043;381044;381045	381045		24;25	8	
SNMDNMFESYINNLRR	0	Unmodified	2002.8989	0.89892911	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	4	4	2	1	86.907	85.824	2;3	1.6336E-16	70945	160511_QHF_FH_JSI9i_3	156.17	140.54		+	1.0486	0.99827	7.0753	11	0	Median	1.1619	0.97142	2.5382	4	0	Median	0.84537	1.0155	10.03	4	0	Median	1.0347	1.0038	7.2782	2	0	Median	1.0395	1.0586	NaN	1	0	Median	1354000000	685990000	668030000	565300000	255380000	309910000	629970000	349980000	279990000	132770000	68870000	63895000	25988000	11758000	14230000	47032	51	44262	284119;284120;284121;284122;284123;284124;284125;284126;284127;284128;284129	381046;381047;381048;381049;381050;381051;381052;381053;381054;381055;381056;381057;381058;381059;381060;381061;381062;381063;381064	381051			19	
SNMDNMFESYINNLRR	0	Oxidation (M)	2018.8938	0.89384373	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1	By MS/MS				3	0			3							3				75.319	73.867	3	0.00030954	60135	160511_QHF_FH_JSI9i_3	59.728	52.491		+	1.1858	0.97575	4.1682	3	0	Plateau	1.1858	0.97575	4.1682	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292350000	131590000	160760000	292350000	131590000	160760000	0	0	0	0	0	0	0	0	0	47033	51	44262	284130;284131;284132	381065;381066;381067	381066		24;25	3	
SNMEKHLFNLK	2	Acetyl (K);Acetyl (Protein N-term)	1443.718	0.71803484	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	1	1	0	1		By MS/MS	By MS/MS		15	0								2			1	1		78.551	67.941	2	7.4527E-06	36048	160513_QHF_FH_JSI11Kac_5	49.368	41.987			0.31015	0.30446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31015	0.30446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13906000	10329000	3577200	0	0	0	0	0	0	13906000	10329000	3577200	0	0	0	47034	3240	44263	284133;284134	381068;381069	381068	2809;2810		2	
SNMEKHLFNLK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1459.7129	0.71294946	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	1	1	1	1			By MS/MS		15	0								1				1		69.492	58.629	2	0.00023655	31488	160513_QHF_FH_JSI11Kac_5	82.029	71.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47035	3240	44263	284135	381070	381070	2809;2810	2231	1	
SNMGHPEPASGLAALAK	1	Oxidation (M)	1665.8145	0.81445442	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.57		1	6					3		1	1	4	4	43.594	40.278	2;3	7.1483E-22	34216	160511_QHF_FH_JSI12i_3	174.95	158.03			1.0791	1.0712	3.9165	10	5	Median	1.2939	1.1006	NaN	1	1	Median	0.90802	1.0761	NaN	1	0	Median	1.1268	1.0366	4.9735	4	2	Median	1.0596	1.0769	3.2095	4	2	Median	2725600000	1254500000	1471100000	143090000	52329000	90761000	5727100	2935600	2791400	844540000	345980000	498560000	1732200000	853250000	878980000	47036	1650	44264	284136;284137;284138;284139;284140;284141;284142;284143;284144;284145	381071;381072;381073;381074;381075;381076;381077;381078;381079;381080;381081;381082;381083;381084	381081		1323	14	
SNMGHPEPASGLAALAK	1	Unmodified	1649.8195	0.8195398	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.32		8	8					1	3	6	4	5	5	49.348	46.642	2;3	5.8364E-16	40070	160511_QHF_FH_JSI12i_2	166.04	154.17			1.0819	1.0642	12.602	20	0	Median	1.2486	1.1231	10.405	6	0	Plateau	0.94921	1.1439	10.894	4	0	Median	0.97685	0.98748	7.6549	5	0	Median	0.97832	1.0693	15.121	5	0	Median	14569000000	6906600000	7662100000	1723500000	895270000	828260000	2450600000	1324300000	1126300000	5020900000	2315000000	2705900000	5373600000	2371900000	3001700000	47037	1650	44264	284146;284147;284148;284149;284150;284151;284152;284153;284154;284155;284156;284157;284158;284159;284160;284161;284162;284163;284164;284165	381085;381086;381087;381088;381089;381090;381091;381092;381093;381094;381095;381096;381097;381098;381099;381100;381101;381102;381103;381104;381105;381106;381107;381108;381109;381110;381111;381112;381113;381114;381115;381116;381117;381118;381119	381091			34	
SNMHFTSSSTGGLSSSQSSYSPSNR	0	Unmodified	2592.1147	0.11467178	5182	Q9P0J7	KCMF1	E3 ubiquitin-protein ligase KCMF1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				38.375	36.884	3	2.0645E-06	30148	160511_QHF_FH_JSI9i_3	58.418	58.418			1.318	1.0893	NaN	1	0	Median	1.318	1.0893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22507000	7561100	14946000	22507000	7561100	14946000	0	0	0	0	0	0	0	0	0	47038	5182	44265	284166	381120;381121	381121			2	
SNNIINETTTR	0	Unmodified	1261.6262	0.62624295	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.27	1	5					1			1	1	1	4	26.208	23.732	2	0.00013488	20340	160511_QHF_FH_JSI9i_2	84.17	66.306			0.77663	0.95432	56.496	5	2	Median	0.35591	0.30873	NaN	1	0	Median	0.77663	0.95432	NaN	1	0	Median	1.3036	1.364	NaN	1	1	Median	0.74652	0.7954	25.924	2	1	Median	106090000	62230000	43862000	41753000	25463000	16290000	23638000	14862000	8775600	22237000	10736000	11501000	18464000	11169000	7295200	47039	4989	44266	284167;284168;284169;284170;284171;284172;284173	381122;381123;381124;381125;381126;381127;381128;381129	381126			8	
SNNSETSSVAQSGSESK	1	Unmodified	1697.734	0.73401507	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					2	1	1	2	8.5945	8.1782	2;3	1.0907E-296	6047	160511_QHF_FH_JSI10i_1	370.21	350.44			0.95976	0.91492	87.767	5	1	Median	0.45819	0.37687	145.76	2	1	Median	0.70037	0.83626	NaN	1	0	Median	0.95976	0.91492	NaN	1	0	Median	0.98021	0.99691	NaN	1	0	Median	503610000	259470000	244140000	132030000	67801000	64233000	130940000	77385000	53558000	108070000	52687000	55381000	132570000	61600000	70970000	47040	1685;31;191	44267	284174;284175;284176;284177;284178;284179	381130;381131;381132;381133;381134;381135;381136;381137;381138;381139	381135			10	
SNNSETSSVAQSGSESKVEPK	2	Unmodified	2150.9927	0.99274896	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	16.672	16.383	3	3.9362E-06	14043	160511_QHF_FH_JSI12i_1	90.397	61.298			0.39187	0.38991	182.6	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4499	1.4181	NaN	1	1	Median	0.10591	0.10721	NaN	1	1	Median	225240000	158440000	66794000	0	0	0	0	0	0	42138000	11829000	30309000	183100000	146610000	36485000	47041	1685;31;191	44268	284180;284181	381140;381141	381141			2	
SNNSMAQAMK	1	Unmodified	1080.4692	0.46921372	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			2	2	2	2	13.452	11.836	2	2.2608E-12	9716	160511_QHF_FH_JSI11i_1	155.06	140.9			1.3892	1.3233	15.848	6	2	Median	1.5008	1.2177	NaN	1	0	Median	1.3496	1.6083	NaN	1	0	Median	1.2893	1.2669	17.916	2	1	Median	1.2307	1.2849	20.783	2	1	Median	904430000	426190000	478240000	181750000	77367000	104380000	182930000	87584000	95350000	253210000	121860000	131350000	286540000	139380000	147160000	47042	348	44269	284182;284183;284184;284185;284186;284187;284188;284189	381142;381143;381144;381145;381146;381147;381148;381149;381150;381151	381142			10	
SNNSMAQAMK	1	Oxidation (M)	1096.4641	0.46412834	348	O43633	CHMP2A	Charged multivesicular body protein 2a	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	12.507	12.109	2	0.020225	9972	160511_QHF_FH_JSI12i_1	64.654	59.963			1.0927	1.1231	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0927	1.1231	NaN	1	1	Median	96442000	41581000	54860000	0	0	0	0	0	0	0	0	0	96442000	41581000	54860000	47043	348	44269	284190	381152	381152		135	1	
SNNVEMDWVLK	1	Unmodified	1333.6336	0.63363651	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							3	2	3	2	69.473	68.663	2	1.5746E-18	60517	160511_QHF_FH_JSI9i_2	166.55	146.76			0.92851	0.94093	11.792	9	1	Median	0.92027	0.7687	15.197	3	0	Plateau	0.77161	0.92458	2.4789	2	0	Median	0.99849	0.98779	13.31	2	1	Median	0.92806	1.0151	0.91665	2	0	Median	2231300000	1189800000	1041500000	404230000	223930000	180300000	635290000	387080000	248210000	568930000	271960000	296970000	622890000	306860000	316030000	47044	1383	44270	284191;284192;284193;284194;284195;284196;284197;284198;284199;284200	381153;381154;381155;381156;381157;381158;381159;381160;381161;381162;381163;381164;381165;381166;381167;381168;381169;381170	381167			18	
SNNVEMDWVLKHTGPNSPDTANDGFVR	1	Acetyl (K);Oxidation (M)	3057.3887	0.3886618	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		75.865	66.529	3	4.1119E-07	36242	160513_QHF_FH_JSI11Kac_6	90.907	84.746			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11799000	11799000	0	0	0	0	0	0	0	11799000	11799000	0	0	0	0	47045	1383	44271	284201	381171	381171	1325	1021	1	
SNNVEMDWVLKHTGPNSPDTANDGFVR	1	Acetyl (K)	3041.3937	0.39374717	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		81.29	71.976	3;4	1.1572E-78	39598	160513_QHF_FH_JSI11Kac_6	251.82	228.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115870000	115870000	0	0	0	0	0	0	0	115870000	115870000	0	0	0	0	47046	1383	44271	284202;284203	381172;381173	381172	1325		2	
SNPDQPAVILLLR	0	Unmodified	1434.8195	0.81946344	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	85.249	74.792	2	1.0362E-08	39454	160513_QHF_FH_JSI11Kac_5	117.67	97.683			0.87831	0.96809	5.711	6	0	Median	1.2686	1.0596	NaN	1	0	Median	0.81903	0.96809	3.7955	2	0	Median	0.91828	0.91326	NaN	1	0	Median	0.89799	0.97934	5.9634	2	0	Median	35867000	19523000	16344000	2799000	1261800	1537200	7262400	4023400	3239100	20021000	10844000	9177200	5784800	3393900	2390800	47047	3117	44272	284204;284205;284206;284207;284208;284209	381174;381175;381176;381177	381176			4	
SNPEDQILYQTER	0	Unmodified	1591.7478	0.74781464	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4	5.2	3					1				1	1	2		50.512	47.596	2	0.00022361	42646	160511_QHF_FH_JSI10i_1	103.46	89.163			0.9415	0.8949	4.7048	4	3	Median	1.0793	0.89374	NaN	1	1	Median	0.72624	0.89018	NaN	1	1	Median	0.9415	0.93772	6.4261	2	1	Median	NaN	NaN	NaN	0	0	Median	734920000	375130000	359800000	198760000	98071000	100690000	281410000	155520000	125890000	254750000	121540000	133210000	0	0	0	47048	2508	44273	284210;284211;284212;284213	381178;381179;381180;381181	381180			4	
SNPFAHLAEPLDPVQPGK	1	Acetyl (Protein N-term)	1957.9898	0.98977625	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	90.135	89.691	2;3	8.8824E-09	81184	160511_QHF_FH_JSI10i_1	66.989	56.379			0.81061	0.95542	99.103	3	1	Plateau	6.5443	5.5443	NaN	1	1	Median	0.81061	0.95542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0036	1.0423	NaN	1	0	Median	117310000	46765000	70547000	29666000	913280	28752000	46367000	25474000	20893000	0	0	0	41279000	20377000	20902000	47049	1194	44274	284214;284215;284216	381182;381183;381184;381185;381186	381185			5	
SNPFAHLAEPLDPVQPGKK	2	Acetyl (Protein N-term)	2086.0847	0.084739267	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	79.377	78.681	3	0.00011554	67992	160511_QHF_FH_JSI12i_2	67.227	63.276			1.324	1.3964	64.27	5	4	Median	3.845	3.1722	NaN	1	1	Median	4.255	5.167	NaN	1	1	Median	1.324	1.3563	NaN	1	1	Median	1.1956	1.2931	10.871	2	1	Median	172720000	37884000	134830000	26128000	3597300	22531000	26763000	4028000	22735000	62318000	13224000	49094000	57509000	17035000	40474000	47050	1194	44275	284217;284218;284219;284220;284221	381187;381188;381189;381190;381191	381187			5	
SNPLRTEDQTLITK	1	Unmodified	1614.8577	0.85769944	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.631	38.631	2	0.055533	33916	160511_QHF_FH_JSI11i_3	66.289	32.403			0.91297	0.84954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91297	0.84954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21579000	13767000	7812500	0	0	0	0	0	0	21579000	13767000	7812500	0	0	0	47051	2338	44276	284222	381192	381192			1	
SNPNFFEQR	0	Unmodified	1137.5203	0.52032131	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.312	35.96	2	0.0065635	30574	160511_QHF_FH_JSI12i_2	54.416	26.198			1.0045	1.0994	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0045	1.0994	NaN	1	0	Median	19299000	9800700	9498200	0	0	0	0	0	0	0	0	0	19299000	9800700	9498200	47052	5294	44277	284223	381193	381193			1	
SNPSASSGPWKPAK	2	Acetyl (K)	1454.7154	0.7153923	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	43.049	33.466	2	1.5852E-23	19902	160513_QHF_FH_JSI11Kac_4	150.68	131.44			0.9468	0.99295	8.998	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78452	0.919	9.335	2	0	Median	1.0205	0.99295	NaN	1	0	Median	0.96722	1.0696	2.5305	2	0	Median	42835000	23285000	19550000	0	0	0	15601000	8759000	6842400	10361000	5624600	4736600	16872000	8901600	7970500	47053	4143	44278	284224;284225;284226;284227;284228	381194;381195;381196;381197;381198;381199;381200;381201;381202;381203	381197	3049		10	
SNPSAVAGNETPGASTK	1	Unmodified	1586.7536	0.7536283	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	19.157	18.75	2	9.4173E-11	16159	160511_QHF_FH_JSI12i_1	102.5	87.815			0.98973	0.9778	25.052	4	2	Median	0.98974	0.842	NaN	1	0	Median	0.98972	1.1616	NaN	1	0	Median	0.91656	0.88506	35.239	2	2	Median	NaN	NaN	NaN	0	0	Median	133680000	70715000	62965000	37681000	19184000	18497000	37892000	18871000	19021000	58107000	32660000	25447000	0	0	0	47054	5268	44279	284229;284230;284231;284232;284233	381204;381205;381206;381207;381208;381209;381210	381206			7	
SNPSENEEK	1	Unmodified	1032.436	0.43598256	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.5	5.5	3				3						2	2	2	4.8964	1.1815	2	0.0009624	2434	160511_QHF_FH_JSI11i_1	82.645	65.869			1.1206	1.2347	34.261	6	2	Median	NaN	NaN	NaN	0	0	Median	1.5441	1.7855	37.721	2	1	Median	1.3417	1.2972	43.017	2	1	Median	1.02	1.0814	4.2881	2	0	Median	328500000	134270000	194230000	0	0	0	76587000	25296000	51291000	97510000	36417000	61094000	154400000	72558000	81847000	47055	2373	44280	284234;284235;284236;284237;284238;284239	381211;381212;381213;381214;381215	381211			4	
SNPSIQATLNK	1	Unmodified	1171.6197	0.619701	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.459	31.079	2	6.4514E-05	27734	160511_QHF_FH_JSI11i_1	93.096	44.301			0.81943	0.95573	38.755	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81943	0.95573	NaN	1	0	Median	0.76215	0.73006	NaN	1	0	Median	1.5263	1.5675	NaN	1	0	Median	99725000	48127000	51598000	0	0	0	41098000	23882000	17216000	29640000	13583000	16056000	28988000	10662000	18326000	47056	3144	44281	284240;284241;284242;284243	381216;381217;381218;381219;381220	381216			5	
SNPSVFVIFQK	1	Unmodified	1264.6816	0.68157298	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	5.99			4					4	3	2	2	4	3	81.792	75.362	2	2.8772E-20	38576	160513_QHF_FH_JSI12Kac_6	171.85	159.81			1.0789	0.99771	15.413	11	3	Median	1.2666	1.0689	14.37	2	0	Median	0.89094	1.0233	17.382	2	0	Median	1.1351	1.0706	9.5921	4	2	Median	1.0399	1.075	25.041	3	1	Plateau	939610000	446310000	493300000	219150000	103240000	115910000	40164000	21183000	18981000	458140000	217700000	240440000	222160000	104190000	117970000	47057	3250	44282	284244;284245;284246;284247;284248;284249;284250;284251;284252;284253;284254	381221;381222;381223;381224;381225;381226;381227;381228;381229;381230;381231;381232;381233;381234;381235	381235			15	
SNPYYIVK	1	Unmodified	982.51238	0.51238239	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	36.398	35.665	2	0.003598	30470	160511_QHF_FH_JSI12i_2	71.342	64.113			0.61194	0.66555	27.776	6	0	Median	0.55076	0.48058	NaN	1	0	Median	0.53225	0.64146	38.839	2	0	Median	0.83279	0.82868	9.0241	2	0	Median	0.52487	0.56975	NaN	1	0	Median	462850000	267940000	194910000	57204000	30856000	26349000	167800000	109920000	57874000	180360000	92710000	87649000	57487000	34453000	23034000	47058	5479	44283	284255;284256;284257;284258;284259;284260;284261	381236;381237;381238;381239;381240;381241	381237			6	
SNPYYIVKQGK	2	Acetyl (K)	1337.698	0.69795133	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	14	0							3				1	1	1	56.927	46.194	2	5.0886E-07	26617	160513_QHF_FH_JSI11Kac_4	112.36	95.127			0.66553	0.77933	21.122	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66553	0.77933	NaN	1	0	Median	0.61256	0.5999	NaN	1	0	Median	0.84145	0.91125	NaN	1	0	Median	26762000	15932000	10830000	0	0	0	5217800	2934800	2283000	14808000	9610500	5197800	6736100	3387000	3349100	47059	5479	44284	284262;284263;284264	381242;381243;381244;381245	381242	3444		4	
SNQIPTEVR	0	Unmodified	1042.5407	0.5407224	4500	Q9BWH2	FUNDC2	FUN14 domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.982	21.455	2	0.00026574	18775	160511_QHF_FH_JSI12i_1	83.948	55.739			0.87876	0.94859	6.4474	4	0	Median	1.2284	0.98714	NaN	1	0	Median	0.83721	0.99014	NaN	1	0	Median	0.87545	0.86742	NaN	1	0	Median	0.88209	0.91156	NaN	1	0	Median	526130000	247770000	278360000	178060000	71729000	106330000	110530000	59150000	51384000	134980000	67095000	67889000	102560000	49798000	52759000	47060	4500	44285	284265;284266;284267;284268	381246;381247;381248;381249	381247			4	
SNQLFNGHGGHIMPPTQSQFGEMGGK	1	Unmodified	2755.2595	0.2595023	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		60.319	59.176	4	6.64E-10	49472	160511_QHF_FH_JSI10i_3	54.658	51.384			1.0546	0.94884	11.008	4	1	Median	1.2729	1.0469	4.2572	2	1	Median	0.74016	0.85562	NaN	1	0	Median	0.91195	0.88625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	233740000	116640000	117100000	99769000	43443000	56326000	70652000	41455000	29197000	63319000	31742000	31577000	0	0	0	47061	2084	44286	284269;284270;284271;284272	381250;381251;381252;381253;381254;381255;381256;381257;381258	381252			9	
SNQMPSLGALYSAEHGLLLEK	1	Unmodified	2257.1413	0.14126787	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		93.941	93.941	3	0.0021678	83665	160511_QHF_FH_JSI11i_3	44.5	35.899			0.733	0.66735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.733	0.66735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32477000	18971000	13506000	0	0	0	0	0	0	32477000	18971000	13506000	0	0	0	47062	2257	44287	284273	381259	381259			1	
SNQNGKDSKPSSTPR	2	Acetyl (K)	1643.7863	0.78632542	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	2		By MS/MS		By MS/MS	14.5	0.5							1	1			1		1	8.7912	-0.85439	3	0.038888	3222	160513_QHF_FH_JSI10Kac_4	43.024	38.041			0.87725	1.0033	34.56	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0697	1.281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71943	0.78578	NaN	1	0	Median	54068000	26657000	27412000	0	0	0	51015000	24952000	26063000	0	0	0	3053300	1704300	1349000	47063	857	44288	284274;284275	381260	381260	541		1	
SNQQLENDLNLMDIK	1	Unmodified	1773.8567	0.85671317	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	77.56	77.054	2;3	7.8688E-261	68622	160511_QHF_FH_JSI9i_1	358.82	340.07			1.0293	0.98964	50.576	9	2	Plateau	1.1754	0.96647	9.9679	2	0	Median	0.84681	1.0037	81.093	3	2	Plateau	1.0067	0.98071	3.0295	2	0	Median	0.98003	1.0154	4.3841	2	0	Median	2149000000	1030300000	1118700000	447780000	211170000	236620000	543130000	267480000	275650000	601820000	303640000	298180000	556280000	248010000	308270000	47064	1600	44289	284276;284277;284278;284279;284280;284281;284282;284283;284284	381261;381262;381263;381264;381265;381266;381267;381268;381269;381270;381271;381272;381273;381274;381275;381276;381277;381278;381279;381280	381277			20	
SNQQLENDLNLMDIK	1	Oxidation (M)	1789.8516	0.85162779	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	63.633	63.129	2	0.0011177	57476	160511_QHF_FH_JSI12i_1	101.39	73.213			0.73085	0.80714	17.576	2	2	Median	NaN	NaN	NaN	0	0	Median	0.61227	0.71281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87241	0.91395	NaN	1	1	Median	59960000	39490000	20470000	0	0	0	39569000	29951000	9618000	0	0	0	20390000	9538300	10852000	47065	1600	44289	284285;284286	381281;381282	381281		1278	2	
SNQQLVDIIEK	1	Unmodified	1285.6878	0.68778057	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.94	4	5	1			2	1			2	5	2	4	61.651	59.117	2	5.6915E-48	53269	160511_QHF_FH_JSI10i_1	220.25	182.78			0.85654	0.94994	34.509	11	2	Median	1.1186	0.94098	1.3396	2	0	Median	0.82733	0.9819	52.269	5	2	Median	0.93665	0.91855	20.474	2	0	Median	0.89251	0.96164	4.14	2	0	Median	2175000000	1117600000	1057400000	512640000	257520000	255120000	510400000	271940000	238460000	577620000	266340000	311270000	574380000	321780000	252600000	47066	1950	44290	284287;284288;284289;284290;284291;284292;284293;284294;284295;284296;284297;284298;284299	381283;381284;381285;381286;381287;381288;381289;381290;381291;381292;381293;381294;381295;381296;381297;381298;381299;381300;381301;381302;381303;381304;381305;381306;381307;381308;381309	381299			27	
SNQQNLGTIK	1	Unmodified	1101.5778	0.57783619	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.66	4	4	1			3	2			2	4	4	4	18.328	15.124	2	8.284E-10	12424	160511_QHF_FH_JSI9i_1	137.46	114.72			0.86106	0.9006	12.111	13	0	Median	1.1776	0.98174	12.199	2	0	Median	0.86106	1.0177	4.5007	3	0	Median	0.85829	0.85237	6.9659	4	0	Median	0.76918	0.83829	11.573	4	0	Median	4522500000	2341100000	2181400000	899620000	372650000	526970000	1233700000	653380000	580320000	1148700000	611610000	537070000	1240500000	703420000	537070000	47067	1242	44291	284300;284301;284302;284303;284304;284305;284306;284307;284308;284309;284310;284311;284312;284313	381310;381311;381312;381313;381314;381315;381316;381317;381318;381319;381320;381321;381322;381323;381324;381325;381326;381327;381328;381329;381330;381331;381332;381333;381334	381322			25	
SNQTAYVPAPLRK	1	Unmodified	1443.7834	0.78341229	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				37.112	35.64	3	0.0058226	29037	160511_QHF_FH_JSI9i_3	41.56	34.828			0.74536	0.60829	NaN	1	0	Median	0.74536	0.60829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37794000	21586000	16208000	37794000	21586000	16208000	0	0	0	0	0	0	0	0	0	47068	5463	44292	284314	381335	381335			1	
SNQTTTDNLR	0	Unmodified	1148.5422	0.54217896	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.4452	8.0959	2	2.5173E-07	5643	160511_QHF_FH_JSI9i_1	114.5	97.72			1.0978	0.95763	4.8568	4	1	Linear	1.1595	0.94744	NaN	1	0	Median	0.74498	0.88819	NaN	1	1	Median	1.0657	0.9956	NaN	1	0	Median	0.94638	0.96793	NaN	1	0	Median	288800000	149450000	139350000	73360000	35604000	37756000	76908000	44816000	32092000	70038000	35758000	34280000	68494000	33271000	35223000	47069	4802	44293	284315;284316;284317;284318	381336;381337;381338;381339;381340	381340			5	
SNQVKTCK	2	Acetyl (K)	1005.4913	0.49132937	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	7.4986	0.27546	2	0.00024627	2942	160513_QHF_FH_JSI11Kac_3	120.12	72.27			0.3351	0.34564	80.603	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20202	0.19548	NaN	1	0	Median	0.55584	0.61116	NaN	1	0	Median	9416000	7725900	1690100	0	0	0	0	0	0	7398900	6308800	1090100	2017000	1417000	599990	47070	1247	44294	284319;284320	381341;381342	381341	1146		2	
SNSDESNFSEK	1	Unmodified	1242.5	0.50003938	749	O95999	BCL10	B-cell lymphoma/leukemia 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.065	9.6846	2	3.775E-19	7588	160511_QHF_FH_JSI12i_1	168.74	143.81			0.99481	1.0615	9.8359	4	0	Median	1.373	1.1277	NaN	1	0	Median	1.0078	1.18	NaN	1	0	Median	0.98195	0.95811	NaN	1	0	Median	0.9569	0.9992	NaN	1	0	Median	181150000	88446000	92704000	47203000	21647000	25556000	42232000	19403000	22829000	40859000	19759000	21100000	50856000	27637000	23219000	47071	749	44295	284321;284322;284323;284324	381343;381344;381345;381346;381347	381344			5	
SNSGQYPAK	1	Unmodified	950.44576	0.44575938	670	O95274	LYPD3	Ly6/PLAUR domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.1442	3.4867	2	1.872E-16	3427	160511_QHF_FH_JSI11i_1	176.6	144.67			0.84615	0.83668	11.091	6	0	Median	0.9934	0.82433	NaN	1	0	Median	0.78378	0.931	17.977	2	0	Median	0.83902	0.81999	10.059	2	0	Median	0.80464	0.84922	NaN	1	0	Median	758240000	421820000	336430000	161340000	82876000	78460000	187840000	116600000	71237000	161120000	92938000	68180000	247950000	129400000	118550000	47072	670	44296	284325;284326;284327;284328;284329;284330	381348;381349;381350;381351;381352;381353	381349			6	
SNSHAAIDWGK	1	Unmodified	1184.5574	0.5574351	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.647	20.648	2	0.00064572	16877	160511_QHF_FH_JSI12i_3	83.182	72.031			3.9533	4.1565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9533	4.1565	NaN	1	1	Median	13691000	3103400	10587000	0	0	0	0	0	0	0	0	0	13691000	3103400	10587000	47073	3212	44297	284331	381354	381354			1	
SNSLAFIK	1	Unmodified	878.48617	0.48616764	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.25	1		2					2		1	2	1	1	49.233	43.394	2	0.004312	24197	160513_QHF_FH_JSI11Kac_5	82.452	46.572			1.5926	1.7878	71.492	4	2	Median	6.6099	5.3795	NaN	1	1	Median	1.9753	2.2976	NaN	1	1	Median	1.0534	1.0565	NaN	1	0	Median	1.284	1.3911	NaN	1	0	Median	179290000	44263000	135030000	81215000	11846000	69369000	87107000	27388000	59719000	8063200	3714500	4348700	2908300	1313600	1594800	47074	2517	44298	284332;284333;284334;284335;284336	381355;381356;381357;381358	381358			4	
SNSLAFIKR	1	Acetyl (K)	1076.5978	0.59784335	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		60.871	49.975	2	0.034202	27338	160513_QHF_FH_JSI11Kac_5	60.828	38.088			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2256500	2256500	0	0	0	0	0	0	0	2256500	2256500	0	0	0	0	47075	2517	44299	284337	381359	381359			1	
SNSLISIK	1	Unmodified	860.49673	0.49673232	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				47.144	36.847	2	0.059441	19968	160513_QHF_FH_JSI9Kac_5	41.876	10.647			1.1472	0.96304	NaN	1	0	Median	1.1472	0.96304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4539800	2152100	2387800	4539800	2152100	2387800	0	0	0	0	0	0	0	0	0	47076	552	44300	284338	381360	381360			1	
SNSLSEQLAINTSPDAVK	1	Unmodified	1872.9429	0.94288564	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	60.144	59.49	2	0.00061116	54103	160511_QHF_FH_JSI12i_1	61.657	50.732			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47077	2938	44301	284339	381361	381361			1	
SNSSFMSR	0	Unmodified	914.39162	0.39161532	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		2	1	2	1	14.308	12.322	2	0.017632	10222	160511_QHF_FH_JSI12i_2	48.423	36.217			0.9377	0.9074	23.341	6	0	Median	1.1414	0.95533	9.5503	2	0	Median	0.75403	0.9221	NaN	1	0	Median	1.173	1.141	43.331	2	0	Median	0.77532	0.83812	NaN	1	0	Median	273440000	139000000	134440000	78309000	37587000	40722000	54346000	31561000	22785000	108300000	52200000	56096000	32485000	17649000	14836000	47078	4399	44302	284340;284341;284342;284343;284344;284345	381362;381363;381364;381365;381366;381367;381368	381362			7	
SNSVEMDWVLK	1	Unmodified	1306.6227	0.62273747	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	70.683	69.967	2	5.0367E-24	63430	160511_QHF_FH_JSI10i_1	182.28	145.73			0.91587	0.94825	11.91	8	0	Median	0.97182	0.80766	20.816	2	0	Median	0.78029	0.94483	7.3867	2	0	Median	0.92963	0.92516	5.3646	2	0	Median	0.92476	0.99229	3.22	2	0	Median	706080000	360690000	345390000	103490000	47668000	55818000	202000000	118560000	83435000	196740000	92854000	103890000	203850000	101600000	102250000	47079	1864	44303	284346;284347;284348;284349;284350;284351;284352;284353	381369;381370;381371;381372;381373;381374;381375;381376;381377;381378;381379;381380;381381	381376			13	
SNSVGIQDAFNDGSDSTFQK	1	Unmodified	2115.9345	0.93450579	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			60.922	60.53	2	9.3975E-17	54738	160511_QHF_FH_JSI10i_1	121.99	102.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47080	167	44304	284354	381382	381382			1	
SNTAGSQSQVETEA	0	Unmodified	1407.6114	0.61138074	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	17.134	13.695	2	3.0917E-23	12069	160511_QHF_FH_JSI12i_1	183.33	174.63			0.99941	1.0056	6.3251	7	0	Median	1.2204	0.99365	NaN	1	0	Median	0.79902	0.93488	3.9719	2	0	Median	1.1115	1.0693	2.0137	2	0	Median	0.97448	1.0371	4.3673	2	0	Median	1120600000	553620000	566940000	272610000	123780000	148830000	234860000	127920000	106940000	334170000	154890000	179280000	278930000	147030000	131900000	47081	2193	44305	284355;284356;284357;284358;284359;284360;284361	381383;381384;381385;381386;381387;381388;381389;381390;381391;381392;381393;381394	381386			12	
SNTEEALK	1	Unmodified	890.43453	0.434526	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.323	46.082	2	0.056342	39188	160511_QHF_FH_JSI12i_3	35.88	15.325			0.83065	0.86609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83065	0.86609	NaN	1	0	Median	2047900000	1118900000	928970000	0	0	0	0	0	0	0	0	0	2047900000	1118900000	928970000	47082	2309	44306	284362	381395	381395			1	
SNTHEFVNLVK	1	Unmodified	1286.6619	0.66190017	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.63		7	7						4	5	3	6	4	40.756	38.514	2;3	2.7072E-18	33387	160511_QHF_FH_JSI11i_3	177.44	160.21			0.91353	0.93207	35.276	17	7	Median	0.83143	0.69664	42.232	5	2	Median	0.75283	0.76829	11.292	3	1	Plateau	1.2571	1.1864	34.979	5	2	Median	1.345	1.1131	15.691	4	2	Linear	2126700000	1103200000	1023500000	279150000	166120000	113040000	473790000	265700000	208090000	955380000	476640000	478740000	418320000	194720000	223600000	47083	525	44307	284363;284364;284365;284366;284367;284368;284369;284370;284371;284372;284373;284374;284375;284376;284377;284378;284379;284380	381396;381397;381398;381399;381400;381401;381402;381403;381404;381405;381406;381407;381408;381409;381410;381411;381412;381413;381414;381415;381416;381417;381418;381419	381398			23	
SNTLPISLQSIR	0	Unmodified	1327.746	0.74596415	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	2	2	3	69.735	69.035	2	1.3218E-10	60936	160511_QHF_FH_JSI9i_2	141.88	102.57			0.85879	0.92399	36.239	8	2	Median	0.73999	0.61722	68.768	2	1	Median	0.6582	0.79441	20.606	2	1	Median	1.0411	1.0308	15.387	2	0	Median	0.96054	1.0251	14.762	2	0	Median	2831100000	1509400000	1321700000	576280000	285750000	290530000	720700000	430540000	290170000	861320000	438000000	423310000	672800000	355110000	317700000	47084	1544	44308	284381;284382;284383;284384;284385;284386;284387;284388;284389	381420;381421;381422;381423;381424;381425;381426;381427;381428;381429;381430;381431	381426			12	
SNTPESIAETPPAR	0	Unmodified	1468.7158	0.71578623	5630	Q9Y4H2	IRS2	Insulin receptor substrate 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	30.652	30.252	2	0.00058894	27238	160511_QHF_FH_JSI12i_1	68.44	58.209			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47085	5630	44309	284390;284391	381432;381433	381433			2	
SNTPILVDGK	1	Unmodified	1042.5659	0.56587452	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	5.78	9	4	5		3	3	4	2		5	7	8	10	36.411	31.786	2	3.8042E-14	28318	160511_QHF_FH_JSI10i_1	161.63	142.9			0.96896	1.0068	22.432	27	6	Median	1.2584	1.0068	17.801	5	1	Median	0.85904	1.003	9.1814	7	1	Median	1.0369	1.0204	8.2044	6	2	Median	0.91084	0.95794	35.677	9	2	Median	16514000000	8478000000	8035600000	3498400000	1478300000	2020100000	4191500000	2256100000	1935400000	3687400000	1710300000	1977100000	5136400000	3033200000	2103100000	47086	856	44310	284392;284393;284394;284395;284396;284397;284398;284399;284400;284401;284402;284403;284404;284405;284406;284407;284408;284409;284410;284411;284412;284413;284414;284415;284416;284417;284418;284419;284420;284421	381434;381435;381436;381437;381438;381439;381440;381441;381442;381443;381444;381445;381446;381447;381448;381449;381450;381451;381452;381453;381454;381455;381456;381457;381458;381459;381460;381461;381462;381463;381464;381465;381466;381467;381468;381469;381470;381471;381472;381473;381474;381475;381476;381477;381478;381479;381480;381481;381482;381483;381484;381485	381459			52	
SNTSKPNTVK	2	Acetyl (K)	1116.5775	0.57750184	3067	Q6N043	ZNF280D	Zinc finger protein 280D	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		14.997	7.6338	2	0.01391	6391	160513_QHF_FH_JSI11Kac_3	56.729	30.993			1.2473	1.1799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2473	1.1799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2049300	1046500	1002700	0	0	0	0	0	0	2049300	1046500	1002700	0	0	0	47087	3067	44311	284422	381486	381486	2759		1	
SNTSLPPLPFK	1	Unmodified	1199.655	0.65502388	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.19	69.824	2	0.0044874	63641	160511_QHF_FH_JSI11i_1	54.539	41.162			1.6794	1.6255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6794	1.6255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18824000	7960900	10863000	0	0	0	0	0	0	18824000	7960900	10863000	0	0	0	47088	1576	44312	284423	381487	381487			1	
SNTSNEEFK	1	Unmodified	1054.4567	0.456718	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.0258	8.3416	2	0.0063718	5959	160511_QHF_FH_JSI9i_1	63.184	45.944			2.5447	1.9969	NaN	1	1	Median	2.5447	1.9969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25942000	4236200	21705000	25942000	4236200	21705000	0	0	0	0	0	0	0	0	0	47089	3140	44313	284424	381488	381488			1	
SNTSPEELGPLANQLTSDYGR	0	Unmodified	2248.0608	0.060768941	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	77.35	76.827	2;3	5.8007E-121	69781	160511_QHF_FH_JSI10i_1	279.92	247.85			1.2156	1.0588	9.9987	7	0	Median	1.2906	1.0455	3.0021	2	0	Median	0.9069	1.0588	NaN	1	0	Median	1.1371	1.0892	12.456	2	0	Median	1.1091	1.1549	18.043	2	0	Median	439590000	199470000	240120000	88867000	35144000	53723000	87580000	40783000	46797000	155660000	70119000	85545000	107480000	53427000	54056000	47090	5616	44314	284425;284426;284427;284428;284429;284430;284431;284432	381489;381490;381491;381492;381493;381494;381495;381496;381497;381498;381499;381500;381501;381502;381503;381504;381505;381506	381501			17	
SNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMR	0	Acetyl (Protein N-term)	4352.0211	0.021112331	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	1	0	0		By MS/MS			1	0	1										1			76.52	76.353	4	9.5391E-17	69247	160511_QHF_FH_JSI10i_1	71.895	63.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47091	2230	44315	284433	381507	381507			1	
SNTVVIMNMQGQIVR	0	Unmodified	1688.8702	0.87019516	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.82	4	4							2	3	3	1	3	69.037	66.199	2	1.135E-87	36092	160513_QHF_FH_JSI10Kac_6	234.17	189.87			1.0758	1.0623	11.565	7	1	Median	1.2238	1.055	5.398	2	0	Median	0.88243	1.0814	18.355	3	1	Median	1.0758	1.0623	NaN	1	0	Median	0.86439	0.97181	NaN	1	0	Median	237900000	116250000	121660000	45436000	21474000	23962000	94834000	43255000	51579000	48147000	26893000	21253000	49487000	24626000	24861000	47092	2801	44316	284434;284435;284436;284437;284438;284439;284440;284441;284442;284443	381508;381509;381510;381511;381512;381513;381514;381515;381516;381517;381518;381519	381519			12	
SNTVVIMNMQGQIVR	0	Oxidation (M)	1704.8651	0.86510978	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS			15	0								3		2	1			61.28	50.613	2	0.00045528	26750	160513_QHF_FH_JSI9Kac_5	84.658	78.426			1.112	1.0966	6.0221	2	1	Median	1.3899	1.1443	NaN	1	0	Median	0.88971	1.0509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3773000	1732900	2040100	2016500	810170	1206400	1756500	922690	833780	0	0	0	0	0	0	47093	2801	44316	284444;284445;284446	381520;381521;381522;381523	381520		2146;2147	4	
SNTVVIMNMQGQIVR	0	2 Oxidation (M)	1720.86	0.86002441	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.687						2	3	1		1	2	1	2	48.286	38.57	2	0.00046307	21414	160513_QHF_FH_JSI12Kac_3	69.979	53.755			0.90229	1.0144	14.332	4	1	Median	NaN	NaN	NaN	0	0	Median	0.99839	1.1751	9.1936	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85865	0.93311	0.20538	2	0	Median	8645300	4080400	4565000	0	0	0	3896100	1793000	2103100	0	0	0	4749200	2287300	2461900	47094	2801	44316	284447;284448;284449;284450;284451;284452	381524;381525;381526;381527;381528;381529	381527		2146;2147	6	
SNVIDSMLFVFGYR	0	Unmodified	1646.8127	0.81266351	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.62		1	1						7	2	2	3	2	97.75	88.994	2;3	1.318E-113	50521	160513_QHF_FH_JSI11Kac_6	287.57	246.98			1.0056	1.0213	2.5786	6	0	Median	1.1786	0.99867	NaN	1	0	Median	0.88468	1.0577	NaN	1	0	Median	1.077	1.041	3.2341	2	0	Median	0.95505	1.0176	1.0421	2	0	Median	2130300000	1056700000	1073600000	428310000	191930000	236370000	689030000	388290000	300740000	619310000	293120000	326180000	393690000	183400000	210290000	47095	4989	44317	284453;284454;284455;284456;284457;284458;284459;284460;284461	381530;381531;381532;381533;381534;381535;381536;381537;381538;381539;381540	381531			11	
SNVIDSMLFVFGYR	0	Oxidation (M)	1662.8076	0.80757813	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	88	78.558	2	0.00027672	42108	160513_QHF_FH_JSI12Kac_6	88.087	73.211			0.79035	0.8346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79035	0.8346	NaN	1	0	Median	38955000	19437000	19519000	0	0	0	0	0	0	0	0	0	38955000	19437000	19519000	47096	4989	44317	284462	381541	381541		2571	1	
SNVKPNSGELDPLYVVEVLLR	1	Unmodified	2340.2689	0.26891122	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	102.56	102.56	3	5.8897E-18	89334	160511_QHF_FH_JSI12i_3	147.93	134.06			0.89291	0.86008	5.1018	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96148	0.89167	NaN	1	0	Median	0.82923	0.8296	NaN	1	0	Median	278680000	143270000	135400000	0	0	0	0	0	0	156460000	78310000	78151000	122220000	64963000	57252000	47097	1532	44318	284463;284464	381542;381543;381544;381545	381544			4	
SNVNNNPGSITPTVELNGLAMK	1	Unmodified	2269.1372	0.13724512	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		76.964	76.638	3	0.0025655	69703	160511_QHF_FH_JSI11i_1	40.994	37.332			1.1784	1.1436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1784	1.1436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15728000	6518100	9209600	0	0	0	0	0	0	15728000	6518100	9209600	0	0	0	47098	5004	44319	284465	381546	381546			1	
SNVPTTPRWETFLQHVAAFGTK	1	Unmodified	2486.2706	0.27064256	5792				yes	yes	0	0	0	1	By MS/MS				2	0		1								1				90.993	90.634	4	0.062516	79899	160511_QHF_FH_JSI9i_2	13.455	0.52632	+		1.5265	1.3086	NaN	1	0	Median	1.5265	1.3086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41295000	20471000	20824000	41295000	20471000	20824000	0	0	0	0	0	0	0	0	0	47099	5792	44320	284466	381547	381547			1	
SNVPVETTDEIPFSFSDR	0	Unmodified	2038.9484	0.94836495	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	82.406	81.862	2	2.3083E-11	74621	160511_QHF_FH_JSI12i_1	145.29	130.41			1.3739	1.2981	8.6178	5	2	Median	1.5678	1.3015	0.36767	2	2	Median	1.0775	1.2522	NaN	1	0	Median	1.1498	1.1287	NaN	1	0	Median	1.3739	1.4335	NaN	1	0	Median	188860000	79587000	109270000	68239000	28046000	40193000	49515000	21705000	27810000	41794000	16920000	24874000	29313000	12916000	16396000	47100	5270	44321	284467;284468;284469;284470;284471	381548;381549;381550;381551;381552;381553	381549			6	
SNVQPTAAPGQK	1	Unmodified	1196.6149	0.61494998	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.777	11.374	2	7.7375E-06	9078	160511_QHF_FH_JSI10i_1	120.68	105.91			1.2927	1.2529	25.351	4	3	Median	1.6219	1.3151	NaN	1	1	Median	1.0303	1.1936	NaN	1	0	Median	1.0261	0.99011	NaN	1	1	Median	1.764	1.8147	NaN	1	1	Median	162660000	75314000	87347000	42744000	20328000	22415000	39123000	18242000	20881000	28732000	14141000	14591000	52063000	22603000	29460000	47101	4088	44322	284472;284473;284474;284475	381554;381555;381556;381557	381556			4	
SNVSDAVAQSTR	0	Unmodified	1233.5949	0.59494282	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	5.91	8	3	4		4	8	4	5	1	7	12	8	10	22.825	17.842	2;3	4.9721E-53	15947	160511_QHF_FH_JSI9i_1	214.26	172.81			0.97346	0.99765	9.0967	33	6	Median	1.2144	1.0377	9.6964	6	0	Median	0.8495	0.99765	8.4524	9	3	Median	1.0245	0.9962	5.6873	8	0	Median	0.94121	0.99721	11.497	10	3	Median	32585000000	17129000000	15455000000	5579100000	2671800000	2907300000	6642900000	3691900000	2951000000	7092700000	3484700000	3608000000	13270000000	7281100000	5989000000	47102	1908	44323	284476;284477;284478;284479;284480;284481;284482;284483;284484;284485;284486;284487;284488;284489;284490;284491;284492;284493;284494;284495;284496;284497;284498;284499;284500;284501;284502;284503;284504;284505;284506;284507;284508;284509;284510;284511;284512	381558;381559;381560;381561;381562;381563;381564;381565;381566;381567;381568;381569;381570;381571;381572;381573;381574;381575;381576;381577;381578;381579;381580;381581;381582;381583;381584;381585;381586;381587;381588;381589;381590;381591;381592;381593;381594;381595;381596;381597;381598;381599;381600;381601;381602;381603;381604;381605;381606;381607;381608	381587			51	
SNVSSPATPTASSSSSTTPTRK	1	Unmodified	2150.0451	0.045118877	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			18.249	17.283	3	1.2878E-13	14552	160511_QHF_FH_JSI9i_2	121.26	113.73			1.0705	1.0841	0.35194	2	0	Median	1.2021	1.0814	NaN	1	0	Median	0.9533	1.0868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50325000	25350000	24974000	36326000	17858000	18468000	13998000	7492000	6506400	0	0	0	0	0	0	47103	2320	44324	284513;284514	381609;381610;381611;381612;381613	381611			5	
SNVSYKNPSLMPK	2	Acetyl (K)	1505.7548	0.75481428	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	59.493	49.293	2	8.1138E-12	27297	160513_QHF_FH_JSI12Kac_4	121.02	96.678			0.74476	0.73773	9.5571	5	0	Linear	NaN	NaN	NaN	0	0	Median	0.73885	0.87281	1.4436	2	0	Median	0.71805	0.7107	NaN	1	0	Median	0.81813	0.88234	2.5037	2	0	Median	18050000	10408000	7642200	0	0	0	7050800	4108000	2942800	4721900	2848600	1873300	6277300	3451200	2826200	47104	5658	44325	284515;284516;284517;284518;284519	381614;381615;381616;381617;381618;381619;381620;381621	381619	3519		8	
SNVTAVHK	1	Unmodified	854.46102	0.46101552	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	5.7542	5.439	2;3	0.00011283	3254	160511_QHF_FH_JSI11i_2	138.4	103.57			1.1833	1.2037	13.759	10	0	Median	1.4466	1.2203	6.083	2	0	Median	0.88582	1.0875	6.7344	2	0	Median	1.3079	1.347	24.21	3	0	Median	1.116	1.2396	10.384	3	0	Median	4532500000	2331500000	2201000000	756460000	323930000	432530000	1063800000	573310000	490510000	1469900000	757280000	712610000	1242300000	676990000	565350000	47105	1698	44326	284520;284521;284522;284523;284524;284525;284526;284527;284528;284529	381622;381623;381624;381625;381626;381627;381628;381629;381630;381631;381632;381633;381634;381635;381636;381637;381638	381631			17	
SNVTAVHKANIMR	1	Acetyl (K)	1481.7773	0.77728105	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		42.867	33.247	2	6.3919E-09	18254	160513_QHF_FH_JSI11Kac_6	124.1	106.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47106	1698	44327	284530	381639	381639	1713		1	
SNYEAMIDR	0	Unmodified	1097.4812	0.48115861	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.015	33.678	2	0.032902	28630	160511_QHF_FH_JSI12i_2	39.547	31.128			1.1521	1.2562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1521	1.2562	NaN	1	0	Median	14637000	6876000	7760600	0	0	0	0	0	0	0	0	0	14637000	6876000	7760600	47107	21	44328	284531	381640;381641	381641			2	
SNYKMMFVK	2	Acetyl (K)	1188.5671	0.56713685	105	O00193	SMAP	Small acidic protein	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.5	0.5								1	1			1	1	72.446	61.68	2	0.010816	32963	160513_QHF_FH_JSI11Kac_5	71.223	60.7			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2108800	0	2108800	0	0	0	0	0	0	2108800	0	2108800	0	0	0	47108	105	44329	284532;284533	381642;381643	381642	68		2	
SNYNFEK	1	Unmodified	900.39775	0.39774656	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.09	4	4	3			3	4	3		4	5	6	6	19.747	15.396	2	0.0017572	14154	160511_QHF_FH_JSI9i_2	117.04	112.18			1.039	1.028	23.694	21	2	Median	1.3649	1.1349	10.664	4	0	Median	0.83742	1.0059	8.6337	5	1	Median	1.0478	1.028	31.123	6	1	Median	1.0232	1.1135	31.067	6	0	Median	17921000000	8488500000	9432700000	3712200000	1807100000	1905100000	4163500000	2039400000	2124100000	5651100000	2370400000	3280700000	4394400000	2271600000	2122900000	47109	2021	44330	284534;284535;284536;284537;284538;284539;284540;284541;284542;284543;284544;284545;284546;284547;284548;284549;284550;284551;284552;284553;284554	381644;381645;381646;381647;381648;381649;381650;381651;381652;381653;381654;381655;381656;381657;381658;381659;381660;381661;381662;381663;381664;381665;381666;381667;381668;381669;381670;381671;381672;381673;381674;381675;381676;381677;381678;381679;381680;381681;381682	381669			39	
SNYNLPMHK	1	Oxidation (M)	1118.5179	0.51787847	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	2.34		17	16						1	8	5	9	12	21.749	20.996	2;3	0.00017295	20377	160511_QHF_FH_JSI12i_3	92.439	74.62			1.2723	1.2356	62.777	31	10	Median	1.3528	1.1464	42.648	8	4	Median	1.0267	1.2356	75.595	5	1	Median	1.4225	1.3745	69.918	8	3	Median	1.2796	1.3536	69.386	10	2	Median	3649700000	1589300000	2060400000	549440000	213210000	336230000	530230000	290950000	239280000	1258300000	492060000	766260000	1311700000	593080000	718620000	47110	1457	44331	284555;284556;284557;284558;284559;284560;284561;284562;284563;284564;284565;284566;284567;284568;284569;284570;284571;284572;284573;284574;284575;284576;284577;284578;284579;284580;284581;284582;284583;284584;284585;284586;284587;284588	381683;381684;381685;381686;381687;381688;381689;381690;381691;381692;381693;381694;381695;381696;381697;381698;381699;381700;381701;381702;381703;381704;381705;381706;381707;381708	381705		1127	23	
SNYNLPMHK	1	Unmodified	1102.523	0.52296385	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.84		15	10						8	8	11	5	9	27.306	24.623	2;3	6.5853E-07	20572	160511_QHF_FH_JSI11i_2	155.42	116.4			1.008	0.92894	50.733	31	3	Median	1.3072	1.0891	33.597	8	0	Median	0.75709	0.89787	49.658	10	1	Median	1.008	1.0192	13.662	5	0	Median	0.7511	0.82151	72.313	8	2	Median	16148000000	7945800000	8202200000	2898500000	1386900000	1511600000	3899100000	1861200000	2037900000	5122400000	2662900000	2459500000	4228100000	2034800000	2193200000	47111	1457	44331	284589;284590;284591;284592;284593;284594;284595;284596;284597;284598;284599;284600;284601;284602;284603;284604;284605;284606;284607;284608;284609;284610;284611;284612;284613;284614;284615;284616;284617;284618;284619;284620;284621	381709;381710;381711;381712;381713;381714;381715;381716;381717;381718;381719;381720;381721;381722;381723;381724;381725;381726;381727;381728;381729;381730;381731;381732;381733;381734;381735;381736;381737;381738;381739;381740;381741;381742;381743;381744;381745;381746;381747;381748;381749;381750;381751;381752;381753;381754;381755;381756;381757;381758;381759;381760;381761;381762	381741			53	
SNYNLPMHKMINTDLSR	1	Acetyl (K)	2074.9928	0.99282949	1457	P36578	RPL4	60S ribosomal protein L4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		73.53	65.119	3	0.00060282	35168	160513_QHF_FH_JSI11Kac_6	120.11	104.86			0.27214	0.28851	246.08	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3944	1.6438	NaN	1	0	Median	0.053111	0.050639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176430000	143730000	32698000	0	0	0	47702000	18749000	28953000	128720000	124980000	3744900	0	0	0	47112	1457	44332	284622;284623	381763;381764	381763	1436		2	
SNYQLGELVK	1	Unmodified	1149.603	0.60298831	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	51.422	50.597	2	5.7095E-05	43587	160511_QHF_FH_JSI11i_2	91.636	48.772			1.2549	1.2967	21.348	8	1	Median	1.3703	1.1505	8.8987	2	0	Median	1.0876	1.2967	5.9066	2	0	Median	1.3594	1.3589	25.938	2	0	Median	1.5317	1.6858	29.595	2	1	Median	503210000	231870000	271350000	109450000	48425000	61028000	123870000	56501000	67367000	137400000	56800000	80604000	132490000	70141000	62348000	47113	5327	44333	284624;284625;284626;284627;284628;284629;284630;284631	381765;381766;381767;381768;381769;381770;381771	381769			7	
SNYVHFEFDNVTIYR	0	Unmodified	1902.8901	0.89006221	5792				yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.405	47.007	3	0.047346	40205	160511_QHF_FH_JSI12i_2	21.247	10.908	+		0.93989	1.0255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93989	1.0255	NaN	1	0	Median	39015000	19347000	19669000	0	0	0	0	0	0	0	0	0	39015000	19347000	19669000	47114	5792	44334	284632	381772	381772			1	
SNYVPPPETYTTEK	1	Unmodified	1624.7621	0.76206772	3559	Q8N6N3	C1orf52	UPF0690 protein C1orf52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	3	1	40.144	39.575	2	0.0023185	35643	160511_QHF_FH_JSI12i_1	57.019	52.77			1.0679	1.0633	17.69	5	1	Median	1.3546	1.1044	NaN	1	0	Median	0.89957	1.0621	NaN	1	0	Median	1.3357	1.2773	29.839	2	1	Median	1.0002	1.0633	NaN	1	0	Median	3598000000	1803200000	1794800000	856220000	367170000	489040000	810110000	444110000	366000000	907120000	450610000	456510000	1024600000	541350000	483210000	47115	3559	44335	284633;284634;284635;284636;284637;284638;284639;284640	381773;381774;381775;381776;381777;381778	381775			5	
SPAAECLSEK	1	Unmodified	1090.4965	0.49647433	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	14.881	14.603	2	0.010556	12015	160511_QHF_FH_JSI11i_1	57.347	41.908			1.2163	1.1989	63.42	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80725	0.76566	NaN	1	1	Median	1.8326	1.8774	NaN	1	1	Median	134770000	54127000	80645000	0	0	0	0	0	0	65665000	30805000	34860000	69107000	23322000	45785000	47116	2328	44336	284641;284642	381779;381780	381779			2	
SPAAVTEPETNK	1	Unmodified	1242.6092	0.6091959	530	O75449	KATNA1	Katanin p60 ATPase-containing subunit A1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.533	15.47	2	0.02921	12773	160511_QHF_FH_JSI9i_1	47.894	37.37			1.1979	0.96337	NaN	1	1	Median	1.1979	0.96337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11080000	3331000	7748900	11080000	3331000	7748900	0	0	0	0	0	0	0	0	0	47117	530	44337	284643	381781	381781			1	
SPAFVQLAPLSSK	1	Unmodified	1343.7449	0.74490152	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.78		4	3					3		2	1	3	4	72.905	68.965	2	2.21E-09	60470	160511_QHF_FH_JSI12i_3	107.18	89.311			0.92707	0.91214	13.889	9	1	Median	1.0263	0.86324	12.761	2	0	Median	0.72492	0.88346	NaN	1	0	Median	0.90907	0.89548	11.966	3	0	Median	0.92707	1.0293	16.114	3	1	Median	397290000	201960000	195330000	73295000	37935000	35360000	58148000	37172000	20975000	134670000	65954000	68720000	131170000	60900000	70272000	47118	1743	44338	284644;284645;284646;284647;284648;284649;284650;284651;284652;284653	381782;381783;381784;381785;381786;381787;381788;381789;381790;381791;381792;381793	381793			12	
SPAGLQVLNDYLADK	1	Unmodified	1602.8253	0.82533668	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.32	4.83	4	4	8					2	1	3	4	6	6	85.348	83.133	2;3	1.2605E-51	75711	160511_QHF_FH_JSI11i_3	216.84	180.42			1.0065	0.97095	14.704	17	0	Median	1.0572	0.87537	11.186	3	0	Median	0.76302	0.89182	10.654	4	0	Median	1.105	1.0803	10.677	5	0	Median	0.97114	1.0069	22.226	5	0	Median	12467000000	6596000000	5870500000	1531800000	676910000	854920000	2284800000	1299800000	985070000	4443900000	2244500000	2199500000	4205900000	2374900000	1831000000	47119	1245	44339	284654;284655;284656;284657;284658;284659;284660;284661;284662;284663;284664;284665;284666;284667;284668;284669;284670;284671;284672	381794;381795;381796;381797;381798;381799;381800;381801;381802;381803;381804;381805;381806;381807;381808;381809;381810;381811;381812;381813;381814;381815;381816;381817;381818;381819;381820;381821;381822;381823;381824;381825;381826;381827;381828;381829	381796			36	
SPAGSIVHELNPNFQPPK	1	Unmodified	1930.9901	0.9901106	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		8	8							3	5	5	3	64.347	63.787	2;3;4	1.2428E-210	55059	160511_QHF_FH_JSI12i_3	337.34	293.66			0.97401	0.96048	13.221	13	3	Median	1.1324	0.96269	0.32576	2	1	Median	0.74221	0.91474	18.916	4	1	Median	1.0375	0.99016	2.1116	4	1	Median	0.84962	0.87502	13.414	3	0	Median	3806700000	1930900000	1875800000	245340000	101540000	143800000	644280000	350310000	293970000	1735400000	848540000	886880000	1181600000	630460000	551190000	47120	375	44340	284673;284674;284675;284676;284677;284678;284679;284680;284681;284682;284683;284684;284685;284686;284687;284688	381830;381831;381832;381833;381834;381835;381836;381837;381838;381839;381840;381841;381842;381843;381844;381845;381846;381847;381848;381849;381850;381851;381852;381853;381854;381855;381856;381857;381858;381859;381860;381861;381862	381856			33	
SPAGSQQQFGYSPGQQQTHPQGSPR	0	Unmodified	2654.2222	0.22218882	3684	Q8TAP9	MPLKIP	M-phase-specific PLK1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			28.825	27.727	3	1.9837E-06	23931	160511_QHF_FH_JSI9i_2	58.92	55.822			1.0736	1.2826	14.334	3	0	Median	1.4626	1.2826	NaN	1	0	Median	0.97777	1.1435	17.975	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75032000	40330000	34702000	31314000	13853000	17462000	43718000	26477000	17241000	0	0	0	0	0	0	47121	3684	44341	284689;284690;284691	381863;381864;381865;381866	381865			4	
SPAGTTTLTPSSQALTETPTSSDWQSTDATPTLTNSS	0	Unmodified	3738.7232	0.7231822	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.637	82.274	3	0.02758	74956	160511_QHF_FH_JSI11i_1	19.03	17.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11977000	0	11977000	0	0	0	0	0	0	11977000	0	11977000	0	0	0	47122	1688	44342	284692	381867	381867			1	
SPAHLSLIR	0	Unmodified	992.57671	0.57671398	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				31.026	29.621	3	0.016098	24195	160511_QHF_FH_JSI9i_3	31.843	20.969			1.4957	1.1888	NaN	1	0	Median	1.4957	1.1888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169740000	70485000	99260000	169740000	70485000	99260000	0	0	0	0	0	0	0	0	0	47123	602	44343	284693	381868	381868			1	
SPAHYAGYWK	1	Unmodified	1178.5509	0.55089316	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.04			26						12	13	9	6	10	30.898	27.238	2;3	5.6428E-06	21738	160511_QHF_FH_JSI12i_3	121.96	116.99			1.0654	0.98417	27.948	35	12	Median	1.2072	1.009	30.445	12	3	Median	0.9471	1.1145	25.21	8	2	Median	1.0681	1.0187	13.103	6	1	Median	0.82913	0.83184	22.646	9	6	Median	4030700000	1983000000	2047800000	396650000	178660000	217980000	595640000	311040000	284600000	673920000	289850000	384070000	2364500000	1203400000	1161100000	47124	1525	44344	284694;284695;284696;284697;284698;284699;284700;284701;284702;284703;284704;284705;284706;284707;284708;284709;284710;284711;284712;284713;284714;284715;284716;284717;284718;284719;284720;284721;284722;284723;284724;284725;284726;284727;284728;284729;284730;284731	381869;381870;381871;381872;381873;381874;381875;381876;381877;381878;381879;381880;381881;381882;381883;381884;381885;381886;381887;381888;381889;381890;381891;381892;381893;381894;381895;381896;381897;381898;381899;381900;381901;381902;381903;381904;381905;381906;381907;381908;381909;381910	381898			37	
SPAIAAVGPIK	1	Unmodified	1022.6124	0.61243078	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	3	2	48.013	45.304	2	7.9419E-05	26250	160513_QHF_FH_JSI11Kac_4	94.85	60.463			0.9584	1.0007	15.015	11	3	Median	1.4189	1.2178	6.4807	3	3	Median	0.86927	1.0007	14.333	3	0	Median	0.9584	0.93618	7.3338	3	0	Median	0.8008	0.85521	7.3594	2	0	Median	715920000	366400000	349510000	158020000	72620000	85405000	164110000	83991000	80116000	219580000	110880000	108710000	174200000	98915000	75286000	47125	527	44345	284732;284733;284734;284735;284736;284737;284738;284739;284740;284741;284742	381911;381912;381913;381914;381915;381916;381917;381918;381919;381920;381921;381922;381923;381924;381925;381926	381919			16	
SPAISWVNNLEVDSR	0	Unmodified	1685.8373	0.83729835	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	2	1	2	76.488	75.957	2	4.9955E-10	67917	160511_QHF_FH_JSI11i_3	150.68	134.43			1.1837	1.1148	10.564	6	1	Median	1.2524	1.089	NaN	1	0	Median	1.0266	1.2128	18.396	2	1	Median	1.228	1.1413	NaN	1	0	Median	1.0588	1.1296	11.243	2	0	Median	251290000	124740000	126550000	37032000	18510000	18522000	70001000	39616000	30385000	53604000	22076000	31528000	90655000	44537000	46118000	47126	5135	44346	284743;284744;284745;284746;284747;284748	381927;381928;381929;381930;381931;381932;381933;381934	381927			7	
SPAITATLEGK	1	Unmodified	1086.5921	0.59208927	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	40.373	39.313	2	0.013092	33632	160511_QHF_FH_JSI12i_2	44.097	26.712			1.0523	1.067	34.17	4	0	Median	1.3421	1.1416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.262	1.2825	NaN	1	0	Median	0.67614	0.76788	36.97	2	0	Median	220170000	112180000	107990000	49424000	26246000	23178000	0	0	0	84413000	38491000	45922000	86332000	47447000	38885000	47127	3695	44347	284749;284750;284751;284752	381935;381936	381935			2	
SPAITATLEGKNR	1	Acetyl (K)	1398.7467	0.74669243	3695	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	55.375	44.774	2	0.01334	25400	160513_QHF_FH_JSI12Kac_4	53.567	36.935			0.80573	0.92887	4.4895	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7484	0.89985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86746	0.95883	NaN	1	0	Median	21749000	11542000	10207000	0	0	0	9189600	5065300	4124300	0	0	0	12560000	6476900	6082700	47128	3695	44348	284753;284754	381937;381938	381938	2914		1	
SPALKSPLQSVVVR	1	Acetyl (K)	1521.8879	0.88787736	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1		By matching	By matching	By MS/MS	14.8	0.433							1	3			1	1	2	77.942	67.418	2	0.02578	33216	160513_QHF_FH_JSI12Kac_5	47.288	32.869			0.94539	1.0066	11.822	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80236	0.90771	NaN	1	0	Median	1.2038	1.1823	NaN	1	0	Median	0.94539	1.0066	7.8568	2	0	Median	11105000	5546900	5558400	0	0	0	2082600	1252100	830500	5187800	2480900	2706800	3834800	1813800	2021000	47129	5542	44349	284755;284756;284757;284758	381939	381939	3480		1	
SPALQVLR	0	Unmodified	882.5287	0.52870115	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	37.86	37.314	2	0.037165	31120	160511_QHF_FH_JSI10i_3	40.103	13.141			1.2825	1.2896	6.3581	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1088	1.2492	NaN	1	0	Median	1.5212	1.4121	NaN	1	0	Median	1.2825	1.2896	NaN	1	0	Median	204040000	89398000	114650000	0	0	0	31295000	13235000	18060000	78416000	34425000	43991000	94332000	41738000	52594000	47130	4064	44350	284759;284760;284761	381940	381940			1	
SPALSDANK	1	Unmodified	901.45051	0.45051041	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.176	9.795	2	0.0069532	7519	160511_QHF_FH_JSI10i_1	53.968	18.673			0.97207	1.0818	14.446	4	0	Median	1.4274	1.1872	NaN	1	0	Median	0.97524	1.1586	NaN	1	0	Median	0.88195	0.86773	NaN	1	0	Median	0.96891	1.0101	NaN	1	0	Median	674150000	323760000	350390000	150330000	66832000	83494000	177040000	85886000	91150000	193150000	90602000	102540000	153640000	80439000	73202000	47131	1778	44351	284762;284763;284764;284765	381941;381942;381943;381944	381943			4	
SPAMAGGLFAIER	0	Unmodified	1318.6704	0.67035637	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	70.345	69.866	2	0.0013199	60468	160511_QHF_FH_JSI12i_3	74.944	47.829			0.8847	0.75654	11.018	6	3	Linear	0.86658	0.74201	NaN	1	0	Median	0.62132	0.75652	NaN	1	0	Median	0.93905	0.90474	7.2587	2	1	Median	0.91183	0.92876	1.7497	2	2	Median	544450000	293310000	251140000	87021000	47152000	39868000	84553000	56707000	27845000	156490000	80802000	75691000	216390000	108650000	107740000	47132	3301	44352	284766;284767;284768;284769;284770;284771	381945;381946;381947;381948;381949	381949			5	
SPAPKPSDLRPGDVSSK	2	Unmodified	1736.9057	0.90571227	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		25.527	24.649	4	0.0092998	19893	160511_QHF_FH_JSI9i_3	39.657	24.419			0.88103	0.72532	18.141	3	0	Plateau	0.88534	0.72532	NaN	1	0	Median	0.82561	0.96915	NaN	1	0	Median	0.7226	0.69401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	274820000	143780000	131040000	116150000	59348000	56800000	96770000	52734000	44036000	61903000	31694000	30209000	0	0	0	47133	2233	44353	284772;284773;284774	381950;381951;381952	381951			3	
SPAPPLLHVAALGQK	1	Unmodified	1497.8667	0.86674799	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	2	3	62.637	61.766	2;3	1.5222E-10	53088	160511_QHF_FH_JSI12i_3	125.53	117.62			0.93368	0.96197	8.4466	10	0	Median	1.2089	1.0013	5.1936	2	0	Median	0.90722	1.0857	6.2797	3	0	Plateau	1.0163	0.97153	14.399	2	0	Median	0.8726	0.95086	7.3671	3	0	Median	1674100000	873890000	800220000	205500000	87832000	117670000	293850000	156580000	137280000	423720000	237600000	186120000	751030000	391890000	359150000	47134	3499	44354	284775;284776;284777;284778;284779;284780;284781;284782;284783;284784	381953;381954;381955;381956;381957;381958;381959;381960;381961;381962;381963	381961			11	
SPAQILLR	0	Unmodified	896.54435	0.54435122	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	43.288	42.698	2	0.016115	36442	160511_QHF_FH_JSI12i_3	49.833	0			0.87561	0.89013	5.2542	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83189	0.94622	NaN	1	0	Median	0.91512	0.85226	NaN	1	0	Median	0.87561	0.89013	NaN	1	0	Median	496680000	256870000	239810000	0	0	0	128490000	61115000	67376000	158260000	84103000	74153000	209930000	111660000	98278000	47135	1054	44355	284785;284786;284787	381964;381965	381965			2	
SPAQYQVVLSER	0	Unmodified	1375.7096	0.70957864	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	47.067	46.283	2	4.6704E-05	39828	160511_QHF_FH_JSI11i_2	110.66	85.276			2.0424	1.8929	36.923	2	2	Median	1.7209	1.4579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4239	2.4576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	321800000	79796000	242000000	90179000	23849000	66330000	0	0	0	231620000	55947000	175670000	0	0	0	47136	3167	44356	284788;284789;284790	381966;381967;381968	381968			3	
SPASDTYIVFGEAK	1	Unmodified	1483.7195	0.71947463	87	E9PAV3;Q13765	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.63	6.28	8	3	5			2	7	4	1	6	9	8	7	64.14	58.796	2;3	7.3497E-40	54009	160511_QHF_FH_JSI9i_1	199.43	181.16			0.9927	1.0156	35.413	29	4	Median	1.1328	0.94517	7.7415	6	0	Median	0.8728	1.0314	64.741	8	3	Median	1.0227	1.0113	18.419	8	1	Median	0.9927	1.0963	7.5134	7	0	Median	11346000000	5672800000	5673000000	2107600000	914500000	1193100000	2750000000	1491200000	1258800000	3603500000	1809100000	1794500000	2884700000	1458000000	1426600000	47137	87	44357	284791;284792;284793;284794;284795;284796;284797;284798;284799;284800;284801;284802;284803;284804;284805;284806;284807;284808;284809;284810;284811;284812;284813;284814;284815;284816;284817;284818;284819;284820	381969;381970;381971;381972;381973;381974;381975;381976;381977;381978;381979;381980;381981;381982;381983;381984;381985;381986;381987;381988;381989;381990;381991;381992;381993;381994;381995;381996;381997;381998;381999;382000;382001;382002;382003;382004;382005;382006;382007;382008;382009;382010;382011;382012;382013;382014;382015;382016	382003			45	
SPASDTYVVFGEAK	1	Unmodified	1469.7038	0.70382456	242	O15069	NACAD	NAC-alpha domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	60.814	60.321	2	0.0016015	55083	160511_QHF_FH_JSI12i_1	75.849	65.563			0.29522	0.34753	4.3287	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.29522	0.34753	NaN	1	1	Median	0.37508	0.36608	NaN	1	1	Median	0.32071	0.33593	NaN	1	1	Median	497530000	408960000	88573000	0	0	0	193360000	164760000	28594000	142170000	113640000	28527000	162010000	130560000	31452000	47138	242	44358	284821;284822;284823	382017;382018;382019;382020	382018			4	
SPASFEIPASAMEANGVDGDGLNK	1	Unmodified	2376.0904	0.09035451	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.455	79.455	3	0.045621	70928	160511_QHF_FH_JSI11i_3	19.549	5.2393			1.2434	1.1793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2434	1.1793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29399000	13480000	15919000	0	0	0	0	0	0	29399000	13480000	15919000	0	0	0	47139	681	44359	284824	382021	382021			1	
SPASIEVVKPMEAASAILSQADAR	1	Unmodified	2440.2632	0.26317392	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			97.767	97.599	3	9.007E-05	86225	160511_QHF_FH_JSI10i_2	50.029	42.317			1.0163	0.97977	3.9475	3	1	Plateau	1.139	0.97977	NaN	1	0	Median	0.84084	0.99495	5.4397	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	130920000	64734000	66185000	44058000	19424000	24634000	86861000	45310000	41551000	0	0	0	0	0	0	47140	4481	44360	284825;284826;284827	382022;382023;382024;382025;382026;382027	382027			6	
SPATAPK	1	Unmodified	670.36499	0.36498987	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.8243	4.5103	2	0.035999	2439	160511_QHF_FH_JSI10i_1	49.358	24.36			1.007	0.99576	12.11	4	0	Median	1.2925	1.0334	NaN	1	0	Median	1.0227	1.2203	NaN	1	0	Median	0.99145	0.95947	NaN	1	0	Median	0.89723	0.93106	NaN	1	0	Median	1883900000	899760000	984150000	250900000	113630000	137270000	580090000	280530000	299560000	529610000	241560000	288050000	523310000	264050000	259260000	47141	2261	44361	284828;284829;284830;284831	382028;382029;382030;382031	382030			4	
SPAVATSTAAPPPPSSPLPSK	1	Unmodified	1959.0313	0.031306713	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	49.252	48.751	2;3	1.1645E-43	44168	160511_QHF_FH_JSI11i_1	163.27	141.97			0.91421	0.91918	42.519	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.37357	0.43793	NaN	1	1	Median	0.98524	0.95302	NaN	1	0	Median	0.8291	0.87044	NaN	1	0	Median	568500000	356480000	212020000	0	0	0	251150000	192080000	59076000	160530000	84494000	76036000	156820000	79912000	76907000	47142	2505	44362	284832;284833;284834;284835;284836	382032;382033;382034;382035;382036	382033			5	
SPAVKPAAAPK	2	Unmodified	1035.6077	0.60767975	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	9.6334	9.4699	2	0.00091638	6812	160511_QHF_FH_JSI12i_3	84.213	60.058			0.87354	0.79241	14.256	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87354	1.0177	NaN	1	0	Median	0.97167	0.92352	NaN	1	0	Median	0.75273	0.76862	NaN	1	0	Median	424790000	229890000	194900000	0	0	0	45112000	23215000	21897000	129280000	69751000	59525000	250410000	136920000	113480000	47143	2586	44363	284837;284838;284839	382037;382038;382039;382040;382041	382040			5	
SPDDPSR	0	Unmodified	772.33515	0.3351463	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.294	19	2								5	5	5	6	0.57011	0.26417	2	0.010327	37	160511_QHF_FH_JSI12i_1	75.311	58.384			0.97369	0.99192	14.056	21	1	Median	1.315	1.0837	1.4134	5	0	Median	1.0418	1.2589	5.5624	5	0	Median	0.95242	0.91555	4.7814	5	0	Median	0.88421	0.93028	4.4275	6	1	Median	9561400000	4862600000	4698800000	961470000	412930000	548540000	2703100000	1338700000	1364400000	2215800000	1136000000	1079800000	3681100000	1975000000	1706100000	47144	854	44364	284840;284841;284842;284843;284844;284845;284846;284847;284848;284849;284850;284851;284852;284853;284854;284855;284856;284857;284858;284859;284860	382042;382043;382044;382045;382046;382047;382048;382049;382050;382051;382052;382053;382054;382055;382056;382057;382058;382059;382060;382061;382062;382063;382064;382065;382066;382067;382068;382069;382070;382071;382072;382073	382053			32	
SPDDPSRYISPDQLADLYK	1	Unmodified	2179.0433	0.043327963	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	3	1	1	81.259	80.717	3	4.217E-08	73537	160511_QHF_FH_JSI12i_1	106.73	98.741			0.80412	0.8769	83.813	6	4	Median	1.0111	0.83544	NaN	1	0	Median	0.86906	1.0047	12.943	3	3	Median	0.12618	0.12335	NaN	1	1	Median	0.5401	0.56942	NaN	1	0	Median	683170000	415620000	267560000	153580000	74852000	78728000	204320000	103590000	100730000	104190000	93595000	10592000	221090000	143570000	77511000	47145	854	44365	284861;284862;284863;284864;284865;284866	382074;382075;382076;382077;382078;382079;382080;382081;382082;382083;382084;382085;382086	382076			13	
SPDEAYAIAK	1	Unmodified	1063.5186	0.51858998	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		28.317	28.112	2	0.0096836	24453	160511_QHF_FH_JSI9i_1	49.418	22.164			0.86579	0.83285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86579	0.83285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	157090000	83583000	73509000	0	0	0	0	0	0	157090000	83583000	73509000	0	0	0	47146	5223	44366	284867;284868	382087;382088	382088			2	
SPDEAYAIAKK	2	Acetyl (K)	1233.6241	0.62411768	5223	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	2	1	46.9	37.667	2;3	0.0095502	20140	160513_QHF_FH_JSI10Kac_3	69.979	61.25			0.83434	0.86069	19.524	4	0	Median	NaN	NaN	NaN	0	0	Median	0.88525	1.0475	NaN	1	0	Median	0.74158	0.72708	9.2653	2	0	Median	0.87042	0.95423	NaN	1	0	Median	84026000	45015000	39011000	0	0	0	11349000	5830600	5518200	39123000	22864000	16260000	33554000	16321000	17233000	47147	5223	44367	284869;284870;284871;284872	382089;382090;382091;382092;382093	382092	3341		5	
SPDEVTLTSIVPTR	0	Unmodified	1513.7988	0.79878758	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	70.288	69.719	2;3	4.6823E-05	63550	160511_QHF_FH_JSI12i_1	77.279	61.901			0.74975	0.75165	8.6061	6	5	Median	0.91524	0.74201	16.012	2	2	Median	0.63622	0.74774	10.219	2	1	Median	0.75947	0.73692	NaN	1	1	Median	0.74016	0.76667	NaN	1	1	Median	525720000	321360000	204370000	134990000	74421000	60571000	141090000	86231000	54856000	146850000	89830000	57021000	102790000	70873000	31918000	47148	5378	44368	284873;284874;284875;284876;284877;284878;284879;284880;284881	382094;382095;382096;382097;382098;382099;382100;382101;382102;382103	382098			10	
SPDFTNENPLETR	0	Unmodified	1518.6951	0.69505079	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	54.879	52.207	2	4.8075E-11	47411	160511_QHF_FH_JSI11i_1	153.95	151.55			0.9757	0.97312	18.561	5	0	Median	1.219	0.99388	NaN	1	0	Median	0.80782	0.9706	NaN	1	0	Median	0.9757	0.9491	NaN	1	0	Median	1.1141	1.1956	29.12	2	0	Median	2654200000	1368600000	1285500000	680430000	304670000	375760000	600150000	327340000	272810000	686730000	370400000	316330000	686860000	366200000	320660000	47149	821	44369	284882;284883;284884;284885;284886	382104;382105;382106;382107;382108;382109;382110;382111;382112;382113;382114	382105			11	
SPDLAPTPAPQSTPR	0	Unmodified	1533.7787	0.77872084	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	1	2	35.768	35.16	2	1.5783E-07	31410	160511_QHF_FH_JSI10i_1	93.162	67.354			1.6477	1.6363	60.655	4	0	Median	1.1962	0.97845	NaN	1	0	Median	2.2697	2.6609	NaN	1	0	Median	3.0939	3.0029	NaN	1	0	Median	0.984	1.0062	NaN	1	0	Median	356220000	132310000	223910000	105010000	45530000	59478000	88101000	25490000	62610000	81677000	19545000	62132000	81439000	41744000	39695000	47150	4535	44370	284887;284888;284889;284890;284891;284892	382115;382116;382117;382118;382119;382120	382118			5	
SPDLLMYQGPPDTAEIIK	1	Unmodified	1986.9972	0.99722939	2109	P82909	MRPS36	28S ribosomal protein S36, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		88.486	88.059	2	1.1307E-06	78293	160511_QHF_FH_JSI9i_1	128.9	106.37			0.99188	0.86046	5.3963	3	1	Plateau	1.0662	0.87534	NaN	1	0	Median	0.72262	0.86046	NaN	1	0	Median	0.99188	0.95177	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93239000	50737000	42502000	24134000	13195000	10938000	36899000	22189000	14710000	32206000	15352000	16854000	0	0	0	47151	2109	44371	284893;284894;284895	382121;382122;382123;382124	382123			4	
SPDMLAHFR	0	Unmodified	1072.5124	0.51239916	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	41.52	40.899	3	0.016609	35861	160511_QHF_FH_JSI11i_3	57.032	48.5			0.86464	0.79894	21.715	5	0	Median	0.95752	0.80558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81688	0.77808	3.741	2	0	Median	0.89976	0.96177	37.179	2	0	Median	357900000	176890000	181010000	40588000	17707000	22880000	0	0	0	155320000	84149000	71169000	162000000	75036000	86960000	47152	369	44372	284896;284897;284898;284899;284900	382125;382126	382125			0	
SPDMLAHFRK	1	Unmodified	1200.6074	0.60736218	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		34.934	33.789	3;4	0.00050183	29010	160511_QHF_FH_JSI11i_3	60.518	53.859			1.1876	1.1241	40.879	5	0	Median	0.98659	0.79366	58.149	2	0	Median	1.1609	1.3202	25.361	2	0	Median	1.1876	1.1241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141210000	79351000	61861000	48534000	31445000	17088000	55289000	28999000	26290000	37389000	18907000	18483000	0	0	0	47153	369	44373	284901;284902;284903;284904;284905;284906	382127;382128;382129;382130;382131	382127			5	
SPDPGIVPQEAPVGNSLSELSEENFDGK	1	Unmodified	2911.3723	0.37232625	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	89.504	88.959	3	3.429E-10	80998	160511_QHF_FH_JSI11i_1	71.528	68.313			1.5589	1.4879	17.823	3	2	Plateau	1.3767	1.1233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5589	1.4879	NaN	1	0	Median	1.4768	1.5631	NaN	1	1	Median	60352000	20811000	39541000	16118000	4352500	11765000	0	0	0	22267000	8454600	13813000	21967000	8004300	13963000	47154	235	44374	284907;284908;284909	382132;382133;382134;382135	382132			4	
SPDSATVSGYDIMK	1	Unmodified	1469.6708	0.67080988	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.841	50.426	2	0.00023038	45622	160511_QHF_FH_JSI11i_1	72.289	57.87			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47155	3165	44375	284910	382136	382136			1	
SPDTILQK	1	Unmodified	900.49165	0.49164694	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			25.337	25.043	2	0.011461	21867	160511_QHF_FH_JSI10i_1	54.157	27.555			0.93377	1.0777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93377	1.0777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1253400000	716550000	536890000	0	0	0	1253400000	716550000	536890000	0	0	0	0	0	0	47156	1169	44376	284911	382137	382137			1	
SPDTNYLFMGDYVDR	0	Unmodified	1791.7774	0.77740021	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								3	3	2	2	78.844	78.32	2;3	7.9559E-81	71346	160511_QHF_FH_JSI11i_1	246.53	228.72			1.0217	0.98235	11.723	10	0	Median	1.1281	0.90879	18.567	3	0	Median	0.811	0.93326	3.1557	3	0	Plateau	1.0102	0.97722	3.4689	2	0	Median	1.0917	1.1547	6.39	2	0	Median	1474600000	716390000	758240000	291040000	135910000	155130000	466840000	244460000	222380000	396010000	176820000	219190000	320730000	159190000	161540000	47157	2014;2065	44377	284912;284913;284914;284915;284916;284917;284918;284919;284920;284921	382138;382139;382140;382141;382142;382143;382144;382145;382146;382147;382148;382149;382150;382151;382152;382153	382139			16	
SPDVGLYGVIPECGETYHSDLAEAK	1	Unmodified	2706.2483	0.24831171	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.688	76.208	3	3.906E-17	69340	160511_QHF_FH_JSI11i_1	124.45	117.79			0.88443	0.96851	31.021	4	0	Median	0.80079	0.67542	NaN	1	0	Median	0.91069	1.1016	NaN	1	0	Median	0.85894	0.85147	NaN	1	0	Median	1.3374	1.3805	NaN	1	0	Median	316910000	154390000	162520000	36602000	20433000	16169000	66782000	33701000	33081000	102510000	53622000	48890000	111020000	46637000	64380000	47158	1600	44378	284922;284923;284924;284925	382154;382155;382156;382157	382155			3	
SPEDLER	0	Unmodified	844.39266	0.39266118	856	P06744;Q8N196	GPI;SIX5	Glucose-6-phosphate isomerase;Homeobox protein SIX5	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	5.91	3	2				3	1				3	3	3	12.683	9.2568	2	0.0083872	6004	160513_QHF_FH_JSI12Kac_3	87.323	34.639			0.96913	1.047	9.3181	9	0	Median	NaN	NaN	NaN	0	0	Median	0.88922	1.2405	7.8531	3	0	Plateau	1.0244	0.99778	9.5301	3	0	Median	0.96913	1.0274	2.7418	3	0	Median	11621000000	6062600000	5557900000	0	0	0	4939200000	2753500000	2185700000	3421300000	1575700000	1845600000	3260000000	1733400000	1526600000	47159	856	44379	284926;284927;284928;284929;284930;284931;284932;284933;284934	382158;382159;382160;382161;382162	382161			5	
SPEDLERLLPHK	1	Unmodified	1432.7674	0.76742787	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		62.616	62.143	4	0.00053571	55085	160511_QHF_FH_JSI11i_3	71.176	59.01			12.605	10.788	NaN	1	1	Median	12.605	10.788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38686000	28295000	10390000	10756000	365590	10390000	0	0	0	27930000	27930000	0	0	0	0	47160	856	44380	284935;284936	382163;382164	382163			2	
SPEEGAETPVYLALLPPDAEGPHGQFVSEK	1	Unmodified	3163.535	0.53497491	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.627	8	5	1							2	4	3	5	93.186	92.833	3;4	9.1781E-51	84174	160511_QHF_FH_JSI10i_1	174.86	167.19			1.0226	1.0302	14.629	14	4	Median	1.1991	1.0252	1.567	2	0	Median	0.88433	1.0611	8.5022	4	2	Median	1.0084	0.99171	13.286	3	0	Median	1.0387	1.0239	22.264	5	2	Median	1517900000	769580000	748350000	144500000	61063000	83440000	507600000	293710000	213880000	383630000	195310000	188320000	482210000	219500000	262710000	47161	1092	44381	284937;284938;284939;284940;284941;284942;284943;284944;284945;284946;284947;284948;284949;284950	382165;382166;382167;382168;382169;382170;382171;382172;382173;382174;382175;382176;382177;382178;382179;382180;382181;382182;382183;382184;382185;382186;382187;382188;382189;382190;382191;382192;382193;382194;382195;382196;382197;382198;382199;382200;382201;382202;382203;382204;382205;382206;382207	382186			43	
SPEGLLGVLGHMLSGK	1	Unmodified	1593.8549	0.85486267	529	O75448	MED24	Mediator of RNA polymerase II transcription subunit 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	102.24	102.13	3	1.836E-05	83034	160511_QHF_FH_JSI9i_3	88.427	77.148			0.90569	0.93495	6.5046	3	1	Plateau	1.0997	0.90595	NaN	1	0	Median	0.78675	0.93495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0426	1.0266	NaN	1	1	Median	229000000	120290000	108710000	21957000	11230000	10726000	77710000	43634000	34076000	0	0	0	129340000	65427000	63909000	47162	529	44382	284951;284952;284953;284954	382208;382209;382210;382211;382212	382211			5	
SPELQEEFGYNAETQK	1	Unmodified	1868.8428	0.84283724	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.202	51.53	2	1.3088E-10	45675	160511_QHF_FH_JSI9i_1	151.74	138.31			1.0052	0.98302	7.337	4	0	Median	1.1217	0.90127	NaN	1	0	Median	0.84291	1.0085	NaN	1	0	Median	0.99966	0.95816	NaN	1	0	Median	1.0108	1.0707	NaN	1	0	Median	179640000	101060000	78577000	39581000	19371000	20210000	54548000	31724000	22824000	40286000	22841000	17445000	45226000	27129000	18098000	47163	1795	44383	284955;284956;284957;284958	382213;382214;382215;382216;382217;382218;382219;382220;382221	382221			9	
SPELVQAMFPK	1	Unmodified	1245.6427	0.64274463	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	1	2	71.045	70.258	2;3	5.8563E-06	60676	160511_QHF_FH_JSI12i_2	110.53	47.115			0.93426	0.89607	13.913	6	1	Median	0.98248	0.84465	7.4586	2	1	Median	0.675	0.81984	13.474	2	0	Median	1.0293	1.0417	NaN	1	0	Median	0.91982	1.0582	NaN	1	0	Median	640310000	346230000	294080000	134490000	67572000	66920000	177190000	106080000	71110000	195680000	100740000	94937000	132950000	71832000	61115000	47164	5227	44384	284959;284960;284961;284962;284963;284964;284965	382222;382223;382224;382225;382226;382227;382228;382229;382230;382231;382232;382233;382234;382235	382224			14	
SPENTEGKDGSK	2	Acetyl (K)	1289.5735	0.57353867	2696	Q15651	HMGN3	High mobility group nucleosome-binding domain-containing protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.3	0.471					2	1					1	1	1	7.7188	0.51096	2	0.051625	2895	160513_QHF_FH_JSI12Kac_3	42.001	30.85			1.102	1.1614	26.997	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84441	0.95388	NaN	1	0	Median	1.4381	1.4141	NaN	1	0	Median	0.76825	0.84332	NaN	1	0	Median	186420000	86702000	99715000	0	0	0	84950000	48416000	36534000	94164000	34342000	59822000	7302000	3943600	3358300	47165	2696	44385	284966;284967;284968	382236	382236			1	
SPENVIETISSLLASVTLDLSQYAMDIVK	1	Oxidation (M)	3151.621	0.62101272	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			107.38	101.66	3	1.4018E-20	60218	160513_QHF_FH_JSI10Kac_6	114.31	105.56			1.5836	1.813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5836	1.813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84503000	37631000	46872000	0	0	0	84503000	37631000	46872000	0	0	0	0	0	0	47166	3860	44386	284969	382237	382237		2314	1	
SPENVIETISSLLASVTLDLSQYAMDIVK	1	Unmodified	3135.6261	0.6260981	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			107.85	102.13	3	3.0809E-22	60446	160513_QHF_FH_JSI10Kac_6	162.07	144.28			0.80268	0.96384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80268	0.96384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41292000	27679000	13613000	0	0	0	41292000	27679000	13613000	0	0	0	0	0	0	47167	3860	44386	284970	382238	382238			1	
SPEQQLSATQK	1	Unmodified	1215.6095	0.60953025	1767	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	14.724	14.275	2	2.8966E-09	11649	160511_QHF_FH_JSI9i_1	127.42	104			1.0601	0.92572	25.739	5	1	Median	1.1288	0.92572	NaN	1	0	Median	0.65647	0.77166	NaN	1	0	Median	1.0601	1.0293	NaN	1	0	Median	0.9947	1.0492	44.199	2	1	Median	636620000	310790000	325830000	123190000	49907000	73283000	141740000	70238000	71500000	125100000	61790000	63308000	246600000	128850000	117740000	47168	1767	44387	284971;284972;284973;284974;284975	382239;382240;382241;382242;382243	382243			5	
SPETGTAGGSSTASYSAGR	0	Unmodified	1742.7707	0.77073493	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	15.428	14.983	2	3.2307E-09	12682	160511_QHF_FH_JSI12i_1	119.39	90.045			1.1884	1.2473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1884	1.2473	NaN	1	0	Median	20639000	10325000	10314000	0	0	0	0	0	0	0	0	0	20639000	10325000	10314000	47169	3653	44388	284976;284977	382244;382245	382244			2	
SPEVLLGSAR	0	Unmodified	1027.5662	0.56620887	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.87	6.4	4	4	1				2	4		4	3	4	4	42.43	37.543	2	5.2838E-06	32248	160511_QHF_FH_JSI11i_2	108.98	66.868			1.0158	1.0424	13.385	14	1	Median	1.2275	1.0094	16.287	3	1	Median	0.7587	0.93332	13.635	3	0	Median	1.0593	1.0564	14.118	4	0	Median	1.0158	1.0821	11.771	4	0	Median	2897100000	1510000000	1387100000	446770000	188640000	258130000	741340000	432630000	308700000	1023400000	513530000	509910000	685580000	375190000	310390000	47170	850	44389	284978;284979;284980;284981;284982;284983;284984;284985;284986;284987;284988;284989;284990;284991;284992	382246;382247;382248;382249;382250;382251;382252;382253;382254;382255;382256;382257;382258;382259;382260;382261;382262;382263;382264	382259			19	
SPFAYCMMIR	0	Unmodified	1274.561	0.56100561	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	75.181	66.752	2	0.0025471	34850	160513_QHF_FH_JSI12Kac_6	73.665	56.229			0.70745	0.68202	38.732	3	1	Median	NaN	NaN	NaN	0	0	Median	0.54177	0.63934	NaN	1	1	Median	0.70745	0.68202	NaN	1	0	Median	1.182	1.2885	NaN	1	0	Median	109540000	70932000	38609000	0	0	0	46781000	29776000	17005000	46321000	33085000	13236000	16438000	8070900	8367500	47171	5708	44390	284993;284994;284995	382265;382266;382267;382268	382267			4	
SPFEVQVGPEAGMQK	1	Unmodified	1602.7712	0.77119262	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								2	2	2	2	59.494	58.785	2;3	7.0209E-07	52197	160511_QHF_FH_JSI9i_1	140.01	122.54			0.72602	0.90049	48.825	8	3	Linear	1.06	0.87038	4.9776	2	1	Median	1.4176	1.7081	90.702	2	1	Median	1.0689	1.0434	8.9391	2	1	Median	0.71913	0.74811	25.066	2	0	Median	939750000	475560000	464180000	233830000	108470000	125360000	136700000	63830000	72868000	299770000	157140000	142630000	269450000	146130000	123330000	47172	512	44391	284996;284997;284998;284999;285000;285001;285002;285003	382269;382270;382271;382272;382273;382274;382275;382276;382277;382278;382279	382278			11	
SPFEVSVDK	1	Unmodified	1006.4971	0.49712625	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.071	40.428	2	0.0009624	35859	160511_QHF_FH_JSI9i_1	82.645	57.722			1.5916	1.5342	42.754	3	3	Median	1.3564	1.094	NaN	1	1	Median	2.1642	2.5576	NaN	1	1	Median	1.5916	1.5342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1379500000	411070000	968400000	264020000	87819000	176200000	549430000	149400000	400040000	566020000	173850000	392170000	0	0	0	47173	512	44392	285004;285005;285006	382280;382281;382282	382282			3	
SPFEVYVDK	1	Unmodified	1082.5284	0.52842638	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	3	2	2	51.554	50.603	2	1.5615E-05	46180	160511_QHF_FH_JSI12i_1	122.13	88.338			0.87365	0.97966	6.6968	9	1	Median	1.1699	0.96784	5.915	2	0	Median	0.86273	1.0013	3.6232	3	0	Median	0.95642	0.95779	14.385	2	0	Median	0.86305	0.93209	2.4074	2	1	Median	3597500000	1868800000	1728600000	420800000	160960000	259850000	1031700000	547390000	484300000	1158400000	591990000	566420000	986570000	568500000	418070000	47174	1192	44393	285007;285008;285009;285010;285011;285012;285013;285014;285015	382283;382284;382285;382286;382287;382288;382289;382290;382291;382292;382293;382294;382295;382296;382297;382298;382299;382300;382301;382302;382303	382289			21	
SPFLQVFNNSPDESSYYR	0	Unmodified	2148.9752	0.9752484	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	81.043	80.626	2	5.3008E-11	71945	160511_QHF_FH_JSI11i_3	144.27	128.51			0.95631	1.0267	12.689	5	4	Median	0.95631	0.82109	NaN	1	1	Median	0.85227	1.0166	15.738	2	2	Median	1.109	1.0267	NaN	1	1	Median	1.003	1.0396	NaN	1	0	Median	126840000	56759000	70076000	20157000	8107300	12050000	31248000	17040000	14208000	44422000	19394000	25028000	31009000	12219000	18790000	47175	2675	44394	285016;285017;285018;285019;285020;285021;285022	382304;382305;382306;382307;382308;382309;382310	382304			7	
SPFNSPSPQDSPR	0	Unmodified	1414.6477	0.64770667	912	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	27.714	27.132	2	0.00011525	24216	160511_QHF_FH_JSI12i_1	89.548	79.024			1.1902	1.1608	14.263	4	3	Median	1.4235	1.1843	NaN	1	1	Median	0.77712	0.9044	NaN	1	1	Median	1.277	1.2509	NaN	1	1	Median	1.1092	1.1377	NaN	1	0	Median	183450000	74912000	108540000	44952000	13325000	31627000	50058000	26141000	23917000	41120000	16636000	24484000	47323000	18810000	28513000	47176	912	44395	285023;285024;285025;285026;285027	382311;382312;382313;382314;382315;382316	382313			6	
SPFSVAVSPSLDLSK	1	Unmodified	1532.8086	0.80862399	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.9	9	8	4					4		8	7	5	5	80.017	77.685	2;3	5.4497E-30	69602	160511_QHF_FH_JSI9i_2	233.32	195.84			0.94635	0.97966	14.56	25	2	Median	1.208	1.0236	13.357	8	2	Median	0.77933	0.94977	9.8823	7	0	Median	0.92309	0.91322	9.7113	5	0	Median	0.95532	0.99125	20.091	5	0	Median	3478300000	1781400000	1696900000	669070000	304950000	364130000	1000500000	547840000	452660000	1004100000	534080000	470020000	804630000	394520000	410110000	47177	1192	44396	285028;285029;285030;285031;285032;285033;285034;285035;285036;285037;285038;285039;285040;285041;285042;285043;285044;285045;285046;285047;285048;285049;285050;285051;285052	382317;382318;382319;382320;382321;382322;382323;382324;382325;382326;382327;382328;382329;382330;382331;382332;382333;382334;382335;382336;382337;382338;382339;382340;382341;382342;382343;382344;382345;382346;382347;382348;382349;382350;382351;382352;382353;382354;382355;382356;382357;382358;382359;382360;382361;382362;382363;382364;382365;382366;382367;382368;382369;382370	382355			54	
SPFSVHPK	1	Unmodified	897.47085	0.47085192	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			5								2	1	2	16.214	15.835	2;3	0.0087012	12376	160511_QHF_FH_JSI12i_3	56.721	29.759			0.99929	1.1285	19.641	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0034	1.1391	1.3132	2	0	Median	0.85199	0.79265	NaN	1	0	Median	1.014	1.0387	25.595	2	0	Median	610920000	307240000	303680000	0	0	0	97003000	47366000	49636000	157620000	74226000	83392000	356300000	185650000	170650000	47178	1669	44397	285053;285054;285055;285056;285057	382371;382372	382372			2	
SPFTVGVAAPLDLSK	1	Unmodified	1500.8188	0.81879474	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	3.82	8	1	2					1		3	3	4	2	83.772	82.305	2;3	9.125E-40	75461	160511_QHF_FH_JSI10i_1	199.27	174.93			0.93471	0.9694	12.031	11	3	Median	1.2079	0.98282	5.6364	3	2	Median	0.85001	0.99659	3.9129	2	0	Median	0.91032	0.88372	19.962	4	1	Median	0.91769	0.96015	10.058	2	0	Median	570830000	295910000	274910000	80000000	37612000	42387000	193610000	113720000	79893000	167220000	77926000	89295000	129990000	66653000	63339000	47179	512	44398	285058;285059;285060;285061;285062;285063;285064;285065;285066;285067;285068;285069	382373;382374;382375;382376;382377;382378;382379;382380;382381;382382;382383;382384;382385	382380			13	
SPGADLLQVLTK	1	Unmodified	1240.7027	0.70270235	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	85.808	85.325	2	2.96E-14	74121	160511_QHF_FH_JSI12i_3	134.13	108.19			1.0951	1.0679	9.0392	6	0	Median	1.2015	1.0406	NaN	1	0	Median	0.90763	1.1397	NaN	1	0	Median	1.0951	1.0532	1.3006	2	0	Median	1.1079	1.1885	14.486	2	0	Median	699760000	334080000	365680000	79056000	33637000	45419000	105290000	52273000	53017000	241260000	122040000	119220000	274160000	126130000	148020000	47180	2817	44399	285070;285071;285072;285073;285074;285075;285076	382386;382387;382388;382389;382390;382391;382392;382393;382394;382395;382396;382397	382397			12	
SPGAPGPLTLK	1	Unmodified	1036.5917	0.59169534	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	41.822	41.084	2	0.0016883	36759	160511_QHF_FH_JSI10i_1	61.765	47.627			0.87359	0.85866	6.5478	6	0	Median	0.9951	0.8084	NaN	1	0	Median	0.69102	0.81667	NaN	1	0	Median	0.87359	0.85866	5.0004	2	0	Median	0.87005	0.93116	0.93619	2	0	Median	870030000	513770000	356260000	69319000	37827000	31492000	216350000	142930000	73416000	321380000	179830000	141550000	262980000	153170000	109810000	47181	2723	44400	285077;285078;285079;285080;285081;285082	382398;382399;382400;382401;382402;382403;382404;382405;382406	382404			9	
SPGAQLWLFPSAAGLHR	0	Unmodified	1806.9529	0.95293723	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		83.225	73.909	3	0.0041382	40824	160513_QHF_FH_JSI11Kac_6	49.425	39.676			1.6644	1.6466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6644	1.6466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15959000	5690200	10269000	0	0	0	0	0	0	15959000	5690200	10269000	0	0	0	47182	5332	44401	285083	382407	382407			1	
SPGHMVILDQTK	1	Unmodified	1324.6809	0.68092105	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0			By MS/MS		3	0			3									3		33.234	33.234	2;3	0.00036127	28822	160511_QHF_FH_JSI11i_3	73.781	55.962			0.70596	0.65339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70596	0.65339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28669000	16596000	12073000	0	0	0	0	0	0	28669000	16596000	12073000	0	0	0	47183	5066	44402	285084;285085;285086	382408;382409;382410	382410			3	
SPGIIFIPGYLSYMNGTK	1	Unmodified	1957.0019	0.0019208405	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	3	2	2	1	96.256	91.417	2;3	8.7071E-24	47573	160513_QHF_FH_JSI11Kac_6	153.09	139.41			0.9475	0.99922	26.257	6	1	Median	1.2601	1.0724	39.746	2	1	Median	0.97194	1.1346	10.347	2	0	Median	0.75925	0.69587	NaN	1	0	Median	0.94081	0.94677	NaN	1	0	Median	732560000	422410000	310150000	195610000	97256000	98351000	185790000	76237000	109560000	177500000	150380000	27112000	173660000	98533000	75130000	47184	5002	44403	285087;285088;285089;285090;285091;285092;285093;285094	382411;382412;382413;382414;382415;382416;382417;382418;382419;382420	382413			10	
SPGLVLCHGGIFVPFLR	0	Unmodified	1868.0131	0.013094649	2798	Q2T9J0	TYSND1	Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		88.508	82.79	3	4.4121E-05	46825	160513_QHF_FH_JSI10Kac_6	76.795	65.515			0.99915	1.1706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99915	1.1706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68940000	43831000	25110000	0	0	0	68940000	43831000	25110000	0	0	0	0	0	0	47185	2798	44404	285095;285096	382421;382422	382422			2	
SPGPPALKHPATK	2	Acetyl (K)	1341.7405	0.74048484	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	34.191	25.29	3	0.031442	14168	160513_QHF_FH_JSI11Kac_6	30.133	26.489			0.78754	0.82986	18.704	4	0	Median	0.76996	0.67937	NaN	1	0	Median	0.80553	0.95626	NaN	1	0	Median	0.7406	0.72016	NaN	1	0	Median	0.84877	0.97247	NaN	1	0	Median	14747000	7305900	7440700	3039500	1629400	1410100	3794400	1845600	1948900	5271200	2729200	2542100	2641500	1101800	1539700	47186	3391	44405	285097;285098;285099;285100	382423	382423			1	
SPGQPIQVVYVPSHLYHMVFELFK	1	Unmodified	2814.4567	0.45672877	2630	Q15118	PDK1	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									4	1		3		97.551	88.22	4	2.2281E-14	50453	160513_QHF_FH_JSI9Kac_6	103.75	93.058			1.4106	1.3425	9.4252	4	2	Median	1.3456	1.169	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4415	1.384	5.5535	3	2	Median	NaN	NaN	NaN	0	0	Median	710320000	332340000	377980000	251830000	122950000	128870000	0	0	0	458500000	209390000	249110000	0	0	0	47187	2630	44406	285101;285102;285103;285104	382424;382425;382426;382427	382426			4	
SPGVAAAVAEDGGLK	1	Unmodified	1340.6936	0.69359423	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.423	44.919	2	0.002252	38642	160511_QHF_FH_JSI11i_2	70.488	61.056			1.4804	1.3916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4804	1.3916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16605000	5122600	11483000	0	0	0	0	0	0	16605000	5122600	11483000	0	0	0	47188	4418	44407	285105	382428	382428			1	
SPGVAAAVAEDGGLKK	2	Unmodified	1468.7886	0.78855725	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	36.593	36.52	3	0.018468	31889	160511_QHF_FH_JSI11i_3	37.645	32.366			0.79419	0.77117	46.071	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59848	0.55676	NaN	1	1	Median	1.0539	1.0682	NaN	1	1	Median	120280000	77355000	42925000	0	0	0	0	0	0	85712000	62095000	23617000	34568000	15260000	19308000	47189	4418	44408	285106;285107	382429;382430	382429			2	
SPHFFQPTNQQFK	1	Unmodified	1604.7736	0.77357588	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	2	1	1	1	43.957	42.909	2;3	0.00028231	37413	160511_QHF_FH_JSI11i_3	64.827	54.212			1.7778	1.1387	29.961	3	0	Plateau	1.2966	1.0552	NaN	1	0	Median	0.98417	1.1387	NaN	1	0	Median	1.983	1.8341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	234340000	101860000	132480000	81094000	34839000	46255000	65711000	38122000	27589000	87532000	28896000	58636000	0	0	0	47190	4076	44409	285108;285109;285110;285111;285112	382431;382432;382433;382434;382435	382432			5	
SPHFQVVNEETPK	1	Unmodified	1510.7416	0.74160705	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									3	1	31.784	31.758	2;3	1.4349E-05	27546	160511_QHF_FH_JSI11i_3	88.075	76.156			0.91272	0.86934	26.152	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74849	0.69443	31.77	2	0	Median	0.8701	0.87568	NaN	1	0	Median	276680000	143950000	132730000	0	0	0	0	0	0	155720000	81330000	74387000	120970000	62619000	58347000	47191	5599	44410	285113;285114;285115;285116	382436;382437;382438;382439;382440	382436			5	
SPHIETYLK	1	Unmodified	1086.571	0.5709599	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	32.524	31.606	3	0.00017006	26981	160511_QHF_FH_JSI12i_2	67.726	51.588			0.91684	0.92177	12.419	3	1	Plateau	0.91684	0.80296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.037	1.0139	NaN	1	0	Median	0.77497	0.83802	NaN	1	0	Median	105740000	49414000	56329000	31361000	16488000	14874000	0	0	0	41872000	17075000	24796000	32510000	15851000	16659000	47192	2471	44411	285117;285118;285119	382441;382442;382443	382441			3	
SPHLEKFHQFLVSETESGNISR	1	Acetyl (K)	2583.2718	0.27176477	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		77.639	68.322	3;4	8.5065E-12	37327	160513_QHF_FH_JSI11Kac_6	163.18	149.73			0.15562	0.15341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15562	0.15341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49561000	48256000	1305100	0	0	0	0	0	0	49561000	48256000	1305100	0	0	0	47193	2282	44412	285120;285121	382444;382445	382445	2378		2	
SPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK	1	Unmodified	3962.0473	0.047254909	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.134	78.134	4	1.5183E-12	69775	160511_QHF_FH_JSI11i_3	65.021	60.26			0.90406	0.83722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90406	0.83722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38614000	21503000	17111000	0	0	0	0	0	0	38614000	21503000	17111000	0	0	0	47194	2385	44413	285122	382446;382447	382446			2	
SPHQLLSPSSFSPSATPSQK	1	Unmodified	2082.0382	0.038183005	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		52.197	51.146	3	1.2769E-06	41925	160511_QHF_FH_JSI9i_3	87.963	84.244			0.7938	0.91522	17.875	3	0	Median	1.3227	1.0727	NaN	1	0	Median	0.7938	0.91522	NaN	1	0	Median	0.79188	0.75082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218310000	108400000	109910000	65282000	28916000	36366000	98894000	49261000	49632000	54131000	30218000	23913000	0	0	0	47195	2510	44414	285123;285124;285125	382448;382449;382450;382451;382452	382451			5	
SPHVFYR	0	Unmodified	904.45554	0.45553621	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			19.764	15.694	3	0.014151	9261	160513_QHF_FH_JSI10Kac_6	46.426	31.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47196	3921	44415	285126;285127	382453;382454	382454			2	
SPIAEAVFR	0	Unmodified	988.53418	0.53418046	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				49.614	48.56	2	0.027502	42427	160511_QHF_FH_JSI9i_2	40.724	20.204			1.0989	0.94091	NaN	1	0	Median	1.0989	0.94091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114090000	61612000	52477000	114090000	61612000	52477000	0	0	0	0	0	0	0	0	0	47197	1247	44416	285128	382455	382455			1	
SPIAEAVFRK	1	Unmodified	1116.6291	0.62914348	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		38.731	38.731	3	0.0075367	33995	160511_QHF_FH_JSI11i_3	46.352	32.999			1.0072	0.96217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0072	0.96217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	184450000	77386000	107060000	0	0	0	0	0	0	184450000	77386000	107060000	0	0	0	47198	1247	44417	285129	382456	382456			1	
SPIAPEELALVHNLR	0	Unmodified	1657.9152	0.91515474	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.139	72.189	3	7.0444E-05	63181	160511_QHF_FH_JSI11i_2	62.759	56.322			0.63163	0.65843	23.849	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55844	0.55625	NaN	1	0	Median	0.7144	0.77938	NaN	1	0	Median	76568000	39054000	37514000	0	0	0	0	0	0	53936000	26388000	27549000	22631000	12666000	9965200	47199	1733	44418	285130;285131	382457;382458	382458			2	
SPIAPEELALVHNLRK	1	Unmodified	1786.0101	0.010117761	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		64.8	63.677	3	4.4377E-05	52416	160511_QHF_FH_JSI9i_3	71.98	58.862			0.8511	0.88281	12.663	4	2	Median	1.2667	1.0352	NaN	1	0	Median	0.7228	0.83934	12.725	2	2	Median	0.91259	0.84864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	281620000	139700000	141910000	60469000	26627000	33842000	122690000	68170000	54516000	98462000	44905000	53556000	0	0	0	47200	1733	44419	285132;285133;285134;285135	382459;382460;382461;382462	382462			4	
SPIEFLENAYEK	1	Unmodified	1438.698	0.6980109	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		79.234	78.559	2	0.00064634	69047	160511_QHF_FH_JSI11i_2	81.525	61.918			0.85521	0.95032	9.9505	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83976	1.0196	NaN	1	0	Median	0.87094	0.88575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106180000	56497000	49685000	0	0	0	43391000	22316000	21075000	62792000	34181000	28610000	0	0	0	47201	2771	44420	285136;285137	382463;382464	382463			2	
SPIIFIGTGEHIDDFEPFK	1	Unmodified	2161.0732	0.073171528	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.25	0.433		3	1								1	2	1	100.63	100.52	3	5.5764E-11	88195	160511_QHF_FH_JSI11i_2	131.11	118.08			0.75569	0.82863	26.958	4	1	Median	NaN	NaN	NaN	0	0	Median	0.7843	0.97442	NaN	1	0	Median	0.71042	0.68522	3.9547	2	1	Median	1.0394	1.1755	NaN	1	0	Median	223170000	120700000	102470000	0	0	0	27653000	15698000	11955000	103620000	55659000	47960000	91896000	49342000	42555000	47202	1929	44421	285138;285139;285140;285141	382465;382466;382467	382466			3	
SPIIKPLIPK	2	Acetyl (K)	1146.7376	0.7376313	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS			15	0								2		1	1			77.722	67.263	2	0.011759	33533	160513_QHF_FH_JSI10Kac_5	65.305	56.091			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4069700	4069700	0	1695300	1695300	0	2374400	2374400	0	0	0	0	0	0	0	47203	560	44422	285142;285143	382468;382469	382469	293		2	
SPILLGSLAHQIYR	0	Unmodified	1566.8882	0.88821171	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.69			2						11	4	4	2	3	78.41	71.595	2;3	5.4175E-44	39175	160513_QHF_FH_JSI10Kac_6	244.71	208.39			0.89868	0.94648	38.403	10	6	Median	1.375	1.1762	43.984	3	2	Plateau	0.9296	1.0942	37.9	4	3	Median	0.7158	0.67437	27.54	2	1	Median	1.1528	1.2396	NaN	1	0	Median	2316200000	1229300000	1086900000	923830000	447010000	476820000	1022700000	577960000	444750000	219500000	135810000	83696000	150100000	68477000	81628000	47204	1380	44423	285144;285145;285146;285147;285148;285149;285150;285151;285152;285153;285154;285155;285156	382470;382471;382472;382473;382474;382475;382476;382477;382478;382479;382480;382481;382482;382483;382484;382485	382485			16	
SPILVATAVAAR	0	Unmodified	1167.6976	0.69755739	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.42		5	4				1	4	3	4	4	5	4	61.149	56.101	2	5.8176E-08	29525	160513_QHF_FH_JSI9Kac_5	110.38	72.654			1.085	1.0898	14.609	16	3	Median	1.2063	0.99424	12.431	3	0	Plateau	0.83555	0.98892	11.282	4	0	Median	1.2478	1.1915	19.4	5	3	Median	1.0105	1.1129	11.652	4	0	Median	1772800000	876040000	896790000	462760000	218660000	244100000	459550000	252340000	207210000	559380000	260640000	298730000	291140000	144400000	146740000	47205	154	44424	285157;285158;285159;285160;285161;285162;285163;285164;285165;285166;285167;285168;285169;285170;285171;285172;285173	382486;382487;382488;382489;382490;382491;382492;382493;382494;382495;382496;382497;382498;382499;382500;382501;382502;382503;382504;382505;382506;382507;382508;382509;382510;382511;382512;382513;382514	382492			29	
SPISVAAAAIYMASQASAEK	1	Unmodified	1964.9877	0.98772734	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.93	101.82	3	2.3949E-43	91012	160511_QHF_FH_JSI11i_3	159.26	134.46			0.99427	0.91331	17.249	3	0	Median	1.4816	1.1872	NaN	1	0	Median	0.75991	0.85757	NaN	1	0	Median	0.99427	0.91331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	306180000	166980000	139210000	48304000	20850000	27454000	107260000	58348000	48912000	150620000	87779000	62839000	0	0	0	47206	2148	44425	285174;285175;285176	382515;382516;382517;382518;382519;382520	382515			6	
SPISVPGGSALISNLGK	1	Unmodified	1595.8883	0.88827129	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.795	6	7	6							2	4	6	7	81.268	80.764	2;3	2.2895E-06	70050	160511_QHF_FH_JSI12i_3	117.07	62.464			0.9431	0.93721	13.158	19	4	Median	1.3035	1.123	25.572	2	1	Median	0.76577	0.89678	4.4086	4	1	Median	1.0723	1.06	13.341	6	0	Median	0.93985	1.0138	10.922	7	2	Median	684140000	336980000	347160000	65890000	25138000	40752000	78579000	41304000	37275000	296250000	153390000	142860000	243430000	117150000	126270000	47207	1743	44426	285177;285178;285179;285180;285181;285182;285183;285184;285185;285186;285187;285188;285189;285190;285191;285192;285193;285194;285195	382521;382522;382523;382524;382525;382526;382527;382528;382529;382530;382531;382532;382533;382534;382535;382536;382537;382538;382539	382538			19	
SPITGNDLSPPVSFNLMFK	1	Unmodified	2063.0398	0.03976291	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	101.35	101.24	2	4.0257E-67	87062	160511_QHF_FH_JSI12i_2	230.36	199.87			0.9105	0.92568	51.938	4	0	Median	1.3193	1.1108	NaN	1	0	Median	0.31752	0.39158	NaN	1	0	Median	1.2117	1.2368	NaN	1	0	Median	0.68416	0.77138	NaN	1	0	Median	427910000	233980000	193930000	93162000	42322000	50840000	81950000	62252000	19698000	139430000	61047000	78378000	113370000	68356000	45012000	47208	1519	44427	285196;285197;285198;285199	382540;382541	382540			2	
SPIYSHFSETVSGLPVIR	0	Unmodified	1988.0367	0.036726442	3899	Q92887	ABCC2	Canalicular multispecific organic anion transporter 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		79.502	78.827	3	0.001091	66099	160511_QHF_FH_JSI10i_3	40.844	30.787			0.76048	0.78926	1.0462	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67008	0.78344	NaN	1	0	Median	0.86307	0.79512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38794000	23451000	15342000	0	0	0	18332000	10030000	8301800	20462000	13421000	7040500	0	0	0	47209	3899	44428	285200;285201	382542;382543	382543			2	
SPLAGDFITMQCR	0	Unmodified	1494.6959	0.69591919	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	66.542	65.663	2	0.0004377	56405	160511_QHF_FH_JSI12i_2	70.488	63.885			1.0589	1.183	33.633	4	3	Median	NaN	NaN	NaN	0	0	Median	0.7757	0.94625	27.701	2	2	Median	1.1845	1.216	NaN	1	1	Median	1.5731	1.7697	NaN	1	0	Median	227460000	106290000	121170000	0	0	0	80983000	43919000	37064000	97084000	44148000	52936000	49390000	18224000	31166000	47210	758	44429	285202;285203;285204;285205	382544;382545;382546;382547	382544			4	
SPLAMSHASGVK	1	Unmodified	1183.6019	0.60194245	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	18.178	18.204	2;3	0.0014913	14718	160511_QHF_FH_JSI12i_3	64.439	43.568			1.1364	1.1688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1364	1.1688	NaN	1	0	Median	65114000	39533000	25581000	0	0	0	0	0	0	0	0	0	65114000	39533000	25581000	47211	2784	44430	285206;285207	382548;382549	382549			2	
SPLAQMEEERR	0	Unmodified	1344.6456	0.64559818	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	23.553	22.989	3	0.016717	18863	160511_QHF_FH_JSI11i_2	31.843	20.63			0.88262	0.97099	23.511	4	0	Median	0.77234	0.66456	NaN	1	0	Median	0.9036	1.0848	NaN	1	0	Median	1.0843	1.0944	NaN	1	0	Median	0.86213	0.86909	NaN	1	0	Median	414020000	217840000	196180000	107910000	54246000	53661000	154830000	85345000	69480000	109380000	57207000	52168000	41913000	21038000	20876000	47212	2725	44431	285208;285209;285210;285211	382550;382551;382552	382550			3	
SPLCEYMINFIHK	1	Unmodified	1650.7898	0.78981957	2684	Q15561	TEAD4	Transcriptional enhancer factor TEF-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.621	85.469	3	0.00031598	74214	160511_QHF_FH_JSI12i_3	62.924	55.199			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47213	2684	44432	285212	382553	382553			1	
SPLCTFYFSNMLGFYPSITHR	0	Unmodified	2537.1872	0.1871722	798	P03915	MT-ND5	NADH-ubiquinone oxidoreductase chain 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.382	86.008	3	4.2369E-37	50447	160513_QHF_FH_JSI10Kac_6	161.8	151.12			0.99279	1.0323	17.559	4	0	Median	0.96789	0.84262	NaN	1	0	Median	0.93589	1.1075	NaN	1	0	Median	1.0183	0.96215	NaN	1	0	Median	1.2124	1.2652	NaN	1	0	Median	649850000	321880000	327970000	82809000	46234000	36575000	221840000	104340000	117500000	222420000	113860000	108570000	122770000	57455000	65319000	47214	798	44433	285213;285214;285215;285216	382554;382555;382556	382556			3	
SPLFGQYFVLENPGTIK	1	Unmodified	1908.9986	0.99855002	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		100.37	100.33	2	4.9316E-17	89297	160511_QHF_FH_JSI11i_3	127.76	105.56			0.99737	0.91091	15.154	2	2	Median	1.1581	1.0139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85896	0.81835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37604000	20099000	17504000	18561000	7775900	10785000	0	0	0	19042000	12323000	6719100	0	0	0	47215	2985	44434	285217;285218;285219	382557;382558;382559	382558			3	
SPLFQFAEISSSTSHSDASTK	1	Unmodified	2226.0441	0.044056244	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2	1	1	1	1	73.589	67.578	3	4.8895E-13	35153	160513_QHF_FH_JSI12Kac_6	106.23	97.437			0.93518	0.87788	21.562	3	0	Median	0.84916	0.7122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93518	0.87788	NaN	1	0	Median	1.0168	1.0961	NaN	1	0	Median	87543000	48094000	39449000	16834000	8805500	8028400	0	0	0	45672000	27487000	18185000	25037000	11801000	13236000	47216	3816	44435	285220;285221;285222;285223	382560;382561;382562	382562			3	
SPLFVGK	1	Unmodified	746.43268	0.4326755	61	CON__P34955			yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		32.06	31.588	2	0.045437	27949	160511_QHF_FH_JSI10i_2	44.692	23.145		+	0.87085	0.93134	40.318	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0168	1.2386	NaN	1	0	Median	0.74588	0.70032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130170000	67686000	62480000	0	0	0	84436000	41290000	43146000	45730000	26396000	19334000	0	0	0	47217	61	44436	285224;285225	382563;382564	382564			2	
SPLGEVAIR	0	Unmodified	940.53418	0.53418046	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		41.868	41.041	2	0.0049801	35112	160511_QHF_FH_JSI11i_2	65.246	26.284			0.34512	0.35928	48.623	3	3	Median	0.19914	0.16859	NaN	1	1	Median	0.34512	0.41774	NaN	1	1	Median	0.34769	0.35928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1370300000	1102700000	267580000	530230000	435890000	94339000	240810000	188800000	52006000	599230000	477990000	121240000	0	0	0	47218	479	44437	285226;285227;285228	382565;382566;382567	382566			3	
SPLHIKDDVLPK	2	Acetyl (K)	1402.782	0.78201531	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		68.862	57.999	3	0.023082	31219	160513_QHF_FH_JSI11Kac_5	43.382	30.505			0.32613	0.31046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32613	0.31046	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1529200	1312400	216830	0	0	0	0	0	0	1529200	1312400	216830	0	0	0	47219	2977	44438	285229	382568	382568	2731		1	
SPLHLVQMPPVIVETAR	0	Unmodified	1886.0448	0.044788708	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	82.624	82.094	3	4.2688E-05	73061	160511_QHF_FH_JSI11i_3	72.819	63.031			0.80858	0.7923	64.095	4	0	Median	NaN	NaN	NaN	0	0	Median	0.59333	0.70882	110.04	2	0	Median	0.88675	0.84767	NaN	1	0	Median	0.7373	0.74054	NaN	1	0	Median	159970000	91734000	68235000	0	0	0	55594000	39523000	16071000	42072000	19657000	22416000	62302000	32554000	29748000	47220	4422	44439	285230;285231;285232;285233	382569;382570;382571;382572;382573;382574	382569			6	
SPLIESTANMDNNQSQK	1	Unmodified	1875.8633	0.86325511	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.274	35.851	2	2.3129E-32	32047	160511_QHF_FH_JSI10i_1	146.5	124.3			0.29973	0.2932	24.24	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37513	0.34802	NaN	1	1	Median	0.23949	0.24702	NaN	1	1	Median	140950000	110670000	30286000	0	0	0	0	0	0	68545000	50283000	18261000	72409000	60384000	12025000	47221	227	44440	285234;285235;285236	382575;382576;382577	382577			3	
SPLIIFSDCDMNNAVK	1	Unmodified	1822.8594	0.8593557	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	81.899	81.334	2;3	3.113E-07	71481	160511_QHF_FH_JSI11i_2	130.01	115.13			1.1555	1.2057	27.407	4	3	Median	NaN	NaN	NaN	0	0	Median	0.81516	0.92192	NaN	1	1	Median	1.2649	1.2396	33.068	2	2	Median	1.3722	1.4816	NaN	1	0	Median	125500000	58382000	67123000	0	0	0	30024000	15678000	14346000	70827000	30613000	40215000	24654000	12092000	12562000	47222	1645	44441	285237;285238;285239;285240	382578;382579;382580;382581;382582;382583	382583			6	
SPLLAGGSPPQPVVPAHK	1	Unmodified	1750.973	0.97300397	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	51.866	51.176	3	2.2084E-05	43775	160511_QHF_FH_JSI12i_3	77.051	72.809			1.008	1.0771	10.447	6	0	Median	1.2645	1.0855	NaN	1	0	Median	0.90395	1.0957	NaN	1	0	Median	1.008	0.99383	10.282	2	0	Median	1.0408	1.0908	18.007	2	0	Median	1059800000	504710000	555100000	109400000	44834000	64564000	141800000	75392000	66404000	369100000	185690000	183410000	439520000	198800000	240730000	47223	3658	44442	285241;285242;285243;285244;285245;285246	382584;382585;382586;382587;382588;382589;382590;382591;382592;382593;382594;382595	382595			12	
SPLLAGGSPPQPVVPAHKDK	2	Acetyl (K)	2036.1055	0.10547471	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		65.201	54.399	3	0.0080949	29491	160513_QHF_FH_JSI11Kac_5	42.711	38.677			0.58384	0.62399	60.874	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80156	0.95965	NaN	1	0	Median	0.42526	0.40573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9301700	6382300	2919500	0	0	0	2495200	1423900	1071300	6806500	4958400	1848100	0	0	0	47224	3658	44443	285247;285248	382596;382597	382597	2910		2	
SPLLPAVLEGLAK	1	Unmodified	1306.786	0.78603805	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.74	100.74	2	0.012497	89757	160511_QHF_FH_JSI11i_3	45.915	44.071			1.1189	1.06	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1189	1.06	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65384000	28682000	36702000	0	0	0	0	0	0	65384000	28682000	36702000	0	0	0	47225	3748	44444	285249	382598	382598			1	
SPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR	0	Unmodified	3624.8684	0.86841083	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				106.42	97.182	3	1.6354E-30	56095	160513_QHF_FH_JSI9Kac_6	153.25	138.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3570000	0	3570000	3570000	0	3570000	0	0	0	0	0	0	0	0	0	47226	3343	44445	285250	382599	382599			1	
SPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR	0	Oxidation (M)	3640.8633	0.86332545	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			105.92	100.2	4	8.0954E-12	59408	160513_QHF_FH_JSI10Kac_6	100.23	89.351			0.84715	1.0122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84715	1.0122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74080000	49276000	24804000	0	0	0	74080000	49276000	24804000	0	0	0	0	0	0	47227	3343	44445	285251	382600	382600		2253	1	
SPLLQLPHIEEDNLR	0	Unmodified	1772.9421	0.94209778	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	77.089	76.487	3	1.1936E-07	66369	160511_QHF_FH_JSI12i_3	116.35	105.49			1.0098	0.94657	13.547	6	1	Median	1.0802	0.90769	NaN	1	1	Median	0.76976	0.95242	NaN	1	0	Median	1.1002	1.047	18.534	2	0	Median	0.99834	1.0703	18.252	2	0	Median	685490000	332950000	352550000	73048000	35133000	37915000	87089000	50806000	36283000	306040000	141240000	164800000	219320000	105770000	113550000	47228	5285	44446	285252;285253;285254;285255;285256;285257	382601;382602;382603;382604;382605;382606;382607;382608;382609;382610	382609			10	
SPLMSEFQSQISSNPELAAIFESIQK	1	Unmodified	2880.4215	0.42152505	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	1	2	1	102.47	102.43	3	1.888E-32	91601	160511_QHF_FH_JSI11i_3	154.14	148.85			0.96466	0.96214	10.011	5	1	Median	1.1268	0.96214	NaN	1	0	Median	0.91866	1.1222	NaN	1	0	Median	1.0127	1.0019	15.018	2	1	Median	0.96466	0.9477	NaN	1	0	Median	879640000	436640000	443000000	151110000	63480000	87626000	192270000	93034000	99232000	409320000	227790000	181530000	126940000	52333000	74609000	47229	3343	44447	285258;285259;285260;285261;285262	382611;382612;382613;382614;382615;382616	382611			6	
SPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGK	1	Unmodified	4303.0435	0.043474664	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			99.371	92.792	3;4;5	0	54946	160513_QHF_FH_JSI10Kac_6	415.4	402.72			0.79537	0.94603	19.144	4	0	Median	1.1853	1.0153	NaN	1	0	Median	0.79833	0.94432	20.407	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2658000000	1439700000	1218400000	600270000	255420000	344850000	2057700000	1184200000	873500000	0	0	0	0	0	0	47230	380	44448	285263;285264;285265;285266	382617;382618;382619;382620;382621;382622	382621			6	
SPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGK	1	Oxidation (M)	4319.0384	0.038389286	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	1	0		By MS/MS			16	0									2		2			98.37	92.649	4	3.3086E-10	54123	160513_QHF_FH_JSI10Kac_6	78.974	72.373			1.2892	1.4964	79.242	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2892	1.4964	79.242	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298240000	129780000	168460000	0	0	0	298240000	129780000	168460000	0	0	0	0	0	0	47231	380	44448	285267;285268	382623;382624	382624		150;151	2	
SPLPIVR	0	Unmodified	780.48577	0.48577371	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	37.834	37.258	2	0.033612	32615	160511_QHF_FH_JSI11i_3	50.539	36.553			0.99083	1.054	11.753	8	0	Median	1.2454	1.0493	NaN	1	0	Median	0.89972	1.0874	3.7841	2	0	Median	1.03	0.99993	7.0098	3	0	Median	1.1383	1.2107	22.058	2	0	Median	556710000	270040000	286670000	72546000	30220000	42326000	116800000	59196000	57602000	183540000	89314000	94223000	183830000	91310000	92516000	47232	2605	44449	285269;285270;285271;285272;285273;285274;285275;285276	382625;382626;382627	382625			3	
SPLPLTLQHLVAFWEDISLATIK	1	Unmodified	2591.4363	0.4363109	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.8	96.079	3	4.3157E-12	56757	160513_QHF_FH_JSI10Kac_6	102.27	89.078			1.0864	1.257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0864	1.257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55751000	32565000	23186000	0	0	0	55751000	32565000	23186000	0	0	0	0	0	0	47233	545	44450	285277	382628	382628			1	
SPLPSYPGANPQPAFGAAEGQPPGAAK	1	Unmodified	2576.266	0.26595111	35;4105	A8CG34;A6NF01;Q96HA1	POM121C;POM121B;POM121	Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	67.02	66.564	3	2.615E-05	60718	160511_QHF_FH_JSI12i_1	44.596	37.564			1.0916	1.2675	7.8041	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0916	1.2773	NaN	1	1	Median	1.1485	1.1113	NaN	1	1	Median	1.0657	1.1207	NaN	1	0	Median	127780000	47966000	79812000	0	0	0	51947000	18029000	33918000	45936000	17800000	28136000	29895000	12136000	17759000	47234	35;4105	44451	285278;285279;285280	382629;382630;382631;382632;382633	382631			5	
SPLQSVVVR	0	Unmodified	983.57638	0.57637963	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	2	1	46.523	36.266	2	0.059591	20382	160513_QHF_FH_JSI11Kac_5	35.152	19.892			0.93879	1.028	12.799	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83105	0.96786	15.824	2	0	Median	0.96943	0.95692	10.14	2	0	Median	1.0354	1.1683	NaN	1	0	Median	24606000	13031000	11575000	0	0	0	5430100	2810100	2620000	14501000	7812800	6688100	4675200	2407900	2267300	47235	5542	44452	285281;285282;285283;285284;285285	382634	382634			1	
SPLSAAR	0	Acetyl (Protein N-term)	742.39735	0.39735263	3544	Q8N5I4	DHRSX	Dehydrogenase/reductase SDR family member on chromosome X	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		5.2363	5.0642	2	0.0077841	3005	160511_QHF_FH_JSI10i_1	56.026	25.357			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47236	3544	44453	285286;285287	382635;382636	382636			2	
SPLSSPQQTQLLGELEK	1	Unmodified	1853.9735	0.97345748	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	73.905	73.404	2	8.0451E-05	66429	160511_QHF_FH_JSI10i_1	100.55	85.18			1.314	1.2858	17.7	4	1	Median	1.4732	1.2054	NaN	1	0	Median	1.2059	1.3716	NaN	1	0	Median	1.0408	1.014	NaN	1	1	Median	1.4318	1.5301	NaN	1	0	Median	78045000	37176000	40869000	16998000	7601700	9396100	24250000	11497000	12753000	14195000	6517900	7677400	22602000	11560000	11042000	47237	5384	44454	285288;285289;285290;285291;285292	382637;382638;382639;382640;382641;382642;382643	382641			7	
SPLSWIEEK	1	Unmodified	1087.555	0.55497548	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	1	2	2	66.548	65.848	2	0.0040742	58506	160511_QHF_FH_JSI10i_2	57.55	41.668			1.0828	1.1747	67.955	7	1	Median	0.61757	0.51998	129.29	2	0	Median	1.0828	1.3077	NaN	1	0	Median	1.0609	1.0282	18.834	2	0	Median	1.1733	1.2361	29.984	2	1	Median	578490000	289160000	289330000	166340000	92997000	73345000	120370000	57660000	62715000	203240000	99944000	103300000	88536000	38562000	49975000	47238	1791	44455	285293;285294;285295;285296;285297;285298;285299	382644;382645;382646;382647;382648;382649	382648			6	
SPLTQEQLIPNLAMK	1	Unmodified	1681.9073	0.90729217	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	8	7								4	4	3	4	82.546	81.931	2;3	3.2181E-65	74714	160511_QHF_FH_JSI11i_1	226.73	196.97			0.9628	0.95655	10.57	15	1	Median	1.181	1.0191	12.55	4	1	Median	0.85772	1.0045	11.873	4	0	Linear	0.9866	0.93115	6.0024	3	0	Plateau	0.96315	1.0137	6.4066	4	0	Median	798860000	407070000	391790000	181240000	97280000	83959000	234260000	128450000	105800000	194410000	88068000	106340000	188950000	93264000	95688000	47239	5434	44456	285300;285301;285302;285303;285304;285305;285306;285307;285308;285309;285310;285311;285312;285313;285314	382650;382651;382652;382653;382654;382655;382656;382657;382658;382659;382660;382661;382662;382663;382664;382665;382666;382667;382668	382653			17	
SPLVAAMQHFLPVLK	1	Unmodified	1649.9327	0.93271906	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	3	3	3	4	97.516	93.912	2;3	2.6141E-55	83853	160511_QHF_FH_JSI10i_3	188.06	163.21			0.98873	0.9615	21.69	12	0	Median	1.1222	0.90489	35.236	3	0	Median	0.91322	1.0355	12.415	2	0	Median	1.0523	0.99958	11.353	3	0	Median	0.86863	0.88003	21.202	4	0	Median	17813000000	9628100000	8184800000	2982100000	1464500000	1517600000	4390300000	2665900000	1724400000	4030900000	1886000000	2144900000	6409600000	3611700000	2797800000	47240	686	44457	285315;285316;285317;285318;285319;285320;285321;285322;285323;285324;285325;285326;285327	382669;382670;382671;382672;382673;382674;382675;382676;382677;382678;382679;382680;382681;382682;382683;382684;382685;382686;382687;382688;382689	382674			21	
SPLVAAMQHFLPVLK	1	Oxidation (M)	1665.9276	0.92763369	686	O95373	IPO7	Importin-7	yes	yes	0	0	1	0	By MS/MS	By matching	By matching		3	0			3							1	1	1		77.826	76.902	3	0.000439	63253	160511_QHF_FH_JSI9i_3	59.248	45.531			0.75679	0.97385	19.87	3	0	Plateau	1.1864	0.97385	NaN	1	0	Median	0.87845	1.0192	NaN	1	0	Median	0.75679	0.70779	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130610000	61631000	68983000	42581000	18846000	23735000	42745000	22544000	20201000	45287000	20241000	25046000	0	0	0	47241	686	44457	285328;285329;285330	382690;382691	382690		241	2	
SPLVMDVLNIQGVQR	0	Unmodified	1667.9029	0.9028755	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		11								2	3	3	3	91.638	91.1	2;3	9.6357E-08	80094	160511_QHF_FH_JSI11i_2	121.02	105.45			1.2252	1.2841	25.773	10	9	Median	2.1133	1.8564	2.0598	2	2	Median	0.87964	1.0851	32.536	3	2	Median	1.3093	1.2894	23.331	2	2	Median	1.0883	1.1607	16.678	3	3	Median	365600000	159760000	205840000	81305000	30336000	50969000	121080000	55260000	65823000	79057000	33241000	45817000	84157000	40925000	43232000	47242	2517	44458	285331;285332;285333;285334;285335;285336;285337;285338;285339;285340;285341	382692;382693;382694;382695;382696;382697;382698;382699;382700;382701;382702	382699			11	
SPMVEQAVQTGSADNLNAK	1	Unmodified	1958.9368	0.9367544	4508	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.624	46.966	2	1.045E-10	42642	160511_QHF_FH_JSI12i_1	131.53	106.68			0.81866	0.82224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81866	0.82224	NaN	1	1	Median	17304000	3817600	13486000	0	0	0	0	0	0	0	0	0	17304000	3817600	13486000	47243	4508	44459	285342	382703;382704	382703			2	
SPMVSFGAVGFDPHPPMR	0	Unmodified	1927.9073	0.90730895	2220	Q04726	TLE3	Transducin-like enhancer protein 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.461	77.067	3	0.00010349	63399	160511_QHF_FH_JSI9i_3	59.434	55.082			1.8707	1.5599	NaN	1	0	Median	1.8707	1.5599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13555000	4492800	9062000	13555000	4492800	9062000	0	0	0	0	0	0	0	0	0	47244	2220	44460	285343	382705	382705			1	
SPNCQGLMHLQGK	1	Unmodified	1468.6915	0.69150251	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			31.042	30.103	3	0.048883	26364	160511_QHF_FH_JSI10i_2	27.005	14.84			0.36631	0.44918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36631	0.44918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24976000	18097000	6878600	0	0	0	24976000	18097000	6878600	0	0	0	0	0	0	47245	3159	44461	285344	382706	382706			1	
SPNELVDDLFK	1	Unmodified	1275.6347	0.63468237	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.986	83.523	2	0.029967	75956	160511_QHF_FH_JSI12i_1	39.848	31.155			0.86828	1.0307	5.3532	4	0	Linear	1.209	1.0301	NaN	1	0	Median	0.91235	1.0867	NaN	1	0	Median	0.97329	0.95426	NaN	1	0	Median	0.99835	1.0312	NaN	1	0	Median	191010000	97768000	93241000	28645000	11791000	16854000	75738000	42775000	32963000	45185000	21624000	23561000	41442000	21578000	19863000	47246	5453	44462	285345;285346;285347;285348	382707;382708;382709	382708			3	
SPNGTIR	0	Unmodified	743.3926	0.3926016	576;1635	O75874;P48735	IDH1;IDH2	Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	5.4559	5.0608	2	0.059192	3114	160511_QHF_FH_JSI10i_2	41.122	0			0.87976	0.91458	1.1084	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71953	0.89622	NaN	1	0	Median	0.87976	0.91458	NaN	1	0	Median	0.81735	0.91239	NaN	1	0	Median	1580000000	850240000	729760000	0	0	0	391040000	226720000	164330000	766450000	386670000	379780000	422510000	236850000	185660000	47247	576;1635	44463	285349;285350;285351	382710	382710			1	
SPNLDLVETEIK	1	Unmodified	1356.7137	0.71366097	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	67.588	66.911	2	0.00012481	59449	160511_QHF_FH_JSI9i_1	85.288	63.296			0.79551	0.83956	6.0716	3	1	Plateau	0.94945	0.77315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78628	0.75978	NaN	1	1	Median	0.79551	0.8505	NaN	1	0	Median	252680000	132700000	119970000	68087000	33548000	34539000	0	0	0	78028000	43671000	34356000	106560000	55485000	51079000	47248	4678	44464	285352;285353;285354	382711;382712;382713;382714	382714			4	
SPNLWLK	1	Unmodified	856.48069	0.48068833	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	48.072	47.356	2	0.049359	40526	160511_QHF_FH_JSI12i_2	43	26.073			0.92626	1.0448	10.311	7	0	Median	1.2208	1.0362	NaN	1	0	Median	0.87245	1.055	1.3749	2	0	Median	0.91199	0.91943	12.239	2	0	Median	1.0438	1.1232	8.1369	2	0	Median	1767400000	884370000	883000000	245230000	111980000	133250000	401810000	221080000	180730000	455670000	244370000	211310000	664660000	306950000	357710000	47249	2094	44465	285355;285356;285357;285358;285359;285360;285361	382715;382716;382717;382718	382715			4	
SPNTEEIFNMLTK	1	Unmodified	1522.7337	0.73374448	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	89.254	88.648	2	0.008122	78730	160511_QHF_FH_JSI10i_2	59.198	50.24			1.0721	1.1565	7.7286	3	3	Median	1.2581	1.1122	NaN	1	1	Median	1.0395	1.291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0721	1.1565	NaN	1	1	Median	88678000	46573000	42105000	32895000	17460000	15435000	24245000	14429000	9817000	0	0	0	31537000	14684000	16853000	47250	3212	44466	285362;285363;285364	382719;382720;382721	382721			3	
SPPAEVLVNIIAVLNNLVVASPIAAR	0	Unmodified	2639.5374	0.53742193	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	105.56	97.426	3	7.7396E-23	52798	160513_QHF_FH_JSI12Kac_6	125.82	112.63			0.833	1.0049	20.791	3	0	Plateau	1.7062	1.4685	NaN	1	0	Median	0.833	1.0049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96294	1.0481	NaN	1	0	Median	385900000	205730000	180180000	39103000	15953000	23150000	286720000	158470000	128250000	0	0	0	60080000	31306000	28774000	47251	5608	44467	285365;285366;285367	382722;382723	382722			2	
SPPASSAASADQHSQSGSSSDNTER	0	Unmodified	2460.0385	0.038529949	3458	Q8IY57	YAF2	YY1-associated factor 2	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	8.9336	8.4905	3	3.9999E-11	6342	160511_QHF_FH_JSI10i_1	88.571	85.284			1.0705	1.0193	5.8033	3	0	Median	1.1968	0.9832	NaN	1	0	Median	0.85586	1.0193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0705	1.1014	NaN	1	0	Median	195390000	104240000	91148000	71837000	40326000	31511000	75830000	39021000	36809000	0	0	0	47720000	24892000	22828000	47252	3458	44468	285368;285369;285370	382724;382725	382725			2	
SPPFFENLTLDLQPPK	1	Unmodified	1841.9564	0.95635086	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	101.36	101.24	3	6.6549E-06	87097	160511_QHF_FH_JSI12i_2	103.39	85.47			0.74677	0.87843	21.615	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6764	0.8178	NaN	1	0	Median	1.269	1.2593	NaN	1	0	Median	0.94433	1.0353	NaN	1	0	Median	182420000	78708000	103720000	0	0	0	65271000	26192000	39079000	54253000	27689000	26564000	62901000	24827000	38074000	47253	1194	44469	285371;285372;285373	382726	382726			1	
SPPGQVTEAVK	1	Unmodified	1111.5873	0.58733824	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	22.699	22.165	2	0.011523	19572	160511_QHF_FH_JSI12i_1	46.001	27.219			1.2051	1.2943	20.096	4	0	Median	1.7945	1.479	NaN	1	0	Median	1.1223	1.3291	NaN	1	0	Median	1.294	1.2605	NaN	1	0	Median	0.87052	0.92602	NaN	1	0	Median	2983300000	1164500000	1818700000	769480000	262710000	506770000	559990000	166390000	393590000	740020000	273900000	466120000	913760000	461510000	452250000	47254	1067	44470	285374;285375;285376;285377;285378	382727;382728;382729;382730;382731;382732	382729			6	
SPPHLIK	1	Unmodified	790.47012	0.47012364	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	no	no	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	15.48	15.164	2	0.053397	11734	160511_QHF_FH_JSI12i_3	42.229	26.075			0.97304	0.94602	20.597	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.58135	0.67294	NaN	1	0	Median	1.0695	1.0078	NaN	1	0	Median	0.87841	0.88345	NaN	1	0	Median	192040000	97968000	94067000	0	0	0	33282000	20607000	12674000	79815000	35649000	44165000	78939000	41711000	37228000	47255	2294	44471	285379;285380;285381	382733	382733			1	
SPPILPPHLLQVILNK	1	Unmodified	1778.0818	0.081826142	368	O43741	PRKAB2	5'-AMP-activated protein kinase subunit beta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			101.48	101.32	3	1.7992E-12	83950	160511_QHF_FH_JSI10i_3	114.64	104.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47256	368	44472	285382;285383	382734;382735	382734			2	
SPPLHEHPLYK	1	Unmodified	1316.6877	0.68772099	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	19.175	19.188	3	0.00017121	15406	160511_QHF_FH_JSI12i_3	58.674	47.461			0.74121	0.73387	50.429	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54344	0.51375	NaN	1	0	Median	1.011	1.0483	NaN	1	0	Median	180030000	89060000	90973000	0	0	0	0	0	0	65550000	41886000	23664000	114480000	47174000	67308000	47257	4558	44473	285384;285385	382736;382737;382738	382738			3	
SPPNVQFTFQQPK	1	Unmodified	1516.7674	0.76742787	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.463	59.07	2	0.014539	53343	160511_QHF_FH_JSI10i_1	53.013	34.056			0.54089	0.64218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54089	0.64218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55471000	33463000	22009000	0	0	0	55471000	33463000	22009000	0	0	0	0	0	0	47258	236	44474	285386	382739	382739			1	
SPPPELTDTATSTK	1	Unmodified	1443.7093	0.70930387	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	32.673	31.752	2	0.013351	28565	160511_QHF_FH_JSI12i_1	39.148	13.105			0.63221	0.56724	89.994	2	1	Median	0.37665	0.30019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0612	1.0718	NaN	1	0	Median	50155000	32774000	17381000	25420000	20685000	4735800	0	0	0	0	0	0	24735000	12090000	12645000	47259	1576	44475	285387;285388	382740;382741	382740			2	
SPPPGMGLNQNR	0	Unmodified	1266.6139	0.61390412	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			2	3	2	1	27.5	25.673	2	3.8028E-05	22084	160511_QHF_FH_JSI9i_2	103.74	94.525			1.0294	1.0089	14.583	8	3	Median	1.2721	1.0897	3.1853	2	0	Median	0.81348	0.94778	5.5446	3	2	Plateau	1.243	1.2435	8.7068	2	0	Median	0.91287	0.95541	NaN	1	1	Median	686700000	339700000	347010000	181070000	73807000	107270000	247120000	149000000	98120000	137700000	58671000	79026000	120820000	58222000	62594000	47260	1222	44476	285389;285390;285391;285392;285393;285394;285395;285396	382742;382743;382744;382745;382746;382747;382748;382749;382750;382751;382752	382746			11	
SPPREGSQGELTPANSQSR	0	Unmodified	1996.9562	0.95624429	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.91		2	2					2		2	2	1	1	18.274	14.591	3	7.2825E-06	12219	160511_QHF_FH_JSI10i_3	87.16	74.959			1.1841	1.158	8.5877	6	0	Median	1.4345	1.1871	9.1499	2	0	Median	0.88958	1.0594	8.5534	2	0	Median	1.2564	1.2294	NaN	1	0	Median	1.116	1.1914	NaN	1	0	Median	231820000	107940000	123880000	108990000	42690000	66300000	116230000	62201000	54027000	4235400	1919900	2315500	2369100	1131200	1237900	47261	2349	44477	285397;285398;285399;285400;285401;285402	382753;382754;382755;382756;382757;382758;382759;382760	382753			8	
SPPSAGYLVMVSR	0	Unmodified	1362.6966	0.69657112	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	69.274	60.337	2	0.036908	33108	160513_QHF_FH_JSI10Kac_6	40.589	23.153			0.91501	0.89699	10.5	4	0	Median	0.98795	0.84622	NaN	1	0	Median	0.73023	0.86475	NaN	1	0	Median	1.1112	1.0677	NaN	1	0	Median	0.84745	0.93042	NaN	1	0	Median	220920000	123520000	97399000	24641000	13180000	11461000	136280000	81119000	55157000	46717000	22258000	24460000	13284000	6963400	6321100	47262	3146	44478	285403;285404;285405;285406	382761	382761			1	
SPPSLHLLEAFK	1	Unmodified	1337.7343	0.73433683	555	O75665	OFD1	Oral-facial-digital syndrome 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.675	73.882	3	0.00046728	63865	160511_QHF_FH_JSI12i_3	58.487	54.146			0.76679	0.8265	25.907	4	0	Median	1.2197	1.0425	NaN	1	0	Median	0.66668	0.76684	NaN	1	0	Median	0.60553	0.56748	NaN	1	0	Median	0.88192	0.89082	NaN	1	0	Median	67732000	32808000	34924000	9594800	4492500	5102300	12152000	6878500	5274000	16779000	8212100	8567000	29206000	13225000	15981000	47263	555	44479	285407;285408;285409;285410	382762;382763;382764;382765;382766;382767;382768	382767			7	
SPPSTGSTYGSSQK	1	Unmodified	1382.6314	0.6313879	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	11.177	10.714	2	0.0019838	8156	160511_QHF_FH_JSI9i_1	58.676	38.89			0.73215	0.8141	13.738	4	3	Median	1.1081	0.90002	NaN	1	0	Median	0.66709	0.79512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71587	0.73735	17.339	2	2	Median	256150000	146700000	109450000	68338000	42009000	26328000	76864000	43550000	33314000	0	0	0	110950000	61136000	49811000	47264	5542	44480	285411;285412;285413;285414;285415	382769;382770;382771;382772;382773	382773			5	
SPPSYSVLYPSSDPK	1	Unmodified	1622.7828	0.78280317	3522	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	53.967	53.217	2	0.003018	47306	160511_QHF_FH_JSI9i_1	65.395	41.052			0.69599	0.60892	37.3	3	3	Plateau	0.69599	0.59173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79813	0.76766	NaN	1	1	Median	1.1755	1.2348	NaN	1	1	Median	94815000	52679000	42136000	29029000	19694000	9335100	0	0	0	35526000	16861000	18665000	30260000	16124000	14136000	47265	3522	44481	285416;285417;285418	382774;382775;382776	382776			3	
SPPTPTGLVHLVVVAAK	1	Unmodified	1684.9876	0.98759141	3471	Q8IYS2	KIAA2013	Uncharacterized protein KIAA2013	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		86.092	86.092	3	8.8725E-05	70739	160511_QHF_FH_JSI9i_3	70.529	50.69			0.95873	0.90113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95873	0.90113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46130000	22478000	23652000	0	0	0	0	0	0	46130000	22478000	23652000	0	0	0	47266	3471	44482	285419;285420;285421	382777;382778;382779	382779			3	
SPPYIFSPIPFLGHAIAFGK	1	Unmodified	2158.1615	0.16153303	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	2	1	1	98.82	93.842	3	7.6264E-33	49637	160513_QHF_FH_JSI11Kac_6	209.66	179.76			0.72172	0.86385	37.741	5	3	Median	1.1171	0.90827	NaN	1	0	Median	0.76437	0.90025	5.8364	2	1	Median	0.43811	0.41345	NaN	1	1	Median	0.48434	0.51375	NaN	1	1	Median	2241400000	1408000000	833390000	81670000	41670000	40000000	871570000	476130000	395440000	928920000	651210000	277710000	359250000	239010000	120240000	47267	2771	44483	285422;285423;285424;285425;285426	382780;382781;382782;382783;382784;382785;382786	382782			7	
SPPYTAFLGNLPYDVTEESIK	1	Unmodified	2340.1525	0.15254406	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								3	2	3	3	101.4	101.29	2;3	2.3152E-57	92007	160511_QHF_FH_JSI11i_1	266.28	231.53			0.99887	1.0346	17.997	11	3	Median	0.94991	0.79277	28.883	3	2	Plateau	0.84322	0.99201	5.947	2	1	Median	1.1094	1.0974	18.75	3	0	Plateau	1.1564	1.2312	17.911	3	0	Plateau	2809900000	1431300000	1378600000	350100000	168530000	181570000	904080000	464820000	439260000	748230000	375460000	372770000	807510000	422530000	384980000	47268	1237	44484	285427;285428;285429;285430;285431;285432;285433;285434;285435;285436;285437	382787;382788;382789;382790;382791;382792;382793;382794	382788			8	
SPQISMSDIDLNLK	1	Unmodified	1559.7865	0.78650834	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	79.351	78.905	2;3	1.5946E-14	71467	160511_QHF_FH_JSI10i_1	156	141.58			0.92585	0.89174	7.8553	5	1	Median	1.0052	0.82263	NaN	1	0	Median	0.7228	0.86268	NaN	1	0	Median	0.96516	0.94025	7.4913	2	1	Median	0.92585	0.96958	NaN	1	0	Median	731800000	370450000	361350000	91720000	47536000	44184000	221850000	120750000	101100000	220200000	105080000	115130000	198030000	97095000	100940000	47269	2286	44485	285438;285439;285440;285441;285442	382795;382796;382797;382798;382799;382800;382801;382802;382803	382801			9	
SPQNQYPAELMR	0	Unmodified	1432.6769	0.67689831	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	42.661	41.923	2	1.4469E-07	37625	160511_QHF_FH_JSI10i_1	135.16	124.13			1.0533	1.0812	13.53	8	2	Median	1.3265	1.1603	NaN	1	0	Median	0.79151	0.94701	8.9244	2	0	Median	0.95053	0.93941	8.6334	2	0	Median	1.1159	1.1776	4.6088	3	2	Median	1537300000	769780000	767500000	48707000	19706000	29001000	373050000	206450000	166600000	469880000	236630000	233250000	645650000	307000000	338650000	47270	1411	44486	285443;285444;285445;285446;285447;285448;285449;285450;285451	382804;382805;382806;382807;382808;382809;382810;382811;382812;382813;382814;382815;382816;382817	382811			14	
SPQPDPVDTPASTK	1	Unmodified	1438.694	0.69398816	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.11	23.563	2	0.00017348	20779	160511_QHF_FH_JSI12i_1	93.959	66.217			0.86983	1.5037	41.404	4	0	Linear	0.76069	0.65305	NaN	1	0	Median	0.65474	0.76199	NaN	1	0	Median	1.7706	1.6747	NaN	1	0	Median	0.99464	1.0124	NaN	1	0	Median	195590000	99380000	96206000	37335000	19516000	17820000	39836000	27046000	12790000	62827000	24570000	38257000	55588000	28248000	27339000	47271	1576	44487	285452;285453;285454;285455	382818;382819;382820;382821;382822;382823;382824	382820			7	
SPQPDPVGTPTIFKPQSK	2	Unmodified	1923.0102	0.010177341	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	52.235	52.117	3	0.00011942	46023	160511_QHF_FH_JSI11i_3	65.784	57.697			1.0621	1.0338	18.21	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2709	1.1759	NaN	1	0	Median	0.88762	0.90891	NaN	1	1	Median	247240000	128430000	118810000	0	0	0	0	0	0	135280000	67817000	67466000	111960000	60610000	51346000	47272	1576	44488	285456;285457;285458;285459	382825;382826;382827;382828;382829	382826			5	
SPQPQLLSNKEK	2	Acetyl (K)	1409.7514	0.75144346	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		47.583	38.258	2	0.016787	21334	160513_QHF_FH_JSI11Kac_3	50.284	23.769			0.83029	0.8651	20.983	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88557	1.0035	NaN	1	0	Median	0.77846	0.74581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5575800	2931900	2643800	0	0	0	2297200	1139100	1158100	3278500	1792800	1485700	0	0	0	47273	2610	44489	285460;285461	382830	382830	2577		1	
SPQSDPADTPTNTK	1	Unmodified	1457.6634	0.66341631	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	11.339	10.849	2	3.6345E-10	8709	160511_QHF_FH_JSI10i_1	111.79	63.97			0.75741	0.86119	39.638	5	3	Median	0.68074	0.56071	14.02	2	2	Median	0.74057	0.86119	NaN	1	1	Median	1.4079	1.3642	NaN	1	0	Median	1.0018	1.0447	NaN	1	0	Median	459870000	238820000	221050000	189530000	118590000	70938000	69337000	34287000	35050000	97524000	39167000	58357000	103480000	46775000	56701000	47274	1576	44490	285462;285463;285464;285465;285466;285467	382831;382832;382833;382834;382835;382836;382837	382835			7	
SPQTLAPVGEDAMK	1	Unmodified	1442.7075	0.70752973	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				45.275	44.054	2	0.0041025	39201	160511_QHF_FH_JSI9i_1	63.611	40.693			0.40439	0.33072	NaN	1	1	Median	0.40439	0.33072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35690000	23225000	12465000	35690000	23225000	12465000	0	0	0	0	0	0	0	0	0	47275	3888	44491	285468	382838	382838			1	
SPQTPELVEALAFR	0	Unmodified	1556.8199	0.81985738	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	87.33	86.678	2	0.00023572	76268	160511_QHF_FH_JSI11i_2	86.028	71.729			1.1177	1.1845	5.7628	4	0	Median	1.3812	1.2016	NaN	1	0	Median	0.90697	1.0746	NaN	1	0	Median	1.2247	1.2244	NaN	1	0	Median	1.02	1.1676	NaN	1	0	Median	209340000	96258000	113090000	45543000	20302000	25240000	50032000	24596000	25435000	66648000	27701000	38947000	47122000	23659000	23463000	47276	5147	44492	285469;285470;285471;285472;285473	382839;382840;382841;382842;382843;382844;382845	382844			7	
SPQVPAAQQMLNFPEK	1	Unmodified	1783.8927	0.89270474	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	71.368	70.736	2;3	0.00033009	64310	160511_QHF_FH_JSI11i_1	70.235	58.544			1.2268	1.2856	11.904	3	3	Plateau	1.2268	1.0523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3659	1.3349	NaN	1	1	Median	1.0942	1.174	NaN	1	1	Median	136260000	71592000	64668000	36982000	15781000	21201000	0	0	0	55367000	29725000	25642000	43910000	26085000	17824000	47277	3907	44493	285474;285475;285476;285477	382846;382847;382848;382849	382846			4	
SPQYCQVIHR	0	Unmodified	1286.619	0.6189895	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		23.507	22.648	3	2.0851E-05	18669	160511_QHF_FH_JSI10i_3	69.786	61.273			0.80318	0.92283	16.284	3	0	Plateau	1.3268	1.0933	NaN	1	0	Median	0.80318	0.92283	NaN	1	0	Median	0.85277	0.78947	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131870000	69120000	62750000	40547000	18452000	22094000	50205000	26293000	23912000	41119000	24375000	16744000	0	0	0	47278	2374	44494	285478;285479;285480	382850	382850			1	
SPREPGYK	1	Unmodified	932.47158	0.4715802	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				6.1872	5.6643	3	0.032183	3676	160511_QHF_FH_JSI9i_3	31.53	15.327			1.1678	0.94437	NaN	1	0	Median	1.1678	0.94437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	179550000	74742000	104810000	179550000	74742000	104810000	0	0	0	0	0	0	0	0	0	47279	5542	44495	285481	382851	382851			1	
SPRPTSAPAITQGQVAEGGVLDASAK	1	Unmodified	2507.298	0.29797952	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				53.828	52.245	3	2.1336E-11	42853	160511_QHF_FH_JSI9i_3	84.318	75.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47280	988	44496	285482	382852	382852			1	
SPSAQLMEQVAQLK	1	Unmodified	1528.7919	0.79192807	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	72.765	72.171	2	6.7061E-05	62463	160511_QHF_FH_JSI12i_3	116.24	96.108			0.79418	0.88053	42.981	5	2	Median	NaN	NaN	NaN	0	0	Median	0.95458	1.1863	NaN	1	0	Median	0.61178	0.58673	61.25	2	1	Median	0.77907	0.87643	0.66027	2	1	Median	279610000	171830000	107770000	0	0	0	40308000	19095000	21212000	132070000	82267000	49804000	107230000	70472000	36756000	47281	2516	44497	285483;285484;285485;285486;285487	382853;382854;382855	382855			3	
SPSDLLDASAVSATSR	0	Unmodified	1575.774	0.77402939	420	O60499	STX10	Syntaxin-10	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				58.573	57.436	2	0.0081163	51025	160511_QHF_FH_JSI9i_1	47.987	33.829			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47282	420	44498	285488	382856	382856			1	
SPSDPSHVSVPPPPLLLPAATTR	0	Unmodified	2335.2536	0.25359551	3632	Q8NDX5	PHC3	Polyhomeotic-like protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	81.375	80.857	3	0.0029519	71087	160511_QHF_FH_JSI9i_2	41.256	32.656			0.6842	0.6751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6842	0.6751	NaN	1	1	Median	12205000	7240400	4965100	0	0	0	0	0	0	0	0	0	12205000	7240400	4965100	47283	3632	44499	285489;285490	382857;382858	382858			2	
SPSDSSTASTPVAEQIER	0	Unmodified	1860.8701	0.87011462	2749	Q16643	DBN1	Drebrin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	36.274	35.851	2	5.7587E-07	32531	160511_QHF_FH_JSI12i_1	116.51	81.623			1.0053	1.021	10.404	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1394	1.099	NaN	1	1	Median	0.88699	0.94862	NaN	1	1	Median	73761000	33006000	40755000	0	0	0	0	0	0	33478000	16809000	16668000	40283000	16197000	24087000	47284	2749	44500	285491;285492;285493	382859;382860;382861	382860			3	
SPSEISVHVGIDDTSRNSPK	1	Unmodified	2124.0447	0.044724946	2218	Q04656	ATP7A	Copper-transporting ATPase 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	62.268	61.618	3	0.035438	56023	160511_QHF_FH_JSI12i_1	31.111	25.902			0.88987	0.90996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88987	0.90996	NaN	1	1	Median	65591000	36140000	29450000	0	0	0	0	0	0	0	0	0	65591000	36140000	29450000	47285	2218	44501	285494	382862	382862			1	
SPSELFAQHIVTIVHHVK	1	Unmodified	2041.1109	0.11089444	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			13						13	9	8	4	5	77.231	72.462	3;4;5	5.7944E-12	37062	160513_QHF_FH_JSI11Kac_6	123.36	113.96			1.0668	1.1101	33.763	26	6	Plateau	0.85444	0.70943	34.217	9	2	Median	0.83431	0.98363	26.395	8	3	Median	1.0856	1.0179	6.1553	4	1	Median	1.2417	1.3216	25.263	5	0	Median	3450300000	1737100000	1713200000	499990000	239770000	260220000	1924400000	1023400000	900920000	454210000	219190000	235020000	571740000	254750000	316990000	47286	5542	44502	285495;285496;285497;285498;285499;285500;285501;285502;285503;285504;285505;285506;285507;285508;285509;285510;285511;285512;285513;285514;285515;285516;285517;285518;285519;285520	382863;382864;382865;382866;382867;382868;382869;382870;382871;382872;382873;382874;382875;382876;382877;382878;382879;382880;382881;382882;382883;382884;382885;382886;382887;382888;382889;382890;382891;382892;382893;382894;382895;382896;382897;382898;382899;382900	382870			37	
SPSGPSGSLENGTK	1	Unmodified	1316.6208	0.62082322	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.972	14.518	2	0.0011175	11886	160511_QHF_FH_JSI11i_1	65.842	39.399			0.9708	1.079	37.64	4	1	Median	1.5984	1.3215	NaN	1	0	Median	0.82264	0.97764	NaN	1	1	Median	0.5812	0.56751	NaN	1	0	Median	1.1456	1.1908	NaN	1	0	Median	191980000	89424000	102550000	46182000	13993000	32189000	43375000	23047000	20328000	54115000	29674000	24442000	48304000	22710000	25594000	47287	2494	44503	285521;285522;285523;285524	382901;382902;382903;382904	382901			4	
SPSGSAFGSQENLR	0	Unmodified	1435.6692	0.66917039	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.67	0.471	1	2										2	1	28.158	27.534	2	0.03078	24410	160511_QHF_FH_JSI11i_1	40.496	9.9326			1.0947	1.0786	7.9615	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0567	1.0469	4.2155	2	0	Median	1.0947	1.1897	NaN	1	0	Median	61264000	28225000	33038000	0	0	0	0	0	0	45254000	20597000	24657000	16010000	7628500	8381100	47288	4181	44504	285525;285526;285527	382905	382905			1	
SPSIGFMNK	1	Unmodified	979.4797	0.47970205	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.977	41.866	2	0.0025484	36854	160511_QHF_FH_JSI11i_3	64.207	42.247			0.93115	0.90578	9.4651	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91526	0.84715	NaN	1	0	Median	0.94732	0.96848	NaN	1	0	Median	234490000	116150000	118340000	0	0	0	0	0	0	86534000	44714000	41820000	147960000	71439000	76517000	47289	1989	44505	285528;285529	382906;382907;382908	382906			3	
SPSKPLPEVTDEYK	2	Unmodified	1588.7985	0.79845323	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.06	0.725	4	8	5							3	3	5	6	37.483	36.863	2;3	3.9774E-05	32278	160511_QHF_FH_JSI11i_3	111.64	99.088			0.99518	1.013	12.123	16	2	Median	1.1407	0.96628	11.894	3	0	Plateau	0.83236	1.0209	8.6599	3	1	Median	0.8935	1.0051	10.599	5	0	Linear	0.92498	0.95569	15.587	5	1	Median	2599200000	1262600000	1336600000	353500000	140370000	213130000	495610000	260920000	234690000	844870000	417690000	427180000	905250000	443610000	461650000	47290	840	44506	285530;285531;285532;285533;285534;285535;285536;285537;285538;285539;285540;285541;285542;285543;285544;285545;285546	382909;382910;382911;382912;382913;382914;382915;382916;382917;382918;382919;382920;382921;382922;382923;382924;382925;382926;382927;382928;382929;382930;382931;382932;382933;382934;382935;382936	382912			28	
SPSLDVTVPEAELNLETPEISVGGK	1	Unmodified	2580.317	0.31704321	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	99.883	99.79	2;3	4.0829E-09	90539	160511_QHF_FH_JSI12i_1	75.184	60.777			0.87656	0.91132	19.549	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.57481	0.61968	NaN	1	1	Median	0.82006	0.79434	NaN	1	0	Median	0.87656	0.91132	NaN	1	0	Median	42851000	26376000	16475000	0	0	0	10414000	8476600	1936900	12934000	6646100	6287400	19504000	11254000	8250600	47291	2286	44507	285547;285548;285549	382937;382938;382939;382940;382941	382939			5	
SPSPPDGSPAATPEIR	0	Unmodified	1577.7686	0.76855009	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.416	36.804	2	0.00051471	32482	160511_QHF_FH_JSI9i_1	67.252	43.898			0.95737	0.96288	10.016	4	0	Median	1.3231	1.0956	NaN	1	0	Median	0.76626	0.86723	NaN	1	0	Median	1.0404	0.99846	NaN	1	0	Median	0.88097	0.92858	NaN	1	0	Median	144080000	70594000	73488000	44222000	17295000	26927000	32059000	18483000	13576000	31925000	15320000	16606000	35876000	19496000	16380000	47292	146	44508	285550;285551;285552;285553	382942;382943;382944;382945	382945			4	
SPSPSSPAAVNHHSSSDISPVSNESTSSSPGK	1	Unmodified	3120.4232	0.42319263	515	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			29.866	28.762	4	4.2841E-07	23888	160511_QHF_FH_JSI10i_3	52.669	50.416			0.92324	1.1257	32.01	3	1	Median	2.1772	1.8932	NaN	1	1	Median	0.91092	1.0904	4.4982	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68592000	27792000	40800000	23968000	3307000	20661000	44624000	24485000	20139000	0	0	0	0	0	0	47293	515	44509	285554;285555;285556	382946;382947;382948;382949;382950	382946			5	
SPSSLLIANLHLQ	0	Unmodified	1391.7773	0.77726428	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	87.559	87.471	2	0.0004298	76105	160511_QHF_FH_JSI12i_3	93.058	76.426			0.73853	0.68791	29.08	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73853	0.68791	NaN	1	0	Median	1.0708	1.1262	8.4406	2	2	Median	55795000	28946000	26849000	0	0	0	0	0	0	12831000	8000300	4830800	42964000	20946000	22018000	47294	3013	44510	285557;285558;285559	382951;382952;382953;382954;382955;382956	382955			6	
SPSSPQQQQQVLNILK	1	Unmodified	1793.9636	0.9635615	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		62.451	62.009	2	1.0378E-11	56328	160511_QHF_FH_JSI11i_1	113.63	87.586			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47295	3886	44511	285560	382957	382957			1	
SPSSSQPLPQVPAPAQSQTQFHVQPQPQPK	1	Unmodified	3220.6265	0.6265243	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	61.155	60.439	3;4	2.4671E-23	55036	160511_QHF_FH_JSI12i_1	112.11	101.11			0.86338	0.8464	27.316	6	2	Median	1.1446	0.93818	12.685	2	0	Median	0.70328	0.83527	NaN	1	0	Median	0.64575	0.60544	NaN	1	1	Median	0.80678	0.83808	47.703	2	1	Median	327220000	172310000	154910000	95294000	39771000	55524000	43276000	26011000	17265000	71236000	30604000	40633000	117410000	75922000	41493000	47296	2723	44512	285561;285562;285563;285564;285565;285566	382958;382959;382960;382961;382962;382963;382964	382959			7	
SPSTTYLHTPTPSEDAAIPSK	1	Unmodified	2199.0695	0.069542713	2351	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		50.735	50.735	3	0.035586	44805	160511_QHF_FH_JSI11i_3	26.361	16.955			1.5059	1.3548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5059	1.3548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34442000	11312000	23130000	0	0	0	0	0	0	34442000	11312000	23130000	0	0	0	47297	2351	44513	285567	382965	382965			1	
SPSWYGIPR	0	Unmodified	1061.5294	0.52942943	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	52.197	51.298	2	0.0015914	42835	160511_QHF_FH_JSI10i_3	68.383	52.943			0.9748	1.0426	11.998	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0028	1.135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94754	0.95784	NaN	1	1	Median	284830000	148830000	136000000	0	0	0	107940000	54206000	53736000	0	0	0	176890000	94625000	82261000	47298	2087	44514	285568;285569	382966;382967	382966			2	
SPTDWALFTYEGNSNDIR	0	Unmodified	2084.9439	0.94394827	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	84.962	84.253	2	3.457E-08	72762	160511_QHF_FH_JSI12i_2	124.86	103.3			0.84423	0.89082	14.101	4	4	Median	0.85863	0.75289	NaN	1	1	Median	0.83007	1.0339	NaN	1	1	Median	0.80009	0.83222	NaN	1	1	Median	0.87772	0.95356	NaN	1	1	Median	106500000	53580000	52924000	17646000	8014600	9631600	19481000	9419200	10062000	36432000	18399000	18033000	32945000	17747000	15198000	47299	5346	44515	285570;285571;285572;285573;285574	382968;382969;382970;382971;382972	382968			5	
SPTFAGGLFSISK	1	Unmodified	1310.6871	0.68705229	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	2	1	1	1	79.938	75.754	2	0.00012386	68044	160511_QHF_FH_JSI12i_3	87.216	60.702			1.1156	1.0871	6.2155	5	1	Median	1.3603	1.1387	4.1575	2	1	Median	0.8703	1.0033	NaN	1	0	Median	1.1156	1.0871	NaN	1	0	Median	1.0254	1.0253	NaN	1	0	Median	614020000	305550000	308480000	185940000	77915000	108020000	114220000	61267000	52948000	86873000	45825000	41049000	227000000	120540000	106460000	47300	3620	44516	285575;285576;285577;285578;285579	382973;382974;382975;382976;382977;382978	382978			6	
SPTLVIAYLMMR	0	Unmodified	1393.7462	0.74616385	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		94.287	86.269	2	7.8371E-13	48262	160513_QHF_FH_JSI9Kac_6	131.45	115.86			0.94817	0.91925	12.483	3	2	Plateau	1.1913	1.0221	NaN	1	0	Median	0.75466	0.90349	NaN	1	1	Median	1.1954	1.1597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	503140000	255940000	247200000	105270000	47187000	58085000	312360000	165730000	146630000	85514000	43021000	42493000	0	0	0	47301	1734	44517	285580;285581;285582	382979;382980;382981;382982	382981			4	
SPTLVIAYLMMR	0	Oxidation (M)	1409.7411	0.74107847	1734	P51452	DUSP3	Dual specificity protein phosphatase 3	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			89.895	84.174	3	0.018659	47833	160513_QHF_FH_JSI10Kac_6	41.684	34.516			1.9708	2.3501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9708	2.3501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33081000	16878000	16203000	0	0	0	33081000	16878000	16203000	0	0	0	0	0	0	47302	1734	44517	285583	382983	382983		1420	1	
SPTLYGISHDDLK	1	Unmodified	1444.7198	0.71980898	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	46.769	45.799	2;3	5.2695E-07	39262	160511_QHF_FH_JSI11i_2	134.13	117.91			0.98542	1.0072	25.763	6	1	Median	0.75204	0.6526	NaN	1	0	Median	0.63961	0.79178	NaN	1	0	Median	1.0012	1.0072	16.302	2	0	Median	1.1131	1.2196	0.25625	2	1	Median	715700000	349160000	366540000	45446000	24598000	20848000	61316000	38605000	22711000	421590000	200240000	221350000	187350000	85723000	101630000	47303	552	44518	285584;285585;285586;285587;285588;285589	382984;382985;382986;382987;382988;382989;382990;382991;382992	382989			9	
SPTPPLFSLPEAR	0	Unmodified	1410.7507	0.75071518	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.958	76.325	2	0.016658	67036	160511_QHF_FH_JSI11i_2	44.543	34.019			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47304	4076	44519	285590	382993	382993			1	
SPTWFGIPR	0	Unmodified	1059.5502	0.55016488	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2.33	0.471		2	1							1	1	1		67.538	66.966	2	0.0007018	59376	160511_QHF_FH_JSI11i_3	75.738	58.353			0.87231	0.80901	3.4981	3	0	Plateau	1.0088	0.86265	NaN	1	0	Median	0.68373	0.8477	NaN	1	0	Median	0.87231	0.80642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	219230000	125600000	93631000	55562000	28294000	27268000	69597000	45373000	24224000	94072000	51934000	42138000	0	0	0	47305	2087	44520	285591;285592;285593	382994;382995	382994			2	
SPVAVQSTK	1	Unmodified	915.50255	0.50254598	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.6	4	3	3		1	2				3	4	3	3	11.322	9.3003	2	0.00010641	7716	160511_QHF_FH_JSI10i_1	93.178	61.242			1.016	1.0559	18.351	13	0	Median	1.1646	0.97768	30.631	3	0	Plateau	0.93383	1.1149	14.057	4	0	Median	1.0757	1.0559	6.3888	3	0	Median	0.87366	0.93768	24.773	3	0	Median	7753200000	3482700000	4270500000	1997400000	962520000	1034900000	2061100000	918160000	1143000000	1795900000	725570000	1070300000	1898800000	876470000	1022300000	47306	2340	44521	285594;285595;285596;285597;285598;285599;285600;285601;285602;285603;285604;285605;285606	382996;382997;382998;382999;383000;383001;383002;383003;383004;383005;383006;383007;383008;383009;383010;383011	383005			16	
SPVDAGK	1	Unmodified	672.34425	0.34425443	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.2127	4.9841	2	0.017903	2871	160511_QHF_FH_JSI12i_1	60.76	36.788			1.0073	1.0741	5.7827	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81204	0.97427	NaN	1	0	Median	1.1076	1.0795	NaN	1	0	Median	1.0073	1.0741	NaN	1	0	Median	6490700000	3369900000	3120700000	0	0	0	2168600000	1150000000	1018600000	2254200000	1175500000	1078700000	2067800000	1044400000	1023400000	47307	4027	44522	285607;285608;285609	383012;383013;383014;383015;383016;383017	383014			6	
SPVDYGTSAGVWSQDK	1	Unmodified	1695.774	0.77402939	4548	Q9BYJ9	YTHDF1	YTH domain-containing family protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.678	50.745	2	8.3177E-08	45887	160511_QHF_FH_JSI11i_1	99.844	86.864			0.86768	0.8169	79.865	2	2	Median	0.54461	0.46442	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3824	1.4369	NaN	1	1	Median	63811000	33023000	30788000	28508000	14325000	14182000	0	0	0	0	0	0	35303000	18698000	16605000	47308	4548	44523	285610;285611;285612;285613	383018;383019;383020;383021	383018			4	
SPVESTTEPPAVR	0	Unmodified	1368.6885	0.68850885	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	5.66	1					2				1		1	1	32.988	26.768	2	3.0598E-07	23270	160511_QHF_FH_JSI9i_1	137.17	124.94			0.67827	0.69316	19.334	3	1	Median	1.1076	0.91701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67827	0.69316	NaN	1	1	Median	0.58813	0.63277	NaN	1	0	Median	208880000	74042000	134830000	198520000	67775000	130750000	0	0	0	6074100	3667000	2407100	4278800	2599400	1679500	47309	1814	44524	285614;285615;285616	383022;383023;383024	383023			3	
SPVFLYEDHTGKPGPEDYPLFR	1	Unmodified	2563.2383	0.23833938	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	77.168	77.035	4	0.001926	66858	160511_QHF_FH_JSI12i_3	43.799	35.611			0.69132	0.68902	29.09	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88775	0.84637	NaN	1	0	Median	0.53835	0.56091	NaN	1	1	Median	113930000	68636000	45291000	0	0	0	0	0	0	56037000	27776000	28261000	57890000	40860000	17030000	47310	1183	44525	285617;285618	383025;383026	383026			1	
SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEK	1	Unmodified	4378.1062	0.10616259	1106	P16989	YBX3	Y-box-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	1	2	69.524	68.896	3;4;5	9.4615E-29	62728	160511_QHF_FH_JSI11i_1	90.02	88.801			0.95254	0.9134	19.396	6	1	Median	0.92682	0.77606	17.976	2	0	Median	0.98304	1.1766	NaN	1	0	Median	0.82688	0.81402	NaN	1	0	Median	0.97394	1.0049	8.4327	2	1	Median	582790000	288600000	294200000	194560000	86769000	107790000	144250000	77813000	66435000	114970000	61111000	53861000	129020000	62903000	66115000	47311	1106	44526	285619;285620;285621;285622;285623;285624;285625;285626	383027;383028;383029;383030;383031;383032;383033;383034;383035;383036;383037;383038;383039;383040	383028			14	
SPVPSAFSDQSR	0	Unmodified	1276.6048	0.60477922	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	4.94	7	2					2			3	4	3	1	35.998	32.932	2	2.2234E-05	29599	160511_QHF_FH_JSI11i_1	89.171	66.592			0.89734	0.96513	21.803	8	3	Median	1.0105	0.83644	31.099	2	1	Median	0.7606	0.90558	24.437	3	1	Plateau	1.0568	1.0208	26.065	2	1	Median	0.84877	0.89379	NaN	1	0	Median	1197000000	680390000	516580000	276720000	144370000	132350000	373760000	233900000	139860000	319810000	182960000	136850000	226680000	119160000	107520000	47312	5474	44527	285627;285628;285629;285630;285631;285632;285633;285634;285635;285636;285637	383041;383042;383043;383044;383045;383046;383047;383048;383049;383050;383051	383042			11	
SPVPVETLK	1	Unmodified	968.55425	0.5542472	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	36.976	36.173	2	0.002543	32830	160511_QHF_FH_JSI12i_1	64.42	32.579			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47313	2804	44528	285638;285639;285640	383052;383053;383054	383053			3	
SPVQEASSATDTDTNSQEDPADTASVSSLSLSTGHTK	1	Unmodified	3720.6722	0.67220926	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	57.528	56.871	4	0.017385	51649	160511_QHF_FH_JSI12i_1	20.71	18.875			1.3687	1.3954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3687	1.3954	NaN	1	1	Median	18640000	4922800	13717000	0	0	0	0	0	0	0	0	0	18640000	4922800	13717000	47314	3013	44529	285641	383055	383055			1	
SPVTFLSDLR	0	Unmodified	1133.6081	0.60807369	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		74.206	74.206	2	0.0035291	66254	160511_QHF_FH_JSI11i_3	56.378	38.47			0.98083	0.8873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98083	0.8873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40346000	20387000	19959000	0	0	0	0	0	0	40346000	20387000	19959000	0	0	0	47315	21	44530	285642	383056	383056			1	
SPVTLTAYIVTSLLGYR	0	Unmodified	1853.0299	0.02985015	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		101.09	93.251	2;3	3.5247E-07	53027	160513_QHF_FH_JSI9Kac_6	113.8	32.819			1.0222	0.99735	7.901	5	1	Median	1.2429	1.0679	2.7256	2	0	Median	0.82818	0.91419	0.2146	2	0	Median	1.0222	0.99735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19752000000	10167000000	9584800000	3723400000	1608600000	2114800000	11060000000	6280600000	4779600000	4968600000	2278200000	2690400000	0	0	0	47316	3173	44531	285643;285644;285645;285646;285647	383057;383058;383059;383060;383061;383062	383059			6	
SPVTLTAYIVTSLLGYRK	1	Unmodified	1981.1248	0.12481317	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	98.615	90.188	2;3	4.6001E-56	54149	160513_QHF_FH_JSI10Kac_6	242.43	221.37			0.90147	0.90548	17.719	8	0	Median	0.90993	0.7756	15.59	2	0	Median	0.72841	0.86759	18.88	2	0	Median	1.0664	1.007	23.99	2	0	Median	0.95609	1.0039	8.2862	2	0	Median	5261100000	2767900000	2493100000	1616500000	855710000	760750000	2488700000	1346800000	1141900000	496210000	220360000	275850000	659710000	345050000	314660000	47317	3173	44532	285648;285649;285650;285651;285652;285653;285654;285655	383063;383064;383065;383066;383067;383068;383069;383070;383071;383072;383073	383073			11	
SPVTNIAR	0	Unmodified	856.47667	0.47666558	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1							1	2	2	2	16.506	16.141	2	0.058997	12961	160511_QHF_FH_JSI11i_2	35.295	13.164			1.0933	1.1728	8.4123	7	0	Median	1.5056	1.2823	NaN	1	0	Median	0.96483	1.169	8.6816	2	0	Median	1.073	1.0632	4.5098	2	0	Median	1.1826	1.2184	5.4005	2	0	Median	1042700000	489840000	552870000	157440000	60129000	97316000	292570000	134570000	158000000	338900000	173670000	165240000	253790000	121470000	132320000	47318	4017	44533	285656;285657;285658;285659;285660;285661;285662	383074	383074			1	
SPVTTLLECMHK	1	Unmodified	1414.6949	0.69485656	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		65.822	65.822	3	8.736E-07	58357	160511_QHF_FH_JSI11i_3	104.24	89.812			0.79029	0.72651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79029	0.72651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	138330000	84718000	53608000	0	0	0	0	0	0	138330000	84718000	53608000	0	0	0	47319	1857	44534	285663	383075	383075			0	
SPVVTIMGHVDHGK	1	Unmodified	1475.7555	0.75548298	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		37.342	37.342	3	0.00072498	32667	160511_QHF_FH_JSI11i_3	46.68	36.046			6.3271	6.096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.3271	6.096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	238350000	21311000	217040000	0	0	0	0	0	0	238350000	21311000	217040000	0	0	0	47320	1584	44535	285664	383076;383077;383078	383077			3	
SPVYLTVLK	1	Unmodified	1018.6063	0.60628277	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.6	3	3	1				2	5	1	2	3	5	5	68.212	62.316	2	0.00019193	53809	160511_QHF_FH_JSI11i_2	85.67	54.441			1.0528	1.0995	30.706	15	1	Median	1.0557	0.89673	0.87749	2	0	Median	1.0519	1.2488	47.341	3	0	Plateau	1.1205	1.1284	18.344	5	0	Median	1.0248	1.1585	27.39	5	1	Median	1347900000	631030000	716820000	234940000	106120000	128820000	105080000	56495000	48582000	624330000	283350000	340980000	383510000	185070000	198440000	47321	1862	44536	285665;285666;285667;285668;285669;285670;285671;285672;285673;285674;285675;285676;285677;285678;285679	383079;383080;383081;383082;383083;383084;383085;383086;383087;383088;383089;383090	383086			12	
SPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQR	0	Unmodified	3863.004	0.0039931111	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.02	98.302	3;4	7.1615E-53	58191	160513_QHF_FH_JSI10Kac_6	155.71	141.91			0.99628	1.1944	6.2548	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99628	1.1944	6.2548	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219260000	113960000	105300000	0	0	0	219260000	113960000	105300000	0	0	0	0	0	0	47322	2362	44537	285680;285681	383091;383092	383092			2	
SPWSNKYDPPLEDGAMPSAR	1	Unmodified	2217.0161	0.016067355	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			60.294	58.767	3	0.0044151	49366	160511_QHF_FH_JSI10i_3	45.094	36.274			1.1357	1.0941	9.0158	2	1	Median	1.467	1.1661	NaN	1	0	Median	0.87923	1.0265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115050000	58202000	56851000	51504000	21330000	30175000	63549000	36872000	26677000	0	0	0	0	0	0	47323	1607	44538	285682;285683	383093;383094;383095	383093			3	
SPYDGNETLLSPEK	1	Unmodified	1548.7308	0.7307676	4522	Q9BXR0	QTRT1	Queuine tRNA-ribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	47.067	46.278	2	0.00037209	41532	160511_QHF_FH_JSI10i_1	99.531	63.006			1.0151	0.98561	17.341	5	5	Median	1.0831	0.88371	15.434	2	2	Median	1.0836	1.2905	NaN	1	1	Median	1.0151	0.99545	NaN	1	1	Median	0.94332	0.96857	NaN	1	1	Median	255360000	126700000	128660000	112090000	54613000	57480000	44704000	20302000	24402000	44103000	20170000	23933000	54458000	31615000	22844000	47324	4522	44539	285684;285685;285686;285687;285688;285689	383096;383097;383098;383099;383100;383101	383099			6	
SPYFLSQLWTAAFK	1	Unmodified	1657.8504	0.85042922	2341	Q13017	ARHGAP5	Rho GTPase-activating protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		96.889	87.783	2	0.0059653	49995	160513_QHF_FH_JSI11Kac_6	60.539	45.337			0.46372	0.39942	NaN	1	0	Median	0.46372	0.39942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111110000	77833000	33278000	111110000	77833000	33278000	0	0	0	0	0	0	0	0	0	47325	2341	44540	285690;285691	383102;383103	383102			2	
SPYLPSAHR	0	Unmodified	1026.5247	0.52467841	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			18.623	17.478	3	0.00028644	14194	160511_QHF_FH_JSI10i_3	70.028	60.44			1.2588	1.2631	17.684	2	0	Median	1.3459	1.1146	NaN	1	0	Median	1.1773	1.4313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154080000	65662000	88420000	71503000	27004000	44499000	82579000	38657000	43921000	0	0	0	0	0	0	47326	1223	44541	285692;285693	383104;383105;383106	383104			3	
SPYLYPLYGLGELPQGFAR	0	Unmodified	2140.0993	0.099326699	1702;1368	P50395;P31150	GDI2;GDI1	Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.98	4	6							6	2	4	4	6	98.832	95.696	2;3	1.328E-104	48067	160513_QHF_FH_JSI11Kac_6	244.44	210.26			1.0103	1.0786	35.113	16	2	Median	1.5642	1.3219	29.209	2	0	Median	0.97001	1.1749	20.103	4	0	Median	1.0058	0.97495	8.9983	4	0	Median	0.93822	0.99062	46.094	6	2	Median	7732100000	3606900000	4125200000	1269900000	535070000	734870000	1587800000	821900000	765860000	1920900000	942820000	978070000	2953500000	1307100000	1646500000	47327	1702;1368	44542	285694;285695;285696;285697;285698;285699;285700;285701;285702;285703;285704;285705;285706;285707;285708;285709	383107;383108;383109;383110;383111;383112;383113;383114;383115;383116;383117;383118;383119;383120	383110			14	
SPYNYLQVAYFK	1	Unmodified	1491.7398	0.73981614	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.567	72.31	2	1.0846E-06	40543	160513_QHF_FH_JSI10Kac_6	121.6	103.34			1.1703	1.0565	56.01	4	2	Median	1.6744	1.4303	NaN	1	0	Median	0.52257	0.6117	NaN	1	1	Median	0.81801	0.78031	NaN	1	0	Median	1.9942	2.0869	NaN	1	1	Median	192010000	92661000	99346000	61797000	22983000	38814000	49784000	35119000	14664000	47709000	24454000	23255000	32718000	10105000	22613000	47328	2806	44543	285710;285711;285712;285713	383121;383122;383123;383124	383124			4	
SPYQEFTDHLVK	1	Unmodified	1462.7092	0.70924429	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.04	6.29	2	9	6					8	2	9	6	6	6	59.02	54.766	2;3	3.7206E-31	47155	160511_QHF_FH_JSI11i_2	184.55	161.23			1.142	1.1711	24.15	20	5	Median	1.381	1.1818	35.95	8	5	Median	1.1	1.2859	11.5	4	0	Median	1.0962	1.094	8.7468	4	0	Median	1.0467	1.1491	7.8016	4	0	Median	12701000000	6363400000	6337400000	3520300000	1462700000	2057600000	2176900000	1251100000	925740000	4603900000	2432400000	2171500000	2399800000	1217200000	1182600000	47329	1084	44544	285714;285715;285716;285717;285718;285719;285720;285721;285722;285723;285724;285725;285726;285727;285728;285729;285730;285731;285732;285733;285734;285735;285736;285737;285738;285739;285740	383125;383126;383127;383128;383129;383130;383131;383132;383133;383134;383135;383136;383137;383138;383139;383140;383141;383142;383143;383144;383145;383146;383147;383148;383149;383150;383151;383152;383153;383154;383155;383156;383157;383158;383159;383160;383161;383162;383163;383164;383165;383166;383167;383168;383169;383170;383171;383172;383173;383174;383175;383176;383177;383178;383179;383180;383181;383182;383183;383184	383162			60	
SPYQEFTDHLVKTHTR	1	Acetyl (K)	1999.9752	0.97518882	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	63.009	53.811	3;4	1.575E-08	29204	160513_QHF_FH_JSI11Kac_6	118.24	104.2			0.3132	0.29265	106.34	5	1	Median	NaN	NaN	NaN	0	0	Median	1.583	1.8984	8.8489	2	0	Median	0.29314	0.27822	7.1488	2	0	Median	0.2421	0.26369	NaN	1	1	Median	367480000	238950000	128540000	0	0	0	100640000	36479000	64163000	255720000	192590000	63131000	11124000	9883400	1241000	47330	1084	44545	285741;285742;285743;285744;285745	383185;383186;383187;383188;383189;383190	383186	930		6	
SPYTVTVGQACNPSACR	0	Unmodified	1866.8353	0.83526622	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.62	5	5					1			4	2	3	2	41.654	39.389	2	2.7509E-40	35373	160511_QHF_FH_JSI10i_1	202.32	171.71			1.0514	1.0861	17.774	6	1	Median	1.3278	1.0875	NaN	1	1	Median	0.98052	1.1472	NaN	1	0	Median	0.97787	0.98371	8.4052	3	0	Median	1.4624	1.5352	NaN	1	0	Median	290670000	132190000	158480000	22007000	8843900	13163000	83689000	43361000	40328000	106930000	49408000	57522000	78041000	30573000	47467000	47331	1192	44546	285746;285747;285748;285749;285750;285751;285752;285753;285754;285755;285756	383191;383192;383193;383194;383195;383196;383197;383198;383199;383200;383201;383202;383203;383204;383205	383197			15	
SQAADQITK	1	Unmodified	960.48762	0.4876242	4122	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	9.5545	9.189	2	0.00012372	6961	160511_QHF_FH_JSI10i_1	91.658	56.851			1.0406	1.0497	16.706	4	0	Median	1.5251	1.2496	NaN	1	0	Median	0.77201	0.89861	NaN	1	0	Median	0.94329	0.93006	NaN	1	0	Median	1.148	1.1847	NaN	1	0	Median	609020000	345960000	263050000	123540000	67335000	56209000	138390000	92460000	45930000	176060000	86010000	90050000	171020000	100160000	70862000	47332	4122	44547	285757;285758;285759;285760;285761	383206;383207;383208;383209	383209			4	
SQAALQK	1	Unmodified	744.413	0.41300269	3006	Q5XKP0	QIL1	Protein QIL1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.9	5.32	4	3				3				1	2	4	3	6.3413	4.458	2	0.004105	3625	160511_QHF_FH_JSI11i_1	100.19	68.899			1.1742	1.1723	21.768	9	3	Median	1.3772	1.1256	NaN	1	0	Median	0.92425	1.1096	9.1486	2	0	Median	1.2375	1.19	7.483	3	1	Median	0.63218	0.67623	39.459	3	2	Plateau	1687600000	817030000	870540000	310190000	166170000	144020000	420870000	197150000	223720000	510830000	231180000	279650000	445670000	222530000	223140000	47333	3006	44548	285762;285763;285764;285765;285766;285767;285768;285769;285770;285771	383210;383211;383212;383213;383214;383215;383216;383217	383210			8	
SQAASILTK	1	Unmodified	917.5182	0.51819605	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		23.941	23.346	2	0.0011956	19326	160511_QHF_FH_JSI11i_2	79.148	54.15			0.55215	0.61572	85.724	4	4	Median	0.22316	0.19085	NaN	1	1	Median	0.29436	0.35988	NaN	1	1	Median	1.0807	1.0789	3.3716	2	2	Median	NaN	NaN	NaN	0	0	Median	571800000	390040000	181760000	194030000	154120000	39916000	136890000	107220000	29667000	240870000	128700000	112170000	0	0	0	47334	679	44549	285772;285773;285774;285775	383218;383219;383220;383221	383220			4	
SQACEPSEPEIEIK	1	Unmodified	1615.74	0.73995207	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.297	43.904	2	5.9158E-05	39701	160511_QHF_FH_JSI11i_1	74.392	49.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47335	1273	44550	285776	383222	383222			1	
SQAEDVRVEGSFPVTMLPGDGVGPELMHAVK	1	Unmodified	3251.5955	0.59548345	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	95.544	95.464	4	6.5927E-17	82764	160511_QHF_FH_JSI12i_3	89.954	84.174			0.94626	0.97365	9.4261	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93795	1.1582	NaN	1	0	Median	1.0794	0.99628	NaN	1	0	Median	0.94626	0.97365	NaN	1	0	Median	195230000	100870000	94358000	0	0	0	29143000	14226000	14917000	53417000	26012000	27405000	112670000	60635000	52036000	47336	386	44551	285777;285778;285779	383223;383224;383225;383226;383227;383228;383229	383228			7	
SQAEEEIDEIRK	1	Unmodified	1445.6998	0.69980182	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		31.369	30.98	2	0.015223	26262	160511_QHF_FH_JSI11i_2	59.426	50.894			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4967000	0	4967000	0	0	0	0	0	0	4967000	0	4967000	0	0	0	47337	2938	44552	285780	383230	383230			1	
SQAEFEK	1	Acetyl (Protein N-term)	879.39741	0.39741221	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.13	4			3	1					1	1	2	4	25.46	21.7	2	4.6088E-05	19413	160511_QHF_FH_JSI12i_1	94.407	90.554			1.0267	1.0231	88.179	7	1	Median	1.2954	1.0235	NaN	1	0	Median	0.86899	1.0231	NaN	1	0	Median	1.0629	1.0368	3.395	2	0	Median	0.88623	0.92051	134.39	3	1	Median	4336300000	2100300000	2236000000	1049300000	497490000	551780000	953080000	503490000	449590000	963560000	434310000	529250000	1370400000	665000000	705360000	47338	863	44553	285781;285782;285783;285784;285785;285786;285787;285788	383231;383232;383233;383234;383235;383236;383237;383238;383239;383240;383241;383242;383243	383233			13	
SQAEFEKAAEEVR	1	Acetyl (K);Acetyl (Protein N-term)	1576.7369	0.73691561	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11.3	0.471				2	1						1		2	76.784	68.355	2	8.0539E-07	26853	160513_QHF_FH_JSI12Kacf_1	121.04	110.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47339	863	44554	285789;285790;285791	383244;383245;383246	383244	557		3	
SQAEIINALLK	1	Unmodified	1198.6921	0.69213767	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	78.189	77.499	2	6.9265E-08	68034	160511_QHF_FH_JSI11i_2	125.74	98.411			0.91471	0.91388	20.423	5	3	Median	0.91471	0.78051	NaN	1	1	Median	0.837	1.0072	13.755	2	1	Median	0.7006	0.69459	NaN	1	0	Median	0.96291	1.0857	NaN	1	1	Median	173880000	107240000	66646000	24794000	13092000	11701000	48953000	27720000	21233000	63869000	43029000	20841000	36268000	23397000	12871000	47340	3274	44555	285792;285793;285794;285795;285796	383247;383248;383249;383250	383249			4	
SQAFIEMETR	0	Unmodified	1210.5652	0.56522259	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.8	6.37		4						6		3	3	2	2	48.087	42.327	2	1.4326E-07	36226	160511_QHF_FH_JSI12i_2	120.09	85.838			0.91512	0.9811	27.531	8	3	Median	0.78418	0.6786	36.504	2	0	Median	0.91512	1.0932	6.9065	2	1	Median	1.0694	1.0653	9.9574	2	1	Median	0.74191	0.80699	25.934	2	1	Median	811660000	399950000	411710000	131330000	63228000	68104000	154230000	96394000	57835000	310930000	133560000	177370000	215170000	106770000	108400000	47341	1556	44556	285797;285798;285799;285800;285801;285802;285803;285804;285805;285806	383251;383252;383253;383254;383255;383256;383257;383258;383259;383260;383261;383262;383263;383264	383252			14	
SQAFIEMETR	0	Oxidation (M)	1226.5601	0.56013721	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		36.18	26.36	2	0.017076	15414	160513_QHF_FH_JSI11Kac_5	46.891	42.279			0.91392	0.90468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91392	0.90468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2979300	1716300	1263000	0	0	0	0	0	0	2979300	1716300	1263000	0	0	0	47342	1556	44556	285807	383265	383265		1225	1	
SQAFTLLLWVTK	1	Unmodified	1405.7969	0.79693709	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	1	3	2	1	95.306	87.19	2	1.9459E-19	48836	160513_QHF_FH_JSI9Kac_6	158.4	146.53			0.85777	0.84103	10.85	6	4	Median	0.87845	0.74824	NaN	1	0	Median	0.73406	0.87229	15.476	2	2	Median	0.89104	0.84103	9.4458	2	2	Median	0.8972	0.93039	NaN	1	0	Median	672560000	377480000	295090000	92347000	46718000	45629000	189550000	105890000	83664000	271910000	159680000	112230000	118750000	65189000	53562000	47343	4258	44557	285808;285809;285810;285811;285812;285813;285814	383266;383267;383268;383269;383270;383271;383272;383273;383274	383270			9	
SQAGVSSGAPPGR	0	Unmodified	1169.5789	0.57889882	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.63	10.044	2	0.00010577	7798	160511_QHF_FH_JSI12i_1	92.112	65.323			1.12	1.0357	17.53	2	0	Median	1.1153	0.91495	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1246	1.1724	NaN	1	0	Median	62685000	27190000	35495000	24156000	10387000	13769000	0	0	0	0	0	0	38529000	16803000	21726000	47344	2587	44558	285815;285816	383275;383276;383277	383276			2	
SQAIHQLK	1	Unmodified	923.51886	0.51886475	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	1	3	5	8.9607	6.9375	2;3	0.0016751	5473	160511_QHF_FH_JSI12i_3	99.802	52.735			1.5593	1.5904	59.241	8	4	Median	1.7133	1.4591	142.29	2	1	Median	1.1018	1.3483	NaN	1	0	Median	2.128	2.0381	11.723	2	2	Median	1.3257	1.3423	31.172	3	1	Median	2652400000	1099500000	1552800000	183540000	80495000	103050000	582010000	291960000	290050000	770290000	237820000	532470000	1116500000	489250000	627280000	47345	2614	44559	285817;285818;285819;285820;285821;285822;285823;285824;285825;285826;285827	383278;383279;383280;383281;383282;383283;383284;383285;383286;383287	383285			10	
SQAIHQLKVNGEDPYPHK	2	Acetyl (K)	2102.0545	0.054501772	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		48.99	39.288	4	0.020389	21329	160513_QHF_FH_JSI11Kac_6	32.156	23.109			0.4442	0.42101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4442	0.42101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17474000	12385000	5088400	0	0	0	0	0	0	17474000	12385000	5088400	0	0	0	47346	2614	44560	285828	383288	383288	2582		1	
SQAIYLESK	1	Unmodified	1037.5393	0.53932542	4769	Q9H7L9	SUDS3	Sin3 histone deacetylase corepressor complex component SDS3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.97	27.697	2	0.001617	24091	160511_QHF_FH_JSI9i_1	70.552	53.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47347	4769	44561	285829	383289	383289			1	
SQAKYGISGEK	2	Acetyl (K)	1208.6037	0.60371659	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		30.41	21.764	2	0.034769	13387	160513_QHF_FH_JSI11Kac_3	51.927	27.151			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1922900	1922900	0	0	0	0	0	0	0	1922900	1922900	0	0	0	0	47348	4237	44562	285830	383290	383290			1	
SQALEFPDQPDIAEDLK	1	Unmodified	1914.9211	0.92108756	4224	Q96RR4	CAMKK2	Calcium/calmodulin-dependent protein kinase kinase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			82.279	82.128	2	7.1598E-05	74573	160511_QHF_FH_JSI10i_1	78.763	56.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47349	4224	44563	285831	383291	383291			1	
SQALELNKR	1	Acetyl (K)	1099.5986	0.59857163	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		28.353	20.345	2	0.030693	12695	160513_QHF_FH_JSI11Kac_4	61.999	12.581			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3534700	3534700	0	0	0	0	0	0	0	3534700	3534700	0	0	0	0	47350	482	44564	285832	383292	383292			1	
SQALLFIK	1	Unmodified	918.55385	0.55385327	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.61		5						4	1	4	2	2	2	66.546	60.963	2	0.0018537	53299	160511_QHF_FH_JSI9i_2	84.498	65.021			1.1163	1.0166	18.066	10	1	Median	1.1327	0.91466	13.503	4	1	Median	1.0657	1.2848	17.917	2	0	Median	1.029	1.0308	6.8085	2	0	Median	1.0153	1.1002	16.659	2	0	Median	362250000	180260000	182000000	135290000	61522000	73769000	67867000	35491000	32376000	99804000	50132000	49672000	59290000	33112000	26178000	47351	3888	44565	285833;285834;285835;285836;285837;285838;285839;285840;285841;285842	383293;383294;383295;383296;383297;383298;383299;383300	383295			8	
SQAPGISLPGVLVGNK	1	Unmodified	1535.8671	0.86714192	4492	Q9BW83	IFT27	Intraflagellar transport protein 27 homolog	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0.707	1	2	1							2		1	1	79.205	78.773	2	8.5008E-05	68329	160511_QHF_FH_JSI12i_3	86.772	77.874			1.3098	1.1823	13.501	3	0	Plateau	1.2561	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2173	1.1823	NaN	1	0	Median	1.3657	1.4151	NaN	1	0	Median	65777000	30625000	35153000	23841000	12354000	11487000	0	0	0	16918000	7267100	9651200	25018000	11003000	14015000	47352	4492	44566	285843;285844;285845;285846	383301;383302	383302			2	
SQAPGQPGASQWGSR	0	Unmodified	1512.707	0.70695288	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.25	3	4	3				2	1		2	4	4	3	24.876	22.609	2	5.3309E-17	19803	160511_QHF_FH_JSI10i_1	149.41	101.84			0.98584	1.0935	14.923	10	0	Median	1.3127	1.1171	NaN	1	0	Median	0.8738	1.0314	10.217	2	0	Median	1.1129	1.0975	19.68	4	0	Median	1.0628	1.1319	16.12	3	0	Plateau	709260000	351090000	358170000	82214000	36538000	45676000	73740000	38254000	35486000	260480000	128660000	131810000	292830000	147640000	145190000	47353	4053	44567	285847;285848;285849;285850;285851;285852;285853;285854;285855;285856;285857;285858;285859	383303;383304;383305;383306;383307;383308;383309;383310;383311;383312;383313;383314;383315;383316;383317;383318;383319;383320;383321;383322;383323;383324	383314			22	
SQAQQPQK	1	Unmodified	913.46174	0.4617438	2818	Q3MHD2	LSM12	Protein LSM12 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									4	2	1	3	3.2222	2.8403	2	3.8035E-05	1399	160511_QHF_FH_JSI10i_1	137.18	76.391			1.0167	0.94877	53.538	10	2	Median	0.9788	0.78896	38.009	4	0	Median	0.63103	0.75236	103.35	2	0	Median	1.0227	1.0102	NaN	1	0	Median	1.0108	1.0318	66.626	3	2	Median	745120000	412960000	332170000	116900000	71922000	44979000	236890000	146640000	90245000	136110000	69903000	66208000	255220000	124490000	130730000	47354	2818	44568	285860;285861;285862;285863;285864;285865;285866;285867;285868;285869	383325;383326;383327;383328;383329;383330;383331;383332;383333;383334;383335;383336	383334			12	
SQASTTVDINTQVEK	1	Unmodified	1619.8002	0.80024414	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			35.323	34.97	2	0.00033096	31561	160511_QHF_FH_JSI10i_1	99.991	85.833			0.78017	0.87768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78017	0.87768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30224000	13228000	16996000	0	0	0	30224000	13228000	16996000	0	0	0	0	0	0	47355	2557	44569	285870	383337	383337			1	
SQDAEVGDGTTSVTLLAAEFLK	1	Unmodified	2251.122	0.12197221	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	101.92	101.82	2;3	0	92610	160511_QHF_FH_JSI10i_1	484.41	447.56			0.9672	0.93105	14.12	9	0	Median	1.0669	0.87405	12.273	2	0	Median	0.78252	0.93105	19.75	3	0	Median	0.95765	0.93771	17.311	2	0	Median	0.88293	0.94205	12.842	2	0	Median	6863700000	3574800000	3288900000	1059100000	487320000	571820000	2493200000	1397100000	1096100000	1618100000	807850000	810240000	1693200000	882500000	810720000	47356	4321	44570	285871;285872;285873;285874;285875;285876;285877;285878;285879	383338;383339;383340;383341;383342;383343;383344;383345;383346;383347;383348;383349;383350;383351	383346			14	
SQDATFSPGSEQAEK	1	Unmodified	1580.6954	0.69544472	3356	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				23.388	22.182	2	4.3187E-17	18929	160511_QHF_FH_JSI9i_1	127.76	98.013			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47357	3356	44571	285880	383352	383352			1	
SQDDAMVDYFFQR	0	Unmodified	1620.6879	0.68785692	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	83.603	83.095	2	0.01419	75731	160511_QHF_FH_JSI12i_1	45.077	36.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47358	2555	44572	285881	383353	383353			1	
SQDDEIGDGTTGVVVLAGALLEEAEQLLDR	0	Unmodified	3112.5412	0.5411825	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.71	99.991	3	1.9184E-106	59246	160513_QHF_FH_JSI10Kac_6	219.65	199.77			0.94065	1.1289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94065	1.1289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	486740000	226270000	260480000	0	0	0	486740000	226270000	260480000	0	0	0	0	0	0	47359	1630	44573	285882	383354	383354			1	
SQDFGNLFSFPSYSQK	1	Unmodified	1850.8475	0.84752869	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	91.397	90.848	2	1.7105E-12	80715	160511_QHF_FH_JSI10i_2	115.78	101.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47360	2197	44574	285883;285884;285885	383355;383356;383357	383357			3	
SQDFYEK	1	Unmodified	915.39741	0.39741221	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	16.564	16.091	2	0.010802	13564	160511_QHF_FH_JSI10i_1	73.26	55.412			0.98839	0.91159	17.395	4	0	Median	1.0643	0.87424	NaN	1	0	Median	0.73995	0.86828	NaN	1	0	Median	1.2941	1.2576	NaN	1	0	Median	0.91789	0.95053	NaN	1	0	Median	507100000	264400000	242700000	108680000	50592000	58083000	146580000	88938000	57643000	125370000	53543000	71824000	126470000	71324000	55147000	47361	3500	44575	285886;285887;285888;285889	383358	383358			1	
SQDFYEKEK	2	Acetyl (K)	1214.5455	0.54553301	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		36.427	27.491	2	0.030391	16065	160513_QHF_FH_JSI11Kac_3	58.676	28.867			5.6736	5.5797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.6736	5.5797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7925800	1571900	6353900	0	0	0	0	0	0	7925800	1571900	6353900	0	0	0	47362	3500	44576	285890	383359	383359			1	
SQDGSHLLK	1	Unmodified	983.50361	0.50360861	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10.54	10.339	2	0.017623	7870	160511_QHF_FH_JSI11i_2	44.98	19.041			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47363	212	44577	285891	383360	383360			1	
SQDHFHVFVGDLSPEITTEDIK	1	Unmodified	2513.2074	0.20743318	1375	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	80.704	80.478	3	0.00024714	69890	160511_QHF_FH_JSI12i_3	51.834	43.444			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47364	1375	44578	285892	383361	383361			1	
SQDIYLR	0	Unmodified	893.46068	0.46068117	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	2	3	3	25.701	24.217	2	0.00033243	21151	160511_QHF_FH_JSI11i_1	136.11	51.87			0.98086	1.0063	11.635	11	0	Median	1.21	0.996	11.581	3	0	Median	0.92816	1.1033	4.1977	2	0	Median	1.0582	1.0352	7.4694	3	0	Median	0.85553	0.90952	12.233	3	0	Median	8376800000	4116600000	4260100000	1889200000	829840000	1059400000	1998500000	1074700000	923790000	2772900000	1334500000	1438400000	1716200000	877580000	838630000	47365	2250	44579	285893;285894;285895;285896;285897;285898;285899;285900;285901;285902;285903	383362;383363;383364;383365;383366;383367;383368;383369;383370;383371;383372;383373;383374;383375;383376;383377;383378	383363			17	
SQDNVIK	1	Unmodified	802.41848	0.418482	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	9.188	5.8778	2	0.0046439	6014	160511_QHF_FH_JSI12i_1	97.798	40.517			0.89498	0.95427	7.6671	7	0	Median	1.2467	0.99564	NaN	1	0	Median	0.7957	0.93488	1.3823	2	0	Median	1.1167	1.0967	3.9153	2	0	Median	0.86704	0.93934	2.2312	2	0	Median	5365800000	2780000000	2585800000	1221800000	522190000	699650000	1513400000	839400000	674000000	1285300000	632280000	653050000	1345300000	786170000	559110000	47366	1844	44580	285904;285905;285906;285907;285908;285909;285910	383379;383380;383381;383382;383383;383384;383385;383386;383387;383388;383389;383390;383391	383380			13	
SQDPTPPSAPQEATEGSK	1	Unmodified	1825.833	0.83300084	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.049	25.481	2	3.465E-16	21924	160511_QHF_FH_JSI9i_1	160.27	151.32			1.0219	0.91739	17.248	4	0	Median	1.1131	0.89223	NaN	1	0	Median	0.62594	0.73514	NaN	1	0	Median	0.98284	0.94326	NaN	1	0	Median	1.0626	1.1171	NaN	1	0	Median	172930000	93429000	79506000	41052000	18128000	22924000	56338000	38709000	17629000	33166000	14783000	18383000	42379000	21809000	20570000	47367	5460	44581	285911;285912;285913;285914	383392;383393;383394;383395;383396;383397;383398;383399	383399			8	
SQDQDSEVNELSR	0	Unmodified	1505.6594	0.65939357	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	22.853	22.319	2	1.3327E-31	19505	160511_QHF_FH_JSI12i_1	171.05	127.75			1.3781	1.3766	17.837	4	4	Median	2.3242	1.9361	NaN	1	1	Median	1.118	1.3277	NaN	1	1	Median	1.4505	1.4088	NaN	1	1	Median	1.3093	1.3451	NaN	1	1	Median	335620000	111960000	223670000	86991000	22414000	64578000	63362000	27972000	35390000	96568000	30438000	66130000	88701000	31132000	57569000	47368	3341	44582	285915;285916;285917;285918;285919;285920	383400;383401;383402;383403;383404;383405	383403			6	
SQDQFSDMR	0	Unmodified	1112.4557	0.45567214	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	20.489	20.204	2	7.6609E-11	17476	160511_QHF_FH_JSI10i_1	139.02	115.98			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47369	3799	44583	285921;285922;285923;285924	383406;383407;383408;383409	383409			4	
SQDQFSDMR	0	Oxidation (M)	1128.4506	0.45058677	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	1	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	20.782	20.266	2	0.0012819	17685	160511_QHF_FH_JSI12i_1	72.928	59.349			1.5187	1.6317	11.979	4	0	Linear	1.5112	1.2305	NaN	1	0	Median	1.1499	1.3295	NaN	1	0	Median	1.5262	1.5006	NaN	1	0	Median	1.5467	1.6075	NaN	1	0	Median	109690000	49980000	59706000	24348000	11174000	13173000	27312000	12254000	15058000	27386000	11286000	16100000	30640000	15265000	15375000	47370	3799	44583	285925;285926;285927;285928	383410;383411	383410		2295	2	
SQDSMSSDTAR	0	Unmodified	1183.4775	0.4775298	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	6.7145	4.0483	2	1.0469E-29	4069	160511_QHF_FH_JSI10i_1	190.57	177.94			0.96117	0.94611	14.083	6	0	Median	1.2018	0.987	NaN	1	0	Median	0.68637	0.82004	14.242	2	0	Median	0.97805	0.93872	12.001	2	0	Median	1.0351	1.103	NaN	1	0	Median	1130000000	592270000	537770000	186840000	86680000	100160000	292830000	156010000	136820000	307710000	155130000	152580000	342660000	194450000	148210000	47371	1254	44584	285929;285930;285931;285932;285933;285934	383412;383413;383414;383415;383416;383417;383418;383419;383420	383417			9	
SQDTVLMNLYK	1	Unmodified	1310.654	0.6540376	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	63.656	62.946	2	7.4279E-07	57005	160511_QHF_FH_JSI11i_1	120.77	101.67			1.3413	1.2845	12.228	3	3	Median	1.3413	1.1108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3211	1.2845	NaN	1	1	Median	1.3445	1.4164	NaN	1	1	Median	339040000	156300000	182740000	76328000	35068000	41261000	0	0	0	168800000	76795000	92006000	93912000	44442000	49470000	47372	2795	44585	285935;285936;285937	383421;383422;383423	383421			3	
SQDVDQLR	0	Unmodified	959.46722	0.46722311	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.134	13.705	2	0.0074813	11463	160511_QHF_FH_JSI12i_1	58.433	30.551			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47373	2789	44586	285938	383424	383424			1	
SQDVELWEGEVVK	1	Unmodified	1516.7409	0.74093835	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	66.194	65.504	2	1.1146E-06	59294	160511_QHF_FH_JSI10i_1	88.101	58.334			1.0049	1.0214	31.172	3	2	Median	0.74828	0.62222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1406	1.1061	NaN	1	1	Median	1.0049	1.0214	NaN	1	0	Median	437670000	216410000	221260000	85600000	52468000	33132000	0	0	0	167230000	81005000	86227000	184840000	82937000	101910000	47374	5293	44587	285939;285940;285941;285942;285943	383425;383426;383427;383428;383429;383430	383428			6	
SQDWGSAGLGGVFK	1	Unmodified	1407.6783	0.67827852	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		69.968	69.54	2	3.1642E-07	63103	160511_QHF_FH_JSI10i_1	90.653	64.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47375	4750	44588	285944;285945	383431;383432	383431			2	
SQEAQSLQQQR	0	Unmodified	1301.6324	0.63239096	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.4838	9.12	2	1.2651E-18	6636	160511_QHF_FH_JSI9i_1	167.12	121.38			0.90391	1.0489	17.98	3	0	Median	1.524	1.2317	NaN	1	0	Median	0.90391	1.0489	NaN	1	0	Median	0.88647	0.86023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	248560000	123560000	125000000	68897000	29465000	39432000	103500000	53079000	50418000	76172000	41017000	35155000	0	0	0	47376	2270	44589	285946;285947;285948;285949	383433;383434;383435;383436;383437	383437			5	
SQEATEAAPSCVGDMADTPR	0	Unmodified	2091.8837	0.88373255	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.33	41.968	2	6.3127E-09	37902	160511_QHF_FH_JSI11i_1	142.1	129.12			0.77026	0.7495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77026	0.7495	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14630000	8957800	5672000	0	0	0	0	0	0	14630000	8957800	5672000	0	0	0	47377	5298	44590	285950	383438	383438			1	
SQEDQLSR	0	Unmodified	961.44649	0.44648767	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	1					1					1	1		7.9395	4.1624	2	0.024626	5131	160511_QHF_FH_JSI10i_1	42.864	8.6782			1.0783	1.1581	32.226	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2359	1.4545	NaN	1	0	Median	0.94083	0.9221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117620000	50445000	67180000	0	0	0	113740000	48459000	65277000	3888600	1985800	1902800	0	0	0	47378	4873	44591	285951;285952	383439;383440	383440			2	
SQEGDSISVIGR	0	Unmodified	1246.6153	0.61534391	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.224	33.832	2	0.0001118	30283	160511_QHF_FH_JSI10i_1	87.667	46.638			1.2117	1.1744	15.33	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95356	1.1477	NaN	1	0	Median	1.2117	1.1744	NaN	1	0	Median	1.4681	1.5129	NaN	1	0	Median	277630000	180890000	96734000	0	0	0	64903000	32174000	32729000	165870000	127170000	38699000	46852000	21546000	25306000	47379	594	44592	285953;285954;285955	383441;383442;383443;383444	383444			4	
SQEGKPK	2	Acetyl (K)	814.41848	0.418482	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					2	2					2	1	1	6.1949	-1.0524	2	0.0088954	2189	160513_QHF_FH_JSI12Kac_3	89.55	28.762			1.1706	1.3932	97.044	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1706	1.3932	4.0918	2	0	Median	0.54263	0.53337	NaN	1	0	Median	5.0839	5.628	NaN	1	1	Median	55430000	23811000	31619000	0	0	0	33744000	16283000	17461000	5950900	4071500	1879500	15736000	3457200	12278000	47380	1181	44593	285956;285957;285958;285959	383445;383446;383447	383446	1038		3	
SQEGSQFVK	1	Unmodified	1008.4876	0.4876242	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			2	2	2	3	17.625	14.066	2	2.5464E-08	11915	160511_QHF_FH_JSI10i_1	149.72	114.91			0.85636	0.92517	11.273	9	0	Median	1.3137	1.0842	21.674	2	0	Median	0.80476	0.94191	10.011	2	0	Median	0.95131	0.92863	0.52766	2	0	Median	0.85263	0.90531	0.58597	3	0	Plateau	3439600000	1824300000	1615300000	864800000	428460000	436340000	816070000	451790000	364280000	905560000	479180000	426380000	853130000	464840000	388290000	47381	2010	44594	285960;285961;285962;285963;285964;285965;285966;285967;285968	383448;383449;383450;383451;383452;383453;383454;383455;383456;383457;383458;383459;383460	383454			13	
SQELEVK	1	Unmodified	831.4338	0.43379771	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	13.966	13.6	2	0.0026555	10938	160511_QHF_FH_JSI11i_1	103.83	52.046			1.0384	1.1161	39.672	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2642	1.4898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81888	0.87113	35.041	2	1	Median	1538400000	728450000	809930000	0	0	0	532790000	260630000	272160000	0	0	0	1005600000	467820000	537770000	47382	2517	44595	285969;285970;285971;285972;285973	383461;383462;383463;383464;383465	383461			5	
SQEMVHLVNK	1	Unmodified	1183.6019	0.60194245	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.69		8	2					3	5	5	3	7	3	30.673	26.098	2;3	2.0142E-07	22551	160511_QHF_FH_JSI10i_2	120.09	102.18			0.9306	0.92131	37.909	16	4	Median	1.2017	1.0237	26.621	5	1	Median	0.79324	0.95665	23.996	3	0	Median	0.92648	0.94884	50.9	6	3	Median	0.54814	0.61241	24.208	2	0	Median	2712300000	1452400000	1259900000	420500000	215830000	204670000	156790000	99764000	57023000	1698300000	853860000	844450000	436670000	282930000	153740000	47383	1089	44596	285974;285975;285976;285977;285978;285979;285980;285981;285982;285983;285984;285985;285986;285987;285988;285989;285990;285991	383466;383467;383468;383469;383470;383471;383472;383473;383474;383475;383476;383477;383478;383479;383480;383481;383482;383483;383484;383485;383486;383487	383484			22	
SQEMVHLVNK	1	Oxidation (M)	1199.5969	0.59685707	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		5								1	1	1	2	26.983	26.02	2;3	0.00075466	21810	160511_QHF_FH_JSI12i_2	72.643	63.249			1.0072	1.0493	71.293	4	1	Median	NaN	NaN	NaN	0	0	Median	0.29079	0.36132	NaN	1	1	Median	0.90234	0.89747	NaN	1	0	Median	1.4226	1.5494	33.02	2	0	Median	191980000	111800000	80180000	0	0	0	60386000	48436000	11950000	30278000	16111000	14167000	101320000	47258000	54063000	47384	1089	44596	285992;285993;285994;285995;285996	383488;383489;383490;383491	383489		737	4	
SQENILQGFSTSHK	1	Unmodified	1574.7689	0.76888444	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	44.992	44.871	3	0.0011321	38392	160511_QHF_FH_JSI12i_3	49.595	44.793			0.9852	0.95165	11.688	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92679	0.87616	NaN	1	0	Median	1.0473	1.0336	NaN	1	0	Median	66251000	34928000	31323000	0	0	0	0	0	0	22964000	14721000	8243500	43287000	20207000	23080000	47385	3336	44597	285997;285998	383492	383492			1	
SQENKGEDAPLDQGSGAILASTFSK	2	Unmodified	2549.2245	0.22453981	1889	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	68.082	67.469	3	1.8031E-05	61515	160511_QHF_FH_JSI12i_1	55.469	47.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17132000	17132000	0	0	0	0	0	0	0	0	0	0	17132000	17132000	0	47386	1889	44598	285999	383493	383493			1	
SQENLGNPSK	1	Unmodified	1072.5149	0.51490158	4647	Q9H0X4	ITFG3	Protein ITFG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	10.09	8.3297	2	1.082E-07	6867	160511_QHF_FH_JSI11i_1	121.9	96.976			0.80778	0.76875	8.1899	5	3	Median	0.93376	0.78954	NaN	1	1	Median	0.64803	0.76875	NaN	1	0	Median	0.75432	0.71037	9.7619	2	1	Median	0.80778	0.82431	NaN	1	1	Median	253670000	133750000	119930000	64738000	33648000	31090000	63225000	28731000	34494000	69122000	41529000	27593000	56588000	29839000	26748000	47387	4647	44599	286000;286001;286002;286003;286004	383494;383495;383496;383497;383498;383499;383500	383494			7	
SQEQEVLER	0	Unmodified	1116.5411	0.54111633	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				17.963	16.864	2	0.0022018	13774	160511_QHF_FH_JSI9i_1	65.719	24.69			1.3621	1.1205	NaN	1	0	Median	1.3621	1.1205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	806820000	351970000	454860000	806820000	351970000	454860000	0	0	0	0	0	0	0	0	0	47388	5380	44600	286005	383501	383501			1	
SQEQILEILR	0	Unmodified	1227.6823	0.68230126	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		73.269	72.571	2	2.396E-09	63627	160511_QHF_FH_JSI11i_2	129.16	88.127			0.94256	1.0656	7.4005	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81248	1.0113	NaN	1	1	Median	1.0935	1.1228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	258230000	140350000	117880000	0	0	0	98534000	56836000	41698000	159700000	83510000	76186000	0	0	0	47389	1016	44601	286006;286007	383502;383503	383502			2	
SQEQLAAELAEYTAK	1	Unmodified	1650.8101	0.81008055	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.72	0.731	8	7	3							5	6	4	3	73.405	72.707	2;3	5.9801E-117	64669	160511_QHF_FH_JSI9i_1	276.97	233.2			0.90457	0.939	12.24	16	3	Median	1.0695	0.89084	8.3134	4	0	Median	0.78519	0.93966	12.235	5	1	Median	1.0428	1.0327	17.598	4	2	Median	0.88231	0.93938	8.6787	3	0	Plateau	3754200000	1856000000	1898200000	922370000	384970000	537400000	1170500000	573160000	597300000	773350000	423770000	349580000	888060000	474100000	413960000	47390	1073	44602	286008;286009;286010;286011;286012;286013;286014;286015;286016;286017;286018;286019;286020;286021;286022;286023;286024;286025	383504;383505;383506;383507;383508;383509;383510;383511;383512;383513;383514;383515;383516;383517;383518;383519;383520;383521;383522;383523;383524;383525;383526;383527;383528;383529;383530;383531;383532;383533;383534;383535;383536;383537;383538;383539;383540;383541;383542;383543;383544;383545;383546	383532			42	
SQERPTFYR	0	Acetyl (Protein N-term)	1224.5887	0.58873523	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		28.629	27.85	2	0.00016611	24433	160511_QHF_FH_JSI10i_2	88.136	63.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47391	2736	44603	286026;286027;286028	383547;383548;383549	383549			3	
SQERVEGK	1	Unmodified	931.47231	0.47230849	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	4	12								5	4	3	4	0.70656	0.36901	2;3	0.0015128	161	160511_QHF_FH_JSI9i_2	65.305	34.076			0.8749	0.86603	127.73	14	4	Median	2.6634	2.2221	94.507	3	1	Median	0.67445	0.79953	173.74	4	2	Median	0.91043	0.89223	126.6	3	0	Plateau	1.008	1.086	118.5	4	1	Median	2587300000	1214600000	1372700000	688430000	284110000	404320000	985800000	459380000	526420000	248350000	125930000	122420000	664670000	345130000	319530000	47392	779	44604	286029;286030;286031;286032;286033;286034;286035;286036;286037;286038;286039;286040;286041;286042;286043;286044	383550;383551;383552;383553;383554;383555;383556;383557;383558;383559;383560;383561;383562;383563;383564;383565;383566;383567;383568;383569;383570;383571	383560			22	
SQESDGVEYIFISK	1	Unmodified	1600.7621	0.76206772	2942	Q5T2T1	MPP7	MAGUK p55 subfamily member 7	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	70.722	70.127	2	8.6781E-10	63901	160511_QHF_FH_JSI12i_1	105.65	89.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47393	2942	44605	286045	383572	383572			1	
SQESGYYDR	0	Unmodified	1103.452	0.45196697	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	3	1	11.121	8.3742	2	2.82E-05	7224	160511_QHF_FH_JSI9i_1	103.26	46.078			0.87506	0.85558	10.903	6	0	Median	0.9875	0.79789	NaN	1	0	Median	0.73384	0.86147	NaN	1	0	Median	0.88915	0.87532	14.604	3	0	Median	0.81248	0.84973	NaN	1	0	Median	914490000	506030000	408460000	232730000	119310000	113420000	235210000	148510000	86702000	207930000	111000000	96923000	238620000	127200000	111420000	47394	1556	44606	286046;286047;286048;286049;286050;286051	383573;383574;383575;383576;383577;383578;383579;383580;383581	383581			9	
SQETECTYFSTPLLLGK	1	Unmodified	1972.9452	0.94519382	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								3	3	3	3	85.784	85.278	2;3	2.2803E-40	77331	160511_QHF_FH_JSI10i_1	242.79	226.65			0.95232	0.97084	35.769	11	6	Median	0.94193	0.78354	20.06	3	3	Plateau	0.87229	1.0369	4.2904	2	0	Median	0.81264	0.80409	48.181	3	1	Median	1.2076	1.2942	7.8193	3	2	Median	1263400000	628900000	634530000	191010000	94889000	96126000	277930000	145180000	132740000	336130000	178510000	157620000	458360000	210320000	248040000	47395	1504	44607	286052;286053;286054;286055;286056;286057;286058;286059;286060;286061;286062;286063	383582;383583;383584;383585;383586;383587;383588;383589;383590;383591;383592;383593;383594;383595;383596;383597;383598;383599;383600;383601;383602;383603;383604;383605	383598			24	
SQETECTYFSTPLLLGKK	2	Unmodified	2101.0402	0.04015684	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	72.754	72.607	3	3.3625E-05	62923	160511_QHF_FH_JSI12i_3	88.565	83.235			1.0507	1.0284	29.156	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89105	0.83679	NaN	1	1	Median	1.2389	1.2638	NaN	1	1	Median	109360000	53701000	55664000	0	0	0	0	0	0	45794000	23264000	22530000	63571000	30437000	33134000	47396	1504	44608	286064;286065	383606;383607;383608	383607			3	
SQETGDLDVGGLQETDK	1	Unmodified	1790.817	0.81701642	1219	P23142	FBLN1	Fibulin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	46.308	45.631	2	2.4109E-32	40568	160511_QHF_FH_JSI9i_1	146	120.06			0.87713	0.86176	16.028	4	2	Median	1.0858	0.88604	NaN	1	1	Median	0.73718	0.83814	NaN	1	1	Median	1.0437	1.0026	NaN	1	0	Median	0.67082	0.68268	NaN	1	0	Median	103870000	57048000	46827000	17520000	6706200	10814000	24557000	16498000	8058400	36195000	16821000	19375000	25602000	17022000	8580100	47397	1219	44609	286066;286067;286068;286069;286070;286071	383609;383610;383611;383612;383613;383614;383615	383615			7	
SQETPATK	1	Unmodified	860.42396	0.42396131	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.46	3		2		2	3				2	3	3	2	5.1631	1.3527	2	0.00064102	2585	160511_QHF_FH_JSI11i_1	101.54	20.245			0.95209	0.91336	10.079	10	1	Median	1.0961	0.90554	2.4612	2	0	Median	0.77816	0.9041	6.089	3	1	Plateau	1.1745	1.1305	9.1309	3	0	Plateau	0.86753	0.93422	4.4386	2	0	Median	2653000000	1330000000	1323000000	571120000	272270000	298850000	1073800000	576940000	496880000	981520000	466420000	515100000	26540000	14322000	12218000	47398	920	44610	286072;286073;286074;286075;286076;286077;286078;286079;286080;286081	383616;383617;383618;383619;383620;383621;383622;383623;383624;383625	383616			10	
SQETPATKK	2	Unmodified	988.51892	0.51892433	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	1	3	2	4.6821	2.2793	2	9.0662E-05	2149	160511_QHF_FH_JSI11i_2	94.692	43.346			1.0831	1.1517	31.407	7	0	Median	1.5398	1.2934	NaN	1	0	Median	0.49697	0.60562	NaN	1	0	Median	1.5522	1.5241	22.516	3	0	Plateau	1.0205	1.107	5.601	2	0	Median	371670000	171220000	200450000	67565000	26389000	41175000	54091000	30569000	23521000	168810000	72784000	96026000	81207000	41481000	39726000	47399	920	44611	286082;286083;286084;286085;286086;286087;286088	383626;383627;383628	383627			3	
SQETPEKPR	1	Acetyl (K)	1112.5462	0.54620171	3026	Q68DK7	MSL1	Male-specific lethal 1 homolog	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	19.757	12.549	2	0.0050342	8184	160513_QHF_FH_JSI10Kac_3	73.985	63.998			1.4867	1.6745	8.0553	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3358	1.5817	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6547	1.7726	NaN	1	0	Median	10295000	4327800	5967500	0	0	0	4099200	1757900	2341400	0	0	0	6196100	2569900	3626100	47400	3026	44612	286089;286090	383629;383630	383630	2743		2	
SQEVAYTDIK	1	Unmodified	1152.5663	0.56626845	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		38.784	29.755	2	0.0059055	17223	160513_QHF_FH_JSI11Kac_3	63.283	36.168			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47401	1688	44613	286091	383631	383631			1	
SQFEAQK	1	Unmodified	836.40283	0.40283194	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.03	3	2				2	2			1	3	3	2	9.5663	5.601	2	0.0030281	4349	160513_QHF_FH_JSI11Kac_4	101.54	44.261			0.96259	0.97051	15.039	6	1	Median	1.3625	1.1596	NaN	1	0	Median	1.0699	1.2666	NaN	1	0	Median	0.96259	0.93942	7.5031	2	1	Median	0.835	0.90839	6.4557	2	0	Median	1646900000	836480000	810370000	82599000	36005000	46594000	9384200	4764600	4619500	50796000	27105000	23691000	1504100000	768610000	735470000	47402	576	44614	286092;286093;286094;286095;286096;286097;286098;286099;286100	383632;383633;383634;383635;383636;383637;383638;383639;383640;383641	383639			10	
SQFEAQKIWYEHR	1	Acetyl (K)	1762.8427	0.84271808	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By matching		16	0									2		1	1		65.237	56.287	3	0.058224	30987	160513_QHF_FH_JSI10Kac_6	33.796	20.383			0.78043	0.84866	95.064	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3866	1.6621	NaN	1	0	Median	0.43926	0.43331	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46872000	28022000	18850000	0	0	0	22339000	11727000	10611000	24533000	16294000	8238800	0	0	0	47403	576	44615	286101;286102	383642	383642			0	
SQFEKFVR	1	Acetyl (K)	1081.5556	0.55564418	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		56.83	45.984	2	0.0047034	25286	160513_QHF_FH_JSI11Kac_5	87.476	58.1			0.35171	0.33835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35171	0.33835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6373200	4665800	1707400	0	0	0	0	0	0	6373200	4665800	1707400	0	0	0	47404	3176	44616	286103	383643	383643	2789		1	
SQFFITFR	0	Unmodified	1044.5393	0.53926584	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.081	70.831	2	0.00069669	38745	160513_QHF_FH_JSI10Kac_6	107.69	84.265			1.0042	1.1941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0042	1.1941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	160490000	85026000	75460000	0	0	0	160490000	85026000	75460000	0	0	0	0	0	0	47405	2392	44617	286104	383644;383645	383644			2	
SQFLKHVEEFSPR	1	Acetyl (K)	1644.826	0.82600539	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.619	60.105	3	0.0054176	32601	160513_QHF_FH_JSI11Kac_6	57.288	49.112			0.078904	0.075267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.078904	0.075267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18315000	16857000	1458100	0	0	0	0	0	0	18315000	16857000	1458100	0	0	0	47406	2545	44618	286105	383646	383646	2531		1	
SQFLKYIEK	2	Acetyl (K)	1196.6441	0.64412484	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.991	63.608	2	0.00010341	34473	160513_QHF_FH_JSI11Kac_6	117.67	91.734			0.4663	0.45674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4663	0.45674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20871000	15053000	5818300	0	0	0	0	0	0	20871000	15053000	5818300	0	0	0	47407	1674	44619	286106	383647	383647	1698		1	
SQFSDKPVQDR	1	Unmodified	1305.6313	0.63132832	4504	Q9BWS9	CHID1	Chitinase domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		12.798	12.798	2	0.0014321	10257	160511_QHF_FH_JSI11i_3	83.862	49.33			1.1681	1.1175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1681	1.1175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18878000	10745000	8132300	0	0	0	0	0	0	18878000	10745000	8132300	0	0	0	47408	4504	44620	286107	383648	383648			1	
SQFTITPGSEQIR	0	Unmodified	1462.7416	0.74160705	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.54	4	3					3	3		2	4	4	3	53.48	49.061	2	3.5371E-41	43399	160511_QHF_FH_JSI10i_2	207.29	160.83			0.72127	0.80484	43.293	11	7	Median	1.0958	0.90003	NaN	1	0	Median	0.67116	0.80255	58.432	4	3	Median	0.77043	0.75939	47.329	4	3	Median	0.67024	0.73791	28.186	2	1	Median	1541900000	829070000	712800000	108540000	34923000	73621000	581760000	345340000	236420000	564360000	292830000	271530000	287190000	155970000	131230000	47409	4315	44621	286108;286109;286110;286111;286112;286113;286114;286115;286116;286117;286118;286119;286120	383649;383650;383651;383652;383653;383654;383655;383656;383657;383658;383659;383660;383661;383662	383662			14	
SQGAALDK	1	Unmodified	788.40283	0.40283194	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.57	5	1			2	2				2	3	3	2	7.3106	3.8512	2	0.000282	4489	160511_QHF_FH_JSI12i_1	113.62	40.362			0.90233	1.0374	22.678	9	2	Median	1.6862	1.4129	NaN	1	1	Median	0.89244	1.067	7.4376	3	0	Median	1.0704	1.0412	7.484	3	0	Plateau	0.68224	0.7419	30.384	2	1	Median	12088000000	6506200000	5581500000	2943200000	1387400000	1555800000	3087900000	1754300000	1333600000	2936400000	1587700000	1348700000	3120200000	1776800000	1343400000	47410	1503	44622	286121;286122;286123;286124;286125;286126;286127;286128;286129;286130	383663;383664;383665;383666;383667;383668;383669;383670;383671;383672;383673	383667			11	
SQGAALDKYAK	2	Acetyl (K)	1192.6088	0.60880197	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	0.737					2	4	3			1	3	3	2	36.303	26.218	2	1.1027E-11	16752	160513_QHF_FH_JSI10Kac_4	145.55	106.53			0.79219	0.86471	61.764	9	2	Median	0.35022	0.28662	NaN	1	1	Median	0.98934	1.1888	6.2587	3	0	Median	0.45716	0.4529	36.834	3	0	Median	0.85998	0.93583	11.178	2	1	Median	299530000	187590000	111940000	77857000	54535000	23322000	68594000	34924000	33670000	91004000	59969000	31035000	62079000	38165000	23915000	47411	1503	44623	286131;286132;286133;286134;286135;286136;286137;286138;286139	383674;383675;383676;383677;383678;383679;383680;383681;383682;383683;383684;383685	383675	1525		12	
SQGCSEQVLTVLK	1	Unmodified	1447.7341	0.73407884	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	53.698	53.062	2	1.5584E-10	47061	160511_QHF_FH_JSI9i_1	150.69	107.18			0.91604	0.89884	17.34	4	0	Median	1.1364	0.93061	NaN	1	0	Median	0.73065	0.86816	NaN	1	0	Median	0.77643	0.76445	NaN	1	0	Median	1.0807	1.1567	NaN	1	0	Median	812140000	408870000	403260000	105970000	50569000	55402000	178890000	97712000	81181000	252600000	135690000	116910000	274670000	124900000	149770000	47412	2094	44624	286140;286141;286142;286143;286144	383686;383687;383688;383689;383690;383691;383692;383693;383694	383692			9	
SQGDMQDLNGNNQSVTR	0	Unmodified	1862.8177	0.8177019	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	25.082	24.523	2	2.6601E-24	21111	160511_QHF_FH_JSI9i_1	183.41	172.2			1.149	1.0477	30.413	4	0	Median	1.0097	0.85826	NaN	1	0	Median	0.71365	0.85072	NaN	1	0	Median	1.3076	1.2789	NaN	1	0	Median	1.5275	1.5713	NaN	1	0	Median	179510000	91150000	88358000	29066000	12765000	16301000	44507000	26330000	18177000	41019000	20861000	20159000	64916000	31195000	33721000	47413	1500	44625	286145;286146;286147;286148;286149	383695;383696;383697;383698;383699;383700;383701;383702	383702			8	
SQGDSNPAAIPHAAEDIQGDDR	0	Acetyl (Protein N-term)	2305.0207	0.02069504	2077	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	50.754	50.077	2	8.0755E-40	45316	160511_QHF_FH_JSI11i_1	225.13	199.41			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47414	2077	44626	286150;286151;286152;286153;286154	383703;383704;383705;383706;383707	383703			5	
SQGFPDTYR	0	Unmodified	1069.4829	0.48287317	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1			2	2	2	1	29.328	27.207	2	0.00094172	24387	160511_QHF_FH_JSI12i_1	81.95	65.748			1.2038	1.2059	14.698	6	2	Median	1.5541	1.3273	8.4541	2	1	Median	0.81335	0.9453	NaN	1	1	Median	1.1364	1.0965	8.3326	2	0	Median	1.2096	1.2807	NaN	1	0	Median	258870000	113860000	145010000	77910000	29438000	48472000	69473000	36789000	32684000	61383000	22996000	38388000	50104000	24636000	25468000	47415	1273	44627	286155;286156;286157;286158;286159;286160;286161	383708;383709;383710;383711;383712;383713;383714;383715	383709			8	
SQGGEEEGPLSDK	1	Unmodified	1331.5841	0.58410336	4618	Q9H063	MAF1	Repressor of RNA polymerase III transcription MAF1 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	4									2			2	18.086	16.987	2	3.5787E-12	14148	160511_QHF_FH_JSI9i_1	117.23	96.331			0.77215	0.64393	NaN	1	1	Median	0.77215	0.64393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38135000	23730000	14405000	38135000	23730000	14405000	0	0	0	0	0	0	0	0	0	47416	4618	44628	286162;286163;286164;286165	383716;383717;383718;383719	383719			4	
SQGGVQPIPSQGGK	1	Unmodified	1338.6892	0.68917755	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	19.705	19.073	2	9.2787E-07	16310	160511_QHF_FH_JSI10i_1	136.27	107.22			0.81001	0.9459	13.487	3	0	Median	1.1972	0.9962	NaN	1	0	Median	0.81001	0.9459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75022	0.77185	NaN	1	0	Median	246480000	132970000	113510000	77406000	37254000	40152000	97373000	53870000	43503000	0	0	0	71703000	41847000	29857000	47417	5147	44629	286166;286167;286168	383720;383721	383720			2	
SQGKPIELTPLPLLK	2	Unmodified	1632.9814	0.98144339	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.317	78.317	3	1.0689E-05	69950	160511_QHF_FH_JSI11i_3	82.663	77.397			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47418	2735	44630	286169	383722	383722			1	
SQGLSQLYHNQSQGLLSQLQGQSK	1	Unmodified	2628.3256	0.32559125	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			72.549	71.415	3	4.9644E-24	59798	160511_QHF_FH_JSI10i_3	142.42	138.96			0.82062	0.80051	8.209	4	0	Median	0.92264	0.77064	1.2153	2	0	Median	0.71915	0.86918	7.4771	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	252660000	139850000	112810000	152040000	82320000	69725000	100610000	57532000	43082000	0	0	0	0	0	0	47419	2084	44631	286170;286171;286172;286173	383723;383724;383725;383726;383727;383728;383729;383730;383731;383732	383724			10	
SQGMALSLGDK	1	Unmodified	1105.5438	0.54375887	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	41.295	40.425	2	6.3326E-05	35629	160511_QHF_FH_JSI10i_2	101.93	65.533			1.0777	1.2756	46.362	7	4	Median	1.5173	1.2764	45.824	2	1	Median	1.2772	1.5523	27.762	2	1	Median	0.66072	0.66714	NaN	1	1	Median	0.97143	1.057	70.105	2	1	Median	1074200000	484790000	589460000	229830000	96186000	133640000	355020000	144700000	210320000	113770000	70407000	43361000	375630000	173490000	202140000	47420	1804	44632	286174;286175;286176;286177;286178;286179;286180;286181	383733;383734;383735;383736;383737;383738;383739;383740;383741;383742	383742			10	
SQGMASLNLPAVSWK	1	Unmodified	1587.8079	0.80791248	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	3	1	82.983	82.489	2	3.8772E-40	72533	160511_QHF_FH_JSI11i_2	206.32	170.66			0.79172	0.87297	10.33	7	2	Median	1.0308	0.87297	NaN	1	0	Median	0.72797	0.85373	8.2258	2	1	Median	0.87181	0.88412	16.622	3	0	Median	0.79172	0.84959	NaN	1	1	Median	499050000	254330000	244720000	94849000	42263000	52586000	99228000	54860000	44368000	222440000	111710000	110730000	82537000	45502000	37035000	47421	1421	44633	286182;286183;286184;286185;286186;286187;286188	383743;383744;383745;383746;383747;383748;383749;383750;383751	383749			9	
SQGPSLDLSALK	1	Unmodified	1214.6507	0.65066678	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.008	62.362	2	0.005337	56764	160511_QHF_FH_JSI12i_1	54.486	15.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47422	697	44634	286189	383752	383752			1	
SQGQDVTSSVYFMK	1	Unmodified	1575.7239	0.72390808	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	58.589	55.854	2	9.7098E-10	50612	160511_QHF_FH_JSI11i_1	146.36	127.11			1.1259	1.176	2.1813	5	0	Median	1.4099	1.176	NaN	1	0	Median	0.9945	1.1878	NaN	1	0	Median	1.1432	1.1422	1.0311	2	0	Median	1.1259	1.1936	NaN	1	0	Median	889270000	447010000	442260000	211170000	100160000	111010000	225130000	120450000	104680000	244780000	117890000	126890000	208200000	108520000	99679000	47423	1076	44635	286190;286191;286192;286193;286194	383753;383754;383755;383756;383757;383758;383759;383760;383761;383762	383754			10	
SQGSGNEAEPLGK	1	Unmodified	1272.5946	0.59460847	5012	Q9NUQ6	SPATS2L	SPATS2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.043	12.62	2	3.6975E-11	10262	160511_QHF_FH_JSI10i_1	154.28	130.85			1.1011	1.0588	8.2497	4	0	Median	1.1785	0.98421	NaN	1	0	Median	0.93558	1.1039	NaN	1	0	Median	1.0659	1.0155	NaN	1	0	Median	1.1375	1.181	NaN	1	0	Median	211980000	105390000	106590000	63453000	31832000	31622000	56040000	25724000	30316000	39327000	19214000	20113000	53159000	28618000	24541000	47424	5012	44636	286195;286196;286197;286198	383763;383764;383765;383766;383767;383768;383769	383767			7	
SQGSQAELHPLPQLK	1	Unmodified	1631.8631	0.86311917	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		43.429	42.711	3	0.0024843	37553	160511_QHF_FH_JSI10i_2	46.701	35.847			0.86716	0.802	25.843	4	1	Median	0.76583	0.68537	NaN	1	0	Median	0.55228	0.66729	NaN	1	0	Median	1.0615	1.0348	13.813	2	1	Median	NaN	NaN	NaN	0	0	Median	229780000	127090000	102690000	48144000	31182000	16962000	73530000	52996000	20533000	108110000	42915000	65191000	0	0	0	47425	2640	44637	286199;286200;286201;286202	383770;383771;383772	383772			3	
SQGYDWSEPFSPGEDEFK	1	Unmodified	2103.8698	0.86978027	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		78.486	78.03	2	1.8954E-11	70939	160511_QHF_FH_JSI11i_1	147.1	125.54			0.7461	0.88846	9.2168	3	1	Plateau	1.2801	1.0291	NaN	1	1	Median	0.7461	0.88846	NaN	1	0	Median	0.9019	0.86833	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69101000	41172000	27929000	12162000	3971500	8190600	36968000	24877000	12091000	19970000	12323000	7646900	0	0	0	47426	3308	44638	286203;286204;286205;286206	383773;383774;383775;383776	383773			4	
SQHDILQMICSK	1	Unmodified	1458.6959	0.69591919	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	59.126	58.865	2	0.0001912	50714	160511_QHF_FH_JSI12i_3	80.245	66.01			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47427	1576	44639	286207;286208	383777;383778	383778			2	
SQHEELKK	2	Acetyl (K)	1039.5298	0.52982336	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		9.2545	1.6392	2	0.035899	3664	160513_QHF_FH_JSI11Kac_4	63.565	39.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1604700	1604700	0	0	0	0	0	0	0	1604700	1604700	0	0	0	0	47428	138	44640	286209	383779	383779			1	
SQHEELKK	2	Unmodified	997.51926	0.51925868	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	0.059914	0.14327	2	0.0081672	55	160511_QHF_FH_JSI12i_3	67.032	34.562			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47429	138	44640	286210	383780	383780			1	
SQHINTLGQFWTTK	1	Unmodified	1659.8369	0.83690442	582	O75911	DHRS3	Short-chain dehydrogenase/reductase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		58.577	57.556	3	1.2405E-05	48363	160511_QHF_FH_JSI10i_3	78.069	58.746			0.96303	1.1084	16.914	3	1	Median	1.5856	1.2822	NaN	1	0	Median	0.95733	1.1084	NaN	1	1	Median	0.96303	0.91514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	256110000	118660000	137460000	57329000	22746000	34583000	69364000	35590000	33774000	129420000	60321000	69100000	0	0	0	47430	582	44641	286211;286212;286213;286214	383781;383782;383783;383784;383785	383783			5	
SQHKYVIGPK	2	Acetyl (K)	1197.6506	0.6506072	2147	Q00341	HDLBP	Vigilin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.438	22.156	3	0.007531	12743	160513_QHF_FH_JSI11Kac_6	44.564	28.674			0.40465	0.39489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40465	0.39489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12149000	7793100	4355500	0	0	0	0	0	0	12149000	7793100	4355500	0	0	0	47431	2147	44642	286215	383786;383787	383787	2254		2	
SQHLGEELQGFWDK	1	Unmodified	1672.7845	0.7845345	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.111	66.814	3	0.0034286	57784	160511_QHF_FH_JSI12i_3	45.614	26.036			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47432	292	44643	286216	383788	383788			1	
SQHSGNAQVTQTK	1	Unmodified	1384.6695	0.66950474	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.35	5	9	5				4	7	2	6	5	10	11	4.9317	0.76861	2;3	9.1627E-135	2354	160511_QHF_FH_JSI11i_3	283.95	253.69			0.88785	0.96341	13.781	28	2	Median	1.2454	1.0765	19.643	5	0	Median	0.81496	0.96319	7.0904	5	0	Median	0.90148	0.90441	14.979	10	2	Median	0.87144	0.96751	11.72	8	0	Median	4630600000	2560500000	2070100000	752620000	398080000	354540000	1013400000	570010000	443400000	2228000000	1269800000	958170000	636560000	322600000	313960000	47433	3828	44644	286217;286218;286219;286220;286221;286222;286223;286224;286225;286226;286227;286228;286229;286230;286231;286232;286233;286234;286235;286236;286237;286238;286239;286240;286241;286242;286243;286244;286245;286246;286247;286248	383789;383790;383791;383792;383793;383794;383795;383796;383797;383798;383799;383800;383801;383802;383803;383804;383805;383806;383807;383808;383809;383810;383811;383812;383813;383814;383815;383816;383817;383818;383819;383820;383821;383822;383823;383824;383825;383826;383827;383828;383829	383791			41	
SQHSGNAQVTQTKFLPNAPK	2	Acetyl (K)	2194.1131	0.11307928	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.471								4	2	1	1	2	2	55.035	44.679	3	0.00011465	24036	160513_QHF_FH_JSI11Kac_6	68.567	59.037			0.77885	0.86172	36.27	6	0	Median	1.2278	1.0434	NaN	1	0	Median	0.84698	1.0256	NaN	1	0	Median	0.48986	0.48089	13.073	2	0	Median	0.77885	0.86172	1.6693	2	0	Median	40033000	22485000	17548000	3826600	1612300	2214300	7118300	3364000	3754300	16886000	11084000	5802500	12202000	6425000	5776700	47434	3828	44645	286249;286250;286251;286252;286253;286254	383830;383831;383832;383833;383834;383835;383836;383837;383838	383831	2954		9	
SQHYDLVLNGNEIGGGSIR	0	Unmodified	2028.0025	0.0024662011	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	60.364	59.837	3	0.00092392	51476	160511_QHF_FH_JSI12i_3	50.377	40.628			1.1349	1.2213	16.277	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1349	1.0243	NaN	1	0	Median	1.243	1.3159	10.555	2	2	Median	125590000	42542000	83046000	0	0	0	0	0	0	47519000	20145000	27374000	78069000	22397000	55672000	47435	3119	44646	286255;286256;286257	383839;383840;383841	383841			3	
SQICDNAALYAQK	1	Unmodified	1480.698	0.69802768	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.398	36.781	2	3.9394E-22	32580	160511_QHF_FH_JSI9i_1	160.15	116.64			0.97295	0.92772	15.845	3	1	Plateau	0.84727	0.70579	NaN	1	0	Median	0.80128	0.92772	NaN	1	1	Median	0.97295	0.92961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	317230000	152730000	164490000	63296000	28206000	35090000	98371000	47645000	50726000	155560000	76884000	78676000	0	0	0	47436	1844	44647	286258;286259;286260	383842;383843;383844;383845;383846	383846			4	
SQIDVALSQDSTYQGER	0	Unmodified	1895.8861	0.88609904	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		49.529	48.845	2	2.7015E-11	44251	160511_QHF_FH_JSI11i_1	175.15	152.95			1.2525	1.2149	14.317	3	2	Median	1.6229	1.3117	NaN	1	1	Median	0.85308	0.99411	NaN	1	0	Median	1.2525	1.2149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	196940000	101230000	95709000	49884000	21866000	28018000	87346000	51983000	35362000	59706000	27377000	32329000	0	0	0	47437	3904	44648	286261;286262;286263	383847;383848;383849;383850	383847			4	
SQIEQLK	1	Unmodified	844.46543	0.46543219	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1	0	3									1		1	1	16.739	16.192	2	0.01035	13394	160511_QHF_FH_JSI9i_1	75.213	30.131			0.75909	0.77433	7.2824	3	0	Plateau	1.0767	0.87774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79077	0.78219	NaN	1	0	Median	0.73015	0.7671	NaN	1	0	Median	643220000	331910000	311310000	183700000	89986000	93717000	0	0	0	229630000	128190000	101440000	229890000	113730000	116160000	47438	3328	44649	286264;286265;286266	383851	383851			1	
SQIFSTASDNQPTVTIK	1	Unmodified	1835.9265	0.92650729	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	5.96	8	8	5			4	7	3		8	8	9	10	61.939	57.434	2;3	1.299E-236	51947	160511_QHF_FH_JSI10i_1	419.46	387.87			1.0526	1.0102	19.991	34	2	Median	1.0962	0.89932	12.13	8	1	Median	0.79378	0.96256	22.149	8	0	Median	1.0666	1.0378	10.987	8	0	Median	1.073	1.1342	21.366	10	1	Median	15354000000	7307900000	8046200000	3440700000	1613400000	1827300000	3706300000	2002500000	1703800000	4600200000	1997600000	2602700000	3606900000	1694500000	1912500000	47439	982	44650	286267;286268;286269;286270;286271;286272;286273;286274;286275;286276;286277;286278;286279;286280;286281;286282;286283;286284;286285;286286;286287;286288;286289;286290;286291;286292;286293;286294;286295;286296;286297;286298;286299;286300;286301	383852;383853;383854;383855;383856;383857;383858;383859;383860;383861;383862;383863;383864;383865;383866;383867;383868;383869;383870;383871;383872;383873;383874;383875;383876;383877;383878;383879;383880;383881;383882;383883;383884;383885;383886;383887;383888;383889;383890;383891;383892;383893;383894;383895;383896;383897;383898;383899;383900;383901;383902;383903;383904;383905;383906;383907;383908;383909;383910;383911;383912;383913;383914;383915;383916;383917;383918;383919;383920;383921;383922;383923;383924;383925;383926;383927;383928;383929;383930;383931;383932;383933;383934;383935;383936	383889			84	
SQIHDIVLVGGSTR	0	Unmodified	1480.7998	0.79979063	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.41		8	10				1	10	7	10	7	9	10	49.897	44.401	2;3	7.0614E-52	38744	160511_QHF_FH_JSI11i_3	263.83	209.42			1.0218	1.0202	18.109	36	5	Median	1.2402	1.0216	21.463	10	0	Median	0.84941	1.0156	13.136	7	0	Median	1.0163	1.0248	12.891	9	2	Median	0.92858	0.97698	20.796	10	3	Median	38810000000	19076000000	19734000000	4239800000	1900700000	2339100000	5322100000	2946200000	2375900000	15374000000	7089200000	8284900000	13874000000	7139900000	6733800000	47440	985	44651	286302;286303;286304;286305;286306;286307;286308;286309;286310;286311;286312;286313;286314;286315;286316;286317;286318;286319;286320;286321;286322;286323;286324;286325;286326;286327;286328;286329;286330;286331;286332;286333;286334;286335;286336;286337	383937;383938;383939;383940;383941;383942;383943;383944;383945;383946;383947;383948;383949;383950;383951;383952;383953;383954;383955;383956;383957;383958;383959;383960;383961;383962;383963;383964;383965;383966;383967;383968;383969;383970;383971;383972;383973;383974;383975;383976;383977;383978;383979;383980;383981;383982;383983;383984;383985;383986;383987;383988;383989;383990;383991;383992;383993;383994;383995;383996;383997;383998;383999;384000;384001;384002;384003;384004;384005;384006;384007;384008;384009;384010;384011	383938			74	
SQIHDIVLVGGSTRIPK	1	Unmodified	1819.0316	0.031581485	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			55.204	53.641	3;4	1.6333E-06	43999	160511_QHF_FH_JSI9i_3	112.8	108.56			2.6398	2.1401	NaN	1	1	Median	2.6398	2.1401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41958000	16609000	25349000	34855000	9505600	25349000	7103100	7103100	0	0	0	0	0	0	0	47441	985	44652	286338;286339;286340	384012;384013;384014	384013			3	
SQILSGTLPQDELK	1	Unmodified	1527.8144	0.81443765	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	13.5	0.5						2	2				2		2	71.513	61.579	2	8.3057E-07	32906	160513_QHF_FH_JSI12Kac_4	107.18	56.084			1.0685	1.191	17.718	4	0	Median	NaN	NaN	NaN	0	0	Median	0.8397	1.0007	14.625	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2244	1.308	3.2444	2	0	Median	27271000	14015000	13256000	0	0	0	15986000	8749400	7236700	0	0	0	11285000	5265900	6019100	47442	2511	44653	286341;286342;286343;286344	384015;384016;384017;384018;384019;384020;384021;384022	384020			8	
SQIPLSK	1	Unmodified	771.44905	0.44905385	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.39	4	4	4			4	2			5	4	4	5	24.386	20.307	2	0.0032652	5830	160513_QHF_FH_JSI9Kac_3	97.798	30.766			1.0898	1.1022	30.098	17	4	Median	1.292	1.0984	46.173	5	3	Median	1.0887	1.2601	12.218	4	1	Median	1.132	1.1498	29.313	4	0	Median	0.74846	0.96274	19.236	4	0	Linear	5298100000	2367700000	2930400000	1319700000	490920000	828790000	1359400000	619850000	739510000	1219700000	609790000	609880000	1399400000	647180000	752180000	47443	1024	44654	286345;286346;286347;286348;286349;286350;286351;286352;286353;286354;286355;286356;286357;286358;286359;286360;286361;286362	384023;384024;384025;384026;384027;384028;384029;384030;384031;384032;384033;384034;384035;384036;384037;384038;384039;384040;384041;384042;384043;384044;384045	384032			23	
SQIPLSKIK	2	Acetyl (K)	1054.6386	0.63864553	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		60.479	49.617	2	0.034249	28221	160513_QHF_FH_JSI11Kac_4	47.198	25.112			0.64245	0.68907	55.77	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86524	1.0222	NaN	1	0	Median	0.47703	0.46451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16620000	10208000	6411100	0	0	0	6884900	3798400	3086500	9734700	6410000	3324700	0	0	0	47444	1024	44655	286363;286364	384046;384047	384047			2	
SQIQEYVDYNGGAGVQHIALK	1	Unmodified	2289.139	0.13895968	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.48	1	8	7						4	4	3	7	6	67.226	64.881	2;3	1.2491E-118	57188	160511_QHF_FH_JSI9i_2	230.97	208.39			0.99878	0.99097	22.638	16	2	Median	1.1685	0.96599	10.521	3	0	Plateau	0.88814	1.0934	8.146	3	0	Plateau	0.96907	0.96314	31.848	6	1	Median	0.92461	1.0029	14.274	4	1	Median	4893400000	2382500000	2510900000	709280000	304860000	404420000	960590000	456520000	504070000	1579400000	790410000	788950000	1644200000	830670000	813490000	47445	1395	44656	286365;286366;286367;286368;286369;286370;286371;286372;286373;286374;286375;286376;286377;286378;286379;286380;286381;286382;286383;286384	384048;384049;384050;384051;384052;384053;384054;384055;384056;384057;384058;384059;384060;384061;384062;384063;384064;384065;384066;384067;384068;384069;384070;384071;384072;384073;384074;384075;384076;384077;384078;384079;384080;384081;384082;384083;384084;384085;384086;384087;384088;384089;384090;384091	384068			42	
SQISTESFLHLR	0	Unmodified	1416.7361	0.73612775	211	O14841	OPLAH	5-oxoprolinase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.975	59.707	3	0.00032923	51412	160511_QHF_FH_JSI12i_3	47.606	29.913			0.34279	0.35107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34279	0.35107	NaN	1	0	Median	186890000	120610000	66272000	0	0	0	0	0	0	0	0	0	186890000	120610000	66272000	47446	211	44657	286385	384092;384093	384093			2	
SQIVIAAWYR	0	Unmodified	1205.6557	0.65569258	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	75.852	67.214	2	2.7545E-07	36469	160513_QHF_FH_JSI11Kac_6	112.71	85.596			1.1067	1.0802	4.0472	5	2	Median	1.3197	1.111	NaN	1	0	Median	0.8998	1.0802	NaN	1	0	Median	1.1272	1.1061	3.5085	2	2	Median	0.95202	1.0185	NaN	1	0	Median	225010000	107750000	117260000	31689000	10590000	21098000	95411000	50955000	44456000	69850000	30817000	39033000	28060000	15386000	12674000	47447	376	44658	286386;286387;286388;286389;286390	384094;384095;384096;384097;384098;384099;384100	384094			7	
SQIVTNVR	0	Unmodified	915.51378	0.51377937	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6	5.66		4					2			1	2	2	1	18.755	16.645	2	0.0070881	13933	160511_QHF_FH_JSI9i_2	60.59	33.988			0.93338	1.0523	43.948	5	0	Median	1.4108	1.2236	NaN	1	0	Median	0.85991	1.0523	NaN	1	0	Median	0.62387	0.61935	58.823	2	0	Median	0.97095	1.0727	NaN	1	0	Median	210250000	109040000	101210000	33980000	14711000	19269000	45141000	20847000	24294000	85079000	46892000	38186000	46048000	26586000	19462000	47448	723	44659	286391;286392;286393;286394;286395;286396	384101;384102;384103;384104	384104			4	
SQKDQNTFQK	2	Acetyl (K)	1264.6048	0.60477922	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		20.551	13.12	2	0.0141	8916	160513_QHF_FH_JSI11Kac_3	56.563	29.448			0.94474	1.015	59.14	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3024	1.542	NaN	1	0	Median	0.68529	0.6681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6002000	3145900	2856100	0	0	0	3104600	1302700	1801900	2897500	1843200	1054300	0	0	0	47449	3955	44660	286397;286398	384105	384105	3009		1	
SQKEEDEQEDLTK	2	Unmodified	1577.7057	0.70567506	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.174	10.925	2	0.00054416	8705	160511_QHF_FH_JSI10i_1	171.57	153.71			0.59054	0.60042	38.822	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0003	1.1229	NaN	1	1	Median	0.57127	0.55166	NaN	1	1	Median	0.59054	0.60042	NaN	1	1	Median	87082000	47235000	39847000	0	0	0	33385000	15542000	17843000	35304000	20145000	15159000	18394000	11549000	6845000	47450	3907	44661	286399;286400;286401	384106;384107;384108	384108			3	
SQKPVMVK	2	Unmodified	915.52117	0.52117293	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.92		7	9						3	5	5	4	5	9.3862	8.011	2;3	0.0025982	6488	160511_QHF_FH_JSI10i_2	57.96	42.298			0.91176	0.89792	47.544	19	3	Median	1.5798	1.241	19.989	5	0	Median	0.85601	1.004	17.154	5	0	Median	0.89719	0.87229	6.4479	4	0	Median	0.81536	0.89033	91.472	5	3	Median	26000000000	14250000000	11750000000	2796800000	863700000	1933100000	4951100000	2480800000	2470200000	5998700000	3249900000	2748700000	12253000000	7655500000	4598000000	47451	1592	44662	286402;286403;286404;286405;286406;286407;286408;286409;286410;286411;286412;286413;286414;286415;286416;286417;286418;286419;286420	384109;384110;384111;384112;384113;384114;384115;384116;384117;384118;384119;384120;384121;384122;384123;384124;384125;384126;384127;384128;384129;384130	384125			22	
SQKPVMVK	2	Acetyl (K);Oxidation (M)	973.52665	0.52665224	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	24.848	17.43	2	0.0074989	10896	160513_QHF_FH_JSI11Kac_3	67.032	42.034			0.26844	0.26562	83.607	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.97606	1.1402	NaN	1	0	Median	0.26844	0.26562	NaN	1	0	Median	0.24471	0.27039	NaN	1	0	Median	24238000	17484000	6754500	0	0	0	4606100	2138100	2468000	14265000	11085000	3180200	5366800	4260500	1106300	47452	1592	44662	286421;286422;286423	384131;384132;384133	384131	1615	1260	3	
SQKPVMVK	2	Acetyl (K)	957.53174	0.53173762	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	33.417	24.812	2	0.0097007	14786	160513_QHF_FH_JSI11Kac_3	75.109	57.724			0.308	0.33445	93.545	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1346	1.327	NaN	1	0	Median	0.2296	0.22269	NaN	1	0	Median	0.308	0.33445	NaN	1	0	Median	17070000	11915000	5155200	0	0	0	4675400	2455300	2220000	9689000	7431200	2257800	2705700	2028300	677450	47453	1592	44662	286424;286425;286426	384134;384135;384136;384137;384138	384134	1615		5	
SQKPVMVK	2	Oxidation (M)	931.51609	0.51608756	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	5.6793	5.727	2	0.051159	3242	160511_QHF_FH_JSI12i_3	73.665	46.972			0.83397	0.81921	13.337	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80194	0.74549	NaN	1	0	Median	0.86728	0.90022	NaN	1	0	Median	801570000	451970000	349600000	0	0	0	0	0	0	223310000	143450000	79862000	578250000	308510000	269740000	47454	1592	44662	286427;286428	384139	384139		1260	1	
SQLAAAAR	0	Unmodified	786.4348	0.43480077	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.41		4	1				1			1	1	2	2	8.8244	8.4895	2	0.0012584	6436	160511_QHF_FH_JSI10i_2	91.906	37.381			1.0812	1.0946	8.0151	5	0	Median	1.3424	1.1462	NaN	1	0	Median	0.89299	1.0946	NaN	1	0	Median	1.175	1.1869	NaN	1	0	Median	0.97017	1.0051	5.3414	2	0	Median	842740000	406830000	435910000	151030000	64091000	86936000	130860000	64528000	66329000	305480000	149760000	155730000	255370000	128460000	126910000	47455	5616	44663	286429;286430;286431;286432;286433;286434	384140;384141;384142;384143;384144;384145	384145			6	
SQLAVPHPETQDSSTQTDTSHSGITNK	1	Unmodified	2865.3377	0.33767208	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.962	35.817	4	0.00063462	30428	160511_QHF_FH_JSI12i_3	38.925	36.124			52.302	53.507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52.302	53.507	NaN	1	1	Median	395860000	24946000	370910000	0	0	0	0	0	0	0	0	0	395860000	24946000	370910000	47456	4215	44664	286435	384146	384146			1	
SQLDIIIHSLK	1	Unmodified	1265.7343	0.73433683	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.62		8	5						8	5	5	5	6	75.74	71.921	2;3	5.082E-23	64440	160511_QHF_FH_JSI11i_2	171.62	146.69			1.0426	1.0595	17.149	20	0	Median	1.2731	1.0301	24.563	5	0	Median	0.79191	0.97291	10.757	5	0	Median	1.2536	1.1876	13.338	5	0	Median	1.0908	1.074	9.76	5	0	Median	5796500000	3009700000	2786800000	739550000	363790000	375760000	2440900000	1330100000	1110900000	1549900000	733550000	816380000	1066100000	582290000	483820000	47457	1024	44665	286436;286437;286438;286439;286440;286441;286442;286443;286444;286445;286446;286447;286448;286449;286450;286451;286452;286453;286454;286455;286456	384147;384148;384149;384150;384151;384152;384153;384154;384155;384156;384157;384158;384159;384160;384161;384162;384163;384164;384165;384166;384167;384168;384169;384170;384171;384172;384173;384174;384175;384176;384177;384178;384179;384180	384164			34	
SQLDIIIHSLKK	2	Unmodified	1393.8293	0.82929985	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	66.238	66.091	2;4	3.8543E-05	54921	160511_QHF_FH_JSI9i_3	89.548	53.589			0.87337	0.84875	38.937	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69235	0.64448	NaN	1	1	Median	1.1017	1.1178	NaN	1	1	Median	233190000	117030000	116160000	0	0	0	0	0	0	94764000	62052000	32713000	138430000	54980000	83448000	47458	1024	44666	286457;286458;286459	384181;384182;384183	384182			3	
SQLDINNKK	2	Unmodified	1058.572	0.57202253	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	10.652	10.568	2;3	0.00025589	7817	160511_QHF_FH_JSI12i_3	84.213	62.253			1.0312	1.0455	36.67	4	0	Median	NaN	NaN	NaN	0	0	Median	1.455	1.8026	NaN	1	0	Median	0.78151	0.74422	NaN	1	0	Median	1.0312	1.0455	4.0303	2	0	Median	515650000	276060000	239600000	0	0	0	101920000	51676000	50242000	64971000	33913000	31058000	348770000	190470000	158300000	47459	133	44667	286460;286461;286462;286463	384184;384185;384186	384185			3	
SQLDLFDDVGTFASGPPK	1	Unmodified	1892.9156	0.91560825	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	96.106	95.9	2;3	8.1305E-06	87230	160511_QHF_FH_JSI12i_1	102.28	80.079			0.69953	0.71609	38.491	7	5	Median	1.0884	0.9177	NaN	1	0	Median	0.7566	0.88243	29.538	2	2	Median	0.81918	0.79094	45.561	2	2	Median	0.51343	0.50625	43.502	2	1	Median	132210000	74673000	57533000	7039500	3495100	3544400	77480000	42268000	35212000	23668000	11860000	11808000	24018000	17050000	6968700	47460	3555	44668	286464;286465;286466;286467;286468;286469;286470	384187;384188;384189;384190;384191;384192;384193	384189			6	
SQLEAIFLR	0	Unmodified	1075.6026	0.60259438	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	71.199	70.247	2	0.0016754	61465	160511_QHF_FH_JSI11i_2	68.016	33.763			0.86904	0.92983	6.4845	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85951	0.88816	NaN	1	0	Median	0.87868	0.97346	NaN	1	0	Median	55631000	32932000	22700000	0	0	0	0	0	0	35027000	21715000	13312000	20604000	11216000	9387800	47461	3401	44669	286471;286472;286473	384194;384195;384196	384195			3	
SQLEEKENK	2	Acetyl (K)	1145.5564	0.55643205	804	P04080	CSTB	Cystatin-B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	18.353	11.076	2	0.00034799	7566	160513_QHF_FH_JSI10Kac_3	102.61	35.046			0.53651	0.52619	74.986	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0485	1.2382	NaN	1	0	Median	0.53651	0.52619	NaN	1	0	Median	0.25084	0.27781	NaN	1	1	Median	12512000	8068600	4443300	0	0	0	2458300	1292000	1166300	7811400	4768600	3042800	2242300	2008000	234300	47462	804	44670	286474;286475;286476	384197;384198;384199;384200;384201	384200	436		5	
SQLEESISQLR	0	Unmodified	1288.6623	0.6622941	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.818	49.976	2	7.0334E-09	42855	160511_QHF_FH_JSI12i_2	120.09	70.672			1.0658	1.3309	96.916	3	3	Median	0.29953	0.25011	NaN	1	1	Median	1.0658	1.3309	NaN	1	1	Median	1.3094	1.3494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	941740000	448780000	492960000	225660000	166840000	58825000	293510000	104380000	189130000	422560000	177560000	245000000	0	0	0	47463	4451	44671	286477;286478;286479;286480	384202;384203;384204;384205	384202			4	
SQLEGLEESVRDR	0	Unmodified	1516.7481	0.74814899	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		40.715	40.715	3	0.0012372	35811	160511_QHF_FH_JSI11i_3	51.546	31.942			2.0382	1.9091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0382	1.9091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96338000	37281000	59058000	0	0	0	0	0	0	96338000	37281000	59058000	0	0	0	47464	236	44672	286481	384206	384206			1	
SQLETSLK	1	Unmodified	904.48656	0.48656157	338	O43488;Q8NHP1	AKR7A2;AKR7L	Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4	yes	no	0	0	0	0		By MS/MS	By MS/MS		7.5	5.5		1				1					1	1		25.202	20.838	2	0.0049627	17729	160511_QHF_FH_JSI10i_2	65.246	29.366			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47465	338	44673	286482;286483	384207;384208	384208			2	
SQLGAHHTTPVGDGAAGTR	0	Unmodified	1831.8925	0.89252182	2874	Q5BJD5	TMEM41B	Transmembrane protein 41B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.62	0.484		3	5							4	3		1	14.607	13.813	3	1.5276E-05	11524	160511_QHF_FH_JSI9i_2	77.031	63.518			1.0381	1.193	31.405	4	2	Median	1.5526	1.2988	53.583	2	2	Median	0.99769	1.193	3.9308	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150930000	64855000	86072000	69386000	24745000	44641000	81541000	40110000	41431000	0	0	0	0	0	0	47466	2874	44674	286484;286485;286486;286487;286488;286489;286490;286491	384209;384210;384211;384212;384213;384214;384215;384216;384217;384218	384215			10	
SQLIDELADK	1	Unmodified	1130.5819	0.58191851	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.524	56.168	2	0.0072475	48589	160511_QHF_FH_JSI11i_2	53.211	33.214			3.2382	3.5669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2382	3.5669	NaN	1	1	Median	59692000	19782000	39910000	0	0	0	0	0	0	0	0	0	59692000	19782000	39910000	47467	3521	44675	286492;286493	384219;384220	384220			2	
SQLIMQAEAEAASVR	0	Unmodified	1602.8036	0.80355538	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.906	68.011	2	1.5351E-06	60404	160511_QHF_FH_JSI10i_2	127.71	94.306			1.2315	1.2867	20.851	4	2	Median	1.1331	0.96627	NaN	1	1	Median	0.94038	1.151	NaN	1	1	Median	1.4692	1.4385	NaN	1	0	Median	1.3384	1.5176	NaN	1	0	Median	212850000	100610000	112240000	34369000	15922000	18447000	44395000	23389000	21006000	82211000	36123000	46088000	51873000	25174000	26699000	47468	590	44676	286494;286495;286496;286497	384221;384222;384223	384223			3	
SQLIVLLK	1	Unmodified	912.6008	0.60080346	1752	P51798	CLCN7	H(+)/Cl(-) exchange transporter 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.57		4						4	1	2	3	2	2	72.104	66.207	2	0.0049375	58041	160511_QHF_FH_JSI11i_2	67.169	50.205			1.1461	1.17	22.931	9	0	Median	1.396	1.1799	5.5983	2	0	Median	0.81196	0.9743	40.203	3	0	Plateau	1.0745	1.0358	11.772	2	0	Median	1.118	1.224	1.3558	2	0	Median	112790000	62062000	50727000	13916000	5447300	8468900	60800000	36735000	24065000	20892000	10869000	10023000	17181000	9011300	8170100	47469	1752	44677	286498;286499;286500;286501;286502;286503;286504;286505;286506	384224;384225;384226;384227;384228;384229;384230	384225			7	
SQLLAHQFIWNMK	1	Unmodified	1614.8341	0.83406765	1536	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.661	69.254	3	2.2618E-14	38366	160513_QHF_FH_JSI10Kac_6	132.86	103.37			0.62366	1.3305	55.802	4	2	Linear	1.1918	1.0093	NaN	1	0	Median	0.94792	1.1289	NaN	1	0	Median	0.41032	0.40529	NaN	1	1	Median	0.38031	0.40951	NaN	1	1	Median	139590000	74550000	65040000	31260000	15735000	15525000	77516000	35980000	41536000	13149000	8795900	4352800	17666000	14039000	3626300	47470	1536	44678	286507;286508;286509;286510	384231;384232;384233;384234	384234			4	
SQLLGSAHEVQR	0	Unmodified	1323.6895	0.6895119	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	1	2	2	20.78	20.48	2;3	1.3756E-09	17574	160511_QHF_FH_JSI9i_2	116.23	59.67			0.90145	0.91489	27.341	6	1	Median	1.889	1.6346	NaN	1	1	Median	0.90252	1.0859	NaN	1	0	Median	0.94786	0.89232	8.65	2	0	Median	0.82113	0.81772	10.764	2	0	Median	257840000	124670000	133170000	19513000	6512100	13001000	25706000	12219000	13488000	104090000	49065000	55023000	108540000	56877000	51660000	47471	2470	44679	286511;286512;286513;286514;286515;286516;286517	384235;384236;384237;384238;384239;384240;384241;384242;384243	384239			9	
SQLLILDR	0	Unmodified	956.56548	0.56548059	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		8	6		1					1				1	1		60.686	55.082	2	0.0010794	47518	160511_QHF_FH_JSI11i_2	94.309	30.83			1.0005	1.099	13.419	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0234	1.2084	NaN	1	0	Median	0.97808	0.99953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145800000	71779000	74021000	0	0	0	6910000	3988600	2921400	138890000	67790000	71099000	0	0	0	47472	1962	44680	286518;286519	384244;384245;384246	384246			3	
SQLLKFVEK	2	Acetyl (K)	1132.6492	0.64921022	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		75.153	64.562	2	0.018131	32211	160513_QHF_FH_JSI10Kac_5	55.549	24.476			0.58835	0.63421	79.388	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94258	1.1118	NaN	1	0	Median	0.36724	0.36177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7234400	4946000	2288400	0	0	0	1765000	849540	915440	5469400	4096500	1372900	0	0	0	47473	1410	44681	286520;286521	384247;384248;384249	384249	1365		3	
SQLLQYVYNLVPR	0	Unmodified	1591.8722	0.8722273	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	93.793	85.95	2;3	2.3965E-16	47832	160513_QHF_FH_JSI9Kac_6	162.68	128.8			1.1048	1.0783	10.7	5	0	Median	1.424	1.2022	NaN	1	0	Median	0.82844	0.98791	3.1913	2	0	Median	1.1048	1.0783	NaN	1	0	Median	1.1599	1.2358	NaN	1	0	Median	1041900000	527200000	514730000	126690000	50171000	76514000	739350000	397770000	341580000	92719000	40613000	52105000	83170000	38641000	44530000	47474	1409	44682	286522;286523;286524;286525;286526;286527	384250;384251;384252;384253;384254	384251			5	
SQLLSGTLPK	1	Unmodified	1042.6023	0.60226003	3856	Q92608	DOCK2	Dedicator of cytokinesis protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.831						3	3	4		1	3	2	4	54.299	44.087	2	0.00095035	24837	160513_QHF_FH_JSI12Kac_4	85.29	0			0.81594	0.93063	46.693	10	4	Median	0.90948	0.7693	NaN	1	0	Median	0.80456	0.96329	14.212	3	1	Median	0.49539	0.48662	95.448	2	1	Median	0.81594	0.88838	31.739	4	2	Median	219790000	122040000	97752000	7827100	4347700	3479400	63853000	31507000	32347000	51763000	29728000	22035000	96347000	56456000	39891000	47475	3856	44683	286528;286529;286530;286531;286532;286533;286534;286535;286536;286537	384255;384256;384257;384258;384259;384260;384261;384262;384263;384264;384265;384266;384267;384268;384269	384263			15	
SQLLSYIDR	0	Unmodified	1093.5768	0.57677356	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.16	1	4	3					3	1	2	2	5	3	61.601	57.295	2	3.8104E-09	49578	160511_QHF_FH_JSI11i_2	154.56	108.88			0.94203	0.98743	15.445	11	0	Median	1.04	0.88326	15.966	2	0	Median	0.80651	0.95737	19.435	2	0	Median	0.99194	0.95385	20.832	4	0	Median	0.9975	1.0215	9.5589	3	0	Median	1526800000	751190000	775560000	210190000	72416000	137780000	267300000	144250000	123050000	599130000	296370000	302760000	450120000	238150000	211970000	47476	1411	44684	286538;286539;286540;286541;286542;286543;286544;286545;286546;286547;286548;286549	384270;384271;384272;384273;384274;384275;384276;384277;384278;384279;384280;384281;384282;384283;384284;384285	384280			16	
SQLMNLIR	0	Unmodified	973.53789	0.53788563	5682	Q9Y5U9	IER3IP1	Immediate early response 3-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			57.935	56.391	2	0.0014792	46329	160511_QHF_FH_JSI9i_3	88.942	20.521			1.1856	1.1392	11.626	2	1	Median	1.3207	1.0493	NaN	1	0	Median	1.0643	1.2368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84181000	35004000	49177000	51054000	23868000	27186000	33127000	11137000	21991000	0	0	0	0	0	0	47477	5682	44685	286550;286551	384286;384287	384287			2	
SQLNDISSFK	1	Unmodified	1137.5666	0.5666028	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.55	43.328	2	0.0080858	38452	160511_QHF_FH_JSI9i_1	60.342	45.676			1.8138	1.4858	NaN	1	1	Median	1.8138	1.4858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100940000	33920000	67023000	100940000	33920000	67023000	0	0	0	0	0	0	0	0	0	47478	4418	44686	286552	384288	384288			1	
SQLNSQSVEITK	1	Unmodified	1332.6885	0.68850885	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.07	4					4	1			2	2	3	2	33.029	27.168	2	0.00021438	26868	160511_QHF_FH_JSI9i_1	158.3	134.27			1.0883	1.053	14.108	8	5	Median	1.3463	1.053	4.2672	2	2	Median	0.9532	1.1322	30.629	2	1	Median	1.0331	1.0151	14.683	2	1	Median	0.95993	1.0267	8.7778	2	1	Median	979050000	524280000	454770000	268910000	126350000	142560000	277020000	160600000	116410000	203040000	108590000	94445000	230090000	128740000	101350000	47479	446	44687	286553;286554;286555;286556;286557;286558;286559;286560;286561	384289;384290;384291;384292;384293;384294;384295;384296;384297;384298	384295			10	
SQLPAEGDAGAEWAAAVLK	1	Unmodified	1882.9425	0.94249171	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	87.723	87.305	2	1.0672E-08	79494	160511_QHF_FH_JSI11i_1	114.64	91.762			1.2117	1.1922	13.395	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1368	1.0844	NaN	1	1	Median	1.2915	1.3106	NaN	1	1	Median	46793000	14198000	32595000	0	0	0	0	0	0	22231000	6662100	15568000	24562000	7535500	17027000	47480	2557	44688	286562;286563	384299;384300	384299			2	
SQLPDLSGPHSYSPGR	0	Unmodified	1696.8169	0.81689726	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.02	43.783	2	0.0052584	37389	160511_QHF_FH_JSI12i_3	52.928	33.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47481	3376	44689	286564	384301	384301			1	
SQLPTIMDFKK	2	Unmodified	1306.6955	0.69550848	43	CON__ENSEMBL:ENSBTAP00000032840			yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	3	0			3							1		1	1	61.665	61.071	3	1.7084E-05	52558	160511_QHF_FH_JSI12i_3	92.112	84.077		+	0.85033	0.83345	14.297	3	0	Plateau	1.2875	1.0846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92075	0.8654	NaN	1	0	Median	0.83268	0.83229	NaN	1	0	Median	145000000	79504000	65492000	10877000	5642900	5233800	0	0	0	58214000	30897000	27317000	75905000	42964000	32941000	47482	43	44690	286565;286566;286567	384302;384303;384304	384304			3	
SQLPTLEQDGGTQNPVSSPGMSQELR	0	Unmodified	2755.3083	0.30828621	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	6									2	2	2		68.034	67.431	2;3	4.2283E-20	61032	160511_QHF_FH_JSI10i_1	121.3	114.85			1.591	1.3394	9.1909	5	3	Median	1.6331	1.3273	1.2791	2	1	Median	1.2058	1.4023	12.417	2	2	Median	1.591	1.5659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	304580000	136540000	168050000	61034000	26796000	34238000	142550000	68278000	74274000	101000000	41462000	59534000	0	0	0	47483	1598	44691	286568;286569;286570;286571;286572;286573	384305;384306;384307;384308;384309;384310;384311	384309			6	
SQLQALHIGLDSSSIGSGPGDAEADDGFPESR	0	Unmodified	3212.4858	0.48579288	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		80.816	80.816	3	2.5265E-07	72204	160511_QHF_FH_JSI11i_3	60.675	58.362			0.91432	0.85914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91432	0.85914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19610000	14903000	4706200	0	0	0	0	0	0	19610000	14903000	4706200	0	0	0	47484	475	44692	286574	384312	384312			1	
SQLQDTLIHLIK	1	Unmodified	1407.8086	0.80856441	4904	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.6	0.49		2	3							1	2	1	1	82.847	82.302	3	3.2718E-06	71342	160511_QHF_FH_JSI12i_3	101.53	95.499			1.1169	1.0698	15.549	5	1	Median	1.1169	0.96705	NaN	1	0	Median	0.94151	1.1465	27.497	2	1	Median	1.2441	1.1303	NaN	1	0	Median	1.0706	1.0698	NaN	1	0	Median	174860000	100420000	74436000	14145000	7598100	6547000	22462000	10523000	11938000	48694000	25110000	23584000	89559000	57193000	32366000	47485	4904	44693	286575;286576;286577;286578;286579	384313;384314;384315;384316	384316			4	
SQLQISNNR	0	Unmodified	1058.5469	0.54687041	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	5.86		4	2				3	1		2	2	3	3	17.927	14.229	2	5.4408E-06	12243	160511_QHF_FH_JSI11i_3	115.71	30.503			1.0275	1.0636	9.3671	10	0	Median	1.1096	0.92478	2.6678	2	0	Median	0.91501	1.0913	1.7231	2	0	Median	1.0404	1.0602	3.8799	3	0	Median	0.98043	1.0845	14.923	3	0	Median	553930000	274110000	279810000	95478000	44444000	51034000	96101000	55324000	40777000	214860000	103890000	110970000	147480000	70453000	77030000	47486	1085	44694	286580;286581;286582;286583;286584;286585;286586;286587;286588;286589	384317;384318;384319;384320;384321;384322;384323;384324;384325;384326;384327;384328;384329;384330;384331;384332	384317			16	
SQLQQFSHIK	1	Unmodified	1214.6408	0.6407708	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			62.698	62.317	2	0.045535	56383	160511_QHF_FH_JSI10i_1	36.557	7.599			1.9142	2.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9142	2.2717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53326000	21355000	31971000	0	0	0	53326000	21355000	31971000	0	0	0	0	0	0	47487	5466	44695	286590	384333	384333			1	
SQLQQFSHIKK	2	Unmodified	1342.7357	0.73573382	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.988	22.733	3	0.0045475	18706	160511_QHF_FH_JSI10i_3	45.077	30.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47488	5466	44696	286591	384334	384334			1	
SQLSCVVVDDIER	0	Unmodified	1518.7348	0.73480712	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		63.305	62.771	2	4.9911E-05	54647	160511_QHF_FH_JSI11i_2	77.593	53.742			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47489	1586	44697	286592	384335	384335			1	
SQLSPLEAPALLWGLLMAVGAVR	0	Unmodified	2391.3348	0.33482272	4432	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				105.28	96.052	2	0.050017	55488	160513_QHF_FH_JSI9Kac_6	35.659	24.219			1.5224	1.3348	NaN	1	0	Median	1.5224	1.3348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77848000	31757000	46091000	77848000	31757000	46091000	0	0	0	0	0	0	0	0	0	47490	4432	44698	286593	384336	384336			1	
SQLSVFEVVPGTDQVDHAAAVK	1	Unmodified	2296.1699	0.16992546	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.541	77.721	3	6.2882E-06	68488	160511_QHF_FH_JSI9i_2	63.726	55.439			0.76923	0.7473	26.984	4	1	Median	0.9154	0.77361	NaN	1	0	Median	0.4365	0.52663	NaN	1	1	Median	0.98965	1.0155	NaN	1	0	Median	0.64639	0.72188	NaN	1	0	Median	112250000	66679000	45571000	23277000	12730000	10547000	25352000	21179000	4173300	34628000	16513000	18115000	28993000	16257000	12736000	47491	410	44699	286594;286595;286596;286597	384337;384338;384339;384340;384341;384342;384343	384339			7	
SQLVYQSR	0	Unmodified	979.50869	0.50869399	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	16.55	15.861	2	0.0029511	12792	160511_QHF_FH_JSI11i_2	76.221	54.451			0.88584	0.97861	4.0752	4	0	Median	1.2177	1.0157	NaN	1	0	Median	0.83554	1.0128	NaN	1	0	Median	0.92499	0.94478	NaN	1	0	Median	0.84836	0.94553	NaN	1	0	Median	297550000	161170000	136380000	69147000	29916000	39231000	57619000	32358000	25261000	97678000	56046000	41631000	73108000	42848000	30260000	47492	2271	44700	286598;286599;286600;286601	384344;384345	384345			2	
SQLYPEVPPEEFRPFLAK	1	Unmodified	2146.1099	0.10989139	3552	Q8N668	COMMD1	COMM domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	87.692	87.472	3	0.00067815	75977	160511_QHF_FH_JSI12i_3	61.815	37.528			0.58813	0.54749	27.667	3	3	Median	NaN	NaN	NaN	0	0	Median	0.34495	0.42429	NaN	1	1	Median	0.58813	0.54749	NaN	1	1	Median	0.74909	0.73745	NaN	1	1	Median	72359000	45087000	27272000	0	0	0	9247800	8026900	1221000	35511000	23519000	11992000	27600000	13541000	14059000	47493	3552	44701	286602;286603;286604	384346;384347;384348	384348			3	
SQMDGLIPGVEPR	0	Unmodified	1397.6973	0.6972994	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.203	63.154	2	0.031661	55889	160511_QHF_FH_JSI9i_1	56.205	40.067			1.1056	0.89293	NaN	1	0	Median	1.1056	0.89293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49746000	26424000	23322000	49746000	26424000	23322000	0	0	0	0	0	0	0	0	0	47494	5544	44702	286605	384349	384349			0	
SQMESMLISGYALNCVVGSQGMPK	1	Unmodified	2586.195	0.19503605	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	100.29	100.17	3	6.2401E-23	88645	160511_QHF_FH_JSI10i_2	139.46	131.93			1.1331	1.1803	42.9	6	1	Median	NaN	NaN	NaN	0	0	Median	0.81687	0.97819	11.83	2	1	Median	0.93261	0.9085	51.743	2	0	Median	1.7012	1.8724	7.1884	2	0	Median	262540000	133250000	129290000	0	0	0	63154000	36740000	26414000	106030000	61494000	44539000	93352000	35017000	58334000	47495	1132	44703	286606;286607;286608;286609;286610;286611	384350;384351;384352;384353;384354;384355;384356;384357	384357			8	
SQMFEGVAR	0	Unmodified	1023.4808	0.48076468	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			32.073	31.134	2	0.057555	27206	160511_QHF_FH_JSI10i_2	34.173	9.2498			6.83	8.2448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6.83	8.2448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157320000	28417000	128900000	0	0	0	157320000	28417000	128900000	0	0	0	0	0	0	47496	5463	44704	286612	384358	384358			1	
SQMLAMNIEK	1	Unmodified	1163.5679	0.56786513	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							3	2	2	1	49.395	48.54	2	1.3389E-07	41833	160511_QHF_FH_JSI11i_2	136.02	97.001			1.0382	0.99497	11.063	7	0	Median	1.1882	1.0031	4.8418	2	0	Median	0.818	0.97475	2.9035	2	0	Median	0.97474	0.96842	12.007	2	0	Median	1.1438	1.2634	NaN	1	0	Median	1294700000	683460000	611270000	234140000	118290000	115860000	341720000	183910000	157810000	470440000	244520000	225920000	248420000	136740000	111680000	47497	1909	44705	286613;286614;286615;286616;286617;286618;286619;286620	384359;384360;384361;384362;384363;384364;384365;384366;384367;384368;384369;384370	384368			12	
SQMLLSR	0	Unmodified	833.44292	0.44292261	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.047	23.702	2	0.0034316	19746	160511_QHF_FH_JSI11i_2	94.114	53.846			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47498	4336	44706	286621	384371	384371			1	
SQMSGVEAAASDPSEK	1	Unmodified	1592.6988	0.69881554	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.295	26.942	2	4.1256E-15	23805	160511_QHF_FH_JSI10i_1	160.78	137.4			0.94368	1.1084	35.176	3	2	Median	NaN	NaN	NaN	0	0	Median	0.94368	1.1084	NaN	1	0	Median	1.7092	1.6773	NaN	1	1	Median	0.77809	0.83332	NaN	1	1	Median	128040000	55090000	72950000	0	0	0	42618000	17569000	25049000	41246000	13158000	28087000	44177000	24363000	19814000	47499	2938	44707	286622;286623;286624;286625	384372;384373;384374;384375;384376	384374			5	
SQMTQEASDEAEDMK	1	Unmodified	1698.6713	0.67128016	5183	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.825	32.586	2	6.2722E-27	29183	160511_QHF_FH_JSI11i_1	145.6	127.74			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47500	5183	44708	286626	384377	384377			1	
SQNGEFMTHK	1	Unmodified	1177.5186	0.51860675	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	11.02	10.656	2	9.8207E-05	8599	160511_QHF_FH_JSI10i_2	100.48	59.448			0.44213	0.4845	41.122	2	2	Median	NaN	NaN	NaN	0	0	Median	0.2874	0.36225	NaN	1	1	Median	0.68016	0.64801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28505000	20090000	8414300	0	0	0	11527000	9544700	1982700	16977000	10546000	6431600	0	0	0	47501	2233	44709	286627;286628;286629	384378;384379;384380	384380			3	
SQNGGEPDFHAVEPYTK	1	Unmodified	1874.8435	0.84350594	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		43.969	43.486	3	0.00010594	37370	160511_QHF_FH_JSI11i_2	74.519	69.76			1.1253	1.122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1253	1.122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52337000	22400000	29938000	0	0	0	0	0	0	52337000	22400000	29938000	0	0	0	47502	1528	44710	286630	384381	384381			1	
SQNIVTDSSSLSAEAIR	0	Unmodified	1776.8854	0.88537076	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	69.253	68.708	2	2.1202E-12	50631	160511_QHF_FH_JSI10i_1	182.02	158.34			0.79471	0.95903	10.901	10	5	Linear	1.0723	0.87219	20.671	2	1	Median	0.80653	0.93321	9.5595	3	2	Plateau	0.93086	0.90774	0.11558	2	0	Median	0.73258	0.75356	4.6168	3	2	Median	1242600000	644410000	598200000	283850000	124560000	159290000	370690000	210040000	160650000	278220000	143010000	135210000	309850000	166800000	143050000	47503	2162	44711	286631;286632;286633;286634;286635;286636;286637;286638;286639;286640	384382;384383;384384;384385;384386;384387;384388;384389	384388			8	
SQNPHGLK	1	Unmodified	879.45626	0.45626449	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	5.3025	-1.6298	2	0.0072255	1617	160513_QHF_FH_JSI11Kac_6	65.038	29.158			0.39796	0.43999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39796	0.43999	NaN	1	1	Median	1291600	863950	427650	0	0	0	0	0	0	0	0	0	1291600	863950	427650	47504	2453	44712	286641;286642	384390;384391	384390			2	
SQNPPQSK	1	Unmodified	884.43519	0.4351947	3897	Q92879;O95319	CELF1;CELF2	CUGBP Elav-like family member 1;CUGBP Elav-like family member 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	3.9348	3.6365	2	0.00045611	1558	160511_QHF_FH_JSI11i_1	107.66	59.161			1.0305	0.83932	35.629	5	1	Median	1.0305	0.83932	NaN	1	0	Median	0.75014	0.8779	61.591	2	1	Median	1.3456	1.2632	NaN	1	0	Median	0.78038	0.81357	NaN	1	0	Median	409280000	210300000	198990000	134780000	65599000	69186000	134830000	73886000	60939000	64164000	30202000	33962000	75511000	40608000	34903000	47505	3897	44713	286643;286644;286645;286646;286647	384392;384393;384394;384395;384396;384397;384398;384399;384400;384401;384402;384403	384394			12	
SQNTDMVQK	1	Unmodified	1049.4812	0.48115861	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	9.5486	9.1831	2	2.0328E-07	7096	160511_QHF_FH_JSI12i_1	140.45	111.3			0.89901	0.96178	22.799	4	2	Median	0.79072	0.64607	NaN	1	1	Median	0.76961	0.91542	NaN	1	1	Median	1.0549	1.0105	NaN	1	0	Median	1.0221	1.0776	NaN	1	0	Median	516450000	271100000	245350000	90753000	59298000	31455000	132750000	66742000	66013000	149150000	65982000	83164000	143800000	79075000	64722000	47506	2558	44714	286648;286649;286650;286651	384404;384405;384406;384407	384405			4	
SQNTELASTASLLR	0	Unmodified	1489.7736	0.77363546	1118	P17535	JUND	Transcription factor jun-D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	56.844	55.913	2	3.7697E-07	47921	160511_QHF_FH_JSI12i_2	88.441	54.565			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47507	1118	44715	286652;286653	384408;384409	384408			2	
SQNTPDSSASNLGFR	0	Unmodified	1579.7227	0.72266253	3595	Q8NBK3	SUMF1	Sulfatase-modifying factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.3	34.696	2	8.8395E-05	31447	160511_QHF_FH_JSI12i_1	109.6	90.819			0.96861	0.94946	33.315	4	0	Median	0.78309	0.65904	NaN	1	0	Median	0.64797	0.75312	NaN	1	0	Median	1.2157	1.197	NaN	1	0	Median	1.1981	1.2885	NaN	1	0	Median	127640000	65398000	62242000	27486000	15714000	11773000	29083000	16233000	12850000	27574000	13171000	14404000	43496000	20280000	23216000	47508	3595	44716	286654;286655;286656;286657	384410;384411;384412;384413;384414	384412			4	
SQNVMAAASIANIVK	1	Unmodified	1515.8079	0.80791248	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.82	8	8	9				3	6	1	9	9	10	7	76.095	72.761	2;3	1.1648E-21	65295	160511_QHF_FH_JSI9i_2	209.64	175.68			0.94772	0.91767	11.422	33	1	Median	1.0816	0.90541	9.7479	9	0	Median	0.73376	0.86799	8.4291	8	0	Median	0.91915	0.92924	11.258	10	0	Median	0.99383	1.0674	10.66	6	1	Median	3765000000	2002600000	1762300000	713210000	314410000	398810000	874360000	521100000	353260000	1292700000	703200000	589490000	884700000	463920000	420780000	47509	1132	44717	286658;286659;286660;286661;286662;286663;286664;286665;286666;286667;286668;286669;286670;286671;286672;286673;286674;286675;286676;286677;286678;286679;286680;286681;286682;286683;286684;286685;286686;286687;286688;286689;286690;286691;286692	384415;384416;384417;384418;384419;384420;384421;384422;384423;384424;384425;384426;384427;384428;384429;384430;384431;384432;384433;384434;384435;384436;384437;384438;384439;384440;384441;384442;384443;384444;384445;384446;384447;384448;384449;384450;384451;384452;384453;384454;384455;384456;384457;384458;384459;384460;384461;384462;384463;384464;384465;384466;384467;384468;384469;384470;384471;384472;384473;384474;384475;384476;384477;384478;384479;384480;384481	384458			67	
SQNVMAAASIANIVK	1	Oxidation (M)	1531.8028	0.8028271	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	4.74		1	1			1	1	7		3	4	2	2	70.746	61.133	2;3	4.8516E-11	32731	160513_QHF_FH_JSI11Kac_5	129.37	106.45			0.87812	0.89956	8.2263	9	1	Median	1.0099	0.83812	1.3231	2	0	Median	0.73191	0.86157	6.7334	3	0	Plateau	0.9402	0.92871	14.027	2	0	Median	0.90643	0.96945	5.3109	2	1	Median	95033000	50250000	44783000	10748000	4947600	5800000	20212000	10818000	9394800	29940000	16861000	13079000	34133000	17624000	16509000	47510	1132	44717	286693;286694;286695;286696;286697;286698;286699;286700;286701;286702;286703	384482;384483;384484;384485;384486;384487;384488;384489;384490;384491;384492;384493;384494;384495;384496;384497	384491		760	16	
SQPAFMQSSLSQPSVVLSGTAIHNFPTVQHQELAK	1	Unmodified	3763.8992	0.89919369	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	89.751	89.221	4	4.3134E-34	78456	160511_QHF_FH_JSI9i_2	119.36	116.2			0.85361	0.88248	17.276	6	1	Median	1.2388	1.0343	11.125	2	0	Median	0.73681	0.89085	12.665	2	0	Median	0.88195	0.81391	NaN	1	0	Median	0.69564	0.68566	NaN	1	1	Median	392200000	218100000	174100000	117380000	51877000	65500000	157300000	90192000	67108000	90301000	56570000	33731000	27223000	19461000	7762100	47511	5646	44718	286704;286705;286706;286707;286708;286709	384498;384499;384500;384501;384502;384503;384504;384505;384506;384507;384508;384509;384510	384506			13	
SQPAILLLTAAR	0	Unmodified	1252.7503	0.75032125	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.2		2	3				2	2	4	2	4	4	3	79.416	73.382	2	2.9482E-05	39102	160513_QHF_FH_JSI11Kac_6	96.604	63.226			1.0879	1.1052	11.44	13	1	Median	1.1819	1.0026	9.2033	2	1	Median	0.9227	1.0726	17.457	4	0	Median	1.1272	1.0167	10.37	4	0	Linear	1.0586	1.1526	3.2478	3	0	Median	1065200000	533600000	531630000	239670000	120240000	119440000	344580000	177610000	166970000	260980000	132300000	128680000	219990000	103450000	116540000	47512	2906	44719	286710;286711;286712;286713;286714;286715;286716;286717;286718;286719;286720;286721;286722	384511;384512;384513;384514;384515;384516;384517;384518;384519;384520;384521;384522;384523;384524;384525;384526;384527	384513			16	
SQPAPAEFR	0	Unmodified	1001.493	0.49304393	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	21.043	20.403	2	0.00010355	17299	160511_QHF_FH_JSI9i_1	93.429	65.255			0.94194	0.96438	5.2407	6	0	Median	1.1529	0.96855	8.9755	2	0	Median	0.81904	0.99673	6.2154	2	0	Median	0.99285	0.97501	NaN	1	0	Median	0.89363	0.94857	NaN	1	0	Median	488800000	246370000	242430000	118900000	55000000	63896000	148500000	82230000	66274000	127880000	64335000	63545000	93522000	44809000	48713000	47513	1256	44720	286723;286724;286725;286726;286727;286728;286729	384528;384529;384530;384531;384532;384533	384530			6	
SQPDMAIMAVNSFVK	1	Unmodified	1636.7953	0.79529888	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	6	10								2	6	4	4	88.78	88.293	2;3	6.1371E-12	78414	160511_QHF_FH_JSI10i_2	103.88	91.083			0.96144	1.0445	10.841	15	3	Median	1.179	1.0057	5.9271	2	0	Median	0.91277	1.0772	8.7246	5	3	Median	1.0051	0.99573	11.847	4	0	Median	0.94955	1.0494	16.308	4	0	Median	678360000	329560000	348800000	96610000	45079000	51532000	202700000	106890000	95806000	215570000	102330000	113230000	163480000	75257000	88224000	47514	2046	44721	286730;286731;286732;286733;286734;286735;286736;286737;286738;286739;286740;286741;286742;286743;286744;286745	384534;384535;384536;384537;384538;384539;384540;384541;384542;384543;384544;384545;384546;384547;384548;384549;384550;384551;384552;384553;384554;384555;384556;384557;384558;384559	384559			26	
SQPDMAIMAVNTFVK	1	Unmodified	1650.8109	0.81094895	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								3	3	3	2	90.351	89.924	2;3	1.5209E-05	81896	160511_QHF_FH_JSI11i_1	109.55	102.14			1.0717	1.1168	42.694	11	3	Median	1.7044	1.3897	68.103	3	2	Median	1.0022	1.1935	20.538	3	1	Plateau	1.0148	1.0133	5.1055	3	0	Plateau	1.0578	1.1113	4.3041	2	0	Median	383260000	177640000	205620000	94142000	31366000	62776000	116710000	64150000	52564000	116190000	53658000	62535000	56216000	28465000	27751000	47515	2296	44722	286746;286747;286748;286749;286750;286751;286752;286753;286754;286755;286756	384560;384561;384562;384563;384564;384565;384566;384567;384568	384562			9	
SQPEPLVVK	1	Unmodified	995.56515	0.56514624	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	34.425	30.284	2	2.1492E-06	26606	160511_QHF_FH_JSI11i_1	127.68	73.522			1.0031	1.0071	9.138	7	0	Median	1.2671	1.0483	NaN	1	0	Median	0.75803	0.89231	7.067	2	0	Median	1.0442	1.0168	1.3473	2	0	Median	0.90535	0.96142	14.28	2	0	Median	2335500000	1221000000	1114500000	553990000	265650000	288340000	498860000	296230000	202630000	577490000	266680000	310820000	705130000	392410000	312710000	47516	2374	44723	286757;286758;286759;286760;286761;286762;286763	384569;384570;384571;384572;384573;384574;384575;384576;384577;384578;384579;384580	384570			12	
SQPEPSPVLSQLSQR	0	Unmodified	1651.8529	0.85294842	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								3	1	4	2	54.708	53.823	2	0.00047542	46529	160511_QHF_FH_JSI11i_2	69.451	45.159			0.86166	0.81885	23.162	7	4	Median	1.368	1.1068	33.542	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.85561	0.82771	25.626	2	2	Median	0.83032	0.88152	10.43	2	0	Median	253770000	132980000	120790000	91206000	42843000	48363000	0	0	0	92492000	48839000	43652000	70074000	41297000	28778000	47517	2950	44724	286764;286765;286766;286767;286768;286769;286770;286771;286772;286773	384581;384582;384583;384584;384585;384586;384587;384588;384589	384587			9	
SQPFTLQDLEK	1	Unmodified	1304.6612	0.66123147	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				66.402	65.391	2	0.041589	58088	160511_QHF_FH_JSI9i_1	45.158	27.294			1.8695	1.5741	NaN	1	1	Median	1.8695	1.5741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27494000	7800800	19693000	27494000	7800800	19693000	0	0	0	0	0	0	0	0	0	47518	4997	44725	286774	384590	384590			1	
SQPFTLR	0	Unmodified	847.4552	0.45520186	3744	Q8TF64	GIPC3	PDZ domain-containing protein GIPC3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	32.468	31.72	2	0.039266	26561	160511_QHF_FH_JSI12i_3	47.743	30.779			1.2335	1.1332	5.3078	2	0	Median	1.3235	1.0915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1497	1.1766	NaN	1	0	Median	99373000	40231000	59142000	32182000	11343000	20839000	0	0	0	0	0	0	67192000	28888000	38303000	47519	3744	44726	286775;286776	384591	384591			1	
SQPFVDHVFTFTILDNR	0	Unmodified	2035.0163	0.016325351	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	4	4	3	2	94.756	92.29	2;3	9.0569E-69	45953	160513_QHF_FH_JSI10Kac_6	311.26	274.94			0.92667	0.98631	37.934	12	5	Median	0.4133	0.35648	66.695	4	3	Linear	0.84753	0.99586	8.0183	3	1	Plateau	1.0438	0.97811	8.9056	3	0	Median	0.74371	0.79516	11.081	2	1	Median	4516500000	2929800000	1586600000	2201300000	1654300000	547000000	1828300000	1016600000	811700000	248420000	127030000	121380000	238470000	131920000	106550000	47520	3723	44727	286777;286778;286779;286780;286781;286782;286783;286784;286785;286786;286787;286788;286789	384592;384593;384594;384595;384596;384597;384598;384599;384600;384601;384602;384603;384604;384605;384606;384607;384608;384609	384609			18	
SQPGSSASSSSGVK	1	Unmodified	1264.5895	0.58952309	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.0146	5.9096	2	1.5358E-07	3923	160511_QHF_FH_JSI10i_1	96.604	80.402			1.1533	1.0877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1533	1.0877	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23717000	7396400	16321000	0	0	0	0	0	0	23717000	7396400	16321000	0	0	0	47521	2278	44728	286790;286791	384610;384611	384611			2	
SQPISSPVILQFGHAETLLPLLSLMGYFK	1	Unmodified	3185.7199	0.71987933	5449	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		100.73	92.887	3;4	3.435E-202	52602	160513_QHF_FH_JSI11Kac_6	290.96	273.43			0.85717	1.092	13.907	5	0	Linear	1.0378	0.88074	20.209	2	0	Median	0.802	0.96195	9.0058	2	0	Median	0.81886	0.78389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1119900000	596810000	523070000	277670000	123590000	154080000	716500000	407550000	308960000	125710000	65678000	60036000	0	0	0	47522	5449	44729	286792;286793;286794;286795;286796	384612;384613;384614;384615;384616;384617;384618;384619	384613			8	
SQPLVHLMK	1	Unmodified	1051.5848	0.58483582	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	35.65	35.222	2;3	0.00020433	29767	160511_QHF_FH_JSI12i_3	72.643	55.412			1.4785	1.4612	31.368	4	1	Median	NaN	NaN	NaN	0	0	Median	0.69069	0.79745	NaN	1	0	Median	1.6295	1.5486	NaN	1	0	Median	1.4785	1.4612	0.27047	2	1	Median	331990000	178630000	153360000	0	0	0	66707000	40551000	26156000	107740000	57222000	50523000	157530000	80853000	76681000	47523	701	44730	286797;286798;286799;286800	384620;384621;384622;384623;384624	384622			4	
SQPNHTPAGPPGPSSNPVSNGK	1	Unmodified	2126.0141	0.01409352	4344	Q9BQ15	NABP2	SOSS complex subunit B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	23.926	23.449	3	2.2326E-13	19940	160511_QHF_FH_JSI11i_3	116.45	106.28			1.0889	1.0193	7.9047	4	0	Median	1.1052	0.96892	NaN	1	0	Median	0.74407	0.91961	NaN	1	0	Median	1.1018	1.0722	NaN	1	0	Median	1.0762	1.0814	NaN	1	0	Median	146140000	77343000	68796000	18328000	9719100	8609100	28564000	16191000	12373000	63036000	32147000	30889000	36211000	19286000	16925000	47524	4344	44731	286801;286802;286803;286804	384625;384626;384627;384628;384629;384630;384631;384632;384633;384634	384627			10	
SQPNIPK	1	Unmodified	782.42865	0.42865276	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	17.117	14.058	2	0.010327	12064	160511_QHF_FH_JSI12i_1	75.311	40.205			0.7418	0.80846	21.6	5	0	Median	NaN	NaN	NaN	0	0	Median	0.68292	0.80846	NaN	1	0	Median	0.87165	0.84244	20.344	2	0	Median	0.84192	0.91259	36.546	2	0	Median	341690000	190630000	151060000	0	0	0	112380000	66798000	45584000	119580000	63473000	56103000	109730000	60362000	49369000	47525	5242	44732	286805;286806;286807;286808;286809	384635;384636;384637	384635			3	
SQPNSKFAK	2	Acetyl (K)	1047.5349	0.53490874	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	24.553	16.909	2	0.016685	10501	160513_QHF_FH_JSI12Kac_4	56.729	15.7			0.94537	1.0237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94537	1.0237	NaN	1	0	Median	6804700	3200600	3604100	0	0	0	0	0	0	0	0	0	6804700	3200600	3604100	47526	3857	44733	286810	384638	384638	2967		1	
SQPPSIYNASATSVFHK	1	Unmodified	1832.9057	0.90571227	395	O43933	PEX1	Peroxisome biogenesis factor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	55.647	54.97	3	4.817E-06	47245	160511_QHF_FH_JSI12i_3	98.573	81.505			1.4049	1.4614	27.911	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.91706	1.0457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4049	1.4614	28.479	2	2	Median	147710000	72956000	74750000	0	0	0	14265000	7416700	6848200	0	0	0	133440000	65539000	67902000	47527	395	44734	286811;286812;286813	384639;384640;384641	384641			3	
SQPSKTLFVK	2	Acetyl (K)	1175.655	0.65502388	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	58.178	47.43	2	0.00020564	26167	160513_QHF_FH_JSI10Kac_4	98.249	69.162			0.78717	0.92345	22.264	6	0	Median	NaN	NaN	NaN	0	0	Median	0.78717	0.93805	1.9631	2	0	Median	0.67336	0.65875	3.6548	2	0	Median	0.9267	1.0293	15.598	2	0	Median	123690000	65710000	57977000	0	0	0	37601000	21993000	15607000	35738000	19253000	16485000	50349000	24464000	25885000	47528	1154	44735	286814;286815;286816;286817;286818;286819	384642;384643;384644;384645;384646;384647;384648;384649	384643	1019		8	
SQPSSLQPK	1	Unmodified	970.50836	0.50835964	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		11.613	11.207	2	0.00023439	8702	160511_QHF_FH_JSI9i_1	99.442	76.37			0.95272	0.91832	25.162	3	2	Median	0.95272	0.78173	NaN	1	1	Median	0.78262	0.91832	NaN	1	0	Median	1.3018	1.2804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	365220000	175870000	189350000	107290000	60770000	46520000	141280000	62163000	79119000	116650000	52939000	63706000	0	0	0	47529	2950	44736	286820;286821;286822	384650;384651;384652	384652			3	
SQPVDYFILILQGR	0	Unmodified	1647.8984	0.89844205	3633	Q8NE01	CNNM3	Metal transporter CNNM3	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		96.938	87.531	2	0.0015891	49875	160513_QHF_FH_JSI11Kac_6	100.19	59.472			0.72593	0.6972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72593	0.6972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71879000	38469000	33410000	0	0	0	0	0	0	71879000	38469000	33410000	0	0	0	47530	3633	44737	286823	384653	384653			1	
SQPVSQPLTYESGPDEVR	0	Unmodified	1987.9487	0.9486993	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.732	47.053	2	1.3529E-11	42475	160511_QHF_FH_JSI11i_1	173.44	152.6			0.90233	0.88119	3.3449	4	0	Median	1.0673	0.88176	NaN	1	0	Median	0.75336	0.88062	NaN	1	0	Median	0.88881	0.87661	NaN	1	0	Median	0.91605	0.94034	NaN	1	0	Median	400370000	199890000	200480000	94032000	40829000	53203000	91839000	47792000	44047000	113970000	61428000	52544000	100530000	49837000	50690000	47531	4751	44738	286824;286825;286826;286827	384654;384655;384656;384657;384658;384659;384660;384661	384655			8	
SQPVTTSESK	1	Unmodified	1062.5193	0.51931826	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	7.5851	5.8595	2	3.3155E-05	4922	160511_QHF_FH_JSI12i_1	96.143	69.181			0.73276	0.8384	35.609	5	1	Median	1.1399	0.93017	NaN	1	0	Median	0.7222	0.8384	NaN	1	0	Median	1.097	1.056	60.45	2	1	Median	0.65797	0.67288	NaN	1	0	Median	323850000	178100000	145750000	102450000	54622000	47829000	70785000	34621000	36164000	64576000	31553000	33023000	86036000	57303000	28733000	47532	3849	44739	286828;286829;286830;286831;286832	384662;384663;384664;384665;384666;384667;384668	384664			7	
SQPVYIQYSNHR	0	Unmodified	1490.7266	0.72662569	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	36.728	27.679	3	3.7486E-05	15004	160513_QHF_FH_JSI9Kac_6	89.013	85.296			1.0035	1.0758	4.5786	4	0	Median	1.2669	1.0792	NaN	1	0	Median	0.89062	1.0725	NaN	1	0	Median	1.1189	1.0825	NaN	1	0	Median	0.89995	0.98406	NaN	1	0	Median	42279000	20479000	21799000	8076800	3619400	4457400	20215000	10118000	10097000	8529100	3835300	4693700	5457500	2906800	2550700	47533	724	44740	286833;286834;286835;286836	384669;384670;384671;384672;384673;384674;384675	384672			7	
SQQALVQK	1	Unmodified	900.50288	0.50288033	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.04	4	4				3	4			2	5	4	4	12.282	8.2523	2	0.00011874	7889	160511_QHF_FH_JSI12i_1	127.56	31.944			0.90132	1.0049	18.195	15	2	Median	1.1982	0.98005	21.177	2	0	Median	0.90132	1.0734	24.466	5	2	Median	0.97614	0.95662	23.04	4	0	Median	0.86412	0.93289	7.1193	4	0	Median	4811100000	1907000000	2904100000	1144100000	435210000	708870000	1271500000	543460000	728040000	1121200000	441760000	679400000	1274400000	486620000	787790000	47534	1246	44741	286837;286838;286839;286840;286841;286842;286843;286844;286845;286846;286847;286848;286849;286850;286851	384676;384677;384678;384679;384680;384681;384682;384683;384684;384685;384686;384687;384688;384689;384690;384691;384692;384693;384694;384695;384696;384697;384698	384680			23	
SQQALVQKR	1	Acetyl (K)	1098.6146	0.61455605	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	1.09					4	3	3	2			4	5	3	26.164	18.216	2	3.6747E-23	11833	160513_QHF_FH_JSI11Kac_4	185.6	111.47			0.73428	0.80895	77.749	11	1	Median	NaN	NaN	NaN	0	0	Median	1.0453	1.2072	7.1723	4	0	Median	0.4052	0.39958	134.92	4	1	Median	0.73428	0.80825	4.7647	3	0	Plateau	289450000	180990000	108470000	0	0	0	80027000	39621000	40406000	153530000	108660000	44866000	55900000	32708000	23192000	47535	1246	44742	286852;286853;286854;286855;286856;286857;286858;286859;286860;286861;286862;286863	384699;384700;384701;384702;384703;384704;384705;384706;384707;384708;384709;384710;384711;384712;384713;384714;384715;384716	384705	1145		18	
SQQELEAK	1	Unmodified	931.46108	0.4610751	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	8.7645	7.0203	2	0.00033706	5983	160511_QHF_FH_JSI12i_1	111.61	42.692			0.94234	0.92652	13.404	5	0	Median	1.1182	0.92652	NaN	1	0	Median	0.94234	1.1196	NaN	1	0	Median	0.86155	0.8314	1.9732	2	0	Median	0.99012	1.042	NaN	1	0	Median	641400000	341350000	300050000	160240000	83742000	76496000	174880000	101580000	73299000	166630000	91397000	75237000	139640000	64623000	75017000	47536	2485	44743	286864;286865;286866;286867;286868	384717;384718;384719	384717			3	
SQQERDWVLNEFK	1	Unmodified	1677.8111	0.8110836	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	4	2	59.722	59.2	2;3	1.1307E-05	52102	160511_QHF_FH_JSI11i_3	119.32	103.37			1.0586	1.0113	11.753	10	0	Median	1.2118	1.0319	0.80189	2	0	Median	0.79926	0.97883	1.5211	2	0	Median	1.0586	1.0201	11.478	4	0	Median	1.0822	1.1109	25.174	2	0	Median	1308600000	617200000	691380000	148480000	61839000	86642000	299820000	169600000	130220000	624990000	271010000	353980000	235290000	114750000	120530000	47537	1128	44744	286869;286870;286871;286872;286873;286874;286875;286876;286877;286878	384720;384721;384722;384723;384724;384725;384726;384727;384728;384729;384730;384731;384732;384733	384722			14	
SQQERDWVLNEFKHGK	2	Acetyl (K)	2041.997	0.99698689	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		68.808	59.246	3	0.0030244	32109	160513_QHF_FH_JSI11Kac_6	62.861	53.073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47538	1128	44745	286879	384734	384734	977		1	
SQQGYVATPPYSQPQPGIGLSPPHYGHYGDPSHTASPTGMMK	1	Acetyl (Protein N-term)	4465.0532	0.053204503	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	1	0	0			By MS/MS		3	0			1									1		75.037	75.037	4	1.2527E-05	66952	160511_QHF_FH_JSI11i_3	36.244	32.051			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13230000	13230000	0	0	0	0	0	0	0	13230000	13230000	0	0	0	0	47539	614	44746	286880	384735	384735			1	
SQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAK	1	Unmodified	3725.9352	0.93518526	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		94.985	86.941	5	2.7943E-108	48780	160513_QHF_FH_JSI11Kac_6	228.33	208.3			0.85187	0.7905	34.9	3	0	Median	0.85187	0.71974	NaN	1	0	Median	0.67327	0.7905	NaN	1	0	Median	1.4596	1.373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	466770000	272350000	194410000	126350000	66410000	59942000	171920000	114960000	56961000	168500000	90989000	77508000	0	0	0	47540	2402	44747	286881;286882;286883	384736;384737;384738;384739;384740	384736			5	
SQQLDSNVTMPK	1	Unmodified	1346.65	0.65001485	215	O14893	GEMIN2	Gem-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		35.077	34.557	2	4.6704E-05	30356	160511_QHF_FH_JSI9i_1	110.66	73.47			0.9027	0.96576	47.545	4	4	Median	2.2187	1.8083	NaN	1	1	Median	1.0315	1.2157	NaN	1	1	Median	0.71536	0.69295	14.396	2	2	Median	NaN	NaN	NaN	0	0	Median	234410000	128510000	105890000	58743000	20033000	38711000	52568000	28326000	24242000	123090000	80154000	42940000	0	0	0	47541	215	44748	286884;286885;286886;286887	384741;384742;384743;384744	384744			4	
SQQLDSNVTMPK	1	Oxidation (M)	1362.6449	0.64492948	215	O14893	GEMIN2	Gem-associated protein 2	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				35.867	34.634	2	0.010435	30481	160511_QHF_FH_JSI9i_1	56.359	27.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47542	215	44748	286888	384745	384745		88	1	
SQQLESLQEIK	1	Unmodified	1301.6827	0.68269519	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	44.668	43.446	2	0.00010522	38576	160511_QHF_FH_JSI9i_1	86.344	70.805			0.91388	0.74659	NaN	1	0	Median	0.91388	0.74659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26935000	13732000	13203000	26935000	13732000	13203000	0	0	0	0	0	0	0	0	0	47543	2648	44749	286889;286890	384746;384747	384747			2	
SQQLSALQEENVK	1	Unmodified	1472.7471	0.74708636	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	36.227	35.558	2	2.0953E-24	31864	160511_QHF_FH_JSI11i_1	158.04	102.47			0.90484	0.4441	35.052	6	5	Linear	1.22	1.0015	44.06	2	2	Median	1.1199	1.3339	34.264	2	2	Median	0.90428	0.85551	NaN	1	1	Median	0.69237	0.71384	NaN	1	0	Median	346720000	174200000	172520000	93882000	45541000	48341000	115770000	54981000	60785000	66036000	34555000	31481000	71036000	39128000	31909000	47544	1360	44750	286891;286892;286893;286894;286895;286896;286897;286898;286899	384748;384749;384750;384751;384752;384753;384754;384755;384756	384749			9	
SQQLSNDHICYFLYQILR	0	Unmodified	2297.1263	0.12628651	1289	P27361	MAPK3	Mitogen-activated protein kinase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	91.789	83.61	3	2.2972E-44	46564	160513_QHF_FH_JSI11Kac_6	184.8	157.65			1.3437	0.98526	22.549	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.83554	0.98526	NaN	1	1	Median	0.99243	0.93564	NaN	1	0	Median	1.3437	1.4152	NaN	1	0	Median	841480000	384090000	457390000	0	0	0	226540000	113810000	112730000	152610000	70283000	82329000	462330000	200000000	262330000	47545	1289	44751	286900;286901;286902	384757;384758;384759;384760	384757			4	
SQQNDEEPVATSQLLK	1	Unmodified	1785.8745	0.87447172	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	48.847	48.06	2	7.2962E-23	43232	160511_QHF_FH_JSI10i_1	182.89	143.62			0.88313	0.85698	6.2201	5	2	Median	1.0944	0.88748	8.4308	2	2	Median	0.76993	0.92765	NaN	1	0	Median	0.88313	0.85698	NaN	1	0	Median	0.7971	0.8206	NaN	1	0	Median	345440000	166250000	179200000	137010000	59437000	77575000	67066000	32269000	34796000	76501000	42855000	33646000	64865000	31687000	33178000	47546	2947	44752	286903;286904;286905;286906;286907	384761;384762;384763;384764;384765;384766;384767;384768	384765			8	
SQQPLKPQVHTPVATVK	2	Unmodified	1857.0472	0.047231549	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			34.191	32.766	3	1.6333E-06	27333	160511_QHF_FH_JSI10i_3	112.8	96.399			0.7214	0.69654	34.39	2	2	Median	1.0636	0.88829	NaN	1	1	Median	0.48931	0.54618	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56102000	30916000	25186000	34984000	18433000	16551000	21118000	12483000	8634700	0	0	0	0	0	0	47547	3102	44753	286908;286909;286910;286911	384769;384770;384771;384772	384769			4	
SQQQDDIEELETK	1	Unmodified	1561.7108	0.71076044	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.138	38.512	2	1.0902E-40	34586	160511_QHF_FH_JSI11i_1	198.49	172.44			1.2466	1.1273	23.682	4	0	Median	1.3503	1.1143	NaN	1	0	Median	1.5303	1.8031	NaN	1	0	Median	1.1509	1.1276	NaN	1	0	Median	1.0977	1.1271	NaN	1	0	Median	456210000	208450000	247760000	84994000	37953000	47042000	134320000	58356000	75967000	140080000	57234000	82845000	96817000	54911000	41906000	47548	4714	44754	286912;286913;286914;286915	384773;384774;384775;384776;384777;384778;384779;384780;384781	384774			9	
SQQQPTPVTPK	1	Unmodified	1209.6354	0.63535107	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.617	14.163	2	1.5202E-07	11530	160511_QHF_FH_JSI9i_1	123.75	92.675			0.93441	0.87471	14.598	4	0	Median	1.0133	0.84299	NaN	1	0	Median	0.7107	0.84785	NaN	1	0	Median	1.1772	1.1493	NaN	1	0	Median	0.86167	0.90241	NaN	1	0	Median	211440000	110020000	101410000	44903000	21984000	22919000	63900000	35578000	28323000	53960000	25318000	28642000	48672000	27145000	21528000	47549	666	44755	286916;286917;286918;286919	384782;384783;384784;384785	384785			4	
SQQQQLVESLHK	1	Unmodified	1423.7419	0.74194141	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		2						2		1	1	1	1	35.982	30.401	3	0.00098353	25560	160511_QHF_FH_JSI12i_2	54.871	41.89			0.92887	0.98687	25.423	4	2	Median	0.83588	0.67063	NaN	1	1	Median	1.0035	1.2358	NaN	1	1	Median	1.013	1.0039	NaN	1	0	Median	0.85983	0.97014	NaN	1	0	Median	295410000	138290000	157120000	2428000	1234300	1193700	133890000	61647000	72248000	4427200	2241400	2185700	154660000	73168000	81488000	47550	3258	44756	286920;286921;286922;286923	384786;384787;384788;384789;384790	384786			5	
SQQSEVTR	0	Unmodified	933.45157	0.45157304	4669	Q9H299	SH3BGRL3	SH3 domain-binding glutamic acid-rich-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4	5.2	3					1				1	1		2	4.8327	2.1355	2	3.2523E-14	2421	160511_QHF_FH_JSI10i_1	149.94	32.768			0.51333	0.52023	5.5141	3	3	Median	0.59621	0.48946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50318	0.53316	3.4723	2	2	Median	1721400000	1093900000	627480000	458180000	273560000	184620000	0	0	0	0	0	0	1263200000	820310000	442860000	47551	4669	44757	286924;286925;286926;286927	384791;384792;384793;384794	384792			4	
SQQTLDTPK	1	Unmodified	1016.5138	0.51383895	2950	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				12.632	11.783	2	0.00052791	9206	160511_QHF_FH_JSI9i_1	83.358	43.811			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47552	2950	44758	286928	384795	384795			1	
SQQVAAAAHEANK	1	Unmodified	1323.6531	0.6531264	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.6451	8.0208	2	0.0022717	5805	160511_QHF_FH_JSI12i_2	68.44	50.129			17.689	19.198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17.689	19.198	NaN	1	1	Median	32847000	4453900	28393000	0	0	0	0	0	0	0	0	0	32847000	4453900	28393000	47553	2311	44759	286929	384796	384796			1	
SQREPGPGAK	1	Unmodified	1025.5254	0.52540669	2697	Q15654	TRIP6	Thyroid receptor-interacting protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			4.7755	4.2873	2	0.017722	2338	160511_QHF_FH_JSI9i_3	58.955	34.032			1.1953	1.1773	24.978	2	0	Median	1.6685	1.4048	NaN	1	0	Median	0.85634	0.98672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86823000	40573000	46250000	34246000	15255000	18991000	52577000	25318000	27259000	0	0	0	0	0	0	47554	2697	44760	286930;286931	384797	384797			1	
SQRPEESEPLEK	1	Unmodified	1427.6892	0.68923713	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.539	1	7	2							2	2	3	3	13.249	12.786	2;3	5.1573E-05	9906	160511_QHF_FH_JSI11i_2	90.412	74.873			0.9574	1.0421	12.273	9	1	Median	1.1024	0.92966	22.034	2	0	Median	0.77842	0.93937	5.395	2	0	Median	1.0491	1.0618	7.6839	3	1	Median	1.0174	1.1227	10.544	2	0	Median	749740000	366710000	383030000	154610000	57249000	97361000	146400000	89793000	56608000	298670000	140310000	158360000	150060000	79354000	70706000	47555	2970	44761	286932;286933;286934;286935;286936;286937;286938;286939;286940;286941	384798;384799;384800;384801;384802;384803;384804;384805;384806;384807;384808;384809	384804			12	
SQRYESLK	1	Unmodified	1009.5193	0.51925868	1610	P47914	RPL29	60S ribosomal protein L29	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	3	1	1	9.1937	8.7845	2;3	0.0026727	6518	160511_QHF_FH_JSI10i_3	89.029	55.026			1.0246	1.0721	12.411	7	0	Median	1.4447	1.1557	0.53841	2	0	Median	0.758	0.87583	14.855	3	0	Plateau	1.0246	0.94828	NaN	1	0	Median	1.0378	1.0721	NaN	1	0	Median	3285200000	1516600000	1768500000	1398200000	593420000	804740000	1473300000	735110000	738180000	376440000	165660000	210780000	37274000	22457000	14818000	47556	1610	44762	286942;286943;286944;286945;286946;286947;286948	384810;384811;384812;384813;384814;384815;384816;384817;384818;384819	384814			10	
SQSAAVTPSSTTSSTR	0	Unmodified	1566.7485	0.74854293	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	15.158	10.68	2	1.1726E-80	9391	160511_QHF_FH_JSI10i_1	245.55	217.81			0.94779	0.99032	6.4537	10	1	Median	1.2272	0.9981	NaN	1	0	Median	0.84672	0.98261	6.5566	3	0	Median	0.97074	0.95605	6.1138	3	1	Median	0.88096	0.938	8.4934	3	0	Plateau	1309400000	672930000	636450000	299050000	121180000	177880000	314520000	170230000	144280000	353460000	199870000	153590000	342350000	181650000	160700000	47557	2726	44763	286949;286950;286951;286952;286953;286954;286955;286956;286957;286958	384820;384821;384822;384823;384824;384825;384826;384827;384828;384829;384830;384831;384832;384833;384834;384835;384836	384827			17	
SQSADAPGPTER	0	Unmodified	1214.5527	0.55274365	4981	Q9NSC5	HOMER3	Homer protein homolog 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		8.7572	8.6346	2	0.0068122	6346	160511_QHF_FH_JSI11i_1	51.998	41.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47558	4981	44764	286959	384837	384837			1	
SQSAFDLK	1	Unmodified	894.4447	0.44469675	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	1	2	30.238	27.857	2	0.00057183	25032	160511_QHF_FH_JSI12i_1	103.83	66.187			1.0654	0.9867	25.608	5	0	Median	1.2094	0.9867	NaN	1	0	Median	0.60412	0.69606	NaN	1	0	Median	0.9017	0.87359	NaN	1	0	Median	1.1817	1.2344	15.962	2	0	Median	509590000	250920000	258680000	101600000	41391000	60214000	116400000	67772000	48624000	162010000	81856000	80151000	129580000	59897000	69687000	47559	679	44765	286960;286961;286962;286963;286964	384838;384839;384840;384841;384842;384843	384840			6	
SQSAFDLKK	2	Acetyl (K)	1064.5502	0.55022446	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	47.028	37.293	2	0.00021373	20235	160513_QHF_FH_JSI10Kac_3	127.4	85.289			0.94226	1.0729	94.551	6	1	Median	NaN	NaN	NaN	0	0	Median	0.90177	1.0729	0.74945	2	0	Median	2.7817	2.6956	182.33	2	1	Median	0.98892	1.0622	3.6132	2	0	Median	91300000	49935000	41365000	0	0	0	28326000	14003000	14322000	33352000	18232000	15119000	29623000	17700000	11923000	47560	679	44766	286965;286966;286967;286968;286969;286970	384844;384845;384846;384847;384848;384849;384850;384851;384852;384853	384853	341		10	
SQSASYYPVCHSK	1	Unmodified	1512.6667	0.66672755	4854	Q9HCD6	TANC2	Protein TANC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.781	40.144	2	0.013207	35422	160511_QHF_FH_JSI9i_1	45.137	31.367			0.97308	0.97987	17.442	4	0	Median	0.8834	0.75433	NaN	1	0	Median	0.79255	0.92494	NaN	1	0	Median	1.0719	1.0381	NaN	1	0	Median	1.0821	1.128	NaN	1	0	Median	208250000	98332000	109910000	65433000	30779000	34654000	41057000	25572000	15485000	60590000	23299000	37291000	41165000	18682000	22483000	47561	4854	44767	286971;286972;286973;286974	384854;384855	384855			2	
SQSEYKPDTPQSGLEYSGIQELEDR	1	Unmodified	2855.3097	0.309726	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	66.047	65.425	3	2.7038E-05	59581	160511_QHF_FH_JSI12i_1	73.058	60.129			0.40277	0.41837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40277	0.41837	NaN	1	0	Median	35274000	23956000	11317000	0	0	0	0	0	0	0	0	0	35274000	23956000	11317000	47562	2732	44768	286975	384856	384856			0	
SQSEYKPDTPQSGLEYSGIQELEDRR	1	Unmodified	3011.4108	0.41083703	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			61.498	60.639	4	7.8726E-07	53689	160511_QHF_FH_JSI10i_2	63.122	48.888			0.80758	1.0026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80758	1.0026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67245000	42427000	24819000	0	0	0	67245000	42427000	24819000	0	0	0	0	0	0	47563	2732	44769	286976	384857	384857			1	
SQSGGYSDR	0	Unmodified	955.39954	0.39953747	2486	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	1	3	2.7589	2.5085	2	0.00039322	1369	160511_QHF_FH_JSI10i_1	81.548	54.946			0.94825	0.91005	13.358	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84793	1.0052	24.527	2	0	Median	0.94825	0.90425	NaN	1	0	Median	0.91967	0.94574	5.4399	2	1	Median	193370000	105550000	87829000	0	0	0	106630000	59884000	46744000	38456000	21107000	17350000	48291000	24555000	23736000	47564	2486	44770	286977;286978;286979;286980;286981;286982	384858;384859;384860;384861;384862;384863;384864;384865;384866;384867;384868	384867			11	
SQSIDTPGVISR	0	Unmodified	1258.6517	0.65172941	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.67	6.13	1						2					2	1	40.274	34.832	2	0.0048871	20653	160513_QHF_FH_JSI11Kac_4	65.5	30.968			1.1971	1.1903	31.572	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5458	1.488	NaN	1	1	Median	0.92699	0.95211	NaN	1	1	Median	101080000	57409000	43671000	0	0	0	0	0	0	2702800	1455700	1247100	98377000	55953000	42423000	47565	4247	44771	286983;286984;286985	384869;384870;384871	384871			3	
SQSIVSSVFSEAWK	1	Unmodified	1553.7726	0.77257283	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.953	88.843	2	1.1781E-07	77155	160511_QHF_FH_JSI12i_3	97.911	81.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47566	3200	44772	286986	384872	384872			1	
SQSIYLQVLTDK	1	Unmodified	1393.7453	0.74529545	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	71.672	70.695	2	1.4562E-05	61934	160511_QHF_FH_JSI11i_2	93.839	81.243			1.2798	1.3826	29.003	3	3	Median	1.1955	1.0519	NaN	1	1	Median	1.504	1.8783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2798	1.3826	NaN	1	1	Median	68494000	29563000	38931000	13144000	7239900	5904200	10990000	5576800	5413400	0	0	0	44360000	16746000	27613000	47567	714	44773	286987;286988;286989;286990;286991	384873;384874;384875;384876;384877	384875			5	
SQSLPNSLDYTQTSDPGR	0	Unmodified	1964.9076	0.90756276	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	48.419	47.738	2	9.3593E-09	42456	160511_QHF_FH_JSI9i_1	137.8	112.94			0.77803	0.76908	9.2777	4	0	Median	1.0855	0.88505	NaN	1	0	Median	0.60906	0.70773	NaN	1	0	Median	0.80903	0.77047	NaN	1	0	Median	0.74821	0.76769	NaN	1	0	Median	163040000	90826000	72210000	43000000	21297000	21703000	49329000	31051000	18278000	39548000	20155000	19393000	31159000	18323000	12836000	47568	4262	44774	286992;286993;286994;286995;286996	384878;384879;384880;384881;384882;384883;384884;384885	384885			8	
SQSPAASDCSSSSSSASLPSSGR	0	Unmodified	2198.9346	0.93458215	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.926	21.423	2	4.6852E-26	18791	160511_QHF_FH_JSI12i_1	140.81	128.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47569	732	44775	286997	384886	384886			1	
SQSQLLNTLTK	1	Unmodified	1231.6772	0.67721588	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		49.829	49.089	2	0.00027465	42311	160511_QHF_FH_JSI11i_2	77.64	41.697			0.52964	0.57905	85.812	2	1	Median	NaN	NaN	NaN	0	0	Median	0.26741	0.31564	NaN	1	1	Median	1.049	1.0623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44400000	22656000	21744000	0	0	0	17023000	10708000	6315400	27377000	11949000	15429000	0	0	0	47570	3022	44776	286998;286999;287000	384887;384888;384889;384890	384889			4	
SQSSDLLER	0	Unmodified	1033.504	0.50400254	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.037	20.545	2	0.0056115	17979	160511_QHF_FH_JSI12i_1	56.81	21.454			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47571	3411	44777	287001	384891	384891			1	
SQSSDTEQQSPTSGGGK	1	Unmodified	1679.7235	0.72345039	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.9	8				3					2	3	3	3	6.3572	4.1518	2;3	8.5765E-297	3697	160511_QHF_FH_JSI10i_1	372.27	357.83			0.96821	1.0204	7.0751	11	0	Median	1.2705	1.0496	11.299	2	0	Median	0.87323	1.037	3.1957	3	0	Median	1.0914	1.0648	5.5639	3	0	Plateau	0.88184	0.94908	7.4997	3	0	Median	2800600000	1487400000	1313200000	700420000	335190000	365240000	663850000	399740000	264110000	631020000	297540000	333480000	805330000	454970000	350370000	47572	1237	44778	287002;287003;287004;287005;287006;287007;287008;287009;287010;287011;287012	384892;384893;384894;384895;384896;384897;384898;384899;384900;384901;384902;384903;384904;384905;384906;384907;384908;384909;384910;384911;384912	384902			21	
SQSSELTK	1	Unmodified	878.43453	0.434526	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.4367	6.0906	2	0.0033023	4124	160511_QHF_FH_JSI12i_1	73.573	31.998			0.69455	0.73544	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69455	0.73544	NaN	1	0	Median	205840000	120340000	85502000	0	0	0	0	0	0	0	0	0	205840000	120340000	85502000	47573	5610	44779	287013	384913	384913			1	
SQSSHSYDDSTLPLIDR	0	Unmodified	1919.8861	0.88609904	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	50.736	50.095	3	4.7586E-06	42681	160511_QHF_FH_JSI12i_3	76.526	65.582			1.0387	1.039	6.2986	5	1	Median	1.1773	0.99678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0598	1.0295	7.3258	2	0	Median	1.0149	1.089	6.6509	2	0	Median	345880000	163290000	182590000	54486000	24394000	30092000	0	0	0	162590000	72597000	89994000	128800000	66302000	62501000	47574	442	44780	287014;287015;287016;287017;287018	384914;384915;384916;384917;384918;384919;384920;384921;384922;384923	384923			10	
SQSSIVPEEEQAANK	1	Unmodified	1615.7689	0.76894402	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.199	28.281	2	0.0010142	25266	160511_QHF_FH_JSI12i_1	79.693	59.931			1.7218	1.7018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7218	1.7018	NaN	1	1	Median	26487000	4833100	21654000	14016000	0	14016000	0	0	0	0	0	0	12471000	4833100	7637900	47575	3936	44781	287019;287020	384924;384925	384924			2	
SQSSIVPEEEQAANKGEEK	2	Unmodified	2058.9706	0.97055695	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.067	26.487	3	5.7652E-08	23227	160511_QHF_FH_JSI11i_1	104.18	83.445			1.0551	1.1592	12.027	4	0	Linear	1.061	0.88406	NaN	1	0	Median	0.78485	0.92197	NaN	1	0	Median	1.0492	1.0224	NaN	1	0	Median	1.1415	1.1577	NaN	1	0	Median	399640000	212600000	187030000	77709000	31908000	45800000	93218000	53093000	40125000	99481000	60074000	39407000	129230000	67529000	61698000	47576	3936	44782	287021;287022;287023;287024	384926;384927;384928;384929	384926			4	
SQSSNDTFPTAMHIAAAIEVHEVLLPGLQK	1	Oxidation (M)	3219.6234	0.62341276	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		100.53	100.53	4	0.0029199	89500	160511_QHF_FH_JSI11i_3	34.414	32.1			0.57481	0.52122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57481	0.52122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33202000	13872000	19330000	0	0	0	0	0	0	33202000	13872000	19330000	0	0	0	47577	887	44783	287025	384930	384930		450	1	
SQSSNDTFPTAMHIAAAIEVHEVLLPGLQK	1	Unmodified	3203.6285	0.62849814	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	7.33	6.13			2						1	1		1	1	98.12	95.199	4	1.2566E-48	46648	160513_QHF_FH_JSI9Kac_6	151.73	135.46			1.1555	0.99695	20.544	3	0	Median	1.1555	0.99695	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5111	1.4161	NaN	1	0	Median	0.95306	0.98752	NaN	1	0	Median	652050000	320370000	331670000	74279000	34759000	39520000	0	0	0	118860000	46503000	72357000	458910000	239110000	219800000	47578	887	44783	287026;287027;287028	384931;384932	384931			2	
SQSSSAEQSFLFSR	0	Unmodified	1559.7216	0.72159989	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			52.448	51.508	2	0.0019335	45469	160511_QHF_FH_JSI10i_2	59.155	45.346			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47579	5720	44784	287029	384933	384933			1	
SQSSSAEQSFLFSREEADTLR	0	Unmodified	2374.1037	0.10369639	5720	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			61.545	60.636	3	0.018471	53835	160511_QHF_FH_JSI10i_2	29.766	9.6753			1.0398	1.0817	34.078	2	0	Median	0.96913	0.85008	NaN	1	0	Median	1.1157	1.3765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95333000	53194000	42139000	48646000	29518000	19128000	46687000	23677000	23011000	0	0	0	0	0	0	47580	5720	44785	287030;287031	384934;384935	384935			2	
SQSSTQPAEK	1	Unmodified	1061.4989	0.49891717	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1					2	4	1	4.6646	2.6907	2	1.0361E-06	2259	160511_QHF_FH_JSI11i_1	120.09	61.11			0.72936	0.79925	18.105	4	4	Median	NaN	NaN	NaN	0	0	Median	0.68785	0.79564	2.8632	2	2	Median	1.1698	1.1367	NaN	1	1	Median	0.74554	0.78678	NaN	1	1	Median	448470000	222390000	226090000	0	0	0	136790000	76918000	59873000	168420000	69964000	98459000	143260000	75505000	67755000	47581	4206	44786	287032;287033;287034;287035;287036;287037;287038	384936;384937;384938;384939;384940;384941;384942	384936			7	
SQSTKLSVVHEK	2	Acetyl (K)	1383.7358	0.73579339	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	15	0								3			1	1	1	34.67	25.093	3	0.012785	13825	160513_QHF_FH_JSI12Kac_5	37.613	28.793			0.53403	0.52622	27.553	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.76731	0.91127	NaN	1	0	Median	0.53403	0.52622	NaN	1	0	Median	0.64209	0.72076	NaN	1	0	Median	13933000	8832500	5100600	0	0	0	3633900	2349200	1284700	5937100	3904500	2032600	4362200	2578800	1783400	47582	1181	44787	287039;287040;287041	384943	384943	1039		1	
SQSTTFNPDDMSEPEFK	1	Unmodified	1958.8204	0.82038724	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.823	60.106	2	2.5269E-104	54525	160511_QHF_FH_JSI11i_1	229.32	199.52			0.88898	0.7876	8.8088	3	0	Median	0.97556	0.7876	NaN	1	0	Median	0.68618	0.78733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88898	0.91726	NaN	1	0	Median	86924000	45682000	41241000	26551000	11826000	14725000	29517000	16339000	13179000	0	0	0	30855000	17517000	13338000	47583	3353	44788	287042;287043;287044;287045	384944;384945;384946;384947;384948;384949	384944			6	
SQSVFSGNPSIWLK	1	Unmodified	1548.7936	0.79364262	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	2	3	2	79.272	78.579	2	4.5662E-15	68170	160511_QHF_FH_JSI12i_3	165.58	146.84			1.141	1.0887	18.41	10	6	Median	1.286	1.0956	18.165	3	3	Plateau	1.0817	1.3096	24.217	2	1	Median	1.183	1.0813	7.6675	3	2	Median	0.94889	0.9885	15.475	2	0	Median	600530000	286310000	314220000	83995000	34318000	49677000	90717000	48550000	42166000	258210000	119230000	138980000	167610000	84215000	83395000	47584	3074	44789	287046;287047;287048;287049;287050;287051;287052;287053;287054;287055	384950;384951;384952;384953;384954;384955;384956;384957;384958;384959;384960;384961;384962;384963;384964	384964			15	
SQSWYNVLSPTYK	1	Unmodified	1571.762	0.76200815	2815	Q3KR37	GRAMD1B	GRAM domain-containing protein 1B	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			72.273	71.5	2	0.0011611	63561	160511_QHF_FH_JSI10i_2	62.338	41.339			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47585	2815	44790	287056	384965	384965			1	
SQTAMSETYDFLFK	1	Acetyl (Protein N-term)	1708.7654	0.76543854	1173	P20338	RAB4A	Ras-related protein Rab-4A	yes	yes	0	1	0	0			By MS/MS		1	0	1											1		102.02	101.95	2	0.0049373	92673	160511_QHF_FH_JSI11i_1	49.632	42.658			0.86244	0.83647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86244	0.83647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59750000	30938000	28812000	0	0	0	0	0	0	59750000	30938000	28812000	0	0	0	47586	1173	44791	287057	384966	384966			0	
SQTDQLVLIFAGK	1	Unmodified	1418.7769	0.77692993	5299	Q9UHD9	UBQLN2	Ubiquilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.69	2	4						1		1	1	3	2	87.047	85.052	2	1.0689E-15	74769	160511_QHF_FH_JSI12i_2	165.66	148.99			0.96684	0.98187	12.849	7	0	Median	1.5831	1.3027	NaN	1	0	Median	0.70831	0.87905	NaN	1	0	Median	1.0109	0.99445	4.2529	3	0	Plateau	0.89086	0.94581	5.2913	2	0	Median	164170000	85860000	78312000	25991000	11281000	14710000	21824000	12746000	9078200	63871000	32604000	31267000	52485000	29229000	23257000	47587	5299	44792	287058;287059;287060;287061;287062;287063;287064	384967;384968;384969;384970;384971;384972;384973;384974;384975	384968			9	
SQTEAVTFLANHDDSR	0	Unmodified	1789.8231	0.82310485	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	43.399	42.692	2;3	4.1968E-22	36490	160511_QHF_FH_JSI12i_3	109.42	103.76			0.80605	0.89006	8.2637	4	1	Median	NaN	NaN	NaN	0	0	Median	0.75201	0.91493	NaN	1	1	Median	0.89374	0.87905	13.716	2	0	Median	0.76862	0.86586	NaN	1	0	Median	570690000	329960000	240730000	0	0	0	194810000	119510000	75301000	261040000	143090000	117950000	114830000	67352000	47481000	47588	5534	44793	287065;287066;287067;287068;287069;287070	384976;384977;384978;384979;384980;384981;384982	384982			7	
SQTGVGELTTQNTR	0	Unmodified	1490.7325	0.73249893	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.812	24.252	2	0.00055088	21504	160511_QHF_FH_JSI12i_1	85.845	48.654			1.042	0.98727	16.034	4	2	Median	1.2634	1.0444	NaN	1	1	Median	0.80868	0.93326	NaN	1	1	Median	1.3894	1.3003	NaN	1	0	Median	0.85935	0.91833	NaN	1	0	Median	131030000	69433000	61599000	33612000	14177000	19435000	35755000	21018000	14737000	24341000	11208000	13133000	37324000	23030000	14294000	47589	3962	44794	287071;287072;287073;287074	384983;384984;384985;384986	384984			4	
SQTGWPR	0	Unmodified	830.4035	0.40350064	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	15.448	14.656	2	0.011879	12230	160511_QHF_FH_JSI10i_2	76.035	49.926			0.97059	1.1417	2.2596	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9443	1.1601	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99761	1.1236	NaN	1	0	Median	195200000	97696000	97500000	0	0	0	82772000	43419000	39353000	0	0	0	112420000	54277000	58147000	47590	379	44795	287075;287076	384987;384988	384988			2	
SQTINNEAFSGIK	1	Unmodified	1407.6994	0.69940789	4767	Q9H7E2	TDRD3	Tudor domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.9	42.43	2	9.2959E-06	38102	160511_QHF_FH_JSI10i_1	132.5	121.35			0.44837	0.44408	13.932	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.42746	0.51051	NaN	1	1	Median	0.46746	0.44408	NaN	1	1	Median	0.36432	0.38636	NaN	1	1	Median	190120000	129430000	60689000	0	0	0	67678000	44417000	23261000	62509000	38949000	23560000	59929000	46060000	13869000	47591	4767	44796	287077;287078;287079	384989;384990;384991	384991			3	
SQTSQNSHFAVLWYVHK	1	Unmodified	2030.9963	0.99625861	469	O75054	IGSF3	Immunoglobulin superfamily member 3	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	68.785	58.974	3	0.0010379	30913	160513_QHF_FH_JSI12Kac_6	62.378	53.559			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47592	469	44797	287080	384992	384992			1	
SQTSSIPQKPQTNK	2	Unmodified	1542.8002	0.80018457	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		1	3							1	1	1	1	12.539	12.203	3	9.597E-05	9671	160511_QHF_FH_JSI11i_3	87.148	67.408			0.94615	0.84342	10.366	4	0	Linear	1.0934	0.95453	NaN	1	0	Median	0.93898	1.1064	NaN	1	0	Median	0.95339	0.88667	NaN	1	0	Median	0.86453	0.88932	NaN	1	0	Median	234300000	133400000	100900000	45672000	23100000	22571000	26147000	14479000	11669000	102830000	65069000	37758000	59655000	30753000	28902000	47593	2505	44798	287081;287082;287083;287084	384993;384994;384995;384996;384997	384993			5	
SQTTGFPSLITIFSAPNYLDVYNNK	1	Unmodified	2789.3912	0.3912112	2264	Q08209;P16298	PPP3CA;PPP3CB	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform	yes	no	0	0	0	0			By MS/MS	By MS/MS	2.25	0.829	1	1	2									2	2	102.43	102.37	3	1.8585E-16	91613	160511_QHF_FH_JSI11i_3	113.6	110.78			1.1729	1.1644	6.176	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2777	1.2275	4.581	2	0	Median	1.0729	1.1189	2.752	2	0	Median	432740000	192930000	239820000	0	0	0	0	0	0	316220000	142430000	173790000	116530000	50499000	66028000	47594	2264	44799	287085;287086;287087;287088	384998;384999;385000	384998			3	
SQTTTERDSDTDVEEEELPVENR	0	Unmodified	2678.1791	0.17910576	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.061	39.559	3	2.3094E-08	35408	160511_QHF_FH_JSI10i_1	97.509	89.797			0.81551	0.91343	2.6939	2	1	Median	NaN	NaN	NaN	0	0	Median	0.78795	0.931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84404	0.89619	NaN	1	0	Median	85273000	47557000	37715000	0	0	0	45952000	27271000	18681000	0	0	0	39321000	20286000	19035000	47595	2557	44800	287089;287090;287091	385001;385002;385003	385003			3	
SQTVLNQLR	0	Unmodified	1057.588	0.58800695	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2	0		3								1	1	1		33.636	32.838	2	0.040627	28618	160511_QHF_FH_JSI9i_2	58.433	37.486			0.98967	1.1688	15.587	3	0	Median	1.5505	1.3443	NaN	1	0	Median	0.94131	1.1688	NaN	1	0	Median	0.98967	0.98477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103120000	46108000	57008000	30193000	11504000	18689000	29715000	15157000	14557000	43208000	19446000	23762000	0	0	0	47596	4751	44801	287092;287093;287094	385004	385004			0	
SQTYESDGK	1	Unmodified	1013.4302	0.4301689	2416	Q13443	ADAM9	Disintegrin and metalloproteinase domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.6024	5.2563	2	0.00068309	3262	160511_QHF_FH_JSI12i_1	80.755	44.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47597	2416	44802	287095	385005	385005			1	
SQVAELNDDDKDDEIVFK	2	Unmodified	2078.9644	0.96440894	4547	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	57.502	56.844	3	0.013747	51742	160511_QHF_FH_JSI12i_1	41.53	28.209			0.74289	0.76167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74289	0.76167	NaN	1	1	Median	33921000	19156000	14765000	0	0	0	0	0	0	0	0	0	33921000	19156000	14765000	47598	4547	44803	287096	385006	385006			1	
SQVDAQLLTVQK	1	Unmodified	1328.73	0.72997974	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	49.597	48.917	2	4.2908E-05	44517	160511_QHF_FH_JSI12i_1	116.54	85.975			0.98717	0.95666	17.142	4	2	Median	0.95905	0.78806	NaN	1	1	Median	0.77749	0.92646	NaN	1	1	Median	1.0161	0.98786	NaN	1	0	Median	1.1665	1.1929	NaN	1	0	Median	302970000	145360000	157610000	71789000	34430000	37359000	75485000	45676000	29808000	87248000	38683000	48565000	68448000	26566000	41883000	47599	482	44804	287097;287098;287099;287100;287101	385007;385008;385009;385010;385011;385012	385008			6	
SQVDHVIWPDGK	1	Unmodified	1379.6834	0.68336389	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.09		8						1		2	2	3	2	44.657	42.361	2;3	6.2835E-07	36191	160511_QHF_FH_JSI12i_2	106.01	95.178			1.2675	1.4276	20.393	7	4	Median	1.4174	1.193	NaN	1	0	Median	1.0298	1.2608	22.641	2	2	Median	1.6703	1.5853	24.241	3	2	Median	1.2675	1.4276	NaN	1	0	Median	696790000	322920000	373870000	92862000	36708000	56154000	173300000	85915000	87384000	315720000	145930000	169800000	114910000	54372000	60535000	47600	389	44805	287102;287103;287104;287105;287106;287107;287108;287109;287110	385013;385014;385015;385016;385017;385018;385019;385020;385021	385014			9	
SQVEEELFSVR	0	Unmodified	1321.6514	0.65139506	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.028	61.119	2	0.0058132	54209	160511_QHF_FH_JSI10i_2	89.171	67.723			1.0718	0.88221	16.484	4	0	Linear	1.0033	0.85905	NaN	1	0	Median	0.74973	0.906	NaN	1	0	Median	1.0966	1.1328	NaN	1	0	Median	0.69351	0.76467	NaN	1	0	Median	313370000	172370000	141000000	85726000	44839000	40887000	75424000	42404000	33020000	92823000	52612000	40211000	59401000	32518000	26883000	47601	2636	44806	287111;287112;287113;287114	385022;385023;385024;385025	385025			0	
SQVEPADYK	1	Unmodified	1035.4873	0.48728985	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.6	4.8	1					4					2	2	1	20.748	15.186	2	9.7524E-06	13094	160511_QHF_FH_JSI10i_1	128.36	82.643			1.1928	1.3588	13.629	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1771	1.3588	2.3521	2	1	Median	1.7085	1.7342	NaN	1	1	Median	1.1726	1.2766	NaN	1	0	Median	249660000	113970000	135690000	0	0	0	239510000	109970000	129540000	6172800	2018800	4154000	3973200	1978900	1994300	47602	1636	44807	287115;287116;287117;287118;287119	385026;385027;385028;385029;385030;385031	385028			6	
SQVEPADYKADEDPALFQSVK	2	Unmodified	2336.1172	0.11722119	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	61.032	60.541	3	4.7221E-06	54684	160511_QHF_FH_JSI10i_1	70.345	51.807			0.95004	0.93728	24.051	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83577	0.98144	NaN	1	0	Median	0.95004	0.92108	NaN	1	0	Median	1.3738	1.4369	NaN	1	0	Median	963090000	497850000	465240000	0	0	0	357390000	212340000	145050000	367420000	208440000	158980000	238280000	77064000	161220000	47603	1636	44808	287120;287121;287122	385032;385033;385034	385034			2	
SQVEQQQLITVEK	1	Unmodified	1528.8097	0.80968662	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		41.951	41.579	2	2.3641E-15	37495	160511_QHF_FH_JSI11i_1	161.1	126.57			1.2128	1.2751	12.83	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0282	1.1645	NaN	1	1	Median	1.4304	1.3962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75525000	32426000	43099000	0	0	0	31991000	13229000	18761000	43534000	19196000	24338000	0	0	0	47604	3133	44809	287123;287124;287125	385035;385036;385037	385035			3	
SQVFSTAADGQTQVEIK	1	Unmodified	1807.8952	0.89520716	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.782	14	4	4							5	8	4	5	51.968	51.148	2;3	4.7265E-267	46620	160511_QHF_FH_JSI11i_1	365.28	330.58			0.9264	0.91119	22.216	18	7	Median	1.147	0.92536	21.1	5	3	Median	0.69977	0.83328	23.413	6	2	Median	1.0318	1.0073	4.5831	3	1	Plateau	0.84773	0.91415	14.65	4	1	Median	6005400000	3028300000	2977100000	1956600000	923380000	1033200000	1373000000	829050000	543970000	1210000000	563520000	646530000	1465800000	712380000	753440000	47605	1480	44810	287126;287127;287128;287129;287130;287131;287132;287133;287134;287135;287136;287137;287138;287139;287140;287141;287142;287143;287144;287145;287146;287147	385038;385039;385040;385041;385042;385043;385044;385045;385046;385047;385048;385049;385050;385051;385052;385053;385054;385055;385056;385057;385058;385059;385060;385061;385062;385063;385064;385065;385066;385067;385068;385069;385070;385071;385072;385073;385074;385075;385076;385077;385078;385079;385080	385042			42	
SQVGAIIITPTR	0	Unmodified	1254.7296	0.7295858	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	4.84		2				1	3	5		2	4	2	3	61.855	53.164	2	1.7714E-13	28918	160513_QHF_FH_JSI10Kac_4	132.76	114.9			0.92505	0.97394	10.602	10	2	Median	1.0421	0.8874	9.3703	2	0	Median	0.85432	0.99065	9.3817	4	1	Median	1.1011	1.084	4.7886	2	0	Median	0.85539	0.91933	11.953	2	1	Median	95249000	51608000	43642000	32999000	16829000	16170000	40309000	24427000	15882000	18197000	8354800	9841700	3744800	1996600	1748200	47606	3670	44811	287148;287149;287150;287151;287152;287153;287154;287155;287156;287157;287158	385081;385082;385083;385084;385085;385086;385087;385088;385089;385090;385091;385092;385093;385094	385084			14	
SQVISNAK	1	Unmodified	845.46068	0.46068117	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	5.99	4	3	1			3	4			3	4	4	4	9.0235	5.4173	2	0.00079555	3853	160513_QHF_FH_JSI12Kac_3	105.52	51.363			1.0054	1.0085	17.435	14	1	Median	1.0412	0.84283	3.0164	3	0	Median	0.8265	1.0032	18.301	4	0	Median	1.0779	1.0507	15.414	3	1	Median	1.041	1.116	16.754	4	0	Median	4705100000	2647700000	2057400000	957590000	545940000	411650000	1260700000	810310000	450440000	1333800000	703770000	630060000	1153000000	587700000	565280000	47607	1417	44812	287159;287160;287161;287162;287163;287164;287165;287166;287167;287168;287169;287170;287171;287172;287173	385095;385096;385097;385098;385099;385100;385101;385102;385103;385104;385105;385106;385107;385108	385106			14	
SQVLDYLSYAVFQLGDLHR	0	Unmodified	2223.1324	0.13241774	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.666	89.474	3	1.71E-45	48393	160513_QHF_FH_JSI12Kac_6	187.47	162.27			0.80819	0.87003	53.859	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68997	0.82423	NaN	1	0	Median	2.298	2.1499	NaN	1	0	Median	0.80819	0.87003	NaN	1	0	Median	762190000	385700000	376490000	0	0	0	421730000	244510000	177230000	193350000	58611000	134740000	147110000	82584000	64528000	47608	294	44813	287174;287175;287176;287177	385109;385110;385111;385112;385113	385111			5	
SQVLFSVTR	0	Unmodified	1035.5713	0.57129425	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		57.226	47.5	2	0.035496	25717	160513_QHF_FH_JSI11Kac_6	53.327	20.487			1.0429	1.0306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0429	1.0306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15995000	8062400	7933000	0	0	0	0	0	0	15995000	8062400	7933000	0	0	0	47609	3146	44814	287178	385114	385114			1	
SQVPNEK	1	Unmodified	800.40283	0.40283194	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.366	3.0682	2	0.0010762	3550	160511_QHF_FH_JSI11i_1	124.83	62.12			1.0225	1.006	9.5971	7	0	Median	1.0232	0.84366	NaN	1	0	Median	0.81728	0.95895	8.1722	2	0	Median	1.0345	1.0076	0.21855	2	0	Median	0.93713	0.99599	15.722	2	0	Median	882240000	455690000	426550000	188720000	90900000	97816000	242960000	129760000	113200000	244150000	126070000	118080000	206420000	108950000	97461000	47610	4494	44815	287179;287180;287181;287182;287183;287184;287185	385115;385116;385117;385118;385119;385120;385121;385122;385123;385124	385115			10	
SQVVAGTNYFIK	1	Unmodified	1325.698	0.69795133	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.37	6.11	4	4	4		1	5	4	4	4	5	8	9	8	61.47	55.378	2	6.3268E-42	48270	160511_QHF_FH_JSI9i_2	206.97	182.94			0.9546	0.99425	24.074	28	2	Median	1.0739	0.88021	8.7184	5	0	Median	0.90401	1.0568	5.7527	7	0	Median	0.92551	0.89924	23.961	8	1	Median	1.0159	1.0996	33.605	8	1	Median	13052000000	6492400000	6559700000	2847100000	1311800000	1535300000	3353300000	1850800000	1502500000	4039300000	1912800000	2126400000	2812400000	1417000000	1395400000	47611	804	44816	287186;287187;287188;287189;287190;287191;287192;287193;287194;287195;287196;287197;287198;287199;287200;287201;287202;287203;287204;287205;287206;287207;287208;287209;287210;287211;287212;287213;287214;287215	385125;385126;385127;385128;385129;385130;385131;385132;385133;385134;385135;385136;385137;385138;385139;385140;385141;385142;385143;385144;385145;385146;385147;385148;385149;385150;385151;385152;385153;385154;385155;385156;385157;385158;385159;385160;385161;385162;385163;385164;385165;385166;385167;385168;385169;385170;385171;385172;385173;385174;385175;385176;385177;385178;385179;385180;385181;385182;385183;385184;385185	385161			60	
SQVVFSAEELIYPDR	0	Unmodified	1751.873	0.87301516	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	86.442	85.415	2	0.00050933	73908	160511_QHF_FH_JSI12i_2	90.412	58.083			1.6049	1.8099	45.748	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6049	1.8099	45.748	2	2	Median	25094000	9222400	15871000	0	0	0	0	0	0	0	0	0	25094000	9222400	15871000	47612	2194	44817	287216;287217	385186;385187	385187			2	
SQVVFSAEELIYPDRR	0	Unmodified	1907.9741	0.97412619	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	76.351	76.167	3	2.267E-05	66077	160511_QHF_FH_JSI12i_3	75.574	67.184			1.1419	1.0913	10.686	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1419	1.0913	NaN	1	0	Median	0.96276	0.96379	11.2	2	2	Median	92361000	42790000	49571000	0	0	0	0	0	0	26132000	10519000	15613000	66229000	32270000	33958000	47613	2194	44818	287218;287219;287220	385188;385189;385190;385191	385190			4	
SQVVIPILQWAIASTTLDHR	0	Unmodified	2247.2376	0.23755152	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.907	89.827	3	4.2733E-26	50742	160513_QHF_FH_JSI11Kac_6	156.29	133.42			1.1838	1.0075	11.623	3	0	Median	1.1838	1.0075	NaN	1	0	Median	0.81708	0.97482	NaN	1	0	Median	1.2898	1.2096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	595740000	318670000	277070000	98509000	50299000	48210000	321170000	188910000	132250000	176070000	79455000	96611000	0	0	0	47614	5666	44819	287221;287222;287223	385192;385193;385194;385195	385192			4	
SQWLDVK	1	Unmodified	874.45487	0.45486751	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.39	1	3					2	2		1	2	2	3	51.046	40.552	2	0.0033445	35891	160511_QHF_FH_JSI10i_2	95.741	56.923			0.99931	0.96259	9.0269	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0138	1.192	NaN	1	0	Median	0.9798	0.96766	NaN	1	0	Median	1.0093	1.094	4.8651	2	0	Median	13054000	6681700	6372000	0	0	0	2289200	1032300	1257000	4716800	2462300	2254400	6047700	3187100	2860600	47615	1188	44820	287224;287225;287226;287227;287228;287229;287230;287231	385196;385197;385198;385199;385200;385201	385201			6	
SQWSPALTISK	1	Unmodified	1216.6452	0.64518747	1934	P61077;P62837	UBE2D3;UBE2D2	Ubiquitin-conjugating enzyme E2 D3;Ubiquitin-conjugating enzyme E2 D2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.51	4	5	4					3	4	5	5	5	5	59.854	55.851	2	6.0326E-18	49318	160511_QHF_FH_JSI10i_2	166.97	134.65			1.0352	1.0031	20.851	20	3	Median	1.0913	0.92856	23.788	5	1	Median	0.84809	0.99411	16.229	5	1	Median	1.0459	1.0769	13.663	5	0	Median	1.0466	1.0981	29.159	5	1	Median	3788800000	1772000000	2016900000	485770000	187230000	298540000	769500000	408840000	360660000	1102500000	491220000	611260000	1431100000	684690000	746400000	47616	1934	44821	287232;287233;287234;287235;287236;287237;287238;287239;287240;287241;287242;287243;287244;287245;287246;287247;287248;287249;287250;287251	385202;385203;385204;385205;385206;385207;385208;385209;385210;385211;385212;385213;385214;385215;385216;385217;385218;385219;385220;385221;385222;385223;385224;385225;385226;385227;385228;385229;385230;385231;385232	385225			31	
SQWVAPSSVVLHDEGQNEEDVEK	1	Unmodified	2581.1932	0.19323968	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.719	59.451	3	0.00013796	51177	160511_QHF_FH_JSI12i_3	52.483	42.766			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47617	5523	44822	287252	385233	385233			1	
SQWYELQQLDSK	1	Acetyl (Protein N-term)	1565.7362	0.73618733	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	82.998	82.533	2	2.5626E-07	75232	160511_QHF_FH_JSI11i_1	103.08	88.664			1.2807	1.1988	118.24	4	1	Median	1.1706	1.0076	NaN	1	0	Median	0.81017	0.96485	NaN	1	0	Median	11.937	11.562	NaN	1	1	Median	1.4011	1.4264	NaN	1	0	Median	112880000	45281000	67599000	37235000	13556000	23678000	37102000	19499000	17603000	12933000	1661300	11271000	25611000	10565000	15046000	47618	1528	44823	287253;287254;287255;287256;287257	385234;385235;385236;385237;385238;385239;385240;385241	385235			8	
SQYDYILPQVSFTAVGYHK	1	Unmodified	2215.095	0.094969603	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		5							5	2	2	3	3	86.668	82.105	3	1.2222E-13	43020	160513_QHF_FH_JSI10Kac_6	130.11	121.29			0.94801	0.91799	15.953	10	5	Median	1.1092	0.93848	1.6839	2	1	Median	0.6968	0.8484	9.7119	2	0	Median	0.87877	0.87876	6.8623	3	2	Plateau	0.96733	1.0704	31.368	3	2	Median	733410000	368510000	364900000	164060000	79671000	84394000	190390000	102660000	87735000	253450000	127840000	125610000	125510000	58347000	67166000	47619	2638;2895	44824	287258;287259;287260;287261;287262;287263;287264;287265;287266;287267	385242;385243;385244;385245;385246;385247;385248;385249;385250;385251;385252;385253;385254	385254			13	
SQYEQLAEQNRK	1	Unmodified	1492.727	0.72701962	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	1	By MS/MS				2	0		2								2				18.299	17.442	2;3	5.8989E-05	14694	160511_QHF_FH_JSI9i_2	142.91	122.05		+	0.37775	0.32151	NaN	1	1	Median	0.37775	0.32151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92995000	70034000	22961000	92995000	70034000	22961000	0	0	0	0	0	0	0	0	0	47620	56	44825	287268;287269	385255;385256	385255			2	
SQYNFIADVVEK	1	Unmodified	1411.6983	0.69834526	336	O43464	HTRA2	Serine protease HTRA2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.396	74.135	2	4.0608E-05	63928	160511_QHF_FH_JSI12i_2	102.62	87.648			0.96116	1.0511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96116	1.0511	NaN	1	0	Median	33282000	15127000	18154000	0	0	0	0	0	0	0	0	0	33282000	15127000	18154000	47621	336	44826	287270	385257;385258	385257			2	
SQYTTGR	0	Unmodified	811.38243	0.38243085	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3.12	4.51	4	3						1		3	2	1	2	5.1284	4.7521	2	0.017769	2602	160511_QHF_FH_JSI12i_2	60.972	38.043			0.80439	0.94625	9.169	7	0	Median	1.1865	0.9893	4.541	2	0	Median	0.75233	0.89753	7.4752	2	0	Median	0.80335	0.77834	NaN	1	0	Median	0.85808	0.92665	5.8492	2	0	Median	1006200000	521060000	485150000	182950000	85957000	96993000	330340000	181140000	149210000	162040000	83470000	78573000	330870000	170490000	160380000	47622	1411	44827	287271;287272;287273;287274;287275;287276;287277;287278	385259;385260;385261;385262;385263;385264	385259			6	
SRAEAESMYQIK	1	Oxidation (M)	1427.6715	0.67147858	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.7	6.28		2	7					7	4	4	6	6	4	22.425	17.444	2;3	1.4402E-06	21018	160511_QHF_FH_JSI11i_3	137.4	109.65		+	1.0224	0.9859	31.82	15	1	Median	1.1963	1.0071	10.267	3	0	Plateau	1.0389	1.1771	52.302	5	1	Median	1.0224	0.99907	11.02	5	0	Median	0.86478	0.94057	6.6567	2	0	Median	1355100000	594750000	760300000	18627000	7906700	10721000	365230000	165770000	199460000	963410000	417320000	546090000	7785700	3747600	4038100	47623	51	44828	287279;287280;287281;287282;287283;287284;287285;287286;287287;287288;287289;287290;287291;287292;287293;287294;287295;287296;287297;287298	385265;385266;385267;385268;385269;385270;385271;385272;385273;385274;385275;385276;385277;385278;385279;385280;385281;385282;385283;385284;385285;385286	385266		15	22	
SRAEAESMYQIK	1	Unmodified	1411.6766	0.67656396	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.02		8	8					4		5	5	5	5	27.714	25.168	2;3	2.2883E-10	20524	160511_QHF_FH_JSI12i_3	151.98	131.11		+	0.88803	0.93688	19.873	20	2	Median	1.2449	1.0315	27.687	5	1	Median	0.79602	0.93136	14.939	5	1	Median	0.992	0.93626	19.701	5	0	Median	0.86632	0.89426	9.7473	5	0	Median	10050000000	4998000000	5052300000	1699900000	845840000	854020000	2914800000	1499900000	1414900000	4213000000	2038200000	2174700000	1222600000	614010000	608620000	47624	51	44828	287299;287300;287301;287302;287303;287304;287305;287306;287307;287308;287309;287310;287311;287312;287313;287314;287315;287316;287317;287318	385287;385288;385289;385290;385291;385292;385293;385294;385295;385296;385297;385298;385299;385300;385301;385302;385303;385304;385305;385306;385307;385308;385309;385310;385311;385312;385313;385314;385315;385316;385317;385318;385319;385320;385321;385322;385323;385324;385325;385326;385327;385328;385329;385330	385328			43	
SRAEDLNTR	0	Unmodified	1060.5261	0.52613497	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			6.0737	5.6269	2	0.0002315	3597	160511_QHF_FH_JSI9i_2	106.16	68.97			1.3099	1.225	10.164	3	0	Plateau	1.3921	1.225	NaN	1	0	Median	0.92075	1.0898	10.743	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	375060000	190430000	184630000	127230000	58167000	69059000	247840000	132260000	115580000	0	0	0	0	0	0	47625	5573	44829	287319;287320;287321	385331;385332	385332			2	
SRDEVTSHQK	1	Unmodified	1185.5738	0.57381344	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1	By matching	By MS/MS			2	0		2								1	1			4.6344	4.234	3	0.055679	2194	160511_QHF_FH_JSI10i_2	41.704	27.031			0.85678	0.88119	3.8576	2	0	Median	1.0593	0.90556	NaN	1	0	Median	0.69298	0.85748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146860000	78050000	68807000	87304000	42459000	44845000	59553000	35591000	23962000	0	0	0	0	0	0	47626	1360	44830	287322;287323	385333	385333			0	
SRDLLVQQASQCLSK	1	Unmodified	1731.8938	0.89376737	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			48.14	46.552	3	0.001923	38111	160511_QHF_FH_JSI9i_3	61.641	44.562			1.0702	1.2579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0702	1.2579	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17394000	14529000	2864600	8349200	8349200	0	9044500	6179900	2864600	0	0	0	0	0	0	47627	2785	44831	287324;287325	385334;385335	385335			2	
SRDSFLK	1	Unmodified	851.45012	0.45011648	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							4	3	3	1	15.646	15.002	2;3	0.0072492	10066	160511_QHF_FH_JSI9i_3	58.981	37.681			0.98038	0.95821	29.624	11	0	Median	1.1869	0.98738	18.93	4	0	Median	0.94519	1.0713	43.839	3	0	Median	0.97469	0.91681	15.496	3	0	Plateau	0.93853	1.0788	NaN	1	0	Median	4387200000	2145200000	2242100000	1886300000	819000000	1067300000	1262500000	654080000	608420000	1172500000	636550000	535940000	65990000	35550000	30441000	47628	1591	44832	287326;287327;287328;287329;287330;287331;287332;287333;287334;287335;287336	385336;385337;385338;385339;385340;385341;385342;385343;385344	385341			9	
SREAPILK	1	Unmodified	912.53927	0.53926584	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			14.066	13.221	3	0.010925	10547	160511_QHF_FH_JSI10i_3	38.303	13.528			0.72729	0.83531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72729	0.83531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60916000	31474000	29442000	0	0	0	60916000	31474000	29442000	0	0	0	0	0	0	47629	5380	44833	287337	385345	385345			1	
SREDAGDNDDTEGAIGVR	0	Unmodified	1875.8195	0.81947604	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	3	1	21.069	20.769	3	3.2034E-12	17861	160511_QHF_FH_JSI11i_1	115.34	108.11			0.85674	0.99852	6.1403	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.85674	0.99852	NaN	1	0	Median	1.1593	1.085	NaN	1	1	Median	0.94341	0.96245	NaN	1	1	Median	94794000	47413000	47381000	0	0	0	38176000	21811000	16365000	24543000	10480000	14063000	32075000	15121000	16953000	47630	4640	44834	287338;287339;287340;287341;287342	385346;385347;385348;385349;385350	385347			5	
SREDMIDIK	1	Unmodified	1105.5438	0.54375887	1175	P20340	RAB6A	Ras-related protein Rab-6A	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	27.467	27.445	3	0.004464	22837	160511_QHF_FH_JSI12i_3	48.284	34.049			2.1461	2.1209	4.2154	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2837	2.1851	NaN	1	1	Median	2.0167	2.0586	NaN	1	1	Median	429410000	124400000	305010000	0	0	0	0	0	0	180270000	53541000	126730000	249130000	70861000	178270000	47631	1175	44835	287343;287344;287345	385351;385352;385353	385353			3	
SREIFLSQPILLELEAPLK	1	Unmodified	2195.2566	0.25655562	1981;1980;1461	P62140;P36873;P62136	PPP1CB;PPP1CC;PPP1CA	Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	101.56	101.46	2;3	2.3996E-18	90587	160511_QHF_FH_JSI11i_3	161.51	145.78			0.777	0.83426	17.651	9	0	Median	1.1195	0.9318	28.937	2	0	Median	0.73541	0.83426	9.1898	3	0	Median	0.92902	0.90992	19.289	2	0	Median	0.75482	0.78511	27.728	2	0	Median	2716800000	1411200000	1305600000	475680000	214720000	260960000	1162300000	667630000	494670000	825530000	393750000	431780000	253250000	135080000	118170000	47632	1981;1461;1980	44836	287346;287347;287348;287349;287350;287351;287352;287353;287354	385354;385355;385356;385357;385358;385359;385360;385361;385362;385363	385354			10	
SRENPEEDEDQRNPAK	1	Unmodified	1912.8511	0.85111052	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2	0		3								1	2			8.2853	7.8099	3	0.00011131	5737	160511_QHF_FH_JSI9i_2	85.734	75.677			0.81351	0.8242	17.416	2	0	Median	1.0971	0.93221	NaN	1	0	Median	0.60322	0.7287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114670000	60698000	53973000	49454000	22818000	26635000	65218000	37880000	27338000	0	0	0	0	0	0	47633	1439	44837	287355;287356;287357	385364;385365;385366;385367	385365			4	
SREQMSSQPK	1	Unmodified	1176.5557	0.55572054	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		4	2							3	3			5.1912	4.7615	2;3	9.1567E-05	2639	160511_QHF_FH_JSI9i_2	101.97	73.575			0.98257	0.99811	28.073	6	1	Median	1.3509	1.1518	11.446	3	0	Median	0.73859	0.88805	14.689	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	645380000	306400000	338970000	373960000	146820000	227130000	271420000	159580000	111840000	0	0	0	0	0	0	47634	3042	44838	287358;287359;287360;287361;287362;287363	385368;385369;385370;385371;385372;385373;385374	385370			7	
SREQSSEAAETGVSENEENPVR	0	Unmodified	2404.0739	0.073852823	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		3								1	2			24.16	23.234	3	9.1433E-08	19782	160511_QHF_FH_JSI9i_2	87.326	84.038			0.93019	1.1349	13.834	3	2	Median	1.396	1.2183	NaN	1	0	Median	0.84366	1.0289	13.868	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111690000	58910000	52781000	36956000	14916000	22041000	74735000	43994000	30741000	0	0	0	0	0	0	47635	2789	44839	287364;287365;287366	385375;385376;385377	385375			3	
SREWDMEALR	0	Unmodified	1291.5979	0.5979197	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.67	0.471		2	4							2	3	1		43.188	42.072	2;3	2.8079E-05	35422	160511_QHF_FH_JSI10i_3	76.332	68.445			0.8402	0.92283	20.195	6	1	Median	1.2209	1.016	33.818	2	0	Median	0.84517	1.0253	8.3283	3	1	Plateau	0.791	0.73119	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	223880000	112990000	110890000	61031000	29158000	31873000	134210000	71076000	63139000	28634000	12754000	15881000	0	0	0	47636	2252	44840	287367;287368;287369;287370;287371;287372	385378;385379;385380;385381;385382;385383;385384;385385	385380			8	
SREYQLNDSASYYLNDLDR	0	Unmodified	2321.056	0.056017914	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		68.454	67.704	3	4.4056E-08	59774	160511_QHF_FH_JSI9i_2	94.45	90.498			1.083	1.1251	10.4	5	0	Median	1.4212	1.2338	NaN	1	0	Median	0.86938	1.0189	12.644	2	0	Median	1.1491	1.1378	1.5831	2	0	Median	NaN	NaN	NaN	0	0	Median	425290000	200810000	224480000	78286000	31059000	47227000	153550000	89835000	63714000	193450000	79914000	113540000	0	0	0	47637	915	44841	287373;287374;287375;287376;287377	385386;385387;385388	385388			1	
SRFTDDDK	1	Unmodified	982.43559	0.43558863	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.45	0.498		6	5							4	4	3		6.2015	5.8272	2;3	0.0015156	3866	160511_QHF_FH_JSI9i_3	66.056	53.82			0.98068	1.0119	15.669	11	0	Median	1.1125	0.93847	11.441	4	0	Median	0.95352	1.1258	6.3121	4	0	Median	0.8694	0.8025	23.337	3	0	Median	NaN	NaN	NaN	0	0	Median	1536800000	784360000	752440000	837370000	420310000	417060000	481690000	252350000	229340000	217740000	111700000	106040000	0	0	0	47638	1773	44842	287378;287379;287380;287381;287382;287383;287384;287385;287386;287387;287388	385389;385390;385391;385392;385393;385394;385395;385396;385397;385398;385399;385400	385397			12	
SRFWYFVSQLK	1	Unmodified	1459.7612	0.76122028	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	80.913	73.315	2;3	2.0435E-18	39424	160513_QHF_FH_JSI9Kac_6	169.52	126.77			1.1262	1.2044	12.689	5	1	Median	1.1611	0.98932	3.75	2	0	Median	1.0464	1.2517	5.1408	2	0	Median	NaN	NaN	NaN	0	0	Median	1.131	1.2044	NaN	1	1	Median	2817000000	1083500000	1733500000	1896700000	651460000	1245300000	854780000	397780000	457000000	0	0	0	65484000	34269000	31215000	47639	2190	44843	287389;287390;287391;287392;287393	385401;385402;385403;385404;385405;385406;385407;385408;385409	385402			9	
SRGALGSIALLGLVGTTVCSAFQHLGWVK	1	Unmodified	2997.6222	0.62223097	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.404	93.684	4	0.00039904	55021	160513_QHF_FH_JSI10Kac_6	66.511	49.01			0.70247	0.80925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70247	0.80925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58187000	40967000	17220000	0	0	0	58187000	40967000	17220000	0	0	0	0	0	0	47640	214	44844	287394	385410	385410			1	
SRGDSFTWQVTLEGR	0	Unmodified	1737.8434	0.84344636	3374	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		24.793	24.44	2	0.0087146	20381	160511_QHF_FH_JSI11i_2	63.408	39.422			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47641	3374	44845	287395	385411	385411			1	
SRGFAFVTFESPADAK	1	Unmodified	1728.8471	0.84713476	1474	P38159;Q96E39;O75526;Q8N7X1	RBMX;RBMXL1;RBMXL2;RBMXL3	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	yes	no	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			73.735	65.757	3	0.00017099	35084	160513_QHF_FH_JSI9Kac_6	79.97	69.631			1.2402	1.239	0.94108	2	0	Median	1.4098	1.2308	NaN	1	0	Median	1.091	1.2473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119910000	50810000	69105000	35664000	14968000	20696000	84250000	35841000	48409000	0	0	0	0	0	0	47642	1474	44846	287396;287397	385412;385413	385413			2	
SRGFGFILFK	1	Unmodified	1170.655	0.6549643	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	78.497	71.149	3	0.0030697	38176	160513_QHF_FH_JSI9Kac_6	48.741	37.911			0.93751	0.93945	19.558	2	0	Median	0.96068	0.81811	NaN	1	0	Median	0.9149	1.0788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57980000	31784000	26196000	33097000	17516000	15581000	24883000	14268000	10615000	0	0	0	0	0	0	47643	4308	44847	287398;287399;287400	385414;385415;385416	385414			3	
SRGFGFVLFK	1	Unmodified	1156.6393	0.63931423	2488;230	Q14103;O14979	HNRNPD;HNRNPDL	Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	76.333	68.194	3	0.00051597	37544	160513_QHF_FH_JSI10Kac_6	68.132	61.159			1.1546	0.97751	31.32	3	0	Median	1.1546	0.97751	NaN	1	0	Median	1.2666	1.4801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74306	0.80108	NaN	1	0	Median	283340000	131790000	151550000	142780000	66838000	75944000	117610000	50830000	66778000	0	0	0	22955000	14127000	8828100	47644	2488;230	44848	287401;287402;287403	385417;385418;385419;385420;385421;385422	385421			6	
SRGGGEGNVDETGNNPSVSLK	1	Unmodified	2072.9723	0.97228828	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			26.611	25.319	3	2.4537E-05	20942	160511_QHF_FH_JSI10i_3	72.145	63.645			0.45269	0.50721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45269	0.50721	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21355000	15294000	6060500	0	0	0	21355000	15294000	6060500	0	0	0	0	0	0	47645	1581	44849	287404	385423	385423			1	
SRGVEAAR	0	Unmodified	844.45151	0.45151346	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			2.5324	2.1331	2	0.028343	994	160511_QHF_FH_JSI9i_3	69.598	33.413		+	1.1493	0.90754	18.75	3	0	Plateau	1.1456	0.93299	3.9125	2	0	Median	1.0432	1.2864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298380000	132850000	165520000	236730000	100810000	135920000	61649000	32044000	29604000	0	0	0	0	0	0	47646	856;75	44850	287405;287406;287407	385424;385425;385426	385425			3	
SRIFPGDTILETGEVIPPMK	1	Unmodified	2199.1609	0.16094068	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			92.109	91.09	3	0.00053505	76045	160511_QHF_FH_JSI10i_3	54.658	45.494			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47647	645	44851	287408	385427	385427			1	
SRLDQELK	1	Unmodified	987.53491	0.53490874	1593	P46781	RPS9	40S ribosomal protein S9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.04		8	8					3	4	5	6	6	6	17.942	14.996	2;3	0.00060135	8296	160513_QHF_FH_JSI12Kac_6	91.584	43.301			0.87786	0.99827	12.966	23	1	Median	1.1853	0.99827	15.318	5	0	Median	0.85933	1.0086	6.2587	6	0	Median	0.96968	0.98334	14.194	6	1	Median	0.83356	0.90467	13.945	6	0	Median	15822000000	8040500000	7781200000	2263600000	934050000	1329600000	4948500000	2576600000	2371900000	6822800000	3474900000	3347900000	1786800000	1055000000	731810000	47648	1593	44852	287409;287410;287411;287412;287413;287414;287415;287416;287417;287418;287419;287420;287421;287422;287423;287424;287425;287426;287427;287428;287429;287430;287431	385428;385429;385430;385431;385432;385433;385434;385435;385436;385437;385438;385439;385440;385441;385442;385443;385444;385445;385446;385447;385448;385449;385450;385451;385452;385453;385454;385455;385456;385457;385458;385459;385460;385461;385462;385463;385464;385465;385466;385467;385468;385469;385470	385468			43	
SRLGDLYEEEMR	0	Unmodified	1496.6929	0.6929423	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			49.417	47.837	2;3	0.00051469	40022	160511_QHF_FH_JSI10i_3	53.754	37.221			1.0607	1.217	33.73	3	1	Median	2.5918	2.0945	NaN	1	0	Median	1.0281	1.172	5.3242	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102870000	47266000	55602000	25307000	8369800	16937000	77562000	38896000	38665000	0	0	0	0	0	0	47649	913	44853	287432;287433;287434;287435	385471;385472;385473;385474	385471			4	
SRPAPSPESIK	1	Unmodified	1167.6248	0.62478638	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			15.366	14.394	2;3	0.0039274	11481	160511_QHF_FH_JSI10i_3	55.314	48.051			0.71523	0.84745	42.076	3	1	Median	1.0539	0.86857	NaN	1	0	Median	0.50663	0.59238	50.64	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162680000	113920000	48759000	28696000	14578000	14118000	133980000	99340000	34641000	0	0	0	0	0	0	47650	3720	44854	287436;287437;287438	385475;385476	385476			2	
SRPEFMLPVHFYGK	1	Unmodified	1706.8603	0.8602824	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			4							1	2	1		73.312	72.225	4	8.8805E-05	60680	160511_QHF_FH_JSI10i_3	77.912	67.124			0.88394	1.1583	25.259	4	1	Linear	1.1534	0.95723	NaN	1	0	Median	0.59879	0.70409	27.148	2	1	Median	1.0781	1.0221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102990000	46035000	56959000	16778000	5711900	11066000	25407000	15692000	9714500	60809000	24630000	36178000	0	0	0	47651	855	44855	287439;287440;287441;287442	385477;385478;385479	385478			3	
SRPELLEYYIK	1	Unmodified	1409.7555	0.7554662	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			63.732	62.224	2;3	0.00033281	52039	160511_QHF_FH_JSI10i_3	68.44	52.901			1.0221	1.116	20.948	4	2	Median	1.3787	1.1055	36.193	2	2	Median	0.97602	1.116	2.3558	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	314770000	129980000	184780000	100600000	39700000	60898000	214170000	90284000	123890000	0	0	0	0	0	0	47652	2525	44856	287443;287444;287445;287446	385480;385481;385482;385483;385484;385485	385481			6	
SRPPFDVVIDGLNVAK	1	Unmodified	1725.9414	0.94136949	245	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				85.462	84.238	3	0.0057456	69157	160511_QHF_FH_JSI9i_3	44.807	27.729			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47653	245	44857	287447	385486	385486			1	
SRPPLQDDLLFFEK	1	Unmodified	1703.8883	0.88827129	2663	Q15390	MTFR1	Mitochondrial fission regulator 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		82.429	81.799	3	6.8762E-05	72867	160511_QHF_FH_JSI11i_3	95.347	67.699			1.3208	1.3851	11.841	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2702	1.5061	NaN	1	0	Median	1.3735	1.2739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88382000	33642000	54740000	0	0	0	15411000	7851100	7559900	72971000	25791000	47180000	0	0	0	47654	2663	44858	287448;287449	385487;385488;385489	385487			3	
SRPQGLTEAEQR	0	Unmodified	1370.6902	0.69024019	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.494	11.697	3	0.00072082	9044	160511_QHF_FH_JSI9i_3	56.139	41.24			1.2514	1.008	NaN	1	0	Median	1.2514	1.008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29663000	15189000	14474000	29663000	15189000	14474000	0	0	0	0	0	0	0	0	0	47655	2157	44860	287450	385490;385491	385490			2	
SRPSSVSPR	0	Acetyl (Protein N-term)	1013.5254	0.52540669	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	1	0	1	By MS/MS		By MS/MS		2	0		2								1		1		9.8063	9.449	2	0.0097913	7030	160511_QHF_FH_JSI11i_2	47.187	27.483			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47656	4750	44861	287451;287452	385492;385493	385493			2	
SRPVDPSVPFDSK	1	Unmodified	1429.7201	0.72014333	1211	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		37.131	37.131	2	0.036696	32522	160511_QHF_FH_JSI11i_3	69.979	43.465			0.98063	0.91103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98063	0.91103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20062000	10435000	9627100	0	0	0	0	0	0	20062000	10435000	9627100	0	0	0	47657	1211	44862	287453	385494	385494			1	
SRQELASGLPSPAATQELPVER	0	Unmodified	2335.2132	0.21318726	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			63.234	61.724	3	1.1222E-06	50562	160511_QHF_FH_JSI9i_3	75.773	64.63			1.1499	1.095	12.479	2	0	Median	1.4792	1.196	NaN	1	0	Median	0.89396	1.0025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66646000	26971000	39675000	43891000	18535000	25356000	22754000	8435700	14319000	0	0	0	0	0	0	47658	681	44863	287454;287455	385495;385496;385497	385496			3	
SRQNPQSPPQDSSVTSK	1	Unmodified	1841.8868	0.88676774	5243	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				11.06	10.349	3	0.015076	7882	160511_QHF_FH_JSI9i_3	39.338	16.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47659	5243	44864	287456	385498	385498			1	
SRSPGSPVGEGTGSPPK	1	Unmodified	1595.7903	0.79034816	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			15.142	14.185	3	1.5751E-05	11082	160511_QHF_FH_JSI9i_3	87.99	82.674			1.0759	1.0514	4.6171	2	0	Median	1.212	1.0176	NaN	1	0	Median	0.95516	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48375000	23159000	25216000	34701000	16386000	18315000	13674000	6773000	6900800	0	0	0	0	0	0	47660	1440	44865	287457;287458	385499;385500;385501;385502;385503	385502			5	
SRTGSESSQTGTSTTSSR	0	Unmodified	1815.8195	0.81947604	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.24		2	2					4	3	5	2	2	2	4.8736	-0.84979	2;3	6.6415E-12	2272	160511_QHF_FH_JSI9i_3	126.84	114.36			1.0797	1.0337	14.048	11	0	Median	1.0901	0.94486	10.706	5	0	Median	0.8266	1.0022	21.226	2	0	Median	1.1041	1.0898	4.9035	2	0	Median	1.0381	1.1831	19.095	2	0	Median	492870000	235060000	257810000	390140000	183880000	206260000	74823000	37352000	37471000	18698000	9075600	9622700	9214300	4756700	4457600	47661	1237	44866	287459;287460;287461;287462;287463;287464;287465;287466;287467;287468;287469	385504;385505;385506;385507;385508;385509;385510;385511;385512;385513;385514;385515;385516	385508			13	
SRVEQEQEAK	1	Unmodified	1202.5891	0.58912916	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.43		3	3					2		2	3	2	1	5.0304	2.1699	2;3	7.7334E-09	2641	160511_QHF_FH_JSI10i_2	135.86	122.81			1.3823	1.2862	36.806	7	2	Median	1.4626	1.2163	7.8984	2	0	Median	1.7556	2.166	56.364	2	1	Median	1.2716	1.1761	12.142	2	0	Median	1.3998	1.5419	NaN	1	1	Median	493240000	187110000	306130000	71944000	28537000	43407000	280110000	93489000	186620000	137200000	63033000	74171000	3976900	2046000	1930900	47662	4759	44867	287470;287471;287472;287473;287474;287475;287476;287477	385517;385518;385519;385520;385521;385522;385523	385522			7	
SRVTQSNFAVGYK	1	Unmodified	1455.747	0.74702678	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			38.446	29.639	3	0.003338	16010	160513_QHF_FH_JSI9Kac_6	64.224	56.5			1.0064	1.0208	0.85394	2	2	Median	1.1614	1.0147	NaN	1	1	Median	0.87201	1.027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29879000	13252000	16627000	13174000	4799500	8374400	16705000	8452700	8252300	0	0	0	0	0	0	47663	1195	44868	287478;287479	385524;385525	385524			2	
SRWDETPASQMGGSTPVLTPGK	1	Unmodified	2301.1059	0.10594499	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		58.885	57.9	3	7.4395E-16	48297	160511_QHF_FH_JSI10i_3	137.64	129.16			0.84556	0.78746	15.725	5	2	Median	1.0406	0.86688	20.221	2	1	Median	0.62078	0.7247	16.091	2	1	Median	0.84556	0.78746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	549330000	308270000	241050000	232560000	115250000	117310000	219660000	134410000	85253000	97104000	58617000	38487000	0	0	0	47664	542	44869	287480;287481;287482;287483;287484	385526;385527;385528;385529;385530;385531;385532;385533;385534;385535;385536;385537	385528			12	
SRWDETPASQMGGSTPVLTPGK	1	Oxidation (M)	2317.1009	0.10085962	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			48.622	47.033	3	2.7372E-06	38455	160511_QHF_FH_JSI9i_3	75.112	66.722			1.0447	1.0088	3.1838	2	0	Median	1.2619	1.0317	NaN	1	0	Median	0.86479	0.9863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80669000	40841000	39828000	45034000	21778000	23256000	35635000	19062000	16573000	0	0	0	0	0	0	47665	542	44869	287485;287486	385538;385539;385540;385541;385542	385541		202	5	
SRYDSIDSYLSK	1	Unmodified	1432.6834	0.68342347	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		49.025	47.457	2	0.0053942	39701	160511_QHF_FH_JSI10i_3	67.776	17.653			0.73107	0.85672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73107	0.85672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27140000	13050000	14090000	0	0	0	27140000	13050000	14090000	0	0	0	0	0	0	47666	1622	44870	287487;287488	385543;385544;385545	385545			3	
SSAAEPPPPPPPESAPSK	1	Acetyl (Protein N-term)	1783.8628	0.8628444	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.447	38.712	2	2.9422E-05	34972	160511_QHF_FH_JSI11i_1	74.987	67.377			1.1737	1.0652	56.238	2	1	Median	1.9711	1.5853	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69893	0.71567	NaN	1	0	Median	67926000	23710000	44216000	19658000	4922100	14736000	16982000	0	16982000	0	0	0	31285000	18788000	12497000	47667	403	44871	287489;287490;287491;287492	385546;385547;385548;385549;385550	385546			5	
SSAAYILFYTSLGPR	0	Unmodified	1644.8512	0.8511575	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	88.368	79.155	2;3	0.0001464	42483	160513_QHF_FH_JSI12Kac_6	82.651	67.106			1.4065	1.4579	11.743	4	4	Median	1.9132	1.6266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3299	1.274	NaN	1	1	Median	1.3863	1.4579	10.664	2	2	Median	408800000	162030000	246770000	94250000	29102000	65149000	0	0	0	125070000	48870000	76201000	189480000	84056000	105420000	47668	1501	44872	287493;287494;287495;287496	385551;385552;385553;385554	385553			4	
SSACFTLQELK	1	Unmodified	1282.6227	0.62273747	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	57.156	56.029	2	0.0014585	47990	160511_QHF_FH_JSI12i_2	76.143	53.403			1.3759	1.6141	7.4194	2	2	Median	NaN	NaN	NaN	0	0	Median	1.231	1.5316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5379	1.701	NaN	1	1	Median	52736000	23146000	29590000	0	0	0	22057000	8707600	13349000	0	0	0	30679000	14438000	16241000	47669	1578	44873	287497;287498	385555;385556	385555			2	
SSAEAQTPEDTPNK	1	Unmodified	1473.6583	0.65833093	340	O43493	TGOLN2	Trans-Golgi network integral membrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	11.467	11.209	2	7.6435E-10	8988	160511_QHF_FH_JSI10i_1	148.28	131.61			0.69495	0.66374	28.86	5	4	Median	NaN	NaN	NaN	0	0	Median	0.51618	0.61471	NaN	1	0	Median	0.85717	0.82049	29.983	2	2	Median	0.82072	0.84839	40.925	2	2	Median	147880000	82324000	65557000	0	0	0	37053000	23917000	13136000	48104000	25690000	22414000	62723000	32716000	30007000	47670	340	44874	287499;287500;287501;287502;287503	385557;385558;385559;385560;385561;385562	385562			6	
SSAELEDQNK	1	Unmodified	1119.5044	0.50439648	632	O94964	SOGA1	Protein SOGA1;N-terminal form;C-terminal 80 kDa form	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.2642	8.5312	2	0.013159	6166	160511_QHF_FH_JSI9i_1	54.191	40.838			0.64613	0.52855	NaN	1	1	Median	0.64613	0.52855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15276000	9104800	6171100	15276000	9104800	6171100	0	0	0	0	0	0	0	0	0	47671	632	44875	287504	385563	385563			1	
SSAEVIAQAR	0	Unmodified	1030.5407	0.5407224	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.68	2	4				1	2			1	3	2	3	21.054	18.075	2	2.0955E-09	14814	160511_QHF_FH_JSI11i_2	130.75	73.7			0.86686	0.90288	24.99	9	1	Median	1.0485	0.90288	NaN	1	0	Median	0.53301	0.81865	31.723	3	0	Plateau	1.0402	1.0399	2.3054	2	0	Median	0.86686	0.93656	21.591	3	1	Median	807510000	477430000	330080000	107740000	53280000	54461000	230900000	148570000	82323000	198520000	102150000	96375000	270350000	173430000	96921000	47672	2739	44876	287505;287506;287507;287508;287509;287510;287511;287512;287513	385564;385565;385566;385567;385568;385569;385570;385571;385572;385573;385574;385575;385576;385577;385578	385572			14	
SSAFGTLNWFTK	1	Unmodified	1357.6667	0.6666512	2837	Q4KMQ2	ANO6	Anoctamin-6	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	86.318	85.477	2	3.9541E-05	70063	160511_QHF_FH_JSI9i_3	103.08	75.754			0.8137	0.86123	9.2846	3	1	Plateau	1.2614	1.0017	NaN	1	0	Median	0.79408	0.90786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8137	0.83199	NaN	1	1	Median	134440000	66228000	68208000	29979000	14714000	15266000	34942000	16011000	18931000	0	0	0	69515000	35504000	34011000	47673	2837	44877	287514;287515;287516	385579;385580;385581	385579			3	
SSAGDTEFVHQNSQEIQR	0	Unmodified	2031.9246	0.92460981	306	O43164	PJA2	E3 ubiquitin-protein ligase Praja-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										1	3	28.699	28.331	3	0.00029048	23839	160511_QHF_FH_JSI12i_2	54.288	44.873			0.69172	0.67791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69172	0.67791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13357000	9390900	3966000	0	0	0	0	0	0	13357000	9390900	3966000	0	0	0	47674	306	44878	287517;287518;287519;287520	385582;385583;385584;385585	385583			4	
SSAGIDHAEEMELLLENYYR	0	Unmodified	2339.074	0.073976164	4869	Q9HD23	MRS2	Magnesium transporter MRS2 homolog, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	92.234	91.412	3	0.00021057	78940	160511_QHF_FH_JSI12i_2	59.281	51.478			0.78854	0.89366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78854	0.89366	NaN	1	1	Median	9630100	7455600	2174500	0	0	0	0	0	0	0	0	0	9630100	7455600	2174500	47675	4869	44879	287521	385586	385586			1	
SSAIPDFRDPQK	1	Unmodified	1359.6783	0.67827852	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.645	37.482	3	0.0060073	31854	160511_QHF_FH_JSI12i_3	49.929	41.33			0.58821	0.59302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58821	0.59302	NaN	1	1	Median	196100000	119380000	76718000	0	0	0	0	0	0	0	0	0	196100000	119380000	76718000	47676	1774	44880	287522	385587	385587			1	
SSAIVEIFSK	1	Unmodified	1079.5863	0.58627561	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.891	66.595	2	0.0014431	57538	160511_QHF_FH_JSI12i_3	77.14	64.613			3.2678	3.3841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.2678	3.3841	NaN	1	1	Median	22672000	6432300	16239000	0	0	0	0	0	0	0	0	0	22672000	6432300	16239000	47677	5293	44881	287523	385588	385588			1	
SSALASK	1	Unmodified	662.3599	0.35990449	1372;1296	P31327;P27708	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.98	3	4				1	1			1	2	3	3	5.2838	3.3946	2	0.0061558	2941	160511_QHF_FH_JSI12i_1	92.187	49.187			1.032	1.1747	25.754	9	2	Median	1.4441	1.2109	NaN	1	0	Median	0.94047	1.1287	17.685	2	0	Median	1.0119	0.98199	29.929	3	1	Median	1.1051	1.1747	39.667	3	1	Median	6061300000	3220200000	2841100000	559400000	270550000	288850000	1807200000	1030400000	776820000	2098300000	1073000000	1025400000	1596400000	846310000	750050000	47678	1372;1296	44882	287524;287525;287526;287527;287528;287529;287530;287531;287532	385589;385590;385591;385592;385593;385594;385595;385596;385597;385598	385591			10	
SSALQWLTPEQTSGK	1	Unmodified	1631.8155	0.81550028	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.6	4	4	2					3		3	2	5	3	69.111	66.62	2	1.8749E-98	58447	160511_QHF_FH_JSI11i_2	265.53	240.68			0.99614	0.98687	36.421	11	2	Median	1.1591	0.98687	55.686	3	1	Plateau	0.85142	1.0372	7.177	2	0	Median	0.99614	0.99598	3.9371	3	1	Median	0.88855	0.98672	27.69	3	0	Plateau	764110000	382650000	381460000	124480000	54182000	70298000	202500000	113290000	89206000	211730000	109290000	102440000	225400000	105880000	119520000	47679	943	44883	287533;287534;287535;287536;287537;287538;287539;287540;287541;287542;287543;287544;287545	385599;385600;385601;385602;385603;385604;385605;385606;385607;385608;385609;385610;385611;385612;385613;385614;385615;385616;385617;385618;385619;385620;385621;385622;385623;385624	385618			26	
SSALVIQSYIR	0	Unmodified	1235.6874	0.68738664	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.2	0.4								4	1	2	2	1		73.769	63.62	2	8.041E-05	31803	160513_QHF_FH_JSI10Kac_5	98.249	69.162			1.4328	1.3857	29.075	3	1	Plateau	1.1618	0.94853	NaN	1	0	Median	0.67437	0.7825	NaN	1	1	Median	1.4328	1.3857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24653000	10643000	14010000	2340500	1096800	1243700	3302900	1991100	1311800	19010000	7554900	11455000	0	0	0	47680	376	44884	287546;287547;287548;287549;287550	385625;385626;385627;385628;385629	385628			3	
SSAMSSDGSLAENGVMAEEK	1	Unmodified	1998.851	0.85103544	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.39	45.714	2	6.0801E-55	41537	160511_QHF_FH_JSI12i_1	223.7	202.91			0.98995	0.97973	14.632	4	1	Median	1.1304	0.90483	NaN	1	0	Median	0.90778	1.0608	NaN	1	1	Median	0.84274	0.80525	NaN	1	0	Median	1.0796	1.1053	NaN	1	0	Median	102420000	56397000	46027000	26352000	11304000	15048000	16822000	9911600	6910400	32519000	21330000	11189000	26730000	13851000	12879000	47681	5147	44885	287551;287552;287553;287554	385630;385631;385632;385633;385634	385631			5	
SSANVEEAFFTLAR	0	Unmodified	1540.7522	0.75217174	3909	Q92930	RAB8B	Ras-related protein Rab-8B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	57.8	57.052	3	0.032755	49431	160511_QHF_FH_JSI11i_2	24.935	17.733			0.31328	0.31365	32.399	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.29568	0.36342	NaN	1	1	Median	0.33192	0.34562	NaN	1	1	Median	0.39482	0.41762	53.546	2	2	Median	3505400000	2493300000	1012100000	0	0	0	956440000	712880000	243550000	1173700000	766820000	406910000	1375300000	1013600000	361650000	47682	3909	44886	287555;287556;287557;287558	385635;385636;385637;385638	385636			4	
SSAPAQEEEEDPLAYYENHTSQIEIVR	0	Unmodified	3104.4211	0.42106736	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	80.781	80.442	3	2.1893E-09	72880	160511_QHF_FH_JSI10i_1	68.835	66.107			0.80092	0.84741	2.6823	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76518	0.86364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83832	0.83149	NaN	1	1	Median	44724000	31282000	13442000	0	0	0	30100000	21301000	8799900	0	0	0	14624000	9981100	4642500	47683	2547	44887	287559;287560	385639;385640	385640			2	
SSAQDPQAVLGALGR	0	Unmodified	1468.7634	0.76340513	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.9	6	3				2	3			2	4	4	4	67.039	63.051	2;3	1.3927E-116	57291	160511_QHF_FH_JSI12i_1	270.74	238.32			0.94016	0.99148	39.051	14	5	Median	1.343	1.1015	8.4479	2	0	Median	0.82484	0.99045	41.747	4	2	Median	1.0139	0.98366	48.166	4	1	Median	0.81221	0.87095	42.354	4	2	Median	3514000000	1760600000	1753400000	889510000	385430000	504080000	755920000	408720000	347200000	1193100000	624370000	568770000	675460000	342090000	333370000	47684	1283	44888	287561;287562;287563;287564;287565;287566;287567;287568;287569;287570;287571;287572;287573;287574	385641;385642;385643;385644;385645;385646;385647;385648;385649;385650;385651;385652;385653;385654;385655;385656;385657;385658;385659	385646			18	
SSAQGKPLALK	2	Unmodified	1098.6397	0.63970816	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.507	14.57	2	0.0011883	11391	160511_QHF_FH_JSI12i_3	101.66	83.679			1.9828	1.8426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9828	1.8426	NaN	1	1	Median	31737000	8207900	23530000	0	0	0	0	0	0	0	0	0	31737000	8207900	23530000	47685	1578	44889	287575	385660	385660			1	
SSAQLQTNYPSSDNSLYTNAK	1	Unmodified	2288.0557	0.055683563	1947	P61244	MAX	Protein max	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			47.344	46.918	2	2.4401E-06	42218	160511_QHF_FH_JSI10i_1	77.754	64.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47686	1947	44890	287576	385661	385661			1	
SSASAPDVDDPEAFPALA	0	Unmodified	1758.7948	0.79482442	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.33	6			2						2	3	1	2	81.304	78.528	2	1.3475E-22	72855	160511_QHF_FH_JSI11i_1	172.56	157.02			1.1245	1.2122	15.553	7	2	Median	1.6652	1.3518	2.1095	2	1	Median	1.1255	1.3112	23.42	2	1	Median	1.0904	1.0536	NaN	1	0	Median	1.0404	1.1048	13.125	2	0	Median	1410600000	660140000	750450000	312510000	125350000	187160000	265010000	134480000	130520000	515430000	238120000	277310000	317650000	162190000	155450000	47687	3609	44891	287577;287578;287579;287580;287581;287582;287583;287584	385662;385663;385664;385665;385666;385667;385668;385669;385670;385671;385672;385673;385674;385675;385676;385677	385663			16	
SSASEFQPSFHQADNVR	0	Unmodified	1905.8606	0.86055299	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	39.324	38.563	3	1.9502E-06	32815	160511_QHF_FH_JSI12i_3	97.214	85.952			0.84002	0.88921	17.476	4	2	Median	1.2313	1.0731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71243	0.71127	NaN	1	1	Median	0.84002	0.88921	8.2147	2	1	Median	189370000	103680000	85691000	36985000	15972000	21014000	0	0	0	53703000	32356000	21347000	98683000	55352000	43331000	47688	3144	44892	287585;287586;287587;287588;287589;287590	385678;385679;385680;385681;385682	385682			5	
SSASFNVIEFPYK	1	Unmodified	1487.7296	0.72964538	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0				By MS/MS	1.5	0.5	1	1											2	79.931	79.08	2	1.0388E-05	68202	160511_QHF_FH_JSI12i_2	134.3	124			2.5019	2.6954	30.476	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5019	2.6954	30.476	2	2	Median	130950000	37608000	93346000	0	0	0	0	0	0	0	0	0	130950000	37608000	93346000	47689	859	44893	287591;287592	385683;385684	385683			2	
SSASFSTTAVSAR	0	Unmodified	1270.6153	0.61534391	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.4	3	4				1	3	1	1	2	5	3	3	31.731	27.432	2	8.5416E-25	16834	160513_QHF_FH_JSI11Kac_4	164.65	160.2			0.9692	1.0735	7.587	12	0	Median	1.3246	1.1104	3.166	2	0	Median	0.93401	1.1037	3.1464	4	0	Median	0.96692	0.96097	5.1405	3	0	Median	0.97883	1.0614	10.593	3	0	Median	615870000	310850000	305020000	73460000	35010000	38451000	192590000	97157000	95435000	204530000	103440000	101090000	145280000	75243000	70042000	47690	1962	44894	287593;287594;287595;287596;287597;287598;287599;287600;287601;287602;287603;287604;287605	385685;385686;385687;385688;385689;385690;385691;385692;385693;385694;385695;385696;385697;385698;385699;385700;385701;385702;385703;385704;385705;385706;385707;385708	385697			24	
SSASTAVSAAPTEK	1	Unmodified	1305.6412	0.64122431	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	3	1	17.837	16.03	2	3.9037E-15	13297	160511_QHF_FH_JSI9i_1	166.14	132.88			0.99982	1.0226	15.155	5	0	Median	1.256	1.0226	NaN	1	0	Median	0.76555	0.91173	NaN	1	0	Median	1.1395	1.0977	26.05	2	0	Median	0.99982	1.0661	NaN	1	0	Median	229430000	106540000	122890000	42933000	15598000	27336000	63697000	33725000	29973000	62014000	29042000	32972000	60786000	28177000	32608000	47691	806	44895	287606;287607;287608;287609;287610;287611	385709;385710;385711;385712;385713;385714;385715;385716;385717	385717			9	
SSASVVFTTYTQK	1	Unmodified	1417.7089	0.70890994	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.52		3	3					3	3	2	4	3	3	55.06	49.153	2	8.1476E-21	26926	160513_QHF_FH_JSI11Kac_5	160.36	144.13			0.93999	1.3495	27.591	9	1	Linear	1.1113	0.92252	NaN	1	0	Median	0.90941	1.1109	44.249	3	1	Plateau	1.0126	0.97365	10.151	2	0	Median	0.94092	1.2438	10.721	3	0	Plateau	227970000	120210000	107760000	5214600	2660600	2554000	55312000	32263000	23049000	63959000	35921000	28038000	103480000	49369000	54115000	47692	3231	44896	287612;287613;287614;287615;287616;287617;287618;287619;287620;287621;287622;287623	385718;385719;385720;385721;385722;385723;385724;385725;385726;385727;385728;385729	385724			12	
SSATSGDIWPGLSAYDNSPR	0	Unmodified	2079.9498	0.94976193	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	72.226	71.729	2;3	3.1252E-68	65353	160511_QHF_FH_JSI12i_1	237.46	192.21			1.2162	1.1784	15.135	9	4	Median	1.647	1.3313	28.086	2	1	Median	0.94259	1.0971	8.4361	2	0	Median	1.2162	1.1811	4.1486	3	2	Plateau	1.281	1.3384	17.031	2	1	Median	395850000	176450000	219400000	75874000	31065000	44809000	66768000	35237000	31531000	183320000	81037000	102290000	69882000	29109000	40774000	47693	5124	44897	287624;287625;287626;287627;287628;287629;287630;287631;287632	385730;385731;385732;385733;385734;385735;385736;385737;385738;385739;385740	385732			11	
SSATVTGEPPSYSSGSDSSK	1	Unmodified	1929.844	0.84395945	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	25.246	24.554	2	1.1177E-18	21097	160511_QHF_FH_JSI9i_1	164.81	155.86			1.083	0.90119	5.8368	3	2	Plateau	1.083	0.90119	NaN	1	0	Median	0.76979	0.89143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99925	0.99121	NaN	1	1	Median	51663000	19938000	31725000	22687000	8626000	14061000	14368000	6993400	7374600	0	0	0	14608000	4318600	10289000	47694	1443	44898	287633;287634;287635;287636;287637	385741;385742;385743;385744;385745;385746	385746			6	
SSAVDPEPQVK	1	Unmodified	1155.5772	0.57716749	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	2	2	3	24.338	20.744	2	4.2995E-05	18011	160511_QHF_FH_JSI12i_1	96.665	89.185			0.92341	0.90497	13.711	7	1	Median	1.0409	0.85489	NaN	1	0	Median	0.67353	0.77496	16.838	2	1	Median	0.97078	0.95147	7.087	2	0	Median	0.93807	1.0083	0.33796	2	0	Median	655400000	331160000	324240000	122650000	63617000	59031000	142080000	80602000	61473000	191290000	89442000	101840000	199400000	97501000	101900000	47695	2927	44899	287638;287639;287640;287641;287642;287643;287644;287645	385747;385748;385749;385750;385751;385752;385753	385748			7	
SSAVQQLLEK	1	Unmodified	1101.603	0.60298831	5446	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.204	49.968	2	0.033592	42759	160511_QHF_FH_JSI12i_3	56.258	32.103			1.3117	1.3448	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3117	1.3448	NaN	1	0	Median	66134000	32910000	33224000	0	0	0	0	0	0	0	0	0	66134000	32910000	33224000	47696	5446	44900	287646	385754	385754			0	
SSAYESLMEIVK	1	Unmodified	1355.6643	0.66426794	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	6.12	3	5	1					4		3	5	3	2	83.785	81.167	2	1.2912E-28	73871	160511_QHF_FH_JSI10i_2	164.64	135.17			0.98799	1.0187	8.7367	10	3	Median	1.0577	0.8819	7.6843	2	0	Median	0.83542	0.97483	6.6172	3	1	Median	1.0435	1.0232	5.5456	3	1	Median	0.98825	1.063	2.964	2	1	Median	2307900000	1143300000	1164600000	587120000	303910000	283210000	496410000	271770000	224630000	681040000	307140000	373910000	543350000	260520000	282830000	47697	2585	44901	287647;287648;287649;287650;287651;287652;287653;287654;287655;287656;287657;287658;287659	385755;385756;385757;385758;385759;385760;385761;385762;385763;385764;385765;385766;385767;385768;385769;385770	385769			16	
SSAYESLMEIVK	1	Oxidation (M)	1371.6592	0.65918256	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		15	0								5		2	1	2		75.093	64.503	2	5.959E-08	34505	160513_QHF_FH_JSI11Kac_5	107.83	88.069			0.96793	0.87204	21.651	5	2	Median	1.3288	1.1128	35.185	2	1	Median	0.75899	0.86023	NaN	1	0	Median	0.92175	0.91055	6.1102	2	1	Median	NaN	NaN	NaN	0	0	Median	19046000	8783600	10262000	7060100	2995400	4064700	2162000	1167800	994210	9823900	4620500	5203500	0	0	0	47698	2585	44901	287660;287661;287662;287663;287664	385771;385772;385773;385774;385775;385776;385777;385778	385774		2031	8	
SSCQIIQFMEGDK	1	Unmodified	1541.6854	0.68541408	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.598	72.323	2	0.015334	62412	160511_QHF_FH_JSI12i_2	52.247	46.006			1.4892	1.6622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4892	1.6622	NaN	1	1	Median	15155000	8325600	6829800	0	0	0	0	0	0	0	0	0	15155000	8325600	6829800	47699	2962	44902	287665	385779	385779			1	
SSCTLFQDIFQHLDK	1	Unmodified	1837.8669	0.86688392	5449	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	100.88	100.88	3	0.004357	87450	160511_QHF_FH_JSI12i_3	73.296	66.463			1.0126	0.97121	25.011	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89561	0.81378	NaN	1	0	Median	1.1449	1.1591	NaN	1	0	Median	69986000	37559000	32428000	0	0	0	0	0	0	34896000	20414000	14482000	35090000	17145000	17946000	47700	5449	44903	287666;287667	385780	385780			0	
SSDAFTTQHALR	0	Unmodified	1332.6422	0.64222736	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		22.805	22.805	3	0.042162	19342	160511_QHF_FH_JSI11i_3	21.06	11.738			1.0533	0.98667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0533	0.98667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45385000	24538000	20847000	0	0	0	0	0	0	45385000	24538000	20847000	0	0	0	47701	662	44904	287668	385781	385781			1	
SSDASTAQPPESQPLPASQTPASNQPK	1	Unmodified	2720.2889	0.28893098	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	37.827	37.21	3	4.8786E-10	33514	160511_QHF_FH_JSI11i_1	75.326	72.403			0.94712	0.95437	11.636	4	1	Median	1.3214	1.0951	NaN	1	0	Median	0.71913	0.83957	NaN	1	1	Median	1.025	1.0047	NaN	1	0	Median	0.87515	0.90654	NaN	1	0	Median	135630000	74216000	61410000	22405000	10970000	11435000	27817000	18669000	9148000	44048000	21855000	22192000	41356000	22721000	18635000	47702	1628	44905	287669;287670;287671;287672;287673	385782;385783;385784;385785;385786;385787;385788;385789;385790;385791;385792	385782			11	
SSDEAVILCK	1	Unmodified	1120.5434	0.54342452	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		33.94	33.698	2	0.00057643	30255	160511_QHF_FH_JSI11i_1	81.95	68.573			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47703	5441	44906	287674	385793	385793			1	
SSDFLESAELDSGGFGK	1	Unmodified	1744.7792	0.77917435	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				75.838	74.945	2	2.2098E-10	66645	160511_QHF_FH_JSI9i_1	164.13	149.25			0.093079	0.077582	NaN	1	1	Median	0.093079	0.077582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212250000	188050000	24206000	212250000	188050000	24206000	0	0	0	0	0	0	0	0	0	47704	2437	44907	287675	385794	385794			1	
SSDIVSSVR	0	Unmodified	948.48762	0.4876242	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		21.839	21.701	2	0.030587	18726	160511_QHF_FH_JSI11i_1	48.091	11.696			0.64734	0.60664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64734	0.60664	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63981000	38721000	25260000	0	0	0	0	0	0	63981000	38721000	25260000	0	0	0	47705	2591	44908	287676	385795	385795			1	
SSDQPLTVPVSPK	1	Unmodified	1353.714	0.71399532	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	46.533	45.855	2	0.00026386	41353	160511_QHF_FH_JSI11i_1	101.43	94.302			0.57681	0.41833	16.204	4	3	Linear	0.69416	0.56102	NaN	1	1	Median	0.35164	0.41877	NaN	1	0	Median	0.58785	0.55944	NaN	1	1	Median	0.56598	0.60413	NaN	1	1	Median	232650000	157340000	75304000	49869000	28390000	21479000	75841000	60291000	15550000	62380000	40381000	21999000	44557000	28282000	16275000	47706	5412	44909	287677;287678;287679;287680;287681	385796;385797;385798;385799;385800;385801	385796			6	
SSDRLDEAAQR	0	Unmodified	1246.5902	0.59019179	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	9.6101	9.4762	2	0.0064049	7122	160511_QHF_FH_JSI11i_3	67.334	45.87			0.97179	0.9138	8.414	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72748	0.88063	NaN	1	0	Median	0.97179	0.9138	NaN	1	0	Median	1.0144	1.0341	NaN	1	0	Median	74765000	37728000	37037000	0	0	0	20733000	10341000	10392000	37753000	18967000	18786000	16279000	8419600	7859100	47707	4863	44910	287682;287683;287684	385802;385803;385804	385802			3	
SSDSKPGVSSK	2	Unmodified	1077.5302	0.5302173	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	1	1		1								1	1		4.9341	4.8145	2	0.0022855	2638	160511_QHF_FH_JSI10i_1	96.171	68.347			0.62856	0.65361	21.465	2	1	Median	NaN	NaN	NaN	0	0	Median	0.47523	0.56157	NaN	1	1	Median	0.83137	0.76075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101550000	63490000	38060000	0	0	0	73601000	48894000	24707000	27948000	14595000	13353000	0	0	0	47708	3264	44911	287685;287686	385805;385806	385806			2	
SSDTNIFDSNVPSNK	1	Unmodified	1623.7376	0.73764389	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	3	1	45.683	44.809	2	1.3054E-11	40170	160511_QHF_FH_JSI10i_1	108.72	92.827			0.82794	0.78696	35.211	4	0	Median	0.66499	0.5582	35.021	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98283	0.96509	NaN	1	0	Median	0.81196	0.8661	NaN	1	0	Median	153620000	87702000	65914000	74518000	44818000	29700000	0	0	0	41713000	19301000	22412000	37385000	23583000	13802000	47709	3128	44912	287687;287688;287689;287690;287691;287692;287693;287694	385807;385808;385809;385810;385811;385812;385813;385814	385811			8	
SSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDK	2	Acetyl (Protein N-term)	4513.1481	0.14808698	2066	P67809	YBX1	Nuclease-sensitive element-binding protein 1	yes	yes	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	67.767	67.089	4	1.4521E-28	61060	160511_QHF_FH_JSI11i_1	37.841	36.703			1.1235	0.9604	8.3004	3	0	Plateau	1.1839	0.95988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1235	1.1091	NaN	1	0	Median	1.0778	1.1074	NaN	1	0	Median	423300000	191500000	231800000	228430000	109930000	118500000	0	0	0	93600000	40543000	53057000	101270000	41024000	60246000	47710	2066	44913	287695;287696;287697	385815;385816;385817;385818	385815			4	
SSEAVIWEVLRK	1	Unmodified	1415.7773	0.77726428	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	3.99		2	7						1	2	3	3	2	76.47	74.863	2;3	6.5751E-06	67188	160511_QHF_FH_JSI11i_3	98.902	90.105			1.2249	1.3836	27.465	5	2	Median	NaN	NaN	NaN	0	0	Median	1.022	1.1814	22.346	2	1	Median	1.6207	1.508	NaN	1	0	Median	1.3142	1.3402	45.789	2	1	Median	244550000	106600000	137950000	0	0	0	67756000	30793000	36963000	102140000	40603000	61532000	74658000	35199000	39459000	47711	5436	44914	287698;287699;287700;287701;287702;287703;287704;287705;287706;287707	385819;385820;385821;385822;385823;385824;385825;385826;385827;385828;385829;385830;385831;385832;385833	385820			14	
SSEDATDDISSGNIPVLQK	1	Unmodified	1974.9382	0.93819419	3389	Q86YT6	MIB1	E3 ubiquitin-protein ligase MIB1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				64.596	63.547	2	1.6068E-05	56489	160511_QHF_FH_JSI9i_1	84.892	72.261			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47712	3389	44915	287708	385834	385834			1	
SSEEIESAFR	0	Unmodified	1153.5251	0.52513192	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.026	37.606	2	0.0026467	33867	160511_QHF_FH_JSI11i_1	72.607	53.629			0.62641	0.72352	23.265	3	3	Median	NaN	NaN	NaN	0	0	Median	0.62641	0.72352	NaN	1	1	Median	1.001	0.98819	NaN	1	1	Median	0.60734	0.62695	NaN	1	1	Median	253730000	142190000	111540000	0	0	0	86173000	52659000	33515000	93715000	45213000	48502000	73843000	44316000	29527000	47713	2470	44916	287709;287710;287711;287712	385835;385836;385837;385838	385835			4	
SSEGPKPEK	2	Unmodified	957.47673	0.47672516	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	2	4								1	2	3		4.7297	4.463	2	0.00034672	2274	160511_QHF_FH_JSI11i_2	120.15	61.237			1.1405	1.0784	19.479	5	1	Median	1.0564	0.91409	NaN	1	0	Median	0.98769	1.178	27.876	2	0	Median	1.2313	1.1919	14.157	2	1	Median	NaN	NaN	NaN	0	0	Median	346800000	163400000	183400000	58453000	22710000	35743000	124440000	58436000	66004000	163910000	82251000	81656000	0	0	0	47714	5646	44917	287713;287714;287715;287716;287717;287718	385839;385840;385841;385842;385843	385841			5	
SSEHINEGETAMLVCK	1	Unmodified	1803.8131	0.81313379	1441	P35613	BSG	Basigin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.47	4.16	3	9	1				2			3	4	3	5	41.72	39.653	2;3	5.8091E-08	34516	160511_QHF_FH_JSI9i_2	136.27	122.36			0.89761	0.95536	35.181	15	2	Median	1.082	0.92029	48.449	3	2	Median	0.80114	0.94941	4.8056	4	0	Median	0.67999	0.70484	5.2211	3	0	Median	1.2751	1.3594	20.773	5	0	Median	1557800000	825380000	732410000	173810000	77542000	96272000	380430000	218420000	162010000	591130000	331970000	259160000	412420000	197460000	214960000	47715	1441	44918	287719;287720;287721;287722;287723;287724;287725;287726;287727;287728;287729;287730;287731;287732;287733	385844;385845;385846;385847;385848;385849;385850;385851;385852;385853;385854;385855;385856;385857;385858;385859;385860;385861;385862	385853			17	
SSEIEQAVQSLDR	0	Unmodified	1460.7107	0.71070086	4338	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								2	3	3	2	63.515	62.784	2	3.0588E-10	57235	160511_QHF_FH_JSI12i_1	146.16	127.42			1.1596	0.93674	32.179	9	4	Median	1.2682	1.0481	15.886	2	1	Median	1.1536	1.3785	63.181	2	1	Median	1.2847	1.2698	22.072	3	2	Plateau	1.0476	1.1346	41.075	2	0	Median	442990000	220670000	222320000	71315000	34768000	36548000	86343000	42931000	43412000	182940000	94188000	88754000	102390000	48783000	53609000	47716	4338	44919	287734;287735;287736;287737;287738;287739;287740;287741;287742;287743	385863;385864;385865;385866;385867;385868;385869;385870;385871;385872;385873;385874;385875;385876	385868			14	
SSELEQYLQR	0	Unmodified	1251.6095	0.60953025	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	51.16	50.181	2	9.945E-09	44029	160511_QHF_FH_JSI9i_2	122.33	102.54			0.89041	0.90928	10.753	4	2	Median	1.0293	0.87599	NaN	1	1	Median	0.61748	0.75796	NaN	1	1	Median	0.93789	0.95946	NaN	1	0	Median	0.84533	0.94384	NaN	1	0	Median	327220000	183080000	144140000	83526000	47733000	35794000	45622000	25055000	20567000	90201000	47223000	42977000	107870000	63067000	44805000	47717	5289	44920	287744;287745;287746;287747;287748	385877;385878;385879;385880;385881	385879			5	
SSELQAIK	1	Unmodified	874.476	0.47599688	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		21.185	20.531	2	0.0083499	17402	160511_QHF_FH_JSI9i_1	57.047	25.818			0.61452	0.55415	4.4629	2	0	Median	0.68752	0.57191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54927	0.53693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	197320000	108130000	89189000	87368000	43398000	43970000	0	0	0	109950000	64732000	45219000	0	0	0	47718	5375	44921	287749;287750	385882;385883	385883			1	
SSEMNILIPQDGDYREFPIPEQFK	1	Unmodified	2852.3691	0.36909555	1491	P40123	CAP2	Adenylyl cyclase-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.56	100.44	3	7.8661E-21	86304	160511_QHF_FH_JSI12i_2	122.34	112.88			1.0133	1.0106	6.8911	4	0	Median	1.1168	0.96119	NaN	1	0	Median	0.76373	0.93808	NaN	1	0	Median	1.0727	1.0741	NaN	1	0	Median	0.95714	1.0626	NaN	1	0	Median	242180000	129090000	113090000	38636000	16947000	21690000	45789000	25281000	20508000	73331000	38472000	34859000	84428000	48395000	36033000	47719	1491	44922	287751;287752;287753;287754	385884;385885;385886;385887;385888;385889;385890;385891	385884			8	
SSEMNVLIPTEGGDFNEFPVPEQFK	1	Unmodified	2810.3109	0.31091197	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	101.35	101.23	2;3	3.1887E-42	91800	160511_QHF_FH_JSI12i_1	192.96	182.91			1.0008	0.95354	8.8903	8	2	Median	1.183	0.9777	8.2717	2	0	Median	0.80169	0.94596	NaN	1	0	Median	1.1561	1.1143	8.1379	2	0	Median	0.91987	0.94896	3.2365	3	2	Median	2920500000	1557600000	1363000000	335420000	161530000	173890000	642120000	414790000	227340000	813730000	403000000	410730000	1129200000	578240000	551000000	47720	2169	44923	287755;287756;287757;287758;287759;287760;287761;287762;287763	385892;385893;385894;385895;385896;385897;385898;385899;385900;385901	385894			10	
SSEMNVLIPTEGGDFNEFPVPEQFK	1	Oxidation (M)	2826.3058	0.30582659	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	100.77	100.69	3	9.2662E-08	91272	160511_QHF_FH_JSI12i_1	66.017	58.986			0.82828	0.99911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82828	0.99911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136550000	42298000	94250000	0	0	0	79465000	42298000	37166000	0	0	0	57084000	0	57084000	47721	2169	44923	287764;287765	385902;385903;385904	385902		1821	3	
SSENGALPVVSVVR	0	Unmodified	1412.7623	0.7623425	5572	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			58.289	57.895	2	0.053536	52438	160511_QHF_FH_JSI10i_1	49.243	38.436			1.0742	1.255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47759000	21020000	26739000	0	0	0	47759000	21020000	26739000	0	0	0	0	0	0	47722	5572	44924	287766	385905	385905			0	
SSENGVDYVIMGMPHR	0	Unmodified	1790.808	0.80798883	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	62.584	61.933	2;3	9.9137E-16	53947	160511_QHF_FH_JSI11i_2	139.94	136.11			1.154	1.1385	14.206	6	1	Median	1.325	1.1647	NaN	1	0	Median	0.90149	1.1129	NaN	1	0	Median	1.1359	1.0951	22.383	2	0	Median	1.1951	1.2563	17.24	2	1	Median	832950000	407780000	425180000	130260000	59823000	70441000	208360000	113390000	94963000	306510000	147150000	159360000	187820000	87409000	100410000	47723	2185	44925	287767;287768;287769;287770;287771;287772;287773	385906;385907;385908;385909;385910;385911;385912;385913;385914;385915	385912			10	
SSENNSLNPEVMR	0	Unmodified	1475.6675	0.66745583	5488	Q9Y232	CDYL	Chromodomain Y-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	32.58	32.34	2	3.6177E-12	28820	160511_QHF_FH_JSI10i_1	117.09	99.227			1.3855	1.3295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3855	1.3295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36084000	10500000	25584000	0	0	0	0	0	0	36084000	10500000	25584000	0	0	0	47724	5488	44926	287774;287775;287776;287777	385916;385917;385918;385919	385919			4	
SSENPNEVFR	0	Unmodified	1177.5364	0.53636531	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.95	4	3				1	3			2	3	2	4	28.125	24.362	2	1.4349E-09	21355	160511_QHF_FH_JSI11i_1	134.25	121.21			1.0633	1.1072	8.6701	11	0	Median	1.2596	1.0238	3.7015	2	0	Median	0.95975	1.1072	9.2411	3	0	Median	1.1938	1.1679	11.451	2	0	Median	1.0544	1.1353	8.0938	4	0	Median	1428100000	656150000	771920000	284510000	114290000	170210000	364010000	180690000	183320000	301330000	133460000	167870000	478230000	227720000	250520000	47725	1573	44927	287778;287779;287780;287781;287782;287783;287784;287785;287786;287787;287788	385920;385921;385922;385923;385924;385925;385926;385927;385928;385929;385930;385931;385932;385933;385934;385935;385936;385937	385921			17	
SSENYQIVK	1	Unmodified	1066.5295	0.52948901	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		22.925	22.385	2	0.0044841	19414	160511_QHF_FH_JSI10i_1	56.81	40.666			0.64855	0.63416	10.639	3	0	Plateau	0.97726	0.78448	NaN	1	0	Median	0.59526	0.70822	NaN	1	0	Median	0.64855	0.63416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141850000	70242000	71607000	40954000	18534000	22420000	44882000	21135000	23746000	56014000	30573000	25441000	0	0	0	47726	2547	44928	287789;287790;287791	385938;385939	385938			2	
SSEPPPPPQPPTHQASVGLLDTPR	0	Acetyl (Protein N-term)	2546.2765	0.2765158	5540	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	4	2	64.904	64.324	2;3	5.1765E-33	57084	160511_QHF_FH_JSI9i_1	235.75	224.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47727	5540	44929	287792;287793;287794;287795;287796;287797;287798;287799;287800;287801	385940;385941;385942;385943;385944;385945;385946;385947;385948;385949;385950;385951;385952;385953;385954;385955;385956;385957;385958;385959;385960;385961;385962;385963	385962			24	
SSEPVQLTEAETEYFVR	0	Unmodified	1983.9426	0.94255129	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	78.364	77.845	2;3	3.216E-09	70832	160511_QHF_FH_JSI11i_1	161.76	147.2			0.97093	0.95521	9.3007	5	2	Median	1.211	0.97968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93174	0.90379	4.0345	2	1	Median	0.99847	1.0378	11.727	2	0	Median	182560000	88514000	94049000	26617000	12300000	14316000	0	0	0	79256000	36616000	42640000	76690000	39598000	37092000	47728	5234	44930	287802;287803;287804;287805;287806	385964;385965;385966;385967;385968	385965			5	
SSEQILATLK	1	Unmodified	1088.6077	0.60773933	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	52.051	51.272	2	2.5599E-05	46861	160511_QHF_FH_JSI12i_1	97.565	70.872			0.75483	0.73942	20.34	6	4	Median	0.87769	0.74289	22.268	2	1	Median	0.58008	0.69283	6.2793	2	2	Median	0.76946	0.75486	NaN	1	1	Median	1.0587	1.1021	NaN	1	0	Median	1224100000	611250000	612840000	340250000	176160000	164080000	485030000	252240000	232790000	245980000	116860000	129120000	152830000	65988000	86838000	47729	5426	44931	287807;287808;287809;287810;287811;287812	385969;385970;385971;385972;385973	385970			5	
SSEQILATLKGHTK	2	Acetyl (K)	1553.8413	0.8413211	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	71.442	61.898	3	0.0011552	33548	160513_QHF_FH_JSI11Kac_6	60.246	52.838			0.46643	0.46818	38.245	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37687	0.35724	NaN	1	0	Median	0.57726	0.61356	NaN	1	0	Median	82770000	57531000	25240000	0	0	0	0	0	0	64595000	45402000	19194000	18175000	12129000	6046000	47730	5426	44932	287813;287814	385974	385974	3407		1	
SSESGNSVKR	1	Acetyl (K)	1091.5207	0.52071524	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.687					2	3	1				3	2	1	6.801	-0.90026	2	2.25E-32	2423	160513_QHF_FH_JSI12Kac_3	190.96	133.4			0.99048	1.1372	11.027	6	0	Median	NaN	NaN	NaN	0	0	Median	0.9169	1.0528	7.9977	3	0	Median	1.286	1.2698	1.842	2	0	Median	1.0564	1.1536	NaN	1	0	Median	186350000	95131000	91223000	0	0	0	61530000	33670000	27860000	41159000	15980000	25180000	83664000	45481000	38183000	47731	4610	44933	287815;287816;287817;287818;287819;287820	385975;385976;385977;385978;385979;385980	385979	3196		6	
SSETLRK	1	Unmodified	819.44503	0.4450311	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.558	4.558	2	0.023181	2196	160511_QHF_FH_JSI11i_3	73.637	28.664			1.9624	1.8898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9624	1.8898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	239430000	114160000	125270000	0	0	0	0	0	0	239430000	114160000	125270000	0	0	0	47732	933	44934	287821	385981	385981			1	
SSETQQPLSFKPNTLIGTLNVHTVFLK	2	Unmodified	2998.6128	0.61277172	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.02	81.302	4	2.5014E-06	45783	160513_QHF_FH_JSI10Kac_6	81.799	73.403			0.81631	0.93463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81631	0.93463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59098000	45746000	13352000	0	0	0	59098000	45746000	13352000	0	0	0	0	0	0	47733	478	44935	287822	385982	385982			1	
SSEVFTTFK	1	Unmodified	1044.5128	0.51277632	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.14	5.62	2	3					2				3	3	1	46.43	44.056	2	0.00067613	37693	160511_QHF_FH_JSI11i_2	76.221	48.339			1.0271	1.1837	19.359	6	1	Median	NaN	NaN	NaN	0	0	Median	0.99959	1.1526	22.633	3	0	Median	1.107	1.1097	27.712	2	1	Median	1.0554	1.2157	NaN	1	0	Median	343840000	167650000	176190000	0	0	0	124670000	64930000	59735000	152710000	67315000	85398000	66467000	35408000	31058000	47734	1493	44936	287823;287824;287825;287826;287827;287828;287829	385983;385984;385985;385986;385987;385988;385989;385990	385989			7	
SSFADISNLLQIEPR	0	Unmodified	1688.8733	0.87334951	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.1	101.01	2	6.0419E-119	86833	160511_QHF_FH_JSI12i_2	255.16	228.01			0.76399	0.6839	9.0361	3	0	Median	0.78074	0.6839	NaN	1	0	Median	0.53754	0.65584	NaN	1	0	Median	0.76399	0.77986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	484570000	288760000	195810000	132720000	72647000	60077000	161250000	99121000	62130000	190590000	116990000	73603000	0	0	0	47735	2707	44937	287830;287831;287832;287833	385991;385992;385993;385994	385991			4	
SSFANVAAATPAIK	1	Unmodified	1346.7194	0.71941505	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.104	54.148	2	0.00023614	46803	160511_QHF_FH_JSI11i_2	85.973	76.79			0.6215	0.61598	12.971	4	2	Median	0.62147	0.53693	NaN	1	1	Median	0.46327	0.57149	NaN	1	1	Median	0.68262	0.71048	NaN	1	0	Median	0.62152	0.66394	NaN	1	0	Median	117250000	80123000	37128000	19595000	13279000	6315500	19935000	15227000	4707700	36597000	20445000	16152000	41124000	31172000	9952300	47736	4413	44938	287834;287835;287836;287837	385995;385996;385997;385998;385999;386000	385998			6	
SSFAYKDQNENR	1	Acetyl (K)	1499.6641	0.66408501	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	33.566	24.504	2	5.8158E-05	14804	160513_QHF_FH_JSI12Kac_4	103.22	78.366			28.301	25.909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28.301	25.909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2855800	15926	2839900	0	0	0	0	0	0	1595700	15926	1579800	1260100	0	1260100	47737	4290	44939	287838;287839	386001;386002	386002	3108		2	
SSFDEMLPGTHFQR	0	Unmodified	1650.746	0.7460405	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	3	3	61.392	60.868	2;3	2.2693E-21	53896	160511_QHF_FH_JSI11i_3	174.4	168.36			1.1346	1.1278	7.5167	8	1	Median	1.4753	1.2551	NaN	1	0	Median	0.88413	1.0737	NaN	1	0	Median	1.1073	1.1751	7.1453	3	0	Plateau	0.99471	1.0196	8.1447	3	1	Plateau	1395000000	687570000	707470000	158280000	67210000	91071000	243840000	113620000	130230000	628370000	316060000	312300000	364540000	190680000	173860000	47738	2185	44940	287840;287841;287842;287843;287844;287845;287846;287847;287848	386003;386004;386005;386006;386007;386008;386009;386010;386011	386004			9	
SSFDEMLPGTHFQR	0	Oxidation (M)	1666.741	0.74095513	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	48.125	48.005	3	0.0099525	40973	160511_QHF_FH_JSI12i_3	39.629	34.828			0.90922	0.88716	15.617	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84048	0.79441	NaN	1	0	Median	0.98359	0.99075	NaN	1	0	Median	148880000	80645000	68238000	0	0	0	0	0	0	65567000	34693000	30874000	83316000	45952000	37364000	47739	2185	44940	287849;287850	386012	386012		1828	1	
SSFDKMIEAIK	2	Acetyl (K)	1309.6588	0.65878863	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.122	71.571	2	0.0048117	37909	160513_QHF_FH_JSI11Kac_5	65.842	52.072			0.38913	0.39038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38913	0.39038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8086700	5836800	2249900	0	0	0	0	0	0	8086700	5836800	2249900	0	0	0	47740	5658	44941	287851	386013	386013	3520		1	
SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK	1	Unmodified	3233.5153	0.5153021	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	2.94		12	8						1	5	4	6	6	98.853	98.353	3;4	4.2451E-139	88082	160511_QHF_FH_JSI11i_3	272.35	257.7			1.0001	1.0115	12.903	21	9	Median	1.1824	1.0115	20.789	5	2	Median	0.8929	1.1008	5.9244	4	2	Median	1.0368	1.0026	10.372	6	2	Median	0.9645	0.98607	12.364	6	3	Median	4509500000	2689100000	1820400000	353650000	185720000	167930000	428210000	213660000	214550000	1204800000	640590000	564230000	2522800000	1649100000	873740000	47741	2094	44942	287852;287853;287854;287855;287856;287857;287858;287859;287860;287861;287862;287863;287864;287865;287866;287867;287868;287869;287870;287871;287872	386014;386015;386016;386017;386018;386019;386020;386021;386022;386023;386024;386025;386026;386027;386028;386029;386030;386031;386032;386033;386034;386035;386036;386037;386038;386039;386040;386041;386042;386043;386044;386045;386046;386047;386048;386049;386050;386051;386052;386053;386054;386055;386056;386057;386058;386059;386060	386014			47	
SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR	1	Acetyl (K)	3431.627	0.62697781	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		88.084	78.755	4	6.0735E-57	43895	160513_QHF_FH_JSI11Kac_6	168.96	161.39			0.46217	0.4387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46217	0.4387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231770000	154420000	77345000	0	0	0	0	0	0	231770000	154420000	77345000	0	0	0	47742	2094	44943	287873	386061	386061	2205		1	
SSFESSCPQQWIK	1	Unmodified	1582.7086	0.70859237	2905	Q5JTJ3	COA6	Cytochrome c oxidase assembly factor 6 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	57.346	56.516	2	4.0171E-06	51474	160511_QHF_FH_JSI12i_1	123.79	79.475			0.75289	0.80368	63.98	4	4	Median	NaN	NaN	NaN	0	0	Median	0.68741	0.83636	NaN	1	1	Median	0.8246	0.77227	NaN	1	1	Median	0.66187	0.70581	109.91	2	2	Median	216790000	143190000	73605000	0	0	0	21081000	13148000	7933600	50605000	26627000	23978000	145100000	103410000	41694000	47743	2905	44944	287874;287875;287876;287877	386062;386063;386064;386065	386064			4	
SSFEYGQVNHALAAAMR	0	Unmodified	1850.8734	0.87336628	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	63.966	63.664	3	4.3002E-11	56471	160511_QHF_FH_JSI11i_3	157.58	152.57			0.89123	0.85958	17.107	4	2	Median	1.1702	1.0185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87336	0.8073	21.023	2	2	Median	0.78286	0.78882	NaN	1	0	Median	265760000	150720000	115030000	23990000	10715000	13275000	0	0	0	159040000	92182000	66854000	82730000	47826000	34905000	47744	4398	44945	287878;287879;287880;287881;287882	386066;386067;386068;386069	386067			4	
SSFFIEPQKPVFPETR	1	Unmodified	1907.9781	0.97814893	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	73.844	73.182	3	0.00011566	65286	160511_QHF_FH_JSI11i_3	82.707	73.291			1.0297	0.99419	7.7331	5	1	Median	1.0926	0.98776	NaN	1	0	Median	0.76687	0.91718	11.469	2	0	Median	1.0505	0.99419	NaN	1	1	Median	1.0297	1.0298	NaN	1	0	Median	373120000	195210000	177910000	47477000	26970000	20507000	139640000	81856000	57786000	131650000	63293000	68360000	54352000	23092000	31260000	47745	4143	44946	287883;287884;287885;287886;287887	386070;386071;386072;386073;386074	386070			5	
SSFFSDR	0	Unmodified	844.37153	0.37153181	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.09		3	2						1	2	1	1	2	27.547	26.89	2	0.0010716	22972	160511_QHF_FH_JSI11i_3	124.89	121.03			0.98967	1.0196	5.3266	5	0	Median	1.1772	1.0248	NaN	1	0	Median	0.80579	1.0007	NaN	1	0	Median	1.0565	1.0298	NaN	1	0	Median	0.89752	0.96142	8.3122	2	0	Median	1798100000	886940000	911170000	278740000	138660000	140080000	325410000	175600000	149810000	520900000	234490000	286410000	673060000	338190000	334870000	47746	154	44947	287888;287889;287890;287891;287892;287893	386075;386076;386077;386078;386079;386080;386081;386082	386076			8	
SSFGAGK	1	Acetyl (Protein N-term)	694.3286	0.32860436	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	1	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.857	15.399	1	0.0011889	12636	160511_QHF_FH_JSI9i_1	41.502	41.502			1.0174	1.0327	10.773	4	0	Median	1.0099	0.84078	NaN	1	0	Median	0.9136	1.0439	NaN	1	0	Median	1.0648	1.0216	NaN	1	0	Median	1.025	1.0576	NaN	1	0	Median	475600000	234950000	240660000	116810000	61766000	55042000	118380000	63780000	54602000	105660000	52979000	52678000	134760000	56423000	78333000	47747	737	44948	287894;287895;287896;287897	386083;386084;386085;386086;386087	386087			5	
SSFGAGKTK	2	Acetyl (K);Acetyl (Protein N-term)	965.48181	0.48181054	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	1	1	0	1				By MS/MS	11	0				1									1	34.906	26.346	2	0.050978	11383	160513_QHF_FH_JSI12Kacf_1	30.564	17.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47748	737	44949	287898	386088	386088			1	
SSFLANKQER	1	Acetyl (K)	1220.6149	0.61494998	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		40.347	30.257	2	0.011732	17417	160513_QHF_FH_JSI11Kac_5	65.347	46.076			1.2734	1.2221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2734	1.2221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2602700	1437200	1165500	0	0	0	0	0	0	2602700	1437200	1165500	0	0	0	47749	2621	44950	287899	386089	386089	2584		1	
SSFLASLNPK	1	Unmodified	1062.571	0.5709599	2554	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.896	56.648	2	0.0021567	48672	160511_QHF_FH_JSI12i_3	61.56	46.891			0.84177	0.84341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84177	0.84341	NaN	1	0	Median	28222000	16034000	12188000	0	0	0	0	0	0	0	0	0	28222000	16034000	12188000	47750	2554	44951	287900	386090	386090			1	
SSFLIMWR	0	Oxidation (M)	1054.527	0.52698659	4370	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.804	68.37	2	4.7199E-07	35780	160513_QHF_FH_JSI12Kac_6	140.98	112.77			0.9821	1.0703	11.114	4	0	Median	1.2826	1.0738	NaN	1	0	Median	0.97261	1.1569	NaN	1	0	Median	0.969	0.89057	NaN	1	0	Median	0.99168	1.0668	NaN	1	0	Median	499720000	227060000	272660000	131710000	49155000	82553000	159790000	76689000	83102000	59149000	26659000	32491000	149070000	74557000	74516000	47751	4370	44952	287901;287902;287903;287904	386091;386092;386093;386094;386095	386093		2462	5	
SSFLIMWR	0	Unmodified	1038.5321	0.53207197	4370	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.438	74.194	2	4.0848E-12	41825	160513_QHF_FH_JSI10Kac_6	160.91	113.07			0.98492	1.0422	13.486	4	0	Median	1.3925	1.2117	NaN	1	0	Median	0.94179	1.1202	NaN	1	0	Median	1.03	0.96956	NaN	1	0	Median	0.85388	0.90026	NaN	1	0	Median	1398500000	677630000	720910000	257990000	98889000	159100000	742660000	362660000	380000000	212100000	106790000	105320000	185780000	109290000	76487000	47752	4370	44952	287905;287906;287907;287908	386096;386097;386098;386099;386100;386101;386102	386102			7	
SSFLPEDEK	1	Unmodified	1050.487	0.4869555	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.082	33.692	2	0.0049632	30078	160511_QHF_FH_JSI11i_1	65.305	53.794			5.3848	7.1348	13.776	3	3	Plateau	NaN	NaN	NaN	0	0	Median	6.2344	7.2212	NaN	1	1	Median	7.3408	7.1348	NaN	1	1	Median	5.3848	5.6554	NaN	1	1	Median	508040000	67081000	440960000	0	0	0	206420000	20272000	186150000	144650000	18612000	126030000	156970000	28197000	128770000	47753	777	44953	287909;287910;287911	386103;386104;386105	386103			3	
SSFLQVFNNSPDESSYYR	0	Unmodified	2138.9545	0.95451296	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	82.474	81.963	2	3.533E-66	71125	160511_QHF_FH_JSI12i_3	236.87	223.19			0.94292	0.95107	16.703	5	2	Median	1.3582	1.1904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93083	0.89806	8.5806	2	1	Median	0.79754	0.85062	15.786	2	1	Median	150980000	71591000	79392000	33367000	13978000	19389000	0	0	0	71875000	34562000	37313000	45741000	23051000	22690000	47754	2674	44954	287912;287913;287914;287915;287916;287917;287918	386106;386107;386108;386109;386110;386111;386112;386113;386114;386115;386116	386115			11	
SSFLVDCSK	1	Unmodified	1041.4801	0.48009598	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.67	4.64	2	3					1				2	3	1	36.249	33.997	2	0.00079493	28910	160511_QHF_FH_JSI11i_2	73.985	54.198			1.2114	1.3243	22.353	6	3	Median	NaN	NaN	NaN	0	0	Median	1.305	1.5725	21.975	2	1	Median	1.3313	1.3027	20.236	3	1	Median	1.0322	1.1127	NaN	1	1	Median	300750000	123780000	176970000	0	0	0	98658000	39730000	58928000	162130000	69113000	93020000	39959000	14937000	25022000	47755	512	44955	287919;287920;287921;287922;287923;287924	386117;386118;386119;386120;386121;386122;386123	386121			7	
SSFNLGTIETK	1	Unmodified	1195.6085	0.60846762	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0			By MS/MS	By MS/MS	14	0							2					1	1	63.801	53.092	2	0.0023993	29402	160513_QHF_FH_JSI12Kac_4	70.977	56.77			1.0712	1.1508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0712	1.1508	NaN	1	0	Median	2657900	1244100	1413800	0	0	0	0	0	0	0	0	0	2657900	1244100	1413800	47756	1684	44956	287925;287926	386124;386125	386125			2	
SSFREEDNTYR	0	Unmodified	1402.6113	0.61132116	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		13.562	13.248	3	0.0038073	11068	160511_QHF_FH_JSI10i_2	37.613	26.401			0.97118	1.0329	12.032	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93472	1.1246	NaN	1	0	Median	1.0091	0.94862	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98772000	54034000	44738000	0	0	0	52667000	27549000	25117000	46106000	26485000	19621000	0	0	0	47757	369	44957	287927;287928	386126;386127;386128	386128			3	
SSFSESALEK	1	Acetyl (Protein N-term)	1125.519	0.51898391	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.728	48.048	2	2.3201E-05	43594	160511_QHF_FH_JSI12i_1	61.78	39.693			0.84227	0.84389	6.7889	4	0	Median	1.0407	0.86388	NaN	1	0	Median	0.64789	0.75862	NaN	1	0	Median	0.9078	0.88492	NaN	1	0	Median	0.78146	0.82436	NaN	1	0	Median	196810000	98242000	98571000	57273000	25146000	32127000	42183000	24572000	17612000	58283000	27941000	30342000	39073000	20583000	18490000	47758	4921	44958	287929;287930;287931;287932	386129;386130;386131;386132	386130			2	
SSFSFSSGIDQSPGMSPVPLREPMK	1	Unmodified	2667.2673	0.26727302	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			81.742	80.412	3	0.021193	67427	160511_QHF_FH_JSI10i_3	30.882	23.851			0.95706	0.94402	11.154	2	1	Median	1.2306	1.0215	NaN	1	0	Median	0.7443	0.87243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36596000	21143000	15454000	18861000	8691100	10170000	17735000	12451000	5284000	0	0	0	0	0	0	47759	681	44959	287933;287934	386133;386134;386135	386133			3	
SSFSHYSGLK	1	Unmodified	1111.5298	0.52982336	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		10	8						8	6	6	8	6	24.574	21.206	2;3	7.1932E-26	17070	160511_QHF_FH_JSI12i_3	218.48	202.59			0.8768	0.90912	22.299	24	2	Median	1.3193	1.0582	30.627	6	0	Median	0.85203	0.99363	11.949	6	0	Median	0.84384	0.79379	16.815	6	2	Median	0.83456	0.89609	13.319	6	0	Median	12986000000	6106900000	6879500000	1781900000	654690000	1127200000	2209200000	1021500000	1187700000	3471000000	1525900000	1945100000	5524300000	2904800000	2619400000	47760	3609	44960	287935;287936;287937;287938;287939;287940;287941;287942;287943;287944;287945;287946;287947;287948;287949;287950;287951;287952;287953;287954;287955;287956;287957;287958;287959;287960	386136;386137;386138;386139;386140;386141;386142;386143;386144;386145;386146;386147;386148;386149;386150;386151;386152;386153;386154;386155;386156;386157;386158;386159;386160;386161;386162;386163;386164;386165;386166;386167;386168;386169;386170;386171;386172;386173;386174;386175;386176;386177;386178;386179;386180;386181;386182;386183;386184;386185;386186;386187;386188;386189;386190;386191;386192;386193;386194;386195	386187			60	
SSFSHYSGLKHEDK	2	Acetyl (K)	1662.7638	0.76379906	3609	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	34.283	25.471	3;4	0.00036473	14385	160513_QHF_FH_JSI10Kac_6	68.919	61.88			0.63733	0.70836	92.622	3	0	Median	NaN	NaN	NaN	0	0	Median	1.599	1.8429	NaN	1	0	Median	0.29822	0.28916	NaN	1	0	Median	0.63733	0.70836	NaN	1	0	Median	53983000	28653000	25330000	0	0	0	22064000	5657500	16407000	21749000	16909000	4840000	10170000	6086600	4082900	47761	3609	44961	287961;287962;287963;287964	386196;386197;386198;386199;386200	386199	2894		5	
SSFSITR	0	Unmodified	796.40792	0.40791731	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	23.528	23.519	2	0.011468	19519	160511_QHF_FH_JSI12i_3	70.912	8.1982			1.1671	1.1375	18.022	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3418	1.2921	NaN	1	0	Median	1.0151	1.0014	NaN	1	0	Median	459980000	199500000	260480000	0	0	0	0	0	0	239610000	95433000	144180000	220370000	104070000	116300000	47762	5542	44962	287965;287966	386201	386201			1	
SSFSQHAR	0	Unmodified	918.43078	0.43077802	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		8	6						8	6	6	4	6	5.1622	2.1937	2;3	2.292E-23	1716	160513_QHF_FH_JSI10Kac_6	178.83	167.96			0.98329	0.97741	8.821	22	1	Median	1.2102	1.0054	7.1017	6	0	Median	0.7682	0.86303	6.0922	6	0	Linear	1.0543	1.0453	10.492	4	1	Median	0.92671	0.99353	10.837	6	0	Median	10695000000	5300000000	5395000000	5141300000	2182000000	2959300000	4647800000	2654900000	1992900000	509980000	254100000	255880000	395960000	209110000	186860000	47763	791	44963	287967;287968;287969;287970;287971;287972;287973;287974;287975;287976;287977;287978;287979;287980;287981;287982;287983;287984;287985;287986;287987;287988	386202;386203;386204;386205;386206;386207;386208;386209;386210;386211;386212;386213;386214;386215;386216;386217;386218;386219;386220;386221;386222;386223;386224;386225;386226;386227;386228;386229;386230;386231;386232;386233;386234	386234			33	
SSFTVDCSK	1	Unmodified	1029.4437	0.44371047	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3.17	4.41	4	1				1				1	2	2	1	21.844	19.691	2	1.9743E-10	16622	160511_QHF_FH_JSI9i_1	130.75	113.97			1.0708	1.212	38.021	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89093	1.065	NaN	1	0	Median	1.3018	1.2857	62.986	2	1	Median	1.2871	1.3795	NaN	1	0	Median	1028300000	506240000	522060000	0	0	0	223100000	120200000	102900000	431130000	217280000	213860000	374070000	168770000	205300000	47764	1192	44964	287989;287990;287991;287992;287993;287994	386235;386236;386237;386238;386239;386240	386239			6	
SSFTVQDLKPFTEYVFR	1	Unmodified	2063.0364	0.036392091	1492	P40189	IL6ST	Interleukin-6 receptor subunit beta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			100.9	100.73	3	9.233E-06	83381	160511_QHF_FH_JSI10i_3	94.882	76.726			0.93933	1.0977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93933	1.0977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44972000	27217000	17755000	0	0	0	44972000	27217000	17755000	0	0	0	0	0	0	47765	1492	44965	287995	386241	386241			1	
SSFVPSLFSK	1	Unmodified	1097.5757	0.57571092	1853	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	73.944	73.154	2	2.3056E-05	65148	160511_QHF_FH_JSI11i_3	98.044	88.456			1.1242	1.454	18.742	5	0	Linear	1.1242	0.91299	NaN	1	0	Median	0.90464	1.0773	17.1	2	0	Median	1.2989	1.2283	NaN	1	0	Median	1.4191	1.4264	NaN	1	0	Median	480300000	216110000	264190000	39345000	20645000	18700000	117220000	55207000	62017000	131860000	60380000	71477000	191870000	79881000	111990000	47766	1853	44966	287996;287997;287998;287999;288000	386242;386243;386244;386245;386246;386247;386248;386249;386250	386243			9	
SSFYPDGGDQETAK	1	Unmodified	1500.6369	0.63686721	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	32.867	28.765	2	1.4297E-09	26063	160511_QHF_FH_JSI12i_1	142.08	131.85			1.0725	1.0712	6.97	7	0	Median	1.2268	1.0156	NaN	1	0	Median	0.88084	1.0354	4.8099	2	0	Median	1.1124	1.0912	9.8164	2	0	Median	1.0818	1.1578	0.13102	2	0	Median	936980000	455480000	481510000	198330000	94876000	103460000	246790000	117360000	129430000	236410000	119520000	116890000	255450000	123720000	131730000	47767	5124	44967	288001;288002;288003;288004;288005;288006;288007	386251;386252;386253;386254;386255;386256;386257;386258;386259;386260;386261;386262;386263;386264;386265;386266;386267;386268	386256			18	
SSFYSLTSSNISK	1	Unmodified	1419.6882	0.6881745	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.44		3	2					1	2	1	1	4	2	55.013	52.682	2	9.4149E-06	27949	160513_QHF_FH_JSI9Kac_6	101.93	75.99			0.90808	1.0046	26.332	6	1	Median	NaN	NaN	NaN	0	0	Median	0.91609	1.1249	NaN	1	1	Median	0.90013	0.89728	22.248	3	0	Median	0.97039	1.0232	48.827	2	0	Median	181580000	89528000	92051000	0	0	0	27373000	15713000	11660000	90840000	43490000	47351000	63366000	30326000	33040000	47768	3765	44968	288008;288009;288010;288011;288012;288013;288014;288015	386269;386270;386271;386272;386273;386274;386275;386276;386277;386278	386276			10	
SSFYVNGLTLGGQK	1	Unmodified	1469.7514	0.75144346	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.55	8	8	8			1	6	8	8	10	13	13	11	71.119	65.908	2;3	5.1412E-156	58155	160511_QHF_FH_JSI11i_2	306.68	249.09			1.0237	0.9936	14.545	47	1	Median	1.1098	0.94767	5.7232	10	0	Median	0.84632	1.0136	10.983	13	1	Median	0.95026	0.92386	16.39	13	0	Median	1.0603	1.1288	9.2396	11	0	Median	17386000000	8601700000	8784800000	2901900000	1277900000	1624000000	4211600000	2173100000	2038500000	6275500000	3231400000	3044000000	3997500000	1919200000	2078300000	47769	876	44969	288016;288017;288018;288019;288020;288021;288022;288023;288024;288025;288026;288027;288028;288029;288030;288031;288032;288033;288034;288035;288036;288037;288038;288039;288040;288041;288042;288043;288044;288045;288046;288047;288048;288049;288050;288051;288052;288053;288054;288055;288056;288057;288058;288059;288060;288061;288062	386279;386280;386281;386282;386283;386284;386285;386286;386287;386288;386289;386290;386291;386292;386293;386294;386295;386296;386297;386298;386299;386300;386301;386302;386303;386304;386305;386306;386307;386308;386309;386310;386311;386312;386313;386314;386315;386316;386317;386318;386319;386320;386321;386322;386323;386324;386325;386326;386327;386328;386329;386330;386331;386332;386333;386334;386335;386336;386337;386338;386339;386340;386341;386342;386343;386344;386345;386346;386347;386348;386349;386350;386351;386352;386353;386354;386355;386356;386357;386358;386359;386360;386361;386362;386363;386364;386365;386366;386367;386368;386369;386370;386371;386372;386373;386374;386375;386376;386377;386378;386379;386380	386337			102	
SSGAASSAPGGGDGAEYK	1	Unmodified	1567.675	0.67504363	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	14.013	13.574	2	3.2489E-16	11199	160511_QHF_FH_JSI10i_1	160.84	154.46			0.98883	1.0913	12.104	5	2	Median	1.3146	1.0915	NaN	1	0	Median	0.90723	1.0913	NaN	1	0	Median	0.98883	0.96003	NaN	1	0	Median	1.0091	1.0316	21.776	2	2	Median	390620000	169640000	220980000	56989000	21678000	35312000	64837000	28730000	36107000	96626000	38089000	58537000	172170000	81148000	91023000	47770	4254	44970	288063;288064;288065;288066;288067	386381;386382;386383;386384;386385;386386;386387	386386			7	
SSGAGSTSDAYTVIQVGR	0	Unmodified	1754.8435	0.84350594	4514	Q9BXF6	RAB11FIP5	Rab11 family-interacting protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	50.079	49.413	2	2.4056E-16	44846	160511_QHF_FH_JSI12i_1	122.97	104.63			0.75037	0.76181	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75037	0.76181	NaN	1	1	Median	24547000	16120000	8427900	0	0	0	0	0	0	0	0	0	24547000	16120000	8427900	47771	4514	44971	288068;288069;288070;288071	386388;386389;386390;386391	386390			4	
SSGASVTTQPTEFK	1	Unmodified	1438.694	0.69398816	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.96	5					4				2	3	2	2	34.046	30.27	2	8.6671E-52	26872	160511_QHF_FH_JSI11i_1	214.04	148.7			1.0622	1.0576	16.563	8	3	Median	1.1032	0.90746	21.025	2	2	Median	0.87831	1.0212	30.917	2	1	Median	1.0569	1.046	2.1738	2	0	Median	1.0626	1.1343	2.7065	2	0	Median	681330000	326530000	354800000	200390000	84703000	115690000	149110000	74516000	74598000	167620000	79863000	87755000	164210000	87450000	76759000	47772	4538	44972	288072;288073;288074;288075;288076;288077;288078;288079;288080	386392;386393;386394;386395;386396;386397;386398;386399;386400;386401;386402;386403;386404;386405;386406	386393			15	
SSGCDVNLPGVNVK	1	Unmodified	1444.698	0.69802768	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	50.086	49.586	2	2.8165E-21	44880	160511_QHF_FH_JSI11i_1	172.21	145.17			0.68175	0.65177	34.838	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67461	0.80112	NaN	1	0	Median	0.68175	0.65177	NaN	1	0	Median	1.2464	1.2859	NaN	1	1	Median	167710000	94909000	72799000	0	0	0	43255000	28418000	14837000	72771000	45285000	27485000	51682000	21206000	30476000	47773	2286	44973	288081;288082;288083	386407;386408;386409;386410;386411	386408			5	
SSGDYSATFLPGLIPAEK	1	Unmodified	1851.9254	0.92544466	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	89.756	89.396	2;3	5.4085E-05	81463	160511_QHF_FH_JSI12i_1	80.522	71.568			0.5731	0.54808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5731	0.54808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10881000	7768000	3112600	0	0	0	0	0	0	10881000	7768000	3112600	0	0	0	47774	4140	44974	288084;288085	386412;386413	386413			2	
SSGEIVYCGQVFEK	1	Unmodified	1601.7396	0.73955814	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	1	3	3	55.251	54.627	2;3	1.8558E-135	49776	160511_QHF_FH_JSI12i_1	288.35	260.87			1.088	1.004	55.532	7	1	Median	1.1927	0.97522	NaN	1	0	Median	0.8599	1.004	NaN	1	0	Median	0.84644	0.82757	4.5159	2	0	Median	1.1817	1.2432	71.898	3	1	Median	872260000	450210000	422050000	124440000	56105000	68332000	238890000	128490000	110400000	219110000	123050000	96065000	289820000	142570000	147250000	47775	2190	44975	288086;288087;288088;288089;288090;288091;288092;288093	386414;386415;386416;386417;386418;386419;386420;386421;386422;386423;386424;386425;386426;386427;386428;386429;386430;386431;386432	386421			19	
SSGFGLEFNSFQHQLR	0	Unmodified	1852.8856	0.88564553	2695	Q15650	TRIP4	Activating signal cointegrator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		72.04	71.316	3	0.008736	59959	160511_QHF_FH_JSI10i_3	45.723	35.442			1.3874	1.4061	19.012	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4108	1.6084	NaN	1	1	Median	1.3644	1.2292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48514000	21799000	26714000	0	0	0	14004000	5372300	8631500	34510000	16427000	18083000	0	0	0	47776	2695	44976	288094;288095	386433;386434	386434			1	
SSGFLNLIK	1	Unmodified	977.55458	0.55458155	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	71.21	70.454	2	3.1361E-06	62530	160511_QHF_FH_JSI11i_3	123.98	81.114			0.98217	1.0101	14.486	7	0	Median	1.0809	0.93174	NaN	1	0	Median	0.73109	0.85819	25.841	2	0	Median	1.0849	1.042	6.4851	2	0	Median	0.96845	1.0441	4.6907	2	0	Median	421120000	211040000	210080000	23766000	12473000	11293000	76747000	43640000	33106000	123570000	59027000	64538000	197040000	95901000	101140000	47777	3003	44977	288096;288097;288098;288099;288100;288101;288102	386435;386436;386437;386438	386435			3	
SSGFPVHLLPDIAEPGSVAGR	0	Unmodified	2105.0906	0.090552927	5303	Q9UHJ6	SHPK	Sedoheptulokinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	87.39	87.325	3	0.00012922	75768	160511_QHF_FH_JSI12i_3	56.055	46.801			0.81947	0.82781	9.8934	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92982	0.8878	NaN	1	0	Median	0.72222	0.77188	NaN	1	1	Median	38777000	26528000	12249000	0	0	0	0	0	0	18238000	11067000	7170700	20539000	15461000	5078100	47778	5303	44978	288103;288104	386439;386440;386441	386441			3	
SSGFSGK	1	Unmodified	668.31295	0.3129543	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.2834	5.0442	2	0.0466	3015	160511_QHF_FH_JSI10i_1	44.117	44.117			1.0893	1.3258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0893	1.3258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	275520000	119180000	156330000	0	0	0	275520000	119180000	156330000	0	0	0	0	0	0	47779	3216	44979	288105	386442	386442			1	
SSGFSGKGFK	2	Acetyl (K)	1042.5084	0.50835964	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	1.08						3	3	4	3	2	4	3	4	40.836	31.286	2	4.232E-17	17940	160513_QHF_FH_JSI10Kac_4	163.64	135.46			0.90603	1.0297	23.28	12	0	Median	0.93681	0.79558	44.377	2	0	Median	0.90856	1.0899	7.662	3	0	Plateau	0.87941	0.93547	14.628	3	0	Plateau	0.74099	0.81445	17.605	4	0	Median	409510000	207060000	202450000	63600000	29658000	33942000	99908000	51345000	48562000	101080000	49332000	51749000	144920000	76722000	68201000	47780	3216	44980	288106;288107;288108;288109;288110;288111;288112;288113;288114;288115;288116;288117;288118	386443;386444;386445;386446;386447;386448;386449;386450;386451;386452;386453;386454;386455;386456;386457;386458;386459	386444	2799		16	
SSGFSGKGFKFDETEQALANER	2	Acetyl (K)	2446.1401	0.14008189	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	75.439	66.049	3	6.5669E-47	34665	160513_QHF_FH_JSI12Kac_6	176.84	156.22			1.3113	1.4161	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3113	1.4161	NaN	1	0	Median	35898000	8816300	27082000	0	0	0	0	0	0	13101000	0	13101000	22797000	8816300	13981000	47781	3216	44981	288119;288120	386460;386461;386462	386461	2799		3	
SSGFSGKGFKFDETEQALANERK	3	Acetyl (K)	2574.235	0.23504491	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	1	0	0	3	By matching		By matching	By MS/MS	16	0									3	1		1	1	71.285	62.063	4	9.0169E-12	32523	160513_QHF_FH_JSI12Kac_6	100.79	87.465			0.95735	1.027	24.406	3	0	Plateau	1.8439	1.5688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.0289	NaN	1	0	Median	0.95735	1.027	NaN	1	0	Median	97736000	43246000	54491000	26263000	9460400	16803000	0	0	0	28696000	14586000	14111000	42776000	19199000	23577000	47782	3216	44982	288121;288122;288123	386463	386463	2799		1	
SSGGFVWACK	1	Unmodified	1097.4964	0.49641475	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			44.952	43.987	2	0.017273	38589	160511_QHF_FH_JSI10i_2	50.04	36.271			1.6107	1.9265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6107	1.9265	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18174000	5853000	12321000	0	0	0	18174000	5853000	12321000	0	0	0	0	0	0	47783	1635	44983	288124	386464	386464			1	
SSGGGGWADPR	0	Unmodified	1045.4577	0.45772105	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		16.354	16.169	2	0.0020729	13679	160511_QHF_FH_JSI10i_1	58.916	52.325			1.2171	1.2945	68.042	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67741	0.80011	NaN	1	0	Median	2.1866	2.0944	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95739000	46354000	49385000	0	0	0	58691000	32329000	26363000	37047000	14025000	23022000	0	0	0	47784	3203	44984	288125;288126	386465	386465			1	
SSGGGYSGDR	0	Unmodified	941.38389	0.38388741	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	3.1535	2.8953	2	0.0025866	1626	160511_QHF_FH_JSI12i_1	58.981	29.832			1.1588	1.1244	30.117	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1588	1.1244	NaN	1	0	Median	1.2125	1.2613	41.545	2	0	Median	162210000	72042000	90164000	0	0	0	0	0	0	76527000	32554000	43973000	85678000	39487000	46191000	47785	3889	44985	288127;288128;288129	386466;386467;386468;386469	386468			4	
SSGGREDLESSGLQR	0	Unmodified	1576.7441	0.74412625	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							2	1	5	4	17.799	17.373	2;3	2.1899E-10	14694	160511_QHF_FH_JSI10i_2	123.63	108.67			0.94958	0.95875	8.8539	12	0	Median	1.2545	1.0842	0.84628	2	0	Median	0.90369	1.1099	NaN	1	0	Median	0.95562	0.93969	5.615	5	0	Median	0.88008	0.92564	7.1337	4	0	Median	2348800000	1202500000	1146300000	459000000	223690000	235310000	486840000	242490000	244340000	1045600000	546800000	498800000	357340000	189480000	167860000	47786	5362	44986	288130;288131;288132;288133;288134;288135;288136;288137;288138;288139;288140;288141	386470;386471;386472;386473;386474;386475;386476;386477;386478;386479;386480;386481;386482;386483;386484;386485;386486	386483			16	
SSGGSEHSTEGSVSLGDGQLNR	0	Unmodified	2159.9679	0.96793119	3206	Q71RC2	LARP4	La-related protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	28.928	28.175	3	1.023E-15	23581	160511_QHF_FH_JSI11i_2	132.14	123.14			0.98416	1.0411	8.5493	6	0	Median	1.3017	1.1199	NaN	1	0	Median	0.77406	0.93055	3.2397	2	0	Median	1.0333	1.0212	NaN	1	0	Median	0.9916	1.09	3.7652	2	0	Median	275690000	135670000	140020000	44720000	18974000	25746000	81008000	42389000	38619000	54605000	23944000	30661000	95357000	50367000	44989000	47787	3206	44987	288142;288143;288144;288145;288146;288147;288148;288149	386487;386488;386489;386490;386491;386492;386493;386494;386495;386496;386497;386498;386499;386500;386501;386502	386500			16	
SSGHSSSELSPDAVEK	1	Unmodified	1615.7326	0.73255851	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	20.522	20.145	2;3	5.4571E-11	17319	160511_QHF_FH_JSI10i_1	102.66	80.463			1.3851	1.5402	0.76802	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3155	1.5319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4584	1.5486	NaN	1	0	Median	111920000	45462000	66462000	0	0	0	50872000	21880000	28991000	0	0	0	61053000	23582000	37471000	47788	5474	44988	288150;288151;288152;288153	386503;386504;386505	386504			3	
SSGIHVALVTGGNK	1	Acetyl (Protein N-term)	1380.7361	0.73612775	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.26	5	3	3		1	2	3	4	1	3	8	5	6	56.78	51.411	2;3	7.4654E-66	43890	160511_QHF_FH_JSI12i_2	72.2	15.942			0.97979	1.0139	129.51	20	5	Median	1.0336	0.84398	176.1	3	1	Median	0.86407	1.0209	154.39	7	3	Median	0.98074	0.98218	9.0501	4	0	Median	1.0323	1.1604	102.32	6	1	Median	1843700000	971330000	872340000	246650000	156560000	90089000	542650000	276130000	266520000	503690000	266840000	236850000	550680000	271800000	278880000	47789	1092	44989	288154;288155;288156;288157;288158;288159;288160;288161;288162;288163;288164;288165;288166;288167;288168;288169;288170;288171;288172;288173;288174;288175	386506;386507;386508;386509;386510;386511;386512;386513;386514;386515;386516;386517;386518;386519;386520;386521;386522;386523;386524;386525;386526;386527;386528;386529;386530;386531;386532;386533;386534;386535;386536;386537	386509			32	
SSGISSQNSSTSDGDR	0	Unmodified	1583.6659	0.66593551	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	7.4187	5.6867	2	2.9485E-40	4559	160511_QHF_FH_JSI9i_1	205.96	187.63			1.0066	1.0409	12.024	5	0	Median	1.2641	1.0448	NaN	1	0	Median	0.73934	0.88862	NaN	1	0	Median	1.044	1.0141	19.994	2	0	Median	1.0066	1.0409	NaN	1	0	Median	227450000	120410000	107030000	53821000	25149000	28672000	64748000	36030000	28717000	56334000	30098000	26236000	52545000	29136000	23409000	47790	5113	44990	288176;288177;288178;288179;288180	386538;386539;386540;386541;386542;386543;386544;386545;386546;386547	386546			10	
SSGISSQNSSTSDGDRSVSSQSSSSVSSQVTTAGSGK	1	Unmodified	3522.579	0.57897758	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	1				By MS/MS	1	0	2												2	30.809	30.241	3	1.1765E-10	27179	160511_QHF_FH_JSI12i_1	67.198	62.484			0.86471	0.87746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86471	0.87746	NaN	1	1	Median	18219000	4581600	13637000	0	0	0	0	0	0	0	0	0	18219000	4581600	13637000	47791	5113	44991	288181;288182	386548;386549	386549			2	
SSGLESSEAR	0	Unmodified	1021.4676	0.46761704	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	7.8135	7.6369	2	0.00023715	5275	160511_QHF_FH_JSI11i_1	80.755	59.455			0.8049	0.86643	2.8072	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74119	0.8838	NaN	1	1	Median	0.87408	0.8494	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	164610000	94541000	70073000	0	0	0	76931000	44618000	32314000	87682000	49923000	37759000	0	0	0	47792	3555	44992	288183;288184;288185	386550;386551;386552;386553	386550			4	
SSGLPNIPVQTISR	0	Unmodified	1467.8045	0.80454166	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.18	4	4	3			2	3	4		4	6	4	6	68.327	63.788	2	8.2423E-10	58452	160511_QHF_FH_JSI12i_1	147.72	140.7			0.9361	0.94795	9.8472	18	0	Median	1.1543	0.96769	14.593	4	0	Median	0.78079	0.91011	5.8881	4	0	Median	0.97508	0.94795	7.9732	4	0	Median	0.9361	1.0014	10.109	6	0	Median	5141000000	2664400000	2476600000	1022100000	471830000	550310000	1265900000	741650000	524250000	1540400000	760740000	779620000	1312500000	690150000	622400000	47793	793	44993	288186;288187;288188;288189;288190;288191;288192;288193;288194;288195;288196;288197;288198;288199;288200;288201;288202;288203;288204;288205	386554;386555;386556;386557;386558;386559;386560;386561;386562;386563;386564;386565;386566;386567;386568;386569;386570;386571;386572;386573;386574;386575;386576;386577;386578;386579;386580;386581;386582;386583;386584;386585;386586;386587;386588;386589	386559			36	
SSGLTAVWVAR	0	Unmodified	1145.6193	0.61930707	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS			15	0								1			1			67.858	57.183	2	0.005762	28768	160513_QHF_FH_JSI10Kac_5	66.568	51.186			0.81377	0.96763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81377	0.96763	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4603100	2590100	2013000	0	0	0	4603100	2590100	2013000	0	0	0	0	0	0	47794	1805	44994	288206	386590	386590			1	
SSGLVQR	0	Unmodified	745.40825	0.40825167	4717	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	8.2296	7.7976	2	0.014526	5804	160511_QHF_FH_JSI10i_2	66.087	23.858			0.86261	1.0489	17.67	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85376	1.0489	NaN	1	0	Median	0.86261	0.86482	NaN	1	0	Median	1.1095	1.2308	NaN	1	0	Median	337250000	169610000	167640000	0	0	0	89508000	49822000	39687000	143370000	68483000	74886000	104370000	51307000	53063000	47795	4717	44995	288207;288208;288209	386591	386591			1	
SSGMPTDQESLSSGDAVLQR	0	Unmodified	2063.943	0.94296199	2309	Q12802	AKAP13	A-kinase anchor protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	53.18	52.512	2;3	1.0281E-13	46655	160511_QHF_FH_JSI9i_1	136.17	122.2			0.89786	1.0215	20.036	3	3	Plateau	1.1916	0.99449	NaN	1	1	Median	0.89786	1.0215	NaN	1	1	Median	0.7385	0.71293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68214000	38676000	29538000	23551000	8629500	14922000	25257000	16471000	8785500	19406000	13575000	5830400	0	0	0	47796	2309	44996	288210;288211;288212;288213;288214	386592;386593;386594;386595;386596	386596			5	
SSGNAATSGNAATK	1	Unmodified	1235.5742	0.57420737	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	2	3	1	5.1447	1.8471	2	3.5982E-41	2625	160511_QHF_FH_JSI12i_1	210.93	162.64			1.0073	0.99377	25.523	7	1	Median	1.0249	0.83533	NaN	1	0	Median	0.71336	0.81956	49.724	2	1	Median	1.2549	1.2254	20.048	3	0	Plateau	0.97889	0.9966	NaN	1	0	Median	563740000	265740000	298010000	132840000	56517000	76322000	166400000	76749000	89656000	131770000	62854000	68919000	132720000	69615000	63109000	47797	1724	44997	288215;288216;288217;288218;288219;288220;288221	386597;386598;386599;386600;386601;386602;386603;386604	386600			8	
SSGNAKIGHPAPNFK	2	Acetyl (K);Acetyl (Protein N-term)	1607.8056	0.80560429	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	50.569	40.676	2	0.00013159	22689	160513_QHF_FH_JSI11Kac_3	45.359	35.672			0.42556	0.45771	78.095	6	0	Median	NaN	NaN	NaN	0	0	Median	1.4008	1.6582	8.166	2	0	Median	0.32591	0.31752	11.959	2	0	Median	0.42556	0.45771	11.437	2	0	Median	32867000	21238000	11629000	0	0	0	8317800	2897400	5420400	19182000	14711000	4471400	5367000	3629400	1737600	47798	2249	44998	288222;288223;288224;288225;288226;288227	386605;386606;386607;386608;386609;386610	386606	2348;2350		6	
SSGNSSSSGSGSGSTSAGSSSPGAR	0	Unmodified	2101.8744	0.87442473	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	5.44	5				6	3				1	5	4	4	5.7705	0.99228	2;3	0	3035	160511_QHF_FH_JSI11i_1	548.91	543.18			1.0639	1.0634	22.022	14	1	Median	1.0793	0.89177	NaN	1	0	Median	0.67353	0.78979	13.55	5	0	Median	1.1563	1.1146	9.0852	4	0	Median	1.0671	1.1303	28.357	4	1	Median	3196500000	1681200000	1515300000	567080000	270480000	296610000	968080000	585700000	382370000	746460000	361050000	385410000	914850000	463980000	450870000	47799	2307	44999	288228;288229;288230;288231;288232;288233;288234;288235;288236;288237;288238;288239;288240;288241	386611;386612;386613;386614;386615;386616;386617;386618;386619;386620;386621;386622;386623;386624;386625;386626;386627;386628;386629	386611			19	
SSGNSSSSGSGSGSTSAGSSSPGARR	0	Unmodified	2257.9755	0.97553576	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	1	By MS/MS				15	0								1		1				4.9963	-4.4388	3	0.0098897	1488	160513_QHF_FH_JSI9Kac_5	35.628	22.591			1.1461	0.93631	NaN	1	0	Median	1.1461	0.93631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6002900	2925000	3077900	6002900	2925000	3077900	0	0	0	0	0	0	0	0	0	47800	2307	45000	288242	386630	386630			1	
SSGPGGQNVNK	1	Unmodified	1043.4996	0.49958587	2514	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.8347	2.535	2	4.6621E-23	3278	160511_QHF_FH_JSI12i_1	172.59	124.75			0.75073	0.84295	9.5534	7	0	Median	1.0589	0.88099	NaN	1	0	Median	0.68512	0.81025	13.773	2	0	Median	0.78981	0.77436	14.827	2	0	Median	0.75916	0.81266	5.1748	2	0	Median	956290000	528800000	427490000	203540000	104880000	98668000	256670000	147710000	108970000	260320000	149340000	110980000	235750000	126870000	108880000	47801	2514	45001	288243;288244;288245;288246;288247;288248;288249	386631;386632;386633;386634;386635;386636;386637;386638;386639	386632			9	
SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK	1	Oxidation (M)	3718.7129	0.71290906	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	36.743	36.176	3;4	2.563E-36	32042	160511_QHF_FH_JSI11i_1	104.31	100.64			1.1442	1.0871	15.692	9	2	Median	1.2585	1.0434	5.5373	2	0	Median	0.80075	0.91201	29.314	2	1	Median	1.1442	1.1106	4.2444	3	1	Median	1.131	1.1783	16.122	2	0	Median	602420000	299020000	303400000	93614000	41088000	52526000	119780000	75147000	44630000	199480000	83033000	116450000	189550000	99753000	89798000	47802	2536	45002	288250;288251;288252;288253;288254;288255;288256;288257;288258	386640;386641;386642;386643;386644;386645;386646;386647;386648;386649;386650;386651;386652;386653;386654;386655;386656	386641		2002	17	
SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK	1	Unmodified	3702.718	0.71799444	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	41.133	40.522	3;4;5	8.824E-213	35872	160511_QHF_FH_JSI9i_1	297.98	297.98			1.0418	0.99813	7.0938	9	1	Median	1.1082	0.91067	2.3076	2	0	Median	0.80729	0.95884	0.17183	2	0	Median	1.0604	1.0858	5.303	3	1	Plateau	0.98668	1.0349	1.9653	2	0	Median	4629400000	2321500000	2307800000	804850000	362570000	442280000	990690000	575460000	415240000	1499500000	723590000	775900000	1334300000	659920000	674420000	47803	2536	45002	288259;288260;288261;288262;288263;288264;288265;288266;288267	386657;386658;386659;386660;386661;386662;386663;386664;386665;386666;386667;386668;386669;386670;386671;386672;386673;386674;386675;386676;386677;386678;386679;386680;386681;386682;386683;386684;386685;386686;386687;386688;386689;386690;386691	386691			35	
SSGPPSYFIK	1	Unmodified	1081.5444	0.5444108	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.833	44.857	2	1.3477E-05	38556	160511_QHF_FH_JSI11i_2	101.9	65.195			1.0868	1.1756	8.647	4	1	Median	1.446	1.2495	NaN	1	0	Median	1.0711	1.3004	NaN	1	1	Median	1.1027	1.106	NaN	1	0	Median	0.98983	1.0951	NaN	1	0	Median	321650000	155450000	166200000	48999000	19151000	29848000	62662000	34016000	28647000	107870000	52266000	55602000	102120000	50015000	52104000	47804	4892	45003	288268;288269;288270;288271	386692;386693;386694;386695;386696;386697	386696			6	
SSGPTSLFAVTVAPPGAR	0	Unmodified	1713.905	0.90498399	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.51	8	8	8				3	9	5	10	11	11	9	80.316	76.007	2;3	4.1863E-190	39293	160513_QHF_FH_JSI11Kac_6	308.74	269.96			1.0233	1.0272	11.387	40	2	Median	1.1096	0.93673	16.317	10	0	Median	0.88443	1.0441	6.9826	11	2	Median	1.1335	1.1007	8.6992	10	0	Median	0.9068	1.0036	9.0566	9	0	Median	10173000000	5177100000	4996200000	1502600000	700280000	802360000	2643600000	1421600000	1221900000	3415400000	1671700000	1743700000	2611700000	1383500000	1228200000	47805	2161	45004	288272;288273;288274;288275;288276;288277;288278;288279;288280;288281;288282;288283;288284;288285;288286;288287;288288;288289;288290;288291;288292;288293;288294;288295;288296;288297;288298;288299;288300;288301;288302;288303;288304;288305;288306;288307;288308;288309;288310;288311;288312	386698;386699;386700;386701;386702;386703;386704;386705;386706;386707;386708;386709;386710;386711;386712;386713;386714;386715;386716;386717;386718;386719;386720;386721;386722;386723;386724;386725;386726;386727;386728;386729;386730;386731;386732;386733;386734;386735;386736;386737;386738;386739;386740;386741;386742;386743;386744;386745;386746;386747;386748;386749;386750;386751;386752;386753;386754;386755;386756;386757;386758;386759;386760;386761;386762;386763;386764;386765;386766;386767;386768;386769;386770;386771;386772;386773;386774;386775;386776;386777;386778;386779;386780;386781;386782;386783;386784	386727			87	
SSGPWNK	1	Unmodified	774.36605	0.3660525	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			12.741	12.184	2	0.034316	9912	160511_QHF_FH_JSI10i_2	51.456	33.608			0.89273	1.0905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89273	1.0905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125020000	65529000	59488000	0	0	0	125020000	65529000	59488000	0	0	0	0	0	0	47806	5383	45005	288313	386785	386785			1	
SSGPYGGGGQYFAK	1	Unmodified	1374.6204	0.62042929	936	P09651;Q32P51	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.54	4	7	4				3	5	4	6	6	8	7	39.45	34.627	2;3	2.829E-66	29639	160511_QHF_FH_JSI11i_2	237.93	227.41			1.0631	1.0418	16.766	27	3	Median	1.1308	0.95562	12.651	6	1	Median	0.90093	1.0677	14.253	6	0	Median	1.1244	1.1249	19.57	8	1	Median	0.9416	1.0418	12.744	7	1	Median	23448000000	10693000000	12755000000	4221300000	1726300000	2495000000	6018100000	3029300000	2988700000	7648300000	3242800000	4405400000	5560500000	2694600000	2865900000	47807	936	45006	288314;288315;288316;288317;288318;288319;288320;288321;288322;288323;288324;288325;288326;288327;288328;288329;288330;288331;288332;288333;288334;288335;288336;288337;288338;288339;288340	386786;386787;386788;386789;386790;386791;386792;386793;386794;386795;386796;386797;386798;386799;386800;386801;386802;386803;386804;386805;386806;386807;386808;386809;386810;386811;386812;386813;386814;386815;386816;386817;386818;386819;386820;386821;386822;386823;386824;386825;386826;386827;386828;386829;386830;386831;386832;386833;386834;386835;386836;386837;386838;386839;386840;386841;386842;386843;386844;386845;386846;386847;386848;386849;386850;386851;386852;386853;386854;386855;386856;386857;386858;386859	386833			74	
SSGPYGGGGQYFAKPR	1	Acetyl (K)	1669.7849	0.78486885	936	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	1.01						4	7	9	7	4	9	8	6	57.677	47.522	2;3	9.3172E-121	25176	160513_QHF_FH_JSI9Kac_5	270.2	260.55			0.89714	0.957	116.46	26	2	Median	1.1359	0.98021	3.0259	4	0	Median	0.85639	1.0068	5.8764	8	0	Median	0.91754	0.89068	219.63	8	2	Median	0.88946	0.95419	4.4897	6	0	Median	2568100000	1347800000	1220300000	367840000	171720000	196130000	751720000	404670000	347040000	887320000	474910000	412410000	561220000	296480000	264740000	47808	936	45007	288341;288342;288343;288344;288345;288346;288347;288348;288349;288350;288351;288352;288353;288354;288355;288356;288357;288358;288359;288360;288361;288362;288363;288364;288365;288366;288367	386860;386861;386862;386863;386864;386865;386866;386867;386868;386869;386870;386871;386872;386873;386874;386875;386876;386877;386878;386879;386880;386881;386882;386883;386884;386885;386886;386887;386888;386889;386890;386891;386892;386893;386894;386895;386896;386897;386898;386899;386900	386861	699		39	
SSGQPVTFTDIFGMLIGETLIHNR	0	Unmodified	2632.3319	0.33192219	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.77		2	1						4	2	2	2	1	101.33	96.496	3	1.4423E-150	51959	160513_QHF_FH_JSI11Kac_6	270.71	253.34			1.1679	1.1593	11.476	7	1	Median	1.4952	1.2657	12.413	2	1	Median	0.93576	1.1373	9.8021	2	0	Median	1.1063	1.035	9.0821	2	0	Median	1.1679	1.2348	NaN	1	0	Median	2511800000	1194500000	1317300000	442680000	186780000	255910000	1604400000	796830000	807550000	189090000	89476000	99618000	275690000	121420000	154270000	47809	1604	45008	288368;288369;288370;288371;288372;288373;288374	386901;386902;386903;386904;386905;386906;386907	386902			7	
SSGSALTVWGTGNPR	0	Unmodified	1488.7321	0.732105	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	6.19		4	3					3	1	2	3	4	2	52.341	48.012	2	1.0442E-29	42422	160511_QHF_FH_JSI11i_3	187.58	172.6			0.89751	1.012	20.441	11	2	Median	1.2273	1.0527	5.5699	2	1	Median	0.84373	1.0375	12.015	3	0	Median	0.9309	0.92745	16.1	4	1	Median	0.71053	0.74418	38.806	2	0	Median	462040000	259720000	202320000	61269000	30943000	30326000	110900000	60184000	50716000	144510000	74463000	70048000	145360000	94125000	51231000	47810	2460	45009	288375;288376;288377;288378;288379;288380;288381;288382;288383;288384;288385	386908;386909;386910;386911;386912;386913;386914;386915;386916;386917;386918;386919;386920;386921	386908			14	
SSGSEGSSPNWLQALK	1	Unmodified	1646.79	0.79001381	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	68.683	67.919	2	5.2383E-36	60316	160511_QHF_FH_JSI10i_2	169.89	150.93			0.86956	0.80126	66.109	4	2	Median	0.90502	0.77306	NaN	1	0	Median	1.7919	2.0983	NaN	1	1	Median	0.83549	0.83049	NaN	1	0	Median	0.37508	0.42303	NaN	1	1	Median	237480000	143770000	93707000	39076000	19836000	19240000	57947000	25052000	32894000	54111000	30742000	23369000	86343000	68138000	18204000	47811	4581	45010	288386;288387;288388;288389;288390;288391	386922;386923;386924;386925;386926;386927;386928;386929;386930;386931	386931			10	
SSGSHLVFVPSLR	0	Unmodified	1384.7463	0.7462985	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	3	1	2	63.811	58.161	3	0.00015447	47739	160511_QHF_FH_JSI9i_3	69.602	67.159			0.65741	0.62616	35.723	7	5	Median	0.8793	0.71203	9.5386	3	3	Median	0.48086	0.56581	NaN	1	0	Median	0.65741	0.62616	NaN	1	0	Median	0.33651	0.36226	37.546	2	2	Median	226950000	137900000	89050000	143750000	80927000	62824000	36122000	23769000	12353000	17292000	9994700	7297200	29784000	23208000	6576100	47812	2510	45011	288392;288393;288394;288395;288396;288397;288398;288399;288400	386932;386933;386934;386935;386936;386937;386938;386939;386940	386936			9	
SSGSPYGGGYGSGGGSGGYGSR	0	Unmodified	1909.7827	0.7826966	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	3.3	4	5	3				1			2	3	4	4	24.967	23.63	2	1.941E-71	20158	160511_QHF_FH_JSI9i_2	238.32	230.25			1.1298	1.0705	53.89	12	5	Median	1.212	1.0095	1.504	2	0	Median	1.1976	1.4235	74.229	3	1	Median	1.0877	1.0762	8.8881	3	1	Median	0.83964	0.91558	68.157	4	3	Median	1362500000	475560000	886950000	166820000	77061000	89763000	370000000	89483000	280520000	315250000	134310000	180940000	510430000	174710000	335720000	47813	1763	45012	288401;288402;288403;288404;288405;288406;288407;288408;288409;288410;288411;288412;288413	386941;386942;386943;386944;386945;386946;386947;386948;386949;386950;386951;386952;386953;386954;386955;386956;386957;386958;386959;386960	386955			20	
SSGTASSVAFTPLQGLEIVNPQAAEK	1	Unmodified	2601.3286	0.32861095	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	100.24	100.12	3	6.5055E-14	90800	160511_QHF_FH_JSI12i_1	86.856	79.235			0.85704	0.85465	15.375	4	0	Median	1.0855	0.92695	NaN	1	0	Median	0.57984	0.65493	NaN	1	0	Median	0.86012	0.82784	NaN	1	0	Median	0.85396	0.88232	NaN	1	0	Median	184850000	97926000	86929000	32331000	14315000	18016000	30073000	19014000	11059000	48320000	28095000	20225000	74130000	36502000	37628000	47814	3803	45013	288414;288415;288416;288417	386961;386962;386963;386964;386965;386966	386963			6	
SSGTNFQGLPSK	1	Unmodified	1221.599	0.59896556	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1				2	1	1	32.008	31.626	2	2.0307E-05	28199	160511_QHF_FH_JSI11i_1	174.23	123.03			0.88841	1.0421	9.0578	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.88841	1.0421	NaN	1	1	Median	1.0601	1.0414	NaN	1	1	Median	0.88115	0.89047	NaN	1	1	Median	364650000	167440000	197210000	0	0	0	122490000	61544000	60947000	127940000	56031000	71910000	114220000	49869000	64351000	47815	3029	45014	288418;288419;288420;288421	386967;386968;386969;386970	386967			4	
SSGVPVDGFYTEEVR	0	Unmodified	1640.7682	0.76821573	4394	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			60.384	59.635	2	0.00085198	53831	160511_QHF_FH_JSI10i_1	83.137	59.765			1.0349	1.029	3.2669	2	2	Median	1.2146	1.0055	NaN	1	1	Median	0.88169	1.053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	284360000	125560000	158800000	159620000	68793000	90830000	124730000	56765000	67968000	0	0	0	0	0	0	47816	4394	45015	288422;288423	386971;386972	386971			2	
SSGYPLTIEGFAYLWSGAR	0	Unmodified	2074.016	0.015991	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.508	88.099	2	9.957E-139	52353	160513_QHF_FH_JSI10Kac_6	271.08	248.84			1.0451	1.0558	3.7113	4	0	Median	1.1943	1.0122	NaN	1	0	Median	0.92719	1.1082	NaN	1	0	Median	1.101	1.0591	NaN	1	0	Median	0.99198	1.0525	NaN	1	0	Median	984170000	460500000	523670000	222240000	96467000	125770000	316600000	150560000	166040000	269500000	124780000	144720000	175830000	88699000	87136000	47817	4442	45016	288424;288425;288426;288427	386973;386974;386975;386976;386977	386977			5	
SSHKTFR	1	Acetyl (K)	903.45626	0.45626449	2034	P62891	RPL39	60S ribosomal protein L39	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	8.7364	0.57335	3	0.0064542	3181	160513_QHF_FH_JSI11Kac_6	66.073	43.836			0.083685	0.085577	163.91	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2878	0.27272	NaN	1	0	Median	0.024333	0.026853	NaN	1	1	Median	13169000	11046000	2122800	0	0	0	0	0	0	9929400	7953100	1976300	3239200	3092700	146560	47818	2034	45017	288428;288429	386978;386979	386978	2075		2	
SSHLEVSQASQLLQQQQQQQLR	0	Unmodified	2563.3103	0.31027554	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			59.292	58.361	3	5.7029E-07	51654	160511_QHF_FH_JSI10i_2	76.704	68.314			1.2305	1.2684	10.069	2	1	Median	1.5878	1.362	NaN	1	1	Median	0.95367	1.1812	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34796000	16184000	18612000	10865000	2977600	7887200	23932000	13206000	10725000	0	0	0	0	0	0	47819	513	45018	288430;288431	386980;386981	386981			2	
SSHSLPSEASSQPQVK	1	Unmodified	1667.8115	0.81147753	332	O43426	SYNJ1	Synaptojanin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.05	20.063	3	0.00021613	16313	160511_QHF_FH_JSI12i_3	43.592	37.688			0.93011	0.99307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93011	0.99307	NaN	1	0	Median	19017000	11279000	7737900	0	0	0	0	0	0	0	0	0	19017000	11279000	7737900	47820	332	45019	288432	386982;386983	386982			2	
SSHSNAYFYGFFK	1	Unmodified	1553.6939	0.69392858	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	3	4	4	69.542	64.549	2;3	1.8621E-76	34232	160513_QHF_FH_JSI9Kac_6	271.14	258.57			1.007	0.98693	8.4827	15	0	Median	1.2081	1.0038	11.487	4	0	Median	0.77004	0.9105	1.1857	3	0	Plateau	0.97596	0.9143	6.5643	4	0	Median	1.0038	1.0275	3.0098	4	0	Median	2393100000	1213600000	1179400000	526270000	249840000	276430000	526700000	280770000	245920000	622440000	318050000	304390000	717660000	364990000	352670000	47821	575	45020	288433;288434;288435;288436;288437;288438;288439;288440;288441;288442;288443;288444;288445;288446;288447	386984;386985;386986;386987;386988;386989;386990;386991;386992;386993;386994;386995;386996;386997;386998;386999;387000;387001;387002;387003;387004;387005;387006;387007;387008;387009;387010;387011;387012;387013;387014;387015;387016;387017	387003			34	
SSHYDELLAAEAR	0	Unmodified	1460.6896	0.68957148	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.04		8	2					5		3	4	5	3	45.43	40.784	2;3	1.5436E-30	35763	160511_QHF_FH_JSI10i_2	211.46	180.39			1.0228	1.1387	12.744	13	1	Median	1.4642	1.2418	2.7882	3	0	Median	0.99101	1.2364	4.8689	3	0	Plateau	1.0561	1.0741	14.455	4	1	Median	0.99439	1.107	15.334	3	0	Median	2997800000	1514300000	1483500000	463220000	194670000	268550000	829700000	416320000	413380000	1123700000	610390000	513290000	581180000	292930000	288250000	47822	3213	45021	288448;288449;288450;288451;288452;288453;288454;288455;288456;288457;288458;288459;288460;288461;288462	387018;387019;387020;387021;387022;387023;387024;387025;387026;387027;387028;387029;387030;387031;387032;387033;387034;387035;387036;387037;387038;387039;387040;387041;387042;387043;387044;387045;387046	387041			29	
SSIAGLLLK	1	Unmodified	900.56442	0.56441796	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	2	2	2	68.7	67.846	2	3.4941E-16	56695	160511_QHF_FH_JSI10i_3	170.66	125.58			0.95461	1.004	18.582	8	3	Median	1.1805	0.98186	29.993	2	1	Median	0.75557	0.90861	22.705	2	0	Median	1.0723	1.0461	14.387	2	1	Median	0.96075	1.0269	23.642	2	1	Median	1155900000	622490000	533390000	161570000	81783000	79789000	267830000	161960000	105870000	279440000	157010000	122430000	447040000	221740000	225300000	47823	2636	45022	288463;288464;288465;288466;288467;288468;288469;288470;288471	387047;387048;387049;387050;387051;387052;387053;387054;387055;387056;387057;387058;387059	387050			13	
SSIAGSEDAEPLAPPIKPIKPVTR	2	Acetyl (K)	2514.3694	0.36935355	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15	0								2			1	1		77.989	67.469	3	2.4861E-13	35866	160513_QHF_FH_JSI11Kac_5	103.31	93.053			0.8725	0.92687	38.716	2	0	Median	NaN	NaN	NaN	0	0	Median	0.61245	0.70489	NaN	1	0	Median	1.243	1.2187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13468000	5971200	7496900	0	0	0	3094400	1833800	1260500	10374000	4137400	6236300	0	0	0	47824	2204	45023	288472;288473	387060;387061	387061	2327		2	
SSIAGSSTWER	0	Unmodified	1179.552	0.55201537	4318	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	yes	yes	0	0	0	0			By MS/MS		8.5	6.5		1						1				2		31.477	26.385	2	0.0012102	22336	160511_QHF_FH_JSI11i_2	65.305	35.051			0.94809	0.92849	10.414	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94809	0.92849	10.414	2	1	Median	NaN	NaN	NaN	0	0	Median	23794000	12375000	11420000	0	0	0	0	0	0	23794000	12375000	11420000	0	0	0	47825	4318	45024	288474;288475	387062;387063;387064	387063			3	
SSIDSEPALVLGPLK	1	Unmodified	1524.8399	0.83992412	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	79.064	78.617	2;3	4.6353E-19	69810	160511_QHF_FH_JSI9i_1	217.22	206.94			0.79513	0.77582	18.695	10	6	Median	1.061	0.86876	15.587	2	1	Median	0.49408	0.58006	24.474	3	2	Plateau	0.88069	0.84479	12.457	2	1	Median	0.61353	0.63303	23.179	3	2	Plateau	869010000	493700000	375310000	156270000	82189000	74079000	264610000	168840000	95762000	162880000	84714000	78163000	285250000	157950000	127300000	47826	2638;2895	45025	288476;288477;288478;288479;288480;288481;288482;288483;288484;288485	387065;387066;387067;387068;387069;387070;387071;387072;387073;387074;387075;387076;387077;387078;387079;387080	387080			16	
SSIDYQYQLLR	0	Unmodified	1384.6987	0.69867961	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	60.75	59.852	2	0.0039946	51319	160511_QHF_FH_JSI12i_2	66.435	55.605			1.4457	1.5347	53.255	3	3	Median	NaN	NaN	NaN	0	0	Median	2.4879	3.0565	NaN	1	1	Median	1.0501	1.0718	NaN	1	1	Median	1.4457	1.5347	NaN	1	1	Median	66476000	28255000	38220000	0	0	0	14533000	6878200	7654700	27931000	10252000	17679000	24012000	11125000	12886000	47827	5277	45026	288486;288487;288488	387081;387082;387083	387081			3	
SSIGTGYDLSASTFSPDGR	0	Acetyl (Protein N-term)	1958.8858	0.88576469	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	79.069	78.597	2	3.8014E-42	69794	160511_QHF_FH_JSI9i_1	239.61	228.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47828	1266	45027	288489;288490;288491;288492	387084;387085;387086;387087;387088;387089;387090	387090			7	
SSIIFAGGDK	1	Unmodified	993.51311	0.51311067	3257	Q7Z3B1	NEGR1	Neuronal growth regulator 1	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	39.947	38.582	2	0.0010465	32950	160511_QHF_FH_JSI12i_2	73.233	40.393			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47829	3257	45028	288493;288494	387091;387092	387092			2	
SSILLDVKPWDDETDMAK	2	Oxidation (M)	2077.9878	0.98778692	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	75.487	74.954	2;3	1.7487E-05	65105	160511_QHF_FH_JSI12i_3	106.32	98.599			1.0618	1.1238	4.7818	6	0	Median	NaN	NaN	NaN	0	0	Median	0.9134	1.1232	NaN	1	0	Median	1.1525	1.16	3.44	2	0	Median	1.0031	1.0308	5.0738	3	0	Plateau	643840000	317210000	326620000	0	0	0	46025000	17987000	28038000	219430000	101090000	118350000	378380000	198140000	180240000	47830	1245	45029	288495;288496;288497;288498;288499;288500	387093;387094;387095;387096;387097;387098;387099;387100;387101;387102	387101		878	10	
SSILLDVKPWDDETDMAK	2	Unmodified	2061.9929	0.9928723	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.19	0.732	4	9	8							4	5	5	7	81.824	81.186	2;3	6.136E-23	70411	160511_QHF_FH_JSI12i_2	171.72	163.73			0.97881	0.98917	16.514	18	4	Median	1.0033	0.8564	15.396	3	0	Median	0.84899	1.0355	16.747	5	3	Median	1.0129	0.95253	20.182	5	1	Median	1.1144	1.1255	16.156	5	0	Median	4310200000	2083100000	2227100000	388670000	191530000	197140000	580450000	302200000	278250000	1465300000	712030000	753270000	1875800000	877380000	998450000	47831	1245	45029	288501;288502;288503;288504;288505;288506;288507;288508;288509;288510;288511;288512;288513;288514;288515;288516;288517;288518;288519;288520;288521	387103;387104;387105;387106;387107;387108;387109;387110;387111;387112;387113;387114;387115;387116;387117;387118;387119;387120;387121;387122;387123;387124;387125;387126;387127;387128;387129;387130;387131;387132;387133;387134;387135;387136;387137;387138;387139;387140;387141;387142;387143;387144;387145;387146;387147;387148;387149;387150;387151;387152;387153;387154;387155;387156	387115			54	
SSILPFTPPVVK	1	Acetyl (Protein N-term)	1325.7595	0.75948895	2709	Q15796	SMAD2	Mothers against decapentaplegic homolog 2	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	101.56	101.43	2	3.8428E-05	92153	160511_QHF_FH_JSI11i_1	53.683	6.7916			0.89913	0.85251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89913	0.85251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	131130000	46854000	84273000	46249000	0	46249000	0	0	0	65601000	27577000	38024000	19277000	19277000	0	47832	2709	45030	288522;288523;288524	387157;387158;387159	387157			3	
SSIMVQFIDK	1	Unmodified	1166.6005	0.60054547	5792				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	11.505	11.112	2	0.0089202	9000	160511_QHF_FH_JSI12i_1	50.607	11.585	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47833	5792	45031	288525	387160	387160			1	
SSINILLSLLPLPHHFGTVK	1	Unmodified	2185.2623	0.2623097	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.086	88.216	3;4	7.8241E-11	47487	160513_QHF_FH_JSI12Kac_6	117.74	109.75			1.0113	0.91375	12.762	5	0	Median	1.0113	0.85691	NaN	1	0	Median	0.74582	0.89055	3.6377	2	0	Median	1.0623	1.0221	NaN	1	0	Median	1.1004	1.1598	NaN	1	0	Median	1130500000	578960000	551560000	222100000	109800000	112290000	382530000	233190000	149340000	275550000	118170000	157370000	250350000	117790000	132560000	47834	3367	45032	288526;288527;288528;288529;288530	387161;387162;387163;387164;387165;387166;387167;387168;387169	387166			9	
SSISALNSSQLEPVVR	0	Unmodified	1685.8948	0.89481323	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.134	62.228	2	5.0651E-30	54178	160511_QHF_FH_JSI11i_2	189.3	166.82			1.0562	1.0999	8.284	4	1	Median	1.2523	1.0715	NaN	1	1	Median	0.98537	1.1844	NaN	1	0	Median	1.1321	1.129	NaN	1	0	Median	0.85834	0.97609	NaN	1	0	Median	135100000	70490000	64611000	21154000	9293500	11861000	25511000	10947000	14564000	52442000	29629000	22813000	35995000	20622000	15373000	47835	4181	45033	288531;288532;288533;288534	387170;387171;387172;387173;387174;387175;387176	387173			7	
SSISETLSGTDTFSSSNNHEK	1	Unmodified	2226.9877	0.98766358	3030	Q69YH5	CDCA2	Cell division cycle-associated protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.313	44.074	3	0.022297	37656	160511_QHF_FH_JSI12i_3	27.129	10.051			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47836	3030	45034	288535	387177	387177			1	
SSISGSLPSSGSLQAVSSR	0	Unmodified	1805.9119	0.91191986	4514	Q9BXF6	RAB11FIP5	Rab11 family-interacting protein 5	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				54.989	53.959	2	0.00034004	47400	160511_QHF_FH_JSI9i_2	64.55	54.597			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47837	4514	45035	288536	387178	387178			1	
SSISSVLK	1	Unmodified	819.47018	0.47018322	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	6.14		7					1	3		3	3	4	1	36.813	31.346	2	0.0018213	27508	160511_QHF_FH_JSI10i_2	82.241	59.618			0.95776	0.92167	22.201	8	4	Median	1.0304	0.88982	4.8786	2	1	Median	0.79907	0.95094	17.189	2	1	Median	0.66813	0.68558	33.324	3	2	Plateau	1.1447	1.2715	NaN	1	0	Median	575870000	317990000	257880000	109930000	59271000	50655000	132610000	75749000	56865000	208380000	121330000	87056000	124950000	61643000	63304000	47838	1725	45036	288537;288538;288539;288540;288541;288542;288543;288544;288545;288546;288547	387179;387180;387181;387182;387183;387184;387185;387186;387187;387188;387189;387190	387190			12	
SSITEPEGPNGPNIQK	1	Unmodified	1666.8162	0.81622856	2458	Q13625	TP53BP2	Apoptosis-stimulating of p53 protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.391	36.774	2	1.0327E-27	32890	160511_QHF_FH_JSI10i_1	149.31	114.78			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47839	2458	45037	288548;288549;288550	387191;387192;387193	387192			3	
SSIVMGEPISQSSSNSQ	0	Unmodified	1736.7887	0.78869318	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.117	50.445	2	9.5381E-41	45465	160511_QHF_FH_JSI10i_1	208.33	195.75			1.0337	1.022	15.131	5	2	Median	1.232	1.022	NaN	1	0	Median	0.80742	0.95821	NaN	1	0	Median	0.93899	0.91969	NaN	1	0	Median	1.1544	1.2173	14.691	2	2	Median	192140000	90959000	101180000	36183000	12802000	23381000	36558000	18779000	17778000	45246000	25864000	19382000	74153000	33513000	40639000	47840	3709	45038	288551;288552;288553;288554;288555	387194;387195;387196;387197;387198;387199;387200;387201	387198			8	
SSKPSKPEK	3	Unmodified	986.53966	0.53965977	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			4.5652	4.0659	3	0.014786	2030	160511_QHF_FH_JSI9i_3	48.284	24.254			1.1596	0.93421	NaN	1	0	Median	1.1596	0.93421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	415170000	200150000	215020000	415170000	200150000	215020000	0	0	0	0	0	0	0	0	0	47841	1430	45039	288556;288557	387202;387203	387203			2	
SSLAEYFK	1	Unmodified	943.4651	0.46509784	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.585	50.597	2	0.0032118	43585	160511_QHF_FH_JSI11i_2	74.255	51.633			1.0481	1.2816	15.51	3	1	Plateau	1.5202	1.2816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0481	1.0549	NaN	1	0	Median	1.2948	1.4332	NaN	1	1	Median	231440000	106580000	124860000	40009000	17293000	22715000	0	0	0	88781000	42766000	46015000	102650000	46525000	56128000	47842	5257	45040	288558;288559;288560;288561	387204;387205;387206	387205			3	
SSLDLSYYPTSSSTSFMSSSSSSSSWLTR	0	Unmodified	3124.3819	0.38190466	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	95.475	95.257	3	4.1011E-14	82709	160511_QHF_FH_JSI12i_3	84.365	78.335			0.95895	1.1419	7.4771	5	4	Median	1.4033	1.2211	NaN	1	1	Median	0.84347	1.0718	8.95	2	2	Median	1.1882	1.1528	NaN	1	0	Median	0.95895	1.0679	NaN	1	1	Median	99443000	43150000	56293000	24401000	5051100	19350000	27162000	14534000	12628000	27584000	17938000	9645800	20297000	5626600	14670000	47843	1703	45041	288562;288563;288564;288565;288566;288567;288568;288569	387207;387208;387209;387210;387211;387212;387213;387214;387215;387216	387215			10	
SSLDNIEMAYAR	0	Unmodified	1368.6344	0.63436479	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	55.942	55.048	2	1.7345E-23	47666	160511_QHF_FH_JSI11i_2	181.87	155.36			1.0326	1.0669	30.811	5	1	Median	1.4435	1.2094	NaN	1	0	Median	0.85393	1.0443	NaN	1	0	Median	1.0326	1.0333	NaN	1	0	Median	1.4097	1.5082	48.954	2	1	Median	380520000	156760000	223760000	69606000	31549000	38057000	39644000	21894000	17749000	73986000	31053000	42932000	197280000	72262000	125020000	47844	3503	45042	288570;288571;288572;288573;288574	387217;387218;387219;387220;387221;387222;387223	387221			7	
SSLEGPTILDIEK	1	Unmodified	1400.7399	0.73987572	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	70.718	70.418	2	5.8294E-05	64146	160511_QHF_FH_JSI12i_1	75.788	41.256			0.66644	0.70203	36.92	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78693	0.91146	NaN	1	1	Median	0.5644	0.54073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	250650000	143980000	106660000	0	0	0	100690000	54265000	46422000	149960000	89719000	60243000	0	0	0	47845	3229	45043	288575;288576;288577	387224;387225;387226	387225			3	
SSLFELAK	1	Unmodified	893.48583	0.48583328	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	57.442	56.488	2	0.00041541	48846	160511_QHF_FH_JSI11i_2	109.01	85.04			0.82454	0.82971	11.662	3	0	Median	0.9882	0.8568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82454	0.82971	NaN	1	0	Median	0.61466	0.69027	NaN	1	0	Median	283590000	144740000	138850000	56401000	24679000	31722000	0	0	0	132710000	64741000	67972000	94475000	55319000	39155000	47846	4675	45044	288578;288579;288580	387227;387228;387229;387230;387231	387231			5	
SSLFELAKK	2	Acetyl (K)	1063.5914	0.59136099	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.326	63.595	2	0.0029166	33952	160513_QHF_FH_JSI11Kac_5	75.378	57.993			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47847	4675	45045	288581	387232	387232	3214		1	
SSLFHQGGR	0	Unmodified	987.48863	0.48862725	3656	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			12.726	11.946	2	0.012435	9214	160511_QHF_FH_JSI9i_3	47.657	37.243			0.94902	0.93643	25.483	2	0	Median	1.3585	1.1213	NaN	1	0	Median	0.66299	0.78202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56560000	23873000	32687000	40883000	13372000	27511000	15676000	10501000	5175800	0	0	0	0	0	0	47848	3656	45046	288582;288583	387233;387234;387235	387233			3	
SSLGASFVQIK	1	Acetyl (Protein N-term)	1177.6343	0.63428844	5129	Q9NYL2	ZAK	Mitogen-activated protein kinase kinase kinase MLT	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.97	5				2					1	2	2	2	79.262	75.659	2	2.067E-06	70215	160511_QHF_FH_JSI10i_1	104.2	71.98			0.96111	1.0327	78.547	4	1	Median	1.3081	1.0526	NaN	1	0	Median	0.87343	1.0133	NaN	1	0	Median	0.22699	0.22033	NaN	1	1	Median	1.0576	1.1108	NaN	1	0	Median	83979000	41673000	42306000	26461000	12788000	13673000	3627100	1915600	1711400	16430000	13142000	3288100	37460000	13827000	23633000	47849	5129	45047	288584;288585;288586;288587;288588;288589;288590	387236;387237;387238;387239;387240;387241;387242;387243	387240			8	
SSLGDMFSPIRDDAVVNK	1	Unmodified	1949.9517	0.95167618	3672	Q8NHV4	NEDD1	Protein NEDD1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		75.709	75.709	3	0.031353	67537	160511_QHF_FH_JSI11i_3	21.353	14.295			1.3724	1.2703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3724	1.2703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86303000	42723000	43579000	0	0	0	0	0	0	86303000	42723000	43579000	0	0	0	47850	3672	45048	288591	387244	387244			1	
SSLGPVGLDK	1	Unmodified	971.52876	0.52876073	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	5.7	4	4	2			3	3			3	5	4	4	43.77	39.723	2	5.4218E-10	34077	160511_QHF_FH_JSI12i_2	138.98	101.42			1.0036	1.0482	9.8135	14	0	Median	1.2827	1.0466	8.1195	3	0	Median	0.85215	1.0496	2.9753	3	0	Plateau	0.9747	0.97044	6.7876	4	0	Median	1.0468	1.1441	8.0913	4	0	Median	5650500000	2839200000	2811300000	1130200000	444600000	685580000	1497000000	811320000	685680000	1701200000	903520000	797680000	1322100000	679810000	642320000	47851	1132	45049	288592;288593;288594;288595;288596;288597;288598;288599;288600;288601;288602;288603;288604;288605;288606;288607	387245;387246;387247;387248;387249;387250;387251;387252;387253;387254;387255;387256;387257;387258;387259;387260;387261;387262;387263;387264;387265;387266;387267;387268;387269;387270;387271;387272;387273;387274;387275;387276	387250			32	
SSLGQSASETEEDTVSVSK	1	Unmodified	1939.8858	0.88582427	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.513	37.895	2	1.097E-53	34116	160511_QHF_FH_JSI11i_1	260.49	226.62			0.87139	0.81596	6.6002	4	0	Linear	1.1348	0.9345	NaN	1	0	Median	0.71833	0.85562	NaN	1	0	Median	0.83216	0.81695	NaN	1	0	Median	0.91247	0.93114	NaN	1	0	Median	279860000	152360000	127500000	43654000	23419000	20235000	75750000	39581000	36169000	103870000	59974000	43900000	56586000	29387000	27199000	47852	2412	45050	288608;288609;288610;288611	387277;387278;387279;387280;387281;387282;387283;387284	387278			8	
SSLGQSASETEEDTVSVSKK	2	Unmodified	2067.9808	0.98078729	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			33.728	33.388	3	0.0028244	29803	160511_QHF_FH_JSI10i_1	45.245	36.584			1.4696	1.7377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4696	1.7377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15811000	3514700	12296000	0	0	0	15811000	3514700	12296000	0	0	0	0	0	0	47853	2412	45051	288612	387285	387285			1	
SSLGSHQLPR	0	Unmodified	1080.5676	0.56760585	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			16.314	15.281	2;3	1.9108E-10	12233	160511_QHF_FH_JSI10i_3	140.83	122.1			1.3595	1.3233	5.8341	4	0	Median	1.6884	1.3639	2.0501	2	0	Median	1.0752	1.2546	5.305	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	558180000	263680000	294500000	234490000	93144000	141340000	323690000	170530000	153160000	0	0	0	0	0	0	47854	732	45052	288613;288614;288615;288616	387286;387287;387288;387289;387290;387291	387286			6	
SSLGSLQTPEAVTTR	0	Unmodified	1545.7999	0.79985021	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	49.511	48.697	2	1.6303E-44	42029	160511_QHF_FH_JSI11i_2	182.08	156.87			0.99959	0.99049	30.212	7	3	Median	1.3159	1.1013	43.708	2	1	Median	0.53119	0.62906	NaN	1	1	Median	0.92947	0.8913	14.922	2	1	Median	1.154	1.1953	11.704	2	0	Median	308660000	169180000	139470000	68365000	32213000	36151000	62361000	44877000	17484000	97867000	51059000	46809000	80065000	41034000	39030000	47855	3250	45053	288617;288618;288619;288620;288621;288622;288623;288624;288625	387292;387293;387294;387295;387296;387297;387298;387299;387300;387301;387302	387301			11	
SSLGSLQTPEAVTTRK	1	Unmodified	1673.8948	0.89481323	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.55	0.498		5	6							5	5	1		41.591	40.459	2;3	1.008E-16	33877	160511_QHF_FH_JSI10i_3	125.54	98.755			0.95254	0.96125	23.534	9	7	Median	1.0141	0.84957	11.953	4	4	Median	0.90206	1.0583	23.954	4	3	Median	1.1785	1.0906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1014900000	518120000	496740000	470070000	250990000	219080000	457600000	230740000	226870000	87187000	36401000	50787000	0	0	0	47856	3250	45054	288626;288627;288628;288629;288630;288631;288632;288633;288634;288635;288636	387303;387304;387305;387306;387307;387308;387309;387310;387311;387312;387313;387314;387315	387308			13	
SSLHKSR	1	Acetyl (K);Acetyl (Protein N-term)	897.46683	0.46682918	5031	Q9NVG8	TBC1D13	TBC1 domain family member 13	yes	yes	1	1	0	1			By MS/MS		14	0							1					1		13.973	6.3518	2	0.021943	5863	160513_QHF_FH_JSI11Kac_4	48.794	32.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47857	5031	45055	288637	387316	387316	3298		1	
SSLIILK	1	Unmodified	772.50584	0.50584045	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.59	6.28	3	4	4			2	4	6	4	5	8	6	8	56.412	50.669	2	1.2437E-08	25839	160513_QHF_FH_JSI12Kac_5	138.07	51.988			1.0786	1.056	21.017	23	5	Median	1.215	1.0958	36.206	5	1	Median	0.80795	0.94874	5.4122	6	2	Median	1.1174	1.0723	9.4768	6	0	Median	1.0705	1.1035	23.087	6	2	Median	8097300000	3979700000	4117600000	1620000000	714220000	905790000	2136300000	1083100000	1053200000	2714500000	1297500000	1417100000	1626500000	884960000	741580000	47858	1300	45056	288638;288639;288640;288641;288642;288643;288644;288645;288646;288647;288648;288649;288650;288651;288652;288653;288654;288655;288656;288657;288658;288659;288660;288661;288662;288663;288664	387317;387318;387319;387320;387321;387322;387323;387324;387325;387326;387327;387328;387329;387330;387331;387332;387333;387334;387335;387336;387337;387338;387339;387340;387341;387342;387343;387344;387345;387346;387347;387348;387349;387350;387351;387352;387353;387354;387355;387356;387357;387358;387359;387360;387361;387362;387363;387364	387353			48	
SSLIILKQVMEEK	2	Acetyl (K)	1558.864	0.86403038	1300	P28066	PSMA5	Proteasome subunit alpha type-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.351	80.013	2	6.7754E-07	44782	160513_QHF_FH_JSI11Kac_6	138.75	103.34			0.28994	0.29158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28994	0.29158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36298000	29892000	6406400	0	0	0	0	0	0	36298000	29892000	6406400	0	0	0	47859	1300	45057	288665	387365	387365	1239		1	
SSLINSLK	1	Unmodified	860.49673	0.49673232	5041	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	1	3	37.568	36.953	2	0.00028101	32044	160511_QHF_FH_JSI11i_3	113.71	0			0.97127	0.97688	8.5467	6	0	Median	1.2048	1.0214	NaN	1	0	Median	0.80267	0.97711	NaN	1	0	Median	0.96907	0.92019	NaN	1	0	Median	0.97348	0.97666	12.389	3	0	Median	1138000000	596880000	541090000	162830000	81228000	81600000	200710000	112260000	88447000	189390000	88041000	101350000	585040000	315350000	269700000	47860	5041	45058	288666;288667;288668;288669;288670;288671	387366;387367;387368;387369	387367			4	
SSLKPIK	2	Acetyl (K)	813.496	0.49600404	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	0.7						1	3	3		1	2	2	2	31.249	20.687	2	0.0031321	14336	160513_QHF_FH_JSI10Kac_4	104.21	54.619			1.0902	1.0679	22.66	7	0	Median	1.1912	0.96718	NaN	1	0	Median	0.63072	0.75182	8.4346	2	0	Median	1.1305	1.1181	6.5055	2	0	Median	1.1485	1.2525	8.5307	2	0	Median	313030000	149980000	163050000	40987000	18683000	22303000	83753000	50920000	32834000	100430000	39949000	60485000	87855000	40427000	47429000	47861	3063	45059	288672;288673;288674;288675;288676;288677;288678	387370;387371;387372;387373;387374;387375;387376	387370	2754		7	
SSLLAVSNK	1	Unmodified	917.5182	0.51819605	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS		By MS/MS		8.5	6.5		2						2		2		2		34.747	29.426	2	1.1463E-05	24935	160511_QHF_FH_JSI11i_2	110.87	74.992			1.1556	0.96619	32.718	4	2	Median	1.1556	0.96619	5.3346	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84937	0.84627	54.839	2	1	Median	NaN	NaN	NaN	0	0	Median	114390000	55061000	59331000	46206000	18964000	27242000	0	0	0	68186000	36097000	32089000	0	0	0	47862	1443	45060	288679;288680;288681;288682	387377;387378;387379	387378			3	
SSLLDDLLTESEDMAQR	0	Unmodified	1921.8939	0.89388653	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	2	3	101.96	101.87	2;3	1.1972E-65	89621	160511_QHF_FH_JSI11i_2	232.5	219.17			1.1961	1.18	15.328	8	2	Median	1.5253	1.3158	29.895	2	1	Median	0.93304	1.165	NaN	1	0	Median	1.1052	1.1238	8.7069	2	1	Median	1.0288	1.1728	12.37	3	0	Plateau	711990000	321430000	390560000	105820000	42770000	63049000	103730000	52233000	51497000	209560000	89447000	120110000	292890000	136980000	155910000	47863	133	45061	288683;288684;288685;288686;288687;288688;288689;288690	387380;387381;387382;387383;387384;387385	387383			6	
SSLLDVLAAR	0	Unmodified	1043.5975	0.597509	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	3	2	81.696	80.959	2	5.4218E-10	67828	160511_QHF_FH_JSI10i_3	138.98	101.42			0.98673	0.99343	10.27	8	3	Median	1.2519	1.0494	0.41729	2	1	Median	0.74841	0.88071	5.9393	2	0	Median	1.034	0.99343	5.3721	2	1	Median	0.87962	0.92171	17.62	2	1	Median	1324100000	657170000	666940000	196480000	86928000	109550000	249540000	143270000	106280000	464890000	241510000	223380000	413200000	185460000	227740000	47864	5445	45062	288691;288692;288693;288694;288695;288696;288697;288698;288699	387386;387387;387388;387389;387390;387391;387392;387393;387394	387389			9	
SSLLEKGLDGAK	2	Acetyl (K)	1258.6769	0.67688153	2102	P81605	DCD	Dermcidin;Survival-promoting peptide;DCD-1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.8	0.433						1	3				2		2	67.953	57.566	2	3.5554E-12	30906	160513_QHF_FH_JSI10Kac_4	128.01	97.403			1.6207	1.8369	21.408	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7787	2.1371	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4768	1.5788	NaN	1	0	Median	13424000	5716300	7708000	0	0	0	8550800	2780400	5770400	0	0	0	4873500	2935900	1937600	47865	2102	45063	288700;288701;288702;288703	387395;387396;387397;387398	387395	2213		4	
SSLLFWALVDLIYNMFK	1	Unmodified	2059.0853	0.085256539	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.98	101.26	3	0.00055681	60008	160513_QHF_FH_JSI10Kac_6	73.983	64.195			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8504800	8504800	0	0	0	0	8504800	8504800	0	0	0	0	0	0	0	47866	2947	45064	288704	387399	387399			1	
SSLLIEQPVK	1	Unmodified	1112.6441	0.64412484	3632	Q8NDX5	PHC3	Polyhomeotic-like protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			49.167	48.747	2	0.00057548	43908	160511_QHF_FH_JSI10i_1	81.972	72.384			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47867	3632	45065	288705	387400	387400			1	
SSLLLGFR	0	Unmodified	891.5178	0.51780212	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	64.862	64.083	2	1.0737E-14	55838	160511_QHF_FH_JSI11i_2	170.73	147.42			0.83672	0.91785	9.3338	5	0	Median	1.1653	1.0086	NaN	1	0	Median	0.79096	0.97181	NaN	1	0	Median	0.90459	0.91785	NaN	1	0	Median	0.77319	0.8295	5.2171	2	0	Median	653970000	348830000	305140000	79137000	35943000	43194000	114240000	59835000	54401000	110690000	53426000	57260000	349910000	199630000	150280000	47868	1544	45066	288706;288707;288708;288709;288710	387401;387402;387403;387404;387405;387406	387404			6	
SSLLSALLAEMDK	1	Unmodified	1376.7221	0.72211717	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			102.17	102.01	2	6.3225E-05	84674	160511_QHF_FH_JSI10i_3	166.14	112.81			0.74455	0.72022	94.837	2	2	Median	0.4569	0.36832	NaN	1	1	Median	1.2133	1.4083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107840000	52383000	55461000	54693000	31854000	22838000	53152000	20529000	32623000	0	0	0	0	0	0	47869	1403	45067	288711;288712	387407;387408	387407			2	
SSLLTEKLLR	1	Acetyl (K)	1200.7078	0.70778773	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	1	0	0	1		By MS/MS	By matching		15	0								2			1	1		79.683	69.191	2	0.0095911	34472	160513_QHF_FH_JSI10Kac_5	60.518	56.22			0.53657	0.57054	76.231	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84485	0.9781	NaN	1	0	Median	0.34078	0.3328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14987000	10753000	4233400	0	0	0	3046800	1667700	1379100	11940000	9085500	2854300	0	0	0	47870	3290	45068	288713;288714	387409	387409	2827		1	
SSLLTELSNSLTK	1	Unmodified	1391.7508	0.75077476	5240	Q9UBK9	UXT	Protein UXT	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		87.077	87.077	2	0.00029713	77702	160511_QHF_FH_JSI11i_3	99.752	66.527			0.65367	0.58749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65367	0.58749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34135000	20574000	13561000	0	0	0	0	0	0	34135000	20574000	13561000	0	0	0	47871	5240	45069	288715	387410	387410			1	
SSLNPILFR	0	Unmodified	1045.592	0.59202969	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	63.942	62.928	2	2.335E-15	54838	160511_QHF_FH_JSI11i_2	147.16	57.483			1.0206	1.029	17.557	6	1	Median	1.3137	1.1042	28.252	2	0	Median	0.83058	1.0054	20.81	2	0	Median	1.187	1.1414	NaN	1	1	Median	0.84319	0.92774	NaN	1	0	Median	1636400000	846110000	790340000	377360000	166810000	210550000	613130000	341430000	271700000	450730000	227960000	222770000	195230000	109910000	85312000	47872	1486	45070	288716;288717;288718;288719;288720;288721;288722	387411;387412;387413;387414;387415;387416;387417;387418;387419;387420	387418			10	
SSLNSQQPTEEK	1	Unmodified	1346.6314	0.6313879	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.703	10.853	2	0.00023246	8363	160511_QHF_FH_JSI9i_1	93.843	61.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9853200	0	9853200	9853200	0	9853200	0	0	0	0	0	0	0	0	0	47873	545	45071	288723	387421	387421			1	
SSLNSSPWSGLMALGNSR	0	Unmodified	1862.8945	0.89449566	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				90.437	89.311	2	0.00050215	73242	160511_QHF_FH_JSI9i_3	78.763	72.53			1.2611	1.0809	7.2005	2	2	Median	1.2611	1.0809	7.2005	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18829000	9272300	9557200	18829000	9272300	9557200	0	0	0	0	0	0	0	0	0	47874	3708	45072	288724;288725	387422;387423	387423			2	
SSLPAPSKALSGPEPAK	2	Acetyl (K)	1677.8938	0.8937506	1757	P51825	AFF1	AF4/FMR2 family member 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					3	6					2	2	5	64.539	55.073	2;3	0.00011063	28563	160513_QHF_FH_JSI12Kac_3	93.959	78.42			1.1229	1.1822	15.777	7	0	Median	NaN	NaN	NaN	0	0	Median	0.85334	1.001	7.2102	2	0	Median	1.4175	1.3933	12.407	2	0	Median	1.1229	1.1822	9.1953	3	0	Median	57867000	26746000	31121000	0	0	0	19122000	9722700	9399200	15032000	6201300	8830500	23713000	10822000	12891000	47875	1757	45073	288726;288727;288728;288729;288730;288731;288732;288733;288734	387424;387425;387426;387427;387428;387429;387430;387431;387432;387433	387426	1771		10	
SSLQSQCLNEVLK	1	Unmodified	1504.7555	0.75554256	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		54.545	54.133	2	9.7056E-13	48845	160511_QHF_FH_JSI10i_1	126.71	99.38			0.94619	0.91716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94619	0.91716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60088000	28804000	31284000	0	0	0	0	0	0	60088000	28804000	31284000	0	0	0	47876	2517	45074	288735;288736	387434;387435	387435			2	
SSLSEYAFR	0	Acetyl (Protein N-term)	1100.5138	0.51383895	5503	Q9Y291	MRPS33	28S ribosomal protein S33, mitochondrial	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	66.855	64.673	2	1.1717E-05	57323	160511_QHF_FH_JSI9i_1	133.12	110.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47877	5503	45075	288737;288738;288739;288740;288741	387436;387437;387438;387439;387440	387439			5	
SSLSGDEEDELFK	1	Unmodified	1454.6413	0.64128389	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	53.861	53.326	2	7.6695E-06	48341	160511_QHF_FH_JSI11i_1	129.82	112.31			1.0189	1.0849	14.002	4	4	Median	NaN	NaN	NaN	0	0	Median	0.86333	0.98545	NaN	1	1	Median	1.2519	1.1943	NaN	1	1	Median	1.0189	1.0888	20.082	2	2	Median	148050000	64584000	83468000	0	0	0	29688000	17470000	12218000	38758000	14603000	24155000	79605000	32510000	47094000	47878	2938	45076	288742;288743;288744;288745;288746	387441;387442;387443;387444;387445;387446	387442			6	
SSLSHAMVIDSR	0	Unmodified	1301.6398	0.63978452	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	2	2	2	29.641	29.149	2;3	5.3793E-16	25528	160511_QHF_FH_JSI9i_2	162.26	150.49			0.79776	0.95179	20.543	7	0	Median	1.1076	0.95179	NaN	1	0	Median	0.80535	0.96473	1.2057	2	0	Median	0.73388	0.68617	13.194	2	0	Median	0.88181	0.89907	30.523	2	0	Median	341260000	178270000	162980000	43661000	20473000	23188000	47837000	24110000	23727000	157760000	83907000	73855000	91999000	49784000	42215000	47879	5645	45077	288747;288748;288749;288750;288751;288752;288753	387447;387448;387449;387450;387451;387452;387453;387454;387455	387449			8	
SSLSQQQLR	0	Unmodified	1045.5516	0.55162144	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.695	14.781	2	0.023134	11871	160511_QHF_FH_JSI12i_2	49.57	35.991			1.2206	1.2971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2206	1.2971	NaN	1	1	Median	26345000	11737000	14607000	0	0	0	0	0	0	0	0	0	26345000	11737000	14607000	47880	3146	45078	288754	387456	387456			1	
SSLSVQPGFLADLNR	0	Unmodified	1602.8366	0.83657007	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	81.025	80.912	2	1.7454E-06	72333	160511_QHF_FH_JSI11i_3	126.76	109.03			0.40021	0.38304	52.117	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6063	0.55373	NaN	1	1	Median	0.26418	0.26497	NaN	1	1	Median	95323000	67779000	27544000	0	0	0	0	0	0	35024000	18561000	16463000	60299000	49218000	11081000	47881	3200	45079	288755;288756;288757	387457;387458;387459	387457			3	
SSLTLATAINQR	0	Unmodified	1273.699	0.69901396	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				51.975	50.385	2	0.00020373	41287	160511_QHF_FH_JSI9i_3	96.015	84.864			1.3502	1.1275	NaN	1	1	Median	1.3502	1.1275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13817000	5457200	8360100	13817000	5457200	8360100	0	0	0	0	0	0	0	0	0	47882	3009	45080	288758	387460	387460			1	
SSLTNCLFR	0	Unmodified	1096.5335	0.53352853	3899	Q92887	ABCC2	Canalicular multispecific organic anion transporter 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	59.803	50.63	3	0.030036	27892	160513_QHF_FH_JSI10Kac_6	25.559	11.98			1.0672	1.2272	13.074	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.3461	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.022	1.1188	NaN	1	0	Median	37135000	18514000	18621000	0	0	0	26272000	13147000	13125000	0	0	0	10862000	5367100	5495400	47883	3899	45081	288759;288760	387461	387461			1	
SSLTQHSWQSLK	1	Unmodified	1400.7048	0.70482762	5122	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			36.359	34.919	2	2.0309E-05	29070	160511_QHF_FH_JSI10i_3	116.23	96.962			0.55258	0.64587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55258	0.64587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18320000	12921000	5398800	0	0	0	18320000	12921000	5398800	0	0	0	0	0	0	47884	5122	45082	288761	387462	387462			1	
SSLVTSK	1	Unmodified	720.40177	0.4017693	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.1787	8.8132	2	0.014535	6582	160511_QHF_FH_JSI10i_1	66.073	7.1558			1.0961	1.2394	22.751	4	1	Median	1.5649	1.2921	NaN	1	0	Median	1.0238	1.2402	NaN	1	0	Median	0.82796	0.79865	NaN	1	1	Median	1.1736	1.2385	NaN	1	0	Median	843730000	432600000	411130000	140620000	56804000	83821000	272560000	154990000	117560000	213890000	99539000	114350000	216670000	121260000	95402000	47885	373	45083	288762;288763;288764;288765	387463;387464;387465;387466;387467	387465			5	
SSLVTSKLAGGQVE	1	Acetyl (K)	1416.746	0.74602373	373	O43768	ENSA	Alpha-endosulfine	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	11.6	0.49				2	3						2	1	2	73.657	65.063	2	1.1968E-10	28189	160513_QHF_FH_JSI12Kac_2	124.12	113.6			0.85497	0.89941	24.431	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0581	1.2153	NaN	1	0	Median	0.76228	0.73245	NaN	1	0	Median	0.83253	0.89941	22.038	2	0	Median	117680000	61443000	56240000	0	0	0	12632000	7106400	5526000	5183200	2852400	2330800	99868000	51484000	48383000	47886	373	45084	288766;288767;288768;288769;288770	387468;387469;387470;387471;387472;387473;387474	387473	191		7	
SSLYEGLEKPESR	1	Unmodified	1493.7362	0.73618733	1168;2177	P20020;Q01814	ATP2B1;ATP2B2	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2	no	no	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			36.281	35.237	2	0.00088192	30674	160511_QHF_FH_JSI9i_2	85.845	67.51			0.70879	0.61762	NaN	1	0	Median	0.70879	0.61762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24263000	13992000	10270000	24263000	13992000	10270000	0	0	0	0	0	0	0	0	0	47887	1168;2177	45085	288771;288772	387475;387476;387477;387478	387475			4	
SSMAPSQPEESDVFLR	0	Unmodified	1778.8145	0.814514	3188	Q6ZSR9		Uncharacterized protein FLJ45252	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	58.118	57.465	2	7.2075E-17	51010	160511_QHF_FH_JSI9i_1	142.91	119.06			1.0049	0.92098	26.471	4	2	Median	1.1145	0.91591	NaN	1	1	Median	0.51095	0.58172	NaN	1	1	Median	0.94657	0.92607	NaN	1	0	Median	1.0669	1.0712	NaN	1	0	Median	142450000	77065000	65384000	43405000	23941000	19464000	26041000	18110000	7931200	45313000	19688000	25624000	27690000	15326000	12364000	47888	3188	45086	288773;288774;288775;288776;288777	387479;387480;387481;387482;387483;387484;387485;387486	387486			8	
SSMAVHSLFK	1	Unmodified	1105.559	0.559015	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	5.6	5.2			4						1	1	1	2	1	40.742	38.168	2	0.00076183	31909	160511_QHF_FH_JSI10i_3	91.867	75.664			0.88223	1.0048	25.257	5	1	Median	1.402	1.1198	NaN	1	0	Median	0.88223	1.0048	NaN	1	0	Median	0.91991	0.89478	42.237	2	1	Median	0.75516	0.77484	NaN	1	0	Median	771870000	393540000	378330000	156530000	79439000	77087000	157200000	81861000	75342000	189670000	89205000	100470000	268470000	143030000	125440000	47889	3173	45087	288778;288779;288780;288781;288782	387487;387488;387489	387487			1	
SSMAVHSLFK	1	Oxidation (M)	1121.5539	0.55392963	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	24.765	24.739	2	0.00065202	20532	160511_QHF_FH_JSI12i_3	89.886	65.931			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47890	3173	45087	288783	387490	387490		2209	1	
SSMDGAGAEEVLAPLR	0	Unmodified	1601.7719	0.7719209	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	66.714	66.185	2	1.3248E-21	60230	160511_QHF_FH_JSI12i_1	132.79	121.06			0.52344	0.52919	74.816	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32032	0.31179	NaN	1	1	Median	0.85538	0.89819	NaN	1	1	Median	64344000	43582000	20762000	0	0	0	0	0	0	34653000	28020000	6632600	29692000	15562000	14129000	47891	1519	45088	288784;288785;288786	387491;387492;387493	387493			3	
SSMNPEYDYLFK	1	Acetyl (Protein N-term)	1534.665	0.66499622	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	86.594	86.144	2	3.0929E-16	76710	160511_QHF_FH_JSI9i_1	94.692	91.436			1.0656	1.0041	8.4526	4	0	Median	1.1424	0.91302	NaN	1	0	Median	0.80702	0.94763	NaN	1	0	Median	1.099	1.064	NaN	1	0	Median	1.0332	1.0834	NaN	1	0	Median	965630000	477570000	488060000	250190000	110290000	139900000	235040000	129440000	105600000	279010000	137380000	141630000	201390000	100460000	100930000	47892	2020	45089	288787;288788;288789;288790;288791	387494;387495;387496;387497;387498;387499;387500;387501	387501			8	
SSMNPEYDYLFK	1	Acetyl (Protein N-term);Oxidation (M)	1550.6599	0.65991084	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	1	1	0				By MS/MS	12	0					2								2	80.411	72.42	2	0.00010508	31246	160513_QHF_FH_JSI12Kac_2	85.533	82.555			1.0764	1.1234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0764	1.1234	NaN	1	0	Median	9279400	3862700	5416700	0	0	0	0	0	0	0	0	0	9279400	3862700	5416700	47893	2020	45089	288792;288793	387502;387503	387503		1680	2	
SSMNVDEAFSSLAR	0	Unmodified	1512.6879	0.68785692	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	2	1	1	70.348	69.581	2	1.1437E-30	59866	160511_QHF_FH_JSI12i_2	196.24	161.01			1.0086	1.0765	4.4998	5	1	Median	1.2552	1.0637	NaN	1	0	Median	0.94616	1.1241	6.1224	2	1	Median	1.0334	1.0441	NaN	1	0	Median	0.97758	1.0935	NaN	1	0	Median	748260000	369540000	378710000	116680000	53593000	63086000	296330000	151660000	144670000	171310000	81265000	90047000	163930000	83022000	80909000	47894	1730	45090	288794;288795;288796;288797;288798;288799	387504;387505;387506;387507;387508;387509;387510;387511;387512;387513	387505			10	
SSMNVDEAFSSLAR	0	Oxidation (M)	1528.6828	0.68277155	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			66.204	55.506	2	0.025621	30092	160513_QHF_FH_JSI10Kac_4	57.019	41.448			0.88523	0.956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88523	0.956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1144900	728540	416390	0	0	0	1144900	728540	416390	0	0	0	0	0	0	47895	1730	45090	288800	387514	387514			1	
SSMPKPER	1	Acetyl (Protein N-term);Oxidation (M)	988.46478	0.46478027	2868	Q56UN5	MAP3K19	Mitogen-activated protein kinase kinase kinase 19	yes	yes	0	1	1	1				By MS/MS	1	0	1												1	73.948	73.383	2	0.022091	66871	160511_QHF_FH_JSI12i_1	32.47	20.566			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47896	2868	45091	288801	387515	387515			1	
SSMPWNK	1	Unmodified	848.38507	0.38507338	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	27.987	27.371	2	0.0042289	23438	160511_QHF_FH_JSI11i_3	99.384	85.398			1.4345	1.5676	22.345	6	3	Median	1.1567	0.98254	NaN	1	1	Median	1.3862	1.643	11.138	2	1	Median	1.511	1.457	14.84	2	1	Median	1.7378	1.7387	NaN	1	0	Median	1121900000	470370000	651560000	199180000	69591000	129590000	254750000	122940000	131810000	440780000	180040000	260750000	227230000	97807000	129420000	47897	2282	45092	288802;288803;288804;288805;288806;288807	387516;387517;387518;387519;387520;387521;387522	387516			7	
SSMSGLHLVK	1	Unmodified	1057.559	0.559015	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	31.086	31.008	3	0.012263	26093	160511_QHF_FH_JSI12i_3	44.639	29.024			0.69467	0.70501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69467	0.70501	NaN	1	0	Median	108170000	68987000	39187000	0	0	0	0	0	0	0	0	0	108170000	68987000	39187000	47898	2348	45093	288808	387523	387523			0	
SSMSVTSLEAELQAK	1	Unmodified	1579.7763	0.77633758	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								2	4	5	2	74.735	74.128	2;3	9.5261E-52	64083	160511_QHF_FH_JSI12i_2	253.79	238.53			0.76774	0.87002	31.699	12	8	Median	0.57091	0.48186	35.242	2	1	Median	0.60534	0.71367	15.704	4	3	Median	1.0485	1.0314	10.306	4	3	Median	0.8849	0.95948	19.728	2	1	Median	1472900000	852010000	620860000	215830000	124870000	90960000	459060000	301980000	157080000	524880000	265650000	259230000	273110000	159510000	113590000	47899	4806	45094	288809;288810;288811;288812;288813;288814;288815;288816;288817;288818;288819;288820;288821	387524;387525;387526;387527;387528;387529;387530;387531;387532;387533;387534;387535;387536;387537;387538;387539	387527			16	
SSMTFLTR	0	Unmodified	941.46405	0.46405199	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	45.141	40.694	2	2.8488E-06	34630	160511_QHF_FH_JSI12i_3	141.52	120.96			0.91267	0.90777	8.2519	12	0	Median	1.0891	0.93431	4.0168	3	0	Plateau	0.81536	0.97631	11.303	3	0	Median	0.97942	0.91903	4.3998	3	0	Median	0.8141	0.83622	4.5392	3	0	Median	1314800000	706380000	608390000	204170000	108190000	95973000	412810000	227080000	185730000	396300000	199410000	196880000	301490000	171690000	129800000	47900	5596	45095	288822;288823;288824;288825;288826;288827;288828;288829;288830;288831;288832;288833;288834	387540;387541;387542;387543;387544;387545;387546;387547;387548;387549;387550;387551;387552;387553;387554;387555;387556	387554			17	
SSMYYVLQFLK	1	Unmodified	1377.7003	0.70025951	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.795	83.815	2	2.434E-58	44912	160513_QHF_FH_JSI12Kac_6	255.84	199.11			0.93578	0.8702	33.568	3	0	Median	0.93578	0.80974	NaN	1	0	Median	0.73217	0.8702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4191	1.4963	NaN	1	0	Median	899220000	435280000	463940000	241950000	134090000	107870000	404080000	201340000	202740000	0	0	0	253190000	99852000	153340000	47901	207	45096	288835;288836;288837;288838	387557;387558;387559;387560;387561;387562;387563	387561			7	
SSNAEVIK	1	Unmodified	846.4447	0.44469675	5473	Q9UQ13	SHOC2	Leucine-rich repeat protein SHOC-2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.7798	9.6526	2	0.060262	7328	160511_QHF_FH_JSI11i_1	43.979	13.631			0.83634	0.81314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83634	0.81314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87168000	52445000	34723000	0	0	0	0	0	0	87168000	52445000	34723000	0	0	0	47902	5473	45097	288839	387564	387564			1	
SSNECFK	1	Acetyl (Protein N-term)	912.36473	0.36473187	2011	P62633	CNBP	Cellular nucleic acid-binding protein	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS		3.5	4.33	3			1						1	2	1		15.575	15.113	2	0.0063867	12730	160511_QHF_FH_JSI10i_1	38.806	32.352			0.76524	0.9133	25.768	3	0	Plateau	1.5719	1.2754	NaN	1	0	Median	0.76524	0.9133	NaN	1	0	Median	0.80643	0.76828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132840000	64333000	68505000	38655000	13534000	25121000	54822000	28208000	26614000	39361000	22591000	16770000	0	0	0	47903	2011	45098	288840;288841;288842;288843	387565;387566;387567	387566			3	
SSNFLVTQGYQVK	1	Unmodified	1469.7514	0.75144346	3583	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.22	1	2					1	5		3	3	2	1	60.905	54.316	2	0.00045007	46523	160511_QHF_FH_JSI12i_2	92.112	82.224			0.76981	0.88781	40.132	7	5	Median	0.82441	0.69461	57.524	2	2	Median	0.93974	1.0733	26.829	2	1	Median	0.74355	0.72979	54.205	2	1	Median	0.59906	0.65319	NaN	1	1	Median	99205000	51445000	47760000	27807000	13316000	14490000	29151000	16392000	12759000	3927200	1965200	1962000	38320000	19771000	18548000	47904	3583	45099	288844;288845;288846;288847;288848;288849;288850;288851;288852	387568;387569;387570;387571;387572;387573;387574;387575;387576;387577	387568			10	
SSNFLYLQVK	1	Unmodified	1197.6394	0.63937381	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	5.81	1	2						6	4	2	5	3	3	72.85	64.543	2	2.9222E-08	31853	160513_QHF_FH_JSI12Kac_5	135.79	106.32			0.87527	0.91661	28.586	11	6	Median	0.47193	0.40112	NaN	1	1	Median	0.76787	0.91136	19.694	4	2	Median	0.95685	0.95249	8.5731	3	2	Median	0.86483	0.91257	15.07	3	1	Median	400810000	220450000	180350000	6831900	4199200	2632700	64420000	38511000	25909000	179370000	87596000	91772000	150190000	90149000	60040000	47905	4448	45100	288853;288854;288855;288856;288857;288858;288859;288860;288861;288862;288863;288864;288865	387578;387579;387580;387581;387582;387583;387584;387585;387586;387587;387588;387589	387584			12	
SSNPMMVLQLPER	0	Unmodified	1500.7429	0.74286938	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	76.77	76.094	2	0.00020874	65810	160511_QHF_FH_JSI12i_2	147.24	137.29			1.1685	1.1667	19.848	3	3	Median	NaN	NaN	NaN	0	0	Median	1.3989	1.6421	NaN	1	1	Median	1.1685	1.1621	NaN	1	1	Median	1.0151	1.1667	NaN	1	1	Median	259410000	118020000	141390000	0	0	0	93128000	38662000	54466000	100300000	48403000	51902000	65978000	30959000	35018000	47906	2092	45101	288866;288867;288868	387590;387591;387592	387590			3	
SSNPSISDDSYFRK	1	Unmodified	1601.7322	0.73216458	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	2	1		36.212	35.471	3	8.9212E-05	30846	160511_QHF_FH_JSI11i_3	77.42	68.37			0.68651	0.61126	38.973	4	0	Median	0.71026	0.59585	NaN	1	0	Median	0.7283	0.88589	56.273	2	0	Median	0.66356	0.62707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216890000	119950000	96939000	35422000	20979000	14443000	101450000	56858000	44595000	80019000	42118000	37901000	0	0	0	47907	3436	45102	288869;288870;288871;288872	387593;387594;387595;387596	387593			3	
SSNSLVFQTLPR	0	Unmodified	1347.7147	0.71466402	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6.33	6.13		2						1		1		1	1	64.351	60.207	2	1.934E-07	51587	160511_QHF_FH_JSI12i_2	133.07	113.28			0.61246	0.68953	25.112	3	1	Plateau	1.0536	0.87732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54925	0.55943	NaN	1	0	Median	0.75709	0.84989	NaN	1	0	Median	207900000	119170000	88722000	3086100	1434000	1652100	0	0	0	135430000	81881000	53547000	69381000	35858000	33523000	47908	4288	45103	288873;288874;288875	387597;387598	387597			2	
SSNSSENQQFLK	1	Unmodified	1367.6317	0.63172225	3810	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	20.439	20.062	2	0.0011411	17062	160511_QHF_FH_JSI9i_1	67.334	53.755			0.76402	0.81855	25.803	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60288	0.68203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96823	0.98239	NaN	1	1	Median	31713000	14794000	16920000	0	0	0	13505000	6326000	7179200	0	0	0	18208000	8467700	9740600	47909	3810	45104	288876;288877;288878	387599;387600;387601	387601			3	
SSNVSYKYSK	2	Acetyl (K)	1203.5772	0.57716749	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		28.639	20.205	2	0.0027575	12814	160513_QHF_FH_JSI11Kac_4	79.974	58.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1542300	1542300	0	0	0	0	0	0	0	1542300	1542300	0	0	0	0	47910	1005	45105	288879	387602	387602	801		1	
SSNYENGEIGESQVK	1	Unmodified	1639.7326	0.73255851	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				26.953	25.695	2	0.002665	22211	160511_QHF_FH_JSI9i_1	57.802	48.156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47911	2546	45106	288880	387603	387603			1	
SSPASTPSR	0	Acetyl (Protein N-term)	930.44067	0.44067401	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				10.583	9.7941	2	0.003565	7265	160511_QHF_FH_JSI9i_1	49.423	25.655			0.087355	0.071431	NaN	1	0	Median	0.087355	0.071431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74149000	68107000	6042200	74149000	68107000	6042200	0	0	0	0	0	0	0	0	0	47912	1409	45107	288881	387604	387604			1	
SSPASTPSRR	0	Acetyl (Protein N-term)	1086.5418	0.54178503	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		7.449	7.1601	2	4.7134E-07	4948	160511_QHF_FH_JSI10i_1	130.75	78.266			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47913	1409	45108	288882;288883;288884;288885;288886	387605;387606;387607;387608;387609	387606			5	
SSPELEDTATSSK	1	Unmodified	1350.6151	0.61506914	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1						1	2	2	21.282	19.183	2	5.1855E-06	16674	160511_QHF_FH_JSI12i_1	125.72	114.97			1.226	1.2386	55.38	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9552	1.9032	55.024	2	0	Median	0.89144	0.9365	33.821	2	2	Median	148340000	78569000	69773000	0	0	0	0	0	0	61825000	32978000	28846000	86518000	45591000	40927000	47914	1576	45109	288887;288888;288889;288890;288891	387610;387611;387612;387613;387614	387613			5	
SSPEPVALTESETEYVIR	0	Unmodified	2005.9844	0.9844161	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	73.791	73.283	2;3	1.5836E-13	66778	160511_QHF_FH_JSI12i_1	137.61	120.53			1.02	1.0603	5.6215	9	2	Median	1.3687	1.1346	2.65	2	0	Median	0.94193	1.1144	8.4707	2	0	Median	1.0537	1.0363	4.5749	2	0	Median	0.98948	1.0118	2.5623	3	2	Plateau	1451900000	692310000	759550000	345450000	147470000	197980000	338610000	164080000	174530000	299770000	152470000	147300000	468020000	228290000	239730000	47915	5708	45110	288892;288893;288894;288895;288896;288897;288898;288899;288900	387615;387616;387617;387618;387619;387620;387621;387622;387623;387624;387625;387626;387627;387628;387629;387630;387631;387632;387633	387624			19	
SSPEVSSINQEALVLTAK	1	Unmodified	1871.984	0.98402217	4953	Q9NRG0	CHRAC1	Chromatin accessibility complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	71.585	71.046	2;3	4.3944E-105	64362	160511_QHF_FH_JSI10i_1	232.78	206.37			0.55065	0.56624	18.016	5	5	Median	0.65981	0.53189	NaN	1	1	Median	0.49514	0.57908	NaN	1	1	Median	0.57211	0.56624	NaN	1	1	Median	0.44623	0.46821	29.745	2	2	Median	870750000	547590000	323160000	179270000	116990000	62274000	212110000	128790000	83321000	198900000	117730000	81165000	280470000	184070000	96396000	47916	4953	45111	288901;288902;288903;288904;288905;288906	387634;387635;387636;387637;387638;387639	387638			6	
SSPGPAPR	0	Unmodified	767.3926	0.3926016	4687	Q9H330	TMEM245	Transmembrane protein 245	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	6.2962	6.0645	2	0.018976	4059	160511_QHF_FH_JSI10i_1	57.463	0			0.11637	0.13194	1.1202	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.1148	0.13309	NaN	1	1	Median	0.13581	0.13194	NaN	1	1	Median	0.1221	0.13017	NaN	1	1	Median	3884500000	3522200000	362250000	0	0	0	1341400000	1227500000	113910000	1222600000	1094700000	127890000	1320500000	1200000000	120440000	47917	4687	45112	288907;288908;288909	387640;387641;387642	387642			3	
SSPGQTPEEGAQALAEFAALHGPALR	0	Unmodified	2604.2932	0.29322849	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	93.56	93.273	3	3.1145E-42	82729	160511_QHF_FH_JSI10i_2	181.37	175.49			1.2042	1.1917	9.0654	6	0	Median	1.2226	1.0382	NaN	1	0	Median	0.84364	1.026	NaN	1	0	Median	1.2557	1.2225	2.2095	2	0	Median	1.1403	1.2218	4.9272	2	0	Median	1785300000	821820000	963510000	320650000	147400000	173250000	250090000	130270000	119820000	615220000	268990000	346230000	599370000	275160000	324210000	47918	2509	45113	288910;288911;288912;288913;288914;288915	387643;387644;387645;387646;387647;387648;387649;387650;387651;387652;387653	387650			11	
SSPGSVAASPSGGGGR	0	Unmodified	1329.6273	0.62730558	4513	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.948	11.098	2	0.00014393	8568	160511_QHF_FH_JSI9i_1	81.494	63.182			1.3466	1.1212	NaN	1	0	Median	1.3466	1.1212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22855000	11138000	11717000	22855000	11138000	11717000	0	0	0	0	0	0	0	0	0	47919	4513	45114	288916	387654	387654			1	
SSPHGSLGSVVNSLSGLK	1	Unmodified	1724.9057	0.90571227	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	65.91	65.092	3	4.0948E-08	57595	160511_QHF_FH_JSI11i_3	107.98	95.422			0.84148	0.84179	45.553	4	1	Median	1.2201	0.97836	NaN	1	0	Median	0.91997	1.0623	NaN	1	0	Median	0.76969	0.72429	NaN	1	0	Median	0.37534	0.38901	NaN	1	1	Median	317550000	173660000	143880000	58231000	28072000	30159000	66541000	25866000	40675000	143210000	82724000	60487000	49565000	37002000	12563000	47920	3000	45115	288917;288918;288919;288920	387655;387656;387657;387658;387659	387655			5	
SSPLIQFHLLHSK	1	Unmodified	1505.8354	0.83544786	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	4	4	4	4	64.24	59.534	2;3;4	2.4059E-06	32438	160513_QHF_FH_JSI11Kac_6	100.11	93.073			0.86268	0.87508	14.586	15	3	Median	1.1316	0.9388	23.29	4	0	Median	0.83053	0.91897	9.1433	3	1	Plateau	1.0709	1.023	15.902	4	1	Median	0.83645	0.86423	8.9562	4	1	Median	1340800000	669100000	671740000	273200000	127930000	145270000	334640000	187300000	147340000	411640000	182800000	228840000	321360000	171060000	150300000	47921	635	45116	288921;288922;288923;288924;288925;288926;288927;288928;288929;288930;288931;288932;288933;288934;288935;288936	387660;387661;387662;387663;387664;387665;387666;387667;387668;387669;387670;387671;387672;387673;387674;387675;387676;387677;387678;387679;387680;387681;387682;387683;387684	387668			25	
SSPLLNYNTGVYR	0	Unmodified	1482.7467	0.74669243	2935	Q5T0W9	FAM83B	Protein FAM83B	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			56.229	55.32	2	0.0077547	48879	160511_QHF_FH_JSI10i_2	59.542	44.276			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47922	2935	45117	288937	387685	387685			1	
SSPLVNAALEGK	1	Unmodified	1184.6401	0.6401021	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.579	47.066	2	0.0083797	40558	160511_QHF_FH_JSI11i_2	59.265	41.829			1.6198	1.6564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6198	1.6564	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20676000	8669500	12006000	0	0	0	0	0	0	20676000	8669500	12006000	0	0	0	47923	15	45118	288938	387686	387686			1	
SSPNPFVGSPPK	1	Unmodified	1212.6139	0.61388734	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.861	37.249	2	0.0021487	33444	160511_QHF_FH_JSI11i_1	71.896	64.25			0.5767	0.52902	12.507	4	4	Linear	0.91097	0.74539	NaN	1	1	Median	0.55842	0.64909	NaN	1	1	Median	0.56231	0.55251	NaN	1	1	Median	0.59145	0.61165	NaN	1	1	Median	507970000	318880000	189090000	74386000	34894000	39492000	115220000	75015000	40208000	183240000	118680000	64560000	135120000	90288000	44834000	47924	2137	45119	288939;288940;288941;288942	387687;387688;387689;387690;387691	387687			5	
SSPPGHYYQK	1	Unmodified	1162.5407	0.5407224	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.37		3	5						2	2	3	3	2	10.84	8.9933	2;3	0.0067499	7471	160511_QHF_FH_JSI9i_2	61.962	34.708			1.1131	1.12	22.898	10	4	Median	1.3535	1.1892	7.1538	2	2	Median	1.0061	1.1878	33.617	3	1	Median	1.121	1.0547	22.775	3	1	Plateau	1.1367	1.1538	5.5308	2	0	Median	711640000	352520000	359110000	15160000	6075900	9084000	111270000	54115000	57159000	230010000	116620000	113390000	355190000	175720000	179480000	47925	5090	45120	288943;288944;288945;288946;288947;288948;288949;288950;288951;288952	387692;387693;387694;387695;387696;387697;387698	387694			6	
SSPPSIAPLALDSADLSEEK	1	Unmodified	2026.0106	0.010630851	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.519	80.049	2	1.006E-13	71090	160511_QHF_FH_JSI9i_1	145.29	123.73			1.0154	0.99428	3.8315	4	0	Median	1.1899	0.96264	NaN	1	0	Median	0.85545	1.0033	NaN	1	0	Median	1.072	1.0536	NaN	1	0	Median	0.9617	0.98538	NaN	1	0	Median	197710000	99569000	98141000	50886000	21458000	29428000	47242000	25846000	21396000	41458000	19969000	21489000	58124000	32296000	25828000	47926	1512	45121	288953;288954;288955;288956	387699;387700;387701;387702;387703;387704;387705;387706;387707	387706			9	
SSPPVQFSLLHSK	1	Unmodified	1425.7616	0.76161421	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	4	3	2	1	57.357	55.636	2;3	7.4935E-23	47734	160511_QHF_FH_JSI12i_3	164.81	159.32			0.96528	0.95591	28.57	10	6	Median	1.271	1.1003	18.692	4	3	Median	0.77685	0.89703	17.224	3	2	Median	0.68334	0.6785	57.466	2	1	Median	0.83795	0.86431	NaN	1	0	Median	1724500000	777940000	946530000	287000000	121940000	165050000	426610000	211500000	215110000	506970000	215060000	291910000	503890000	229430000	274460000	47927	726	45122	288957;288958;288959;288960;288961;288962;288963;288964;288965;288966	387708;387709;387710;387711;387712;387713;387714;387715;387716;387717;387718;387719;387720;387721;387722;387723;387724;387725	387724			18	
SSPQFGVTLLTYELLQR	0	Unmodified	1951.0415	0.041477469	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	95.413	87.362	2;3	1.117E-69	51339	160513_QHF_FH_JSI10Kac_6	210.34	166.79			1.5693	1.5594	9.859	6	2	Median	1.6698	1.4045	8.3032	2	1	Median	1.3208	1.5935	11.773	2	0	Median	1.7262	1.6326	NaN	1	0	Median	1.5605	1.6548	NaN	1	1	Median	1518600000	581450000	937200000	299740000	106220000	193530000	567020000	234320000	332700000	327460000	123090000	204370000	324430000	117820000	206610000	47928	5345	45123	288967;288968;288969;288970;288971;288972	387726;387727;387728;387729;387730;387731	387730			6	
SSPSGPSNPSNPSVEEK	1	Unmodified	1698.7697	0.7696723	3815	Q8WY22	BRI3BP	BRI3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	21.165	18.427	2	1.4175E-15	15485	160511_QHF_FH_JSI11i_1	178.58	143.89			1.0988	1.1341	9.3688	6	1	Median	1.3269	1.1052	NaN	1	1	Median	0.87004	1.0175	NaN	1	0	Median	1.1939	1.1508	17.012	2	0	Median	1.0988	1.1725	1.0496	2	0	Median	596500000	277490000	319010000	143030000	55710000	87317000	147570000	70320000	77251000	156950000	69405000	87549000	148950000	82054000	66894000	47929	3815	45124	288973;288974;288975;288976;288977;288978	387732;387733;387734;387735;387736;387737;387738	387732			7	
SSPSILAVQR	0	Unmodified	1056.5928	0.59275797	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				38.681	37.635	2	0.023218	32843	160511_QHF_FH_JSI9i_2	48.794	24.639			1.2049	1.0565	NaN	1	1	Median	1.2049	1.0565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17633000	9576500	8056100	17633000	9576500	8056100	0	0	0	0	0	0	0	0	0	47930	183	45125	288979	387739	387739			1	
SSPSLTILAGGK	1	Unmodified	1129.6343	0.63428844	1331	P30038	ALDH4A1	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.151	54.784	2	0.034304	46909	160511_QHF_FH_JSI12i_2	54.094	42.047			0.86111	0.93622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86111	0.93622	NaN	1	0	Median	25415000	13849000	11566000	0	0	0	0	0	0	0	0	0	25415000	13849000	11566000	47931	1331	45126	288980	387740	387740			0	
SSPSPQK	1	Unmodified	729.36572	0.36571815	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	4.5773	1.5423	2	0.0072762	2192	160511_QHF_FH_JSI12i_1	88.029	30.218			0.91671	0.9659	27.86	5	0	Median	NaN	NaN	NaN	0	0	Median	0.98954	1.2034	NaN	1	0	Median	0.96669	0.96871	18.041	2	0	Median	0.6988	0.75453	34.926	2	0	Median	823470000	424600000	398870000	0	0	0	275030000	141400000	133620000	248800000	125840000	122960000	299640000	157350000	142290000	47932	179	45127	288981;288982;288983;288984;288985	387741;387742;387743;387744;387745	387742			5	
SSPSTGSLDSGNESK	1	Unmodified	1451.6376	0.63759549	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	13.456	13.019	2	5.0846E-05	10419	160511_QHF_FH_JSI9i_1	78.324	48.58			0.81661	0.80566	19.881	4	3	Median	0.73388	0.62174	NaN	1	1	Median	0.66199	0.75132	NaN	1	1	Median	0.90866	0.86393	NaN	1	1	Median	0.96977	0.98981	NaN	1	0	Median	115940000	61210000	54727000	29663000	16430000	13233000	31630000	18863000	12767000	21902000	12991000	8911700	32741000	12926000	19815000	47933	2620	45128	288986;288987;288988;288989;288990	387746;387747;387748;387749;387750;387751	387751			6	
SSPSVKPAVDPAAAK	2	Unmodified	1423.7671	0.76709352	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	1	3	3	25.216	24.684	2;3	0.00017138	20295	160511_QHF_FH_JSI12i_3	57.328	47.276			1.0169	1.025	15.858	8	1	Median	0.90399	0.77058	NaN	1	1	Median	0.91406	1.1404	NaN	1	0	Median	1.2152	1.2329	12.523	3	0	Plateau	1.0015	1.0166	13.748	3	0	Median	865180000	458310000	406870000	112890000	61811000	51082000	98166000	57265000	40901000	268850000	132130000	136720000	385270000	207090000	178170000	47934	3042	45129	288991;288992;288993;288994;288995;288996;288997;288998	387752;387753;387754;387755;387756;387757;387758;387759;387760;387761;387762;387763	387762			12	
SSPSVKPAVDPAAAK	2	Acetyl (K)	1465.7777	0.77765821	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	50.151	40.828	2	0.0032587	18683	160513_QHF_FH_JSI12Kac_2	63.408	48.142			0.54225	0.5845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54225	0.5845	NaN	1	0	Median	3771000	2719900	1051100	0	0	0	0	0	0	625480	625480	0	3145500	2094400	1051100	47935	3042	45129	288999;289000	387764;387765;387766	387766	2746		3	
SSPSVLIHSLGK	1	Unmodified	1223.6874	0.68738664	5183	Q9P0K7	RAI14	Ankycorbin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				48.738	47.128	2	0.0025383	38603	160511_QHF_FH_JSI9i_3	70.1	65.317			0.40684	0.3337	NaN	1	1	Median	0.40684	0.3337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20803000	14516000	6286900	20803000	14516000	6286900	0	0	0	0	0	0	0	0	0	47936	5183	45130	289001	387767	387767			1	
SSPTDKHTLVK	2	Acetyl (K)	1253.6616	0.66156582	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	1	0	0	1			By MS/MS		14	0							2					2		30.143	21.164	2;3	4.6573E-12	13567	160513_QHF_FH_JSI11Kac_4	143.17	110.65			0.1103	0.10774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1103	0.10774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14560000	13467000	1092800	0	0	0	0	0	0	14560000	13467000	1092800	0	0	0	47937	1239;1168;2177;2758	45131	289002;289003	387768;387769	387768	1028		2	
SSPTVYNSPTDKEDYMTDLR	1	Unmodified	2318.0373	0.037256307	4244	Q96SK2	TMEM209	Transmembrane protein 209	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			53.159	52.755	3	1.9713E-05	47618	160511_QHF_FH_JSI10i_1	88.264	80.175			0.71639	0.801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71639	0.801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33044000	17892000	15152000	0	0	0	33044000	17892000	15152000	0	0	0	0	0	0	47938	4244	45132	289004	387770	387770			1	
SSPVAHSILWIWGR	0	Unmodified	1607.8572	0.85724593	3967	Q96AE7	TTC17	Tetratricopeptide repeat protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	83.806	75.942	2;3	2.1169E-82	41699	160513_QHF_FH_JSI11Kac_6	205.72	177.09			1.0032	0.96908	5.7379	6	0	Median	1.1056	0.95034	6.0626	2	0	Median	0.78326	0.91821	4.3244	2	0	Median	1.0564	1.0278	NaN	1	0	Median	0.9526	1.005	NaN	1	0	Median	586440000	303960000	282480000	110810000	53048000	57759000	272460000	153120000	119340000	98087000	43972000	54115000	105080000	53816000	51263000	47939	3967	45133	289005;289006;289007;289008;289009;289010	387771;387772;387773;387774;387775;387776	387771			5	
SSPVDLVTATDQK	1	Unmodified	1359.6882	0.6881745	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.5	7					3				2	4	3	1	53.55	50.63	2;3	1.5998E-12	45329	160511_QHF_FH_JSI10i_1	124.42	103.05			0.97111	0.99474	25.821	8	2	Median	1.4163	1.1599	4.7004	2	1	Median	0.73366	0.86577	48.626	2	1	Median	0.91756	0.88193	24.167	3	0	Median	0.79658	0.83927	NaN	1	0	Median	685490000	327160000	358330000	175800000	74716000	101080000	178430000	80625000	97808000	187080000	92574000	94503000	144180000	79242000	64938000	47940	1317	45134	289011;289012;289013;289014;289015;289016;289017;289018;289019;289020	387777;387778;387779;387780;387781;387782;387783;387784;387785;387786;387787;387788;387789	387785			12	
SSPVEALK	1	Unmodified	829.45453	0.45453316	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.334	23.806	2	0.01054	21092	160511_QHF_FH_JSI12i_1	63.565	38.933			0.68274	0.71347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68274	0.71347	NaN	1	1	Median	164330000	99075000	65250000	0	0	0	0	0	0	0	0	0	164330000	99075000	65250000	47941	3042	45135	289021	387790	387790			1	
SSPVEFECINEK	1	Unmodified	1437.6446	0.64459513	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	48.822	48.056	2	9.795E-08	43612	160511_QHF_FH_JSI12i_1	137.17	118.39			1.2365	1.2182	21.723	6	4	Median	1.3674	1.1171	14.534	2	1	Median	1.2367	1.4507	NaN	1	1	Median	1.1805	1.125	NaN	1	1	Median	1.4057	1.4948	31.22	2	1	Median	1358500000	592890000	765630000	273750000	125340000	148410000	213310000	100070000	113240000	323320000	137560000	185760000	548150000	229930000	318220000	47942	479	45136	289022;289023;289024;289025;289026;289027	387791;387792;387793;387794;387795;387796	387792			6	
SSPVVNDGVVR	0	Unmodified	1127.5935	0.59348625	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	29.139	25.629	2	0.00019551	22251	160511_QHF_FH_JSI9i_1	81.338	71.75			0.98353	0.99123	12.005	6	0	Median	1.1846	0.98254	NaN	1	0	Median	0.81733	0.98743	20.531	2	0	Median	0.95011	0.92242	11.421	2	0	Median	1.0277	1.0798	NaN	1	0	Median	934470000	483820000	450650000	192370000	82935000	109440000	274120000	160450000	113670000	222310000	115220000	107090000	245660000	125200000	120460000	47943	2314	45137	289028;289029;289030;289031;289032;289033;289034	387797;387798;387799;387800;387801;387802;387803;387804	387803			8	
SSPWNFAFTVK	1	Unmodified	1282.6346	0.63462279	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.62		1	1						3	1	1	1	2	83.222	76.102	2	2.1761E-09	40721	160513_QHF_FH_JSI11Kac_6	126.03	106.93			1.9072	1.4802	42.863	4	1	Linear	1.8197	1.5694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5176	1.4798	NaN	1	0	Median	0.89354	0.97459	59.128	2	1	Median	166500000	79363000	87141000	34191000	13588000	20603000	0	0	0	32018000	9683800	22335000	100290000	56091000	44204000	47944	4719	45138	289035;289036;289037;289038;289039	387805;387806;387807;387808;387809	387807			5	
SSPYPTDVAR	0	Unmodified	1091.5247	0.52473799	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	27.946	23.968	2	0.00018758	21326	160511_QHF_FH_JSI12i_1	82.279	48.106			1.058	1.1342	11.321	7	0	Median	1.2945	1.0821	NaN	1	0	Median	0.99407	1.1693	8.7632	2	0	Median	1.3256	1.2978	19.051	2	0	Median	1.0389	1.1162	3.2532	2	0	Median	929570000	478540000	451030000	206470000	90615000	115860000	198810000	137110000	61703000	258330000	112380000	145940000	265960000	138430000	127530000	47945	2185	45139	289040;289041;289042;289043;289044;289045;289046	387810;387811;387812;387813;387814;387815;387816;387817;387818;387819;387820	387813			11	
SSQEEVR	0	Unmodified	833.38791	0.38791015	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	14									6	4	2	2	2.4091	2.0512	2	0.0015705	1060	160511_QHF_FH_JSI10i_1	119.17	59.533			1.2392	1.1099	29.189	12	2	Median	1.2278	1.0058	10.418	5	1	Median	1.6203	1.9101	26.144	3	1	Plateau	1.3602	1.3138	45.562	2	0	Median	1.1213	1.1886	26.407	2	0	Median	2007600000	857620000	1150000000	264070000	125450000	138620000	753920000	307670000	446250000	506430000	201510000	304920000	483180000	222990000	260190000	47946	1775	45140	289047;289048;289049;289050;289051;289052;289053;289054;289055;289056;289057;289058;289059;289060	387821;387822;387823;387824;387825;387826;387827;387828;387829;387830;387831;387832;387833;387834;387835;387836;387837;387838;387839;387840;387841	387833			21	
SSQEIQER	0	Unmodified	975.46214	0.46213773	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	6.3142	5.9174	2	0.0016882	3943	160511_QHF_FH_JSI12i_1	86.136	12.519			0.93442	1.087	16.165	3	0	Median	1.3882	1.1421	NaN	1	0	Median	0.93442	1.087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8113	0.84489	NaN	1	0	Median	335700000	162510000	173190000	111310000	44457000	66849000	104770000	52965000	51801000	0	0	0	119620000	65089000	54535000	47947	5166	45141	289061;289062;289063	387842;387843;387844	387842			3	
SSQEQGELQGR	0	Unmodified	1217.5636	0.56364269	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.9174	8.2332	2	2.1046E-06	5780	160511_QHF_FH_JSI9i_1	121.6	80.574			2.3495	1.9544	NaN	1	1	Median	2.3495	1.9544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44665000	12984000	31681000	44665000	12984000	31681000	0	0	0	0	0	0	0	0	0	47948	481	45142	289064	387845	387845			1	
SSQGASNFDK	1	Unmodified	1039.4571	0.45705235	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			8.5192	8.2832	2	0.00057385	6126	160511_QHF_FH_JSI10i_1	82.008	10.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47949	3282	45143	289065	387846	387846			1	
SSQGKTEVK	2	Acetyl (K)	1004.5138	0.51383895	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	8.719	1.6368	2	0.034249	3486	160513_QHF_FH_JSI12Kac_3	47.198	16.943			0.76414	0.83209	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76414	0.83209	NaN	1	0	Median	3145800	1696000	1449800	0	0	0	0	0	0	0	0	0	3145800	1696000	1449800	47950	4059	45144	289066	387847	387847			1	
SSQGSSSSTQSAPSETASASK	1	Unmodified	1970.8665	0.86648581	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		9.8447	9.1117	2	1.6569E-85	6831	160511_QHF_FH_JSI11i_1	205.95	196.76			0.96836	0.82327	NaN	1	0	Median	0.96836	0.82327	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29035000	13438000	15597000	29035000	13438000	15597000	0	0	0	0	0	0	0	0	0	47951	5410	45145	289067;289068	387848;387849;387850	387848			3	
SSQGTSYDSYR	0	Unmodified	1249.5211	0.52110917	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	13.845	13.407	2	5.8015E-07	11103	160511_QHF_FH_JSI12i_1	113.44	111.52			1.1015	1.04	9.305	4	1	Median	1.2618	1.0517	NaN	1	1	Median	0.87802	1.0284	NaN	1	0	Median	1.3072	1.2448	NaN	1	0	Median	0.96165	1.0247	NaN	1	0	Median	143630000	73094000	70532000	23199000	11631000	11568000	41931000	22550000	19381000	38057000	19534000	18522000	40441000	19379000	21062000	47952	1892	45146	289069;289070;289071;289072;289073	387851;387852;387853;387854;387855;387856;387857;387858	387854			8	
SSQHKQDLTEK	2	Acetyl (K)	1341.6525	0.6524577	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	1	0	0	1			By MS/MS		14	0							2					2		14.209	6.5869	2;3	0.0018733	5974	160513_QHF_FH_JSI11Kac_4	58.098	44.962			0.32599	0.32004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32599	0.32004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16300000	13853000	2446900	0	0	0	0	0	0	16300000	13853000	2446900	0	0	0	47953	2252	45147	289074;289075	387859;387860	387859	2357		2	
SSQIGAVVSHQSSVIPDREYLR	0	Unmodified	2427.2506	0.2506354	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.309	56.764	3	0.0054412	46584	160511_QHF_FH_JSI9i_3	35.036	26.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47954	5048	45148	289076	387861	387861			1	
SSQLNNPQFVWVVPALR	0	Unmodified	1954.0425	0.042480522	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.36	100.16	2	5.7454E-11	87589	160511_QHF_FH_JSI9i_2	107.85	94.443			1.3143	1.4885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3143	1.4885	NaN	1	1	Median	10619000	6539900	4079600	0	0	0	0	0	0	0	0	0	10619000	6539900	4079600	47955	5468	45149	289077;289078;289079;289080	387862;387863;387864;387865	387863			4	
SSQPDPDK	1	Unmodified	872.38758	0.3875758	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0			By MS/MS	By matching	12	0					2							1	1	5.0945	-2.114	2	0.025584	1426	160513_QHF_FH_JSI11Kac_2	52.716	37.94			1.2454	1.29	12.259	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.442	1.4068	NaN	1	0	Median	1.0755	1.1829	NaN	1	0	Median	4511300	1753400	2757900	0	0	0	0	0	0	2572600	844970	1727600	1938800	908430	1030300	47956	1576	45150	289081;289082	387866	387866			1	
SSQPLASK	1	Unmodified	816.43413	0.43413207	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.75	5.8	1		1			1	1			1	1	1	1	8.1628	4.1948	2	0.00057183	5107	160511_QHF_FH_JSI12i_1	103.83	44.192			0.80636	0.75265	104.12	4	1	Median	0.76387	0.62535	NaN	1	0	Median	0.90069	1.0718	NaN	1	0	Median	0.11189	0.11086	NaN	1	1	Median	0.85122	0.90586	NaN	1	0	Median	1391100000	833440000	557630000	66730000	41287000	25443000	15485000	8860600	6624500	67253000	62963000	4290700	1241600000	720330000	521270000	47957	1109	45151	289083;289084;289085;289086	387867;387868;387869	387867			3	
SSQPLASKQEK	2	Acetyl (K)	1243.6408	0.64083038	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	0.789				1	5	7	2			1	5	3	6	21.937	13.798	2;3	2.2195E-15	5455	160513_QHF_FH_JSI9Kac_3	160.18	65.88			0.95142	1.0271	15.44	15	0	Median	1.6433	1.3324	NaN	1	0	Median	0.83639	1.0005	8.1154	5	0	Median	1.3992	1.3854	1.4363	3	0	Plateau	0.98419	1.0672	5.956	6	0	Median	399750000	181870000	217880000	101000000	37631000	63369000	89240000	47298000	41942000	50599000	19075000	31524000	158910000	77868000	81042000	47958	1109	45152	289087;289088;289089;289090;289091;289092;289093;289094;289095;289096;289097;289098;289099;289100;289101	387870;387871;387872;387873;387874;387875;387876;387877;387878;387879;387880;387881;387882;387883;387884;387885;387886;387887;387888;387889;387890;387891;387892	387876	966		23	
SSQPQAGSQGPQTFR	0	Unmodified	1574.7437	0.74373232	2392	Q13356	PPIL2	Peptidyl-prolyl cis-trans isomerase-like 2	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	19.817	19.509	2	0.00028274	16975	160511_QHF_FH_JSI12i_1	81.565	46.678			1.2519	1.2192	19.765	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1061	1.0602	NaN	1	0	Median	1.4168	1.4021	NaN	1	0	Median	35747000	17899000	17849000	0	0	0	0	0	0	20357000	9508000	10849000	15391000	8390500	7000100	47959	2392	45153	289102;289103;289104	387893;387894;387895	387894			3	
SSQQPSTPQQAPPGQPQQGTFVAHK	1	Unmodified	2630.2837	0.28372644	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							2	2	5	2	33.297	32.826	3	1.5318E-09	29273	160511_QHF_FH_JSI11i_1	81.553	77.891			0.95216	0.98821	11.442	8	2	Median	1.3731	1.1236	NaN	1	0	Median	0.87484	1.0475	12.346	2	0	Median	0.95016	0.90855	10.882	4	2	Median	0.97315	1.0173	NaN	1	0	Median	353830000	193710000	160120000	43172000	21497000	21674000	103080000	59048000	44032000	161670000	87528000	74146000	45905000	25641000	20264000	47960	3341	45154	289105;289106;289107;289108;289109;289110;289111;289112;289113;289114;289115	387896;387897;387898;387899;387900;387901;387902;387903;387904;387905;387906;387907;387908;387909;387910;387911;387912;387913;387914;387915;387916	387900			20	
SSQQPSTPQQAPPGQPQQGTFVAHKEIK	2	Acetyl (K)	3042.5159	0.51591122	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS		14.4	0.8						1	1	3		1	2	2		56.483	46.006	3	0.0043881	24333	160513_QHF_FH_JSI9Kac_5	45.957	39.234			1.0645	1.0441	9.5027	5	0	Median	1.1212	0.94892	NaN	1	0	Median	0.84775	0.99096	15.04	2	0	Median	1.0966	1.0735	3.9221	2	0	Median	NaN	NaN	NaN	0	0	Median	24439000	10809000	13630000	3882400	1618200	2264200	4651900	2269100	2382800	15904000	6921400	8982900	0	0	0	47961	3341	45155	289116;289117;289118;289119;289120	387917;387918;387919;387920;387921;387922	387917	2848		6	
SSQQQTQPQK	1	Unmodified	1158.5629	0.56291441	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.6624	4.3483	2	2.4358E-101	2237	160511_QHF_FH_JSI11i_1	271.37	247.41			1.0478	1.0129	12.746	4	0	Median	1.0827	0.90401	NaN	1	0	Median	1.0141	1.201	NaN	1	0	Median	1.1152	1.0772	NaN	1	0	Median	0.90099	0.95238	NaN	1	0	Median	1805500000	918990000	886490000	209510000	105510000	104000000	485650000	242970000	242680000	489050000	239900000	249140000	621270000	330600000	290670000	47962	3438	45156	289121;289122;289123;289124	387923;387924;387925;387926;387927;387928;387929;387930	387924			8	
SSQQRENDEEMKAAKEK	3	2 Acetyl (K)	2090.9539	0.95386103	717	O95696	BRD1	Bromodomain-containing protein 1	yes	yes	2	0	0	3				By MS/MS	14	0							1						1	29.366	21.116	3	0.0021742	12805	160513_QHF_FH_JSI12Kac_4	65.107	51.275			1.1464	1.2414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1464	1.2414	NaN	1	0	Median	7595200	3691600	3903600	0	0	0	0	0	0	0	0	0	7595200	3691600	3903600	47963	717	45157	289125	387931;387932	387931	354;355		2	
SSQSHPDGLSGR	0	Acetyl (Protein N-term)	1268.5745	0.57454173	1880	P56524	HDAC4	Histone deacetylase 4	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.442	11.312	2	1.9672E-05	9172	160511_QHF_FH_JSI12i_1	86.344	81.185			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47964	1880	45158	289126;289127;289128	387933;387934;387935	387934			3	
SSQSSSQQFSGIGR	0	Unmodified	1454.675	0.67498405	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.33	4	4	2				2	1		3	3	4	3	24.886	22.304	2	7.5121E-136	19248	160511_QHF_FH_JSI9i_1	292.73	267.07			1.1034	1.0919	15.731	13	0	Median	1.0838	0.88285	12.003	3	0	Median	0.90691	1.0919	8.6785	3	0	Plateau	1.2377	1.2088	5.7618	4	0	Median	1.1034	1.1446	14.247	3	0	Median	2123100000	987460000	1135700000	446660000	196900000	249760000	429000000	232160000	196850000	555220000	251480000	303740000	692250000	306920000	385330000	47965	3893	45159	289129;289130;289131;289132;289133;289134;289135;289136;289137;289138;289139;289140;289141	387936;387937;387938;387939;387940;387941;387942;387943;387944;387945;387946;387947;387948;387949;387950;387951;387952;387953;387954;387955;387956;387957;387958;387959	387951			24	
SSQTSGTNEQSSAIVSAR	0	Unmodified	1808.85	0.85004788	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	23.369	19.802	2	2.3385E-237	17162	160511_QHF_FH_JSI12i_1	349.57	289.05			1.0289	0.99637	6.9221	7	0	Median	1.3069	1.0891	NaN	1	0	Median	0.80621	0.94637	1.6583	2	0	Median	1.0522	1.0194	3.2341	2	0	Median	0.9798	1.0461	10.397	2	0	Median	523630000	268780000	254850000	97563000	44033000	53531000	117570000	66075000	51494000	152260000	76743000	75515000	156240000	81930000	74307000	47966	446	45160	289142;289143;289144;289145;289146;289147;289148	387960;387961;387962;387963;387964;387965;387966;387967;387968;387969;387970;387971	387963			12	
SSRLEEDDGDVAMSDAQDGPR	0	Unmodified	2248.9502	0.95023221	5257	Q9UBU9	NXF1	Nuclear RNA export factor 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			34.837	33.881	3	0.00072663	29763	160511_QHF_FH_JSI10i_2	46.415	37.921			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47967	5257	45161	289149	387972	387972			1	
SSRLPDIFEAQIAGLR	0	Unmodified	1771.9581	0.95808219	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS				3	0			1							1				88.409	87.237	3	0.00057088	71473	160511_QHF_FH_JSI9i_3	80.632	61.697		+	1.1729	1.0027	NaN	1	1	Median	1.1729	1.0027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8128400	3678400	4450100	8128400	3678400	4450100	0	0	0	0	0	0	0	0	0	47968	53;71	45162	289150	387973	387973			1	
SSSADFGTFNTSQSHQTASAVSK	1	Unmodified	2344.0567	0.056746196	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.97	1	4	2				1			1	1	4	2	39.596	37.758	3	3.3798E-30	32113	160511_QHF_FH_JSI12i_3	169.9	166.66			1.049	1.0518	10.569	8	0	Median	1.1157	0.97898	NaN	1	0	Median	0.75011	0.90688	NaN	1	0	Median	1.0417	1.1042	8.1071	4	0	Linear	0.90739	1.0365	14.222	2	0	Median	707350000	367060000	340280000	99279000	47663000	51615000	120610000	72408000	48201000	321260000	167330000	153930000	166200000	79664000	86539000	47969	1774	45163	289151;289152;289153;289154;289155;289156;289157;289158	387974;387975;387976;387977;387978;387979;387980;387981;387982;387983;387984;387985;387986;387987;387988;387989	387989			16	
SSSADSLSTTK	1	Unmodified	1082.5091	0.5091475	5476	Q9UQ84	EXO1	Exonuclease 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.7243	9.5971	2	0.0035734	7256	160511_QHF_FH_JSI11i_1	55.649	29.265			1.1957	1.174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1957	1.174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95002000	41153000	53849000	0	0	0	0	0	0	95002000	41153000	53849000	0	0	0	47970	5476	45164	289159	387990	387990			1	
SSSAGSGHQPSQSR	0	Acetyl (Protein N-term)	1413.6233	0.62328283	2436	Q13542	EIF4EBP2	Eukaryotic translation initiation factor 4E-binding protein 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.5336	2.2387	2	8.684E-18	2943	160511_QHF_FH_JSI11i_1	211.22	183.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47971	2436	45165	289160;289161;289162;289163;289164;289165;289166	387991;387992;387993;387994;387995;387996;387997	387991			7	
SSSASSPEMK	1	Unmodified	1009.4386	0.4386251	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.0812	6.97	2	0.00028941	4607	160511_QHF_FH_JSI11i_1	79.148	26.432			1.3395	1.3001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3395	1.3001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96661000	44425000	52236000	0	0	0	0	0	0	96661000	44425000	52236000	0	0	0	47972	5474	45166	289167	387998	387998			1	
SSSASSPEMK	1	Oxidation (M)	1025.4335	0.43353972	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				7.6111	6.9687	2	0.012019	4561	160511_QHF_FH_JSI9i_1	56.916	33.147			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47973	5474	45166	289168	387999	387999		2669	1	
SSSDHEATAMMK	1	Unmodified	1293.5329	0.53293619	3605	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	2	1	12.294	11.85	2;3	2.6849E-05	9134	160511_QHF_FH_JSI11i_2	73.466	67.624			0.87558	1.0399	18.637	7	0	Median	0.87421	0.76459	NaN	1	0	Median	0.84677	1.0399	21.259	3	0	Median	1.0552	1.0557	13.567	2	0	Median	1.0498	1.1374	NaN	1	0	Median	402070000	218160000	183910000	27345000	12577000	14769000	152640000	94909000	57727000	177840000	89973000	87865000	44250000	20701000	23549000	47974	3605	45167	289169;289170;289171;289172;289173;289174;289175	388000;388001;388002;388003;388004	388003			5	
SSSDNNTNTLGR	0	Unmodified	1264.5644	0.56437097	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	7.6822	7.3345	2	1.7043E-05	5215	160511_QHF_FH_JSI12i_1	112.83	98.676			1.0244	1.0286	18.922	4	0	Median	1.2863	1.0776	NaN	1	0	Median	1.1049	1.3226	NaN	1	0	Median	0.88228	0.84108	NaN	1	0	Median	0.9497	0.98178	NaN	1	0	Median	184280000	82463000	101810000	36435000	16411000	20025000	54146000	24071000	30075000	47053000	17508000	29545000	46643000	24473000	22170000	47975	5409	45168	289176;289177;289178;289179	388005;388006	388005			2	
SSSDPQAQK	1	Unmodified	946.43559	0.43558863	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	1.2827	1.0324	2	8.3942E-05	511	160511_QHF_FH_JSI12i_1	113.5	73.836			1.0933	1.0959	29.062	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2461	1.3989	15.995	2	0	Median	0.90298	0.86018	NaN	1	1	Median	0.88141	0.91044	26.223	2	1	Median	115740000	50947000	64796000	0	0	0	38155000	16193000	21962000	30340000	12852000	17488000	47248000	21903000	25346000	47976	2291	45169	289180;289181;289182;289183;289184;289185	388007;388008;388009;388010;388011;388012	388010			6	
SSSDPQAQKYIAESK	2	Acetyl (K)	1679.8002	0.80024414	2291	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		43.24	34.03	2	0.010803	19298	160513_QHF_FH_JSI11Kac_3	63.727	50.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1101800	1101800	0	0	0	0	0	0	0	1101800	1101800	0	0	0	0	47977	2291	45170	289186	388013	388013	2407		1	
SSSDTNESEIK	1	Unmodified	1195.5204	0.52044047	3241	Q7LG56	RRM2B	Ribonucleoside-diphosphate reductase subunit M2 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	8.2925	7.9431	2	7.5027E-05	5853	160511_QHF_FH_JSI12i_1	100.88	67.616			0.80761	0.80764	22.619	4	1	Median	1.1421	0.93857	NaN	1	0	Median	0.59368	0.69497	NaN	1	0	Median	1.0466	1.0225	NaN	1	0	Median	0.62319	0.64196	NaN	1	1	Median	194350000	96627000	97725000	54389000	21133000	33256000	42377000	27327000	15050000	45398000	17313000	28085000	52187000	30854000	21333000	47978	3241	45171	289187;289188;289189;289190	388014;388015;388016;388017	388014			4	
SSSESYTQSFQSR	0	Unmodified	1492.643	0.64301522	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.664	24.137	2	0.0047318	21416	160511_QHF_FH_JSI12i_1	62.466	45.795			2.8146	2.8254	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8146	2.8254	NaN	1	1	Median	27621000	8871500	18750000	0	0	0	0	0	0	0	0	0	27621000	8871500	18750000	47979	4422	45172	289191	388018	388018			1	
SSSGLLEWESK	1	Unmodified	1221.5877	0.58773217	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.37	3	4	3				2	4	1	4	5	4	4	57.804	53.248	2	1.2715E-37	46720	160511_QHF_FH_JSI9i_2	198.25	170.95			0.96705	1.0089	24.918	16	2	Median	1.1489	0.98907	10.445	3	0	Plateau	0.97406	1.1349	35.846	5	1	Median	0.96246	0.96447	16.692	4	1	Median	0.90213	1.0111	19.239	4	0	Median	2679800000	1366500000	1313300000	407240000	190910000	216330000	669660000	367410000	302250000	990980000	520340000	470640000	611880000	287810000	324070000	47980	1063	45173	289192;289193;289194;289195;289196;289197;289198;289199;289200;289201;289202;289203;289204;289205;289206;289207;289208	388019;388020;388021;388022;388023;388024;388025;388026;388027;388028;388029;388030;388031;388032;388033;388034;388035;388036;388037;388038;388039;388040;388041;388042;388043;388044;388045;388046;388047	388033			29	
SSSGLNHILAALTIFLK	1	Unmodified	1784.0196	0.019619815	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	98.597	89.324	3	0.00021252	51318	160513_QHF_FH_JSI9Kac_6	94.281	87.331			0.93828	0.84639	8.7282	2	2	Median	0.93205	0.79574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94455	0.90028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	112500000	44788000	67713000	61709000	26532000	35177000	0	0	0	50791000	18256000	32535000	0	0	0	47981	2386	45174	289209;289210;289211;289212	388048;388049;388050;388051	388050			4	
SSSGLNSEK	1	Acetyl (Protein N-term)	949.43525	0.43525428	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	1	0	0		By MS/MS	By MS/MS		11	0				2							1	1		14.112	6.5935	2	0.023062	4218	160513_QHF_FH_JSI10Kac_1	41.448	35.409			0.88247	0.91512	10.722	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76072	0.8483	NaN	1	0	Median	1.0237	0.98719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6069600	3078600	2991000	0	0	0	1802000	857840	944120	4267700	2220800	2046900	0	0	0	47982	2475	45175	289213;289214	388052;388053	388053			1	
SSSHFNPDPDAETLYK	1	Unmodified	1806.8061	0.8060578	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	43.667	43.053	3	1.9083E-05	37747	160511_QHF_FH_JSI10i_2	64.537	60.435			0.9647	0.95042	11.201	8	0	Median	1.008	0.88975	NaN	1	0	Median	0.84946	1.0132	4.5947	2	0	Median	0.92323	0.91597	5.4854	3	0	Median	1.0778	1.1295	0.99878	2	0	Median	392630000	207280000	185350000	30541000	14550000	15991000	108250000	60501000	47752000	140330000	68810000	71515000	113510000	63422000	50090000	47983	2986	45176	289215;289216;289217;289218;289219;289220;289221;289222	388054;388055;388056;388057;388058;388059;388060;388061;388062;388063	388063			10	
SSSHLPANSQDVQGYITNQSPESIVEEAQGK	1	Unmodified	3299.5542	0.5542068	489	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		76.82	76.82	3	6.5929E-11	68602	160511_QHF_FH_JSI11i_3	75.275	69.372			1.019	0.94593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.019	0.94593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16070000	4297900	11772000	0	0	0	0	0	0	16070000	4297900	11772000	0	0	0	47984	489	45177	289223	388064	388064			1	
SSSHSLSHKGK	2	Acetyl (K)	1195.5945	0.59454889	1850	P55198	MLLT6	Protein AF-17	yes	yes	1	0	0	1		By matching		By MS/MS	16	0									2		1		1	5.9481	-0.93627	3	0.0073294	1897	160513_QHF_FH_JSI12Kac_6	44.543	34.311			0.79959	0.90077	12.701	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83881	0.98541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76221	0.8234	NaN	1	0	Median	10607000	5889800	4717200	0	0	0	4224700	2181300	2043400	0	0	0	6382300	3708500	2673800	47985	1850	45178	289224;289225	388065	388065	1861		1	
SSSLEMTPYNTPQLSPATTPANKK	2	Unmodified	2562.2636	0.26356785	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	58.659	57.493	3	3.8646E-11	50391	160511_QHF_FH_JSI9i_2	94.707	91.742			1.2016	1.1765	67.721	2	1	Median	0.85808	0.72882	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6828	1.8991	NaN	1	1	Median	120210000	41313000	78893000	51683000	19842000	31841000	0	0	0	0	0	0	68523000	21471000	47052000	47986	2591	45179	289226;289227;289228	388066;388067;388068;388069	388067			4	
SSSLGSFYHLPSYLK	1	Unmodified	1684.8461	0.84607213	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.021	74.231	3	9.9779E-05	62422	160511_QHF_FH_JSI10i_3	57.414	46.47			1.0113	0.89129	18.584	4	2	Median	1.1001	0.89912	NaN	1	0	Median	0.57958	0.68338	NaN	1	0	Median	0.96113	0.88352	NaN	1	1	Median	1.0642	1.0732	NaN	1	1	Median	156090000	87523000	68568000	20037000	10888000	9148700	26630000	17836000	8793800	53308000	28479000	24829000	56116000	30319000	25797000	47987	1549	45180	289229;289230;289231;289232	388070;388071;388072;388073;388074	388072			5	
SSSLPASQNNLRH	0	Unmodified	1409.7011	0.70113922	5546	Q9Y2Y0	ARL2BP	ADP-ribosylation factor-like protein 2-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			16.325	15.293	2;3	2.3451E-07	12307	160511_QHF_FH_JSI10i_3	128.08	126.08			1.2442	1.2082	18.631	4	1	Median	1.6402	1.3472	3.3676	2	1	Median	0.86298	1.0076	13.639	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154250000	74090000	80161000	59838000	25493000	34345000	94413000	48597000	45816000	0	0	0	0	0	0	47988	5546	45181	289233;289234;289235;289236;289237	388075;388076;388077;388078;388079;388080;388081	388076			7	
SSSPAPADIAQTVQEDLR	0	Unmodified	1883.9225	0.92248455	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	78.058	77.613	2;3	2.2229E-66	70483	160511_QHF_FH_JSI10i_1	234.22	181.97			1.0356	0.98705	3.93	5	1	Median	1.1425	0.94525	NaN	1	0	Median	0.79251	0.9247	NaN	1	0	Median	1.0468	1.0011	2.0021	2	1	Median	0.94276	0.9996	NaN	1	0	Median	923470000	466580000	456890000	216430000	101170000	115260000	246450000	138420000	108030000	254180000	117880000	136290000	206420000	109110000	97310000	47989	2381	45182	289238;289239;289240;289241;289242	388082;388083;388084;388085;388086;388087;388088;388089;388090;388091;388092;388093;388094	388091			13	
SSSPELVTHLK	1	Unmodified	1196.6401	0.6401021	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.61		4						2	1	4	1	1	1	35.867	30.445	2;3	2.5926E-05	25681	160511_QHF_FH_JSI12i_2	99.973	91.753			1.075	1.0752	13.179	6	1	Median	0.97982	0.83641	14.179	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.0938	1.0935	NaN	1	0	Median	1.0565	1.1406	NaN	1	0	Median	207070000	100660000	106420000	159880000	74231000	85653000	0	0	0	3893800	1943200	1950600	43296000	24482000	18814000	47990	2261	45183	289243;289244;289245;289246;289247;289248;289249	388095;388096;388097;388098;388099	388095			5	
SSSPFTPLQK	1	Unmodified	1090.5659	0.56587452	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS		By matching		2	0		2								1		1		41.002	40.245	2	0.012789	35293	160511_QHF_FH_JSI9i_2	44.753	35.539			0.64066	0.59199	10.024	2	0	Median	0.63407	0.55148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64732	0.63547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78333000	41070000	37263000	28406000	15358000	13048000	0	0	0	49927000	25713000	24215000	0	0	0	47991	3022	45184	289250;289251	388100	388100			1	
SSSPGKPQAVSSLNSSHSR	1	Acetyl (K)	1953.9504	0.95043063	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.748							4	4	2	2	3	3	2	37.319	27.847	3	4.1519E-06	14698	160513_QHF_FH_JSI10Kac_5	83.229	72.762			1.0926	0.97951	66.425	7	1	Median	1.0852	0.94579	4.9541	2	0	Median	0.71294	0.84726	8.4627	2	0	Median	2.7031	2.6432	102.82	2	1	Median	1.0926	1.1868	NaN	1	0	Median	102660000	52337000	50327000	24227000	12137000	12090000	27097000	17442000	9655600	30285000	12749000	17536000	21055000	10010000	11045000	47992	5294	45185	289252;289253;289254;289255;289256;289257;289258;289259;289260;289261	388101;388102;388103;388104;388105;388106;388107;388108;388109;388110;388111;388112;388113;388114	388111	3356		14	
SSSPLSK	1	Acetyl (Protein N-term)	746.38103	0.38103386	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	1	0	0	By matching	By matching	By MS/MS		1	0	3									1	1	1		17.197	16.708	1	0.047644	14181	160511_QHF_FH_JSI11i_1	34.003	14.441			0.7988	0.95846	6.5234	3	0	Plateau	1.3345	1.0808	NaN	1	0	Median	0.79804	0.95385	NaN	1	0	Median	1.0958	1.0489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142980000	80297000	62679000	42365000	22350000	20015000	54027000	31394000	22633000	46584000	26553000	20031000	0	0	0	47993	1208	45186	289262;289263;289264	388115	388115			0	
SSSPVKR	1	Acetyl (K);Acetyl (Protein N-term)	843.44503	0.4450311	1471	P37837	TALDO1	Transaldolase	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.5	0.764				4	1	1					1	1	4	18.486	11.141	2	0.0020557	5445	160513_QHF_FH_JSI10Kac_1	85.265	59.156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47994	1471	45187	289265;289266;289267;289268;289269;289270	388116;388117;388118;388119;388120;388121	388120	1460		6	
SSSPVNVK	1	Acetyl (Protein N-term)	858.4447	0.44469675	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.216	21.685	2	0.003748	18468	160511_QHF_FH_JSI9i_1	42.869	24.064			0.92021	0.87033	6.1124	4	0	Linear	1.1516	0.95283	NaN	1	0	Median	0.83671	0.99396	NaN	1	0	Median	1.012	0.98046	NaN	1	0	Median	0.83133	0.86782	NaN	1	0	Median	1999400000	933650000	1065800000	492750000	224650000	268090000	448190000	212890000	235300000	481250000	199780000	281470000	577220000	296320000	280900000	47995	2161	45188	289271;289272;289273;289274	388122;388123;388124;388125	388125			4	
SSSPVNVKK	2	Acetyl (Protein N-term)	986.53966	0.53965977	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	16.443	14.577	2	0.00032889	12342	160511_QHF_FH_JSI12i_1	74.127	64.14			0.88951	0.86931	9.597	5	0	Median	1.0813	0.89223	NaN	1	0	Median	0.92739	1.073	NaN	1	0	Median	0.8811	0.86054	1.4341	2	0	Median	0.81447	0.86193	NaN	1	0	Median	993930000	505080000	488850000	319530000	155760000	163770000	205360000	112770000	92594000	175940000	88941000	87004000	293090000	147610000	145480000	47996	2161	45189	289275;289276;289277;289278;289279	388126;388127;388128;388129;388130;388131;388132	388128			7	
SSSPVNVKK	2	Acetyl (K);Acetyl (Protein N-term)	1028.5502	0.55022446	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	1	0	1		By MS/MS		By MS/MS	11	0				3							2		1	38.074	29.277	2	0.012914	12449	160513_QHF_FH_JSI12Kacf_1	35.295	15.509			0.8694	0.92423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8694	0.92423	NaN	1	0	Median	4406700	2517000	1889700	0	0	0	0	0	0	0	0	0	4406700	2517000	1889700	47997	2161	45189	289280;289281;289282	388133;388134;388135	388133	2279		3	
SSSQEAVQMLSSVR	0	Unmodified	1507.7301	0.73005609	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.579	56.642	2	1.6121E-14	48533	160511_QHF_FH_JSI12i_2	155.86	131.87			1.1522	1.2146	9.206	4	0	Median	1.3242	1.1307	NaN	1	0	Median	1.1004	1.3416	NaN	1	0	Median	1.1091	1.1282	NaN	1	0	Median	1.1969	1.3048	NaN	1	0	Median	200310000	86478000	113830000	37570000	16149000	21421000	49030000	19626000	29404000	75497000	35109000	40388000	38216000	15594000	22622000	47998	3103	45190	289283;289284;289285;289286	388136;388137;388138;388139;388140	388136			5	
SSSQIPAQPSVAK	1	Unmodified	1298.683	0.68302954	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	30.069	26.774	2	2.0276E-08	23554	160511_QHF_FH_JSI10i_1	141.1	129.87			0.81353	0.84366	7.7222	6	1	Median	1.0862	0.893	NaN	1	0	Median	0.70885	0.82	NaN	1	0	Median	0.86322	0.82842	12.96	2	0	Median	0.76115	0.81754	8.4717	2	1	Median	601570000	319470000	282100000	122260000	56628000	65630000	165930000	100360000	65566000	148630000	80942000	67686000	164750000	81537000	83214000	47999	5646	45191	289287;289288;289289;289290;289291;289292	388141;388142;388143;388144;388145;388146;388147	388146			7	
SSSQTSGSLVSK	1	Unmodified	1166.5779	0.57789577	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				2	2	2	2	12.779	10.57	2	1.3509E-10	8843	160511_QHF_FH_JSI10i_1	167.12	111.44			0.94893	0.99956	18.936	8	4	Median	1.0128	0.83333	27.582	2	2	Median	0.81809	0.97014	13.187	2	0	Median	1.0359	1.0199	4.6998	2	0	Median	0.83341	0.86156	31.67	2	2	Median	681120000	385750000	295370000	200440000	105450000	94994000	111260000	69600000	41665000	115880000	62013000	53870000	253530000	148690000	104840000	48000	5113	45192	289293;289294;289295;289296;289297;289298;289299;289300	388148;388149;388150;388151;388152;388153;388154;388155;388156;388157	388153			10	
SSSQTSTSQLPSK	1	Unmodified	1336.647	0.64703797	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0			By MS/MS		13	0						2						2		18.897	11.473	2	0.011069	8178	160513_QHF_FH_JSI11Kac_3	62.303	37.448			0.66494	0.65221	66.784	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66494	0.65221	66.784	2	2	Median	NaN	NaN	NaN	0	0	Median	2956500	1440700	1515800	0	0	0	0	0	0	2956500	1440700	1515800	0	0	0	48001	5113	45193	289301;289302	388158;388159	388158			2	
SSSQVPPILQETDK	1	Unmodified	1527.7781	0.77805214	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	1	4	53.127	52.461	2	1.6027E-06	46310	160511_QHF_FH_JSI9i_1	132.56	99.302			0.82352	0.86758	8.1565	5	2	Median	1.0934	0.89504	NaN	1	0	Median	0.65775	0.77368	NaN	1	0	Median	0.97614	0.96896	NaN	1	0	Median	0.82128	0.85982	1.2707	2	2	Median	570550000	291800000	278750000	138010000	63810000	74196000	113850000	58736000	55114000	102830000	55185000	47648000	215860000	114070000	101790000	48002	3323	45194	289303;289304;289305;289306;289307;289308;289309	388160;388161;388162;388163;388164;388165;388166;388167;388168;388169;388170;388171;388172;388173;388174;388175;388176;388177	388174			18	
SSSQYIESFWQSSQSQNFTAHDK	1	Unmodified	2691.1837	0.18373762	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	75.206	71.676	3	1.2724E-126	36884	160513_QHF_FH_JSI9Kac_6	255.67	246.58			1.0659	1.0453	21.769	11	1	Median	1.23	1.0454	5.3345	2	0	Median	0.69274	0.85716	18.913	3	0	Plateau	0.94733	0.89909	8.2677	3	1	Plateau	1.485	1.5662	18.519	3	0	Median	598740000	292110000	306630000	126880000	49544000	77337000	179030000	94446000	84588000	208300000	109170000	99129000	84530000	38949000	45581000	48003	2906	45195	289310;289311;289312;289313;289314;289315;289316;289317;289318;289319;289320	388178;388179;388180;388181;388182;388183;388184;388185;388186;388187;388188;388189;388190;388191;388192;388193;388194;388195;388196;388197;388198;388199;388200	388193			23	
SSSSGHYVSWVK	1	Unmodified	1322.6255	0.62551466	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.22		5	10						7	7	7	4	4	32.137	28.47	2;3	5.0611E-16	24821	160511_QHF_FH_JSI10i_2	161.17	137.14			1.0304	1.0454	28.189	20	5	Median	1.2997	1.171	27.73	5	2	Median	0.9149	1.0825	9.5112	7	2	Median	1.0589	1.0198	54.139	4	1	Median	0.91306	0.95892	8.8168	4	0	Median	4163100000	2041800000	2121300000	271920000	112230000	159690000	854630000	403420000	451220000	1401500000	671080000	730440000	1635000000	855030000	779950000	48004	1824	45196	289321;289322;289323;289324;289325;289326;289327;289328;289329;289330;289331;289332;289333;289334;289335;289336;289337;289338;289339;289340;289341;289342	388201;388202;388203;388204;388205;388206;388207;388208;388209;388210;388211;388212;388213;388214;388215;388216;388217;388218;388219;388220;388221;388222;388223;388224;388225;388226;388227;388228;388229;388230;388231;388232	388218			32	
SSSSGSVGESSSK	1	Unmodified	1184.5157	0.51568944	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				13	0						1				1				5.9887	-11.823	2	0.030351	1764	160513_QHF_FH_JSI9Kac_3	51.092	22.693		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	847140	847140	0	847140	847140	0	0	0	0	0	0	0	0	0	0	48005	56	45197	289343	388233	388233			1	
SSSSLLASPGHISVK	1	Unmodified	1468.7886	0.78855725	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.55		5	7					1	1	5	4	3	2	45.662	43.554	2;3	7.249E-07	38039	160511_QHF_FH_JSI9i_2	166.04	142.19			0.95252	0.92642	37.97	14	5	Median	1.026	0.89369	45.106	5	2	Median	0.81825	0.98758	41.965	4	2	Median	1.0518	1.0186	43.986	3	1	Plateau	0.92122	0.93193	4.8753	2	0	Median	1995000000	991000000	1004000000	191610000	91265000	100340000	325070000	178720000	146350000	717510000	349490000	368030000	760850000	371520000	389320000	48006	6	45198	289344;289345;289346;289347;289348;289349;289350;289351;289352;289353;289354;289355;289356;289357	388234;388235;388236;388237;388238;388239;388240;388241;388242;388243;388244;388245;388246;388247;388248;388249;388250;388251	388243			18	
SSSSPLVVVSVK	1	Unmodified	1187.6762	0.67615325	3975	Q96B01	RAD51AP1	RAD51-associated protein 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		63.857	52.793	2	0.014133	29740	160513_QHF_FH_JSI11Kac_4	53.751	23.942			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48007	3975	45199	289358	388252	388252			1	
SSSSQTQPLK	1	Unmodified	1061.5353	0.53530267	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.0593	7.3751	2	0.00077176	5031	160511_QHF_FH_JSI9i_1	83.783	61.697			1.4154	1.1641	NaN	1	1	Median	1.4154	1.1641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62373000	21526000	40847000	62373000	21526000	40847000	0	0	0	0	0	0	0	0	0	48008	2574	45200	289359	388253	388253			1	
SSSSQVVGPVQEEEYVAEK	1	Unmodified	2050.9695	0.96949432	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	51.885	51.213	2	1.1989E-13	46369	160511_QHF_FH_JSI11i_1	143.64	114.31			0.84518	0.8151	7.072	4	3	Median	0.99969	0.83466	NaN	1	1	Median	0.65336	0.7432	NaN	1	1	Median	0.83181	0.796	NaN	1	1	Median	0.85877	0.87748	NaN	1	0	Median	94405000	54343000	40062000	23654000	13481000	10173000	24448000	14611000	9837000	20485000	12845000	7640500	25818000	13406000	12412000	48009	3869	45201	289360;289361;289362;289363;289364	388254;388255;388256;388257;388258;388259	388254			6	
SSSSSAASDTATSTQRPLR	0	Unmodified	1908.9137	0.91371077	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS			4.5	4.72		3	2					1		4	2			15.61	13.381	3	3.0888E-08	10850	160511_QHF_FH_JSI9i_3	83.253	60.45			1.2983	1.1168	23.884	6	3	Median	1.2983	1.0779	21.52	4	2	Median	1.1008	1.3462	33.066	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185520000	84377000	101140000	128910000	53384000	75526000	56612000	30993000	25619000	0	0	0	0	0	0	48010	4254	45202	289365;289366;289367;289368;289369;289370	388260;388261;388262;388263;388264;388265;388266	388262			7	
SSSSSGVPYSPAIPNK	1	Unmodified	1576.7733	0.77330111	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.079	43.414	2	2.6822E-05	38453	160511_QHF_FH_JSI9i_1	112.84	95.478			1.2386	1.2476	6.0974	4	4	Median	1.4604	1.1795	NaN	1	1	Median	1.1415	1.3364	NaN	1	1	Median	1.2249	1.1979	NaN	1	1	Median	1.2525	1.2995	NaN	1	1	Median	215570000	101070000	114500000	49484000	21453000	28031000	56540000	27147000	29394000	56489000	26177000	30311000	53055000	26290000	26766000	48011	5465	45203	289371;289372;289373;289374	388267;388268;388269;388270;388271	388271			5	
SSSSSSASAAAAAAAASSSASCSR	0	Unmodified	2088.8978	0.89780271	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	32.118	31.541	2	9.3672E-105	28354	160511_QHF_FH_JSI11i_1	221.31	216.04			1.4003	1.4417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4003	1.4417	NaN	1	0	Median	34584000	16211000	18373000	0	0	0	0	0	0	0	0	0	34584000	16211000	18373000	48012	2252	45204	289375;289376	388272;388273;388274	388272			3	
SSSSTNTSLLTSK	1	Unmodified	1311.6518	0.65178899	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	24.824	23.819	2	6.0745E-05	21009	160511_QHF_FH_JSI12i_1	107.09	84.753			0.65728	0.68839	39.653	3	2	Median	0.83457	0.67916	56.067	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65728	0.68839	NaN	1	0	Median	163070000	85634000	77439000	103790000	52709000	51078000	0	0	0	0	0	0	59285000	32924000	26361000	48013	5113	45205	289377;289378;289379	388275;388276;388277;388278	388275			4	
SSSSYHTWNTGTEGPFVER	0	Unmodified	2140.945	0.9450109	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	3	1		48.749	48.08	3	3.8698E-06	40201	160511_QHF_FH_JSI10i_3	67.43	58.499			0.99827	1.0409	34.491	3	1	Median	1.9939	1.7488	NaN	1	0	Median	0.84987	1.0409	NaN	1	1	Median	0.99827	0.91011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114780000	64373000	50409000	31311000	14259000	17051000	31700000	21052000	10649000	51771000	29062000	22709000	0	0	0	48014	3736	45206	289380;289381;289382;289383;289384	388279;388280;388281;388282;388283;388284	388280			6	
SSSTALTTNVTEQTEK	1	Unmodified	1695.8163	0.81628814	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.751	31.149	2	3.9958E-40	28001	160511_QHF_FH_JSI12i_1	243.88	194.53			1.0797	1.0936	13.447	4	0	Median	1.1681	0.93876	NaN	1	0	Median	0.99806	1.187	NaN	1	0	Median	1.2769	1.2488	NaN	1	0	Median	0.97359	1.0076	NaN	1	0	Median	245010000	117380000	127630000	40518000	18388000	22130000	74927000	36720000	38207000	56625000	26958000	29667000	72943000	35317000	37626000	48015	3819	45207	289385;289386;289387;289388	388285;388286;388287;388288;388289;388290	388286			6	
SSSTFSGIK	1	Unmodified	912.45526	0.45526144	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	20.5	19.823	2	0.00091672	16326	160511_QHF_FH_JSI12i_2	71.692	51.067			1.0347	0.99198	13.639	7	1	Median	1.3189	1.0855	12.738	2	1	Median	0.74402	0.89443	1.3127	2	0	Median	1.0136	0.99211	0.50298	2	0	Median	1.1561	1.28	NaN	1	0	Median	395840000	191070000	204780000	97182000	43860000	53322000	87919000	53117000	34802000	136430000	54549000	81877000	74314000	39539000	34775000	48016	3521	45208	289389;289390;289391;289392;289393;289394;289395	388291;388292;388293;388294;388295;388296;388297;388298	388291			8	
SSSTFSGIKELAR	1	Acetyl (K)	1423.7307	0.73070802	3521	Q8N3U4	STAG2	Cohesin subunit SA-2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.788	63.057	2	0.0011569	33677	160513_QHF_FH_JSI11Kac_5	85.288	40.979			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1963400	1963400	0	0	0	0	0	0	0	1963400	1963400	0	0	0	0	48017	3521	45209	289396	388299	388299	2880		1	
SSSVEQK	1	Acetyl (Protein N-term)	805.38176	0.38176214	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	no	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	7.4751	7.2404	1	0.0011211	5098	160511_QHF_FH_JSI12i_1	102.71	98.86			5.2551	5.0718	203.73	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2745	1.2009	NaN	1	0	Median	21.667	21.42	NaN	1	1	Median	66107000	20852000	45255000	0	0	0	0	0	0	50906000	20251000	30655000	15202000	601140	14601000	48018	3426	45210	289397;289398	388300;388301	388301			2	
SSSVEQKK	2	Acetyl (Protein N-term)	933.47673	0.47672516	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	6.0526	5.7065	2	0.0080749	3728	160511_QHF_FH_JSI12i_1	44.349	24.872			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48019	3426	45211	289399	388302	388302			1	
SSSVGSSSSYPISPAVSR	0	Unmodified	1753.8483	0.84825697	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.175	40.961	2	0.00054852	36282	160511_QHF_FH_JSI9i_1	63.181	50.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48020	2636	45212	289400	388303	388303			1	
SSSYSSYSSR	0	Unmodified	1109.4625	0.46253166	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	no	0	0	0	0			By MS/MS	By MS/MS	6	5.66		2					1					2	1	11.04	8.2159	2	0.011428	7004	160511_QHF_FH_JSI12i_2	46.462	38.121			1.0015	0.99065	18.321	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93748	0.93598	8.0276	2	0	Median	1.1962	1.2656	NaN	1	0	Median	40424000	22718000	17706000	0	0	0	0	0	0	27256000	16147000	11109000	13167000	6570900	6596600	48021	3341	45213	289401;289402;289403	388304;388305	388304			2	
SSTAAQEVK	1	Unmodified	919.46108	0.4610751	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.68	6	1			3	3				2	4	4	3	6.0589	2.5394	2	2.9445E-11	3339	160511_QHF_FH_JSI11i_1	158.76	127.47			0.90465	0.96595	96.184	13	0	Median	1.2844	1.053	5.849	2	0	Median	0.78728	0.93974	17.494	4	0	Median	1.0362	0.99236	179.73	4	0	Median	0.71391	0.74786	15.837	3	0	Plateau	3164500000	1509300000	1655200000	756020000	270860000	485160000	907110000	330380000	576720000	1018900000	641280000	377650000	482440000	266760000	215680000	48022	5200	45214	289404;289405;289406;289407;289408;289409;289410;289411;289412;289413;289414;289415;289416	388306;388307;388308;388309;388310;388311;388312;388313;388314;388315;388316;388317;388318;388319;388320;388321;388322;388323;388324;388325	388306			20	
SSTAISSIAADGEFLHELEEK	1	Unmodified	2233.075	0.075022022	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	91.075	90.682	3	2.7077E-71	78601	160511_QHF_FH_JSI12i_3	235.84	217.28			0.98044	0.92793	12.301	7	3	Median	1.0824	0.92621	NaN	1	0	Median	0.75982	0.92793	NaN	1	0	Median	0.98044	1.0046	12.874	3	2	Median	0.84073	0.89223	21.742	2	1	Median	1404800000	723510000	681270000	120500000	55956000	64543000	192420000	96291000	96128000	579320000	289420000	289900000	512540000	281840000	230700000	48023	558	45215	289417;289418;289419;289420;289421;289422;289423	388326;388327;388328;388329;388330;388331;388332;388333;388334;388335;388336;388337;388338;388339	388338			14	
SSTATHPPGPAVQLNK	1	Unmodified	1603.8318	0.83181904	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	1	4	3	27.599	27.073	2;3	8.1179E-06	22718	160511_QHF_FH_JSI12i_3	98.439	87.334			1.1616	1.0315	16.497	8	3	Median	1.2296	1.0315	0.29156	2	2	Median	0.76686	0.91919	NaN	1	0	Median	1.1053	1.0627	22.85	3	0	Median	1.0368	1.0964	25.56	2	1	Median	698100000	350190000	347910000	123260000	58383000	64880000	91424000	53559000	37865000	275050000	140290000	134760000	208360000	97952000	110410000	48024	2561	45216	289424;289425;289426;289427;289428;289429;289430;289431;289432;289433	388340;388341;388342;388343;388344;388345;388346;388347;388348;388349;388350;388351;388352;388353;388354	388353			15	
SSTDFSELEQPR	0	Unmodified	1394.6314	0.6313879	3336	Q86V48	LUZP1	Leucine zipper protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.585	41.957	2	1.8076E-05	38131	160511_QHF_FH_JSI12i_1	91.701	75.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48025	3336	45217	289434	388355	388355			1	
SSTEEEMEIEK	1	Unmodified	1310.5548	0.55477707	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		25.733	25.494	2	0.00047003	22404	160511_QHF_FH_JSI11i_1	79.201	57.456			1.3306	1.4176	48.368	2	2	Median	NaN	NaN	NaN	0	0	Median	0.84568	1.007	NaN	1	1	Median	2.0935	1.9956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75229000	35016000	40213000	0	0	0	36857000	21703000	15154000	38371000	13313000	25059000	0	0	0	48026	2574	45218	289435;289436;289437	388356;388357;388358	388357			3	
SSTETCYSAIPK	1	Unmodified	1342.6075	0.60748134	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	31.748	29.213	2	6.3963E-07	26165	160511_QHF_FH_JSI12i_1	176.65	158.74			0.80946	0.85489	16.181	4	2	Median	NaN	NaN	NaN	0	0	Median	0.8163	0.96897	NaN	1	1	Median	0.78324	0.74309	2.1084	2	0	Median	0.97147	0.99531	NaN	1	1	Median	235210000	117270000	117930000	0	0	0	67996000	31526000	36470000	69614000	40187000	29427000	97596000	45559000	52037000	48027	512	45219	289438;289439;289440;289441	388359;388360;388361;388362;388363	388360			5	
SSTFLSHSISNQANVHQSVISSWLSTDPAK	1	Unmodified	3227.5847	0.58471907	3656	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			79.749	72.612	4	3.213E-67	38727	160513_QHF_FH_JSI9Kac_6	186.71	177.15			0.83551	0.83784	2.1617	2	0	Median	0.95732	0.82513	NaN	1	0	Median	0.72921	0.85074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	306790000	165320000	141470000	111750000	55484000	56271000	195040000	109840000	85199000	0	0	0	0	0	0	48028	3656	45220	289442;289443	388364;388365;388366	388364			3	
SSTGEASENGLEDIDR	0	Unmodified	1678.7282	0.72820141	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	34.623	33.932	2	5.0085E-10	30445	160511_QHF_FH_JSI11i_1	141.38	127.22			0.81895	0.85751	7.9874	3	0	Plateau	1.0787	0.85751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81895	0.7683	NaN	1	0	Median	0.89344	0.89745	NaN	1	0	Median	103670000	50953000	52716000	26208000	12597000	13611000	0	0	0	49616000	25057000	24558000	27845000	13298000	14546000	48029	4352	45221	289444;289445;289446	388367;388368;388369;388370;388371	388368			5	
SSTGPEPPAPTPLLAER	0	Unmodified	1718.8839	0.88391419	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		58.483	57.711	2	1.5821E-10	51283	160511_QHF_FH_JSI9i_1	137.62	108.41			0.43811	0.39469	54.649	2	2	Median	0.69799	0.58087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27499	0.26819	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	826320000	652830000	173490000	356950000	282450000	74506000	0	0	0	469360000	370380000	98979000	0	0	0	48030	5474	45222	289447;289448;289449	388372;388373;388374	388374			3	
SSTINTIMGNK	1	Unmodified	1164.5809	0.58087266	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		37.556	37.556	2	3.4655E-05	32942	160511_QHF_FH_JSI11i_3	98.048	59.756			0.54678	0.52247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54678	0.52247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29815000	17175000	12640000	0	0	0	0	0	0	29815000	17175000	12640000	0	0	0	48031	4621	45223	289450	388375	388375			1	
SSTITVDQMK	1	Unmodified	1108.5434	0.54342452	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.34	5	1	1			3				2	3	3	2	31.852	28.533	2	1.2578E-08	25105	160511_QHF_FH_JSI11i_1	177.36	156.06			0.92466	0.98328	35.509	9	2	Median	1.0826	0.8913	NaN	1	0	Median	0.83038	0.98328	4.7647	3	1	Median	1.0672	1.0507	67.635	3	1	Median	1.0489	1.1143	19.04	2	0	Median	2360500000	1184300000	1176200000	466520000	229890000	236630000	587020000	325750000	261270000	690850000	297820000	393020000	616130000	330860000	285280000	48032	2846	45224	289451;289452;289453;289454;289455;289456;289457;289458;289459;289460	388376;388377;388378;388379;388380;388381;388382;388383;388384;388385	388377			9	
SSTKPAAGGTAPLPPWK	2	Unmodified	1664.8886	0.88860564	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			45.298	43.725	3	0.00043348	36496	160511_QHF_FH_JSI10i_3	67.646	67.646			1.2054	0.99976	27.221	3	3	Median	1.2054	0.99976	NaN	1	1	Median	1.0049	1.1859	35.885	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88667000	46943000	41725000	16684000	8727300	7956700	71983000	38215000	33768000	0	0	0	0	0	0	48033	2723	45225	289461;289462;289463;289464	388386;388387;388388;388389;388390	388387			5	
SSTLTEDGAK	1	Unmodified	1007.4771	0.47711909	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	9.4557	9.0092	2	7.0848E-05	6821	160511_QHF_FH_JSI10i_1	89.047	62.633			1.0217	1.2032	25.749	3	0	Plateau	0.92132	0.764	NaN	1	0	Median	1.0217	1.2032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1582	1.1831	NaN	1	0	Median	202950000	85384000	117570000	45759000	21143000	24616000	89374000	31015000	58359000	0	0	0	67817000	33226000	34590000	48034	167	45226	289465;289466;289467	388391;388392	388392			2	
SSTMQYVILMYMK	1	Unmodified	1593.7605	0.76049328	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	91.2	81.758	2	1.1794E-26	44034	160513_QHF_FH_JSI12Kac_6	192.55	169.63			1.663	1.7541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.663	1.7541	NaN	1	1	Median	38815000	13872000	24942000	0	0	0	0	0	0	0	0	0	38815000	13872000	24942000	48035	5164	45227	289468	388393	388393			1	
SSTPAQLAFMR	0	Unmodified	1207.6019	0.60194245	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	53.973	53.735	2	4.6244E-06	46569	160511_QHF_FH_JSI11i_2	107.69	77.618			1.1579	1.2762	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1579	1.2762	NaN	1	0	Median	71114000	30685000	40429000	0	0	0	0	0	0	0	0	0	71114000	30685000	40429000	48036	1743	45228	289469;289470	388394;388395	388394			1	
SSTPEEVK	1	Unmodified	875.42363	0.42362696	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	5.54	4	7	6	4	6	4	1	1	3	7	8	12	9	8.9275	4.4468	2	0.0001764	3090	160513_QHF_FH_JSI12Kac_2	119.17	95.201			1.0197	1.0033	24.763	35	6	Median	1.1946	0.94775	25.666	7	1	Median	0.95924	1.0673	26.861	8	0	Median	1.0707	1.0033	21.512	11	3	Median	0.97929	0.99761	25.465	9	2	Median	128880000000	64284000000	64600000000	31465000000	14817000000	16648000000	33933000000	19083000000	14850000000	33063000000	16352000000	16710000000	30423000000	14032000000	16391000000	48037	1236	45229	289471;289472;289473;289474;289475;289476;289477;289478;289479;289480;289481;289482;289483;289484;289485;289486;289487;289488;289489;289490;289491;289492;289493;289494;289495;289496;289497;289498;289499;289500;289501;289502;289503;289504;289505;289506	388396;388397;388398;388399;388400;388401;388402;388403;388404;388405;388406;388407;388408;388409;388410;388411;388412;388413;388414;388415;388416;388417;388418;388419;388420;388421;388422;388423;388424;388425;388426;388427;388428;388429;388430;388431;388432	388430			37	
SSTPEEVKK	2	Unmodified	1003.5186	0.51858998	1236	P23528	CFL1	Cofilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	5.99	8	8	8			3	6	6		8	10	10	11	6.504	3.0006	2;3	5.8414E-07	2763	160513_QHF_FH_JSI11Kac_4	144.09	88.413			0.94253	0.97775	14.875	39	0	Median	1.2643	1.0535	8.8471	8	0	Median	0.96385	1.1374	15.224	10	0	Median	0.93933	0.93398	14.582	10	0	Median	0.88532	0.94207	9.4676	11	0	Median	38173000000	18861000000	19313000000	6763300000	2935600000	3827600000	10206000000	5189700000	5016500000	12305000000	6663300000	5641400000	8898900000	4071900000	4827100000	48038	1236	45230	289507;289508;289509;289510;289511;289512;289513;289514;289515;289516;289517;289518;289519;289520;289521;289522;289523;289524;289525;289526;289527;289528;289529;289530;289531;289532;289533;289534;289535;289536;289537;289538;289539;289540;289541;289542;289543;289544;289545	388433;388434;388435;388436;388437;388438;388439;388440;388441;388442;388443;388444;388445;388446;388447;388448;388449;388450;388451;388452;388453;388454;388455;388456;388457;388458;388459;388460;388461;388462;388463;388464;388465;388466;388467;388468;388469;388470;388471;388472;388473;388474;388475;388476;388477;388478;388479;388480;388481;388482;388483;388484;388485;388486;388487;388488;388489;388490;388491;388492;388493;388494;388495	388459			62	
SSTPEEVKK	2	Acetyl (K)	1045.5292	0.52915466	1236	P23528	CFL1	Cofilin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					2	2					2	1	1	17.813	10.64	2	0.0034288	7482	160513_QHF_FH_JSI12Kac_3	97.635	54.766			0.61783	0.69842	51.156	4	0	Median	NaN	NaN	NaN	0	0	Median	0.8736	1.0378	8.6159	2	0	Median	0.39395	0.38441	NaN	1	0	Median	0.46428	0.49954	NaN	1	0	Median	40633000	24740000	15893000	0	0	0	20637000	11287000	9350800	7741300	5536700	2204600	12254000	7916700	4337400	48039	1236	45230	289546;289547;289548;289549	388496;388497;388498	388497	1131		3	
SSTPIEMAVK	1	Unmodified	1061.5427	0.54269624	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	39.8	39.343	2	0.00074128	35801	160511_QHF_FH_JSI12i_1	78.264	58.267			1.062	1.0627	7.8742	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1727	1.1235	NaN	1	1	Median	0.96185	1.0051	NaN	1	1	Median	274990000	136660000	138340000	0	0	0	0	0	0	150240000	74722000	75522000	124750000	61938000	62813000	48040	4951	45231	289550;289551;289552	388499;388500;388501	388501			3	
SSTPLHSPSPIR	0	Unmodified	1277.6728	0.67279921	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		2	8						2	3	3	4	2	25.633	23.457	2;3	7.6315E-06	19227	160511_QHF_FH_JSI12i_3	84.605	78.906			0.85936	0.91347	51.546	11	5	Median	1.2791	1.0947	77.544	3	2	Plateau	0.70024	0.80414	37.728	3	1	Plateau	0.81807	0.77481	48.366	3	2	Median	0.79417	0.82718	14.033	2	0	Median	758230000	433470000	324770000	65584000	36213000	29371000	157110000	84983000	72132000	240040000	135390000	104640000	295500000	176880000	118620000	48041	732	45232	289553;289554;289555;289556;289557;289558;289559;289560;289561;289562;289563;289564	388502;388503;388504;388505;388506;388507;388508;388509;388510;388511;388512;388513;388514	388512			13	
SSTPLPTISSSAENTR	0	Unmodified	1646.8111	0.81114318	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.65	10	2			1	6				4	7	4	4	47.025	42.926	2;3	1.3628E-40	38398	160511_QHF_FH_JSI11i_1	208.95	176.54			0.98388	0.99932	10.532	18	3	Median	1.3784	1.1233	18.468	4	2	Median	0.83777	0.99932	4.7919	6	1	Median	0.99684	0.97472	1.8429	4	0	Median	0.96173	1.0242	5.8786	4	0	Median	2798500000	1354500000	1444000000	856790000	386820000	469970000	583630000	301380000	282250000	652550000	308070000	344480000	705530000	358210000	347320000	48042	1526;1527	45233	289565;289566;289567;289568;289569;289570;289571;289572;289573;289574;289575;289576;289577;289578;289579;289580;289581;289582;289583	388515;388516;388517;388518;388519;388520;388521;388522;388523;388524;388525;388526;388527;388528;388529;388530;388531;388532;388533;388534;388535;388536;388537;388538;388539;388540;388541;388542;388543;388544	388516			29	
SSTPPGESYFGVSSLQLK	1	Unmodified	1882.9313	0.93125832	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	9	3								3	2	4	3	76.176	75.637	2;3	9.5E-07	67211	160511_QHF_FH_JSI9i_1	111.12	94.174			1.0377	0.95655	18.877	11	4	Median	1.0476	0.89608	3.7921	2	0	Median	0.79029	0.92114	12.045	2	1	Median	1.1019	1.0668	16.678	4	2	Median	0.89125	0.92259	29.475	3	1	Median	454730000	239530000	215200000	49560000	27333000	22227000	88764000	50505000	38259000	202640000	97807000	104830000	113770000	63884000	49881000	48043	5474	45234	289584;289585;289586;289587;289588;289589;289590;289591;289592;289593;289594;289595	388545;388546;388547;388548;388549;388550;388551;388552;388553;388554;388555;388556;388557;388558;388559	388553			15	
SSTPTTIFPIR	0	Unmodified	1218.6608	0.66083754	3350	Q86W42	THOC6	THO complex subunit 6 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								2			1	62.33	61.255	2	0.00013397	52576	160511_QHF_FH_JSI12i_2	84.213	72.365			0.80643	0.87284	36.916	3	2	Median	1.0313	0.88384	52.197	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80643	0.87284	NaN	1	0	Median	84176000	44180000	39997000	51587000	24920000	26667000	0	0	0	0	0	0	32590000	19260000	13330000	48044	3350	45235	289596;289597;289598	388560;388561;388562	388560			3	
SSTQEEIK	1	Unmodified	920.44509	0.44509068	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	7.4778	4.1748	2	0.00040134	4585	160511_QHF_FH_JSI10i_1	109.48	30.01			1.1326	1.1817	22.366	7	0	Median	1.4376	1.1706	NaN	1	0	Median	0.74396	0.89438	39.398	2	0	Median	1.2386	1.2071	13.685	2	0	Median	1.1233	1.2107	3.3321	2	0	Median	1123500000	599260000	524250000	281870000	138340000	143530000	286420000	165290000	121130000	254970000	138120000	116850000	300250000	157510000	142740000	48045	5500	45236	289599;289600;289601;289602;289603;289604;289605	388563;388564;388565;388566;388567;388568;388569;388570;388571;388572;388573	388568			11	
SSTQEEIKK	2	Unmodified	1048.5401	0.5400537	5500	Q9Y281	CFL2	Cofilin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	2	3	2	5.828	5.4626	2;3	3.8631E-06	3375	160511_QHF_FH_JSI11i_2	123.35	80.109			0.88781	0.85526	20.651	8	0	Median	1.0665	0.92171	12.328	2	0	Median	0.50451	0.62356	NaN	1	0	Median	0.93815	0.93759	21.865	3	0	Plateau	0.76635	0.85526	1.1304	2	0	Median	779280000	417440000	361840000	139220000	70708000	68510000	77859000	53025000	24835000	371890000	188610000	183280000	190320000	105100000	85220000	48046	5500	45237	289606;289607;289608;289609;289610;289611;289612;289613;289614	388574;388575;388576;388577;388578;388579;388580;388581;388582;388583	388581			10	
SSTQMTWGALFR	0	Unmodified	1383.6605	0.66051996	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6	5.79		1	2						1	2	2			79.21	76.406	2	2.9131E-39	40361	160513_QHF_FH_JSI10Kac_6	189.58	166.16			0.7977	0.9526	41.631	3	1	Plateau	2.3433	1.9329	NaN	1	1	Median	0.79786	0.94018	1.8563	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217870000	107340000	110530000	28630000	7879000	20751000	189240000	99461000	89780000	0	0	0	0	0	0	48047	4831	45238	289615;289616;289617;289618	388584;388585;388586;388587	388587			4	
SSTSPNLQK	1	Acetyl (Protein N-term)	1002.4982	0.49818889	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		23.356	15.952	2	0.010476	7313	160513_QHF_FH_JSI11Kac_1	41.429	30.36			0.99433	0.964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99433	0.964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7069600	3536200	3533400	0	0	0	0	0	0	7069600	3536200	3533400	0	0	0	48048	507	45239	289619	388588	388588			1	
SSTSSSVGTDVTEGPAHPAPHTR	0	Unmodified	2277.0622	0.062165925	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				22.222	21.264	4	5.8802E-07	18152	160511_QHF_FH_JSI9i_2	50.202	45.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8150800	0	8150800	8150800	0	8150800	0	0	0	0	0	0	0	0	0	48049	3643	45240	289620	388589	388589			1	
SSTTSMTSVPK	1	Unmodified	1124.5383	0.53833914	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.49	18.986	2	1.2092E-09	16196	160511_QHF_FH_JSI10i_1	135.55	81.581			0.93674	1.0327	4.6234	4	0	Linear	1.1351	0.92512	NaN	1	0	Median	0.86623	1.0321	NaN	1	0	Median	0.97762	0.96642	NaN	1	0	Median	0.89756	0.95295	NaN	1	0	Median	1834300000	995840000	838460000	383610000	196430000	187190000	576280000	351660000	224620000	447180000	250570000	196610000	427230000	197190000	230040000	48050	2370	45241	289621;289622;289623;289624	388590;388591;388592;388593;388594;388595;388596	388594			7	
SSTTSMTSVPK	1	Oxidation (M)	1140.5333	0.53325376	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.69	6				3	2				1	4	3	3	11.708	6.9683	2	9.4808E-15	4141	160513_QHF_FH_JSI11Kac_2	152.97	114.01			0.9948	1.0436	19.147	8	3	Median	1.0703	0.85701	NaN	1	1	Median	1.2423	1.4712	18.403	3	1	Plateau	1.1177	1.0901	6.5859	2	0	Median	0.83784	0.86627	14.337	2	1	Median	186290000	95003000	91286000	39848000	21771000	18077000	66219000	30289000	35930000	21978000	10959000	11020000	58244000	31984000	26260000	48051	2370	45241	289625;289626;289627;289628;289629;289630;289631;289632;289633;289634;289635	388597;388598;388599;388600;388601;388602;388603;388604;388605;388606	388599		1930	10	
SSTTSTWELLDQR	0	Unmodified	1522.7264	0.72635092	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	61.853	60.539	2	2.6378E-07	52637	160511_QHF_FH_JSI11i_2	98.156	81.779			0.93684	1.0201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93684	1.0201	NaN	1	0	Median	25282000	13561000	11721000	0	0	0	0	0	0	0	0	0	25282000	13561000	11721000	48052	4819	45242	289636;289637;289638	388607;388608;388609	388608			3	
SSTTVSSFANSK	1	Unmodified	1214.5779	0.57789577	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10	5.66		1					2			1	1	1		30.557	21.577	2	3.498E-05	13757	160513_QHF_FH_JSI11Kac_4	110.14	81.737			0.86601	0.87013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86601	0.87013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5034100	2654200	2379900	0	0	0	0	0	0	5034100	2654200	2379900	0	0	0	48053	2457	45243	289639;289640;289641	388610;388611;388612;388613	388612			4	
SSTTVSSFANSKPGSAK	2	Unmodified	1654.8162	0.81622856	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							2		1		23.476	22.816	3	4.8686E-08	19378	160511_QHF_FH_JSI11i_3	125.52	113.91			0.91054	0.78653	84.374	2	2	Median	1.7537	1.4283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47275	0.43312	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111230000	58612000	52620000	39562000	10946000	28616000	0	0	0	71669000	47666000	24003000	0	0	0	48054	2457	45244	289642;289643;289644	388614;388615;388616	388614			3	
SSTTVSSFANSKPGSAK	2	Acetyl (K)	1696.8268	0.82679325	2457	Q13620	CUL4B	Cullin-4B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.661					1	4	3				3	2	3	47.342	37.779	2;3	1.7159E-10	20905	160513_QHF_FH_JSI12Kac_3	123.64	101.11			0.82325	0.85974	20.502	7	0	Median	NaN	NaN	NaN	0	0	Median	0.91696	1.0863	16.203	2	0	Median	0.74839	0.70975	17.501	2	0	Median	0.82535	0.87224	7.1291	3	0	Plateau	42603000	24586000	18017000	0	0	0	10412000	5405800	5006600	6722000	4089100	2633000	25469000	15091000	10378000	48055	2457	45244	289645;289646;289647;289648;289649;289650;289651;289652	388617;388618;388619;388620;388621;388622;388623;388624;388625;388626;388627;388628;388629;388630	388624	2488		14	
SSTVATLQGTPDHGDPR	0	Unmodified	1737.8282	0.82819023	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								2	4	4	2	25.205	24.484	2;3	6.1302E-07	20375	160511_QHF_FH_JSI11i_2	89.301	71.865			0.94624	1.25	19.205	8	3	Linear	0.85872	0.75246	1.1036	2	2	Median	0.80003	0.97055	24.424	2	1	Median	1.1356	1.1215	5.7893	2	0	Median	0.97585	1.0508	10.732	2	0	Median	467490000	253210000	214280000	75057000	45544000	29513000	102920000	56685000	46239000	158260000	77870000	80388000	131250000	73111000	58140000	48056	3411	45245	289653;289654;289655;289656;289657;289658;289659;289660;289661;289662;289663;289664	388631;388632;388633;388634;388635;388636;388637;388638;388639;388640;388641;388642	388640			12	
SSTVGLVTLNDMK	1	Unmodified	1363.7017	0.70171607	2529	Q14320;Q9Y247	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.26	2	4					4	1		3	3	3	2	59.98	55.271	2	2.626E-15	53074	160511_QHF_FH_JSI12i_2	160.18	148.47			0.91125	0.9506	25.863	10	2	Median	1.1839	1.0458	3.7667	2	1	Median	1.0623	1.2783	39.166	3	0	Plateau	0.92937	0.94139	25.128	3	1	Median	0.83629	0.91477	12.03	2	0	Median	1219400000	598690000	620750000	594140000	261600000	332540000	196030000	90180000	105860000	329350000	191970000	137380000	99922000	54945000	44977000	48057	2529	45246	289665;289666;289667;289668;289669;289670;289671;289672;289673;289674;289675	388643;388644;388645;388646;388647;388648;388649;388650;388651;388652;388653;388654;388655;388656;388657;388658	388644			16	
SSTVGLVTLNDMK	1	Oxidation (M)	1379.6966	0.6966307	2529	Q14320;Q9Y247	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	yes	no	0	0	1	0		By MS/MS			14	0							2				2			58.241	47.582	2	0.00072385	26250	160513_QHF_FH_JSI10Kac_4	90.108	75.901			0.99975	1.1434	24.774	2	2	Median	NaN	NaN	NaN	0	0	Median	0.99975	1.1434	24.774	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4197500	2157300	2040200	0	0	0	4197500	2157300	2040200	0	0	0	0	0	0	48058	2529	45246	289676;289677	388659;388660	388659		1998	2	
SSTVPIPTVNQYLYFLFAPTLIYR	0	Unmodified	2802.4996	0.49963944	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	101.24	92.943	2;3	6.364E-196	56249	160513_QHF_FH_JSI10Kac_6	294.39	269.83			1.01	1.1115	9.7982	7	0	Median	1.4454	1.2213	3.4582	2	0	Median	0.91006	1.0684	5.5942	2	0	Median	1.0888	1.0414	11.111	2	0	Median	0.91735	0.9857	NaN	1	0	Median	4867500000	2199100000	2668300000	1561400000	612490000	948880000	1936600000	967200000	969410000	1276600000	571440000	705210000	92835000	48006000	44829000	48059	1439	45247	289678;289679;289680;289681;289682;289683;289684	388661;388662;388663;388664;388665;388666;388667;388668;388669;388670	388670			9	
SSTVTEAPIAVVTSR	0	Unmodified	1516.8097	0.80968662	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			56.545	55.772	2	0.00036629	50306	160511_QHF_FH_JSI10i_1	95.417	76.102			0.49215	0.47672	18.58	2	2	Median	0.65325	0.54365	NaN	1	1	Median	0.37078	0.41803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70637000	45659000	24978000	36265000	22074000	14191000	34372000	23585000	10787000	0	0	0	0	0	0	48060	3716	45248	289685;289686	388671;388672	388671			2	
SSTYEVR	0	Unmodified	840.39775	0.39774656	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			2	2	3	2	9.7417	8.5491	2	1.1472E-07	5081	160513_QHF_FH_JSI11Kac_4	143	94.831			0.89553	0.97265	38.852	9	1	Median	0.58969	0.4975	60.11	2	0	Median	0.78693	0.94756	9.424	2	1	Median	1.0983	1.0891	8.36	3	0	Median	0.95681	1.0455	10.213	2	0	Median	3827400000	2040700000	1786600000	382720000	197300000	185420000	1015300000	584400000	430860000	1047900000	538050000	509880000	1381500000	721010000	660490000	48061	828	45249	289687;289688;289689;289690;289691;289692;289693;289694;289695	388673;388674;388675;388676;388677;388678;388679;388680;388681;388682;388683;388684;388685	388679			13	
SSVAAPEK	1	Unmodified	787.40758	0.40758296	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	8.2435	7.9752	2	0.0027508	5703	160511_QHF_FH_JSI10i_1	77.732	36.23			0.61062	0.677	26.686	4	2	Median	NaN	NaN	NaN	0	0	Median	0.54791	0.63224	NaN	1	0	Median	0.76066	0.72492	NaN	1	1	Median	0.51283	0.54712	39.865	2	1	Median	413020000	271520000	141500000	0	0	0	120710000	86183000	34531000	107970000	66849000	41118000	184340000	118490000	65851000	48062	4290	45250	289696;289697;289698;289699;289700	388686;388687;388688;388689	388688			4	
SSVASTTTVPAK	1	Unmodified	1147.6085	0.60846762	5860				yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			4							2	1		1	10.343	9.8538	3	0.02382	7423	160511_QHF_FH_JSI9i_3	21.301	0.43048	+		1.0365	0.84352	130.83	4	0	Median	1.0365	0.84352	0	2	0	Median	0.061615	0.07007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1593	1.1732	NaN	1	0	Median	964770000	498800000	465970000	162290000	79922000	82367000	167100000	158510000	8592400	0	0	0	635380000	260370000	375010000	48063	5860	45251	289701;289702;289703;289704	388690;388691	388690			2	
SSVATTSGK	1	Unmodified	836.42396	0.42396131	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	5.44	4		1		4	4				3	4	3	3	5.1801	-0.067602	2	1.2067E-06	2501	160511_QHF_FH_JSI11i_1	133.86	71.148			0.95398	0.9631	59.942	12	1	Median	1.6365	0.83591	32.647	2	0	Median	0.96707	1.1357	100.37	4	1	Median	0.96376	0.94005	20.642	3	0	Median	0.918	0.98671	6.793	3	0	Median	2953500000	1591000000	1362600000	420880000	202110000	218770000	818990000	475860000	343130000	816750000	416200000	400550000	896890000	496790000	400100000	48064	2505	45252	289705;289706;289707;289708;289709;289710;289711;289712;289713;289714;289715;289716;289717	388692;388693;388694;388695;388696;388697;388698;388699;388700;388701;388702;388703;388704;388705;388706;388707;388708;388709	388693			18	
SSVAVLTQESFAEHR	0	Acetyl (Protein N-term)	1701.8322	0.83221298	2147	Q00341	HDLBP	Vigilin	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.22	5	4	2				2	1		4	3	4	3	70.907	67.658	2	1.0338E-58	58615	160511_QHF_FH_JSI12i_2	272.32	253.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48065	2147	45253	289718;289719;289720;289721;289722;289723;289724;289725;289726;289727;289728;289729;289730;289731	388710;388711;388712;388713;388714;388715;388716;388717;388718;388719;388720;388721;388722;388723;388724;388725;388726;388727;388728;388729;388730;388731;388732;388733	388714			24	
SSVDLEESSTK	1	Unmodified	1180.5459	0.54592694	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	18.686	18.113	2	0.00099981	15622	160511_QHF_FH_JSI12i_1	71.524	42.797			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48066	3653	45254	289732;289733;289734	388734;388735;388736	388735			3	
SSVETTPSVIQHVGQPPATPAK	1	Unmodified	2230.1594	0.15936077	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.807	49.411	3	0.00012544	42271	160511_QHF_FH_JSI12i_2	50.425	40.637			0.43583	0.48611	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43583	0.48611	NaN	1	1	Median	11678000	9371700	2306600	0	0	0	0	0	0	0	0	0	11678000	9371700	2306600	48067	3164	45255	289735	388737	388737			1	
SSVFELQVADTPDGEK	1	Unmodified	1720.8156	0.81555986	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		65.933	65.601	2	2.0374E-07	59655	160511_QHF_FH_JSI11i_1	96.464	73.547			0.90464	1.0049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90464	1.0049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19031000	10312000	8718600	0	0	0	19031000	10312000	8718600	0	0	0	0	0	0	48068	401	45256	289736;289737	388738;388739	388738			2	
SSVGAPVEVTHNFQVDFVWK	1	Unmodified	2245.1168	0.11676768	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	90.863	90.281	3	5.0476E-06	79367	160511_QHF_FH_JSI11i_2	77.871	72.871			1.1436	1.2717	14.717	3	0	Plateau	1.1436	0.96078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2564	1.2717	NaN	1	0	Median	1.1297	1.1946	NaN	1	0	Median	105760000	49373000	56388000	22875000	11718000	11157000	0	0	0	59353000	25596000	33757000	23532000	12058000	11474000	48069	3904	45257	289738;289739;289740;289741	388740;388741;388742;388743;388744;388745	388742			6	
SSVGETVYGGSDELSDDITQQQLLPGVK	1	Unmodified	2921.4142	0.41419107	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		88.928	88.697	3	2.1254E-05	80520	160511_QHF_FH_JSI10i_1	53.475	46.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48070	116	45258	289742;289743	388746;388747	388747			2	
SSVGHKNEPK	2	Acetyl (K)	1123.5622	0.56218613	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.493							5	7		2	4	3	3	7.5382	-1.5429	2;3	0.00018634	2437	160513_QHF_FH_JSI10Kac_5	98.943	76.203			0.98901	1.0621	8.7115	12	0	Median	1.2031	1.012	0.566	2	0	Median	0.86938	1.0386	8.8412	4	0	Median	1.1749	1.1592	5.2904	3	0	Plateau	1.0003	1.1003	3.9667	3	0	Plateau	209110000	106350000	102760000	34602000	16122000	18480000	71000000	40098000	30902000	63013000	29707000	33306000	40493000	20419000	20074000	48071	2204	45259	289744;289745;289746;289747;289748;289749;289750;289751;289752;289753;289754;289755	388748;388749;388750;388751;388752;388753;388754;388755;388756;388757;388758;388759;388760;388761	388761	2328		14	
SSVGPSKPVSQPR	1	Acetyl (K)	1366.7205	0.72047768	5703	Q9Y657	SPIN1	Spindlin-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	1	3	34.39	25.536	2	0.00071488	15255	160513_QHF_FH_JSI11Kac_3	89.805	70.562			0.78688	0.8809	5.9573	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71341	0.84456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86791	0.9188	NaN	1	0	Median	27233000	17954000	9278800	0	0	0	10757000	6593000	4164200	3916400	3916400	0	12559000	7444400	5114600	48072	5703	45260	289756;289757;289758;289759;289760;289761	388762;388763;388764;388765;388766;388767;388768;388769	388763	3533		8	
SSVIGASSQFTR	0	Unmodified	1238.6255	0.62551466	2396	Q13371	PDCL	Phosducin-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	36.805	36.21	2	0.00013285	30789	160511_QHF_FH_JSI12i_3	83	65.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48073	2396	45261	289762;289763	388770;388771	388771			2	
SSVINAMLWDK	1	Unmodified	1262.6329	0.63290823	3416	Q8IWA4	MFN1	Mitofusin-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	74.75	74.46	2	4.0804E-06	64657	160511_QHF_FH_JSI12i_3	108.7	83.311			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48074	3416	45262	289764	388772	388772			1	
SSVLENFVGR	0	Unmodified	1106.572	0.57202253	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	59.529	58.636	2	0.0035049	48188	160511_QHF_FH_JSI9i_3	69.375	56.585			1.3561	1.253	76.813	2	1	Median	2.6124	2.1569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70399	0.72788	NaN	1	0	Median	214850000	103760000	111090000	69811000	21595000	48216000	0	0	0	0	0	0	145040000	82168000	62875000	48075	1711	45263	289765;289766	388773;388774	388773			1	
SSVLESLVGR	0	Unmodified	1045.5768	0.57677356	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.884	62.884	2	1.2022E-05	55941	160511_QHF_FH_JSI11i_3	122.33	87.034			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48076	133	45264	289767	388775	388775			1	
SSVLIAQQTDTSDPEK	1	Unmodified	1717.837	0.83702358	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	5.74	5				3	3				1	3	2	5	41.984	36.652	2	7.0056E-40	32575	160511_QHF_FH_JSI10i_1	198.32	175.08			0.89167	0.96681	10.321	9	1	Median	1.2763	1.0591	NaN	1	0	Median	0.80747	0.94634	7.6882	3	0	Median	0.87781	0.86018	0.96124	2	0	Median	1.0187	1.087	8.4617	3	1	Median	1459000000	735310000	723720000	325590000	163550000	162040000	405930000	217330000	188600000	371520000	173440000	198080000	355990000	180990000	175000000	48077	1578	45265	289768;289769;289770;289771;289772;289773;289774;289775;289776;289777;289778	388776;388777;388778;388779;388780;388781;388782;388783;388784;388785;388786;388787;388788;388789;388790;388791;388792;388793;388794	388783			19	
SSVLQVSVLQSTK	1	Unmodified	1374.7718	0.77184455	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	0			By MS/MS		14.5	0.5							1	1				2		71.399	60.599	2	0.0021912	32453	160513_QHF_FH_JSI11Kac_5	77.062	60.53			0.65905	0.64805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65905	0.64805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4826300	3170700	1655600	0	0	0	0	0	0	4826300	3170700	1655600	0	0	0	48078	3064	45266	289779;289780	388795;388796	388796			2	
SSVNCPFSSQDMK	1	Unmodified	1485.6228	0.62281383	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1				1	3	3	39.021	36.379	2	8.3403E-23	32792	160511_QHF_FH_JSI12i_1	148.18	85.72			0.84758	0.90925	18.672	4	2	Median	NaN	NaN	NaN	0	0	Median	0.78709	0.9295	NaN	1	0	Median	0.8321	0.84433	7.3602	2	1	Median	1.1842	1.2399	NaN	1	1	Median	920030000	517150000	402870000	0	0	0	257980000	175370000	82611000	354370000	187460000	166910000	307670000	154320000	153350000	48079	2265	45267	289781;289782;289783;289784;289785;289786;289787	388797;388798;388799;388800;388801;388802;388803;388804;388805	388800			9	
SSVNCPFSSQDMK	1	Oxidation (M)	1501.6177	0.61772845	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	31.626	30.746	2	0.00045734	22382	160511_QHF_FH_JSI12i_1	73.666	58.4			3.6199	3.3363	99.798	2	0	Median	1.979	1.6474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.6215	6.7568	NaN	1	0	Median	88920000	23321000	65599000	22807000	10090000	12717000	0	0	0	0	0	0	66113000	13231000	52882000	48080	2265	45267	289788;289789;289790	388806;388807;388808;388809;388810	388807		1872	5	
SSVNSHMTQSTDSR	0	Unmodified	1535.6634	0.66343309	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	7.8251	7.6119	2	8.0059E-32	5558	160511_QHF_FH_JSI10i_2	170.04	136.82			1.0512	0.95239	24.919	4	2	Median	1.0182	0.88329	NaN	1	1	Median	0.63589	0.7886	NaN	1	1	Median	1.0853	1.0269	NaN	1	0	Median	1.3789	1.4012	NaN	1	0	Median	90796000	44754000	46042000	14682000	4875800	9806700	21757000	14627000	7130600	25521000	10005000	15515000	28835000	15246000	13589000	48081	5113	45268	289791;289792;289793;289794;289795;289796	388811;388812;388813;388814;388815;388816	388815			6	
SSVPASDDAYPEIEK	1	Unmodified	1606.7362	0.7362469	748	O95997;Q9NZH5	PTTG1;PTTG2	Securin;Securin-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.023	42.523	2	9.9885E-05	38577	160511_QHF_FH_JSI12i_1	104.87	90.631			0.63808	0.64772	22.327	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57628	0.55313	NaN	1	1	Median	0.70651	0.7585	NaN	1	0	Median	71941000	40852000	31089000	0	0	0	0	0	0	31995000	19705000	12289000	39946000	21146000	18800000	48082	748	45269	289797;289798;289799;289800	388817;388818;388819;388820;388821	388819			5	
SSVPGVR	0	Unmodified	700.38679	0.38678794	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.25	6.26		2					1	1		1		1	2	14.535	9.9989	2	0.0072249	6378	160513_QHF_FH_JSI9Kac_5	89.903	0			1.0354	1.0572	15.512	4	0	Median	1.2541	1.0669	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0442	1.0475	NaN	1	0	Median	0.8383	0.93292	23.745	2	0	Median	393170000	220170000	173000000	6598300	2943000	3655300	0	0	0	245000000	129110000	115890000	141570000	88117000	53455000	48083	913	45270	289801;289802;289803;289804	388822;388823;388824;388825	388823			4	
SSVPIPIPADTR	0	Unmodified	1251.6823	0.68230126	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.664	59.56	2	0.010138	52898	160511_QHF_FH_JSI9i_1	57.348	44.229			0.90752	0.75534	NaN	1	1	Median	0.90752	0.75534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23753000	11424000	12329000	23753000	11424000	12329000	0	0	0	0	0	0	0	0	0	48084	3306	45271	289805	388826	388826			1	
SSVPIPIPADTRDNEVNHALEQQEAK	1	Unmodified	2857.4206	0.42061385	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	65.091	64.801	3;4	5.7468E-05	57603	160511_QHF_FH_JSI11i_3	53.747	41.441			1.0272	1.0271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.0271	NaN	1	1	Median	54325000	24712000	29613000	0	0	0	0	0	0	0	0	0	54325000	24712000	29613000	48085	3306	45272	289806;289807	388827;388828	388827			2	
SSVPLYLIYPSVENVR	0	Unmodified	1834.9829	0.98289996	5018	Q9NUW8	TDP1	Tyrosyl-DNA phosphodiesterase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.908	94.574	2	0.020231	83029	160511_QHF_FH_JSI11i_2	64.878	51.678			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48086	5018	45273	289808	388829	388829			1	
SSVQGASSR	0	Unmodified	877.42536	0.42535829	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	1.3427	1.246	2	0.0017268	576	160511_QHF_FH_JSI11i_1	69.825	55.049			0.92679	0.90638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92679	0.90638	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56588000	31471000	25118000	0	0	0	0	0	0	56588000	31471000	25118000	0	0	0	48087	732	45274	289809;289810;289811;289812	388830;388831;388832;388833	388831			4	
SSVSDAPVHITASGEPVPISEESEELDQK	1	Unmodified	3036.4411	0.4411341	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	68.895	68.463	3	1.3146E-15	62314	160511_QHF_FH_JSI11i_1	88.278	81.915			0.6966	0.71315	25.934	3	2	Median	NaN	NaN	NaN	0	0	Median	0.47432	0.55989	NaN	1	1	Median	0.95649	0.94016	NaN	1	0	Median	0.6966	0.71315	NaN	1	1	Median	123710000	84341000	39368000	0	0	0	46085000	37126000	8958900	44374000	22992000	21382000	33251000	24223000	9027100	48088	183	45275	289813;289814;289815	388834;388835;388836;388837	388835			4	
SSVSGIVATVFGATGFLGR	0	Unmodified	1824.9734	0.9733979	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			97.199	91.478	2;3	3.1111E-42	53159	160513_QHF_FH_JSI10Kac_6	223.72	195.39			0.74145	0.87539	4.0986	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74145	0.87539	4.0986	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214230000	134230000	80000000	0	0	0	214230000	134230000	80000000	0	0	0	0	0	0	48089	2767	45276	289816;289817	388838;388839	388838			2	
SSVSHSVLSEMQVIEQETPVSAK	1	Unmodified	2471.2214	0.22136868	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	83.367	82.955	3	2.3203E-25	74102	160511_QHF_FH_JSI11i_3	168.81	161.7			1.5109	1.586	43.231	5	0	Median	1.9001	1.586	NaN	1	0	Median	1.4122	1.7096	NaN	1	0	Median	1.7077	1.7033	85.806	2	0	Median	1.5109	1.5216	NaN	1	0	Median	372750000	162310000	210440000	62898000	22300000	40599000	73351000	40317000	33035000	160930000	64167000	96766000	75565000	35529000	40036000	48090	3555	45277	289818;289819;289820;289821;289822;289823	388840;388841;388842;388843;388844;388845;388846;388847;388848;388849;388850	388842			11	
SSVVPSVILKPENIK	2	Unmodified	1608.9451	0.94505789	2401	Q13415	ORC1	Origin recognition complex subunit 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	63.938	63.793	3	0.00021201	55137	160511_QHF_FH_JSI12i_3	87.566	82.675			0.75101	0.73512	15.423	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69408	0.65917	NaN	1	1	Median	0.81262	0.81982	NaN	1	1	Median	116730000	60024000	56710000	0	0	0	0	0	0	37084000	18086000	18998000	79650000	41937000	37712000	48091	2401	45278	289824;289825	388851;388852	388852			2	
SSVVTAVK	1	Unmodified	789.45962	0.45961853	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	5.99	3		2			1	3			2	2	2	3	19.396	14.403	2	0.00086729	12803	160511_QHF_FH_JSI12i_1	89.752	50.934			0.92259	0.98599	45.276	7	2	Median	0.72933	0.59024	72.564	2	1	Median	0.73777	0.85864	NaN	1	0	Median	1.1367	1.1224	3.9799	2	0	Median	0.66232	0.70347	50.144	2	1	Median	1083200000	736730000	346480000	518250000	361390000	156860000	10655000	5582500	5073000	41131000	20704000	20427000	513170000	349050000	164120000	48092	3343	45279	289826;289827;289828;289829;289830;289831;289832;289833;289834	388853;388854;388855;388856;388857;388858;388859;388860;388861;388862;388863	388855			11	
SSVWSAFK	1	Unmodified	910.45487	0.45486751	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		50.385	50.385	2	0.0027636	44580	160511_QHF_FH_JSI11i_3	85.064	57.927			1.0022	0.95767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0022	0.95767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55731000	28419000	27312000	0	0	0	0	0	0	55731000	28419000	27312000	0	0	0	48093	486	45280	289835	388864	388864			1	
SSWASEEEANPAATK	1	Unmodified	1576.7005	0.7005301	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			31.772	31.437	2	5.9445E-05	28012	160511_QHF_FH_JSI10i_1	76.655	65.336			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48094	1549	45281	289836	388865	388865			1	
SSWLEEDDDPVVAR	0	Unmodified	1616.7318	0.73183023	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		61.063	60.426	2	1.3404E-10	54666	160511_QHF_FH_JSI10i_1	154.15	129.31			2.3992	2.3785	33.058	3	0	Median	1.965	1.6311	NaN	1	0	Median	2.7267	3.1523	NaN	1	0	Median	2.3992	2.3785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	267890000	87029000	180860000	57317000	20291000	37026000	98884000	35347000	63537000	111690000	31392000	80299000	0	0	0	48095	294	45282	289837;289838;289839	388866;388867;388868;388869	388868			3	
SSYADMLHDK	1	Unmodified	1165.5074	0.50737336	5037	Q9NVM4	PRMT7	Protein arginine N-methyltransferase 7	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	33.116	31.934	2	0.00076816	27779	160511_QHF_FH_JSI9i_2	77.662	54.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48096	5037	45283	289840;289841	388870;388871	388871			2	
SSYDVFQLEFNDGAYNIK	1	Unmodified	2108.9691	0.96910039	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.48	0.663	13	6	2							5	5	6	5	94.404	94.092	2;3	1.1765E-38	85091	160511_QHF_FH_JSI10i_1	245.15	218.05			1.1793	1.0913	25.026	19	18	Median	1.3369	1.1129	10.906	4	4	Median	0.90304	1.0703	38.325	5	5	Median	1.1523	1.0991	19.913	6	5	Median	1.1086	1.147	22.519	4	4	Median	1148200000	525380000	622870000	134440000	58037000	76404000	395650000	176390000	219260000	370310000	174620000	195680000	247850000	116320000	131530000	48097	2751	45284	289842;289843;289844;289845;289846;289847;289848;289849;289850;289851;289852;289853;289854;289855;289856;289857;289858;289859;289860;289861;289862	388872;388873;388874;388875;388876;388877;388878;388879;388880;388881;388882;388883;388884;388885;388886;388887;388888;388889;388890;388891;388892;388893;388894;388895;388896;388897;388898;388899;388900;388901;388902	388888			31	
SSYIAASTAKPPK	2	Unmodified	1319.7085	0.70851601	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	21.878	21.132	2;3	0.00067722	17427	160511_QHF_FH_JSI12i_3	69.92	62.55			0.7771	0.85531	17.546	4	1	Linear	1.0665	0.86373	NaN	1	0	Median	0.93311	1.0741	NaN	1	0	Median	0.8979	0.84698	NaN	1	0	Median	0.6839	0.69945	NaN	1	1	Median	245900000	137310000	108590000	36289000	17412000	18878000	54312000	29482000	24830000	57671000	32408000	25263000	97630000	58005000	39625000	48098	3249	45285	289863;289864;289865;289866;289867	388903;388904;388905;388906;388907	388907			5	
SSYIVSQIAVAYHNIR	0	Unmodified	1819.9581	0.95808219	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	78.458	70.097	3	5.2515E-24	38999	160513_QHF_FH_JSI10Kac_6	150.59	136.17			0.96685	1.1168	17.409	4	1	Linear	1.0313	0.8663	NaN	1	0	Median	0.95516	1.127	NaN	1	0	Median	1.138	1.1066	NaN	1	0	Median	1.2396	1.3207	NaN	1	1	Median	681690000	351870000	329820000	185360000	100800000	84563000	352650000	179580000	173080000	98819000	53085000	45734000	44857000	18414000	26443000	48099	5350	45286	289868;289869;289870;289871;289872	388908;388909;388910;388911;388912;388913;388914	388914			7	
SSYLEYQK	1	Unmodified	1016.4815	0.48147619	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	4	3	1	29.202	25.397	2	0.00071995	22348	160511_QHF_FH_JSI10i_1	110.31	66.193			1.0069	1.0154	19.19	8	1	Median	1.3695	1.1773	NaN	1	0	Median	0.80265	0.94502	22.254	3	1	Median	0.9901	0.97769	22.453	3	0	Plateau	0.87461	0.94311	NaN	1	0	Median	335380000	169690000	165690000	43804000	17190000	26613000	138610000	62542000	76066000	148240000	87239000	60998000	4730800	2722500	2008200	48100	679	45287	289873;289874;289875;289876;289877;289878;289879;289880;289881	388915;388916;388917;388918;388919;388920;388921;388922;388923;388924	388917			10	
SSYPDHK	1	Unmodified	832.37153	0.37153181	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.9219	4.7278	2	0.039268	2497	160511_QHF_FH_JSI11i_2	49.65	32.723			0.73536	0.72391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73536	0.72391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50076000	25677000	24399000	0	0	0	0	0	0	50076000	25677000	24399000	0	0	0	48101	3947	45288	289882	388925	388925			1	
SSYPQNK	1	Unmodified	822.38718	0.38718187	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				5.4433	4.8673	2	0.011479	2705	160511_QHF_FH_JSI9i_1	77.496	46.883			0.62478	0.51665	NaN	1	1	Median	0.62478	0.51665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196850000	100290000	96554000	196850000	100290000	96554000	0	0	0	0	0	0	0	0	0	48102	3657	45289	289883	388926	388926			1	
SSYVLSK	1	Unmodified	782.41742	0.41741937	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		25.706	17.916	2	0.011582	11505	160513_QHF_FH_JSI11Kac_4	80.229	40.126			1.039	1.0132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.039	1.0132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7463700	4290100	3173700	0	0	0	0	0	0	7463700	4290100	3173700	0	0	0	48103	1558	45290	289884	388927	388927			1	
SSYYKSLLSAEEAAK	2	Acetyl (K)	1687.8305	0.83048164	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		77.164	66.529	2	2.5034E-06	35400	160513_QHF_FH_JSI11Kac_5	105.17	90.198			0.29129	0.28672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29129	0.28672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5423700	4266500	1157200	0	0	0	0	0	0	5423700	4266500	1157200	0	0	0	48104	3213	45291	289885	388928;388929	388929	2798		2	
SSYYMIGEQK	1	Unmodified	1204.5434	0.54342452	1495	P40261	NNMT	Nicotinamide N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.98	4	5					5			2	5	4	3	40.973	37.247	2	2.2811E-07	31704	160511_QHF_FH_JSI12i_2	115.71	89.33			0.96586	1.0826	25.504	13	6	Median	1.14	0.94776	26.701	2	0	Median	0.80289	0.94529	28.21	5	4	Median	1.2715	1.2471	17.32	3	1	Plateau	1.0331	1.0826	37.631	3	1	Median	1152000000	544110000	607880000	168120000	77102000	91017000	340820000	184840000	155980000	376650000	168400000	208250000	266400000	113770000	152630000	48105	1495	45292	289886;289887;289888;289889;289890;289891;289892;289893;289894;289895;289896;289897;289898;289899	388930;388931;388932;388933;388934;388935;388936;388937;388938;388939;388940;388941;388942;388943;388944;388945;388946	388931			17	
STAAEVQQVLNR	0	Unmodified	1314.6892	0.68917755	4752	Q9H6T0;Q6NXG1	ESRP2;ESRP1	Epithelial splicing regulatory protein 2;Epithelial splicing regulatory protein 1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	46.291	45.341	2	2.3793E-07	39855	160511_QHF_FH_JSI10i_2	112.36	100.51			0.98831	1.0241	6.555	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97696	0.97769	NaN	1	1	Median	0.9998	1.0727	NaN	1	1	Median	118900000	58158000	60740000	0	0	0	0	0	0	73914000	33070000	40845000	44984000	25089000	19896000	48106	4752	45293	289900;289901;289902;289903	388947;388948;388949;388950	388950			4	
STAALEEDAQILK	1	Unmodified	1387.7195	0.71947463	2503	Q14155;Q15052	ARHGEF7;ARHGEF6	Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6	yes	no	0	0	0	0			By MS/MS		1	0	1											1		57.527	57.109	2	1.0139E-05	51741	160511_QHF_FH_JSI11i_1	133.89	112.92			0.48521	0.46513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48521	0.46513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105730000	73254000	32473000	0	0	0	0	0	0	105730000	73254000	32473000	0	0	0	48107	2503	45294	289904	388951	388951			1	
STACQMLVCYAK	1	Unmodified	1430.6356	0.63562712	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	1	2	53.401	52.525	2	0.00015137	46267	160511_QHF_FH_JSI10i_2	99.973	81.705			1.1512	0.74005	36.548	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.54661	0.66856	NaN	1	1	Median	0.62989	0.62598	NaN	1	1	Median	1.0245	1.0714	37.956	2	2	Median	157990000	74579000	83407000	0	0	0	38875000	19151000	19724000	44850000	24272000	20578000	74261000	31156000	43105000	48108	127	45295	289905;289906;289907;289908	388952;388953;388954;388955	388955			4	
STADALDDENTFK	1	Acetyl (Protein N-term)	1467.6365	0.63653286	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	4.95	4			3						1	2	2	2	56.013	53.599	2	9.9954E-11	48826	160511_QHF_FH_JSI11i_1	91.752	80.539			1.0962	1.0765	96.372	5	2	Median	11.684	9.4523	NaN	1	1	Median	1.5616	1.8427	NaN	1	0	Median	1.0962	1.0765	NaN	1	0	Median	0.96142	0.99658	2.6582	2	1	Median	329690000	131940000	197750000	49211000	3007700	46203000	109590000	46439000	63147000	103850000	56852000	46999000	67041000	25642000	41399000	48109	1695	45296	289909;289910;289911;289912;289913;289914;289915	388956;388957;388958;388959;388960;388961;388962;388963	388956			8	
STADSGGEGLETAPK	1	Unmodified	1418.6525	0.65251728	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.396	18.892	2	1.0466E-09	16354	160511_QHF_FH_JSI12i_1	179.35	155.93			0.92083	0.83757	14.284	4	0	Median	0.96507	0.78076	NaN	1	0	Median	0.70469	0.83869	NaN	1	0	Median	0.87862	0.83646	NaN	1	0	Median	1.0179	1.0803	NaN	1	0	Median	179300000	86980000	92323000	50881000	21943000	28938000	43615000	24310000	19306000	39739000	21457000	18282000	45068000	19269000	25798000	48110	3653	45297	289916;289917;289918;289919	388964;388965;388966;388967	388965			4	
STAEAFQIVLSHLLGDAGSPYLIGLISDR	0	Unmodified	3042.6026	0.60260096	4683	Q9H2V7	SPNS1	Protein spinster homolog 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			100.62	94.904	3;4	1.9156E-71	55906	160513_QHF_FH_JSI10Kac_6	199.59	163.33			0.93255	1.1102	20.52	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93255	1.1102	20.52	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	455910000	267580000	188340000	0	0	0	455910000	267580000	188340000	0	0	0	0	0	0	48111	4683	45298	289920;289921	388968;388969	388968			2	
STAFQLVELGPGR	0	Unmodified	1373.7303	0.73031409	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.25	5.63		3						1		1	3			73.257	72.47	2	1.3449E-05	64433	160511_QHF_FH_JSI10i_2	119.39	107.17			1.2348	1.5015	27.913	3	2	Median	2.4769	2.1727	NaN	1	0	Median	1.116	1.3739	12.56	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84523000	34178000	50345000	18046000	5328900	12717000	66478000	28849000	37629000	0	0	0	0	0	0	48112	3230	45299	289922;289923;289924;289925	388970;388971;388972;388973	388971			4	
STAGDTHLGGEDFDNR	0	Unmodified	1690.7183	0.71830543	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.9	5.48	16	12	9			2	4	5	1	10	11	13	15	29.15	26.073	2;3	0	23381	160511_QHF_FH_JSI12i_1	389	380.26			1.0027	1.0028	8.4217	43	5	Median	1.1594	0.95952	10.182	9	0	Median	0.85274	1.0043	6.3947	10	1	Median	1.0365	0.99928	7.3153	12	2	Median	0.98431	1.0701	6.6794	12	2	Median	31581000000	16140000000	15441000000	5847600000	2508600000	3339000000	7453500000	4142700000	3310800000	11158000000	5983600000	5174000000	7122200000	3505300000	3616900000	48113	985;1827	45300	289926;289927;289928;289929;289930;289931;289932;289933;289934;289935;289936;289937;289938;289939;289940;289941;289942;289943;289944;289945;289946;289947;289948;289949;289950;289951;289952;289953;289954;289955;289956;289957;289958;289959;289960;289961;289962;289963;289964;289965;289966;289967;289968;289969;289970;289971;289972;289973;289974	388974;388975;388976;388977;388978;388979;388980;388981;388982;388983;388984;388985;388986;388987;388988;388989;388990;388991;388992;388993;388994;388995;388996;388997;388998;388999;389000;389001;389002;389003;389004;389005;389006;389007;389008;389009;389010;389011;389012;389013;389014;389015;389016;389017;389018;389019;389020;389021;389022;389023;389024;389025;389026;389027;389028;389029;389030;389031;389032;389033;389034;389035;389036;389037;389038;389039;389040;389041;389042;389043;389044;389045;389046;389047;389048;389049;389050;389051;389052;389053;389054;389055;389056;389057;389058;389059;389060;389061;389062;389063;389064;389065;389066;389067;389068;389069;389070;389071;389072	388998			99	
STAIFFYCDR	0	Unmodified	1278.5703	0.57030797	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.42		2						4	4	2	3	2	3	70.382	62.391	2	1.9539E-12	32466	160513_QHF_FH_JSI12Kac_6	157.96	119.66			1.1135	1.1443	21.727	10	2	Median	1.4459	1.2479	1.5234	2	0	Median	0.91943	1.0607	9.2689	3	1	Plateau	0.90473	0.8661	0.42228	2	0	Median	1.3452	1.4728	3.4374	3	1	Plateau	352930000	182610000	170320000	37874000	15916000	21958000	145410000	85576000	59838000	86780000	46632000	40148000	82860000	34488000	48372000	48114	1005	45301	289975;289976;289977;289978;289979;289980;289981;289982;289983;289984	389073;389074;389075;389076;389077;389078;389079;389080;389081;389082;389083;389084;389085;389086;389087;389088;389089;389090	389087			18	
STAISLFYELSENDLNFIK	1	Unmodified	2203.1049	0.10486559	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		7	7						7	6	4	5	6	100.95	97.962	2;3	0	90159	160511_QHF_FH_JSI11i_2	525.49	501.42			0.99817	1.0026	9.6253	21	2	Median	1.218	1.0369	4.5395	6	1	Median	0.80302	0.96859	5.554	4	0	Median	0.99817	0.96968	13.903	5	0	Median	0.91463	1.0129	11.439	6	1	Median	20163000000	10040000000	10124000000	5386500000	2436800000	2949700000	4333800000	2224100000	2109700000	5119500000	2408300000	2711200000	5323700000	2970600000	2353100000	48115	1033	45302	289985;289986;289987;289988;289989;289990;289991;289992;289993;289994;289995;289996;289997;289998;289999;290000;290001;290002;290003;290004;290005	389091;389092;389093;389094;389095;389096;389097;389098;389099;389100;389101;389102;389103;389104;389105;389106;389107;389108;389109;389110;389111;389112;389113;389114;389115;389116	389106			26	
STALANQAAMLYVILYFEPSILHTHQAK	1	Unmodified	3129.6321	0.63212695	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.988	91.267	4	2.304E-05	53023	160513_QHF_FH_JSI10Kac_6	78.311	55.256			0.3443	0.4101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3443	0.4101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72987000	60258000	12729000	0	0	0	72987000	60258000	12729000	0	0	0	0	0	0	48116	2302	45303	290006	389117	389117			1	
STAMNESSSGK	1	Unmodified	1097.4659	0.46590248	4533	Q9BY42	RTFDC1	Protein RTF2 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	5.597	5.2731	2	1.9581E-05	2965	160511_QHF_FH_JSI9i_1	103.31	87.109			0.92726	0.94766	17.418	4	0	Median	1.5235	1.2517	NaN	1	0	Median	0.71387	0.85501	NaN	1	0	Median	0.88819	0.88084	NaN	1	0	Median	0.96805	1.0196	NaN	1	0	Median	486010000	243340000	242670000	109050000	47451000	61603000	125130000	71653000	53476000	111570000	59650000	51915000	140260000	64583000	75674000	48117	4533	45304	290007;290008;290009;290010	389118	389118			1	
STANKYQVFFFGTHETAFLGPK	2	Acetyl (K)	2531.2485	0.24851013	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		88.625	79.287	3	9.4712E-60	44277	160513_QHF_FH_JSI11Kac_6	193.4	165.46			0.36896	0.35995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36896	0.35995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	94065000	67927000	26138000	0	0	0	0	0	0	94065000	67927000	26138000	0	0	0	48118	1758	45305	290011	389119;389120;389121	389121	1774		3	
STANNVEIHIPVPNDADSPK	1	Unmodified	2117.0389	0.038911287	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	60.003	59.191	3	4.654E-06	50743	160511_QHF_FH_JSI12i_2	78.708	69.889			0.98617	0.97595	30.208	5	1	Median	1.0303	0.87306	NaN	1	0	Median	0.86446	1.0429	57.979	2	1	Median	0.98617	0.97595	NaN	1	0	Median	0.94423	1.0826	NaN	1	0	Median	370750000	171560000	199190000	51035000	24052000	26983000	224120000	102140000	121980000	47778000	25833000	21945000	47824000	19542000	28282000	48119	4524	45306	290012;290013;290014;290015;290016;290017	389122;389123;389124;389125;389126;389127;389128;389129;389130	389123			9	
STAPAVAYDSK	1	Unmodified	1108.5401	0.5400537	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.396	19.887	2	5.8015E-07	17388	160511_QHF_FH_JSI12i_1	113.44	81.125			0.80585	0.78032	10.963	4	0	Median	0.87539	0.7191	NaN	1	0	Median	0.68364	0.79435	NaN	1	0	Median	0.95884	0.93046	NaN	1	0	Median	0.74184	0.76654	NaN	1	0	Median	256320000	140550000	115770000	58302000	27041000	31260000	48814000	30550000	18264000	75675000	43802000	31873000	73533000	39160000	34372000	48120	4161	45307	290018;290019;290020;290021	389131;389132;389133;389134;389135	389133			5	
STAPIAK	1	Unmodified	686.39629	0.39629	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7973	8.4439	2	0.032748	6037	160511_QHF_FH_JSI11i_1	50.966	5.9929			0.85849	0.93276	9.1689	4	1	Median	1.2366	1.0186	NaN	1	1	Median	0.84395	0.98047	NaN	1	0	Median	0.87327	0.83357	NaN	1	0	Median	0.8363	0.88736	NaN	1	0	Median	622330000	328690000	293640000	111880000	53471000	58407000	149690000	84487000	65204000	153320000	84979000	68340000	207440000	105750000	101690000	48121	2606	45308	290022;290023;290024;290025	389136;389137;389138	389136			3	
STAPSLALLADSEK	1	Unmodified	1401.7351	0.73512469	4945	Q9NR48	ASH1L	Histone-lysine N-methyltransferase ASH1L	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.54	101.36	2	0.034175	87234	160511_QHF_FH_JSI12i_2	39.918	19.589			0.97307	1.0878	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97307	1.0878	NaN	1	0	Median	685320000	360640000	324680000	0	0	0	0	0	0	0	0	0	685320000	360640000	324680000	48122	4945	45309	290026	389139	389139			1	
STAQQELDGKPASPTPVIVASHTANK	2	Unmodified	2646.3613	0.36130806	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	3	2		43.134	42.326	3;4	1.1075E-32	37239	160511_QHF_FH_JSI11i_3	154.69	152.11			0.94078	1.1516	24.249	5	1	Median	1.3072	1.1516	NaN	1	0	Median	1.0307	1.2072	6.2137	2	1	Median	0.78222	0.76891	4.9114	2	0	Median	NaN	NaN	NaN	0	0	Median	495980000	237430000	258540000	100380000	35258000	65125000	172120000	91647000	80469000	223480000	110530000	112950000	0	0	0	48123	1438	45310	290027;290028;290029;290030;290031;290032	389140;389141;389142;389143;389144;389145;389146;389147	389140			8	
STARPNGQPQASK	1	Unmodified	1340.6797	0.6796755	1931	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			5.4644	4.9661	2;3	0.00053394	2980	160511_QHF_FH_JSI9i_3	72.891	49.974			1.1877	0.98659	20.13	3	2	Median	1.3527	1.1208	18.041	2	1	Median	0.75739	0.85587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	161100000	92653000	68446000	121960000	68241000	53724000	39134000	24412000	14722000	0	0	0	0	0	0	48124	1931	45311	290033;290034;290035	389148;389149;389150;389151	389151			4	
STAVTTSSAK	1	Unmodified	951.48729	0.48728985	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	3	1	6.782	2.9738	2	2.028E-09	4015	160511_QHF_FH_JSI12i_1	131.11	102.19			0.97169	0.95471	15.185	8	0	Median	1.1555	0.95017	NaN	1	0	Median	0.81633	0.93129	23.553	3	0	Median	0.97115	0.95927	3.9195	3	0	Plateau	0.74308	0.78183	NaN	1	0	Median	914040000	444210000	469830000	187380000	83669000	103710000	270370000	129620000	140750000	227950000	119530000	108420000	228350000	111390000	116960000	48125	5375	45312	290036;290037;290038;290039;290040;290041;290042;290043	389152;389153;389154;389155;389156;389157;389158;389159	389153			8	
STAYEDYYYHPPPR	0	Unmodified	1757.7686	0.76855009	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	40.614	39.653	2;3	2.3951E-41	33931	160511_QHF_FH_JSI12i_2	171.73	168.22			1.0123	1.0377	13.905	7	0	Median	1.4263	1.2225	20.198	2	0	Median	0.97353	1.2181	NaN	1	0	Median	1.0216	1.0319	0.7815	2	0	Median	0.87862	0.97099	6.1291	2	0	Median	1054400000	506140000	548220000	175970000	69307000	106660000	316420000	147610000	168810000	361910000	179440000	182470000	200060000	109780000	90279000	48126	326	45313	290044;290045;290046;290047;290048;290049;290050;290051;290052	389160;389161;389162;389163;389164;389165;389166;389167;389168;389169;389170;389171;389172;389173;389174;389175;389176	389162			17	
STCIYGGAPK	1	Unmodified	1052.4961	0.4960804	1128;3893	P17844;Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.86	5.49	3	2				1	1				2	2	3	23.54	20.584	2	9.5346E-10	17955	160511_QHF_FH_JSI12i_1	136.8	110.9			1.7373	1.7068	82.281	6	4	Median	NaN	NaN	NaN	0	0	Median	1.6671	1.9864	92.012	2	2	Median	1.7373	1.7068	50.112	2	1	Median	2.8886	3.1243	137.54	2	1	Median	2635700000	888650000	1747100000	0	0	0	991110000	296600000	694510000	1191500000	353070000	838410000	453140000	238980000	214160000	48127	1128;3893	45314	290053;290054;290055;290056;290057;290058;290059	389177;389178;389179;389180;389181;389182;389183;389184	389179			8	
STCTINYSK	1	Unmodified	1072.4859	0.48590964	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	22.278	14.986	2	0.012208	9815	160513_QHF_FH_JSI11Kac_3	66.692	51.541			1.6377	1.6294	13.293	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8873	1.79	NaN	1	1	Median	1.4211	1.4832	NaN	1	1	Median	3482600	1036600	2446000	0	0	0	0	0	0	2083400	584860	1498600	1399200	451790	947390	48128	1659	45315	290060;290061	389185;389186	389185			2	
STCTYVGAAK	1	Unmodified	1056.491	0.49099502	5224	Q9P2T1;P36959	GMPR2;GMPR	GMP reductase 2;GMP reductase 1	yes	no	0	0	0	0				By MS/MS	1	0	2												2	14.197	13.767	2	0.00084105	11569	160511_QHF_FH_JSI12i_1	82.75	68.593			1.3649	1.4305	41.987	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3649	1.4305	41.987	2	2	Median	90958000	35181000	55778000	0	0	0	0	0	0	0	0	0	90958000	35181000	55778000	48129	5224	45316	290062;290063	389187;389188	389188			2	
STDALRK	1	Unmodified	789.43447	0.43446642	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	5.4017	5.4972	2	0.010959	3020	160511_QHF_FH_JSI12i_3	95.541	46.781			0.54158	0.54841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54158	0.54841	NaN	1	1	Median	170330000	116960000	53370000	0	0	0	0	0	0	0	0	0	170330000	116960000	53370000	48130	1168	45317	290064	389189	389189			1	
STDEVDSK	1	Unmodified	879.38216	0.38215607	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.5	5.5	1				1							1	1	5.3708	1.5566	2	0.0025137	2919	160511_QHF_FH_JSI12i_1	87.639	54.799			1.2316	1.2272	20.676	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1307	1.0603	NaN	1	0	Median	1.3415	1.4204	NaN	1	1	Median	111860000	46880000	64980000	0	0	0	0	0	0	3106100	1315500	1790600	108750000	45565000	63189000	48131	2162	45318	290065;290066	389190;389191	389191			2	
STDNAFENPFFK	1	Unmodified	1415.6357	0.635745	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	73.897	73.185	2	1.7043E-05	66451	160511_QHF_FH_JSI11i_1	112.83	100.97			0.98302	0.88229	16.474	9	2	Median	1.0362	0.8712	8.8357	3	2	Median	0.78255	0.95074	10.567	2	0	Median	0.85092	0.84285	20.653	2	0	Median	0.86015	0.91283	36.266	2	0	Median	581830000	291540000	290290000	154170000	75022000	79149000	124680000	73842000	50842000	169330000	78474000	90853000	133650000	64204000	69446000	48132	2137	45319	290067;290068;290069;290070;290071;290072;290073;290074;290075	389192;389193;389194;389195;389196;389197;389198;389199;389200;389201;389202;389203;389204;389205;389206;389207	389193			16	
STDPTMIK	1	Unmodified	891.43717	0.43716853	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.829	19.325	2	0.0017787	16286	160511_QHF_FH_JSI9i_1	85.064	56.957			1.0493	0.93843	25.843	4	0	Median	1.052	0.86564	NaN	1	0	Median	0.53246	0.62021	NaN	1	0	Median	1.0467	1.0173	NaN	1	0	Median	1.0791	1.1166	NaN	1	0	Median	347710000	201780000	145930000	111460000	63214000	48242000	50982000	30609000	20373000	89923000	57471000	32452000	95347000	50485000	44862000	48133	107	45320	290076;290077;290078;290079	389208;389209;389210;389211	389211			4	
STDPVTTK	1	Unmodified	847.42871	0.42871234	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	8.522	8.1727	2	0.001145	6007	160511_QHF_FH_JSI10i_1	93.429	45.58			0.79505	0.65932	16.305	4	2	Linear	1.0069	0.83436	NaN	1	1	Median	0.56256	0.65529	NaN	1	0	Median	0.95142	0.93778	NaN	1	1	Median	0.66437	0.70192	NaN	1	0	Median	846460000	491430000	355040000	199640000	97121000	102520000	240440000	160980000	79460000	194800000	102940000	91858000	211580000	130380000	81201000	48134	5646	45321	290080;290081;290082;290083;290084	389212;389213;389214;389215;389216;389217;389218	389215			7	
STDQTVLEELASIK	1	Unmodified	1532.7934	0.79336785	4236	Q96S59	RANBP9	Ran-binding protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.283	88.849	2	2.1863E-21	80817	160511_QHF_FH_JSI11i_1	174.73	138.31			0.90126	0.89539	5.6795	4	0	Median	0.98096	0.83546	NaN	1	0	Median	0.78228	0.90744	NaN	1	0	Median	1.0009	0.95767	NaN	1	0	Median	0.82803	0.8835	NaN	1	0	Median	159290000	83657000	75634000	27989000	15989000	12000000	39236000	20480000	18756000	47465000	21910000	25555000	44602000	25278000	19324000	48135	4236	45322	290085;290086;290087;290088	389219;389220;389221;389222;389223;389224;389225	389219			7	
STDSEVSQSPAK	1	Unmodified	1234.5677	0.56772501	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.67	5.19	4				2					1	1	2	2	10.225	7.5547	2	8.3255E-42	6850	160511_QHF_FH_JSI12i_1	205.53	172.27			1.0077	1.0527	12.097	6	2	Median	1.2402	1.0136	NaN	1	1	Median	0.92838	1.0933	NaN	1	0	Median	1.0801	1.0436	14.942	2	1	Median	0.92597	0.97919	20.428	2	0	Median	317450000	159710000	157730000	73243000	33636000	39607000	89653000	42825000	46828000	78958000	37159000	41798000	75594000	46094000	29500000	48136	488	45323	290089;290090;290091;290092;290093;290094	389226;389227;389228;389229;389230;389231	389229			6	
STDSSSVSGSLQQETK	1	Unmodified	1639.7537	0.75368788	4782	Q9H8G2	CAAP1	Caspase activity and apoptosis inhibitor 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.106	23.579	2	1.6065E-17	20879	160511_QHF_FH_JSI12i_1	128.9	87.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48137	4782	45324	290095	389232	389232			1	
STDTGVSLPSYEEDQGSK	1	Acetyl (Protein N-term)	1940.8487	0.84871048	5490	Q9Y241	HIGD1A	HIG1 domain family member 1A, mitochondrial	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.82	57.168	2	2.1261E-32	51886	160511_QHF_FH_JSI12i_1	97.86	89.347			1.0649	1.0734	10.944	4	0	Median	1.0791	0.89263	NaN	1	0	Median	0.99113	1.1528	NaN	1	0	Median	1.1293	1.0697	NaN	1	0	Median	1.0509	1.0771	NaN	1	0	Median	226900000	105100000	121800000	44128000	18137000	25991000	49859000	25530000	24329000	62720000	29901000	32819000	70196000	31535000	38661000	48138	5490	45325	290096;290097;290098;290099	389233;389234;389235;389236;389237;389238;389239;389240	389236			8	
STEEPIVK	1	Unmodified	901.47566	0.47566253	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		16.129	15.652	2	0.0030213	13007	160511_QHF_FH_JSI11i_1	75.692	34.504			1.0646	1.2328	18.29	3	0	Plateau	1.2408	1.0132	NaN	1	0	Median	1.0646	1.2328	NaN	1	0	Median	0.86989	0.8554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	399920000	179220000	220700000	130630000	51562000	79071000	151950000	73202000	78744000	117340000	54458000	62886000	0	0	0	48139	2455	45326	290100;290101;290102	389241;389242	389241			2	
STEEQELEK	1	Unmodified	1091.4982	0.49824846	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.615	12.197	2	1.6082E-05	9647	160511_QHF_FH_JSI9i_1	121.64	86.343			0.68869	0.81206	7.7833	4	1	Linear	1.0641	0.87742	NaN	1	1	Median	0.70007	0.83398	NaN	1	0	Median	0.76626	0.73139	NaN	1	0	Median	0.76148	0.79071	NaN	1	0	Median	219310000	115180000	104120000	56607000	24717000	31890000	60654000	34035000	26619000	48854000	32077000	16777000	53190000	24353000	28837000	48140	5412	45327	290103;290104;290105;290106	389243;389244;389245	389245			1	
STEFPRK	1	Unmodified	863.45012	0.45011648	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		8.7163	8.7163	2	0.032343	6464	160511_QHF_FH_JSI11i_3	56.091	36.731			1.2275	1.1419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2275	1.1419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	98290000	35464000	62826000	0	0	0	0	0	0	98290000	35464000	62826000	0	0	0	48141	1576	45328	290107	389246	389246			1	
STEIKWK	2	Acetyl (K)	932.49673	0.49673232	2164	Q01105	SET	Protein SET	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	42.866	32.827	2	8.488E-05	19313	160513_QHF_FH_JSI12Kac_4	125.25	69.811			0.57938	0.64855	146.69	6	1	Median	NaN	NaN	NaN	0	0	Median	0.8712	1.0267	40.476	2	0	Median	0.095226	0.094372	203.29	2	1	Median	0.5874	0.64855	21.531	2	0	Median	143630000	95826000	47804000	0	0	0	27205000	15016000	12189000	84204000	58888000	25316000	32222000	21923000	10300000	48142	2164	45329	290108;290109;290110;290111;290112;290113	389247;389248;389249;389250;389251;389252;389253	389252	2281		7	
STELDSNWSWFQLR	0	Unmodified	1767.8216	0.82164829	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.108	97.806	2	0.0025679	84068	160511_QHF_FH_JSI12i_2	69.672	53.418			0.95383	1.066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95383	1.066	NaN	1	1	Median	8993400	5638200	3355100	0	0	0	0	0	0	0	0	0	8993400	5638200	3355100	48143	4881	45330	290114	389254	389254			1	
STELLIR	0	Unmodified	830.48617	0.48616764	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.46	2	4					2	3		2	4	3	2	40.042	35.037	2	0.002495	30850	160511_QHF_FH_JSI10i_2	110.63	47.919			1.3259	1.2966	98.623	11	1	Median	1.1879	1.0067	6.146	2	0	Median	1.5359	1.8637	11.461	4	0	Median	1.2081	1.2419	185.69	3	1	Plateau	0.96699	1.0689	3.3521	2	0	Median	2300500000	898430000	1402000000	319940000	131180000	188770000	668200000	248480000	419720000	908480000	328550000	579940000	403850000	190220000	213630000	48144	2078;2753;2133	45331	290115;290116;290117;290118;290119;290120;290121;290122;290123;290124;290125	389255;389256;389257;389258;389259;389260;389261;389262;389263;389264;389265;389266;389267;389268;389269;389270;389271;389272;389273	389272			19	
STELLIRK	1	Unmodified	958.58113	0.58113065	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	24.223	23.77	2;3	0.0060709	20655	160511_QHF_FH_JSI10i_2	79.713	50.563			1.2629	1.4022	131.31	2	1	Median	NaN	NaN	NaN	0	0	Median	2.8858	3.5485	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55269	0.55404	NaN	1	0	Median	129210000	72984000	56223000	0	0	0	23664000	5923200	17741000	0	0	0	105540000	67061000	38482000	48145	2078;2753;2133	45332	290126;290127	389274;389275	389274			1	
STEPELIQVK	1	Unmodified	1142.6183	0.61830402	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				2	2	1	2	47.079	43.878	2	2.2155E-11	39288	160511_QHF_FH_JSI11i_1	151.97	133			1.0951	1.2212	21.439	7	2	Median	1.4817	1.1877	44.578	2	0	Median	0.95052	1.1169	18.936	2	1	Median	1.2345	1.2212	NaN	1	0	Median	1.0545	1.1242	18.126	2	1	Median	1644400000	729420000	914940000	509150000	216850000	292290000	383850000	180510000	203340000	425920000	186620000	239300000	325450000	145440000	180010000	48146	2705	45333	290128;290129;290130;290131;290132;290133;290134	389276;389277;389278;389279;389280;389281;389282;389283	389277			8	
STESELK	1	Unmodified	792.38651	0.38651317	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	7.0464	6.7517	2	0.02208	3174	160513_QHF_FH_JSI11Kac_3	60.709	25.816			0.61062	0.67539	37.049	2	0	Median	NaN	NaN	NaN	0	0	Median	0.4481	0.51974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83208	0.87767	NaN	1	0	Median	455380000	257680000	197700000	0	0	0	207730000	134200000	73531000	0	0	0	247650000	123480000	124170000	48147	3896	45334	290135;290136;290137	389284;389285	389284			2	
STESLQANVQR	0	Unmodified	1231.6157	0.61567826	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	5.71	4	4	3		3	3	3	1		4	6	5	6	23.111	19.12	2	3.9617E-168	11346	160513_QHF_FH_JSI10Kac_3	306.58	244.38			0.89744	0.95751	7.6169	20	0	Median	1.264	1.0584	7.6033	4	0	Median	0.82729	0.99415	8.0706	6	0	Median	0.95451	0.93143	4.7012	5	0	Median	0.88608	0.94256	2.8196	5	0	Median	9588100000	4907500000	4680600000	1992500000	852420000	1140000000	2774500000	1401900000	1372600000	2445000000	1427600000	1017400000	2376100000	1225500000	1150600000	48148	1275	45335	290138;290139;290140;290141;290142;290143;290144;290145;290146;290147;290148;290149;290150;290151;290152;290153;290154;290155;290156;290157;290158	389286;389287;389288;389289;389290;389291;389292;389293;389294;389295;389296;389297;389298;389299;389300;389301;389302;389303;389304;389305;389306;389307;389308;389309;389310;389311;389312;389313;389314;389315;389316;389317;389318;389319;389320;389321;389322;389323;389324;389325;389326	389320			41	
STESLQANVQRLK	1	Unmodified	1472.7947	0.79470526	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			35.638	34.682	3	0.0046315	30380	160511_QHF_FH_JSI10i_2	53.479	36.363			0.082277	0.10146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.082277	0.10146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21480000	20204000	1276000	0	0	0	21480000	20204000	1276000	0	0	0	0	0	0	48149	1275	45336	290159	389327	389327			1	
STETALYRK	1	Unmodified	1067.5611	0.56112349	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	1	2	1	12.028	11.771	2	0.00035239	9599	160511_QHF_FH_JSI10i_2	82.426	54.003			0.94874	0.89402	23.396	5	0	Median	1.5792	1.3786	NaN	1	0	Median	0.67551	0.82653	NaN	1	0	Median	1.0605	1.0236	19.135	2	0	Median	0.8123	0.81459	NaN	1	0	Median	331710000	189600000	142110000	33574000	12520000	21054000	44168000	25700000	18468000	132300000	68408000	63897000	121660000	82971000	38690000	48150	2528	45337	290160;290161;290162;290163;290164	389328;389329;389330;389331;389332	389332			5	
STETSDFENIESPLNER	0	Unmodified	1966.8756	0.87559393	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.211	62.582	2	1.7335E-65	56625	160511_QHF_FH_JSI10i_1	229.32	213.57			1.1511	1.1878	12.756	4	0	Median	1.3784	1.1487	NaN	1	0	Median	1.0826	1.2282	NaN	1	0	Median	0.96593	0.93862	NaN	1	0	Median	1.2239	1.2298	NaN	1	0	Median	108560000	51142000	57420000	23149000	8724200	14425000	31700000	13512000	18188000	28432000	15789000	12643000	25281000	13116000	12165000	48151	4152	45338	290165;290166;290167;290168	389333;389334;389335;389336;389337;389338	389337			6	
STFAVFTHLPGK	1	Unmodified	1303.6925	0.69247202	5513	Q9Y2D4	EXOC6B	Exocyst complex component 6B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	64.711	63.813	3	0.00012675	55048	160511_QHF_FH_JSI12i_3	83.455	76.085			4.9691	5.396	28.725	2	2	Median	NaN	NaN	NaN	0	0	Median	3.8588	4.4041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.399	6.6113	NaN	1	1	Median	628700000	48787000	579910000	0	0	0	154960000	16243000	138720000	0	0	0	473740000	32543000	441190000	48152	5513	45339	290169;290170	389339;389340	389340			2	
STFKPVIDGSMLK	2	Unmodified	1421.7588	0.75883702	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	58.964	58.702	3	0.020665	50494	160511_QHF_FH_JSI12i_3	36.219	26.162			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48153	3419	45340	290171	389341	389341			1	
STFREESPLR	0	Unmodified	1220.6149	0.61494998	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			25.272	23.964	3	0.024898	19342	160511_QHF_FH_JSI9i_3	33.761	26.482			1.0923	1.0667	17.515	2	0	Median	1.1591	0.94244	NaN	1	0	Median	1.0295	1.2073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88611000	38732000	49879000	62930000	26370000	36559000	25681000	12362000	13319000	0	0	0	0	0	0	48154	5124	45341	290172;290173	389342	389342			1	
STFSFSMTKPSEK	2	Unmodified	1475.6966	0.6966307	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		46.608	45.425	2;3	5.0669E-16	39896	160511_QHF_FH_JSI11i_3	138.99	118.12			0.82894	0.82721	18.284	4	3	Median	1.1183	0.90733	NaN	1	0	Median	0.77685	0.89004	23.427	2	2	Median	0.75087	0.70084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131540000	78061000	53482000	29459000	13368000	16091000	63898000	42522000	21375000	38187000	22171000	16016000	0	0	0	48155	1684	45342	290174;290175;290176;290177;290178;290179;290180	389343;389344;389345;389346;389347;389348;389349;389350	389344			8	
STFSTNYR	0	Unmodified	974.44576	0.44575938	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.58	3	4	4				2	3	4	4	6	5	5	22.784	18.515	2	2.06E-31	16064	160511_QHF_FH_JSI9i_2	211.1	182.59			1.0123	1.0083	10.275	20	1	Median	1.1434	0.98211	4.8701	4	0	Median	0.8125	0.96761	11.433	6	0	Median	1.0566	1.0334	10.78	5	0	Median	0.96082	1.0669	10.183	5	1	Median	14192000000	7001900000	7190500000	2639700000	1296700000	1343000000	3561400000	1934000000	1627400000	3905500000	1885800000	2019700000	4085800000	1885400000	2200400000	48156	842	45343	290181;290182;290183;290184;290185;290186;290187;290188;290189;290190;290191;290192;290193;290194;290195;290196;290197;290198;290199;290200	389351;389352;389353;389354;389355;389356;389357;389358;389359;389360;389361;389362;389363;389364;389365;389366;389367;389368;389369;389370;389371;389372;389373;389374;389375;389376;389377;389378;389379;389380;389381;389382	389366			32	
STFVLDEFK	1	Unmodified	1084.5441	0.54407645	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.24	3	4	3			1	4	5		5	6	5	4	70.32	64.29	2	2.5034E-43	35309	160513_QHF_FH_JSI11Kac_5	207.95	161.53			0.98723	0.99427	24.612	20	0	Median	1.1866	0.98384	21.503	5	0	Median	0.80728	0.96846	38.872	6	0	Median	0.97608	1.0048	17.679	5	0	Median	0.90234	0.99962	9.4172	4	0	Median	12759000000	6355100000	6403900000	1831100000	835610000	995510000	3215400000	1577000000	1638400000	4801900000	2307500000	2494400000	2910600000	1635000000	1275600000	48157	1284	45344	290201;290202;290203;290204;290205;290206;290207;290208;290209;290210;290211;290212;290213;290214;290215;290216;290217;290218;290219;290220	389383;389384;389385;389386;389387;389388;389389;389390;389391;389392;389393;389394;389395;389396;389397;389398;389399;389400;389401;389402;389403;389404;389405;389406;389407;389408;389409;389410;389411;389412;389413;389414;389415;389416;389417;389418;389419;389420;389421;389422;389423;389424;389425;389426;389427	389419			44	
STFVLDEFKR	1	Unmodified	1240.6452	0.64518747	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	3	1	3	2	58.373	56.958	2;3	4.2676E-08	50396	160511_QHF_FH_JSI11i_3	118.4	105.83			1.8435	1.5542	76.068	9	1	Median	2.3785	2.0316	17.301	3	1	Median	0.2572	0.3166	NaN	1	0	Median	0.86327	0.80539	5.9439	3	0	Median	2.9364	2.978	18.988	2	0	Median	932330000	380790000	551540000	254160000	80984000	173180000	82428000	65718000	16710000	237940000	130490000	107450000	357810000	103600000	254210000	48158	1284	45345	290221;290222;290223;290224;290225;290226;290227;290228;290229	389428;389429;389430;389431;389432;389433;389434;389435;389436;389437;389438	389429			9	
STFVLDEFKR	1	Acetyl (K)	1282.6558	0.65575216	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.5	0.5								1	1			1	1	79.096	69.212	2	2.8007E-07	37908	160513_QHF_FH_JSI11Kac_6	134.51	85.712			0.48526	0.47754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48526	0.47754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27095000	19375000	7719800	0	0	0	0	0	0	25534000	17814000	7719800	1560900	1560900	0	48159	1284	45345	290230;290231	389439;389440	389439	1210		2	
STFVNILK	1	Unmodified	920.53312	0.53311783	1295	P27707	DCK	Deoxycytidine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	1	2		58.748	57.899	2	0.0011031	51258	160511_QHF_FH_JSI10i_2	93.992	52.489			0.84336	0.8643	28.215	4	1	Median	1.1884	0.99463	15.179	2	0	Median	0.67592	0.83615	NaN	1	0	Median	0.59322	0.56324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	251980000	136950000	115020000	83921000	41680000	42241000	59512000	37389000	22123000	108540000	57885000	50658000	0	0	0	48160	1295	45346	290232;290233;290234;290235;290236	389441;389442;389443;389444;389445	389445			5	
STGCDFAVSPK	1	Unmodified	1167.523	0.52302343	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9	5.66	1					2					1	1	1	34.684	28.724	2	6.3726E-05	16432	160513_QHF_FH_JSI12Kac_3	96.89	80.557			0.94262	1.1047	26.255	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94262	1.1047	NaN	1	0	Median	0.84454	0.82398	NaN	1	0	Median	1.2678	1.3913	NaN	1	0	Median	171360000	84449000	86908000	0	0	0	159610000	79344000	80264000	6665700	3222200	3443400	5083600	1882200	3201400	48161	1865	45347	290237;290238;290239	389446;389447;389448	389448			2	
STGDVPHTSVTGDSGSGK	1	Unmodified	1687.7649	0.76492127	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	16.184	15.716	2;3	7.7101E-07	12961	160511_QHF_FH_JSI9i_1	98.391	90.214			0.9148	0.93734	21.771	4	1	Median	1.2293	0.98908	NaN	1	0	Median	0.52285	0.62363	NaN	1	1	Median	1.0053	0.98315	NaN	1	0	Median	0.83248	0.89365	NaN	1	0	Median	170040000	98624000	71411000	40798000	21368000	19430000	44399000	29781000	14617000	41015000	22882000	18133000	43823000	24592000	19231000	48162	1501	45348	290240;290241;290242;290243;290244	389449;389450;389451;389452;389453;389454;389455;389456;389457	389455			9	
STGDVPHTSVTGDSGSGKPFK	2	Unmodified	2059.9811	0.98106206	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	27.773	27.758	3;4	0.0001147	23210	160511_QHF_FH_JSI12i_3	59.975	56.314			1.1495	1.0634	29.805	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91382	0.84618	32.32	2	2	Median	1.1116	1.1786	NaN	1	1	Median	78877000	38324000	40553000	0	0	0	0	0	0	57820000	31737000	26082000	21058000	6586900	14471000	48163	1501	45349	290245;290246;290247	389458;389459;389460	389460			3	
STGDVPHTSVTGDSGSGKPFK	2	Acetyl (K)	2101.9916	0.99162674	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	49.895	39.451	3	1.3919E-21	22191	160513_QHF_FH_JSI10Kac_4	138.07	129.13			0.66557	0.71923	33.117	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95909	1.1201	NaN	1	0	Median	0.59045	0.58597	NaN	1	0	Median	0.66557	0.71923	NaN	1	0	Median	25407000	12580000	12828000	0	0	0	10075000	4567400	5507900	8090200	4297400	3792800	7241600	3714900	3526800	48164	1501	45349	290248;290249;290250	389461;389462;389463	389462	1519		3	
STGEAFVQFASK	1	Unmodified	1270.6194	0.61936665	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.05	4	5	2				1	4		5	3	4	4	56.406	52.243	2	1.6913E-28	45780	160511_QHF_FH_JSI9i_2	162.26	121.91			0.88746	0.96808	45.994	15	6	Median	1.9462	1.6359	82.598	4	4	Median	0.98311	1.1868	28.454	3	0	Plateau	1.0415	0.99221	29.81	4	1	Median	0.86867	0.93706	18.061	4	1	Median	1856400000	844540000	1011900000	471940000	169900000	302030000	385030000	223650000	161380000	476490000	183350000	293140000	522990000	267640000	255350000	48165	1382	45350	290251;290252;290253;290254;290255;290256;290257;290258;290259;290260;290261;290262;290263;290264;290265;290266	389464;389465;389466;389467;389468;389469;389470;389471;389472;389473;389474;389475;389476;389477;389478;389479;389480;389481;389482;389483;389484	389476			21	
STGEAFVQFASQEIAEK	1	Unmodified	1840.8843	0.88430813	1383;1864	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.22	9	9	7					2	1	8	5	8	7	83.941	82.284	2;3	9.3436E-184	72212	160511_QHF_FH_JSI12i_2	320.57	281.7			1.0916	1.013	21.114	27	5	Median	1.1187	0.94377	18.967	8	3	Median	0.7235	0.8541	7.8101	5	1	Median	1.1168	1.1278	8.7675	8	0	Median	1.1465	1.2167	33.212	6	1	Median	6878300000	3452700000	3425700000	1360400000	615430000	744960000	1427200000	837780000	589440000	2261200000	1073100000	1188100000	1829500000	926320000	903180000	48166	1383;1864	45351	290267;290268;290269;290270;290271;290272;290273;290274;290275;290276;290277;290278;290279;290280;290281;290282;290283;290284;290285;290286;290287;290288;290289;290290;290291;290292;290293;290294	389485;389486;389487;389488;389489;389490;389491;389492;389493;389494;389495;389496;389497;389498;389499;389500;389501;389502;389503;389504;389505;389506;389507;389508;389509;389510;389511;389512;389513;389514;389515;389516;389517;389518;389519;389520;389521;389522;389523;389524;389525;389526;389527;389528;389529;389530;389531;389532;389533;389534;389535;389536;389537;389538;389539;389540;389541	389493			57	
STGEALVQGLMGAAVTLK	1	Unmodified	1744.9393	0.93932058	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.36	101.23	3	2.1742E-11	88926	160511_QHF_FH_JSI11i_2	108.49	86.335			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48167	493	45352	290295	389542	389542			1	
STGELVVQWHLKPVEQK	2	Unmodified	1977.0684	0.068360922	3701	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	61.461	58.698	3	2.4408E-05	52120	160511_QHF_FH_JSI11i_3	90.654	80.866			0.31536	0.295	89.541	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1672	1.3408	NaN	1	0	Median	0.31536	0.295	NaN	1	1	Median	0.27087	0.2747	NaN	1	1	Median	307700000	232850000	74857000	0	0	0	15761000	8431900	7329400	160220000	122190000	38030000	131720000	102230000	29498000	48168	3701	45353	290296;290297;290298	389543;389544;389545;389546	389543			4	
STGEPLGHVPAR	0	Unmodified	1219.6309	0.63093439	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	3	3	4	20.012	19.534	2;3	3.9747E-14	16737	160511_QHF_FH_JSI10i_2	130.66	84.659			1.3258	1.286	20.977	6	1	Median	1.5847	1.393	NaN	1	0	Median	1.0861	1.3356	35.171	2	1	Median	1.1294	1.0847	12.777	2	0	Median	1.4003	1.4449	NaN	1	0	Median	683330000	315220000	368110000	99761000	40105000	59656000	167540000	86781000	80762000	302940000	139240000	163700000	113090000	49096000	63991000	48169	3927	45354	290299;290300;290301;290302;290303;290304;290305;290306;290307;290308;290309	389547;389548;389549;389550;389551;389552;389553;389554;389555;389556	389555			10	
STGETIR	0	Unmodified	762.38718	0.38718187	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	6.0624	4.8933	2	0.0042825	3466	160511_QHF_FH_JSI11i_2	99.139	45.954			1.035	1.0377	7.4647	9	1	Median	1.2024	1.0119	3.5536	2	1	Median	0.88585	1.0664	6.6744	2	0	Median	1.1602	1.1278	9.6366	3	0	Median	0.93199	1.0198	3.0785	2	0	Median	5983100000	3016200000	2967000000	1219600000	568100000	651520000	1431000000	762940000	668010000	1803200000	863790000	939360000	1529400000	821330000	708080000	48170	1132	45355	290310;290311;290312;290313;290314;290315;290316;290317;290318	389557;389558;389559;389560;389561;389562;389563;389564;389565;389566;389567;389568	389567			12	
STGFETLVVTSEDGITK	1	Unmodified	1782.8887	0.8887248	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	2	2	1	78.077	77.417	2;3	1.0792E-37	68747	160511_QHF_FH_JSI9i_1	243.7	221.22			0.90604	0.97713	14.322	8	4	Median	0.9097	0.78743	12.477	3	2	Median	0.83941	1.0242	3.6971	2	1	Median	0.92215	0.91102	15.405	2	1	Median	1.0664	1.1026	NaN	1	0	Median	516170000	263910000	252260000	179580000	93448000	86130000	70427000	36430000	33998000	131090000	67031000	64056000	135080000	67003000	68075000	48171	538	45356	290319;290320;290321;290322;290323;290324;290325;290326	389569;389570;389571;389572;389573;389574;389575;389576;389577	389571			8	
STGGAPTFNVTVTK	1	Unmodified	1378.7092	0.70924429	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.68	6.25	7	4	4	1	3	3	3	4	5	6	9	9	10	52.218	46.195	2;3	2.9879E-37	6756	160513_QHF_FH_JSI9Kac_3	220.66	181.35			0.96226	0.97972	23.956	33	9	Median	1.031	0.86151	12.756	6	1	Median	0.79142	1.057	10.694	9	1	Plateau	1.0122	0.99606	21.877	8	2	Median	0.94378	0.97946	37.42	10	5	Median	57008000000	26549000000	30458000000	8806600000	3927200000	4879400000	10653000000	5156300000	5497100000	16926000000	8330000000	8595800000	20622000000	9135700000	11486000000	48172	876	45357	290327;290328;290329;290330;290331;290332;290333;290334;290335;290336;290337;290338;290339;290340;290341;290342;290343;290344;290345;290346;290347;290348;290349;290350;290351;290352;290353;290354;290355;290356;290357;290358;290359;290360	389578;389579;389580;389581;389582;389583;389584;389585;389586;389587;389588;389589;389590;389591;389592;389593;389594;389595;389596;389597;389598;389599;389600;389601;389602;389603;389604;389605;389606;389607;389608;389609;389610;389611;389612;389613;389614;389615;389616;389617;389618;389619;389620;389621;389622;389623;389624;389625;389626;389627;389628;389629;389630;389631;389632;389633;389634;389635;389636;389637;389638;389639;389640;389641;389642;389643;389644;389645;389646;389647;389648;389649	389615			71	
STGGAPTFNVTVTKTDK	2	Unmodified	1722.8788	0.87882882	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	40.356	40.251	3	1.0112E-06	34378	160511_QHF_FH_JSI12i_3	119.23	99.127			0.84301	0.81812	64.469	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56163	0.5186	NaN	1	0	Median	1.2653	1.2906	NaN	1	0	Median	148400000	78779000	69620000	0	0	0	0	0	0	51251000	37302000	13949000	97149000	41477000	55671000	48173	876	45358	290361;290362	389650	389650			1	
STGGDFGNPLRK	1	Acetyl (Protein N-term)	1289.6364	0.6364137	1175	P20340	RAB6A	Ras-related protein Rab-6A	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			2	1	2	2	44.959	41.221	2	8.8164E-16	35648	160511_QHF_FH_JSI11i_2	100.02	81.705			0.9472	0.96955	108.16	7	1	Median	0.27748	0.23378	200.9	2	1	Median	0.79952	0.99757	NaN	1	0	Median	1.0129	1.0156	6.559	2	0	Median	0.88155	0.95521	9.9795	2	0	Median	562550000	385560000	176990000	275050000	228380000	46669000	98161000	55678000	42483000	108840000	60380000	48461000	80500000	41125000	39375000	48174	1175	45359	290363;290364;290365;290366;290367;290368;290369	389651;389652;389653;389654;389655;389656;389657;389658;389659;389660;389661	389657			11	
STGGKAPR	1	Acetyl (K)	814.42972	0.42971539	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	1.11					2	4	2	4		2	4	2	4	6.8733	-2.2239	2	2.5149E-06	2044	160513_QHF_FH_JSI10Kac_3	133.12	72.328			1.1062	1.0919	23.008	11	0	Median	1.3039	1.1097	NaN	1	0	Median	1.2521	1.4223	3.14	4	0	Median	1.0945	1.0787	1.7206	2	0	Median	0.86424	0.90845	10.12	4	0	Median	2465500000	919510000	1546000000	608030000	11276000	596760000	814690000	354430000	460260000	135080000	66746000	68329000	907660000	487060000	420600000	48175	2078;2753;2133	45360	290370;290371;290372;290373;290374;290375;290376;290377;290378;290379;290380;290381	389662;389663;389664;389665;389666;389667;389668;389669;389670;389671;389672;389673;389674;389675;389676	389671	2167		15	
STGGKAPRK	2	Acetyl (K)	942.52468	0.52467841	2078;2753;2133	P68431;Q71DI3;Q6NXT2;Q16695;P84243	HIST1H3A;HIST2H3A;H3F3C;HIST3H3;H3F3A	Histone H3.1;Histone H3.2;Histone H3.3C;Histone H3.1t;Histone H3.3	no	no	1	0	0	2		By MS/MS			15	0								1			1			5.1308	-4.3186	3	0.00073727	1485	160513_QHF_FH_JSI10Kac_5	90.906	48.797			1.942	2.3286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.942	2.3286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73911000	21416000	52494000	0	0	0	73911000	21416000	52494000	0	0	0	0	0	0	48176	2078;2753;2133	45361	290382	389677;389678	389677	2164;2167		2	
STGKNLDSVQK	2	Acetyl (K)	1217.6252	0.62518031	2520	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			30.331	22.066	2	0.00010751	12756	160513_QHF_FH_JSI10Kac_3	97.163	77.022			2.5677	3.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.5677	3.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5784600	3858700	1925900	0	0	0	5784600	3858700	1925900	0	0	0	0	0	0	48177	2520	45362	290383	389679	389679	2514		1	
STGLELETPSLVPVK	1	Unmodified	1568.8661	0.86613887	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	80.123	79.677	2	2.3306E-06	72594	160511_QHF_FH_JSI11i_1	124.12	108.75			1.0056	0.94468	30.719	5	2	Median	1.5381	1.266	NaN	1	0	Median	0.58389	0.66245	NaN	1	0	Median	1.2382	1.1727	30.573	2	2	Median	0.87596	0.91171	NaN	1	0	Median	123580000	60195000	63384000	24063000	11648000	12415000	22379000	14932000	7446400	57299000	22014000	35286000	19838000	11602000	8236300	48178	4206	45363	290384;290385;290386;290387;290388	389680;389681;389682;389683;389684;389685	389681			5	
STGLILDSGATHTTAIPVHDGYVLQQGIVK	1	Unmodified	3090.635	0.63496372	758	O96019	ACTL6A	Actin-like protein 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	2	7	3	80.657	80.213	3;4	9.6676E-91	70778	160511_QHF_FH_JSI11i_2	229.04	223.01			1.018	0.92992	14.34	14	6	Median	1.056	0.88812	3.7637	2	0	Median	0.7196	0.88531	0.44576	2	0	Median	1.0058	1.0306	13.589	7	6	Median	1.2379	1.2614	15.683	3	0	Plateau	1823500000	838790000	984740000	273760000	125060000	148700000	259880000	143890000	115990000	969140000	429900000	539240000	320760000	139940000	180810000	48179	758	45364	290389;290390;290391;290392;290393;290394;290395;290396;290397;290398;290399;290400;290401;290402	389686;389687;389688;389689;389690;389691;389692;389693;389694;389695;389696;389697;389698;389699;389700;389701;389702;389703;389704;389705;389706;389707;389708;389709;389710	389698			25	
STGLNAVPSQILEGQWAAR	0	Unmodified	1997.033	0.033038048	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	88.522	88.089	2	1.0237E-05	76482	160511_QHF_FH_JSI12i_3	91.62	79.455			1.0317	1.0851	12.226	6	0	Median	0.97668	0.847	NaN	1	0	Median	0.77734	0.96394	NaN	1	0	Median	1.1845	1.1387	1.3072	2	0	Median	1.0317	1.0958	6.9055	2	0	Median	102750000	50520000	52230000	14590000	7710200	6879300	21750000	12345000	9405100	31185000	13868000	17318000	35225000	16597000	18628000	48180	859	45365	290403;290404;290405;290406;290407;290408	389711;389712;389713;389714;389715;389716	389715			4	
STGNFLTLTQAIDK	1	Unmodified	1507.7882	0.7882229	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.19	1	8	6					4		4	5	6	4	80.29	77.587	2;3	1.1685E-65	70410	160511_QHF_FH_JSI10i_2	232.78	192.99			1.0174	1.0126	33.026	19	6	Median	1.1132	0.92752	17.55	4	1	Median	0.85056	1.0126	34.756	5	1	Median	1.1236	1.0801	40.969	6	3	Median	0.99409	1.0635	37.913	4	1	Median	1549600000	750170000	799420000	207640000	100120000	107520000	370950000	186870000	184080000	722270000	352670000	369600000	248730000	110500000	138220000	48181	5215	45366	290409;290410;290411;290412;290413;290414;290415;290416;290417;290418;290419;290420;290421;290422;290423;290424;290425;290426;290427	389717;389718;389719;389720;389721;389722;389723;389724;389725;389726;389727;389728;389729;389730;389731;389732;389733;389734;389735;389736;389737;389738;389739;389740;389741;389742;389743;389744;389745	389741			28	
STGPTAATGSNR	0	Acetyl (Protein N-term)	1160.5422	0.54217896	2717	Q15836	VAMP3	Vesicle-associated membrane protein 3	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.406	10.917	2	0.00010921	8732	160511_QHF_FH_JSI12i_1	88.681	64.725			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48182	2717	45367	290428;290429;290430	389746;389747;389748	389746			3	
STGPTAATGSNRR	0	Acetyl (Protein N-term)	1316.6433	0.64328999	2717	Q15836	VAMP3	Vesicle-associated membrane protein 3	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	8.4872	8.091	2	1.5253E-17	5792	160511_QHF_FH_JSI11i_2	94.692	44.652			0.17934	0.20093	13.678	2	0	Median	NaN	NaN	NaN	0	0	Median	0.1791	0.22134	NaN	1	0	Median	0.17957	0.18241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	256420000	203000000	53425000	0	0	0	99980000	82260000	17719000	156440000	120740000	35706000	0	0	0	48183	2717	45368	290431;290432;290433;290434;290435;290436;290437;290438	389749;389750;389751;389752;389753;389754;389755;389756	389755			8	
STGSFVGELMYK	1	Unmodified	1317.6275	0.6274885	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	2	1	1	1	70.213	67.779	2	1.2243E-22	59559	160511_QHF_FH_JSI11i_2	172.27	155.6			1.1833	1.3081	14.83	5	2	Median	1.6013	1.3851	21.885	2	1	Median	1.0901	1.3553	NaN	1	0	Median	1.0935	1.0924	NaN	1	0	Median	1.1833	1.3081	NaN	1	1	Median	760010000	363180000	396830000	144970000	65152000	79823000	176180000	81100000	95083000	237990000	119200000	118780000	200860000	97725000	103140000	48184	5345	45369	290439;290440;290441;290442;290443	389757;389758;389759;389760;389761;389762;389763	389760			7	
STGSIVGQQPFGGAR	0	Unmodified	1460.7372	0.73719038	1331	P30038	ALDH4A1	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	43.896	42.68	2	8.2045E-07	36483	160511_QHF_FH_JSI12i_2	130.94	114.72			1.2949	1.2683	7.6847	2	2	Median	1.3614	1.2012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2316	1.3391	NaN	1	1	Median	67158000	27752000	39406000	27732000	12765000	14967000	0	0	0	0	0	0	39426000	14987000	24439000	48185	1331	45370	290444;290445	389764;389765	389764			2	
STGSSQLTHK	1	Unmodified	1044.52	0.51998696	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.42	3.52		7	4					1		2	1	5	4	5.5044	4.4966	2;3	1.2381E-25	2871	160511_QHF_FH_JSI12i_3	187.55	149.58			1.1173	1.1068	23.431	12	2	Median	1.3338	1.1399	5.5002	2	0	Median	0.76003	0.9296	NaN	1	0	Median	1.144	1.1172	13.696	5	1	Median	1.0044	1.0323	39.571	4	1	Median	1754700000	828900000	925780000	148550000	73418000	75135000	89840000	46981000	42859000	641210000	221760000	419460000	875080000	486750000	388330000	48186	5330	45371	290446;290447;290448;290449;290450;290451;290452;290453;290454;290455;290456;290457	389766;389767;389768;389769;389770;389771;389772;389773;389774;389775;389776;389777	389776			12	
STGTETGSNINVNSELNPSTGNR	0	Unmodified	2348.084	0.084023579	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.833	43.169	2	6.1692E-142	39019	160511_QHF_FH_JSI11i_1	356.01	328.91			1.0485	0.98907	5.9399	4	0	Median	1.1975	0.99422	NaN	1	0	Median	0.84116	0.98149	NaN	1	0	Median	1.0489	0.98394	NaN	1	0	Median	1.0481	1.1104	NaN	1	0	Median	175790000	86223000	89562000	44452000	21297000	23155000	41069000	21986000	19083000	49622000	23316000	26306000	40642000	19623000	21018000	48187	2789	45372	290458;290459;290460;290461	389778;389779;389780;389781;389782;389783;389784;389785	389779			8	
STGTFVVSQPLNYR	0	Acetyl (Protein N-term)	1609.81	0.81002097	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.96	4			1	1					1	3	1	1	76.768	73.655	2	6.8641E-12	67845	160511_QHF_FH_JSI10i_1	190.86	178.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48188	1645	45373	290462;290463;290464;290465;290466;290467	389786;389787;389788;389789;389790;389791;389792	389789			7	
STGVFQDEELLFSHK	1	Unmodified	1735.8417	0.84171503	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.308	72.431	3	2.6033E-05	63505	160511_QHF_FH_JSI11i_2	91.355	85.695			0.92126	0.96474	8.1033	4	0	Median	1.2034	1.0144	NaN	1	0	Median	0.70634	0.86861	NaN	1	0	Median	0.92873	0.91754	NaN	1	0	Median	0.91385	1.0283	NaN	1	0	Median	172280000	90604000	81671000	25024000	12407000	12618000	46027000	23502000	22525000	54629000	27245000	27384000	46595000	27451000	19144000	48189	3011	45374	290468;290469;290470;290471	389793;389794;389795;389796;389797;389798	389796			5	
STGYDPVK	1	Unmodified	865.41815	0.41814765	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.754	15.286	2	0.005887	12588	160511_QHF_FH_JSI11i_1	64.265	50.593			1.0884	1.0963	3.5998	4	0	Median	1.3334	1.0856	NaN	1	0	Median	0.94091	1.1072	NaN	1	0	Median	1.1912	1.1478	NaN	1	0	Median	0.99441	1.0534	NaN	1	0	Median	1520900000	733000000	787860000	386130000	156110000	230020000	397520000	217070000	180450000	305900000	171210000	134690000	431310000	188610000	242690000	48190	5254	45375	290472;290473;290474;290475	389799;389800;389801;389802;389803	389799			5	
STGYSSQPGAK	1	Unmodified	1081.504	0.50400254	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	8.6128	4.611	2	0.000285	4951	160511_QHF_FH_JSI9i_1	90.108	72.723			1.3713	1.2282	35.626	2	1	Median	1.9019	1.58	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98877	0.95468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78655000	29362000	49293000	77038000	28362000	48675000	0	0	0	1617000	999390	617590	0	0	0	48191	2302	45376	290476;290477;290478	389804;389805;389806	389806			3	
STHAGSKYIR	1	Acetyl (K)	1160.5938	0.5938206	3095	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		17.887	8.6836	3	0.0011001	6743	160513_QHF_FH_JSI11Kac_6	64.82	54.815			0.30576	0.30647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30576	0.30647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2958500	2229100	729490	0	0	0	0	0	0	2958500	2229100	729490	0	0	0	48192	3095	45377	290479	389807	389807	2767		1	
STHDHWK	1	Unmodified	909.40931	0.4093143	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	5.476	5.5715	2;3	0.0031567	3081	160511_QHF_FH_JSI12i_3	67.032	50.829			1.4874	1.5075	25.903	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4874	1.5075	25.903	2	1	Median	487760000	255810000	231950000	0	0	0	0	0	0	0	0	0	487760000	255810000	231950000	48193	2641	45378	290480;290481	389808;389809	389809			2	
STHGLAILGPENPK	1	Unmodified	1432.7674	0.76742787	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	40.763	40.623	2;3	0.00043695	35815	160511_QHF_FH_JSI11i_3	96.64	79.204			2.6051	2.6608	34.967	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.6051	2.6608	34.967	2	2	Median	701940000	231110000	470830000	0	0	0	0	0	0	10046000	10046000	0	691890000	221060000	470830000	48194	2900	45379	290482;290483;290484;290485	389810;389811;389812;389813	389810			4	
STHGPGMAMNWPQFEEWSLDTQR	0	Unmodified	2704.1799	0.17985499	5378	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			93.775	92.798	3	1.141E-05	77298	160511_QHF_FH_JSI10i_3	61.222	49.142			0.97873	1.1224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97873	1.1224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11349000	6643400	4705400	0	0	0	11349000	6643400	4705400	0	0	0	0	0	0	48195	5378	45380	290486	389814;389815	389814			2	
STHQAAIVSK	1	Unmodified	1040.5615	0.56145784	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.69		8	5					1	3	3	4	5	5	8.4561	6.2966	2;3	4.6856E-14	5264	160511_QHF_FH_JSI11i_3	159.83	102.24			0.87135	0.97222	28.99	17	1	Median	0.99458	0.86471	32.09	3	0	Median	0.73096	0.88174	18.535	4	0	Median	1.0829	1.0334	18.102	5	0	Median	0.86449	0.97222	43.071	5	1	Median	2483300000	1367300000	1116000000	191360000	82553000	108810000	448150000	292450000	155700000	862380000	475010000	387370000	981410000	517250000	464160000	48196	2233	45381	290487;290488;290489;290490;290491;290492;290493;290494;290495;290496;290497;290498;290499;290500;290501;290502;290503	389816;389817;389818;389819;389820;389821;389822;389823;389824;389825;389826;389827;389828;389829;389830;389831;389832;389833;389834;389835;389836;389837;389838;389839	389816			24	
STHQCWK	1	Unmodified	945.41269	0.41268512	4682	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	5.7882	5.836	2	0.006833	3368	160511_QHF_FH_JSI12i_3	89.673	76.685			0.87514	0.86307	34.18	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71363	0.67777	NaN	1	0	Median	1.0732	1.099	NaN	1	0	Median	131880000	70916000	60966000	0	0	0	0	0	0	65182000	35997000	29185000	66700000	34918000	31781000	48197	4682	45382	290504;290505	389840;389841	389841			2	
STHSELLEDYYQSGR	0	Unmodified	1783.8013	0.80130678	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.54		8	5						1	1	3	4	6	43.616	42.898	2;3	5.8605E-15	37786	160511_QHF_FH_JSI10i_2	182.08	172.89			1.0929	1.1057	16.942	10	2	Median	1.9027	1.6281	NaN	1	1	Median	0.8919	1.0833	22.237	2	0	Median	1.0963	1.0963	3.5531	3	1	Median	1.0205	1.083	12.737	4	0	Median	654940000	296100000	358840000	10745000	2276100	8468700	119730000	63824000	55908000	239670000	110830000	128840000	284790000	119180000	165620000	48198	1304	45383	290506;290507;290508;290509;290510;290511;290512;290513;290514;290515;290516;290517;290518;290519	389842;389843;389844;389845;389846;389847;389848;389849;389850;389851;389852;389853;389854;389855;389856;389857	389849			16	
STHTLDLSR	0	Unmodified	1028.5251	0.52507234	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	15.926	15.477	2;3	9.2754E-05	13030	160511_QHF_FH_JSI10i_2	72.643	59.29			0.97957	1.1467	21.779	11	3	Median	1.3157	1.1412	0.67085	2	0	Median	0.97885	1.2038	0.99825	2	0	Median	1.3091	1.2118	27.271	3	2	Median	0.84942	0.93038	23.514	4	1	Median	626080000	305560000	320520000	93080000	34801000	58279000	113520000	51553000	61968000	182940000	86376000	96568000	236540000	132830000	103710000	48199	2271	45384	290520;290521;290522;290523;290524;290525;290526;290527;290528;290529;290530	389858;389859;389860;389861;389862;389863;389864;389865;389866;389867;389868;389869	389866			12	
STIETALK	1	Unmodified	861.48075	0.48074791	4396	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.132	25.234	2	0.020564	21747	160511_QHF_FH_JSI9i_1	45.7	9.13			1.074	0.99732	20.644	2	0	Median	1.3775	1.1541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8374	0.86186	NaN	1	0	Median	163440000	68654000	94782000	63718000	21643000	42075000	0	0	0	0	0	0	99719000	47011000	52707000	48200	4396	45385	290531;290532	389870	389870			1	
STIFPLDGVVR	0	Unmodified	1202.6659	0.66592292	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		78.291	77.612	2	0.00030502	68143	160511_QHF_FH_JSI11i_2	76.221	34.792			1.7424	1.635	47.954	2	1	Median	2.7005	2.295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1241	1.1648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28851000	13705000	15145000	7339500	2732400	4607100	0	0	0	21511000	10973000	10538000	0	0	0	48201	410	45386	290533;290534	389871;389872	389872			2	
STIFYYVQK	1	Unmodified	1147.5914	0.59136099	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.35								1	6	2	2	1	2	66.839	57.461	2	5.2537E-17	31170	160513_QHF_FH_JSI11Kac_6	174.27	141.15			1.0256	1.1346	17.177	7	5	Median	1.1195	0.95176	24.849	2	2	Median	0.99911	1.1954	3.7042	2	0	Median	1.05	0.99098	NaN	1	1	Median	0.8996	0.97134	22.082	2	2	Median	676720000	310080000	366640000	246280000	99042000	147240000	149310000	77108000	72204000	156010000	76295000	79713000	125120000	57638000	67482000	48202	5409	45387	290535;290536;290537;290538;290539;290540;290541	389873;389874;389875;389876;389877;389878;389879;389880	389873			8	
STIGAYFLK	1	Unmodified	998.54368	0.54368251	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	62.936	62.04	2	1.8688E-08	53331	160511_QHF_FH_JSI12i_3	159.04	114.64			1.1236	1.1969	21.994	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87798	1.0245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4379	1.3983	NaN	1	1	Median	69914000	33377000	36537000	0	0	0	24831000	13067000	11764000	0	0	0	45083000	20310000	24773000	48203	3676	45388	290542;290543	389881;389882	389882			2	
STIGGQIMYLTGMVDK	1	Unmodified	1712.8477	0.84772838	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	6.29	3	7	5						6	6	6	7	2	94.539	92.07	2;3	1.3636E-159	86294	160511_QHF_FH_JSI11i_3	306.07	14.503			1.0479	1.0338	24.699	20	6	Median	1.0303	0.86876	11.767	6	2	Median	1.1993	1.3975	28.726	6	2	Median	1.1273	1.0723	15.649	6	2	Median	0.95761	1.0237	9.0342	2	0	Median	2228200000	1083200000	1145100000	416480000	214030000	202440000	548480000	238760000	309710000	911160000	446230000	464930000	352090000	184130000	167970000	48204	1069	45390	290544;290545;290546;290547;290548;290549;290550;290551;290552;290553;290554;290555;290556;290557;290558;290559;290560;290561;290562;290563;290564	389883;389884;389885;389886;389887;389888;389889;389890;389891;389892;389893;389894;389895;389896;389897;389898;389899;389900;389901;389902;389903;389904;389905;389906;389907;389908;389909	389885			27	
STIGGQIMYLTGMVDK	1	Oxidation (M)	1728.8426	0.84264301	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	84.506	84.393	2	8.0775E-05	70426	160511_QHF_FH_JSI12i_3	115.12	14.897			1.0241	1.0243	11.909	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97478	0.9416	NaN	1	1	Median	1.0758	1.1143	NaN	1	1	Median	23408000	13237000	10171000	0	0	0	0	0	0	8704700	2911400	5793400	14703000	10325000	4377600	48205	1069	45390	290565;290566	389910;389911	389911		716;717	2	
STIGGQIMYLTGMVDKR	1	Unmodified	1868.9488	0.94883941	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	2	1			84.305	76.697	3	0.00029647	41203	160513_QHF_FH_JSI9Kac_6	98.165	14.912			1.0613	0.89052	90.807	3	1	Median	2.0264	1.7073	92.047	2	1	Median	0.47767	0.57017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	357410000	160870000	196540000	266920000	94808000	172110000	90493000	66063000	24431000	0	0	0	0	0	0	48206	1069	45391	290567;290568;290569	389912;389913	389912			2	
STIGRDLIDDLK	1	Unmodified	1344.7249	0.72489436	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		61.16	61.16	3	0.0022889	54428	160511_QHF_FH_JSI11i_3	53.448	27.974			1.553	1.5108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.553	1.5108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63104000	27184000	35920000	0	0	0	0	0	0	63104000	27184000	35920000	0	0	0	48207	932	45392	290570;290571	389914;389915;389916	389915			3	
STIGVDGSVYK	1	Unmodified	1124.5714	0.57135383	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.946	35.338	2	1.2092E-09	32013	160511_QHF_FH_JSI12i_1	135.55	115.56			0.88371	0.86304	14.96	4	0	Median	0.89607	0.73575	NaN	1	0	Median	0.87153	1.0126	NaN	1	0	Median	0.98704	0.94417	NaN	1	0	Median	0.75481	0.78888	NaN	1	0	Median	577430000	299050000	278380000	107770000	50940000	56829000	149640000	73934000	75711000	155820000	75452000	80369000	164190000	98723000	65467000	48208	1785	45393	290572;290573;290574;290575	389917;389918;389919	389918			3	
STIGVEFATR	0	Unmodified	1079.5611	0.56112349	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	53.634	44.73	2	7.3393E-05	23807	160513_QHF_FH_JSI9Kac_6	102.07	60.492			0.83664	0.83712	11.131	2	1	Median	1.06	0.90567	NaN	1	1	Median	0.66032	0.77375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43514000	22414000	21100000	19463000	8295200	11167000	24052000	14119000	9933000	0	0	0	0	0	0	48209	2009;2722	45394	290576;290577;290578;290579	389920;389921;389922;389923;389924	389921			5	
STIGVMVTASHNPEEDNGVK	1	Unmodified	2083.9844	0.98443288	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	3	1	1	45.566	44.802	3	3.3648E-25	39475	160511_QHF_FH_JSI11i_3	170.06	135.15			1.187	1.1333	32.443	5	0	Median	1.187	1.0436	NaN	1	0	Median	1.0988	1.2891	18.222	2	0	Median	1.3518	1.2574	NaN	1	0	Median	0.58993	0.62335	NaN	1	0	Median	265400000	136200000	129200000	27475000	14145000	13330000	76312000	35064000	41248000	103380000	48047000	55333000	58230000	38941000	19289000	48210	690	45395	290580;290581;290582;290583;290584;290585	389925;389926;389927;389928;389929;389930;389931;389932;389933;389934;389935	389925			10	
STIIGESISR	0	Unmodified	1061.5717	0.57168818	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.09		2					4	3	1	3	2	3	2	44.573	35.596	2	9.8719E-05	21257	160513_QHF_FH_JSI11Kac_4	85.731	31.573			0.88144	0.83385	18.86	8	3	Median	0.9246	0.77656	3.069	2	0	Median	0.69953	0.82066	31.934	2	0	Median	0.82054	0.80665	11.686	2	1	Median	0.92783	1.0209	20.257	2	2	Median	466260000	209200000	257060000	28088000	13873000	14215000	25002000	14607000	10394000	48347000	27208000	21139000	364820000	153510000	211310000	48211	1818	45396	290586;290587;290588;290589;290590;290591;290592;290593;290594;290595	389936;389937;389938;389939;389940;389941;389942;389943;389944;389945;389946;389947	389942			12	
STIIISGISK	1	Unmodified	1017.607	0.60701105	5607	Q9Y426	C2CD2	C2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		14.6	0.49							2	3		1	2	2		61.089	50.11	2	0.00064198	27530	160513_QHF_FH_JSI10Kac_4	76.679	66.448			1.954	1.9037	20.065	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.954	1.9037	20.065	2	2	Median	NaN	NaN	NaN	0	0	Median	5987000	2066200	3920800	0	0	0	0	0	0	5987000	2066200	3920800	0	0	0	48212	5607	45397	290596;290597;290598;290599;290600	389948;389949;389950;389951;389952	389949			5	
STIKFQMK	2	Acetyl (K)	1023.5423	0.54230231	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		55.166	44.315	2	0.00082851	24393	160513_QHF_FH_JSI11Kac_5	93.429	81.072			0.22573	0.22362	66.278	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22573	0.22362	66.278	2	2	Median	NaN	NaN	NaN	0	0	Median	26825000	16658000	10166000	0	0	0	0	0	0	26825000	16658000	10166000	0	0	0	48213	2036	45398	290601;290602	389953;389954;389955	389955	2085		3	
STIKFQMK	2	Acetyl (K);Oxidation (M)	1039.5372	0.53721693	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	1	1			By MS/MS		14.7	0.471							1	2				3		36.234	26.382	2	0.0056206	15592	160513_QHF_FH_JSI11Kac_5	72.485	37.677			0.26085	0.25589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26085	0.25589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5676300	5060700	615690	0	0	0	0	0	0	5676300	5060700	615690	0	0	0	48214	2036	45398	290603;290604;290605	389956;389957;389958	389957	2085	1698	3	
STIMSHLFSK	1	Unmodified	1149.5852	0.58522975	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				53.448	51.865	2	0.0026467	42571	160511_QHF_FH_JSI9i_3	72.607	36.226			1.4008	1.1577	NaN	1	1	Median	1.4008	1.1577	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21215000	8498300	12717000	21215000	8498300	12717000	0	0	0	0	0	0	0	0	0	48215	3508	45399	290606	389959	389959			1	
STISTELALALR	0	Unmodified	1273.7242	0.72416608	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	78.536	77.684	2	4.5209E-05	68206	160511_QHF_FH_JSI11i_2	137.46	119.23			1.1071	1.2394	19.066	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.4313	1.7399	NaN	1	1	Median	1.269	1.2628	NaN	1	1	Median	1.1071	1.2394	NaN	1	0	Median	110190000	50227000	59958000	0	0	0	37033000	14367000	22666000	42849000	19921000	22927000	30304000	15939000	14365000	48216	5689	45400	290607;290608;290609	389960;389961;389962;389963	389962			4	
STIVAIFPSPMLYAGPTEVQWHCR	0	Unmodified	2759.3564	0.3563628	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.747	83.419	3	2.9117E-52	48494	160513_QHF_FH_JSI10Kac_6	179.42	172.84			1.3393	1.4645	14.311	4	0	Median	1.6864	1.4706	NaN	1	0	Median	1.214	1.4584	NaN	1	0	Median	1.1986	1.1415	NaN	1	0	Median	1.4775	1.587	NaN	1	0	Median	770800000	316660000	454140000	76287000	21684000	54604000	303100000	124350000	178750000	238320000	112170000	126150000	153100000	58463000	94636000	48217	678	45401	290610;290611;290612;290613	389964;389965;389966;389967;389968	389968			5	
STIVAIFPSPMLYAGPTEVQWHCR	0	Oxidation (M)	2775.3513	0.35127742	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	1	0			By matching	By MS/MS	16	0									2			1	1	88.728	79.338	3	1.6637E-18	42616	160513_QHF_FH_JSI12Kac_6	110.26	99.151			1.4353	1.4429	44.678	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1157	1.0521	NaN	1	0	Median	1.8466	1.979	NaN	1	0	Median	123510000	42142000	81363000	0	0	0	0	0	0	29013000	12925000	16088000	94493000	29217000	65275000	48218	678	45401	290614;290615	389969	389969		238	1	
STIVSIFK	1	Unmodified	893.52222	0.52221879	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				71.966	61.375	2	0.045296	31792	160513_QHF_FH_JSI9Kac_5	45.335	23.564			0.48462	0.41157	NaN	1	0	Median	0.48462	0.41157	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3678600	2105500	1573200	3678600	2105500	1573200	0	0	0	0	0	0	0	0	0	48219	4142	45402	290616	389970	389970			1	
STKPGAAPTEHK	2	Unmodified	1222.6306	0.63060004	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	4.9119	4.7129	2;3	1.019E-06	2507	160511_QHF_FH_JSI11i_3	134.98	107.23			0.85339	0.83603	21.795	8	0	Median	1.3027	1.1007	12.628	2	0	Median	0.55085	0.65952	19.101	2	0	Median	0.93066	0.89376	0.43824	2	0	Median	0.79104	0.78425	0.037726	2	0	Median	1123900000	595620000	528280000	84754000	31183000	53571000	200840000	136090000	64744000	387120000	186790000	200330000	451180000	241550000	209630000	48220	3499	45403	290617;290618;290619;290620;290621;290622;290623;290624	389971;389972;389973;389974;389975;389976;389977;389978;389979;389980;389981;389982	389971			12	
STKPVVFSPTLMLTDEEK	2	Unmodified	2021.0391	0.039094208	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.514	76.238	3	4.5617E-05	66161	160511_QHF_FH_JSI12i_3	89.049	72.17			0.77089	0.81521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77089	0.81521	NaN	1	1	Median	58864000	31930000	26934000	0	0	0	0	0	0	0	0	0	58864000	31930000	26934000	48221	1501	45404	290625	389983	389983			1	
STLAEIEDWLDK	1	Unmodified	1418.6929	0.69292553	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			100.55	100.47	2	2.9014E-05	88283	160511_QHF_FH_JSI9i_2	126.19	110.3			1.0917	0.95115	NaN	1	0	Median	1.0917	0.95115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56893000	26635000	30257000	56893000	26635000	30257000	0	0	0	0	0	0	0	0	0	48222	5161	45405	290626;290627	389984;389985;389986	389984			3	
STLAESSDHVEK	1	Unmodified	1301.6099	0.60992418	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	11.972	11.445	3	0.018832	8800	160511_QHF_FH_JSI11i_2	30.483	22.617			0.8272	0.94368	12.206	4	0	Median	1.218	1.0303	NaN	1	0	Median	0.76513	0.9325	NaN	1	0	Median	0.78071	0.77294	NaN	1	0	Median	0.87645	0.95499	NaN	1	0	Median	126950000	63502000	63445000	22053000	9109900	12943000	22873000	11102000	11770000	43959000	23507000	20452000	38063000	19783000	18280000	48223	3127	45406	290628;290629;290630;290631	389987;389988	389987			2	
STLDIVLANK	1	Unmodified	1072.6128	0.61282471	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.37	4	4	3				2	6		3	6	6	4	63.301	58.049	2	8.0695E-19	50134	160511_QHF_FH_JSI11i_2	172.21	148.24			0.99565	1.0282	51.578	18	3	Median	1.1846	1.0324	34.316	3	0	Median	0.83145	1.0173	20.65	6	1	Median	1.007	1.0241	68.029	5	1	Median	0.87956	0.94142	77.426	4	1	Median	2279500000	1119900000	1159600000	350190000	149080000	201110000	560580000	302430000	258150000	693150000	338050000	355100000	675630000	330340000	345290000	48224	1242	45407	290632;290633;290634;290635;290636;290637;290638;290639;290640;290641;290642;290643;290644;290645;290646;290647;290648;290649;290650	389989;389990;389991;389992;389993;389994;389995;389996;389997;389998;389999;390000;390001;390002;390003;390004;390005;390006;390007;390008;390009;390010;390011;390012;390013;390014;390015;390016;390017	390006			29	
STLDQVK	1	Unmodified	789.42323	0.42323303	4182	Q96NC0	ZMAT2	Zinc finger matrin-type protein 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	12.586	12.071	2	0.030187	10078	160511_QHF_FH_JSI12i_1	54.205	14.542			1.0889	0.65008	30.822	3	1	Plateau	1.2334	1.0082	NaN	1	0	Median	0.53889	0.63858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0889	1.1484	NaN	1	1	Median	678630000	393460000	285170000	127760000	63618000	64143000	409410000	256040000	153370000	0	0	0	141460000	73800000	67655000	48225	4182	45408	290651;290652;290653	390018;390019	390018			2	
STLDTDYQMTK	1	Unmodified	1301.5809	0.58093224	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.083	33.693	2	2.4205E-05	30163	160511_QHF_FH_JSI11i_1	100.88	81.607			1.0472	1.1392	15.078	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92234	1.0686	NaN	1	0	Median	1.189	1.1655	NaN	1	0	Median	0.85215	0.86905	NaN	1	0	Median	289040000	135440000	153600000	0	0	0	101000000	49410000	51587000	103990000	46397000	57590000	84052000	39630000	44422000	48226	777	45409	290654;290655;290656	390020;390021;390022	390020			3	
STLEAETR	0	Unmodified	905.44543	0.44542503	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	10.589	8.9822	2	0.00024966	7598	160511_QHF_FH_JSI12i_1	116.37	58.812			1.1196	1.0458	8.8248	6	0	Median	1.1927	0.96614	NaN	1	0	Median	0.8019	0.95788	3.2177	2	0	Median	1.1448	1.1183	0.28365	2	0	Median	1.0987	1.1398	NaN	1	0	Median	1712300000	859770000	852520000	410980000	187090000	223900000	437140000	255170000	181980000	370910000	176860000	194040000	493260000	240660000	252600000	48227	1085	45410	290657;290658;290659;290660;290661;290662	390023;390024;390025;390026	390024			4	
STLENQNWR	0	Unmodified	1146.5418	0.54178503	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	24.336	23.468	2	1.0814E-05	19608	160511_QHF_FH_JSI12i_2	119.41	73.391			0.94208	1.0631	17.491	4	0	Median	1.6003	1.3486	NaN	1	0	Median	0.96239	1.1746	NaN	1	0	Median	0.92219	0.92966	NaN	1	0	Median	0.85687	0.96215	NaN	1	0	Median	224060000	112810000	111250000	40665000	15502000	25163000	39268000	19123000	20145000	74789000	39036000	35752000	69340000	39153000	30187000	48228	2594	45411	290663;290664;290665;290666	390027;390028;390029;390030;390031	390028			5	
STLEPVEK	1	Unmodified	901.47566	0.47566253	954;1108	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	4.97	4	3	4		2	3				3	5	4	4	21.091	18.155	2	0.00023757	15405	160511_QHF_FH_JSI11i_1	117.4	58.418			1.006	1.0522	9.1671	15	0	Median	1.2015	1.0344	5.4015	3	0	Plateau	0.88503	1.0388	6.4401	5	0	Median	1.0353	1.0194	12.526	4	0	Median	0.98785	1.0358	10.038	3	0	Plateau	19778000000	10255000000	9522700000	4409800000	2121700000	2288200000	5728900000	3186400000	2542500000	5195500000	2749800000	2445700000	4443700000	2197300000	2246400000	48229	954;1108	45412	290667;290668;290669;290670;290671;290672;290673;290674;290675;290676;290677;290678;290679;290680;290681;290682	390032;390033;390034;390035;390036;390037;390038;390039;390040;390041;390042;390043;390044;390045;390046;390047;390048;390049;390050;390051;390052;390053;390054;390055	390035			24	
STLEPVEKALR	1	Acetyl (K)	1283.7085	0.70851601	954;1108	P0DMV9;P0DMV8;P17066;P48741	HSPA1B;HSPA1A;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.484						3	5				4	1	3	66.035	55.931	2	0.00011621	29970	160513_QHF_FH_JSI10Kac_4	96.342	28.779			0.63787	0.72947	134.54	6	2	Median	NaN	NaN	NaN	0	0	Median	0.74426	0.88329	139.97	4	1	Median	0.081389	0.080402	NaN	1	1	Median	0.60333	0.65624	NaN	1	0	Median	68845000	45749000	23096000	0	0	0	58706000	37132000	21574000	6590200	6107000	483240	3548600	2510100	1038500	48230	954;1108	45413	290683;290684;290685;290686;290687;290688;290689;290690	390056;390057;390058;390059;390060;390061;390062;390063	390057	722		8	
STLFVPR	0	Unmodified	818.46504	0.46503826	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	39.206	38.248	2	0.0099712	33603	160511_QHF_FH_JSI10i_2	76.847	58.041			0.86671	0.95667	11.446	4	0	Median	1.3485	1.1467	NaN	1	0	Median	0.78883	0.9586	NaN	1	0	Median	0.95228	0.95475	NaN	1	0	Median	0.78435	0.87263	NaN	1	0	Median	350370000	169670000	180700000	66805000	22271000	44534000	90302000	47089000	43213000	103880000	47702000	56179000	89380000	52604000	36776000	48231	1022	45414	290691;290692;290693;290694	390064;390065;390066;390067;390068	390068			5	
STLGPKGMDK	2	Acetyl (K);Oxidation (M)	1090.5329	0.53285983	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	1	1			By MS/MS	By MS/MS	13	0						2						1	1	22.308	14.816	2	0.011099	9661	160513_QHF_FH_JSI11Kac_3	64.04	8.4908			0.11509	0.10897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11509	0.10897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2423800	2200800	222960	0	0	0	0	0	0	2423800	2200800	222960	0	0	0	48232	2090	45415	290695;290696	390069;390070	390069	2172;2175	1750	2	
STLGPKGMDK	2	Acetyl (K)	1074.5379	0.53794521	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	36.092	27.587	2	0.012929	15761	160513_QHF_FH_JSI12Kac_3	57.59	7.5493			1.2473	1.3591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2473	1.3591	NaN	1	0	Median	3992700	1869200	2123400	0	0	0	0	0	0	0	0	0	3992700	1869200	2123400	48233	2090	45415	290697	390071	390071	2172;2175		1	
STLHNWMSEFK	1	Unmodified	1378.634	0.63397086	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							1	4	2	4	59.07	58.242	2;3	5.597E-13	48011	160511_QHF_FH_JSI9i_3	145.89	130.22			0.99002	0.92967	32.56	8	1	Median	1.044	0.85926	NaN	1	0	Median	0.76031	0.8652	36.809	3	0	Median	1.2075	1.1329	6.4478	2	0	Median	0.71648	0.71139	48.01	2	1	Median	869600000	443800000	425800000	40406000	20405000	20001000	268440000	177210000	91233000	353570000	122150000	231420000	207190000	124050000	83139000	48234	403	45416	290698;290699;290700;290701;290702;290703;290704;290705;290706;290707;290708	390072;390073;390074;390075;390076;390077;390078;390079;390080;390081;390082;390083;390084;390085	390080			14	
STLIGEDVNPLIK	1	Unmodified	1397.7766	0.77659558	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	73.257	72.449	2	0.00020258	62583	160511_QHF_FH_JSI12i_2	104.52	78.009			0.44499	0.45215	9.6638	3	3	Plateau	0.50982	0.45215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44154	0.41487	NaN	1	1	Median	0.48114	0.50314	NaN	1	1	Median	57475000	35842000	21632000	15857000	9791300	6065900	0	0	0	24740000	16400000	8340300	16878000	9651600	7226200	48235	1176	45417	290709;290710;290711	390086;390087;390088	390087			3	
STLINSLFLTDLYPER	0	Unmodified	1880.9884	0.98837927	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.12	6.88		3	1						4	2	3	2	1	98.312	94.065	2	5.2005E-159	89536	160511_QHF_FH_JSI9i_2	295.78	237.08			0.90852	1.0095	8.4789	8	1	Median	1.1692	0.99731	12.6	2	0	Median	0.86743	1.0452	4.2771	3	1	Median	1.0166	1.0112	15.64	2	0	Median	0.86988	0.93574	NaN	1	0	Median	1060500000	557390000	503150000	269450000	119340000	150100000	444920000	256620000	188300000	282690000	146430000	136260000	63488000	35000000	28487000	48236	2603	45418	290712;290713;290714;290715;290716;290717;290718;290719	390089;390090;390091;390092;390093;390094;390095;390096	390091			8	
STLINSLFLTDLYSPEYPGPSHR	0	Unmodified	2606.3017	0.30166791	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	2	2	1		95.723	90.882	3	2.3692E-61	48771	160513_QHF_FH_JSI10Kac_6	202.17	183.13			1.2681	1.2201	7.8636	5	0	Median	1.3394	1.1211	11.959	2	0	Median	1.0005	1.1796	6.4119	2	0	Median	1.3078	1.2314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1311600000	615830000	695740000	378480000	172440000	206030000	720170000	346820000	373350000	212920000	96563000	116360000	0	0	0	48237	2725	45419	290720;290721;290722;290723;290724	390097;390098;390099;390100	390100			4	
STLINTLFK	1	Unmodified	1035.5964	0.59644637	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		2	3						2	2	2	1	2	76.711	73.414	2	8.419E-13	61495	160511_QHF_FH_JSI9i_3	169.12	139.05			1.3162	0.96695	29.713	7	1	Linear	0.97142	0.80867	48.049	2	0	Median	0.95071	1.142	4.949	2	0	Median	0.85115	0.84155	NaN	1	0	Median	0.73101	0.76735	32.697	2	1	Median	1826900000	859130000	967740000	439370000	202730000	236630000	449250000	223160000	226090000	15740000	7203100	8537100	922510000	426030000	496480000	48238	5298	45420	290725;290726;290727;290728;290729;290730;290731	390101;390102;390103;390104;390105;390106;390107;390108;390109	390104			9	
STLIPILHQK	1	Unmodified	1148.6917	0.69174374	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.69	3.58		4	8						1	3	3	3	4	51.824	50.936	2;3	1.1141E-07	42807	160511_QHF_FH_JSI10i_3	131.06	118.44			1.0617	1.1035	16.333	12	0	Median	1.4251	1.15	13.445	3	0	Median	0.99075	1.1334	19.293	3	0	Median	1.1418	1.0767	16.039	3	0	Median	1.1038	1.131	20.819	3	0	Plateau	1018600000	472650000	545960000	138780000	59858000	78919000	219130000	106190000	112940000	273340000	129440000	143900000	387360000	177160000	210200000	48239	2789	45421	290732;290733;290734;290735;290736;290737;290738;290739;290740;290741;290742;290743;290744	390110;390111;390112;390113;390114;390115;390116;390117;390118;390119;390120;390121;390122;390123;390124;390125;390126;390127;390128;390129;390130;390131;390132	390116			23	
STLKPQPAPQAGPIPVAPIGTLK	2	Unmodified	2280.3206	0.32055286	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	70.844	70.695	3	0.00018358	63032	160511_QHF_FH_JSI11i_3	51.398	50.794			0.99322	0.94268	20.669	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1795	1.091	NaN	1	0	Median	0.83639	0.8145	NaN	1	0	Median	76545000	30986000	45559000	0	0	0	0	0	0	43838000	17604000	26234000	32707000	13381000	19326000	48240	3927	45422	290745;290746	390133	390133			1	
STLLDMSSIFHQK	1	Unmodified	1505.7548	0.75481428	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.731	82.523	3	0.0016439	71676	160511_QHF_FH_JSI12i_3	44.571	39.492			1.5619	1.6302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5619	1.6302	NaN	1	0	Median	57932000	21710000	36222000	0	0	0	0	0	0	0	0	0	57932000	21710000	36222000	48241	591	45423	290747	390134	390134			1	
STLLFGQR	0	Unmodified	920.50797	0.50796571	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.49		2						1	3	3	1	1	1	48.892	42.017	2	0.00021208	37093	160511_QHF_FH_JSI10i_2	119.57	102.64			0.85476	0.875	67.419	6	1	Median	0.39937	0.939	68.904	3	0	Plateau	0.1778	0.21813	NaN	1	0	Median	0.9456	0.89833	NaN	1	0	Median	0.77266	0.85228	NaN	1	1	Median	204030000	146400000	57625000	108020000	77195000	30823000	82989000	62605000	20384000	9774600	4762800	5011800	3246000	1840100	1406000	48242	1400	45424	290748;290749;290750;290751;290752;290753	390135;390136;390137;390138;390139;390140;390141	390139			7	
STLLGVLTHGELDNGR	0	Unmodified	1680.8795	0.87949752	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			77.213	75.795	2;3	1.3899E-05	62434	160511_QHF_FH_JSI9i_3	86.313	71.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48243	103	45425	290754;290755;290756	390142;390143;390144	390144			3	
STLLLLLTGK	1	Unmodified	1057.6747	0.67469669	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.21		6	4	1				1	4	4	3	5	4	93.3	90.265	2	6.4956E-19	82435	160511_QHF_FH_JSI12i_3	174.41	50.327			0.88903	0.99541	31.696	15	5	Median	1.3188	1.1513	19.337	3	0	Plateau	0.82758	0.99541	5.0609	3	0	Median	1.2453	1.1538	47.452	5	3	Median	0.87212	0.9103	37.05	4	2	Median	10423000000	5560000000	4862800000	2727400000	1065200000	1662200000	2568900000	1366800000	1202100000	2585100000	1592600000	992440000	2541400000	1535300000	1006100000	48244	3634	45426	290757;290758;290759;290760;290761;290762;290763;290764;290765;290766;290767;290768;290769;290770;290771;290772	390145;390146;390147;390148;390149;390150;390151;390152;390153;390154;390155;390156;390157;390158;390159;390160;390161;390162;390163;390164;390165;390166;390167;390168;390169;390170;390171;390172;390173;390174;390175;390176;390177	390173			33	
STLLSNLAGVYSEVAAYEFTTLTTVPGVIR	0	Unmodified	3171.6703	0.67034618	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.84	96.123	3	4.9319E-29	56839	160513_QHF_FH_JSI10Kac_6	126.88	115.78			1.1844	1.3925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1844	1.3925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103170000	48823000	54346000	0	0	0	103170000	48823000	54346000	0	0	0	0	0	0	48245	5505	45427	290773	390178	390178			1	
STLMDTLFNTK	1	Unmodified	1269.6275	0.6274885	2498	Q14141;Q9NVA2	SEPT6;SEPT11	Septin-6;Septin-11	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	83.317	82.607	2	1.8692E-29	73446	160511_QHF_FH_JSI10i_2	185.14	134.53			0.95016	1.004	11.364	8	3	Median	1.214	1.0335	15.451	2	1	Median	0.82507	0.97725	15.272	2	1	Median	0.9972	0.97254	16.103	2	1	Median	0.95016	1.004	11.207	2	0	Median	739290000	351370000	387920000	115900000	47470000	68435000	142620000	77221000	65400000	231430000	103880000	127550000	249340000	122810000	126530000	48246	2498	45428	290774;290775;290776;290777;290778;290779;290780;290781;290782	390179;390180;390181;390182;390183;390184;390185;390186;390187;390188;390189;390190;390191;390192;390193;390194	390192			16	
STLMGHMLYLLGNINK	1	Oxidation (M)	1819.9325	0.93246107	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		78.555	71.145	3	9.6115E-05	38063	160513_QHF_FH_JSI11Kac_6	77.222	59.734			9.3364	1.4536	111.56	4	3	Linear	1.369	1.173	NaN	1	1	Median	3.7301	4.4747	144.17	2	2	Median	1.3555	1.3088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	665080000	124660000	540420000	54510000	21312000	33198000	587900000	96170000	491730000	22668000	7182100	15486000	0	0	0	48247	5610	45429	290783;290784;290785;290786	390195;390196;390197;390198	390195		2710;2711	4	
STLMGHMLYLLGNINK	1	Unmodified	1803.9375	0.93754644	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	90.173	81.875	2;3	6.8491E-167	47138	160513_QHF_FH_JSI10Kac_6	327.1	282.49			0.86284	0.90809	47.644	8	5	Median	0.81746	0.69593	44.936	2	0	Median	1.3043	1.5407	46.968	2	2	Median	0.61096	0.58118	28.49	2	1	Median	0.86284	0.90809	5.6954	2	2	Median	2641000000	1382900000	1258000000	709220000	318110000	391100000	1016600000	485090000	531480000	494780000	323480000	171310000	420390000	256270000	164120000	48248	5610	45429	290787;290788;290789;290790;290791;290792;290793;290794	390199;390200;390201;390202;390203;390204;390205;390206;390207	390207			9	
STLMGHMLYLLGNINK	1	2 Oxidation (M)	1835.9274	0.92737569	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	2	0	By MS/MS				16	0									1	1				72.219	63.621	3	0.0038692	33817	160513_QHF_FH_JSI9Kac_6	55.173	38.095			3.7382	3.1633	NaN	1	1	Median	3.7382	3.1633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60421000	9572300	50848000	60421000	9572300	50848000	0	0	0	0	0	0	0	0	0	48249	5610	45429	290795	390208	390208		2710;2711	1	
STLNEIYFGK	1	Unmodified	1170.5921	0.59208927	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.43	4	2	2				3	4		3	4	4	4	61.914	56.385	2	3.3185E-08	30454	160513_QHF_FH_JSI11Kac_5	134.25	104.44			0.93216	1.0406	123.69	15	6	Median	0.36571	0.29805	129.2	3	1	Plateau	0.078019	0.090354	122.94	4	2	Linear	1.1844	1.1662	141.97	4	1	Median	1.2071	1.3348	153.85	4	2	Median	5376200000	4475000000	901210000	650030000	570050000	79987000	1400600000	1284900000	115660000	1845100000	1462900000	382190000	1480500000	1157100000	323370000	48250	1607	45430	290796;290797;290798;290799;290800;290801;290802;290803;290804;290805;290806;290807;290808;290809;290810	390209;390210;390211;390212;390213;390214;390215;390216;390217;390218;390219;390220;390221;390222;390223;390224;390225;390226;390227;390228	390224			20	
STLNEIYFGKTK	2	Acetyl (K)	1441.7453	0.74529545	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.78	62.014	2	1.4686E-06	33132	160513_QHF_FH_JSI11Kac_5	119.39	87.964			0.24527	0.24081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24527	0.24081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6024600	5234600	790050	0	0	0	0	0	0	6024600	5234600	790050	0	0	0	48251	1607	45431	290811	390229	390229	1631		1	
STLNPNAK	1	Unmodified	843.44503	0.4450311	3801;4302	Q99700;Q8WWM7	ATXN2;ATXN2L	Ataxin-2;Ataxin-2-like protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.56	4	4				3	1			2	4	2	4	9.703	6.2355	2	0.00061824	5992	160511_QHF_FH_JSI11i_1	102.3	82.374			1.1453	1.1045	17.8	9	1	Median	1.5723	1.3202	0.65905	2	1	Median	0.78835	0.92018	1.6432	2	0	Median	1.1502	1.109	0.56903	2	0	Median	0.82079	0.8807	22.145	3	0	Median	1334000000	618900000	715060000	329470000	115130000	214340000	324940000	180160000	144780000	337130000	158620000	178520000	342420000	164990000	177430000	48252	4302;3801	45432	290812;290813;290814;290815;290816;290817;290818;290819;290820;290821;290822;290823	390230;390231;390232;390233;390234;390235;390236;390237;390238;390239;390240;390241;390242	390230			13	
STLNPQWNESFTFK	1	Unmodified	1697.8049	0.80493559	1112	P17252	PRKCA	Protein kinase C alpha type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	75.15	74.242	2	3.4574E-06	65961	160511_QHF_FH_JSI10i_2	130.1	118.04			0.68907	0.70891	22.053	6	6	Median	0.71116	0.61301	NaN	1	1	Median	0.7674	0.9455	27.639	2	2	Median	0.7146	0.7074	NaN	1	1	Median	0.64164	0.69002	4.1215	2	2	Median	202330000	126860000	75471000	27078000	15454000	11623000	68247000	42293000	25954000	47821000	28659000	19162000	59189000	40456000	18733000	48253	1112	45433	290824;290825;290826;290827;290828;290829	390243;390244;390245;390246;390247;390248	390247			6	
STLPDADRER	0	Unmodified	1158.5629	0.56291441	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.31	3	7	4				1	3		3	4	5	6	12.885	10.509	2;3	1.4506E-25	9218	160511_QHF_FH_JSI10i_2	196.32	170.74			0.99331	1.0802	55.195	18	0	Median	0.51259	0.44679	4.3808	3	0	Median	0.47946	0.59367	41.291	4	0	Median	1.8432	1.692	22.807	5	0	Median	0.99331	1.0802	9.1075	6	0	Median	2237700000	1111600000	1126100000	372630000	243660000	128970000	522520000	326140000	196370000	712830000	234630000	478210000	629710000	307160000	322550000	48254	361	45434	290830;290831;290832;290833;290834;290835;290836;290837;290838;290839;290840;290841;290842;290843;290844;290845;290846;290847	390249;390250;390251;390252;390253;390254;390255;390256;390257;390258;390259;390260;390261;390262;390263;390264;390265;390266;390267;390268;390269;390270	390265			22	
STLPGSTTSNK	1	Unmodified	1091.5459	0.54586736	5464	Q9UPQ9	TNRC6B	Trinucleotide repeat-containing gene 6B protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				11.868	11.019	2	9.6254E-05	8516	160511_QHF_FH_JSI9i_1	93.649	77.446			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48255	5464	45435	290848	390271	390271			1	
STLQTLPEIVAK	1	Unmodified	1298.7446	0.74456717	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	2	3	2	68.022	65.122	2	2.7955E-11	59591	160511_QHF_FH_JSI12i_1	152.54	129.47			0.853	0.83272	18.171	9	4	Median	0.96518	0.80715	18.031	2	1	Median	0.5676	0.68343	5.9545	2	1	Median	0.85941	0.83272	25.851	3	1	Median	0.87275	0.92883	0.64884	2	1	Median	889100000	495200000	393900000	199200000	110010000	89191000	229740000	132600000	97137000	301580000	174150000	127430000	158580000	78438000	80143000	48256	655	45436	290849;290850;290851;290852;290853;290854;290855;290856;290857	390272;390273;390274;390275;390276;390277;390278;390279;390280;390281;390282;390283	390274			12	
STLQTMESDIYTEVR	0	Unmodified	1771.8298	0.82982971	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	75.053	74.417	2	4.6355E-98	65553	160511_QHF_FH_JSI9i_2	262.43	246.05			1.1825	1.1948	7.6607	8	0	Median	1.4208	1.177	3.754	2	0	Median	0.85126	1.0491	0.46956	2	0	Median	1.2403	1.2181	2.1419	2	0	Median	1.1739	1.2457	6.4852	2	0	Median	1547200000	714990000	832180000	324750000	129560000	195180000	457790000	243540000	214250000	413700000	178940000	234760000	350930000	162940000	187990000	48257	2252	45437	290858;290859;290860;290861;290862;290863;290864;290865;290866	390284;390285;390286;390287;390288;390289;390290;390291;390292;390293;390294;390295;390296;390297;390298;390299	390295			16	
STLQTMESDIYTEVR	0	Oxidation (M)	1787.8247	0.82474434	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				52.669	51.469	2	5.5102E-07	45764	160511_QHF_FH_JSI9i_1	89.43	77.162			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48258	2252	45437	290867	390300	390300		1865	1	
STLSNQLLGR	0	Unmodified	1087.5986	0.59857163	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.1	42.1	2	0.012735	37154	160511_QHF_FH_JSI11i_3	44.82	16.124			1.8328	1.7246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8328	1.7246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74875000	24593000	50282000	0	0	0	0	0	0	74875000	24593000	50282000	0	0	0	48259	549	45438	290868	390301;390302	390302			2	
STLSQTVPSK	1	Unmodified	1046.5608	0.56078914	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.634	20.143	2	0.0033239	17619	160511_QHF_FH_JSI12i_1	70.056	43.673			0.2774	0.28285	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2774	0.28285	NaN	1	1	Median	32640000	24306000	8334400	0	0	0	0	0	0	0	0	0	32640000	24306000	8334400	48260	4929	45439	290869	390303	390303			1	
STLTDSLVCK	1	Unmodified	1122.5591	0.55907458	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.02	5	3				3	3			2	4	4	4	47.261	42.253	2	1.0229E-25	38351	160511_QHF_FH_JSI12i_1	191.85	162.7			0.928	1.0719	30.823	13	3	Median	1.0056	0.84619	37.755	2	1	Median	1.0072	1.1932	31.235	3	0	Median	0.76272	0.74768	10.132	4	1	Median	1.1256	1.2219	8.7702	4	1	Median	8807700000	4628500000	4179200000	1014800000	455360000	559430000	2029100000	1140500000	888620000	2799600000	1552900000	1246700000	2964200000	1479800000	1484400000	48261	1033	45440	290870;290871;290872;290873;290874;290875;290876;290877;290878;290879;290880;290881;290882;290883	390304;390305;390306;390307;390308;390309;390310;390311;390312;390313;390314;390315;390316;390317;390318;390319;390320;390321;390322;390323;390324	390309			21	
STLVLHDLLK	1	Unmodified	1137.6758	0.67575932	2335	Q12979	ABR	Active breakpoint cluster region-related protein	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	62.608	62.087	3	0.0016091	53912	160511_QHF_FH_JSI12i_2	55.721	36.976			2.3487	2.2778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3487	2.2778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14329000	4970000	9359000	0	0	0	0	0	0	14329000	4970000	9359000	0	0	0	48262	2335	45441	290884;290885	390325;390326	390325			2	
STLYVSPHPDAFPSLR	0	Acetyl (Protein N-term)	1827.9155	0.91554867	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.78		4	3					3		3	3	3	1	80.802	77.076	2	3.5061E-59	70773	160511_QHF_FH_JSI10i_2	271.01	225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48263	1283	45442	290886;290887;290888;290889;290890;290891;290892;290893;290894;290895	390327;390328;390329;390330;390331;390332;390333;390334;390335;390336;390337;390338;390339;390340	390339			14	
STMDFSTHQAVPDPK	1	Unmodified	1659.7563	0.75627084	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.348	40.882	3	0.059446	35053	160511_QHF_FH_JSI11i_2	17.281	5.6677			1.0795	1.0751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0795	1.0751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51798000	27885000	23913000	0	0	0	0	0	0	51798000	27885000	23913000	0	0	0	48264	681	45443	290896	390341	390341			1	
STMDNPTTTQYASLMHSFILK	1	Unmodified	2385.1345	0.13446793	4891	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	91.492	88.442	3	2.4219E-125	43006	160513_QHF_FH_JSI11Kac_6	245.66	230.24			1.0019	1.0568	10.524	12	0	Median	1.2677	1.0741	4.7331	3	0	Median	0.85152	1.0374	9.3945	3	0	Plateau	0.96916	0.9325	12.873	3	0	Median	0.93582	1.1086	11.129	3	0	Plateau	3034500000	1566800000	1467600000	607110000	275410000	331700000	930410000	505760000	424640000	910830000	482140000	428690000	586110000	303510000	282590000	48265	4891	45444	290897;290898;290899;290900;290901;290902;290903;290904;290905;290906;290907;290908	390342;390343;390344;390345;390346;390347;390348;390349;390350;390351;390352;390353;390354;390355;390356;390357;390358;390359;390360;390361;390362;390363;390364;390365;390366;390367;390368;390369;390370;390371;390372;390373;390374;390375	390351			34	
STMDNPTTTQYASLMHSFILK	1	Oxidation (M)	2401.1294	0.12938255	4891	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	12.5	6.06		1							3	1		1	2	85.955	78.884	3	1.2805E-37	41415	160513_QHF_FH_JSI9Kac_6	171.39	159.09			0.97776	0.93135	15.739	4	1	Median	0.98967	0.8556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87854	0.80768	NaN	1	0	Median	0.9862	1.0745	8.2308	2	1	Median	261560000	136570000	125000000	114650000	61921000	52733000	0	0	0	59385000	31008000	28377000	87525000	43637000	43888000	48266	4891	45444	290909;290910;290911;290912	390376;390377;390378;390379	390378		2549	4	
STMGKPQR	1	Acetyl (K);Oxidation (M)	961.46511	0.46511462	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	1	0	1	1			By MS/MS		13.5	0.5						1	1					2		7.8082	0.34405	2	0.046432	2933	160513_QHF_FH_JSI11Kac_3	51.854	38.183			0.052364	0.050425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.052364	0.050425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5362200	5076400	285760	0	0	0	0	0	0	5362200	5076400	285760	0	0	0	48267	2036	45445	290913;290914	390380;390381	390380	2081	1695	2	
STMGKPQR	1	Unmodified	903.45964	0.45963531	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By matching			2.75	0.433		1	3							3	1			5.0501	4.5582	2;3	0.0064251	2600	160511_QHF_FH_JSI9i_3	96.19	74.263			0.99246	0.78597	18.512	3	0	Median	1.1057	0.88534	16.836	2	0	Median	0.591	0.69259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1627900000	877630000	750270000	1366500000	736180000	630370000	261350000	141450000	119900000	0	0	0	0	0	0	48268	2036	45445	290915;290916;290917;290918	390382;390383;390384	390382			3	
STMKPVQK	2	Unmodified	917.50044	0.50043749	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		6	8						4	5	5	5	3	6.3792	4.4811	2;3	0.00074782	3648	160511_QHF_FH_JSI11i_3	128.69	102.95			0.78045	0.89448	24.125	18	0	Median	1.4419	1.1547	28.398	5	0	Median	0.63186	0.73341	11.157	5	0	Median	1.0385	1.0346	20.521	5	0	Median	0.70811	0.72551	14.784	3	0	Plateau	19128000000	9990900000	9137400000	2428400000	1025900000	1402500000	3140800000	2005200000	1135600000	5717600000	2331400000	3386200000	7841500000	4628300000	3213200000	48269	982	45446	290919;290920;290921;290922;290923;290924;290925;290926;290927;290928;290929;290930;290931;290932;290933;290934;290935;290936	390385;390386;390387;390388;390389;390390;390391;390392;390393;390394;390395;390396;390397;390398;390399;390400;390401;390402;390403;390404;390405;390406;390407;390408;390409;390410;390411;390412;390413;390414;390415;390416	390385			32	
STMKPVQK	2	Oxidation (M)	933.49535	0.49535211	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	6	5.2			3					1		2	1		1	4.276	1.71	2;3	0.039894	1286	160513_QHF_FH_JSI9Kac_5	32.812	16.301			1.0997	1.0602	12.149	4	0	Median	1.3934	1.1503	17.955	2	0	Median	0.97601	1.1093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0099	1.006	NaN	1	0	Median	889840000	458720000	431120000	301980000	121920000	180060000	483780000	285260000	198520000	0	0	0	104070000	51539000	52536000	48270	982	45446	290937;290938;290939;290940	390417;390418;390419;390420	390419			4	
STMKPVQK	2	Acetyl (K);Oxidation (M)	975.50592	0.5059168	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	1	1		By MS/MS	By MS/MS		13	0						2					1	1		13.413	6.0276	2	0.027764	5624	160513_QHF_FH_JSI11Kac_3	47.082	34.726			0.56269	0.59291	121.15	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2105	1.3965	NaN	1	0	Median	0.26155	0.25173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8511500	6139400	2372100	0	0	0	1351700	601900	749800	7159800	5537500	1622300	0	0	0	48271	982	45446	290941;290942	390421	390421	770		1	
STMKPVQK	2	Acetyl (K)	959.511	0.51100218	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	22.443	15.106	2	0.017384	9833	160513_QHF_FH_JSI11Kac_3	64.265	53.85			0.53643	0.5791	87.498	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94156	1.0751	NaN	1	0	Median	0.30561	0.31193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9370000	6491400	2878600	0	0	0	2330000	1013300	1316700	5996500	4434600	1561900	1043600	1043600	0	48272	982	45446	290943;290944;290945	390422;390423	390422	770		2	
STMLYNK	1	Unmodified	855.41604	0.41603916	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.75	5.36	1	2					1				2	2		20.395	18.123	2	0.023455	15559	160511_QHF_FH_JSI10i_1	58.687	24.834			1.4554	1.4643	75.815	4	1	Median	NaN	NaN	NaN	0	0	Median	1.5475	1.8749	128.97	2	1	Median	1.4554	1.4643	0.25656	2	0	Median	NaN	NaN	NaN	0	0	Median	231560000	98363000	133190000	0	0	0	98755000	46461000	52294000	132800000	51902000	80900000	0	0	0	48273	532	45447	290946;290947;290948;290949	390424;390425;390426	390424			3	
STMNFKIGGVTER	1	Acetyl (K);Oxidation (M)	1496.7293	0.72932781	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	56.826	46.147	2	0.0017931	25367	160513_QHF_FH_JSI11Kac_5	67.456	57.452			1.0399	1.1302	17.355	4	0	Median	NaN	NaN	NaN	0	0	Median	1.098	1.2457	23.245	2	0	Median	1.0057	0.99148	NaN	1	0	Median	1.0753	1.2087	NaN	1	0	Median	12093000	5955200	6137700	0	0	0	4560600	2196700	2363900	3135000	1653200	1481900	4397300	2105300	2291900	48274	887	45448	290950;290951;290952;290953	390427;390428;390429;390430	390428	625	451	4	
STMNFKIGGVTER	1	Acetyl (K)	1480.7344	0.73441319	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	15	0								3			1	1	1	70.338	59.638	2	0.0003892	31998	160513_QHF_FH_JSI11Kac_5	88.021	73.601			0.84182	0.8343	9.5807	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72048	0.84874	NaN	1	0	Median	0.84182	0.83377	NaN	1	0	Median	0.92895	0.99235	NaN	1	0	Median	10403000	5924300	4478900	0	0	0	4078800	2491300	1587500	4419200	2564700	1854400	1905300	868300	1037000	48275	887	45448	290954;290955;290956	390431	390431	625		1	
STMPTSLPNLAK	1	Unmodified	1258.6591	0.65912298	2219	Q04721	NOTCH2	Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	57.765	57.239	2	0.00010784	51590	160511_QHF_FH_JSI10i_1	88.392	69.121			0.66617	0.73362	16.488	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57274	0.65288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77486	0.82433	NaN	1	1	Median	65115000	37724000	27391000	0	0	0	25710000	13494000	12216000	0	0	0	39405000	24230000	15175000	48276	2219	45449	290957;290958	390432;390433	390433			2	
STNEAMEWMNNK	1	Unmodified	1453.5966	0.59659908	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	2	2	48.589	47.669	2	1.2395E-194	41133	160511_QHF_FH_JSI11i_2	329.49	322.96			0.92021	0.98379	10.987	5	0	Median	1.0861	0.9215	NaN	1	0	Median	0.81916	1.008	NaN	1	0	Median	0.83222	0.83644	NaN	1	0	Median	0.9662	1.0521	9.4959	2	0	Median	1059800000	549510000	510300000	164700000	74813000	89883000	133050000	71527000	61519000	199270000	116590000	82676000	562800000	286580000	276220000	48277	1417	45450	290959;290960;290961;290962;290963;290964	390434;390435;390436;390437;390438;390439;390440;390441;390442;390443;390444;390445;390446;390447	390444			14	
STNENANTPAAR	0	Acetyl (Protein N-term)	1286.5851	0.58510641	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.13	4			3	1					1	2	2	3	13.497	9.5869	2	1.5477E-06	8974	160511_QHF_FH_JSI12i_1	175.93	167.07			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48278	1766	45451	290965;290966;290967;290968;290969;290970;290971;290972	390448;390449;390450;390451;390452;390453;390454;390455	390449			8	
STNGDDHQVK	1	Acetyl (Protein N-term)	1141.5	0.4999798	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	1	0	0				By MS/MS	12	0					1								1	6.2468	-0.91053	2	0.015628	1982	160513_QHF_FH_JSI12Kac_2	40.002	35.645			0.84138	0.94622	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84138	0.94622	NaN	1	0	Median	1171600	669580	501980	0	0	0	0	0	0	0	0	0	1171600	669580	501980	48279	942	45452	290973	390456	390456			1	
STNGDTFLGGEDFDQALLR	0	Unmodified	2054.9545	0.95451296	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	18	6								7	5	4	8	89.38	88.89	2;3	0	80610	160511_QHF_FH_JSI11i_1	473.31	416.95			1.0425	1.0295	25.654	20	7	Median	1.2457	1.0525	12.219	6	2	Median	0.8768	1.0222	5.3834	5	1	Linear	1.0322	1.0018	2.3909	3	0	Median	1.0425	1.1068	47.611	6	4	Median	4336900000	2161600000	2175300000	921370000	412020000	509350000	1297500000	704620000	592890000	935410000	479770000	455640000	1182600000	565220000	617390000	48280	1480	45453	290974;290975;290976;290977;290978;290979;290980;290981;290982;290983;290984;290985;290986;290987;290988;290989;290990;290991;290992;290993;290994;290995;290996;290997	390457;390458;390459;390460;390461;390462;390463;390464;390465;390466;390467;390468;390469;390470;390471;390472;390473;390474;390475;390476;390477;390478;390479;390480;390481;390482;390483;390484;390485;390486;390487;390488;390489;390490;390491;390492;390493;390494;390495;390496;390497;390498;390499;390500;390501;390502;390503	390458			47	
STNLDASENTGNK	1	Unmodified	1349.6059	0.60590143	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.116	10.682	2	2.8089E-17	8503	160511_QHF_FH_JSI10i_1	141.71	116.94			0.91698	0.96341	46.846	3	1	Plateau	0.95283	0.78696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0057	1.9229	NaN	1	1	Median	0.90838	0.96341	NaN	1	0	Median	121390000	57613000	63781000	43997000	25539000	18459000	0	0	0	32272000	9753700	22518000	45125000	22321000	22804000	48281	3819	45454	290998;290999;291000;291001	390504;390505;390506;390507;390508;390509	390507			6	
STNPGISIGDVAK	1	Unmodified	1257.6565	0.65648044	278	O15347	HMGB3	High mobility group protein B3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	5.96	4	2	1			4	3			2	6	4	2	52.109	47.104	2	1.6039E-15	42338	160511_QHF_FH_JSI10i_1	163.78	136.04			0.9228	0.98422	21.022	11	2	Median	1.2382	1.0126	NaN	1	0	Median	0.79626	0.93257	20.389	5	1	Median	1.1051	1.0761	13.875	3	1	Median	0.96964	1.0551	9.8365	2	0	Median	2845900000	1447100000	1398800000	694750000	331810000	362950000	732640000	419120000	313520000	742820000	361930000	380880000	675720000	334290000	341430000	48282	278	45455	291002;291003;291004;291005;291006;291007;291008;291009;291010;291011;291012;291013;291014;291015	390510;390511;390512;390513;390514;390515;390516;390517;390518;390519;390520;390521;390522;390523;390524;390525;390526;390527;390528;390529;390530;390531;390532;390533;390534;390535;390536	390523			26	
STNSHLGTSNMK	1	Unmodified	1275.5877	0.58774895	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	8.0563	8.1051	2	0.00018099	5836	160511_QHF_FH_JSI11i_3	97.734	77.947			1.9855	1.9101	49.996	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9871	2.7202	NaN	1	1	Median	1.3197	1.3413	NaN	1	1	Median	61427000	13751000	47676000	0	0	0	0	0	0	32607000	3650800	28957000	28819000	10100000	18719000	48283	1430	45456	291016;291017	390537;390538	390537			2	
STNSSDVSAK	1	Unmodified	994.45672	0.456718	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.0769	4.7353	2	0.0022072	2706	160511_QHF_FH_JSI12i_1	64.692	42.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48284	560	45457	291018	390539	390539			1	
STNSVFGGLESMIK	1	Unmodified	1468.7232	0.7231798	406	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	89.417	88.503	2	0.021203	76469	160511_QHF_FH_JSI12i_2	43.68	29.522			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48285	406	45458	291019	390540	390540			1	
STNTSQTGLVGTK	1	Unmodified	1292.6572	0.65720872	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.2	16.742	2	3.8667E-05	14337	160511_QHF_FH_JSI12i_1	80.014	61.036			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48286	4215	45459	291020	390541	390541			1	
STNVIVDSGGFDELGGLLKPTVASQNQNLPVAK	2	Unmodified	3367.7623	0.76234908	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	1	By matching			By MS/MS	2.5	0.5		1	1							1			1	100.74	100.71	3	1.0805E-53	87372	160511_QHF_FH_JSI12i_3	159.08	151.89			1.1589	1.0677	17.444	2	0	Median	1.1332	0.9438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1852	1.2079	NaN	1	0	Median	85212000	33711000	51501000	25324000	10438000	14886000	0	0	0	0	0	0	59888000	23273000	36615000	48287	2425	45460	291021;291022	390542	390542			1	
STNVTVAAAR	0	Unmodified	988.53016	0.53015772	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.675	14.434	2	0.0098655	12027	160511_QHF_FH_JSI10i_1	48.423	15.161			0.27719	0.32637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.27719	0.32637	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58466000	39204000	19262000	0	0	0	58466000	39204000	19262000	0	0	0	0	0	0	48288	2880	45461	291023	390543	390543			1	
STNVVYQAHHVSR	0	Unmodified	1496.7484	0.74842377	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.57	6.43			4						3	4	3			18.138	14.496	3;4	0.00010691	11013	160511_QHF_FH_JSI9i_3	70.373	62.462			0.94192	0.88746	12.543	7	0	Median	1.0842	0.90981	13.135	4	0	Median	0.75301	0.8671	13.257	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	240440000	121950000	118500000	129600000	60659000	68945000	110840000	61287000	49552000	0	0	0	0	0	0	48289	678	45462	291024;291025;291026;291027;291028;291029;291030	390544;390545;390546;390547;390548;390549;390550;390551;390552;390553;390554	390550			10	
STPAAVGAMEDK	1	Unmodified	1175.5492	0.54923818	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4	5.2	3					1				1		2	1	28.08	27.401	2	0.00015988	23692	160511_QHF_FH_JSI9i_1	83.045	60.808			0.85145	0.84002	72.483	3	2	Median	3.0556	2.5469	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85145	0.84002	NaN	1	1	Median	0.62194	0.6518	NaN	1	1	Median	1009300000	553420000	455900000	149170000	19029000	130140000	0	0	0	405010000	228520000	176490000	455140000	305870000	149270000	48290	5280	45463	291031;291032;291033;291034	390555;390556;390557;390558	390558			4	
STPAAVGAMEDK	1	Oxidation (M)	1191.5442	0.5441528	5280	Q9UGI8	TES	Testin	yes	yes	0	0	1	0			By MS/MS		7	6	1					1						2		27.493	27.287	2	0.012662	24178	160511_QHF_FH_JSI11i_1	68.069	49.289			0.87029	0.81716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87029	0.81716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49557000	22564000	26992000	0	0	0	0	0	0	49557000	22564000	26992000	0	0	0	48291	5280	45463	291035;291036	390559;390560	390559		2622	2	
STPAEDDSRDSQVK	1	Unmodified	1533.6907	0.6906937	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	8.5551	8.252	2;3	6.3027E-05	5920	160511_QHF_FH_JSI11i_1	123.84	98.451			1.0272	0.95826	24.497	7	1	Median	1.0272	0.8574	NaN	1	0	Median	0.79378	0.94706	1.663	2	0	Median	1.5548	1.5053	17.046	2	1	Median	1.0091	1.0488	15.002	2	0	Median	650790000	278490000	372300000	66771000	31330000	35442000	188660000	97339000	91323000	222510000	75626000	146880000	172850000	74196000	98654000	48292	5293	45464	291037;291038;291039;291040;291041;291042;291043	390561;390562;390563;390564;390565;390566;390567;390568;390569	390561			8	
STPAITLESPDIK	1	Unmodified	1370.7293	0.72931103	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	2	4	61.433	59.691	2;3	3.0588E-10	54018	160511_QHF_FH_JSI11i_1	146.16	131.49			1.0123	1.0009	37.527	8	2	Median	1.2389	1.0106	25.561	2	0	Median	0.98918	1.1877	NaN	1	0	Median	1.5586	1.5017	27.352	2	1	Median	0.66898	0.70368	6.3583	3	1	Plateau	1310600000	646670000	663880000	324570000	162320000	162250000	292710000	130160000	162550000	342460000	145850000	196610000	350820000	208340000	142480000	48293	764	45465	291044;291045;291046;291047;291048;291049;291050;291051;291052;291053	390570;390571;390572;390573;390574;390575;390576;390577;390578;390579;390580;390581;390582;390583	390571			14	
STPEYFAER	0	Unmodified	1098.4982	0.49818889	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	3	2	34.291	30.278	2	5.8402E-06	27060	160511_QHF_FH_JSI11i_1	114.28	99.345			1.0598	1.0715	13.203	8	0	Median	1.2994	1.0828	NaN	1	0	Median	0.95327	1.136	22.439	2	0	Median	1.004	1.019	13.637	3	0	Median	1.0822	1.1533	11.881	2	0	Median	1703000000	780280000	922710000	212660000	93622000	119040000	428830000	197220000	231600000	745540000	335550000	409990000	315950000	153880000	162070000	48294	891	45466	291054;291055;291056;291057;291058;291059;291060;291061	390584;390585;390586;390587;390588;390589;390590;390591;390592;390593	390584			10	
STPLEENVVDREQIDFLAAR	0	Unmodified	2301.1601	0.16008906	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	79.006	78.751	3	1.9553E-05	68361	160511_QHF_FH_JSI12i_3	56.081	41.919			0.87373	0.89271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87373	0.89271	NaN	1	0	Median	137450000	72277000	65173000	0	0	0	0	0	0	0	0	0	137450000	72277000	65173000	48295	3411	45467	291062	390594	390594			1	
STPLSQPSANGVQTEGLDYDR	0	Unmodified	2234.0451	0.045118877	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	55.039	53.861	2	1.8347E-14	47826	160511_QHF_FH_JSI9i_1	144.68	131.27			2.024	1.6393	NaN	1	1	Median	2.024	1.6393	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26656000	4732000	21924000	26656000	4732000	21924000	0	0	0	0	0	0	0	0	0	48296	3570	45468	291063;291064	390595;390596	390596			2	
STPLSQPSANGVQTEGLDYDRLK	1	Unmodified	2475.2241	0.22414587	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	1.5	0.866	3		1							1		1	2	59.726	59.114	3	2.8999E-09	50841	160511_QHF_FH_JSI12i_3	92.01	87.078			0.92542	1.3446	26.697	4	0	Linear	0.94365	0.78216	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90753	0.85615	NaN	1	0	Median	1.078	1.0935	35.45	2	0	Median	270990000	131240000	139750000	33484000	18331000	15154000	0	0	0	64690000	31770000	32919000	172810000	81136000	91676000	48297	3570	45469	291065;291066;291067;291068	390597;390598	390598			2	
STPLTHDGQPK	1	Unmodified	1179.5884	0.58840088	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	10.259	9.6052	2;3	0.0027344	7167	160511_QHF_FH_JSI12i_2	54.7	43.167			1.0195	1.1087	30.05	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0195	1.1087	30.05	2	1	Median	33967000	16883000	17083000	0	0	0	0	0	0	0	0	0	33967000	16883000	17083000	48298	3816	45470	291069;291070	390599;390600;390601	390601			3	
STPQPPSGK	1	Unmodified	897.4556	0.45559579	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	1	0	3									1	1		1	10.516	10.047	2	0.010434	7653	160511_QHF_FH_JSI9i_1	49.96	34.7			0.87748	0.90713	17.621	3	0	Median	1.5069	1.2297	NaN	1	0	Median	0.7637	0.90538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87748	0.90713	NaN	1	0	Median	175500000	93737000	81765000	47987000	19945000	28041000	62922000	35916000	27006000	0	0	0	64594000	37876000	26718000	48299	1432	45471	291071;291072;291073	390602	390602			1	
STPSHGSVSSLNSTGSLSPK	1	Unmodified	1928.9439	0.94394827	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.234	30.234	3	5.3181E-05	26106	160511_QHF_FH_JSI11i_3	70.837	61.363			0.91187	0.86517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91187	0.86517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42843000	21902000	20941000	0	0	0	0	0	0	42843000	21902000	20941000	0	0	0	48300	5230	45472	291074	390603	390603			1	
STPVKLMR	1	Acetyl (K);Oxidation (M)	988.53755	0.53755128	963	P10243	MYBL1	Myb-related protein A	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4		1	2	1	1	32.218	22.764	2	0.029716	12759	160513_QHF_FH_JSI12Kac_5	46.426	28.39			0.89825	1.0566	185.82	5	1	Median	1.2465	1.0566	NaN	1	0	Median	0.11186	0.1339	294.67	2	1	Median	1.133	1.131	NaN	1	0	Median	0.89825	0.98646	NaN	1	0	Median	39281000	22592000	16689000	6999600	3078300	3921300	12504000	9590200	2913600	8634000	3918100	4715900	11144000	6005700	5137800	48301	963	45473	291075;291076;291077;291078;291079	390604;390605;390606;390607;390608	390607	730		4	
STPVKLMR	1	Acetyl (K)	972.54264	0.54263666	963	P10243	MYBL1	Myb-related protein A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.661							3	4	1	1	3	2	2	45.622	35.61	2	0.00099047	18383	160513_QHF_FH_JSI10Kac_5	108.46	72.066			0.93395	1.0254	3.9439	8	0	Plateau	1.1829	0.99872	NaN	1	0	Median	0.85055	1.0202	5.8123	3	0	Median	0.99492	0.98244	2.7773	2	0	Median	0.93395	1.0281	3.2063	2	0	Median	154780000	83758000	71019000	16317000	7816800	8500000	61321000	33839000	27482000	35651000	20546000	15105000	41489000	21557000	19932000	48302	963	45473	291080;291081;291082;291083;291084;291085;291086;291087	390609;390610;390611;390612;390613;390614;390615;390616	390616	730		8	
STPVNVPISQK	1	Unmodified	1168.6452	0.64518747	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.85	5				1	3				2	2	2	3	40.87	36.979	2	1.2074E-05	32390	160511_QHF_FH_JSI9i_1	108.47	66.594			0.92174	0.88286	11.128	8	3	Median	1.0073	0.84057	4.7643	2	2	Median	0.76284	0.89694	11.97	2	1	Median	0.92174	0.89866	0.33159	2	0	Median	0.89454	0.97235	22.084	2	0	Median	1881800000	1057400000	824360000	671700000	362150000	309550000	392030000	231610000	160420000	404580000	225440000	179140000	413490000	238250000	175250000	48303	3766	45474	291088;291089;291090;291091;291092;291093;291094;291095;291096	390617;390618;390619;390620;390621;390622;390623;390624;390625;390626;390627	390623			11	
STPVTVVLPDTK	1	Unmodified	1255.7024	0.702368	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	60.687	57.075	2	9.3058E-06	50192	160511_QHF_FH_JSI9i_1	119.27	107.64			0.96148	0.89612	14.446	6	0	Median	0.95691	0.77897	NaN	1	0	Median	0.84749	0.99938	20.341	2	0	Median	0.91888	0.88813	6.1847	2	0	Median	0.99492	1.0431	NaN	1	0	Median	1095300000	557980000	537350000	284120000	127800000	156310000	265580000	148430000	117150000	302460000	152010000	150450000	243170000	129730000	113430000	48304	2609	45475	291097;291098;291099;291100;291101;291102;291103	390628;390629;390630;390631;390632;390633;390634;390635;390636;390637;390638;390639;390640;390641;390642	390638			15	
STQAATQVVLNVPETR	0	Unmodified	1712.9057	0.90571227	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	54.643	53.98	2	4.6511E-07	49052	160511_QHF_FH_JSI12i_1	89.136	60.853			0.88489	0.92686	13.01	4	0	Median	1.3928	1.1601	NaN	1	0	Median	0.826	0.96613	NaN	1	0	Median	0.92235	0.87238	NaN	1	0	Median	0.84895	0.88919	NaN	1	0	Median	316840000	167770000	149070000	87011000	43342000	43669000	87809000	51929000	35881000	65149000	30511000	34638000	76873000	41989000	34884000	48305	527	45476	291104;291105;291106;291107;291108	390643;390644;390645;390646;390647;390648	390646			6	
STQAPLIIRPDSGNPLDTVLK	1	Unmodified	2234.227	0.22704641	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.784	4	5	4							3	4	3	3	88.039	87.545	3	1.4833E-15	77107	160511_QHF_FH_JSI9i_2	133.84	101.66			0.91746	0.96359	18.62	13	8	Median	1.0428	0.89943	10.687	3	3	Plateau	0.79976	0.96957	8.0392	4	2	Median	1.1253	1.0769	16.224	3	1	Median	0.91544	0.97257	28.059	3	2	Plateau	1920400000	972270000	948130000	386120000	190410000	195710000	382640000	219240000	163410000	638860000	328130000	310730000	512790000	234500000	278280000	48306	1566	45477	291109;291110;291111;291112;291113;291114;291115;291116;291117;291118;291119;291120;291121	390649;390650;390651;390652;390653;390654;390655;390656;390657;390658;390659;390660;390661;390662;390663;390664;390665;390666;390667;390668;390669;390670;390671;390672;390673;390674;390675;390676;390677	390667			29	
STQFEYAWCLVR	0	Unmodified	1558.7238	0.7238485	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.3	6.6		1							2		1	1	1	81.791	76.574	2	4.793E-16	41409	160513_QHF_FH_JSI10Kac_6	144.17	128.97			1.6461	1.8895	37.997	3	1	Median	NaN	NaN	NaN	0	0	Median	1.6461	1.8895	NaN	1	0	Median	1.0182	0.98791	NaN	1	0	Median	1.7763	1.9256	NaN	1	1	Median	100320000	37846000	62474000	0	0	0	60081000	22898000	37183000	14305000	6858200	7447300	25934000	8090400	17843000	48307	5588	45478	291122;291123;291124	390678;390679;390680	390680			2	
STQGEVTR	0	Unmodified	876.43011	0.43010932	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.0216	4.6799	2	0.0082044	2660	160511_QHF_FH_JSI12i_1	75.825	56.731			0.20087	0.21018	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20087	0.21018	NaN	1	1	Median	235840000	173220000	62621000	0	0	0	0	0	0	0	0	0	235840000	173220000	62621000	48308	834	45479	291125	390681	390681			1	
STQGVTLTDLQEAEK	1	Unmodified	1618.805	0.80499517	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	53.733	52.966	2	9.2359E-09	47049	160511_QHF_FH_JSI9i_1	177.42	124.84			0.879	0.85854	8.2964	5	3	Median	0.97632	0.79833	10.167	2	2	Median	0.79027	0.90313	NaN	1	0	Median	0.879	0.85854	NaN	1	1	Median	0.85727	0.91626	NaN	1	0	Median	510270000	265290000	244980000	208870000	108580000	100290000	118270000	66047000	52219000	90559000	41115000	49443000	92575000	49548000	43027000	48309	227	45480	291126;291127;291128;291129;291130	390682;390683;390684;390685;390686;390687;390688;390689	390689			8	
STQILKTIK	2	Acetyl (K)	1072.6492	0.64921022	5851				yes	yes	1	0	0	1	By matching		By MS/MS		16	0									3	1		2		99.252	89.93	2	0.018131	51566	160513_QHF_FH_JSI11Kac_6	55.549	17.463	+		0.98162	0.92065	1.6341	3	0	Plateau	1.0362	0.89496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98162	0.92065	0	2	0	Median	NaN	NaN	NaN	0	0	Median	140080000	72435000	67649000	13683000	6618100	7065000	0	0	0	126400000	65817000	60584000	0	0	0	48310	5851	45481	291131;291132;291133	390690	390690	3580		1	
STQLKTNR	1	Acetyl (K)	988.53016	0.53015772	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		14.115	6.4935	2	0.018282	5936	160513_QHF_FH_JSI11Kac_4	69.423	44.501			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1542000	1542000	0	0	0	0	0	0	0	1542000	1542000	0	0	0	0	48311	4337	45482	291134	390691	390691	3137		1	
STQLLQAAAAEASLNK	1	Unmodified	1614.8577	0.85769944	2792	Q2M2I8	AAK1	AP2-associated protein kinase 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				68.266	67.368	3	0.0016284	59391	160511_QHF_FH_JSI9i_2	58.246	48.959			2.8877	2.4469	NaN	1	1	Median	2.8877	2.4469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9119300	2062900	7056400	9119300	2062900	7056400	0	0	0	0	0	0	0	0	0	48312	2792	45483	291135	390692	390692			1	
STQLNKK	2	Acetyl (K)	859.47633	0.47633123	1711	P50570	DNM2	Dynamin-2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		12.312	4.6914	2	0.012289	5086	160513_QHF_FH_JSI11Kac_4	89.369	42.706			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4932700	4932700	0	0	0	0	0	0	0	4932700	4932700	0	0	0	0	48313	1711	45484	291136	390693	390693	1724		1	
STQMESTR	0	Unmodified	938.41274	0.4127447	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1			1	1	1	1	5.5297	3.3322	2	0.00070858	2793	160511_QHF_FH_JSI9i_1	99.305	60.486			0.98377	0.91861	16.842	4	2	Median	1.0099	0.83445	NaN	1	0	Median	0.6395	0.76475	NaN	1	1	Median	1.0966	1.1017	NaN	1	1	Median	0.95832	1.0113	NaN	1	0	Median	664660000	332170000	332490000	189750000	96124000	93623000	223460000	116940000	106520000	3569800	1648700	1921000	247880000	117450000	130420000	48314	3799	45485	291137;291138;291139;291140	390694;390695;390696	390696			3	
STQNSFR	0	Unmodified	838.39333	0.39332988	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.43	6.28		4					1	2		1	2	2	2	6.63	2.2824	2	0.0093681	3800	160511_QHF_FH_JSI12i_2	79.451	58.58			0.96734	1.0204	12.948	7	0	Median	1.1617	1.0061	NaN	1	0	Median	0.77899	0.92331	19.646	2	0	Median	1.0017	1.0088	5.8555	2	0	Median	1.0136	1.1254	13.852	2	0	Median	1066800000	587970000	478870000	268800000	133490000	135310000	223570000	130980000	92596000	271920000	136810000	135110000	302540000	186690000	115850000	48315	1579	45486	291141;291142;291143;291144;291145;291146;291147	390697;390698;390699;390700	390697			4	
STQPISSVGKPASVIK	2	Unmodified	1597.9039	0.90392136	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		37.985	37.985	3	0.002061	33330	160511_QHF_FH_JSI11i_3	52.522	43.472			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48316	3285	45487	291148	390701	390701			1	
STQPISSVGKPASVIK	2	Acetyl (K)	1639.9145	0.91448604	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.49					2	3					2	1	2	65.758	56.341	2	0.00046578	29133	160513_QHF_FH_JSI12Kac_3	85.288	71.325			0.99743	1.066	23.58	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98401	1.148	NaN	1	0	Median	1.011	0.98992	NaN	1	0	Median	1.1128	1.1782	38.187	2	0	Median	31876000	14869000	17007000	0	0	0	7873400	4449100	3424300	3780300	1919100	1861300	20222000	8501200	11721000	48317	3285	45487	291149;291150;291151;291152;291153	390702;390703;390704;390705;390706;390707;390708;390709	390705	2821		8	
STQQDIYAGSVQPILR	0	Unmodified	1774.9214	0.92136233	2577	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		62.111	61.673	2	0.0006192	56011	160511_QHF_FH_JSI11i_1	104.81	86.669			1.3395	1.2942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3395	1.2942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29053000	9408300	19645000	0	0	0	0	0	0	29053000	9408300	19645000	0	0	0	48318	2577	45488	291154;291155	390710;390711	390710			2	
STQTVAK	1	Unmodified	733.39702	0.39701828	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	4.3888	1.1943	2	0.0029888	2192	160511_QHF_FH_JSI10i_1	107.43	47.789			1.3057	1.1055	60.914	6	1	Median	1.3426	0.72333	36.084	2	0	Median	1.3513	1.5985	NaN	1	0	Median	1.5585	1.5269	100.54	2	1	Median	1.2616	1.309	NaN	1	0	Median	1601400000	927730000	673640000	232620000	118580000	114040000	496130000	301900000	194240000	346350000	217430000	128920000	526260000	289810000	236450000	48319	1298	45489	291156;291157;291158;291159;291160;291161	390712;390713;390714;390715;390716;390717	390716			6	
STQVWTIEK	1	Unmodified	1090.5659	0.56587452	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	42.847	41.471	2	0.015375	35488	160511_QHF_FH_JSI12i_2	54.539	47.644			0.91052	1.0117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91052	1.0117	NaN	1	1	Median	20266000	9370600	10895000	0	0	0	0	0	0	0	0	0	20266000	9370600	10895000	48320	4659	45490	291162	390718	390718			1	
STRNIETK	1	Unmodified	947.50361	0.50360861	3750	Q8WTW3	COG1	Conserved oligomeric Golgi complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			6.4068	5.8972	3	0.025887	3946	160511_QHF_FH_JSI9i_3	31.074	12.343			1.8348	1.7752	68.183	2	0	Median	1.3281	1.0961	NaN	1	0	Median	2.5347	2.875	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109770000	43535000	66235000	68815000	32400000	36415000	40955000	11135000	29820000	0	0	0	0	0	0	48321	3750	45491	291163;291164	390719	390719			1	
STRPGSSDINVAPGEQGPDQEETNTLVANTSNSNGLK	1	Unmodified	3783.7783	0.77834609	5739	Q9Y6M5	SLC30A1	Zinc transporter 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	57.534	56.81	3	5.4312E-26	51063	160511_QHF_FH_JSI10i_1	98.683	93.678			0.87605	0.88558	25.124	4	1	Median	0.99199	0.85551	NaN	1	0	Median	0.77367	0.9167	NaN	1	0	Median	0.64664	0.62641	NaN	1	1	Median	1.1296	1.1513	NaN	1	0	Median	149970000	76083000	73883000	30657000	11945000	18712000	53093000	26607000	26486000	33765000	23903000	9862300	32451000	13628000	18823000	48322	5739	45492	291165;291166;291167;291168;291169	390720;390721;390722;390723;390724;390725;390726;390727;390728;390729	390725			10	
STSAPQMSPGSSDNQSSSPQPAQQK	1	Unmodified	2531.1194	0.11942281	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	23.537	23.217	2;3	7.3157E-16	20465	160511_QHF_FH_JSI12i_1	114.59	108.01			0.8485	0.93115	16.651	3	1	Median	NaN	NaN	NaN	0	0	Median	0.8485	0.99659	NaN	1	0	Median	0.95945	0.93115	NaN	1	1	Median	0.72535	0.72635	NaN	1	0	Median	88459000	51557000	36902000	0	0	0	58291000	34177000	24114000	13240000	8034400	5205300	16928000	9345500	7582800	48323	2505	45493	291170;291171;291172;291173	390730;390731;390732;390733;390734;390735;390736	390732			7	
STSEENIGIK	1	Unmodified	1076.535	0.53496832	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.255	20.939	2	7.1583E-05	17987	160511_QHF_FH_JSI11i_1	102.62	76.516			0.83545	0.84601	38.462	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6625	0.64455	NaN	1	1	Median	1.0536	1.1104	NaN	1	0	Median	209100000	112200000	96898000	0	0	0	0	0	0	104540000	59718000	44819000	104560000	52484000	52079000	48324	3918	45494	291174;291175	390737;390738	390737			2	
STSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAK	1	Unmodified	3937.7865	0.78651074	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	63.887	63.261	3;4	2.4309E-40	57714	160511_QHF_FH_JSI12i_1	129.59	126.12			1.0292	1.0004	28.386	9	2	Median	0.86835	0.70937	3.5718	2	0	Median	0.60149	0.69916	4.6094	2	0	Median	1.057	1.0271	3.714	2	0	Median	1.1285	1.2044	9.5825	3	2	Median	974530000	493870000	480670000	299880000	151060000	148830000	213130000	125180000	87955000	223480000	111940000	111540000	238040000	105700000	132340000	48325	2307	45495	291176;291177;291178;291179;291180;291181;291182;291183;291184	390739;390740;390741;390742;390743;390744;390745;390746;390747;390748;390749;390750;390751;390752;390753;390754;390755;390756;390757;390758;390759;390760;390761;390762;390763;390764;390765;390766;390767;390768;390769;390770;390771;390772;390773;390774;390775;390776	390753			38	
STSESFIQHIVSLVHHVK	1	Unmodified	2047.0851	0.085073618	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			83.68	77.081	4;5	7.4511E-12	43083	160513_QHF_FH_JSI10Kac_6	121.74	97.549			1.0051	0.98027	25.975	3	1	Median	1.0051	0.85848	NaN	1	1	Median	0.98504	1.1787	26.067	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	452920000	264700000	188220000	33353000	17028000	16325000	419570000	247670000	171890000	0	0	0	0	0	0	48326	5124	45496	291185;291186;291187	390777;390778;390779;390780	390779			4	
STSGEGFQFGK	1	Unmodified	1143.5197	0.51965261	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	33.967	33.175	2	0.0019485	28896	160511_QHF_FH_JSI9i_2	74.267	49.13			0.92725	0.89028	31.12	4	4	Median	1.2921	1.1121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92725	0.9463	40.094	2	2	Median	0.62845	0.67807	NaN	1	1	Median	141680000	78580000	63102000	41447000	23420000	18026000	0	0	0	68711000	35219000	33492000	31523000	19940000	11583000	48327	1685;31;191	45497	291188;291189;291190;291191;291192	390781;390782;390783;390784;390785	390783			5	
STSGEGFQFGKK	2	Unmodified	1271.6146	0.61461563	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	23.033	23.021	2;3	6.6557E-05	19043	160511_QHF_FH_JSI12i_3	96.143	73.362			0.98451	0.96867	4.2366	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0074	0.94131	NaN	1	0	Median	0.97034	0.92925	5.8982	2	0	Median	237790000	120970000	116820000	0	0	0	0	0	0	79192000	36062000	43129000	158600000	84904000	73694000	48328	1685;31;191	45498	291193;291194;291195	390786;390787;390788	390788			2	
STSGEGFQFGKK	2	Acetyl (K)	1313.6252	0.62518031	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	1	0	0	1		By MS/MS			14	0							1				1			49.847	39.458	2	0.036054	22177	160513_QHF_FH_JSI10Kac_4	54.608	29.753			5.1859	6.0522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.1859	6.0522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2070300	465390	1604900	0	0	0	2070300	465390	1604900	0	0	0	0	0	0	48329	1685;31;191	45498	291196	390789	390789			1	
STSHTSDFNPNSGSDQR	0	Unmodified	1835.767	0.76704654	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0				By MS/MS	2.67	0.471		1	2										3	11.637	10.901	3	0.00019282	8351	160511_QHF_FH_JSI12i_3	53.565	47.533			0.86189	0.92038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86189	0.92038	NaN	1	1	Median	17382000	8536900	8845400	0	0	0	0	0	0	0	0	0	17382000	8536900	8845400	48330	4302	45499	291197;291198;291199	390790;390791;390792	390791			3	
STSIQSFK	1	Unmodified	896.46035	0.46034682	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.5	4	4	3				3	1		3	3	6	3	24.67	21.679	2	0.00021531	17959	160511_QHF_FH_JSI11i_2	119.29	71.442			1.1665	1.1251	22.99	15	4	Median	1.479	1.215	18.09	3	1	Median	0.93531	1.1263	21.828	3	0	Plateau	1.0555	1.035	27.852	6	2	Median	1.014	1.0893	18.894	3	1	Plateau	4769300000	2452300000	2317000000	975770000	469520000	506250000	1240300000	711960000	528350000	1498500000	720310000	778210000	1054700000	550520000	504160000	48331	1039	45500	291200;291201;291202;291203;291204;291205;291206;291207;291208;291209;291210;291211;291212;291213;291214	390793;390794;390795;390796;390797;390798;390799;390800;390801;390802;390803;390804;390805;390806;390807;390808;390809;390810;390811;390812;390813	390810			21	
STSIQSFKDK	2	Acetyl (K)	1181.5928	0.59281755	1039	P13797	PLS3	Plastin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	46.292	36.604	2	3.1696E-17	21457	160513_QHF_FH_JSI11Kac_4	166.55	97.814			0.76934	0.86762	31.687	6	0	Median	NaN	NaN	NaN	0	0	Median	0.83517	0.99016	13.781	2	0	Median	0.52235	0.51608	0.55769	2	0	Median	0.81103	0.87525	6.1403	2	0	Median	67617000	40148000	27469000	0	0	0	22408000	11907000	10500000	22785000	14454000	8330800	22424000	13786000	8637800	48332	1039	45501	291215;291216;291217;291218;291219;291220	390814;390815;390816;390817;390818;390819;390820;390821;390822;390823	390819	871		10	
STSKEPVDFEQWIEK	2	Unmodified	1821.8785	0.87849447	5649	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		71.501	71.501	3	5.6386E-05	63631	160511_QHF_FH_JSI11i_3	96.773	91.317			0.86361	0.80086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86361	0.80086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68488000	41137000	27351000	0	0	0	0	0	0	68488000	41137000	27351000	0	0	0	48333	5649	45502	291221	390824	390824			1	
STSLDVEPIYTFR	0	Unmodified	1526.7617	0.76167379	381	O43815	STRN	Striatin	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	75.711	74.772	2	2.5307E-07	65675	160511_QHF_FH_JSI11i_2	137.89	111.22			1.2788	1.3431	13.718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1759	1.2189	NaN	1	0	Median	1.3907	1.4799	NaN	1	0	Median	62044000	21927000	40116000	0	0	0	0	0	0	35846000	12855000	22992000	26198000	9072800	17125000	48334	381	45503	291222;291223	390825	390825			1	
STSLETQDDDNIR	0	Unmodified	1492.6641	0.66414459	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	25.456	23.274	2	1.9456E-66	20339	160511_QHF_FH_JSI11i_1	229.16	211.3			1.0235	0.86125	7.0849	5	0	Linear	1.0776	0.88207	NaN	1	0	Median	0.75831	0.88238	NaN	1	0	Median	1.0236	0.95746	0.89944	2	0	Median	0.77131	0.8079	NaN	1	0	Median	292020000	161990000	130020000	72622000	40348000	32274000	71937000	43861000	28076000	70576000	34898000	35677000	76880000	42886000	33994000	48335	3050	45504	291224;291225;291226;291227;291228	390826;390827;390828;390829;390830;390831;390832;390833	390827			8	
STSLTFHWK	1	Unmodified	1105.5556	0.55564418	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	2	3	3	4	52.963	47.205	2;3	7.6439E-08	24798	160513_QHF_FH_JSI12Kac_6	121.73	107.06			1.024	1.1049	14.918	12	4	Median	1.4557	1.2089	9.3656	2	1	Median	0.98422	1.1644	17.205	3	1	Median	1.2245	1.1529	23.262	3	1	Plateau	0.9982	1.0515	5.2575	4	1	Median	715960000	324750000	391210000	84627000	39582000	45045000	165610000	83301000	82312000	170300000	78667000	91636000	295420000	123200000	172220000	48336	4724	45505	291229;291230;291231;291232;291233;291234;291235;291236;291237;291238;291239;291240	390834;390835;390836;390837;390838;390839;390840;390841;390842;390843;390844;390845;390846;390847	390845			14	
STSMDSGSSESPASLK	1	Unmodified	1569.6828	0.68283113	2711	Q15811	ITSN1	Intersectin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	26.09	25.758	2	3.6847E-30	22929	160511_QHF_FH_JSI12i_1	191.53	182.57		+	1.0039	1.1018	13.808	4	3	Median	NaN	NaN	NaN	0	0	Median	0.84939	1.0028	11.703	2	2	Median	1.3694	1.2935	NaN	1	1	Median	1.0754	1.1144	NaN	1	0	Median	205920000	106450000	99468000	0	0	0	103020000	56273000	46746000	49279000	22869000	26410000	53620000	27308000	26312000	48337	2711	45506	291241;291242;291243;291244;291245	390848;390849;390850;390851;390852;390853;390854;390855	390852			8	
STSQSSESSVK	1	Unmodified	1125.515	0.51496116	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	4.9534	4.6394	2	2.9438E-23	2579	160511_QHF_FH_JSI10i_1	176.6	134			0.95283	0.97712	19.75	4	1	Median	1.3166	1.0936	NaN	1	0	Median	0.74869	0.87304	NaN	1	0	Median	0.80068	0.78753	NaN	1	0	Median	1.1339	1.2084	NaN	1	1	Median	861010000	451350000	409660000	162100000	69374000	92723000	239710000	140150000	99563000	204020000	110060000	93960000	255180000	131760000	123420000	48338	5113	45507	291246;291247;291248;291249;291250	390856;390857;390858;390859;390860;390861;390862	390860			7	
STSQVAASLLASK	1	Unmodified	1261.6878	0.68778057	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.11		4	2				1			1	1	3	2	53.584	51.09	2	2.2124E-09	43526	160511_QHF_FH_JSI12i_3	107.17	76.848			1.2948	1.4578	15.458	6	3	Median	1.8968	1.639	NaN	1	1	Median	1.3187	1.605	NaN	1	0	Median	1.2713	1.1884	17.791	3	1	Plateau	1.158	1.3241	NaN	1	1	Median	207860000	96355000	111500000	34160000	11110000	23050000	43532000	21026000	22505000	94798000	47451000	47346000	35366000	16768000	18598000	48339	5113	45508	291251;291252;291253;291254;291255;291256;291257	390863;390864;390865;390866;390867;390868;390869;390870	390870			6	
STSSFPCPAGHFNGFR	0	Unmodified	1767.7787	0.77873762	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				54.668	53.093	3	0.0059857	43543	160511_QHF_FH_JSI9i_3	34.82	32.387			0.97468	0.8163	NaN	1	0	Median	0.97468	0.8163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14901000	7141700	7759800	14901000	7141700	7759800	0	0	0	0	0	0	0	0	0	48340	2271	45509	291258	390871	390871			1	
STSSHGTDEMESSSYR	0	Unmodified	1759.6955	0.69552108	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	12.365	11.847	3	0.00013245	9198	160511_QHF_FH_JSI11i_2	66.436	56.097			0.93979	1.0418	13.316	3	0	Plateau	0.93979	0.82558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0085	1.0455	NaN	1	0	Median	0.76138	0.83513	NaN	1	0	Median	72565000	34132000	38434000	17084000	8794500	8289300	0	0	0	35877000	15786000	20091000	19604000	9550900	10053000	48341	3426	45510	291259;291260;291261	390872;390873	390873			2	
STSSLRR	0	Acetyl (Protein N-term)	847.45118	0.45117911	5727	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	1	0	1	By MS/MS				2	0		1								1				8.9367	8.4605	2	0.0092042	6280	160511_QHF_FH_JSI9i_2	45.952	10.458			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48342	5727	45511	291262	390874	390874			1	
STSSTPVKFISR	1	Acetyl (K)	1350.7143	0.71432967	4781	Q9H8E8	CSRP2BP	Cysteine-rich protein 2-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	0.781						3	3	2		1	2	2	3	58.563	48.328	2	2.8948E-50	26897	160513_QHF_FH_JSI12Kac_4	215.5	184.43			0.92369	1.0225	120.62	8	2	Median	0.074935	0.062951	NaN	1	1	Median	0.9264	1.0975	5.3197	2	0	Median	1.0951	1.0428	4.018	2	0	Median	0.90653	0.99914	134.66	3	1	Median	154020000	86809000	67213000	3991600	3530500	461140	56797000	31927000	24870000	42608000	21678000	20929000	50625000	29673000	20952000	48343	4781	45512	291263;291264;291265;291266;291267;291268;291269;291270	390875;390876;390877;390878;390879;390880;390881;390882;390883;390884;390885	390882	3231		11	
STSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR	0	Unmodified	3708.736	0.73595269	968	P10398	ARAF	Serine/threonine-protein kinase A-Raf	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.886	88.775	3	0.00088772	77094	160511_QHF_FH_JSI12i_3	37.468	32.309			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48344	968	45513	291271	390886	390886			1	
STSTPNVHMVSTTLPVDSR	0	Unmodified	2027.9946	0.99460363	801	P04049	RAF1	RAF proto-oncogene serine/threonine-protein kinase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.289	53.772	3	0.0044258	46537	160511_QHF_FH_JSI11i_2	34.265	27.374			0.29977	0.2954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29977	0.2954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48387000	39624000	8763300	0	0	0	0	0	0	48387000	39624000	8763300	0	0	0	48345	801	45514	291272	390887;390888	390888			2	
STSTPTSPGPR	0	Unmodified	1086.5306	0.53055165	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	2	2	1	11.188	7.9117	2	6.6549E-13	7115	160511_QHF_FH_JSI10i_1	144.09	127.89			0.85101	0.9103	9.2538	5	2	Median	1.2119	1.0003	NaN	1	0	Median	0.7188	0.84505	10.519	2	1	Median	0.97313	0.96041	NaN	1	1	Median	0.85101	0.89089	NaN	1	0	Median	502590000	261870000	240720000	157690000	70868000	86819000	186850000	106830000	80024000	2410100	976140	1434000	155640000	83201000	72443000	48346	3801	45515	291273;291274;291275;291276;291277;291278	390889;390890;390891;390892;390893;390894;390895;390896;390897	390893			9	
STSTSSMK	1	Unmodified	827.36948	0.3694829	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.4636	4.078	2	0.0033437	2059	160511_QHF_FH_JSI10i_1	73.26	73.26			1.0332	1.0629	50.429	3	0	Median	1.2937	1.0629	NaN	1	0	Median	1.0332	1.229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.46874	0.48155	NaN	1	0	Median	286680000	169050000	117630000	109060000	50273000	58791000	76419000	42322000	34097000	0	0	0	101190000	76454000	24738000	48347	1298	45516	291279;291280;291281;291282	390898;390899;390900;390901	390900			4	
STSTSSMKK	2	Unmodified	955.46445	0.46444592	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	6	5.2			3					1		1		1	2	1.9933	-0.30915	3	0.0011045	366	160511_QHF_FH_JSI12i_3	50.292	34.09			3.1953	3.1055	104.22	4	2	Median	1.0876	0.90928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3.3253	3.0488	NaN	1	1	Median	5.9254	6.0748	92.286	2	1	Median	72503000	15120000	57383000	4330600	2062500	2268100	0	0	0	28284000	6458300	21826000	39888000	6599700	33289000	48348	1298	45517	291283;291284;291285;291286	390902;390903;390904;390905	390904			4	
STSVGPLYSGCR	0	Unmodified	1282.5976	0.59758535	3812	Q8WXI7	MUC16	Mucin-16	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	31.994	31.139	2	7.3393E-05	26414	160511_QHF_FH_JSI11i_2	94.692	71.952			1.1235	1.1791	45.703	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85954	0.85348	NaN	1	0	Median	1.4685	1.6289	NaN	1	0	Median	53276000	25736000	27540000	0	0	0	0	0	0	32734000	18364000	14370000	20542000	7372300	13170000	48349	3812	45518	291287;291288	390906;390907;390908	390908			3	
STSVPQGHTWTQR	0	Acetyl (Protein N-term)	1525.7274	0.72735397	5127	Q9NYJ1	COA4	Cytochrome c oxidase assembly factor 4 homolog, mitochondrial	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.7	3	4	2				1			2	1	4	3	32.227	30.668	2	1.1044E-05	25958	160511_QHF_FH_JSI11i_2	162.38	133.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48350	5127	45519	291289;291290;291291;291292;291293;291294;291295;291296;291297;291298	390909;390910;390911;390912;390913;390914;390915;390916;390917;390918	390916			10	
STSYGYSR	0	Unmodified	919.40356	0.40356022	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		10	9.802	2	0.016008	7341	160511_QHF_FH_JSI11i_2	49.933	34.301			1.1684	1.165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1684	1.165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28888000	14235000	14652000	0	0	0	0	0	0	28888000	14235000	14652000	0	0	0	48351	2376	45520	291299	390919	390919			1	
STTAAVFLSVEDDNDNAPQFSEKR	1	Unmodified	2640.2304	0.23035346	4864	Q9HCU4	CELSR2	Cadherin EGF LAG seven-pass G-type receptor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	91.961	91.233	3	0.059802	76119	160511_QHF_FH_JSI10i_3	12.554	9.3398			0.93862	0.93616	7.6932	3	0	Median	1.2866	1.0523	NaN	1	0	Median	0.8105	0.91018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93862	0.93616	NaN	1	0	Median	447170000	229290000	217880000	115120000	48547000	66573000	106040000	58231000	47811000	0	0	0	226010000	122510000	103500000	48352	4864	45521	291300;291301;291302	390920	390920			1	
STTELDDYSTNK	1	Unmodified	1372.5994	0.59941907	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	1	2	3	28.005	24.382	2	2.3531E-93	21392	160511_QHF_FH_JSI11i_1	262.61	248.84			1.0541	1.0359	31.09	8	4	Median	1.1257	0.93062	36.283	2	2	Median	0.80281	0.93027	NaN	1	0	Median	1.0541	1.0176	17.714	2	0	Median	1.2579	1.3103	49.37	3	2	Median	486520000	230570000	255950000	165510000	73082000	92432000	101110000	54097000	47013000	91425000	44598000	46827000	128470000	58792000	69681000	48353	3799	45522	291303;291304;291305;291306;291307;291308;291309;291310	390921;390922;390923;390924;390925;390926;390927;390928;390929;390930;390931	390921			11	
STTELPLTVSYDK	1	Unmodified	1452.7348	0.73479034	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	65.319	60.955	2	1.6366E-10	54567	160511_QHF_FH_JSI10i_1	150.46	104.48			0.97608	1.0417	10.927	7	0	Median	1.126	0.94247	NaN	1	0	Median	0.80852	0.94891	16.06	2	0	Median	1.174	1.1314	8.4657	2	0	Median	0.95245	1.0265	2.0766	2	0	Median	1519800000	766160000	753660000	348140000	173170000	174980000	427430000	241050000	186380000	390540000	182970000	207560000	353710000	168980000	184730000	48354	4153	45523	291311;291312;291313;291314;291315;291316;291317	390932;390933;390934;390935;390936;390937;390938;390939;390940;390941;390942;390943	390939			12	
STTFEKSLLMGK	2	Acetyl (K)	1382.7116	0.71155248	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		77.812	67.073	2	0.036308	35927	160513_QHF_FH_JSI11Kac_4	63.283	43.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48355	2349	45524	291318	390944	390944			1	
STTGAPSTTADSK	1	Unmodified	1222.5677	0.56772501	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.44	4				3					1	2	2	2	8.4339	5.7795	2	9.1399E-11	5517	160511_QHF_FH_JSI12i_1	152.64	135.17			0.87158	0.874	47.599	6	1	Median	1.0785	0.88431	NaN	1	0	Median	0.82437	0.95522	NaN	1	0	Median	0.85112	0.81863	7.5978	2	0	Median	1.3827	1.4882	84.981	2	1	Median	379160000	185230000	193940000	84480000	40767000	43713000	101070000	53687000	47381000	103080000	44911000	58165000	90540000	45862000	44679000	48356	5409	45525	291319;291320;291321;291322;291323;291324;291325	390945;390946;390947;390948;390949;390950;390951;390952;390953;390954	390949			10	
STTGPFDREHLLSYLEK	1	Unmodified	1991.9953	0.99525556	5130	Q9NYL9	TMOD3	Tropomodulin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			5							2	3			76.736	75.311	3;4	7.4834E-05	61902	160511_QHF_FH_JSI9i_3	68.481	61.752			0.94992	0.85816	15.4	5	1	Median	1.0133	0.81922	7.6121	2	0	Median	0.70641	0.83086	18.306	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	232980000	126660000	106320000	119210000	56009000	63203000	113770000	70652000	43118000	0	0	0	0	0	0	48357	5130	45526	291326;291327;291328;291329;291330	390955;390956;390957;390958;390959;390960;390961;390962	390960			8	
STTLFSR	0	Unmodified	810.42357	0.42356738	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.55		4	1					3	5	4	3	5	1	29.987	24.93	2	0.0010611	20996	160511_QHF_FH_JSI11i_2	125.01	89.806			0.98169	0.93241	23.887	10	3	Median	1.1514	0.97965	6.9957	3	1	Median	0.73298	0.88913	3.794	2	0	Median	0.89369	0.89789	33.615	4	2	Median	1.0264	1.1762	NaN	1	0	Median	2220200000	1267200000	952920000	412610000	217280000	195330000	417950000	245580000	172370000	1077900000	655590000	422330000	311690000	148790000	162890000	48358	1798	45527	291331;291332;291333;291334;291335;291336;291337;291338;291339;291340;291341;291342;291343	390963;390964;390965;390966;390967;390968;390969;390970;390971;390972;390973;390974	390969			12	
STTNELK	1	Unmodified	791.4025	0.40249759	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.2438	5.9199	2	0.01483	3668	160511_QHF_FH_JSI9i_1	65.252	23.75			0.043911	0.049075	39.097	4	4	Median	0.094924	0.080975	NaN	1	1	Median	0.039335	0.046907	NaN	1	1	Median	0.031933	0.03123	NaN	1	1	Median	0.049019	0.051344	NaN	1	1	Median	16516000000	16049000000	467390000	3859100000	3734900000	124270000	3969900000	3858200000	111740000	4349300000	4242200000	107090000	4338100000	4213800000	124290000	48359	3896	45528	291344;291345;291346;291347	390975;390976;390977;390978	390978			4	
STTPGGTGIK	1	Unmodified	917.48181	0.48181054	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1	0	3									1		1	1	10.867	10.434	2	0.046372	7992	160511_QHF_FH_JSI9i_1	36.381	11.531			0.87178	0.89748	32.858	3	0	Median	0.66189	0.55956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0967	1.0526	NaN	1	0	Median	0.87178	0.89748	NaN	1	0	Median	138180000	73145000	65036000	66119000	41369000	24750000	0	0	0	37491000	16684000	20807000	34572000	15093000	19479000	48360	4929	45529	291348;291349;291350	390979	390979			1	
STTPGGTGIKPFLER	1	Acetyl (K)	1601.8413	0.8413211	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.484							3	5		1	3	1	3	74.272	63.686	2	1.9285E-06	31791	160513_QHF_FH_JSI10Kac_5	108.37	73.485			1.0005	0.98862	38.71	5	0	Median	0.83273	0.67785	NaN	1	0	Median	0.70968	0.8405	NaN	1	0	Median	1.0005	0.98862	NaN	1	0	Median	1.3831	1.4777	34.857	2	0	Median	24334000	13952000	10382000	2354700	1224100	1130600	5390600	3885900	1504700	9200900	4902500	4298300	7388100	3939600	3448500	48361	4929	45530	291351;291352;291353;291354;291355;291356;291357;291358	390980;390981;390982;390983;390984;390985;390986;390987;390988;390989	390989	3271		10	
STTPTSSPFR	0	Unmodified	1079.5247	0.52473799	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS		By MS/MS		10.3	5.91		1					1	1		1		2		27.219	22.328	2	0.00018521	18885	160511_QHF_FH_JSI11i_2	93.467	67.731			1.5089	1.379	29.101	2	2	Median	2.0342	1.694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.1225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89764000	47286000	42478000	1255100	422270	832830	0	0	0	88509000	46864000	41645000	0	0	0	48362	5646	45531	291359;291360;291361	390990;390991;390992	390992			3	
STTSDIPHMLNQVESK	1	Unmodified	1785.8567	0.85671317	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	56.854	56.01	2;3	1.4556E-05	48516	160511_QHF_FH_JSI11i_2	103.01	92.065			0.83577	0.85603	36.48	4	1	Median	0.71383	0.62102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83577	0.85603	15.046	2	1	Median	1.3471	1.4598	NaN	1	0	Median	338290000	182160000	156130000	15105000	9231700	5872800	0	0	0	307130000	164900000	142230000	16050000	8024700	8025200	48363	2844	45532	291362;291363;291364;291365;291366	390993;390994;390995;390996	390995			3	
STTSGEELVVQVPVVDVQSNNFK	1	Unmodified	2475.2493	0.24929799	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	87.868	87.45	3	0.00022056	79670	160511_QHF_FH_JSI12i_1	44.258	41.205			1.0484	1.0329	10.681	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1519	1.114	NaN	1	0	Median	0.95414	0.95779	NaN	1	0	Median	53640000	27647000	25993000	0	0	0	0	0	0	26023000	12808000	13215000	27617000	14839000	12778000	48364	4094	45533	291367;291368	390997;390998	390998			2	
STTSLTSSSTSGSSDK	1	Unmodified	1531.6849	0.68493962	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	12.755	10.073	2	1.8943E-80	8726	160511_QHF_FH_JSI10i_1	240.59	222.77			0.82407	0.87157	14.348	6	0	Median	1.282	1.0917	NaN	1	0	Median	0.7477	0.87157	1.0763	2	0	Median	0.88073	0.83419	NaN	1	0	Median	0.86225	0.93926	23.926	2	0	Median	249640000	130010000	119630000	65725000	31204000	34522000	55433000	28083000	27350000	65409000	36845000	28564000	63074000	33877000	29197000	48365	1499	45534	291369;291370;291371;291372;291373;291374	390999;391000;391001;391002;391003;391004;391005;391006	391002			8	
STTSTIESFAAQEK	1	Unmodified	1498.7151	0.71511753	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.55	6.02	7					2	2			2	4	3	2	51.816	48.204	2;3	5.4585E-34	43439	160511_QHF_FH_JSI11i_1	241.92	213.91			0.95918	1.0605	30.675	10	3	Median	0.9525	0.78377	38.5	2	0	Median	0.87425	1.1351	5.017	3	0	Plateau	1.13	1.0781	44.105	3	1	Median	0.93587	0.97139	17.766	2	2	Median	1000200000	509690000	490550000	182690000	95702000	86984000	84693000	45878000	38815000	455810000	224000000	231800000	277050000	144100000	132950000	48366	660	45535	291375;291376;291377;291378;291379;291380;291381;291382;291383;291384;291385	391007;391008;391009;391010;391011;391012;391013;391014;391015;391016;391017;391018	391008			12	
STTSVSEEDVSSR	0	Unmodified	1382.6161	0.61613177	4130	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	19.894	15.368	2	5.0719E-82	12975	160511_QHF_FH_JSI9i_1	246.14	191.15			2.1513	2.158	97.985	10	3	Median	0.54294	0.45109	NaN	1	0	Median	0.37356	0.43247	12.209	3	1	Plateau	2.3575	2.3024	22.825	3	1	Median	2.0757	2.1808	19.683	3	1	Plateau	510970000	267110000	243860000	118980000	74576000	44408000	155420000	116680000	38743000	95521000	28166000	67355000	141040000	47692000	93353000	48367	4130	45536	291386;291387;291388;291389;291390;291391;291392;291393;291394;291395	391019;391020;391021;391022;391023;391024;391025;391026;391027;391028;391029;391030	391028			12	
STTTGHLIYK	1	Unmodified	1119.5924	0.59242362	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.43	4	18	19				3	9	15	16	15	23	14	21.415	17.576	2;3	1.8232E-56	10100	160513_QHF_FH_JSI9Kac_6	222.18	172.14			0.93959	0.97205	78.644	62	16	Median	1.1516	0.98069	69.663	15	6	Median	0.80397	0.93238	64.379	15	1	Median	1.0208	0.96229	100.87	20	7	Median	0.93959	1.0141	66.915	12	2	Median	119920000000	56830000000	63091000000	19613000000	8351900000	11261000000	25845000000	15145000000	10700000000	47101000000	20715000000	26387000000	27362000000	12619000000	14743000000	48368	2072;2231	45537	291396;291397;291398;291399;291400;291401;291402;291403;291404;291405;291406;291407;291408;291409;291410;291411;291412;291413;291414;291415;291416;291417;291418;291419;291420;291421;291422;291423;291424;291425;291426;291427;291428;291429;291430;291431;291432;291433;291434;291435;291436;291437;291438;291439;291440;291441;291442;291443;291444;291445;291446;291447;291448;291449;291450;291451;291452;291453;291454;291455;291456;291457;291458;291459;291460;291461;291462;291463	391031;391032;391033;391034;391035;391036;391037;391038;391039;391040;391041;391042;391043;391044;391045;391046;391047;391048;391049;391050;391051;391052;391053;391054;391055;391056;391057;391058;391059;391060;391061;391062;391063;391064;391065;391066;391067;391068;391069;391070;391071;391072;391073;391074;391075;391076;391077;391078;391079;391080;391081;391082;391083;391084;391085;391086;391087;391088;391089;391090;391091;391092;391093;391094;391095;391096;391097;391098;391099;391100;391101;391102;391103;391104;391105;391106;391107;391108;391109;391110;391111;391112;391113;391114;391115;391116;391117;391118;391119;391120;391121;391122;391123;391124;391125;391126;391127;391128;391129;391130;391131;391132;391133;391134;391135;391136;391137;391138;391139;391140;391141;391142;391143;391144;391145;391146;391147;391148;391149;391150;391151;391152;391153;391154;391155;391156;391157;391158;391159;391160	391139			128	
STTTIGLVQALGAHLYQNVFACVR	0	Unmodified	2618.3639	0.36389102	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	96.882	89.011	3;4	4.8939E-272	47920	160513_QHF_FH_JSI12Kac_6	336.21	322.94			1.188	1.132	11.681	5	0	Median	1.3456	1.1474	NaN	1	0	Median	0.96726	1.127	0.62199	2	0	Median	1.188	1.1185	NaN	1	0	Median	1.4074	1.4658	NaN	1	0	Median	6499900000	3174800000	3325000000	500700000	215870000	284830000	2297300000	1241800000	1055500000	1962000000	898210000	1063800000	1739800000	818900000	920930000	48369	1004	45538	291464;291465;291466;291467;291468	391161;391162;391163;391164;391165;391166	391163			6	
STVAESVSQQILR	0	Unmodified	1416.7573	0.75725712	3366	Q86WX3	RPS19BP1	Active regulator of SIRT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		58.851	58.063	2	1.1027E-07	50936	160511_QHF_FH_JSI9i_2	139.86	113.92			0.93705	0.94568	18.913	3	0	Median	1.2455	1.0725	NaN	1	0	Median	0.60799	0.73943	NaN	1	0	Median	0.93705	0.94568	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	173730000	94909000	78826000	59143000	28094000	31049000	43488000	27677000	15811000	71104000	39138000	31966000	0	0	0	48370	3366	45539	291469;291470;291471	391167;391168;391169;391170;391171	391167			5	
STVALTAAR	0	Unmodified	888.50288	0.50288033	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		20.725	20.039	2	0.00091672	16476	160511_QHF_FH_JSI11i_2	71.692	25.266			0.99789	0.8964	19.495	3	0	Plateau	0.80131	0.68641	NaN	1	0	Median	0.72009	0.8964	NaN	1	0	Median	0.99789	1.0033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299120000	154610000	144510000	88721000	47787000	40934000	88037000	49239000	38798000	122370000	57588000	64780000	0	0	0	48371	4623	45540	291472;291473;291474	391172	391172			1	
STVAQLVK	1	Unmodified	844.50182	0.5018177	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		8	6		1					1			1		1		33.529	28.215	2	0.0029335	24004	160511_QHF_FH_JSI9i_2	83.313	50.843			1.0833	0.99444	49.875	2	1	Median	1.6675	1.4149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70378	0.6989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	208570000	74685000	133890000	200450000	70179000	130270000	0	0	0	8122800	4506400	3616400	0	0	0	48372	1263	45541	291475;291476	391173;391174	391174			2	
STVASMMHR	0	Unmodified	1018.4688	0.46881979	2439;2440	Q13555;Q13554;Q13557	CAMK2G;CAMK2B;CAMK2D	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit delta	no	no	0	0	0	0	By MS/MS				3	0			1							1				18.736	17.575	2	0.014962	14126	160511_QHF_FH_JSI9i_3	45.68	33.911			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48373	2439;2440	45542	291477	391175	391175			1	
STVAVNMNDLGSQPHEDREPVDPTTK	1	Unmodified	2836.3297	0.32974993	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	49.646	49.092	4	2.0433E-18	43495	160511_QHF_FH_JSI11i_3	112.23	109.5			1.0865	1.0897	20.705	5	0	Median	1.5026	1.2677	NaN	1	0	Median	1.1432	1.4206	NaN	1	0	Median	0.97576	0.92896	17.098	2	0	Median	1.0865	1.0897	NaN	1	0	Median	301780000	142090000	159690000	53499000	20745000	32755000	68577000	29410000	39167000	125070000	57626000	67444000	54631000	34309000	20321000	48374	2547	45543	291478;291479;291480;291481;291482	391176;391177;391178;391179;391180;391181;391182;391183;391184;391185;391186	391177			11	
STVDAEAVHK	1	Unmodified	1055.5247	0.52473799	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			1	2	3	2	12.22	9.9708	2;3	1.645E-09	8074	160511_QHF_FH_JSI12i_2	133.13	106.53			1.0195	0.99937	36.624	8	2	Median	0.6635	0.56116	NaN	1	0	Median	0.76356	0.91807	77.981	2	1	Median	1.0549	1.0005	3.6799	3	1	Plateau	0.90663	0.97007	21.558	2	0	Median	261710000	129540000	132170000	30889000	17448000	13441000	84208000	40974000	43234000	67157000	33546000	33611000	79455000	37570000	41885000	48375	1778	45544	291483;291484;291485;291486;291487;291488;291489;291490	391187;391188;391189;391190;391191;391192;391193;391194;391195;391196;391197	391189			11	
STVDAPTAAGR	0	Unmodified	1044.52	0.51998696	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	14.25	13.551	2	3.5533E-05	11291	160511_QHF_FH_JSI12i_1	104.42	76.541			0.91649	0.84155	3.0138	2	2	Median	1.0686	0.85967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78602	0.8238	NaN	1	1	Median	377370000	196850000	180520000	177210000	85099000	92110000	0	0	0	0	0	0	200160000	111750000	88409000	48376	4321	45545	291491;291492	391198;391199	391198			2	
STVEGIQASVK	1	Unmodified	1117.5979	0.59790293	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	5.79	4	1	1		1	4	1			2	3	3	4	33.177	27.128	2	2.4374E-23	26381	160511_QHF_FH_JSI11i_1	177.78	114.7			0.91371	1.0214	11.396	11	1	Median	1.3219	1.0805	1.5032	2	1	Median	0.90054	1.0613	7.9187	3	0	Plateau	0.91371	0.8967	7.4248	3	0	Median	0.76725	0.80665	15.603	3	0	Plateau	2061200000	1043900000	1017400000	431760000	224810000	206950000	549030000	275120000	273920000	423820000	204020000	219800000	656620000	339930000	316700000	48377	1139	45546	291493;291494;291495;291496;291497;291498;291499;291500;291501;291502;291503;291504	391200;391201;391202;391203;391204;391205;391206;391207;391208;391209;391210;391211;391212;391213;391214;391215	391201			16	
STVFGTALNYVSLR	0	Unmodified	1526.8093	0.80929269	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			84.768	76.156	2	4.0237E-74	43614	160513_QHF_FH_JSI10Kac_6	220.66	185			0.28973	0.24738	NaN	1	1	Median	0.28973	0.24738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148280000	100890000	47386000	148280000	100890000	47386000	0	0	0	0	0	0	0	0	0	48378	1621	45547	291505;291506	391216;391217	391217			2	
STVHEILCK	1	Acetyl (Protein N-term)	1127.5645	0.56449431	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.16	4	4	1			2	3	2		3	4	3	6	48.325	43.711	2	5.712E-17	25235	160513_QHF_FH_JSI11Kac_4	70.919	62.979			1.0282	1.0299	27.402	15	3	Median	1.2317	1.0234	47.882	3	1	Median	0.87955	1.0521	15.851	4	1	Median	0.93278	0.87295	6.7255	3	0	Plateau	1.1912	1.319	28.731	5	1	Median	8188800000	4078800000	4110000000	697370000	335630000	361740000	1884000000	1012700000	871260000	3526600000	1715300000	1811300000	2080800000	1015200000	1065700000	48379	870	45548	291507;291508;291509;291510;291511;291512;291513;291514;291515;291516;291517;291518;291519;291520;291521;291522	391218;391219;391220;391221;391222;391223;391224;391225;391226;391227;391228;391229;391230;391231;391232;391233;391234;391235;391236;391237;391238;391239;391240	391226			23	
STVLGLPQHVQK	1	Unmodified	1305.7405	0.74048484	5196	Q9P206	KIAA1522	Uncharacterized protein KIAA1522	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		37.42	37.42	3	0.00013533	32839	160511_QHF_FH_JSI11i_3	69.451	60.63			1.3719	1.2345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3719	1.2345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	52542000	25442000	27101000	0	0	0	0	0	0	52542000	25442000	27101000	0	0	0	48380	5196	45549	291523	391241	391241			1	
STVLQQQYNR	0	Unmodified	1235.6258	0.62584901	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.39	3	4	2				3	5		3	2	6	6	24.412	21.031	2	3.9534E-44	17537	160511_QHF_FH_JSI11i_2	220.72	182.43			0.99495	0.99549	9.4227	12	0	Median	1.3584	1.1901	12.549	3	0	Plateau	0.83277	1.0134	3.9638	2	0	Median	1.0016	0.99493	5.1886	3	0	Median	0.93965	0.9922	12.65	4	0	Median	722030000	367930000	354110000	160990000	72062000	88931000	111490000	62116000	49372000	218720000	110370000	108350000	230830000	123380000	107450000	48381	5616	45550	291524;291525;291526;291527;291528;291529;291530;291531;291532;291533;291534;291535;291536;291537;291538;291539;291540	391242;391243;391244;391245;391246;391247;391248;391249;391250;391251;391252;391253;391254;391255;391256;391257;391258;391259;391260;391261;391262;391263;391264;391265;391266	391256			24	
STVLTPMFVETQASQGTLQTR	0	Unmodified	2294.1576	0.15764621	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.797	9	8	6							5	5	6	7	80.787	80.225	2;3	9.7324E-58	71432	160511_QHF_FH_JSI10i_2	216.16	206.79			1.141	1.1352	9.845	22	3	Median	1.3987	1.1616	6.4277	4	1	Median	0.91361	1.1191	7.979	5	0	Median	1.2174	1.196	12.181	6	0	Median	1.0942	1.1647	7.4533	7	2	Median	3058100000	1444100000	1614000000	585130000	239700000	345440000	537150000	286580000	250570000	1082100000	501830000	580220000	853760000	416010000	437740000	48382	2094	45551	291541;291542;291543;291544;291545;291546;291547;291548;291549;291550;291551;291552;291553;291554;291555;291556;291557;291558;291559;291560;291561;291562;291563	391267;391268;391269;391270;391271;391272;391273;391274;391275;391276;391277;391278;391279;391280;391281;391282;391283;391284;391285;391286;391287;391288;391289;391290;391291;391292;391293;391294;391295;391296;391297;391298;391299;391300;391301;391302;391303;391304;391305;391306;391307;391308;391309	391303			42	
STVNCSTTPVAER	0	Unmodified	1420.6616	0.66164217	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	18.212	17.815	2	3.2401E-06	15328	160511_QHF_FH_JSI12i_1	122.51	90.096			1.2688	1.0483	18.389	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.2688	1.462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.174	1.1957	20.169	2	2	Median	68583000	35457000	33126000	0	0	0	17302000	6358000	10944000	0	0	0	51281000	29099000	22182000	48383	4284	45552	291564;291565;291566	391310;391311;391312	391310			3	
STVNEKPK	2	Acetyl (K)	943.49746	0.4974606	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.9	0.781					3	3	2				3	2	3	13.64	6.0003	2	7.4409E-24	4658	160513_QHF_FH_JSI10Kac_2	187	98.058			1.0031	1.0224	27.518	8	0	Median	NaN	NaN	NaN	0	0	Median	0.58364	0.68347	5.0874	3	0	Median	1.0999	1.0779	11.962	2	0	Median	1.0135	1.124	7.3144	3	0	Plateau	628240000	348540000	279700000	0	0	0	201950000	128970000	72984000	179710000	94958000	84754000	246570000	124610000	121960000	48384	3063	45553	291567;291568;291569;291570;291571;291572;291573;291574	391313;391314;391315;391316;391317;391318;391319;391320;391321;391322;391323;391324;391325;391326	391319	2753		14	
STVPGHAGR	0	Unmodified	880.45151	0.45151346	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		6	7					1	7	6	5	5	5	5.2598	1.9566	2;3	3.1742E-05	2674	160511_QHF_FH_JSI9i_2	101.64	55.273			1.0499	1.013	14.152	20	1	Median	1.3133	1.1041	14.102	6	0	Median	0.81572	0.98148	14.255	5	0	Median	1.0293	1.014	9.3546	5	0	Median	0.83342	0.86674	9.4156	4	1	Median	6772200000	3445200000	3327000000	1151700000	492380000	659280000	1685000000	892660000	792360000	1570200000	746800000	823450000	2365200000	1313300000	1051900000	48385	771	45554	291575;291576;291577;291578;291579;291580;291581;291582;291583;291584;291585;291586;291587;291588;291589;291590;291591;291592;291593;291594;291595	391327;391328;391329;391330;391331;391332;391333;391334;391335;391336;391337;391338;391339;391340;391341;391342;391343;391344;391345;391346;391347;391348;391349;391350	391337			23	
STVPTDFSSAK	1	Unmodified	1138.5506	0.55061839	2275	Q08722	CD47	Leukocyte surface antigen CD47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	32.08	31.468	2	6.4514E-05	27522	160511_QHF_FH_JSI9i_1	93.096	74.656			0.83166	0.97705	41.291	3	1	Plateau	0.85017	0.7153	NaN	1	0	Median	0.83166	0.97705	NaN	1	0	Median	1.6806	1.6211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	233140000	122720000	110420000	66378000	27234000	39144000	93230000	62148000	31082000	73531000	33337000	40194000	0	0	0	48386	2275	45555	291596;291597;291598;291599;291600	391351;391352;391353;391354;391355;391356;391357	391356			7	
STVQVCNSILCPKTGREK	2	Unmodified	2076.0456	0.045593344	4210	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				101.81	101.74	3	0.060854	89590	160511_QHF_FH_JSI9i_2	34.928	10.886			0.092774	0.079257	NaN	1	1	Median	0.092774	0.079257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	369330000	355760000	13570000	369330000	355760000	13570000	0	0	0	0	0	0	0	0	0	48387	4210	45556	291601	391358	391358			1	
STVTLSWK	1	Unmodified	920.49673	0.49673232	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	54.727	45.515	2	0.015967	23684	160513_QHF_FH_JSI12Kac_6	56.659	33.768			1.0648	0.88392	NaN	1	1	Median	1.0648	0.88392	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5987700	3259000	2728700	5987700	3259000	2728700	0	0	0	0	0	0	0	0	0	48388	4575	45557	291602;291603	391359;391360	391360			2	
STVTLSWKPVQK	2	Unmodified	1372.7715	0.77145062	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	52.167	47.077	2;3	8.6359E-41	41234	160511_QHF_FH_JSI11i_3	230.65	204.61			1.0221	0.97107	14.942	16	1	Median	1.0816	0.87687	20.742	4	1	Median	0.81393	0.95291	6.9714	4	0	Median	1.0576	0.97648	12.309	4	0	Median	1.0228	1.0496	10.014	4	0	Median	4052900000	1892100000	2160800000	960640000	424580000	536060000	960590000	487090000	473490000	962950000	456620000	506330000	1168800000	523810000	644940000	48389	4575	45558	291604;291605;291606;291607;291608;291609;291610;291611;291612;291613;291614;291615;291616;291617;291618;291619	391361;391362;391363;391364;391365;391366;391367;391368;391369;391370;391371;391372;391373;391374;391375;391376;391377;391378;391379;391380;391381;391382;391383;391384;391385;391386;391387;391388;391389;391390;391391	391363			31	
STVTVNTIDLGNK	1	Unmodified	1360.7198	0.71980898	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.941	49.276	2	5.4144E-05	44766	160511_QHF_FH_JSI12i_1	76.682	1.9011			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48390	2546	45559	291620	391392	391392			1	
STVVKAISGVHTVR	1	Acetyl (K)	1494.8518	0.85182621	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	1	0	0	1			By MS/MS		16	0									1			1		52.953	43.228	2	0.003397	23425	160513_QHF_FH_JSI11Kac_6	94.122	77.49			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48391	1508	45560	291621	391393	391393	1538		1	
STVVPVPYEK	1	Unmodified	1117.6019	0.60192568	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	41.015	40.235	2	2.728E-09	40364	160511_QHF_FH_JSI9i_1	127.4	117.81			0.94809	0.9573	62.544	6	0	Median	0.56904	0.46866	99.439	2	0	Median	0.61993	0.72815	52.095	2	0	Median	0.98706	0.96799	NaN	1	0	Median	1.1037	1.1745	NaN	1	0	Median	1482500000	776850000	705610000	363090000	186740000	176350000	393090000	227520000	165560000	392890000	185070000	207810000	333390000	177510000	155880000	48392	2087	45561	291622;291623;291624;291625;291626;291627	391394;391395;391396;391397;391398;391399;391400;391401;391402;391403;391404;391405	391402			12	
STVVPVPYEKMLR	1	Acetyl (K)	1559.8381	0.83814998	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.432	71.895	2	0.045058	38068	160513_QHF_FH_JSI11Kac_5	50.108	33.082			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1849400	1849400	0	0	0	0	0	0	0	1849400	1849400	0	0	0	0	48393	2087	45562	291628	391406	391406			1	
STVWQVR	0	Unmodified	874.4661	0.4661009	4178	Q96MX6	WDR92	WD repeat-containing protein 92	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	29.833	29.806	2	0.052111	25808	160511_QHF_FH_JSI11i_3	42.474	13.136			1.0593	1.0335	18.319	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95876	0.9079	NaN	1	0	Median	1.1704	1.1764	NaN	1	0	Median	61995000	30482000	31513000	0	0	0	0	0	0	25826000	13824000	12002000	36170000	16658000	19511000	48394	4178	45563	291629;291630	391407	391407			1	
STYEEFVEGTGSLDEDTSLPEGLK	1	Unmodified	2602.181	0.18100324	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.813	87.337	3	0.023891	79526	160511_QHF_FH_JSI12i_1	25.15	21.935			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48395	5640	45564	291631	391408	391408			1	
STYEQVDLIGK	1	Unmodified	1251.6347	0.63468237	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.89	6.17	4		1			1	3			1	3	1	4	53.678	48.932	2	6.0021E-30	44198	160511_QHF_FH_JSI10i_1	193.52	176.85			0.92407	0.91554	13.547	7	1	Median	1.0804	0.89472	NaN	1	0	Median	0.76821	0.90404	4.3808	2	0	Median	0.93885	0.91554	NaN	1	0	Median	0.92407	0.99062	20.638	3	1	Median	2447600000	1341300000	1106300000	498190000	256610000	241590000	548760000	320520000	228240000	795540000	432180000	363350000	605140000	332000000	273150000	48396	4940	45565	291632;291633;291634;291635;291636;291637;291638;291639;291640	391409;391410;391411;391412;391413;391414;391415;391416;391417	391414			9	
STYESNTK	1	Unmodified	928.41379	0.41379055	1375	P31483	TIA1	Nucleolysin TIA-1 isoform p40	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	5.0077	1.9054	2	0.00053249	2527	160511_QHF_FH_JSI12i_1	105.14	86.36			1.0233	1.007	26.184	5	0	Median	0.79993	0.66065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1881	1.1698	21.196	2	0	Median	0.96728	1.0354	7.7739	2	0	Median	338240000	163670000	174570000	67247000	28503000	38744000	0	0	0	120300000	58731000	61571000	150690000	76438000	74255000	48397	1375	45566	291641;291642;291643;291644;291645	391418;391419;391420;391421;391422	391418			5	
STYGVTK	1	Unmodified	754.38612	0.38611924	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.25	0.433	3	1								2		1	1	10.265	9.8145	2	0.023222	7708	160511_QHF_FH_JSI12i_1	55.676	38.749			0.70687	0.64812	17.488	4	0	Median	0.88759	0.74339	23.409	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67489	0.66678	NaN	1	0	Median	0.57863	0.58881	NaN	1	0	Median	531990000	306080000	225920000	153240000	78519000	74717000	0	0	0	202310000	118510000	83800000	176450000	109050000	67400000	48398	2785	45567	291646;291647;291648;291649	391423	391423			1	
STYGWTANMER	0	Unmodified	1314.5663	0.56628523	2872	Q58FG1	HSP90AA4P	Putative heat shock protein HSP 90-alpha A4	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	42.011	41.048	2	0.010948	35292	160511_QHF_FH_JSI11i_2	68.893	63.112			0.97843	1.0923	31.044	3	0	Plateau	0.72503	0.61322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81866	0.81609	NaN	1	0	Median	1.0157	1.1402	NaN	1	0	Median	90531000	46508000	44023000	23297000	10454000	12843000	0	0	0	30846000	17262000	13584000	36388000	18792000	17596000	48399	2872	45568	291650;291651;291652	391424	391424			0	
STYIESSTK	1	Unmodified	1014.487	0.4869555	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	6	2					2				2		1	1	15.743	9.1046	2	0.00074788	10591	160511_QHF_FH_JSI12i_1	85.862	64.334			0.32548	0.28587	130.39	4	3	Median	1.3725	1.0945	122.47	2	1	Median	NaN	NaN	NaN	0	0	Median	0.17919	0.17751	NaN	1	1	Median	0.14708	0.15266	NaN	1	1	Median	671630000	501070000	170560000	129050000	37049000	91998000	0	0	0	24253000	20218000	4034900	518330000	443800000	74531000	48400	751	45569	291653;291654;291655;291656	391425;391426;391427;391428	391425			4	
STYMETYVYFYR	0	Unmodified	1621.7123	0.71228076	1644	P49184	DNASE1L1	Deoxyribonuclease-1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			78.963	71.774	2	4.7777E-07	38233	160513_QHF_FH_JSI9Kac_6	131.28	113.55			0.84937	0.84718	10.594	2	1	Median	1.0696	0.91309	NaN	1	1	Median	0.67448	0.78604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71855000	37754000	34101000	21586000	7192000	14394000	50269000	30562000	19707000	0	0	0	0	0	0	48401	1644	45570	291657;291658	391429;391430	391429			2	
STYNHLSSWLTDAR	0	Unmodified	1649.7798	0.77978347	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		6.17	5.68		1	8						3	5	6	1		61.788	57.883	2;3	5.6479E-05	48536	160511_QHF_FH_JSI10i_3	77.746	40.152			1.3218	1.2863	21.473	9	3	Median	1.6374	1.3798	8.7972	3	1	Plateau	0.9597	1.0979	27.582	5	2	Median	1.3218	1.2988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	384990000	176860000	208130000	107240000	40757000	66485000	257570000	127230000	130340000	20182000	8880100	11302000	0	0	0	48402	1938	45571	291659;291660;291661;291662;291663;291664;291665;291666;291667;291668;291669;291670	391431;391432;391433;391434;391435;391436;391437;391438;391439;391440;391441;391442;391443;391444	391433			14	
STYPRPHEYLSPADLPK	1	Unmodified	1969.9898	0.98977625	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								4	1	1	51.048	50.062	3;4	2.5607E-08	43670	160511_QHF_FH_JSI11i_3	136.34	129.45			0.92872	0.96237	12.419	4	2	Median	NaN	NaN	NaN	0	0	Median	0.91722	1.0254	11.589	3	2	Median	0.94037	0.86655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	203830000	114740000	89088000	0	0	0	118710000	60882000	57826000	69208000	37947000	31262000	15910000	15910000	0	48403	5250	45572	291671;291672;291673;291674;291675;291676	391445;391446;391447;391448;391449;391450;391451;391452;391453;391454;391455	391449			11	
STYVTEVR	0	Unmodified	953.48181	0.48181054	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	5.94		4					3			1	2	2	2	23.601	18.995	2	0.00021531	16336	160511_QHF_FH_JSI9i_2	119.29	40.175			0.87791	0.91485	8.2387	6	2	Median	1.0925	0.94406	NaN	1	0	Median	0.63996	0.76238	NaN	1	1	Median	0.93954	0.93155	3.4901	2	0	Median	0.84944	0.91485	0.55848	2	1	Median	290730000	163330000	127400000	79325000	36566000	42758000	4205600	2417900	1787700	120600000	71899000	48700000	86599000	52449000	34151000	48404	3328	45573	291677;291678;291679;291680;291681;291682;291683	391456;391457;391458;391459;391460;391461;391462;391463;391464;391465;391466	391462			11	
SVAAIHPSLEIPMLIPK	1	Unmodified	1815.0328	0.032827038	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	96.454	96.292	3	1.3912E-06	85350	160511_QHF_FH_JSI10i_2	99.069	94.588			1.2211	1.224	36.108	6	4	Median	0.75488	0.65205	NaN	1	1	Median	0.57971	0.69625	NaN	1	0	Median	1.3269	1.2653	4.6965	2	2	Median	1.3054	1.3857	17.541	2	1	Median	259780000	133450000	126330000	43072000	22950000	20122000	63319000	38077000	25242000	94594000	41913000	52681000	58792000	30508000	28284000	48405	402	45574	291684;291685;291686;291687;291688;291689;291690	391467;391468;391469;391470;391471;391472;391473;391474;391475	391474			9	
SVAEGLSGSLVQEPFQLATEK	1	Unmodified	2189.1216	0.12157828	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	93.232	92.473	2	6.6066E-07	79778	160511_QHF_FH_JSI12i_2	103.85	89.823			1.1481	1.197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1481	1.197	NaN	1	1	Median	6814000	1837200	4976700	0	0	0	0	0	0	0	0	0	6814000	1837200	4976700	48406	5412	45575	291691	391476	391476			1	
SVAFAAPR	0	Acetyl (Protein N-term)	859.4552	0.45520186	2680	Q15532	SS18	Protein SSXT	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.715	48.035	2	0.00080621	43195	160511_QHF_FH_JSI10i_1	84.244	59.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48407	2680	45576	291692;291693;291694;291695	391477;391478;391479;391480;391481	391480			5	
SVAGGEIRGDTGGEDTAAPGR	0	Acetyl (Protein N-term)	2013.9352	0.9351745	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	35.918	35.371	2;3	5.4454E-18	30964	160511_QHF_FH_JSI9i_1	138.57	128.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48408	4760	45577	291696;291697;291698;291699;291700;291701	391482;391483;391484;391485;391486;391487	391487			6	
SVAGGFVYTYK	1	Unmodified	1190.5972	0.59717465	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.62		4	3					2	4	4	4	2	3	55.149	50.086	2	3.8232E-11	27478	160513_QHF_FH_JSI10Kac_6	157.24	124.4			1.125	1.1028	20.427	13	1	Median	1.0862	0.91914	20.077	4	0	Median	0.9104	1.0682	22.426	4	1	Median	1.1658	1.1358	14.918	2	0	Median	1.1851	1.2494	0.97026	3	0	Median	3097600000	1515900000	1581700000	730830000	356780000	374050000	920450000	459510000	460940000	733990000	355940000	378040000	712360000	343710000	368660000	48409	2665	45578	291702;291703;291704;291705;291706;291707;291708;291709;291710;291711;291712;291713;291714	391488;391489;391490;391491;391492;391493;391494;391495;391496;391497;391498;391499;391500;391501;391502;391503;391504;391505;391506;391507;391508;391509;391510	391510			23	
SVAGIGQTGK	1	Unmodified	916.49779	0.49779495	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	1	3	3	18.6	15.482	2	0.00087087	12845	160511_QHF_FH_JSI9i_1	69.276	33.918			0.98838	1.0657	53.9	8	4	Median	0.78571	0.65353	NaN	1	0	Median	0.91484	1.0669	NaN	1	0	Median	1.0678	1.0645	88.718	3	2	Median	1.2966	1.3794	29.399	3	2	Median	655450000	386120000	269320000	77318000	44955000	32363000	155710000	96747000	58963000	297660000	189460000	108200000	124760000	54959000	69800000	48410	3749	45579	291715;291716;291717;291718;291719;291720;291721;291722	391511;391512;391513;391514;391515;391516;391517;391518;391519;391520;391521;391522	391519			12	
SVAGLKK	2	Acetyl (Protein N-term)	743.45414	0.45413923	4331;4332	Q99961;Q99963;Q99962	SH3GL1;SH3GL3;SH3GL2	Endophilin-A2;Endophilin-A3;Endophilin-A1	no	no	0	1	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	19.092	18.515	2	0.0076463	15577	160511_QHF_FH_JSI9i_1	58.194	40.829			0.80195	0.78164	148.64	3	2	Median	8.5985	7.3095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80195	0.78164	NaN	1	0	Median	0.41631	0.43793	NaN	1	1	Median	243450000	165170000	78275000	32494000	7054000	25440000	0	0	0	53095000	27139000	25955000	157860000	130980000	26880000	48411	4331;4332	45580	291723;291724;291725	391523;391524	391524			2	
SVAGLKK	2	Acetyl (K);Acetyl (Protein N-term)	785.4647	0.46470391	4331;4332	Q99961;Q99963;Q99962	SH3GL1;SH3GL3;SH3GL2	Endophilin-A2;Endophilin-A3;Endophilin-A1	no	no	1	1	0	1		By MS/MS			11.5	0.5				1	1						2			47.812	38.588	2	0.0042487	15911	160513_QHF_FH_JSI10Kac_1	52.683	43.911			0.82012	0.94023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82012	0.94023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11910000	6219100	5691100	0	0	0	11910000	6219100	5691100	0	0	0	0	0	0	48412	4331;4332	45580	291726;291727	391525;391526	391526	3135		2	
SVAHGQAPEMPLVK	1	Unmodified	1462.7602	0.76023401	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	40.132	39.171	3	0.00048233	34326	160511_QHF_FH_JSI10i_2	44.925	34.874			0.82677	0.86592	17.485	4	1	Median	0.79239	0.70964	NaN	1	1	Median	0.85913	1.0454	NaN	1	0	Median	0.79562	0.79038	NaN	1	0	Median	0.8886	0.94868	NaN	1	0	Median	194550000	107550000	87000000	36420000	21683000	14736000	51145000	29608000	21537000	66029000	34710000	31319000	40955000	21547000	19408000	48413	2784	45581	291728;291729;291730;291731;291732	391527;391528;391529;391530;391531;391532;391533	391531			7	
SVAHLPWK	1	Unmodified	936.51814	0.51813647	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.82	0.386		2	9							3	3	3	2	37.317	36.572	2;3	0.00034892	30549	160511_QHF_FH_JSI10i_3	81.548	70.675			0.72022	0.80958	69.581	11	1	Median	1.1354	0.89223	12.259	3	0	Plateau	0.67828	0.76983	2.5229	3	0	Plateau	1.2092	1.1441	130.87	3	1	Plateau	0.71975	0.72571	1.5294	2	0	Median	2907700000	1472600000	1435100000	621150000	292510000	328640000	526510000	281020000	245480000	658620000	278680000	379940000	1101400000	620420000	481030000	48414	4153	45582	291733;291734;291735;291736;291737;291738;291739;291740;291741;291742;291743	391534;391535;391536;391537;391538;391539;391540;391541;391542;391543;391544;391545;391546;391547;391548;391549;391550;391551;391552	391539			19	
SVAHLPWKAFTYK	2	Acetyl (K)	1588.8402	0.84019889	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.942	69.628	3	8.649E-05	38192	160513_QHF_FH_JSI11Kac_6	93.478	81.118			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93575000	93575000	0	0	0	0	0	0	0	93575000	93575000	0	0	0	0	48415	4153	45583	291744	391553	391553	3056		1	
SVAIITAFLMK	1	Unmodified	1192.689	0.68896654	5438	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		13.8	4.84			1						5	3	2	1		94.195	87.741	2	1.5653E-08	49491	160513_QHF_FH_JSI10Kac_6	120.68	109.53			1.4208	1.3778	115.09	6	5	Median	1.0459	0.8522	127.21	3	2	Median	0.80782	0.94376	121.45	2	2	Median	3.9577	3.731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	603380000	295970000	307410000	199760000	103760000	96003000	251100000	134180000	116920000	152510000	58022000	94492000	0	0	0	48416	5438	45584	291745;291746;291747;291748;291749;291750	391554;391555;391556;391557;391558;391559	391559			5	
SVAIITAFLMK	1	Oxidation (M)	1208.6839	0.68388117	5438	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.781	80.837	2	0.00011664	44524	160513_QHF_FH_JSI9Kac_6	96.89	62.358			0.2773	0.23594	181.05	3	3	Median	0.2773	0.23594	NaN	1	1	Median	3.9151	4.7135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.16836	0.18088	NaN	1	1	Median	100650000	62969000	37684000	44016000	32770000	11247000	27703000	4266300	23437000	0	0	0	28933000	25933000	3000400	48417	5438	45584	291751;291752;291753	391560;391561;391562	391560		2658	3	
SVAKLQDER	1	Acetyl (K)	1086.5669	0.56693715	209	O14818;Q8TAA3	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				1	2	2	30.698	21.779	2	0.0018155	13899	160513_QHF_FH_JSI11Kac_4	86.898	42.581			0.71354	0.76957	42.906	5	0	Median	NaN	NaN	NaN	0	0	Median	0.93199	1.1214	NaN	1	0	Median	0.57149	0.55368	11.134	2	0	Median	0.97024	1.0511	44.086	2	0	Median	26197000	13036000	13161000	0	0	0	7895500	2532400	5363100	8556000	5262600	3293400	9745700	5241500	4504200	48418	209	45585	291754;291755;291756;291757;291758	391563;391564;391565;391566;391567;391568;391569	391567	114		7	
SVANPAFLK	1	Unmodified	945.52837	0.5283668	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	41.9	40.934	2	0.0017874	35226	160511_QHF_FH_JSI12i_2	69.423	36.583			0.90946	1.0948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90946	1.0948	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56742000	26845000	29897000	0	0	0	56742000	26845000	29897000	0	0	0	0	0	0	48419	4284	45586	291759;291760;291761	391570;391571;391572	391570			3	
SVAQQASLTEQR	0	Unmodified	1316.6684	0.66844211	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		20.285	20.092	2	1.2923E-05	17265	160511_QHF_FH_JSI10i_1	117.79	82.281			1.0314	1.1007	5.4022	2	2	Median	NaN	NaN	NaN	0	0	Median	0.9777	1.1435	NaN	1	1	Median	1.088	1.0594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90828000	46144000	44684000	0	0	0	47590000	26264000	21326000	43238000	19879000	23359000	0	0	0	48420	1769	45587	291762;291763;291764	391573;391574;391575	391574			3	
SVAQYTGGIAK	1	Unmodified	1093.5768	0.57677356	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	5.94		4					3			1	2	2	2	38.61	33.749	2	1.1518E-05	28823	160511_QHF_FH_JSI11i_2	107.55	68.25			1.0306	1.0558	24.881	7	0	Median	1.0452	0.91407	NaN	1	0	Median	0.86698	1.0171	15.745	2	0	Median	1.0082	1.0107	6.1745	2	0	Median	1.3103	1.4297	38.018	2	0	Median	531790000	266810000	264980000	125260000	59994000	65264000	125270000	79184000	46086000	168540000	82064000	86473000	112730000	45567000	67160000	48421	2299	45588	291765;291766;291767;291768;291769;291770;291771	391576;391577;391578;391579;391580;391581;391582;391583;391584;391585;391586	391583			11	
SVASDVPEELDFLVPK	1	Unmodified	1743.8931	0.8930819	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	100.72	100.64	2	1.715E-05	91226	160511_QHF_FH_JSI10i_1	116.51	92.524			0.7129	0.77543	20.689	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79471	0.89759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6395	0.6699	NaN	1	1	Median	64862000	42634000	22228000	0	0	0	34457000	20200000	14257000	0	0	0	30405000	22434000	7970800	48422	2584	45589	291772;291773	391587;391588	391588			2	
SVASGGWQEPENPHTQR	0	Unmodified	1878.8609	0.86088734	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	1	4		26.494	25.919	3	5.1672E-11	22022	160511_QHF_FH_JSI11i_3	119.47	110.93			1.2102	1.0425	4.2996	4	2	Linear	1.3327	1.0999	NaN	1	0	Median	0.86853	1.0468	NaN	1	0	Median	1.2102	1.142	2.0926	2	2	Median	NaN	NaN	NaN	0	0	Median	161400000	79189000	82210000	25750000	10297000	15454000	56907000	32611000	24297000	78741000	36281000	42460000	0	0	0	48423	5348	45590	291774;291775;291776;291777;291778;291779	391589;391590;391591;391592;391593;391594;391595;391596	391589			8	
SVASLFDAFHAGFHK	1	Unmodified	1632.8049	0.80487601	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.06			15						7	9	4	4	5	84.222	80.991	3;4	1.497E-25	41431	160513_QHF_FH_JSI10Kac_6	160.78	132.69			1.0012	0.9075	22.25	21	6	Median	1.0413	0.87931	19.429	9	2	Median	0.82393	0.95952	18.579	4	1	Median	1.047	0.97632	24.215	4	2	Median	0.96101	1.0239	34.622	4	1	Median	1438600000	723430000	715150000	500210000	245610000	254600000	423220000	221300000	201920000	234990000	126140000	108850000	280150000	130370000	149780000	48424	2884	45591	291780;291781;291782;291783;291784;291785;291786;291787;291788;291789;291790;291791;291792;291793;291794;291795;291796;291797;291798;291799;291800;291801	391597;391598;391599;391600;391601;391602;391603;391604;391605;391606;391607;391608;391609;391610;391611;391612;391613;391614;391615;391616;391617;391618;391619;391620;391621;391622;391623;391624;391625;391626;391627;391628	391628			32	
SVASSQPAKPTK	2	Unmodified	1199.651	0.65100113	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	7.4185	7.4674	2;3	8.4652E-08	4912	160511_QHF_FH_JSI12i_3	113.77	65.327			0.82631	0.81144	28.733	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94784	0.89158	2.9142	2	1	Median	0.58421	0.60512	31.084	2	1	Median	262140000	148640000	113500000	0	0	0	0	0	0	145370000	74878000	70487000	116770000	73758000	43012000	48425	2253	45592	291802;291803;291804;291805	391629;391630;391631;391632	391631			4	
SVATEER	0	Unmodified	790.3821	0.38209649	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.6	0.49	2	3									1	2	2	5.2841	4.9602	2	0.023222	2849	160511_QHF_FH_JSI11i_1	55.676	23.206			0.93838	0.91193	12.865	5	1	Median	NaN	NaN	NaN	0	0	Median	0.95659	1.1862	NaN	1	0	Median	0.92219	0.90928	0.41196	2	0	Median	0.90397	0.98685	13.791	2	1	Median	795160000	427080000	368080000	0	0	0	69464000	34228000	35236000	350290000	182750000	167540000	375400000	210100000	165300000	48426	732	45593	291806;291807;291808;291809;291810	391633;391634;391635	391633			3	
SVAVNPK	1	Unmodified	713.40719	0.40718903	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	10.005	9.6096	2	0.012437	7162	160511_QHF_FH_JSI11i_2	69.383	47.837			0.84131	0.92603	14.428	6	0	Median	1.2447	1.0127	NaN	1	0	Median	0.84035	0.99627	NaN	1	0	Median	0.84535	0.85238	8.6793	2	0	Median	0.74145	0.81204	21.619	2	0	Median	1106400000	568830000	537600000	182860000	78194000	104670000	260400000	141820000	118580000	319160000	161030000	158140000	344000000	187790000	156210000	48427	4989	45594	291811;291812;291813;291814;291815;291816	391636;391637;391638;391639;391640;391641	391641			6	
SVAVYGGGSMWEQAK	1	Unmodified	1568.7293	0.72932781	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								2	3	1	1	56.875	55.919	2	5.5424E-08	49393	160511_QHF_FH_JSI10i_2	99.011	68.461			1.2662	1.2493	17.363	5	3	Median	1.2385	1.0735	13.268	2	2	Median	1.2662	1.5689	NaN	1	1	Median	1.373	1.3419	NaN	1	0	Median	1.145	1.2493	NaN	1	0	Median	150300000	70432000	79870000	38168000	16644000	21524000	23947000	9499400	14448000	49191000	22646000	26545000	38997000	21643000	17354000	48428	3377	45595	291817;291818;291819;291820;291821;291822;291823	391642;391643;391644;391645;391646;391647;391648;391649	391649			8	
SVAWAPSGNLLATCSR	0	Unmodified	1688.8304	0.83043884	600	O76071	CIAO1	Probable cytosolic iron-sulfur protein assembly protein CIAO1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		70.868	69.405	2	0.00019764	58110	160511_QHF_FH_JSI10i_3	77.64	59.776			0.67267	0.79215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67267	0.79215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17229000	10103000	7125700	0	0	0	17229000	10103000	7125700	0	0	0	0	0	0	48429	600	45596	291824;291825	391650;391651	391650			2	
SVCTEAGMFAIR	0	Unmodified	1340.6217	0.62169161	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	60.718	59.801	2	2.9935E-07	51251	160511_QHF_FH_JSI12i_2	128.52	114.93			1.0358	1.1674	25.261	4	2	Median	1.3831	1.2032	NaN	1	1	Median	0.93812	1.1328	NaN	1	1	Median	0.72205	0.72956	NaN	1	0	Median	1.1437	1.2655	NaN	1	0	Median	399370000	204680000	194690000	48825000	22482000	26344000	90761000	44851000	45910000	133600000	75007000	58590000	126190000	62342000	63850000	48430	1449	45597	291826;291827;291828;291829;291830	391652;391653;391654;391655;391656	391652			5	
SVCTEAGMFAIR	0	Oxidation (M)	1356.6166	0.61660624	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	1	0		By MS/MS	By MS/MS		15	0								2			1	1		59.528	48.766	2	0.00099747	26770	160513_QHF_FH_JSI11Kac_5	76.465	64.617			1.3194	1.3748	4.4924	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2568	1.4192	NaN	1	0	Median	1.385	1.3318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4272500	2236200	2036300	0	0	0	2126900	1091300	1035600	2145600	1144800	1000700	0	0	0	48431	1449	45597	291831;291832	391657;391658;391659	391658		1123	3	
SVDDVLSHFAQR	0	Unmodified	1372.6735	0.67352749	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			64.176	63.002	3	1.4953E-11	55965	160511_QHF_FH_JSI10i_2	120.55	110			0.22722	0.26937	202.53	2	0	Median	NaN	NaN	NaN	0	0	Median	0.22722	0.26937	202.53	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74616000	49346000	25270000	0	0	0	74616000	49346000	25270000	0	0	0	0	0	0	48432	3382	45598	291833;291834	391660;391661	391661			1	
SVDEALR	0	Unmodified	788.40283	0.40283194	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.07	4	3	1			3	3	1		3	4	4	4	18.5	15.055	2	1.805E-20	9410	160513_QHF_FH_JSI12Kac_4	162.51	59.534			1.1333	1.1449	12.781	13	3	Median	1.5074	1.2784	16.918	3	1	Plateau	0.92442	1.1042	14.565	4	1	Median	1.2061	1.1846	12.455	3	0	Median	1.2514	1.3264	14.009	3	1	Plateau	21151000000	9824200000	11327000000	4531200000	1955700000	2575600000	6224000000	3153400000	3070600000	4857100000	1991700000	2865400000	5538800000	2723400000	2815400000	48433	1390	45599	291835;291836;291837;291838;291839;291840;291841;291842;291843;291844;291845;291846;291847;291848;291849	391662;391663;391664;391665;391666;391667;391668;391669;391670;391671;391672;391673;391674;391675;391676;391677;391678;391679;391680;391681	391678			20	
SVDETLR	0	Unmodified	818.4134	0.41339662	2249;2364	Q06830;Q13162	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.39	4	4	4			4	2			4	5	5	4	16.827	13.301	2	6.3887E-38	8621	160513_QHF_FH_JSI12Kac_3	192.28	92.897			1.0275	1.0854	11.97	18	0	Median	1.4224	1.2002	16.85	4	0	Median	0.91654	1.1091	12.477	5	0	Median	1.0745	1.0643	10.776	5	0	Median	0.94071	0.89553	8.8292	4	0	Linear	41027000000	20618000000	20409000000	9214100000	4601800000	4612300000	11168000000	5582300000	5585300000	10713000000	5157100000	5555900000	9932500000	5276900000	4655600000	48434	2249;2364	45600	291850;291851;291852;291853;291854;291855;291856;291857;291858;291859;291860;291861;291862;291863;291864;291865;291866;291867	391682;391683;391684;391685;391686;391687;391688;391689;391690;391691;391692;391693;391694;391695;391696;391697;391698;391699;391700;391701;391702;391703;391704;391705;391706;391707	391704			23	
SVDETLRLVQAFQFTDK	1	Unmodified	1996.0266	0.026555687	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	97.376	97.395	3	0.012168	84388	160511_QHF_FH_JSI12i_3	40.962	31.174			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48435	2249	45601	291868	391708	391708			1	
SVDETTQAMAFDGIIFQGQSLK	1	Unmodified	2385.1522	0.15222649	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	3	2	2	99.293	99.147	2;3	5.7358E-70	87709	160511_QHF_FH_JSI9i_1	190.87	177.74			0.9182	0.92385	11.552	8	1	Median	1.0783	0.87843	16.159	2	1	Median	0.77183	0.90853	19.236	2	0	Median	0.99365	0.97261	12.239	2	0	Median	0.86491	0.91261	6.6958	2	0	Median	674020000	349520000	324510000	97713000	40985000	56727000	261410000	144100000	117310000	153560000	74063000	79498000	161340000	90363000	70976000	48436	1274	45602	291869;291870;291871;291872;291873;291874;291875;291876;291877;291878	391709;391710;391711;391712;391713;391714;391715;391716;391717;391718;391719;391720;391721;391722;391723;391724;391725;391726;391727;391728;391729;391730;391731;391732	391732			24	
SVDEVFDEVVQIFDK	1	Unmodified	1767.8567	0.85669639	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.276		11	1							2	2	3	5	102.99	102.89	2;3	6.5431E-183	88774	160511_QHF_FH_JSI12i_2	292.35	259.12			0.88523	1.0251	16.774	11	7	Median	0.97469	0.82597	39.614	2	1	Median	0.86236	1.0772	3.07	2	1	Median	0.95436	0.9656	10.198	3	2	Median	0.90261	0.99535	9.188	4	3	Median	1193700000	644540000	549200000	84241000	40634000	43607000	174750000	95517000	79231000	709520000	384720000	324800000	225230000	123670000	101560000	48437	1342	45603	291879;291880;291881;291882;291883;291884;291885;291886;291887;291888;291889;291890	391733;391734;391735;391736;391737;391738;391739;391740;391741;391742;391743;391744;391745	391736			13	
SVDEVNYWDK	1	Unmodified	1253.5564	0.55643205	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	47.359	46.679	2	6.5802E-07	42150	160511_QHF_FH_JSI11i_1	121.6	106.45			1.0835	1.0581	20.648	4	1	Median	1.1599	0.94627	NaN	1	0	Median	1.0122	1.1832	NaN	1	0	Median	0.79632	0.78565	NaN	1	1	Median	1.1628	1.2202	NaN	1	0	Median	318520000	161480000	157040000	48018000	19883000	28135000	91859000	45073000	46787000	101380000	56009000	45370000	77263000	40518000	36745000	48438	1020	45604	291891;291892;291893;291894;291895	391746;391747;391748;391749;391750	391746			5	
SVDFHFR	0	Unmodified	906.4348	0.43480077	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	38.698	37.838	3	0.001886	32055	160511_QHF_FH_JSI12i_3	79.451	65.779			0.91519	0.95603	18.401	6	0	Median	1.2267	1.0159	37.841	2	0	Median	0.85034	0.98986	8.0967	2	0	Median	1.0429	0.97777	NaN	1	0	Median	0.8749	0.86008	NaN	1	0	Median	319470000	145720000	173750000	34732000	15501000	19231000	62348000	30756000	31592000	95530000	44923000	50607000	126860000	54538000	72325000	48439	5412	45605	291896;291897;291898;291899;291900;291901	391751;391752;391753;391754;391755;391756;391757;391758;391759;391760;391761	391761			11	
SVDGPIRLPIVDK	1	Unmodified	1407.8086	0.80856441	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.2		4	9					1		4	4	3	3	69.362	67.768	2;3	2.9556E-13	57002	160511_QHF_FH_JSI10i_3	127.37	99.512			0.94536	0.97682	10.43	12	0	Median	1.2844	1.0556	6.663	4	0	Median	0.81437	1.0042	9.3495	2	0	Median	0.95664	0.93709	3.9836	3	0	Median	0.80429	0.84845	10.508	3	0	Plateau	2476300000	1255700000	1220600000	555350000	235880000	319470000	400030000	222450000	177580000	1208600000	619810000	588750000	312330000	177560000	134770000	48440	1069	45606	291902;291903;291904;291905;291906;291907;291908;291909;291910;291911;291912;291913;291914;291915	391762;391763;391764;391765;391766;391767;391768;391769;391770;391771;391772;391773;391774;391775;391776;391777;391778;391779;391780;391781;391782;391783;391784;391785	391772			24	
SVDLAEYAPNLR	0	Unmodified	1346.683	0.68302954	3353	Q86W92	PPFIBP1	Liprin-beta-1	no	no	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		68.883	68.38	2	9.5171E-05	59789	160511_QHF_FH_JSI11i_2	104.22	77.779			0.82277	0.8078	19.84	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82277	0.8078	19.84	2	2	Median	NaN	NaN	NaN	0	0	Median	47176000	27955000	19221000	0	0	0	0	0	0	47176000	27955000	19221000	0	0	0	48441	3353	45607	291916;291917	391786;391787	391787			2	
SVDPDSPAEASGLR	0	Unmodified	1399.6579	0.657937	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.96	4					5				2	2	2	3	36.175	29.963	2	1.2005E-21	30121	160511_QHF_FH_JSI10i_1	178.67	159.42			0.99961	1.0412	22.171	9	4	Median	1.4977	1.2156	15.9	2	0	Median	0.69956	0.82093	33.617	2	1	Median	0.97681	0.94861	17.93	2	1	Median	0.99961	1.0372	17.973	3	2	Median	2026500000	971880000	1054600000	427500000	194070000	233430000	535860000	273810000	262050000	549670000	252700000	296970000	513460000	251310000	262160000	48442	198	45608	291918;291919;291920;291921;291922;291923;291924;291925;291926	391788;391789;391790;391791;391792;391793;391794;391795;391796;391797;391798;391799;391800	391794			13	
SVDPTLALSVYLR	0	Unmodified	1432.7926	0.79257999	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.5	2	7							2	2	2	4	3	93.517	91.462	2;3	1.0472E-24	43754	160513_QHF_FH_JSI9Kac_6	162.26	143.95			1.1484	1.1516	16.735	10	2	Median	1.2086	1.0458	7.8822	2	0	Median	0.96469	1.1549	9.5232	2	0	Median	1.4031	1.2745	5.3369	3	1	Plateau	0.99552	1.0964	23.775	3	1	Median	436940000	198090000	238850000	108690000	46996000	61695000	74440000	37791000	36649000	162800000	67520000	95283000	91009000	45783000	45227000	48443	2155	45609	291927;291928;291929;291930;291931;291932;291933;291934;291935;291936;291937	391801;391802;391803;391804;391805;391806;391807;391808;391809;391810;391811;391812	391812			12	
SVDPTQTEYQGMIEIVEEGDMK	1	Unmodified	2498.1193	0.11927138	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	97.82	97.651	2;3	2.7619E-06	88504	160511_QHF_FH_JSI12i_1	73.91	69.109			0.85172	0.99941	8.3772	3	1	Plateau	1.3827	1.1224	NaN	1	1	Median	0.85172	0.99941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9353	0.95385	NaN	1	0	Median	98394000	50429000	47965000	18561000	6215100	12346000	47173000	29380000	17794000	0	0	0	32659000	14834000	17825000	48444	543	45610	291938;291939;291940;291941	391813;391814;391815;391816	391813			4	
SVDQLEK	1	Unmodified	817.41815	0.41814765	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.479	15.021	2	0.055159	12724	160511_QHF_FH_JSI12i_1	41.892	6.7427			0.87101	0.82527	10.079	4	0	Median	0.99073	0.80991	NaN	1	0	Median	0.62346	0.7217	NaN	1	0	Median	0.94891	0.92056	NaN	1	0	Median	0.79951	0.84093	NaN	1	0	Median	592980000	285330000	307640000	127860000	53052000	74811000	152530000	83162000	69363000	167460000	72863000	94595000	145130000	76257000	68875000	48445	4623	45611	291942;291943;291944;291945	391817	391817			1	
SVDVILDDDLVDK	1	Unmodified	1444.7297	0.72970496	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.555	76.072	2	0.00010574	68975	160511_QHF_FH_JSI10i_1	111.52	81.715			1.2439	1.2583	17.936	4	4	Median	1.564	1.2501	NaN	1	1	Median	1.0628	1.2666	NaN	1	1	Median	1.4559	1.4455	NaN	1	1	Median	0.92678	0.94379	NaN	1	1	Median	460050000	201970000	258080000	41396000	17032000	24364000	183000000	87783000	95219000	102890000	39363000	63523000	132760000	57793000	74971000	48446	1254	45612	291946;291947;291948;291949	391818;391819;391820;391821	391820			4	
SVDYPCLLRPSYVLSGSAMNVVFSEDEMKK	2	Unmodified	3420.6404	0.64038473	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			90.156	84.436	4	7.7498E-20	48003	160513_QHF_FH_JSI10Kac_6	111.04	95.268			1.3473	1.5706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3473	1.5706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106370000	38507000	67859000	0	0	0	106370000	38507000	67859000	0	0	0	0	0	0	48447	1372	45613	291950	391822	391822			1	
SVEAAAELSAK	1	Unmodified	1074.5557	0.55570376	1186	P20962	PTMS	Parathymosin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.24	4	6	2			5	2	3	2	6	8	7	3	33.704	28.281	2	6.9001E-08	26524	160511_QHF_FH_JSI11i_1	125.75	95.183			0.85182	0.79915	44.191	24	12	Median	0.86796	0.72253	10.613	6	2	Median	0.72263	0.83445	47.94	8	4	Median	0.94176	0.92362	63.902	7	6	Median	0.87552	0.93291	16.527	3	0	Median	6559800000	3590500000	2969300000	1372400000	721430000	650980000	2046200000	1146300000	899910000	1360600000	736890000	623670000	1780600000	985860000	794740000	48448	1186	45614	291951;291952;291953;291954;291955;291956;291957;291958;291959;291960;291961;291962;291963;291964;291965;291966;291967;291968;291969;291970;291971;291972;291973;291974	391823;391824;391825;391826;391827;391828;391829;391830;391831;391832;391833;391834;391835;391836;391837;391838;391839;391840;391841;391842;391843;391844;391845;391846;391847;391848;391849;391850;391851;391852;391853;391854;391855;391856;391857;391858;391859;391860;391861	391825			39	
SVEAAAELSAKDLK	2	Acetyl (K)	1472.7722	0.77223848	1186	P20962	PTMS	Parathymosin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.943					1	7	3	4			6	3	6	68.307	58.169	2;3	4.5939E-30	30990	160513_QHF_FH_JSI10Kac_4	167.3	125.3			0.91943	1.04	40.628	6	0	Median	NaN	NaN	NaN	0	0	Median	1.2132	1.4332	39.119	3	0	Median	0.76638	0.76609	NaN	1	0	Median	0.83467	0.90298	24.325	2	0	Median	47555000	22224000	25331000	0	0	0	21552000	9456500	12095000	3894500	2160400	1734200	22108000	10607000	11501000	48449	1186	45615	291975;291976;291977;291978;291979;291980;291981;291982;291983;291984;291985;291986;291987;291988;291989	391862;391863;391864;391865;391866;391867;391868;391869;391870;391871;391872;391873;391874;391875;391876	391862	1042		15	
SVEAILEESTEK	1	Unmodified	1333.6613	0.66129105	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.338	61.024	2	6.78E-05	52315	160511_QHF_FH_JSI12i_2	106.29	75.727			1.2039	1.3525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2039	1.3525	NaN	1	1	Median	30145000	16131000	14015000	0	0	0	0	0	0	0	0	0	30145000	16131000	14015000	48450	4152	45616	291990	391877	391877			1	
SVEDRFDQQK	1	Unmodified	1250.5891	0.58912916	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.34	1	8	4					1		2	2	6	4	16.237	15.193	2;3	1.5465E-11	12599	160511_QHF_FH_JSI11i_3	155.06	123.12			1.138	1.0997	20.584	14	0	Median	1.1389	0.96864	7.2909	2	0	Median	0.82025	1.0057	3.7639	2	0	Median	1.1639	1.1745	29.259	6	0	Median	1.1535	1.2276	10.869	4	0	Median	1842200000	874000000	968180000	235380000	106740000	128650000	373130000	208490000	164640000	723010000	309030000	413970000	510670000	249750000	260920000	48451	1085	45617	291991;291992;291993;291994;291995;291996;291997;291998;291999;292000;292001;292002;292003;292004	391878;391879;391880;391881;391882;391883;391884;391885;391886;391887;391888;391889;391890;391891;391892;391893;391894;391895;391896;391897;391898	391880			21	
SVEEEEQVWR	0	Unmodified	1289.5888	0.58879481	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	38.481	37.896	2	5.2093E-14	34133	160511_QHF_FH_JSI11i_1	158.76	127.53			1.2035	1.2746	18.288	5	0	Median	1.088	0.90174	NaN	1	0	Median	1.2035	1.4233	NaN	1	0	Median	1.3437	1.3295	5.9582	2	0	Median	1.1759	1.1979	NaN	1	0	Median	470050000	183640000	286410000	56853000	18828000	38026000	133710000	48935000	84775000	166710000	67024000	99690000	112770000	48856000	63919000	48452	5213	45618	292005;292006;292007;292008;292009	391899;391900;391901;391902;391903;391904;391905	391900			7	
SVEEGKIDGIIDK	2	Unmodified	1401.7351	0.73512469	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2	0		2								1		1		45.166	44.392	3	0.045289	38843	160511_QHF_FH_JSI9i_2	28.11	16.527			1.3732	1.2625	17.562	2	1	Median	1.3211	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4273	1.4294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114750000	62997000	51757000	53606000	30472000	23134000	0	0	0	61148000	32525000	28623000	0	0	0	48453	3961	45619	292010;292011	391906;391907	391906			2	
SVEEISTLVQK	1	Unmodified	1231.666	0.66598249	3573	Q8N983	MRPL43	39S ribosomal protein L43, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.37	4					1	4			1	4	2	2	62.69	56.583	2	5.5045E-05	30524	160513_QHF_FH_JSI10Kac_4	101.11	61.957			1.1126	1.1859	67.171	8	7	Median	0.90713	0.74715	NaN	1	0	Median	1.0191	1.1979	71.441	3	3	Plateau	2.7518	2.6043	51.204	2	2	Median	1.1126	1.1859	25.337	2	2	Median	247400000	111740000	135660000	54167000	24629000	29538000	134820000	60572000	74250000	54013000	24307000	29706000	4397900	2236500	2161500	48454	3573	45620	292012;292013;292014;292015;292016;292017;292018;292019;292020	391908;391909;391910;391911;391912;391913;391914;391915;391916	391909			9	
SVEELLEAELLK	1	Unmodified	1371.7497	0.74971212	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	3	1	2	101.04	100.93	2	5.2497E-50	89388	160511_QHF_FH_JSI10i_2	188.28	149.97			1.0344	1.2249	17.012	4	3	Median	NaN	NaN	NaN	0	0	Median	0.85464	1.0227	17.216	2	1	Median	1.3353	1.2991	NaN	1	1	Median	1.1639	1.2989	NaN	1	1	Median	443230000	187610000	255620000	0	0	0	122250000	60916000	61336000	151620000	56208000	95417000	169350000	70483000	98871000	48455	3328	45621	292021;292022;292023;292024;292025;292026;292027	391917;391918;391919;391920;391921;391922;391923	391923			6	
SVEEPTQPGGTGLSDSR	0	Unmodified	1715.7962	0.7962214	4625	Q9H0B6	KLC2	Kinesin light chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.374	30.772	2	1.9289E-30	27420	160511_QHF_FH_JSI10i_1	233.37	214.24			1.145	1.1131	5.6482	4	0	Median	1.3168	1.0792	NaN	1	0	Median	0.96514	1.1361	NaN	1	0	Median	1.2594	1.2224	NaN	1	0	Median	1.041	1.0906	NaN	1	0	Median	314060000	138370000	175690000	61899000	26032000	35868000	93467000	40793000	52674000	81764000	37768000	43996000	76925000	33777000	43149000	48456	4625	45622	292028;292029;292030;292031	391924;391925;391926;391927;391928;391929;391930;391931	391929			8	
SVEETLR	0	Unmodified	832.42905	0.42904669	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.32	5.7	4	4	4			3	3	1		3	6	6	4	17.829	14.479	2	2.3852E-11	9541	160513_QHF_FH_JSI11Kac_4	152.63	69.346			0.97208	1.0186	10.845	19	2	Median	1.2135	0.98647	15.393	3	0	Median	0.83915	0.99217	6.6574	6	2	Median	1.0202	1.0083	12.44	6	0	Median	0.97296	1.0661	14.236	4	0	Median	9824500000	4913200000	4911200000	2045300000	841080000	1204200000	2792900000	1536000000	1256900000	2544700000	1226900000	1317700000	2441700000	1309200000	1132400000	48457	1338	45623	292032;292033;292034;292035;292036;292037;292038;292039;292040;292041;292042;292043;292044;292045;292046;292047;292048;292049;292050	391932;391933;391934;391935;391936;391937;391938;391939;391940;391941;391942;391943;391944;391945;391946;391947;391948;391949;391950;391951;391952;391953;391954;391955;391956	391944			25	
SVEEVASEIQPFLR	0	Unmodified	1602.8253	0.82533668	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	1	3	91.832	91.283	2;3	6.455E-117	78756	160511_QHF_FH_JSI12i_2	275.84	261.16			1.0474	1.0381	17.278	6	0	Median	1.1046	0.95573	NaN	1	0	Median	0.73635	0.91361	NaN	1	0	Median	1.0824	1.092	NaN	1	0	Median	0.89305	1.013	20.084	3	0	Plateau	413130000	208220000	204910000	79174000	38230000	40944000	68920000	33943000	34977000	112990000	54120000	58866000	152050000	81923000	70124000	48458	1085	45624	292051;292052;292053;292054;292055;292056	391957;391958;391959;391960;391961;391962;391963;391964;391965;391966	391959			10	
SVEFEEMDILDQGALQR	0	Unmodified	1978.9306	0.93060639	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.376	91.316	2	0.0063407	82859	160511_QHF_FH_JSI10i_1	66.989	39.84			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48459	2533	45625	292057	391967	391967			1	
SVEGLQEGSVLR	0	Unmodified	1272.6674	0.66737948	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.75	0.433	1	3										1	3	46.555	45.568	2	3.9751E-05	38984	160511_QHF_FH_JSI12i_2	112.13	79.809			1.2292	1.3313	33.317	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5251	2.5357	NaN	1	1	Median	1.2195	1.2913	4.3841	3	2	Median	252200000	112220000	139980000	0	0	0	0	0	0	61283000	26450000	34833000	190920000	85770000	105150000	48460	485	45626	292058;292059;292060;292061	391968;391969;391970;391971	391969			3	
SVEGWILFVTGVHEEATEEDIHDK	1	Unmodified	2739.3028	0.30279013	5678	Q9Y5S9	RBM8A	RNA-binding protein 8A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	92.934	84.876	3;4	5.0299E-272	49219	160513_QHF_FH_JSI10Kac_6	336	301.32			1.0932	1.0301	17.439	9	4	Median	1.196	1.0084	3.0139	2	0	Median	0.77911	0.90367	6.2137	3	0	Median	1.4273	1.3653	3.8217	2	2	Median	1.0494	1.1113	3.5851	2	2	Median	5936700000	3074700000	2862000000	1357500000	687900000	669620000	2743700000	1562600000	1181100000	1027100000	399800000	627310000	808330000	424340000	383990000	48461	5678	45627	292062;292063;292064;292065;292066;292067;292068;292069;292070	391972;391973;391974;391975;391976;391977;391978;391979;391980;391981;391982;391983;391984	391982			12	
SVEHDKASK	2	Acetyl (K)	1041.5091	0.50908792	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		6.0782	-1.5244	2	0.0059876	2186	160513_QHF_FH_JSI11Kac_4	71.349	60.935			0.34004	0.34139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34004	0.34139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4949400	3423200	1526300	0	0	0	0	0	0	4949400	3423200	1526300	0	0	0	48462	2730	45628	292071	391985	391985	2652		1	
SVEKEYTPIK	2	Acetyl (K)	1234.6445	0.64451877	5766				yes	yes	1	0	0	1				By MS/MS	15	0								1					1	66.441	55.715	2	0.025752	28045	160513_QHF_FH_JSI12Kac_5	58.676	19.528	+		0.01582	0.017038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.01582	0.017038	NaN	1	1	Median	3770200	3670100	100150	0	0	0	0	0	0	0	0	0	3770200	3670100	100150	48463	5766	45629	292072	391986	391986	3553		1	
SVELEDVK	1	Unmodified	917.47058	0.47057715	4524	Q9BXS5;Q9Y6Q5	AP1M1;AP1M2	AP-1 complex subunit mu-1;AP-1 complex subunit mu-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	5.94	3					4				1	1	3	2	33.976	29.976	2	0.0013208	26724	160511_QHF_FH_JSI12i_1	91.069	50.965			0.79845	0.78583	41.93	5	2	Median	0.62508	0.51277	NaN	1	0	Median	0.64331	0.74868	NaN	1	1	Median	1.1422	1.1209	50.227	2	1	Median	0.97563	1.0045	NaN	1	0	Median	599110000	331930000	267180000	220780000	132960000	87823000	2078200	1143200	934990	185190000	98009000	87176000	191070000	99819000	91246000	48464	4524	45630	292073;292074;292075;292076;292077;292078;292079	391987;391988;391989;391990;391991;391992	391987			6	
SVELEEALPVTTAEGMAK	1	Unmodified	1873.9343	0.93429479	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	79.172	78.642	2	1.359E-06	71658	160511_QHF_FH_JSI12i_1	125.61	103.08			0.93285	0.99706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93285	0.99706	NaN	1	0	Median	22856000	9025900	13830000	0	0	0	0	0	0	0	0	0	22856000	9025900	13830000	48465	3834	45631	292080	391993	391993			1	
SVELNPTQK	1	Unmodified	1014.5346	0.53457439	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.337	23.786	2	5.797E-05	21061	160511_QHF_FH_JSI12i_1	97.431	44.714			1.0887	1.0778	15.01	4	0	Linear	1.0104	0.83676	NaN	1	0	Median	1.003	1.1774	NaN	1	0	Median	1.0523	1.0404	NaN	1	0	Median	1.1028	1.1165	NaN	1	0	Median	374140000	180020000	194120000	88619000	42278000	46341000	68459000	34118000	34340000	101890000	45748000	56139000	115180000	57878000	57299000	48466	1685;31;191	45632	292081;292082;292083;292084	391994	391994			1	
SVEMHHEALSEALPGDNVGFNVK	1	Unmodified	2479.1802	0.18017257	2072;2231	P68104;Q05639	EEF1A1;EEF1A2	Elongation factor 1-alpha 1;Elongation factor 1-alpha 2	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	64.265	64.12	3;4	1.3196E-14	57027	160511_QHF_FH_JSI11i_3	113.49	109.76			1.0717	1.0258	9.1939	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1066	1.0258	5.9036	2	0	Median	1.0051	1.0527	14.56	2	1	Median	355280000	170500000	184780000	0	0	0	0	0	0	144420000	71189000	73235000	210860000	99311000	111550000	48467	2072;2231	45633	292085;292086;292087;292088	391995;391996;391997;391998;391999;392000	391996			6	
SVENLATATTTLTSLAQLLGK	1	Unmodified	2131.1736	0.17361385	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	102.6	102.56	2;3	4.6643E-27	89399	160511_QHF_FH_JSI12i_3	194.67	147.79			1.0823	0.97732	16.643	6	1	Median	1.1016	0.96461	NaN	1	0	Median	0.64869	0.80422	NaN	1	0	Median	0.97177	0.94872	6.0526	2	0	Median	1.196	1.2159	6.5162	2	1	Median	808910000	424930000	383970000	98855000	52740000	46116000	102080000	61717000	40360000	235370000	116800000	118570000	372600000	193680000	178930000	48468	4234	45634	292089;292090;292091;292092;292093;292094	392001;392002;392003;392004;392005;392006;392007;392008;392009	392009			9	
SVENLGVSYVK	1	Unmodified	1193.6292	0.62920306	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.5	6.5	2						2				1	2	1	53.162	47.397	2	0.0012494	43145	160511_QHF_FH_JSI12i_1	76.943	65.453			1.2505	1.2389	64.333	4	3	Median	NaN	NaN	NaN	0	0	Median	0.62229	0.7328	NaN	1	1	Median	1.2505	1.2389	12.162	2	1	Median	3.185	3.3819	NaN	1	1	Median	146770000	77843000	68930000	0	0	0	89243000	57340000	31902000	12507000	5955700	6551400	45024000	14547000	30477000	48469	1670	45635	292095;292096;292097;292098	392010;392011;392012;392013	392010			4	
SVEQEENK	1	Unmodified	961.43525	0.43525428	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.4756	2.1808	2	9.8969E-22	2986	160511_QHF_FH_JSI10i_1	190.51	130.49			1.089	1.1702	21.295	7	2	Median	1.0185	0.82844	NaN	1	0	Median	1.146	1.3613	16.941	2	1	Median	1.29	1.2628	19.053	2	1	Median	0.99743	1.0715	12.468	2	0	Median	1321500000	658770000	662730000	299780000	128390000	171390000	298760000	146860000	151900000	314280000	159040000	155240000	408690000	224490000	184200000	48470	3328	45636	292099;292100;292101;292102;292103;292104;292105	392014;392015;392016;392017;392018;392019;392020;392021;392022;392023	392018			10	
SVEQQVIGFSGLSDDK	1	Unmodified	1707.8315	0.83154427	5386	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	69.666	69.408	2	0.00023893	62907	160511_QHF_FH_JSI10i_1	74.678	59.413			0.68778	0.78406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68778	0.78406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21470000	11823000	9647400	0	0	0	21470000	11823000	9647400	0	0	0	0	0	0	48471	5386	45637	292106;292107	392024;392025	392025			2	
SVEQTLLPLVSQITTLINHK	1	Unmodified	2233.2682	0.26818294	5255	Q9UBT7	CTNNAL1	Alpha-catulin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	102.91	102.85	3	4.3851E-44	89592	160511_QHF_FH_JSI12i_3	210.17	203.5			0.99464	1.0905	3.1355	4	3	Median	NaN	NaN	NaN	0	0	Median	0.91222	1.0688	0.9702	2	2	Median	1.2016	1.1397	NaN	1	1	Median	1.0809	1.1051	NaN	1	0	Median	382690000	173100000	209600000	0	0	0	35557000	18238000	17319000	56807000	25888000	30919000	290330000	128970000	161360000	48472	5255	45638	292108;292109;292110;292111	392026;392027;392028;392029;392030	392030			5	
SVESSQSETLIVPR	0	Unmodified	1530.789	0.78895118	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.639	45.98	2	4.4463E-17	41787	160511_QHF_FH_JSI12i_1	132.17	104.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48473	2414	45639	292112	392031	392031			1	
SVESTSPEPSK	1	Unmodified	1146.5404	0.54044763	1141	P18583	SON	Protein SON	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5	5.66	4					2				2	1	1	2	11.746	9.8344	2	1.7279E-05	8244	160511_QHF_FH_JSI12i_1	104.52	68.579			0.9234	0.87055	20.562	5	2	Median	1.0727	0.88207	26.409	2	2	Median	0.61567	0.71652	NaN	1	0	Median	0.9234	0.87055	NaN	1	0	Median	1.1018	1.1177	NaN	1	0	Median	472140000	249730000	222410000	218900000	102950000	115950000	137160000	89987000	47178000	2542100	1276900	1265200	113530000	55513000	58015000	48474	1141	45640	292113;292114;292115;292116;292117;292118	392032;392033;392034;392035;392036;392037	392032			6	
SVESVPK	1	Unmodified	744.40177	0.4017693	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	2	1	1	12.73	10.921	2	0.020108	8961	160511_QHF_FH_JSI11i_1	57.281	4.5978			1.0751	1.0972	10.011	5	0	Median	1.2131	0.99893	NaN	1	0	Median	0.98231	1.1643	8.3952	2	0	Median	1.0751	1.0423	NaN	1	0	Median	1.1764	1.2484	NaN	1	0	Median	2880200000	1333800000	1546400000	726720000	345500000	381220000	776220000	375110000	401110000	659830000	280220000	379610000	717400000	332950000	384450000	48475	1006	45641	292119;292120;292121;292122;292123	392038;392039;392040;392041;392042;392043;392044	392038			7	
SVETGHLDGVFMHK	1	Unmodified	1555.7453	0.74531222	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	43.924	43.805	3	0.050761	37488	160511_QHF_FH_JSI12i_3	37.32	31.661			1.3138	1.2825	2.3598	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4178	1.3041	NaN	1	0	Median	1.2174	1.2613	NaN	1	0	Median	104790000	41963000	62823000	0	0	0	0	0	0	47033000	20140000	26893000	57753000	21823000	35930000	48476	733;3526	45642	292124;292125	392045	392045			0	
SVETLKEMIK	2	Acetyl (K)	1218.653	0.65297497	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		1	2	2	2	79.76	69.238	2	3.8777E-26	34505	160513_QHF_FH_JSI10Kac_5	187.64	135.16			0.41364	0.45135	59.735	5	2	Median	0.16147	0.1291	NaN	1	1	Median	0.41364	0.48586	NaN	1	1	Median	0.38709	0.38406	22.834	2	0	Median	0.52799	0.58038	NaN	1	0	Median	106440000	76792000	29644000	2491100	1968700	522330	10880000	6726300	4154100	87355000	63676000	23679000	5709200	4421300	1287900	48477	1055	45643	292126;292127;292128;292129;292130;292131;292132	392046;392047;392048;392049;392050;392051;392052;392053	392052	883;886		8	
SVETLKEMIK	2	Acetyl (K);Oxidation (M)	1234.6479	0.64788959	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							6	4			3	4	3	66.646	55.825	2	7.8785E-13	30346	160513_QHF_FH_JSI11Kac_5	159.4	109.99			0.44344	0.51635	61.128	9	0	Median	NaN	NaN	NaN	0	0	Median	1.017	1.2139	44.142	3	0	Plateau	0.36062	0.3553	41.266	4	0	Median	0.81628	0.89034	94.614	2	0	Median	132830000	82330000	50498000	0	0	0	39060000	21022000	18037000	83098000	55277000	27821000	10671000	6031100	4639700	48478	1055	45643	292133;292134;292135;292136;292137;292138;292139;292140;292141;292142	392054;392055;392056;392057;392058;392059;392060;392061;392062;392063	392061	883;886	684	9	
SVEVNFTESLLR	0	Unmodified	1392.7249	0.72489436	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	80.342	79.546	2	9.9785E-05	69911	160511_QHF_FH_JSI11i_2	103.87	74.563			0.99792	0.95269	8.3353	4	4	Median	1.0678	0.89728	NaN	1	1	Median	0.71272	0.88226	NaN	1	1	Median	1.0615	1.0406	NaN	1	1	Median	0.93818	1.0115	NaN	1	1	Median	168560000	88414000	80147000	22625000	12448000	10178000	47832000	26376000	21456000	55313000	26547000	28766000	42790000	23043000	19748000	48479	4445	45644	292143;292144;292145;292146	392064;392065;392066;392067	392066			4	
SVEYEGDLK	1	Unmodified	1038.487	0.4869555	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				28.011	26.743	2	0.013402	23261	160511_QHF_FH_JSI9i_1	56.434	31.49			1.0784	0.89166	102.07	2	2	Median	1.0784	0.89166	102.07	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169150000	75361000	93789000	169150000	75361000	93789000	0	0	0	0	0	0	0	0	0	48480	2320	45645	292147;292148	392068;392069	392069			2	
SVFALTNGIYPHK	1	Unmodified	1445.7667	0.76669959	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.65	5.99		4	18						9	8	9	7	7	67.242	64.063	2;3;4	1.4628E-99	53628	160511_QHF_FH_JSI9i_3	309.77	286.34			0.961	0.94738	16.984	29	8	Median	1.0961	0.94738	14.852	7	1	Median	0.77753	0.9299	16.569	8	4	Median	0.961	0.90299	16.317	7	1	Median	1.0428	1.1181	16.084	7	2	Median	26995000000	12433000000	14562000000	5866400000	2491000000	3375300000	5250100000	2787200000	2462900000	7451500000	3137400000	4314100000	8427100000	4016900000	4410200000	48481	2196	45646	292149;292150;292151;292152;292153;292154;292155;292156;292157;292158;292159;292160;292161;292162;292163;292164;292165;292166;292167;292168;292169;292170;292171;292172;292173;292174;292175;292176;292177;292178;292179	392070;392071;392072;392073;392074;392075;392076;392077;392078;392079;392080;392081;392082;392083;392084;392085;392086;392087;392088;392089;392090;392091;392092;392093;392094;392095;392096;392097;392098;392099;392100;392101;392102;392103;392104;392105;392106;392107;392108;392109;392110;392111;392112;392113;392114;392115;392116;392117;392118;392119;392120;392121;392122;392123;392124	392094			55	
SVFALTNGIYPHKLVF	1	Unmodified	1804.9876	0.98759141	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			97.605	97.236	3	0.021577	80604	160511_QHF_FH_JSI10i_3	36.638	32.169			0.67694	0.82067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67694	0.82067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5079400	2855500	2223900	0	0	0	5079400	2855500	2223900	0	0	0	0	0	0	48482	2196	45647	292180	392125	392125			1	
SVFDEELTNTSK	1	Unmodified	1368.6409	0.64088996	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.435	47.024	2	0.00056421	42588	160511_QHF_FH_JSI11i_1	83.775	60.722			3.5208	3.3805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5208	3.3805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36138000	10826000	25312000	0	0	0	0	0	0	36138000	10826000	25312000	0	0	0	48483	4096	45648	292181	392126	392126			1	
SVFDEELTNTSKK	2	Unmodified	1496.7359	0.73585297	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	38.843	38.663	3	0.00010992	32925	160511_QHF_FH_JSI12i_3	70.373	49.946			1.6063	1.6672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6063	1.6672	NaN	1	0	Median	135040000	51524000	83514000	0	0	0	0	0	0	0	0	0	135040000	51524000	83514000	48484	4096	45649	292182;292183	392127;392128;392129	392128			3	
SVFDIPIFTEEFLNHSK	1	Unmodified	2022.0098	0.0098429899	4882	Q9NP66	HMG20A	High mobility group protein 20A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.9	101.9	3	3.6154E-05	90995	160511_QHF_FH_JSI11i_3	87.088	69.94			1.1622	1.0979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1622	1.0979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84506000	48373000	36133000	0	0	0	0	0	0	84506000	48373000	36133000	0	0	0	48485	4882	45650	292184	392130	392130			1	
SVFEAFGK	1	Unmodified	883.44397	0.44396847	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.57	1	3						3		2	1	2	2	53.391	50.57	2	0.00035515	43613	160511_QHF_FH_JSI11i_2	111.01	77.269			1.0423	1.1114	14.241	5	0	Median	1.5851	1.3654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1932	1.1798	18.989	2	0	Median	0.97223	1.0654	5.9843	2	0	Median	1399400000	715900000	683500000	354120000	170480000	183640000	0	0	0	572820000	271570000	301250000	472460000	273840000	198620000	48486	5315	45651	292185;292186;292187;292188;292189;292190;292191	392131;392132;392133;392134;392135;392136;392137	392135			7	
SVFEAFGKIK	2	Acetyl (K)	1166.6336	0.63356015	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		78.409	69.095	2	1.0444E-06	37814	160513_QHF_FH_JSI11Kac_6	128.27	83.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48487	5315	45652	292192	392138	392138	3364		1	
SVFFGPDFITVTK	1	Unmodified	1456.7602	0.76021723	5425	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	95.857	95.71	2	2.296E-05	84137	160511_QHF_FH_JSI11i_2	83.397	63.093			0.74326	0.79478	22.021	4	1	Median	0.72559	0.64007	NaN	1	1	Median	0.73715	0.89417	NaN	1	0	Median	0.74943	0.70644	NaN	1	0	Median	1.039	1.0384	NaN	1	0	Median	87183000	47362000	39821000	16595000	11028000	5567100	5861000	2996700	2864300	22186000	12668000	9517400	42541000	20669000	21872000	48488	5425	45653	292193;292194;292195;292196;292197	392139;392140;392141;392142;392143	392141			5	
SVFGGLVNYFK	1	Unmodified	1229.6445	0.64445919	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	2	2	2	88.311	83.44	2	1.6225E-23	75927	160511_QHF_FH_JSI10i_3	179.68	156.94			1.0615	0.97589	7.1167	9	3	Median	1.1706	0.93656	9.2807	3	2	Median	0.82272	0.95583	2.9378	2	1	Median	1.072	1.0151	0.7524	2	0	Median	0.96887	1.0073	13.109	2	0	Median	1585500000	767140000	818370000	518510000	233360000	285150000	322710000	172200000	150510000	426700000	202840000	223860000	317590000	158740000	158850000	48489	720	45654	292198;292199;292200;292201;292202;292203;292204;292205;292206	392144;392145;392146;392147;392148;392149;392150;392151;392152;392153;392154;392155;392156;392157;392158;392159;392160;392161;392162	392147			19	
SVFGTPTLETANK	1	Unmodified	1363.6983	0.69834526	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.75		6	1				1	2		3	2	3	2	54.224	51.667	2	6.8066E-23	45262	160511_QHF_FH_JSI9i_2	150.04	126.9			1.0126	1.0172	17.117	6	3	Median	1.0281	0.90389	NaN	1	1	Median	0.81065	1.0047	NaN	1	0	Median	1.0325	1.0308	6.6206	2	0	Median	1.1126	1.2349	25.668	2	2	Median	576180000	287230000	288950000	103200000	54609000	48587000	90215000	52761000	37454000	175120000	94463000	80657000	207650000	85399000	122250000	48490	1685	45655	292207;292208;292209;292210;292211;292212;292213;292214;292215;292216	392163;392164;392165;392166;392167;392168;392169;392170;392171;392172;392173;392174	392170			12	
SVFHVVTSK	1	Unmodified	1002.5498	0.54983053	4561	Q9BZF9	UACA	Uveal autoantigen with coiled-coil domains and ankyrin repeats	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	26.133	26.101	2	0.0024991	21788	160511_QHF_FH_JSI12i_3	64.711	45.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48491	4561	45656	292217	392175	392175			1	
SVFIIFFQGDQLK	1	Unmodified	1540.829	0.8289655	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.892	85.519	2	2.1282E-63	47898	160513_QHF_FH_JSI9Kac_6	229.73	183.26			0.72924	0.91742	13.438	4	0	Linear	0.99907	0.84919	NaN	1	0	Median	0.73458	0.87148	NaN	1	0	Median	0.72394	0.70676	NaN	1	0	Median	0.633	0.66395	NaN	1	0	Median	459740000	280470000	179270000	98079000	52275000	45804000	218480000	132170000	86312000	92110000	59635000	32474000	51067000	36384000	14683000	48492	3926	45657	292218;292219;292220;292221	392176;392177;392178;392179;392180;392181;392182;392183	392179			8	
SVFILGASGETGR	0	Unmodified	1292.6725	0.67246486	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.41		5	5					8	4	6	6	7	3	63.213	57.568	2	1.2564E-40	31646	160513_QHF_FH_JSI10Kac_6	199.03	173.47			1.0622	1.0146	18.133	21	10	Median	1.2167	1.0468	25.752	6	3	Median	0.84546	0.99168	20.043	6	1	Median	1.0878	1.0405	12.161	7	6	Median	0.99552	1.0233	9.733	2	0	Median	2144700000	1081600000	1063100000	491250000	244090000	247160000	396490000	219610000	176890000	981900000	479070000	502830000	275040000	138820000	136220000	48493	4448	45658	292222;292223;292224;292225;292226;292227;292228;292229;292230;292231;292232;292233;292234;292235;292236;292237;292238;292239;292240;292241;292242;292243	392184;392185;392186;392187;392188;392189;392190;392191;392192;392193;392194;392195;392196;392197;392198;392199;392200;392201;392202;392203;392204;392205;392206;392207;392208;392209	392209			26	
SVFINNVLSK	1	Unmodified	1119.6288	0.62880913	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				63.668	62.167	2	0.00013287	51043	160511_QHF_FH_JSI9i_3	96.342	63.079			1.0983	0.89645	NaN	1	1	Median	1.0983	0.89645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134110000	78964000	55144000	134110000	78964000	55144000	0	0	0	0	0	0	0	0	0	48494	3819	45659	292244;292245	392210;392211	392211			2	
SVFLDQMK	1	Unmodified	966.48445	0.48445308	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.5	4.72		3	2					1		1		3	2	48.923	48.28	2	0.00024184	41404	160511_QHF_FH_JSI12i_2	117.04	98.305			1.2586	1.2621	21.149	5	1	Median	1.6563	1.3889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4522	1.4249	39.157	2	1	Median	1.1645	1.2278	3.8919	2	0	Median	1064400000	467520000	596840000	219870000	102530000	117340000	0	0	0	488890000	208990000	279890000	355610000	156000000	199610000	48495	5722	45660	292246;292247;292248;292249;292250;292251	392212;392213;392214;392215;392216;392217;392218;392219;392220;392221	392214			10	
SVFLDQMKK	2	Unmodified	1094.5794	0.57941609	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.885	38.384	3	0.0019774	31325	160511_QHF_FH_JSI9i_3	60.518	46.749			2.0593	1.9953	10.726	2	2	Median	2.6198	2.1525	NaN	1	1	Median	1.6186	1.8496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46041000	17133000	28909000	22383000	7400200	14983000	23658000	9732500	13926000	0	0	0	0	0	0	48496	5722	45661	292252;292253	392222;392223	392223			2	
SVFLEQMK	1	Unmodified	980.5001	0.50010314	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	48.318	47.661	2	0.00018357	40992	160511_QHF_FH_JSI11i_2	121.99	73.485			1.1662	1.2216	17.821	7	2	Median	1.1495	0.99017	NaN	1	0	Median	0.85307	1.0034	3.2078	2	1	Median	1.265	1.2408	2.2095	2	0	Median	1.3451	1.4443	13.776	2	1	Median	2567800000	1240500000	1327200000	360970000	212830000	148140000	497610000	250860000	246750000	947870000	443960000	503910000	761310000	332880000	428440000	48497	3218	45662	292254;292255;292256;292257;292258;292259;292260;292261	392224;392225;392226;392227;392228;392229;392230;392231;392232;392233;392234;392235;392236	392232			13	
SVFLEQMKK	2	Unmodified	1108.5951	0.59506616	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	38.622	37.136	2;3	0.0042657	30362	160511_QHF_FH_JSI9i_3	50.353	41.943			0.41746	0.48569	85.541	3	3	Median	0.42394	0.34431	117.67	2	2	Median	0.41746	0.48569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82499000	55087000	27411000	45120000	29151000	15969000	37379000	25936000	11443000	0	0	0	0	0	0	48498	3218	45663	292262;292263;292264;292265	392237;392238;392239;392240	392239			4	
SVFLGKIK	2	Acetyl (K)	932.5695	0.56950333	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		65.113	56.163	2	0.022962	30574	160513_QHF_FH_JSI11Kac_6	60.59	34.853			0.60206	0.62558	108.6	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1791	1.3483	NaN	1	0	Median	0.30742	0.29025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33719000	23633000	10086000	0	0	0	5162800	1880900	3281900	28556000	21752000	6803800	0	0	0	48499	1764	45664	292266;292267	392241	392241	1777		1	
SVFLHLMK	1	Unmodified	973.54191	0.54190838	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	57.592	53.028	3	0.00034892	44470	160511_QHF_FH_JSI10i_3	81.548	19.549			1.1675	0.94575	11.2	7	1	Median	1.1704	0.9651	4.7345	2	1	Median	0.7917	0.92727	NaN	1	0	Median	1.0889	1.0421	13.715	2	0	Median	0.94647	0.97566	20.789	2	0	Median	227280000	105170000	122100000	69134000	31626000	37508000	43563000	26069000	17494000	74254000	29955000	44299000	40326000	17522000	22804000	48500	303	45665	292268;292269;292270;292271;292272;292273;292274	392242;392243;392244;392245;392246;392247;392248;392249;392250;392251;392252	392245			10	
SVFMSSTTSASGTGR	0	Unmodified	1474.6722	0.67220686	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.7	6.24		2	2					4	3	5	4	2		36.248	29.717	2	2.1796E-08	24508	160511_QHF_FH_JSI9i_3	100.93	91.973			1.0234	0.96039	56.879	6	6	Median	1.933	1.6347	10.948	3	3	Median	0.45651	0.56807	16.32	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42840000	16705000	26134000	25754000	6545400	19208000	17086000	10160000	6926300	0	0	0	0	0	0	48501	615	45666	292275;292276;292277;292278;292279;292280;292281;292282;292283;292284;292285	392253;392254;392255;392256;392257;392258;392259;392260;392261;392262;392263	392257			11	
SVFPEQANNNEWAR	0	Unmodified	1660.7594	0.75938238	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.72	6	4	2					2		2	2	6	4	52.591	51.079	2	1.5743E-65	44125	160511_QHF_FH_JSI11i_2	230.41	194.9			1.0006	1.0001	20.335	12	5	Median	0.93078	0.77283	37.728	2	1	Median	0.81202	0.97533	30.051	2	0	Median	1.0134	1.0226	14.554	5	3	Median	0.88285	0.93948	7.5639	3	1	Median	1503000000	747680000	755340000	208930000	97159000	111770000	305630000	176670000	128960000	647520000	288440000	359080000	340940000	185410000	155520000	48502	313	45667	292286;292287;292288;292289;292290;292291;292292;292293;292294;292295;292296;292297;292298;292299	392264;392265;392266;392267;392268;392269;392270;392271;392272;392273;392274;392275;392276;392277;392278;392279;392280;392281;392282;392283	392277			20	
SVFSQSGNSR	0	Unmodified	1067.4996	0.49958587	1347	P30260	CDC27	Cell division cycle protein 27 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		4	2							2	3		1	11.282	10.647	2	0.003101	9246	160511_QHF_FH_JSI9i_2	56.916	46.206			0.81338	0.83031	17.139	6	3	Median	1.1814	0.98347	29.754	2	1	Median	0.89396	0.99095	11.949	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.74006	0.81097	NaN	1	0	Median	147470000	81231000	66243000	55147000	24466000	30681000	69893000	42902000	26990000	0	0	0	22434000	13862000	8572000	48503	1347	45668	292300;292301;292302;292303;292304;292305	392284;392285;392286;392287;392288;392289;392290	392288			7	
SVFVGNIPYEATEEQLK	1	Unmodified	1922.9626	0.96255845	1401;4636	P33240;Q9H0L4	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								3	3	5	3	78.081	77.508	2;3	2.273E-15	68056	160511_QHF_FH_JSI11i_2	187.57	164.65			1.0391	0.9864	22.819	14	5	Median	1.048	0.8847	26.404	3	0	Median	0.77716	0.88879	3.7176	3	0	Plateau	1.0817	1.0415	20.449	5	3	Median	0.95235	1.0811	11.715	3	2	Median	790460000	404880000	385580000	124370000	58975000	65391000	192430000	116910000	75522000	321360000	147820000	173540000	152310000	81178000	71129000	48504	1401;4636	45669	292306;292307;292308;292309;292310;292311;292312;292313;292314;292315;292316;292317;292318;292319	392291;392292;392293;392294;392295;392296;392297;392298;392299;392300;392301;392302;392303;392304;392305;392306;392307;392308;392309;392310;392311;392312	392309			22	
SVFYLLMK	1	Unmodified	999.54633	0.54632505	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	3	2	84.254	80.301	2	0.0013089	41380	160513_QHF_FH_JSI11Kac_6	100.45	77.711			1.1031	1.1201	21.391	9	4	Median	1.154	0.97948	37.596	2	1	Median	1.0452	1.2446	14.914	2	1	Median	1.198	1.0986	22.057	3	2	Median	0.99552	1.0516	16.24	2	0	Median	301930000	146250000	155690000	85533000	45787000	39746000	85239000	39498000	45740000	87124000	39591000	47532000	44039000	21371000	22668000	48505	405	45670	292320;292321;292322;292323;292324;292325;292326;292327;292328	392313;392314;392315;392316;392317;392318;392319;392320;392321;392322;392323	392316			11	
SVGATNMNEHSSR	0	Unmodified	1388.6103	0.61027531	5617	Q9Y496	KIF3A	Kinesin-like protein KIF3A	no	no	0	0	0	0	By MS/MS				2	0		1								1				8.1944	7.7183	3	0.00049691	5589	160511_QHF_FH_JSI9i_2	54.898	40.934			1.9453	1.7111	NaN	1	1	Median	1.9453	1.7111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13060000	3432000	9627900	13060000	3432000	9627900	0	0	0	0	0	0	0	0	0	48506	5617	45671	292329	392324	392324			1	
SVGDGETVEFDVVEGEK	1	Unmodified	1794.816	0.81595379	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.843	9	1	3							3	3	3	4	63.665	63.048	2;3	0	57187	160511_QHF_FH_JSI11i_1	391.27	349.27			1.0139	1.0398	7.254	10	0	Median	1.1975	0.97783	8.6419	2	0	Median	0.86622	1.0468	7.9608	3	0	Plateau	1.1328	1.0863	5.1557	3	0	Median	0.94221	0.99737	5.9276	2	0	Median	4526000000	2227600000	2298400000	663720000	299140000	364580000	1538700000	829810000	708920000	1155100000	516410000	638680000	1168400000	582240000	586180000	48507	2066;1106	45672	292330;292331;292332;292333;292334;292335;292336;292337;292338;292339;292340;292341;292342	392325;392326;392327;392328;392329;392330;392331;392332;392333;392334;392335;392336;392337;392338;392339;392340;392341;392342;392343;392344;392345;392346;392347;392348;392349;392350;392351;392352;392353	392327			29	
SVGDGLSTSAVGCASAAPR	0	Unmodified	1761.8316	0.83156105	2210	Q03468;P0DP91	ERCC6	DNA excision repair protein ERCC-6	yes	no	0	0	0	0				By MS/MS	1	0	1												1	44.306	43.661	2	0.000326	39694	160511_QHF_FH_JSI12i_1	65.043	54.855			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48508	2210	45673	292343	392354	392354			1	
SVGDNSSDLSNVAVIDGNR	0	Unmodified	1917.9028	0.90281174	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	55.638	55.064	2	7.4813E-138	48807	160511_QHF_FH_JSI9i_1	282.55	231.26			0.8938	0.85474	4.607	6	4	Linear	1.0233	0.85718	NaN	1	0	Median	0.79451	0.92598	5.1961	2	2	Median	0.95251	0.92793	4.8396	2	2	Median	0.87116	0.88711	NaN	1	0	Median	501490000	269440000	232050000	78808000	40980000	37829000	174850000	100390000	74465000	164790000	82712000	82083000	83037000	45361000	37676000	48509	648	45674	292344;292345;292346;292347;292348;292349	392355;392356;392357;392358;392359;392360;392361;392362	392361			8	
SVGDVALSQIVR	0	Unmodified	1242.6932	0.6932003	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		74.306	63.576	2	0.014453	33947	160513_QHF_FH_JSI11Kac_5	59.426	43.797			1.1561	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1561	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3396400	1601800	1794600	0	0	0	0	0	0	3396400	1601800	1794600	0	0	0	48510	3516	45675	292350	392363	392363			1	
SVGELPSTVESLQK	1	Unmodified	1472.7722	0.77223848	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	3.56	9	2					1			3	2	3	4	59.133	58.465	2;3	1.4181E-09	53048	160511_QHF_FH_JSI11i_1	142.19	117.34			1.1266	1.1688	28.064	10	2	Median	2.2934	1.8691	46.844	3	0	Plateau	1.0078	1.1982	6.3016	2	0	Median	1.1176	1.0925	29.682	3	1	Median	1.1502	1.1985	0.75539	2	1	Median	1313600000	614250000	699350000	331570000	130960000	200620000	242820000	124200000	118620000	464660000	231840000	232820000	274560000	127260000	147300000	48511	2252	45676	292351;292352;292353;292354;292355;292356;292357;292358;292359;292360;292361;292362	392364;392365;392366;392367;392368;392369;392370;392371;392372;392373;392374;392375;392376	392365			12	
SVGEVMAIGR	0	Unmodified	1017.5277	0.52771487	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.04		4	4				3	4		3	4	4	4	48.811	43.37	2	2.559E-11	38423	160511_QHF_FH_JSI11i_3	151.44	108.32			0.93108	1.0501	14.505	15	0	Median	1.2697	1.0645	4.9281	3	0	Plateau	0.81238	0.94504	8.5595	4	0	Median	1.1826	1.1313	19.056	4	0	Median	0.91482	1.0102	15.35	4	0	Median	5136100000	2455500000	2680600000	640800000	289210000	351590000	947530000	500130000	447410000	1902100000	910690000	991430000	1645700000	755510000	890150000	48512	1372	45677	292363;292364;292365;292366;292367;292368;292369;292370;292371;292372;292373;292374;292375;292376;292377	392377;392378;392379;392380;392381;392382;392383;392384;392385;392386;392387;392388;392389;392390;392391;392392;392393;392394;392395;392396;392397;392398;392399;392400;392401;392402	392377			26	
SVGEVMAIGR	0	Oxidation (M)	1033.5226	0.5226295	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	12	5.2			1					3			1	1	2	34.114	26.835	2	0.030269	14542	160513_QHF_FH_JSI12Kac_5	41.448	14.846			1.5	1.1289	20.806	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.0002	1.1705	NaN	1	0	Median	1.0307	0.98389	NaN	1	0	Median	1.2466	1.3175	26.962	2	1	Median	62377000	26705000	35672000	0	0	0	3437300	1835200	1602200	6534900	3520300	3014600	52405000	21350000	31055000	48513	1372	45677	292378;292379;292380;292381	392403;392404;392405	392404			3	
SVGEVMGIGR	0	Unmodified	1003.5121	0.51206481	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	42.812	42.102	2	0.00050782	37079	160511_QHF_FH_JSI11i_3	85.67	57.158			0.75212	0.70773	32.831	6	2	Median	0.91122	0.77593	NaN	1	1	Median	0.43906	0.51395	32.237	2	0	Median	0.82197	0.7941	34.408	2	0	Median	0.95854	0.93437	NaN	1	1	Median	590520000	326430000	264090000	95879000	48809000	47071000	87966000	61874000	26092000	278790000	147410000	131380000	127890000	68338000	59548000	48514	1296	45678	292382;292383;292384;292385;292386;292387	392406;392407;392408;392409;392410;392411;392412	392406			7	
SVGFIGAGQLAFALAK	1	Acetyl (Protein N-term)	1590.877	0.87697832	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	3	2	2	102.7	102.6	2	1.0399E-22	93225	160511_QHF_FH_JSI12i_1	118.4	82.862			0.95389	1.1639	62.743	9	1	Median	3.2622	2.7438	120.12	2	1	Median	0.95389	1.1361	28.33	3	0	Plateau	1.2068	1.2191	3.1066	2	0	Median	0.89444	0.96989	6.6231	2	0	Median	940550000	458420000	482130000	136850000	44153000	92695000	285090000	156630000	128450000	266010000	131020000	134990000	252600000	126610000	125990000	48515	1394	45679	292388;292389;292390;292391;292392;292393;292394;292395;292396	392413;392414;392415;392416;392417;392418;392419;392420;392421;392422;392423;392424	392418			12	
SVGFIGAGQLAYALAR	0	Acetyl (Protein N-term)	1634.878	0.87804096	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	102.21	102.09	2	4.5748E-14	90260	160511_QHF_FH_JSI9i_1	246.14	222.91			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48516	4000	45680	292397;292398;292399;292400;292401	392425;392426;392427;392428;392429	392429			5	
SVGGACVLVA	0	Unmodified	931.4797	0.47970205	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	52.583	51.914	1	0.012047	46835	160511_QHF_FH_JSI11i_1	54.157	42.746			1.1423	1.2527	21.409	4	0	Median	1.5468	1.3307	NaN	1	0	Median	1.1227	1.2936	NaN	1	0	Median	0.867	0.83891	NaN	1	0	Median	1.1623	1.2131	NaN	1	0	Median	265410000	129470000	135940000	37253000	14958000	22296000	85768000	41991000	43777000	79173000	45851000	33322000	63212000	26670000	36542000	48517	1589	45681	292402;292403;292404;292405	392430	392430			0	
SVGGSFYLQSK	1	Unmodified	1171.5873	0.58733824	5589	Q9Y3D7	PAM16	Mitochondrial import inner membrane translocase subunit TIM16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.51		1	3					1	3	2	2	3	1	47.28	42.238	2	1.8454E-29	37179	160511_QHF_FH_JSI11i_3	185.29	164.77			1.3518	1.1955	11.573	8	2	Median	1.4881	1.2242	1.5308	2	0	Median	0.90972	1.0866	2.0929	2	1	Median	1.4645	1.4159	11.862	3	1	Median	1.1075	1.1219	NaN	1	0	Median	1233600000	521290000	712350000	18386000	7811900	10574000	99697000	45650000	54047000	494940000	198510000	296420000	620620000	269310000	351300000	48518	5589	45682	292406;292407;292408;292409;292410;292411;292412;292413	392431;392432;392433;392434;392435;392436;392437;392438;392439	392432			9	
SVGGSGGGSFGDNLVTR	0	Unmodified	1565.7434	0.74339797	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	48.629	44.184	2	3.9588E-159	40446	160511_QHF_FH_JSI12i_1	296.22	276.91			1.0222	1.0629	8.069	19	1	Median	1.3521	1.1306	8.6447	4	0	Median	0.8686	1.0181	4.5343	5	0	Median	1.1726	1.0821	10.588	5	1	Median	0.97119	1.0559	7.1301	5	0	Median	4759400000	2419100000	2340300000	760730000	328810000	431920000	1141900000	631940000	509980000	1647700000	819170000	828580000	1209000000	639150000	569860000	48519	791	45683	292414;292415;292416;292417;292418;292419;292420;292421;292422;292423;292424;292425;292426;292427;292428;292429;292430;292431;292432	392440;392441;392442;392443;392444;392445;392446;392447;392448;392449;392450;392451;392452;392453;392454;392455;392456;392457;392458;392459;392460;392461;392462;392463;392464;392465;392466;392467;392468	392446			29	
SVGHTEDAWQSNFLHPVIYYYR	0	Unmodified	2681.2663	0.26628546	3421	Q8IWF2	FOXRED2	FAD-dependent oxidoreductase domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	81.959	72.581	4	0.019715	38480	160513_QHF_FH_JSI12Kac_6	32.706	25.084			1.0531	1.0671	5.9932	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.079	1.0229	NaN	1	0	Median	1.0279	1.1133	NaN	1	0	Median	40117000	21031000	19086000	0	0	0	0	0	0	17616000	10959000	6657600	22501000	10072000	12429000	48520	3421	45684	292433;292434	392469;392470	392470			0	
SVGKGLQVK	2	Acetyl (K)	956.56548	0.56548059	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	37.926	28.284	2	0.057458	16928	160513_QHF_FH_JSI12Kac_4	42.109	6.2289			0.82	0.88076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82	0.88076	NaN	1	0	Median	5553700	3453700	2100000	0	0	0	0	0	0	0	0	0	5553700	3453700	2100000	48521	2409	45685	292435	392471	392471			1	
SVGKPALER	1	Unmodified	955.54508	0.5450795	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			13.744	12.938	2;3	0.013647	10119	160511_QHF_FH_JSI9i_3	66.621	40.885			0.53274	0.62399	26.023	3	0	Median	1.138	0.92276	NaN	1	0	Median	0.51719	0.59308	7.1857	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174700000	111200000	63496000	44581000	23165000	21416000	130110000	88034000	42080000	0	0	0	0	0	0	48522	5119	45686	292436;292437;292438	392472;392473	392473			2	
SVGKVEPSSQSPGR	1	Acetyl (K)	1455.7318	0.73177065	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				2	1	1	30.284	21.924	2	0.0016055	13067	160513_QHF_FH_JSI12Kac_3	76.655	56.868			0.87182	0.83489	15.629	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93061	1.0906	NaN	1	0	Median	0.87182	0.83489	NaN	1	0	Median	0.74986	0.82918	NaN	1	0	Median	13448000	7312500	6135600	0	0	0	4734100	2243300	2490800	3289000	2195100	1094000	5425000	2874100	2550800	48523	3395	45687	292439;292440;292441;292442	392474;392475;392476;392477	392476	2857		4	
SVGLEVYTQSFSR	0	Unmodified	1471.7307	0.73070802	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		2							2			1	3	68.4	64.603	2	8.606E-31	33565	160513_QHF_FH_JSI12Kac_6	168.3	126.3			0.71592	0.73634	36.3	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56861	0.55875	NaN	1	0	Median	0.98901	1.0368	9.3613	2	1	Median	112970000	63781000	49186000	0	0	0	0	0	0	49980000	29688000	20292000	62988000	34094000	28894000	48524	319	45688	292443;292444;292445;292446	392478;392479;392480;392481	392481			4	
SVGMIAGGTGITPMLQVIR	0	Unmodified	1900.0274	0.027424084	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.68	4.27	2	9	6						2	4	5	6	4	99.289	98.826	2;3	1.9791E-56	46767	160513_QHF_FH_JSI10Kac_6	244	207.58			0.82429	0.97713	23.846	17	2	Median	1.3527	1.1559	8.8848	4	0	Median	0.80122	0.97713	11.792	5	0	Median	0.82225	0.83555	37.26	4	0	Median	0.77963	0.81953	21.588	4	2	Median	1162000000	614120000	547910000	313200000	135780000	177420000	368160000	206700000	161460000	218440000	120860000	97583000	262220000	150770000	111450000	48525	764	45689	292447;292448;292449;292450;292451;292452;292453;292454;292455;292456;292457;292458;292459;292460;292461;292462;292463;292464;292465	392482;392483;392484;392485;392486;392487;392488;392489;392490;392491;392492;392493;392494;392495;392496;392497;392498;392499;392500;392501;392502;392503;392504;392505;392506;392507;392508;392509;392510	392510			29	
SVGMIAGGTGITPMLQVIR	0	Oxidation (M)	1916.0223	0.022338707	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	2.71	0.452		2	5							3	3		1	86.199	85.329	2	1.6246E-13	73320	160511_QHF_FH_JSI12i_3	151.74	138.31			0.89888	1.0251	41.747	7	4	Median	1.7033	1.4225	64.156	3	2	Median	0.83543	0.98482	15.796	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.7198	0.73578	NaN	1	0	Median	85705000	41577000	44128000	29740000	12100000	17640000	40075000	20995000	19080000	0	0	0	15891000	8481900	7408700	48526	764	45689	292466;292467;292468;292469;292470;292471;292472	392511;392512;392513;392514;392515;392516;392517;392518;392519;392520;392521;392522	392522		271;272	12	
SVGPDFGK	1	Unmodified	805.39702	0.39701828	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.62	4	5	1				2			3	3	4	2	26.717	24.539	2	0.00098846	21515	160511_QHF_FH_JSI10i_1	95.531	70.899			1.0231	1.0832	26.911	12	3	Median	1.1467	0.96674	19.263	3	1	Plateau	0.95024	1.1228	23.989	3	0	Median	1.1718	1.1349	42.532	4	2	Median	0.97479	1.0674	5.51	2	0	Median	2201300000	1114000000	1087300000	432630000	194130000	238500000	460050000	274010000	186040000	804140000	378400000	425740000	504470000	267490000	236980000	48527	2094	45690	292473;292474;292475;292476;292477;292478;292479;292480;292481;292482;292483;292484	392523;392524;392525;392526;392527;392528;392529;392530;392531;392532;392533;392534;392535;392536;392537;392538;392539;392540;392541;392542	392531			20	
SVGPDFGKK	2	Unmodified	933.49198	0.4919813	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	17.396	16.849	2;3	5.9381E-06	13333	160511_QHF_FH_JSI12i_3	114.28	85.132			1.0191	1.0418	16.02	8	1	Median	1.3578	1.1017	14.778	2	1	Median	0.89796	1.0417	8.9436	2	0	Median	0.86167	0.81031	10.402	2	0	Median	1.1071	1.1252	4.011	2	0	Median	1976100000	941150000	1035000000	197560000	94137000	103420000	247110000	115860000	131250000	459480000	190280000	269190000	1072000000	540870000	531110000	48528	2094	45691	292485;292486;292487;292488;292489;292490;292491;292492	392543;392544;392545;392546;392547;392548;392549;392550;392551;392552;392553;392554;392555	392553			13	
SVGPDFGKK	2	Acetyl (K)	975.50255	0.50254598	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	41.678	31.71	2	0.023059	18760	160513_QHF_FH_JSI12Kac_4	76.827	65.458			0.78814	0.92537	36.181	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78814	0.92537	NaN	1	0	Median	0.50482	0.50229	NaN	1	0	Median	0.88303	0.95373	NaN	1	0	Median	20860000	12935000	7924800	0	0	0	6054100	3801600	2252500	8555200	5616500	2938700	6250900	3517400	2733500	48529	2094	45691	292493;292494;292495	392556;392557	392557	2206		2	
SVGPPLLQLFLDLLR	0	Unmodified	1679.9974	0.99742781	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.53	98.808	2	1.3508E-11	58517	160513_QHF_FH_JSI10Kac_6	132.31	95.863			0.80762	0.97673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80762	0.97673	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64361000	31566000	32795000	0	0	0	64361000	31566000	32795000	0	0	0	0	0	0	48530	405	45692	292496	392558;392559	392558			2	
SVGQGYSVGQSMR	0	Unmodified	1354.6299	0.62994811	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	30.189	28.846	2	0.00030191	24018	160511_QHF_FH_JSI10i_3	73.781	64.918			1.0301	1.1519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0301	1.1519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21230000	9463200	11767000	0	0	0	21230000	9463200	11767000	0	0	0	0	0	0	48531	4679	45693	292497;292498	392560;392561;392562	392561			3	
SVGQYDNR	0	Unmodified	937.42536	0.42535829	1043	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.8	5.88		3					2			2	1	2		9.9996	7.1209	2	0.0057475	6528	160511_QHF_FH_JSI9i_2	61.582	44.021			1.2172	1.4751	22.956	3	3	Median	1.1816	1.013	NaN	1	1	Median	1.2172	1.5362	NaN	1	1	Median	1.4679	1.4751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	82697000	36218000	46479000	37939000	15916000	22023000	41155000	18918000	22237000	3603000	1384100	2218900	0	0	0	48532	1043	45694	292499;292500;292501;292502;292503	392563;392564;392565;392566;392567	392566			5	
SVGYKPDFVGFEIPDK	2	Unmodified	1796.8985	0.89850163	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.583	1	9	6							3	4	5	4	77.016	76.357	2;3	9.782E-06	68306	160511_QHF_FH_JSI11i_3	112.01	91.963			0.9152	1.0595	17.392	15	11	Plateau	1.1468	0.99641	11.771	3	3	Plateau	0.84017	1.1104	5.4049	4	2	Linear	0.80437	0.84021	28.149	5	4	Plateau	0.95647	0.96569	5.5699	3	2	Median	5373300000	3202600000	2170700000	352430000	179630000	172800000	654360000	370120000	284240000	2442400000	1600000000	842400000	1924100000	1052900000	871220000	48533	772	45695	292504;292505;292506;292507;292508;292509;292510;292511;292512;292513;292514;292515;292516;292517;292518;292519	392568;392569;392570;392571;392572;392573;392574;392575;392576;392577;392578;392579;392580;392581;392582;392583;392584;392585;392586;392587;392588;392589;392590	392569			23	
SVGYPHPDWIWR	0	Unmodified	1511.731	0.73098279	5702	Q9Y639	NPTN	Neuroplastin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		2	2	3	72.742	70.897	2;3	9.1213E-06	61185	160511_QHF_FH_JSI12i_3	103.46	98.66			1.1756	1.1281	23.92	7	3	Median	NaN	NaN	NaN	0	0	Median	1.1246	1.2854	18.465	2	1	Median	1.0198	0.96548	17.024	2	1	Median	1.2789	1.3046	27.92	3	1	Median	254820000	122080000	132740000	0	0	0	26037000	10215000	15822000	81781000	36580000	45201000	147000000	75288000	71713000	48534	5702	45696	292520;292521;292522;292523;292524;292525;292526	392591;392592;392593;392594;392595;392596;392597;392598;392599	392597			9	
SVHAAPNPAPK	1	Unmodified	1087.5774	0.57744226	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.0796	9.1771	2	0.0061006	6574	160511_QHF_FH_JSI12i_3	54.191	39.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48535	2862	45697	292527	392600	392600			1	
SVHELEK	1	Unmodified	840.43413	0.43413207	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.36		9	6					2	2	5	5	5	4	8.7979	6.4794	2;3	0.0020907	5662	160511_QHF_FH_JSI12i_2	83.206	51.917			2.3328	2.0609	87.965	18	15	Median	2.2938	1.9604	69.479	5	3	Median	0.85564	1.0349	38.056	4	3	Median	2.8479	2.9628	128.2	5	5	Median	2.6075	2.9062	104.83	4	4	Median	5505900000	1856600000	3649300000	1089000000	318190000	770850000	1227600000	553010000	674610000	1658400000	438420000	1219900000	1530900000	547010000	983920000	48536	1436	45698	292528;292529;292530;292531;292532;292533;292534;292535;292536;292537;292538;292539;292540;292541;292542;292543;292544;292545;292546	392601;392602;392603;392604;392605;392606;392607;392608;392609;392610;392611;392612;392613;392614;392615;392616;392617;392618;392619;392620;392621	392603			21	
SVHELEKSK	2	Acetyl (K)	1097.5717	0.57168818	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.533							1	9	3	3	3	3	4	20.552	11.534	2;3	0.00010617	8282	160513_QHF_FH_JSI9Kac_5	97.456	69.975			0.96209	0.80059	54.498	6	1	Median	0.96209	0.80059	11.025	2	0	Median	1.2492	1.4819	13.603	2	1	Median	0.36334	0.35855	NaN	1	0	Median	0.57661	0.63079	NaN	1	0	Median	131170000	86508000	44657000	15440000	6730400	8709600	27811000	19516000	8294600	64425000	43993000	20432000	23490000	16269000	7220700	48537	1436	45699	292547;292548;292549;292550;292551;292552;292553;292554;292555;292556;292557;292558;292559	392622;392623;392624;392625;392626;392627;392628;392629;392630;392631;392632	392623	1413		11	
SVHFPGQAVGTR	0	Unmodified	1254.6469	0.64691881	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			31.084	29.701	2	0.00020646	24226	160511_QHF_FH_JSI9i_3	80.102	69.272			0.94653	0.92279	9.8235	2	0	Median	1.0573	0.86087	NaN	1	0	Median	0.84734	0.98917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90990000	44859000	46131000	66138000	31362000	34776000	24852000	13497000	11355000	0	0	0	0	0	0	48538	2242	45700	292560;292561	392633;392634;392635	392635			3	
SVHKVEPITK	2	Acetyl (K)	1178.6659	0.66592292	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		31.264	22.025	2	0.015889	12585	160513_QHF_FH_JSI11Kac_6	63.283	55.063			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2989800	2989800	0	0	0	0	0	0	0	2989800	2989800	0	0	0	0	48539	1265	45701	292562	392636	392636	1164;1165		1	
SVHSLISDFK	1	Unmodified	1131.5924	0.59242362	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			51.523	49.958	2	0.0045244	41709	160511_QHF_FH_JSI10i_3	65.535	55.549			0.40464	0.47735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40464	0.47735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56421000	44641000	11780000	0	0	0	56421000	44641000	11780000	0	0	0	0	0	0	48540	1962	45702	292563	392637	392637			1	
SVHSLISDFKDPPTAK	2	Unmodified	1740.9046	0.90464964	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	55.845	54.771	3;4	5.918E-05	45392	160511_QHF_FH_JSI9i_3	63.682	57.245			0.81662	0.83506	41.671	6	1	Median	1.0406	0.83605	45.055	2	0	Median	1.14	1.2996	55.553	2	1	Median	0.85289	0.79474	NaN	1	0	Median	0.67961	0.69445	NaN	1	0	Median	312040000	146970000	165070000	78191000	37844000	40346000	68316000	29443000	38873000	97027000	44035000	52993000	68504000	35647000	32857000	48541	1962	45703	292564;292565;292566;292567;292568;292569	392638;392639;392640;392641;392642	392641			5	
SVHSSVPLLNSK	1	Unmodified	1266.6932	0.6932003	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		34.562	34.562	2	0.0054217	30134	160511_QHF_FH_JSI11i_3	54.343	33.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48542	2348	45704	292570	392643	392643			1	
SVHYCPATK	1	Unmodified	1061.4964	0.49641475	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	9.6237	9.5434	2;3	2.6129E-05	7114	160511_QHF_FH_JSI11i_3	96.668	91.358			0.94695	0.92127	44.857	4	0	Median	0.59929	0.52205	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75228	0.68959	NaN	1	0	Median	1.2511	1.2705	4.4948	2	0	Median	590290000	264530000	325760000	24291000	15553000	8738200	0	0	0	93272000	48811000	44462000	472730000	200170000	272560000	48543	1254	45705	292571;292572;292573;292574	392644;392645;392646;392647;392648	392644			5	
SVHYCPATKK	2	Unmodified	1189.5914	0.59137776	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		7.4551	7.0972	3	0.0047461	5061	160511_QHF_FH_JSI10i_3	36.847	28.542			0.87296	1.0097	47.179	3	0	Median	2.1088	1.7106	NaN	1	0	Median	0.87296	1.0097	NaN	1	0	Median	0.71269	0.66733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	147240000	78292000	68948000	43378000	14043000	29335000	58504000	35125000	23379000	45359000	29124000	16235000	0	0	0	48544	1254	45706	292575;292576;292577	392649;392650	392649			2	
SVIDPVPAPVGDSHVDGAAK	1	Unmodified	1929.9796	0.97960549	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	55.105	53.193	3	4.9753E-09	47065	160511_QHF_FH_JSI9i_1	109.65	99.057			1.0102	0.92828	14.417	9	0	Median	1.0464	0.88151	7.3112	2	0	Median	0.71933	0.86687	3.0955	2	0	Median	1.1538	1.1308	11.127	2	0	Median	0.96393	0.97441	15.496	3	0	Median	1014700000	482150000	532520000	257240000	123390000	133850000	247750000	127500000	120250000	276760000	124730000	152040000	232920000	106530000	126390000	48545	2366	45707	292578;292579;292580;292581;292582;292583;292584;292585;292586	392651;392652;392653;392654;392655;392656;392657;392658;392659;392660;392661;392662	392658			10	
SVIDYQTHFR	0	Unmodified	1264.62	0.62003536	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.26		10	10						9	8	7	7	7	41.664	38.433	2;3	1.8766E-26	33053	160511_QHF_FH_JSI11i_2	167.09	159.05			1.0027	0.97206	12.57	25	8	Median	1.2218	0.97206	18.962	7	3	Median	0.89164	1.0108	5.8596	5	2	Median	1.0056	0.95569	3.3712	7	3	Median	0.89049	0.90221	15.635	6	0	Median	5086400000	2539900000	2546500000	613130000	287560000	325560000	775830000	413830000	362000000	1888100000	925840000	962220000	1809400000	912650000	896730000	48546	5573	45708	292587;292588;292589;292590;292591;292592;292593;292594;292595;292596;292597;292598;292599;292600;292601;292602;292603;292604;292605;292606;292607;292608;292609;292610;292611;292612;292613;292614;292615	392663;392664;392665;392666;392667;392668;392669;392670;392671;392672;392673;392674;392675;392676;392677;392678;392679;392680;392681;392682;392683;392684;392685;392686;392687;392688;392689;392690;392691;392692;392693;392694;392695;392696;392697;392698;392699;392700;392701;392702	392685			40	
SVIEALK	1	Unmodified	758.4538	0.45380487	4036	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	4.6	5.2		4						1			1	2	2	36.347	33.486	2	0.011246	28367	160511_QHF_FH_JSI11i_2	71.342	17.788			0.92035	0.89967	77.973	5	1	Median	NaN	NaN	NaN	0	0	Median	0.66299	0.81401	NaN	1	0	Median	0.95	0.9404	6.2614	2	0	Median	0.3853	0.42723	132.49	2	1	Median	352240000	201380000	150860000	0	0	0	94028000	52359000	41669000	134860000	69173000	65683000	123360000	79849000	43510000	48547	4036	45709	292616;292617;292618;292619;292620	392703;392704;392705;392706	392705			4	
SVIEDVINDVR	0	Unmodified	1257.6565	0.65648044	1777	P52655	GTF2A1	Transcription initiation factor IIA subunit 1;Transcription initiation factor IIA alpha chain;Transcription initiation factor IIA beta chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	80.855	80.352	2	0.00062724	70916	160511_QHF_FH_JSI9i_2	85.377	63.291			1.0178	1.0745	29.214	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94116	0.88248	46.026	2	2	Median	1.0178	1.0745	7.3757	2	1	Median	74950000	38968000	35982000	0	0	0	0	0	0	36624000	21021000	15603000	38327000	17947000	20380000	48548	1777	45710	292621;292622;292623;292624;292625	392707;392708;392709;392710;392711	392709			5	
SVIENAK	1	Unmodified	759.41267	0.41266834	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	3	1	10.153	8.5506	2	0.012569	6925	160511_QHF_FH_JSI12i_2	69.176	22.75			0.99439	1.1246	24.471	6	1	Linear	1.0615	0.89646	NaN	1	0	Median	0.93151	1.1331	NaN	1	0	Median	1.1867	1.1814	36.631	3	1	Plateau	0.883	0.99836	NaN	1	0	Median	1616100000	779370000	836760000	239800000	115170000	124620000	248670000	142900000	105780000	799680000	368350000	431340000	327980000	152960000	175030000	48549	2780	45711	292626;292627;292628;292629;292630;292631	392712;392713;392714;392715;392716;392717	392713			6	
SVIEQGGIQTVDQLIK	1	Unmodified	1726.9465	0.94651445	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	81.906	81.291	2;3	3.5471E-65	74121	160511_QHF_FH_JSI11i_1	226.04	201.19			1.128	1.0001	15.441	16	0	Median	1.1625	0.98584	8.5897	4	0	Median	0.82251	0.97907	5.9269	4	0	Median	1.2181	1.1974	4.2748	4	0	Median	1.0231	1.1078	25.005	4	0	Median	833760000	401960000	431800000	150890000	66898000	83995000	229700000	124040000	105660000	273350000	117940000	155410000	179820000	93085000	86737000	48550	3766	45712	292632;292633;292634;292635;292636;292637;292638;292639;292640;292641;292642;292643;292644;292645;292646;292647	392718;392719;392720;392721;392722;392723;392724;392725;392726;392727;392728;392729;392730;392731;392732;392733;392734;392735;392736;392737;392738;392739;392740;392741;392742;392743	392721			26	
SVIFHNHLDYLAK	1	Unmodified	1555.8147	0.81471242	560	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			4							2	1		1	54.01	52.776	3;4	0.00042405	43699	160511_QHF_FH_JSI9i_3	60.345	49.24			1.1211	1.0391	21.222	4	0	Median	1.4317	1.1713	2.8139	2	0	Median	0.6629	0.75263	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8896	0.94032	NaN	1	0	Median	143570000	70651000	72922000	73401000	35844000	37557000	11894000	6345600	5548000	0	0	0	58278000	28462000	29817000	48551	560	45713	292648;292649;292650;292651	392744;392745;392746	392744			2	
SVIGHLQTK	1	Unmodified	981.56073	0.56072956	386	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	17.705	17.209	2;3	5.4408E-06	13970	160511_QHF_FH_JSI9i_3	115.71	98.329			1.1302	1.1503	57.471	9	3	Median	0.58007	0.46832	25.244	2	1	Median	0.88248	1.0086	2.0663	2	0	Median	1.2844	1.2256	0.31454	2	0	Median	1.6068	1.6427	46.258	3	2	Median	2531300000	1194100000	1337200000	518040000	341860000	176180000	496820000	258320000	238500000	620280000	303420000	316860000	896180000	290490000	605700000	48552	386	45714	292652;292653;292654;292655;292656;292657;292658;292659;292660	392747;392748;392749;392750;392751;392752;392753;392754;392755;392756;392757;392758;392759;392760	392755			14	
SVIGLMDIK	1	Oxidation (M)	990.54197	0.54196796	4482	Q9BVQ7	SPATA5L1	Spermatogenesis-associated protein 5-like protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	103.04	102.96	2	0.023768	90845	160511_QHF_FH_JSI9i_2	43.808	33.394			1.3606	1.2873	12.959	6	0	Median	1.452	1.2172	7.8458	2	0	Median	1.235	1.4643	18.158	2	0	Median	1.2735	1.1932	NaN	1	0	Median	1.3125	1.3409	NaN	1	0	Median	325480000	140350000	185130000	75777000	29221000	46556000	93019000	42019000	51000000	70918000	33625000	37294000	85770000	35487000	50283000	48553	4482	45715	292661;292662;292663;292664;292665;292666	392761	392761			1	
SVIGTPEFMAPEMYEEK	1	Unmodified	1956.8849	0.88490175	4714	Q9H4A3;Q96J92	WNK1;WNK4	Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								1	2	3	3	83.7	83.233	2;3	4.5409E-11	71824	160511_QHF_FH_JSI12i_2	109.6	101.69			1.4831	1.4587	24.723	8	8	Median	1.1763	0.95515	NaN	1	1	Median	1.2773	1.5162	28.671	2	2	Median	1.597	1.5577	12.046	3	3	Plateau	1.7481	1.7841	21.485	2	2	Median	240260000	105370000	134880000	20966000	11684000	9281400	88646000	44006000	44639000	76379000	30577000	45802000	54267000	19104000	35162000	48554	4714	45716	292667;292668;292669;292670;292671;292672;292673;292674;292675	392762;392763;392764;392765;392766;392767;392768;392769;392770;392771;392772;392773	392764			12	
SVIHSHIK	1	Unmodified	919.52395	0.52395013	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								1		2	7.6329	7.4064	2;3	0.0011195	4579	160511_QHF_FH_JSI12i_3	86.833	27.628			0.88763	0.96506	62.655	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53053	0.61965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4851	1.503	NaN	1	1	Median	165410000	85860000	79552000	0	0	0	25136000	15822000	9314200	0	0	0	140280000	70038000	70238000	48555	2752	45717	292676;292677;292678	392774;392775;392776	392776			3	
SVIIMNHR	0	Unmodified	968.52257	0.52256992	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									3	1	2			27.094	18.992	2;3	0.00065475	11225	160513_QHF_FH_JSI10Kac_6	85.064	74.191			0.79557	0.91022	22.83	3	0	Plateau	1.5661	1.3912	NaN	1	0	Median	0.80855	0.94072	4.6617	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20860000	10354000	10506000	3716100	1022500	2693600	17144000	9331300	7812400	0	0	0	0	0	0	48556	3154	45718	292679;292680;292681	392777;392778;392779	392778			3	
SVILEAFSSPSEEVK	1	Unmodified	1620.8247	0.82466798	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.02	1	7	7					8		4	7	7	5	76.434	72.32	2;3	2.3014E-15	65865	160511_QHF_FH_JSI10i_2	199.43	174.58			0.96962	0.98855	27.415	23	12	Median	1.1193	0.9389	16.656	4	1	Median	0.95426	1.1609	24.609	7	4	Median	0.99679	0.98855	33.911	7	4	Median	0.90841	0.92973	23.066	5	3	Median	2655200000	1488600000	1166500000	264620000	144750000	119870000	435340000	217240000	218100000	1066900000	582910000	484030000	888280000	543740000	344540000	48557	3343	45719	292682;292683;292684;292685;292686;292687;292688;292689;292690;292691;292692;292693;292694;292695;292696;292697;292698;292699;292700;292701;292702;292703;292704	392780;392781;392782;392783;392784;392785;392786;392787;392788;392789;392790;392791;392792;392793;392794;392795;392796;392797;392798;392799;392800;392801;392802;392803;392804;392805;392806;392807;392808;392809;392810;392811;392812;392813;392814	392804			35	
SVILEGDREHSSGAQIPVDLSELK	1	Unmodified	2578.3239	0.32385992	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	74.413	74.152	3;4	1.767E-28	66128	160511_QHF_FH_JSI11i_3	164.58	156.87			1.1781	0.93846	20.645	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.8183	0.9925	NaN	1	1	Median	1.0608	0.98385	14.599	2	0	Median	0.64199	0.67692	NaN	1	1	Median	230380000	126140000	104240000	0	0	0	53749000	31476000	22274000	158270000	79805000	78462000	18362000	14862000	3500800	48558	2510	45720	292705;292706;292707;292708	392815;392816;392817;392818;392819;392820;392821	392817			7	
SVILHLLSQLK	1	Unmodified	1249.7758	0.77580772	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	2	3			83.412	76.61	2;3	1.1424E-07	41306	160513_QHF_FH_JSI9Kac_6	116.77	104.81			0.81702	0.94393	102.93	5	4	Median	2.8838	2.513	0.48887	2	1	Median	0.26896	0.31799	62.293	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	460090000	258710000	201380000	141150000	34578000	106570000	318940000	224140000	94808000	0	0	0	0	0	0	48559	4512	45721	292709;292710;292711;292712;292713	392822;392823;392824;392825;392826	392823			5	
SVILISTVR	0	Unmodified	986.61243	0.61243078	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	1	2	64.443	54.594	2	0.0057668	29562	160513_QHF_FH_JSI11Kac_6	64.04	39.885			1.265	1.275	23.129	7	3	Median	1.4346	1.2301	24.025	2	1	Median	1.1717	1.3904	14.903	2	1	Median	1.265	1.1751	NaN	1	0	Median	1.5401	1.6423	35.805	2	1	Median	332350000	161950000	170400000	70195000	34603000	35592000	177490000	88675000	88819000	54163000	26467000	27696000	30499000	12208000	18291000	48560	4856	45722	292714;292715;292716;292717;292718;292719;292720	392827;392828;392829;392830;392831;392832	392828			6	
SVILPLPQNVK	1	Unmodified	1206.7336	0.73360855	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	6.14	4	5	2					5		3	4	4	5	72.633	69.032	2	0.00021903	60078	160511_QHF_FH_JSI12i_2	80.239	76.957			0.81579	0.90074	18.409	14	5	Median	0.81655	0.68831	28.377	3	0	Plateau	0.52696	0.64054	21.859	3	1	Plateau	0.81783	0.8168	14.64	3	2	Plateau	0.79667	0.88887	14.722	5	2	Median	485260000	260150000	225110000	74693000	37852000	36841000	124330000	70641000	53690000	158120000	83628000	74492000	128120000	68027000	60089000	48561	566	45723	292721;292722;292723;292724;292725;292726;292727;292728;292729;292730;292731;292732;292733;292734;292735;292736	392833;392834;392835;392836;392837;392838;392839;392840;392841;392842;392843;392844;392845;392846;392847;392848;392849;392850;392851;392852;392853;392854;392855;392856	392834			24	
SVIQQAEEK	1	Unmodified	1030.5295	0.52948901	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	16.883	16.304	2	3.8531E-05	13444	160511_QHF_FH_JSI9i_1	118.18	87.104			0.62026	0.67134	57.806	6	6	Median	0.72049	0.60112	64.213	2	2	Median	0.59622	0.69414	NaN	1	1	Median	0.48062	0.47691	43.637	2	2	Median	1.5523	1.6501	NaN	1	1	Median	385110000	252090000	133020000	161910000	110290000	51627000	87228000	56976000	30252000	109660000	73237000	36421000	26310000	11589000	14721000	48562	4886	45724	292737;292738;292739;292740;292741;292742;292743	392857;392858;392859;392860;392861;392862;392863	392860			7	
SVISGGLDALEFIGKK	2	Unmodified	1632.9087	0.90867238	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	89.876	89.309	3	8.9258E-06	77312	160511_QHF_FH_JSI12i_3	108.63	90.834			0.57773	0.7899	12.42	4	2	Linear	1.0945	0.91603	NaN	1	0	Median	0.74011	0.86328	NaN	1	0	Median	0.76017	0.72275	NaN	1	1	Median	0.67865	0.71756	NaN	1	1	Median	122340000	77642000	44700000	14641000	10878000	3763300	18204000	9194500	9009400	30808000	17336000	13473000	58689000	40235000	18454000	48563	4975	45725	292744;292745;292746;292747;292748	392864;392865;392866;392867;392868;392869;392870	392870			7	
SVISHSVTSDMQTIEQESPIMAK	1	Unmodified	2517.2091	0.20908944	4881	Q9NP61	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	77.054	76.718	3	1.6254E-38	68398	160511_QHF_FH_JSI11i_3	192.18	184.82			0.79879	1.0611	17.028	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.66533	0.81696	NaN	1	0	Median	1.1467	1.09	NaN	1	0	Median	0.79879	0.80657	NaN	1	0	Median	261570000	147680000	113880000	0	0	0	77025000	50054000	26970000	129180000	75834000	53341000	55367000	21794000	33573000	48564	4881	45726	292749;292750;292751;292752;292753	392871;392872;392873;392874;392875;392876;392877	392871			7	
SVISYKTEEK	2	Acetyl (K)	1224.6238	0.62378333	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.7	0.7						3	3	1			2	2	3	42.812	33.24	2	1.9752E-33	19297	160513_QHF_FH_JSI12Kac_4	197.06	184.83			0.912	1.0487	85.241	6	1	Median	NaN	NaN	NaN	0	0	Median	2.1671	2.5694	127.18	2	1	Median	0.62632	0.62084	NaN	1	0	Median	0.95496	1.0521	36.493	3	0	Median	117390000	68630000	48757000	0	0	0	37945000	19075000	18870000	34625000	23634000	10990000	44817000	25920000	18897000	48565	1454	45727	292754;292755;292756;292757;292758;292759;292760	392878;392879;392880;392881;392882;392883;392884;392885;392886;392887;392888	392886	1433		11	
SVIVGAGYIAVEMAGILSALGSK	1	Unmodified	2205.2079	0.20789087	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	14.5	1.5						1			1	1			1	102.38	93.381	3	0.00032476	42785	160513_QHF_FH_JSI12Kac_3	58.914	49.256			1.1163	1.0686	48.345	2	0	Median	1.7671	1.5041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70516	0.75919	NaN	1	0	Median	28246000	12486000	15760000	26575000	11619000	14956000	0	0	0	0	0	0	1671300	867440	803880	48566	765	45728	292761;292762	392889;392890	392889			1	
SVIVGLIK	1	Unmodified	827.54804	0.54803961	3437	Q8IX04	UEVLD	Ubiquitin-conjugating enzyme E2 variant 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		57.846	57.078	2	0.018251	48016	160511_QHF_FH_JSI10i_3	47.849	1.4228			0.95979	1.0143	13.242	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77594	0.92364	NaN	1	0	Median	1.1872	1.1139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	175440000	82899000	92544000	0	0	0	55278000	29970000	25307000	120170000	52928000	67237000	0	0	0	48567	3437	45729	292763;292764	392891;392892	392892			2	
SVIYHALSQK	1	Unmodified	1144.6241	0.6240581	718	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.67	5.19			2				1			1	2			43.641	39.222	2	0.0005407	21931	160511_QHF_FH_JSI10i_3	82.749	43.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48568	718	45730	292765;292766;292767	392893;392894;392895	392893			3	
SVIYYQVK	1	Unmodified	998.54368	0.54368251	2511	Q14185	DOCK1	Dedicator of cytokinesis protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		49.148	38.761	2	0.0094136	19897	160513_QHF_FH_JSI10Kac_5	68.915	50.184			0.91619	0.97691	3.6413	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87906	1.008	4.4677	2	0	Median	0.9936	0.97691	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10514000	5402800	5110900	0	0	0	5670900	3129100	2541800	4842900	2273700	2569200	0	0	0	48569	2511	45731	292768;292769;292770	392896;392897;392898	392898			3	
SVKPQILSVFGDIALAIGGEFKK	3	Unmodified	2416.373	0.37298236	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	1	2	2		100.03	95.919	3;4	1.9556E-28	50894	160513_QHF_FH_JSI9Kac_6	152.07	129.7			0.96487	0.81511	24.193	5	3	Median	0.96487	0.81511	NaN	1	0	Median	0.57314	0.68414	13.191	2	1	Median	1.1711	1.0843	4.6806	2	2	Median	NaN	NaN	NaN	0	0	Median	488000000	287520000	200490000	141670000	67686000	73989000	303610000	201710000	101900000	42716000	18117000	24599000	0	0	0	48570	2585	45732	292771;292772;292773;292774;292775	392899;392900;392901;392902;392903;392904	392901			6	
SVKQNTSSVGQK	2	Acetyl (K)	1303.6732	0.67319314	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	17.541	10.342	2	0.016787	7349	160513_QHF_FH_JSI12Kac_3	50.284	38.69			0.81595	0.89848	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81595	0.89848	NaN	1	0	Median	3136500	2175300	961140	0	0	0	0	0	0	981700	981700	0	2154800	1193600	961140	48571	3811	45733	292776;292777	392905;392906	392906	2944		2	
SVLADIKK	2	Unmodified	872.53312	0.53311783	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			26.642	25.318	3	0.005409	21012	160511_QHF_FH_JSI10i_3	53.089	23.927			0.92556	0.90097	17.649	2	1	Median	1.2571	1.0207	NaN	1	0	Median	0.68145	0.79526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63273000	31472000	31801000	38438000	15725000	22713000	24835000	15747000	9087700	0	0	0	0	0	0	48572	1581	45734	292778;292779	392907;392908	392907			2	
SVLADQGK	1	Unmodified	816.43413	0.43413207	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			10.863	10.351	2	0.0032488	8133	160511_QHF_FH_JSI10i_1	73.248	40.893			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48573	5124	45735	292780;292781	392909;392910	392909			2	
SVLAETEGILQK	1	Unmodified	1286.7082	0.70818166	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		75.463	64.785	2	0.011401	34542	160513_QHF_FH_JSI11Kac_5	73.499	53.738			0.88685	0.88067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88685	0.88067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3945300	2296300	1649000	0	0	0	0	0	0	3945300	2296300	1649000	0	0	0	48574	3328	45736	292782	392911	392911			0	
SVLALTHEGR	0	Unmodified	1081.588	0.58800695	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			28.659	27.278	2	0.00012467	22090	160511_QHF_FH_JSI9i_3	84.213	76.983			1.4769	1.2231	NaN	1	0	Median	1.4769	1.2231	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31643000	11560000	20083000	31643000	11560000	20083000	0	0	0	0	0	0	0	0	0	48575	5207	45737	292783;292784	392912;392913;392914	392913			3	
SVLCSTPTINIPASPFMQK	1	Unmodified	2090.054	0.054032765	4154	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	93.472	92.945	3	0.00013534	81703	160511_QHF_FH_JSI11i_2	65.949	51.477			1.9706	2.0805	47.56	3	3	Median	NaN	NaN	NaN	0	0	Median	1.1425	1.3857	NaN	1	1	Median	3.4079	3.5758	NaN	1	1	Median	1.9706	2.0805	NaN	1	1	Median	86456000	38381000	48075000	0	0	0	25230000	13618000	11612000	37601000	13910000	23691000	23625000	10853000	12772000	48576	4154	45738	292785;292786;292787;292788	392915;392916;392917;392918;392919	392917			5	
SVLDAAQIVGLNCLR	0	Unmodified	1627.8716	0.87157537	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	91.469	91.447	3	0.013567	81537	160511_QHF_FH_JSI11i_3	35.916	29.753			1.254	1.2423	28.765	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5946	1.5225	NaN	1	0	Median	0.98613	1.0136	NaN	1	1	Median	53303000	18726000	34577000	0	0	0	0	0	0	36460000	14038000	22423000	16843000	4688000	12155000	48577	3852	45739	292789;292790	392920;392921	392920			2	
SVLDFDFEK	1	Unmodified	1098.5233	0.523341	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	2	2									2	2		73.457	72.764	2	0.00079493	64772	160511_QHF_FH_JSI10i_2	73.985	61.458			1.2392	1.3953	0.55535	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1336	1.4007	NaN	1	0	Median	1.3547	1.3898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89468000	41978000	47490000	0	0	0	30942000	18018000	12924000	58526000	23960000	34566000	0	0	0	48578	2856	45740	292791;292792;292793;292794	392922;392923;392924;392925;392926;392927	392927			6	
SVLEGIIAFFSALDK	1	Unmodified	1608.8763	0.87630962	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			102.54	94.504	2;3	2.4177E-43	57193	160513_QHF_FH_JSI10Kac_6	182.25	146.74			0.68452	0.59351	40.647	3	1	Median	0.6823	0.58775	1.3797	2	1	Median	1.0407	1.1881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202920000	126290000	76629000	118940000	70663000	48273000	83987000	55631000	28356000	0	0	0	0	0	0	48579	5034	45741	292795;292796;292797;292798	392928;392929;392930;392931;392932	392931			5	
SVLELIPELNEK	1	Unmodified	1382.7657	0.76569654	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.679	3	7	3							1	3	5	4	91.34	90.938	2;3	1.2849E-23	80130	160511_QHF_FH_JSI9i_2	182.28	167.02			0.8523	0.8808	13.359	12	2	Median	1.0358	0.88455	NaN	1	0	Median	0.67501	0.84086	26.786	3	2	Median	0.85158	0.84202	8.0148	4	0	Median	0.85781	0.91938	7.0069	4	0	Median	2062300000	1035800000	1026500000	255080000	118750000	136320000	469680000	268270000	201410000	672710000	345040000	327660000	664840000	303690000	361150000	48580	1544	45742	292799;292800;292801;292802;292803;292804;292805;292806;292807;292808;292809;292810;292811	392933;392934;392935;392936;392937;392938;392939;392940;392941;392942;392943;392944;392945;392946;392947;392948;392949;392950;392951;392952;392953;392954;392955;392956;392957;392958;392959	392947			27	
SVLEQTK	1	Unmodified	803.43888	0.43888309	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.68	4	4				2	2			2	2	4	4	12.128	9.759	2	0.0099224	8221	160511_QHF_FH_JSI11i_1	77.058	24.375			0.93479	0.92237	15.566	11	0	Median	1.0646	0.89859	5.2573	2	0	Median	0.7977	0.96012	20.68	2	0	Median	1.0408	1.0193	17.608	4	0	Median	0.87048	0.90363	18.943	3	0	Median	3954000000	1930700000	2023300000	899070000	372490000	526580000	973980000	489110000	484880000	1164100000	559180000	604960000	916800000	509920000	406880000	48581	1417	45743	292812;292813;292814;292815;292816;292817;292818;292819;292820;292821;292822;292823	392960;392961;392962;392963;392964;392965;392966;392967;392968;392969;392970;392971;392972;392973;392974	392960			15	
SVLEQTKLK	2	Acetyl (K)	1086.6285	0.62847478	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	47.517	37.21	2	0.0024489	22042	160513_QHF_FH_JSI11Kac_4	83.948	21.948			0.62322	0.67294	55.418	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78272	0.9508	NaN	1	0	Median	0.32475	0.32133	NaN	1	0	Median	0.62322	0.67294	NaN	1	0	Median	41778000	26370000	15408000	0	0	0	8930100	4616800	4313300	26279000	17546000	8732800	6568900	4206600	2362300	48582	1417	45744	292824;292825;292826	392975;392976;392977;392978;392979	392978	1382		5	
SVLFQIFSQGISFPSWMK	1	Unmodified	2101.0707	0.070669108	5016	Q9NUU6	FAM105A	Inactive ubiquitin thioesterase FAM105A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	99.195	90.77	2;3	1.4206E-266	54643	160513_QHF_FH_JSI10Kac_6	346.54	292.28			0.88975	0.89699	14.656	8	2	Median	0.94467	0.80802	14.178	2	0	Median	0.76386	0.90951	0.79725	2	0	Median	1.2802	1.2284	19.446	3	2	Plateau	0.78334	0.824	NaN	1	0	Median	1802300000	954270000	848000000	481860000	238140000	243720000	1025000000	560690000	464360000	243370000	126560000	116810000	51999000	28881000	23119000	48583	5016	45745	292827;292828;292829;292830;292831;292832;292833;292834	392980;392981;392982;392983;392984;392985;392986;392987;392988;392989;392990;392991;392992	392991			13	
SVLFQIFSQGISFPSWMK	1	Oxidation (M)	2117.0656	0.06558373	5016	Q9NUU6	FAM105A	Inactive ubiquitin thioesterase FAM105A	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									3	2	1			97.859	90.445	3	9.2312E-06	53678	160513_QHF_FH_JSI10Kac_6	88.282	78.494			0.77431	0.78398	39.82	2	1	Median	0.69166	0.59159	NaN	1	1	Median	0.86683	1.0389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	215990000	118820000	97169000	61986000	27814000	34171000	154000000	91007000	62997000	0	0	0	0	0	0	48584	5016	45745	292835;292836;292837	392993;392994;392995	392995		2572	3	
SVLGDVGITEVFSDR	0	Unmodified	1592.8046	0.80460124	61	CON__P34955			yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.725	90.66	2	1.0069E-06	78709	160511_QHF_FH_JSI12i_3	130.1	114.56		+	0.68982	0.7077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68982	0.7077	NaN	1	1	Median	25754000	16906000	8848400	0	0	0	0	0	0	0	0	0	25754000	16906000	8848400	48585	61	45746	292838	392996	392996			1	
SVLGEADQK	1	Unmodified	945.47673	0.47672516	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.36	5.58		4				3	4			1	3	3	4	21.386	16.159	2	1.2292E-05	10127	160513_QHF_FH_JSI12Kac_4	108.98	58.371			0.92901	1.0382	17.722	11	1	Median	1.2063	1.0314	NaN	1	0	Median	0.92697	1.1138	3.7315	3	0	Plateau	0.76819	0.77847	19.447	3	0	Plateau	0.89747	0.99484	25.927	4	1	Median	379720000	183830000	195890000	96270000	39297000	56973000	87646000	45975000	41670000	96847000	47176000	49671000	98958000	51379000	47579000	48586	1664	45747	292839;292840;292841;292842;292843;292844;292845;292846;292847;292848;292849	392997;392998;392999;393000;393001;393002;393003;393004;393005;393006;393007;393008;393009	393007			12	
SVLGGQDQLR	0	Unmodified	1071.5673	0.5672715	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			28.494	28.175	2	0.028901	25031	160511_QHF_FH_JSI10i_1	47.603	32.934			1.2206	1.4446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2206	1.4446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58837000	37157000	21680000	0	0	0	58837000	37157000	21680000	0	0	0	0	0	0	48587	4458	45748	292850	393010	393010			1	
SVLGTDTKPGSK	2	Unmodified	1188.635	0.63501672	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	14.428	14.465	2;3	0.00013682	11747	160511_QHF_FH_JSI11i_3	72.705	46.662			0.98433	0.94955	23.119	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82159	0.77625	12.879	2	0	Median	1.1303	1.1239	8.2249	2	1	Median	363370000	175830000	187540000	0	0	0	0	0	0	161440000	77337000	84105000	201930000	98491000	103440000	48588	3239	45749	292851;292852;292853;292854;292855	393011;393012;393013;393014;393015	393012			5	
SVLHEVMEQQTLSIAK	1	Unmodified	1811.9451	0.94513424	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.19	5.21		4	9						3	7	5	2	2	66.543	64.222	2;3	8.7498E-52	55460	160511_QHF_FH_JSI12i_3	215.5	186.7			0.82195	0.78246	21.192	15	3	Median	0.87679	0.7509	29.331	6	3	Median	0.69435	0.78246	13.963	5	0	Median	0.83461	0.79024	4.8532	2	0	Median	0.88641	0.90627	7.6726	2	0	Median	1524700000	818650000	706020000	270910000	133960000	136950000	347340000	193400000	153930000	506780000	243350000	263430000	399640000	247940000	151700000	48589	1409	45750	292856;292857;292858;292859;292860;292861;292862;292863;292864;292865;292866;292867;292868;292869;292870;292871	393016;393017;393018;393019;393020;393021;393022;393023;393024;393025;393026;393027;393028;393029;393030;393031;393032;393033;393034;393035;393036;393037;393038;393039;393040;393041;393042;393043;393044;393045;393046;393047;393048;393049;393050;393051	393045			36	
SVLHEVMEQQTLSIAK	1	Oxidation (M)	1827.94	0.94004887	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		51.745	51.745	3	0.0024888	45818	160511_QHF_FH_JSI11i_3	56.959	38.594			0.4746	0.44803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4746	0.44803	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22444000	14963000	7480600	0	0	0	0	0	0	22444000	14963000	7480600	0	0	0	48590	1409	45750	292872	393052	393052		1056	1	
SVLIGEFLEK	1	Unmodified	1133.6332	0.6332258	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	80.426	79.859	2	7.2797E-05	69239	160511_QHF_FH_JSI12i_3	88.681	61.55			1.3459	1.2831	13.617	6	4	Median	1.4053	1.1806	NaN	1	1	Median	0.97815	1.196	NaN	1	1	Median	1.4689	1.4317	13.88	2	2	Median	1.3359	1.4272	16.682	2	0	Median	229370000	97216000	132160000	22653000	10109000	12544000	27258000	14718000	12540000	82136000	37846000	44290000	97326000	34542000	62785000	48591	301	45751	292873;292874;292875;292876;292877;292878;292879	393053;393054;393055;393056;393057;393058;393059;393060;393061;393062	393061			10	
SVLIMGR	0	Unmodified	774.44219	0.44219433	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	38.976	36.418	2	0.0041464	31026	160511_QHF_FH_JSI12i_3	99.919	62.891			0.77607	0.77059	15.118	4	0	Median	0.75245	0.60306	NaN	1	0	Median	0.67207	0.80949	NaN	1	0	Median	0.80044	0.73356	NaN	1	0	Median	0.84219	0.84813	NaN	1	0	Median	662070000	372520000	289550000	216460000	127300000	89160000	64064000	30320000	33744000	151170000	83982000	67188000	230380000	130920000	99461000	48592	2242	45752	292880;292881;292882;292883	393063;393064;393065;393066	393065			4	
SVLISLK	1	Unmodified	758.49019	0.49019038	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.35	2	4	4					2	3	4	5	3	3	53.351	49.219	2	0.0074664	40270	160511_QHF_FH_JSI9i_3	87.323	0			0.92215	0.94997	66.641	14	2	Median	1.2837	1.0636	11.869	4	0	Median	0.53162	0.60713	115.16	4	2	Median	0.99865	0.91382	2.4352	3	0	Plateau	0.82129	0.86949	10.506	3	0	Median	2469000000	1191400000	1277600000	435720000	182650000	253070000	486450000	255710000	230740000	689280000	336960000	352310000	857510000	416080000	441430000	48593	930	45753	292884;292885;292886;292887;292888;292889;292890;292891;292892;292893;292894;292895;292896;292897;292898	393067;393068;393069;393070;393071;393072;393073;393074;393075;393076;393077;393078;393079;393080;393081;393082;393083;393084;393085;393086;393087;393088;393089;393090;393091;393092	393080			26	
SVLISLKQAPLVH	1	Acetyl (K)	1445.8606	0.86059998	930	P09496	CLTA	Clathrin light chain A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.993	75.751	2	2.5104E-62	41590	160513_QHF_FH_JSI11Kac_6	218.52	168.4			0.83875	0.94636	19.334	4	0	Median	1.3442	1.1757	NaN	1	0	Median	0.86845	1.0351	NaN	1	0	Median	0.80268	0.75843	NaN	1	0	Median	0.81006	0.86525	NaN	1	0	Median	236150000	117930000	118220000	36003000	16272000	19731000	76180000	36471000	39709000	80071000	41674000	38397000	43897000	23512000	20385000	48594	930	45754	292899;292900;292901;292902	393093;393094;393095;393096;393097	393093	684		5	
SVLKIVEK	2	Acetyl (K)	956.59063	0.59063271	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		60.273	49.377	2	0.0071878	26993	160513_QHF_FH_JSI11Kac_5	82.287	38.479			0.032556	0.032064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.032556	0.032064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9364600	9145100	219560	0	0	0	0	0	0	9364600	9145100	219560	0	0	0	48595	2094	45755	292903	393098	393098	2207		1	
SVLLEQPRK	1	Unmodified	1068.6291	0.62914348	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			23.405	22.129	3	0.016142	17794	160511_QHF_FH_JSI9i_3	32.209	21.837			0.69105	0.65379	12.077	2	1	Median	0.90052	0.71208	NaN	1	0	Median	0.53031	0.60027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71025000	37892000	33133000	30193000	12269000	17924000	40831000	25622000	15209000	0	0	0	0	0	0	48596	5039	45756	292904;292905	393099;393100	393100			2	
SVLLLAYK	1	Unmodified	905.5586	0.5586043	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.47	6.47		3	4					4	4	4	4	4	3	67.495	62.384	2	4.8281E-05	33043	160513_QHF_FH_JSI9Kac_6	129.4	111.36			0.98786	0.92892	28.078	12	1	Median	1.09	0.92149	4.5954	4	0	Median	0.74693	0.86986	14.631	2	0	Median	0.98786	0.77271	47.319	4	1	Linear	0.8873	0.92285	0.47135	2	0	Median	1052400000	527860000	524570000	220950000	102530000	118420000	262780000	139290000	123490000	349070000	175160000	173920000	219630000	110890000	108740000	48597	2734	45757	292906;292907;292908;292909;292910;292911;292912;292913;292914;292915;292916;292917;292918;292919;292920	393101;393102;393103;393104;393105;393106;393107;393108;393109;393110;393111;393112;393113;393114;393115;393116;393117;393118;393119;393120	393116			19	
SVLLLAYKPMEGNFEEIAR	1	Unmodified	2179.1347	0.13472593	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.71		2	3						5	2	4	3	1	88.319	84.281	2;3	2.1912E-42	43644	160513_QHF_FH_JSI10Kac_6	196.22	175.56			0.91848	1.0133	15.469	10	2	Median	1.1415	0.97969	5.4372	2	0	Median	0.80938	0.94551	10.009	4	0	Median	1.2262	1.1537	29.201	3	2	Median	0.98328	1.0413	NaN	1	0	Median	2068300000	1120400000	947830000	377750000	187420000	190330000	1120000000	643070000	476980000	467160000	241770000	225390000	103310000	48169000	55142000	48598	2734	45758	292921;292922;292923;292924;292925;292926;292927;292928;292929;292930	393121;393122;393123;393124;393125;393126;393127;393128;393129;393130;393131;393132;393133;393134;393135;393136	393136			16	
SVLLLAYKPMEGNFEEIAR	1	Oxidation (M)	2195.1296	0.12964055	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.044	72.786	3	1.007E-12	39711	160513_QHF_FH_JSI11Kac_6	120.92	89.687			0.94935	0.99345	5.7098	4	0	Median	1.1882	1.0103	NaN	1	0	Median	0.83869	0.99174	NaN	1	0	Median	1.0594	0.99517	NaN	1	0	Median	0.85075	0.89226	NaN	1	0	Median	385690000	196500000	189190000	145060000	64442000	80619000	129150000	69584000	59565000	63407000	33159000	30248000	48072000	29315000	18757000	48599	2734	45758	292931;292932;292933;292934	393137;393138;393139;393140;393141;393142;393143	393138		2115	7	
SVLLQER	0	Unmodified	843.48142	0.48141661	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		4	2					2		1	2	3	2	26.605	23.632	2	0.02255	13844	160513_QHF_FH_JSI11Kac_5	67.981	0			0.90749	0.97763	32.76	8	1	Median	1.2405	1.0438	NaN	1	0	Median	1.3218	1.5604	54.192	2	1	Median	0.88416	0.86598	6.0216	3	0	Plateau	0.85898	0.94721	15.7	2	0	Median	656740000	308420000	348330000	92907000	34382000	58524000	166300000	78221000	88076000	323110000	158800000	164300000	74434000	37013000	37422000	48600	899	45759	292935;292936;292937;292938;292939;292940;292941;292942	393144;393145;393146;393147	393146			4	
SVLLQGEAGR	0	Unmodified	1028.5615	0.56145784	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	27.555	27.353	2	0.014295	22976	160511_QHF_FH_JSI11i_2	45.368	28.592			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48601	3508	45760	292943;292944	393148;393149	393148			2	
SVLLTGYLEYLIK	1	Unmodified	1510.8647	0.8646823	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	4.1		4	2	3						1	2	4	2	102.21	102.14	2	4.161E-53	89897	160511_QHF_FH_JSI11i_2	220.94	203.71			0.93944	0.95475	15.59	6	2	Median	1.1864	1.0066	NaN	1	0	Median	0.75436	0.94801	NaN	1	1	Median	1.189	1.1449	24.681	2	1	Median	0.84969	0.90647	4.4074	2	0	Median	774960000	374790000	400170000	161140000	72035000	89110000	96732000	54343000	42390000	325310000	162920000	162390000	191780000	85495000	106280000	48602	2757	45761	292945;292946;292947;292948;292949;292950;292951;292952;292953	393150;393151;393152;393153;393154;393155;393156;393157;393158;393159;393160	393155			11	
SVLMSLK	1	Unmodified	776.44661	0.44661101	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		43.379	42.606	2	0.013927	35596	160511_QHF_FH_JSI10i_3	67.032	42.034			1.1218	1.1954	23.591	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1627	1.4124	NaN	1	0	Median	1.0824	1.0118	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	227050000	116400000	110650000	0	0	0	80105000	35581000	44524000	146940000	80814000	66130000	0	0	0	48603	931	45762	292954;292955	393161;393162	393162			2	
SVLNNLK	1	Unmodified	786.45995	0.45995289	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			26.716	25.423	2	0.013926	21035	160511_QHF_FH_JSI10i_3	67.035	18.861			1.1536	1.3312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1536	1.3312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67411000	34700000	32711000	0	0	0	67411000	34700000	32711000	0	0	0	0	0	0	48604	1314	45763	292956	393163	393163			1	
SVLNNLKGDK	2	Acetyl (K)	1128.6139	0.61388734	1314	P29083	GTF2E1	General transcription factor IIE subunit 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	2	1	2	51.975	41.468	2	4.2105E-06	21440	160513_QHF_FH_JSI12Kac_5	120.09	56.611			1.0551	1.0815	18.766	6	0	Median	1.0586	0.8984	NaN	1	0	Median	0.75506	0.9012	29.138	2	0	Median	1.0705	1.0562	NaN	1	0	Median	1.0827	1.1815	1.7421	2	0	Median	69712000	35912000	33800000	8434900	3860500	4574400	24390000	13935000	10455000	9270100	5858800	3411300	27618000	12258000	15360000	48605	1314	45764	292957;292958;292959;292960;292961;292962	393164;393165;393166;393167;393168;393169;393170	393169	1242		7	
SVLNNQLLEMK	1	Unmodified	1287.6857	0.68567208	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1								2	3	1	64.679	63.607	2	3.4959E-14	55362	160511_QHF_FH_JSI11i_2	141.89	105.5			0.78441	0.91475	7.5506	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77824	0.96492	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79062	0.86719	NaN	1	1	Median	160300000	84757000	75539000	0	0	0	80318000	40516000	39803000	0	0	0	79978000	44241000	35737000	48606	1360	45765	292963;292964;292965;292966;292967;292968	393171;393172;393173;393174;393175;393176	393174			6	
SVLQAAAAAAAAASMQLPPPR	0	Unmodified	1991.0622	0.062229686	613	O94842	TOX4	TOX high mobility group box family member 4	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			55.781	54.872	3	0.043456	48373	160511_QHF_FH_JSI10i_2	15.896	5.9376			5.4315	6.688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.4315	6.688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	559600000	113900000	445690000	0	0	0	559600000	113900000	445690000	0	0	0	0	0	0	48607	613	45766	292969	393177	393177			1	
SVLQAQSASPIFTHVYAALVAIINSK	1	Unmodified	2727.496	0.49595105	4857	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	100.34	91.574	3;4	4.2873E-130	52563	160513_QHF_FH_JSI9Kac_6	250.05	210.04			0.83465	0.8486	21.969	6	2	Median	0.68054	0.57072	NaN	1	0	Median	0.73071	0.86849	NaN	1	0	Median	0.83465	0.79136	6.599	2	1	Median	0.94779	1.0031	13.653	2	1	Median	692200000	382190000	310010000	174040000	103950000	70089000	207260000	114350000	92912000	175850000	92206000	83646000	135040000	71676000	63367000	48608	4857	45767	292970;292971;292972;292973;292974;292975	393178;393179;393180;393181;393182;393183;393184;393185	393181			8	
SVLQDHFSK	1	Unmodified	1059.5349	0.53490874	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.888	23.87	3	0.0032063	19766	160511_QHF_FH_JSI12i_3	55.314	41.545			0.11976	0.12071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11976	0.12071	NaN	1	1	Median	196030000	178500000	17531000	0	0	0	0	0	0	0	0	0	196030000	178500000	17531000	48609	3811	45768	292976	393186	393186			1	
SVLQEDAEK	1	Unmodified	1017.4979	0.49785453	2648	Q15276	RABEP1	Rab GTPase-binding effector protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.965	15.903	2	0.00058064	13205	160511_QHF_FH_JSI9i_1	88.37	27.582			0.69991	0.56591	NaN	1	1	Median	0.69991	0.56591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49301000	29799000	19502000	49301000	29799000	19502000	0	0	0	0	0	0	0	0	0	48610	2648	45769	292977	393187	393187			1	
SVLQPSQQK	1	Unmodified	1013.5506	0.55055881	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2	0		3								1	1	1		13.237	12.748	2	0.0033228	10291	160511_QHF_FH_JSI9i_2	60.828	27.032			0.90381	0.93406	19.352	3	0	Median	1.0819	0.94293	NaN	1	0	Median	0.56735	0.67128	NaN	1	0	Median	0.90381	0.93406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82416000	40999000	41417000	31596000	12852000	18744000	15768000	10479000	5288700	35052000	17668000	17384000	0	0	0	48611	5507	45770	292978;292979;292980	393188	393188			1	
SVLSEGHQR	0	Unmodified	1011.5098	0.50975662	600	O76071	CIAO1	Probable cytosolic iron-sulfur protein assembly protein CIAO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		4	4							3	4	1		7.4809	7.0581	2;3	3.2646E-05	4940	160511_QHF_FH_JSI10i_3	81.163	66.013			0.91388	0.88676	14.646	8	0	Median	0.91697	0.87241	9.5139	3	0	Plateau	0.83527	0.98704	16.507	4	0	Median	1.0871	1.027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	693220000	344040000	349180000	168530000	85099000	83434000	361300000	179900000	181400000	163380000	79035000	84343000	0	0	0	48612	600	45771	292981;292982;292983;292984;292985;292986;292987;292988	393189;393190;393191;393192;393193;393194;393195;393196;393197;393198	393191			10	
SVLSILK	1	Unmodified	758.49019	0.49019038	5796				yes	yes	0	0	0	0		By matching		By MS/MS	16	0									2		1		1	58.31	49.125	2	0.018171	25672	160513_QHF_FH_JSI12Kac_6	72.138	2.1399	+		0.82876	0.91585	7.3454	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8363	0.96467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82129	0.86949	NaN	1	0	Median	166910000	79526000	87387000	0	0	0	85879000	44012000	41868000	0	0	0	81033000	35515000	45519000	48613	5796	45772	292989;292990	393199	393199			1	
SVLTGGLDALEFIGKK	2	Unmodified	1646.9243	0.92432245	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	3	2	2	93.806	93.338	3	8.3296E-09	82756	160511_QHF_FH_JSI11i_3	101.42	95.992			0.7869	0.77202	19	5	5	Median	1.1302	0.93372	NaN	1	1	Median	0.67345	0.78566	18.77	2	2	Median	0.80397	0.77202	NaN	1	1	Median	0.57649	0.58946	NaN	1	1	Median	238900000	127430000	111470000	28450000	12598000	15852000	55237000	29233000	26004000	54917000	24939000	29978000	100290000	60655000	39637000	48614	3420	45773	292991;292992;292993;292994;292995;292996;292997;292998	393200;393201;393202;393203;393204;393205;393206;393207;393208	393202			9	
SVLVPHGSK	1	Unmodified	922.52362	0.52361577	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	3.9			9						1	3	2	2	3	13.41	13.107	2;3	0.00064398	10539	160511_QHF_FH_JSI11i_3	76.827	66.01			0.92908	0.93665	44.388	8	3	Median	2.1699	1.7637	NaN	1	0	Median	1.0602	1.2493	39.279	2	0	Median	1.0984	1.0251	14.226	2	0	Median	0.8348	0.8495	41.333	3	3	Median	2174800000	1172700000	1002100000	77558000	34214000	43344000	396360000	205070000	191290000	504890000	231840000	273050000	1196000000	701590000	494440000	48615	2216	45774	292999;293000;293001;293002;293003;293004;293005;293006;293007;293008	393209;393210;393211;393212;393213;393214;393215;393216;393217;393218;393219;393220;393221	393211			12	
SVLVSAGNVK	1	Unmodified	972.5604	0.56039521	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.12	1	5	3				2	4		2	5	5	3	33.343	29.04	2	8.8468E-05	24594	160511_QHF_FH_JSI12i_2	85.731	31.181			0.91768	0.98376	41.768	15	1	Median	1.1562	0.99879	2.144	2	0	Median	0.79069	0.93086	15.959	5	0	Median	1.076	1.0463	72.951	5	1	Median	0.8144	0.89637	23.206	3	0	Median	887390000	445120000	442260000	109460000	47029000	62432000	183290000	110330000	72958000	330980000	156980000	174000000	263660000	130790000	132870000	48616	2517	45775	293009;293010;293011;293012;293013;293014;293015;293016;293017;293018;293019;293020;293021;293022;293023	393222;393223;393224;393225;393226;393227;393228;393229;393230;393231;393232;393233;393234;393235;393236;393237	393223			14	
SVLWWLPVEK	1	Unmodified	1255.6965	0.69649476	3594	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	2	2	3	3	98.447	95.62	2	7.1765E-07	87829	160511_QHF_FH_JSI12i_3	122.26	95.743			0.9583	0.94742	24.884	10	2	Median	1.0873	0.90504	23.38	2	0	Median	0.77857	0.93002	34.894	2	0	Median	1.3419	1.2896	35.294	3	1	Plateau	0.81739	0.84065	21.758	3	1	Median	1802000000	876950000	925050000	204290000	86510000	117780000	285940000	147660000	138290000	598180000	255470000	342710000	713590000	387310000	326280000	48617	3594	45776	293024;293025;293026;293027;293028;293029;293030;293031;293032;293033	393238;393239;393240;393241;393242;393243;393244;393245;393246	393244			8	
SVMDATQIAGLNCLR	0	Unmodified	1647.8073	0.80726055	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	4	10								2	6	4	2	75.664	75.009	2;3	2.7659E-66	64780	160511_QHF_FH_JSI12i_2	280.56	231.21			0.9748	1.0389	28.529	13	5	Median	1.2415	1.0704	11.778	2	1	Median	0.91263	1.0389	29.05	5	3	Median	0.90526	0.92299	25.952	4	1	Median	1.4767	1.6271	6.6375	2	0	Median	802460000	387390000	415070000	72512000	32791000	39721000	296760000	155100000	141660000	296980000	139290000	157700000	136210000	60216000	75989000	48618	1417	45777	293034;293035;293036;293037;293038;293039;293040;293041;293042;293043;293044;293045;293046;293047	393247;393248;393249;393250;393251;393252;393253;393254;393255;393256;393257;393258;393259;393260;393261;393262;393263;393264;393265;393266	393251			19	
SVMEELK	1	Unmodified	834.4157	0.41570481	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	29.471	28.829	2	0.0099224	25134	160511_QHF_FH_JSI10i_2	77.058	35.556			1.2241	1.1975	68.722	8	1	Median	1.5532	1.3397	NaN	1	0	Median	1.222	1.486	46.4	2	0	Median	2.5369	2.5695	107.9	3	1	Median	0.81438	0.88365	19.201	2	0	Median	1847200000	765370000	1081900000	290160000	125570000	164590000	416850000	194050000	222790000	713440000	235340000	478100000	426790000	210420000	216370000	48619	1952;3963	45778	293048;293049;293050;293051;293052;293053;293054;293055	393267;393268;393269;393270;393271;393272	393271			6	
SVMEELK	1	Oxidation (M)	850.41062	0.41061943	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	1	0		By MS/MS			2	0		1									1			29.752	28.819	2	0.016435	25258	160511_QHF_FH_JSI10i_2	72.789	45.827			0.976	1.2042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.976	1.2042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81824000	39990000	41834000	0	0	0	81824000	39990000	41834000	0	0	0	0	0	0	48620	1952;3963	45778	293056	393273	393273		1623	1	
SVMIDEDMTAR	0	Unmodified	1266.5584	0.55842266	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	3	3								1	1	1	3	44.082	43.206	2	0.00037255	37754	160511_QHF_FH_JSI9i_2	73.067	43.98			0.94719	0.97491	25.81	6	3	Median	1.2347	1.0603	NaN	1	0	Median	0.58253	0.68908	NaN	1	1	Median	0.91731	0.89638	NaN	1	0	Median	0.97803	1.0649	29.636	3	2	Median	267250000	136540000	130710000	35695000	13402000	22294000	58800000	37864000	20936000	55204000	27177000	28028000	117550000	58095000	59451000	48621	2403	45779	293057;293058;293059;293060;293061;293062	393274;393275;393276;393277	393277			4	
SVMNTAGNSAPSLFLK	1	Unmodified	1635.829	0.82904185	4802	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	70.01	69.198	2	5.6623E-15	59789	160511_QHF_FH_JSI12i_3	157.56	142.41			0.82972	0.94002	24.292	4	2	Linear	1.2538	1.0719	NaN	1	1	Median	1.114	1.3113	NaN	1	1	Median	0.84801	0.77612	NaN	1	0	Median	0.82306	0.82433	NaN	1	0	Median	170320000	92401000	77919000	7899700	2929900	4969800	16615000	10228000	6387300	70085000	40614000	29471000	75720000	38629000	37091000	48622	4802	45780	293063;293064;293065;293066	393278;393279;393280;393281;393282;393283	393282			6	
SVMSGDQLREDR	0	Unmodified	1391.6463	0.64632646	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				21.372	20.414	2	0.035617	17401	160511_QHF_FH_JSI9i_2	53.683	26.568			1.1485	0.99906	NaN	1	0	Median	1.1485	0.99906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19251000	8952400	10299000	19251000	8952400	10299000	0	0	0	0	0	0	0	0	0	48623	2591	45781	293067	393284	393284			1	
SVMTEEYK	1	Unmodified	985.44265	0.44264784	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			3	3	3	2	21.159	19.708	2	0.00045611	17374	160511_QHF_FH_JSI12i_1	107.66	88.934			0.80191	0.87093	45.949	11	3	Median	0.82422	0.68989	75.123	3	1	Plateau	0.60657	0.72709	14.168	3	0	Plateau	1.1188	1.0854	53.555	3	2	Median	1.021	1.1054	37.501	2	0	Median	2556700000	1299200000	1257500000	565720000	255590000	310130000	445310000	256110000	189200000	1015200000	521620000	493530000	530540000	265860000	264680000	48624	3966	45782	293068;293069;293070;293071;293072;293073;293074;293075;293076;293077;293078	393285;393286;393287;393288;393289;393290;393291;393292;393293;393294;393295;393296;393297;393298;393299;393300;393301	393290			17	
SVMTEEYK	1	Oxidation (M)	1001.4376	0.43756246	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5	5.2		3					1				1	2	1	19.584	17.113	2	0.0019615	16204	160511_QHF_FH_JSI11i_2	91.318	60.706			1.0215	1.0221	27.536	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1209	1.3653	NaN	1	0	Median	1.0215	1.0221	13.664	2	0	Median	0.6501	0.71666	NaN	1	0	Median	176640000	80615000	96026000	0	0	0	51226000	20980000	30246000	66234000	28392000	37841000	59181000	31242000	27939000	48625	3966	45782	293079;293080;293081;293082	393302;393303;393304;393305;393306;393307	393305		2370	6	
SVMTEEYKVPDGMVGFIIGR	1	Unmodified	2227.1017	0.10171124	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	96.593	96.496	3	3.6636E-11	85971	160511_QHF_FH_JSI11i_3	130.25	116.37			0.84258	0.86132	4.5256	5	2	Median	0.93435	0.84155	NaN	1	0	Median	0.73336	0.90247	6.3861	2	2	Median	0.92022	0.85605	NaN	1	0	Median	0.84258	0.86132	NaN	1	0	Median	238140000	133510000	104630000	36291000	20143000	16149000	54938000	31475000	23462000	78784000	43941000	34843000	68125000	37953000	30172000	48626	3966	45783	293083;293084;293085;293086;293087	393308;393309;393310;393311;393312;393313	393308			6	
SVNDQPSGNLPFLKPDDIQYFDK	2	Unmodified	2636.2758	0.27584709	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.624	5	6	1							3	2	2	5	91.114	90.655	3	5.9894E-24	79796	160511_QHF_FH_JSI11i_2	160.57	153.9			0.94111	0.9547	14.618	12	6	Median	0.98569	0.86658	12.993	3	2	Median	0.79365	0.9547	2.9297	2	0	Median	0.96161	0.95806	8.322	2	0	Median	1.0078	1.099	14.474	5	4	Median	1306900000	656330000	650580000	227310000	113830000	113480000	221810000	121920000	99894000	292780000	138180000	154600000	565020000	282400000	282610000	48627	542	45784	293088;293089;293090;293091;293092;293093;293094;293095;293096;293097;293098;293099	393314;393315;393316;393317;393318;393319;393320;393321;393322;393323;393324;393325;393326;393327;393328;393329;393330;393331;393332;393333;393334	393327			21	
SVNEILGLAESSPNEPK	1	Unmodified	1782.9	0.89995819	4782	Q9H8G2	CAAP1	Caspase activity and apoptosis inhibitor 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			73.69	73.495	3	0.035265	66519	160511_QHF_FH_JSI10i_1	30.712	24.589			2.2019	2.6003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2019	2.6003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73496000	23547000	49950000	0	0	0	73496000	23547000	49950000	0	0	0	0	0	0	48628	4782	45785	293100	393335	393335			1	
SVNELIYK	1	Unmodified	964.52295	0.52294707	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.57	6.02	4		4			4	3	5	1	4	5	5	7	46.305	40.912	2	4.9358E-05	36625	160511_QHF_FH_JSI10i_1	135.83	84.865			0.96205	0.92961	25.033	16	3	Median	1.0295	0.85171	17.647	3	0	Median	0.95563	1.1362	24.537	4	0	Median	0.96205	0.92961	5.3204	4	0	Median	0.7418	0.80605	34.05	5	3	Median	5576700000	2714500000	2862200000	792930000	364560000	428370000	1843300000	961970000	881360000	1751700000	827450000	924250000	1188700000	560490000	628250000	48629	1138	45786	293101;293102;293103;293104;293105;293106;293107;293108;293109;293110;293111;293112;293113;293114;293115;293116;293117;293118;293119;293120;293121	393336;393337;393338;393339;393340;393341;393342;393343;393344;393345;393346;393347;393348;393349;393350;393351;393352;393353;393354;393355;393356;393357;393358;393359;393360;393361;393362;393363	393349			28	
SVNELIYKR	1	Acetyl (K)	1162.6346	0.63462279	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			2	1	1	59.365	48.641	2	5.5908E-05	24858	160513_QHF_FH_JSI12Kac_5	105.52	77.347			1.2319	1.4806	101.41	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3051	1.5525	6.6983	2	0	Median	0.27243	0.26853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60995000	47653000	13342000	0	0	0	12534000	5936000	6598000	42949000	36205000	6744300	5512000	5512000	0	48630	1138	45787	293122;293123;293124;293125	393364;393365;393366;393367;393368	393367	992		5	
SVNELIYKR	1	Unmodified	1120.6241	0.6240581	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1	By MS/MS				2.5	0.5		1	1							2				33.306	32.07	3	0.0051068	26153	160511_QHF_FH_JSI9i_3	49.472	27.903			4.5464	3.7948	43.969	2	2	Median	4.5464	3.7948	43.969	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82186000	19111000	63075000	82186000	19111000	63075000	0	0	0	0	0	0	0	0	0	48631	1138	45787	293126;293127	393369;393370	393369			2	
SVNESLNNLFITEEDYQALR	0	Unmodified	2354.139	0.13901926	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.598	9	8	1							5	4	4	5	94.517	94.149	2;3	2.1878E-119	81123	160511_QHF_FH_JSI12i_2	334.47	304.53			0.99295	1.0917	12.015	18	4	Median	1.2962	1.1091	11.506	5	3	Median	0.95083	1.1417	5.3911	4	0	Median	1.1318	1.1503	8.2241	4	0	Median	0.90585	0.99632	13.345	5	1	Median	1687900000	843300000	844600000	250780000	113350000	137430000	543780000	297370000	246410000	573580000	268060000	305520000	319760000	164520000	155240000	48632	2155	45788	293128;293129;293130;293131;293132;293133;293134;293135;293136;293137;293138;293139;293140;293141;293142;293143;293144;293145	393371;393372;393373;393374;393375;393376;393377;393378;393379;393380;393381;393382;393383;393384;393385;393386;393387;393388;393389;393390;393391;393392;393393;393394;393395;393396;393397;393398;393399;393400	393377			30	
SVNEVMEWMNNVMNAQAK	1	Unmodified	2093.9333	0.9332657	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	101.72	101.69	3	5.1414E-08	88414	160511_QHF_FH_JSI12i_3	124.29	121.09			0.84498	0.94286	27.685	4	0	Median	0.72145	0.61809	NaN	1	0	Median	0.71288	0.88276	NaN	1	0	Median	1.2409	1.1852	NaN	1	0	Median	0.98965	1.007	NaN	1	0	Median	783070000	381360000	401720000	59617000	38867000	20750000	78957000	44498000	34458000	232110000	94672000	137430000	412390000	203320000	209080000	48633	3852	45789	293146;293147;293148;293149	393401;393402;393403;393404	393403			4	
SVNGLAFYDWDNTELIR	0	Unmodified	2011.964	0.96395543	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.6	5.71	1	3							1		1	2	2	97.656	95.641	2	0.0010368	87930	160511_QHF_FH_JSI10i_2	90.707	77.522			1.1267	1.2404	28.57	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0384	1.2688	NaN	1	1	Median	1.2226	1.2126	NaN	1	1	Median	1.4027	1.5142	45.173	2	2	Median	154430000	72284000	82150000	0	0	0	32441000	17216000	15226000	48102000	25731000	22371000	73891000	29338000	44553000	48634	1438	45790	293150;293151;293152;293153;293154	393405;393406;393407;393408;393409	393408			5	
SVNLLVVK	1	Unmodified	870.55385	0.55385327	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.639							2	4	1	1	2	3	1	65.362	54.727	2	0.0087403	27563	160513_QHF_FH_JSI12Kac_5	77.674	41.794			1.2674	1.3927	27.777	7	1	Median	1.2283	1.0392	NaN	1	0	Median	1.1608	1.393	43.937	2	0	Median	1.3887	1.3927	31.733	3	0	Median	1.2674	1.414	NaN	1	1	Median	49028000	21615000	27413000	7474400	2753300	4721100	14289000	6957500	7331200	23062000	9909500	13152000	4203700	1995000	2208700	48635	2485	45791	293155;293156;293157;293158;293159;293160;293161	393410;393411;393412;393413;393414;393415	393414			6	
SVNLTEQNSNNSAVPYK	1	Unmodified	1863.8963	0.8962698	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.087	40.873	2	0.038203	36221	160511_QHF_FH_JSI9i_1	44.616	34.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6357200	6357200	0	6357200	6357200	0	0	0	0	0	0	0	0	0	0	48636	693	45792	293162	393416	393416			1	
SVNPNKPATK	2	Unmodified	1054.5771	0.57710791	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	6.033	5.7964	2;3	1.7837E-08	3713	160511_QHF_FH_JSI11i_3	128.03	78.617			0.99342	1.0283	23.732	6	0	Median	1.4249	1.1907	NaN	1	0	Median	0.8084	0.9442	0.73236	2	0	Median	1.4174	1.3234	24.363	2	0	Median	0.77559	0.79382	NaN	1	0	Median	1199500000	410140000	789340000	102020000	38741000	63284000	235000000	126510000	108500000	750750000	185940000	564810000	111700000	58951000	52746000	48637	2248	45793	293163;293164;293165;293166;293167;293168	393417;393418;393419;393420	393417			4	
SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR	0	Unmodified	3866.9951	0.99506791	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.01	100.29	4	2.9292E-23	59455	160513_QHF_FH_JSI10Kac_6	108.56	102.54			1.3753	1.6505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3753	1.6505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153240000	77837000	75404000	0	0	0	153240000	77837000	75404000	0	0	0	0	0	0	48638	1063	45794	293169	393421	393421			1	
SVNVEQTDFHYNWLIYHLK	1	Unmodified	2405.1804	0.18043057	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	2	4	83.431	76.809	3;4	1.1138E-122	41750	160513_QHF_FH_JSI10Kac_6	255.27	232.9			0.88317	0.901	24.031	10	3	Median	0.81762	0.69441	27.67	2	1	Median	0.91623	1.0684	17.74	2	0	Median	0.81338	0.77994	23.755	2	1	Median	0.91619	0.94915	17.846	4	1	Median	2268200000	1252100000	1016100000	543350000	276840000	266510000	1058400000	597720000	460660000	484060000	287070000	196990000	182410000	90460000	91954000	48639	4681	45795	293170;293171;293172;293173;293174;293175;293176;293177;293178;293179	393422;393423;393424;393425;393426;393427;393428;393429;393430;393431;393432;393433;393434;393435	393434			13	
SVPADLSRPK	1	Unmodified	1068.5928	0.59275797	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	3	4	2	21.529	21.031	2;3	1.3357E-08	17605	160511_QHF_FH_JSI11i_3	131.5	101.08			1.0252	0.95381	22.294	11	3	Median	1.0533	0.88991	9.8077	2	0	Median	1.1147	1.3999	25.694	3	1	Plateau	0.98391	0.96264	18.119	4	1	Median	0.91492	0.94275	34.26	2	1	Median	2419800000	1287800000	1132000000	321610000	170640000	150980000	471210000	271420000	199790000	894010000	472280000	421730000	732910000	373420000	359490000	48640	1298	45796	293180;293181;293182;293183;293184;293185;293186;293187;293188;293189;293190	393436;393437;393438;393439;393440;393441;393442;393443;393444;393445;393446;393447;393448;393449;393450;393451;393452	393438			17	
SVPAFIDISEEDQAAELR	0	Acetyl (Protein N-term)	2030.9797	0.97966507	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	1	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	101.4	101.29	2	1.311E-29	91825	160511_QHF_FH_JSI12i_1	260.19	236.52			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48641	3222	45797	293191;293192;293193	393453;393454;393455	393453			3	
SVPENLLK	1	Unmodified	898.51238	0.51238239	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.3	2	3	1				1			1	2	2	2	44.869	42.547	2	0.0055642	38648	160511_QHF_FH_JSI12i_1	65.252	43.121			0.82998	0.84198	10.241	7	0	Median	0.90131	0.72662	NaN	1	0	Median	0.75719	0.9104	11.282	2	0	Median	0.80369	0.79598	7.9441	2	0	Median	0.80858	0.87808	1.3427	2	0	Median	1019900000	566160000	453710000	24173000	13272000	10901000	430210000	237470000	192740000	246560000	136020000	110550000	318920000	179400000	139520000	48642	2362	45798	293194;293195;293196;293197;293198;293199;293200	393456;393457;393458;393459;393460;393461;393462;393463	393458			8	
SVPGHDNK	1	Unmodified	852.40898	0.40897995	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43		6	1					7		1	4	4	5	4.8217	-0.068526	2;3	0.00076556	2161	160511_QHF_FH_JSI12i_2	98.523	80.144			1.026	1.1444	17.018	14	2	Median	0.92337	0.79021	NaN	1	1	Median	0.71704	0.8865	12.212	4	0	Linear	1.2157	1.2331	14.373	4	1	Median	1.0406	1.1698	6.1858	5	0	Median	2787600000	1437000000	1350600000	13103000	6384800	6718600	774260000	446620000	327640000	1129300000	517950000	611330000	870920000	466000000	404920000	48643	2490	45799	293201;293202;293203;293204;293205;293206;293207;293208;293209;293210;293211;293212;293213;293214	393464;393465;393466;393467;393468;393469;393470;393471;393472	393464			9	
SVPGTTSSPLVGDISPK	1	Unmodified	1640.8621	0.86211612	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.98	60.101	2	0.00035702	53263	160511_QHF_FH_JSI9i_1	79.466	52.68			0.31773	0.2992	16.245	2	2	Median	0.32365	0.26673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31192	0.33562	NaN	1	1	Median	83731000	55895000	27835000	46657000	31000000	15657000	0	0	0	0	0	0	37074000	24895000	12178000	48644	5481	45800	293215;293216	393473;393474	393474			2	
SVPHLQK	1	Unmodified	807.46029	0.46028724	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	16.197	13.66	2	0.0087169	10628	160511_QHF_FH_JSI12i_3	82.263	64.496			0.99871	1.0166	15.386	11	0	Median	1.5064	1.2762	20.981	3	0	Plateau	0.84342	0.99512	11.954	2	0	Median	1.2045	1.1606	11.756	3	0	Plateau	0.90813	0.9748	18.509	3	0	Median	8956000000	3761700000	5194400000	1099800000	507070000	592700000	1308100000	596760000	711320000	2793400000	1119000000	1674400000	3754800000	1538900000	2216000000	48645	870	45801	293217;293218;293219;293220;293221;293222;293223;293224;293225;293226;293227;293228	393475;393476;393477;393478;393479;393480;393481;393482;393483;393484;393485;393486;393487;393488;393489;393490;393491;393492;393493;393494;393495;393496;393497;393498;393499;393500;393501;393502;393503;393504;393505;393506;393507;393508;393509	393504			35	
SVPHLQKVFDR	1	Acetyl (K)	1366.7357	0.73573382	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	63.043	53.774	2;3	6.8006E-11	29211	160513_QHF_FH_JSI11Kac_6	137.17	96.816			0.75672	0.78278	64.103	6	0	Median	1.1603	1.0012	NaN	1	0	Median	0.98566	1.1566	3.4204	2	0	Median	0.31571	0.29988	4.7216	2	0	Median	0.58157	0.61201	NaN	1	0	Median	912330000	603470000	308860000	38416000	19747000	18668000	322550000	174860000	147690000	470290000	356540000	113750000	81072000	52321000	28751000	48646	870	45802	293229;293230;293231;293232;293233;293234;293235	393510;393511;393512;393513;393514;393515;393516;393517;393518;393519;393520;393521	393514	577		12	
SVPHYAAIEPDGNGLMIVSYK	1	Unmodified	2260.1198	0.11980414	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	78.699	78.311	3	3.1238E-10	69817	160511_QHF_FH_JSI11i_3	115.76	85.224			1.2597	1.1567	23.718	6	3	Median	1.3496	1.1288	NaN	1	0	Median	0.96227	1.1854	NaN	1	0	Median	1.1758	1.1185	12.007	3	2	Median	2.0195	2.0365	NaN	1	1	Median	438360000	200890000	237470000	67833000	28216000	39617000	82235000	43109000	39126000	204480000	96562000	107910000	83812000	33003000	50809000	48647	4225	45803	293236;293237;293238;293239;293240;293241;293242	393522;393523;393524;393525;393526;393527;393528;393529;393530	393524			8	
SVPLAATSMLITQGLISK	1	Unmodified	1829.0332	0.033220969	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		2	8						2	4	3	3	2	100.08	98.495	2;3	8.2318E-38	88163	160511_QHF_FH_JSI12i_3	236.22	205.88			1.1351	1.063	25.233	12	2	Median	1.3273	1.0725	29.129	4	1	Median	0.68233	0.77575	20.194	3	0	Median	1.3089	1.2452	19.892	3	0	Plateau	1.2214	1.2551	22.892	2	1	Median	1740500000	799220000	941250000	243750000	91812000	151940000	369570000	206170000	163400000	564080000	246850000	317230000	563070000	254390000	308680000	48648	5090	45804	293243;293244;293245;293246;293247;293248;293249;293250;293251;293252;293253;293254	393531;393532;393533;393534;393535;393536;393537;393538;393539;393540;393541;393542;393543;393544	393544			12	
SVPLALQR	0	Unmodified	882.5287	0.52870115	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.974	38.794	2	0.011658	33105	160511_QHF_FH_JSI12i_3	53.554	27.445			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48649	3922	45805	293255	393545	393545			1	
SVPLATAPMAEQR	0	Unmodified	1369.7024	0.70238478	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.87	5.08	8	4					3			3	5	4	3	48.672	45.933	2;3	2.6867E-05	42042	160511_QHF_FH_JSI12i_1	119.27	104.98			1.0872	1.1385	14.103	15	8	Median	1.6292	1.3287	12.734	3	2	Plateau	0.91129	1.1385	16.696	5	3	Median	1.2634	1.2314	13.011	4	3	Linear	1.0872	1.1604	16.737	3	0	Median	2490600000	1180400000	1310100000	559850000	259670000	300180000	607420000	326930000	280500000	872150000	382760000	489390000	451120000	211080000	240050000	48650	5708	45806	293256;293257;293258;293259;293260;293261;293262;293263;293264;293265;293266;293267;293268;293269;293270	393546;393547;393548;393549;393550;393551;393552;393553;393554;393555;393556;393557;393558;393559;393560;393561;393562;393563;393564	393549			19	
SVPLPTLK	1	Unmodified	853.5273	0.52730417	613	O94842	TOX4	TOX high mobility group box family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	54.434	53.583	2	0.013012	46411	160511_QHF_FH_JSI11i_2	52.716	32.196			0.93783	0.92998	12.796	5	0	Median	0.93783	0.81563	NaN	1	0	Median	0.75625	0.92998	NaN	1	0	Median	1.0013	0.96886	15.229	2	0	Median	1.0073	1.0857	NaN	1	0	Median	145590000	79492000	66101000	24428000	13333000	11095000	20075000	11661000	8413800	69498000	37373000	32125000	31593000	17126000	14467000	48651	613	45807	293271;293272;293273;293274;293275	393565;393566;393567;393568;393569;393570	393569			6	
SVPLSEPVTMDK	1	Unmodified	1301.6537	0.65370325	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	51.868	50.935	2	0.00067413	46205	160511_QHF_FH_JSI12i_1	80.763	57.335			0.95555	0.88526	7.7168	2	2	Median	1.139	0.93491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80163	0.83825	NaN	1	1	Median	213260000	112540000	100720000	92788000	53601000	39188000	0	0	0	0	0	0	120470000	58937000	61536000	48652	408	45808	293276;293277	393571;393572	393571			2	
SVPNQPSTNEILQAVLK	1	Unmodified	1836.9945	0.99452728	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	92.325	91.919	2	4.0373E-08	83714	160511_QHF_FH_JSI12i_1	138.02	124.21			0.98146	1.1535	5.9934	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98146	1.1535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0058	1.0737	6.1262	2	0	Median	83774000	42871000	40903000	0	0	0	36176000	18378000	17798000	0	0	0	47598000	24493000	23105000	48653	2997	45809	293278;293279;293280;293281	393573;393574;393575;393576;393577	393576			5	
SVPSALMK	1	Acetyl (Protein N-term)	873.46299	0.46298935	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	1	0	0			By MS/MS	By MS/MS	1	0	2											1	1	56.14	55.603	2	0.0064694	50578	160511_QHF_FH_JSI12i_1	47.849	39.076			3.0698	3.0882	193.7	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.618	12.149	NaN	1	1	Median	0.74685	0.78499	NaN	1	0	Median	50030000	16844000	33186000	0	0	0	0	0	0	19955000	402570	19552000	30075000	16441000	13633000	48654	1847	45810	293282;293283	393578;393579;393580	393580			3	
SVPSIHVPSPAVPK	1	Unmodified	1413.798	0.79799972	4123	Q96II8	LRCH3	Leucine-rich repeat and calponin homology domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.184	57.057	3	0.015919	50553	160511_QHF_FH_JSI11i_3	40.941	31.408			0.71094	0.67793	71.678	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.245	1.1254	NaN	1	1	Median	0.40597	0.40838	NaN	1	1	Median	196080000	158130000	37950000	0	0	0	0	0	0	33463000	16791000	16672000	162610000	141340000	21278000	48655	4123	45811	293284;293285	393581;393582	393581			2	
SVPTSTVFYPSDGVATEK	1	Unmodified	1883.9153	0.9152739	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	5.74	8	4	5		3	7	2	2		6	8	8	9	64.932	60.142	2;3	1.2148E-52	56374	160511_QHF_FH_JSI11i_1	212.11	196.57			0.94188	0.9779	18.276	30	3	Median	1.1206	0.94302	3.9283	6	0	Median	0.87435	1.035	7.9662	8	0	Median	0.94188	0.92284	12.502	8	2	Median	0.91835	0.993	30.579	8	1	Median	23825000000	10908000000	12917000000	5524800000	2395100000	3129700000	5338000000	2751000000	2587000000	6299600000	2850300000	3449400000	6662500000	2911200000	3751200000	48656	1322	45812	293286;293287;293288;293289;293290;293291;293292;293293;293294;293295;293296;293297;293298;293299;293300;293301;293302;293303;293304;293305;293306;293307;293308;293309;293310;293311;293312;293313;293314;293315;293316	393583;393584;393585;393586;393587;393588;393589;393590;393591;393592;393593;393594;393595;393596;393597;393598;393599;393600;393601;393602;393603;393604;393605;393606;393607;393608;393609;393610;393611;393612;393613;393614;393615;393616;393617;393618;393619;393620;393621;393622;393623;393624;393625;393626;393627;393628;393629;393630;393631;393632;393633;393634;393635;393636;393637;393638;393639;393640;393641;393642;393643;393644;393645;393646;393647;393648;393649;393650;393651;393652;393653	393589			71	
SVPTWLK	1	Unmodified	829.46979	0.46978929	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.51	3	4	7						1	2	4	5	4	51.363	49.804	2	0.0078673	43865	160511_QHF_FH_JSI11i_3	74.415	48.306			0.98917	0.95119	23.225	12	2	Median	1.0717	0.87734	4.291	2	0	Median	0.98248	1.1747	21.95	3	1	Median	0.94448	0.9583	31.242	3	1	Median	0.92029	0.97681	24.927	4	0	Median	13915000000	6760400000	7154100000	2151300000	1048500000	1102900000	2973700000	1527000000	1446700000	4594500000	2273500000	2321000000	4195100000	1911400000	2283700000	48657	1995	45813	293317;293318;293319;293320;293321;293322;293323;293324;293325;293326;293327;293328;293329;293330;293331	393654;393655;393656;393657;393658;393659;393660;393661;393662;393663;393664;393665;393666;393667;393668;393669;393670;393671;393672;393673;393674;393675;393676;393677;393678;393679;393680;393681;393682;393683	393656			30	
SVPTWLKLTSDDVK	2	Acetyl (K)	1629.8614	0.86138784	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		86.212	75.703	2	0.013174	39800	160513_QHF_FH_JSI11Kac_5	62.408	45.875			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2211800	2211800	0	0	0	0	0	0	0	2211800	2211800	0	0	0	0	48658	1995	45814	293332	393684	393684	2024		1	
SVPVTKPVPVTKPITVTK	3	Unmodified	1890.1554	0.15538502	4158	Q96KM6	ZNF512B	Zinc finger protein 512B	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				46.749	45.139	4	0.020343	37004	160511_QHF_FH_JSI9i_3	32.926	28.309			1.6697	1.3603	NaN	1	0	Median	1.6697	1.3603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43137000	14958000	28180000	43137000	14958000	28180000	0	0	0	0	0	0	0	0	0	48659	4158	45815	293333	393685;393686	393686			2	
SVPVTVDDDDDDNDPENR	0	Unmodified	2015.8192	0.81920127	1581	P46100	ATRX	Transcriptional regulator ATRX	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.399	36.987	2	2.6191E-08	33383	160511_QHF_FH_JSI11i_1	131.35	115.46			1.1537	1.1096	15.621	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78587	0.88294	NaN	1	0	Median	1.1636	1.1096	NaN	1	0	Median	1.1537	1.1904	NaN	1	0	Median	100290000	45813000	54479000	0	0	0	32722000	19552000	13169000	32675000	13034000	19641000	34895000	13226000	21669000	48660	1581	45816	293334;293335;293336	393687;393688;393689;393690;393691;393692;393693	393689			7	
SVQAGNPGGPGPGGR	0	Unmodified	1306.6378	0.63781068	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.4	0.49	3	2								2		1	2	13.219	12.637	2	0.00020943	10343	160511_QHF_FH_JSI12i_1	87.184	67.398			1.7107	1.5076	85.093	5	1	Median	2.9991	2.49	82.156	2	0	Median	NaN	NaN	NaN	0	0	Median	1.062	1.0131	NaN	1	0	Median	3.0359	3.3357	112.32	2	1	Median	240590000	64909000	175680000	106290000	24699000	81592000	0	0	0	32808000	15349000	17459000	101490000	24862000	76632000	48661	3966	45817	293337;293338;293339;293340;293341	393694;393695;393696;393697;393698	393696			5	
SVQALIK	1	Unmodified	757.46979	0.46978929	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.583	31.261	2	0.030977	26446	160511_QHF_FH_JSI12i_2	53.679	18.046			1.3871	1.4987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3871	1.4987	NaN	1	1	Median	42937000	18704000	24233000	0	0	0	0	0	0	0	0	0	42937000	18704000	24233000	48662	2716	45818	293342	393699	393699			1	
SVQANLDQSQR	0	Unmodified	1244.6109	0.61092723	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	3	1	17.095	16.536	2	5.2126E-07	14213	160511_QHF_FH_JSI12i_1	114.86	96.082			0.94919	0.99292	16.783	3	1	Median	1.4315	1.1777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84475	0.84193	NaN	1	1	Median	0.94919	0.99292	NaN	1	0	Median	233720000	142070000	91645000	43541000	19617000	23925000	0	0	0	130950000	93376000	37572000	59229000	29081000	30148000	48663	2787	45819	293343;293344;293345;293346;293347;293348	393700;393701;393702;393703;393704;393705;393706	393702			7	
SVQATTENK	1	Unmodified	976.48254	0.48253882	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.46	4	4	1			1				2	3	3	2	6.0905	5.0172	2	2.6488E-16	2487	160513_QHF_FH_JSI11Kac_3	161.79	100.83			0.89282	0.94354	9.9855	10	1	Median	1.0292	0.85708	5.0104	2	0	Median	0.81706	1.0344	3.5504	3	0	Plateau	0.87545	0.85736	15.567	3	0	Plateau	0.86057	0.94354	1.1008	2	1	Median	7202900000	4009800000	3193100000	1310600000	633310000	677260000	2066300000	1230100000	836260000	1565300000	855110000	710180000	2260700000	1291300000	969440000	48664	2340	45820	293349;293350;293351;293352;293353;293354;293355;293356;293357;293358	393707;393708;393709;393710;393711;393712;393713;393714;393715;393716;393717;393718;393719;393720	393712			13	
SVQATTENKELK	2	Acetyl (K)	1388.7147	0.7147236	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.296	25.46	2	1.9355E-06	15152	160513_QHF_FH_JSI11Kac_3	113.47	86.358			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2188900	2188900	0	0	0	0	0	0	0	2188900	2188900	0	0	0	0	48665	2340	45821	293359	393721	393721	2429		1	
SVQFLIQHGFNFNQQYAQGIPYHK	1	Unmodified	2863.4194	0.41943206	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	83.025	74.781	3;4	1.2958E-247	42195	160513_QHF_FH_JSI10Kac_6	328.13	300.52			0.85746	0.90469	34.849	8	1	Median	1.3386	1.1264	22.388	2	0	Median	0.46734	0.55709	12.692	2	0	Median	0.95421	0.89632	50.225	2	1	Median	0.85746	0.90469	5.4826	2	0	Median	5489500000	2848800000	2640700000	1289600000	632560000	656990000	3139500000	1666100000	1473400000	453080000	291510000	161570000	607380000	258630000	348740000	48666	4094	45822	293360;293361;293362;293363;293364;293365;293366;293367	393722;393723;393724;393725;393726;393727;393728;393729;393730;393731;393732;393733;393734;393735;393736	393735			15	
SVQHVVLQALFYLLDR	0	Unmodified	1900.0571	0.057067954	1564	P43378	PTPN9	Tyrosine-protein phosphatase non-receptor type 9	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.777	93.056	3	1.2796E-05	54462	160513_QHF_FH_JSI10Kac_6	99.021	79.986			0.53165	0.63163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.53165	0.63163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	162480000	105080000	57409000	0	0	0	162480000	105080000	57409000	0	0	0	0	0	0	48667	1564	45823	293368	393737	393737			1	
SVQMFELFYSQHFSGR	0	Unmodified	1961.9094	0.90941744	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.245	76.996	3	9.8661E-34	43753	160513_QHF_FH_JSI10Kac_6	173.34	160.71			0.8213	0.82054	35.209	4	1	Median	0.93359	0.7875	NaN	1	1	Median	0.72251	0.85497	NaN	1	0	Median	1.5302	1.4348	NaN	1	0	Median	0.58351	0.62255	NaN	1	0	Median	896740000	457470000	439270000	165300000	90889000	74415000	387580000	194020000	193560000	176390000	63877000	112510000	167470000	108690000	58779000	48668	2454	45824	293369;293370;293371;293372	393738;393739;393740;393741;393742;393743	393743			6	
SVQMFELFYSQHFSGR	0	Oxidation (M)	1977.9043	0.90433206	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				80.517	71.884	3	0.00031856	38995	160513_QHF_FH_JSI9Kac_6	105.77	90.249			0.61717	0.5301	NaN	1	1	Median	0.61717	0.5301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24066000	17286000	6780000	24066000	17286000	6780000	0	0	0	0	0	0	0	0	0	48669	2454	45824	293373	393744	393744		1960	1	
SVQMKASKMK	3	Acetyl (K);2 Oxidation (M)	1210.605	0.60497892	5791				yes	yes	1	0	2	2			By MS/MS		14	0							1					1		48.65	38.136	2	0.02114	22519	160513_QHF_FH_JSI11Kac_4	38.293	8.4833	+		0.82814	0.80589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82814	0.80589	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2577200	1442500	1134700	0	0	0	0	0	0	2577200	1442500	1134700	0	0	0	48670	5791	45825	293374	393745	393745	3561;3562	2748	0	
SVQNDSQAIAEVLNQLK	1	Unmodified	1855.964	0.96395543	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.596	6	8	1							2	3	5	5	99.373	99.248	2;3	3.2198E-40	86978	160511_QHF_FH_JSI11i_2	231.75	210.79			1.0155	1.0043	13.571	14	3	Median	1.0362	0.88394	1.1118	2	0	Median	0.82084	1.003	2.6745	3	0	Median	1.0491	1.0711	6.6534	5	3	Median	0.9232	1.0134	24.371	4	0	Median	1104100000	542900000	561220000	162700000	78933000	83771000	241780000	125130000	116660000	460060000	216870000	243190000	239570000	121970000	117600000	48671	1085	45826	293375;293376;293377;293378;293379;293380;293381;293382;293383;293384;293385;293386;293387;293388;293389	393746;393747;393748;393749;393750;393751;393752;393753;393754;393755;393756;393757;393758;393759;393760;393761;393762;393763;393764;393765;393766;393767;393768;393769;393770;393771;393772;393773;393774;393775;393776;393777;393778	393771			33	
SVQPEVELSSGGGDEGADEPR	0	Unmodified	2113.94	0.9399851	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	44.778	44.133	2	7.515E-05	40072	160511_QHF_FH_JSI12i_1	79.81	67.043			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48672	3643	45827	293390;293391	393779;393780	393779			2	
SVQPQSHKPQPTR	1	Unmodified	1488.7797	0.77972389	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			6.0487	5.5391	3	0.0058268	3577	160511_QHF_FH_JSI10i_3	44.511	25.436			0.90968	0.86866	48.78	2	0	Median	1.5132	1.2264	NaN	1	0	Median	0.54688	0.61525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74577000	36193000	38384000	43425000	18993000	24432000	31152000	17200000	13952000	0	0	0	0	0	0	48673	3132	45828	293392;293393	393781;393782	393781			2	
SVQPTSEER	0	Unmodified	1031.4884	0.48835248	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	3	2	2	8.2225	4.91	2	1.1463E-05	4893	160511_QHF_FH_JSI9i_1	110.87	88.786			0.8847	0.86466	6.2615	7	1	Median	1.127	0.91453	NaN	1	0	Median	0.71438	0.83035	2.2065	2	1	Median	0.92325	0.89594	7.5179	2	0	Median	0.8545	0.91308	7.7052	2	0	Median	969330000	526280000	443050000	227490000	105500000	121990000	260240000	147430000	112810000	260770000	149470000	111300000	220830000	123870000	96954000	48674	5298	45829	293394;293395;293396;293397;293398;293399;293400;293401	393783;393784;393785;393786;393787;393788;393789;393790;393791;393792;393793;393794;393795	393790			13	
SVQPTSEERIPK	1	Unmodified	1369.7201	0.72014333	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.34		2	4					1		1	1	3	2	20.612	20.423	2;3	5.6422E-05	16619	160511_QHF_FH_JSI12i_3	84.718	47.037			0.99159	0.94142	55.946	5	0	Median	3.3482	2.9404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99185	0.94519	0.56467	2	0	Median	0.75313	0.77862	2.0308	2	0	Median	508460000	259310000	249150000	103440000	35191000	68252000	0	0	0	206070000	104890000	101180000	198950000	119230000	79717000	48675	5298	45830	293402;293403;293404;293405;293406;293407;293408	393796;393797;393798;393799;393800;393801;393802;393803;393804;393805;393806	393804			11	
SVQSDFLLIILK	1	Unmodified	1374.8123	0.8122528	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.793	88.384	2	1.706E-15	49915	160513_QHF_FH_JSI11Kac_6	136.48	99.782			1.0045	0.90485	20.195	4	0	Median	0.97018	0.83236	NaN	1	0	Median	1.0442	1.2372	NaN	1	0	Median	1.0401	0.98366	NaN	1	0	Median	0.73662	0.79012	NaN	1	0	Median	205780000	105190000	100600000	51571000	24539000	27032000	44407000	22277000	22129000	80239000	44333000	35907000	29564000	14037000	15528000	48676	3267	45831	293409;293410;293411;293412	393807;393808;393809	393807			2	
SVQSQGFK	1	Unmodified	879.44503	0.4450311	1451	P36405	ARL3	ADP-ribosylation factor-like protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	3	3	2	13.032	9.9778	2	0.00035515	8342	160511_QHF_FH_JSI11i_2	111.01	64.656			0.78375	0.88544	14.362	9	2	Median	1.2826	1.1313	NaN	1	0	Median	0.67682	0.80114	12.854	3	1	Plateau	0.82611	0.80996	16.02	3	1	Median	0.80619	0.89199	5.9294	2	0	Median	667550000	348950000	318600000	100990000	43120000	57870000	213390000	128520000	84873000	234430000	115910000	118520000	118730000	61393000	57336000	48677	1451	45832	293413;293414;293415;293416;293417;293418;293419;293420;293421	393810;393811;393812;393813;393814;393815;393816;393817;393818;393819;393820	393817			11	
SVQTTLQTDEVK	1	Unmodified	1347.6882	0.6881745	622;533	O75477;O94905	ERLIN1;ERLIN2	Erlin-1;Erlin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	3	2	2	36.605	32.432	2	8.7233E-23	28838	160511_QHF_FH_JSI11i_1	175.49	147.28			0.93329	1.0001	7.5011	7	0	Median	1.253	1.0102	NaN	1	0	Median	0.77936	0.92453	2.6401	2	0	Median	1.0834	1.0595	3.1858	2	0	Median	0.89315	0.93761	9.1209	2	0	Median	1002500000	487660000	514850000	236940000	99609000	137340000	295490000	161520000	133980000	275830000	136120000	139710000	194230000	90409000	103820000	48678	533;622	45833	293422;293423;293424;293425;293426;293427;293428;293429	393821;393822;393823;393824;393825;393826;393827;393828;393829;393830;393831;393832;393833;393834;393835	393822			15	
SVSAFAPICNPVLCPWGKK	2	Unmodified	2130.0754	0.07543691	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		86.045	86.045	3	9.2885E-05	76805	160511_QHF_FH_JSI11i_3	65.943	48.348			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48679	979	45834	293430	393836	393836			1	
SVSDNDIR	0	Unmodified	904.42502	0.42502394	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.02	4	2				4	2			1	3	5	3	12.235	8.6683	2	0.00013168	5762	160513_QHF_FH_JSI12Kac_3	122.74	62.384			0.93811	0.94869	8.9729	11	2	Median	1.0216	0.80619	NaN	1	1	Median	0.77281	0.91483	8.4043	3	0	Median	0.97234	0.98867	8.5423	4	1	Median	0.93811	0.99722	4.472	3	0	Median	4322100000	2371900000	1950200000	1070600000	499640000	570910000	1136100000	694220000	441840000	1026300000	540390000	485890000	1089200000	637640000	451570000	48680	1846	45835	293431;293432;293433;293434;293435;293436;293437;293438;293439;293440;293441;293442	393837;393838;393839;393840;393841;393842;393843;393844;393845;393846;393847;393848;393849;393850;393851	393848			15	
SVSDNDIRK	1	Unmodified	1032.52	0.51998696	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.41		8	2				1			2	2	2	5	9.2428	8.2462	2;3	5.761E-07	6093	160511_QHF_FH_JSI12i_3	138.06	71.03			1.0233	1.0694	26.678	11	1	Median	1.138	0.96582	14.412	2	0	Median	1.227	1.5094	10.07	2	0	Median	1.0619	1.079	18.497	2	0	Median	0.9591	0.96928	25.04	5	1	Median	1279700000	656580000	623120000	234230000	123400000	110840000	290170000	137710000	152470000	267000000	132060000	134940000	488300000	263420000	224880000	48681	1846	45836	293443;293444;293445;293446;293447;293448;293449;293450;293451;293452;293453	393852;393853;393854;393855;393856;393857;393858;393859;393860;393861;393862;393863;393864;393865	393865			14	
SVSDQFYR	0	Unmodified	1000.4614	0.46140945	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	28.417	27.694	2	0.00021094	24233	160511_QHF_FH_JSI10i_2	110.12	87.186			0.94243	1.0164	8.9992	7	0	Median	1.2789	1.0593	5.8473	2	0	Median	0.95197	1.1211	NaN	1	0	Median	0.90687	0.90563	0.48529	2	0	Median	0.91245	0.98899	7.4509	2	0	Median	627220000	314750000	312470000	148970000	68747000	80225000	89779000	47558000	42220000	226790000	118510000	108290000	161670000	79939000	81735000	48682	1839	45837	293454;293455;293456;293457;293458;293459;293460;293461	393866;393867;393868;393869;393870	393870			5	
SVSDYDGK	1	Unmodified	869.37668	0.37667677	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.61	4	2			1	3				1	3	4	2	11.376	8.2488	2	1.5384E-05	7545	160511_QHF_FH_JSI11i_1	139.88	110.54			1.0496	1.1046	14.996	10	1	Median	1.1072	0.92737	NaN	1	0	Median	0.96171	1.1541	9.9373	3	0	Median	1.3292	1.2722	15.747	4	1	Median	0.94889	1.0206	4.9966	2	0	Median	10596000000	5202200000	5393800000	2140900000	1000700000	1140200000	3040600000	1583800000	1456800000	2459000000	1238600000	1220300000	2955500000	1379000000	1576500000	48683	867	45838	293462;293463;293464;293465;293466;293467;293468;293469;293470;293471	393871;393872;393873;393874;393875;393876;393877;393878;393879;393880	393872			10	
SVSEIFVELQGFLAAEQDIREEIRK	1	Acetyl (Protein N-term)	2947.5291	0.52910167	2688	Q15631	TSN	Translin	yes	yes	0	1	0	2		By MS/MS			16	0									1		1			100.38	94.66	3	3.5147E-34	55744	160513_QHF_FH_JSI10Kac_6	75.71	59.568			0.91606	1.0797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91606	1.0797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132900000	60139000	72756000	0	0	0	132900000	60139000	72756000	0	0	0	0	0	0	48684	2688	45839	293472	393881	393881			1	
SVSFFAK	1	Unmodified	784.41194	0.41194006	2289	Q0PNE2	ELP6	Elongator complex protein 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		42.528	42.528	2	0.030977	37549	160511_QHF_FH_JSI11i_3	53.679	13.476			1.8717	1.757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8717	1.757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31207000	11766000	19441000	0	0	0	0	0	0	31207000	11766000	19441000	0	0	0	48685	2289	45840	293473	393882	393882			1	
SVSFSDVFFK	1	Unmodified	1161.5706	0.57062555	355	O43676	NDUFB3	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	2	1	83.805	81.359	2	3.2213E-08	73135	160511_QHF_FH_JSI11i_2	125.82	109.48			0.89795	0.89736	28.55	5	3	Median	0.96489	0.80379	NaN	1	1	Median	0.85019	1.0473	NaN	1	1	Median	0.72416	0.70659	33.8	2	1	Median	1.0393	1.1637	NaN	1	0	Median	279280000	156010000	123270000	63456000	37871000	25586000	58995000	35141000	23854000	85438000	41622000	43816000	71390000	41377000	30013000	48686	355	45841	293474;293475;293476;293477;293478	393883;393884;393885;393886;393887	393886			5	
SVSGFLHFDTATK	1	Unmodified	1408.6987	0.69867961	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	70.938	61.353	3	0.035453	33193	160513_QHF_FH_JSI11Kac_6	24.225	15.712			1.4828	1.4996	19.632	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3838	1.3053	NaN	1	0	Median	1.589	1.7229	NaN	1	0	Median	63978000	22322000	41655000	0	0	0	0	0	0	52633000	18184000	34450000	11344000	4138700	7205700	48687	3862	45842	293479;293480	393888	393888			1	
SVSGSPEPAAK	1	Unmodified	1028.5138	0.51383895	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.139	8.8061	2	2.4898E-09	7744	160511_QHF_FH_JSI11i_1	129.38	73.372			0.7755	0.76736	12.564	7	1	Median	0.95196	0.76736	NaN	1	0	Median	0.69849	0.81081	25.114	2	1	Median	0.82007	0.81322	15.265	2	0	Median	0.74637	0.79803	7.5625	2	0	Median	902360000	527720000	374640000	263120000	140100000	123020000	229550000	149850000	79692000	179890000	96539000	83353000	229800000	141230000	88570000	48688	3463	45843	293481;293482;293483;293484;293485;293486;293487	393889;393890;393891;393892;393893;393894;393895;393896;393897;393898;393899	393889			11	
SVSHQTVQQLVLEK	1	Unmodified	1594.8679	0.8678702	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		4.25	4.47		3	4						1	4	2	2		46.594	44.529	2;3	5.3759E-07	37255	160511_QHF_FH_JSI10i_3	115.91	103.93			1.2431	1.1526	13.306	7	3	Median	1.5862	1.3915	9.1992	3	3	Median	0.97222	1.1307	2.7141	2	0	Median	1.1727	1.0862	7.4467	2	0	Median	NaN	NaN	NaN	0	0	Median	410480000	208470000	202000000	67127000	30931000	36196000	89757000	50854000	38903000	253590000	126690000	126910000	0	0	0	48689	681	45844	293488;293489;293490;293491;293492;293493;293494;293495	393900;393901;393902;393903;393904;393905;393906	393901			7	
SVSIGYLLVK	1	Unmodified	1077.6434	0.64339656	904	P08572	COL4A2	Collagen alpha-2(IV) chain;Canstatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.2			3					1	4	2	3	1	2	79.642	73.835	2	7.6304E-12	38678	160513_QHF_FH_JSI9Kac_6	148.52	140.59			1.0841	1.0412	15.981	8	1	Median	1.0856	0.93031	10.725	2	0	Median	0.67088	0.80416	19.986	3	1	Plateau	1.1377	1.1172	NaN	1	0	Median	1.1186	1.1737	11.743	2	0	Median	259730000	139230000	120500000	58353000	28515000	29838000	107620000	63256000	44361000	43060000	22318000	20743000	50700000	25140000	25560000	48690	904	45845	293496;293497;293498;293499;293500;293501;293502;293503	393907;393908;393909;393910;393911;393912;393913;393914;393915	393912			9	
SVSIPAPAYYAHLVAFR	0	Unmodified	1860.9887	0.98865404	5381	Q9UKV8	AGO2	Protein argonaute-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.57	6.43			4						3	2	2	2	1	88.345	84.668	3	4.9196E-24	43315	160513_QHF_FH_JSI10Kac_6	150.57	138.84			1.0597	1.0062	23.146	7	1	Median	1.434	1.1963	23.167	2	0	Median	0.79876	0.94123	3.6818	2	0	Median	1.332	1.2489	30.551	2	1	Median	0.82677	0.82509	NaN	1	0	Median	920630000	463880000	456750000	236100000	108420000	127680000	355170000	202790000	152380000	267810000	122810000	145000000	61543000	29848000	31695000	48691	5381	45846	293504;293505;293506;293507;293508;293509;293510	393916;393917;393918;393919;393920;393921	393921			6	
SVSIQEEQSAPSSEK	1	Unmodified	1604.753	0.7529596	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	24.681	24.068	2	6.5548E-41	20992	160511_QHF_FH_JSI11i_1	210.64	192.83			0.79314	0.85087	23.281	7	6	Median	0.96357	0.80504	31.01	2	2	Median	0.80834	0.96201	34.077	2	2	Median	1.01	0.9424	NaN	1	0	Median	0.70759	0.74812	18.201	2	2	Median	302890000	160130000	142760000	72423000	38261000	34162000	87668000	44083000	43585000	50421000	27509000	22913000	92377000	50275000	42102000	48692	3378	45847	293511;293512;293513;293514;293515;293516;293517	393922;393923;393924;393925;393926;393927;393928;393929	393922			8	
SVSLTGAPESVQK	1	Unmodified	1301.6827	0.68269519	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	5.63	4	4	2		1	2	3			3	6	4	3	41.399	37.162	2	8.7217E-53	33654	160511_QHF_FH_JSI12i_1	215.89	184.82			0.87623	0.93046	25.424	16	4	Median	1.3729	1.1493	25.163	3	0	Median	0.81085	0.93046	19.074	6	2	Median	0.85344	0.84195	19.762	4	1	Median	0.95805	1.0139	48.62	3	1	Median	4330300000	2097500000	2232800000	944330000	417020000	527310000	1085400000	571100000	514270000	1298300000	650650000	647670000	1002300000	458710000	543550000	48693	3911	45848	293518;293519;293520;293521;293522;293523;293524;293525;293526;293527;293528;293529;293530;293531;293532;293533	393930;393931;393932;393933;393934;393935;393936;393937;393938;393939;393940;393941;393942;393943;393944;393945;393946;393947;393948;393949;393950	393936			21	
SVSLVGEDERK	1	Unmodified	1217.6252	0.62518031	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	1	By MS/MS				2.5	0.5		1	1							2				33.991	32.561	2;3	0.00085499	16904	160511_QHF_FH_JSI9i_2	78.934	56.194			1.0005	0.81423	NaN	1	0	Median	1.0005	0.81423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47517000	23838000	23679000	47517000	23838000	23679000	0	0	0	0	0	0	0	0	0	48694	4096	45849	293534;293535	393951;393952	393952			2	
SVSPCSNVESR	0	Unmodified	1220.5455	0.54554978	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	13.921	13.586	2	0.0059291	11422	160511_QHF_FH_JSI12i_1	52.79	30.797			1.1173	1.2544	13.268	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96229	1.142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2974	1.3777	NaN	1	0	Median	106360000	44283000	62081000	0	0	0	45316000	19225000	26091000	0	0	0	61049000	25058000	35990000	48695	5474	45850	293536;293537	393953	393953			1	
SVSPTTEMVSNESVDYR	0	Unmodified	1899.852	0.85202172	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.905	49.227	2	7.6417E-12	43718	160511_QHF_FH_JSI9i_1	176.25	163.62			0.94164	0.95106	5.43	4	2	Median	1.0713	0.88806	NaN	1	1	Median	0.84435	1.0022	NaN	1	1	Median	0.94717	0.92559	NaN	1	0	Median	0.93615	0.97723	NaN	1	0	Median	209540000	103930000	105610000	45800000	23210000	22589000	45294000	22095000	23199000	55250000	27995000	27256000	63196000	30632000	32564000	48696	907	45851	293538;293539;293540;293541	393954;393955;393956;393957;393958;393959;393960	393960			6	
SVSSNVASVSPIPAGSK	1	Unmodified	1585.8312	0.83115034	5725	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	1	3	2	47.772	47.056	2	2.8318E-21	42526	160511_QHF_FH_JSI11i_1	209.79	188.96			1.0677	1.0552	16.803	7	7	Median	1.4413	1.1614	13.57	2	2	Median	0.80041	0.95976	NaN	1	1	Median	0.94692	0.91812	22.37	2	2	Median	0.93776	0.96616	19.38	2	2	Median	466670000	234240000	232440000	110850000	38376000	72470000	64485000	36030000	28456000	161460000	88469000	72995000	129880000	71363000	58516000	48697	5725	45852	293542;293543;293544;293545;293546;293547;293548;293549	393961;393962;393963;393964;393965;393966;393967;393968	393962			8	
SVSSPTSSNTPTPTK	1	Unmodified	1489.726	0.72601657	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	20.969	19.033	2	9.5808E-10	16004	160511_QHF_FH_JSI9i_1	146.36	135.83			1.0422	0.94138	10.058	5	1	Median	1.1423	0.94138	NaN	1	0	Median	0.74393	0.88374	NaN	1	0	Median	1.1094	1.0714	9.644	2	1	Median	0.88424	0.92732	NaN	1	0	Median	226350000	112010000	114330000	53376000	23133000	30243000	74600000	37523000	37077000	47764000	24558000	23205000	50608000	26800000	23809000	48698	2911	45853	293550;293551;293552;293553;293554;293555	393969;393970;393971;393972;393973;393974;393975;393976;393977;393978	393978			10	
SVSSPTSSNTPTPTKHLR	1	Acetyl (K)	1937.9807	0.98066813	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	39.574	30.455	3	7.3622E-06	16404	160513_QHF_FH_JSI9Kac_6	94.203	77.538			0.80348	0.7909	18.929	4	0	Median	0.84276	0.69321	NaN	1	0	Median	0.68524	0.81306	NaN	1	0	Median	0.76603	0.76935	NaN	1	0	Median	1.0271	1.0792	NaN	1	0	Median	31624000	17124000	14500000	6451200	3389600	3061600	11018000	6298700	4719300	7182800	3795400	3387400	6972100	3640000	3332000	48699	2911	45854	293556;293557;293558;293559	393979;393980;393981;393982;393983	393981	2712		5	
SVSSQSSSSVSSQVTTAGSGK	1	Unmodified	1956.9236	0.92360676	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	24.808	24.328	2	4.7169E-57	21292	160511_QHF_FH_JSI10i_1	214.82	204.63			1.1429	1.1101	27.681	5	3	Median	1.6515	1.3177	NaN	1	1	Median	0.70817	0.83218	NaN	1	0	Median	1.4024	1.3567	28.376	2	2	Median	0.89446	0.9208	NaN	1	0	Median	124780000	57561000	67217000	25251000	8153100	17098000	28231000	15401000	12831000	36727000	15227000	21500000	34569000	18781000	15788000	48700	5113	45855	293560;293561;293562;293563;293564	393984;393985;393986;393987;393988;393989;393990	393989			7	
SVSSSSYR	0	Unmodified	871.40356	0.40356022	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.21		5	1				2	3		2	3	3	3	7.9127	3.1428	2	0.0003324	5030	160511_QHF_FH_JSI10i_2	106.36	82.384			0.95175	0.99556	9.2908	10	1	Median	1.2672	1.0864	7.419	2	0	Median	0.91465	1.1005	7.0356	2	1	Median	0.89526	0.90964	0.91951	3	0	Plateau	0.878	0.96145	8.1172	3	0	Median	980810000	510370000	470440000	212330000	95671000	116660000	208950000	111200000	97752000	290030000	146390000	143640000	269490000	157110000	112380000	48701	913	45856	293565;293566;293567;293568;293569;293570;293571;293572;293573;293574;293575	393991;393992;393993;393994;393995;393996;393997;393998;393999;394000;394001;394002;394003	394002			13	
SVSSVLSSLTPAK	1	Unmodified	1274.7082	0.70818166	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	72.635	71.83	2	2.6599E-10	60134	160511_QHF_FH_JSI10i_3	147.37	120.85			0.86039	0.8139	21.842	4	0	Median	0.78496	0.64567	NaN	1	0	Median	0.65477	0.75966	NaN	1	0	Median	0.94307	0.87202	NaN	1	0	Median	1.0735	1.0813	NaN	1	0	Median	334960000	192740000	142220000	75858000	49098000	26760000	61840000	35886000	25954000	113860000	62546000	51316000	83397000	45210000	38187000	48702	2389	45857	293576;293577;293578;293579	394004;394005	394004			2	
SVSTMNLSK	1	Unmodified	965.48518	0.48518136	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	1	2	25.009	24.074	2	0.00016337	19972	160511_QHF_FH_JSI11i_2	88.177	68.18			0.81927	0.83865	105.79	5	2	Median	NaN	NaN	NaN	0	0	Median	1.3475	1.6463	115.89	2	1	Median	0.81927	0.83865	NaN	1	0	Median	0.80065	0.87991	162.37	2	1	Median	353190000	176740000	176450000	0	0	0	93770000	41356000	52414000	136710000	66143000	70570000	122710000	69245000	53461000	48703	2521	45858	293580;293581;293582;293583;293584	394006;394007;394008;394009	394008			4	
SVSTPSEAGSQDSGDGAVGSR	0	Unmodified	1949.8563	0.85625547	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	23.653	21.522	2	5.3414E-239	18800	160511_QHF_FH_JSI10i_1	347.45	339.54			0.93054	1.0357	13.811	5	0	Median	1.3185	1.0611	NaN	1	0	Median	0.92282	1.0684	NaN	1	0	Median	0.91319	0.89169	21.169	2	0	Median	0.93054	0.97775	NaN	1	0	Median	631330000	293230000	338110000	178640000	75334000	103310000	167750000	82863000	84891000	146640000	66444000	80193000	138300000	68584000	69714000	48704	2400	45859	293585;293586;293587;293588;293589	394010;394011;394012;394013;394014;394015;394016;394017	394015			8	
SVSTTGSLQR	0	Unmodified	1034.5356	0.53563702	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.969	13.746	2	0.046599	10949	160511_QHF_FH_JSI11i_2	36.334	10.597			0.73328	0.73091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73328	0.73091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33607000	16606000	17000000	0	0	0	0	0	0	33607000	16606000	17000000	0	0	0	48705	3266	45860	293590	394018	394018			1	
SVSTTNIAGHFNDESPLGLR	0	Unmodified	2114.0392	0.039245638	3915	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								2		1	66.417	65.326	3	4.3757E-07	54642	160511_QHF_FH_JSI10i_3	102.98	91.322			0.66688	0.71045	18.625	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.82838	0.93646	4.4235	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65549	0.68136	NaN	1	1	Median	102530000	58623000	43910000	0	0	0	63990000	34782000	29208000	0	0	0	38544000	23841000	14703000	48706	3915	45861	293591;293592;293593	394019;394020;394021	394019			3	
SVSVATGLNMMK	1	Unmodified	1236.6206	0.62062898	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	59.566	59.298	2	1.3169E-06	50988	160511_QHF_FH_JSI12i_3	120.68	99.219			0.99899	1.0212	29.449	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99899	1.0212	29.449	2	2	Median	53273000	27860000	25413000	0	0	0	0	0	0	0	0	0	53273000	27860000	25413000	48707	5310	45862	293594;293595	394022;394023	394022			2	
SVSVWSVAGR	0	Unmodified	1046.5509	0.55089316	4798	Q9H974	QTRTD1	Queuine tRNA-ribosyltransferase subunit QTRTD1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				51.298	49.701	2	0.018433	40756	160511_QHF_FH_JSI9i_3	65.305	53.937			0.81942	0.67278	NaN	1	0	Median	0.81942	0.67278	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21453000	9970000	11483000	21453000	9970000	11483000	0	0	0	0	0	0	0	0	0	48708	4798	45863	293596	394024	394024			0	
SVSWSQFNK	1	Unmodified	1081.5193	0.51925868	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	44.751	43.9	2	6.0307E-12	37439	160511_QHF_FH_JSI12i_3	167.24	146.69			1.0487	0.99934	13.405	4	0	Median	1.141	0.94	NaN	1	0	Median	0.96391	1.1172	NaN	1	0	Median	1.1591	1.0624	NaN	1	0	Median	0.82213	0.82782	NaN	1	0	Median	436880000	205600000	231280000	41984000	17885000	24099000	69653000	39994000	29660000	151130000	50443000	100690000	174110000	97281000	76834000	48709	1529	45864	293597;293598;293599;293600	394025	394025			1	
SVTAFFK	1	Unmodified	798.42759	0.42759012	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		6	6						3	3	5	4	3	51.753	48.472	2	0.0013943	40511	160511_QHF_FH_JSI10i_3	134.44	89.826			1.1912	1.0893	16.013	11	4	Median	1.3669	1.0893	16.242	3	0	Median	1.223	1.4424	3.9064	2	2	Median	1.0361	0.97823	14.711	3	1	Median	1.0074	1.0809	8.1445	3	1	Median	5006700000	2319200000	2687400000	785290000	327320000	457970000	824440000	410410000	414020000	1406000000	709760000	696210000	1991000000	871710000	1119200000	48710	2217	45865	293601;293602;293603;293604;293605;293606;293607;293608;293609;293610;293611;293612;293613;293614;293615	394026;394027;394028;394029;394030;394031;394032;394033;394034;394035;394036;394037;394038;394039;394040;394041;394042;394043;394044	394029			19	
SVTAHLAAK	1	Unmodified	896.50797	0.50796571	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				12.354	11.557	2	0.00022349	8976	160511_QHF_FH_JSI9i_3	84.743	58.804			1.1687	0.98009	NaN	1	0	Median	1.1687	0.98009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34771000	18791000	15980000	34771000	18791000	15980000	0	0	0	0	0	0	0	0	0	48711	5134	45866	293616	394045;394046	394046			2	
SVTDSIRDEYAFLQK	1	Unmodified	1770.8788	0.87882882	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		68.584	67.848	3	0.00026099	60304	160511_QHF_FH_JSI11i_3	84.41	67.524			1.9732	2.0638	45.917	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3117	1.4916	NaN	1	1	Median	2.9683	2.8554	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	802180000	274090000	528090000	0	0	0	166940000	92656000	74281000	635250000	181440000	453810000	0	0	0	48712	133	45867	293617;293618	394047;394048	394047			2	
SVTEGASAR	0	Unmodified	876.43011	0.43010932	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	5.9036	5.6739	2	0.0033082	3506	160511_QHF_FH_JSI11i_1	60.892	43.044			0.76995	0.77956	10.856	3	0	Median	NaN	NaN	NaN	0	0	Median	0.60803	0.70953	NaN	1	0	Median	0.91946	0.88104	NaN	1	0	Median	0.76995	0.77956	NaN	1	0	Median	422120000	238030000	184100000	0	0	0	139870000	82678000	57194000	150670000	85782000	64891000	131580000	69566000	62013000	48713	3090	45868	293619;293620;293621;293622	394049;394050;394051;394052;394053	394049			5	
SVTENQENK	1	Unmodified	1047.4833	0.4832671	5027	Q9NVC6	MED17	Mediator of RNA polymerase II transcription subunit 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		5.184	4.8773	2	4.2843E-06	2774	160511_QHF_FH_JSI11i_1	119.86	98.336			0.76318	0.71023	51.533	3	1	Median	1.6341	1.3522	NaN	1	0	Median	0.41218	0.48813	NaN	1	1	Median	0.76318	0.71023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	175880000	101710000	74171000	46052000	19429000	26623000	62000000	45614000	16385000	67827000	36664000	31163000	0	0	0	48714	5027	45869	293623;293624;293625;293626	394054;394055;394056;394057	394054			4	
SVTEQGAELSNEER	0	Unmodified	1547.7063	0.70634376	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	5.99	10	4	5		4	7	2	1	3	8	9	9	10	27.885	23.098	2;3	1.9172E-155	21106	160511_QHF_FH_JSI11i_1	298.36	245.04			0.97612	1.0036	14.737	33	4	Median	1.2203	1.0074	12.754	7	0	Median	0.80064	0.9711	12.995	9	0	Median	1.0285	1.0176	6.9393	7	1	Median	0.97282	1.0366	20.942	10	3	Median	28247000000	14415000000	13833000000	6145700000	2840900000	3304800000	5873900000	2946400000	2927500000	6420300000	3103800000	3316400000	9807400000	5523500000	4283900000	48715	2051	45870	293627;293628;293629;293630;293631;293632;293633;293634;293635;293636;293637;293638;293639;293640;293641;293642;293643;293644;293645;293646;293647;293648;293649;293650;293651;293652;293653;293654;293655;293656;293657;293658;293659;293660;293661;293662	394058;394059;394060;394061;394062;394063;394064;394065;394066;394067;394068;394069;394070;394071;394072;394073;394074;394075;394076;394077;394078;394079;394080;394081;394082;394083;394084;394085;394086;394087;394088;394089;394090;394091;394092;394093;394094;394095;394096;394097;394098;394099;394100;394101;394102;394103;394104;394105;394106;394107;394108;394109;394110;394111;394112;394113;394114;394115;394116;394117;394118;394119;394120	394061			63	
SVTEQGAELSNEERNLLSVAYK	1	Unmodified	2436.2132	0.21324684	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	2	3	79.187	78.611	3	1.2932E-15	70015	160511_QHF_FH_JSI11i_3	134.87	127.43			0.73232	0.68116	43.903	7	4	Median	0.81794	0.69497	NaN	1	1	Median	1.2664	1.5539	NaN	1	0	Median	0.51874	0.50065	43.542	2	1	Median	0.754	0.78781	20.728	3	2	Plateau	1138700000	621650000	517090000	141350000	90863000	50484000	273660000	127290000	146380000	197930000	135610000	62315000	525800000	267890000	257920000	48716	2051	45871	293663;293664;293665;293666;293667;293668;293669	394121;394122;394123;394124;394125;394126;394127;394128;394129;394130;394131;394132	394121			12	
SVTHANALTVMSK	1	Unmodified	1357.7024	0.70238478	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.761	30.761	2	3.5037E-07	26672	160511_QHF_FH_JSI11i_3	96.82	70.306			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48717	820	45872	293670	394133	394133			1	
SVTHFDSLAVIDIPGADTLDK	1	Unmodified	2213.1216	0.12157828	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	3	2	93.94	93.658	3	5.3268E-09	83059	160511_QHF_FH_JSI10i_2	91.64	74.923			1.1253	1.0839	18.726	6	5	Median	1.0557	0.89498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1959	1.1091	7.3907	3	3	Median	1.1617	1.2268	31.209	2	1	Median	215870000	103530000	112340000	21893000	12706000	9187000	0	0	0	116820000	53482000	63342000	77157000	37346000	39811000	48718	418	45873	293671;293672;293673;293674;293675;293676;293677	394134;394135;394136;394137;394138;394139;394140;394141	394140			8	
SVTKIYNYYK	2	Acetyl (K)	1319.6762	0.67615325	1471	P37837	TALDO1	Transaldolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.696							1	3	4	1	3	3	1	62.99	53.336	2	2.3381E-17	28851	160513_QHF_FH_JSI11Kac_6	168.83	142.31			0.58078	0.54869	125.67	6	3	Median	0.87337	0.7432	NaN	1	1	Median	0.47154	0.56091	269.53	2	2	Median	0.39289	0.37256	11.839	2	0	Median	0.81611	0.88263	NaN	1	0	Median	105530000	78906000	26626000	1623500	1395100	228440	19941000	11831000	8110100	66592000	54755000	11838000	17375000	10925000	6450000	48719	1471	45874	293678;293679;293680;293681;293682;293683;293684;293685	394142;394143;394144;394145;394146;394147;394148;394149;394150;394151	394144	1461		10	
SVTLESKK	2	Unmodified	890.5073	0.50729701	2115	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	8.5716	8.6447	2;3	0.0021363	6018	160511_QHF_FH_JSI12i_3	64.04	37.656			0.95349	0.92116	40.208	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0486	0.98361	NaN	1	0	Median	0.51239	0.5113	48.121	3	3	Plateau	664000000	393760000	270240000	0	0	0	0	0	0	105200000	42745000	62454000	558800000	351020000	207790000	48720	2115	45875	293686;293687;293688;293689;293690	394152;394153;394154;394155;394156	394155			5	
SVTLGYLFSQGHLTR	0	Unmodified	1677.8839	0.88385462	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	79.005	71.087	2;3	3.9495E-159	39510	160513_QHF_FH_JSI10Kac_6	328.71	302.67			1.1049	1.0023	16.531	6	0	Median	1.1427	0.98215	14.744	2	0	Median	0.74858	0.89545	4.0646	2	0	Median	1.2925	1.2324	NaN	1	0	Median	1.1635	1.2496	NaN	1	0	Median	3325200000	1763600000	1561600000	891170000	457300000	433870000	2165200000	1177500000	987660000	128690000	57388000	71302000	140200000	71419000	68784000	48721	1857	45876	293691;293692;293693;293694;293695;293696	394157;394158;394159;394160;394161;394162;394163;394164;394165	394164			8	
SVTLLIK	1	Unmodified	772.50584	0.50584045	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.13	1	4	2				3	7	4	4	7	5	5	56.982	50.377	2	6.2985E-05	26653	160513_QHF_FH_JSI9Kac_5	124.37	42.992			1.3138	1.2671	34.946	18	4	Median	1.2477	1.0894	33.477	4	0	Linear	0.92952	1.0421	46.666	6	2	Median	1.3177	1.3003	31.323	5	2	Median	1.3125	1.3727	13.082	3	0	Median	2888600000	1388300000	1500300000	513050000	225470000	287580000	906720000	463940000	442790000	894610000	434700000	459910000	574250000	264230000	310020000	48722	1494	45877	293697;293698;293699;293700;293701;293702;293703;293704;293705;293706;293707;293708;293709;293710;293711;293712;293713;293714;293715;293716;293717	394166;394167;394168;394169;394170;394171;394172;394173;394174;394175;394176;394177;394178;394179;394180;394181;394182;394183;394184;394185;394186;394187;394188;394189;394190;394191;394192	394168			27	
SVTLLIKGPNK	2	Acetyl (K)	1210.7285	0.72852317	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.497								5	4	2	2	2	3	70.637	60.761	2	1.9414E-14	32111	160513_QHF_FH_JSI9Kac_6	152.28	147.12			0.98943	1.1623	43.267	9	0	Median	1.4077	1.187	2.9736	2	0	Median	0.90411	1.07	12.603	2	0	Median	1.0304	1.0272	32.938	2	0	Median	0.9051	0.96084	82.14	3	0	Median	173720000	92485000	81237000	25531000	10487000	15044000	28989000	15233000	13756000	46229000	28985000	17244000	72972000	37780000	35192000	48723	1494	45878	293718;293719;293720;293721;293722;293723;293724;293725;293726	394193;394194;394195;394196;394197;394198;394199;394200;394201;394202;394203;394204;394205;394206;394207;394208;394209	394204	1506;1509		16	
SVTLYTVK	1	Unmodified	909.51713	0.51713341	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	4.18		1					3	4		1	2	2	3	46.797	37.785	2	0.010294	19715	160513_QHF_FH_JSI12Kac_5	60.59	43.204			0.98182	0.9904	24.76	7	2	Median	1.8509	1.5785	NaN	1	1	Median	0.77242	0.92773	9.245	2	0	Median	1.1439	1.1251	21.563	2	0	Median	0.84107	0.91331	25.98	2	1	Median	66073000	23785000	42288000	37611000	10502000	27109000	9277100	5172100	4104900	13845000	5290700	8554700	5339300	2819700	2519600	48724	4551	45879	293727;293728;293729;293730;293731;293732;293733;293734	394210;394211;394212;394213;394214;394215;394216;394217;394218;394219;394220	394219			11	
SVTNEDVTQEELGGAK	1	Unmodified	1675.7901	0.79007339	830	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	37.024	36.545	2	6.8578E-07	33152	160511_QHF_FH_JSI12i_1	124.51	96.31			0.62986	0.70946	47.897	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83588	0.99543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.47462	0.50564	NaN	1	1	Median	60424000	37864000	22560000	0	0	0	37057000	21007000	16050000	0	0	0	23367000	16857000	6510300	48725	830	45880	293735;293736;293737	394221;394222;394223;394224	394221			4	
SVTTVQWENSFVSVYSK	1	Unmodified	1959.9578	0.95780742	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.583	83.99	2	5.6435E-33	73886	160511_QHF_FH_JSI11i_2	155.42	141.61			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48726	3101	45881	293738	394225	394225			1	
SVTVDSMDEEK	1	Unmodified	1238.5336	0.53364769	1315	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.705	26.002	2	2.7273E-05	23093	160511_QHF_FH_JSI12i_1	105.17	94.336			1.1343	1.5349	11.31	3	2	Plateau	1.889	1.5349	NaN	1	1	Median	1.1343	1.3533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.609	1.6959	NaN	1	1	Median	178270000	88373000	89893000	48547000	21956000	26591000	67747000	32702000	35045000	0	0	0	61973000	33716000	28257000	48727	1315	45882	293739;293740;293741;293742	394226;394227;394228;394229;394230	394227			5	
SVVADTDQK	1	Unmodified	961.47164	0.47163978	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.6254	9.2599	2	1.8836E-06	6740	160511_QHF_FH_JSI9i_1	129.42	93.541			0.93288	1.0346	24.041	4	0	Median	0.81877	0.66731	NaN	1	0	Median	0.87507	1.0202	NaN	1	0	Median	1.1802	1.1415	NaN	1	0	Median	0.99451	1.0491	NaN	1	0	Median	725180000	366720000	358460000	135370000	54447000	80927000	210880000	108370000	102510000	160440000	75908000	84527000	218500000	128000000	90492000	48728	4673	45883	293743;293744;293745;293746	394231;394232;394233;394234;394235;394236	394235			6	
SVVANDASTR	0	Unmodified	1018.5043	0.5043369	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4.75	5.36	1	2					1			1		2	1	10.108	7.2717	2	0.0004074	6435	160511_QHF_FH_JSI11i_2	85.731	51.934			1.7034	1.652	31.444	3	0	Plateau	1.4067	1.2396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97061	0.94991	NaN	1	0	Median	1.7234	1.7774	NaN	1	0	Median	118000000	43277000	74720000	33077000	15396000	17682000	0	0	0	4515200	2367700	2147600	80405000	25514000	54891000	48729	5108	45884	293747;293748;293749;293750	394237;394238;394239;394240	394240			4	
SVVANFIVK	1	Unmodified	975.57532	0.57531699	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	59.141	58.31	2	0.00013044	47855	160511_QHF_FH_JSI9i_3	91.069	74.142			0.93146	0.89831	10.697	4	0	Median	1.0201	0.81817	NaN	1	0	Median	0.83282	0.93634	NaN	1	0	Median	1.0901	1.0454	NaN	1	0	Median	0.85052	0.86182	NaN	1	0	Median	676180000	379800000	296380000	196940000	100130000	96813000	141530000	86040000	55491000	168020000	86926000	81093000	169690000	106710000	62983000	48730	2789	45885	293751;293752;293753;293754	394241;394242;394243	394243			2	
SVVAPEHVK	1	Unmodified	964.53418	0.53418046	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	2	1	13.307	12.961	2;3	0.0013529	10116	160511_QHF_FH_JSI11i_2	69.423	33.543			0.91207	1.0529	32.026	7	0	Median	1.1449	0.99133	32.175	2	0	Median	0.97511	1.1611	13.829	2	0	Median	0.89076	0.87338	42.059	2	0	Median	0.58181	0.59379	NaN	1	0	Median	1089000000	580650000	508350000	364770000	182630000	182140000	239550000	132790000	106760000	236480000	113800000	122680000	248210000	151430000	96778000	48731	116	45886	293755;293756;293757;293758;293759;293760;293761	394244;394245	394244			2	
SVVAPPGAPK	1	Unmodified	921.52837	0.5283668	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.96	4	4				3	3			2	4	4	4	29.681	25.437	2	6.8028E-06	21182	160511_QHF_FH_JSI12i_2	107.66	95.76			0.69184	0.67203	19.675	14	2	Linear	0.84616	0.71616	34.356	2	1	Median	0.70619	0.84446	17.476	4	1	Linear	0.76891	0.75369	9.4968	4	0	Linear	0.8687	0.95369	16.779	4	0	Median	2990000000	1904600000	1085400000	993490000	743960000	249520000	841800000	584900000	256900000	617790000	293310000	324480000	536960000	282450000	254510000	48732	1069	45887	293762;293763;293764;293765;293766;293767;293768;293769;293770;293771;293772;293773;293774;293775	394246;394247;394248;394249;394250;394251;394252;394253;394254;394255;394256;394257;394258;394259;394260;394261;394262;394263;394264;394265	394249			18	
SVVAPPGAPKK	2	Unmodified	1049.6233	0.62332982	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.1		7	9					3	1	6	6	5	3	20.475	17.822	2;3	4.908E-05	14886	160511_QHF_FH_JSI11i_3	81.017	66.337			0.98824	0.99102	25.638	17	6	Median	1.2726	1.1128	30.614	5	4	Median	0.89938	1.0729	35.31	4	2	Median	0.98824	0.94667	13.193	5	0	Median	0.74885	0.74865	15.965	3	0	Plateau	3583400000	1919300000	1664200000	336490000	150030000	186460000	819690000	388260000	431430000	870980000	461360000	409620000	1556300000	919620000	636670000	48733	1069	45888	293776;293777;293778;293779;293780;293781;293782;293783;293784;293785;293786;293787;293788;293789;293790;293791;293792;293793;293794;293795	394266;394267;394268;394269;394270;394271;394272;394273;394274;394275;394276;394277;394278;394279;394280;394281;394282;394283;394284;394285;394286;394287;394288;394289	394268			22	
SVVATTR	0	Unmodified	732.413	0.41300269	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	7.8577	7.4799	2	0.0074664	5340	160511_QHF_FH_JSI9i_2	87.323	26.535			0.88396	1.0529	29.397	5	0	Linear	1.0982	0.93609	NaN	1	0	Median	0.78765	0.95496	NaN	1	0	Median	0.73443	0.73499	50.818	2	0	Median	0.88396	0.99056	NaN	1	0	Median	1093300000	559880000	533430000	206110000	98766000	107350000	242320000	127170000	115150000	371540000	189410000	182130000	273330000	144530000	128800000	48734	3250	45889	293796;293797;293798;293799;293800	394290;394291;394292;394293	394292			4	
SVVDFIQK	1	Unmodified	934.51238	0.51238239	5326	Q9UI42	CPA4	Carboxypeptidase A4	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	53.198	52.635	2	0.005359	45540	160511_QHF_FH_JSI11i_2	65.88	21.269			1.0794	1.2831	29.596	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0794	1.2831	NaN	1	0	Median	0.91714	0.95152	NaN	1	0	Median	1.6657	1.7198	NaN	1	0	Median	62170000	31865000	30306000	0	0	0	15438000	9094700	6343500	22749000	13294000	9455100	23983000	9476200	14507000	48735	5326	45890	293801;293802;293803	394294	394294			1	
SVVEFLQGYIGVPHGGFPEPFR	0	Unmodified	2431.2325	0.23246614	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	94.453	86.872	3	1.2486E-49	46445	160513_QHF_FH_JSI12Kac_6	189.11	171.96			0.84354	0.95929	10.689	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85885	1.0346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8285	0.88946	NaN	1	0	Median	447800000	249180000	198620000	0	0	0	293520000	167870000	125650000	0	0	0	154280000	81304000	72973000	48736	1002	45891	293804;293805	394295;394296	394295			2	
SVVFFYIK	1	Unmodified	1001.5586	0.5586043	3007	Q5XPI4	RNF123	E3 ubiquitin-protein ligase RNF123	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.429	73.182	2	0.00038236	41039	160513_QHF_FH_JSI10Kac_6	114.6	98.4			0.95212	0.9524	22.108	4	0	Median	0.97134	0.84116	NaN	1	0	Median	0.93327	1.0783	NaN	1	0	Median	1.2256	1.1538	NaN	1	0	Median	0.66375	0.71633	NaN	1	0	Median	234870000	111980000	122890000	46487000	23797000	22690000	81993000	36963000	45030000	79274000	34966000	44308000	27115000	16254000	10861000	48737	3007	45892	293806;293807;293808;293809	394297;394298;394299;394300;394301;394302;394303;394304	394303			8	
SVVFLLNSPHPLVWHLK	1	Unmodified	1985.1251	0.12508794	2205	Q03167	TGFBR3	Transforming growth factor beta receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	84.846	77.121	2;4	3.1477E-96	43505	160513_QHF_FH_JSI10Kac_6	232.37	208.03			0.7876	0.83715	22.83	5	0	Median	0.96424	0.83715	NaN	1	0	Median	0.59968	0.71617	26.543	2	0	Median	1.1801	1.1287	NaN	1	0	Median	0.7876	0.82808	NaN	1	0	Median	1235500000	659220000	576290000	353430000	152550000	200890000	596400000	394770000	201630000	247390000	90367000	157030000	38282000	21540000	16743000	48738	2205	45893	293810;293811;293812;293813;293814	394305;394306;394307;394308;394309;394310	394310			5	
SVVFRPPNPWTMAIMNVLAELHQEHDLK	1	Unmodified	3271.6634	0.66344386	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.661	90.941	5	0.00045955	52754	160513_QHF_FH_JSI10Kac_6	50.294	41.305			1.2408	1.4924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2408	1.4924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149150000	81548000	67598000	0	0	0	149150000	81548000	67598000	0	0	0	0	0	0	48739	21	45894	293815	394311	394311			0	
SVVGLHAASK	1	Unmodified	967.54508	0.5450795	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	15.747	14.965	2;3	0.00050072	11872	160511_QHF_FH_JSI9i_3	71.349	44.965			0.73992	0.77208	21.463	5	1	Median	1.1429	0.92011	4.8681	2	0	Median	0.56586	0.64983	24.377	2	1	Median	NaN	NaN	NaN	0	0	Median	0.73992	0.7402	NaN	1	0	Median	235670000	127910000	107760000	103000000	51503000	51492000	99570000	58210000	41359000	0	0	0	33103000	18196000	14907000	48740	4805	45895	293816;293817;293818;293819;293820;293821;293822	394312;394313;394314;394315;394316;394317;394318	394315			6	
SVVGTSSLR	0	Unmodified	904.49779	0.49779495	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			21.226	20.337	2	0.027043	17282	160511_QHF_FH_JSI9i_2	48.794	32.65			1.1454	1.1542	51.108	2	2	Median	1.9235	1.6566	NaN	1	1	Median	0.6821	0.80414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36709000	16908000	19801000	19864000	6043600	13821000	16844000	10864000	5980400	0	0	0	0	0	0	48741	901	45896	293823;293824	394319;394320	394319			2	
SVVLMSHLGRPDGVPMPDK	1	Oxidation (M)	2050.034	0.033966025	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.99			11						25	11	9	9	7	60.548	53.618	3;4	3.3157E-13	30011	160513_QHF_FH_JSI10Kac_6	129.12	71.045			0.93884	0.96368	19.045	35	12	Median	1.1283	0.96368	10.366	11	2	Median	0.7958	0.94418	25.029	8	3	Median	0.92073	0.86001	25.137	9	3	Median	0.93374	0.99913	6.7448	7	4	Median	1752500000	921370000	831160000	603150000	286250000	316910000	578340000	335880000	242450000	410920000	214940000	195980000	160110000	84298000	75814000	48742	775	45897	293825;293826;293827;293828;293829;293830;293831;293832;293833;293834;293835;293836;293837;293838;293839;293840;293841;293842;293843;293844;293845;293846;293847;293848;293849;293850;293851;293852;293853;293854;293855;293856;293857;293858;293859;293860	394321;394322;394323;394324;394325;394326;394327;394328;394329;394330;394331;394332;394333;394334;394335;394336;394337;394338;394339;394340;394341;394342;394343;394344;394345;394346;394347;394348;394349;394350;394351;394352;394353;394354;394355;394356;394357;394358;394359;394360;394361;394362;394363;394364;394365;394366;394367;394368;394369;394370;394371;394372;394373;394374;394375;394376;394377;394378;394379	394378		286;287	57	
SVVLMSHLGRPDGVPMPDK	1	Unmodified	2034.0391	0.039051403	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.43		3	10						8	5	5	7	4	66.696	62.305	2;3;4	8.7536E-46	33911	160513_QHF_FH_JSI10Kac_6	188.84	98.122			1.0351	0.98586	36.215	18	3	Median	0.92136	0.77157	17.27	5	1	Median	0.77756	0.97036	22.709	5	0	Median	0.86883	1.0804	17.492	4	0	Linear	1.2661	1.3464	67.973	4	2	Median	7405900000	3244800000	4161100000	1482200000	742270000	739890000	3003500000	1277800000	1725700000	2601900000	1089000000	1512900000	318330000	135750000	182580000	48743	775	45897	293861;293862;293863;293864;293865;293866;293867;293868;293869;293870;293871;293872;293873;293874;293875;293876;293877;293878;293879;293880;293881	394380;394381;394382;394383;394384;394385;394386;394387;394388;394389;394390;394391;394392;394393;394394;394395;394396;394397;394398;394399;394400;394401;394402;394403;394404;394405;394406;394407;394408;394409;394410;394411;394412;394413;394414;394415;394416;394417;394418;394419;394420;394421;394422	394421			43	
SVVLMSHLGRPDGVPMPDK	1	2 Oxidation (M)	2066.0289	0.028880647	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	5	1	2	2	53.877	44.513	3;4	4.2337E-06	23418	160513_QHF_FH_JSI9Kac_6	77.08	63.349			1.1225	1.0582	25.175	7	3	Median	1.1826	1.0011	29.927	3	2	Plateau	0.70197	0.83921	NaN	1	0	Median	0.96222	0.91496	20.571	2	1	Median	0.99782	1.0776	NaN	1	0	Median	156990000	71640000	85350000	74326000	31309000	43017000	39262000	22861000	16401000	19469000	9929000	9540500	23933000	7541300	16392000	48744	775	45897	293882;293883;293884;293885;293886;293887;293888;293889;293890;293891	394423;394424;394425;394426;394427;394428;394429;394430;394431;394432;394433	394425		286;287	11	
SVVLMSHLGRPDGVPMPDKYSLEPVAVELK	2	Acetyl (K)	3304.72	0.71995568	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By matching	16	0									6		3	2	1	88.16	80.614	3;4;5	7.5742E-290	46146	160513_QHF_FH_JSI10Kac_6	340.18	307.75			0.76634	0.91653	48.709	5	0	Median	NaN	NaN	NaN	0	0	Median	0.76634	0.91653	18.843	3	0	Plateau	1.0255	0.95923	NaN	1	0	Median	2.1743	2.3438	NaN	1	0	Median	1218400000	682550000	535900000	0	0	0	845460000	459740000	385720000	229290000	168170000	61116000	143700000	54633000	89069000	48745	775	45898	293892;293893;293894;293895;293896;293897	394434;394435;394436;394437;394438;394439;394440	394437	399		6	
SVVLQLADGQIFK	1	Unmodified	1416.7977	0.79766537	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	2	3	88.248	87.583	2;3	8.2242E-07	76057	160511_QHF_FH_JSI12i_3	149.31	130.53			1.0391	0.96852	25.55	9	4	Median	1.0788	0.91763	10.383	2	0	Median	1.0154	1.1531	24.656	3	2	Plateau	0.95459	0.90389	16.749	2	1	Median	1.2032	1.3042	42.087	2	1	Median	354820000	179480000	175340000	36171000	16859000	19312000	100580000	49880000	50704000	74681000	37513000	37168000	143390000	75229000	68159000	48746	648	45899	293898;293899;293900;293901;293902;293903;293904;293905;293906;293907	394441;394442;394443;394444;394445;394446;394447;394448;394449;394450;394451;394452;394453	394451			13	
SVVLYVILAPFDNEQSDLVHR	0	Unmodified	2413.2642	0.2641602	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	96.004	87.928	3	3.0342E-48	49413	160513_QHF_FH_JSI9Kac_6	187.06	178.75			0.86729	1.0286	9.3871	3	0	Plateau	1.0909	0.91437	NaN	1	0	Median	0.86729	1.0286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79749	0.85445	NaN	1	0	Median	735190000	367730000	367460000	179030000	74748000	104290000	396980000	211820000	185160000	0	0	0	159180000	81163000	78018000	48747	110	45900	293908;293909;293910	394454;394455;394456;394457	394454			4	
SVVNMEWDK	1	Unmodified	1106.5066	0.50664508	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	5.01	2	3						1		1	2	2	1	48.79	48.046	2	0.00012117	41449	160511_QHF_FH_JSI11i_2	109.66	88.793			0.9317	1.1069	13.076	5	5	Median	NaN	NaN	NaN	0	0	Median	0.79612	0.96187	19.864	2	2	Median	1.1294	1.1357	1.5406	2	2	Median	0.89459	1.0069	NaN	1	1	Median	2120400000	868140000	1252300000	0	0	0	674370000	338010000	336360000	969700000	354450000	615260000	476340000	175690000	300650000	48748	878	45901	293911;293912;293913;293914;293915;293916	394458;394459;394460;394461;394462;394463	394462			6	
SVVPGGGAVEAALSIYLENYATSMGSR	0	Unmodified	2698.3272	0.32723074	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.15	89.723	3	3.3703E-49	48777	160513_QHF_FH_JSI12Kac_6	172.8	163.42			1.0477	1.1327	15.156	4	0	Median	1.6456	1.3812	NaN	1	0	Median	0.97079	1.169	NaN	1	0	Median	1.1308	1.0975	NaN	1	0	Median	0.91059	0.95865	NaN	1	0	Median	820370000	400380000	419990000	182780000	75414000	107360000	295260000	153990000	141260000	100160000	49150000	51015000	242180000	121830000	120350000	48749	1132	45902	293917;293918;293919;293920	394464;394465;394466;394467	394466			4	
SVVPPNR	0	Acetyl (Protein N-term)	809.43955	0.43955179	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		30.15	22.056	2	0.038853	9553	160513_QHF_FH_JSI11Kac_1	36.556	24.835			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48750	379	45903	293921	394468	394468			1	
SVVSDLEADDVK	1	Unmodified	1275.6194	0.61942623	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	50.787	49.959	2	2.2236E-07	44939	160511_QHF_FH_JSI10i_1	131.83	105.89			0.82145	0.78702	26.901	8	0	Median	0.8163	0.67591	11.309	2	0	Median	0.6318	0.76027	14.703	2	0	Median	0.88639	0.85686	21.836	2	0	Median	1.1353	1.2431	8.0795	2	0	Median	841030000	443400000	397630000	143340000	68886000	74450000	239420000	147110000	92302000	203510000	100940000	102580000	254770000	126460000	128300000	48751	999	45904	293922;293923;293924;293925;293926;293927;293928;293929	394469;394470;394471;394472;394473;394474;394475;394476;394477;394478;394479;394480	394477			12	
SVVSGSINTVLGSR	0	Unmodified	1374.7467	0.74669243	4281	Q99541	PLIN2	Perilipin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			59.324	57.793	2	3.2243E-05	47403	160511_QHF_FH_JSI9i_3	80.69	25.123			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48752	4281	45905	293930;293931;293932	394481;394482;394483	394483			3	
SVVSYWNLALIFHR	0	Unmodified	1703.9148	0.91476081	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	92.098	84.291	2;3	7.2147E-31	46782	160513_QHF_FH_JSI9Kac_6	164.68	140.49			0.96699	0.84771	13.203	5	1	Median	0.98492	0.84771	NaN	1	0	Median	0.67672	0.81077	1.0435	2	1	Median	1.1158	1.0483	NaN	1	0	Median	0.96699	1.0408	NaN	1	0	Median	1189000000	687620000	501380000	232720000	114170000	118550000	662910000	416440000	246470000	145790000	71137000	74649000	147580000	85873000	61712000	48753	1685;31;191	45906	293933;293934;293935;293936;293937	394484;394485;394486;394487;394488;394489;394490	394486			7	
SVVTGGVQSVMGSR	0	Unmodified	1362.6925	0.69254837	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.52	4	4	4				3	4	3	3	6	8	5	50.184	45.54	2	2.0845E-81	39098	160511_QHF_FH_JSI12i_3	250.48	226.45			1.0176	1.0695	34.589	20	6	Median	1.4765	1.2121	13.87	3	1	Plateau	0.87993	1.0313	62.191	6	2	Median	1.0081	0.98016	6.8932	7	3	Median	1.0297	1.0841	15.177	4	0	Median	4596100000	2215700000	2380400000	1071400000	432980000	638410000	1557600000	845570000	711980000	1430200000	669890000	760280000	537010000	267270000	269740000	48754	434	45907	293938;293939;293940;293941;293942;293943;293944;293945;293946;293947;293948;293949;293950;293951;293952;293953;293954;293955;293956;293957;293958;293959	394491;394492;394493;394494;394495;394496;394497;394498;394499;394500;394501;394502;394503;394504;394505;394506;394507;394508;394509;394510;394511;394512;394513;394514;394515;394516;394517;394518;394519;394520;394521	394520			31	
SVVTGGVQSVMGSR	0	Oxidation (M)	1378.6875	0.68746299	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.58	6.12	3		9				4	8		4	8	5	7	32.926	27.253	2	5.5676E-11	15093	160513_QHF_FH_JSI9Kac_5	125.22	120.43			1.0894	1.0736	37.285	20	6	Median	1.3953	1.1367	23.45	4	0	Median	0.92328	1.0736	48.75	8	4	Median	1.0894	1.0495	47.905	4	1	Median	1.1114	1.2155	15.271	4	1	Median	350130000	152400000	197730000	85265000	30080000	55185000	191730000	88013000	103710000	42993000	16123000	26869000	30149000	18184000	11965000	48755	434	45907	293960;293961;293962;293963;293964;293965;293966;293967;293968;293969;293970;293971;293972;293973;293974;293975;293976;293977;293978;293979;293980;293981;293982;293983	394522;394523;394524;394525;394526;394527;394528;394529;394530;394531;394532;394533;394534;394535;394536;394537;394538;394539;394540;394541;394542;394543;394544;394545;394546;394547;394548;394549;394550;394551;394552;394553	394528		168	31	
SVVTPAR	0	Unmodified	728.41809	0.41808807	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	10.337	10.126	2	0.010715	7533	160511_QHF_FH_JSI11i_2	73.637	36.029			0.88545	0.89482	17.146	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72792	0.89431	NaN	1	0	Median	0.88545	0.89482	NaN	1	0	Median	1.1295	1.2039	NaN	1	0	Median	305870000	183550000	122320000	0	0	0	86478000	48994000	37484000	171960000	110270000	61696000	47432000	24293000	23139000	48756	685	45908	293984;293985;293986	394554;394555;394556;394557	394554			4	
SVVTSIFGVK	1	Unmodified	1035.5964	0.59644637	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	5	4	4	73.416	67.665	2	5.9306E-12	60728	160511_QHF_FH_JSI11i_3	154.49	67.535			0.94097	1.0193	11.088	16	1	Median	1.1399	0.9623	10.334	4	0	Median	0.87787	1.0195	6.0717	5	0	Median	1.0054	0.99623	10.586	4	1	Median	0.76029	0.81064	17.181	3	0	Median	6299100000	2992300000	3306800000	1428900000	629060000	799860000	1211600000	630380000	581190000	1551900000	783980000	767940000	2106700000	948920000	1157800000	48757	1520	45909	293987;293988;293989;293990;293991;293992;293993;293994;293995;293996;293997;293998;293999;294000;294001;294002;294003	394558;394559;394560;394561;394562;394563;394564;394565;394566;394567;394568;394569;394570;394571;394572;394573;394574;394575;394576;394577;394578;394579;394580;394581;394582;394583;394584;394585;394586;394587;394588;394589	394559			32	
SVVTTAR	0	Unmodified	732.413	0.41300269	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	9.1201	-0.47651	2	0.050573	3412	160513_QHF_FH_JSI11Kac_5	51.787	8.6637			0.97009	1.0605	14.947	3	0	Median	NaN	NaN	NaN	0	0	Median	0.71709	0.84949	NaN	1	0	Median	1.1504	1.129	NaN	1	0	Median	0.97009	1.0605	NaN	1	0	Median	8259100	4154600	4104500	0	0	0	3621700	2111400	1510400	2915600	1243000	1672700	1721800	800300	921450	48758	3936	45910	294004;294005;294006	394590	394590			1	
SVVTVAVK	1	Unmodified	801.496	0.49600404	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		38.387	28.799	2	0.044589	17582	160513_QHF_FH_JSI11Kac_4	54.157	6.3086			1.9686	1.974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9686	1.974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3716900	1221800	2495200	0	0	0	0	0	0	3716900	1221800	2495200	0	0	0	48759	2584	45911	294007	394591	394591			1	
SVVYIHGGGWALASAK	1	Unmodified	1614.8518	0.85182621	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	2	1	2	1	67.668	59.853	2;3	1.7177E-07	32501	160513_QHF_FH_JSI11Kac_6	109.04	81.822			1.1349	1.2599	34.67	6	2	Median	1.7085	1.4469	63.551	2	1	Median	1.0587	1.2553	NaN	1	0	Median	1.069	1.0556	31.175	2	1	Median	1.1951	1.2645	NaN	1	0	Median	341060000	135860000	205200000	70680000	22382000	48298000	127590000	54624000	72967000	95990000	38899000	57091000	46802000	19954000	26847000	48760	3122	45912	294008;294009;294010;294011;294012;294013	394592;394593;394594;394595;394596;394597;394598;394599;394600	394593			9	
SVVYQETNGETRVEIK	1	Unmodified	1850.9374	0.93740633	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	40.108	39.912	3	0.01986	34014	160511_QHF_FH_JSI12i_3	37.092	26.607			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48761	2543	45913	294014	394601	394601			1	
SVVYQQSSK	1	Unmodified	1024.5189	0.51892433	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.76	3	3				1	2			2	2	2	3	12.441	9.1832	2	0.00095543	8004	160511_QHF_FH_JSI9i_1	82.749	72.763			0.82331	0.83962	23.6	6	2	Median	0.79103	0.65105	26.173	2	2	Median	0.85602	1.0125	11.54	2	0	Median	0.86998	0.84772	NaN	1	0	Median	0.77914	0.83161	NaN	1	0	Median	387300000	220690000	166610000	147660000	77468000	70194000	127940000	81688000	46256000	5716900	2799900	2916900	105980000	58735000	47244000	48762	2567	45914	294015;294016;294017;294018;294019;294020;294021;294022;294023	394602;394603;394604;394605;394606;394607;394608;394609;394610;394611	394610			10	
SVVYYQVK	1	Unmodified	984.52803	0.52803245	4765;3856	Q9H7D0;Q92608	DOCK5;DOCK2	Dedicator of cytokinesis protein 5;Dedicator of cytokinesis protein 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	1	2	42.771	32.752	2	0.019284	18813	160513_QHF_FH_JSI10Kac_4	57.559	33.404			0.86397	0.88835	14.102	5	0	Median	NaN	NaN	NaN	0	0	Median	0.83517	0.98436	14.514	2	0	Median	0.86397	0.8241	NaN	1	0	Median	0.81804	0.88923	18.78	2	0	Median	21261000	10730000	10531000	0	0	0	8198600	3905400	4293200	6910200	3409400	3500800	6152100	3414800	2737300	48763	4765;3856	45915	294024;294025;294026;294027;294028	394612;394613;394614;394615	394612			4	
SVWGSLAVQNSPK	1	Unmodified	1371.7147	0.71466402	1142	P18615	NELFE	Negative elongation factor E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							3	3	1	1	55.95	54.982	2;3	2.1073E-08	48589	160511_QHF_FH_JSI11i_3	141.08	125.45			0.71516	0.70813	16.828	6	3	Median	0.77761	0.61789	14.671	2	2	Median	0.6724	0.80239	16.111	2	1	Median	0.9028	0.83876	NaN	1	0	Median	0.69493	0.70036	NaN	1	0	Median	328350000	184350000	144010000	102230000	57741000	44493000	85425000	51173000	34252000	89091000	41734000	47357000	51601000	33697000	17905000	48764	1142	45916	294029;294030;294031;294032;294033;294034;294035;294036	394616;394617;394618;394619;394620;394621;394622;394623;394624;394625;394626;394627	394617			12	
SVYAHFPINVVIQENGSLVEIR	0	Unmodified	2483.3173	0.3172584	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		3	2						3	1	3	2	2	94.991	91.979	2;3	1.3254E-125	46176	160513_QHF_FH_JSI10Kac_6	257.15	227.42			0.93	0.99476	13.877	7	2	Median	1.3643	1.1726	NaN	1	1	Median	0.93854	1.1159	16.252	2	0	Median	1.0352	1.0342	19.208	2	1	Median	0.91727	0.9258	2.8704	2	0	Median	910560000	469450000	441110000	43748000	17363000	26385000	514670000	279710000	234950000	100860000	40659000	60202000	251290000	131710000	119570000	48765	1398	45917	294037;294038;294039;294040;294041;294042;294043;294044	394628;394629;394630;394631;394632;394633;394634;394635;394636;394637;394638;394639;394640;394641;394642;394643	394643			15	
SVYENDVLEQLK	1	Unmodified	1435.7195	0.71947463	4189	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		66.099	65.498	2	0.00020166	59387	160511_QHF_FH_JSI10i_1	96.171	55.82			3.8016	4.2228	75.613	3	3	Plateau	1.4201	1.2071	NaN	1	1	Median	4.6804	5.4743	NaN	1	1	Median	2.5029	2.4903	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	200850000	43712000	157140000	21704000	7587000	14117000	135930000	19486000	116450000	43218000	16638000	26580000	0	0	0	48766	4189	45918	294045;294046;294047	394644;394645;394646	394644			3	
SVYGGEFIQQLK	1	Unmodified	1367.7085	0.70851601	4921	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	67.175	66.275	2	1.2844E-07	57002	160511_QHF_FH_JSI12i_2	135.86	98.383			0.84894	0.92482	4.6483	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75877	0.92482	NaN	1	0	Median	0.84894	0.85925	NaN	1	0	Median	0.84154	0.93645	NaN	1	0	Median	285270000	139830000	145440000	0	0	0	84291000	50290000	34002000	111570000	39131000	72435000	89413000	50406000	39007000	48767	4921	45919	294048;294049;294050	394647;394648;394649;394650;394651	394647			4	
SVYQLLSENPPDGER	0	Unmodified	1702.8162	0.81622856	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.64	1	5	4							2	3	3	2	63.028	62.442	2	9.3698E-17	54816	160511_QHF_FH_JSI9i_2	124.86	110.44			0.86192	1.0705	25.209	5	4	Median	1.384	1.1726	NaN	1	0	Median	0.80348	0.98713	11.461	2	2	Median	1.6129	1.5397	NaN	1	1	Median	0.73165	0.7964	NaN	1	1	Median	117760000	57880000	59878000	29527000	13695000	15832000	51022000	28771000	22250000	26460000	8233200	18227000	10749000	7181200	3568000	48768	4076	45920	294051;294052;294053;294054;294055;294056;294057;294058;294059;294060	394652;394653;394654;394655;394656;394657;394658;394659;394660;394661;394662;394663	394657			12	
SVYSWDIVVQR	0	Unmodified	1350.6932	0.6932003	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	2	4	3	73.949	69.97	2	1.4473E-46	38064	160513_QHF_FH_JSI10Kac_6	214.83	189.27			1.1309	1.0515	12.431	9	4	Median	1.2351	1.0515	NaN	1	0	Median	0.88894	1.0497	NaN	1	0	Median	1.1606	1.1147	10.582	4	3	Median	1.1309	1.2375	19.236	3	1	Median	1411400000	694670000	716720000	92902000	32813000	60089000	378990000	205920000	173070000	549600000	266900000	282700000	389900000	189040000	200870000	48769	282	45921	294061;294062;294063;294064;294065;294066;294067;294068;294069;294070;294071	394664;394665;394666;394667;394668;394669;394670;394671;394672;394673;394674;394675	394675			11	
SVYVGEETNITLNDLKPAMDYHAK	2	Unmodified	2707.3163	0.3163317	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.87	75.586	4	7.0971E-05	65634	160511_QHF_FH_JSI12i_3	51.645	48.603			1.216	1.2289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.216	1.2289	NaN	1	0	Median	29177000	13847000	15331000	0	0	0	0	0	0	0	0	0	29177000	13847000	15331000	48770	5520	45922	294072	394676	394676			1	
SVYWENTLHTLK	1	Unmodified	1489.7565	0.75652884	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	3	1	58.869	58.445	2;3	1.1579E-14	51654	160511_QHF_FH_JSI11i_3	140.3	122.86			1.2623	1.203	16.84	5	2	Median	1.6747	1.4436	NaN	1	0	Median	1.2899	1.5971	NaN	1	0	Median	1.1889	1.1154	9.0945	2	1	Median	1.2053	1.203	NaN	1	1	Median	599320000	272110000	327210000	44972000	19916000	25056000	112330000	51753000	60577000	380440000	172990000	207460000	61573000	27460000	34113000	48771	1895	45923	294073;294074;294075;294076;294077;294078	394677;394678;394679;394680;394681	394679			4	
SWASLFHDSKPSSSSPVAYVETK	2	Unmodified	2509.2125	0.21251856	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		71.734	71.734	3	4.4976E-09	64005	160511_QHF_FH_JSI11i_3	104.63	86.883			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12624000	12624000	0	0	0	0	0	0	0	12624000	12624000	0	0	0	0	48772	2567	45924	294079	394682	394682			1	
SWDAINR	0	Unmodified	860.41407	0.41406533	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0	By MS/MS		By matching		2	0		2								1		1		28.008	27.309	2	0.018198	23593	160511_QHF_FH_JSI9i_2	60.294	33.498			1.1426	1.0403	15.122	2	0	Median	1.372	1.1577	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95152	0.93476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95448000	45587000	49861000	39866000	16935000	22931000	0	0	0	55581000	28652000	26929000	0	0	0	48773	1548	45925	294080;294081	394683	394683			1	
SWDIFFR	0	Unmodified	969.47085	0.47085192	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.84		4	5						3	4	2	3	3	85.498	82.674	2	3.9411E-17	40072	160513_QHF_FH_JSI12Kac_6	168.38	111.87			1.1394	1.0636	16.04	12	1	Median	1.2847	1.0823	18.483	4	1	Median	0.87359	1.0241	12.693	2	0	Median	1.1425	1.0965	14.561	3	0	Median	0.97022	1.0317	23.31	3	0	Median	670830000	323300000	347530000	127360000	57011000	70351000	67373000	35750000	31623000	216950000	97316000	119640000	259140000	133230000	125910000	48774	2185	45926	294082;294083;294084;294085;294086;294087;294088;294089;294090;294091;294092;294093	394684;394685;394686;394687;394688;394689;394690;394691;394692;394693;394694;394695;394696;394697;394698;394699;394700;394701;394702;394703	394702			20	
SWDVETATELLLSN	0	Unmodified	1576.7621	0.76206772	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				102.33	102.15	2	9.2747E-06	90357	160511_QHF_FH_JSI9i_1	135.55	116.8			1.83	1.4708	NaN	1	1	Median	1.83	1.4708	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59908000	19429000	40478000	59908000	19429000	40478000	0	0	0	0	0	0	0	0	0	48775	1936	45927	294094	394704	394704			1	
SWEEQMIEVGRK	1	Unmodified	1490.7188	0.71876312	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8								2	5	4	52.633	52.363	2;3	1.1532E-07	44776	160511_QHF_FH_JSI12i_3	115.18	94.969			0.98768	0.96101	53.895	8	4	Median	NaN	NaN	NaN	0	0	Median	1.1995	1.4408	NaN	1	0	Median	1.0203	0.96924	74.282	4	2	Median	0.84707	0.84872	20.322	3	2	Median	1397300000	766390000	630940000	0	0	0	147820000	83202000	64620000	951530000	548460000	403070000	297980000	134730000	163250000	48776	2144	45928	294095;294096;294097;294098;294099;294100;294101;294102;294103;294104;294105	394705;394706;394707;394708;394709;394710;394711;394712;394713;394714;394715	394715			11	
SWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASK	1	2 Oxidation (M)	4460.0981	0.09808901	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	2	0	By MS/MS				16	0									1	1				100.65	91.473	4	6.1575E-69	52874	160513_QHF_FH_JSI9Kac_6	163.4	159.48			1.2802	1.1037	NaN	1	0	Median	1.2802	1.1037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52266000	23436000	28830000	52266000	23436000	28830000	0	0	0	0	0	0	0	0	0	48777	1667	45929	294106	394716	394716		1355;1356	1	
SWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASK	1	Oxidation (M)	4444.1032	0.10317439	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			103.49	97.77	4	1.7199E-98	57883	160513_QHF_FH_JSI10Kac_6	190.77	186.85			0.99709	1.1955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99709	1.1955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153820000	80572000	73245000	0	0	0	153820000	80572000	73245000	0	0	0	0	0	0	48778	1667	45929	294107	394717	394717		1355;1356	1	
SWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASK	1	Unmodified	4428.1083	0.10825977	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.85	99.126	4;5	3.0726E-161	58654	160513_QHF_FH_JSI10Kac_6	249.63	241.63			0.79851	0.95167	16.906	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79851	0.95167	16.906	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2450900000	1343600000	1107300000	0	0	0	2450900000	1343600000	1107300000	0	0	0	0	0	0	48779	1667	45929	294108;294109	394718;394719;394720;394721	394718			4	
SWFEGQGLAGK	1	Unmodified	1178.572	0.57202253	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	52.83	52.578	2	7.5257E-07	45527	160511_QHF_FH_JSI11i_2	113.22	71.11			0.99508	0.94439	18.082	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.037	1.0222	11.202	2	1	Median	0.76177	0.77139	NaN	1	1	Median	720790000	333380000	387420000	0	0	0	0	0	0	392360000	167130000	225230000	328440000	166250000	162190000	48780	4704	45930	294110;294111;294112;294113;294114	394722;394723;394724;394725;394726;394727	394726			6	
SWGGYVLYPQVMEFWQGQTNR	0	Unmodified	2545.1849	0.18486402	5048	Q9NVS9	PNPO	Pyridoxine-5'-phosphate oxidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.621	89.9	2	2.4465E-103	51897	160513_QHF_FH_JSI10Kac_6	283.34	248.3			1.0453	1.2207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0453	1.2207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87434000	50943000	36491000	0	0	0	87434000	50943000	36491000	0	0	0	0	0	0	48781	5048	45931	294115	394728	394728			1	
SWGSFTVLDNSAWYQK	1	Unmodified	1887.8792	0.87916317	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.3	5.37		3	5						2		3	3	4	93.147	92.195	2;3	9.2227E-118	81276	160511_QHF_FH_JSI12i_3	281.25	234.89			1.042	1.1802	47.655	7	3	Median	NaN	NaN	NaN	0	0	Median	0.59426	0.69437	80.668	2	2	Median	1.1565	1.0751	29.373	2	1	Median	1.2167	1.1802	31.589	3	0	Median	194490000	106970000	87516000	0	0	0	75729000	50928000	24801000	43096000	21163000	21932000	75666000	34884000	40783000	48782	5549	45932	294116;294117;294118;294119;294120;294121;294122;294123;294124;294125	394729;394730;394731;394732;394733;394734;394735;394736;394737;394738;394739;394740	394738			12	
SWHDIEK	1	Unmodified	913.42938	0.42938104	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	17.002	17.041	2;3	0.044649	13823	160511_QHF_FH_JSI12i_3	45.081	33.176			0.81658	0.83219	2.5631	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81658	0.83219	2.5631	2	1	Median	230590000	122600000	107980000	0	0	0	0	0	0	0	0	0	230590000	122600000	107980000	48783	2675	45933	294126;294127	394741;394742	394741			2	
SWHDMQTTTAYK	1	Unmodified	1467.6453	0.64526383	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0				By MS/MS	3	0			4										4	30.133	30.068	2;3	8.5675E-08	25354	160511_QHF_FH_JSI12i_3	114.83	96.97			1.4915	1.4859	23.828	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4915	1.4859	23.828	3	3	Median	204220000	92975000	111240000	0	0	0	0	0	0	0	0	0	204220000	92975000	111240000	48784	2779	45934	294128;294129;294130;294131	394743;394744;394745;394746	394746			4	
SWHDMQTTTAYKK	2	Unmodified	1595.7402	0.74022685	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			28.617	27.292	3	0.045482	22580	160511_QHF_FH_JSI10i_3	27.862	20.491			1.6955	1.9714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6955	1.9714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10455000	5932500	4522500	0	0	0	10455000	5932500	4522500	0	0	0	0	0	0	48785	2779	45935	294132	394747	394747			1	
SWHDVQVSSAYVK	1	Unmodified	1504.731	0.73104237	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		8	8						8	5	5	7	7	48.642	44.645	2;3	2.9068E-09	39482	160511_QHF_FH_JSI11i_3	104.32	77.81			1.153	1.1304	35.302	18	7	Median	1.0983	0.95376	35.012	4	0	Median	1.0666	1.252	21.722	4	2	Median	1.5529	1.5054	31.491	5	2	Linear	1.4446	1.534	40.511	5	3	Median	1516600000	679160000	837400000	206320000	94702000	111620000	322690000	178220000	144470000	337120000	161330000	175800000	650420000	244910000	405510000	48786	329	45936	294133;294134;294135;294136;294137;294138;294139;294140;294141;294142;294143;294144;294145;294146;294147;294148;294149;294150;294151;294152;294153;294154;294155;294156	394748;394749;394750;394751;394752;394753;394754;394755;394756;394757;394758;394759;394760;394761;394762;394763;394764;394765;394766;394767;394768;394769;394770;394771;394772;394773;394774;394775;394776;394777;394778;394779;394780	394751			33	
SWIEEQAMGSFLSVAK	1	Unmodified	1781.8658	0.86582129	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.84		9	2						1	2	4	2	4	99.539	98.975	2;3	3.9733E-30	86420	160511_QHF_FH_JSI12i_2	191.06	165.12			1.0196	1.1328	34.498	12	6	Median	1.1435	0.98171	48.302	2	1	Median	1.0524	1.2826	27.161	4	3	Median	1.0008	1.0205	15.985	2	0	Median	0.86202	0.93509	49.449	4	2	Median	320300000	168890000	151410000	41355000	19444000	21912000	120650000	58838000	61814000	65533000	36786000	28747000	92762000	53826000	38936000	48787	1313	45937	294157;294158;294159;294160;294161;294162;294163;294164;294165;294166;294167;294168	394781;394782;394783;394784;394785;394786;394787;394788;394789;394790;394791;394792;394793;394794;394795;394796;394797	394782			17	
SWLFGINK	1	Acetyl (Protein N-term)	1005.5284	0.5283668	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	1	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		101.33	101.23	2	0.00032106	91940	160511_QHF_FH_JSI10i_1	59.205	45.202			1.4442	1.1671	18.62	3	0	Median	1.4442	1.1671	NaN	1	0	Median	0.84609	0.99323	NaN	1	0	Median	1.496	1.4398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144490000	59789000	84705000	49390000	14574000	34816000	47118000	22745000	24372000	47987000	22470000	25517000	0	0	0	48788	5035	45938	294169;294170;294171	394798;394799;394800	394799			3	
SWLFGVNK	1	Acetyl (Protein N-term)	991.51272	0.51271674	2957	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	94.839	94.625	2	0.00095681	85794	160511_QHF_FH_JSI10i_1	74.415	63.047			0.07739	0.07978	156.02	3	2	Median	NaN	NaN	NaN	0	0	Median	0.061811	0.064889	NaN	1	1	Median	1.1082	1.0668	NaN	1	0	Median	0.07739	0.07978	NaN	1	1	Median	16362000	12507000	3855500	0	0	0	5185900	4899400	286520	7371200	4196600	3174700	3805000	3410700	394290	48789	2957	45939	294172;294173;294174;294175;294176	394801;394802;394803;394804;394805;394806	394806			6	
SWLGYAQGYLLYR	0	Unmodified	1588.8038	0.80381338	545	O75592	MYCBP2	E3 ubiquitin-protein ligase MYCBP2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.23	80.528	2	4.5599E-41	45223	160513_QHF_FH_JSI10Kac_6	212.82	188.02			0.73427	0.86385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73427	0.86385	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119020000	74370000	44654000	0	0	0	119020000	74370000	44654000	0	0	0	0	0	0	48790	545	45940	294177	394807;394808	394808			2	
SWLHNDLK	1	Unmodified	1011.5138	0.51377937	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	29.488	29.014	2;3	0.00025566	23988	160511_QHF_FH_JSI12i_3	109.11	64.715			0.99809	0.97336	37.153	8	1	Median	1.2906	1.1316	NaN	1	0	Median	1.2086	1.4484	57.104	2	0	Median	1.0395	0.68102	22.773	3	1	Plateau	1.0078	0.99581	9.3606	2	0	Median	788670000	378270000	410410000	17732000	7208900	10523000	76934000	35226000	41708000	224630000	104030000	120600000	469380000	231800000	237580000	48791	1306	45941	294178;294179;294180;294181;294182;294183;294184;294185	394809;394810;394811;394812;394813;394814;394815;394816	394816			8	
SWLLPVIR	0	Unmodified	982.59639	0.59638679	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	87.006	86.37	2	0.00027537	74832	160511_QHF_FH_JSI12i_3	114.19	93.904			0.84861	0.89291	10.881	8	0	Median	1.194	0.99608	4.1947	2	0	Median	0.74583	0.86939	9.5716	2	0	Median	0.92665	0.89891	7.6097	2	0	Median	0.76897	0.79202	11.161	2	0	Median	336020000	171230000	164790000	66068000	29381000	36686000	70035000	37150000	32886000	91403000	46958000	44445000	108510000	57741000	50771000	48792	2904	45942	294186;294187;294188;294189;294190;294191;294192;294193	394817;394818;394819;394820;394821;394822;394823;394824;394825;394826;394827	394827			11	
SWLPQNCTLVDMK	1	Unmodified	1590.7534	0.75343407	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	74.938	74.187	2	3.8855E-05	67730	160511_QHF_FH_JSI12i_1	79.974	65.283			0.87227	0.76045	43.104	5	3	Median	0.87227	0.76045	NaN	1	1	Median	0.89634	1.0953	NaN	1	1	Median	0.57276	0.5654	41.15	2	1	Median	1.1767	1.2952	NaN	1	0	Median	631210000	366200000	265020000	57025000	34692000	22333000	137120000	74831000	62289000	308890000	198550000	110330000	128180000	58121000	70061000	48793	1206	45943	294194;294195;294196;294197;294198;294199;294200	394828;394829;394830;394831;394832;394833;394834;394835	394832			8	
SWLQQSYQAVK	1	Unmodified	1336.6776	0.67755023	5061	Q9NW68	BSDC1	BSD domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.665	49.716	2	0.0011921	43897	160511_QHF_FH_JSI10i_2	70.1	54.949			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48794	5061	45944	294201	394836	394836			1	
SWLSDISK	1	Unmodified	934.476	0.47599688	3536	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		5								1	1	1	2	53.923	52.958	2	0.0027947	45404	160511_QHF_FH_JSI12i_2	84.743	28.732			1.0843	1.0259	14.162	4	1	Median	1.1908	1.0217	NaN	1	0	Median	0.75951	0.91154	NaN	1	0	Median	1.05	1.0302	NaN	1	0	Median	1.1196	1.2795	NaN	1	1	Median	203420000	104850000	98579000	34272000	15559000	18713000	50641000	28648000	21993000	64973000	34328000	30645000	53539000	26311000	27228000	48795	3536	45945	294202;294203;294204;294205;294206	394837;394838;394839;394840;394841	394837			5	
SWLSYSYQSR	0	Unmodified	1275.5884	0.58840088	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	2	3	1	1	56.563	50.666	2	8.3609E-07	26839	160513_QHF_FH_JSI9Kac_6	129.38	100.66			1.1099	1.1254	17.027	7	1	Median	1.2367	1.0335	19.983	2	0	Median	0.93741	1.1254	22.718	3	1	Median	1.2621	1.2528	NaN	1	0	Median	1.0314	1.0941	NaN	1	0	Median	718370000	346860000	371500000	196870000	84108000	112760000	429590000	217790000	211800000	37898000	14965000	22933000	54007000	30000000	24007000	48796	2665	45946	294207;294208;294209;294210;294211;294212;294213	394842;394843;394844;394845;394846;394847;394848;394849;394850;394851;394852;394853;394854	394850			13	
SWMGYELPFDR	0	Unmodified	1399.6231	0.62307182	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	88.288	87.609	2	0.0027996	77070	160511_QHF_FH_JSI11i_2	82.417	53.33			0.78114	0.80849	13.643	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82106	1.0031	NaN	1	0	Median	0.78114	0.77916	NaN	1	0	Median	0.74842	0.80849	NaN	1	0	Median	56148000	27673000	28476000	0	0	0	14656000	6158400	8497200	28870000	14967000	13903000	12622000	6547000	6075100	48797	1810	45947	294214;294215;294216	394855;394856	394856			0	
SWNETLTSR	0	Unmodified	1092.52	0.51998696	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.7	6.51		4	1					4	1	3	2	2	3	37.391	32.097	2	3.8515E-05	27976	160511_QHF_FH_JSI9i_2	99.139	72.177			1.0358	1.0291	11.473	10	0	Median	1.4742	1.2564	11.774	3	0	Plateau	0.84838	1.023	1.2274	2	0	Median	0.95555	0.95731	9.8303	2	0	Median	1.1536	1.2412	12.896	3	0	Plateau	2160200000	1106600000	1053600000	385370000	179530000	205840000	488400000	265960000	222440000	490940000	269780000	221170000	795510000	391330000	404180000	48798	589	45948	294217;294218;294219;294220;294221;294222;294223;294224;294225;294226	394857;394858;394859;394860;394861;394862;394863;394864;394865;394866;394867;394868	394860			12	
SWNTEAGVPLATLCSNLYHR	0	Unmodified	2288.1008	0.10080004	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			85.159	83.951	3	0.00080426	70280	160511_QHF_FH_JSI10i_3	36.679	23.738			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48799	2279	45949	294227	394869	394869			1	
SWPAAIPHLR	0	Unmodified	1146.6298	0.62981218	5612	Q9Y483	MTF2	Metal-response element-binding transcription factor 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				59.809	58.274	3	0.00071347	47861	160511_QHF_FH_JSI9i_3	54.539	41.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48800	5612	45950	294228	394870	394870			1	
SWPEGHFATITLTFIDK	1	Unmodified	1961.9887	0.98871362	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.38		1	3						7	3	2	3	3	91.538	85.848	2;3	3.2933E-96	44320	160513_QHF_FH_JSI11Kac_6	276.51	239.33			0.87639	0.89668	15.017	10	5	Median	1.2595	1.0809	28.565	3	3	Plateau	0.74461	0.89609	11.624	2	0	Median	0.93049	0.87668	10.803	3	1	Median	0.85724	0.88477	5.0794	2	1	Median	1734500000	918870000	815580000	176650000	73924000	102730000	782110000	437180000	344930000	339910000	190820000	149090000	435780000	216950000	218830000	48801	694	45951	294229;294230;294231;294232;294233;294234;294235;294236;294237;294238;294239	394871;394872;394873;394874;394875;394876;394877;394878;394879;394880;394881;394882;394883;394884;394885;394886;394887	394875			17	
SWPEPDQKPEPVDK	2	Unmodified	1650.789	0.78895118	4238	Q96S82	UBL7	Ubiquitin-like protein 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.199	36.791	3	0.0044721	33126	160511_QHF_FH_JSI11i_1	48.112	36.135			0.72435	0.75525	8.9127	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.64038	0.75525	NaN	1	0	Median	0.81934	0.78373	NaN	1	0	Median	0.87762	0.89477	NaN	1	0	Median	113220000	62407000	50816000	0	0	0	46219000	27618000	18601000	40120000	20691000	19430000	26884000	14098000	12786000	48802	4238	45952	294240;294241;294242	394888;394889;394890	394888			3	
SWQDELAQQAEEGSAR	0	Unmodified	1803.8024	0.80236941	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								3	4	3	3	56.496	55.766	2;3	1.6172E-35	49579	160511_QHF_FH_JSI9i_1	164.81	151.61			1.0122	1.0401	15.804	12	3	Median	1.3716	1.155	10.029	2	0	Median	0.79222	0.95	21.131	4	2	Median	1.1256	1.1044	11.612	3	1	Median	1.0101	1.0416	1.3422	3	0	Plateau	1045700000	500670000	544990000	191230000	80140000	111090000	246920000	136460000	110470000	363600000	158760000	204840000	243900000	125310000	118590000	48803	3323	45953	294243;294244;294245;294246;294247;294248;294249;294250;294251;294252;294253;294254;294255	394891;394892;394893;394894;394895;394896;394897;394898;394899;394900;394901;394902;394903;394904;394905;394906;394907;394908;394909	394904			17	
SWQDNIQTVLFTLVQAMGQVR	0	Unmodified	2433.2475	0.24746427	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.13	97.413	3	2.893E-37	57654	160513_QHF_FH_JSI10Kac_6	166.06	153.4			0.91742	1.0861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91742	1.0861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78516000	36891000	41625000	0	0	0	78516000	36891000	41625000	0	0	0	0	0	0	48804	4205	45954	294256	394910	394910			1	
SWQGVTIYFSGHETPGEGEHK	1	Unmodified	2345.0713	0.071274048	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.4	62.583	4	1.2609E-13	32834	160513_QHF_FH_JSI12Kac_6	114.84	111.4			0.87262	1.0986	19.208	4	0	Linear	1.0332	0.88275	NaN	1	0	Median	0.95443	1.1496	NaN	1	0	Median	1.443	1.4002	NaN	1	0	Median	0.9835	1.0498	NaN	1	0	Median	141280000	61285000	79994000	20872000	8693900	12178000	64065000	27275000	36790000	14506000	6740900	7765000	41837000	18576000	23262000	48805	3482	45955	294257;294258;294259;294260	394911;394912;394913	394912			2	
SWSEESLKPSDNEQGLPVFSGSPPMK	2	Unmodified	2832.3276	0.32762467	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.536	78.536	3	0.00092425	70157	160511_QHF_FH_JSI11i_3	41.763	35.733			0.96825	0.91437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96825	0.91437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11827000	4223800	7603200	0	0	0	0	0	0	11827000	4223800	7603200	0	0	0	48806	3164	45956	294261	394914	394914			1	
SWSHYTVPAGMTVIQWVSDFSER	0	Unmodified	2682.2537	0.25367186	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.893	87.486	3	4.2788E-61	51681	160513_QHF_FH_JSI10Kac_6	201.27	188.08			0.96584	1.1933	9.3348	4	0	Linear	1.3217	1.1506	NaN	1	0	Median	1.0346	1.2376	NaN	1	0	Median	1.4706	1.3952	NaN	1	0	Median	1.0744	1.1399	NaN	1	0	Median	1407900000	686020000	721860000	292840000	123440000	169400000	544190000	295360000	248820000	230800000	95927000	134870000	340050000	171280000	168770000	48807	2517	45957	294262;294263;294264;294265	394915;394916;394917;394918;394919	394919			5	
SWSLATFR	0	Unmodified	966.49232	0.49231565	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	12.8	5.63			1						3	2	1		1	69.421	62.583	2	0.0023088	34316	160513_QHF_FH_JSI10Kac_6	91.064	64.892			0.85265	0.84064	26.365	4	0	Median	0.81981	0.69153	7.0755	2	0	Median	0.82462	0.97203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0751	1.1676	NaN	1	0	Median	68544000	37151000	31393000	41164000	21491000	19672000	23515000	13858000	9656800	0	0	0	3866000	1801800	2064300	48808	2636	45958	294266;294267;294268;294269	394920;394921;394922	394921			3	
SWTAADMAAQTTK	1	Unmodified	1380.6344	0.63436479	788;967	P10316;P01892;P01891	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	5.17	6	5					3			2	6	3	3	46.039	43.168	2;3	1.0198E-52	38367	160511_QHF_FH_JSI9i_1	214.26	181.85			0.89039	0.95436	17.593	14	8	Median	1.1638	0.96218	31.845	2	1	Median	0.68799	0.83823	21.022	6	6	Median	0.88036	0.86715	9.2673	3	0	Plateau	0.94422	0.98002	8.0102	3	1	Median	3186300000	1789000000	1397300000	402260000	215020000	187240000	1381200000	815570000	565610000	751950000	399250000	352700000	650900000	359180000	291720000	48809	967;788	45959	294270;294271;294272;294273;294274;294275;294276;294277;294278;294279;294280;294281;294282;294283	394923;394924;394925;394926;394927;394928;394929;394930;394931;394932;394933;394934;394935;394936;394937;394938;394939;394940;394941;394942;394943;394944	394937			22	
SWTAADMAAQTTK	1	Oxidation (M)	1396.6293	0.62927941	788;967	P10316;P01892;P01891	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	4.25	5.63	3						1			1		2	1	35.704	32.016	2	6.1973E-07	23454	160511_QHF_FH_JSI11i_1	98.353	58.309			1.5491	1.5673	46.104	3	2	Median	1.4234	1.1504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5491	1.5673	NaN	1	0	Median	2.7939	2.8491	NaN	1	1	Median	51550000	17737000	33813000	20548000	8126400	12422000	0	0	0	2151700	787520	1364200	28850000	8822600	20027000	48810	967;788	45959	294284;294285;294286;294287	394945;394946;394947;394948;394949	394945		301	5	
SWTAADMAAQTTKHK	2	Acetyl (K)	1687.7988	0.79880436	788;967	P10316;P01892;P01891	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain	no	no	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		53.452	43.121	3	0.00026611	23336	160513_QHF_FH_JSI11Kac_6	111.83	97.822			0.52029	0.55401	152.39	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4378	1.6274	NaN	1	0	Median	0.18827	0.1886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16681000	14114000	2566500	0	0	0	2070900	1021800	1049100	14610000	13093000	1517400	0	0	0	48811	967;788	45960	294288;294289;294290	394950;394951;394952	394950	411		3	
SWTAADTAAQITQR	0	Unmodified	1518.7427	0.74266969	1354;2788;1353	P30480;P30460;P01889;Q04826;P30508;P30510;Q07000;P30505;P30504;P30501;Q29963;P10321;Q29865;P30499	HLA-B;HLA-C	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;HLA class I histocompatibility antigen, Cw-1 alpha chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	3.95	8	7	4					2		5	4	6	6	52.291	51.014	2;3	7.996E-66	44730	160511_QHF_FH_JSI9i_2	234.92	184.05			0.67014	0.66649	24.426	17	5	Linear	1.073	0.89574	45.293	4	0	Median	0.66673	0.77284	8.2813	3	0	Plateau	1.0696	1.0296	6.0258	5	2	Median	0.82202	1.1589	15.645	5	3	Linear	1811800000	930780000	881040000	356520000	180260000	176260000	486180000	270830000	215350000	535120000	258920000	276210000	434000000	220770000	213230000	48812	1353;1354;2788	45961	294291;294292;294293;294294;294295;294296;294297;294298;294299;294300;294301;294302;294303;294304;294305;294306;294307;294308;294309;294310;294311	394953;394954;394955;394956;394957;394958;394959;394960;394961;394962;394963;394964;394965;394966;394967;394968;394969;394970;394971;394972;394973;394974;394975	394966			23	
SWVFTYAQR	0	Unmodified	1156.5665	0.56654322	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			68.223	59.988	2	7.9727E-11	32956	160513_QHF_FH_JSI10Kac_6	168.23	144.08			1.0648	1.0713	13.229	2	0	Median	1.3817	1.1764	NaN	1	0	Median	0.82066	0.97563	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	268770000	142420000	126350000	61293000	27549000	33744000	207480000	114870000	92605000	0	0	0	0	0	0	48813	3795	45962	294312;294313	394976;394977	394976			2	
SWVIDQK	1	Unmodified	874.45487	0.45486751	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.707	1	2	1							2	1	1		37.029	36.113	2	0.0039978	31523	160511_QHF_FH_JSI9i_2	87.323	52.498			0.19012	0.18719	12.088	2	2	Median	0.21426	0.17186	NaN	1	1	Median	0.16869	0.2039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	347320000	296600000	50722000	58198000	45374000	12825000	289120000	251230000	37897000	0	0	0	0	0	0	48814	4992	45963	294314;294315;294316;294317	394978;394979;394980;394981	394980			4	
SWVLVDHQYNIYLYR	0	Unmodified	1967.9894	0.98938232	3665	Q8NG68	TTL	Tubulin--tyrosine ligase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	81.63	74.143	2;3	6.3246E-160	41459	160513_QHF_FH_JSI10Kac_6	337.99	283.79			0.9591	1.0995	19.947	4	0	Median	NaN	NaN	NaN	0	0	Median	0.9256	1.0995	11.728	2	0	Median	0.92172	0.92613	NaN	1	0	Median	1.3569	1.4568	NaN	1	0	Median	780850000	387600000	393250000	0	0	0	654830000	331420000	323410000	35918000	18787000	17132000	90107000	37400000	52707000	48815	3665	45964	294318;294319;294320;294321	394982;394983;394984;394985;394986	394985			5	
SWVNQMESQTGEASK	1	Unmodified	1680.7413	0.74134906	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.61	4	4	3				1	1		2	4	4	3	42.693	41.138	2	1.0744E-51	35027	160511_QHF_FH_JSI12i_3	214.81	195.57			0.9594	0.96469	8.4525	11	1	Median	1.087	0.90554	5.2354	2	1	Median	0.84222	0.99562	11.305	3	0	Plateau	0.98259	0.98577	5.5113	3	0	Plateau	0.84731	0.91037	8.0155	3	0	Median	1983100000	1044200000	938850000	300820000	146880000	153940000	492120000	271910000	220210000	704430000	376500000	327930000	485690000	248920000	236770000	48816	1600	45965	294322;294323;294324;294325;294326;294327;294328;294329;294330;294331;294332;294333;294334	394987;394988;394989;394990;394991;394992;394993;394994;394995;394996;394997;394998;394999;395000;395001;395002;395003;395004;395005;395006;395007;395008;395009;395010	395010			24	
SWVNQMESQTGEASK	1	Oxidation (M)	1696.7363	0.73626368	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	22.949	22.434	2	0.0001065	19761	160511_QHF_FH_JSI12i_1	79.82	63.188			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48817	1600	45965	294335	395011	395011		1279	1	
SWVNQMESQTGEASKLPYDVTPEQALAHEEVK	2	Oxidation (M)	3616.6992	0.69915648	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		71.717	71.717	4	1.0811E-06	64038	160511_QHF_FH_JSI11i_3	48.305	46.356			1.139	1.0906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.139	1.0906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42359000	20093000	22266000	0	0	0	0	0	0	42359000	20093000	22266000	0	0	0	48818	1600	45966	294336	395012;395013;395014	395014		1279	3	
SWVNQMESQTGEASKLPYDVTPEQALAHEEVK	2	Unmodified	3600.7042	0.70424185	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	81.731	81.241	3;4	9.3583E-33	71623	160511_QHF_FH_JSI9i_2	134.91	130.01			1.1726	1.1219	21.022	7	0	Median	1.3046	1.1124	NaN	1	0	Median	1.2395	1.4693	35.298	2	0	Median	1.022	0.98129	7.9378	3	0	Plateau	1.1816	1.2127	NaN	1	0	Median	757320000	373140000	384170000	148510000	61582000	86925000	189600000	87452000	102150000	353440000	187920000	165520000	65776000	36188000	29588000	48819	1600	45966	294337;294338;294339;294340;294341;294342;294343	395015;395016;395017;395018;395019;395020;395021;395022;395023;395024;395025;395026;395027;395028;395029;395030;395031;395032	395022			18	
SWVQCGISMK	1	Unmodified	1194.5525	0.55254942	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	2	1	49.532	48.93	2	4.9221E-06	41838	160511_QHF_FH_JSI12i_3	109.29	87.142			1.4799	1.6708	32.044	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4799	1.716	NaN	1	0	Median	1.0325	0.97248	NaN	1	0	Median	1.6223	1.6708	NaN	1	0	Median	231510000	88157000	143350000	0	0	0	12863000	4369900	8493600	105830000	44960000	60874000	112810000	38827000	73981000	48820	3216	45967	294344;294345;294346;294347	395033;395034;395035;395036	395036			3	
SWVQFNSNSQLMYGLPDSSHVGK	1	Unmodified	2580.2067	0.20672167	2491	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	83.215	82.554	3	3.3798E-30	71626	160511_QHF_FH_JSI12i_3	169.9	162.19			1.1695	1.0699	19.254	5	1	Median	1.1695	1.0186	NaN	1	0	Median	1.0998	1.2903	26.49	2	1	Median	1.2429	1.1816	NaN	1	0	Median	0.81673	0.94927	NaN	1	0	Median	273840000	132640000	141200000	41917000	18916000	23001000	32610000	16661000	15949000	126380000	55152000	71226000	72940000	41911000	31029000	48821	2491	45968	294348;294349;294350;294351;294352;294353	395037;395038;395039;395040;395041;395042;395043;395044;395045;395046;395047;395048;395049	395049			13	
SWWDAVCTLIHR	0	Unmodified	1542.7402	0.74016727	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0		By MS/MS			16	0									1		1			88.456	82.737	3	1.0871E-13	46817	160513_QHF_FH_JSI10Kac_6	111.79	100.85			0.73799	0.84698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73799	0.84698	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60070000	38548000	21522000	0	0	0	60070000	38548000	21522000	0	0	0	0	0	0	48822	1685;31;191	45969	294354	395050;395051	395051			2	
SYAEELAKHGMK	2	Acetyl (K)	1404.6708	0.6707503	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.837	38.148	2	0.0015671	20789	160513_QHF_FH_JSI11Kac_6	96.342	81.198			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48823	2854	45970	294355	395052	395052	2697		1	
SYAKFSATPR	1	Acetyl (K)	1168.5877	0.58767259	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	15	0.632							1	3	1		1	3	1	46.026	35.904	2	0.0040955	18886	160513_QHF_FH_JSI12Kac_5	72.643	56.44			0.3703	0.36408	55.411	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0137	1.2067	NaN	1	0	Median	0.36649	0.34054	3.7023	3	0	Plateau	0.61009	0.68282	NaN	1	0	Median	32514000	22811000	9702600	0	0	0	3856800	1971300	1885500	24371000	18147000	6224300	4285900	2693100	1592800	48824	1449	45971	294356;294357;294358;294359;294360	395053;395054;395055;395056	395056	1431		4	
SYAVSSSVLHGIEPR	0	Unmodified	1600.8209	0.82092001	487	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.876	55.628	3	0.015103	47782	160511_QHF_FH_JSI12i_3	32.044	26.615			1.5198	1.5184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5198	1.5184	NaN	1	1	Median	42682000	12069000	30613000	0	0	0	0	0	0	0	0	0	42682000	12069000	30613000	48825	487	45972	294361	395057	395057			1	
SYAYLLLHAWPAAFHAR	0	Unmodified	1986.0264	0.026436528	4754	Q9H6U8	ALG9	Alpha-1,2-mannosyltransferase ALG9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		85.269	77.567	3;4	4.2817E-24	43774	160513_QHF_FH_JSI10Kac_6	149.3	139.89			0.77045	0.92137	35.85	5	1	Median	1.7913	1.5006	NaN	1	0	Median	0.69131	0.81864	16.719	2	0	Median	1.012	0.92906	48.423	2	1	Median	NaN	NaN	NaN	0	0	Median	1129700000	614390000	515340000	193610000	68407000	125200000	819420000	471700000	347720000	116710000	74286000	42424000	0	0	0	48826	4754	45973	294362;294363;294364;294365;294366	395058;395059;395060;395061;395062;395063	395063			6	
SYCAEIAHNVSSK	1	Unmodified	1464.6667	0.66672755	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.42	2	8	9					6	6	7	7	8	9	30.882	26.807	2;3	1.9428E-30	22329	160511_QHF_FH_JSI12i_3	210.91	196.25			1.148	1.0584	27.474	28	1	Median	1.2284	1.0239	19.025	6	0	Median	1.0597	1.2704	12.866	6	0	Median	0.86102	0.84179	10.709	8	0	Median	1.2881	1.3878	33.974	8	1	Median	4128400000	2064100000	2064200000	366090000	163280000	202810000	900210000	484310000	415900000	1606400000	800060000	806370000	1255600000	616480000	639150000	48827	2037	45974	294367;294368;294369;294370;294371;294372;294373;294374;294375;294376;294377;294378;294379;294380;294381;294382;294383;294384;294385;294386;294387;294388;294389;294390;294391;294392;294393;294394;294395;294396;294397	395064;395065;395066;395067;395068;395069;395070;395071;395072;395073;395074;395075;395076;395077;395078;395079;395080;395081;395082;395083;395084;395085;395086;395087;395088;395089;395090;395091;395092;395093;395094;395095;395096;395097;395098;395099;395100;395101;395102;395103;395104;395105;395106;395107;395108;395109;395110;395111;395112;395113;395114;395115	395105			52	
SYCNDQSTGDIK	1	Unmodified	1386.5722	0.57215846	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	3.4	4.8	4					1				1	1	2	1	16.423	14.56	2	3.3705E-31	12135	160511_QHF_FH_JSI11i_1	185.77	180.4			1.2541	1.2109	34.177	5	1	Median	1.9501	1.6127	NaN	1	0	Median	0.69155	0.82399	NaN	1	1	Median	0.99376	0.96282	32.423	2	0	Median	1.4515	1.5115	NaN	1	0	Median	350520000	175630000	174900000	62840000	24164000	38676000	82511000	49514000	32998000	85552000	53588000	31964000	119620000	48361000	71258000	48828	772	45975	294398;294399;294400;294401;294402	395116;395117;395118;395119	395116			4	
SYCSNLVR	0	Unmodified	997.46511	0.46511462	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		22.478	21.819	2	0.022642	18022	160511_QHF_FH_JSI11i_2	43.769	25.734			1.2728	1.1809	41.647	2	0	Median	1.8444	1.5853	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8783	0.87968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141380000	82446000	58937000	34244000	16844000	17400000	0	0	0	107140000	65602000	41537000	0	0	0	48829	5658	45976	294403;294404	395120	395120			1	
SYDEAILHLVVAGLGSK	1	Unmodified	1770.9516	0.95159983	3211	Q7KYR7	BTN2A1	Butyrophilin subfamily 2 member A1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				91.641	82.863	3	0.0003448	46459	160513_QHF_FH_JSI9Kac_6	63.827	43.09			2.1486	1.8351	NaN	1	0	Median	2.1486	1.8351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17646000	6058300	11588000	17646000	6058300	11588000	0	0	0	0	0	0	0	0	0	48830	3211	45977	294405	395121	395121			1	
SYDFEFMQVEK	1	Unmodified	1421.6173	0.61731774	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	75.469	74.797	2	1.7844E-09	65981	160511_QHF_FH_JSI9i_2	132.78	106.26			1.1052	1.0638	12.072	8	0	Median	1.1052	0.93546	6.4063	2	0	Median	0.8903	1.0638	0.58231	2	0	Median	1.1611	1.119	0.029892	2	0	Median	1.1041	1.1746	20.071	2	0	Median	753140000	355320000	397830000	156400000	79165000	77231000	201610000	110960000	90650000	235600000	88256000	147350000	159540000	76941000	82597000	48831	525	45978	294406;294407;294408;294409;294410;294411;294412;294413	395122;395123;395124;395125;395126;395127;395128;395129;395130	395124			8	
SYDQVHSGK	1	Unmodified	1019.4672	0.46722311	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	6.2669	5.8771	2	0.00028171	3837	160511_QHF_FH_JSI12i_2	83.647	59.492			1.0593	1.11	33.492	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4217	1.4066	NaN	1	0	Median	0.78934	0.87596	NaN	1	0	Median	75402000	40271000	35132000	0	0	0	0	0	0	47757000	24508000	23249000	27646000	15763000	11883000	48832	2624	45979	294414;294415	395131	395131			1	
SYDSLHRPK	1	Unmodified	1101.5567	0.55670682	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		10.082	9.7645	3	0.011324	7526	160511_QHF_FH_JSI10i_3	34.692	24.588			0.69889	0.72793	8.8397	2	0	Median	NaN	NaN	NaN	0	0	Median	0.66626	0.77488	NaN	1	0	Median	0.73312	0.68382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	110110000	63781000	46333000	0	0	0	42980000	28222000	14758000	67134000	35559000	31575000	0	0	0	48833	3570	45980	294416;294417	395132;395133	395133			2	
SYDSYEILGK	1	Unmodified	1173.5554	0.55536941	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	52.756	51.829	2	0.00094243	46065	160511_QHF_FH_JSI9i_1	68.846	56.61			0.84437	0.78624	21.414	2	1	Median	1.1148	0.91478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63953	0.67576	NaN	1	1	Median	76158000	41489000	34669000	38453000	18162000	20291000	0	0	0	0	0	0	37706000	23327000	14378000	48834	557	45981	294418;294419	395134;395135	395135			2	
SYDTDQGR	0	Unmodified	940.38864	0.38863844	4817	Q9HA64	FN3KRP	Ketosamine-3-kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	6.1191	2.3705	2	2.3633E-05	3613	160511_QHF_FH_JSI10i_1	138.9	110.38			0.94537	0.99498	10.276	6	0	Median	NaN	NaN	NaN	0	0	Median	0.88203	1.0271	9.5625	2	0	Median	0.9257	0.8998	8.9105	2	0	Median	1.0097	1.0705	5.2787	2	0	Median	325800000	167360000	158440000	0	0	0	104640000	49530000	55110000	109870000	59435000	50440000	111280000	58391000	52893000	48835	4817	45982	294420;294421;294422;294423;294424;294425	395136;395137;395138;395139;395140;395141;395142;395143	395138			8	
SYDVPPPPMEPDHPFYSNISK	1	Unmodified	2416.1045	0.10454801	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.52	2.54	6	13	7					1		6	8	7	6	71.93	70.749	2;3	1.2646E-29	62898	160511_QHF_FH_JSI9i_2	182.22	167.45			0.94435	0.98645	8.2836	24	9	Median	1.1923	1.003	9.9879	6	2	Median	0.83539	0.98314	11.532	7	4	Median	0.98527	0.9647	4.5606	7	3	Median	0.93143	1.0102	5.8576	4	0	Median	15227000000	7660800000	7566200000	2677100000	1213400000	1463700000	3917600000	2040000000	1877600000	5548000000	2828700000	2719300000	3084200000	1578700000	1505500000	48836	1144	45983	294426;294427;294428;294429;294430;294431;294432;294433;294434;294435;294436;294437;294438;294439;294440;294441;294442;294443;294444;294445;294446;294447;294448;294449;294450;294451;294452	395144;395145;395146;395147;395148;395149;395150;395151;395152;395153;395154;395155;395156;395157;395158;395159;395160;395161;395162;395163;395164;395165;395166;395167;395168;395169;395170;395171;395172;395173;395174;395175;395176;395177;395178;395179;395180;395181;395182;395183;395184;395185;395186;395187;395188;395189;395190;395191;395192;395193;395194;395195;395196;395197;395198;395199;395200;395201;395202;395203;395204;395205;395206;395207;395208;395209;395210;395211;395212;395213;395214;395215;395216;395217;395218;395219;395220;395221;395222;395223;395224;395225;395226;395227;395228;395229;395230;395231;395232;395233;395234;395235;395236;395237;395238	395204			95	
SYDVPPPPMEPDHPFYSNISK	1	Oxidation (M)	2432.0995	0.099462633	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.56	4	5	3					1		3	4	3	3	64.202	62.581	3	2.4009E-15	57256	160511_QHF_FH_JSI12i_1	132.14	128.07			0.96174	0.99249	10.98	13	4	Median	1.1406	0.96065	3.249	3	1	Plateau	0.85896	1.0295	9.7115	4	2	Median	0.96174	0.96895	8.3002	3	1	Median	0.92616	1.0561	19.112	3	0	Median	2369100000	1269800000	1099300000	337230000	174440000	162790000	778050000	436850000	341200000	668320000	338770000	329550000	585540000	319780000	265760000	48837	1144	45983	294453;294454;294455;294456;294457;294458;294459;294460;294461;294462;294463;294464;294465	395239;395240;395241;395242;395243;395244;395245;395246;395247;395248;395249;395250;395251;395252;395253;395254;395255;395256;395257;395258;395259;395260;395261;395262;395263;395264;395265;395266;395267;395268	395247		782	30	
SYDVPPPPMEPDHPFYSNISKDRR	1	Acetyl (K)	2885.3443	0.34427779	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	1	0	0	2			By MS/MS		16	0									1			1		74.382	65.027	4	0.00021398	35357	160513_QHF_FH_JSI11Kac_6	75.112	68.389			0.19686	0.19084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19686	0.19084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31033000	29286000	1746500	0	0	0	0	0	0	31033000	29286000	1746500	0	0	0	48838	1144	45984	294466	395269	395269	1007		1	
SYDYDLIIIGGGSGGLAAAK	1	Unmodified	1939.9891	0.98910755	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	92.079	91.677	2;3	6.9834E-08	83023	160511_QHF_FH_JSI10i_1	136.83	131.34			0.79187	0.83783	23.276	8	1	Median	1.3257	1.0742	20.636	2	1	Median	0.68829	0.80137	14.082	2	0	Median	0.85244	0.82925	8.1747	2	0	Median	0.63512	0.66133	26.735	2	0	Median	291760000	172980000	118770000	37344000	18245000	19099000	90531000	55221000	35310000	74323000	42181000	32142000	89558000	57336000	32222000	48839	2778	45985	294467;294468;294469;294470;294471;294472;294473;294474	395270;395271;395272;395273;395274;395275;395276;395277;395278;395279;395280;395281;395282;395283;395284;395285;395286;395287	395280			18	
SYDYHQNWGR	0	Acetyl (Protein N-term)	1366.5691	0.56906242	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	1	0	0			By MS/MS		2	0		1										1		37.559	37.115	2	0.00023849	31775	160511_QHF_FH_JSI11i_2	82.75	77.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48840	4681	45986	294475	395288;395289	395289			2	
SYEALVQHVIEDHER	0	Unmodified	1823.8802	0.8802258	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.846	64.556	3	0.0025456	55723	160511_QHF_FH_JSI12i_3	46.39	36.641			0.70073	0.74068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70073	0.74068	NaN	1	0	Median	58260000	34237000	24023000	0	0	0	0	0	0	0	0	0	58260000	34237000	24023000	48841	4679	45987	294476	395290	395290			1	
SYEAYVLNIVR	0	Unmodified	1325.698	0.69795133	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.54		4						3	4	2	3	3	3	80.853	75.067	2	7.3011E-20	39563	160513_QHF_FH_JSI11Kac_6	166.66	134.72			1.0598	1.1444	22.55	10	3	Median	1.2942	1.118	10.394	2	0	Median	0.86625	1.05	13.404	2	0	Median	1.0185	0.95664	43.304	3	1	Median	1.1011	1.1677	5.7797	3	2	Median	1614400000	800430000	813930000	263230000	106870000	156360000	640620000	350110000	290510000	146080000	71745000	74336000	564430000	271710000	292720000	48842	822	45988	294477;294478;294479;294480;294481;294482;294483;294484;294485;294486;294487	395291;395292;395293;395294;395295;395296;395297;395298;395299;395300;395301;395302;395303;395304	395294			12	
SYEDATK	1	Unmodified	812.35521	0.35521304	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	2	2	6.676	3.6477	2	0.017485	2757	160513_QHF_FH_JSI11Kac_3	72.789	35.695			0.90603	0.97021	17.67	5	0	Median	NaN	NaN	NaN	0	0	Median	0.78067	0.94783	NaN	1	0	Median	0.98724	0.96307	27.711	2	0	Median	1.0035	1.0911	16.611	2	0	Median	813140000	436800000	376340000	0	0	0	286650000	167690000	118960000	253360000	100370000	152990000	273140000	168740000	104400000	48843	1293	45989	294488;294489;294490;294491;294492	395305;395306	395305			2	
SYEEHLEK	1	Unmodified	1033.4716	0.47163978	2111	P82914	MRPS15	28S ribosomal protein S15, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		12.302	11.921	3	0.0040651	9775	160511_QHF_FH_JSI10i_2	44.318	35.103			0.65739	0.72412	8.6332	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6366	0.7697	NaN	1	0	Median	0.67886	0.68124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160700000	101080000	59622000	0	0	0	55692000	39303000	16390000	105010000	61776000	43233000	0	0	0	48844	2111	45990	294493;294494	395307;395308	395308			2	
SYEGEEDTPMGLLLGGVK	1	Unmodified	1893.903	0.90299466	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	1	3	99.237	99.102	2;3	3.4238E-11	89862	160511_QHF_FH_JSI11i_1	137.59	123.92			1.1509	1.1414	39.283	5	5	Median	NaN	NaN	NaN	0	0	Median	0.74493	0.83987	NaN	1	1	Median	1.5181	1.4727	NaN	1	1	Median	1.7282	1.8117	47.922	3	3	Plateau	88602000	47820000	40781000	0	0	0	32460000	24368000	8091800	16014000	6551300	9462300	40128000	16901000	23227000	48845	4152	45991	294495;294496;294497;294498;294499	395309;395310;395311;395312;395313;395314	395309			6	
SYELPDGQVITIGNER	0	Unmodified	1789.8846	0.88464248	2062;1916;2070;2015;2865	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63267;P62736;P63261;P68032;P68133;Q562R1	ACTB;POTEE;POTEF;POTEKP;ACTG2;ACTA2;ACTG1;ACTC1;ACTA1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.28	17	8	4				2	2		9	6	8	10	76.436	74.848	2;3	2.3275E-72	69547	160511_QHF_FH_JSI12i_1	275.35	257.76			1.0093	1.0675	19.454	32	11	Median	1.4834	1.2894	18.091	9	3	Median	0.91228	1.0879	13.56	6	1	Median	0.94987	0.9541	12.418	8	4	Median	0.94685	1.03	20.951	9	3	Median	72092000000	35780000000	36311000000	20187000000	8353500000	11834000000	4651100000	2307500000	2343600000	13355000000	6921800000	6433600000	33898000000	18198000000	15700000000	48846	1916;2015;2062;2070;2865	45992	294500;294501;294502;294503;294504;294505;294506;294507;294508;294509;294510;294511;294512;294513;294514;294515;294516;294517;294518;294519;294520;294521;294522;294523;294524;294525;294526;294527;294528;294529;294530;294531;294532	395315;395316;395317;395318;395319;395320;395321;395322;395323;395324;395325;395326;395327;395328;395329;395330;395331;395332;395333;395334;395335;395336;395337;395338;395339;395340;395341;395342;395343;395344;395345;395346;395347;395348;395349;395350;395351;395352;395353;395354;395355;395356;395357;395358;395359;395360;395361;395362;395363;395364;395365;395366;395367;395368;395369;395370;395371;395372;395373	395341			59	
SYENQKPPFDAK	2	Unmodified	1422.6779	0.67794416	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.84	2	8	7				2	2		4	5	5	7	27.787	25.3	2;3	4.8401E-05	21112	160511_QHF_FH_JSI12i_2	72.891	58.634			1.0318	1.0885	27.448	20	5	Median	1.7587	1.4674	47.355	4	2	Median	0.78106	0.97698	16.348	5	0	Median	1.0915	1.1226	9.8075	5	1	Median	1.1473	1.2369	16.839	6	2	Median	2792600000	1383400000	1409100000	457780000	198300000	259480000	567950000	312060000	255900000	895480000	453400000	442080000	871360000	419690000	451680000	48847	1100	45993	294533;294534;294535;294536;294537;294538;294539;294540;294541;294542;294543;294544;294545;294546;294547;294548;294549;294550;294551;294552;294553	395374;395375;395376;395377;395378;395379;395380;395381;395382;395383;395384;395385;395386;395387;395388;395389;395390;395391;395392;395393;395394;395395;395396;395397;395398;395399;395400;395401;395402;395403;395404;395405;395406	395376			33	
SYENQKPPFDAK	2	Acetyl (K)	1464.6885	0.68850885	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	48.508	39.283	2	0.0011743	20925	160513_QHF_FH_JSI10Kac_3	81.865	65.974			0.39421	0.40748	84.138	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.66746	0.77032	NaN	1	0	Median	0.37947	0.36915	NaN	1	0	Median	1.821	1.9777	NaN	1	1	Median	8962500	4958500	4004000	0	0	0	2371300	1294900	1076400	3001400	2278300	723110	3589800	1385400	2204500	48848	1100	45993	294554;294555;294556	395407;395408;395409;395410	395410	952		4	
SYEPLEDPGVK	1	Unmodified	1232.5925	0.5924832	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.51	4	2				3				1	4	2	2	44.824	40.895	2	7.194E-06	36405	160511_QHF_FH_JSI10i_1	109.83	98.236			1.0923	1.0524	57.898	8	3	Median	1.1282	0.94371	NaN	1	0	Median	1.0792	1.2789	92.084	3	2	Median	0.97055	0.95644	19.159	2	1	Median	1.0798	1.1691	20.497	2	0	Median	7648100000	3772500000	3875600000	1727300000	642110000	1085200000	1924600000	1024500000	900060000	1914500000	890800000	1023700000	2081700000	1215100000	866580000	48849	1471	45994	294557;294558;294559;294560;294561;294562;294563;294564;294565	395411;395412;395413;395414;395415;395416;395417;395418;395419;395420;395421;395422;395423;395424;395425;395426	395417			16	
SYESQIEVMAAEVAK	1	Unmodified	1653.792	0.79198764	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								1	1	4	4	81.883	81.277	2;3	8.8231E-40	71405	160511_QHF_FH_JSI11i_2	232.25	214.82			0.50766	0.47665	50.196	9	7	Median	0.50766	0.42277	NaN	1	1	Median	0.56113	0.66072	NaN	1	1	Median	0.466	0.43957	47.289	4	3	Median	0.79478	0.85777	55.037	3	2	Median	383700000	246480000	137220000	22930000	16005000	6924700	46604000	25008000	21596000	258750000	173220000	85526000	55419000	32243000	23176000	48850	679	45995	294566;294567;294568;294569;294570;294571;294572;294573;294574;294575	395427;395428;395429;395430;395431;395432;395433;395434;395435;395436;395437;395438	395437			12	
SYESQMVIRPHK	1	Unmodified	1473.7398	0.73983291	4935	Q9NQZ5	STARD7	StAR-related lipid transfer protein 7, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			26.116	24.823	3	0.029769	20515	160511_QHF_FH_JSI10i_3	30.331	14.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48851	4935	45996	294576	395439	395439			1	
SYEVTVENFLR	0	Unmodified	1355.6721	0.67213051	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	78.193	77.333	2	2.6534E-05	68171	160511_QHF_FH_JSI9i_2	99.653	79.324			1.4766	1.478	12.067	3	2	Plateau	1.424	1.2489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4766	1.478	NaN	1	1	Median	1.0802	1.1698	NaN	1	1	Median	84341000	39620000	44721000	17909000	7667100	10242000	0	0	0	33793000	14288000	19505000	32639000	17665000	14974000	48852	3867	45997	294577;294578;294579	395440;395441;395442;395443	395441			4	
SYFLIVR	0	Unmodified	896.51199	0.51198846	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	73.4	64.053	2	1.422E-12	35105	160513_QHF_FH_JSI10Kac_6	160.69	93.316			1.1665	1.1684	7.1441	6	0	Median	1.4614	1.2494	8.4884	2	0	Median	0.93263	1.0937	2.1868	2	0	Median	1.2079	1.1603	NaN	1	0	Median	1.1266	1.1771	NaN	1	0	Median	2465300000	1154300000	1311000000	407050000	160350000	246700000	963850000	476190000	487660000	533740000	248360000	285380000	560690000	269400000	291290000	48853	133	45998	294580;294581;294582;294583;294584;294585	395444;395445;395446;395447;395448;395449;395450;395451	395451			8	
SYFLIVRK	1	Unmodified	1024.607	0.60695147	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	1	By matching	By MS/MS		By matching	16	0									3	1	1		1	57.632	48.452	2	0.013678	26578	160513_QHF_FH_JSI10Kac_6	89.142	37.355			0.84737	0.94011	6.2999	3	0	Median	1.168	0.99921	NaN	1	0	Median	0.74527	0.88094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84737	0.94011	NaN	1	0	Median	40714000	24304000	16411000	11461000	5984700	5476700	25015000	16010000	9005300	0	0	0	4237800	2309100	1928600	48854	133	45999	294586;294587;294588	395452;395453	395452			2	
SYFSEEGIGYNIIR	0	Unmodified	1646.794	0.79403656	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								1	1	3	77.223	76.405	2	2.1539E-10	67050	160511_QHF_FH_JSI11i_2	185.77	170.63			0.94011	1.0092	32.973	5	3	Median	NaN	NaN	NaN	0	0	Median	0.75868	0.91276	NaN	1	0	Median	0.9966	1.0156	NaN	1	0	Median	0.85468	0.97065	41.463	3	3	Plateau	213950000	106480000	107470000	0	0	0	42464000	22356000	20108000	57414000	26875000	30539000	114070000	57245000	56823000	48855	802	46000	294589;294590;294591;294592;294593	395454;395455;395456;395457;395458;395459;395460;395461	395456			8	
SYFSQYGEVVDCVIMK	1	Unmodified	1923.8747	0.87467142	4053	Q96EP5	DAZAP1	DAZ-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	93.777	93.381	2	3.7134E-05	82042	160511_QHF_FH_JSI11i_2	109.84	96.417			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9352600	9352600	0	0	0	0	0	0	0	9352600	9352600	0	0	0	0	48856	4053	46001	294594;294595	395462;395463	395463			2	
SYFSSFTDDIISQPMLK	1	Unmodified	1977.9394	0.93938016	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	1	3	2	100.86	100.73	2;3	7.1128E-222	86579	160511_QHF_FH_JSI12i_2	376.63	351.78			0.95431	1.0487	36.138	7	2	Median	1.2378	1.0487	NaN	1	0	Median	0.89295	1.0706	NaN	1	0	Median	0.93581	0.92799	50.098	3	1	Median	1.0039	1.1215	6.4561	2	1	Median	849030000	425420000	423610000	92016000	39250000	52766000	118890000	62464000	56426000	370850000	199730000	171110000	267280000	123970000	143310000	48857	611	46002	294596;294597;294598;294599;294600;294601;294602	395464;395465;395466;395467;395468;395469;395470;395471;395472;395473;395474	395467			11	
SYGANFSWNK	1	Unmodified	1172.5251	0.52507234	310	O43181	NDUFS4	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	1	2	49.793	47.136	2	2.6705E-07	39349	160511_QHF_FH_JSI10i_3	113.71	94.435			1.1765	1.275	10.745	5	0	Median	1.8505	1.5096	NaN	1	0	Median	1.1633	1.3482	NaN	1	0	Median	1.1765	1.1327	NaN	1	0	Median	1.1798	1.2508	2.7042	2	0	Median	482360000	226530000	255820000	17828000	7379800	10448000	42493000	23391000	19102000	176230000	77227000	99004000	245800000	118530000	127270000	48858	310	46003	294603;294604;294605;294606;294607	395475;395476;395477;395478	395476			2	
SYGATATSPGER	0	Unmodified	1195.5469	0.54692999	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.78	12.357	2	3.6862E-05	9904	160511_QHF_FH_JSI11i_1	123.79	79.345			1.0221	1.0345	10.649	4	0	Median	1.3912	1.1318	NaN	1	0	Median	0.80874	0.93799	NaN	1	0	Median	1.1531	1.133	NaN	1	0	Median	0.90603	0.94554	NaN	1	0	Median	368380000	191830000	176550000	69440000	31233000	38207000	103270000	54246000	49026000	119720000	64064000	55657000	75948000	42283000	33665000	48859	3691	46004	294608;294609;294610;294611	395479;395480;395481;395482;395483;395484;395485;395486	395479			8	
SYGFNAAR	0	Unmodified	884.41407	0.41406533	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	22.391	21.842	2	0.037165	17934	160511_QHF_FH_JSI12i_3	40.103	23.176			0.98958	1.0421	6.8547	4	0	Median	1.3463	1.1438	NaN	1	0	Median	0.87273	1.0516	NaN	1	0	Median	0.96775	0.96856	NaN	1	0	Median	1.0119	1.0328	NaN	1	0	Median	361210000	185750000	175470000	76330000	37937000	38393000	119910000	64699000	55208000	67712000	38670000	29042000	97265000	44442000	52824000	48860	1778	46005	294612;294613;294614;294615	395487;395488	395488			2	
SYGIPFIETSAK	1	Unmodified	1311.6711	0.67106787	785;786	P01111;P01116	NRAS;KRAS	GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.6	5.2		4						1		1	2	2		76.59	73.404	2	1.5518E-05	66342	160511_QHF_FH_JSI10i_2	93.258	57.747			1.0224	0.96266	13.286	4	1	Median	1.0746	0.93923	NaN	1	0	Median	0.74547	0.92372	NaN	1	1	Median	1.107	1.1021	15.653	2	0	Median	NaN	NaN	NaN	0	0	Median	582850000	301440000	281410000	133080000	70714000	62365000	179150000	101860000	77289000	270630000	128870000	141750000	0	0	0	48861	785;786	46006	294616;294617;294618;294619;294620	395489;395490;395491;395492;395493;395494;395495	395495			7	
SYGPAPGAGHVQEESNLSLQALESR	0	Unmodified	2596.2518	0.25175761	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	64.598	63.947	3	3.3742E-127	56792	160511_QHF_FH_JSI11i_3	281.4	271.42			0.95235	1.0074	8.367	6	0	Median	1.3927	1.1981	NaN	1	0	Median	0.845	1.0448	NaN	1	0	Median	1.0233	1.0005	5.1068	2	0	Median	0.90695	0.96883	1.4017	2	0	Median	1756500000	820100000	936410000	293450000	121150000	172300000	360340000	183170000	177160000	678510000	312920000	365590000	424220000	202860000	221360000	48862	2362	46007	294621;294622;294623;294624;294625;294626	395496;395497;395498;395499;395500;395501;395502;395503;395504;395505;395506	395497			11	
SYGPAPGAGHVQEESNLSLQALESRQDDILK	1	Unmodified	3308.6273	0.62731216	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		75.573	75.203	4	0.00020955	66934	160511_QHF_FH_JSI10i_2	42.973	32.551			1.4318	1.5438	76.697	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1447	2.6553	NaN	1	1	Median	0.95591	0.89756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41484000	17468000	24016000	0	0	0	24603000	6786900	17816000	16881000	10681000	6200000	0	0	0	48863	2362	46008	294627;294628	395507;395508;395509	395509			3	
SYGRPPPDVEGMTSLK	1	Acetyl (Protein N-term)	1774.856	0.85598488	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								3	3	3	1	60.936	60.269	2;3	2.9957E-15	54321	160511_QHF_FH_JSI10i_1	77.185	41.771			1.223	1.2881	12.246	8	0	Median	1.3488	1.0864	1.3076	2	0	Median	1.1843	1.4442	5.8233	3	0	Median	1.2645	1.234	13.563	2	0	Median	1.1868	1.2643	NaN	1	0	Median	5617000000	2249700000	3367300000	1285700000	481630000	804120000	1650000000	699910000	950130000	1393300000	550360000	842940000	1287900000	517800000	770120000	48864	2165	46009	294629;294630;294631;294632;294633;294634;294635;294636;294637;294638	395510;395511;395512;395513;395514;395515;395516;395517;395518;395519;395520;395521;395522;395523;395524	395517			15	
SYGRPPPDVEGMTSLK	1	Acetyl (Protein N-term);Oxidation (M)	1790.8509	0.85089951	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	1	1	1				By MS/MS	1	0	1												1	45.132	44.487	2	0.0025858	40443	160511_QHF_FH_JSI12i_1	47.915	31.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48865	2165	46009	294639	395525	395525		1815	1	
SYGVENR	0	Unmodified	823.38243	0.38243085	3659	Q8NFJ5	GPRC5A	Retinoic acid-induced protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.5	0.5	3	3									1	2	3	9.9707	9.5975	2	0.013163	7155	160511_QHF_FH_JSI12i_2	71.342	37.985			0.88613	0.98762	30.167	6	2	Median	NaN	NaN	NaN	0	0	Median	0.68738	0.8094	NaN	1	0	Median	1.1524	1.1369	16.809	2	0	Median	0.88036	0.98596	36.404	3	2	Median	561190000	290300000	270890000	0	0	0	88698000	51365000	37333000	162800000	68578000	94224000	309690000	170360000	139330000	48866	3659	46010	294640;294641;294642;294643;294644;294645	395526;395527;395528;395529	395527			4	
SYHEEFNPPK	1	Unmodified	1246.5619	0.56185177	1835	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.31		11	1					6	1	3	4	5	7	28.089	23.757	2;3	5.4148E-19	19573	160511_QHF_FH_JSI11i_2	175.91	166.73			1.0608	1.0382	17.388	17	2	Plateau	1.188	1.028	7.3291	3	0	Plateau	0.95544	0.89215	28.769	4	0	Linear	1.1233	1.1343	15.435	4	0	Median	1.027	1.1433	13.63	6	2	Median	1458000000	752880000	705070000	226400000	97625000	128780000	291540000	164100000	127450000	574990000	291570000	283420000	365020000	199600000	165430000	48867	1835	46011	294646;294647;294648;294649;294650;294651;294652;294653;294654;294655;294656;294657;294658;294659;294660;294661;294662;294663;294664	395530;395531;395532;395533;395534;395535;395536;395537;395538;395539;395540;395541;395542;395543;395544;395545;395546;395547;395548;395549;395550;395551;395552;395553;395554;395555;395556;395557;395558;395559;395560;395561;395562;395563;395564;395565	395549			36	
SYHLLVR	0	Unmodified	886.50249	0.5024864	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0	By MS/MS	By MS/MS			12.8	5.63			1						3	2	2			36.181	29.284	2;3	0.0063555	16383	160513_QHF_FH_JSI10Kac_6	58.981	27.692			0.87511	1.0523	24.574	4	0	Median	1.1145	0.9262	40.59	2	0	Median	0.87511	1.0523	1.1316	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94470000	51433000	43037000	59678000	34602000	25076000	34792000	16831000	17961000	0	0	0	0	0	0	48868	5207	46012	294665;294666;294667;294668	395566;395567;395568;395569;395570	395568			5	
SYHLSELVQQILK	1	Unmodified	1556.8562	0.85624288	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								3	2	1	97.955	97.877	2;3	4.0171E-06	86275	160511_QHF_FH_JSI11i_3	123.79	89.907			0.82869	0.86821	33.279	5	2	Median	NaN	NaN	NaN	0	0	Median	0.69614	0.80213	11.195	2	1	Median	1.4518	1.3781	32.164	2	1	Median	0.82869	0.85534	NaN	1	0	Median	98416000	52940000	45476000	0	0	0	24634000	15469000	9165300	48362000	21417000	26945000	25420000	16054000	9365300	48869	940	46013	294669;294670;294671;294672;294673;294674	395571;395572;395573;395574;395575;395576;395577	395572			6	
SYHWPFPWPVVHLSR	0	Unmodified	1906.9631	0.96310799	3349	Q86VZ5	SGMS1	Phosphatidylcholine:ceramide cholinephosphotransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									5	2	1	1	1	86.979	78.637	4	0.0004183	43238	160513_QHF_FH_JSI9Kac_6	76.82	66.481			1.0111	1.0639	8.6543	5	2	Median	1.2633	1.0796	12.33	2	2	Median	0.88878	1.0639	NaN	1	0	Median	0.98292	0.93846	NaN	1	0	Median	1.0111	1.074	NaN	1	0	Median	319740000	144720000	175010000	127470000	53338000	74129000	124990000	61242000	63749000	27630000	12027000	15603000	39649000	18114000	21535000	48870	3349	46014	294675;294676;294677;294678;294679	395578;395579;395580;395581;395582;395583;395584	395579			7	
SYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQK	1	Unmodified	3825.9578	0.95775443	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.57	98.852	4	2.0201E-133	58527	160513_QHF_FH_JSI10Kac_6	244.31	238.22			0.85044	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85044	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	375540000	197770000	177770000	0	0	0	375540000	197770000	177770000	0	0	0	0	0	0	48871	21	46015	294680	395585;395586	395586			2	
SYIEYQLTPTNTNR	0	Unmodified	1698.8213	0.82131394	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.364	52.394	2	1.3061E-06	44761	160511_QHF_FH_JSI12i_2	134.2	127.51			1.0412	1.1121	17.24	4	0	Median	1.5815	1.3107	NaN	1	0	Median	0.6993	0.86344	NaN	1	0	Median	1.076	1.1189	NaN	1	0	Median	1.0076	1.1053	NaN	1	0	Median	124420000	63525000	60891000	25551000	12790000	12761000	29098000	16031000	13067000	36355000	18695000	17660000	33413000	16010000	17403000	48872	5685	46016	294681;294682;294683;294684	395587;395588;395589;395590;395591	395587			5	
SYIFEGALGMSNR	0	Unmodified	1443.6816	0.68164933	2823	Q3ZAQ7	VMA21	Vacuolar ATPase assembly integral membrane protein VMA21	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			73.921	72.481	2	0.014015	60693	160511_QHF_FH_JSI10i_3	66.595	59.215			1.3832	1.6217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3832	1.6217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9501000	5101700	4399300	0	0	0	9501000	5101700	4399300	0	0	0	0	0	0	48873	2823	46017	294685	395592	395592			0	
SYIGSNHSSLGSMSPSNMEGYSK	1	Unmodified	2419.042	0.042024109	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.6	0.49		2	3							3	2			53.237	51.899	3	8.6815E-18	43370	160511_QHF_FH_JSI10i_3	139.79	135.44			0.91942	0.9269	29.722	5	1	Median	1.0925	0.9269	39.936	3	1	Median	0.81855	0.96704	13	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219990000	112270000	107720000	99472000	50912000	48560000	120510000	61357000	59157000	0	0	0	0	0	0	48874	2080	46018	294686;294687;294688;294689;294690	395593;395594;395595;395596;395597;395598;395599	395594			7	
SYIIAGGLGGFGLELAQWLIQR	0	Unmodified	2361.2845	0.28450171	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15	2				1					4	1	3	1		101.71	94.255	2;3	3.0961E-210	56616	160513_QHF_FH_JSI10Kac_6	385.8	351.36			1.0169	1.1709	8.8005	4	0	Median	1.4118	1.2177	NaN	1	0	Median	0.99499	1.1709	0.73019	2	0	Median	1.0303	0.99896	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1780800000	813870000	966910000	368190000	170920000	197270000	1400400000	636850000	763510000	12233000	6102300	6131200	0	0	0	48875	1650	46019	294691;294692;294693;294694;294695	395600;395601;395602;395603;395604;395605;395606;395607	395605			8	
SYIPGQPVTAVVQR	0	Acetyl (Protein N-term)	1555.8358	0.83584179	216	O14907	TAX1BP3	Tax1-binding protein 3	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.967	72.702	2	0.00020305	66063	160511_QHF_FH_JSI11i_1	88.596	71.571			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48876	216	46020	294696;294697	395608;395609	395608			2	
SYISEETR	0	Unmodified	983.45599	0.45598972	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	15.985	15.383	2	0.0076141	12477	160511_QHF_FH_JSI12i_2	58.981	47.076			1.3192	1.3846	2.571	3	0	Plateau	1.5034	1.3193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4295	1.3657	NaN	1	0	Median	1.2175	1.3872	NaN	1	0	Median	132600000	59807000	72793000	32317000	16231000	16086000	0	0	0	47300000	20093000	27207000	52984000	23484000	29501000	48877	2789	46021	294698;294699;294700	395610;395611;395612;395613	395613			4	
SYISFDILR	0	Unmodified	1112.5866	0.58660996	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	83.639	82.859	2	0.00030202	72906	160511_QHF_FH_JSI11i_2	83.265	69.107			0.79294	0.78185	3.9915	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.61746	0.78912	NaN	1	0	Median	0.80833	0.78185	NaN	1	0	Median	0.67051	0.73335	NaN	1	0	Median	44429000	26801000	17628000	0	0	0	12276000	8747500	3528900	17449000	10183000	7266400	14703000	7871000	6832400	48878	1665	46022	294701;294702;294703	395614;395615;395616	395615			3	
SYKDDSK	2	Acetyl (K)	883.39233	0.39232683	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	7.9611	0.85539	2	0.036446	3073	160513_QHF_FH_JSI12Kac_3	66.27	46.634			0.90468	0.95982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90468	0.95982	NaN	1	0	Median	9930800	5447200	4483700	0	0	0	0	0	0	0	0	0	9930800	5447200	4483700	48879	5124	46023	294704	395617	395617			1	
SYKNSGVISVK	2	Acetyl (K)	1222.6558	0.65575216	479	O75131	CPNE3	Copine-3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.001	36.561	2	0.019046	21767	160513_QHF_FH_JSI11Kac_4	59.542	43.339			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3339900	3339900	0	0	0	0	0	0	0	3339900	3339900	0	0	0	0	48880	479	46024	294705	395618	395618	245		1	
SYKPVFWSPSSR	1	Acetyl (K)	1481.7303	0.73031409	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	75.502	67.073	2	1.7923E-06	37112	160513_QHF_FH_JSI10Kac_6	115.29	87.544			0.79896	0.75554	55.231	3	1	Median	NaN	NaN	NaN	0	0	Median	0.3508	0.41779	NaN	1	1	Median	0.79896	0.75554	NaN	1	0	Median	1.1563	1.2597	NaN	1	0	Median	73584000	48622000	24961000	0	0	0	28231000	23741000	4490500	28395000	15883000	12513000	16957000	8999100	7958200	48881	4983	46025	294706;294707;294708	395619;395620;395621;395622	395622	3284		4	
SYKVSTSGPR	1	Acetyl (K)	1122.5669	0.56693715	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.7						1	3	3			2	2	3	29.86	20.869	2	3.1921E-06	13042	160513_QHF_FH_JSI12Kac_4	123.29	73.865		+	0.82859	0.94906	44.204	7	0	Median	NaN	NaN	NaN	0	0	Median	0.76294	0.91248	12.149	2	0	Median	0.47362	0.46484	20.044	2	0	Median	0.98406	1.0849	22.941	3	0	Median	119540000	67313000	52222000	0	0	0	37475000	19314000	18161000	38298000	25992000	12305000	43763000	22007000	21756000	48882	51	46026	294709;294710;294711;294712;294713;294714;294715	395623;395624;395625;395626;395627;395628;395629	395628	29		7	
SYLAQFAAR	0	Unmodified	1025.5294	0.52942943	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		46.229	45.495	2	0.0038843	40075	160511_QHF_FH_JSI10i_2	70.525	46.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48883	2084	46027	294716;294717	395630;395631	395631			2	
SYLEFSEDSVQVPR	0	Unmodified	1654.7839	0.7838658	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		70.521	69.762	2	0.00017477	61139	160511_QHF_FH_JSI11i_2	109.24	94.264			1.8365	1.5596	25.393	3	3	Median	1.8365	1.5596	NaN	1	1	Median	1.8485	2.2401	NaN	1	1	Median	1.3693	1.3732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75790000	29281000	46509000	29701000	11135000	18566000	20825000	7807900	13017000	25264000	10338000	14926000	0	0	0	48884	1726	46028	294718;294719;294720	395632;395633;395634	395633			3	
SYLEKVATGK	2	Acetyl (K)	1136.6077	0.60773933	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	1	0	0	1		By matching	By MS/MS		14.3	0.471							2	1			1	2		52.637	41.966	2	0.00021145	24491	160513_QHF_FH_JSI11Kac_4	98.04	70.737			0.26325	0.25759	66.487	3	0	Median	NaN	NaN	NaN	0	0	Median	0.61474	0.73022	NaN	1	0	Median	0.23754	0.23372	13.75	2	0	Median	NaN	NaN	NaN	0	0	Median	21233000	15749000	5484200	0	0	0	3555500	2021000	1534600	17677000	13728000	3949700	0	0	0	48885	1748	46029	294721;294722;294723	395635;395636;395637	395636	1770		3	
SYLENPAFMLLDLK	1	Unmodified	1652.8484	0.84838031	991	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.06	101.95	2	8.4595E-15	89752	160511_QHF_FH_JSI11i_2	162.31	143.06			0.8801	1.1482	15.15	4	3	Linear	0.89819	0.77188	NaN	1	1	Median	0.72102	0.87265	NaN	1	1	Median	1.0992	1.104	NaN	1	0	Median	0.86237	0.96233	NaN	1	1	Median	438570000	213810000	224760000	96755000	46818000	49936000	116270000	64534000	51733000	104740000	41829000	62906000	120810000	60624000	60185000	48886	991	46030	294724;294725;294726;294727	395638;395639;395640;395641	395640			4	
SYLFLLSSDYER	0	Unmodified	1491.7246	0.72456001	2335	Q12979	ABR	Active breakpoint cluster region-related protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.882	86.75	2	0.00044771	75325	160511_QHF_FH_JSI12i_3	73.067	55.631			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48887	2335	46031	294728	395642	395642			1	
SYLFQLLQGLAFCHSHR	0	Unmodified	2076.0363	0.036349287	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			91.562	84.313	4	3.4634E-08	48590	160513_QHF_FH_JSI10Kac_6	115.31	106.26			1.0437	1.0451	2.2838	2	0	Median	1.267	1.0621	NaN	1	0	Median	0.85975	1.0284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	732580000	405000000	327580000	179440000	82297000	97146000	553140000	322710000	230430000	0	0	0	0	0	0	48888	1252	46032	294729;294730	395643;395644;395645	395644			3	
SYLLKINGK	2	Acetyl (K)	1076.623	0.62299547	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.351	54.666	2	0.0016069	29610	160513_QHF_FH_JSI11Kac_6	88.37	55.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7348900	7348900	0	0	0	0	0	0	0	7348900	7348900	0	0	0	0	48889	1242	46033	294731	395646	395646	1139		1	
SYLLSLPTGDVPMDGMSVSDLGPVVLSLLK	1	Unmodified	3102.6233	0.62326133	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.89	103.79	3	2.763E-10	91543	160511_QHF_FH_JSI11i_2	69.578	64.674			1.2232	1.2403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2232	1.2403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19639000	12619000	7020000	0	0	0	0	0	0	19639000	12619000	7020000	0	0	0	48890	4844	46034	294732	395647	395647			1	
SYLLVYYPHIVVPPLPEK	1	Unmodified	2126.1816	0.18159977	658	O95219	SNX4	Sorting nexin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.516	82.206	3	9.6647E-25	47549	160513_QHF_FH_JSI10Kac_6	156.11	147.72			1.062	1.1071	9.8285	4	0	Median	1.5282	1.2801	NaN	1	0	Median	0.93167	1.1043	NaN	1	0	Median	1.1789	1.1098	NaN	1	0	Median	0.95662	1.0092	NaN	1	0	Median	567350000	266230000	301120000	130510000	49145000	81363000	164880000	92448000	72435000	166890000	73897000	92991000	105070000	50743000	54332000	48891	658	46035	294733;294734;294735;294736	395648;395649;395650;395651;395652;395653;395654;395655;395656	395655			9	
SYLMTNYESAPPSPQYK	1	Unmodified	1974.9033	0.90332901	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								2	3	3	3	58.938	58.232	2;3	3.3282E-41	50493	160511_QHF_FH_JSI11i_2	210.41	205.13			0.902	0.93478	7.7378	11	1	Median	1.0567	0.90456	0.13415	2	0	Median	0.88114	1.0485	9.5337	3	1	Median	0.96862	0.95721	8.3304	3	0	Median	0.902	0.93478	4.2373	3	0	Median	631310000	334600000	296710000	80795000	44233000	36562000	166470000	89176000	77297000	214250000	114130000	100120000	169790000	87058000	82734000	48892	494	46036	294737;294738;294739;294740;294741;294742;294743;294744;294745;294746;294747	395657;395658;395659;395660;395661;395662;395663;395664;395665;395666;395667;395668;395669;395670;395671;395672;395673;395674;395675	395673			19	
SYLMTNYESAPPSPQYKK	2	Unmodified	2102.9983	0.99829203	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	50.787	50.027	3	6.0352E-12	44228	160511_QHF_FH_JSI11i_3	144.5	136.96			1.0419	1.1828	14.116	5	2	Median	1.501	1.2674	NaN	1	0	Median	0.99586	1.1722	1.2785	2	1	Median	1.0419	0.98246	NaN	1	0	Median	1.4135	1.4486	NaN	1	1	Median	391160000	185860000	205300000	49712000	17279000	32434000	142580000	80156000	62426000	132610000	59767000	72841000	66260000	28657000	37603000	48893	494	46037	294748;294749;294750;294751;294752	395676;395677;395678;395679;395680;395681;395682;395683;395684;395685;395686;395687	395678			12	
SYLNMDAIMEAIKK	2	Unmodified	1625.8157	0.81569997	829	P05165	PCCA	Propionyl-CoA carboxylase alpha chain, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	95.854	95.751	3	0.0003212	82852	160511_QHF_FH_JSI12i_3	76.588	61.557			1.0273	1.0794	46.031	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2389	1.4284	NaN	1	0	Median	0.8518	0.81572	NaN	1	0	Median	1.0725	1.1219	69.082	2	2	Median	66668000	35226000	31443000	0	0	0	12192000	4911500	7280400	18672000	10269000	8402200	35805000	20045000	15760000	48894	829	46038	294753;294754;294755;294756	395688;395689;395690	395689			3	
SYLPPPEQPSSGSLK	1	Unmodified	1585.7988	0.79878758	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	46.78	46.299	2	4.2713E-06	41237	160511_QHF_FH_JSI9i_1	87.363	60.248			0.75882	0.83357	24.931	4	4	Median	NaN	NaN	NaN	0	0	Median	0.92289	1.0646	24.288	2	2	Median	0.75318	0.72132	NaN	1	1	Median	0.75781	0.77496	NaN	1	1	Median	149870000	84266000	65608000	0	0	0	64149000	30693000	33456000	30940000	23356000	7583700	54786000	30217000	24569000	48895	2956	46039	294757;294758;294759;294760;294761	395691;395692;395693;395694;395695;395696	395696			6	
SYLPQIS	0	Unmodified	806.41742	0.41741937	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.601	57.952	2	0.042042	52385	160511_QHF_FH_JSI10i_1	46.37	31.958			0.96129	0.99258	6.0872	4	0	Median	1.2679	1.0519	NaN	1	0	Median	0.83491	0.98439	NaN	1	0	Median	0.95728	0.90845	NaN	1	0	Median	0.96531	1.0008	NaN	1	0	Median	199010000	103440000	95575000	44387000	19935000	24452000	52596000	27684000	24912000	49089000	25474000	23615000	52938000	30342000	22596000	48896	4834	46040	294762;294763;294764;294765	395697	395697			1	
SYLSGGAGAAGGGGADPGNK	1	Unmodified	1662.7598	0.75977631	1261	P25490	YY1	Transcriptional repressor protein YY1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.368	24.809	2	1.0298E-17	21728	160511_QHF_FH_JSI11i_1	179.14	163.57			1.0001	1.0272	16.045	4	2	Median	1.6907	1.3966	NaN	1	0	Median	0.87083	1.0398	NaN	1	0	Median	1.0161	0.99247	NaN	1	1	Median	0.98434	1.0148	NaN	1	1	Median	290620000	144100000	146520000	57994000	25897000	32097000	77158000	41400000	35758000	83138000	42678000	40460000	72331000	34128000	38202000	48897	1261	46041	294766;294767;294768;294769	395698;395699;395700;395701;395702;395703;395704	395698			7	
SYLTPVRDEESESQRK	1	Unmodified	1922.9334	0.93338358	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			5							3	2			24.462	23.168	3;4	0.00063243	18560	160511_QHF_FH_JSI9i_3	67.358	56.079			1.2173	0.98529	23.66	5	0	Median	1.2557	1.0234	21.98	3	0	Median	0.72681	0.82274	0.025455	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169510000	79903000	89609000	110360000	49155000	61205000	59152000	30748000	28403000	0	0	0	0	0	0	48898	227	46042	294770;294771;294772;294773;294774	395705;395706;395707;395708;395709;395710	395707			6	
SYLVQYMQFSGSLHTK	1	Unmodified	1887.9189	0.91891949	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	2	1	77.265	70.54	3	3.6093E-12	38713	160513_QHF_FH_JSI10Kac_6	131.82	120.97			0.92467	0.88335	21.307	5	1	Median	0.92467	0.78479	NaN	1	0	Median	0.73733	0.8811	NaN	1	0	Median	1.2931	1.2264	9.7908	2	1	Median	0.84123	0.88335	NaN	1	0	Median	1670400000	839160000	831240000	417470000	206740000	210730000	696480000	398540000	297940000	331730000	140870000	190860000	224710000	93003000	131700000	48899	3904	46043	294775;294776;294777;294778;294779;294780	395711;395712;395713;395714;395715;395716;395717	395717			7	
SYLVQYMQFSGSLHTK	1	Oxidation (M)	1903.9138	0.91383411	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	70.515	61.332	3	5.0529E-12	32262	160513_QHF_FH_JSI12Kac_6	131.4	121.06			1.1051	1.0544	6.2805	2	0	Median	1.1868	1.0086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.029	1.1023	NaN	1	0	Median	137060000	68736000	68323000	94559000	48296000	46263000	0	0	0	0	0	0	42500000	20440000	22060000	48900	3904	46043	294781;294782	395718;395719;395720	395719		2339	3	
SYLYFEEK	1	Unmodified	1077.5019	0.50187728	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				61.681	51.003	2	0.048518	26933	160513_QHF_FH_JSI9Kac_5	43.808	32.214			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48901	5241	46044	294783	395721	395721			1	
SYLYFTQFK	1	Unmodified	1195.5914	0.59136099	3940	Q969H8	MYDGF	Myeloid-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.64	2	4	4					4	4	4	5	5	4	75.321	70.72	2	2.4323E-17	64426	160511_QHF_FH_JSI11i_3	182.57	126.85			1.0973	1.0676	10.593	18	0	Median	1.2033	0.9991	6.264	4	0	Median	0.876	1.0594	8.2648	5	0	Median	1.1144	1.111	11.358	5	0	Median	1.1329	1.1585	10.986	4	0	Median	20987000000	9948400000	11039000000	4388300000	1817700000	2570700000	6337100000	3146800000	3190200000	5403100000	2590500000	2812600000	4858800000	2393400000	2465400000	48902	3940	46045	294784;294785;294786;294787;294788;294789;294790;294791;294792;294793;294794;294795;294796;294797;294798;294799;294800;294801	395722;395723;395724;395725;395726;395727;395728;395729;395730;395731;395732;395733;395734;395735;395736;395737;395738;395739;395740;395741;395742;395743;395744;395745;395746;395747;395748;395749;395750;395751;395752;395753;395754;395755;395756;395757;395758;395759;395760;395761;395762	395724			41	
SYLYQILQGIVFCHSR	0	Unmodified	1983.0037	0.003652175	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.782	87.388	3	9.9392E-17	47189	160513_QHF_FH_JSI12Kac_6	135.28	106.7			1.0933	1.1031	12.912	4	0	Median	1.254	1.0549	NaN	1	0	Median	0.97673	1.1534	NaN	1	0	Median	0.98834	0.93593	NaN	1	0	Median	1.2094	1.267	NaN	1	0	Median	5374000000	2616000000	2758000000	860930000	362240000	498690000	2760000000	1405600000	1354400000	834660000	444210000	390440000	918440000	404030000	514400000	48903	850	46046	294802;294803;294804;294805	395763;395764;395765;395766	395765			4	
SYMAPER	0	Unmodified	852.37999	0.379988	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.5	0.5	3	3								1	2	2	1	14.304	13.909	2	0.010159	10987	160511_QHF_FH_JSI11i_2	76.035	66.794			0.99034	1.0246	17.516	6	0	Median	1.2195	1.048	NaN	1	0	Median	0.92128	1.1065	14.06	2	0	Median	0.92331	0.91233	0.5838	2	0	Median	1.3289	1.4201	NaN	1	0	Median	405080000	208570000	196510000	59333000	24277000	35056000	158410000	87211000	71201000	164910000	86916000	77994000	22426000	10168000	12258000	48904	1453	46047	294806;294807;294808;294809;294810;294811	395767;395768;395769	395768			3	
SYMIPENEFHHK	1	Unmodified	1530.6925	0.69254837	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	37.52	37.438	4	0.017839	31827	160511_QHF_FH_JSI12i_3	35.594	28.865			1.1595	1.1096	18.697	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3358	1.2665	NaN	1	0	Median	1.0064	0.97221	NaN	1	0	Median	81594000	36940000	44653000	0	0	0	0	0	0	37237000	14876000	22361000	44356000	22064000	22292000	48905	3675	46048	294812;294813	395770	395770			0	
SYMSPER	0	Unmodified	868.3749	0.37490263	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	13.291	12.735	2	0.019031	10088	160511_QHF_FH_JSI12i_2	58.981	8.0153			1.0566	1.1358	7.6622	3	0	Plateau	1.2995	1.1358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0433	1.0677	NaN	1	0	Median	1.1344	1.2434	NaN	1	0	Median	236660000	117020000	119640000	57543000	23973000	33570000	0	0	0	95354000	48077000	47277000	83767000	44971000	38796000	48906	2191	46049	294814;294815;294816	395771;395772	395771			2	
SYNDELQFLEK	1	Unmodified	1384.6511	0.65106071	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	68.084	67.508	2	1.0018E-18	61495	160511_QHF_FH_JSI12i_1	167.6	139.58			0.96787	0.97861	2.0372	4	0	Median	1.225	0.97892	NaN	1	0	Median	0.83982	0.97829	NaN	1	0	Median	1.0265	1.0126	NaN	1	0	Median	0.91256	0.96544	NaN	1	0	Median	1454800000	742600000	712230000	250070000	118760000	131310000	366230000	206590000	159630000	404620000	218120000	186500000	433920000	199130000	234790000	48907	5596	46050	294817;294818;294819;294820;294821	395773;395774;395775;395776;395777;395778;395779;395780	395776			8	
SYNSEVK	1	Unmodified	825.38685	0.38684752	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	7.8523	7.4278	2	0.014224	4990	160511_QHF_FH_JSI9i_1	67.464	52.929			2.3506	2.5585	11.528	3	3	Plateau	2.7061	2.2411	NaN	1	1	Median	2.3506	2.789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2569	2.3471	NaN	1	1	Median	1634300000	469230000	1165100000	511160000	129860000	381310000	565370000	174600000	390770000	0	0	0	557770000	164780000	392990000	48908	3173	46051	294822;294823;294824	395781;395782;395783	395783			3	
SYNYVVTAQK	1	Acetyl (Protein N-term)	1213.5979	0.59790293	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	1	0	0				By MS/MS	11	0				2									2	56.846	47.5	2	0.026569	19387	160513_QHF_FH_JSI12Kacf_1	37.344	28.812			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48909	2734	46052	294825;294826	395784;395785	395784			2	
SYPDEEGPK	1	Unmodified	1020.44	0.4400053	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6	3					3					2	2	2	17.403	12.898	2	0.00044533	11210	160511_QHF_FH_JSI11i_1	84.743	57.218			0.98993	1.0553	11.359	5	0	Median	NaN	NaN	NaN	0	0	Median	0.89354	1.0353	14.899	2	0	Median	1.0616	1.0553	NaN	1	0	Median	1.0452	1.1245	14.899	2	0	Median	444220000	217690000	226530000	0	0	0	211620000	116580000	95036000	6444800	2443200	4001600	226160000	98671000	127490000	48910	3593	46053	294827;294828;294829;294830;294831;294832	395786;395787;395788;395789;395790;395791;395792;395793	395786			8	
SYPGSQLDILIDQGK	1	Unmodified	1632.8359	0.83590137	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	78.984	78.553	2	0.00034524	71550	160511_QHF_FH_JSI11i_1	77.593	51.55			0.78788	0.78428	1.867	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82065	0.77399	NaN	1	0	Median	0.75642	0.7947	NaN	1	1	Median	55146000	29371000	25775000	0	0	0	0	0	0	24930000	13342000	11588000	30217000	16029000	14187000	48911	979	46054	294833;294834	395794;395795	395794			2	
SYPSLTTK	1	Unmodified	895.4651	0.46509784	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	3	1	27.74	27.119	2	0.005541	23675	160511_QHF_FH_JSI10i_2	62.546	41.991			0.96623	0.96104	59.337	6	4	Median	0.74566	0.62037	73.089	2	2	Median	1.0436	1.2068	NaN	1	0	Median	0.60128	0.59863	55.756	2	2	Median	1.5311	1.5633	NaN	1	0	Median	702420000	411600000	290820000	196690000	119060000	77623000	164810000	97640000	67166000	254550000	155210000	99348000	86378000	39690000	46687000	48912	2609	46055	294835;294836;294837;294838;294839;294840;294841;294842	395796;395797;395798;395799;395800;395801;395802;395803;395804;395805;395806	395806			11	
SYQALALWK	1	Unmodified	1078.5811	0.58113065	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	70.356	66.494	2	4.3394E-07	35106	160513_QHF_FH_JSI9Kac_6	135.79	92.545			0.99717	0.99068	15.623	10	1	Median	0.99717	0.84259	0.94017	2	0	Median	0.82899	0.98953	4.7617	2	0	Median	1.106	1.1537	12.674	3	0	Plateau	0.96527	1.0841	18.122	3	1	Median	1394100000	709130000	684940000	257370000	115850000	141520000	339300000	201100000	138190000	492000000	243660000	248340000	305400000	148510000	156890000	48913	558	46056	294843;294844;294845;294846;294847;294848;294849;294850;294851;294852	395807;395808;395809;395810;395811;395812;395813	395810			5	
SYQCDVCGKIFR	1	Acetyl (K)	1573.7017	0.70173285	2281	Q08AN1	ZNF616	Zinc finger protein 616	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	77.153	69.177	2;3	0.0041939	38296	160513_QHF_FH_JSI10Kac_6	66.435	19.616			1.0987	0.085468	156.75	5	1	Linear	1.1902	1.0029	NaN	1	0	Median	0.14623	0.17064	240.06	2	1	Median	1.1252	1.058	NaN	1	0	Median	1.0987	1.1624	NaN	1	0	Median	7923900000	5526300000	2397600000	1063400000	418070000	645290000	6223300000	4849100000	1374200000	353810000	140310000	213490000	283380000	118810000	164570000	48914	2281	46057	294853;294854;294855;294856;294857	395814;395815;395816;395817;395818	395817	2374		5	
SYQDPSNAQFLESIR	0	Unmodified	1753.8271	0.8271276	5453	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	2	2	1	66.021	65.305	2	3.7588E-21	59450	160511_QHF_FH_JSI12i_1	169.62	153.37			1.1219	0.82446	20.872	8	4	Linear	1.1823	0.96781	19.235	3	3	Median	0.8752	1.0449	37.243	2	1	Median	1.0334	1.0294	25.367	2	0	Median	0.84821	0.8736	NaN	1	0	Median	620960000	312870000	308090000	219270000	97060000	122210000	127020000	73573000	53451000	147270000	74333000	72936000	127390000	67901000	59492000	48915	5453	46058	294858;294859;294860;294861;294862;294863;294864;294865	395819;395820;395821;395822;395823;395824;395825;395826;395827;395828;395829	395821			11	
SYQFGIIGNDR	0	Unmodified	1268.6149	0.61494998	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	57.516	56.821	2	0.001036	50196	160511_QHF_FH_JSI10i_2	66.595	43.855			0.78255	0.86274	12.242	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64497	0.7912	NaN	1	0	Median	0.94946	0.94075	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	95491000	52615000	42876000	0	0	0	48872000	26973000	21898000	46619000	25642000	20977000	0	0	0	48916	4581	46059	294866;294867;294868	395830;395831;395832;395833	395833			4	
SYQGELK	1	Unmodified	823.40758	0.40758296	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.53	12.274	2	0.0094364	10146	160511_QHF_FH_JSI12i_1	68.915	52.761			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48917	4221	46060	294869;294870;294871	395834;395835;395836	395835			3	
SYQSFQTFR	0	Unmodified	1162.5407	0.5407224	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			41.328	39.815	2	0.011892	33227	160511_QHF_FH_JSI10i_3	48.283	22.546			0.90024	1.0082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90024	1.0082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21708000	9868600	11839000	0	0	0	21708000	9868600	11839000	0	0	0	0	0	0	48918	2305	46061	294872	395837	395837			1	
SYRDQQLLLLK	1	Unmodified	1375.7823	0.78234966	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				54.021	52.447	3	0.030795	42962	160511_QHF_FH_JSI9i_3	35.677	23.051			1.6766	1.3917	NaN	1	1	Median	1.6766	1.3917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16505000	7838000	8666800	16505000	7838000	8666800	0	0	0	0	0	0	0	0	0	48919	3855	46062	294873	395838	395838			1	
SYRDQTIVDPFSSK	1	Unmodified	1641.7999	0.79985021	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				52.626	51.036	3	0.0027832	41873	160511_QHF_FH_JSI9i_3	50.155	39.339			2.1061	1.7186	NaN	1	1	Median	2.1061	1.7186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20087000	6930700	13156000	20087000	6930700	13156000	0	0	0	0	0	0	0	0	0	48920	5479	46063	294874;294875	395839;395840	395840			2	
SYRLDIK	1	Unmodified	893.49707	0.49706667	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	28.42	27.506	3	0.044441	22798	160511_QHF_FH_JSI10i_3	30.167	4.4299			1.1277	1.2834	27.742	3	0	Plateau	1.225	1.0038	NaN	1	0	Median	1.1277	1.2834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7122	1.7462	NaN	1	0	Median	375710000	164810000	210890000	120650000	50978000	69670000	157930000	76413000	81520000	0	0	0	97126000	37421000	59705000	48921	220	46064	294876;294877;294878	395841;395842	395841			2	
SYSDPPLK	1	Unmodified	905.44945	0.44944778	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	5.99	4					4	3			1	3	3	4	27.53	21.799	2	0.00091687	18969	160511_QHF_FH_JSI11i_1	96.492	86.077			0.86172	0.95039	36.177	11	2	Median	1.0248	0.82232	NaN	1	0	Median	0.80492	0.95039	14.579	3	1	Plateau	0.86172	0.82683	17.059	3	0	Plateau	0.8866	0.94929	58.322	4	1	Median	4049000000	1928100000	2121000000	932610000	429810000	502810000	828540000	431540000	396990000	1157600000	503780000	653820000	1130300000	562970000	567330000	48922	1775	46065	294879;294880;294881;294882;294883;294884;294885;294886;294887;294888;294889	395843;395844;395845;395846;395847;395848;395849;395850;395851;395852;395853;395854;395855;395856;395857;395858;395859	395843			17	
SYSEDDIHR	0	Unmodified	1120.4785	0.47851608	3291;5654;4548	Q7Z739;Q9BYJ9;Q9Y5A9	YTHDF3;YTHDF1;YTHDF2	YTH domain-containing family protein 3;YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	13.459	12.894	2;3	3.1741E-05	10489	160511_QHF_FH_JSI9i_2	101.64	97.287			1.0484	1.1486	6.6025	8	0	Median	1.4101	1.2319	1.3669	2	0	Median	0.90069	1.1024	10.178	2	0	Median	1.1414	1.1486	3.431	2	0	Median	0.96624	1.0881	0.92767	2	0	Median	564360000	277450000	286910000	110870000	44866000	65999000	106590000	61707000	44880000	189990000	92566000	97423000	156920000	78308000	78610000	48923	3291;4548;5654	46066	294890;294891;294892;294893;294894;294895;294896;294897	395860;395861;395862;395863;395864	395862			4	
SYSFDEIRK	1	Unmodified	1143.556	0.55603812	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	4	3	3	35.92	35.216	2;3	0.00019444	29718	160511_QHF_FH_JSI12i_3	85.731	57.988			0.94883	0.89566	30.063	12	4	Median	1.0556	0.90661	20.861	2	1	Median	0.83975	1.0416	32.177	4	3	Median	0.98693	0.94185	34.493	3	0	Median	0.83213	0.85173	36.305	3	0	Median	1689100000	844670000	844480000	159310000	76862000	82448000	326420000	169450000	156970000	676910000	365470000	311440000	526510000	232890000	293620000	48924	1566	46067	294898;294899;294900;294901;294902;294903;294904;294905;294906;294907;294908;294909	395865;395866;395867;395868;395869;395870;395871;395872;395873;395874;395875;395876;395877;395878;395879;395880;395881;395882	395881			18	
SYSFIAR	0	Unmodified	842.42865	0.42865276	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	35.96	35.814	2	0.020271	29975	160511_QHF_FH_JSI10i_3	52.636	27.638			0.76724	0.77097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76724	0.77097	NaN	1	1	Median	87898000	52561000	35336000	0	0	0	0	0	0	0	0	0	87898000	52561000	35336000	48925	3432	46068	294910;294911	395883;395884	395883			2	
SYSGENTASAIAR	0	Unmodified	1325.6212	0.62115757	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.5	6.5	1						1					1	1	27.704	22.881	2	0.0036571	20408	160511_QHF_FH_JSI12i_1	56.225	16.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48926	2993	46069	294912;294913	395885;395886	395885			2	
SYSKLLCGLLAER	1	Acetyl (K)	1550.8127	0.81266351	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		86.102	78.606	2	2.4074E-16	44576	160513_QHF_FH_JSI10Kac_6	140.08	119.88			0.79713	0.84633	90.466	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3593	1.6046	NaN	1	0	Median	0.46745	0.4464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	378250000	191260000	186990000	0	0	0	134190000	47106000	87084000	244060000	144160000	99904000	0	0	0	48927	1048	46070	294914;294915	395887;395888	395888	879		2	
SYSMIVNNLLK	1	Oxidation (M)	1296.6748	0.67477304	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	3	1	2	74.23	72.18	2	9.4198E-13	60166	160511_QHF_FH_JSI9i_3	144.77	126.1			0.96941	0.98074	23.046	9	4	Median	1.0781	0.85685	13.628	3	2	Median	0.68826	0.78809	17.362	3	2	Median	1.0764	1.0173	NaN	1	0	Median	1.1818	1.2549	32.831	2	0	Median	451580000	236630000	214960000	158750000	76215000	82532000	143970000	80243000	63728000	60403000	31214000	29189000	88461000	48952000	39509000	48928	4837	46071	294916;294917;294918;294919;294920;294921;294922;294923;294924	395889;395890;395891;395892;395893;395894;395895;395896;395897;395898;395899	395895		2539	10	
SYSMIVNNLLK	1	Unmodified	1280.6799	0.67985842	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.57	1	4	4						5	5	4	2	3	80.447	77.019	2	5.4038E-24	38241	160513_QHF_FH_JSI12Kac_6	183.67	158.05			0.88467	0.88045	39.597	14	7	Median	0.94531	0.76379	45.171	5	4	Median	0.63001	0.74582	35.723	4	1	Median	0.99698	0.94123	10.647	2	0	Median	0.85067	0.952	47.825	3	2	Median	5289700000	2793500000	2496200000	1400900000	684270000	716630000	1406800000	887830000	518990000	1464900000	724510000	740420000	1017000000	496890000	520150000	48929	4837	46071	294925;294926;294927;294928;294929;294930;294931;294932;294933;294934;294935;294936;294937;294938	395900;395901;395902;395903;395904;395905;395906;395907;395908;395909;395910;395911;395912;395913;395914;395915;395916;395917;395918;395919;395920;395921;395922;395923	395921			24	
SYSMIVNNLLKPISVEGSSK	2	Unmodified	2165.1402	0.14020524	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	92.695	92.429	3	7.9588E-19	77388	160511_QHF_FH_JSI10i_3	161.65	152.95			0.83082	0.85378	36.937	4	2	Median	NaN	NaN	NaN	0	0	Median	0.77929	0.8965	NaN	1	0	Median	0.88575	0.8131	NaN	1	0	Median	0.83062	0.83789	63.575	2	2	Median	518800000	259130000	259660000	0	0	0	113040000	64188000	48854000	353250000	164270000	188990000	52503000	30679000	21823000	48930	4837	46072	294939;294940;294941;294942	395924;395925;395926;395927;395928;395929;395930	395927			7	
SYSMIVNNLLKPISVEGSSK	2	Oxidation (M)	2181.1351	0.13511986	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			3							1	2			90.407	89.282	3	0.00083293	74516	160511_QHF_FH_JSI10i_3	52.814	39.187			0.8462	0.70838	NaN	1	1	Median	0.8462	0.70838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14780000	7129300	7650600	14780000	7129300	7650600	0	0	0	0	0	0	0	0	0	48931	4837	46072	294943;294944;294945	395931;395932;395933	395932		2539	3	
SYSPSDLVELVAR	0	Unmodified	1434.7355	0.73545904	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			91.475	91.009	2	0.0029916	80223	160511_QHF_FH_JSI9i_2	57.348	34.608			0.94845	1.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94845	1.1595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20229000	9080000	11149000	0	0	0	20229000	9080000	11149000	0	0	0	0	0	0	48932	4815	46073	294946;294947	395934;395935	395934			2	
SYSPTLFAQTVR	0	Unmodified	1368.7038	0.70376498	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				61.578	60.619	2	0.003536	53344	160511_QHF_FH_JSI9i_2	65.5	57.575			2.4217	2.0619	NaN	1	1	Median	2.4217	2.0619	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24835000	8379800	16455000	24835000	8379800	16455000	0	0	0	0	0	0	0	0	0	48933	2497	46074	294948	395936	395936			1	
SYSPYDMLESIR	0	Unmodified	1459.6653	0.66533057	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.853	4	3	4							3	2	3	3	84.761	84.149	2	3.3518E-05	76572	160511_QHF_FH_JSI10i_1	113.44	101.21			0.97926	0.96003	13.408	11	5	Median	0.90555	0.77011	18.182	3	2	Plateau	0.77054	0.91158	8.3368	2	1	Median	0.86278	0.88177	9.3063	3	1	Plateau	0.83566	0.92398	15.182	3	1	Plateau	1954600000	1052400000	902210000	385110000	192920000	192190000	150900000	84605000	66295000	863470000	466680000	396790000	555130000	308200000	246940000	48934	870	46075	294949;294950;294951;294952;294953;294954;294955;294956;294957;294958;294959	395937;395938;395939;395940;395941;395942;395943;395944;395945;395946;395947;395948;395949;395950	395943			14	
SYSPYDMLESIRK	1	Oxidation (M)	1603.7552	0.75520821	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.47	2.91		4	12					1		1	4	5	7	53.121	52.005	2;3	1.1683E-05	46154	160511_QHF_FH_JSI11i_3	116.51	110.61			1.0523	1.0414	22.478	17	8	Median	1.0296	0.87547	NaN	1	0	Median	1.0645	1.2733	24.414	4	2	Median	1.1269	1.072	17.018	5	2	Median	0.92222	0.95066	24.037	7	4	Median	5783200000	2761800000	3021500000	8668000	4244000	4424000	509870000	264640000	245230000	1478200000	657520000	820650000	3786500000	1835300000	1951100000	48935	870	46076	294960;294961;294962;294963;294964;294965;294966;294967;294968;294969;294970;294971;294972;294973;294974;294975;294976	395951;395952;395953;395954;395955;395956;395957;395958;395959;395960;395961;395962;395963;395964;395965;395966;395967;395968;395969;395970;395971;395972;395973	395953		412	23	
SYSPYDMLESIRK	1	Unmodified	1587.7603	0.76029359	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.16	4.51	2	11	15						4	6	9	9	8	75.578	73.89	2;3	4.4621E-67	66330	160511_QHF_FH_JSI11i_3	206.69	196.06			0.99684	0.99613	17.252	31	7	Median	1.1703	0.97084	5.2847	6	0	Median	0.88463	1.0123	22.588	9	3	Median	1.064	1.0488	20.167	8	1	Median	0.93576	0.9632	12.603	8	3	Median	60967000000	28783000000	32183000000	4813300000	2241100000	2572200000	13149000000	6307700000	6840900000	18385000000	7951800000	10433000000	24620000000	12283000000	12337000000	48936	870	46076	294977;294978;294979;294980;294981;294982;294983;294984;294985;294986;294987;294988;294989;294990;294991;294992;294993;294994;294995;294996;294997;294998;294999;295000;295001;295002;295003;295004;295005;295006;295007;295008	395974;395975;395976;395977;395978;395979;395980;395981;395982;395983;395984;395985;395986;395987;395988;395989;395990;395991;395992;395993;395994;395995;395996;395997;395998;395999;396000;396001;396002;396003;396004;396005;396006;396007;396008;396009;396010;396011;396012;396013;396014;396015;396016;396017;396018;396019;396020;396021;396022;396023;396024;396025;396026;396027;396028;396029;396030;396031;396032;396033;396034;396035;396036;396037;396038;396039;396040;396041;396042;396043;396044;396045;396046;396047;396048;396049;396050;396051;396052;396053;396054;396055;396056;396057;396058;396059;396060;396061	395977			87	
SYSQQLFLALK	1	Unmodified	1296.7078	0.70778773	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	3	1	1	76.113	74.565	2	7.3026E-08	39424	160513_QHF_FH_JSI10Kac_6	118.4	108.45			0.83366	0.88368	32.966	6	1	Median	0.70657	0.58297	NaN	1	0	Median	0.69427	0.87861	43.481	3	1	Median	0.9838	0.88877	NaN	1	0	Median	0.9836	0.98821	NaN	1	0	Median	283890000	163680000	120200000	34905000	22134000	12772000	112750000	68028000	44723000	48540000	26270000	22271000	87690000	47254000	40436000	48937	2432	46077	295009;295010;295011;295012;295013;295014	396062;396063;396064;396065;396066;396067;396068;396069;396070;396071	396071			9	
SYSQSILLDLTDNR	0	Unmodified	1623.8104	0.8104149	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.309	79.309	2	8.2139E-14	70853	160511_QHF_FH_JSI11i_3	129.34	98.157			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48938	3173	46078	295015	396072	396072			1	
SYSSGGEDGYVR	0	Unmodified	1275.5368	0.53675924	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.42	6.1	4	2				3	3			2	4	3	3	21.678	17.702	2	3.1694E-07	15525	160511_QHF_FH_JSI12i_1	127.76	122.8			1.0035	1.0059	16.775	11	2	Median	1.2303	1.0551	45.616	2	2	Median	0.87141	1.0488	8.4531	4	0	Median	1.0196	1.0059	4.57	3	0	Median	0.96193	1.0435	21.619	2	0	Median	1571400000	835670000	735730000	359580000	199110000	160470000	438370000	245280000	193100000	415150000	202180000	212980000	358290000	189110000	169190000	48939	2391	46079	295016;295017;295018;295019;295020;295021;295022;295023;295024;295025;295026;295027	396073;396074;396075;396076;396077;396078;396079;396080;396081;396082;396083;396084;396085;396086;396087;396088;396089;396090;396091	396076			19	
SYSVGASGSSSR	0	Unmodified	1143.5156	0.51562986	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.03	4	4					3	1		3	3	3	3	12.617	9.4269	2	2.0681E-08	8130	160511_QHF_FH_JSI11i_2	140.49	135			1.0783	1.0796	13.303	12	0	Median	1.1892	1.0233	8.2203	3	0	Median	0.7191	0.84451	13.539	3	0	Median	1.1982	1.1803	4.0205	3	0	Plateau	1.0454	1.1066	1.6277	3	0	Median	553450000	265270000	288180000	110920000	53752000	57170000	157140000	83522000	73619000	154780000	64732000	90049000	130610000	63263000	67344000	48940	3553	46080	295028;295029;295030;295031;295032;295033;295034;295035;295036;295037;295038;295039	396092;396093;396094;396095;396096;396097;396098;396099;396100;396101;396102;396103;396104	396101			13	
SYTAADATLK	1	Unmodified	1039.5186	0.51858998	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.66	2					1						1	2	26.619	26.25	2	8.369E-05	23498	160511_QHF_FH_JSI12i_1	101.65	54.579			0.72338	0.72285	73.454	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2538	1.2151	NaN	1	1	Median	0.41734	0.43	NaN	1	1	Median	140720000	79865000	60860000	0	0	0	0	0	0	60212000	28708000	31505000	80512000	51157000	29356000	48941	5	46081	295040;295041;295042	396105;396106;396107	396106			3	
SYTIAVASLGK	1	Unmodified	1108.6128	0.61282471	847	P06280	GLA	Alpha-galactosidase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	5.1		2					2	4	3	2	3	4	2	65.771	57.308	2	5.138E-11	30466	160513_QHF_FH_JSI9Kac_6	135.86	108.12			1.0874	1.0678	33.466	11	1	Median	1.2153	1.0167	21.726	2	0	Median	0.79652	0.95344	24.813	3	0	Median	1.163	1.1445	40.847	4	1	Median	0.83918	0.92795	65.992	2	0	Median	270530000	144950000	125580000	34030000	16378000	17652000	49808000	25353000	24455000	135750000	72985000	62765000	50941000	30231000	20709000	48942	847	46082	295043;295044;295045;295046;295047;295048;295049;295050;295051;295052;295053	396108;396109;396110;396111;396112;396113;396114;396115;396116;396117;396118;396119;396120;396121;396122;396123	396122			16	
SYTLNAVSFHFLGEQK	1	Unmodified	1839.9155	0.91554867	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.8	5.63			2						6	2	4	1	1	80.787	74.882	2;3	2.2287E-144	40586	160513_QHF_FH_JSI10Kac_6	316.1	284.35			1.029	1.08	16.779	7	3	Median	1.2115	1.0287	21.663	2	0	Median	0.77201	0.92308	18.682	3	2	Median	1.2945	1.2344	NaN	1	1	Median	1.029	1.08	NaN	1	0	Median	1512200000	737820000	774340000	373700000	161120000	212580000	689090000	392120000	296970000	240970000	85232000	155730000	208400000	99344000	109050000	48943	1307	46083	295054;295055;295056;295057;295058;295059;295060;295061	396124;396125;396126;396127;396128;396129;396130;396131;396132;396133	396132			10	
SYTLVVAK	1	Unmodified	879.50657	0.50656873	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3		1	2	2	1	49.156	38.737	2	0.00073487	21823	160513_QHF_FH_JSI10Kac_4	97.798	49.95			0.19288	0.22108	93.815	4	4	Median	0.043409	0.038568	NaN	1	1	Median	0.20508	0.24543	NaN	1	1	Median	0.30155	0.29899	NaN	1	1	Median	0.1814	0.19915	NaN	1	1	Median	445110000	416350000	28762000	182960000	177080000	5885400	131520000	122960000	8560900	88901000	76850000	12051000	41728000	39463000	2264900	48944	339	46084	295062;295063;295064;295065;295066;295067	396134;396135;396136;396137;396138;396139	396135			6	
SYTMDDAWK	1	Unmodified	1115.4594	0.45936054	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	44.308	43.828	2	5.5641E-05	39824	160511_QHF_FH_JSI12i_1	97.635	93.279			1.6363	1.6119	4.8563	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.381	1.6119	NaN	1	0	Median	1.5899	1.5629	NaN	1	0	Median	1.6448	1.719	NaN	1	0	Median	345210000	129130000	216080000	0	0	0	106510000	39648000	66858000	118370000	38645000	79730000	120330000	50836000	69490000	48945	3799	46085	295068;295069;295070	396140;396141	396140			2	
SYTPGVGGDPAQLAQR	0	Acetyl (Protein N-term)	1657.806	0.80599822	288	O15400	STX7	Syntaxin-7	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.54	59.129	2	0.0001426	52400	160511_QHF_FH_JSI9i_1	80.69	74.307			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48946	288	46086	295071;295072;295073	396142;396143;396144	396144			3	
SYTPLHAAASSGMISVVK	1	Unmodified	1817.9346	0.93456956	243	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.007	59.873	3	1.2008E-16	51621	160511_QHF_FH_JSI12i_3	139.88	129.96			0.93358	0.90953	16.728	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87035	0.80806	NaN	1	0	Median	1.0014	1.0237	NaN	1	0	Median	165880000	73696000	92186000	0	0	0	0	0	0	68327000	33998000	34329000	97556000	39699000	57857000	48947	243	46087	295074;295075	396145;396146;396147;396148;396149;396150	396150			6	
SYTSDLQK	1	Unmodified	940.45018	0.45017606	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	16.758	16.285	2	0.0027255	13568	160511_QHF_FH_JSI9i_1	77.923	39.789			0.71355	0.78731	14.878	4	1	Linear	0.97402	0.80524	NaN	1	0	Median	0.64535	0.76978	NaN	1	0	Median	0.77465	0.75303	NaN	1	0	Median	0.99162	1.039	NaN	1	1	Median	665350000	336390000	328960000	153100000	81830000	71268000	187550000	107830000	79720000	168680000	77895000	90789000	156020000	68840000	87183000	48948	3799	46088	295076;295077;295078;295079	396151;396152	396152			2	
SYTSGPGSR	0	Unmodified	910.41446	0.41445926	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.12	2	4	4				3	4		4	5	4	4	7.7406	3.5935	2	1.754E-06	4633	160511_QHF_FH_JSI11i_2	130.27	111.54		+	0.97022	1.012	11.06	16	0	Median	1.1501	0.94832	14.083	4	0	Median	0.83337	1.0621	5.3174	4	0	Linear	1.0439	1.0467	8.0503	4	0	Median	0.97022	1.0695	10.746	4	0	Median	6959600000	3549100000	3410500000	1859400000	931150000	928260000	1187200000	596790000	590360000	2112900000	1058800000	1054000000	1800200000	962320000	837840000	48949	51	46089	295080;295081;295082;295083;295084;295085;295086;295087;295088;295089;295090;295091;295092;295093;295094;295095;295096	396153;396154;396155;396156;396157;396158;396159;396160;396161;396162;396163;396164;396165;396166;396167;396168;396169;396170;396171;396172;396173;396174;396175;396176;396177;396178	396169			26	
SYTTPKK	2	Unmodified	823.44397	0.44396847	2042	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	2	2	3	5.9455	5.7069	2;3	0.010899	3602	160511_QHF_FH_JSI11i_3	73.616	44.24			1.0986	1.0786	29.914	8	0	Median	2.0269	1.6387	NaN	1	0	Median	1.1664	1.3459	4.763	2	0	Median	1.0279	0.96522	13.912	2	0	Median	1.0506	1.0464	31.533	3	0	Median	1872200000	900170000	972010000	54928000	16880000	38048000	164610000	87968000	76645000	439590000	198380000	241210000	1213100000	596940000	616110000	48950	2042	46090	295097;295098;295099;295100;295101;295102;295103;295104	396179;396180;396181;396182;396183;396184;396185	396180			7	
SYTVGVMMMHR	0	Oxidation (M)	1326.5883	0.588283	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	2.14			1					2	33	8	17	5	6	49.053	40.157	2;3	3.1139E-72	20961	160513_QHF_FH_JSI10Kac_6	237.61	197.26			1.0958	1.084	15.925	32	4	Median	1.2549	1.079	6.4281	7	0	Median	0.87824	1.0345	16.479	15	3	Median	1.234	1.2171	10.733	5	0	Median	1.1552	1.2366	15.344	5	1	Median	4694200000	2300200000	2393900000	1180000000	505680000	674290000	2567800000	1360200000	1207500000	456350000	200330000	256020000	490070000	233990000	256090000	48951	1706	46091	295105;295106;295107;295108;295109;295110;295111;295112;295113;295114;295115;295116;295117;295118;295119;295120;295121;295122;295123;295124;295125;295126;295127;295128;295129;295130;295131;295132;295133;295134;295135;295136;295137;295138;295139;295140	396186;396187;396188;396189;396190;396191;396192;396193;396194;396195;396196;396197;396198;396199;396200;396201;396202;396203;396204;396205;396206;396207;396208;396209;396210;396211;396212;396213;396214;396215;396216;396217;396218;396219;396220;396221;396222;396223;396224;396225;396226;396227;396228;396229;396230;396231;396232	396213		1383;1384;1385	43	
SYTVGVMMMHR	0	Unmodified	1310.5934	0.59336837	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.07			4					2	15	7	10	2	2	56.852	49.168	2;3	2.2186E-124	26710	160513_QHF_FH_JSI10Kac_6	278.86	193.65			1.0683	1.0899	18.007	20	5	Median	1.1954	1.0079	22.003	7	1	Median	0.91007	1.0847	18.09	9	4	Median	1.169	1.1012	0.77737	2	0	Median	1.1185	1.1811	1.6205	2	0	Median	7874400000	3794400000	4080000000	1518200000	674820000	843380000	4418700000	2226600000	2192100000	1089300000	506330000	582990000	848180000	386660000	461510000	48952	1706	46091	295141;295142;295143;295144;295145;295146;295147;295148;295149;295150;295151;295152;295153;295154;295155;295156;295157;295158;295159;295160;295161	396233;396234;396235;396236;396237;396238;396239;396240;396241;396242;396243;396244;396245;396246;396247;396248;396249;396250;396251;396252;396253;396254;396255;396256;396257;396258;396259;396260	396253			28	
SYTVGVMMMHR	0	3 Oxidation (M)	1358.5781	0.57811224	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	3	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.651							2	9	11	4	7	2	9	25.211	16.874	2;3	2.6965E-10	9427	160513_QHF_FH_JSI12Kac_6	128.36	119.83			1.0726	1.0534	14.746	20	4	Median	1.2163	1.0415	1.7426	4	0	Median	0.81483	0.97785	14.118	6	2	Median	1.2536	1.2795	11.046	2	0	Median	1.0726	1.1599	10.579	8	2	Median	401110000	195470000	205650000	129980000	58943000	71038000	106970000	56960000	50006000	4763200	2867900	1895400	159400000	76694000	82710000	48953	1706	46091	295162;295163;295164;295165;295166;295167;295168;295169;295170;295171;295172;295173;295174;295175;295176;295177;295178;295179;295180;295181;295182;295183	396261;396262;396263;396264;396265;396266;396267;396268;396269;396270;396271;396272;396273;396274;396275;396276;396277;396278;396279;396280;396281;396282;396283;396284;396285;396286;396287;396288;396289;396290;396291;396292;396293;396294	396283		1383;1384;1385	34	
SYTVGVMMMHR	0	2 Oxidation (M)	1342.5832	0.58319762	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.559							2	13	33	14	13	9	12	36.615	27.4	2;3	2.6515E-12	14982	160513_QHF_FH_JSI9Kac_6	145.17	136.95			1.173	1.0574	14.795	48	2	Median	1.2167	1.0337	14.396	14	0	Median	0.84996	1.01	16.179	13	0	Median	1.2595	1.2239	11.377	9	1	Median	1.1443	1.2343	8.2902	12	1	Median	2173500000	1019500000	1153900000	838430000	359510000	478930000	767360000	402470000	364880000	181790000	80524000	101270000	385900000	177030000	208870000	48954	1706	46091	295184;295185;295186;295187;295188;295189;295190;295191;295192;295193;295194;295195;295196;295197;295198;295199;295200;295201;295202;295203;295204;295205;295206;295207;295208;295209;295210;295211;295212;295213;295214;295215;295216;295217;295218;295219;295220;295221;295222;295223;295224;295225;295226;295227;295228;295229;295230;295231	396295;396296;396297;396298;396299;396300;396301;396302;396303;396304;396305;396306;396307;396308;396309;396310;396311;396312;396313;396314;396315;396316;396317;396318;396319;396320;396321;396322;396323;396324;396325;396326;396327;396328;396329;396330;396331;396332;396333;396334;396335;396336;396337;396338;396339;396340;396341;396342;396343;396344;396345;396346;396347;396348;396349;396350;396351;396352	396322		1383;1384;1385	57	
SYVAWDR	0	Unmodified	895.41882	0.41881635	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	33.914	32.984	2	0.015017	28922	160511_QHF_FH_JSI10i_2	65.313	30.207			0.81111	0.84224	7.891	4	0	Median	1.0924	0.91984	NaN	1	0	Median	0.62755	0.77615	NaN	1	0	Median	0.83158	0.80431	NaN	1	0	Median	0.79114	0.88195	NaN	1	0	Median	464130000	244260000	219870000	93171000	42396000	50775000	113190000	61891000	51303000	150710000	72287000	78422000	107050000	67684000	39371000	48955	2094	46092	295232;295233;295234;295235	396353;396354	396354			2	
SYVAWDREK	1	Unmodified	1152.5564	0.55637247	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	3	2	1	27.002	26.234	2;3	3.112E-07	21740	160511_QHF_FH_JSI10i_3	135.71	122.67			1.2702	1.3097	78.411	6	0	Median	1.6132	1.3772	NaN	1	0	Median	0.9148	1.0742	8.3666	3	0	Plateau	1.5579	1.4771	NaN	1	0	Median	7.9765	8.2559	NaN	1	0	Median	894140000	357590000	536550000	55456000	22609000	32847000	331150000	159040000	172110000	323360000	154360000	169000000	184170000	21585000	162590000	48956	2094	46093	295236;295237;295238;295239;295240;295241;295242	396355;396356;396357;396358;396359;396360;396361;396362;396363;396364	396361			10	
SYVDLLK	1	Unmodified	836.46437	0.46436956	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	52.944	52.133	2	0.0091282	47457	160511_QHF_FH_JSI12i_1	69.998	33.813			1.0603	1.109	10.593	4	0	Median	1.0772	0.92652	NaN	1	0	Median	0.91027	1.0717	NaN	1	0	Median	1.1884	1.1477	NaN	1	0	Median	1.0435	1.1708	NaN	1	0	Median	391160000	186720000	204440000	121530000	66588000	54945000	56177000	23960000	32217000	52078000	20085000	31993000	161380000	76089000	85286000	48957	4518	46094	295243;295244;295245;295246;295247	396365;396366;396367;396368;396369;396370;396371	396368			7	
SYVDPSTDER	0	Unmodified	1167.5044	0.50439648	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	20.916	18.123	2	0.001367	15475	160511_QHF_FH_JSI9i_1	66.299	45.674			1.2232	1.195	21.713	6	1	Median	1.7494	1.4671	NaN	1	0	Median	0.7152	0.83762	NaN	1	0	Median	1.2426	1.195	4.2304	2	0	Median	1.0276	1.0802	25.659	2	1	Median	303780000	154640000	149140000	63847000	20258000	43589000	87973000	57555000	30418000	91761000	44490000	47271000	60199000	32339000	27860000	48958	2636	46095	295248;295249;295250;295251;295252;295253	396372;396373;396374;396375;396376	396375			5	
SYVDPSTDERLSYTQLLR	0	Unmodified	2142.0593	0.059312378	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			72.074	71.289	3	0.018973	63378	160511_QHF_FH_JSI10i_2	37.583	28.168			1.639	2.0149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.639	2.0149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31317000	11215000	20102000	0	0	0	31317000	11215000	20102000	0	0	0	0	0	0	48959	2636	46096	295254	396377	396377			1	
SYVHSALK	1	Unmodified	903.48142	0.48141661	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	11.865	11.64	2	0.0033437	9333	160511_QHF_FH_JSI10i_3	73.26	60.733			0.87574	0.97236	16.547	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87574	0.97236	NaN	1	0	Median	1.2544	1.1833	NaN	1	0	Median	0.83731	0.85168	NaN	1	0	Median	141360000	66236000	75122000	0	0	0	20405000	11805000	8600000	57657000	18792000	38865000	63296000	35639000	27656000	48960	1501	46097	295255;295256;295257	396378;396379;396380;396381	396380			4	
SYVITGSWNPK	1	Unmodified	1250.6295	0.62953741	5599	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	64.45	54.561	2	0.0011179	28596	160513_QHF_FH_JSI12Kac_6	84.17	45.022			0.68601	0.72095	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68601	0.72095	NaN	1	1	Median	6968400	4165700	2802600	0	0	0	0	0	0	0	0	0	6968400	4165700	2802600	48961	5599	46098	295258	396382	396382			1	
SYVSEKDVTSAK	2	Acetyl (K)	1354.6616	0.6616254	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	40.747	31.869	2	0.00038594	18175	160513_QHF_FH_JSI11Kac_3	88.441	71.005			0.90987	0.98004	29.07	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90987	1.0577	NaN	1	0	Median	0.64129	0.61806	NaN	1	0	Median	0.92725	0.98004	NaN	1	0	Median	24927000	14492000	10436000	0	0	0	7629100	3732400	3896700	7242400	5188900	2053600	10056000	5570500	4485300	48962	1544	46099	295259;295260;295261;295262	396383;396384;396385;396386;396387;396388;396389	396383	1560		7	
SYVSSLLAHYLFQGGLR	0	Unmodified	1910.005	0.0050323835	2908	Q8N2E6;Q5JU69	TOR2A	Prosalusin;Salusin-alpha;Salusin-beta;Torsin-2A	yes	no	0	0	0	0		By MS/MS			16	0									1		1			91.239	85.519	2	2.0776E-56	48738	160513_QHF_FH_JSI10Kac_6	202.44	173.98			0.81752	0.97403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81752	0.97403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76794000	44734000	32060000	0	0	0	76794000	44734000	32060000	0	0	0	0	0	0	48963	2908	46100	295263	396390	396390			1	
SYVSTMILEVVK	1	Unmodified	1367.737	0.73703895	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		9	7		1							1	1		1		87.722	78.393	2	0.00092773	43728	160513_QHF_FH_JSI11Kac_6	84.198	74.193			0.22025	0.20507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22025	0.20507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62207000	51508000	10700000	0	0	0	0	0	0	62207000	51508000	10700000	0	0	0	48964	5034	46101	295264;295265	396391;396392	396391			2	
SYVTTSTR	0	Unmodified	913.45051	0.45051041	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			2	4	2	1	11.487	9.7301	2	0.00033075	8003	160511_QHF_FH_JSI12i_2	111.82	81.147			1.0026	1.121	14.088	7	2	Median	1.0343	0.88243	NaN	1	1	Median	1.0097	1.1727	7.4343	3	1	Median	0.95714	0.95354	0.30474	2	0	Median	1.0026	1.121	NaN	1	0	Median	1203300000	635070000	568200000	155930000	76640000	79294000	486390000	249220000	237160000	441940000	250570000	191370000	119010000	58638000	60369000	48965	913	46102	295266;295267;295268;295269;295270;295271;295272;295273;295274	396393;396394;396395;396396;396397;396398;396399;396400;396401;396402;396403;396404	396396			12	
SYWLDNFAK	1	Unmodified	1142.5397	0.53965977	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	3	2	2	71.598	70.851	2	4.4485E-06	61168	160511_QHF_FH_JSI12i_2	119.27	92.02			1.0911	1.1298	9.7827	7	2	Median	NaN	NaN	NaN	0	0	Median	0.96664	1.1319	10.318	3	2	Median	1.1426	1.1155	1.5807	2	0	Median	0.99347	1.0643	13.274	2	0	Median	1330900000	660890000	670020000	0	0	0	395380000	201280000	194110000	463580000	224570000	239010000	471940000	235040000	236900000	48966	3071	46103	295275;295276;295277;295278;295279;295280;295281;295282	396405;396406;396407;396408;396409;396410;396411;396412;396413;396414;396415;396416	396408			12	
SYYELYMAISDELHYLEVYLTDEFAK	1	Unmodified	3204.4889	0.48893592	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			104.44	98.716	3;4	1.6637E-111	58420	160513_QHF_FH_JSI10Kac_6	240.41	229.49			0.85349	0.98986	34.488	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85349	0.98986	34.488	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	258780000	149290000	109480000	0	0	0	258780000	149290000	109480000	0	0	0	0	0	0	48967	4212	46104	295283;295284	396417;396418;396419;396420	396420			4	
SYYETSK	1	Unmodified	876.38651	0.38651317	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.5	6.5	1						1					1	1	12.226	8.2238	2	0.04199	5853	160513_QHF_FH_JSI11Kac_4	56.011	56.011			1.2437	1.2768	29.628	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0462	1.0355	NaN	1	0	Median	1.4785	1.5744	NaN	1	1	Median	346710000	110760000	235950000	0	0	0	0	0	0	8849100	5106400	3742600	337860000	105650000	232210000	48968	5436	46105	295285;295286	396421;396422	396422			2	
SYYETSKMK	2	Acetyl (K)	1177.5325	0.53252548	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		36.737	27.289	2	0.012653	16744	160513_QHF_FH_JSI11Kac_4	60.019	40.232			0.2767	0.27266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2767	0.27266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4666800	3563000	1103700	0	0	0	0	0	0	4666800	3563000	1103700	0	0	0	48969	5436	46106	295287	396423	396423	3413		1	
SYYFPVK	1	Unmodified	902.4538	0.45380487	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.79	6.67	1	4	2					4	3	3	3	3	5	54.503	48.972	2	0.012734	42856	160511_QHF_FH_JSI9i_2	73.039	54.308			0.94256	0.94357	39.362	14	1	Median	1.0258	0.8709	12.77	3	0	Plateau	0.83499	1.0154	26.103	3	0	Median	0.97174	0.98781	10.676	3	0	Median	0.82759	0.88757	63.027	5	1	Median	1481500000	734930000	746540000	303440000	135590000	167850000	267420000	137960000	129460000	461150000	185980000	275170000	449460000	275400000	174060000	48970	2665	46107	295288;295289;295290;295291;295292;295293;295294;295295;295296;295297;295298;295299;295300;295301	396424;396425;396426;396427;396428;396429;396430;396431;396432;396433;396434;396435;396436;396437;396438;396439;396440;396441;396442	396433			19	
SYYKPDSPEYK	2	Unmodified	1375.6296	0.62959699	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	22.937	22.928	3	0.0067143	18951	160511_QHF_FH_JSI12i_3	45.915	38.305			1.193	1.1543	5.5501	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.258	1.2005	NaN	1	0	Median	1.1313	1.1099	NaN	1	0	Median	48770000	23602000	25168000	0	0	0	0	0	0	18157000	8664100	9492400	30614000	14938000	15675000	48971	3318	46108	295302;295303	396443;396444	396444			2	
SYYQSSVQYLYR	0	Unmodified	1555.7307	0.73070802	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.71		4						2	4	3	3	2	2	60.528	54.321	2	2.0568E-195	29824	160513_QHF_FH_JSI10Kac_6	325.62	325.62			1.0736	1.1563	11.083	10	0	Median	1.354	1.1658	16.783	3	0	Median	0.98838	1.1895	0.47384	3	0	Median	1.1128	1.0922	1.3098	2	0	Median	0.95315	1.036	14.366	2	0	Median	435550000	206870000	228680000	91418000	35225000	56192000	172770000	93036000	79738000	106560000	42692000	63865000	64802000	35919000	28882000	48972	3382	46109	295304;295305;295306;295307;295308;295309;295310;295311;295312;295313	396445;396446;396447;396448;396449;396450;396451;396452;396453;396454;396455;396456;396457;396458;396459;396460;396461;396462	396462			18	
SYYTVHLLQLENINSGETR	0	Unmodified	2236.1124	0.11241058	1125	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	78.136	69.776	3	2.8697E-157	38871	160513_QHF_FH_JSI10Kac_6	273.46	247.92			0.98914	1.0497	14.311	4	0	Median	1.0025	0.83943	NaN	1	0	Median	0.97601	1.1783	NaN	1	0	Median	1.1287	1.0737	NaN	1	0	Median	0.97292	1.0262	NaN	1	0	Median	514270000	256960000	257310000	131150000	61741000	69409000	281050000	147440000	133620000	49339000	23190000	26149000	52727000	24593000	28134000	48973	1125	46110	295314;295315;295316;295317	396463;396464;396465;396466;396467	396467			5	
TAAAAAEHSQR	0	Unmodified	1111.537	0.53703401	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.34		8	3				3	8	3	6	6	6	7	4.7874	-0.28883	2;3	2.7692E-38	2187	160511_QHF_FH_JSI9i_2	208.63	199.86			0.87128	0.9195	21.839	25	0	Median	1.2418	1.0676	17.462	6	0	Median	0.70729	0.85026	21.721	6	0	Median	1.0314	0.96777	24.332	6	0	Plateau	0.73984	0.78708	8.9045	7	0	Median	5256100000	2870200000	2386000000	985420000	496760000	488660000	1082200000	634090000	448110000	1439500000	697910000	741630000	1749000000	1041400000	707550000	48974	313	46111	295318;295319;295320;295321;295322;295323;295324;295325;295326;295327;295328;295329;295330;295331;295332;295333;295334;295335;295336;295337;295338;295339;295340;295341;295342	396468;396469;396470;396471;396472;396473;396474;396475;396476;396477;396478;396479;396480;396481;396482;396483;396484;396485;396486;396487;396488;396489;396490;396491;396492;396493;396494;396495;396496;396497;396498;396499;396500;396501;396502;396503;396504	396479			36	
TAAAAAEHSQRELDTVTLEDIK	1	Unmodified	2368.187	0.18703209	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	51.859	51.271	3	0.00014772	43822	160511_QHF_FH_JSI12i_3	53.625	37.131			0.80972	0.90496	7.4646	2	1	Median	NaN	NaN	NaN	0	0	Median	0.79155	0.954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8283	0.85843	NaN	1	1	Median	67990000	36486000	31505000	0	0	0	42998000	21331000	21667000	0	0	0	24992000	15155000	9837300	48975	313	46112	295343;295344;295345	396505;396506;396507	396506			3	
TAAAASEK	1	Unmodified	747.37628	0.37628284	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	0.56262	0.25874	2	0.0061634	315	160511_QHF_FH_JSI12i_1	63.419	28.595			1.1953	1.194	148.17	5	2	Median	1.1348	0.90891	NaN	1	0	Median	26.582	30.466	NaN	1	0	Median	1.1953	1.1476	NaN	1	1	Median	1.1925	1.2343	4.6947	2	1	Median	164200000	62660000	101540000	11974000	6166000	5808500	29555000	1529200	28026000	33188000	15768000	17420000	89482000	39197000	50285000	48976	5454	46113	295346;295347;295348;295349;295350	396508;396509;396510;396511	396509			4	
TAAAASEKNR	1	Acetyl (K)	1059.5309	0.530886	5454	Q9UNZ5	C19orf53	Leydig cell tumor 10 kDa protein homolog	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.433					1	3					2	1	1	7.8844	0.63178	2	0.0029029	2969	160513_QHF_FH_JSI12Kac_3	76.943	52.988			0.97753	1.0288	11.821	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88279	1.0087	16.64	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97753	1.0288	NaN	1	0	Median	25848000	11729000	14118000	0	0	0	10488000	6029500	4458300	3931000	0	3931000	11429000	5699600	5729100	48977	5454	46114	295351;295352;295353;295354	396512;396513;396514;396515;396516	396514	3430		5	
TAAALAPASLTSAR	0	Unmodified	1299.7147	0.71466402	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			2	1	2	2	49.67	45.855	2	1.0829E-07	39399	160511_QHF_FH_JSI12i_2	140.78	112.57			1.0536	0.91378	17.896	7	2	Median	1.0812	0.90222	1.4429	2	0	Median	0.74287	0.89125	NaN	1	0	Median	1.0645	1.0511	9.9821	2	1	Median	1.048	1.1486	32.349	2	1	Median	732430000	382880000	349560000	225630000	110790000	114840000	119020000	70353000	48667000	220500000	112230000	108270000	167290000	89507000	77779000	48978	5474	46115	295355;295356;295357;295358;295359;295360;295361	396517;396518;396519;396520;396521;396522;396523;396524	396517			8	
TAAANAAAGAAENAFR	0	Unmodified	1475.7117	0.71170391	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	4.9	6	3					2			2	2	4	3	46.813	44.154	2;3	1.2823E-21	38685	160511_QHF_FH_JSI9i_2	133.16	96.734			0.84506	0.89641	22.243	10	3	Median	1.1713	0.95617	NaN	1	0	Median	0.76505	0.90452	10.4	2	1	Median	0.91324	0.89127	14.402	4	1	Median	0.71758	0.76844	35.671	3	1	Median	2015200000	1173600000	841590000	125120000	64469000	60652000	272750000	138840000	133910000	822320000	413890000	408420000	795020000	556410000	238610000	48979	210	46116	295362;295363;295364;295365;295366;295367;295368;295369;295370;295371;295372	396525;396526;396527;396528;396529;396530;396531;396532;396533;396534;396535;396536	396533			11	
TAAANAAAGAAENAFRAP	0	Unmodified	1643.8016	0.80158155	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								3	3	5	2	55.649	55.032	2;3	1.727E-22	47504	160511_QHF_FH_JSI11i_2	134.88	113.33			1.3533	1.2823	19.999	10	5	Median	1.453	1.1965	2.9755	2	1	Median	1.1332	1.3456	7.7327	3	2	Median	1.535	1.4625	32.569	3	1	Median	1.3265	1.3689	16.256	2	1	Median	593010000	251170000	341840000	79559000	30365000	49194000	253830000	115710000	138130000	154540000	58731000	95809000	105080000	46370000	58708000	48980	210	46117	295373;295374;295375;295376;295377;295378;295379;295380;295381;295382;295383;295384;295385	396537;396538;396539;396540;396541;396542;396543;396544;396545;396546;396547;396548;396549	396548			11	
TAAAVAAQSGILDR	0	Unmodified	1342.7205	0.72047768	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.58	1	5	3				2			1	3	3	4	45.342	42.613	2	6.4793E-05	36533	160511_QHF_FH_JSI11i_2	117.23	101.97			1.1091	1.1557	28.942	10	3	Median	1.1581	0.99451	NaN	1	0	Median	0.97636	1.1937	12.601	3	2	Plateau	1.2193	1.2355	4.1024	2	0	Median	0.8079	0.85728	34.478	4	1	Median	459260000	227940000	231320000	77106000	35031000	42075000	148010000	77105000	70902000	81910000	33397000	48513000	152240000	82409000	69832000	48981	5743	46118	295386;295387;295388;295389;295390;295391;295392;295393;295394;295395;295396	396550;396551;396552;396553;396554;396555;396556;396557;396558;396559;396560	396556			11	
TAAEDAIR	0	Unmodified	845.4243	0.42429566	4498;4343	Q9BWF3;Q9BQ04	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	12.494	12.076	2	0.0035931	9737	160511_QHF_FH_JSI11i_1	71.379	48.36			1.6606	1.5128	17.694	4	0	Median	1.883	1.5162	NaN	1	0	Median	0.99989	1.1941	NaN	1	0	Median	1.539	1.5094	NaN	1	0	Median	1.7917	1.8401	NaN	1	0	Median	736680000	272430000	464250000	176910000	61249000	115660000	185500000	87111000	98385000	186140000	56416000	129730000	188130000	67655000	120480000	48982	4498;4343	46119	295397;295398;295399;295400	396561;396562;396563;396564	396561			4	
TAAELLQSQGSQAGGSQTLK	1	Unmodified	1974.0018	0.0017974991	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	43.418	42.773	2;3	8.568E-68	38509	160511_QHF_FH_JSI11i_1	233.78	205.92			1.0501	0.95695	6.9599	4	0	Median	1.1376	0.93715	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0501	0.99792	2.9707	2	0	Median	0.83154	0.86569	NaN	1	0	Median	360860000	158160000	202700000	56561000	22988000	33573000	0	0	0	229230000	96487000	132740000	75066000	38681000	36385000	48983	2498	46120	295401;295402;295403;295404	396565;396566;396567;396568;396569;396570;396571;396572;396573	396565			8	
TAAELLQSQGSQAGGSQTLKR	1	Unmodified	2130.1029	0.10290853	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			36.645	35.325	3	4.9744E-14	28685	160511_QHF_FH_JSI9i_3	126.22	119.86			1.6207	1.2895	43.764	3	0	Median	1.6451	1.3568	7.1904	2	0	Median	0.57898	0.63906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117980000	52895000	65087000	87754000	33770000	53985000	30227000	19125000	11102000	0	0	0	0	0	0	48984	2498	46121	295405;295406;295407	396574;396575;396576;396577;396578;396579	396577			6	
TAAENEFVVLK	1	Unmodified	1219.6449	0.64485312	71;53	CON__P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3KNV1;P08729	KRT72;KRT7	Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.68	4	2				2	1			2	3	2	2	58.331	54.512	2	2.3221E-38	47995	160511_QHF_FH_JSI9i_1	209.1	23.958		+	0.87599	0.94251	15.769	9	0	Median	0.98335	0.81886	6.7929	2	0	Median	0.86674	1.0235	10.153	3	0	Plateau	0.85781	0.82716	35.563	2	0	Median	0.88973	0.95027	1.1604	2	0	Median	3741200000	1901100000	1840100000	922810000	460950000	461860000	898040000	479620000	418420000	1163100000	610410000	552740000	757220000	350150000	407070000	48985	53;71	46122	295408;295409;295410;295411;295412;295413;295414;295415;295416	396580;396581;396582;396583;396584;396585;396586;396587	396585			7	
TAAENEFVVLKK	2	Unmodified	1347.7398	0.73981614	71;53	CON__P08729;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q3KNV1;P08729	KRT72;KRT7	Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		9	9							2	3	6	7	43.759	43.058	2;3	2.8974E-08	36790	160511_QHF_FH_JSI12i_3	136.24	7.7024		+	1.2457	1.0677	41.761	15	10	Median	1.343	1.1081	14.494	2	0	Median	1.1099	1.31	38.161	2	1	Median	1.1273	1.0677	46.509	5	5	Median	0.95045	1.0118	49.782	6	4	Median	2283200000	1070100000	1213100000	188920000	81048000	107870000	239690000	117550000	122140000	747350000	324930000	422420000	1107200000	546590000	560630000	48986	53;71	46123	295417;295418;295419;295420;295421;295422;295423;295424;295425;295426;295427;295428;295429;295430;295431;295432;295433;295434	396588;396589;396590;396591;396592;396593;396594;396595;396596;396597;396598;396599;396600;396601;396602;396603;396604;396605;396606;396607;396608;396609	396606			21	
TAAESFK	1	Unmodified	752.37047	0.37046918	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.21	4	2	1				2			3	2	2	2	11.981	9.9237	2	3.8212E-05	6510	160513_QHF_FH_JSI11Kac_4	127.84	84.844			0.8841	0.88947	17.376	9	0	Median	0.90243	0.72383	19.451	3	0	Median	0.7267	0.87644	2.0856	2	0	Median	0.86639	0.85102	29.322	2	0	Median	0.91389	0.9794	2.4038	2	0	Median	15592000000	7082500000	8509200000	4175400000	1591100000	2584300000	4371100000	2240400000	2130700000	3695300000	1726400000	1968900000	3349900000	1524600000	1825300000	48987	867	46124	295435;295436;295437;295438;295439;295440;295441;295442;295443	396610;396611;396612;396613;396614;396615;396616;396617;396618	396613			9	
TAAFALPVLER	0	Unmodified	1186.671	0.67100829	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	80.399	79.718	2	0.017107	70007	160511_QHF_FH_JSI11i_2	61.765	50.6			0.90891	0.99327	6.9904	4	0	Median	NaN	NaN	NaN	0	0	Median	0.83425	1.0096	NaN	1	0	Median	1.0581	1.0748	NaN	1	0	Median	0.90891	0.94233	5.146	2	0	Median	230050000	124410000	105640000	0	0	0	49215000	27364000	21851000	84181000	45078000	39104000	96653000	51965000	44688000	48988	4096	46125	295444;295445;295446;295447	396619;396620	396620			0	
TAAFIWPMLIHIMDQK	1	Unmodified	1913.9896	0.98958202	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	3	2	1	98.876	93.228	3	1.6646E-53	50375	160513_QHF_FH_JSI11Kac_6	193.56	169.87			0.88045	0.847	37.272	7	2	Median	1.0969	0.93239	NaN	1	0	Median	0.613	0.7104	48.991	3	2	Median	0.92779	0.87373	9.72	2	0	Median	0.92854	0.97905	NaN	1	0	Median	2735900000	1533100000	1202800000	407770000	174760000	233010000	1178200000	822770000	355420000	699250000	323160000	376090000	450730000	212440000	238290000	48989	3377	46126	295448;295449;295450;295451;295452;295453;295454	396621;396622;396623;396624;396625;396626;396627;396628;396629;396630	396624			10	
TAAFIWPMLIHIMDQK	1	Oxidation (M)	1929.9845	0.98449664	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	1	1	2	93.012	84.351	3	1.4032E-07	45262	160513_QHF_FH_JSI12Kac_6	111.33	94.247			1.0305	0.98981	14.969	7	2	Median	1.1445	0.98981	14.307	3	2	Median	0.63695	0.7372	NaN	1	0	Median	1.0305	0.99569	NaN	1	0	Median	0.97779	1.0263	6.8188	2	0	Median	475390000	235980000	239410000	164150000	76873000	87280000	55511000	29009000	26502000	70491000	33282000	37210000	185230000	96813000	88418000	48990	3377	46126	295455;295456;295457;295458;295459;295460;295461	396631;396632;396633;396634;396635;396636;396637;396638;396639;396640	396636		2255;2256	10	
TAAFIWPMLIHIMDQK	1	2 Oxidation (M)	1945.9794	0.97941126	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	2	0				By MS/MS	16	0									1				1	88.091	78.649	3	0.030008	42141	160513_QHF_FH_JSI12Kac_6	34.004	17.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48991	3377	46126	295462	396641	396641		2255;2256	1	
TAAFLIPLLVWITTLPK	1	Unmodified	1896.1488	0.14884307	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	2	1	1	105.12	99.455	2;3	1.992E-86	55252	160513_QHF_FH_JSI9Kac_6	226.59	210.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48992	4449	46127	295463;295464;295465;295466;295467	396642;396643;396644;396645;396646	396645			5	
TAAFLLPILSQIYSDGPGEALR	0	Unmodified	2331.2474	0.2474475	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	2	2	4	2	101.67	98.517	2;3	2.4742E-47	51473	160513_QHF_FH_JSI11Kac_6	226.25	194.18			1.0059	0.96453	20.359	9	1	Median	1.4146	1.2062	18.442	2	0	Median	0.70294	0.83688	20.077	2	1	Median	1.0059	0.94992	16.298	3	0	Median	0.98028	1.0169	18.857	2	0	Median	896900000	440660000	456230000	216890000	85278000	131620000	144100000	81568000	62533000	271390000	133110000	138280000	264510000	140710000	123800000	48993	154	46128	295468;295469;295470;295471;295472;295473;295474;295475;295476;295477	396647;396648;396649;396650;396651;396652;396653;396654	396650			8	
TAAFLLPVIMR	0	Unmodified	1230.7158	0.71585	2939	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	100.09	100.03	2	8.952E-05	81382	160511_QHF_FH_JSI9i_3	88.948	68.046			1.0557	1.0138	9.8842	3	1	Median	1.4407	1.2008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0557	1.0138	NaN	1	1	Median	0.92804	1.01	NaN	1	0	Median	39382000	19716000	19666000	18936000	8759600	10176000	0	0	0	10052000	5004500	5047200	10395000	5952000	4442600	48994	2939	46129	295478;295479;295480	396655;396656;396657	396656			3	
TAAFQQDLEAK	1	Unmodified	1220.6037	0.60371659	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	37.082	36.52	2	9.9094E-06	32811	160511_QHF_FH_JSI11i_1	108.4	92.739			0.88324	0.89044	23.113	5	3	Median	1.1118	0.89044	NaN	1	0	Median	0.72764	0.86247	26.666	2	2	Median	0.81973	0.80161	NaN	1	0	Median	1.2576	1.2905	NaN	1	1	Median	230840000	134700000	96138000	40328000	21539000	18788000	100050000	60821000	39230000	56333000	34349000	21984000	34128000	17992000	16136000	48995	3990	46130	295481;295482;295483;295484;295485	396658;396659;396660;396661;396662	396658			5	
TAAFVLAMLSQVEPANK	1	Unmodified	1788.9444	0.94440596	5423	Q9UMR2	DDX19B	ATP-dependent RNA helicase DDX19B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	3	1	97.537	92.704	3	1.7553E-22	90783	160511_QHF_FH_JSI11i_3	170.11	155.43			0.81635	0.84616	19.793	7	0	Median	1.2883	1.0856	31.971	2	0	Median	0.70689	0.85039	11.204	2	0	Median	0.86089	0.8059	6.8938	2	0	Median	0.75581	0.79482	NaN	1	0	Median	887560000	480030000	407530000	203440000	85622000	117810000	244510000	145160000	99354000	367710000	212220000	155490000	71910000	37037000	34873000	48996	5423	46131	295486;295487;295488;295489;295490;295491;295492;295493	396663;396664;396665;396666;396667;396668;396669;396670;396671;396672;396673	396663			11	
TAAFVLAMLSR	0	Unmodified	1178.6482	0.64816436	5017;5304	Q9NUU7;Q9UHL0	DDX19A;DDX25	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX25	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.115	78.842	2	1.9801E-14	43321	160513_QHF_FH_JSI9Kac_6	164.66	152.44			0.92084	0.95263	6.7146	4	0	Median	1.2121	1.0511	NaN	1	0	Median	0.82711	0.98841	NaN	1	0	Median	0.97566	0.91814	NaN	1	0	Median	0.86911	0.91221	NaN	1	0	Median	1565500000	763230000	802260000	355910000	171420000	184490000	655440000	346700000	308740000	347160000	150430000	196730000	206980000	94680000	112300000	48997	5017;5304	46132	295494;295495;295496;295497	396674;396675;396676;396677;396678;396679;396680;396681	396676			8	
TAAFVLAMLSR	0	Oxidation (M)	1194.6431	0.64307898	5017;5304	Q9NUU7;Q9UHL0	DDX19A;DDX25	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX25	no	no	0	0	1	0	By MS/MS				16	0									1	1				76.173	67.57	2	0.0044305	36271	160513_QHF_FH_JSI9Kac_6	73.499	54.228			1.2196	1.0201	NaN	1	1	Median	1.2196	1.0201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133400000	65952000	67443000	133400000	65952000	67443000	0	0	0	0	0	0	0	0	0	48998	5017;5304	46132	295498	396682	396682		2573	1	
TAAFVLPILQK	1	Unmodified	1199.7278	0.72779489	5748	Q9Y6V7	DDX49	Probable ATP-dependent RNA helicase DDX49	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	92.454	91.727	2	3.7991E-07	79508	160511_QHF_FH_JSI12i_3	118.26	113.48			0.98543	1.0121	31.285	5	3	Median	0.97412	0.83289	NaN	1	1	Median	1.1828	1.3814	43.994	2	2	Median	1.0069	1.0229	NaN	1	0	Median	0.98543	0.98786	NaN	1	0	Median	66480000	37416000	29064000	7620000	3964100	3655800	9878000	5308800	4569100	19355000	10283000	9072300	29627000	17861000	11766000	48999	5748	46133	295499;295500;295501;295502;295503	396683;396684;396685;396686;396687;396688	396688			5	
TAAIAEVAK	1	Unmodified	872.49673	0.49673232	4767	Q9H7E2	TDRD3	Tudor domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.383	23.234	2	0.015973	20309	160511_QHF_FH_JSI11i_1	53.965	26.131			0.67673	0.63416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67673	0.63416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24259000	13335000	10924000	0	0	0	0	0	0	24259000	13335000	10924000	0	0	0	49000	4767	46134	295504	396689	396689			1	
TAAQLKK	2	Unmodified	758.46504	0.46503826	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.6178	5.3869	2	0.0099279	3114	160511_QHF_FH_JSI12i_3	77.741	16.942			1.0095	1.0775	32.955	4	0	Median	2.0432	1.6705	NaN	1	0	Median	1.0376	1.2591	NaN	1	0	Median	0.98215	0.92209	NaN	1	0	Median	0.78026	0.79846	NaN	1	0	Median	490400000	257390000	233010000	60640000	22204000	38436000	86739000	42160000	44579000	79543000	41847000	37696000	263470000	151170000	112300000	49001	1283	46135	295505;295506;295507;295508	396690;396691;396692;396693	396692			4	
TAASGAAGDK	1	Unmodified	847.40356	0.40356022	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	2.4216	2.3249	2	0.0083816	1364	160511_QHF_FH_JSI10i_1	51.445	19.49			1.0354	0.99613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0354	0.99613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47949000	25474000	22475000	0	0	0	0	0	0	47949000	25474000	22475000	0	0	0	49002	2485	46136	295509;295510;295511	396694;396695;396696;396697	396697			4	
TAASGIPYHSEVPVSLK	1	Unmodified	1754.9203	0.9202997	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.567	1	6	2							1	1	4	3	56.282	55.583	2;3	4.1252E-12	47637	160511_QHF_FH_JSI12i_2	153.72	142.94			1.0373	1.1204	26.242	9	2	Median	1.7916	1.5265	NaN	1	0	Median	0.7712	0.94052	NaN	1	0	Median	1.9168	1.8915	36.42	4	1	Linear	0.91206	1.0357	8.8706	3	1	Plateau	827360000	397660000	429700000	138420000	44356000	94065000	127480000	79457000	48025000	372980000	173740000	199240000	188480000	100100000	88374000	49003	2162	46137	295512;295513;295514;295515;295516;295517;295518;295519;295520	396698;396699;396700;396701;396702;396703;396704;396705;396706;396707;396708;396709;396710	396700			13	
TAASGVEANSRPLDHAQPPSSLVIDK	1	Unmodified	2659.3566	0.35655703	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	4.81		8	6					3		2	5	7	3	54.791	52.163	3;4	1.5725E-35	45899	160511_QHF_FH_JSI10i_2	160	147.8			0.96852	1.0049	16.914	16	3	Median	0.96816	0.81794	4.7686	2	0	Median	0.84849	0.94388	17.879	5	0	Median	1.0851	1.0636	13.858	6	2	Median	0.82502	0.84706	22.86	3	1	Plateau	2865100000	1545600000	1319600000	629930000	334310000	295620000	927720000	527190000	400530000	1096600000	560370000	536180000	210930000	123690000	87237000	49004	98	46138	295521;295522;295523;295524;295525;295526;295527;295528;295529;295530;295531;295532;295533;295534;295535;295536;295537	396711;396712;396713;396714;396715;396716;396717;396718;396719;396720;396721;396722;396723;396724;396725;396726;396727;396728;396729;396730;396731;396732;396733;396734;396735;396736;396737;396738;396739;396740;396741;396742;396743;396744;396745;396746;396747;396748;396749	396743			39	
TAATAGIIGWVYGGIPAFIHAK	1	Unmodified	2213.1997	0.19970945	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	1	2	3	95.927	87.055	3;4	2.1519E-12	51607	160513_QHF_FH_JSI10Kac_6	104.68	90.804			0.88034	0.92881	20.484	8	2	Median	1.3405	1.1505	2.2828	2	0	Median	0.82205	0.97042	NaN	1	0	Median	0.96207	0.92881	1.5866	2	0	Median	0.68301	0.71892	10.445	3	2	Median	2011500000	1015900000	995660000	519710000	241830000	277890000	348540000	187870000	160670000	744550000	356100000	388450000	398730000	230080000	168650000	49005	4907	46139	295538;295539;295540;295541;295542;295543;295544;295545	396750;396751;396752;396753;396754;396755;396756;396757;396758;396759	396759			9	
TAATFAR	0	Unmodified	736.38679	0.38678794	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.25	5.63		3						1				2	2	13.656	10.197	2	0.020963	9150	160511_QHF_FH_JSI12i_2	52.018	26.399			0.5784	0.60534	30.455	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7004	0.71496	23.536	2	1	Median	0.41339	0.45965	NaN	1	1	Median	1417800000	999060000	418760000	0	0	0	0	0	0	760220000	500840000	259380000	657590000	498220000	159380000	49006	1805	46140	295546;295547;295548;295549	396760;396761;396762;396763	396761			4	
TAATSVPAYEPLDSLDR	0	Unmodified	1804.8843	0.88430813	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	67.645	67.092	2	7.6818E-13	61020	160511_QHF_FH_JSI11i_1	187.44	160.65			1.2363	1.0888	7.9542	5	3	Median	1.2978	1.0761	NaN	1	0	Median	0.93482	1.0888	NaN	1	0	Median	1.2597	1.2216	2.737	2	2	Median	0.9875	1.029	NaN	1	1	Median	354890000	170950000	183940000	67066000	29455000	37610000	72073000	41534000	30539000	152370000	68800000	83573000	63382000	31165000	32217000	49007	4254	46141	295550;295551;295552;295553;295554	396764;396765;396766;396767;396768;396769;396770;396771	396764			8	
TAAVANSMNYLTK	1	Unmodified	1382.6864	0.68640036	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.62	5	4	1				1			3	2	3	3	50.757	48.922	2	4.8075E-11	43996	160511_QHF_FH_JSI10i_1	153.95	138.8			0.95649	0.98095	11.542	10	3	Median	1.1518	0.96245	19.727	2	0	Median	0.83324	0.98852	13.121	2	0	Median	0.99391	0.98505	3.3796	3	1	Median	0.73276	0.76771	15.123	3	2	Plateau	970850000	491210000	479640000	173870000	79336000	94532000	229170000	119630000	109540000	264390000	130110000	134270000	303420000	162130000	141290000	49008	5135	46142	295555;295556;295557;295558;295559;295560;295561;295562;295563;295564;295565	396772;396773;396774;396775;396776;396777;396778;396779;396780;396781;396782;396783;396784;396785;396786;396787;396788;396789	396778			18	
TAAVWEEIVGESNDK	1	Unmodified	1646.7788	0.77878042	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	76.26	75.456	2;3	1.7309E-15	67175	160511_QHF_FH_JSI10i_2	168.02	153.14			0.94201	0.96018	22.312	5	0	Median	0.94201	0.83328	NaN	1	0	Median	0.55747	0.67898	NaN	1	0	Median	1.0829	1.0826	16.965	2	0	Median	0.92601	1.0431	NaN	1	0	Median	193120000	99452000	93671000	30583000	16774000	13809000	35768000	23499000	12269000	92270000	40494000	51776000	34502000	18685000	15817000	49009	4042	46143	295566;295567;295568;295569;295570	396790;396791;396792;396793;396794;396795;396796	396796			7	
TAAYAIPMLQLLLHR	0	Unmodified	1709.9651	0.96508182	5121	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.965	86.571	3	4.0408E-17	46751	160513_QHF_FH_JSI12Kac_6	141.46	128.59			0.85392	0.88189	9.7142	4	0	Median	1.1668	0.99951	NaN	1	0	Median	0.71333	0.84748	NaN	1	0	Median	0.99594	0.91769	NaN	1	0	Median	0.73216	0.79938	NaN	1	0	Median	289460000	149150000	140310000	54883000	20011000	34872000	162450000	88464000	73983000	55338000	31091000	24247000	16794000	9582000	7212000	49010	5121	46144	295571;295572;295573;295574	396797;396798;396799;396800;396801	396800			5	
TAAYAIPMLQLLLHRK	1	Unmodified	1838.06	0.060044842	5121	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.004	81.286	4	0.00018122	45749	160513_QHF_FH_JSI10Kac_6	82.925	71.98			0.60742	0.72925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60742	0.72925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41185000	22451000	18734000	0	0	0	41185000	22451000	18734000	0	0	0	0	0	0	49011	5121	46145	295575	396802	396802			1	
TAAYGHFGR	0	Unmodified	978.46716	0.46716353	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	7.75	6.4		1	4						3	3	4		1	17.508	14.806	2;3	1.429E-06	11812	160511_QHF_FH_JSI9i_3	96.668	77.937			0.95015	0.92825	7.6274	7	3	Median	1.1528	0.94171	7.7086	3	1	Median	0.77155	0.88762	4.2181	3	2	Median	NaN	NaN	NaN	0	0	Median	0.95015	1.0423	NaN	1	0	Median	1610800000	824200000	786570000	904930000	429150000	475780000	697990000	390660000	307330000	0	0	0	7842400	4392500	3450000	49012	1370	46146	295576;295577;295578;295579;295580;295581;295582;295583	396803;396804;396805;396806;396807;396808;396809;396810;396811;396812;396813;396814	396810			12	
TAAYVNAIEK	1	Unmodified	1078.5659	0.56587452	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	4.62	5.18	4	4	2				3			3	4	3	3	36.693	33.67	2	5.2303E-05	29683	160511_QHF_FH_JSI10i_2	92.538	73.756			0.69651	0.81943	28.47	13	3	Median	1.4178	1.1572	46.008	3	1	Plateau	0.68506	0.80542	5.0957	4	1	Median	0.69651	0.67133	26.908	3	0	Median	0.85212	0.88427	37.734	3	1	Median	2383600000	1242800000	1140700000	515790000	232290000	283500000	642630000	391010000	251630000	660220000	359260000	300960000	564940000	260280000	304660000	49013	762	46147	295584;295585;295586;295587;295588;295589;295590;295591;295592;295593;295594;295595;295596	396815;396816;396817;396818;396819;396820;396821;396822	396822			7	
TACAINKVLMGR	1	Acetyl (K);Oxidation (M)	1390.7061	0.70608995	3614;2844	Q52LJ0;Q8NCA5	FAM98B;FAM98A	Protein FAM98B;Protein FAM98A	no	no	1	0	1	1			By MS/MS		15	0								1				1		65.962	55.046	2	0.059148	29828	160513_QHF_FH_JSI11Kac_5	46.158	31.484			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1210100	1210100	0	0	0	0	0	0	0	1210100	1210100	0	0	0	0	49014	2844;3614	46148	295597	396823	396823	2695		1	
TACAINKVLMGR	1	Acetyl (K)	1374.7112	0.71117532	3614;2844	Q52LJ0;Q8NCA5	FAM98B;FAM98A	Protein FAM98B;Protein FAM98A	no	no	1	0	0	1			By MS/MS		15	0								1				1		72.496	61.73	2	0.0053187	32998	160513_QHF_FH_JSI11Kac_5	66.435	55.283			0.058564	0.058039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.058564	0.058039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3738500	3617500	121080	0	0	0	0	0	0	3738500	3617500	121080	0	0	0	49015	2844;3614	46148	295598	396824	396824	2695		1	
TACFLLPMFER	0	Unmodified	1383.6679	0.66791353	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	96.963	96.836	2	8.8678E-05	83714	160511_QHF_FH_JSI12i_3	99.653	81.341			1.2837	1.2688	31.067	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0451	1.0186	NaN	1	1	Median	1.5767	1.5806	NaN	1	1	Median	40922000	12327000	28595000	0	0	0	0	0	0	7787600	3310600	4477100	33134000	9016400	24118000	49016	3720	46149	295599;295600	396825;396826	396826			2	
TACGFCFVEYYSR	0	Unmodified	1658.6857	0.68574843	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		78.316	69.002	2	5.2219E-06	37759	160513_QHF_FH_JSI11Kac_6	128.67	113.8			1.0254	0.98146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0254	0.98146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10611000	3414400	7196700	0	0	0	0	0	0	10611000	3414400	7196700	0	0	0	49017	1768	46150	295601	396827	396827			1	
TADDPSLSLIK	1	Unmodified	1158.6132	0.61321864	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	54.675	52.297	2	3.8921E-07	46183	160511_QHF_FH_JSI9i_1	118.04	80.887			1.2297	1.2279	14.526	5	2	Median	1.2825	1.0417	NaN	1	0	Median	1.2297	1.4533	NaN	1	1	Median	1.2957	1.2583	NaN	1	1	Median	1.0571	1.1212	12.856	2	0	Median	3298500000	1499800000	1798600000	877390000	382850000	494540000	790290000	352310000	437990000	863940000	393290000	470640000	766840000	371360000	395480000	49018	1486	46151	295602;295603;295604;295605;295606	396828;396829;396830;396831;396832;396833;396834	396833			7	
TADEDRGPR	0	Unmodified	1015.4683	0.46828574	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By matching	By MS/MS	By matching	By MS/MS	1.89	0.737	3	4	2							1	2	2	4	4.6788	4.4498	2;3	1.8618E-05	2191	160511_QHF_FH_JSI12i_3	125.47	99.085			1.2483	0.95221	18.484	9	0	Linear	1.5598	1.2784	NaN	1	0	Median	0.93567	1.1342	17.324	2	0	Median	0.89734	0.89849	20.506	2	0	Median	0.94848	0.99826	8.8441	4	0	Linear	2149600000	1099800000	1049800000	408980000	159970000	249020000	527730000	271940000	255800000	601840000	322250000	279590000	611040000	345640000	265400000	49019	2502	46152	295607;295608;295609;295610;295611;295612;295613;295614;295615	396835;396836;396837;396838	396838			4	
TADEVPLK	1	Unmodified	871.4651	0.46509784	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	23.117	22.578	2	0.00093466	19350	160511_QHF_FH_JSI9i_1	96.253	71.33			0.85268	0.93293	14.784	4	0	Median	0.84406	0.70367	NaN	1	0	Median	0.82248	0.96518	NaN	1	0	Median	0.97661	0.94357	NaN	1	0	Median	0.86138	0.9224	NaN	1	0	Median	947970000	482290000	465680000	211940000	117610000	94323000	252190000	132190000	120000000	216060000	102830000	113220000	267790000	129650000	138140000	49020	5153	46153	295616;295617;295618;295619	396839;396840;396841;396842;396843;396844	396844			6	
TADGFAVPEPPK	1	Unmodified	1227.6136	0.61355299	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				51.66	50.46	2;3	0.00058718	44488	160511_QHF_FH_JSI9i_1	69.346	55.754			0.8465	0.70355	5.2546	2	0	Median	0.8465	0.70355	5.2546	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103160000	59801000	43360000	103160000	59801000	43360000	0	0	0	0	0	0	0	0	0	49021	3377	46154	295620;295621	396845;396846	396845			2	
TADGIVSHLK	1	Unmodified	1039.5662	0.56620887	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.34	1	12	11				1	5	8	9	7	10	12	30.939	26.989	2;3	2.486E-14	22624	160511_QHF_FH_JSI11i_2	175.91	118.87			0.96605	0.97852	68.253	37	9	Median	1.0839	0.92294	72.769	9	1	Median	0.87939	1.0309	25.574	7	0	Median	1.0758	1.0495	72.966	10	4	Median	0.89713	0.97144	83.365	11	4	Median	17532000000	8446200000	9085700000	3168700000	1262000000	1906600000	2618400000	1306700000	1311700000	6889100000	3216900000	3672200000	4855800000	2660500000	2195200000	49022	1344	46155	295622;295623;295624;295625;295626;295627;295628;295629;295630;295631;295632;295633;295634;295635;295636;295637;295638;295639;295640;295641;295642;295643;295644;295645;295646;295647;295648;295649;295650;295651;295652;295653;295654;295655;295656;295657;295658;295659	396847;396848;396849;396850;396851;396852;396853;396854;396855;396856;396857;396858;396859;396860;396861;396862;396863;396864;396865;396866;396867;396868;396869;396870;396871;396872;396873;396874;396875;396876;396877;396878;396879;396880;396881;396882;396883;396884;396885;396886;396887;396888;396889;396890;396891;396892;396893;396894;396895;396896;396897;396898;396899;396900;396901;396902;396903;396904;396905;396906;396907;396908;396909;396910;396911;396912	396882			66	
TADGIVSHLKK	2	Unmodified	1167.6612	0.66117189	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			10							3	3		4	23.443	22.581	2;3;4	7.4828E-06	18208	160511_QHF_FH_JSI9i_3	83.397	70.82			1.2416	1.2578	55	9	4	Median	1.7933	1.4572	21.295	3	0	Median	0.90157	1.0352	35.005	3	2	Median	NaN	NaN	NaN	0	0	Median	1.2416	1.2578	90.57	3	2	Median	961300000	450480000	510820000	372880000	154810000	218070000	270340000	144090000	126250000	0	0	0	318090000	151580000	166510000	49023	1344	46156	295660;295661;295662;295663;295664;295665;295666;295667;295668;295669	396913;396914;396915;396916;396917;396918;396919;396920;396921;396922;396923;396924	396919			11	
TADGIVSHLKK	2	Acetyl (K)	1209.6717	0.67173657	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4		2	4	1	46.576	36.764	2;3	1.3671E-08	20031	160513_QHF_FH_JSI11Kac_6	121.02	92.817			0.33863	0.34384	91.615	5	1	Median	NaN	NaN	NaN	0	0	Median	1.5157	1.7642	6.7543	2	0	Median	0.32834	0.32596	2.5116	2	0	Median	0.3199	0.34384	NaN	1	1	Median	78779000	55732000	23047000	0	0	0	17906000	7019200	10887000	56163000	44804000	11358000	4710000	3908800	801260	49024	1344	46156	295670;295671;295672;295673;295674;295675;295676	396925;396926;396927;396928;396929	396925	1276		5	
TADMDVGQIGFHR	0	Unmodified	1445.6721	0.67214728	3363	Q86WR0	CCDC25	Coiled-coil domain-containing protein 25	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2.2	0.4		4	1							2		1	2	48.847	48.043	2;3	1.1183E-05	40948	160511_QHF_FH_JSI12i_3	101.56	93.945			1.0194	1.0562	22.131	4	0	Median	0.90803	0.76605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0244	1.0259	NaN	1	0	Median	1.141	1.1916	12.959	2	0	Median	287320000	144640000	142680000	53478000	27879000	25599000	0	0	0	73115000	45226000	27889000	160730000	71536000	89193000	49025	3363	46157	295677;295678;295679;295680;295681	396930;396931	396931			2	
TADRQYMEGFNDELEAFK	1	Unmodified	2162.9579	0.95788377	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	2	4	74.641	74.103	2;3	1.8747E-23	65300	160511_QHF_FH_JSI9i_2	179.87	170.12			1.0865	1.2666	31.218	8	3	Median	1.8111	1.5322	NaN	1	0	Median	1.0539	1.3005	NaN	1	0	Median	1.4293	1.3755	10.157	2	0	Median	0.83687	0.85752	29.7	4	3	Median	926470000	431800000	494680000	90934000	32272000	58662000	164650000	79633000	85019000	273640000	116270000	157380000	397240000	203620000	193620000	49026	2738	46158	295682;295683;295684;295685;295686;295687;295688;295689	396932;396933;396934;396935;396936;396937;396938;396939;396940;396941;396942;396943	396935			12	
TADVIIMMLDATK	1	Unmodified	1420.7306	0.73057336	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		3							3	1	1	2	2	97.804	93.116	2	1.0691E-24	45968	160513_QHF_FH_JSI12Kac_6	161.99	126.03			1.0693	1.1505	20.685	6	3	Median	1.3584	1.1526	NaN	1	1	Median	1.0542	1.2807	NaN	1	0	Median	1.027	1.0045	4.3065	2	2	Median	1.2963	1.4165	29.661	2	0	Median	606060000	301780000	304280000	42058000	16043000	26014000	122090000	65110000	56977000	257550000	117460000	140090000	184370000	103160000	81206000	49027	1843	46159	295690;295691;295692;295693;295694;295695	396944;396945;396946;396947;396948;396949;396950;396951	396950			8	
TAEAFSDEK	1	Unmodified	996.44001	0.4400053	2807	Q32P41	TRMT5	tRNA (guanine(37)-N1)-methyltransferase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.449	14.019	2	0.0013004	11758	160511_QHF_FH_JSI12i_1	78.113	51.511			0.25889	0.26026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25889	0.26026	NaN	1	1	Median	28030000	21705000	6325400	0	0	0	0	0	0	0	0	0	28030000	21705000	6325400	49028	2807	46160	295696	396952	396952			1	
TAEAGGVTGK	1	Unmodified	889.45051	0.45051041	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.23	4	4	2			2				2	2	4	4	7.5118	6.0651	2	2.2811E-07	4713	160511_QHF_FH_JSI11i_1	115.71	90.155			0.90856	0.91536	18.537	12	0	Median	1.1699	0.97949	17.883	2	0	Median	0.77913	0.92519	16.587	2	0	Median	0.90856	0.85748	16.654	4	0	Median	0.92617	1.0169	23.199	4	0	Median	5614600000	2856600000	2758000000	1521600000	637960000	883690000	1413800000	765630000	648150000	1401800000	729200000	672600000	1277400000	723790000	553560000	49029	939	46161	295697;295698;295699;295700;295701;295702;295703;295704;295705;295706;295707;295708	396953;396954;396955;396956;396957;396958;396959;396960;396961;396962;396963;396964;396965;396966;396967;396968;396969;396970;396971;396972	396954			20	
TAEAQLAYELQGAR	0	Unmodified	1519.7631	0.76307078	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	53.46	52.811	2	1.3568E-09	47836	160511_QHF_FH_JSI11i_1	142.76	127.62			0.81103	0.92451	20.863	4	3	Median	NaN	NaN	NaN	0	0	Median	0.81103	0.94576	8.4777	2	2	Median	1.0198	0.95957	NaN	1	0	Median	0.59962	0.63361	NaN	1	1	Median	177950000	91565000	86384000	0	0	0	96332000	49130000	47202000	64417000	30644000	33773000	17200000	11790000	5409300	49030	2523	46162	295709;295710;295711;295712;295713	396973;396974;396975;396976;396977;396978;396979;396980	396975			8	
TAEDDETPVDLNK	1	Unmodified	1445.6522	0.65218292	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	32.828	32.48	2	1.7709E-08	28942	160511_QHF_FH_JSI10i_1	101.95	91.197			0.75494	0.81635	21.824	4	4	Median	NaN	NaN	NaN	0	0	Median	0.67392	0.80331	NaN	1	1	Median	0.89576	0.85687	37.419	2	2	Median	0.82676	0.82959	NaN	1	1	Median	149150000	90950000	58202000	0	0	0	53811000	36895000	16916000	70096000	38901000	31194000	25246000	15154000	10092000	49031	135	46163	295714;295715;295716;295717;295718;295719;295720;295721;295722	396981;396982;396983;396984;396985;396986;396987;396988;396989;396990	396987			10	
TAEDYSVDENGQR	0	Unmodified	1482.6223	0.62227978	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.513	17.031	2	1.0114E-30	14443	160511_QHF_FH_JSI10i_1	190.57	188.18			1.0964	1.1934	17.105	4	0	Linear	1.0353	0.85798	NaN	1	0	Median	0.78005	0.90445	NaN	1	0	Median	1.1657	1.1452	NaN	1	0	Median	1.1611	1.2129	NaN	1	0	Median	435420000	198680000	236740000	88422000	34517000	53905000	101990000	53957000	48033000	120120000	47435000	72683000	124890000	62769000	62118000	49032	418	46164	295723;295724;295725;295726	396991;396992;396993;396994;396995;396996;396997;396998	396995			8	
TAEELMNFSK	1	Unmodified	1168.5434	0.54342452	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.6	4	4	2				2			3	4	2	3	50.825	48.23	2	5.0785E-19	43953	160511_QHF_FH_JSI12i_1	176.38	164.61			0.93118	0.92875	15.51	12	1	Median	0.99852	0.82894	21.254	3	0	Median	0.79567	0.92875	15.189	4	1	Median	0.91747	0.91149	1.1302	2	0	Median	1.0322	1.1159	6.9855	3	0	Median	9026600000	4419200000	4607500000	1978900000	862580000	1116300000	2317400000	1186800000	1130600000	2352400000	1196900000	1155500000	2377900000	1172900000	1205000000	49033	1721	46165	295727;295728;295729;295730;295731;295732;295733;295734;295735;295736;295737;295738	396999;397000;397001;397002;397003;397004;397005;397006;397007;397008;397009;397010;397011;397012;397013;397014;397015;397016;397017;397018;397019;397020;397021;397022;397023;397024;397025;397026	397007			28	
TAEELMNFSK	1	Oxidation (M)	1184.5383	0.53833914	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0			By MS/MS		14	0							1					1		41.981	31.938	2	0.0080695	19310	160513_QHF_FH_JSI11Kac_4	55.567	15.215			1.1414	1.1501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1414	1.1501	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3954500	1883700	2070800	0	0	0	0	0	0	3954500	1883700	2070800	0	0	0	49034	1721	46165	295739	397027	397027		1401	1	
TAEENLDR	0	Unmodified	946.43559	0.43558863	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.0277	8.6647	2	3.4326E-07	6578	160511_QHF_FH_JSI12i_1	153.73	121.6			1.0893	1.1059	8.5789	4	0	Median	1.4386	1.2012	NaN	1	0	Median	0.8439	0.98519	NaN	1	0	Median	1.1696	1.1428	NaN	1	0	Median	1.0145	1.0701	NaN	1	0	Median	1153700000	567630000	586020000	332430000	149780000	182650000	345490000	179720000	165770000	256890000	126830000	130060000	218830000	111300000	107530000	49035	1558	46166	295740;295741;295742;295743	397028;397029;397030	397029			3	
TAEEPAASGR	0	Unmodified	987.46214	0.46213773	4926	Q9NQS7	INCENP	Inner centromere protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		6.3265	6.1519	2	0.018666	4197	160511_QHF_FH_JSI10i_1	42.19	32.441			1.5897	1.6808	28.708	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1543	1.372	NaN	1	0	Median	2.1893	2.0591	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68195000	29897000	38297000	0	0	0	43405000	21698000	21708000	24789000	8199800	16590000	0	0	0	49036	4926	46167	295744;295745	397031;397032	397032			2	
TAEEPPQEK	1	Unmodified	1027.4822	0.48220447	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7164	8.3656	2	2.8574E-06	5888	160511_QHF_FH_JSI9i_1	124.98	103.68			0.8503	0.84394	10.504	4	1	Median	1.0876	0.90084	NaN	1	0	Median	0.63964	0.76116	NaN	1	0	Median	0.97816	0.94989	NaN	1	0	Median	0.73916	0.79063	NaN	1	1	Median	1666300000	831220000	835090000	505360000	220460000	284900000	421680000	252240000	169440000	376760000	172620000	204140000	362510000	185900000	176610000	49037	366	46168	295746;295747;295748;295749	397033;397034;397035;397036;397037;397038;397039	397038			7	
TAEEQGELAFQDAK	1	Unmodified	1535.7104	0.71036651	81	CON__Q6KB66-1;Q6KB66	KRT80	Keratin, type II cytoskeletal 80	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.057	37.774	2	8.4301E-10	33777	160511_QHF_FH_JSI10i_1	105.95	82.227		+	4.1683	4.0711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1683	4.0711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54539000	8844000	45695000	0	0	0	0	0	0	54539000	8844000	45695000	0	0	0	49038	81	46169	295750;295751	397040;397041	397041			2	
TAEEVAALIR	0	Unmodified	1071.5924	0.59242362	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.86	5	4					2			2	3	3	3	52.364	50.567	2	4.9187E-19	43335	160511_QHF_FH_JSI12i_2	176.6	131.52			0.92241	1.099	31.328	10	3	Median	1.7051	1.4527	14.683	2	1	Median	0.9167	1.099	6.9917	3	0	Plateau	1.2356	1.2168	4.3922	2	0	Median	0.79891	0.83174	35.553	3	2	Median	971310000	492140000	479170000	169940000	74063000	95882000	209910000	115120000	94793000	340620000	164540000	176080000	250830000	138420000	112410000	49039	3101	46170	295752;295753;295754;295755;295756;295757;295758;295759;295760;295761;295762	397042;397043;397044;397045;397046;397047;397048;397049;397050;397051;397052;397053;397054;397055;397056;397057;397058	397045			17	
TAEFQVAR	0	Unmodified	920.47158	0.4715802	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.67	0.471	2	4								1	2	2	1	23.983	23.332	2	0.0014529	19417	160511_QHF_FH_JSI11i_2	89.296	51.737			1.0748	1.0883	8.9849	6	0	Median	1.443	1.2281	NaN	1	0	Median	0.99008	1.1955	13.174	2	0	Median	1.0748	1.0689	2.4344	2	0	Median	0.95898	1.0687	NaN	1	0	Median	710820000	354260000	356560000	81286000	35560000	45726000	186510000	89391000	97117000	319040000	159360000	159680000	123980000	69943000	54040000	49040	4982	46171	295763;295764;295765;295766;295767;295768	397059;397060;397061;397062;397063;397064	397063			6	
TAEHEAAQQDLQSK	1	Unmodified	1554.7274	0.72741355	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		9.8094	9.5165	2	2.4469E-10	7319	160511_QHF_FH_JSI10i_1	113.24	99.887			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49041	3328	46172	295769;295770;295771	397065;397066;397067	397066			3	
TAEHFQEAMEESK	1	Unmodified	1535.6562	0.65622244	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	2	5	24.777	24.019	2;3	7.5223E-23	19953	160511_QHF_FH_JSI11i_2	148.52	141.48			1.1853	1.212	21.067	10	3	Median	1.25	1.0556	0.53049	2	1	Median	1.133	1.3948	2.7746	2	0	Median	1.3109	1.3127	18.324	2	0	Median	1.0879	1.1802	27.715	4	2	Median	654790000	283600000	371200000	103240000	49274000	53966000	127610000	60040000	67567000	212600000	95759000	116840000	211350000	78527000	132820000	49042	4374	46173	295772;295773;295774;295775;295776;295777;295778;295779;295780;295781;295782	397068;397069;397070;397071;397072;397073;397074;397075;397076;397077;397078;397079;397080;397081;397082	397076			15	
TAEKQLVGPPEAQLR	1	Acetyl (K)	1677.905	0.90498399	5837				yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	86.124	76.897	2	0.0011374	41089	160513_QHF_FH_JSI12Kac_6	80.979	43.652	+		1.0143	0.95268	11.43	5	0	Median	1.2808	1.0946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0143	0.95268	0	2	0	Median	0.79578	0.83243	0	2	0	Median	480910000	251400000	229510000	100780000	41895000	58883000	0	0	0	280650000	154590000	126060000	99477000	54910000	44567000	49043	5837	46174	295783;295784;295785;295786;295787	397083;397084	397084	3576		2	
TAEKTSLSFK	2	Acetyl (K)	1152.6027	0.60265396	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	49.174	39.331	2	2.6936E-08	22418	160513_QHF_FH_JSI12Kac_4	140.16	98.716			0.98158	1.0809	13.126	6	0	Median	NaN	NaN	NaN	0	0	Median	0.85744	1.0257	1.6981	2	0	Median	1.3994	1.3482	2.4772	2	0	Median	0.98158	1.0809	3.1666	2	0	Median	181490000	92193000	89300000	0	0	0	69153000	39709000	29444000	45771000	18390000	27382000	66569000	34094000	32474000	49044	5461	46175	295788;295789;295790;295791;295792;295793	397085;397086;397087;397088;397089;397090	397089	3432;3433		6	
TAELNVQVPEEPTHLDQR	0	Unmodified	2075.0283	0.028346601	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	57.305	56.641	3	0.00072221	48429	160511_QHF_FH_JSI12i_2	45.916	38.383			1.2544	1.2331	23.488	5	2	Median	NaN	NaN	NaN	0	0	Median	0.99728	1.1613	NaN	1	0	Median	1.4886	1.4681	24.676	2	1	Median	1.2463	1.2993	34.756	2	1	Median	187500000	77358000	110140000	0	0	0	38212000	18879000	19332000	89009000	29858000	59150000	60277000	28620000	31657000	49045	2899	46176	295794;295795;295796;295797;295798;295799	397091;397092;397093;397094;397095	397091			5	
TAELPPLK	1	Unmodified	867.50657	0.50656873	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	40.093	39.463	2	0.00063796	36050	160511_QHF_FH_JSI12i_1	101.64	82.861			0.89509	0.89514	10.447	4	0	Median	0.90372	0.74661	NaN	1	0	Median	0.77056	0.90569	NaN	1	0	Median	0.9296	0.88471	NaN	1	0	Median	0.88655	0.94857	NaN	1	0	Median	996300000	505900000	490410000	153850000	75892000	77954000	253710000	137360000	116350000	315580000	150930000	164650000	273170000	141720000	131450000	49046	2581	46177	295800;295801;295802;295803;295804	397096;397097;397098;397099;397100;397101;397102;397103;397104;397105	397100			10	
TAEMEGLLTEPNASK	1	Oxidation (M)	1605.7556	0.75560214	5839				yes	yes	0	0	1	0	By MS/MS				13	0						1				1				20.049	2.2377	2	0.0078417	6632	160513_QHF_FH_JSI9Kac_3	51.445	36.073	+		0.94753	0.77771	NaN	1	0	Median	0.94753	0.77771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72983000	36944000	36040000	72983000	36944000	36040000	0	0	0	0	0	0	0	0	0	49047	5839	46178	295805	397106	397106		2764	1	
TAEMNEK	1	Unmodified	821.35892	0.35891821	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.4217	5.1837	2	0.0087459	3157	160511_QHF_FH_JSI10i_1	71.342	51.496			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49048	403	46179	295806	397107	397107			1	
TAENATSGETLEENEAGD	0	Unmodified	1836.7497	0.74972472	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5	4			4						1	2	3	2	33.07	28.413	2	1.6649E-98	26057	160511_QHF_FH_JSI11i_1	261.41	258.19			1.0218	1.0615	18.689	8	0	Median	1.3047	1.0734	NaN	1	0	Median	0.8232	0.96886	24.182	2	0	Median	1.0857	1.0497	18.761	3	0	Plateau	0.86509	0.91046	12.995	2	0	Median	2147700000	1051000000	1096800000	464430000	195020000	269410000	623940000	347050000	276900000	541500000	256300000	285210000	517860000	252590000	265270000	49049	5475	46180	295807;295808;295809;295810;295811;295812;295813;295814	397108;397109;397110;397111;397112;397113;397114;397115;397116;397117;397118;397119	397109			12	
TAENFRALSTGEK	1	Unmodified	1422.7103	0.71030693	2040	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	1	By MS/MS	By MS/MS		By matching	2.6	0.49		2	3							2	2		1	28.15	27.21	3	0.00056954	22619	160511_QHF_FH_JSI10i_3	63.709	52.126			0.38056	0.37226	195.25	5	1	Median	6.1446	5.1634	30.171	2	1	Median	0.093966	0.11084	3.2671	2	0	Median	NaN	NaN	NaN	0	0	Median	0.38056	0.37226	NaN	1	0	Median	684230000	457750000	226480000	181690000	35546000	146140000	374020000	337100000	36923000	0	0	0	128520000	85112000	43412000	49050	2040	46181	295815;295816;295817;295818;295819	397120;397121;397122;397123;397124;397125	397120			6	
TAENFRALSTGEKGFGYK	2	Acetyl (K)	2016.9905	0.99050453	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		66.611	56.972	3	0.014795	30893	160513_QHF_FH_JSI11Kac_6	58.635	48.535			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8272900	8272900	0	0	0	0	0	0	0	8272900	8272900	0	0	0	0	49051	2040	46182	295820	397126	397126	2094;2095		1	
TAEPAQPSSASGSGNSDDAIR	0	Unmodified	2016.8985	0.89845464	1489	P39880	CUX1	Homeobox protein cut-like 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	22.541	21.879	2	1.651E-17	18983	160511_QHF_FH_JSI10i_1	140.1	125.42			0.94081	0.99353	25.889	3	1	Median	1.3982	1.1746	NaN	1	0	Median	0.63335	0.70672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94081	0.99353	NaN	1	0	Median	83495000	44170000	39326000	27457000	12785000	14672000	20089000	15719000	4370000	0	0	0	35950000	15666000	20284000	49052	1489	46183	295821;295822;295823	397127;397128	397128			2	
TAESQTPTPSATSFFSGK	1	Unmodified	1842.8636	0.86357268	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	3.7	8	2					1			2	4	4	1	59.709	58.051	2;3	1.3134E-60	52632	160511_QHF_FH_JSI11i_1	263.59	239.3			1.1054	1.0899	17.658	10	8	Median	1.5911	1.3071	NaN	1	1	Median	0.77669	0.92198	20.074	4	4	Median	1.1141	1.1106	14.571	4	2	Median	1.0668	1.0859	NaN	1	1	Median	1056100000	493490000	562580000	108850000	37408000	71439000	295130000	151260000	143860000	466810000	215410000	251410000	185280000	89410000	95869000	49053	1857	46184	295824;295825;295826;295827;295828;295829;295830;295831;295832;295833;295834	397129;397130;397131;397132;397133;397134;397135;397136;397137;397138;397139;397140;397141;397142;397143;397144	397130			15	
TAEVLANK	1	Unmodified	844.46543	0.46543219	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.32	13.878	2	0.0017123	11122	160511_QHF_FH_JSI9i_1	85.813	48.254			0.88737	0.88152	30.969	4	0	Median	1.0661	0.88141	NaN	1	0	Median	0.7386	0.88163	NaN	1	0	Median	0.66431	0.65477	NaN	1	0	Median	1.3142	1.3869	NaN	1	0	Median	857850000	446790000	411060000	190040000	102910000	87133000	225460000	126960000	98500000	225480000	116520000	108960000	216870000	100390000	116470000	49054	2517	46185	295835;295836;295837;295838	397145;397146;397147;397148;397149	397149			5	
TAFDDAIAELDTLNEDSYK	1	Unmodified	2129.9641	0.96407459	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.379	19	4								5	7	4	7	98.268	98.095	2;3	0	88822	160511_QHF_FH_JSI11i_1	438.48	428.15			0.91148	0.95639	40.793	20	9	Median	1.0383	0.8425	15.491	5	2	Median	0.84158	0.99689	58.216	6	2	Median	0.69676	0.66658	41.897	4	2	Median	0.91842	0.97363	39.217	5	3	Median	3511100000	1905000000	1606000000	631550000	279110000	352430000	938350000	580150000	358200000	978530000	558770000	419760000	962630000	486980000	475650000	49055	1976	46186	295839;295840;295841;295842;295843;295844;295845;295846;295847;295848;295849;295850;295851;295852;295853;295854;295855;295856;295857;295858;295859;295860;295861	397150;397151;397152;397153;397154;397155;397156;397157;397158;397159;397160;397161;397162;397163;397164;397165;397166;397167;397168;397169;397170;397171;397172;397173;397174;397175;397176;397177;397178;397179;397180;397181;397182;397183;397184;397185;397186;397187;397188;397189;397190;397191;397192;397193;397194;397195;397196;397197;397198;397199;397200;397201;397202;397203;397204;397205;397206;397207;397208;397209;397210;397211;397212;397213	397158			63	
TAFDEAIAELDTLNEDSYK	1	Unmodified	2143.9797	0.97972465	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.41	0.577	14	7	1							7	4	6	5	99.067	98.918	2;3	0	89768	160511_QHF_FH_JSI11i_1	462.41	436.68			0.94082	0.91622	14.984	18	3	Median	1.0971	0.91622	19.795	6	1	Median	0.72242	0.87679	6.401	4	1	Median	0.98575	0.95534	15.4	4	0	Median	0.87084	0.93313	8.028	4	1	Linear	5908200000	3133700000	2774500000	1183100000	570410000	612650000	1643400000	901630000	741790000	1557100000	834300000	722770000	1524600000	827370000	697250000	49056	1288	46187	295862;295863;295864;295865;295866;295867;295868;295869;295870;295871;295872;295873;295874;295875;295876;295877;295878;295879;295880;295881;295882;295883	397214;397215;397216;397217;397218;397219;397220;397221;397222;397223;397224;397225;397226;397227;397228;397229;397230;397231;397232;397233;397234;397235;397236;397237;397238;397239;397240;397241;397242;397243;397244;397245;397246;397247;397248;397249;397250;397251;397252;397253;397254;397255;397256;397257;397258;397259;397260;397261;397262;397263;397264;397265;397266;397267	397218			54	
TAFDEAIAELDTLNEESYK	1	Unmodified	2157.9954	0.99537472	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.59	0.651	11	9	2							5	8	4	5	99.297	99.142	2;3	0	90084	160511_QHF_FH_JSI11i_1	468.33	434.75			0.96095	0.9364	17.139	18	1	Median	1.0618	0.88869	4.7234	5	1	Median	0.8331	1.007	24.994	5	0	Median	0.91626	0.89801	11.402	4	0	Median	0.94322	0.98958	10.809	4	0	Median	4764300000	2457600000	2306800000	579910000	234550000	345360000	1981300000	1153000000	828300000	1149900000	552840000	597060000	1053200000	517170000	536040000	49057	1384	46188	295884;295885;295886;295887;295888;295889;295890;295891;295892;295893;295894;295895;295896;295897;295898;295899;295900;295901;295902;295903;295904;295905	397268;397269;397270;397271;397272;397273;397274;397275;397276;397277;397278;397279;397280;397281;397282;397283;397284;397285;397286;397287;397288;397289;397290;397291;397292;397293;397294;397295;397296;397297;397298;397299;397300;397301;397302;397303;397304;397305;397306;397307;397308;397309;397310;397311;397312;397313;397314;397315;397316;397317;397318;397319;397320;397321;397322	397272			55	
TAFDEAIAELDTLSEESYK	1	Unmodified	2130.9845	0.98447568	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.63	0.666	9	8	2							5	5	5	4	101.42	101.31	2;3	0	92000	160511_QHF_FH_JSI11i_1	483.62	472.04			0.98036	0.95852	10.222	19	1	Median	1.1604	0.95416	9.757	5	0	Median	0.76779	0.88907	9.2978	5	1	Median	1.0197	1.0255	1.9012	5	0	Median	0.96571	1.0502	5.1216	4	0	Median	39295000000	20115000000	19180000000	6749200000	2872900000	3876300000	13376000000	7592600000	5783500000	9639000000	4708800000	4930200000	9531000000	4941200000	4589900000	49058	2051	46189	295906;295907;295908;295909;295910;295911;295912;295913;295914;295915;295916;295917;295918;295919;295920;295921;295922;295923;295924	397323;397324;397325;397326;397327;397328;397329;397330;397331;397332;397333;397334;397335;397336;397337;397338;397339;397340;397341;397342;397343;397344;397345;397346;397347;397348;397349;397350;397351;397352;397353;397354;397355	397326			32	
TAFDLLNLNR	0	Unmodified	1175.6299	0.62987176	5385	Q9UL03	INTS6	Integrator complex subunit 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		77.486	77.486	2	0.0042626	69201	160511_QHF_FH_JSI11i_3	57.859	34.787			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49059	5385	46190	295925	397356	397356			1	
TAFGIISTVK	1	Unmodified	1035.5964	0.59644637	2086	P78346	RPP30	Ribonuclease P protein subunit p30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.24		3	4					4	1	3	3	2	4	65.323	60.152	2	7.5076E-06	51506	160511_QHF_FH_JSI12i_3	121.73	96.174			1.0113	0.96564	15.144	11	3	Median	1.3417	1.1119	24.258	3	1	Plateau	0.67673	0.78161	16.36	3	1	Plateau	1.0367	1.0037	6.2763	2	0	Median	1.0253	1.0557	4.6785	3	1	Plateau	735830000	381130000	354700000	81372000	39772000	41600000	132440000	79595000	52846000	209330000	100590000	108730000	312690000	161170000	151530000	49060	2086	46191	295926;295927;295928;295929;295930;295931;295932;295933;295934;295935;295936;295937	397357;397358;397359;397360;397361;397362;397363;397364;397365;397366;397367;397368;397369;397370;397371;397372;397373	397371			17	
TAFHQEQGHQLLK	1	Unmodified	1535.7845	0.78447492	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	21.965	21.713	3;4	0.00030862	18253	160511_QHF_FH_JSI11i_3	62.042	50.273			0.97719	0.90874	36.359	5	0	Median	NaN	NaN	NaN	0	0	Median	1.041	1.1838	NaN	1	0	Median	0.86495	0.80633	16.909	2	0	Median	1.0634	1.0641	61.248	2	0	Median	475900000	218400000	257500000	0	0	0	28728000	16106000	12622000	176240000	86483000	89755000	270940000	115810000	155130000	49061	1742	46192	295938;295939;295940;295941;295942	397374;397375;397376;397377;397378	397375			5	
TAFKNFIEK	2	Acetyl (K)	1138.6023	0.60226003	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.824	61.36	2	0.0035828	33254	160513_QHF_FH_JSI11Kac_6	77.533	58.439			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49062	5658	46193	295943	397379	397379	3521		1	
TAFQEALDAAGDK	1	Unmodified	1335.6307	0.63065962	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.05	15	4	5		1	6	4	5		10	10	7	13	53.601	48.888	2;3	1.338E-60	6789	160513_QHF_FH_JSI9Kac_3	205.02	165.72			1.0028	1.0595	32.721	38	20	Median	1.3698	1.1632	31.992	9	6	Median	0.88906	1.0595	24.236	10	3	Median	0.98189	0.95599	22.673	7	4	Median	0.98968	1.0633	43.536	12	7	Median	102210000000	48157000000	54051000000	25901000000	12323000000	13577000000	28685000000	14179000000	14506000000	27157000000	11984000000	15173000000	20466000000	9670900000	10795000000	49063	973	46194	295944;295945;295946;295947;295948;295949;295950;295951;295952;295953;295954;295955;295956;295957;295958;295959;295960;295961;295962;295963;295964;295965;295966;295967;295968;295969;295970;295971;295972;295973;295974;295975;295976;295977;295978;295979;295980;295981;295982;295983	397380;397381;397382;397383;397384;397385;397386;397387;397388;397389;397390;397391;397392;397393;397394;397395;397396;397397;397398;397399;397400;397401;397402;397403;397404;397405;397406;397407;397408;397409;397410;397411;397412;397413;397414;397415;397416;397417;397418;397419;397420;397421;397422;397423;397424;397425;397426;397427;397428;397429;397430;397431;397432;397433;397434;397435;397436;397437;397438;397439;397440;397441;397442;397443;397444;397445;397446;397447;397448;397449;397450;397451;397452;397453;397454;397455;397456;397457	397426			77	
TAFSENEDDESRPAVALIR	0	Unmodified	2119.0182	0.018175845	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							1	3	1		56.528	55.665	3	0.00051876	49166	160511_QHF_FH_JSI10i_2	45.608	36.816			0.99968	1.0785	21.109	4	3	Median	1.5681	1.3356	NaN	1	1	Median	0.86962	1.0198	25.699	2	2	Median	1.0028	0.95114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128520000	59803000	68717000	34389000	14450000	19939000	63250000	35416000	27834000	30882000	9938000	20944000	0	0	0	49064	5409	46195	295984;295985;295986;295987;295988	397458;397459;397460;397461;397462;397463;397464	397464			7	
TAFVMLLR	0	Unmodified	949.54191	0.54190838	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.203	71.672	2	0.00026599	39516	160513_QHF_FH_JSI10Kac_6	117.16	75.858			0.921	0.95928	13.279	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75952	0.8733	NaN	1	0	Median	1.1168	1.0537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163190000	88678000	74509000	0	0	0	110580000	64539000	46043000	52604000	24138000	28466000	0	0	0	49065	3375	46196	295989;295990;295991;295992	397465;397466;397467;397468;397469;397470	397469			6	
TAFVVEHDFIMATYLADR	0	Unmodified	2098.0194	0.019361819	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		97.474	97.366	3	6.4301E-05	86566	160511_QHF_FH_JSI11i_3	66.152	51.062			1.3739	1.3101	1.8721	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3739	1.3101	1.8721	2	1	Median	NaN	NaN	NaN	0	0	Median	59023000	24500000	34524000	0	0	0	0	0	0	59023000	24500000	34524000	0	0	0	49066	1945	46197	295993;295994	397471;397472	397471			2	
TAFYLAEFFVNEAR	0	Unmodified	1676.8199	0.81985737	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	12.6	5.85		1	1						6	3	3	1	1	95.891	88.97	2;3	7.189E-13	89616	160511_QHF_FH_JSI9i_2	122.42	109.44			1.0414	1.109	21.084	7	3	Median	1.3394	1.1367	1.0307	2	1	Median	0.89707	1.0717	27.581	3	2	Plateau	1.1896	1.1854	NaN	1	0	Median	1.0414	1.109	NaN	1	0	Median	563580000	269780000	293810000	211700000	85932000	125770000	275830000	146440000	129390000	34654000	14683000	19971000	41397000	22728000	18669000	49067	3891	46198	295995;295996;295997;295998;295999;296000;296001;296002	397473;397474;397475;397476;397477;397478	397474			6	
TAFYLAEFFVNEARK	1	Unmodified	1804.9148	0.91482039	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			95.212	92.248	2;3	0.0013612	81865	160511_QHF_FH_JSI9i_3	61.186	45.048			0.97482	0.96093	55.684	2	2	Median	1.7298	1.4246	NaN	1	1	Median	0.54935	0.64818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68588000	39961000	28628000	21342000	7388900	13953000	47246000	32572000	14674000	0	0	0	0	0	0	49068	3891	46199	296003;296004	397479;397480	397479			2	
TAFYSFYLPIAAAMYMAGIDGEK	1	Oxidation (M)	2545.1909	0.19092018	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			2						7	1	2	3	3	99.637	93.162	2;3	2.7314E-146	49123	160513_QHF_FH_JSI12Kac_6	262.19	242.44			1.034	1.039	10.042	9	1	Median	1.2392	1.0508	NaN	1	0	Median	1.023	1.2219	7.5374	2	1	Median	1.0403	0.99888	6.344	3	0	Median	0.92839	0.9732	4.9485	3	0	Median	2139700000	1069700000	1070000000	222610000	89603000	133010000	377390000	197250000	180130000	705530000	339060000	366470000	834190000	443830000	390360000	49069	1051	46200	296005;296006;296007;296008;296009;296010;296011;296012;296013	397481;397482;397483;397484;397485;397486;397487;397488;397489;397490;397491;397492;397493;397494;397495	397491		672;673	15	
TAFYSFYLPIAAAMYMAGIDGEK	1	Unmodified	2529.196	0.19600556	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.7	6.56		4	5	1					10	4	4	7	5	102.25	97.451	2;3	8.8409E-189	53003	160513_QHF_FH_JSI9Kac_6	292.28	266.96			1.0265	0.99669	14.771	20	6	Median	1.2173	1.0399	10.253	4	1	Median	1.0017	1.2005	19.614	4	0	Median	0.99008	0.93414	7.7653	7	3	Median	1.0909	1.1371	8.4495	5	2	Linear	17559000000	9040800000	8518700000	3166900000	1411400000	1755500000	5184200000	2905100000	2279100000	5771800000	3051600000	2720200000	3436600000	1672600000	1764000000	49070	1051	46200	296014;296015;296016;296017;296018;296019;296020;296021;296022;296023;296024;296025;296026;296027;296028;296029;296030;296031;296032;296033	397496;397497;397498;397499;397500;397501;397502;397503;397504;397505;397506;397507;397508;397509;397510;397511;397512;397513;397514;397515;397516;397517;397518;397519;397520;397521;397522;397523;397524;397525;397526;397527;397528;397529;397530	397517			35	
TAFYSFYLPIAAAMYMAGIDGEK	1	2 Oxidation (M)	2561.1858	0.1858348	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	2	0				By MS/MS	16	0									1				1	96.155	86.713	3	5.5227E-12	47324	160513_QHF_FH_JSI12Kac_6	100.76	93.728			1.1828	1.2576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1828	1.2576	NaN	1	0	Median	54462000	25742000	28720000	0	0	0	0	0	0	0	0	0	54462000	25742000	28720000	49071	1051	46200	296034	397531	397531		672;673	1	
TAGAPDPAWDWQHVGPGYR	0	Unmodified	2079.9551	0.95512208	463	O60936	NOL3	Nucleolar protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	65.834	65.553	3	7.5056E-11	58408	160511_QHF_FH_JSI11i_3	116.04	109.92			1.2066	1.1723	23.283	4	2	Median	NaN	NaN	NaN	0	0	Median	0.65129	0.78536	NaN	1	0	Median	1.3566	1.2755	6.7771	2	2	Median	1.1248	1.1303	NaN	1	0	Median	295730000	138940000	156790000	0	0	0	52380000	30813000	21567000	149260000	65933000	83328000	94092000	42197000	51894000	49072	463	46201	296035;296036;296037;296038	397532;397533;397534;397535;397536;397537	397532			6	
TAGAPTGTVPQQLQVHGVQQSVPVTQER	0	Unmodified	2912.5104	0.51043191	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	58.541	58.126	3	1.0291E-14	51662	160511_QHF_FH_JSI11i_3	93.446	82.443			1.2013	1.0915	2.6508	3	0	Median	1.2285	1.0677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2013	1.1255	NaN	1	0	Median	1.0549	1.0915	NaN	1	0	Median	97954000	49608000	48346000	28425000	13408000	15017000	0	0	0	45398000	23241000	22157000	24131000	12959000	11172000	49073	1213	46202	296039;296040;296041	397538;397539;397540;397541;397542;397543	397539			6	
TAGESDMK	1	Unmodified	837.35383	0.35383283	5132	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	5.5012	5.1773	2	0.0099826	3205	160511_QHF_FH_JSI10i_1	55.531	27.424			0.79918	0.76583	16.839	4	0	Median	1.0115	0.82614	NaN	1	0	Median	0.53988	0.63275	NaN	1	0	Median	0.94213	0.9286	NaN	1	0	Median	0.67793	0.70993	NaN	1	0	Median	789390000	424570000	364820000	137240000	53447000	83792000	250940000	158420000	92523000	203220000	95738000	107480000	197990000	116960000	81025000	49074	5132	46203	296042;296043;296044;296045	397544;397545	397545			2	
TAGINVR	0	Unmodified	729.41334	0.41333704	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.16	2	4	2				2	3		1	4	4	4	15.359	11.68	2	0.0054009	7653	160513_QHF_FH_JSI10Kac_4	94.777	53.925			0.82101	0.86746	17.334	13	0	Median	0.82101	0.68254	NaN	1	0	Median	0.59585	0.71775	16.352	4	0	Linear	0.82839	0.84264	15.659	4	0	Median	0.8922	0.96733	22.015	4	0	Median	6035300000	3272600000	2762700000	696150000	338490000	357660000	1222600000	741650000	480940000	2410200000	1301500000	1108700000	1706400000	890960000	815430000	49075	1722	46204	296046;296047;296048;296049;296050;296051;296052;296053;296054;296055;296056;296057;296058	397546;397547;397548;397549;397550;397551;397552;397553;397554;397555	397549			10	
TAGLEEK	1	Unmodified	746.38103	0.38103386	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	8.3983	8.0794	2	0.0023127	5763	160511_QHF_FH_JSI11i_1	111.82	40.903			0.85477	0.8601	9.3109	5	0	Median	1.0768	0.8601	NaN	1	0	Median	0.85477	0.99094	NaN	1	0	Median	0.94484	0.91718	13.439	2	0	Median	0.79021	0.84059	NaN	1	0	Median	3953100000	2113100000	1839900000	952710000	444020000	508690000	1102400000	647440000	454940000	1019800000	528180000	491640000	878150000	493490000	384670000	49076	127	46205	296059;296060;296061;296062;296063	397556;397557;397558	397556			3	
TAGLVMTHLILK	1	Unmodified	1295.7635	0.76352847	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	3	3	4	3	72.075	67.185	2;3	1.1239E-19	36064	160513_QHF_FH_JSI11Kac_6	151.26	139.04			1.0061	0.88696	19.612	13	1	Median	1.0693	0.86708	24.969	3	0	Plateau	0.68699	0.77727	6.6172	3	0	Plateau	1.0138	0.95591	16.068	4	1	Median	0.79715	0.81281	26.701	3	0	Median	2317300000	1169200000	1148000000	542890000	246040000	296850000	571290000	332240000	239060000	652810000	291870000	360930000	550260000	299100000	251170000	49077	2605	46206	296064;296065;296066;296067;296068;296069;296070;296071;296072;296073;296074;296075;296076	397559;397560;397561;397562;397563;397564;397565;397566;397567;397568;397569;397570;397571;397572;397573;397574;397575;397576;397577;397578;397579;397580	397568			22	
TAGLVMTHLILK	1	Oxidation (M)	1311.7584	0.75844309	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	60.694	52.97	3	7.9316E-06	28056	160513_QHF_FH_JSI9Kac_6	92.856	78.425			1.0722	1.0035	9.7829	5	0	Median	1.3026	1.0919	11.951	2	0	Median	0.82486	0.98548	NaN	1	0	Median	0.98634	0.9384	NaN	1	0	Median	1.0722	1.1226	NaN	1	0	Median	159450000	76812000	82641000	76651000	36483000	40168000	32826000	17397000	15429000	29410000	14122000	15287000	20567000	8809900	11757000	49078	2605	46206	296077;296078;296079;296080;296081	397581;397582;397583;397584;397585;397586	397584		2049	6	
TAGNSEFLGK	1	Unmodified	1022.5033	0.50327426	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	25.139	23.49	2	1.5121E-07	20794	160511_QHF_FH_JSI12i_1	119.68	101.69			0.89633	0.87894	16.455	9	1	Median	1.0176	0.84424	10.559	2	0	Median	0.59859	0.71451	6.0264	2	0	Median	0.89633	0.87894	9.9904	3	1	Median	0.96358	1.0451	19.112	2	0	Median	1032600000	525810000	506780000	223350000	100500000	122850000	247110000	167240000	79877000	236710000	116780000	119930000	325410000	141290000	184110000	49079	2084	46207	296082;296083;296084;296085;296086;296087;296088;296089;296090	397587;397588;397589;397590;397591;397592;397593;397594;397595;397596;397597;397598;397599;397600;397601;397602;397603	397592			17	
TAGPLESSETEEASQLK	1	Unmodified	1775.8425	0.84250289	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				1	2	2	3	46.157	44.497	2;3	1.0288E-97	39855	160511_QHF_FH_JSI10i_1	256.95	235.39			0.96871	0.92583	27.689	8	0	Median	0.99235	0.81914	NaN	1	0	Median	0.58004	0.68219	40.975	2	0	Median	1.0022	0.97308	8.2724	2	0	Median	1.147	0.97472	15.738	3	0	Plateau	1035600000	511850000	523770000	168460000	81897000	86561000	269410000	142360000	127050000	350680000	166720000	183960000	247070000	120870000	126200000	49080	5213	46208	296091;296092;296093;296094;296095;296096;296097;296098	397604;397605;397606;397607;397608;397609;397610;397611;397612;397613;397614;397615;397616;397617;397618;397619;397620;397621	397613			18	
TAGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVK	1	Unmodified	3808.1437	0.14372148	5485	Q9Y223	GNE	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	2	1	1	1	99.802	91.223	5	4.8118E-77	54959	160513_QHF_FH_JSI10Kac_6	175.67	170.72			0.77922	0.67122	54.217	5	2	Median	0.77588	0.66015	2.3506	2	2	Median	0.78439	0.92305	NaN	1	0	Median	0.25873	0.24481	NaN	1	0	Median	0.84626	0.90803	NaN	1	0	Median	865500000	446290000	419210000	240030000	139100000	100940000	244390000	145240000	99147000	225510000	81906000	143610000	155570000	80045000	75521000	49081	5485	46209	296099;296100;296101;296102;296103	397622;397623;397624;397625	397625			3	
TAGTICLETFK	1	Unmodified	1239.6169	0.61692381	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	1	3	56.836	56.13	2	5.6015E-07	50773	160511_QHF_FH_JSI11i_1	113.93	101.7			0.70984	0.77775	53.092	4	2	Median	NaN	NaN	NaN	0	0	Median	0.65942	0.76392	NaN	1	0	Median	0.5563	0.54338	NaN	1	0	Median	1.1348	1.2225	61.425	2	2	Median	351890000	195900000	155980000	0	0	0	100880000	65932000	34950000	86124000	56481000	29643000	164880000	73492000	91392000	49082	1069;3467	46210	296104;296105;296106;296107;296108;296109	397626;397627;397628;397629;397630;397631;397632;397633	397626			8	
TAGTLFGEGFR	0	Unmodified	1154.572	0.57202253	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	57.413	56.665	2	0.00022196	50079	160511_QHF_FH_JSI10i_2	80.102	69.344			0.89165	0.96697	10.042	6	2	Median	1.2761	1.0963	NaN	1	0	Median	0.86616	1.0649	NaN	1	0	Median	0.93482	0.94644	10.591	2	2	Median	0.84188	0.89455	3.455	2	0	Median	949760000	500090000	449680000	110770000	43835000	66938000	163160000	88405000	74751000	350180000	184970000	165210000	325650000	182870000	142780000	49083	2957;5035	46211	296110;296111;296112;296113;296114;296115	397634;397635;397636;397637;397638;397639;397640;397641;397642	397641			9	
TAGWNIPMGLLYSK	1	Unmodified	1549.7963	0.79628516	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	99.176	99.053	2	1.5231E-05	85743	160511_QHF_FH_JSI12i_3	148.18	128.52		+	0.91729	0.89535	26.579	7	1	Median	1.1539	0.99305	24.696	2	1	Median	0.921	1.0947	28.423	2	0	Median	0.86255	0.80103	NaN	1	0	Median	0.70827	0.74159	31.395	2	0	Median	438200000	240120000	198080000	45959000	20759000	25201000	58788000	32299000	26489000	111640000	66193000	45448000	221810000	120870000	100940000	49084	66	46212	296116;296117;296118;296119;296120;296121;296122	397643;397644;397645;397646;397647;397648;397649;397650;397651;397652;397653	397653			11	
TAGYPNVNIHNFTTSWR	0	Unmodified	1976.9493	0.94930842	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			73.014	69.017	3	0.00012892	37169	160513_QHF_FH_JSI10Kac_6	73.138	62.799			1.1828	1.1711	18.025	2	1	Median	1.261	1.0309	NaN	1	1	Median	1.1095	1.3303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76019000	35883000	40136000	35728000	16000000	19728000	40291000	19883000	20408000	0	0	0	0	0	0	49085	2162	46213	296123;296124	397654;397655	397655			2	
TAGYYPNPPLVLSSDETLISK	1	Unmodified	2264.1576	0.15762944	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	91.033	90.616	2;3	1.8962E-12	82127	160511_QHF_FH_JSI10i_1	142.45	129.57			1.0055	1.0045	15.847	8	1	Median	1.3452	1.114	11.729	2	0	Median	0.93967	1.0882	32.079	2	0	Median	0.99325	0.96663	9.1449	2	1	Median	0.89578	0.93378	7.4311	2	0	Median	239810000	122310000	117500000	48658000	19893000	28765000	60165000	33935000	26230000	57059000	28585000	28474000	73929000	39899000	34029000	49086	2970	46214	296125;296126;296127;296128;296129;296130;296131;296132;296133;296134;296135	397656;397657;397658;397659;397660;397661;397662;397663;397664;397665;397666;397667;397668;397669;397670;397671;397672;397673;397674;397675	397669			20	
TAHIDVHFLK	1	Unmodified	1179.64	0.64004252	1221	P23229	ITGA6	Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	43.53	43.298	4	0.0014283	36919	160511_QHF_FH_JSI12i_3	52.49	47.176			1.4309	1.4674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4309	1.4674	NaN	1	0	Median	16699000	7090400	9608200	0	0	0	0	0	0	0	0	0	16699000	7090400	9608200	49087	1221	46215	296136	397676	397676			1	
TAHKNGSTLK	2	Acetyl (K)	1097.5829	0.58292157	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.7	0.458								3	7	2	3	2	3	7.4462	-0.4898	2;3	4.5976E-05	2599	160513_QHF_FH_JSI10Kac_5	96.229	84.364			0.79671	0.91172	26.431	10	0	Median	1.271	1.1121	10.678	2	0	Median	0.77306	0.92568	8.753	3	0	Median	0.55288	0.54555	9.0559	2	0	Median	0.82108	0.89798	8.2307	3	0	Median	70153000	38639000	31514000	9147400	4084200	5063200	23306000	11822000	11483000	20271000	13179000	7091800	17429000	9553100	7876000	49088	887	46216	296137;296138;296139;296140;296141;296142;296143;296144;296145;296146	397677;397678;397679;397680;397681;397682	397679	626		6	
TAHLDEEVNK	1	Unmodified	1154.5568	0.5567664	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3.71	4.2		6					1			2		2	3	14.19	12.634	2;3	1.0247E-06	10361	160511_QHF_FH_JSI9i_2	109.79	84.936			0.92956	0.93515	10.089	7	1	Median	1.162	1.0047	3.1441	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0297	1.0465	15.908	2	0	Median	0.80837	0.932	5.381	3	1	Median	538530000	298500000	240030000	109120000	54418000	54704000	0	0	0	232360000	117250000	115100000	197050000	126830000	70225000	49089	1004	46217	296147;296148;296149;296150;296151;296152;296153	397683;397684;397685;397686;397687;397688;397689	397685			7	
TAHLDEEVNKGDILVVATGQPEMVK	2	Unmodified	2692.3742	0.37418093	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	71.017	70.514	3;4	4.6508E-21	60830	160511_QHF_FH_JSI12i_3	127.38	120.35			0.90738	0.92852	8.221	7	2	Median	1.0838	0.91689	NaN	1	0	Median	0.71596	0.87271	NaN	1	1	Median	1.1374	1.0664	0.3293	2	1	Median	0.90738	0.95262	3.689	3	0	Plateau	1047300000	526050000	521230000	23305000	11264000	12041000	21136000	13551000	7584200	292960000	101450000	191510000	709880000	399790000	310100000	49090	1004	46218	296154;296155;296156;296157;296158;296159;296160	397690;397691;397692;397693;397694;397695;397696;397697;397698;397699	397698			10	
TAHLDEEVNKGDILVVATGQPEMVK	2	Oxidation (M)	2708.3691	0.36909555	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	64.123	63.837	3	1.3226E-07	55010	160511_QHF_FH_JSI12i_3	71.052	57.864			0.92054	0.92916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92054	0.92916	NaN	1	0	Median	29250000	15881000	13369000	0	0	0	0	0	0	0	0	0	29250000	15881000	13369000	49091	1004	46218	296161	397700;397701;397702;397703	397700		588	4	
TAHNSEADLEESFNEHELEPSSPK	1	Unmodified	2696.1838	0.1837972	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				52.381	51.336	4	0.059987	45052	160511_QHF_FH_JSI9i_2	11.741	5.0183			1.8015	1.5545	NaN	1	1	Median	1.8015	1.5545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24578000	5094000	19484000	24578000	5094000	19484000	0	0	0	0	0	0	0	0	0	49092	3426	46219	296162	397704	397704			1	
TAHSLFK	1	Unmodified	802.43374	0.43373813	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	12.923	12.53	2	0.0089406	9337	160511_QHF_FH_JSI12i_3	81.297	36.576			0.72053	0.91627	18.678	4	0	Linear	1.2074	0.99914	NaN	1	0	Median	0.9393	1.0559	NaN	1	0	Median	0.87423	0.84028	NaN	1	0	Median	0.68923	0.69837	NaN	1	0	Median	2112300000	1079300000	1033000000	310340000	137040000	173300000	421050000	189540000	231510000	636900000	336940000	299960000	744040000	415760000	328270000	49093	1844	46220	296163;296164;296165;296166	397705;397706;397707;397708;397709	397709			5	
TAHSLFKR	1	Acetyl (K)	1000.5454	0.54541385	1844	P55060	CSE1L	Exportin-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	2	1	27.78	19.27	2;3	7.2506E-07	11373	160513_QHF_FH_JSI10Kac_6	145.16	117.9			0.48129	0.52234	63.299	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0565	1.2562	0.83159	2	0	Median	0.38237	0.36164	0.4423	2	0	Median	0.48129	0.52234	NaN	1	0	Median	193870000	108980000	84888000	0	0	0	108220000	50147000	58069000	80495000	55646000	24849000	5160600	3190900	1969600	49094	1844	46221	296167;296168;296169;296170;296171	397710;397711;397712	397711	1853		3	
TAIELGPLWSSSLFNTGFLK	1	Unmodified	2180.1518	0.1517562	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.56	102.56	2	2.3021E-237	89338	160511_QHF_FH_JSI12i_3	341.16	265.34			1.1102	1.0855	2.0776	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1562	1.1016	NaN	1	0	Median	1.066	1.0697	NaN	1	0	Median	136880000	62481000	74399000	0	0	0	0	0	0	61230000	28140000	33090000	75650000	34341000	41309000	49095	3249	46222	296172;296173	397713	397713			1	
TAIGALK	1	Unmodified	672.41703	0.41702544	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.816	2	2	2								1	2	3	23.375	22.969	2	0.01187	19020	160511_QHF_FH_JSI12i_3	60.358	17.292			0.663	0.64865	51.823	5	5	Median	NaN	NaN	NaN	0	0	Median	0.35898	0.41752	NaN	1	1	Median	0.62397	0.61714	7.0433	2	2	Median	1.0422	1.1214	57.654	2	2	Median	668220000	361530000	306690000	0	0	0	49840000	34718000	15123000	332150000	181630000	150520000	286230000	145180000	141050000	49096	5441	46223	296174;296175;296176;296177;296178;296179	397714;397715;397716;397717;397718;397719	397719			6	
TAIGKAGYTDK	2	Acetyl (K)	1165.5979	0.59790293	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		37.612	28.716	2	0.045484	15897	160513_QHF_FH_JSI10Kac_3	43.77	35.55			0.7455	0.8012	77.855	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1777	1.3894	NaN	1	0	Median	0.4719	0.46201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7657800	5025900	2631900	0	0	0	3704000	1957000	1747000	3953900	3068900	884950	0	0	0	49097	854	46224	296180;296181	397720	397720			1	
TAIHEVMEQGR	0	Unmodified	1269.6136	0.61356977	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		8	4						4	2	4	5	5	24.033	21.281	2;3	3.191E-06	17879	160511_QHF_FH_JSI11i_3	119.53	77.338			0.953	1.003	18.596	15	7	Median	1.2799	1.0765	8.6021	2	0	Median	0.82416	0.96126	8.424	4	4	Linear	1.0162	1.0072	9.874	5	2	Median	0.63078	0.6806	20.533	4	1	Median	1762300000	920170000	842120000	72667000	41956000	30710000	506400000	242430000	263970000	545850000	263300000	282550000	637380000	372480000	264900000	49098	1254	46225	296182;296183;296184;296185;296186;296187;296188;296189;296190;296191;296192;296193;296194;296195;296196;296197	397721;397722;397723;397724;397725;397726;397727;397728;397729;397730;397731;397732;397733;397734;397735;397736;397737;397738;397739;397740;397741;397742	397721			21	
TAIHEVMEQGR	0	Oxidation (M)	1285.6085	0.60848439	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	1	3	21.875	21.361	2;3	0.0013307	17921	160511_QHF_FH_JSI11i_3	67.726	56.236			0.90674	1.0123	42.588	4	1	Median	NaN	NaN	NaN	0	0	Median	0.83558	1.0192	NaN	1	1	Median	0.64749	0.61369	NaN	1	0	Median	1.2751	1.323	38.822	2	0	Median	162920000	84085000	78837000	0	0	0	58210000	30591000	27618000	24517000	14719000	9797800	80195000	38774000	41421000	49099	1254	46225	296198;296199;296200;296201;296202	397743;397744;397745;397746	397743		886	3	
TAIHEVMEQQTISIAK	1	Unmodified	1797.9295	0.92948418	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.61		11	4						4	5	4	5	5	55.904	53.286	2;3	7.7064E-17	46740	160511_QHF_FH_JSI9i_2	123.84	100.6			0.89079	0.9808	22.267	18	7	Median	1.1914	1.0306	27.888	4	3	Median	0.69775	0.83715	25.837	4	2	Median	0.82332	0.77854	4.9712	5	1	Median	0.9963	1.0485	8.7879	5	1	Median	1475600000	733810000	741790000	258110000	99619000	158500000	298560000	185660000	112900000	437620000	240130000	197490000	481310000	208410000	272900000	49100	1411	46226	296203;296204;296205;296206;296207;296208;296209;296210;296211;296212;296213;296214;296215;296216;296217;296218;296219;296220;296221	397747;397748;397749;397750;397751;397752;397753;397754;397755;397756;397757;397758;397759;397760;397761;397762;397763;397764;397765;397766;397767;397768;397769;397770;397771;397772;397773;397774;397775;397776	397761			30	
TAIHKALCDNVDTR	1	Acetyl (K)	1654.8097	0.80970339	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		44.655	34.482	3	0.00095334	19528	160513_QHF_FH_JSI11Kac_5	61.444	53.719			0.787	0.83606	45.651	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0009	1.1546	NaN	1	0	Median	0.6188	0.6054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7161900	4529600	2632300	0	0	0	3076100	1780000	1296100	4085800	2749700	1336100	0	0	0	49101	1665	46227	296222;296223	397777;397778;397779;397780	397778	1693		4	
TAIHTAAMDMLGGPGIESQCR	0	Unmodified	2215.0184	0.018392316	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	64.146	63.77	3	1.4322E-15	56564	160511_QHF_FH_JSI11i_3	126.25	117.86			1.0568	1.2354	18.034	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99622	1.2354	NaN	1	0	Median	1.0568	0.99033	NaN	1	0	Median	1.3636	1.4157	NaN	1	0	Median	330320000	152620000	177700000	0	0	0	94691000	42720000	51971000	118770000	60644000	58127000	116860000	49254000	67601000	49102	3175	46228	296224;296225;296226	397781;397782;397783;397784;397785	397782			5	
TAILVGGMSTQK	1	Unmodified	1204.6486	0.64855829	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.91	6.19	1	3					3	4		2	4	4	1	52.295	45.345	2	0.00025802	39644	160511_QHF_FH_JSI9i_2	76.843	57.49			0.81463	0.74706	36.078	8	3	Median	0.88505	0.74706	22.451	2	0	Median	0.91825	1.0855	1.6169	2	0	Median	0.5454	0.53127	40.252	3	2	Median	0.41649	0.46672	NaN	1	1	Median	170880000	101790000	69093000	47579000	25918000	21661000	55565000	33867000	21698000	66393000	41075000	25319000	1346400	931360	415000	49103	4603	46229	296227;296228;296229;296230;296231;296232;296233;296234;296235;296236;296237	397786;397787;397788;397789;397790;397791;397792;397793;397794;397795;397796;397797;397798;397799	397793			14	
TAILVGGMSTQK	1	Oxidation (M)	1220.6435	0.64347291	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	1	0		By MS/MS	By MS/MS		14	0							2				1	1		40.413	30.485	2	0.0032488	18516	160513_QHF_FH_JSI11Kac_4	74.162	63.404			1.1752	1.1334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1752	1.1334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2771300	1198500	1572800	0	0	0	0	0	0	2771300	1198500	1572800	0	0	0	49104	4603	46229	296238;296239	397800;397801	397801		2498	2	
TAIQAAGYPDK	1	Unmodified	1133.5717	0.57168818	1044	P13929	ENO3	Beta-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	31.498	27.421	2	4.5318E-05	15792	160513_QHF_FH_JSI12Kac_3	99.283	74.507			0.90659	0.94672	20.43	7	2	Median	1.05	0.85388	NaN	1	0	Median	0.87318	1.0299	36.17	2	1	Median	0.93411	0.91087	30.296	2	1	Median	0.90041	0.94742	0.10372	2	0	Median	1095800000	560320000	535490000	297950000	135250000	162690000	261950000	134240000	127710000	287100000	164790000	122310000	248810000	126040000	122770000	49105	1044	46230	296240;296241;296242;296243;296244;296245;296246	397802;397803;397804;397805;397806;397807;397808;397809;397810;397811	397810			10	
TAIQKAVSEGYK	2	Acetyl (K)	1335.7034	0.70343063	1392	P32320	CDA	Cytidine deaminase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		49.515	38.925	2	0.0055294	22933	160513_QHF_FH_JSI11Kac_4	62.408	46.778			0.33975	0.33726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33975	0.33726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4756300	3118300	1638000	0	0	0	0	0	0	4756300	3118300	1638000	0	0	0	49106	1392	46231	296247;296248	397812;397813	397813	1347		2	
TAITVEHLAIK	1	Unmodified	1194.6972	0.69722304	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.62		8						5	8	6	5	5	5	55.512	49.039	2;3	1.3078E-30	42924	160511_QHF_FH_JSI10i_2	168.3	149.56			0.90975	0.97615	16.095	21	1	Median	1.2856	1.0572	19.425	6	1	Median	0.80174	0.97615	16.657	5	0	Median	1.0194	0.98259	14.786	5	0	Median	0.83163	0.93001	13.673	5	0	Median	3430700000	1832700000	1598000000	690620000	343610000	347020000	903330000	521510000	381820000	1155000000	594500000	560520000	681750000	373060000	308690000	49107	4940	46232	296249;296250;296251;296252;296253;296254;296255;296256;296257;296258;296259;296260;296261;296262;296263;296264;296265;296266;296267;296268;296269	397814;397815;397816;397817;397818;397819;397820;397821;397822;397823;397824;397825;397826;397827;397828;397829;397830;397831;397832;397833;397834;397835;397836;397837;397838;397839;397840;397841;397842;397843;397844;397845;397846;397847;397848;397849;397850	397835			37	
TAKLQDFK	2	Acetyl (K)	991.53385	0.53384611	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	2	1	44.98	35.192	2	0.00078656	20749	160513_QHF_FH_JSI11Kac_4	111.46	52.538			0.78902	0.83492	13.526	5	0	Median	NaN	NaN	NaN	0	0	Median	0.74689	0.89143	9.2613	2	0	Median	0.74211	0.72621	6.6126	2	0	Median	0.85962	0.93561	NaN	1	0	Median	160120000	94400000	65718000	0	0	0	57144000	32795000	24349000	49853000	31485000	18368000	53122000	30120000	23001000	49108	1415	46233	296270;296271;296272;296273;296274	397851;397852;397853;397854;397855;397856	397855	1374;1376		6	
TALAATNPAVR	0	Unmodified	1083.6037	0.60365701	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	28.221	27.454	2	0.007037	23817	160511_QHF_FH_JSI9i_2	51.445	40.58			1.4197	1.5334	21.768	5	0	Median	1.7423	1.5334	NaN	1	0	Median	1.4197	1.7321	NaN	1	0	Median	1.6208	1.5728	25.621	2	0	Median	0.99217	1.0954	NaN	1	0	Median	154330000	64915000	89416000	32459000	13511000	18948000	23359000	10455000	12903000	67779000	26267000	41513000	30734000	14682000	16052000	49109	2485	46234	296275;296276;296277;296278;296279	397857;397858;397859;397860	397859			2	
TALAEAELEYNPEHVSR	0	Unmodified	1927.9276	0.92756992	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.593	2	9	3							2	4	3	5	54.134	53.386	2;3	1.7086E-40	47159	160511_QHF_FH_JSI10i_2	164.81	150.25			0.95474	0.96299	29.434	12	4	Median	0.73543	0.6378	22.258	2	2	Median	0.68668	0.85937	28.158	3	1	Median	0.95295	0.95959	7.6265	3	0	Plateau	0.99755	1.0571	29.872	4	1	Median	1204400000	662410000	541960000	34837000	20158000	14679000	384920000	238250000	146660000	419130000	215240000	203890000	365480000	188760000	176720000	49110	4983	46235	296280;296281;296282;296283;296284;296285;296286;296287;296288;296289;296290;296291;296292;296293	397861;397862;397863;397864;397865;397866;397867;397868;397869;397870;397871;397872;397873;397874;397875;397876;397877	397874			17	
TALALAIAQELGSK	1	Unmodified	1384.7926	0.79257999	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		8	8						4	5	5	5	5	93.274	91.226	2;3	1.2377E-65	77118	160511_QHF_FH_JSI9i_3	280.56	256.27			0.93681	0.92696	14.84	19	1	Median	1.1218	0.97276	15.767	5	0	Median	0.85829	1.0302	7.2077	5	0	Median	0.93681	0.9109	18.893	5	1	Median	0.80737	0.85815	18.786	4	0	Median	3353300000	1545500000	1807800000	524830000	201640000	323190000	741700000	380420000	361280000	1063800000	478400000	585400000	1023000000	485060000	537950000	49111	5496	46236	296294;296295;296296;296297;296298;296299;296300;296301;296302;296303;296304;296305;296306;296307;296308;296309;296310;296311;296312;296313	397878;397879;397880;397881;397882;397883;397884;397885;397886;397887;397888;397889;397890;397891;397892;397893;397894;397895;397896;397897;397898;397899;397900;397901;397902;397903;397904;397905;397906;397907;397908;397909;397910;397911;397912;397913;397914;397915;397916;397917;397918;397919;397920;397921;397922;397923;397924;397925;397926;397927;397928;397929;397930	397899			53	
TALALEVGDIVK	1	Unmodified	1227.7075	0.70745338	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	79.913	79.325	2	0.00013899	72281	160511_QHF_FH_JSI12i_1	100.88	82.567			0.99744	1.0257	14.019	6	0	Median	1.2767	1.1265	NaN	1	0	Median	0.85723	0.99188	NaN	1	0	Median	0.96535	0.94501	13.305	2	0	Median	1.0657	1.1521	18.162	2	0	Median	229110000	110810000	118290000	33008000	13018000	19990000	38639000	21686000	16953000	73193000	38280000	34913000	84267000	37829000	46438000	49112	1583	46237	296314;296315;296316;296317;296318;296319	397931;397932;397933;397934;397935;397936;397937	397934			7	
TALALEVGELVK	1	Unmodified	1241.7231	0.72310344	1582	P46108	CRK	Adapter molecule crk	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.624	83.796	2	0.00026927	73632	160511_QHF_FH_JSI11i_2	91.855	80.365			1.1159	1.1693	5.4757	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2429	1.2155	NaN	1	1	Median	1.0018	1.1249	NaN	1	1	Median	28850000	13711000	15139000	0	0	0	0	0	0	13558000	5951800	7605900	15292000	7758900	7533600	49113	1582	46238	296320;296321	397938;397939	397939			2	
TALAMGADR	0	Unmodified	904.44365	0.44365089	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.04	4	5	2				3			3	4	3	4	23.948	21.422	2	2.4067E-05	18434	160511_QHF_FH_JSI9i_2	105.14	50.931			0.99011	1.0558	24.544	14	1	Median	1.3237	1.1128	33.107	3	0	Median	0.90964	1.0981	12.32	4	0	Median	0.9954	1.0284	22.318	3	0	Median	0.95301	1.0208	35.992	4	1	Median	2586700000	1319800000	1266900000	549070000	229040000	320040000	591750000	312780000	278970000	615580000	345440000	270130000	830260000	432530000	397730000	49114	1473	46239	296322;296323;296324;296325;296326;296327;296328;296329;296330;296331;296332;296333;296334;296335	397940;397941;397942;397943;397944;397945;397946;397947;397948;397949;397950;397951;397952;397953;397954;397955;397956;397957;397958;397959;397960;397961;397962	397958			23	
TALAMGADR	0	Oxidation (M)	920.43857	0.43856552	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	6	5.66		2					1					2	1	19.689	16.634	2	0.011443	6257	160513_QHF_FH_JSI11Kac_4	52.716	25.191			1.527	1.5323	19.38	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3607	1.3664	16.206	2	1	Median	1.5837	1.7912	NaN	1	0	Median	171100000	77313000	93784000	0	0	0	0	0	0	122240000	57126000	65117000	48854000	20187000	28667000	49115	1473	46239	296336;296337;296338	397963;397964;397965	397964		1145	3	
TALDAFGR	0	Unmodified	849.43447	0.43446642	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	37.302	36.585	2	0.0016363	31097	160511_QHF_FH_JSI12i_2	86.833	56.648			0.90628	1.0047	9.7091	7	0	Median	1.186	1.0132	NaN	1	0	Median	0.79039	0.95551	0.58264	2	0	Median	1.1155	1.1212	1.5859	2	0	Median	0.86499	0.92501	11.686	2	0	Median	1051200000	535020000	516190000	152360000	67140000	85222000	262380000	149980000	112390000	377550000	184700000	192850000	258930000	133200000	125730000	49116	1747	46240	296339;296340;296341;296342;296343;296344;296345	397966;397967;397968;397969;397970;397971;397972;397973;397974;397975	397968			10	
TALEMVQAAGTDR	0	Unmodified	1361.6609	0.66091389	959	P0DPB6			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	4	2	44.327	43.545	2	7.8671E-05	37996	160511_QHF_FH_JSI9i_2	99.539	86.419			0.90655	0.94495	19.206	9	2	Median	1.3012	1.0862	34.899	2	0	Median	0.82097	0.97333	16.76	2	0	Median	0.98873	0.99803	19.762	3	2	Median	0.80764	0.86614	12.315	2	0	Median	643020000	322220000	320800000	97393000	40272000	57121000	160310000	85071000	75239000	256740000	126140000	130600000	128580000	70739000	57842000	49117	959	46241	296346;296347;296348;296349;296350;296351;296352;296353;296354;296355	397976;397977;397978;397979;397980;397981;397982;397983;397984;397985;397986;397987	397982			10	
TALFEEISR	0	Unmodified	1064.5502	0.55022446	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	9.8	6.37		2						3		1	1	1	2	63.082	56.302	2	0.0019951	48185	160511_QHF_FH_JSI12i_2	66.621	49.845			1.1714	1.1804	10.346	5	0	Median	1.3314	1.1019	NaN	1	0	Median	0.83951	0.98633	NaN	1	0	Median	1.2179	1.2316	NaN	1	0	Median	1.1115	1.2308	5.9177	2	0	Median	214270000	99537000	114740000	2115800	986290	1129500	2599000	1348400	1250600	111790000	48060000	63732000	97767000	49142000	48626000	49118	2560	46242	296356;296357;296358;296359;296360	397988;397989;397990;397991	397988			4	
TALGVAELTVTDLFR	0	Unmodified	1604.8774	0.87737225	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	101.7	101.61	2	6.2633E-40	87456	160511_QHF_FH_JSI12i_2	250.48	209.32			1.1308	1.2816	10.137	4	3	Median	1.283	1.0914	NaN	1	1	Median	1.0897	1.336	5.6078	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1323	1.2793	NaN	1	0	Median	504140000	233680000	270460000	95783000	41790000	53993000	270630000	127050000	143580000	0	0	0	137720000	64840000	72883000	49119	3649	46243	296361;296362;296363;296364;296365	397992;397993;397994;397995;397996	397992			5	
TALHGVK	1	Unmodified	724.42317	0.42317345	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.1626	7.2114	2	0.019546	5006	160511_QHF_FH_JSI11i_3	58.167	39.362			1.3817	1.3491	39.876	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0584	1.0176	NaN	1	0	Median	1.8037	1.7885	NaN	1	0	Median	531010000	211200000	319810000	0	0	0	0	0	0	177070000	81156000	95915000	353940000	130040000	223900000	49120	5380	46244	296366;296367	397997;397998	397997			2	
TALHGVKWPQSNPK	2	Acetyl (K)	1603.8471	0.84707518	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.574	42.849	3	0.0014822	23215	160513_QHF_FH_JSI11Kac_6	68.168	42.45			0.054557	0.053335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.054557	0.053335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6174800	5978400	196330	0	0	0	0	0	0	6174800	5978400	196330	0	0	0	49121	5380	46245	296368	397999	397999	3376		1	
TALHLATEMEELGLVTHLVTK	1	Unmodified	2305.2352	0.23516825	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.16	101.18	4	2.608E-18	87802	160511_QHF_FH_JSI12i_3	148.91	143.58			0.85261	0.84565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85261	0.84565	NaN	1	0	Median	153000000	71983000	81021000	0	0	0	0	0	0	0	0	0	153000000	71983000	81021000	49122	2157	46246	296369	398000;398001	398001			2	
TALHSGEDFQTLLFER	0	Unmodified	1862.9163	0.91627696	4517	Q9BXI9	C1QTNF6	Complement C1q tumor necrosis factor-related protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	1	2	1	76.653	76.211	2;3	6.7121E-08	67914	160511_QHF_FH_JSI11i_3	116.35	104.58			1.0677	1.1189	10.35	4	1	Median	1.2929	1.1272	NaN	1	0	Median	0.97035	1.2053	NaN	1	0	Median	1.1748	1.1107	NaN	1	1	Median	0.93041	0.94436	NaN	1	0	Median	320710000	139730000	180980000	33640000	13707000	19933000	60565000	31248000	29317000	124860000	44997000	79859000	101650000	49779000	51873000	49123	4517	46247	296370;296371;296372;296373;296374	398002;398003;398004;398005	398002			4	
TALIAAAYMGHR	0	Unmodified	1273.6601	0.66012603	5400	Q9ULJ7	ANKRD50	Ankyrin repeat domain-containing protein 50	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			56.895	48.384	3	0.00032738	26639	160513_QHF_FH_JSI10Kac_6	55.776	49.173			0.71509	0.83144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71509	0.83144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11907000	4631400	7275600	0	0	0	11907000	4631400	7275600	0	0	0	0	0	0	49124	5400	46248	296375	398006	398006			1	
TALIHDGLAR	0	Unmodified	1065.5931	0.59309232	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.11	1	8	14					2	8	9	9	8	7	32.712	29.22	2;3	1.1603E-19	24395	160511_QHF_FH_JSI11i_3	163.38	142.76			0.94699	1.0031	14.776	31	0	Median	1.1576	0.97721	18.104	8	0	Median	0.87853	1.0145	9.0874	9	0	Median	0.95381	0.91853	16.84	7	0	Median	0.95301	1.0053	17.633	7	0	Median	23653000000	11252000000	12401000000	2880800000	1244500000	1636200000	4280200000	2230800000	2049400000	8697900000	4163000000	4534900000	7794400000	3614200000	4180200000	49125	1258	46249	296376;296377;296378;296379;296380;296381;296382;296383;296384;296385;296386;296387;296388;296389;296390;296391;296392;296393;296394;296395;296396;296397;296398;296399;296400;296401;296402;296403;296404;296405;296406;296407;296408	398007;398008;398009;398010;398011;398012;398013;398014;398015;398016;398017;398018;398019;398020;398021;398022;398023;398024;398025;398026;398027;398028;398029;398030;398031;398032;398033;398034;398035;398036;398037;398038;398039;398040;398041;398042;398043;398044;398045;398046;398047;398048;398049;398050;398051;398052;398053;398054;398055;398056;398057;398058;398059;398060;398061;398062;398063;398064;398065;398066;398067;398068;398069;398070;398071;398072	398008			66	
TALILHLQK	1	Unmodified	1035.6441	0.64406526	3454	Q8IY21	DDX60	Probable ATP-dependent RNA helicase DDX60	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8.2	6.37			3						2	2	2		1	51.563	47.336	3	4.2586E-05	39556	160511_QHF_FH_JSI10i_3	86.67	70.13			1.7577	1.441	35.24	5	0	Median	1.7639	1.4674	2.5706	2	0	Median	1.3385	1.5526	48.129	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82879	0.85235	NaN	1	0	Median	108540000	52079000	56460000	46398000	19807000	26591000	38450000	17027000	21423000	0	0	0	23691000	15244000	8446700	49126	3454	46250	296409;296410;296411;296412;296413	398073;398074;398075;398076;398077;398078	398073			5	
TALINSTGEEVAMR	0	Unmodified	1490.7399	0.73989249	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	4.71	4	4	5				3			3	5	4	4	52.544	49.531	2	2.6679E-98	42504	160511_QHF_FH_JSI12i_2	261.75	234.42			0.87836	0.91374	8.2359	14	1	Median	1.2604	1.0334	7.421	3	0	Plateau	0.72964	0.87179	2.4338	4	1	Median	0.95253	0.8535	8.9682	4	0	Linear	0.84847	0.89143	10.192	3	0	Plateau	4090300000	2052700000	2037600000	886500000	344210000	542290000	993330000	555220000	438100000	1285200000	634310000	650870000	925340000	519000000	406340000	49127	791	46251	296414;296415;296416;296417;296418;296419;296420;296421;296422;296423;296424;296425;296426;296427;296428;296429	398079;398080;398081;398082;398083;398084;398085;398086;398087;398088;398089;398090;398091;398092;398093;398094;398095;398096;398097;398098;398099;398100;398101;398102;398103;398104;398105	398084			27	
TALINSTGEEVAMR	0	Oxidation (M)	1506.7348	0.73480712	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.37	4	1					4			2	2	2	3	44.393	38.922	2	0.00012736	34792	160511_QHF_FH_JSI9i_1	76.165	63.588			1.3817	1.5135	43.397	8	5	Median	2.4126	2.0416	NaN	1	1	Median	1.0552	1.2356	63.033	2	1	Median	1.3677	1.348	44.073	2	1	Median	1.1581	1.2443	51.993	3	2	Median	739100000	241860000	497240000	29432000	11375000	18058000	217960000	67250000	150710000	290500000	98907000	191590000	201200000	64325000	136870000	49128	791	46251	296430;296431;296432;296433;296434;296435;296436;296437;296438	398106;398107;398108;398109;398110;398111;398112;398113;398114;398115	398112		307	10	
TALINSTGEEVAMRK	1	Oxidation (M)	1634.8298	0.82977013	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	1	1			By MS/MS		3	0			2									2		33.06	33.06	2;3	0.0033032	28614	160511_QHF_FH_JSI11i_3	47.217	42.901			1.1081	1.0501	9.9742	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1081	1.0501	9.9742	2	0	Median	NaN	NaN	NaN	0	0	Median	327710000	157590000	170120000	0	0	0	0	0	0	327710000	157590000	170120000	0	0	0	49129	791	46252	296439;296440	398116;398117;398118;398119	398116		307	4	
TALINSTGEEVAMRK	1	Unmodified	1618.8349	0.83485551	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.16	3	8	7					4	4	5	7	7	7	45.016	41.327	2;3	2.0042E-65	36389	160511_QHF_FH_JSI11i_3	262.43	229.34			1.1302	1.1427	13.787	25	0	Median	1.3042	1.1382	8.8511	5	0	Median	0.88348	1.0716	13.191	7	0	Median	1.2217	1.197	10.434	7	0	Median	1.0445	1.1247	17.139	6	0	Median	11824000000	5634800000	6188800000	2080400000	971100000	1109300000	3944200000	2038000000	1906300000	4130800000	1815100000	2315700000	1668200000	810610000	857640000	49130	791	46252	296441;296442;296443;296444;296445;296446;296447;296448;296449;296450;296451;296452;296453;296454;296455;296456;296457;296458;296459;296460;296461;296462;296463;296464;296465;296466	398120;398121;398122;398123;398124;398125;398126;398127;398128;398129;398130;398131;398132;398133;398134;398135;398136;398137;398138;398139;398140;398141;398142;398143;398144;398145;398146;398147;398148;398149;398150;398151;398152;398153;398154;398155;398156;398157;398158;398159;398160;398161;398162;398163;398164;398165;398166;398167;398168;398169;398170;398171;398172;398173;398174;398175;398176	398127			56	
TALLAIIGFMPTK	1	Unmodified	1374.7945	0.79449425	5563	Q9Y385	UBE2J1	Ubiquitin-conjugating enzyme E2 J1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	95.826	87.418	2	5.3239E-12	49169	160513_QHF_FH_JSI11Kac_6	143.97	113.41			0.97332	0.96975	21.679	4	1	Median	1.2988	1.1192	NaN	1	1	Median	1.0603	1.2235	NaN	1	0	Median	0.8935	0.84028	NaN	1	0	Median	0.7434	0.78259	NaN	1	0	Median	421840000	221600000	200240000	86297000	52293000	34004000	57336000	27222000	30113000	209600000	99402000	110200000	68604000	42682000	25922000	49131	5563	46253	296467;296468;296469;296470	398177;398178;398179;398180	398177			4	
TALLDAAGVASLLTTAEVVVTEIPK	1	Unmodified	2481.3942	0.39417132	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.7	5.94	7	74	18	2	2	2	1		30	22	36	51	27	106.12	104.17	2;3;4	0	92103	160511_QHF_FH_JSI9i_2	387.71	374.3			0.95652	0.94054	23.293	106	29	Median	1.1061	0.91529	15.371	19	3	Median	0.70878	0.85245	35.232	26	9	Median	1.0248	0.99571	18.67	42	14	Median	0.88206	0.91864	19.804	19	3	Median	14925000000	7643000000	7282400000	6088000000	3012000000	3076100000	2956700000	1658100000	1298600000	4125800000	2037300000	2088400000	1755000000	935670000	819300000	49132	980	46254	296471;296472;296473;296474;296475;296476;296477;296478;296479;296480;296481;296482;296483;296484;296485;296486;296487;296488;296489;296490;296491;296492;296493;296494;296495;296496;296497;296498;296499;296500;296501;296502;296503;296504;296505;296506;296507;296508;296509;296510;296511;296512;296513;296514;296515;296516;296517;296518;296519;296520;296521;296522;296523;296524;296525;296526;296527;296528;296529;296530;296531;296532;296533;296534;296535;296536;296537;296538;296539;296540;296541;296542;296543;296544;296545;296546;296547;296548;296549;296550;296551;296552;296553;296554;296555;296556;296557;296558;296559;296560;296561;296562;296563;296564;296565;296566;296567;296568;296569;296570;296571;296572;296573;296574;296575;296576;296577;296578;296579;296580;296581;296582;296583;296584;296585;296586;296587;296588;296589;296590;296591;296592;296593;296594;296595;296596;296597;296598;296599;296600;296601;296602;296603;296604;296605;296606	398181;398182;398183;398184;398185;398186;398187;398188;398189;398190;398191;398192;398193;398194;398195;398196;398197;398198;398199;398200;398201;398202;398203;398204;398205;398206;398207;398208;398209;398210;398211;398212;398213;398214;398215;398216;398217;398218;398219;398220;398221;398222;398223;398224;398225;398226;398227;398228;398229;398230;398231;398232;398233;398234;398235;398236;398237;398238;398239;398240;398241;398242;398243;398244;398245;398246;398247;398248;398249;398250;398251;398252;398253;398254;398255;398256;398257;398258;398259;398260;398261;398262;398263;398264;398265;398266;398267;398268;398269;398270;398271;398272;398273;398274;398275;398276;398277;398278;398279;398280;398281;398282;398283;398284;398285;398286;398287;398288;398289;398290;398291;398292;398293;398294;398295;398296;398297;398298;398299;398300;398301;398302;398303;398304;398305;398306;398307;398308;398309;398310;398311;398312;398313;398314;398315;398316;398317;398318;398319;398320;398321;398322;398323;398324;398325;398326;398327;398328;398329;398330;398331;398332;398333;398334;398335;398336;398337;398338;398339;398340;398341;398342;398343;398344;398345;398346;398347;398348;398349;398350;398351;398352;398353;398354;398355;398356;398357;398358;398359;398360;398361;398362;398363;398364;398365;398366;398367;398368;398369;398370;398371;398372;398373;398374;398375;398376;398377;398378;398379;398380;398381;398382;398383;398384;398385;398386	398252			203	
TALLDAAGVASLLTTAEVVVTEIPKEEK	2	Unmodified	2867.5743	0.57432053	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	3	4	4	103.76	103.69	3;4	1.79E-83	91370	160511_QHF_FH_JSI11i_2	238.42	235.91			0.92764	0.84965	26.285	13	2	Median	0.7737	0.66755	7.6518	2	0	Median	0.60648	0.73748	7.6604	3	1	Median	0.97609	0.89741	16.405	4	0	Median	1.1556	1.2226	8.8969	4	1	Median	580000000	291780000	288230000	44965000	24472000	20493000	42111000	23944000	18168000	181190000	94559000	86632000	311740000	148800000	162930000	49133	980	46255	296607;296608;296609;296610;296611;296612;296613;296614;296615;296616;296617;296618;296619	398387;398388;398389;398390;398391;398392;398393;398394;398395;398396;398397;398398;398399;398400;398401;398402;398403;398404;398405;398406;398407	398399			21	
TALLGLTK	1	Unmodified	815.51165	0.5116541	4429	Q9BTZ2	DHRS4	Dehydrogenase/reductase SDR family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	49.377	48.557	2	0.002392	41771	160511_QHF_FH_JSI12i_2	80.438	26.884			1.1557	1.0531	21.429	7	0	Median	1.2242	1.0531	NaN	1	0	Median	0.81714	0.96995	3.8502	2	0	Median	1.2686	1.2809	5.5563	2	0	Median	1.186	1.2435	41.259	2	0	Median	246710000	117590000	129110000	44695000	21347000	23348000	60758000	30776000	29982000	69159000	30151000	39008000	72096000	35321000	36775000	49134	4429	46256	296620;296621;296622;296623;296624;296625;296626	398408;398409;398410;398411;398412;398413;398414	398409			7	
TALLHLLLLR	0	Unmodified	1161.7598	0.75976372	3418	Q8IWB1	ITPRIP	Inositol 1,4,5-trisphosphate receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.311	77.418	3	3.4963E-18	43788	160513_QHF_FH_JSI10Kac_6	167.12	159.48			0.8301	0.97927	33.31	3	0	Median	1.2909	1.1176	NaN	1	0	Median	0.8301	0.97927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.55369	0.59432	NaN	1	0	Median	243120000	130250000	112870000	47735000	17551000	30185000	169000000	94642000	74355000	0	0	0	26385000	18060000	8325800	49135	3418	46257	296627;296628;296629;296630	398415;398416;398417;398418;398419;398420	398420			6	
TALLPSDSVFAEER	0	Unmodified	1533.7675	0.76748745	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.86	0.35	1	6								1	1	3	2	71.652	70.819	2	0.0044684	62468	160511_QHF_FH_JSI9i_2	54.7	39.434			0.85438	0.89799	16.294	7	5	Median	1.1577	1.0035	NaN	1	0	Median	0.6924	0.8417	NaN	1	0	Median	0.89287	0.89799	22.702	3	3	Median	0.79314	0.85873	11.003	2	2	Median	233660000	123470000	110190000	34019000	15183000	18836000	36945000	26619000	10326000	110390000	52941000	57447000	52311000	28731000	23580000	49136	2584	46258	296631;296632;296633;296634;296635;296636;296637	398421;398422;398423;398424;398425;398426;398427	398425			7	
TALLSLFGIPLWYHSQSPR	0	Unmodified	2185.1684	0.16840932	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		96.573	87.337	3	1.4775E-16	49688	160513_QHF_FH_JSI11Kac_6	149.47	131.88			1.0306	0.91432	7.8535	2	2	Median	1.1469	0.96653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92613	0.86493	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2572800000	1380900000	1191900000	1065400000	538090000	527330000	0	0	0	1507400000	842830000	664570000	0	0	0	49137	5290	46259	296638;296639	398428;398429	398428			2	
TALMSLFGIPLWYFSQSPR	0	Unmodified	2213.1343	0.134332	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.36	92.912	3	1.357E-25	55653	160513_QHF_FH_JSI10Kac_6	153.86	149.59			1.1627	1.1716	16.182	2	1	Median	1.5331	1.3136	NaN	1	1	Median	0.88174	1.0449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	482040000	244740000	237310000	88420000	36560000	51860000	393620000	208180000	185450000	0	0	0	0	0	0	49138	620	46260	296640;296641	398430;398431	398431			2	
TALNLFFK	1	Unmodified	952.5382	0.53820321	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	79.096	75.262	2	1.6803E-06	37933	160513_QHF_FH_JSI12Kac_6	133.12	97.236			1.0204	0.93807	25.647	13	0	Median	1.1344	0.94956	5.2873	4	0	Median	0.70136	0.86956	52.452	3	0	Median	0.86522	0.86078	19.541	3	0	Median	0.85135	0.93807	14.633	3	0	Median	2924900000	1364800000	1560100000	411800000	181440000	230360000	625270000	315220000	310050000	754350000	373780000	380580000	1133500000	494330000	639130000	49139	1805	46261	296642;296643;296644;296645;296646;296647;296648;296649;296650;296651;296652;296653;296654	398432;398433;398434;398435;398436;398437;398438;398439;398440;398441;398442;398443;398444;398445;398446;398447;398448;398449;398450;398451;398452;398453;398454;398455;398456	398453			25	
TALNNTLDLSNVR	0	Unmodified	1429.7525	0.75250609	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	57.497	57.007	2	0.0018223	51917	160511_QHF_FH_JSI12i_1	60.161	45.482			1.1906	1.3103	1.6822	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0883	1.288	NaN	1	0	Median	1.4023	1.3147	NaN	1	0	Median	1.1906	1.2716	NaN	1	0	Median	164230000	75742000	88491000	0	0	0	55847000	26712000	29136000	63890000	28777000	35113000	44495000	20253000	24243000	49140	2302	46262	296655;296656;296657	398457	398457			1	
TALPAQSAATLPAR	0	Unmodified	1366.7569	0.75686319	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.8	5.11	3	1					1			2	1	2		46.994	44.204	2	0.00041955	39479	160511_QHF_FH_JSI9i_1	74.21	57.44			1.072	0.98899	31.112	5	0	Median	0.96507	0.79548	17.53	2	0	Median	0.83077	0.98899	NaN	1	0	Median	1.3905	1.3539	26.801	2	0	Median	NaN	NaN	NaN	0	0	Median	250270000	113630000	136640000	72831000	34433000	38399000	82567000	40359000	42208000	94871000	38836000	56035000	0	0	0	49141	2162	46263	296658;296659;296660;296661;296662	398458;398459;398460;398461	398461			2	
TALPFNR	0	Unmodified	817.44464	0.44463717	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							1	3	1		37.94	36.952	2	0.0071384	30781	160511_QHF_FH_JSI10i_3	76.847	39.201			1.0289	0.98835	8.9832	3	3	Plateau	1.4228	1.1534	NaN	1	1	Median	1.0008	1.1315	NaN	1	1	Median	1.0289	0.97864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	327550000	165890000	161660000	91127000	46352000	44775000	107700000	56232000	51471000	128720000	63306000	65413000	0	0	0	49142	3799	46264	296663;296664;296665;296666;296667	398462;398463;398464;398465;398466	398464			5	
TALPNMNR	0	Unmodified	915.45964	0.45963531	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	27.276	26.576	2	0.010043	22215	160511_QHF_FH_JSI12i_3	55.441	27.334			0.74504	0.69454	11.229	2	0	Median	0.73513	0.64152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75508	0.75194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56233000	35115000	21118000	27290000	17643000	9646700	0	0	0	28944000	17472000	11471000	0	0	0	49143	5745	46265	296668;296669;296670	398467;398468	398468			2	
TALPTSGSSAGELELLAGEVPAR	0	Unmodified	2225.1539	0.15394104	5727	Q9Y6I3	EPN1	Epsin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	2	2	90.451	90.115	2;3	1.5367E-08	82084	160511_QHF_FH_JSI12i_1	136.01	115.91			1.0573	1.1352	25.043	4	3	Median	NaN	NaN	NaN	0	0	Median	1.1152	1.3061	NaN	1	0	Median	1.4853	1.4209	NaN	1	1	Median	0.91222	0.90314	12.509	2	2	Median	84626000	37991000	46635000	0	0	0	36070000	17074000	18996000	20512000	4907300	15605000	28044000	16010000	12034000	49144	5727	46266	296671;296672;296673;296674;296675;296676	398469;398470;398471;398472;398473;398474	398472			6	
TALQEEIK	1	Unmodified	930.50221	0.50221163	1600;3340	P46940;Q86VI3	IQGAP1;IQGAP3	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7.67	6.34	2	1					3			1	2	3		31.159	26.296	2	0.00018651	22809	160511_QHF_FH_JSI9i_1	110.87	34.394			0.88583	0.95088	23.586	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94921	1.1235	NaN	1	1	Median	0.82669	0.80481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	851670000	449650000	402020000	0	0	0	6503700	2816000	3687700	845170000	446840000	398330000	0	0	0	49145	1600;3340	46267	296677;296678;296679;296680;296681;296682	398475;398476;398477;398478;398479;398480;398481	398480			7	
TALQPLK	1	Unmodified	769.46979	0.46978929	3008	Q5ZPR3	CD276	CD276 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	1	2	27.333	25.398	2	0.010853	22218	160511_QHF_FH_JSI10i_1	73.039	49.067			1.0814	1.1357	28.23	7	0	Median	1.5255	1.2965	54.468	2	0	Median	0.96199	1.1611	29.231	2	0	Median	1.5694	1.4803	NaN	1	0	Median	0.99629	1.0628	9.3765	2	0	Median	346230000	155980000	190250000	104610000	45088000	59520000	124890000	70878000	54016000	66431000	17343000	49087000	50296000	22670000	27626000	49146	3008	46268	296683;296684;296685;296686;296687;296688;296689	398482;398483;398484;398485;398486	398483			5	
TALSIALK	1	Unmodified	815.51165	0.5116541	2953	Q5T7N3	KANK4	KN motif and ankyrin repeat domain-containing protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.177	48.779	2	0.024604	41766	160511_QHF_FH_JSI12i_2	42.869	3.3224			0.85128	0.92886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85128	0.92886	NaN	1	0	Median	38884000	20739000	18144000	0	0	0	0	0	0	0	0	0	38884000	20739000	18144000	49147	2953	46269	296690	398487	398487			1	
TALTTTISSR	0	Unmodified	1049.5717	0.57168818	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	5.08	2	4	1				2			1	3	4	1	31.04	28.442	2	3.2753E-10	24015	160511_QHF_FH_JSI11i_2	140.11	125.27			0.90218	0.94829	21.992	9	1	Median	1.6126	1.3676	NaN	1	1	Median	0.90218	1.0584	6.9482	3	0	Median	0.8766	0.88153	23.195	4	0	Median	0.77048	0.86151	NaN	1	0	Median	984300000	501400000	482900000	163710000	73571000	90139000	257130000	137930000	119200000	440580000	228850000	211730000	122870000	61045000	61828000	49148	4456	46270	296691;296692;296693;296694;296695;296696;296697;296698;296699	398488;398489;398490;398491;398492;398493;398494;398495;398496;398497	398495			10	
TALTYYLDITNPPR	0	Unmodified	1636.8461	0.84607213	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.77	3.85	4	8							1	2	3	4	4	83.787	82.658	2;3	5.4576E-30	73455	160511_QHF_FH_JSI9i_2	191.53	176.84			0.95768	0.98785	6.3563	10	1	Median	1.1366	0.96401	1.381	2	0	Median	0.76674	0.92982	8.0736	3	1	Plateau	1.0025	0.97265	5.7154	3	0	Median	0.95768	1.0699	1.4215	2	0	Median	709570000	363350000	346220000	138220000	67629000	70594000	152870000	79237000	73631000	234250000	116640000	117610000	184230000	99846000	84388000	49149	1100	46271	296700;296701;296702;296703;296704;296705;296706;296707;296708;296709;296710;296711;296712	398498;398499;398500;398501;398502;398503;398504;398505;398506;398507;398508;398509;398510;398511;398512;398513;398514;398515;398516;398517;398518;398519;398520;398521	398511			24	
TALVANTSNMPVAAR	0	Unmodified	1514.7875	0.78751139	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	49.41	48.417	2	1.2105E-09	41738	160511_QHF_FH_JSI11i_2	143.97	117.86			0.84433	0.92409	29.916	3	1	Median	1.71	1.4223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80602	0.80048	NaN	1	0	Median	0.84433	0.92409	NaN	1	0	Median	93459000	44686000	48773000	35242000	12537000	22705000	0	0	0	43498000	23990000	19508000	14718000	8157900	6560300	49150	1479	46272	296713;296714;296715	398522;398523;398524;398525;398526	398526			5	
TALVERDDFSSGTSSR	0	Unmodified	1726.8122	0.81220581	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		32.443	31.849	3	3.2917E-05	27701	160511_QHF_FH_JSI9i_2	88.427	76.281			1.1795	1.0952	10.384	4	0	Median	1.3526	1.1544	NaN	1	0	Median	0.80617	0.98146	NaN	1	0	Median	1.1795	1.1337	12.328	2	0	Median	NaN	NaN	NaN	0	0	Median	426290000	201470000	224830000	113220000	51120000	62100000	160710000	90210000	70499000	152360000	60136000	92228000	0	0	0	49151	1558	46273	296716;296717;296718;296719	398527;398528;398529;398530;398531	398529			5	
TALYNYIFAK	1	Unmodified	1202.6336	0.63356015	2896	Q5JPH6	EARS2	Probable glutamate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	79.623	78.771	2	0.00087087	70379	160511_QHF_FH_JSI11i_3	84.498	61.178			1.5158	1.386	17.576	7	3	Median	1.847	1.5799	NaN	1	0	Median	0.94489	1.101	NaN	1	0	Median	1.6417	1.5676	17.415	2	1	Median	1.2031	1.3161	16.93	3	2	Median	153170000	63097000	90072000	8488800	2782000	5706900	10165000	5617200	4547600	63446000	26836000	36610000	71069000	27861000	43208000	49152	2896	46274	296720;296721;296722;296723;296724;296725;296726	398532;398533;398534;398535;398536;398537;398538	398533			6	
TAMAAAK	1	Unmodified	662.34215	0.34214594	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	3.18	4	5	4				1			3	3	5	3	6.5897	5.7536	2	0.0084038	4044	160511_QHF_FH_JSI12i_2	83.614	83.614			1.0963	1.154	26.256	14	3	Median	1.2821	1.0769	31.611	3	1	Median	1.0581	1.2325	32.913	3	2	Median	1.1478	1.2054	23.124	5	0	Median	1.2617	1.3588	31.522	3	0	Plateau	15257000000	6951800000	8305500000	3056300000	1377500000	1678800000	3785600000	1877200000	1908500000	4384400000	1778400000	2606000000	4031000000	1918700000	2112300000	49153	2120	46275	296727;296728;296729;296730;296731;296732;296733;296734;296735;296736;296737;296738;296739;296740	398539;398540;398541;398542;398543;398544;398545;398546;398547;398548;398549;398550;398551;398552;398553;398554;398555;398556;398557	398543			19	
TAMAAAKAPTK	2	Acetyl (K)	1101.5852	0.58522975	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					2	1	1	29.7	21.303	2	0.0070021	12467	160513_QHF_FH_JSI10Kac_3	81.017	61.922			5.0935	5.4784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.0935	5.4784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2506500	1966200	540230	0	0	0	1887600	1887600	0	618870	78643	540230	0	0	0	49154	2120	46276	296741;296742;296743;296744	398558;398559;398560;398561	398561	2221		4	
TAMAAAKAPTK	2	Acetyl (K);Oxidation (M)	1117.5801	0.58014438	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	0	1	1				By MS/MS	12	0					1								1	16.99	9.9483	2	0.039412	5996	160513_QHF_FH_JSI12Kac_2	36.424	33.016			0.57272	0.64795	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57272	0.64795	NaN	1	0	Median	1046000	595620	450390	0	0	0	0	0	0	0	0	0	1046000	595620	450390	49155	2120	46276	296745	398562	398562	2221		1	
TAMDQALQWLEDK	1	Unmodified	1547.729	0.72899346	949	P0CG30;P0CG29	GSTT2B;GSTT2	Glutathione S-transferase theta-2B;Glutathione S-transferase theta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	91.702	91.19	2	4.0439E-06	80247	160511_QHF_FH_JSI9i_2	123.84	110.48			1.0918	1.2029	9.8028	4	3	Median	1.6132	1.3781	NaN	1	1	Median	1.0326	1.2449	NaN	1	1	Median	1.1098	1.0972	NaN	1	0	Median	1.0741	1.1623	NaN	1	1	Median	206940000	94310000	112630000	59886000	21140000	38746000	56023000	29690000	26333000	47991000	23434000	24557000	43039000	20046000	22993000	49156	949	46277	296746;296747;296748;296749;296750	398563;398564;398565;398566;398567	398565			5	
TAMEVEAPSKPAR	1	Unmodified	1385.6973	0.6972994	88	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	24.434	24.422	3	0.00011206	20758	160511_QHF_FH_JSI11i_3	76.262	64.788			0.90584	0.89329	29.537	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1712	1.1008	NaN	1	0	Median	0.70062	0.72491	NaN	1	1	Median	83134000	38623000	44512000	0	0	0	0	0	0	59001000	24289000	34712000	24133000	14334000	9799500	49157	88	46278	296751;296752	398568;398569;398570	398568			3	
TAMLFQFVNVLLQVLVHK	1	Unmodified	2099.1965	0.19653832	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.92	99.204	3	1.3697E-56	58746	160513_QHF_FH_JSI10Kac_6	196.64	187.11			1.1171	1.2874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1171	1.2874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58014000	28900000	29115000	0	0	0	58014000	28900000	29115000	0	0	0	0	0	0	49158	4214	46279	296753	398571	398571			1	
TAMLLALQR	0	Unmodified	1015.5848	0.58483582	3662	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15.7	0.471								1	2		2	1		57.61	47.991	2	0.025148	26370	160513_QHF_FH_JSI10Kac_6	49.358	12.338			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49159	3662	46280	296754;296755;296756	398572;398573;398574	398574			3	
TAMNVNDLFLAIAK	1	Unmodified	1519.8068	0.80684985	1931	P61020	RAB5B	Ras-related protein Rab-5B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	101.49	101.31	2	9.1013E-10	92118	160511_QHF_FH_JSI11i_1	105.13	87.325			0.80384	0.9073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80384	0.9073	NaN	1	1	Median	288190000	151370000	136820000	0	0	0	0	0	0	0	0	0	288190000	151370000	136820000	49160	1931	46281	296757;296758	398575;398576	398575			2	
TAMNVNEIFMAIAK	1	Unmodified	1551.7789	0.77892054	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.84	2	7	1						6	3	4	5	4	98.356	95.228	2;3	3.5223E-153	47134	160513_QHF_FH_JSI11Kac_6	293.71	276.24			1.0176	0.99787	22.224	14	2	Median	1.1748	0.98131	2.3566	3	0	Median	0.83362	0.99861	30.924	4	1	Median	1.0176	0.99789	27.762	4	0	Median	0.98727	1.101	19.9	3	1	Median	5402500000	2615200000	2787300000	1060000000	474420000	585580000	1331800000	655190000	676630000	1795700000	873740000	921950000	1215000000	611880000	603120000	49161	1727	46282	296759;296760;296761;296762;296763;296764;296765;296766;296767;296768;296769;296770;296771;296772;296773;296774	398577;398578;398579;398580;398581;398582;398583;398584;398585;398586;398587;398588;398589;398590;398591;398592;398593;398594;398595;398596;398597	398581			21	
TAMNVNEIFMAIAK	1	Oxidation (M)	1567.7738	0.77383516	1727	P51148	RAB5C	Ras-related protein Rab-5C	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.94	100.82	2	1.7497E-06	86566	160511_QHF_FH_JSI12i_2	134.99	118.08			0.57676	0.56303	47.119	4	2	Median	0.72101	0.62831	NaN	1	1	Median	0.36974	0.46439	NaN	1	1	Median	1.2674	1.3081	NaN	1	0	Median	0.46137	0.50453	NaN	1	0	Median	527530000	289480000	238040000	27254000	12391000	14863000	41272000	26720000	14552000	397190000	211300000	185900000	61808000	39076000	22732000	49162	1727	46282	296775;296776;296777;296778	398598;398599;398600;398601	398598		1415	4	
TAMSTPHVAEPAENEQDEQDENGAEASADLR	0	Oxidation (M)	3327.407	0.40695021	1270	P26038	MSN	Moesin	yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	3									1		2		39.819	39.213	3;4	9.3058E-33	35274	160511_QHF_FH_JSI11i_1	139.19	139.13			1.0928	0.98433	16.455	2	0	Median	1.0596	0.87621	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1269	1.1058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325800000	146060000	179740000	33597000	15078000	18519000	0	0	0	292200000	130980000	161220000	0	0	0	49163	1270	46283	296779;296780;296781	398602;398603;398604;398605	398603		902	4	
TAMSTPHVAEPAENEQDEQDENGAEASADLR	0	Unmodified	3311.412	0.41203559	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								3	1	1	1	48.271	47.248	3;4	1.7582E-22	41305	160511_QHF_FH_JSI10i_2	99.34	99.114			1.1383	1.1025	18.844	5	3	Median	1.4318	1.185	14.598	3	3	Plateau	1.1383	1.4383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91996	0.94873	NaN	1	0	Median	217450000	94791000	122660000	105450000	32236000	73211000	41126000	18429000	22697000	0	0	0	70874000	44126000	26748000	49164	1270	46283	296782;296783;296784;296785;296786;296787	398606;398607;398608;398609;398610;398611	398611			6	
TAMSTPHVAEPAENEQDEQDENGAEASADLRADAMAK	1	Unmodified	3898.6858	0.68576761	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	1	2	55.232	54.437	4	4.371E-80	49577	160511_QHF_FH_JSI12i_1	184.04	182.56			0.99036	1.0674	9.7203	6	0	Median	1.2417	1.0702	NaN	1	0	Median	0.93692	1.1054	10.777	2	0	Median	1.3361	1.3155	NaN	1	0	Median	0.9608	1.0543	1.3753	2	0	Median	715720000	376780000	338940000	79639000	44929000	34710000	295470000	159700000	135770000	101060000	38866000	62190000	239550000	133280000	106270000	49165	1270	46284	296788;296789;296790;296791;296792;296793	398612;398613;398614;398615;398616;398617;398618;398619;398620;398621;398622;398623;398624;398625;398626;398627;398628	398617			17	
TAMSTPHVAEPAENEQDEQDENGAEASADLRADAMAK	1	Oxidation (M)	3914.6807	0.68068223	1270	P26038	MSN	Moesin	yes	yes	0	0	1	1		By MS/MS		By MS/MS	1	0	2										1		1	48.958	48.413	4	3.4401E-25	43984	160511_QHF_FH_JSI12i_1	98.398	93.776			1.0276	1.1396	17.018	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86008	1.0104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2277	1.2853	NaN	1	1	Median	141060000	69119000	71945000	0	0	0	90357000	53428000	36930000	0	0	0	50707000	15691000	35015000	49166	1270	46284	296794;296795	398629;398630;398631	398629		902	3	
TANDMIHAENMR	0	Unmodified	1401.6129	0.61291784	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.32	5.28	1	10	8				2	4		6	6	6	7	26.913	23.627	2;3	3.8567E-23	20444	160511_QHF_FH_JSI10i_2	179.94	173.24			0.98047	1.031	29.325	21	2	Median	1.3375	1.1346	39.43	5	1	Median	0.75114	0.90979	25.494	5	0	Median	1.0312	1.0327	4.9799	4	0	Median	0.95948	1.0544	34.549	7	1	Median	6889100000	3305900000	3583200000	1176200000	488360000	687810000	1567600000	849690000	717930000	2403700000	1078700000	1325000000	1741700000	889180000	852540000	49167	1270	46285	296796;296797;296798;296799;296800;296801;296802;296803;296804;296805;296806;296807;296808;296809;296810;296811;296812;296813;296814;296815;296816;296817;296818;296819;296820	398632;398633;398634;398635;398636;398637;398638;398639;398640;398641;398642;398643;398644;398645;398646;398647;398648;398649;398650;398651;398652;398653;398654;398655;398656;398657;398658;398659;398660;398661;398662;398663;398664	398659			33	
TANDMIHAENMR	0	2 Oxidation (M)	1433.6027	0.60274709	1270	P26038	MSN	Moesin	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	24.536	23.663	2	0.0092255	20215	160511_QHF_FH_JSI9i_2	66.663	56.976			1.4446	1.0857	24.239	4	0	Linear	1.0112	0.88267	NaN	1	0	Median	0.80764	0.98868	NaN	1	0	Median	1.5525	1.5369	NaN	1	0	Median	1.1174	1.1923	NaN	1	0	Median	159230000	79318000	79910000	33576000	19148000	14428000	32993000	15192000	17801000	47818000	20768000	27050000	44842000	24210000	20632000	49168	1270	46285	296821;296822;296823;296824;296825	398665;398666	398666		903;904	2	
TANDMIHAENMR	0	Oxidation (M)	1417.6078	0.60783246	1270	P26038	MSN	Moesin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		14								3	3	3	5	22.156	21.258	2;3	2.9072E-05	19678	160511_QHF_FH_JSI11i_2	111.86	101.33			0.98278	1.0501	34.643	12	3	Median	0.98278	0.82781	5.0706	2	0	Median	0.94714	1.1463	40.559	3	1	Median	0.77304	0.77306	39.428	2	0	Median	1.0379	1.1674	26.476	5	2	Median	924420000	487260000	437150000	203020000	103680000	99336000	209380000	127680000	81695000	97027000	44441000	52585000	414990000	211460000	203530000	49169	1270	46285	296826;296827;296828;296829;296830;296831;296832;296833;296834;296835;296836;296837;296838;296839	398667;398668;398669;398670;398671;398672;398673;398674;398675;398676	398671		903;904	9	
TANEEEEIVHK	1	Unmodified	1297.615	0.61500956	3044	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.676	17.207	2	0.028061	14787	160511_QHF_FH_JSI12i_1	47.844	29.619			0.71808	0.75339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71808	0.75339	NaN	1	1	Median	77232000	46277000	30955000	0	0	0	0	0	0	0	0	0	77232000	46277000	30955000	49170	3044	46286	296840	398677	398677			1	
TANEGGSLLYEQLGYK	1	Unmodified	1741.8523	0.85227972	4207	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	65.674	65.021	2;3	6.0288E-40	59243	160511_QHF_FH_JSI12i_1	200.16	177.28			0.84719	0.94159	10.749	6	3	Linear	1.0063	0.82661	10.21	2	1	Median	0.81319	0.96359	NaN	1	0	Median	1.0473	1.0011	8.6988	2	2	Median	0.92296	0.9418	NaN	1	0	Median	330790000	166700000	164080000	88360000	43778000	44582000	61447000	31940000	29507000	124410000	61068000	63344000	56570000	29919000	26651000	49171	4207	46287	296841;296842;296843;296844;296845;296846;296847	398678;398679;398680;398681;398682;398683;398684;398685;398686;398687;398688	398681			11	
TANFVAVDTELSGLGDRK	1	Unmodified	1891.964	0.96395543	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	69.723	69.011	3	2.6138E-07	61089	160511_QHF_FH_JSI11i_3	113.47	95.11			0.99608	0.99181	12.33	5	0	Median	1.2429	1.0513	NaN	1	0	Median	0.78363	0.97442	NaN	1	0	Median	1.1012	1.0517	8.292	2	0	Median	0.73661	0.80435	NaN	1	0	Median	346620000	178870000	167750000	54197000	25258000	28939000	68419000	38143000	30276000	205470000	102700000	102780000	18528000	12773000	5754500	49172	4094	46288	296848;296849;296850;296851;296852	398689;398690;398691	398689			1	
TANGNVEAK	1	Unmodified	902.44576	0.44575938	606;2389	O94776;Q13330	MTA2;MTA1	Metastasis-associated protein MTA2;Metastasis-associated protein MTA1	no	no	0	0	0	0	By MS/MS	By matching		By MS/MS	3.5	4.31	3	1	1			1				2	1		3	5.2513	4.9603	2	4.8879E-06	2864	160511_QHF_FH_JSI12i_1	117.7	77.595			0.84229	0.88655	14.157	5	1	Median	0.94123	0.78079	18.414	2	1	Median	0.74689	0.88655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86048	0.89933	15.41	2	0	Median	4765000000	2501300000	2263700000	380760000	187390000	193370000	468450000	254830000	213620000	0	0	0	3915800000	2059100000	1856700000	49173	606;2389	46289	296853;296854;296855;296856;296857;296858	398692;398693;398694	398692			3	
TANGVWHPFVTVAPLGSPLK	1	Unmodified	2090.1313	0.13129553	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	90.002	89.237	3	1.5235E-05	77179	160511_QHF_FH_JSI12i_3	67.864	58.283			0.78281	0.89546	9.1285	3	0	Median	1.1423	0.95901	NaN	1	0	Median	0.78281	0.89546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77353	0.80038	NaN	1	0	Median	66019000	39851000	26167000	15308000	7389300	7918200	13376000	7730000	5645600	0	0	0	37335000	24732000	12603000	49174	15	46290	296859;296860;296861	398695;398696;398697	398697			3	
TANLAEANASEEDK	1	Unmodified	1461.6583	0.65833093	3285	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	19.973	19.47	2	5.5661E-10	16724	160511_QHF_FH_JSI10i_1	150.21	134.68			0.86313	0.80942	25.936	5	2	Median	0.86313	0.69014	NaN	1	0	Median	0.72149	0.80942	NaN	1	0	Median	0.91136	0.87475	NaN	1	0	Median	0.77878	0.81612	48.821	2	2	Median	189540000	94084000	95459000	41413000	16108000	25305000	33351000	15259000	18092000	40338000	21747000	18591000	74441000	40970000	33471000	49175	3285	46291	296862;296863;296864;296865;296866	398698;398699;398700;398701;398702;398703;398704;398705	398703			8	
TANPPKK	2	Unmodified	754.43374	0.43373813	1981	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	3	1	1.6343	1.5208	2	0.014159	23	160511_QHF_FH_JSI12i_3	67.035	62.353			0.94794	0.97668	35.784	6	0	Median	1.1332	0.98033	NaN	1	0	Median	0.79299	0.97304	NaN	1	0	Median	1.2423	1.1934	39.531	3	0	Median	0.51637	0.52605	NaN	1	0	Median	157520000	74533000	82985000	13942000	6857500	7084000	9022300	4963900	4058400	88150000	37235000	50915000	46404000	25476000	20928000	49176	1981	46292	296867;296868;296869;296870;296871;296872	398706;398707;398708;398709;398710;398711;398712;398713	398712			8	
TANQASDTFSGIGK	1	Unmodified	1395.663	0.66302238	2719	Q15847	ADIRF	Adipogenesis regulatory factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	37.009	33.618	2	2.2501E-06	29886	160511_QHF_FH_JSI11i_1	160.86	142.8			0.83166	0.88038	120.59	6	3	Median	0.50829	0.41554	NaN	1	1	Median	0.82773	0.96856	NaN	1	1	Median	3.1996	3.1068	185.99	2	0	Median	0.63502	0.67282	45.683	2	1	Median	413900000	228510000	185390000	104510000	69332000	35182000	122210000	69923000	52290000	55328000	7028700	48299000	131840000	82229000	49616000	49177	2719	46293	296873;296874;296875;296876;296877;296878	398714;398715;398716;398717;398718;398719;398720;398721	398714			8	
TANQLMNDFAEK	1	Unmodified	1380.6344	0.63436479	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	1	3	50.947	49.95	2	6.6272E-06	43036	160511_QHF_FH_JSI11i_2	121.68	102.9			1.2369	1.3824	30.575	6	3	Median	1.1768	1.0176	NaN	1	0	Median	1.1045	1.351	NaN	1	0	Median	1.5225	1.4942	NaN	1	0	Median	1.3	1.4146	43.908	3	3	Median	415480000	167810000	247670000	45315000	21178000	24137000	41903000	19998000	21905000	48677000	15001000	33676000	279590000	111630000	167950000	49178	3896	46294	296879;296880;296881;296882;296883;296884	398722;398723;398724;398725;398726;398727;398728;398729;398730;398731	398728			10	
TANVPQTVPMR	0	Unmodified	1212.6285	0.62849155	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								1	2	3	3	34.833	34.216	2	1.9394E-06	30531	160511_QHF_FH_JSI10i_1	121.5	100.04			1.1844	1.1014	11.764	8	8	Median	1.3152	1.0864	NaN	1	1	Median	0.90801	1.0584	4.0482	2	2	Median	1.2309	1.2012	10.694	2	2	Median	1.2365	1.2888	14.704	3	3	Median	1382300000	624070000	758240000	154100000	74901000	79204000	394130000	185820000	208310000	432480000	186950000	245530000	401610000	176410000	225200000	49179	1598	46295	296885;296886;296887;296888;296889;296890;296891;296892;296893	398732;398733;398734;398735;398736;398737;398738;398739;398740	398738			9	
TAPAANLASR	0	Unmodified	970.51959	0.51959303	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.95	4	3				1	3			2	3	3	3	21.882	18.576	2	0.00044464	15743	160511_QHF_FH_JSI9i_1	74.376	43.764			0.70037	0.97569	29.266	11	1	Linear	0.71023	0.60385	27.002	2	0	Median	0.74571	0.90427	32.693	3	1	Plateau	0.83942	0.84099	23.561	3	0	Plateau	0.78768	0.82395	18.416	3	0	Plateau	1052300000	597390000	454870000	250390000	144950000	105430000	295910000	170990000	124920000	336930000	176520000	160410000	169040000	104930000	64109000	49180	5474	46296	296894;296895;296896;296897;296898;296899;296900;296901;296902;296903;296904	398741;398742;398743;398744;398745;398746;398747;398748;398749;398750;398751;398752;398753;398754	398748			14	
TAPATMSTPTILVATAVHAYR	0	Unmodified	2171.1409	0.14087394	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.8	5.63			1						3	1	1	1	1	84.897	77.775	3	1.328E-18	40759	160513_QHF_FH_JSI9Kac_6	179.95	162.37			0.92291	0.93696	14.551	4	1	Median	0.87685	0.76414	NaN	1	1	Median	0.82627	0.92602	NaN	1	0	Median	0.9714	0.94803	NaN	1	0	Median	1.0065	1.0883	NaN	1	0	Median	216960000	109150000	107810000	76155000	41277000	34878000	22521000	13082000	9439700	93006000	42623000	50383000	25276000	12169000	13107000	49181	2938	46297	296905;296906;296907;296908	398755;398756;398757	398757			3	
TAPATMSTPTILVATAVHAYR	0	Oxidation (M)	2187.1358	0.13578856	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		78.644	69.33	3	1.4055E-07	37969	160513_QHF_FH_JSI11Kac_6	79.383	60.347			1.1064	1.0687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1064	1.0687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26978000	10424000	16554000	0	0	0	0	0	0	26978000	10424000	16554000	0	0	0	49182	2938	46297	296909;296910	398758;398759	398758		2170	2	
TAPDLLPHK	1	Unmodified	990.54983	0.54983053	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	35.157	34.734	3	0.019775	29577	160511_QHF_FH_JSI11i_2	36.334	27.12			1.7289	1.7024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7289	1.7024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12488000	4997000	7490700	0	0	0	0	0	0	12488000	4997000	7490700	0	0	0	49183	971	46298	296911;296912;296913	398760;398761;398762	398761			3	
TAPEKPVK	2	Acetyl (K)	910.51238	0.51238239	2188	Q02447	SP3	Transcription factor Sp3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	27.197	19.585	2	0.017879	11413	160513_QHF_FH_JSI10Kac_3	63.565	43.045			0.80993	0.85452	24.142	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69381	0.79956	NaN	1	0	Median	1.2285	1.2507	NaN	1	0	Median	0.80993	0.85452	NaN	1	0	Median	22708000	11581000	11126000	0	0	0	6708800	3928500	2780300	5846100	2483800	3362300	10153000	5168900	4983800	49184	2188	46299	296914;296915;296916	398763;398764;398765	398765	2300		3	
TAPEKPVK	2	Acetyl (K);Acetyl (Protein N-term)	952.52295	0.52294707	2188	Q02447	SP3	Transcription factor Sp3	yes	yes	1	1	0	1			By MS/MS	By MS/MS	11	0				2								1	1	37.175	28.46	2	0.011105	12110	160513_QHF_FH_JSI12Kacf_1	43.246	43.246			1.0499	1.0694	0.6317	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0981	1.0647	NaN	1	0	Median	1.0038	1.0742	NaN	1	0	Median	7796000	3679200	4116800	0	0	0	0	0	0	2942700	1357500	1585200	4853300	2321700	2531600	49185	2188	46299	296917;296918	398766;398767;398768	398766	2300		3	
TAPFDSR	0	Unmodified	792.37662	0.37661719	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	17.866	17.396	2	0.01211	14978	160511_QHF_FH_JSI12i_1	75.189	51.003			0.82113	0.85889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82113	0.85889	NaN	1	1	Median	155300000	82827000	72474000	0	0	0	0	0	0	0	0	0	155300000	82827000	72474000	49186	1061	46300	296919	398769	398769			1	
TAPFDSRFPNQNQTR	0	Unmodified	1777.8496	0.84959437	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			39.32	38.004	3	6.7628E-05	31033	160511_QHF_FH_JSI9i_3	93.424	87.714			1.1104	0.90283	21.984	3	0	Plateau	1.1104	0.89162	NaN	1	0	Median	1.0878	1.2807	9.612	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	518380000	259170000	259210000	227380000	104510000	122870000	291000000	154660000	136340000	0	0	0	0	0	0	49187	1061	46301	296920;296921;296922	398770;398771;398772	398771			3	
TAPGALTAKPPLAPK	2	Unmodified	1431.8449	0.84494991	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		45.456	43.878	3	0.00044916	36463	160511_QHF_FH_JSI10i_3	61.097	55.92			0.77042	0.75869	23.967	2	2	Median	0.77537	0.64042	NaN	1	1	Median	0.7655	0.89881	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92344000	48694000	43650000	35445000	16783000	18662000	56899000	31911000	24988000	0	0	0	0	0	0	49188	2836	46302	296923;296924;296925;296926	398773;398774;398775;398776	398775			4	
TAPLLLSYYLIK	1	Unmodified	1393.8221	0.82208921	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	98.814	95.967	2	2.6492E-12	49515	160513_QHF_FH_JSI10Kac_6	127.42	119.62			0.99614	0.99709	11.624	12	0	Median	1.2942	1.042	7.3138	3	0	Median	0.82819	0.95247	15.802	3	0	Plateau	1.0541	1.0075	4.0909	3	0	Plateau	0.9396	0.93335	9.625	3	0	Plateau	5126000000	2614200000	2511800000	1257500000	554330000	703170000	1195300000	673120000	522210000	1479300000	731820000	747440000	1193900000	654970000	538950000	49189	2303	46303	296927;296928;296929;296930;296931;296932;296933;296934;296935;296936;296937;296938	398777;398778;398779;398780;398781;398782;398783;398784;398785;398786;398787;398788;398789;398790;398791	398791			15	
TAPTVIT	0	Unmodified	701.39596	0.39595564	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	35.344	34.757	2	0.0099829	31452	160511_QHF_FH_JSI12i_1	66.994	56.809			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49190	1460	46304	296939	398792	398792			1	
TAPVQAPPAPVIVTETPEPAMTSGVYRPPGAR	0	Unmodified	3256.6914	0.69143274	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	1	2		2									3	1	81.351	81.133	3;4	2.949E-13	72546	160511_QHF_FH_JSI11i_3	76.162	70.259			1.0427	1.0138	4.3561	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0473	1.0165	3.5454	3	0	Median	0.93064	0.96947	NaN	1	0	Median	309060000	132150000	176910000	0	0	0	0	0	0	267880000	109890000	157980000	41187000	22263000	18924000	49191	5383	46305	296940;296941;296942;296943	398793;398794;398795;398796;398797;398798;398799;398800;398801;398802;398803	398798			11	
TAPYVVTGSVDQTVK	1	Unmodified	1563.8144	0.81443765	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	8					4				2	4	3	3	54.682	51.09	2;3	8.8592E-06	46151	160511_QHF_FH_JSI12i_1	156.36	128.88			0.98007	0.99163	18.536	12	2	Median	1.1472	0.9302	2.8884	2	0	Median	0.92198	1.0819	27.442	4	2	Median	0.99291	0.94717	11.708	3	0	Median	0.93958	1.0097	3.6481	3	0	Median	2471400000	1251700000	1219600000	617800000	272130000	345670000	638880000	355270000	283610000	545620000	290190000	255430000	669070000	334160000	334910000	49192	1553	46306	296944;296945;296946;296947;296948;296949;296950;296951;296952;296953;296954;296955	398804;398805;398806;398807;398808;398809;398810;398811;398812;398813;398814;398815;398816;398817;398818;398819;398820;398821;398822;398823;398824	398810			21	
TAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLK	1	Unmodified	4181.9811	0.981145	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		85.468	84.899	4;5	7.6371E-19	75397	160511_QHF_FH_JSI10i_2	79.29	77.918			0.95819	0.97576	9.4518	5	2	Median	1.0803	0.93672	14.34	2	1	Median	0.85603	1.0198	6.2465	2	0	Median	0.96176	0.9103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	265820000	126200000	139620000	99965000	51749000	48217000	142110000	70061000	72054000	23743000	4395400	19348000	0	0	0	49193	2505	46307	296956;296957;296958;296959;296960	398825;398826;398827;398828;398829;398830;398831;398832;398833;398834;398835	398833			11	
TAQALSSGSGSQETK	1	Unmodified	1450.69	0.68996541	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				2	1	3	1	10.87	9.4722	2	6.3296E-30	7810	160511_QHF_FH_JSI12i_1	191.48	182.9			1.0749	1.0011	13.763	7	5	Median	1.3143	1.0819	14.467	2	2	Median	0.73868	0.88609	NaN	1	1	Median	1.0749	1.023	18.153	3	2	Median	0.96785	1.0011	NaN	1	0	Median	768330000	402230000	366100000	271760000	131670000	140090000	125350000	73989000	51361000	236060000	122750000	113310000	135160000	73825000	61334000	49194	721	46308	296961;296962;296963;296964;296965;296966;296967	398836;398837;398838;398839;398840;398841;398842	398838			7	
TAQEVETYRR	0	Unmodified	1251.6208	0.62076364	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	4.68		5	5					2		2	4	4	2	11.559	9.7068	2;3	9.1982E-05	7990	160511_QHF_FH_JSI10i_3	85.355	47.658			0.89872	1.0114	23.133	12	3	Median	1.5657	1.3313	1.2024	2	1	Median	0.89054	1.0578	7.6917	4	1	Median	0.95259	0.9142	26.989	4	1	Median	0.7586	0.80547	30.883	2	0	Median	1576700000	799280000	777410000	500040000	216250000	283790000	756100000	414460000	341630000	253450000	132410000	121040000	67108000	36158000	30950000	49195	1128	46309	296968;296969;296970;296971;296972;296973;296974;296975;296976;296977;296978;296979	398843;398844;398845;398846;398847;398848;398849;398850;398851;398852;398853	398846			11	
TAQGGLVANR	0	Acetyl (Protein N-term)	1027.5411	0.54105675	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	1	0	0	By MS/MS			By MS/MS	1	0	2									1			1	27.056	25.798	2	8.1255E-10	22270	160511_QHF_FH_JSI9i_1	98.299	71.697			0.06797	0.055362	NaN	1	0	Median	0.06797	0.055362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69534000	63837000	5696800	69534000	63837000	5696800	0	0	0	0	0	0	0	0	0	49196	2892	46310	296980;296981	398854;398855	398855			2	
TAQGSLSLK	1	Unmodified	903.50255	0.50254598	283	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.32	5	4				1	2			2	4	2	4	22.75	20.194	2	6.2592E-05	17502	160511_QHF_FH_JSI10i_1	115.7	48.705			1.006	1.0614	15.227	12	2	Median	1.1816	0.99609	14.2	2	0	Median	0.91621	1.0879	14.277	4	2	Median	1.0103	1.0002	27.443	2	0	Median	0.93287	1.0169	15.189	4	0	Median	2700200000	1345200000	1355100000	501580000	217400000	284170000	968710000	514490000	454220000	617740000	269440000	348300000	612220000	343830000	268390000	49197	283	46311	296982;296983;296984;296985;296986;296987;296988;296989;296990;296991;296992;296993	398856;398857;398858;398859;398860;398861;398862;398863;398864;398865;398866;398867;398868	398863			13	
TAQLTSLAMLMLDSFYR	0	Unmodified	1959.9798	0.97980519	2426	Q13496	MTM1	Myotubularin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.494	93.773	3	0.053985	55089	160513_QHF_FH_JSI10Kac_6	35.624	28.393			0.93555	1.1035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93555	1.1035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35061000	19804000	15256000	0	0	0	35061000	19804000	15256000	0	0	0	0	0	0	49198	2426	46312	296994	398869	398869			0	
TAQNFLSIFLK	1	Unmodified	1280.7129	0.71287311	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			96.736	93.784	2	0.00027468	82283	160511_QHF_FH_JSI9i_3	90.306	74.425			1.3674	1.3184	54.426	2	2	Median	1.1035	0.89724	NaN	1	1	Median	1.6945	1.9372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191160000	76062000	115100000	77426000	40731000	36695000	113740000	35331000	78406000	0	0	0	0	0	0	49199	3063	46313	296995;296996	398870;398871	398870			2	
TAQNHPMLVELK	1	Unmodified	1379.7231	0.72312022	5643	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	4	2	38.354	37.959	2;3	3.5052E-05	33117	160511_QHF_FH_JSI11i_3	122.7	96.891			0.8731	0.95492	20.065	8	2	Median	NaN	NaN	NaN	0	0	Median	0.89703	1.1068	20.92	2	0	Median	0.91852	0.88993	16.665	4	1	Median	0.80154	0.81469	22.502	2	1	Median	1417500000	763300000	654220000	0	0	0	345350000	205740000	139610000	716660000	366050000	350610000	355510000	191510000	164000000	49200	5643	46314	296997;296998;296999;297000;297001;297002;297003;297004	398872;398873;398874;398875;398876;398877;398878;398879	398872			8	
TAQNLSIFLGSFR	0	Unmodified	1452.7725	0.77251325	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.7	6.13			2						4	2	4			87.077	82.445	2;3	1.7608E-13	44126	160513_QHF_FH_JSI10Kac_6	200.93	167.05			0.88449	0.99232	5.3353	6	3	Median	1.1744	0.96528	1.9563	2	0	Median	0.8613	1.0117	6.3095	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1149200000	609850000	539320000	196300000	94762000	101540000	952870000	515080000	437790000	0	0	0	0	0	0	49201	432	46315	297005;297006;297007;297008;297009;297010	398880;398881;398882;398883;398884;398885;398886	398884			7	
TAQPHPK	1	Unmodified	777.41334	0.41333704	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	1.0626	0.70305	2	0.023698	492	160511_QHF_FH_JSI9i_2	55.441	45.691			1.0903	0.9458	45.029	5	2	Median	1.0903	0.9458	NaN	1	0	Median	1.0482	1.3034	80.115	2	1	Median	1.3271	1.2529	NaN	1	1	Median	0.7596	0.84054	NaN	1	0	Median	102880000	45824000	57061000	33969000	11134000	22836000	40928000	21110000	19818000	16058000	6931400	9126600	11930000	6649000	5280700	49202	3175	46316	297011;297012;297013;297014;297015	398887;398888;398889;398890;398891	398888			5	
TAQQIAK	1	Unmodified	758.42865	0.42865276	2140;1782	P98175;P52756	RBM10;RBM5	RNA-binding protein 10;RNA-binding protein 5	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.71	5.28	4		1			2				1	2	2	2	6.3642	4.0985	2	0.032973	3651	160511_QHF_FH_JSI11i_1	50.855	18.9			0.92181	0.97158	12.931	7	0	Median	1.1274	0.91525	NaN	1	0	Median	0.7756	0.90857	19.124	2	0	Median	1.163	1.1321	1.6411	2	0	Median	0.89925	0.93978	4.7065	2	0	Median	987650000	500130000	487510000	226950000	97565000	129380000	235170000	143650000	91525000	263960000	126150000	137820000	261570000	132780000	128790000	49203	2140;1782	46317	297016;297017;297018;297019;297020;297021;297022	398892;398893;398894	398892			3	
TAQQIAKDMER	1	Acetyl (K)	1331.6503	0.65034921	2140;1782	P98175;P52756	RBM10;RBM5	RNA-binding protein 10;RNA-binding protein 5	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	38.293	29.067	2	7.603E-11	16762	160513_QHF_FH_JSI12Kac_3	135.99	113.35			0.91082	0.90845	10.458	6	0	Median	NaN	NaN	NaN	0	0	Median	0.82162	0.97043	13.265	2	0	Median	0.92885	0.90845	1.5171	2	0	Median	0.86378	0.92546	17.951	2	0	Median	42191000	22287000	19904000	0	0	0	14826000	8127600	6698200	12590000	6720700	5868800	14775000	7438400	7337000	49204	2140;1782	46318	297023;297024;297025;297026;297027;297028	398895;398896;398897;398898;398899;398900	398898	1796		6	
TAQQIAKDMER	1	Acetyl (K);Oxidation (M)	1347.6453	0.64526383	2140;1782	P98175;P52756	RBM10;RBM5	RNA-binding protein 10;RNA-binding protein 5	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	22.317	14.928	2	0.00072963	9454	160513_QHF_FH_JSI12Kac_3	81.625	68.272			0.91612	0.9942	3.0198	4	0	Median	NaN	NaN	NaN	0	0	Median	0.80444	0.94693	NaN	1	0	Median	1.0303	1.0046	NaN	1	0	Median	0.91612	0.99852	2.0879	2	0	Median	18193000	9013800	9179500	0	0	0	4205100	2853800	1351200	4117600	1651700	2465900	9870600	4508300	5362400	49205	2140;1782	46318	297029;297030;297031;297032	398901;398902;398903;398904;398905	398903	1796	1466	5	
TAQQNGDTPEAQGLDITTYGESNLVAEPQK	1	Unmodified	3174.4953	0.49529494	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	73.54	73.16	3	5.8366E-17	66256	160511_QHF_FH_JSI10i_1	94.006	82.799			0.96589	1.0778	9.2516	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98689	1.1507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94533	1.0095	NaN	1	0	Median	74467000	46509000	27958000	0	0	0	51439000	31459000	19979000	0	0	0	23028000	15050000	7978500	49206	2594	46319	297033;297034	398906;398907;398908;398909;398910	398909			5	
TAQSGALRDVSEELSR	0	Unmodified	1717.8595	0.85949036	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			47.443	46.48	3	0.017813	40947	160511_QHF_FH_JSI10i_2	38.057	24.192			1.1333	1.3706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1333	1.3706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120680000	56780000	63904000	0	0	0	120680000	56780000	63904000	0	0	0	0	0	0	49207	1493	46320	297035	398911;398912	398912			2	
TAQSTPSAPPQK	1	Unmodified	1211.6146	0.61461563	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.739	10.504	2	0.0049091	8095	160511_QHF_FH_JSI10i_1	63.046	41.771			0.624	0.70866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.624	0.70866	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29868000	20995000	8873100	0	0	0	29868000	20995000	8873100	0	0	0	0	0	0	49208	971	46321	297036	398913	398913			1	
TAQVGGSFSGQDSDK	1	Unmodified	1482.6587	0.65866529	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	20.007	19.52	2	0.00041923	17061	160511_QHF_FH_JSI12i_1	72.891	66.038			0.58526	0.6057	51.085	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58526	0.6057	51.085	2	1	Median	141200000	76320000	64884000	0	0	0	0	0	0	0	0	0	141200000	76320000	64884000	49209	2546	46322	297037;297038	398914;398915	398914			2	
TASAEEIK	1	Unmodified	847.42871	0.42871234	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		1	0	3									1	1	1		9.9584	9.5747	2	0.003527	7098	160511_QHF_FH_JSI9i_1	71.877	44.74			0.72089	0.8552	13.044	3	0	Plateau	0.8712	0.72447	NaN	1	0	Median	0.72089	0.8552	NaN	1	0	Median	0.95077	0.93707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	353900000	186860000	167040000	115760000	56168000	59588000	123800000	69257000	54541000	114340000	61432000	52913000	0	0	0	49210	5495	46323	297039;297040;297041	398916;398917	398917			2	
TASALFAGFR	0	Unmodified	1039.5451	0.5450795	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				63.14	61.632	2	0.009284	50618	160511_QHF_FH_JSI9i_3	50.04	27.3			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49211	3676	46324	297042	398918	398918			1	
TASDCGAVK	1	Unmodified	907.40693	0.40693104	873	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.7259	5.3798	2	0.012198	3394	160511_QHF_FH_JSI12i_1	57.59	33.387			1.2717	1.3335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2717	1.3335	NaN	1	1	Median	42243000	18175000	24068000	0	0	0	0	0	0	0	0	0	42243000	18175000	24068000	49212	873	46325	297043	398919	398919			1	
TASDMVSTSR	0	Unmodified	1053.4761	0.47607323	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				1	2		15.297	11.367	2	0.00065821	10146	160511_QHF_FH_JSI10i_1	70.552	63.072			0.9571	1.0366	8.1449	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93926	1.0981	NaN	1	0	Median	0.97528	0.97861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	365740000	198120000	167620000	0	0	0	362230000	196210000	166020000	3509800	1916200	1593700	0	0	0	49213	110	46326	297044;297045;297046	398920;398921;398922;398923	398922			4	
TASDMVSTSR	0	Oxidation (M)	1069.471	0.47098786	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	1	0		By MS/MS		By MS/MS	7	6	1					1					1		1	7.2824	3.611	2	0.02127	2957	160513_QHF_FH_JSI12Kac_3	45.161	41.905			0.97193	1.1028	5.917	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89901	1.0576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0508	1.1499	NaN	1	0	Median	31381000	14485000	16896000	0	0	0	28613000	13100000	15513000	0	0	0	2767800	1384800	1383000	49214	110	46326	297047;297048	398924;398925	398925			2	
TASEDSCKR	1	Unmodified	1052.4557	0.45567214	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.198	17.705	2	0.046726	15111	160511_QHF_FH_JSI12i_1	36.701	27.956			1.1924	1.1327	18.981	4	0	Median	1.2604	1.0198	NaN	1	0	Median	1.128	1.3414	NaN	1	0	Median	1.3003	1.2581	NaN	1	0	Median	0.83067	0.8888	NaN	1	0	Median	1689700000	757080000	932620000	401350000	166790000	234560000	438070000	220370000	217700000	484150000	177950000	306200000	366140000	191970000	174170000	49215	1085	46327	297049;297050;297051;297052	398926	398926			1	
TASEMVLADDNFSTIVAAVEEGR	0	Unmodified	2424.1479	0.14786939	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0			By MS/MS		2	0		1										1		101.8	101.67	3	3.5845E-05	89451	160511_QHF_FH_JSI11i_2	29.492	18.435			1.6565	1.6349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6565	1.6349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145710000	51312000	94402000	0	0	0	0	0	0	145710000	51312000	94402000	0	0	0	49216	1103	46328	297053	398927	398927			1	
TASEPSAQLSYASTGR	0	Unmodified	1624.7693	0.76927837	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.293	33.689	2	2.4957E-05	30477	160511_QHF_FH_JSI12i_1	108.59	102.27			1.0699	1.0435	7.1632	4	1	Median	1.2621	1.0663	NaN	1	1	Median	0.79545	0.94716	NaN	1	0	Median	1.1474	1.1218	NaN	1	0	Median	0.99768	1.0213	NaN	1	0	Median	148060000	75005000	73051000	27549000	14511000	13038000	43707000	26425000	17282000	43741000	21007000	22734000	33058000	13062000	19997000	49217	3962	46329	297054;297055;297056;297057	398928;398929;398930;398931	398929			4	
TASESISNLSEAGSIK	1	Unmodified	1592.7893	0.78934511	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	47.785	47.104	2	7.0459E-52	42360	160511_QHF_FH_JSI10i_1	217.46	203.52			1.1615	1.0792	9.8162	4	0	Median	1.2677	1.0357	NaN	1	0	Median	0.88973	1.0489	NaN	1	0	Median	1.2985	1.2831	NaN	1	0	Median	1.0642	1.1105	NaN	1	0	Median	431240000	203380000	227860000	101370000	50695000	50674000	113340000	53085000	60255000	112990000	52438000	60553000	103540000	47162000	56378000	49218	1360	46330	297058;297059;297060;297061	398932;398933;398934;398935;398936;398937;398938;398939	398937			8	
TASFAVR	0	Unmodified	750.40244	0.40243801	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	17.684	17.692	2	0.0039472	12503	160511_QHF_FH_JSI11i_3	101.21	6.8102			1.0048	0.91816	6.6822	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0363	0.97208	8.071	2	0	Median	0.88232	0.91529	NaN	1	0	Median	462880000	243900000	218980000	0	0	0	0	0	0	327760000	183980000	143780000	135120000	59916000	75202000	49219	5645	46331	297062;297063;297064	398940;398941;398942;398943	398940			4	
TASFSESR	0	Unmodified	883.40356	0.40356022	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.38	5.91	1	4					3			1	2	2	3	11.403	8.8972	2	0.00081306	5862	160513_QHF_FH_JSI11Kac_4	105.14	73.2			0.83268	0.90461	110.34	7	2	Median	1.1257	0.98019	NaN	1	0	Median	0.73686	0.91075	NaN	1	0	Median	0.88086	0.88973	8.3485	2	1	Median	0.66966	0.75333	164.25	3	1	Median	1310800000	751940000	558810000	278420000	144150000	134270000	182610000	108240000	74367000	455280000	225600000	229670000	394450000	273950000	120500000	49220	1798	46332	297065;297066;297067;297068;297069;297070;297071;297072	398944;398945;398946;398947;398948;398949;398950;398951;398952;398953;398954	398947			11	
TASFSESRADEVAPAK	1	Unmodified	1664.8006	0.8005785	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.64	2	7	3							2	3	4	3	27.421	26.879	2;3	7.7084E-06	23322	160511_QHF_FH_JSI10i_2	115.8	115.8			1.0463	1.101	14.345	12	0	Median	1.5955	1.3853	0.83127	2	0	Median	0.92939	1.1409	19.661	3	0	Median	1.0964	1.1028	10.312	4	0	Median	0.96047	1.0062	3.6794	3	0	Median	1696500000	871890000	824590000	300480000	112070000	188410000	541590000	271440000	270150000	317590000	157430000	160160000	536810000	330950000	205870000	49221	1798	46333	297073;297074;297075;297076;297077;297078;297079;297080;297081;297082;297083;297084	398955;398956;398957;398958;398959;398960;398961;398962;398963;398964;398965;398966;398967;398968;398969;398970	398968			16	
TASFSESRADEVAPAKK	2	Unmodified	1792.8955	0.89554151	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		22.608	21.73	4	5.5822E-05	17884	160511_QHF_FH_JSI10i_3	73.464	68.255			1.0567	1.0257	37.275	4	1	Median	1.2318	1.0257	9.1456	2	0	Median	0.99044	1.1253	NaN	1	0	Median	0.55557	0.50838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	463860000	207320000	256530000	205780000	79057000	126720000	165080000	77686000	87390000	93003000	50581000	42422000	0	0	0	49222	1798	46334	297085;297086;297087;297088	398971;398972;398973;398974;398975	398972			5	
TASFVAR	0	Unmodified	750.40244	0.40243801	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	15.651	15.189	2	0.0099712	12778	160511_QHF_FH_JSI10i_2	76.847	2.4081			0.89491	0.97027	12.592	6	1	Median	1.1814	1.0013	NaN	1	0	Median	0.805	0.96897	10.313	2	0	Median	0.92519	0.94018	NaN	1	0	Median	0.85075	0.90674	24.631	2	1	Median	1280700000	690870000	589870000	213570000	102560000	111010000	300230000	169690000	130550000	272940000	154700000	118240000	493990000	263920000	230070000	49223	2676	46335	297089;297090;297091;297092;297093;297094	398976;398977;398978;398979	398979			4	
TASGSSVTSLDGTR	0	Unmodified	1337.6423	0.64228694	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.444	21.911	2	1.1437E-30	18766	160511_QHF_FH_JSI9i_1	196.24	158.54			0.96393	0.91363	10.062	4	0	Median	1.0286	0.86109	NaN	1	0	Median	0.66707	0.79005	NaN	1	0	Median	0.99508	0.97283	NaN	1	0	Median	0.93375	0.96937	NaN	1	0	Median	1617000000	833100000	783910000	345900000	147800000	198110000	408210000	241400000	166810000	348710000	184610000	164100000	514180000	259300000	254880000	49224	3851	46336	297095;297096;297097;297098	398980;398981;398982;398983;398984;398985;398986;398987	398987			8	
TASLFEQK	1	Unmodified	922.476	0.47599688	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.168	28.259	2	0.00055359	24442	160511_QHF_FH_JSI9i_2	104.44	64.774			0.6524	0.68581	34.279	4	2	Median	0.85982	0.73603	NaN	1	0	Median	0.51982	0.63901	NaN	1	1	Median	0.40571	0.41627	NaN	1	1	Median	0.81879	0.94301	NaN	1	0	Median	304520000	182510000	122020000	85701000	52579000	33122000	61917000	43133000	18784000	90461000	51627000	38835000	66444000	35168000	31276000	49225	5161	46337	297099;297100;297101;297102	398988;398989;398990;398991	398989			4	
TASLFEQKSMK	2	Acetyl (K);Oxidation (M)	1326.649	0.64895222	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	1	0	1	1			By MS/MS		14	0							1					1		49.493	38.902	2	0.024115	22919	160513_QHF_FH_JSI11Kac_4	53.751	42.587			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1312800	1312800	0	0	0	0	0	0	0	1312800	1312800	0	0	0	0	49226	5161	46338	297103	398992	398992	3328		1	
TASMLWLLQQEMVTWR	0	Unmodified	1991.9961	0.99612396	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		97.652	89.839	2;3	7.12E-55	53447	160513_QHF_FH_JSI10Kac_6	281.48	244.15			0.96886	1.0543	31.109	5	3	Median	1.2366	1.0507	34.425	2	1	Median	0.67145	0.79407	40.092	2	1	Median	1.127	1.1065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	366240000	205510000	160730000	99241000	45905000	53336000	246410000	149270000	97147000	20589000	10343000	10246000	0	0	0	49227	1895	46339	297104;297105;297106;297107;297108	398993;398994;398995;398996;398997	398997			5	
TASNIGGFNAAIK	1	Unmodified	1262.6619	0.66190017	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	2	2								2		1	1	46.934	46.135	2	0.00037858	41886	160511_QHF_FH_JSI12i_1	95.642	70.598			0.74688	0.75005	46.574	3	3	Plateau	1.0762	0.90766	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74688	0.75005	NaN	1	1	Median	1.7439	1.8173	NaN	1	1	Median	179960000	81950000	98013000	36600000	14725000	21875000	0	0	0	104760000	55350000	49414000	38599000	11875000	26724000	49228	4678	46340	297109;297110;297111;297112	398998;398999;399000;399001	398998			4	
TASNIIDVSAADSQGMEQHEYMDR	0	Unmodified	2667.1541	0.15409375	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	61.067	60.289	3	3.4837E-29	54988	160511_QHF_FH_JSI12i_1	167.72	167.63			1.0294	1.1083	6.67	8	0	Median	1.421	1.2062	3.4424	2	0	Median	0.88696	1.0702	3.8106	2	0	Median	1.0294	1.0354	4.4696	2	0	Median	1.0437	1.124	0.86778	2	0	Median	505460000	254060000	251400000	103670000	42235000	61436000	141220000	78138000	63078000	136120000	69894000	66226000	124450000	63792000	60659000	49229	3051	46341	297113;297114;297115;297116;297117;297118;297119;297120	399002;399003;399004;399005;399006;399007;399008;399009;399010;399011	399005			10	
TASNVEEAFINTAK	1	Unmodified	1493.7362	0.73618733	1930	P61019	RAB2A	Ras-related protein Rab-2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.61	9	4	3			2	5			4	7	6	6	59.53	55.814	2;3	2.5039E-98	50202	160511_QHF_FH_JSI10i_1	262.11	234.86			1.2123	1.1926	29.936	19	3	Median	1.304	1.1116	37.92	4	1	Median	0.99904	1.1926	17.522	5	1	Median	1.186	1.1635	26.593	5	0	Median	1.2123	1.2798	40.155	5	1	Median	3822300000	1777600000	2044700000	961080000	398820000	562270000	724610000	423980000	300630000	1321000000	602090000	718920000	815580000	352730000	462860000	49230	1930	46342	297121;297122;297123;297124;297125;297126;297127;297128;297129;297130;297131;297132;297133;297134;297135;297136;297137;297138;297139;297140;297141;297142;297143	399012;399013;399014;399015;399016;399017;399018;399019;399020;399021;399022;399023;399024;399025;399026;399027;399028;399029;399030;399031;399032;399033;399034;399035;399036;399037;399038;399039;399040;399041;399042;399043;399044;399045;399046;399047;399048;399049;399050;399051;399052;399053;399054	399031			43	
TASPIILHENNVSR	0	Unmodified	1549.8213	0.82125436	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		34.787	34.787	3	0.018402	30367	160511_QHF_FH_JSI11i_3	38.995	29.196			1.1371	1.0388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1371	1.0388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92361000	48193000	44168000	0	0	0	0	0	0	92361000	48193000	44168000	0	0	0	49231	2694	46343	297144	399055	399055			1	
TASPLEHILQTLFGK	1	Unmodified	1653.909	0.90900673	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		2	1	2	101.05	99.142	2;3	1.1944E-30	89479	160511_QHF_FH_JSI12i_3	170.11	159.26			1.0467	1.0471	5.2822	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79631	0.95308	NaN	1	1	Median	1.0848	1.0415	NaN	1	0	Median	1.0467	1.0471	NaN	1	0	Median	242640000	139410000	103230000	0	0	0	65763000	48014000	17749000	54733000	26124000	28609000	122140000	65269000	56871000	49232	4413	46344	297145;297146;297147;297148;297149	399056;399057;399058;399059;399060;399061;399062	399060			7	
TASRPDDIPDSPSSPK	1	Unmodified	1668.7955	0.79549312	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			24.972	24.069	3	0.029201	20908	160511_QHF_FH_JSI10i_2	37.083	20.417			0.37287	0.45133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37287	0.45133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20493000	14779000	5713800	0	0	0	20493000	14779000	5713800	0	0	0	0	0	0	49233	3003	46345	297150	399063	399063			1	
TASSSDSEEDPEALEK	1	Unmodified	1693.7166	0.71663367	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	25.345	24.929	2	1.1771E-07	22144	160511_QHF_FH_JSI12i_1	168.61	162.17			0.47687	0.48038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47687	0.48038	NaN	1	1	Median	45276000	38462000	6814000	0	0	0	20438000	20438000	0	0	0	0	24838000	18024000	6814000	49234	3580	46346	297151;297152	399064;399065	399064			2	
TASSVIELTCTK	1	Unmodified	1308.6595	0.65951691	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			44.779	44.356	2	5.7832E-05	39903	160511_QHF_FH_JSI10i_1	108.31	68.376			1.1643	1.3362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1643	1.3362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29511000	12310000	17202000	0	0	0	29511000	12310000	17202000	0	0	0	0	0	0	49235	1005	46347	297153	399066	399066			1	
TASTNNIAQAR	0	Unmodified	1145.5789	0.57889882	5238	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.8	4	4	1		1	3	3			2	5	4	5	13.242	9.6364	2	2.6542E-48	8780	160511_QHF_FH_JSI12i_1	223.08	189.82			0.95553	0.95854	22.838	16	3	Median	0.95553	0.80046	7.2306	2	0	Median	0.74761	0.85577	9.574	5	0	Median	1.1623	1.1378	7.8803	4	1	Median	1.0551	1.1391	35.178	5	2	Median	3700600000	1795200000	1905400000	797170000	406770000	390410000	1213200000	637340000	575870000	807070000	369230000	437840000	883150000	381890000	501260000	49236	5238	46348	297154;297155;297156;297157;297158;297159;297160;297161;297162;297163;297164;297165;297166;297167;297168;297169	399067;399068;399069;399070;399071;399072;399073;399074;399075;399076;399077;399078;399079;399080;399081;399082;399083;399084;399085;399086	399070			20	
TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR	0	Unmodified	3455.7281	0.72808884	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	68.312	67.698	4	2.9871E-27	61630	160511_QHF_FH_JSI12i_1	111.79	106.36			1.2777	1.3038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2777	1.3038	NaN	1	0	Median	88079000	31812000	56267000	0	0	0	0	0	0	0	0	0	88079000	31812000	56267000	49237	2217	46349	297170	399087	399087			1	
TASVFGTHQAFAPYNKPSLSGAR	1	Acetyl (K)	2448.2186	0.21860699	3332	Q86UW9	DTX2	Probable E3 ubiquitin-protein ligase DTX2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									3		2		1	73.855	66.483	3	1.3849E-08	34480	160513_QHF_FH_JSI12Kac_6	86.551	74.355			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17118000	17118000	0	0	0	0	17118000	17118000	0	0	0	0	0	0	0	49238	3332	46350	297171;297172;297173	399088;399089;399090	399088	2845		3	
TASVFLLEK	1	Unmodified	1006.5699	0.56989727	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.4		3						4	1	2	2	2	2	67.355	60.611	2	0.0044659	30440	160513_QHF_FH_JSI10Kac_5	69.423	52.038			1.117	1.0888	10.046	8	1	Median	1.2911	1.084	9.621	2	0	Median	0.7924	0.95915	6.272	2	0	Median	1.2552	1.2132	1.1	2	1	Median	0.97735	1.0888	4.4683	2	0	Median	375040000	185550000	189480000	12734000	6142600	6591300	99707000	54934000	44773000	156530000	68601000	87933000	106060000	55875000	50185000	49239	4132	46351	297174;297175;297176;297177;297178;297179;297180;297181	399091;399092;399093;399094	399094			4	
TASVLSKDDVAPESGDTTVK	2	Unmodified	2019.0008	0.0007944461	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	39.388	38.956	3	8.1466E-05	34917	160511_QHF_FH_JSI10i_1	70.072	60.315			11.171	11.999	21.921	3	3	Median	NaN	NaN	NaN	0	0	Median	7.1607	8.512	NaN	1	1	Median	13.396	12.797	NaN	1	1	Median	11.171	11.999	NaN	1	1	Median	891080000	73473000	817610000	0	0	0	179510000	24270000	155240000	312040000	23080000	288960000	399540000	26123000	373410000	49240	596	46352	297182;297183;297184	399095;399096;399097	399097			3	
TASVLSKDDVAPESGDTTVK	2	Acetyl (K)	2061.0114	0.011359132	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	63.85	54.412	3	0.04653	24150	160513_QHF_FH_JSI12Kac_2	36.111	27.403			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1103600	1103600	0	0	0	0	0	0	0	0	0	0	1103600	1103600	0	49241	596	46352	297185	399098	399098			1	
TASVPLDAVR	0	Unmodified	1027.5662	0.56620887	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	40.305	39.503	2	0.0016411	34984	160511_QHF_FH_JSI9i_1	64.654	44.877			0.92445	0.91459	21.32	2	1	Median	0.96321	0.7866	NaN	1	0	Median	0.88724	1.0634	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183860000	89152000	94709000	58629000	25163000	33466000	125230000	63989000	61243000	0	0	0	0	0	0	49242	4033	46353	297186;297187;297188	399099;399100;399101;399102	399102			4	
TASWLAAELSK	1	Unmodified	1175.6186	0.61863837	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	1	3	2	66.779	66.008	2	7.3975E-13	56997	160511_QHF_FH_JSI12i_2	142.83	126.29			0.69013	0.75479	39.513	7	2	Median	0.71479	0.59157	49.037	2	1	Median	0.85705	1.064	NaN	1	0	Median	1.0215	1.0072	50.128	2	1	Median	0.65032	0.67616	15.557	2	0	Median	1292900000	700010000	592920000	172050000	92174000	79878000	287710000	135170000	152530000	427530000	246290000	181230000	405650000	226370000	179280000	49243	5017;5423	46354	297189;297190;297191;297192;297193;297194;297195;297196	399103;399104;399105;399106;399107;399108;399109;399110;399111;399112;399113;399114	399105			12	
TATADDKK	2	Acetyl (K)	890.43453	0.434526	1172;4146	Q96K17;P20290	BTF3L4;BTF3	Transcription factor BTF3 homolog 4;Transcription factor BTF3	no	no	1	0	0	1		By MS/MS	By MS/MS		12.5	0.5					2	2					2	2		6.0441	-1.2447	2	0.012479	1861	160513_QHF_FH_JSI11Kac_2	99.139	64.314			0.5189	0.55403	83.748	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94638	1.1262	30.461	2	0	Median	0.29055	0.27975	26.769	2	0	Median	NaN	NaN	NaN	0	0	Median	40625000	27073000	13552000	0	0	0	16008000	8651200	7357200	24617000	18422000	6194400	0	0	0	49244	4146;1172	46355	297197;297198;297199;297200	399115;399116;399117	399115	1031		3	
TATALLESPLSATVEDALQSFLK	1	Unmodified	2404.2737	0.27372183	4262	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	3	3	3	103.91	103.85	2;3	1.203E-33	92347	160511_QHF_FH_JSI10i_2	207.72	187.26			0.95029	1.0401	15.263	11	8	Median	1.2451	1.0753	4.9329	2	2	Median	1.1173	1.3608	13.935	3	2	Plateau	1.1619	1.12	20.318	3	2	Median	0.83499	0.91257	6.6075	3	2	Median	211310000	101040000	110270000	49855000	22466000	27389000	43147000	21678000	21469000	86351000	41454000	44897000	31954000	15444000	16510000	49245	4262	46356	297201;297202;297203;297204;297205;297206;297207;297208;297209;297210;297211	399118;399119;399120;399121;399122;399123;399124;399125;399126;399127;399128;399129;399130	399128			13	
TATANGFQMVTSGVQSK	1	Unmodified	1725.8356	0.83558379	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		53.404	52.996	2	3.8322E-15	48069	160511_QHF_FH_JSI11i_1	148.57	123.23			0.59197	0.63189	14.911	2	1	Median	NaN	NaN	NaN	0	0	Median	0.60276	0.70215	NaN	1	1	Median	0.58137	0.56866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96346000	62142000	34204000	0	0	0	51020000	34354000	16666000	45326000	27788000	17538000	0	0	0	49246	3951	46357	297212;297213	399131;399132	399131			1	
TATAVAHCK	1	Unmodified	957.4702	0.4702	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.54	1	9	7				1	8	7	8	8	9	8	5.4445	1.0738	2;3	1.853E-08	2932	160511_QHF_FH_JSI10i_2	151.27	138.28			1.0161	1.105	36.073	29	3	Median	1.438	1.2215	22.191	5	1	Median	0.96863	1.1586	57.809	8	1	Median	0.97261	0.93647	23.785	8	1	Median	1.0619	1.1321	10.759	8	0	Median	11760000000	5977500000	5782300000	1050900000	424030000	626840000	2061600000	1131800000	929840000	4730700000	2640600000	2090100000	3916600000	1781100000	2135500000	49247	1987	46358	297214;297215;297216;297217;297218;297219;297220;297221;297222;297223;297224;297225;297226;297227;297228;297229;297230;297231;297232;297233;297234;297235;297236;297237;297238;297239;297240;297241;297242;297243;297244;297245;297246	399133;399134;399135;399136;399137;399138;399139;399140;399141;399142;399143;399144;399145;399146;399147;399148;399149;399150;399151;399152;399153;399154;399155;399156;399157;399158;399159;399160;399161;399162;399163;399164;399165;399166;399167;399168;399169;399170;399171;399172;399173;399174;399175;399176;399177;399178;399179;399180;399181;399182	399164			50	
TATDEAYK	1	Unmodified	897.40798	0.40797689	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			8.3812	8.1452	2	0.011304	5980	160511_QHF_FH_JSI10i_1	53.968	31.346			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49248	2470	46359	297247	399183	399183			1	
TATEEWGTEDWNEDLSETK	1	Unmodified	2239.9393	0.9393164	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.85	67.265	2	0	60939	160511_QHF_FH_JSI10i_1	404.27	393.16			0.83534	0.97619	5.5865	4	0	Linear	1.2226	0.98995	NaN	1	0	Median	0.76902	0.91245	NaN	1	0	Median	0.96907	0.96263	NaN	1	0	Median	1.0156	1.0432	NaN	1	0	Median	379520000	184530000	194990000	42215000	16086000	26129000	133160000	73797000	59367000	103010000	46112000	56894000	101130000	48536000	52597000	49249	2505	46360	297248;297249;297250;297251	399184;399185;399186;399187;399188;399189;399190;399191;399192;399193;399194	399190			11	
TATESFASDPILYR	0	Unmodified	1569.7675	0.76748745	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		62.458	61.937	2	6.4622E-10	53894	160511_QHF_FH_JSI11i_2	108.35	96.185			0.8935	0.88959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8935	0.88959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31877000	19412000	12466000	0	0	0	0	0	0	31877000	19412000	12466000	0	0	0	49250	1055	46361	297252;297253	399195;399196	399196			2	
TATESFASDPILYRPVAVALDTK	1	Unmodified	2464.285	0.28495522	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	4.7	4	12	15					1	4	6	10	13	7	90.329	88.739	2;3;4	7.7716E-74	41738	160513_QHF_FH_JSI9Kac_6	206.01	184.21			0.99125	0.99478	18.009	35	10	Median	1.1924	0.99843	13.039	6	2	Median	0.87357	1.0235	18.318	10	3	Median	0.99	0.96109	19.444	13	3	Median	1.0332	1.0999	18.655	6	2	Median	34798000000	17938000000	16860000000	9274100000	3914400000	5359700000	8068700000	4337900000	3730800000	16316000000	9154000000	7162200000	1138700000	531800000	606870000	49251	1055	46362	297254;297255;297256;297257;297258;297259;297260;297261;297262;297263;297264;297265;297266;297267;297268;297269;297270;297271;297272;297273;297274;297275;297276;297277;297278;297279;297280;297281;297282;297283;297284;297285;297286;297287;297288;297289	399197;399198;399199;399200;399201;399202;399203;399204;399205;399206;399207;399208;399209;399210;399211;399212;399213;399214;399215;399216;399217;399218;399219;399220;399221;399222;399223;399224;399225;399226;399227;399228;399229;399230;399231;399232;399233;399234;399235;399236;399237;399238;399239;399240;399241;399242;399243;399244;399245;399246;399247;399248;399249;399250;399251;399252;399253;399254;399255;399256;399257;399258;399259;399260;399261;399262;399263;399264;399265;399266;399267;399268;399269;399270;399271;399272;399273;399274;399275;399276;399277;399278;399279;399280;399281;399282;399283;399284;399285	399275			89	
TATESFASDPILYRPVAVALDTKGPEIR	1	Unmodified	3016.587	0.5869509	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	2	By MS/MS	By MS/MS			2.75	0.433		1	3							3	1			91.798	90.904	3;4	4.6489E-11	74544	160511_QHF_FH_JSI9i_3	83.881	77.653			0.48526	0.40028	37.836	4	1	Median	0.43845	0.36433	9.3607	3	1	Plateau	0.70322	0.80615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172970000	114810000	58157000	140780000	96628000	44156000	32184000	18183000	14001000	0	0	0	0	0	0	49252	1055	46363	297290;297291;297292;297293	399286;399287;399288;399289;399290;399291;399292;399293;399294;399295	399289			10	
TATFAISILQQIELDLK	1	Unmodified	1903.0666	0.066629587	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	4.12		1		1	2				7	2	4	3	2	100.25	93.023	2;3	1.0288E-97	91092	160511_QHF_FH_JSI9i_2	256.95	231.48			0.80258	0.8807	13.458	7	4	Median	1.1587	1.0032	9.6641	2	0	Median	0.75727	0.8839	0.51277	2	2	Median	0.89509	0.86073	NaN	1	1	Median	0.71829	0.76418	15.745	2	1	Median	416440000	233070000	183370000	129780000	63442000	66336000	158210000	95458000	62754000	21530000	9980700	11549000	106920000	64185000	42733000	49253	1917	46364	297294;297295;297296;297297;297298;297299;297300;297301;297302;297303;297304	399296;399297;399298;399299;399300;399301;399302;399303;399304;399305;399306;399307	399298			12	
TATFQQR	0	Unmodified	850.42972	0.42971539	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	9.1723	8.7054	2	0.013926	6399	160511_QHF_FH_JSI11i_2	67.035	32.211			1.0904	1.1423	19.952	4	0	Median	1.0218	0.87821	NaN	1	0	Median	1.1266	1.3967	NaN	1	0	Median	1.0554	1.0613	NaN	1	0	Median	1.1316	1.2295	NaN	1	0	Median	351280000	181970000	169310000	79967000	37211000	42756000	69668000	36613000	33055000	118370000	62033000	56332000	83280000	46111000	37169000	49254	4538	46365	297305;297306;297307;297308	399308;399309	399309			2	
TATGFGFAEPYNLYGSLK	1	Unmodified	1934.9414	0.94142907	137	O00459	PIK3R2	Phosphatidylinositol 3-kinase regulatory subunit beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.421	91.934	2	0.00012553	80831	160511_QHF_FH_JSI11i_2	73.466	58.435			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49255	137	46366	297309	399310	399310			1	
TATITEPR	0	Unmodified	887.47125	0.47124585	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	14.837	14.48	2	0.00042356	11992	160511_QHF_FH_JSI10i_1	119.17	85.435			0.8564	0.95563	10.312	4	0	Median	NaN	NaN	NaN	0	0	Median	0.71866	0.86095	10.798	2	0	Median	1.0294	1.0013	NaN	1	0	Median	0.91912	0.98274	NaN	1	0	Median	1018400000	514020000	504420000	0	0	0	377650000	214410000	163250000	356240000	154060000	202170000	284560000	145550000	139010000	49256	2609	46367	297310;297311;297312;297313;297314	399311;399312;399313;399314;399315;399316;399317	399315			7	
TATLRPYLSAVR	0	Acetyl (Protein N-term)	1388.7776	0.77759863	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		69.923	68.878	2	0.00022154	60329	160511_QHF_FH_JSI11i_2	78.136	29.138			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49257	1905	46368	297315;297316;297317;297318;297319	399318;399319;399320;399321;399322	399321			5	
TATPEIVDNK	1	Unmodified	1086.5557	0.55570376	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	1	3	28.47	25.273	2	2.2417E-06	22084	160511_QHF_FH_JSI10i_1	111.61	78.997			0.91847	1.023	11.482	6	1	Median	1.3705	1.1187	NaN	1	0	Median	0.89818	1.0463	NaN	1	0	Median	1.0394	1.0205	NaN	1	0	Median	0.83282	0.87343	10.989	3	1	Median	1106200000	486410000	619820000	309000000	111060000	197940000	242240000	122150000	120090000	244810000	119660000	125150000	310180000	133540000	176630000	49258	512	46369	297320;297321;297322;297323;297324;297325	399323;399324;399325;399326;399327;399328;399329;399330;399331	399326			9	
TATPQQAQEVHEK	1	Unmodified	1465.7161	0.71612058	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.2	10	8	7			6	8	4	3	7	13	14	12	13.235	9.4591	2;3	1.0103E-41	8192	160511_QHF_FH_JSI10i_1	210.31	187.97			0.97448	1.0363	28.107	45	13	Median	1.3614	1.1249	36.827	7	0	Median	0.88238	1.0415	33.186	12	5	Median	1.0239	1.0309	28.224	14	6	Median	0.94617	1.0202	9.626	12	2	Median	89350000000	40153000000	49197000000	12598000000	4710600000	7887200000	28822000000	13649000000	15174000000	30025000000	13345000000	16680000000	17905000000	8449000000	9455500000	49259	1908	46370	297326;297327;297328;297329;297330;297331;297332;297333;297334;297335;297336;297337;297338;297339;297340;297341;297342;297343;297344;297345;297346;297347;297348;297349;297350;297351;297352;297353;297354;297355;297356;297357;297358;297359;297360;297361;297362;297363;297364;297365;297366;297367;297368;297369;297370;297371	399332;399333;399334;399335;399336;399337;399338;399339;399340;399341;399342;399343;399344;399345;399346;399347;399348;399349;399350;399351;399352;399353;399354;399355;399356;399357;399358;399359;399360;399361;399362;399363;399364;399365;399366;399367;399368;399369;399370;399371;399372;399373;399374;399375;399376;399377;399378;399379;399380;399381;399382;399383;399384;399385;399386;399387;399388;399389;399390;399391;399392;399393;399394;399395;399396;399397;399398;399399;399400;399401;399402;399403;399404	399358			73	
TATPQQAQEVHEKLR	1	Acetyl (K)	1776.9119	0.91186028	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.75							5	4	2	1	4	5	1	41.773	31.92	2;3	8.0184E-53	16682	160513_QHF_FH_JSI10Kac_5	191.78	174.5			0.472	0.4512	157.61	10	1	Median	0.76244	0.64367	NaN	1	0	Median	1.4308	1.7063	3.9485	4	0	Median	0.26532	0.26053	161.81	4	1	Median	0.2922	0.31629	NaN	1	0	Median	833340000	654440000	178900000	6413300	3521600	2891700	239740000	98003000	141740000	516570000	496540000	20028000	70625000	56383000	14242000	49260	1908	46371	297372;297373;297374;297375;297376;297377;297378;297379;297380;297381;297382	399405;399406;399407;399408;399409;399410;399411;399412;399413;399414;399415;399416;399417;399418;399419;399420	399418	1910		16	
TATQLAVNK	1	Unmodified	944.5291	0.52909508	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.56	4	4	4		1	4	3			4	6	5	5	20.153	16.181	2	1.7758E-08	14233	160511_QHF_FH_JSI9i_1	151.44	100.48			0.96114	0.96065	23.313	20	5	Median	1.2968	1.0536	8.6001	4	1	Median	0.76798	0.90227	29.34	6	2	Median	0.99595	0.94493	24.88	5	1	Median	0.92755	1.0172	28.546	5	1	Median	9175400000	4653700000	4521700000	2430900000	1143700000	1287200000	2430300000	1391200000	1039100000	1860700000	861790000	998940000	2453500000	1257100000	1196400000	49261	4321	46372	297383;297384;297385;297386;297387;297388;297389;297390;297391;297392;297393;297394;297395;297396;297397;297398;297399;297400;297401;297402	399421;399422;399423;399424;399425;399426;399427;399428;399429;399430;399431;399432;399433;399434;399435;399436;399437;399438;399439;399440;399441;399442;399443;399444;399445;399446;399447;399448;399449;399450	399440			30	
TATQLAVNKIK	2	Acetyl (K)	1227.7187	0.71868677	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						1	1				1	1		54.343	44.226	2	6.4453E-07	25335	160513_QHF_FH_JSI11Kac_4	110.53	94.28			1.3041	1.3794	192.72	2	1	Median	NaN	NaN	NaN	0	0	Median	4.7173	5.3891	NaN	1	1	Median	0.36051	0.35306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17212000	12666000	4546200	0	0	0	1309700	82213	1227500	15902000	12584000	3318700	0	0	0	49262	4321	46373	297403;297404	399451;399452;399453	399451	3132		3	
TATQTGHTLLEDYQIVDNSQR	0	Unmodified	2389.151	0.15098093	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	60.022	59.612	3	1.0128E-22	51394	160511_QHF_FH_JSI12i_3	162.85	143.3			1.0316	0.99146	18.187	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0991	1.3413	NaN	1	1	Median	1.0316	0.99146	1.789	2	1	Median	0.83774	0.87547	NaN	1	0	Median	190350000	97998000	92351000	0	0	0	38025000	17764000	20261000	114310000	58925000	55384000	38015000	21309000	16706000	49263	3494	46374	297405;297406;297407;297408;297409	399454;399455;399456;399457;399458;399459;399460;399461	399461			8	
TATSLAEGLSLVVSPDSIHSVAPENEGR	0	Unmodified	2835.425	0.42503053	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	1	2	2	92.237	91.837	3	1.1754E-20	79362	160511_QHF_FH_JSI12i_3	123.53	116.95			1.0927	1.054	22.086	4	3	Median	1.0569	0.89269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4562	1.4676	NaN	1	1	Median	1.0097	1.054	12.629	2	1	Median	138080000	63885000	74191000	22164000	14982000	7182400	0	0	0	24030000	8085600	15944000	91882000	40818000	51064000	49264	4423	46375	297410;297411;297412;297413;297414;297415	399462;399463;399464;399465;399466;399467;399468;399469;399470	399470			9	
TATTQETDGFQVK	1	Unmodified	1424.6783	0.6783381	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	30.203	29.712	2	3.9434E-06	26414	160511_QHF_FH_JSI10i_1	128.88	114.21			0.70455	0.70799	18.734	6	4	Median	0.70487	0.57675	NaN	1	0	Median	0.54883	0.64487	22.969	2	2	Median	0.78899	0.74386	16.752	2	2	Median	0.79224	0.84767	NaN	1	0	Median	513710000	294520000	219190000	105290000	55329000	49958000	182040000	113800000	68247000	134140000	71775000	62366000	92237000	53619000	38618000	49265	4093	46376	297416;297417;297418;297419;297420;297421	399471;399472;399473;399474;399475;399476;399477;399478;399479	399477			9	
TATVGGAMMGSTHIYDMSTVMSR	0	Unmodified	2403.0691	0.069107257	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		74.968	74.968	3	1.6535E-24	66899	160511_QHF_FH_JSI11i_3	165.13	157.85			1.1624	1.0661	9.6331	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1624	1.0661	9.6331	2	2	Median	NaN	NaN	NaN	0	0	Median	143490000	72637000	70855000	0	0	0	0	0	0	143490000	72637000	70855000	0	0	0	49266	2412	46377	297422;297423;297424	399480;399481;399482	399481			3	
TATVVMMTR	0	Unmodified	1008.5096	0.50962197	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.204	33.162	2	0.027502	28925	160511_QHF_FH_JSI9i_2	40.724	21.247			1.3584	1.1529	NaN	1	0	Median	1.3584	1.1529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29072000	11387000	17685000	29072000	11387000	17685000	0	0	0	0	0	0	0	0	0	49267	971	46378	297425	399483	399483			1	
TATVYPEPQNK	1	Unmodified	1246.6194	0.61936665	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	4.1	5				1					2	1	1	2	22.48	21.815	2	2.4532E-07	19140	160511_QHF_FH_JSI12i_1	121.5	98.432			1.086	1.2835	40.538	5	1	Median	1.6234	1.3356	77.748	2	1	Median	1.086	1.2835	NaN	1	0	Median	1.48	1.4705	NaN	1	0	Median	1.0397	1.0748	NaN	1	0	Median	681220000	332860000	348350000	232540000	96795000	135740000	144390000	74876000	69509000	133970000	71750000	62221000	170320000	89444000	80880000	49268	1616	46379	297426;297427;297428;297429;297430;297431	399484;399485;399486;399487;399488;399489;399490	399486			7	
TATYITELANALSYCHSK	1	Unmodified	2041.9779	0.97789093	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.878	88.768	3	4.5192E-05	77127	160511_QHF_FH_JSI12i_3	87.157	73.745			1.9918	2.0187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9918	2.0187	NaN	1	1	Median	41727000	16842000	24885000	0	0	0	0	0	0	0	0	0	41727000	16842000	24885000	49269	226	46380	297432	399491	399491			1	
TAVAPIER	0	Unmodified	855.48142	0.48141661	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	5.99	4	4	4		1	4	3	4		5	7	6	6	25.063	19.989	2	9.3183E-05	12765	160513_QHF_FH_JSI12Kac_4	125.81	75.111			0.9969	1.0515	10.447	24	0	Median	1.2218	1.0235	10.322	5	0	Median	0.87763	1.0543	6.7132	7	0	Median	1.0909	1.0894	11.724	6	0	Median	0.95862	1.0302	12.625	6	0	Median	27093000000	13640000000	13453000000	5815800000	2721500000	3094300000	6383100000	3532500000	2850600000	8204500000	3855500000	4348900000	6689800000	3530300000	3159400000	49270	1014;826;1013;4626	46381	297433;297434;297435;297436;297437;297438;297439;297440;297441;297442;297443;297444;297445;297446;297447;297448;297449;297450;297451;297452;297453;297454;297455;297456	399492;399493;399494;399495;399496;399497;399498;399499;399500;399501;399502;399503;399504;399505;399506;399507;399508;399509;399510;399511;399512;399513;399514;399515;399516;399517;399518;399519;399520;399521;399522;399523	399519			32	
TAVAPIERVK	1	Unmodified	1082.6448	0.64479354	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	24.823	24.487	2;3	2.5647E-06	20340	160511_QHF_FH_JSI10i_3	87.942	60.461			0.14197	0.15175	137.3	4	2	Median	NaN	NaN	NaN	0	0	Median	0.071485	0.081782	NaN	1	0	Median	0.017674	0.016605	NaN	1	1	Median	0.2973	0.29861	8.3114	2	1	Median	480140000	419540000	60603000	0	0	0	111230000	105290000	5940400	142600000	137860000	4738600	226320000	176400000	49924000	49271	1014;826;1013;4626	46382	297457;297458;297459;297460	399524;399525;399526	399525			3	
TAVAPSAVNLADPR	0	Unmodified	1380.7361	0.73612775	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	50.195	49.517	2;3	1.121E-14	45105	160511_QHF_FH_JSI12i_1	159.99	136			1.0905	1.068	14.38	8	0	Median	1.356	1.1088	23.468	2	0	Median	0.87921	1.0356	5.7809	2	0	Median	1.2352	1.212	19.327	2	0	Median	0.99647	1.043	13.095	2	0	Median	1011900000	502490000	509380000	239370000	111220000	128150000	225050000	122600000	102450000	297840000	141640000	156200000	249620000	127040000	122580000	49272	5474	46383	297461;297462;297463;297464;297465;297466;297467;297468	399527;399528;399529;399530;399531;399532;399533;399534;399535;399536;399537;399538	399532			12	
TAVCDIPPR	0	Unmodified	1027.5121	0.51206481	2075;872;2477;811;2824	P07437;A6NNZ2;P68371;Q13885;Q9BVA1;Q3ZCM7;P04350	TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB8;TUBB4A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain;Tubulin beta-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.55	28	2				8	4			4	11	15	12	31.969	29.194	2	1.4006E-05	25957	160511_QHF_FH_JSI11i_1	109.71	91.311			1.0852	1.1406	43.323	22	13	Median	1.2638	1.0671	11.022	2	1	Median	0.98607	1.1257	29.023	8	5	Median	0.98972	0.95862	65.416	6	3	Median	1.2915	1.3982	15.095	6	4	Median	2700000000	1420400000	1279600000	128990000	57282000	71710000	1034300000	558910000	475340000	862940000	486190000	376750000	673830000	318000000	355830000	49273	872;2075;2477;2824;811	46384	297469;297470;297471;297472;297473;297474;297475;297476;297477;297478;297479;297480;297481;297482;297483;297484;297485;297486;297487;297488;297489;297490;297491;297492;297493;297494;297495;297496;297497;297498;297499;297500;297501;297502;297503;297504;297505;297506;297507;297508;297509;297510	399539;399540;399541;399542;399543;399544;399545;399546;399547;399548;399549;399550;399551;399552;399553;399554;399555;399556;399557;399558;399559;399560;399561;399562;399563;399564;399565;399566;399567;399568;399569;399570;399571;399572;399573;399574;399575;399576;399577;399578;399579;399580;399581;399582;399583;399584;399585	399541			47	
TAVDGPDLEMLTGQER	0	Unmodified	1730.8145	0.814514	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	72.209	71.701	2;3	3.2843E-52	64909	160511_QHF_FH_JSI10i_1	255.24	243.37			0.89445	0.94676	15.283	7	2	Median	1.2833	1.0602	18.578	2	0	Median	0.79324	0.90761	16.14	2	1	Median	0.91801	0.88771	20.528	2	1	Median	0.89445	0.94676	NaN	1	0	Median	1007600000	506740000	500880000	258190000	122060000	136130000	229200000	119200000	110000000	310520000	156180000	154340000	209700000	109300000	100400000	49274	2528	46385	297511;297512;297513;297514;297515;297516;297517	399586;399587;399588;399589;399590;399591;399592;399593;399594;399595;399596;399597	399593			12	
TAVDSGIPLLTNFQVTK	1	Unmodified	1802.9778	0.97781458	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.8	8	9	8							6	7	7	5	96.783	96.491	2;3	2.2456E-81	87663	160511_QHF_FH_JSI11i_1	212.39	206.41			0.93875	0.99052	19.728	19	1	Median	1.2139	0.97694	5.3008	5	0	Median	0.83736	0.99846	35.897	6	1	Median	0.96336	0.9537	5.1988	4	0	Median	1.0068	1.0542	5.4689	4	0	Linear	2780500000	1471300000	1309200000	557200000	264100000	293100000	997110000	564120000	432980000	649940000	340600000	309340000	576260000	302460000	273800000	49275	1372	46386	297518;297519;297520;297521;297522;297523;297524;297525;297526;297527;297528;297529;297530;297531;297532;297533;297534;297535;297536;297537;297538;297539;297540;297541;297542	399598;399599;399600;399601;399602;399603;399604;399605;399606;399607;399608;399609;399610;399611;399612;399613;399614;399615;399616;399617;399618;399619;399620;399621;399622;399623;399624;399625;399626;399627;399628;399629;399630;399631;399632;399633;399634;399635;399636;399637;399638;399639;399640;399641;399642;399643;399644;399645;399646;399647;399648;399649;399650;399651;399652;399653;399654;399655;399656;399657;399658;399659	399606			62	
TAVDSGIPLLTNFQVTKLFAEAVQK	2	Acetyl (K)	2731.4796	0.47963228	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		99.561	90.145	3	2.0863E-14	51724	160513_QHF_FH_JSI11Kac_6	151.06	137.87			0.21803	0.20952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21803	0.20952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30243000	26810000	3432700	0	0	0	0	0	0	30243000	26810000	3432700	0	0	0	49276	1372	46387	297543	399660	399660	1313		1	
TAVDSLVAYSVK	1	Unmodified	1251.6711	0.67106787	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	4.92	1		1			2	3	3		2	2	3	3	68.827	60.043	2;3	3.851E-40	32817	160513_QHF_FH_JSI11Kac_4	201.48	157.71			1.022	0.97929	40.228	6	1	Median	1.0929	0.92907	NaN	1	0	Median	0.8437	1.0077	NaN	1	0	Median	0.96194	0.95167	NaN	1	0	Median	1.0859	1.182	60.963	3	1	Median	75810000	39828000	35981000	4717000	2787400	1929500	18906000	10191000	8714700	26184000	13845000	12339000	26003000	13005000	12998000	49277	2252	46388	297544;297545;297546;297547;297548;297549;297550;297551;297552;297553	399661;399662;399663;399664;399665;399666;399667;399668;399669;399670	399667			10	
TAVETAVLLLR	0	Unmodified	1184.7129	0.71287311	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.54	3	4	4				2	6	3	5	6	6	5	77.993	72.831	2	1.2323E-72	65666	160511_QHF_FH_JSI11i_2	242.08	229.04			0.96794	0.9989	11.59	21	4	Median	1.2273	1.0248	13.879	4	2	Median	0.83571	1.003	8.8667	6	0	Median	1.0287	0.99255	12.154	6	1	Median	0.96794	1.0664	15.224	5	1	Median	6060100000	2994000000	3066200000	1159800000	483460000	676330000	1251600000	677130000	574430000	2083500000	1004400000	1079200000	1565300000	829040000	736210000	49278	1655	46389	297554;297555;297556;297557;297558;297559;297560;297561;297562;297563;297564;297565;297566;297567;297568;297569;297570;297571;297572;297573;297574;297575	399671;399672;399673;399674;399675;399676;399677;399678;399679;399680;399681;399682;399683;399684;399685;399686;399687;399688;399689;399690;399691;399692;399693;399694;399695;399696	399684			24	
TAVFGFETSEAK	1	Unmodified	1285.619	0.6190323	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	3	2	2	57.576	55.679	2	8.4772E-05	50320	160511_QHF_FH_JSI11i_1	92.611	77.46			1.0728	1.1396	11.633	9	0	Median	1.3091	1.1108	3.6216	2	0	Median	1.1153	1.3044	8.3587	3	0	Median	1.0594	1.0546	3.401	2	0	Median	0.97098	1.0648	12.117	2	0	Median	653480000	309690000	343800000	130340000	53466000	76870000	138840000	71257000	67585000	231120000	109220000	121900000	153190000	75746000	77444000	49279	2573	46390	297576;297577;297578;297579;297580;297581;297582;297583;297584	399697;399698;399699;399700;399701;399702;399703;399704;399705;399706;399707;399708;399709;399710;399711;399712;399713	399698			17	
TAVHAGNINFK	1	Acetyl (Protein N-term)	1212.6251	0.62512073	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.37	4	4	1				3			3	3	3	3	45.873	42.543	2	8.499E-10	36393	160511_QHF_FH_JSI12i_2	84.498	65.404			0.33146	0.3733	90.899	12	8	Median	1.9925	1.7255	136.35	3	1	Plateau	0.29853	0.3488	52.386	3	3	Median	0.24033	0.23413	102.39	3	2	Median	0.36802	0.39951	103.26	3	2	Median	1486700000	852670000	634040000	331500000	113110000	218390000	338870000	239590000	99277000	496340000	289190000	207150000	320010000	210780000	109220000	49280	1421	46391	297585;297586;297587;297588;297589;297590;297591;297592;297593;297594;297595;297596	399714;399715;399716;399717;399718;399719;399720;399721;399722;399723;399724	399715			11	
TAVIDHHNYDISDLGQHTLIVADTENLLK	1	Unmodified	3244.6364	0.63642029	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			10									2	8	93.135	93.113	4;5	4.5516E-13	80630	160511_QHF_FH_JSI12i_3	84.948	79.573			0.97709	0.99329	24.128	10	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90527	0.82765	42.545	2	0	Median	0.97709	0.99329	21.124	8	3	Median	399600000	200210000	199390000	0	0	0	0	0	0	61711000	32523000	29188000	337890000	167690000	170200000	49281	1486	46392	297597;297598;297599;297600;297601;297602;297603;297604;297605;297606	399725;399726;399727;399728;399729;399730;399731;399732;399733;399734;399735;399736	399728			12	
TAVISIGNQLLHLK	1	Unmodified	1505.893	0.89296274	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		83.604	82.771	3	0.0016025	73594	160511_QHF_FH_JSI11i_3	52.191	47.8			1.1446	1.0063	19.402	3	1	Plateau	1.4179	1.1438	NaN	1	0	Median	1.1446	1.2953	NaN	1	1	Median	0.95472	0.88535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154850000	63859000	90995000	54746000	16437000	38309000	31618000	15197000	16421000	68489000	32224000	36265000	0	0	0	49282	3811	46393	297607;297608;297609	399737;399738	399737			2	
TAVLLALAAYGAHK	1	Unmodified	1397.8031	0.8030851	1406	P33897	ABCD1	ATP-binding cassette sub-family D member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.544	72.286	3	1.2824E-05	39516	160513_QHF_FH_JSI11Kac_6	99.011	83.623			1.1332	1.1331	58.996	4	0	Median	3.2928	2.8247	NaN	1	0	Median	0.6474	0.75765	NaN	1	0	Median	0.93701	0.89331	NaN	1	0	Median	1.3705	1.4372	NaN	1	0	Median	211990000	95563000	116430000	53751000	14514000	39238000	69602000	43191000	26410000	51096000	23576000	27520000	37546000	14282000	23264000	49283	1406	46394	297610;297611;297612;297613	399739;399740;399741;399742;399743;399744	399739			5	
TAVLTAFANGR	0	Unmodified	1119.6037	0.60365701	758	O96019	ACTL6A	Actin-like protein 6A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.36		2	4					3	2	3	4	2	2	56.363	50.783	2	8.6907E-20	43327	160511_QHF_FH_JSI12i_3	144.5	126.51			0.96708	0.96113	17.884	10	3	Median	1.1564	1.0167	11.98	3	2	Plateau	0.90514	1.0346	23.086	4	0	Median	1.1224	1.0981	20.716	2	0	Median	0.8254	0.84313	NaN	1	1	Median	701590000	365250000	336340000	288620000	139200000	149420000	292740000	162180000	130550000	22817000	10587000	12230000	97413000	53280000	44133000	49284	758	46395	297614;297615;297616;297617;297618;297619;297620;297621;297622;297623;297624	399745;399746;399747;399748;399749;399750;399751;399752;399753;399754;399755	399755			11	
TAVPSFLTK	1	Unmodified	962.54368	0.54368251	4208	Q96QD9	FYTTD1	UAP56-interacting factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	56.442	55.909	2	0.0019789	48399	160511_QHF_FH_JSI11i_2	66.692	51.077			0.32133	0.32211	47.912	5	2	Median	0.30243	0.26014	NaN	1	0	Median	0.19988	0.24682	NaN	1	0	Median	0.47493	0.45932	50.183	2	1	Median	0.64725	0.63654	NaN	1	1	Median	254750000	166040000	88700000	38169000	24075000	14093000	59294000	45769000	13525000	111650000	70143000	41509000	45631000	26058000	19574000	49285	4208	46396	297625;297626;297627;297628;297629	399756;399757;399758;399759	399758			4	
TAVSCLSQNDWK	1	Unmodified	1407.6453	0.64526383	4091	Q96GG9	DCUN1D1	DCN1-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	43.908	43.425	2	0.0037804	37280	160511_QHF_FH_JSI11i_2	64.374	38.9			2.5286	2.692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5286	2.692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38957000	9713100	29244000	0	0	0	0	0	0	38957000	9713100	29244000	0	0	0	49286	4091	46397	297630;297631	399760;399761	399761			2	
TAVSGIRPENLK	1	Unmodified	1283.7197	0.7197494	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			33.176	31.775	3	0.00072749	26539	160511_QHF_FH_JSI10i_3	49.423	34.051			0.83333	0.94835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83333	0.94835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109510000	65448000	44059000	0	0	0	109510000	65448000	44059000	0	0	0	0	0	0	49287	4602	46398	297632	399762	399762			1	
TAVSSELRTEVEENQK	1	Unmodified	1818.8959	0.89593544	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	36.93	36.283	3	5.2983E-06	31830	160511_QHF_FH_JSI10i_2	119.56	107			1.0192	1.0239	3.604	4	0	Median	1.1132	0.96546	NaN	1	0	Median	0.84499	1.0233	NaN	1	0	Median	1.02	1.0246	NaN	1	0	Median	1.0184	1.0514	NaN	1	0	Median	522920000	261490000	261430000	106160000	39334000	66828000	198340000	116330000	82007000	72489000	31722000	40767000	145920000	74099000	71825000	49288	5135	46399	297633;297634;297635;297636	399763;399764;399765;399766;399767;399768;399769;399770	399768			8	
TAVTGSLSENDPLR	0	Unmodified	1458.7314	0.7314363	3638	Q8NEJ9	NGDN	Neuroguidin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.489	47.808	2	3.5081E-06	43221	160511_QHF_FH_JSI11i_1	124.6	105.85			0.72612	0.73011	30.497	4	4	Median	0.63947	0.52016	NaN	1	1	Median	0.58712	0.68213	NaN	1	1	Median	0.82452	0.78147	NaN	1	1	Median	1.0422	1.0831	NaN	1	1	Median	196370000	110260000	86109000	42892000	21733000	21159000	48954000	32143000	16812000	62677000	36576000	26101000	41847000	19810000	22037000	49289	3638	46400	297637;297638;297639;297640	399771;399772;399773;399774	399771			4	
TAVTTVPSMGIGLVK	1	Unmodified	1472.8273	0.82725094	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.05	3.89	8	6	4				1	1		5	4	7	4	76.702	75.053	2;3	3.7698E-21	66749	160511_QHF_FH_JSI9i_2	169.58	161.36			0.95408	0.97221	19.72	20	6	Median	1.2772	1.0826	10.724	5	3	Median	0.80671	1.0783	16.812	4	0	Linear	0.98739	0.9503	29.498	7	1	Median	0.87814	0.92667	7.512	4	2	Median	2066000000	1077400000	988590000	393050000	177510000	215540000	500940000	281480000	219460000	757450000	391320000	366130000	414590000	227130000	187460000	49290	3763	46401	297641;297642;297643;297644;297645;297646;297647;297648;297649;297650;297651;297652;297653;297654;297655;297656;297657;297658;297659;297660	399775;399776;399777;399778;399779;399780;399781;399782;399783;399784;399785;399786;399787;399788;399789;399790;399791;399792;399793;399794;399795;399796;399797;399798;399799;399800;399801;399802;399803;399804;399805	399794			30	
TAVVIDLGEAFTK	1	Unmodified	1362.7395	0.73948179	5143	Q9NZ32	ACTR10	Actin-related protein 10	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.043	87.09	2	0.0023261	75236	160511_QHF_FH_JSI12i_2	68.069	57.239			0.69357	0.75062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69357	0.75062	NaN	1	1	Median	12587000	6399600	6187000	0	0	0	0	0	0	0	0	0	12587000	6399600	6187000	49291	5143	46402	297661	399806	399806			1	
TAVVTGANSGIGK	1	Unmodified	1173.6354	0.63535107	3157	Q6UX07	DHRS13	Dehydrogenase/reductase SDR family member 13	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	26.754	25.496	2	0.0024601	22021	160511_QHF_FH_JSI9i_1	67.153	39.14			1.5992	1.2729	NaN	1	1	Median	1.5992	1.2729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11541000	4859900	6681200	11541000	4859900	6681200	0	0	0	0	0	0	0	0	0	49292	3157	46403	297662;297663	399807;399808	399808			2	
TAVVVGTITDDVR	0	Unmodified	1344.7249	0.72489436	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.74	8	4	4	1	3	10	10	7	4	13	16	8	14	61.889	54.361	2;3	3.1682E-128	30393	160513_QHF_FH_JSI10Kac_4	275.57	189.9			0.95525	0.99993	46.521	48	7	Median	1.2451	1.0415	79.975	13	1	Median	0.85579	1.0169	28.722	15	2	Median	0.9972	0.96741	10.917	8	1	Median	0.90047	0.9653	31.826	12	3	Median	16343000000	8239100000	8104000000	3156100000	1358500000	1797600000	4358700000	2385900000	1972800000	4517700000	2251300000	2266400000	4310600000	2243500000	2067200000	49293	2250	46404	297664;297665;297666;297667;297668;297669;297670;297671;297672;297673;297674;297675;297676;297677;297678;297679;297680;297681;297682;297683;297684;297685;297686;297687;297688;297689;297690;297691;297692;297693;297694;297695;297696;297697;297698;297699;297700;297701;297702;297703;297704;297705;297706;297707;297708;297709;297710;297711;297712;297713;297714	399809;399810;399811;399812;399813;399814;399815;399816;399817;399818;399819;399820;399821;399822;399823;399824;399825;399826;399827;399828;399829;399830;399831;399832;399833;399834;399835;399836;399837;399838;399839;399840;399841;399842;399843;399844;399845;399846;399847;399848;399849;399850;399851;399852;399853;399854;399855;399856;399857;399858;399859;399860;399861;399862;399863;399864;399865;399866;399867;399868;399869;399870;399871;399872;399873;399874;399875;399876;399877;399878;399879;399880;399881;399882	399826			74	
TAVVVGTITDDVRVQEVPK	1	Unmodified	2025.1106	0.11061967	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	67.792	67.09	3	5.3334E-08	57855	160511_QHF_FH_JSI12i_3	104.89	95.962			0.97999	1.1571	37.388	6	0	Plateau	1.4225	1.2218	NaN	1	0	Median	1.5535	1.8634	52.05	2	0	Median	1.0973	1.0959	NaN	1	0	Median	0.95098	1.0017	0.37967	2	0	Median	765490000	381000000	384490000	86077000	32260000	53818000	237310000	120000000	117300000	88183000	40402000	47782000	353920000	188330000	165590000	49294	2250	46405	297715;297716;297717;297718;297719;297720	399883;399884;399885;399886;399887;399888;399889;399890;399891;399892;399893	399892			11	
TAVWEEGPGGELVIQQK	1	Unmodified	1839.9367	0.93667805	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	71.308	70.898	2;3	2.6006E-12	64259	160511_QHF_FH_JSI10i_1	180.09	156.34			0.34205	0.37278	45.076	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43911	0.51272	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26644	0.27104	NaN	1	1	Median	57717000	41778000	15940000	0	0	0	28916000	21306000	7609900	0	0	0	28801000	20471000	8330000	49295	549	46406	297721;297722;297723	399894;399895;399896	399896			3	
TAVYHEILIGYLEYVK	1	Unmodified	1910.019	0.018951113	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		87.853	78.879	3	6.5944E-05	44066	160513_QHF_FH_JSI11Kac_6	82.837	58.55			1.1387	1.0084	6.6878	2	1	Median	1.2368	1.0572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0483	0.96181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129110000	60491000	68621000	71235000	29876000	41360000	0	0	0	57877000	30615000	27261000	0	0	0	49296	2285;3886	46407	297724;297725	399897;399898;399899	399897			3	
TAVYSLHK	1	Unmodified	917.49707	0.49706667	4960	Q9NRN9	METTL5	Methyltransferase-like protein 5	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	3	0			5							1		2	2	18.696	18.409	2;3	0.0051729	15432	160511_QHF_FH_JSI11i_3	64.265	36.158			1.2845	1.2239	27.898	4	2	Median	1.8405	1.4847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6694	1.5239	NaN	1	1	Median	0.90911	0.93838	10.252	2	1	Median	215850000	94216000	121630000	18210000	6408900	11801000	0	0	0	40733000	13922000	26811000	156900000	73885000	83018000	49297	4960	46408	297726;297727;297728;297729;297730	399900;399901;399902;399903	399901			3	
TAVYSLHKSSTR	1	Acetyl (K)	1390.7205	0.72047768	4960	Q9NRN9	METTL5	Methyltransferase-like protein 5	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			34.178	25.708	3	0.027572	14598	160513_QHF_FH_JSI10Kac_6	41.092	34.363			0.44194	0.52187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44194	0.52187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4053000	2939900	1113100	0	0	0	4053000	2939900	1113100	0	0	0	0	0	0	49298	4960	46409	297731	399904	399904			1	
TAWGQQPDLAANEAQLLR	0	Unmodified	1981.0017	0.0017379196	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								4	3	2	2	76.344	75.745	2	1.5997E-16	68574	160511_QHF_FH_JSI10i_1	194.24	164.94			0.88808	0.88841	10.217	7	6	Median	1.0451	0.8813	12.084	2	2	Median	0.85483	0.98646	8.0165	2	2	Median	0.86733	0.84681	6.7829	2	1	Median	0.73313	0.80243	NaN	1	1	Median	146350000	72957000	73391000	24404000	12472000	11932000	60636000	30834000	29802000	46590000	20599000	25991000	14719000	9052600	5666800	49299	5441	46410	297732;297733;297734;297735;297736;297737;297738;297739;297740;297741;297742	399905;399906;399907;399908;399909;399910;399911;399912;399913;399914;399915;399916	399908			12	
TAWGQQPDLAANEAQLLRK	1	Unmodified	2109.0967	0.096700937	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	68.278	67.583	3	1.0669E-24	60011	160511_QHF_FH_JSI11i_3	169.49	160.49			0.93125	0.81746	19.352	5	0	Median	0.96238	0.81746	NaN	1	0	Median	0.78339	0.94078	32.916	2	0	Median	0.80723	0.76258	NaN	1	0	Median	0.93125	0.95437	NaN	1	0	Median	1160000000	639490000	520470000	166550000	74601000	91947000	625330000	366920000	258410000	270170000	142480000	127690000	97917000	55489000	42428000	49300	5441	46411	297743;297744;297745;297746;297747	399917;399918;399919;399920;399921;399922;399923	399918			7	
TAWLDGK	1	Unmodified	789.4021	0.40210366	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.61	5	7	5				2	4		5	6	7	5	34.548	30.531	2	0.0026172	16178	160513_QHF_FH_JSI12Kac_5	102.71	59.713			0.97478	0.97767	22.679	17	5	Median	1.0277	0.8506	18.278	4	1	Median	0.9545	1.1171	14.49	4	3	Median	1.1753	1.1872	25.217	4	1	Median	0.8798	0.93564	19.033	5	0	Median	14880000000	7403100000	7476600000	2767400000	1342800000	1424600000	3779100000	2185800000	1593300000	4483500000	2036900000	2446700000	3849500000	1837600000	2012000000	49301	1224	46412	297748;297749;297750;297751;297752;297753;297754;297755;297756;297757;297758;297759;297760;297761;297762;297763;297764;297765;297766;297767;297768;297769;297770	399924;399925;399926;399927;399928;399929;399930;399931;399932;399933;399934;399935;399936;399937;399938;399939;399940;399941;399942;399943;399944;399945;399946;399947;399948;399949;399950;399951;399952	399948			29	
TAWLDGKHVVFGK	2	Acetyl (K)	1498.7932	0.79324869	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									5		2	2	1	76.311	68.144	2;3	1.7813E-26	36797	160513_QHF_FH_JSI11Kac_6	174.39	164.86			0.28939	0.27774	108.97	5	1	Median	NaN	NaN	NaN	0	0	Median	1.446	1.7009	2.0883	2	1	Median	0.27627	0.26532	6.4688	2	0	Median	0.17957	0.18843	NaN	1	0	Median	974690000	651280000	323410000	0	0	0	273570000	106760000	166810000	663410000	513850000	149560000	37722000	30673000	7049000	49302	1224	46413	297771;297772;297773;297774;297775	399953;399954;399955;399956;399957;399958;399959	399953	1097;1101		7	
TAWNPLGEAAPPGELYR	0	Unmodified	1840.9108	0.91079765	4490	Q9BW71	HIRIP3	HIRA-interacting protein 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		81.254	80.634	2	0.00087767	70926	160511_QHF_FH_JSI11i_2	78.814	54.963			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49303	4490	46414	297776	399960	399960			1	
TAWTDLLR	0	Unmodified	974.51853	0.5185304	3374	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.361	72.736	2	0.047995	63836	160511_QHF_FH_JSI11i_2	46.426	18.252			1.4956	1.4566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4956	1.4566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8201200	3510700	4690500	0	0	0	0	0	0	8201200	3510700	4690500	0	0	0	49304	3374	46415	297777	399961	399961			1	
TAWVFDDK	1	Unmodified	980.46035	0.46034682	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	52.839	52.076	2	0.00024184	47348	160511_QHF_FH_JSI12i_1	117.04	89.511			1.0277	0.99119	10.793	6	0	Median	1.2236	0.99638	NaN	1	0	Median	1.0385	1.2339	NaN	1	0	Median	1.0396	1.0382	7.2909	2	0	Median	0.88928	0.94226	5.71	2	0	Median	1122700000	565010000	557720000	48250000	25637000	22612000	174670000	84466000	90208000	556580000	285160000	271410000	343230000	169750000	173490000	49305	832	46416	297778;297779;297780;297781;297782;297783	399962;399963;399964;399965;399966;399967;399968;399969;399970;399971	399966			10	
TAWVFDDKYK	2	Acetyl (K)	1313.6292	0.62920306	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	75.9	65.354	2	0.0083014	34761	160513_QHF_FH_JSI11Kac_5	61.65	47.88			0.71134	0.77925	41.668	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0705	1.2691	NaN	1	0	Median	0.56781	0.55392	NaN	1	0	Median	0.71134	0.77925	NaN	1	0	Median	10409000	5669600	4739100	0	0	0	2546900	1250900	1296100	6160600	3424400	2736200	1701100	994330	706800	49306	832	46417	297784;297785;297786	399972;399973	399972	483		2	
TAYGPNGMNK	1	Oxidation (M)	1067.4706	0.47059393	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.82	6					2	1			1	1	4	3	11.351	8.6818	2	0.00017039	6035	160511_QHF_FH_JSI9i_1	84.568	74.154			1.0571	1.1513	11.938	9	2	Median	1.3681	1.1106	NaN	1	0	Median	1.0381	1.186	NaN	1	0	Median	1.1594	1.1199	18.415	4	1	Median	1.0517	1.1513	5.2367	3	1	Median	659630000	312730000	346900000	82194000	30205000	51989000	118500000	56825000	61670000	246170000	121080000	125090000	212770000	104610000	108150000	49307	1721	46418	297787;297788;297789;297790;297791;297792;297793;297794;297795	399974;399975;399976;399977;399978;399979;399980;399981;399982;399983;399984	399983		1402	11	
TAYGPNGMNK	1	Unmodified	1051.4757	0.4756793	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.48	3	4	1				3			3	3	3	2	18.578	15.826	2	1.24E-05	13379	160511_QHF_FH_JSI11i_1	143.12	123.42			0.91509	0.92118	35.118	11	7	Median	1.0249	0.81825	39.554	3	3	Median	0.91509	1.0807	24.318	3	2	Median	0.63485	0.60862	44.476	3	2	Median	0.8921	0.99493	10.891	2	0	Median	3772600000	2391100000	1381400000	1360000000	929040000	431010000	1107300000	659320000	448030000	1228400000	759690000	468710000	76797000	43108000	33689000	49308	1721	46418	297796;297797;297798;297799;297800;297801;297802;297803;297804;297805;297806	399985;399986;399987;399988;399989;399990;399991;399992;399993;399994;399995;399996	399985			12	
TAYGPNGMNKMVINHLEK	2	Acetyl (K)	2058.0027	0.002665897	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.366	62.947	3	1.3319E-07	34152	160513_QHF_FH_JSI11Kac_6	161.51	146.31			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53545000	53545000	0	0	0	0	0	0	0	53545000	53545000	0	0	0	0	49309	1721	46419	297807	399997	399997	1735;1737		1	
TAYLLYYR	0	Unmodified	1061.5546	0.55458155	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.64							1	5	6	3	5	2	2	67.455	57.383	2	2.5715E-32	29890	160513_QHF_FH_JSI12Kac_6	191.03	172.3			1.1447	1.2522	22.922	10	3	Median	1.4975	1.2645	5.3606	2	1	Median	1.0325	1.2166	26.719	4	1	Median	1.4561	1.4225	42.98	2	1	Median	1.0848	1.1674	17.736	2	0	Median	2696600000	1196000000	1500600000	513100000	200700000	312400000	1082600000	496580000	586020000	573220000	256090000	317130000	527650000	242640000	285010000	49310	2567	46420	297808;297809;297810;297811;297812;297813;297814;297815;297816;297817;297818;297819	399998;399999;400000;400001;400002;400003;400004;400005;400006;400007;400008;400009;400010;400011;400012	400010			15	
TAYSGGAEDLER	0	Unmodified	1267.5681	0.56805936	5564	Q9Y388	RBMX2	RNA-binding motif protein, X-linked 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		24.814	24.316	2	0.0081749	21048	160511_QHF_FH_JSI9i_1	50.284	31.972			0.91153	0.937	19.048	4	2	Median	1.1266	0.93395	NaN	1	0	Median	0.70189	0.80975	29.584	2	2	Median	0.97255	0.94006	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90247000	46043000	44204000	22414000	9099600	13314000	38674000	23354000	15321000	29159000	13589000	15569000	0	0	0	49311	5564	46421	297820;297821;297822;297823	400013;400014;400015;400016;400017	400017			5	
TAYSYFYEAFEGYDSIDSPK	1	Unmodified	2352.011	0.011024781	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0				By MS/MS	9	7		1							1				2	89.642	80.2	2;3	5.7617E-10	43092	160513_QHF_FH_JSI12Kac_6	111.27	107.88			0.89435	0.93822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89435	0.93822	NaN	1	0	Median	18556000	10094000	8462100	0	0	0	0	0	0	0	0	0	18556000	10094000	8462100	49312	109	46422	297824;297825	400018;400019	400019			2	
TCAAQLVSYPGK	1	Unmodified	1293.6387	0.63872189	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			2	1	2	1	46.464	43.761	2	2.6881E-06	39625	160511_QHF_FH_JSI11i_1	125.22	86.924			0.56576	0.5774	42.283	5	2	Median	0.56576	0.47044	NaN	1	1	Median	0.49795	0.5774	NaN	1	1	Median	0.74785	0.72246	53.191	2	0	Median	1.1063	1.1373	NaN	1	0	Median	410650000	241670000	168980000	45403000	26983000	18419000	102440000	67698000	34738000	161250000	103620000	57627000	101560000	43364000	58200000	49313	2284	46423	297826;297827;297828;297829;297830;297831	400020;400021;400022;400023;400024;400025;400026;400027	400021			8	
TCEESSFCK	1	Unmodified	1146.4322	0.43215951	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	14.908	13.154	2	3.1741E-05	11072	160511_QHF_FH_JSI12i_1	101.64	89.017			1.1193	1.1563	16.682	5	0	Median	1.403	1.1563	NaN	1	0	Median	0.80423	0.93042	NaN	1	0	Median	0.96969	0.9512	NaN	1	0	Median	1.1885	1.2833	11.22	2	0	Median	791250000	431770000	359480000	121370000	45690000	75683000	204930000	119170000	85758000	253520000	168430000	85094000	211430000	98486000	112940000	49314	2569	46424	297832;297833;297834;297835;297836	400028;400029;400030;400031;400032;400033;400034;400035;400036	400030			9	
TCFIILSK	1	Unmodified	980.53649	0.53648865	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.05		1					1	4	4	2	3	3	2	71.484	62.601	2	0.0026253	32468	160513_QHF_FH_JSI9Kac_5	89.698	32.417			1.1527	1.095	26.193	10	2	Median	1.1726	0.99832	1.9474	2	0	Median	1.2188	1.4407	17.78	3	1	Median	1.0071	0.95388	11.977	3	1	Median	1.4389	1.5924	33.559	2	0	Median	192890000	98378000	94510000	22072000	10516000	11556000	37933000	18091000	19842000	112220000	59578000	52647000	20658000	10193000	10465000	49315	344	46425	297837;297838;297839;297840;297841;297842;297843;297844;297845;297846	400037;400038;400039;400040;400041;400042;400043;400044	400037			8	
TCFSPNR	0	Unmodified	880.38614	0.38613602	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.29	0.7	1	3	3								2	3	2	13.934	13.562	2	0.011468	10958	160511_QHF_FH_JSI11i_3	70.912	35.807			1.1039	1.1657	27.074	7	1	Median	NaN	NaN	NaN	0	0	Median	1.2924	1.5226	18.175	2	1	Median	1.1099	1.0376	15.724	3	0	Plateau	1.2073	1.287	13.993	2	0	Median	513810000	243040000	270770000	0	0	0	99464000	46895000	52569000	243530000	119900000	123630000	170810000	76247000	94567000	49316	120	46426	297847;297848;297849;297850;297851;297852;297853	400045;400046;400047;400048;400049	400045			5	
TCFYAEQGGQIYDEGYLVK	1	Unmodified	2240.0096	0.0095849934	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	75.5	74.945	3	6.8169E-05	68282	160511_QHF_FH_JSI12i_1	81.51	69.888			1.5775	1.6553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5775	1.6553	NaN	1	1	Median	20713000	8923200	11790000	0	0	0	0	0	0	0	0	0	20713000	8923200	11790000	49317	1664	46427	297854	400050	400050			1	
TCGDVLDNLK	1	Unmodified	1133.5387	0.53867349	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	45.95	45.323	2	0.00067056	41164	160511_QHF_FH_JSI12i_1	85.29	67.905			1.2296	1.455	36.448	5	5	Median	2.408	2.0012	NaN	1	1	Median	1.0572	1.2392	22.7	2	2	Median	0.79046	0.78433	NaN	1	1	Median	1.4933	1.5627	NaN	1	1	Median	569700000	265830000	303870000	44539000	16466000	28073000	227810000	114450000	113350000	134460000	70401000	64056000	162890000	64511000	98383000	49318	1784	46428	297855;297856;297857;297858;297859	400051;400052;400053;400054;400055	400052			5	
TCGFDFGGNIIMFSTDK	1	Unmodified	1908.8386	0.83862026	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.25	100.08	2	1.6971E-05	86087	160511_QHF_FH_JSI12i_2	101.53	92.02			0.95506	1.0274	11.951	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90902	0.94414	NaN	1	0	Median	1.0034	1.118	NaN	1	1	Median	34400000	19005000	15394000	0	0	0	0	0	0	22690000	12491000	10199000	11710000	6514800	5195200	49319	2391	46429	297860;297861	400056;400057;400058;400059	400057			4	
TCGFDFTGAVEDISK	1	Unmodified	1645.7294	0.72938739	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			81.458	81.302	2	1.6895E-06	73947	160511_QHF_FH_JSI10i_1	127.02	99.689			0.40086	0.4761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.40086	0.4761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	414680000	277230000	137450000	0	0	0	414680000	277230000	137450000	0	0	0	0	0	0	49320	773	46430	297862	400060	400060			1	
TCHSFIINEK	1	Unmodified	1247.5969	0.59685707	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	1	1	4	3	29.588	26.418	2;3	3.1323E-06	22351	160511_QHF_FH_JSI11i_3	87.568	77.881			0.94781	0.95784	24.762	9	0	Median	1.4263	1.2257	NaN	1	0	Median	0.8041	0.95784	NaN	1	0	Median	0.84603	0.80347	7.3205	4	0	Median	1.0609	1.0673	28.554	3	0	Median	1124000000	555270000	568710000	43605000	23311000	20294000	8227000	3996600	4230400	618740000	324020000	294720000	453410000	203940000	249470000	49321	40	46431	297863;297864;297865;297866;297867;297868;297869;297870;297871	400061;400062;400063;400064;400065;400066;400067;400068;400069;400070;400071	400062			11	
TCLDNLASK	1	Unmodified	1020.491	0.49099502	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.038	29.809	2	0.0081794	26598	160511_QHF_FH_JSI11i_1	53.327	31.241			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49322	1600	46432	297872	400072	400072			1	
TCLHAILNILEK	1	Unmodified	1423.7857	0.78572048	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		82.381	81.758	3	6.9472E-05	72681	160511_QHF_FH_JSI11i_3	74.537	66.858			1.7133	1.7612	3.0223	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6044	1.7993	NaN	1	0	Median	1.8295	1.724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53841000	23010000	30831000	0	0	0	22754000	9006500	13747000	31088000	14004000	17084000	0	0	0	49323	3862	46433	297873;297874	400073;400074	400073			2	
TCLLISYTTNK	1	Unmodified	1312.6697	0.66968766	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.05		2						5	5	2	3	2	5	65.361	56.84	2	1.9979E-11	29691	160513_QHF_FH_JSI12Kac_6	142	124.13			0.88996	0.97732	27.532	12	4	Median	1.2812	1.0982	49.6	2	0	Median	0.93772	1.1099	4.8332	3	1	Plateau	0.79069	0.76591	8.774	2	0	Median	0.88936	0.93947	31.323	5	3	Median	759350000	434310000	325030000	42248000	21812000	20436000	280950000	159420000	121530000	128510000	68773000	59733000	307640000	184310000	123330000	49324	1924	46434	297875;297876;297877;297878;297879;297880;297881;297882;297883;297884;297885;297886	400075;400076;400077;400078;400079;400080;400081;400082;400083;400084;400085;400086;400087	400085			13	
TCLLIVFSK	1	Unmodified	1079.6049	0.60490256	1957;892;2016	P61586;P08134;P62745	RHOA;RHOC;RHOB	Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	82.09	78.853	2	3.7362E-06	70371	160511_QHF_FH_JSI12i_2	133.57	116.33			1.1391	1.2427	24.553	12	0	Median	1.4865	1.2825	15.629	3	0	Median	1.1303	1.3472	12.161	3	0	Plateau	0.85896	0.84439	8.3641	3	0	Median	1.4281	1.5061	18.027	3	0	Median	2540500000	1173200000	1367300000	423400000	174460000	248930000	811750000	385180000	426580000	809710000	417410000	392300000	495610000	196170000	299450000	49325	1957;892;2016	46435	297887;297888;297889;297890;297891;297892;297893;297894;297895;297896;297897;297898	400088;400089;400090;400091;400092;400093;400094;400095;400096;400097;400098;400099;400100;400101;400102;400103;400104;400105;400106;400107;400108	400091			21	
TCLSQLLDIMK	1	Unmodified	1320.6781	0.67814386	1759	P51946	CCNH	Cyclin-H	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.52	100.53	2	0.00077469	87147	160511_QHF_FH_JSI12i_3	80.706	65.091			1.6527	1.7429	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6527	1.7429	NaN	1	1	Median	18373000	7726600	10646000	0	0	0	0	0	0	0	0	0	18373000	7726600	10646000	49326	1759	46436	297899	400109	400109			1	
TCNCETEDYGEK	1	Unmodified	1504.5446	0.54462308	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.666	11.263	2	1.1169E-10	9110	160511_QHF_FH_JSI12i_1	143.97	143.97			0.94285	1.0491	40.208	4	0	Median	0.73711	0.5921	NaN	1	0	Median	0.76065	0.90199	NaN	1	0	Median	1.5408	1.4924	NaN	1	0	Median	1.1687	1.2202	NaN	1	0	Median	237320000	118340000	118980000	39283000	20612000	18672000	61337000	36627000	24710000	60555000	26788000	33767000	76149000	34315000	41835000	49327	2161	46437	297900;297901;297902;297903	400110;400111;400112;400113;400114	400112			5	
TCNLILIVLDVLK	1	Unmodified	1512.8949	0.89493657	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	104.23	104.23	2	0.0001272	93237	160511_QHF_FH_JSI11i_3	86.313	71.622			0.47444	0.45843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47444	0.45843	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4495200	3141700	1353500	0	0	0	0	0	0	4495200	3141700	1353500	0	0	0	49328	5505	46438	297904;297905	400115;400116;400117	400115			3	
TCNLILIVLDVLKPLGHK	2	Unmodified	2045.2071	0.20710301	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.474	91.04	4	6.0028E-12	52004	160513_QHF_FH_JSI9Kac_6	127.22	103.89			1.1535	1.1546	24.466	4	1	Median	1.0726	0.91741	NaN	1	0	Median	1.2406	1.4251	NaN	1	0	Median	0.982	0.94244	NaN	1	1	Median	1.3371	1.4146	NaN	1	0	Median	381490000	187610000	193890000	72351000	33302000	39050000	114540000	56858000	57680000	113810000	62033000	51781000	80792000	35413000	45379000	49329	5505	46439	297906;297907;297908;297909	400118;400119;400120;400121;400122;400123	400119			6	
TCNTMNQFVNK	1	Unmodified	1355.5962	0.59620515	3232	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.286	31.674	2	8.8727E-05	28174	160511_QHF_FH_JSI11i_1	89.08	82.489			0.84955	0.92786	41.078	3	1	Plateau	2.2275	1.8413	NaN	1	1	Median	0.99666	1.1855	NaN	1	0	Median	0.82117	0.8103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	204900000	108390000	96505000	36092000	15099000	20993000	76481000	43904000	32578000	92327000	49392000	42935000	0	0	0	49330	3232	46440	297910;297911;297912;297913	400124;400125;400126;400127;400128;400129;400130	400124			7	
TCPLLLR	0	Unmodified	871.49496	0.49495818	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	44.144	43.444	2	0.0052062	37256	160511_QHF_FH_JSI11i_2	102.98	22.603			1.2265	1.4066	37.423	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77292	0.78137	NaN	1	1	Median	1.3858	1.4841	7.5829	2	0	Median	401040000	188590000	212450000	0	0	0	0	0	0	173150000	98927000	74221000	227890000	89665000	138230000	49331	130	46441	297914;297915;297916;297917	400131;400132;400133;400134;400135	400133			5	
TCTDIKPEWLVK	2	Unmodified	1488.7647	0.76465068	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2	0		4									1	2	1	57.447	56.633	2;3	0.00065073	49995	160511_QHF_FH_JSI10i_2	61.932	41.551			0.74217	0.82108	30.013	4	0	Median	NaN	NaN	NaN	0	0	Median	0.74808	0.89974	NaN	1	0	Median	0.66968	0.6728	15.227	2	0	Median	1.1024	1.2274	NaN	1	0	Median	685640000	422200000	263440000	0	0	0	147020000	83086000	63936000	366870000	240810000	126060000	171750000	98308000	73444000	49332	300	46442	297918;297919;297920;297921	400136;400137	400137			2	
TCTFILR	0	Unmodified	909.47422	0.47422274	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	2	2	2							1	2	2	1	43.649	42.684	2	0.0020061	36537	160511_QHF_FH_JSI11i_2	114.19	88.077			0.81125	0.7979	30.722	6	0	Median	0.82495	0.69259	NaN	1	0	Median	0.92431	1.0686	37.706	2	0	Median	0.76104	0.76122	3.048	2	0	Median	1.1708	1.3222	NaN	1	0	Median	971640000	502820000	468820000	15298000	7977800	7320200	86753000	44807000	41946000	539780000	290410000	249370000	329800000	159620000	170190000	49333	4321	46443	297922;297923;297924;297925;297926;297927	400138;400139;400140;400141;400142;400143	400143			6	
TCTTVAFTQVNSEDK	1	Unmodified	1699.7723	0.77231483	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	5.83	8				3	6				2	6	4	5	47.077	41.602	2;3	7.4279E-66	36395	160511_QHF_FH_JSI9i_1	236.61	212.63			1.1125	1.1982	18.068	16	0	Median	1.2558	1.0393	NaN	1	0	Median	1.0963	1.2892	9.679	6	0	Median	0.88454	0.86832	7.1435	4	0	Median	1.2336	1.32	5.8654	5	0	Median	1828600000	880940000	947650000	190550000	66490000	124060000	481610000	224080000	257530000	650100000	350020000	300080000	506330000	240360000	265980000	49334	2007	46444	297928;297929;297930;297931;297932;297933;297934;297935;297936;297937;297938;297939;297940;297941;297942;297943;297944	400144;400145;400146;400147;400148;400149;400150;400151;400152;400153;400154;400155;400156;400157;400158;400159;400160;400161;400162;400163;400164;400165;400166;400167;400168;400169;400170;400171;400172;400173;400174	400163			31	
TCVHTFFDHQDQVWGVK	1	Unmodified	2102.9632	0.96324392	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			6									2	4	63.47	63.28	3;4	1.8257E-08	54570	160511_QHF_FH_JSI12i_3	128.74	122.3			1.218	1.2751	35.821	6	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91484	0.83785	19.207	2	1	Median	1.5326	1.6275	24.275	4	3	Median	496520000	218420000	278100000	0	0	0	0	0	0	121650000	58399000	63251000	374870000	160020000	214850000	49335	4605	46445	297945;297946;297947;297948;297949;297950	400175;400176;400177;400178;400179	400177			5	
TCVQLWTVGNYHWYLK	1	Unmodified	2067.0037	0.003652175	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	85.231	77.102	3	5.5211E-33	43641	160513_QHF_FH_JSI10Kac_6	164.62	149.2			0.83298	0.81292	25.062	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64977	0.78048	NaN	1	0	Median	0.83298	0.81292	NaN	1	0	Median	1.1583	1.2277	NaN	1	0	Median	366950000	191890000	175060000	0	0	0	143200000	84394000	58803000	93057000	48676000	44381000	130700000	58815000	71880000	49336	648	46446	297951;297952;297953	400180;400181;400182;400183;400184;400185	400184			6	
TCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVR	0	Unmodified	3822.8305	0.83052178	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.614	86.482	4	0.00010195	75018	160511_QHF_FH_JSI12i_3	39.687	35.946			0.9232	0.95874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9232	0.95874	NaN	1	0	Median	37513000	17742000	19771000	0	0	0	0	0	0	0	0	0	37513000	17742000	19771000	49337	1438	46447	297954	400186	400186			1	
TCYPLESRPSLSLGTITDEEMK	1	Unmodified	2526.1982	0.1981904	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		78.417	78.417	3	2.7968E-05	70064	160511_QHF_FH_JSI11i_3	63.184	55.823			1.0091	0.95162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	0.95162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35868000	16040000	19828000	0	0	0	0	0	0	35868000	16040000	19828000	0	0	0	49338	2587	46448	297955	400187;400188	400188			2	
TDAAVSFAK	1	Acetyl (Protein N-term)	950.47091	0.4709115	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	5.06	4	1	1	4	3	1				3	3	4	4	47.096	42.556	2	8.4258E-09	42943	160511_QHF_FH_JSI12i_1	71.379	10.592			0.95355	1.0016	9.3076	10	0	Median	1.1443	0.98746	9.1282	2	0	Median	0.87707	1.0116	1.2772	2	0	Median	0.98213	0.96643	5.4602	2	0	Median	0.94966	0.99229	14.081	4	0	Median	7707300000	3788000000	3919300000	1861500000	802690000	1058800000	1536900000	795720000	741150000	1878100000	1025400000	852710000	2430700000	1164100000	1266600000	49339	826	46449	297956;297957;297958;297959;297960;297961;297962;297963;297964;297965;297966;297967;297968;297969	400189;400190;400191;400192;400193;400194;400195;400196;400197;400198;400199;400200;400201;400202;400203;400204;400205;400206;400207;400208;400209;400210;400211;400212	400194			23	
TDAAVSFAKDFLAGGVAAAISK	2	Acetyl (K);Acetyl (Protein N-term)	2193.1317	0.13174904	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	1	0	1			By MS/MS		16	0									1			1		103.29	93.861	3	0.00036436	53783	160513_QHF_FH_JSI11Kac_6	75.184	62.881			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49340	826	46450	297970	400213	400213	475;478		1	
TDAAVSFAKDFLAGGVAAAISK	2	Acetyl (Protein N-term)	2151.1212	0.12118435	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	0	1	0	1				By MS/MS	3	0			1										1	102.9	102.91	3	3.4591E-10	89673	160511_QHF_FH_JSI12i_3	109.39	102.4			3.4292	3.3252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4292	3.3252	NaN	1	1	Median	44946000	7696600	37249000	0	0	0	0	0	0	0	0	0	44946000	7696600	37249000	49341	826	46450	297971	400214	400214			1	
TDAETLPALK	1	Unmodified	1057.5655	0.56554017	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.463	42.708	2	3.3736E-05	38857	160511_QHF_FH_JSI12i_1	96.034	61.226			0.73534	0.77287	13.662	3	1	Plateau	0.73534	0.59696	NaN	1	0	Median	0.62314	0.73379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74156	0.77287	NaN	1	0	Median	272330000	143940000	128390000	55318000	30111000	25207000	113590000	57563000	56031000	0	0	0	103420000	56262000	47153000	49342	315	46451	297972;297973;297974;297975	400215;400216;400217	400216			3	
TDAGGEDAILQTR	0	Unmodified	1345.6474	0.64737232	4987	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	37.076	36.25	2	1.3716E-10	32661	160511_QHF_FH_JSI11i_1	151.26	130.39			1.0537	0.97831	4.0916	4	2	Median	1.2138	1.0032	4.2042	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94799	0.93551	NaN	1	0	Median	0.93058	0.98287	NaN	1	0	Median	601970000	309940000	292030000	281610000	140990000	140620000	0	0	0	177730000	95916000	81813000	142630000	73033000	69597000	49343	4987	46452	297976;297977;297978;297979	400218;400219;400220;400221;400222	400218			5	
TDAIPGR	0	Unmodified	728.3817	0.38170256	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	4.64	1					3	2			1	1	2	2	17.884	11.554	2	0.0023955	10642	160511_QHF_FH_JSI9i_1	111.28	74.691			1.0855	1.096	4.653	6	0	Median	1.2932	1.0517	NaN	1	0	Median	0.94037	1.0902	NaN	1	0	Median	1.1806	1.15	5.1744	2	0	Median	1.013	1.0759	3.3692	2	0	Median	673660000	308760000	364900000	627250000	286660000	340600000	6855600	3395300	3460300	23275000	11156000	12119000	16281000	7552600	8727900	49344	767	46453	297980;297981;297982;297983;297984;297985	400223;400224;400225;400226;400227;400228;400229	400226			7	
TDAISEEK	1	Unmodified	891.41854	0.41854158	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		10.411	10.091	2	0.005205	7481	160511_QHF_FH_JSI9i_1	66.351	28.218			0.93315	0.97507	13.93	4	1	Median	1.2511	1.0375	NaN	1	0	Median	0.91404	1.0725	NaN	1	0	Median	0.87621	0.85033	10.584	2	1	Median	NaN	NaN	NaN	0	0	Median	687990000	364570000	323420000	200650000	89949000	110700000	157780000	97576000	60208000	329560000	177050000	152510000	0	0	0	49345	4941	46454	297986;297987;297988;297989	400230;400231;400232	400232			3	
TDALQPPHEYVPWVTVNGK	1	Unmodified	2150.0797	0.07965389	1027	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	3	2	2	76.601	75.833	3	6.2353E-18	66622	160511_QHF_FH_JSI11i_2	179.95	170.36			0.92456	0.95833	31.795	8	6	Median	0.97013	0.84246	NaN	1	0	Median	0.73554	0.91067	50.657	3	2	Median	0.94285	0.95833	2.538	2	2	Median	0.92741	1.0431	2.1905	2	2	Median	1086600000	608470000	478110000	105870000	56226000	49643000	275490000	170490000	105000000	388630000	209190000	179450000	316580000	172570000	144020000	49346	1027	46455	297990;297991;297992;297993;297994;297995;297996;297997	400233;400234;400235;400236;400237;400238;400239;400240;400241;400242;400243;400244;400245	400241			13	
TDAPASALWDIMR	0	Unmodified	1445.6973	0.6972994	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.609	92.124	2	7.5862E-05	81086	160511_QHF_FH_JSI9i_2	100.72	66.19			0.74843	0.96976	13.343	4	0	Linear	1.1772	1.037	NaN	1	0	Median	0.90581	1.0948	NaN	1	0	Median	0.79982	0.81456	NaN	1	0	Median	0.8402	0.90685	NaN	1	0	Median	177170000	89198000	87973000	31158000	15564000	15594000	43142000	21498000	21644000	59023000	28431000	30592000	43849000	23705000	20144000	49347	5108	46456	297998;297999;298000;298001	400246;400247;400248;400249;400250;400251;400252;400253	400249			8	
TDAPLNIR	0	Unmodified	898.48723	0.48723027	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.358	32.754	2	0.0022782	29793	160511_QHF_FH_JSI12i_1	81.297	48.826			0.58846	0.59303	3.5022	4	2	Median	0.74057	0.60406	NaN	1	0	Median	0.48175	0.5593	NaN	1	1	Median	0.6263	0.60049	NaN	1	1	Median	0.55291	0.58565	NaN	1	0	Median	3664600000	2166800000	1497800000	853430000	435790000	417640000	1065300000	666990000	398320000	979630000	586320000	393310000	766250000	477690000	288560000	49348	2328	46457	298002;298003;298004;298005	400254;400255;400256;400257	400255			4	
TDAPQPDVK	1	Unmodified	969.47673	0.47672516	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.684	15.622	2	0.023767	12843	160511_QHF_FH_JSI9i_1	49.444	30.713			1.0935	0.89928	NaN	1	1	Median	1.0935	0.89928	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122170000	62916000	59252000	122170000	62916000	59252000	0	0	0	0	0	0	0	0	0	49349	1299	46458	298006	400258	400258			1	
TDAPQPDVKEEEEEK	2	Unmodified	1742.7847	0.78465366	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	22.403	21.872	2;3	3.7173E-07	19213	160511_QHF_FH_JSI12i_1	112.34	101.08			1.6837	1.6386	59.747	8	2	Median	2.1267	1.7228	17.761	2	1	Median	1.7836	2.0543	21.293	2	1	Median	1.6854	1.6373	20.141	2	0	Median	0.5119	0.52094	16.298	2	0	Median	713760000	309840000	403930000	217510000	67571000	149940000	134550000	48787000	85765000	147440000	51029000	96406000	214270000	142450000	71821000	49350	1299	46459	298007;298008;298009;298010;298011;298012;298013;298014	400259;400260;400261;400262;400263;400264;400265;400266;400267;400268;400269;400270;400271	400265			13	
TDAPQPDVKEEEEEKEEEK	3	Unmodified	2258.0074	0.0073959665	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.15	0.361	11	2								2	6	2	3	24.275	23.715	2;3;4	3.116E-18	20694	160511_QHF_FH_JSI11i_1	155.88	141.1			1.3283	1.2887	73.985	12	8	Median	0.46585	0.38016	77.66	2	1	Median	1.5259	1.7406	50.548	5	4	Median	1.3283	1.2887	19.001	2	1	Median	1.1603	1.2346	62.631	3	2	Plateau	5131700000	2701800000	2429900000	1463900000	1039500000	424390000	1178000000	578380000	599660000	1235000000	617380000	617580000	1254800000	466490000	788290000	49351	1299	46460	298015;298016;298017;298018;298019;298020;298021;298022;298023;298024;298025;298026;298027	400272;400273;400274;400275;400276;400277;400278;400279;400280;400281;400282;400283;400284;400285;400286;400287;400288;400289;400290;400291;400292;400293	400273			22	
TDAQAPLPGGPR	0	Unmodified	1178.6044	0.60438529	3985	Q96BI1	SLC22A18	Solute carrier family 22 member 18	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.262	28.699	2	0.00031445	25707	160511_QHF_FH_JSI12i_1	74.424	55.984			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49352	3985	46461	298028	400294	400294			1	
TDASSASSFLDSDELER	0	Unmodified	1828.7963	0.79628098	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	64.225	63.6	2	1.1379E-209	57779	160511_QHF_FH_JSI11i_1	335.69	304.26			1.0325	0.98395	6.3053	4	0	Median	1.1522	0.94222	NaN	1	0	Median	0.80749	0.93613	NaN	1	0	Median	1.0544	1.0275	NaN	1	0	Median	1.011	1.0623	NaN	1	0	Median	1262600000	634990000	627650000	310750000	143170000	167580000	310130000	182760000	127370000	341560000	157100000	184450000	300200000	151950000	148250000	49353	2538	46462	298029;298030;298031;298032	400295;400296;400297;400298;400299;400300;400301;400302;400303;400304;400305	400296			11	
TDASSASSFLDSDELERTGIDLGTTGR	0	Unmodified	2800.2999	0.29988959	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			86.028	85.897	3	2.4303E-07	77975	160511_QHF_FH_JSI10i_1	65.213	51.893			1.5934	1.873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5934	1.873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36181000	12586000	23595000	0	0	0	36181000	12586000	23595000	0	0	0	0	0	0	49354	2538	46463	298033	400306;400307	400306			2	
TDATTAIIK	1	Unmodified	932.51786	0.51786169	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				31.053	29.781	2	0.010603	25978	160511_QHF_FH_JSI9i_1	50.04	18.751			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49355	3290	46464	298034	400308	400308			1	
TDAVEALTALNHYQIR	0	Unmodified	1813.9323	0.93226137	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		6								2	2	2		80.538	79.872	2;3	1.2612E-16	71042	160511_QHF_FH_JSI10i_2	119.76	105.86			1.2527	1.3925	32.08	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9099	1.1098	NaN	1	0	Median	1.7248	1.747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145720000	78101000	67619000	0	0	0	125920000	71817000	54107000	19797000	6284300	13512000	0	0	0	49356	3788	46465	298035;298036;298037;298038;298039;298040	400309;400310;400311;400312;400313;400314	400314			6	
TDAVLPLTVAEVQK	1	Unmodified	1482.8294	0.82935943	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		74.52	74.195	2	0.0031403	66046	160511_QHF_FH_JSI9i_1	57.175	41.909			0.57032	0.54324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57032	0.54324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22133000	11793000	10340000	0	0	0	0	0	0	22133000	11793000	10340000	0	0	0	49357	2404	46466	298041;298042	400315;400316	400316			2	
TDDDCYIDLEAVFNR	0	Unmodified	1844.7887	0.78869318	3622	Q8NCR0	B3GALNT2	UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	59.01	58.485	2	0.0005996	53110	160511_QHF_FH_JSI12i_1	88.496	72.956			1.0441	1.1605	17.199	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0987	1.3106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99214	1.0276	NaN	1	1	Median	325160000	187790000	137370000	0	0	0	131740000	70279000	61459000	0	0	0	193420000	117510000	75911000	49358	3622	46467	298043;298044	400317;400318	400317			2	
TDDEDFVPSDASPPK	1	Unmodified	1618.6999	0.6998614	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.206	45.553	2	0.0023794	41396	160511_QHF_FH_JSI12i_1	58.274	44.504			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49359	999	46468	298045	400319	400319			1	
TDDEVVQREEEAIQLDGLNASQIR	0	Unmodified	2727.3311	0.33113014	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.8	12	4	4							4	5	5	6	78.674	78.091	2;3;4	2.305E-190	69731	160511_QHF_FH_JSI9i_1	259.77	257.36			1.1146	1.0683	9.326	20	1	Median	1.227	1.0389	4.2386	4	1	Linear	0.85129	1.0158	11.825	5	0	Median	1.1202	1.0727	5.814	5	0	Median	1.0704	1.1619	4.6112	6	0	Median	7434600000	3614100000	3820500000	1221700000	556160000	665510000	2296800000	1166800000	1130000000	1743300000	826290000	917050000	2172800000	1064900000	1107900000	49360	1057	46469	298046;298047;298048;298049;298050;298051;298052;298053;298054;298055;298056;298057;298058;298059;298060;298061;298062;298063;298064;298065	400320;400321;400322;400323;400324;400325;400326;400327;400328;400329;400330;400331;400332;400333;400334;400335;400336;400337;400338;400339;400340;400341;400342;400343;400344;400345;400346;400347;400348;400349;400350;400351;400352;400353;400354;400355;400356;400357;400358;400359;400360;400361	400346			42	
TDDIPVWDQEFLK	1	Unmodified	1604.7722	0.77223848	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	88.629	88.152	2	1.147E-13	80003	160511_QHF_FH_JSI10i_1	129.82	103.78			0.56668	0.58294	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56668	0.58294	NaN	1	1	Median	51960000	33872000	18088000	0	0	0	0	0	0	0	0	0	51960000	33872000	18088000	49361	2057	46470	298066;298067;298068	400362;400363;400364	400363			3	
TDDPQLK	1	Unmodified	815.4025	0.40249759	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.783	10.533	2	0.016662	8361	160511_QHF_FH_JSI10i_1	62.717	36.823			1.0184	1.0467	14.341	3	0	Median	NaN	NaN	NaN	0	0	Median	0.773	0.91235	NaN	1	0	Median	1.2681	1.2153	NaN	1	0	Median	1.0184	1.0467	NaN	1	0	Median	513160000	258270000	254890000	0	0	0	172770000	93887000	78880000	151420000	70035000	81380000	188980000	94351000	94632000	49362	1147	46471	298069;298070;298071	400365;400366;400367;400368;400369	400368			5	
TDDRVER	0	Unmodified	889.42536	0.42535829	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	2.9017	2.6469	3	0.0080655	1236	160511_QHF_FH_JSI11i_2	66.073	10.397			1.1152	1.1619	15.643	6	1	Median	1.5198	1.2696	NaN	1	0	Median	0.73538	0.92128	NaN	1	0	Median	1.1766	1.1732	13.897	2	1	Median	1.1152	1.1836	20.426	2	0	Median	1932100000	890180000	1041900000	384590000	162730000	221860000	314800000	172190000	142600000	715320000	293500000	421820000	517350000	261750000	255590000	49363	976	46472	298072;298073;298074;298075;298076;298077	400370;400371;400372;400373;400374;400375;400376	400373			7	
TDDYGRDLSSVQTLLTK	1	Unmodified	1910.9585	0.9585357	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		3										2	1	77.203	76.275	3	0.01898	66929	160511_QHF_FH_JSI11i_2	37.157	20.278			0.85537	0.896	11.517	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95581	0.97202	NaN	1	0	Median	0.76548	0.82593	NaN	1	0	Median	59067000	27636000	31431000	0	0	0	0	0	0	27544000	11144000	16400000	31523000	16493000	15030000	49364	2470	46473	298078;298079;298080	400377;400378;400379	400379			3	
TDDYLDQPCLETVNR	0	Unmodified	1837.8152	0.81524228	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.737	57.247	2	1.7266E-21	52006	160511_QHF_FH_JSI12i_1	177.1	158.36			0.93867	0.91306	25.375	3	0	Median	NaN	NaN	NaN	0	0	Median	0.69315	0.80674	NaN	1	0	Median	0.93867	0.91306	NaN	1	0	Median	1.2746	1.3144	NaN	1	0	Median	108860000	56517000	52344000	0	0	0	39795000	25458000	14337000	34251000	17875000	16376000	34816000	13185000	21631000	49365	1368	46474	298081;298082;298083	400380;400381;400382;400383;400384	400383			5	
TDDYLDQPCYETINR	0	Unmodified	1901.8102	0.8101569	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	1	2	54.454	53.689	2	6.5996E-98	48888	160511_QHF_FH_JSI12i_1	260.22	240.56			1.2936	1.1224	18.217	5	2	Median	1.3509	1.1171	7.5346	2	2	Median	0.97031	1.1224	NaN	1	0	Median	0.84744	0.83042	NaN	1	0	Median	1.3018	1.3669	NaN	1	0	Median	860420000	420020000	440400000	188400000	78939000	109460000	204140000	106140000	98000000	222570000	116750000	105820000	245310000	118190000	127120000	49366	1702	46475	298084;298085;298086;298087;298088;298089	400385;400386;400387;400388;400389;400390;400391;400392	400387			8	
TDEAAFQK	1	Unmodified	908.42396	0.42396131	1278	P26447	S100A4	Protein S100-A4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	16.918	13.947	2	2.0121E-05	11667	160511_QHF_FH_JSI9i_1	139.31	89.724			3.216	2.863	61.418	3	1	Plateau	3.5189	2.863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99	0.97953	NaN	1	1	Median	2.7113	2.8127	NaN	1	0	Median	1164900000	289940000	874960000	658830000	125190000	533640000	0	0	0	13280000	5318300	7961500	492790000	159430000	333370000	49367	1278	46476	298090;298091;298092	400393;400394;400395	400395			3	
TDEAFFDSENDPEK	1	Unmodified	1642.6635	0.66347589	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.277	45.624	2	0.0019146	41400	160511_QHF_FH_JSI12i_1	73.848	59.429			0.93732	0.96443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93732	0.96443	NaN	1	1	Median	34496000	19987000	14509000	0	0	0	0	0	0	0	0	0	34496000	19987000	14509000	49368	4733	46477	298093	400396	400396			1	
TDEFQLHTNVNDGTEFGGSIYQK	1	Unmodified	2599.1827	0.18267499	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.764	7	7	4							3	6	4	5	67.946	67.153	2;3	4.1088E-61	61097	160511_QHF_FH_JSI10i_1	225.39	218.17			0.98748	0.93099	10.108	14	1	Median	1.0122	0.85795	12.234	3	0	Plateau	0.77966	0.91253	3.2666	3	0	Median	1.0536	1.0676	9.4703	4	0	Median	0.92521	0.96916	11.177	4	1	Median	2842800000	1463700000	1379100000	402070000	189660000	212400000	758570000	432660000	325910000	901440000	436960000	464480000	780750000	404410000	376330000	49369	1195	46478	298094;298095;298096;298097;298098;298099;298100;298101;298102;298103;298104;298105;298106;298107;298108;298109;298110;298111	400397;400398;400399;400400;400401;400402;400403;400404;400405;400406;400407;400408;400409;400410;400411;400412;400413;400414;400415;400416;400417;400418;400419;400420;400421;400422;400423;400424;400425;400426;400427;400428;400429;400430;400431;400432;400433;400434;400435;400436;400437;400438;400439;400440;400441;400442;400443;400444;400445	400420			49	
TDEGIAYR	0	Unmodified	923.43486	0.43486035	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	5.97	4	5	1		1	3	4	1		3	7	4	5	20.122	15.67	2	5.5568E-44	10386	160513_QHF_FH_JSI12Kac_3	216.01	113.3			0.98061	1.0133	9.8524	18	3	Median	1.1854	0.99339	16.267	3	1	Plateau	0.83659	1.0136	8.799	6	1	Median	0.98904	0.97965	7.4418	4	0	Median	0.96607	1.0572	9.4514	5	1	Median	15015000000	7123700000	7891100000	3149200000	1176100000	1973100000	4017400000	2128300000	1889100000	3327900000	1540400000	1787600000	4520200000	2278900000	2241400000	49370	1390	46479	298112;298113;298114;298115;298116;298117;298118;298119;298120;298121;298122;298123;298124;298125;298126;298127;298128;298129;298130	400446;400447;400448;400449;400450;400451;400452;400453;400454;400455;400456;400457;400458;400459;400460;400461;400462;400463;400464;400465;400466;400467;400468;400469;400470;400471;400472;400473	400468			28	
TDELGLASSWHWISLK	1	Unmodified	1841.9312	0.93119874	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.19	81.472	3	4.932E-33	45899	160513_QHF_FH_JSI10Kac_6	165.75	149.09			0.84567	0.99704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84567	0.99704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71106000	39147000	31959000	0	0	0	71106000	39147000	31959000	0	0	0	0	0	0	49371	1716	46480	298131	400474;400475	400475			2	
TDELIQK	1	Unmodified	845.44945	0.44944778	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.091	18.61	2	0.011257	16142	160511_QHF_FH_JSI12i_1	71.296	18.659			0.76787	0.79229	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76787	0.79229	NaN	1	0	Median	52339000	23317000	29021000	0	0	0	0	0	0	0	0	0	52339000	23317000	29021000	49372	292	46481	298132	400476	400476			1	
TDELLALGR	0	Unmodified	986.53966	0.53965977	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.765	53.1	2	4.6988E-13	48089	160511_QHF_FH_JSI11i_1	169.26	64.141			0.82109	0.85115	5.0554	4	0	Median	1.0443	0.86105	NaN	1	0	Median	0.7114	0.84137	NaN	1	0	Median	0.87668	0.87034	NaN	1	0	Median	0.76902	0.77816	NaN	1	0	Median	453500000	241880000	211620000	93642000	40386000	53256000	110540000	66915000	43627000	134270000	65821000	68446000	115050000	68758000	46293000	49373	1016	46482	298133;298134;298135;298136	400477;400478;400479;400480;400481;400482;400483	400478			7	
TDEQALLSSILAK	1	Unmodified	1387.7559	0.75586013	3051	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	1	0	3									1		1	1	88.849	88.3	2	0.031978	80435	160511_QHF_FH_JSI11i_1	56.087	48.808			1.0051	0.8985	6.9179	3	0	Median	1.0967	0.8985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0051	0.98001	NaN	1	0	Median	0.83604	0.8548	NaN	1	0	Median	231400000	114620000	116770000	61849000	30965000	30884000	0	0	0	99614000	44352000	55262000	69932000	39306000	30626000	49374	3051	46483	298137;298138;298139	400484	400484			0	
TDESIETK	1	Unmodified	921.42911	0.42910627	5087	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.64	3				1	1				1	1	2	1	13.08	5.7408	2	0.00020762	7592	160511_QHF_FH_JSI12i_1	110.22	76.668			1.0037	0.95532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0037	0.95532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2153500	962500	1191000	0	0	0	0	0	0	2153500	962500	1191000	0	0	0	49375	5087	46484	298140;298141;298142;298143;298144	400485;400486;400487;400488;400489	400486			5	
TDESLDWDSSLVK	1	Unmodified	1493.6886	0.68856843	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				67.443	66.449	2	3.1653E-05	59067	160511_QHF_FH_JSI9i_1	81.525	68.433			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49376	4634	46485	298145	400490	400490			1	
TDESLFPVLK	1	Unmodified	1147.6125	0.61249036	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.573	73.008	2	0.052673	66524	160511_QHF_FH_JSI12i_1	48.048	25.901			2.7026	2.6607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7026	2.6607	NaN	1	0	Median	11258000	3458400	7799300	0	0	0	0	0	0	0	0	0	11258000	3458400	7799300	49377	1311	46486	298146	400491	400491			0	
TDEYLLAR	0	Unmodified	979.49746	0.4974606	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.037	36.424	2	0.0026131	32174	160511_QHF_FH_JSI9i_1	78.77	55.841			1.3494	1.3351	7.7679	4	1	Linear	1.4676	1.1955	NaN	1	0	Median	1.0181	1.1819	NaN	1	1	Median	1.439	1.3982	NaN	1	0	Median	1.2653	1.2867	NaN	1	0	Median	313960000	142300000	171660000	68054000	26708000	41346000	70963000	35342000	35621000	87867000	39693000	48174000	87080000	40561000	46519000	49378	2137	46487	298147;298148;298149;298150	400492;400493;400494;400495;400496;400497;400498	400497			7	
TDFDKNK	2	Acetyl (K)	908.42396	0.42396131	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		22.903	15.427	2	0.02845	9474	160513_QHF_FH_JSI10Kac_3	71.342	31.239			0.73942	0.80254	39.962	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89335	1.0646	NaN	1	0	Median	0.61201	0.60499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22780000	12450000	10330000	0	0	0	8087000	3903400	4183600	14693000	8546100	6146500	0	0	0	49379	1635	46488	298151;298152	400499;400500	400500			2	
TDFEMVHLR	0	Unmodified	1146.5492	0.5491786	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	52.809	51.836	3	0.035471	44481	160511_QHF_FH_JSI12i_2	44.349	44.349			0.86087	0.90613	28.173	4	0	Median	1.6135	1.3962	NaN	1	0	Median	0.60922	0.74361	NaN	1	0	Median	0.76719	0.8087	NaN	1	0	Median	0.96599	1.0153	NaN	1	0	Median	85649000	43280000	42369000	14014000	5180700	8833600	18743000	12553000	6190000	39350000	18715000	20635000	13542000	6830900	6711000	49380	2612	46489	298153;298154;298155;298156	400501	400501			0	
TDFFIGGEEGMAEK	1	Unmodified	1529.6708	0.67080988	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	67.236	66.539	2	3.1351E-40	60742	160511_QHF_FH_JSI12i_1	206.36	161			1.2176	0.99125	24.517	9	3	Linear	1.3029	1.0714	10.474	2	0	Median	0.87924	1.0413	29.056	3	1	Plateau	1.4322	1.4186	37.439	2	1	Median	1.1939	1.257	24.001	2	1	Median	2782000000	1360700000	1421300000	640080000	273290000	366780000	833350000	431660000	401690000	762910000	410720000	352190000	545660000	245010000	300650000	49381	5497	46490	298157;298158;298159;298160;298161;298162;298163;298164;298165	400502;400503;400504;400505;400506;400507;400508;400509;400510;400511;400512;400513;400514;400515;400516;400517;400518;400519;400520;400521	400509			20	
TDFFIGGEEGMAEK	1	Oxidation (M)	1545.6657	0.6657245	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	1	0				By MS/MS	13	0						1							1	66.835	57.611	2	0.043658	29657	160513_QHF_FH_JSI12Kac_3	35.959	29.856			1.0744	1.1831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0744	1.1831	NaN	1	0	Median	2167100	969830	1197300	0	0	0	0	0	0	0	0	0	2167100	969830	1197300	49382	5497	46490	298166	400522	400522			1	
TDFGIFR	0	Unmodified	854.42865	0.42865276	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2	0		3								1	1		1	60.942	59.887	2	0.0075894	53171	160511_QHF_FH_JSI10i_2	86.866	64.244			0.8197	0.93908	6.315	3	0	Median	1.1112	0.93908	NaN	1	0	Median	0.8197	0.9981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78707	0.8797	NaN	1	0	Median	212500000	116020000	96480000	67185000	29171000	38014000	72823000	41949000	30874000	0	0	0	72491000	44898000	27593000	49383	4852	46491	298167;298168;298169	400523;400524	400524			2	
TDFKEEPEPGFK	2	Unmodified	1422.6667	0.66671078	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4	1	5	1				1			2	1	1	4	39.457	37.477	3	1.7757E-05	32916	160511_QHF_FH_JSI10i_2	109.15	96.224			0.9403	0.95011	24.157	8	3	Median	1.0406	0.89246	32.243	2	2	Median	0.67363	0.82142	NaN	1	1	Median	0.83634	0.84913	NaN	1	0	Median	1.0625	1.083	23.918	4	0	Median	804140000	397920000	406210000	221280000	99590000	121690000	138170000	69343000	68831000	179890000	98776000	81118000	264790000	130210000	134580000	49384	1609	46492	298170;298171;298172;298173;298174;298175;298176;298177	400525;400526;400527;400528;400529;400530;400531;400532;400533	400532			9	
TDFQQGCAK	1	Unmodified	1053.4549	0.45494386	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.984	11.854	2	0.00074523	9476	160511_QHF_FH_JSI11i_1	79.713	59.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49385	706	46493	298178	400534	400534			1	
TDFTPHWK	1	Unmodified	1030.4872	0.48723027	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.546	39.448	2;3	0.0020023	34695	160511_QHF_FH_JSI11i_3	58.981	51.335			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49386	3813	46494	298179;298180	400535;400536	400535			2	
TDGAAPNVAPSDVGGGGGR	0	Unmodified	1653.7707	0.77067535	2316	Q12860	CNTN1	Contactin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	30.025	29.107	2	5.1899E-07	25828	160511_QHF_FH_JSI10i_1	89.629	60.903			1.2485	1.123	26.839	2	2	Median	1.136	0.92891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3722	1.3577	NaN	1	1	Median	30123000	12558000	17566000	15083000	7131600	7951700	0	0	0	0	0	0	15040000	5426000	9614200	49387	2316	46495	298181;298182;298183;298184	400537;400538;400539;400540	400538			4	
TDGALLVNAMFFK	1	Unmodified	1425.7326	0.73262227	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.61	1	6	1						4	4	2	3	3	96.821	93.705	2	8.3661E-51	45438	160513_QHF_FH_JSI9Kac_6	211.64	177.26			0.92633	0.95945	14.953	11	4	Median	0.92633	0.77604	5.0851	3	1	Median	0.71855	0.87214	3.4254	2	1	Median	1.0799	1.0622	3.2043	3	0	Plateau	0.89446	0.95945	12.296	3	2	Plateau	1526400000	785240000	741120000	293280000	155380000	137890000	319970000	180020000	139960000	537200000	254390000	282810000	375910000	195450000	180460000	49388	1706	46496	298185;298186;298187;298188;298189;298190;298191;298192;298193;298194;298195;298196	400541;400542;400543;400544;400545;400546;400547;400548;400549;400550;400551;400552;400553;400554;400555;400556	400554			16	
TDGALLVNAMFFKPHWDEK	2	Unmodified	2218.0881	0.088110086	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.35			29						8	3	14	13	7	94.306	92.428	3;4	4.0256E-34	42301	160513_QHF_FH_JSI9Kac_6	168.99	146.98			1.0095	0.93864	13.77	37	7	Plateau	1.0616	0.90899	14.84	3	0	Median	0.78184	0.89439	14.771	14	4	Median	1.0297	0.97615	15.653	13	3	Median	0.9434	0.99863	6.9552	7	0	Median	4701900000	2377400000	2324500000	734910000	391850000	343060000	1509000000	777620000	731340000	1586700000	760030000	826650000	871360000	447940000	423420000	49389	1706	46497	298197;298198;298199;298200;298201;298202;298203;298204;298205;298206;298207;298208;298209;298210;298211;298212;298213;298214;298215;298216;298217;298218;298219;298220;298221;298222;298223;298224;298225;298226;298227;298228;298229;298230;298231;298232;298233	400557;400558;400559;400560;400561;400562;400563;400564;400565;400566;400567;400568;400569;400570;400571;400572;400573;400574;400575;400576;400577;400578;400579;400580;400581;400582;400583;400584;400585;400586;400587;400588;400589;400590;400591;400592;400593;400594;400595;400596;400597;400598;400599;400600;400601;400602;400603;400604;400605;400606;400607;400608;400609;400610;400611;400612;400613;400614;400615;400616;400617;400618;400619;400620;400621;400622;400623;400624;400625;400626;400627;400628	400599			71	
TDGALLVNAMFFKPHWDEK	2	Oxidation (M)	2234.083	0.083024708	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	1	2	2	3	81.387	77.046	3;4	1.3606E-07	39016	160513_QHF_FH_JSI9Kac_6	95.5	80.886			0.92742	1.0098	59.363	7	1	Plateau	0.9959	0.84867	NaN	1	0	Median	0.79362	0.95181	NaN	1	0	Median	1.1446	1.0889	23.343	2	0	Median	0.98092	1.0098	84.839	3	1	Plateau	493710000	227820000	265880000	56263000	29415000	26848000	148720000	86670000	62053000	101480000	47382000	54102000	187240000	64355000	122880000	49390	1706	46497	298234;298235;298236;298237;298238;298239;298240;298241	400629;400630;400631;400632;400633;400634;400635;400636;400637;400638;400639	400632		1386	11	
TDGALLVNAMFFKPHWDEK	2	Acetyl (K)	2260.0987	0.098674772	1706	P50454	SERPINH1	Serpin H1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.956	83.584	3	1.8951E-13	47029	160513_QHF_FH_JSI11Kac_6	129.98	115.94			0.29699	0.28473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29699	0.28473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111050000	85603000	25449000	0	0	0	0	0	0	111050000	85603000	25449000	0	0	0	49391	1706	46497	298242	400640	400640	1718		1	
TDGCHAYLSK	1	Unmodified	1150.5077	0.50770771	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.3		7						1		1	2	3	2	13.099	11.469	2;3	1.1904E-05	9154	160511_QHF_FH_JSI11i_2	103.26	77.518			1.1592	1.1301	22.99	8	3	Median	1.1627	1.0194	NaN	1	1	Median	1.036	1.2644	18.634	2	1	Median	0.94959	0.968	17.535	3	1	Plateau	1.4616	1.5949	4.5085	2	0	Median	835340000	384090000	451250000	18329000	8038500	10291000	205090000	107280000	97812000	373660000	180180000	193480000	238270000	88599000	149670000	49392	2169	46498	298243;298244;298245;298246;298247;298248;298249;298250	400641;400642;400643;400644;400645;400646;400647;400648;400649;400650;400651;400652	400647			12	
TDGDDTETVPSEQSHASGK	1	Unmodified	1959.8294	0.82937202	4352	Q9BQ70	TCF25	Transcription factor 25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	6									3	1	1	1	13.84	13.297	2;3	1.9124E-18	11021	160511_QHF_FH_JSI12i_1	126.07	117.03			0.90391	0.98806	11.587	4	0	Median	1.3302	1.0883	NaN	1	0	Median	0.8697	1.0098	NaN	1	0	Median	0.84534	0.82706	NaN	1	0	Median	0.93946	0.96675	NaN	1	0	Median	366190000	184070000	182120000	108800000	46534000	62266000	70381000	40376000	30004000	84926000	44496000	40430000	102080000	52665000	49420000	49393	4352	46499	298251;298252;298253;298254;298255;298256	400653;400654;400655;400656;400657;400658;400659;400660	400654			8	
TDGDYDYLIK	1	Acetyl (Protein N-term)	1243.5608	0.56084872	106	O00194	RAB27B	Ras-related protein Rab-27B	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	69.49	68.885	2	0.0037372	62764	160511_QHF_FH_JSI12i_1	38.303	34.005			2.1529	2.203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1529	2.203	NaN	1	0	Median	31325000	8036000	23289000	0	0	0	0	0	0	0	0	0	31325000	8036000	23289000	49394	106	46500	298257	400661	400661			1	
TDGEPGPQGWSPR	0	Unmodified	1382.6215	0.62149192	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	34.493	33.769	2	8.4828E-05	30054	160511_QHF_FH_JSI10i_1	97.779	92.138			0.95253	1.0176	3.7942	3	0	Median	1.2152	1.0066	NaN	1	0	Median	0.9142	1.0801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95253	1.0176	NaN	1	0	Median	712380000	348530000	363850000	194400000	85549000	108850000	258390000	130930000	127460000	0	0	0	259600000	132060000	127540000	49395	4760	46501	298258;298259;298260	400662;400663;400664	400663			3	
TDGFAEAIHSPQVAGVPR	0	Unmodified	1850.9275	0.92751034	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	4	1	59.217	58.477	2;3	1.1115E-11	50753	160511_QHF_FH_JSI11i_2	163.34	152.53			0.92479	0.8834	5.5007	5	2	Median	0.95165	0.81869	NaN	1	0	Median	0.70807	0.86027	NaN	1	0	Median	0.93347	0.91748	5.3527	2	2	Median	0.79891	0.88535	NaN	1	0	Median	530780000	269580000	261190000	110520000	49803000	60721000	115680000	61894000	53782000	200760000	107250000	93505000	103820000	50633000	53186000	49396	1016	46502	298261;298262;298263;298264;298265;298266;298267;298268	400665;400666;400667;400668;400669;400670;400671;400672	400669			8	
TDGKVFQFLNAK	2	Acetyl (K)	1408.7351	0.73506511	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.775							6	8	6	5	5	5	5	82.326	72.441	2;3	1.871E-91	38323	160513_QHF_FH_JSI12Kac_6	256.91	193.84			1.0057	1.0072	134.37	19	3	Median	1.1938	1.0084	185.53	4	1	Median	0.83926	0.98113	9.4587	5	0	Median	1.0144	1.0072	233.09	5	2	Median	0.99554	1.0787	8.7829	5	0	Median	2321600000	1156900000	1164700000	357700000	170030000	187680000	653580000	369570000	284010000	830110000	355970000	474140000	480220000	261310000	218910000	49397	2120	46503	298269;298270;298271;298272;298273;298274;298275;298276;298277;298278;298279;298280;298281;298282;298283;298284;298285;298286;298287;298288	400673;400674;400675;400676;400677;400678;400679;400680;400681;400682;400683;400684;400685;400686;400687;400688;400689;400690;400691;400692;400693;400694;400695;400696;400697;400698;400699;400700;400701;400702;400703;400704	400701	2222		32	
TDGLVAVHPK	1	Unmodified	1035.5713	0.57129425	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	3	1	23.351	22.599	2;3	0.00040986	18711	160511_QHF_FH_JSI11i_2	85.676	65.889			0.70284	0.82744	39.832	5	2	Median	1.1448	1.0029	NaN	1	0	Median	0.68096	0.82744	NaN	1	0	Median	0.68091	0.67255	5.0643	2	1	Median	1.6311	1.7549	NaN	1	1	Median	213820000	112740000	101080000	48674000	22188000	26486000	75905000	39287000	36618000	76538000	46168000	30370000	12699000	5095700	7603700	49398	4681	46504	298289;298290;298291;298292;298293;298294;298295;298296	400705;400706;400707;400708;400709;400710	400708			6	
TDGSFLVHHFLSFYLK	1	Unmodified	1909.9727	0.97266962	2289	Q0PNE2	ELP6	Elongator complex protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	90.748	82.45	3;4	1.004E-43	45722	160513_QHF_FH_JSI9Kac_6	177.88	167.68			1.0519	1.0669	53.569	8	0	Median	0.88048	0.7602	19.679	2	0	Median	0.9181	1.0947	34.781	2	0	Median	3.2946	3.0866	72.779	3	0	Plateau	1.0628	1.1228	NaN	1	0	Median	686930000	308200000	378720000	139840000	76413000	63425000	272000000	141150000	130850000	221930000	62403000	159530000	53157000	28235000	24922000	49399	2289	46505	298297;298298;298299;298300;298301;298302;298303;298304	400711;400712;400713;400714;400715;400716;400717;400718;400719;400720;400721	400714			11	
TDGSFVVHDIPSGSYVVEVVSPAYR	0	Unmodified	2679.318	0.31804626	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	91.828	91.25	3	2.5355E-06	78677	160511_QHF_FH_JSI12i_2	57.147	53.552			1.0005	1.0912	11.618	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74949	0.90875	NaN	1	0	Median	1.1279	1.1273	NaN	1	0	Median	1.0005	1.0912	NaN	1	0	Median	147720000	78463000	69256000	0	0	0	43313000	27448000	15865000	66977000	31396000	35581000	37430000	19620000	17810000	49400	4892	46506	298305;298306;298307;298308	400722;400723;400724	400722			3	
TDHFIFTYTR	0	Unmodified	1299.6248	0.62478638	5648	Q9Y546	LRRC42	Leucine-rich repeat-containing protein 42	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	59.435	50.261	2	0.0024877	27672	160513_QHF_FH_JSI10Kac_6	73.985	54.742			1.0482	1.1937	11.959	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92404	1.0969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1891	1.299	NaN	1	0	Median	23575000	13144000	10430000	0	0	0	18051000	9860100	8190800	0	0	0	5523700	3284000	2239700	49401	5648	46507	298309;298310	400725;400726	400726			2	
TDHPEIGEGKPTPALSEEASSSSIR	1	Unmodified	2594.246	0.24600353	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.5		6	5					1		2	3	5	2	44.444	42.85	3;4	1.5899E-24	37655	160511_QHF_FH_JSI10i_2	146.76	144.18			0.99731	0.98547	11.941	11	0	Median	1.1931	1.0099	7.1726	2	0	Median	0.799	0.98547	18.501	3	0	Plateau	1.041	0.99973	7.1823	5	0	Median	0.88653	0.88614	NaN	1	0	Median	1922100000	921950000	1000100000	339580000	145510000	194070000	696840000	360730000	336110000	796150000	380140000	416020000	89496000	35572000	53924000	49402	2780	46508	298311;298312;298313;298314;298315;298316;298317;298318;298319;298320;298321;298322	400727;400728;400729;400730;400731;400732;400733;400734;400735;400736;400737;400738;400739;400740;400741;400742;400743;400744;400745;400746;400747;400748;400749;400750;400751;400752	400749			25	
TDIFGVEETAIGK	1	Unmodified	1378.698	0.6980109	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	74.649	74.157	2	2.2251E-09	67427	160511_QHF_FH_JSI11i_1	107.11	51.547			1.1355	1.1433	9.3269	4	3	Median	1.1963	0.99343	NaN	1	1	Median	1.0589	1.2327	NaN	1	1	Median	1.2309	1.1776	NaN	1	1	Median	1.0777	1.1101	NaN	1	0	Median	228970000	115980000	112990000	44468000	24337000	20131000	50291000	24034000	26257000	62017000	32628000	29390000	72193000	34984000	37209000	49403	2676	46509	298323;298324;298325;298326;298327;298328	400753;400754;400755;400756;400757;400758	400754			6	
TDIQIALPSGCYGR	0	Unmodified	1549.7559	0.75587691	1402	P33316	DUT	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	69.725	69.126	2	3.8042E-52	62591	160511_QHF_FH_JSI10i_1	220.5	207.41			0.92146	1.0671	15.162	5	0	Median	1.5068	1.2332	NaN	1	0	Median	0.86749	1.0365	4.1238	2	0	Median	0.92146	0.89298	NaN	1	0	Median	1.2242	1.2969	NaN	1	0	Median	1399400000	695370000	704060000	90513000	38642000	51871000	824550000	426490000	398070000	275460000	145090000	130370000	208890000	85149000	123740000	49404	1402	46510	298329;298330;298331;298332;298333	400759;400760;400761;400762;400763;400764;400765;400766;400767	400764			9	
TDISLDDPNFWQK	1	Unmodified	1577.7362	0.73618733	5210;4860	Q9HCK8;Q8TD26;Q9P2D1	CHD8;CHD6;CHD7	Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 7	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	81.242	80.905	2	2.8798E-09	73472	160511_QHF_FH_JSI10i_1	104.43	89.755			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49405	4860;5210	46511	298334;298335	400768;400769	400769			2	
TDITYPAGFMDVISIDK	1	Unmodified	1884.9179	0.91791644	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	101.4	101.29	2;3	7.0986E-52	92020	160511_QHF_FH_JSI10i_1	212.17	179.56			0.97356	0.92797	9.2876	8	0	Median	1.0897	0.91349	4.3044	2	0	Median	0.86937	1.0206	19.994	2	0	Median	0.98296	0.95528	6.1814	2	0	Median	0.90177	0.93596	3.3877	2	0	Median	2901900000	1487400000	1414500000	396590000	210320000	186280000	991510000	514990000	476520000	891710000	477410000	414290000	622080000	284650000	337420000	49406	2013	46512	298336;298337;298338;298339;298340;298341;298342;298343;298344	400770;400771;400772;400773;400774;400775;400776;400777;400778;400779;400780;400781	400777			11	
TDITYPAGFMDVISIDK	1	Oxidation (M)	1900.9128	0.91283106	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										3	1	1	91.471	91.078	2	0.0013659	82608	160511_QHF_FH_JSI10i_1	66.267	43.382			0.80571	0.78428	2.0343	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83248	0.79565	NaN	1	1	Median	0.7798	0.77308	NaN	1	1	Median	34127000	24209000	9917400	0	0	0	0	0	0	20590000	15385000	5204900	13536000	8823800	4712400	49407	2013	46512	298345;298346;298347;298348;298349	400782;400783;400784;400785;400786	400784		1669	5	
TDKLDEALEDYK	2	Unmodified	1438.6828	0.68275477	4293	Q99614	TTC1	Tetratricopeptide repeat protein 1	yes	yes	0	0	0	1			By MS/MS		1.5	0.5	1	1										2		49.187	48.717	2;3	0.0038321	44058	160511_QHF_FH_JSI11i_1	55.724	49.426			1.0519	1.0247	30.336	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0519	1.0247	30.336	2	1	Median	NaN	NaN	NaN	0	0	Median	68082000	36266000	31817000	0	0	0	0	0	0	68082000	36266000	31817000	0	0	0	49408	4293	46513	298350;298351	400787;400788;400789	400787			3	
TDKTLVLLMGK	2	Unmodified	1217.7053	0.70534489	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				67.86	59.092	3	0.0097944	31407	160513_QHF_FH_JSI9Kac_6	48.004	31.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49409	876	46514	298352	400790	400790			1	
TDLAAVPASR	0	Unmodified	999.53491	0.53490874	1277	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	34.18	30.052	2	5.4891E-05	26778	160511_QHF_FH_JSI11i_1	92.051	49.942			1.1299	1.2204	11.683	7	1	Median	1.4847	1.2205	NaN	1	0	Median	0.91032	1.0524	18.219	2	0	Median	1.1484	1.1155	12.71	2	0	Median	1.1609	1.2403	1.0547	2	1	Median	572050000	247960000	324090000	80542000	34649000	45894000	146760000	71960000	74800000	143260000	53910000	89353000	201480000	87443000	114040000	49410	1277	46515	298353;298354;298355;298356;298357;298358;298359	400791;400792;400793;400794;400795;400796;400797;400798;400799;400800	400792			10	
TDLADKR	1	Unmodified	817.42938	0.42938104	1175;2861	P20340;Q9NRW1;Q53S08;Q9H0N0	RAB6A;RAB6B;RAB6C	Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-6C	no	no	0	0	0	1			By MS/MS		2	0		1										1		7.1435	6.9472	2	0.017782	4651	160511_QHF_FH_JSI11i_2	67.032	13.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49411	1175;2861	46516	298360	400801	400801			1	
TDLDAMDIK	1	Unmodified	1020.4798	0.47976163	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		48.166	47.751	2	0.050868	43526	160511_QHF_FH_JSI11i_1	55.112	23.808			1.217	1.1894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.217	1.1894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86019000	39156000	46863000	0	0	0	0	0	0	86019000	39156000	46863000	0	0	0	49412	4143	46517	298361	400802	400802			0	
TDLEELNLGPR	0	Unmodified	1255.6408	0.64083038	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		61.642	61.204	2	0.00059565	54390	160511_QHF_FH_JSI9i_1	75.652	43.332			0.82936	0.81363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82936	0.81363	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41962000	24163000	17799000	0	0	0	0	0	0	41962000	24163000	17799000	0	0	0	49413	1796	46518	298362;298363;298364	400803;400804;400805	400804			3	
TDLEELSLGPR	0	Unmodified	1228.6299	0.62993134	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	63.502	62.87	2	4.289E-06	57224	160511_QHF_FH_JSI12i_1	122.94	111.17			0.9686	0.81565	31.222	5	5	Median	0.9686	0.79435	NaN	1	1	Median	0.48273	0.57459	NaN	1	1	Median	0.8338	0.81565	NaN	1	1	Median	1.1614	1.1931	8.1562	2	2	Median	386570000	196470000	190100000	74961000	28108000	46854000	76107000	50988000	25119000	95643000	51704000	43939000	139860000	65672000	74189000	49414	1795	46519	298365;298366;298367;298368;298369	400806;400807;400808;400809;400810	400807			5	
TDLFYER	0	Unmodified	942.4447	0.44469675	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	42.577	41.824	2	0.011609	35810	160511_QHF_FH_JSI11i_2	70.69	49.143			0.90998	1.0003	7.3419	7	1	Median	1.0701	0.90902	NaN	1	0	Median	0.886	1.0656	6.5088	2	1	Median	0.95079	0.95194	7.7499	2	0	Median	0.90376	0.9795	2.9734	2	0	Median	773280000	381760000	391510000	91639000	45542000	46096000	185520000	83684000	101840000	310160000	153410000	156750000	185950000	99124000	86828000	49415	3246	46520	298370;298371;298372;298373;298374;298375;298376	400811;400812;400813;400814;400815;400816	400815			6	
TDLFYERK	1	Unmodified	1070.5397	0.53965977	3246	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		29.759	29.759	3	0.027469	25617	160511_QHF_FH_JSI11i_3	22.58	5.4835			1.8788	1.7573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8788	1.7573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50125000	15082000	35043000	0	0	0	0	0	0	50125000	15082000	35043000	0	0	0	49416	3246	46521	298377	400817	400817			1	
TDLLLDSESQGSGVFLPELDEPEYCNAQNTALWELHALR	0	Unmodified	4430.1013	0.10126013	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		93.513	93.513	4	0.04671	83305	160511_QHF_FH_JSI11i_3	7.5559	3.6716			1.4408	1.3748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4408	1.3748	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29697000	12851000	16846000	0	0	0	0	0	0	29697000	12851000	16846000	0	0	0	49417	3748	46522	298378	400818	400818			1	
TDLLLEPYNK	1	Unmodified	1204.634	0.63395408	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.05	4	3	1			4	4	1		3	4	4	6	66.648	60.945	2	1.0033E-43	54913	160511_QHF_FH_JSI10i_1	242.2	197.12			0.99822	1.0253	41.123	17	4	Median	1.2776	1.0117	27.724	3	2	Plateau	1.0299	1.1973	38.814	4	1	Median	1.0904	1.0662	43.553	4	0	Median	0.86264	0.93228	48.485	6	1	Median	5636300000	2725500000	2910800000	1108900000	503970000	604930000	1439900000	737250000	702620000	1660000000	817790000	842180000	1427500000	666490000	761060000	49418	1436	46523	298379;298380;298381;298382;298383;298384;298385;298386;298387;298388;298389;298390;298391;298392;298393;298394;298395	400819;400820;400821;400822;400823;400824;400825;400826;400827;400828;400829;400830;400831;400832;400833;400834;400835;400836;400837;400838;400839;400840;400841;400842;400843;400844;400845;400846;400847	400832			29	
TDLLLEPYNKYR	1	Acetyl (K)	1565.809	0.80895834	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	3	1	79.77	69.214	2	2.0591E-06	36554	160513_QHF_FH_JSI10Kac_4	111.91	96.016			0.27788	0.32095	121.21	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57735	0.5536	165.54	2	2	Median	0.27788	0.32095	NaN	1	1	Median	17389000	14982000	2407500	0	0	0	3899400	3899400	0	12293000	10007000	2285800	1197500	1075900	121630	49419	1436	46524	298396;298397;298398;298399;298400;298401	400848;400849;400850;400851;400852;400853	400848	1414		6	
TDLLSSLEMILSPTVVSILK	1	Unmodified	2158.2171	0.21705857	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		104.85	104.76	3	0.053515	92451	160511_QHF_FH_JSI11i_2	17.595	7.8068			1.0212	0.99523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0212	0.99523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6997100	3196100	3801100	0	0	0	0	0	0	6997100	3196100	3801100	0	0	0	49420	1779	46525	298402	400854	400854			1	
TDLNPDNLQGGDDLDPNYVLSSR	0	Unmodified	2517.1619	0.16193955	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	81.637	81.168	2;3	0	73958	160511_QHF_FH_JSI11i_1	417.4	398.94			1.0746	1.1344	8.4124	8	0	Median	1.5046	1.2371	0.2063	2	0	Median	1.0535	1.2205	6.2706	2	0	Median	1.0746	1.0532	1.1501	2	0	Median	1.0026	1.0687	4.3675	2	0	Median	2427900000	1155000000	1272900000	421890000	172050000	249840000	666830000	318470000	348360000	642770000	316320000	326450000	696410000	348140000	348280000	49421	1017	46526	298403;298404;298405;298406;298407;298408;298409;298410;298411	400855;400856;400857;400858;400859;400860;400861;400862;400863;400864;400865;400866;400867;400868;400869;400870;400871	400856			17	
TDLPEEKPDATPQNPFLK	2	Unmodified	2039.0211	0.021135958	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	62.991	62.395	3	0.00014907	56815	160511_QHF_FH_JSI12i_1	63.145	53.396			0.99675	0.90834	16.693	5	4	Median	0.99675	0.81746	NaN	1	1	Median	1.0101	1.1761	NaN	1	1	Median	1.0957	1.0323	18.093	2	2	Median	0.88296	0.90011	NaN	1	0	Median	322230000	158820000	163410000	58392000	26384000	32008000	50536000	26031000	24505000	129100000	57178000	71920000	84202000	49229000	34974000	49422	11	46527	298412;298413;298414;298415;298416	400872;400873;400874;400875;400876;400877	400874			6	
TDLSNIPGLLAIDQVLPEESQK	1	Unmodified	2379.2533	0.25332074	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	101.83	101.72	3	1.665E-08	89861	160511_QHF_FH_JSI9i_1	95.51	88.234			0.97522	0.91543	16.369	4	0	Median	0.92634	0.75824	NaN	1	0	Median	0.72043	0.83992	NaN	1	0	Median	1.0267	0.99773	NaN	1	0	Median	1.0648	1.0889	NaN	1	0	Median	645690000	344260000	301430000	72630000	41007000	31623000	239850000	137010000	102840000	146590000	66920000	79670000	186620000	99328000	87293000	49423	2902	46528	298417;298418;298419;298420	400878;400879	400879			2	
TDLSTTVATPSSGLK	1	Unmodified	1476.7672	0.7671531	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.437	48.771	2	0.022029	44334	160511_QHF_FH_JSI12i_1	49.423	39.052			10.233	10.935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.233	10.935	NaN	1	1	Median	22584000	2368200	20215000	0	0	0	0	0	0	0	0	0	22584000	2368200	20215000	49424	2204	46529	298421	400880	400880			1	
TDLVAVWDVALSDGVHK	1	Acetyl (Protein N-term)	1865.9523	0.95232811	5044	Q9NVQ4	FAIM	Fas apoptotic inhibitory molecule 1	yes	yes	0	1	0	0		By MS/MS	By MS/MS		1	0	2										1	1		102.46	102.4	2	1.3595E-18	93182	160511_QHF_FH_JSI10i_1	204.48	166.46			0.6288	0.66441	6.9358	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60097	0.69781	NaN	1	1	Median	0.65791	0.63261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106820000	69522000	37295000	0	0	0	70350000	46378000	23972000	36467000	23144000	13324000	0	0	0	49425	5044	46530	298422;298423	400881;400882	400882			2	
TDLVPAFQNLMK	1	Unmodified	1375.717	0.71697221	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.73	4	6	3							3	3	4	3	92.526	92.018	2;3	1.5427E-07	81043	160511_QHF_FH_JSI9i_2	161.79	140.92			0.91471	0.97163	57.538	11	2	Median	1.0396	0.89003	15.29	3	1	Plateau	0.77744	0.97236	108.6	3	1	Plateau	0.91471	0.89464	8.9871	3	0	Median	0.91369	0.99076	2.9544	2	0	Median	1955800000	1019600000	936220000	379690000	177030000	202670000	612880000	337620000	275260000	541700000	278010000	263700000	421520000	226920000	194600000	49426	1345	46531	298424;298425;298426;298427;298428;298429;298430;298431;298432;298433;298434;298435;298436	400883;400884;400885;400886;400887;400888;400889;400890;400891;400892;400893;400894;400895;400896;400897;400898;400899;400900;400901;400902;400903;400904;400905;400906;400907;400908;400909;400910;400911;400912;400913;400914;400915;400916	400906			34	
TDMAGPK	1	Unmodified	718.33198	0.33197518	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1					1	2	1	9	6.9893	2	0.014342	6181	160511_QHF_FH_JSI12i_1	67.035	50.108			0.75679	0.80365	12.786	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.85219	0.99599	NaN	1	1	Median	0.82445	0.80365	6.3943	2	1	Median	0.70802	0.75204	NaN	1	1	Median	1233600000	702430000	531120000	0	0	0	386130000	214840000	171290000	420970000	245210000	175760000	426460000	242390000	184070000	49427	1092	46532	298437;298438;298439;298440	400917;400918;400919;400920	400918			4	
TDMDNQIVVSDYAQMDR	0	Oxidation (M)	2015.8565	0.85645517	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	55.755	55.098	2	3.5712E-65	50549	160511_QHF_FH_JSI11i_1	225.55	212.35			1.0211	1.0051	11.411	8	0	Median	1.3129	1.0893	3.3274	2	0	Median	0.7695	0.90208	12.751	2	0	Median	1.0211	0.97588	6.7154	2	0	Median	0.94974	0.99672	18.224	2	0	Median	524620000	244550000	280070000	115400000	45355000	70044000	152560000	78715000	73844000	123530000	63387000	60145000	133130000	57094000	76036000	49428	1722	46533	298441;298442;298443;298444;298445;298446;298447;298448;298449	400921;400922;400923;400924;400925;400926;400927;400928;400929;400930;400931;400932;400933;400934;400935;400936;400937;400938	400924		1408;1409	18	
TDMDNQIVVSDYAQMDR	0	Unmodified	1999.8615	0.86154055	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								4	2	1	2	65.114	64.474	2;3	8.2141E-297	57302	160511_QHF_FH_JSI9i_1	372.59	366.62			1.1964	1.1743	18.766	6	1	Median	1.4938	1.2171	17.963	2	0	Median	0.83953	0.97631	27.642	2	1	Median	1.2787	1.2658	NaN	1	0	Median	1.1195	1.1616	NaN	1	0	Median	1992000000	891810000	1100200000	455560000	188290000	267270000	592450000	308870000	283580000	443990000	185460000	258540000	499980000	209190000	290790000	49429	1722	46533	298450;298451;298452;298453;298454;298455;298456;298457;298458	400939;400940;400941;400942;400943;400944;400945;400946;400947;400948;400949;400950;400951;400952;400953;400954;400955;400956;400957;400958;400959;400960;400961	400958			23	
TDMDQIITSK	1	Unmodified	1150.554	0.5539892	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				48.749	47.526	2	1.3735E-06	42418	160511_QHF_FH_JSI9i_1	112.36	89.866			0.56117	0.45356	NaN	1	0	Median	0.56117	0.45356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	266180000	155340000	110840000	266180000	155340000	110840000	0	0	0	0	0	0	0	0	0	49430	4260	46534	298459	400962	400962			1	
TDMELEVLR	0	Unmodified	1104.5485	0.5485099	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	60.682	60.028	2	0.022401	54574	160511_QHF_FH_JSI12i_1	49.715	39.934			0.91656	0.96087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91656	0.96087	NaN	1	1	Median	48715000	24923000	23792000	0	0	0	0	0	0	0	0	0	48715000	24923000	23792000	49431	1022	46535	298460	400963	400963			1	
TDMIQALGGVEGILEHTLFK	1	Unmodified	2171.1296	0.12964055	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	103.56	103.5	3	4.3051E-43	89343	160511_QHF_FH_JSI12i_2	198.24	185.4			1.0826	1.0974	5.4933	6	0	Median	1.32	1.1185	NaN	1	0	Median	0.97286	1.2009	NaN	1	0	Median	1.0826	1.0518	0.27089	2	0	Median	1.0583	1.1186	5.402	2	0	Median	291560000	149340000	142220000	29534000	14605000	14929000	28814000	13829000	14985000	143510000	73557000	69958000	89697000	47349000	42348000	49432	3101	46536	298461;298462;298463;298464;298465;298466	400964;400965;400966;400967;400968;400969;400970;400971;400972;400973;400974	400965			11	
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	1	Unmodified	2980.1953	0.19525838	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	1	3	12.738	12.421	4	1.0071E-11	9712	160511_QHF_FH_JSI12i_1	66.593	66.498			0.85763	0.9162	14.751	5	2	Median	NaN	NaN	NaN	0	0	Median	0.74384	0.87738	NaN	1	0	Median	1.1901	1.1588	NaN	1	1	Median	0.85763	0.9162	15.095	3	1	Median	375170000	203710000	171460000	0	0	0	96202000	58271000	37931000	52615000	26555000	26061000	226360000	118890000	107470000	49433	1063	46537	298467;298468;298469;298470;298471	400975;400976;400977;400978;400979;400980	400976			5	
TDNLPNQAR	0	Unmodified	1027.5047	0.50467125	724	O95758	PTBP3	Polypyrimidine tract-binding protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5	5.66	2					1				1			2	12.067	11.669	2	0.00010103	9578	160511_QHF_FH_JSI12i_1	111.74	52.924			0.96959	1.0167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96959	1.0167	NaN	1	1	Median	137400000	60668000	76736000	0	0	0	0	0	0	0	0	0	137400000	60668000	76736000	49434	724	46538	298472;298473;298474	400981;400982;400983;400984	400982			4	
TDNSSLSSPLNPK	1	Unmodified	1358.6678	0.66777341	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	35.42	34.816	2	2.113E-15	31474	160511_QHF_FH_JSI12i_1	161.99	143.01			0.7374	0.74379	18.509	4	1	Median	0.6687	0.55628	NaN	1	1	Median	0.61411	0.7141	NaN	1	0	Median	0.81316	0.77471	NaN	1	0	Median	0.83042	0.8583	NaN	1	0	Median	347970000	189570000	158390000	79512000	47568000	31944000	87066000	48915000	38151000	107210000	61426000	45788000	74173000	31665000	42508000	49435	5330	46539	298475;298476;298477;298478;298479	400985;400986;400987;400988;400989;400990;400991	400987			7	
TDNTEVLLSADFTGAIK	1	Unmodified	1793.9047	0.90470922	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				83.498	82.891	4	0.056261	73070	160511_QHF_FH_JSI9i_2	16.685	4.0581			1.5519	1.3648	NaN	1	0	Median	1.5519	1.3648	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13021000	5204400	7817000	13021000	5204400	7817000	0	0	0	0	0	0	0	0	0	49436	2902	46540	298480	400992	400992			1	
TDNVEVTDGENK	1	Unmodified	1319.5841	0.58410336	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	15.82	15.352	2	1.3382E-10	12685	160511_QHF_FH_JSI9i_1	141.71	118.97			1.2272	1.2499	11.11	4	1	Median	1.5096	1.2284	NaN	1	0	Median	1.2317	1.4809	NaN	1	0	Median	1.1707	1.1364	NaN	1	0	Median	1.2227	1.2718	NaN	1	1	Median	269800000	126530000	143270000	55657000	25296000	30361000	64781000	29684000	35097000	59490000	29507000	29983000	89870000	42043000	47827000	49437	3849	46541	298481;298482;298483;298484;298485	400993;400994;400995;400996;400997;400998;400999	400999			7	
TDPASNTKLIAMK	2	Acetyl (K);Oxidation (M)	1446.7388	0.73882986	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.617					4	6	1				5	2	4	50.507	41.122	2;3	1.6199E-12	18828	160513_QHF_FH_JSI12Kac_2	128.17	102.23			0.86437	0.98143	13.922	10	0	Median	NaN	NaN	NaN	0	0	Median	0.8089	0.93027	8.1358	5	0	Median	1.152	1.1204	NaN	1	0	Median	1.0242	1.1298	12.977	4	0	Median	140400000	68279000	72124000	0	0	0	47098000	25472000	21626000	22023000	5593700	16429000	71282000	37214000	34068000	49438	2686	46542	298486;298487;298488;298489;298490;298491;298492;298493;298494;298495;298496	401000;401001;401002;401003;401004;401005;401006;401007;401008;401009;401010;401011;401012	401011	2630;2631	2101	13	
TDPASNTKLIAMK	2	Acetyl (K)	1430.7439	0.74391524	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	0						4				1	1	1	1	53.238	41.71	2	3.8684E-05	6833	160513_QHF_FH_JSI9Kac_3	97.734	72.348			1.0971	1.1032	5.5128	4	0	Median	1.2478	1.0183	NaN	1	0	Median	0.8893	1.0724	NaN	1	0	Median	1.1456	1.1348	NaN	1	0	Median	1.0506	1.1472	NaN	1	0	Median	338560000	155700000	182870000	181040000	81087000	99952000	48521000	26707000	21814000	24734000	10634000	14100000	84272000	37271000	47001000	49439	2686	46542	298497;298498;298499;298500	401013;401014;401015	401014	2630;2631		3	
TDPASNTKLIAMKTEK	3	2 Acetyl (K)	1830.9397	0.93971451	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13.1	0.539					1	7	2				4	2	4	74.67	65.738	2;3	1.9983E-22	33030	160513_QHF_FH_JSI12Kac_3	151.44	118.22			1.0275	1.1098	27.78	10	0	Median	NaN	NaN	NaN	0	0	Median	0.78245	0.91804	23.24	4	0	Median	1.6601	1.5875	10.76	2	0	Median	1.0804	1.1797	8.0558	4	0	Median	97614000	52316000	45298000	0	0	0	29258000	17918000	11340000	6597000	2548200	4048700	61759000	31850000	29909000	49440	2686	46543	298501;298502;298503;298504;298505;298506;298507;298508;298509;298510	401016;401017;401018;401019;401020;401021;401022;401023;401024;401025;401026;401027	401020	2630;2631		12	
TDPASNTKLIAMKTEK	3	2 Acetyl (K);Oxidation (M)	1846.9346	0.93462914	2686	Q15596	NCOA2	Nuclear receptor coactivator 2	yes	yes	2	0	1	2		By MS/MS	By MS/MS	By MS/MS	12.4	0.495					4	3					2	1	4	64.329	54.894	3	3.9652E-05	28657	160513_QHF_FH_JSI12Kac_3	89.358	75.94			1.0281	1.1004	181.1	6	1	Median	NaN	NaN	NaN	0	0	Median	0.69002	0.80974	NaN	1	0	Median	1.612	1.5917	NaN	1	0	Median	1.0281	1.1004	221.34	4	1	Median	38701000	19541000	19159000	0	0	0	7345100	4127900	3217200	8493200	3555500	4937700	22863000	11858000	11005000	49441	2686	46543	298511;298512;298513;298514;298515;298516;298517	401028;401029;401030;401031;401032;401033	401030	2630;2631	2101	6	
TDPENTDYTMEHGATR	0	Unmodified	1836.7585	0.75845568	4493	Q9BW85	CCDC94	Coiled-coil domain-containing protein 94	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	24.809	24.253	3	2.1317E-05	21235	160511_QHF_FH_JSI10i_1	80.361	76.327			1.0211	1.0257	5.9455	4	0	Median	1.3027	1.0804	NaN	1	0	Median	0.81639	0.94995	NaN	1	0	Median	1.1051	1.0601	NaN	1	0	Median	0.94344	0.99254	NaN	1	0	Median	185150000	94814000	90340000	45732000	21734000	23998000	48468000	27449000	21019000	48536000	21879000	26658000	42417000	23751000	18666000	49442	4493	46544	298518;298519;298520;298521	401034;401035	401035			2	
TDPGTATNHQGLPAVDSEILEMPPEK	1	Unmodified	2746.312	0.3119746	618	O94888	UBXN7	UBX domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.067	75.572	3	0.00037465	68749	160511_QHF_FH_JSI11i_1	45.126	32.571			1.2461	1.3668	35.336	4	3	Median	2.0242	1.639	NaN	1	1	Median	1.0494	1.1821	NaN	1	0	Median	0.7866	0.76308	NaN	1	1	Median	1.4796	1.5803	NaN	1	1	Median	94461000	49755000	44706000	13467000	4555200	8912100	32545000	16675000	15870000	18273000	14154000	4119700	30175000	14371000	15804000	49443	618	46545	298522;298523;298524;298525;298526	401036;401037;401038;401039;401040;401041	401036			6	
TDPGTVFVMNK	1	Unmodified	1207.5907	0.59070906	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.33	6.13	2						1			1	1	1		58.487	54.277	2	0.011257	48438	160511_QHF_FH_JSI9i_1	82.287	51.55			1.0594	0.8963	10.389	3	0	Plateau	1.1531	0.94986	NaN	1	0	Median	0.72063	0.85999	NaN	1	0	Median	1.0594	1.0585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	331230000	185740000	145500000	139990000	64824000	75169000	186960000	118990000	67968000	4279600	1919800	2359800	0	0	0	49444	5128	46546	298527;298528;298529	401042;401043;401044	401044			2	
TDPIPIVVK	1	Unmodified	980.59063	0.59063271	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	60.639	60.096	2	0.013899	54407	160511_QHF_FH_JSI11i_1	45.972	35.156			1.0375	1.0422	9.6368	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1631	1.1157	NaN	1	0	Median	0.92548	0.97352	NaN	1	0	Median	61459000	34087000	27372000	0	0	0	0	0	0	31662000	17966000	13696000	29798000	16121000	13677000	49445	5368	46547	298530;298531	401045	401045			1	
TDPSILGGMIVR	0	Unmodified	1257.6751	0.67510739	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.42	4	4	3					3		4	5	3	2	77.111	74.182	2	5.585E-08	64980	160511_QHF_FH_JSI12i_2	138.98	127.81			0.91931	1.0256	13.267	14	2	Plateau	1.1621	0.94898	20.009	4	0	Median	0.82528	0.9494	12.53	5	2	Median	0.9844	1.0091	10.411	3	0	Median	0.95887	1.0186	4.4857	2	0	Median	2831200000	1384600000	1446500000	610620000	271930000	338690000	769680000	405600000	364080000	859280000	402970000	456310000	591600000	304140000	287470000	49446	1612	46548	298532;298533;298534;298535;298536;298537;298538;298539;298540;298541;298542;298543;298544;298545	401046;401047;401048;401049;401050;401051;401052;401053;401054;401055;401056;401057;401058;401059;401060;401061;401062;401063;401064;401065;401066;401067;401068;401069;401070;401071	401050			26	
TDPSILGGMIVR	0	Oxidation (M)	1273.67	0.67002202	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		14.8	0.433							1	3		1	1	2		70.2	59.434	2	0.0023541	32655	160513_QHF_FH_JSI11Kac_4	65.347	53.753			1.0586	1.0785	8.6394	4	0	Median	1.3339	1.1015	NaN	1	0	Median	0.88914	1.0561	NaN	1	0	Median	1.0586	1.0528	14.465	2	0	Median	NaN	NaN	NaN	0	0	Median	24515000	11282000	13232000	5259700	1900600	3359100	4528900	2116900	2412000	14726000	7264600	7461300	0	0	0	49447	1612	46548	298546;298547;298548;298549	401072;401073;401074;401075;401076;401077	401074		1289	6	
TDPSTLTEEEVSK	1	Unmodified	1434.6726	0.67258402	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		41.387	41.043	2	0.00055939	37014	160511_QHF_FH_JSI11i_1	88.155	60.142			0.21113	0.20711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21113	0.20711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	246100000	219130000	26965000	0	0	0	0	0	0	246100000	219130000	26965000	0	0	0	49448	3141	46549	298550	401078	401078			1	
TDPSVRPMHER	0	Unmodified	1323.6354	0.63536784	5090	Q9NX40	OCIAD1	OCIA domain-containing protein 1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			12.027	11.335	3	0.0046277	8916	160511_QHF_FH_JSI10i_3	46.706	36.918			0.69376	0.79475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69376	0.79475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46564000	27297000	19266000	0	0	0	46564000	27297000	19266000	0	0	0	0	0	0	49449	5090	46550	298551	401079;401080	401080			2	
TDPTTLTDEEINR	0	Unmodified	1503.7053	0.70528113	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	3	2	2	51.034	45.995	2	1.6081E-22	41513	160511_QHF_FH_JSI10i_1	212.72	192.42			1.0236	1.0966	5.3512	8	0	Median	1.4885	1.2265	NaN	1	0	Median	0.9565	1.1323	4.3177	3	0	Plateau	1.1088	1.0765	5.3776	2	0	Median	1.0236	1.0966	1.1181	2	0	Median	3248300000	1648700000	1599700000	774910000	321470000	453450000	850620000	439600000	411020000	937860000	496930000	440930000	684950000	390680000	294280000	49450	1004	46551	298552;298553;298554;298555;298556;298557;298558;298559	401081;401082;401083;401084;401085;401086;401087;401088;401089;401090;401091;401092;401093;401094;401095;401096;401097	401088			17	
TDPVDIYK	1	Unmodified	949.47566	0.47566253	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	44.767	40.43	2	0.00028345	36337	160511_QHF_FH_JSI11i_1	113.5	88.867			0.96084	0.93779	9.2333	7	0	Median	1.0713	0.879	NaN	1	0	Median	0.78666	0.9315	0.95169	2	0	Median	1.0545	1.0341	14.078	2	0	Median	0.96462	1.0458	1.1665	2	0	Median	2879100000	1442400000	1436700000	590160000	254640000	335520000	733420000	376710000	356710000	756780000	363730000	393050000	798750000	447350000	351400000	49451	1600	46552	298560;298561;298562;298563;298564;298565;298566	401098;401099;401100;401101;401102;401103;401104;401105;401106;401107;401108;401109;401110;401111;401112	401099			15	
TDPVPEEGEDVAATISATETLSEEEQEELRR	0	Unmodified	3429.5907	0.59071146	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1.67	0.471	1	2								1	2			97.163	97.064	3	9.6666E-06	85306	160511_QHF_FH_JSI9i_2	43.068	37.96			1.064	1.2955	22.297	3	1	Median	1.547	1.2998	NaN	1	0	Median	0.92626	1.0689	27.19	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72296000	31789000	40506000	22898000	8647800	14251000	49398000	23142000	26256000	0	0	0	0	0	0	49452	1858	46553	298567;298568;298569	401113;401114;401115	401114			3	
TDQAFVTLTTNDAYAK	1	Acetyl (Protein N-term)	1799.8578	0.85775902	1601	P46976	GYG1	Glycogenin-1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.41	80.941	2	1.0269E-41	73691	160511_QHF_FH_JSI11i_1	110.08	93.824			1.1402	1.1215	50.887	4	1	Median	1.5084	1.2221	NaN	1	0	Median	0.3605	0.41929	NaN	1	1	Median	1.2394	1.166	NaN	1	0	Median	1.049	1.0788	NaN	1	0	Median	209120000	100870000	108260000	48950000	15627000	33324000	41384000	31210000	10174000	66757000	30231000	36526000	52033000	23799000	28234000	49453	1601	46554	298570;298571;298572;298573	401116;401117;401118;401119;401120;401121;401122;401123;401124	401117			9	
TDQAQDVK	1	Unmodified	903.42977	0.42977497	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.24	4		2	2	3	4				3	5	4	3	5.6102	1.422	2	1.2124E-16	1793	160513_QHF_FH_JSI12Kac_2	172.21	129.21			0.99108	0.95015	23.056	13	2	Median	1.0879	0.90072	4.6274	3	0	Median	0.81632	0.98383	38.561	4	2	Median	1.0333	1.0117	17.215	4	0	Median	0.84345	0.90962	26.129	2	0	Median	12515000000	6690100000	5824900000	1684400000	788740000	895630000	3798800000	2316100000	1482800000	3501400000	1685800000	1815600000	3530300000	1899500000	1630900000	49454	1661	46555	298574;298575;298576;298577;298578;298579;298580;298581;298582;298583;298584;298585;298586;298587;298588	401125;401126;401127;401128;401129;401130;401131;401132;401133;401134;401135;401136;401137;401138;401139;401140;401141;401142;401143;401144;401145;401146;401147	401147			23	
TDQAQDVKK	2	Acetyl (K)	1073.5353	0.53530267	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12	0					2						1	1		13.194	5.9458	2	0.0010602	4227	160513_QHF_FH_JSI11Kac_2	109.29	66.207			0.50495	0.53796	80.224	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79471	0.94867	NaN	1	0	Median	0.32084	0.30506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18628000	12522000	6106100	0	0	0	4902200	2835400	2066800	13726000	9686500	4039300	0	0	0	49455	1661	46556	298589;298590	401148;401149	401148	1685		2	
TDQFPLFLIIMGK	1	Unmodified	1521.8265	0.82652266	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		4	4						8	4	4	4	4	100.74	96.488	2;3	2.4851E-32	51428	160513_QHF_FH_JSI9Kac_6	209.85	173.26			0.89045	0.95558	21.615	16	1	Median	1.3283	1.1289	25.975	4	0	Linear	0.81407	0.97164	26.609	4	0	Median	0.93113	0.91591	9.2023	4	1	Median	0.91644	0.96092	20.037	4	0	Median	3463900000	1748400000	1715500000	904920000	416220000	488710000	869850000	456020000	413830000	895980000	467980000	427990000	793170000	408230000	384940000	49456	5442	46557	298591;298592;298593;298594;298595;298596;298597;298598;298599;298600;298601;298602;298603;298604;298605;298606	401150;401151;401152;401153;401154;401155;401156;401157;401158;401159;401160;401161;401162;401163;401164;401165;401166;401167;401168;401169;401170;401171;401172	401165			23	
TDQFPLFLIIMGK	1	Oxidation (M)	1537.8214	0.82143728	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.4	87.991	2	2.3442E-16	47555	160513_QHF_FH_JSI12Kac_6	134.13	113.92			0.86041	0.8766	24.118	4	1	Median	1.4222	1.226	NaN	1	0	Median	0.59769	0.68924	NaN	1	1	Median	0.96296	0.92765	NaN	1	0	Median	0.76877	0.82835	NaN	1	0	Median	379570000	210770000	168800000	69050000	31711000	37340000	60494000	42508000	17986000	105290000	54997000	50292000	144740000	81552000	63187000	49457	5442	46557	298607;298608;298609;298610	401173;401174;401175;401176;401177	401175		2660	5	
TDQVIQSLIALVNDPQPEHPLR	0	Unmodified	2482.318	0.31798668	2071	P68036;A0A1B0GUS4	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	no	0	0	0	0			By MS/MS		16	0									1			1		94.005	84.623	3	8.1148E-09	47781	160513_QHF_FH_JSI11Kac_6	99.11	90.923			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49458	2071	46558	298611	401178	401178			1	
TDQVIQSLIALVNDPQPEHPLRADLAEEYSK	1	Unmodified	3488.7787	0.77872743	2071	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	2	1			93.068	85.256	4	1.319E-91	49821	160513_QHF_FH_JSI10Kac_6	208.86	194.38			1.3063	1.2296	13.625	3	2	Median	1.5034	1.2741	19.049	2	2	Median	1.0321	1.2296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	437410000	210500000	226910000	226690000	90434000	136260000	210720000	120070000	90653000	0	0	0	0	0	0	49459	2071	46559	298612;298613;298614	401179;401180;401181;401182	401182			4	
TDRDKYNR	1	Acetyl (K)	1108.5261	0.52613497	1934	P61077	UBE2D3	Ubiquitin-conjugating enzyme E2 D3	yes	yes	1	0	0	2			By MS/MS	By MS/MS	14.7	0.471							1	2				1	2	6.5452	-2.2599	3	0.013542	2757	160513_QHF_FH_JSI11Kac_5	64.04	47.098			0.75036	0.73808	18.815	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75036	0.7338	NaN	1	0	Median	0.79478	0.86742	22.835	2	0	Median	21815000	11443000	10371000	0	0	0	0	0	0	11553000	5818500	5734600	10262000	5624900	4636700	49460	1934	46560	298615;298616;298617	401183	401183	1941		1	
TDRFVMK	1	Unmodified	895.45857	0.45857268	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	16.223	16.248	3	0.0075176	13426	160511_QHF_FH_JSI11i_3	57.559	33.587			1.1181	1.0839	27.312	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4273	1.3148	NaN	1	0	Median	0.8759	0.89353	NaN	1	0	Median	997550000	435100000	562450000	0	0	0	0	0	0	751260000	288980000	462280000	246290000	146120000	100170000	49461	793	46561	298618;298619	401184	401184			1	
TDRGGDSIGETPTPGASK	1	Unmodified	1744.8228	0.8227705	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	19.637	18.871	3	2.8351E-05	15477	160511_QHF_FH_JSI12i_2	80.545	73.816			0.88675	0.94163	8.1623	4	0	Median	1.0277	0.85899	NaN	1	0	Median	0.8441	1.0319	NaN	1	0	Median	0.92429	0.97984	NaN	1	0	Median	0.85074	0.90491	NaN	1	0	Median	132680000	70115000	62561000	34692000	18325000	16368000	32594000	19044000	13550000	39152000	16468000	22684000	26238000	16279000	9959400	49462	542	46562	298620;298621;298622;298623	401185;401186;401187;401188;401189;401190	401186			6	
TDRTEEWYGTQYK	1	Unmodified	1675.7478	0.74781464	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	32.57	32.477	3	0.011629	27372	160511_QHF_FH_JSI12i_3	40.941	33.902			1.4718	1.468	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4718	1.468	NaN	1	0	Median	53919000	23842000	30077000	0	0	0	0	0	0	0	0	0	53919000	23842000	30077000	49463	1060	46563	298624	401191	401191			1	
TDRYTIHSQLEHLQSK	1	Acetyl (Protein N-term)	1996.9967	0.99665254	4502	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	1	0	1		By MS/MS			3	0			1								1			46.1	44.545	3	1.4624E-07	37176	160511_QHF_FH_JSI10i_3	58.83	34.036			0.83459	1.012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83459	1.012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86291000	47487000	38804000	0	0	0	86291000	47487000	38804000	0	0	0	0	0	0	49464	4502	46564	298625	401192;401193	401193			2	
TDSAATRIPELDFEIPAFSQK	1	Unmodified	2335.1696	0.16959111	498	O75312	ZPR1	Zinc finger protein ZPR1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		97.625	97.625	3	0.00018396	86992	160511_QHF_FH_JSI11i_3	56.529	47.928			1.2748	1.1811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2748	1.1811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13642000	8730700	4910900	0	0	0	0	0	0	13642000	8730700	4910900	0	0	0	49465	498	46565	298626	401194	401194			1	
TDSDEEVAMLLDTVQK	1	Unmodified	1792.8401	0.84006005	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	92.726	92.512	3	0.022856	84187	160511_QHF_FH_JSI12i_1	35.473	26.681			1.5895	1.7212	55.999	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1702	2.5575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1642	1.1584	NaN	1	1	Median	25271000	8844700	16427000	0	0	0	14994000	3850700	11143000	0	0	0	10278000	4994000	5284000	49466	3375	46566	298627;298628	401195;401196	401195			2	
TDSDIIAK	1	Unmodified	861.44436	0.4443624	920	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		19.263	18.637	2	0.00035515	15847	160511_QHF_FH_JSI11i_1	111.01	39.665			1.0687	0.95078	13.727	2	0	Median	1.0618	0.86283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0755	1.0477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1371400000	708960000	662420000	631140000	317060000	314080000	0	0	0	740240000	391890000	348340000	0	0	0	49467	920	46567	298629;298630	401197;401198	401197			2	
TDSDIISK	1	Unmodified	877.43928	0.43927702	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	3	2	2	21.263	17.319	2	0.0049046	10723	160513_QHF_FH_JSI11Kac_3	79.906	61.176			1.0152	1.0402	28.375	8	2	Median	1.2549	1.0203	NaN	1	0	Median	0.92496	1.0605	46.977	3	2	Median	1.1662	1.137	27.392	2	0	Median	0.9689	1.0422	12.162	2	0	Median	1242700000	684410000	558340000	296650000	160190000	136460000	331340000	202350000	128990000	310390000	163710000	146680000	304370000	158160000	146210000	49468	906	46568	298631;298632;298633;298634;298635;298636;298637;298638	401199;401200;401201;401202;401203;401204;401205;401206;401207	401203			9	
TDSEDLQK	1	Unmodified	934.42436	0.42435524	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1						1	2	2	9.6297	7.9565	2	0.0051794	6634	160511_QHF_FH_JSI10i_1	66.429	31.605			0.92223	0.95266	17.648	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0263	1.2296	NaN	1	0	Median	1.014	0.97573	21.639	2	0	Median	0.8581	0.89193	9.3156	2	2	Median	507010000	271040000	235980000	0	0	0	128480000	70881000	57596000	131100000	62663000	68434000	247440000	137490000	109950000	49469	2835	46569	298639;298640;298641;298642;298643	401208;401209;401210;401211;401212	401212			5	
TDSEKPFR	1	Acetyl (K)	1020.4876	0.4876242	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	31.132	22.668	2	0.0082549	13780	160513_QHF_FH_JSI11Kac_3	77.282	64.294			0.81111	0.88674	18.222	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82634	0.98294	NaN	1	0	Median	0.7024	0.68973	NaN	1	0	Median	0.81111	0.88674	NaN	1	0	Median	23920000	14108000	9811500	0	0	0	8316900	4854800	3462000	7861900	4757900	3104000	7741100	4495600	3245500	49470	5542	46570	298644;298645;298646	401213;401214;401215;401216;401217;401218	401214	3481		6	
TDSFVGGR	0	Unmodified	837.39808	0.39808091	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	16.113	15.36	2	0.021568	13102	160511_QHF_FH_JSI12i_1	44.767	22.839			0.71977	0.66357	9.9326	2	0	Median	0.88881	0.71185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58288	0.61856	NaN	1	0	Median	89749000	52113000	37636000	40328000	20214000	20113000	0	0	0	0	0	0	49421000	31898000	17523000	49471	1746	46571	298647;298648	401219	401219			1	
TDSKYFTTNK	2	Acetyl (K);Acetyl (Protein N-term)	1287.5983	0.59829686	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	55.247	45.847	2	0.0022803	18727	160513_QHF_FH_JSI10Kac_1	45.161	32.534			0.73983	0.76593	28.697	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87729	0.96944	NaN	1	0	Median	0.6239	0.60514	NaN	1	0	Median	0.98724	1.0172	NaN	1	0	Median	6354900	3449800	2905100	0	0	0	2450400	1303400	1147000	2709800	1598300	1111400	1194800	548160	646640	49472	2046	46572	298649;298650;298651	401220;401221;401222;401223	401223	2112		4	
TDSKYFTTTK	2	Acetyl (K);Acetyl (Protein N-term)	1274.603	0.60304789	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	1	1	0	1			By MS/MS		11	0				2								2		57.974	48.506	2	0.012536	19184	160513_QHF_FH_JSI11Kac_1	45.161	32.534			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49473	2296	46573	298652;298653	401224;401225	401225	2408		2	
TDSPDMHEDT	0	Unmodified	1146.4135	0.41353256	4489	Q9BW61	DDA1	DET1- and DDB1-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	12.873	12.357	2	5.2829E-05	10117	160511_QHF_FH_JSI10i_1	92.439	92.439			1.012	0.85243	3.0743	3	0	Plateau	1.0251	0.83372	NaN	1	0	Median	0.74997	0.85243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8653	0.88594	NaN	1	0	Median	99879000	54015000	45864000	35104000	23302000	11802000	31349000	15614000	15735000	0	0	0	33426000	15100000	18327000	49474	4489	46574	298654;298655;298656	401226;401227;401228;401229;401230	401228			5	
TDSREDEISPPPPNPVVK	1	Unmodified	1975.9851	0.9850848	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	1	By MS/MS		By MS/MS		1	0	2									1		1		43.585	42.788	3	5.3216E-05	38566	160511_QHF_FH_JSI11i_1	72.819	64.11			1.0382	0.92547	14.066	2	0	Median	1.0356	0.83785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0408	1.0223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	385230000	191440000	193790000	180650000	94181000	86471000	0	0	0	204570000	97260000	107310000	0	0	0	49475	977	46575	298657;298658	401231;401232;401233;401234;401235	401232			5	
TDSSPNQAR	0	Unmodified	974.44174	0.44173664	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	4.66	12	1				3				10	2	2	2	3.6124	1.2026	2	1.2546E-06	2198	160511_QHF_FH_JSI12i_1	133.55	95.31			1.1856	0.97798	15.378	16	0	Median	1.2231	0.97798	7.2006	10	0	Median	0.75995	0.905	40.904	2	0	Median	1.0157	0.99947	30.126	2	0	Median	0.96124	1.0496	16.457	2	0	Median	6357400000	3208900000	3148500000	672840000	316340000	356490000	2052400000	1077300000	975100000	1836000000	873710000	962270000	1796200000	941480000	854680000	49476	1281	46576	298659;298660;298661;298662;298663;298664;298665;298666;298667;298668;298669;298670;298671;298672;298673;298674	401236;401237;401238;401239;401240;401241;401242;401243;401244;401245;401246;401247;401248;401249;401250;401251;401252;401253;401254;401255	401241			20	
TDSVIIADQTPTPTR	0	Unmodified	1613.8261	0.82606496	1119	P17544	ATF7	Cyclic AMP-dependent transcription factor ATF-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.353	45.676	2	1.1028E-10	41051	160511_QHF_FH_JSI10i_1	154.36	130.01			1.1322	0.88223	7.5996	4	0	Linear	1.148	0.9369	NaN	1	0	Median	0.79313	0.94288	NaN	1	0	Median	0.84507	0.83076	NaN	1	0	Median	0.77975	0.81809	NaN	1	0	Median	178070000	96080000	81987000	47975000	23823000	24152000	43429000	24872000	18557000	44390000	24828000	19562000	42273000	22557000	19716000	49477	1119	46577	298675;298676;298677;298678	401256;401257;401258;401259;401260;401261;401262;401263;401264	401261			9	
TDTESELDLISR	0	Unmodified	1377.6624	0.66235368	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	3	1	60.091	56.475	2	5.8223E-93	51095	160511_QHF_FH_JSI11i_1	255.19	240.51			1.0122	1.0289	5.8491	6	0	Median	1.2206	0.99192	NaN	1	0	Median	0.92788	1.0939	9.2909	2	0	Median	1.0604	1.0306	3.2689	2	0	Median	0.98807	1.0335	NaN	1	0	Median	2631200000	1341000000	1290200000	630660000	304790000	325870000	776530000	426720000	349800000	639290000	316480000	322820000	584690000	292970000	291720000	49478	1004	46578	298679;298680;298681;298682;298683;298684;298685	401265;401266;401267;401268;401269;401270;401271;401272;401273;401274;401275;401276	401266			12	
TDTGEPMGR	0	Oxidation (M)	978.40766	0.40765932	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	5.73	7	1			3	4				3	3	5	4	7.6974	3.4288	2	6.9237E-06	7186	160511_QHF_FH_JSI9i_1	118.74	110.06			0.97026	0.98231	12.868	15	0	Median	1.1282	0.92552	22.482	3	0	Median	0.80025	0.95298	4.0399	3	0	Median	1.0092	0.98487	11.163	5	0	Median	0.90225	0.97272	11.759	4	0	Median	5439800000	2781000000	2658700000	1429000000	678890000	750130000	773270000	430520000	342750000	1637300000	789370000	847980000	1600100000	882260000	717870000	49479	880	46579	298686;298687;298688;298689;298690;298691;298692;298693;298694;298695;298696;298697;298698;298699;298700	401277;401278;401279;401280;401281;401282;401283;401284;401285;401286;401287;401288;401289;401290;401291;401292;401293;401294;401295;401296	401291		443	20	
TDTGEPMGR	0	Unmodified	962.41274	0.4127447	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.07	4	4	3			3	1			3	4	4	4	10.73	8.4679	2	2.3953E-11	7497	160511_QHF_FH_JSI12i_1	160.75	143.05			1.0145	1.0384	10.948	15	2	Median	1.1792	1.0202	17.77	3	1	Median	0.78922	0.95224	8.3334	4	0	Median	1.1114	1.1112	7.8072	4	0	Median	1.0009	1.0976	9.9888	4	1	Median	18655000000	9407700000	9247100000	4328200000	1898400000	2429700000	5200500000	2778900000	2421600000	3683700000	1851500000	1832200000	5442400000	2878900000	2563600000	49480	880	46579	298701;298702;298703;298704;298705;298706;298707;298708;298709;298710;298711;298712;298713;298714;298715	401297;401298;401299;401300;401301;401302;401303;401304;401305;401306;401307;401308;401309;401310;401311;401312;401313	401300			17	
TDTGIVTVEQSPSSSK	1	Unmodified	1634.7999	0.79990979	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			35.546	34.754	2	9.111E-05	30540	160511_QHF_FH_JSI9i_1	98.105	80.738			0.59101	0.57097	25.172	2	2	Median	0.58262	0.47788	NaN	1	1	Median	0.59952	0.68221	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46413000	30815000	15597000	22056000	14583000	7472700	24357000	16232000	8124800	0	0	0	0	0	0	49481	3653	46580	298716;298717	401314;401315	401315			2	
TDTLEDLFPTTK	1	Unmodified	1379.682	0.68202649	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.76	11	1	1			2	1			4	5	2	5	78.31	75.667	2;3	7.0796E-110	69989	160511_QHF_FH_JSI12i_1	273.77	250.34			1.0317	1.0392	12.926	12	1	Median	1.3016	1.0722	12.043	2	0	Median	0.94646	1.1303	19.583	4	1	Median	1.0528	1.0063	3.4172	2	0	Median	0.98093	1.0491	11.339	4	0	Median	3662400000	1868100000	1794300000	647280000	316240000	331040000	1118700000	601850000	516870000	1040900000	526620000	514300000	855460000	423400000	432060000	49482	1024	46581	298718;298719;298720;298721;298722;298723;298724;298725;298726;298727;298728;298729;298730;298731;298732;298733	401316;401317;401318;401319;401320;401321;401322;401323;401324;401325;401326;401327;401328;401329;401330;401331;401332;401333;401334;401335;401336;401337;401338;401339;401340;401341;401342;401343;401344;401345;401346;401347	401324			31	
TDTNVLYER	0	Unmodified	1109.5353	0.53530267	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		38.647	29.059	2	0.052286	17692	160513_QHF_FH_JSI11Kac_4	37.549	14.809			1.2587	1.2343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2587	1.2343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1975900	911320	1064600	0	0	0	0	0	0	1975900	911320	1064600	0	0	0	49483	5590	46582	298734	401348	401348			1	
TDTVLILCR	0	Unmodified	1089.5852	0.58522975	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.07	4	4	1			5	4	3		5	5	5	6	59.181	52.572	2	1.4768E-55	30217	160513_QHF_FH_JSI12Kac_4	218.79	158.14			1.0836	1.0496	22.545	21	1	Median	1.3488	1.1505	24.99	5	1	Median	0.87597	1.0327	13.106	5	0	Median	0.86628	0.86205	10.045	5	0	Median	1.2534	1.3436	16.694	6	0	Median	2176300000	1067700000	1108600000	281740000	131880000	149860000	586330000	299830000	286500000	745470000	388790000	356680000	562740000	247160000	315580000	49484	4837	46583	298735;298736;298737;298738;298739;298740;298741;298742;298743;298744;298745;298746;298747;298748;298749;298750;298751;298752;298753;298754;298755	401349;401350;401351;401352;401353;401354;401355;401356;401357;401358;401359;401360;401361;401362;401363;401364;401365;401366;401367;401368;401369;401370;401371;401372;401373;401374;401375;401376;401377	401371			28	
TDTVLILCRK	1	Unmodified	1217.6802	0.68019277	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.68	6.48		4	6					5	7	4	7	6	5	48.093	42.406	2;3	1.2547E-12	22631	160513_QHF_FH_JSI9Kac_6	128.27	106.9			1.0738	1.1568	22.792	22	3	Median	1.5661	1.3804	27.199	4	1	Median	0.97499	1.1907	14.667	7	1	Median	1.0302	0.96775	24.447	6	1	Median	1.2358	1.2372	15.936	5	0	Median	1425800000	699080000	726720000	86104000	34067000	52037000	381490000	208550000	172930000	545180000	268120000	277060000	413020000	188340000	224690000	49485	4837	46584	298756;298757;298758;298759;298760;298761;298762;298763;298764;298765;298766;298767;298768;298769;298770;298771;298772;298773;298774;298775;298776;298777	401378;401379;401380;401381;401382;401383;401384;401385;401386;401387;401388;401389;401390;401391;401392;401393;401394;401395;401396;401397;401398;401399;401400;401401;401402;401403;401404;401405	401395			28	
TDVAVQIISNIYHNFPEQR	0	Unmodified	2243.1335	0.13348037	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				92.152	83.373	3	0.035875	46759	160513_QHF_FH_JSI9Kac_6	33.264	25.691			1.1735	1.0015	NaN	1	1	Median	1.1735	1.0015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99365000	54263000	45102000	99365000	54263000	45102000	0	0	0	0	0	0	0	0	0	49486	408	46585	298778	401406	401406			1	
TDVDVSLPK	1	Unmodified	972.51278	0.51277632	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	49.926	46.309	2	1.6091E-06	41448	160511_QHF_FH_JSI10i_1	131.22	89.72			0.98648	0.99674	11.803	6	0	Median	1.2496	1.0215	NaN	1	0	Median	0.75236	0.88454	13.42	2	0	Median	1.0244	0.98979	13.444	2	0	Median	1.0374	1.0878	NaN	1	0	Median	1387800000	748690000	639160000	310420000	146330000	164100000	386290000	235090000	151210000	388130000	194310000	193820000	303000000	172960000	130030000	49487	2286	46586	298779;298780;298781;298782;298783;298784	401407;401408;401409;401410;401411;401412;401413;401414;401415;401416	401413			10	
TDVSTEHPPFYYNIHR	0	Unmodified	1974.9224	0.92242497	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	50.323	50.205	3;4	0.00029945	44488	160511_QHF_FH_JSI11i_3	69.878	63.308			1.075	1.0592	5.6845	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1656	1.1026	NaN	1	1	Median	0.99139	1.0174	NaN	1	0	Median	145880000	70082000	75802000	0	0	0	0	0	0	80090000	37425000	42665000	65794000	32657000	33138000	49488	3249	46587	298785;298786;298787	401417;401418;401419	401417			3	
TDWDAGFK	1	Unmodified	938.4134	0.41339662	1768	P52298	NCBP2	Nuclear cap-binding protein subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.856	43.192	2	0.0015998	38836	160511_QHF_FH_JSI10i_1	87.323	75.601			0.98394	0.98894	3.5796	4	0	Median	1.1411	0.94087	NaN	1	0	Median	0.86551	1.0083	NaN	1	0	Median	1.0437	1.0162	NaN	1	0	Median	0.9276	0.96997	NaN	1	0	Median	529430000	270000000	259430000	67320000	30995000	36325000	155350000	93674000	61678000	143070000	70347000	72723000	163690000	74987000	88702000	49489	1768	46588	298788;298789;298790;298791	401420;401421;401422;401423;401424;401425;401426;401427	401425			8	
TDWHMAFTGMSR	0	Unmodified	1438.6122	0.61218956	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.49		1	6						5	2	4	3	3	64.836	60.854	2;3	1.741E-05	54001	160511_QHF_FH_JSI11i_3	80.469	75.39			0.98498	0.9909	19.703	12	1	Median	1.607	1.2939	2.9281	2	0	Median	0.78805	0.94381	24.438	4	1	Median	1.0713	1.0467	9.4308	3	0	Median	0.98516	0.99577	12.124	3	0	Plateau	702570000	351070000	351500000	46400000	19741000	26659000	128830000	65588000	63246000	266700000	130270000	136440000	260630000	135480000	125160000	49490	4171	46589	298792;298793;298794;298795;298796;298797;298798;298799;298800;298801;298802;298803	401428;401429;401430;401431;401432;401433;401434;401435;401436;401437;401438;401439;401440;401441	401428			10	
TDWLDGK	1	Unmodified	833.39193	0.3919329	1348;5444	P30405;Q9UNP9	PPIF;PPIE	Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase E	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.626	38.007	2	0.0098703	33613	160511_QHF_FH_JSI9i_1	77.282	37.179			0.80298	0.8995	41.479	4	0	Median	2.1935	1.7624	NaN	1	0	Median	0.88669	1.0489	NaN	1	0	Median	0.72718	0.7018	NaN	1	0	Median	0.71739	0.7714	NaN	1	0	Median	1711100000	846460000	864610000	258150000	87567000	170580000	554180000	295560000	258620000	511430000	265580000	245850000	387320000	197760000	189560000	49491	1348;5444	46590	298804;298805;298806;298807	401442;401443;401444;401445;401446;401447;401448	401447			7	
TDWLDGKHVVFGHVK	2	Acetyl (K)	1778.9104	0.91040372	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	77.35	67.97	3	6.4735E-05	37144	160513_QHF_FH_JSI11Kac_6	91.355	81.825			0.63471	0.62509	17.352	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58112	0.55292	NaN	1	0	Median	0.69324	0.70669	NaN	1	0	Median	71190000	44278000	26913000	0	0	0	0	0	0	51623000	31929000	19694000	19567000	12349000	7218100	49492	1348	46591	298808;298809	401449;401450;401451	401449	1287		3	
TDWTVEDGLQK	1	Unmodified	1290.6092	0.6091959	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	52.409	51.653	2	0.00010188	46997	160511_QHF_FH_JSI12i_1	86.898	60.384			0.71219	0.67876	29.575	3	0	Median	1.3147	1.0616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71219	0.67876	NaN	1	0	Median	0.59204	0.6071	NaN	1	0	Median	97689000	48265000	49423000	24554000	12779000	11776000	0	0	0	39167000	13182000	25985000	33968000	22304000	11663000	49493	3935	46592	298810;298811;298812	401452;401453;401454;401455	401454			3	
TDYIPLLDVDEK	1	Unmodified	1419.7133	0.71332662	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	85.832	85.394	2	1.2554E-05	77588	160511_QHF_FH_JSI10i_1	126.71	104.62			1.2585	1.2929	29.153	5	5	Median	2.7354	2.2366	NaN	1	1	Median	1.1063	1.2929	NaN	1	1	Median	1.5264	1.4705	25.791	2	2	Median	1.0883	1.1062	NaN	1	1	Median	657270000	296970000	360300000	104630000	30850000	73777000	122070000	60038000	62032000	298090000	137830000	160260000	132480000	68253000	64228000	49494	1298	46593	298813;298814;298815;298816;298817	401456;401457;401458;401459;401460;401461;401462;401463;401464;401465	401463			10	
TDYMVGSYGPR	0	Unmodified	1244.5496	0.54957253	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.98	4	4	2				3	2		4	5	3	3	45.958	41.81	2	4.8244E-13	38144	160511_QHF_FH_JSI12i_1	147.2	126.87			0.99186	1.1079	8.0392	15	0	Median	1.4046	1.1452	4.8013	4	0	Median	0.94044	1.1344	6.5776	5	0	Median	1.0317	1.0124	6.6074	3	0	Plateau	0.9405	1.056	3.1599	3	0	Median	5325600000	2650100000	2675500000	810530000	380970000	429560000	1399800000	734350000	665430000	1770900000	865320000	905600000	1344400000	669500000	674880000	49495	1773	46594	298818;298819;298820;298821;298822;298823;298824;298825;298826;298827;298828;298829;298830;298831;298832	401466;401467;401468;401469;401470;401471;401472;401473;401474;401475;401476;401477;401478;401479;401480;401481;401482;401483;401484;401485;401486;401487;401488;401489;401490;401491;401492	401471			27	
TDYMVGSYGPR	0	Oxidation (M)	1260.5445	0.54448715	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.26	3	3					3	1		3	2	2	3	39.048	32.834	2	4.2231E-05	19151	160513_QHF_FH_JSI12Kac_4	98.249	96.271			1.0436	1.1384	11.694	7	1	Median	1.2714	1.0499	11.455	2	1	Median	1.0244	1.2354	5.1516	2	0	Median	0.96755	0.94527	NaN	1	0	Median	1.035	1.1318	10.313	2	0	Median	105660000	51179000	54479000	28089000	11607000	16482000	38043000	21110000	16933000	11627000	5662700	5964000	27900000	12800000	15100000	49496	1773	46594	298833;298834;298835;298836;298837;298838;298839;298840;298841;298842	401493;401494;401495;401496;401497;401498;401499;401500;401501;401502;401503;401504	401503		1462	12	
TDYMVGSYGPRAEEYEFLTPVEEAPK	1	Unmodified	2977.3692	0.36915513	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	86.697	86.13	3	5.0735E-09	74734	160511_QHF_FH_JSI12i_3	67.992	60.799			0.64382	0.70883	71.024	4	4	Median	NaN	NaN	NaN	0	0	Median	0.90197	1.1195	NaN	1	1	Median	0.45955	0.4488	NaN	1	1	Median	0.77534	0.80903	103.83	2	2	Median	73643000	42323000	31320000	0	0	0	10476000	6015000	4461000	10448000	8113200	2334900	52719000	28195000	24524000	49497	1773	46595	298843;298844;298845;298846	401505;401506;401507;401508;401509;401510	401510			6	
TDYNASVSVPDSSGPER	0	Unmodified	1779.7911	0.79113602	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.13	8	4	3		3	4				3	7	7	5	43.987	40.068	2;3	3.2359E-98	36310	160511_QHF_FH_JSI11i_1	264.28	252.06			1.0246	1.017	16.773	19	3	Median	1.1712	0.97018	4.5666	2	0	Median	0.88088	1.0318	22.982	6	2	Median	1.0634	1.042	16.471	6	1	Median	0.96117	1.017	10.572	5	0	Median	9758200000	4815800000	4942500000	1936500000	870270000	1066200000	2471200000	1333700000	1137500000	2651800000	1277700000	1374100000	2698700000	1334100000	1364600000	49498	1975	46596	298847;298848;298849;298850;298851;298852;298853;298854;298855;298856;298857;298858;298859;298860;298861;298862;298863;298864;298865;298866;298867;298868	401511;401512;401513;401514;401515;401516;401517;401518;401519;401520;401521;401522;401523;401524;401525;401526;401527;401528;401529;401530;401531;401532;401533;401534;401535;401536;401537;401538;401539;401540;401541;401542;401543;401544;401545	401513			35	
TDYYARK	1	Unmodified	915.44503	0.4450311	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	1	3	8.4138	8.1489	2;3	0.0040413	5570	160511_QHF_FH_JSI12i_3	58.981	33.244			0.6157	0.75035	31.825	7	0	Median	1.0976	0.95311	NaN	1	0	Median	0.60325	0.74308	4.5973	2	0	Median	0.81631	0.75035	NaN	1	0	Median	0.44067	0.44651	42.441	3	0	Median	2062600000	1276200000	786420000	78155000	36776000	41379000	521230000	271100000	250130000	358390000	219380000	139020000	1104900000	748970000	355890000	49499	1590	46597	298869;298870;298871;298872;298873;298874;298875	401546;401547;401548;401549;401550;401551	401549			6	
TEAADLCK	1	Unmodified	906.41168	0.41168206	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	15.53	12.83	2	0.0016363	11237	160511_QHF_FH_JSI12i_1	86.833	63.309			1.0791	1.0458	19.936	6	0	Median	1.0038	0.83414	NaN	1	0	Median	0.83142	0.96438	NaN	1	0	Median	1.0791	1.0425	11.897	2	0	Median	1.2632	1.3534	2.6396	2	0	Median	602200000	279970000	322240000	115440000	48656000	66783000	150790000	85398000	65387000	190550000	76136000	114410000	145430000	69777000	75654000	49500	1089	46598	298876;298877;298878;298879;298880;298881	401552;401553;401554;401555;401556;401557;401558;401559	401554			8	
TEAAETTPMWQALK	1	Unmodified	1575.7603	0.76029359	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	64.096	63.522	2;3	2.4743E-11	57529	160511_QHF_FH_JSI10i_1	190.56	165.7			0.78065	0.76416	27.524	5	5	Median	1.1772	0.97933	NaN	1	1	Median	0.56045	0.65636	8.773	2	2	Median	0.78065	0.76416	NaN	1	1	Median	1.1595	1.2241	NaN	1	1	Median	283770000	164340000	119430000	44874000	19224000	25650000	86558000	60551000	26006000	90848000	56685000	34164000	61494000	27879000	33614000	49501	3691	46599	298882;298883;298884;298885;298886;298887	401560;401561;401562;401563;401564;401565	401563			6	
TEAASDPQHPAASEGAAAAAASPPLLR	0	Unmodified	2556.2568	0.25684299	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	3	2	1	52.27	51.484	3	6.1007E-62	45419	160511_QHF_FH_JSI10i_2	180.26	167.96			0.98529	1.044	11.946	6	2	Median	1.0934	0.93766	NaN	1	1	Median	0.771	0.93193	22.314	2	1	Median	1.0655	1.044	2.4737	2	0	Median	0.94134	1.0629	NaN	1	0	Median	1513500000	779960000	733550000	108610000	52010000	56596000	649920000	334050000	315880000	662390000	343970000	318420000	92587000	49937000	42650000	49502	4279	46600	298888;298889;298890;298891;298892;298893;298894	401566;401567;401568;401569;401570;401571;401572;401573;401574;401575;401576;401577;401578;401579	401579			14	
TEAASLR	0	Unmodified	746.39227	0.39226725	5568	Q9Y3A4;Q9NSQ0	RRP7A;RRP7BP	Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B	yes	no	0	0	0	0	By MS/MS				2	0		1								1				8.0916	7.6155	2	0.02159	5482	160511_QHF_FH_JSI9i_2	51.456	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49503	5568	46601	298895	401580	401580			1	
TEADAEKTFEEK	2	Acetyl (K)	1438.6464	0.64636926	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1			By MS/MS		12.5	0.5					1	1						2		40.512	31.486	2	6.1489E-05	17995	160513_QHF_FH_JSI11Kac_3	93.258	80.302			0.15726	0.15049	51.077	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15726	0.15049	51.077	2	1	Median	NaN	NaN	NaN	0	0	Median	5355400	4793200	562240	0	0	0	0	0	0	5355400	4793200	562240	0	0	0	49504	1154	46602	298896;298897	401581;401582;401583	401582	1020;1021		3	
TEADVNPK	1	Acetyl (Protein N-term)	914.43453	0.434526	1861	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	4.84	2			3	1					1	1	1	3	21.09	16.318	2	0.00047886	14767	160511_QHF_FH_JSI12i_1	67.032	23.786			0.92839	0.93417	8.083	5	0	Median	1.0901	0.87153	NaN	1	0	Median	0.82014	0.93417	NaN	1	0	Median	1.0627	1.0284	NaN	1	0	Median	0.86838	0.9245	10.897	2	0	Median	485580000	236850000	248730000	245850000	104220000	141630000	3137100	1840800	1296300	8253800	4421700	3832100	228340000	126370000	101970000	49505	1861	46603	298898;298899;298900;298901;298902;298903	401584;401585;401586;401587;401588;401589;401590;401591;401592	401584			8	
TEAEIALK	1	Unmodified	873.48075	0.48074791	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.831	29.235	2	0.0028117	26236	160511_QHF_FH_JSI12i_1	84.568	25.587			0.47772	0.44098	6.01	4	4	Linear	0.57444	0.47692	NaN	1	1	Median	0.42122	0.49697	NaN	1	1	Median	0.51881	0.51294	NaN	1	1	Median	0.43988	0.4463	NaN	1	1	Median	569270000	404790000	164480000	115070000	78023000	37052000	134100000	98346000	35752000	135780000	100300000	35481000	184320000	128130000	56192000	49506	2636	46604	298904;298905;298906;298907	401593;401594;401595;401596	401594			4	
TEAGAVGEAGGAEDPGAAAGGSVR	0	Unmodified	2055.9457	0.94573918	3624	Q8ND04	SMG8	Protein SMG8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	33.999	33.274	2	1.5172E-51	29172	160511_QHF_FH_JSI9i_1	208.43	186.88			1.024	0.97785	6.4938	3	0	Median	1.144	0.97785	NaN	1	0	Median	0.8604	0.97784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.024	1.0942	NaN	1	0	Median	78515000	40392000	38123000	31969000	17226000	14743000	24071000	13827000	10244000	0	0	0	22475000	9338900	13137000	49507	3624	46605	298908;298909;298910	401597;401598;401599;401600;401601;401602;401603	401601			7	
TEALSVIELLLK	1	Unmodified	1327.7963	0.79626839	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	3	2	2	3	100.64	97.216	2	1.0486E-64	88369	160511_QHF_FH_JSI12i_2	228.64	186.76			1.058	1.0448	20.966	10	3	Median	1.11	0.9471	17.052	3	1	Plateau	1.07	1.2771	1.7822	2	1	Median	0.99739	0.98232	14.6	2	1	Median	1.0064	1.0489	18.942	3	0	Median	1311100000	653050000	658040000	213940000	98543000	115390000	300440000	151780000	148660000	449950000	222930000	227020000	346760000	179800000	166970000	49508	2997	46606	298911;298912;298913;298914;298915;298916;298917;298918;298919;298920	401604;401605;401606;401607;401608;401609;401610;401611;401612;401613;401614;401615;401616;401617;401618	401605			15	
TEALTQAFR	0	Unmodified	1035.5349	0.53490874	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.27	2	5					3	2		2	3	4	3	43.437	38.324	2	5.0724E-06	33811	160511_QHF_FH_JSI10i_2	117.04	91.299			1.0184	1.2609	15.766	11	2	Linear	1.3026	1.0929	26.476	2	0	Median	0.89731	1.053	11.023	3	0	Plateau	1.099	1.0655	5.8634	3	2	Plateau	1.2843	1.4129	25.117	3	0	Plateau	1468600000	733960000	734640000	208640000	81372000	127270000	377460000	203960000	173490000	624240000	332050000	292190000	258260000	116580000	141690000	49509	5487	46607	298921;298922;298923;298924;298925;298926;298927;298928;298929;298930;298931;298932	401619;401620;401621;401622;401623;401624;401625;401626;401627;401628;401629;401630;401631;401632;401633	401632			15	
TEALTSAK	1	Unmodified	819.4338	0.43379771	848	P06396;CON__Q3SX14	GSN	Gelsolin	yes	no	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.205	9.8347	2	0.0035931	7720	160511_QHF_FH_JSI12i_1	71.379	6.5762		+	0.84877	0.87632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84877	0.87632	NaN	1	0	Median	73792000	37427000	36364000	0	0	0	0	0	0	0	0	0	73792000	37427000	36364000	49510	848	46608	298933;298934	401634;401635	401634			2	
TEANLEVLK	1	Unmodified	1015.555	0.55497548	3095	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.436	41.708	2	0.00055211	37672	160511_QHF_FH_JSI11i_1	78.556	49.395			0.93917	0.90659	16.613	3	1	Plateau	1.0978	0.90659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82318	0.80521	NaN	1	0	Median	1.0715	1.1179	NaN	1	0	Median	228140000	125380000	102760000	56680000	29144000	27536000	0	0	0	95652000	52475000	43177000	75810000	43764000	32046000	49511	3095	46609	298935;298936;298937;298938	401636;401637;401638;401639;401640	401637			5	
TEAPAAPAAQETK	1	Unmodified	1283.6357	0.635745	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.47	5				4					2	2	3	2	20.349	16.527	2	2.8724E-22	13924	160511_QHF_FH_JSI10i_1	177.44	158.17			0.94767	1.0257	20.465	8	3	Median	1.2542	1.015	NaN	1	0	Median	0.96339	1.1364	13	2	1	Median	0.89795	0.87906	35.106	3	1	Median	0.94767	1.0009	5.5724	2	1	Median	1576500000	836500000	740010000	403470000	201060000	202410000	382900000	193040000	189860000	363620000	198390000	165240000	426510000	244010000	182500000	49512	2101	46610	298939;298940;298941;298942;298943;298944;298945;298946;298947	401641;401642;401643;401644;401645;401646;401647;401648;401649;401650;401651;401652;401653;401654;401655	401649			15	
TEAPESKPGSSSSLSLR	1	Unmodified	1731.8639	0.86390703	2382	Q13286	CLN3	Battenin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		27.461	27.461	3	0.0033986	23609	160511_QHF_FH_JSI11i_3	50.608	39.168			0.75336	0.68592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75336	0.68592	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32502000	17967000	14536000	0	0	0	0	0	0	32502000	17967000	14536000	0	0	0	49513	2382	46611	298948	401656	401656			1	
TEAPLAK	1	Unmodified	728.40685	0.40685468	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	14.819	11.779	2	0.0051095	10436	160511_QHF_FH_JSI12i_1	83.614	18.838			1.0587	1.1827	24.437	5	4	Median	NaN	NaN	NaN	0	0	Median	1.0587	1.256	NaN	1	1	Median	0.95427	0.9442	31.85	2	2	Median	1.0217	1.087	28.395	2	1	Median	1283400000	660090000	623330000	0	0	0	412030000	226310000	185720000	443830000	208020000	235810000	427550000	225760000	201800000	49514	1298	46612	298949;298950;298951;298952;298953;298954;298955	401657;401658;401659;401660;401661;401662;401663;401664	401659			8	
TEAPTWETHGNLMTER	0	Unmodified	1871.8472	0.84721111	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	47.179	46.484	3	6.3762E-06	40891	160511_QHF_FH_JSI10i_2	105.28	97.567			1.0953	1.1468	9.0299	6	0	Median	1.5654	1.3529	NaN	1	0	Median	0.92604	1.112	NaN	1	0	Median	1.26	1.2123	5.0661	2	0	Median	1.0256	1.0897	4.4436	2	0	Median	472770000	216580000	256190000	41603000	15630000	25974000	91969000	47498000	44470000	196520000	79977000	116540000	142670000	73471000	69202000	49515	2925	46613	298956;298957;298958;298959;298960;298961	401665;401666;401667;401668;401669;401670;401671;401672;401673	401671			9	
TEAVASSLYDILAR	0	Unmodified	1507.7882	0.7882229	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	90.578	90.118	2	3.4741E-06	80040	160511_QHF_FH_JSI10i_2	128.28	93.395			0.98382	1.05	8.8078	5	2	Median	1.2242	1.05	NaN	1	0	Median	0.86811	1.0352	16.516	2	1	Median	1.0043	0.98393	NaN	1	1	Median	0.98382	1.0681	NaN	1	0	Median	172580000	81677000	90899000	38838000	14716000	24123000	52224000	26494000	25730000	41998000	19675000	22324000	39515000	20793000	18722000	49516	1094	46614	298962;298963;298964;298965;298966	401674;401675;401676;401677;401678;401679	401679			6	
TECNHYNNIMALYLK	1	Unmodified	1882.8706	0.87058909	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.535	68.236	3	0.021729	58771	160511_QHF_FH_JSI12i_2	30.226	26.055			1.4465	1.5364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4465	1.5364	NaN	1	0	Median	26396000	10456000	15940000	0	0	0	0	0	0	0	0	0	26396000	10456000	15940000	49517	2734	46615	298967	401680;401681	401680			2	
TECYGYALGDATR	0	Unmodified	1475.6351	0.63509307	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.531	41.049	2	2.046E-09	36822	160511_QHF_FH_JSI10i_1	107.85	93.64			1.071	1.0816	20.727	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95163	0.93416	NaN	1	1	Median	1.2053	1.2523	NaN	1	0	Median	181050000	82255000	98795000	0	0	0	0	0	0	91285000	45314000	45971000	89765000	36941000	52824000	49518	1793	46616	298968;298969;298970	401682;401683;401684	401684			3	
TEDALQK	1	Unmodified	803.4025	0.40249759	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	1	0	3									1		1	1	8.9176	8.5123	2	0.013927	6255	160511_QHF_FH_JSI11i_1	67.032	16.066			0.74545	0.81589	7.5062	3	0	Plateau	1.0628	0.88177	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88046	0.86652	NaN	1	0	Median	0.73216	0.76822	NaN	1	0	Median	274010000	130370000	143650000	88096000	38307000	49788000	0	0	0	91798000	40104000	51693000	94120000	51953000	42166000	49519	3003	46617	298971;298972;298973	401685;401686;401687	401685			3	
TEDEVLTSK	1	Unmodified	1020.4975	0.49752018	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	2	1	1	21.176	17.081	2	4.1323E-05	14370	160511_QHF_FH_JSI9i_1	117.89	73.198			1.0983	1.0025	32.174	4	1	Median	1.3545	1.1334	NaN	1	1	Median	1.059	1.2396	47.393	2	0	Median	0.89056	0.86688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	721380000	302500000	418880000	348520000	131920000	216600000	365300000	166640000	198660000	7565300	3938600	3626700	0	0	0	49520	4349	46618	298974;298975;298976;298977;298978	401688;401689;401690;401691	401691			4	
TEDEVLTSKGDAWAK	2	Acetyl (K)	1690.805	0.80499517	4349	Q9BQ61	C19orf43	Uncharacterized protein C19orf43	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						4					2		2	68.092	58.749	2;3	4.0168E-62	30184	160513_QHF_FH_JSI12Kac_3	204.49	193.96			0.95218	1.1143	21.45	4	0	Median	NaN	NaN	NaN	0	0	Median	0.95218	1.1143	3.6651	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86589	0.93821	32.726	2	0	Median	24919000	11942000	12977000	0	0	0	11106000	5716700	5389300	0	0	0	13813000	6225200	7587700	49521	4349	46619	298979;298980;298981;298982	401692;401693;401694;401695;401696	401693	3140		4	
TEDFIIDTLELR	0	Unmodified	1463.7508	0.75077476	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.198	95.927	2	0.00022935	82554	160511_QHF_FH_JSI12i_2	78.655	67.504			0.98276	1.0365	2.0279	4	0	Median	1.144	1.0039	NaN	1	0	Median	0.84216	1.0462	NaN	1	0	Median	1.0338	1.0488	NaN	1	0	Median	0.9342	1.0269	NaN	1	0	Median	62853000	34120000	28733000	13307000	6509400	6797800	10640000	5831000	4809100	19182000	10806000	8376100	19724000	10974000	8750000	49522	2175	46620	298983;298984;298985;298986	401697;401698;401699;401700;401701	401698			5	
TEDGGEFEEGASENNAK	1	Unmodified	1782.718	0.71803066	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	3.46	8				1					2	2	3	2	22.171	20.887	2;3	8.0808E-297	17804	160511_QHF_FH_JSI9i_1	372.71	359.53			1.1763	1.1942	28.479	9	0	Median	1.0658	0.86375	3.5287	2	0	Median	0.67579	0.77679	6.7997	2	0	Median	1.2143	1.1942	20.543	3	0	Plateau	1.2288	1.2674	4.9038	2	0	Median	668270000	318320000	349950000	164050000	65493000	98559000	145300000	80476000	64820000	152430000	78032000	74394000	206490000	94314000	112180000	49523	366	46621	298987;298988;298989;298990;298991;298992;298993;298994;298995	401702;401703;401704;401705;401706;401707;401708;401709;401710;401711	401710			10	
TEDGKVEK	2	Unmodified	904.45018	0.45017606	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.6331	4.319	2	0.016772	2217	160511_QHF_FH_JSI12i_1	88.37	40.521			1.3046	1.2402	33.3	4	0	Median	1.153	0.947	NaN	1	0	Median	1.4761	1.733	NaN	1	0	Median	1.6512	1.6242	NaN	1	0	Median	0.8973	0.94125	NaN	1	0	Median	866110000	376060000	490050000	108410000	50979000	57426000	213640000	89619000	124020000	241970000	90605000	151370000	302090000	144860000	157230000	49524	525	46622	298996;298997;298998;298999	401712;401713;401714	401713			3	
TEDIIIK	1	Unmodified	830.47493	0.47493425	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.998	32.395	2	0.0029888	28837	160511_QHF_FH_JSI11i_1	107.43	20.563			1.351	1.2498	26.093	4	0	Linear	1.1333	0.94766	NaN	1	0	Median	0.74212	0.85365	NaN	1	0	Median	1.4424	1.3982	NaN	1	0	Median	0.71862	0.76928	NaN	1	0	Median	1303600000	631960000	671600000	339520000	144940000	194580000	326030000	155890000	170140000	368140000	187030000	181110000	269860000	144100000	125770000	49525	5215	46623	299000;299001;299002;299003	401715;401716;401717;401718;401719;401720;401721;401722	401715			8	
TEDIITAIR	0	Unmodified	1030.5659	0.56587452	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6	4	4	1			2	5			3	5	5	3	55.752	50.662	2	3.0712E-16	43475	160511_QHF_FH_JSI11i_2	172.21	107.46			0.92526	0.98335	46.84	16	6	Median	1.3654	1.1713	100.01	3	1	Median	0.88264	1.051	7.7819	5	2	Median	0.96999	0.9422	8.3772	5	3	Median	0.86187	0.96497	2.6412	3	0	Median	4644300000	2237900000	2406500000	750810000	206270000	544540000	1221500000	675140000	546370000	1591000000	778220000	812830000	1081000000	578250000	502730000	49526	1395	46624	299004;299005;299006;299007;299008;299009;299010;299011;299012;299013;299014;299015;299016;299017;299018;299019	401723;401724;401725;401726;401727;401728;401729;401730;401731;401732;401733;401734;401735;401736;401737;401738;401739;401740;401741;401742;401743;401744;401745;401746;401747;401748	401742			26	
TEDLEATSEHFK	1	Unmodified	1405.6361	0.63613893	4459	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								2		1	3	31.629	30.45	2;3	2.8249E-14	25642	160511_QHF_FH_JSI12i_2	134.59	106.85			1.0865	1.0553	27.2	4	1	Median	1.5021	1.2923	13.286	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76411	0.84628	15.844	2	1	Median	332620000	157990000	174640000	170520000	67486000	103040000	0	0	0	0	0	0	162100000	90500000	71604000	49527	4459	46625	299020;299021;299022;299023;299024;299025	401749;401750;401751;401752;401753;401754	401751			6	
TEDSLMPEEEFLRR	0	Unmodified	1750.8196	0.81959938	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		4										2	2	64.563	63.646	2;3	0.00010301	55383	160511_QHF_FH_JSI11i_2	73.887	62.273			1.1701	1.2282	11.032	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3545	1.3568	2.8834	2	1	Median	1.0255	1.1238	1.3676	2	0	Median	597000000	281500000	315500000	0	0	0	0	0	0	398040000	176710000	221330000	198960000	104790000	94169000	49528	2676	46626	299026;299027;299028;299029	401755;401756;401757;401758;401759;401760	401758			6	
TEDYLWLK	1	Unmodified	1066.5335	0.53351176	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	63.249	62.556	2	0.0014714	53656	160511_QHF_FH_JSI12i_2	89.046	79.458			0.96888	0.95023	12.448	4	1	Median	NaN	NaN	NaN	0	0	Median	0.70158	0.82074	NaN	1	0	Median	0.98514	0.92588	NaN	1	0	Median	0.97928	1.0396	9.0478	2	1	Median	143460000	76991000	66471000	0	0	0	40546000	22485000	18061000	24076000	11414000	12662000	78840000	43093000	35747000	49529	3503	46627	299030;299031;299032;299033	401761;401762;401763	401762			3	
TEEADLLQTK	1	Unmodified	1146.5768	0.57683314	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	2	2	35.064	34.458	2	7.8186E-07	31106	160511_QHF_FH_JSI12i_1	122.96	100.81			0.75453	0.84246	15.391	4	1	Linear	0.87678	0.72619	NaN	1	0	Median	0.69845	0.83818	NaN	1	0	Median	0.87103	0.84677	NaN	1	0	Median	1.0325	1.0545	NaN	1	1	Median	855140000	468270000	386870000	194490000	97447000	97039000	266660000	166540000	100120000	219020000	113610000	105410000	174980000	90670000	84309000	49530	679	46628	299034;299035;299036;299037;299038;299039	401764;401765;401766;401767;401768;401769;401770;401771;401772	401766			9	
TEEALQLYNQIIK	1	Unmodified	1561.8352	0.83517309	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	81.717	81.195	2	2.203E-22	73931	160511_QHF_FH_JSI12i_1	178.84	133.24			1.1004	1.0516	13.759	6	1	Median	1.2447	1.0338	19.429	2	1	Median	0.90147	1.0848	NaN	1	0	Median	0.95194	0.9375	11.844	2	0	Median	1.168	1.1968	NaN	1	0	Median	402860000	193870000	209000000	79466000	29454000	50011000	126050000	74077000	51969000	128310000	62276000	66039000	69035000	28059000	40976000	49531	602	46629	299040;299041;299042;299043;299044;299045	401773;401774;401775;401776;401777;401778;401779;401780;401781	401775			9	
TEEARPSPAPGPGTPTGTPTR	0	Unmodified	2076.0236	0.023595574	2836	Q4KMP7	TBC1D10B	TBC1 domain family member 10B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		24.09	23.532	3	2.8871E-09	19649	160511_QHF_FH_JSI11i_2	99.86	85.165			0.78837	0.82814	18.184	4	2	Median	1.3401	1.1023	NaN	1	1	Median	0.75911	0.90832	NaN	1	0	Median	0.78837	0.75349	0.29097	2	1	Median	NaN	NaN	NaN	0	0	Median	113030000	70225000	42805000	25916000	11569000	14347000	26205000	16118000	10086000	60909000	42537000	18371000	0	0	0	49532	2836	46630	299046;299047;299048;299049	401782;401783;401784;401785;401786	401784			5	
TEEASSGFLPGDR	0	Unmodified	1364.6208	0.62082322	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.398	37.779	2	1.5724E-30	34289	160511_QHF_FH_JSI12i_1	186.74	168.43			1.0504	1.0472	7.0224	4	0	Median	1.3034	1.0791	NaN	1	0	Median	0.79877	0.93401	NaN	1	0	Median	1.0327	1.0162	NaN	1	0	Median	1.0684	1.087	NaN	1	0	Median	829290000	434050000	395240000	190750000	86614000	104140000	212040000	121980000	90054000	241380000	125950000	115420000	185120000	99496000	85623000	49533	3799	46631	299050;299051;299052;299053	401787;401788;401789;401790;401791;401792;401793	401790			7	
TEEASSGFLPGDRNK	1	Unmodified	1606.7587	0.75871368	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				28.897	27.857	3	0.00074298	24075	160511_QHF_FH_JSI9i_2	70.47	50.044			1.327	1.1566	NaN	1	1	Median	1.327	1.1566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42245000	18551000	23694000	42245000	18551000	23694000	0	0	0	0	0	0	0	0	0	49534	3799	46632	299054	401794	401794			1	
TEEDSEEVREQK	1	Unmodified	1477.6532	0.65324556	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	8.1524	7.803	2;3	3.4775E-22	5686	160511_QHF_FH_JSI12i_1	178.81	151.49			1.5847	1.4547	22.591	8	0	Median	1.7854	1.4515	8.9186	2	0	Median	1.9411	2.2842	5.1072	2	0	Median	1.4874	1.4547	2.7562	2	0	Median	1.2787	1.3593	4.6573	2	0	Median	1889500000	731580000	1157900000	529070000	169790000	359280000	458320000	161500000	296820000	387400000	185850000	201550000	514670000	214440000	300230000	49535	2738	46633	299055;299056;299057;299058;299059;299060;299061;299062	401795;401796;401797;401798;401799;401800;401801;401802;401803;401804;401805;401806	401800			12	
TEEEFKK	2	Unmodified	909.44436	0.4443624	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	2	3	2	8.2118	7.8335	2;3	0.0063375	5807	160511_QHF_FH_JSI10i_2	91.9	33.733			0.93476	1.1165	62.657	8	6	Median	0.33948	0.29857	NaN	1	1	Median	0.93476	1.1165	13.46	2	0	Median	1.3109	1.3701	68.804	3	3	Median	0.81438	0.92764	59.153	2	2	Median	551030000	288660000	262380000	45952000	32991000	12960000	94458000	50131000	44328000	313750000	154940000	158810000	96869000	50592000	46277000	49536	1344	46634	299063;299064;299065;299066;299067;299068;299069;299070	401807;401808;401809;401810;401811;401812;401813	401813			7	
TEEELQAILEAK	1	Unmodified	1372.7086	0.70857559	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		70.887	70.373	2	5.6533E-06	63973	160511_QHF_FH_JSI11i_1	123.01	88.205			1.1994	1.1731	49.67	3	3	Median	3.0708	2.4744	NaN	1	1	Median	0.81315	0.96571	NaN	1	1	Median	1.1994	1.1731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	143220000	68264000	74953000	26491000	8527600	17963000	59508000	32468000	27040000	57218000	27269000	29949000	0	0	0	49537	4914	46635	299071;299072;299073	401814;401815;401816	401814			3	
TEEFEVTK	1	Unmodified	981.46549	0.46549177	3940	Q969H8	MYDGF	Myeloid-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	29.746	25.715	2	2.0046E-06	23001	160511_QHF_FH_JSI12i_1	145.63	113.16			1.0303	1.1164	8.3812	7	0	Median	1.2768	1.0332	NaN	1	0	Median	0.89501	1.0504	16.898	2	0	Median	1.1822	1.1514	3.7273	2	0	Median	1.0241	1.1068	1.2265	2	0	Median	4924000000	2226000000	2698000000	1338800000	478000000	860820000	1189800000	637030000	552790000	1082800000	500750000	582060000	1312500000	610210000	702320000	49538	3940	46636	299074;299075;299076;299077;299078;299079;299080	401817;401818;401819;401820;401821;401822;401823;401824;401825;401826;401827;401828;401829	401821			13	
TEEGEIDYSAEEGENRR	0	Unmodified	1982.8454	0.84535644	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	25.346	24.808	3	6.3295E-06	22016	160511_QHF_FH_JSI12i_1	79.837	75.933			0.73105	0.7476	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73105	0.7476	NaN	1	1	Median	112260000	55679000	56580000	0	0	0	0	0	0	0	0	0	112260000	55679000	56580000	49539	3788	46637	299081	401830	401830			1	
TEEGLGFNIMGGK	1	Unmodified	1351.6442	0.6442012	5010	Q9NUP9	LIN7C	Protein lin-7 homolog C	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	67.867	67.406	2	6.5871E-07	61382	160511_QHF_FH_JSI12i_1	132.32	108.1			0.95171	1.0531	16.674	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78831	0.93598	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.149	1.1849	NaN	1	0	Median	113540000	58223000	55322000	0	0	0	59429000	32502000	26927000	0	0	0	54115000	25721000	28394000	49540	5010	46638	299082;299083	401831;401832;401833;401834	401832			3	
TEEGLGPNIK	1	Unmodified	1056.5451	0.54513908	3708	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.069	27.709	2	0.0017054	24441	160511_QHF_FH_JSI11i_1	64.268	56.343			1.1027	1.0687	16.243	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.86105	1.0113	NaN	1	1	Median	1.1027	1.0687	NaN	1	0	Median	0.75648	0.78787	NaN	1	1	Median	153380000	73186000	80191000	0	0	0	47053000	23785000	23268000	60175000	26410000	33765000	46150000	22992000	23158000	49541	3708	46639	299084;299085;299086	401835;401836;401837	401835			3	
TEEGNNKPQK	2	Unmodified	1143.552	0.55201537	2549	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	yes	yes	0	0	0	1	By MS/MS			By matching	2	0		2								1			1	4.5403	4.0578	3	0.0058268	2020	160511_QHF_FH_JSI9i_2	43.512	28.31			1.2276	1.1951	53.752	2	0	Median	1.9758	1.7477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76272	0.81722	NaN	1	0	Median	72696000	36993000	35703000	30600000	12203000	18397000	0	0	0	0	0	0	42096000	24790000	17306000	49542	2549	46640	299087;299088	401838	401838			1	
TEEGPTLSYGR	0	Unmodified	1208.5673	0.56733108	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.02	3	1				3	3			1	3	3	3	35.088	29.253	2	7.6326E-13	26397	160511_QHF_FH_JSI12i_1	142.43	107.13			0.84927	0.88912	7.4424	10	1	Median	0.95916	0.77692	NaN	1	0	Median	0.73536	0.89698	3.9535	3	1	Plateau	0.98575	0.95042	9.7108	3	0	Median	0.8599	0.91601	2.0222	3	0	Plateau	1717700000	826320000	891410000	410680000	195090000	215590000	27835000	15867000	11968000	581580000	262200000	319370000	697640000	353150000	344480000	49543	1556	46641	299089;299090;299091;299092;299093;299094;299095;299096;299097;299098	401839;401840;401841;401842;401843;401844;401845;401846;401847;401848	401840			10	
TEEIAEEEETVFPK	1	Unmodified	1649.7672	0.76721268	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	59.094	58.444	2	2.6679E-98	53143	160511_QHF_FH_JSI12i_1	261.75	215.29			0.92663	0.83912	19.774	5	1	Median	0.92663	0.7575	NaN	1	0	Median	0.71303	0.83912	NaN	1	0	Median	0.92833	0.90248	NaN	1	0	Median	0.7957	0.81658	37.493	2	1	Median	650380000	352460000	297920000	171730000	92339000	79390000	108440000	60275000	48170000	145230000	77446000	67787000	224980000	122400000	102570000	49544	4940	46642	299099;299100;299101;299102;299103	401849;401850;401851;401852;401853;401854;401855;401856;401857;401858	401852			10	
TEEIAQER	0	Unmodified	974.46689	0.46688876	4659	Q9H1H9;Q9NQT8	KIF13A;KIF13B	Kinesin-like protein KIF13A;Kinesin-like protein KIF13B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	9.587	9.3425	2	0.0069632	7251	160511_QHF_FH_JSI11i_1	60.972	16.855			1.0529	1.0104	16.947	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1144	1.3259	NaN	1	0	Median	1.0529	1.0104	NaN	1	0	Median	0.90781	0.9713	NaN	1	0	Median	515410000	284250000	231160000	0	0	0	76583000	39691000	36892000	73067000	41264000	31803000	365760000	203300000	162460000	49545	4659	46643	299104;299105;299106	401859;401860;401861;401862	401860			4	
TEELEEESFPER	0	Unmodified	1493.6522	0.65218292	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	45.212	41.642	2	1.0486E-64	37113	160511_QHF_FH_JSI10i_1	228.64	225.53			1.0162	1.0805	4.3085	6	0	Median	1.3393	1.1104	NaN	1	0	Median	0.92131	1.0963	0.4242	2	0	Median	1.0461	1.0185	4.3481	2	0	Median	1.0188	1.0682	NaN	1	0	Median	1066300000	544540000	521750000	166830000	82691000	84142000	296990000	157170000	139820000	298980000	156040000	142950000	303480000	148640000	154840000	49546	5542	46644	299107;299108;299109;299110;299111;299112;299113	401863;401864;401865;401866;401867;401868;401869;401870;401871;401872;401873;401874;401875;401876	401869			14	
TEELEGQIK	1	Unmodified	1045.5292	0.52915466	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				24.529	23.303	2	0.011813	19973	160511_QHF_FH_JSI9i_1	57.96	25.147			1.16	0.979	NaN	1	1	Median	1.16	0.979	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30621000	13053000	17568000	30621000	13053000	17568000	0	0	0	0	0	0	0	0	0	49547	2627	46645	299114	401877	401877			1	
TEELIESPK	1	Unmodified	1044.5339	0.53390569	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		29.291	29.072	2	0.005133	25858	160511_QHF_FH_JSI11i_1	64.711	51.723			0.47722	0.45575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47722	0.45575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32559000	21795000	10764000	0	0	0	0	0	0	32559000	21795000	10764000	0	0	0	49548	4290	46646	299115	401878	401878			1	
TEELKPQVEEK	2	Unmodified	1328.6824	0.68236084	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								2	2	3	4	19.298	18.748	2;3	0.00025971	16395	160511_QHF_FH_JSI12i_1	59.227	35.551			0.95332	0.97576	26.579	10	3	Median	1.1834	1.0079	8.4963	2	0	Median	0.70391	0.82882	26.993	2	1	Median	1.0687	1.0488	40.59	3	2	Median	1.0449	1.1274	28.337	3	0	Plateau	1118700000	565260000	553460000	115250000	60353000	54900000	305820000	169150000	136660000	382610000	186310000	196310000	315040000	149450000	165590000	49549	5433	46647	299116;299117;299118;299119;299120;299121;299122;299123;299124;299125;299126	401879;401880;401881;401882;401883;401884;401885;401886;401887;401888;401889;401890;401891;401892;401893;401894	401886			16	
TEELNREVATNSELVQSGK	1	Unmodified	2103.0444	0.044390595	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			2	2	2	4	42.07	40.367	3	4.6684E-54	34527	160511_QHF_FH_JSI11i_2	214.19	186.7		+	1.1231	1.1472	19.087	10	0	Median	0.96177	0.79758	4.5725	2	0	Median	0.77995	0.92736	5.2813	2	0	Median	1.1634	1.1472	0.32945	2	0	Median	1.1557	1.2494	2.3599	4	0	Median	1905100000	938770000	966370000	306880000	161280000	145610000	473040000	273250000	199790000	522850000	240610000	282240000	602380000	263640000	338740000	49550	65	46648	299127;299128;299129;299130;299131;299132;299133;299134;299135;299136	401895;401896;401897;401898;401899;401900;401901;401902;401903;401904;401905;401906;401907;401908;401909;401910;401911;401912;401913;401914;401915	401910			21	
TEEMPNDSVLENK	1	Unmodified	1504.6715	0.67153816	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.595	40.95	2	2.287E-22	36758	160511_QHF_FH_JSI10i_1	178.67	121.07			1.0779	1.0874	5.1951	4	0	Median	1.2411	1.0371	NaN	1	0	Median	0.98712	1.1657	NaN	1	0	Median	1.0718	1.0617	NaN	1	0	Median	1.0841	1.1136	NaN	1	0	Median	613360000	306660000	306700000	145290000	74481000	70811000	144650000	68221000	76424000	135050000	68911000	66137000	188370000	95044000	93330000	49551	1649	46649	299137;299138;299139;299140	401916;401917;401918;401919;401920;401921;401922;401923	401921			8	
TEEQIAAEEAWNETEK	1	Unmodified	1876.8327	0.83266649	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.269	51.603	2	3.5296E-05	46903	160511_QHF_FH_JSI12i_1	110.38	99.167			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8981800	0	8981800	0	0	0	0	0	0	0	0	0	8981800	0	8981800	49552	3858	46650	299141	401924	401924			1	
TEESPASDEAGEK	1	Unmodified	1348.563	0.56303357	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.33	5				3					2	2	3	1	10.129	8.3836	2	3.5371E-41	7055	160511_QHF_FH_JSI12i_1	207.29	196.77			2.1381	2.1175	29.008	5	2	Median	1.6571	1.3582	NaN	1	1	Median	2.5085	2.9076	NaN	1	0	Median	2.2306	2.194	5.0198	2	1	Median	1.6245	1.696	NaN	1	0	Median	484300000	176050000	308240000	123390000	47231000	76156000	86638000	31840000	54798000	119790000	33107000	86682000	154480000	63877000	90606000	49553	825	46651	299142;299143;299144;299145;299146;299147;299148;299149	401925;401926;401927;401928;401929;401930;401931;401932;401933;401934;401935	401929			11	
TEESSDVPRELIESIK	1	Acetyl (Protein N-term)	1872.9317	0.93165225	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	1	0	1				By MS/MS	1	0	1												1	84.593	84.092	2	0.0011253	76667	160511_QHF_FH_JSI12i_1	32.498	22.811			1.3865	1.4486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3865	1.4486	NaN	1	0	Median	20186000	8147600	12039000	0	0	0	0	0	0	0	0	0	20186000	8147600	12039000	49554	3003	46652	299150	401936	401936			1	
TEETVLPAEVKTDGTK	2	Acetyl (K)	1758.8887	0.8887248	5835				yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.6	0.484					3	5					5	3		36.901	28.131	3	0.017229	15347	160513_QHF_FH_JSI10Kac_3	35.303	18.618	+		0.73181	0.87076	18.409	8	0	Median	NaN	NaN	NaN	0	0	Median	0.71751	0.86999	3.5518	5	0	Median	1.2653	1.2366	12.201	3	0	Plateau	NaN	NaN	NaN	0	0	Median	254610000	141710000	112900000	0	0	0	192470000	110990000	81478000	62141000	30719000	31422000	0	0	0	49555	5835	46653	299151;299152;299153;299154;299155;299156;299157;299158	401937;401938	401937	3575		2	
TEEVSNLK	1	Unmodified	918.46583	0.46582612	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.541	14.1	2	0.0017591	11535	160511_QHF_FH_JSI11i_1	85.212	45.109			0.83129	0.92794	12.72	4	0	Median	1.2832	1.0625	NaN	1	0	Median	0.83516	0.99413	NaN	1	0	Median	0.82744	0.80354	NaN	1	0	Median	0.82531	0.86616	NaN	1	0	Median	979680000	552700000	426980000	159790000	76631000	83159000	297310000	193430000	103880000	291580000	153030000	138540000	231000000	129610000	101390000	49556	3132	46654	299159;299160;299161;299162	401939;401940;401941;401942;401943	401940			5	
TEEYDTQAMK	1	Unmodified	1214.5125	0.51251832	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.775	18.155	2	0.0021567	15729	160511_QHF_FH_JSI12i_1	61.56	45.898			0.73991	0.69531	34.793	3	2	Median	0.73991	0.6317	NaN	1	1	Median	1.0171	1.2038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67807	0.69531	NaN	1	0	Median	105160000	52051000	53111000	28255000	13647000	14608000	45711000	21215000	24496000	0	0	0	31196000	17189000	14007000	49557	4153	46655	299163;299164;299165	401944;401945;401946	401944			3	
TEFLGFFYK	1	Unmodified	1150.5699	0.56989727	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	86.336	77.211	2	7.5193E-05	42537	160513_QHF_FH_JSI9Kac_6	116.73	96.396			1.1551	1.1905	6.0014	3	0	Median	1.3994	1.2117	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1551	1.0837	NaN	1	0	Median	1.1137	1.1905	NaN	1	0	Median	139320000	59549000	79774000	47665000	19098000	28567000	0	0	0	63240000	31192000	32048000	28419000	9260000	19159000	49558	3059	46656	299166;299167;299168	401947;401948;401949	401949			3	
TEFLSFMNTELAAFTK	1	Unmodified	1848.8968	0.89678707	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	6	8	8						8	6	8	8	8	100.64	98.256	2;3	0	87887	160511_QHF_FH_JSI12i_2	402.3	382.54			0.92161	0.94903	17.727	29	5	Median	1.0432	0.86236	13.395	6	0	Median	0.79545	0.92265	12.999	8	1	Median	0.99686	1.0199	19.227	8	2	Median	0.97634	1.0478	17.499	7	2	Median	46426000000	23939000000	22487000000	7065200000	3482400000	3582800000	10488000000	5845700000	4642500000	15130000000	7601100000	7528900000	13743000000	7009800000	6732700000	49559	1387	46657	299169;299170;299171;299172;299173;299174;299175;299176;299177;299178;299179;299180;299181;299182;299183;299184;299185;299186;299187;299188;299189;299190;299191;299192;299193;299194;299195;299196;299197;299198	401950;401951;401952;401953;401954;401955;401956;401957;401958;401959;401960;401961;401962;401963;401964;401965;401966;401967;401968;401969;401970;401971;401972;401973;401974;401975;401976;401977;401978;401979;401980;401981;401982;401983;401984;401985;401986;401987;401988;401989;401990;401991;401992;401993;401994;401995;401996;401997;401998;401999	401955			50	
TEFLSFMNTELAAFTK	1	Oxidation (M)	1864.8917	0.89170169	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.81		8	1						6	3	1	5	6	95.608	91.661	2;3	1.2674E-120	44824	160513_QHF_FH_JSI9Kac_6	265.12	233.84			0.90997	0.92081	25.629	12	9	Median	1.0435	0.87607	21.924	3	2	Median	0.78788	0.99122	NaN	1	1	Median	0.85228	0.83343	5.6965	3	2	Median	0.94977	1.0665	32.991	5	4	Median	625020000	310750000	314270000	207950000	92365000	115580000	40746000	20672000	20074000	125780000	65794000	59985000	250550000	131920000	118630000	49560	1387	46657	299199;299200;299201;299202;299203;299204;299205;299206;299207;299208;299209;299210;299211;299212;299213	402000;402001;402002;402003;402004;402005;402006;402007;402008;402009;402010;402011;402012;402013;402014;402015;402016	402011		1039	17	
TEFLSLLAK	1	Unmodified	1020.5855	0.58554733	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	82.557	81.803	2	3.5449E-06	72747	160511_QHF_FH_JSI10i_2	122.52	75.449			0.92408	0.9445	11.853	4	1	Median	0.92243	0.78618	NaN	1	1	Median	0.76022	0.91323	NaN	1	0	Median	0.95523	0.97685	NaN	1	0	Median	0.92573	1.0348	NaN	1	0	Median	484420000	250870000	233550000	80944000	40854000	40089000	147770000	74257000	73512000	136460000	74131000	62327000	119250000	61628000	57619000	49561	2332	46658	299214;299215;299216;299217	402017;402018;402019;402020;402021;402022;402023	402023			7	
TEFQLLYVYHLVGPFLQR	0	Unmodified	2222.1888	0.18881041	5402	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	97.167	88.978	3	1.3304E-44	52946	160513_QHF_FH_JSI10Kac_6	186.68	165.08			1.057	1.1276	14.561	3	0	Median	NaN	NaN	NaN	0	0	Median	0.92597	1.0672	NaN	1	0	Median	1.4812	1.4053	NaN	1	0	Median	1.057	1.1276	NaN	1	0	Median	410150000	174320000	235830000	0	0	0	180470000	88159000	92311000	131590000	41603000	89984000	98092000	44555000	53537000	49562	5402	46659	299218;299219;299220	402024;402025;402026	402026			2	
TEFSPAAFEQEQLGSPQVR	0	Unmodified	2120.0174	0.017447563	3850	Q92585	MAML1	Mastermind-like protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		57.846	57.846	3	0.047099	51236	160511_QHF_FH_JSI11i_3	13.23	4.7297			0.52642	0.49574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52642	0.49574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122800000	77215000	45589000	0	0	0	0	0	0	122800000	77215000	45589000	0	0	0	49563	3850	46660	299221	402027	402027			1	
TEFTQGMILPTMNGESVDPVGQPALK	1	Unmodified	2759.351	0.35100265	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	97.492	97.321	3;4	7.2561E-14	86131	160511_QHF_FH_JSI9i_1	85.423	82.457			1.0623	1.0196	29.844	6	2	Median	0.9078	0.73233	41.076	2	1	Median	0.95775	1.1243	24.414	2	1	Median	1.0877	1.0636	NaN	1	0	Median	1.0374	1.0617	NaN	1	0	Median	581380000	280700000	300680000	141790000	64686000	77109000	155360000	77977000	77384000	109980000	58654000	51328000	174240000	79386000	94854000	49564	694	46661	299222;299223;299224;299225;299226;299227	402028;402029;402030;402031;402032;402033;402034;402035;402036;402037;402038;402039	402038			12	
TEFVVDNGLNPVWPAK	1	Unmodified	1784.9097	0.90973501	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.571	86.085	2	0.035988	78376	160511_QHF_FH_JSI12i_1	46.378	22.773			0.3058	0.31575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3058	0.31575	NaN	1	1	Median	19134000	15694000	3440000	0	0	0	0	0	0	0	0	0	19134000	15694000	3440000	49565	1152	46662	299228	402040	402040			1	
TEGAAEAK	1	Unmodified	775.3712	0.37119746	2101	P80723	BASP1	Brain acid soluble protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.71	17	2	3							9	5	4	4	1.5693	1.2018	2	9.602E-05	813	160511_QHF_FH_JSI12i_1	130.27	75.746			1.4895	1.3736	78.548	19	6	Median	1.1552	0.95613	49.514	8	2	Median	3.0707	3.6408	67.024	4	2	Median	1.8248	1.7651	70.074	3	1	Median	1.4757	1.5564	97.325	4	1	Median	4305900000	1623600000	2682300000	539430000	243330000	296100000	1200000000	330130000	869870000	1315100000	486090000	829050000	1251400000	564090000	687300000	49566	2101	46663	299229;299230;299231;299232;299233;299234;299235;299236;299237;299238;299239;299240;299241;299242;299243;299244;299245;299246;299247;299248;299249;299250	402041;402042;402043;402044;402045;402046;402047;402048;402049;402050;402051;402052;402053;402054;402055;402056;402057;402058;402059;402060;402061;402062;402063;402064;402065;402066;402067;402068;402069;402070;402071;402072;402073;402074;402075	402051			35	
TEGAEATPGAQK	1	Unmodified	1158.5517	0.55168102	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.3583	8.0089	2	7.3366E-32	5882	160511_QHF_FH_JSI10i_1	194.94	141.77			0.94527	0.89774	20.743	4	0	Median	1.0488	0.87555	NaN	1	0	Median	0.75188	0.89613	NaN	1	0	Median	1.3887	1.3471	NaN	1	0	Median	0.85198	0.89935	NaN	1	0	Median	640550000	344490000	296060000	144630000	69215000	75419000	188510000	114860000	73651000	164290000	81126000	83166000	143120000	79294000	63825000	49567	2752	46664	299251;299252;299253;299254	402076;402077;402078;402079;402080;402081;402082;402083	402082			8	
TEGDEEAEEEQEENLEASGDYK	1	Unmodified	2499.9885	0.98851102	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	41.817	41.172	2;3	4.5916E-239	36355	160511_QHF_FH_JSI9i_1	417.62	417.62			1.0429	1.0308	9.7532	8	0	Median	1.0877	0.90099	5.407	2	0	Median	0.97206	1.1369	0.094399	2	0	Median	1.0431	1.0062	0.13422	2	0	Median	1.0437	1.0859	4.0887	2	0	Median	3149700000	1546500000	1603200000	308700000	141440000	167270000	783740000	400610000	383130000	1055600000	475900000	579680000	1001700000	528590000	473110000	49568	1023	46665	299255;299256;299257;299258;299259;299260;299261;299262	402084;402085;402086;402087;402088;402089;402090;402091;402092;402093;402094;402095;402096;402097;402098;402099;402100;402101;402102;402103	402102			20	
TEGISTSDIITR	0	Unmodified	1291.662	0.66195975	1663	P49585;Q9Y5K3	PCYT1A;PCYT1B	Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B	yes	no	0	0	0	0				By MS/MS	1	0	1												1	46.199	45.547	2	0.0024136	41349	160511_QHF_FH_JSI12i_1	70.675	38.741			1.323	1.3864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.323	1.3864	NaN	1	1	Median	50649000	20190000	30460000	0	0	0	0	0	0	0	0	0	50649000	20190000	30460000	49569	1663	46666	299263	402104	402104			1	
TEGKPAEVK	2	Unmodified	957.51311	0.51311067	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.567	2	6	1							1	2	3	3	5.8405	5.5512	2;3	0.0083892	3367	160511_QHF_FH_JSI11i_2	42.395	18.966			0.86826	1.032	25.718	9	0	Median	1.2272	1.032	NaN	1	0	Median	0.84086	1.0355	3.7168	2	0	Median	1.0968	1.1198	21.272	3	0	Median	0.76212	0.81137	10.984	3	0	Plateau	1785000000	919340000	865620000	235490000	112130000	123360000	351440000	212490000	138950000	889640000	421380000	468260000	308390000	173340000	135050000	49570	1298	46667	299264;299265;299266;299267;299268;299269;299270;299271;299272	402105;402106;402107;402108;402109;402110	402106			6	
TEGLSVLSQAMAVIK	1	Unmodified	1545.8436	0.84362928	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.37	1	9							4	4	3	4	3	97.898	95.102	2;3	9.4077E-234	89621	160511_QHF_FH_JSI10i_2	343.87	309.12			0.97114	0.98844	30.991	12	1	Median	1.0143	0.85848	48.092	4	1	Median	0.68625	0.82079	9.7625	2	0	Median	1.0106	1.04	12.15	4	0	Median	0.97114	1.0843	0.6673	2	0	Median	2875900000	1454100000	1421800000	647190000	312730000	334460000	489930000	339030000	150900000	1099800000	539800000	560030000	638990000	262570000	376420000	49571	832	46668	299273;299274;299275;299276;299277;299278;299279;299280;299281;299282;299283;299284;299285;299286	402111;402112;402113;402114;402115;402116;402117;402118;402119;402120;402121;402122;402123;402124;402125;402126;402127;402128	402123			17	
TEGNEQMK	1	Unmodified	935.40185	0.40184566	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	5.3532	2.2877	2	1.3166E-06	2907	160511_QHF_FH_JSI10i_1	148.99	130.26			0.92988	1.0738	22.066	5	0	Median	NaN	NaN	NaN	0	0	Median	0.9384	1.084	1.335	2	0	Median	1.028	0.99873	42.795	2	0	Median	0.90474	0.96346	NaN	1	0	Median	1087700000	555790000	531920000	0	0	0	399390000	214680000	184710000	350160000	148710000	201450000	338160000	192400000	145760000	49572	372	46669	299287;299288;299289;299290;299291	402129;402130;402131;402132;402133;402134;402135	402134			7	
TEGPSPALLEETPLEPAVGPK	1	Unmodified	2131.1049	0.10486559	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				84.927	84.093	2	1.8956E-17	74829	160511_QHF_FH_JSI9i_1	138.87	111.22			1.2322	1.0356	NaN	1	1	Median	1.2322	1.0356	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9133300	2921500	6211800	9133300	2921500	6211800	0	0	0	0	0	0	0	0	0	49573	681	46670	299292	402136	402136			1	
TEGSDLCDR	0	Unmodified	1051.424	0.42403766	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	9.7188	9.4743	2	0.00057567	7284	160511_QHF_FH_JSI10i_1	78.113	72.454			1.0613	1.0784	16.994	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.136	1.33	NaN	1	0	Median	1.0613	1.0169	NaN	1	0	Median	1.3156	1.3932	NaN	1	0	Median	400660000	190650000	210020000	0	0	0	135720000	64549000	71171000	156210000	71125000	85084000	108740000	54973000	53763000	49574	816	46671	299293;299294;299295	402137;402138	402138			2	
TEGSDLCDRVSEMQK	1	Unmodified	1753.7611	0.76109822	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		36.638	36.204	3	0.01724	30881	160511_QHF_FH_JSI11i_2	44.196	24.873			1.0976	1.0969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0976	1.0969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26927000	11209000	15718000	0	0	0	0	0	0	26927000	11209000	15718000	0	0	0	49575	816	46672	299296	402139	402139			1	
TEGSLEDWDIAVQK	1	Unmodified	1589.7573	0.7573167	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	68.963	68.396	2	7.5695E-52	61894	160511_QHF_FH_JSI10i_1	215.5	184.63			1.0416	1.0761	3.8365	4	0	Linear	1.2291	0.98738	NaN	1	0	Median	0.91088	1.0725	NaN	1	0	Median	1.0904	1.0588	NaN	1	0	Median	0.99496	1.0136	NaN	1	0	Median	340260000	179820000	160440000	59707000	28747000	30960000	108670000	64441000	44231000	88723000	45951000	42771000	83159000	40684000	42476000	49576	2604	46673	299297;299298;299299;299300	402140;402141;402142;402143;402144;402145;402146;402147	402145			8	
TEGTAHSSNTSDVDFTGASSAK	1	Unmodified	2168.9458	0.94579876	5612	Q9Y483	MTF2	Metal-response element-binding transcription factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.686	24.13	3	4.2454E-07	21145	160511_QHF_FH_JSI10i_1	79.143	77.954			1.1686	0.89758	22.636	4	0	Linear	0.82329	0.69482	NaN	1	0	Median	0.76192	0.86625	NaN	1	0	Median	1.2628	1.2034	NaN	1	0	Median	0.90364	0.93005	NaN	1	0	Median	129140000	68395000	60742000	30622000	14045000	16577000	24157000	15189000	8967900	39821000	21194000	18627000	34538000	17967000	16571000	49577	5612	46674	299301;299302;299303;299304	402148;402149;402150;402151;402152;402153;402154	402153			7	
TEGWSKNFK	2	Acetyl (K)	1137.5455	0.54547343	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	50.766	40.35	2	0.046815	23135	160513_QHF_FH_JSI12Kac_4	51.346	31.642			0.70886	0.76933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70886	0.76933	NaN	1	1	Median	4156000	2537200	1618800	0	0	0	0	0	0	0	0	0	4156000	2537200	1618800	49578	4119	46675	299305	402155	402155			1	
TEHALLEGFNIR	0	Unmodified	1398.7256	0.72556306	4666	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	60.096	59.718	3	7.0833E-05	52985	160511_QHF_FH_JSI11i_3	56.551	49.819			0.89692	0.89602	1.9807	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71229	0.86729	NaN	1	0	Median	0.96996	0.89602	NaN	1	0	Median	0.89692	0.8989	NaN	1	1	Median	116870000	69869000	46999000	0	0	0	22909000	14485000	8424000	41060000	23244000	17816000	52899000	32140000	20760000	49579	4666	46676	299306;299307;299308	402156;402157;402158;402159	402156			4	
TEIIILATR	0	Unmodified	1028.623	0.62299547	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	4.43	3	4	4		1	4	3	58	4	25	28	8	20	73.618	64.597	2	5.5722E-11	31369	160513_QHF_FH_JSI10Kac_5	152.34	100.55			0.90498	1.0108	17.99	71	7	Median	1.2696	1.0443	29.009	20	4	Median	0.85436	1.0301	8.5504	25	3	Median	0.94076	0.92901	12.684	8	0	Median	0.83796	0.9288	13.583	18	0	Median	4371300000	2234900000	2136400000	784590000	349280000	435310000	966080000	495340000	470730000	1493000000	790480000	702570000	1127600000	599770000	527790000	49580	1227	46677	299309;299310;299311;299312;299313;299314;299315;299316;299317;299318;299319;299320;299321;299322;299323;299324;299325;299326;299327;299328;299329;299330;299331;299332;299333;299334;299335;299336;299337;299338;299339;299340;299341;299342;299343;299344;299345;299346;299347;299348;299349;299350;299351;299352;299353;299354;299355;299356;299357;299358;299359;299360;299361;299362;299363;299364;299365;299366;299367;299368;299369;299370;299371;299372;299373;299374;299375;299376;299377;299378;299379;299380;299381;299382;299383;299384;299385;299386;299387;299388;299389	402160;402161;402162;402163;402164;402165;402166;402167;402168;402169;402170;402171;402172;402173;402174;402175;402176;402177;402178;402179;402180;402181;402182;402183;402184;402185;402186;402187;402188;402189;402190;402191;402192;402193;402194;402195;402196;402197;402198;402199;402200;402201;402202;402203;402204;402205;402206;402207;402208;402209;402210;402211;402212;402213;402214;402215;402216;402217;402218;402219;402220;402221;402222;402223;402224;402225;402226;402227;402228;402229;402230;402231;402232;402233;402234;402235;402236;402237;402238;402239;402240;402241;402242;402243;402244;402245;402246;402247;402248;402249;402250;402251;402252;402253;402254;402255;402256;402257;402258;402259;402260;402261;402262;402263;402264;402265;402266;402267;402268;402269;402270;402271;402272;402273;402274;402275;402276;402277;402278;402279;402280;402281;402282;402283;402284;402285;402286;402287;402288;402289;402290;402291;402292;402293	402253			134	
TEILPPFFK	1	Unmodified	1090.6063	0.60628277	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.31	3	4	2					5		4	4	3	3	87.216	83.343	2	1.3681E-05	76436	160511_QHF_FH_JSI11i_2	109.86	68.21			1.0045	1.013	12.603	12	0	Median	1.1974	1.0156	18.343	3	0	Median	0.99557	1.2038	10.527	3	0	Plateau	1.0136	0.99459	10.419	3	0	Median	1.0679	1.1644	14.969	3	0	Plateau	1013500000	515840000	497650000	203780000	102000000	101780000	252640000	123570000	129070000	331660000	180330000	151330000	225400000	109930000	115470000	49581	542	46678	299390;299391;299392;299393;299394;299395;299396;299397;299398;299399;299400;299401;299402;299403	402294;402295;402296;402297;402298;402299;402300;402301;402302;402303;402304;402305;402306;402307;402308;402309;402310;402311;402312;402313;402314;402315;402316;402317;402318;402319;402320;402321;402322	402313			29	
TEILSLEK	1	Unmodified	931.52261	0.52261272	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	48.296	47.526	2	0.024076	42653	160511_QHF_FH_JSI10i_1	53.775	3.6482			1.2205	1.2494	9.0095	3	1	Median	1.3163	1.0777	NaN	1	0	Median	1.0841	1.2687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2205	1.2494	NaN	1	0	Median	214040000	97133000	116900000	54694000	26001000	28693000	92348000	44820000	47528000	0	0	0	66995000	26312000	40683000	49582	4608	46679	299404;299405;299406	402323;402324	402323			2	
TEIMSPLYQDEAPK	1	Unmodified	1620.7705	0.77052392	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	60.206	59.418	2;3	9.4826E-12	52707	160511_QHF_FH_JSI9i_1	199.19	175.2			0.86867	0.83693	13.26	5	4	Median	0.87309	0.73302	7.818	2	1	Median	NaN	NaN	NaN	0	0	Median	0.98547	0.97236	NaN	1	1	Median	0.8359	0.87213	5.8265	2	2	Median	569650000	300320000	269330000	145390000	79790000	65601000	0	0	0	177910000	78635000	99279000	246340000	141890000	104450000	49583	3460	46680	299407;299408;299409;299410;299411	402325;402326;402327;402328;402329	402328			4	
TEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLK	1	Unmodified	4478.3472	0.34722771	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.47	100.75	4	3.0098E-24	59721	160513_QHF_FH_JSI10Kac_6	107.96	100.82			1.2802	1.5395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2802	1.5395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27757000	19976000	7780700	0	0	0	27757000	19976000	7780700	0	0	0	0	0	0	49584	1578	46681	299412	402330	402330			1	
TEIQTLFKR	1	Acetyl (K)	1176.6503	0.65027285	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.462	61.696	2	0.0047092	32976	160513_QHF_FH_JSI11Kac_5	81.594	41.55			0.2081	0.2045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2081	0.2045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1961900	1585600	376330	0	0	0	0	0	0	1961900	1585600	376330	0	0	0	49585	3555	46682	299413	402331	402331	2884		1	
TEISEMNR	0	Oxidation (M)	994.43896	0.43895945	51	CON__P05787;P05787;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	5	8					1	1			2	2	3	3	13.341	12.177	2	0.00055334	4608	160513_QHF_FH_JSI12Kac_3	107.66	79.558		+	0.89592	0.92216	51.443	9	1	Median	0.82716	0.67558	44.002	2	0	Median	0.43086	0.50199	84.673	2	0	Median	0.97453	0.94201	18.138	2	0	Median	1.4368	1.4983	21.525	3	1	Plateau	2543500000	1317000000	1226400000	472240000	248260000	223980000	514940000	298420000	216520000	706300000	360150000	346150000	849980000	410190000	439790000	49586	51	46683	299414;299415;299416;299417;299418;299419;299420;299421;299422;299423	402332;402333;402334;402335;402336;402337;402338;402339;402340;402341	402341		26	10	
TEISEMNR	0	Unmodified	978.44404	0.44404482	51	CON__P05787;P05787;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.85	5	4				2	3			2	5	3	4	20.518	17.321	2	3.9037E-30	14312	160511_QHF_FH_JSI11i_2	203.57	184.79		+	0.92551	0.987	23.162	14	1	Median	1.0764	0.91108	11.06	2	0	Median	0.8072	1.0045	35.938	5	1	Median	1.1008	1.0944	11.821	3	0	Median	0.87944	0.95285	18.345	4	0	Median	12326000000	6471300000	5854900000	2328500000	1069400000	1259100000	4345500000	2600400000	1745100000	2725500000	1339600000	1386000000	2926700000	1461900000	1464700000	49587	51	46683	299424;299425;299426;299427;299428;299429;299430;299431;299432;299433;299434;299435;299436;299437	402342;402343;402344;402345;402346;402347;402348;402349;402350;402351;402352;402353;402354;402355;402356;402357;402358	402352			17	
TEISFRPNDPK	1	Unmodified	1302.6568	0.65681479	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	1	By MS/MS		By matching	By matching	2	0		3								1		1	1	34.252	33.322	3	0.019449	28842	160511_QHF_FH_JSI9i_2	27.428	13.464			0.84267	0.73569	35.107	3	0	Plateau	0.80961	0.68719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0489	1.0402	NaN	1	0	Median	1.2739	1.3811	NaN	1	0	Median	268850000	129210000	139640000	160470000	77155000	83317000	0	0	0	82829000	41542000	41286000	25552000	10510000	15041000	49588	822	46684	299438;299439;299440	402359	402359			1	
TEISVESK	1	Unmodified	891.45493	0.45492709	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.66	2					1				1	1	1		22.875	18.915	2	0.0025104	15892	160511_QHF_FH_JSI9i_1	77.732	20.451			1.1398	1.2221	30.702	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82052	0.98363	NaN	1	0	Median	1.5833	1.5185	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84856000	46754000	38102000	0	0	0	82096000	45486000	36611000	2759800	1268800	1491000	0	0	0	49589	3053	46685	299441;299442;299443	402360;402361;402362	402362			3	
TEIVALHAQQDR	0	Unmodified	1379.7157	0.71572665	3970	Q96AQ8	MCUR1	Mitochondrial calcium uniporter regulator 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	30.553	29.245	2	1.3811E-05	24658	160511_QHF_FH_JSI12i_2	94.297	83.145			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49590	3970	46686	299444	402363	402363			1	
TEIVFTGEK	1	Unmodified	1022.5284	0.52842638	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		40.906	40.263	2	0.0002709	35586	160511_QHF_FH_JSI9i_1	96.331	53.085			1.4988	1.7011	17.52	3	1	Plateau	1.4793	1.2366	NaN	1	1	Median	1.4988	1.724	NaN	1	0	Median	1.6598	1.6078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	808460000	305180000	503270000	207560000	78300000	129260000	317720000	122110000	195610000	283170000	104770000	178400000	0	0	0	49591	2147	46687	299445;299446;299447	402364;402365;402366;402367	402367			4	
TELAEPIAIRPTSETVMYPAYAK	1	Unmodified	2550.304	0.3039761	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.68	2.97	4	10	4					1		4	4	6	5	79.154	77.903	2;3;4	3.0676E-48	69505	160511_QHF_FH_JSI10i_2	209.01	194.61			0.95511	0.98445	14.468	19	0	Median	1.1465	0.97039	31.385	4	0	Median	0.82841	0.96542	6.3849	4	0	Median	1.0128	0.99334	3.0982	6	0	Median	0.95511	1.0225	8.0857	5	0	Median	5338900000	2643700000	2695200000	929990000	414710000	515280000	1164100000	649560000	514590000	1786500000	832370000	954080000	1458300000	747080000	711250000	49592	878	46688	299448;299449;299450;299451;299452;299453;299454;299455;299456;299457;299458;299459;299460;299461;299462;299463;299464;299465;299466	402368;402369;402370;402371;402372;402373;402374;402375;402376;402377;402378;402379;402380;402381;402382;402383;402384;402385;402386;402387;402388;402389;402390;402391;402392;402393;402394;402395;402396;402397;402398;402399;402400;402401;402402;402403;402404;402405;402406;402407;402408;402409;402410;402411;402412	402406			45	
TELAEPIAIRPTSETVMYPAYAK	1	Oxidation (M)	2566.2989	0.29889072	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	4.21	3	4	1					1		1	2	3	3	72.993	71.264	3	9.5071E-11	62970	160511_QHF_FH_JSI11i_2	105.67	102.79			0.9646	1.0286	6.9467	9	1	Median	1.1992	1.0356	NaN	1	0	Median	0.84092	0.98097	11.944	2	1	Median	0.9646	0.98218	7.4366	3	0	Median	0.99073	1.0286	6.212	3	0	Plateau	671010000	340410000	330600000	97228000	44158000	53070000	151090000	80465000	70621000	188920000	102290000	86627000	233780000	113500000	120280000	49593	878	46688	299467;299468;299469;299470;299471;299472;299473;299474;299475	402413;402414;402415;402416;402417;402418;402419;402420;402421;402422	402418		431	10	
TELAEPIAIRPTSETVMYPAYAKWVQSHR	1	Acetyl (K)	3385.7129	0.71289647	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		85.82	76.501	4	7.6913E-10	42444	160513_QHF_FH_JSI11Kac_6	111.64	101.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44386000	44386000	0	0	0	0	0	0	0	44386000	44386000	0	0	0	0	49594	878	46689	299476	402423	402423	594		1	
TELATQEK	1	Unmodified	918.46583	0.46582612	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	5	5.66	2					1				1		1	1	12.252	9.391	2	0.025991	6125	160513_QHF_FH_JSI11Kac_3	52.403	6.387			1.2083	1.1679	56.652	3	0	Median	0.65488	0.54372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2083	1.1679	NaN	1	0	Median	1.5363	1.644	NaN	1	0	Median	312720000	192590000	120120000	202270000	133430000	68838000	0	0	0	3545800	1905800	1640000	106900000	57252000	49646000	49595	2636	46690	299477;299478;299479	402424;402425	402425			2	
TELDAHLENLLSK	1	Unmodified	1481.7726	0.77257283	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	70.346	69.374	2;3	2.3336E-07	61559	160511_QHF_FH_JSI10i_2	89.613	74.514			1.0531	1.0986	12.227	5	0	Median	1.211	1.0233	NaN	1	0	Median	0.71668	0.86394	NaN	1	0	Median	1.1681	1.1644	NaN	1	0	Median	1.029	1.1245	3.2925	2	0	Median	295230000	147890000	147340000	40763000	16341000	24423000	52418000	31973000	20444000	99962000	51512000	48449000	102090000	48064000	54027000	49596	5559	46691	299480;299481;299482;299483;299484;299485;299486	402426;402427;402428;402429;402430;402431;402432;402433;402434;402435;402436;402437	402437			12	
TELDILK	1	Unmodified	830.47493	0.47493425	2996	Q5VWZ2	LYPLAL1	Lysophospholipase-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.301	51.631	2	0.0062314	46898	160511_QHF_FH_JSI12i_1	91.906	8.292			0.95878	1.0113	8.6503	4	0	Median	1.2594	1.0014	NaN	1	0	Median	0.87344	1.0213	NaN	1	0	Median	0.9279	0.86515	NaN	1	0	Median	0.99069	1.05	NaN	1	0	Median	169090000	92389000	76698000	26214000	11885000	14330000	47638000	24076000	23562000	50049000	28662000	21387000	45186000	27766000	17420000	49597	2996	46692	299487;299488;299489;299490	402438;402439;402440;402441	402439			4	
TELDSFLIEITANILK	1	Unmodified	1818.9979	0.99788132	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.55		7	1						4	3	5	2	2	102.94	100.15	2;3	8.0072E-137	91552	160511_QHF_FH_JSI11i_2	284.15	229.54			0.82815	0.92623	20.624	11	1	Median	1.4462	1.2481	13.236	3	0	Plateau	0.82995	0.99655	18.095	4	0	Linear	0.96391	0.96976	11.059	2	0	Median	0.69103	0.76074	27.835	2	1	Median	1400500000	693770000	706710000	445740000	186270000	259460000	751250000	403770000	347480000	162830000	78926000	83905000	40659000	24803000	15856000	49598	1764	46693	299491;299492;299493;299494;299495;299496;299497;299498;299499;299500;299501;299502	402442;402443;402444;402445;402446;402447;402448;402449;402450;402451;402452;402453;402454;402455;402456;402457;402458;402459;402460;402461;402462	402451			21	
TELEDTLDSTAAQQELR	0	Unmodified	1918.912	0.91197944	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.359	60.719	2;3	0	55144	160511_QHF_FH_JSI11i_1	466.25	443.33			1.0001	1.0228	4.5173	8	0	Median	1.2326	1.016	0.99372	2	0	Median	0.92319	1.0947	3.7837	2	0	Median	1.0932	1.0637	5.5903	2	0	Median	0.94522	1.0069	1.853	2	0	Median	4222100000	2055100000	2166900000	877720000	396970000	480740000	1214400000	633410000	580990000	1110100000	489920000	620140000	1019900000	534830000	485040000	49599	1436	46694	299503;299504;299505;299506;299507;299508;299509;299510	402463;402464;402465;402466;402467;402468;402469;402470;402471;402472;402473;402474;402475;402476;402477;402478	402464			16	
TELEDTLDTTAAQQELR	0	Unmodified	1932.9276	0.9276295	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			63.191	62.81	2	7.329E-06	56886	160511_QHF_FH_JSI10i_1	109	92.084			0.59484	0.66086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59484	0.66086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19020000	14188000	4831600	0	0	0	19020000	14188000	4831600	0	0	0	0	0	0	49600	1437	46695	299511	402479	402479			1	
TELETAMGMIIDVFSR	0	Acetyl (Protein N-term)	1853.8903	0.89032148	1268	P25815	S100P	Protein S100-P	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.91	3	4	3	1					3	4	4	4	2	105.48	102.84	2	1.2181E-69	52758	160513_QHF_FH_JSI12Kac_6	256.52	223.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49601	1268	46696	299512;299513;299514;299515;299516;299517;299518;299519;299520;299521;299522;299523;299524;299525	402480;402481;402482;402483;402484;402485;402486;402487;402488;402489;402490;402491;402492;402493;402494	402493			15	
TELETAMGMIIDVFSR	0	Acetyl (Protein N-term);Oxidation (M)	1869.8852	0.8852361	1268	P25815	S100P	Protein S100-P	yes	yes	0	1	1	0			By MS/MS		2	0		1										1		104.31	104.22	2	0.0001045	91975	160511_QHF_FH_JSI11i_2	83.617	69.459			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49602	1268	46696	299526	402495	402495		895	1	
TELGLDLGLEPK	1	Unmodified	1283.6973	0.69728262	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	77.374	77.022	2	0.0010575	70152	160511_QHF_FH_JSI12i_1	76.927	64.137			0.86583	0.94218	23.108	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72085	0.80015	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.04	1.1094	NaN	1	1	Median	42289000	21652000	20637000	0	0	0	19112000	13233000	5878900	0	0	0	23177000	8419300	14758000	49603	3323	46697	299527;299528	402496;402497	402496			2	
TELHGQLISVEK	1	Unmodified	1352.73	0.72997974	5066	Q9NWH9	SLTM	SAFB-like transcription modulator	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									2	3	2	40.522	39.591	2;3	7.8375E-05	33976	160511_QHF_FH_JSI12i_2	57.034	52.73			1.4502	1.194	25.48	6	2	Linear	NaN	NaN	NaN	0	0	Median	1.0156	1.2571	25.589	2	1	Median	1.2871	1.2797	17.42	2	1	Median	0.89583	0.9724	36.651	2	0	Median	372240000	169070000	203160000	0	0	0	97208000	45939000	51269000	176640000	76913000	99730000	98386000	46223000	52163000	49604	5066	46698	299529;299530;299531;299532;299533;299534;299535	402498;402499;402500;402501;402502;402503;402504	402500			7	
TELISVSEVHPSR	0	Unmodified	1452.7573	0.75725712	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.41		6	1					6		3	3	3	4	51.179	44.998	2;3	6.2225E-06	38669	160511_QHF_FH_JSI11i_2	87.001	66.697			1.1166	1.0555	28.702	11	5	Median	1.1487	0.98044	52.054	3	2	Plateau	0.77299	0.93409	17.288	2	2	Median	1.0254	1.0291	5.6474	2	1	Median	1.122	1.2358	17.932	4	0	Median	459170000	224590000	234580000	125980000	47163000	78814000	137480000	79833000	57647000	26527000	12767000	13760000	169190000	84825000	84363000	49605	1528	46699	299536;299537;299538;299539;299540;299541;299542;299543;299544;299545;299546;299547;299548	402505;402506;402507;402508;402509;402510;402511;402512;402513;402514;402515;402516	402510			12	
TELLAAGSPGENK	1	Unmodified	1285.6514	0.65139506	4786	Q9H8M5	CNNM2	Metal transporter CNNM2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.361	29.036	2	0.04237	25807	160511_QHF_FH_JSI10i_1	38.303	0			0.75022	0.90091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75022	0.90091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67295000	37038000	30258000	0	0	0	67295000	37038000	30258000	0	0	0	0	0	0	49606	4786	46700	299549	402517	402517			1	
TELLGEETPMAADEGSAEK	1	Unmodified	1976.8885	0.8884668	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.48	56.82	2	1.8494E-33	51244	160511_QHF_FH_JSI10i_1	157.38	124.44			0.7689	0.80384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7689	0.80384	NaN	1	1	Median	7952100	3960800	3991400	0	0	0	0	0	0	0	0	0	7952100	3960800	3991400	49607	4805	46701	299550;299551;299552;299553	402518;402519;402520;402521	402520			4	
TELLNVCMNAK	1	Unmodified	1291.6264	0.62644264	1074	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	56.026	55.365	2	7.8586E-13	50311	160511_QHF_FH_JSI12i_1	142.04	124.13			1.0823	1.1342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0823	1.1342	NaN	1	0	Median	121330000	73342000	47990000	0	0	0	0	0	0	0	0	0	121330000	73342000	47990000	49608	1074	46702	299554;299555	402522;402523;402524	402524			3	
TELLQRPGIEDVAVLK	1	Unmodified	1780.0094	0.0094490594	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	72.23	71.754	3	0.00018923	62334	160511_QHF_FH_JSI12i_3	68.576	57.056			1.1034	1.1294	33.449	4	1	Median	0.8736	0.74273	NaN	1	0	Median	0.78015	0.96984	NaN	1	0	Median	1.3935	1.3152	NaN	1	1	Median	1.5585	1.5858	NaN	1	0	Median	290130000	163540000	126580000	35578000	22767000	12811000	48423000	31303000	17120000	109410000	64355000	45051000	96722000	45119000	51603000	49609	2627	46703	299556;299557;299558;299559;299560;299561	402525;402526;402527;402528;402529	402529			5	
TELLQRPGIEDVAVLKK	2	Unmodified	1908.1044	0.10441208	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			2							1	1			65.274	63.777	4	0.0049541	52331	160511_QHF_FH_JSI9i_3	41.912	35.931			0.73225	0.68911	42.783	2	1	Median	1.1793	0.93255	NaN	1	0	Median	0.45466	0.50922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52194000	32262000	19933000	30193000	17328000	12865000	22001000	14934000	7067500	0	0	0	0	0	0	49610	2627	46704	299562;299563	402530;402531	402531			2	
TELNSSAESEQPLDK	1	Unmodified	1646.7635	0.76352429	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.766	32.169	2	3.8329E-10	28756	160511_QHF_FH_JSI11i_1	141.58	113.57			1.3369	1.1611	18.809	5	3	Median	1.4759	1.1611	NaN	1	1	Median	0.95221	1.0872	NaN	1	0	Median	1.5027	1.4407	NaN	1	0	Median	1.0698	1.0927	28.881	2	2	Median	137760000	61775000	75988000	25994000	11266000	14728000	29679000	16278000	13401000	37274000	15906000	21368000	44817000	18326000	26491000	49611	5656	46705	299564;299565;299566;299567;299568	402532;402533;402534;402535;402536;402537;402538	402532			7	
TELPQFVSYFQQR	0	Unmodified	1641.8151	0.81510635	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							3	4	5	3	90.087	89.684	2;3	4.3495E-17	79994	160511_QHF_FH_JSI11i_3	112.5	94.178			1.078	1.0394	78.161	12	8	Median	0.50887	0.43125	76.07	3	2	Plateau	0.31641	0.38477	134.43	3	2	Plateau	0.99125	0.92888	37.851	3	2	Plateau	1.3744	1.4727	38.161	3	2	Median	699830000	349820000	350010000	159760000	78774000	80983000	111640000	68018000	43624000	235480000	126730000	108760000	192950000	76305000	116650000	49612	2509	46706	299569;299570;299571;299572;299573;299574;299575;299576;299577;299578;299579;299580;299581;299582;299583	402539;402540;402541;402542;402543;402544;402545;402546;402547;402548;402549;402550;402551;402552;402553;402554;402555	402542			17	
TELQSALLLR	0	Acetyl (Protein N-term)	1184.6765	0.6764876	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	90.354	89.905	2	1.4525E-11	81831	160511_QHF_FH_JSI12i_1	90.657	20.658			0.3839	0.39336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3839	0.39336	NaN	1	0	Median	33726000	26292000	7433400	0	0	0	0	0	0	0	0	0	33726000	26292000	7433400	49613	1988	46707	299584	402556	402556			1	
TELQSALLLRR	0	Acetyl (Protein N-term)	1340.7776	0.77759863	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	1	0	1		By MS/MS			2	0		1									1			73.802	73.041	2	0.014481	64984	160511_QHF_FH_JSI10i_2	44.318	14.544			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49614	1988	46708	299585	402557	402557			1	
TELSMPIQSHVIMTPQSQSAGR	0	Unmodified	2397.1781	0.17806408	1119	P17544	ATF7	Cyclic AMP-dependent transcription factor ATF-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	66.335	65.961	3	2.2399E-14	58678	160511_QHF_FH_JSI11i_3	126.31	118.32			0.93926	0.90043	16.53	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73212	0.90043	NaN	1	1	Median	0.93926	0.88871	NaN	1	0	Median	1.1433	1.1908	NaN	1	0	Median	135290000	66191000	69102000	0	0	0	34141000	21552000	12590000	60634000	23362000	37272000	40518000	21277000	19241000	49615	1119	46709	299586;299587;299588;299589;299590	402558;402559;402560;402561;402562;402563;402564	402559			7	
TELSQSDMFDQR	0	Oxidation (M)	1471.6249	0.62492232	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	31.226	30.654	2	0.0020493	27584	160511_QHF_FH_JSI12i_1	63.32	55.1			1.0233	1.0498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0233	1.0498	NaN	1	0	Median	34093000	15874000	18219000	0	0	0	0	0	0	0	0	0	34093000	15874000	18219000	49616	2010	46710	299591	402565	402565		1667	1	
TELSQSDMFDQR	0	Unmodified	1455.63	0.63000769	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	46.577	45.843	2	5.5745E-53	41131	160511_QHF_FH_JSI10i_1	212.89	204.97			0.88725	0.95228	9.6909	4	0	Median	1.2333	1.0171	NaN	1	0	Median	0.77766	0.9202	NaN	1	0	Median	1.0123	0.98548	NaN	1	0	Median	0.76644	0.81726	NaN	1	0	Median	2731700000	1384000000	1347800000	573000000	265480000	307520000	782090000	466730000	315360000	717280000	321590000	395690000	659360000	330170000	329190000	49617	2010	46710	299592;299593;299594;299595;299596	402566;402567;402568	402566			3	
TEMAHQLYVLQVLTFNLLEER	0	Unmodified	2546.3203	0.32029487	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.988	92.268	3	4.6405E-05	53860	160513_QHF_FH_JSI10Kac_6	110.44	94.74			0.66202	0.78139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66202	0.78139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101630000	67788000	33840000	0	0	0	101630000	67788000	33840000	0	0	0	0	0	0	49618	4141	46711	299597	402569	402569			1	
TEMDWVLK	1	Unmodified	1020.495	0.49501776	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	5	5								3	3	4		62.789	62.268	2	4.9802E-09	56751	160511_QHF_FH_JSI11i_1	133.12	58.007			1.1811	1.211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1811	1.211	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	479670000	218000000	261670000	0	0	0	0	0	0	479670000	218000000	261670000	0	0	0	49619	1775	46712	299598;299599;299600;299601;299602;299603;299604;299605;299606;299607	402570;402571;402572;402573;402574;402575;402576;402577;402578;402579	402571			10	
TEMDWVLKHSGPNSADSANDGFVR	1	Acetyl (K)	2674.2082	0.20817823	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.876	68.558	3	3.659E-60	37456	160513_QHF_FH_JSI11Kac_6	239.96	232.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76581000	76581000	0	0	0	0	0	0	0	76581000	76581000	0	0	0	0	49620	1775	46713	299608	402580	402580	1789		1	
TEMEDLMSSK	1	Unmodified	1169.4944	0.49442542	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				2	2	2	2	46.757	42.776	2	1.6999E-07	37995	160511_QHF_FH_JSI9i_1	118.71	86.777			0.92773	0.96228	36.127	8	0	Median	1.0346	0.85634	93.376	2	0	Median	0.82883	0.98069	11.372	2	0	Median	0.95649	0.92659	0.4794	2	0	Median	0.92773	0.99882	0.40511	2	0	Median	3510900000	1745600000	1765300000	1066800000	465650000	601130000	842800000	502360000	340440000	936930000	458730000	478210000	664410000	318850000	345550000	49621	1436	46714	299609;299610;299611;299612;299613;299614;299615;299616	402581;402582;402583;402584;402585;402586;402587;402588;402589;402590	402588			10	
TEMEDLMSSK	1	Oxidation (M)	1185.4893	0.48934004	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS				1	0	2									2				43.935	42.718	2	0.0082167	37889	160511_QHF_FH_JSI9i_1	75.294	62.467			1.2027	0.99708	9.7882	2	2	Median	1.2027	0.99708	9.7882	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176620000	83049000	93574000	176620000	83049000	93574000	0	0	0	0	0	0	0	0	0	49622	1436	46714	299617;299618	402591;402592	402591		1109	2	
TEMEDLMSSKDDVGK	2	Unmodified	1683.7332	0.73315214	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	46.844	46.195	2;3	2.075E-06	41489	160511_QHF_FH_JSI10i_1	141.38	127.72			0.91219	0.95778	33.482	9	2	Median	1.2545	1.0317	12.441	2	0	Median	0.99947	1.1798	21.442	2	0	Median	0.88272	0.86062	61.621	3	2	Median	0.88434	0.92792	4.479	2	0	Median	1421000000	750310000	670700000	228810000	98078000	130730000	387550000	222160000	165390000	424720000	233510000	191210000	379920000	196560000	183360000	49623	1436	46715	299619;299620;299621;299622;299623;299624;299625;299626;299627	402593;402594;402595;402596;402597;402598;402599;402600;402601;402602;402603;402604;402605;402606	402600			14	
TEMEIAMK	1	Unmodified	951.44054	0.44053935	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	37.507	36.811	2	0.014526	33351	160511_QHF_FH_JSI12i_1	60.682	34.855			1.2732	1.3596	14.208	3	3	Plateau	1.2732	1.0342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3054	1.2674	NaN	1	1	Median	1.2642	1.3596	NaN	1	1	Median	92020000	39315000	52706000	20995000	10022000	10973000	0	0	0	33912000	12196000	21716000	37113000	17097000	20016000	49624	4255	46716	299628;299629;299630	402607;402608;402609	402608			3	
TEMENEFVLIK	1	Unmodified	1351.6694	0.66935331	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.55	4	2	4				2			4	4	2	2	72.338	69.809	2	4.4605E-30	63894	160511_QHF_FH_JSI10i_1	194.54	145.75		+	0.87961	0.80883	20.704	11	2	Median	0.96677	0.85914	7.6211	3	1	Plateau	0.68564	0.79104	11.146	4	0	Median	0.69477	0.66247	36.272	2	1	Median	1.0015	1.0703	11.332	2	0	Median	4628100000	2444900000	2183200000	755360000	349590000	405770000	1239000000	725180000	513770000	1305700000	732140000	573560000	1328100000	637980000	690080000	49625	51	46717	299631;299632;299633;299634;299635;299636;299637;299638;299639;299640;299641;299642	402610;402611;402612;402613;402614;402615;402616;402617;402618;402619;402620;402621;402622;402623;402624;402625;402626;402627;402628;402629;402630;402631;402632;402633;402634	402624			25	
TEMENEFVLIK	1	Oxidation (M)	1367.6643	0.66426794	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	0		By MS/MS		By MS/MS	13.2	0.433						3	1				1		3	69.476	59.707	2	0.0013585	32073	160513_QHF_FH_JSI12Kac_4	75.294	39.35		+	0.92863	1.0113	14.313	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78109	0.90681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0095	1.1036	12.351	2	0	Median	23342000	12463000	10879000	0	0	0	6891100	3798900	3092200	0	0	0	16451000	8663800	7786900	49626	51	46717	299643;299644;299645;299646	402635;402636;402637;402638;402639	402637		22	5	
TEMENEFVLIKK	2	Unmodified	1479.7643	0.76431633	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5		8	4					4		4	5	3	4	61.598	58.028	2;3	1.5149E-07	51114	160511_QHF_FH_JSI10i_2	152.62	123.89		+	0.96997	0.99113	38.926	15	8	Median	1.1409	0.95727	37.755	3	1	Plateau	0.61525	0.73271	41.738	5	2	Median	0.94677	1.2624	17.879	3	3	Plateau	1.1142	1.2304	17.825	4	2	Median	1950900000	1011600000	939270000	245420000	102130000	143280000	430230000	257800000	172430000	410350000	170040000	240310000	864920000	481670000	383250000	49627	51	46718	299647;299648;299649;299650;299651;299652;299653;299654;299655;299656;299657;299658;299659;299660;299661;299662	402640;402641;402642;402643;402644;402645;402646;402647;402648;402649;402650;402651;402652;402653;402654;402655;402656;402657;402658;402659	402657			20	
TEMENEFVLIKK	2	Oxidation (M)	1495.7592	0.75923095	51	CON__P05787;P05787;CON__H-INV:HIT000016045	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	1	1		By MS/MS	By MS/MS		2	0		2									1	1		46.76	46.027	3	0.003328	39534	160511_QHF_FH_JSI11i_2	47.991	42.712		+	0.74581	0.84627	14.929	2	1	Median	NaN	NaN	NaN	0	0	Median	0.61682	0.76149	NaN	1	1	Median	0.90176	0.94049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	65975000	37790000	28185000	0	0	0	28928000	16545000	12383000	37047000	21245000	15802000	0	0	0	49628	51	46718	299663;299664	402660;402661	402660		22	2	
TEMIDQEEGIS	0	Unmodified	1250.5336	0.53364769	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	44.783	44.03	2	0.015853	39101	160511_QHF_FH_JSI9i_1	63.216	54.996			1.2656	1.1827	7.0977	3	1	Median	1.368	1.1193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2113	1.1827	NaN	1	0	Median	1.2656	1.2886	NaN	1	1	Median	161040000	68090000	92950000	47698000	17463000	30235000	0	0	0	57823000	27497000	30326000	55519000	23130000	32389000	49629	4292	46719	299665;299666;299667	402662;402663;402664	402664			1	
TEMQDNTYPEILR	0	Oxidation (M)	1624.7403	0.74028642	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1	0	2										1		1	48.489	47.826	2	0.0006056	43119	160511_QHF_FH_JSI10i_1	72.187	52.528			0.68914	0.73362	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68914	0.73362	NaN	1	1	Median	43001000	28847000	14154000	0	0	0	0	0	0	0	0	0	43001000	28847000	14154000	49630	300	46720	299668;299669	402665;402666	402666		119	2	
TEMQNMIELSR	0	Unmodified	1350.6272	0.62717092	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			55.48	55.084	2	1.389E-05	49773	160511_QHF_FH_JSI10i_1	128.81	75.644			0.74606	0.86422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74606	0.86422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86555000	56155000	30399000	0	0	0	86555000	56155000	30399000	0	0	0	0	0	0	49631	4996	46721	299670	402667	402667			1	
TEMSEVLTEILR	0	Unmodified	1419.7279	0.72793082	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.04	100.92	2	1.0276E-05	88706	160511_QHF_FH_JSI9i_2	118.4	81.71			1.2588	1.2992	20.137	4	2	Median	1.6283	1.3828	NaN	1	0	Median	0.76829	0.93587	NaN	1	1	Median	1.208	1.2206	NaN	1	0	Median	1.3119	1.4762	NaN	1	1	Median	601230000	280700000	320530000	91583000	28250000	63334000	126780000	73907000	52877000	232970000	111220000	121750000	149900000	67329000	82572000	49632	346	46722	299671;299672;299673;299674	402668;402669;402670;402671;402672	402669			5	
TENDHINLK	1	Unmodified	1082.5356	0.53563702	1866	P55854	SUMO3	Small ubiquitin-related modifier 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								3	2	2	3	13.971	13.38	2;3	3.2015E-06	10568	160511_QHF_FH_JSI11i_2	125.82	89.422			0.95382	0.95708	10.298	10	0	Median	1.1398	0.96678	5.3624	3	0	Median	0.76728	0.93175	2.3667	2	0	Median	0.86852	0.87345	21.905	2	0	Median	0.91509	1.0183	10.918	3	0	Median	947430000	478310000	469120000	208390000	98519000	109870000	219070000	122560000	96506000	299280000	151440000	147840000	220700000	105790000	114900000	49633	1866	46723	299675;299676;299677;299678;299679;299680;299681;299682;299683;299684	402673;402674;402675;402676;402677;402678;402679;402680;402681;402682;402683	402678			11	
TENLLGSYFPK	1	Unmodified	1267.6449	0.64485312	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.52	5	7	4				1	4		4	6	5	6	73.935	71.123	2;3	4.7992E-23	62860	160511_QHF_FH_JSI11i_2	172.27	125.81			1.1765	1.2215	49.877	19	6	Median	1.2364	1.0367	99.194	4	1	Median	0.98961	1.2215	26.681	5	2	Median	1.2727	1.2479	15.624	5	1	Median	1.0564	1.1097	10.645	5	2	Median	3335800000	1766100000	1569700000	479040000	334120000	144920000	922600000	482560000	440030000	1075900000	522690000	553260000	858260000	426740000	431520000	49634	2244	46724	299685;299686;299687;299688;299689;299690;299691;299692;299693;299694;299695;299696;299697;299698;299699;299700;299701;299702;299703;299704;299705	402684;402685;402686;402687;402688;402689;402690;402691;402692;402693;402694;402695;402696;402697;402698;402699;402700;402701;402702;402703;402704;402705;402706;402707;402708;402709;402710;402711	402703			27	
TENLVDSSVTFK	1	Unmodified	1338.6667	0.66671078	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.757	53.093	2	0.00015204	47845	160511_QHF_FH_JSI10i_1	108.77	72.374			1.042	1.0556	12.57	4	1	Median	1.3971	1.1448	NaN	1	1	Median	0.74447	0.86296	NaN	1	0	Median	1.0428	1.0104	NaN	1	0	Median	1.0413	1.1029	NaN	1	0	Median	383110000	196360000	186750000	74856000	41628000	33228000	101420000	50707000	50713000	98115000	43556000	54558000	108720000	60467000	48253000	49635	1754	46725	299706;299707;299708;299709	402712;402713;402714	402713			3	
TENNDHINLK	1	Unmodified	1196.5786	0.57856447	1968	P61956	SUMO2	Small ubiquitin-related modifier 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.64	7	8	7				6	3		7	9	7	8	15.14	12.076	2;3	6.1066E-14	9903	160511_QHF_FH_JSI12i_2	156.92	101.24			1.0366	1.061	14.401	29	1	Median	1.3965	1.1637	13.974	7	0	Median	0.88993	1.0484	13.945	9	0	Median	1.0979	1.0604	13.898	6	0	Median	0.90432	1.0182	13.654	7	1	Median	8737100000	4451700000	4285400000	1322100000	542770000	779290000	2841600000	1557200000	1284400000	2984200000	1518100000	1466100000	1589200000	833700000	755470000	49636	1968	46726	299710;299711;299712;299713;299714;299715;299716;299717;299718;299719;299720;299721;299722;299723;299724;299725;299726;299727;299728;299729;299730;299731;299732;299733;299734;299735;299736;299737;299738;299739;299740	402715;402716;402717;402718;402719;402720;402721;402722;402723;402724;402725;402726;402727;402728;402729;402730;402731;402732;402733;402734;402735;402736;402737;402738;402739;402740;402741;402742;402743;402744;402745;402746;402747;402748;402749;402750;402751;402752;402753;402754;402755;402756;402757;402758;402759;402760;402761	402719			46	
TENPGDASDLQGR	0	Unmodified	1358.6062	0.60623578	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	17.912	17.426	2	5.4283E-07	14855	160511_QHF_FH_JSI10i_1	133.91	122.2			1.164	1.1327	7.7868	4	1	Median	1.4023	1.1552	NaN	1	1	Median	0.85537	0.99127	NaN	1	0	Median	1.1713	1.1106	NaN	1	0	Median	1.1567	1.1808	NaN	1	0	Median	180870000	78359000	102510000	33789000	15796000	17993000	39148000	17776000	21373000	51210000	19244000	31966000	56720000	25543000	31177000	49637	416	46727	299741;299742;299743;299744;299745	402762;402763;402764;402765;402766;402767;402768;402769	402768			8	
TENPLILIDEVDK	1	Unmodified	1497.7926	0.79263957	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	3	1	1	93.313	92.956	2	5.4937E-31	84737	160511_QHF_FH_JSI12i_1	193.73	177.84			0.90566	0.92226	22.805	6	1	Median	0.886	0.75096	40.149	2	0	Median	0.80056	0.95189	17.995	2	1	Median	0.96002	0.9136	NaN	1	0	Median	0.8878	0.931	NaN	1	0	Median	1304400000	679740000	624670000	254640000	119430000	135200000	431620000	235000000	196610000	315160000	160350000	154800000	302990000	164940000	138050000	49638	1459	46728	299746;299747;299748;299749;299750;299751;299752	402770;402771;402772;402773;402774;402775;402776;402777;402778;402779;402780;402781;402782;402783;402784;402785;402786;402787;402788;402789	402778			20	
TENPVIMGLSSQNGQLR	0	Unmodified	1842.9258	0.92579578	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.5	0.5	4	4								2	1	3	2	65.915	65.127	2;3	2.8442E-10	56776	160511_QHF_FH_JSI11i_2	152.99	108.23			1.155	1.2189	28.209	8	3	Median	1.2707	1.073	64.797	2	1	Median	0.75239	0.892	NaN	1	0	Median	1.3021	1.0567	10.9	3	1	Plateau	1.155	1.2804	11.16	2	1	Median	259030000	127050000	131980000	34793000	13278000	21515000	62936000	36410000	26526000	105980000	47960000	58021000	55318000	29403000	25915000	49639	1271	46729	299753;299754;299755;299756;299757;299758;299759;299760	402790;402791;402792;402793;402794;402795	402795			6	
TENSGEALAK	1	Unmodified	1018.4931	0.49310351	5174	Q9P016	THYN1	Thymocyte nuclear protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.6706	9.3051	2	7.3342E-06	7191	160511_QHF_FH_JSI12i_1	107.21	79.68			0.67785	0.68466	10.719	4	1	Median	0.74568	0.62439	NaN	1	1	Median	0.64177	0.75076	NaN	1	0	Median	0.6405	0.62318	NaN	1	0	Median	0.71595	0.75131	NaN	1	0	Median	346860000	179790000	167070000	78978000	44616000	34362000	107000000	52397000	54602000	82553000	43487000	39066000	78329000	39290000	39040000	49640	5174	46730	299761;299762;299763;299764	402796;402797;402798;402799	402797			4	
TENSSLTK	1	Unmodified	878.43453	0.434526	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	6.5557	4.829	2	0.00095149	4009	160511_QHF_FH_JSI10i_1	96.027	70.088			0.76187	0.73843	8.4444	5	0	Median	1.0303	0.84432	NaN	1	0	Median	0.58506	0.67697	NaN	1	0	Median	0.78479	0.76723	5.411	2	0	Median	0.69455	0.73544	NaN	1	0	Median	823530000	463960000	359570000	185930000	88828000	97100000	205450000	137430000	68029000	226300000	117370000	108940000	205840000	120340000	85502000	49641	3328	46731	299765;299766;299767;299768;299769	402800;402801;402802;402803;402804;402805;402806;402807	402805			8	
TENVFVDEPLIHATTYIPLMDNADSSPVVDKR	1	Unmodified	3585.7661	0.76611383	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101	101.01	4	1.6556E-51	87626	160511_QHF_FH_JSI12i_3	176.18	169.17			0.86428	0.88002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86428	0.88002	NaN	1	0	Median	237570000	109640000	127930000	0	0	0	0	0	0	0	0	0	237570000	109640000	127930000	49642	3328	46732	299770	402808	402808			1	
TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR	0	Unmodified	4457.0531	0.053123966	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		62.539	62.097	4	9.5591E-23	56321	160511_QHF_FH_JSI11i_1	78.366	74.331			0.87391	0.84411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87391	0.84411	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46033000	31790000	14243000	0	0	0	0	0	0	46033000	31790000	14243000	0	0	0	49643	1867	46733	299771	402809;402810	402809			2	
TEPASIK	1	Unmodified	744.40177	0.4017693	5860				yes	yes	0	0	0	0		By MS/MS	By matching		1	0	3										2	1		17.287	17.078	2	0.038396	14500	160511_QHF_FH_JSI10i_1	48.174	17.505	+		0.76644	0.7538	53.978	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.6305	1.9199	0	2	0	Median	0.76644	0.7538	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	294920000	118710000	176200000	0	0	0	178070000	62852000	115210000	116850000	55863000	60988000	0	0	0	49644	5860	46734	299772;299773;299774	402811	402811			1	
TEPATGFIDGDLIESFLDISRPK	1	Unmodified	2520.2748	0.27478446	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	102.29	102.3	3	1.805E-19	89059	160511_QHF_FH_JSI12i_3	146.06	138.95			0.9473	0.97513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9473	0.97513	NaN	1	0	Median	309410000	169050000	140360000	0	0	0	0	0	0	0	0	0	309410000	169050000	140360000	49645	2734	46735	299775	402812;402813	402813			2	
TEPEEVSIEDSAQSDLK	1	Unmodified	1875.8585	0.85854688	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.345	52.678	2	1.7488E-11	47889	160511_QHF_FH_JSI12i_1	178.15	162.76			0.95061	0.97352	14.168	4	0	Median	0.92021	0.75553	NaN	1	0	Median	0.82019	0.98247	NaN	1	0	Median	0.99302	0.96464	NaN	1	0	Median	0.98201	1.041	NaN	1	0	Median	230480000	121800000	108680000	54486000	27089000	27396000	67470000	39614000	27856000	59272000	30605000	28668000	49249000	24491000	24758000	49646	2752	46736	299776;299777;299778;299779	402814;402815;402816;402817;402818;402819;402820	402816			7	
TEPNSQEDK	1	Unmodified	1046.4516	0.45163262	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.4	5.39	3				2						1	2	2	5.6213	2.6002	2	7.9941E-05	3157	160511_QHF_FH_JSI12i_1	95.502	44.536			2.0946	2.2205	32.011	4	0	Median	NaN	NaN	NaN	0	0	Median	2.3381	2.7968	NaN	1	0	Median	2.487	2.3809	NaN	1	0	Median	1.5538	1.6581	31.435	2	0	Median	176570000	43464000	133100000	0	0	0	64215000	17442000	46774000	37070000	418360	36651000	75284000	25604000	49680000	49647	5463	46737	299780;299781;299782;299783;299784	402821;402822;402823;402824;402825;402826	402824			6	
TEPPASTNRDTVESTR	0	Unmodified	1759.8337	0.83366954	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	15.836	15.197	3	0.0016529	12638	160511_QHF_FH_JSI9i_2	52.823	36.424			1.1622	1.0588	21.617	3	2	Median	1.2045	1.0588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80736	0.82653	NaN	1	1	Median	1.1622	1.2715	NaN	1	1	Median	69128000	28342000	40786000	33220000	15152000	18069000	0	0	0	21197000	7981300	13216000	14711000	5209400	9501500	49648	5520	46738	299785;299786;299787;299788	402827;402828;402829;402830	402828			4	
TEPSAWSQDTGDANTNGK	1	Unmodified	1877.8028	0.80276334	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	3	2	30.873	30.339	2	9.7972E-50	27268	160511_QHF_FH_JSI12i_1	260.19	233.49			0.81315	0.90504	46.726	6	5	Median	0.59987	0.48315	NaN	1	1	Median	0.84088	0.98874	NaN	1	0	Median	0.86861	0.81545	70.621	2	2	Median	1.0346	1.0758	36.958	2	2	Median	462600000	240720000	221880000	59467000	38370000	21097000	88475000	44991000	43484000	132140000	70834000	61302000	182520000	86526000	95995000	49649	3323	46739	299789;299790;299791;299792;299793;299794;299795	402831;402832;402833;402834;402835;402836;402837	402835			7	
TEPSIAEYTVR	0	Unmodified	1264.6299	0.62993134	2373	Q13217	DNAJC3	DnaJ homolog subfamily C member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		48.235	47.782	2	0.015459	43008	160511_QHF_FH_JSI10i_1	60.518	41.247			0.7493	0.9017	50.079	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.7493	0.9017	NaN	1	1	Median	0.57051	0.56164	59.344	2	1	Median	NaN	NaN	NaN	0	0	Median	292590000	169020000	123580000	0	0	0	126060000	72691000	53368000	166540000	96325000	70210000	0	0	0	49650	2373	46740	299796;299797;299798	402838;402839;402840	402839			3	
TEPSKFPFPTK	2	Acetyl (K)	1319.6762	0.67615325	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	73.462	62.776	2	0.0035909	34049	160513_QHF_FH_JSI11Kac_4	70.977	51.19			0.94711	1.0979	0.4135	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.92627	1.0915	NaN	1	0	Median	1.1161	1.0979	NaN	1	0	Median	1.0169	1.1002	NaN	1	0	Median	20257000	10312000	9945100	0	0	0	7039800	3884900	3154800	6352700	3343500	3009300	6864600	3083600	3781000	49651	5294	46741	299799;299800;299801	402841;402842;402843;402844	402843	3357		4	
TEPTAQQNLALQLAEK	1	Unmodified	1753.921	0.92102798	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.629	8		1							2	3	2	2	62.592	61.861	2;3	1.3275E-21	56087	160511_QHF_FH_JSI11i_1	187.97	145.23			0.9852	0.97369	6.7676	9	0	Median	1.217	1	7.3461	2	0	Median	0.93806	1.1151	7.1714	3	0	Plateau	0.99518	0.97004	0.33201	2	0	Median	0.98648	1.0325	10.585	2	0	Median	2915700000	1358400000	1557300000	956480000	432720000	523760000	656920000	339640000	317280000	676770000	321940000	354830000	625490000	264100000	361390000	49652	40	46742	299802;299803;299804;299805;299806;299807;299808;299809;299810	402845;402846;402847;402848;402849;402850;402851;402852;402853;402854;402855;402856;402857	402846			13	
TEPTEDSGISLEMAAVTVK	1	Unmodified	1976.9612	0.96123782	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	78.447	77.987	2;3	1.8984E-10	70675	160511_QHF_FH_JSI10i_1	133.14	116.88			1.0293	0.90553	79.574	6	3	Median	1.1473	0.91756	NaN	1	1	Median	0.60603	0.71711	NaN	1	0	Median	1.3165	1.2723	49.956	2	1	Median	2.1407	2.2795	134.63	2	1	Median	162370000	65855000	96515000	11899000	5231500	6667200	37553000	22809000	14744000	47596000	19902000	27694000	65323000	17913000	47410000	49653	2087	46743	299811;299812;299813;299814;299815;299816	402858;402859;402860;402861;402862;402863	402861			6	
TEQAISFAK	1	Acetyl (Protein N-term)	1035.5237	0.52367535	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.17	8			2	3					2	3	3	5	57.205	53.176	1;2	4.416E-17	20793	160513_QHF_FH_JSI11Kac_1	106.36	57.853			1.0542	1.0335	11.858	13	0	Median	1.1985	0.99685	0.78696	2	0	Median	0.75155	0.89568	4.9756	3	0	Median	1.0542	1.0335	7.5267	3	0	Median	1.0591	1.136	6.7254	5	0	Median	9018500000	4428000000	4590500000	2224800000	1005600000	1219200000	2238500000	1126700000	1111800000	2455000000	1203000000	1252000000	2100100000	1092600000	1007500000	49654	1014	46744	299817;299818;299819;299820;299821;299822;299823;299824;299825;299826;299827;299828;299829	402864;402865;402866;402867;402868;402869;402870;402871;402872;402873;402874;402875;402876;402877;402878;402879;402880;402881	402880			18	
TEQAISFAKDFLAGGIAAAISK	2	Acetyl (K);Acetyl (Protein N-term)	2292.2002	0.20016296	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	1	1	0	1			By MS/MS	By MS/MS	16	0									2			1	1	105.43	96.001	3	1.8816E-05	54845	160513_QHF_FH_JSI11Kac_6	112.45	102.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49655	1014	46745	299830;299831	402882;402883	402882	818		2	
TEQAISFAKDFLAGGIAAAISK	2	Acetyl (Protein N-term)	2250.1896	0.18959827	1014	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	yes	yes	0	1	0	1				By MS/MS	3	0			1										1	103.65	103.65	3	3.0378E-18	90364	160511_QHF_FH_JSI12i_3	68.552	59.952			1.5319	1.522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5319	1.522	NaN	1	0	Median	27923000	11212000	16712000	0	0	0	0	0	0	0	0	0	27923000	11212000	16712000	49656	1014	46745	299832	402884;402885	402884			2	
TEQCLVALLHK	1	Unmodified	1310.7017	0.70165649	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	58.232	57.313	3	0.012402	49579	160511_QHF_FH_JSI11i_2	35.204	29.202			0.9525	0.97114	25.412	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81804	0.81141	NaN	1	0	Median	1.1091	1.1623	NaN	1	0	Median	59662000	29690000	29972000	0	0	0	0	0	0	42624000	21810000	20813000	17038000	7879600	9158600	49657	5330	46746	299833;299834	402886	402886			1	
TEQDLALGTDAEGQK	1	Unmodified	1574.7424	0.74239491	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	34.409	33.755	2	3.1276E-21	30246	160511_QHF_FH_JSI11i_1	137.95	81.218			0.81426	0.76147	33.577	7	6	Median	0.70316	0.58069	38.33	2	1	Median	0.66599	0.78447	27.252	2	2	Median	1.3387	1.2451	NaN	1	1	Median	0.81165	0.85901	21.134	2	2	Median	397250000	208520000	188720000	84568000	48650000	35919000	120570000	69475000	51094000	69269000	30053000	39216000	122840000	60348000	62494000	49658	104	46747	299835;299836;299837;299838;299839;299840;299841;299842	402887;402888;402889;402890;402891;402892;402893;402894;402895;402896	402888			10	
TEQEDVLAK	1	Unmodified	1031.5135	0.5135046	2273	Q08499	PDE4D	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	19.489	19.034	2	7.0724E-05	16026	160511_QHF_FH_JSI9i_1	96.311	71.367			0.67399	0.65914	11.311	5	4	Median	0.74984	0.62666	NaN	1	0	Median	0.57538	0.67698	21.296	2	2	Median	0.7129	0.69207	NaN	1	1	Median	0.64818	0.65914	NaN	1	1	Median	514080000	316330000	197740000	96130000	49216000	46914000	245700000	155280000	90417000	89615000	59342000	30273000	82638000	52498000	30140000	49659	2273	46748	299843;299844;299845;299846;299847	402897;402898;402899;402900;402901;402902	402902			6	
TEQEEDEELLTESSK	1	Unmodified	1765.7741	0.77414855	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.992	38.372	2	2.5412E-159	34506	160511_QHF_FH_JSI10i_1	295.78	279.4			0.92729	0.86061	17.32	4	0	Median	0.95217	0.78268	NaN	1	0	Median	0.67145	0.77682	NaN	1	0	Median	1.1188	1.1164	NaN	1	0	Median	0.90305	0.94631	NaN	1	0	Median	396730000	192040000	204690000	71722000	37866000	33857000	99619000	46771000	52848000	131200000	59680000	71523000	94187000	47726000	46460000	49660	403	46749	299848;299849;299850;299851	402903;402904;402905;402906;402907;402908	402906			6	
TEQFCKSFENGIGK	2	Unmodified	1643.7614	0.76135622	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		83.03	73.715	4	0.058622	40705	160513_QHF_FH_JSI11Kac_6	19.211	2.272			1.0142	0.94574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0142	0.94574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53801000	26993000	26808000	0	0	0	0	0	0	53801000	26993000	26808000	0	0	0	49661	1240	46750	299852	402909	402909			1	
TEQFYRK	1	Unmodified	970.48723	0.48723027	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	10.661	10.511	2;3	0.0022099	8103	160511_QHF_FH_JSI11i_3	86.512	43.266			0.86428	0.87403	24.727	6	0	Median	0.95575	0.80402	NaN	1	0	Median	0.78156	0.95012	NaN	1	0	Median	1.086	1.0245	4.9632	2	0	Median	0.59227	0.60652	1.7183	2	0	Median	1015300000	588860000	426420000	34587000	19087000	15500000	43463000	26230000	17233000	555320000	295470000	259850000	381910000	248080000	133830000	49662	596	46751	299853;299854;299855;299856;299857;299858	402910;402911;402912;402913;402914;402915;402916	402911			7	
TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR	0	Unmodified	3120.4748	0.47483427	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		82.913	82.301	3	0.00069689	72274	160511_QHF_FH_JSI11i_2	35.96	33.131			1.0089	0.99922	4.0897	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0089	0.99922	4.0897	2	2	Median	NaN	NaN	NaN	0	0	Median	108170000	56014000	52159000	0	0	0	0	0	0	108170000	56014000	52159000	0	0	0	49663	1024	46752	299859;299860	402917;402918;402919	402918			3	
TEQGTVLIGSEHGLIEVDPVSR	0	Unmodified	2335.202	0.20195387	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		74.142	73.512	3	0.0068628	64600	160511_QHF_FH_JSI11i_2	31.505	28.217			1.4638	1.481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4638	1.481	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57131000	32397000	24734000	0	0	0	0	0	0	57131000	32397000	24734000	0	0	0	49664	648	46753	299861	402920	402920			1	
TEQMTLR	0	Acetyl (Protein N-term);Oxidation (M)	935.43823	0.43823117	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	5.16	4			3	3					1	2	3	4	19.122	14.589	2	0.0019969	6624	160513_QHF_FH_JSI11Kac_1	83.614	55.102			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49665	2061	46754	299862;299863;299864;299865;299866;299867;299868;299869;299870;299871	402921;402922;402923;402924;402925;402926;402927;402928;402929;402930	402929		1725	10	
TEQMTLR	0	Acetyl (Protein N-term)	919.44332	0.44331654	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	34.747	34.104	1;2	9.2581E-07	30733	160511_QHF_FH_JSI12i_1	157.99	77.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49666	2061	46754	299872;299873;299874;299875;299876;299877;299878	402931;402932;402933;402934;402935;402936;402937;402938	402934			8	
TEQMTLRGTLK	1	Acetyl (Protein N-term)	1318.6915	0.69148574	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	1	0	1				By MS/MS	3	0			1										1	45.999	45.757	2	4.1125E-05	39090	160511_QHF_FH_JSI12i_3	94.363	64.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35071000	35071000	0	0	0	0	0	0	0	0	0	0	35071000	35071000	0	49667	2061	46755	299879	402939	402939			1	
TEQQTADQLLAR	0	Unmodified	1372.6947	0.69465686	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	33.818	33.429	2	8.9981E-05	29854	160511_QHF_FH_JSI10i_1	91.658	56.363			1.2144	1.3737	20.519	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2144	1.3737	NaN	1	0	Median	1.8472	1.7838	NaN	1	0	Median	1.1154	1.1901	NaN	1	0	Median	82108000	36220000	45889000	0	0	0	30857000	14458000	16399000	28930000	13735000	15195000	22322000	8026900	14295000	49668	983	46756	299880;299881;299882	402940;402941;402942	402942			3	
TEQTEDLK	1	Unmodified	962.45566	0.45565537	4369	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	9.2609	8.9578	2	0.00071995	6791	160511_QHF_FH_JSI10i_1	99.136	68.417			0.88313	0.97552	7.0794	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87507	1.0256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89127	0.92789	NaN	1	0	Median	132140000	69672000	62470000	0	0	0	68525000	36518000	32007000	0	0	0	63616000	33154000	30463000	49669	4369	46757	299883;299884	402943	402943			1	
TEREQFVEFR	0	Unmodified	1339.6521	0.65206377	388	O43852	CALU	Calumenin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								2	1	1	35.277	34.65	3	6.3941E-06	28912	160511_QHF_FH_JSI10i_3	89.403	82.364			1.1229	1.157	46.047	4	1	Median	NaN	NaN	NaN	0	0	Median	0.62328	0.73815	57.794	2	1	Median	1.2817	1.2051	NaN	1	0	Median	1.3252	1.3428	NaN	1	0	Median	688220000	422390000	265830000	0	0	0	548030000	362160000	185870000	105570000	42948000	62626000	34619000	17284000	17335000	49670	388	46758	299885;299886;299887;299888	402944;402945;402946;402947;402948;402949	402946			6	
TERPPNK	1	Unmodified	840.44537	0.44536545	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		4.5824	4.5824	3	0.032439	2233	160511_QHF_FH_JSI11i_3	38.806	23.367			0.74031	0.70998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74031	0.70998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	309790000	91861000	217930000	0	0	0	0	0	0	309790000	91861000	217930000	0	0	0	49671	5330	46759	299889	402950	402950			1	
TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR	0	Unmodified	3572.7165	0.71653788	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		66.76	65.766	3	1.4294E-07	58555	160511_QHF_FH_JSI11i_3	60.181	55.175			0.82189	0.96798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82189	0.96798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38521000	22963000	15558000	3444200	0	3444200	26100000	13986000	12114000	8977000	8977000	0	0	0	0	49672	2391	46760	299890;299891;299892	402951;402952;402953;402954;402955	402951			5	
TERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTR	0	Oxidation (M)	3588.7115	0.7114525	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			59.662	58.133	4	6.5528E-05	48616	160511_QHF_FH_JSI10i_3	43.728	38.408			0.97044	1.1321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97044	1.1321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18165000	12841000	5323800	0	0	0	18165000	12841000	5323800	0	0	0	0	0	0	49673	2391	46760	299893	402956	402956		1942	1	
TESALSYYEFLLHIQQQVNK	1	Unmodified	2410.2169	0.21687565	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				91.986	83.207	3	1.0221E-05	46710	160513_QHF_FH_JSI9Kac_6	126.22	104.21			1.3952	1.17	NaN	1	1	Median	1.3952	1.17	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129910000	47366000	82542000	129910000	47366000	82542000	0	0	0	0	0	0	0	0	0	49674	700	46761	299894	402957	402957			1	
TESAVSQMQSVIELGR	0	Unmodified	1733.8618	0.86179854	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			78.273	77.553	2	0.0001869	68432	160511_QHF_FH_JSI9i_2	72.958	55.932			0.60145	0.74573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60145	0.74573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10295000	7306600	2988100	0	0	0	10295000	7306600	2988100	0	0	0	0	0	0	49675	1520	46762	299895;299896	402958;402959	402958			2	
TESDDLHTFLLEIK	1	Unmodified	1659.8356	0.83556702	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	85.01	84.173	3	7.3538E-05	72804	160511_QHF_FH_JSI12i_2	80.905	68.74			0.82192	0.93526	9.2855	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83869	0.99872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80549	0.87582	NaN	1	0	Median	38014000	17937000	20077000	0	0	0	15313000	8217100	7096200	0	0	0	22701000	9719600	12981000	49676	1443	46763	299897;299898	402960;402961;402962	402960			3	
TESEPGQQPMELENK	1	Unmodified	1715.7672	0.76722946	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	32.187	31.611	2	1.6302E-07	28474	160511_QHF_FH_JSI12i_1	92.866	78.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49677	3238	46764	299899	402963	402963			1	
TESLIQQYEAISLLNSER	0	Unmodified	2093.0641	0.064063405	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	96.166	95.895	2	1.2304E-05	84167	160511_QHF_FH_JSI11i_2	99.531	77.299			0.74447	0.72764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74447	0.72764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5151000	1195200	3955800	0	0	0	0	0	0	5151000	1195200	3955800	0	0	0	49678	5458	46765	299900;299901;299902	402964;402965;402966	402966			3	
TESNQEVANPEHYIK	1	Unmodified	1757.822	0.82204222	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	4.02	6	9					2			3	4	5	5	39.604	37.546	2;3	2.368E-11	32066	160511_QHF_FH_JSI11i_2	102.62	78.239			0.88013	0.92765	26.717	15	4	Median	0.88013	0.74845	15.948	3	1	Median	0.67713	0.81766	25.057	4	1	Median	0.88984	0.87649	33.813	4	1	Median	1.106	1.1579	6.3851	4	1	Median	1746600000	993960000	752670000	501790000	266830000	234950000	440860000	291240000	149620000	462920000	259960000	202970000	341070000	175930000	165130000	49679	853	46766	299903;299904;299905;299906;299907;299908;299909;299910;299911;299912;299913;299914;299915;299916;299917;299918;299919	402967;402968;402969;402970;402971;402972;402973;402974;402975;402976;402977;402978;402979;402980;402981;402982;402983;402984;402985;402986;402987;402988;402989;402990;402991	402985			25	
TESNQEVANPEHYIKHPLQNR	1	Acetyl (K)	2545.231	0.23096259	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		60.095	50.381	3;4	6.7765E-29	27303	160513_QHF_FH_JSI11Kac_6	156.51	148.62			0.64885	0.63455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64885	0.63455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103960000	69988000	33970000	0	0	0	0	0	0	103960000	69988000	33970000	0	0	0	49680	853	46767	299920;299921	402992;402993	402992	515		2	
TESPATAAETASEELDNR	0	Unmodified	1890.8443	0.8442938	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	55.422	54.761	2	1.7912E-07	49614	160511_QHF_FH_JSI11i_1	99.011	85.81			0.42677	0.44117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42677	0.44117	NaN	1	1	Median	30799000	22150000	8648800	0	0	0	0	0	0	0	0	0	30799000	22150000	8648800	49681	4989	46768	299922;299923	402994;402995	402994			2	
TESPVLTSSCR	0	Unmodified	1235.5816	0.58160094	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		22.034	21.827	2	0.00030488	18897	160511_QHF_FH_JSI11i_1	76.228	40.933			1.1278	1.1862	20.11	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1501	1.3675	NaN	1	0	Median	1.106	1.029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129230000	53870000	75362000	0	0	0	59869000	25362000	34506000	69363000	28507000	40856000	0	0	0	49682	4704	46769	299924;299925;299926	402996;402997;402998	402996			3	
TESSSAQQVAVSR	0	Unmodified	1348.6583	0.65827136	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	13.614	13.2	2	0.021639	10957	160511_QHF_FH_JSI12i_1	59.935	22.46			0.83321	0.85722	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83321	0.85722	NaN	1	0	Median	34483000	17617000	16866000	0	0	0	0	0	0	0	0	0	34483000	17617000	16866000	49683	1259	46770	299927	402999	402999			0	
TESTPITAVK	1	Unmodified	1045.5655	0.56554017	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.09	25.519	2	1.8035E-07	22041	160511_QHF_FH_JSI9i_1	118.18	73.096			0.93341	0.97283	8.3799	4	0	Median	1.3892	1.1298	NaN	1	0	Median	0.85109	0.99835	NaN	1	0	Median	0.97715	0.94797	NaN	1	0	Median	0.89163	0.94393	NaN	1	0	Median	1414700000	777810000	636930000	291570000	148980000	142590000	353150000	208230000	144920000	337540000	171090000	166450000	432490000	249530000	182960000	49684	5708	46771	299928;299929;299930;299931	403000;403001;403002;403003;403004;403005;403006;403007;403008;403009	403009			10	
TETAVFK	1	Unmodified	794.41742	0.41741937	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.51	19.318	2	0.041102	16618	160511_QHF_FH_JSI10i_1	46.835	23.906			1.9071	2.0333	6.3905	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8154	2.1273	NaN	1	0	Median	2.0034	1.9435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88313000	33531000	54782000	0	0	0	42512000	16874000	25638000	45801000	16657000	29144000	0	0	0	49685	2887	46772	299932;299933	403010	403010			1	
TETDSVGTPQSNGGMR	0	Unmodified	1635.7159	0.71586259	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.571	19.201	2	4.3382E-06	16523	160511_QHF_FH_JSI10i_1	119.39	94.595			0.71279	0.78259	15.502	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73985	0.87325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68672	0.70134	NaN	1	1	Median	34064000	24391000	9673600	0	0	0	15312000	12094000	3217100	0	0	0	18753000	12296000	6456500	49686	4634	46773	299934;299935;299936;299937	403011;403012;403013;403014	403013			4	
TETEPIPENTPTK	1	Unmodified	1455.7093	0.70930387	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		28.829	28.61	2	0.00044009	25436	160511_QHF_FH_JSI11i_1	92.538	66.096			1.4556	1.4126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4556	1.4126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18163000	9998400	8165100	0	0	0	0	0	0	18163000	9998400	8165100	0	0	0	49687	3140	46774	299938;299939	403015;403016	403015			2	
TETILPPESENPK	1	Unmodified	1453.73	0.73003931	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	40.303	39.798	2	2.7917E-09	36391	160511_QHF_FH_JSI12i_1	104.79	87.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49688	4673	46775	299940;299941	403017;403018	403017			2	
TETIRPASVYTK	1	Unmodified	1364.73	0.72997974	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	27.421	26.874	3	0.00049889	23223	160511_QHF_FH_JSI9i_2	50.46	40.672			0.8168	0.86126	11.98	6	2	Median	0.99688	0.83902	NaN	1	0	Median	0.78697	0.95323	10.648	2	2	Median	0.91849	0.88222	17.26	2	0	Median	0.75334	0.77673	NaN	1	0	Median	394690000	228550000	166140000	61547000	34542000	27005000	151250000	89768000	61483000	131920000	70472000	61445000	49979000	33767000	16212000	49689	1240	46776	299942;299943;299944;299945;299946;299947	403019;403020;403021;403022;403023;403024;403025	403022			7	
TETLASLEDTK	1	Unmodified	1206.598	0.59796251	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	42.004	41.087	2	1.4208E-05	37292	160511_QHF_FH_JSI12i_1	106.35	61.373			0.82841	0.77487	38.709	2	2	Median	0.70602	0.58932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97203	1.0188	NaN	1	1	Median	223240000	115430000	107810000	85903000	51484000	34418000	0	0	0	0	0	0	137340000	63950000	73389000	49690	1360	46777	299948;299949	403026;403027	403026			2	
TETMTVSSLAIRK	1	Unmodified	1435.7705	0.77046434	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	1		By MS/MS			15	0								1			1			55.276	44.729	3	0.051098	22860	160513_QHF_FH_JSI10Kac_5	19.578	7.2178			1.2565	1.4516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2565	1.4516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3204200	1502300	1701900	0	0	0	3204200	1502300	1701900	0	0	0	0	0	0	49691	4719	46778	299950	403028	403028			1	
TETNTEYSK	1	Unmodified	1071.472	0.47203371	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.5142	7.177	2	0.00076946	5060	160511_QHF_FH_JSI12i_1	74.464	65.601			1.0617	1.0609	9.574	4	0	Median	1.2985	1.0508	NaN	1	0	Median	1.0269	1.2161	NaN	1	0	Median	1.0977	1.071	NaN	1	0	Median	0.91328	0.96437	NaN	1	0	Median	215200000	109320000	105880000	60951000	30977000	29974000	61747000	28835000	32912000	43487000	23941000	19546000	49017000	25569000	23448000	49692	2977	46779	299951;299952;299953;299954	403029;403030;403031;403032;403033;403034	403031			6	
TETNVYFK	1	Unmodified	1000.4866	0.48656157	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.874	29.306	2	0.038684	26324	160511_QHF_FH_JSI12i_1	48.283	30.374			0.30804	0.31196	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30804	0.31196	NaN	1	1	Median	115230000	85202000	30032000	0	0	0	0	0	0	0	0	0	115230000	85202000	30032000	49693	4914	46780	299955	403035	403035			1	
TETPIVSK	1	Unmodified	873.48075	0.48074791	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	19.222	18.725	2	0.0028954	16096	160511_QHF_FH_JSI10i_1	75.213	14.425			1.1341	1.1408	90.037	4	0	Median	1.0618	0.88404	NaN	1	0	Median	5.3241	6.2349	NaN	1	0	Median	1.2114	1.1873	NaN	1	0	Median	1.0382	1.0961	NaN	1	0	Median	658500000	291350000	367150000	163970000	78755000	85214000	92694000	14382000	78313000	187190000	82162000	105030000	214650000	116050000	98592000	49694	671	46781	299956;299957;299958;299959;299960	403036;403037;403038;403039;403040;403041;403042;403043	403041			8	
TETQAEDTEPDPGESK	1	Unmodified	1732.7275	0.72753271	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		14.853	14.726	2	5.8233E-36	12210	160511_QHF_FH_JSI11i_1	169.62	154.23			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49695	3886	46782	299961	403044	403044			1	
TETQAEDTEPDPGESKGEPR	1	Acetyl (K)	2213.956	0.9560291	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12	0					3						1		2	34.663	26.1	2;3	0.0011729	12660	160513_QHF_FH_JSI12Kac_2	56.529	52.98			0.87754	0.95101	20.496	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7299	0.8227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.055	1.0993	NaN	1	0	Median	7670500	3519500	4151000	0	0	0	1955700	1045100	910610	0	0	0	5714800	2474400	3240400	49696	3886	46783	299962;299963;299964	403045;403046;403047;403048	403047	2984		4	
TETQEKNPLPSK	2	Acetyl (K)	1412.7147	0.7147236	2004	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	yes	yes	1	0	0	1		By MS/MS	By MS/MS		12.3	0.471					2	1					1	2		35.586	26.843	2;3	0.013374	12550	160513_QHF_FH_JSI10Kac_2	61.353	35.415			0.81865	0.90089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81865	0.90089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1625900	1384200	241670	0	0	0	799320	557640	241670	826600	826600	0	0	0	0	49697	2004	46784	299965;299966;299967	403049;403050;403051	403051	2030;2033		3	
TETQEKNTLPTK	2	Acetyl (K)	1430.7253	0.72528829	2064	P63313;CON__P21752	TMSB10	Thymosin beta-10	yes	no	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	31.562	23.219	2	0.0040584	11481	160513_QHF_FH_JSI12Kac_2	67.022	50.082		+	0.59007	0.63486	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59007	0.63486	NaN	1	0	Median	3371300	2623600	747710	0	0	0	0	0	0	1052300	1052300	0	2319000	1571300	747710	49698	2064	46785	299968;299969	403052;403053	403053	2136;2137		2	
TETVEEPMEEEEAAK	1	Oxidation (M)	1736.7298	0.7298409	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.96	12			3	3					5	4	4	5	30.648	27.149	2	5.8925E-55	21990	160511_QHF_FH_JSI10i_1	189.13	171.77			1.1867	1.1253	41.361	16	1	Median	1.1563	0.93705	59.995	5	0	Median	1.5858	1.7854	2.8493	3	1	Plateau	1.2429	1.1669	15.842	4	0	Median	0.96942	1.011	11.426	4	0	Linear	867560000	403350000	464210000	530600000	229690000	300920000	36008000	14999000	21009000	127580000	50858000	76723000	173370000	107810000	65560000	49699	1057	46786	299970;299971;299972;299973;299974;299975;299976;299977;299978;299979;299980;299981;299982;299983;299984;299985;299986;299987	403054;403055;403056;403057;403058;403059;403060;403061;403062;403063;403064;403065;403066;403067;403068;403069;403070;403071;403072;403073;403074;403075;403076;403077;403078;403079;403080	403065		692	26	
TETVEEPMEEEEAAK	1	Unmodified	1720.7349	0.73492628	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	4.84	4			5	4					1	4	4	4	40.739	35.103	2	1.3597E-159	31655	160511_QHF_FH_JSI11i_1	302.27	292.58			1.112	1.1901	38.289	10	3	Median	1.1252	0.88832	NaN	1	0	Median	1.5753	1.852	21.616	3	0	Plateau	0.98343	0.96429	35.504	2	0	Median	1.0135	1.0657	46.58	4	3	Median	4715400000	2276500000	2438900000	1061800000	547230000	514590000	972900000	390160000	582740000	1485400000	733100000	752330000	1195300000	606020000	589280000	49700	1057	46786	299988;299989;299990;299991;299992;299993;299994;299995;299996;299997;299998;299999;300000	403081;403082;403083;403084;403085;403086;403087;403088;403089;403090;403091;403092;403093;403094;403095;403096;403097;403098;403099;403100;403101;403102;403103;403104;403105;403106	403083			26	
TETVEEPMEEEEAAKEEK	2	Unmodified	2106.9151	0.91507549	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	9					3				2	3	3	4	37.706	34.987	2;3	3.4721E-53	31535	160511_QHF_FH_JSI12i_1	219.01	192.86			1.3578	1.3429	31.751	12	2	Median	1.5279	1.2393	24.274	2	0	Median	1.3525	1.5677	6.6179	3	0	Plateau	1.3849	1.3253	3.4991	3	0	Plateau	0.80024	0.85602	16.352	4	2	Median	3958200000	1640300000	2317900000	769490000	270830000	498660000	1166500000	358000000	808500000	1109800000	504850000	604910000	912490000	506640000	405860000	49701	1057	46787	300001;300002;300003;300004;300005;300006;300007;300008;300009;300010;300011;300012	403107;403108;403109;403110;403111;403112;403113;403114;403115;403116;403117;403118;403119;403120;403121;403122;403123;403124;403125;403126	403112			20	
TETVEEPMEEEEAAKEEK	2	Oxidation (M)	2122.91	0.90999011	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	29.243	28.483	3	0.00022598	24147	160511_QHF_FH_JSI12i_1	67.645	58.24			1.3058	1.2785	52.525	5	2	Median	2.987	2.4264	27.494	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3058	1.2785	NaN	1	0	Median	0.8377	0.89218	10.567	2	0	Median	259010000	81556000	177450000	153310000	27569000	125750000	0	0	0	26386000	11011000	15375000	79309000	42976000	36333000	49702	1057	46787	300013;300014;300015;300016;300017	403127;403128;403129;403130	403128		692	4	
TETVEEPMEEEEAAKEEKEESDDEAAVEEEEEEK	3	Unmodified	3954.6219	0.62193233	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	55.014	54.505	4	1.2367E-236	49640	160511_QHF_FH_JSI12i_1	327.66	326.5			1.5167	1.5476	49.575	4	1	Median	NaN	NaN	NaN	0	0	Median	2.0181	2.3573	NaN	1	0	Median	1.0719	1.0611	55.253	2	1	Median	1.4522	1.5273	NaN	1	0	Median	1308300000	590130000	718200000	0	0	0	346630000	151170000	195460000	311210000	137690000	173520000	650490000	301270000	349220000	49703	1057	46788	300018;300019;300020;300021;300022	403131;403132;403133;403134;403135;403136;403137	403135			7	
TETVTSFR	0	Unmodified	939.46616	0.46616048	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	2	3	1	25.323	22.166	2	0.00014575	13987	160513_QHF_FH_JSI11Kac_4	121.62	71.579			0.94252	0.95295	10.472	7	0	Median	1.1223	0.96523	NaN	1	0	Median	0.66635	0.81803	5.8559	2	0	Median	0.94252	0.95295	6.3836	3	0	Median	0.95332	1.0753	NaN	1	0	Median	680050000	371390000	308660000	136180000	63671000	72510000	100230000	55891000	44344000	329290000	193910000	135380000	114340000	57916000	56426000	49704	2094	46789	300023;300024;300025;300026;300027;300028;300029	403138;403139;403140;403141;403142;403143;403144;403145;403146;403147;403148	403142			11	
TETVTSFRK	1	Unmodified	1067.5611	0.56112349	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		16.294	15.586	3	0.0075651	12639	160511_QHF_FH_JSI10i_3	31.391	18.038			0.98833	1.1639	38.673	3	0	Median	0.74242	0.61181	NaN	1	0	Median	0.98833	1.1639	NaN	1	0	Median	1.3587	1.2243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	122740000	62930000	59811000	21021000	13028000	7992800	54161000	30492000	23668000	47558000	19409000	28149000	0	0	0	49705	2094	46790	300030;300031;300032	403149;403150;403151;403152	403150			4	
TETYPQGQPVK	1	Unmodified	1246.6194	0.61936665	3541	Q8N5C6	SRBD1	S1 RNA-binding domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		18.433	18.244	2	0.00023892	15388	160511_QHF_FH_JSI9i_1	85.731	62.302			1.0529	1.1065	60.947	2	1	Median	NaN	NaN	NaN	0	0	Median	0.63425	0.71911	NaN	1	0	Median	1.7479	1.7026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37380000	20727000	16653000	0	0	0	23477000	14945000	8532400	13903000	5782900	8120600	0	0	0	49706	3541	46791	300033;300034;300035;300036	403153;403154;403155;403156;403157	403157			5	
TEVALAK	1	Unmodified	730.4225	0.42250475	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	5.03	10	1				2	1			4	3	4	3	20.741	18.659	2	0.0091276	16109	160511_QHF_FH_JSI9i_1	84.244	37.873			1.0244	0.98377	49.355	14	6	Median	1.2178	1.0121	67.414	4	2	Median	0.98817	1.1511	63.396	3	2	Median	0.8999	0.8854	41.299	4	1	Median	1.2581	1.3462	45.68	3	1	Plateau	7176300000	3430900000	3745400000	1761900000	849650000	912290000	1936800000	1068300000	868560000	1657300000	586920000	1070400000	1820200000	926060000	894090000	49707	1298	46792	300037;300038;300039;300040;300041;300042;300043;300044;300045;300046;300047;300048;300049;300050	403158;403159;403160;403161;403162;403163;403164;403165;403166;403167;403168;403169;403170;403171;403172;403173;403174	403172			17	
TEVETFVSLVR	0	Unmodified	1278.682	0.68196691	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	75.684	75.051	2	0.00065522	65898	160511_QHF_FH_JSI11i_2	83	55.258			0.66515	0.66342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66515	0.66342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31603000	21790000	9812700	0	0	0	0	0	0	31603000	21790000	9812700	0	0	0	49708	2547	46793	300051;300052	403175;403176	403176			2	
TEVHIRPK	1	Unmodified	978.56106	0.56106391	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	10.69	10.378	3	0.0078058	7836	160511_QHF_FH_JSI10i_3	47.657	33.655			0.81259	0.8051	21.819	4	0	Median	1.2222	0.9804	NaN	1	0	Median	0.51247	0.59925	NaN	1	0	Median	0.77748	0.72989	NaN	1	0	Median	0.84929	0.88806	NaN	1	0	Median	786580000	408340000	378240000	233680000	89862000	143820000	288390000	176110000	112270000	226660000	119640000	107020000	37850000	22718000	15132000	49709	1313	46794	300053;300054;300055;300056	403177;403178	403177			2	
TEVITSSR	0	Unmodified	891.46616	0.46616048	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.495	44.822	2	0.037165	40349	160511_QHF_FH_JSI11i_1	40.103	2.5447			1.035	1.0622	15.83	4	0	Median	1.0256	0.83435	NaN	1	0	Median	1.0359	1.2171	NaN	1	0	Median	1.0755	1.0372	NaN	1	0	Median	1.0341	1.0877	NaN	1	0	Median	1296000000	618710000	677260000	288850000	129990000	158870000	355710000	173510000	182210000	493810000	238500000	255310000	157600000	76719000	80879000	49710	3812	46795	300057;300058;300059;300060	403179	403179			1	
TEVLSEDLLQIER	0	Unmodified	1543.8094	0.80935227	3029	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	80.044	79.52	2	0.0020705	72489	160511_QHF_FH_JSI12i_1	69.815	52.342			1.4078	1.4454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4078	1.4454	NaN	1	1	Median	34211000	13378000	20833000	0	0	0	0	0	0	0	0	0	34211000	13378000	20833000	49711	3029	46796	300061	403180	403180			1	
TEVLSPNSKVESK	2	Acetyl (K)	1458.7566	0.75658842	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.5	0.5					2	2					2		2	47.232	38.115	2	0.0011445	20385	160513_QHF_FH_JSI10Kac_3	80.763	46.897			1.0538	1.1671	7.9877	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1007	1.246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0658	1.1751	10.233	2	0	Median	6042500	2857100	3185500	0	0	0	2286300	1039900	1246300	0	0	0	3756300	1817100	1939100	49712	3647	46797	300062;300063;300064;300065	403181;403182;403183;403184	403183	2907		4	
TEVNSGFFYK	1	Unmodified	1190.5608	0.56078914	1494;3835	P40227;Q92526	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.15	6.36	4	4	4				3	3	2	6	4	5	5	55.259	50.845	2	5.0785E-19	44971	160511_QHF_FH_JSI10i_2	176.38	155.48			1.0095	1.0213	18.532	19	1	Median	1.1099	0.94571	31.237	5	1	Median	0.85678	1.0332	9.5421	4	0	Median	1.0839	0.98876	8.6481	5	0	Median	1.0314	1.148	4.5182	5	0	Linear	7323900000	3650400000	3673500000	1462200000	644980000	817180000	1779800000	978630000	801210000	2326700000	1177900000	1148800000	1755100000	848850000	906290000	49713	1494;3835	46798	300066;300067;300068;300069;300070;300071;300072;300073;300074;300075;300076;300077;300078;300079;300080;300081;300082;300083;300084;300085	403185;403186;403187;403188;403189;403190;403191;403192;403193;403194;403195;403196;403197;403198;403199;403200;403201;403202;403203;403204;403205;403206;403207;403208;403209;403210;403211;403212;403213;403214;403215;403216;403217;403218;403219	403216			35	
TEVNSGFFYKSAEEREK	2	Acetyl (K)	2061.9643	0.96434936	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	1	0	0	2		By MS/MS	By MS/MS		15	0								2			1	1		64.485	53.683	3	0.00011097	29276	160513_QHF_FH_JSI11Kac_5	90.714	68.239			0.65215	0.70543	85.048	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0938	1.2872	NaN	1	0	Median	0.38884	0.38661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22949000	16629000	6320800	0	0	0	4102400	2102100	2000300	18847000	14527000	4320500	0	0	0	49714	1494	46799	300086;300087	403220	403220	1510		1	
TEVPGSVTEYK	1	Unmodified	1208.5925	0.5924832	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	2	3	39.121	34.941	2	0.0021055	31509	160511_QHF_FH_JSI12i_1	68.893	47.429			1.0118	1.1127	30.404	7	0	Median	1.3558	1.1315	NaN	1	0	Median	0.80014	0.93017	NaN	1	0	Median	1.3883	1.3363	52.034	2	0	Median	1.0118	1.1127	30.428	3	0	Median	618330000	284980000	333350000	144430000	62246000	82183000	162370000	91788000	70578000	141290000	67216000	74074000	170240000	63731000	106510000	49715	1418	46800	300088;300089;300090;300091;300092;300093;300094	403221;403222;403223;403224;403225;403226	403222			6	
TEVQGEDGQVVLIK	1	Unmodified	1513.7988	0.79878758	839	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.999	50.323	2	3.6745E-10	44717	160511_QHF_FH_JSI9i_1	151.98	113.89			1.0144	0.90881	23.144	4	0	Median	0.9689	0.79911	NaN	1	0	Median	0.57193	0.68505	NaN	1	0	Median	1.0854	1.0336	NaN	1	0	Median	1.0621	1.1331	NaN	1	0	Median	210910000	119660000	91247000	58081000	32347000	25734000	54428000	34913000	19515000	38057000	19352000	18704000	60341000	33048000	27293000	49716	839	46801	300095;300096;300097;300098	403227;403228;403229;403230;403231;403232;403233;403234	403234			8	
TEVQVFKK	2	Unmodified	977.55458	0.55458155	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	23.276	23.258	3	0.0033805	19081	160511_QHF_FH_JSI12i_3	51.854	28.426			1.2422	1.242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2422	1.242	NaN	1	0	Median	54318000	28840000	25478000	0	0	0	0	0	0	0	0	0	54318000	28840000	25478000	49717	4159	46802	300099	403235	403235			1	
TEVSLTLTNK	1	Unmodified	1104.6027	0.60265396	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.41	4	1				1				2	1	1	2	47.826	45.672	2	1.63E-14	40866	160511_QHF_FH_JSI10i_1	166.09	103.43			0.8692	0.85626	43.919	6	0	Median	0.63042	0.52962	60.111	2	0	Median	0.7105	0.8328	NaN	1	0	Median	0.89426	0.88039	NaN	1	0	Median	1.0125	1.0771	27.694	2	0	Median	536450000	311020000	225420000	103080000	68950000	34129000	141010000	83361000	57646000	128370000	61793000	66575000	163990000	96919000	67074000	49718	1600	46803	300100;300101;300102;300103;300104;300105	403236;403237;403238;403239;403240;403241;403242;403243;403244;403245	403240			10	
TEVTGDHIPTPQDLPQR	0	Unmodified	1902.9436	0.94355434	1874	P56211	ARPP19	cAMP-regulated phosphoprotein 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	51.613	50.623	3	1.0014E-05	43773	160511_QHF_FH_JSI11i_2	82.349	72.427			0.87372	0.83504	11.076	5	5	Median	0.94696	0.80927	12.794	2	2	Median	0.58405	0.70855	NaN	1	1	Median	0.89431	0.91135	NaN	1	1	Median	0.74603	0.83504	NaN	1	1	Median	345080000	191780000	153290000	90911000	51368000	39543000	57710000	33916000	23794000	126130000	65769000	60365000	70321000	40731000	29590000	49719	1874	46804	300106;300107;300108;300109;300110	403246;403247;403248;403249;403250	403249			5	
TEVVDSDGSVK	1	Unmodified	1134.5404	0.54044763	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	20.933	18.192	2	5.6015E-07	15341	160511_QHF_FH_JSI9i_1	113.93	94.14			1.0911	1.0421	28.859	6	2	Median	1.1739	0.9786	NaN	1	0	Median	1.1984	1.3662	31.863	2	1	Median	1.0142	0.99579	NaN	1	0	Median	1.1125	1.169	45.725	2	1	Median	908370000	485160000	423210000	212060000	96266000	115800000	258470000	145680000	112790000	244680000	117480000	127200000	193150000	125730000	67427000	49720	4777	46805	300111;300112;300113;300114;300115;300116	403251;403252;403253;403254;403255;403256;403257;403258	403256			8	
TEVVDSDGSVKDK	2	Acetyl (K)	1419.6729	0.67291837	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	34.754	26.155	2	0.0039568	12249	160513_QHF_FH_JSI10Kac_2	66.262	56.309			0.92721	1.0545	42.583	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0308	1.1988	NaN	1	0	Median	0.53506	0.51618	NaN	1	0	Median	0.79751	0.87569	NaN	1	0	Median	5681800	2804000	2877800	0	0	0	2212500	1041100	1171400	1330700	796750	533990	2138600	966180	1172400	49721	4777	46806	300117;300118;300119	403259;403260;403261	403260	3229		3	
TEWETAAPAVAETPDIK	1	Acetyl (Protein N-term)	1869.8996	0.89962384	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.96	7		2	1	1					2	4	2	3	81.87	79.617	2	2.4967E-17	73845	160511_QHF_FH_JSI12i_1	91.62	83.733			1.0026	0.99781	60.057	9	2	Median	0.51381	0.41708	123.36	2	1	Median	0.98059	1.1403	26.984	3	1	Median	1.0386	0.99444	NaN	1	0	Median	1.0026	1.0658	19.294	3	0	Median	4665800000	2392400000	2273400000	998180000	505620000	492560000	1478200000	734190000	744050000	1067300000	576510000	490770000	1122100000	576090000	546040000	49722	1594	46807	300120;300121;300122;300123;300124;300125;300126;300127;300128;300129;300130	403262;403263;403264;403265;403266;403267;403268;403269;403270;403271;403272;403273;403274	403268			13	
TEWLDGK	1	Unmodified	847.40758	0.40758296	2040	P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37	PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.74	6.55	7	4	1			4	3	4	4	6	6	9	6	36.047	29.735	2	0.00075137	18241	160513_QHF_FH_JSI12Kac_4	113.7	87.587			0.97165	0.97207	42.66	25	2	Median	1.2158	1.0162	52.006	6	1	Median	0.82595	0.94096	17.471	6	0	Median	0.97165	0.93608	63.17	7	1	Median	1.0096	1.0662	14.528	6	0	Median	47088000000	21575000000	25513000000	8818600000	3636700000	5181900000	13354000000	6781100000	6572900000	12173000000	5634100000	6538700000	12743000000	5523100000	7219500000	49723	2040	46808	300131;300132;300133;300134;300135;300136;300137;300138;300139;300140;300141;300142;300143;300144;300145;300146;300147;300148;300149;300150;300151;300152;300153;300154;300155;300156;300157	403275;403276;403277;403278;403279;403280;403281;403282;403283;403284;403285;403286;403287;403288;403289;403290;403291;403292;403293;403294;403295;403296;403297;403298;403299;403300;403301;403302;403303;403304;403305;403306;403307;403308;403309;403310;403311;403312;403313;403314;403315;403316;403317;403318;403319;403320;403321;403322;403323;403324;403325;403326;403327;403328;403329;403330;403331;403332;403333;403334;403335;403336	403325			62	
TEWLDGKHVVFGK	2	Unmodified	1514.7882	0.78816332	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	55.116	54.223	4	0.0003532	45693	160511_QHF_FH_JSI10i_3	53.6	48.751			0.75913	0.81497	100.27	2	1	Median	NaN	NaN	NaN	0	0	Median	0.35091	0.40107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6422	1.656	NaN	1	1	Median	122520000	63158000	59362000	0	0	0	38716000	25223000	13493000	0	0	0	83804000	37935000	45869000	49724	2040	46809	300158;300159	403337;403338	403337			2	
TEWLDGKHVVFGK	2	Acetyl (K)	1556.7987	0.798728	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.314								1	8	2	2	3	2	76.432	67.756	2;3	1.4031E-50	37603	160513_QHF_FH_JSI10Kac_6	210.95	190.67			0.59889	0.63155	57.972	9	0	Median	0.96902	0.83407	14.632	2	0	Median	1.0656	1.2553	1.2525	2	0	Median	0.3206	0.31528	5.8974	3	0	Median	0.59405	0.62291	1.9468	2	0	Median	3966200000	2575600000	1390500000	334780000	166580000	168200000	1051100000	575440000	475710000	1759500000	1300300000	459190000	820750000	533310000	287450000	49725	2040	46809	300160;300161;300162;300163;300164;300165;300166;300167;300168	403339;403340;403341;403342;403343;403344;403345;403346;403347;403348;403349;403350;403351;403352;403353	403353	2099;2100		15	
TEYDAVAEK	1	Unmodified	1024.4713	0.47130543	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	21.089	18.285	2	4.8344E-06	15879	160511_QHF_FH_JSI12i_1	117.89	82.01			0.97764	0.96825	11.588	6	0	Median	1.0099	0.83262	NaN	1	0	Median	0.76205	0.88269	NaN	1	0	Median	1.0212	1.014	13.549	2	0	Median	0.99695	1.0453	3.8124	2	0	Median	741130000	379380000	361760000	168910000	79139000	89766000	199980000	116930000	83049000	193180000	88313000	104870000	179070000	94996000	84071000	49726	4989	46810	300169;300170;300171;300172;300173;300174	403354;403355	403354			2	
TEYEEAQDAIVK	1	Unmodified	1394.6565	0.65654002	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	6					2				1	2	2	3	40.595	37.873	2	1.4809E-06	33788	160511_QHF_FH_JSI10i_1	120.77	100.78			0.61956	0.84194	29.932	8	5	Linear	0.89429	0.73139	NaN	1	0	Median	0.67442	0.78429	49.035	2	2	Median	0.7881	0.75299	42.954	2	1	Median	0.77553	0.78811	28.181	3	2	Plateau	1009300000	589770000	419480000	128740000	55820000	72915000	400960000	252890000	148060000	219540000	131990000	87550000	260020000	149060000	110960000	49727	1557	46811	300175;300176;300177;300178;300179;300180;300181;300182	403356;403357;403358;403359;403360;403361;403362;403363;403364	403362			9	
TEYFAQHEQGAAAGAADISTLDQK	1	Unmodified	2521.1721	0.1721103	4324	Q99871	HAUS7	HAUS augmin-like complex subunit 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.042	56.535	3	2.9786E-09	48962	160511_QHF_FH_JSI11i_2	92.426	88.355			0.55088	0.56918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55088	0.56918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21438000	7298200	14140000	0	0	0	0	0	0	21438000	7298200	14140000	0	0	0	49728	4324	46812	300183	403365	403365			1	
TEYLSNADER	0	Unmodified	1196.5309	0.53094558	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	23.808	20.217	2	1.8176E-09	17680	160511_QHF_FH_JSI12i_1	132.22	116.58			0.82714	0.93113	93.23	7	1	Median	1.2559	1.0394	NaN	1	0	Median	0.79437	0.91086	3.1113	2	1	Median	0.30798	0.30081	180.4	2	0	Median	0.91383	0.96426	18.782	2	0	Median	730730000	427010000	303730000	216250000	97937000	118320000	210110000	121040000	89071000	126460000	115080000	11382000	177900000	92947000	84957000	49729	2517	46813	300184;300185;300186;300187;300188;300189;300190	403366;403367;403368;403369;403370;403371;403372;403373	403368			8	
TFAAQSLVQLLSK	1	Unmodified	1404.7977	0.79766537	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.05	100.84	2	0.00081504	81808	160511_QHF_FH_JSI9i_3	78.903	60.591			1.1672	0.92731	NaN	1	1	Median	1.1672	0.92731	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29956000	16353000	13603000	29956000	16353000	13603000	0	0	0	0	0	0	0	0	0	49730	1542	46814	300191	403374	403374			1	
TFAFSFWPK	1	Unmodified	1129.5597	0.55966693	5210	Q9P2D1	CHD7	Chromodomain-helicase-DNA-binding protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	95.216	94.772	2	0.0031345	81938	160511_QHF_FH_JSI12i_3	69.423	36.583			0.97196	0.99296	25.252	4	1	Median	0.85017	0.7097	NaN	1	0	Median	0.82773	0.94367	NaN	1	0	Median	1.376	1.3041	NaN	1	1	Median	1.1112	1.0448	NaN	1	0	Median	83490000	40869000	42621000	12653000	6098000	6554900	14056000	9339200	4717100	24558000	10532000	14026000	32223000	14900000	17323000	49731	5210	46815	300192;300193;300194;300195	403375;403376;403377	403377			3	
TFAGNTPLHLAAGLGYPTLTR	0	Unmodified	2170.1535	0.15348753	2157	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			87.35	86.182	3	7.5372E-08	70649	160511_QHF_FH_JSI9i_3	90.464	81.522			1.0916	1.0767	8.7606	2	0	Median	1.2245	1.012	NaN	1	0	Median	0.97312	1.1455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38016000	17355000	20661000	21215000	9562900	11652000	16801000	7792200	9009000	0	0	0	0	0	0	49732	2157	46816	300196;300197	403378;403379	403379			2	
TFALPGIIK	1	Unmodified	958.58515	0.5851534	2287	Q0JRZ9	FCHO2	F-BAR domain only protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	78.884	78.181	2	0.00017731	67732	160511_QHF_FH_JSI12i_3	86.953	82.597			1.041	1.2376	12.82	5	0	Median	1.423	1.2376	NaN	1	0	Median	1.041	1.2872	NaN	1	0	Median	0.99402	1.0143	NaN	1	0	Median	1.1649	1.2341	17.335	2	0	Median	125940000	57743000	68192000	15096000	5766000	9329900	19823000	8987000	10836000	23290000	13688000	9602200	67726000	29303000	38424000	49733	2287	46817	300198;300199;300200;300201;300202	403380;403381;403382;403383	403383			4	
TFALPGIIKK	2	Unmodified	1086.6801	0.68011642	2287	Q0JRZ9	FCHO2	F-BAR domain only protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	64.308	63.211	3	0.01084	54463	160511_QHF_FH_JSI12i_3	43.149	35.503			0.61903	0.62466	33.225	3	3	Plateau	0.84999	0.70365	NaN	1	1	Median	1.001	1.1678	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60702	0.62466	NaN	1	1	Median	59191000	31622000	27569000	17415000	9440800	7974600	18150000	6016100	12134000	0	0	0	23625000	16165000	7460000	49734	2287	46818	300203;300204;300205	403384;403385;403386;403387	403387			4	
TFANFPSGSPVSASTLAR	0	Unmodified	1808.9057	0.90571227	2139	P98170	XIAP	E3 ubiquitin-protein ligase XIAP	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.155	70.678	2	0.0030342	58015	160511_QHF_FH_JSI9i_3	72.265	56.725			1.1401	0.96297	NaN	1	1	Median	1.1401	0.96297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10605000	5097800	5506700	10605000	5097800	5506700	0	0	0	0	0	0	0	0	0	49735	2139	46819	300206	403388	403388			1	
TFAPEEISAMVLTK	1	Unmodified	1535.7905	0.79053108	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.96	4.87	8	8	8					1	3	7	6	8	7	92.958	91.779	2;3	1.2384E-29	81814	160511_QHF_FH_JSI11i_2	208.74	181.41			1.0183	1.0031	9.2003	26	0	Median	1.0836	0.90017	11.75	6	0	Median	0.8303	0.97671	7.5261	6	0	Median	1.0293	1.0246	7.2335	8	0	Median	1.0094	1.0458	6.2656	6	0	Median	10151000000	4672900000	5478400000	1780000000	956850000	823140000	2438900000	1155100000	1283800000	2891000000	1289600000	1601400000	3041400000	1271300000	1770000000	49736	982	46820	300207;300208;300209;300210;300211;300212;300213;300214;300215;300216;300217;300218;300219;300220;300221;300222;300223;300224;300225;300226;300227;300228;300229;300230;300231;300232;300233;300234	403389;403390;403391;403392;403393;403394;403395;403396;403397;403398;403399;403400;403401;403402;403403;403404;403405;403406;403407;403408;403409;403410;403411;403412;403413;403414;403415;403416;403417;403418;403419;403420;403421;403422;403423;403424;403425;403426;403427;403428;403429;403430;403431;403432;403433;403434;403435;403436;403437;403438;403439;403440;403441;403442;403443;403444;403445;403446;403447;403448;403449;403450;403451;403452;403453;403454;403455;403456;403457;403458	403440			68	
TFAPEEISAMVLTK	1	Oxidation (M)	1551.7854	0.7854457	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	0		By MS/MS	By MS/MS		8.25	6.76	1	1						2			3	1		79.322	73.865	2	0.0017233	37478	160513_QHF_FH_JSI11Kac_5	67.022	46.152			0.67576	0.78202	27.366	4	0	Median	NaN	NaN	NaN	0	0	Median	0.63605	0.69668	24.058	3	0	Median	1.0617	1.0135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81852000	50027000	31826000	0	0	0	75276000	46877000	28399000	6576000	3149300	3426700	0	0	0	49737	982	46820	300235;300236;300237;300238	403459;403460;403461;403462;403463	403461		559	5	
TFAQDGQHQVLSMNR	0	Unmodified	1730.8159	0.8158514	4210	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			38.149	36.674	3	0.0030333	30590	160511_QHF_FH_JSI10i_3	43.914	38.254			1.0673	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0673	1.2543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25879000	11105000	14775000	0	0	0	25879000	11105000	14775000	0	0	0	0	0	0	49738	4210	46821	300239	403464	403464			1	
TFAVDETSVSGYIYHK	1	Unmodified	1815.8679	0.86792978	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	6.89	6.45		4	2						3	3	1	1	4	70.374	66.651	2;3	3.8955E-22	59183	160511_QHF_FH_JSI9i_2	148.72	136.17			1.2078	1.0873	27.496	8	0	Median	1.2757	1.0873	4.9144	2	0	Median	0.72174	0.85724	NaN	1	0	Median	1.1841	1.2054	NaN	1	0	Median	1.1084	1.1844	34.356	4	0	Median	801710000	366130000	435570000	187850000	80328000	107520000	72422000	41310000	31111000	194630000	94607000	100020000	346810000	149890000	196920000	49739	3904	46822	300240;300241;300242;300243;300244;300245;300246;300247;300248	403465;403466;403467;403468;403469;403470;403471;403472;403473;403474	403470			10	
TFAVTDELVFK	1	Unmodified	1268.6653	0.66525421	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.785	80.66	2	0.0063659	69739	160511_QHF_FH_JSI12i_2	53.751	38.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49740	450	46823	300249	403475	403475			1	
TFAYTNHTVLPEALER	0	Unmodified	1860.937	0.9370124	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.67	0.471		1	2							1	2			65.41	63.912	3	3.4871E-05	53561	160511_QHF_FH_JSI10i_3	74.12	55.287			1.361	1.5841	15.337	2	2	Median	NaN	NaN	NaN	0	0	Median	1.361	1.5841	15.337	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90225000	36239000	53986000	0	0	0	90225000	36239000	53986000	0	0	0	0	0	0	49741	855	46824	300250;300251;300252	403476;403477;403478	403477			3	
TFCNCFVGQAGQK	1	Unmodified	1515.6599	0.65986803	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	42.051	41.94	2	8.4839E-10	36945	160511_QHF_FH_JSI11i_3	112.75	97.177			0.71368	0.66419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71368	0.66419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22150000	9396700	12753000	0	0	0	0	0	0	12890000	9396700	3493400	9259500	0	9259500	49742	5495	46825	300253;300254;300255;300256	403479;403480;403481;403482	403480			4	
TFCPAHK	1	Unmodified	859.40106	0.4010578	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	1	2	3	2	8.8902	7.5365	2;3	0.004599	5716	160511_QHF_FH_JSI12i_3	53.554	44.782			1.1802	1.367	28.018	8	1	Median	2.0868	1.6657	NaN	1	1	Median	1.1802	1.367	5.2824	2	0	Median	0.98613	0.94143	9.3347	3	0	Plateau	1.4982	1.5095	7.3956	2	0	Median	4775900000	2390500000	2385400000	252630000	98452000	154180000	775050000	387740000	387320000	1672100000	1032000000	640100000	2076100000	872330000	1203800000	49743	1650	46826	300257;300258;300259;300260;300261;300262;300263;300264	403483;403484;403485;403486;403487;403488;403489	403487			7	
TFCQLILDPIFK	1	Unmodified	1493.7952	0.79522253	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.27	5.85	3	9	5						5	5	5	7	5	98.888	96.88	2;3	5.7001E-62	48104	160513_QHF_FH_JSI10Kac_6	225.31	196.58			1.1037	1.1073	26.348	22	4	Median	1.1146	0.91011	9.0079	5	3	Median	0.97242	1.1505	5.0442	5	0	Median	0.81226	0.83059	34.297	7	1	Median	1.3413	1.4313	3.6114	5	0	Median	20296000000	10189000000	10107000000	2385600000	1113900000	1271700000	4366900000	2230400000	2136500000	7694900000	4197200000	3497700000	5848600000	2647100000	3201500000	49744	1033	46827	300265;300266;300267;300268;300269;300270;300271;300272;300273;300274;300275;300276;300277;300278;300279;300280;300281;300282;300283;300284;300285;300286	403490;403491;403492;403493;403494;403495;403496;403497;403498;403499;403500;403501;403502;403503;403504;403505;403506;403507;403508;403509;403510;403511;403512;403513;403514;403515;403516;403517;403518;403519;403520;403521;403522;403523;403524;403525	403525			36	
TFCQLILDPIFKVFDAIMNFK	2	Unmodified	2559.327	0.32696015	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.83	98.107	3	0.0013924	58079	160513_QHF_FH_JSI10Kac_6	93.006	77.69			0.23255	0.27263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23255	0.27263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45631000	39912000	5719600	0	0	0	45631000	39912000	5719600	0	0	0	0	0	0	49745	1033	46828	300287	403526	403526			1	
TFDAQIVIIEHK	1	Unmodified	1412.7664	0.76636524	1069	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.84		4	2						6	3	3	3	3	66.544	62.517	2;3	1.1849E-09	33196	160513_QHF_FH_JSI9Kac_6	122.51	81.322			0.94847	0.95383	39.849	10	3	Median	1.0347	0.87007	13.92	2	1	Median	0.73108	0.87459	11.342	2	0	Median	1.4935	1.5224	44.379	3	2	Median	0.7662	1.0026	14.619	3	0	Plateau	1283400000	642460000	640910000	102300000	50895000	51403000	357980000	194870000	163110000	445040000	205000000	240040000	378050000	191700000	186350000	49746	1069	46829	300288;300289;300290;300291;300292;300293;300294;300295;300296;300297;300298;300299	403527;403528;403529;403530;403531;403532;403533;403534;403535;403536;403537;403538;403539;403540;403541	403536			15	
TFDEIASGFR	0	Unmodified	1141.5404	0.54038805	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.97	1	4						2		2	2	2	1	59.015	55.334	2	2.2527E-07	49009	160511_QHF_FH_JSI10i_2	115.86	103.03			0.95869	1.0059	38.97	7	0	Median	1.9822	1.683	55.807	2	0	Median	0.72164	0.86118	18.247	2	0	Median	0.91379	0.91686	13.109	2	0	Median	0.95869	1.0548	NaN	1	0	Median	988060000	559380000	428690000	204520000	92902000	111620000	277250000	172800000	104440000	284460000	176070000	108400000	221830000	117600000	104230000	49747	986	46830	300300;300301;300302;300303;300304;300305;300306	403542;403543;403544;403545;403546;403547;403548;403549;403550;403551	403551			10	
TFDETVSTYVPLAQQVEDFHK	1	Unmodified	2453.1751	0.17507042	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.974	89.396	3	1.1532E-05	77153	160511_QHF_FH_JSI12i_2	81.016	73.304			1.294	1.4415	12.035	4	4	Median	1.9922	1.6898	NaN	1	1	Median	1.2088	1.4877	NaN	1	1	Median	1.296	1.268	NaN	1	1	Median	1.2921	1.3968	NaN	1	1	Median	151640000	67202000	84434000	29610000	9474400	20135000	39958000	19005000	20953000	49579000	26417000	23162000	32490000	12306000	20184000	49748	5412	46831	300307;300308;300309;300310	403552;403553;403554;403555	403552			4	
TFDLEAMFEQTRR	0	Unmodified	1642.7773	0.77734063	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			84.914	83.684	3	0.01849	68789	160511_QHF_FH_JSI9i_3	32.295	26.58			0.93217	0.91201	9.527	2	0	Median	1.1998	0.97556	NaN	1	0	Median	0.72422	0.85259	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42821000	21605000	21216000	26876000	11811000	15065000	15945000	9793500	6151700	0	0	0	0	0	0	49749	5063	46832	300311;300312	403556;403557;403558	403558			3	
TFDLYANVRPCVSIEGYK	1	Unmodified	2131.0408	0.040825542	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	78.601	78.431	3	2.8143E-05	69985	160511_QHF_FH_JSI11i_3	80.609	64.667			0.98018	0.89663	10.488	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98018	0.89663	NaN	1	0	Median	1.0064	1.0146	10.869	2	2	Median	254320000	137370000	116960000	0	0	0	0	0	0	92877000	52012000	40865000	161440000	85353000	76091000	49750	1698	46833	300313;300314;300315	403559;403560;403561;403562	403560			4	
TFDPTTSYVVEDLKPNTEYAFR	1	Unmodified	2592.2384	0.23839896	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	87.041	86.493	3	8.3932E-07	76063	160511_QHF_FH_JSI11i_2	78.413	70.967			1.1167	1.1429	5.5031	5	0	Plateau	1.144	0.99721	NaN	1	0	Median	0.89137	1.0977	NaN	1	0	Median	1.1549	1.1429	NaN	1	0	Median	1.0184	1.0746	4.7902	2	0	Median	165250000	84823000	80427000	24025000	12393000	11632000	31205000	16443000	14762000	47861000	20048000	27813000	62159000	35940000	26219000	49751	2390	46834	300316;300317;300318;300319;300320	403563;403564;403565;403566;403567;403568;403569;403570	403567			8	
TFDPYIIIR	0	Unmodified	1136.623	0.62299547	2449	Q13601	KRR1	KRR1 small subunit processome component homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	79.945	79.03	2	2.66E-05	70331	160511_QHF_FH_JSI10i_2	119.41	95.883			0.77445	0.69062	17.432	5	3	Median	0.90281	0.77125	22.414	2	1	Median	0.49611	0.6174	NaN	1	1	Median	0.68175	0.69062	NaN	1	1	Median	0.8047	0.88074	NaN	1	0	Median	311810000	191330000	120480000	58737000	32995000	25743000	68242000	49080000	19162000	124010000	76622000	47389000	60819000	32636000	28184000	49752	2449	46835	300321;300322;300323;300324;300325	403571;403572;403573;403574	403574			4	
TFDQLTPDESK	1	Unmodified	1279.5932	0.59321148	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.76	4	3	1			3	2			2	5	3	3	41.43	37.26	2	6.8517E-46	20938	160513_QHF_FH_JSI11Kac_3	205.53	187.71			0.79218	0.83949	26.866	13	2	Median	0.72056	0.60505	28.534	2	1	Median	0.67024	0.82072	21.447	5	1	Median	0.96994	0.94429	22.244	3	0	Median	0.79218	0.83949	22.182	3	0	Plateau	11303000000	5517700000	5785800000	2263900000	1082800000	1181000000	3146200000	1707300000	1438900000	3199200000	1472500000	1726700000	2694200000	1255000000	1439200000	49753	2652	46836	300326;300327;300328;300329;300330;300331;300332;300333;300334;300335;300336;300337;300338	403575;403576;403577;403578;403579;403580;403581;403582;403583;403584;403585;403586;403587;403588;403589;403590;403591;403592;403593;403594;403595;403596;403597;403598	403584			24	
TFDQLTPEESK	1	Unmodified	1293.6089	0.60886155	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	5.91	1	3				2	3			2	2	3	2	44.098	37.454	2	6.3901E-18	33142	160511_QHF_FH_JSI9i_1	157.75	144.37			0.8293	0.89897	113.48	8	3	Median	0.32459	0.2673	223.63	2	1	Median	0.75712	0.8982	0.4255	2	1	Median	1.1172	1.1028	29.203	2	0	Median	0.41855	0.45762	118.69	2	1	Median	1466000000	615920000	850050000	1327800000	509640000	818210000	14673000	6739200	7934000	18783000	8072100	10711000	104670000	91465000	13202000	49754	388	46837	300339;300340;300341;300342;300343;300344;300345;300346;300347	403599;403600;403601;403602;403603;403604;403605;403606;403607;403608	403603			10	
TFDSIVMDPK	1	Unmodified	1151.5533	0.55326092	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.617	4	6	1							3	2	3	3	55.544	54.915	2	7.3677E-13	47527	160511_QHF_FH_JSI11i_2	130.66	92.353			3.1144	2.6226	49.738	5	5	Median	3.2776	2.6226	NaN	1	1	Median	2.0422	2.397	NaN	1	1	Median	1.7987	1.765	76.165	2	2	Median	3.5677	3.8097	NaN	1	1	Median	1546100000	461980000	1084100000	252010000	58461000	193550000	357910000	119270000	238640000	583700000	204440000	379260000	352440000	79804000	272630000	49755	1034	46838	300348;300349;300350;300351;300352;300353;300354;300355;300356;300357;300358	403609;403610;403611;403612;403613;403614;403615;403616;403617;403618;403619;403620	403619			12	
TFDSIVMDPKK	2	Unmodified	1279.6482	0.64822394	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.09		11	5					4		5	3	6	6	47.674	45.307	2;3	2.9542E-06	39632	160511_QHF_FH_JSI9i_2	89.805	78.879			1.2026	1.067	70.872	19	12	Median	1.2474	1.067	27.662	5	2	Median	1.8309	2.2642	216.32	2	1	Median	0.93718	0.86649	50.787	6	4	Median	1.2887	1.374	50.415	6	5	Median	2338000000	1063700000	1274300000	477390000	229920000	247470000	227960000	59323000	168630000	1123600000	544500000	579140000	509030000	229940000	279090000	49756	1034	46839	300359;300360;300361;300362;300363;300364;300365;300366;300367;300368;300369;300370;300371;300372;300373;300374;300375;300376;300377;300378	403621;403622;403623;403624;403625;403626;403627;403628;403629;403630;403631;403632;403633;403634;403635;403636;403637;403638;403639;403640;403641;403642;403643;403644	403631			24	
TFDYKIPYTTVLR	1	Acetyl (K)	1657.8716	0.87155859	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.247	75.928	2	0.00018512	42088	160513_QHF_FH_JSI11Kac_6	100.56	64.6			2.1528	2.086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1528	2.086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19102000	3140200	15962000	0	0	0	0	0	0	19102000	3140200	15962000	0	0	0	49757	2277	46840	300379	403645	403645	2370		1	
TFEAFMYLSLPLASTSK	1	Unmodified	1904.9594	0.95938732	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.964	90.244	2	0.00042029	52178	160513_QHF_FH_JSI10Kac_6	142.38	126.03			0.76664	0.91861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76664	0.91861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42705000	26741000	15964000	0	0	0	42705000	26741000	15964000	0	0	0	0	0	0	49758	1501	46841	300380	403646	403646			1	
TFEDAQK	1	Unmodified	837.38685	0.38684752	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	10.075	9.6943	2	0.037155	7556	160511_QHF_FH_JSI12i_1	48.787	29.225			1.4862	1.4529	9.926	4	0	Median	1.8254	1.5106	NaN	1	0	Median	1.1841	1.3974	NaN	1	0	Median	1.7366	1.6636	NaN	1	0	Median	1.2718	1.324	NaN	1	0	Median	676610000	272700000	403900000	167510000	58480000	109030000	192550000	87182000	105370000	149600000	60638000	88962000	166940000	66401000	100540000	49759	3563	46842	300381;300382;300383;300384	403647	403647			1	
TFEDISEK	1	Unmodified	967.44984	0.44984171	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	27.382	26.844	2	0.0022449	23871	160511_QHF_FH_JSI10i_1	81.548	56.625			1.2961	1.1965	12.365	5	0	Median	1.3894	1.1146	NaN	1	0	Median	0.90482	1.0744	NaN	1	0	Median	1.3901	1.3714	9.5251	2	0	Median	1.1343	1.1965	NaN	1	0	Median	962020000	412200000	549820000	255750000	98196000	157550000	261200000	130770000	130430000	226470000	103360000	123110000	218600000	79874000	138720000	49760	1629	46843	300385;300386;300387;300388;300389	403648;403649;403650;403651;403652	403651			5	
TFEDITR	0	Unmodified	880.42905	0.42904669	987	P11169;Q8TDB8	SLC2A3;SLC2A14	Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.72	3	2					1			1	1	2	2	29.817	27.297	2	0.011103	24570	160511_QHF_FH_JSI12i_1	63.054	45.761			0.90694	0.91838	26.209	5	2	Median	0.90694	0.75984	NaN	1	0	Median	0.67761	0.80199	NaN	1	0	Median	1.2321	1.2211	26.49	2	1	Median	0.83724	0.91838	NaN	1	1	Median	699390000	310940000	388450000	78850000	36827000	42024000	173520000	82807000	90708000	254300000	90891000	163410000	192720000	100410000	92305000	49761	987	46844	300390;300391;300392;300393;300394;300395	403653;403654;403655;403656;403657;403658	403654			6	
TFEDRMDLFSALIK	1	Unmodified	1684.8494	0.84944294	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	96.736	96.747	3	0.00016482	83872	160511_QHF_FH_JSI12i_3	93.823	74.245			0.75221	0.80249	45.99	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0102	1.8708	NaN	1	1	Median	0.9888	1.0231	42.449	2	2	Median	125400000	57689000	67715000	0	0	0	0	0	0	41253000	12905000	28349000	84150000	44784000	39366000	49762	4582	46845	300396;300397;300398	403659;403660;403661	403661			3	
TFEEAAAQLLESSVQNLFK	1	Unmodified	2124.0739	0.07389981	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.67	102.53	3	5.7563E-11	88480	160511_QHF_FH_JSI12i_2	127.22	109.06			0.75468	0.78743	75.802	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46346	0.46071	NaN	1	0	Median	1.2289	1.3458	NaN	1	1	Median	271670000	154720000	116950000	0	0	0	0	0	0	87222000	57300000	29922000	184450000	97420000	87031000	49763	5376	46846	300399;300400	403662;403663	403662			2	
TFEECQQNLMK	1	Unmodified	1426.6221	0.62208554	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.271	37.944	2	0.0012982	34128	160511_QHF_FH_JSI10i_1	64.654	47.141			1.0321	1.085	8.6451	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88064	1.0207	NaN	1	0	Median	1.2096	1.1534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61969000	29041000	32928000	0	0	0	29185000	17545000	11640000	32784000	11496000	21288000	0	0	0	49764	1685	46847	300401;300402	403664;403665;403666	403666			3	
TFEEDPAVGAIVLTGGDK	1	Unmodified	1817.9047	0.90470922	1341	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	78.915	78.421	2;3	1.3434E-183	71494	160511_QHF_FH_JSI11i_1	313.88	290.96			0.98645	0.89119	11.467	7	1	Median	1.0439	0.87142	5.0564	2	0	Median	0.73276	0.87247	3.0032	2	1	Median	0.81109	0.78698	NaN	1	0	Median	0.99349	1.0605	1.3584	2	0	Median	2435000000	1252900000	1182100000	550220000	248260000	301950000	712500000	409820000	302680000	478490000	256640000	221850000	693800000	338170000	355630000	49765	1341	46848	300403;300404;300405;300406;300407;300408;300409;300410	403667;403668;403669;403670;403671;403672;403673;403674;403675;403676;403677;403678;403679;403680;403681;403682;403683;403684;403685;403686;403687;403688;403689	403669			23	
TFEEKQGTEIDGR	1	Acetyl (K)	1550.7213	0.72126554	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		45.411	36.108	2	2.3897E-05	20280	160513_QHF_FH_JSI11Kac_3	100.55	85.874			0.31526	0.29942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31526	0.29942	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2681800	1793900	887950	0	0	0	0	0	0	2681800	1793900	887950	0	0	0	49766	1154	46849	300411	403690	403690	1021		1	
TFEESFQK	1	Unmodified	1014.4658	0.46582612	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.39	5.31	8	4	2				3	1		4	4	4	6	33.526	30.78	2	0.00016031	17676	160513_QHF_FH_JSI10Kac_4	120.46	99.902			1.0574	1.087	70.704	18	12	Median	1.5551	1.2924	72.051	4	4	Median	0.88602	1.0784	95.285	4	2	Median	1.2891	1.2891	75.52	4	2	Median	0.81304	0.89224	68.208	6	4	Median	5334500000	2784100000	2550400000	1051700000	486140000	565540000	1395100000	768580000	626500000	1730300000	915180000	815100000	1157500000	614190000	543270000	49767	1372	46850	300412;300413;300414;300415;300416;300417;300418;300419;300420;300421;300422;300423;300424;300425;300426;300427;300428;300429	403691;403692;403693;403694;403695;403696;403697;403698;403699;403700;403701;403702;403703;403704;403705;403706;403707;403708;403709;403710;403711;403712	403699			22	
TFEESFQKALR	1	Acetyl (K)	1396.6987	0.69867961	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		70.652	59.818	2	8.0835E-12	32061	160513_QHF_FH_JSI11Kac_5	145.99	127.93			0.247	0.24322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.247	0.24322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37411000	28591000	8820200	0	0	0	0	0	0	37411000	28591000	8820200	0	0	0	49768	1372	46851	300430	403713	403713	1314		1	
TFEGHDASVLK	1	Unmodified	1202.5932	0.5931519	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		28.291	27.544	2;3	0.0030245	23998	160511_QHF_FH_JSI10i_2	41.684	35.682			1.3144	1.1496	50.836	5	2	Median	0.99693	0.86737	39.844	2	1	Median	1.4869	1.7975	NaN	1	0	Median	0.83852	0.83298	65.164	2	1	Median	NaN	NaN	NaN	0	0	Median	217950000	108610000	109340000	68883000	30288000	38595000	62916000	31117000	31799000	86148000	47204000	38944000	0	0	0	49769	2304	46852	300431;300432;300433;300434;300435	403714;403715;403716;403717;403718	403718			5	
TFEGIDPK	1	Unmodified	905.44945	0.44944778	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.49	2	7	1				4			2	5	3	4	38.137	34.417	2	0.0020117	29333	160511_QHF_FH_JSI12i_2	93.262	64.75			1.6282	1.5763	77.123	13	12	Median	1.1717	0.99703	128.05	2	2	Median	0.82479	0.96123	68.743	4	4	Median	1.6506	1.6185	42.268	3	3	Median	1.3668	1.4601	93.1	4	3	Median	2402600000	1197500000	1205100000	417230000	213140000	204090000	359010000	206440000	152580000	883160000	401790000	481370000	743190000	376150000	367040000	49770	1702	46853	300436;300437;300438;300439;300440;300441;300442;300443;300444;300445;300446;300447;300448;300449	403719;403720;403721;403722;403723;403724;403725;403726;403727;403728;403729;403730;403731;403732;403733;403734;403735;403736	403723			18	
TFEGIDPKK	2	Unmodified	1033.5444	0.5444108	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	3	4	26.498	26.128	2;3	0.00015718	21585	160511_QHF_FH_JSI12i_3	88.948	63.211			1.4595	1.4288	43.357	9	6	Median	1.67	1.4288	NaN	1	0	Median	0.99481	1.2244	62.112	2	2	Median	1.3384	1.3301	12.571	2	1	Median	1.4551	1.5654	56.878	4	3	Median	722900000	270340000	452570000	21161000	7309100	13852000	67050000	32788000	34263000	79871000	20336000	59535000	554820000	209900000	344920000	49771	1702	46854	300450;300451;300452;300453;300454;300455;300456;300457;300458;300459	403737;403738;403739;403740;403741;403742;403743;403744;403745;403746;403747	403744			11	
TFEGNLTTK	1	Unmodified	1009.508	0.50802529	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	27.215	26.315	2	0.00023652	22101	160511_QHF_FH_JSI12i_2	84.498	66.65			0.94515	0.91961	13.612	4	0	Median	1.0242	0.85143	NaN	1	0	Median	0.96949	1.1639	NaN	1	0	Median	0.92142	0.93334	NaN	1	0	Median	0.81338	0.90609	NaN	1	0	Median	381820000	204470000	177350000	68720000	34786000	33934000	64828000	35452000	29376000	141630000	73266000	68366000	106640000	60964000	45675000	49772	3101	46855	300460;300461;300462;300463	403748;403749;403750;403751	403749			3	
TFEGVDPQTTSMR	0	Unmodified	1467.6664	0.6663932	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.8	5.11	3	1					1				1	3	1	43.889	43.412	2	2.4262E-09	37470	160511_QHF_FH_JSI11i_2	106.29	85.42			0.80052	0.91866	6.2241	3	3	Median	NaN	NaN	NaN	0	0	Median	0.80052	0.93184	NaN	1	1	Median	0.94395	0.91866	NaN	1	1	Median	0.78901	0.83126	NaN	1	1	Median	678890000	355470000	323410000	0	0	0	210270000	113090000	97187000	264920000	136610000	128310000	203690000	105770000	97921000	49773	1368	46856	300464;300465;300466;300467;300468	403752;403753;403754;403755;403756	403756			5	
TFEHVTSEIGAEEAEEVGVEHLLR	0	Unmodified	2680.298	0.2980391	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.601	80.48	4	3.6959E-16	69800	160511_QHF_FH_JSI12i_3	113.59	110.66			1.0419	1.0014	8.4917	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1569	1.0633	NaN	1	0	Median	0.93826	0.943	NaN	1	0	Median	178920000	84629000	94288000	0	0	0	0	0	0	90808000	35427000	55381000	88108000	49201000	38907000	49774	1748	46857	300469;300470	403757;403758;403759;403760	403760			4	
TFEINPR	0	Unmodified	875.45012	0.45011648	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.55	4	6	4				1	4	4	4	5	8	6	37.913	33.171	2	1.1805E-05	28816	160511_QHF_FH_JSI9i_2	146.21	83.492			1.2766	1.1964	23.163	20	2	Median	0.94002	0.74752	16.379	4	0	Linear	0.86189	1.013	23.924	5	0	Median	1.37	1.3117	16.912	5	2	Median	1.3635	1.4312	23.277	6	0	Median	14831000000	7470000000	7360700000	2524500000	1249500000	1275000000	3429600000	2036400000	1393200000	4839200000	2270800000	2568400000	4037400000	1913300000	2124100000	49775	1057	46858	300471;300472;300473;300474;300475;300476;300477;300478;300479;300480;300481;300482;300483;300484;300485;300486;300487;300488;300489;300490;300491;300492;300493	403761;403762;403763;403764;403765;403766;403767;403768;403769;403770;403771;403772;403773;403774;403775;403776;403777;403778;403779;403780;403781;403782;403783;403784;403785;403786;403787;403788;403789;403790;403791;403792;403793;403794;403795;403796;403797	403777			37	
TFEIPVIK	1	Unmodified	945.55352	0.55351892	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	74.071	73.121	2	0.0070671	64922	160511_QHF_FH_JSI10i_2	58.917	33.023			1.0504	1.0571	0.27988	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1247	1.0592	NaN	1	0	Median	0.98101	1.055	NaN	1	0	Median	29082000	13004000	16078000	0	0	0	0	0	0	16375000	6170100	10205000	12707000	6834200	5873100	49776	728	46859	300494;300495;300496	403798;403799;403800	403800			3	
TFEISASDK	1	Unmodified	996.47639	0.47639081	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			34.003	33.053	2	0.058272	29057	160511_QHF_FH_JSI10i_2	42.599	14.38			0.89193	1.0517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89193	1.0517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17664000	8878500	8785100	0	0	0	17664000	8878500	8785100	0	0	0	0	0	0	49777	5289	46860	300497	403801	403801			1	
TFEISEPVITPSQR	0	Unmodified	1602.8253	0.82533668	5115	Q9NXX6	NSMCE4A	Non-structural maintenance of chromosomes element 4 homolog A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.238	66.664	2	0.00070887	58227	160511_QHF_FH_JSI11i_2	67.153	60.025			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49778	5115	46861	300498	403802	403802			1	
TFEMSDFIVDTR	0	Unmodified	1459.6653	0.66533057	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	83.314	82.738	2	1.9896E-31	72776	160511_QHF_FH_JSI11i_2	190.57	176.8			0.97668	1.0059	10.548	6	0	Median	1.008	0.87524	NaN	1	0	Median	0.85675	1.0203	12.953	2	0	Median	1.0866	1.0596	11.378	2	0	Median	0.92088	1.0349	NaN	1	0	Median	640740000	313680000	327060000	134170000	65425000	68740000	169560000	85138000	84425000	177270000	79330000	97937000	159750000	83788000	75957000	49779	512	46862	300499;300500;300501;300502;300503;300504	403803;403804;403805;403806;403807;403808;403809;403810;403811;403812;403813;403814;403815;403816;403817	403815			15	
TFEQLHSTIGHQALEDILPFLLK	1	Unmodified	2649.4166	0.41663809	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.31	102.31	4	0.0017234	89203	160511_QHF_FH_JSI12i_3	38.933	26.378			0.79027	0.76275	15.054	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74993	0.68573	NaN	1	0	Median	0.83279	0.84843	NaN	1	0	Median	152460000	69482000	82974000	0	0	0	0	0	0	51651000	28421000	23230000	100810000	41061000	59744000	49780	3860	46863	300505;300506	403818	403818			1	
TFESLVDFSK	1	Unmodified	1171.5761	0.57610486	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.1	4	4	3					5		4	5	3	4	72.71	68.868	2	5.5995E-14	61840	160511_QHF_FH_JSI10i_2	157.96	131.85			0.87255	0.92794	16.073	16	3	Median	1.1588	0.95736	12.605	4	0	Median	0.72563	0.90033	24.394	5	2	Median	0.86602	0.8864	15.892	3	0	Median	0.86924	0.96301	11.984	4	1	Median	2271300000	1173400000	1097900000	356150000	164740000	191410000	601410000	320060000	281350000	725670000	386380000	339290000	588040000	302230000	285810000	49781	2770	46864	300507;300508;300509;300510;300511;300512;300513;300514;300515;300516;300517;300518;300519;300520;300521;300522	403819;403820;403821;403822;403823;403824;403825;403826;403827;403828;403829;403830;403831;403832;403833;403834;403835;403836;403837;403838;403839;403840;403841;403842;403843;403844;403845	403841			27	
TFESSQIESVK	1	Unmodified	1253.6139	0.61394692	2940	Q5T200	ZC3H13	Zinc finger CCCH domain-containing protein 13	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.602	37.004	2	0.0097813	33547	160511_QHF_FH_JSI12i_1	48.091	28.997			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49782	2940	46865	300523	403846	403846			1	
TFESSQIESVKR	1	Unmodified	1409.7151	0.71505795	2940	Q5T200	ZC3H13	Zinc finger CCCH domain-containing protein 13	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				36.281	34.824	3	0.024538	28396	160511_QHF_FH_JSI9i_3	30.331	16.368			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49783	2940	46866	300524	403847	403847			1	
TFEVCDLPVR	0	Unmodified	1234.6016	0.6016081	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	64.394	63.66	2	1.562E-09	54697	160511_QHF_FH_JSI12i_2	133.57	127.27			1.1257	1.1423	25.322	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.5799	1.7918	NaN	1	0	Median	1.1257	1.1423	NaN	1	0	Median	1.0407	1.1702	NaN	1	0	Median	210950000	111060000	99885000	0	0	0	31112000	16457000	14655000	110720000	58336000	52382000	69118000	36270000	32847000	49784	1438	46867	300525;300526;300527;300528	403848;403849;403850;403851	403848			3	
TFEVNVLAHFWTTK	1	Unmodified	1691.8671	0.86714192	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3		1	1	2	90.984	85.971	3	9.4211E-05	84434	160511_QHF_FH_JSI12i_3	75.462	68.26			0.62874	0.73699	23.609	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.62276	0.73699	NaN	1	1	Median	0.99163	0.93803	NaN	1	1	Median	1.1898	1.1817	NaN	1	0	Median	221960000	129060000	92903000	0	0	0	120270000	79953000	40322000	74953000	35850000	39103000	26732000	13254000	13479000	49785	3602	46868	300529;300530;300531;300532	403852;403853;403854;403855;403856	403853			5	
TFEVPEENTAETITR	0	Unmodified	1735.8265	0.8264589	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	59.424	58.775	2	1.6339E-06	53108	160511_QHF_FH_JSI10i_1	149.23	106.14			1.0796	0.97013	13.092	4	3	Median	1.199	0.98647	NaN	1	1	Median	0.81664	0.95406	NaN	1	1	Median	0.97213	0.91513	NaN	1	1	Median	1.2023	1.2272	NaN	1	0	Median	228020000	105860000	122160000	43544000	17042000	26501000	51758000	25321000	26436000	66681000	35252000	31429000	66040000	28248000	37792000	49786	752	46869	300533;300534;300535;300536;300537	403857;403858;403859;403860;403861	403860			5	
TFEVTPIR	0	Unmodified	961.52328	0.52328142	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		2	2	2	2	50.084	46.395	2	2.2498E-07	39778	160511_QHF_FH_JSI12i_2	154.31	113.36			1.0387	1.0621	7.2667	7	1	Median	1.229	1.037	3.3892	2	0	Median	0.85709	1.0157	1.7389	2	1	Median	1.2279	1.2369	NaN	1	0	Median	1.0331	1.0929	3.1385	2	0	Median	1017600000	486140000	531460000	174050000	80220000	93833000	247780000	136740000	111040000	340200000	152230000	187960000	255580000	116960000	138620000	49787	2571	46870	300538;300539;300540;300541;300542;300543;300544;300545	403862;403863;403864;403865;403866;403867;403868;403869;403870;403871;403872	403864			11	
TFFEELAVEDK	1	Unmodified	1326.6343	0.63434802	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.535	1	5	1							1	2	2	2	70.285	69.459	2	2.2889E-07	61351	160511_QHF_FH_JSI9i_2	121.9	98.579			0.97066	0.99522	25.561	6	3	Median	1.0547	0.9063	NaN	1	0	Median	0.81929	1.0234	20.201	2	2	Median	1.2876	1.2764	NaN	1	0	Median	0.7725	0.82992	38.922	2	1	Median	767710000	381500000	386200000	109790000	60666000	49126000	202880000	104940000	97937000	205120000	90167000	114950000	249920000	125730000	124190000	49788	3634	46871	300546;300547;300548;300549;300550;300551;300552	403873;403874;403875;403876;403877;403878;403879;403880;403881	403878			8	
TFFHLSALK	1	Unmodified	1062.5862	0.58621603	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0	By MS/MS				3	0			1							1				61.476	59.961	3	0.0037055	49243	160511_QHF_FH_JSI9i_3	46.819	25.371			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49789	5221	46872	300553	403882	403882			1	
TFFHQENVR	0	Unmodified	1176.5676	0.56760585	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							2	1			24.963	23.645	2;3	2.6299E-05	19516	160511_QHF_FH_JSI10i_3	92.732	82.208			1.6689	1.3848	60.699	3	1	Median	1.4722	1.2027	19.935	2	1	Median	2.8203	3.3441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213950000	86285000	127660000	119420000	50881000	68540000	94526000	35404000	59122000	0	0	0	0	0	0	49790	4621	46873	300554;300555;300556	403883;403884;403885	403884			3	
TFFILHDINSDGVLDEQELEALFTK	1	Unmodified	2893.4386	0.43855533	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	97.346	89.764	3	1.3423E-110	48219	160513_QHF_FH_JSI12Kac_6	234.3	217.37			0.80122	0.90291	2.8895	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77669	0.92155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82653	0.88465	NaN	1	0	Median	250410000	157280000	93133000	0	0	0	163970000	112850000	51118000	0	0	0	86439000	44424000	42015000	49791	2195	46874	300557;300558	403886;403887	403886			2	
TFFLEALR	0	Unmodified	995.54402	0.54401687	4638	Q9H0R4	HDHD2	Haloacid dehalogenase-like hydrolase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.465	79.74	2	0.0011286	71043	160511_QHF_FH_JSI11i_3	101.54	77.339			1.0056	1.0275	14.36	4	0	Median	1.4094	1.1301	NaN	1	0	Median	0.83424	0.93427	NaN	1	0	Median	1.1881	1.1411	NaN	1	0	Median	0.85112	0.85363	NaN	1	0	Median	171560000	81620000	89941000	30939000	13762000	17177000	30906000	18385000	12521000	55083000	20770000	34313000	54634000	28704000	25930000	49792	4638	46875	300559;300560;300561;300562	403888;403889;403890;403891;403892;403893;403894	403889			7	
TFFPEYTHQLFGDDETAFGYK	1	Unmodified	2512.1223	0.12230657	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	95.937	95.783	2;3	9.3391E-86	82791	160511_QHF_FH_JSI12i_3	243.44	235.55			0.62177	0.72779	39.273	7	4	Median	0.43716	0.367	NaN	1	1	Median	0.44309	0.53342	33.6	3	2	Plateau	0.70387	0.65812	38.051	2	1	Median	1.0052	1.035	NaN	1	0	Median	1443300000	873970000	569310000	74951000	44810000	30142000	170250000	106320000	63934000	697530000	450940000	246590000	500540000	271900000	228640000	49793	220	46876	300563;300564;300565;300566;300567;300568;300569;300570	403895;403896;403897;403898;403899;403900;403901;403902;403903;403904;403905;403906;403907;403908	403906			14	
TFFPEYTHQLFGDDETAFGYKGLK	2	Acetyl (K)	2852.3334	0.33336197	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		90.381	81.032	3	4.677E-48	45388	160513_QHF_FH_JSI11Kac_6	226.56	208.06			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44701000	44701000	0	0	0	0	0	0	0	44701000	44701000	0	0	0	0	49794	220	46877	300571	403909	403909	120		1	
TFFSFPAVVAPFK	1	Unmodified	1456.7755	0.77547336	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	3	4	5	3	99.713	97.417	2;3	1.5312E-66	84183	160511_QHF_FH_JSI10i_3	231.38	220.86			0.91641	0.93206	13.08	15	2	Median	1.2492	1.0436	8.1951	3	0	Median	0.85449	0.97541	7.0812	4	0	Median	0.90039	0.85589	10.746	5	2	Median	1.0456	1.0513	10.344	3	0	Plateau	17929000000	9072300000	8856400000	3215700000	1444900000	1770800000	3915700000	2084200000	1831500000	5352800000	2942800000	2410000000	5444500000	2600400000	2844100000	49795	1519	46878	300572;300573;300574;300575;300576;300577;300578;300579;300580;300581;300582;300583;300584;300585;300586	403910;403911;403912;403913;403914;403915;403916;403917;403918;403919;403920;403921;403922;403923;403924;403925;403926	403911			17	
TFGCGSAIASSSLATEWVK	1	Unmodified	1970.9408	0.94077715	4661	Q9H1K1	ISCU	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.942	81.942	2	3.0534E-32	73180	160511_QHF_FH_JSI11i_3	185.87	177.36			1.3891	1.3251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3891	1.3251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26071000	12297000	13774000	0	0	0	0	0	0	26071000	12297000	13774000	0	0	0	49796	4661	46879	300587	403927;403928;403929	403928			3	
TFGENYVQELLEK	1	Unmodified	1568.7722	0.77223848	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	92.334	92.291	2	0.0058403	80159	160511_QHF_FH_JSI12i_3	77.597	65.383			1.4226	1.4976	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4226	1.4976	NaN	1	0	Median	74593000	31201000	43391000	0	0	0	0	0	0	0	0	0	74593000	31201000	43391000	49797	621	46880	300588	403930	403930			0	
TFGETHPFTK	1	Unmodified	1163.5611	0.56112349	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		2	6						4	2	2	4	4	30.703	27.325	2;3	7.8208E-06	22580	160511_QHF_FH_JSI12i_3	83.045	78.151			0.99059	0.94642	30.187	12	1	Median	1.3963	1.1663	30.295	2	0	Median	1.0488	1.2294	36.244	2	0	Median	1.0831	1.0226	42.276	4	1	Median	0.80999	0.88162	13.787	4	0	Median	3121300000	1180100000	1941200000	68322000	26084000	42238000	160480000	74505000	85974000	1090400000	459940000	630430000	1802200000	619590000	1182600000	49798	943	46881	300589;300590;300591;300592;300593;300594;300595;300596;300597;300598;300599;300600	403931;403932;403933;403934;403935;403936;403937;403938;403939;403940;403941;403942;403943;403944;403945;403946;403947	403944			17	
TFGHNTMDAVPR	0	Unmodified	1344.6245	0.62446881	1840	P55011	SLC12A2	Solute carrier family 12 member 2	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	30.219	29.747	3	9.9874E-05	25014	160511_QHF_FH_JSI12i_3	70.622	56.364			1.1321	1.266	17.592	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1017	1.266	NaN	1	0	Median	1.1321	1.0522	NaN	1	0	Median	1.4947	1.4956	NaN	1	0	Median	109100000	45459000	63638000	0	0	0	13298000	7540000	5757800	53604000	21296000	32308000	42195000	16623000	25572000	49799	1840	46882	300601;300602;300603	403948	403948			1	
TFGIWTLLSSVIR	0	Unmodified	1491.8449	0.84494991	5377	Q9UKR5	C14orf1	Probable ergosterol biosynthetic protein 28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	99.881	91.989	2;3	1.4768E-50	55187	160513_QHF_FH_JSI10Kac_6	207.29	180.4			1.0731	1.0293	22.486	5	0	Median	1.2272	1.0293	NaN	1	0	Median	0.67227	0.79927	24.141	2	0	Median	1.2657	1.2007	NaN	1	0	Median	1.0731	1.1178	NaN	1	0	Median	899780000	477170000	422610000	190400000	83689000	106710000	541990000	320000000	221990000	131610000	60015000	71600000	35775000	13463000	22311000	49800	5377	46883	300604;300605;300606;300607;300608	403949;403950;403951;403952;403953;403954	403952			6	
TFGKAAGPSLSHTSGGTQSK	2	Acetyl (K)	1959.965	0.96501806	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	40.796	31.822	3	2.5679E-06	17764	160513_QHF_FH_JSI10Kac_6	81.016	71.267			0.98271	1.106	11.752	2	0	Median	NaN	NaN	NaN	0	0	Median	1.009	1.2019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95711	1.0178	NaN	1	0	Median	14975000	7233600	7741100	0	0	0	8221700	4080700	4141000	0	0	0	6753000	3152900	3600100	49801	1293	46884	300609;300610	403955;403956	403956	1221		2	
TFGMAEEYHR	0	Unmodified	1239.5343	0.53425682	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	2	2	28.943	28.735	2;3	8.3349E-09	24726	160511_QHF_FH_JSI11i_3	125.66	122.23			1.0386	0.97423	18.992	5	0	Median	NaN	NaN	NaN	0	0	Median	0.59915	0.73348	NaN	1	0	Median	0.97125	0.91756	8.4761	2	0	Median	1.1318	1.1332	7.5718	2	0	Median	357030000	182210000	174820000	0	0	0	31833000	18693000	13140000	164100000	82011000	82093000	161090000	81508000	79584000	49802	3503	46885	300611;300612;300613;300614;300615	403957;403958;403959;403960;403961;403962;403963	403959			7	
TFGPYFLMSFFFK	1	Unmodified	1630.7894	0.78940887	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	101.22	91.909	2	0.0071107	53173	160513_QHF_FH_JSI9Kac_6	64.64	40.297			1.0737	1.0497	11.155	2	2	Median	1.1142	0.97009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0348	1.1359	NaN	1	1	Median	44533000	21975000	22559000	35176000	15546000	19630000	0	0	0	0	0	0	9357600	6428500	2929100	49803	1403	46886	300616;300617	403964;403965	403964			2	
TFGQKPVK	2	Unmodified	903.5178	0.51780212	2310	Q12824	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	10.268	10.018	2;3	0.0066818	7664	160511_QHF_FH_JSI10i_3	44.349	29.683			1.8253	1.726	51.561	5	3	Median	4.0115	3.203	NaN	1	1	Median	0.8309	0.96988	NaN	1	0	Median	1.338	1.2538	45.196	2	1	Median	1.8253	1.8017	NaN	1	1	Median	803850000	345610000	458250000	158330000	50627000	107700000	232120000	130030000	102090000	192460000	71051000	121410000	220950000	93901000	127050000	49804	2310	46887	300618;300619;300620;300621;300622	403966;403967;403968;403969;403970;403971	403968			6	
TFGSSLPVK	1	Unmodified	934.51238	0.51238239	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	41.658	40.528	2	0.0046155	34604	160511_QHF_FH_JSI12i_2	56.659	26.047			1.0181	1.2593	10.454	3	2	Plateau	1.4313	1.2593	NaN	1	1	Median	1.1442	1.4043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0181	1.1394	NaN	1	0	Median	380650000	184870000	195780000	127200000	53477000	73720000	135200000	71567000	63633000	0	0	0	118250000	59822000	58426000	49805	3765	46888	300623;300624;300625	403972;403973;403974	403972			3	
TFGTAIVINPEK	1	Unmodified	1288.7027	0.70270235	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.41	3	4	4				3	4	2	4	6	4	6	65.003	60.867	2	2.8227E-23	53989	160511_QHF_FH_JSI10i_2	180.88	167.79			0.94907	0.95253	17.354	17	5	Median	1.1153	0.93992	23.569	4	1	Median	0.84076	0.96313	20.821	5	2	Median	0.97277	0.94551	12.688	4	1	Median	0.90375	1.0021	14.727	4	1	Median	1306900000	697130000	609790000	200050000	95171000	104880000	285680000	176770000	108910000	449550000	243730000	205810000	371650000	181460000	190190000	49806	2456	46889	300626;300627;300628;300629;300630;300631;300632;300633;300634;300635;300636;300637;300638;300639;300640;300641;300642;300643;300644;300645	403975;403976;403977;403978;403979;403980;403981;403982;403983;403984;403985;403986;403987;403988;403989;403990;403991;403992;403993;403994;403995;403996;403997;403998;403999;404000;404001;404002;404003	403997			29	
TFGTFSSTK	1	Unmodified	974.47091	0.4709115	2372	Q13214	SEMA3B	Semaphorin-3B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	29.77	29.717	2	0.0027843	24989	160511_QHF_FH_JSI12i_3	62.823	41.523			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49807	2372	46890	300646	404004	404004			1	
TFGYFPK	1	Unmodified	858.42759	0.42759012	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	48.387	47.784	2	0.042042	40867	160511_QHF_FH_JSI12i_3	46.37	29.444			1.5573	1.5911	16.893	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0059	1.1505	NaN	1	0	Median	1.5722	1.4687	NaN	1	0	Median	1.5573	1.5911	NaN	1	0	Median	142900000	56186000	86717000	0	0	0	23696000	11249000	12448000	50587000	18155000	32432000	68620000	26783000	41837000	49808	2899	46891	300647;300648;300649	404005	404005			1	
TFGYNTIDVVPTYEHYANSTQPGEPR	0	Unmodified	2955.3675	0.36751565	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.33	0.471		2	1								1	2		76.321	75.951	3	6.2521E-36	67793	160511_QHF_FH_JSI11i_3	162.71	156.48			0.92541	1.0094	7.8697	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76725	0.9548	NaN	1	0	Median	1.1162	1.0672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85594000	42519000	43075000	0	0	0	29936000	15362000	14573000	55659000	27157000	28502000	0	0	0	49809	1841	46892	300650;300651;300652	404006;404007;404008;404009;404010;404011	404008			6	
TFGYNTIDVVPTYEHYANSTQPGEPRK	1	Unmodified	3083.4625	0.46247867	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			70.767	69.637	4	1.696E-05	58292	160511_QHF_FH_JSI10i_3	48.286	45.88			1.1112	1.3416	14.753	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1112	1.3416	14.753	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82569000	40285000	42284000	0	0	0	82569000	40285000	42284000	0	0	0	0	0	0	49810	1841	46893	300653;300654	404012;404013;404014	404013			3	
TFHDLEGNAVK	1	Unmodified	1229.6041	0.60405094	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	27.864	26.964	2;3	0.0039946	23250	160511_QHF_FH_JSI9i_2	66.435	37.348			1.607	1.8237	42.833	6	4	Median	1.3236	1.1409	NaN	1	0	Median	1.8074	2.2655	NaN	1	1	Median	1.4643	1.4781	47.058	2	2	Median	2.0263	2.2893	49.5	2	1	Median	163000000	68054000	94949000	43465000	18071000	25394000	14047000	3981400	10065000	47745000	20436000	27309000	57747000	25566000	32181000	49811	3248	46894	300655;300656;300657;300658;300659;300660;300661	404015;404016;404017;404018;404019;404020;404021	404017			7	
TFHDLEGNAVKR	1	Unmodified	1385.7052	0.70516197	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			22.501	21.237	3;4	0.0015016	17091	160511_QHF_FH_JSI9i_3	52.555	44.451			1.0847	1.0435	34.425	4	1	Median	1.7817	1.4572	19.8	2	0	Median	0.72327	0.83191	4.6111	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152440000	74298000	78144000	87941000	33354000	54587000	64501000	40944000	23557000	0	0	0	0	0	0	49812	3248	46895	300662;300663;300664;300665	404022;404023;404024;404025;404026	404024			4	
TFHFNTVEEVHSR	0	Unmodified	1601.7587	0.7586541	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			9						2	4	2	2	3	39.917	37.408	3;4	7.9174E-23	30881	160511_QHF_FH_JSI9i_3	150.11	137.48			1.099	1.111	28.901	10	2	Median	1.0604	0.88044	18.55	3	0	Median	1.2958	1.5012	41.979	2	1	Median	1.099	1.0199	6.5522	2	1	Median	1.2191	1.2216	22.317	3	0	Plateau	812810000	367950000	444860000	442410000	198810000	243600000	195010000	82298000	112710000	106210000	52208000	54005000	69180000	34630000	34551000	49813	1363	46896	300666;300667;300668;300669;300670;300671;300672;300673;300674;300675;300676	404027;404028;404029;404030;404031;404032;404033;404034;404035;404036;404037;404038;404039	404035			12	
TFHGAGLVVPVDK	1	Unmodified	1338.7296	0.7295858	5080	Q9NWY4	C4orf27	UPF0609 protein C4orf27	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	49.641	49.403	2	3.3743E-12	42293	160511_QHF_FH_JSI12i_3	117.98	106.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49814	5080	46897	300677;300678	404040;404041	404040			2	
TFHHVYSGK	1	Unmodified	1074.5247	0.52467841	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			9							3	1		5	11.919	11.303	2;3	0.00047694	9434	160511_QHF_FH_JSI9i_3	58.37	55.114			0.73166	0.64572	37.02	5	2	Median	0.73166	0.59492	6.4595	3	2	Median	0.5531	0.64572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3938	1.3998	NaN	1	0	Median	474390000	237570000	236820000	198550000	110170000	88377000	63423000	38878000	24545000	0	0	0	212420000	88520000	123900000	49815	4940	46898	300679;300680;300681;300682;300683;300684;300685;300686;300687	404042;404043;404044;404045;404046;404047;404048;404049;404050;404051	404044			10	
TFHIEEPR	0	Unmodified	1027.5087	0.50869399	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	28.244	28.229	2;3	0.0031048	23674	160511_QHF_FH_JSI12i_3	81.548	54.294			1.2466	1.158	6.499	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2032	1.1112	5.9895	2	0	Median	0.98622	1.0203	NaN	1	1	Median	171860000	77470000	94395000	0	0	0	0	0	0	134540000	56077000	78459000	37328000	21393000	15935000	49816	3943	46899	300688;300689;300690	404052;404053;404054	404054			2	
TFHIFYQLLSGAGEHLK	1	Unmodified	1960.0207	0.020682448	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	84.847	76.954	4	2.8296E-06	41989	160513_QHF_FH_JSI9Kac_6	102.08	92.554			0.82946	0.99291	8.3774	3	0	Plateau	1.1816	0.99223	NaN	1	0	Median	0.82946	0.99291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79961	0.85851	NaN	1	0	Median	742400000	350120000	392270000	129250000	50574000	78676000	523000000	250810000	272200000	0	0	0	90147000	48745000	41402000	49817	1437	46900	300691;300692;300693	404055;404056;404057;404058	404056			4	
TFHIFYYLLSGAGEHLK	1	Unmodified	1995.0254	0.025433475	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.3			19	1					70	24	27	25	14	92.265	85.636	2;3;4;5	0	45929	160513_QHF_FH_JSI10Kac_6	397.21	352.6			0.88873	0.88946	62.445	84	41	Median	1.1025	0.94849	60.261	21	11	Median	0.63821	0.75311	58.524	25	12	Median	0.9242	0.91146	70.833	24	10	Median	0.81074	0.87315	56.162	14	8	Median	217290000000	99670000000	117620000000	59365000000	23836000000	35529000000	62310000000	35299000000	27011000000	53361000000	22456000000	30906000000	42256000000	18080000000	24176000000	49818	1436	46901	300694;300695;300696;300697;300698;300699;300700;300701;300702;300703;300704;300705;300706;300707;300708;300709;300710;300711;300712;300713;300714;300715;300716;300717;300718;300719;300720;300721;300722;300723;300724;300725;300726;300727;300728;300729;300730;300731;300732;300733;300734;300735;300736;300737;300738;300739;300740;300741;300742;300743;300744;300745;300746;300747;300748;300749;300750;300751;300752;300753;300754;300755;300756;300757;300758;300759;300760;300761;300762;300763;300764;300765;300766;300767;300768;300769;300770;300771;300772;300773;300774;300775;300776;300777;300778;300779;300780;300781;300782;300783	404059;404060;404061;404062;404063;404064;404065;404066;404067;404068;404069;404070;404071;404072;404073;404074;404075;404076;404077;404078;404079;404080;404081;404082;404083;404084;404085;404086;404087;404088;404089;404090;404091;404092;404093;404094;404095;404096;404097;404098;404099;404100;404101;404102;404103;404104;404105;404106;404107;404108;404109;404110;404111;404112;404113;404114;404115;404116;404117;404118;404119;404120;404121;404122;404123;404124;404125;404126;404127;404128;404129;404130;404131;404132;404133;404134;404135;404136;404137;404138;404139;404140;404141;404142;404143;404144;404145;404146;404147;404148;404149;404150;404151;404152	404151			86	
TFHIFYYLLSGAGEHLKTDLLLEPYNK	2	Unmodified	3181.6488	0.64882287	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		88.553	79.224	5	0.056628	44234	160513_QHF_FH_JSI11Kac_6	17.076	0.099391			1.1087	1.0641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1087	1.0641	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114010000	85586000	28424000	0	0	0	0	0	0	114010000	85586000	28424000	0	0	0	49819	1436	46902	300784	404153	404153			1	
TFHNDLALVQLWTPVSPGGSAR	0	Unmodified	2365.2179	0.21787871	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		96.799	96.541	3	1.0442E-07	78752	160511_QHF_FH_JSI9i_3	84.499	76.507			0.82068	0.90253	14.262	3	0	Plateau	1.2792	1.0701	NaN	1	0	Median	0.82068	0.90253	NaN	1	0	Median	0.85151	0.80614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67985000	38076000	29909000	14474000	6577900	7896000	29729000	18108000	11621000	23782000	13390000	10392000	0	0	0	49820	950	46903	300785;300786;300787	404154;404155;404156;404157;404158;404159;404160	404158			7	
TFHTSSAAIGNQLYVFGGGER	0	Unmodified	2211.0709	0.070880117	3289	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				70.181	68.695	3	2.402E-05	56374	160511_QHF_FH_JSI9i_3	55.127	38.442			2.6368	2.1525	NaN	1	1	Median	2.6368	2.1525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20073000	6068200	14005000	20073000	6068200	14005000	0	0	0	0	0	0	0	0	0	49821	3289	46904	300788	404161	404161			1	
TFIAIKPDGVQR	1	Unmodified	1343.7561	0.75613491	1209;1079	P22392;P15531	NME2;NME1	Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.63	6.46	3	7	11				1	5	8	9	10	9	7	52.287	47.724	2;3	2.5918E-30	40141	160511_QHF_FH_JSI10i_3	181.62	159.54			0.89495	0.94852	29.808	34	4	Median	1.1666	1.0547	17.71	8	0	Median	0.83393	0.98878	32.268	10	2	Median	0.91479	0.91267	42.671	9	2	Median	0.78979	0.85096	19.767	7	0	Median	67593000000	33579000000	34014000000	17343000000	7201600000	10142000000	19186000000	10308000000	8878000000	26372000000	13458000000	12914000000	4691600000	2611100000	2080500000	49822	1209;1079	46905	300789;300790;300791;300792;300793;300794;300795;300796;300797;300798;300799;300800;300801;300802;300803;300804;300805;300806;300807;300808;300809;300810;300811;300812;300813;300814;300815;300816;300817;300818;300819;300820;300821;300822;300823	404162;404163;404164;404165;404166;404167;404168;404169;404170;404171;404172;404173;404174;404175;404176;404177;404178;404179;404180;404181;404182;404183;404184;404185;404186;404187;404188;404189;404190;404191;404192;404193;404194;404195;404196;404197;404198;404199;404200;404201;404202;404203;404204;404205;404206;404207;404208;404209;404210;404211;404212;404213;404214;404215;404216;404217;404218;404219;404220;404221;404222;404223;404224;404225;404226;404227;404228;404229;404230;404231;404232;404233;404234;404235;404236;404237;404238;404239;404240;404241;404242;404243;404244;404245;404246;404247;404248;404249;404250;404251;404252;404253;404254;404255;404256;404257;404258	404183			97	
TFIAIKPDGVQR	1	Acetyl (K)	1385.7667	0.76669959	1209;1079	P22392;P15531	NME2;NME1	Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.64							4	5	1	1	1	6	2	73.962	63.438	2;3	1.2786E-07	33823	160513_QHF_FH_JSI10Kac_4	106.29	95.461			0.34666	0.35715	56.357	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2498	NaN	1	0	Median	0.29089	0.28607	10.588	3	0	Median	0.3679	0.40441	7.7529	2	0	Median	128270000	97915000	30358000	0	0	0	4988000	2457600	2530400	109870000	85528000	24342000	13415000	9929200	3485700	49823	1209;1079	46905	300824;300825;300826;300827;300828;300829;300830;300831;300832;300833	404259;404260;404261;404262;404263;404264;404265;404266;404267	404261	922		9	
TFIFLNAK	1	Unmodified	952.5382	0.53820321	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	10.8	6.37			2						3	2	1	1	1	74.704	68.643	2	0.00091687	57579	160511_QHF_FH_JSI9i_3	107.43	84.807			1.0257	0.91603	9.0335	5	0	Median	1.0601	0.90582	1.5846	2	0	Median	0.72277	0.87441	NaN	1	0	Median	0.97735	0.93786	NaN	1	0	Median	1.0257	1.099	NaN	1	0	Median	405270000	183870000	221400000	168810000	71445000	97370000	84072000	39753000	44319000	109240000	51330000	57907000	43145000	21340000	21804000	49824	462	46906	300834;300835;300836;300837;300838	404268;404269;404270	404268			3	
TFIFSDLDYMGMSSGFYK	1	Unmodified	2107.9271	0.92710092	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.5	6.06		1							3	2	1	1		97.144	91.092	2	2.3622E-147	49008	160513_QHF_FH_JSI11Kac_6	276.97	246.54			1.4067	1.2846	13.664	4	2	Median	1.5575	1.3299	15.178	2	2	Median	0.9287	1.0955	NaN	1	0	Median	1.4326	1.3814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	288090000	130180000	157910000	125020000	50201000	74815000	78995000	45561000	33434000	84080000	34415000	49665000	0	0	0	49825	1226	46907	300839;300840;300841;300842	404271;404272;404273;404274;404275	404271			5	
TFIFSDLDYMGMSSGFYK	1	Oxidation (M)	2123.922	0.92201554	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	92.706	83.264	2	7.3227E-15	44982	160513_QHF_FH_JSI12Kac_6	128.73	115.59			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49826	1226	46907	300843	404276	404276		859	1	
TFIGHSK	1	Unmodified	788.41809	0.41808807	424	O60508	CDC40	Pre-mRNA-processing factor 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	9.51	9.132	2	0.020108	6840	160511_QHF_FH_JSI9i_3	57.281	46.975			0.91593	0.90445	26.324	3	0	Plateau	1.0207	0.84818	NaN	1	0	Median	1.1575	1.3771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89443	0.90445	NaN	1	0	Median	214580000	112390000	102190000	74472000	37162000	37309000	55353000	27356000	27997000	0	0	0	84752000	47868000	36884000	49827	424	46908	300844;300845;300846	404277;404278;404279	404278			3	
TFIGIFLIDGVTGR	0	Unmodified	1507.8399	0.83986454	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	2	2	1		96.456	88.661	2	1.4851E-05	52382	160513_QHF_FH_JSI10Kac_6	147.71	113.84			1.1896	1.1438	12.232	5	5	Median	1.2678	1.0779	8.3987	2	2	Median	1.0559	1.2582	13.693	2	2	Median	1.3577	1.3031	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1076300000	538820000	537500000	309600000	145750000	163850000	511950000	280360000	231590000	254770000	112710000	142060000	0	0	0	49828	3562	46909	300847;300848;300849;300850;300851	404280;404281;404282;404283;404284	404283			5	
TFIGPGGNMPGYLRPETAQGIFLNFK	1	Unmodified	2824.4371	0.43705596	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		91.003	83.608	3	1.0089E-13	46236	160513_QHF_FH_JSI11Kac_6	141.64	120.98			0.73712	1.1122	54.567	4	4	Linear	0.83163	0.70994	NaN	1	1	Median	0.73712	0.875	2.3662	2	2	Median	0.2903	0.27908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	941470000	547040000	394430000	155500000	73085000	82414000	668430000	401910000	266520000	117540000	72045000	45497000	0	0	0	49829	1519	46910	300852;300853;300854;300855	404285;404286;404287;404288	404285			4	
TFIGPGGNMPGYLRPETAQGIFLNFK	1	Oxidation (M)	2840.432	0.43197058	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			87.052	81.334	3	3.4544E-05	45813	160513_QHF_FH_JSI10Kac_6	92.147	74.646			0.84951	0.99526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84951	0.99526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49690000	35146000	14544000	0	0	0	49690000	35146000	14544000	0	0	0	0	0	0	49830	1519	46910	300856	404289	404289		1194	1	
TFIIGISGVTNSGK	1	Unmodified	1392.7613	0.76127986	5078	Q9NWW6	NMRK1	Nicotinamide riboside kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.984	74.19	2	0.00013633	66171	160511_QHF_FH_JSI11i_3	114.82	83.945			0.9709	0.90698	9.9597	4	0	Median	1.0256	0.86056	NaN	1	0	Median	0.91913	1.0721	NaN	1	0	Median	1.0335	0.93844	NaN	1	0	Median	0.86821	0.87658	NaN	1	0	Median	165230000	84933000	80301000	15434000	9218000	6215700	18213000	11027000	7186100	47365000	25921000	21445000	84220000	38766000	45454000	49831	5078	46911	300857;300858;300859;300860	404290;404291;404292;404293;404294	404291			5	
TFINLMTHICK	1	Unmodified	1376.6945	0.69446263	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		66.755	65.762	3	0.00043443	55180	160511_QHF_FH_JSI10i_3	60.628	54.969			1.0684	1.2157	23.323	3	0	Median	1.7274	1.4367	NaN	1	0	Median	1.0684	1.2157	NaN	1	0	Median	0.95008	0.90633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82723000	42053000	40670000	18897000	7315100	11582000	34149000	15025000	19123000	29678000	19713000	9964800	0	0	0	49832	5321	46912	300861;300862;300863	404295;404296;404297;404298	404296			4	
TFINVVK	1	Unmodified	819.48544	0.48543935	5699	Q9Y619	SLC25A15	Mitochondrial ornithine transporter 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				45.799	44.744	2	0.033424	39133	160511_QHF_FH_JSI9i_2	50.632	33.705			0.61	0.51952	NaN	1	0	Median	0.61	0.51952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24830000	12251000	12579000	24830000	12251000	12579000	0	0	0	0	0	0	0	0	0	49833	5699	46913	300864	404299	404299			1	
TFIPHLESLGK	1	Unmodified	1240.6816	0.68157298	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	3	2	61.354	60.697	2;3	1.6982E-05	53646	160511_QHF_FH_JSI11i_3	100.69	91.254			0.39244	0.39322	55.103	9	6	Plateau	1.7389	1.4538	38.965	2	1	Median	1.0681	1.255	56.349	2	1	Median	0.90993	0.47975	36.477	3	2	Plateau	0.47577	0.47644	27.147	2	2	Median	2332500000	1637000000	695510000	67227000	32688000	34539000	68839000	26401000	42438000	595330000	401490000	193840000	1601200000	1176500000	424700000	49834	4736	46914	300865;300866;300867;300868;300869;300870;300871;300872;300873	404300;404301;404302;404303;404304;404305;404306;404307;404308	404300			9	
TFIQPNMR	0	Unmodified	1005.5066	0.5065855	2241	Q06203	PPAT	Amidophosphoribosyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	39.532	38.689	2	0.0034465	32388	160511_QHF_FH_JSI10i_3	79.597	63.394			0.92313	1.0217	6.2236	2	0	Median	NaN	NaN	NaN	0	0	Median	0.881	1.0677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96726	0.97775	NaN	1	0	Median	172870000	78609000	94258000	0	0	0	88245000	37154000	51091000	0	0	0	84623000	41456000	43167000	49835	2241	46915	300874;300875	404309;404310	404309			2	
TFISYSVTFK	1	Unmodified	1191.6176	0.61757574	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	74.03	68.359	2	2.5959E-07	36094	160513_QHF_FH_JSI9Kac_6	113.22	83.41			0.90862	0.91332	81.471	6	5	Median	1.4314	1.2396	NaN	1	1	Median	0.57676	0.6729	NaN	1	1	Median	0.93364	0.87504	134.76	2	1	Median	1.2037	1.2502	107.9	2	2	Median	445440000	223050000	222380000	47099000	12850000	34250000	106070000	62816000	43252000	112790000	55749000	57039000	179480000	91638000	87843000	49836	4380	46916	300876;300877;300878;300879;300880;300881	404311;404312;404313;404314;404315;404316	404313			6	
TFITQQGIK	1	Unmodified	1034.576	0.57604528	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	6.32	3	4	2					2	2	3	2	5	3	42.848	39.37	2	1.754E-06	34473	160511_QHF_FH_JSI9i_2	130.27	80.913			0.97902	0.9891	13.272	13	0	Median	1.2277	1.0279	14.342	3	0	Median	0.74078	0.90391	9.7048	2	0	Median	0.97902	0.9891	15.459	5	0	Median	1.0407	1.1249	15.424	3	0	Plateau	1862400000	921400000	941010000	250590000	111300000	139300000	356600000	202300000	154300000	657790000	325670000	332120000	597440000	282140000	315300000	49837	4017	46917	300882;300883;300884;300885;300886;300887;300888;300889;300890;300891;300892;300893;300894	404317;404318;404319;404320;404321;404322;404323;404324;404325;404326;404327;404328;404329;404330;404331;404332;404333;404334;404335;404336;404337;404338	404328			22	
TFITSDFMTGIPATPGNEIPVEVVLK	1	Unmodified	2775.4405	0.44046958	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1.25	0.433	3	1								1	2	1		102.01	101.93	3	0.04275	92670	160511_QHF_FH_JSI11i_1	17.698	11.122			0.87493	0.93162	54.18	4	0	Median	1.6454	1.3786	NaN	1	0	Median	0.47116	0.56874	53.234	2	0	Median	1.0994	1.0473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	762500000	405560000	356940000	63725000	18660000	45065000	384700000	251330000	133370000	314070000	135570000	178500000	0	0	0	49838	1693	46918	300895;300896;300897;300898	404339	404339			1	
TFIVGAQMNVK	1	Unmodified	1206.6431	0.64307898	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3		1	2	2	63.565	58.018	2	7.6631E-08	50023	160511_QHF_FH_JSI12i_3	125.56	102.98			0.91294	0.91784	26.999	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2848	1.5264	NaN	1	0	Median	0.9948	0.97466	8.4943	2	0	Median	0.76839	0.80931	12.322	2	0	Median	378950000	208910000	170040000	0	0	0	17963000	7695100	10268000	117680000	64704000	52978000	243310000	136510000	106800000	49839	1585	46919	300899;300900;300901;300902;300903	404340;404341;404342;404343;404344;404345;404346;404347	404345			8	
TFIVGAQMNVK	1	Oxidation (M)	1222.638	0.63799361	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	3.73			1					6	3	3	2	2	3	49.893	41.859	2	0.0045365	21646	160513_QHF_FH_JSI12Kac_5	73.931	18.214			1.0906	1.0737	27.132	5	5	Median	1.0563	0.89531	21.39	2	2	Median	0.89551	1.0737	NaN	1	1	Median	1.6576	1.642	NaN	1	1	Median	1.0906	1.161	NaN	1	1	Median	36022000	16655000	19367000	8712200	4241500	4470700	2486100	1361900	1124100	4038200	1787600	2250600	20786000	9264000	11522000	49840	1585	46919	300904;300905;300906;300907;300908;300909;300910;300911;300912;300913	404348;404349;404350;404351;404352;404353;404354;404355;404356;404357	404352		1246	10	
TFIVPAIK	1	Unmodified	887.54804	0.54803961	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.026	65.465	2	0.0025035	57161	160511_QHF_FH_JSI11i_2	79.597	52.072			1.0677	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0677	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17087000	8086500	9000400	0	0	0	0	0	0	17087000	8086500	9000400	0	0	0	49841	2278	46920	300914	404358	404358			1	
TFKPAIQELKPPTYK	3	Unmodified	1759.9873	0.98725705	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		55.125	54.088	3;4	0.002263	45305	160511_QHF_FH_JSI10i_3	59.728	56.287			0.76066	0.78625	4.2308	3	3	Plateau	0.9696	0.78625	NaN	1	1	Median	0.73569	0.84307	NaN	1	1	Median	0.84554	0.78111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	278930000	159580000	119350000	39074000	22101000	16973000	126840000	79435000	47407000	113010000	58040000	54973000	0	0	0	49842	2104	46921	300915;300916;300917	404359;404360;404361;404362	404360			4	
TFLALAHK	1	Unmodified	899.52289	0.52288749	5157	Q9NZJ6	COQ3	Ubiquinone biosynthesis O-methyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	38.679	37.658	2;3	0.00034142	32759	160511_QHF_FH_JSI11i_3	78.77	67.897			0.85309	0.86949	6.6954	6	0	Median	1.0146	0.83674	3.6178	2	0	Median	0.75473	0.88309	0.38361	2	0	Median	0.96235	0.90461	NaN	1	0	Median	0.75623	0.75573	NaN	1	0	Median	329710000	173350000	156350000	99037000	47153000	51884000	79296000	44332000	34963000	59039000	25199000	33840000	92336000	56669000	35667000	49843	5157	46922	300918;300919;300920;300921;300922;300923	404363;404364;404365;404366;404367;404368;404369	404363			7	
TFLALINQVFPAEEDSKK	2	Unmodified	2049.0783	0.078256906	5420	Q9UM54	MYO6	Unconventional myosin-VI	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				98.349	98.011	3	0.045484	79473	160511_QHF_FH_JSI9i_3	26.474	18.388			1.3854	1.1863	NaN	1	1	Median	1.3854	1.1863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7266000	2330500	4935400	7266000	2330500	4935400	0	0	0	0	0	0	0	0	0	49844	5420	46923	300924	404370	404370			1	
TFLAMLNHVLNVDGFYFSTTYDLTHTLQR	0	Unmodified	3416.6863	0.68634737	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.241	89.828	4	2.6213E-178	53117	160513_QHF_FH_JSI10Kac_6	277.98	267.83			1.0672	1.0815	5.5875	2	0	Median	1.2861	1.1251	NaN	1	0	Median	0.88556	1.0396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1379300000	742300000	637010000	323890000	117340000	206540000	1055400000	624960000	430460000	0	0	0	0	0	0	49845	4991	46924	300925;300926	404371;404372;404373;404374	404373			4	
TFLAQHASL	0	Unmodified	986.51853	0.5185304	4893	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.32		5							2	2	1	1	3	49.949	45.477	2	1.6082E-05	38933	160511_QHF_FH_JSI12i_2	121.64	106.2			0.92497	0.93851	24.893	5	2	Median	0.92497	0.79418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9467	0.93851	NaN	1	0	Median	0.85122	0.9517	33.508	3	2	Median	549530000	267430000	282100000	12560000	6311000	6249500	0	0	0	205290000	86768000	118530000	331670000	174350000	157330000	49846	4893	46925	300927;300928;300929;300930;300931;300932;300933	404375;404376;404377;404378;404379;404380;404381	404375			7	
TFLASVQWK	1	Unmodified	1078.5811	0.58113065	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	1	1	1	3	70.671	64.838	2	0.0016682	56387	160511_QHF_FH_JSI12i_3	76.827	58.155			1.1361	1.1448	54.661	5	2	Median	1.3673	1.1448	NaN	1	0	Median	2.8378	3.3118	NaN	1	1	Median	1.1199	1.08	NaN	1	0	Median	0.92629	0.98687	34.535	2	1	Median	187270000	75199000	112070000	16789000	5273300	11516000	62838000	13786000	49052000	22555000	10325000	12229000	85084000	45815000	39269000	49847	163	46926	300934;300935;300936;300937;300938;300939	404382;404383;404384;404385;404386	404384			5	
TFLAVKPDGVQR	1	Unmodified	1329.7405	0.74048484	2375	Q13232	NME3	Nucleoside diphosphate kinase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.82	0.386		2	9							4	5	2		45.267	44.073	2;3	0.00075954	39616	160511_QHF_FH_JSI10i_3	71.176	67.598			0.86226	0.88473	68.722	10	5	Median	1.2894	1.0308	33.816	3	1	Median	0.25386	0.29648	82.88	5	3	Median	1.0235	0.96739	34.24	2	1	Median	NaN	NaN	NaN	0	0	Median	1148800000	641960000	506830000	273010000	110440000	162570000	572100000	369870000	202230000	303670000	161650000	142030000	0	0	0	49848	2375	46927	300940;300941;300942;300943;300944;300945;300946;300947;300948;300949;300950	404387;404388;404389;404390;404391;404392;404393;404394;404395;404396;404397;404398;404399;404400	404394			14	
TFLEFYEEK	1	Unmodified	1204.5652	0.56520582	301	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		67.298	66.562	2	0.0014249	58064	160511_QHF_FH_JSI11i_2	77.677	20.079			1.1251	1.0587	18.264	2	2	Median	1.0689	0.93044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1843	1.2047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92829000	45027000	47802000	33734000	16372000	17362000	0	0	0	59095000	28655000	30440000	0	0	0	49849	301	46928	300951;300952	404401;404402	404402			2	
TFLEYLEYEK	1	Unmodified	1333.6442	0.64418442	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.632	74.635	2	1.2416E-05	65347	160511_QHF_FH_JSI11i_2	104.05	85.736			2.5541	2.9864	102.91	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1671	1.4425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5.5899	6.1827	NaN	1	1	Median	401070000	81464000	319600000	0	0	0	182110000	53214000	128890000	0	0	0	218960000	28250000	190710000	49850	4678	46929	300953;300954;300955	404403;404404;404405	404404			3	
TFLFSATMTK	1	Unmodified	1145.5791	0.57908174	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	2	2	3	73.276	68.546	2	7.9822E-11	57033	160511_QHF_FH_JSI9i_3	143.03	132.77			0.90886	0.95127	18.735	6	2	Median	1.2437	1.0113	NaN	1	0	Median	0.67096	0.78002	23.679	2	0	Median	1.0229	0.98126	NaN	1	1	Median	0.92503	0.96323	22.055	2	1	Median	1055600000	566680000	488940000	142820000	57782000	85040000	320700000	199290000	121410000	109900000	58126000	51775000	482200000	251480000	230720000	49851	4640	46930	300956;300957;300958;300959;300960;300961;300962;300963	404406;404407;404408;404409;404410;404411;404412;404413;404414;404415	404409			10	
TFLHDPLVEWSK	1	Unmodified	1470.7507	0.75071518	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	72.497	72.35	3	0.00025111	64520	160511_QHF_FH_JSI11i_3	50.46	45.745			1.2037	1.1768	20.144	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0823	1.0206	NaN	1	0	Median	1.3388	1.357	NaN	1	0	Median	48347000	22516000	25831000	0	0	0	0	0	0	22204000	11023000	11181000	26143000	11493000	14650000	49852	2434	46931	300964;300965	404416;404417	404416			2	
TFLHPEGDHFTLISIYK	1	Unmodified	2017.0309	0.030912783	3236	Q7L7V1	DHX32	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	79.849	71.565	4	0.00090797	39917	160513_QHF_FH_JSI10Kac_6	56.339	50.886			1.0068	1.0051	18.276	4	1	Median	1.2809	1.083	NaN	1	1	Median	0.66328	0.75707	NaN	1	0	Median	1.1832	1.1369	NaN	1	0	Median	0.85668	0.93285	NaN	1	0	Median	192530000	103910000	88622000	32332000	9737700	22594000	112990000	69507000	43485000	30227000	14845000	15382000	16981000	9820300	7160300	49853	3236	46932	300966;300967;300968;300969	404418;404419;404420	404420			3	
TFLLEYHNR	0	Unmodified	1191.6037	0.60365701	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.46		2	6						5	4	5	2	2	48.798	44.602	2;3	2.0161E-06	24267	160513_QHF_FH_JSI11Kac_6	102.01	88.919			0.86035	0.97772	56.978	13	4	Median	1.2779	1.0695	87.472	4	1	Median	0.86035	0.97772	51.069	5	2	Median	0.81348	0.79272	32.176	2	1	Median	0.65735	0.68346	19.42	2	0	Median	1039600000	511520000	528110000	319300000	142700000	176600000	334560000	183160000	151400000	238060000	119260000	118800000	147710000	66405000	81309000	49854	5437	46933	300970;300971;300972;300973;300974;300975;300976;300977;300978;300979;300980;300981;300982	404421;404422;404423;404424;404425;404426;404427;404428;404429;404430;404431;404432;404433;404434;404435;404436	404425			14	
TFLLMPR	0	Unmodified	876.48914	0.48914452	3590	Q8NBI5	SLC43A3	Solute carrier family 43 member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	68.715	65.238	2	0.00070061	53696	160511_QHF_FH_JSI9i_3	129.96	113.03			0.80465	0.82927	16.298	12	1	Median	1.2562	1.0058	1.7384	3	0	Plateau	0.72189	0.81181	6.9435	3	0	Plateau	0.91475	0.8817	4.8813	3	1	Median	0.61489	0.64448	10.269	3	0	Plateau	2325300000	1269500000	1055700000	540390000	245930000	294470000	616910000	357850000	259060000	549080000	288540000	260540000	618880000	377230000	241640000	49855	3590	46934	300983;300984;300985;300986;300987;300988;300989;300990;300991;300992;300993;300994	404437;404438;404439;404440;404441;404442;404443;404444;404445;404446;404447;404448;404449;404450;404451;404452;404453;404454	404445			18	
TFLLTYVLQRPNLQK	1	Unmodified	1833.0513	0.051254295	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				85.125	76.513	3	0.032742	42123	160513_QHF_FH_JSI9Kac_6	45.014	26.875			0.83307	0.72525	NaN	1	1	Median	0.83307	0.72525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75962000	38282000	37680000	75962000	38282000	37680000	0	0	0	0	0	0	0	0	0	49856	4586	46935	300995	404455	404455			1	
TFLNNNIVYTFMTHFLLK	1	Unmodified	2215.15	0.14998206	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.257	90.829	3	3.736E-98	51858	160513_QHF_FH_JSI9Kac_6	243.09	224.79			0.89771	1.1079	19.793	4	0	Linear	1.2282	1.0735	NaN	1	0	Median	0.96021	1.1331	NaN	1	0	Median	0.83928	0.80173	NaN	1	0	Median	0.73314	0.7695	NaN	1	0	Median	1171200000	593440000	577750000	312980000	143360000	169620000	349860000	177230000	172620000	302320000	165110000	137220000	206040000	107750000	98292000	49857	3198	46936	300996;300997;300998;300999	404456;404457;404458;404459;404460;404461;404462;404463	404458			8	
TFLNYYTVWK	1	Unmodified	1333.6707	0.67067394	4465	Q9BV94	EDEM2	ER degradation-enhancing alpha-mannosidase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		81.242	74.127	2	5.757E-05	40167	160513_QHF_FH_JSI11Kac_6	90.108	59.854			0.8169	0.82017	32.511	2	2	Median	0.75885	0.65173	NaN	1	1	Median	0.8794	1.0321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85103000	50823000	34280000	39604000	23355000	16249000	45499000	27468000	18031000	0	0	0	0	0	0	49858	4465	46937	301000;301001;301002	404464;404465;404466	404464			3	
TFLPEMSEK	1	Unmodified	1080.5161	0.51614714	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.25	5.63		3						1		1	1	2		52.204	51.367	2	0.0024328	44321	160511_QHF_FH_JSI11i_2	64.711	57.482			0.77067	0.74922	6.2962	3	1	Median	0.95478	0.81698	NaN	1	1	Median	0.58965	0.72281	NaN	1	0	Median	0.77067	0.74922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	351030000	210580000	140440000	88400000	46825000	41575000	114510000	72444000	42064000	148120000	91315000	56802000	0	0	0	49859	675	46938	301003;301004;301005;301006	404467;404468;404469;404470;404471	404468			5	
TFLQTVSSEK	1	Unmodified	1138.587	0.58700389	4051	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	1	4	2	37.83	35.786	2	2.5173E-07	31094	160511_QHF_FH_JSI9i_2	114.5	103.01			0.9292	0.98689	20.293	7	0	Median	0.87499	0.74469	NaN	1	0	Median	0.95893	1.1683	NaN	1	0	Median	0.9292	0.91754	19.971	3	0	Median	1.0099	1.0861	13.552	2	0	Median	620880000	303040000	317830000	83071000	44752000	38319000	84396000	42477000	41919000	215640000	105180000	110460000	237770000	110630000	127140000	49860	4051	46939	301007;301008;301009;301010;301011;301012;301013;301014	404472;404473;404474;404475;404476;404477;404478;404479;404480;404481;404482	404475			10	
TFLRPSPEDEAIYGPNTK	1	Unmodified	2034.0058	0.0058202445	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			56.368	54.811	3	0.0015603	44868	160511_QHF_FH_JSI9i_3	49.463	43.046			1.1173	1.0844	3.7334	2	0	Median	1.3666	1.1134	NaN	1	0	Median	0.91357	1.0562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156250000	68981000	87265000	90410000	36373000	54036000	65836000	32608000	33228000	0	0	0	0	0	0	49861	5268	46940	301015;301016	404483;404484	404484			1	
TFLSSPMEVGKK	2	Unmodified	1322.6904	0.69042311	5629	Q9Y4G8	RAPGEF2	Rap guanine nucleotide exchange factor 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			48.329	46.763	3	0.0015085	39067	160511_QHF_FH_JSI10i_3	55.261	46.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49862	5629	46941	301017	404485	404485			1	
TFLTLSLQDMASR	0	Unmodified	1481.7548	0.75481428	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	3	1	88.193	87.633	2	1.6081E-22	73078	160511_QHF_FH_JSI10i_3	212.72	194.9			0.87566	0.98846	24.322	7	1	Median	1.0757	0.90321	34.922	2	0	Median	0.71223	0.84964	25.099	2	0	Median	0.85785	0.82776	38.113	2	1	Median	0.97608	0.98846	NaN	1	0	Median	462690000	235870000	226830000	104320000	46535000	57780000	104510000	61054000	43454000	157980000	80454000	77527000	95888000	47822000	48065000	49863	5448	46942	301018;301019;301020;301021;301022;301023;301024;301025	404486;404487;404488;404489;404490;404491;404492;404493;404494;404495;404496;404497;404498	404489			13	
TFLTLSLQDMASR	0	Oxidation (M)	1497.7497	0.7497289	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			3							1	2			73.617	72.162	2	0.011484	60430	160511_QHF_FH_JSI10i_3	65.5	55.547			1.0028	0.93012	15.163	3	3	Median	1.1093	0.93012	NaN	1	1	Median	0.8616	1.0069	20.444	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48567000	29741000	18826000	19273000	12160000	7112700	29293000	17580000	11713000	0	0	0	0	0	0	49864	5448	46942	301026;301027;301028	404499;404500;404501	404499		2663	3	
TFLTNDQTK	1	Unmodified	1066.5295	0.52948901	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.8	5.88		3					2			1	2	2		27.813	23.64	2	0.0013004	19813	160511_QHF_FH_JSI11i_2	78.113	66.75			0.92672	0.90869	25.555	5	5	Median	1.0481	0.92043	NaN	1	1	Median	0.57355	0.68646	39.663	2	2	Median	0.93295	0.92069	2.352	2	2	Median	NaN	NaN	NaN	0	0	Median	109400000	62759000	46645000	27449000	15477000	11972000	29568000	18397000	11171000	52386000	28885000	23501000	0	0	0	49865	1685;31;191	46943	301029;301030;301031;301032;301033	404502;404503;404504;404505;404506	404505			5	
TFLTVYWTPER	0	Unmodified	1411.7136	0.71360139	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		1	2						4	1	1	4	1	82.73	77.133	2	9.1271E-11	40622	160513_QHF_FH_JSI11Kac_6	155.06	109.92			0.91017	0.88164	11.554	6	1	Median	1.2157	1.038	NaN	1	0	Median	0.76804	0.91318	NaN	1	0	Median	0.88796	0.85118	6.4217	3	1	Plateau	0.93293	0.99832	NaN	1	0	Median	545600000	287170000	258430000	71537000	34770000	36767000	214390000	113600000	100800000	164200000	89469000	74734000	95469000	49340000	46129000	49866	834	46944	301034;301035;301036;301037;301038;301039;301040	404507;404508;404509;404510;404511;404512;404513	404509			7	
TFLTVYWTPERVELAPLPSWQPVGK	1	Unmodified	2913.5429	0.54290124	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.006	89.285	3	2.4414E-64	51457	160513_QHF_FH_JSI10Kac_6	197.33	172.69			0.75678	0.90842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75678	0.90842	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123580000	58198000	65379000	0	0	0	123580000	58198000	65379000	0	0	0	0	0	0	49867	834	46945	301041	404514	404514			1	
TFLVGER	0	Unmodified	820.4443	0.44430282	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	38.732	34.587	2	0.0016788	28909	160511_QHF_FH_JSI10i_3	117.93	74.934			0.93303	0.89304	16.601	13	0	Median	0.96276	0.81698	17.646	4	0	Median	0.74323	0.89304	11.963	3	0	Median	0.8726	0.99416	14.768	3	0	Plateau	1.1041	1.2206	7.4561	3	0	Plateau	11799000000	5818500000	5980700000	1410800000	685540000	725280000	2631500000	1470900000	1160600000	4541400000	2218700000	2322700000	3215500000	1443400000	1772100000	49868	1284	46946	301042;301043;301044;301045;301046;301047;301048;301049;301050;301051;301052;301053;301054	404515;404516;404517;404518;404519;404520;404521;404522;404523;404524;404525;404526;404527;404528;404529;404530;404531;404532;404533	404519			19	
TFLVIPELAQELHVWTDK	1	Unmodified	2138.1412	0.14119151	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.36	102.36	3	6.8916E-13	89109	160511_QHF_FH_JSI12i_3	154.12	127.64			1.0591	1.0457	0.023836	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0941	1.0455	NaN	1	0	Median	1.0252	1.0459	NaN	1	0	Median	586470000	291860000	294600000	0	0	0	0	0	0	183430000	86882000	96543000	403040000	204980000	198060000	49869	1690	46947	301055;301056	404534	404534			1	
TFLVWVNEEDHLR	0	Unmodified	1656.826	0.82600539	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.4		5	11						9	5	7	8	5	78.108	74.292	2;3	1.2576E-100	66420	160511_QHF_FH_JSI12i_3	267.39	221.23			1.0829	1.1253	31.7	22	8	Median	1.5364	1.3126	19.895	4	2	Median	0.98303	1.1813	34.9	6	1	Median	1.0777	1.0345	35.49	7	3	Median	1.0298	1.0921	15.558	5	2	Median	6254300000	2941200000	3313200000	636020000	233130000	402880000	1909100000	948910000	960180000	1702600000	790510000	912050000	2006700000	968610000	1038100000	49870	1017	46948	301057;301058;301059;301060;301061;301062;301063;301064;301065;301066;301067;301068;301069;301070;301071;301072;301073;301074;301075;301076;301077;301078;301079;301080;301081	404535;404536;404537;404538;404539;404540;404541;404542;404543;404544;404545;404546;404547;404548;404549;404550;404551;404552;404553;404554;404555;404556;404557;404558;404559;404560;404561;404562;404563;404564;404565;404566;404567;404568;404569;404570;404571;404572;404573;404574;404575;404576	404568			42	
TFLYNELYVYNTR	0	Unmodified	1694.8304	0.83042206	3694	Q8TBB5	KLHDC4	Kelch domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	2	1	81.102	74.381	2	4.5218E-20	41023	160513_QHF_FH_JSI10Kac_6	178.65	143.43			0.95217	1.1339	17.948	5	2	Median	1.3425	1.1441	NaN	1	0	Median	0.95217	1.1339	NaN	1	0	Median	1.0754	1.0849	27.674	2	1	Median	0.8078	0.86602	NaN	1	1	Median	228170000	118670000	109500000	44148000	18892000	25256000	98302000	54081000	44221000	56117000	27997000	28120000	29603000	17705000	11899000	49871	3694	46949	301082;301083;301084;301085;301086	404577;404578;404579;404580;404581;404582;404583;404584	404584			8	
TFMDHLR	0	Unmodified	918.43817	0.43817159	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.203	67.693	2	0.054124	36737	160513_QHF_FH_JSI10Kac_6	50.039	29.757			0.92032	1.107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92032	1.107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148060000	76944000	71114000	0	0	0	148060000	76944000	71114000	0	0	0	0	0	0	49872	3430	46950	301087	404585	404585			1	
TFMDMDQDSEDEK	1	Unmodified	1589.5862	0.58615355	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.82	41.176	2	1.9154E-15	36894	160511_QHF_FH_JSI10i_1	162.68	162.36			1.0896	1.0339	15.031	4	1	Median	1.0548	0.86658	NaN	1	1	Median	0.81409	0.94333	NaN	1	0	Median	1.1511	1.1332	NaN	1	0	Median	1.1255	1.1914	NaN	1	0	Median	354330000	181220000	173100000	47170000	26931000	20239000	101090000	52756000	48336000	114950000	53371000	61584000	91111000	48165000	42945000	49873	2789	46951	301088;301089;301090;301091	404586;404587;404588;404589;404590;404591;404592	404590			7	
TFMDMDQDSEEEK	1	Unmodified	1603.6018	0.60180361	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.011	41.364	2	3.3373E-15	37439	160511_QHF_FH_JSI12i_1	157.68	152.78			1.0093	1.0675	12.438	4	1	Median	1.6047	1.2921	NaN	1	1	Median	0.88723	1.0808	NaN	1	0	Median	1.0855	1.0544	NaN	1	0	Median	0.93847	0.9593	NaN	1	0	Median	235730000	117070000	118660000	19343000	8169900	11173000	65754000	36975000	28779000	82302000	37378000	44924000	68333000	34550000	33783000	49874	4988	46952	301092;301093;301094;301095	404593;404594;404595;404596;404597;404598;404599	404595			7	
TFMTHATK	1	Unmodified	935.45349	0.4534873	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	11.55	11.085	3	0.01668	8722	160511_QHF_FH_JSI10i_3	40.882	28.927			0.82115	0.93199	49.069	3	2	Median	1.8306	1.4677	NaN	1	0	Median	0.82115	0.93199	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54031	0.55059	NaN	1	1	Median	705920000	275980000	429940000	217750000	52416000	165330000	162280000	67802000	94477000	0	0	0	325900000	155760000	170130000	49875	5366	46953	301096;301097;301098	404600;404601;404602	404600			3	
TFNATDYKPIATIDVK	2	Unmodified	1795.9356	0.93561541	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.252	63.962	3	0.00012477	55181	160511_QHF_FH_JSI12i_3	71.08	60.446			1.4847	1.5178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4847	1.5178	NaN	1	0	Median	68051000	28767000	39284000	0	0	0	0	0	0	0	0	0	68051000	28767000	39284000	49876	5620	46954	301099	404603;404604	404604			2	
TFNCGVGAVLVVSK	1	Unmodified	1449.765	0.76498503	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		70.959	67.704	2	0.00068496	60377	160511_QHF_FH_JSI11i_3	89.231	53.72			0.2855	0.29717	111.8	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57366	0.65514	NaN	1	1	Median	0.14209	0.1348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39949000	32870000	7079100	0	0	0	13069000	8719500	4349500	26880000	24151000	2729600	0	0	0	49877	1205	46955	301100;301101	404605;404606	404605			2	
TFNEPGSEYFIFLLSTR	0	Unmodified	2019.9942	0.99419293	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.173	87.766	2	7.3845E-70	52033	160513_QHF_FH_JSI10Kac_6	212.7	166.82			0.76002	0.77443	7.9819	4	0	Median	0.82289	0.70938	NaN	1	0	Median	0.71817	0.84233	NaN	1	0	Median	0.75473	0.73912	NaN	1	0	Median	0.76534	0.81143	NaN	1	0	Median	471700000	261930000	209770000	107760000	59887000	47877000	172570000	96324000	76244000	88558000	54612000	33947000	102810000	51103000	51703000	49878	1737	46956	301102;301103;301104;301105	404607;404608	404608			2	
TFNIDVR	0	Unmodified	863.45012	0.45011648	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	44.205	43.233	2	0.0081025	37068	160511_QHF_FH_JSI11i_2	84.916	31.564			1.0027	1.1153	11.217	4	0	Median	1.4937	1.2825	NaN	1	0	Median	0.96616	1.1965	NaN	1	0	Median	1.0407	1.0395	NaN	1	0	Median	0.8949	1.0151	NaN	1	0	Median	137290000	64781000	72508000	27022000	9242100	17780000	29484000	17794000	11690000	45945000	23330000	22615000	34839000	14416000	20423000	49879	3790	46957	301106;301107;301108;301109	404609;404610;404611;404612	404611			4	
TFNIRHPEELSLLK	1	Unmodified	1695.9308	0.93080481	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			66.12	64.626	4	0.00048482	53909	160511_QHF_FH_JSI10i_3	58.831	41.753			2.1834	1.7534	36.066	3	0	Plateau	1.8382	1.4937	22.672	2	0	Median	0.76215	0.85359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69110000	32215000	36895000	47155000	19281000	27873000	21956000	12934000	9021700	0	0	0	0	0	0	49880	3965	46958	301110;301111;301112	404613;404614	404613			2	
TFNLEKQNHTPR	1	Acetyl (K)	1525.7637	0.76373948	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	16	0									6		3	2	1	41.71	32.409	2;3	1.4973E-12	17818	160513_QHF_FH_JSI11Kac_6	120.84	104.9			0.33918	0.34771	84.713	4	0	Median	NaN	NaN	NaN	0	0	Median	1.3906	1.6724	NaN	1	0	Median	0.29498	0.28208	6.5533	2	0	Median	0.37387	0.4092	NaN	1	0	Median	160490000	114840000	45651000	0	0	0	32066000	11883000	20182000	117550000	95032000	22519000	10877000	7927100	2949500	49881	2644	46959	301113;301114;301115;301116;301117;301118	404615;404616;404617;404618;404619	404617	2610		5	
TFNLEKQNHTPRK	2	Acetyl (K)	1653.8587	0.8587025	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		34.769	25.83	4	2.4681E-05	14534	160513_QHF_FH_JSI11Kac_6	92.039	79.247			0.68451	0.73402	121.76	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4705	1.7363	NaN	1	0	Median	0.31864	0.3103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40266000	23987000	16278000	0	0	0	18863000	7079000	11784000	21403000	16908000	4494500	0	0	0	49882	2644	46960	301119;301120	404620;404621	404620	2610		2	
TFNLIPAVGLNVHSMLK	1	Unmodified	1853.0233	0.023324985	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	99.976	99.887	2;3	1.3649E-11	86214	160511_QHF_FH_JSI12i_3	149.86	144.2			0.8571	0.80277	4.2194	4	0	Median	0.92019	0.76589	NaN	1	0	Median	0.6503	0.78654	NaN	1	0	Median	0.87135	0.81934	NaN	1	0	Median	0.84308	0.84216	NaN	1	0	Median	413950000	231020000	182930000	100450000	55776000	44675000	78921000	47051000	31870000	76611000	42760000	33850000	157970000	85433000	72535000	49883	4545	46961	301121;301122;301123;301124;301125	404622;404623;404624;404625;404626;404627;404628	404628			7	
TFNLIPAVGLNVHSMLK	1	Oxidation (M)	1869.0182	0.018239607	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	87.362	86.539	3	0.0012245	70868	160511_QHF_FH_JSI9i_3	50.053	39.677			1.1771	0.97671	30.929	3	1	Median	1.1771	0.97671	NaN	1	0	Median	0.60772	0.69999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2137	1.2986	NaN	1	1	Median	49602000	24547000	25055000	17220000	8129000	9090600	13259000	8301000	4957500	0	0	0	19124000	8116900	11007000	49884	4545	46961	301126;301127;301128	404629;404630	404629		2493	2	
TFNLPLLMLGGGGYTIR	0	Unmodified	1821.9811	0.98112582	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	3	3	96.801	88.189	2;3	2.5139E-32	50002	160513_QHF_FH_JSI9Kac_6	166.64	122.46			0.92001	1.0578	14.771	10	5	Median	1.2963	1.1065	4.0152	2	0	Median	0.89965	1.0703	4.0051	2	1	Median	0.86668	0.81625	17.82	3	2	Plateau	0.77978	0.83991	20.188	3	2	Plateau	2523500000	1336900000	1186600000	534010000	228910000	305100000	827260000	485670000	341590000	836810000	427650000	409160000	325420000	194620000	130800000	49885	3882	46962	301129;301130;301131;301132;301133;301134;301135;301136;301137;301138	404631;404632;404633;404634;404635;404636;404637;404638;404639;404640;404641;404642	404635			12	
TFNLPLLMLGGGGYTIR	0	Oxidation (M)	1837.976	0.97604044	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									3	1	2			93.64	86.846	2;3	0.0044798	50305	160513_QHF_FH_JSI10Kac_6	85.16	64.207			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49886	3882	46962	301139;301140;301141	404643;404644;404645	404644		2321	3	
TFNLTAGSLESTEPIYVYK	1	Unmodified	2132.0678	0.067751799	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.458	3	7								2	2	3	3	90.082	89.508	2;3	2.3549E-43	81595	160511_QHF_FH_JSI11i_1	167.55	146.6			0.88458	0.94543	13.048	7	0	Median	1.1441	0.98535	19.524	2	0	Median	0.83865	1.0416	NaN	1	0	Median	0.8071	0.82656	11.971	2	0	Median	0.87886	0.96204	2.4637	2	0	Median	179660000	85945000	93718000	45283000	18052000	27231000	24247000	12317000	11929000	61109000	27825000	33284000	49025000	27750000	21275000	49887	3111	46963	301142;301143;301144;301145;301146;301147;301148;301149;301150;301151	404646;404647;404648;404649;404650;404651;404652;404653;404654;404655;404656;404657;404658;404659;404660;404661;404662;404663;404664	404646			17	
TFNMDEYVGLPR	0	Unmodified	1440.6708	0.6707503	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.535	1	5	1							2	1	2	2	75.285	74.418	2;3	3.2409E-05	66064	160511_QHF_FH_JSI10i_2	122.51	114.71			1.076	1.1129	14.744	6	1	Median	1.5303	1.3093	24.52	2	1	Median	0.93851	1.1251	NaN	1	0	Median	1.076	1.0597	2.2196	2	0	Median	1.0699	1.2206	NaN	1	0	Median	639280000	304540000	334740000	104450000	44898000	59549000	152300000	77955000	74344000	245950000	110210000	135740000	136590000	71475000	65111000	49888	1596;3725	46964	301152;301153;301154;301155;301156;301157;301158	404665;404666;404667;404668;404669;404670;404671	404671			6	
TFNPGAGLPTDK	1	Unmodified	1216.6088	0.60880197	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.73	1	4	2				4			2	3	3	3	50.092	45.202	2	9.8749E-06	39039	160511_QHF_FH_JSI11i_2	123.01	115.53			0.71486	0.79187	34.079	10	4	Median	1.108	0.93556	15.261	2	0	Median	0.66486	0.78331	30.162	3	2	Median	0.85915	0.85177	15.575	2	0	Median	0.71385	0.76675	49.623	3	2	Median	1487400000	1056100000	431230000	206250000	105560000	100690000	116870000	71191000	45677000	180000000	101830000	78167000	984260000	777560000	206700000	49889	937	46965	301159;301160;301161;301162;301163;301164;301165;301166;301167;301168;301169	404672;404673;404674;404675;404676;404677;404678;404679;404680;404681;404682;404683;404684	404681			12	
TFNQVEIKPEMIGHYLGEFSITYK	2	Unmodified	2843.4204	0.42040284	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			88.993	83.273	4	2.6813E-05	47157	160513_QHF_FH_JSI10Kac_6	100.27	82.473			0.67266	0.806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67266	0.806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42705000	33664000	9041100	0	0	0	42705000	33664000	9041100	0	0	0	0	0	0	49890	2024	46966	301170	404685	404685			1	
TFNQVEIKPEMIGHYLGEFSITYKPVK	3	Unmodified	3167.6365	0.63654363	2024	P62841	RPS15	40S ribosomal protein S15	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.85	6.47			11						9	3	7	6	4	95.011	91.421	3;4;5;6	8.7597E-176	45972	160513_QHF_FH_JSI10Kac_6	274.94	257.96			0.76457	0.79627	33.658	19	7	Median	0.88964	0.77396	31.844	3	2	Median	0.67157	0.77193	33.642	7	2	Median	0.91444	0.89095	9.6439	5	1	Median	0.55872	0.56928	45.599	4	2	Median	10895000000	5982900000	4911700000	1186300000	571000000	615310000	3022900000	1752900000	1270000000	4462200000	2215900000	2246300000	2223200000	1443200000	780050000	49891	2024	46967	301171;301172;301173;301174;301175;301176;301177;301178;301179;301180;301181;301182;301183;301184;301185;301186;301187;301188;301189;301190	404686;404687;404688;404689;404690;404691;404692;404693;404694;404695;404696;404697;404698;404699;404700;404701;404702;404703;404704;404705;404706;404707;404708;404709;404710;404711;404712;404713;404714	404712			28	
TFNQVVKPR	1	Acetyl (K)	1129.6244	0.62439245	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.799							3	4	5	2	4	3	3	45.699	35.831	2	1.7266E-11	18833	160513_QHF_FH_JSI12Kac_5	159.37	143.71			0.85969	0.99868	54.132	11	2	Median	0.98007	0.83298	26.023	2	0	Median	0.84387	1.0112	83.732	3	1	Plateau	0.82357	0.81092	15.828	3	1	Median	1.0739	1.1678	32.734	3	0	Median	130520000	68893000	61631000	14822000	6493400	8328300	35752000	18436000	17317000	42834000	23415000	19419000	37117000	20550000	16567000	49892	3906	46968	301191;301192;301193;301194;301195;301196;301197;301198;301199;301200;301201;301202	404715;404716;404717;404718;404719;404720;404721;404722;404723;404724;404725;404726;404727;404728;404729;404730;404731	404726	2994		17	
TFNSELYSLNDYKPPISK	2	Unmodified	2115.0524	0.052436086	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	73.149	73.002	3	4.3093E-06	63284	160511_QHF_FH_JSI12i_3	99.021	86.358			1.2051	1.1729	16.766	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4304	1.3206	NaN	1	0	Median	1.0154	1.0418	NaN	1	1	Median	117120000	57357000	59763000	0	0	0	0	0	0	51257000	21777000	29480000	65863000	35581000	30283000	49893	5459	46969	301203;301204;301205	404732;404733;404734	404734			2	
TFNTSTGGLLLPSDTK	1	Unmodified	1650.8465	0.84646606	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.16	8	11	5				2	4		6	10	6	8	69.144	66.501	2;3	1.8388E-97	58805	160511_QHF_FH_JSI9i_2	254.1	240.51			0.9413	1.0058	19.274	27	12	Median	1.0917	0.92099	13.944	6	1	Median	0.90869	1.0907	15.199	8	5	Median	0.91212	0.88753	12.643	5	1	Median	0.95744	1.0103	26.804	8	5	Median	5832400000	2869300000	2963100000	933920000	405150000	528770000	1530700000	783560000	747130000	1457400000	710240000	747180000	1910300000	970310000	940010000	49894	1023	46970	301206;301207;301208;301209;301210;301211;301212;301213;301214;301215;301216;301217;301218;301219;301220;301221;301222;301223;301224;301225;301226;301227;301228;301229;301230;301231;301232;301233;301234;301235	404735;404736;404737;404738;404739;404740;404741;404742;404743;404744;404745;404746;404747;404748;404749;404750;404751;404752;404753;404754;404755;404756;404757;404758;404759;404760;404761;404762;404763;404764;404765;404766;404767;404768;404769;404770;404771;404772;404773;404774;404775;404776;404777;404778;404779;404780;404781;404782;404783;404784;404785	404771			51	
TFNTSTGGLLLPSDTKR	1	Unmodified	1806.9476	0.94757708	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			58.828	57.288	3	1.2707E-06	47051	160511_QHF_FH_JSI9i_3	100.04	90.083			0.94019	0.90371	141.15	2	1	Median	2.9489	2.4518	NaN	1	0	Median	0.29975	0.3331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	125380000	34814000	90562000	104550000	19002000	85549000	20825000	15812000	5012600	0	0	0	0	0	0	49895	1023	46971	301236;301237	404786;404787;404788	404788			3	
TFNVDMYEEIHRK	1	Unmodified	1680.793	0.7929907	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		1	3							1	1	1	1	51.94	51.231	4	0.0057929	45104	160511_QHF_FH_JSI11i_3	48.704	46.211			0.92273	0.91352	26.097	4	1	Median	0.8451	0.72582	NaN	1	1	Median	1.1468	1.3537	NaN	1	0	Median	0.99286	0.95209	NaN	1	0	Median	0.85755	0.87651	NaN	1	0	Median	492740000	280430000	212310000	38757000	23207000	15550000	77219000	44999000	32220000	308520000	166680000	141850000	68243000	45544000	22699000	49896	2349	46972	301238;301239;301240;301241	404789;404790;404791	404789			1	
TFPACDGSHNK	1	Unmodified	1232.5244	0.52442041	3546	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.67	0.471		2	4								1	2	3	13.326	13.082	2;3	1.1766E-05	10042	160511_QHF_FH_JSI12i_3	78.548	76.035			1.2428	1.3201	11.087	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2227	1.482	NaN	1	0	Median	1.2816	1.1977	NaN	1	0	Median	1.2428	1.3201	11.497	3	1	Median	176690000	76701000	99990000	0	0	0	25244000	13286000	11957000	53752000	26270000	27482000	97696000	37145000	60551000	49897	3546	46973	301242;301243;301244;301245;301246;301247	404792;404793;404794;404795;404796;404797;404798	404796			7	
TFPFLEGLR	0	Unmodified	1078.5811	0.58113065	1231	P23497;Q9H930	SP100;SP140L	Nuclear autoantigen Sp-100;Nuclear body protein SP140-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.95	90.225	2	0.0033775	80326	160511_QHF_FH_JSI11i_3	60.59	43.814			0.91982	0.8768	12.698	3	0	Plateau	1.3375	1.13	NaN	1	0	Median	0.836	0.98611	NaN	1	0	Median	0.91982	0.8768	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51848000	24349000	27499000	10573000	4258200	6314700	15228000	7421000	7807400	26047000	12670000	13377000	0	0	0	49898	1231	46974	301248;301249;301250;301251	404799;404800;404801;404802;404803;404804	404799			6	
TFPGCTIR	0	Unmodified	950.46439	0.46438634	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		35.24	35.029	2	0.020088	30587	160511_QHF_FH_JSI11i_3	56.659	29.134			0.49681	0.48424	30.409	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49681	0.48424	30.409	2	2	Median	NaN	NaN	NaN	0	0	Median	153700000	89837000	63866000	0	0	0	0	0	0	153700000	89837000	63866000	0	0	0	49899	5254	46975	301252;301253	404805;404806	404805			2	
TFPLDVGSIVGYSGQK	1	Unmodified	1666.8566	0.85663681	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	3	9								2	4	2	4	93.515	93.11	2;3	2.0045E-05	80321	160511_QHF_FH_JSI12i_2	114.82	105.16			0.91258	0.98133	18.793	12	5	Median	1.0877	0.95095	4.0828	2	0	Median	0.86007	1.0207	5.3052	4	2	Median	0.97851	1.0024	10.682	2	0	Median	0.96479	1.0092	32.174	4	3	Median	332530000	157880000	174660000	69346000	33995000	35351000	107010000	51072000	55937000	62573000	29146000	33427000	93607000	43663000	49944000	49900	1615	46976	301254;301255;301256;301257;301258;301259;301260;301261;301262;301263;301264;301265	404807;404808;404809;404810;404811;404812;404813;404814;404815;404816;404817;404818;404819;404820;404821;404822;404823;404824;404825;404826	404809			20	
TFPLDVGSIVGYSGQKK	2	Unmodified	1794.9516	0.95159983	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.246	82.562	3	3.2811E-07	69359	160511_QHF_FH_JSI10i_3	109.42	96.087			1.056	1.2047	14.554	4	0	Linear	1.0148	0.82379	NaN	1	0	Median	0.83289	0.95166	NaN	1	0	Median	1.099	1.006	NaN	1	0	Median	1.1284	1.1715	NaN	1	0	Median	361260000	166880000	194380000	38465000	21731000	16734000	48721000	21096000	27625000	70038000	24198000	45840000	204030000	99850000	104180000	49901	1615	46977	301266;301267;301268;301269	404827;404828;404829;404830;404831;404832	404829			6	
TFPLPLLYFGNQITGLFSTK	1	Unmodified	2256.2194	0.21944183	4994	Q9NTN3	SLC35D1	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	101.4	93.103	2;3	9.7108E-167	52925	160513_QHF_FH_JSI11Kac_6	280.5	194.96			0.88591	0.86389	14.062	7	1	Median	1.0535	0.89124	4.4082	2	0	Median	0.73809	0.86533	25.94	2	0	Median	1.0541	1.0228	NaN	1	0	Median	0.74805	0.79	5.8502	2	1	Median	923960000	495700000	428250000	296280000	143610000	152670000	316350000	178920000	137430000	100440000	51026000	49412000	210880000	122150000	88735000	49902	4994	46978	301270;301271;301272;301273;301274;301275;301276;301277	404833;404834;404835;404836;404837;404838;404839;404840;404841;404842;404843;404844	404835			12	
TFPTHPYFSVQLGPGQLSLFNLLK	1	Unmodified	2703.4425	0.44245891	413	O60343	TBC1D4	TBC1 domain family member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.091	88.673	3	9.3375E-78	50095	160513_QHF_FH_JSI11Kac_6	204.04	196.82			0.96166	0.96422	4.8582	4	0	Median	1.0276	0.88865	NaN	1	0	Median	0.82489	0.98535	NaN	1	0	Median	1.0319	0.98427	NaN	1	0	Median	0.89994	0.94458	NaN	1	0	Median	1112100000	587020000	525060000	240720000	132020000	108710000	421540000	237140000	184400000	241540000	106280000	135260000	208280000	111590000	96694000	49903	413	46979	301278;301279;301280;301281	404845;404846;404847;404848;404849;404850;404851;404852	404845			8	
TFPVDILFSK	1	Unmodified	1165.6383	0.63831118	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			100.71	100.64	2	0.0004516	88359	160511_QHF_FH_JSI9i_2	74.162	45.075			1.2581	1.2712	15.375	2	0	Median	1.3819	1.1402	NaN	1	0	Median	1.1453	1.4172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56581000	23928000	32653000	25764000	10323000	15441000	30817000	13604000	17212000	0	0	0	0	0	0	49904	3861	46980	301282;301283	404853;404854	404853			2	
TFPVLLR	0	Unmodified	844.51707	0.51707383	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.67	0.471		2	4							2	2	1	1	67.943	67.113	2	0.005487	56106	160511_QHF_FH_JSI10i_3	94.669	94.669			1.1782	1.1412	50.224	6	2	Median	2.5897	2.1143	4.2045	2	1	Median	0.60022	0.70661	3.5782	2	1	Median	1.0427	0.97323	NaN	1	0	Median	1.3315	1.3381	NaN	1	0	Median	591190000	238040000	353150000	251050000	67146000	183900000	141540000	84155000	57381000	77375000	38311000	39064000	121230000	48430000	72804000	49905	2094	46981	301284;301285;301286;301287;301288;301289	404855;404856;404857;404858;404859;404860;404861;404862	404857			8	
TFPYQHR	0	Unmodified	947.46135	0.46134987	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				18.721	17.56	2	0.036703	14090	160511_QHF_FH_JSI9i_3	50.12	31.389			1.4092	1.1569	NaN	1	1	Median	1.4092	1.1569	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20539000	7866400	12673000	20539000	7866400	12673000	0	0	0	0	0	0	0	0	0	49906	3675	46982	301290	404863	404863			1	
TFQAVMR	0	Unmodified	851.43236	0.43235793	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	29.396	28.592	2	0.016131	24666	160511_QHF_FH_JSI11i_3	63.563	44.203			0.97244	0.98728	32.671	8	3	Median	1.4785	1.2224	22.957	2	0	Median	0.68711	0.82424	62.551	2	1	Median	1.082	1.0533	16.414	2	1	Median	0.7376	0.78847	13.56	2	1	Median	659200000	342990000	316200000	129930000	57324000	72604000	147090000	91642000	55451000	179830000	90627000	89208000	202340000	103400000	98942000	49907	1194	46983	301291;301292;301293;301294;301295;301296;301297;301298	404864;404865;404866;404867;404868;404869	404864			6	
TFQFQPSK	1	Unmodified	981.49198	0.4919813	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.829	2	2	4							2	3	1	2	37.742	36.98	2	0.00010933	32443	160511_QHF_FH_JSI11i_3	128.69	56.453			0.91836	0.91163	16.431	8	0	Median	1.1681	0.96246	8.2211	2	0	Median	0.66454	0.82144	18.156	3	0	Median	0.84012	0.79403	NaN	1	0	Median	1.0313	1.065	21.443	2	0	Median	1305400000	688200000	617240000	176800000	87551000	89247000	348770000	183230000	165530000	268330000	134110000	134220000	511540000	283300000	228240000	49908	3749	46984	301299;301300;301301;301302;301303;301304;301305;301306	404870;404871;404872;404873;404874;404875;404876;404877;404878;404879;404880;404881;404882;404883;404884	404872			15	
TFQGHTNEVNAIK	1	Unmodified	1457.7263	0.72629134	4568;459	Q9BZK7;O60907	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.11		5	9						3	2	4	7	4	25.946	23.884	2;3	8.5092E-11	20589	160511_QHF_FH_JSI9i_2	144.51	131.53			1.0159	1.0742	55.597	16	9	Median	1.0234	0.89827	11.579	2	0	Median	1.0445	1.2577	4.8366	3	1	Median	1.1563	1.1836	68.826	7	5	Median	0.7495	0.77058	65.62	4	3	Median	1857000000	850890000	1006100000	159720000	92660000	67058000	204750000	101830000	102930000	841800000	368920000	472880000	650750000	287470000	363280000	49909	4568;459	46985	301307;301308;301309;301310;301311;301312;301313;301314;301315;301316;301317;301318;301319;301320;301321;301322;301323	404885;404886;404887;404888;404889;404890;404891;404892;404893;404894;404895;404896;404897;404898;404899;404900;404901;404902;404903;404904;404905	404895			20	
TFQGKPIK	2	Unmodified	917.53345	0.53345218	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	13.828	12.935	3	0.010786	9606	160511_QHF_FH_JSI12i_3	43.246	31.478			0.21941	0.17858	NaN	1	1	Median	0.21941	0.17858	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66076000	48249000	17827000	66076000	48249000	17827000	0	0	0	0	0	0	0	0	0	49910	3859	46986	301324;301325	404906;404907	404907			2	
TFQLQLLSPSSSIVPAFNTGTITQVIK	1	Unmodified	2889.5852	0.58515998	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		102.12	102.09	3	2.4765E-08	91248	160511_QHF_FH_JSI11i_3	70.145	65.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	225970000	104510000	121470000	0	0	0	67223000	36700000	30523000	158750000	67808000	90944000	0	0	0	49911	369	46987	301326;301327	404908;404909;404910	404909			3	
TFQMAEYLK	1	Unmodified	1129.5478	0.54778161	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			63.559	62.708	2	0.0033608	55479	160511_QHF_FH_JSI10i_2	70.908	40.296			1.3454	1.6677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3454	1.6677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102030000	45576000	56454000	0	0	0	102030000	45576000	56454000	0	0	0	0	0	0	49912	1429	46988	301328	404911	404911			1	
TFQNSLIHLGLNTMK	1	Unmodified	1715.9029	0.9028755	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	3	0			3							1		1	1	75.427	74.853	3	7.6167E-05	61623	160511_QHF_FH_JSI9i_3	79.013	68.956			0.87776	0.71342	24.172	3	1	Median	0.87776	0.70449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1686	1.0774	NaN	1	1	Median	0.6607	0.71342	NaN	1	0	Median	104790000	55904000	48885000	58118000	33985000	24133000	0	0	0	35263000	15583000	19680000	11407000	6335800	5071500	49913	3586	46989	301329;301330;301331	404912;404913	404913			2	
TFQPGSWMPR	0	Unmodified	1205.5652	0.56516301	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.4	0.49		3	2							2	3			62.707	61.573	2	4.8906E-05	50514	160511_QHF_FH_JSI9i_3	93.178	88.394			0.79117	0.91922	24.67	5	1	Median	0.90326	0.7541	34.42	2	0	Median	0.76717	0.91922	13.672	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	213410000	115750000	97665000	99605000	51274000	48331000	113810000	64476000	49334000	0	0	0	0	0	0	49914	3500	46990	301332;301333;301334;301335;301336	404914;404915;404916;404917;404918;404919;404920	404916			7	
TFRIEEIPLDQVDIDK	1	Unmodified	1930.0048	0.004757612	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		83.911	83.911	3	0.00010821	75052	160511_QHF_FH_JSI11i_3	73.464	62.349			1.3607	1.2863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3607	1.2863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109180000	44445000	64738000	0	0	0	0	0	0	109180000	44445000	64738000	0	0	0	49915	3922	46991	301337;301338;301339	404921;404922;404923	404921			3	
TFSAFHK	1	Unmodified	836.41809	0.41808807	5134	Q9NYU1	UGGT2	UDP-glucose:glycoprotein glucosyltransferase 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			21.523	20.319	3	0.045427	16630	160511_QHF_FH_JSI10i_3	28.218	18.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21190000	0	21190000	0	0	0	21190000	0	21190000	0	0	0	0	0	0	49916	5134	46992	301340	404924	404924			1	
TFSEVLAEK	1	Unmodified	1022.5284	0.52842638	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			42.793	41.785	2	0.0024032	36707	160511_QHF_FH_JSI9i_2	64.841	43.377			0.82838	0.84889	3.3711	2	0	Median	0.9751	0.82889	NaN	1	0	Median	0.70374	0.86937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1068800000	537080000	531750000	517840000	221130000	296720000	550980000	315950000	235030000	0	0	0	0	0	0	49917	484	46993	301341;301342	404925;404926	404925			2	
TFSFAIPLIEK	1	Unmodified	1264.7067	0.7067251	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	2	4	4	98.405	95.826	2	6.2807E-18	81846	160511_QHF_FH_JSI9i_3	157.95	104.78			0.96222	0.94678	12.704	11	2	Median	1.0065	0.86416	17.118	3	0	Median	0.73281	0.86724	17.791	2	0	Median	1.0267	1.0095	7.9946	3	1	Median	0.97524	1.0309	11.317	3	1	Plateau	6261700000	3180800000	3081000000	800480000	360070000	440410000	1202300000	699050000	503240000	1850400000	885690000	964720000	2408600000	1235900000	1172600000	49918	4940	46994	301343;301344;301345;301346;301347;301348;301349;301350;301351;301352;301353;301354;301355	404927;404928;404929;404930;404931;404932;404933;404934;404935;404936;404937;404938;404939;404940;404941;404942;404943;404944;404945	404934			19	
TFSHELSDFGLESTAGEIPVVAIR	0	Unmodified	2574.2966	0.29658254	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	3.87		13	8						2	5	5	7	6	98.925	98.152	2;3;4	8.6862E-52	86031	160511_QHF_FH_JSI12i_2	268.2	243.26			1.1211	1.1222	7.5645	22	1	Median	1.2698	1.0711	4.5923	4	0	Median	0.92013	1.1099	2.7051	5	0	Median	1.135	1.1577	8.1049	7	0	Median	1.0673	1.1396	11.061	6	1	Median	9253700000	4467800000	4785900000	781320000	339590000	441730000	1680600000	869030000	811570000	3004300000	1426000000	1578300000	3787500000	1833200000	1954300000	49919	1344	46995	301356;301357;301358;301359;301360;301361;301362;301363;301364;301365;301366;301367;301368;301369;301370;301371;301372;301373;301374;301375;301376;301377;301378	404946;404947;404948;404949;404950;404951;404952;404953;404954;404955;404956;404957;404958;404959;404960;404961;404962;404963;404964;404965;404966;404967;404968;404969;404970;404971;404972;404973;404974;404975;404976;404977;404978;404979;404980;404981;404982;404983;404984;404985;404986;404987;404988;404989;404990;404991;404992;404993;404994;404995;404996;404997;404998;404999;405000;405001;405002	404957			57	
TFSPDVFR	0	Unmodified	967.47633	0.47633123	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.916	54.404	2	0.0026636	47089	160511_QHF_FH_JSI11i_2	86.095	45.992			0.90838	0.91897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90838	0.91897	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	167230000	82086000	85146000	0	0	0	0	0	0	167230000	82086000	85146000	0	0	0	49920	4819	46996	301379	405003	405003			1	
TFSSIPVSR	0	Unmodified	992.5291	0.52909508	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.66			4					2		1	2	1	2	42.394	38.448	2	1.2067E-06	34013	160511_QHF_FH_JSI11i_3	133.86	105.76			1.0237	1.0714	39.949	6	0	Median	1.3645	1.127	NaN	1	0	Median	0.95991	1.111	12.287	2	0	Median	0.97028	0.92397	NaN	1	0	Median	1.4568	1.5361	75.946	2	0	Median	723830000	371310000	352520000	41003000	13996000	27007000	105030000	57251000	47777000	248430000	119760000	128660000	329370000	180300000	149070000	49921	2517	46997	301380;301381;301382;301383;301384;301385	405004;405005;405006;405007;405008;405009	405005			6	
TFSSTESLR	0	Unmodified	1026.4982	0.49818889	2270	Q08379	GOLGA2	Golgin subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	25.312	24.569	2	0.00081194	20557	160511_QHF_FH_JSI11i_2	73.665	51.534			1.1709	1.1403	34.137	6	2	Median	1.2575	1.0593	NaN	1	0	Median	0.98526	1.1964	73.505	2	2	Median	1.3554	1.3623	NaN	1	0	Median	1.0763	1.1403	8.5762	2	0	Median	309830000	155330000	154500000	40651000	21173000	19478000	104140000	53948000	50189000	86188000	45500000	40688000	78852000	34705000	44147000	49922	2270	46998	301386;301387;301388;301389;301390;301391	405010;405011;405012;405013;405014;405015;405016	405013			7	
TFSVTGWK	1	Unmodified	924.47052	0.47051757	3176	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	53.969	53.09	2	0.0016392	44424	160511_QHF_FH_JSI10i_3	86.794	59.269			0.90785	1.0317	28.444	5	0	Median	1.0037	0.8445	52.146	2	0	Median	0.90785	1.0317	NaN	1	0	Median	0.8995	0.86824	NaN	1	0	Median	1.0423	1.0625	NaN	1	0	Median	931520000	433110000	498410000	182120000	70804000	111320000	160320000	92622000	67703000	172240000	83364000	88873000	416840000	186320000	230520000	49923	3176	46999	301392;301393;301394;301395;301396	405017;405018;405019;405020;405021;405022;405023	405019			7	
TFSVWYVPEVTGTHK	1	Unmodified	1749.8726	0.87262123	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.17		9	10						8	7	7	6	7	79.207	76.113	2;3	3.7022E-75	39987	160513_QHF_FH_JSI10Kac_6	279.53	234.66			1.0089	0.99692	15.875	26	5	Median	1.197	1.0459	14.136	6	1	Median	0.83832	0.95837	17.238	7	2	Median	0.96824	0.95875	9.4143	6	0	Median	1.0062	1.0318	20.358	7	2	Median	19349000000	9809200000	9540100000	3870200000	1766400000	2103700000	5619400000	3263200000	2356200000	5310100000	2749600000	2560400000	4549700000	2030000000	2519700000	49924	1192	47000	301397;301398;301399;301400;301401;301402;301403;301404;301405;301406;301407;301408;301409;301410;301411;301412;301413;301414;301415;301416;301417;301418;301419;301420;301421;301422;301423	405024;405025;405026;405027;405028;405029;405030;405031;405032;405033;405034;405035;405036;405037;405038;405039;405040;405041;405042;405043;405044;405045;405046;405047;405048;405049;405050;405051;405052;405053;405054;405055;405056;405057;405058;405059;405060;405061;405062;405063;405064;405065;405066;405067;405068;405069;405070;405071;405072;405073;405074;405075;405076;405077;405078;405079;405080;405081;405082;405083;405084;405085;405086;405087;405088;405089;405090;405091;405092;405093;405094;405095;405096;405097;405098;405099;405100;405101;405102;405103;405104	405103			81	
TFSWASVTSK	1	Unmodified	1112.5502	0.55022446	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.56	1	3	4					1	4	3	5	3	2	60.899	56.799	2	5.4218E-10	48722	160511_QHF_FH_JSI12i_3	138.98	124.82			0.99173	1.0387	20.494	13	2	Median	1.2337	1.0387	15.337	3	0	Median	0.83477	0.9646	32.97	5	1	Median	1.0706	1.0089	4.834	3	1	Median	1.0047	1.0515	0.6762	2	0	Median	9586900000	4571600000	5015300000	1943900000	816170000	1127700000	2310100000	1271600000	1038500000	2399500000	1068500000	1331000000	2933400000	1415300000	1518100000	49925	2381	47001	301424;301425;301426;301427;301428;301429;301430;301431;301432;301433;301434;301435;301436	405105;405106;405107;405108;405109;405110;405111;405112;405113;405114;405115;405116;405117;405118;405119;405120;405121;405122;405123;405124;405125;405126;405127;405128;405129;405130	405126			26	
TFSYAGFEMQPK	1	Unmodified	1404.6384	0.63838754	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	6.36	5	8	4					4	4	6	7	6	6	68.692	65.08	2;3	1.7756E-53	56301	160511_QHF_FH_JSI12i_2	221.52	204.85			1.096	1.0751	18.204	25	4	Median	1.3233	1.0981	7.7301	6	0	Median	0.8803	1.0188	32.529	7	1	Median	1.095	1.0669	3.9213	6	2	Median	1.1038	1.2096	14.626	6	1	Median	8230400000	4052100000	4178400000	1212000000	488530000	723460000	2265600000	1244200000	1021400000	2870700000	1495300000	1375400000	1882100000	824020000	1058100000	49926	4321	47002	301437;301438;301439;301440;301441;301442;301443;301444;301445;301446;301447;301448;301449;301450;301451;301452;301453;301454;301455;301456;301457;301458;301459;301460;301461	405131;405132;405133;405134;405135;405136;405137;405138;405139;405140;405141;405142;405143;405144;405145;405146;405147;405148;405149;405150;405151;405152;405153;405154;405155;405156;405157;405158;405159;405160;405161;405162;405163;405164;405165;405166	405136			34	
TFSYAGFEMQPK	1	Oxidation (M)	1420.6333	0.63330216	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.42		4	2				1	4	3	3	3	3	5	59.609	52.856	2	1.7673E-10	46812	160511_QHF_FH_JSI10i_2	143.4	131.11			0.96342	1.0262	24.562	13	3	Median	1.1158	0.97058	10.439	3	1	Median	0.87979	0.78065	18.85	3	0	Plateau	1.0868	1.1059	20.691	3	1	Plateau	0.96327	1.0736	39.001	4	1	Median	568050000	300270000	267780000	105330000	47887000	57444000	122780000	72225000	50550000	187070000	94308000	92759000	152880000	85848000	67031000	49927	4321	47002	301462;301463;301464;301465;301466;301467;301468;301469;301470;301471;301472;301473;301474;301475	405167;405168;405169;405170;405171;405172;405173;405174;405175;405176;405177;405178;405179;405180;405181;405182;405183;405184	405180		2451	18	
TFTDHMLMVEWNDK	1	Unmodified	1765.7804	0.7803771	286	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	73.711	73.614	2;3	1.0814E-12	63914	160511_QHF_FH_JSI12i_3	118.48	103.79			0.96126	0.9866	28.693	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90751	0.85842	38.955	2	1	Median	0.96126	0.9866	NaN	1	0	Median	219630000	109150000	110480000	0	0	0	0	0	0	121530000	65520000	56006000	98101000	43631000	54469000	49928	286	47003	301476;301477;301478;301479	405185;405186;405187	405187			2	
TFTDHVMLFTQTK	1	Unmodified	1567.7705	0.77046434	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				70.165	61.505	3	0.0044265	32694	160513_QHF_FH_JSI9Kac_6	50.088	38.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49929	4096	47004	301480	405188	405188			1	
TFTEMDSHEEK	1	Unmodified	1352.5554	0.55544577	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	19.439	18.671	2;3	1.745E-13	15220	160511_QHF_FH_JSI11i_2	144.1	142.47			1.033	1.0062	24.056	9	2	Median	1.0431	0.89857	1.4025	2	0	Median	1.1856	1.4593	33.557	3	2	Median	0.98966	0.98946	2.374	2	0	Median	1.0172	1.1333	15.858	2	0	Median	1399800000	722730000	677060000	245960000	111980000	133980000	396610000	207190000	189420000	429110000	213090000	216020000	328110000	190480000	137630000	49930	1620	47005	301481;301482;301483;301484;301485;301486;301487;301488;301489	405189;405190;405191;405192;405193;405194;405195;405196;405197;405198;405199;405200;405201;405202;405203;405204;405205	405201			17	
TFTEMDSHEEK	1	Oxidation (M)	1368.5504	0.55036039	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	19.304	18.689	2;3	0.0045279	15360	160511_QHF_FH_JSI12i_2	65.347	60.734			1.0087	1.0848	63.792	4	2	Median	NaN	NaN	NaN	0	0	Median	1.2648	1.5442	NaN	1	0	Median	1.1249	1.0848	46	2	2	Median	0.35286	0.40166	NaN	1	0	Median	121120000	73675000	47445000	0	0	0	39220000	20465000	18754000	29090000	15471000	13619000	52810000	37738000	15072000	49931	1620	47005	301490;301491;301492;301493;301494	405206;405207;405208;405209;405210	405207		1297	4	
TFTLKHSLVRHQRIHQK	2	Unmodified	2128.213	0.21300852	3881	Q92766	RREB1	Ras-responsive element-binding protein 1	yes	yes	0	0	0	3			By MS/MS	By MS/MS	13	0						2						1	1	7.3192	0.096032	7	0.060456	2860	160513_QHF_FH_JSI11Kac_3	5.2096	0.49996			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13805000	13805000	0	0	0	0	0	0	0	5801200	5801200	0	8003400	8003400	0	49932	3881	47006	301495;301496	405211;405212	405211			2	
TFTLLGFK	1	Unmodified	925.5273	0.52730417	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	80.795	80.07	2	0.0016273	67182	160511_QHF_FH_JSI10i_3	86.953	40.583			0.94532	0.92682	4.3535	4	0	Median	1.1678	0.95332	NaN	1	0	Median	0.80564	0.94352	NaN	1	0	Median	0.91744	0.8657	NaN	1	0	Median	0.97405	0.91042	NaN	1	0	Median	97399000	47054000	50345000	20286000	8106800	12179000	19441000	10374000	9066700	25697000	11857000	13839000	31976000	16716000	15260000	49933	4932	47007	301497;301498;301499;301500	405213;405214;405215;405216;405217	405214			5	
TFTMEILR	0	Unmodified	1009.5267	0.52665224	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				12.5	11.888	3	0.056662	9540	160511_QHF_FH_JSI9i_2	12.527	1.654			1.2644	1.0786	NaN	1	0	Median	1.2644	1.0786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39146000	18502000	20644000	39146000	18502000	20644000	0	0	0	0	0	0	0	0	0	49934	2199	47008	301501	405218	405218			1	
TFTTQETITNAETAK	1	Unmodified	1654.805	0.80499517	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.45	6.14	8	4	4		2	7	6	6	5	8	12	13	9	48.111	41.888	2;3	1.0796E-233	37212	160511_QHF_FH_JSI9i_1	342.7	297.54		+	0.8657	0.93666	31.223	38	5	Median	1.1598	0.95809	55.566	8	1	Median	0.76794	0.9104	10.778	10	1	Median	0.87398	0.86668	32.812	11	3	Median	0.8856	0.96063	16.695	9	0	Median	18702000000	10077000000	8625400000	4045900000	2061200000	1984700000	4956600000	3043500000	1913100000	5522700000	2854200000	2668500000	4176900000	2117900000	2059000000	49935	856;75	47009	301502;301503;301504;301505;301506;301507;301508;301509;301510;301511;301512;301513;301514;301515;301516;301517;301518;301519;301520;301521;301522;301523;301524;301525;301526;301527;301528;301529;301530;301531;301532;301533;301534;301535;301536;301537;301538;301539;301540;301541;301542;301543	405219;405220;405221;405222;405223;405224;405225;405226;405227;405228;405229;405230;405231;405232;405233;405234;405235;405236;405237;405238;405239;405240;405241;405242;405243;405244;405245;405246;405247;405248;405249;405250;405251;405252;405253;405254;405255;405256;405257;405258;405259;405260;405261;405262;405263;405264;405265;405266;405267;405268;405269;405270;405271;405272;405273;405274;405275;405276;405277;405278;405279;405280;405281;405282;405283;405284;405285;405286;405287;405288;405289;405290;405291;405292;405293;405294;405295;405296;405297;405298;405299	405263			80	
TFTTQETITNAETAKEWFLQAAK	2	Unmodified	2628.3071	0.30714722	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		96.68	96.466	3	7.1557E-07	85848	160511_QHF_FH_JSI11i_3	74.698	67.338			0.41795	0.42847	77.606	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66717	0.74172	NaN	1	1	Median	0.26182	0.24751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43274000	24507000	18767000	0	0	0	20287000	11665000	8621900	22986000	12841000	10145000	0	0	0	49936	856	47010	301544;301545	405300;405301	405300			2	
TFTTQETITNAETAKEWFLQAAK	2	Acetyl (K)	2670.3177	0.31771191	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		96.554	87.154	3	1.6418E-19	49541	160513_QHF_FH_JSI11Kac_6	183.25	169.14			0.6101	0.57932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6101	0.57932	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	131090000	90372000	40714000	0	0	0	0	0	0	131090000	90372000	40714000	0	0	0	49937	856	47010	301546	405302	405302	534;538		1	
TFTVQTTWSSMK	1	Unmodified	1415.6755	0.67550132	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	63.971	63.685	2	0.0007132	54893	160511_QHF_FH_JSI12i_3	79.693	41.971			0.65455	0.66286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65455	0.66286	NaN	1	1	Median	29044000	18149000	10896000	0	0	0	0	0	0	0	0	0	29044000	18149000	10896000	49938	2621	47011	301547;301548	405303;405304	405303			2	
TFTWLVGK	1	Unmodified	950.52255	0.52255314	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	3	3	2	2	73.1	69.074	2	0.0017524	58301	160511_QHF_FH_JSI10i_3	98.299	79.569			0.9471	1.0162	45.594	10	2	Median	1.4098	1.1329	6.674	3	0	Plateau	0.94266	1.1384	40.595	3	1	Median	0.94624	0.91729	1.5984	2	0	Median	0.48366	0.52432	63.029	2	1	Median	772650000	342680000	429970000	309390000	130900000	178490000	321360000	135470000	185890000	99183000	50141000	49042000	42708000	26166000	16541000	49939	100	47012	301549;301550;301551;301552;301553;301554;301555;301556;301557;301558	405305;405306;405307;405308;405309;405310;405311;405312;405313;405314;405315;405316;405317	405306			13	
TFTYLLGSDAAALLFNSK	1	Unmodified	1931.004	0.0040293305	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		96.523	87.124	2	1.9488E-31	49531	160513_QHF_FH_JSI11Kac_6	207.52	177.09			0.95584	0.88314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95584	0.88314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60969000	39437000	21532000	0	0	0	0	0	0	60969000	39437000	21532000	0	0	0	49940	2771	47013	301559	405318	405318			1	
TFVAQMTVFDK	1	Unmodified	1285.6377	0.63765925	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	71.027	70.729	2	0.00012706	61285	160511_QHF_FH_JSI12i_2	90.685	70.356			1.355	1.3633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.355	1.3633	NaN	1	1	Median	28387000	11521000	16865000	0	0	0	0	0	0	0	0	0	28387000	11521000	16865000	49941	2606	47014	301560;301561;301562	405319;405320;405321	405319			3	
TFVDNIQTAFNTR	0	Unmodified	1525.7525	0.75250609	3508	Q8N201	INTS1	Integrator complex subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.952	66.952	2	5.2376E-05	59615	160511_QHF_FH_JSI11i_3	77.062	47.319			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49942	3508	47015	301563	405322	405322			1	
TFVEAGK	1	Unmodified	750.3912	0.39120462	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	24.63	23.817	2	0.011199	14396	160511_QHF_FH_JSI10i_1	62.717	41.171			0.81853	0.9824	32.226	3	1	Median	1.0028	0.83668	43.649	2	1	Median	0.81853	0.9824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	556530000	339000000	217530000	289820000	198160000	91653000	266720000	140830000	125880000	0	0	0	0	0	0	49943	5205	47016	301564;301565;301566;301567;301568;301569	405323;405324;405325;405326;405327	405325			5	
TFVEAGKNNSK	2	Acetyl (K)	1235.6146	0.61461563	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.106	22.921	2	0.0055573	14559	160513_QHF_FH_JSI11Kac_4	69.979	43.465			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1173300	1173300	0	0	0	0	0	0	0	1173300	1173300	0	0	0	0	49944	5205	47017	301570	405328	405328	3333		1	
TFVEKYEK	2	Acetyl (K)	1084.5441	0.54407645	2738	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	46.065	35.845	2	0.0020624	20127	160513_QHF_FH_JSI11Kac_5	99.802	64.994			0.92544	1.0374	37.436	7	0	Median	1.2846	1.0374	NaN	1	0	Median	0.97959	1.1845	2.8102	2	0	Median	0.54168	0.53549	33.619	2	0	Median	0.84141	0.93873	15.214	2	0	Median	96191000	51571000	44620000	5866000	2737200	3128800	37076000	19654000	17422000	22574000	13152000	9422200	30674000	16028000	14646000	49945	2738	47018	301571;301572;301573;301574;301575;301576;301577	405329;405330;405331;405332;405333;405334;405335	405334	2658		7	
TFVGEPQR	0	Unmodified	932.47158	0.4715802	5204	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		22.153	21.818	2	0.019228	18069	160511_QHF_FH_JSI11i_2	57.281	33.309			0.97642	0.99778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97642	0.99778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20539000	10611000	9928200	0	0	0	0	0	0	20539000	10611000	9928200	0	0	0	49946	5204	47019	301578	405336	405336			1	
TFVHVVPAKPEGTFK	2	Unmodified	1655.9035	0.90352742	5186	Q9P0M9	MRPL27	39S ribosomal protein L27, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	1	3	46.467	45.583	3;4	5.7518E-05	37403	160511_QHF_FH_JSI9i_3	77.222	64.862			0.98578	0.99141	29.472	8	4	Median	1.0482	0.84954	3.4284	2	0	Median	0.88085	1.0167	1.8357	2	0	Median	1.0254	1.0015	NaN	1	1	Median	0.94774	0.98139	51.002	3	3	Median	2356600000	1225300000	1131300000	561930000	262090000	299840000	469700000	240530000	229170000	547280000	287140000	260130000	777690000	435500000	342190000	49947	5186	47020	301579;301580;301581;301582;301583;301584;301585;301586	405337;405338;405339;405340;405341;405342;405343;405344;405345;405346;405347;405348;405349	405342			13	
TFVHVVPAKPEGTFK	2	Acetyl (K)	1697.9141	0.91409211	5186	Q9P0M9	MRPL27	39S ribosomal protein L27, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.985	60.472	3	0.029757	32766	160513_QHF_FH_JSI11Kac_6	40.857	28.024			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6264400	6264400	0	0	0	0	0	0	0	6264400	6264400	0	0	0	0	49948	5186	47020	301587	405350	405350			1	
TFVLEVMGR	0	Oxidation (M)	1066.5481	0.54811597	2176;897;1129	P17858;Q01813;P08237	PFKL;PFKP;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.33		2	7					2	4	3	4	3	5	58.428	54.135	2	0.0055516	45369	160511_QHF_FH_JSI10i_3	59.245	48.024			0.95705	0.97787	30.098	13	1	Median	1.3445	1.1287	35.914	3	0	Plateau	1.0134	1.2238	7.958	2	0	Median	0.95705	0.9363	31.951	3	0	Median	0.92702	0.97787	36.13	5	1	Median	471000000	263190000	207810000	50971000	27010000	23961000	65680000	37454000	28225000	149990000	79452000	70537000	204360000	119270000	85082000	49949	1129;2176;897	47021	301588;301589;301590;301591;301592;301593;301594;301595;301596;301597;301598;301599;301600;301601;301602	405351;405352;405353;405354;405355;405356;405357;405358;405359;405360;405361;405362;405363;405364;405365	405355		466	15	
TFVLEVMGR	0	Unmodified	1050.5532	0.55320134	2176;897;1129	P17858;Q01813;P08237	PFKL;PFKP;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	73.567	70.202	2	1.2638E-16	63374	160511_QHF_FH_JSI11i_3	178.83	135.76			0.94782	0.99272	12.15	12	0	Median	1.2916	1.1216	11.737	3	0	Median	0.8484	1.0321	6.712	3	0	Median	1.0395	1.0038	11.712	3	0	Plateau	0.92086	0.97616	9.093	3	0	Median	4608600000	2253600000	2355000000	574870000	207200000	367670000	971230000	500070000	471160000	1285500000	613450000	672090000	1776900000	932870000	844070000	49950	1129;2176;897	47021	301603;301604;301605;301606;301607;301608;301609;301610;301611;301612;301613;301614	405366;405367;405368;405369;405370;405371;405372;405373;405374;405375;405376;405377;405378;405379;405380;405381;405382;405383;405384;405385;405386;405387;405388;405389	405367			23	
TFVNITPAEVGVLVGK	1	Unmodified	1642.9294	0.92940782	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.97	5.74	9	11	10						8	9	7	12	10	94.542	92.449	2;3	5.2997E-98	90145	160511_QHF_FH_JSI11i_1	263.74	251.87			1.0361	1.0798	54.47	36	12	Median	1.1505	0.93553	85.644	9	4	Median	1.0013	1.1684	7.3193	7	0	Median	2.1126	2.0059	48.517	11	5	Linear	1.0553	1.1307	16.078	9	3	Median	31937000000	14680000000	17257000000	4309400000	1768400000	2541000000	5490300000	2616800000	2873500000	12937000000	6147200000	6790000000	9200100000	4147200000	5052800000	49951	876	47022	301615;301616;301617;301618;301619;301620;301621;301622;301623;301624;301625;301626;301627;301628;301629;301630;301631;301632;301633;301634;301635;301636;301637;301638;301639;301640;301641;301642;301643;301644;301645;301646;301647;301648;301649;301650;301651;301652	405390;405391;405392;405393;405394;405395;405396;405397;405398;405399;405400;405401;405402;405403;405404;405405;405406;405407;405408;405409;405410;405411;405412;405413;405414;405415;405416;405417;405418;405419;405420;405421;405422;405423;405424;405425;405426;405427;405428;405429;405430;405431;405432;405433;405434;405435;405436;405437;405438;405439;405440;405441;405442;405443;405444;405445;405446;405447;405448;405449;405450;405451;405452;405453;405454;405455;405456;405457;405458;405459;405460;405461;405462;405463;405464;405465;405466;405467;405468;405469;405470;405471;405472;405473;405474;405475;405476;405477;405478;405479;405480;405481;405482;405483;405484;405485;405486;405487;405488;405489;405490;405491;405492;405493;405494;405495;405496;405497;405498;405499;405500;405501;405502;405503;405504;405505;405506;405507;405508	405406			119	
TFVNITPAEVGVLVGKDR	1	Unmodified	1914.0575	0.057461884	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		90.595	89.507	3	5.4735E-07	74889	160511_QHF_FH_JSI10i_3	101.67	91.504			0.74076	0.7117	27.159	2	0	Median	1.0756	0.86239	NaN	1	0	Median	0.51017	0.58735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59425000	38856000	20569000	30939000	17471000	13468000	28487000	21385000	7101700	0	0	0	0	0	0	49952	876	47023	301653;301654;301655	405509;405510;405511	405510			3	
TFVNITPAEVGVLVGKDR	1	Acetyl (K)	1956.068	0.068026571	876	P07737	PFN1	Profilin-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		91.482	82.121	2	4.2341E-69	46059	160513_QHF_FH_JSI11Kac_6	258.96	205.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41442000	41442000	0	0	0	0	0	0	0	41442000	41442000	0	0	0	0	49953	876	47023	301656	405512	405512	585		1	
TFVPKNER	1	Acetyl (K)	1031.54	0.53999412	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		35.408	25.754	2	0.0067688	15169	160513_QHF_FH_JSI11Kac_5	81.548	64.772			0.53265	0.5656	100.46	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9977	1.1508	NaN	1	0	Median	0.28437	0.27797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14747000	10822000	3925100	0	0	0	3076300	1511600	1564600	11671000	9310600	2360500	0	0	0	49954	2282	47024	301657;301658	405513	405513	2379		1	
TFVQHYAFIMK	1	Unmodified	1383.7009	0.70092821	3190	Q6ZT12	UBR3	E3 ubiquitin-protein ligase UBR3	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	16	0									3	1	1		1	68.287	59.467	2;3	8.7521E-06	31243	160513_QHF_FH_JSI12Kac_6	98.737	90.224			1.0598	1.2196	6.3905	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0633	1.276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0564	1.1657	NaN	1	0	Median	77618000	37445000	40173000	0	0	0	63799000	32025000	31775000	0	0	0	13819000	5420600	8398500	49955	3190	47025	301659;301660;301661	405514;405515	405515			2	
TFVSDLLPPTDK	1	Unmodified	1331.6973	0.69728262	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		72.605	72.186	2	0.00065317	63387	160511_QHF_FH_JSI11i_2	81.338	61.034			1.3005	1.3868	10.564	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3452	1.4944	NaN	1	1	Median	1.2572	1.287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41009000	15211000	25798000	0	0	0	19832000	6293700	13538000	21177000	8917800	12260000	0	0	0	49956	3274	47026	301662;301663	405516;405517	405517			2	
TFVSGACDASIK	1	Unmodified	1254.5914	0.59143734	2032	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	2	4	2	37.714	37.1	2	3.2645E-05	33176	160511_QHF_FH_JSI10i_1	113.63	77.686			2.3279	1.3704	76.813	6	6	Linear	9.6687	8.2242	NaN	1	1	Median	2.6879	3.2675	92.867	2	2	Median	2.3279	2.2977	65.723	2	2	Median	1.4254	1.498	NaN	1	1	Median	1437300000	326390000	1110900000	143160000	9622500	133540000	436390000	111460000	324940000	712150000	138530000	573620000	145590000	66786000	78805000	49957	2032	47027	301664;301665;301666;301667;301668;301669;301670;301671;301672	405518;405519;405520;405521;405522;405523;405524;405525;405526	405522			9	
TFVSGACDASSK	1	Unmodified	1228.5394	0.53940177	4830	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	6						3			2	1	4	2	22.933	20.509	2	1.8826E-05	17579	160511_QHF_FH_JSI11i_1	116.55	109.07			1.2699	1.2937	44.944	8	7	Median	1.3686	1.1066	23.206	2	2	Median	1.0776	1.2836	NaN	1	0	Median	1.1775	1.167	49.373	4	4	Median	2.5189	2.6435	NaN	1	1	Median	540800000	218810000	321990000	101990000	45507000	56481000	60667000	27178000	33489000	218010000	102340000	115670000	160140000	43788000	116350000	49958	4830	47028	301673;301674;301675;301676;301677;301678;301679;301680;301681	405527;405528;405529;405530;405531;405532;405533;405534;405535;405536;405537	405527			11	
TFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSK	1	Oxidation (M)	3524.8146	0.81464393	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									5	1	4			102.83	96.418	3;4	2.3618E-235	57966	160513_QHF_FH_JSI10Kac_6	312.52	293.01			0.9132	1.0146	12.927	5	2	Median	1.0771	0.9161	NaN	1	0	Median	0.88397	1.0481	11.953	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	655700000	350570000	305130000	98289000	48099000	50190000	557410000	302470000	254940000	0	0	0	0	0	0	49959	454	47029	301682;301683;301684;301685;301686	405538;405539;405540;405541;405542;405543	405541		180;181	6	
TFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSK	1	Unmodified	3508.8197	0.81972931	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			105.45	97.396	3;4	0	55576	160513_QHF_FH_JSI9Kac_6	406.21	389.76			1.0399	0.88157	3.4038	3	0	Median	1.0567	0.89303	1.8254	2	0	Median	0.71803	0.84562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1217800000	677750000	540080000	357460000	177880000	179580000	860360000	499870000	360500000	0	0	0	0	0	0	49960	454	47029	301687;301688;301689	405544;405545;405546;405547	405544			4	
TFVSQASATMQQYAQR	0	Unmodified	1815.8574	0.85738187	3538	Q8N573	OXR1	Oxidation resistance protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.981	53.407	3	0.003249	44680	160511_QHF_FH_JSI10i_3	45.614	34.174			1.2601	1.0612	NaN	1	1	Median	1.2601	1.0612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12093000	2806700	9286300	12093000	2806700	9286300	0	0	0	0	0	0	0	0	0	49961	3538	47030	301690;301691	405548;405549	405548			2	
TFVVQGFGNVGLHSMR	0	Unmodified	1747.8828	0.88280876	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	1	2	1	1	76.863	68.89	2;3	1.1239E-53	38057	160513_QHF_FH_JSI10Kac_6	202.13	168.94			1.0782	1.0441	5.9312	5	1	Median	1.2246	1.0441	NaN	1	0	Median	0.87196	1.0345	0.6952	2	1	Median	1.0782	1.0488	NaN	1	0	Median	1.1054	1.187	NaN	1	0	Median	940900000	485090000	455810000	156340000	64383000	91957000	634390000	350860000	283540000	86325000	37100000	49225000	63840000	32749000	31090000	49962	762	47031	301692;301693;301694;301695;301696	405550;405551;405552;405553	405552			3	
TFVVQGFGNVGLHSMR	0	Oxidation (M)	1763.8777	0.87772338	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	1	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		72.646	64.143	3	3.7477E-05	34135	160513_QHF_FH_JSI9Kac_6	89.669	71.566			0.93564	1.0548	24.462	3	0	Plateau	1.2352	1.0617	NaN	1	0	Median	0.91278	1.0548	NaN	1	0	Median	1.6361	1.6165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218950000	105650000	113290000	69749000	35190000	34560000	115510000	57724000	57791000	33681000	12739000	20943000	0	0	0	49963	762	47031	301697;301698;301699	405554;405555;405556;405557	405555		269	4	
TFWQSVSK	1	Unmodified	981.49198	0.4919813	5379	Q9UKT5	FBXO4	F-box only protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.379	39.281	2	0.003017	33475	160511_QHF_FH_JSI12i_3	82.452	30.665			0.50194	0.48128	8.7668	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.501	0.45236	NaN	1	1	Median	0.50288	0.51206	NaN	1	1	Median	153590000	88715000	64879000	0	0	0	0	0	0	52675000	31974000	20702000	100920000	56742000	44177000	49964	5379	47032	301700;301701	405558;405559	405559			2	
TFWSPELKK	2	Unmodified	1134.6073	0.6073454	3395	Q8IUD2;O15083	ERC1;ERC2	ELKS/Rab6-interacting/CAST family member 1;ERC protein 2	yes	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	48.539	47.925	3	3.7847E-05	40994	160511_QHF_FH_JSI12i_3	77.662	66.443			1.0095	1.022	29.344	3	1	Plateau	1.9932	1.6335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.472	1.4123	NaN	1	0	Median	0.92708	0.92828	NaN	1	0	Median	205850000	92221000	113630000	61442000	21995000	39448000	0	0	0	55263000	25074000	30188000	89149000	45152000	43998000	49965	3395	47033	301702;301703;301704	405560;405561;405562;405563;405564	405564			5	
TFYEDEMASHLDSK	1	Unmodified	1671.7087	0.70865195	5415	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		4									1	2	1	49.542	48.691	2;3	0.0020991	41977	160511_QHF_FH_JSI11i_2	58.577	50.663			1.0935	1.1028	13.271	4	2	Median	NaN	NaN	NaN	0	0	Median	0.79428	0.98605	NaN	1	0	Median	1.146	1.1028	10.525	2	2	Median	1.1498	1.3121	NaN	1	0	Median	200820000	100600000	100220000	0	0	0	48564000	25300000	23264000	98993000	47349000	51643000	53260000	27948000	25312000	49966	5415	47034	301705;301706;301707;301708	405565;405566;405567	405566			3	
TFYGLHQDFPSVVLVGLGK	1	Unmodified	2076.1044	0.10441208	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.4		2	5						4	3	3	2	3	96.659	93.597	2;3	8.342E-55	83346	160511_QHF_FH_JSI10i_3	221.91	207.44			1.073	0.99957	20.716	11	2	Median	1.2185	1.0229	20.643	3	0	Plateau	0.78861	0.88654	25.821	3	0	Plateau	1.0944	1.022	3.6108	2	1	Median	0.91257	0.9179	22.386	3	1	Median	3543100000	1770900000	1772300000	690020000	293290000	396730000	767690000	425440000	342250000	1157700000	557500000	600240000	927690000	494650000	433040000	49967	1313	47035	301709;301710;301711;301712;301713;301714;301715;301716;301717;301718;301719	405568;405569;405570;405571;405572;405573;405574;405575;405576;405577;405578;405579;405580;405581;405582;405583;405584;405585	405571			18	
TFYGLHQDFPSVVLVGLGKK	2	Unmodified	2204.1994	0.19937509	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		91.834	91.834	4	0.00035032	81820	160511_QHF_FH_JSI11i_3	52.814	43.767			0.8878	0.85054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8878	0.85054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30143000	16467000	13676000	0	0	0	0	0	0	30143000	16467000	13676000	0	0	0	49968	1313	47036	301720	405586	405586			1	
TFYLVLLQLQK	1	Unmodified	1364.8068	0.80677349	3771	Q8WUX9	CHMP7	Charged multivesicular body protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	1	2	2	94.594	87.422	2;3	6.2279E-15	47327	160513_QHF_FH_JSI9Kac_6	156.92	132.14			0.95947	0.90603	21.425	6	1	Median	0.84728	0.69758	19.931	2	0	Median	0.77866	0.89675	NaN	1	0	Median	0.95972	0.9154	NaN	1	0	Median	1.0081	1.0734	3.163	2	1	Median	787120000	372940000	414180000	168330000	82481000	85844000	182280000	105000000	77281000	307100000	126940000	180170000	129410000	58523000	70889000	49969	3771	47037	301721;301722;301723;301724;301725;301726;301727	405587;405588;405589;405590;405591;405592;405593;405594;405595;405596;405597	405591			10	
TFYLYTVNILSAAR	0	Unmodified	1630.8719	0.87189295	4441	Q9BUI4	POLR3C	DNA-directed RNA polymerase III subunit RPC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.649	82.34	2	2.2481E-16	44004	160513_QHF_FH_JSI12Kac_6	136.27	115.02			0.78995	0.83877	8.1877	4	1	Median	0.96657	0.82594	NaN	1	0	Median	0.74263	0.89389	NaN	1	0	Median	0.78535	0.73722	NaN	1	1	Median	0.79458	0.85181	NaN	1	0	Median	691180000	394270000	296910000	101020000	48603000	52414000	297420000	177530000	119900000	204310000	123370000	80948000	88426000	44769000	43658000	49970	4441	47038	301728;301729;301730;301731	405598;405599;405600;405601	405600			3	
TFYNLTTVALHDWATYSEMR	0	Unmodified	2418.1314	0.13143146	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		91.131	83.199	3	1.119E-34	46277	160513_QHF_FH_JSI11Kac_6	167.24	153.08			0.88055	0.85019	25.415	3	1	Median	0.88055	0.75185	NaN	1	0	Median	0.72405	0.85019	NaN	1	1	Median	1.2577	1.2255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	339800000	206180000	133620000	71981000	35289000	36692000	171860000	126000000	45858000	95961000	44890000	51071000	0	0	0	49971	2793	47039	301732;301733;301734	405602;405603;405604;405605	405602			4	
TFYNQAIMSSK	1	Unmodified	1288.6122	0.61217279	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1	2	3	2	2	45.971	44.991	2	2.5125E-07	38336	160511_QHF_FH_JSI12i_3	121.36	107.15			1.0826	1.066	59.207	8	6	Median	4.3709	3.6856	NaN	1	1	Median	0.48998	0.60821	47.672	3	3	Plateau	1.1645	1.1368	6.6401	2	1	Median	0.78922	0.8445	30.493	2	1	Median	807700000	432180000	375520000	10779000	2329000	8450000	152550000	98202000	54353000	287010000	140070000	146940000	357360000	191580000	165780000	49972	4852	47040	301735;301736;301737;301738;301739;301740;301741;301742;301743	405606;405607;405608;405609;405610;405611;405612;405613;405614;405615;405616	405615			11	
TFYQMYDK	1	Unmodified	1094.4743	0.47428232	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	41.278	40.591	2	0.00069356	35705	160511_QHF_FH_JSI10i_2	99.802	89.891			1.0104	0.94597	25.989	7	1	Median	1.0942	0.93188	NaN	1	0	Median	0.74214	0.89785	7.3833	2	0	Median	1.0944	1.0814	21.597	2	0	Median	1.3244	1.4325	32.246	2	1	Median	942280000	495500000	446780000	157510000	75480000	82025000	260610000	165190000	95420000	345050000	170220000	174830000	179110000	84604000	94505000	49973	4983	47041	301744;301745;301746;301747;301748;301749;301750	405617;405618;405619;405620;405621;405622;405623	405622			7	
TFYQMYDKGLVYR	1	Acetyl (K)	1724.8232	0.82322819	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		78.778	71.247	2	1.8138E-20	38366	160513_QHF_FH_JSI11Kac_6	159.94	131.93			1.297	1.3991	60.385	2	1	Median	NaN	NaN	NaN	0	0	Median	1.8098	2.1442	NaN	1	1	Median	0.92958	0.91284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22714000	9943900	12770000	0	0	0	11364000	3307900	8056300	11349000	6636100	4713300	0	0	0	49974	4983	47042	301751;301752;301753	405624;405625;405626	405624	3285		3	
TFYVQADSPEEMHSWIK	1	Unmodified	2066.9408	0.94077715	4835	Q9HB21	PLEKHA1	Pleckstrin homology domain-containing family A member 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.905	72.611	3	0.00043281	62929	160511_QHF_FH_JSI12i_3	63.691	58.481			1.7856	1.8089	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7856	1.8089	NaN	1	1	Median	41742000	15074000	26668000	0	0	0	0	0	0	0	0	0	41742000	15074000	26668000	49975	4835	47043	301754	405627	405627			1	
TFYYLEQLILK	1	Unmodified	1429.7857	0.7857037	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	2	3	1	1	95.038	88.492	2	1.3387E-09	46049	160513_QHF_FH_JSI12Kac_6	148.32	132.18			0.8966	0.86638	26.405	6	4	Median	1.0075	0.85684	NaN	1	0	Median	0.70844	0.87602	30.169	3	3	Median	1.4469	1.3657	NaN	1	1	Median	0.79789	0.84448	NaN	1	0	Median	906450000	501480000	404970000	158080000	74483000	83600000	304920000	164160000	140760000	155650000	77710000	77943000	287790000	185120000	102660000	49976	4021	47044	301755;301756;301757;301758;301759;301760;301761	405628;405629;405630;405631;405632;405633;405634	405632			7	
TGAAEGLAK	1	Unmodified	816.43413	0.43413207	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	11.818	11.373	2	0.022216	8912	160511_QHF_FH_JSI11i_1	41.876	20.329			1.2548	1.265	22.736	5	0	Median	1.4557	1.2122	19.557	2	0	Median	1.0791	1.265	NaN	1	0	Median	1.5287	1.4815	NaN	1	0	Median	0.82228	0.84623	NaN	1	0	Median	760820000	366150000	394670000	209590000	84395000	125200000	194670000	102090000	92580000	166030000	76182000	89847000	190530000	103480000	87045000	49977	4337	47045	301762;301763;301764;301765;301766	405635;405636	405635			2	
TGAAESQAGSGSAHK	1	Unmodified	1357.6222	0.6222202	5788				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.507	15.915	2	0.0031382	13372	160511_QHF_FH_JSI10i_1	57.019	37.233	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27558000	27558000	0	14016000	14016000	0	0	0	0	13542000	13542000	0	0	0	0	49978	5788	47046	301767;301768;301769;301770	405637;405638;405639;405640	405639			4	
TGAAGKFK	2	Acetyl (K)	820.4443	0.44430282	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.936					1	3	4	3		1	4	3	3	21.921	13.496	2	0.0057167	9784	160513_QHF_FH_JSI10Kac_4	84.568	68.414			0.81772	0.94671	126.51	11	1	Median	67.235	57.43	NaN	1	1	Median	0.77242	0.89812	11.572	4	0	Median	1.0182	0.98534	13.554	3	0	Median	0.69701	0.7675	4.4459	3	0	Median	1394400000	667580000	726780000	137350000	2451200	134900000	373210000	202500000	170710000	422080000	185630000	236450000	461710000	277000000	184710000	49979	1488	47047	301771;301772;301773;301774;301775;301776;301777;301778;301779;301780;301781	405641;405642;405643;405644;405645;405646;405647;405648;405649;405650;405651;405652;405653	405641	1499		13	
TGAAPAK	1	Unmodified	614.33878	0.33877512	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	4.7145	4.4005	2	0.01534	2271	160511_QHF_FH_JSI11i_1	64.803	36.697			1.2244	1.0897	39.686	4	0	Median	1.0361	0.83148	NaN	1	0	Median	1.5737	1.8593	NaN	1	0	Median	1.4468	1.4079	NaN	1	0	Median	0.79521	0.84338	NaN	1	0	Median	2126900000	1004300000	1122500000	256320000	121250000	135060000	548220000	223690000	324530000	690050000	280020000	410030000	632280000	379370000	252900000	49980	1465	47048	301782;301783;301784;301785	405654;405655	405654			2	
TGAAPIIDVVR	0	Unmodified	1110.6397	0.63970816	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.1	4	4	4			2	3	4		4	6	6	5	62.324	57.371	2	2.0908E-29	49554	160511_QHF_FH_JSI11i_2	183.67	126.63			0.95208	1.0685	20.489	21	0	Median	1.5918	1.3314	3.3999	4	0	Median	0.93202	1.1073	6.5433	6	0	Median	1.0444	1.0392	7.5075	6	0	Median	0.70467	0.75342	12.805	5	0	Median	16866000000	8113600000	8751900000	3878800000	1487200000	2391600000	4537000000	2218800000	2318200000	5201200000	2478300000	2722900000	3248600000	1929400000	1319200000	49981	1589	47049	301786;301787;301788;301789;301790;301791;301792;301793;301794;301795;301796;301797;301798;301799;301800;301801;301802;301803;301804;301805;301806	405656;405657;405658;405659;405660;405661;405662;405663;405664;405665;405666;405667;405668;405669;405670;405671;405672;405673;405674;405675;405676;405677;405678;405679;405680;405681;405682;405683;405684;405685;405686;405687;405688;405689;405690;405691	405681			36	
TGADTTAAGPLFQQRPYPSPGAVLR	0	Unmodified	2570.3241	0.32413469	451	O60828	PQBP1	Polyglutamine-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			73.955	72.496	3	4.1906E-17	59500	160511_QHF_FH_JSI9i_3	129.32	115.59			1.5564	1.2591	5.0094	3	3	Plateau	1.5011	1.2105	5.5653	2	2	Median	1.1435	1.2773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152240000	61248000	90992000	123140000	48496000	74643000	29100000	12752000	16348000	0	0	0	0	0	0	49982	451	47050	301807;301808;301809;301810	405692;405693;405694;405695	405694			4	
TGAEGAVLDEAK	1	Unmodified	1159.5721	0.57208211	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.557	29.958	2	1.1243E-22	26872	160511_QHF_FH_JSI12i_1	199.68	163.3			0.94464	0.99326	15.439	4	0	Median	1.2164	1.0163	NaN	1	0	Median	0.83408	0.97069	NaN	1	0	Median	1.0699	1.0371	NaN	1	0	Median	0.69743	0.74369	NaN	1	0	Median	1300100000	643850000	656220000	208340000	79064000	129280000	373450000	189550000	183890000	371430000	175200000	196230000	346860000	200030000	146830000	49983	1400	47051	301811;301812;301813;301814	405696;405697;405698;405699;405700;405701	405698			6	
TGAELVTCGSVLK	1	Unmodified	1333.6912	0.69115139	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	1	2	2	51.651	50.834	2	8.861E-05	45950	160511_QHF_FH_JSI11i_1	96.756	88.52			0.83332	0.75765	28.804	5	0	Median	0.91268	0.74329	NaN	1	0	Median	0.65094	0.75234	NaN	1	0	Median	0.77033	0.75765	NaN	1	0	Median	1.0677	1.1363	35.487	2	0	Median	370480000	194500000	175980000	34873000	21021000	13852000	98633000	55862000	42771000	116750000	60260000	56495000	120220000	57354000	62863000	49984	4862	47052	301815;301816;301817;301818;301819;301820	405702;405703;405704;405705	405702			3	
TGAFALPILNALLETPQR	0	Unmodified	1924.0782	0.078197327	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			102.85	102.72	2	3.0347E-11	85338	160511_QHF_FH_JSI10i_3	162.97	138.68			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20948000	20948000	0	0	0	0	20948000	20948000	0	0	0	0	0	0	0	49985	4640	47053	301821	405706	405706			1	
TGAFSIPVIQIVYETLK	1	Unmodified	1878.0503	0.050251242	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	6.23		8	8						7	5	7	5	6	102.35	99.762	2;3	7.0986E-52	85838	160511_QHF_FH_JSI10i_3	212.17	179.08			0.95565	1.0206	22.967	23	6	Median	1.4974	1.2653	12.112	5	0	Median	0.88482	1.0361	12.179	7	3	Median	1.1115	1.0531	4.4904	5	1	Median	0.67522	0.70054	14.216	6	2	Median	3237900000	1659500000	1578400000	325250000	127390000	197870000	654860000	316300000	338560000	939280000	444430000	494860000	1318500000	771340000	547160000	49986	3828	47054	301822;301823;301824;301825;301826;301827;301828;301829;301830;301831;301832;301833;301834;301835;301836;301837;301838;301839;301840;301841;301842;301843;301844	405707;405708;405709;405710;405711;405712;405713;405714;405715;405716;405717;405718;405719;405720;405721;405722;405723;405724;405725;405726;405727;405728;405729;405730;405731;405732;405733;405734;405735;405736;405737;405738;405739;405740;405741	405715			35	
TGAIVDVPVGEELLGR	0	Unmodified	1623.8832	0.88318591	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							4	2	2	2	87.789	87.193	2;3	8.2481E-08	76785	160511_QHF_FH_JSI9i_2	139.78	126.58			0.90153	0.92691	59.292	9	4	Median	2.9298	2.419	2.5955	3	1	Plateau	0.50603	0.6029	5.9656	2	1	Median	0.79631	0.80249	4.9312	2	1	Median	0.98794	1.0461	17.108	2	1	Median	449430000	222390000	227030000	122980000	31754000	91226000	135400000	87741000	47656000	98322000	54216000	44106000	92726000	48680000	44047000	49987	1263	47055	301845;301846;301847;301848;301849;301850;301851;301852;301853;301854	405742;405743;405744;405745;405746;405747;405748;405749;405750;405751;405752	405749			11	
TGALLLQGFIQDR	0	Unmodified	1430.7882	0.78816332	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	3	3	1	2	86.857	83.849	2	1.9154E-15	73012	160511_QHF_FH_JSI10i_3	162.68	126.74			0.8625	0.91691	22.823	9	1	Median	1.3446	1.1015	8.1134	3	1	Plateau	0.66274	0.76356	10.859	3	0	Median	1.0909	1.0183	NaN	1	0	Median	0.64194	0.67773	38.373	2	0	Median	425160000	221780000	203370000	136280000	56240000	80037000	202630000	120070000	82563000	45174000	21599000	23574000	41074000	23873000	17201000	49988	2256	47056	301855;301856;301857;301858;301859;301860;301861;301862;301863	405753;405754;405755;405756;405757;405758;405759;405760;405761;405762;405763;405764;405765	405757			12	
TGAPAQADSR	0	Unmodified	972.46247	0.46247208	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.5307	6.1963	2	0.00034993	4211	160511_QHF_FH_JSI12i_1	77.288	62.506			1.0368	1.1102	31.455	4	1	Median	1.5036	1.2338	NaN	1	0	Median	0.88415	1.0351	NaN	1	1	Median	1.2159	1.1907	NaN	1	0	Median	0.59547	0.62448	NaN	1	0	Median	484350000	237210000	247140000	122970000	48286000	74685000	135720000	70584000	65140000	104060000	52859000	51198000	121600000	65477000	56120000	49989	1172	47057	301864;301865;301866;301867	405766;405767;405768;405769;405770;405771	405768			6	
TGAPCRSER	0	Unmodified	1032.4771	0.47707629	854;1044;922	P06733;P09104;P13929	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	no	no	0	0	0	1		By MS/MS			2	0		1									1			4.8009	4.3939	3	0.016449	2396	160511_QHF_FH_JSI10i_2	33.229	12.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49990	854;922;1044	47058	301868	405772	405772			1	
TGAPQYGSYGTAPVNLNIK	1	Unmodified	1949.9847	0.98469087	3143	Q6UN15	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	65.619	65.077	2;3	4.4805E-55	59298	160511_QHF_FH_JSI12i_1	211.13	191.03			0.81653	0.86326	18.678	6	1	Median	1.3659	1.1338	NaN	1	0	Median	0.7402	0.85423	12.392	2	1	Median	0.89805	0.87806	13.31	2	0	Median	0.62712	0.6672	NaN	1	0	Median	302510000	163390000	139120000	57359000	24542000	32818000	85678000	44806000	40872000	98544000	56475000	42069000	60928000	37569000	23359000	49991	3143	47059	301869;301870;301871;301872;301873;301874	405773;405774;405775;405776;405777;405778;405779	405777			7	
TGASFQK	1	Unmodified	737.3708	0.37080353	210	O14828	SCAMP3	Secretory carrier-associated membrane protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	10.011	9.6602	2	0.037218	7260	160511_QHF_FH_JSI12i_2	48.756	30.77			0.87277	0.94027	42.958	6	1	Median	0.49187	0.42253	NaN	1	1	Median	1.0697	1.271	NaN	1	0	Median	0.9262	0.92657	47.65	2	0	Median	0.87277	0.94027	10.498	2	0	Median	994600000	524190000	470410000	179850000	114030000	65813000	228040000	108020000	120020000	305710000	148770000	156930000	281010000	153360000	127650000	49992	210	47060	301875;301876;301877;301878;301879;301880	405780;405781;405782	405780			3	
TGASFQQAQEEFSQGIFSSR	0	Unmodified	2204.0134	0.013424818	253	O15127	SCAMP2	Secretory carrier-associated membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							1	2	4		83.212	82.842	2;3	1.0319E-32	73036	160511_QHF_FH_JSI9i_2	225.67	204.71			0.99475	0.9418	27.479	4	1	Median	1.6822	1.4628	NaN	1	0	Median	0.67102	0.79058	NaN	1	1	Median	0.99475	0.9418	14.008	2	0	Median	NaN	NaN	NaN	0	0	Median	123770000	58288000	65484000	27201000	12225000	14976000	16756000	10787000	5968800	79815000	35275000	44539000	0	0	0	49993	253	47061	301881;301882;301883;301884;301885;301886;301887	405783;405784;405785;405786;405787;405788;405789;405790;405791	405787			9	
TGASVLNK	1	Unmodified	788.43922	0.43921744	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1			1	2	1	1	16.701	14.211	2	0.0012164	11908	160511_QHF_FH_JSI9i_2	92.47	51.55			0.81787	0.84664	15.507	4	0	Median	1.057	0.90308	NaN	1	0	Median	0.54809	0.67787	NaN	1	0	Median	0.96765	0.96297	NaN	1	0	Median	0.69128	0.79373	NaN	1	0	Median	420370000	257460000	162910000	152510000	82605000	69905000	113200000	70905000	42296000	18795000	10467000	8328300	135860000	93488000	42376000	49994	3828	47062	301888;301889;301890;301891;301892	405792;405793;405794;405795;405796;405797;405798	405797			7	
TGASWTDNIMAQK	1	Unmodified	1421.6609	0.66091389	3288	Q7Z6K5	ARPIN	Arpin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	53.928	53.429	2	0.011694	48533	160511_QHF_FH_JSI12i_1	46.796	31.53			0.91748	0.95651	26.027	4	0	Median	NaN	NaN	NaN	0	0	Median	0.52423	0.6161	NaN	1	0	Median	1.0565	1.0497	10.377	2	0	Median	0.87977	0.93796	NaN	1	0	Median	178530000	95489000	83036000	0	0	0	46972000	30731000	16240000	88492000	39374000	49117000	43062000	25384000	17678000	49995	3288	47063	301893;301894;301895;301896	405799;405800;405801	405800			1	
TGASYYGEQTLHYIATNGESAVVQLPK	1	Unmodified	2896.4243	0.42430225	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	4	3	90.638	90.378	3;4	2.5878E-49	80164	160511_QHF_FH_JSI10i_2	187.29	175.97			0.90086	0.91437	17.343	9	2	Median	1.1848	1.057	NaN	1	0	Median	0.73961	0.88803	NaN	1	0	Median	1.0581	1.0223	14.849	4	2	Median	0.6652	0.71262	13.682	3	0	Plateau	370420000	188050000	182370000	36171000	14820000	21351000	53080000	28326000	24754000	160250000	74281000	85969000	120920000	70621000	50295000	49996	4535	47064	301897;301898;301899;301900;301901;301902;301903;301904;301905	405802;405803;405804;405805;405806;405807;405808;405809;405810;405811;405812;405813;405814;405815;405816	405812			15	
TGAYQYTIR	0	Unmodified	1071.5349	0.53490874	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	7	6.2		4	1					3		1	2	2	3	33.607	28.874	2	0.00072092	24378	160511_QHF_FH_JSI11i_2	75.378	51.61			0.9208	1.0171	28.653	7	0	Median	1.9171	1.6063	NaN	1	0	Median	0.91253	1.0894	2.1646	2	0	Median	1.0275	1.0079	1.2964	2	0	Median	0.69583	0.75177	30.154	2	0	Median	305190000	144460000	160730000	74419000	28923000	45497000	79608000	42331000	37277000	87101000	38954000	48147000	64063000	34257000	29806000	49997	3734	47065	301906;301907;301908;301909;301910;301911;301912;301913	405817;405818;405819;405820;405821;405822;405823	405819			7	
TGCELGDGPDTK	1	Unmodified	1248.5292	0.52923102	531	O75459	PAGE1	P antigen family member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	17.086	16.81	2	6.3789E-05	14121	160511_QHF_FH_JSI11i_1	107.06	87.961			0.6826	0.66443	146.77	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0087	1.1813	NaN	1	1	Median	0.6826	0.66443	NaN	1	1	Median	0.069138	0.073246	NaN	1	1	Median	944080000	844510000	99564000	0	0	0	68558000	38218000	30340000	74457000	44353000	30104000	801060000	761940000	39121000	49998	531	47066	301914;301915;301916	405824;405825;405826	405824			3	
TGCIGAK	1	Unmodified	705.34796	0.34795959	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.866	3	2	3							1	2	3	2	6.7696	6.5493	2	0.012437	4439	160511_QHF_FH_JSI10i_1	69.383	28.081			0.99098	1.0345	17.674	8	0	Median	1.1681	1.0212	NaN	1	0	Median	1.0155	1.1847	11.365	2	0	Median	0.89961	0.86052	19.625	3	0	Median	0.99098	1.0345	0.029268	2	0	Median	3388300000	1819200000	1569200000	125110000	55348000	69759000	973270000	529040000	444230000	1360000000	731230000	628770000	929940000	503540000	426400000	49999	2038	47067	301917;301918;301919;301920;301921;301922;301923;301924	405827;405828;405829;405830;405831;405832;405833;405834	405833			8	
TGCIGAKHR	1	Acetyl (K)	1040.5185	0.51854717	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		11.013	2.9287	3	0.00133	4116	160513_QHF_FH_JSI10Kac_6	66.962	57.374			0.7024	0.74455	178.4	2	0	Median	NaN	NaN	NaN	0	0	Median	2.2773	2.6287	NaN	1	0	Median	0.21665	0.21088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37369000	22608000	14760000	0	0	0	15931000	5380400	10550000	21438000	17228000	4210100	0	0	0	50000	2038	47068	301925;301926	405835;405836	405836	2090		2	
TGCNVLLIQK	1	Unmodified	1144.6274	0.62742892	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.92	6.22	2	3				2	2	3			4	4	4	52.434	46.098	2	1.0078E-07	39311	160511_QHF_FH_JSI12i_2	122.28	113.96			0.79596	0.92311	50.986	12	2	Median	NaN	NaN	NaN	0	0	Median	0.87173	1.0322	16.007	4	0	Median	0.74315	0.73936	71.375	4	2	Median	0.44824	0.48315	62.681	4	0	Linear	894840000	514340000	380500000	0	0	0	142900000	79724000	63174000	382350000	202870000	179480000	369590000	231740000	137850000	50001	1722	47069	301927;301928;301929;301930;301931;301932;301933;301934;301935;301936;301937;301938	405837;405838;405839;405840;405841;405842;405843;405844;405845;405846;405847;405848;405849;405850;405851;405852	405839			16	
TGDAISVMSEVAQTLLTQDVR	0	Unmodified	2233.126	0.12601173	4329	Q99943	AGPAT1	1-acyl-sn-glycerol-3-phosphate acyltransferase alpha	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.87	102.82	3	0.00017694	91391	160511_QHF_FH_JSI10i_2	33.171	25.02			0.65742	0.81637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65742	0.81637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24115000	13858000	10257000	0	0	0	24115000	13858000	10257000	0	0	0	0	0	0	50002	4329	47070	301939	405853	405853			1	
TGDETELHSSEK	1	Unmodified	1331.5841	0.58410336	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By matching			1	0	2									1	1			8.7333	8.2731	3	0.027605	5855	160511_QHF_FH_JSI9i_1	23.143	11.61			1.7354	1.7235	53.755	2	0	Median	2.9839	2.5205	NaN	1	0	Median	1.0093	1.1785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87198000	37214000	49983000	30247000	8813000	21434000	56950000	28401000	28549000	0	0	0	0	0	0	50003	3653	47071	301940;301941	405854	405854			1	
TGDFQLHTNVNDGTEFGGSIYQK	1	Unmodified	2527.1615	0.16154562	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.68	3	8	4							2	5	4	4	65.895	65.108	2;3	1.2406E-122	57337	160511_QHF_FH_JSI9i_2	275.2	258.05			0.95014	1.0537	22.684	14	1	Median	1.3666	1.1402	7.5501	2	0	Median	0.84195	1.0136	17.059	4	1	Median	1.1237	1.2026	6.793	4	0	Linear	0.64697	0.68915	10.376	4	0	Median	3739200000	1920500000	1818700000	523830000	230450000	293380000	880700000	449830000	430860000	1207300000	559090000	648230000	1127300000	681100000	446230000	50004	1570	47072	301942;301943;301944;301945;301946;301947;301948;301949;301950;301951;301952;301953;301954;301955;301956	405855;405856;405857;405858;405859;405860;405861;405862;405863;405864;405865;405866;405867;405868;405869;405870;405871;405872;405873;405874;405875;405876;405877;405878;405879;405880;405881;405882;405883;405884;405885;405886;405887;405888;405889;405890;405891;405892;405893;405894;405895;405896	405877			42	
TGDLGDINAEQLPGR	0	Unmodified	1554.7638	0.76379906	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	55.064	54.151	2	7.2915E-07	48087	160511_QHF_FH_JSI9i_1	131.35	106.14			0.92149	0.85672	55.447	2	1	Median	1.542	1.268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55069	0.57885	NaN	1	0	Median	96701000	53546000	43155000	54329000	24080000	30249000	0	0	0	0	0	0	42372000	29466000	12906000	50005	5495	47073	301957;301958	405897;405898	405898			2	
TGDLGDINAEQLPGREHLNEPGTR	0	Unmodified	2588.2579	0.25790562	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		53.921	53.433	3;4	4.4905E-23	47384	160511_QHF_FH_JSI11i_3	142.32	117.67			1.2054	1.2119	21.309	4	1	Median	1.5291	1.3423	NaN	1	0	Median	1.2034	1.4484	NaN	1	0	Median	1.0846	0.99369	13.633	2	1	Median	NaN	NaN	NaN	0	0	Median	350770000	185790000	164970000	99399000	39839000	59561000	42446000	23985000	18461000	208920000	121970000	86952000	0	0	0	50006	5495	47074	301959;301960;301961;301962	405899;405900;405901;405902;405903;405904;405905;405906	405901			8	
TGDPQETLR	0	Unmodified	1015.4934	0.49343786	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	14.7	14.422	2	0.051719	12205	160511_QHF_FH_JSI12i_1	35.445	6.2833			0.84904	0.85835	37.353	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1691	1.1178	NaN	1	0	Median	0.61661	0.65911	NaN	1	0	Median	77405000	34291000	43114000	0	0	0	0	0	0	40090000	14559000	25531000	37315000	19732000	17583000	50007	2587	47075	301963;301964	405907	405907			1	
TGDQQEETMPTK	1	Unmodified	1363.5926	0.59255956	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.547	14.105	2	5.0786E-06	11654	160511_QHF_FH_JSI10i_1	122.7	103.61			0.72152	0.74944	64.227	4	3	Median	0.6176	0.50722	NaN	1	1	Median	0.84294	0.98102	NaN	1	1	Median	2.1997	2.0769	NaN	1	1	Median	0.54084	0.57253	NaN	1	0	Median	171540000	93057000	78484000	24124000	15123000	9000800	39838000	25217000	14621000	64833000	27110000	37722000	42746000	25607000	17140000	50008	429	47076	301965;301966;301967;301968	405908;405909;405910;405911;405912	405911			5	
TGDTGMLPANYVEAI	0	Unmodified	1550.7287	0.72865911	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		90.653	90.293	2	0.0003794	82318	160511_QHF_FH_JSI11i_1	94.66	85.93			1.5298	1.4584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5298	1.4584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	325760000	154290000	171470000	0	0	0	0	0	0	325760000	154290000	171470000	0	0	0	50009	2579	47077	301969	405913	405913			1	
TGDVEDSTVLK	1	Unmodified	1162.5717	0.57174776	5442	Q9UNN5	FAF1	FAS-associated factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	29.788	29.192	2	4.8648E-07	25413	160511_QHF_FH_JSI9i_1	115.7	96.428			0.60276	0.65477	18.402	4	3	Median	0.84569	0.69812	NaN	1	0	Median	0.50498	0.61411	NaN	1	1	Median	0.71948	0.7126	NaN	1	1	Median	0.46439	0.47761	NaN	1	1	Median	894440000	618290000	276150000	217560000	138570000	78995000	285740000	206230000	79510000	201360000	122910000	78452000	189780000	150590000	39189000	50010	5442	47078	301970;301971;301972;301973;301974	405914;405915;405916;405917;405918;405919	405918			6	
TGEAETITSHYLFALGVYR	0	Unmodified	2127.0637	0.063669474	1244	P24390	KDELR1	ER lumen protein-retaining receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	85.706	77.446	3	1.7248E-34	42264	160513_QHF_FH_JSI9Kac_6	169.43	156.2			0.92273	0.97771	47.204	4	0	Median	1.6975	1.4851	NaN	1	0	Median	0.68006	0.81342	NaN	1	0	Median	1.252	1.1752	NaN	1	0	Median	0.46995	0.50321	NaN	1	0	Median	1384600000	706070000	678560000	325130000	120670000	204460000	554420000	322560000	231860000	367440000	163730000	203700000	137640000	99103000	38537000	50011	1244	47079	301975;301976;301977;301978	405920;405921;405922	405921			3	
TGEAETITTHYLFFLGLYR	0	Unmodified	2231.1263	0.12626973	1407;367	P33947;O43731	KDELR2;KDELR3	ER lumen protein-retaining receptor 2;ER lumen protein-retaining receptor 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.79	85.419	3	2.1728E-34	50040	160513_QHF_FH_JSI10Kac_6	167.92	158.39			0.96019	1.0168	29.131	4	0	Median	1.646	1.3783	NaN	1	0	Median	0.74251	0.88809	NaN	1	0	Median	1.2417	1.1643	NaN	1	0	Median	0.67715	0.71293	NaN	1	0	Median	754450000	385190000	369260000	194840000	82938000	111900000	314760000	183130000	131630000	176330000	79488000	96846000	68514000	39632000	28883000	50012	1407;367	47080	301979;301980;301981;301982	405923;405924;405925;405926;405927	405927			5	
TGEAIVDAALSALR	0	Unmodified	1385.7514	0.75144346	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.81	2.82	4	8	8					1		4	6	6	5	95.426	94.609	2;3	4.0522E-30	83799	160511_QHF_FH_JSI11i_2	231.7	217.5			0.99015	1.0158	16.242	21	0	Median	1.4768	1.2729	13.189	4	0	Median	0.83638	0.99981	9.6633	6	0	Median	1.1018	1.0945	7.5209	6	0	Median	0.74041	0.80899	8.8868	5	0	Median	3534400000	1794500000	1739800000	606180000	244470000	361710000	836350000	443420000	392940000	1271300000	601450000	669870000	820500000	505210000	315300000	50013	2628	47081	301983;301984;301985;301986;301987;301988;301989;301990;301991;301992;301993;301994;301995;301996;301997;301998;301999;302000;302001;302002;302003	405928;405929;405930;405931;405932;405933;405934;405935;405936;405937;405938;405939;405940;405941;405942;405943;405944;405945;405946;405947;405948;405949;405950;405951;405952;405953;405954;405955;405956;405957;405958;405959;405960;405961;405962;405963;405964;405965;405966;405967;405968;405969;405970;405971;405972;405973	405963			46	
TGEAYVQFEEPEMANQALLK	1	Unmodified	2267.078	0.07799891	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	82.618	82.213	2;3	1.2467E-17	74499	160511_QHF_FH_JSI10i_1	176.75	155.19			1.4855	1.5742	55.483	5	4	Median	5.3721	4.4628	NaN	1	1	Median	1.0693	1.2638	8.4662	2	1	Median	2.9658	2.7505	NaN	1	1	Median	1.4855	1.5742	NaN	1	1	Median	372170000	173610000	198550000	38224000	7014300	31210000	205620000	116040000	89574000	68448000	26264000	42184000	59876000	24290000	35587000	50014	2314	47082	302004;302005;302006;302007;302008	405974;405975;405976;405977;405978;405979	405977			6	
TGEDEDEEDNDALLK	1	Unmodified	1691.701	0.70098361	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.653	34.047	2	2.3413E-21	30588	160511_QHF_FH_JSI12i_1	174.84	159.27			1.1448	1.0636	19.754	4	0	Median	1.1409	0.94924	NaN	1	0	Median	1.2449	1.4869	NaN	1	0	Median	1.1487	1.113	NaN	1	0	Median	0.99161	1.0164	NaN	1	0	Median	229580000	105360000	124210000	45104000	17330000	27774000	53966000	27356000	26610000	60304000	26766000	33538000	70201000	33914000	36288000	50015	4076	47083	302009;302010;302011;302012	405980;405981;405982;405983;405984;405985;405986	405982			7	
TGEEDEEEFFCNR	0	Unmodified	1660.6311	0.63112991	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	46.721	46.223	2	2.4807E-10	41761	160511_QHF_FH_JSI11i_1	147.91	147.91			0.90749	1.0545	19.816	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90749	1.0545	NaN	1	0	Median	0.84805	0.80895	NaN	1	0	Median	1.1645	1.1921	NaN	1	0	Median	149700000	84658000	65038000	0	0	0	69512000	35080000	34431000	47123000	32780000	14343000	33061000	16798000	16263000	50016	1685	47084	302013;302014;302015	405987;405988;405989;405990;405991	405987			5	
TGEEIFGTIGMRPNAK	1	Unmodified	1719.8614	0.86140461	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	4	3	59.134	58.457	2;3	4.7095E-39	51374	160511_QHF_FH_JSI9i_2	198.55	163.66			0.96936	1.1222	21.072	12	1	Median	1.4108	1.221	10.173	2	0	Median	0.96987	1.1862	4.7715	3	1	Median	1.0311	1.0225	18.23	4	0	Median	0.71903	0.73703	16.402	3	0	Median	3656700000	1805300000	1851400000	606960000	276230000	330730000	775040000	448020000	327030000	1848000000	838780000	1009200000	426720000	242280000	184440000	50017	4325	47085	302016;302017;302018;302019;302020;302021;302022;302023;302024;302025;302026;302027	405992;405993;405994;405995;405996;405997;405998;405999;406000;406001;406002;406003;406004;406005;406006;406007;406008;406009	406000			18	
TGEEIFGTIGMRPNAK	1	Oxidation (M)	1735.8563	0.85631924	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		49.164	48.269	3	7.9131E-05	42675	160511_QHF_FH_JSI11i_3	93.424	77.025			0.82782	1.3088	23.32	4	1	Linear	1.4832	1.2507	NaN	1	0	Median	0.95753	1.1284	37.019	2	0	Median	1.421	1.3696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	376600000	167500000	209100000	61388000	29855000	31532000	144520000	68407000	76117000	170690000	69238000	101450000	0	0	0	50018	4325	47085	302028;302029;302030;302031	406010;406011;406012	406010		2454	3	
TGEEINFGK	1	Unmodified	993.47673	0.47672516	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		32.343	31.731	2	0.00078001	27833	160511_QHF_FH_JSI9i_1	85.38	43.54			0.69945	0.81445	49.52	3	3	Plateau	2.6296	2.1903	NaN	1	1	Median	0.69945	0.81445	NaN	1	1	Median	1.3215	1.2817	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	479570000	194150000	285420000	143070000	52884000	90184000	169220000	80056000	89165000	167280000	61211000	106070000	0	0	0	50019	1695	47086	302032;302033;302034	406013;406014;406015	406015			3	
TGEEKYVEESK	2	Acetyl (K)	1339.6143	0.61434085	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	12.5	0.5					1	1					1		1	30.376	22.12	2	0.015326	13201	160513_QHF_FH_JSI12Kac_3	61.344	56.142			0.31373	0.34655	185.79	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1432	1.2892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.086096	0.093158	NaN	1	1	Median	3754300	2460000	1294400	0	0	0	1961800	766000	1195800	0	0	0	1792600	1694000	98620	50020	655	47087	302035;302036	406016;406017	406017	325		2	
TGEGEECEEQK	1	Unmodified	1294.4983	0.49832482	5789				yes	yes	0	0	0	0	By MS/MS				1	0	2									2				28.244	26.976	2	7.6735E-05	23382	160511_QHF_FH_JSI9i_1	91.069	27.589	+		2.0173	1.6467	0	2	0	Median	2.0173	1.6467	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1219500000	502050000	717420000	1219500000	502050000	717420000	0	0	0	0	0	0	0	0	0	50021	5789	47088	302037;302038	406018	406018			1	
TGEGFLCVFAINNSK	1	Unmodified	1655.7977	0.79774172	785	P01111	NRAS	GTPase NRas	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		88.72	88.72	2	0.0037832	79257	160511_QHF_FH_JSI11i_3	63.662	54.708			2.0486	1.9022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0486	1.9022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50992000	18291000	32700000	0	0	0	0	0	0	50992000	18291000	32700000	0	0	0	50022	785	47089	302039	406019	406019			1	
TGEGFLCVFAINNTK	1	Unmodified	1669.8134	0.81339179	786	P01116	KRAS	GTPase KRas;GTPase KRas, N-terminally processed	no	no	0	0	0	0				By MS/MS	3	0			1										1	90	89.912	3	0.0097066	78035	160511_QHF_FH_JSI12i_3	45.614	35.814			1.7185	1.8691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7185	1.8691	NaN	1	1	Median	7113600	2845500	4268200	0	0	0	0	0	0	0	0	0	7113600	2845500	4268200	50023	786	47090	302040	406020	406020			1	
TGEGFYKYK	2	Acetyl (K)	1133.5393	0.53932542	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.045	36.605	2	0.0011172	21740	160513_QHF_FH_JSI11Kac_4	90.15	70.16			0.33778	0.3344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33778	0.3344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18036000	10873000	7162300	0	0	0	0	0	0	18036000	10873000	7162300	0	0	0	50024	2770	47091	302041	406021	406021	2675		1	
TGEITASSNK	1	Unmodified	1006.4931	0.49310351	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	9.1146	6.4296	2	3.8934E-06	5806	160511_QHF_FH_JSI11i_1	135.86	74.185			0.84888	0.9069	20.146	6	0	Median	1.7508	1.4596	NaN	1	0	Median	0.75332	0.9069	0.56611	2	0	Median	0.94891	0.94424	11.742	2	0	Median	0.81825	0.86371	NaN	1	0	Median	942280000	461110000	481170000	211980000	66521000	145460000	276010000	136360000	139650000	238580000	124250000	114330000	215710000	133980000	81729000	50025	3686	47092	302042;302043;302044;302045;302046;302047	406022;406023;406024;406025;406026;406027	406022			6	
TGELGYLNPGVFTQSR	0	Unmodified	1737.8686	0.86859848	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		79.279	78.588	2	1.2925E-10	69919	160511_QHF_FH_JSI10i_2	151.78	103.78			1.0689	0.96521	6.1223	3	0	Median	1.1574	0.96521	NaN	1	0	Median	0.77401	0.94525	NaN	1	0	Median	1.0689	1.0604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128780000	62888000	65888000	35327000	15798000	19530000	39171000	20166000	19004000	54278000	26924000	27354000	0	0	0	50026	1476	47093	302048;302049;302050	406028;406029;406030;406031;406032;406033;406034	406033			7	
TGEMSGPVFTDSGIHIILR	0	Oxidation (M)	2045.0252	0.025175478	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	77.492	77.359	3	0.0047149	69064	160511_QHF_FH_JSI11i_3	40.614	32.393			0.70843	0.67246	13.304	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82566	0.73879	NaN	1	0	Median	0.60784	0.61209	NaN	1	1	Median	99665000	50055000	49610000	0	0	0	0	0	0	47885000	21426000	26459000	51780000	28629000	23150000	50027	2433	47094	302051;302052	406035;406036	406035		1953	2	
TGEMSGPVFTDSGIHIILR	0	Unmodified	2029.0303	0.030260856	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	85.518	85.036	2;3	7.0361E-11	75868	160511_QHF_FH_JSI11i_3	132.47	112.01			0.91527	0.92186	14.171	6	0	Median	1.2516	1.0736	NaN	1	0	Median	0.69649	0.84728	NaN	1	0	Median	1.0829	1.0505	6.5381	2	0	Median	0.76572	0.81147	0.86543	2	0	Median	443780000	237530000	206250000	38831000	14478000	24353000	43502000	25576000	17926000	163160000	83374000	79787000	198280000	114100000	84183000	50028	2433	47094	302053;302054;302055;302056;302057;302058;302059	406037;406038;406039;406040;406041;406042;406043;406044;406045	406039			9	
TGENVEDAFLEAAK	1	Unmodified	1492.7046	0.70455285	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	69.093	68.303	2	1.3836E-52	60678	160511_QHF_FH_JSI9i_1	195.77	176.99			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50029	1938	47095	302060;302061	406046;406047	406047			2	
TGENVEDAFLEAAKK	2	Unmodified	1620.7995	0.79951586	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	1	2	63.026	62.317	2;3	0.00024882	53677	160511_QHF_FH_JSI12i_2	70.41	58.028			1.0203	0.87102	15.418	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0203	1.1856	NaN	1	0	Median	1.0837	1.0134	NaN	1	0	Median	0.78648	0.87102	NaN	1	0	Median	303310000	157630000	145680000	0	0	0	49335000	26347000	22988000	50535000	26051000	24484000	203440000	105240000	98204000	50030	1938	47096	302062;302063;302064;302065	406048;406049;406050;406051;406052	406050			5	
TGESQNQLAVDQIAFQK	1	Unmodified	1875.9327	0.9326553	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	61.886	60.8	2	4.7743E-08	54018	160511_QHF_FH_JSI9i_1	131.53	117.11			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4261900	0	4261900	4261900	0	4261900	0	0	0	0	0	0	0	0	0	50031	4530	47097	302066;302067	406053;406054	406054			2	
TGESTVLSSIPLPSDDFK	1	Unmodified	1891.9415	0.94148865	4886	Q9NP74	PALMD	Palmdelphin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		91.815	91.415	2	2.4609E-23	82818	160511_QHF_FH_JSI10i_1	132.59	116.45			1.0583	1.0959	4.501	3	1	Median	1.2868	1.0974	NaN	1	0	Median	0.96577	1.0959	NaN	1	0	Median	1.0583	1.0144	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	93247000	45538000	47709000	28494000	11436000	17058000	31663000	17990000	13674000	33089000	16112000	16977000	0	0	0	50032	4886	47098	302068;302069;302070;302071	406055;406056;406057;406058;406059;406060;406061;406062	406060			8	
TGETMIQWSQFK	1	Unmodified	1454.6864	0.68640036	5118	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	69.657	68.358	2	7.8783E-05	58874	160511_QHF_FH_JSI12i_2	105.46	89.322			0.83448	0.89908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83448	0.89908	NaN	1	1	Median	42743000	23947000	18796000	0	0	0	0	0	0	0	0	0	42743000	23947000	18796000	50033	5118	47099	302072	406063	406063			1	
TGETVVEEMIATR	0	Unmodified	1434.7024	0.70244436	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.081	66.781	2	0.00070059	57552	160511_QHF_FH_JSI12i_2	83.045	65.572			0.60842	0.6719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60842	0.6719	NaN	1	1	Median	19981000	10394000	9587300	0	0	0	0	0	0	0	0	0	19981000	10394000	9587300	50034	3849	47100	302073	406064	406064			1	
TGEYPVPLIR	0	Unmodified	1143.6288	0.62880913	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	63.452	59.955	2	2.517E-07	54390	160511_QHF_FH_JSI11i_1	123.72	123.72			0.99032	1.1475	23.207	11	3	Median	1.8228	1.5365	17.312	2	1	Median	0.93443	1.1021	7.0044	3	1	Median	1.2298	1.249	5.5225	3	1	Median	0.79763	0.80533	7.6778	3	0	Plateau	1956100000	885470000	1070600000	376020000	136910000	239100000	458700000	230670000	228030000	650050000	300680000	349370000	471330000	217200000	254130000	50035	997	47101	302074;302075;302076;302077;302078;302079;302080;302081;302082;302083;302084	406065;406066;406067;406068;406069;406070;406071;406072;406073;406074;406075;406076;406077;406078	406066			14	
TGFAEGFLK	1	Unmodified	968.49673	0.49673232	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		60.433	59.747	2	0.0018761	53031	160511_QHF_FH_JSI10i_2	76.1	54.249			2.7231	3.0022	11.676	2	2	Median	NaN	NaN	NaN	0	0	Median	2.6966	3.2606	NaN	1	1	Median	2.7498	2.7643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	316010000	77270000	238740000	0	0	0	116410000	30349000	86065000	199590000	46921000	152670000	0	0	0	50036	4261	47102	302085;302086	406079;406080	406080			2	
TGFFEFQAAK	1	Unmodified	1144.5553	0.55530983	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	65.904	65.103	2	6.6028E-11	57642	160511_QHF_FH_JSI11i_3	145.17	130.02			1.0694	1.08	27.616	9	3	Median	1.5757	1.2968	7.4924	2	1	Median	0.76533	0.94423	15.218	3	1	Plateau	1.1439	1.1014	2.7727	2	1	Median	0.59211	0.63921	4.5434	2	0	Median	1934600000	1001800000	932800000	197050000	52930000	144120000	370820000	177630000	193190000	656660000	347990000	308670000	710090000	423280000	286820000	50037	5215	47103	302087;302088;302089;302090;302091;302092;302093;302094;302095;302096	406081;406082;406083;406084;406085;406086;406087;406088;406089	406081			9	
TGFGFTNVTAHQK	1	Unmodified	1406.6943	0.69426293	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				41.614	40.078	3	0.00029377	32756	160511_QHF_FH_JSI9i_3	63.76	41.887			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50038	1372	47104	302097	406090	406090			1	
TGFGGKFGVQSER	1	Acetyl (K)	1410.6892	0.68917755	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	1	2	2	1	60.291	50.5	2	0.0030051	26301	160513_QHF_FH_JSI12Kac_6	70.488	57.135			1.4556	1.5394	72.872	5	1	Median	1.8109	1.5394	NaN	1	1	Median	1.5164	1.7953	5.6812	2	0	Median	0.53087	0.52051	NaN	1	0	Median	0.36582	0.40344	NaN	1	0	Median	56079000	33605000	22474000	8301300	2845900	5455500	23681000	11491000	12190000	14553000	12603000	1949100	9544000	6664500	2879500	50039	2522	47105	302098;302099;302100;302101;302102;302103	406091;406092;406093;406094;406095;406096;406097	406096	2525		7	
TGFNMDDLQK	1	Unmodified	1167.523	0.52302343	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				51.785	50.585	2	0.016243	44970	160511_QHF_FH_JSI9i_1	50.452	38.858			1.6919	1.4313	NaN	1	1	Median	1.6919	1.4313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29961000	9275300	20686000	29961000	9275300	20686000	0	0	0	0	0	0	0	0	0	50040	3262	47106	302104	406098	406098			1	
TGFQAVTGK	1	Unmodified	907.47633	0.47633123	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.89	5	5	2				2	3		5	5	4	3	28.294	25.163	2	3.081E-05	21682	160511_QHF_FH_JSI9i_2	102.07	81.785			1.505	1.4063	69.633	15	10	Median	1.7694	1.4063	62.974	5	3	Median	1.4004	1.6552	98.889	4	2	Median	0.76783	0.78781	80.245	3	2	Median	1.505	1.6749	45.437	3	3	Median	3317300000	1258500000	2058800000	444180000	183020000	261160000	785680000	236420000	549260000	1011200000	438770000	572470000	1076200000	400300000	675940000	50041	1169	47107	302105;302106;302107;302108;302109;302110;302111;302112;302113;302114;302115;302116;302117;302118;302119;302120;302121	406099;406100;406101;406102;406103;406104;406105;406106;406107;406108;406109;406110;406111;406112;406113	406110			14	
TGFSFPTQEPR	0	Unmodified	1265.6041	0.60405094	422	O60504	SORBS3	Vinexin	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				11.932	11.32	3	0.039917	9003	160511_QHF_FH_JSI9i_2	22.046	5.414			2.2794	1.9474	NaN	1	0	Median	2.2794	1.9474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49305000	14972000	34333000	49305000	14972000	34333000	0	0	0	0	0	0	0	0	0	50042	422	47108	302122	406114	406114			1	
TGFSMFMK	1	Unmodified	947.4245	0.42449536	3752	Q8WU76	SCFD2	Sec1 family domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		62.965	62.965	2	0.026613	56005	160511_QHF_FH_JSI11i_3	43.808	29.026			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50043	3752	47109	302123	406115	406115			1	
TGFSSDQIEQLHR	0	Unmodified	1516.727	0.72701962	3992	Q96BS2	TESC	Calcineurin B homologous protein 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		43.12	43.12	3	0.0024839	38001	160511_QHF_FH_JSI11i_3	30.572	19.099			0.92692	0.86671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92692	0.86671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49954000	25263000	24691000	0	0	0	0	0	0	49954000	25263000	24691000	0	0	0	50044	3992	47110	302124	406116	406116			1	
TGFSTSPESPYTHWK	1	Unmodified	1723.7842	0.78420015	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	3.99		2	7						1	2	2	2	4	51.116	49.624	2;3	2.1152E-35	42582	160511_QHF_FH_JSI12i_3	170.04	149.74			1.262	1.2045	30.888	9	5	Median	1.9294	1.6436	7.7339	2	1	Median	1.4196	1.6866	20.176	2	1	Median	1.1907	1.118	10.543	2	1	Median	0.8613	0.86146	9.9131	3	2	Median	1991200000	930300000	1060900000	188990000	49139000	139850000	97390000	31473000	65917000	801770000	404240000	397530000	903040000	445450000	457590000	50045	4325	47111	302125;302126;302127;302128;302129;302130;302131;302132;302133;302134	406117;406118;406119;406120;406121;406122;406123;406124;406125;406126;406127;406128;406129;406130;406131	406131			15	
TGGADQSLQQGEGSK	1	Unmodified	1461.6696	0.66956432	924	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.19	4				2					1	2	1	2	13.096	10.429	2	2.2384E-41	8911	160511_QHF_FH_JSI10i_1	211.22	192.78			0.91891	1.0336	27.068	6	0	Median	1.4129	1.1539	NaN	1	0	Median	0.91891	1.0591	2.7413	2	0	Median	1.0454	1.0285	NaN	1	0	Median	0.6089	0.64067	4.5823	2	0	Median	496450000	254650000	241810000	126910000	53711000	73202000	136750000	68735000	68013000	116050000	58594000	57454000	116740000	73607000	43138000	50046	924	47112	302135;302136;302137;302138;302139;302140	406132;406133;406134;406135;406136;406137;406138;406139;406140;406141	406137			10	
TGGADQSLQQGEGSKK	2	Unmodified	1589.7645	0.76452734	924	P09132	SRP19	Signal recognition particle 19 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	9.0416	8.7246	3	1.0759E-07	6654	160511_QHF_FH_JSI12i_1	105.53	95.47			1.1599	1.3742	61.24	5	3	Median	2.3493	1.95	NaN	1	1	Median	1.1599	1.3742	NaN	1	0	Median	1.4765	1.4209	88.399	2	2	Median	0.5995	0.62467	NaN	1	0	Median	366790000	141630000	225160000	57396000	15131000	42265000	111330000	44069000	67258000	118800000	46507000	72292000	79270000	35928000	43343000	50047	924	47113	302141;302142;302143;302144;302145;302146	406142;406143;406144;406145;406146;406147;406148;406149	406144			8	
TGGAYGEDLGADYNLSQVCDGK	1	Unmodified	2288.9856	0.98555509	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	64.405	63.78	2;3	0	57880	160511_QHF_FH_JSI11i_1	385.8	379.22			0.99884	1.0955	21.632	8	0	Median	1.7087	1.4198	6.0758	2	0	Median	1.0793	1.2536	0.11145	2	0	Median	0.89325	0.8788	3.3296	2	0	Median	0.89215	0.93068	4.1141	2	0	Median	1017600000	494130000	523500000	158230000	51653000	106570000	257290000	136100000	121190000	294800000	156040000	138750000	307330000	150340000	156990000	50048	1650	47114	302147;302148;302149;302150;302151;302152;302153;302154	406150;406151;406152;406153;406154;406155;406156;406157;406158;406159;406160;406161;406162;406163;406164;406165	406152			16	
TGGEHVYFAKFLTSEK	2	Acetyl (K)	1854.9152	0.91521432	4076	Q96FV9	THOC1	THO complex subunit 1	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			76.624	70.374	3	0.0048802	38392	160513_QHF_FH_JSI10Kac_6	59.372	48.887			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26274000	26274000	0	0	0	0	26274000	26274000	0	0	0	0	0	0	0	50049	4076	47115	302155	406166	406166	3042		1	
TGGIVMLGR	0	Unmodified	902.50077	0.50077184	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	2	1	46.591	42.834	2	0.0028385	36457	160511_QHF_FH_JSI12i_3	62.464	39.445			1.2682	1.1982	10.543	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0909	1.2436	NaN	1	0	Median	1.4018	1.3232	14.025	2	0	Median	NaN	NaN	NaN	0	0	Median	100060000	48183000	51881000	0	0	0	35669000	19859000	15811000	64395000	28324000	36071000	0	0	0	50050	3335	47116	302156;302157;302158;302159	406167;406168;406169;406170	406170			4	
TGGLEIDSDFGGFR	0	Unmodified	1469.6787	0.67867245	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	3	5	1							2	3	2	2	74.386	73.638	2	1.0478E-51	64663	160511_QHF_FH_JSI11i_2	211.64	200.28			0.82873	0.92421	26.542	8	6	Median	1.3299	1.1164	11.753	2	2	Median	0.78188	0.92421	8.8354	2	2	Median	0.95175	0.92717	23.275	2	1	Median	0.58144	0.62623	24.972	2	1	Median	774200000	404070000	370140000	133280000	53644000	79634000	179600000	100370000	79234000	240550000	121260000	119290000	220770000	128790000	91981000	50051	736	47117	302160;302161;302162;302163;302164;302165;302166;302167;302168	406171;406172;406173;406174;406175;406176;406177;406178;406179;406180;406181;406182;406183	406181			13	
TGGLFGLAVGLMQLFSDYK	1	Unmodified	2016.039	0.039034628	722	O95749	GGPS1	Geranylgeranyl pyrophosphate synthase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.87	98.145	3	1.3794E-16	58103	160513_QHF_FH_JSI10Kac_6	139.11	111.39			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50052	722	47118	302169	406184	406184			1	
TGGMAFHSYFMEAIAPPLLQELK	1	Unmodified	2550.2651	0.26508817	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	96.991	90.269	3	2.6605E-22	51604	160513_QHF_FH_JSI10Kac_6	133.74	129.72			0.97024	1.0814	23.088	5	0	Median	1.5698	1.3636	NaN	1	0	Median	0.91453	1.1006	NaN	1	0	Median	1.0435	1.0033	10.602	2	0	Median	0.69347	0.73062	NaN	1	0	Median	1286400000	635380000	651020000	251440000	84292000	167150000	297980000	155190000	142790000	489490000	251690000	237800000	247490000	144210000	103280000	50053	1650	47119	302170;302171;302172;302173;302174	406185;406186;406187;406188;406189;406190;406191;406192;406193	406193			8	
TGGMAFHSYFMEAIAPPLLQELK	1	Oxidation (M)	2566.26	0.2600028	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				93.727	84.786	3	0.011765	47851	160513_QHF_FH_JSI9Kac_6	48.984	35.254			0.97347	0.82151	NaN	1	1	Median	0.97347	0.82151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60032000	38295000	21737000	60032000	38295000	21737000	0	0	0	0	0	0	0	0	0	50054	1650	47119	302175	406194	406194		1324	1	
TGGMAFHSYFMEAIAPPLLQELKK	2	Unmodified	2678.3601	0.36005119	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	2	1	3	2	93.681	86.319	3;4	2.3346E-18	46743	160513_QHF_FH_JSI9Kac_6	107.08	99.973			0.97772	0.93039	27.723	7	2	Median	1.2916	1.117	25.848	2	0	Median	0.88421	1.0414	NaN	1	0	Median	0.98846	0.93892	3.4136	2	1	Median	0.61129	0.6498	25.059	2	1	Median	1218100000	607160000	610920000	310800000	131120000	179680000	102480000	53578000	48900000	435570000	202620000	232950000	369230000	219840000	149390000	50055	1650	47120	302176;302177;302178;302179;302180;302181;302182;302183	406195;406196;406197;406198;406199;406200;406201	406197			6	
TGGMMYFGLAGVTK	1	Unmodified	1431.689	0.6890429	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	1	2	2	80.23	79.601	2	3.4427E-06	69159	160511_QHF_FH_JSI12i_3	131.69	102.73			1.0803	1.0821	20.268	5	4	Median	1.7241	1.4199	NaN	1	1	Median	1.0449	1.1798	NaN	1	0	Median	1.0908	1.0466	NaN	1	1	Median	0.93539	0.93756	20.277	2	2	Median	277240000	136420000	140820000	21343000	6615000	14728000	31514000	13496000	18018000	55260000	26108000	29152000	169130000	90203000	78924000	50056	5202	47121	302184;302185;302186;302187;302188;302189	406202;406203;406204;406205;406206;406207	406207			6	
TGGNFKPSQK	2	Unmodified	1062.5458	0.54580778	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		3	0			5							2	2	1		7.6377	7.2082	2;3	0.019805	5005	160511_QHF_FH_JSI9i_3	57.174	36.654			1.088	0.90253	20.798	5	0	Median	1.1557	0.93403	4.8518	2	0	Median	0.57693	0.65987	1.5922	2	0	Median	1.088	1.0072	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	505800000	258180000	247620000	219140000	110390000	108750000	174210000	110540000	63671000	112440000	37247000	75195000	0	0	0	50057	5229	47122	302190;302191;302192;302193;302194	406208;406209	406208			2	
TGGPAYGPSSDVSTASETESEK	1	Unmodified	2155.9393	0.9393164	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	34.546	33.938	2;3	7.1187E-23	30334	160511_QHF_FH_JSI10i_1	171.46	158.69			1.2893	1.2205	71.669	6	4	Median	1.9862	1.616	NaN	1	1	Median	1.7018	1.9394	105.2	2	2	Median	1.309	1.2682	60.885	2	1	Median	0.52242	0.55502	NaN	1	0	Median	170570000	58510000	112060000	39190000	5026800	34164000	59411000	16820000	42591000	49838000	21735000	28103000	22132000	14927000	7205100	50058	1726	47123	302195;302196;302197;302198;302199;302200;302201;302202;302203	406210;406211;406212;406213;406214;406215;406216;406217;406218;406219	406216			10	
TGGQVPDTNYIFMGDFVDR	0	Unmodified	2130.9681	0.96805453	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		2	1	92.274	91.793	2	1.8053E-15	83585	160511_QHF_FH_JSI11i_1	156.49	142.33			1.1781	1.1395	25.866	4	3	Median	1.9776	1.6143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1781	1.1395	2.8286	2	2	Median	0.83989	0.85923	NaN	1	0	Median	192840000	87391000	105450000	34498000	12645000	21853000	0	0	0	100720000	43889000	56829000	57628000	30857000	26771000	50059	160	47124	302204;302205;302206;302207;302208	406220;406221;406222;406223;406224;406225	406221			6	
TGGVLLHPIFGGGK	1	Unmodified	1351.7612	0.76122028	3098	Q6P1X5	TAF2	Transcription initiation factor TFIID subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	61.952	60.436	2	0.0014304	49624	160511_QHF_FH_JSI9i_3	76.943	43.714			1.931	1.64	NaN	1	1	Median	1.931	1.64	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9985500	3231200	6754300	9985500	3231200	6754300	0	0	0	0	0	0	0	0	0	50060	3098	47125	302209;302210	406226;406227	406226			2	
TGGYLTESGYVNLQR	0	Unmodified	1656.8107	0.81074925	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		57.411	56.659	2	1.0595E-06	49800	160511_QHF_FH_JSI9i_2	160.67	130.28			1.4062	1.2932	11.127	2	1	Median	1.6512	1.3991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1976	1.1954	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74839000	25317000	49523000	29529000	10220000	19310000	0	0	0	45310000	15097000	30213000	0	0	0	50061	4628	47126	302211;302212	406228;406229;406230	406228			3	
TGHFPNTK	1	Unmodified	900.44537	0.44536545	9	A0PJW6	TMEM223	Transmembrane protein 223	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	8.8123	8.5418	2;3	0.016864	6352	160511_QHF_FH_JSI10i_3	35.269	1.0158			0.79729	0.87151	30.574	4	3	Median	1.7915	1.423	NaN	1	1	Median	0.82405	0.95523	NaN	1	1	Median	0.75807	0.708	NaN	1	0	Median	0.7714	0.79513	NaN	1	1	Median	563870000	295250000	268620000	50842000	19989000	30853000	117890000	51888000	65999000	77312000	40326000	36987000	317830000	183050000	134780000	50062	9	47127	302213;302214;302215;302216;302217	406231;406232;406233;406234;406235;406236	406234			6	
TGHIAAGTSTNGIK	1	Unmodified	1326.6892	0.68917755	1184	P20933	AGA	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;Glycosylasparaginase alpha chain;Glycosylasparaginase beta chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	13.873	13.91	2;3	4.228E-05	10742	160511_QHF_FH_JSI12i_3	78.342	66.852			1.8389	1.834	103.09	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0195	3.8018	NaN	1	0	Median	0.84129	0.88472	NaN	1	0	Median	81743000	38652000	43091000	0	0	0	0	0	0	23629000	4838700	18790000	58114000	33813000	24301000	50063	1184	47128	302218;302219;302220	406237;406238;406239	406239			3	
TGHSLLHTLYGR	0	Unmodified	1353.7153	0.71533272	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			45.378	36.766	4	0.0014347	20347	160513_QHF_FH_JSI10Kac_6	43.501	31.865			1.2565	1.4771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2565	1.4771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16627000	6655200	9971900	0	0	0	16627000	6655200	9971900	0	0	0	0	0	0	50064	1367	47129	302221	406240	406240			1	
TGHYLTVK	1	Unmodified	917.49707	0.49706667	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							2	4	3	3	15.434	14.93	2;3	0.0003188	12127	160511_QHF_FH_JSI10i_3	90.657	67.917			0.90239	0.89711	30.551	12	0	Median	1.5869	1.3081	10.463	2	0	Median	0.79628	0.95273	31.531	4	0	Median	1.0996	1.0205	21.425	3	0	Median	0.70373	0.7048	8.136	3	0	Plateau	4655900000	2568400000	2087500000	306200000	109260000	196940000	959980000	465810000	494170000	1199700000	636200000	563490000	2190000000	1357100000	832910000	50065	300	47130	302222;302223;302224;302225;302226;302227;302228;302229;302230;302231;302232;302233	406241;406242;406243;406244;406245;406246;406247;406248;406249;406250;406251;406252;406253;406254	406244			14	
TGIAAIAVHGR	0	Unmodified	1064.6091	0.60907674	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		40.408	31.317	3	0.00047946	16757	160513_QHF_FH_JSI9Kac_6	63.408	43.801			0.81384	0.8743	58.898	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1181	1.326	NaN	1	0	Median	0.59235	0.57649	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16426000	7878800	8547300	0	0	0	11168000	4444300	6723800	5257900	3434500	1823400	0	0	0	50066	5100	47131	302234;302235;302236	406255;406256;406257	406256			3	
TGIANTLGNK	1	Unmodified	987.53491	0.53490874	280	O15357;Q92835	INPPL1;INPP5D	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2;Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	3.94		6	1				1			2	2	3	1	27.028	24.474	2	0.00084814	20405	160511_QHF_FH_JSI11i_2	82.645	23.4			0.82357	1.0117	58.555	5	5	Median	0.62814	0.54344	NaN	1	1	Median	0.82357	1.0117	NaN	1	1	Median	1.26	1.2472	13.072	2	2	Median	0.30176	0.33475	NaN	1	1	Median	98896000	59469000	39427000	13951000	7563300	6387800	18926000	14405000	4521100	37706000	18631000	19075000	28313000	18870000	9443400	50067	280	47132	302237;302238;302239;302240;302241;302242;302243;302244	406258;406259;406260;406261;406262;406263;406264;406265	406263			8	
TGIDLGTTGR	0	Unmodified	989.51417	0.5141733	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3.8	5.11	3	1					1					2	3	35.911	32.839	2	0.0018373	29820	160511_QHF_FH_JSI12i_1	67.414	38.496			0.75914	0.77787	10.701	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86645	0.85166	2.7916	2	0	Median	0.67407	0.71057	2.7715	2	0	Median	470210000	247510000	222700000	0	0	0	0	0	0	239360000	122820000	116540000	230850000	124690000	106160000	50068	2538	47133	302245;302246;302247;302248;302249	406266;406267;406268;406269;406270;406271;406272	406270			7	
TGIEQGSDAGYLCESQK	1	Unmodified	1841.8102	0.8101569	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.94	40.304	2	6.5892E-81	36364	160511_QHF_FH_JSI11i_1	246.96	228.69			1.0361	1.1115	19.587	4	2	Median	1.6145	1.3037	NaN	1	1	Median	1.1435	1.2886	NaN	1	1	Median	0.92077	0.89541	NaN	1	0	Median	0.93881	0.9587	NaN	1	0	Median	146140000	66543000	79601000	20477000	4026900	16450000	33904000	19005000	14899000	58971000	30904000	28067000	32791000	12607000	20184000	50069	1507	47134	302250;302251;302252;302253	406273;406274;406275;406276;406277;406278;406279	406273			7	
TGIPISMSLLYLTIAR	0	Unmodified	1747.9906	0.99062787	631	O94952	FBXO21	F-box only protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		97.817	89.738	2	4.4609E-33	53530	160513_QHF_FH_JSI10Kac_6	173.72	139.83			0.96701	0.90883	11.06	3	0	Median	0.96701	0.83374	NaN	1	0	Median	0.87394	1.0384	NaN	1	0	Median	0.96858	0.90883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	472300000	241250000	231050000	106990000	52510000	54476000	162220000	90787000	71433000	203100000	97954000	105150000	0	0	0	50070	631	47135	302254;302255;302256	406280;406281;406282	406281			3	
TGIPIVTSPYQIHFTK	1	Unmodified	1800.9774	0.97742065	70	CON__Q2UVX4			yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.648	80.536	3	0.0015615	71878	160511_QHF_FH_JSI11i_3	48.623	37.768		+	0.72106	0.7217	18.097	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.864	0.82022	NaN	1	0	Median	0.60177	0.63501	NaN	1	1	Median	46516000	20301000	26216000	0	0	0	0	0	0	24851000	9601500	15250000	21665000	10699000	10966000	50071	70	47136	302257;302258	406283;406284	406283			2	
TGIPLNVLPK	1	Unmodified	1050.6437	0.64373091	4085	Q96GA3	LTV1	Protein LTV1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			70.889	70.655	2	0.011432	63968	160511_QHF_FH_JSI10i_1	46.457	33.079			0.73583	0.8391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73583	0.8391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29720000	17394000	12326000	0	0	0	29720000	17394000	12326000	0	0	0	0	0	0	50072	4085	47137	302259	406285	406285			1	
TGIQVLLK	1	Unmodified	870.55385	0.55385327	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	57.03	56.166	2	0.0024882	48078	160511_QHF_FH_JSI12i_3	79.713	20.931			0.96509	0.91053	39.846	6	3	Median	1.0988	0.88562	NaN	1	1	Median	0.82281	0.93613	NaN	1	1	Median	1.1588	1.1148	4.1351	2	0	Median	0.54758	0.58014	58.606	2	1	Median	373150000	203010000	170140000	25060000	12353000	12707000	34546000	20767000	13779000	143300000	69562000	73741000	170240000	100320000	69917000	50073	485	47138	302260;302261;302262;302263;302264;302265	406286;406287;406288;406289;406290;406291	406291			6	
TGISDVFAK	1	Unmodified	936.49165	0.49164694	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.87	4	4	4			1	2	3		3	5	5	5	55.79	52.1	2	5.7893E-12	47099	160511_QHF_FH_JSI11i_1	167.33	113.17			0.9795	1.0177	18.494	17	1	Median	1.4113	1.1614	0.24348	3	0	Median	0.85448	1.0103	15.778	5	1	Median	1.0543	1.048	7.6639	5	0	Median	0.69419	0.7454	5.4856	4	0	Median	15487000000	7848800000	7638500000	3085700000	1281100000	1804600000	3874300000	2032700000	1841600000	4544800000	2124800000	2420100000	3982500000	2410200000	1572200000	50074	1154	47139	302266;302267;302268;302269;302270;302271;302272;302273;302274;302275;302276;302277;302278;302279;302280;302281;302282;302283	406292;406293;406294;406295;406296;406297;406298;406299;406300;406301;406302;406303;406304;406305;406306;406307;406308;406309;406310;406311;406312;406313;406314;406315;406316;406317;406318;406319;406320;406321;406322;406323;406324;406325;406326;406327;406328;406329;406330	406294			39	
TGISEEAAIEENK	1	Unmodified	1389.6624	0.66235368	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.121	35.722	2	0.00011269	32388	160511_QHF_FH_JSI12i_1	110.93	97.579			0.61087	0.70595	15.907	3	3	Median	NaN	NaN	NaN	0	0	Median	0.61087	0.70595	NaN	1	1	Median	0.85869	0.82188	NaN	1	1	Median	0.57408	0.59798	NaN	1	1	Median	100370000	63503000	36863000	0	0	0	27261000	16548000	10713000	37710000	22465000	15246000	35395000	24490000	10905000	50075	2977	47140	302284;302285;302286	406331;406332;406333	406332			3	
TGISHGHTVYVVHDGFEGLAK	1	Unmodified	2223.1073	0.10726562	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			58.072	49.375	4;5	2.8668E-08	26869	160513_QHF_FH_JSI10Kac_6	87.49	78.889			1.077	1.2902	11.329	3	0	Plateau	1.2475	1.0653	NaN	1	0	Median	1.078	1.2961	0.63922	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83900000	45494000	38406000	25184000	12113000	13071000	58716000	33380000	25335000	0	0	0	0	0	0	50076	1129	47141	302287;302288;302289	406334;406335;406336;406337	406337			4	
TGIVDISILTTGMSATSR	0	Unmodified	1821.9506	0.95061355	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	99.043	98.873	2	3.0825E-05	86653	160511_QHF_FH_JSI11i_2	85.45	79.264			1.1537	1.1776	40.122	3	1	Median	1.5243	1.3368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1537	1.1776	NaN	1	0	Median	0.59027	0.63172	NaN	1	0	Median	62649000	31649000	31000000	17291000	7800300	9490300	0	0	0	27937000	13916000	14021000	17421000	9932800	7488000	50077	1409	47142	302290;302291;302292	406338;406339;406340;406341	406341			4	
TGIVDISILTTGMSATSRK	1	Unmodified	1950.0456	0.045576569	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			89.624	88.509	3	0.0067337	73902	160511_QHF_FH_JSI10i_3	41.513	31.046			1.2099	1.1876	9.0866	2	2	Median	1.3483	1.1137	NaN	1	1	Median	1.0858	1.2665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54213000	24043000	30171000	21234000	8561500	12673000	32979000	15481000	17498000	0	0	0	0	0	0	50078	1409	47143	302293;302294	406342;406343	406342			2	
TGIYEEK	1	Unmodified	838.40725	0.40724861	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.32	4	3				2	3	2		2	4	5	3	18.137	13.74	2	0.0010397	12126	160511_QHF_FH_JSI11i_1	125.25	55.82			0.96959	1.0216	27.188	14	1	Median	1.4494	1.2245	26.059	2	0	Median	0.70659	0.831	16.092	4	1	Median	1.1248	1.1032	7.095	5	0	Median	0.54713	0.58332	7.1578	3	0	Plateau	8277600000	3972100000	4305600000	1945100000	646880000	1298200000	2199100000	1238200000	960820000	2006900000	728040000	1278800000	2126600000	1358900000	767720000	50079	1299	47144	302295;302296;302297;302298;302299;302300;302301;302302;302303;302304;302305;302306;302307;302308	406344;406345;406346;406347;406348;406349;406350;406351;406352;406353;406354;406355;406356;406357;406358	406345			15	
TGIYEEKHAK	2	Acetyl (K)	1216.6088	0.60880197	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.699							7	6	2		6	5	4	25.862	17.068	2;3	5.4377E-11	10912	160513_QHF_FH_JSI10Kac_4	136.02	119.35			0.2421	0.23947	246.37	13	6	Median	NaN	NaN	NaN	0	0	Median	1.3484	1.6132	262.58	6	2	Median	0.066941	0.066201	156.1	4	2	Median	0.051976	0.056068	51.948	3	2	Median	635230000	483230000	152010000	0	0	0	98300000	40866000	57435000	485590000	394320000	91275000	51341000	48043000	3297900	50080	1299	47145	302309;302310;302311;302312;302313;302314;302315;302316;302317;302318;302319;302320;302321;302322;302323	406359;406360;406361;406362;406363;406364;406365;406366;406367;406368;406369;406370;406371;406372;406373;406374;406375;406376;406377	406361	1236		19	
TGKPIAVK	2	Unmodified	812.51199	0.51198846	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	8.6324	8.6812	3	0.030184	6041	160511_QHF_FH_JSI12i_3	37.727	21.188			1.591	1.5627	4.1651	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7035	1.6094	NaN	1	1	Median	1.4859	1.5174	NaN	1	1	Median	1836600000	468370000	1368200000	0	0	0	0	0	0	672180000	178180000	494000000	1164400000	290190000	874190000	50081	543	47146	302324;302325	406378;406379	406379			2	
TGKPIAVK	2	Acetyl (K)	854.52255	0.52255314	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	13.3	0.471						2	1				1	1	1	35.207	26.239	2	0.0071554	15684	160513_QHF_FH_JSI11Kac_3	80.438	33.356			0.53861	0.58562	47.077	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0191	1.212	NaN	1	0	Median	0.51912	0.502	NaN	1	0	Median	0.53861	0.58562	NaN	1	0	Median	22649000	13609000	9040300	0	0	0	7868700	4216900	3651800	10262000	6319200	3942500	4518500	3072500	1446000	50082	543	47146	302326;302327;302328	406380;406381	406380	286		2	
TGKPLPFGTLGVHK	2	Unmodified	1450.8296	0.8296342	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	46.686	45.831	3;4	0.00012871	38758	160511_QHF_FH_JSI12i_3	71.08	61.547			0.70604	0.70301	51.569	4	4	Median	0.79723	0.67188	NaN	1	1	Median	0.62527	0.73558	NaN	1	1	Median	1.0657	1.0347	NaN	1	1	Median	0.29894	0.30558	NaN	1	1	Median	210160000	127700000	82459000	34338000	18639000	15700000	44151000	28027000	16124000	63511000	31999000	31513000	68162000	49040000	19122000	50083	1694	47147	302329;302330;302331;302332;302333;302334;302335	406382;406383;406384;406385;406386;406387;406388	406388			7	
TGKPMINLYTDK	2	Unmodified	1379.7119	0.71188683	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	41.194	40.377	2;3	4.6301E-05	34474	160511_QHF_FH_JSI12i_3	88.092	76.88			1.0735	1.128	38.755	8	2	Median	1.9673	1.5893	1.8254	2	0	Median	0.73324	0.84373	63.327	2	2	Median	1.1778	1.128	21.273	2	0	Median	0.77372	0.79823	6.9654	2	0	Median	1383400000	682230000	701180000	228630000	88848000	139790000	336550000	191050000	145500000	361330000	152190000	209150000	456890000	250140000	206750000	50084	3889	47148	302336;302337;302338;302339;302340;302341;302342;302343	406389;406390;406391;406392;406393;406394;406395;406396;406397;406398	406397			10	
TGKPMINLYTDK	2	Acetyl (K)	1421.7225	0.72245152	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	72.005	61.276	2	4.9974E-05	32726	160513_QHF_FH_JSI10Kac_4	95.477	71.447			0.65506	0.78185	58.374	3	1	Median	NaN	NaN	NaN	0	0	Median	0.65506	0.78185	NaN	1	0	Median	0.31818	0.32025	NaN	1	1	Median	0.89206	0.96017	NaN	1	0	Median	39776000	24603000	15173000	0	0	0	20086000	12982000	7104300	4210300	3505400	704810	15479000	8115500	7364000	50085	3889	47148	302344;302345;302346	406399;406400;406401;406402	406400	2986		4	
TGKPMINLYTDK	2	Oxidation (M)	1395.7068	0.70680145	3889	Q92804	TAF15	TATA-binding protein-associated factor 2N	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				35.064	33.62	3	0.0078039	27457	160511_QHF_FH_JSI9i_3	44.457	28.319			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50086	3889	47148	302347	406403	406403		2324	1	
TGKTVSYLGLE	1	Acetyl (K)	1208.6289	0.62886871	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	11.6	0.49				2	3						2		3	77.417	69.068	2	1.9422E-07	29869	160513_QHF_FH_JSI12Kac_2	114.84	95.57			0.90989	1.0147	16.937	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0243	1.2039	15.841	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87358	0.94149	2.2483	2	0	Median	46299000	23511000	22788000	0	0	0	14270000	6563600	7706000	0	0	0	32030000	16948000	15082000	50087	112	47149	302348;302349;302350;302351;302352	406404;406405;406406;406407;406408	406408	72		5	
TGLAVTVGQAK	1	Unmodified	1043.5975	0.597509	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.35	3	4	3			1	3			2	4	4	4	39.705	35.923	2	0.00010188	30621	160511_QHF_FH_JSI12i_2	86.898	51.018			0.74145	0.83353	37.956	12	3	Median	0.87352	0.74324	19.656	2	1	Median	0.38326	0.46201	42.711	3	0	Plateau	0.71533	0.7089	57.788	4	2	Median	0.74618	0.81349	6.0638	3	0	Median	765000000	445830000	319170000	135660000	72165000	63490000	91127000	53201000	37926000	370500000	223070000	147430000	167720000	97399000	70322000	50088	2409	47150	302353;302354;302355;302356;302357;302358;302359;302360;302361;302362;302363;302364;302365;302366	406409;406410;406411;406412;406413;406414;406415;406416;406417;406418;406419;406420;406421;406422;406423;406424;406425;406426;406427	406411			18	
TGLFSATQTQEVENLVR	0	Unmodified	1891.964	0.96395543	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.977	84.384	2	0.00020164	74237	160511_QHF_FH_JSI11i_2	93.011	76.478			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50089	3670	47151	302367	406428	406428			1	
TGLFTPDLAFEAIVKK	2	Unmodified	1748.9713	0.97127264	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.9	100.92	3	6.2979E-08	87534	160511_QHF_FH_JSI12i_3	154.69	132.85			0.73583	0.75417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73583	0.75417	NaN	1	1	Median	66222000	39951000	26271000	0	0	0	0	0	0	0	0	0	66222000	39951000	26271000	50090	1711	47152	302368	406429	406429			1	
TGLGTHTIPDYEVLSNEPHETMPIAAFGQK	1	Unmodified	3252.5761	0.57612822	2974	Q5TKA1	LIN9	Protein lin-9 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		85.708	85.708	4	8.2619E-13	76487	160511_QHF_FH_JSI11i_3	78.429	73.424			1.1441	1.0273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1441	1.0273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	48374000	20766000	27608000	0	0	0	0	0	0	48374000	20766000	27608000	0	0	0	50091	2974	47153	302369	406430;406431	406430			2	
TGLIDYNQLALTAR	0	Unmodified	1547.8308	0.83075641	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.74	3	5	3					2		3	4	4	2	78.014	75.669	2	1.3121E-116	68330	160511_QHF_FH_JSI10i_2	269.81	251.5			0.95282	1.0695	21.407	12	1	Median	1.6251	1.3696	8.1104	2	1	Median	0.85852	1.0211	11.229	4	0	Median	1.086	1.0695	16.651	4	0	Median	0.69112	0.74356	3.4363	2	0	Median	3117400000	1555000000	1562400000	506710000	175380000	331330000	849000000	441890000	407110000	1037000000	511230000	525790000	724670000	426510000	298160000	50092	1415	47154	302370;302371;302372;302373;302374;302375;302376;302377;302378;302379;302380;302381;302382	406432;406433;406434;406435;406436;406437;406438;406439;406440;406441;406442;406443;406444;406445;406446;406447;406448;406449;406450;406451;406452;406453;406454;406455;406456	406454			25	
TGLIIGK	1	Unmodified	700.44833	0.44832557	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.84	3	4	4				2	3		2	5	5	4	38.074	34.404	2	0.006833	28924	160511_QHF_FH_JSI12i_3	89.673	10.22			0.85479	0.96631	26.152	16	0	Median	1.6253	1.3495	12.29	2	0	Median	0.82656	1.0213	9.9063	5	0	Median	0.98258	0.99555	13.737	5	0	Median	0.58572	0.62391	17.329	4	0	Median	3076800000	1445400000	1631400000	584960000	218560000	366400000	725500000	382350000	343150000	958510000	422950000	535560000	807820000	421540000	386280000	50093	3966	47155	302383;302384;302385;302386;302387;302388;302389;302390;302391;302392;302393;302394;302395;302396;302397;302398	406457;406458;406459;406460;406461;406462;406463;406464;406465;406466;406467;406468;406469;406470;406471;406472;406473;406474;406475;406476;406477;406478;406479	406478			23	
TGLIIGKGGETIK	2	Acetyl (K)	1327.7711	0.77111627	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	70.178	59.498	2	0.036233	32348	160513_QHF_FH_JSI12Kac_4	51.092	26.749			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	539770	539770	0	0	0	0	0	0	0	0	0	0	539770	539770	0	50094	3966	47156	302399	406480	406480			1	
TGLIPSNYVAEQAESIDNPLHEAAK	1	Unmodified	2666.3188	0.31877454	3898	Q92882	OSTF1	Osteoclast-stimulating factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.567	2	6	1							2	2	3	2	85.881	85.35	3	3.2097E-36	75164	160511_QHF_FH_JSI9i_2	193.45	181.37			0.90138	0.94373	14.756	8	4	Median	1.3106	1.1154	NaN	1	1	Median	0.80652	0.95851	14.582	2	0	Median	0.94493	0.95299	14.675	3	1	Plateau	0.74547	0.81853	3.4893	2	2	Median	624850000	321070000	303780000	83077000	31888000	51189000	116640000	69782000	46853000	305400000	152060000	153340000	119740000	67340000	52400000	50095	3898	47157	302400;302401;302402;302403;302404;302405;302406;302407;302408	406481;406482;406483;406484;406485;406486;406487;406488;406489;406490	406487			8	
TGLITTTSRK	1	Unmodified	1076.619	0.61897272	2539	Q14517;Q8TDW7	FAT1;FAT3	Protocadherin Fat 1;Protocadherin Fat 1, nuclear form;Protocadherin Fat 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	79.954	76.467	2	0.021348	39662	160513_QHF_FH_JSI11Kac_6	64.207	64.207			1.0112	0.93111	3.6667	6	0	Median	1.0839	0.91202	0.50746	2	0	Median	0.80605	0.94256	NaN	1	0	Median	0.99041	0.93111	1.5115	2	0	Median	0.9983	1.005	NaN	1	0	Median	1074000000	511030000	563000000	528830000	226400000	302430000	43428000	21254000	22173000	407010000	211230000	195780000	94755000	52143000	42611000	50096	2539	47158	302409;302410;302411;302412;302413;302414	406491;406492;406493;406494;406495	406493			5	
TGLLGIFWK	1	Unmodified	1033.5961	0.59605244	3696	Q8TBQ9	TMEM167A	Protein kish-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	2	3	3	95.102	89.861	1;2	5.1943E-07	46049	160513_QHF_FH_JSI11Kac_6	133.55	93.547			0.9286	1.0431	25.516	10	0	Median	1.4002	1.1546	5.9444	2	0	Median	0.89829	1.0526	4.934	2	0	Median	1.1144	1.032	17.495	3	0	Plateau	0.72289	0.75939	46.099	3	0	Plateau	4822300000	2315100000	2507200000	1233400000	452060000	781310000	1338700000	706560000	632110000	1378000000	670620000	707340000	872300000	485840000	386450000	50097	3696	47159	302415;302416;302417;302418;302419;302420;302421;302422;302423;302424	406496;406497;406498;406499;406500;406501;406502;406503;406504;406505;406506;406507;406508;406509;406510;406511;406512	406500			16	
TGLLSFEESQR	0	Unmodified	1265.6252	0.62518031	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	56.054	54.916	2	6.4514E-05	48549	160511_QHF_FH_JSI10i_2	93.096	78.581			0.71554	0.84945	22.495	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80164	0.99591	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63869	0.72453	NaN	1	0	Median	111970000	61627000	50346000	0	0	0	60183000	31406000	28777000	0	0	0	51790000	30221000	21569000	50098	4621	47160	302425;302426	406513;406514;406515	406515			3	
TGLPLSTYFSAVK	1	Unmodified	1382.7446	0.74456717	1391;2534	Q14409;P32189;Q14410	GK3P;GK;GK2	Putative glycerol kinase 3;Glycerol kinase;Glycerol kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	88.169	87.93	2	0.00055853	78285	160511_QHF_FH_JSI11i_3	88.187	65.447			0.90826	0.94752	9.6601	5	4	Median	1.1743	1.0355	NaN	1	1	Median	0.67534	0.83594	NaN	1	0	Median	0.99913	0.94752	NaN	1	1	Median	0.85103	0.89633	10.922	2	2	Median	167300000	83487000	83809000	16631000	7303900	9327300	19209000	8579700	10629000	37213000	17262000	19950000	94243000	50341000	43902000	50099	1391;2534	47161	302427;302428;302429;302430;302431	406516;406517;406518;406519;406520;406521	406516			5	
TGLSIQNSSLFPILLHFHIMEAMLYALLNK	1	Unmodified	3413.8244	0.82436117	4210	Q96QE5	TEFM	Transcription elongation factor, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.01	96.293	4	2.5195E-78	56884	160513_QHF_FH_JSI10Kac_6	195.27	185.12			0.82721	0.98233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82721	0.98233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	253270000	139740000	113530000	0	0	0	253270000	139740000	113530000	0	0	0	0	0	0	50100	4210	47162	302432	406522;406523	406522			2	
TGLSLLFALLR	0	Unmodified	1202.7387	0.73869393	2704	Q15751	HERC1	Probable E3 ubiquitin-protein ligase HERC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.171	89.744	2	5.9769E-27	53761	160513_QHF_FH_JSI10Kac_6	182.65	112.69			1.012	1.0412	22.252	4	0	Median	1.5484	1.3262	NaN	1	0	Median	0.98071	1.1257	NaN	1	0	Median	1.0443	0.96311	NaN	1	0	Median	0.75142	0.7872	NaN	1	0	Median	232650000	93591000	139060000	55223000	10965000	44258000	84980000	41298000	43682000	55180000	25290000	29890000	37264000	16039000	21225000	50101	2704	47163	302433;302434;302435;302436	406524;406525;406526;406527	406527			4	
TGLSQLHNALNDVK	1	Unmodified	1508.7947	0.79470526	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		54.051	52.875	2;3	3.8872E-05	46694	160511_QHF_FH_JSI11i_3	95.067	70.996			1.1689	1.0795	15.487	4	2	Median	1.3959	1.1279	26.431	2	2	Median	0.93048	1.0697	NaN	1	0	Median	1.1761	1.0893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	209660000	96685000	112970000	44045000	19245000	24801000	50714000	21121000	29593000	114900000	56319000	58578000	0	0	0	50102	433	47164	302437;302438;302439;302440;302441	406528;406529;406530;406531;406532;406533;406534	406529			7	
TGLTPLMEAASGGYAEVGR	0	Unmodified	1878.9146	0.9145624	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	82.073	81.324	2	4.5192E-16	71452	160511_QHF_FH_JSI11i_2	173.44	142.61			1.1527	1.212	30.593	4	4	Median	1.9507	1.7174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1527	1.212	11.544	2	2	Median	0.76757	0.8268	NaN	1	1	Median	134580000	63428000	71154000	28092000	11398000	16694000	0	0	0	74859000	32525000	42334000	31631000	19504000	12126000	50103	3434;489	47165	302442;302443;302444;302445;302446	406535;406536;406537;406538;406539	406538			5	
TGLVEFAR	0	Unmodified	891.48142	0.48141661	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	45.28	44.505	2	0.00053249	38210	160511_QHF_FH_JSI11i_2	105.14	71.585			0.91764	1.0704	23.025	6	1	Median	NaN	NaN	NaN	0	0	Median	0.89328	1.0704	0.41839	2	0	Median	1.2827	1.2691	5.6212	2	0	Median	0.75019	0.80152	21.45	2	1	Median	1490000000	764640000	725340000	0	0	0	394890000	205620000	189270000	601140000	281040000	320090000	493960000	277980000	215990000	50104	1381	47166	302447;302448;302449;302450;302451;302452	406540;406541;406542;406543;406544;406545;406546;406547	406544			8	
TGLYNYYDDEK	1	Unmodified	1379.5881	0.5881261	1706	P50454	SERPINH1	Serpin H1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	45.241	42.578	2	2.5619E-38	38147	160511_QHF_FH_JSI9i_1	208.84	162.38			1.1843	1.1295	25.033	10	2	Median	1.299	1.0879	0.51847	2	0	Median	0.84427	0.99805	19.035	3	0	Plateau	1.2087	1.1856	44.634	3	2	Median	0.98064	1.0459	24.016	2	0	Median	5721600000	2677500000	3044100000	895970000	355600000	540370000	1719600000	782990000	936600000	1830500000	824700000	1005800000	1275500000	714180000	561290000	50105	1706	47167	302453;302454;302455;302456;302457;302458;302459;302460;302461;302462	406548;406549;406550;406551;406552;406553;406554;406555;406556;406557;406558;406559;406560;406561;406562;406563;406564;406565;406566;406567;406568;406569;406570;406571	406564			24	
TGMILLAGEITSR	0	Unmodified	1360.7384	0.73843593	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	4	4	2	4	79.011	76.029	2;3	1.5925E-66	65118	160511_QHF_FH_JSI10i_3	231.05	196.84			0.81037	0.92419	46.305	14	1	Median	1.4324	1.1985	18.184	4	0	Median	0.75785	0.88979	5.6948	4	0	Median	1.0916	1.0522	5.2397	2	0	Median	0.48128	0.48595	46.73	4	1	Median	1551200000	837550000	713660000	401280000	184400000	216880000	686110000	391080000	295030000	265460000	127370000	138090000	198360000	134700000	63664000	50106	1370	47168	302463;302464;302465;302466;302467;302468;302469;302470;302471;302472;302473;302474;302475;302476	406572;406573;406574;406575;406576;406577;406578;406579;406580;406581;406582;406583;406584;406585;406586;406587;406588;406589;406590;406591;406592;406593;406594	406576			23	
TGMILLAGEITSR	0	Oxidation (M)	1376.7334	0.73335055	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	11.5	6.02			2					1	3	3	2		1	65.74	60.388	2	3.3608E-05	33125	160513_QHF_FH_JSI10Kac_6	93.011	68.156			0.86831	0.85685	26.455	4	0	Median	1.2771	1.0613	38.574	2	0	Median	0.72135	0.84654	10.026	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72893000	37997000	34896000	25705000	12168000	13537000	47188000	25829000	21359000	0	0	0	0	0	0	50107	1370	47168	302477;302478;302479;302480;302481;302482	406595;406596;406597;406598;406599	406599		1003	5	
TGMYYLR	0	Unmodified	902.43202	0.43202358	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.14		3	4					1		2	2	2	2	39.212	37.196	2	0.0067123	31839	160511_QHF_FH_JSI12i_2	90.986	39.413			1.2529	1.2819	19.69	8	2	Median	2.211	1.8507	7.4005	2	0	Median	1.1602	1.3769	13.394	2	1	Median	1.288	1.2787	3.6392	2	0	Median	1.0603	1.1575	4.1699	2	1	Median	2420000000	1051400000	1368600000	416580000	143650000	272930000	229810000	102730000	127070000	947070000	370120000	576950000	826510000	434880000	391630000	50108	1242	47169	302483;302484;302485;302486;302487;302488;302489;302490	406600;406601;406602;406603;406604	406600			5	
TGNAWHSK	1	Unmodified	899.42496	0.42496436	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	3	5	3	2	6.0035	4.6156	2;3	0.00016575	3348	160511_QHF_FH_JSI10i_3	123.5	111.6			1.0284	1.0424	72.266	12	3	Median	1.8364	1.492	115.37	3	0	Median	0.79327	0.93031	37.368	5	2	Median	1.3403	1.2663	3.3633	2	1	Median	0.63673	0.653	6.2962	2	0	Median	4596800000	2337000000	2259800000	537580000	192130000	345460000	937830000	466230000	471600000	1390200000	530730000	859490000	1731200000	1147900000	583270000	50109	939	47170	302491;302492;302493;302494;302495;302496;302497;302498;302499;302500;302501;302502;302503	406605;406606;406607;406608;406609;406610;406611;406612;406613;406614;406615;406616;406617;406618;406619;406620	406610			16	
TGNAWHSKNFTK	2	Acetyl (K)	1431.6895	0.6895119	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	37.771	28.685	3	0.0011315	16069	160513_QHF_FH_JSI10Kac_6	61.423	49.949			0.56583	0.59849	123.68	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2442	1.4351	NaN	1	0	Median	0.25732	0.2496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44251000	29933000	14318000	0	0	0	14686000	6129200	8557100	23092000	17331000	5760800	6472200	6472200	0	50110	939	47171	302504;302505;302506	406621;406622;406623;406624	406624	702		4	
TGNFQVTELGR	0	Unmodified	1220.6149	0.61494998	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.829	2	1	1							1	1	2		46.647	45.917	2	4.7585E-05	41542	160511_QHF_FH_JSI11i_1	103.34	69.545			1.1076	1.0172	7.0737	2	2	Median	1.1143	0.96757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1009	1.0694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	210550000	108830000	101710000	105880000	52658000	53223000	0	0	0	104660000	56175000	48488000	0	0	0	50111	552	47172	302507;302508;302509;302510	406625;406626;406627;406628	406626			4	
TGNIPALVR	0	Unmodified	939.55016	0.55016488	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.02	2	4	3				2	3		1	4	5	4	46.467	42.016	2	0.00013839	36019	160511_QHF_FH_JSI11i_2	90.37	54.49			0.87884	1.0555	17.211	13	1	Median	1.5572	1.3198	NaN	1	0	Median	0.87074	1.05	1.5367	3	0	Plateau	1.1888	1.215	7.7333	5	0	Median	0.77246	0.83891	3.765	4	1	Median	2256200000	1088500000	1167700000	315760000	132920000	182840000	475480000	247180000	228300000	904170000	395680000	508490000	560750000	312700000	248050000	50112	1844	47173	302511;302512;302513;302514;302515;302516;302517;302518;302519;302520;302521;302522;302523;302524	406629;406630;406631;406632;406633;406634;406635;406636;406637;406638;406639;406640;406641;406642;406643;406644;406645;406646;406647	406642			19	
TGNLGNVVHIER	0	Unmodified	1307.6946	0.69459728	3109	Q6P5R6	RPL22L1	60S ribosomal protein L22-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.487		5	8							4	4	3	2	39.028	38.205	2;3	4.9722E-08	33309	160511_QHF_FH_JSI11i_3	124.07	106.26			1.0521	1.0113	37.303	11	4	Median	1.5082	1.2864	14.465	3	1	Median	1.0342	1.1641	13.241	3	1	Median	1.0933	1.0113	29.716	3	1	Plateau	0.54467	0.54919	3.7159	2	1	Median	1724800000	840830000	884010000	308710000	111180000	197540000	806310000	405140000	401180000	418290000	193040000	225250000	191530000	131480000	60050000	50113	3109	47174	302525;302526;302527;302528;302529;302530;302531;302532;302533;302534;302535;302536;302537	406648;406649;406650;406651;406652;406653;406654;406655;406656;406657;406658;406659;406660;406661;406662;406663;406664;406665	406648			18	
TGNQHFGYLYGR	0	Unmodified	1411.6633	0.66329715	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6.9	5.96			7						3	5	5			37.351	33.79	2;3	2.1976E-05	18723	160513_QHF_FH_JSI10Kac_6	85.845	80.951			1.4564	1.3589	20.723	7	3	Median	1.7613	1.4543	21.975	4	2	Median	0.89895	1.0569	12.946	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	298550000	135490000	163060000	160130000	66448000	93678000	138430000	69040000	69386000	0	0	0	0	0	0	50114	3686	47175	302538;302539;302540;302541;302542;302543;302544;302545;302546;302547	406666;406667;406668;406669;406670;406671;406672;406673;406674;406675;406676;406677	406676			12	
TGNSMPHPATGK	1	Unmodified	1196.5608	0.56080592	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	1	3	3	10.115	9.7925	2;3	1.0018E-05	7196	160511_QHF_FH_JSI12i_3	96.604	77.362			0.82379	1.0095	30.428	5	1	Median	1.5477	1.2948	NaN	1	0	Median	0.82379	1.0095	NaN	1	1	Median	1.1915	1.1411	NaN	1	0	Median	0.65887	0.69535	20.835	2	0	Median	624290000	331650000	292640000	69457000	35584000	33873000	135770000	68526000	67247000	167590000	76703000	90884000	251470000	150840000	100630000	50115	2409	47176	302548;302549;302550;302551;302552;302553;302554;302555	406678;406679;406680;406681;406682;406683;406684;406685	406685			8	
TGNVSSEPTK	1	Unmodified	1018.4931	0.49310351	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	7.4273	7.1326	2	0.0050484	4999	160511_QHF_FH_JSI12i_1	54.471	20.084			0.64852	0.71962	7.2167	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63657	0.75729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66069	0.68381	NaN	1	0	Median	114610000	62474000	52137000	0	0	0	60859000	32792000	28068000	0	0	0	53751000	29682000	24069000	50116	3816	47177	302556;302557	406686;406687;406688	406686			3	
TGPAAAQVQVGK	1	Unmodified	1125.6142	0.6142217	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	24.84	24.509	2	0.00026911	21527	160511_QHF_FH_JSI10i_1	76.143	54.679			0.82363	0.79576	24.341	3	1	Median	NaN	NaN	NaN	0	0	Median	0.49058	0.57275	NaN	1	0	Median	0.82363	0.79576	NaN	1	0	Median	0.86649	0.92125	NaN	1	1	Median	243170000	142620000	100550000	0	0	0	72401000	43405000	28996000	77329000	43600000	33730000	93439000	55616000	37823000	50117	2409	47178	302558;302559;302560	406689;406690;406691;406692;406693	406693			5	
TGPAATTLPDGAAAESLVESSEVAVIGFFK	1	Unmodified	2934.4862	0.4862338	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.99	7	9	4	1					6	7	7	6	7	102.16	100.08	2;3;4	4.9374E-233	51988	160513_QHF_FH_JSI9Kac_6	319.33	289.59			0.92991	0.89066	14.579	25	5	Median	1.2397	1.0241	13.065	7	3	Median	0.64334	0.7795	5.669	6	1	Median	0.98917	1.0088	11.338	5	0	Median	0.80177	0.85683	9.4288	7	1	Median	6672700000	3749500000	2923300000	1534000000	751070000	782950000	1685600000	1105900000	579750000	1658900000	795810000	863100000	1794200000	1096700000	697460000	50118	867	47179	302561;302562;302563;302564;302565;302566;302567;302568;302569;302570;302571;302572;302573;302574;302575;302576;302577;302578;302579;302580;302581;302582;302583;302584;302585;302586;302587	406694;406695;406696;406697;406698;406699;406700;406701;406702;406703;406704;406705;406706;406707;406708;406709;406710;406711;406712;406713;406714;406715;406716;406717;406718;406719;406720;406721;406722;406723;406724;406725;406726;406727;406728	406721			35	
TGPFAEHSNQLWNISAVPSWSK	1	Unmodified	2455.1921	0.19205789	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	89.073	88.656	3	7.4266E-10	73168	160511_QHF_FH_JSI9i_3	100.94	93.307			0.83479	0.87714	13.704	8	5	Median	0.9925	0.84893	32.281	2	1	Median	0.79801	0.95021	5.7047	2	0	Median	0.93235	0.8626	3.7051	2	2	Median	0.81563	0.83682	5.3128	2	2	Median	499290000	250550000	248740000	57139000	29011000	28128000	80823000	47472000	33351000	284270000	134640000	149630000	77048000	39423000	37625000	50119	2645	47180	302588;302589;302590;302591;302592;302593;302594;302595	406729;406730;406731;406732;406733;406734;406735;406736;406737;406738;406739;406740;406741;406742;406743;406744;406745	406741			17	
TGPLPPGPPPEIVIYQELR	0	Unmodified	2072.1306	0.13062683	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	3	12								3	3	5	4	100.2	100.07	2;3	3.6501E-09	86029	160511_QHF_FH_JSI12i_2	105	89.614			1.0369	1.0852	14.767	14	9	Median	1.2864	1.1258	5.283	2	1	Median	0.76533	0.90018	13.334	3	2	Median	1.1328	1.1518	12.382	5	4	Median	0.94062	1.0534	20.273	4	2	Median	458660000	233520000	225140000	47464000	20230000	27234000	99671000	52447000	47223000	198140000	99943000	98198000	113390000	60904000	52482000	50120	2581	47181	302596;302597;302598;302599;302600;302601;302602;302603;302604;302605;302606;302607;302608;302609;302610	406746;406747;406748;406749;406750;406751;406752;406753;406754;406755;406756;406757;406758;406759;406760;406761;406762;406763;406764	406747			19	
TGPNLHGLFGR	0	Unmodified	1167.6149	0.6148904	2143	P99999;CON__P62894	CYCS	Cytochrome c	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8	6.54		1	2						2	1	3		1	58.136	53.678	3	2.4514E-06	44742	160511_QHF_FH_JSI10i_3	98.754	94.911			0.85999	0.94929	17.388	5	2	Median	1.1363	0.94929	NaN	1	0	Median	0.71505	0.81635	24.396	3	1	Median	NaN	NaN	NaN	0	0	Median	0.85999	0.95379	NaN	1	1	Median	319500000	172800000	146690000	103430000	46659000	56770000	212900000	124160000	88739000	0	0	0	3168900	1983600	1185300	50121	2143	47182	302611;302612;302613;302614;302615	406765;406766;406767;406768;406769;406770	406766			6	
TGPPMGSR	0	Unmodified	801.38032	0.38032236	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.71	0.7	3	3	1							2	2	1	2	11.323	10.942	2	0.0087012	8820	160511_QHF_FH_JSI10i_1	56.721	39.16			0.97262	1.0452	12.228	7	0	Median	1.3979	1.1831	17.515	2	0	Median	0.83383	1.0191	3.6712	2	0	Median	1.0192	1.0452	NaN	1	0	Median	0.91521	0.93898	5.2748	2	0	Median	2039500000	1082800000	956740000	485220000	224030000	261190000	720450000	418000000	302440000	480210000	254710000	225500000	353660000	186050000	167600000	50122	2619	47183	302616;302617;302618;302619;302620;302621;302622	406771;406772;406773	406771			3	
TGPQNGWNDPPALNR	0	Unmodified	1635.7754	0.7753668	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.355	45.952	2	0.0024081	41480	160511_QHF_FH_JSI11i_1	69.451	38.887			0.45032	0.43166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45032	0.43166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22556000	15120000	7437000	0	0	0	0	0	0	22556000	15120000	7437000	0	0	0	50123	636	47184	302623	406774	406774			1	
TGPQNGWNDPPALNRVPK	1	Unmodified	1959.9915	0.99150758	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			52.158	50.583	3	0.0013531	41366	160511_QHF_FH_JSI9i_3	50.653	46.385			0.98555	0.954	16.121	2	0	Median	1.3134	1.0692	NaN	1	0	Median	0.73952	0.85122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99192000	49576000	49616000	47504000	20193000	27311000	51687000	29383000	22305000	0	0	0	0	0	0	50124	636	47185	302624;302625	406775;406776;406777	406777			3	
TGPSAAQAGK	1	Unmodified	886.45084	0.45084476	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.55	7.2127	2	0.00031588	4748	160511_QHF_FH_JSI9i_1	84.083	55.66			0.90123	0.7755	11.42	4	2	Linear	0.93226	0.75488	NaN	1	0	Median	0.789	0.9405	NaN	1	1	Median	0.83134	0.79668	NaN	1	0	Median	0.70415	0.7255	NaN	1	1	Median	685590000	423920000	261670000	180980000	107490000	73495000	226220000	139990000	86233000	151060000	92694000	58362000	127330000	83749000	43579000	50125	2409	47186	302626;302627;302628;302629	406778;406779;406780;406781;406782	406781			5	
TGPTQQQVEGR	0	Unmodified	1199.5895	0.58946351	4453	Q9BUT9	FAM195A	Protein FAM195A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		11.866	11.63	2	0.00065763	9393	160511_QHF_FH_JSI10i_1	82.954	66.62			0.78242	0.912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78242	0.912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72181000	40876000	31305000	0	0	0	72181000	40876000	31305000	0	0	0	0	0	0	50126	4453	47187	302630;302631;302632	406783;406784;406785	406784			3	
TGPTVTQVK	1	Unmodified	929.5182	0.51819605	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	3									2		1		19.038	18.412	2	0.00036231	15443	160511_QHF_FH_JSI9i_1	86.136	47.975			1.386	1.2198	38.909	2	2	Median	1.152	0.92643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6676	1.6062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	483550000	196090000	287460000	177340000	85772000	91566000	0	0	0	306210000	110320000	195900000	0	0	0	50127	2409	47188	302633;302634;302635	406786;406787;406788	406788			3	
TGPVTLHTQTAIHFAEQIAK	1	Unmodified	2162.1484	0.14840216	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	3	1		74.654	73.448	3;4	3.181E-05	60735	160511_QHF_FH_JSI9i_3	58.564	50.475			1.1283	1.0519	24.961	6	2	Median	1.2945	1.0658	22.539	3	1	Median	0.84358	0.98527	44.913	2	1	Median	1.0958	1.0381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156660000	69243000	87412000	72278000	30699000	41579000	42683000	19557000	23126000	41694000	18986000	22708000	0	0	0	50128	134	47189	302636;302637;302638;302639;302640;302641;302642	406789;406790;406791;406792;406793;406794;406795;406796;406797;406798	406797			10	
TGQAAELGGLLK	1	Unmodified	1156.6452	0.64518747	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	56.55	55.895	2	1.2125E-10	48352	160511_QHF_FH_JSI11i_2	129	81.919			0.69546	0.83831	30.833	4	3	Linear	2.0883	1.7299	NaN	1	1	Median	0.69663	0.83102	NaN	1	0	Median	1.1987	1.1756	NaN	1	1	Median	1.2884	1.3795	NaN	1	1	Median	905000000	404410000	500590000	199210000	74982000	124230000	187450000	98532000	88916000	249590000	117840000	131750000	268750000	113060000	155690000	50129	109	47190	302643;302644;302645;302646;302647;302648;302649;302650	406799;406800;406801;406802;406803;406804;406805;406806;406807;406808	406807			10	
TGQAPGYSYTAANK	1	Unmodified	1427.6681	0.66810776	2143	P99999	CYCS	Cytochrome c	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.62	8	2	4		1	6	2			3	7	7	6	26.147	21.889	2;3	1.2318E-29	20159	160511_QHF_FH_JSI10i_1	184.03	153.47			0.9113	0.99248	18.107	22	4	Median	1.5711	1.2381	9.505	3	0	Plateau	0.86148	1.0035	15.204	6	1	Median	1.0714	1.0623	10.818	7	1	Median	0.69889	0.75974	10.927	6	2	Median	6109400000	3064800000	3044600000	1318200000	493990000	824220000	1279200000	702880000	576280000	1674400000	814890000	859500000	1837700000	1053100000	784620000	50130	2143	47191	302651;302652;302653;302654;302655;302656;302657;302658;302659;302660;302661;302662;302663;302664;302665;302666;302667;302668;302669;302670;302671;302672;302673	406809;406810;406811;406812;406813;406814;406815;406816;406817;406818;406819;406820;406821;406822;406823;406824;406825;406826;406827;406828;406829;406830;406831;406832;406833;406834;406835;406836;406837;406838;406839;406840;406841;406842;406843;406844;406845;406846	406828			37	
TGQAPGYSYTAANKNK	2	Acetyl (K)	1711.8166	0.81656291	2143	P99999	CYCS	Cytochrome c	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	13	0						3					1	1	1	37.888	29.099	3	0.0017325	16623	160513_QHF_FH_JSI12Kac_3	66.965	54.819			1.1088	1.0652	69.531	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1337	1.3358	NaN	1	0	Median	1.1088	1.0652	NaN	1	0	Median	0.34117	0.36354	NaN	1	1	Median	5825100	3643100	2182000	0	0	0	1505700	757030	748700	2774100	1469000	1305100	1545300	1417100	128210	50131	2143	47192	302674;302675;302676	406847;406848	406848	2239		2	
TGQATVASGIPAGWMGLDCGPESSK	1	Unmodified	2476.1363	0.13625884	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	2	3	82.557	82.078	2;3	2.057E-32	72952	160511_QHF_FH_JSI9i_1	177.67	165.69			0.92495	1.0184	12.628	11	6	Median	1.3817	1.1484	17.954	3	2	Median	0.88074	1.0404	5.2167	3	2	Median	0.89064	0.87194	2.1183	2	0	Median	0.96949	1.0184	5.3084	3	2	Median	949110000	469260000	479850000	134750000	54523000	80227000	311590000	158270000	153310000	244320000	118080000	126240000	258450000	138390000	120070000	50132	775	47193	302677;302678;302679;302680;302681;302682;302683;302684;302685;302686;302687	406849;406850;406851;406852;406853;406854;406855;406856;406857;406858;406859;406860;406861;406862;406863;406864;406865;406866;406867;406868;406869;406870;406871;406872	406872			24	
TGQATVASGIPAGWMGLDCGPESSKK	2	Unmodified	2604.2312	0.23122186	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.75	2	4	5							1	2	4	4	73.281	72.837	3;4	2.5105E-32	64946	160511_QHF_FH_JSI11i_3	153.77	146.9			0.90889	0.94186	10.976	11	3	Median	1.218	1.0536	NaN	1	0	Median	0.89255	1.0762	5.353	2	0	Median	0.88615	0.85919	12.195	4	1	Median	0.91864	0.92776	8.8017	4	2	Median	1209800000	646360000	563450000	77658000	33794000	43864000	220910000	124180000	96731000	543470000	299590000	243880000	367770000	188790000	178980000	50133	775	47194	302688;302689;302690;302691;302692;302693;302694;302695;302696;302697;302698	406873;406874;406875;406876;406877;406878;406879;406880;406881;406882;406883;406884;406885;406886;406887;406888;406889;406890;406891;406892;406893;406894;406895;406896;406897	406875			24	
TGQATVASGIPAGWMGLDCGPESSKK	2	Oxidation (M)	2620.2261	0.22613648	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									1	2	63.659	63.468	3	1.1649E-07	54782	160511_QHF_FH_JSI12i_3	68.895	65.301			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50134	775	47194	302699;302700;302701	406898;406899;406900	406899		288	3	
TGQAVAVR	0	Unmodified	800.45045	0.45045083	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	9.4134	9.0427	2	0.046833	6970	160511_QHF_FH_JSI12i_1	37.974	11.559			0.69166	0.70508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69166	0.70508	NaN	1	0	Median	83348000	45958000	37390000	0	0	0	0	0	0	0	0	0	83348000	45958000	37390000	50135	1882	47195	302702	406901	406901			1	
TGQEIPVNVR	0	Unmodified	1111.5986	0.59857163	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		34.056	33.814	2	0.0027907	30370	160511_QHF_FH_JSI11i_1	60.398	35.504			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50136	4160	47196	302703	406902	406902			1	
TGQEVVFVAEPDNK	1	Unmodified	1531.7518	0.75183739	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.7	8				3	3				2	5	3	4	51.81	48.231	2;3	7.9306E-52	42618	160511_QHF_FH_JSI9i_1	215.02	208			0.82517	0.91656	21.01	12	1	Median	1.2239	1.0159	6.6757	2	0	Median	0.74577	0.88764	24.94	4	1	Median	0.93169	0.90541	14.963	3	0	Plateau	0.63251	0.66461	14.748	3	0	Plateau	1701300000	901340000	799990000	399890000	151480000	248410000	434020000	258320000	175700000	442270000	215060000	227210000	425150000	276480000	148670000	50137	817	47197	302704;302705;302706;302707;302708;302709;302710;302711;302712;302713;302714;302715;302716;302717	406903;406904;406905;406906;406907;406908;406909;406910;406911;406912;406913;406914;406915;406916;406917;406918;406919;406920;406921;406922;406923;406924	406917			21	
TGQEYKPGNPPAEIGQNISSNSSASILESK	2	Unmodified	3102.5106	0.51055107	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3							2	3	5	3	63.366	62.773	3;4	7.843E-105	55881	160511_QHF_FH_JSI11i_3	242.02	231.97			0.93016	0.9785	16.698	12	3	Median	1.4014	1.1796	2.7032	2	0	Median	0.84776	1.0246	4.0865	2	0	Median	0.97526	0.96189	9.4484	5	3	Median	0.68949	0.77478	6.598	3	0	Median	2416500000	1240800000	1175700000	394840000	168050000	226790000	527330000	282150000	245180000	1061700000	543810000	517920000	432590000	246740000	185850000	50138	878	47198	302718;302719;302720;302721;302722;302723;302724;302725;302726;302727;302728;302729;302730	406925;406926;406927;406928;406929;406930;406931;406932;406933;406934;406935;406936;406937;406938;406939;406940;406941;406942;406943;406944;406945;406946;406947;406948;406949;406950;406951;406952;406953;406954;406955;406956;406957	406928			33	
TGQGDYPLNNELDK	1	Unmodified	1562.7213	0.72126554	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.953	42.298	2	6.5918E-10	37995	160511_QHF_FH_JSI10i_1	149.26	123.32			0.97373	1.0365	19.878	4	2	Median	1.4883	1.1939	NaN	1	1	Median	0.79404	0.93945	NaN	1	0	Median	1.1941	1.1435	NaN	1	1	Median	0.75887	0.77458	NaN	1	0	Median	132190000	67798000	64387000	26398000	9114400	17284000	42957000	25262000	17694000	30938000	11759000	19179000	31893000	21663000	10230000	50139	615	47199	302731;302732;302733;302734	406958;406959;406960;406961;406962	406960			5	
TGQIKEVER	1	Acetyl (K)	1100.5826	0.58258722	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	1	0	0	1		By matching	By MS/MS		13	0						2					1	1		28.44	20.442	2	0.051991	12497	160513_QHF_FH_JSI11Kac_3	43.308	18.532			0.67105	0.71983	118.72	2	0	Median	NaN	NaN	NaN	0	0	Median	1.417	1.6665	NaN	1	0	Median	0.31779	0.31092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8836100	5213600	3622500	0	0	0	4840400	2072200	2768200	3995700	3141400	854310	0	0	0	50140	1807;2155	47200	302735;302736	406963	406963			1	
TGQINGDLLIYHVLLTLK	1	Unmodified	2010.1514	0.15136227	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	96.61	87.168	3	8.3682E-12	47565	160513_QHF_FH_JSI12Kac_6	123.19	114.69			0.44095	0.47813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44095	0.47813	NaN	1	0	Median	59054000	40669000	18384000	0	0	0	0	0	0	0	0	0	59054000	40669000	18384000	50141	1193	47201	302737	406964	406964			1	
TGQLFHIDFGHILGNFK	1	Unmodified	1943.0054	0.0053667345	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			89.851	82.633	4	0.024342	47444	160513_QHF_FH_JSI10Kac_6	34.202	30.234			0.94111	0.94538	16.108	2	0	Median	0.98345	0.84361	NaN	1	0	Median	0.9006	1.0594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46376000	28633000	17744000	22687000	12669000	10018000	23689000	15964000	7725300	0	0	0	0	0	0	50142	1534	47202	302738;302739	406965;406966	406966			0	
TGQLFLK	1	Unmodified	805.46979	0.46978929	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	39.182	38.38	2	0.01549	32770	160511_QHF_FH_JSI12i_2	64.567	30.564			0.54267	0.5471	42.647	5	0	Median	0.69478	0.60074	NaN	1	0	Median	0.34331	0.43043	NaN	1	0	Median	0.54267	0.5471	NaN	1	0	Median	0.42552	0.44097	79.684	2	0	Median	447650000	281780000	165860000	58538000	34796000	23742000	97364000	70320000	27043000	155710000	82386000	73324000	136030000	94281000	41754000	50143	3101	47203	302740;302741;302742;302743;302744	406967;406968;406969;406970	406967			4	
TGQMLLAQGLILHFLGR	0	Unmodified	1867.0502	0.050208437	4032	Q96DT6	ATG4C	Cysteine protease ATG4C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	96.9	88.491	3	3.8285E-97	52642	160513_QHF_FH_JSI10Kac_6	236.43	213.96			1.2085	0.88745	15.92	4	0	Linear	1.3455	1.1433	NaN	1	0	Median	0.81966	0.96655	NaN	1	0	Median	1.0919	1.0266	NaN	1	0	Median	1.3376	1.389	NaN	1	0	Median	634610000	315600000	319010000	123460000	56608000	66849000	246950000	130760000	116200000	148110000	76203000	71910000	116080000	52030000	64055000	50144	4032	47204	302745;302746;302747;302748	406971;406972	406972			2	
TGQPMINLYTDR	0	Unmodified	1407.6816	0.68164933	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	2	3	1	54.524	53.817	2	1.6141E-05	46657	160511_QHF_FH_JSI11i_2	113.22	68.471			0.98144	0.98709	11.066	5	4	Median	1.0839	0.90844	15.935	2	2	Median	0.80404	0.94614	NaN	1	1	Median	1.0425	1.0385	7.1754	2	1	Median	NaN	NaN	NaN	0	0	Median	1017100000	561820000	455290000	255470000	135840000	119640000	214550000	111960000	102590000	547090000	314020000	233060000	0	0	0	50145	1442	47205	302749;302750;302751;302752;302753;302754;302755;302756	406973;406974;406975;406976;406977;406978;406979;406980;406981	406980			9	
TGQPMINLYTDRETGK	1	Oxidation (M)	1838.8833	0.88326227	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	39.265	38.703	3	0.0002622	33971	160511_QHF_FH_JSI11i_3	72.433	61.388			0.985	1.1232	28.639	3	0	Median	NaN	NaN	NaN	0	0	Median	0.985	1.1232	NaN	1	0	Median	1.3222	1.2342	NaN	1	0	Median	0.70339	0.72185	NaN	1	0	Median	248030000	131270000	116770000	0	0	0	48028000	30038000	17990000	134210000	61452000	72755000	65797000	39777000	26020000	50146	1442	47206	302757;302758;302759;302760	406982;406983;406984;406985;406986	406982		1119	5	
TGQPMINLYTDRETGK	1	Unmodified	1822.8883	0.88834765	1442	P35637	FUS	RNA-binding protein FUS	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.89	2	7	6					1	4	4	6	6	4	49.891	46.947	2;3	9.0788E-21	41141	160511_QHF_FH_JSI9i_2	173.06	157.86			0.9147	1.0151	20.467	20	1	Median	1.1971	1.0151	14.055	4	0	Median	0.85034	0.98391	4.9018	6	0	Median	1.3187	1.2666	6.6406	6	0	Median	0.71012	0.74157	7.2467	4	1	Median	7470800000	3329700000	4141100000	1443500000	592390000	851130000	2192100000	1102700000	1089500000	3220100000	1309600000	1910500000	615050000	325060000	289990000	50147	1442	47206	302761;302762;302763;302764;302765;302766;302767;302768;302769;302770;302771;302772;302773;302774;302775;302776;302777;302778;302779;302780	406987;406988;406989;406990;406991;406992;406993;406994;406995;406996;406997;406998;406999;407000;407001;407002;407003;407004;407005;407006;407007;407008;407009;407010;407011;407012;407013;407014;407015;407016;407017;407018;407019;407020;407021;407022;407023;407024	407007			38	
TGQPSAPGDTSVNGPV	0	Unmodified	1482.6951	0.69505079	2887	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.63	38.249	2	0.0043661	34302	160511_QHF_FH_JSI10i_1	54.471	39.205			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50148	2887	47207	302781	407025	407025			1	
TGQQAEPLVVDLK	1	Unmodified	1396.7562	0.75619449	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.523	55.864	2	6.2998E-06	50678	160511_QHF_FH_JSI12i_1	127.56	112.41			0.56293	0.58914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56293	0.58914	NaN	1	1	Median	124240000	69624000	54616000	0	0	0	0	0	0	0	0	0	124240000	69624000	54616000	50149	2137	47208	302782	407026	407026			1	
TGQSADSGTIK	1	Unmodified	1063.5146	0.51456723	4870	Q9HD26	GOPC	Golgi-associated PDZ and coiled-coil motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		7.4845	7.3674	2	7.5124E-14	5241	160511_QHF_FH_JSI10i_1	139.15	101.99			0.94492	0.92862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94492	0.92862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	119170000	57130000	62044000	0	0	0	0	0	0	119170000	57130000	62044000	0	0	0	50150	4870	47209	302783;302784;302785	407027;407028;407029	407028			3	
TGQSLATLHAHK	1	Unmodified	1262.6731	0.67313356	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	3	1	13.446	12.991	2;3	1.4993E-05	10328	160511_QHF_FH_JSI11i_3	128.01	99.841			0.88795	0.89216	23.094	6	1	Median	1.2782	1.0529	15.099	2	0	Median	0.7865	0.90266	NaN	1	0	Median	0.88795	0.83223	8.1793	2	1	Median	0.55154	0.58328	NaN	1	0	Median	340240000	171630000	168600000	106970000	43907000	63068000	49895000	25360000	24534000	124440000	62648000	61791000	58927000	39717000	19210000	50151	4591	47210	302786;302787;302788;302789;302790;302791;302792	407030;407031;407032;407033;407034;407035;407036	407031			7	
TGQYSGIYDCAK	1	Unmodified	1361.5922	0.59216562	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	3	1	32.966	30.531	2	9.7171E-06	27330	160511_QHF_FH_JSI10i_1	118.9	108.1			0.8121	0.85588	10.824	5	2	Median	1.1921	1.0079	NaN	1	1	Median	0.72459	0.86233	NaN	1	0	Median	0.8459	0.83501	3.4905	2	1	Median	0.73223	0.74934	NaN	1	0	Median	285140000	160100000	125040000	30846000	12209000	18636000	82587000	47897000	34690000	90376000	55526000	34850000	81334000	44471000	36862000	50152	3071	47211	302793;302794;302795;302796;302797;302798	407037;407038;407039;407040;407041;407042;407043;407044;407045	407042			9	
TGREDIANLADEFK	1	Unmodified	1577.7686	0.76855009	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	3.83		6	3					1		2	2	4	2	63.794	62.198	2;3	9.6384E-07	54722	160511_QHF_FH_JSI9i_2	106.52	94.359			1.0065	1.0417	29.349	10	0	Median	1.5213	1.302	1.4767	2	0	Median	0.93487	1.1603	7.2487	2	0	Median	1.0327	0.99952	8.0244	4	0	Median	0.58806	0.58726	9.477	2	0	Median	1902400000	995290000	907070000	340340000	136650000	203680000	473860000	260420000	213440000	678510000	326710000	351800000	409660000	271510000	138150000	50153	4315	47212	302799;302800;302801;302802;302803;302804;302805;302806;302807;302808	407046;407047;407048;407049;407050;407051;407052;407053;407054;407055;407056;407057;407058;407059;407060;407061	407049			16	
TGRFEEAAGAAPCR	0	Unmodified	1491.6889	0.68885998	5635	Q9Y4P3	TBL2	Transducin beta-like protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				21.57	20.3	3	0.002528	16344	160511_QHF_FH_JSI9i_3	45.614	42.292			1.943	1.6453	NaN	1	1	Median	1.943	1.6453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11414000	4009900	7404000	11414000	4009900	7404000	0	0	0	0	0	0	0	0	0	50154	5635	47213	302809	407062	407062			1	
TGRVMLGETNPADSK	1	Unmodified	1574.7723	0.77225526	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	0	1	By MS/MS				3	0			1							1				27.705	26.337	3	0.047108	21439	160511_QHF_FH_JSI9i_3	32.997	14.174			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16444000	0	16444000	16444000	0	16444000	0	0	0	0	0	0	0	0	0	50155	1209;1079	47214	302810	407063	407063			1	
TGSAVAPVHPPNR	0	Unmodified	1301.684	0.6840326	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.456	19.47	2	0.00043933	15794	160511_QHF_FH_JSI12i_3	70.1	54.438			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50156	3483	47215	302811	407064	407064			1	
TGSAVPR	0	Unmodified	686.37114	0.37113788	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		2	0		3								1	1	1		6.294	5.9474	2	0.022022	3863	160511_QHF_FH_JSI9i_2	56.27	5.4148			0.95448	0.94003	11.388	3	0	Plateau	1.2287	1.0379	NaN	1	0	Median	0.95448	1.1797	NaN	1	0	Median	0.93133	0.94003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	757640000	351260000	406380000	240030000	101420000	138610000	182570000	91197000	91377000	335040000	158640000	176390000	0	0	0	50157	1787	47216	302812;302813;302814	407065	407065			1	
TGSEESTMMSYFSK	1	Unmodified	1583.6484	0.64835987	569	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	65.124	64.649	2	0.00078251	58506	160511_QHF_FH_JSI10i_1	87.241	80.708			0.75586	0.84896	49.521	3	2	Median	NaN	NaN	NaN	0	0	Median	0.75586	0.84896	NaN	1	1	Median	1.2262	1.1546	NaN	1	0	Median	0.42358	0.43808	NaN	1	1	Median	69271000	43748000	25523000	0	0	0	20447000	14369000	6078400	24847000	10408000	14439000	23976000	18972000	5004900	50158	569	47217	302815;302816;302817	407066;407067;407068	407068			3	
TGSESSIDR	0	Unmodified	950.4305	0.43050325	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	7.2818	3.9787	2	0.00013044	4345	160511_QHF_FH_JSI11i_1	91.069	54.368			0.81905	0.94906	24.032	7	0	Median	1.5345	1.2624	NaN	1	0	Median	0.77937	0.90839	7.4591	2	0	Median	1.0646	1.0313	11.755	2	0	Median	0.63111	0.66981	3.2625	2	0	Median	1436200000	707690000	728510000	371980000	151530000	220450000	392950000	195110000	197840000	328940000	148810000	180130000	342330000	212230000	130090000	50159	5708	47218	302818;302819;302820;302821;302822;302823;302824	407069;407070;407071;407072;407073;407074;407075;407076;407077;407078	407070			10	
TGSESSQTGTSTTSSR	0	Unmodified	1572.6863	0.6863366	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	5.5	4	1		1	3	3				1	3	5	3	5.583	0.83616	2	0	3000	160511_QHF_FH_JSI12i_1	393.9	383.89			0.72281	0.8672	16.428	11	0	Median	1.3063	1.0756	NaN	1	0	Median	0.67459	0.80541	6.7572	3	0	Median	1.0768	1.05	4.2769	4	0	Median	0.67583	0.7159	2.5051	3	0	Plateau	2709800000	1444800000	1265100000	578300000	235970000	342330000	727800000	440980000	286830000	607390000	294630000	312760000	796320000	473180000	323150000	50160	1237	47219	302825;302826;302827;302828;302829;302830;302831;302832;302833;302834;302835;302836	407079;407080;407081;407082;407083;407084;407085;407086;407087;407088;407089;407090;407091;407092;407093;407094;407095;407096;407097;407098;407099	407083			21	
TGSESSVDR	0	Unmodified	936.41485	0.41485319	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.1348	4.8193	2	0.0033228	2761	160511_QHF_FH_JSI12i_1	60.828	42.046			0.98922	1.0483	23.956	4	0	Median	1.516	1.2459	NaN	1	0	Median	0.99782	1.1606	NaN	1	0	Median	0.9807	0.9469	NaN	1	0	Median	0.70857	0.73043	NaN	1	0	Median	304380000	152310000	152070000	47111000	21244000	25867000	104710000	48215000	56495000	80245000	38244000	42001000	72315000	44610000	27704000	50161	5234	47220	302837;302838;302839;302840	407100;407101;407102	407101			3	
TGSGGVASSSESNR	0	Unmodified	1294.5749	0.57493566	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.59	5	1				3				1	4	2	2	5.8955	2.9786	2	1.1341E-66	3404	160511_QHF_FH_JSI12i_1	238.92	215.49			0.79323	0.92123	20.226	8	2	Median	1.4762	1.2147	NaN	1	0	Median	0.72035	0.84376	8.4534	3	2	Plateau	1.0788	1.0637	2.4372	2	0	Median	0.65395	0.70142	4.9717	2	0	Median	2003100000	1051400000	951670000	371690000	138000000	233690000	784710000	445490000	339220000	459830000	240910000	218920000	386860000	227020000	159840000	50162	2672	47221	302841;302842;302843;302844;302845;302846;302847;302848;302849	407103;407104;407105;407106;407107;407108;407109;407110;407111;407112;407113;407114;407115;407116;407117	407106			15	
TGSGLNSFYDQR	0	Unmodified	1343.6106	0.61059288	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	40.893	40.133	2	1.0216E-41	35001	160511_QHF_FH_JSI9i_2	204.17	180.02			1.095	1.2003	19.481	6	0	Median	1.5687	1.3275	NaN	1	0	Median	0.88607	1.0656	19.742	2	0	Median	1.2191	1.2003	0.68936	2	0	Median	0.74661	0.80412	NaN	1	0	Median	361640000	187850000	173780000	40819000	15890000	24929000	128190000	69652000	58537000	135930000	65926000	70003000	56698000	36386000	20312000	50163	1685	47222	302850;302851;302852;302853;302854;302855	407118;407119;407120;407121;407122;407123;407124;407125;407126;407127;407128	407123			11	
TGSGQGPSSTGQPGR	0	Unmodified	1372.6331	0.63311924	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		6.4065	6.2953	2	0.0017823	4105	160511_QHF_FH_JSI11i_1	72.089	60.042			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50164	3405	47223	302856	407129	407129			1	
TGSHSEPQAR	0	Unmodified	1068.4948	0.49483484	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	6	5.2			3					1		1		2	1	3.2664	-1.4219	3	5.5782E-05	889	160511_QHF_FH_JSI11i_3	84.054	73.106			1.0839	0.96081	14.671	2	0	Median	1.2526	1.0658	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93786	0.86613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59981000	30035000	29946000	6548500	3169300	3379200	0	0	0	53433000	26866000	26567000	0	0	0	50165	5147	47224	302857;302858;302859;302860	407130;407131;407132;407133	407131			4	
TGSISSSVSVPAKPER	1	Unmodified	1600.842	0.84204938	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.75	5.36		1	2					1		2	1	1		35.565	32.043	3	5.9916E-05	26749	160511_QHF_FH_JSI10i_3	81.656	71.303			1.2037	1.0875	17.17	4	1	Median	1.493	1.2729	21.903	2	1	Median	0.87335	1.0114	NaN	1	0	Median	1.0975	1.0847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134620000	64906000	69714000	55999000	20097000	35902000	69434000	40190000	29244000	9187000	4619000	4568000	0	0	0	50166	3128	47225	302861;302862;302863;302864	407134;407135;407136;407137;407138;407139;407140	407135			7	
TGSMLQNGVSDFETK	1	Unmodified	1612.7403	0.74028643	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.651	56.161	2	2.8413E-06	49890	160511_QHF_FH_JSI9i_1	87.641	74.66			0.68787	0.77312	21.731	3	3	Median	NaN	NaN	NaN	0	0	Median	0.66543	0.77312	NaN	1	1	Median	1.0988	1.0563	NaN	1	1	Median	0.68787	0.69538	NaN	1	1	Median	114070000	67129000	46938000	0	0	0	48980000	31671000	17309000	40384000	21859000	18525000	24703000	13598000	11104000	50167	3378	47226	302865;302866;302867;302868	407141;407142;407143;407144	407144			4	
TGSNEFK	1	Unmodified	781.36063	0.36063277	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								1	2	1	1	7.9813	7.6069	2	0.0572	5513	160511_QHF_FH_JSI12i_1	41.502	26.727			0.87137	1.0357	21.386	5	0	Median	1.5272	1.2445	NaN	1	0	Median	0.73954	0.88187	22.736	2	0	Median	1.1491	1.1337	NaN	1	0	Median	0.78051	0.82255	NaN	1	0	Median	1472900000	784390000	688510000	277200000	112500000	164710000	493360000	294370000	198990000	405120000	198230000	206890000	297220000	179290000	117930000	50168	359	47227	302869;302870;302871;302872;302873	407145	407145			1	
TGSPGPELLFHEGQQK	1	Unmodified	1723.8529	0.85294842	2515	Q14202	ZMYM3	Zinc finger MYM-type protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	52.04	51.099	3	0.00071286	43984	160511_QHF_FH_JSI12i_2	57.703	46.759			1.6217	1.9813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6217	1.9813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44946000	17196000	27750000	0	0	0	44946000	17196000	27750000	0	0	0	0	0	0	50169	2515	47228	302874;302875	407146;407147	407146			2	
TGSPGSPGAGGVQSTAK	1	Unmodified	1457.711	0.71103521	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	15.369	13.522	2	9.3674E-17	11041	160511_QHF_FH_JSI11i_1	125.53	103.33			1.0042	0.98514	13.78	5	1	Median	1.198	0.98514	NaN	1	0	Median	0.86455	1.0308	NaN	1	0	Median	1.0673	1.0289	11.16	2	1	Median	0.74736	0.77076	NaN	1	0	Median	490540000	248040000	242500000	110630000	47716000	62914000	132130000	76707000	55424000	129840000	61141000	68694000	117940000	62476000	55467000	50170	312	47229	302876;302877;302878;302879;302880;302881	407148;407149;407150;407151;407152;407153;407154;407155;407156	407149			9	
TGSPGSPGAGGVQSTAKK	2	Unmodified	1585.806	0.80599822	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		10.842	10.842	3	1.2536E-07	8393	160511_QHF_FH_JSI11i_3	118.53	105.39			1.0538	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.0092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30524000	15289000	15234000	0	0	0	0	0	0	30524000	15289000	15234000	0	0	0	50171	312	47230	302882	407157;407158	407157			2	
TGSPLDHLPIAPSNLPMPEGNSAFTQQVR	0	Unmodified	3073.5291	0.52911844	3930	Q93074	MED12	Mediator of RNA polymerase II transcription subunit 12	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			96.796	96.612	3	0.0017067	85647	160511_QHF_FH_JSI10i_2	35.55	28.974			1.321	1.6053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.321	1.6053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14772000	10447000	4324900	0	0	0	14772000	10447000	4324900	0	0	0	0	0	0	50172	3930	47231	302883;302884	407159;407160	407159			2	
TGSQGQCTQVR	0	Unmodified	1220.5568	0.55678317	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.58	4	4	3			3	3			2	5	5	5	6.2238	3.2721	2	1.0093E-72	3507	160511_QHF_FH_JSI10i_1	244.16	185.45			0.861	0.99298	18.964	17	0	Median	1.5435	1.2851	3.1414	2	0	Median	0.875	1.024	9.0515	5	0	Median	0.73658	0.80162	7.8412	5	0	Linear	0.92231	0.99608	18.362	5	0	Median	4701700000	2382000000	2319800000	687110000	287900000	399210000	1193400000	656380000	537020000	1270600000	710660000	559920000	1550600000	727030000	823600000	50173	2028	47232	302885;302886;302887;302888;302889;302890;302891;302892;302893;302894;302895;302896;302897;302898;302899;302900;302901	407161;407162;407163;407164;407165;407166;407167;407168;407169;407170;407171;407172;407173;407174;407175;407176;407177;407178;407179;407180;407181;407182;407183;407184;407185	407172			25	
TGSQYDIQDAIDK	1	Unmodified	1452.6733	0.67325272	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		48.753	48.068	2	3.9097E-15	43518	160511_QHF_FH_JSI11i_1	155.66	130.81			1.092	1.0521	8.9579	3	2	Median	1.3197	1.0706	NaN	1	1	Median	0.77873	0.90944	NaN	1	1	Median	1.092	1.0521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1355700000	627240000	728510000	422680000	163170000	259520000	363410000	191360000	172050000	569660000	272720000	296940000	0	0	0	50174	1085	47233	302902;302903;302904	407186;407187;407188;407189	407187			4	
TGSYGALAEITASK	1	Unmodified	1367.6933	0.69325988	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.829	1	1	2							1	1	1	1	56.382	56.185	2	1.1534E-05	48150	160511_QHF_FH_JSI12i_2	85.536	69.282			0.98713	1.0389	2.3022	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88572	1.0221	NaN	1	1	Median	1.1002	1.0559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139220000	68444000	70777000	0	0	0	84742000	43253000	41488000	54480000	25191000	29289000	0	0	0	50175	227	47234	302905;302906;302907;302908	407190;407191;407192;407193	407191			4	
TGTAEMSSILEER	0	Unmodified	1422.6661	0.66605885	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.63	4	6	5				2	1		4	6	3	5	57.176	54.578	2	6.6834E-53	49389	160511_QHF_FH_JSI11i_1	218.15	197.85			0.87925	0.93953	21.681	17	8	Median	1.4078	1.1738	18.226	4	0	Median	0.78857	0.95633	9.1668	6	4	Median	0.95302	0.91864	5.3437	3	0	Median	0.63446	0.69204	5.5982	4	4	Linear	12730000000	6747600000	5982400000	1862000000	826360000	1035600000	3849600000	2115300000	1734300000	2973500000	1327000000	1646500000	4045000000	2479000000	1566000000	50176	1263	47235	302909;302910;302911;302912;302913;302914;302915;302916;302917;302918;302919;302920;302921;302922;302923;302924;302925;302926	407194;407195;407196;407197;407198;407199;407200;407201;407202;407203;407204;407205;407206;407207;407208;407209;407210;407211;407212;407213;407214;407215;407216;407217;407218	407197			25	
TGTAEMSSILEER	0	Oxidation (M)	1438.661	0.66097347	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.42	5.81	3	1				5	2	1		3	3	3	3	35.595	26.185	2	4.9162E-07	6611	160513_QHF_FH_JSI9Kac_3	142.1	116.71			1.0342	1.0862	35.887	10	3	Median	1.3355	1.0846	30.087	3	2	Plateau	0.72604	0.87076	13.8	3	1	Plateau	1.7452	1.6601	57.601	2	0	Median	0.74179	0.7891	6.4516	2	0	Median	199450000	91877000	107570000	98591000	37165000	61425000	85853000	47034000	38819000	7822200	3544100	4278200	7185700	4134000	3051700	50177	1263	47235	302927;302928;302929;302930;302931;302932;302933;302934;302935;302936;302937;302938	407219;407220;407221;407222;407223;407224;407225;407226;407227;407228;407229	407225		891	11	
TGTAYTFFTPNNIK	1	Unmodified	1573.7777	0.77765821	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.55	7	7	7				1	8	5	8	9	9	9	72.321	67.95	2;3	3.1891E-177	61084	160511_QHF_FH_JSI11i_3	313.3	295.48			0.90204	0.99945	25.944	35	4	Median	1.3285	1.1305	25.11	8	1	Median	0.80982	0.99515	13.264	9	1	Median	1.1174	1.1089	28.279	9	1	Median	0.70341	0.77305	12.631	9	1	Median	4523500000	2314300000	2209200000	745980000	319750000	426230000	1048700000	606510000	442220000	1549900000	741550000	808370000	1178900000	646460000	532400000	50178	1128	47236	302939;302940;302941;302942;302943;302944;302945;302946;302947;302948;302949;302950;302951;302952;302953;302954;302955;302956;302957;302958;302959;302960;302961;302962;302963;302964;302965;302966;302967;302968;302969;302970;302971;302972;302973	407230;407231;407232;407233;407234;407235;407236;407237;407238;407239;407240;407241;407242;407243;407244;407245;407246;407247;407248;407249;407250;407251;407252;407253;407254;407255;407256;407257;407258;407259;407260;407261;407262;407263;407264;407265;407266;407267;407268;407269;407270;407271;407272;407273;407274;407275;407276;407277;407278;407279;407280;407281;407282;407283;407284;407285;407286;407287;407288;407289;407290;407291	407231			59	
TGTGTLSVFGMQAR	0	Unmodified	1424.7082	0.70819844	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.78	6.55	1		3					2	3	3	4	2		68.198	62.45	2	3.7019E-30	34282	160513_QHF_FH_JSI10Kac_6	165.66	141.37			1.0583	1.0822	24.767	9	6	Median	1.4795	1.2567	23.878	3	2	Median	0.89519	1.0616	9.5956	4	2	Median	1.4862	1.418	47.437	2	2	Median	NaN	NaN	NaN	0	0	Median	262530000	123830000	138710000	68245000	28086000	40159000	152750000	77119000	75635000	41533000	18622000	22911000	0	0	0	50179	815	47237	302974;302975;302976;302977;302978;302979;302980;302981;302982	407292;407293;407294;407295;407296;407297;407298;407299;407300;407301;407302	407301			11	
TGTGTLSVFGMQAR	0	Oxidation (M)	1440.7031	0.70311306	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	14.8	0.433							1	3		1		2	1	60.377	49.548	2	0.0010148	26252	160513_QHF_FH_JSI9Kac_5	74.841	67.242			0.98851	1.1046	9.5676	4	0	Linear	1.3285	1.1132	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98851	0.9484	7.7435	2	0	Median	0.84698	0.92708	NaN	1	0	Median	18923000	9226200	9697000	10527000	4751600	5775200	0	0	0	5857700	3109500	2748200	2538700	1365100	1173600	50180	815	47237	302983;302984;302985;302986	407303;407304	407303		343	2	
TGTITHGTPVVNQVK	1	Unmodified	1550.8417	0.84165545	2218	Q04656	ATP7A	Copper-transporting ATPase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.263	27.244	3	0.00089252	23308	160511_QHF_FH_JSI11i_3	37.654	23.571			0.72365	0.71348	5.101	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71831	0.6882	NaN	1	0	Median	0.72904	0.73968	NaN	1	0	Median	71784000	43293000	28491000	0	0	0	0	0	0	30094000	16133000	13960000	41690000	27159000	14531000	50181	2218	47238	302987;302988	407305;407306	407305			2	
TGTITTFEHAHNMR	0	Oxidation (M)	1630.7522	0.75218852	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	4.33		2	26						4	12	9	6	5	24.763	22.975	2;3;4	7.9445E-16	22385	160511_QHF_FH_JSI11i_3	130.2	112.45			1.0277	1.1103	41.254	29	3	Median	1.8065	1.5182	38.688	11	2	Median	0.85005	0.99129	16.459	9	0	Median	1.2143	1.1486	12.252	4	1	Median	0.50934	0.51812	39.422	5	0	Median	2979300000	1411200000	1568100000	812320000	275290000	537030000	957460000	484450000	473000000	843290000	447780000	395510000	366260000	203670000	162600000	50182	1033	47239	302989;302990;302991;302992;302993;302994;302995;302996;302997;302998;302999;303000;303001;303002;303003;303004;303005;303006;303007;303008;303009;303010;303011;303012;303013;303014;303015;303016;303017;303018;303019;303020	407307;407308;407309;407310;407311;407312;407313;407314;407315;407316;407317;407318;407319;407320;407321;407322;407323;407324;407325;407326;407327;407328;407329;407330;407331;407332;407333;407334;407335;407336;407337;407338;407339	407313		640	32	
TGTITTFEHAHNMR	0	Unmodified	1614.7573	0.75727389	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.52		17	30						13	21	22	10	7	29.823	27.071	2;3;4	4.8084E-136	22271	160511_QHF_FH_JSI11i_3	293.8	280.4			0.97641	1.0374	41.335	54	10	Median	1.6763	1.3738	44.166	19	3	Median	0.84908	1.0106	32.378	20	6	Median	0.9584	0.9044	13.104	8	0	Median	0.58918	0.60189	14.305	7	1	Median	17059000000	8087900000	8970900000	4976100000	1969000000	3007100000	5595500000	2745400000	2850200000	4328400000	2172500000	2155900000	2158800000	1201000000	957710000	50183	1033	47239	303021;303022;303023;303024;303025;303026;303027;303028;303029;303030;303031;303032;303033;303034;303035;303036;303037;303038;303039;303040;303041;303042;303043;303044;303045;303046;303047;303048;303049;303050;303051;303052;303053;303054;303055;303056;303057;303058;303059;303060;303061;303062;303063;303064;303065;303066;303067;303068;303069;303070;303071;303072;303073;303074;303075;303076;303077;303078;303079;303080	407340;407341;407342;407343;407344;407345;407346;407347;407348;407349;407350;407351;407352;407353;407354;407355;407356;407357;407358;407359;407360;407361;407362;407363;407364;407365;407366;407367;407368;407369;407370;407371;407372;407373;407374;407375;407376;407377;407378;407379;407380;407381;407382;407383;407384;407385;407386;407387;407388;407389;407390;407391;407392;407393;407394;407395;407396;407397;407398;407399;407400;407401;407402;407403;407404;407405;407406;407407;407408;407409;407410;407411;407412;407413;407414;407415;407416;407417;407418;407419;407420;407421;407422;407423;407424;407425	407344			83	
TGTIVVEGHELHDEDIR	0	Unmodified	1918.9385	0.93846896	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							2	3	6	5	43.522	42.921	3;4	3.134E-24	36599	160511_QHF_FH_JSI12i_3	113.33	95.192			0.96449	1.0823	27.278	15	4	Median	1.9911	1.7288	11.832	2	1	Median	0.91138	1.2027	6.1886	3	0	Plateau	1.1055	1.1153	17.302	6	3	Median	0.78177	0.79441	8.0177	4	0	Median	1643700000	870640000	773060000	111740000	51825000	59911000	364370000	189950000	174410000	748840000	378390000	370460000	418750000	250470000	168280000	50184	1520	47240	303081;303082;303083;303084;303085;303086;303087;303088;303089;303090;303091;303092;303093;303094;303095;303096	407426;407427;407428;407429;407430;407431;407432;407433;407434;407435;407436;407437;407438;407439;407440;407441;407442;407443	407443			18	
TGTLQPWNSDSTLNSR	0	Unmodified	1775.8438	0.84384029	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	51.712	51.038	2	4.5987E-07	44044	160511_QHF_FH_JSI11i_2	89.283	71.847			1.1207	1.2071	24.517	4	1	Median	1.697	1.3836	NaN	1	1	Median	1.1695	1.3916	NaN	1	0	Median	1.0739	1.053	NaN	1	0	Median	0.78595	0.83525	NaN	1	0	Median	143480000	68963000	74516000	18306000	5622000	12684000	43572000	23259000	20312000	44092000	19525000	24567000	37510000	20557000	16952000	50185	4634	47241	303097;303098;303099;303100;303101;303102	407444;407445;407446;407447;407448;407449;407450;407451;407452	407452			9	
TGTLTMNR	0	Unmodified	892.44365	0.44365089	1168;1239	P23634;P20020	ATP2B4;ATP2B1	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	16.25	15.575	2	0.019076	12449	160511_QHF_FH_JSI11i_2	47.082	16.915			0.88511	0.9373	27.625	4	1	Median	1.3742	1.1722	NaN	1	0	Median	0.60859	0.74947	NaN	1	1	Median	1.1957	1.2018	NaN	1	0	Median	0.65522	0.72336	NaN	1	0	Median	426970000	231920000	195050000	80845000	35614000	45231000	86682000	55564000	31118000	132470000	64792000	67682000	126970000	75946000	51019000	50186	1239;1168	47242	303103;303104;303105;303106;303107	407453;407454;407455;407456	407454			4	
TGTLTQNR	0	Unmodified	889.46174	0.4617438	821;1032;1828;2467	P05023;P20648;P13637;P54707;Q13733	ATP1A1;ATP4A;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.66		4					2			1	2	2	1	7.5403	4.3337	2	0.00056048	4476	160511_QHF_FH_JSI12i_2	104.21	78.1			0.89838	0.98507	22.972	6	1	Median	1.7463	1.5022	NaN	1	0	Median	0.8074	0.98351	0.078188	2	1	Median	1.0288	1.0315	6.3593	2	0	Median	0.65747	0.73539	NaN	1	0	Median	1102800000	526880000	575960000	293440000	93456000	199990000	204000000	111020000	92980000	351370000	164350000	187030000	254020000	158050000	95969000	50187	821;1032;1828;2467	47243	303108;303109;303110;303111;303112;303113	407457;407458;407459;407460;407461;407462;407463;407464	407457			8	
TGTLTTNQMSVCR	0	Unmodified	1467.681	0.68099741	1103	P16615;Q93084	ATP2A2;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	2	2					1			1	1	2	1	35.427	31.758	2	1.7153E-17	28578	160511_QHF_FH_JSI10i_1	142.71	127.44			0.68926	0.71859	25.829	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74324	0.74839	36.376	2	1	Median	0.68926	0.71859	NaN	1	1	Median	150980000	88419000	62562000	0	0	0	0	0	0	31137000	21369000	9768300	119840000	67050000	52794000	50188	1103	47244	303114;303115;303116;303117;303118	407465;407466;407467;407468;407469	407466			5	
TGTLVEEAFWIDK	1	Unmodified	1507.7559	0.75586013	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	88.773	88.143	2	5.3661E-05	78230	160511_QHF_FH_JSI10i_2	110.08	93.406			1.1797	1.3903	11.319	3	1	Plateau	1.3694	1.1322	NaN	1	1	Median	1.1521	1.3986	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.232	1.35	NaN	1	0	Median	71036000	33786000	37250000	26239000	13706000	12533000	23159000	11937000	11222000	0	0	0	21639000	8143100	13495000	50189	5380	47245	303119;303120;303121	407470;407471;407472	407472			2	
TGTMLACYLVK	1	Unmodified	1255.6305	0.63046539	4473	Q9BVJ7	DUSP23	Dual specificity protein phosphatase 23	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	68.498	68.349	2	2.5842E-05	59331	160511_QHF_FH_JSI12i_3	100.02	77.488			1.1083	1.073	21.316	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0202	0.92286	NaN	1	0	Median	1.2039	1.2476	NaN	1	0	Median	73721000	39295000	34426000	0	0	0	0	0	0	34698000	17815000	16883000	39023000	21480000	17543000	50190	4473	47246	303122;303123	407473;407474	407474			2	
TGTQMPIYVTGITNHQNPFSFGNAVPGLTFHWSVTK	1	Unmodified	3946.9465	0.94647823	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	93.746	85.528	4;5	5.1391E-151	47797	160513_QHF_FH_JSI9Kac_6	246.05	233.27			1.4234	1.2222	32.73	7	0	Median	1.5458	1.3108	9.9061	2	0	Median	1.0949	1.2908	44.137	2	0	Median	1.3624	1.307	31.646	2	0	Median	0.65843	0.69549	NaN	1	0	Median	3152400000	1583700000	1568700000	679640000	279940000	399700000	1452200000	789770000	662470000	754230000	365000000	389230000	266310000	149000000	117310000	50191	3734	47247	303124;303125;303126;303127;303128;303129;303130	407475;407476;407477;407478;407479;407480;407481;407482;407483;407484;407485;407486	407478			10	
TGTQMPIYVTGITNHQNPFSFGNAVPGLTFHWSVTK	1	Oxidation (M)	3962.9414	0.94139285	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	91.353	83.028	4	9.0752E-32	48261	160513_QHF_FH_JSI10Kac_6	127.78	118.31			0.89717	0.95813	19.486	4	0	Median	1.2437	1.0555	NaN	1	0	Median	0.79877	0.94748	NaN	1	0	Median	1.0077	0.96891	NaN	1	0	Median	0.65109	0.67776	NaN	1	0	Median	619150000	303720000	315430000	159540000	63894000	95643000	218800000	108820000	109970000	119110000	55852000	63260000	121710000	75153000	46557000	50192	3734	47247	303131;303132;303133;303134	407487;407488;407489;407490	407490		2286	4	
TGTQYLLR	0	Unmodified	950.51853	0.5185304	1425	P35237	SERPINB6	Serpin B6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	4	5	4	37.356	31.869	2	2.3633E-05	28049	160511_QHF_FH_JSI10i_2	138.9	45.633			1.0563	1.0519	23.3	17	2	Median	1.4452	1.2349	29.647	4	1	Median	0.83837	0.99222	12.5	4	1	Median	1.0707	1.0568	13.254	5	0	Median	0.69388	0.75552	27.822	4	0	Median	4484800000	2307200000	2177600000	884190000	405330000	478870000	1180500000	633070000	547480000	1289600000	628040000	661590000	1130500000	640800000	489680000	50193	1425	47248	303135;303136;303137;303138;303139;303140;303141;303142;303143;303144;303145;303146;303147;303148;303149;303150;303151	407491;407492;407493;407494;407495;407496;407497;407498;407499;407500;407501;407502;407503;407504;407505;407506;407507;407508;407509;407510;407511;407512	407506			22	
TGTRPEDSK	1	Unmodified	989.47779	0.47778779	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	4.5574	4.1001	2	0.0063842	1967	160511_QHF_FH_JSI12i_2	71.379	22.021			1.157	1.386	52.333	3	0	Median	2.018	1.7097	NaN	1	0	Median	1.157	1.386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57473	0.6334	NaN	1	0	Median	161920000	89139000	72780000	52395000	21193000	31202000	50596000	32530000	18065000	0	0	0	58929000	35416000	23513000	50194	4477	47249	303152;303153;303154	407513	407513			1	
TGTSCALDCGAGIGR	0	Unmodified	1494.6555	0.65551094	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	33.038	32.63	2	0.00014422	29426	160511_QHF_FH_JSI12i_1	95.401	79.147			0.76899	0.75994	2.6748	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77848	0.7457	NaN	1	0	Median	0.75962	0.77445	NaN	1	0	Median	56299000	35914000	20385000	0	0	0	0	0	0	37656000	25039000	12617000	18643000	10875000	7767400	50195	4463	47250	303155;303156	407514;407515;407516	407516			3	
TGTTIAGVVYK	1	Unmodified	1108.6128	0.61282471	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14	0							2				1	1		53.045	42.373	2	0.010203	24709	160513_QHF_FH_JSI11Kac_4	53.751	45.526			1.1738	1.2605	3.5341	2	0	Median	NaN	NaN	NaN	0	0	Median	1.039	1.2294	NaN	1	0	Median	1.3261	1.2924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9493300	3780600	5712700	0	0	0	3669700	1482000	2187800	5823600	2298600	3524900	0	0	0	50196	4267	47251	303157;303158	407517;407518;407519	407519			3	
TGTTVPESIHSFIGDGLVKPEALNK	2	Unmodified	2609.3701	0.37008183	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		81.263	81.263	4	0.0023166	72525	160511_QHF_FH_JSI11i_3	35.016	29.113			1.1347	1.0723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1347	1.0723	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60370000	31169000	29201000	0	0	0	0	0	0	60370000	31169000	29201000	0	0	0	50197	1535	47252	303159	407520	407520			1	
TGTVSLEVR	0	Unmodified	960.52401	0.52400971	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.43	5	3	1			1	3	2	1	3	5	3	5	35.511	31.205	2	7.3083E-32	26368	160511_QHF_FH_JSI12i_2	208.37	126.59			1.0714	1.2044	27.71	15	5	Median	1.5944	1.3006	13.001	3	1	Plateau	1.0327	1.2525	11.486	5	0	Median	1.2239	1.1759	15.53	3	2	Plateau	0.79022	0.86943	12.477	4	2	Linear	3461100000	1749500000	1711600000	151480000	62900000	88578000	974670000	483680000	490990000	958120000	457440000	500680000	1376800000	745490000	631360000	50198	1650	47253	303160;303161;303162;303163;303164;303165;303166;303167;303168;303169;303170;303171;303172;303173;303174;303175	407521;407522;407523;407524;407525;407526;407527;407528;407529;407530;407531;407532;407533;407534;407535;407536;407537;407538;407539;407540;407541	407524			21	
TGVAPDVFAENMK	1	Unmodified	1377.6599	0.65985126	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	61.921	61.28	2	8.3433E-05	55372	160511_QHF_FH_JSI10i_1	98.156	75.515			1.129	1.2111	32.238	4	0	Median	1.8955	1.5465	NaN	1	0	Median	1.1876	1.4064	NaN	1	0	Median	1.0732	1.043	NaN	1	0	Median	0.7102	0.75772	NaN	1	0	Median	450440000	210050000	240400000	102170000	30951000	71219000	112320000	58420000	53895000	144390000	76223000	68167000	91567000	44451000	47116000	50199	2170	47254	303176;303177;303178;303179	407542;407543;407544;407545	407543			4	
TGVAVNK	1	Unmodified	687.39154	0.39153897	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.33	0.471	4	2								2	1	2	1	10.016	9.6443	2	0.0086884	7149	160511_QHF_FH_JSI10i_1	82.386	56.767			0.78648	0.78631	30.991	6	0	Median	1.2675	1.0332	15.735	2	0	Median	0.48347	0.56472	NaN	1	0	Median	0.78648	0.78631	16.706	2	0	Median	0.48373	0.51701	NaN	1	0	Median	4810000000	2353000000	2457000000	1340800000	567840000	772920000	346560000	231920000	114640000	2766500000	1322100000	1444400000	356130000	231110000	125020000	50200	1192	47255	303180;303181;303182;303183;303184;303185	407546	407546			1	
TGVAVNKPAEFTVDAK	2	Unmodified	1645.8675	0.86753585	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.28	4.86	7	8	9				1	4		5	8	8	8	48.163	45.692	2;3	1.6588E-15	39097	160511_QHF_FH_JSI12i_2	142.39	111.85			0.80901	0.88499	20.965	28	4	Median	1.2281	1.0443	10.142	5	0	Median	0.76676	0.91827	11.419	7	0	Median	0.89207	0.86449	23.649	8	2	Median	0.72837	0.75146	18.437	8	2	Median	13213000000	6969100000	6244000000	827100000	372360000	454740000	1643200000	877090000	766130000	4787100000	2189700000	2597400000	5955700000	3530000000	2425700000	50201	1192	47256	303186;303187;303188;303189;303190;303191;303192;303193;303194;303195;303196;303197;303198;303199;303200;303201;303202;303203;303204;303205;303206;303207;303208;303209;303210;303211;303212;303213;303214	407547;407548;407549;407550;407551;407552;407553;407554;407555;407556;407557;407558;407559;407560;407561;407562;407563;407564;407565;407566;407567;407568;407569;407570;407571;407572;407573;407574;407575;407576;407577;407578;407579;407580;407581;407582;407583;407584;407585;407586;407587	407555			41	
TGVAVNKPAEFTVDAKHGGK	3	Acetyl (K)	2067.0749	0.074902863	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	1	2	2	1	53.19	43.589	3;4	0.0022375	23619	160513_QHF_FH_JSI11Kac_6	72.086	52.533			0.73679	0.86332	27.702	5	0	Median	1.0954	0.94027	NaN	1	0	Median	0.88907	1.0664	29.881	2	0	Median	0.64116	0.62066	NaN	1	0	Median	0.73679	0.77024	NaN	1	0	Median	123610000	52239000	71369000	20477000	7654500	12822000	54753000	28348000	26405000	27847000	5653300	22193000	20532000	10584000	9948200	50202	1192	47257	303215;303216;303217;303218;303219;303220	407588;407589;407590;407591	407589	1056		4	
TGVCICFYQHK	1	Unmodified	1411.6377	0.63767603	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	57.331	48.136	2	1.9313E-11	26469	160513_QHF_FH_JSI10Kac_6	142.92	119.55			0.88327	0.99982	26.378	2	1	Median	NaN	NaN	NaN	0	0	Median	1.011	1.2048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77168	0.82969	NaN	1	1	Median	23393000	11894000	11499000	0	0	0	17395000	8566900	8827600	0	0	0	5998100	3327000	2671100	50203	4940	47258	303221;303222;303223;303224	407592;407593;407594;407595;407596	407595			5	
TGVELGK	1	Unmodified	702.3912	0.39120462	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.8	0.687					2	3	1				2	2	2	6.6893	-0.61969	2	0.017222	2478	160513_QHF_FH_JSI11Kac_3	73.039	20.356			0.87823	0.97226	9.2729	6	0	Median	NaN	NaN	NaN	0	0	Median	0.79054	0.92764	6.4233	2	0	Median	1.0289	0.98939	2.2497	2	0	Median	0.82589	0.88533	16.096	2	0	Median	683860000	367500000	316350000	0	0	0	197750000	109920000	87827000	180560000	86658000	93901000	305550000	170920000	134630000	50204	1192	47259	303225;303226;303227;303228;303229;303230	407597;407598;407599;407600;407601;407602;407603;407604	407597			8	
TGVELGKPTHFTVNAK	2	Unmodified	1697.9101	0.91006937	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.11		4	14						8	7	7	6	6	44.446	41.031	2;3;4	3.6373E-22	35685	160511_QHF_FH_JSI11i_3	171.91	154.17			0.79618	0.85483	23.025	26	7	Median	1.3986	1.1235	22.316	7	3	Median	0.74602	0.88155	9.0742	7	0	Median	0.89184	0.85922	16.542	6	2	Median	0.66354	0.68901	14.134	6	2	Median	22044000000	11143000000	10901000000	3109400000	1381300000	1728100000	4506000000	2385700000	2120300000	7697500000	3205000000	4492500000	6731400000	4171300000	2560100000	50205	1192	47260	303231;303232;303233;303234;303235;303236;303237;303238;303239;303240;303241;303242;303243;303244;303245;303246;303247;303248;303249;303250;303251;303252;303253;303254;303255;303256	407605;407606;407607;407608;407609;407610;407611;407612;407613;407614;407615;407616;407617;407618;407619;407620;407621;407622;407623;407624;407625;407626;407627;407628;407629;407630;407631;407632;407633;407634;407635;407636;407637;407638;407639;407640;407641;407642;407643;407644;407645;407646;407647	407607			42	
TGVELGKPTHFTVNAK	2	Acetyl (K)	1739.9206	0.92063405	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By matching	By MS/MS		15.6	0.49								2	3		1	4		66.296	56.712	2;3	1.1376E-07	30773	160513_QHF_FH_JSI11Kac_5	114.63	96.71			0.25893	0.24931	81.955	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.99027	1.1986	NaN	1	0	Median	0.30918	0.30118	26.728	2	0	Median	NaN	NaN	NaN	0	0	Median	126420000	96620000	29800000	0	0	0	21482000	11189000	10292000	104940000	85431000	19508000	0	0	0	50206	1192	47260	303257;303258;303259;303260;303261	407648;407649;407650;407651	407650	1057		4	
TGVENVMAKEICQK	2	Oxidation (M)	1621.7804	0.7803771	311	O43187	IRAK2	Interleukin-1 receptor-associated kinase-like 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.833							2	2	3	2	1	2	2	63.097	52.842	2	0.017885	29302	160513_QHF_FH_JSI12Kac_4	70.028	21.588			1.0189	0.98918	20.39	7	0	Median	1.0607	0.90483	3.332	2	0	Median	0.90782	1.0871	NaN	1	0	Median	0.81852	0.81547	27.309	2	0	Median	1.1029	1.1726	13.762	2	0	Median	235350000	118790000	116560000	30464000	15034000	15430000	23805000	13188000	10617000	104040000	52895000	51148000	77042000	37675000	39367000	50207	311	47261	303262;303263;303264;303265;303266;303267;303268	407652;407653;407654;407655	407654		125	2	
TGVHHYSGNNIELGTACGK	1	Unmodified	2013.9327	0.93267208	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	2.85		5	15						1	5	8	4	4	28.433	27.174	2;3;4	2.9411E-09	22778	160511_QHF_FH_JSI9i_3	112.82	107.61			0.96145	1.0663	41.45	14	3	Median	1.8231	1.4818	35.462	2	1	Median	1.0774	1.2514	26.099	6	1	Median	0.64227	0.59439	7.6396	3	1	Median	0.98059	0.98893	36.835	3	0	Plateau	1459800000	717880000	741930000	100360000	36291000	64069000	472260000	196570000	275690000	691640000	376500000	315150000	195560000	108520000	87034000	50208	2033	47262	303269;303270;303271;303272;303273;303274;303275;303276;303277;303278;303279;303280;303281;303282;303283;303284;303285;303286;303287;303288;303289	407656;407657;407658;407659;407660;407661;407662;407663;407664;407665;407666;407667;407668;407669;407670;407671;407672;407673;407674;407675;407676;407677;407678;407679;407680;407681;407682;407683;407684;407685;407686	407670			29	
TGVIEHEHPVNK	1	Unmodified	1358.6943	0.69426293	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	10.208	10.265	2;3;4	2.7676E-11	7523	160511_QHF_FH_JSI12i_3	116.71	106.91			1.0194	1.0717	33.586	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3584	1.2739	10.398	2	0	Median	0.66052	0.67518	27.543	3	0	Median	743580000	375520000	368060000	0	0	0	0	0	0	179270000	82444000	96830000	564310000	293080000	271230000	50209	2137	47263	303290;303291;303292;303293;303294	407687;407688;407689;407690;407691;407692	407691			5	
TGVIGVQPEEVTAAAK	1	Unmodified	1568.841	0.84098675	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	56.861	56.206	2	1.2404E-07	50684	160511_QHF_FH_JSI10i_1	138.94	103.52			1.0188	1.0801	44.564	4	3	Median	2.1498	1.6988	NaN	1	1	Median	0.95648	1.0983	NaN	1	1	Median	1.0851	1.0621	NaN	1	0	Median	0.57179	0.57471	NaN	1	1	Median	127060000	62871000	64192000	25704000	10316000	15387000	29493000	14758000	14735000	43877000	18026000	25850000	27989000	19770000	8218900	50210	4140	47264	303295;303296;303297;303298;303299	407693;407694;407695;407696;407697;407698;407699	407697			7	
TGVIHEK	1	Unmodified	782.42865	0.42865276	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	5.853	5.9486	2	0.040604	3538	160511_QHF_FH_JSI12i_3	47.082	16.897			0.79272	0.806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79272	0.806	NaN	1	0	Median	178340000	104910000	73428000	0	0	0	0	0	0	0	0	0	178340000	104910000	73428000	50211	4171	47265	303300	407700;407701	407701			2	
TGVLTVASYR	0	Unmodified	1065.5819	0.58185893	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		11.3	6.6		1							2	1	1	1		53.259	44.095	2	0.0020621	23868	160513_QHF_FH_JSI11Kac_6	76.282	56.292			1.0366	1.124	52.414	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65128	0.77593	NaN	1	0	Median	1.6499	1.6283	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59001000	29942000	29059000	0	0	0	25453000	14821000	10632000	33548000	15121000	18427000	0	0	0	50212	294	47266	303301;303302;303303	407702;407703;407704	407702			3	
TGVNGDSR	0	Unmodified	804.37259	0.37259444	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	4.7582	1.4618	2	0.0018537	2408	160511_QHF_FH_JSI10i_1	84.498	43.196			0.91809	0.94533	19.532	7	0	Median	1.5098	1.2479	NaN	1	0	Median	0.86385	1.0109	9.4874	2	0	Median	1.0234	0.9989	10.667	2	0	Median	0.69281	0.74266	0.98145	2	0	Median	1021100000	566520000	454560000	89109000	38512000	50598000	372840000	213350000	159500000	288390000	149070000	139310000	270740000	165590000	105150000	50213	1090	47267	303304;303305;303306;303307;303308;303309;303310	407705;407706;407707;407708;407709;407710;407711	407710			7	
TGVPDGIMQFIK	1	Unmodified	1304.6799	0.67985842	1159	P19447	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	90.608	89.99	2	0.028239	79897	160511_QHF_FH_JSI10i_2	43.77	31.904			0.71937	0.78734	20.184	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.5086	0.64675	NaN	1	0	Median	0.78643	0.80446	NaN	1	0	Median	0.47093	0.53751	NaN	1	1	Median	42906000	22949000	19957000	0	0	0	12014000	7111900	4902400	20809000	10460000	10348000	10083000	5376600	4706000	50214	1159	47268	303311;303312;303313	407712;407713	407713			2	
TGVQFTTKVR	1	Acetyl (K)	1177.6455	0.64552182	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		54.248	43.454	2	0.022722	23995	160513_QHF_FH_JSI11Kac_5	48.998	21.883			0.44434	0.43499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44434	0.43499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4242800	2903300	1339500	0	0	0	0	0	0	4242800	2903300	1339500	0	0	0	50215	1500	47269	303314	407714	407714	1518		1	
TGVSKPIVK	2	Unmodified	927.57532	0.57531699	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	14.188	13.802	3	0.042219	10507	160511_QHF_FH_JSI12i_3	27.481	10.81			0.44739	0.47784	44.27	2	1	Median	NaN	NaN	NaN	0	0	Median	0.30199	0.34941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66279	0.65348	NaN	1	0	Median	281420000	185550000	95869000	0	0	0	61516000	41491000	20025000	0	0	0	219900000	144060000	75844000	50216	4929	47270	303315;303316	407715;407716	407716			2	
TGVSPGDVSDSATSDSTK	1	Unmodified	1709.7592	0.75916719	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	28.812	28.25	2	4.0767E-16	24656	160511_QHF_FH_JSI9i_1	117.92	96.358			0.56091	0.59943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56091	0.59943	NaN	1	1	Median	22579000	10912000	11667000	0	0	0	0	0	0	0	0	0	22579000	10912000	11667000	50217	2948	47271	303317;303318;303319	407717;407718;407719	407719			3	
TGVTEWLEPLEAK	1	Unmodified	1471.7559	0.75586013	4794	Q9H900	ZWILCH	Protein zwilch homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	87.349	86.79	2	8.103E-05	77115	160511_QHF_FH_JSI10i_2	113.63	98.657			0.72173	0.85294	32.393	4	3	Median	NaN	NaN	NaN	0	0	Median	0.7168	0.85284	29.249	2	2	Median	1.3962	1.3356	NaN	1	0	Median	0.61962	0.69366	NaN	1	1	Median	59884000	33115000	26769000	0	0	0	33282000	19865000	13417000	15030000	6022200	9008000	11572000	7227800	4344000	50218	4794	47272	303320;303321;303322;303323;303324	407720;407721;407722;407723;407724	407724			5	
TGVTGPYVLGTGLILYALSK	1	Unmodified	2022.1401	0.14012888	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.49			8						9	4	4	5	4	100.68	96.124	2;3	0	51209	160513_QHF_FH_JSI11Kac_6	384.67	338.79			1.029	0.96509	22.758	17	2	Median	1.2056	1.0034	11.638	4	0	Median	0.83407	0.96572	4.2865	4	0	Median	1.108	1.0435	5.6301	5	2	Median	0.65161	0.66611	16.24	4	0	Median	14777000000	7313500000	7463500000	2650200000	1191600000	1458600000	2634100000	1401600000	1232500000	6830400000	3103200000	3727200000	2662300000	1617100000	1045300000	50219	1246	47273	303325;303326;303327;303328;303329;303330;303331;303332;303333;303334;303335;303336;303337;303338;303339;303340;303341	407725;407726;407727;407728;407729;407730;407731;407732;407733;407734;407735;407736;407737;407738;407739;407740;407741;407742;407743;407744;407745;407746;407747;407748;407749;407750;407751;407752;407753;407754;407755;407756;407757	407734			33	
TGVVPQLVK	1	Unmodified	939.57532	0.57531699	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.03	4	4					3	1		2	3	4	3	52.16	48.004	2	0.00045216	41050	160511_QHF_FH_JSI12i_2	80.438	69.565			0.88399	0.93462	16.171	12	0	Median	1.1862	0.98664	6.9509	2	0	Median	0.74081	0.91984	1.9511	3	0	Plateau	1.1795	1.0674	7.2236	4	0	Linear	0.70919	0.76604	4.8405	3	0	Plateau	1955600000	981800000	973770000	357170000	150610000	206550000	499790000	291930000	207860000	642080000	298120000	343960000	456530000	241140000	215400000	50220	1766	47274	303342;303343;303344;303345;303346;303347;303348;303349;303350;303351;303352;303353	407758;407759;407760;407761;407762;407763;407764;407765;407766;407767;407768;407769;407770;407771;407772;407773;407774	407760			16	
TGVVTDGVK	1	Unmodified	874.476	0.47599688	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	20.377	16.935	2	3.6579E-05	14080	160511_QHF_FH_JSI9i_1	99.442	88.073			1.0093	1.0076	21.833	7	0	Median	1.2297	1.0076	NaN	1	0	Median	0.88093	1.0422	19.402	2	0	Median	1.1427	1.1222	12.586	2	0	Median	0.66293	0.7187	2.746	2	0	Median	3058100000	1613900000	1444200000	703540000	337030000	366520000	829370000	482090000	347280000	745750000	297100000	448650000	779450000	497680000	281760000	50221	1473	47275	303354;303355;303356;303357;303358;303359;303360	407775;407776;407777;407778;407779;407780;407781;407782;407783;407784;407785;407786;407787	407782			13	
TGWFPANYAEK	1	Unmodified	1282.5982	0.59823728	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	60.783	60.087	2	0.0084383	51817	160511_QHF_FH_JSI12i_3	59.542	48.391		+	0.48709	0.48672	18.856	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48233	0.48044	NaN	1	1	Median	0.6196	0.66596	0.50183	2	2	Median	75981000	46434000	29547000	0	0	0	0	0	0	31808000	19841000	11967000	44173000	26593000	17580000	50222	2711	47276	303361;303362;303363	407788;407789;407790	407790			3	
TGWFPSNYVR	0	Unmodified	1225.588	0.58800695	2503	Q14155;Q15052	ARHGEF7;ARHGEF6	Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		65.079	63.899	2	0.011799	53390	160511_QHF_FH_JSI10i_3	47.603	22.68			0.8926	1.0506	52.059	3	2	Median	2.1397	1.7393	NaN	1	1	Median	0.8926	1.0506	NaN	1	0	Median	0.64869	0.61414	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68625000	29984000	38641000	26821000	8403200	18418000	26034000	11400000	14633000	15771000	10181000	5589900	0	0	0	50223	2503	47277	303364;303365;303366	407791;407792;407793;407794	407791			4	
TGWISTSSIWK	1	Unmodified	1264.6452	0.64518747	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	76.367	71.318	2	3.1835E-11	38770	160513_QHF_FH_JSI10Kac_6	140.16	121.94			0.97656	1.0821	24.43	7	0	Median	1.5485	1.3143	NaN	1	0	Median	0.94464	1.1073	4.8934	2	0	Median	1.1643	1.1189	4.7384	2	0	Median	0.67975	0.71787	11.492	2	0	Median	1698100000	880150000	817950000	97628000	37295000	60333000	451490000	239720000	211770000	542350000	250020000	292330000	606630000	353120000	253510000	50224	4983	47278	303367;303368;303369;303370;303371;303372;303373	407795;407796;407797;407798;407799;407800;407801;407802;407803;407804;407805;407806;407807;407808;407809	407809			14	
TGYESGEYEMLGEGLGVK	1	Unmodified	1917.8666	0.86660915	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	73.767	73.322	2	1.2748E-16	66679	160511_QHF_FH_JSI11i_1	196.33	173.8			1.1328	1.1266	2.6421	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1867	1.1479	NaN	1	1	Median	1.0814	1.1058	NaN	1	1	Median	71940000	33235000	38705000	0	0	0	0	0	0	40572000	18408000	22163000	31369000	14827000	16542000	50225	2441	47279	303374;303375	407810;407811	407810			2	
TGYFSSTDLGR	0	Unmodified	1202.5568	0.5567664	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	44.401	43.429	2	0.0071834	37349	160511_QHF_FH_JSI11i_2	51.268	41.036			1.1804	1.3322	37.712	4	2	Median	2.0841	1.8291	NaN	1	1	Median	1.0488	1.276	NaN	1	1	Median	1.3285	1.3909	NaN	1	0	Median	0.69143	0.74348	NaN	1	0	Median	95998000	46598000	49400000	15359000	4112400	11246000	18655000	11533000	7122000	37487000	17235000	20252000	24497000	13718000	10779000	50226	3516	47280	303376;303377;303378;303379	407812;407813;407814	407813			3	
TGYGGGFNER	0	Unmodified	1056.4625	0.46247208	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	20.413	19.941	2	0.0021567	16423	160511_QHF_FH_JSI12i_2	61.56	55.457			0.82999	0.84369	27.953	5	0	Median	1.4153	1.1992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96269	0.94313	15.758	2	0	Median	0.59425	0.64784	1.2482	2	0	Median	313520000	164970000	148550000	71187000	28512000	42675000	0	0	0	157800000	80511000	77289000	84538000	55951000	28586000	50227	657	47281	303380;303381;303382;303383;303384	407815;407816;407817;407818	407816			4	
TGYLGFVR	0	Unmodified	911.4865	0.48650199	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		51.771	51.771	2	0.043054	45795	160511_QHF_FH_JSI11i_3	38.806	18.524			0.91346	0.86033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91346	0.86033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59555000	28023000	31532000	0	0	0	0	0	0	59555000	28023000	31532000	0	0	0	50228	5202	47282	303385	407819	407819			1	
TGYQAKQVR	1	Acetyl (K)	1091.5724	0.57235688	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			24.728	15.094	2	0.04971	10152	160513_QHF_FH_JSI10Kac_4	43.808	31.281			0.8095	0.95189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8095	0.95189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5731500	3158600	2572900	0	0	0	5731500	3158600	2572900	0	0	0	0	0	0	50229	1650	47283	303386	407820	407820			1	
TGYSANIIFHTK	1	Unmodified	1350.6932	0.6932003	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.56		1	5						5	2	4	2	3	53.26	49.076	2;3	3.5943E-09	26147	160513_QHF_FH_JSI9Kac_6	116.06	107.55			0.85845	0.93078	23.543	10	0	Median	1.5348	1.297	14.073	2	0	Median	0.92508	0.9834	14.233	3	0	Plateau	1.138	1.0736	11.649	2	0	Median	0.73355	0.7544	6.0553	3	0	Median	1271000000	642650000	628370000	206710000	80534000	126180000	274130000	154070000	120060000	343090000	138360000	204740000	447070000	269680000	177390000	50230	4248	47284	303387;303388;303389;303390;303391;303392;303393;303394;303395;303396;303397	407821;407822;407823;407824;407825;407826;407827;407828;407829;407830;407831;407832;407833;407834;407835;407836;407837;407838;407839;407840	407831			20	
TGYSASITFHTK	1	Unmodified	1311.6459	0.64591575	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	2	2	42.936	36.391	2;3	1.0706E-12	19346	160513_QHF_FH_JSI9Kac_6	103.2	84.072			0.95627	1.0066	30.372	7	3	Median	1.179	1.0066	NaN	1	0	Median	0.87758	1.0178	9.3234	2	1	Median	1.7039	1.6085	31.412	2	1	Median	0.82738	0.87008	16.654	2	1	Median	301020000	139640000	161390000	26962000	11499000	15463000	53452000	30424000	23029000	93624000	39811000	53813000	126990000	57904000	69081000	50231	4512	47285	303398;303399;303400;303401;303402;303403;303404	407841;407842;407843;407844;407845;407846;407847;407848;407849	407844			9	
TGYSATVIFHTK	1	Unmodified	1323.6823	0.68230126	4513	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									7	2	2	2	1	55.382	46.11	2;3	2.0028E-09	24471	160513_QHF_FH_JSI9Kac_6	118.28	107.25			1.4366	1.3102	33.852	6	2	Median	1.5233	1.314	NaN	1	0	Median	1.1446	1.3665	41.267	2	1	Median	1.4979	1.4774	17.396	2	1	Median	0.70805	0.72402	NaN	1	0	Median	226500000	104220000	122280000	49078000	17476000	31602000	106450000	50962000	55488000	50981000	25803000	25177000	19995000	9979400	10016000	50232	4513	47286	303405;303406;303407;303408;303409;303410;303411	407850;407851;407852;407853	407851			4	
TGYSFVNCK	1	Unmodified	1074.4804	0.48043033	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	33.696	32.366	2	0.012251	27366	160511_QHF_FH_JSI12i_2	47.869	37.638			0.87463	0.95355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87463	0.95355	NaN	1	0	Median	38271000	17798000	20473000	0	0	0	0	0	0	0	0	0	38271000	17798000	20473000	50233	1568	47287	303412	407854	407854			1	
TGYSFVNCKK	2	Unmodified	1202.5754	0.57539335	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		23.331	22.704	3	0.028696	19140	160511_QHF_FH_JSI11i_3	22.046	12.857			0.96488	1.0125	21.242	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0101	1.1766	NaN	1	0	Median	0.92172	0.87131	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55302000	34588000	20713000	0	0	0	28193000	17363000	10831000	27108000	17226000	9882300	0	0	0	50234	1568	47288	303413;303414	407855;407856	407855			1	
TGYTLDVTTGQR	0	Unmodified	1310.6466	0.64664404	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.39	5	2					3		1	1	5	2	3	47.779	43.533	2	1.7688E-05	36369	160511_QHF_FH_JSI10i_1	91.937	67.083			0.95524	1.1066	38.754	10	3	Median	2.1411	1.7674	NaN	1	1	Median	0.92232	1.1066	4.2102	4	1	Median	1.131	1.1007	5.9493	2	0	Median	0.70509	0.75548	75.733	3	1	Median	2686700000	1320200000	1366500000	477610000	179800000	297820000	883940000	439950000	444000000	749890000	362790000	387100000	575200000	337660000	237540000	50235	423;326	47289	303415;303416;303417;303418;303419;303420;303421;303422;303423;303424;303425	407857;407858;407859;407860;407861;407862;407863;407864;407865;407866;407867;407868;407869	407864			13	
TGYTLDVTTGQRK	1	Unmodified	1438.7416	0.74160705	423;326	O60506;O43390	SYNCRIP;HNRNPR	Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	5.84		7	5					4	1	3	3	6	5	35.435	31.565	2;3	1.8011E-05	27674	160511_QHF_FH_JSI10i_2	90.759	77.08			1.3197	1.3229	30.048	14	1	Median	1.6595	1.4385	15.237	3	0	Plateau	1.0747	1.2861	12.075	3	0	Median	1.7327	1.7672	19.525	5	1	Median	0.78397	0.79952	9.8395	3	0	Plateau	971890000	436660000	535230000	136820000	55496000	81324000	230350000	102250000	128100000	338210000	129070000	209130000	266510000	149850000	116670000	50236	423;326	47290	303426;303427;303428;303429;303430;303431;303432;303433;303434;303435;303436;303437;303438;303439;303440;303441;303442	407870;407871;407872;407873;407874;407875;407876;407877;407878;407879;407880;407881;407882;407883;407884;407885;407886;407887;407888;407889;407890;407891	407883			22	
TGYTPDEK	1	Acetyl (Protein N-term)	951.41854	0.41854158	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	0	1	0	0	By matching			By MS/MS	4.33	4.71	2			1						1			2	21.944	21.101	2	0.01298	18392	160511_QHF_FH_JSI12i_1	42.287	34.134			1.2618	1.158	2.1729	2	0	Median	1.3915	1.1403	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1443	1.1759	NaN	1	0	Median	140700000	62212000	78491000	70219000	28410000	41809000	0	0	0	0	0	0	70484000	33801000	36682000	50237	645	47291	303443;303444;303445	407892;407893	407892			2	
THAAYNLLFFASGGGK	1	Unmodified	1652.8311	0.83109076	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	1	4	2	4	78.863	73.043	2;3	1.5016E-21	66428	160511_QHF_FH_JSI12i_3	131.26	104.59			0.8046	0.94696	30.834	9	6	Median	1.6098	1.3513	NaN	1	0	Median	0.61679	0.72839	18.946	3	2	Median	0.64165	0.61751	30.195	2	2	Median	1.0284	1.0378	4.8924	3	2	Median	495230000	257930000	237290000	15133000	7607300	7526200	145530000	95154000	50373000	108930000	57860000	51065000	225640000	97313000	128330000	50238	3951	47292	303446;303447;303448;303449;303450;303451;303452;303453;303454;303455;303456	407894;407895;407896;407897;407898;407899;407900;407901;407902;407903;407904;407905	407900			12	
THAGLGTGKPSSFEDVHLLQNK	2	Acetyl (K)	2377.2026	0.20262257	3512	Q8N302	AGGF1	Angiogenic factor with G patch and FHA domains 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	70.303	61.56	3;4	1.7681E-37	32257	160513_QHF_FH_JSI12Kac_6	168.81	153.09			0.93458	0.91834	10.218	7	0	Median	0.99291	0.85655	9.8518	2	0	Median	0.83057	0.96562	NaN	1	0	Median	0.87633	0.83728	1.2682	2	0	Median	0.96074	1.022	3.3142	2	0	Median	519060000	278980000	240080000	82285000	35418000	46867000	242230000	137810000	104420000	95145000	54068000	41078000	99398000	51684000	47714000	50239	3512	47293	303457;303458;303459;303460;303461;303462;303463;303464;303465	407906;407907;407908;407909;407910;407911;407912;407913;407914;407915;407916;407917;407918	407911	2877		13	
THAVLVALK	1	Unmodified	950.5913	0.59130141	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.28		8	14					3	9	7	11	9	7	36.351	32.373	2;3	4.1825E-05	26780	160511_QHF_FH_JSI10i_3	76.827	54.741			0.97539	0.97645	42.03	32	7	Median	1.1167	0.9251	7.1496	7	0	Median	0.86506	1.0338	37.901	9	4	Median	0.97569	0.91655	65.081	9	1	Median	0.94814	0.99228	14.873	7	2	Median	16662000000	7156500000	9505800000	2455600000	942220000	1513300000	3465000000	1696600000	1768400000	4716600000	2001200000	2715500000	6025100000	2516500000	3508600000	50240	1264	47294	303466;303467;303468;303469;303470;303471;303472;303473;303474;303475;303476;303477;303478;303479;303480;303481;303482;303483;303484;303485;303486;303487;303488;303489;303490;303491;303492;303493;303494;303495;303496;303497;303498;303499	407919;407920;407921;407922;407923;407924;407925;407926;407927;407928;407929;407930;407931;407932;407933;407934;407935;407936;407937;407938;407939;407940;407941;407942;407943;407944;407945;407946;407947;407948;407949;407950;407951;407952;407953;407954;407955;407956;407957;407958;407959;407960;407961;407962;407963;407964;407965;407966;407967;407968;407969;407970;407971;407972;407973;407974;407975;407976;407977;407978	407931			59	
THEAEIVEGENHTYCIR	0	Unmodified	2056.9273	0.92725235	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.539	34.428	3	0.0016557	29054	160511_QHF_FH_JSI12i_3	44.998	40.381			1.5124	1.507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5124	1.507	NaN	1	0	Median	61217000	27161000	34056000	0	0	0	0	0	0	0	0	0	61217000	27161000	34056000	50241	1192	47295	303500	407979	407979			1	
THEAQIQEMR	0	Unmodified	1241.5823	0.58226964	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.12	6.08		13	4					3	4	4	6	9	5	14.059	12.106	2;3	5.7426E-14	10115	160511_QHF_FH_JSI12i_2	157.66	133.71			1.0927	1.1128	24.672	17	6	Median	1.0958	0.94501	0.52167	2	0	Median	1.0211	1.2341	27.844	4	1	Median	1.2266	1.1979	24.982	6	3	Median	1.076	1.2222	24.953	5	2	Median	3348400000	1704700000	1643700000	428670000	209500000	219160000	747840000	416480000	331360000	1137700000	550840000	586840000	1034200000	527880000	506310000	50242	1436	47296	303501;303502;303503;303504;303505;303506;303507;303508;303509;303510;303511;303512;303513;303514;303515;303516;303517;303518;303519;303520;303521;303522;303523;303524	407980;407981;407982;407983;407984;407985;407986;407987;407988;407989;407990;407991;407992;407993;407994;407995;407996;407997;407998;407999;408000;408001;408002;408003;408004;408005;408006;408007;408008	407984			27	
THEAQIQEMR	0	Oxidation (M)	1257.5772	0.57718426	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By matching	By matching	By MS/MS	By MS/MS	2.1	0.3		9	1							1	3	3	3	8.4356	8.0709	2;3	0.0014611	4790	160511_QHF_FH_JSI12i_2	54.198	45.616			0.93083	1.0125	15.073	10	0	Median	1.2639	1.1182	NaN	1	0	Median	0.90757	1.1367	7.6214	3	0	Plateau	0.94406	0.93249	15.259	3	0	Median	1.0304	1.1706	16.951	3	0	Median	577590000	302700000	274890000	32736000	13224000	19512000	201030000	105200000	95831000	206380000	110280000	96108000	137440000	74001000	63434000	50243	1436	47296	303525;303526;303527;303528;303529;303530;303531;303532;303533;303534	408009;408010;408011	408009		1110	3	
THEDIEAQIR	0	Unmodified	1210.5942	0.59421454	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	22.232	21.42	2;3	3.4234E-08	17610	160511_QHF_FH_JSI11i_2	125.71	108.2			0.97295	1.0361	5.9509	6	0	Median	1.2681	1.089	NaN	1	0	Median	0.82535	0.98522	NaN	1	0	Median	1.0843	1.0954	1.4942	2	0	Median	0.87158	0.98055	1.4287	2	0	Median	585520000	297500000	288020000	59398000	24668000	34730000	63829000	33493000	30336000	284540000	143240000	141300000	177750000	96099000	81646000	50244	542	47297	303535;303536;303537;303538;303539;303540	408012;408013;408014;408015;408016;408017;408018	408016			6	
THEEHHAAKTLGIGK	2	Acetyl (K);Acetyl (Protein N-term)	1711.8642	0.86418181	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	1	1	0	1			By MS/MS		16	0									1			1		35.869	26.462	3	0.017206	14753	160513_QHF_FH_JSI11Kac_6	38.376	31.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50245	897	47298	303541	408019	408019	641		1	
THEMEPAEAIETPLLPHQK	1	Unmodified	2170.0729	0.072853952	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	59.214	59.039	3	3.6524E-06	50870	160511_QHF_FH_JSI12i_3	92.264	83.976			0.93046	0.9282	13.481	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76648	0.72932	NaN	1	1	Median	0.91697	0.91156	5.642	2	2	Median	111880000	59212000	52666000	0	0	0	0	0	0	25986000	17423000	8563100	85892000	41789000	44103000	50246	2540	47299	303542;303543;303544	408020;408021;408022;408023;408024	408024			5	
THETLSHAGQK	1	Unmodified	1207.5945	0.59454889	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	5.0321	4.9295	2;3	3.002E-18	2633	160511_QHF_FH_JSI11i_3	163.94	123.16			0.64246	0.57017	20.071	6	2	Median	0.67098	0.57578	NaN	1	1	Median	0.39904	0.4838	NaN	1	1	Median	0.56745	0.5305	8.8133	2	0	Median	0.74774	0.75971	6.3727	2	0	Median	1583100000	894540000	688580000	110990000	66164000	44822000	198880000	145140000	53740000	475870000	280250000	195620000	797390000	402980000	394410000	50247	2779	47300	303545;303546;303547;303548;303549;303550;303551	408025;408026;408027;408028;408029;408030;408031;408032;408033	408026			9	
THFDYQFGYR	0	Unmodified	1332.5887	0.58873523	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	4.8	5.6		4							1	1	2	1	1	49.503	47.005	3	0.026357	25438	160513_QHF_FH_JSI10Kac_6	27.644	18.69			1.2327	1.3182	21.467	5	0	Median	1.8699	1.6398	NaN	1	0	Median	1.2377	1.4743	34.904	2	0	Median	1.1877	1.1817	NaN	1	0	Median	1.2327	1.3182	NaN	1	0	Median	95788000	39175000	56613000	17857000	5729200	12128000	34771000	15899000	18872000	30343000	11894000	18449000	12816000	5652700	7163400	50248	3132	47301	303552;303553;303554;303555;303556	408034;408035	408035			1	
THFFLNAGNLCNLNYGEGPK	1	Unmodified	2265.0637	0.063686249	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		77.65	76.719	3	1.4984E-06	63136	160511_QHF_FH_JSI9i_3	85.974	82.686			0.563	0.55885	32.919	3	0	Plateau	1.151	0.94869	NaN	1	0	Median	0.76998	0.88849	NaN	1	0	Median	0.563	0.52059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	223090000	127950000	95135000	41777000	18496000	23281000	67445000	36699000	30746000	113860000	72757000	41108000	0	0	0	50249	5645	47302	303557;303558;303559	408036;408037;408038;408039;408040	408039			5	
THFGGGK	1	Unmodified	702.34492	0.34492313	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	2	4	4.8888	2.1779	2	0.023369	2324	160511_QHF_FH_JSI9i_3	55.604	51.75			0.86242	0.91317	60.927	12	1	Median	1.1753	0.92301	11.025	3	0	Plateau	0.94063	1.1063	16.832	3	0	Plateau	0.70211	0.70648	2.4793	2	0	Median	1.1377	1.237	107.19	4	1	Median	9347400000	4115900000	5231400000	2274300000	948630000	1325700000	3402000000	1643600000	1758300000	653890000	329230000	324660000	3017200000	1194400000	1822700000	50250	2025	47303	303560;303561;303562;303563;303564;303565;303566;303567;303568;303569;303570;303571	408041;408042;408043;408044;408045;408046;408047;408048;408049;408050;408051	408043			11	
THFLLMK	1	Unmodified	888.48914	0.48914452	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			6						3	4	2	2	1	48.145	44.076	2;3	0.004193	37889	160511_QHF_FH_JSI11i_3	57.559	38.828			0.95402	0.93631	13.12	8	2	Median	0.92989	0.76911	5.6055	3	2	Plateau	0.81022	0.95033	6.5855	2	0	Median	1.0441	1.0006	4.9025	2	0	Median	1.017	1.0356	NaN	1	0	Median	303960000	156270000	147690000	94667000	50234000	44433000	84086000	44278000	39807000	65299000	34646000	30653000	59908000	27114000	32794000	50251	376	47304	303572;303573;303574;303575;303576;303577;303578;303579;303580	408052;408053;408054;408055;408056;408057;408058;408059;408060;408061;408062	408052			11	
THFLLMKK	2	Unmodified	1016.5841	0.58410754	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			4.6118	4.1348	3	0.017011	2157	160511_QHF_FH_JSI10i_3	32.841	4.1137			0.87837	1.0218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87837	1.0218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1262100000	661220000	600900000	0	0	0	1262100000	661220000	600900000	0	0	0	0	0	0	50252	376	47305	303581	408063	408063			1	
THFTHSQFIVVSLK	1	Unmodified	1642.8831	0.88312633	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									4	2	1		1	65.625	56.646	3	0.00041569	30171	160513_QHF_FH_JSI9Kac_6	65.467	60.919			0.78984	0.95765	72.62	3	0	Median	0.76325	0.65179	NaN	1	0	Median	0.78984	0.95765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.4621	2.6571	NaN	1	0	Median	68458000	33513000	34945000	19736000	12167000	7569000	27377000	14298000	13079000	0	0	0	21346000	7048300	14297000	50253	679	47306	303582;303583;303584;303585	408064;408065;408066;408067	408064			4	
THGSEIINDLQGR	0	Unmodified	1438.7165	0.71645494	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								2		1	38.408	37.71	2;3	0.0036386	33206	160511_QHF_FH_JSI10i_2	41.644	22.913			0.63823	0.64519	34.881	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.69746	0.86593	48.223	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8199	0.76251	NaN	1	1	Median	81283000	48439000	32844000	0	0	0	49592000	30431000	19161000	0	0	0	31691000	18008000	13683000	50254	475	47307	303586;303587;303588	408068;408069;408070	408069			3	
THIDTVINALK	1	Unmodified	1223.6874	0.68738664	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	57.387	56.724	2;3	7.9713E-08	48388	160511_QHF_FH_JSI12i_3	100.48	87.521			0.92782	0.97354	14.657	12	0	Median	1.1109	0.95035	16.44	2	0	Median	0.8775	1.0895	3.217	2	0	Median	0.9215	0.90697	9.2074	4	0	Median	0.91433	0.96574	21.623	4	0	Median	1343300000	686110000	657200000	128630000	66476000	62158000	199010000	117650000	81368000	489830000	237690000	252140000	525840000	264300000	261540000	50255	726	47308	303589;303590;303591;303592;303593;303594;303595;303596;303597;303598;303599;303600	408071;408072;408073;408074;408075;408076;408077;408078;408079;408080;408081;408082;408083;408084;408085;408086;408087;408088	408085			17	
THIEQIQK	1	Unmodified	995.53999	0.53999412	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.06	11.855	2	0.0091586	9246	160511_QHF_FH_JSI11i_2	65.246	48.47			1.8073	1.8209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8073	1.8209	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56981000	16257000	40724000	0	0	0	0	0	0	56981000	16257000	40724000	0	0	0	50256	4290	47309	303601	408089	408089			1	
THIETVINALK	1	Unmodified	1237.703	0.7030367	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	56.619	56.52	2;3	2.6767E-05	48564	160511_QHF_FH_JSI12i_3	99.53	71.706			1.2123	1.1474	27.566	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2192	1.1474	33.248	3	3	Median	0.99664	1.0214	28.697	2	1	Median	451200000	241430000	209770000	0	0	0	0	0	0	195760000	108530000	87230000	255440000	132900000	122540000	50257	635	47310	303602;303603;303604;303605;303606	408090;408091;408092;408093;408094;408095	408093			6	
THIISDK	1	Unmodified	812.43922	0.43921744	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		8.3667	8.3667	2	0.053281	6057	160511_QHF_FH_JSI11i_3	47.082	24.191			0.57408	0.54764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57408	0.54764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	294100000	213680000	80420000	0	0	0	0	0	0	294100000	213680000	80420000	0	0	0	50258	2456	47311	303607	408096	408096			1	
THILLFLPK	1	Unmodified	1080.6696	0.66955173	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.23	6.07		6	20	1	5			4	12	12	14	11	11	76.985	71.975	2;3	1.8476E-05	36888	160513_QHF_FH_JSI11Kac_6	99.802	95.446			0.94105	0.91898	28.348	40	3	Median	1.0684	0.8713	33.549	11	2	Median	0.8268	0.89611	33.023	11	0	Median	1.0142	0.96226	13.831	8	0	Median	0.86216	0.9064	20.48	10	1	Median	79771000000	31587000000	48184000000	19204000000	6912500000	12291000000	23069000000	9942500000	13127000000	21634000000	8380500000	13253000000	15864000000	6351100000	9513100000	50259	867	47312	303608;303609;303610;303611;303612;303613;303614;303615;303616;303617;303618;303619;303620;303621;303622;303623;303624;303625;303626;303627;303628;303629;303630;303631;303632;303633;303634;303635;303636;303637;303638;303639;303640;303641;303642;303643;303644;303645;303646;303647;303648;303649;303650;303651;303652;303653;303654;303655	408097;408098;408099;408100;408101;408102;408103;408104;408105;408106;408107;408108;408109;408110;408111;408112;408113;408114;408115;408116;408117;408118;408119;408120;408121;408122;408123;408124;408125;408126;408127;408128;408129;408130;408131;408132;408133;408134;408135;408136;408137;408138;408139;408140;408141;408142;408143;408144;408145;408146;408147;408148;408149;408150;408151;408152;408153;408154;408155;408156;408157;408158;408159;408160;408161;408162;408163;408164;408165;408166;408167;408168;408169;408170;408171;408172;408173;408174;408175;408176;408177;408178;408179;408180;408181;408182;408183;408184;408185;408186;408187;408188;408189;408190;408191;408192;408193;408194;408195;408196;408197;408198;408199;408200;408201;408202;408203;408204;408205;408206;408207;408208;408209;408210;408211;408212;408213;408214;408215;408216;408217;408218;408219;408220;408221;408222;408223;408224;408225;408226;408227;408228;408229;408230;408231;408232;408233;408234;408235;408236;408237;408238;408239;408240;408241;408242;408243;408244;408245;408246;408247;408248	408143			152	
THINIVVIGHVDSGK	1	Unmodified	1587.8733	0.87328993	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	6.13		4	44	3					94	41	23	17	64	75.495	69.396	2;3;4	7.4531E-24	27035	160513_QHF_FH_JSI10Kac_6	155.98	120.56			1.3085	1.4244	85.753	112	50	Median	0.53493	0.45336	27.332	33	13	Median	0.97022	1.116	27.163	20	2	Median	1.9202	1.8508	43.709	13	4	Median	2.6649	2.8147	52.844	46	31	Median	3944300000	1751400000	2192900000	844690000	546840000	297840000	1197500000	582970000	614540000	695290000	246730000	448550000	1206800000	374870000	831980000	50260	2072;2231	47313	303656;303657;303658;303659;303660;303661;303662;303663;303664;303665;303666;303667;303668;303669;303670;303671;303672;303673;303674;303675;303676;303677;303678;303679;303680;303681;303682;303683;303684;303685;303686;303687;303688;303689;303690;303691;303692;303693;303694;303695;303696;303697;303698;303699;303700;303701;303702;303703;303704;303705;303706;303707;303708;303709;303710;303711;303712;303713;303714;303715;303716;303717;303718;303719;303720;303721;303722;303723;303724;303725;303726;303727;303728;303729;303730;303731;303732;303733;303734;303735;303736;303737;303738;303739;303740;303741;303742;303743;303744;303745;303746;303747;303748;303749;303750;303751;303752;303753;303754;303755;303756;303757;303758;303759;303760;303761;303762;303763;303764;303765;303766;303767;303768;303769;303770;303771;303772;303773;303774;303775;303776;303777;303778;303779;303780;303781;303782;303783;303784;303785;303786;303787;303788;303789;303790;303791;303792;303793;303794;303795;303796;303797;303798;303799;303800	408249;408250;408251;408252;408253;408254;408255;408256;408257;408258;408259;408260;408261;408262;408263;408264;408265;408266;408267;408268;408269;408270;408271;408272;408273;408274;408275;408276;408277;408278;408279;408280;408281;408282;408283;408284;408285;408286;408287;408288;408289;408290;408291;408292;408293;408294;408295;408296;408297;408298;408299;408300;408301;408302;408303;408304;408305;408306;408307;408308;408309;408310;408311;408312;408313;408314;408315;408316;408317;408318;408319;408320;408321;408322;408323;408324;408325;408326;408327;408328;408329;408330;408331;408332;408333;408334;408335;408336;408337;408338;408339;408340;408341;408342;408343;408344;408345;408346;408347;408348;408349;408350;408351;408352;408353;408354;408355;408356;408357;408358;408359;408360;408361;408362;408363;408364;408365;408366;408367;408368;408369;408370;408371;408372;408373;408374;408375;408376;408377;408378;408379;408380;408381;408382;408383;408384;408385;408386;408387;408388;408389;408390;408391;408392;408393;408394;408395;408396;408397;408398;408399;408400;408401;408402;408403;408404;408405;408406;408407;408408;408409;408410;408411;408412;408413;408414;408415;408416;408417;408418;408419;408420	408416			157	
THINYGVK	1	Unmodified	930.49232	0.49231565	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	14.943	14.568	2	0.011039	11549	160511_QHF_FH_JSI11i_2	54.549	39.11			0.68192	0.5494	25.654	5	1	Median	0.68192	0.5494	NaN	1	0	Median	0.42329	0.52459	NaN	1	1	Median	0.69174	0.66455	36.56	2	0	Median	0.82278	0.82424	NaN	1	0	Median	386450000	226430000	160020000	18145000	10301000	7843600	41600000	28820000	12780000	202330000	114010000	88324000	124370000	73302000	51068000	50261	1507	47314	303801;303802;303803;303804;303805	408421;408422;408423	408421			3	
THIQDNHDGTYTVAYVPDVTGR	0	Unmodified	2458.1513	0.15131528	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.42		13	4						4	4	4	5	8	56.323	53.672	3;4	7.6241E-19	45550	160511_QHF_FH_JSI12i_3	151.94	147.29			1.1761	1.0933	26.861	19	3	Median	1.2559	1.051	7.5383	4	0	Linear	0.95549	1.1626	27.888	4	0	Median	1.0468	1.0225	32.321	4	0	Median	1.2382	1.3804	11.813	7	3	Median	1465500000	652590000	812870000	185090000	80689000	104400000	335070000	174620000	160450000	283380000	136270000	147110000	661920000	261010000	400910000	50262	1192	47315	303806;303807;303808;303809;303810;303811;303812;303813;303814;303815;303816;303817;303818;303819;303820;303821;303822;303823;303824;303825;303826	408424;408425;408426;408427;408428;408429;408430;408431;408432;408433;408434;408435;408436;408437;408438;408439;408440;408441;408442;408443;408444;408445;408446;408447;408448;408449;408450	408446			24	
THIVSIPLR	0	Unmodified	1034.6237	0.62366417	3537	Q8N556	AFAP1	Actin filament-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.853	44.004	3	0.012407	38394	160511_QHF_FH_JSI11i_3	49.444	32.606			0.88161	0.8589	12.705	4	0	Median	1.3411	1.0921	NaN	1	0	Median	0.76424	0.85873	NaN	1	0	Median	0.93937	0.85907	NaN	1	0	Median	0.82741	0.82927	NaN	1	0	Median	184510000	94028000	90486000	38065000	18321000	19745000	40385000	23187000	17198000	53170000	24888000	28282000	52893000	27632000	25262000	50263	3537	47316	303827;303828;303829;303830	408451;408452;408453;408454	408451			0	
THLASDDLYK	1	Unmodified	1161.5666	0.5666028	4762	Q9H7B2	RPF2	Ribosome production factor 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	26.73	25.88	3	0.00056716	22523	160511_QHF_FH_JSI10i_2	45.908	42.376			0.99106	1.0357	16.496	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75988	0.93801	NaN	1	0	Median	1.0463	1.0357	NaN	1	0	Median	0.68325	0.75051	NaN	1	1	Median	112440000	52767000	59673000	0	0	0	28827000	15164000	13663000	63928000	27951000	35977000	19685000	9651900	10033000	50264	4762	47317	303831;303832;303833	408455;408456;408457	408457			2	
THLMSESEWR	0	Unmodified	1274.5714	0.5713706	1932	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	3	4	2	31.879	31.493	2;3	1.2103E-06	26194	160511_QHF_FH_JSI12i_3	92.538	89.588			1.0965	1.1731	21	8	1	Median	1.7351	1.4924	NaN	1	0	Median	1.0419	1.2699	21.147	2	0	Median	1.3578	1.2998	26.092	3	1	Plateau	0.99535	1.0081	1.3897	2	0	Median	762630000	363930000	398690000	11000000	4177100	6822700	69061000	34862000	34199000	370700000	178320000	192380000	311860000	146570000	165290000	50265	1932	47318	303834;303835;303836;303837;303838;303839;303840;303841;303842;303843;303844	408458;408459;408460;408461;408462;408463;408464;408465;408466;408467;408468	408467			10	
THLPDFLICK	1	Unmodified	1242.6431	0.64307898	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.565	65.418	3	0.0019829	58166	160511_QHF_FH_JSI11i_3	53.683	50.641			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50266	610	47319	303845;303846	408469;408470	408469			2	
THLPGFVEQAEALK	1	Unmodified	1538.8093	0.80929269	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	5.48		8	4						3	3	3	4	5	66.828	64.596	2;3	3.4921E-21	57088	160511_QHF_FH_JSI9i_2	169.52	159.15			1.0194	1.0495	22.735	15	1	Median	1.2234	1.0281	10.032	3	0	Plateau	0.99266	1.1888	7.721	3	0	Median	0.97769	0.96483	11.252	4	0	Median	0.97918	1.0777	35.851	5	1	Median	10322000000	4857100000	5465000000	967380000	497610000	469770000	1842100000	969740000	872330000	3674800000	1776500000	1898300000	3837800000	1613200000	2224600000	50267	1335	47320	303847;303848;303849;303850;303851;303852;303853;303854;303855;303856;303857;303858;303859;303860;303861	408471;408472;408473;408474;408475;408476;408477;408478;408479;408480;408481;408482;408483;408484;408485;408486;408487;408488;408489;408490;408491;408492;408493;408494;408495;408496;408497;408498;408499;408500;408501;408502;408503;408504;408505;408506;408507;408508;408509;408510;408511;408512	408486			42	
THLPLALLPQTLLDQK	1	Unmodified	1800.0509	0.050919944	1699	P50225;P50226	SULT1A1;SULT1A2	Sulfotransferase 1A1;Sulfotransferase 1A2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	1	2	2	100.68	100.58	2;3	1.0684E-05	83297	160511_QHF_FH_JSI10i_3	106.52	102.28			0.9187	0.91782	12.82	6	6	Median	1.1357	0.95452	3.8968	2	2	Median	0.91828	1.0719	NaN	1	1	Median	0.81768	0.7928	10.65	2	2	Median	0.87391	0.90718	NaN	1	1	Median	442830000	247070000	195750000	53901000	26187000	27714000	63120000	35514000	27606000	121750000	70052000	51699000	204050000	115320000	88733000	50268	1699	47321	303862;303863;303864;303865;303866;303867;303868	408513;408514;408515;408516;408517;408518;408519;408520	408514			8	
THLSLSHNPEQK	1	Unmodified	1389.7001	0.70007659	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	4.65		3	9						2	2	4	4	4	17.275	15.739	2;3;4	1.7357E-16	11764	160511_QHF_FH_JSI12i_3	167.12	151.23			0.81019	0.85885	79.111	12	2	Median	0.30983	0.26676	176.23	2	1	Median	0.78015	0.89768	17.129	2	0	Median	0.9334	0.86683	65.688	4	1	Median	0.79471	0.84607	26.452	4	0	Median	2030500000	1286800000	743760000	414310000	389410000	24908000	84745000	43593000	41152000	679470000	330080000	349390000	851990000	523680000	328320000	50269	1004	47322	303869;303870;303871;303872;303873;303874;303875;303876;303877;303878;303879;303880;303881;303882	408521;408522;408523;408524;408525;408526;408527;408528;408529;408530;408531;408532;408533;408534;408535;408536;408537;408538	408535			17	
THLTEDTPK	1	Unmodified	1040.5138	0.51383895	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.16		7	1					2		2	1	3	4	11.456	9.2546	2;3	5.6434E-06	7729	160511_QHF_FH_JSI12i_2	114.99	90.833			0.90415	0.95613	27.107	10	0	Median	1.2905	1.1011	2.2137	2	0	Median	0.66454	0.79658	NaN	1	0	Median	0.88821	0.89423	27.103	3	0	Plateau	0.85565	0.95613	36.74	4	0	Median	1419200000	745990000	673200000	264660000	120920000	143740000	153110000	91719000	61393000	619480000	329340000	290140000	381950000	204010000	177940000	50270	2701	47323	303883;303884;303885;303886;303887;303888;303889;303890;303891;303892	408539;408540;408541;408542;408543;408544;408545;408546	408539			8	
THLTELQR	0	Unmodified	996.53524	0.53524309	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				23.633	16.214	3	0.040359	9246	160513_QHF_FH_JSI9Kac_6	40.067	23.527			1.2161	1.0705	NaN	1	0	Median	1.2161	1.0705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3791200	1693500	2097700	3791200	1693500	2097700	0	0	0	0	0	0	0	0	0	50271	2185	47324	303893	408547	408547			0	
THLTSLK	1	Unmodified	798.45995	0.45995289	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	12.57	12.179	2	0.012047	9667	160511_QHF_FH_JSI9i_3	69.998	39.33			0.92555	0.90658	28.478	4	0	Median	1.1702	0.96081	NaN	1	0	Median	0.73203	0.85541	NaN	1	0	Median	1.498	1.3747	NaN	1	0	Median	0.68831	0.69701	NaN	1	0	Median	1471300000	639220000	832070000	117380000	45954000	71421000	297750000	160440000	137310000	344690000	139890000	204790000	711480000	292940000	418540000	50272	2688	47325	303894;303895;303896;303897	408548;408549;408550;408551;408552	408550			5	
THLYGSLLYYLQIAQRPDEPDTLEAAK	1	Unmodified	3104.5819	0.58186552	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			88.067	82.349	3;4	1.0977E-48	46468	160513_QHF_FH_JSI10Kac_6	168.65	150.75			0.7786	0.92028	4.7039	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7786	0.92028	4.7039	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	327130000	192510000	134610000	0	0	0	327130000	192510000	134610000	0	0	0	0	0	0	50273	3862	47326	303898;303899	408553;408554;408555	408553			2	
THLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSR	0	Oxidation (M)	4452.2271	0.22712935	1299	P27824	CANX	Calnexin	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	97.589	88.147	3	3.4963E-27	48322	160513_QHF_FH_JSI12Kac_6	109.53	101.4			1.485	1.5434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.485	1.5434	NaN	1	0	Median	121050000	43691000	77363000	0	0	0	0	0	0	0	0	0	121050000	43691000	77363000	50274	1299	47327	303900	408556	408556		945	1	
THMADENK	1	Unmodified	944.40218	0.40218001	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	4.2497	3.8639	2	0.016562	1957	160511_QHF_FH_JSI12i_2	49.418	37.649			1.0229	0.98108	34.839	3	0	Plateau	0.91391	0.75588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57019	0.55443	NaN	1	0	Median	1.0271	1.1114	NaN	1	0	Median	67104000	43951000	23153000	25649000	17570000	8079200	0	0	0	8894200	5434400	3459800	32560000	20946000	11614000	50275	2934	47328	303901;303902;303903	408557;408558	408557			2	
THMLTNAILVQQIIK	1	Unmodified	1721.9862	0.9862112	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	80.977	80.259	3	0.012601	67404	160511_QHF_FH_JSI10i_3	56.527	52.285			0.92214	0.96634	26.85	4	0	Median	1.1933	0.97148	NaN	1	0	Median	0.82683	0.96396	NaN	1	0	Median	1.0284	0.96872	NaN	1	0	Median	0.55045	0.56585	NaN	1	0	Median	168210000	90781000	77429000	31280000	15474000	15807000	37841000	20745000	17096000	57894000	28496000	29398000	41195000	26067000	15128000	50276	5106	47329	303904;303905;303906;303907	408559	408559			0	
THMQDLK	1	Unmodified	871.42219	0.42218717	2725	Q16181	SEPT7	Septin-7	no	no	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	10.038	9.539	2;3	0.0050649	7466	160511_QHF_FH_JSI10i_2	58.981	22.586			3.9728	4.8539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.9728	4.8539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	690340000	97877000	592460000	0	0	0	690340000	97877000	592460000	0	0	0	0	0	0	50277	2725	47330	303908;303909	408560;408561	408560			2	
THMQNIK	1	Unmodified	870.43817	0.43817159	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	6.8938	6.6351	2;3	0.0075877	3962	160511_QHF_FH_JSI12i_3	86.872	20.785			0.98227	1.0087	30.189	10	1	Median	1.7866	1.5128	27.948	2	1	Median	0.90688	1.1075	11.203	2	0	Median	0.98883	0.96093	9.808	3	0	Plateau	1.1411	1.1566	36.425	3	0	Plateau	1758200000	937540000	820650000	159490000	64882000	94607000	241010000	145170000	95844000	283010000	135720000	147300000	1074700000	591770000	482900000	50278	5298	47331	303910;303911;303912;303913;303914;303915;303916;303917;303918;303919	408562;408563;408564;408565	408565			4	
THMVVANTMEDFQK	1	Unmodified	1649.7542	0.75416235	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5		9	2						2	3	2	4	4	49.796	47.543	2;3	3.6134E-22	41690	160511_QHF_FH_JSI11i_3	218.75	205.09			0.95818	0.99344	8.4753	11	0	Median	1.2749	1.0796	0.38141	2	0	Median	0.8512	1.036	5.9292	2	0	Median	0.96103	0.97227	3.4534	4	0	Median	0.87098	0.97997	15.968	3	0	Median	2571600000	1374600000	1197100000	499160000	278700000	220450000	671380000	392810000	278570000	786610000	366510000	420090000	614510000	336550000	277960000	50279	878	47332	303920;303921;303922;303923;303924;303925;303926;303927;303928;303929;303930;303931;303932	408566;408567;408568;408569;408570;408571;408572;408573;408574;408575;408576;408577;408578;408579;408580;408581;408582;408583;408584;408585;408586;408587;408588;408589;408590;408591;408592;408593;408594;408595;408596;408597;408598	408567			33	
THMVVANTMEDFQK	1	Oxidation (M)	1665.7491	0.74907697	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0				By MS/MS	2.5	0.5		1	1										2	38.439	37.081	3	0.0062513	27594	160511_QHF_FH_JSI12i_3	42.568	32.229			1.0764	1.1905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0764	1.1905	NaN	1	0	Median	20903000	12377000	8526100	0	0	0	0	0	0	0	0	0	20903000	12377000	8526100	50280	878	47332	303933;303934	408599;408600	408600		432;433	1	
THNGESVSYLFSHVPL	0	Unmodified	1785.8686	0.86859848	1920;1008	P60891;P21108;P11908	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.9		6							1	1	2	2	2	84.411	82.979	2;3	3.6436E-05	74024	160511_QHF_FH_JSI11i_2	80.738	76.496			1.0064	1.0751	37.549	7	3	Median	1.2887	1.118	NaN	1	0	Median	1.1208	1.3387	31.011	2	1	Median	0.73734	0.75084	45.148	2	1	Median	0.85854	0.96148	44.305	2	1	Median	716170000	368130000	348030000	78625000	35457000	43167000	186680000	90114000	96565000	296480000	160220000	136260000	154380000	82342000	72038000	50281	1920;1008	47333	303935;303936;303937;303938;303939;303940;303941	408601;408602;408603;408604;408605;408606;408607;408608;408609;408610	408606			10	
THNTLYAPEMLAK	1	Unmodified	1487.7442	0.74424959	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	48.481	47.489	2	1.0383E-05	40724	160511_QHF_FH_JSI11i_2	146.16	120.12			0.77092	0.67339	33.794	3	1	Median	0.77092	0.67339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2116	1.1977	NaN	1	0	Median	0.58049	0.66104	NaN	1	0	Median	162720000	83503000	79220000	33541000	18443000	15098000	0	0	0	64034000	26497000	37537000	65148000	38563000	26585000	50282	4831	47334	303942;303943;303944	408611;408612;408613;408614	408614			4	
THPQWYPAR	0	Unmodified	1154.5621	0.56212655	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.72	5.51		3	11						4	5	7	3	3	27.823	25.17	2;3	3.6726E-05	20198	160511_QHF_FH_JSI9i_3	99.375	92.48			1.0436	0.98977	21.444	13	4	Median	1.2203	1.0297	19.958	5	2	Median	0.90267	1.0535	15.939	4	1	Median	0.78469	0.74993	0.1125	2	1	Median	1.0801	1.152	26.586	2	0	Median	947240000	466180000	481060000	322580000	135670000	186910000	338480000	169060000	169420000	240960000	138380000	102590000	45208000	23069000	22139000	50283	5141	47335	303945;303946;303947;303948;303949;303950;303951;303952;303953;303954;303955;303956;303957;303958;303959;303960;303961;303962	408615;408616;408617;408618;408619;408620;408621;408622;408623;408624;408625;408626;408627;408628;408629;408630;408631	408622			17	
THPVEIFYTPEPERDYLEAAIR	0	Unmodified	2645.3126	0.31256695	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	3	2	86.027	85.883	3;4	5.8335E-08	74152	160511_QHF_FH_JSI12i_3	91.725	85.466			1.3257	1.3852	6.5982	6	3	Linear	NaN	NaN	NaN	0	0	Median	0.93174	1.1236	NaN	1	0	Median	1.4189	1.3215	4.3909	3	2	Plateau	1.2911	1.2976	5.4067	2	1	Median	351410000	156290000	195120000	0	0	0	25364000	17203000	8160400	183230000	86867000	96362000	142820000	52219000	90596000	50284	300	47336	303963;303964;303965;303966;303967;303968	408632;408633;408634;408635;408636;408637;408638;408639;408640	408638			9	
THPVLYLFYEDMK	1	Unmodified	1654.8065	0.8065155	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.68	6.36		2	10						7	3	4	5	7	86.16	82.453	2;3	7.7242E-25	39825	160513_QHF_FH_JSI12Kac_6	165.66	146.02			1.0405	1.0218	32.468	18	2	Median	1.4407	1.2207	49.705	3	0	Plateau	1.0423	1.2199	23.971	4	1	Median	1.0487	0.99128	17.473	5	0	Median	1.0033	1.0218	33.507	6	1	Median	1147900000	541580000	606300000	184990000	65146000	119840000	155960000	65745000	90216000	285560000	149390000	136180000	521370000	261310000	260060000	50285	953;1699	47337	303969;303970;303971;303972;303973;303974;303975;303976;303977;303978;303979;303980;303981;303982;303983;303984;303985;303986;303987	408641;408642;408643;408644;408645;408646;408647;408648;408649;408650;408651;408652;408653;408654;408655;408656;408657;408658;408659;408660;408661;408662;408663;408664;408665;408666;408667;408668;408669;408670;408671;408672;408673;408674	408672			34	
THPVLYLFYEDMK	1	Oxidation (M)	1670.8014	0.80143012	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	1	0				By MS/MS	16	0									1				1	78.504	69.062	3	0.00085456	36457	160513_QHF_FH_JSI12Kac_6	70.622	58.706			1.2843	1.3674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2843	1.3674	NaN	1	1	Median	54720000	21214000	33506000	0	0	0	0	0	0	0	0	0	54720000	21214000	33506000	50286	953;1699	47337	303988	408675	408675		526	1	
THQALGILSK	1	Unmodified	1066.6135	0.61349341	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		2	6						4	3	4	3	2	34.07	30.506	2;3	0.00018309	25061	160511_QHF_FH_JSI12i_3	82.417	82.417			1.129	1.0403	46.031	12	7	Median	1.054	0.88482	26.539	3	1	Median	0.90463	1.0675	58.459	4	4	Median	1.2645	1.1699	62.2	3	1	Median	1.09	1.1467	34.675	2	1	Median	846300000	401230000	445060000	146990000	68472000	78520000	372510000	191230000	181280000	166610000	60308000	106300000	160190000	81226000	78965000	50287	1526	47338	303989;303990;303991;303992;303993;303994;303995;303996;303997;303998;303999;304000	408676;408677;408678;408679;408680;408681;408682;408683;408684;408685;408686	408684			11	
THQKFVIATSTK	2	Acetyl (K)	1401.7616	0.76161421	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5		2	3	1	43.088	33.713	2;3	7.8759E-06	18694	160513_QHF_FH_JSI10Kac_6	96.464	81.077			0.1915	0.18741	126.41	6	1	Median	NaN	NaN	NaN	0	0	Median	1.7272	2.0143	2.8724	2	0	Median	0.18924	0.18481	3.3485	3	1	Median	0.14691	0.15053	NaN	1	0	Median	272660000	196990000	75675000	0	0	0	59509000	23256000	36253000	193850000	157220000	36626000	19308000	16512000	2796000	50288	2196	47339	304001;304002;304003;304004;304005;304006	408687;408688;408689;408690;408691;408692;408693;408694;408695;408696	408696	2320		10	
THQLSLDAFLVALK	1	Unmodified	1554.877	0.87697832	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			88.486	82.768	3	0.000174	46770	160513_QHF_FH_JSI10Kac_6	77.776	57.112			0.76062	0.9022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76062	0.9022	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72154000	41414000	30740000	0	0	0	72154000	41414000	30740000	0	0	0	0	0	0	50289	2909	47340	304007	408697	408697			1	
THSAYMLFYK	1	Unmodified	1259.6009	0.60087982	3198	Q70CQ2	USP34	Ubiquitin carboxyl-terminal hydrolase 34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	3	2	2	1	59.523	50.396	2;3	0.00014881	27656	160513_QHF_FH_JSI10Kac_6	97.635	75.889			1.1335	1.0291	17.859	7	4	Median	1.3332	1.1685	13.586	3	3	Median	0.68581	0.81894	6.5638	2	0	Median	1.2406	1.2004	NaN	1	1	Median	0.94241	1.0291	NaN	1	0	Median	166840000	87884000	78960000	67830000	30458000	37372000	51285000	31373000	19912000	30905000	17906000	12999000	16824000	8147200	8676800	50290	3198	47341	304008;304009;304010;304011;304012;304013;304014;304015	408698;408699;408700;408701;408702;408703;408704;408705;408706;408707	408705			10	
THSDQFLVAFK	1	Unmodified	1291.6561	0.65608651	1454	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.76	6.73		7	4					2	8	5	6	5	5	58.507	53.779	2;3	7.3007E-20	29307	160513_QHF_FH_JSI11Kac_6	166.66	107.84			0.96975	1.0173	10.087	20	1	Median	1.1868	0.99406	12.546	4	0	Median	0.87527	1.0203	13.134	6	1	Median	1.0846	1.0201	7.6149	5	0	Median	0.8896	1.0052	6.8601	5	0	Median	3586500000	1928200000	1658300000	401450000	193780000	207680000	800060000	452700000	347360000	1508000000	792010000	715960000	876990000	489700000	387290000	50291	1454	47342	304016;304017;304018;304019;304020;304021;304022;304023;304024;304025;304026;304027;304028;304029;304030;304031;304032;304033;304034;304035;304036	408708;408709;408710;408711;408712;408713;408714;408715;408716;408717;408718;408719;408720;408721;408722;408723;408724;408725;408726;408727;408728;408729;408730;408731;408732;408733;408734;408735;408736;408737;408738;408739	408716			31	
THSEEFTNSLK	1	Unmodified	1291.6044	0.60444487	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	22.163	21.249	2;3	0.010552	17262	160511_QHF_FH_JSI11i_2	43.897	28.695			1.1083	1.1872	55.299	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.721	2.8695	NaN	1	1	Median	1.0229	1.1092	9.613	2	0	Median	101880000	39527000	62355000	0	0	0	0	0	0	37868000	9733500	28135000	64014000	29793000	34221000	50292	4761	47343	304037;304038;304039	408740;408741;408742	408742			2	
THSGLTDGIPLQSISAPGSGIWSDGK	1	Unmodified	2580.282	0.2819951	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	87.446	87.095	3	4.3348E-09	75493	160511_QHF_FH_JSI12i_3	65.118	57.126			0.54207	0.53413	62.666	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34691	0.34293	NaN	1	0	Median	0.847	0.83194	NaN	1	1	Median	173740000	101250000	72488000	0	0	0	0	0	0	46773000	36656000	10116000	126970000	64597000	62372000	50293	21	47344	304040;304041	408743;408744	408744			2	
THSIESSGK	1	Unmodified	944.45632	0.45632407	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	0			By MS/MS		8.5	6.5		1						1				2		4.7035	-0.15972	3	0.0011286	1380	160513_QHF_FH_JSI11Kac_5	53.751	41.538			1.179	1.1797	11.584	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.179	1.1797	11.584	2	0	Median	NaN	NaN	NaN	0	0	Median	101580000	53130000	48450000	0	0	0	0	0	0	101580000	53130000	48450000	0	0	0	50294	1575	47345	304042;304043	408745;408746	408746			1	
THSLVCPETVSR	0	Acetyl (Protein N-term)	1426.6875	0.68746299	3362	Q86WQ0	NR2C2AP	Nuclear receptor 2C2-associated protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	37.888	37.471	2	5.0142E-05	33940	160511_QHF_FH_JSI12i_1	98.048	93.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50295	3362	47346	304044;304045;304046;304047;304048	408747;408748;408749;408750;408751;408752	408748			6	
THSQLLIIDR	0	Unmodified	1194.6721	0.67207093	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				50.047	40.815	3	0.020557	21702	160513_QHF_FH_JSI9Kac_6	37.144	13.824			1.4167	1.2299	NaN	1	1	Median	1.4167	1.2299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10219000	5213100	5005500	10219000	5213100	5005500	0	0	0	0	0	0	0	0	0	50296	104	47347	304049	408753	408753			1	
THSTSSSLGSGESPFSR	0	Unmodified	1722.7809	0.78090569	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			28.714	27.531	3	0.0061164	23858	160511_QHF_FH_JSI9i_2	24.279	19.564			1.0372	1.0534	5.1599	2	1	Median	1.1553	1.0157	NaN	1	0	Median	0.93111	1.0926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37472000	20109000	17363000	28128000	14997000	13130000	9344500	5111600	4233000	0	0	0	0	0	0	50297	5288	47348	304050;304051	408754;408755	408755			2	
THSTTSQAISVGMR	0	Unmodified	1474.7198	0.71982575	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		7	6.38		1	1						1	1	1	1		25.768	21.95	3	0.0039371	17954	160511_QHF_FH_JSI10i_3	50.843	28.645			1.2824	1.1283	28.553	3	2	Median	1.2824	1.1283	NaN	1	1	Median	1.4849	1.6934	NaN	1	1	Median	0.98143	0.97624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	141030000	53476000	87559000	103020000	38791000	64234000	34735000	13228000	21507000	3275300	1457500	1817900	0	0	0	50298	4348	47349	304052;304053;304054	408756;408757;408758	408756			3	
THSVNGITEEADPTIYSGK	1	Unmodified	2017.9593	0.95926398	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								3	3	3	3	45.636	44.761	2;3	7.4295E-18	38372	160511_QHF_FH_JSI11i_2	196.95	188.82			0.90215	0.92183	20.497	12	1	Median	1.1706	0.99968	18.392	3	0	Median	0.62355	0.73917	16.771	3	1	Median	0.86711	0.87272	7.749	3	0	Median	0.90691	1.0113	19.422	3	0	Median	1443000000	751590000	691420000	226830000	102670000	124160000	317280000	196940000	120340000	537610000	268360000	269250000	361300000	183630000	177680000	50299	543	47350	304055;304056;304057;304058;304059;304060;304061;304062;304063;304064;304065;304066	408759;408760;408761;408762;408763;408764;408765;408766;408767;408768;408769;408770;408771;408772;408773;408774;408775;408776;408777;408778;408779;408780;408781;408782	408777			24	
THTDTESEASILGDSGEYK	1	Unmodified	2038.8967	0.89672331	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.445	8	3								2	3	3	3	42.558	41.874	2;3	3.7083E-42	37853	160511_QHF_FH_JSI10i_1	202.4	185.19			0.88999	0.98358	16.757	10	1	Median	1.2057	0.97713	NaN	1	0	Median	0.86658	1.0144	8.3435	3	0	Plateau	0.86535	0.85154	24.688	3	0	Median	0.94099	0.98106	17.465	3	1	Plateau	971990000	466950000	505040000	82984000	39649000	43335000	297230000	164230000	133000000	338900000	157280000	181620000	252870000	105800000	147070000	50300	5593	47351	304067;304068;304069;304070;304071;304072;304073;304074;304075;304076;304077	408783;408784;408785;408786;408787;408788;408789;408790;408791;408792;408793;408794;408795;408796	408791			12	
THTGEKPYK	2	Acetyl (K)	1101.5455	0.54547343	2478;2393	Q13887;Q13360	KLF5;ZNF177	Krueppel-like factor 5;Zinc finger protein 177	no	no	1	0	0	1			By MS/MS		15	0								1				1		12.241	2.7883	2	0.053016	4781	160513_QHF_FH_JSI11Kac_5	43.083	25.843			0.43924	0.44135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43924	0.44135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3855100	2551100	1304000	0	0	0	0	0	0	3855100	2551100	1304000	0	0	0	50301	2478;2393	47352	304078	408797;408798	408797			2	
THTGEKPYR	1	Acetyl (K)	1129.5516	0.55162144	1781;5349	P52747;Q99612;Q499Z4;Q9BSK1;Q86TJ5;Q8N8E2;Q86UD4;O94892;Q9NX65;Q8WXB4;Q9HCG1;Q9UJW8	ZNF143;KLF6;ZNF672;ZNF577;ZNF554;ZNF513;ZNF329;ZNF432;ZSCAN32;ZNF606;ZNF160;ZNF180	Zinc finger protein 143;Krueppel-like factor 6;Zinc finger protein 672;Zinc finger protein 577;Zinc finger protein 554;Zinc finger protein 513;Zinc finger protein 329;Zinc finger protein 432;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 606;Zinc finger protein 160;Zinc finger protein 180	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		2	1	1	12.493	3.9998	3	0.00021032	4288	160513_QHF_FH_JSI12Kac_6	72.928	50.842			0.76591	0.93284	10.502	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72838	0.87961	8.3079	2	0	Median	1.0472	1.0228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58295000	29069000	29226000	0	0	0	34656000	18198000	16458000	23639000	10871000	12769000	0	0	0	50302	1781;5349	47353	304079;304080;304081;304082	408799;408800;408801	408800	1795		3	
THTGKYWTLTATGGVQSTASSK	2	Acetyl (K)	2323.1444	0.14443899	2751	Q16658	FSCN1	Fascin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	62.471	53.153	3	2.9528E-11	28822	160513_QHF_FH_JSI11Kac_6	100.76	88.692			0.47681	0.51689	64.315	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91704	1.0626	NaN	1	0	Median	0.29881	0.29454	NaN	1	0	Median	0.47681	0.51689	NaN	1	0	Median	38922000	24234000	14688000	0	0	0	14139000	6543000	7595700	12825000	9477300	3347300	11958000	8213300	3745100	50303	2751	47354	304083;304084;304085	408802;408803;408804;408805;408806	408802	2665		5	
THTISLPINLK	1	Unmodified	1235.7238	0.72377215	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.75	0.433		1	3								1	2	1	61.25	60.966	2;3	0.00090044	54098	160511_QHF_FH_JSI11i_3	55.353	47.128			0.95672	0.92594	41.009	4	2	Median	NaN	NaN	NaN	0	0	Median	0.39024	0.46074	NaN	1	1	Median	0.99643	0.92594	11.371	2	1	Median	1.007	1.1759	NaN	1	0	Median	169660000	82487000	87171000	0	0	0	17147000	11571000	5575600	80022000	34181000	45841000	72489000	36735000	35755000	50304	15	47355	304086;304087;304088;304089	408807;408808;408809	408807			3	
THTMGGDFSGK	1	Unmodified	1136.4921	0.49205765	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		12.461	12.248	2	0.019652	9593	160511_QHF_FH_JSI11i_2	43.77	28.509			1.6928	1.7044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6928	1.7044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24956000	10509000	14446000	0	0	0	0	0	0	24956000	10509000	14446000	0	0	0	50305	95	47356	304090;304091	408810;408811	408811			2	
THTMTGSPGEGGLLPR	0	Unmodified	1609.7882	0.78823967	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	37.806	37.082	3	0.0012186	32483	160511_QHF_FH_JSI10i_2	50.874	45.268			1.0839	0.92959	32.168	3	0	Median	1.0839	0.92959	NaN	1	0	Median	1.3233	1.5883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86034	0.89253	NaN	1	0	Median	120560000	54482000	66081000	28713000	13630000	15083000	53061000	21966000	31095000	0	0	0	38789000	18886000	19902000	50306	2186	47357	304092;304093;304094	408812	408812			1	
THTQDAVPLTLGQEFSGYVQQVK	1	Unmodified	2545.2813	0.28126682	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.28	5.14	3	14	4						4	5	7	7	6	88.21	86.374	2;3;4	6.402E-61	78687	160511_QHF_FH_JSI10i_2	225.3	216.28			1.009	1.0338	19.624	24	6	Median	1.345	1.1583	25.048	5	2	Median	0.80274	0.97325	15.852	7	3	Median	1.009	1.0147	16.823	6	0	Median	1.0517	1.1466	19.606	6	1	Median	6007800000	3076400000	2931300000	1177800000	557290000	620480000	1441800000	807590000	634260000	2010300000	1036800000	973510000	1377800000	674730000	703080000	50307	887	47358	304095;304096;304097;304098;304099;304100;304101;304102;304103;304104;304105;304106;304107;304108;304109;304110;304111;304112;304113;304114;304115;304116;304117;304118;304119	408813;408814;408815;408816;408817;408818;408819;408820;408821;408822;408823;408824;408825;408826;408827;408828;408829;408830;408831;408832;408833;408834;408835;408836;408837;408838;408839;408840;408841;408842;408843;408844;408845;408846;408847;408848;408849;408850;408851;408852;408853;408854;408855;408856;408857;408858;408859;408860;408861;408862;408863;408864;408865;408866;408867;408868;408869;408870;408871	408858			59	
THTTALAGR	0	Unmodified	926.49338	0.49337828	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By matching	By MS/MS			2.33	0.471		2	1							1	2			6.3249	5.8781	2	0.011448	3884	160511_QHF_FH_JSI10i_3	48.794	30.063			0.94982	0.99582	10.838	3	0	Plateau	1.0845	0.91043	NaN	1	0	Median	0.84446	0.98798	13.797	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	211760000	104350000	107400000	73216000	36546000	36670000	138540000	67808000	70734000	0	0	0	0	0	0	50308	5474	47359	304120;304121;304122	408872;408873	408872			2	
THTYYQVLIDAR	0	Unmodified	1478.7518	0.75177781	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	2	2	5	5	58.874	52.661	2;3	2.1742E-16	28719	160513_QHF_FH_JSI11Kac_6	172.17	142.43			1.1142	1.1114	11.559	12	3	Median	1.2515	1.075	2.6805	2	1	Median	0.80363	0.95502	11.82	2	0	Median	1.3129	1.1823	16.981	4	1	Linear	1.0812	1.1428	2.7218	4	1	Median	600640000	282910000	317720000	101700000	42421000	59274000	212650000	114700000	97954000	128770000	57942000	70833000	157520000	67853000	89665000	50309	5534	47360	304123;304124;304125;304126;304127;304128;304129;304130;304131;304132;304133;304134;304135;304136	408874;408875;408876;408877;408878;408879;408880;408881;408882;408883;408884;408885;408886;408887;408888;408889;408890;408891	408878			17	
THVADFAPEVAWVTR	0	Unmodified	1697.8526	0.85255449	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							1	2	5	4	77.39	76.826	2;3	3.7548E-12	68444	160511_QHF_FH_JSI11i_3	108.66	98.74			0.91563	0.99307	17.7	9	2	Median	1.3447	1.1423	NaN	1	0	Median	0.88929	1.0962	NaN	1	0	Median	1.0988	1.0563	10.764	3	1	Plateau	0.84142	0.92681	20.85	4	1	Median	2282700000	1225900000	1056800000	141190000	64469000	76724000	279230000	157400000	121820000	762540000	387110000	375430000	1099700000	616920000	482820000	50310	878	47361	304137;304138;304139;304140;304141;304142;304143;304144;304145;304146;304147;304148	408892;408893;408894;408895;408896;408897;408898;408899;408900;408901;408902;408903;408904;408905;408906;408907;408908;408909;408910;408911;408912;408913;408914	408894			23	
THVDILNDFTLDVMK	1	Unmodified	1759.8815	0.88147135	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	98.226	97.923	3	0.047806	84200	160511_QHF_FH_JSI12i_2	27.643	21.739			0.68635	0.75559	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68635	0.75559	NaN	1	1	Median	8509200	4817200	3692000	0	0	0	0	0	0	0	0	0	8509200	4817200	3692000	50311	989	47362	304149	408915	408915			1	
THVGSYK	1	Unmodified	790.39735	0.39735263	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	5.7904	5.6569	2	0.033424	3323	160511_QHF_FH_JSI12i_3	50.632	41.391			1.1265	1.1113	18.875	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68229	0.79627	NaN	1	0	Median	1.0553	1.0077	NaN	1	0	Median	1.1265	1.1565	NaN	1	0	Median	746290000	326100000	420190000	0	0	0	62842000	35498000	27344000	295260000	119910000	175350000	388190000	170690000	217500000	50312	2314	47363	304150;304151;304152	408916;408917	408917			2	
THWGYYTWPK	1	Unmodified	1337.6193	0.61930707	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									4		3		1	64.171	55.071	2;3	0.0075133	30018	160513_QHF_FH_JSI10Kac_6	48.44	40.336			0.79314	0.88285	0.72814	2	2	Median	NaN	NaN	NaN	0	0	Median	0.74157	0.87831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8483	0.88741	NaN	1	1	Median	32183000	18585000	13598000	0	0	0	25123000	14420000	10703000	0	0	0	7060300	4165200	2895100	50313	2588	47364	304153;304154;304155;304156	408918;408919;408920;408921	408920			4	
THWTLDK	1	Unmodified	899.45012	0.45011648	3965;4363	Q96AC1;Q9BQL6	FERMT2;FERMT1	Fermitin family homolog 2;Fermitin family homolog 1	no	no	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									2	2	22.212	21.9	2;3	0.026294	18074	160511_QHF_FH_JSI11i_3	54.157	18.113			0.5925	0.58556	78.862	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57931	0.54116	45.991	2	1	Median	0.94526	1.0127	112.32	2	1	Median	277650000	143140000	134510000	0	0	0	0	0	0	132770000	64932000	67842000	144880000	78205000	66670000	50314	3965;4363	47365	304157;304158;304159;304160	408922;408923;408924	408922			3	
THWTLDKYGIQADAK	2	Acetyl (K)	1787.8842	0.88424855	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.966	62.547	3	5.2268E-05	33897	160513_QHF_FH_JSI11Kac_6	94.017	76.216			0.43047	0.41558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43047	0.41558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27008000	15757000	11251000	0	0	0	0	0	0	27008000	15757000	11251000	0	0	0	50315	3965	47366	304161	408925;408926	408925	3014		2	
THYDAKK	2	Acetyl (K)	903.44503	0.4450311	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	7.339	0.39007	3	0.034864	2496	160513_QHF_FH_JSI12Kac_6	42.869	6.9891			0.22656	0.25733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22656	0.25733	NaN	1	1	Median	2723700	1801900	921790	0	0	0	0	0	0	0	0	0	2723700	1801900	921790	50316	2587	47367	304162	408927	408927			1	
THYDPPRK	1	Unmodified	1012.509	0.50902834	1383;1864	P31943;P55795	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.88	0.331		1	7							3	2	2	1	6.5231	6.2187	2;3	0.0031374	3955	160511_QHF_FH_JSI9i_3	46.39	36.974			0.71642	0.73782	23.085	8	1	Median	1.1781	0.95636	8.3486	3	1	Median	0.5471	0.64325	2.6956	2	0	Median	0.59223	0.55674	3.1954	2	0	Median	0.85996	0.85971	NaN	1	0	Median	2020500000	1128100000	892430000	665140000	306180000	358960000	707240000	439340000	267910000	489530000	286870000	202660000	158600000	95688000	62909000	50317	1383;1864	47368	304163;304164;304165;304166;304167;304168;304169;304170	408928;408929;408930;408931;408932;408933;408934;408935;408936;408937;408938	408934			11	
THYIVGYNLPSYEYLYNLGDQYALK	1	Unmodified	2996.4596	0.45962512	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.29		4	1						12	4	4	5	4	93.804	87.91	2;3;4	0	45863	160513_QHF_FH_JSI11Kac_6	359.91	324.03			1.0158	1.0349	15.727	17	2	Median	1.1245	0.93076	19.48	4	1	Median	0.87366	1.0327	9.1398	4	0	Median	1.1326	1.0797	19.418	5	0	Median	1.0093	1.052	9.4979	4	1	Median	16562000000	7952500000	8609500000	2738900000	1189500000	1549400000	3583400000	1950500000	1632800000	6333900000	2851900000	3482100000	3905700000	1960500000	1945200000	50318	816	47369	304171;304172;304173;304174;304175;304176;304177;304178;304179;304180;304181;304182;304183;304184;304185;304186;304187	408939;408940;408941;408942;408943;408944;408945;408946;408947;408948;408949;408950;408951;408952;408953;408954;408955;408956;408957;408958;408959;408960;408961;408962;408963;408964;408965;408966;408967	408945			29	
THYQADIER	0	Unmodified	1131.5309	0.530886	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	13.328	13.02	2;3	0.00017006	9931	160511_QHF_FH_JSI12i_3	67.726	41.269			1.2596	1.1717	14.975	7	0	Median	1.3592	1.1706	NaN	1	0	Median	0.86268	1.0399	NaN	1	0	Median	1.2413	1.2122	28.223	2	0	Median	1.2596	1.2743	9.8787	3	0	Median	430420000	195020000	235400000	37268000	15370000	21898000	52428000	29234000	23193000	125040000	57641000	67395000	215690000	92774000	122910000	50319	707	47370	304188;304189;304190;304191;304192;304193;304194	408968;408969;408970;408971;408972;408973;408974;408975;408976	408975			9	
THYSNIEANESEEVR	0	Unmodified	1776.7915	0.79147037	813	P04632	CAPNS1	Calpain small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	3.41		8	4					1		2	2	5	4	23.594	23.012	2;3	3.2343E-65	19376	160511_QHF_FH_JSI11i_3	265.13	219.12			0.92443	0.98207	5.5073	12	0	Median	1.2228	1.0346	1.3655	2	0	Median	0.80264	0.9781	3.3981	2	0	Median	0.98604	0.98717	5.3878	4	0	Median	0.88097	0.92775	5.0792	4	0	Median	1957500000	1011700000	945780000	278540000	128200000	150340000	315550000	183790000	131760000	823270000	415340000	407920000	540110000	284360000	255760000	50320	813	47371	304195;304196;304197;304198;304199;304200;304201;304202;304203;304204;304205;304206;304207	408977;408978;408979;408980;408981;408982;408983;408984;408985;408986;408987;408988;408989;408990;408991;408992;408993;408994;408995;408996;408997;408998;408999;409000	408980			24	
TIAALLPCLLDK	1	Unmodified	1326.7581	0.75810874	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	98.927	98.83	2	0.00010626	87683	160511_QHF_FH_JSI11i_3	88.681	84.229			1.4046	1.1917	53.649	9	6	Median	2.1526	1.8482	62.059	2	1	Median	1.5316	1.7425	71.128	3	3	Median	1.0733	1.0036	23.572	2	0	Median	1.4194	1.4331	62.193	2	2	Median	306820000	130070000	176760000	16270000	5976300	10294000	59498000	25775000	33723000	66667000	30195000	36472000	164390000	68119000	96268000	50321	2997	47372	304208;304209;304210;304211;304212;304213;304214;304215;304216	409001;409002;409003;409004;409005;409006;409007;409008;409009	409001			9	
TIAATPIQTLPQSQSTPK	1	Unmodified	1881.0207	0.020742027	1062	P14859	POU2F1	POU domain, class 2, transcription factor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	56.077	55.294	2	5.3214E-12	50144	160511_QHF_FH_JSI11i_1	175.28	154.05			0.86745	0.74871	49.335	2	1	Median	0.66869	0.52822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1253	1.0612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49839000	25343000	24496000	26078000	16032000	10046000	0	0	0	23761000	9310600	14450000	0	0	0	50322	1062	47373	304217;304218;304219;304220	409010;409011;409012;409013	409010			4	
TIADLELHYQEFIR	0	Unmodified	1746.8941	0.89408495	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	81.664	81.114	2;3	2.5587E-07	72232	160511_QHF_FH_JSI10i_2	92.866	66.823			1.1067	1.0915	23.172	6	1	Median	1.0791	0.9159	NaN	1	0	Median	0.66448	0.82435	NaN	1	0	Median	1.3586	1.2885	19.008	2	1	Median	1.1665	1.2247	20.751	2	0	Median	427390000	205750000	221640000	52172000	25582000	26590000	69023000	39221000	29802000	152820000	72706000	80117000	153380000	68246000	85132000	50323	1085	47374	304221;304222;304223;304224;304225;304226;304227	409014;409015;409016;409017;409018;409019;409020;409021	409020			8	
TIADSLINSFLK	1	Unmodified	1320.7289	0.7289171	2621	Q15058	KIF14	Kinesin-like protein KIF14	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	95.962	95.783	2	0.00020646	82896	160511_QHF_FH_JSI12i_3	80.102	75.411			0.92339	0.9712	12.242	6	0	Median	1.1727	0.99453	NaN	1	0	Median	0.91446	1.1351	NaN	1	0	Median	1.0177	0.96916	16.155	2	0	Median	0.85121	0.88908	9.1365	2	0	Median	68813000	36132000	32682000	9374000	4706600	4667400	10484000	6449700	4034400	24115000	12432000	11684000	24840000	12544000	12296000	50324	2621	47375	304228;304229;304230;304231;304232;304233	409022;409023;409024;409025	409025			4	
TIAECLADELINAAK	1	Unmodified	1630.8236	0.82362212	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.711	7	8	3							2	5	5	6	97.043	96.864	2;3	2.13E-25	84826	160511_QHF_FH_JSI9i_2	221.55	177.24			1.018	1.0349	29.772	17	6	Median	1.1269	0.95051	11.348	2	1	Median	1.0037	1.2185	19.638	4	1	Median	0.79234	0.79459	23.919	5	1	Median	1.2699	1.322	16.18	6	3	Median	1013600000	520610000	492960000	147220000	82584000	64641000	257620000	135290000	122340000	308170000	181490000	126680000	300560000	121250000	179310000	50325	1594	47376	304234;304235;304236;304237;304238;304239;304240;304241;304242;304243;304244;304245;304246;304247;304248;304249;304250;304251	409026;409027;409028;409029;409030;409031;409032;409033;409034;409035;409036;409037;409038;409039;409040;409041;409042;409043;409044;409045;409046;409047;409048;409049;409050;409051;409052;409053;409054;409055;409056;409057;409058	409046			33	
TIAEIFGNPNYLR	0	Unmodified	1506.7831	0.78307794	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	78.556	77.862	2	1.0996E-52	67653	160511_QHF_FH_JSI12i_3	258.52	232.01			1.0411	1.0341	10.455	8	2	Median	1.3336	1.1391	NaN	1	0	Median	0.90265	1.0816	20.112	2	0	Median	1.0924	1.0373	11.184	3	2	Median	0.94486	1.0123	2.5895	2	0	Median	1340000000	662670000	677310000	174950000	73070000	101880000	255050000	133950000	121100000	600600000	286870000	313720000	309380000	168780000	140600000	50326	2730	47377	304252;304253;304254;304255;304256;304257;304258;304259	409059;409060;409061;409062;409063;409064;409065;409066;409067;409068;409069;409070;409071;409072	409072			14	
TIAEQLAEK	1	Unmodified	1001.5393	0.53932542	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	1	3	2	27.475	26.803	2	0.00022764	22546	160511_QHF_FH_JSI12i_2	100.02	39.107			1.0212	0.90144	13.615	8	5	Median	1.0825	0.90144	1.1669	2	1	Median	0.71429	0.86654	NaN	1	0	Median	0.99269	0.97727	17.383	3	3	Median	0.94447	1.0032	22.267	2	1	Median	1431100000	719320000	711750000	361740000	176850000	184900000	287100000	154050000	133050000	521540000	290710000	230830000	260680000	97709000	162970000	50327	3216	47378	304260;304261;304262;304263;304264;304265;304266;304267	409073;409074;409075;409076;409077;409078;409079;409080;409081	409074			9	
TIAETEAAYLK	1	Unmodified	1208.6289	0.62886871	377	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	43.957	43.477	2	4.8618E-06	39279	160511_QHF_FH_JSI11i_1	111.06	88.82			0.96982	1.0037	11.594	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72611	0.85504	NaN	1	0	Median	1.0788	1.0711	NaN	1	0	Median	0.96982	1.0037	NaN	1	0	Median	265130000	150380000	114750000	0	0	0	89195000	48574000	40621000	102880000	57397000	45483000	73053000	44408000	28645000	50328	377	47379	304268;304269;304270	409082;409083;409084	409083			3	
TIAFAHDSTR	0	Unmodified	1117.5516	0.55162144	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	18.892	18.905	2;3	0.0011267	15237	160511_QHF_FH_JSI12i_3	72.643	48.488			0.48684	0.48774	42.918	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70705	0.66067	NaN	1	1	Median	0.33522	0.36007	NaN	1	1	Median	69843000	43087000	26757000	0	0	0	0	0	0	49657000	28978000	20678000	20186000	14108000	6078200	50329	2666	47380	304271;304272;304273;304274	409085;409086;409087;409088	409087			4	
TIAFLLPMFR	0	Unmodified	1207.6787	0.67873621	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	98.438	93.595	2	1.4708E-24	51532	160513_QHF_FH_JSI10Kac_6	205.57	163.46			1.0874	1.0979	16.072	7	0	Median	1.172	0.98033	32.694	2	0	Median	0.86304	1.0311	17.383	2	0	Median	1.0935	1.0239	NaN	1	0	Median	1.0916	1.1161	2.3284	2	0	Median	4919100000	2464600000	2454500000	952510000	402880000	549630000	1802300000	935340000	866920000	1302200000	701960000	600230000	862110000	424420000	437690000	50330	3216	47381	304275;304276;304277;304278;304279;304280;304281	409089;409090;409091;409092;409093;409094;409095;409096;409097;409098	409098			10	
TIAFLLPMFR	0	Oxidation (M)	1223.6737	0.67365083	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	90.026	81.725	2	1.9335E-06	43794	160513_QHF_FH_JSI12Kac_6	121.85	94.107			1.0273	1.04	6.3885	8	0	Median	1.2843	1.077	5.735	2	0	Median	0.894	1.0493	0.47823	2	0	Median	1.0273	1.0007	3.0746	2	0	Median	1.0281	1.1025	11.811	2	0	Median	996630000	472370000	524260000	275200000	108270000	166920000	320960000	173840000	147110000	173540000	79801000	93740000	226930000	110450000	116480000	50331	3216	47381	304282;304283;304284;304285;304286;304287;304288;304289	409099;409100;409101;409102;409103;409104;409105;409106;409107;409108;409109	409106		2222	8	
TIAIGKVLK	2	Acetyl (K)	983.63792	0.63791725	1069;3467	P15170;Q8IYD1	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.452							2	5		1	2	2	2	72.995	62.347	2	0.0055768	33624	160513_QHF_FH_JSI12Kac_4	72.485	48.33			0.87336	0.73986	44.337	7	0	Median	0.87336	0.73986	NaN	1	0	Median	0.99787	1.1897	73.79	2	0	Median	0.59932	0.59917	15.43	2	0	Median	1.0176	1.1009	7.1438	2	0	Median	92565000	46675000	45890000	8216000	3756600	4459300	27034000	13220000	13814000	26358000	14914000	11444000	30957000	14785000	16172000	50332	1069;3467	47382	304290;304291;304292;304293;304294;304295;304296	409110;409111;409112;409113;409114;409115	409112	908		6	
TIAIIAEGIPEALTR	0	Unmodified	1566.8981	0.8981077	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.95	3.15	3	8	7						1	4	4	6	5	94.451	93.645	2;3	8.54E-15	84190	160511_QHF_FH_JSI11i_3	198.55	176.55			1.0373	1.0303	18.702	18	0	Median	1.433	1.2226	16.244	3	0	Median	0.78623	1.0303	12.053	4	0	Linear	1.1153	1.0783	22.682	6	0	Median	0.88276	0.96473	23.052	5	0	Median	1630100000	771320000	858820000	207480000	77397000	130080000	277880000	146470000	131400000	613020000	269530000	343490000	531760000	277920000	253840000	50333	1798	47383	304297;304298;304299;304300;304301;304302;304303;304304;304305;304306;304307;304308;304309;304310;304311;304312;304313;304314;304315	409116;409117;409118;409119;409120;409121;409122;409123;409124;409125;409126;409127;409128;409129;409130;409131;409132;409133;409134;409135;409136;409137;409138;409139;409140;409141;409142	409117			26	
TIAIIAEGIPEALTRK	1	Unmodified	1694.9931	0.99307071	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	2	1	2	84.933	83.301	3	1.8079E-07	71170	160511_QHF_FH_JSI10i_3	122.31	105.02			0.83242	0.77218	33.083	5	5	Median	0.93272	0.7443	NaN	1	1	Median	0.95347	1.1057	50.775	2	2	Median	0.83242	0.78611	NaN	1	1	Median	0.7194	0.7299	NaN	1	1	Median	593560000	261860000	331700000	161830000	71407000	90423000	196650000	98254000	98398000	200720000	74591000	126130000	34354000	17606000	16747000	50334	1798	47384	304316;304317;304318;304319;304320;304321	409143;409144;409145;409146;409147;409148;409149	409144			7	
TIALFYLGSFDSIVR	0	Unmodified	1700.9138	0.91375776	2240	Q06136	KDSR	3-ketodihydrosphingosine reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	2		2	1	96.832	87.554	2;3	2.5167E-23	49806	160513_QHF_FH_JSI11Kac_6	197.3	172.96			1.019	0.87292	11.243	5	1	Median	0.9894	0.84336	4.8711	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0537	1.0124	4.1523	2	0	Median	0.76587	0.81299	NaN	1	0	Median	434310000	218040000	216270000	152390000	73574000	78821000	0	0	0	199990000	105860000	94127000	81924000	38605000	43319000	50335	2240	47385	304322;304323;304324;304325;304326	409150;409151;409152;409153;409154;409155;409156	409150			7	
TIALNGVEDVR	0	Unmodified	1185.6354	0.63535107	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	50.973	50.145	2	1.8515E-05	42984	160511_QHF_FH_JSI12i_2	103.87	71.06			0.93037	0.973	8.9294	8	2	Median	1.2045	1.0061	6.0902	2	0	Median	0.74007	0.89757	14.736	2	1	Median	0.92159	0.90111	8.7148	2	1	Median	0.93037	0.99327	1.5594	2	0	Median	985230000	531640000	453600000	182070000	94349000	87722000	257560000	151390000	106170000	297400000	155330000	142070000	248200000	130570000	117630000	50336	2825	47386	304327;304328;304329;304330;304331;304332;304333;304334	409157;409158;409159;409160;409161;409162;409163	409158			7	
TIAMDGTEGLVR	0	Unmodified	1261.6336	0.63363651	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.19	4	3					3	1		3	2	3	3	55.969	51.23	2	9.1442E-16	46356	160511_QHF_FH_JSI10i_1	157.24	108.15			1.0791	1.066	9.2925	10	1	Median	1.1218	0.92655	17.403	3	0	Plateau	0.87006	1.0433	0.87146	2	0	Median	1.1097	1.0826	2.2303	3	1	Plateau	0.96966	1.0529	10.164	2	0	Median	14615000000	7208000000	7406800000	3682500000	1597200000	2085200000	3494800000	1884600000	1610200000	5287500000	2553300000	2734200000	2150100000	1172900000	977170000	50337	851	47387	304335;304336;304337;304338;304339;304340;304341;304342;304343;304344;304345	409164;409165;409166;409167;409168;409169;409170;409171;409172;409173;409174;409175;409176;409177;409178	409172			15	
TIAMDGTEGLVR	0	Oxidation (M)	1277.6286	0.62855113	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.16	3		1			1	3			2	2	2	2	40.297	34.912	2	3.7169E-05	20184	160513_QHF_FH_JSI12Kac_4	91.584	61.329			0.7232	0.82301	46.492	6	2	Median	2.9508	2.364	NaN	1	0	Median	0.7232	0.85242	0.64797	2	1	Median	0.74021	0.72553	13.511	2	1	Median	0.66743	0.73745	NaN	1	0	Median	1276100000	698420000	577720000	244000000	75485000	168510000	444830000	281090000	163730000	562280000	326770000	235510000	25039000	15067000	9971900	50338	851	47387	304346;304347;304348;304349;304350;304351;304352;304353	409179;409180;409181;409182;409183;409184;409185;409186;409187	409187		376	9	
TIANMFGSSEK	1	Unmodified	1183.5543	0.55432356	4976	Q9NRZ9	HELLS	Lymphoid-specific helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	43.901	43.117	2	0.0022845	37904	160511_QHF_FH_JSI10i_2	57.348	41.686			1.3471	1.4035	2.1383	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.1412	1.3956	NaN	1	0	Median	1.5507	1.4475	NaN	1	1	Median	1.3471	1.4491	NaN	1	1	Median	108540000	49154000	59389000	0	0	0	38348000	18522000	19827000	38182000	14095000	24087000	32012000	16537000	15475000	50339	4976	47388	304354;304355;304356	409188;409189;409190	409190			3	
TIAPALVSK	1	Unmodified	898.54877	0.54876789	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.77	6.41	4	6	4		1	2	3	5	5	7	9	8	6	44.068	38.559	2	3.6513E-06	33097	160511_QHF_FH_JSI12i_2	122.13	106.7			0.92982	0.92504	42.313	29	9	Median	1.1387	0.94898	42.353	7	4	Median	0.88409	1.0071	25.735	8	2	Median	0.93572	0.91828	54.094	8	2	Median	0.7773	0.83039	41.418	6	1	Median	88779000000	37136000000	51643000000	21247000000	8345400000	12902000000	26654000000	11749000000	14905000000	23267000000	9610000000	13657000000	17611000000	7431500000	10179000000	50340	854	47389	304357;304358;304359;304360;304361;304362;304363;304364;304365;304366;304367;304368;304369;304370;304371;304372;304373;304374;304375;304376;304377;304378;304379;304380;304381;304382;304383;304384;304385;304386	409191;409192;409193;409194;409195;409196;409197;409198;409199;409200;409201;409202;409203;409204;409205;409206;409207;409208;409209;409210;409211;409212;409213;409214;409215;409216;409217;409218;409219;409220;409221;409222;409223;409224;409225;409226;409227;409228;409229;409230;409231;409232;409233;409234;409235;409236;409237;409238;409239;409240;409241;409242;409243;409244;409245;409246;409247;409248;409249;409250;409251;409252;409253;409254;409255;409256;409257;409258;409259;409260;409261;409262;409263;409264;409265;409266;409267;409268;409269	409200			79	
TIAPALVSKK	2	Unmodified	1026.6437	0.64373091	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	4.89		1	9						2	2	5	2	3	28.579	27.865	2;3	1.3541E-05	23436	160511_QHF_FH_JSI10i_3	103.34	86.504			0.62116	0.49839	76.434	9	9	Median	0.62116	0.49839	NaN	1	1	Median	0.28405	0.32986	106.76	4	4	Median	0.38259	0.36581	8.994	2	2	Median	0.80571	0.81856	3.2394	2	2	Median	3904100000	2083300000	1820800000	232190000	94562000	137620000	1474500000	1034700000	439770000	645040000	352370000	292670000	1552400000	601650000	950720000	50341	854	47390	304387;304388;304389;304390;304391;304392;304393;304394;304395;304396;304397;304398	409270;409271;409272;409273;409274;409275;409276;409277;409278;409279;409280;409281;409282;409283;409284	409274			15	
TIAPALVSKK	2	Acetyl (K)	1068.6543	0.6542956	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2		1	1	2	1	57.48	46.727	2	4.722E-05	25629	160513_QHF_FH_JSI11Kac_5	114.4	88.017			0.73524	0.87706	43.643	5	0	Median	1.135	0.93773	NaN	1	0	Median	0.73524	0.87706	NaN	1	0	Median	0.42747	0.41879	13.158	2	0	Median	0.87712	0.94379	NaN	1	0	Median	109870000	68440000	41427000	6129900	3385800	2744100	20980000	12154000	8826100	63431000	44667000	18764000	19326000	8233000	11093000	50342	854	47390	304399;304400;304401;304402;304403	409285;409286;409287;409288;409289;409290	409290	519		6	
TIAPCQK	1	Unmodified	816.41637	0.41637351	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	8.56	5.66		3	1			2	3			1	1	3	4	11.727	7.1936	2	0.0025238	5639	160513_QHF_FH_JSI11Kac_4	102.98	77.981			0.83308	0.90166	26.557	9	0	Median	1.0787	0.9308	NaN	1	0	Median	0.74548	0.87229	NaN	1	0	Median	0.73835	0.75226	3.9633	3	0	Plateau	1.1653	1.253	24.392	4	0	Median	997480000	548290000	449190000	189050000	82490000	106560000	9984000	5077700	4906300	430030000	268180000	161860000	368410000	192550000	175860000	50343	1480	47391	304404;304405;304406;304407;304408;304409;304410;304411;304412	409291;409292;409293;409294;409295;409296;409297	409294			7	
TIAPIIGR	0	Unmodified	839.52289	0.52288749	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			46.796	45.21	2	0.01211	37015	160511_QHF_FH_JSI9i_3	53.554	36.612			1.0139	0.98916	17.031	2	0	Median	1.3588	1.1158	NaN	1	0	Median	0.75659	0.87693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	206430000	100380000	106050000	88624000	34394000	54230000	117810000	65982000	51823000	0	0	0	0	0	0	50344	4271	47392	304413;304414	409298;409299;409300	409300			3	
TIAPQNAPR	0	Unmodified	966.52468	0.52467841	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.54	4	3	1				3			2	3	2	4	16.655	14.017	2	5.7004E-06	12149	160511_QHF_FH_JSI12i_1	114.78	99.151			0.93171	0.95865	22.366	11	0	Median	0.99606	0.83532	24.642	2	0	Median	0.81468	0.98278	19.39	3	0	Median	0.95679	0.93221	2.8475	2	0	Median	0.82769	0.88194	27.896	4	0	Linear	1537400000	836080000	701280000	326500000	166010000	160490000	427730000	248090000	179650000	295040000	144080000	150960000	488100000	277910000	210180000	50345	5124	47393	304415;304416;304417;304418;304419;304420;304421;304422;304423;304424;304425	409301;409302;409303;409304;409305;409306;409307;409308;409309;409310;409311;409312;409313;409314	409303			14	
TIAPQNAPRDESR	0	Unmodified	1453.7274	0.72735397	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			13.108	12.481	3	0.0039607	10164	160511_QHF_FH_JSI9i_2	38.799	26.238			1.4475	1.5001	5.6282	2	0	Median	1.6409	1.4415	NaN	1	0	Median	1.2768	1.561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65759000	28264000	37495000	27456000	12395000	15061000	38303000	15868000	22435000	0	0	0	0	0	0	50346	5124	47394	304426;304427	409315;409316	409315			2	
TIAQAVYGAK	1	Unmodified	1020.5604	0.56039521	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		5.25	5.07		2	1				1			2		2		30.976	27.36	2	0.00046386	22941	160511_QHF_FH_JSI11i_2	88.37	61.116			1.789	1.7793	28.063	3	3	Median	1.5761	1.2992	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0199	2.0115	17.351	2	2	Median	NaN	NaN	NaN	0	0	Median	84266000	36799000	47468000	34953000	15783000	19170000	0	0	0	49313000	21016000	28297000	0	0	0	50347	3141	47395	304428;304429;304430;304431	409317;409318;409319;409320	409320			4	
TIAQDYGVLK	1	Unmodified	1106.5972	0.59717465	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.05	4	5	4			3	3	4		5	6	6	6	48.589	43.659	2	2.1202E-24	25183	160513_QHF_FH_JSI11Kac_4	177.06	124.66			0.91633	0.88705	42.757	23	2	Median	1.6302	1.3556	30.348	5	0	Median	0.53449	0.64272	20.165	6	1	Median	0.84345	0.81542	17.193	6	1	Median	1.3006	1.3677	12.473	6	0	Median	16829000000	8006600000	8822700000	3633800000	1274400000	2359400000	3829600000	2496000000	1333600000	5399300000	2774700000	2624600000	3966600000	1461500000	2505100000	50348	2249	47396	304432;304433;304434;304435;304436;304437;304438;304439;304440;304441;304442;304443;304444;304445;304446;304447;304448;304449;304450;304451;304452;304453;304454	409321;409322;409323;409324;409325;409326;409327;409328;409329;409330;409331;409332;409333;409334;409335;409336;409337;409338;409339;409340;409341;409342;409343;409344;409345;409346;409347;409348;409349;409350;409351;409352;409353;409354;409355;409356;409357;409358;409359;409360;409361;409362;409363;409364;409365;409366;409367;409368	409342			48	
TIAQGNLSNTDVQAAK	1	Unmodified	1629.8322	0.83221298	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	5.26	4				4	6				1	5	3	5	40.382	33.834	2;3	1.7995E-209	29990	160511_QHF_FH_JSI11i_1	336.1	285.97			1.0325	1.0983	25.591	14	4	Median	1.1736	0.94913	NaN	1	0	Median	0.95821	1.1131	28.534	5	2	Median	0.76241	0.7325	28.22	3	0	Plateau	1.0953	1.1812	28.812	5	2	Median	3745300000	1854800000	1890500000	899120000	425290000	473830000	1066100000	626260000	439820000	976530000	446220000	530310000	803550000	357020000	446530000	50349	1216	47397	304455;304456;304457;304458;304459;304460;304461;304462;304463;304464;304465;304466;304467;304468	409369;409370;409371;409372;409373;409374;409375;409376;409377;409378;409379;409380;409381;409382;409383;409384;409385;409386;409387;409388;409389;409390;409391;409392;409393	409371			25	
TIAQMIEDEQREK	1	Unmodified	1589.7719	0.7719209	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.4	0.49		3	2								3	2		37.692	36.728	2;3	0.00055102	32147	160511_QHF_FH_JSI10i_2	74.76	49.905			1.6477	1.9819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6477	1.9819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100810000	53518000	47287000	0	0	0	100810000	53518000	47287000	0	0	0	0	0	0	50350	681	47398	304469;304470;304471;304472;304473	409394;409395;409396;409397;409398	409398			5	
TIATALEYVYK	1	Unmodified	1270.6809	0.68090428	2096	P78537	BLOC1S1	Biogenesis of lysosome-related organelles complex 1 subunit 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	71.003	70.115	2	2.8036E-06	62353	160511_QHF_FH_JSI10i_2	112.71	88.756			0.89224	0.86594	12.599	4	0	Median	0.93954	0.79104	NaN	1	0	Median	0.62323	0.75773	NaN	1	0	Median	0.95523	0.94794	NaN	1	0	Median	0.84733	0.97267	NaN	1	0	Median	212220000	116620000	95600000	40356000	25782000	14574000	36592000	19708000	16884000	87691000	42287000	45404000	47581000	28843000	18738000	50351	2096	47399	304474;304475;304476;304477	409399;409400;409401	409401			2	
TIATSQNR	0	Unmodified	889.46174	0.4617438	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.97	5	4	4				2	4		4	5	5	5	6.4968	3.2024	2	6.6295E-05	3681	160511_QHF_FH_JSI11i_2	133.81	53.435			0.99893	0.92716	17.004	18	1	Median	1.1207	0.90475	5.4283	4	0	Median	0.75824	0.91644	14.358	5	0	Median	1.1139	1.1162	19.919	5	0	Median	0.81264	0.8915	18.378	4	1	Median	11978000000	6314200000	5663600000	2462200000	1217200000	1245000000	2769400000	1665700000	1103700000	3620200000	1769300000	1850800000	3126100000	1662000000	1464100000	50352	4296	47400	304478;304479;304480;304481;304482;304483;304484;304485;304486;304487;304488;304489;304490;304491;304492;304493;304494;304495;304496	409402;409403;409404;409405;409406;409407;409408;409409;409410;409411;409412;409413;409414;409415;409416;409417;409418;409419;409420	409418			19	
TIAVDFASEDIYDK	1	Unmodified	1585.7512	0.75116869	2854	Q53GQ0	HSD17B12	Very-long-chain 3-oxoacyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	73.921	73.318	2	1.9665E-06	66830	160511_QHF_FH_JSI12i_1	130.56	116.41			1.0316	1.1302	14.411	3	1	Plateau	1.0316	0.84731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	0.98562	NaN	1	1	Median	1.0788	1.1302	NaN	1	0	Median	264260000	123880000	140380000	47204000	23517000	23687000	0	0	0	95839000	41860000	53979000	121220000	58503000	62714000	50353	2854	47401	304497;304498;304499	409421;409422;409423;409424	409422			4	
TIAYENK	1	Unmodified	837.42323	0.42323303	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.514	13.077	2	0.0044769	10667	160511_QHF_FH_JSI10i_1	98.418	38.777			1.3858	0.94796	59.407	4	0	Linear	1.6762	1.3702	NaN	1	0	Median	0.9758	1.136	NaN	1	0	Median	1.1457	1.1087	NaN	1	0	Median	3.7994	3.8762	NaN	1	0	Median	511130000	217530000	293610000	129310000	57085000	72228000	139190000	72268000	66919000	160890000	78135000	82758000	81742000	10040000	71701000	50354	2271	47402	304500;304501;304502;304503	409425;409426;409427;409428	409428			4	
TICAILENYQTEK	1	Unmodified	1581.7709	0.77085827	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.3		5	2					2		1	2	4	2	62.818	60.716	2	5.5044E-22	51932	160511_QHF_FH_JSI12i_2	171.92	119.13			1.3347	1.4195	58.089	7	5	Median	1.6321	1.4195	NaN	1	1	Median	2.7458	3.4117	NaN	1	1	Median	1.2029	1.2023	28.588	3	2	Plateau	2.0661	2.2199	58.22	2	1	Median	358920000	133100000	225820000	33789000	18639000	15150000	98798000	25743000	73055000	108300000	51153000	57145000	118040000	37567000	80471000	50355	1667	47403	304504;304505;304506;304507;304508;304509;304510;304511;304512	409429;409430;409431;409432;409433;409434;409435;409436;409437;409438;409439	409430			11	
TICSHVQNMIK	1	Unmodified	1329.6533	0.65332609	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.61	5.49		5	13						5	6	7	6	4	33.994	31.233	2;3	9.2136E-30	26362	160511_QHF_FH_JSI10i_3	191.4	149.95			0.90053	1.0412	51.611	21	7	Median	0.67673	0.58535	69.542	5	5	Median	0.87801	1.0435	41.427	6	2	Median	0.86069	0.83598	56.229	6	0	Median	1.1299	0.99274	21.498	4	0	Linear	6149800000	2542900000	3606900000	598120000	353070000	245050000	1359900000	747610000	612300000	2312300000	786650000	1525600000	1879500000	655580000	1223900000	50356	1398	47404	304513;304514;304515;304516;304517;304518;304519;304520;304521;304522;304523;304524;304525;304526;304527;304528;304529;304530;304531;304532;304533;304534;304535	409440;409441;409442;409443;409444;409445;409446;409447;409448;409449;409450;409451;409452;409453;409454;409455;409456;409457;409458;409459;409460;409461;409462;409463;409464;409465;409466;409467;409468;409469;409470;409471;409472;409473	409448			34	
TICSHVQNMIK	1	Oxidation (M)	1345.6482	0.64824072	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	18.021	17.81	2;3	0.00021476	14574	160511_QHF_FH_JSI10i_3	68.536	43.683			1.27	1.3742	39.728	5	1	Median	NaN	NaN	NaN	0	0	Median	1.27	1.4649	NaN	1	0	Median	0.85409	0.80179	50.017	2	1	Median	1.3601	1.3775	0.34333	2	0	Median	572720000	268670000	304050000	0	0	0	67991000	29565000	38425000	214870000	114440000	100430000	289850000	124670000	165190000	50357	1398	47404	304536;304537;304538;304539;304540	409474;409475;409476;409477	409476		1046	4	
TIDDLEDELYAQK	1	Unmodified	1551.7304	0.73043325	858	P06753	TPM3	Tropomyosin alpha-3 chain	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				65.384	64.354	2	0.001128	57203	160511_QHF_FH_JSI9i_1	62.694	46.062			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50358	858	47405	304541	409478	409478			1	
TIDDLEDEVYAQK	1	Unmodified	1537.7148	0.71478318	73;886	CON__Q3SX28;P07951	TPM2	Tropomyosin beta chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.719	56.064	2	5.337E-22	50646	160511_QHF_FH_JSI10i_1	172.27	149.63		+	1.2414	1.1245	27.121	4	1	Median	1.366	1.1547	NaN	1	0	Median	1.5189	1.7796	NaN	1	0	Median	1.1282	1.095	NaN	1	0	Median	0.91691	0.94766	NaN	1	1	Median	389040000	186490000	202560000	64717000	29590000	35127000	147050000	66080000	80971000	81767000	37747000	44019000	95510000	53070000	42440000	50359	73;886	47406	304542;304543;304544;304545	409479;409480;409481;409482;409483;409484;409485	409482			7	
TIDDLEEK	1	Unmodified	961.46041	0.4604064	2069	P67936	TPM4	Tropomyosin alpha-4 chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				2	3	1	3	25.407	22.834	2	1.2803E-06	13400	160513_QHF_FH_JSI12Kac_3	133.86	62.52			0.59064	0.67144	72.641	8	5	Median	1.2146	0.99853	118.68	2	2	Median	0.57113	0.67144	19.302	2	1	Median	1.0929	1.0443	NaN	1	0	Median	0.384	0.40821	99.126	3	2	Median	5863300000	3001500000	2861800000	1510900000	660730000	850130000	1211800000	701710000	510100000	1025800000	491860000	533970000	2114800000	1147200000	967650000	50360	2069	47407	304546;304547;304548;304549;304550;304551;304552;304553;304554	409486;409487;409488;409489;409490;409491;409492;409493;409494;409495;409496	409494			11	
TIDDRIVHELNTTVPTASFAGK	1	Unmodified	2384.2336	0.23358835	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.912	75.628	3	1.0996E-05	65667	160511_QHF_FH_JSI12i_3	77.045	61.955			3.5601	3.8137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5601	3.8137	NaN	1	1	Median	19190000	4327800	14862000	0	0	0	0	0	0	0	0	0	19190000	4327800	14862000	50361	2842	47408	304555	409497	409497			1	
TIDEAYPSMPVGITGWR	0	Unmodified	1891.9138	0.91383411	1584	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.184	86.404	2	4.3139E-06	76104	160511_QHF_FH_JSI11i_2	110.08	93.699			1.1757	1.2406	13.265	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3849	1.3626	NaN	1	0	Median	0.99808	1.1295	NaN	1	0	Median	28742000	12359000	16383000	0	0	0	0	0	0	18073000	7133300	10940000	10669000	5226200	5442900	50362	1584	47409	304556;304557	409498;409499;409500;409501	409501			4	
TIDEFVFNIPPGPTDLVSVTCPK	1	Unmodified	2545.2774	0.277427	5821				yes	yes	0	0	0	0			By MS/MS		2	0		1										1		89.084	88.545	4	0.0532	77780	160511_QHF_FH_JSI11i_2	13.057	0.97736	+		1.2503	1.2506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2503	1.2506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45653000	20088000	25565000	0	0	0	0	0	0	45653000	20088000	25565000	0	0	0	50363	5821	47410	304558	409502	409502			1	
TIDEGDADEVTK	1	Unmodified	1291.578	0.57795535	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.077	25.499	2	2.0789E-05	22681	160511_QHF_FH_JSI12i_1	90.05	52.323			0.33498	0.39531	65.491	3	2	Plateau	0.43919	0.3576	NaN	1	1	Median	0.33498	0.39531	NaN	1	0	Median	1.2345	1.1651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	248680000	173330000	75351000	48264000	34219000	14046000	134070000	101540000	32522000	66349000	37566000	28783000	0	0	0	50364	3239	47411	304559;304560;304561;304562	409503;409504;409505;409506;409507	409504			5	
TIDEVVEK	1	Unmodified	931.48623	0.48622722	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	24.564	24.087	2	0.0033989	20665	160511_QHF_FH_JSI9i_1	78.516	34.399			2.19	2.0841	48.359	5	5	Median	2.6705	2.1952	NaN	1	1	Median	2.7287	3.2584	NaN	1	1	Median	1.4002	1.3481	61.61	2	2	Median	1.6398	1.7127	NaN	1	1	Median	290170000	118300000	171870000	47073000	15983000	31090000	54765000	16506000	38259000	125190000	56733000	68458000	63141000	29081000	34060000	50365	2900	47412	304563;304564;304565;304566;304567	409508;409509;409510;409511;409512	409512			5	
TIDGILLLIER	0	Unmodified	1254.7547	0.75473792	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.81		4	2						5	3	2	3	3	98.007	94.624	2	9.5965E-19	87228	160511_QHF_FH_JSI12i_2	167.67	155.63			1.0142	1.1541	28.456	10	5	Plateau	1.3415	1.1541	2.2555	2	2	Median	0.93784	1.1351	8.0183	2	0	Median	1.1033	1.0573	35.127	3	2	Plateau	1.0796	1.159	41.842	3	1	Plateau	2392700000	1138100000	1254600000	430450000	180700000	249750000	601940000	338300000	263640000	785620000	366090000	419520000	574650000	252990000	321660000	50366	2456;2457	47413	304568;304569;304570;304571;304572;304573;304574;304575;304576;304577;304578	409513;409514;409515;409516;409517;409518;409519;409520;409521;409522;409523;409524;409525;409526	409514			14	
TIDGQQTIIACIESHQFQPK	1	Unmodified	2313.1423	0.1423305	1788	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	80.317	79.772	3	4.3851E-44	71164	160511_QHF_FH_JSI11i_3	210.17	198.11			0.88948	1.0856	33.461	5	1	Median	NaN	NaN	NaN	0	0	Median	0.88948	1.0856	NaN	1	0	Median	0.75392	0.7277	10.523	2	1	Median	1.3151	1.4032	3.8687	2	0	Median	906130000	426470000	479650000	0	0	0	124180000	71398000	52786000	330430000	173640000	156800000	451510000	181440000	270070000	50367	1788	47414	304579;304580;304581;304582;304583;304584	409527;409528;409529;409530;409531;409532;409533;409534;409535;409536	409528			10	
TIDLGAAAHYTGDK	1	Unmodified	1431.6994	0.69940789	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	2	3	2	47.39	46.531	2;3	3.0865E-07	40994	160511_QHF_FH_JSI10i_2	123.72	107.96			0.93305	1.0218	26.056	9	5	Median	0.86401	0.75914	41.498	2	1	Median	0.77634	0.91284	21.828	2	1	Median	1.0502	1.0539	32.239	3	2	Median	0.95458	1.0549	4.508	2	1	Median	1003200000	467240000	536000000	149450000	68399000	81055000	234040000	117770000	116280000	430230000	185850000	244380000	189510000	95222000	94289000	50368	2558	47415	304585;304586;304587;304588;304589;304590;304591;304592;304593	409537;409538;409539;409540;409541;409542;409543;409544;409545;409546;409547;409548;409549;409550;409551	409551			15	
TIDNADSSTLHAVTFLR	0	Unmodified	1859.9377	0.93774068	3656	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.76	6.55		7	3					3	4	3	5	6	3	69.257	64.703	2;3	3.0719E-40	57897	160511_QHF_FH_JSI11i_3	158.81	98.381			1.0931	1.1795	18.431	16	1	Median	1.4653	1.2252	8.349	3	0	Median	0.96968	1.1935	13.314	5	1	Median	1.0841	1.0732	19.692	5	0	Median	1.2593	1.2925	33.711	3	0	Median	1978000000	888120000	1089900000	250340000	88782000	161560000	418390000	215200000	203190000	765430000	339800000	425620000	543870000	244340000	299540000	50369	3656	47416	304594;304595;304596;304597;304598;304599;304600;304601;304602;304603;304604;304605;304606;304607;304608;304609;304610	409552;409553;409554;409555;409556;409557;409558;409559;409560;409561;409562;409563;409564;409565;409566;409567;409568;409569;409570;409571;409572;409573;409574;409575;409576	409554			25	
TIDPELLGK	1	Unmodified	984.54916	0.54916182	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	53.372	52.631	2	0.00030202	46158	160511_QHF_FH_JSI9i_2	83.265	58.342			1.1076	1.0924	23.426	5	0	Median	0.98656	0.83494	26.64	2	0	Median	1.0816	1.2877	NaN	1	0	Median	1.1076	1.0924	NaN	1	0	Median	1.112	1.1236	NaN	1	0	Median	763730000	387810000	375910000	205880000	97137000	108740000	181680000	108310000	73366000	195400000	100600000	94795000	180780000	81764000	99011000	50370	1081	47417	304611;304612;304613;304614;304615	409577;409578;409579;409580;409581	409581			5	
TIDPQEPPWVEVLVEILLALLAQPSHLMR	0	Oxidation (M)	3322.7999	0.79992056	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			106.4	100.68	3	7.5051E-10	59737	160513_QHF_FH_JSI10Kac_6	112.9	97.017			0.76964	0.88631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76964	0.88631	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	188880000	129640000	59234000	0	0	0	188880000	129640000	59234000	0	0	0	0	0	0	50371	4361	47418	304616	409582	409582		2460	1	
TIDPQEPPWVEVLVEILLALLAQPSHLMR	0	Unmodified	3306.805	0.80500594	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			106.71	100.99	3;4	4.0396E-36	59835	160513_QHF_FH_JSI10Kac_6	199.2	182.58			0.93212	1.1182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93212	1.1182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	646560000	448790000	197770000	0	0	0	646560000	448790000	197770000	0	0	0	0	0	0	50372	4361	47418	304617;304618	409583;409584	409583			1	
TIDQIHK	1	Unmodified	853.46577	0.46576654	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	2	2	2	10.854	10.405	2;3	0.00077915	8246	160511_QHF_FH_JSI10i_2	100.19	62.63			1.4104	1.454	18.731	8	1	Median	1.8182	1.5618	3.1311	2	0	Median	1.2687	1.5337	46.088	2	1	Median	1.3611	1.3563	6.0991	2	0	Median	1.2812	1.4333	5.7673	2	0	Median	2498100000	1128500000	1369600000	620400000	211000000	409410000	505110000	262420000	242690000	717830000	370090000	347730000	654800000	285010000	369790000	50373	2217	47419	304619;304620;304621;304622;304623;304624;304625;304626	409585;409586;409587;409588;409589	409589			5	
TIDVFDGNSGK	1	Unmodified	1151.5459	0.54586736	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		42.408	42.021	2	0.0008815	37959	160511_QHF_FH_JSI11i_1	78.655	62.993			1.9517	2.1002	13.601	2	2	Median	NaN	NaN	NaN	0	0	Median	1.6144	1.9076	NaN	1	1	Median	2.3594	2.3122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252630000	68646000	183980000	0	0	0	112800000	38122000	74681000	139830000	30524000	109300000	0	0	0	50374	3826	47420	304627;304628	409590;409591	409590			2	
TIDWVAFAEIIPQNQK	1	Unmodified	1871.9781	0.97814893	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	94.63	86.536	2;3	3.2237E-85	50795	160513_QHF_FH_JSI10Kac_6	267.02	229.59			0.94951	0.9511	9.5308	9	2	Median	1.1239	0.9621	6.7872	2	0	Median	0.69741	0.82822	4.2681	3	2	Median	1.0512	0.99771	1.7963	2	0	Median	0.92282	0.98305	4.6725	2	0	Median	2010500000	1023300000	987200000	424150000	196530000	227620000	790890000	434720000	356170000	308690000	138870000	169820000	486760000	253180000	233580000	50375	589	47421	304629;304630;304631;304632;304633;304634;304635;304636;304637	409592;409593;409594;409595;409596;409597;409598;409599;409600;409601	409601			10	
TIDYNPSVIK	1	Unmodified	1148.6077	0.60773933	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.334	46.675	2	0.0064388	42442	160511_QHF_FH_JSI12i_1	52.725	26.341			1.0023	1.0379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0023	1.0379	NaN	1	0	Median	58713000	29950000	28763000	0	0	0	0	0	0	0	0	0	58713000	29950000	28763000	50376	4591	47422	304638	409602	409602			1	
TIEAEAAHGTVTR	0	Unmodified	1354.6841	0.68409218	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	3	4	16.505	15.92	2;3	1.1599E-07	13421	160511_QHF_FH_JSI10i_2	134.61	120.17			0.93618	1.0978	15.455	11	2	Median	1.2729	1.0773	10.618	2	0	Median	0.93176	1.1433	0.22329	2	0	Median	0.93328	0.94353	19.962	3	0	Median	0.92264	1.0298	20.451	4	2	Median	1085800000	566490000	519270000	179880000	92072000	87809000	226570000	114910000	111660000	352570000	189210000	163360000	326750000	170300000	156450000	50377	1635	47423	304639;304640;304641;304642;304643;304644;304645;304646;304647;304648;304649	409603;409604;409605;409606;409607;409608;409609;409610;409611;409612;409613;409614;409615;409616;409617;409618;409619	409617			17	
TIEAHSR	0	Unmodified	812.41407	0.41406533	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	2	0		4								1	1	1	1	4.3424	3.9513	2	0.039872	2028	160511_QHF_FH_JSI9i_2	47.443	14.086			0.85068	0.89593	5.3285	4	0	Median	0.96868	0.82731	NaN	1	0	Median	0.76707	0.91985	NaN	1	0	Median	0.85084	0.87263	NaN	1	0	Median	0.85052	0.92838	NaN	1	0	Median	372110000	221970000	150140000	151650000	81693000	69959000	118820000	83928000	34895000	21251000	10667000	10584000	80382000	45682000	34700000	50378	2739	47424	304650;304651;304652;304653	409620	409620			1	
TIECISLIGLAVGK	1	Unmodified	1472.8273	0.82725094	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3		2	3	3	94.012	91.616	2;3	6.4116E-31	44223	160513_QHF_FH_JSI11Kac_6	166.14	129.62			0.85108	0.82947	40.685	7	2	Median	NaN	NaN	NaN	0	0	Median	0.52388	0.5767	6.3952	2	1	Median	0.69169	0.65917	32.499	2	1	Median	1.1927	1.3303	5.258	3	0	Plateau	140090000	88202000	51886000	0	0	0	35090000	25074000	10016000	69881000	47871000	22010000	35117000	15257000	19861000	50379	127	47425	304654;304655;304656;304657;304658;304659;304660;304661	409621;409622;409623;409624;409625;409626;409627	409624			7	
TIEDDLVSALVR	0	Unmodified	1329.714	0.71399532	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.25	0.433	3	1								1	3			82.773	82.321	2	0.00075718	74703	160511_QHF_FH_JSI10i_1	78.488	49.761			0.76371	0.89535	7.472	4	3	Median	1.1246	0.91816	NaN	1	0	Median	0.73001	0.87311	8.5917	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107120000	63085000	44038000	14839000	6979400	7859400	92285000	56106000	36179000	0	0	0	0	0	0	50380	5694	47426	304662;304663;304664;304665	409628;409629;409630;409631	409629			4	
TIEDLDENQLK	1	Unmodified	1316.646	0.64597533	4800	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	43.314	42.842	2	0.00030372	38390	160511_QHF_FH_JSI10i_1	76.282	1.085			0.75965	0.8872	24.169	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75965	0.8872	NaN	1	0	Median	1.3384	1.3112	NaN	1	1	Median	0.79998	0.84289	NaN	1	0	Median	450700000	248820000	201880000	0	0	0	169990000	110420000	59569000	140100000	67181000	72924000	140610000	71222000	69384000	50381	4800	47427	304666;304667;304668	409632;409633;409634	409634			3	
TIEEIISFQHLK	1	Unmodified	1456.7926	0.79257999	3219	Q7L1W4	LRRC8D	Volume-regulated anion channel subunit LRRC8D	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.436	68.837	3	0.023231	60241	160511_QHF_FH_JSI11i_2	35.204	24.736			0.91134	0.93279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91134	0.93279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21096000	9254100	11842000	0	0	0	0	0	0	21096000	9254100	11842000	0	0	0	50382	3219	47428	304669	409635	409635			1	
TIEELQNK	1	Unmodified	973.50803	0.50802529	65	Q04695;CON__Q04695	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	4.03	6	2					1			2	2	3	2	21.443	20.061	2	2.4151E-06	17507	160511_QHF_FH_JSI12i_1	148.38	56.476		+	0.64794	0.73187	58.356	9	6	Median	0.68141	0.56848	35.73	2	1	Median	0.58214	0.7143	13.897	2	1	Median	0.87195	0.84944	80.905	3	2	Median	0.98118	1.0517	91.249	2	2	Median	1959400000	1005700000	953680000	323910000	190000000	133910000	315120000	193000000	122120000	573490000	286610000	286890000	746880000	336120000	410760000	50383	65	47429	304670;304671;304672;304673;304674;304675;304676;304677;304678	409636;409637;409638;409639;409640;409641;409642;409643;409644;409645;409646	409639			11	
TIEESEETLK	1	Unmodified	1177.5714	0.57141341	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	2	2	1	28.937	24.361	2	1.0492E-07	14617	160513_QHF_FH_JSI11Kac_3	118.18	66.182			1.8083	1.7807	38.312	6	4	Median	1.6177	1.3203	NaN	1	0	Median	1.4794	1.6914	69.457	2	1	Median	1.8926	1.865	34.132	2	2	Median	2.0212	2.1643	NaN	1	1	Median	644610000	295530000	349090000	223430000	86861000	136570000	205980000	119680000	86299000	210760000	87200000	123560000	4440700	1783100	2657600	50384	679	47430	304679;304680;304681;304682;304683;304684	409647;409648;409649;409650;409651;409652;409653;409654	409648			8	
TIEEYAVCPDLK	1	Unmodified	1436.6857	0.68573166	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	55.832	55.342	2	2.5957E-05	50215	160511_QHF_FH_JSI12i_1	133.89	120.54			1.2708	1.4997	21.483	3	3	Median	NaN	NaN	NaN	0	0	Median	1.2708	1.4997	NaN	1	1	Median	1.0672	1.047	NaN	1	1	Median	1.4458	1.5365	NaN	1	1	Median	694810000	329410000	365410000	0	0	0	192570000	88263000	104300000	250680000	123440000	127240000	251570000	117700000	133870000	50385	1460	47431	304685;304686;304687	409655;409656;409657	409656			3	
TIEGITVTVHMPK	1	Oxidation (M)	1440.7647	0.76465068	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	15.7	0.471								1	2	2			1	54.373	44.85	3	0.00064564	24140	160513_QHF_FH_JSI9Kac_5	75.479	51.224			1.1607	1.1044	10.379	2	2	Median	1.2207	1.0263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1037	1.1885	NaN	1	1	Median	21349000	9730900	11618000	14792000	6484400	8307700	0	0	0	0	0	0	6557100	3246400	3310600	50386	5535	47432	304688;304689;304690	409658;409659;409660	409658		2690	3	
TIEGSSPADNR	0	Unmodified	1145.5313	0.53127993	5483	Q9Y217	MTMR6	Myotubularin-related protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12	0.756				2	3	2					2	3	2	55.838	46.431	2	0.030267	19132	160513_QHF_FH_JSI11Kac_2	43.808	25.772			0.91982	0.97769	9.1228	7	0	Median	NaN	NaN	NaN	0	0	Median	0.79739	0.87464	15.752	2	0	Median	1.0007	0.99141	5.8448	3	0	Median	0.93729	0.95982	4.6642	2	0	Median	1149000000	571260000	577700000	0	0	0	351710000	176550000	175160000	321100000	160770000	160330000	476140000	233930000	242210000	50387	5483	47433	304691;304692;304693;304694;304695;304696;304697	409661;409662;409663;409664;409665;409666;409667	409661			7	
TIEIQATNALDEK	1	Unmodified	1444.7409	0.74093835	4912	Q9NQ48	LZTFL1	Leucine zipper transcription factor-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	53.896	53.403	2	3.1402E-05	48130	160511_QHF_FH_JSI10i_1	117.86	69.769			0.74516	0.73327	44.558	3	1	Median	NaN	NaN	NaN	0	0	Median	0.42137	0.47377	NaN	1	0	Median	0.74516	0.73327	NaN	1	1	Median	1.0846	1.155	NaN	1	0	Median	80981000	44490000	36492000	0	0	0	30245000	16027000	14218000	27299000	16416000	10883000	23437000	12047000	11391000	50388	4912	47434	304698;304699;304700	409668;409669;409670;409671	409671			3	
TIEKFEK	2	Acetyl (K)	935.4964	0.49639797	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	0.831						3	3	4		1	2	3	4	41.035	31.395	2	0.0043174	17772	160513_QHF_FH_JSI11Kac_5	99.802	43.791			0.7295	0.79384	77.124	8	2	Median	NaN	NaN	NaN	0	0	Median	0.8435	0.96909	10.473	2	0	Median	0.3444	0.34102	91.35	3	1	Plateau	0.64771	0.67945	94.091	3	1	Plateau	1212000000	728840000	483110000	5728200	5728200	0	422660000	200590000	222070000	430990000	306430000	124560000	352580000	216090000	136490000	50389	2072;2231	47435	304701;304702;304703;304704;304705;304706;304707;304708;304709;304710	409672;409673;409674;409675;409676;409677;409678;409679;409680;409681;409682	409680	2148;2156		11	
TIEKFEK	2	Unmodified	893.48583	0.48583328	2072;2231	P68104;Q5VTE0;Q05639	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	no	no	0	0	0	1				By MS/MS	3	0			1										1	14.201	14.274	3	0.020453	11075	160511_QHF_FH_JSI12i_3	43.246	25.861			0.16687	0.16903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16687	0.16903	NaN	1	0	Median	748820000	638290000	110530000	0	0	0	0	0	0	0	0	0	748820000	638290000	110530000	50390	2072;2231	47435	304711	409683	409683			1	
TIELDGK	1	Unmodified	774.41233	0.41233399	2020;4642;1927;3909	Q9H0U4;P61006;P62820;Q92930	RAB1B;RAB8A;RAB1A;RAB8B	Ras-related protein Rab-1B;Ras-related protein Rab-8A;Ras-related protein Rab-1A;Ras-related protein Rab-8B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.98	4	2				2	2			2	3	2	3	27.11	23.191	2	0.00078407	20547	160511_QHF_FH_JSI12i_1	128.57	51.72			0.95933	0.98213	41.092	10	1	Median	0.74982	0.61882	33.119	2	0	Median	0.40278	0.47904	39.101	3	1	Plateau	1.2987	1.2748	43.016	2	0	Median	1.0558	1.1284	7.8589	3	0	Median	4868200000	2571700000	2296600000	1136600000	509160000	627430000	928820000	512410000	416410000	1323300000	747690000	575580000	1479600000	802440000	677130000	50391	4642;1927;2020;3909	47436	304712;304713;304714;304715;304716;304717;304718;304719;304720;304721	409684;409685;409686;409687;409688;409689;409690;409691;409692;409693;409694	409685			11	
TIENKQDAVDYLTWTFLYR	1	Unmodified	2375.1798	0.17976186	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	91.594	83.248	3	4.4502E-16	44631	160513_QHF_FH_JSI12Kac_6	181.14	157.09			0.8815	0.93756	3.618	4	3	Median	1.0664	0.91367	NaN	1	1	Median	0.80395	0.96679	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8815	0.93047	4.722	2	2	Median	443120000	232920000	210200000	88444000	41586000	46858000	145010000	88839000	56171000	0	0	0	209670000	102490000	107170000	50392	552	47437	304722;304723;304724;304725	409695;409696;409697;409698;409699	409696			5	
TIEQNINNLNVSEADRK	1	Unmodified	1956.9865	0.98648179	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							1	2	3	4	41.938	41.336	3	1.2413E-11	35195	160511_QHF_FH_JSI12i_3	110.37	85.199			1.1379	1.0891	12.212	8	0	Median	1.162	0.98498	NaN	1	0	Median	0.81218	0.97722	7.4586	2	0	Median	1.3168	1.2431	1.2306	3	0	Median	1.0056	1.0691	10.501	2	0	Median	1163300000	620110000	543150000	162550000	70277000	92274000	277920000	160560000	117370000	402290000	210010000	192280000	320490000	179270000	141230000	50393	2594	47438	304726;304727;304728;304729;304730;304731;304732;304733;304734;304735	409700;409701;409702;409703;409704;409705;409706;409707;409708;409709;409710;409711;409712;409713;409714;409715	409714			16	
TIESANQQTDK	1	Unmodified	1233.5837	0.58370943	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	3	1	1	9.2214	7.463	2	2.3278E-14	5924	160511_QHF_FH_JSI9i_1	155	118.45			0.85514	0.84417	22.86	5	1	Median	1.4926	1.2252	NaN	1	0	Median	0.76474	0.86846	29.7	2	1	Median	0.85514	0.84417	NaN	1	0	Median	0.73188	0.78342	NaN	1	0	Median	1130500000	542230000	588290000	314360000	126230000	188130000	313840000	159510000	154330000	227190000	108660000	118530000	275130000	147830000	127300000	50394	602	47439	304736;304737;304738;304739;304740;304741	409716;409717;409718;409719;409720;409721	409720			6	
TIESETVR	0	Unmodified	933.47673	0.47672516	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1.4	0.49	3	2									2	1	2	13.067	12.634	2	0.0066274	10454	160511_QHF_FH_JSI12i_1	61.999	17.552			0.86774	0.77962	21.497	5	0	Linear	NaN	NaN	NaN	0	0	Median	0.84765	1.0204	40.369	2	0	Median	0.88402	0.8749	NaN	1	0	Median	0.84643	0.90312	0.84969	2	0	Median	655260000	356960000	298300000	0	0	0	250030000	142580000	107450000	201650000	103810000	97841000	203580000	110570000	93009000	50395	346	47440	304742;304743;304744;304745;304746	409722;409723	409723			2	
TIESILEPVAQQISHLVIMHEEGEVDGK	1	Unmodified	3100.5751	0.57506558	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	102.01	102.02	4	1.5358E-49	91087	160511_QHF_FH_JSI11i_3	184.4	175.78			1.0165	1.0022	13.738	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96935	0.90942	NaN	1	0	Median	1.066	1.1044	NaN	1	0	Median	685110000	336010000	349110000	0	0	0	0	0	0	226470000	114620000	111850000	458640000	221390000	237250000	50396	1139	47441	304747;304748	409724;409725;409726	409724			3	
TIETSPSLSR	0	Unmodified	1089.5666	0.5666028	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								2		1		27.742	27.043	2	0.00081214	23318	160511_QHF_FH_JSI9i_2	76.679	44.324			1.0626	0.97882	34.841	2	2	Median	0.90351	0.76508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2497	1.2523	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58776000	26906000	31870000	24938000	12519000	12419000	0	0	0	33838000	14387000	19451000	0	0	0	50397	5034	47442	304749;304750;304751	409727;409728;409729	409728			3	
TIEYLQPNPASR	0	Unmodified	1387.7096	0.70957864	4331;4332	Q99961;Q99962	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	4	4					4			2	3	3	4	47.355	44.545	2	2.0219E-31	38537	160511_QHF_FH_JSI11i_2	221.52	193.12			1.0002	1.0479	20.456	10	3	Median	1.4329	1.1984	18.827	2	1	Median	0.94727	1.1397	12.043	2	1	Median	1.1367	1.1089	10.807	3	0	Median	0.71501	0.76966	15.367	3	1	Median	913230000	472680000	440560000	167150000	72221000	94932000	236770000	132780000	103990000	279190000	136120000	143080000	230120000	131560000	98555000	50398	4331;4332	47443	304752;304753;304754;304755;304756;304757;304758;304759;304760;304761;304762;304763	409730;409731;409732;409733;409734;409735;409736;409737;409738;409739;409740;409741;409742;409743;409744;409745;409746;409747;409748;409749	409745			19	
TIFAKVDR	1	Acetyl (K)	990.54983	0.54983053	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		53.051	42.809	2	0.0078251	23764	160513_QHF_FH_JSI11Kac_5	78.516	24.359			0.21505	0.21271	69.556	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21505	0.21271	69.556	2	1	Median	NaN	NaN	NaN	0	0	Median	34297000	28005000	6291900	0	0	0	0	0	0	34297000	28005000	6291900	0	0	0	50399	110	47444	304764;304765	409750;409751	409751	71		2	
TIFAYFTGSK	1	Unmodified	1133.5757	0.57571092	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.25		3	4				2	4	4	4	5	5	3	73.117	67.07	2	3.082E-15	55819	160511_QHF_FH_JSI9i_3	168.8	110.84			0.95642	0.94088	12.446	17	0	Median	1.0911	0.93509	9.0919	4	0	Median	0.79235	0.92301	12.649	5	0	Median	1.0235	0.96968	7.0238	5	0	Median	0.95808	0.97402	16.234	3	0	Plateau	22965000000	11001000000	11964000000	5252300000	2245500000	3006800000	5757600000	2854300000	2903300000	6239700000	3266900000	2972700000	5715200000	2634400000	3080700000	50400	4367	47445	304766;304767;304768;304769;304770;304771;304772;304773;304774;304775;304776;304777;304778;304779;304780;304781;304782	409752;409753;409754;409755;409756;409757;409758;409759;409760;409761;409762;409763;409764;409765;409766;409767;409768;409769;409770;409771;409772;409773;409774;409775;409776;409777;409778;409779;409780;409781;409782;409783;409784;409785;409786;409787;409788;409789;409790;409791;409792;409793;409794;409795;409796	409769			45	
TIFGNLNPVWEEK	1	Unmodified	1545.7827	0.78274359	206	O14795	UNC13B	Protein unc-13 homolog B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		81.83	81.83	2	5.575E-07	73107	160511_QHF_FH_JSI11i_3	93.623	64.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50401	206	47446	304783	409797	409797			1	
TIFGSIPDIFDVHTK	1	Unmodified	1688.8774	0.87737225	4789	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							3	1	1	1	99.099	98.992	3	1.7192E-10	87814	160511_QHF_FH_JSI11i_3	148.52	138.35			1.1086	1.1309	26.979	4	0	Median	2.1528	1.8512	NaN	1	0	Median	1.0063	1.1271	NaN	1	0	Median	1.0839	1.0131	NaN	1	0	Median	1.134	1.1347	NaN	1	0	Median	165230000	84638000	80589000	6610100	2439800	4170300	21623000	7860400	13763000	45252000	22447000	22805000	91741000	51891000	39850000	50402	4789	47447	304784;304785;304786;304787;304788;304789	409798;409799;409800;409801;409802;409803;409804;409805	409799			8	
TIFIISMYK	1	Oxidation (M)	1130.6046	0.60456821	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.9						1	1	5	4	3	3	2	3	72.067	61.648	2	0.00010037	34657	160513_QHF_FH_JSI9Kac_5	108.74	91.357			1.0237	1.0072	72.207	11	1	Median	1.0884	0.91597	21.862	3	0	Median	0.85536	1.0072	1.4288	3	1	Median	1.0558	1.0314	1.8448	2	0	Median	1.068	1.114	132.72	3	0	Median	3192900000	1652000000	1541000000	946290000	462250000	484040000	946160000	523190000	422980000	581180000	275080000	306110000	719290000	391450000	327840000	50403	2490	47448	304790;304791;304792;304793;304794;304795;304796;304797;304798;304799;304800	409806;409807;409808;409809;409810;409811;409812;409813;409814;409815;409816;409817;409818	409807		1975	13	
TIFIISMYK	1	Unmodified	1114.6097	0.60965359	2490	Q14116	IL18	Interleukin-18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	2	2	2	1	84.23	75.038	2	2.5439E-07	42432	160513_QHF_FH_JSI10Kac_6	140.5	102.41			1.0179	1.001	9.8522	7	0	Median	0.9781	0.84324	3.1095	2	0	Median	0.85548	0.99863	0.78795	2	0	Median	1.048	1.0107	1.3767	2	0	Median	1.0416	1.0863	NaN	1	0	Median	10409000000	4896600000	5512700000	2341000000	1011100000	1329900000	3680800000	1817700000	1863000000	2770000000	1435100000	1334900000	1617500000	632670000	984820000	50404	2490	47448	304801;304802;304803;304804;304805;304806;304807	409819;409820;409821;409822;409823;409824;409825;409826;409827;409828;409829;409830;409831;409832	409831			14	
TIFLLHR	0	Unmodified	898.53887	0.53887191	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	3	1	1	57.08	47.917	2;3	0.00033385	26299	160513_QHF_FH_JSI10Kac_6	96.51	72.311			1.6529	1.7038	51.774	6	5	Median	2.575	2.1879	0.90822	2	2	Median	0.61685	0.73985	22.298	2	2	Median	1.7187	1.6643	NaN	1	1	Median	1.5896	1.7443	NaN	1	0	Median	124860000	50823000	74036000	43747000	11670000	32077000	62912000	32221000	30691000	8852600	3361600	5490900	9348200	3570900	5777300	50405	4292	47449	304808;304809;304810;304811;304812;304813;304814	409833;409834;409835;409836;409837;409838;409839	409839			7	
TIFPHTAGSNK	1	Unmodified	1171.5986	0.59857163	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			7							2	2	2	1	18.697	18.037	2;3	4.1049E-06	14877	160511_QHF_FH_JSI10i_3	111.46	100.63			1.0769	1.0295	22.495	7	0	Median	1.5157	1.2149	3.4643	2	0	Median	0.7412	0.84835	10.413	2	0	Median	1.1047	1.0595	4.0615	2	0	Median	0.67596	0.66986	NaN	1	0	Median	960590000	470830000	489770000	294870000	132120000	162750000	222660000	111580000	111080000	290670000	142690000	147980000	152390000	84434000	67958000	50406	5310	47450	304815;304816;304817;304818;304819;304820;304821	409840;409841;409842;409843;409844;409845;409846;409847	409842			8	
TIFPLFMK	1	Unmodified	995.55141	0.55141043	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	91.429	90.93	2	0.00053307	74568	160511_QHF_FH_JSI9i_3	105.12	68.096			0.98307	1.0129	12.793	7	0	Median	1.114	0.92981	12.101	2	0	Median	0.80966	0.97055	16.401	2	0	Median	0.95739	0.93609	21.655	2	0	Median	0.99657	1.0388	NaN	1	0	Median	1341100000	694120000	647030000	246190000	119180000	127010000	236290000	122540000	113750000	334750000	166500000	168250000	523920000	285890000	238030000	50407	3817	47451	304822;304823;304824;304825;304826;304827;304828	409848;409849;409850;409851;409852;409853;409854;409855;409856;409857;409858;409859;409860;409861;409862;409863;409864;409865;409866	409857			19	
TIFQGIAAK	1	Unmodified	947.54402	0.54401687	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.32	3	3	4						4	3	4	3	4	47.658	44.397	2	2.8574E-06	39006	160511_QHF_FH_JSI11i_3	124.98	38.871			1.0907	1.0707	22.325	14	0	Median	1.4372	1.153	8.0441	3	0	Plateau	0.86301	1.17	8.8825	4	0	Linear	0.8439	0.79827	16.74	3	0	Plateau	1.2739	1.2973	36.015	4	0	Median	11013000000	4704800000	6308500000	1696800000	636670000	1060100000	2219000000	1079000000	1140000000	2638600000	1118200000	1520400000	4459000000	1870900000	2588000000	50408	1764	47452	304829;304830;304831;304832;304833;304834;304835;304836;304837;304838;304839;304840;304841;304842	409867;409868;409869;409870;409871;409872;409873;409874;409875;409876;409877;409878;409879	409868			13	
TIFSYFK	1	Unmodified	904.46945	0.46945494	5347	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	62.028	61.203	2	0.0072762	50329	160511_QHF_FH_JSI9i_3	88.029	9.4133			0.86989	0.78858	7.4351	4	0	Linear	1.1194	0.90424	NaN	1	0	Median	0.80862	0.98393	NaN	1	0	Median	0.91882	0.8502	NaN	1	0	Median	0.82357	0.83427	NaN	1	0	Median	464340000	215540000	248800000	83265000	38704000	44562000	82145000	36472000	45674000	88281000	47339000	40942000	210650000	93027000	117620000	50409	5347	47453	304843;304844;304845;304846	409880;409881;409882;409883	409882			4	
TIFTGHTAVVEDVSWHLLHESLFGSVADDQK	1	Unmodified	3437.6892	0.68918414	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			91.665	85.944	4;5	8.5079E-92	49078	160513_QHF_FH_JSI10Kac_6	208.86	193.43			0.64316	0.77291	2.5378	2	0	Median	NaN	NaN	NaN	0	0	Median	0.64316	0.77291	2.5378	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	451150000	291400000	159740000	0	0	0	451150000	291400000	159740000	0	0	0	0	0	0	50410	2283	47454	304847;304848	409884;409885;409886	409885			3	
TIGDLSTLTASEIK	1	Unmodified	1447.777	0.77698951	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	71.711	70.756	2	2.1592E-05	62471	160511_QHF_FH_JSI9i_2	83.182	57.523			0.96318	0.9986	39.551	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3059	1.3208	NaN	1	0	Median	0.71041	0.75497	NaN	1	0	Median	31952000	14535000	17417000	0	0	0	0	0	0	18975000	8356100	10619000	12978000	6179400	6798200	50411	2977	47455	304849;304850;304851	409887;409888;409889	409888			1	
TIGDMFQNQDR	0	Unmodified	1323.5877	0.58774895	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	42.973	42.301	2	1.3407E-13	36872	160511_QHF_FH_JSI9i_2	153.12	148.34			1.0727	1.0795	24.873	10	1	Median	1.8678	1.557	48.335	2	0	Median	0.82107	0.98856	8.5067	2	0	Median	1.069	1.073	10.869	3	0	Median	1.0458	1.1475	7.5538	3	1	Plateau	1350000000	642000000	707980000	192700000	86330000	106370000	319790000	176170000	143620000	452160000	205380000	246780000	385340000	174120000	211220000	50412	3973	47456	304852;304853;304854;304855;304856;304857;304858;304859;304860;304861	409890;409891;409892;409893;409894;409895;409896;409897;409898;409899;409900;409901;409902;409903;409904;409905;409906	409899			17	
TIGDMFQNQDRNQDGK	1	Unmodified	1865.8326	0.83262368	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		35.791	34.93	3	0.00010907	30368	160511_QHF_FH_JSI11i_3	83.54	75.415			0.83657	1.0476	22.16	4	1	Linear	0.98634	0.83948	NaN	1	0	Median	0.87364	1.0476	10.042	2	0	Median	1.4952	1.4134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	401950000	200090000	201860000	84178000	44995000	39183000	211380000	113640000	97741000	106390000	41458000	64934000	0	0	0	50413	3973	47457	304862;304863;304864;304865;304866;304867	409907;409908;409909;409910;409911;409912;409913;409914;409915;409916	409907			10	
TIGGDLVEK	1	Unmodified	930.50221	0.50221163	683	O95363	FARS2	Phenylalanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.761	32.376	2	0.0036617	29005	160511_QHF_FH_JSI11i_1	59.35	10.789			0.72091	0.748	10.61	3	0	Median	NaN	NaN	NaN	0	0	Median	0.55026	0.66588	NaN	1	0	Median	0.85028	0.82301	NaN	1	0	Median	0.72091	0.748	NaN	1	0	Median	210880000	123710000	87173000	0	0	0	81156000	50964000	30192000	78499000	43444000	35056000	51224000	29299000	21925000	50414	683	47458	304868;304869;304870	409917;409918;409919;409920	409918			4	
TIGGGDDSFNTFFSETGAGK	1	Unmodified	2006.8858	0.88576469	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.34	2.87	20	10	9				1	1		11	10	11	9	80.43	79.17	2;3	0	72590	160511_QHF_FH_JSI11i_1	494.52	485.82			1.0125	0.98151	19.195	32	4	Median	1.0576	0.92689	28.437	8	1	Plateau	0.83615	0.96014	16.638	7	1	Median	0.99249	0.98352	8.9874	9	1	Median	1.0016	1.0698	20.23	8	1	Median	47110000000	22110000000	25000000000	11159000000	4468000000	6690500000	11890000000	6713300000	5176300000	13816000000	6031600000	7784400000	10246000000	4896700000	5349100000	50415	2073;4359	47459	304871;304872;304873;304874;304875;304876;304877;304878;304879;304880;304881;304882;304883;304884;304885;304886;304887;304888;304889;304890;304891;304892;304893;304894;304895;304896;304897;304898;304899;304900;304901;304902;304903;304904;304905;304906;304907;304908;304909;304910;304911	409921;409922;409923;409924;409925;409926;409927;409928;409929;409930;409931;409932;409933;409934;409935;409936;409937;409938;409939;409940;409941;409942;409943;409944;409945;409946;409947;409948;409949;409950;409951;409952;409953;409954;409955;409956;409957;409958;409959;409960;409961;409962;409963;409964;409965;409966;409967;409968;409969;409970;409971;409972;409973;409974;409975;409976;409977;409978;409979;409980;409981;409982;409983;409984;409985;409986;409987;409988;409989;409990;409991;409992;409993;409994;409995;409996;409997;409998;409999;410000;410001;410002;410003;410004;410005;410006;410007;410008;410009;410010;410011;410012;410013;410014;410015;410016;410017;410018;410019;410020;410021;410022;410023;410024;410025;410026;410027;410028;410029;410030;410031;410032;410033;410034;410035;410036;410037;410038;410039;410040;410041;410042;410043;410044;410045;410046;410047;410048;410049;410050;410051;410052;410053	409936			132	
TIGGGDDSFNTFFSETGAGKHVPR	1	Acetyl (K)	2538.1775	0.17753003	2073;4359	P68363;Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	80.147	71.653	3;4	3.6243E-129	40183	160513_QHF_FH_JSI10Kac_6	251.02	233.43			1.0237	1.0538	40.087	5	0	Median	1.2387	1.0538	NaN	1	0	Median	1.0237	1.2171	NaN	1	0	Median	0.55993	0.53429	NaN	1	0	Median	1.1725	1.2476	33.391	2	0	Median	6107400000	3277600000	2829800000	675240000	318960000	356270000	2018900000	1000600000	1018300000	2783900000	1640300000	1143500000	629450000	317680000	311770000	50416	2073;4359	47460	304912;304913;304914;304915;304916	410054;410055;410056;410057;410058	410058	2161		4	
TIGGGDDSFTTFFCETGAGK	1	Unmodified	2066.8891	0.88913551	2074	P68366	TUBA4A	Tubulin alpha-4A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	86.04	85.584	2	7.0524E-100	77667	160511_QHF_FH_JSI10i_1	263.59	239.91			1.1462	1.2472	26.448	4	1	Median	1.7641	1.4336	NaN	1	1	Median	1.0247	1.1617	NaN	1	0	Median	0.80976	0.79313	NaN	1	0	Median	1.282	1.3389	NaN	1	0	Median	129020000	58498000	70520000	13626000	3171100	10455000	34636000	16773000	17862000	45245000	24970000	20275000	35511000	13584000	21927000	50417	2074	47461	304917;304918;304919;304920;304921;304922	410059;410060;410061;410062;410063;410064;410065;410066;410067;410068;410069	410065			11	
TIGISVDPR	0	Unmodified	956.5291	0.52909508	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.42	5	4	4				3	4	2	5	6	5	6	46.378	41.687	2	2.2576E-16	21221	160513_QHF_FH_JSI10Kac_5	163.77	129.98			0.98854	1.0452	14.45	22	2	Median	1.2994	1.069	19.679	5	1	Median	0.91402	1.0958	15.532	6	0	Median	0.98526	0.96097	12.762	5	0	Median	0.92515	1.025	11.083	6	1	Median	11165000000	5331000000	5834300000	1871200000	736570000	1134600000	2463500000	1287500000	1176000000	3768400000	1742900000	2025500000	3062200000	1564100000	1498100000	50418	1275	47462	304923;304924;304925;304926;304927;304928;304929;304930;304931;304932;304933;304934;304935;304936;304937;304938;304939;304940;304941;304942;304943;304944	410070;410071;410072;410073;410074;410075;410076;410077;410078;410079;410080;410081;410082;410083;410084;410085;410086;410087;410088;410089;410090;410091;410092;410093;410094;410095;410096;410097;410098;410099;410100;410101;410102;410103;410104;410105;410106;410107;410108;410109;410110;410111;410112	410108			43	
TIGNNGDQSHK	1	Unmodified	1169.5425	0.54251332	5565	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.86	0.639	2	4	1							1		3	3	4.7331	4.4707	2;3	1.5618E-05	2295	160511_QHF_FH_JSI11i_2	105.4	86.614			0.94233	0.90935	53.994	7	1	Median	0.94233	0.82047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8696	0.85437	43.319	3	0	Plateau	1.6963	1.7874	75.647	3	1	Plateau	328540000	150450000	178080000	42320000	21688000	20632000	0	0	0	124700000	57914000	66785000	161520000	70853000	90664000	50419	5565	47463	304945;304946;304947;304948;304949;304950;304951	410113;410114;410115;410116	410115			4	
TIGSGEPGVPTKK	2	Unmodified	1269.6929	0.69286595	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	20.402	20.404	3	0.048665	17119	160511_QHF_FH_JSI11i_3	20.783	18.804			1.156	1.152	44.549	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88384	0.84072	NaN	1	0	Median	1.5119	1.5786	NaN	1	0	Median	64801000	32203000	32598000	0	0	0	0	0	0	26706000	13752000	12953000	38096000	18451000	19645000	50420	2956	47464	304952;304953	410117	410117			1	
TIGTGLVTNTLAMTEEEK	1	Oxidation (M)	1922.9507	0.95067313	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	4.01	1	8	7					2		3	5	7	3	72.66	70.708	2;3	5.4485E-98	63783	160511_QHF_FH_JSI11i_3	254.1	246.49			1.0403	1.0307	23.802	14	4	Median	1.2284	1.0774	50.717	3	3	Median	0.86551	1.0633	20.268	3	0	Median	1.0403	0.97743	14.976	6	1	Median	0.9807	1.0605	13.39	2	0	Median	477430000	244870000	232550000	55720000	26525000	29195000	86814000	45343000	41472000	200830000	108690000	92138000	134060000	64316000	69749000	50421	1658	47465	304954;304955;304956;304957;304958;304959;304960;304961;304962;304963;304964;304965;304966;304967;304968;304969;304970;304971	410118;410119;410120;410121;410122;410123;410124;410125;410126;410127;410128;410129;410130;410131;410132;410133;410134;410135;410136;410137;410138;410139;410140;410141;410142;410143	410121		1342	26	
TIGTGLVTNTLAMTEEEK	1	Unmodified	1906.9558	0.95575851	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.05	0.824	7	7	8							4	6	7	5	81.563	80.986	2;3	1.0518E-236	72441	160511_QHF_FH_JSI11i_3	425.34	372.95			0.95465	0.97953	9.8981	20	4	Median	1.2055	0.99094	3.9033	3	0	Median	0.84761	1.0196	15.18	6	2	Median	0.97538	0.94767	9.9872	6	1	Median	0.92136	0.99077	4.7033	5	1	Median	5955500000	2980100000	2975400000	658740000	285550000	373190000	899410000	490090000	409320000	2511300000	1254900000	1256400000	1886100000	949590000	936520000	50422	1658	47465	304972;304973;304974;304975;304976;304977;304978;304979;304980;304981;304982;304983;304984;304985;304986;304987;304988;304989;304990;304991;304992;304993	410144;410145;410146;410147;410148;410149;410150;410151;410152;410153;410154;410155;410156;410157;410158;410159;410160;410161;410162;410163;410164;410165;410166;410167;410168;410169;410170;410171;410172;410173;410174;410175;410176;410177;410178;410179;410180;410181;410182;410183;410184;410185;410186;410187;410188;410189;410190	410147			47	
TIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGK	2	Unmodified	3512.7457	0.74571274	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		100.84	100.84	4	1.1081E-67	89819	160511_QHF_FH_JSI11i_3	190.25	175.32			0.93904	0.88065	4.253	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93904	0.88065	4.253	2	2	Median	NaN	NaN	NaN	0	0	Median	434440000	224820000	209620000	0	0	0	0	0	0	434440000	224820000	209620000	0	0	0	50423	1722	47466	304994;304995	410191;410192	410191			2	
TIGVAAK	1	Unmodified	658.40138	0.40137537	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		13.408	12.97	2	0.029275	10191	160511_QHF_FH_JSI11i_2	52.683	18.945			0.87362	0.82083	16.29	2	0	Median	0.8558	0.73152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8918	0.92103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	929040000	485520000	443520000	334540000	175910000	158630000	0	0	0	594500000	309610000	284890000	0	0	0	50424	3852	47467	304996;304997	410193;410194	410194			2	
TIGVDFLER	0	Unmodified	1048.5553	0.55530983	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.696	67.398	2	0.03509	58067	160511_QHF_FH_JSI12i_2	47.198	32.359			0.93719	1.0422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93719	1.0422	NaN	1	1	Median	46325000	25934000	20390000	0	0	0	0	0	0	0	0	0	46325000	25934000	20390000	50425	5394	47468	304998	410195	410195			1	
TIGVITK	1	Unmodified	730.45889	0.45889025	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6.37	2	2					2	1			2	3	2	30.744	26.284	2	0.012555	22055	160511_QHF_FH_JSI11i_2	69.198	31.552			1.0653	1.078	38.526	7	2	Median	NaN	NaN	NaN	0	0	Median	0.63559	0.74847	31.491	2	1	Median	1.0653	1.078	10.111	3	0	Plateau	0.84333	0.91762	72.29	2	1	Median	436520000	215430000	221090000	0	0	0	64260000	38179000	26081000	205180000	99390000	105790000	167080000	77861000	89223000	50426	1711	47469	304999;305000;305001;305002;305003;305004;305005	410196;410197;410198;410199;410200;410201	410200			6	
TIGVMTMVHGDNMGLVLPPR	0	Unmodified	2137.0846	0.084621387	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	3.88		4	6						1	3	4	1	3	88.683	87.381	3	1.5213E-57	72700	160511_QHF_FH_JSI9i_3	186.05	164.51			1.2658	1.2762	26.03	8	3	Median	1.5181	1.2909	0.15816	2	0	Median	1.0978	1.2631	25.616	3	2	Median	NaN	NaN	NaN	0	0	Median	0.92829	0.93478	32.677	3	1	Median	639300000	295990000	343310000	157710000	59860000	97849000	314820000	153190000	161630000	0	0	0	166770000	82945000	83828000	50427	878	47470	305006;305007;305008;305009;305010;305011;305012;305013;305014;305015;305016	410202;410203;410204;410205;410206;410207;410208;410209;410210;410211;410212;410213;410214;410215;410216;410217;410218;410219;410220;410221	410212			20	
TIGVMTMVHGDNMGLVLPPR	0	Oxidation (M)	2153.0795	0.07953601	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			8							4	4			79.438	78.066	3	6.5131E-07	63468	160511_QHF_FH_JSI9i_3	102.58	96.161			1.42	1.1968	12.417	5	1	Median	1.477	1.1968	2.5124	3	1	Median	0.96655	1.0797	21.892	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124580000	60342000	64243000	72311000	31518000	40793000	52274000	28824000	23450000	0	0	0	0	0	0	50428	878	47470	305017;305018;305019;305020;305021;305022;305023;305024	410222;410223;410224;410225;410226;410227;410228;410229;410230;410231;410232	410230		434;435;436	11	
TIGVMTMVHGDNMGLVLPPR	0	2 Oxidation (M)	2169.0745	0.074450632	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	2	0	By MS/MS				3	0			1							1				69.089	67.6	3	0.0062066	55597	160511_QHF_FH_JSI9i_3	38.417	31.429			1.1291	0.93344	NaN	1	0	Median	1.1291	0.93344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21153000	11673000	9480800	21153000	11673000	9480800	0	0	0	0	0	0	0	0	0	50429	878	47470	305025	410233	410233		434;435;436	1	
TIHAELSK	1	Unmodified	897.49198	0.4919813	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		4	3						2	2	2	3	2	14.435	13.191	2;3	0.00079912	10904	160511_QHF_FH_JSI9i_2	72.928	21.582			1.3325	1.2607	26.779	7	2	Median	1.3772	1.1545	43.618	2	1	Median	0.78474	0.92576	NaN	1	0	Median	1.2662	1.2465	1.6058	2	0	Median	1.4954	1.5641	19.094	2	1	Median	820560000	345900000	474660000	147830000	50649000	97183000	16086000	11140000	4946900	363460000	161080000	202390000	293180000	123040000	170140000	50430	2528	47471	305026;305027;305028;305029;305030;305031;305032;305033;305034	410234;410235;410236;410237;410238;410239;410240;410241	410236			7	
TIHFPSGQTLDVFEAAELYQK	1	Unmodified	2393.1903	0.19032655	1617	P48200	IREB2	Iron-responsive element-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	99.728	99.737	3	3.2867E-13	86311	160511_QHF_FH_JSI12i_3	119.31	103.01			1.207	1.1483	37.461	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.615	1.4966	NaN	1	1	Median	0.90203	0.88109	NaN	1	0	Median	58864000	29755000	29109000	0	0	0	0	0	0	15086000	6255400	8830300	43778000	23500000	20279000	50431	1617	47472	305035;305036	410242;410243;410244	410243			3	
TIHGLIYNALK	1	Unmodified	1241.7132	0.71320746	2570;2394	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.12	6.49			9						8	4	5	4	4	58.322	53.607	2;3	6.0958E-06	44374	160511_QHF_FH_JSI9i_3	80.706	74.986			0.91906	0.94236	23.56	15	2	Median	1.0747	0.88371	15.16	4	0	Median	0.53525	0.62189	41.025	4	1	Linear	0.97531	0.93425	13.47	4	0	Median	0.78533	0.80299	25.618	3	1	Plateau	3022500000	1421200000	1601300000	885370000	373630000	511740000	806340000	446790000	359540000	862610000	368020000	494590000	468220000	232790000	235430000	50432	2570;2394	47473	305037;305038;305039;305040;305041;305042;305043;305044;305045;305046;305047;305048;305049;305050;305051;305052;305053	410245;410246;410247;410248;410249;410250;410251;410252;410253;410254;410255;410256;410257;410258;410259;410260;410261;410262;410263;410264;410265;410266;410267;410268;410269;410270;410271;410272;410273;410274;410275	410261			31	
TIHSYQGQIISHEK	1	Unmodified	1639.8318	0.83181904	4195	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		23.616	22.758	3	0.00024714	18499	160511_QHF_FH_JSI9i_3	65.472	59.309			0.70272	0.80041	50.915	3	1	Median	0.69924	0.59155	NaN	1	0	Median	0.70272	0.80041	NaN	1	0	Median	1.7114	1.5973	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66163000	30275000	35888000	11257000	5696000	5561200	23524000	14767000	8757100	31382000	9811800	21570000	0	0	0	50433	4195	47474	305054;305055;305056;305057	410276;410277;410278;410279;410280	410280			5	
TIHTDVLFGLLK	1	Unmodified	1355.7813	0.78128702	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1	2	2	3	2	89.928	89.588	3	6.0046E-05	77610	160511_QHF_FH_JSI12i_3	77.062	59.695			1.1624	1.1235	30.932	7	4	Median	1.1624	1.0547	NaN	1	1	Median	0.56825	0.69715	NaN	1	1	Median	1.4704	1.4216	34.57	3	2	Median	1.2163	1.3161	22.38	2	0	Median	93339000	43958000	49381000	4157700	1100600	3057000	9004400	6440700	2563700	46288000	21166000	25122000	33890000	15251000	18639000	50434	2544	47475	305058;305059;305060;305061;305062;305063;305064;305065;305066	410281;410282;410283;410284;410285;410286;410287;410288;410289;410290;410291;410292	410292			12	
TIHTSTGK	1	Unmodified	843.44503	0.4450311	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.97		3	5						3	4	1	3	3	4.7819	1.8045	2;3	0.00037738	2248	160511_QHF_FH_JSI12i_3	79.474	66.02			1.0685	3.0644	74.313	7	2	Linear	1.0357	0.88291	4.3077	2	0	Median	NaN	NaN	NaN	0	0	Median	2.5627	2.4293	120.5	2	1	Median	1.0803	1.091	40.155	3	1	Plateau	3211400000	1350300000	1861100000	33058000	15277000	17781000	0	0	0	996900000	241740000	755160000	2181400000	1093300000	1088100000	50435	2571	47476	305067;305068;305069;305070;305071;305072;305073;305074;305075;305076;305077	410293;410294;410295;410296;410297;410298;410299;410300;410301;410302;410303;410304	410303			12	
TIIEFLSFLHLK	1	Unmodified	1459.8439	0.84388728	1210	P22466	GAL	Galanin peptides;Galanin;Galanin message-associated peptide	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	96.051	86.748	3	1.3674E-19	47259	160513_QHF_FH_JSI12Kac_6	150.06	122.37			0.86376	0.9241	38.893	3	0	Plateau	1.0517	0.89037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8178	1.7778	NaN	1	0	Median	0.86376	0.9241	NaN	1	0	Median	124290000	54276000	70018000	41528000	20325000	21203000	0	0	0	40506000	14482000	26023000	42261000	19469000	22792000	50436	1210	47477	305078;305079;305080	410305;410306	410306			2	
TIIFCETKK	2	Unmodified	1138.6056	0.60563084	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								3	1	2	31.473	30.761	2;3	0.0011672	25723	160511_QHF_FH_JSI12i_3	48.981	29.849			1.1383	1.1289	48.804	5	3	Median	NaN	NaN	NaN	0	0	Median	0.92116	1.0806	85.922	2	2	Median	0.88636	0.8262	NaN	1	0	Median	1.3358	1.3365	23.871	2	1	Median	539620000	275060000	264560000	0	0	0	116790000	55251000	61536000	147500000	81208000	66290000	275330000	138600000	136730000	50437	4940	47478	305081;305082;305083;305084;305085;305086	410307;410308;410309;410310;410311;410312;410313;410314	410313			8	
TIIFSIHQPR	0	Unmodified	1210.6822	0.68224168	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	4	3	2	1	58.112	51.203	2;3	3.0674E-15	26809	160513_QHF_FH_JSI12Kac_6	161.17	141.9			0.88768	0.8761	27.583	10	1	Median	1.5092	0.8761	42.546	4	0	Linear	0.88092	1.0515	11.581	3	0	Plateau	0.94604	0.90417	11.351	2	1	Median	0.75389	0.81249	NaN	1	0	Median	1675000000	809790000	865220000	397440000	184310000	213130000	885580000	439750000	445830000	248770000	119970000	128800000	143220000	65757000	77459000	50438	5445	47479	305087;305088;305089;305090;305091;305092;305093;305094;305095;305096	410315;410316;410317;410318;410319;410320;410321;410322;410323;410324;410325;410326;410327;410328;410329;410330;410331	410327			17	
TIIFVETK	1	Unmodified	949.54843	0.54843354	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.88	6.26	2	3	1				4	5	1	2	4	5	5	62.782	54.462	2	0.00017513	28679	160513_QHF_FH_JSI9Kac_5	119.27	96.255			1.0111	1.0275	44.607	12	3	Median	0.64322	0.54503	84.024	2	1	Median	0.88988	1.0258	7.155	3	1	Plateau	1.0812	1.0651	45.261	4	1	Median	0.98023	1.0466	17.466	3	0	Plateau	842570000	424070000	418500000	98600000	50138000	48462000	261870000	142190000	119670000	310490000	148500000	161990000	171620000	83238000	88378000	50439	3893	47480	305097;305098;305099;305100;305101;305102;305103;305104;305105;305106;305107;305108;305109;305110;305111;305112	410332;410333;410334;410335;410336;410337;410338;410339;410340;410341;410342;410343;410344;410345;410346;410347;410348;410349;410350;410351;410352	410338			21	
TIIGDFQK	1	Unmodified	920.49673	0.49673232	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.53	3	5	4				1	3		2	4	4	6	44.325	41.08	2	0.0003612	36142	160511_QHF_FH_JSI10i_2	110.81	67.741			0.95983	1.0105	16.47	16	2	Median	1.2004	1.0039	18.037	2	0	Median	0.762	0.88799	8.2862	4	1	Median	1.198	1.1562	11.444	4	0	Median	0.91441	1.0105	17.968	6	1	Median	1867800000	877010000	990820000	287840000	127140000	160700000	410990000	238960000	172040000	587900000	234580000	353330000	581090000	276330000	304750000	50440	3961	47481	305113;305114;305115;305116;305117;305118;305119;305120;305121;305122;305123;305124;305125;305126;305127;305128	410353;410354;410355;410356;410357;410358;410359;410360;410361;410362;410363;410364;410365;410366;410367;410368;410369;410370	410369			18	
TIIGDFQKEQK	2	Acetyl (K)	1347.7034	0.70343063	3961	Q96A49	SYAP1	Synapse-associated protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	59.598	48.807	2	0.003937	27369	160513_QHF_FH_JSI12Kac_4	74.162	47.648			0.68211	0.71841	44.332	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86772	0.9829	NaN	1	0	Median	0.5362	0.52508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6137300	4460300	1677000	0	0	0	2614900	1418000	1196900	2524000	2044000	480060	998340	998340	0	50441	3961	47482	305129;305130;305131	410371;410372;410373	410373	3011		3	
TIIGGAQIIDLMMLVIDVTK	1	Unmodified	2143.1996	0.19963437	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.29	99.573	3	0.060058	58981	160513_QHF_FH_JSI10Kac_6	32.457	18.148			0.66883	0.80203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66883	0.80203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27889000	21063000	6825800	0	0	0	27889000	21063000	6825800	0	0	0	0	0	0	50442	1896	47483	305132	410374	410374			0	
TIIGQQGDQSCANK	1	Unmodified	1518.7097	0.709655	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	18.503	18.266	2	9.6025E-10	15564	160511_QHF_FH_JSI11i_1	104.52	93.999			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50443	1430	47484	305133;305134;305135	410375;410376;410377	410375			3	
TIIGSFNGALAAVPVQDLGSTVIK	1	Unmodified	2370.3159	0.31586142	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	101.44	101.36	2;3	2.9978E-302	88114	160511_QHF_FH_JSI12i_3	377.76	345.14			0.90283	1.0095	14.878	4	1	Median	NaN	NaN	NaN	0	0	Median	0.91098	1.1162	NaN	1	0	Median	0.86021	0.87005	8.3968	2	1	Median	1.0765	1.1038	NaN	1	0	Median	636420000	293780000	342640000	62923000	0	62923000	93893000	37554000	56339000	299130000	160480000	138640000	180470000	95744000	84731000	50444	4496	47485	305136;305137;305138;305139;305140	410378;410379;410380	410380			3	
TIIIHHETIFPDAK	1	Unmodified	1633.8828	0.88279198	3284	Q7Z6B7	SRGAP1	SLIT-ROBO Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.854	50.736	4	0.0022792	43441	160511_QHF_FH_JSI12i_3	48.112	41.695			0.82097	0.79783	15.59	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95815	0.89081	NaN	1	0	Median	0.70342	0.71456	NaN	1	0	Median	73147000	40769000	32379000	0	0	0	0	0	0	31499000	17525000	13974000	41648000	23243000	18405000	50445	3284	47486	305141;305142	410381;410382;410383	410382			3	
TIIIQHENIFPSPR	0	Unmodified	1663.9046	0.90459006	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			64.712	63.208	3	1.7537E-05	52936	160511_QHF_FH_JSI10i_3	115.68	101.94			1.3176	1.2682	32.109	2	0	Median	1.958	1.5915	NaN	1	0	Median	0.88666	1.0106	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65146000	29171000	35975000	31246000	11547000	19699000	33900000	17625000	16276000	0	0	0	0	0	0	50446	467	47487	305143;305144	410384;410385;410386	410385			3	
TIILFTK	1	Unmodified	834.52149	0.52149051	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	6.71		3	2					1	4	3	2	2	3	66.728	61.793	2	0.010374	54214	160511_QHF_FH_JSI9i_2	75.109	8.0772			1.1289	1.3469	13.785	10	0	Linear	1.2048	1.0319	9.9171	3	0	Plateau	1.0056	1.2033	17.979	2	0	Median	1.3073	1.221	5.9413	2	0	Median	1.1287	1.1361	6.607	3	0	Plateau	744510000	326640000	417870000	137050000	64436000	72616000	157630000	78424000	79203000	278260000	109360000	168910000	171570000	74422000	97145000	50447	5323	47488	305145;305146;305147;305148;305149;305150;305151;305152;305153;305154	410387;410388;410389;410390;410391;410392;410393;410394	410390			8	
TIIPLISQCTPK	1	Unmodified	1369.7639	0.7639224	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	4.68	5	8	9					4		5	6	8	7	71.9	69.737	2;3	2.8454E-07	60905	160511_QHF_FH_JSI12i_3	129.16	121.51			1.2496	1.1919	32.376	26	7	Median	1.3903	1.2303	22.548	5	2	Median	0.94825	1.146	29.691	6	1	Median	0.83644	0.84706	35.54	8	2	Median	1.418	1.4917	9.9893	7	2	Median	3584600000	1682200000	1902300000	265430000	119430000	146000000	570080000	284020000	286060000	1542600000	785400000	757150000	1206500000	493370000	713130000	50448	1504	47489	305155;305156;305157;305158;305159;305160;305161;305162;305163;305164;305165;305166;305167;305168;305169;305170;305171;305172;305173;305174;305175;305176;305177;305178;305179;305180	410395;410396;410397;410398;410399;410400;410401;410402;410403;410404;410405;410406;410407;410408;410409;410410;410411;410412;410413;410414;410415;410416;410417;410418;410419;410420;410421;410422;410423;410424;410425;410426;410427;410428;410429;410430;410431;410432;410433	410431			39	
TIIQNPTDQQK	1	Unmodified	1284.6674	0.66737948	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	5.63	4	2	3		3	4	4			5	6	4	5	31.05	24.789	2	4.9129E-72	5815	160513_QHF_FH_JSI9Kac_3	235.66	187.79			0.83863	0.87792	11.184	18	4	Median	1.1186	0.93857	6.5329	3	0	Plateau	0.75638	0.88731	4.6001	6	0	Median	0.86267	0.84835	11.008	4	1	Median	0.81039	0.86858	13.679	5	3	Median	7296000000	3453000000	3843000000	2011500000	767550000	1244000000	1828200000	958550000	869650000	1778000000	937860000	840160000	1678300000	789080000	889180000	50449	5475	47490	305181;305182;305183;305184;305185;305186;305187;305188;305189;305190;305191;305192;305193;305194;305195;305196;305197;305198;305199;305200	410434;410435;410436;410437;410438;410439;410440;410441;410442;410443;410444;410445;410446;410447;410448;410449;410450;410451;410452;410453;410454;410455;410456;410457;410458;410459;410460;410461;410462;410463;410464;410465;410466;410467;410468;410469;410470;410471	410455			37	
TIIQNPTDQQKK	2	Unmodified	1412.7623	0.7623425	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		3	2	20.061	19.911	2;3	7.8683E-06	16733	160511_QHF_FH_JSI11i_3	122.26	67.65			1.0826	1.0456	18.997	6	3	Median	1.5159	1.3038	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2508	1.1423	22.721	3	2	Median	0.92139	0.93854	2.7787	2	0	Median	414400000	187190000	227200000	55874000	21488000	34386000	0	0	0	122380000	52817000	69560000	236140000	112890000	123260000	50450	5475	47491	305201;305202;305203;305204;305205;305206	410472;410473;410474;410475;410476	410473			5	
TIISLDTSQMNR	0	Unmodified	1377.6922	0.69221402	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	56.964	56.074	2	6.7121E-06	48002	160511_QHF_FH_JSI12i_2	121.6	112.74			1.2688	1.2325	34.375	6	0	Median	0.99568	0.83186	47.359	2	0	Median	1.246	1.5445	NaN	1	0	Median	1.2028	1.199	12.138	2	0	Median	1.2995	1.4441	NaN	1	0	Median	620210000	263060000	357160000	119940000	55001000	64938000	102050000	31661000	70384000	292920000	131110000	161800000	105310000	45281000	60031000	50451	93	47492	305207;305208;305209;305210;305211;305212	410477;410478;410479;410480	410478			4	
TIISYIDEQFER	0	Unmodified	1512.746	0.74602373	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.07	4.31		8	5					2		3	3	5	4	75.732	73.633	2	5.4195E-11	65198	160511_QHF_FH_JSI11i_2	193.52	176.5			1.0092	0.98915	27.093	15	14	Median	1.0254	0.87477	24.976	3	3	Plateau	0.68611	0.84264	29.784	3	3	Median	1.1128	1.1164	9.2594	5	4	Median	1.1465	1.1956	24.312	4	4	Median	3282300000	1712000000	1570300000	616430000	305470000	310960000	935410000	587930000	347480000	957790000	464900000	492890000	772670000	353730000	418950000	50452	2603	47493	305213;305214;305215;305216;305217;305218;305219;305220;305221;305222;305223;305224;305225;305226;305227	410481;410482;410483;410484;410485;410486;410487;410488;410489;410490;410491;410492;410493;410494;410495;410496;410497;410498	410492			18	
TIITYPWFQNSSVILFLNK	1	Unmodified	2283.2303	0.23034087	1330;1697	P29992;P50148	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	97.848	89.428	2;3	1.5376E-103	50638	160513_QHF_FH_JSI11Kac_6	283.19	254.38			1.0093	0.97361	5.8989	8	1	Median	1.1034	0.92469	8.1932	2	0	Median	0.86032	1.0046	5.3322	2	1	Median	1.0213	0.97728	1.9632	2	0	Median	0.95906	1.0037	7.316	2	0	Median	1855600000	932010000	923600000	377780000	194980000	182800000	430120000	230350000	199770000	709890000	328320000	381570000	337810000	178350000	159460000	50453	1330;1697	47494	305228;305229;305230;305231;305232;305233;305234;305235	410499;410500;410501;410502;410503;410504;410505;410506;410507;410508;410509;410510;410511	410501			13	
TIITYPWFQNSSVILFLNKK	2	Unmodified	2411.3253	0.32530389	1330;1697	P29992;P50148	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.689	87.295	3	1.5767E-122	47133	160513_QHF_FH_JSI12Kac_6	250.55	203.46			0.9756	0.95995	18.661	4	1	Median	1.2545	1.0607	NaN	1	0	Median	1.053	1.2631	NaN	1	1	Median	0.90392	0.86879	NaN	1	0	Median	0.80107	0.84927	NaN	1	0	Median	1746300000	886230000	860120000	444790000	197380000	247410000	467690000	215780000	251910000	519290000	294660000	224630000	314580000	178410000	136170000	50454	1330;1697	47495	305236;305237;305238;305239	410512;410513;410514;410515;410516;410517;410518;410519	410518			8	
TILAENDEVK	1	Unmodified	1130.5819	0.58191851	3056	Q6IE81	JADE1	Protein Jade-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		48.007	47.479	2	0.046306	41570	160511_QHF_FH_JSI9i_2	36.395	26.408			1.0849	0.96427	5.6431	2	0	Median	1.2	1.0035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98088	0.92655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	757510000	349020000	408490000	432090000	191580000	240500000	0	0	0	325430000	157440000	167990000	0	0	0	50455	3056	47496	305240;305241	410520;410521	410521			2	
TILALMK	1	Unmodified	788.483	0.48299651	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.978	57.147	2	0.0048398	46958	160511_QHF_FH_JSI9i_3	97.071	63.333			0.99644	1.0148	7.2038	4	0	Median	1.4433	1.1497	NaN	1	0	Median	0.90221	1.0301	NaN	1	0	Median	1.0053	0.97706	NaN	1	0	Median	0.98763	0.99976	NaN	1	0	Median	2712400000	1303100000	1409300000	566230000	229910000	336320000	499680000	264940000	234750000	584170000	274930000	309250000	1062300000	533290000	529030000	50456	1723	47497	305242;305243;305244;305245	410522;410523;410524;410525;410526;410527;410528;410529;410530	410526			9	
TILATGELGTLTNVYK	1	Unmodified	1692.9298	0.92980175	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	85.276	84.576	2;3	6.1327E-15	74433	160511_QHF_FH_JSI11i_2	198.32	158.4			0.86779	0.99847	19.96	8	0	Median	1.2363	1.0806	3.1173	2	0	Median	0.83096	1.0247	3.8154	2	0	Median	0.87931	0.88953	13.531	2	0	Median	0.71108	0.77738	35.547	2	0	Median	263200000	135730000	127460000	41137000	19159000	21978000	53564000	26948000	26616000	96073000	50053000	46020000	72420000	39574000	32847000	50457	5555	47498	305246;305247;305248;305249;305250;305251;305252;305253	410531;410532;410533;410534;410535;410536;410537;410538	410536			7	
TILEEEITPTIQK	1	Unmodified	1513.8239	0.8239397	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	4.26	6	1					1			2	4	1	1	64.134	63.453	2;3	1.4079E-10	57575	160511_QHF_FH_JSI10i_1	151.15	123.82			0.87847	0.89239	15.398	7	0	Plateau	1.2551	1.0486	9.9682	2	0	Median	0.7724	0.92169	17.174	3	0	Plateau	0.82689	0.8228	NaN	1	0	Median	0.81804	0.85569	NaN	1	0	Median	634790000	332940000	301850000	150830000	64510000	86321000	187190000	100450000	86742000	133390000	74491000	58896000	163370000	93485000	69888000	50458	679	47499	305254;305255;305256;305257;305258;305259;305260;305261	410539;410540;410541;410542;410543;410544;410545;410546;410547	410543			6	
TILEMLLGFLK	1	Unmodified	1276.7465	0.74648142	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	103.32	103.28	2	3.6288E-13	92312	160511_QHF_FH_JSI11i_3	171.36	89.766			0.96758	0.95833	12.377	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.96758	1.1773	NaN	1	1	Median	1.1584	1.072	NaN	1	0	Median	0.93306	0.92123	NaN	1	1	Median	272450000	132900000	139550000	0	0	0	6919400	3462500	3456900	44342000	20223000	24119000	221180000	109210000	111970000	50459	4258	47500	305262;305263;305264	410548;410549;410550	410548			3	
TILENHFGK	1	Unmodified	1057.5556	0.55564418	410	O60318	MCM3AP	Germinal-center associated nuclear protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	28.479	28.434	2	0.0042949	23863	160511_QHF_FH_JSI12i_3	58.596	23.24			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50460	410	47501	305265	410551	410551			1	
TILESNDVPGMLAYSLK	1	Unmodified	1849.9496	0.94955092	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.696	5	8	3							4	5	4	3	92.919	92.467	2;3	7.1908E-23	81181	160511_QHF_FH_JSI9i_2	182.17	168.77			1.0138	0.9992	13.517	14	1	Median	1.1353	0.98605	21.701	4	0	Median	0.87989	1.0474	10.855	4	1	Median	1.0044	0.97521	7.3944	3	0	Median	0.86292	0.92824	12.496	3	0	Median	812820000	386460000	426350000	145060000	60544000	84514000	234990000	126940000	108040000	236380000	97296000	139090000	196390000	101680000	94709000	50461	4272	47502	305266;305267;305268;305269;305270;305271;305272;305273;305274;305275;305276;305277;305278;305279;305280;305281	410552;410553;410554;410555;410556;410557;410558;410559;410560;410561;410562;410563;410564;410565;410566;410567;410568;410569;410570;410571;410572;410573;410574;410575;410576;410577;410578	410570			26	
TILESNDVPGMLAYSLK	1	Oxidation (M)	1865.9445	0.94446554	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	1	0				By MS/MS	2	0		2											2	79.944	78.766	2	0.0046671	68067	160511_QHF_FH_JSI12i_2	58.172	42.633			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50462	4272	47502	305282;305283	410579;410580	410579		2425	2	
TILFGVK	1	Unmodified	776.47963	0.47962569	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	55.271	54.333	2	0.016664	44647	160511_QHF_FH_JSI9i_3	62.714	32.046			1.0627	1.1141	22.862	6	0	Median	1.5455	1.2286	NaN	1	0	Median	0.82049	0.97939	14.126	2	0	Median	1.2175	1.1469	NaN	1	0	Median	0.99603	1.1244	44.687	2	0	Median	248490000	121470000	127020000	29928000	12833000	17094000	57889000	34486000	23403000	65846000	31864000	33981000	94825000	42283000	52541000	50463	4868	47503	305284;305285;305286;305287;305288;305289	410581;410582;410583;410584;410585;410586;410587	410585			7	
TILFIDEIHR	0	Unmodified	1255.6925	0.69247202	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	72.99	69.441	3	3.3311E-26	62516	160511_QHF_FH_JSI11i_3	164.97	131.01			0.92871	0.94575	15.441	11	1	Median	1.3352	1.1337	14.843	2	0	Median	0.7742	0.93348	4.6368	3	1	Plateau	0.92871	0.90756	9.1054	3	0	Median	1.0018	1.1055	23.379	3	0	Median	404480000	206060000	198420000	51101000	21112000	29989000	87500000	52529000	34971000	136920000	66075000	70845000	128960000	66342000	62617000	50464	4235	47504	305290;305291;305292;305293;305294;305295;305296;305297;305298;305299;305300	410588;410589;410590;410591;410592;410593;410594;410595;410596;410597;410598;410599;410600;410601;410602;410603;410604	410589			17	
TILGAGPVLEAFGNAK	1	Unmodified	1556.8562	0.85624288	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	91.029	90.47	2	0.00014167	78478	160511_QHF_FH_JSI12i_3	104.24	68.83			1.008	1.1287	33.055	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1768	1.4259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86346	0.89347	NaN	1	0	Median	30552000	17338000	13214000	0	0	0	5396900	2503100	2893800	0	0	0	25155000	14835000	10320000	50465	2420	47505	305301;305302	410605;410606;410607	410607			3	
TILGGIAFVAIK	1	Unmodified	1201.7434	0.74344495	5092	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	93.548	93.023	2	0.0049946	80619	160511_QHF_FH_JSI12i_3	55.064	49.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50466	5092	47506	305303;305304	410608;410609	410609			2	
TILGPTENIK	1	Unmodified	1084.6128	0.61282471	527	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	42.085	41.236	2	6.0977E-05	35402	160511_QHF_FH_JSI11i_2	90.906	47.782			1.0544	1.1062	7.8354	8	2	Median	1.2345	1.0407	8.7745	2	0	Median	0.93384	1.1396	4.3281	2	1	Median	1.1424	1.1281	1.92	2	1	Median	0.90433	0.97329	0.58413	2	0	Median	1006300000	505280000	501000000	157050000	69052000	87996000	280020000	139030000	141000000	321930000	158340000	163590000	247280000	138860000	108420000	50467	527	47507	305305;305306;305307;305308;305309;305310;305311;305312	410610;410611;410612;410613;410614;410615;410616;410617;410618;410619;410620	410619			11	
TILGTIMNTIK	1	Unmodified	1203.6897	0.68969482	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	79.372	78.629	2	2.8258E-09	64725	160511_QHF_FH_JSI9i_3	127.76	72.234			0.93809	0.84369	12.155	4	0	Median	0.95757	0.76228	NaN	1	0	Median	0.7285	0.84841	NaN	1	0	Median	0.919	0.839	NaN	1	0	Median	0.9907	1.0197	NaN	1	0	Median	211270000	103710000	107560000	52293000	22601000	29692000	43091000	24985000	18105000	92130000	45813000	46316000	23759000	10312000	13447000	50468	2938	47508	305313;305314;305315;305316	410621;410622;410623;410624;410625;410626	410625			6	
TILLLLLETLGDK	1	Unmodified	1440.8803	0.88033237	3266;476	O75122;Q7Z460	CLASP2;CLASP1	CLIP-associating protein 2;CLIP-associating protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	100.51	94.426	2	1.5337E-47	52122	160513_QHF_FH_JSI9Kac_6	229.16	172.6			0.40653	0.44724	85.845	4	4	Median	0.23663	0.20064	NaN	1	1	Median	0.55043	0.63316	NaN	1	1	Median	1.5317	1.4354	NaN	1	1	Median	0.30025	0.31591	NaN	1	1	Median	304080000	207050000	97028000	60708000	47281000	13426000	185170000	121670000	63500000	19714000	7830500	11884000	38484000	30265000	8219100	50469	476;3266	47509	305317;305318;305319;305320;305321	410627;410628;410629;410630;410631	410629			5	
TILLLLLETLGDKEPTIR	1	Unmodified	2037.2085	0.2085428	476	O75122	CLASP2	CLIP-associating protein 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.501	91.781	3	1.25E-05	53413	160513_QHF_FH_JSI10Kac_6	89.846	54.543			2.5823	3.1058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5823	3.1058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65159000	30953000	34206000	0	0	0	65159000	30953000	34206000	0	0	0	0	0	0	50470	476	47510	305322	410632	410632			0	
TILLLYYLLR	0	Unmodified	1279.7904	0.79039515	5690	Q9Y5Y5	PEX16	Peroxisomal membrane protein PEX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.347	90.92	2	4.3909E-07	54087	160513_QHF_FH_JSI10Kac_6	107.47	61.469			0.67006	0.67339	46.164	2	1	Median	1.0989	0.93332	NaN	1	0	Median	0.40856	0.48585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61920000	36180000	25740000	42593000	21495000	21099000	19327000	14685000	4641500	0	0	0	0	0	0	50471	5690	47511	305323;305324	410633;410634	410634			2	
TILLNTK	1	Unmodified	801.496	0.49600404	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.75	2	5	3				1	3		3	4	4	3	35.391	31.961	2	0.0099224	25905	160511_QHF_FH_JSI9i_3	77.058	8.1428			0.96319	1.0179	70.11	14	2	Median	1.1619	0.93164	104.87	3	2	Median	0.78023	0.93014	10.291	4	0	Linear	1.1994	1.1923	102.76	4	0	Median	0.77219	0.86368	29.457	3	0	Plateau	2911200000	1473600000	1437500000	793350000	365040000	428310000	756850000	440370000	316480000	839540000	394380000	445160000	521410000	273820000	247590000	50472	1600	47512	305325;305326;305327;305328;305329;305330;305331;305332;305333;305334;305335;305336;305337;305338	410635;410636;410637;410638;410639;410640;410641;410642;410643;410644;410645;410646;410647;410648	410641			14	
TILMMGR	0	Unmodified	820.42992	0.42991509	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.52	3	4	4					2	4	4	5	4	4	47.464	43.513	2	2.0961E-11	23776	160513_QHF_FH_JSI10Kac_6	153.67	132.69			0.958	0.99622	10.777	17	0	Median	1.3932	1.1753	6.8553	4	0	Median	0.87728	1.0348	8.259	5	0	Median	0.9868	0.90563	4.5664	4	0	Linear	0.87876	0.8283	9.179	4	0	Linear	18455000000	9100100000	9354800000	4760900000	1992800000	2768100000	5573900000	2968900000	2605000000	4488000000	2162900000	2325100000	3632000000	1975400000	1656600000	50473	1033	47513	305339;305340;305341;305342;305343;305344;305345;305346;305347;305348;305349;305350;305351;305352;305353;305354;305355	410649;410650;410651;410652;410653;410654;410655;410656;410657;410658;410659;410660;410661;410662;410663;410664;410665;410666;410667;410668;410669;410670;410671;410672;410673;410674;410675;410676;410677;410678;410679;410680;410681;410682	410682			34	
TILMMGR	0	Oxidation (M)	836.42483	0.42482971	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.89		1	2					1	7	4	2	2	3	36.516	29.458	2	0.0091588	17973	160513_QHF_FH_JSI10Kac_6	80.294	37.294			0.96223	1.0457	11.918	11	0	Median	1.4115	1.1131	5.0065	4	0	Linear	0.91763	1.0586	1.735	2	0	Median	0.96781	0.96175	10.22	2	0	Median	0.95054	1.025	10.749	3	0	Median	1141900000	565200000	576720000	470270000	210170000	260100000	492680000	252900000	239790000	79629000	40644000	38985000	99338000	61487000	37851000	50474	1033	47513	305356;305357;305358;305359;305360;305361;305362;305363;305364;305365;305366	410683;410684;410685;410686;410687;410688;410689;410690;410691;410692	410692		641;642	10	
TILMMGR	0	2 Oxidation (M)	852.41974	0.41974433	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	2	0	By MS/MS	By MS/MS		By MS/MS	15.3	0.7							1	3	3	2	3		2	21.192	12.76	2	0.004333	8479	160513_QHF_FH_JSI9Kac_5	75.269	41.911			0.97425	1.1391	14.27	7	0	Median	1.3142	1.1171	2.7615	2	0	Median	0.97425	1.1644	2.59	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1616	1.2697	31.674	2	0	Median	182690000	86798000	95897000	78641000	33308000	45333000	66703000	35722000	30980000	0	0	0	37351000	17768000	19583000	50475	1033	47513	305367;305368;305369;305370;305371;305372;305373	410693;410694;410695;410696;410697;410698	410693		641;642	6	
TILNLENSNK	1	Unmodified	1144.6088	0.60880197	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		39.465	38.643	2	1.0195E-06	33055	160511_QHF_FH_JSI11i_2	125.57	79.553			0.43292	0.40105	47.221	3	3	Plateau	0.2363	0.20113	NaN	1	1	Median	0.15238	0.18611	NaN	1	1	Median	0.43566	0.43715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	928690000	731170000	197520000	305270000	247190000	58080000	267430000	230000000	37433000	355980000	253970000	102010000	0	0	0	50476	3438	47514	305374;305375;305376	410699;410700;410701	410700			3	
TILPAAAQDVYYR	0	Unmodified	1479.7722	0.7721789	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		63.245	62.553	2	6.2213E-05	54425	160511_QHF_FH_JSI11i_2	74.944	52.204			0.55295	0.62091	15.872	2	2	Median	NaN	NaN	NaN	0	0	Median	0.56188	0.69465	NaN	1	1	Median	0.54416	0.55499	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50178000	35105000	15073000	0	0	0	22329000	15204000	7124300	27850000	19901000	7948900	0	0	0	50477	816	47515	305377;305378;305379	410702;410703;410704	410703			3	
TILPMSR	0	Unmodified	816.45276	0.45275902	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	36.511	35.742	2	0.017885	29895	160511_QHF_FH_JSI10i_3	60.788	35.169			0.75554	1.2203	23.357	4	0	Linear	1.5975	1.3099	NaN	1	0	Median	0.93826	1.1368	NaN	1	0	Median	1.5235	1.4125	NaN	1	0	Median	0.82896	0.83259	NaN	1	0	Median	313110000	136840000	176260000	66898000	23162000	43736000	79387000	40145000	39242000	72909000	28589000	44320000	93915000	44949000	48966000	50478	3921	47516	305380;305381;305382;305383	410705;410706;410707;410708;410709;410710	410707			6	
TILQFLTNYFYDVEALRDYLLQR	0	Unmodified	2893.5014	0.50143035	5062	Q9NW81	ATP5SL	ATP synthase subunit s-like protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			100.98	95.259	3	8.3918E-11	56187	160513_QHF_FH_JSI10Kac_6	159.74	147.06			0.83368	0.95889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83368	0.95889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185430000	59954000	125480000	0	0	0	185430000	59954000	125480000	0	0	0	0	0	0	50479	5062	47517	305384	410711	410711			1	
TILQGSSEGTGLSALLPQPK	1	Unmodified	1996.0841	0.084070566	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	85.428	85.352	2;3	6.9282E-08	74247	160511_QHF_FH_JSI12i_3	97.86	81.327			0.99378	0.9654	18.529	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2149	1.1006	NaN	1	1	Median	0.81288	0.84685	NaN	1	0	Median	70964000	33651000	37312000	0	0	0	0	0	0	33295000	15424000	17870000	37669000	18227000	19442000	50480	3875	47518	305385;305386;305387	410712;410713;410714;410715;410716	410716			5	
TILQHLSEAWR	0	Unmodified	1352.7201	0.72008375	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				55.505	53.939	2	0.00011491	44239	160511_QHF_FH_JSI9i_3	91.855	65.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50481	3101	47519	305388;305389	410717;410718	410717			2	
TILSLMTR	0	Unmodified	933.53174	0.53173762	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	3	3	2	2	61.158	57.809	2	0.00025513	31857	160513_QHF_FH_JSI10Kac_6	117.4	63.689			1.007	1.084	16.427	10	2	Median	1.4412	1.2395	22.28	3	1	Median	0.9292	1.1151	15.02	3	1	Median	1.0039	1.0054	15.067	2	0	Median	0.9058	0.95059	14.561	2	0	Median	1036000000	495540000	540500000	314860000	141530000	173330000	414930000	208240000	206690000	148270000	74328000	73943000	157980000	71444000	86533000	50482	1798	47520	305390;305391;305392;305393;305394;305395;305396;305397;305398;305399	410719;410720;410721;410722;410723;410724;410725;410726;410727;410728;410729;410730	410730			12	
TILSNQTVDIPENVDITLK	1	Unmodified	2112.1314	0.13141469	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.829	8	4	4							4	4	4	4	88.833	88.315	2;3	0	80338	160511_QHF_FH_JSI10i_1	405.82	369.51			0.85547	0.94116	14.338	16	1	Median	1.1784	0.99631	22.856	4	0	Median	0.78249	0.92259	14.812	4	0	Median	0.91988	0.90039	10.11	4	1	Median	0.85405	0.9093	13.237	4	0	Median	2915200000	1479800000	1435400000	393860000	188310000	205550000	1148000000	614140000	533890000	535820000	271600000	264220000	837500000	405750000	431750000	50483	1398	47521	305400;305401;305402;305403;305404;305405;305406;305407;305408;305409;305410;305411;305412;305413;305414;305415	410731;410732;410733;410734;410735;410736;410737;410738;410739;410740;410741;410742;410743;410744;410745;410746;410747;410748;410749;410750;410751;410752;410753;410754;410755;410756;410757;410758;410759;410760;410761;410762;410763;410764;410765;410766;410767;410768;410769;410770;410771	410754			41	
TILTLTGVSTLGDVK	1	Unmodified	1516.8712	0.87122424	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.14	4	8	4					2		3	5	6	4	85.336	83.655	2;3	2.3239E-21	73241	160511_QHF_FH_JSI12i_2	174.9	138.48			0.9371	1.0152	9.9711	18	2	Median	1.2066	1.0257	4.7456	3	0	Median	0.90563	1.0146	12.468	5	2	Median	0.92389	0.91338	9.0166	6	0	Median	0.86082	0.95029	7.624	4	0	Linear	1344300000	662110000	682160000	253310000	111170000	142150000	392050000	215110000	176940000	364770000	176670000	188090000	334140000	159160000	174980000	50484	23	47522	305416;305417;305418;305419;305420;305421;305422;305423;305424;305425;305426;305427;305428;305429;305430;305431;305432;305433	410772;410773;410774;410775;410776;410777;410778;410779;410780;410781;410782;410783;410784;410785;410786;410787;410788;410789;410790;410791;410792;410793;410794;410795;410796;410797;410798;410799;410800	410775			28	
TILTTSHAFPYIK	1	Unmodified	1490.8133	0.81331543	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	2	3	3	63.867	63.084	2;3	5.3262E-16	54437	160511_QHF_FH_JSI12i_3	161.48	134.51			0.96758	1.0413	32.915	8	3	Median	1.5527	1.2579	NaN	1	0	Median	0.89426	1.0719	6.8377	2	0	Median	0.78827	0.77886	23.392	2	1	Median	1.0384	1.0617	50.23	3	2	Median	637520000	321990000	315530000	55105000	18252000	36853000	113960000	51655000	62300000	168740000	84920000	83819000	299720000	167160000	132550000	50485	4181	47523	305434;305435;305436;305437;305438;305439;305440;305441;305442	410801;410802;410803;410804;410805;410806;410807;410808;410809	410807			7	
TILTTSHLFPYVK	1	Unmodified	1518.8446	0.84461556	3996	Q96BY6	DOCK10	Dedicator of cytokinesis protein 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.586	72.292	3	0.00023967	62734	160511_QHF_FH_JSI12i_3	76.522	68.612			0.70733	0.7325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70733	0.7325	NaN	1	1	Median	22768000	13010000	9757500	0	0	0	0	0	0	0	0	0	22768000	13010000	9757500	50486	3996	47524	305443	410810	410810			1	
TILVYCLNHYK	1	Unmodified	1422.733	0.73295662	5210	Q9P2D1	CHD7	Chromodomain-helicase-DNA-binding protein 7	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	66.244	56.776	3	0.014488	29827	160513_QHF_FH_JSI12Kac_6	53.432	45.707			1.4789	1.2736	13.716	3	0	Plateau	1.4789	1.2736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2197	1.1774	NaN	1	0	Median	0.87809	0.97524	NaN	1	0	Median	95695000	42885000	52811000	63020000	26124000	36896000	0	0	0	22411000	11837000	10574000	10264000	4923500	5340800	50487	5210	47525	305444;305445;305446	410811	410811			0	
TIMEEQLVLK	1	Unmodified	1202.6581	0.65806035	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	1		2	62.417	61.226	2	0.0007487	55493	160511_QHF_FH_JSI10i_1	78.098	44.72			0.92012	1.0029	47.415	3	3	Median	2.4182	2.0353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82312	0.91076	13.628	2	2	Median	129260000	57615000	71648000	26719000	8929900	17789000	0	0	0	0	0	0	102540000	48685000	53860000	50488	4777	47526	305447;305448;305449;305450	410812;410813;410814;410815	410814			4	
TIMEQFNPSLR	0	Unmodified	1334.6653	0.66527099	5478	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	58.731	58.469	2	0.023542	50236	160511_QHF_FH_JSI12i_3	48.741	20.999			1.1979	1.2062	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1979	1.2062	NaN	1	1	Median	36305000	18814000	17491000	0	0	0	0	0	0	0	0	0	36305000	18814000	17491000	50489	5478	47527	305451	410816	410816			1	
TIMHLMINNTK	1	Unmodified	1314.6788	0.67881256	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			8						8	4	4	4	4	51.037	45.618	2;3	1.134E-07	24967	160513_QHF_FH_JSI11Kac_6	93.011	80.703			1.0588	0.96848	16.398	15	0	Median	1.1379	0.92445	6.1645	4	0	Median	0.78001	0.91193	7.9378	4	0	Median	0.9859	0.94824	25.092	4	0	Median	1.0362	1.0668	11.746	3	0	Plateau	2764400000	1319100000	1445300000	777830000	370160000	407660000	813190000	451330000	361860000	854270000	355910000	498360000	319070000	141650000	177420000	50490	1711	47528	305452;305453;305454;305455;305456;305457;305458;305459;305460;305461;305462;305463;305464;305465;305466;305467	410817;410818;410819;410820;410821;410822;410823;410824;410825;410826;410827;410828;410829;410830;410831;410832;410833;410834;410835;410836;410837;410838;410839;410840;410841;410842;410843	410826			27	
TIMHLMINNTK	1	Oxidation (M)	1330.6737	0.67372718	1711	P50570	DNM2	Dynamin-2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.3			1						7	3	2	2	1	42.18	33.13	3	0.0019065	31516	160511_QHF_FH_JSI9i_3	50.914	42.81			0.98426	0.98056	4.7396	6	1	Median	1.078	0.92948	1.908	2	0	Median	0.82856	0.98514	1.8461	2	0	Median	1.0772	1.0506	NaN	1	1	Median	0.90739	0.98881	NaN	1	0	Median	107790000	55513000	52279000	44412000	20380000	24032000	49927000	27964000	21963000	5745300	2935300	2810000	7708100	4234300	3473800	50491	1711	47528	305468;305469;305470;305471;305472;305473;305474;305475	410844;410845;410846;410847;410848;410849;410850	410846		1391;1392	7	
TIMPGTR	0	Unmodified	774.40581	0.40580882	2513	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	17.699	17.149	2	0.01635	13563	160511_QHF_FH_JSI12i_3	63.21	5.0164			0.93231	1.0196	40.516	4	0	Median	1.9948	1.6508	NaN	1	0	Median	0.83153	0.96018	NaN	1	0	Median	0.66494	0.61647	NaN	1	0	Median	1.0453	1.0826	NaN	1	0	Median	310880000	147620000	163260000	45625000	15047000	30578000	66541000	36189000	30352000	15342000	9254900	6087400	183370000	87128000	96245000	50492	2513	47529	305476;305477;305478;305479	410851	410851			1	
TINEVENQILTR	0	Unmodified	1428.7573	0.75725712	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			2	3	3	3	54.398	51.857	2	1.3019E-41	44403	160511_QHF_FH_JSI12i_2	202.16	168.9			0.88913	0.84459	41.539	11	1	Median	0.6208	0.52495	23.825	2	0	Median	0.53114	0.62565	5.871	3	0	Median	1.579	1.6192	35.543	3	1	Plateau	1.0285	1.1091	8.2319	3	0	Median	3561500000	1843400000	1718100000	664770000	430870000	233910000	823920000	532900000	291010000	1268700000	482420000	786320000	804060000	397180000	406880000	50493	361;1021	47530	305480;305481;305482;305483;305484;305485;305486;305487;305488;305489;305490	410852;410853;410854;410855;410856;410857;410858;410859;410860;410861;410862;410863;410864;410865;410866;410867;410868	410855			17	
TINLYPLTNYTFGTK	1	Unmodified	1744.9036	0.903587	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							3	4	6	3	93.955	93.591	2;3	8.2544E-40	82362	160511_QHF_FH_JSI9i_2	200.44	134.94			1.0234	1.003	27.277	16	0	Median	1.0934	0.92184	9.384	3	0	Median	0.8208	0.9843	28.395	4	0	Median	1.037	1.0111	37.573	6	0	Median	0.9134	1.0251	17.852	3	0	Median	1039700000	563560000	476160000	140370000	64263000	76105000	268540000	170540000	97994000	399200000	210820000	188380000	231600000	117930000	113680000	50494	379	47531	305491;305492;305493;305494;305495;305496;305497;305498;305499;305500;305501;305502;305503;305504;305505;305506	410869;410870;410871;410872;410873;410874;410875;410876;410877;410878;410879;410880;410881;410882;410883;410884;410885;410886;410887;410888;410889;410890;410891;410892;410893;410894;410895;410896;410897;410898;410899;410900;410901;410902	410889			34	
TINLYYNNR	0	Unmodified	1169.5829	0.58292157	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9	6.52		2	2					2	2	2	3		3	46.53	40.632	2	0.0014761	20774	160513_QHF_FH_JSI10Kac_5	85.064	61.635			0.86014	0.79007	25.195	7	1	Median	0.99882	0.85516	21.626	2	1	Median	0.71454	0.84297	34.341	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96698	1.0154	32.412	3	0	Plateau	146700000	70433000	76269000	43181000	21808000	21372000	10400000	5038400	5361200	0	0	0	93122000	43587000	49535000	50495	2947	47532	305507;305508;305509;305510;305511;305512;305513;305514	410903;410904;410905;410906;410907;410908	410907			6	
TINQWVK	1	Unmodified	887.4865	0.48650199	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	32.885	32.127	2	0.011699	27414	160511_QHF_FH_JSI12i_2	60.961	25.081			0.38045	0.4477	149.24	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.47268	0.5811	NaN	1	1	Median	6.3463	6.0942	NaN	1	1	Median	0.34124	0.38239	NaN	1	1	Median	585960000	304980000	280980000	0	0	0	275960000	146280000	129680000	54935000	6135100	48800000	255070000	152560000	102510000	50496	1363	47533	305515;305516;305517;305518	410909;410910;410911;410912	410911			4	
TINQWVKGQTEGK	2	Acetyl (K)	1529.7838	0.78380622	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	55.425	44.692	2	0.00024529	25827	160513_QHF_FH_JSI11Kac_4	89.403	74.431			0.69353	0.75602	36.144	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87971	1.0589	NaN	1	0	Median	0.51183	0.51423	NaN	1	0	Median	0.69353	0.75602	NaN	1	0	Median	14839000	9715900	5123100	0	0	0	4837600	2409800	2427700	6152500	4975400	1177100	3849000	2330700	1518300	50497	1363	47534	305519;305520;305521;305522	410913;410914;410915;410916;410917;410918;410919	410915	1297		7	
TINVEFAK	1	Unmodified	920.49673	0.49673232	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				44.531	43.478	2	0.025863	37969	160511_QHF_FH_JSI9i_2	52.482	13.519			1.0658	0.90233	NaN	1	1	Median	1.0658	0.90233	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52478000	25403000	27074000	52478000	25403000	27074000	0	0	0	0	0	0	0	0	0	50498	2140	47535	305523	410920	410920			1	
TINVYPNFRPTPK	1	Unmodified	1545.8304	0.83036248	650	O95168	NDUFB4	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			52.884	51.312	3	0.00035703	42899	160511_QHF_FH_JSI10i_3	55.885	46.352			0.78108	0.75926	1.6119	2	0	Median	0.93081	0.76797	NaN	1	0	Median	0.65543	0.75066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87568000	49286000	38281000	40790000	20078000	20712000	46777000	29208000	17569000	0	0	0	0	0	0	50499	650	47536	305524;305525	410921	410921			1	
TINWTLLEK	1	Unmodified	1116.6179	0.61791009	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	74.481	73.895	2	0.0067481	64047	160511_QHF_FH_JSI12i_2	62.823	40.083			1.282	1.2723	30.429	5	3	Median	NaN	NaN	NaN	0	0	Median	1.8766	2.2959	NaN	1	1	Median	1.2493	1.2015	8.0929	2	1	Median	1.2473	1.2982	24.759	2	1	Median	263240000	86884000	176350000	0	0	0	44510000	15862000	28648000	110850000	33426000	77426000	107870000	37595000	70278000	50500	2232	47537	305526;305527;305528;305529;305530	410922;410923;410924;410925	410922			4	
TIPDSDISASSSWSDSTAAR	0	Unmodified	2052.9236	0.92360676	2268	Q08345	DDR1	Epithelial discoidin domain-containing receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.04	58.394	2	9.5625E-05	53011	160511_QHF_FH_JSI11i_1	85.457	71.741			0.93656	1.0608	24.01	3	2	Plateau	1.014	0.81563	NaN	1	1	Median	0.93656	1.0608	NaN	1	0	Median	1.3527	1.3174	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57202000	24451000	32751000	20137000	4419700	15718000	23203000	11757000	11446000	13862000	8275000	5586800	0	0	0	50501	2268	47538	305531;305532;305533;305534	410926;410927;410928;410929	410926			4	
TIPGTALVEMGDEYAVER	0	Unmodified	1949.9404	0.9404428	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	3	2	3	87.962	87.245	2;3	2.9552E-05	76802	160511_QHF_FH_JSI11i_2	62.658	52.024			1.2127	1.058	32.819	7	5	Median	1.2127	1.058	NaN	1	1	Median	1.0841	1.3056	49.602	2	2	Median	1.0222	1.0217	NaN	1	0	Median	1.4326	1.5773	38.008	3	2	Median	148400000	66825000	81571000	19090000	7742200	11348000	38479000	19897000	18583000	26932000	13408000	13525000	63895000	25779000	38116000	50502	3788	47539	305535;305536;305537;305538;305539;305540;305541;305542;305543;305544	410930;410931;410932;410933;410934;410935;410936;410937;410938;410939	410936			9	
TIPIKYPLK	2	Acetyl (K)	1113.6798	0.67978207	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.471							2	4		1	1	2	2	77.042	66.478	2	0.0088029	35504	160513_QHF_FH_JSI12Kac_4	63.565	34.404			0.8425	0.92677	25.208	5	0	Median	1.2617	1.0678	NaN	1	0	Median	0.8425	1.0088	NaN	1	0	Median	0.57389	0.56557	NaN	1	0	Median	0.80758	0.88153	7.0782	2	0	Median	92440000	58257000	34183000	7302900	3366900	3936100	19783000	12257000	7526400	39968000	27465000	12503000	25386000	15168000	10217000	50503	1520	47540	305545;305546;305547;305548;305549;305550	410940;410941;410942;410943;410944;410945;410946;410947;410948;410949;410950	410944	1544		11	
TIPLTDNTVIEEHLGK	1	Unmodified	1778.9414	0.94142907	3037	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	69.934	69.145	3	6.847E-06	61331	160511_QHF_FH_JSI10i_2	102.08	97.537			1.0065	1.0579	21.601	6	3	Median	1.226	1.0519	10.821	2	2	Median	0.92051	1.1357	NaN	1	0	Median	0.6327	0.64258	NaN	1	0	Median	1.0065	1.0579	0.71552	2	1	Median	330190000	184800000	145390000	111320000	57845000	53470000	61605000	27788000	33816000	84105000	55160000	28945000	73168000	44006000	29162000	50504	3037	47541	305551;305552;305553;305554;305555;305556	410951;410952;410953;410954;410955;410956;410957;410958	410957			8	
TIPNDPGFVVTLSNR	0	Unmodified	1628.8522	0.85222014	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	76.712	76.082	2;3	1.9601E-06	67708	160511_QHF_FH_JSI10i_2	138.94	112.89			0.99128	0.90286	50.019	7	1	Median	1.9665	1.6926	96.826	2	1	Median	0.73906	0.90286	NaN	1	0	Median	0.91852	0.86808	4.6829	2	0	Median	0.94336	0.99298	13.402	2	0	Median	339050000	157240000	181810000	63358000	25358000	38000000	48979000	25048000	23930000	118320000	58485000	59834000	108390000	48345000	60048000	50505	3922	47542	305557;305558;305559;305560;305561;305562;305563	410959;410960;410961;410962;410963;410964;410965;410966	410965			8	
TIPSWATLSASQLAR	0	Unmodified	1600.8573	0.85730551	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							2	3	2		86.433	85.755	2;3	0.00013865	71707	160511_QHF_FH_JSI10i_3	96.103	89.862			0.92612	0.91036	47.089	6	1	Median	1.1628	0.97479	25.625	2	0	Median	0.73601	0.87395	21.726	2	0	Median	0.60253	0.57098	82.241	2	1	Median	NaN	NaN	NaN	0	0	Median	154420000	81078000	73346000	58600000	29719000	28882000	64974000	31517000	33457000	30849000	19842000	11007000	0	0	0	50506	2927	47543	305564;305565;305566;305567;305568;305569;305570	410967;410968;410969;410970;410971;410972;410973;410974;410975;410976;410977;410978;410979;410980	410971			14	
TIPVILDGK	1	Unmodified	954.57498	0.57498264	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	63.988	63.264	2	0.00056389	54252	160511_QHF_FH_JSI12i_2	78.334	40.776			0.89126	1.0012	44.264	7	1	Median	1.1544	1.0012	NaN	1	0	Median	1.0275	1.2035	25.035	2	0	Median	0.87015	0.86058	5.5203	2	0	Median	1.3618	1.45	90.266	2	1	Median	244550000	125960000	118590000	33982000	14294000	19688000	53590000	29567000	24023000	96899000	53122000	43777000	60081000	28980000	31101000	50507	3720	47544	305571;305572;305573;305574;305575;305576;305577	410981;410982;410983;410984;410985;410986;410987;410988;410989;410990	410983			10	
TIPVQAFEVK	1	Unmodified	1130.6336	0.63356015	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	66.08	65.17	2	0.0054477	56049	160511_QHF_FH_JSI12i_2	56.013	28.759			1.4041	1.1763	NaN	1	0	Median	1.4041	1.1763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74157000	25937000	48220000	74157000	25937000	48220000	0	0	0	0	0	0	0	0	0	50508	280	47545	305578;305579	410991;410992	410991			2	
TIPVVFK	1	Unmodified	802.49528	0.49527576	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.737	2	4	3							2	3	2	2	60.414	59.547	2	0.01496	53861	160511_QHF_FH_JSI10i_1	64.776	44.894			1.0056	1.0107	18.537	9	1	Median	1.0865	0.90536	0.12569	2	0	Median	0.75103	0.93079	17.539	3	1	Median	1.0788	1.0611	5.7626	2	0	Median	1.192	1.249	18.582	2	0	Median	1318200000	627340000	690840000	232940000	102820000	130120000	317750000	180270000	137480000	349760000	177010000	172750000	417730000	167240000	250490000	50509	1262	47546	305580;305581;305582;305583;305584;305585;305586;305587;305588	410993;410994;410995;410996;410997;410998;410999;411000;411001;411002;411003;411004	410998			12	
TIPWLEDRVPQK	1	Unmodified	1480.8038	0.80381338	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		3	6							3	4	2		65.62	64.585	2;3	8.4793E-08	53027	160511_QHF_FH_JSI9i_3	132.76	104.9			0.48874	0.47681	58.113	8	1	Median	0.4632	0.38231	7.2	3	0	Median	0.45435	0.52338	16.363	3	0	Median	1.5312	1.5097	3.687	2	1	Median	NaN	NaN	NaN	0	0	Median	1210700000	690220000	520470000	408650000	266480000	142170000	307850000	214490000	93365000	494180000	209250000	284930000	0	0	0	50510	361	47547	305589;305590;305591;305592;305593;305594;305595;305596;305597	411005;411006;411007;411008;411009;411010;411011;411012;411013;411014;411015;411016;411017;411018;411019;411020;411021;411022;411023;411024;411025	411018			21	
TIPYSDK	1	Unmodified	822.41233	0.41233399	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	24.089	23.451	2	0.013531	20759	160511_QHF_FH_JSI12i_1	69.998	53.072			0.55037	0.65387	120.54	5	2	Median	0.54625	0.45922	200.79	2	1	Median	0.55037	0.65387	NaN	1	0	Median	0.49163	0.47092	NaN	1	0	Median	2.0303	2.1598	NaN	1	1	Median	1142500000	428180000	714370000	169840000	93535000	76302000	176610000	102250000	74352000	149230000	85023000	64207000	646880000	147360000	499510000	50511	2780	47548	305598;305599;305600;305601;305602	411026;411027;411028;411029;411030	411027			5	
TIQDLVSLK	1	Unmodified	1015.5914	0.59136099	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	3	2	59.42	57.391	2	0.00010732	49800	160511_QHF_FH_JSI11i_2	93.098	34.494			0.82145	0.88562	68.334	8	1	Median	1.0135	0.89076	NaN	1	0	Median	0.71737	0.85416	0.77953	2	0	Median	0.86093	0.88051	71.113	3	1	Median	1.8778	2.0415	117.15	2	0	Median	798030000	429550000	368480000	130360000	70514000	59850000	220800000	127480000	93321000	279310000	155560000	123760000	167550000	75997000	91554000	50512	5285	47549	305603;305604;305605;305606;305607;305608;305609;305610	411031;411032;411033;411034;411035;411036;411037;411038;411039	411038			9	
TIQEADQDGDSAISFTEFVK	1	Unmodified	2200.0172	0.017172792	4299	Q99653	CHP1	Calcineurin B homologous protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			83.661	83.514	3	0.036999	75770	160511_QHF_FH_JSI10i_1	26.993	19.039			1.1313	1.2907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.2907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21606000	7790700	13815000	0	0	0	21606000	7790700	13815000	0	0	0	0	0	0	50513	4299	47550	305611	411040	411040			1	
TIQEMQQK	1	Unmodified	1004.4961	0.4960804	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	14.48	11.795	2	0.000735	9971	160511_QHF_FH_JSI10i_1	98.933	48.807			0.67282	0.71472	57.665	6	4	Median	0.35926	0.29463	NaN	1	1	Median	0.53762	0.62589	NaN	1	0	Median	0.88281	0.85702	6.91	2	2	Median	0.54051	0.57839	94.522	2	1	Median	1443000000	923270000	519740000	455180000	309280000	145910000	376070000	238970000	137110000	383420000	208550000	174870000	228330000	166480000	61856000	50514	361	47551	305612;305613;305614;305615;305616;305617	411041;411042;411043;411044;411045;411046	411044			6	
TIQEMQQK	1	Oxidation (M)	1020.491	0.49099502	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	8.3501	7.9892	2	0.0050365	3872	160511_QHF_FH_JSI12i_1	73.26	33.157			0.45366	0.46249	120.91	3	1	Median	0.17154	0.13912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5879	1.5615	NaN	1	1	Median	0.45366	0.46249	NaN	1	0	Median	287850000	179470000	108380000	82645000	65866000	16778000	0	0	0	117210000	54130000	63080000	87997000	59474000	28523000	50515	361	47551	305618;305619;305620	411047;411048	411048		141	2	
TIQESSNLNEEDTGVTNR	0	Unmodified	2005.9189	0.91885573	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	33.745	33.133	2	3.4756E-32	29702	160511_QHF_FH_JSI11i_1	144.68	133.47			0.79153	0.79171	23.709	3	3	Median	0.79153	0.64492	NaN	1	1	Median	0.67622	0.79171	NaN	1	1	Median	1.0629	1.0348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43755000	23481000	20274000	14515000	8898800	5616600	14758000	9656000	5102300	14481000	4926300	9554700	0	0	0	50516	2948	47552	305621;305622;305623;305624;305625	411049;411050;411051;411052;411053	411050			5	
TIQFVDWCPTGFK	1	Unmodified	1597.7599	0.75989966	4359	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	90.066	89.427	2;3	7.4167E-41	78712	160511_QHF_FH_JSI11i_2	202.65	190.44			0.89835	0.85494	58.633	8	3	Median	1.8126	1.5338	63.469	2	1	Median	0.63251	0.74116	1.0048	2	1	Median	0.66521	0.6655	6.8185	2	1	Median	2.0234	2.1683	21.529	2	0	Median	718050000	362720000	355330000	74649000	32292000	42357000	170110000	102030000	68081000	241480000	148970000	92506000	231810000	79430000	152380000	50517	4359	47553	305626;305627;305628;305629;305630;305631;305632;305633	411054;411055;411056;411057;411058;411059;411060;411061;411062;411063;411064;411065;411066;411067	411063			14	
TIQGDEEDLR	0	Unmodified	1174.5466	0.54659564	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.65	4		1			3				2	2	2	2	23.093	19.638	2;3	5.7426E-14	19059	160511_QHF_FH_JSI12i_1	157.66	144.08			1.0341	1.072	121.09	8	1	Median	0.26728	0.21713	249.47	2	1	Median	1.0922	1.2893	1.7669	2	0	Median	1.008	0.97569	12.608	2	0	Median	0.97046	1.052	3.3574	2	0	Median	1222300000	698410000	523920000	372540000	226110000	146430000	268580000	144290000	124290000	295210000	168160000	127050000	286000000	159850000	126150000	50518	1838	47554	305634;305635;305636;305637;305638;305639;305640;305641	411068;411069;411070;411071;411072;411073;411074;411075;411076;411077;411078;411079;411080;411081;411082	411071			15	
TIQGHLQSENFK	1	Unmodified	1400.7048	0.70482762	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	4.47		6	8						2	2	6	5	3	27.438	25.745	2;3	6.1584E-08	21954	160511_QHF_FH_JSI11i_3	105.41	84.375			0.89745	1.069	63.454	13	8	Median	0.91966	0.80367	50.365	2	2	Median	1.8673	2.285	60.187	4	2	Linear	1.0115	0.9689	89.357	4	2	Median	0.89745	0.92014	57.013	3	2	Median	1341200000	689270000	651890000	39099000	15720000	23379000	273630000	111740000	161890000	530140000	289760000	240390000	498290000	272050000	226230000	50519	238	47555	305642;305643;305644;305645;305646;305647;305648;305649;305650;305651;305652;305653;305654;305655;305656;305657	411083;411084;411085;411086;411087;411088;411089;411090;411091;411092;411093;411094;411095;411096;411097;411098;411099;411100;411101	411084			19	
TIQGLIDFIK	1	Unmodified	1146.6649	0.66486028	609	O94817	ATG12	Ubiquitin-like protein ATG12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	90.496	90.053	2	1.4392E-05	79976	160511_QHF_FH_JSI10i_2	101.11	49.11			0.91949	0.96213	10.937	5	1	Median	0.92564	0.8024	NaN	1	0	Median	0.80554	0.9842	NaN	1	0	Median	1.015	0.99953	5.3927	2	1	Median	0.80086	0.84152	NaN	1	0	Median	86852000	47076000	39776000	14470000	7851900	6618400	21205000	12170000	9034800	37440000	19232000	18208000	13738000	7822100	5915600	50520	609	47556	305658;305659;305660;305661;305662	411102;411103;411104;411105;411106;411107;411108;411109	411109			8	
TIQLTHEQQLILNHK	1	Unmodified	1815.0003	0.0002813566	3664	Q8NFZ0	FBXO18	F-box only protein 18	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.796	48.558	4	0.038353	41580	160511_QHF_FH_JSI12i_3	23.008	18.459			0.9147	0.92315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9147	0.92315	NaN	1	0	Median	35542000	15168000	20374000	0	0	0	0	0	0	0	0	0	35542000	15168000	20374000	50521	3664	47557	305663	411110;411111;411112	411111			3	
TIQMGSFR	0	Unmodified	938.46439	0.46438634	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	5	2	4	5						2	3	3	5	2	39.491	37.925	2	4.9894E-05	31620	160511_QHF_FH_JSI10i_3	135.77	103.81			0.95932	1.0499	23.886	12	3	Median	1.0788	0.91746	38.544	3	1	Median	0.9208	1.1038	12.157	3	0	Median	1.2589	1.2489	28.407	4	1	Median	0.90173	0.9695	4.1913	2	1	Median	3129100000	1569500000	1559600000	1011100000	476930000	534160000	938890000	519650000	419240000	693260000	313860000	379400000	485820000	259020000	226800000	50522	5508	47558	305664;305665;305666;305667;305668;305669;305670;305671;305672;305673;305674;305675;305676	411113;411114;411115;411116;411117;411118;411119;411120;411121;411122;411123;411124;411125;411126;411127;411128	411117			16	
TIQMGSFR	0	Oxidation (M)	954.4593	0.45930096	5508	Q9Y2B0	CNPY2	Protein canopy homolog 2	yes	yes	0	0	1	0	By MS/MS			By MS/MS	3	0			3							2			1	18.655	18.067	2	0.0033757	30959	160511_QHF_FH_JSI9i_3	85.212	73.843			1.3076	1.2065	3.7036	2	0	Median	1.4886	1.2386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1487	1.1754	NaN	1	0	Median	70287000	30740000	39547000	33337000	12416000	20921000	0	0	0	0	0	0	36950000	18324000	18626000	50523	5508	47558	305677;305678;305679	411129;411130;411131;411132	411130		2684	4	
TIQNSSVSPTSSSSSSSSTGETQTQSSSR	0	Unmodified	2891.2864	0.28642437	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	21.045	20.264	2;3	1.9238E-17	17490	160511_QHF_FH_JSI10i_1	151.23	133.82			0.82198	0.8479	40.744	4	3	Median	1.1009	0.90183	66.868	2	1	Median	0.92074	0.98852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73381	0.72729	NaN	1	1	Median	67811000	36434000	31378000	42239000	18087000	24152000	9980200	7436500	2543700	0	0	0	15592000	10910000	4682200	50524	3264	47559	305680;305681;305682;305683	411133;411134;411135;411136	411134			4	
TIQQDSNK	1	Unmodified	932.45632	0.45632407	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	4.9942	4.6525	2	0.0025582	2612	160511_QHF_FH_JSI12i_1	87.181	41.165			0.57784	0.58947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57784	0.58947	NaN	1	1	Median	32688000	19258000	13430000	0	0	0	0	0	0	0	0	0	32688000	19258000	13430000	50525	2667	47560	305684;305685	411137;411138	411137			2	
TIQTIALITYLMEHK	1	Unmodified	1773.9699	0.96989243	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6			4						9	4	3	3	3	97.467	91.844	2;3	1.1285E-139	46924	160513_QHF_FH_JSI12Kac_6	243.69	216.48			1.0015	0.99905	15.461	12	0	Median	1.0231	0.84352	1.1582	3	0	Median	0.84324	0.99271	21.618	3	0	Median	1.1066	1.0422	12.244	3	0	Median	1.0768	1.0081	7.8492	3	0	Plateau	6509900000	3109700000	3400200000	1275000000	633770000	641230000	1615600000	797230000	818370000	2641400000	1217100000	1424400000	977850000	461650000	516200000	50526	1736;1737	47561	305686;305687;305688;305689;305690;305691;305692;305693;305694;305695;305696;305697;305698	411139;411140;411141;411142;411143;411144;411145;411146;411147;411148;411149;411150;411151;411152;411153;411154;411155;411156	411150			18	
TIQTIALITYLMEHK	1	Oxidation (M)	1789.9648	0.96480705	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	88.255	78.869	3	9.4955E-12	43884	160513_QHF_FH_JSI11Kac_6	130.01	118.73			0.78495	0.79448	8.8989	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88764	0.84608	NaN	1	0	Median	0.69414	0.74603	NaN	1	1	Median	156640000	93689000	62948000	0	0	0	0	0	0	65318000	38872000	26447000	91319000	54818000	36501000	50527	1736;1737	47561	305699;305700	411157;411158	411157		1421	2	
TIQTIALITYLMEHKR	1	Unmodified	1930.071	0.071003459	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	1		By MS/MS			16	0									1		1			87.898	82.18	4	6.4894E-05	46446	160513_QHF_FH_JSI10Kac_6	79.013	68.159			0.33846	0.39956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33846	0.39956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34835000	22077000	12758000	0	0	0	34835000	22077000	12758000	0	0	0	0	0	0	50528	1736;1737	47562	305701	411159	411159			1	
TIQTIVFLYSLYK	1	Unmodified	1587.8912	0.8912314	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.667	86.294	2	1.7665E-40	46581	160513_QHF_FH_JSI12Kac_6	197.3	156.8			1.2314	1.0538	6.7171	4	0	Linear	1.1359	0.98068	NaN	1	0	Median	0.86937	1.0211	NaN	1	0	Median	1.1886	1.1415	NaN	1	0	Median	1.0356	1.0875	NaN	1	0	Median	894160000	409170000	484990000	237610000	118450000	119170000	198800000	102720000	96085000	256370000	88625000	167750000	201380000	99386000	101990000	50529	2318	47563	305702;305703;305704;305705	411160;411161;411162;411163;411164;411165;411166	411165			7	
TIQTPIGSTWNTQR	0	Unmodified	1601.8162	0.81616898	4472;2961	Q5TAP6;Q9BVJ6	UTP14C;UTP14A	U3 small nucleolar RNA-associated protein 14 homolog C;U3 small nucleolar RNA-associated protein 14 homolog A	no	no	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		56.662	55.652	2	0.00053586	49222	160511_QHF_FH_JSI11i_3	69.01	45.159			1.0035	0.87041	NaN	1	1	Median	1.0035	0.87041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14626000	7046600	7579500	14626000	7046600	7579500	0	0	0	0	0	0	0	0	0	50530	2961;4472	47564	305706;305707;305708	411167;411168;411169	411167			3	
TIQVDNTDAEGR	0	Unmodified	1317.6161	0.61607219	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	20.895	20.598	2	2.6781E-06	17769	160511_QHF_FH_JSI11i_1	125.23	86.443			0.921	0.90367	26.014	3	2	Median	NaN	NaN	NaN	0	0	Median	0.63284	0.74373	NaN	1	1	Median	0.921	0.90367	NaN	1	0	Median	1.1896	1.245	NaN	1	1	Median	514660000	300360000	214300000	0	0	0	146120000	85021000	61094000	127710000	74947000	52765000	240830000	140400000	100440000	50531	1313	47565	305709;305710;305711	411170;411171;411172	411170			3	
TIQVENSHLILTGAGALNK	1	Unmodified	1978.0847	0.084739268	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	1	2	66.349	65.83	2;3	1.1273E-18	58522	160511_QHF_FH_JSI11i_3	162.76	135.95			1.089	1.0198	16.314	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.089	1.2586	NaN	1	1	Median	0.96833	0.91458	NaN	1	0	Median	1.1256	1.1371	NaN	1	0	Median	396900000	212010000	184900000	0	0	0	10908000	4030400	6877200	191620000	107710000	83908000	194380000	100270000	94111000	50532	2348	47566	305712;305713;305714;305715;305716	411173;411174;411175;411176;411177;411178;411179	411173			7	
TIQVSDFVR	0	Unmodified	1063.5662	0.56620887	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	3	1	58.415	57.671	2	5.5641E-05	50641	160511_QHF_FH_JSI9i_2	97.635	45.848			1.0885	0.94684	28.85	5	2	Median	1.0885	0.92912	NaN	1	0	Median	0.58438	0.70117	NaN	1	1	Median	1.178	1.1476	27.194	2	1	Median	1.206	1.3596	NaN	1	0	Median	661820000	342170000	319650000	150450000	62588000	87861000	149430000	96919000	52512000	247410000	126800000	120620000	114520000	55869000	58654000	50533	676	47567	305717;305718;305719;305720;305721;305722;305723	411180;411181;411182;411183;411184;411185;411186;411187	411182			7	
TIRPMDMETIEASVMK	1	Unmodified	1850.894	0.89402665	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	2	2	80.351	79.668	2;3	2.0886E-30	70915	160511_QHF_FH_JSI11i_3	163.51	146.43			1.0046	0.98656	14.444	8	1	Median	1.336	1.1087	26.725	2	0	Median	0.888	1.0699	8.49	2	0	Median	1.066	0.99191	3.7392	2	0	Median	0.85525	0.88236	6.9545	2	1	Median	1907900000	897780000	1010100000	241560000	96130000	145430000	506740000	286370000	220370000	918830000	396850000	521980000	240730000	118430000	122300000	50534	990	47568	305724;305725;305726;305727;305728;305729;305730;305731	411188;411189;411190;411191;411192;411193;411194;411195;411196;411197;411198;411199;411200;411201;411202;411203;411204;411205;411206;411207	411189			20	
TIRPMDMETIEASVMK	1	Oxidation (M)	1866.8889	0.88894127	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			5								3	2		69.151	68.27	3	7.7601E-05	57587	160511_QHF_FH_JSI10i_3	87.932	86.015			1.1151	1.3081	52.126	5	3	Median	NaN	NaN	NaN	0	0	Median	0.95939	1.1451	12.547	3	1	Plateau	1.0818	1.0155	99.07	2	2	Median	NaN	NaN	NaN	0	0	Median	298020000	137690000	160340000	0	0	0	137250000	76507000	60745000	160770000	61180000	99591000	0	0	0	50535	990	47568	305732;305733;305734;305735;305736	411208;411209;411210;411211;411212	411211		569;570	5	
TIRYPDPLIK	1	Unmodified	1214.7023	0.70230842	2013	P62701;Q8TD47	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.82		4	7					1	3	5	4	3	3	54.709	51.474	2;3	3.7037E-06	45221	160511_QHF_FH_JSI9i_2	103.91	69.949			0.9945	1.0371	10.225	15	1	Median	1.1731	1.01	11.657	5	0	Median	0.89947	1.052	2.3466	4	0	Median	1.1165	1.0756	3.1542	3	0	Median	0.79712	0.80232	9.2321	3	1	Plateau	13362000000	6350100000	7011900000	3288000000	1414600000	1873400000	4129700000	2147900000	1981800000	4464700000	2042900000	2421800000	1479500000	744620000	734890000	50536	2013	47569	305737;305738;305739;305740;305741;305742;305743;305744;305745;305746;305747;305748;305749;305750;305751	411213;411214;411215;411216;411217;411218;411219;411220;411221;411222;411223;411224;411225;411226;411227;411228;411229;411230;411231;411232;411233;411234;411235;411236;411237;411238;411239;411240;411241;411242;411243;411244;411245;411246;411247;411248;411249;411250;411251;411252;411253;411254;411255;411256;411257;411258;411259;411260;411261	411242			49	
TIRYPDPVIK	1	Unmodified	1200.6867	0.68665836	1204	P22090	RPS4Y1	40S ribosomal protein S4, Y isoform 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	52.34	51.248	3	0.024205	44959	160511_QHF_FH_JSI11i_3	31.597	17.661			0.20989	0.24691	28.073	5	5	Median	0.41372	0.35376	NaN	1	1	Median	0.18749	0.22406	13.735	2	2	Median	0.24945	0.24896	NaN	1	1	Median	0.14793	0.16589	NaN	1	1	Median	257910000	200860000	57054000	37519000	26579000	10941000	134720000	107320000	27394000	51321000	38745000	12576000	34355000	28211000	6143900	50537	1204	47570	305752;305753;305754;305755;305756;305757	411262;411263;411264;411265;411266;411267	411262			6	
TISAKYAEER	1	Acetyl (K)	1208.6037	0.60371659	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		37.986	28.385	2	0.014268	17459	160513_QHF_FH_JSI11Kac_4	64.04	48.378			0.24488	0.26234	153.05	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6626	0.77424	NaN	1	0	Median	0.0905	0.088893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10820000	9042700	1777300	0	0	0	3075400	1787400	1288000	7744600	7255200	489380	0	0	0	50538	1436	47571	305758;305759	411268;411269;411270	411270	1406		3	
TISALAIAALAEAATPYGIESFDSVLK	1	Unmodified	2721.4477	0.44766345	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	103.55	103.51	3;4	5.3295E-33	91219	160511_QHF_FH_JSI11i_2	154.86	148.98			0.883	0.91795	13.985	8	2	Median	1.0014	0.84946	22.249	2	0	Median	0.75839	0.92822	5.2191	2	0	Median	1.0345	0.99107	22.751	2	0	Median	0.88489	0.88797	8.343	2	2	Median	318790000	157430000	161360000	90738000	44659000	46079000	62914000	37554000	25359000	106030000	45345000	60689000	59107000	29876000	29231000	50539	542	47572	305760;305761;305762;305763;305764;305765;305766;305767	411271;411272;411273;411274;411275;411276;411277;411278;411279;411280;411281;411282	411276			12	
TISDGTISASK	1	Unmodified	1078.5506	0.55061839	2934	Q5T0N5	FNBP1L	Formin-binding protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	21.516	20.865	2	0.00071924	17841	160511_QHF_FH_JSI9i_1	81.771	64.531			2.1592	2.5665	35.325	3	3	Median	1.8613	1.5625	NaN	1	1	Median	2.1592	2.5665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9857	3.0955	NaN	1	1	Median	198300000	71808000	126490000	63973000	21579000	42394000	59772000	26548000	33225000	0	0	0	74555000	23682000	50873000	50540	2934	47573	305768;305769;305770	411283;411284;411285	411285			3	
TISETIER	0	Unmodified	947.49238	0.49237523	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.02	1	4	1				3	1		2	2	2	4	25.015	20.661	2	1.3608E-05	18049	160511_QHF_FH_JSI10i_2	140.09	114.35			1.0901	1.1417	16.929	9	0	Median	1.2815	1.0719	NaN	1	0	Median	0.87155	1.0588	12.666	2	0	Median	1.0232	1.0315	14.354	2	0	Median	1.1376	1.2504	22.746	4	0	Median	3425200000	1707900000	1717300000	573360000	267940000	305420000	544090000	281020000	263070000	843040000	422210000	420830000	1464700000	736690000	728010000	50541	1282	47574	305771;305772;305773;305774;305775;305776;305777;305778;305779;305780	411286;411287;411288;411289;411290;411291;411292;411293;411294;411295;411296;411297;411298;411299;411300	411300			15	
TISFDIPPQEILTK	1	Unmodified	1600.8712	0.87122424	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	91.355	90.739	2	4.5277E-05	82554	160511_QHF_FH_JSI11i_1	77.64	58.398			1.2848	1.1524	16.067	2	2	Median	1.5798	1.2911	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0449	1.0286	NaN	1	1	Median	29394000	14321000	15073000	18048000	8046500	10001000	0	0	0	0	0	0	11346000	6274200	5072100	50542	1286	47575	305781;305782;305783	411301;411302;411303	411301			3	
TISHFHYTTWPDFGVPESPASFLNFLFK	1	Unmodified	3284.5971	0.59712165	1125	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.07	90.574	3;4	6.9181E-35	53695	160513_QHF_FH_JSI10Kac_6	146.15	133.16			0.96062	1.0163	20.192	4	0	Median	0.89477	0.75036	NaN	1	0	Median	0.91696	1.0891	15.239	2	0	Median	1.1266	1.0562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1013400000	564920000	448510000	180450000	97891000	82561000	632370000	372230000	260150000	200600000	94804000	105800000	0	0	0	50543	1125	47576	305784;305785;305786;305787	411304;411305;411306;411307;411308;411309	411308			6	
TISHVIIGLK	1	Unmodified	1079.6703	0.67028001	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.44		3	8					5	8	7	6	6	5	51.889	46.853	2;3	6.554E-11	39071	160511_QHF_FH_JSI10i_3	168.27	102.19			0.99454	1.007	35.472	21	1	Median	1.2605	1.0171	61.176	7	1	Median	0.82235	0.96516	8.2152	4	0	Median	0.96083	0.91279	5.759	5	0	Median	1.0335	1.0862	10.023	5	0	Median	10714000000	4936600000	5777300000	2809400000	1216100000	1593200000	2516200000	1395400000	1120800000	2482600000	1032900000	1449700000	2905700000	1292100000	1613600000	50544	5496	47577	305788;305789;305790;305791;305792;305793;305794;305795;305796;305797;305798;305799;305800;305801;305802;305803;305804;305805;305806;305807;305808;305809;305810;305811	411310;411311;411312;411313;411314;411315;411316;411317;411318;411319;411320;411321;411322;411323;411324;411325;411326;411327;411328;411329;411330;411331;411332;411333;411334;411335;411336;411337;411338;411339;411340;411341;411342;411343;411344;411345;411346;411347;411348;411349;411350;411351;411352;411353;411354;411355;411356;411357;411358;411359;411360;411361;411362;411363;411364	411321			54	
TISLTDFLAEDGGTGGGSTYVSK	1	Unmodified	2275.0856	0.085586708	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.45	0.498	6	5								4	2	2	3	93.431	92.974	2;3	3.3358E-59	84562	160511_QHF_FH_JSI12i_1	256.45	242.77			0.98712	0.97185	17.499	9	2	Median	0.98554	0.8191	8.1958	2	0	Median	0.84689	1.0237	8.9603	2	1	Median	0.9952	0.96737	0.65348	2	0	Median	1.0104	1.1133	17.209	3	1	Median	393330000	199250000	194090000	57186000	34897000	22289000	104690000	46708000	57978000	91492000	45432000	46060000	139970000	72211000	67759000	50545	1237	47578	305812;305813;305814;305815;305816;305817;305818;305819;305820;305821;305822	411365;411366;411367;411368;411369;411370;411371;411372;411373;411374;411375;411376;411377;411378;411379;411380;411381;411382;411383;411384;411385;411386	411373			22	
TISPMVMDAK	1	Unmodified	1091.5355	0.53550237	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.799	5	4	3							4	3	3	2	47.188	46.267	2	1.6999E-07	39563	160511_QHF_FH_JSI12i_2	118.71	78.608			1.0513	1.0727	23.81	12	5	Median	1.2521	1.0351	17.309	4	3	Median	1.0212	1.1637	25.611	3	1	Median	1.0484	1.0775	35.884	3	1	Plateau	0.9409	1.0299	0.38059	2	0	Median	2626500000	1230300000	1396200000	641410000	279630000	361770000	614100000	288880000	325220000	814370000	403100000	411270000	556600000	258710000	297890000	50546	1139	47579	305823;305824;305825;305826;305827;305828;305829;305830;305831;305832;305833;305834	411387;411388;411389;411390;411391;411392;411393;411394;411395;411396;411397;411398;411399;411400;411401;411402;411403;411404;411405;411406;411407	411390			21	
TISQAVNKK	2	Unmodified	987.57129	0.57129425	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	7.8177	7.4986	3	0.00011528	5340	160511_QHF_FH_JSI10i_3	89.08	42.921			0.86916	0.82065	30.142	5	3	Median	1.1802	0.95818	NaN	1	0	Median	0.8355	0.95186	54.049	2	2	Median	0.86916	0.82065	NaN	1	0	Median	0.71916	0.70809	NaN	1	1	Median	930980000	540230000	390750000	143240000	65630000	77611000	297810000	186650000	111160000	272220000	146730000	125490000	217700000	141210000	76492000	50547	5507	47580	305835;305836;305837;305838;305839	411408;411409;411410;411411;411412;411413;411414	411411			7	
TISQHQISTSIITSTQK	1	Unmodified	1871.9953	0.99525556	798	P03915	MT-ND5	NADH-ubiquinone oxidoreductase chain 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.79			2					1	4	3	1	1	2	53.018	45.898	3	7.3789E-08	25182	160513_QHF_FH_JSI10Kac_6	112.82	102.76			1.0247	0.92921	23.979	7	1	Median	1.1752	0.96801	7.2335	3	0	Median	0.74714	0.90786	NaN	1	0	Median	0.93237	0.90288	NaN	1	0	Median	0.72101	0.77159	51.133	2	1	Median	193470000	100460000	93009000	93909000	40335000	53575000	26649000	15290000	11359000	21921000	13662000	8258400	50987000	31170000	19817000	50548	798	47581	305840;305841;305842;305843;305844;305845;305846	411415;411416;411417;411418;411419;411420;411421;411422;411423;411424;411425;411426;411427;411428	411427			14	
TISQLVHAFQTTEAQHLFLQAFWQTMNR	0	Unmodified	3345.6717	0.67170036	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.516	90.796	3	2.7381E-49	52627	160513_QHF_FH_JSI10Kac_6	171.99	161.57			0.99532	1.1985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99532	1.1985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	295490000	177840000	117650000	0	0	0	295490000	177840000	117650000	0	0	0	0	0	0	50549	1871	47582	305847	411429	411429			1	
TISQLVHAFQTTEAQHLFLQAFWQTMNR	0	Oxidation (M)	3361.6666	0.66661498	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			94.511	88.791	4	9.0791E-09	51032	160513_QHF_FH_JSI10Kac_6	100.97	85.568			0.62861	0.75256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62861	0.75256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91725000	72077000	19648000	0	0	0	91725000	72077000	19648000	0	0	0	0	0	0	50550	1871	47582	305848	411430	411430		1558	1	
TISQTSAPVWDESASFLIR	0	Unmodified	2107.0586	0.058584097	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	4	10								3	4	4	3	93.796	93.427	2;3	2.773E-19	82154	160511_QHF_FH_JSI11i_2	169.04	137.81			1.2472	1.3022	10.604	12	6	Median	1.4757	1.2793	15.256	2	1	Median	1.157	1.3487	14.643	4	2	Median	1.2633	1.2297	6.3164	3	1	Median	1.196	1.304	8.3119	3	2	Median	323550000	137550000	186010000	53825000	21231000	32594000	90749000	43306000	47443000	81020000	32705000	48315000	97959000	40304000	57656000	50551	4399	47583	305849;305850;305851;305852;305853;305854;305855;305856;305857;305858;305859;305860;305861;305862	411431;411432;411433;411434;411435;411436;411437;411438;411439;411440;411441;411442;411443;411444	411442			14	
TISSSLAVVDLIDAIQPGCINYDLVK	1	Unmodified	2803.4677	0.46774696	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		102.64	102.56	3	5.8905E-21	90343	160511_QHF_FH_JSI11i_2	120.85	117.58			0.89705	1.0075	6.4723	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85737	1.0547	NaN	1	0	Median	0.93857	0.96245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	195990000	98187000	97806000	0	0	0	58827000	32411000	26416000	137170000	65776000	71390000	0	0	0	50552	1039	47584	305863;305864	411445	411445			1	
TISSYTAFSR	0	Unmodified	1131.556	0.55603811	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	2	1	1	47.34	39.594	2	0.014862	21536	160513_QHF_FH_JSI11Kac_6	49.418	36.83			1.1553	1.1738	47.466	5	0	Median	0.81008	0.69046	NaN	1	0	Median	0.98463	1.1517	24.606	2	0	Median	1.196	1.1738	NaN	1	0	Median	2.2923	2.4891	NaN	1	0	Median	135230000	69326000	65907000	8020500	5366800	2653700	108920000	54319000	54601000	13755000	7473400	6281900	4537600	2167100	2370500	50553	3101	47585	305865;305866;305867;305868;305869	411446;411447;411448	411447			3	
TISTSDPAEVLVK	1	Unmodified	1358.7293	0.72931103	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	63.46	59.057	2	1.5177E-30	51960	160511_QHF_FH_JSI9i_1	209.85	190.06			0.96307	0.98847	24.608	7	1	Median	0.96307	0.79579	NaN	1	0	Median	0.77774	0.91755	16.417	2	0	Median	1.1326	1.0985	14.921	2	0	Median	0.76366	0.81669	44.943	2	1	Median	1899900000	1003400000	896470000	484200000	237270000	246920000	431370000	267920000	163450000	561190000	300850000	260350000	423110000	197370000	225740000	50554	3323	47586	305870;305871;305872;305873;305874;305875;305876	411449;411450;411451;411452;411453;411454;411455;411456;411457;411458	411457			10	
TISVILFLNK	1	Unmodified	1146.7012	0.70124579	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	91.48	87.118	2	3.8144E-44	43829	160513_QHF_FH_JSI9Kac_6	210.37	188.29			0.94493	0.94891	19.064	8	0	Median	0.92472	0.79184	4.8041	2	0	Median	0.86563	1.0084	10.65	2	0	Median	1.2395	1.16	26.361	2	0	Median	0.9875	1.009	14.221	2	0	Median	1511900000	760520000	751340000	295450000	141200000	154260000	531030000	300660000	230370000	428390000	181400000	246990000	256990000	137260000	119730000	50555	2048	47587	305877;305878;305879;305880;305881;305882;305883;305884	411459;411460;411461;411462;411463;411464;411465;411466;411467;411468;411469;411470;411471;411472;411473;411474;411475;411476	411470			18	
TISVIMKNQTPTK	2	Acetyl (K)	1501.8174	0.81741453	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		62.882	51.821	2	0.013898	29300	160513_QHF_FH_JSI11Kac_4	78.908	54.053			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50556	5743	47588	305885	411477	411477	3543		1	
TITATGVLFVR	0	Unmodified	1176.6867	0.68665836	2181	Q01974	ROR2	Tyrosine-protein kinase transmembrane receptor ROR2	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	16	0									3	1		1	1	76.163	67.044	2	0.0003005	36510	160513_QHF_FH_JSI11Kac_6	89.029	69.758			1.066	0.98846	24.255	3	0	Plateau	1.1752	1.0164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0096	0.98846	NaN	1	0	Median	1.3915	1.5246	NaN	1	0	Median	95728000	44703000	51025000	38089000	17061000	21028000	0	0	0	44557000	21821000	22736000	13082000	5821000	7261200	50557	2181	47589	305886;305887;305888	411478	411478			1	
TITAYHESGHAIIAYYTK	1	Unmodified	2038.016	0.015991	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	2	2	2	5	58.494	50.204	3;4	2.5774E-33	26542	160513_QHF_FH_JSI9Kac_6	163.45	154.85			0.83604	0.99375	43.087	9	2	Median	0.72064	0.62324	13.407	2	0	Median	0.78929	0.93457	8.6835	2	0	Median	1.4372	1.4006	21.932	2	1	Median	1.1732	1.2625	54.237	3	1	Median	392260000	225040000	167220000	113400000	62040000	51363000	170150000	108260000	61897000	41935000	17258000	24677000	66768000	37488000	29280000	50558	4261	47590	305889;305890;305891;305892;305893;305894;305895;305896;305897;305898;305899	411479;411480;411481;411482;411483;411484;411485;411486;411487;411488;411489;411490;411491;411492;411493;411494;411495;411496;411497	411482			19	
TITDVINIGIGGSDLGPLMVTEALK	1	Unmodified	2526.3615	0.36149098	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	102.32	102.22	2;3	5.2413E-272	90008	160511_QHF_FH_JSI11i_2	363.39	343.28			0.84497	0.90641	16.628	8	2	Median	1.1446	0.97097	4.869	2	0	Median	0.60064	0.73672	26.481	2	0	Median	0.93682	0.9508	11.821	2	0	Median	0.7676	0.85697	10.766	2	2	Median	2047000000	1058100000	988970000	374290000	178480000	195810000	315600000	187300000	128300000	1166500000	585960000	580590000	190600000	106330000	84272000	50559	856	47591	305900;305901;305902;305903;305904;305905;305906;305907	411498;411499;411500;411501;411502;411503;411504;411505;411506;411507;411508	411506			11	
TITDVINIGIGGSDLGPLMVTEALKPYSSGGPR	1	Unmodified	3327.7384	0.73844252	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		101.89	101.83	3	1.8713E-131	90373	160511_QHF_FH_JSI10i_2	266.62	250.47			0.94729	0.93638	17.056	4	0	Median	0.94157	0.8154	NaN	1	0	Median	0.95305	1.1584	NaN	1	0	Median	0.95416	0.93638	15.575	2	0	Median	NaN	NaN	NaN	0	0	Median	872370000	453870000	418500000	285300000	145100000	140200000	261460000	160310000	101150000	325600000	148460000	177150000	0	0	0	50560	856	47592	305908;305909;305910;305911	411509;411510;411511;411512;411513	411513			5	
TITGFQTHTTPVLLAHGER	0	Unmodified	2078.0909	0.090887278	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							3	1			54.758	53.189	3;4	3.9633E-14	43547	160511_QHF_FH_JSI9i_3	140.2	130.64			1.1102	0.88778	10.822	4	4	Median	1.1845	0.94816	7.6156	3	3	Median	0.67566	0.7603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1371500000	597920000	773600000	926500000	352810000	573690000	445020000	245110000	199920000	0	0	0	0	0	0	50561	2370	47593	305912;305913;305914;305915	411514;411515;411516;411517;411518	411516			5	
TITGNSAAVITPFK	1	Unmodified	1418.7769	0.77692993	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.84		5						1		1	1	3	1	61.716	60.805	2	3.3295E-17	53039	160511_QHF_FH_JSI11i_2	135.21	99.985			0.96107	1.1058	42.771	4	3	Median	2.1354	1.8707	NaN	1	1	Median	1.0134	1.2503	NaN	1	1	Median	0.654	0.67579	NaN	1	1	Median	0.91147	0.9779	NaN	1	0	Median	221940000	106370000	115570000	45801000	11600000	34201000	40067000	15212000	24854000	91086000	59040000	32045000	44985000	20518000	24466000	50562	4525	47594	305916;305917;305918;305919;305920;305921	411519;411520;411521;411522;411523;411524;411525	411523			7	
TITLEVEPSDTIENVK	1	Unmodified	1786.92	0.92002493	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.22	8	6	7			2				4	7	5	7	72.542	71.128	2;3	8.7873E-148	64871	160511_QHF_FH_JSI10i_1	342.7	317.84			0.95695	0.97044	12.12	23	4	Median	1.138	0.97734	9.2858	4	0	Median	0.811	0.92911	17.999	7	2	Median	0.99158	0.95739	0.81613	5	0	Median	0.95363	1.006	9.5095	7	2	Median	45175000000	21384000000	23790000000	5584700000	2159800000	3424900000	18722000000	9556700000	9164800000	10663000000	4865200000	5797600000	10206000000	4802800000	5403000000	50563	2042	47595	305922;305923;305924;305925;305926;305927;305928;305929;305930;305931;305932;305933;305934;305935;305936;305937;305938;305939;305940;305941;305942;305943;305944	411526;411527;411528;411529;411530;411531;411532;411533;411534;411535;411536;411537;411538;411539;411540;411541;411542;411543;411544;411545;411546;411547;411548;411549;411550;411551;411552;411553;411554;411555;411556;411557;411558;411559;411560;411561;411562;411563;411564;411565;411566;411567;411568;411569;411570;411571;411572;411573;411574;411575;411576;411577;411578;411579;411580;411581;411582;411583;411584;411585;411586;411587;411588;411589;411590;411591;411592;411593;411594;411595;411596;411597;411598;411599;411600	411568			74	
TITLKNSDCTIICDK	2	Unmodified	1780.8699	0.86992039	5760				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	71.624	71.132	3	0.00037657	64736	160511_QHF_FH_JSI10i_1	66.533	17.829	+		1.183	1.154	5.9256	5	0	Median	1.4385	1.1899	NaN	1	0	Median	0.89742	1.0449	NaN	1	0	Median	1.183	1.154	0	2	0	Median	1.1665	1.2219	NaN	1	0	Median	1033700000	403220000	630480000	152840000	42790000	110050000	240980000	104430000	136550000	441190000	180250000	260940000	198700000	75756000	122950000	50564	5760	47596	305945;305946;305947;305948;305949	411601;411602;411603;411604;411605;411606;411607	411605			7	
TITMETSDDLLFSK	1	Unmodified	1599.7702	0.77018957	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			77.522	77.359	2	0.0031468	70160	160511_QHF_FH_JSI10i_1	57.164	42.745			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50565	486	47597	305950	411608	411608			1	
TITMLDEQK	1	Unmodified	1077.5376	0.53761086	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	38.182	37.435	2	5.0538E-08	33608	160511_QHF_FH_JSI11i_1	144.12	92.335			1.3781	1.2653	28.096	6	3	Median	1.392	1.1862	5.873	2	2	Median	1.5098	1.7796	44.988	2	1	Median	1.389	1.3433	NaN	1	0	Median	1.1933	1.2281	NaN	1	0	Median	516950000	233740000	283220000	98539000	42170000	56369000	159240000	78804000	80433000	160330000	71343000	88990000	98847000	41420000	57427000	50566	101	47598	305951;305952;305953;305954;305955;305956	411609;411610;411611;411612;411613;411614;411615	411609			7	
TITQIEEFSDVNEGEK	1	Unmodified	1837.8582	0.85815295	2606	Q15022	SUZ12	Polycomb protein SUZ12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	60.967	60.424	2	1.7225E-08	54756	160511_QHF_FH_JSI11i_1	134.61	122.25			0.65916	0.6528	31.354	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5465	0.52299	NaN	1	1	Median	0.79503	0.81482	NaN	1	1	Median	40240000	28621000	11619000	0	0	0	0	0	0	21366000	15492000	5873500	18875000	13129000	5745900	50567	2606	47599	305957;305958	411616;411617	411616			2	
TITSEDVAEMHNILK	1	Unmodified	1699.8451	0.84508585	1619	P48426	PIP4K2A	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	64.919	63.619	3	0.0017162	54665	160511_QHF_FH_JSI12i_2	59.709	52.827			2.0476	2.2718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0476	2.2718	NaN	1	1	Median	28324000	13120000	15204000	0	0	0	0	0	0	0	0	0	28324000	13120000	15204000	50568	1619	47600	305959	411618	411618			1	
TITSSYYR	0	Unmodified	989.48181	0.48181054	2020;4642	Q9H0U4;P62820	RAB1B;RAB1A	Ras-related protein Rab-1B;Ras-related protein Rab-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.6	2	4	4				1	4	4	4	6	4	5	25.69	21.315	2	5.1862E-07	12736	160513_QHF_FH_JSI11Kac_5	141.78	141.78			1.0379	1.0102	14.852	18	2	Median	1.1896	1.0053	9.8925	4	0	Median	0.92214	1.1064	14.571	5	1	Median	1.1818	1.0075	13.824	4	1	Linear	0.92649	1.01	19.302	5	0	Median	5804800000	2734900000	3069900000	929970000	376510000	553460000	1583200000	809640000	773540000	1792800000	833690000	959070000	1498900000	715090000	783830000	50569	4642;2020	47601	305960;305961;305962;305963;305964;305965;305966;305967;305968;305969;305970;305971;305972;305973;305974;305975;305976;305977;305978	411619;411620;411621;411622;411623;411624;411625;411626;411627;411628;411629;411630;411631;411632;411633;411634;411635;411636;411637;411638;411639;411640;411641;411642;411643;411644	411635			26	
TITSTYYR	0	Unmodified	1003.4975	0.4974606	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		1	2	2	2	25.386	22.831	2	0.00018193	19925	160511_QHF_FH_JSI10i_2	122.13	59.414			1.0658	1.0871	12.218	5	0	Median	1.0658	0.90305	NaN	1	0	Median	0.84413	1.0161	13.615	2	0	Median	1.0743	1.0871	NaN	1	0	Median	1.0762	1.1903	NaN	1	0	Median	750760000	380480000	370280000	116930000	47199000	69732000	158710000	83915000	74793000	297610000	157610000	140000000	177510000	91756000	85751000	50570	2649	47602	305979;305980;305981;305982;305983;305984;305985	411645;411646;411647;411648;411649;411650;411651;411652;411653;411654;411655	411654			11	
TITSYPYR	0	Unmodified	999.50255	0.50254598	5825				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		30.459	29.87	2	0.001083	26137	160511_QHF_FH_JSI10i_2	94.262	5.1196	+		0.96234	1.0185	10.498	4	0	Median	1.2596	1.0664	NaN	1	0	Median	0.85404	1.0745	NaN	1	0	Median	0.96234	0.91346	8.8757	2	0	Median	NaN	NaN	NaN	0	0	Median	414790000	224060000	190730000	94784000	43474000	51311000	95672000	57763000	37910000	224340000	122830000	101510000	0	0	0	50571	5825	47603	305986;305987;305988;305989	411656;411657;411658;411659	411659			4	
TITTAYYR	0	Unmodified	987.50255	0.50254598	1927;1730;3909	P61006;P20337;O95716;P20336;Q96E17;P51153;Q92930	RAB8A;RAB3B;RAB3D;RAB3A;RAB3C;RAB13;RAB8B	Ras-related protein Rab-8A;Ras-related protein Rab-3B;Ras-related protein Rab-3D;Ras-related protein Rab-3A;Ras-related protein Rab-3C;Ras-related protein Rab-13;Ras-related protein Rab-8B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.22		4						5	4	3	4	3	3	33.835	27.292	2	0.00016356	23201	160511_QHF_FH_JSI11i_2	123.69	123.69			0.92585	1.0059	11.058	12	1	Median	1.2034	1.0231	6.1406	3	0	Plateau	0.82025	1.0203	8.8479	3	1	Median	0.94079	0.96353	15.688	3	0	Median	0.91115	1.0233	13.617	3	0	Median	1529000000	769840000	759170000	340850000	171120000	169740000	406800000	221620000	185180000	476990000	240670000	236320000	304360000	136430000	167930000	50572	1927;1730;3909	47604	305990;305991;305992;305993;305994;305995;305996;305997;305998;305999;306000;306001;306002	411660;411661;411662;411663;411664;411665;411666;411667;411668;411669;411670;411671;411672;411673;411674;411675;411676;411677	411667			18	
TITVALADGGRPDNTGR	0	Unmodified	1712.8806	0.88056015	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.36		9	5				1	4	4	4	7	7	5	44.362	39.994	2;3	1.6201E-16	22294	160513_QHF_FH_JSI11Kac_5	128.74	93.001			1.0285	1.043	14.278	23	5	Median	1.5028	1.1855	6.0862	4	0	Linear	1.0307	1.1728	15.304	7	3	Median	1.016	1.0282	8.2412	7	2	Median	0.86286	0.93074	10.863	5	0	Median	5010300000	2558100000	2452300000	902210000	413260000	488950000	2478200000	1288700000	1189600000	1552200000	814970000	737190000	77747000	41180000	36567000	50573	1664	47605	306003;306004;306005;306006;306007;306008;306009;306010;306011;306012;306013;306014;306015;306016;306017;306018;306019;306020;306021;306022;306023;306024;306025	411678;411679;411680;411681;411682;411683;411684;411685;411686;411687;411688;411689;411690;411691;411692;411693;411694;411695;411696;411697;411698;411699;411700;411701;411702;411703;411704;411705;411706;411707;411708;411709;411710;411711;411712	411698			35	
TITYFDSQR	0	Unmodified	1129.5404	0.54038805	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	38.294	37.393	2	0.0039802	31956	160511_QHF_FH_JSI11i_2	57.96	35.22			0.8835	0.90802	5.2472	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87485	0.87495	NaN	1	0	Median	0.89223	0.94234	NaN	1	0	Median	69294000	37461000	31833000	0	0	0	0	0	0	45691000	24349000	21342000	23603000	13112000	10491000	50574	4724	47606	306026;306027	411713;411714	411714			2	
TITYQAVPSEVPNEEPK	1	Unmodified	1900.9418	0.941823	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.382	54.724	2	1.4175E-15	48453	160511_QHF_FH_JSI9i_1	198.14	179.51			1.0098	0.98436	9.904	4	0	Median	1.1076	0.91294	NaN	1	0	Median	0.99493	1.1507	NaN	1	0	Median	1.0249	1.0067	NaN	1	0	Median	0.95195	0.96247	NaN	1	0	Median	786650000	390830000	395820000	218340000	101510000	116830000	203110000	108610000	94505000	183610000	94552000	89054000	181590000	86157000	95432000	50575	4535	47607	306028;306029;306030;306031	411715;411716;411717;411718;411719;411720;411721;411722;411723	411722			9	
TIVAINK	1	Unmodified	757.46979	0.46978929	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.47	2	5					2	4		2	5	3	3	32.565	27.707	2	0.0036275	23437	160511_QHF_FH_JSI12i_2	103.29	16.42			0.86774	0.99625	80.619	13	6	Median	0.55796	0.47302	118.99	2	1	Median	0.85486	0.99625	102.41	5	3	Median	0.85311	0.86302	15.22	3	1	Plateau	0.87868	1.0075	30.703	3	1	Plateau	1633900000	877500000	756430000	218530000	119700000	98836000	688210000	393180000	295030000	404740000	208450000	196290000	322450000	156170000	166270000	50576	1041	47608	306032;306033;306034;306035;306036;306037;306038;306039;306040;306041;306042;306043;306044	411724;411725;411726;411727;411728;411729;411730;411731;411732;411733;411734;411735;411736;411737;411738;411739;411740	411727			17	
TIVEEVQDGK	1	Unmodified	1116.5663	0.56626845	65	Q04695;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2	KRT17	Keratin, type I cytoskeletal 17	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					2	2	1	28.924	25.242	2	2.1175E-25	22493	160511_QHF_FH_JSI12i_1	185.81	146.85		+	0.60794	0.63244	33.147	5	0	Median	NaN	NaN	NaN	0	0	Median	0.48704	0.5728	31.538	2	0	Median	0.79728	0.77146	49.938	2	0	Median	0.60794	0.63244	NaN	1	0	Median	1379000000	827010000	551970000	0	0	0	406830000	285350000	121480000	492750000	299800000	192950000	479400000	241860000	237540000	50577	65	47609	306045;306046;306047;306048;306049	411741;411742;411743;411744	411741			4	
TIVEMENSGLVHMLK	1	Unmodified	1699.8637	0.8637128	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.077	71.78	3	0.00015878	62248	160511_QHF_FH_JSI12i_3	85.909	73.076			1.4688	1.4756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4688	1.4756	NaN	1	1	Median	87574000	32505000	55070000	0	0	0	0	0	0	0	0	0	87574000	32505000	55070000	50578	2455	47610	306050	411745	411745			1	
TIVFVETK	1	Unmodified	935.53278	0.53278348	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.68	6.29	4	4	4			2	3	3	2	5	6	5	6	52.665	47.758	2	0.00010359	26181	160513_QHF_FH_JSI11Kac_5	124.98	69.307			0.92788	0.96837	12.461	21	0	Median	1.2091	0.99317	12.877	4	0	Median	0.80247	0.95318	16.471	6	0	Median	0.98644	0.97094	11.135	5	0	Median	0.92505	0.94779	11.843	6	0	Median	3258400000	1677700000	1580700000	582880000	292230000	290650000	846420000	459460000	386960000	1020900000	544580000	476300000	808210000	381410000	426810000	50579	1128	47611	306051;306052;306053;306054;306055;306056;306057;306058;306059;306060;306061;306062;306063;306064;306065;306066;306067;306068;306069;306070;306071;306072	411746;411747;411748;411749;411750;411751;411752;411753;411754;411755;411756;411757;411758;411759;411760;411761;411762;411763;411764;411765;411766;411767;411768;411769;411770;411771;411772;411773;411774;411775;411776;411777	411770			32	
TIVHESERLEALK	1	Unmodified	1523.8308	0.83075641	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								3	2	1	34.023	33.374	2;3	0.0046514	28695	160511_QHF_FH_JSI11i_3	54.524	47.323			0.98497	1.0472	75.936	6	4	Median	NaN	NaN	NaN	0	0	Median	1.512	1.7471	80.217	3	2	Median	0.95777	0.90519	2.0414	2	1	Median	0.67166	0.67843	NaN	1	1	Median	399930000	183850000	216090000	0	0	0	134560000	52367000	82195000	209820000	101440000	108390000	55547000	30042000	25504000	50580	4411	47612	306073;306074;306075;306076;306077;306078	411778;411779;411780;411781;411782;411783;411784	411778			7	
TIVHYSPNLVFSGIEAIQK	1	Unmodified	2115.1364	0.13644049	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	1	3	90.843	90.457	3;4	2.4599E-06	80361	160511_QHF_FH_JSI11i_3	91.475	75.709			1.1179	1.0659	14.749	6	2	Median	1.1221	0.91134	NaN	1	0	Median	0.87486	1.0055	NaN	1	0	Median	1.2402	1.1707	NaN	1	0	Median	1.1137	1.0972	15.987	3	2	Median	690170000	339920000	350250000	26612000	11264000	15348000	50436000	27153000	23282000	193170000	83627000	109540000	419950000	217870000	202080000	50581	1873	47613	306079;306080;306081;306082;306083;306084;306085	411785;411786;411787;411788;411789;411790;411791;411792;411793;411794;411795;411796	411785			12	
TIVINYAK	1	Unmodified	920.53312	0.53311783	1512	P41214	EIF2D	Eukaryotic translation initiation factor 2D	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.6	5.2		4						1		1	1	2	1	43.023	40.133	2	0.0050968	34277	160511_QHF_FH_JSI12i_2	66.682	39.72			0.97747	1.0941	7.1968	5	0	Median	1.3173	1.0941	NaN	1	0	Median	0.95005	1.1692	NaN	1	0	Median	1.0361	1.0279	9.6126	2	0	Median	0.95877	1.0922	NaN	1	0	Median	214650000	111450000	103210000	35195000	16239000	18955000	46147000	23712000	22435000	80364000	43174000	37190000	52949000	28322000	24627000	50582	1512	47614	306086;306087;306088;306089;306090	411797;411798;411799;411800	411797			4	
TIVITSHPGQIVK	1	Unmodified	1391.8136	0.81364979	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.61		8	8					2	10	8	7	7	6	46.957	42.673	2;3	6.4118E-13	22675	160513_QHF_FH_JSI9Kac_6	125.03	101.28			0.95959	0.95031	15.772	26	4	Median	1.0841	0.91764	13.097	7	1	Median	0.86578	1.0351	12.481	6	0	Median	0.91302	0.9368	15.788	7	2	Median	0.94496	0.9973	17.132	6	1	Median	8118800000	3800600000	4318200000	1048300000	465320000	582970000	1465000000	752130000	712900000	2630300000	1261000000	1369300000	2975200000	1322200000	1653000000	50583	1376	47615	306091;306092;306093;306094;306095;306096;306097;306098;306099;306100;306101;306102;306103;306104;306105;306106;306107;306108;306109;306110;306111;306112;306113;306114;306115;306116;306117;306118	411801;411802;411803;411804;411805;411806;411807;411808;411809;411810;411811;411812;411813;411814;411815;411816;411817;411818;411819;411820;411821;411822;411823;411824;411825;411826;411827;411828;411829;411830;411831;411832;411833;411834;411835;411836;411837;411838;411839;411840;411841;411842;411843;411844;411845;411846;411847;411848;411849;411850;411851;411852;411853;411854	411838			54	
TIVITSHPGQIVKHGDIK	2	Acetyl (K)	1984.1106	0.11056009	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		58.865	49.145	3;4	0.00020914	26551	160513_QHF_FH_JSI11Kac_6	70.942	61.688			0.20385	0.20001	1.1797	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20385	0.20001	1.1797	2	1	Median	NaN	NaN	NaN	0	0	Median	52693000	44113000	8579500	0	0	0	0	0	0	52693000	44113000	8579500	0	0	0	50584	1376	47616	306119;306120	411855;411856	411855	1320		2	
TIVLQESIGK	1	Unmodified	1086.6285	0.62847478	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	50.057	48.659	2	0.0030977	41562	160511_QHF_FH_JSI12i_2	70.908	47.48			0.96383	1.0509	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96383	1.0509	NaN	1	1	Median	57795000	30023000	27772000	0	0	0	0	0	0	0	0	0	57795000	30023000	27772000	50585	1462	47617	306121	411857	411857			1	
TIVMGASFR	0	Unmodified	980.51134	0.51133653	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.52		6	2					5	2	4	4	3	4	52.857	46.838	2	1.3924E-08	24864	160513_QHF_FH_JSI9Kac_6	146.81	92.285			1.0097	1.0259	13.008	13	3	Median	1.2158	1.0228	1.024	4	0	Median	0.86282	1.0124	10.016	4	0	Median	1.0686	1.0707	11.066	2	1	Median	0.99127	1.0985	28.053	3	2	Median	4060300000	2034500000	2025800000	1501300000	659760000	841580000	1987900000	1062600000	925340000	440790000	246920000	193870000	130220000	65233000	64989000	50586	1471	47618	306122;306123;306124;306125;306126;306127;306128;306129;306130;306131;306132;306133;306134;306135;306136	411858;411859;411860;411861;411862;411863;411864;411865;411866;411867;411868;411869;411870;411871;411872;411873;411874;411875;411876;411877;411878;411879	411877			22	
TIVMGASFR	0	Oxidation (M)	996.50625	0.50625115	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	2.99			1				2	6	8	5	4	4	4	41.081	31.976	2	0.00011146	17587	160513_QHF_FH_JSI11Kac_6	101.43	63.785			1.088	1.0565	13.647	17	2	Median	1.2033	0.83952	12.283	5	0	Linear	0.95846	1.135	9.8892	4	0	Median	1.0857	1.0532	21.07	4	2	Median	0.98551	1.0763	8.6546	4	0	Median	544300000	267050000	277250000	220890000	101320000	119570000	134130000	67092000	67034000	129730000	65858000	63875000	59554000	32781000	26773000	50587	1471	47618	306137;306138;306139;306140;306141;306142;306143;306144;306145;306146;306147;306148;306149;306150;306151;306152;306153	411880;411881;411882;411883;411884;411885;411886;411887;411888;411889;411890;411891;411892;411893;411894;411895	411883		1143	16	
TIVQLENEIYQIK	1	Unmodified	1589.8665	0.86647322	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	80.255	79.489	2	1.3791E-30	70111	160511_QHF_FH_JSI9i_2	188.06	127.54			0.85388	1.0507	68.808	7	5	Median	0.75493	0.63183	86.005	2	1	Median	0.44155	0.52742	97.465	2	2	Median	1.2264	1.2802	NaN	1	0	Median	0.99665	1.13	48.572	2	2	Median	402650000	246900000	155750000	62092000	34428000	27664000	161240000	118710000	42530000	77320000	41585000	35735000	102010000	52184000	49822000	50588	585	47619	306154;306155;306156;306157;306158;306159;306160;306161;306162	411896;411897;411898;411899;411900;411901;411902;411903;411904;411905;411906	411903			11	
TIVQLKPR	1	Acetyl (K)	995.61277	0.61276513	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		54.651	43.856	2	0.048031	24237	160513_QHF_FH_JSI11Kac_5	56.011	22.46			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3891200	3891200	0	0	0	0	0	0	0	3891200	3891200	0	0	0	0	50589	5458	47620	306163	411907	411907			1	
TIVSIGDPK	1	Unmodified	928.52295	0.52294707	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	38.775	38.074	2	6.0033E-06	33617	160511_QHF_FH_JSI9i_1	113.7	78.888			0.95677	0.88203	12.709	3	0	Plateau	0.95677	0.78575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98726	0.98278	NaN	1	0	Median	0.74706	0.79161	NaN	1	0	Median	277500000	131630000	145870000	53167000	25778000	27389000	0	0	0	133160000	56311000	76850000	91170000	49537000	41632000	50590	2366	47621	306164;306165;306166	411908;411909;411910;411911;411912	411912			5	
TIVTDVFQGSMR	0	Unmodified	1352.6758	0.67583567	2856	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	66.389	65.459	2	3.3126E-05	57048	160511_QHF_FH_JSI11i_2	105.86	78.121			0.83094	0.88767	8.1842	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92715	0.94056	NaN	1	0	Median	0.74471	0.83776	NaN	1	0	Median	251960000	133770000	118190000	0	0	0	0	0	0	165350000	83458000	81893000	86612000	50312000	36300000	50591	2856	47622	306167;306168	411913;411914;411915	411915			3	
TIVTNEYMK	1	Unmodified	1097.5427	0.54269624	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	37.149	36.305	2	5.1108E-05	32921	160511_QHF_FH_JSI12i_1	98.033	31.412			0.83898	0.8949	26.136	9	4	Median	0.78266	0.65936	39.006	2	1	Median	0.82004	0.99706	0.45141	2	0	Median	0.98456	0.98211	13.152	2	1	Median	0.83244	0.85453	25.597	3	2	Median	1253400000	765220000	488140000	185180000	130580000	54608000	315680000	211720000	103960000	333530000	188380000	145150000	418970000	234550000	184430000	50592	1636	47623	306169;306170;306171;306172;306173;306174;306175;306176;306177;306178	411916;411917;411918;411919;411920;411921;411922;411923;411924;411925	411919			10	
TIVTNEYMK	1	Oxidation (M)	1113.5376	0.53761086	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	1	0				By MS/MS	14	0							1						1	32.512	23.626	2	0.027687	14339	160513_QHF_FH_JSI12Kac_4	43.246	26.47			0.88826	0.98197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88826	0.98197	NaN	1	0	Median	1396200	681320	714860	0	0	0	0	0	0	0	0	0	1396200	681320	714860	50593	1636	47623	306179	411926	411926			1	
TIVYWGIGR	0	Unmodified	1063.5815	0.581465	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.17	6.26		1	3						2	2	4			68.831	65.459	2	0.0045543	54669	160511_QHF_FH_JSI10i_3	65.038	31.241			0.75678	0.82944	28.673	6	5	Median	1.276	1.031	29.088	2	2	Median	0.63555	0.77537	25.767	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2041800000	1291000000	750810000	169260000	66108000	103150000	1872600000	1224900000	647650000	0	0	0	0	0	0	50594	1778	47624	306180;306181;306182;306183;306184;306185	411927;411928;411929;411930;411931;411932;411933	411927			7	
TIWEVPER	0	Unmodified	1028.5291	0.52909508	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				50.263	49.213	2	0.0080688	43084	160511_QHF_FH_JSI9i_2	63.565	33.38			1.4355	1.2982	NaN	1	0	Median	1.4355	1.2982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47074000	20644000	26430000	47074000	20644000	26430000	0	0	0	0	0	0	0	0	0	50595	2736	47625	306186	411934	411934			1	
TIWGVLGLGAFGFQLK	1	Unmodified	1705.9556	0.955563	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	98.087	89.667	2;3	9.121E-206	50813	160513_QHF_FH_JSI11Kac_6	316.83	285.94			1.0394	1.0874	21.044	8	1	Median	1.1267	0.94393	18.618	2	0	Median	0.80482	0.93062	23.419	2	0	Median	1.0708	1.0191	12.449	2	1	Median	1.2668	1.3387	18.295	2	0	Median	1322200000	657210000	664970000	306120000	156380000	149730000	302160000	162510000	139650000	447150000	213260000	233890000	266750000	125060000	141700000	50596	738	47626	306187;306188;306189;306190;306191;306192;306193;306194	411935;411936;411937;411938;411939;411940;411941;411942;411943;411944;411945;411946;411947;411948;411949;411950	411935			16	
TIWTQGPSPR	0	Unmodified	1141.588	0.58800695	4485	Q9BVV7	TIMM21	Mitochondrial import inner membrane translocase subunit Tim21	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				21.612	20.654	2	0.06026	17618	160511_QHF_FH_JSI9i_2	41.029	3.4707			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15135000	0	15135000	15135000	0	15135000	0	0	0	0	0	0	0	0	0	50597	4485	47627	306195	411951	411951			1	
TIYAGNALCTVK	1	Unmodified	1309.67	0.67002202	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.99	4	4	1				1	1		2	2	4	3	49.778	47.165	2	3.5525E-05	40387	160511_QHF_FH_JSI12i_2	104.82	92.034			1.0385	1.0118	33.549	11	3	Median	1.1321	0.92677	12.413	2	0	Median	0.86031	1.0441	21.476	2	0	Median	0.77736	0.77705	26.258	4	2	Median	1.3256	1.462	25.099	3	1	Median	1211300000	579760000	631540000	110030000	47944000	62087000	264040000	140460000	123590000	479440000	239380000	240070000	357780000	151980000	205800000	50598	1041	47628	306196;306197;306198;306199;306200;306201;306202;306203;306204;306205;306206	411952;411953;411954;411955;411956;411957;411958;411959;411960;411961;411962;411963;411964;411965;411966;411967;411968	411955			17	
TIYFFGDK	1	Unmodified	989.48583	0.48583328	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.28	6.31	1	6	4				1	4	2	5	6	3	4	67.804	63.437	2	0.0035931	55808	160511_QHF_FH_JSI9i_2	71.379	29.27			0.94811	1.0102	76.151	18	6	Median	1.2428	1.0945	107.46	5	2	Median	0.80011	0.96514	44.427	6	2	Median	1.0153	0.9996	16.39	3	0	Median	1.3095	1.4324	91.325	4	2	Median	1557700000	711260000	846430000	337600000	116400000	221200000	426650000	231030000	195620000	375960000	184130000	191830000	417480000	179700000	237780000	50599	275	47629	306207;306208;306209;306210;306211;306212;306213;306214;306215;306216;306217;306218;306219;306220;306221;306222;306223;306224	411969;411970;411971;411972;411973;411974;411975;411976;411977;411978;411979;411980;411981;411982;411983;411984;411985	411975			17	
TIYNLVDMER	0	Unmodified	1252.6122	0.61217279	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		62.675	61.989	2	0.00083231	53913	160511_QHF_FH_JSI11i_2	76.228	45.154			0.5409	0.61349	55.345	2	2	Median	NaN	NaN	NaN	0	0	Median	0.33418	0.41481	NaN	1	1	Median	0.87552	0.90734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63821000	43043000	20777000	0	0	0	28044000	22421000	5622500	35777000	20622000	15155000	0	0	0	50600	5039	47630	306225;306226;306227	411986;411987;411988	411987			3	
TIYTPGSTVLYR	0	Unmodified	1369.7242	0.72416608	780;70	CON__Q2UVX4;P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	no	no	0	0	0	0				By MS/MS	3	0			1										1	58.393	58.132	2	0.060491	49956	160511_QHF_FH_JSI12i_3	52.278	29.538		+	1.3583	1.4491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3583	1.4491	NaN	1	1	Median	20649000	6866000	13783000	0	0	0	0	0	0	0	0	0	20649000	6866000	13783000	50601	70;780	47631	306228	411989	411989			1	
TIYTSPIK	1	Unmodified	921.51713	0.51713341	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		35.624	34.891	2	0.019499	30601	160511_QHF_FH_JSI10i_2	45.68	19.786			0.59756	0.55453	32.386	2	2	Median	0.51207	0.44103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69732	0.69723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	87642000	39934000	47707000	34211000	16401000	17811000	0	0	0	53430000	23533000	29897000	0	0	0	50602	2677	47632	306229;306230;306231	411990;411991;411992	411992			3	
TKADSVPGTYRK	2	Acetyl (K)	1363.7096	0.70957864	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	1	0	0	2			By MS/MS	By matching	15	0								2				1	1	27.283	17.939	3	0.0020893	11517	160513_QHF_FH_JSI11Kac_5	72.891	37.214			0.64804	0.67339	2.4631	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70065	0.68522	NaN	1	0	Median	0.59938	0.66177	NaN	1	0	Median	21635000	12561000	9074200	0	0	0	0	0	0	11537000	5745000	5791500	10099000	6816200	3282700	50603	2595	47633	306232;306233	411993	411993	2572		1	
TKDEPQRETLK	2	Unmodified	1343.7045	0.70449327	1197	P21926	CD9	CD9 antigen	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.7	0.458		3	7							3	5	2		7.5547	7.1534	2;3;4	5.2886E-07	4992	160511_QHF_FH_JSI10i_3	97.911	84.232			0.7075	0.831	19.194	10	0	Median	1.16	0.9868	12.865	3	0	Plateau	0.65494	0.75496	9.5872	5	0	Median	0.82657	0.78312	20.833	2	0	Median	NaN	NaN	NaN	0	0	Median	2584500000	1430400000	1154000000	443850000	192480000	251370000	1752900000	1031500000	721420000	387690000	206450000	181240000	0	0	0	50604	1197	47634	306234;306235;306236;306237;306238;306239;306240;306241;306242;306243	411994;411995;411996;411997;411998;411999;412000;412001;412002;412003	411997			9	
TKDEYLINSQTTEHIVK	2	Unmodified	2018.032	0.032034995	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.16		6	4						4	4	2	6	2	45.79	42.693	3;4	1.2307E-30	37477	160511_QHF_FH_JSI11i_3	188.27	165.17			1.014	0.95821	16.905	14	2	Median	1.1665	0.98972	13.423	4	0	Median	0.74923	0.90306	6.7166	2	0	Median	1.014	0.9858	22.667	6	2	Median	0.84298	0.87154	5.2372	2	0	Median	2062000000	1143100000	918900000	153970000	68108000	85858000	275740000	148980000	126760000	682810000	367670000	315140000	949530000	558380000	391150000	50605	4983	47635	306244;306245;306246;306247;306248;306249;306250;306251;306252;306253;306254;306255;306256;306257	412004;412005;412006;412007;412008;412009;412010;412011;412012;412013;412014;412015;412016;412017;412018;412019;412020;412021;412022;412023;412024;412025;412026;412027;412028;412029;412030	412006			27	
TKDGVVEITGK	2	Acetyl (K)	1187.6398	0.63976774	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		47.872	38.486	2	0.0040585	21393	160513_QHF_FH_JSI11Kac_3	69.01	40.612			0.23178	0.22275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23178	0.22275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4377900	3491900	885960	0	0	0	0	0	0	4377900	3491900	885960	0	0	0	50606	814	47636	306258	412031	412031	460;461		1	
TKEEALELINGYIQK	2	Unmodified	1747.9356	0.93561541	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	1				By MS/MS	3	0			3										3	74.212	73.922	2;3	7.5828E-06	64109	160511_QHF_FH_JSI12i_3	137.59	113.21			1.4017	1.4451	2.8028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4017	1.4451	2.8028	2	2	Median	154510000	58632000	95879000	0	0	0	0	0	0	0	0	0	154510000	58632000	95879000	50607	2433	47637	306259;306260;306261	412032;412033;412034	412032			3	
TKEEKPEAK	3	Unmodified	1058.5608	0.56078914	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		4.5213	4.5213	3	0.0084234	2142	160511_QHF_FH_JSI11i_3	58.37	30.942			0.24855	0.23508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24855	0.23508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	210680000	164030000	46652000	0	0	0	0	0	0	210680000	164030000	46652000	0	0	0	50608	2438	47638	306262	412035	412035			1	
TKEEVEAAK	2	Unmodified	1003.5186	0.51858998	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	6.1945	5.6103	3	0.0039039	3503	160511_QHF_FH_JSI12i_2	53.756	44.893			0.92819	1.0168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92819	1.0168	NaN	1	0	Median	3152900000	1366200000	1786800000	0	0	0	0	0	0	0	0	0	3152900000	1366200000	1786800000	50609	3848	47639	306263	412036	412036			1	
TKEEVNEWFTK	2	Unmodified	1409.6827	0.68269519	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	43.442	43.21	2	0.0015595	36880	160511_QHF_FH_JSI12i_3	79.82	71.6			0.75052	0.79821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75052	0.79821	NaN	1	0	Median	48344000	31772000	16572000	0	0	0	0	0	0	0	0	0	48344000	31772000	16572000	50610	5365	47640	306264	412037;412038	412038			2	
TKEGVMYVGAK	2	Acetyl (K)	1223.622	0.62200919	599	O76070	SNCG	Gamma-synuclein	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13.5	0.5						2	2				2	2		47.984	38.145	2	0.0026479	22231	160513_QHF_FH_JSI11Kac_4	74.944	52.796			0.77868	0.8229	63.29	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2291	1.4459	50.673	2	0	Median	0.58103	0.56418	24.34	2	0	Median	NaN	NaN	NaN	0	0	Median	13705000	7650100	6055000	0	0	0	5611900	2728900	2883000	8093200	4921300	3172000	0	0	0	50611	599	47641	306265;306266;306267;306268	412039;412040;412041;412042	412041	310		4	
TKEGVMYVGAK	2	Acetyl (K);Oxidation (M)	1239.6169	0.61692381	599	O76070	SNCG	Gamma-synuclein	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	36.956	28.416	2	0.031349	16229	160513_QHF_FH_JSI12Kac_3	39.848	25.73			0.89481	0.97625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89481	0.97625	NaN	1	0	Median	2743300	1216300	1526900	0	0	0	0	0	0	0	0	0	2743300	1216300	1526900	50612	599	47641	306269	412043	412043	310	226	1	
TKEPVKK	3	Unmodified	828.5069	0.50690308	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				1.2303	0.77859	3	0.011015	528	160511_QHF_FH_JSI9i_3	65.038	29.158			0.23338	0.19261	NaN	1	1	Median	0.23338	0.19261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	99107000	75898000	23208000	99107000	75898000	23208000	0	0	0	0	0	0	0	0	0	50613	2488	47642	306270	412044	412044			1	
TKFDLLK	2	Unmodified	863.51165	0.5116541	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	41.003	40.19	3	0.0039315	32867	160511_QHF_FH_JSI9i_3	65.252	15.894			0.8375	1.0096	12.095	4	3	Linear	1.2959	1.0748	NaN	1	1	Median	1.0627	1.2014	NaN	1	1	Median	0.98519	0.92496	NaN	1	1	Median	0.8968	0.94836	NaN	1	0	Median	157600000	82666000	74938000	22584000	11712000	10872000	28844000	14981000	13863000	35745000	15661000	20084000	70431000	40313000	30118000	50614	3238	47643	306271;306272;306273;306274;306275;306276	412045;412046;412047;412048;412049;412050;412051	412049			7	
TKFENLCK	2	Unmodified	1038.5168	0.51681584	880;2871	P07900;Q58FG0	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	18.857	18.228	2;3	0.0006254	14636	160511_QHF_FH_JSI12i_3	88.948	71.852			1.0979	1.0575	24.405	10	2	Median	1.2511	1.0648	12.728	3	1	Median	0.8664	1.0502	13.86	3	1	Median	0.6796	0.64229	2.3325	2	0	Median	1.1253	1.1469	1.7358	2	0	Median	8712900000	4162900000	4550000000	1006800000	432400000	574440000	1776400000	689230000	1087200000	2390300000	1336400000	1053900000	3539400000	1704900000	1834500000	50615	880;2871	47644	306277;306278;306279;306280;306281;306282;306283;306284;306285;306286	412052;412053;412054;412055;412056;412057;412058;412059	412058			8	
TKFETEQALR	1	Unmodified	1221.6354	0.63535107	65	Q04695;CON__Q04695;CON__Q9QWL7	KRT17	Keratin, type I cytoskeletal 17	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6								4	2	2	23.504	23.014	2;3	9.1108E-12	19334	160511_QHF_FH_JSI11i_3	152.07	124.06		+	0.99485	0.95641	16.559	7	1	Median	NaN	NaN	NaN	0	0	Median	0.79729	0.90479	11.639	3	1	Median	1.0277	0.97165	2.2354	2	0	Median	1.1791	1.1956	2.0769	2	0	Median	986630000	479640000	506980000	0	0	0	332840000	191950000	140900000	511580000	220620000	290970000	142200000	67080000	75119000	50616	65	47645	306287;306288;306289;306290;306291;306292;306293;306294	412060;412061;412062;412063;412064;412065;412066;412067;412068;412069	412062			10	
TKFPAEQYYR	1	Unmodified	1301.6404	0.64043645	2688	Q15631	TSN	Translin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			35.093	33.673	3	0.001522	28202	160511_QHF_FH_JSI10i_3	65.179	54.569			1.0511	1.1958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0511	1.1958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158640000	70582000	88060000	0	0	0	158640000	70582000	88060000	0	0	0	0	0	0	50617	2688	47646	306295	412070	412070			1	
TKFPAEQYYR	1	Acetyl (K)	1343.651	0.65100113	2688	Q15631	TSN	Translin	yes	yes	1	0	0	1		By matching	By MS/MS		14.5	0.5							1	1			1	1		59.448	48.669	2	0.044053	26613	160513_QHF_FH_JSI11Kac_5	44.309	27.284			0.47919	0.51943	74.051	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74797	0.87686	NaN	1	0	Median	0.307	0.30769	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10192000	7443800	2748600	0	0	0	1775000	853610	921360	8417500	6590200	1827300	0	0	0	50618	2688	47646	306296;306297	412071	412071			1	
TKFVDGVSTVAR	1	Acetyl (K)	1320.7038	0.70376498	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	59.798	49.122	2	0.0048442	27022	160513_QHF_FH_JSI10Kac_4	68.069	40.327			12.286	13.707	13.416	2	2	Median	NaN	NaN	NaN	0	0	Median	10.582	12.467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14.265	15.071	NaN	1	1	Median	5576300	326790	5249600	0	0	0	3271200	236390	3034800	0	0	0	2305200	90393	2214800	50619	679	47647	306298;306299	412072;412073	412072	342		2	
TKGDFILVGDLMR	1	Unmodified	1463.7806	0.7806351	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			79.7	78.341	3	0.0052923	64461	160511_QHF_FH_JSI9i_3	51.546	46.369			1.5361	1.4997	1.4893	2	2	Median	1.8064	1.5156	NaN	1	1	Median	1.3063	1.484	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58190000	23782000	34408000	19251000	5714300	13537000	38939000	18068000	20871000	0	0	0	0	0	0	50620	2734	47648	306300;306301	412074;412075	412075			2	
TKHDLMMK	2	Acetyl (K)	1044.5096	0.50962197	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.052	19.89	3	0.04541	11641	160513_QHF_FH_JSI11Kac_6	32.415	20.821			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50621	5214	47649	306302	412076	412076			1	
TKHEEILQNLQK	2	Unmodified	1479.8045	0.80454166	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	29.148	28.253	3	0.0054561	23791	160511_QHF_FH_JSI10i_3	50.354	38.208			0.56315	0.65902	51.085	3	2	Median	NaN	NaN	NaN	0	0	Median	0.80005	0.91233	45.997	2	2	Median	0.48975	0.46114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97639000	57878000	39761000	0	0	0	38148000	19052000	19096000	59491000	38826000	20664000	0	0	0	50622	1360	47650	306303;306304;306305;306306	412077;412078;412079;412080	412078			3	
TKLDELK	2	Acetyl (K)	887.4964	0.49639797	2195;2100	P80303;Q02818	NUCB2;NUCB1	Nucleobindin-2;Nesfatin-1;Nucleobindin-1	no	no	1	0	0	1			By MS/MS		14	0							1					1		43.626	33.409	2	0.0015793	20100	160513_QHF_FH_JSI11Kac_4	111.17	7.3342			0.31824	0.31497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31824	0.31497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17944000	13806000	4137600	0	0	0	0	0	0	17944000	13806000	4137600	0	0	0	50623	2100;2195	47652	306307	412081	412081	2209		1	
TKLPFIVVMNK	2	Unmodified	1288.7577	0.75771481	4861	Q9HCN4	GPN1	GPN-loop GTPase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	72.989	72.411	3	0.0020033	64299	160511_QHF_FH_JSI11i_3	62.408	54.863			0.72042	0.83089	22.732	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.72042	0.83089	NaN	1	1	Median	0.848	0.76388	NaN	1	1	Median	0.50356	0.54105	NaN	1	1	Median	86826000	45016000	41809000	0	0	0	33427000	17647000	15779000	33709000	15498000	18211000	19690000	11871000	7819500	50624	4861	47653	306308;306309;306310	412082;412083;412084	412082			3	
TKNSWASK	2	Unmodified	920.47158	0.4715802	2998	Q5VYM1	C9orf131	Uncharacterized protein C9orf131	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			21.674	20.47	3	0.048318	16726	160511_QHF_FH_JSI10i_3	23.429	7.2258			0.52895	0.59375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52895	0.59375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40325000	25133000	15191000	0	0	0	40325000	25133000	15191000	0	0	0	0	0	0	50625	2998	47654	306311	412085	412085			1	
TKPADMVIEAYGHGQR	1	Unmodified	1771.8676	0.86755262	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		45.091	44.036	3	9.0199E-06	36916	160511_QHF_FH_JSI10i_3	91.317	82.221			1.1487	0.95111	2.8098	3	0	Plateau	1.1487	0.95111	NaN	1	0	Median	0.80254	0.91325	NaN	1	0	Median	1.0362	0.96386	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	309140000	164060000	145090000	105550000	51174000	54381000	100260000	63488000	36776000	103320000	49393000	53931000	0	0	0	50626	621	47655	306312;306313;306314	412086;412087;412088;412089;412090	412088			5	
TKPFPWGDGNHTLFHNPHVNPLPTGYEDE	1	Acetyl (K)	3357.5479	0.54793963	1011	P12074	COX6A1	Cytochrome c oxidase subunit 6A1, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			81.608	76.015	3	3.0013E-28	41861	160513_QHF_FH_JSI10Kac_6	120.93	114.9			1.1572	1.3968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1572	1.3968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	283230000	129630000	153600000	0	0	0	283230000	129630000	153600000	0	0	0	0	0	0	50627	1011	47656	306315	412091	412091	813		1	
TKPIWTR	1	Unmodified	900.51814	0.51813647	898;880;2870;2871	P08238;P07900;Q14568;Q58FF8;Q58FG0	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P;HSP90AA5P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2;Putative heat shock protein HSP 90-alpha A5	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		7.33	6.13			4						2	2	3	1		23.892	20.521	3	0.0067869	16684	160511_QHF_FH_JSI10i_3	60.59	33.628			0.9024	0.8748	43.866	6	2	Median	0.96906	0.81293	28.926	2	1	Median	0.58884	0.68698	65.893	3	1	Plateau	0.80849	0.76724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1009600000	604910000	404710000	158250000	89369000	68882000	647290000	411990000	235300000	204080000	103550000	100520000	0	0	0	50628	898;880;2870;2871	47657	306316;306317;306318;306319;306320;306321	412092;412093;412094;412095;412096	412094			5	
TKPIWTR	1	Acetyl (K)	942.5287	0.52870115	898;880;2870;2871	P08238;P07900;Q14568;Q58FF8;Q58FG0	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P;HSP90AA5P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2;Putative heat shock protein HSP 90-alpha A5	no	no	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3	1	1	1	1	48.292	38.695	2	0.0061509	20110	160513_QHF_FH_JSI12Kac_6	98.458	29.282			0.55321	0.57863	51.481	4	0	Median	0.89676	0.72898	NaN	1	0	Median	0.71691	0.8597	NaN	1	0	Median	0.29089	0.27323	NaN	1	0	Median	0.42689	0.45929	NaN	1	0	Median	205170000	145170000	60001000	2361100	1317200	1044000	40427000	17755000	22672000	141210000	110060000	31149000	21178000	16041000	5136300	50629	898;880;2870;2871	47657	306322;306323;306324;306325	412097	412097	618;2705		1	
TKPLATTQPAK	2	Unmodified	1154.6659	0.66592292	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	1	2	2	11.011	10.758	2;3	3.9416E-05	7976	160511_QHF_FH_JSI12i_3	88.338	67.55			1.003	0.95591	9.9054	7	0	Median	1.1587	0.96909	1.9375	2	0	Median	0.65567	0.76889	NaN	1	0	Median	1.0609	0.99108	7.2411	2	0	Median	0.93475	0.94769	7.3029	2	0	Median	4254200000	2096700000	2157500000	360050000	140370000	219680000	215000000	124180000	90824000	1251700000	608960000	642720000	2427500000	1223200000	1204300000	50630	1298	47658	306326;306327;306328;306329;306330;306331;306332	412098;412099;412100;412101;412102;412103;412104;412105;412106	412106			9	
TKPLTPSIGAK	2	Unmodified	1111.6601	0.66010926	2484	Q14004	CDK13	Cyclin-dependent kinase 13	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			26.099	24.783	3	0.018166	20027	160511_QHF_FH_JSI9i_3	37.18	23.371			1.1627	1.1459	0.32637	2	0	Median	1.3916	1.1485	NaN	1	0	Median	0.97156	1.1432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59602000	33021000	26582000	32861000	19172000	13689000	26741000	13849000	12892000	0	0	0	0	0	0	50631	2484	47659	306333;306334	412107	412107			1	
TKPPLDHNASATDYK	2	Unmodified	1656.8107	0.81074925	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	19.493	19.506	3	0.0069315	15822	160511_QHF_FH_JSI12i_3	49.595	38.489			1.1938	1.2313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1938	1.2313	NaN	1	1	Median	25497000	9170000	16327000	0	0	0	0	0	0	0	0	0	25497000	9170000	16327000	50632	693	47660	306335;306336	412108;412109	412109			2	
TKPPQLLK	2	Unmodified	923.5804	0.58040237	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.886	25.532	3	0.025856	20711	160511_QHF_FH_JSI9i_3	30.167	26.559			0.5916	0.48636	NaN	1	0	Median	0.5916	0.48636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23050000	15524000	7525400	23050000	15524000	7525400	0	0	0	0	0	0	0	0	0	50633	4997	47661	306337	412110	412110			1	
TKPQDMISAGGESVAGITAISGK	2	Unmodified	2217.1311	0.13109711	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	73.928	73.638	3	2.1804E-19	63926	160511_QHF_FH_JSI12i_3	134.81	113.77			0.83182	0.83986	9.4003	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83182	0.83986	9.4003	2	2	Median	127210000	71097000	56111000	0	0	0	0	0	0	0	0	0	127210000	71097000	56111000	50634	1181	47662	306338;306339	412111;412112;412113	412113			3	
TKPQDMISAGGESVAGITAISGKPGDK	3	Oxidation (M)	2630.3221	0.32214536	1181	P20810	CAST	Calpastatin	yes	yes	0	0	1	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	3	1	54.759	53.95	3;4	1.812E-13	47820	160511_QHF_FH_JSI11i_3	98.491	88.233			0.84832	0.92073	18.487	8	2	Median	1.0324	0.82686	30.677	2	0	Median	0.80649	0.92073	0.33038	2	0	Median	1.071	0.96453	19.53	3	2	Median	0.75287	0.75878	NaN	1	0	Median	759690000	398450000	361250000	83346000	38033000	45312000	191750000	104020000	87729000	442680000	232700000	209970000	41921000	23687000	18234000	50635	1181	47663	306340;306341;306342;306343;306344;306345;306346;306347	412114;412115;412116;412117;412118;412119;412120;412121;412122;412123;412124;412125;412126;412127;412128;412129	412117		811	16	
TKPQDMISAGGESVAGITAISGKPGDK	3	Unmodified	2614.3272	0.32723074	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							2	2	3	2	69.28	68.623	3;4;5	1.7016E-48	59597	160511_QHF_FH_JSI12i_3	184.76	175.92			0.99018	0.93013	15.639	9	0	Median	1.2379	1.0153	11.818	2	0	Median	0.71767	0.8427	13.96	2	0	Median	1.0454	1.0114	6.0956	3	0	Plateau	0.71937	0.7278	11.726	2	0	Median	2621800000	1318500000	1303300000	386490000	154330000	232160000	265460000	168190000	97271000	1611700000	786340000	825340000	358150000	209610000	148530000	50636	1181	47663	306348;306349;306350;306351;306352;306353;306354;306355;306356	412130;412131;412132;412133;412134;412135;412136;412137;412138;412139;412140;412141;412142;412143;412144;412145	412145			15	
TKPQMQEER	1	Unmodified	1145.5499	0.54990688	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.5	0.5		3	3							1	2	2	1	8.2426	7.8428	2;3	0.00087504	5655	160511_QHF_FH_JSI9i_2	57.347	43.229			1.0702	1.0692	29.335	6	0	Median	1.1887	1.0116	NaN	1	0	Median	0.8398	0.96289	22.635	2	0	Median	1.0254	0.98586	46.169	2	0	Median	1.3299	1.5302	NaN	1	0	Median	411280000	217930000	193350000	81621000	40850000	40771000	160100000	101970000	58132000	115330000	50629000	64705000	54222000	24482000	29740000	50637	552	47664	306357;306358;306359;306360;306361;306362	412146;412147;412148;412149	412149			4	
TKPSDEEMLFIYGHYK	2	Oxidation (M)	1972.9241	0.92406445	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.55		1	7						7	2	4	6	3	57.834	53.109	3;4	3.8272E-05	28904	160513_QHF_FH_JSI11Kac_6	96.163	86.242			0.94398	0.98393	30.142	14	4	Median	0.9955	0.83909	18.071	2	0	Median	0.87373	1.0219	50.907	3	1	Median	0.91702	0.88471	28.116	6	3	Median	0.99492	0.99089	4.1836	3	0	Plateau	2487800000	1200900000	1286900000	233370000	104630000	128740000	212840000	116330000	96502000	795080000	397050000	398020000	1246500000	582910000	663610000	50638	863	47665	306363;306364;306365;306366;306367;306368;306369;306370;306371;306372;306373;306374;306375;306376;306377	412150;412151;412152;412153;412154;412155;412156;412157;412158;412159;412160;412161;412162;412163;412164;412165;412166;412167;412168;412169;412170;412171;412172;412173;412174;412175;412176	412156		399	27	
TKPSDEEMLFIYGHYK	2	Unmodified	1956.9291	0.92914983	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.81		14	14						9	5	10	9	13	66.211	63.503	2;3;4	4.1355E-39	54527	160511_QHF_FH_JSI12i_3	200.13	190.07			0.92562	0.96301	35.194	36	10	Median	1.0295	0.87042	12.687	5	0	Median	0.85795	0.99694	50.303	9	2	Median	0.96857	0.94547	17.939	9	3	Median	0.90117	0.98525	39.475	13	5	Median	30386000000	14949000000	15437000000	2132500000	1034100000	1098400000	5750900000	2905400000	2845500000	7949000000	3664600000	4284400000	14553000000	7345100000	7208400000	50639	863	47665	306378;306379;306380;306381;306382;306383;306384;306385;306386;306387;306388;306389;306390;306391;306392;306393;306394;306395;306396;306397;306398;306399;306400;306401;306402;306403;306404;306405;306406;306407;306408;306409;306410;306411;306412;306413;306414	412177;412178;412179;412180;412181;412182;412183;412184;412185;412186;412187;412188;412189;412190;412191;412192;412193;412194;412195;412196;412197;412198;412199;412200;412201;412202;412203;412204;412205;412206;412207;412208;412209;412210;412211;412212;412213;412214;412215;412216;412217;412218;412219;412220;412221;412222;412223;412224;412225;412226;412227;412228;412229;412230;412231;412232;412233;412234;412235;412236;412237;412238;412239;412240;412241;412242;412243;412244;412245;412246;412247;412248;412249;412250;412251;412252;412253;412254;412255;412256;412257;412258	412246			82	
TKPSDEEMLFIYGHYK	2	Acetyl (K)	1998.9397	0.93971451	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.984	70.701	3	1.895E-43	38377	160513_QHF_FH_JSI11Kac_6	178.03	168.28			0.97798	0.96917	8.1407	4	0	Median	1.1626	1.0104	NaN	1	0	Median	0.78727	0.92959	NaN	1	0	Median	0.94534	0.8938	NaN	1	0	Median	1.0117	1.0708	NaN	1	0	Median	1302700000	631210000	671520000	253430000	109750000	143670000	347910000	187770000	160140000	414240000	215090000	199150000	287150000	118600000	168550000	50640	863	47665	306415;306416;306417;306418	412259;412260;412261;412262;412263;412264;412265	412259	556		7	
TKPSEDSLSGQK	2	Unmodified	1275.6307	0.63065962	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	6.67	5.19			2				1					1	2	11.568	11.613	3	0.00011428	9083	160511_QHF_FH_JSI11i_3	76.073	62.043			1.0065	0.96673	12.736	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9522	0.88347	NaN	1	0	Median	1.0638	1.0578	NaN	1	0	Median	251700000	142760000	108950000	0	0	0	0	0	0	99861000	51669000	48192000	151840000	91091000	60753000	50641	1726	47666	306419;306420;306421	412266;412267;412268	412266			3	
TKPSPSQFMPLVVDYR	1	Unmodified	1863.9553	0.955305	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		77.313	76.374	3	0.0012564	67978	160511_QHF_FH_JSI11i_3	45.876	36.47			1.0804	1.0302	6.0722	3	1	Median	1.1447	0.92938	NaN	1	1	Median	0.89136	1.0346	NaN	1	0	Median	1.0804	1.0302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	417790000	219170000	198620000	111020000	55391000	55627000	118760000	71247000	47514000	188010000	92532000	95481000	0	0	0	50642	3709	47667	306422;306423;306424	412269;412270;412271;412272;412273	412269			5	
TKPSTVEVLESIDK	2	Unmodified	1544.8298	0.82975336	4587	Q9C0E8	LNP	Protein lunapark	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.67	0.471		1	2								2		1	57.051	56.797	3	2.156E-05	47593	160511_QHF_FH_JSI10i_3	74.789	40.404			0.34024	0.33422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34024	0.33422	NaN	1	1	Median	45574000	33680000	11894000	0	0	0	0	0	0	0	0	0	45574000	33680000	11894000	50643	4587	47668	306425;306426;306427	412274;412275;412276	412274			3	
TKPTHGIGK	2	Unmodified	937.53451	0.53451481	4086	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	5.4441	5.2132	2;3	0.000999	3100	160511_QHF_FH_JSI10i_3	89.698	66.627			0.96251	0.96082	12.807	8	0	Median	1.3028	1.043	2.6599	2	0	Median	0.77752	0.88716	2.3306	2	0	Median	1.158	1.1142	0.52159	2	0	Median	0.80303	0.82917	0.58779	2	0	Median	3328400000	1694800000	1633600000	1146500000	501770000	644720000	861640000	482760000	378880000	679100000	323120000	355980000	641180000	387130000	254050000	50644	4086	47669	306428;306429;306430;306431;306432;306433;306434;306435	412277;412278;412279;412280;412281;412282;412283;412284;412285;412286;412287;412288	412280			12	
TKPTQNSVR	1	Unmodified	1029.5567	0.55670682	1126;4951	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	no	no	0	0	0	1	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			5.7953	3.0987	2;3	0.0045829	3141	160511_QHF_FH_JSI9i_3	97.635	62.34			0.90912	0.95756	17.687	3	1	Median	1.096	0.89006	24.29	2	1	Median	0.82701	0.95756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	332500000	183780000	148730000	208050000	108800000	99246000	124460000	74979000	49480000	0	0	0	0	0	0	50645	1126;4951	47670	306436;306437;306438	412289;412290;412291	412290			3	
TKPVTGNLRPEEALQALTIYEGK	2	Unmodified	2527.3646	0.36460252	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			8							4	2	2		83.567	82.622	3;4	4.7068E-15	69279	160511_QHF_FH_JSI10i_3	124.08	120.8			0.95153	0.89785	22.413	8	1	Median	1.162	0.93979	33.159	4	1	Median	0.76455	0.89785	4.8962	2	0	Median	0.99721	0.92904	12.555	2	0	Median	NaN	NaN	NaN	0	0	Median	1145700000	581330000	564370000	423340000	198530000	224810000	322930000	190050000	132880000	399430000	192750000	206680000	0	0	0	50646	2517	47671	306439;306440;306441;306442;306443;306444;306445;306446	412292;412293;412294;412295;412296;412297;412298;412299;412300;412301;412302;412303;412304;412305;412306;412307	412299			16	
TKPYIQVDIGGGQTK	2	Unmodified	1603.857	0.85697116	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	5.99	1	6	8					2	4	6	7	5	3	48.545	45.534	2;3	2.1043E-21	38928	160511_QHF_FH_JSI12i_3	182.33	162.12			0.99754	0.91645	21.268	20	0	Median	1.0049	0.79095	8.5402	5	0	Median	0.7629	0.8997	26.375	7	0	Median	1.0255	1.0083	17.981	5	0	Median	0.99028	1.0089	5.0209	3	0	Median	12548000000	5838000000	6709800000	1863300000	865140000	998140000	2695500000	1287900000	1407600000	3639500000	1668500000	1971000000	4349500000	2016500000	2333000000	50647	982	47672	306447;306448;306449;306450;306451;306452;306453;306454;306455;306456;306457;306458;306459;306460;306461;306462;306463;306464;306465;306466;306467	412308;412309;412310;412311;412312;412313;412314;412315;412316;412317;412318;412319;412320;412321;412322;412323;412324;412325;412326;412327;412328;412329;412330;412331;412332;412333;412334;412335;412336;412337;412338;412339;412340;412341;412342;412343;412344;412345;412346;412347;412348;412349;412350	412343			43	
TKSLSFR	1	Acetyl (K)	879.48142	0.48141661	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		43.485	33.215	2	0.043008	18920	160513_QHF_FH_JSI11Kac_5	68.625	41.488			0.54127	0.53368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54127	0.53368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43846000	27208000	16638000	0	0	0	0	0	0	43846000	27208000	16638000	0	0	0	50648	1909	47673	306468	412351	412351			1	
TKSTGGAPTFNVTVTK	2	Unmodified	1607.8519	0.85188578	876	P07737	PFN1	Profilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.226	37.735	3	0.00016722	30789	160511_QHF_FH_JSI9i_3	69.331	63.551			0.83945	0.81077	50.031	2	0	Median	1.4269	1.1549	NaN	1	0	Median	0.49385	0.56919	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	82702000	43098000	39604000	36724000	14132000	22592000	45978000	28965000	17012000	0	0	0	0	0	0	50649	876	47674	306469;306470	412352;412353;412354;412355	412354			4	
TKTDELLALGR	1	Unmodified	1215.6823	0.68230126	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			45.597	44.633	3	0.020711	39378	160511_QHF_FH_JSI10i_2	29.807	20.375			0.97931	1.1948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97931	1.1948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14684000	7506400	7177600	0	0	0	14684000	7506400	7177600	0	0	0	0	0	0	50650	1016	47675	306471	412356;412357	412357			2	
TKTEISEMNR	1	Unmodified	1207.5867	0.58668632	51	CON__P05787;P05787;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	1	By MS/MS		By MS/MS		9	6			1					1		1		1		16.192	11.44	2;3	0.018423	10193	160511_QHF_FH_JSI11i_3	79.974	59.104		+	1.0827	0.94598	35.047	2	1	Median	0.90773	0.73834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2914	1.212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38333000	18889000	19445000	2598300	1286900	1311500	0	0	0	35735000	17602000	18133000	0	0	0	50651	51	47676	306472;306473	412358;412359;412360	412358			3	
TKTENPLILIDEVDK	2	Unmodified	1726.9353	0.93528106	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	78.432	78.304	3	0.00068595	67866	160511_QHF_FH_JSI12i_3	58.83	54.659			0.85599	0.83006	20.776	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76343	0.71665	NaN	1	0	Median	0.95977	0.96142	NaN	1	0	Median	84184000	48822000	35362000	0	0	0	0	0	0	31205000	21073000	10132000	52979000	27749000	25230000	50652	1459	47677	306474;306475	412361;412362	412361			2	
TKVEAFQTTISK	2	Unmodified	1351.7347	0.73473076	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.06		1	7					1	1	4	2	2	2	37.711	35.204	2;3	7.0457E-22	29780	160511_QHF_FH_JSI12i_3	174.05	144.31			1.163	1.282	24.256	10	1	Median	1.1027	0.95861	28.019	4	1	Median	1.1576	1.3776	0.99775	2	0	Median	1.2087	1.1349	8.0546	2	0	Median	1.4706	1.4972	8.9101	2	0	Median	1844200000	957740000	886450000	119590000	50873000	68717000	317270000	153020000	164250000	556520000	321790000	234730000	850810000	432060000	418750000	50653	5391	47678	306476;306477;306478;306479;306480;306481;306482;306483;306484;306485	412363;412364;412365;412366;412367;412368;412369;412370;412371;412372;412373;412374;412375;412376;412377	412374			15	
TKWENNNK	2	Acetyl (K)	1074.5094	0.50942227	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		18.872	11.246	2	0.035485	8204	160513_QHF_FH_JSI11Kac_4	54.157	41.63			0.52743	0.50928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52743	0.50928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2787200	1282800	1504400	0	0	0	0	0	0	2787200	1282800	1504400	0	0	0	50654	5011	47679	306486	412378	412378			1	
TKYDANQQAR	1	Acetyl (K)	1235.5895	0.58946351	4149	Q96K37	SLC35E1	Solute carrier family 35 member E1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	15.772	8.5009	2	0.00641	6505	160513_QHF_FH_JSI12Kac_3	64.297	51.244			0.9292	1.033	10.037	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88312	1.033	NaN	1	0	Median	0.88598	0.87481	NaN	1	0	Median	0.97454	1.048	NaN	1	0	Median	22720000	12255000	10465000	0	0	0	5706100	3018200	2688000	8497500	4953700	3543700	8516300	4283300	4232900	50655	4149	47680	306487;306488;306489	412379;412380;412381;412382;412383;412384	412382	3053		6	
TKYFFFDDGNGLK	2	Acetyl (K)	1592.7511	0.75110911	1928	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.985	74.468	2	0.022244	39255	160513_QHF_FH_JSI11Kac_5	57.836	43.678			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1068200	1068200	0	0	0	0	0	0	0	1068200	1068200	0	0	0	0	50656	1928	47681	306490	412385	412385	1937		1	
TKYPTQSGKPPLLVSAPSK	3	Unmodified	1998.115	0.11497676	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			3							1	2			43.545	41.995	4	0.0048833	34921	160511_QHF_FH_JSI10i_3	46.159	36.875			0.4718	0.79235	30.731	3	3	Plateau	0.96386	0.79235	NaN	1	1	Median	0.59668	0.68369	41.759	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91944000	52373000	39571000	27628000	15305000	12323000	64316000	37068000	27247000	0	0	0	0	0	0	50657	4603	47682	306491;306492;306493	412386;412387;412388	412386			3	
TLAAEMQELR	0	Unmodified	1160.586	0.58595803	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	46.731	45.736	2	8.0141E-05	39300	160511_QHF_FH_JSI11i_2	87.298	68.858			0.93337	0.85097	75.049	5	2	Median	1.1018	0.93394	24.039	2	1	Median	0.70129	0.85097	NaN	1	0	Median	0.80194	0.80772	NaN	1	0	Median	3.9981	4.5846	NaN	1	1	Median	715030000	268560000	446470000	145520000	76572000	68948000	115870000	55396000	60473000	142680000	62340000	80338000	310970000	74253000	236710000	50658	3499	47683	306494;306495;306496;306497;306498	412389;412390;412391;412392;412393;412394;412395	412392			7	
TLAAEMQELRVR	0	Oxidation (M)	1431.7504	0.7503976	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				102.06	101.88	2	0.017111	82773	160511_QHF_FH_JSI9i_3	65.347	36.62			1.0159	0.8127	NaN	1	0	Median	1.0159	0.8127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48385000	27007000	21379000	48385000	27007000	21379000	0	0	0	0	0	0	0	0	0	50659	3499	47684	306499	412396	412396		2262	1	
TLAAFGK	1	Unmodified	706.40138	0.40137537	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		30.468	29.532	2	0.031522	24947	160511_QHF_FH_JSI11i_2	51.572	31.69			0.68374	0.64325	64.942	4	3	Median	1.3008	1.0897	88.02	2	2	Median	0.38046	0.46916	NaN	1	1	Median	0.68141	0.70756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	241130000	132680000	108450000	83057000	44618000	38439000	66555000	40526000	26029000	91519000	47538000	43981000	0	0	0	50660	3862	47685	306500;306501;306502;306503	412397;412398;412399;412400	412399			4	
TLADAEDK	1	Unmodified	861.40798	0.40797689	5053	Q9NVV4	MTPAP	Poly(A) RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	10.016	9.7397	2	0.023161	7466	160511_QHF_FH_JSI10i_1	54.436	23.133			1.3641	0.59708	65.246	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.5836	0.70429	NaN	1	1	Median	0.50949	0.47742	NaN	1	1	Median	0.9625	0.99408	95.445	2	2	Median	312830000	164910000	147920000	0	0	0	81430000	49805000	31625000	70982000	43209000	27773000	160420000	71900000	88519000	50661	5053	47686	306504;306505;306506;306507	412401;412402;412403;412404	412404			4	
TLADAEGDVFR	0	Unmodified	1192.5724	0.57241646	2187	Q02252	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		47.819	47.132	2	0.040342	41909	160511_QHF_FH_JSI9i_1	37.717	14.977			1.1531	1.0787	14.697	3	0	Plateau	1.0296	0.8383	NaN	1	0	Median	0.70845	0.8373	NaN	1	0	Median	1.1531	1.0807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	165210000	73988000	91219000	48261000	23624000	24637000	45914000	22002000	23912000	71031000	28362000	42670000	0	0	0	50662	2187	47687	306508;306509;306510	412405	412405			1	
TLADIIMEK	1	Unmodified	1032.5525	0.55253264	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	61.447	60.519	2	0.0038717	51945	160511_QHF_FH_JSI12i_2	58.433	48.963			0.37865	0.38998	20.002	3	1	Plateau	0.64626	0.5623	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37865	0.38998	NaN	1	0	Median	0.37338	0.40712	NaN	1	0	Median	138850000	94259000	44596000	42369000	24549000	17820000	0	0	0	58160000	42061000	16099000	38326000	27649000	10677000	50663	2479	47688	306511;306512;306513	412406;412407;412408;412409;412410	412406			5	
TLADLIR	0	Unmodified	800.4756	0.47560295	2776	Q16878	CDO1	Cysteine dioxygenase type 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	5.1	3	4	2					2		1	2	4	4	45.096	42.658	2	0.00022983	23625	160513_QHF_FH_JSI11Kac_5	134.66	0			0.97398	0.98749	13.387	11	2	Median	1.0712	0.92107	NaN	1	0	Median	0.77587	0.9313	8.2846	2	0	Median	1.0701	1.0144	16.863	4	1	Median	0.89435	0.98373	11.368	4	1	Median	6555800000	3126300000	3429400000	807540000	393700000	413840000	1540000000	783680000	756290000	2531500000	1178600000	1352900000	1676700000	770340000	906390000	50664	2776	47689	306514;306515;306516;306517;306518;306519;306520;306521;306522;306523;306524	412411;412412;412413;412414;412415;412416;412417;412418;412419;412420;412421;412422;412423;412424;412425	412421			15	
TLADLQLEYLDLYLMHWPYAFER	0	Oxidation (M)	2915.4204	0.42040284	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	1	0	By MS/MS			By matching	16	0									2	1			1	97.96	88.686	3	3.5016E-17	50909	160513_QHF_FH_JSI9Kac_6	121.35	107.89			1.495	1.4319	47.384	2	0	Median	2.3447	2.0018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95322	1.0242	NaN	1	0	Median	300250000	141870000	158380000	148120000	57589000	90531000	0	0	0	0	0	0	152130000	84280000	67849000	50665	1054	47690	306525;306526	412426	412426		675	1	
TLADLQLEYLDLYLMHWPYAFER	0	Unmodified	2899.4255	0.42548822	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.415	92.695	3	1.2635E-89	54219	160513_QHF_FH_JSI10Kac_6	217.94	203.14			1.1844	1.3899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1844	1.3899	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	981590000	439780000	541810000	0	0	0	981590000	439780000	541810000	0	0	0	0	0	0	50666	1054	47690	306527	412427	412427			1	
TLAEEQHK	1	Unmodified	954.47706	0.47705951	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	5.7699	5.1858	2	0.0056305	3175	160511_QHF_FH_JSI12i_2	73.26	45.086			0.48294	0.52873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48294	0.52873	NaN	1	1	Median	19344000	12977000	6366700	0	0	0	0	0	0	0	0	0	19344000	12977000	6366700	50667	416	47691	306528	412428	412428			1	
TLAEHQQLIPLVEK	1	Unmodified	1617.909	0.90900673	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	1	4	4	59.78	59.144	2;3	3.5928E-06	50746	160511_QHF_FH_JSI12i_3	125.28	112.4			1.0466	1.0303	13.598	11	0	Median	1.1882	1.0315	20.602	2	0	Median	0.72755	0.90524	NaN	1	0	Median	0.9844	0.95532	10.897	4	0	Median	1.0029	1.0701	12.372	4	0	Median	2047300000	1028400000	1018900000	283500000	131960000	151530000	323090000	170840000	152250000	706920000	360110000	346810000	733770000	365460000	368310000	50668	5663	47692	306529;306530;306531;306532;306533;306534;306535;306536;306537;306538;306539	412429;412430;412431;412432;412433;412434;412435;412436;412437;412438;412439;412440;412441;412442;412443;412444	412443			16	
TLAEIAK	1	Unmodified	744.43815	0.43815481	2644;3809	Q15233;Q8WXF1	NONO;PSPC1	Non-POU domain-containing octamer-binding protein;Paraspeckle component 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.5	4	2					2			2	1	2	3	26.311	23.499	2	0.005441	14345	160513_QHF_FH_JSI12Kac_4	94.662	13.366			0.91643	0.93103	41.515	8	1	Median	1.0301	0.84592	21.414	2	0	Median	0.73044	0.88072	NaN	1	0	Median	1.221	1.1924	8.1769	2	0	Median	0.79385	0.87957	62.617	3	1	Median	3002800000	1438500000	1564300000	822750000	348310000	474440000	610930000	341210000	269730000	439360000	176090000	263270000	1129700000	572860000	556880000	50669	2644;3809	47693	306540;306541;306542;306543;306544;306545;306546;306547	412445;412446;412447;412448;412449;412450;412451;412452;412453;412454;412455;412456;412457	412457			13	
TLAEINANR	0	Unmodified	1000.5302	0.53015772	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.68	23.874	2	4.4315E-05	19886	160511_QHF_FH_JSI11i_2	98.629	55.563			0.60424	0.64562	38.931	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84181	0.85022	NaN	1	0	Median	0.43372	0.49026	NaN	1	0	Median	123720000	59826000	63895000	0	0	0	0	0	0	89080000	41451000	47629000	34641000	18375000	16266000	50670	2400	47694	306548;306549	412458;412459;412460	412459			3	
TLAEINANRADAEEEAATRIPA	0	Unmodified	2325.1561	0.15606631	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	2	By MS/MS				2	0		1								1				58.885	57.9	3	1.6478E-06	50801	160511_QHF_FH_JSI9i_2	81.016	64.893			1.726	1.4716	NaN	1	0	Median	1.726	1.4716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148540000	51798000	96742000	148540000	51798000	96742000	0	0	0	0	0	0	0	0	0	50671	2400	47695	306550	412461	412461			1	
TLAEQNTK	1	Unmodified	903.46616	0.46616048	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.2313	6.8955	2	0.0090104	4455	160511_QHF_FH_JSI9i_1	56.434	21.61			1.0699	1.0068	14.244	4	0	Median	1.2268	1.0157	NaN	1	0	Median	1.1159	1.3094	NaN	1	0	Median	1.0258	0.99799	NaN	1	0	Median	0.89413	0.9556	NaN	1	0	Median	396000000	196820000	199180000	113970000	39094000	74873000	93087000	54280000	38808000	96355000	54352000	42003000	92591000	49097000	43493000	50672	2584	47696	306551;306552;306553;306554	412462;412463;412464;412465;412466	412465			5	
TLAESALQLLYTAK	1	Unmodified	1520.845	0.84500949	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.2	2	9	4						3	4	5	5	4	91.922	89.944	2;3	8.8185E-52	81351	160511_QHF_FH_JSI11i_2	213.84	192.85			1.0913	1.0694	25.457	17	4	Median	1.1652	1.0046	7.9998	3	0	Plateau	0.88275	1.0031	46.038	5	1	Median	1.2007	1.1402	6.7144	5	1	Median	0.98127	1.0315	20.324	4	2	Median	1196600000	568200000	628360000	239390000	105580000	133810000	221480000	118300000	103170000	418800000	193740000	225070000	316880000	150580000	166300000	50673	5616	47697	306555;306556;306557;306558;306559;306560;306561;306562;306563;306564;306565;306566;306567;306568;306569;306570;306571;306572	412467;412468;412469;412470;412471;412472;412473;412474;412475;412476;412477;412478;412479;412480;412481;412482;412483;412484;412485;412486;412487;412488;412489	412480			23	
TLAESDEGK	1	Unmodified	948.44001	0.4400053	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	1	3	1	9.2122	7.7292	2	5.2576E-06	6338	160511_QHF_FH_JSI10i_1	116.37	96.668			1.0121	0.9355	123.96	6	4	Median	0.84779	0.6767	NaN	1	0	Median	0.55852	0.6462	NaN	1	0	Median	0.92541	0.91051	170.81	3	3	Plateau	1.2081	1.2933	NaN	1	1	Median	1370200000	649830000	720400000	248360000	121120000	127250000	311910000	152330000	159570000	539930000	248720000	291200000	270040000	127660000	142380000	50674	2284	47698	306573;306574;306575;306576;306577;306578	412490;412491;412492;412493;412494;412495;412496;412497	412494			8	
TLAESDEGKLHVLR	1	Acetyl (K)	1608.8471	0.84713476	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		61.275	50.368	3	0.035019	27472	160513_QHF_FH_JSI11Kac_5	38.3	26.032			0.061599	0.060496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.061599	0.060496	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5236100	5092900	143150	0	0	0	0	0	0	5236100	5092900	143150	0	0	0	50675	2284	47699	306579	412498	412498			1	
TLAFAIPMIHAVLQWQK	1	Unmodified	1966.0863	0.086259592	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	96.478	88.069	2;3	1.006E-83	49599	160513_QHF_FH_JSI11Kac_6	185.67	169.17			0.9578	0.95085	34.825	8	0	Median	0.99462	0.85893	13.344	2	0	Median	0.79513	0.9427	2.2495	2	0	Median	1.0524	1.0155	1.1521	2	0	Median	0.59557	0.62828	75.026	2	0	Median	2473900000	1285700000	1188300000	630790000	317290000	313500000	865480000	477540000	387940000	740290000	346990000	393300000	237350000	143840000	93513000	50676	4603	47700	306580;306581;306582;306583;306584;306585;306586;306587	412499;412500;412501;412502;412503;412504;412505;412506;412507;412508;412509;412510;412511;412512	412499			14	
TLAFLIPAVELIVK	1	Unmodified	1525.9484	0.94835235	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	3.85		3	7						1	2	3	2	4	102.38	99.984	2;3	8.1042E-10	85721	160511_QHF_FH_JSI10i_3	106.35	99.815			0.86149	0.86107	26.324	4	4	Median	0.71935	0.61747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0317	1.0016	NaN	1	1	Median	0.86923	0.89681	27.135	2	2	Median	298880000	168500000	130380000	6920900	4259100	2661800	0	0	0	63535000	37773000	25762000	228420000	126470000	101960000	50677	5042	47701	306588;306589;306590;306591;306592;306593;306594;306595;306596;306597;306598	412513;412514;412515;412516;412517;412518;412519;412520;412521;412522;412523	412515			11	
TLAFLVPVLEALYR	0	Unmodified	1603.9338	0.93376492	2371	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.32	90.902	3	0.0035193	52195	160513_QHF_FH_JSI11Kac_6	41.967	29.584			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50678	2371	47702	306599	412524	412524			1	
TLAFPLTIR	0	Unmodified	1030.6175	0.61751616	5443	Q9UNN8	PROCR	Endothelial protein C receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	81.656	80.967	2	0.00039322	70329	160511_QHF_FH_JSI12i_3	81.548	46.74			1.0182	0.99987	12.996	6	0	Median	1.4642	1.1778	NaN	1	0	Median	0.75403	0.89831	17.166	2	0	Median	1.0241	0.9663	2.8095	2	0	Median	1.0464	1.0543	NaN	1	0	Median	239810000	114140000	125670000	24867000	9912100	14955000	58461000	33602000	24859000	74509000	31345000	43164000	81971000	39280000	42691000	50679	5443	47703	306600;306601;306602;306603;306604;306605	412525;412526;412527;412528;412529;412530	412530			6	
TLAFSIPILMQLK	1	Unmodified	1473.8629	0.86290816	5530	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	102.35	102.24	2;3	3.6185E-15	83062	160511_QHF_FH_JSI9i_3	185.14	163.67			1.1316	0.94722	16.594	5	1	Median	1.1444	0.93616	1.6604	2	1	Median	1.1579	1.3168	NaN	1	0	Median	1.089	1.0193	NaN	1	0	Median	0.85761	0.8536	NaN	1	0	Median	290650000	145660000	144990000	109320000	51716000	57605000	34225000	15565000	18660000	21852000	9751200	12101000	125250000	68624000	56627000	50680	5530	47704	306606;306607;306608;306609;306610	412531;412532;412533;412534;412535;412536;412537	412534			7	
TLAFTSVDLTNK	1	Unmodified	1308.6925	0.6925316	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.11	4	7	1				2	4		5	4	5	4	70.582	66.488	2	1.7055E-39	34801	160513_QHF_FH_JSI11Kac_5	195.27	116.93			1.069	1.0587	14.48	18	7	Median	1.2274	1.0009	14.077	5	2	Median	0.84623	0.99839	9.9542	4	1	Median	1.1388	1.132	17.081	5	2	Median	1.0478	1.1145	15.71	4	2	Median	3945700000	1843300000	2102400000	816580000	331420000	485160000	678980000	340940000	338040000	1432700000	633650000	799050000	1017400000	537280000	480120000	50681	4905	47705	306611;306612;306613;306614;306615;306616;306617;306618;306619;306620;306621;306622;306623;306624;306625;306626;306627;306628	412538;412539;412540;412541;412542;412543;412544;412545;412546;412547;412548;412549;412550;412551;412552;412553;412554;412555;412556;412557;412558;412559;412560;412561;412562;412563;412564;412565	412562			28	
TLAFVIPILEILLR	0	Unmodified	1610.0171	0.01710062	3670	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	1	3			104.48	97.888	2;3	1.6112E-22	58448	160513_QHF_FH_JSI10Kac_6	153.95	118.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50682	3670	47706	306629;306630;306631;306632	412566;412567;412568;412569	412568			4	
TLAFVIPVVQALLSR	0	Unmodified	1625.9869	0.98686312	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			100.33	94.605	2;3	4.884E-24	55716	160513_QHF_FH_JSI10Kac_6	147.39	121.74			0.83513	0.99357	6.9346	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83513	0.99357	6.9346	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202150000	108500000	93648000	0	0	0	202150000	108500000	93648000	0	0	0	0	0	0	50683	3566	47707	306633;306634	412570;412571;412572	412572			3	
TLAGDVHIVR	0	Unmodified	1079.6087	0.60874239	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		8	7							2	4	5	4	33.854	33.105	2;3	1.4324E-09	27923	160511_QHF_FH_JSI12i_3	134.26	108.37			0.99163	0.97857	39.627	14	2	Median	1.1497	0.97857	6.5645	2	0	Median	0.83853	0.99803	16.757	4	1	Median	1.5061	1.4224	37.403	4	1	Linear	1.9484	1.9415	68.909	4	0	Linear	4604500000	2162200000	2442300000	491520000	211940000	279570000	766120000	405040000	361080000	1676100000	772540000	903530000	1670800000	772650000	898130000	50684	5246	47708	306635;306636;306637;306638;306639;306640;306641;306642;306643;306644;306645;306646;306647;306648;306649	412573;412574;412575;412576;412577;412578;412579;412580;412581;412582;412583;412584;412585;412586;412587;412588;412589;412590;412591;412592;412593;412594;412595;412596	412596			24	
TLAGLPLLVAYK	1	Unmodified	1257.7697	0.76965971	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	96.18	95.889	2	3.8118E-05	85210	160511_QHF_FH_JSI11i_3	103.7	74.613			1.085	1.0728	11.714	8	0	Median	1.1771	0.98233	4.3228	2	0	Median	0.93581	1.0927	1.7882	2	0	Median	1.1418	1.1072	5.2882	2	0	Median	1.0626	1.1177	26.365	2	0	Median	407840000	190950000	216880000	62458000	26493000	35965000	82927000	40386000	42541000	151770000	73182000	78586000	110680000	50892000	59792000	50685	454	47709	306650;306651;306652;306653;306654;306655;306656;306657	412597;412598;412599;412600;412601;412602;412603;412604;412605;412606;412607;412608;412609;412610;412611;412612;412613	412597			17	
TLAGLPLLVAYKEDEIPVLK	2	Unmodified	2181.2661	0.26605768	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	101.48	101.4	3	3.032E-25	90509	160511_QHF_FH_JSI11i_3	176.73	171.86			1.0181	1.087	33.198	7	1	Median	2.0067	1.677	54.045	2	1	Median	0.89932	1.0505	13.128	2	0	Median	1.0609	1.036	6.7948	2	0	Median	0.97048	0.96767	NaN	1	0	Median	3044800000	1503600000	1541200000	305240000	120400000	184840000	629410000	319980000	309430000	1183000000	554970000	628040000	927140000	508250000	418890000	50686	454	47710	306658;306659;306660;306661;306662;306663;306664	412614;412615;412616;412617;412618;412619;412620;412621;412622;412623	412615			10	
TLAGLVVQLLQFQEDAFGK	1	Unmodified	2076.1255	0.12554145	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									4		2	2		99.698	92.745	2;3	1.6878E-275	55110	160513_QHF_FH_JSI10Kac_6	352.15	316.41			0.75591	0.88607	4.5909	3	1	Median	NaN	NaN	NaN	0	0	Median	0.735	0.86126	6.0645	2	0	Median	0.94317	0.88607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	535490000	295050000	240440000	0	0	0	363770000	212340000	151430000	171720000	82708000	89016000	0	0	0	50687	3907	47711	306665;306666;306667;306668	412624;412625;412626;412627	412626			4	
TLAIELAPR	0	Unmodified	982.58113	0.58113065	4429	Q9BTZ2;P0CG22	DHRS4;DHRS4L1	Dehydrogenase/reductase SDR family member 4;Putative dehydrogenase/reductase SDR family member 4-like 1	yes	no	0	0	0	0	By matching		By MS/MS	By matching	2	0		3								1		1	1	58.389	57.445	2	0.002244	49764	160511_QHF_FH_JSI11i_2	78.192	59.461			1.0784	1.182	14.581	3	0	Plateau	1.3685	1.182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0657	1.0706	NaN	1	0	Median	1.2474	1.4266	NaN	1	0	Median	166390000	79077000	87309000	43079000	19693000	23386000	0	0	0	68675000	33799000	34875000	54632000	25584000	29048000	50688	4429	47712	306669;306670;306671	412628	412628			1	
TLALIKPDAISK	2	Unmodified	1268.7704	0.77038799	5657	Q9Y5B8	NME7	Nucleoside diphosphate kinase 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		56.782	55.235	3	0.0028754	48536	160511_QHF_FH_JSI11i_3	50.563	30.904			0.57838	0.66498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57838	0.66498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46213000	25308000	20905000	0	0	0	46213000	25308000	20905000	0	0	0	0	0	0	50689	5657	47713	306672;306673;306674	412629;412630;412631	412629			3	
TLALQQQLQAVR	0	Unmodified	1367.7885	0.78849767	5193	Q9P0W2	HMG20B	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.069	59.069	2	0.03454	52398	160511_QHF_FH_JSI11i_3	72.243	50.78			0.90477	0.8185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90477	0.8185	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33406000	19299000	14106000	0	0	0	0	0	0	33406000	19299000	14106000	0	0	0	50690	5193	47714	306675	412632	412632			0	
TLAMDTILANAR	0	Unmodified	1288.6809	0.68092105	1596	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	71.741	70.973	2	3.7559E-65	62221	160511_QHF_FH_JSI11i_2	235.66	223.42			1.0009	1.0252	8.5313	5	1	Median	1.1059	0.94	NaN	1	0	Median	0.84841	1.0252	NaN	1	0	Median	1.0227	1.0328	NaN	1	0	Median	0.94762	1.0117	15.304	2	1	Median	1013800000	524220000	489540000	198550000	110270000	88285000	229550000	120360000	109190000	333810000	174040000	159760000	251840000	119540000	132300000	50691	1596	47715	306676;306677;306678;306679;306680	412633;412634;412635;412636;412637;412638;412639;412640;412641	412638			9	
TLAMLDEEPK	1	Unmodified	1145.5638	0.56382561	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.01	49.054	2	0.044573	43298	160511_QHF_FH_JSI10i_2	44.318	32.47			1.4641	1.7336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4641	1.7336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15715000	6232700	9482200	0	0	0	15715000	6232700	9482200	0	0	0	0	0	0	50692	1430	47716	306681	412642	412642			1	
TLAPGLFFSLMASR	0	Unmodified	1509.8014	0.80137054	3052	Q6IAN0	DHRS7B	Dehydrogenase/reductase SDR family member 7B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.658	89.937	2	0.00019337	51885	160513_QHF_FH_JSI10Kac_6	90.614	64.099			1.3432	1.601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3432	1.601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126160000	54020000	72142000	0	0	0	126160000	54020000	72142000	0	0	0	0	0	0	50693	3052	47717	306682	412643;412644	412643			2	
TLAPLLASLLSPGSVLVLSAR	0	Unmodified	2077.2511	0.25107631	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	100.61	92.462	2;3	8.4214E-210	52471	160513_QHF_FH_JSI11Kac_6	305.05	259.77			0.9748	0.97758	7.9722	6	0	Median	1.0664	0.91715	NaN	1	0	Median	0.90588	1.0754	2.1189	2	0	Median	0.98562	0.92121	1.8373	2	0	Median	0.97563	1.024	NaN	1	0	Median	5497400000	2815400000	2682000000	560630000	279110000	281530000	1826500000	973350000	853200000	2888500000	1448100000	1440500000	221660000	114890000	106770000	50694	1433	47718	306683;306684;306685;306686;306687;306688	412645;412646;412647;412648;412649;412650;412651;412652;412653	412646			9	
TLAPTWEELSK	1	Unmodified	1273.6554	0.65541781	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	1	3		3							2	2	2		63.562	62.675	2	9.9467E-05	51382	160511_QHF_FH_JSI9i_3	87.298	60.784			0.6582	0.59393	12.083	5	3	Median	0.69401	0.57024	2.164	2	1	Median	0.57481	0.67225	17.517	2	2	Median	0.6582	0.61036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	405750000	246700000	159060000	113390000	66086000	47302000	247750000	150390000	97366000	44614000	30224000	14390000	0	0	0	50695	3603	47719	306689;306690;306691;306692;306693;306694	412654;412655;412656;412657;412658;412659	412658			6	
TLAPTWEELSKK	2	Unmodified	1401.7504	0.75038083	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.928	53.69	3	0.0070448	46050	160511_QHF_FH_JSI12i_3	58.752	44.191			3.0641	3.1628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0641	3.1628	NaN	1	0	Median	70056000	15475000	54582000	0	0	0	0	0	0	0	0	0	70056000	15475000	54582000	50696	3603	47720	306695	412660	412660			0	
TLAQAMLNNAQPDQYEAPDK	1	Unmodified	2217.0372	0.037196727	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	59.072	58.423	2;3	1.164E-68	52922	160511_QHF_FH_JSI11i_1	295.09	280.3			1.0712	1.0554	7.8721	8	0	Median	1.3536	1.1216	7.312	2	0	Median	0.8323	0.97937	5.6289	2	0	Median	1.0236	1.0046	5.6886	2	0	Median	1.0875	1.1245	1.1235	2	0	Median	2419900000	1188100000	1231800000	637170000	303710000	333460000	558550000	239330000	319220000	582740000	320180000	262550000	641480000	324920000	316560000	50697	3914	47721	306696;306697;306698;306699;306700;306701;306702;306703	412661;412662;412663;412664;412665;412666;412667;412668;412669;412670;412671;412672;412673;412674;412675;412676;412677	412664			17	
TLAQAMMYTQHPEQYEAPDK	1	Unmodified	2351.0562	0.05621761	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	54.081	53.634	3	3.0724E-14	45976	160511_QHF_FH_JSI12i_3	142.31	130.86			1.0132	1.1193	14.365	4	1	Linear	1.6573	1.4003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.0931	10.804	2	0	Median	1.0228	1.0619	NaN	1	0	Median	349810000	164670000	185140000	52830000	18747000	34083000	0	0	0	180040000	76632000	103410000	116950000	69295000	47650000	50698	205	47722	306704;306705;306706;306707	412678;412679;412680;412681;412682;412683;412684	412683			7	
TLAQLNPESSLFIIASK	1	Unmodified	1831.0091	0.0091147084	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.33	8	8	8					2	8	8	8	10	8	97.678	95.034	2;3	4.8737E-147	45399	160513_QHF_FH_JSI11Kac_6	279.24	244.86			0.931	0.94311	14.412	34	0	Median	1.1292	0.94626	10.107	8	0	Median	0.86611	1.0176	6.4683	8	0	Median	0.931	0.91737	14.699	10	0	Median	0.90023	0.97024	21.843	8	0	Median	25543000000	12415000000	13128000000	4958900000	1979500000	2979400000	4959700000	2445600000	2514200000	9070000000	4721900000	4348100000	6554600000	3267800000	3286800000	50699	856	47723	306708;306709;306710;306711;306712;306713;306714;306715;306716;306717;306718;306719;306720;306721;306722;306723;306724;306725;306726;306727;306728;306729;306730;306731;306732;306733;306734;306735;306736;306737;306738;306739;306740;306741	412685;412686;412687;412688;412689;412690;412691;412692;412693;412694;412695;412696;412697;412698;412699;412700;412701;412702;412703;412704;412705;412706;412707;412708;412709;412710;412711;412712;412713;412714;412715;412716;412717;412718;412719;412720;412721;412722;412723;412724;412725;412726;412727;412728;412729;412730;412731;412732;412733;412734;412735;412736;412737;412738;412739;412740;412741;412742;412743;412744;412745;412746;412747;412748	412705			63	
TLASAGGPDNLVLLNPEK	1	Unmodified	1807.968	0.96797818	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.202	74.711	2	1.131E-08	66407	160511_QHF_FH_JSI9i_1	166.09	144.46			0.89021	0.88322	8.5398	4	0	Median	1.0235	0.8825	NaN	1	0	Median	0.65966	0.76771	NaN	1	0	Median	0.90807	0.88394	NaN	1	0	Median	0.87269	0.93922	NaN	1	0	Median	166470000	89206000	77260000	37100000	17486000	19615000	39853000	23953000	15899000	52475000	29051000	23425000	37037000	18716000	18321000	50700	1440	47724	306742;306743;306744;306745	412749;412750;412751;412752;412753;412754;412755	412755			7	
TLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA	0	Unmodified	4471.1892	0.18916394	2699	Q15714	TSC22D1	TSC22 domain family protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			93.711	93.701	4	0.0015036	85023	160511_QHF_FH_JSI10i_1	28.437	24.966			1.0636	1.198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0636	1.198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30179000	14848000	15331000	0	0	0	30179000	14848000	15331000	0	0	0	0	0	0	50701	2699	47725	306746	412756;412757	412757			2	
TLATDILMGVLK	1	Unmodified	1273.7316	0.73155964	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.78		5	1						4	3	3	2	2	98.091	94.301	2	9.3668E-108	90102	160511_QHF_FH_JSI10i_2	242.83	202.83			1.0005	0.99368	16.34	9	0	Median	1.0849	0.91682	27.455	3	0	Median	0.7449	0.88935	3.8188	2	0	Median	1.0036	1.0031	1.3286	2	0	Median	1.031	1.1249	7.7242	2	0	Median	2983000000	1546500000	1436500000	685780000	317230000	368550000	495470000	333000000	162470000	862470000	449700000	412770000	939240000	446530000	492710000	50702	300	47726	306747;306748;306749;306750;306751;306752;306753;306754;306755;306756	412758;412759;412760;412761;412762;412763;412764;412765;412766;412767;412768;412769;412770;412771;412772	412768			14	
TLATLSENNMEAK	1	Unmodified	1420.6868	0.68679429	4684	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	40.96	40.15	2	1.5995E-16	36545	160511_QHF_FH_JSI12i_1	205.13	175.66			2.0686	1.7407	38.223	5	4	Median	2.1253	1.7407	NaN	1	1	Median	2.2008	2.6201	NaN	1	1	Median	0.97673	0.95994	NaN	1	0	Median	1.6918	1.7993	25.227	2	2	Median	483080000	177320000	305760000	74757000	28847000	45910000	189780000	67734000	122050000	41475000	20604000	20871000	177070000	60138000	116930000	50703	4684	47727	306757;306758;306759;306760;306761	412773;412774;412775;412776;412777	412774			5	
TLATWATK	1	Unmodified	890.48617	0.48616764	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.6	3	4	4					1	5	5	4	5	3	37.832	34.206	2	0.00027163	18796	160513_QHF_FH_JSI11Kac_6	117.04	78.798			1.1245	1.101	34.814	15	6	Median	0.99975	0.83429	39.641	4	2	Median	0.932	1.1024	41.38	4	2	Median	1.1932	1.1736	8.5783	4	1	Median	1.2826	1.3414	38.984	3	1	Plateau	8827600000	3834600000	4993000000	1115800000	424290000	691550000	1641800000	790360000	851410000	3044100000	1335200000	1709000000	3025900000	1284800000	1741100000	50704	2585	47728	306762;306763;306764;306765;306766;306767;306768;306769;306770;306771;306772;306773;306774;306775;306776;306777;306778	412778;412779;412780;412781;412782;412783;412784;412785;412786;412787;412788;412789;412790;412791;412792;412793;412794	412785			17	
TLATWATKELR	1	Acetyl (K)	1330.7245	0.72450043	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	73.514	64.802	2	7.0291E-15	33900	160513_QHF_FH_JSI12Kac_6	157.97	110.1			0.76627	0.72152	23.579	4	0	Median	0.82888	0.70959	NaN	1	0	Median	0.94149	1.1305	NaN	1	0	Median	0.70839	0.68208	NaN	1	0	Median	0.67627	0.73364	NaN	1	0	Median	357000000	208040000	148970000	39842000	26515000	13327000	152370000	75807000	76561000	105610000	68741000	36871000	59180000	36974000	22205000	50705	2585	47729	306779;306780;306781;306782	412795;412796;412797;412798	412797	2562		4	
TLATWATKELRK	2	Acetyl (K)	1458.8195	0.81946344	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	65.933	56.84	2;3	2.2342E-05	29755	160513_QHF_FH_JSI12Kac_6	99.531	71.204			0.93031	0.9918	27.483	6	0	Median	1.333	1.1386	NaN	1	0	Median	1.0594	1.2503	1.2693	2	0	Median	0.73896	0.67853	NaN	1	0	Median	0.74102	0.7924	12.22	2	0	Median	706940000	412870000	294070000	101560000	38655000	62908000	425460000	258460000	167000000	58464000	28541000	29923000	121460000	87217000	34241000	50706	2585	47730	306783;306784;306785;306786;306787;306788;306789	412799;412800;412801;412802;412803;412804;412805;412806	412801	2562		8	
TLATYSYK	1	Unmodified	945.48075	0.48074791	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.586	27.222	2	0.03297	22858	160511_QHF_FH_JSI11i_2	49.423	39.009			2.5988	2.5474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5988	2.5474	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41675000	11970000	29705000	0	0	0	0	0	0	41675000	11970000	29705000	0	0	0	50707	2343	47731	306790	412807	412807			1	
TLAVITK	1	Unmodified	744.47454	0.47454032	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	31.79	31.171	2	0.017953	26330	160511_QHF_FH_JSI11i_2	60.682	12.939			1.0441	0.99731	47.594	7	1	Median	1.0924	0.92891	NaN	1	0	Median	0.79873	0.95755	5.7527	2	0	Median	1.319	1.3114	92.487	2	1	Median	1.3885	1.4978	46.904	2	0	Median	922440000	438970000	483470000	142110000	62560000	79552000	257340000	142900000	114440000	320360000	154330000	166040000	202620000	79177000	123450000	50708	133	47732	306791;306792;306793;306794;306795;306796;306797	412808;412809;412810;412811;412812;412813	412811			6	
TLAVSGLGVVGR	0	Unmodified	1127.6663	0.66625727	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	2	1	3	2	62.494	60.626	2	1.3565E-07	52391	160511_QHF_FH_JSI12i_3	135.55	101.75			1.1848	1.1203	19.333	8	1	Median	1.2231	1.0078	13.936	2	0	Median	0.66504	0.81044	NaN	1	0	Median	1.2453	1.2037	13.835	3	1	Plateau	1.0368	1.1	3.614	2	0	Median	687600000	327460000	360140000	139150000	64981000	74166000	123330000	64831000	58495000	216020000	95014000	121000000	209110000	102630000	106480000	50709	999	47733	306798;306799;306800;306801;306802;306803;306804;306805	412814;412815;412816;412817;412818;412819;412820;412821;412822	412822			9	
TLAWNNITK	1	Unmodified	1059.5713	0.57129425	3866	Q92636	NSMAF	Protein FAN	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	49.963	49.728	2	0.0010036	42640	160511_QHF_FH_JSI12i_3	75.378	35.11			1.287	1.3384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.287	1.3384	NaN	1	1	Median	38483000	16973000	21510000	0	0	0	0	0	0	0	0	0	38483000	16973000	21510000	50710	3866	47734	306806;306807	412823;412824	412824			2	
TLAYLLPAIVHINHQPYLER	0	Unmodified	2360.3005	0.30048612	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	85.522	77.272	3;4	2.0097E-26	42804	160513_QHF_FH_JSI11Kac_6	158.89	132.05			1.0458	1.045	13.308	8	0	Median	1.1904	1.0172	12.594	2	0	Median	1.0617	1.25	5.8312	2	0	Median	1.0703	1.0185	10.702	2	0	Median	0.89764	0.94303	7.4383	2	0	Median	6590700000	3055300000	3535400000	1188800000	491050000	697720000	3785600000	1752100000	2033500000	1080600000	516470000	564120000	535760000	295730000	240040000	50711	3893	47735	306808;306809;306810;306811;306812;306813;306814;306815	412825;412826;412827;412828;412829;412830;412831;412832;412833;412834;412835;412836;412837	412827			13	
TLAYLLPAIVHINHQPYLERGDGPICLVLAPTR	0	Unmodified	3710.013	0.013041655	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			92.198	86.478	5	4.4865E-05	49452	160513_QHF_FH_JSI10Kac_6	59.426	27.668			0.50844	0.60519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50844	0.60519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212390000	134320000	78075000	0	0	0	212390000	134320000	78075000	0	0	0	0	0	0	50712	3893	47736	306816	412838	412838			1	
TLDAEVVEK	1	Unmodified	1002.5233	0.523341	4699	Q9H3P2	NELFA	Negative elongation factor A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			33.072	32.732	2	0.0024796	29240	160511_QHF_FH_JSI10i_1	64.841	31.044			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50713	4699	47737	306817	412839	412839			1	
TLDAMAFNK	1	Unmodified	1009.4903	0.49026674	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	46.484	45.607	2	5.1589E-06	39852	160511_QHF_FH_JSI9i_2	116.73	89.472			1.1412	1.2082	20.356	8	1	Median	1.6193	1.3548	37.695	2	1	Median	0.90252	1.0821	19.102	2	0	Median	1.3055	1.3001	23.061	2	0	Median	1.1224	1.2082	0.71097	2	0	Median	1108400000	509400000	598980000	198230000	85286000	112950000	244090000	134130000	109960000	381050000	158830000	222220000	285010000	131150000	153860000	50714	874	47738	306818;306819;306820;306821;306822;306823;306824;306825	412840;412841;412842;412843;412844;412845;412846;412847;412848;412849;412850;412851;412852;412853;412854	412849			15	
TLDDDVFMPLYPK	1	Unmodified	1552.7483	0.74833192	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	89.937	89.488	2	0.00075941	81171	160511_QHF_FH_JSI10i_1	80.916	71.484			1.2888	1.1645	13.297	3	3	Median	1.4571	1.1645	NaN	1	1	Median	0.9277	1.0102	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2888	1.3177	NaN	1	1	Median	32305000	13370000	18934000	11867000	3134400	8732200	11407000	6183000	5224200	0	0	0	9030800	4052900	4977900	50715	5656	47739	306826;306827;306828;306829	412855;412856;412857;412858	412857			4	
TLDDLFPLR	0	Unmodified	1088.5866	0.58660996	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	81.061	80.278	2	0.0013529	70951	160511_QHF_FH_JSI9i_2	69.423	57.655			1.007	1.0356	9.0805	4	0	Median	1.282	1.1189	NaN	1	0	Median	0.77147	0.90979	NaN	1	0	Median	1.0732	1.074	NaN	1	0	Median	0.94485	0.99861	NaN	1	0	Median	79398000	40590000	38808000	13519000	5755300	7763300	16892000	9589200	7302500	25427000	12847000	12580000	23560000	12398000	11162000	50716	3482	47740	306830;306831;306832;306833	412859;412860;412861;412862	412860			4	
TLDDSANRR	0	Unmodified	1046.5105	0.51048491	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.4		7						2		2	2	2	3	5.9077	3.4698	2;3	3.7933E-06	3454	160511_QHF_FH_JSI10i_2	121.85	96.955			0.88419	0.98037	14.621	9	0	Median	1.1564	0.98543	18.825	2	0	Median	0.83082	1.0299	6.9723	2	0	Median	1.1445	1.1306	10.53	2	0	Median	0.79282	0.84402	7.2928	3	0	Median	1037400000	557920000	479500000	357760000	179190000	178570000	448030000	267710000	180320000	111290000	53274000	58012000	120350000	57744000	62602000	50717	1359	47741	306834;306835;306836;306837;306838;306839;306840;306841;306842	412863;412864;412865;412866;412867;412868;412869	412868			7	
TLDELGIHLTK	1	Unmodified	1238.6871	0.68705229	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	2	1	58.466	57.614	2;3	1.6376E-08	50866	160511_QHF_FH_JSI10i_2	116.03	111.94			0.94019	0.95335	26.435	6	5	Median	0.87689	0.74434	NaN	1	1	Median	0.95156	1.1602	37.239	2	1	Median	1.1368	1.136	15.328	2	2	Median	0.76785	0.85377	NaN	1	1	Median	972180000	458140000	514050000	139310000	54848000	84466000	240200000	107280000	132920000	381850000	181780000	200060000	210830000	114230000	96599000	50718	2609	47742	306843;306844;306845;306846;306847;306848	412870;412871;412872;412873;412874;412875;412876;412877;412878	412875			9	
TLDELSQGTTTVK	1	Unmodified	1391.7144	0.71438925	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.706	38.087	2	0.00024592	34261	160511_QHF_FH_JSI11i_1	77.541	52.415			0.67093	0.70422	9.3782	4	0	Median	0.98339	0.79688	NaN	1	0	Median	0.59195	0.70056	NaN	1	0	Median	0.65402	0.6337	NaN	1	0	Median	0.68828	0.7079	NaN	1	0	Median	381100000	225600000	155500000	68560000	37332000	31228000	112450000	74428000	38021000	98293000	57366000	40927000	101800000	56472000	45328000	50719	1898	47743	306849;306850;306851;306852	412879;412880;412881;412882	412879			4	
TLDGFKK	2	Unmodified	807.44905	0.44905385	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	4	3	4	1	17.152	15.27	2;3	0.0049067	8960	160513_QHF_FH_JSI11Kac_6	75.189	36.398			0.096384	0.10643	148.62	4	4	Linear	1.7914	1.4805	173.95	2	2	Median	0.16652	0.19326	NaN	1	1	Median	2.13	2.1599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5772900000	543080000	5229800000	760280000	178770000	581510000	1184900000	246580000	938280000	1789400000	117730000	1671700000	2038300000	0	2038300000	50720	867	47744	306853;306854;306855;306856;306857;306858;306859;306860;306861;306862;306863;306864	412883;412884;412885;412886;412887;412888;412889;412890;412891;412892;412893;412894	412886			12	
TLDGFKK	2	Acetyl (K)	849.45962	0.45961853	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.321	31.277	2	0.046552	18933	160513_QHF_FH_JSI11Kac_4	73.616	20.062			0.0083516	0.008148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0083516	0.008148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9563700	9321100	242550	0	0	0	0	0	0	9563700	9321100	242550	0	0	0	50721	867	47744	306865	412895	412895			1	
TLDGGLNVIQLETAVGAAIK	1	Unmodified	1982.1048	0.10480601	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		10								2	2	3	3	101.73	101.62	2;3	1.0313E-160	87489	160511_QHF_FH_JSI12i_2	303.36	279.69			0.92109	0.94411	9.8825	8	3	Median	1.0926	0.93302	9.0846	2	0	Median	0.81572	1.0045	11.19	2	1	Median	1.0041	1.0231	8.9407	2	2	Median	0.7805	0.86801	7.5302	2	0	Median	1105400000	603200000	502230000	238140000	121120000	117030000	223200000	131570000	91635000	371480000	184930000	186550000	272600000	165590000	107010000	50722	2772	47745	306866;306867;306868;306869;306870;306871;306872;306873;306874;306875	412896;412897;412898;412899;412900;412901;412902;412903;412904;412905;412906	412897			11	
TLDGIFSEQVAMGYSHSLVIAR	0	Unmodified	2393.2049	0.20493076	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		2	1						2	1	2	1	1	90.789	87.79	3	9.3129E-74	42608	160513_QHF_FH_JSI9Kac_6	207.67	192.25			0.58315	0.68908	45.582	5	0	Median	1.1073	0.94945	NaN	1	0	Median	0.57227	0.68811	0.19963	2	0	Median	0.31857	0.31501	NaN	1	0	Median	0.98745	0.97227	NaN	1	0	Median	292930000	161990000	130940000	105050000	54322000	50728000	100110000	55191000	44920000	44371000	30317000	14054000	43397000	22158000	21239000	50723	5200	47746	306876;306877;306878;306879;306880	412907;412908;412909;412910;412911;412912	412910			6	
TLDINVK	1	Unmodified	801.45962	0.45961853	4429	Q9BTZ2;Q6PKH6	DHRS4;DHRS4L2	Dehydrogenase/reductase SDR family member 4;Dehydrogenase/reductase SDR family member 4-like 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	36.32	35.918	2	0.050044	32172	160511_QHF_FH_JSI11i_1	42.869	2.6663			1.055	1.091	10.602	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0574	1.2442	NaN	1	0	Median	1.0523	1.0087	NaN	1	0	Median	1.0425	1.091	NaN	1	0	Median	131280000	57849000	73429000	0	0	0	46760000	22786000	23975000	46480000	20895000	25585000	38038000	14168000	23870000	50724	4429	47747	306881;306882;306883	412913	412913			1	
TLDLPIYVTR	0	Unmodified	1189.6707	0.67067394	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	77.656	76.96	2	1.8065E-08	68359	160511_QHF_FH_JSI10i_2	126.55	85.117			0.95658	1.0427	5.9117	5	0	Median	1.3232	1.1249	NaN	1	0	Median	0.84263	1.018	3.3832	2	0	Median	0.95658	0.96837	NaN	1	0	Median	0.99266	1.0676	NaN	1	0	Median	1080300000	549080000	531200000	198300000	84181000	114120000	347180000	173350000	173830000	296880000	158230000	138650000	237910000	133310000	104600000	50725	1805	47748	306884;306885;306886;306887;306888	412914;412915;412916;412917;412918;412919;412920	412919			7	
TLDMIKK	2	Unmodified	847.48372	0.48372479	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	1	4	23.639	23.01	2;3	0.0056081	18782	160511_QHF_FH_JSI12i_3	54.549	17.529			0.9282	0.78913	43.556	5	1	Median	0.9282	0.78913	NaN	1	0	Median	1.0275	1.2727	NaN	1	0	Median	1.5232	1.413	NaN	1	1	Median	0.54058	0.56707	6.7849	2	0	Median	636350000	301580000	334770000	60557000	25255000	35301000	78651000	43169000	35482000	140650000	54456000	86199000	356480000	178700000	177780000	50726	1057	47749	306889;306890;306891;306892;306893;306894;306895	412921;412922;412923;412924	412923			4	
TLDMIKK	2	Oxidation (M)	863.47864	0.47863942	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	1	1				By MS/MS	3	0			1										1	22.892	22.874	3	0.025457	18837	160511_QHF_FH_JSI12i_3	37.558	15.427			7.7735	8.124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.7735	8.124	NaN	1	0	Median	59272000	8635900	50636000	0	0	0	0	0	0	0	0	0	59272000	8635900	50636000	50727	1057	47749	306896	412925	412925			1	
TLDNVAIVEEEK	1	Unmodified	1358.6929	0.69292553	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	49.601	49.061	2	5.6642E-05	44292	160511_QHF_FH_JSI11i_1	108.56	91.128			0.48709	0.48135	14.448	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45072	0.4346	NaN	1	1	Median	0.52639	0.53313	NaN	1	1	Median	271740000	176600000	95136000	0	0	0	0	0	0	157920000	101200000	56722000	113820000	75406000	38414000	50728	4582	47750	306897;306898	412926;412927;412928	412926			3	
TLDPDPAIR	0	Unmodified	996.52401	0.52400971	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.44	4	4				1	2			2	3	4	2	37.066	34.417	2	4.3969E-07	30996	160511_QHF_FH_JSI11i_1	138.9	94.448			1.0246	1.0365	10.271	10	0	Median	1.1802	0.98993	10.455	2	0	Median	0.68236	0.82969	11.321	3	0	Plateau	1.084	1.0425	7.5054	3	0	Median	0.95498	1.0255	5.8538	2	0	Median	2802900000	1455000000	1347900000	615780000	284790000	330990000	777510000	468230000	309270000	737230000	361520000	375710000	672400000	340460000	331950000	50729	1844	47751	306899;306900;306901;306902;306903;306904;306905;306906;306907;306908;306909	412929;412930;412931;412932;412933;412934;412935;412936;412937;412938;412939;412940;412941;412942	412930			13	
TLDPDPAIRRPAEK	1	Unmodified	1577.8526	0.85255449	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				28.115	26.747	3	0.0080041	21735	160511_QHF_FH_JSI9i_3	52.576	39.163			1.6643	1.4007	NaN	1	0	Median	1.6643	1.4007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34217000	14245000	19972000	34217000	14245000	19972000	0	0	0	0	0	0	0	0	0	50730	1844	47752	306910	412943	412943			1	
TLDQAIMK	1	Unmodified	918.48445	0.48445308	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	32.807	32.23	2	0.0003324	28335	160511_QHF_FH_JSI9i_1	106.36	78.182			0.82379	0.85121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82379	0.85121	NaN	1	1	Median	73538000	39377000	34161000	0	0	0	0	0	0	0	0	0	73538000	39377000	34161000	50731	3896	47753	306911;306912	412944;412945	412945			2	
TLDQAIMKFHSMK	2	Acetyl (K)	1590.7898	0.78981957	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		72.523	63.104	3	0.00045461	34222	160513_QHF_FH_JSI11Kac_6	78.69	66.307			0.19845	0.19636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19845	0.19636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38239000	30374000	7865000	0	0	0	0	0	0	38239000	30374000	7865000	0	0	0	50732	3896	47754	306913	412946	412946	2990		1	
TLDQISDADNIPGLLVLK	1	Unmodified	1924.0517	0.051707805	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	100.9	100.81	2	2.9566E-98	91470	160511_QHF_FH_JSI10i_1	256.57	225.35			0.90379	0.85592	17.138	3	1	Median	NaN	NaN	NaN	0	0	Median	0.94143	1.1025	NaN	1	0	Median	0.90379	0.85592	NaN	1	1	Median	0.77627	0.79519	NaN	1	0	Median	176240000	90916000	85328000	0	0	0	57958000	29694000	28264000	49173000	24664000	24509000	69113000	36557000	32556000	50733	3117	47755	306914;306915;306916	412947;412948;412949;412950;412951	412950			5	
TLDSVAK	1	Unmodified	732.40177	0.4017693	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.15	3	2				1	3			2	3	2	2	14.492	10.587	2	0.00033514	6991	160513_QHF_FH_JSI12Kac_4	117.16	52.357			0.8179	1.0082	49.668	9	3	Median	1.2593	1.0561	0.21426	2	0	Median	0.77333	0.9297	40.387	3	1	Plateau	0.95938	0.9504	120.49	2	2	Median	0.76714	0.83133	5.1998	2	0	Median	8385800000	4155100000	4230800000	2758900000	1331500000	1427500000	2933100000	1442800000	1490300000	101450000	52061000	49391000	2592400000	1328800000	1263600000	50734	791	47756	306917;306918;306919;306920;306921;306922;306923;306924;306925	412952;412953;412954;412955;412956;412957;412958;412959;412960;412961	412959			10	
TLDSVAKER	1	Acetyl (K)	1059.556	0.55603812	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						2	2				2	1	1	30.41	21.513	2	0.016685	12960	160513_QHF_FH_JSI10Kac_4	56.729	6.1226			0.81778	0.91674	37.612	4	0	Median	NaN	NaN	NaN	0	0	Median	0.93038	1.0915	1.4245	2	0	Median	0.51818	0.49348	NaN	1	0	Median	0.71923	0.77778	NaN	1	0	Median	22334000	12130000	10205000	0	0	0	12644000	6445800	6198700	2326000	1473200	852810	7364000	4210500	3153500	50735	791	47757	306926;306927;306928;306929	412962;412963;412964;412965	412962	418		4	
TLDSWRDEFLIQASPR	0	Unmodified	1932.9694	0.96937516	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							3	2	1		77.11	76.158	3	3.2673E-30	63879	160511_QHF_FH_JSI10i_3	184.99	172.97			1.1177	0.9899	10.566	6	1	Median	1.2282	0.99527	10.437	3	1	Median	0.77593	0.91189	10.844	2	0	Median	1.1501	1.0765	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	340670000	158380000	182290000	179030000	76877000	102160000	125980000	63356000	62619000	35662000	18145000	17517000	0	0	0	50736	1728	47758	306930;306931;306932;306933;306934;306935	412966;412967;412968;412969;412970;412971	412968			6	
TLDTGETPSETK	1	Unmodified	1277.5987	0.59869079	5384	Q9UKZ1	CNOT11	CCR4-NOT transcription complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	19.288	18.664	2	1.1813E-05	16073	160511_QHF_FH_JSI12i_1	117.02	70.56			0.87011	0.87911	34.519	5	2	Median	1.3558	1.1351	59.255	2	2	Median	0.9451	1.1192	NaN	1	0	Median	0.80239	0.77623	NaN	1	0	Median	0.86087	0.87911	NaN	1	0	Median	260570000	127080000	133490000	80449000	30573000	49876000	62168000	32589000	29580000	61126000	34454000	26671000	56825000	29462000	27363000	50737	5384	47759	306936;306937;306938;306939;306940	412972;412973;412974;412975;412976;412977;412978;412979;412980;412981	412975			10	
TLDTIQLAFK	1	Unmodified	1148.6441	0.64412484	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							2	2	1	1	72.959	72.094	2	3.2213E-08	63670	160511_QHF_FH_JSI9i_2	125.82	80.137			0.94886	1.0909	27.134	6	1	Median	1.6628	1.4158	45.769	2	1	Median	0.94886	1.1369	0.11753	2	0	Median	0.90455	0.89366	NaN	1	0	Median	0.90861	1.0476	NaN	1	0	Median	254770000	131230000	123540000	48382000	20671000	27711000	75613000	35192000	40421000	64077000	36278000	27799000	66697000	39086000	27611000	50738	3649	47760	306941;306942;306943;306944;306945;306946	412982;412983;412984;412985;412986;412987;412988;412989	412986			8	
TLDVDATYEIAK	1	Unmodified	1337.6715	0.6714618	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			58.835	58.441	2	0.0010522	51909	160511_QHF_FH_JSI9i_1	68.069	38.982			0.54547	0.61888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54547	0.61888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31689000	18055000	13635000	0	0	0	31689000	18055000	13635000	0	0	0	0	0	0	50739	1148	47761	306947;306948	412990;412991	412991			2	
TLEAEFNSPSPPTPEPGEGPR	0	Unmodified	2208.0335	0.033491558	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	60.642	59.538	2	1.5878E-33	54166	160511_QHF_FH_JSI11i_1	185.67	165.66			1.0911	0.88788	NaN	1	1	Median	1.0911	0.88788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24362000	14114000	10249000	24362000	14114000	10249000	0	0	0	0	0	0	0	0	0	50740	8	47762	306949;306950;306951;306952;306953	412992;412993;412994;412995;412996	412992			5	
TLEAEFNSPSPPTPEPGEGPRK	1	Unmodified	2336.1285	0.12845458	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			52.725	51.785	3	2.8613E-06	45382	160511_QHF_FH_JSI9i_2	72.644	64.69			1.2175	1.512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2175	1.512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24198000	9109700	15088000	0	0	0	24198000	9109700	15088000	0	0	0	0	0	0	50741	8	47763	306954;306955	412997;412998	412997			2	
TLEALEEGGGELNDFVSTAK	1	Unmodified	2079.0008	0.0007944461	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				85.223	84.389	2	7.8837E-24	75118	160511_QHF_FH_JSI9i_1	134.88	103.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50742	16	47764	306956	412999	412999			1	
TLEATPK	1	Unmodified	758.41742	0.41741937	5767				yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	1.43	0.495	4	3								1	2	3	1	23.928	23.451	2	0.04303	20332	160511_QHF_FH_JSI11i_1	45.882	8.2364	+		1.1888	1.1605	49.099	7	0	Median	1.8676	1.6412	NaN	1	0	Median	0.53399	0.60654	61.165	2	0	Median	1.1889	1.1605	22.82	3	0	Plateau	0.95222	0.97614	NaN	1	0	Median	205270000	89901000	115370000	27464000	10270000	17194000	27245000	16536000	10709000	126330000	49957000	76372000	24235000	13137000	11097000	50743	5767	47765	306957;306958;306959;306960;306961;306962;306963	413000	413000			1	
TLEDGKK	2	Unmodified	789.42323	0.42323303	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	4.8539	4.4623	2	0.01033	2348	160511_QHF_FH_JSI11i_2	76.035	32.968			1.1741	1.3292	64.903	4	2	Median	0.90848	0.77959	NaN	1	0	Median	1.4545	1.8085	NaN	1	1	Median	0.94774	0.977	NaN	1	0	Median	3.0082	3.2957	NaN	1	1	Median	948440000	472580000	475850000	192320000	100430000	91889000	176130000	92248000	83886000	395980000	205450000	190530000	184000000	74452000	109550000	50744	741	47766	306964;306965;306966;306967	413001;413002;413003;413004	413003			4	
TLEDPDLNVR	0	Unmodified	1170.5881	0.58806652	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	45.202	42.852	2	5.4891E-05	38366	160511_QHF_FH_JSI10i_1	92.051	71.426			1.0229	1.066	12.542	5	1	Median	1.0752	0.8917	NaN	1	1	Median	0.95065	1.1102	NaN	1	0	Median	1.0229	0.9959	NaN	1	0	Median	1.0788	1.1541	11.227	2	0	Median	898460000	414490000	483970000	160910000	73786000	87129000	247410000	113920000	133480000	263370000	118560000	144810000	226770000	108220000	118550000	50745	3343	47767	306968;306969;306970;306971;306972	413005;413006;413007;413008;413009;413010	413007			6	
TLEDPDLNVRR	0	Unmodified	1326.6892	0.68917755	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.43	2	8	3					2		2	4	5	4	35.468	33.592	2;3	1.1444E-07	29482	160511_QHF_FH_JSI10i_2	96.113	89.677			0.88043	0.98861	14.681	15	2	Median	1.2518	1.1106	10.81	2	0	Median	0.8326	0.99496	4.8312	4	0	Median	0.99018	0.9897	11.207	5	0	Median	0.74496	0.82967	14.028	4	2	Median	1800100000	935010000	865040000	326020000	181500000	144530000	559760000	304730000	255040000	761950000	357930000	404020000	152310000	90853000	61461000	50746	3343	47768	306973;306974;306975;306976;306977;306978;306979;306980;306981;306982;306983;306984;306985;306986;306987	413011;413012;413013;413014;413015;413016;413017;413018;413019;413020;413021;413022;413023;413024;413025	413023			15	
TLEDRFFEHEVK	1	Unmodified	1548.7573	0.75725712	1954	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			3									2	1	42.551	42.476	3;4	9.8114E-05	37439	160511_QHF_FH_JSI11i_3	62.528	46.73			1.1263	1.0411	6.0996	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.13	1.0562	2.0373	2	0	Median	1.1386	1.1704	NaN	1	0	Median	232560000	101380000	131180000	0	0	0	0	0	0	191370000	81478000	109890000	41197000	19905000	21292000	50747	1954	47769	306988;306989;306990	413026;413027	413026			2	
TLEEAIR	0	Unmodified	830.44978	0.44978213	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	22.343	21.708	2	0.0044769	17861	160511_QHF_FH_JSI11i_2	98.418	22.383			1.0084	1.3008	14.219	6	0	Linear	1.37	1.1623	NaN	1	0	Median	0.82965	0.98695	0.64542	2	0	Median	1.0274	1.0211	21.505	2	0	Median	1.1343	1.2743	NaN	1	0	Median	1514900000	613540000	901360000	244520000	82625000	161890000	450280000	219610000	230670000	474620000	176340000	298270000	345490000	134960000	210530000	50748	1723	47770	306991;306992;306993;306994;306995;306996	413028;413029;413030;413031	413030			4	
TLEEAPSAPPQGVTVSK	1	Unmodified	1709.8836	0.88357984	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			45.626	45.2	2	0.00072882	40648	160511_QHF_FH_JSI10i_1	63.181	53.493			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50749	5744	47771	306997	413032	413032			1	
TLEEAVGNIVK	1	Unmodified	1171.6449	0.64485312	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	54.301	50.752	2	2.667E-07	43403	160511_QHF_FH_JSI12i_2	120.99	85.544			0.93706	0.96433	34.555	11	0	Median	1.5925	1.3302	49.135	2	0	Median	0.8176	0.96433	40.578	3	0	Median	0.9588	0.93453	48.107	3	0	Median	0.92382	0.98393	8.107	3	0	Median	1981500000	964620000	1016900000	340560000	164250000	176310000	463890000	214300000	249590000	567770000	271140000	296630000	609310000	314930000	294380000	50750	5708	47772	306998;306999;307000;307001;307002;307003;307004;307005;307006;307007;307008	413033;413034;413035;413036;413037;413038;413039;413040;413041;413042;413043;413044;413045;413046;413047;413048;413049	413036			17	
TLEEDEEELFK	1	Unmodified	1380.6297	0.62965657	1565	P43487	RANBP1	Ran-specific GTPase-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.962	57.31	2	6.2834E-48	52099	160511_QHF_FH_JSI11i_1	219.7	199.4			1.0054	0.92298	9.8492	4	0	Median	1.0611	0.89077	NaN	1	0	Median	0.74747	0.8975	NaN	1	0	Median	0.97126	0.94918	NaN	1	0	Median	1.0408	1.1015	NaN	1	0	Median	9621600000	4445400000	5176200000	1873800000	845880000	1028000000	2830000000	1324100000	1505900000	2101700000	958780000	1142900000	2816100000	1316700000	1499500000	50751	1565	47773	307009;307010;307011;307012	413050;413051;413052;413053;413054;413055;413056;413057;413058;413059;413060;413061;413062;413063;413064;413065	413053			16	
TLEEEAK	1	Unmodified	818.40216	0.40216323	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.73	4	2				4				1	4	3	2	9.8863	6.7554	2	6.141E-05	4443	160513_QHF_FH_JSI12Kac_3	124.59	89.489			0.93506	0.94536	43.427	10	4	Median	1.0494	0.8448	NaN	1	0	Median	0.8283	0.99733	60.047	4	3	Median	0.94805	0.9401	49.1	3	1	Median	0.95513	1.0343	11.928	2	0	Median	6054000000	3248900000	2805100000	1292600000	639890000	652720000	1832300000	1134900000	697390000	1474800000	722280000	752480000	1454300000	751800000	702540000	50752	1436	47774	307013;307014;307015;307016;307017;307018;307019;307020;307021;307022	413066;413067;413068;413069;413070;413071;413072;413073;413074;413075;413076;413077;413078	413074			13	
TLEEGHDFIQEFPGSPAFAALTSIAQK	1	Unmodified	2903.4341	0.43413865	5689	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.51	101.44	3	9.7158E-32	88188	160511_QHF_FH_JSI12i_3	145.6	143.2			0.93683	0.91762	17.942	6	0	Median	0.8527	0.72856	NaN	1	0	Median	0.72883	0.91672	NaN	1	0	Median	1.0411	1.0019	13.362	2	0	Median	0.98997	1.0608	20.372	2	0	Median	1531600000	769290000	762270000	152620000	69146000	83475000	302650000	167730000	134920000	538780000	258340000	280440000	537510000	274080000	263430000	50753	5689	47775	307023;307024;307025;307026;307027;307028	413079;413080;413081;413082;413083	413083			5	
TLEEILLERASQK	1	Unmodified	1528.8461	0.84607213	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	56.519	56.272	3	0.045811	48208	160511_QHF_FH_JSI12i_3	20.427	1.2158			0.67606	0.69634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67606	0.69634	NaN	1	0	Median	501120000	201990000	299130000	0	0	0	0	0	0	0	0	0	501120000	201990000	299130000	50754	484	47776	307029	413084	413084			1	
TLEELDPESR	0	Unmodified	1187.567	0.56699673	3088	Q6P161	MRPL54	39S ribosomal protein L54, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.687	37.074	2	5.6145E-06	33719	160511_QHF_FH_JSI12i_1	105.4	100.24			1.0788	1.1871	18.725	4	2	Median	1.906	1.5633	NaN	1	0	Median	1.0531	1.2206	NaN	1	1	Median	1.0157	0.99716	NaN	1	1	Median	1.105	1.1545	NaN	1	0	Median	554190000	311870000	242320000	62002000	38119000	23883000	153080000	90905000	62170000	184270000	106240000	78024000	154840000	76600000	78240000	50755	3088	47777	307030;307031;307032;307033	413085;413086;413087;413088	413086			2	
TLEEPVSTEK	1	Unmodified	1131.5659	0.5659341	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	25.606	25.068	2	0.00023715	22335	160511_QHF_FH_JSI12i_1	80.755	65.495			0.73149	0.7465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73149	0.7465	NaN	1	0	Median	85477000	48294000	37183000	0	0	0	0	0	0	0	0	0	85477000	48294000	37183000	50756	4290	47778	307034	413089	413089			1	
TLEFFWR	0	Unmodified	997.50215	0.50215205	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	81.341	80.848	2	0.019031	70215	160511_QHF_FH_JSI12i_3	58.981	42.054			0.87925	0.93075	11.523	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96542	0.92907	19.313	2	1	Median	0.87925	0.93075	5.0302	2	0	Median	86104000	38506000	47599000	0	0	0	0	0	0	40582000	17803000	22780000	45522000	20703000	24819000	50757	2755	47779	307035;307036;307037;307038	413090;413091	413091			2	
TLEGDGDQER	0	Unmodified	1118.484	0.48399538	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.5866	8.2264	2	0.025086	6175	160511_QHF_FH_JSI12i_1	42.348	34.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50758	3405	47780	307039	413092	413092			1	
TLEGELHDLR	0	Unmodified	1181.6041	0.60405094	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.63		6						2		2	1	3	2	37.8	34.599	2;3	2.1254E-07	29357	160511_QHF_FH_JSI11i_2	116.52	88.309			1.4154	1.295	34.916	8	1	Median	1.5123	1.295	13.226	2	0	Median	1.7638	2.1277	NaN	1	0	Median	0.92053	0.90653	34.211	3	0	Median	1.1231	1.2392	44.529	2	1	Median	757030000	359340000	397690000	136880000	55672000	81213000	57035000	25021000	32014000	504940000	257680000	247260000	58165000	20968000	37197000	50759	791	47781	307040;307041;307042;307043;307044;307045;307046;307047	413093;413094;413095;413096;413097;413098;413099;413100;413101;413102	413097			10	
TLEGELHDLRGQVAK	1	Unmodified	1664.8846	0.8845829	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		40.959	40.959	4	0.030498	35986	160511_QHF_FH_JSI11i_3	27.208	17.92			1.4128	1.3413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4128	1.3413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	130120000	46329000	83793000	0	0	0	0	0	0	130120000	46329000	83793000	0	0	0	50760	791	47782	307048	413103	413103			1	
TLEGQAQETAVAQR	0	Unmodified	1500.7532	0.75323437	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			24.449	23.685	2	3.5281E-06	20334	160511_QHF_FH_JSI9i_1	122.42	107.75			0.97349	0.93236	27.138	2	1	Median	1.4045	1.1296	NaN	1	1	Median	0.67477	0.76957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45195000	24064000	21131000	19650000	6284700	13365000	25545000	17779000	7766200	0	0	0	0	0	0	50761	3405	47783	307049;307050;307051	413104;413105;413106	413105			3	
TLEHLQLSHDQLLEVK	1	Unmodified	1902.0211	0.021076378	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.2	0.4		4	1								2	2	1	60.886	60.174	3;4	1.7532E-05	52855	160511_QHF_FH_JSI11i_3	74.257	56.556			0.77033	0.94191	26.485	5	2	Median	NaN	NaN	NaN	0	0	Median	0.63786	0.7664	29.162	2	1	Median	1.0049	0.95979	34.012	2	1	Median	0.96252	1.0383	NaN	1	0	Median	232310000	130750000	101560000	0	0	0	71544000	43732000	27813000	103700000	55926000	47774000	57066000	31093000	25972000	50762	1785	47784	307052;307053;307054;307055;307056	413107;413108;413109;413110;413111	413108			5	
TLEIALEQKK	2	Unmodified	1171.6812	0.68123863	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	38.434	38.254	3	0.024605	32665	160511_QHF_FH_JSI12i_3	38.634	23.432			1.1469	1.2192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1469	1.2192	NaN	1	0	Median	47343000	18268000	29075000	0	0	0	0	0	0	0	0	0	47343000	18268000	29075000	50763	3395	47785	307057	413112	413112			0	
TLELQGLINDLQR	0	Unmodified	1511.8308	0.83075641	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	2	3	96.012	95.768	2;3	9.3941E-06	82528	160511_QHF_FH_JSI12i_2	87.831	68.772			1.0876	1.0948	21.901	8	2	Median	1.1687	1.0149	16.864	2	1	Median	0.836	1.0179	NaN	1	0	Median	1.0876	1.0785	2.4522	2	0	Median	1.3304	1.4889	24.427	3	1	Median	299090000	110620000	188470000	67438000	26754000	40684000	26909000	13864000	13045000	96204000	28994000	67210000	108540000	41006000	67533000	50764	1085	47786	307058;307059;307060;307061;307062;307063;307064;307065	413113;413114;413115;413116;413117;413118;413119;413120;413121;413122;413123	413114			11	
TLENDEEQEALPSLDK	1	Unmodified	1829.8531	0.85306758	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.366	54.708	2	1.5747E-80	48515	160511_QHF_FH_JSI9i_1	242.79	227.25			1.0094	1.0432	14.924	4	0	Median	0.98265	0.82117	NaN	1	0	Median	0.98614	1.169	NaN	1	0	Median	1.0569	1.0266	NaN	1	0	Median	1.0331	1.06	NaN	1	0	Median	407510000	199340000	208170000	95974000	48011000	47963000	111580000	52862000	58720000	88128000	45181000	42947000	111820000	53282000	58540000	50765	2970	47787	307066;307067;307068;307069	413124;413125;413126;413127;413128;413129;413130;413131;413132;413133	413132			10	
TLENPVNVYNPSHSDSLASQQSVASHPR	0	Unmodified	3033.454	0.45403924	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.5	0.5		2	2							1	1	1	1	53.527	53.142	3;4	0.014591	45587	160511_QHF_FH_JSI12i_3	30.271	27.907			0.93719	1.0801	9.2283	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.9181	1.1261	NaN	1	0	Median	1.1009	1.0096	NaN	1	0	Median	0.93719	0.93738	NaN	1	0	Median	406170000	205800000	200380000	0	0	0	162580000	78133000	84447000	151000000	74100000	76898000	92596000	53562000	39034000	50766	235	47788	307070;307071;307072;307073	413134;413135;413136	413136			1	
TLEPQELAR	0	Unmodified	1055.5611	0.56112349	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	36.059	35.348	2	0.0004762	30065	160511_QHF_FH_JSI12i_2	93.162	51.935			1.1719	1.1459	18.509	7	1	Median	1.4125	1.2033	NaN	1	0	Median	1.1184	1.3384	27.52	2	0	Median	1.2479	1.248	12.071	2	0	Median	0.92311	0.99262	13.13	2	1	Median	791170000	385860000	405310000	66618000	30561000	36057000	240470000	135320000	105150000	301830000	134160000	167670000	182250000	85817000	96437000	50767	3801	47789	307074;307075;307076;307077;307078;307079;307080	413137;413138;413139;413140;413141;413142;413143;413144	413140			8	
TLEPSGEASTSLGR	0	Unmodified	1403.6892	0.68923713	3390	Q86YV9	HPS6	Hermansky-Pudlak syndrome 6 protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.911	32.571	2	0.015142	29108	160511_QHF_FH_JSI10i_1	45.879	18.137			1.1952	1.3406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1952	1.3406	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33341000	14389000	18952000	0	0	0	33341000	14389000	18952000	0	0	0	0	0	0	50768	3390	47790	307081	413145	413145			1	
TLEPVKPPTVPNDYMTSPAR	1	Unmodified	2212.1198	0.11980414	3484	Q8IZP0	ABI1	Abl interactor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	63.839	63.189	3	5.254E-05	54282	160511_QHF_FH_JSI12i_2	61.181	42.885			1.0943	1.0638	9.6882	6	2	Median	1.1683	0.98404	NaN	1	0	Median	0.83891	1.0329	NaN	1	0	Median	1.1023	1.0866	5.1154	2	2	Median	1.0537	1.1845	13.085	2	0	Median	461020000	245570000	215440000	75579000	35465000	40114000	66422000	42636000	23786000	195160000	104770000	90388000	123860000	62703000	61156000	50769	3484	47791	307082;307083;307084;307085;307086;307087;307088	413146;413147;413148;413149;413150;413151;413152;413153	413149			8	
TLEQHDNIVTHYK	1	Unmodified	1596.7896	0.78961988	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.78	0.416		2	7								1	5	3	24.387	24.22	2;3;4	8.7999E-11	19900	160511_QHF_FH_JSI12i_3	159.94	135.6			1.0696	1.0811	9.8239	8	1	Median	NaN	NaN	NaN	0	0	Median	0.77897	0.97822	NaN	1	0	Median	1.2546	1.187	6.4263	4	1	Median	1.0035	1.0246	9.465	3	0	Median	953030000	490160000	462880000	0	0	0	105130000	70914000	34211000	401000000	194340000	206660000	446910000	224900000	222010000	50770	446	47792	307089;307090;307091;307092;307093;307094;307095;307096;307097	413154;413155;413156;413157;413158;413159;413160;413161;413162	413159			8	
TLESQAVETEK	1	Unmodified	1233.6089	0.60886155	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		20.147	19.695	2	6.9289E-05	16834	160511_QHF_FH_JSI11i_1	101.39	77.558			1.8155	1.7258	84.933	4	3	Median	1.3173	1.0799	NaN	1	0	Median	1.0455	1.2041	126.29	2	2	Median	2.8472	2.7582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	207770000	83292000	124480000	70273000	35509000	34765000	77064000	30976000	46088000	60438000	16808000	43630000	0	0	0	50771	5054	47793	307098;307099;307100;307101	413163;413164;413165;413166	413163			4	
TLESQLASVR	0	Unmodified	1102.5982	0.59823728	2933	Q5T0F9	CC2D1B	Coiled-coil and C2 domain-containing protein 1B	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		49.948	39.357	2	0.045601	23182	160513_QHF_FH_JSI11Kac_4	39.022	8.7675			1.2705	1.2456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2705	1.2456	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5470600	1963200	3507500	0	0	0	0	0	0	5470600	1963200	3507500	0	0	0	50772	2933	47794	307102	413167	413167			1	
TLESSIQGLR	0	Unmodified	1102.5982	0.59823728	3879	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		40.128	39.67	2	0.00052385	34071	160511_QHF_FH_JSI11i_2	87.476	37.516			0.81653	0.81732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81653	0.81732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106580000	57409000	49172000	0	0	0	0	0	0	106580000	57409000	49172000	0	0	0	50773	3879	47795	307103	413168	413168			1	
TLESTWEKPQELK	2	Unmodified	1587.8144	0.81443765	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	3	2	43.772	43.533	2;3	8.742E-09	37436	160511_QHF_FH_JSI11i_2	112.13	72.501			0.35761	0.34861	16.791	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33435	0.30958	NaN	1	1	Median	0.3825	0.39256	NaN	1	1	Median	365290000	258530000	106760000	0	0	0	0	0	0	96404000	71903000	24501000	268890000	186630000	82260000	50774	203	47796	307104;307105;307106;307107;307108;307109	413169;413170;413171;413172;413173;413174	413171			6	
TLESVDPLGGLNTIDILTAIR	0	Unmodified	2210.2158	0.21581302	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	102.39	102.29	2	0	90101	160511_QHF_FH_JSI11i_2	398.79	327.85			0.97	0.95058	18.003	4	0	Median	1.0088	0.86202	NaN	1	0	Median	0.65476	0.81033	NaN	1	0	Median	1.1684	1.1991	NaN	1	0	Median	0.93265	1.0482	NaN	1	0	Median	611080000	299060000	312020000	111770000	47243000	64528000	112670000	65871000	46795000	227160000	106270000	120890000	159480000	79675000	79807000	50775	133	47797	307110;307111;307112;307113	413175;413176	413175			2	
TLETLIR	0	Unmodified	844.50182	0.5018177	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	2	2	42.941	42.134	2	0.0011164	36167	160511_QHF_FH_JSI11i_2	124.37	59.57			1.2934	1.2351	16.241	8	0	Median	1.4695	1.2351	7.4812	2	0	Median	0.81392	0.9859	1.9712	2	0	Median	1.1973	1.207	25.206	2	0	Median	1.2934	1.3724	2.278	2	0	Median	1779000000	881060000	897920000	331800000	129060000	202740000	401440000	222230000	179220000	648060000	336480000	311580000	397670000	193290000	204380000	50776	1254	47798	307114;307115;307116;307117;307118;307119;307120;307121	413177;413178;413179;413180;413181;413182;413183;413184;413185	413184			9	
TLETLPEK	1	Unmodified	929.50696	0.50696266	901	P08397	HMBS	Porphobilinogen deaminase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	30.717	29.797	2	0.005541	26379	160511_QHF_FH_JSI11i_1	62.546	24.308			1.096	1.0015	9.819	2	0	Median	1.2985	1.0735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92503	0.93431	NaN	1	0	Median	250880000	109780000	141110000	120390000	54647000	65742000	0	0	0	0	0	0	130490000	55131000	75363000	50777	901	47799	307122;307123;307124	413186;413187;413188	413186			3	
TLETQSALGPALQAAFK	1	Unmodified	1744.9359	0.93594977	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	84.581	83.754	2	4.5411E-10	73745	160511_QHF_FH_JSI11i_2	138.94	121.5			0.98784	1.0163	14.566	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.16	1.1265	NaN	1	0	Median	0.84126	0.91679	NaN	1	0	Median	26686000	13957000	12729000	0	0	0	0	0	0	14230000	6910800	7319000	12456000	7046100	5409900	50778	700	47800	307125;307126	413189	413189			0	
TLETVPLER	0	Unmodified	1056.5815	0.58152458	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			4	2	4	1	45.593	42.631	2	6.2778E-08	36675	160511_QHF_FH_JSI11i_2	141.39	103.83			0.90287	0.91442	24.356	10	2	Median	1.1266	0.94126	35.24	4	1	Median	0.72994	0.88067	2.5987	2	0	Median	0.89945	0.93218	4.3775	3	1	Plateau	0.57187	0.64451	NaN	1	0	Median	2083900000	1033800000	1050100000	642930000	273350000	369580000	248940000	132810000	116130000	905190000	465990000	439190000	286850000	161600000	125250000	50779	1212	47801	307127;307128;307129;307130;307131;307132;307133;307134;307135;307136;307137	413190;413191;413192;413193;413194;413195;413196;413197;413198;413199;413200;413201;413202;413203;413204;413205	413203			16	
TLETVPLERK	1	Unmodified	1184.6765	0.6764876	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	32.889	32.474	2;3	1.4439E-07	27484	160511_QHF_FH_JSI12i_3	120.15	80.11			0.97451	1.5641	46.623	5	2	Linear	NaN	NaN	NaN	0	0	Median	1.6691	2.0127	35.656	2	1	Median	3.6334	3.3701	NaN	1	1	Median	1.2483	1.2586	26.774	2	0	Median	362270000	194220000	168050000	0	0	0	139120000	60625000	78497000	15596000	3940600	11656000	207550000	129660000	77893000	50780	1212	47802	307138;307139;307140;307141;307142;307143	413206;413207;413208;413209;413210;413211;413212	413211			7	
TLEVALLLDTFFRPLNVR	0	Unmodified	2116.2045	0.20446047	2417	Q13444	ADAM15	Disintegrin and metalloproteinase domain-containing protein 15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	99.687	91.796	2;3	2.9438E-84	55062	160513_QHF_FH_JSI10Kac_6	270.27	241.5			1.0421	0.979	26.162	5	1	Median	1.4345	1.2238	NaN	1	0	Median	0.71236	0.84542	9.1537	2	1	Median	1.0421	0.979	NaN	1	0	Median	1.4456	1.5332	NaN	1	0	Median	2586600000	1280500000	1306100000	637190000	257460000	379730000	1430500000	766440000	664050000	144180000	81090000	63091000	374710000	175510000	199200000	50781	2417	47803	307144;307145;307146;307147;307148	413213;413214;413215;413216;413217	413217			5	
TLEVLEALCK	1	Unmodified	1174.6268	0.62676022	4097	Q96GS4	C17orf59	Uncharacterized protein C17orf59	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	68.02	67.216	2	0.012528	61229	160511_QHF_FH_JSI12i_1	45.081	0			0.73988	0.68666	27.189	2	0	Median	0.68603	0.56656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79797	0.83222	NaN	1	0	Median	132680000	69634000	63048000	53507000	28499000	25008000	0	0	0	0	0	0	79175000	41135000	38040000	50782	4097	47804	307149;307150	413218;413219	413218			2	
TLFANIVLSGGSTLFK	1	Unmodified	1666.9294	0.92940782	1524	P42025	ACTR1B	Beta-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			1						3	1	1	1	1	96.508	91.475	2	9.3768E-19	88379	160511_QHF_FH_JSI12i_3	205.86	158.57			1.0153	1.1557	55.163	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0153	1.2148	NaN	1	0	Median	1.1849	1.1557	NaN	1	0	Median	0.45507	0.45619	NaN	1	1	Median	274620000	165800000	108820000	0	0	0	63580000	36995000	26585000	87172000	48977000	38195000	123870000	79828000	44043000	50783	1524	47805	307151;307152;307153;307154	413220;413221;413222;413223;413224;413225	413223			6	
TLFANTGGTVK	1	Unmodified	1107.5924	0.59242362	5363	Q9UKA9	PTBP2	Polypyrimidine tract-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								1	3	3	36.051	35.48	2	9.6591E-05	30064	160511_QHF_FH_JSI12i_3	98.943	75.514			1.308	1.4274	17.13	5	5	Median	NaN	NaN	NaN	0	0	Median	1.041	1.2908	NaN	1	1	Median	1.2709	1.2148	27.602	2	2	Median	1.4008	1.4758	4.7155	2	2	Median	120790000	51915000	68875000	0	0	0	22216000	11185000	11031000	46745000	21017000	25727000	51831000	19713000	32118000	50784	5363	47806	307155;307156;307157;307158;307159;307160;307161	413226;413227;413228;413229;413230;413231;413232	413231			7	
TLFAYEGTNEDELTFK	1	Unmodified	1876.8731	0.87307474	5664	Q9Y5K6	CD2AP	CD2-associated protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.92	79.767	2	3.6381E-11	68947	160511_QHF_FH_JSI12i_2	107.18	91.974			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50785	5664	47807	307162	413233	413233			1	
TLFEAMPEESDDFSQYQLK	1	Unmodified	2277.0147	0.014729951	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.996	87.519	3	0.0004562	79723	160511_QHF_FH_JSI12i_1	58.672	56.339			0.78401	0.77171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78401	0.77171	NaN	1	1	Median	11784000	9199600	2584600	0	0	0	0	0	0	0	0	0	11784000	9199600	2584600	50786	1311	47808	307163	413234	413234			1	
TLFGFLGK	1	Unmodified	881.50109	0.50108942	2230	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	6.18		4	8				1	2	4	4	6	4	5	80.953	77.093	1;2	0.0036573	39989	160513_QHF_FH_JSI11Kac_6	85.265	45.723			0.95904	1.0431	18.812	19	0	Median	1.3413	1.069	21.662	4	0	Median	0.89574	1.0423	14.968	6	0	Median	1.1564	1.1026	7.1127	4	0	Median	1.1935	0.9088	23.863	5	0	Plateau	5492400000	2843700000	2648600000	1700100000	814340000	885800000	992190000	540900000	451300000	1103100000	555950000	547130000	1696900000	932550000	764390000	50787	2230	47809	307164;307165;307166;307167;307168;307169;307170;307171;307172;307173;307174;307175;307176;307177;307178;307179;307180;307181;307182	413235;413236;413237;413238;413239;413240;413241;413242;413243;413244;413245;413246;413247;413248;413249;413250;413251;413252;413253;413254;413255;413256;413257	413243			22	
TLFGLHLSQK	1	Unmodified	1142.6448	0.64479354	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	5	3	4	4	59.927	55.333	2;3	5.2733E-10	48661	160511_QHF_FH_JSI11i_3	130.01	106.63			1.058	0.96308	27.867	16	1	Median	1.0911	0.90917	41.282	5	1	Median	0.82073	0.91507	3.3405	3	0	Plateau	1.1483	1.0686	19.698	4	0	Median	0.94264	0.98166	24.283	4	0	Median	8400100000	4060600000	4339400000	3414400000	1571200000	1843300000	2457700000	1296500000	1161200000	1574600000	687780000	886810000	953300000	505210000	448090000	50788	1381	47810	307183;307184;307185;307186;307187;307188;307189;307190;307191;307192;307193;307194;307195;307196;307197;307198	413258;413259;413260;413261;413262;413263;413264;413265;413266;413267;413268;413269;413270;413271;413272;413273;413274;413275;413276;413277;413278;413279;413280;413281;413282;413283;413284;413285;413286;413287;413288;413289;413290;413291;413292;413293;413294;413295;413296;413297;413298;413299;413300	413261			43	
TLFGRDLLDDLK	1	Unmodified	1404.7613	0.76127986	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							2	2	1		84.612	83.752	3	0.00053192	69927	160511_QHF_FH_JSI10i_3	64.121	55.421			1.1348	1.0766	18.851	5	0	Median	1.12	0.9398	12.947	2	0	Median	1.1155	1.3354	2.6242	2	0	Median	1.1458	1.0766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	176020000	81330000	94690000	45567000	21972000	23595000	56019000	24024000	31995000	74434000	35334000	39100000	0	0	0	50789	916	47811	307199;307200;307201;307202;307203	413301;413302;413303;413304;413305;413306;413307;413308;413309;413310;413311	413303			11	
TLFGTNLASQFDGLSSNPSK	1	Unmodified	2083.0222	0.02219859	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		88.583	88.583	2	2.1092E-08	79005	160511_QHF_FH_JSI11i_3	142.45	130.29			1.1507	1.0852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1507	1.0852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11961000	5629300	6331900	0	0	0	0	0	0	11961000	5629300	6331900	0	0	0	50790	1549	47812	307204	413312;413313	413312			2	
TLFHFGNCFALAYFPYFITYK	1	Unmodified	2619.2661	0.26607445	4476	Q9BVK8	TMEM147	Transmembrane protein 147	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	16	0									3	1		1	1	97.609	88.291	3	8.9047E-08	50577	160513_QHF_FH_JSI9Kac_6	83.245	69.23			1.4001	1.2677	42.803	3	0	Median	1.4852	1.2677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70511	0.66501	NaN	1	0	Median	1.4001	1.4947	NaN	1	0	Median	380390000	181330000	199060000	147690000	70544000	77142000	0	0	0	135460000	71138000	64325000	97240000	39648000	57592000	50791	4476	47813	307205;307206;307207	413314	413314			1	
TLFIFPGLLPEAPSK	1	Unmodified	1628.9178	0.91778051	4909	Q9NPR9	GPR108	Protein GPR108	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	102.04	102.04	2	0.00033372	88784	160511_QHF_FH_JSI12i_3	103.46	78.609			1.641	1.6115	8.2718	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8124	1.7086	NaN	1	0	Median	1.4857	1.52	NaN	1	0	Median	98524000	41467000	57057000	0	0	0	0	0	0	31074000	14458000	16616000	67450000	27009000	40441000	50792	4909	47814	307208;307209	413315	413315			1	
TLFIFPGLLPEAPSKPGLPK	2	Unmodified	2121.2238	0.22379893	4909	Q9NPR9	GPR108	Protein GPR108	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		101.47	101.37	3	0.0010394	90498	160511_QHF_FH_JSI11i_3	49.768	41.776			1.0423	0.90831	3.4115	2	2	Median	1.1581	0.93049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93812	0.88666	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	336270000	166650000	169620000	125200000	51093000	74108000	0	0	0	211070000	115560000	95513000	0	0	0	50793	4909	47815	307210;307211	413316;413317	413316			2	
TLFILFR	0	Unmodified	908.54837	0.54837396	4999	Q9NUD5	ZCCHC3	Zinc finger CCHC domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	86.693	78.421	2	2.5704E-07	44757	160513_QHF_FH_JSI10Kac_6	137.83	133.98			1.0494	1.2957	17.137	4	0	Linear	1.2338	1.0572	NaN	1	0	Median	1.1129	1.2874	NaN	1	0	Median	0.98956	0.93966	NaN	1	0	Median	0.82154	0.86798	NaN	1	0	Median	240250000	122100000	118150000	51421000	21929000	29493000	108750000	57067000	51685000	48509000	27897000	20611000	31566000	15202000	16364000	50794	4999	47816	307212;307213;307214;307215	413318;413319;413320;413321;413322;413323	413323			6	
TLFLAVQVQNEEGK	1	Unmodified	1574.8304	0.83042206	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	1	4	71.29	70.554	2;3	8.8194E-30	60910	160511_QHF_FH_JSI12i_3	187.85	133.25			0.93264	0.83954	25.637	9	2	Median	0.79866	0.71072	20.114	2	0	Median	0.68373	0.83954	32.619	3	1	Median	1.121	1.0368	NaN	1	0	Median	0.97321	0.97563	27.873	3	1	Median	568400000	311170000	257230000	60610000	38282000	22328000	76333000	47807000	28526000	114080000	56946000	57133000	317370000	168130000	149240000	50795	694	47817	307216;307217;307218;307219;307220;307221;307222;307223;307224;307225	413324;413325;413326;413327;413328;413329;413330;413331;413332;413333;413334;413335;413336;413337	413334			13	
TLFLELIR	0	Unmodified	1003.6066	0.60661712	4094	Q96GM8	TOE1	Target of EGR1 protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	1	1	3	3	91.561	88.979	2	4.6632E-05	80172	160511_QHF_FH_JSI12i_3	136.16	30.764			1.0237	1.0154	11.907	8	0	Median	1.2976	1.1171	NaN	1	0	Median	0.85296	1.035	NaN	1	0	Median	1.0383	0.96093	5.0226	3	0	Plateau	1.0552	1.061	18.55	3	0	Median	283850000	138670000	145190000	11801000	5590800	6210500	14805000	7597900	7207100	129050000	67094000	61961000	128190000	58383000	69808000	50796	4094	47818	307226;307227;307228;307229;307230;307231;307232;307233	413338;413339;413340;413341;413342;413343	413342			6	
TLFLSIPESR	0	Unmodified	1161.6394	0.63937381	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	73.603	73.603	2	0.0047585	65594	160511_QHF_FH_JSI11i_3	64.654	41.914			0.98779	0.91773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98779	0.91773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49333000	11397000	37936000	0	0	0	0	0	0	49333000	11397000	37936000	0	0	0	50797	2667	47819	307234;307235	413344;413345	413344			2	
TLFPGTDHIDQLK	1	Unmodified	1483.7671	0.76709352	2736	Q16539	MAPK14	Mitogen-activated protein kinase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	60.552	60.024	2;3	0.0012527	52848	160511_QHF_FH_JSI9i_2	61.353	35.415			1.2102	1.1254	55.108	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2102	1.1254	NaN	1	0	Median	1.6987	1.7596	68.863	2	1	Median	146300000	66894000	79402000	0	0	0	0	0	0	68009000	26117000	41892000	78287000	40777000	37510000	50798	2736	47820	307236;307237;307238;307239;307240	413346;413347;413348;413349	413348			3	
TLFPLIEAK	1	Unmodified	1030.6063	0.60628277	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.91	3	4	3					4		3	4	4	3	80.462	76.98	2	1.3024E-06	70357	160511_QHF_FH_JSI11i_3	133.23	133.23			1.0414	1.0707	9.0598	14	0	Median	1.2853	1.065	5.7883	3	0	Median	0.88816	1.0674	7.769	4	0	Median	1.1833	1.1294	14.073	4	0	Median	1.0146	1.1274	6.3649	3	0	Plateau	5078300000	2483600000	2594700000	881470000	342140000	539330000	1062300000	544020000	518300000	2149200000	1065900000	1083300000	985320000	531540000	453790000	50799	1024	47821	307241;307242;307243;307244;307245;307246;307247;307248;307249;307250;307251;307252;307253;307254	413350;413351;413352;413353;413354;413355;413356;413357;413358;413359;413360;413361;413362;413363;413364;413365;413366;413367;413368;413369;413370;413371;413372;413373	413351			24	
TLFQIQAER	0	Unmodified	1104.5928	0.59275797	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	52.112	51.213	2	0.00010641	43862	160511_QHF_FH_JSI12i_3	93.178	70.107			0.89198	0.9726	38.625	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0853	1.278	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73307	0.74015	NaN	1	0	Median	163080000	87219000	75862000	0	0	0	77016000	33219000	43797000	0	0	0	86065000	54000000	32065000	50800	2728	47822	307255;307256	413374;413375;413376	413376			3	
TLFQNDFWGTPMSEER	0	Unmodified	1956.8676	0.8676122	3195	Q6ZXV5	TMTC3	Transmembrane and TPR repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	3	3	86.965	86.259	2	1.4757E-21	75900	160511_QHF_FH_JSI11i_2	157.52	144.75			1.0112	1.1307	19.656	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76703	0.98395	NaN	1	0	Median	1.3331	1.2993	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25375000	15318000	10057000	0	0	0	13085000	7022000	6062600	7118800	3124300	3994500	5171400	5171400	0	50801	3195	47823	307257;307258;307259;307260;307261;307262;307263;307264	413377;413378;413379;413380;413381;413382;413383;413384;413385	413381			9	
TLFQPQTGAYQTLAK	1	Unmodified	1665.8726	0.87262123	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.73	4	6	3							2	4	3	4	64.232	63.519	2;3	2.4341E-15	55417	160511_QHF_FH_JSI11i_2	167.44	140.11			0.82658	0.96826	39.933	13	4	Median	1.3287	1.1385	1.3017	2	0	Median	0.82004	1.0084	65.355	4	1	Median	1.0496	0.96826	22.225	3	1	Plateau	0.75721	0.81109	24.704	4	2	Median	848800000	435920000	412880000	135920000	56318000	79606000	188500000	111550000	76947000	263420000	136250000	127170000	260950000	131790000	129160000	50802	1814	47824	307265;307266;307267;307268;307269;307270;307271;307272;307273;307274;307275;307276;307277	413386;413387;413388;413389;413390;413391;413392;413393;413394;413395;413396;413397;413398;413399;413400;413401;413402;413403	413399			18	
TLFQTKNSVMR	1	Acetyl (K)	1365.7075	0.70747015	1126	P17812	CTPS1	CTP synthase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.851	52.144	2	0.0051708	28231	160513_QHF_FH_JSI11Kac_6	70.977	42.25			0.15364	0.1544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15364	0.1544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7663400	6699800	963600	0	0	0	0	0	0	7663400	6699800	963600	0	0	0	50803	1126	47825	307278	413404	413404	972		1	
TLFSNIVLSGGSTLFK	1	Unmodified	1682.9243	0.92432245	1941	P61163	ACTR1A	Alpha-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.5	6.5			4						4	2	2	2	2	96.492	92.288	2	1.1078E-97	83763	160511_QHF_FH_JSI10i_3	259.48	211.55			0.90688	0.94271	14.821	8	0	Median	1.3338	1.0962	14.762	2	0	Median	0.91865	1.0785	1.0198	2	0	Median	0.85886	0.82849	11.69	2	0	Median	0.85693	0.88677	1.0975	2	0	Median	3844700000	1982600000	1862000000	761850000	323890000	437960000	1077000000	565430000	511560000	745990000	420610000	325380000	1259800000	672700000	587150000	50804	1941	47826	307279;307280;307281;307282;307283;307284;307285;307286	413405;413406;413407;413408;413409;413410;413411	413405			7	
TLFSTHYHSLVEDYSQNVAVR	0	Unmodified	2465.1975	0.19753719	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			2						2	3	1			72.878	68.15	3	1.1939E-73	36037	160513_QHF_FH_JSI10Kac_6	210.06	195.44			0.86162	0.7691	38.802	4	1	Median	1.0059	0.86057	44.45	3	1	Median	0.58238	0.68735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	116550000	59996000	56558000	69455000	30112000	39343000	47100000	29885000	17215000	0	0	0	0	0	0	50805	1778	47827	307287;307288;307289;307290	413412;413413;413414	413414			3	
TLFSVINNGHNQK	1	Unmodified	1470.7579	0.75792582	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		40.997	40.216	3	1.3684E-05	32980	160511_QHF_FH_JSI9i_3	108.24	95.824			0.95865	0.85079	16.746	2	0	Median	0.9157	0.75578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0036	0.95774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152540000	80697000	71846000	70867000	37054000	33814000	0	0	0	81676000	43644000	38032000	0	0	0	50806	4988	47828	307291;307292	413415;413416	413416			2	
TLFSVINNSHNK	1	Unmodified	1372.7099	0.709913	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				42.457	40.897	2	1.5784E-05	33437	160511_QHF_FH_JSI9i_3	93.096	51.647			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50807	2789	47829	307293	413417	413417			1	
TLFVGLPPPADR	0	Unmodified	1281.7081	0.70812208	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	72.558	71.752	2	0.00013285	61778	160511_QHF_FH_JSI12i_2	83	57.614			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50808	285	47830	307294;307295;307296	413418;413419;413420	413418			3	
TLFVSGLPLDIKPR	1	Unmodified	1554.9134	0.91336383	3928	Q93062	RBPMS	RNA-binding protein with multiple splicing	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	87.817	87.213	3	3.8769E-05	71276	160511_QHF_FH_JSI9i_3	112.42	101.48			0.91317	0.94117	5.3554	4	0	Median	1.1493	0.93704	NaN	1	0	Median	0.83936	0.95727	NaN	1	0	Median	0.978	0.94532	NaN	1	0	Median	0.85264	0.8516	NaN	1	0	Median	178800000	94504000	84293000	37418000	16573000	20846000	36331000	17679000	18653000	62297000	37068000	25229000	42750000	23185000	19565000	50809	3928	47831	307297;307298;307299;307300	413421;413422;413423;413424;413425;413426	413424			6	
TLFVSGLPVDIKPR	1	Unmodified	1540.8977	0.89771377	3185	Q6ZRY4	RBPMS2	RNA-binding protein with multiple splicing 2	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		3	0			3							1	1	1		81.433	80.556	3	0.0016096	71955	160511_QHF_FH_JSI11i_3	55.414	48.531			0.49855	0.47888	46.97	3	0	Plateau	1.4002	1.1745	NaN	1	0	Median	0.79718	0.89433	NaN	1	0	Median	0.49855	0.4705	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81356000	46899000	34456000	15511000	8123800	7387500	22779000	12686000	10093000	43065000	26089000	16976000	0	0	0	50810	3185	47832	307301;307302;307303	413427	413427			1	
TLFYGSFHK	1	Unmodified	1098.5498	0.54983053	4305	Q99715	COL12A1	Collagen alpha-1(XII) chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1		1	2	1	48.194	44.871	2;3	0.00020894	38036	160511_QHF_FH_JSI12i_3	72.275	57.76			0.9788	1.0163	77.413	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2588	2.1082	91.849	2	1	Median	0.9788	1.0163	NaN	1	0	Median	127760000	66288000	61467000	0	0	0	0	0	0	52920000	23142000	29778000	74835000	43146000	31689000	50811	4305	47833	307304;307305;307306;307307	413428;413429;413430;413431	413431			4	
TLGAIVR	0	Unmodified	728.45447	0.45447358	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	4	3	4	28.368	27.627	2	0.00083844	23518	160511_QHF_FH_JSI12i_3	127.66	30.017			0.82196	0.8429	24.516	13	2	Median	1.216	1.0381	1.9445	2	0	Median	0.71491	0.86366	41.311	4	1	Median	0.7964	0.73369	20.931	3	1	Plateau	0.75431	0.70638	8.7342	4	0	Linear	3396200000	1801900000	1594300000	261510000	119410000	142100000	903370000	433000000	470370000	1122800000	613130000	509650000	1108600000	636400000	472160000	50812	1747	47834	307308;307309;307310;307311;307312;307313;307314;307315;307316;307317;307318;307319;307320	413432;413433;413434;413435;413436;413437;413438;413439;413440;413441;413442;413443;413444	413444			13	
TLGDFAAEYAK	1	Unmodified	1184.5714	0.57135383	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72	4	4	3				1	3		4	4	3	4	57.185	53.571	2	5.9728E-13	48630	160511_QHF_FH_JSI11i_1	145.25	123.78			0.9486	1.0027	14.415	15	2	Median	1.2211	1.0085	11.593	4	0	Median	0.87644	1.0579	23.467	4	2	Median	0.88378	0.91428	2.5399	3	0	Plateau	0.94279	1.0575	6.2262	4	0	Median	4357100000	2129000000	2228100000	821930000	340980000	480950000	1056100000	543400000	512750000	1522300000	767000000	755340000	956670000	477650000	479020000	50813	939	47835	307321;307322;307323;307324;307325;307326;307327;307328;307329;307330;307331;307332;307333;307334;307335	413445;413446;413447;413448;413449;413450;413451;413452;413453;413454;413455;413456;413457;413458;413459;413460;413461;413462;413463;413464;413465;413466;413467;413468;413469	413446			25	
TLGDFAAEYAKSNR	1	Acetyl (K)	1583.758	0.7579854	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		69.179	58.316	2	1.7743E-10	31363	160513_QHF_FH_JSI11Kac_5	119.76	103.87			0.31546	0.3154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31546	0.3154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3799100	2991700	807440	0	0	0	0	0	0	3799100	2991700	807440	0	0	0	50814	939	47836	307336	413470	413470	703		1	
TLGDLIPR	0	Unmodified	883.51272	0.51271674	2149	Q00532	CDKL1	Cyclin-dependent kinase-like 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		39.636	38.883	2	0.0010721	32385	160511_QHF_FH_JSI10i_3	94.407	2.7809			0.91782	0.96518	5.8349	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85892	1.0058	NaN	1	0	Median	0.98077	0.92617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	491830000	227370000	264460000	0	0	0	220200000	91256000	128950000	271620000	136110000	135510000	0	0	0	50815	2149	47837	307337;307338	413471	413471			1	
TLGDLVR	0	Unmodified	772.4443	0.44430282	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	34.914	33.983	2	0.0032859	29582	160511_QHF_FH_JSI9i_2	128.86	54.264			0.5115	0.57249	44.603	3	2	Plateau	1.5008	1.3058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96713	0.95874	NaN	1	1	Median	0.4839	0.54204	NaN	1	0	Median	437590000	232420000	205170000	123480000	53318000	70161000	0	0	0	205020000	116460000	88558000	109090000	62642000	46452000	50816	3860	47838	307339;307340;307341	413472;413473;413474	413473			3	
TLGDLVRK	1	Unmodified	900.53927	0.53926584	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		26.264	24.941	3	0.0086604	21084	160511_QHF_FH_JSI11i_3	43.442	22.817			3.7862	3.7349	28.784	2	2	Median	5.5377	4.5779	NaN	1	1	Median	2.5886	3.0471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44600000	8892200	35708000	28175000	3626100	24549000	16426000	5266100	11160000	0	0	0	0	0	0	50817	3860	47839	307342;307343;307344	413475;413476;413477	413475			3	
TLGDTGFMPPDK	1	Unmodified	1277.5962	0.59618837	4114	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	52.424	51.755	2	1.1889E-10	46044	160511_QHF_FH_JSI9i_1	143.24	129.12			1.0154	0.99875	8.9119	4	0	Median	1.1773	0.96177	NaN	1	0	Median	0.97082	1.1456	NaN	1	0	Median	1.0619	1.0372	NaN	1	0	Median	0.92872	0.94026	NaN	1	0	Median	548360000	240260000	308100000	130020000	56434000	73586000	144880000	67998000	76881000	141910000	53580000	88333000	131550000	62245000	69305000	50818	4114	47840	307345;307346;307347;307348;307349	413478;413479;413480;413481;413482;413483;413484;413485;413486;413487;413488;413489;413490;413491;413492	413490			15	
TLGETSANAETEQNK	1	Unmodified	1591.7326	0.73255851	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	16.553	15.962	2	7.0083E-10	13401	160511_QHF_FH_JSI10i_1	148.78	137.62			0.90645	0.89005	30.959	5	2	Median	0.95723	0.7918	41.084	2	2	Median	0.76046	0.89005	NaN	1	0	Median	0.90645	0.86443	NaN	1	0	Median	1.3032	1.3803	NaN	1	0	Median	199760000	94666000	105100000	77648000	31239000	46409000	40869000	22107000	18762000	38468000	23170000	15298000	42776000	18150000	24626000	50819	2977	47841	307350;307351;307352;307353;307354	413493;413494;413495;413496;413497;413498;413499;413500	413497			8	
TLGFNLESGWGSGR	0	Unmodified	1479.7106	0.71064128	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		76.632	75.923	2	5.3059E-05	63707	160511_QHF_FH_JSI10i_3	75.819	61.914			1.2096	1.0612	18.535	2	1	Median	1.4905	1.2098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98155	0.93083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49039000	26516000	22524000	23661000	10596000	13065000	0	0	0	25379000	15920000	9458700	0	0	0	50820	2540	47842	307355;307356;307357	413501;413502;413503	413502			3	
TLGGLEMELR	0	Unmodified	1117.5801	0.58014438	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	62.629	61.704	2	0.010552	53630	160511_QHF_FH_JSI11i_2	52.49	37.339			2.0981	2.0876	14.751	3	1	Plateau	2.2421	1.887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.0981	2.1318	NaN	1	0	Median	1.4118	1.5893	NaN	1	1	Median	260180000	90028000	170150000	75420000	22400000	53020000	0	0	0	98222000	32126000	66097000	86533000	35503000	51031000	50821	5633	47843	307358;307359;307360	413504;413505;413506	413506			3	
TLGHNLLVSELYNQLK	1	Unmodified	1841.0047	0.0046980325	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	3	2	1	87.94	87.269	2;3	2.0041E-22	71898	160511_QHF_FH_JSI9i_3	138.19	126.92			0.9892	0.98205	11.869	7	1	Median	1.081	0.89263	16.109	2	1	Median	0.85949	0.98488	7.6731	2	0	Median	1.0553	0.98502	0.42728	2	0	Median	0.78045	0.76848	NaN	1	0	Median	1472500000	761290000	711180000	204350000	110040000	94310000	286260000	108990000	177270000	631780000	336080000	295690000	350090000	206180000	143910000	50822	2456	47844	307361;307362;307363;307364;307365;307366;307367;307368;307369	413507;413508;413509;413510;413511;413512;413513;413514;413515;413516;413517;413518;413519;413520;413521	413517			14	
TLGILGLGR	0	Unmodified	898.56	0.56000128	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				76.198	65.691	2	0.0056395	33912	160513_QHF_FH_JSI9Kac_5	64.567	24.921			1.2593	1.0163	NaN	1	0	Median	1.2593	1.0163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5858600	2488000	3370700	5858600	2488000	3370700	0	0	0	0	0	0	0	0	0	50823	309	47845	307370	413522	413522			1	
TLGIRGPEDVAK	1	Unmodified	1254.6932	0.6932003	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	3	2	1	36.434	35.524	2;3	0.0034644	31140	160511_QHF_FH_JSI11i_3	47.915	29.169			1.5758	1.4472	44.045	6	3	Median	1.4015	1.135	NaN	1	1	Median	1.9691	2.3038	36.5	3	0	Median	1.7718	1.6263	NaN	1	1	Median	0.76483	0.7921	NaN	1	1	Median	1266400000	638110000	628270000	187720000	90272000	97448000	546100000	267800000	278300000	348530000	158400000	190140000	184020000	121640000	62380000	50824	1520	47846	307371;307372;307373;307374;307375;307376;307377	413523;413524;413525;413526;413527;413528;413529;413530;413531	413524			9	
TLGLGEEWR	0	Unmodified	1059.5349	0.53490874	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.989	53.024	2	0.027502	46409	160511_QHF_FH_JSI9i_2	40.724	17.984			0.91695	0.89465	9.6555	4	0	Median	1.0652	0.90038	NaN	1	0	Median	0.67839	0.82871	NaN	1	0	Median	1.0327	1.0429	NaN	1	0	Median	0.81416	0.88895	NaN	1	0	Median	310450000	171750000	138700000	52720000	28331000	24389000	85989000	52387000	33602000	113850000	64335000	49518000	57891000	26702000	31189000	50825	430	47847	307378;307379;307380;307381	413532;413533	413533			2	
TLGMAISERPDLR	0	Unmodified	1457.766	0.76604767	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		51.298	50.516	3	0.026379	42189	160511_QHF_FH_JSI10i_3	24.964	12.544			1.1771	1.2248	46.837	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75341	0.87952	NaN	1	0	Median	1.8392	1.7057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	85207000	43521000	41686000	0	0	0	63775000	33703000	30073000	21432000	9818600	11614000	0	0	0	50826	2904	47848	307382;307383	413534	413534			1	
TLGMVYIYDGK	1	Unmodified	1258.6268	0.62676022	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.5	0.5								2	2	2	1	1		75.061	65.596	2	3.3551E-11	35056	160513_QHF_FH_JSI9Kac_6	136.96	103.58			1.0315	1.0537	69.005	3	2	Median	1.0315	0.88967	NaN	1	1	Median	0.90338	1.0537	NaN	1	0	Median	3.2669	3.1705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114910000	41954000	72955000	34201000	22323000	11878000	11999000	7182400	4816800	68709000	12449000	56260000	0	0	0	50827	859	47849	307384;307385;307386;307387	413535;413536;413537;413538	413538			4	
TLGMVYIYDGK	1	Oxidation (M)	1274.6217	0.62167484	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		64.101	53.181	2	0.0077669	28914	160513_QHF_FH_JSI11Kac_5	65.347	46.076			1.652	1.6168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.652	1.6168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7304400	2899200	4405200	0	0	0	0	0	0	7304400	2899200	4405200	0	0	0	50828	859	47849	307388	413539	413539		395	1	
TLGPKPFQLPFRPQDDLLAR	1	Acetyl (K)	2350.2798	0.27975068	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	89.204	81.67	3	0.00091081	43298	160513_QHF_FH_JSI12Kac_6	62.966	47.2			0.35527	0.33214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35527	0.33214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	156780000	153010000	3772100	0	0	0	103230000	103230000	0	53553000	49781000	3772100	0	0	0	50829	3647	47850	307389;307390;307391	413540;413541;413542	413541	2908		3	
TLGPTVGGLLYR	0	Unmodified	1245.7081	0.70812208	3985	Q96BI1	SLC22A18	Solute carrier family 22 member 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		70.341	68.866	2	0.0011004	57682	160511_QHF_FH_JSI10i_3	65.347	26.199			0.99843	0.97793	2.2166	2	0	Median	1.1668	0.96273	NaN	1	0	Median	0.85433	0.99338	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45706000	21503000	24203000	21071000	8632200	12439000	24635000	12871000	11764000	0	0	0	0	0	0	50830	3985	47851	307392;307393;307394	413543;413544;413545;413546	413545			4	
TLGSFEFEGHSLTQFVR	0	Unmodified	1953.9585	0.95847612	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	85.949	85.507	3	0.00010746	71545	160511_QHF_FH_JSI10i_3	64.507	52.987			1.1044	1.0751	15.244	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.82574	0.97702	NaN	1	0	Median	1.1333	1.0751	NaN	1	0	Median	0.75902	0.79764	NaN	1	1	Median	65198000	29843000	35355000	0	0	0	15329000	8811400	6517700	36133000	13095000	23038000	13736000	7936600	5799000	50831	1535	47852	307395;307396;307397	413547;413548;413549	413548			3	
TLGTGSFGR	0	Unmodified	894.45593	0.45593014	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			27.734	26.395	2	0.0025344	21862	160511_QHF_FH_JSI10i_3	64.268	44.422			1.4294	1.3611	5.7693	2	0	Median	1.6423	1.3067	NaN	1	0	Median	1.2441	1.4178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	342000000	144050000	197960000	170200000	64159000	106040000	171800000	79887000	91915000	0	0	0	0	0	0	50832	1215;1121	47853	307398;307399	413550;413551	413550			2	
TLGTMIAGDTSGDYR	0	Unmodified	1556.7141	0.71407167	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	50.711	49.314	2	4.2713E-06	42753	160511_QHF_FH_JSI11i_2	87.363	63.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7785000	0	7785000	0	0	0	0	0	0	0	0	0	7785000	0	7785000	50833	1170	47854	307400;307401;307402	413552;413553;413554	413553			3	
TLGTMIAGDTSGDYRR	0	Unmodified	1712.8152	0.8151827	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							4	4	2	2	41.653	40.633	2;3	4.2743E-22	33988	160511_QHF_FH_JSI10i_3	130.27	106.79			0.93917	1.0216	15.31	12	0	Median	1.4204	1.1967	3.5286	4	0	Median	0.84547	1.0216	10.323	4	0	Median	0.92198	0.89446	4.1129	2	0	Median	0.83358	0.85485	18.572	2	0	Median	1436800000	695490000	741290000	591360000	241900000	349460000	578650000	308580000	270070000	198130000	103170000	94956000	68636000	41840000	26796000	50834	1170	47855	307403;307404;307405;307406;307407;307408;307409;307410;307411;307412;307413;307414	413555;413556;413557;413558;413559;413560;413561;413562;413563;413564;413565;413566;413567;413568;413569;413570;413571;413572;413573;413574	413562			20	
TLGTPDEVVWPGVTSMPDYKPSFPK	2	Unmodified	2747.3517	0.35165457	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	96.355	96.186	3;4	2.2436E-24	83257	160511_QHF_FH_JSI12i_3	148.29	142.67			1.0723	1.0599	8.9803	8	0	Median	1.0723	0.93831	7.1171	2	0	Median	0.81851	1.0135	6.0995	2	0	Median	1.1391	1.1212	5.0937	2	0	Median	1.0449	1.107	5.9204	2	0	Median	751030000	367520000	383510000	120920000	64137000	56785000	130070000	71969000	58100000	226910000	106210000	120700000	273130000	125200000	147920000	50835	1252	47856	307415;307416;307417;307418;307419;307420;307421;307422	413575;413576;413577;413578;413579;413580;413581;413582;413583;413584;413585;413586;413587;413588;413589;413590;413591;413592;413593;413594;413595	413593			21	
TLGTPTQPGSTPR	0	Unmodified	1311.6783	0.67827852	3658	Q8NFH5	NUP35	Nucleoporin NUP53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	27.134	24.109	2	3.4908E-05	20882	160511_QHF_FH_JSI9i_1	116.77	94.125			0.86284	0.91296	7.9258	11	0	Median	1.044	0.87602	8.0032	2	0	Median	0.78181	0.93872	7.8912	3	0	Median	0.91217	0.91296	4.7929	3	0	Median	0.81014	0.85358	11.388	3	0	Plateau	621540000	334510000	287040000	112550000	51151000	61397000	156480000	85851000	70631000	174620000	102720000	71898000	177890000	94786000	83109000	50836	3658	47857	307423;307424;307425;307426;307427;307428;307429;307430;307431;307432;307433	413596;413597;413598;413599;413600;413601;413602;413603;413604;413605;413606;413607;413608;413609;413610;413611;413612;413613;413614	413607			19	
TLGVDFIDVATK	1	Unmodified	1277.6867	0.68671794	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.08	4	6	4				1			3	4	3	5	82.355	80.854	2	5.6494E-53	74195	160511_QHF_FH_JSI10i_1	212.72	150.72			1.0294	0.98991	8.361	12	1	Median	1.1176	0.93626	7.9748	3	0	Median	0.81645	0.97222	7.3124	4	0	Median	1.0615	0.98899	6.7166	3	0	Median	1.0351	1.1272	7.6048	2	1	Median	4005000000	1965100000	2039900000	794130000	341410000	452720000	1144600000	618520000	526100000	1151700000	494820000	656880000	914550000	510320000	404230000	50837	1372	47858	307434;307435;307436;307437;307438;307439;307440;307441;307442;307443;307444;307445;307446;307447;307448	413615;413616;413617;413618;413619;413620;413621;413622;413623;413624;413625;413626;413627;413628;413629;413630;413631;413632;413633;413634;413635;413636;413637;413638;413639;413640;413641;413642;413643;413644;413645;413646;413647;413648;413649;413650;413651;413652;413653;413654;413655;413656	413635			42	
TLGVDLVALATR	0	Unmodified	1227.7187	0.71868677	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	87.222	86.772	2	0.00010358	76367	160511_QHF_FH_JSI11i_2	89.171	61.429			0.88548	1.0072	64.756	6	3	Median	1.212	1.0422	NaN	1	1	Median	0.81991	0.99086	NaN	1	0	Median	0.56575	0.54646	90.155	2	1	Median	0.53202	0.54956	87.983	2	1	Median	393170000	246150000	147020000	43935000	18250000	25685000	50809000	28986000	21823000	131580000	83152000	48431000	166850000	115760000	51086000	50838	1296	47859	307449;307450;307451;307452;307453;307454	413657;413658;413659;413660;413661;413662;413663	413660			7	
TLGVSFVQAESECR	0	Unmodified	1581.7457	0.74570615	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.17	59.17	2	7.1084E-13	52533	160511_QHF_FH_JSI11i_3	122.51	113.32			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50839	450	47860	307455	413664	413664			1	
TLHGQETYTPR	0	Unmodified	1301.6364	0.6364137	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	13.729	13.611	2;3	0.0017438	10565	160511_QHF_FH_JSI12i_3	61.353	42.082			1.1981	1.128	27.049	6	0	Median	NaN	NaN	NaN	0	0	Median	1.404	1.7426	NaN	1	0	Median	1.2334	1.1786	13.557	3	0	Median	0.89791	0.89888	16.496	2	0	Median	342830000	164410000	178410000	0	0	0	21830000	9855500	11975000	133640000	61533000	72108000	187360000	93025000	94332000	50840	4443	47861	307456;307457;307458;307459;307460;307461	413665;413666;413667;413668	413667			3	
TLHKAFK	2	Acetyl (K)	885.50724	0.50723743	840	P05455	SSB	Lupus La protein	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	26.149	17.805	3	0.0042247	10588	160513_QHF_FH_JSI10Kac_6	74.127	48.391			0.29541	0.28294	93.595	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1036	1.3103	NaN	1	0	Median	0.29541	0.28294	NaN	1	0	Median	0.22196	0.24011	NaN	1	0	Median	42844000	28750000	14094000	0	0	0	10804000	3895300	6908600	27447000	21241000	6205700	4593200	3613100	980150	50841	840	47862	307462;307463;307464	413669;413670;413671;413672	413672	493		4	
TLHLPIMGVVMK	1	Unmodified	1337.7563	0.7563346	3422	Q8IWF6	DENND6A	Protein DENND6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	84.959	84.084	3	0.005051	74777	160511_QHF_FH_JSI11i_3	44.299	35.786			1.2522	1.4943	40.245	3	3	Median	1.8597	1.6	NaN	1	1	Median	1.2522	1.4943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70942	0.77204	NaN	1	1	Median	20567000	10698000	9869000	6375500	2402900	3972600	4069900	1613500	2456400	0	0	0	10122000	6681600	3440000	50842	3422	47863	307465;307466;307467;307468;307469	413673;413674;413675;413676;413677	413673			5	
TLHLPVSTTLSDVLDR	0	Unmodified	1765.9574	0.95741349	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			88.72	87.568	3	0.0015979	73392	160511_QHF_FH_JSI10i_3	43.297	23.459			1.1728	1.2202	9.2688	3	1	Plateau	1.4215	1.1947	12.994	2	1	Median	1.0518	1.2202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36001000	14310000	21691000	23007000	9215000	13791000	12995000	5095100	7899600	0	0	0	0	0	0	50843	4936	47864	307470;307471;307472;307473	413678;413679;413680;413681;413682	413680			5	
TLHNLVIQYAAQGR	0	Unmodified	1582.858	0.85797422	4985	Q9NSK0	KLC4	Kinesin light chain 4	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			59.894	51.134	3	0.0045099	28203	160513_QHF_FH_JSI10Kac_6	44.807	37.974			0.75663	0.77406	36.086	2	0	Median	0.69435	0.59973	NaN	1	0	Median	0.82449	0.99906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33690000	19396000	14294000	12803000	8921600	3881200	20887000	10474000	10413000	0	0	0	0	0	0	50844	4985	47865	307474;307475	413683	413683			1	
TLHNLVIQYASQGR	0	Unmodified	1598.8529	0.85288884	2258;4625	Q9H0B6;Q07866	KLC2;KLC1	Kinesin light chain 2;Kinesin light chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									8	4	3		1	59.055	50.137	2;3	5.4667E-05	27635	160513_QHF_FH_JSI10Kac_6	108.66	96.101			1.1879	1.1168	51.806	6	6	Median	1.3108	1.1168	0.62598	2	2	Median	1.0855	1.281	52.981	3	3	Median	NaN	NaN	NaN	0	0	Median	0.422	0.4822	NaN	1	1	Median	415050000	177720000	237330000	103900000	41977000	61928000	308480000	133530000	174950000	0	0	0	2666700	2213400	453330	50845	4625;2258	47866	307476;307477;307478;307479;307480;307481;307482;307483	413684;413685;413686;413687;413688;413689;413690;413691	413691			8	
TLHNMMKK	2	Acetyl (K)	1043.5256	0.52560638	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.957	16.845	3	0.022334	10276	160513_QHF_FH_JSI11Kac_6	44.753	38.44			0.73316	0.71239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73316	0.71239	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5659100	4919600	739500	0	0	0	0	0	0	5659100	4919600	739500	0	0	0	50846	2257	47867	307484	413692	413692	2359		1	
TLHPAVHAGILAR	0	Unmodified	1354.7834	0.78335271	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	11.7	6.13			2						4	2	2	1	1	40.526	33.909	4	5.928E-05	18668	160513_QHF_FH_JSI10Kac_6	85.554	77.45			1.1069	1.0426	10.408	6	0	Median	1.3263	1.1259	12.578	2	0	Median	0.79584	0.95373	3.4737	2	0	Median	1.2139	1.1561	NaN	1	0	Median	1.0092	1.0552	NaN	1	0	Median	216880000	112140000	104740000	85053000	41864000	43189000	115120000	62237000	52885000	9630800	3957900	5672900	7071100	4080100	2990900	50847	1381	47868	307485;307486;307487;307488;307489;307490	413693;413694;413695	413695			3	
TLHPDLGTDK	1	Unmodified	1095.556	0.55603811	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.43	7	10	8				4	8	5	9	12	10	11	24.721	20.669	2;3	8.7274E-11	17933	160511_QHF_FH_JSI9i_2	147.2	111.9			0.98773	1.0243	34.422	42	6	Median	1.2845	1.0786	19.145	9	0	Median	0.84376	0.98484	61.082	12	5	Median	1.056	1.0406	19.264	10	1	Median	0.95585	1.0179	9.2451	11	0	Median	54658000000	25147000000	29511000000	6797500000	3086300000	3711200000	17843000000	8093900000	9749400000	17118000000	8226100000	8891500000	12899000000	5740300000	7159000000	50848	761	47869	307491;307492;307493;307494;307495;307496;307497;307498;307499;307500;307501;307502;307503;307504;307505;307506;307507;307508;307509;307510;307511;307512;307513;307514;307515;307516;307517;307518;307519;307520;307521;307522;307523;307524;307525;307526;307527;307528;307529;307530;307531;307532	413696;413697;413698;413699;413700;413701;413702;413703;413704;413705;413706;413707;413708;413709;413710;413711;413712;413713;413714;413715;413716;413717;413718;413719;413720;413721;413722;413723;413724;413725;413726;413727;413728;413729;413730;413731;413732;413733;413734;413735;413736;413737;413738;413739;413740;413741;413742;413743;413744;413745;413746;413747;413748;413749;413750;413751;413752;413753;413754;413755;413756;413757;413758;413759;413760;413761;413762;413763;413764;413765;413766;413767;413768;413769;413770;413771;413772;413773;413774	413735			79	
TLHPDLGTDKDK	2	Acetyl (K)	1380.6885	0.68850885	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			3	1	2	38.641	28.884	2;3	2.357E-08	16605	160513_QHF_FH_JSI11Kac_5	105.65	69.332			0.8293	0.97696	17.128	6	0	Median	NaN	NaN	NaN	0	0	Median	0.86349	1.0293	5.4229	3	0	Plateau	0.76505	0.75372	NaN	1	0	Median	0.81105	0.88394	27.084	2	0	Median	101750000	51128000	50624000	0	0	0	34859000	17480000	17380000	30050000	12945000	17105000	36842000	20703000	16139000	50849	761	47870	307533;307534;307535;307536;307537;307538	413775;413776;413777;413778;413779;413780;413781;413782;413783	413780	370		9	
TLHQIFEK	1	Unmodified	1014.5498	0.54983053	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		27.721	27.031	2	0.0099662	22530	160511_QHF_FH_JSI10i_3	55.531	30.608			2.4062	2.1061	56.298	2	2	Median	1.7473	1.4145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.3138	3.1359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45423000	12074000	33348000	18384000	6593800	11790000	0	0	0	27039000	5480400	21558000	0	0	0	50850	1779	47871	307539;307540;307541	413784;413785;413786	413785			3	
TLHQYTGSALK	1	Unmodified	1217.6404	0.64043645	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	19.569	19.575	2;3	0.00032027	15843	160511_QHF_FH_JSI12i_3	75.509	28.427			1.2028	1.1605	11.502	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2172	1.1605	2.4055	2	1	Median	1.048	1.0586	17.511	2	0	Median	300290000	139370000	160930000	0	0	0	0	0	0	80206000	36351000	43856000	220090000	103020000	117070000	50851	3430	47872	307542;307543;307544;307545	413787;413788;413789;413790;413791	413791			5	
TLHSCSVR	0	Unmodified	958.46545	0.46544897	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				6.4833	5.9604	3	0.021541	3932	160511_QHF_FH_JSI9i_3	28.727	19.864			1.2481	1.0299	NaN	1	0	Median	1.2481	1.0299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40829000	17036000	23793000	40829000	17036000	23793000	0	0	0	0	0	0	0	0	0	50852	1804	47873	307546	413792	413792			1	
TLHSDDEGTVLDDSR	0	Unmodified	1658.7384	0.73837217	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	4	1	27.446	26.761	2;3	1.0069E-06	23831	160511_QHF_FH_JSI10i_1	130.1	108.11			1.0243	1.0297	20.142	6	2	Median	1.3427	1.1308	NaN	1	0	Median	0.96378	1.1497	28.837	2	1	Median	1.059	1.0426	28.949	2	1	Median	0.86046	0.92514	NaN	1	0	Median	219340000	102720000	116620000	40270000	20724000	19546000	76370000	33916000	42453000	75898000	35377000	40521000	26797000	12701000	14096000	50853	102	47874	307547;307548;307549;307550;307551;307552;307553;307554	413793;413794;413795;413796;413797;413798;413799;413800;413801;413802;413803;413804;413805	413798			13	
TLHSLTQWNGLINK	1	Unmodified	1623.8733	0.87328993	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			66.383	64.885	3	0.014792	54326	160511_QHF_FH_JSI10i_3	41.825	37.024			0.5348	0.61422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5348	0.61422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14456000	11376000	3079500	0	0	0	14456000	11376000	3079500	0	0	0	0	0	0	50854	719	47875	307555	413806	413806			1	
TLHSTFQPNISQGK	1	Unmodified	1556.7947	0.79470526	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	4	5	3	3	36.459	33.613	2;3	6.908E-40	29279	160511_QHF_FH_JSI11i_3	237.37	213.39			0.94994	0.94132	34.094	13	5	Median	1.1322	0.93087	8.7967	4	1	Median	0.80143	0.92147	25.723	4	2	Median	0.68539	0.63897	42.018	3	1	Plateau	1.3889	1.4642	60.612	2	1	Median	1743100000	893420000	849650000	444020000	209830000	234190000	639510000	350340000	289170000	462280000	223750000	238530000	197260000	109490000	87768000	50855	5161	47876	307556;307557;307558;307559;307560;307561;307562;307563;307564;307565;307566;307567;307568;307569;307570	413807;413808;413809;413810;413811;413812;413813;413814;413815;413816;413817;413818;413819;413820;413821;413822;413823;413824;413825;413826;413827;413828;413829;413830;413831;413832;413833	413811			27	
TLHTDILFGLIK	1	Unmodified	1369.7969	0.79693709	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	1	3	3	2	90.415	87.139	3	4.732E-10	42504	160513_QHF_FH_JSI9Kac_6	96.64	69.311			1.0264	1.047	37.948	8	2	Median	1.3069	1.1446	NaN	1	0	Median	0.66775	0.79221	29.718	3	1	Median	1.3173	1.3065	5.3187	2	1	Median	1.2211	1.329	46.348	2	0	Median	306920000	137370000	169550000	77538000	32622000	44916000	95929000	53615000	42314000	86170000	32869000	53301000	47279000	18264000	29016000	50856	398	47877	307571;307572;307573;307574;307575;307576;307577;307578;307579	413834;413835;413836;413837;413838;413839;413840;413841;413842;413843;413844;413845;413846;413847;413848;413849	413845			16	
TLHTTASNWLHLIPQTLSHLK	1	Unmodified	2410.3121	0.31211344	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.563	77.937	5	0.0071251	43365	160513_QHF_FH_JSI10Kac_6	34.658	26.666			0.94422	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94422	1.0863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110390000	44154000	66238000	0	0	0	110390000	44154000	66238000	0	0	0	0	0	0	50857	2517	47878	307580	413850	413850			1	
TLHYECIVLVK	1	Unmodified	1373.7377	0.73770765	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	6.19		3						1	7	3	3	2	3	66.068	59.577	2;3	1.7137E-07	32633	160513_QHF_FH_JSI10Kac_6	114.5	97.023			1.0869	1.1752	21.51	10	3	Median	1.7023	1.4843	25.894	2	1	Median	0.97496	1.1435	15.073	3	1	Median	0.88466	0.86244	2.7536	2	0	Median	1.0869	1.1872	1.9102	3	1	Plateau	982530000	505820000	476710000	90581000	37897000	52683000	359360000	198550000	160800000	295850000	152890000	142960000	236750000	116480000	120260000	50858	5370	47879	307581;307582;307583;307584;307585;307586;307587;307588;307589;307590;307591	413851;413852;413853;413854;413855;413856;413857;413858;413859;413860;413861;413862	413861			11	
TLIAGQK	1	Unmodified	729.43849	0.43848916	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.161	14.31	2	0.038514	11356	160511_QHF_FH_JSI12i_2	48.115	11.14			0.65053	0.71238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65053	0.71238	NaN	1	0	Median	60749000	33720000	27029000	0	0	0	0	0	0	0	0	0	60749000	33720000	27029000	50859	641	47880	307592	413863	413863			1	
TLIDDDNPPVSFVK	1	Unmodified	1558.7879	0.78788854	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.058	71.541	2	2.0588E-07	65312	160511_QHF_FH_JSI12i_1	140.24	117.6			1.3677	1.3065	18.078	4	3	Median	1.3525	1.1089	NaN	1	1	Median	1.3977	1.634	NaN	1	1	Median	1.2115	1.1764	NaN	1	1	Median	1.3831	1.451	NaN	1	0	Median	265100000	126800000	138300000	47475000	24622000	22853000	51842000	19124000	32718000	88563000	45877000	42687000	77217000	37174000	40043000	50860	1971	47881	307593;307594;307595;307596	413864;413865;413866;413867;413868;413869;413870;413871	413868			8	
TLIDLYEQVVLELIELR	0	Unmodified	2058.1613	0.16125825	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.08	96.359	3	1.3323E-07	56948	160513_QHF_FH_JSI10Kac_6	107.75	90.597			1.029	1.1904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.029	1.1904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54494000	23826000	30668000	0	0	0	54494000	23826000	30668000	0	0	0	0	0	0	50861	2801	47882	307597	413872	413872			1	
TLIEAGLPQK	1	Unmodified	1068.6179	0.61791009	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	48.995	48.164	2	2.3114E-05	43321	160511_QHF_FH_JSI10i_1	98.033	94.462			0.84327	0.87124	18.019	8	2	Median	1.0281	0.86586	7.7045	2	0	Median	0.73692	0.89907	12.877	2	0	Median	0.99567	0.99428	23.774	2	1	Median	0.69353	0.7515	26.002	2	1	Median	1139100000	640050000	499060000	240560000	142180000	98380000	287770000	165480000	122290000	325920000	164910000	161010000	284860000	167480000	117380000	50862	326	47883	307598;307599;307600;307601;307602;307603;307604;307605	413873;413874;413875;413876;413877	413875			5	
TLIEELK	1	Unmodified	844.49058	0.49058431	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	no	no	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	43.816	42.871	2	0.005232	36792	160511_QHF_FH_JSI12i_2	102.71	21.417			0.86002	0.85285	19.786	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.72754	0.894	NaN	1	0	Median	0.86002	0.85285	NaN	1	0	Median	0.56449	0.62134	NaN	1	1	Median	470660000	256360000	214300000	0	0	0	132350000	69453000	62899000	210320000	115920000	94397000	127990000	70982000	57005000	50863	1147	47884	307606;307607;307608	413878;413879	413878			2	
TLIEFLLR	0	Unmodified	1003.6066	0.60661712	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	91.505	91.008	2	1.6553E-06	78909	160511_QHF_FH_JSI12i_3	147.34	53.172			0.95434	0.96536	14.739	6	1	Median	1.129	0.9452	9.4548	2	1	Median	0.88713	1.0536	NaN	1	0	Median	0.88521	0.8423	25.353	2	0	Median	0.89501	0.92481	NaN	1	0	Median	291730000	154000000	137720000	60923000	28086000	32837000	54767000	28049000	26719000	77112000	41020000	36092000	98924000	56847000	42077000	50864	1313	47885	307609;307610;307611;307612;307613;307614;307615	413880;413881;413882;413883;413884;413885;413886	413886			7	
TLIENGEK	1	Unmodified	902.47091	0.4709115	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	15.606	15.03	2	0.010391	12252	160511_QHF_FH_JSI9i_1	63.673	17.339			0.69657	0.65515	38.232	4	4	Median	0.79082	0.64951	NaN	1	1	Median	0.7105	0.83841	NaN	1	1	Median	0.6829	0.66083	NaN	1	1	Median	0.30788	0.34337	NaN	1	1	Median	641800000	389910000	251880000	170190000	86210000	83984000	232060000	152830000	79225000	210760000	128890000	81863000	28787000	21974000	6812900	50865	1467	47886	307616;307617;307618;307619	413887;413888;413889;413890	413890			4	
TLIGFLR	0	Unmodified	818.50142	0.50142377	247	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.289	65.917	2	0.051245	36326	160513_QHF_FH_JSI10Kac_6	51.456	13.848			0.77334	0.9242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77334	0.9242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19665000	11099000	8566500	0	0	0	19665000	11099000	8566500	0	0	0	0	0	0	50866	247	47887	307620	413891	413891			1	
TLIGHVPDQR	0	Unmodified	1134.6146	0.61455605	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			27.706	26.618	3	9.0725E-05	22997	160511_QHF_FH_JSI9i_2	63.32	51.607			0.97338	0.97674	16.366	3	0	Median	1.1359	0.97674	NaN	1	0	Median	0.81662	1.0028	23.045	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	173420000	101220000	72196000	38685000	20281000	18404000	134730000	80939000	53791000	0	0	0	0	0	0	50867	2768	47888	307621;307622;307623	413892;413893;413894	413893			3	
TLIGYSAAELNR	0	Unmodified	1306.6881	0.68811492	2245	Q06546	GABPA	GA-binding protein alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.234	54.279	2	9.5302E-05	47888	160511_QHF_FH_JSI10i_2	90.685	53.21			0.99539	1.1764	31.551	4	3	Median	1.6387	1.4099	NaN	1	1	Median	0.96924	1.1777	NaN	1	0	Median	0.67495	0.68066	NaN	1	1	Median	1.0222	1.1751	NaN	1	1	Median	229590000	122790000	106800000	38261000	14092000	24170000	53879000	28045000	25834000	71433000	46027000	25405000	66013000	34625000	31388000	50868	2245	47889	307624;307625;307626;307627	413895;413896;413897;413898;413899	413899			5	
TLIHLFR	0	Unmodified	898.53887	0.53887191	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			61.045	52.645	3	0.0043915	29065	160513_QHF_FH_JSI10Kac_6	65.803	52.028			0.98047	1.1623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98047	1.1623	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23086000	10569000	12517000	0	0	0	23086000	10569000	12517000	0	0	0	0	0	0	50869	5051	47890	307628	413900;413901	413901			2	
TLIINLPGSK	1	Unmodified	1054.6386	0.63864553	4931	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.658	68.36	2	0.056954	59169	160511_QHF_FH_JSI12i_3	46.462	41.565			2.2013	2.3028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2013	2.3028	NaN	1	0	Median	14083000	4820600	9262100	0	0	0	0	0	0	0	0	0	14083000	4820600	9262100	50870	4931	47891	307629	413902	413902			0	
TLILEGLEK	1	Unmodified	1014.5961	0.59611202	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	2	0		3								1	1		1	66.581	65.568	2	0.00816	57753	160511_QHF_FH_JSI9i_2	52.579	32.792			0.80788	0.98953	23.639	3	0	Plateau	0.71822	0.63401	NaN	1	0	Median	0.80788	0.98953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83418	0.90918	NaN	1	0	Median	94015000	50160000	43855000	27947000	13255000	14691000	34973000	19761000	15212000	0	0	0	31095000	17143000	13952000	50871	15	47892	307630;307631;307632	413903	413903			1	
TLILVAK	1	Unmodified	756.51093	0.51092582	1185	P20936	RASA1	Ras GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		57.81	48.088	2	0.041935	26053	160513_QHF_FH_JSI11Kac_6	64.803	31.065			2.2076	2.1697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2076	2.1697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8070600	2638400	5432300	0	0	0	0	0	0	8070600	2638400	5432300	0	0	0	50872	1185	47893	307633	413904	413904			1	
TLIMRPDLELQFK	1	Unmodified	1602.8803	0.88034914	3650	Q8NF64	ZMIZ2	Zinc finger MIZ domain-containing protein 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	81.668	81.442	3	0.00074422	70757	160511_QHF_FH_JSI12i_3	60.628	47.75			1.1257	1.1414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1257	1.1414	NaN	1	0	Median	36604000	18739000	17865000	0	0	0	0	0	0	0	0	0	36604000	18739000	17865000	50873	3650	47894	307634	413905;413906	413905			2	
TLINAEDPPMVVVR	0	Unmodified	1552.8283	0.82831357	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.77	0.697	5	6	2							3	3	5	2	71.967	71.302	2;3	1.861E-52	61615	160511_QHF_FH_JSI12i_2	223.08	195.07			0.93976	0.97485	10.701	11	4	Median	1.1771	0.98802	19.507	3	1	Median	0.74358	0.92458	2.321	3	2	Plateau	1.005	1.0307	13.008	3	0	Median	0.9049	0.99011	2.1966	2	1	Median	1950200000	1011700000	938540000	328670000	157390000	171280000	565950000	326110000	239840000	672470000	332220000	340250000	383150000	195980000	187170000	50874	1600	47895	307635;307636;307637;307638;307639;307640;307641;307642;307643;307644;307645;307646;307647	413907;413908;413909;413910;413911;413912;413913;413914;413915;413916;413917;413918;413919;413920;413921;413922;413923;413924	413912			18	
TLINAEDPPMVVVRK	1	Unmodified	1680.9233	0.92327659	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							4	3	3	2	61.594	60.686	2;3	7.3568E-08	53782	160511_QHF_FH_JSI10i_2	139.6	133.94			1.203	1.1254	13.127	11	2	Median	1.5697	1.2936	14.259	3	2	Median	0.94602	1.1101	3.2678	3	0	Plateau	1.203	1.119	11.535	3	0	Median	1.0766	1.1382	26.291	2	0	Median	1594800000	745490000	849280000	493090000	214160000	278930000	551380000	280410000	270960000	449040000	206420000	242630000	101260000	44509000	56753000	50875	1600	47896	307648;307649;307650;307651;307652;307653;307654;307655;307656;307657;307658;307659	413925;413926;413927;413928;413929;413930;413931;413932;413933;413934;413935;413936;413937;413938;413939;413940;413941;413942;413943	413942			19	
TLINAEDPPMVVVRK	1	Oxidation (M)	1696.9182	0.91819121	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			53.713	52.155	3	0.026095	43248	160511_QHF_FH_JSI10i_3	32.252	13.931			1.01	1.1823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.01	1.1823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43513000	21958000	21555000	0	0	0	43513000	21958000	21555000	0	0	0	0	0	0	50876	1600	47896	307660	413944	413944			1	
TLINELVK	1	Unmodified	928.55933	0.55933258	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.05		4	1				1	2		1	2	2	3	58.525	53.806	2	0.0027003	46114	160511_QHF_FH_JSI12i_2	78.113	13.692			0.93454	1.0279	18.838	8	0	Median	1.2254	1.0436	NaN	1	0	Median	0.92602	1.1098	1.6969	2	0	Median	0.89973	0.89396	15.384	2	0	Median	0.91522	1.0125	28.995	3	0	Median	914520000	437860000	476670000	171050000	69751000	101300000	178670000	88004000	90664000	357690000	176740000	180940000	207120000	103360000	103760000	50877	2517	47897	307661;307662;307663;307664;307665;307666;307667;307668	413945;413946;413947;413948;413949;413950;413951;413952;413953	413946			9	
TLIPHTDGEK	1	Unmodified	1109.5717	0.57168818	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	20.387	20.389	2	0.0026206	16652	160511_QHF_FH_JSI12i_3	61.65	37.495			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50878	2174	47898	307669	413954	413954			1	
TLIQNCGASTIR	0	Unmodified	1332.682	0.68198369	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.62	2	4	3					3		1	3	4	4	36.086	33.076	2	3.0648E-23	28303	160511_QHF_FH_JSI11i_2	180.66	160.14			0.90615	0.94243	21.448	12	2	Median	1.1273	0.96359	NaN	1	0	Median	0.85406	1.0537	25.882	3	0	Median	0.85549	0.84733	8.6824	4	1	Median	1.0198	1.0967	23.803	4	1	Median	2623700000	1389800000	1233800000	255970000	99361000	156610000	473500000	252540000	220960000	1071400000	624280000	447160000	822750000	413650000	409100000	50879	1655	47899	307670;307671;307672;307673;307674;307675;307676;307677;307678;307679;307680;307681	413955;413956;413957;413958;413959;413960;413961;413962;413963;413964;413965;413966;413967;413968;413969;413970;413971	413964			17	
TLISASSDTTVK	1	Unmodified	1221.6452	0.64524705	3682	Q8TAF3	WDR48	WD repeat-containing protein 48	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.453	32.872	2	0.002979	29702	160511_QHF_FH_JSI12i_1	68.069	53.402			0.66621	0.68091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66621	0.68091	NaN	1	1	Median	25941000	15059000	10882000	0	0	0	0	0	0	0	0	0	25941000	15059000	10882000	50880	3682	47900	307682	413972	413972			1	
TLITFAGMIPYR	0	Unmodified	1381.7428	0.74279303	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.77	6.52		3	5						5	3	4	3	3	93.31	89.86	2;3	5.4733E-24	42468	160513_QHF_FH_JSI12Kac_6	165.83	63.222			1.152	1.066	13.519	12	1	Median	1.4014	1.1931	7.6794	3	0	Plateau	0.8213	0.98611	6.9422	3	0	Median	1.2102	1.1576	19.234	3	1	Median	0.99167	1.0705	16.195	3	0	Median	2482100000	1232800000	1249300000	525390000	225820000	299570000	796910000	453770000	343140000	777420000	362200000	415210000	382420000	191040000	191380000	50881	3503	47901	307683;307684;307685;307686;307687;307688;307689;307690;307691;307692;307693;307694;307695	413973;413974;413975;413976;413977;413978;413979;413980;413981;413982;413983;413984;413985;413986;413987;413988;413989;413990;413991;413992;413993	413991			21	
TLITFAGMIPYR	0	Oxidation (M)	1397.7377	0.73770765	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.4	6.41			5					1	4	4	2	2	2	80.994	75.723	2	5.8493E-16	38093	160513_QHF_FH_JSI12Kac_6	142.55	121.77			1.0521	0.93645	37.128	10	8	Median	1.3985	1.1826	40.936	4	4	Median	0.81119	0.93393	68.959	2	2	Median	0.94055	0.9013	2.5132	2	2	Median	1.0195	1.0288	37.288	2	0	Median	364800000	176320000	188480000	75577000	30861000	44717000	39975000	24061000	15914000	132040000	69361000	62677000	117210000	52039000	65172000	50882	3503	47901	307696;307697;307698;307699;307700;307701;307702;307703;307704;307705	413994;413995;413996;413997;413998;413999;414000;414001;414002;414003;414004;414005	414005		2264	12	
TLITFVNK	1	Unmodified	934.54877	0.54876789	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.43		4	3					1	3	2	2	4	3	59.04	54.949	2	6.3718E-11	47075	160511_QHF_FH_JSI12i_3	173.88	134.33			0.95825	0.9625	26.021	11	6	Median	1.2868	1.0846	16.896	2	1	Median	1.0977	1.2955	14.278	2	2	Median	0.91924	0.88538	26.66	4	2	Median	0.72986	0.75475	5.398	3	1	Median	1384300000	884940000	499320000	95150000	40780000	54370000	193610000	109500000	84118000	546090000	366490000	179590000	549420000	368170000	181250000	50883	5028	47902	307706;307707;307708;307709;307710;307711;307712;307713;307714;307715;307716	414006;414007;414008;414009;414010;414011;414012;414013;414014;414015;414016;414017;414018;414019;414020;414021;414022	414021			17	
TLITFVNKHLNK	2	Acetyl (K)	1468.8402	0.84019889	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		71.931	62.512	2;3	7.7887E-10	33896	160513_QHF_FH_JSI11Kac_6	155.15	111.64			0.23289	0.22535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23289	0.22535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76735000	64624000	12111000	0	0	0	0	0	0	76735000	64624000	12111000	0	0	0	50884	5028	47903	307717;307718	414023;414024;414025	414025	3297		3	
TLITVAHTDGNYLGNSWHEILK	1	Unmodified	2481.2652	0.26522283	5718;5719	Q9Y6D5;Q9Y6D6	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	83.254	82.782	4	1.3358E-13	71570	160511_QHF_FH_JSI12i_3	120.23	106.78			0.89083	0.83647	28.809	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1561	1.3609	NaN	1	1	Median	1.0453	0.98198	NaN	1	0	Median	0.7592	0.76624	NaN	1	0	Median	168970000	95845000	73121000	0	0	0	16637000	6857800	9779000	66190000	35526000	30664000	86139000	53461000	32678000	50885	5718;5719	47904	307719;307720;307721	414026;414027;414028	414028			3	
TLIVEPHVIPNRGPYPYNQPK	1	Unmodified	2431.3012	0.3012144	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			62.647	61.134	4	3.9861E-06	51199	160511_QHF_FH_JSI10i_3	69.148	65.12			0.84431	0.82751	8.6951	2	0	Median	1.0681	0.87998	NaN	1	0	Median	0.66742	0.77816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79783000	39525000	40258000	41964000	18607000	23356000	37819000	20917000	16902000	0	0	0	0	0	0	50886	408	47905	307722;307723	414029;414030;414031	414029			3	
TLIVLTNVTK	1	Unmodified	1100.6805	0.68051035	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.26		4	2				2	4	4	3	4	5	4	70.728	64.318	2	0.00033774	56862	160511_QHF_FH_JSI9i_2	77.662	71.915			1.1034	1.1216	13.06	16	0	Median	1.107	0.93957	6.2831	3	0	Plateau	0.98978	1.1668	6.4469	4	0	Median	1.1159	1.0382	15.593	5	0	Median	1.1529	1.2667	8.6615	4	0	Median	555580000	273230000	282350000	93992000	46759000	47234000	124370000	66247000	58126000	195530000	93858000	101670000	141680000	66364000	75318000	50887	3668	47906	307724;307725;307726;307727;307728;307729;307730;307731;307732;307733;307734;307735;307736;307737;307738;307739	414032;414033;414034;414035;414036;414037;414038;414039;414040;414041;414042;414043;414044;414045;414046;414047;414048;414049;414050;414051;414052	414040			17	
TLIVTHSNQALNQLFEK	1	Unmodified	1955.0476	0.04762548	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.307	73.513	3	9.4374E-09	63611	160511_QHF_FH_JSI12i_3	138.05	110.55			1.111	1.1033	11.174	4	0	Median	1.6152	1.3121	NaN	1	0	Median	0.88652	1.0591	NaN	1	0	Median	1.084	1.0192	NaN	1	0	Median	1.1386	1.1494	NaN	1	0	Median	453220000	227080000	226150000	78872000	26676000	52196000	92007000	51716000	40291000	227120000	118880000	108240000	55224000	29800000	25425000	50888	408	47907	307740;307741;307742;307743	414053;414054;414055;414056;414057;414058;414059	414059			7	
TLIVTPGSLVNNWK	1	Unmodified	1540.8613	0.86132826	5700	Q9Y620	RAD54B	DNA repair and recombination protein RAD54B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			89.713	88.632	2	0.0011608	74088	160511_QHF_FH_JSI10i_3	62.303	34.29			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50889	5700	47908	307744	414060	414060			1	
TLKEEMESLK	2	Unmodified	1206.6166	0.61658946	5208	Q9P2B4	CTTNBP2NL	CTTNBP2 N-terminal-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	102.03	101.92	2	0.012564	84530	160511_QHF_FH_JSI10i_3	63.48	19.13			1.0361	1.0679	17.188	3	0	Median	1.0487	0.84058	NaN	1	0	Median	1.0025	1.1732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0361	1.0679	NaN	1	0	Median	997920000	526330000	471590000	216750000	104690000	112060000	278880000	139080000	139790000	0	0	0	502290000	282550000	219740000	50890	5208	47909	307745;307746;307747	414061;414062;414063	414061			3	
TLKMIQPSASGSLVGR	1	Acetyl (K)	1685.9134	0.91344018	536	O75496	GMNN	Geminin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		75.702	65.218	2	7.5922E-05	34733	160513_QHF_FH_JSI11Kac_5	103.75	61.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	858800	858800	0	0	0	0	858800	858800	0	0	0	0	0	0	0	50891	536	47910	307748;307749	414064;414065	414064	274		2	
TLKPEEQR	1	Unmodified	999.53491	0.53490874	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	2	3	7.2016	6.9577	2;3	0.0079679	4699	160511_QHF_FH_JSI11i_3	93.162	52.894			0.91826	0.92236	18.85	9	0	Median	1.0044	0.84636	17.785	2	0	Median	0.70739	0.86988	0.45955	2	0	Median	1.1509	1.0854	6.6654	2	0	Median	1.078	1.0737	28.171	3	0	Plateau	1024600000	548670000	475880000	155090000	83457000	71636000	248570000	142130000	106450000	380500000	183940000	196560000	240390000	139150000	101240000	50892	2636	47911	307750;307751;307752;307753;307754;307755;307756;307757;307758	414066;414067;414068;414069;414070;414071;414072;414073;414074	414067			9	
TLKPGTMMPEAFLQEAQIMK	2	Unmodified	2263.1415	0.14146756	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	97.12	96.933	3	1.2218E-10	83757	160511_QHF_FH_JSI12i_3	125.88	95.457			0.97337	1.0135	22.652	4	1	Median	1.2035	0.99493	NaN	1	0	Median	0.9101	1.0566	NaN	1	0	Median	0.71133	0.65503	NaN	1	1	Median	1.0411	1.0323	NaN	1	0	Median	195350000	102440000	92907000	21153000	8582700	12571000	28282000	13515000	14767000	69273000	38911000	30362000	76643000	41435000	35208000	50893	884	47912	307759;307760;307761;307762	414075;414076;414077;414078;414079;414080;414081;414082;414083	414083			9	
TLKPGTMSPESFLEEAQIMK	2	Unmodified	2236.1119	0.11194157	845	P06241	FYN	Tyrosine-protein kinase Fyn	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	3	2	1	93.762	93.492	3	4.6258E-10	83327	160511_QHF_FH_JSI11i_3	119.38	106.71			0.82754	0.99184	19.648	7	2	Median	1.1989	1.0519	NaN	1	0	Median	0.87764	1.0011	19.634	3	1	Plateau	0.93395	0.88286	33.96	2	1	Median	0.7761	0.79984	NaN	1	0	Median	343260000	189490000	153760000	18205000	9665400	8539400	69027000	39780000	29248000	206010000	112010000	93994000	50016000	28034000	21982000	50894	845	47913	307763;307764;307765;307766;307767;307768;307769	414084;414085;414086;414087;414088;414089;414090;414091;414092;414093;414094;414095;414096	414086			13	
TLKPGTMSVQAFLEEANLMK	2	Unmodified	2207.133	0.13301137	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			101.12	100.95	3	7.1228E-06	83591	160511_QHF_FH_JSI10i_3	80.156	64.735			0.49572	0.57847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49572	0.57847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57535000	36536000	20998000	0	0	0	57535000	36536000	20998000	0	0	0	0	0	0	50895	885	47914	307770	414097	414097			1	
TLLADQGEIR	0	Unmodified	1114.5982	0.59823728	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			2	3	1	3	41.013	38.079	2	0.00024811	34116	160511_QHF_FH_JSI10i_1	91.584	67.791			1.6073	1.4001	65.418	9	2	Median	2.7379	2.2861	78.312	2	0	Median	1.1801	1.4001	82.415	3	1	Median	1.8829	1.8521	NaN	1	0	Median	1.17	1.2949	59.663	3	1	Median	796570000	361150000	435410000	152350000	31517000	120830000	223990000	117830000	106160000	116450000	50409000	66036000	303780000	161390000	142390000	50896	606	47915	307771;307772;307773;307774;307775;307776;307777;307778;307779	414098;414099;414100;414101;414102;414103;414104;414105;414106	414103			7	
TLLAHAIAGELDLPILK	1	Unmodified	1787.0557	0.05567097	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	1	3	101.03	100.99	2;3	7.807E-25	87605	160511_QHF_FH_JSI12i_3	141.86	123.72			0.78447	0.80963	19.919	3	3	Median	NaN	NaN	NaN	0	0	Median	0.92676	1.1016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76955	0.78379	4.5879	2	2	Median	705060000	411260000	293800000	0	0	0	93259000	56422000	36837000	0	0	0	611800000	354840000	256960000	50897	285	47916	307780;307781;307782;307783;307784;307785	414107;414108;414109;414110;414111;414112	414112			6	
TLLAILR	0	Unmodified	798.53272	0.5327239	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	6.71		3	2					1	4	4	3	2	1	71.533	66.482	2	8.8023E-08	36317	160513_QHF_FH_JSI10Kac_6	143.97	19.986			0.59938	0.60033	27.192	10	1	Median	0.71331	0.61208	36.177	4	0	Median	0.52327	0.62506	27.377	3	0	Median	0.51847	0.51774	15.223	2	1	Median	0.64991	0.69092	NaN	1	0	Median	943060000	618230000	324830000	219890000	128050000	91846000	529410000	366370000	163040000	139320000	92370000	46952000	54427000	31438000	22988000	50898	1411	47917	307786;307787;307788;307789;307790;307791;307792;307793;307794;307795	414113;414114;414115;414116;414117;414118;414119;414120;414121;414122;414123;414124;414125;414126	414126			14	
TLLAKNLPYK	2	Acetyl (K)	1201.7071	0.70705945	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.95						2	5	7	5	2	6	6	5	71.855	61.891	2;3	3.9137E-08	33322	160513_QHF_FH_JSI11Kac_6	136.99	124.2			0.88734	0.99237	26.671	15	1	Median	1.1412	0.96761	1.9849	2	0	Median	0.87874	1.0404	6.7312	4	0	Median	0.75888	0.75441	47.314	5	1	Median	0.86775	0.93435	12.332	4	0	Linear	1317800000	734680000	583170000	131490000	56488000	75001000	319640000	167620000	152020000	571560000	353830000	217730000	295150000	156740000	138410000	50899	1154	47918	307796;307797;307798;307799;307800;307801;307802;307803;307804;307805;307806;307807;307808;307809;307810;307811;307812;307813;307814	414127;414128;414129;414130;414131;414132;414133;414134;414135;414136;414137;414138;414139;414140;414141;414142;414143;414144;414145;414146;414147;414148;414149;414150;414151;414152;414153;414154;414155;414156;414157;414158;414159	414130	1018;1022		33	
TLLAQTLAK	1	Unmodified	957.58588	0.58588168	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.889	44.497	2	0.015628	38090	160511_QHF_FH_JSI12i_2	43.982	16.815			0.90447	1.0096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90447	1.0096	NaN	1	0	Median	107770000	60262000	47512000	0	0	0	0	0	0	0	0	0	107770000	60262000	47512000	50900	598	47919	307815	414160	414160			1	
TLLATVDETIPLLPASTHR	0	Unmodified	2047.1314	0.13135511	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		90.965	90.965	3	2.9299E-05	81158	160511_QHF_FH_JSI11i_3	74.543	38.062			2.1526	2.0544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1526	2.0544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81637000	29692000	51945000	0	0	0	0	0	0	81637000	29692000	51945000	0	0	0	50901	2229	47920	307816	414161	414161			1	
TLLDQHGQYPIWMNQR	0	Unmodified	1998.9734	0.97341468	4385	Q9BRT6	LLPH	Protein LLP homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		66.859	66.114	3	0.001551	58875	160511_QHF_FH_JSI11i_3	58.658	47.334			0.29861	0.26357	70.077	2	2	Median	0.52417	0.43262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.17011	0.16058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	263980000	199670000	64309000	70949000	43915000	27034000	0	0	0	193030000	155760000	37276000	0	0	0	50902	4385	47921	307817;307818	414162;414163	414162			2	
TLLDSLR	0	Unmodified	816.47052	0.47051757	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	42.648	41.829	2	0.015369	36913	160511_QHF_FH_JSI10i_2	64.757	25.095			0.81219	0.84189	17.627	5	1	Median	1.0249	0.87157	NaN	1	0	Median	0.70031	0.84189	NaN	1	0	Median	0.81219	0.81837	NaN	1	0	Median	0.87599	0.93139	33.251	2	1	Median	375740000	182630000	193110000	60511000	28381000	32129000	74198000	37604000	36594000	128980000	68001000	60981000	112050000	48647000	63402000	50903	2904	47922	307819;307820;307821;307822;307823	414164;414165;414166;414167;414168	414168			5	
TLLEALEQR	0	Unmodified	1071.5924	0.59242362	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		54.764	54.045	2	0.0041947	46773	160511_QHF_FH_JSI11i_2	67.993	56.224			1.1482	1.2673	22.067	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2138	1.4813	NaN	1	1	Median	1.0861	1.0842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92996000	38812000	54183000	0	0	0	39283000	14157000	25126000	53713000	24655000	29058000	0	0	0	50904	3094	47923	307824;307825	414169;414170	414169			2	
TLLEEEYFR	0	Unmodified	1198.587	0.58700389	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	62.376	61.062	2	0.0089698	52448	160511_QHF_FH_JSI12i_2	52.255	18.002			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50905	1778	47924	307826	414171	414171			1	
TLLEEEYFREK	1	Unmodified	1455.7246	0.72456001	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	1		By MS/MS		By matching	2.5	0.5		1	1								1		1	52.925	52.342	3	0.0052698	46315	160511_QHF_FH_JSI10i_2	42.976	24.64			0.9729	1.0719	26.64	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73131	0.88788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2943	1.2941	NaN	1	0	Median	115580000	57632000	57952000	0	0	0	55205000	29250000	25955000	0	0	0	60379000	28382000	31997000	50906	1778	47925	307827;307828	414172;414173	414173			2	
TLLEFLK	1	Unmodified	862.51641	0.51640513	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	75.113	74.288	2	0.0080209	66009	160511_QHF_FH_JSI10i_2	85.265	31.711			1.1729	1.1448	58.432	8	1	Median	2.7134	2.2961	104.25	2	0	Median	0.82014	1.0025	26.243	2	1	Median	1.1819	1.1325	7.347	2	0	Median	1.3287	1.4015	65.405	2	0	Median	989790000	455280000	534520000	144620000	59917000	84706000	270490000	150540000	119950000	309540000	128730000	180810000	265140000	116090000	149050000	50907	2518	47926	307829;307830;307831;307832;307833;307834;307835;307836	414174;414175;414176;414177;414178;414179;414180;414181;414182;414183;414184;414185	414184			12	
TLLEGEESR	0	Unmodified	1032.5088	0.50875357	810	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	no	no	0	0	0	0	By MS/MS				2	0		1								1				22.085	21.128	2	0.0026004	18023	160511_QHF_FH_JSI9i_2	64.04	48.889		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50908	810	47927	307837	414186	414186			1	
TLLEGSGLESIISIIHSSLAEPR	0	Unmodified	2421.3115	0.31150432	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		3	5						4	3	3	3	3	101.33	98.21	3	3.6381E-126	48750	160513_QHF_FH_JSI12Kac_6	248.7	212.45			1.0003	1.0477	15.29	11	0	Median	1.476	1.2431	5.1988	3	0	Median	1.0023	1.1915	7.9515	3	0	Plateau	0.98079	0.92594	4.1455	2	0	Median	0.90618	0.88414	12.443	3	0	Plateau	8581400000	4130500000	4450900000	2563100000	1047200000	1515800000	2382900000	1204100000	1178900000	2025200000	1039700000	985460000	1610200000	839490000	770710000	50909	1650	47928	307838;307839;307840;307841;307842;307843;307844;307845;307846;307847;307848;307849	414187;414188;414189;414190;414191;414192;414193;414194;414195;414196;414197;414198;414199;414200	414198			14	
TLLEKGLYPK	2	Acetyl (K)	1202.6911	0.69107503	5838				yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							4	4			2	4	2	74.571	63.912	2	0.0051794	34575	160513_QHF_FH_JSI11Kac_4	68.735	37.362	+		0.48851	0.47989	47.697	8	3	Linear	NaN	NaN	NaN	0	0	Median	1.2032	1.3458	48.493	2	2	Median	0.45558	0.44743	29.793	4	0	Linear	0.94189	1.0072	17.81	2	1	Median	24188000	14408000	9780100	0	0	0	2581000	944140	1636900	17669000	11388000	6281200	3937500	2075500	1862000	50910	5838	47929	307850;307851;307852;307853;307854;307855;307856;307857	414201;414202;414203;414204;414205;414206;414207	414203	3577		7	
TLLELLDMK	1	Unmodified	1074.5995	0.59948283	5082	Q9NWZ5	UCKL1	Uridine-cytidine kinase-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.235	89.53	2	0.0092652	78705	160511_QHF_FH_JSI11i_2	51.854	17.047			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50911	5082	47930	307858;307859	414208;414209	414209			2	
TLLENTAITIGR	0	Unmodified	1300.7351	0.73506511	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.829	1	1	2								2	1	1	62.913	62.535	2	1.0976E-10	54015	160511_QHF_FH_JSI12i_3	144.17	107.48			1.0965	1.1599	16.5	4	0	Median	NaN	NaN	NaN	0	0	Median	0.88075	1.0532	8.9439	2	0	Median	1.294	1.1992	NaN	1	0	Median	1.4414	1.4677	NaN	1	0	Median	750430000	360460000	389980000	0	0	0	292620000	163860000	128760000	220270000	93337000	126930000	237540000	103260000	134290000	50912	3914	47931	307860;307861;307862;307863	414210;414211;414212;414213	414213			4	
TLLEQLDDDQ	0	Unmodified	1188.551	0.55101232	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.224	58.575	2	2.546E-09	53211	160511_QHF_FH_JSI12i_1	128.36	126.21			1.1061	1.0212	9.4684	4	1	Median	1.2159	1.0009	NaN	1	1	Median	0.77858	0.92436	NaN	1	0	Median	1.1987	1.1606	NaN	1	0	Median	1.0207	1.0419	NaN	1	0	Median	245060000	114250000	130810000	53310000	23794000	29516000	61158000	31359000	29799000	73895000	30728000	43167000	56697000	28366000	28331000	50913	521	47932	307864;307865;307866;307867	414214;414215;414216;414217	414215			2	
TLLESERER	0	Unmodified	1131.5884	0.58840088	565	O75792	RNASEH2A	Ribonuclease H2 subunit A	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			14.445	13.6	3	0.0024691	10831	160511_QHF_FH_JSI10i_3	51.528	36.377			0.55711	0.61964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55711	0.61964	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39697000	21733000	17964000	0	0	0	39697000	21733000	17964000	0	0	0	0	0	0	50914	565	47933	307868	414218	414218			1	
TLLETLQK	1	Unmodified	944.55425	0.5542472	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.28		4					1	2		1	1	3	2	47.795	42.655	2	0.00084942	37255	160511_QHF_FH_JSI9i_2	119.17	51.193			0.80524	0.8384	26.087	7	2	Median	0.67171	0.5791	NaN	1	1	Median	0.4984	0.61304	NaN	1	1	Median	0.80997	0.8384	18.52	3	0	Median	0.92596	1.0385	17.024	2	0	Median	1445600000	930240000	515400000	264190000	164820000	99372000	450010000	332270000	117740000	430970000	251940000	179040000	300460000	181210000	119250000	50915	5300	47934	307869;307870;307871;307872;307873;307874;307875	414219;414220;414221;414222;414223;414224	414221			6	
TLLETLQKAGFSEK	2	Acetyl (K)	1605.8614	0.86138784	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.177	69.61	2	0.0010162	36949	160513_QHF_FH_JSI11Kac_5	93.766	62.58			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1406500	1406500	0	0	0	0	0	0	0	1406500	1406500	0	0	0	0	50916	5300	47935	307876	414225	414225	3359		1	
TLLFTFNVPGSGNTYPK	1	Unmodified	1854.9516	0.95159983	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.22	6.21		1	5						3	2	2	3	2	93.232	89.619	2;3	1.4879E-83	42383	160513_QHF_FH_JSI12Kac_6	228.8	180.8			0.91071	0.8977	24.754	8	2	Median	1.4167	1.1949	26.04	2	1	Median	0.657	0.77692	6.0345	2	1	Median	0.78084	0.741	2.6832	2	0	Median	1.0595	1.1069	5.2265	2	0	Median	211530000	104650000	106880000	43774000	18304000	25471000	22321000	13053000	9268400	79353000	40610000	38743000	66083000	32685000	33398000	50917	3959	47936	307877;307878;307879;307880;307881;307882;307883;307884;307885	414226;414227;414228;414229;414230;414231;414232;414233;414234;414235;414236;414237;414238;414239;414240;414241	414241			16	
TLLGFFLAK	1	Unmodified	1008.6008	0.60080346	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	91.959	87.596	2	4.2006E-07	45884	160513_QHF_FH_JSI10Kac_6	136.16	101.35			0.97014	0.94656	6.5313	8	0	Median	1.093	0.90499	7.6442	2	0	Median	0.83672	0.96884	4.5842	2	0	Median	0.94283	0.89713	5.3988	2	0	Median	0.97014	1.0076	2.0192	2	0	Median	2354300000	1188000000	1166300000	638130000	289250000	348880000	447610000	221150000	226460000	860140000	472130000	388010000	408440000	205510000	202930000	50918	940	47937	307886;307887;307888;307889;307890;307891;307892;307893	414242;414243;414244;414245;414246;414247;414248;414249;414250;414251;414252;414253;414254;414255;414256;414257;414258;414259;414260	414260			19	
TLLHLGSSAPGK	1	Unmodified	1179.6612	0.66117189	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			36.685	35.228	2	0.00019599	28634	160511_QHF_FH_JSI9i_3	80.763	75.397			0.99257	0.93355	29.549	3	2	Median	1.1503	0.93355	NaN	1	0	Median	0.74081	0.86524	41.326	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62162000	29464000	32698000	26298000	10840000	15458000	35864000	18624000	17240000	0	0	0	0	0	0	50919	2928	47938	307894;307895;307896	414261;414262;414263;414264	414263			4	
TLLIKTVETR	1	Acetyl (K)	1214.7234	0.72343779	913	P08670	VIM	Vimentin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		71.825	61.025	2	0.031521	32684	160513_QHF_FH_JSI11Kac_5	65.347	19.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50920	913	47939	307897	414265	414265			1	
TLLILFK	1	Unmodified	846.55788	0.55787602	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.5		5	4					2	4	5	4	3	3	85.486	81.262	2	0.00064445	42972	160513_QHF_FH_JSI10Kac_6	114.59	48.688			0.98356	1.0449	10.683	14	1	Median	1.1741	0.97321	14.787	4	1	Median	0.92523	1.0866	6.0429	4	0	Median	1.1866	1.1154	10.979	3	0	Plateau	1.0049	1.0605	12.375	3	0	Median	3823300000	1677300000	2145900000	871990000	342130000	529860000	1176400000	592950000	583430000	1023900000	439260000	584610000	751020000	302970000	448060000	50921	2261	47940	307898;307899;307900;307901;307902;307903;307904;307905;307906;307907;307908;307909;307910;307911;307912	414266;414267;414268;414269;414270;414271;414272;414273;414274;414275;414276;414277;414278;414279;414280;414281;414282;414283;414284;414285;414286;414287;414288;414289;414290;414291;414292;414293;414294;414295;414296;414297;414298	414298			33	
TLLILFKPLISFK	2	Unmodified	1531.9742	0.97417317	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									3		2	1		95.101	88.154	3	0.00046809	51216	160513_QHF_FH_JSI10Kac_6	83.633	69.072			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50922	2261	47941	307913;307914;307915	414299;414300;414301	414301			3	
TLLLCGYPNVGK	1	Unmodified	1333.7064	0.70640752	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		67.62	66.857	2	0.0001364	59380	160511_QHF_FH_JSI10i_2	101.11	73.363			0.69933	0.7214	26.109	3	3	Plateau	0.55761	0.4598	NaN	1	1	Median	0.59213	0.72401	NaN	1	1	Median	0.7102	0.7214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	154090000	94288000	59805000	26100000	15055000	11045000	43818000	26093000	17725000	84175000	53140000	31035000	0	0	0	50923	4559	47942	307916;307917;307918;307919	414302;414303;414304;414305	414305			4	
TLLLDGNPFR	0	Unmodified	1144.6241	0.6240581	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	76.415	75.568	2	0.0013014	66313	160511_QHF_FH_JSI11i_2	76.827	66.84			0.71593	0.77416	5.5893	4	0	Median	0.87986	0.77136	NaN	1	0	Median	0.66075	0.81963	NaN	1	0	Median	0.7116	0.71551	NaN	1	0	Median	0.72029	0.77698	NaN	1	0	Median	191170000	108740000	82435000	31325000	17055000	14271000	48125000	29496000	18629000	68898000	35506000	33392000	42824000	26680000	16143000	50924	4803	47943	307920;307921;307922;307923;307924	414306;414307;414308;414309;414310;414311;414312;414313	414311			8	
TLLLGDNQLSQLSPHVGALR	0	Unmodified	2131.175	0.17495126	3069	Q6NSJ5	LRRC8E	Volume-regulated anion channel subunit LRRC8E	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			87.834	86.665	3	1.1291E-05	72473	160511_QHF_FH_JSI10i_3	69.737	63.893			1.1706	1.1531	11.661	2	0	Median	1.4795	1.2522	NaN	1	0	Median	0.92622	1.0619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21751000	10432000	11318000	10387000	4647800	5739100	11364000	5784500	5579300	0	0	0	0	0	0	50925	3069	47944	307925;307926	414314;414315;414316;414317	414314			4	
TLLLLSSVPK	1	Unmodified	1069.6747	0.67469669	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.41		4	3					3	2	4	3	3	2	78.636	74.525	2	0.00017227	67408	160511_QHF_FH_JSI9i_2	82.749	67.974			1.0548	1.1293	21.767	11	1	Median	1.2416	1.078	29.166	4	1	Median	0.95149	1.1547	6.3955	3	0	Plateau	0.85142	0.8301	19.163	2	0	Median	1.121	1.1751	1.585	2	0	Median	212870000	107280000	105590000	61766000	28583000	33183000	40589000	21587000	19002000	60791000	33857000	26934000	49725000	23251000	26474000	50926	806	47945	307927;307928;307929;307930;307931;307932;307933;307934;307935;307936;307937;307938	414318;414319;414320;414321;414322;414323;414324;414325;414326;414327;414328	414323			10	
TLLLMSFTK	1	Unmodified	1052.594	0.59400353	1626	P48553	TRAPPC10	Trafficking protein particle complex subunit 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.727	83.536	2	0.013585	72491	160511_QHF_FH_JSI12i_3	56.258	30.521			1.5414	1.6166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5414	1.6166	NaN	1	1	Median	13910000	6422900	7487000	0	0	0	0	0	0	0	0	0	13910000	6422900	7487000	50927	1626	47946	307939	414329	414329			1	
TLLMDALK	1	Unmodified	903.50994	0.50993955	3351	Q86W50	METTL16	Methyltransferase-like protein 16	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		64.327	63.78	2	0.01741	55562	160511_QHF_FH_JSI11i_2	58.596	33.598			0.098646	0.097816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.098646	0.097816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	211880000	193910000	17970000	0	0	0	0	0	0	211880000	193910000	17970000	0	0	0	50928	3351	47947	307940	414330	414330			1	
TLLMENAERVGNR	0	Oxidation (M)	1517.762	0.76202492	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	1	1		By MS/MS			2	0		1									1			95.272	95.026	2	0.059946	84207	160511_QHF_FH_JSI10i_2	53.683	26.354			0.79381	0.97985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79381	0.97985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28778000	14990000	13788000	0	0	0	28778000	14990000	13788000	0	0	0	0	0	0	50929	5039	47948	307941	414331	414331			0	
TLLPHDPTADVFVTPAEEK	1	Unmodified	2079.0524	0.052436086	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	72.908	72.091	2;3	6.0177E-12	63147	160511_QHF_FH_JSI11i_2	140.28	131.18			1.0624	1.0388	13.454	4	0	Median	1.1205	0.95357	NaN	1	0	Median	0.69081	0.86244	NaN	1	0	Median	1.109	1.1328	NaN	1	0	Median	1.0178	1.1316	NaN	1	0	Median	470140000	231520000	238620000	81310000	37940000	43370000	95146000	59842000	35303000	156990000	69804000	87185000	136690000	63930000	72763000	50930	3723	47949	307942;307943;307944;307945;307946;307947;307948	414332;414333;414334;414335;414336;414337;414338;414339;414340;414341;414342	414339			11	
TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK	3	Unmodified	3523.8603	0.86027221	3723	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	93.168	92.785	4;5	2.3073E-27	82597	160511_QHF_FH_JSI11i_3	116.94	115.28			0.86837	0.83091	30.902	5	1	Median	NaN	NaN	NaN	0	0	Median	1.1641	1.3676	27.691	2	1	Median	0.86254	0.82343	0.89084	2	0	Median	0.83012	0.83091	NaN	1	0	Median	639150000	343950000	295200000	0	0	0	43048000	18979000	24069000	506890000	274970000	231920000	89216000	50008000	39208000	50931	3723	47950	307949;307950;307951;307952;307953	414343;414344;414345;414346;414347;414348;414349;414350;414351	414348			9	
TLLPVFLR	0	Unmodified	957.60114	0.60113781	3329	Q86UT6	NLRX1	NLR family member X1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			86.611	85.412	2	0.012527	71521	160511_QHF_FH_JSI10i_3	59.205	40.475			1.0246	1.0465	0.4973	2	0	Median	1.2123	1.0429	NaN	1	0	Median	0.86595	1.0502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11284000	5426100	5857600	6426500	3057600	3368900	4857200	2368500	2488700	0	0	0	0	0	0	50932	3329	47951	307954;307955	414352	414352			1	
TLLPVPSFEDVSIPEK	1	Unmodified	1769.9451	0.94511747	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	100.33	100.23	2	8.134E-05	88059	160511_QHF_FH_JSI9i_2	87.618	64.382			0.7423	0.75397	18.963	6	1	Median	0.71804	0.61111	NaN	1	0	Median	0.62959	0.72152	1.7628	2	0	Median	0.91783	0.90905	21.993	2	1	Median	0.82109	0.87265	NaN	1	0	Median	120830000	55479000	65350000	21617000	9189700	12427000	36584000	17682000	18902000	38567000	15622000	22945000	24061000	12986000	11076000	50933	5088	47952	307956;307957;307958;307959;307960;307961	414353;414354;414355;414356;414357;414358;414359;414360;414361;414362	414359			10	
TLLPVPSFEDVSIPEKPK	2	Unmodified	1995.0928	0.092844338	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	91.115	90.893	3	6.9834E-08	78881	160511_QHF_FH_JSI12i_3	125.18	121.65			0.95396	0.89661	48.942	4	0	Median	1.1893	1.0459	NaN	1	0	Median	1.2044	1.4539	NaN	1	0	Median	0.48946	0.45978	NaN	1	0	Median	0.76521	0.76866	NaN	1	0	Median	297370000	174960000	122410000	32419000	16248000	16170000	57133000	39666000	17466000	45878000	27467000	18411000	161940000	91582000	70361000	50934	5088	47953	307962;307963;307964;307965	414363;414364;414365;414366;414367;414368	414368			6	
TLLQQNQQLK	1	Unmodified	1212.6826	0.68263561	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.263	29.355	2	1.1357E-05	24706	160511_QHF_FH_JSI11i_2	114.28	78.986			1.3534	1.1906	36.62	3	2	Median	1.3534	1.1906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.011	2.0834	NaN	1	1	Median	0.97296	1.046	NaN	1	0	Median	60400000	24133000	36267000	13082000	5507900	7574500	0	0	0	22828000	5854000	16974000	24490000	12771000	11719000	50935	2269	47954	307966;307967;307968;307969	414369;414370;414371;414372;414373;414374	414373			6	
TLLQQTQEEEPSTQSSQAVAAPLGPLLDEAK	1	Unmodified	3278.6518	0.65179558	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	95.144	94.442	3	0.018793	83765	160511_QHF_FH_JSI9i_1	22.969	17.862			1.3258	1.0616	NaN	1	1	Median	1.3258	1.0616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11962000	2043000	9919100	11962000	2043000	9919100	0	0	0	0	0	0	0	0	0	50936	4792	47955	307970;307971	414375;414376	414376			2	
TLLSDPTYR	0	Unmodified	1064.5502	0.55022446	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.58	4	4					3	5		3	4	5	4	42.838	37.609	2	3.1916E-11	34369	160511_QHF_FH_JSI12i_1	157.86	110.79			1.056	1.0153	20.899	15	3	Median	1.162	0.96623	27.149	3	1	Plateau	0.95603	1.1514	29.493	4	1	Median	1.0933	1.1181	5.5525	4	1	Median	0.95859	0.97397	11.22	4	0	Linear	4838100000	2551100000	2286900000	790840000	354200000	436650000	1475200000	852400000	622790000	1702400000	896150000	806220000	869650000	448400000	421260000	50937	1386	47956	307972;307973;307974;307975;307976;307977;307978;307979;307980;307981;307982;307983;307984;307985;307986;307987	414377;414378;414379;414380;414381;414382;414383;414384;414385;414386;414387;414388;414389;414390;414391;414392;414393;414394;414395;414396;414397;414398;414399	414382			23	
TLLSDPTYRELIEQLR	0	Unmodified	1946.0473	0.047291129	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			90.802	89.749	3	5.2569E-05	74974	160511_QHF_FH_JSI10i_3	82.908	47.249			1.1335	1.2928	12.245	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1335	1.2928	12.245	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70533000	34388000	36145000	0	0	0	70533000	34388000	36145000	0	0	0	0	0	0	50938	1386	47957	307988;307989;307990	414400;414401;414402	414401			3	
TLLSESSSQSSK	1	Unmodified	1252.6147	0.61467521	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	18.11	17.326	2	0.0064716	14430	160511_QHF_FH_JSI9i_1	61.344	41.014			1.5234	1.4229	0.89639	2	1	Median	1.6643	1.4139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3945	1.4319	NaN	1	0	Median	61938000	21013000	40924000	27714000	8265700	19448000	0	0	0	0	0	0	34224000	12747000	21476000	50939	5468	47958	307991;307992	414403;414404	414404			2	
TLLSNLEEAK	1	Unmodified	1116.6027	0.60265396	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.163	47.182	2	1.8301E-07	40484	160511_QHF_FH_JSI11i_2	118.04	108.62			0.89246	1.1921	17.708	4	0	Linear	0.87069	0.74279	NaN	1	0	Median	0.7868	0.96981	NaN	1	0	Median	1.1059	1.1202	NaN	1	0	Median	0.91478	1.0266	NaN	1	0	Median	413050000	184130000	228920000	55388000	25561000	29827000	70748000	36734000	34014000	177030000	62188000	114850000	109880000	59645000	50230000	50940	981	47959	307993;307994;307995;307996	414405;414406;414407;414408	414407			4	
TLLSNLEEAKK	2	Unmodified	1244.6976	0.69761697	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	37.575	37.493	2;3	9.5389E-05	32837	160511_QHF_FH_JSI11i_3	57.567	48.28			0.9004	0.88267	30.118	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77063	0.71335	NaN	1	0	Median	1.052	1.0922	NaN	1	0	Median	201490000	103770000	97725000	0	0	0	0	0	0	86044000	43857000	42187000	115450000	59910000	55538000	50941	981	47960	307997;307998;307999	414409;414410;414411	414409			2	
TLLSVPGYK	1	Unmodified	976.55933	0.55933258	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	6.09	4	3					1	2		2	2	3	3	59.908	56.128	2	4.4117E-06	47938	160511_QHF_FH_JSI12i_2	119.41	100.62			0.99208	0.95334	19.521	10	0	Median	1.0321	0.86129	4.3042	2	0	Median	1.0122	1.1901	34.556	2	0	Median	0.94573	0.96047	6.2665	3	0	Median	0.96476	1.0867	18.69	3	0	Median	1272300000	679760000	592560000	227660000	111750000	115910000	98543000	53179000	45365000	558660000	299580000	259080000	387450000	215260000	172200000	50942	1283	47961	308000;308001;308002;308003;308004;308005;308006;308007;308008;308009	414412;414413;414414;414415;414416;414417;414418;414419;414420;414421	414413			10	
TLLTFFDLAWR	0	Unmodified	1381.7394	0.73942221	955	P0DMW4;P0DMW5;Q96HG1	SMIM10	Small integral membrane protein 10	yes	no	0	0	0	0			By MS/MS		2	0		1										1		96.526	96.255	2	0.00038161	84416	160511_QHF_FH_JSI11i_2	72.643	57.492			0.97116	1.0007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97116	1.0007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40146000	21397000	18749000	0	0	0	0	0	0	40146000	21397000	18749000	0	0	0	50943	955	47962	308010	414422	414422			1	
TLLTGDGGGEATGSPLAQGK	1	Unmodified	1828.9167	0.91667089	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		51.542	50.736	2	2.149E-26	45871	160511_QHF_FH_JSI11i_1	210.34	186.96			1.1613	1.0411	26.419	2	1	Median	1.0347	0.86372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3034	1.255	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43551000	20837000	22714000	23596000	13509000	10087000	0	0	0	19954000	7327400	12627000	0	0	0	50944	3165	47963	308011;308012	414423;414424	414423			2	
TLLTLDEQVLSFQR	0	Unmodified	1661.8988	0.89883598	4074	Q96FS4	SIPA1	Signal-induced proliferation-associated protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	93.678	92.919	2	0.0068471	80186	160511_QHF_FH_JSI12i_2	51.092	34.46			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50945	4074	47964	308013	414425	414425			1	
TLLVADPR	0	Unmodified	883.51272	0.51271674	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.45	5	4	3				4	3	2	5	5	5	6	43.515	38.641	2	2.0121E-05	34177	160511_QHF_FH_JSI9i_2	139.31	67.175			0.93774	1.0358	19.026	21	4	Median	1.2987	1.0587	38.798	5	1	Median	0.84602	1.0282	2.5087	5	0	Linear	1.0759	1.0404	8.4577	5	2	Median	0.92119	0.98104	12.693	6	1	Median	8973700000	4455500000	4518300000	2019000000	942990000	1076000000	2216800000	1089300000	1127600000	2908700000	1506900000	1401800000	1829200000	916260000	912940000	50946	1987	47965	308014;308015;308016;308017;308018;308019;308020;308021;308022;308023;308024;308025;308026;308027;308028;308029;308030;308031;308032;308033;308034	414426;414427;414428;414429;414430;414431;414432;414433;414434;414435;414436;414437;414438;414439;414440;414441;414442;414443;414444;414445;414446;414447;414448;414449;414450;414451;414452;414453;414454;414455;414456;414457;414458;414459;414460;414461;414462;414463;414464;414465;414466;414467;414468;414469;414470;414471;414472	414454			47	
TLLVADPRR	0	Unmodified	1039.6138	0.61382777	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			32.26	30.861	3	0.0014453	25128	160511_QHF_FH_JSI9i_3	55.112	30.336			1.2634	1.2187	8.1574	2	0	Median	1.5889	1.2911	NaN	1	0	Median	1.0046	1.1504	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128350000	52205000	76147000	79056000	28646000	50410000	49296000	23559000	25737000	0	0	0	0	0	0	50947	1987	47966	308035;308036;308037;308038	414473;414474;414475;414476	414474			4	
TLLVNNNR	0	Unmodified	942.52468	0.52467841	937	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.78		4	3					3		3	2	3	2	22.686	19.968	2	0.00052479	16524	160511_QHF_FH_JSI10i_3	105.39	82.768			1.1368	1.0734	14.119	9	0	Median	1.2844	1.0564	1.7687	2	0	Median	0.99726	1.1986	15.611	2	0	Median	0.9747	0.90266	12.045	3	0	Plateau	1.166	1.2818	3.2926	2	0	Median	1095400000	531680000	563700000	359780000	149950000	209840000	407790000	215860000	191920000	264950000	137080000	127880000	62865000	28799000	34065000	50948	937	47967	308039;308040;308041;308042;308043;308044;308045;308046;308047;308048	414477;414478;414479;414480;414481;414482;414483;414484;414485;414486	414480			10	
TLLVSTSAVDNNEAQK	1	Unmodified	1688.8581	0.85809337	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	47.845	47.119	2;3	5.6399E-19	42532	160511_QHF_FH_JSI11i_1	210.93	177.05			0.81799	0.81065	40.693	6	4	Median	1.2239	0.99582	14.656	2	1	Median	0.60524	0.73197	NaN	1	1	Median	1.0081	0.9893	70.985	2	1	Median	0.52858	0.5533	NaN	1	1	Median	539210000	359580000	179630000	131220000	73063000	58154000	80139000	51858000	28281000	180930000	128880000	52043000	146930000	105780000	41153000	50949	2956	47968	308049;308050;308051;308052;308053;308054	414487;414488;414489;414490;414491	414487			5	
TLLVSTSAVDNNEAQKK	2	Unmodified	1816.9531	0.95305639	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	39.63	39.435	3	0.00017935	33544	160511_QHF_FH_JSI12i_3	73.208	63.044			0.83295	0.87009	24.643	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83295	0.87009	24.643	2	2	Median	48681000	19009000	29671000	0	0	0	0	0	0	0	0	0	48681000	19009000	29671000	50950	2956	47969	308055;308056	414492;414493;414494	414492			3	
TLLVYDMNLR	0	Unmodified	1236.6536	0.65364367	3048	Q6I9Y2	THOC7	THO complex subunit 7 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.543	74.688	2	0.00027169	65519	160511_QHF_FH_JSI11i_2	89.247	68.918			1.0884	1.1193	25.932	4	0	Median	1.4065	1.2326	NaN	1	0	Median	0.84223	1.0164	NaN	1	0	Median	1.6109	1.6627	NaN	1	0	Median	0.81765	0.92366	NaN	1	0	Median	231290000	105510000	125780000	35944000	11907000	24036000	53414000	32367000	21048000	93011000	33062000	59949000	48924000	28172000	20752000	50951	3048	47970	308057;308058;308059;308060	414495;414496;414497;414498;414499;414500	414499			6	
TLLWTELFR	0	Unmodified	1177.6495	0.64954457	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.73	6.65		2	4						5	2	3	3	3	97.831	94.444	2	1.6806E-16	88100	160511_QHF_FH_JSI12i_3	205.58	149.57			0.93551	1.0341	12.796	10	1	Median	1.4247	1.1854	10.885	2	0	Median	0.85659	0.99409	8.6292	3	0	Median	0.99504	0.95709	16.527	2	0	Median	1.0914	1.105	12.238	3	1	Plateau	2299100000	1085200000	1213900000	310030000	124900000	185130000	568820000	295950000	272870000	512310000	237500000	274800000	907980000	426880000	481100000	50952	108	47971	308061;308062;308063;308064;308065;308066;308067;308068;308069;308070;308071	414501;414502;414503;414504;414505;414506;414507;414508;414509;414510;414511;414512;414513;414514;414515	414512			15	
TLMAQSIYGGR	0	Unmodified	1195.6019	0.60194245	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	3	3	2	47.796	44.974	2	2.9646E-07	39709	160511_QHF_FH_JSI11i_3	120.27	105.33			0.84555	0.87201	36.738	9	2	Median	1.1658	0.97672	44.199	2	1	Median	0.81613	0.98687	51.484	3	0	Median	0.84555	0.82302	10.859	3	1	Median	1.2131	1.3291	NaN	1	0	Median	720940000	396400000	324550000	180340000	93017000	87321000	170900000	86179000	84726000	309020000	192410000	116610000	60680000	24795000	35885000	50953	2517	47972	308072;308073;308074;308075;308076;308077;308078;308079;308080;308081;308082	414516;414517;414518;414519;414520;414521;414522;414523;414524;414525;414526;414527;414528;414529;414530	414517			15	
TLMAQSIYGGRVDNEFDQR	0	Unmodified	2199.0379	0.037865429	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			62.288	60.96	3	0.00017015	53663	160511_QHF_FH_JSI9i_2	60.528	47.491			1.2702	1.3923	10.026	3	2	Plateau	1.8735	1.5507	11.116	2	2	Median	1.2671	1.3923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98018000	31705000	66313000	68198000	18223000	49975000	29821000	13482000	16339000	0	0	0	0	0	0	50954	2517	47973	308083;308084;308085;308086	414531;414532;414533;414534;414535;414536	414535			6	
TLMEALVASYLIKPEVQVR	1	Unmodified	2159.2024	0.20241156	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	2	1	99.03	96.604	3	1.158E-13	83766	160511_QHF_FH_JSI10i_3	146.1	126.81			0.67359	0.65865	23.691	4	1	Median	0.75002	0.61338	NaN	1	0	Median	0.60494	0.70726	NaN	1	0	Median	0.77251	0.70865	39.1	2	1	Median	NaN	NaN	NaN	0	0	Median	517730000	302200000	215530000	61962000	42282000	19680000	247670000	138470000	109200000	208110000	121450000	86652000	0	0	0	50955	2997	47974	308087;308088;308089;308090;308091	414537;414538;414539;414540	414538			4	
TLMECVSNTAK	1	Unmodified	1252.5792	0.5791581	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	31.644	30.963	2	0.0013463	26205	160511_QHF_FH_JSI11i_2	64.297	53.201			0.83228	0.8247	35.149	3	2	Median	NaN	NaN	NaN	0	0	Median	0.55155	0.62636	NaN	1	1	Median	0.83228	0.8247	NaN	1	0	Median	1.178	1.2586	NaN	1	1	Median	59587000	39017000	20570000	0	0	0	22226000	16636000	5590100	29637000	19642000	9995200	7724000	2739600	4984400	50956	3217	47975	308092;308093;308094	414541;414542;414543	414543			3	
TLMELLNQMDGFDTLHR	0	Oxidation (M)	2048.9659	0.96594604	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			6							1	3	2		85.309	84.568	3	2.3996E-05	68193	160511_QHF_FH_JSI10i_3	74.786	66.185			1.1261	1.2801	22.345	5	2	Median	1.7908	1.49	NaN	1	1	Median	1.1103	1.2968	1.8315	2	0	Median	1.0622	1.0037	27.708	2	1	Median	NaN	NaN	NaN	0	0	Median	107570000	50776000	56795000	13163000	4994600	8168600	45949000	21795000	24154000	48458000	23986000	24472000	0	0	0	50957	2006	47976	308095;308096;308097;308098;308099;308100	414544;414545;414546;414547;414548;414549;414550;414551	414549		1665;1666	8	
TLMELLNQMDGFDTLHR	0	Unmodified	2032.971	0.97103142	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							3	3	2	2	100.3	100.18	2;3	2.9513E-138	89021	160511_QHF_FH_JSI11i_3	242.19	222.14			1.0591	1.0763	17.175	9	1	Median	1.2379	1.0673	31.454	3	1	Median	0.90061	1.1463	9.7017	3	0	Plateau	1.0561	1.0267	7.7905	2	0	Median	1.0985	1.1654	NaN	1	0	Median	1028400000	501890000	526500000	207150000	86493000	120660000	331350000	163630000	167710000	465900000	238480000	227430000	23986000	13286000	10700000	50958	2006	47976	308101;308102;308103;308104;308105;308106;308107;308108;308109;308110	414552;414553;414554;414555;414556;414557;414558;414559;414560;414561;414562;414563;414564;414565;414566;414567	414553			16	
TLMGPTR	0	Unmodified	774.40581	0.40580882	522	O75414	NME6	Nucleoside diphosphate kinase 6	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			18.001	16.925	2	0.022262	13774	160511_QHF_FH_JSI10i_3	50.855	4.8341			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50959	522	47977	308111	414568	414568			1	
TLMMDANQR	0	Unmodified	1078.4899	0.48994916	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	27.833	26.931	2	0.0013529	22509	160511_QHF_FH_JSI11i_2	69.423	65.067			1.0916	1.2088	23.987	4	1	Median	0.96654	0.85	NaN	1	0	Median	1.203	1.4853	NaN	1	1	Median	1.299	1.3041	NaN	1	0	Median	0.99055	1.1204	NaN	1	0	Median	170530000	84124000	86408000	36800000	15447000	21353000	29042000	13794000	15248000	68509000	37031000	31478000	36182000	17852000	18329000	50960	3234	47978	308112;308113;308114;308115	414569;414570;414571;414572	414570			4	
TLMMEQR	0	Unmodified	907.42556	0.42555799	5456;5314;5704	Q9UHW9;Q9UP95;Q9Y666	SLC12A6;SLC12A4;SLC12A7	Solute carrier family 12 member 6;Solute carrier family 12 member 4;Solute carrier family 12 member 7	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.323	23.533	2	0.01549	19551	160511_QHF_FH_JSI11i_2	64.567	10.857			0.70613	0.74013	24.671	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86084	0.88119	NaN	1	0	Median	0.57922	0.62165	NaN	1	0	Median	136260000	77204000	59052000	0	0	0	0	0	0	95996000	51190000	44806000	40259000	26014000	14246000	50961	5314;5456;5704	47979	308116;308117	414573;414574	414574			2	
TLMMFVTVSGSPTEK	1	Unmodified	1626.7997	0.79971556	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4	2	2	3	3	81.242	77.311	2;3	1.4911E-69	39574	160513_QHF_FH_JSI9Kac_6	251.75	219.14			0.74597	0.73441	81.063	9	6	Median	0.42599	0.36422	NaN	1	1	Median	0.3921	0.46296	115.55	2	2	Median	0.74597	0.73441	71.1	3	2	Median	1.1833	1.206	115.29	3	1	Plateau	1281500000	959190000	322330000	61930000	44979000	16951000	657680000	558600000	99081000	326850000	208670000	118180000	235060000	146940000	88119000	50962	2568	47980	308118;308119;308120;308121;308122;308123;308124;308125;308126;308127	414575;414576;414577;414578;414579;414580;414581;414582;414583;414584;414585;414586	414580			11	
TLMMFVTVSGSPTEK	1	Oxidation (M)	1642.7946	0.79463018	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.331								7	1	3	2	2	1	76.623	66.278	2;3	0.00021422	34125	160513_QHF_FH_JSI9Kac_5	90.685	86.798			1.1984	1.1301	31.629	7	3	Median	1.2061	1.0168	10.904	2	0	Median	0.99097	1.1654	58.508	2	1	Median	1.4659	1.4341	33.696	2	2	Median	1.1984	1.3469	NaN	1	0	Median	41294000	14792000	26501000	8007100	3200000	4807000	6975900	3252700	3723200	21915000	6609700	15305000	4396200	1729900	2666300	50963	2568	47980	308128;308129;308130;308131;308132;308133;308134;308135	414587;414588;414589;414590;414591;414592;414593;414594	414587		2010;2011	7	
TLMMFVTVSGSPTEK	1	2 Oxidation (M)	1658.7895	0.7895448	2568	Q14696	MESDC2	LDLR chaperone MESD	yes	yes	0	0	2	0		By MS/MS		By MS/MS	14.5	0.5							1	1			1		1	64.107	53.388	2;3	0.0041373	29113	160513_QHF_FH_JSI10Kac_4	80.763	46.897			1.0781	1.2121	32.472	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3194	1.5249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88093	0.96339	NaN	1	1	Median	2541700	1170000	1371700	0	0	0	1573500	654110	919410	0	0	0	968190	515870	452320	50964	2568	47980	308136;308137	414595;414596	414595		2010;2011	2	
TLMNAVSPLK	1	Unmodified	1072.5951	0.59506616	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	52.262	51.287	2	0.05293	43848	160511_QHF_FH_JSI12i_2	41.399	15.663			1.0284	1.1712	16.17	4	0	Median	0.97611	0.84953	NaN	1	0	Median	0.96262	1.1791	NaN	1	0	Median	1.1852	1.1712	NaN	1	0	Median	1.0835	1.1712	NaN	1	0	Median	152270000	78387000	73881000	32004000	18580000	13424000	33178000	19130000	14048000	54608000	26011000	28597000	32478000	14666000	17812000	50965	2302	47981	308138;308139;308140;308141	414597	414597			1	
TLMNLGGLAVAR	0	Unmodified	1214.6805	0.68052712	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.88	3	5	5					4	1	3	6	5	4	74.095	70.963	2;3	7.7475E-23	62067	160511_QHF_FH_JSI12i_2	176.38	145.15			0.90118	0.90975	17.947	16	3	Median	1.262	1.0151	11.353	3	0	Plateau	0.744	0.89053	22.6	5	2	Median	0.9368	0.92592	16.029	5	1	Median	0.78242	0.83128	3.0412	3	0	Median	11924000000	6053800000	5870600000	2714900000	1163200000	1551700000	3762000000	2006400000	1755500000	2919500000	1483900000	1435600000	2528000000	1400300000	1127700000	50966	1470	47982	308142;308143;308144;308145;308146;308147;308148;308149;308150;308151;308152;308153;308154;308155;308156;308157;308158;308159	414598;414599;414600;414601;414602;414603;414604;414605;414606;414607;414608;414609;414610;414611;414612;414613;414614;414615;414616;414617;414618;414619;414620;414621;414622;414623;414624;414625;414626;414627;414628;414629;414630	414602			33	
TLMNLGGLAVAR	0	Oxidation (M)	1230.6754	0.67544174	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.58			3					4	4	3	3	2	3	62.94	55.325	2	1.7442E-22	45422	160511_QHF_FH_JSI9i_3	172.88	151.37			1.0193	1.0561	16.536	10	2	Median	1.2946	1.0699	4.5189	3	0	Plateau	0.88806	1.0424	20.083	3	1	Median	0.95689	0.93073	23.952	2	0	Median	0.94494	1.0343	28.219	2	1	Median	781100000	384560000	396540000	319750000	132520000	187240000	414240000	230050000	184190000	26743000	14061000	12682000	20363000	7933700	12429000	50967	1470	47982	308160;308161;308162;308163;308164;308165;308166;308167;308168;308169;308170	414631;414632;414633;414634;414635;414636;414637;414638;414639;414640	414635		1142	9	
TLMSHYEEAMGLSGR	0	Unmodified	1680.76	0.75997601	3617	Q8NCF5	NFATC2IP	NFATC2-interacting protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.13	50.895	3	0.046818	43564	160511_QHF_FH_JSI12i_3	23.991	19.89			1.98	2.0519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.98	2.0519	NaN	1	1	Median	24276000	10634000	13642000	0	0	0	0	0	0	0	0	0	24276000	10634000	13642000	50968	3617	47983	308171	414641	414641			1	
TLMSSGQMAPSSSNK	1	Unmodified	1524.6912	0.69122774	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0.707	1	2	1							1	1		2	28.869	28.19	2	2.0473E-16	23667	160511_QHF_FH_JSI12i_2	118.48	95.604			3.4474	3.5293	148.69	2	2	Median	1.4068	1.2333	NaN	1	1	Median	8.4481	10.1	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	322480000	45447000	277040000	27405000	15006000	12399000	295080000	30441000	264640000	0	0	0	0	0	0	50969	2997	47984	308172;308173;308174;308175	414642;414643;414644;414645	414642			4	
TLMVDPSQEVQENYNFLLQLQEELLK	1	Unmodified	3120.5689	0.56891757	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.45	103.35	3	7.2173E-10	91120	160511_QHF_FH_JSI11i_2	75.529	70.833			0.53259	0.5282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53259	0.5282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56287000	34110000	22176000	0	0	0	0	0	0	56287000	34110000	22176000	0	0	0	50970	5658	47985	308176	414646	414646			1	
TLNAETPK	1	Unmodified	872.46035	0.46034682	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	13.252	12.992	2	0.056586	10627	160511_QHF_FH_JSI11i_1	41.575	10.184			0.81261	0.85581	34.896	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52457	0.61775	NaN	1	0	Median	1.273	1.2408	NaN	1	0	Median	0.81261	0.85581	NaN	1	0	Median	535780000	278360000	257420000	0	0	0	89432000	59080000	30352000	220270000	96782000	123480000	226080000	122500000	103580000	50971	3223	47986	308177;308178;308179	414647	414647			1	
TLNAGAYSK	1	Unmodified	923.47125	0.47124585	1719	P50897	PPT1	Palmitoyl-protein thioesterase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.287	17.252	2	0.039079	14076	160511_QHF_FH_JSI12i_2	46.406	8.1683			2.5105	2.788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5105	2.788	NaN	1	1	Median	84445000	22426000	62019000	0	0	0	0	0	0	0	0	0	84445000	22426000	62019000	50972	1719	47987	308180	414648	414648			1	
TLNAHEHFVTSLDFHK	1	Unmodified	1894.9326	0.93259572	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	50.007	49.771	3;4	0.0081048	42566	160511_QHF_FH_JSI12i_3	38.777	27.923			3.0499	3.0594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0499	3.0594	NaN	1	0	Median	52751000	17603000	35148000	0	0	0	0	0	0	0	0	0	52751000	17603000	35148000	50973	1553	47988	308181;308182	414649;414650	414649			2	
TLNASDVLSAMEEMEFQR	0	Unmodified	2069.9398	0.93979087	4952	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	101.71	101.64	3	6.7133E-17	90180	160511_QHF_FH_JSI10i_2	161.91	152.38			0.97934	1.0202	12.364	4	0	Median	1.081	0.9344	NaN	1	0	Median	0.86362	1.0558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0343	1.1066	16.346	2	0	Median	670270000	347980000	322290000	187910000	92821000	95091000	191810000	108210000	83599000	0	0	0	290550000	146950000	143600000	50974	4952	47989	308183;308184;308185;308186;308187	414651;414652;414653;414654	414653			4	
TLNDELEIIEGMK	1	Unmodified	1503.7491	0.7490602	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.68	0.733	12	9	4							8	6	5	6	83.295	82.704	2;3	6.9173E-155	75143	160511_QHF_FH_JSI10i_1	296.52	274.43			1.0537	1.0767	19.066	22	8	Median	1.2249	0.98665	14.389	6	3	Median	0.9087	1.0884	17.362	6	1	Median	1.0805	1.0588	18.356	5	1	Median	1.0341	1.1224	17.388	5	3	Plateau	20694000000	10187000000	10507000000	6583200000	3018000000	3565200000	5309000000	2907300000	2401700000	4536100000	2245000000	2291100000	4266200000	2017000000	2249200000	50975	980	47990	308188;308189;308190;308191;308192;308193;308194;308195;308196;308197;308198;308199;308200;308201;308202;308203;308204;308205;308206;308207;308208;308209;308210;308211;308212	414655;414656;414657;414658;414659;414660;414661;414662;414663;414664;414665;414666;414667;414668;414669;414670;414671;414672;414673;414674;414675;414676;414677;414678;414679;414680;414681;414682;414683;414684;414685;414686;414687;414688;414689;414690;414691;414692;414693;414694;414695;414696;414697;414698;414699;414700;414701;414702;414703;414704;414705;414706;414707;414708;414709;414710;414711;414712;414713;414714;414715;414716;414717;414718;414719	414684			65	
TLNDELEIIEGMK	1	Oxidation (M)	1519.744	0.74397482	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.35	0.477	13	7								4	6	4	6	69.15	68.46	2;3	3.0796E-10	62344	160511_QHF_FH_JSI11i_1	149.23	123.79			0.89244	0.92478	34.302	17	8	Median	1.1032	0.91579	37.517	3	1	Median	0.88928	1.0563	26.951	5	3	Linear	0.8476	0.82112	38.624	3	1	Median	0.98524	1.0301	43.463	6	3	Median	1051100000	564130000	486990000	133290000	68237000	65053000	366590000	204560000	162040000	163870000	87405000	76464000	387360000	203930000	183430000	50976	980	47990	308213;308214;308215;308216;308217;308218;308219;308220;308221;308222;308223;308224;308225;308226;308227;308228;308229;308230;308231;308232	414720;414721;414722;414723;414724;414725;414726;414727;414728;414729;414730;414731;414732;414733;414734;414735;414736;414737;414738;414739;414740;414741;414742;414743;414744;414745;414746;414747;414748	414722		555	29	
TLNETELTELQSQISDTSVVLSMDNSR	0	Unmodified	3009.4448	0.44483927	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0		By MS/MS			1	0	1										1			101.31	101.28	3	2.8993E-59	91992	160511_QHF_FH_JSI10i_1	209.2	198.09		+	0.7173	0.86945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7173	0.86945	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	272960000	157930000	115030000	0	0	0	272960000	157930000	115030000	0	0	0	0	0	0	50977	53;71	47991	308233	414749	414749			1	
TLNEWDSR	0	Unmodified	1019.4672	0.46722311	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	3	1	1	26.696	25.921	2	0.0010392	21622	160511_QHF_FH_JSI12i_2	94.85	68.956			0.84791	1.0007	29.416	5	1	Median	1.3349	1.1483	NaN	1	0	Median	0.69277	0.831	26.285	2	1	Median	0.72682	0.74333	NaN	1	0	Median	1.2514	1.3917	NaN	1	0	Median	836390000	428170000	408220000	136150000	59839000	76308000	270830000	160980000	109850000	285380000	147980000	137400000	144030000	59367000	84660000	50978	282	47992	308234;308235;308236;308237;308238;308239	414750;414751;414752;414753;414754;414755;414756	414751			7	
TLNEWSSQINPDLVR	0	Unmodified	1770.8901	0.89006221	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	72.548	71.731	2	1.2074E-98	62890	160511_QHF_FH_JSI11i_2	315.59	248.99			0.90033	1.0039	85.797	5	1	Median	1.3886	1.1922	NaN	1	0	Median	0.85594	1.0606	NaN	1	0	Median	0.91921	0.9152	NaN	1	0	Median	0.36409	0.39354	132.43	2	1	Median	372140000	206480000	165650000	59420000	26197000	33222000	80712000	40965000	39748000	100090000	51217000	48869000	131920000	88103000	43815000	50979	1623	47993	308240;308241;308242;308243;308244;308245	414757;414758;414759;414760;414761;414762;414763;414764;414765;414766;414767	414764			11	
TLNGGSDAQDGNQPQHNGESNEDSK	1	Unmodified	2598.0815	0.081457396	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	10.238	9.8571	3	1.3407E-16	7666	160511_QHF_FH_JSI12i_1	117.43	117.01			1.0009	0.99989	11.452	4	0	Median	1.3843	1.1266	NaN	1	0	Median	0.71707	0.86626	NaN	1	0	Median	0.97512	0.95267	NaN	1	0	Median	1.0273	1.0495	NaN	1	0	Median	258340000	136090000	122250000	55672000	18705000	36966000	81326000	55333000	25993000	54931000	28412000	26519000	66406000	33636000	32771000	50980	532	47994	308246;308247;308248;308249;308250	414768;414769;414770;414771;414772;414773;414774;414775	414771			8	
TLNHQYDYTFDWTMLK	1	Unmodified	2074.9459	0.94586252	1633	P48729;Q8N752	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	1	2	2	2	84.734	80.866	3	6.7945E-17	39356	160513_QHF_FH_JSI12Kac_6	139.04	130.86			1.0454	1.108	17.994	7	0	Median	1.0454	0.89511	NaN	1	0	Median	0.9004	1.0731	4.521	2	0	Median	1.3343	1.3198	28.386	2	0	Median	1.0796	1.1848	0.26294	2	0	Median	366400000	165990000	200410000	20604000	10072000	10532000	142970000	64800000	78169000	100410000	45768000	54641000	102420000	45350000	57066000	50981	1633	47995	308251;308252;308253;308254;308255;308256;308257	414776;414777;414778;414779;414780;414781;414782;414783;414784;414785;414786;414787;414788;414789;414790;414791	414788			16	
TLNIFLTK	1	Unmodified	948.56442	0.56441796	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.269	66.269	2	0.031505	58996	160511_QHF_FH_JSI11i_3	49.715	23.821			2.1486	1.9416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1486	1.9416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33484000	11824000	21659000	0	0	0	0	0	0	33484000	11824000	21659000	0	0	0	50982	3716	47996	308258	414792	414792			1	
TLNIPVLTVIEWSQVHFLR	0	Unmodified	2264.2681	0.26812336	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.59	90.163	3	4.499E-139	49067	160513_QHF_FH_JSI12Kac_6	267.39	246.74			1.1103	1.0544	12.189	4	0	Median	1.1472	0.97469	NaN	1	0	Median	0.83016	0.98679	NaN	1	0	Median	1.3165	1.2615	NaN	1	0	Median	1.0745	1.1266	NaN	1	0	Median	4660400000	2354100000	2306300000	1356600000	627460000	729150000	1746200000	992040000	754160000	601050000	254880000	346180000	956510000	479740000	476770000	50983	2489	47997	308259;308260;308261;308262	414793;414794;414795;414796;414797	414796			5	
TLNISGNEIQR	0	Unmodified	1243.6521	0.65206377	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		38.832	38.38	2	0.0021126	32873	160511_QHF_FH_JSI11i_2	63.283	34.196			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50984	3150	47998	308263;308264	414798;414799	414799			2	
TLNMTTSPEEK	1	Unmodified	1249.586	0.58601761	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.93	5	1				3	1			2	3	3	2	31.75	27.398	2	5.8563E-06	24222	160511_QHF_FH_JSI10i_1	110.53	63.54			0.8711	0.9383	32.406	9	3	Median	1.234	0.99429	78.401	2	2	Median	0.86201	1.009	34.895	2	1	Median	0.8711	0.86097	16.134	3	0	Median	0.90939	0.96639	4.1724	2	0	Median	1986900000	1068300000	918700000	537000000	247280000	289720000	397460000	236830000	160630000	532790000	302090000	230700000	519700000	282050000	237650000	50985	1693	47999	308265;308266;308267;308268;308269;308270;308271;308272;308273;308274	414800;414801;414802;414803;414804;414805;414806;414807;414808;414809;414810;414811;414812;414813;414814	414806			15	
TLNMTTSPEEK	1	Oxidation (M)	1265.5809	0.58093224	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5	5.66	2					1					1	1	1	15.444	12.981	2	0.0015605	11065	160511_QHF_FH_JSI10i_1	66.595	48.731			0.95245	1.0536	20.532	3	1	Median	NaN	NaN	NaN	0	0	Median	0.95348	1.0752	NaN	1	0	Median	0.77694	0.74612	NaN	1	1	Median	0.95245	1.0536	NaN	1	0	Median	66182000	36017000	30165000	0	0	0	34379000	20101000	14278000	29546000	14851000	14696000	2256600	1065100	1191500	50986	1693	47999	308275;308276;308277	414815;414816;414817	414816		1372	3	
TLNNDLGPNWR	0	Unmodified	1298.6367	0.63674805	3677	Q8NI60	ADCK3	Atypical kinase ADCK3, mitochondrial	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			47.649	46.686	2	0.0065964	41095	160511_QHF_FH_JSI10i_2	61.78	29.845			0.62617	0.73882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62617	0.73882	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17403000	12412000	4991200	0	0	0	17403000	12412000	4991200	0	0	0	0	0	0	50987	3677	48000	308278	414818	414818			1	
TLNNKFASFIDK	2	Acetyl (K)	1438.7456	0.7456298	51;71;53;83;79;57;45;54;78;63;52;80	CON__P05787;P05787;CON__Q9H552;CON__P08729;CON__Q3KNV1;P08729;CON__O95678;O95678;CON__P07744;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__Q9DCV7;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT7;KRT75;KRT3;KRT76;KRT5;KRT79;KRT84;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 epidermal	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3	1	1	2	2	81.856	72.066	2	1.2171E-31	38110	160513_QHF_FH_JSI11Kac_5	188.29	151.86		+	0.54073	0.51243	27.919	6	2	Median	0.64271	0.55117	NaN	1	1	Median	0.38147	0.45554	NaN	1	1	Median	0.47303	0.45995	4.9722	2	0	Median	0.70826	0.75819	28.867	2	0	Median	438450000	276540000	161900000	51516000	28872000	22644000	8418200	7934800	483400	303440000	200630000	102820000	75070000	39111000	35959000	50988	51;53;71;45;52;54;57;78;79;80;83;63	48001	308279;308280;308281;308282;308283;308284	414819;414820;414821;414822;414823;414824;414825;414826;414827;414828	414823	14;15;33		10	
TLNPQMLQK	1	Unmodified	1071.5747	0.57466507	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	40.849	39.935	2	0.0098729	34104	160511_QHF_FH_JSI12i_2	50.607	34.945			0.80433	0.82444	1.5012	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85145	0.83324	NaN	1	0	Median	0.75981	0.81574	NaN	1	0	Median	82177000	42356000	39820000	0	0	0	0	0	0	41946000	18988000	22958000	40230000	23368000	16862000	50989	5051	48002	308285;308286	414829	414829			1	
TLNQLGTPQDSPELR	0	Unmodified	1667.8479	0.84786304	288	O15400	STX7	Syntaxin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	48.945	48.404	2	1.1489E-29	43790	160511_QHF_FH_JSI11i_1	186.58	149.24			1.0243	1.0236	30.315	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85263	0.82614	NaN	1	0	Median	1.2306	1.2684	NaN	1	1	Median	159270000	77218000	82054000	0	0	0	0	0	0	78794000	41134000	37660000	80477000	36084000	44393000	50990	288	48003	308287;308288;308289	414830;414831;414832;414833	414831			4	
TLNQQLTNHIR	0	Unmodified	1336.7211	0.72114638	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2.4	0.49		3	2							2	2	1		27.931	26.928	3	2.3238E-06	23553	160511_QHF_FH_JSI10i_2	90.697	78.342			1.1967	1.1533	64.624	5	1	Median	2.5055	2.1308	101.82	2	1	Median	1.066	1.2705	13.688	2	0	Median	0.86504	0.85107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	518330000	217400000	300940000	207250000	58120000	149130000	245870000	118840000	127020000	65221000	40434000	24787000	0	0	0	50991	1711	48004	308290;308291;308292;308293;308294	414834;414835;414836;414837	414837			4	
TLNSNDPVQNVVQVLEK	1	Unmodified	1895.9953	0.99525556	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	92.421	91.6	2	0.0018903	80620	160511_QHF_FH_JSI11i_2	58.172	44.744			0.13706	0.14249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13706	0.14249	NaN	1	1	Median	5354600	5098300	256340	0	0	0	0	0	0	0	0	0	5354600	5098300	256340	50992	4659	48005	308295;308296	414838;414839	414839			2	
TLPAAPASTNTTATPSLTHMVPAK	1	Unmodified	2377.2311	0.23114551	3474	Q8IZ21	PHACTR4	Phosphatase and actin regulator 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.6	0.49		2	3							2		1	2	65.555	65.069	3	7.949E-13	57894	160511_QHF_FH_JSI11i_3	100.64	82.343			0.88304	0.84351	18.932	5	4	Median	1.0387	0.90283	29.239	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88304	0.84351	NaN	1	0	Median	0.91714	0.95963	21.539	2	2	Median	254330000	119810000	134520000	37351000	19844000	17507000	0	0	0	82565000	39643000	42922000	134420000	60328000	74090000	50993	3474	48006	308297;308298;308299;308300;308301	414840;414841;414842;414843;414844;414845;414846;414847	414840			8	
TLPADVQNYYSR	0	Unmodified	1425.6888	0.6888432	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	53.844	52.865	2	0.023345	46321	160511_QHF_FH_JSI9i_2	48.981	31.161			0.6512	0.64447	14.865	3	3	Plateau	0.72052	0.62084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63973	0.64447	NaN	1	1	Median	0.76238	0.81662	NaN	1	1	Median	158790000	89539000	69250000	44918000	21649000	23269000	0	0	0	71899000	43507000	28393000	41972000	24383000	17589000	50994	4290	48007	308302;308303;308304	414848;414849;414850	414849			3	
TLPAHSDPVSAVHFNR	0	Unmodified	1746.8802	0.88016622	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			5							2		1	2	45.761	45.022	3;4	9.1246E-11	39680	160511_QHF_FH_JSI11i_3	127.66	116.72			0.95041	0.9215	35.917	5	0	Median	1.7209	1.4183	3.6708	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95041	0.87901	NaN	1	0	Median	0.73785	0.74868	29.371	2	0	Median	489940000	240760000	249190000	120340000	46999000	73340000	0	0	0	87548000	46887000	40661000	282050000	146870000	135180000	50995	1971	48008	308305;308306;308307;308308;308309	414851;414852;414853;414854;414855	414852			3	
TLPDEVLTK	1	Unmodified	1014.5597	0.55972651	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	51.362	50.618	2	0.00015459	45944	160511_QHF_FH_JSI11i_1	88.948	35.781			1.1452	1.2285	11.906	7	0	Linear	1.2644	1.0497	0.0096684	2	0	Median	0.81389	0.98946	8.8491	2	0	Median	1.1597	1.1672	18.195	2	0	Median	1.1452	1.2228	NaN	1	0	Median	1144600000	557270000	587310000	281160000	137550000	143610000	274210000	150140000	124070000	330590000	126470000	204120000	258630000	143110000	115520000	50996	4575	48009	308310;308311;308312;308313;308314;308315;308316	414856;414857;414858;414859;414860;414861;414862;414863;414864;414865;414866	414858			11	
TLPETLDPAEYNISPETR	0	Unmodified	2044.9953	0.99531514	650	O95168	NDUFB4	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	78.425	77.871	2	2.818E-11	70950	160511_QHF_FH_JSI11i_1	143.05	128.87			1.2937	1.2282	10.757	5	3	Median	1.3797	1.1451	9.9034	2	2	Median	1.1174	1.3342	NaN	1	1	Median	1.2937	1.2102	NaN	1	0	Median	1.3647	1.4179	NaN	1	0	Median	291080000	124410000	166680000	114990000	54708000	60283000	64007000	29682000	34325000	70248000	25346000	44902000	41836000	14671000	27166000	50997	650	48010	308317;308318;308319;308320;308321	414867;414868;414869;414870;414871;414872;414873;414874	414868			8	
TLPFQLSSVEK	1	Unmodified	1247.6762	0.67615325	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	73.713	72.927	2	0.0015955	63105	160511_QHF_FH_JSI12i_3	67.113	38.026			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50998	5753	48011	308322;308323;308324;308325	414875;414876;414877;414878	414878			4	
TLPGGQPPPR	0	Unmodified	1018.556	0.55597854	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	23.797	23	2	0.0015414	19215	160511_QHF_FH_JSI12i_2	65.252	35.067			0.81301	0.89601	39.124	5	1	Median	0.81301	0.71261	NaN	1	0	Median	0.72572	0.89601	NaN	1	0	Median	1.1125	1.114	NaN	1	0	Median	0.59999	0.63421	61.012	2	1	Median	205000000	124810000	80187000	30405000	15374000	15030000	29032000	17746000	11286000	53169000	28819000	24350000	92395000	62874000	29521000	50999	430	48012	308326;308327;308328;308329;308330	414879;414880;414881;414882;414883;414884	414879			6	
TLPGPLALTSLEHK	1	Unmodified	1475.8348	0.83477916	5195	Q9P1Y5	CAMSAP3	Calmodulin-regulated spectrin-associated protein 3	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	76.989	76.43	3	7.8442E-05	66247	160511_QHF_FH_JSI12i_3	79.614	65.605			1.2136	1.348	18.579	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2136	1.348	NaN	1	0	Median	1.0981	0.99078	NaN	1	0	Median	1.3472	1.3838	NaN	1	0	Median	133400000	64687000	68712000	0	0	0	20372000	9709800	10662000	47524000	25894000	21631000	65503000	29084000	36419000	51000	5195	48013	308331;308332;308333	414885;414886	414886			2	
TLPGSDWTPNAQFITR	0	Unmodified	1802.8951	0.89514758	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								3	1	1	80.089	79.36	2	9.3498E-52	69018	160511_QHF_FH_JSI12i_3	214.81	189.38			1.1372	1.2476	15.443	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2015	1.5073	11.048	3	2	Median	1.1372	1.0907	NaN	1	0	Median	1.1105	1.1354	NaN	1	0	Median	995640000	472860000	522780000	0	0	0	384660000	183790000	200870000	311890000	140810000	171080000	299090000	148260000	150830000	51001	1872	48014	308334;308335;308336;308337;308338	414887;414888;414889;414890;414891;414892;414893;414894;414895	414895			9	
TLPGWNTDISNAR	0	Unmodified	1443.7106	0.71064128	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	61.27	60.678	2	1.7932E-05	53325	160511_QHF_FH_JSI9i_2	84.479	46.393			1.0662	1.1221	9.9525	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0579	1.3006	NaN	1	1	Median	1.1227	1.0933	3.6817	2	1	Median	1.0983	1.1598	13.477	2	1	Median	1123600000	509930000	613720000	0	0	0	276000000	127890000	148120000	443230000	215300000	227940000	404410000	166750000	237660000	51002	1356	48015	308339;308340;308341;308342;308343;308344;308345	414896;414897;414898;414899;414900;414901;414902;414903;414904	414900			9	
TLPHFIK	1	Unmodified	854.50142	0.50142377	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	1	3	43.645	42.78	3	0.0084918	36963	160511_QHF_FH_JSI11i_3	49.358	40.586			1.066	1.4894	73.05	6	2	Plateau	0.94806	0.76454	93.445	2	1	Median	0.78152	0.91901	NaN	1	0	Median	1.5577	1.4974	NaN	1	0	Median	0.64752	0.65825	114.72	2	1	Median	328000000	149500000	178500000	86878000	40500000	46379000	43900000	22266000	21634000	61976000	26216000	35760000	135240000	60516000	74727000	51003	1251	48016	308346;308347;308348;308349;308350;308351;308352;308353	414905;414906;414907;414908;414909;414910;414911;414912;414913;414914;414915;414916;414917;414918;414919;414920;414921;414922	414905			18	
TLPLCVIGGDHK	1	Unmodified	1308.686	0.68600643	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.8	0.4		1	4									2	3	57.592	57.196	2;3	0.00025188	49099	160511_QHF_FH_JSI12i_3	77.379	41.435			0.74359	0.72958	49.045	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57681	0.53954	3.3819	2	2	Median	1.1197	1.1927	30.212	2	1	Median	386290000	212980000	173310000	0	0	0	0	0	0	222480000	144290000	78192000	163810000	68690000	95118000	51004	3657	48017	308354;308355;308356;308357;308358	414923;414924;414925;414926;414927	414927			5	
TLPLDKSINHQIESPSER	1	Acetyl (K)	2105.0753	0.075296793	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		69.631	58.768	3	0.0052848	31608	160513_QHF_FH_JSI11Kac_5	47.047	28.909			0.45543	0.45612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45543	0.45612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7788200	4401500	3386700	0	0	0	0	0	0	7788200	4401500	3386700	0	0	0	51005	5463	48018	308359	414928	414928	3435		1	
TLPLHSFPTMLK	1	Unmodified	1383.7584	0.75844309	3192	Q6ZU65	UBN2	Ubinuclein-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.624	72.33	3	0.002479	62757	160511_QHF_FH_JSI12i_3	56.122	39.985			1.2283	1.2724	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2283	1.2724	NaN	1	1	Median	25038000	11945000	13093000	0	0	0	0	0	0	0	0	0	25038000	11945000	13093000	51006	3192	48019	308360	414929	414929			1	
TLPLTGSTFHDQIAMLSHR	0	Unmodified	2124.0786	0.078608032	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	78.191	77.223	3;4	9.1552E-10	64853	160511_QHF_FH_JSI10i_3	116.6	107.66			0.76909	0.79794	26.194	6	1	Median	1.0091	0.80919	56.666	2	0	Median	0.74436	0.87006	6.1777	2	1	Median	0.79988	0.76448	NaN	1	0	Median	0.75752	0.75687	NaN	1	0	Median	765620000	439190000	326430000	225010000	130920000	94091000	267990000	162230000	105760000	182930000	104720000	78209000	89685000	41323000	48362000	51007	1857	48020	308361;308362;308363;308364;308365;308366	414930;414931;414932;414933;414934;414935;414936;414937;414938;414939;414940	414933			11	
TLPLTGSTFHDQIAMLSHR	0	Oxidation (M)	2140.0735	0.073522654	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	1	0	By MS/MS	By matching			3	0			2							1	1			72.863	71.4	4	0.006216	58785	160511_QHF_FH_JSI9i_3	38.577	35.29			1.0426	0.99342	14.056	2	0	Median	1.3536	1.0972	NaN	1	0	Median	0.80302	0.89943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47943000	25823000	22120000	25875000	11291000	14584000	22068000	14532000	7536000	0	0	0	0	0	0	51008	1857	48020	308367;308368	414941	414941		1540	1	
TLPPALAALR	0	Unmodified	1021.6284	0.6284152	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.8	0.4		1	4							2	1	1	1	72.94	72.132	2	0.0018225	62632	160511_QHF_FH_JSI12i_3	63.565	49.893			0.97422	0.90883	16.73	5	0	Median	1.0868	0.91696	28.67	2	0	Median	0.99049	1.1048	NaN	1	0	Median	0.97422	0.90319	NaN	1	0	Median	0.86135	0.90883	NaN	1	0	Median	174880000	83849000	91029000	42119000	20447000	21672000	29132000	12683000	16449000	44585000	21524000	23062000	59042000	29195000	29847000	51009	3873	48021	308369;308370;308371;308372;308373	414942;414943	414943			2	
TLPPATSTEPSVILSK	1	Unmodified	1639.9033	0.90325265	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	66.683	66.082	2;3	2.9612E-05	58628	160511_QHF_FH_JSI9i_1	120.14	96.76			1.0598	1.0295	7.5365	8	1	Median	1.1347	0.93439	8.9239	2	0	Median	0.85159	1.0033	4.8221	2	0	Median	1.098	1.0634	5.7793	2	0	Median	1.0338	1.0722	4.2858	2	1	Median	814670000	373310000	441360000	177920000	70473000	107450000	192870000	85252000	107610000	247580000	118630000	128950000	196300000	98957000	97344000	51010	3323	48022	308374;308375;308376;308377;308378;308379;308380;308381;308382	414944;414945;414946;414947;414948;414949;414950;414951;414952;414953;414954;414955;414956;414957;414958;414959;414960;414961;414962	414958			19	
TLPQMFTK	1	Unmodified	964.50519	0.50518852	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	55.416	55.295	2	0.0067321	47486	160511_QHF_FH_JSI12i_3	61.679	26.871			0.89704	0.88408	34.055	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73059	0.69488	NaN	1	0	Median	1.1014	1.1248	NaN	1	0	Median	128740000	71006000	57734000	0	0	0	0	0	0	65068000	39043000	26025000	63672000	31963000	31709000	51011	700	48023	308383;308384	414963	414963			1	
TLPQQESLEIELAEEKPVK	2	Unmodified	2180.1576	0.15762944	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		70.027	70.027	3	0.041063	62416	160511_QHF_FH_JSI11i_3	31.067	25.857			0.0065526	0.0061561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.0065526	0.0061561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1053100000	1041400000	11694000	0	0	0	0	0	0	1053100000	1041400000	11694000	0	0	0	51012	3003	48024	308385	414964	414964			1	
TLPSGLDDYPR	0	Unmodified	1232.6037	0.60371659	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.33	0.471	2	1								2			1	54.91	53.953	2	0.0073282	47277	160511_QHF_FH_JSI9i_2	51.092	31.821			2.5625	2.6309	39.487	3	0	Plateau	1.772	1.4939	31.359	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5625	2.6309	NaN	1	0	Median	213460000	65946000	147510000	115170000	34057000	81113000	0	0	0	0	0	0	98288000	31888000	66399000	51013	2466	48025	308386;308387;308388	414965	414965			1	
TLPSHLCTSALLSK	1	Unmodified	1526.8127	0.81266351	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.827	58.827	3	0.016027	52236	160511_QHF_FH_JSI11i_3	40.857	27.708			9.8898	9.2347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9.8898	9.2347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12662000	3268100	9393800	0	0	0	0	0	0	12662000	3268100	9393800	0	0	0	51014	610	48026	308389	414966	414966			1	
TLPSMVHR	0	Unmodified	939.49602	0.49602082	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				29.364	27.984	3	0.011439	22813	160511_QHF_FH_JSI9i_3	35.445	14.746			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51015	3561	48027	308390	414967	414967			1	
TLPSTSSSGSK	1	Unmodified	1050.5193	0.51931826	912	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	14.189	13.911	2	0.0098532	11660	160511_QHF_FH_JSI12i_1	48.028	17.773			0.40995	0.40894	33.115	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33218	0.32357	NaN	1	0	Median	0.50591	0.51684	NaN	1	0	Median	176480000	125370000	51103000	0	0	0	0	0	0	90202000	64523000	25679000	86276000	60852000	25424000	51016	912	48028	308391;308392	414968;414969	414969			2	
TLPTPSPEAYQAMLLR	0	Unmodified	1786.9288	0.9287559	949	P0CG30;P0CG29	GSTT2B;GSTT2	Glutathione S-transferase theta-2B;Glutathione S-transferase theta-2	yes	no	0	0	0	0				By MS/MS	2	0		1											1	90.776	89.905	2	0.0022285	77413	160511_QHF_FH_JSI12i_2	55.426	49.454			0.93223	0.99657	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93223	0.99657	NaN	1	0	Median	24285000	12085000	12200000	0	0	0	0	0	0	0	0	0	24285000	12085000	12200000	51017	949	48029	308393	414970	414970			1	
TLPVDFHIK	1	Unmodified	1068.5968	0.59678072	3946	Q969R5	L3MBTL2	Lethal(3)malignant brain tumor-like protein 2	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		61.096	61.096	3	0.0025562	53520	160511_QHF_FH_JSI11i_2	52.278	40.565			1.9977	1.9123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9977	1.9123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10514000	4194600	6318900	0	0	0	0	0	0	10514000	4194600	6318900	0	0	0	51018	3946	48030	308394;308395	414971;414972	414972			2	
TLPWGPK	1	Unmodified	797.44357	0.44357454	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	3	1	48.71	47.912	2	0.015357	39308	160511_QHF_FH_JSI9i_3	64.776	53.948			0.90758	0.9702	21.293	8	5	Median	1.2507	1.0556	5.6949	2	1	Median	0.65221	0.74981	21.908	2	2	Median	1.064	1.0013	26.109	3	2	Plateau	0.86693	0.96639	NaN	1	0	Median	708000000	379260000	328740000	147450000	72964000	74483000	142070000	86047000	56025000	311460000	168880000	142580000	107020000	51367000	55652000	51019	2147	48031	308396;308397;308398;308399;308400;308401;308402;308403	414973;414974;414975;414976;414977;414978;414979;414980;414981	414978			9	
TLPYFIR	0	Unmodified	908.51199	0.51198846	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			67.368	65.879	2	0.013158	55134	160511_QHF_FH_JSI10i_3	71.359	24.314			0.44575	0.51282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44575	0.51282	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51289000	36571000	14718000	0	0	0	51289000	36571000	14718000	0	0	0	0	0	0	51020	4214	48032	308404	414982	414982			1	
TLQAAAFLDFLWHNMK	1	Unmodified	1904.9607	0.96072473	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.631	89.211	3	2.0375E-53	53306	160513_QHF_FH_JSI10Kac_6	191.37	168.01			1.1139	1.1292	6.7367	4	0	Median	1.1668	1.0144	NaN	1	0	Median	0.95955	1.14	NaN	1	0	Median	1.2712	1.1894	NaN	1	0	Median	1.0634	1.1185	NaN	1	0	Median	973500000	457030000	516460000	254510000	118570000	135940000	331960000	164280000	167680000	194200000	90989000	103220000	192820000	83190000	109630000	51021	2304	48033	308405;308406;308407;308408	414983;414984;414985;414986;414987	414987			5	
TLQAGLSSNHVSHGEVLR	0	Unmodified	1903.9864	0.98642221	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			34.09	32.675	3;4	2.4941E-07	26589	160511_QHF_FH_JSI9i_3	101.67	85.27			1.1335	1.0796	19.624	4	0	Median	1.6271	1.2913	9.7247	2	0	Median	0.8191	0.93551	4.6701	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	167840000	78635000	89205000	83484000	29131000	54353000	84356000	49504000	34852000	0	0	0	0	0	0	51022	648	48034	308409;308410;308411;308412	414988;414989;414990;414991;414992	414991			5	
TLQALEFHTVPFQLLAR	0	Unmodified	1983.0942	0.094181742	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	2	1	94.921	90.933	2;3	1.4336E-16	87236	160511_QHF_FH_JSI12i_3	165.9	146.6			0.96232	1.0558	12.375	6	1	Linear	1.2838	1.0558	2.0229	2	1	Median	1.0404	1.2374	NaN	1	0	Median	1.0734	1.023	22.011	2	0	Median	1.0442	1.0205	NaN	1	0	Median	886110000	443050000	443070000	162900000	67733000	95171000	159980000	82524000	77452000	435670000	218900000	216760000	127570000	73887000	53678000	51023	2271	48035	308413;308414;308415;308416;308417;308418	414993;414994;414995;414996;414997;414998	414997			6	
TLQALEIELQSQLAMK	1	Unmodified	1814.9812	0.9811854	69	CON__Q2M2I5;Q2M2I5	KRT24	Keratin, type I cytoskeletal 24	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.93	5.82	4	4	3						3	4	3	4	3	98.119	96.34	2	0.00044217	86320	160511_QHF_FH_JSI12i_2	78.908	40.913		+	1.0476	1.1673	38.871	11	11	Median	1.6784	1.4204	64.752	2	2	Median	1.0814	1.3134	21.756	3	3	Plateau	0.84019	0.78657	35.425	3	3	Median	1.0575	1.1673	47.548	3	3	Median	502750000	164380000	338370000	108460000	20353000	88111000	137210000	58480000	78734000	138630000	37039000	101590000	118450000	48507000	69943000	51024	69	48036	308419;308420;308421;308422;308423;308424;308425;308426;308427;308428;308429;308430;308431;308432	414999;415000;415001;415002;415003;415004;415005;415006;415007;415008;415009;415010;415011;415012	415001			14	
TLQALQIPAAK	1	Unmodified	1152.6867	0.68665836	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.37	9	5					1	1		4	3	6	3	59.157	57.066	2;3	1.9441E-09	51871	160511_QHF_FH_JSI12i_1	132.01	123.59			1.0368	1.0304	38.6	15	2	Median	1.1629	0.99404	52.139	3	1	Plateau	0.75268	0.93377	7.9175	3	0	Plateau	1.0637	1.0647	41.093	6	0	Median	0.94728	1.0286	35.474	3	1	Plateau	4351200000	2184100000	2167100000	885240000	446940000	438300000	1069800000	610480000	459280000	1387200000	642710000	744520000	1008900000	483930000	525000000	51025	1600	48037	308433;308434;308435;308436;308437;308438;308439;308440;308441;308442;308443;308444;308445;308446;308447;308448	415013;415014;415015;415016;415017;415018;415019;415020;415021;415022;415023;415024;415025;415026;415027;415028;415029;415030;415031	415016			18	
TLQATFPGAFGELYTQNAR	0	Unmodified	2084.0327	0.032703697	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	88.648	88.537	2	0.00023637	79063	160511_QHF_FH_JSI11i_3	83.047	66.514			0.91009	0.97852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91009	0.97852	NaN	1	1	Median	11771000	4705900	7065200	0	0	0	0	0	0	0	0	0	11771000	4705900	7065200	51026	1419	48038	308449;308450;308451	415032;415033;415034	415032			3	
TLQDIVYK	1	Unmodified	978.5386	0.53859714	1423	P35226	BMI1	Polycomb complex protein BMI-1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	41.357	40.902	2	0.0042139	36685	160511_QHF_FH_JSI10i_1	76.478	19.931			1.4291	1.7101	11.001	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.5217	1.8108	NaN	1	1	Median	1.7962	1.7101	NaN	1	1	Median	1.4291	1.464	NaN	1	0	Median	116950000	44119000	72829000	0	0	0	43588000	18407000	25182000	39690000	14938000	24753000	33669000	10774000	22895000	51027	1423	48039	308452;308453;308454	415035;415036;415037	415037			3	
TLQDQTLVQIFKPLTHSLSDK	2	Unmodified	2411.306	0.30602501	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		96.473	96.056	4	5.2964E-07	84752	160511_QHF_FH_JSI11i_3	81.967	73.577			1.026	0.93916	0.35752	3	0	Median	1.1125	0.93784	NaN	1	0	Median	0.79897	0.94422	NaN	1	0	Median	1.026	0.93916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61352000	28784000	32568000	10981000	5346800	5634300	15290000	7556600	7733200	35081000	15881000	19200000	0	0	0	51028	3849	48040	308455;308456;308457	415038;415039;415040;415041;415042	415038			5	
TLQEALK	1	Unmodified	801.45962	0.45961853	3103	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1.5	0.5	1	1								1	1			20.381	20.119	2	0.016874	16950	160511_QHF_FH_JSI9i_2	55.676	14.174			2.6473	3.1953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6473	3.1953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	289890000	64911000	224980000	0	0	0	289890000	64911000	224980000	0	0	0	0	0	0	51029	3103	48041	308458;308459	415043;415044	415044			2	
TLQEEVMEAMGIK	1	Unmodified	1477.7157	0.71565158	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	82.161	81.512	2	4.3991E-06	70387	160511_QHF_FH_JSI12i_2	124.42	81.679			1.2744	1.3582	13.367	8	6	Median	1.7176	1.4786	NaN	1	1	Median	1.0864	1.3068	8.1413	2	1	Median	1.4959	1.4847	20.244	2	1	Median	1.1945	1.3328	16.243	3	3	Median	337960000	150220000	187740000	38471000	14768000	23704000	106560000	52313000	54247000	99414000	41605000	57810000	93511000	41534000	51977000	51030	3960	48042	308460;308461;308462;308463;308464;308465;308466;308467	415045;415046;415047;415048;415049;415050;415051;415052;415053	415048			9	
TLQELSIDGLLNR	0	Unmodified	1470.8042	0.80420731	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	87.097	86.324	2	0.00052091	76737	160511_QHF_FH_JSI10i_2	89.548	53.604			0.56291	0.64893	0.57573	2	2	Median	NaN	NaN	NaN	0	0	Median	0.52231	0.64629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60666	0.65157	NaN	1	1	Median	17813000	10905000	6908700	0	0	0	9944000	5355900	4588100	0	0	0	7869400	5548700	2320600	51031	5656	48043	308468;308469	415054;415055	415055			2	
TLQEMEMSLPEDEGHTR	0	Unmodified	2001.8772	0.87719061	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.929	53.411	3	0.01426	46185	160511_QHF_FH_JSI11i_2	37.292	31.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51032	4903	48044	308470	415056	415056			1	
TLQEQLEK	1	Unmodified	987.52368	0.52367535	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.291	20.769	2	0.00014145	17774	160511_QHF_FH_JSI11i_1	125.16	35.408			1.086	1.0793	22.482	4	0	Median	1.4754	1.1782	NaN	1	0	Median	1.1373	1.3301	NaN	1	0	Median	1.037	0.9888	NaN	1	0	Median	0.74321	0.79289	NaN	1	0	Median	807380000	374740000	432640000	249030000	103690000	145340000	147590000	69289000	78304000	153710000	79179000	74528000	257050000	122580000	134470000	51033	4686	48045	308471;308472;308473;308474	415057;415058;415059;415060;415061;415062	415057			6	
TLQEQLENGPNTQLAR	0	Unmodified	1810.9173	0.91733959	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	2	2	45.796	45.017	2;3	4.9503E-98	40622	160511_QHF_FH_JSI11i_1	318.91	304.03			1.1204	1.0972	17.596	7	1	Median	1.6509	1.3469	NaN	1	0	Median	0.82077	0.97735	3.4016	2	0	Median	1.3211	1.2919	23.108	2	0	Median	1.0983	1.1482	16.364	2	1	Median	611100000	286260000	324840000	126010000	49615000	76393000	161240000	86012000	75227000	181420000	77583000	103840000	142430000	73052000	69378000	51034	5213	48046	308475;308476;308477;308478;308479;308480;308481;308482	415063;415064;415065;415066;415067;415068;415069;415070;415071;415072;415073;415074;415075	415063			13	
TLQEVLTMEYR	0	Unmodified	1381.6912	0.69115139	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				64.997	64.076	2	0.011847	56343	160511_QHF_FH_JSI9i_2	55.401	37.965			0.98945	0.87002	NaN	1	1	Median	0.98945	0.87002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15414000	7135500	8278600	15414000	7135500	8278600	0	0	0	0	0	0	0	0	0	51035	3075	48047	308483	415076	415076			1	
TLQEVTEMDSVK	1	Unmodified	1378.665	0.66499622	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	46.882	46.167	2	2.6359E-11	41579	160511_QHF_FH_JSI11i_1	199.19	181.32			0.81097	0.97152	58.435	7	6	Median	1.0882	0.8893	57.43	2	2	Median	0.81097	0.97152	NaN	1	0	Median	0.70211	0.68802	108.87	2	2	Median	0.68023	0.7183	63.771	2	2	Median	1530400000	800700000	729670000	447130000	211350000	235780000	293940000	145480000	148460000	365450000	179290000	186150000	423840000	264570000	159270000	51036	1898	48048	308484;308485;308486;308487;308488;308489;308490	415077;415078;415079;415080;415081;415082;415083;415084;415085;415086;415087	415079			11	
TLQEVTQLSQEAQR	0	Unmodified	1629.8322	0.83221298	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	49.6	48.819	2;3	3.313E-98	43407	160511_QHF_FH_JSI9i_1	260.33	225.64			0.96696	1.0741	14.917	12	0	Median	1.2605	1.0684	27.455	3	0	Median	0.83554	0.98908	7.4261	3	0	Plateau	1.0883	1.0895	12.067	3	0	Median	0.93749	0.99976	14.817	3	0	Plateau	2023700000	1007900000	1015800000	443070000	191480000	251590000	486230000	263520000	222700000	521510000	260550000	260960000	572860000	292310000	280560000	51037	1507	48049	308491;308492;308493;308494;308495;308496;308497;308498;308499;308500;308501;308502	415088;415089;415090;415091;415092;415093;415094;415095;415096;415097;415098;415099;415100;415101;415102;415103;415104;415105;415106;415107;415108;415109	415101			22	
TLQGHSVIR	0	Unmodified	1009.5669	0.56687757	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			13.943	13.03	2	0.010648	10259	160511_QHF_FH_JSI9i_3	49.715	23.821			1.2255	1.1665	2.2269	2	0	Median	1.4636	1.185	NaN	1	0	Median	1.0262	1.1483	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85919000	41121000	44798000	55050000	24402000	30648000	30870000	16719000	14150000	0	0	0	0	0	0	51038	3813	48050	308503;308504	415110;415111	415111			2	
TLQHDKLVR	1	Acetyl (K)	1150.6459	0.64585618	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.473	20.275	3	0.043216	11831	160513_QHF_FH_JSI11Kac_6	34.755	20.636			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3815800	3815800	0	0	0	0	0	0	0	3815800	3815800	0	0	0	0	51039	885	48051	308505	415112	415112			1	
TLQHIVTLLK	1	Unmodified	1164.723	0.72304386	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	57.165	56.054	3	0.0030692	47864	160511_QHF_FH_JSI12i_3	53.237	48.139			0.21636	0.31063	29.956	3	3	Plateau	0.39109	0.31063	NaN	1	1	Median	0.35752	0.41271	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.21177	0.22676	NaN	1	1	Median	191850000	126810000	65033000	50611000	33901000	16710000	66907000	39233000	27674000	0	0	0	74329000	53681000	20648000	51040	2119	48052	308506;308507;308508;308509	415113;415114;415115;415116	415116			4	
TLQIFNIEMK	1	Unmodified	1235.6584	0.6583947	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.05	2	4	4					2	2	3	3	4	4	85.062	82.111	2	2.1755E-14	74503	160511_QHF_FH_JSI11i_2	164.97	117.78			0.88923	0.89571	29.938	14	3	Median	1.0445	0.86237	37.469	3	1	Median	0.83434	1.0163	56.762	3	1	Median	0.93123	0.92673	7.7684	4	0	Median	0.73919	0.80997	15.455	4	1	Median	4275800000	2290000000	1985800000	800340000	382370000	417970000	1242700000	755220000	487480000	1111500000	538780000	572720000	1121300000	613660000	507640000	51041	1807;2155	48053	308510;308511;308512;308513;308514;308515;308516;308517;308518;308519;308520;308521;308522;308523	415117;415118;415119;415120;415121;415122;415123;415124;415125;415126;415127;415128;415129;415130;415131;415132;415133;415134;415135;415136;415137;415138;415139;415140;415141;415142;415143;415144;415145;415146;415147	415134			30	
TLQIFNIEMK	1	Oxidation (M)	1251.6533	0.65330932	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	4.52		1	1				2	5	5	2	4	2	6	76.625	68.328	2	4.1416E-06	33729	160513_QHF_FH_JSI10Kac_5	114.89	74.957			1.0445	1.1485	24.07	12	3	Median	1.2691	1.0793	14.158	2	0	Median	0.99758	1.1775	4.1092	3	1	Median	1.0136	1.008	NaN	1	1	Median	1.1743	1.2147	31.552	6	1	Median	549750000	234000000	315750000	76249000	31294000	44955000	104410000	51283000	53131000	20112000	10154000	9957500	348980000	141270000	207710000	51042	1807;2155	48053	308524;308525;308526;308527;308528;308529;308530;308531;308532;308533;308534;308535;308536;308537	415148;415149;415150;415151;415152;415153;415154;415155;415156;415157;415158;415159;415160;415161;415162;415163;415164	415159		1499	16	
TLQIFNIEMKSK	2	Acetyl (K);Oxidation (M)	1508.7909	0.79086543	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	1	0	1	1			By MS/MS		15	0								1				1		80.09	69.522	2	0.014123	36880	160513_QHF_FH_JSI11Kac_5	58.978	34.186			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	708670	708670	0	0	0	0	0	0	0	708670	708670	0	0	0	0	51043	1807;2155	48054	308538	415165	415165	1827	1499	1	
TLQLDNNFEVK	1	Unmodified	1319.6721	0.67213051	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	59.281	58.48	2	2.8395E-07	49956	160511_QHF_FH_JSI12i_2	140.49	78.486			0.80121	0.89914	18.7	6	1	Median	0.85556	0.70795	NaN	1	0	Median	0.73735	0.89914	4.6881	2	1	Median	0.96012	0.9347	NaN	1	0	Median	0.8131	0.88664	34.969	2	0	Median	1129800000	606460000	523320000	99118000	54521000	44598000	368690000	209640000	159040000	263730000	152810000	110920000	398260000	189490000	208760000	51044	5426	48055	308539;308540;308541;308542;308543;308544	415166;415167;415168;415169;415170;415171;415172	415167			7	
TLQLEYR	0	Unmodified	921.49198	0.4919813	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		38.167	37.463	2	0.0076089	32961	160511_QHF_FH_JSI10i_2	86.794	7.3253			0.94327	1.0463	11.794	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92981	1.1373	NaN	1	0	Median	0.95693	0.96258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	325480000	162160000	163320000	0	0	0	128650000	66048000	62601000	196830000	96116000	100710000	0	0	0	51045	4320	48056	308545;308546	415173;415174;415175	415175			3	
TLQLEYRFETVQK	1	Unmodified	1653.8726	0.87262123	4320	Q99829	CPNE1	Copine-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			66.976	59.102	3	0.017133	32471	160513_QHF_FH_JSI10Kac_6	30.961	1.6335			0.99239	1.1533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99239	1.1533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16169000	7679300	8489200	0	0	0	16169000	7679300	8489200	0	0	0	0	0	0	51046	4320	48057	308547	415176	415176			1	
TLQNILEVEK	1	Unmodified	1185.6605	0.66050319	5150	Q9NZD2	GLTP	Glycolipid transfer protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			58.409	58.015	2	0.0020057	52403	160511_QHF_FH_JSI10i_1	62.466	22.465			0.36927	0.42821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.36927	0.42821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39207000	25392000	13815000	0	0	0	39207000	25392000	13815000	0	0	0	0	0	0	51047	5150	48058	308548	415177	415177			1	
TLQNTPSLHSR	0	Unmodified	1252.6524	0.65239812	5690	Q9Y5Y5	PEX16	Peroxisomal membrane protein PEX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			18.065	16.989	2;3	0.011227	13630	160511_QHF_FH_JSI9i_3	45.997	5.9517			1.1869	1.3197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1869	1.3197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20864000	11076000	9788000	0	0	0	20864000	11076000	9788000	0	0	0	0	0	0	51048	5690	48059	308549;308550	415178;415179	415179			2	
TLQPSSQNTK	1	Unmodified	1102.5619	0.56185177	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	8.7165	8.4113	2	2.1746E-05	6235	160511_QHF_FH_JSI10i_1	108.43	59.015			1.0789	1.2294	36.332	5	3	Median	1.7495	1.4313	NaN	1	0	Median	1.0663	1.2294	NaN	1	1	Median	1.347	1.2784	70.349	2	2	Median	1.0789	1.111	NaN	1	0	Median	375600000	179950000	195660000	74323000	28210000	46113000	85380000	46675000	38705000	143760000	68509000	75250000	72143000	36553000	35590000	51049	2352	48060	308551;308552;308553;308554;308555	415180;415181;415182;415183;415184;415185	415184			6	
TLQQMLLK	1	Unmodified	973.56304	0.56303775	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.951	48.425	2	0.045941	41709	160511_QHF_FH_JSI11i_2	46.835	16.416			1.2307	1.2701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2307	1.2701	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40114000	20472000	19643000	0	0	0	0	0	0	40114000	20472000	19643000	0	0	0	51050	2547	48061	308556	415186	415186			1	
TLQQNAESR	0	Unmodified	1045.5152	0.51523593	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.9	4					1	1			1	1	2	2	7.1665	4.4898	2	7.6454E-12	4386	160511_QHF_FH_JSI12i_1	166.66	128.11			0.92101	0.89996	15.745	6	2	Median	1.1981	0.98805	NaN	1	1	Median	0.69503	0.81929	NaN	1	0	Median	0.96282	0.93801	19.064	2	0	Median	0.84493	0.89199	25.918	2	1	Median	2026300000	1165000000	861300000	472050000	235700000	236350000	530320000	339220000	191110000	511630000	293150000	218480000	512320000	296950000	215370000	51051	731	48062	308557;308558;308559;308560;308561;308562	415187;415188;415189;415190;415191;415192;415193	415188			7	
TLQQNAESRFN	0	Unmodified	1306.6266	0.6265773	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	22.057	21.245	2	5.3322E-05	18130	160511_QHF_FH_JSI9i_2	122.13	101.83			1.2835	1.2558	46.089	4	2	Median	1.352	1.14	NaN	1	1	Median	1.4127	1.6763	27.163	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6152	0.67114	NaN	1	0	Median	93762000	41483000	52279000	22288000	7554600	14734000	52861000	23680000	29181000	0	0	0	18612000	10248000	8363900	51052	731	48063	308563;308564;308565;308566;308567;308568	415194;415195;415196;415197;415198;415199;415200	415196			7	
TLQQQTFK	1	Unmodified	992.5291	0.52909508	1831;1830	P54727;P54725	RAD23B;RAD23A	UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.65	4	4	3			1	3	1		4	4	4	4	21.729	18.501	2	9.482E-15	15707	160511_QHF_FH_JSI9i_2	186.13	146.59			0.94478	0.94496	18.157	15	1	Median	1.0989	0.90491	23.192	4	1	Median	0.79092	0.94496	7.6759	3	0	Median	1.0141	0.98964	6.7416	4	0	Median	0.89058	0.95866	25.798	4	0	Median	5713000000	3085100000	2627900000	1143700000	543240000	600470000	1435100000	828910000	606210000	1861500000	980520000	880930000	1272700000	732450000	540270000	51053	1831;1830	48064	308569;308570;308571;308572;308573;308574;308575;308576;308577;308578;308579;308580;308581;308582;308583;308584	415201;415202;415203;415204;415205;415206;415207;415208;415209;415210;415211;415212;415213;415214;415215;415216;415217;415218;415219;415220;415221;415222;415223	415218			23	
TLQSLACGK	1	Unmodified	976.50117	0.50116577	2457;2456	Q13619;Q13620	CUL4A;CUL4B	Cullin-4A;Cullin-4B	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	23.137	22.365	2	0.00055069	18522	160511_QHF_FH_JSI11i_2	88.819	66.688			1.1591	1.2279	16.44	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3631	1.3793	NaN	1	1	Median	0.98569	1.0932	NaN	1	0	Median	137180000	62680000	74505000	0	0	0	0	0	0	63093000	26382000	36711000	74092000	36298000	37793000	51054	2456;2457	48065	308585;308586	415224;415225	415225			2	
TLQSLPAGTLLHLELSSVAAGK	1	Unmodified	2205.2369	0.23688281	4106	Q96HA7	TONSL	Tonsoku-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	99.774	99.689	3	1.8071E-09	86073	160511_QHF_FH_JSI12i_3	95.206	77.342			1.3699	1.4364	3.9239	2	2	Median	NaN	NaN	NaN	0	0	Median	1.266	1.4768	NaN	1	1	Median	1.4824	1.3971	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29536000	12452000	17084000	0	0	0	10051000	4076200	5974600	19486000	8376200	11109000	0	0	0	51055	4106	48066	308587;308588;308589	415226;415227;415228	415228			3	
TLQTAPEK	1	Unmodified	886.476	0.47599688	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	11.568	11.165	2	0.00051944	9038	160511_QHF_FH_JSI12i_1	105.57	55.528			0.64993	0.65332	34.549	4	1	Median	0.58806	0.48603	NaN	1	0	Median	0.94845	1.1041	NaN	1	1	Median	0.71218	0.69695	NaN	1	0	Median	0.59312	0.61242	NaN	1	0	Median	662400000	403200000	259190000	158540000	91204000	67338000	139130000	80696000	58439000	172240000	99161000	73075000	192480000	132140000	60341000	51056	3748	48067	308590;308591;308592;308593;308594	415229;415230;415231;415232;415233;415234	415231			6	
TLQTEQEANTEGQK	1	Unmodified	1575.7376	0.73764389	4335	Q99996	AKAP9	A-kinase anchor protein 9	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				14.458	13.49	2	1.1131E-09	10815	160511_QHF_FH_JSI9i_1	102.66	67.437			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51057	4335	48068	308595	415235	415235			1	
TLQTISLLGYMK	1	Unmodified	1366.753	0.75302336	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	2	4	1	3	87.728	85.181	2	9.3346E-29	43543	160513_QHF_FH_JSI10Kac_6	205.13	155.72			0.95583	0.99331	14.834	10	3	Median	1.0816	0.91591	13.533	2	0	Median	0.72394	0.86158	10.157	4	2	Linear	1.2357	1.2456	NaN	1	0	Median	1.1549	1.2156	11.691	3	1	Plateau	982200000	530540000	451660000	96531000	48042000	48489000	563560000	322840000	240720000	122900000	62768000	60129000	199220000	96899000	102320000	51058	403	48069	308596;308597;308598;308599;308600;308601;308602;308603;308604;308605	415236;415237;415238;415239;415240;415241;415242;415243;415244;415245;415246;415247;415248;415249;415250	415249			14	
TLQTISLLGYMK	1	Oxidation (M)	1382.7479	0.74793799	403	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.495								4	3	3	1	2	1	78.644	68.741	2;3	2.2604E-08	37098	160513_QHF_FH_JSI9Kac_6	114.83	88.319			0.82502	0.76788	9.6364	7	3	Median	0.89639	0.77166	9.9239	3	0	Median	0.63299	0.76788	NaN	1	1	Median	0.73292	0.7136	15.194	2	1	Median	0.6488	0.69884	NaN	1	1	Median	114510000	61717000	52791000	50742000	27804000	22938000	6555700	3968400	2587400	39565000	19915000	19651000	17645000	10030000	7614900	51059	403	48069	308606;308607;308608;308609;308610;308611;308612	415251;415252;415253;415254;415255;415256;415257	415256		164	7	
TLQTMQNFQK	1	Unmodified	1237.6125	0.61250714	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	0	0	0	0				By MS/MS	2.67	0.471		1	2										3	36.17	35.624	2	3.714E-05	30204	160511_QHF_FH_JSI12i_2	105.4	82.616			0.97985	1.1155	42.432	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97985	1.1155	42.432	3	3	Median	98612000	43685000	54926000	0	0	0	0	0	0	0	0	0	98612000	43685000	54926000	51060	5480	48070	308613;308614;308615	415258;415259;415260	415258			3	
TLQVQAAQFAK	1	Unmodified	1203.6612	0.66117189	2096	P78537	BLOC1S1	Biogenesis of lysosome-related organelles complex 1 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.52	1	4					2			1	1	4	1	48.734	46.187	2	4.5232E-07	39699	160511_QHF_FH_JSI11i_2	116.52	109.14			0.99218	0.98111	21.722	6	1	Median	1.124	0.97819	NaN	1	0	Median	1.017	1.2228	NaN	1	0	Median	0.95418	0.87292	19.225	3	1	Median	1.0855	1.1844	NaN	1	0	Median	226070000	116010000	110060000	24384000	10957000	13427000	25431000	14437000	10994000	137500000	72423000	65072000	38757000	18194000	20563000	51061	2096	48071	308616;308617;308618;308619;308620;308621;308622	415261;415262;415263;415264;415265;415266;415267;415268;415269;415270;415271	415270			11	
TLQYLSQGNVVFK	1	Unmodified	1495.8035	0.80347903	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	69.036	68.144	2	1.0409E-40	59646	160511_QHF_FH_JSI11i_2	199.08	173.03			0.76973	0.7746	21.922	5	2	Median	0.78575	0.66339	21.918	2	2	Median	0.76973	0.95562	NaN	1	0	Median	0.74071	0.75012	NaN	1	0	Median	0.86202	0.975	NaN	1	0	Median	351840000	201420000	150410000	115210000	65595000	49614000	60843000	33172000	27671000	83873000	51688000	32186000	91910000	50968000	40942000	51062	2105	48072	308623;308624;308625;308626;308627	415272;415273;415274;415275;415276	415275			5	
TLREQEIVASSPSLSGLK	1	Unmodified	1914.0422	0.042205751	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		59.093	58.255	3	4.0764E-07	48721	160511_QHF_FH_JSI10i_3	110.74	83.528			0.83764	0.91242	4.3957	3	0	Plateau	1.0551	0.91242	NaN	1	0	Median	0.81955	0.93937	NaN	1	0	Median	0.89634	0.86162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	163580000	81305000	82273000	28538000	12799000	15739000	73064000	37577000	35488000	61976000	30930000	31046000	0	0	0	51063	1670	48073	308628;308629;308630	415277;415278;415279;415280;415281	415279			4	
TLRPVEPESEFVIK	1	Unmodified	1642.893	0.89302232	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			60.926	59.402	3	1.81E-08	49764	160511_QHF_FH_JSI10i_3	100.45	80.347			0.62015	0.70967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62015	0.70967	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174790000	109720000	65067000	0	0	0	174790000	109720000	65067000	0	0	0	0	0	0	51064	5745	48074	308631;308632	415282;415283	415283			2	
TLSAPQEER	0	Unmodified	1029.5091	0.50908792	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				16.677	15.615	2	0.030252	12911	160511_QHF_FH_JSI9i_1	48.157	27.854			0.99324	0.80464	NaN	1	1	Median	0.99324	0.80464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51550000	26535000	25016000	51550000	26535000	25016000	0	0	0	0	0	0	0	0	0	51065	5646	48075	308633	415284	415284			1	
TLSASVDAITIHSHLWQTK	1	Unmodified	2107.1062	0.10620299	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.79	69.492	3	0.0021854	60156	160511_QHF_FH_JSI12i_3	48.376	38.094			1.0351	1.1123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0351	1.1123	NaN	1	1	Median	19545000	12221000	7323500	0	0	0	0	0	0	0	0	0	19545000	12221000	7323500	51066	2278	48076	308634	415285	415285			1	
TLSDATTK	1	Unmodified	835.42871	0.42871234	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7588	8.4081	2	0.0061634	6309	160511_QHF_FH_JSI12i_1	63.419	47.98			0.95593	1.0326	13.822	4	0	Median	1.5042	1.2251	NaN	1	0	Median	0.83577	1.0048	NaN	1	0	Median	1.0934	1.0611	NaN	1	0	Median	0.82399	0.87713	NaN	1	0	Median	2673400000	1323700000	1349700000	668800000	257710000	411090000	686390000	348420000	337970000	667770000	348710000	319060000	650440000	368830000	281600000	51067	5015	48077	308635;308636;308637;308638	415286;415287;415288;415289;415290;415291;415292	415287			7	
TLSDDLDEAAK	1	Unmodified	1176.551	0.55101232	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.121	34.515	2	0.00028536	30932	160511_QHF_FH_JSI11i_1	77.14	64.328			0.94976	0.95643	22.832	4	1	Median	1.1606	0.9625	NaN	1	0	Median	0.81435	0.9504	NaN	1	0	Median	1.1077	1.0727	NaN	1	0	Median	0.63178	0.63774	NaN	1	1	Median	537690000	284410000	253270000	114640000	60972000	53665000	161370000	87983000	73382000	147190000	71272000	75916000	114500000	64188000	50312000	51068	4623	48078	308639;308640;308641;308642	415293;415294;415295;415296	415293			3	
TLSDIFLLFK	1	Unmodified	1195.6853	0.68526137	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	2	3	3	100.51	97.903	2	1.4898E-15	88804	160511_QHF_FH_JSI12i_3	169.12	127.14			1.0279	0.92971	21.57	11	1	Median	1.1102	0.92971	10.913	3	1	Median	0.68738	0.79627	16.928	2	0	Median	1.1295	1.1131	23.074	3	0	Median	0.9193	1.0352	28.689	3	0	Median	2220800000	1112300000	1108600000	396900000	176300000	220610000	253420000	150930000	102490000	780320000	370310000	410000000	790200000	414730000	375470000	51069	566	48079	308643;308644;308645;308646;308647;308648;308649;308650;308651;308652;308653	415297;415298;415299;415300;415301;415302;415303;415304;415305;415306;415307;415308;415309;415310;415311	415309			13	
TLSDLKLDYLDLYLIHWPTGFKPGK	3	Unmodified	2932.5739	0.57386702	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	2	By MS/MS	By MS/MS			16	0									2	1	1			93.963	86.632	5	1.6249E-28	48238	160513_QHF_FH_JSI9Kac_6	146.64	133.4			0.59307	0.58421	31.604	2	1	Median	0.54911	0.46722	NaN	1	0	Median	0.64054	0.73051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	271100000	188990000	82105000	157760000	115500000	42263000	113340000	73495000	39842000	0	0	0	0	0	0	51070	1067	48080	308654;308655	415312;415313;415314	415312			3	
TLSDVEDQK	1	Unmodified	1033.4928	0.49276916	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	18.357	16.034	2	1.0463E-05	13559	160511_QHF_FH_JSI11i_1	105.57	66.025			2.3073	2.1743	13.246	4	4	Median	2.5708	2.1942	NaN	1	1	Median	2.384	2.8163	NaN	1	1	Median	2.233	2.1545	NaN	1	1	Median	2.0205	2.1398	NaN	1	1	Median	135280000	44872000	90408000	37564000	10850000	26713000	45975000	13691000	32284000	1647300	541040	1106200	50094000	19789000	30305000	51071	2947	48081	308656;308657;308658;308659;308660	415315;415316;415317;415318;415319;415320	415315			6	
TLSDYNIQK	1	Unmodified	1080.5451	0.54513908	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.49	9	4	5			3	3	5	4	7	10	8	8	35.02	30.222	2	2.1953E-12	27213	160511_QHF_FH_JSI11i_1	187	132.84			0.90793	0.93642	71.828	32	16	Median	1.1539	0.96929	114.43	7	3	Median	0.73209	0.80965	54.859	10	6	Median	0.90853	0.90466	56.141	7	3	Median	1.0271	1.0829	67.698	8	4	Median	130870000000	64321000000	66548000000	29938000000	17376000000	12562000000	36286000000	17832000000	18454000000	32483000000	14387000000	18095000000	32162000000	14726000000	17436000000	51072	2042	48082	308661;308662;308663;308664;308665;308666;308667;308668;308669;308670;308671;308672;308673;308674;308675;308676;308677;308678;308679;308680;308681;308682;308683;308684;308685;308686;308687;308688;308689;308690;308691;308692;308693	415321;415322;415323;415324;415325;415326;415327;415328;415329;415330;415331;415332;415333;415334;415335;415336;415337;415338;415339;415340;415341;415342;415343;415344;415345;415346;415347;415348;415349;415350;415351;415352;415353;415354;415355;415356;415357;415358;415359;415360;415361;415362;415363;415364;415365;415366;415367;415368;415369;415370;415371;415372;415373;415374;415375;415376;415377	415325			57	
TLSDYNIQKESTLHLVLR	1	Acetyl (K)	2171.1586	0.15863249	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	1	0	0	1		By MS/MS			16	0									1		1			80.641	75.045	3	5.1021E-45	41173	160513_QHF_FH_JSI10Kac_6	188.6	167.86			1.2985	1.532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2985	1.532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	133770000	62590000	71179000	0	0	0	133770000	62590000	71179000	0	0	0	0	0	0	51073	2042	48083	308694	415378	415378	2108		1	
TLSEAGK	1	Unmodified	704.37047	0.37046918	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	7.3314	6.7297	2	0.059447	4504	160511_QHF_FH_JSI12i_2	45.952	13.997			1.3168	1.4402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3168	1.4402	NaN	1	1	Median	186790000	111220000	75570000	0	0	0	0	0	0	0	0	0	186790000	111220000	75570000	51074	1039	48084	308695	415379	415379			1	
TLSEVDYAPAGPAR	0	Unmodified	1445.7151	0.71505795	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	44.176	43.533	2	2.2238E-07	39126	160511_QHF_FH_JSI10i_1	116.55	87.459			0.97059	1.0274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97059	1.0274	NaN	1	0	Median	105020000	55339000	49676000	0	0	0	0	0	0	0	0	0	105020000	55339000	49676000	51075	280	48085	308696;308697	415380;415381;415382	415382			3	
TLSFGSDLNYATR	0	Unmodified	1443.6994	0.69940789	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.3	3	3	2					2		2	3	3	2	65.335	62.477	2	1.2856E-15	55058	160511_QHF_FH_JSI9i_2	164.9	147.67			1.0009	1.0628	14.129	10	1	Median	1.17	0.98513	15.309	2	0	Median	0.93828	1.1215	14.232	3	0	Plateau	1.0042	1.0178	8.2675	3	0	Median	0.91935	0.97951	6.9512	2	1	Median	975350000	457220000	518130000	257450000	109340000	148110000	94236000	40247000	53989000	343700000	174960000	168730000	279970000	132670000	147300000	51076	2502	48086	308698;308699;308700;308701;308702;308703;308704;308705;308706;308707	415383;415384;415385;415386;415387;415388;415389;415390;415391;415392;415393;415394	415390			11	
TLSFGSDLNYATREDAPIGPHLQSMPSEQIR	0	Unmodified	3429.6623	0.66231746	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		82.117	81.46	3;4	2.9024E-10	71741	160511_QHF_FH_JSI9i_2	65.766	60.047			1.5412	1.4711	24.694	5	3	Median	2.2866	1.9212	37.749	2	2	Median	1.2732	1.5805	18.483	2	1	Median	1.5412	1.4399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	339940000	130340000	209600000	101160000	23138000	78022000	161510000	74257000	87252000	77275000	32948000	44327000	0	0	0	51077	2502	48087	308708;308709;308710;308711;308712	415395;415396;415397;415398;415399;415400	415398			6	
TLSFLAYIIR	0	Unmodified	1195.6965	0.69649476	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	94.207	86.173	2	2.1258E-17	50331	160513_QHF_FH_JSI10Kac_6	166.52	124.86			0.937	0.95439	17.738	3	0	Median	1.1137	0.95439	NaN	1	0	Median	0.937	1.1212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73393	0.78675	NaN	1	0	Median	288490000	143860000	144630000	54338000	22843000	31495000	139800000	64229000	75572000	0	0	0	94348000	56785000	37563000	51078	5618	48088	308713;308714;308715	415401;415402;415403	415403			3	
TLSFSFPPNTVTGSER	0	Unmodified	1738.8526	0.85261407	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		6	10							2	1	7	6	78.645	78.057	2	2.2335E-11	69824	160511_QHF_FH_JSI11i_3	110.66	70.072			0.71086	0.76276	20.896	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68265	0.67805	NaN	1	1	Median	0.74023	0.82983	21.333	3	2	Median	69648000	43217000	26432000	0	0	0	0	0	0	18297000	11211000	7086400	51351000	32006000	19345000	51079	3173	48089	308716;308717;308718;308719;308720;308721;308722;308723;308724;308725;308726;308727;308728;308729;308730;308731	415404;415405;415406;415407;415408;415409;415410;415411;415412;415413;415414;415415;415416;415417;415418;415419	415406			16	
TLSFSHDGK	1	Unmodified	990.47706	0.47705951	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.4	0.49		3	2									2	3	17.751	17.29	2;3	0.0010337	13782	160511_QHF_FH_JSI12i_3	70.816	51.03			0.89663	0.90649	34.737	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92126	0.90649	10.605	2	0	Median	0.65678	0.68792	52.405	2	1	Median	213870000	120220000	93648000	0	0	0	0	0	0	117970000	67771000	50198000	95897000	52447000	43450000	51080	4132	48090	308732;308733;308734;308735;308736	415420;415421;415422;415423;415424	415424			5	
TLSGAQDSEAAFAK	1	Unmodified	1394.6678	0.66777341	2682	Q15554	TERF2	Telomeric repeat-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	35.557	35.012	2	0.00019833	30939	160511_QHF_FH_JSI9i_1	90.793	80.788			1.1459	1.1166	55.135	6	4	Median	1.2022	0.97791	NaN	1	0	Median	1.0922	1.275	NaN	1	1	Median	0.98257	0.93931	115.16	2	1	Median	1.0606	1.1071	34.713	2	2	Median	301770000	161600000	140170000	58863000	33533000	25330000	56788000	31330000	25459000	94115000	53523000	40592000	92003000	43210000	48793000	51081	2682	48091	308737;308738;308739;308740;308741;308742	415425;415426;415427;415428;415429;415430	415430			6	
TLSGLEVSMVTAVPGR	0	Unmodified	1615.8603	0.86034198	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	79.25	78.423	2;3	5.6884E-30	69235	160511_QHF_FH_JSI9i_2	188.29	172.03			0.95613	1.0868	26.831	7	6	Median	0.92452	0.78912	48.966	2	1	Median	0.95441	1.172	NaN	1	1	Median	0.95568	0.95421	13.19	2	2	Median	0.99688	1.1359	6.2537	2	2	Median	341050000	168340000	172710000	54577000	24859000	29718000	45714000	23144000	22570000	134700000	67642000	67056000	106070000	52700000	53366000	51082	765	48092	308743;308744;308745;308746;308747;308748;308749	415431;415432;415433;415434;415435;415436;415437;415438	415434			8	
TLSGMESYCVR	0	Unmodified	1301.5744	0.57440707	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	41.663	40.917	2	2.7443E-23	35097	160511_QHF_FH_JSI11i_2	177.06	163.71			0.80533	0.96286	30.523	7	4	Median	1.1535	0.98711	NaN	1	1	Median	0.70793	0.855	22.38	2	1	Median	0.76952	0.76693	32.176	2	1	Median	1.0506	1.1551	46.893	2	1	Median	1296600000	679080000	617510000	120390000	59439000	60950000	324520000	180720000	143800000	489610000	266490000	223110000	362070000	172420000	189650000	51083	1722	48093	308750;308751;308752;308753;308754;308755;308756;308757	415439;415440;415441;415442;415443;415444;415445;415446;415447;415448;415449;415450	415447			12	
TLSGSGSGSGSSYSGSSSR	0	Unmodified	1706.7343	0.73434942	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	3	1	1	11.248	10.83	2	1.6977E-24	8767	160511_QHF_FH_JSI12i_1	178.07	167.16			0.6163	0.73097	25.319	7	4	Median	1.0209	0.88767	23.011	2	1	Median	0.52542	0.62491	15.751	3	3	Median	0.54668	0.52346	NaN	1	0	Median	0.81749	0.86803	NaN	1	0	Median	247790000	138400000	109400000	47292000	22386000	24906000	126650000	78427000	48227000	37682000	22486000	15196000	36165000	15097000	21068000	51084	3341	48094	308758;308759;308760;308761;308762;308763;308764;308765	415451;415452;415453;415454;415455;415456;415457;415458;415459;415460;415461	415454			11	
TLSHNLLVSEVYNQLK	1	Unmodified	1856.9996	0.99961265	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	2	3	79.011	78.277	2;3	1.0024E-21	69594	160511_QHF_FH_JSI11i_3	135.58	118.22			1.0179	0.96372	22.716	8	1	Median	1.4706	1.2047	43.44	2	1	Median	0.88026	1.0647	23.668	2	0	Median	1.1742	1.0778	NaN	1	0	Median	0.9024	0.92143	10.213	3	0	Median	1033200000	546560000	486660000	86487000	34223000	52265000	142420000	64681000	77737000	350570000	194140000	156430000	453750000	253510000	200230000	51085	2457	48095	308766;308767;308768;308769;308770;308771;308772;308773;308774	415462;415463;415464;415465;415466;415467;415468;415469;415470;415471;415472;415473;415474;415475;415476;415477	415464			13	
TLSHPQQMALLDQTK	1	Unmodified	1709.8771	0.87705468	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							2	2	5	5	47.372	46.712	2;3	3.2029E-07	41157	160511_QHF_FH_JSI11i_3	136.7	112.32			1.0025	0.95746	21.015	13	3	Median	1.0463	0.9035	8.2041	2	0	Median	0.95293	1.1829	26.831	2	0	Median	0.81936	0.82381	15.195	4	1	Median	1.0785	1.1917	16.422	5	2	Median	1890700000	976800000	913890000	220410000	127130000	93273000	352300000	198570000	153730000	729150000	394840000	334310000	588830000	256250000	332580000	51086	5616	48096	308775;308776;308777;308778;308779;308780;308781;308782;308783;308784;308785;308786;308787;308788	415478;415479;415480;415481;415482;415483;415484;415485;415486;415487;415488;415489;415490;415491;415492;415493;415494;415495;415496;415497;415498;415499;415500;415501	415479			24	
TLSIFMEYMPGGSIK	1	Unmodified	1672.8205	0.820451	5537	Q9Y2U5	MAP3K2	Mitogen-activated protein kinase kinase kinase 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.715	81.366	2	4.8114E-06	45597	160513_QHF_FH_JSI11Kac_6	107.85	88.604			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51087	5537	48097	308789	415502	415502			1	
TLSIFYQAGTSK	1	Unmodified	1314.682	0.68196691	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				69.505	60.845	2	0.0003278	32323	160513_QHF_FH_JSI9Kac_6	87.568	62.182			1.3226	1.1285	NaN	1	0	Median	1.3226	1.1285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7903400	3099300	4804000	7903400	3099300	4804000	0	0	0	0	0	0	0	0	0	51088	1193	48098	308790	415503	415503			1	
TLSLCHVIHFCAK	1	Unmodified	1584.7905	0.79048828	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3		1	2	3	63.787	59.165	4	7.139E-26	32275	160513_QHF_FH_JSI10Kac_6	146.5	126.76			0.86998	0.92377	28.391	5	1	Median	NaN	NaN	NaN	0	0	Median	0.86998	1.0127	NaN	1	0	Median	0.74132	0.70805	1.0873	2	1	Median	1.0621	1.137	29.37	2	0	Median	178300000	98903000	79399000	0	0	0	61327000	35927000	25400000	63222000	33264000	29958000	53753000	29712000	24040000	51089	1733	48099	308791;308792;308793;308794;308795;308796	415504;415505;415506;415507;415508;415509;415510	415510			7	
TLSLDEVYLIDSGAQYK	1	Unmodified	1913.9622	0.9622241	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								1	3	2	4	92.064	91.663	2;3	9.3674E-17	83497	160511_QHF_FH_JSI12i_1	125.53	101.78			0.98796	1.0998	33.922	5	4	Median	NaN	NaN	NaN	0	0	Median	0.76827	0.86454	34.034	2	1	Median	1.4507	1.4316	NaN	1	1	Median	1.0295	1.1292	40.385	2	2	Median	96163000	47075000	49088000	3710300	0	3710300	46458000	30025000	16433000	27157000	8921200	18236000	18838000	8128600	10709000	51090	4930	48100	308797;308798;308799;308800;308801;308802;308803;308804;308805;308806	415511;415512;415513;415514;415515;415516;415517;415518;415519;415520;415521	415515			11	
TLSLHYFEEPELR	0	Unmodified	1632.8148	0.814772	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	71.499	71.074	3	1.8332E-05	63280	160511_QHF_FH_JSI11i_3	99.941	79.514			0.97258	0.93541	14.087	4	2	Median	NaN	NaN	NaN	0	0	Median	0.68417	0.81017	NaN	1	1	Median	0.99916	0.93541	15.098	2	1	Median	1.0609	1.0621	NaN	1	0	Median	204330000	99814000	104510000	0	0	0	17852000	10993000	6859000	94881000	41834000	53047000	91593000	46986000	44607000	51091	2297	48101	308807;308808;308809;308810;308811	415522;415523;415524;415525;415526	415522			4	
TLSPEFNER	0	Unmodified	1091.5247	0.52473799	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	33.665	32.734	2	0.0015359	27829	160511_QHF_FH_JSI11i_2	68.625	18.018			1.1252	1.1033	8.0572	4	0	Median	1.2444	1.0964	NaN	1	0	Median	0.87785	1.0691	NaN	1	0	Median	1.0627	1.1101	NaN	1	0	Median	1.1914	1.2787	NaN	1	0	Median	191600000	99872000	91730000	36012000	14243000	21769000	37700000	18457000	19243000	77636000	45652000	31984000	40255000	21520000	18735000	51092	4399	48102	308812;308813;308814;308815	415527;415528;415529	415528			3	
TLSPGDSFSTFDTPYCR	0	Unmodified	1949.8465	0.84654241	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	70.986	70.34	2	2.2659E-06	62453	160511_QHF_FH_JSI10i_2	119.69	110.87			1.036	1.2588	22.394	6	1	Median	NaN	NaN	NaN	0	0	Median	1.0303	1.2588	14.575	2	0	Median	0.9768	0.95003	2.7578	2	0	Median	1.4184	1.5107	10.152	2	1	Median	190700000	89219000	101480000	0	0	0	48133000	21935000	26199000	76108000	38977000	37132000	66459000	28307000	38152000	51093	4924	48103	308816;308817;308818;308819;308820;308821;308822;308823	415530;415531;415532;415533;415534;415535;415536;415537;415538;415539;415540;415541;415542;415543	415542			14	
TLSPTGNISSAPK	1	Unmodified	1271.6721	0.67213051	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	32.602	32.146	2	0.0023261	28634	160511_QHF_FH_JSI10i_1	68.069	40.327			0.60211	0.66778	44.975	2	2	Median	NaN	NaN	NaN	0	0	Median	0.41505	0.48587	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87348	0.91781	NaN	1	1	Median	72090000	40720000	31370000	0	0	0	42359000	24663000	17696000	0	0	0	29731000	16057000	13675000	51094	620	48104	308824;308825	415544;415545	415545			2	
TLSQGESQTSEHELFLDTK	1	Unmodified	2149.0175	0.017507143	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	50.786	49.824	3	2.8976E-05	42968	160511_QHF_FH_JSI11i_2	56.719	46.961			1.3755	1.4121	21.74	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2351	1.2109	NaN	1	0	Median	1.532	1.6467	NaN	1	0	Median	93782000	40517000	53265000	0	0	0	0	0	0	48751000	24854000	23897000	45031000	15663000	29368000	51095	3004	48105	308826;308827;308828	415546;415547;415548	415547			3	
TLSQLSQQEGIK	1	Unmodified	1330.7092	0.70924429	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								2	4	4	3	36.397	35.733	2	2.2088E-05	31175	160511_QHF_FH_JSI9i_2	131.82	110.36			1.1303	1.2928	51.424	13	12	Median	1.241	1.0706	86.223	2	2	Median	1.0627	1.3088	68.057	4	4	Median	1.221	1.2365	53.165	4	4	Median	1.1303	1.2928	27.928	3	2	Median	443340000	206330000	237010000	44993000	17879000	27114000	116630000	63565000	53061000	152100000	66424000	85675000	129620000	58465000	71159000	51096	1462	48106	308829;308830;308831;308832;308833;308834;308835;308836;308837;308838;308839;308840;308841	415549;415550;415551;415552;415553;415554;415555;415556;415557;415558;415559;415560;415561;415562	415558			14	
TLSQWIAENQDSLGSK	1	Unmodified	1775.869	0.86899241	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	66.574	65.974	2;3	4.4831E-10	58694	160511_QHF_FH_JSI11i_3	142.85	119.48			1.0663	1.1148	116.17	4	3	Median	0.16123	0.13432	NaN	1	1	Median	0.73605	0.86116	NaN	1	1	Median	1.6953	1.5554	10.602	2	1	Median	NaN	NaN	NaN	0	0	Median	174680000	98829000	75856000	63254000	50246000	13008000	27365000	15008000	12358000	84066000	33575000	50491000	0	0	0	51097	1418	48107	308842;308843;308844;308845;308846	415563;415564;415565;415566;415567;415568	415563			6	
TLSSFFTPR	0	Unmodified	1054.5447	0.54474515	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		4								1		2	1	5.6105	5.2629	3	0.058689	3155	160511_QHF_FH_JSI9i_2	14.118	2.4047			0.63619	0.55331	49.476	4	0	Linear	0.67836	0.56681	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88881	0.90027	0	2	0	Median	1.6462	1.8755	NaN	1	0	Median	1313200000	575400000	737850000	715200000	334360000	380840000	0	0	0	530320000	211920000	318400000	67729000	29115000	38615000	51098	1148	48108	308847;308848;308849;308850	415569;415570	415569			2	
TLSSIMQTEDQK	1	Unmodified	1379.6602	0.66024519	5849				yes	yes	0	0	0	0			By MS/MS		1	0	2											2		63.038	62.596	2	0.011777	56770	160511_QHF_FH_JSI11i_1	46.158	16.685	+		0.99063	0.95056	0	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99063	0.95056	0	2	0	Median	NaN	NaN	NaN	0	0	Median	75080000	40372000	34708000	0	0	0	0	0	0	75080000	40372000	34708000	0	0	0	51099	5849	48109	308851;308852	415571;415572	415571			1	
TLSSLALVFALHHYKPTPLYFMDEIDAALDFK	2	Unmodified	3665.8844	0.88437847	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			97.782	92.062	4	1.07E-123	53672	160513_QHF_FH_JSI10Kac_6	236.34	221.29			0.45613	0.53111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45613	0.53111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194040000	120660000	73381000	0	0	0	194040000	120660000	73381000	0	0	0	0	0	0	51100	4989	48110	308853	415573	415573			1	
TLSSLYSEMQK	1	Unmodified	1285.6224	0.62240312	3357	Q86WC4	OSTM1	Osteopetrosis-associated transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	52.604	51.711	2	3.5561E-06	45205	160511_QHF_FH_JSI9i_2	109.66	80.577			0.86716	0.90759	63.57	6	5	Median	0.48504	0.41216	NaN	1	1	Median	0.62121	0.75931	106.82	2	2	Median	0.99947	1.0183	45.539	2	2	Median	1.0292	1.1163	NaN	1	0	Median	243570000	134250000	109320000	24872000	16699000	8173500	54904000	30294000	24610000	119580000	65794000	53787000	44208000	21461000	22747000	51101	3357	48111	308854;308855;308856;308857;308858;308859;308860	415574;415575;415576;415577;415578;415579;415580;415581;415582	415577			9	
TLSSMIMEDTSGDYK	1	Unmodified	1676.7273	0.72733848	2986	Q5VT79;P13928	ANXA8L2;ANXA8	Annexin A8-like protein 2;Annexin A8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	1	3	3	61.696	60.983	2	1.6159E-16	52301	160511_QHF_FH_JSI12i_2	120.96	104.33			0.9461	0.92296	29.048	7	3	Median	1.1258	0.92296	15.819	3	2	Plateau	0.83122	0.97151	NaN	1	0	Median	0.70592	0.69612	56.007	2	1	Median	1.0057	1.0403	NaN	1	0	Median	298370000	146690000	151680000	101230000	42142000	59093000	57463000	30260000	27203000	87095000	46559000	40536000	52578000	27727000	24851000	51102	2986	48112	308861;308862;308863;308864;308865;308866;308867;308868;308869;308870	415583;415584;415585;415586;415587;415588;415589;415590;415591;415592;415593;415594;415595;415596	415585			14	
TLSSPSNRPSGETSVPPPPAVGR	0	Unmodified	2289.1713	0.17132244	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6	5.93	2	2	3					3		3	5	2		44.532	40.649	3	2.366E-19	33335	160511_QHF_FH_JSI9i_3	143.15	107.76			0.96108	1.025	18.188	10	2	Median	1.2865	1.0304	9.5548	3	0	Median	0.87492	1.0197	11.488	5	2	Median	0.87095	0.85797	41.342	2	0	Median	NaN	NaN	NaN	0	0	Median	601400000	291640000	309760000	307890000	145610000	162280000	247980000	118700000	129290000	45524000	27332000	18193000	0	0	0	51103	3801	48113	308871;308872;308873;308874;308875;308876;308877;308878;308879;308880	415597;415598;415599;415600;415601;415602;415603;415604;415605;415606;415607;415608;415609;415610	415602			14	
TLSSVQNEVQEALQR	0	Unmodified	1700.8693	0.86932676	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	69.58	68.83	2;3	1.5354E-57	60273	160511_QHF_FH_JSI11i_2	264.68	208.12			1.0066	0.99114	20.29	9	6	Median	0.9399	0.80913	28.693	2	1	Median	0.8751	1.0701	17.835	2	1	Median	0.88858	0.89721	17.567	3	2	Median	1.031	1.1039	4.6635	2	2	Median	760470000	394170000	366300000	166340000	78059000	88277000	218930000	115270000	103660000	239340000	136170000	103180000	135860000	64666000	71192000	51104	1016	48114	308881;308882;308883;308884;308885;308886;308887;308888;308889	415611;415612;415613;415614;415615;415616;415617;415618;415619	415617			9	
TLSTDSIQYHLQMEDK	1	Unmodified	1907.8935	0.8934926	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		58.281	57.586	3	9.4755E-05	50951	160511_QHF_FH_JSI10i_2	79.393	63.211			1.1569	1.2786	11.218	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9611	1.1811	NaN	1	1	Median	1.3926	1.3841	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77864000	28417000	49447000	0	0	0	34482000	15651000	18831000	43382000	12766000	30616000	0	0	0	51105	5520	48115	308890;308891	415620;415621	415621			1	
TLSTIATSTDAASVVHSTDLVVEAIVENLK	1	Unmodified	3083.6238	0.62378991	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	6.14		8	9						7	7	6	5	6	102.28	99.7	3;4	5.2949E-291	54977	160513_QHF_FH_JSI10Kac_6	342.03	325.1			1.0079	0.99916	19.446	23	3	Median	1.2073	1.0289	22.364	6	2	Median	0.75073	0.90751	23.38	6	1	Median	1.0327	1.0308	22.152	5	0	Median	0.88614	0.95816	13.347	6	0	Median	3589300000	1842300000	1747000000	712930000	321750000	391180000	927580000	553040000	374540000	967210000	486240000	480970000	981580000	481230000	500350000	51106	2770	48116	308892;308893;308894;308895;308896;308897;308898;308899;308900;308901;308902;308903;308904;308905;308906;308907;308908;308909;308910;308911;308912;308913;308914;308915	415622;415623;415624;415625;415626;415627;415628;415629;415630;415631;415632;415633;415634;415635;415636;415637;415638;415639;415640;415641;415642;415643;415644;415645;415646;415647;415648;415649;415650;415651;415652;415653;415654;415655;415656;415657;415658;415659;415660	415658			39	
TLSTSDDVEDRENEK	1	Unmodified	1736.7701	0.77006623	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	18.633	18.012	3	0.0002701	15233	160511_QHF_FH_JSI9i_1	83.823	73.007			1.2292	1.3371	43.538	5	3	Median	1.0325	0.83617	66.385	2	2	Median	1.2292	1.4275	NaN	1	0	Median	1.5778	1.5075	NaN	1	0	Median	1.0632	1.0986	NaN	1	1	Median	263850000	114720000	149130000	73203000	38921000	34283000	69934000	24103000	45831000	72722000	31623000	41099000	47993000	20077000	27916000	51107	3962	48117	308916;308917;308918;308919;308920	415661;415662;415663;415664;415665;415666	415666			6	
TLSVEPSQQLDTASTEETDPETSQPEPNRPSELDLR	0	Unmodified	3995.872	0.8719717	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		68.614	68.207	3	2.085E-16	61984	160511_QHF_FH_JSI11i_1	77.733	76.071			1.078	1.011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.078	1.011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64060000	31834000	32227000	0	0	0	0	0	0	64060000	31834000	32227000	0	0	0	51108	3736	48118	308921	415667;415668;415669	415668			3	
TLSYLLPAIVHINHQPFLER	0	Unmodified	2360.3005	0.30048612	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	87.202	79.096	3;4	1.8308E-71	45112	160513_QHF_FH_JSI10Kac_6	209.85	174.22			0.9192	0.89646	23.894	7	0	Median	1.1244	0.95409	8.8103	2	0	Median	0.90267	1.0763	3.3866	2	0	Median	0.90466	0.85381	0.95837	2	0	Median	0.5182	0.54048	NaN	1	0	Median	6632600000	3336100000	3296500000	1510900000	787620000	723240000	2306400000	946140000	1360300000	2131200000	1175300000	955850000	684140000	427010000	257130000	51109	1128	48119	308922;308923;308924;308925;308926;308927;308928	415670;415671;415672;415673;415674;415675;415676;415677;415678	415678			9	
TLSYLLPAIVHINHQPFLERGDGPICLVLAPTR	0	Unmodified	3710.013	0.013041655	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			93.341	87.621	4	2.5608E-08	50255	160513_QHF_FH_JSI10Kac_6	91.48	76.503			1.6589	1.9787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6589	1.9787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75232000	17903000	57329000	0	0	0	75232000	17903000	57329000	0	0	0	0	0	0	51110	1128	48120	308929	415679	415679			1	
TLTAAAVSGAQPILSK	1	Unmodified	1526.8668	0.86680757	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.94	6.17	9	7	3			4	5	5		8	9	8	8	64.69	60.347	2;3	1.7255E-30	52831	160511_QHF_FH_JSI9i_2	194.7	168.18			1.0177	0.9791	35.368	30	8	Median	1.2956	1.0579	20.495	8	3	Median	0.74062	0.8886	24.759	8	2	Median	1.0412	1.036	45.162	8	1	Median	1.0177	1.0662	45.052	6	2	Median	4602300000	2246500000	2355800000	1098800000	511200000	587630000	1166700000	651440000	515270000	1436000000	651590000	784430000	900760000	432250000	468510000	51111	434	48121	308930;308931;308932;308933;308934;308935;308936;308937;308938;308939;308940;308941;308942;308943;308944;308945;308946;308947;308948;308949;308950;308951;308952;308953;308954;308955;308956;308957;308958;308959;308960;308961;308962	415680;415681;415682;415683;415684;415685;415686;415687;415688;415689;415690;415691;415692;415693;415694;415695;415696;415697;415698;415699;415700;415701;415702;415703;415704;415705;415706;415707;415708;415709;415710;415711;415712;415713;415714;415715;415716;415717;415718;415719;415720;415721;415722;415723;415724;415725;415726;415727;415728	415711			48	
TLTAEEAEEEWER	0	Unmodified	1591.7002	0.70019575	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.53	52.866	2	0.00092537	48064	160511_QHF_FH_JSI12i_1	77.64	70.512			1.2618	1.3599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2618	1.3599	NaN	1	1	Median	36798000	15443000	21355000	0	0	0	0	0	0	0	0	0	36798000	15443000	21355000	51112	1432	48122	308963	415729	415729			1	
TLTAIAVILTNFHDGRPLPIER	0	Unmodified	2446.3696	0.36962832	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			92.588	85.298	4	1.0436E-29	49406	160513_QHF_FH_JSI10Kac_6	160.13	151.77			1.0374	1.0458	9.3556	2	0	Median	1.3061	1.1174	NaN	1	0	Median	0.82397	0.97889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	314850000	163460000	151390000	152290000	69055000	83237000	162560000	94403000	68152000	0	0	0	0	0	0	51113	2540	48123	308964;308965	415730;415731;415732	415732			3	
TLTAVHDAILEDLVFPSEIVGK	1	Unmodified	2366.2733	0.2733279	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5.33		14	4						4	4	4	5	9	100.88	99.292	2;3;4	7.2733E-212	88270	160511_QHF_FH_JSI12i_3	415.56	400.4			0.89152	0.90358	14.472	20	1	Median	1.0138	0.85617	8.5318	4	0	Median	0.77072	0.92126	8.2974	4	0	Median	0.92586	0.91249	7.1336	4	0	Median	0.94065	0.97666	18.915	8	1	Median	29703000000	16101000000	13602000000	3814600000	2129500000	1685100000	4791700000	2682500000	2109200000	6542700000	3708900000	2833800000	14554000000	7580200000	6974200000	51114	1979	48124	308966;308967;308968;308969;308970;308971;308972;308973;308974;308975;308976;308977;308978;308979;308980;308981;308982;308983;308984;308985;308986;308987	415733;415734;415735;415736;415737;415738;415739;415740;415741;415742;415743;415744;415745;415746;415747;415748;415749;415750;415751;415752;415753;415754;415755;415756;415757;415758	415754			26	
TLTAVHDAILEDLVFPSEIVGKR	1	Unmodified	2522.3744	0.37443893	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				101.21	101.13	4	0.0052249	88928	160511_QHF_FH_JSI9i_2	37.56	29.372			4.4481	3.7728	NaN	1	0	Median	4.4481	3.7728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39419000	12131000	27288000	39419000	12131000	27288000	0	0	0	0	0	0	0	0	0	51115	1979	48125	308988	415759	415759			0	
TLTDEELADWK	1	Unmodified	1319.6245	0.62451161	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	60.537	59.82	2	1.7555E-13	54303	160511_QHF_FH_JSI12i_1	132.32	112.53			1.2459	1.2004	18.264	3	3	Median	1.2459	1.0361	NaN	1	1	Median	1.0301	1.2004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4588	1.4897	NaN	1	1	Median	525320000	254180000	271150000	142530000	64341000	78187000	196590000	105480000	91111000	0	0	0	186200000	84353000	101850000	51116	1500	48126	308989;308990;308991;308992	415760;415761;415762;415763	415761			4	
TLTDEELFLMDAQRK	1	Unmodified	1808.8978	0.8978497	4177	Q96MW7	TIGD1	Tigger transposable element-derived protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			1	0	2									1	1			71.692	71.102	3	0.00040125	64663	160511_QHF_FH_JSI10i_1	58.487	35.006			1.1362	1.115	9.1889	2	0	Median	1.4385	1.1899	NaN	1	0	Median	0.89742	1.0449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	393820000	147220000	246600000	152840000	42790000	110050000	240980000	104430000	136550000	0	0	0	0	0	0	51117	4177	48127	308993;308994	415764;415765;415766;415767	415765			4	
TLTDELAALQITGVK	1	Unmodified	1571.877	0.8770379	3602	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	3	2	88.39	87.841	2;3	3.9518E-05	80098	160511_QHF_FH_JSI11i_1	120.57	90.83			0.75007	0.78087	28.971	6	3	Median	NaN	NaN	NaN	0	0	Median	0.73438	0.81667	NaN	1	0	Median	0.7661	0.74664	22.631	3	2	Median	0.67319	0.70492	54.972	2	1	Median	109220000	57896000	51322000	3587200	0	3587200	18921000	10445000	8475800	51090000	27196000	23894000	35620000	20255000	15365000	51118	3602	48128	308995;308996;308997;308998;308999;309000;309001	415768;415769;415770;415771;415772;415773;415774	415769			7	
TLTDEVNSPDSDRR	0	Unmodified	1603.7438	0.7437919	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	20.755	20.244	3	0.0002889	16635	160511_QHF_FH_JSI11i_2	56.599	49.191			1.0376	1.0502	6.06	4	0	Median	1.358	1.1455	NaN	1	0	Median	0.79544	0.98883	NaN	1	0	Median	1.0641	1.0461	NaN	1	0	Median	1.0118	1.0543	NaN	1	0	Median	178960000	86030000	92928000	53394000	22547000	30847000	48421000	26749000	21672000	55044000	24926000	30118000	22099000	11808000	10291000	51119	3685	48129	309002;309003;309004;309005	415775;415776;415777	415775			3	
TLTDGVLDINHEQENTPSTSGK	1	Unmodified	2355.119	0.1190121	2357	Q13136	PPFIA1	Liprin-alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		51.981	51.307	3	2.2441E-13	46179	160511_QHF_FH_JSI10i_1	116.39	108.49			1.1395	1.1946	15.205	3	0	Median	1.1395	0.92823	NaN	1	0	Median	1.0237	1.2198	NaN	1	0	Median	1.2496	1.1946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115540000	62641000	52900000	24338000	11713000	12625000	43837000	25778000	18059000	47366000	25150000	22217000	0	0	0	51120	2357	48130	309006;309007;309008	415778;415779;415780;415781;415782;415783	415780			6	
TLTDISNQWDNTLHLASTYLSHQEK	1	Unmodified	2914.4097	0.40971481	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	100.81	100.82	4	1.6272E-12	87421	160511_QHF_FH_JSI12i_3	109.06	91.412			0.88832	0.71609	21.584	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91784	0.85258	NaN	1	1	Median	0.73147	0.73263	27.901	2	2	Median	181190000	106330000	74858000	0	0	0	0	0	0	68259000	40307000	27952000	112930000	66020000	46906000	51121	3811	48131	309009;309010;309011	415784;415785;415786	415785			3	
TLTELILDAQEHVK	1	Unmodified	1608.8723	0.87228688	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							3	3	3	3	75.324	74.583	2;3	1.0694E-18	64838	160511_QHF_FH_JSI12i_3	143.97	116.65			0.75203	0.82675	38.838	8	3	Median	0.59833	0.52766	48.653	3	2	Median	0.83224	1.0149	38.291	2	1	Median	1.134	1.1368	NaN	1	0	Median	0.75203	0.80548	12.977	2	0	Median	648400000	350520000	297870000	139640000	75265000	64372000	167570000	107160000	60410000	117750000	54498000	63248000	223440000	113600000	109840000	51122	1117	48132	309012;309013;309014;309015;309016;309017;309018;309019;309020;309021;309022;309023	415787;415788;415789;415790;415791;415792;415793;415794;415795;415796;415797;415798;415799;415800;415801	415801			15	
TLTEPCPLASESR	0	Unmodified	1459.6977	0.69769333	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		42.421	42.059	2	0.024328	37844	160511_QHF_FH_JSI11i_1	48.998	29.236			0.3942	0.38413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3942	0.38413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	838090000	532860000	305230000	0	0	0	0	0	0	838090000	532860000	305230000	0	0	0	51123	3943	48133	309024	415802	415802			1	
TLTEPSVDFNHSDDFTPISTVQK	1	Unmodified	2577.2235	0.22347717	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			75.234	75.061	3	3.0824E-05	68027	160511_QHF_FH_JSI10i_1	55.734	41.186			1.032	1.2042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.032	1.2042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28939000	20606000	8333000	0	0	0	28939000	20606000	8333000	0	0	0	0	0	0	51124	3136	48134	309025	415803	415803			1	
TLTETIYKNYYR	1	Acetyl (K)	1605.8039	0.80387296	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		70.54	59.706	2	0.061003	32065	160513_QHF_FH_JSI11Kac_5	47.938	24.333			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	815080	815080	0	0	0	0	0	0	0	815080	815080	0	0	0	0	51125	3223	48135	309026	415804	415804			1	
TLTFFVALPGVAVSMLNVYLK	1	Unmodified	2282.2748	0.27484822	1011	P12074	COX6A1	Cytochrome c oxidase subunit 6A1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	4	1	3	103.03	96.883	2;3	5.6486E-47	57129	160513_QHF_FH_JSI10Kac_6	182.02	161.63			0.68325	0.69443	28.294	11	7	Median	0.71512	0.61395	10.096	3	3	Median	0.72282	0.85314	35.068	4	2	Median	1.1005	1.0548	NaN	1	1	Median	0.58097	0.61485	19.265	3	1	Median	601040000	373790000	227250000	171970000	99835000	72138000	371500000	238870000	132630000	6912600	2870800	4041800	50653000	32205000	18449000	51126	1011	48136	309027;309028;309029;309030;309031;309032;309033;309034;309035;309036;309037	415805;415806;415807;415808;415809;415810;415811;415812;415813;415814;415815;415816	415815			11	
TLTGALNAHNK	1	Unmodified	1138.6095	0.60947067	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	1	3		16.273	15.742	2;3	2.1363E-06	12802	160511_QHF_FH_JSI11i_3	102.42	85.429			4.5108	5.0678	70.731	3	2	Plateau	1.6168	1.3825	NaN	1	1	Median	4.8222	5.595	NaN	1	0	Median	2.4653	2.3057	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	252300000	67177000	185120000	8337600	3078800	5258800	118510000	34711000	83799000	125450000	29387000	96065000	0	0	0	51127	4564	48137	309038;309039;309040;309041;309042	415817;415818;415819;415820;415821	415819			5	
TLTGKTITLEVEPSDTIENVK	2	Unmodified	2287.2159	0.2158726	2042	P62979;P62987;P0CG47;P0CG48	RPS27A;UBA52;UBB;UBC	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin	yes	no	0	0	0	1			By MS/MS		3	0			1									1		69.361	69.361	3	2.6713E-07	61863	160511_QHF_FH_JSI11i_3	84.993	63.792			0.46444	0.43613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46444	0.43613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45771000	30969000	14802000	0	0	0	0	0	0	45771000	30969000	14802000	0	0	0	51128	2042	48138	309043	415822	415822			1	
TLTGLFR	0	Unmodified	806.46504	0.46503826	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.443	49.916	2	0.037222	43138	160511_QHF_FH_JSI11i_2	50.025	14.824			0.74411	0.75912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74411	0.75912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58907000	38185000	20722000	0	0	0	0	0	0	58907000	38185000	20722000	0	0	0	51129	950	48139	309044	415823	415823			1	
TLTGTAALTVQSQEDNLR	0	Unmodified	1916.9803	0.98033378	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.61	6	7	1							3	4	3	4	57.099	56.341	2;3	5.129E-66	48208	160511_QHF_FH_JSI12i_2	273.3	258.74			0.93681	0.98368	12.876	13	3	Median	1.0333	0.87733	14.168	3	0	Median	0.75477	0.90526	11.166	4	2	Median	1.073	0.8513	12.837	3	0	Plateau	1.1292	1.1488	7.3608	3	1	Plateau	821290000	428530000	392770000	167980000	89016000	78965000	308310000	175610000	132700000	174550000	85605000	88948000	170450000	78293000	92155000	51130	943	48140	309045;309046;309047;309048;309049;309050;309051;309052;309053;309054;309055;309056;309057;309058	415824;415825;415826;415827;415828;415829;415830;415831;415832;415833;415834;415835;415836;415837;415838;415839;415840;415841;415842;415843;415844	415826			20	
TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK	1	Unmodified	3057.5693	0.56925192	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	100.71	100.57	3;4	3.1013E-121	88262	160511_QHF_FH_JSI11i_2	257.07	237.31			0.90846	0.90007	21.786	6	1	Median	1.0482	0.88906	NaN	1	1	Median	0.7482	0.91122	NaN	1	0	Median	0.75181	0.76754	6.6277	2	0	Median	1.1089	1.2328	0.45603	2	0	Median	748560000	386660000	361900000	39417000	14095000	25321000	85065000	49690000	35375000	311270000	174200000	137080000	312800000	148670000	164130000	51131	1939	48141	309059;309060;309061;309062;309063;309064	415845;415846;415847;415848;415849;415850;415851;415852;415853	415850			8	
TLTGVLPER	0	Unmodified	984.5604	0.56039521	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		52.44	41.726	2	0.018018	23199	160513_QHF_FH_JSI11Kac_5	48.794	22.41			0.99254	0.97478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99254	0.97478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5210900	2405300	2805500	0	0	0	0	0	0	5210900	2405300	2805500	0	0	0	51132	3791	48142	309065	415854	415854			1	
TLTHYKSAVK	2	Acetyl (K)	1188.6503	0.65027285	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		30.598	21.359	3	0.020481	12271	160513_QHF_FH_JSI11Kac_6	45.077	35.889			0.099985	0.094831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.099985	0.094831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9873700	9416200	457480	0	0	0	0	0	0	9873700	9416200	457480	0	0	0	51133	900	48143	309066	415855	415855	657		1	
TLTIGSAGK	1	Unmodified	846.48108	0.48108226	2762	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		5.67	5.91	2	2					2			1	2	3		26.081	22.694	2	0.046198	14317	160513_QHF_FH_JSI11Kac_4	39.547	0			0.9003	0.99687	13.006	6	0	Median	1.1981	1.0418	NaN	1	0	Median	0.89067	1.0352	11.571	2	0	Median	0.85444	0.84025	13.743	3	0	Median	NaN	NaN	NaN	0	0	Median	301230000	146090000	155140000	56680000	27275000	29405000	65092000	31854000	33239000	179450000	86961000	92493000	0	0	0	51134	2762	48144	309067;309068;309069;309070;309071;309072	415856;415857;415858	415856			3	
TLTLPSLPLNSADEIYELR	0	Unmodified	2144.1365	0.13650007	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.55	101.48	2	3.9028E-09	89302	160511_QHF_FH_JSI9i_2	147.39	31.587			1.1233	0.92286	NaN	1	1	Median	1.1233	0.92286	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	403130000	175810000	227320000	403130000	175810000	227320000	0	0	0	0	0	0	0	0	0	51135	3173	48145	309073	415859	415859			1	
TLTLVDTGIGMTK	1	Unmodified	1348.7272	0.72720254	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.97	6.32	17	21	9			7	19	14	5	21	27	23	21	71.325	65.915	2;3	2.7881E-82	62477	160511_QHF_FH_JSI9i_2	249.5	0			0.99687	0.9738	20.841	89	33	Median	1.0875	0.9051	15.146	20	8	Median	0.81653	0.93763	23.773	26	11	Median	1.0382	1.0136	23.287	23	10	Median	1.0102	1.0831	16.343	20	4	Median	95658000000	45402000000	50256000000	17514000000	8200200000	9314200000	25511000000	12933000000	12578000000	33236000000	14838000000	18398000000	19397000000	9431000000	9965800000	51136	898	48146	309074;309075;309076;309077;309078;309079;309080;309081;309082;309083;309084;309085;309086;309087;309088;309089;309090;309091;309092;309093;309094;309095;309096;309097;309098;309099;309100;309101;309102;309103;309104;309105;309106;309107;309108;309109;309110;309111;309112;309113;309114;309115;309116;309117;309118;309119;309120;309121;309122;309123;309124;309125;309126;309127;309128;309129;309130;309131;309132;309133;309134;309135;309136;309137;309138;309139;309140;309141;309142;309143;309144;309145;309146;309147;309148;309149;309150;309151;309152;309153;309154;309155;309156;309157;309158;309159;309160;309161;309162;309163;309164;309165	415860;415861;415862;415863;415864;415865;415866;415867;415868;415869;415870;415871;415872;415873;415874;415875;415876;415877;415878;415879;415880;415881;415882;415883;415884;415885;415886;415887;415888;415889;415890;415891;415892;415893;415894;415895;415896;415897;415898;415899;415900;415901;415902;415903;415904;415905;415906;415907;415908;415909;415910;415911;415912;415913;415914;415915;415916;415917;415918;415919;415920;415921;415922;415923;415924;415925;415926;415927;415928;415929;415930;415931;415932;415933;415934;415935;415936;415937;415938;415939;415940;415941;415942;415943;415944;415945;415946;415947;415948;415949;415950;415951;415952;415953;415954;415955;415956;415957;415958;415959;415960;415961;415962;415963;415964;415965;415966;415967;415968;415969;415970;415971;415972;415973;415974;415975;415976;415977;415978;415979;415980;415981;415982;415983;415984;415985;415986;415987;415988;415989;415990;415991;415992;415993;415994;415995;415996;415997;415998;415999;416000;416001;416002;416003;416004;416005;416006;416007;416008;416009;416010;416011;416012;416013;416014;416015;416016;416017;416018;416019;416020;416021;416022;416023;416024;416025;416026;416027;416028;416029;416030;416031;416032;416033;416034;416035;416036;416037;416038;416039;416040;416041;416042	415973			182	
TLTLVDTGIGMTKADLINNLGTIAK	2	Unmodified	2572.4146	0.41458918	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	101.27	101.16	3	2.9576E-29	87901	160511_QHF_FH_JSI12i_3	159.51	0			1.0007	1.1699	30.247	3	1	Median	0.85968	0.69591	NaN	1	0	Median	1.0007	1.1699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1562	1.1802	NaN	1	1	Median	607220000	355390000	251820000	132550000	74982000	57565000	225470000	147550000	77923000	0	0	0	249200000	132860000	116340000	51137	898	48147	309166;309167;309168	416043;416044	416044			2	
TLTMIALILTQK	1	Unmodified	1344.8051	0.80505893	5452	Q9UNY4	TTF2	Transcription termination factor 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		94.907	85.515	2	0.0046351	48423	160513_QHF_FH_JSI11Kac_6	65.695	40.309			2.3439	2.3342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3439	2.3342	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	34593000	13771000	20822000	0	0	0	0	0	0	34593000	13771000	20822000	0	0	0	51138	5452	48148	309169	416045	416045			1	
TLTPAGDLQETFSGMDQVR	0	Unmodified	2064.9786	0.97861922	2900	Q5JRX3	PITRM1	Presequence protease, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		82.685	82.323	2	2.7244E-13	75103	160511_QHF_FH_JSI11i_1	137.46	122.42			1.5767	1.5071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5767	1.5071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21462000	10628000	10834000	0	0	0	0	0	0	21462000	10628000	10834000	0	0	0	51139	2900	48149	309170	416046	416046			1	
TLTPDQWAR	0	Unmodified	1086.5458	0.54580778	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.49	5	3	1				3	4		2	5	4	5	46.396	41.035	2	3.951E-08	35494	160511_QHF_FH_JSI11i_2	146.58	135.22			1.017	1.1211	14.736	15	4	Median	1.3762	1.129	11.084	2	1	Median	0.85716	0.98828	11.8	5	2	Median	1.1444	1.1603	16.039	4	0	Median	1.0023	1.0944	21.462	4	1	Median	2961700000	1400800000	1560800000	92149000	31859000	60290000	863280000	385190000	478100000	1171200000	551130000	620070000	835020000	432660000	402360000	51140	4695	48150	309171;309172;309173;309174;309175;309176;309177;309178;309179;309180;309181;309182;309183;309184;309185;309186	416047;416048;416049;416050;416051;416052;416053;416054;416055;416056;416057;416058;416059;416060;416061;416062;416063;416064;416065;416066;416067;416068	416062			22	
TLTPGGHAEHDGK	1	Unmodified	1318.6266	0.6265773	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	6.5593	6.4704	2;3	1.8016E-10	4073	160511_QHF_FH_JSI11i_3	149.96	116.7			0.95713	0.91761	21.457	4	1	Median	NaN	NaN	NaN	0	0	Median	0.53523	0.65567	NaN	1	1	Median	1.0637	0.98589	14.351	2	0	Median	0.94163	0.94529	NaN	1	0	Median	341570000	183360000	158200000	0	0	0	31640000	19465000	12175000	148270000	73330000	74941000	161660000	90570000	71088000	51141	1789	48151	309187;309188;309189;309190	416069;416070;416071;416072	416069			4	
TLTPIIQEYFEHGDTNEVAEMLR	0	Unmodified	2705.3007	0.30068164	2846	Q53EL6	PDCD4	Programmed cell death protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.25	6.76		1	1						2	2		1	1	96.739	92.165	3	1.2899E-17	46627	160513_QHF_FH_JSI9Kac_6	128.55	112.85			1.4038	1.2613	16.226	4	1	Median	1.444	1.2363	13.862	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2418	1.1667	NaN	1	0	Median	1.5029	1.5996	NaN	1	0	Median	1241900000	653730000	588170000	244450000	97334000	147110000	0	0	0	951720000	537970000	413740000	45732000	18423000	27309000	51142	2846	48152	309191;309192;309193;309194	416073;416074;416075;416076;416077	416075			4	
TLTPISAAYAR	0	Unmodified	1162.6346	0.63462279	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.59	3	2	1				2	4	4	4	3	5	4	54.33	47.371	2	5.7249E-07	40676	160511_QHF_FH_JSI12i_3	118.18	94.022			0.97973	1.0661	19.407	15	2	Median	1.253	1.0842	46.675	3	1	Median	0.97103	1.1327	11.886	3	0	Median	1.1002	1.0661	5.5079	5	0	Median	0.94394	1.0297	5.2544	4	1	Linear	1851500000	936250000	915300000	31777000	12476000	19300000	13545000	7066800	6477900	787570000	387570000	400000000	1018700000	529140000	489510000	51143	1381	48153	309195;309196;309197;309198;309199;309200;309201;309202;309203;309204;309205;309206;309207;309208;309209;309210	416078;416079;416080;416081;416082;416083;416084;416085;416086;416087;416088;416089;416090;416091;416092;416093;416094	416093			17	
TLTPSYYR	0	Unmodified	999.50255	0.50254598	4884	Q9NP72	RAB18	Ras-related protein Rab-18	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.75	5.65		3	3					1	1	3		2	3	32.882	29.785	2	0.0012589	25154	160511_QHF_FH_JSI12i_2	91.9	6.6352			1.0529	1.0664	15.796	7	0	Median	1.3633	1.1207	13.026	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96234	0.91346	8.8757	2	0	Median	0.96406	1.0373	17.293	2	0	Median	541460000	281330000	260130000	100960000	45760000	55199000	0	0	0	224340000	122830000	101510000	216170000	112740000	103420000	51144	4884	48154	309211;309212;309213;309214;309215;309216;309217;309218	416095;416096;416097;416098;416099;416100	416097			6	
TLTSDVANLANEK	1	Unmodified	1374.6991	0.69907354	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By matching		By MS/MS		1	0	2									1		1		50.858	50.046	2	5.0225E-05	45323	160511_QHF_FH_JSI11i_1	111.52	91.534			0.77071	0.70085	19.879	2	0	Median	0.72852	0.60895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81534	0.80663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	231560000	129050000	102520000	96015000	48613000	47402000	0	0	0	135550000	80434000	55113000	0	0	0	51145	475	48155	309219;309220	416101;416102	416101			2	
TLTSGGHAEHEGK	1	Unmodified	1322.6215	0.62149192	1700	P50238	CRIP1	Cysteine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.24		12	12					1	10	10	8	9	8	5.524	2.8419	2;3;4	6.4377E-82	2768	160511_QHF_FH_JSI9i_2	244.12	213.87			0.92435	0.93368	16.382	35	1	Median	1.1671	0.97722	22.223	10	1	Median	0.73556	0.87374	10.73	8	0	Median	0.85682	0.88584	14.623	9	0	Median	0.92547	0.98911	6.3273	8	0	Median	49992000000	23041000000	26951000000	4863400000	2117100000	2746300000	6113100000	3460200000	2652900000	18773000000	9259400000	9513900000	20242000000	8204000000	12038000000	51146	1700	48156	309221;309222;309223;309224;309225;309226;309227;309228;309229;309230;309231;309232;309233;309234;309235;309236;309237;309238;309239;309240;309241;309242;309243;309244;309245;309246;309247;309248;309249;309250;309251;309252;309253;309254;309255	416103;416104;416105;416106;416107;416108;416109;416110;416111;416112;416113;416114;416115;416116;416117;416118;416119;416120;416121;416122;416123;416124;416125;416126;416127;416128;416129;416130;416131;416132;416133;416134;416135;416136;416137;416138;416139;416140;416141;416142;416143;416144;416145;416146;416147;416148;416149;416150;416151;416152;416153;416154;416155;416156;416157;416158;416159;416160	416133			56	
TLTSIVHLER	0	Unmodified	1167.6612	0.66117189	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6.5	6.02		3	7						4	5	4	3	2	49.638	46.28	2;3	5.127E-07	25270	160513_QHF_FH_JSI11Kac_6	105.46	87.193			1.034	1.035	27.704	14	2	Median	1.1681	0.99596	22.443	5	1	Median	0.97876	1.1517	23.198	4	1	Median	0.88921	0.83826	15.724	3	0	Median	1.151	1.2099	68.054	2	0	Median	1096900000	536330000	560580000	319500000	131410000	188090000	432530000	214830000	217700000	205360000	108060000	97300000	139520000	82033000	57488000	51147	3290	48157	309256;309257;309258;309259;309260;309261;309262;309263;309264;309265;309266;309267;309268;309269	416161;416162;416163;416164;416165;416166;416167;416168;416169;416170;416171;416172	416165			10	
TLTTMAPYLSTEDVPLAR	0	Unmodified	1978.0081	0.0081284304	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								3	4	3	2	87.73	87.158	2;3	1.117E-16	76803	160511_QHF_FH_JSI9i_2	166.48	144.72			1.1364	1.0879	26.32	11	7	Median	1.3963	1.2234	45.409	3	2	Median	0.87977	1.0879	10.629	3	3	Median	1.1364	1.0776	11.844	3	2	Median	1.0846	1.1754	13.094	2	0	Median	370470000	173580000	196890000	64580000	28649000	35931000	109030000	51490000	57540000	136740000	66158000	70586000	60119000	27285000	32834000	51148	3741	48158	309270;309271;309272;309273;309274;309275;309276;309277;309278;309279;309280;309281	416173;416174;416175;416176;416177;416178;416179;416180;416181;416182;416183;416184;416185;416186;416187;416188	416183			16	
TLTTVQGIADDYDK	1	Unmodified	1538.7464	0.74641766	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	3	2	2	58.444	56.869	2;3	7.1511E-52	50545	160511_QHF_FH_JSI9i_1	216.06	198.19			1.073	1.0258	26.816	9	3	Median	1.217	0.9909	16.916	2	0	Median	0.81245	0.96846	18.49	3	2	Median	1.0045	0.97724	6.8605	2	0	Median	1.5481	1.6624	27.31	2	1	Median	3805900000	1750000000	2055900000	710350000	290560000	419790000	1663900000	882110000	781810000	869760000	307930000	561830000	561860000	269400000	292460000	51149	1522	48159	309282;309283;309284;309285;309286;309287;309288;309289;309290	416189;416190;416191;416192;416193;416194;416195;416196;416197;416198;416199;416200	416197			11	
TLTTVQGIADDYDKK	2	Unmodified	1666.8414	0.84138068	1522	P41567;O60739	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	1	2	51.219	50.452	3	1.6547E-10	43267	160511_QHF_FH_JSI12i_2	123.02	112.97			1.129	1.2001	11.898	5	2	Median	NaN	NaN	NaN	0	0	Median	0.97185	1.1727	18.998	2	1	Median	1.285	1.2001	NaN	1	1	Median	1.0425	1.1255	13.16	2	0	Median	329700000	171770000	157930000	0	0	0	141650000	70439000	71215000	69993000	33616000	36378000	118050000	67720000	50332000	51150	1522	48160	309291;309292;309293;309294;309295	416201;416202;416203;416204;416205	416202			5	
TLTVEVSVETIRNPQQQESLK	1	Unmodified	2398.2704	0.27036779	731	O95816	BAG2	BAG family molecular chaperone regulator 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	65.71	65.612	3	5.0933E-07	56684	160511_QHF_FH_JSI12i_3	83.849	63.224			0.93124	0.8744	17.197	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.035	0.98152	16.342	2	2	Median	0.78029	0.78722	NaN	1	0	Median	84148000	43211000	40938000	0	0	0	0	0	0	57855000	30252000	27602000	26294000	12958000	13335000	51151	731	48161	309296;309297;309298	416206;416207;416208;416209	416209			4	
TLTVHEK	1	Unmodified	826.45487	0.45486751	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	8.6791	8.236	2	0.013531	6114	160511_QHF_FH_JSI9i_2	69.998	32.353			0.88285	0.87906	26.697	4	1	Median	0.89239	0.78528	NaN	1	1	Median	0.87341	1.0975	NaN	1	0	Median	0.99372	0.98404	NaN	1	0	Median	0.53556	0.6003	NaN	1	0	Median	305390000	156720000	148670000	36787000	19227000	17560000	95585000	51695000	43890000	101220000	47317000	53899000	71807000	38481000	33326000	51152	2801	48162	309299;309300;309301;309302	416210;416211;416212;416213;416214	416211			5	
TLTVLHPLK	1	Unmodified	1020.6332	0.63316622	3942	Q969M3	YIPF5	Protein YIPF5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6.13		5	7						5	5	4	3	5	46.825	43.756	2;3	7.2677E-06	36797	160511_QHF_FH_JSI10i_3	102.07	92.479			0.95958	1.018	30.618	16	4	Median	1.4409	1.1969	26.785	5	1	Median	0.88985	1.0496	35.299	4	1	Median	1.0476	1.0049	8.5385	3	1	Plateau	0.83068	0.83793	38.294	4	1	Median	4428300000	2140800000	2287500000	772550000	301560000	470990000	850690000	430130000	420560000	998520000	467880000	530650000	1806600000	941210000	865350000	51153	3942	48163	309303;309304;309305;309306;309307;309308;309309;309310;309311;309312;309313;309314;309315;309316;309317;309318;309319	416215;416216;416217;416218;416219;416220;416221;416222;416223;416224;416225;416226;416227;416228;416229;416230;416231;416232;416233;416234;416235;416236;416237;416238;416239;416240;416241;416242;416243;416244	416221			29	
TLTWEAMEQIR	0	Unmodified	1376.6758	0.67583567	4897	Q9NPE2	NGRN	Neugrin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		72.581	71.956	2	0.055804	63024	160511_QHF_FH_JSI11i_2	42.336	32.382			0.57761	0.59808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57761	0.59808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35493000	23683000	11811000	0	0	0	0	0	0	35493000	23683000	11811000	0	0	0	51154	4897	48164	309320	416245	416245			1	
TLTYPLDLFK	1	Unmodified	1209.6645	0.66452593	4847	Q9HC21	SLC25A19	Mitochondrial thiamine pyrophosphate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.54		4						4	2	2	2	3	3	91.384	85.185	2	5.8885E-06	42237	160513_QHF_FH_JSI12Kac_6	113.62	84.535			0.98471	0.99023	21.009	10	0	Median	1.241	1.0184	30.287	2	0	Median	0.81809	0.98073	42.422	2	0	Median	0.98839	0.92621	21.159	3	0	Median	0.96743	1.0154	9.9927	3	0	Median	472230000	230090000	242140000	13716000	6693500	7022900	25776000	13919000	11857000	198520000	85961000	112560000	234220000	123510000	110700000	51155	4847	48165	309321;309322;309323;309324;309325;309326;309327;309328;309329;309330	416246;416247;416248;416249;416250;416251;416252;416253;416254;416255;416256;416257;416258;416259;416260;416261;416262;416263	416263			18	
TLTYPLDLFKK	2	Unmodified	1337.7595	0.75948895	4847	Q9HC21	SLC25A19	Mitochondrial thiamine pyrophosphate carrier	yes	yes	0	0	0	1				By MS/MS	16	0									1				1	81.962	72.519	3	1.0418E-05	38447	160513_QHF_FH_JSI12Kac_6	98.156	78.06			1.2574	1.3607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2574	1.3607	NaN	1	0	Median	27287000	13664000	13624000	0	0	0	0	0	0	0	0	0	27287000	13664000	13624000	51156	4847	48166	309331	416264;416265	416264			2	
TLVAGTIWNLK	1	Unmodified	1214.7023	0.70230842	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.67		2	3						4	3	2	2	2	79.574	75.417	2	1.3844E-13	67830	160511_QHF_FH_JSI12i_3	153.05	95.868			1.1887	1.0649	14.324	9	2	Median	1.3209	1.1447	9.7706	3	1	Median	0.78107	0.93346	4.6255	2	0	Median	1.2631	1.1977	9.416	2	0	Median	0.9149	0.93559	18.305	2	1	Median	562010000	282440000	279570000	130620000	61561000	69057000	148040000	82002000	66041000	96667000	39658000	57009000	186680000	99215000	87467000	51157	3274	48167	309332;309333;309334;309335;309336;309337;309338;309339;309340	416266;416267;416268;416269;416270;416271;416272;416273;416274;416275;416276	416274			11	
TLVAHYPPVQVLFEK	1	Unmodified	1739.961	0.9610423	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	2	3	3	82.154	81.507	2;3	9.6517E-06	72305	160511_QHF_FH_JSI9i_2	81.632	64.947			0.84053	0.90259	36.03	7	5	Median	0.85037	0.72623	NaN	1	1	Median	1.0076	1.1356	32.482	2	1	Median	1.0594	1.0065	69.277	2	1	Median	0.79076	0.83906	14.272	2	2	Median	895960000	488910000	407050000	49316000	20944000	28371000	87455000	48846000	38609000	334570000	173440000	161130000	424630000	245690000	178940000	51158	1778	48168	309341;309342;309343;309344;309345;309346;309347;309348;309349;309350	416277;416278;416279;416280;416281;416282;416283;416284;416285;416286;416287;416288;416289;416290;416291;416292	416286			16	
TLVDIAK	1	Unmodified	758.4538	0.45380487	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.83	4	4	3				3	2		4	4	5	3	39.72	35.939	2	0.0055967	32111	160511_QHF_FH_JSI10i_1	94.262	11.999			1.0567	1.0037	18.458	16	1	Median	1.2057	1.0287	18.618	4	0	Median	0.73437	0.88833	8.6804	4	0	Median	1.1658	1.1348	18.962	5	1	Median	1.1766	1.2596	18.178	3	0	Plateau	7028200000	3270700000	3757500000	1336600000	551690000	784860000	1760400000	890610000	869760000	2342800000	1110200000	1232600000	1588500000	718210000	870250000	51159	4321	48169	309351;309352;309353;309354;309355;309356;309357;309358;309359;309360;309361;309362;309363;309364;309365;309366	416293;416294;416295;416296;416297;416298;416299;416300;416301;416302;416303;416304;416305;416306;416307;416308;416309;416310;416311;416312;416313;416314;416315;416316;416317;416318;416319;416320;416321;416322	416308			30	
TLVDPENMLATANK	1	Unmodified	1515.7603	0.76029359	3059	Q6IN85	SMEK1	Serine/threonine-protein phosphatase 4 regulatory subunit 3A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	72.139	71.677	2	3.4667E-07	64862	160511_QHF_FH_JSI10i_1	89.548	61.806			0.72516	0.73554	11.358	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71005	0.67877	NaN	1	1	Median	0.7406	0.79705	NaN	1	0	Median	69072000	38633000	30439000	0	0	0	0	0	0	32485000	18744000	13741000	36587000	19889000	16698000	51160	3059	48170	309367;309368;309369;309370	416323;416324;416325;416326	416326			4	
TLVECWK	1	Unmodified	934.45824	0.45823833	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.804	40.433	2	0.053362	34592	160511_QHF_FH_JSI12i_2	47.067	36.194			1.2367	1.383	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2367	1.383	NaN	1	1	Median	70691000	35055000	35636000	0	0	0	0	0	0	0	0	0	70691000	35055000	35636000	51161	2094	48171	309371	416327	416327			1	
TLVEDLFADK	1	Unmodified	1149.5918	0.59175492	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	4.86	5	4					2			2	4	2	3	73.649	71.982	2	1.3285E-05	64270	160511_QHF_FH_JSI10i_2	102.06	62.017			0.84269	0.93186	50.251	10	5	Median	0.68647	0.57631	75.325	2	1	Median	0.82296	1.0064	29.159	3	2	Median	1.4812	1.4595	65.213	2	0	Median	0.81842	0.83689	22.741	3	2	Median	878250000	489680000	388570000	166750000	98780000	67969000	205660000	123190000	82469000	202130000	99553000	102580000	303720000	168160000	135560000	51162	552	48172	309372;309373;309374;309375;309376;309377;309378;309379;309380;309381;309382	416328;416329;416330;416331;416332;416333;416334;416335;416336;416337;416338;416339;416340;416341;416342;416343;416344	416343			17	
TLVFEQR	0	Unmodified	891.48142	0.48141661	5570	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	36.192	35.249	2	0.0054888	30911	160511_QHF_FH_JSI10i_2	94.662	50.268			1.0542	1.0448	14.028	4	1	Median	1.1803	1.0234	NaN	1	0	Median	0.85254	1.0666	NaN	1	0	Median	0.94156	0.94241	NaN	1	0	Median	1.1804	1.3106	NaN	1	1	Median	395810000	203770000	192030000	78837000	35140000	43697000	97750000	60939000	36811000	119560000	58088000	61469000	99662000	49605000	50056000	51163	5570	48173	309383;309384;309385;309386	416345;416346;416347;416348	416348			4	
TLVFEQRK	1	Unmodified	1019.5764	0.57637963	5570	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			25.339	24.064	3	0.060581	19916	160511_QHF_FH_JSI10i_3	20.87	11.656			1.9567	2.3032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9567	2.3032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16320000	6245100	10075000	0	0	0	16320000	6245100	10075000	0	0	0	0	0	0	51164	5570	48174	309387	416349	416349			1	
TLVGSGVEELPSNILLVR	0	Unmodified	1895.0728	0.072777598	3286	Q7Z6J0	SH3RF1	E3 ubiquitin-protein ligase SH3RF1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	99.002	98.833	2	4.7807E-16	85116	160511_QHF_FH_JSI12i_2	156.8	133.42			1.2364	1.0825	23.069	3	2	Median	1.2364	1.0825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.468	1.4285	NaN	1	1	Median	0.84083	0.90364	NaN	1	0	Median	22127000	7580100	14547000	5714700	1194600	4520100	0	0	0	8525700	2223500	6302300	7886600	4162000	3724500	51165	3286	48175	309388;309389;309390	416350;416351;416352;416353	416350			4	
TLVGVGASLGLR	0	Unmodified	1141.6819	0.68190733	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				68.177	66.687	2	0.00049034	54784	160511_QHF_FH_JSI9i_3	70.1	34.589			1.1094	0.89775	NaN	1	0	Median	1.1094	0.89775	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18364000	8554300	9809400	18364000	8554300	9809400	0	0	0	0	0	0	0	0	0	51166	1167	48176	309391	416354;416355	416355			2	
TLVLLDNLNVR	0	Unmodified	1268.7452	0.74523587	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.44	2	4	4					1	4	3	4	5	3	83.271	79.958	2	3.5833E-18	71935	160511_QHF_FH_JSI12i_3	162.88	98.165			1.0792	1.0566	28.754	15	2	Median	1.3444	1.146	42.376	3	1	Median	0.78393	0.9386	18.916	4	0	Median	1.0874	1.0549	27.996	5	1	Median	1.0792	1.1676	17.744	3	0	Median	1447000000	677650000	769350000	245510000	104530000	140990000	365830000	188560000	177280000	458590000	217840000	240740000	377060000	166720000	210340000	51167	1486	48177	309392;309393;309394;309395;309396;309397;309398;309399;309400;309401;309402;309403;309404;309405;309406	416356;416357;416358;416359;416360;416361;416362;416363;416364;416365;416366;416367;416368;416369;416370;416371;416372;416373;416374;416375;416376;416377;416378;416379;416380;416381	416377			26	
TLVLLGAHGVGR	0	Unmodified	1191.7088	0.70879078	221	O14936	CASK	Peripheral plasma membrane protein CASK	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	16	0									3	1	1		1	60.645	51.507	3	0.0093572	27376	160513_QHF_FH_JSI9Kac_6	36.284	20.031			1.0632	1.2602	35.708	3	0	Plateau	1.2609	1.0757	NaN	1	0	Median	1.0632	1.2602	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8932	2.128	NaN	1	0	Median	29011000	15478000	13533000	7918100	3748100	4169900	18224000	10897000	7326400	0	0	0	2869700	832820	2036900	51168	221	48178	309407;309408;309409	416382	416382			1	
TLVLLMGK	1	Oxidation (M)	889.53067	0.53067499	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.29	2	5	4			3	7	14	19	16	18	12	8	61.019	52.807	2	0.00021054	28394	160513_QHF_FH_JSI11Kac_6	117.17	57.56			0.94988	0.94257	46.597	48	8	Median	1.0085	0.89886	37.912	16	2	Median	0.92403	0.9966	49.669	15	3	Median	0.9886	0.93716	39.761	9	1	Median	0.81481	0.88844	67.101	8	2	Median	18415000000	9079700000	9335000000	5409400000	2263100000	3146400000	4380700000	2259700000	2121000000	4888800000	2568000000	2320800000	3735800000	1988900000	1746800000	51169	876	48179	309410;309411;309412;309413;309414;309415;309416;309417;309418;309419;309420;309421;309422;309423;309424;309425;309426;309427;309428;309429;309430;309431;309432;309433;309434;309435;309436;309437;309438;309439;309440;309441;309442;309443;309444;309445;309446;309447;309448;309449;309450;309451;309452;309453;309454;309455;309456;309457;309458;309459;309460;309461;309462;309463	416383;416384;416385;416386;416387;416388;416389;416390;416391;416392;416393;416394;416395;416396;416397;416398;416399;416400;416401;416402;416403;416404;416405;416406;416407;416408;416409;416410;416411;416412;416413;416414;416415;416416;416417;416418;416419;416420;416421;416422;416423;416424;416425;416426;416427;416428;416429;416430;416431;416432;416433;416434;416435;416436;416437;416438;416439;416440;416441;416442;416443;416444;416445;416446;416447;416448;416449;416450;416451;416452;416453;416454;416455;416456;416457;416458;416459;416460;416461;416462;416463;416464;416465;416466;416467;416468;416469;416470;416471;416472;416473;416474;416475	416409		424	92	
TLVLLMGK	1	Unmodified	873.53576	0.53576037	876	P07737;CON__P02584	PFN1	Profilin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.71	6.01	3	8	6	3		4	5	5	4	8	12	9	9	66.981	61.236	1;2	0.00026558	34245	160513_QHF_FH_JSI9Kac_5	117.17	78.931			1.0342	1.0139	46.228	37	3	Median	1.1037	0.93278	19.17	8	0	Median	0.84538	1.0404	72.683	11	2	Median	1.0462	1.0139	6.9507	9	0	Median	1.0604	1.0881	48.357	9	1	Median	114460000000	51693000000	62770000000	25590000000	10105000000	15485000000	32292000000	17530000000	14761000000	30004000000	13493000000	16511000000	26578000000	10565000000	16012000000	51170	876	48179	309464;309465;309466;309467;309468;309469;309470;309471;309472;309473;309474;309475;309476;309477;309478;309479;309480;309481;309482;309483;309484;309485;309486;309487;309488;309489;309490;309491;309492;309493;309494;309495;309496;309497;309498;309499;309500;309501	416476;416477;416478;416479;416480;416481;416482;416483;416484;416485;416486;416487;416488;416489;416490;416491;416492;416493;416494;416495;416496;416497;416498;416499;416500;416501;416502;416503;416504;416505;416506;416507;416508;416509;416510;416511;416512;416513;416514;416515;416516;416517;416518;416519;416520;416521;416522;416523;416524;416525;416526;416527;416528;416529;416530;416531;416532;416533;416534;416535;416536;416537;416538;416539;416540;416541;416542;416543;416544;416545;416546;416547;416548;416549;416550;416551;416552;416553;416554;416555;416556;416557;416558	416498			82	
TLVLSDKHSPQK	2	Acetyl (K)	1393.7565	0.75652884	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.634							2	9	5	3	6	3	4	39.928	30.254	2;3	4.1186E-13	16852	160513_QHF_FH_JSI9Kac_5	129.76	92.78			0.88175	0.93803	113.72	13	3	Median	1.3776	1.1394	17.545	3	0	Median	0.77766	0.92216	199.38	4	2	Median	0.80056	0.79512	110.76	3	1	Median	0.88175	0.96752	3.2873	3	0	Median	243380000	121910000	121470000	53126000	26771000	26355000	70695000	39694000	31001000	39699000	9143100	30556000	79858000	46303000	33555000	51171	3647	48180	309502;309503;309504;309505;309506;309507;309508;309509;309510;309511;309512;309513;309514;309515;309516;309517	416559;416560;416561;416562;416563;416564;416565;416566;416567;416568;416569;416570;416571;416572;416573;416574;416575;416576;416577;416578	416560	2903;2904		20	
TLVLSDKHSPQKK	3	2 Acetyl (K)	1563.8621	0.86205654	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.707							4	8	4	3	4	4	5	45.557	35.594	2;3	3.3796E-25	18369	160513_QHF_FH_JSI10Kac_5	158.81	144.46			0.95383	1.0188	10.113	16	0	Median	1.2696	1.0545	7.6537	3	0	Median	0.9261	1.1125	7.3106	4	0	Median	0.98407	0.96362	3.4024	4	0	Median	0.84611	0.9353	8.5605	5	0	Median	655270000	359470000	295790000	97400000	44587000	52813000	173840000	89557000	84287000	234730000	146920000	87810000	149300000	78414000	70883000	51172	3647	48181	309518;309519;309520;309521;309522;309523;309524;309525;309526;309527;309528;309529;309530;309531;309532;309533	416579;416580;416581;416582;416583;416584;416585;416586;416587;416588;416589;416590;416591;416592;416593;416594;416595;416596;416597;416598;416599;416600;416601;416602;416603;416604;416605;416606	416598	2903;2904		28	
TLVLSDKHSPQKK	3	Acetyl (K)	1521.8515	0.85149185	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	32.127	23.415	3;4	5.0165E-08	12559	160513_QHF_FH_JSI12Kac_6	106.17	93.792			0.83705	0.89514	3.8377	6	0	Median	0.97187	0.83985	NaN	1	0	Median	0.76593	0.89565	0.55052	2	0	Median	0.89311	0.86381	NaN	1	0	Median	0.83705	0.91861	3.1909	2	0	Median	80161000	42699000	37462000	9095400	4392600	4702800	39585000	21928000	17657000	8610600	3423300	5187300	22870000	12955000	9915300	51173	3647	48181	309534;309535;309536;309537;309538;309539	416607;416608;416609;416610;416611	416608	2903;2904		5	
TLVLSNLSYSATEETLQEVFEK	1	Unmodified	2500.2585	0.2584657	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.81	5.47	3	8	6						4	4	5	6	6	100.91	99.241	2;3	0	91032	160511_QHF_FH_JSI11i_3	506.47	480.11			0.96538	0.91006	12.723	21	1	Median	1.0745	0.89943	4.6936	4	0	Median	0.7266	0.83285	7.1428	5	1	Median	1.0483	1.0071	13.771	6	0	Median	0.9355	0.98065	11.482	6	0	Median	17375000000	8706000000	8668700000	3015800000	1464200000	1551600000	2225100000	1360200000	864820000	6437400000	3029100000	3408300000	5696400000	2852400000	2844000000	51174	1154	48182	309540;309541;309542;309543;309544;309545;309546;309547;309548;309549;309550;309551;309552;309553;309554;309555;309556;309557;309558;309559;309560	416612;416613;416614;416615;416616;416617;416618;416619;416620;416621;416622;416623;416624;416625;416626;416627;416628;416629;416630;416631;416632;416633;416634;416635;416636;416637;416638;416639;416640;416641;416642;416643;416644;416645;416646;416647	416613			35	
TLVMNKHVGHLLR	1	Acetyl (K)	1558.8766	0.87660117	1629	P48637	GSS	Glutathione synthetase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		60.621	50.907	3	0.01902	27582	160513_QHF_FH_JSI11Kac_6	40.725	28.559			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51175	1629	48183	309561	416648	416648	1642		1	
TLVNPANVTFK	1	Unmodified	1202.6659	0.66592292	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.6	6.33	4	4	3				4	5		4	7	4	5	65.341	59.99	2	6.3246E-13	51839	160511_QHF_FH_JSI11i_2	144.65	96.802			0.95065	1.0219	60.243	20	10	Median	0.95065	0.80553	31.618	4	1	Median	0.82694	1.0213	94.704	7	4	Median	1.0598	1.0648	21.714	4	2	Median	1.1334	1.1874	42.277	5	3	Median	2309800000	1087100000	1222700000	381360000	178780000	202580000	646870000	308190000	338690000	761660000	350540000	411120000	519910000	249640000	270270000	51176	548	48184	309562;309563;309564;309565;309566;309567;309568;309569;309570;309571;309572;309573;309574;309575;309576;309577;309578;309579;309580;309581	416649;416650;416651;416652;416653;416654;416655;416656;416657;416658;416659;416660;416661;416662;416663;416664;416665;416666;416667;416668;416669;416670;416671;416672;416673;416674;416675;416676;416677	416668			28	
TLVPELIK	1	Unmodified	911.56917	0.56916898	1200	P22033	MUT	Methylmalonyl-CoA mutase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	64.136	63.325	2	0.0055642	54489	160511_QHF_FH_JSI12i_2	65.252	33.963			0.96871	0.92836	14.345	5	0	Median	0.96871	0.8536	NaN	1	0	Median	0.76356	0.92836	NaN	1	0	Median	0.93614	0.91517	17.102	2	0	Median	1.006	1.1554	NaN	1	0	Median	182110000	94614000	87496000	27533000	11489000	16044000	36558000	19391000	17167000	70361000	40677000	29684000	47658000	23057000	24601000	51177	1200	48185	309582;309583;309584;309585;309586	416678;416679;416680	416679			3	
TLVPGPPGSSRPVK	1	Unmodified	1390.7932	0.79324869	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			33.368	31.959	3	0.00079138	26689	160511_QHF_FH_JSI10i_3	59.607	42.24			0.92493	0.89634	2.5265	2	0	Median	1.0848	0.88047	NaN	1	0	Median	0.78858	0.9125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153740000	78594000	75144000	78240000	36586000	41654000	75498000	42008000	33490000	0	0	0	0	0	0	51178	2528	48186	309587;309588	416681;416682;416683	416682			3	
TLVQILTEPR	0	Unmodified	1168.6816	0.68157298	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	4.33	4.78		4	1					1		1	1	1	3	64.478	62.061	2	4.9343E-05	53444	160511_QHF_FH_JSI12i_2	93.096	70.356			0.84816	0.96294	32.309	6	2	Linear	1.1622	0.97347	NaN	1	0	Median	0.72454	0.904	NaN	1	0	Median	0.83129	0.83146	NaN	1	0	Median	1.0549	1.1047	36.088	3	2	Plateau	470010000	207680000	262330000	73959000	36154000	37805000	98162000	57328000	40834000	88298000	38675000	49624000	209590000	75526000	134070000	51179	598	48187	309589;309590;309591;309592;309593;309594	416684;416685;416686;416687	416685			4	
TLVQQLYTTLCIEQHQLNK	1	Unmodified	2329.21	0.21001614	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	87.405	87.339	3	8.1155E-14	75809	160511_QHF_FH_JSI12i_3	143.71	135.62			0.63133	0.61608	71.54	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40556	0.37149	NaN	1	1	Median	0.9828	1.0217	NaN	1	0	Median	90108000	53094000	37014000	0	0	0	0	0	0	51580000	31888000	19692000	38528000	21206000	17322000	51180	3635	48188	309595;309596	416688;416689;416690;416691;416692	416691			5	
TLVSEGMLTSLR	0	Unmodified	1305.6962	0.69623677	3816	Q8WY36	BBX	HMG box transcription factor BBX	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	71.919	70.627	2	0.0063429	60910	160511_QHF_FH_JSI12i_2	52.79	27.404			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51181	3816	48189	309597	416693	416693			1	
TLVSTVGSMVFNEGEAQR	0	Unmodified	1923.936	0.93602612	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.685	1	3	5							1	3	3	2	75.293	74.895	2;3	5.3885E-66	65197	160511_QHF_FH_JSI12i_3	226.59	218.18			1.1923	1.2877	17.477	8	4	Median	2.226	1.9244	NaN	1	1	Median	1.0788	1.2892	5.1329	2	2	Median	1.1855	1.1087	11.795	3	1	Plateau	1.1014	1.2471	9.5108	2	0	Median	492240000	229650000	262590000	41616000	9736900	31879000	93293000	48954000	44339000	214030000	104120000	109910000	143300000	66840000	76463000	51182	5213	48190	309598;309599;309600;309601;309602;309603;309604;309605;309606	416694;416695;416696;416697;416698;416699;416700;416701;416702;416703;416704;416705	416705			12	
TLVSVTK	1	Unmodified	746.4538	0.45380487	880;2872	P07900;Q58FG1	HSP90AA1;HSP90AA4P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.31	5	7	6			2	2	1	1	7	5	6	6	26.491	23.417	1;2	0.0037157	19871	160511_QHF_FH_JSI9i_3	102.71	62.61			1.297	1.0996	68.993	24	11	Median	1.3835	1.1225	47.469	7	2	Median	0.75648	0.90886	103.78	5	1	Median	1.4768	1.4009	78.618	6	5	Median	1.1273	1.2042	54.014	6	3	Median	34651000000	17265000000	17386000000	7205200000	3195100000	4010000000	6705400000	4243100000	2462400000	13392000000	6079000000	7313300000	7347700000	3747400000	3600300000	51183	880;2872	48191	309607;309608;309609;309610;309611;309612;309613;309614;309615;309616;309617;309618;309619;309620;309621;309622;309623;309624;309625;309626;309627;309628;309629;309630	416706;416707;416708;416709;416710;416711;416712;416713;416714;416715;416716;416717;416718;416719;416720;416721;416722;416723;416724;416725;416726;416727;416728;416729;416730;416731;416732;416733;416734;416735;416736;416737;416738;416739;416740;416741	416722			36	
TLVTQNSGVEALIHAILR	0	Unmodified	1934.0949	0.094910023	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	2	1	1	1	98.15	92.512	3	9.6197E-118	84324	160511_QHF_FH_JSI10i_3	273.32	216			1.1588	1.028	11.711	5	0	Median	1.1903	0.98439	5.551	2	0	Median	0.88883	1.0378	NaN	1	0	Median	1.3272	1.2929	NaN	1	0	Median	0.96256	1.028	NaN	1	0	Median	698660000	339120000	359540000	272940000	130560000	142380000	242140000	132730000	109400000	86778000	28476000	58302000	96813000	47353000	49460000	51184	1065	48192	309631;309632;309633;309634;309635	416742;416743;416744	416742			3	
TLVVHEK	1	Unmodified	824.4756	0.47560295	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	12.287	9.4775	2	0.0086222	7612	160511_QHF_FH_JSI12i_3	82.671	63.311			0.91127	0.92155	18.479	12	0	Median	1.2051	0.99105	13.376	3	0	Median	0.83701	1.0028	8.8323	3	0	Median	0.8741	0.85333	7.9862	3	0	Plateau	0.85526	0.9151	36.016	3	0	Median	11231000000	5222900000	6008100000	1625500000	797970000	827500000	1839000000	966760000	872260000	4041100000	1861300000	2179800000	3725400000	1596900000	2128600000	51185	769	48193	309636;309637;309638;309639;309640;309641;309642;309643;309644;309645;309646;309647	416745;416746;416747;416748;416749;416750;416751;416752;416753;416754;416755;416756;416757;416758;416759;416760	416757			16	
TLVVHEKADDLGK	2	Acetyl (K)	1465.7777	0.77765821	769	P00441	SOD1	Superoxide dismutase [Cu-Zn]	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.542							4	10	1	2	4	3	6	49.725	39.329	2;3	9.4712E-32	21889	160513_QHF_FH_JSI11Kac_5	183.79	147.09			0.92817	1.033	94.674	11	1	Median	1.4092	1.1682	17.399	2	0	Median	0.94062	1.1231	10.037	4	0	Median	0.29732	0.29367	0.37529	2	0	Median	0.56685	0.62812	160.97	3	1	Plateau	202930000	124570000	78363000	12625000	5618000	7006500	64049000	30743000	33306000	101560000	76755000	24801000	24703000	11454000	13249000	51186	769	48194	309648;309649;309650;309651;309652;309653;309654;309655;309656;309657;309658;309659;309660;309661;309662	416761;416762;416763;416764;416765;416766;416767;416768;416769;416770;416771;416772;416773;416774;416775;416776;416777;416778;416779;416780;416781;416782;416783;416784	416774	377		23	
TLWIWECGITAK	1	Unmodified	1476.7435	0.74352131	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.42		6	4						5	2	4	4	5	90.219	86.67	2	2.7429E-13	44660	160513_QHF_FH_JSI10Kac_6	132.55	102.75			0.86296	0.98771	31.114	13	10	Median	1.2029	1.0337	2.6125	2	2	Median	0.77509	0.93059	31.126	3	2	Plateau	0.81539	0.77473	23.633	4	3	Median	1.0577	1.1557	37.024	4	3	Median	811900000	413260000	398640000	89676000	38716000	50960000	194740000	110370000	84370000	255320000	132810000	122520000	272160000	131370000	140800000	51187	1029	48195	309663;309664;309665;309666;309667;309668;309669;309670;309671;309672;309673;309674;309675;309676;309677	416785;416786;416787;416788;416789;416790;416791;416792;416793;416794;416795;416796;416797;416798;416799;416800;416801;416802;416803;416804	416804			20	
TLWNGQK	1	Unmodified	845.43955	0.43955179	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	3	1	22.981	22.461	2	0.0062019	18345	160511_QHF_FH_JSI12i_3	92.692	74.028			1.2079	1.292	90.26	6	4	Median	1.0746	0.91832	NaN	1	1	Median	0.85715	1.0412	56.844	2	1	Median	2.8734	2.6948	130.28	2	1	Median	3.9973	4.1013	NaN	1	1	Median	1475100000	653800000	821280000	194430000	101090000	93342000	363400000	218510000	144890000	527690000	181880000	345810000	389550000	152310000	237240000	51188	2169	48196	309678;309679;309680;309681;309682;309683;309684	416805;416806;416807;416808;416809;416810	416810			6	
TLWNQELYIQQDNSERK	1	Unmodified	2164.0549	0.054895702	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.43	0.495		4	3							1	4	2		58.741	58.029	3	1.4423E-08	51397	160511_QHF_FH_JSI11i_3	130.39	104.25			0.85558	0.76767	59.776	6	2	Median	0.92897	0.79805	NaN	1	0	Median	1.1798	1.3452	92.496	3	0	Median	0.7504	0.69693	8.1829	2	2	Median	NaN	NaN	NaN	0	0	Median	473410000	250200000	223210000	80023000	39547000	40476000	137070000	79595000	57474000	256310000	131060000	125260000	0	0	0	51189	3906	48197	309685;309686;309687;309688;309689;309690;309691	416811;416812;416813;416814;416815;416816;416817;416818;416819;416820	416811			8	
TLWSLVAFPK	1	Unmodified	1160.6594	0.65938097	3924	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	94.554	94.083	2	0.0007536	81305	160511_QHF_FH_JSI12i_3	78.934	65.355			1.0104	0.97939	7.0127	4	0	Median	1.1212	0.93328	NaN	1	0	Median	0.92078	1.0278	NaN	1	0	Median	1.0031	0.9267	NaN	1	0	Median	1.0177	1.0665	NaN	1	0	Median	187950000	93657000	94295000	33356000	13548000	19808000	30764000	16611000	14153000	49168000	27423000	21745000	74664000	36074000	38590000	51190	3924	48198	309692;309693;309694;309695	416821;416822;416823;416824	416824			4	
TLWTVLDAIDQMWLPVVR	0	Oxidation (M)	2171.1449	0.14489668	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.25			4						7	2	2	3	4	100.67	95.396	2;3	6.1124E-190	51932	160513_QHF_FH_JSI9Kac_6	303.02	249.49			1.001	1.0108	13.622	11	2	Median	1.1626	0.99396	24.328	2	1	Median	0.87758	1.0441	7.5627	2	0	Median	0.98393	0.92747	7.1471	3	1	Median	1.0391	1.1003	10.045	4	0	Median	1532200000	761730000	770430000	212120000	88492000	123620000	378890000	216190000	162690000	186600000	98582000	88015000	754570000	358460000	396100000	51191	1144	48199	309696;309697;309698;309699;309700;309701;309702;309703;309704;309705;309706	416825;416826;416827;416828;416829;416830;416831;416832;416833;416834;416835;416836;416837;416838;416839	416831		783	15	
TLWTVLDAIDQMWLPVVR	0	Unmodified	2155.15	0.14998206	1144	P18669;Q8N0Y7	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		3	3						6	2	2	6	2	102.81	98.346	2;3	0	53056	160513_QHF_FH_JSI11Kac_6	392.81	346.22			0.94019	0.96269	22.435	11	1	Median	1.2567	1.0822	19.783	2	0	Median	0.95035	1.1297	10.973	2	0	Median	0.89387	0.84361	24.255	5	1	Median	0.95991	1.0413	21.685	2	0	Median	5208200000	2441300000	2766900000	877890000	369710000	508170000	4146300000	1973200000	2173100000	147730000	77549000	70183000	36333000	20886000	15447000	51192	1144	48199	309707;309708;309709;309710;309711;309712;309713;309714;309715;309716;309717;309718	416840;416841;416842;416843;416844;416845;416846;416847;416848;416849;416850;416851;416852;416853;416854;416855;416856;416857	416843			18	
TLYDESCSK	1	Unmodified	1101.4648	0.46483985	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.859	15.414	2	0.037395	13124	160511_QHF_FH_JSI12i_1	38.567	27.346			0.49973	0.51421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49973	0.51421	NaN	1	0	Median	34502000	22802000	11700000	0	0	0	0	0	0	0	0	0	34502000	22802000	11700000	51193	3950	48200	309719	416858;416859	416858			2	
TLYDFPGNDAEDLPFK	1	Unmodified	1840.8519	0.85194536	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	4	1	2	87.997	87.479	2	3.1402E-41	79310	160511_QHF_FH_JSI10i_1	210.93	179.29			1.0978	1.066	19.087	8	4	Median	1.2009	0.98818	30.186	3	2	Median	0.93791	1.1145	9.4582	2	1	Median	1.1086	1.0902	NaN	1	0	Median	1.1012	1.1628	24.396	2	1	Median	487770000	234540000	253240000	111590000	43710000	67876000	133410000	77110000	56303000	117440000	55350000	62092000	125330000	58367000	66966000	51194	1583	48201	309720;309721;309722;309723;309724;309725;309726;309727;309728;309729	416860;416861;416862;416863;416864;416865;416866;416867;416868;416869;416870;416871;416872;416873;416874	416865			15	
TLYDFPGNDAEDLPFKK	2	Unmodified	1968.9469	0.94690838	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		76.662	75.975	3	0.0017022	67645	160511_QHF_FH_JSI10i_2	44.998	35.952			0.72497	0.79888	17.771	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57655	0.70455	NaN	1	0	Median	0.9116	0.90585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65158000	39328000	25830000	0	0	0	32477000	18872000	13605000	32681000	20457000	12225000	0	0	0	51195	1583	48202	309730;309731	416875;416876	416876			2	
TLYFFIAGR	0	Unmodified	1086.5862	0.58621603	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	82.979	73.851	2	5.4139E-05	40787	160513_QHF_FH_JSI11Kac_6	120.46	76.062			1.3167	1.2357	36.152	3	0	Median	0.85412	0.72661	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3167	1.2357	NaN	1	0	Median	1.3731	1.4494	NaN	1	0	Median	248430000	116350000	132080000	93750000	52767000	40983000	0	0	0	76813000	31651000	45163000	77866000	31929000	45937000	51196	1042	48203	309732;309733;309734	416877;416878;416879;416880;416881	416879			5	
TLYFLPR	0	Unmodified	908.51199	0.51198846	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.33	0.471		4	2							2	2	1	1	66.428	65.371	2	0.0083149	53440	160511_QHF_FH_JSI9i_3	86.512	59.392			0.68809	0.72029	70.406	5	2	Median	0.49012	0.41339	121.79	2	1	Median	0.49197	0.57823	51.662	2	1	Median	0.72583	0.72029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	348290000	238840000	109450000	140740000	100990000	39750000	163940000	113090000	50850000	43614000	24762000	18851000	0	0	0	51197	940	48204	309735;309736;309737;309738;309739;309740	416882;416883;416884;416885;416886;416887;416888	416884			7	
TLYGFGG	0	Unmodified	713.33844	0.33844077	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13.3	0.471						2	1				1	2		64.671	54.622	1	0.013363	30076	160513_QHF_FH_JSI11Kac_4	69.39	69.39			1.0629	1.0348	33.726	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.5849	1.8745	NaN	1	0	Median	1.0561	1.0455	1.4497	2	0	Median	NaN	NaN	NaN	0	0	Median	11983000	5443400	6539400	0	0	0	3884500	1769800	2114700	8098300	3673500	4424700	0	0	0	51198	2019	48205	309741;309742;309743	416889;416890	416889			2	
TLYHSVHEK	1	Unmodified	1112.5615	0.56145784	706	O95571	ETHE1	Persulfide dioxygenase ETHE1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	8.0678	8.1166	3	0.0001936	5545	160511_QHF_FH_JSI12i_3	73.499	60.923			1.0109	0.97945	36.679	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81654	0.75569	NaN	1	0	Median	1.2515	1.2695	NaN	1	0	Median	254210000	125530000	128670000	0	0	0	0	0	0	87010000	49588000	37422000	167200000	75947000	91252000	51199	706	48206	309744;309745	416891;416892	416892			2	
TLYLAQDEDSEK	1	Unmodified	1410.6515	0.65145464	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10	5.2	1					3				1		1	2	42.963	37.884	2	0.00042212	33408	160511_QHF_FH_JSI9i_1	87.667	76.88			1.1663	1.0827	28.464	2	2	Median	1.0812	0.88529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2581	1.3241	NaN	1	1	Median	139550000	73327000	66219000	138080000	72717000	65366000	0	0	0	0	0	0	1463400	610320	853060	51200	714	48207	309746;309747;309748;309749	416893;416894;416895;416896	416894			4	
TLYLFNWIWR	0	Unmodified	1410.7448	0.74484194	1244	P24390	KDELR1	ER lumen protein-retaining receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.362	88.943	2	6.1239E-09	50477	160513_QHF_FH_JSI9Kac_6	124.23	85.938			0.66448	0.66317	15.468	4	3	Median	0.77464	0.65118	NaN	1	1	Median	0.56294	0.67538	NaN	1	0	Median	0.90894	0.85824	NaN	1	1	Median	0.56998	0.59825	NaN	1	1	Median	958640000	511540000	447100000	210010000	116330000	93685000	306540000	147280000	159260000	220630000	111770000	108860000	221460000	136160000	85296000	51201	1244	48208	309750;309751;309752;309753	416897;416898;416899;416900	416898			4	
TLYLLAPSFPDK	1	Unmodified	1363.7388	0.73875351	177	O14578	CIT	Citron Rho-interacting kinase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			87.888	87.357	2	0.00070045	77629	160511_QHF_FH_JSI10i_2	70.977	51.706			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51202	177	48209	309754	416901	416901			1	
TLYMSHR	0	Unmodified	906.43817	0.43817159	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			17.854	11.017	3	0.023446	7082	160513_QHF_FH_JSI10Kac_6	47.443	44.051			0.7702	0.91002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7702	0.91002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6076000	2978900	3097100	0	0	0	6076000	2978900	3097100	0	0	0	0	0	0	51203	4399	48210	309755	416902	416902			1	
TLYNNQPIDFLK	1	Unmodified	1464.7613	0.76127986	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	6.03	4	4						3		3	3	3	2	75.766	73.121	2	1.551E-31	64023	160511_QHF_FH_JSI12i_2	192.1	161.84			0.97278	0.9552	24.91	10	0	Median	1.1334	0.96939	44.529	3	0	Median	0.65984	0.79971	18.398	2	0	Median	0.99617	0.99058	3.662	3	0	Plateau	0.89796	0.96357	20.702	2	0	Median	845850000	449210000	396640000	151910000	76785000	75123000	206150000	128610000	77546000	289840000	139630000	150210000	197950000	104190000	93757000	51204	2475	48211	309756;309757;309758;309759;309760;309761;309762;309763;309764;309765;309766	416903;416904;416905;416906;416907;416908;416909;416910;416911;416912;416913;416914;416915;416916;416917;416918;416919;416920	416905			18	
TLYNNQPIDFLKK	2	Acetyl (K)	1634.8668	0.86680757	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.482	70.931	2	0.048468	37577	160513_QHF_FH_JSI11Kac_5	51.092	25.706			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1128400	1128400	0	0	0	0	0	0	0	1128400	1128400	0	0	0	0	51205	2475	48212	309767	416921	416921			1	
TLYNNQPIDFLKK	2	Unmodified	1592.8562	0.85624288	2475	Q13867	BLMH	Bleomycin hydrolase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.187	63.897	3	0.0095424	55150	160511_QHF_FH_JSI12i_3	38.839	27.569			1.1595	1.2096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1595	1.2096	NaN	1	0	Median	49089000	24831000	24258000	0	0	0	0	0	0	0	0	0	49089000	24831000	24258000	51206	2475	48212	309768	416922	416922			1	
TLYPQFMESVWWVFK	1	Unmodified	1959.9593	0.95932774	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	99.005	90.878	2;3	2.7617E-74	54530	160513_QHF_FH_JSI10Kac_6	223.22	202.75			1.2419	1.1804	16.42	9	3	Median	1.5938	1.3628	24.64	2	0	Median	1.1155	1.3186	17.715	3	2	Median	1.2269	1.1701	1.238	2	0	Median	1.177	1.2439	26.121	2	1	Median	4913300000	2376600000	2536700000	1261000000	606330000	654640000	2325600000	1124900000	1200700000	875220000	418680000	456540000	451570000	226750000	224820000	51207	1520	48213	309769;309770;309771;309772;309773;309774;309775;309776;309777	416923;416924;416925;416926;416927;416928;416929;416930;416931	416928			9	
TLYPQFMESVWWVFK	1	Oxidation (M)	1975.9542	0.95424237	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	96.352	88.865	2	2.4809E-24	47620	160513_QHF_FH_JSI12Kac_6	159.64	138.01			1.0233	1.0614	6.1245	4	2	Median	1.2232	1.04	NaN	1	0	Median	0.89727	1.0614	2.7738	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1276	1.1847	NaN	1	0	Median	460200000	215560000	244650000	123070000	44805000	78267000	230030000	121410000	108620000	0	0	0	107100000	49338000	57760000	51208	1520	48213	309778;309779;309780;309781	416932;416933;416934;416935;416936;416937	416934		1200	6	
TLYQLQAER	0	Unmodified	1120.5877	0.58767259	2813	Q3KQV9	UAP1L1	UDP-N-acetylhexosamine pyrophosphorylase-like protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.804	36.452	2	0.059841	31000	160511_QHF_FH_JSI12i_2	42.287	25.511			0.93338	1.008	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93338	1.008	NaN	1	1	Median	25739000	13690000	12049000	0	0	0	0	0	0	0	0	0	25739000	13690000	12049000	51209	2813	48214	309782	416938	416938			1	
TLYSEATSLFIK	1	Unmodified	1371.7286	0.72858275	2937	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	79.423	78.579	2	0.00021077	69016	160511_QHF_FH_JSI11i_2	95.483	68.969			1.0305	0.96808	53.07	3	3	Median	1.1164	0.96808	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0305	1.083	NaN	1	1	Median	0.35804	0.41048	NaN	1	1	Median	99638000	62087000	37551000	14573000	7735200	6837600	0	0	0	37686000	18624000	19062000	47379000	35728000	11652000	51210	2937	48215	309783;309784;309785	416939;416940;416941	416941			3	
TLYSFFSPSPAR	0	Unmodified	1371.6823	0.68230126	1025	P13051	UNG	Uracil-DNA glycosylase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.795	71.318	2	0.00364	58662	160511_QHF_FH_JSI9i_3	57.348	39.037			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51211	1025	48216	309786	416942	416942			1	
TLYTQIR	0	Unmodified	893.49707	0.49706667	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	30.181	29.439	2	0.0033324	24970	160511_QHF_FH_JSI12i_2	105.2	62.2			0.85972	1.0161	18.923	5	0	Median	1.2205	1.0376	NaN	1	0	Median	0.82262	1.0161	NaN	1	0	Median	0.69637	0.70495	NaN	1	0	Median	0.99719	1.052	14.791	2	0	Median	982090000	541420000	440660000	167640000	78755000	88881000	208700000	122670000	86028000	269450000	165600000	103850000	336300000	174390000	161910000	51212	2349	48217	309787;309788;309789;309790;309791	416943;416944;416945;416946;416947;416948	416944			6	
TLYVGNLSR	0	Unmodified	1021.5556	0.55564418	2163;1375	P31483;Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.07	6.45		4	4					3	3	4	4	4	2	46.73	41.981	2	0.0013529	35995	160511_QHF_FH_JSI12i_2	69.423	59.836			1.0093	1.0115	48.075	14	2	Median	1.251	1.0641	19.682	4	0	Median	0.85006	1.0049	34.26	4	1	Median	1.1178	1.0974	81.263	4	1	Median	0.94291	1.0115	0.54983	2	0	Median	1732200000	921790000	810380000	300500000	147980000	152520000	373540000	207580000	165960000	538100000	279950000	258140000	520030000	286280000	233760000	51213	1375;2163	48218	309792;309793;309794;309795;309796;309797;309798;309799;309800;309801;309802;309803;309804;309805	416949;416950;416951;416952;416953;416954;416955;416956;416957;416958;416959;416960;416961;416962;416963;416964;416965;416966;416967;416968	416950			19	
TLYVHWTDAGQLTPALLHSR	0	Unmodified	2278.1859	0.1858503	3459	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			79.993	74.352	3;4	7.0725E-08	40756	160513_QHF_FH_JSI10Kac_6	152.06	139.76			0.85823	1.0086	6.2299	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85823	1.0086	6.2299	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	390250000	235480000	154770000	0	0	0	390250000	235480000	154770000	0	0	0	0	0	0	51214	3459	48219	309806;309807	416969;416970	416970			2	
TMAAEVLSR	0	Unmodified	976.50117	0.50116577	3951	Q969V3	NCLN	Nicalin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	34.65	33.879	2	0.00016333	28774	160511_QHF_FH_JSI12i_2	88.181	54.384			1.0628	1.1749	9.6955	5	0	Median	1.345	1.1461	NaN	1	0	Median	1.0628	1.3223	NaN	1	0	Median	1.0515	1.0498	NaN	1	0	Median	1.1334	1.2409	7.7278	2	0	Median	723280000	327800000	395480000	147470000	62364000	85105000	214030000	109720000	104320000	154730000	57054000	97672000	207050000	98665000	108380000	51215	3951	48220	309808;309809;309810;309811;309812	416971;416972;416973;416974;416975;416976;416977	416972			7	
TMAALAK	1	Unmodified	704.3891	0.38909613	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				18.992	17.791	2	0.02319	14332	160511_QHF_FH_JSI9i_3	50.025	50.025			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51216	977	48221	309813	416978	416978			1	
TMADGNEK	1	Unmodified	864.36473	0.36473187	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		5.2803	4.9736	2	0.0003612	2837	160511_QHF_FH_JSI11i_1	110.81	83.687			0.8085	0.93758	0.22163	3	0	Plateau	1.136	0.93985	NaN	1	0	Median	0.8085	0.93758	NaN	1	0	Median	0.95941	0.9357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2419600000	1307700000	1111900000	552850000	286360000	266490000	1094600000	628350000	466280000	772100000	392990000	379110000	0	0	0	51217	2224	48222	309814;309815;309816	416979;416980;416981;416982;416983;416984	416979			6	
TMADSSYNLEVQNILSFLK	1	Unmodified	2172.0773	0.077270628	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.38	102.27	2	1.1675E-93	90053	160511_QHF_FH_JSI11i_2	290.71	268.94			1.0175	1.022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0175	1.022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132000000	73161000	58840000	0	0	0	0	0	0	132000000	73161000	58840000	0	0	0	51218	3965	48223	309817	416985	416985			1	
TMAGVSLPAPGVPAWAR	0	Unmodified	1679.8817	0.88174613	2744	Q16626	MEA1	Male-enhanced antigen 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	1	3	3	86.48	85.902	2	7.7257E-08	74165	160511_QHF_FH_JSI12i_2	100.55	83.922			0.67394	0.80336	20.026	3	2	Plateau	0.67449	0.57892	NaN	1	1	Median	0.67394	0.80336	NaN	1	0	Median	0.87017	0.83256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51821000	29957000	21864000	23167000	13968000	9200000	18065000	10596000	7468900	10589000	5393400	5195200	0	0	0	51219	2744	48224	309818;309819;309820;309821;309822;309823;309824;309825;309826	416986;416987;416988;416989;416990;416991;416992;416993;416994;416995;416996	416989			11	
TMAITPR	0	Unmodified	788.42146	0.42145889	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	21.661	20.879	2	0.0083292	17952	160511_QHF_FH_JSI10i_2	86.472	45.786			1.3689	1.527	74.982	3	3	Median	NaN	NaN	NaN	0	0	Median	0.63472	0.77766	NaN	1	1	Median	3.3902	3.4755	NaN	1	1	Median	1.3689	1.527	NaN	1	1	Median	827710000	210280000	617430000	0	0	0	130200000	76825000	53380000	527700000	74525000	453170000	169800000	58929000	110880000	51220	2517	48225	309827;309828;309829	416997;416998;416999	416999			3	
TMAQHEELMK	1	Unmodified	1216.558	0.55802872	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	3	1	18.619	18.072	2;3	3.075E-06	14719	160511_QHF_FH_JSI11i_2	135.43	87.854			0.6888	0.69341	48.477	5	4	Median	NaN	NaN	NaN	0	0	Median	0.26043	0.31428	NaN	1	1	Median	0.6888	0.69341	26.767	3	2	Median	0.89369	1.0207	NaN	1	1	Median	411180000	205620000	205560000	0	0	0	43065000	34353000	8712200	332300000	152510000	179800000	35810000	18764000	17046000	51221	1016	48226	309830;309831;309832;309833;309834	417000;417001;417002;417003;417004	417003			5	
TMATMGDTLASR	0	Unmodified	1253.5744	0.57440707	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	38.709	37.784	2	9.8457E-05	33050	160511_QHF_FH_JSI9i_2	90.108	59.538			1.0709	1.0846	38.664	6	3	Median	1.1989	1.0313	NaN	1	0	Median	1.2205	1.4663	24.308	2	1	Median	1.1291	1.1405	NaN	1	0	Median	0.59507	0.65103	9.783	2	2	Median	284160000	136100000	148060000	44634000	22612000	22022000	96228000	41828000	54401000	70113000	30142000	39970000	73189000	41519000	31670000	51222	235	48227	309835;309836;309837;309838;309839;309840	417005;417006;417007;417008;417009;417010;417011;417012	417008			8	
TMAVLQIEAEK	1	Unmodified	1231.6482	0.64822394	354	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			58.914	57.983	2	2.5875E-06	50962	160511_QHF_FH_JSI9i_2	121.9	104.46			1.8292	1.8798	30.759	2	2	Median	1.772	1.5123	NaN	1	1	Median	1.8882	2.3365	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	335790000	115520000	220270000	155420000	58380000	97043000	180370000	57140000	123230000	0	0	0	0	0	0	51223	354	48228	309841;309842	417013;417014;417015	417013			3	
TMDEDIVIQQDDEIR	0	Unmodified	1818.8306	0.830558	2008	P62487	POLR2G	DNA-directed RNA polymerase II subunit RPB7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		98.931	98.767	2	0.050993	89832	160511_QHF_FH_JSI11i_1	44.425	11.337			1.1573	1.125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1573	1.125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	297070000	127940000	169130000	0	0	0	0	0	0	297070000	127940000	169130000	0	0	0	51224	2008	48229	309843	417016	417016			1	
TMDKSELVQK	2	Acetyl (K);Acetyl (Protein N-term)	1261.6224	0.62240312	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	1	1	0	1		By MS/MS	By MS/MS		11	0				2							1	1		64.448	54.924	2	7.2013E-09	22135	160513_QHF_FH_JSI10Kac_1	88.948	74.741			0.49522	0.51987	65.93	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72774	0.82863	NaN	1	0	Median	0.33699	0.32616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11850000	7842700	4007000	0	0	0	4106100	2243000	1863100	7743500	5599600	2143900	0	0	0	51225	1384	48230	309844;309845	417017;417018	417018	1326		2	
TMDKSELVQK	2	Acetyl (K);Acetyl (Protein N-term);Oxidation (M)	1277.6173	0.61731774	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	1	1	1	1			By MS/MS		11	0				1								1		50.77	41.418	2	0.013785	16689	160513_QHF_FH_JSI11Kac_1	44.318	32.271			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51226	1384	48230	309846	417019	417019	1326	1025	1	
TMDLPFLEASTLR	0	Unmodified	1492.7596	0.7595653	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.198	96.904	2	0.00066012	84824	160511_QHF_FH_JSI11i_2	67.726	46.262			0.70471	0.7973	1.1906	2	2	Median	NaN	NaN	NaN	0	0	Median	0.66815	0.80404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74327	0.79061	NaN	1	1	Median	49830000	29888000	19942000	0	0	0	25733000	16425000	9308800	0	0	0	24097000	13464000	10633000	51227	1152	48231	309847;309848;309849	417020;417021;417022;417023;417024	417022			5	
TMDQALK	1	Unmodified	805.40039	0.4003891	73	CON__Q3SX28			yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	14.135	13.512	2	0.0062314	10969	160511_QHF_FH_JSI11i_1	91.906	48.906		+	0.80147	0.7347	11.94	4	2	Median	0.84947	0.7347	11.765	2	2	Median	NaN	NaN	NaN	0	0	Median	0.85862	0.82565	NaN	1	0	Median	0.61061	0.64917	NaN	1	0	Median	9709200000	3782000000	5927200000	7734000000	2934000000	4800000000	0	0	0	948990000	338810000	610170000	1026200000	509220000	517010000	51228	73	48232	309850;309851;309852;309853	417025;417026;417027;417028;417029	417025			5	
TMDVIAEGDPGFK	1	Unmodified	1378.6439	0.64386684	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	58.22	57.694	2	1.8383E-09	52300	160511_QHF_FH_JSI11i_1	108.7	95.004			0.58016	0.63898	20.38	2	2	Median	NaN	NaN	NaN	0	0	Median	0.49132	0.55323	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68505	0.73803	NaN	1	1	Median	70926000	46188000	24738000	0	0	0	34063000	22377000	11686000	0	0	0	36863000	23811000	13052000	51229	4975	48233	309854;309855;309856	417030;417031;417032	417030			3	
TMDYAEVSNTFVR	0	Unmodified	1531.6977	0.69769333	4441	Q9BUI4	POLR3C	DNA-directed RNA polymerase III subunit RPC3	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				64.194	63.261	2	0.009147	55700	160511_QHF_FH_JSI9i_2	67.022	48.711			1.5747	1.3841	NaN	1	1	Median	1.5747	1.3841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12862000	3683900	9177600	12862000	3683900	9177600	0	0	0	0	0	0	0	0	0	51230	4441	48234	309857	417033	417033			1	
TMEEASK	1	Unmodified	794.34802	0.34801917	1351	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	5.6578	5.3658	2	0.009972	3278	160511_QHF_FH_JSI11i_1	67.032	24.032			0.89107	0.99831	2.7524	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82396	0.97907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96365	1.0179	NaN	1	0	Median	1064600000	555970000	508600000	0	0	0	445500000	247100000	198400000	0	0	0	619070000	308870000	310200000	51231	1351	48235	309858;309859;309860	417034;417035	417034			2	
TMEIYSKTTR	1	Acetyl (K)	1270.6227	0.62273747	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.44	37.926	2	0.016874	22444	160513_QHF_FH_JSI11Kac_4	62.823	46.933			4.5282	4.4481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5282	4.4481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16456000	1935400	14521000	0	0	0	0	0	0	16456000	1935400	14521000	0	0	0	51232	1429	48236	309861	417036	417036	1389		1	
TMELAAQSMK	1	Unmodified	1108.5257	0.52566596	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	35.485	34.578	2	0.010404	29378	160511_QHF_FH_JSI11i_2	57.532	41.87			0.9224	1.0043	63.285	3	2	Median	NaN	NaN	NaN	0	0	Median	0.31701	0.3825	NaN	1	0	Median	1.1872	1.2594	NaN	1	1	Median	0.9224	1.0043	NaN	1	1	Median	120600000	74499000	46104000	0	0	0	57062000	42396000	14666000	38194000	19869000	18325000	25347000	12233000	13114000	51233	4534	48237	309862;309863;309864	417037;417038;417039	417038			3	
TMELKPLNVSNNALVWTASDYADGEAK	2	Unmodified	2936.4226	0.42258769	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	91.149	91.116	3	2.4945E-17	81289	160511_QHF_FH_JSI11i_3	101.59	97.947			0.95155	0.88975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95155	0.88975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62044000	36984000	25060000	0	0	0	0	0	0	50240000	25180000	25060000	11803000	11803000	0	51234	1685	48238	309865;309866	417040;417041;417042;417043	417042			4	
TMEPEEEVEDDPK	1	Unmodified	1546.6345	0.63448395	249	O15119	TBX3	T-box transcription factor TBX3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.728	31.464	2	0.00088132	27544	160511_QHF_FH_JSI9i_1	65.347	56.393			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51235	249	48239	309867	417044	417044			1	
TMEWVQTIGLR	0	Unmodified	1332.686	0.68600643	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		77.435	77.435	2	0.0030789	69153	160511_QHF_FH_JSI11i_3	71.451	48.022			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51236	5677	48240	309868	417045	417045			1	
TMFAQVESDDEEAK	1	Unmodified	1598.677	0.67701747	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	42.823	42.227	2	1.3101E-14	37487	160511_QHF_FH_JSI9i_1	158.4	143.71			0.8804	0.90952	24.619	5	3	Median	0.73376	0.6059	NaN	1	0	Median	0.8804	1.0484	NaN	1	1	Median	1.0681	1.0221	16.497	2	2	Median	0.83007	0.84862	NaN	1	0	Median	248310000	137060000	111240000	27181000	13506000	13675000	60372000	34478000	25894000	103540000	55515000	48027000	57212000	33564000	23647000	51237	5063	48241	309869;309870;309871;309872;309873	417046;417047;417048;417049;417050;417051;417052	417052			7	
TMFLPLAER	0	Unmodified	1076.5689	0.56885141	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	73.141	72.302	2	0.00015459	64322	160511_QHF_FH_JSI11i_3	88.948	82.498			0.93201	0.88957	33.488	8	0	Median	1.2713	1.0622	21.657	2	0	Median	0.78489	0.92806	30.016	2	0	Median	0.80157	0.76913	32.859	2	0	Median	0.58748	0.62381	46.769	2	0	Median	457940000	247890000	210050000	66386000	29539000	36848000	91560000	51859000	39701000	160640000	88004000	72635000	139350000	78489000	60865000	51238	2592	48242	309874;309875;309876;309877;309878;309879;309880;309881	417053;417054;417055;417056;417057;417058;417059;417060;417061;417062;417063	417053			11	
TMGFCYQILTEPNADPR	0	Unmodified	2011.9132	0.91318219	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	80.84	79.951	2	7.0214E-11	68995	160511_QHF_FH_JSI12i_2	148.68	132.79			0.95188	0.99201	18.542	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87511	0.87011	NaN	1	0	Median	1.0354	1.131	NaN	1	0	Median	51651000	25459000	26192000	0	0	0	0	0	0	30224000	16156000	14068000	21427000	9303100	12124000	51239	686	48243	309882;309883	417064;417065;417066;417067	417065			4	
TMGVMFTPLTVK	1	Unmodified	1323.6931	0.69306564	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	3.92	3	4	4						1	2	4	3	3	82.5	81.469	2	5.3062E-16	73169	160511_QHF_FH_JSI11i_3	162.36	147.21			0.80477	0.89631	19.182	12	2	Median	1.0877	0.89631	0.42387	2	0	Median	0.79339	0.99649	9.171	4	2	Linear	0.81583	0.7936	14.71	3	0	Median	0.95833	1.033	38.787	3	0	Plateau	3131000000	1636500000	1494500000	419220000	197820000	221400000	684590000	379790000	304800000	1081200000	564460000	516720000	946020000	494390000	451630000	51240	120	48244	309884;309885;309886;309887;309888;309889;309890;309891;309892;309893;309894;309895	417068;417069;417070;417071;417072;417073;417074;417075;417076;417077;417078;417079;417080;417081;417082;417083;417084;417085;417086;417087;417088;417089	417070			22	
TMGVMFTPLTVK	1	Oxidation (M)	1339.688	0.68798027	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	5.95		1	4				1	3		1	4	2	2	73.103	69.069	2	0.0015416	35778	160513_QHF_FH_JSI11Kac_5	72.006	61.176			1.1495	1.1989	52.264	6	2	Median	NaN	NaN	NaN	0	0	Median	1.4419	1.6655	35.27	2	0	Median	0.72772	0.69945	67.918	2	1	Median	1.0782	1.1415	15.222	2	1	Median	167620000	69052000	98565000	0	0	0	21198000	9225000	11973000	68067000	20135000	47932000	78353000	39693000	38661000	51241	120	48244	309896;309897;309898;309899;309900;309901;309902;309903;309904	417090;417091;417092;417093;417094;417095;417096	417094		53;54	7	
TMGYSVTAPEDTR	0	Unmodified	1426.6398	0.6398441	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		37.501	36.756	2	0.01393	32455	160511_QHF_FH_JSI9i_1	53.6	43.647			1.5964	1.4574	8.7486	2	2	Median	1.8272	1.5504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3947	1.37	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76298000	29508000	46790000	31222000	10504000	20717000	0	0	0	45076000	19003000	26072000	0	0	0	51242	275	48245	309905;309906	417097;417098	417098			2	
TMGYSVTAPEDTRR	0	Unmodified	1582.741	0.74095513	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							2	4	1		30.419	29.534	2;3	6.5785E-11	25911	160511_QHF_FH_JSI10i_2	93.494	79.41			0.98239	1.047	19.854	6	1	Median	1.4176	1.1992	9.5852	2	0	Median	0.7199	0.84606	21.031	3	1	Plateau	1.1468	1.0676	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	818950000	413480000	405470000	263260000	122640000	140610000	451740000	244930000	206810000	103960000	45903000	58055000	0	0	0	51243	275	48246	309907;309908;309909;309910;309911;309912;309913	417099;417100;417101;417102;417103;417104;417105;417106;417107;417108	417108			10	
TMHFGTPTAYEK	1	Unmodified	1381.6336	0.63363651	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							2	4	4	3	36.505	35.898	2;3	9.9874E-05	31233	160511_QHF_FH_JSI11i_3	70.622	63.251			0.94458	1.0853	35.541	10	2	Median	1.3766	1.1737	NaN	1	0	Median	1.0435	1.2597	13.45	3	1	Median	1.2471	1.1914	62.557	3	1	Median	0.80554	0.81779	15.388	3	0	Median	917400000	446230000	471160000	89534000	43391000	46143000	193390000	93663000	99729000	314470000	149410000	165060000	320000000	159770000	160230000	51244	4930	48247	309914;309915;309916;309917;309918;309919;309920;309921;309922;309923;309924;309925;309926	417109;417110;417111;417112;417113;417114;417115;417116;417117;417118;417119;417120;417121;417122;417123;417124;417125;417126	417110			18	
TMIISPERLDPFADGGK	1	Unmodified	1845.9295	0.92948418	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	84.04	83.697	3	1.2491E-05	72674	160511_QHF_FH_JSI12i_3	90.714	80.517			0.47428	0.46546	65.276	4	3	Median	0.29973	0.25787	NaN	1	1	Median	0.23708	0.28729	NaN	1	1	Median	0.97671	0.92114	NaN	1	1	Median	0.75046	0.75413	NaN	1	0	Median	393420000	266930000	126490000	107940000	79997000	27943000	121240000	101060000	20183000	76308000	39947000	36361000	87929000	45925000	42004000	51245	542	48248	309927;309928;309929;309930	417127;417128;417129;417130;417131;417132;417133;417134;417135	417133			9	
TMIQQQGGSIVNVGSIVGLK	1	Unmodified	2028.1038	0.10376015	3532	Q8N4T8	CBR4	Carbonyl reductase family member 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	90.161	90.095	3	1.6219E-05	78193	160511_QHF_FH_JSI12i_3	67.396	58.113			0.84359	0.87135	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84359	0.87135	NaN	1	0	Median	14883000	8131200	6751300	0	0	0	0	0	0	0	0	0	14883000	8131200	6751300	51246	3532	48249	309931	417136	417136			1	
TMIQSPSGVILQEAADVHAR	0	Unmodified	2122.0841	0.084087341	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	3	2	74.631	74.147	3	4.7792E-10	64436	160511_QHF_FH_JSI12i_3	118.02	102.77			0.85743	0.85499	20.488	7	6	Median	NaN	NaN	NaN	0	0	Median	0.69338	0.81614	8.2559	2	1	Median	0.85743	0.80903	13.385	3	3	Median	1.1278	1.1398	10.868	2	2	Median	782840000	451320000	331520000	0	0	0	107390000	74442000	32948000	434830000	249000000	185830000	240620000	127870000	112740000	51247	1085	48250	309932;309933;309934;309935;309936;309937;309938	417137;417138;417139;417140;417141;417142;417143;417144;417145	417145			9	
TMIVHDDVESEPAMTPSK	1	Unmodified	1985.9074	0.90742811	733	O95819	MAP4K4	Mitogen-activated protein kinase kinase kinase kinase 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.066	45.563	3	4.7788E-06	39170	160511_QHF_FH_JSI11i_2	67.645	62.35			1.0569	1.0446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0569	1.0446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44329000	21720000	22609000	0	0	0	0	0	0	44329000	21720000	22609000	0	0	0	51248	733	48251	309939	417146	417146			1	
TMLDFPQHVSSDK	1	Unmodified	1503.7028	0.70277871	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	2	5	3	49.021	48.424	2;3	2.1507E-12	41789	160511_QHF_FH_JSI11i_2	122.42	97.204			1.0374	1.0655	18.324	9	3	Median	1.0374	0.90528	NaN	1	0	Median	0.69447	0.83861	8.9111	2	1	Median	1.2174	1.1449	13.054	3	1	Median	1.0051	1.0796	17.484	3	1	Median	622780000	299050000	323740000	57219000	26148000	31071000	111330000	62066000	49260000	230550000	115560000	114980000	223690000	95270000	128420000	51249	4551	48252	309940;309941;309942;309943;309944;309945;309946;309947;309948;309949;309950;309951	417147;417148;417149;417150;417151;417152;417153;417154;417155;417156;417157;417158;417159;417160;417161;417162;417163;417164	417158			18	
TMLELINQLDGFDPR	0	Unmodified	1760.8767	0.87672033	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.25	0.433		6	2							2	1	3	2	101.37	101.29	2;3	5.9375E-09	90384	160511_QHF_FH_JSI11i_3	182.1	163.96			1.1431	1.1709	23.211	7	2	Median	1.6186	1.3889	11.39	2	1	Median	0.79514	0.9798	NaN	1	0	Median	1.0097	1.0245	18.89	2	1	Median	1.0612	1.129	38.819	2	0	Median	842660000	352380000	490280000	173700000	55985000	117720000	82163000	46370000	35793000	412080000	155690000	256390000	174710000	94340000	80373000	51250	1449	48253	309952;309953;309954;309955;309956;309957;309958;309959	417165;417166;417167;417168	417165			4	
TMLELLNQLDGFDSR	0	Unmodified	1750.856	0.85598488	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0		By matching		By MS/MS	2.33	0.471		2	1								1		2	101.43	101.35	2	3.6542E-21	87159	160511_QHF_FH_JSI12i_2	170	151.26			1.5276	1.7419	10.01	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5276	1.8784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5248	1.6381	8.6886	2	0	Median	592390000	290960000	301420000	0	0	0	132690000	64127000	68563000	0	0	0	459700000	226840000	232860000	51251	1983	48254	309960;309961;309962	417169	417169			1	
TMLELLNQLDGFDSRGDVK	1	Unmodified	2150.0678	0.067768574	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	3	1	1	98.389	98.275	3	1.6988E-05	86832	160511_QHF_FH_JSI10i_2	80.638	60.27			1.1266	1.1747	13.872	6	1	Median	1.6349	1.4243	NaN	1	1	Median	1.0339	1.1831	13.32	3	0	Median	1.2276	1.142	NaN	1	0	Median	1.0251	1.0317	NaN	1	0	Median	255930000	131010000	124920000	24287000	11379000	12908000	75869000	31632000	44237000	103780000	58776000	45009000	51990000	29226000	22764000	51252	1983	48255	309963;309964;309965;309966;309967;309968	417170;417171;417172;417173;417174;417175;417176;417177;417178;417179;417180;417181;417182	417178			13	
TMLELLNQLDGFEATK	1	Unmodified	1821.9183	0.91825079	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		4								1	1		2	101.49	101.39	2;3	5.6934E-106	89924	160511_QHF_FH_JSI10i_2	303	244.33			0.82958	0.77201	19.408	3	2	Median	0.9213	0.77201	NaN	1	1	Median	0.51217	0.63444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82958	0.93533	NaN	1	0	Median	849690000	498690000	351000000	231790000	135290000	96505000	285050000	206160000	78892000	0	0	0	332850000	157240000	175600000	51253	1984	48256	309969;309970;309971;309972	417183;417184;417185;417186	417186			4	
TMLELLNQLDGFQPNTQVK	1	Unmodified	2188.1198	0.11980414	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							1	2	3	3	101.33	101.28	2;3	4.1792E-237	87979	160511_QHF_FH_JSI12i_3	415.63	379.96			1.0214	1.0178	27.581	8	0	Median	1.1674	1.0055	NaN	1	0	Median	1.0092	1.2636	NaN	1	0	Median	1.0727	1.0825	4.3611	3	0	Plateau	0.95531	0.95106	39.7	3	0	Median	3142500000	1647300000	1495100000	364160000	169770000	194390000	343060000	195940000	147120000	1013100000	513300000	499850000	1422100000	768300000	653790000	51254	1131	48257	309973;309974;309975;309976;309977;309978;309979;309980;309981	417187;417188;417189;417190;417191;417192;417193;417194;417195;417196;417197	417197			11	
TMLELLNQLDGFQPNTQVK	1	Oxidation (M)	2204.1147	0.11471877	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	94.447	94.442	3	0.010249	83788	160511_QHF_FH_JSI10i_2	36.637	27.222			3.7464	3.9331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7464	3.9331	NaN	1	1	Median	21843000	2761100	19082000	0	0	0	0	0	0	0	0	0	21843000	2761100	19082000	51255	1131	48257	309982;309983	417198;417199	417198		757	2	
TMLESAGGLIQTAR	0	Unmodified	1446.7501	0.75006325	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.02	1	6	3				5	11	5	5	6	10	10	66.497	59.465	2;3	2.6403E-18	31934	160513_QHF_FH_JSI11Kac_5	191.29	136.23			0.93823	0.98457	23.341	29	18	Median	1.0646	0.90069	38.669	4	2	Median	0.73544	0.87164	28.337	6	3	Median	0.99586	1.0103	15.414	9	7	Median	0.92375	1.0071	16.883	10	6	Median	1385300000	687550000	697720000	76421000	34921000	41499000	305160000	152230000	152940000	692440000	347190000	345250000	311240000	153210000	158030000	51256	5616	48258	309984;309985;309986;309987;309988;309989;309990;309991;309992;309993;309994;309995;309996;309997;309998;309999;310000;310001;310002;310003;310004;310005;310006;310007;310008;310009;310010;310011;310012;310013;310014	417200;417201;417202;417203;417204;417205;417206;417207;417208;417209;417210;417211;417212;417213;417214;417215;417216;417217;417218;417219;417220;417221;417222;417223;417224;417225;417226;417227;417228;417229;417230;417231;417232	417219			31	
TMLESAGGLIQTAR	0	Oxidation (M)	1462.745	0.74497787	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.498							6	5		1	4	4	2	60.503	49.722	2;3	1.8124E-11	27123	160513_QHF_FH_JSI11Kac_5	130.56	113.54			0.80461	0.97039	20.692	11	4	Median	1.1856	1.003	NaN	1	1	Median	0.77682	0.92641	20.843	4	3	Median	0.89554	0.87053	21.446	4	0	Median	1.0676	1.1481	10.901	2	0	Median	76239000	42290000	33949000	7634600	3934700	3700000	26859000	15917000	10943000	30397000	16404000	13993000	11349000	6034600	5314100	51257	5616	48258	310015;310016;310017;310018;310019;310020;310021;310022;310023;310024;310025	417233;417234;417235;417236;417237;417238;417239;417240;417241;417242;417243;417244;417245;417246;417247	417244		2715	14	
TMLESLIADK	1	Unmodified	1119.5846	0.58456105	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	67.002	65.703	2	0.0015843	57222	160511_QHF_FH_JSI11i_2	69.276	46.535			0.59803	0.66891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59803	0.66891	NaN	1	1	Median	87218000	54412000	32806000	0	0	0	0	0	0	0	0	0	87218000	54412000	32806000	51258	3229;4066	48259	310026;310027	417248;417249	417249			2	
TMLFNIHSLEWDK	1	Unmodified	1632.797	0.79701344	1391;2534	Q14409;P32189;Q14410	GK3P;GK;GK2	Putative glycerol kinase 3;Glycerol kinase;Glycerol kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			89.677	88.595	3	0.0030846	74133	160511_QHF_FH_JSI10i_3	45.28	35.223			0.77466	0.90367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77466	0.90367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10045000	5803100	4242400	0	0	0	10045000	5803100	4242400	0	0	0	0	0	0	51259	1391;2534	48260	310028;310029	417250;417251;417252	417251			3	
TMLHLTDIQLQDNK	1	Unmodified	1668.8505	0.85050558	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	64.327	63.614	3	2.5073E-15	56361	160511_QHF_FH_JSI11i_3	160.48	140.05			1.0119	0.93503	33.998	5	0	Median	1.1006	0.93503	NaN	1	0	Median	1.1088	1.3162	57.458	2	0	Median	1.0119	0.96977	NaN	1	0	Median	0.90678	0.93237	NaN	1	0	Median	762190000	402170000	360020000	40961000	18790000	22171000	112590000	60825000	51761000	301210000	156840000	144370000	307430000	165720000	141710000	51260	4991	48261	310030;310031;310032;310033;310034	417253;417254;417255;417256;417257;417258;417259;417260;417261	417253			9	
TMLITHMQDLQEVTQDLHYENFR	0	Unmodified	2861.3476	0.3476486	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.75	0.433		3	9							2	6	3	1	95.67	95.354	3;4	3.324E-11	79255	160511_QHF_FH_JSI10i_3	101.29	98.298			0.94531	0.96975	33.281	11	5	Median	1.9812	1.7171	59.86	2	1	Median	0.80571	0.937	17.631	6	4	Median	0.93732	0.87562	1.7121	2	0	Median	0.95227	0.98093	NaN	1	0	Median	335290000	155630000	179660000	38741000	12079000	26662000	98609000	55615000	42994000	133330000	58105000	75220000	64616000	29832000	34784000	51261	2603	48262	310035;310036;310037;310038;310039;310040;310041;310042;310043;310044;310045;310046	417262;417263;417264;417265;417266;417267;417268;417269;417270;417271;417272;417273;417274	417266			13	
TMLLLSR	0	Unmodified	832.48406	0.48405915	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		15.5	0.5								1	1	1		1		62.543	52.349	2	0.011182	28281	160513_QHF_FH_JSI11Kac_6	81.119	39.617			1.2518	1.115	1.4607	2	0	Median	1.368	1.1265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1456	1.1035	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32651000	13750000	18901000	2039400	846750	1192600	0	0	0	30611000	12903000	17708000	0	0	0	51262	1857	48263	310047;310048	417275	417275			1	
TMLPGEHQQVLSNLQSR	0	Unmodified	1936.9789	0.97889399	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			52.716	51.154	3	0.001721	42751	160511_QHF_FH_JSI10i_3	58.83	40.234			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51263	2199	48264	310049	417276	417276			1	
TMLVLALLLAK	1	Unmodified	1184.7567	0.75665218	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	100.69	96.435	2	1.9884E-22	53975	160513_QHF_FH_JSI10Kac_6	161.92	132.44			0.89611	0.93467	15.633	8	8	Median	0.88837	0.74238	8.6661	2	2	Median	0.80514	0.93467	8.8106	2	2	Median	1.006	0.95671	17.288	2	2	Median	0.99892	1.041	2.083	2	2	Median	1399600000	689070000	710580000	358780000	158660000	200120000	242210000	124900000	117310000	533170000	265630000	267530000	265490000	139870000	125610000	51264	1868	48265	310050;310051;310052;310053;310054;310055;310056;310057;310058	417277;417278;417279;417280;417281;417282;417283;417284;417285	417285			9	
TMLVLALLLAK	1	Oxidation (M)	1200.7516	0.7515668	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.406	86.371	2	3.6945E-06	48476	160513_QHF_FH_JSI11Kac_6	111.06	99.698			1.1759	0.99517	22.053	3	1	Median	1.1759	0.99517	NaN	1	0	Median	0.76308	0.87457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2501	1.3442	NaN	1	0	Median	74743000	37615000	37128000	31296000	16286000	15010000	15663000	9387400	6275900	0	0	0	27785000	11941000	15843000	51265	1868	48265	310059;310060;310061;310062	417286;417287;417288;417289	417286		1557	4	
TMLYTPQEMK	1	Unmodified	1240.5832	0.58318084	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	49.741	48.758	2	2.4504E-07	42792	160511_QHF_FH_JSI9i_2	114.84	108.54			1.061	1.1053	12.425	4	0	Linear	1.0201	0.8787	NaN	1	0	Median	0.95657	1.153	NaN	1	0	Median	1.0579	1.0853	NaN	1	0	Median	0.99529	1.1256	NaN	1	0	Median	1443600000	674050000	769560000	361930000	176470000	185460000	236830000	112410000	124420000	517210000	235810000	281400000	327640000	149360000	178280000	51266	5496	48266	310063;310064;310065;310066	417290;417291;417292;417293;417294;417295;417296;417297;417298;417299	417294			10	
TMMEDFRK	1	Oxidation (M)	1072.4682	0.46815109	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									2	1	21.922	21.911	3	0.0060651	21889	160511_QHF_FH_JSI11i_3	47.574	44.081			0.99939	0.93627	28.041	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0125	0.94362	1.1058	2	0	Median	0.5782	0.5807	NaN	1	0	Median	336740000	185390000	151350000	0	0	0	0	0	0	230340000	119060000	111280000	106390000	66321000	40073000	51267	1867	48267	310067;310068;310069	417300;417301	417301		1553;1554	2	
TMMEDFRK	1	Unmodified	1056.4732	0.47323646	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							2	4	7	2	26.309	25.789	2;3	6.9664E-05	21344	160511_QHF_FH_JSI12i_3	113.26	102.04			0.78752	0.80548	50.308	14	5	Median	0.63169	0.54761	24.526	2	0	Median	0.72316	0.87187	32.192	4	0	Median	1.1162	1.1239	69.82	6	5	Median	0.78752	0.80548	2.6267	2	0	Median	3765800000	1897500000	1868400000	370110000	134300000	235820000	710590000	396460000	314130000	1939000000	935240000	1003800000	746120000	431470000	314640000	51268	1867	48267	310070;310071;310072;310073;310074;310075;310076;310077;310078;310079;310080;310081;310082;310083;310084	417302;417303;417304;417305;417306;417307;417308;417309;417310;417311;417312;417313;417314;417315;417316;417317;417318;417319;417320;417321;417322	417322			21	
TMMFLAEHDYGLFHLK	1	Unmodified	1951.9325	0.93246107	3033	Q69YN4	KIAA1429	Protein virilizer homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	87.231	82.89	4	0.0053648	41310	160513_QHF_FH_JSI9Kac_6	50.874	40.24			0.69487	0.6641	22.394	2	2	Median	0.66668	0.56684	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72425	0.77804	NaN	1	1	Median	38525000	22666000	15860000	18554000	11639000	6915400	0	0	0	0	0	0	19971000	11027000	8944400	51269	3033	48268	310085;310086	417323;417324	417323			2	
TMMLVVFK	1	Unmodified	967.52348	0.52348112	2980;5407	Q5VSL9;Q9ULQ0	STRIP1;STRIP2	Striatin-interacting protein 1;Striatin-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	1	2	2	2	79.069	75.15	2	0.0027547	40273	160513_QHF_FH_JSI10Kac_6	89.142	72.215			1.2079	1.0119	14.828	7	0	Median	1.2079	1.0095	NaN	1	0	Median	0.85708	1.0051	0.96105	2	0	Median	1.1999	1.1297	19.614	2	0	Median	1.2713	1.3293	2.2871	2	0	Median	487370000	255970000	231400000	14270000	6249400	8020500	191600000	101420000	90174000	166110000	90217000	75890000	115400000	58078000	57319000	51270	2980;5407	48269	310087;310088;310089;310090;310091;310092;310093	417325;417326;417327;417328;417329;417330;417331;417332	417331			8	
TMNEIYR	0	Unmodified	925.43275	0.43275186	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	22.062	21.28	2	0.023222	17556	160511_QHF_FH_JSI11i_2	55.676	28.151			1.3589	1.42	43.983	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4316	1.7742	NaN	1	0	Median	1.3589	1.42	NaN	1	0	Median	0.6739	0.75958	NaN	1	1	Median	168570000	79325000	89245000	0	0	0	41600000	18961000	22639000	77887000	31536000	46351000	49084000	28829000	20255000	51271	485	48270	310094;310095;310096	417333;417334	417334			2	
TMNISPEQPQH	0	Unmodified	1280.5819	0.58193529	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.034	28.441	2	6.2807E-18	25507	160511_QHF_FH_JSI12i_1	157.95	111.95			0.84437	0.82919	17.221	4	1	Median	1.2257	1.0463	NaN	1	1	Median	0.61424	0.72741	NaN	1	0	Median	0.97258	0.9171	NaN	1	0	Median	0.73306	0.7497	NaN	1	0	Median	247760000	138260000	109500000	37557000	17589000	19968000	62318000	33946000	28372000	66461000	37912000	28549000	81419000	48810000	32609000	51272	5755	48271	310097;310098;310099;310100	417335;417336;417337;417338;417339;417340;417341	417338			7	
TMNIYFPK	1	Unmodified	1012.5052	0.50518852	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.024	58.1	2	0.00070445	50319	160511_QHF_FH_JSI11i_2	108.46	72.581			0.96047	0.9234	11.451	4	0	Median	1.0459	0.89139	NaN	1	0	Median	0.70069	0.87318	NaN	1	0	Median	0.93708	0.95655	NaN	1	0	Median	0.98446	1.1241	NaN	1	0	Median	534970000	246530000	288440000	112240000	42279000	69960000	103290000	55964000	47323000	182960000	92001000	90956000	136490000	56291000	80197000	51273	5495	48272	310101;310102;310103;310104	417342;417343;417344;417345;417346;417347;417348	417346			7	
TMNLNPMILTNILSSPYFK	1	Unmodified	2196.1323	0.13228309	2987	Q5VTL8	PRPF38B	Pre-mRNA-splicing factor 38B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.74	102.75	3	0.047226	89498	160511_QHF_FH_JSI12i_3	34.148	20.722			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40784000	18836000	21948000	0	0	0	0	0	0	0	0	0	40784000	18836000	21948000	51274	2987	48273	310105	417349	417349			0	
TMNNSAENHTANSSMAYPSLVAMASQR	0	Unmodified	2882.2746	0.27456002	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			65.701	64.204	3	4.6315E-14	53759	160511_QHF_FH_JSI10i_3	85.925	82.938			1.2352	1.1843	10.209	2	1	Median	1.5639	1.273	NaN	1	1	Median	0.97552	1.1019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58577000	24845000	33732000	17876000	6572800	11303000	40701000	18272000	22428000	0	0	0	0	0	0	51275	2082	48274	310106;310107;310108	417350;417351;417352;417353	417351			4	
TMNVLAESDPGFK	1	Unmodified	1407.6704	0.67041595	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	59.203	58.711	2	0.00028733	53335	160511_QHF_FH_JSI12i_1	74.76	65.327			0.95726	0.98652	19.003	3	2	Median	NaN	NaN	NaN	0	0	Median	1.049	1.2354	NaN	1	1	Median	0.90366	0.84677	NaN	1	1	Median	0.95726	0.98652	NaN	1	0	Median	155370000	83866000	71506000	0	0	0	52511000	28637000	23874000	50632000	26589000	24043000	52228000	28639000	23589000	51276	3420	48275	310109;310110;310111	417354;417355;417356;417357	417355			4	
TMPGGNDHEIFTDPR	0	Unmodified	1685.7468	0.74676879	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		10	5							3	3	5	4	45.999	45.412	2;3	6.3751E-05	38842	160511_QHF_FH_JSI12i_3	75.819	56.577			0.99255	1.1249	27.91	10	3	Median	1.3272	1.171	NaN	1	1	Median	0.97897	1.2125	5.1459	2	0	Median	1.0488	1.0198	13.4	4	1	Median	0.97258	0.99048	51.334	3	1	Median	1247600000	613510000	634070000	101740000	45181000	56557000	215460000	101540000	113920000	527780000	274760000	253020000	402610000	192030000	210570000	51277	275	48276	310112;310113;310114;310115;310116;310117;310118;310119;310120;310121;310122;310123;310124;310125;310126	417358;417359;417360;417361;417362;417363;417364;417365;417366;417367;417368;417369;417370;417371;417372;417373;417374;417375;417376;417377	417377			20	
TMPILSPGNTQTLTELELK	1	Unmodified	2085.1028	0.1027571	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	3	2	2	98.176	98.018	2;3	1.9217E-09	86115	160511_QHF_FH_JSI11i_2	122.97	105.05			0.96267	1.0048	18.146	8	1	Median	1.4188	1.2	NaN	1	0	Median	0.8391	0.93921	19.747	3	0	Plateau	1.0182	0.98776	6.4633	2	1	Median	1.0388	1.1365	9.3423	2	0	Median	159280000	77874000	81403000	22068000	9091700	12976000	50697000	26601000	24096000	41763000	22375000	19388000	44749000	19806000	24943000	51278	4487	48277	310127;310128;310129;310130;310131;310132;310133;310134	417378;417379;417380;417381;417382;417383;417384;417385;417386;417387;417388;417389;417390;417391	417388			13	
TMPLTSTSLTIGSLALAGMPFLTGFYSK	1	Unmodified	2904.5017	0.50168963	798	P03915	MT-ND5	NADH-ubiquinone oxidoreductase chain 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		101.16	93.059	3	4.7705E-34	53155	160513_QHF_FH_JSI9Kac_6	140.13	127.45			1.2782	1.2675	51.862	3	2	Plateau	1.5461	1.3091	NaN	1	0	Median	1.0162	1.1868	NaN	1	1	Median	0.51812	0.50969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	142040000	55334000	86709000	41550000	14035000	27515000	61611000	21210000	40401000	38883000	20089000	18794000	0	0	0	51279	798	48278	310135;310136;310137	417392;417393;417394	417393			3	
TMPVNGAHK	1	Acetyl (Protein N-term)	995.48585	0.48585006	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	17.848	17.379	2	0.012975	14986	160511_QHF_FH_JSI12i_1	45.081	30.299			0.13613	0.13663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13613	0.13663	NaN	1	1	Median	27554000	24427000	3126500	0	0	0	0	0	0	0	0	0	27554000	24427000	3126500	51280	1414	48279	310138	417395	417395			1	
TMQAVNK	1	Unmodified	790.40072	0.40072345	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	8.3549	8.1172	2	0.012437	5798	160511_QHF_FH_JSI11i_1	69.383	51.617			0.86596	0.90818	32.207	3	0	Median	NaN	NaN	NaN	0	0	Median	0.78127	0.90818	NaN	1	0	Median	0.86596	0.83704	NaN	1	0	Median	1.4993	1.5163	NaN	1	0	Median	338330000	181310000	157030000	0	0	0	115220000	59361000	55856000	109030000	59876000	49156000	114090000	62070000	52015000	51281	5480	48280	310139;310140;310141	417396	417396			1	
TMQAVNKK	2	Acetyl (K)	960.50625	0.50625115	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			20.54	13.142	2	0.025731	8441	160513_QHF_FH_JSI10Kac_3	68.422	39.909			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1388500	1388500	0	0	0	0	1388500	1388500	0	0	0	0	0	0	0	51282	5480	48281	310142	417397	417397	3445		1	
TMQFEPSTMVYDACR	0	Unmodified	1834.7688	0.76882614	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	69.05	68.446	2	3.1381E-05	59842	160511_QHF_FH_JSI11i_2	99.522	85.103			1.5092	1.4957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5092	1.4957	NaN	1	1	Median	15582000	4307500	11275000	0	0	0	0	0	0	0	0	0	15582000	4307500	11275000	51283	5616	48282	310143;310144	417398;417399	417399			2	
TMQGEGPQLLLSEAVSR	0	Unmodified	1814.9196	0.91964777	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	79.97	79.187	2;3	1.1015E-07	69487	160511_QHF_FH_JSI11i_2	151.44	135.19			1.3421	1.3981	14.039	5	4	Median	1.405	1.2367	NaN	1	0	Median	1.1679	1.4324	11.922	2	2	Median	1.3421	1.3981	NaN	1	1	Median	1.6273	1.7612	NaN	1	1	Median	150900000	67991000	82905000	32467000	12765000	19702000	65536000	32275000	33261000	36826000	14762000	22063000	16067000	8188600	7878300	51284	1585	48283	310145;310146;310147;310148;310149;310150;310151;310152	417400;417401;417402;417403;417404;417405;417406;417407;417408	417405			9	
TMQGSEVVNVLK	1	Unmodified	1303.6806	0.6805867	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	54.796	53.949	2	2.6131E-05	47394	160511_QHF_FH_JSI9i_2	115	72.895			0.4655	0.48201	26.356	5	4	Median	0.49532	0.42127	NaN	1	1	Median	0.42961	0.5177	10.104	2	1	Median	0.28024	0.28283	NaN	1	1	Median	0.4655	0.50258	NaN	1	1	Median	1238600000	869150000	369470000	211380000	153290000	58096000	412880000	251740000	161140000	374980000	291680000	83295000	239380000	172430000	66941000	51285	3766	48284	310153;310154;310155;310156;310157	417409;417410;417411;417412;417413	417411			4	
TMQLNLSR	0	Unmodified	961.5015	0.50150012	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	38.529	37.17	2	0.051733	31622	160511_QHF_FH_JSI12i_2	45.68	24.38			1.3402	1.5371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3402	1.5371	NaN	1	1	Median	35607000	16938000	18669000	0	0	0	0	0	0	0	0	0	35607000	16938000	18669000	51286	2947	48285	310158	417414	417414			1	
TMQNTNDVETAR	0	Unmodified	1378.6147	0.61469198	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	14.339	13.938	2	1.8627E-05	11644	160511_QHF_FH_JSI12i_1	112.15	86.588			1.051	1.1422	16.661	5	2	Median	1.0439	0.87958	NaN	1	0	Median	0.96521	1.1643	11.195	2	2	Median	1.1811	1.1422	NaN	1	0	Median	1.3092	1.3582	NaN	1	0	Median	339400000	167770000	171630000	64439000	33283000	31156000	133930000	69923000	64008000	61295000	28369000	32926000	79736000	36199000	43536000	51287	1422	48286	310159;310160;310161;310162;310163	417415;417416;417417;417418;417419;417420;417421;417422	417418			8	
TMQNTSDLDTAR	0	Oxidation (M)	1367.5987	0.59870757	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	14.815	14.563	2	0.0047387	9685	160511_QHF_FH_JSI10i_1	56.043	44.195			1.2246	1.3701	17.841	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.2246	1.3918	NaN	1	0	Median	1.3497	1.2954	NaN	1	1	Median	0.93161	0.99203	NaN	1	1	Median	84765000	33217000	51548000	0	0	0	24631000	9355900	15275000	36700000	13782000	22917000	23434000	10079000	13356000	51288	1065	48287	310164;310165;310166	417423;417424;417425;417426;417427	417425		711	5	
TMQNTSDLDTAR	0	Unmodified	1351.6038	0.60379294	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	22.621	19.771	2	6.7929E-06	16944	160511_QHF_FH_JSI11i_1	123.62	107.98			1.0175	1.0082	12.968	6	6	Median	1.2354	1.0104	NaN	1	1	Median	0.98477	1.1493	NaN	1	1	Median	0.98546	0.95142	7.8908	2	2	Median	0.97033	1.0527	22.809	2	2	Median	725880000	343150000	382730000	171560000	66039000	105520000	97436000	45327000	52109000	173290000	89703000	83590000	283590000	142080000	141510000	51289	1065	48287	310167;310168;310169;310170;310171;310172;310173	417428;417429;417430;417431;417432;417433;417434	417428			7	
TMQNVKHPVTGQFLYQDSNWASK	2	Acetyl (K)	2720.3017	0.30168469	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		75.401	66.064	3	1.6799E-14	36005	160513_QHF_FH_JSI11Kac_6	171.52	162.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24520000	24520000	0	0	0	0	0	0	0	24520000	24520000	0	0	0	0	51290	793	48288	310174	417435	417435	421;422		1	
TMQTLLSLVR	0	Unmodified	1160.6587	0.65872905	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	3	3	3	1	81.018	78.175	2	7.272E-19	70563	160511_QHF_FH_JSI11i_2	173.32	146.19			0.91788	0.90067	15.551	10	1	Median	1.021	0.81448	26.242	3	0	Median	0.77891	0.91821	1.9413	3	1	Plateau	0.93665	0.9143	15.021	3	0	Plateau	0.79123	0.8112	NaN	1	0	Median	1082200000	544090000	538090000	291370000	111710000	179670000	362440000	212360000	150080000	291410000	149160000	142250000	136960000	70862000	66095000	51291	772	48289	310175;310176;310177;310178;310179;310180;310181;310182;310183;310184	417436;417437;417438;417439;417440;417441;417442;417443;417444;417445;417446;417447;417448;417449	417442			14	
TMQTLLSLVR	0	Oxidation (M)	1176.6536	0.65364367	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				75.526	64.998	2	0.025762	33579	160513_QHF_FH_JSI9Kac_5	43.308	31.714			1.1424	0.97186	NaN	1	0	Median	1.1424	0.97186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6613900	3047800	3566100	6613900	3047800	3566100	0	0	0	0	0	0	0	0	0	51292	772	48289	310185	417450	417450			1	
TMSAQIEGGVHGLHSYEK	1	Unmodified	1942.9207	0.92071041	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	39.602	39.504	3;4	6.4796E-06	34707	160511_QHF_FH_JSI11i_3	85.808	79.371			1.1182	1.0644	27.953	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1182	1.0644	9.8858	2	1	Median	1.018	1.0705	47.392	2	1	Median	376380000	197580000	178800000	0	0	0	0	0	0	223250000	112810000	110450000	153130000	84775000	68352000	51293	1182	48290	310186;310187;310188;310189	417451;417452;417453;417454	417452			4	
TMSIEFPEMLAEIITNQIPK	1	Unmodified	2304.1745	0.17454183	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	103.66	103.6	3	2.7461E-11	91328	160511_QHF_FH_JSI11i_2	124.26	109.95			1.2238	1.2006	10.307	4	2	Median	NaN	NaN	NaN	0	0	Median	0.82199	1.0179	NaN	1	0	Median	1.3121	1.2475	5.9029	2	2	Median	1.1792	1.2047	NaN	1	0	Median	71743000	34977000	36766000	0	0	0	22266000	11549000	10717000	33507000	15169000	18338000	15969000	8258000	7711400	51294	806	48291	310190;310191;310192;310193	417455;417456;417457;417458;417459	417456			5	
TMSLILHAADISHPAK	1	Unmodified	1703.9029	0.9028755	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									4		3		1	67.101	58.628	3;4	0.0001345	32193	160513_QHF_FH_JSI10Kac_6	136.34	71.822			1.1322	1.2735	66.239	4	4	Median	NaN	NaN	NaN	0	0	Median	0.9723	1.1676	76.486	3	3	Median	NaN	NaN	NaN	0	0	Median	1.3184	1.3889	NaN	1	1	Median	254920000	133390000	121530000	0	0	0	236490000	123400000	113100000	0	0	0	18432000	9994000	8437900	51295	1832	48292	310194;310195;310196;310197	417460;417461;417462;417463	417463			4	
TMSVSDFNYSR	0	Unmodified	1305.566	0.56595087	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		47.477	46.963	2	0.058625	40477	160511_QHF_FH_JSI11i_2	33.961	27.648			1.2929	1.2889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2929	1.2889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25736000	12338000	13398000	0	0	0	0	0	0	25736000	12338000	13398000	0	0	0	51296	4226	48293	310198	417464	417464			1	
TMTELEIDMNQR	0	Unmodified	1479.6698	0.66976402	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	57.74	56.791	2	7.3452E-05	48626	160511_QHF_FH_JSI12i_2	105.86	70.976			0.87441	0.80976	5.6671	3	3	Median	0.89375	0.778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87441	0.87007	NaN	1	1	Median	0.72083	0.80976	NaN	1	1	Median	111740000	62894000	48847000	31769000	17626000	14144000	0	0	0	30355000	17172000	13182000	49617000	28096000	21521000	51297	1573	48294	310199;310200;310201	417465;417466;417467	417465			3	
TMTGLDTPVLMVIK	1	Unmodified	1517.8197	0.81972272	3538	Q8N573	OXR1	Oxidation resistance protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	97.333	96.93	2	0.0045973	83380	160511_QHF_FH_JSI12i_2	54.784	20.252			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51298	3538	48295	310202	417468	417468			1	
TMTQFLEQGEATLSVAR	0	Unmodified	1880.9302	0.93021246	4092	Q96GK7;Q6P2I3	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	yes	no	0	0	0	0			By MS/MS		2	0		1										1		82.434	81.822	3	0.001187	72007	160511_QHF_FH_JSI11i_2	42.633	36.063			2.3097	2.2639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3097	2.2639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11282000	3548900	7733200	0	0	0	0	0	0	11282000	3548900	7733200	0	0	0	51299	4092	48296	310203	417469	417469			1	
TMTTNSSDPFLNSGTYHSR	0	Unmodified	2114.9327	0.93273166	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								1	4	2	44.442	43.93	3	7.0408E-25	38725	160511_QHF_FH_JSI10i_2	173.98	164.7			0.86233	0.81379	8.1393	7	4	Median	NaN	NaN	NaN	0	0	Median	0.63094	0.76333	NaN	1	0	Median	0.88306	0.85025	6.5869	4	4	Median	0.80853	0.88085	11.315	2	0	Median	880380000	461640000	418740000	0	0	0	143080000	91933000	51144000	576020000	286740000	289280000	161280000	82961000	78322000	51300	1598	48297	310204;310205;310206;310207;310208;310209;310210	417470;417471;417472;417473;417474;417475;417476;417477;417478;417479	417478			10	
TMTTNSSDPFLNSGTYHSRDESTDSGLSMSSYSVPR	0	Unmodified	3913.7007	0.70068939	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			68.751	67.943	4	0.005302	60228	160511_QHF_FH_JSI10i_2	31.137	23.57			1.2846	1.5762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2846	1.5762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41831000	11868000	29963000	0	0	0	41831000	11868000	29963000	0	0	0	0	0	0	51301	1598	48298	310211	417480;417481	417480			2	
TMVAVILHLLK	1	Unmodified	1236.7628	0.76280019	4752	Q9H6T0	ESRP2	Epithelial splicing regulatory protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	1	2	4	1	88.612	80.58	2;3	1.8821E-08	44790	160513_QHF_FH_JSI11Kac_6	116.77	76.051			0.88868	1.0119	42.253	6	2	Median	0.78589	0.65807	NaN	1	0	Median	1.1297	1.3542	23.561	2	0	Median	0.78278	0.76702	59.942	2	2	Median	0.82376	0.89323	NaN	1	0	Median	621630000	342900000	278740000	200040000	112080000	87964000	276140000	161390000	114750000	83727000	39733000	43994000	61723000	29693000	32030000	51302	4752	48299	310212;310213;310214;310215;310216;310217;310218;310219	417482;417483;417484;417485;417486;417487;417488;417489;417490;417491;417492	417484			11	
TMVDPVR	0	Unmodified	816.41637	0.41637351	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		25.654	25.295	2	0.035052	21202	160511_QHF_FH_JSI11i_2	50.966	24.857			1.969	1.9364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.969	1.9364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48533000	18579000	29954000	0	0	0	0	0	0	48533000	18579000	29954000	0	0	0	51303	2678	48300	310220	417493	417493			1	
TMVEAADREK	1	Unmodified	1148.5496	0.54957253	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		11.143	11.143	2	0.0088667	8737	160511_QHF_FH_JSI11i_3	87.913	47.868			0.54605	0.51929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54605	0.51929	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25201000	14952000	10249000	0	0	0	0	0	0	25201000	14952000	10249000	0	0	0	51304	1360	48301	310221	417494	417494			1	
TMVGQGK	1	Unmodified	719.36361	0.36360966	1331	P30038	ALDH4A1	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	6.461	6.0712	2	0.023494	3960	160511_QHF_FH_JSI12i_2	58.661	32.834			1.4077	1.5189	39.971	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1073	1.1449	NaN	1	0	Median	1.7896	2.015	NaN	1	1	Median	941800000	471120000	470680000	0	0	0	0	0	0	604240000	316910000	287330000	337560000	154220000	183350000	51305	1331	48302	310222;310223	417495;417496	417495			2	
TMVQELLDFK	1	Unmodified	1222.6268	0.62676022	2457	Q13620	CUL4B	Cullin-4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.391	82.655	2	1.6867E-09	72788	160511_QHF_FH_JSI9i_2	132.91	112.21			0.86428	0.92665	7.9984	4	0	Median	1.1471	0.97539	NaN	1	0	Median	0.71464	0.88035	NaN	1	0	Median	0.81606	0.83673	NaN	1	0	Median	0.91535	0.98643	NaN	1	0	Median	311050000	183890000	127160000	60535000	32986000	27549000	71115000	43962000	27153000	96613000	57944000	38669000	82789000	48996000	33793000	51306	2457	48303	310224;310225;310226;310227	417497;417498;417499;417500;417501;417502	417499			6	
TMVSQQEK	1	Unmodified	949.45388	0.45388123	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7669	8.4162	2	0.00038196	6328	160511_QHF_FH_JSI12i_1	110.12	77.51			0.94745	0.9869	13.242	4	0	Median	1.2277	1.0197	NaN	1	0	Median	0.8051	0.95516	NaN	1	0	Median	0.84804	0.82335	NaN	1	0	Median	1.0585	1.1293	NaN	1	0	Median	1566700000	810180000	756520000	359990000	151470000	208520000	412150000	221810000	190340000	376070000	210160000	165910000	418480000	226740000	191740000	51307	1304	48304	310228;310229;310230;310231	417503;417504;417505;417506;417507;417508;417509;417510	417505			8	
TMWFAGGFHR	0	Unmodified	1208.5549	0.55493268	3649	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			67.289	58.968	3	0.00064476	32416	160513_QHF_FH_JSI10Kac_6	67.726	60.08			1.0164	1.0311	7.0394	2	0	Median	1.134	0.98108	NaN	1	0	Median	0.91099	1.0838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34501000	16231000	18269000	9133000	4095800	5037200	25368000	12136000	13232000	0	0	0	0	0	0	51308	3649	48305	310232;310233	417511;417512	417512			2	
TMWVIGLVFK	1	Unmodified	1192.6678	0.66783717	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.251	86.948	2	5.2578E-12	49335	160513_QHF_FH_JSI11Kac_6	152.47	99.984			1.2744	1.1995	1.8755	3	0	Plateau	1.4485	1.2182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2744	1.1982	NaN	1	0	Median	1.1991	1.2439	NaN	1	0	Median	495580000	229930000	265660000	168610000	75137000	93468000	0	0	0	208970000	87224000	121750000	118000000	67565000	50438000	51309	1724	48306	310234;310235;310236	417513;417514;417515	417513			3	
TMWVIGLVFK	1	Oxidation (M)	1208.6628	0.66275179	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				90.209	81.494	2	0.01071	45524	160513_QHF_FH_JSI9Kac_6	51.193	30.322			0.7888	0.67615	NaN	1	0	Median	0.7888	0.67615	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20195000	13674000	6521100	20195000	13674000	6521100	0	0	0	0	0	0	0	0	0	51310	1724	48306	310237	417516	417516		1412	1	
TMWVIGLVFKK	2	Unmodified	1320.7628	0.76280019	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	1				By MS/MS	16	0									1				1	90.242	80.799	3	0.015264	43419	160513_QHF_FH_JSI12Kac_6	44.847	37.717			3.3171	3.6505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3171	3.6505	NaN	1	0	Median	13562000	5520500	8041200	0	0	0	0	0	0	0	0	0	13562000	5520500	8041200	51311	1724	48307	310238	417517	417517			0	
TMYLEDR	0	Unmodified	926.41677	0.41676744	1175	P20340;Q9NRW1	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	28.081	27.409	2	0.0074443	22970	160511_QHF_FH_JSI12i_2	88.942	60.43			0.80667	1.4052	24.204	7	1	Linear	1.3515	1.1485	NaN	1	0	Median	0.79766	0.98329	0.77858	2	0	Median	1.0627	1.0582	35.557	2	0	Median	0.66854	0.71304	1.1341	2	1	Median	661810000	322030000	339780000	95604000	42946000	52658000	176400000	90361000	86042000	239900000	114050000	125850000	149900000	74672000	75231000	51312	1175	48308	310239;310240;310241;310242;310243;310244;310245	417518;417519;417520;417521	417518			4	
TMYLLGYIPK	1	Unmodified	1197.6468	0.64676738	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.74	1	5	2					3	8	6	5	5	3	86.092	80.392	2;3	2.0682E-08	77377	160511_QHF_FH_JSI10i_2	126.41	112.29			0.8456	0.87516	30.499	18	4	Median	1.1363	0.951	37.288	5	2	Median	0.79694	0.96079	36.742	5	2	Median	0.85581	0.85918	18.697	5	0	Median	0.78804	0.84405	12.963	3	0	Plateau	5867100000	3044600000	2822500000	1580900000	710700000	870160000	1687800000	911730000	776110000	1835000000	968010000	867020000	763340000	454140000	309200000	51313	1438	48309	310246;310247;310248;310249;310250;310251;310252;310253;310254;310255;310256;310257;310258;310259;310260;310261;310262;310263;310264	417522;417523;417524;417525;417526;417527;417528;417529;417530;417531;417532;417533;417534;417535;417536;417537;417538;417539;417540;417541;417542;417543;417544;417545;417546;417547;417548;417549;417550;417551;417552;417553;417554;417555;417556	417541			34	
TMYLLGYIPK	1	Oxidation (M)	1213.6417	0.641682	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	3	2	2	78.79	69.228	2	6.2722E-12	36404	160513_QHF_FH_JSI12Kac_6	148.05	136.21			0.99889	0.98704	12.217	9	0	Median	1.0944	0.93972	6.9469	2	0	Median	0.92002	1.0765	9.8527	3	0	Median	1.0237	1.0045	12.042	2	0	Median	0.90835	0.9859	24.054	2	0	Median	389820000	206970000	182850000	110950000	56799000	54150000	99908000	54632000	45276000	124820000	66549000	58269000	54143000	28985000	25157000	51314	1438	48309	310265;310266;310267;310268;310269;310270;310271;310272;310273	417557;417558;417559;417560;417561;417562;417563;417564;417565;417566;417567;417568	417567		1116	12	
TMYPAPVTSSVYLSR	0	Unmodified	1670.8338	0.83379288	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	66.565	65.665	2	5.6096E-05	57789	160511_QHF_FH_JSI9i_2	77.305	62.744			0.96164	0.95421	8.9503	4	2	Median	1.0421	0.92162	NaN	1	1	Median	0.74288	0.9126	NaN	1	0	Median	1.1049	1.1082	NaN	1	1	Median	0.8874	0.98796	NaN	1	0	Median	164130000	78242000	85888000	32715000	13120000	19595000	31362000	15586000	15776000	63433000	30378000	33055000	36620000	19157000	17463000	51315	648	48310	310274;310275;310276;310277;310278	417569;417570;417571;417572;417573;417574	417571			6	
TNADTDGMVK	1	Unmodified	1050.4652	0.4651742	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.8	5.88	3					2				1		2	2	16.696	13.5	2	0.00097915	11620	160511_QHF_FH_JSI11i_1	68.626	48.849			1.4308	1.3305	14.999	5	1	Median	1.6352	1.3305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5063	1.463	7.2963	2	0	Median	1.0466	1.118	10.532	2	1	Median	1958300000	884200000	1074100000	624890000	223410000	401480000	0	0	0	680500000	335470000	345030000	652860000	325320000	327540000	51316	935	48311	310279;310280;310281;310282;310283	417575;417576;417577;417578	417575			4	
TNADTDGMVK	1	Oxidation (M)	1066.4601	0.46008882	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	12.2	0.433					3	1					1	2	1	7.9777	0.74303	2	0.030011	3114	160513_QHF_FH_JSI11Kac_3	56.432	26.265			1.0858	1.1263	9.0633	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0985	1.2401	NaN	1	0	Median	1.072	1.0347	NaN	1	0	Median	1.0858	1.1263	NaN	1	0	Median	10337000	5487600	4848900	0	0	0	1817200	1097300	719950	2849300	1380800	1468500	5670000	3009600	2660400	51317	935	48311	310284;310285;310286;310287	417579;417580;417581	417579			3	
TNADVMTALSQGYR	0	Unmodified	1525.7195	0.7194914	885	P07948	LYN	Tyrosine-protein kinase Lyn	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								2	2	2	2	61.255	60.327	2	3.126E-07	54731	160511_QHF_FH_JSI10i_1	90.793	75.527			1.0242	0.89818	20.204	3	2	Median	1.0242	0.89818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88189	0.88776	NaN	1	1	Median	1.1605	1.2669	NaN	1	0	Median	60849000	31097000	29753000	17807000	10680000	7127100	0	0	0	24969000	11800000	13169000	18073000	8616600	9456900	51318	885	48312	310288;310289;310290;310291;310292;310293;310294;310295	417582;417583;417584;417585;417586;417587;417588;417589	417584			8	
TNAFLVATSAPQAVLYNDR	0	Unmodified	2050.0484	0.048353761	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		1	3	3	1	86.138	85.66	2;3	1.2525E-11	76112	160511_QHF_FH_JSI10i_2	140.84	128.07			0.92695	1.0156	30.495	7	2	Median	1.4112	1.1854	NaN	1	0	Median	0.77562	0.91538	25.64	3	2	Median	0.75289	0.75208	52.088	2	0	Median	0.92695	1.0156	NaN	1	0	Median	148350000	78378000	69972000	22812000	8583800	14229000	54260000	30155000	24105000	40326000	23617000	16709000	30951000	16022000	14930000	51319	2535	48313	310296;310297;310298;310299;310300;310301;310302;310303	417590;417591;417592;417593;417594;417595;417596;417597;417598;417599;417600;417601	417601			11	
TNALNVSQK	1	Unmodified	973.51926	0.51925868	5076	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.45	8				4	1				2	4	3	4	48.547	44.565	2	0.00070637	13062	160511_QHF_FH_JSI12i_1	75.652	47.571			0.97234	1.0028	17.314	13	0	Median	1.2059	0.99165	1.8704	2	0	Median	0.89238	1.0592	10.793	4	0	Median	0.93295	0.90792	5.7783	3	0	Plateau	0.98139	1.0507	30.323	4	0	Median	1722600000	814190000	908380000	394630000	163730000	230890000	426300000	198100000	228210000	390730000	205540000	185190000	510910000	246810000	264100000	51320	5076	48314	310304;310305;310306;310307;310308;310309;310310;310311;310312;310313;310314;310315;310316	417602;417603;417604;417605;417606;417607;417608;417609;417610;417611;417612;417613	417605			12	
TNAVSEIK	1	Unmodified	860.46035	0.46034682	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	16.063	15.594	2	0.0031957	13041	160511_QHF_FH_JSI10i_1	74.376	51.884			0.91126	0.96804	12.002	4	0	Median	1.4682	1.197	NaN	1	0	Median	0.83108	0.98077	NaN	1	0	Median	0.9737	0.95547	NaN	1	0	Median	0.85283	0.91164	NaN	1	0	Median	846220000	451310000	394920000	183740000	81430000	102310000	192560000	107940000	84616000	185170000	110880000	74283000	284750000	151050000	133700000	51321	5346	48315	310317;310318;310319;310320	417614;417615;417616;417617	417616			4	
TNCNVAVINVGAPAAGMNAAVR	0	Unmodified	2169.0783	0.078290456	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	68.158	67.715	2	2.6688E-14	61245	160511_QHF_FH_JSI10i_1	127.88	105.68			0.71033	0.70191	39.213	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.97797	1.1128	NaN	1	1	Median	0.53927	0.52622	NaN	1	0	Median	0.93566	0.93626	NaN	1	0	Median	79779000	46741000	33037000	0	0	0	26273000	11270000	15003000	28331000	21006000	7324600	25176000	14466000	10710000	51322	2176	48316	310321;310322;310323	417618;417619;417620;417621;417622	417622			5	
TNDAKVGTLVGEDK	2	Acetyl (K)	1487.7468	0.74675201	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		53.475	43.937	2	0.034897	23882	160513_QHF_FH_JSI11Kac_3	51.841	34.032			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1095500	1095500	0	0	0	0	0	0	0	1095500	1095500	0	0	0	0	51323	5319	48317	310324	417623	417623			1	
TNDQDGLISGILR	0	Unmodified	1400.726	0.72595699	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		70.808	70.508	2	0.00030947	64139	160511_QHF_FH_JSI11i_1	73.273	39.895			0.60482	0.64974	12.984	2	0	Median	NaN	NaN	NaN	0	0	Median	0.49763	0.59274	NaN	1	0	Median	0.7351	0.71222	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	120800000	64307000	56493000	0	0	0	60448000	34955000	25493000	60353000	29353000	31000000	0	0	0	51324	3699	48318	310325;310326	417624;417625	417624			2	
TNDQMVVVYLASLIR	0	Unmodified	1720.9182	0.91819121	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		6							9	4	4	3	4	99.345	94.206	2;3	7.5509E-139	53124	160513_QHF_FH_JSI10Kac_6	279.77	247.76			1.1462	1.1701	7.6335	15	3	Median	1.3835	1.1705	12.203	4	2	Median	0.99169	1.192	4.6206	4	0	Median	1.1705	1.1335	4.1009	3	0	Median	1.0661	1.1521	8.9776	4	1	Median	3210600000	1473700000	1736900000	593570000	225320000	368250000	821930000	392630000	429300000	828210000	375950000	452260000	966920000	479820000	487100000	51325	1748	48319	310327;310328;310329;310330;310331;310332;310333;310334;310335;310336;310337;310338;310339;310340;310341	417626;417627;417628;417629;417630;417631;417632;417633;417634;417635;417636;417637;417638;417639;417640;417641;417642;417643;417644	417643			19	
TNEAQAIETAR	0	Unmodified	1202.5891	0.58912916	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.78	8					3	1			2	3	3	4	37.767	34.753	2	2.8172E-20	12721	160513_QHF_FH_JSI11Kac_3	171.92	97.004			0.89923	0.97596	15.533	12	0	Median	1.0353	0.85115	19.154	2	0	Median	0.84343	0.97731	13.495	3	0	Median	1.0683	1.0218	22.928	3	0	Median	0.91098	0.98595	14.876	4	0	Median	4499700000	2267200000	2232500000	953990000	424350000	529640000	1237700000	680470000	557230000	1213300000	594700000	618590000	1094700000	567660000	527050000	51326	1937	48320	310342;310343;310344;310345;310346;310347;310348;310349;310350;310351;310352;310353	417645;417646;417647;417648;417649;417650;417651;417652;417653;417654;417655;417656;417657;417658;417659	417649			15	
TNENDPAK	1	Unmodified	887.39847	0.39847484	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0				By MS/MS	12	0					1								1	4.873	-2.2338	2	0.032104	1358	160513_QHF_FH_JSI12Kac_2	48.561	39.789			1.371	1.4529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.371	1.4529	NaN	1	0	Median	4558400	1929500	2628900	0	0	0	0	0	0	0	0	0	4558400	1929500	2628900	51327	1733	48321	310354	417660	417660			1	
TNEPVWEENFTFFIHNPK	1	Unmodified	2248.0589	0.058918448	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	92.363	88.122	3	3.1148E-17	42269	160513_QHF_FH_JSI12Kac_6	136.49	122.24			1.0786	1.0448	16.988	8	4	Median	1.157	0.97533	3.9574	2	0	Median	1.0797	1.3048	13.475	2	2	Median	1.024	1.0277	8.1027	2	1	Median	0.90918	0.97676	24.554	2	1	Median	376190000	183600000	192580000	71186000	38281000	32905000	136830000	58126000	78704000	76980000	34405000	42574000	91190000	52788000	38402000	51328	6	48322	310355;310356;310357;310358;310359;310360;310361;310362	417661;417662;417663;417664;417665;417666;417667	417666			6	
TNEQMHQLVAAYK	1	Unmodified	1531.7453	0.74531222	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.63		11	3					2	7	5	5	7	6	39.455	35.663	2;3	5.0844E-22	30287	160511_QHF_FH_JSI11i_2	172.8	161.97			0.97055	0.99368	26.261	19	11	Median	1.1765	1.0249	38.472	5	3	Median	0.81729	1.0127	7.7482	3	1	Plateau	0.93608	0.91234	7.4402	5	3	Median	0.88666	0.90868	30.762	6	4	Median	2880100000	1543000000	1337000000	424670000	161220000	263450000	521490000	263340000	258140000	1395000000	799520000	595500000	538910000	318960000	219950000	51329	891	48323	310363;310364;310365;310366;310367;310368;310369;310370;310371;310372;310373;310374;310375;310376;310377;310378;310379;310380;310381;310382;310383;310384;310385	417668;417669;417670;417671;417672;417673;417674;417675;417676;417677;417678;417679;417680;417681;417682;417683;417684;417685;417686;417687;417688;417689;417690;417691;417692;417693;417694;417695;417696;417697;417698;417699;417700;417701	417684			34	
TNETGYQEAIVK	1	Unmodified	1351.662	0.66195975	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.395	31.791	2	1.1533E-22	28401	160511_QHF_FH_JSI11i_1	172.92	146.25			0.96496	1.0426	32.566	4	0	Median	0.69382	0.57568	NaN	1	0	Median	0.83175	0.96373	NaN	1	0	Median	1.161	1.1279	NaN	1	0	Median	1.1195	1.1626	NaN	1	0	Median	360680000	178990000	181690000	76755000	35614000	41141000	101030000	59144000	41890000	88005000	41813000	46193000	94888000	42422000	52466000	51330	3473	48324	310386;310387;310388;310389	417702;417703;417704;417705;417706;417707;417708	417703			6	
TNFFGTR	0	Unmodified	841.40825	0.40825167	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	2	2	1	38.053	33.719	2	0.0068663	27431	160511_QHF_FH_JSI9i_3	89.55	63.441			0.92973	0.95344	21.524	7	1	Median	1.2737	1.0559	9.3761	2	0	Median	0.80866	0.93079	3.0879	2	0	Median	1.1912	1.1412	46.859	2	1	Median	0.92973	0.95344	NaN	1	0	Median	1321600000	610210000	711440000	324870000	137540000	187330000	382760000	188220000	194540000	223420000	81424000	141990000	390600000	203030000	187580000	51331	1092	48325	310390;310391;310392;310393;310394;310395;310396	417709;417710;417711;417712;417713;417714;417715;417716	417713			8	
TNFFIQLVRPGVAQPEDTVQFR	0	Unmodified	2561.3391	0.33905647	2737	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				87.292	78.673	3	0.00064173	43562	160513_QHF_FH_JSI9Kac_6	77.287	54.384			1.0196	0.86572	NaN	1	1	Median	1.0196	0.86572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42903000	23711000	19192000	42903000	23711000	19192000	0	0	0	0	0	0	0	0	0	51332	2737	48326	310397	417717	417717			1	
TNFFLLLQAVNSHCFPAFLAIPPTQFK	1	Unmodified	3120.6259	0.62591936	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	2	2	1	1	99.327	91.488	3;4	2.5224E-99	54813	160513_QHF_FH_JSI10Kac_6	224.56	204.52			0.84787	0.87283	28.6	4	2	Median	1.051	0.90925	39.571	2	1	Median	0.73501	0.87283	29.517	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	451960000	232040000	219920000	149500000	66126000	83375000	255500000	138730000	116770000	0	0	0	46959000	27184000	19775000	51333	231	48327	310398;310399;310400;310401;310402;310403	417718;417719;417720;417721;417722;417723;417724	417723			7	
TNFISSHTEK	1	Unmodified	1162.5619	0.56185177	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.087	17.126	3	0.0017578	13833	160511_QHF_FH_JSI12i_3	51.454	22.497			1.698	1.7142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.698	1.7142	NaN	1	0	Median	86087000	38507000	47580000	0	0	0	0	0	0	0	0	0	86087000	38507000	47580000	51334	3516	48328	310404	417725	417725			1	
TNFMYQVDTLK	1	Unmodified	1358.654	0.6540376	2804	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	66.339	65.546	2	0.00043728	59763	160511_QHF_FH_JSI12i_1	87.184	58.226			1.2007	1.1181	15.818	6	5	Median	1.1725	0.95338	NaN	1	1	Median	0.78414	0.98872	NaN	1	1	Median	1.2917	1.2964	2.6786	2	1	Median	1.0137	1.0986	19.881	2	2	Median	533620000	278950000	254670000	55161000	29378000	25783000	95842000	61863000	33979000	235570000	117620000	117960000	147040000	70092000	76950000	51335	2804	48329	310405;310406;310407;310408;310409;310410	417726;417727;417728;417729;417730;417731	417728			5	
TNFVQPMPGEGLRPSLPTQAHTTQPTPFK	1	Unmodified	3176.6077	0.60770312	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			74.311	72.853	4	0.00026976	59811	160511_QHF_FH_JSI9i_3	44.811	38.378			0.94085	0.76233	21.209	3	3	Plateau	0.9162	0.74417	3.4092	2	2	Median	0.45189	0.51662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84254000	44557000	39697000	49315000	22830000	26485000	34939000	21727000	13212000	0	0	0	0	0	0	51336	1685	48330	310411;310412;310413	417732;417733;417734	417733			3	
TNFYAEQGGQASDR	0	Unmodified	1542.6699	0.66989867	2907	Q5JTZ9	AARS2	Alanine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	24.984	24.425	2	0.00034902	21767	160511_QHF_FH_JSI12i_1	100.56	76.573			2.0507	2.2822	69.188	4	4	Median	1.3817	1.1739	NaN	1	1	Median	2.1992	2.666	NaN	1	1	Median	6.1342	6.1156	NaN	1	1	Median	1.9123	1.9537	NaN	1	1	Median	307880000	58876000	249000000	27727000	12071000	15656000	80956000	16641000	64315000	131020000	12066000	118950000	68179000	18098000	50081000	51337	2907	48331	310414;310415;310416;310417;310418	417735;417736;417737;417738;417739	417736			5	
TNGDIVPER	0	Unmodified	999.49852	0.49852324	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	10.765	10.859	3	0.059605	8121	160511_QHF_FH_JSI12i_3	13.353	5.7067			1.8285	1.912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8285	1.912	NaN	1	0	Median	57978000	18633000	39345000	0	0	0	0	0	0	0	0	0	57978000	18633000	39345000	51338	4602	48332	310419	417740	417740			1	
TNGDNYLYEIQLSSITSSR	0	Unmodified	2160.0335	0.033491558	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			84.88	84.74	2	0.0013241	76961	160511_QHF_FH_JSI10i_1	73.887	60.686			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51339	1005	48333	310420	417741	417741			1	
TNGDSQQPSSSGLASSK	1	Unmodified	1649.7493	0.74927121	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.94	12.516	2	2.2721E-10	10105	160511_QHF_FH_JSI10i_1	142.85	127.65			0.92324	0.98519	16.822	4	1	Median	1.5203	1.2219	NaN	1	0	Median	0.9001	1.0471	NaN	1	1	Median	0.94698	0.92691	NaN	1	0	Median	0.76733	0.82511	NaN	1	0	Median	168490000	92684000	75803000	39553000	15015000	24539000	40129000	25367000	14762000	45285000	24913000	20372000	43519000	27389000	16130000	51340	5382	48334	310421;310422;310423;310424	417742;417743;417744;417745;417746;417747;417748	417746			7	
TNGILFCGR	0	Unmodified	1036.5124	0.51239916	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	41.204	41.099	2	0.00022946	36559	160511_QHF_FH_JSI10i_2	88.948	40.665			0.44722	0.43579	9.6168	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43129	0.40714	NaN	1	1	Median	0.46375	0.46645	NaN	1	1	Median	384400000	273410000	110990000	0	0	0	0	0	0	192960000	137870000	55085000	191450000	135540000	55905000	51341	1425	48335	310425;310426;310427	417749;417750;417751	417750			3	
TNGKEPELLEPIPYEFMA	1	Unmodified	2077.0078	0.0077940794	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	8	2								3	3	2	2	101.07	100.97	2;3	1.9555E-10	91517	160511_QHF_FH_JSI12i_1	183.28	168.72			0.96337	1.0066	17.199	10	0	Median	1.3884	1.1507	24.531	3	0	Median	0.87227	1.0319	8.0099	3	0	Median	1.0076	0.97784	2.8564	2	0	Median	0.86208	0.92004	2.1755	2	0	Median	4055200000	1987700000	2067600000	487400000	194360000	293040000	1170300000	603050000	567260000	1241500000	606320000	635160000	1156100000	583930000	572140000	51342	1591	48336	310428;310429;310430;310431;310432;310433;310434;310435;310436;310437	417752;417753;417754;417755;417756;417757;417758;417759;417760;417761;417762;417763;417764;417765;417766;417767	417757			16	
TNGKEPELLEPIPYEFMA	1	Oxidation (M)	2093.0027	0.0027087015	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	1	1		By MS/MS	By MS/MS		1	0	3										1	2		91.854	91.654	2	1.6131E-05	83092	160511_QHF_FH_JSI10i_1	108.72	96.356			0.86745	0.91525	46.166	2	1	Median	NaN	NaN	NaN	0	0	Median	0.57211	0.66034	NaN	1	0	Median	1.3153	1.2686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57954000	32382000	25571000	0	0	0	29325000	19596000	9729100	28628000	12786000	15842000	0	0	0	51343	1591	48336	310438;310439;310440	417768;417769;417770;417771;417772;417773	417773		1258	6	
TNGLPVQNGIDADVK	1	Unmodified	1539.7893	0.78928553	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	51.396	50.774	2	1.547E-06	45675	160511_QHF_FH_JSI10i_1	147.33	128.01			1.6635	1.7289	46.913	5	3	Median	3.5108	2.9647	NaN	1	1	Median	0.90333	1.0248	11.492	2	2	Median	2.2226	2.1436	NaN	1	0	Median	1.6635	1.7289	NaN	1	0	Median	137430000	54706000	82721000	30696000	8678500	22018000	47477000	23283000	24194000	28615000	9585700	19029000	30639000	13160000	17479000	51344	2555	48337	310441;310442;310443;310444;310445	417774;417775;417776;417777;417778;417779	417778			6	
TNGLTKPAALAAAPAK	2	Acetyl (K)	1535.8671	0.86714192	2456	Q13619	CUL4A	Cullin-4A	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		65.717	56.11	3	0.037278	29004	160513_QHF_FH_JSI11Kac_3	37.177	24.409			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1066800	1066800	0	0	0	0	0	0	0	1066800	1066800	0	0	0	0	51345	2456	48338	310446	417780	417780			1	
TNHFAIVNLR	0	Unmodified	1183.6462	0.64619053	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13.4	5.2			1						4	2	1	1	1	52.913	45.119	3	0.0022463	24705	160513_QHF_FH_JSI10Kac_6	52.247	38.438			0.91433	0.98725	19.718	5	0	Median	1.1305	0.93837	33.302	2	0	Median	0.83742	0.98725	NaN	1	0	Median	1.1032	1.0758	NaN	1	0	Median	0.7355	0.80475	NaN	1	0	Median	120410000	64032000	56380000	56299000	29122000	27176000	46643000	26441000	20202000	12058000	5727200	6330700	5412200	2741500	2670600	51346	5034	48339	310447;310448;310449;310450;310451	417781;417782;417783	417783			2	
TNHIETLGK	1	Unmodified	1011.5349	0.53490874	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		13.484	13.272	2	0.049593	10455	160511_QHF_FH_JSI11i_2	35.908	20.293			1.7641	1.7886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7641	1.7886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27422000	11339000	16083000	0	0	0	0	0	0	27422000	11339000	16083000	0	0	0	51347	2305	48340	310452	417784	417784			1	
TNHIGHTGYLNTVTVSPDGSLCASGGK	1	Unmodified	2742.3031	0.30314125	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							3	4	3	2	52.999	52.243	3;4	5.2467E-32	44068	160511_QHF_FH_JSI12i_3	150.11	142.58			1.0044	1.054	25.619	12	2	Median	1.4675	1.287	6.4364	3	1	Median	0.96595	1.1468	10.999	4	0	Median	0.82668	0.77523	19.082	3	1	Median	1.0044	1.0203	0.26958	2	0	Median	2872800000	1404000000	1468800000	167890000	59717000	108180000	698340000	305470000	392870000	1179500000	643460000	536060000	827080000	395390000	431700000	51348	2061	48341	310453;310454;310455;310456;310457;310458;310459;310460;310461;310462;310463;310464	417785;417786;417787;417788;417789;417790;417791;417792;417793;417794;417795;417796;417797;417798;417799;417800;417801;417802;417803;417804;417805;417806;417807;417808;417809;417810;417811;417812;417813;417814;417815;417816;417817;417818;417819;417820	417818			36	
TNHIYVSSDDIK	1	Unmodified	1390.6729	0.67285879	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		8						6		3	3	5	3	31.549	28.213	2;3	7.1231E-16	23644	160511_QHF_FH_JSI11i_2	159.94	141.16			1.1042	1.0761	13.372	11	3	Median	1.1272	0.9898	10.697	3	1	Plateau	0.83328	0.99911	10.504	2	0	Median	0.99385	0.98668	13.186	3	1	Plateau	0.8021	0.88656	22.201	3	1	Plateau	834880000	414120000	420770000	166000000	73775000	92220000	208800000	116260000	92542000	274270000	135770000	138500000	185820000	88310000	97506000	51349	3101	48342	310465;310466;310467;310468;310469;310470;310471;310472;310473;310474;310475;310476;310477;310478	417821;417822;417823;417824;417825;417826;417827;417828;417829;417830;417831;417832;417833;417834;417835;417836	417826			16	
TNHSNIMDDPFIR	0	Unmodified	1558.7198	0.71982575	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		52.389	51.607	2;3	0.00028459	44467	160511_QHF_FH_JSI11i_2	74.944	55.182			0.9184	0.85249	6.3079	2	1	Median	0.93875	0.8153	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89849	0.89137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89943000	56532000	33411000	56565000	38298000	18267000	0	0	0	33378000	18234000	15145000	0	0	0	51350	1943	48343	310479;310480	417837;417838;417839	417839			3	
TNIAIFCETR	0	Unmodified	1223.5969	0.59685707	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				64.276	53.596	2	0.032166	28202	160513_QHF_FH_JSI9Kac_5	45.137	1.6245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51351	707	48344	310481	417840	417840			1	
TNIAMLTVLHEIR	0	Unmodified	1509.8337	0.8337333	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	83.472	82.674	3	2.6471E-05	73527	160511_QHF_FH_JSI11i_3	90.367	84.643			1.224	1.1103	13.08	5	2	Median	1.4256	1.1601	13.397	2	1	Median	0.97756	1.1121	NaN	1	0	Median	1.224	1.1103	NaN	1	0	Median	0.8563	0.8873	NaN	1	1	Median	181420000	94089000	87327000	45647000	16194000	29453000	34171000	20378000	13794000	52018000	26795000	25223000	49580000	30722000	18858000	51352	3516	48345	310482;310483;310484;310485;310486	417841;417842;417843;417844;417845;417846	417842			6	
TNIDESAMPPPPPQGVK	1	Unmodified	1776.8716	0.87163495	396	O60216	RAD21	Double-strand-break repair protein rad21 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	1	4	50.736	49.888	2	7.5851E-11	44048	160511_QHF_FH_JSI9i_1	105.17	91.508			1.0348	1.088	19.195	3	2	Median	0.98444	0.8395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1008	1.1527	8.1732	2	2	Median	83676000	35856000	47820000	31618000	15352000	16266000	0	0	0	0	0	0	52058000	20504000	31554000	51353	396	48346	310487;310488;310489;310490;310491;310492;310493;310494;310495;310496;310497	417847;417848;417849;417850;417851;417852;417853;417854;417855;417856;417857;417858	417858			12	
TNIFQIQR	0	Unmodified	1018.556	0.55597854	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6.33	6.85	1	1							1		2	1		55.043	50.34	2	0.0022488	44401	160511_QHF_FH_JSI10i_2	90.37	67.333			0.96975	1.1709	25.526	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96975	1.1709	25.526	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172900000	88209000	84696000	0	0	0	172900000	88209000	84696000	0	0	0	0	0	0	51354	3290	48347	310498;310499;310500	417859;417860;417861	417860			3	
TNIQVTVTGPSSPSPVK	1	Unmodified	1710.9152	0.91521432	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	54.028	53.417	2	3.0055E-10	48127	160511_QHF_FH_JSI10i_1	148.41	125.49			0.77676	0.81753	9.237	4	2	Median	NaN	NaN	NaN	0	0	Median	0.69997	0.82581	15.951	2	2	Median	0.84652	0.82175	NaN	1	0	Median	0.77778	0.81333	NaN	1	0	Median	287210000	180580000	106620000	60626000	60626000	0	120890000	62497000	58394000	42675000	22317000	20358000	63015000	35144000	27870000	51355	3173	48348	310501;310502;310503;310504;310505	417862;417863;417864;417865;417866;417867;417868	417867			7	
TNISDEESEQATEMLVHNAQNLMQSVK	1	Unmodified	3045.4019	0.4019286	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	101.39	101.28	3	0	88965	160511_QHF_FH_JSI11i_2	371.2	358.26			1.0181	1.0021	11.757	4	0	Median	1.0532	0.86581	NaN	1	0	Median	0.74425	0.92199	NaN	1	0	Median	1.0677	1.0891	NaN	1	0	Median	0.98406	1.0907	NaN	1	0	Median	1730300000	857930000	872410000	415910000	196490000	219420000	328150000	190360000	137790000	437050000	213720000	223330000	549230000	257350000	291880000	51356	1139	48349	310506;310507;310508;310509	417869;417870;417871;417872;417873	417871			5	
TNIVALLQK	1	Unmodified	998.61243	0.61243078	5753	Q9Y6X9	MORC2	MORC family CW-type zinc finger protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			71.313	69.831	2	0.001145	57371	160511_QHF_FH_JSI9i_3	79.906	56.478			1.5043	1.2765	NaN	1	1	Median	1.5043	1.2765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10090000	2569500	7520900	10090000	2569500	7520900	0	0	0	0	0	0	0	0	0	51357	5753	48350	310510;310511	417874;417875	417875			2	
TNIVTASVDAINFHDK	1	Unmodified	1743.8792	0.87916317	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		1	1	4	2	72.675	70.611	2;3	1.4785E-27	63271	160511_QHF_FH_JSI11i_3	145.43	124.47			1.0762	1.1092	7.8187	7	0	Median	1.2976	1.1092	NaN	1	0	Median	0.92374	1.1412	NaN	1	0	Median	1.0762	1.021	10.005	3	0	Plateau	1.0056	1.073	11.673	2	0	Median	1300300000	611980000	688290000	175800000	72824000	102980000	208780000	112280000	96504000	480930000	218080000	262860000	434760000	208800000	225960000	51358	99	48351	310512;310513;310514;310515;310516;310517;310518;310519	417876;417877;417878;417879;417880;417881;417882;417883;417884;417885;417886;417887	417878			12	
TNKNKSSISR	2	2 Acetyl (K)	1217.6364	0.6364137	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	0.857					1	4	2	1		1	3	2	2	21.55	12.39	2	5.8651E-05	9701	160513_QHF_FH_JSI11Kac_3	109.39	84.544			0.99342	1.0677	11.598	8	0	Median	1.5164	1.2378	NaN	1	0	Median	0.90483	1.0963	14.053	3	0	Median	1.0208	0.99783	3.8703	2	0	Median	0.95451	1.0399	8.161	2	0	Median	413000000	196800000	216200000	181960000	76127000	105840000	87691000	47527000	40165000	47808000	24070000	23738000	95537000	49075000	46461000	51359	3886	48352	310520;310521;310522;310523;310524;310525;310526;310527	417888;417889;417890;417891;417892;417893	417889	2980;2981		6	
TNKQNQK	2	Unmodified	859.45118	0.45117911	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			5.4943	4.998	3	0.024897	3079	160511_QHF_FH_JSI10i_3	43	9.2036			0.047876	0.057887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.047876	0.057887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84250000	79324000	4925700	0	0	0	84250000	79324000	4925700	0	0	0	0	0	0	51360	3165	48353	310528	417894	417894			1	
TNLANVVLLLK	1	Unmodified	1196.7493	0.74925861	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	98.169	98.002	2	4.1644E-13	84501	160511_QHF_FH_JSI12i_3	148.32	114.52			1.2251	1.186	7.9841	8	3	Median	1.3322	1.1199	11.666	2	1	Median	0.97668	1.1433	4.1007	2	1	Median	1.2477	1.2006	0.64217	2	1	Median	1.1084	1.1415	15.494	2	0	Median	209560000	97509000	112050000	23949000	9766900	14182000	31026000	15138000	15888000	31045000	13681000	17363000	123540000	58922000	64614000	51361	3861	48354	310529;310530;310531;310532;310533;310534;310535;310536	417895;417896;417897;417898;417899;417900;417901;417902;417903;417904;417905;417906	417905			12	
TNLASTVLSLK	1	Unmodified	1145.6656	0.66558856	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	72.625	71.874	2	8.2874E-05	63962	160511_QHF_FH_JSI11i_3	90.05	70.264			1.0144	1.0626	16.005	7	0	Median	1.1563	0.95886	NaN	1	0	Median	1.0821	1.2773	26.035	2	0	Median	1.1416	1.1162	11.416	2	0	Median	0.99288	1.0448	6.864	2	0	Median	270390000	131130000	139260000	25526000	11334000	14192000	46695000	24309000	22386000	83053000	36551000	46502000	115110000	58937000	56176000	51362	2544	48355	310537;310538;310539;310540;310541;310542;310543	417907;417908;417909;417910;417911;417912	417907			6	
TNLDEFAMGSGSTDGVFGPVK	1	Unmodified	2127.9783	0.97828486	4639	Q9H0R6	QRSL1	Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		87.244	86.964	2;3	1.3203E-06	79203	160511_QHF_FH_JSI11i_1	101.36	88.22			1.8738	1.8195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8738	1.8195	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26096000	9671600	16425000	0	0	0	6046000	6046000	0	20050000	3625600	16425000	0	0	0	51363	4639	48356	310544;310545;310546	417913;417914;417915	417914			3	
TNLDESDVQPVK	1	Unmodified	1343.6569	0.65687437	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				2	3	3	3	37.893	31.38	2	1.8889E-41	31502	160511_QHF_FH_JSI11i_1	197.94	154.13			1.1581	1.0787	42.343	10	0	Median	1.195	0.54488	82.264	2	0	Median	0.82437	0.97115	21.277	2	0	Median	0.94746	1.1414	13.802	3	0	Plateau	1.3264	1.3772	14.509	3	0	Plateau	2476000000	1230900000	1245100000	585320000	232070000	353250000	718110000	359030000	359080000	676950000	384450000	292500000	495660000	255370000	240300000	51364	5596	48357	310547;310548;310549;310550;310551;310552;310553;310554;310555;310556;310557	417916;417917;417918;417919;417920;417921;417922;417923;417924;417925;417926;417927;417928;417929;417930;417931;417932	417919			17	
TNLEDVGR	0	Unmodified	902.44576	0.44575938	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	23.869	23.189	2	0.0027003	20495	160511_QHF_FH_JSI12i_1	78.113	55.093			0.87984	0.91766	19.024	3	2	Plateau	1.6102	1.3166	NaN	1	1	Median	0.83313	0.99042	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87984	0.91766	NaN	1	0	Median	232460000	110630000	121840000	74114000	28778000	45337000	82655000	41060000	41595000	0	0	0	75693000	40789000	34904000	51365	1568	48358	310558;310559;310560	417933;417934;417935;417936	417933			4	
TNLEDVGRR	0	Unmodified	1058.5469	0.54687041	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			18.423	17.511	3	1.6173E-05	14867	160511_QHF_FH_JSI10i_2	96.665	59.157			1.1082	1.0753	7.6345	3	0	Plateau	1.2824	1.1108	NaN	1	0	Median	0.98169	1.1565	10.284	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	393840000	179870000	213960000	122530000	42743000	79790000	271300000	137130000	134170000	0	0	0	0	0	0	51366	1568	48359	310561;310562;310563	417937;417938;417939;417940	417940			4	
TNLEEFASK	1	Unmodified	1037.5029	0.50293991	4102	Q96H20	SNF8	Vacuolar-sorting protein SNF8	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	41.392	40.772	2	0.0034628	37060	160511_QHF_FH_JSI12i_1	70.552	49.024			0.65476	0.68262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65476	0.68262	NaN	1	1	Median	48464000	27470000	20994000	0	0	0	0	0	0	0	0	0	48464000	27470000	20994000	51367	4102	48360	310564	417941	417941			1	
TNLEQRK	1	Unmodified	887.48248	0.48247924	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		1	3	4	1	5.5096	3.9459	2;3	0.0062417	2978	160511_QHF_FH_JSI9i_2	52.716	4.8675			1.0826	1.0537	17.1	7	3	Median	NaN	NaN	NaN	0	0	Median	0.7444	0.99417	9.7478	3	1	Plateau	1.2659	1.2409	19.282	3	1	Median	1.1284	1.1538	NaN	1	1	Median	1303900000	656550000	647390000	0	0	0	543660000	284520000	259140000	461040000	224370000	236670000	299230000	147650000	151580000	51368	2265	48361	310565;310566;310567;310568;310569;310570;310571;310572;310573	417942;417943;417944;417945;417946;417947;417948;417949;417950;417951;417952	417947			11	
TNLIFLSGNR	0	Unmodified	1133.6193	0.61930707	4417	Q9BTE6	AARSD1	Alanyl-tRNA editing protein Aarsd1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.86	6.24		1	2					3	1	2	1	3	1	69.321	63.856	2	0.0033942	56785	160511_QHF_FH_JSI11i_3	56.548	47.334			0.80695	0.80458	11.55	6	3	Median	0.86437	0.71996	NaN	1	1	Median	0.77668	0.94432	NaN	1	0	Median	0.83839	0.80297	11.458	3	1	Median	0.76409	0.80619	NaN	1	1	Median	189950000	97859000	92095000	73334000	33196000	40138000	6862300	3797000	3065300	91370000	51509000	39861000	18388000	9357700	9030500	51369	4417	48362	310574;310575;310576;310577;310578;310579;310580	417953;417954;417955;417956;417957;417958	417953			6	
TNLIVNYLPQNMTQDELR	0	Unmodified	2161.0838	0.08375299	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.69	0.462	4	9								2	4	4	3	91.427	90.924	2;3	1.6136E-52	80655	160511_QHF_FH_JSI10i_2	256.77	251.77			0.90706	0.94823	8.9052	11	1	Median	1.0266	0.86872	4.967	2	0	Median	0.79181	0.94823	9.8988	3	1	Median	1.0469	0.98067	11.153	3	0	Median	0.88402	0.95405	7.4751	3	0	Plateau	860830000	453790000	407040000	100450000	48349000	52101000	251330000	145860000	105460000	277740000	134980000	142760000	231320000	124600000	106720000	51370	2700	48363	310581;310582;310583;310584;310585;310586;310587;310588;310589;310590;310591;310592;310593	417959;417960;417961;417962;417963;417964;417965;417966;417967;417968;417969;417970;417971;417972;417973;417974;417975;417976;417977;417978;417979;417980;417981	417979			23	
TNLLDELPQSVLK	1	Unmodified	1468.8137	0.81370936	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	1	2	94.299	93.964	2	5.3065E-05	85001	160511_QHF_FH_JSI10i_1	137.16	91.79			0.70547	0.72587	27.333	5	1	Median	NaN	NaN	NaN	0	0	Median	0.58484	0.67503	2.6908	2	1	Median	0.84911	0.81172	NaN	1	0	Median	0.9204	0.96926	40.893	2	0	Median	45804000	27227000	18576000	0	0	0	19767000	12514000	7252700	9270900	5965900	3305100	16766000	8747500	8018700	51371	3379	48364	310594;310595;310596;310597;310598	417982;417983;417984;417985	417985			3	
TNLLLQAHLSR	0	Unmodified	1264.7252	0.72516913	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	59.315	50.188	2;3	3.7106E-09	27507	160513_QHF_FH_JSI10Kac_6	120.86	102.25			1.2683	1.3257	13.454	6	3	Median	1.4346	1.2527	9.3026	2	2	Median	1.1398	1.3466	3.5061	2	0	Median	1.7675	1.7287	NaN	1	1	Median	1.1442	1.2326	NaN	1	0	Median	351060000	152760000	198290000	73685000	33215000	40470000	216180000	92875000	123300000	39950000	17078000	22872000	21243000	9595100	11648000	51372	552	48365	310599;310600;310601;310602;310603;310604;310605	417986;417987;417988;417989;417990;417991;417992;417993;417994;417995	417994			10	
TNLPEYLQTLLNTLAPLLLFR	0	Unmodified	2442.3886	0.38863243	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			106.02	100.3	2;3	0	59473	160513_QHF_FH_JSI10Kac_6	382.1	354.24			1.1065	1.3212	3.2324	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1065	1.3212	3.2324	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	616400000	299140000	317250000	0	0	0	616400000	299140000	317250000	0	0	0	0	0	0	51373	610	48366	310606;310607	417996;417997	417997			2	
TNLPIFK	1	Unmodified	831.48544	0.48543935	419;5430	O60493;Q9UMY4	SNX3;SNX12	Sorting nexin-3;Sorting nexin-12	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	2	3	3	56.626	55.923	2	0.0062314	48191	160511_QHF_FH_JSI12i_2	91.906	40.94			0.95392	1.0979	10.868	10	2	Median	1.3937	1.1509	1.0208	2	1	Median	0.89638	1.0979	2.1811	2	0	Median	0.98363	0.95467	11.155	3	0	Median	0.9251	1.0588	15.293	3	1	Median	1750300000	834710000	915630000	298810000	125150000	173660000	361800000	184890000	176900000	622370000	288210000	334160000	467360000	236450000	230910000	51374	419;5430	48367	310608;310609;310610;310611;310612;310613;310614;310615;310616;310617	417998;417999;418000;418001;418002;418003;418004;418005;418006;418007;418008;418009;418010;418011;418012;418013;418014	418001			17	
TNLPIFKLK	2	Acetyl (K)	1114.675	0.67503104	419;5430	O60493;Q9UMY4	SNX3;SNX12	Sorting nexin-3;Sorting nexin-12	no	no	1	0	0	1			By MS/MS		16	0									1			1		82.325	73.011	2	0.013476	40241	160513_QHF_FH_JSI11Kac_6	68.016	49.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12375000	12375000	0	0	0	0	0	0	0	12375000	12375000	0	0	0	0	51375	419;5430	48368	310618	418015	418015	210		1	
TNLSAVVAAQSNWEK	1	Unmodified	1616.8158	0.81583463	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.33	0.667	1	4	4							1	1	3	4	66.184	65.65	2;3	1.0451E-29	58237	160511_QHF_FH_JSI11i_3	187.57	124.28			0.95409	0.96751	32.181	9	3	Median	0.79859	0.6987	NaN	1	0	Median	0.97682	1.1737	NaN	1	0	Median	0.95409	0.96751	29.236	3	0	Median	0.93438	0.93554	41.225	4	3	Median	357210000	186940000	170270000	45753000	27645000	18108000	25451000	13353000	12098000	111820000	60762000	51060000	174190000	85179000	89008000	51376	602	48369	310619;310620;310621;310622;310623;310624;310625;310626;310627	418016;418017;418018;418019;418020;418021;418022;418023	418016			8	
TNLSVHEDK	1	Unmodified	1041.5091	0.50908792	1400	P33176	KIF5B	Kinesin-1 heavy chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	2	3	2	11.952	11.484	2;3	5.0934E-05	9335	160511_QHF_FH_JSI10i_2	98.048	41.238			0.75457	0.84736	23.231	8	0	Median	1.4201	1.1989	NaN	1	0	Median	0.69583	0.84736	6.9785	2	0	Median	0.74923	0.75784	11.752	3	0	Median	0.97435	1.099	10.501	2	0	Median	737470000	393570000	343910000	39773000	17480000	22293000	166140000	97066000	69074000	287820000	161320000	126510000	243740000	117710000	126030000	51377	1400	48370	310628;310629;310630;310631;310632;310633;310634;310635	418024;418025;418026;418027;418028;418029	418029			6	
TNLVWDEVSGQWR	0	Unmodified	1588.7634	0.76340513	2617	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	80.567	79.811	2	3.0011E-05	70970	160511_QHF_FH_JSI10i_2	117.98	97.105			0.73164	0.70177	8.233	5	5	Median	0.79018	0.69362	NaN	1	1	Median	0.53678	0.67642	NaN	1	1	Median	0.77954	0.78132	8.9959	2	2	Median	0.65559	0.70177	NaN	1	1	Median	165800000	91177000	74624000	31281000	17320000	13960000	40808000	25272000	15536000	67699000	34001000	33697000	26014000	14583000	11430000	51378	2617	48371	310636;310637;310638;310639;310640	418030;418031;418032;418033;418034	418034			5	
TNLYQDDAVTGEAAGLALGLVMLGSK	1	Unmodified	2606.3262	0.32616811	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		1.67	0.471	1	2								1	1	1		102.64	102.57	3	1.1793E-25	90357	160511_QHF_FH_JSI11i_2	131.94	129.5			1.104	1.2014	6.901	2	0	Median	NaN	NaN	NaN	0	0	Median	1.08	1.2615	NaN	1	0	Median	1.1284	1.1442	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	257130000	124130000	133010000	55140000	26766000	28374000	91472000	45435000	46038000	110520000	51926000	58595000	0	0	0	51379	4272	48372	310641;310642;310643	418035	418035			1	
TNMEEMTEMQGGK	1	Unmodified	1484.5946	0.59455017	4789	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.32	37.95	2	0.0025898	33988	160511_QHF_FH_JSI10i_1	66.267	58.621			0.36435	0.42214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36435	0.42214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17142000	11753000	5388900	0	0	0	17142000	11753000	5388900	0	0	0	0	0	0	51380	4789	48373	310644	418036	418036			1	
TNNFMSFQSYFLQK	1	Unmodified	1753.8134	0.81339179	3098	Q6P1X5	TAF2	Transcription initiation factor TFIID subunit 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		94.635	94.635	2	0.0077257	84356	160511_QHF_FH_JSI11i_3	60.255	45.111			3.0357	2.8482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0357	2.8482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12340000	3544000	8796500	0	0	0	0	0	0	12340000	3544000	8796500	0	0	0	51381	3098	48374	310645	418037	418037			1	
TNNFSAFLANVR	0	Unmodified	1352.6837	0.68369824	4845	Q9HBM1	SPC25	Kinetochore protein Spc25	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			75.907	74.921	2	0.00021329	62880	160511_QHF_FH_JSI10i_3	79.201	66.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51382	4845	48375	310646;310647;310648	418038;418039;418040	418038			3	
TNNHIGGGAFSVDSPR	0	Unmodified	1627.7703	0.77028142	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		33.612	32.901	3	7.2181E-05	27423	160511_QHF_FH_JSI10i_3	60.093	49.148			0.91851	0.92576	33.694	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0518	1.1748	NaN	1	0	Median	0.80209	0.7295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63721000	35961000	27759000	0	0	0	30791000	14495000	16296000	32930000	21466000	11464000	0	0	0	51383	5538	48376	310649;310650	418041;418042;418043	418042			3	
TNNLFKQVYEQK	2	Acetyl (K)	1552.7886	0.78855725	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.724	62.993	2	0.0045709	33625	160513_QHF_FH_JSI11Kac_5	69.01	54.852			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1099600	1099600	0	0	0	0	0	0	0	1099600	1099600	0	0	0	0	51384	2148	48377	310651	418044	418044	2255		1	
TNNVNVSSR	0	Unmodified	989.48902	0.48902118	2964	Q5TBB1	RNASEH2B	Ribonuclease H2 subunit B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		7.6577	7.5406	2	0.041576	5276	160511_QHF_FH_JSI11i_1	54.094	39.937			1.1171	1.049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1171	1.049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63664000	29543000	34121000	0	0	0	0	0	0	63664000	29543000	34121000	0	0	0	51385	2964	48378	310652	418045	418045			1	
TNNVSEHEDTDK	1	Unmodified	1387.5852	0.58516599	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				3	3	4	4	5.6708	2.8516	2;3	6.6934E-54	3161	160511_QHF_FH_JSI10i_1	224.03	205.8			1.0241	1.035	15.296	14	3	Median	1.2793	1.0483	7.4926	3	2	Median	0.98536	1.1454	10.032	3	0	Median	1.0522	1.0261	14.887	4	0	Median	0.76089	0.81352	25.554	4	1	Linear	4517400000	2276900000	2240500000	1054100000	468630000	585430000	1215200000	641070000	574150000	1021400000	490400000	531010000	1226700000	676820000	549890000	51386	1804	48379	310653;310654;310655;310656;310657;310658;310659;310660;310661;310662;310663;310664;310665;310666	418046;418047;418048;418049;418050;418051;418052;418053;418054;418055;418056;418057;418058;418059;418060;418061;418062;418063;418064;418065	418055			20	
TNNYQLSDELRK	1	Unmodified	1479.7318	0.73177065	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.698	32.698	3	0.018092	28408	160511_QHF_FH_JSI11i_3	37.793	23.107			1.1242	1.0692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1242	1.0692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126490000	48947000	77542000	0	0	0	0	0	0	126490000	48947000	77542000	0	0	0	51387	2841	48380	310667	418066	418066			1	
TNPEYIYAPLK	1	Unmodified	1307.6762	0.67615325	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			58.095	57.701	2	0.035665	52051	160511_QHF_FH_JSI10i_1	46.334	23.594			0.36178	0.42357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36178	0.42357	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	237000000	162580000	74412000	0	0	0	237000000	162580000	74412000	0	0	0	0	0	0	51388	264	48381	310668	418067	418067			1	
TNPFGESGGSTK	1	Unmodified	1180.536	0.53603095	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.911	22.773	2	0.0094443	19809	160511_QHF_FH_JSI11i_1	47.559	23.709			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51389	5367	48382	310669	418068	418068			1	
TNPGYLLSPVTAQR	0	Unmodified	1515.8045	0.80454166	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			62.777	61.926	2	0.0011808	54880	160511_QHF_FH_JSI10i_2	62.088	47.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51390	135	48383	310670	418069	418069			1	
TNPPLIQEK	1	Unmodified	1038.571	0.5709599	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	35.652	32.275	2	0.00082071	28861	160511_QHF_FH_JSI12i_1	82.287	60.987			0.91863	0.89668	12.872	6	0	Median	1.0067	0.81824	NaN	1	0	Median	0.66274	0.7665	NaN	1	0	Median	0.9318	0.91386	17.918	2	0	Median	0.91863	0.98364	0.14439	2	0	Median	915930000	488830000	427100000	225630000	113430000	112210000	203190000	119100000	84089000	232940000	122440000	110500000	254170000	133870000	120300000	51391	2084	48384	310671;310672;310673;310674;310675;310676	418070;418071;418072;418073;418074;418075;418076	418071			7	
TNPTIGPAPPPQGPTDK	1	Unmodified	1686.8577	0.85769944	3284	Q7Z6B7	SRGAP1	SLIT-ROBO Rho GTPase-activating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			39.039	38.658	2	0.00035698	34649	160511_QHF_FH_JSI10i_1	69.716	52.349			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51392	3284	48385	310677	418077	418077			1	
TNQELQEINR	0	Unmodified	1243.6157	0.61567826	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.56	4	4	1			4	1			3	3	4	4	24.407	20.044	2	8.0472E-56	19116	160511_QHF_FH_JSI12i_1	232.79	200.44			1.0696	1.0465	20.382	13	2	Median	1.4135	1.0498	11.034	3	2	Plateau	0.83932	0.99437	3.3555	3	0	Median	1.0815	1.0465	2.5828	3	0	Plateau	0.99741	1.0525	36.019	4	0	Median	20178000000	9436900000	10741000000	5412000000	2341100000	3070900000	4874700000	2391400000	2483300000	4681100000	2138900000	2542200000	5210300000	2565500000	2644800000	51393	870	48386	310678;310679;310680;310681;310682;310683;310684;310685;310686;310687;310688;310689;310690;310691	418078;418079;418080;418081;418082;418083;418084;418085;418086;418087;418088;418089;418090;418091;418092;418093;418094;418095;418096;418097;418098;418099;418100	418084			23	
TNQELQEINRVYK	1	Unmodified	1633.8424	0.84238373	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	1		By MS/MS			2	0		1									1			41.463	40.497	3	0.0038567	35654	160511_QHF_FH_JSI10i_2	49.62	37.475			1.8525	2.271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8525	2.271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93928000	24390000	69538000	0	0	0	93928000	24390000	69538000	0	0	0	0	0	0	51394	870	48387	310692	418101	418101			1	
TNQFSVTR	0	Unmodified	951.47739	0.47739386	5501	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	19.292	18.527	2	0.0031073	15174	160511_QHF_FH_JSI11i_2	75.043	54.761			0.96955	1.0239	13.074	4	0	Median	1.2331	1.0534	NaN	1	0	Median	0.66268	0.81999	NaN	1	0	Median	1.0649	1.1042	NaN	1	0	Median	0.88274	0.99525	NaN	1	0	Median	278530000	144520000	134010000	65646000	28725000	36920000	47769000	28649000	19120000	78737000	38673000	40063000	86378000	48474000	37903000	51395	5501	48388	310693;310694;310695;310696	418102;418103;418104;418105	418104			4	
TNQGIPELNASSVGMAK	1	Unmodified	1715.8512	0.85123386	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	60.203	59.66	2	0.00025424	54336	160511_QHF_FH_JSI12i_1	83.53	59.441			1.0377	1.0411	12.08	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97033	0.95585	NaN	1	0	Median	1.1098	1.1339	NaN	1	1	Median	52328000	21810000	30518000	0	0	0	0	0	0	26537000	9054200	17482000	25792000	12756000	13035000	51396	1577	48389	310697;310698	418106;418107	418107			1	
TNQIDLLQAEISENQAIIQK	1	Unmodified	2268.1961	0.19614021	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	94.562	94.337	3	0.00017765	85791	160511_QHF_FH_JSI12i_1	54.668	50.015			0.82855	0.88911	20.033	3	0	Median	NaN	NaN	NaN	0	0	Median	0.61791	0.70311	NaN	1	0	Median	1.1185	1.0474	NaN	1	0	Median	0.82855	0.88911	NaN	1	0	Median	95879000	53948000	41930000	0	0	0	34813000	20557000	14256000	24570000	13106000	11463000	36496000	20285000	16211000	51397	2574	48390	310699;310700;310701	418108;418109	418108			1	
TNQIGTVNDR	0	Unmodified	1116.5523	0.55234972	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	2	1	14.651	11.516	2	1.6618E-07	9872	160511_QHF_FH_JSI11i_1	118.91	98.208			0.93288	0.91364	6.4218	5	0	Median	1.1018	0.91364	NaN	1	0	Median	0.75559	0.8809	NaN	1	0	Median	0.98884	0.96794	7.591	2	0	Median	0.78999	0.86602	NaN	1	0	Median	480030000	238820000	241210000	141750000	72711000	69038000	155620000	84943000	70676000	179660000	79416000	100250000	2996200	1750700	1245500	51398	1813	48391	310702;310703;310704;310705;310706	418110;418111;418112;418113;418114	418110			5	
TNQLLQDIK	1	Unmodified	1071.5924	0.59242362	3811	Q8WXH0	SYNE2	Nesprin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	54.876	44.751	2	4.9722E-05	24538	160513_QHF_FH_JSI10Kac_4	121.5	78.06			1.3685	1.4789	15.924	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0755	1.281	3.2923	2	0	Median	1.5265	1.4789	NaN	1	1	Median	1.5611	1.6716	17.149	2	0	Median	194450000	84703000	109740000	0	0	0	58673000	28887000	29786000	37615000	17928000	19687000	98158000	37888000	60270000	51399	3811	48392	310707;310708;310709;310710;310711	418115;418116;418117;418118;418119	418115			4	
TNQLMETLK	1	Unmodified	1076.5536	0.55359527	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.717	40.251	2	0.0124	34545	160511_QHF_FH_JSI12i_2	47.603	34.566			0.26031	0.25767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26031	0.25767	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47804000	38723000	9081200	0	0	0	0	0	0	47804000	38723000	9081200	0	0	0	51400	2574	48393	310712;310713	418120;418121	418120			2	
TNQLQYMQNVVVK	1	Unmodified	1563.8079	0.80791248	2622	Q15059	BRD3	Bromodomain-containing protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.967	61.317	2	0.0001416	55808	160511_QHF_FH_JSI12i_1	108.47	78.703			0.66908	0.67431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66908	0.67431	NaN	1	1	Median	17615000	10983000	6631700	0	0	0	0	0	0	0	0	0	17615000	10983000	6631700	51401	2622	48394	310714	418122	418122			1	
TNQMYSYFMFTR	0	Unmodified	1587.685	0.68502015	5560	Q9Y375	NDUFAF1	Complex I intermediate-associated protein 30, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.5	6.06		1							3	1	2		1	81.279	73.389	2	2.4332E-24	41254	160513_QHF_FH_JSI10Kac_6	171.05	154.14			1.1669	1.0918	7.0428	3	0	Plateau	1.4177	1.2146	NaN	1	0	Median	0.91154	1.089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1669	1.2423	NaN	1	0	Median	431160000	221540000	209630000	72723000	30260000	42463000	317580000	173160000	144420000	0	0	0	40866000	18120000	22747000	51402	5560	48395	310715;310716;310717;310718	418123;418124;418125;418126;418127;418128	418128			6	
TNQMYSYFMFTR	0	Oxidation (M)	1603.6799	0.67993477	5560	Q9Y375	NDUFAF1	Complex I intermediate-associated protein 30, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									8	2	3		3	76.098	68.186	2	2.3273E-05	38272	160513_QHF_FH_JSI10Kac_6	96.64	90.669			1.6703	1.8995	35.951	4	3	Median	NaN	NaN	NaN	0	0	Median	1.9481	2.2969	34.475	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4399	1.5657	34.933	2	2	Median	145440000	40917000	104530000	0	0	0	108870000	25537000	83333000	0	0	0	36575000	15380000	21195000	51403	5560	48395	310719;310720;310721;310722;310723;310724;310725;310726	418129;418130;418131;418132;418133;418134;418135;418136	418134		2696;2697	8	
TNQNTGMTLPAQK	1	Unmodified	1402.6875	0.68746299	728	O95786	DDX58	Probable ATP-dependent RNA helicase DDX58	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.059	26.748	2	0.0071775	23655	160511_QHF_FH_JSI10i_1	50.284	41.329			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51404	728	48396	310727	418137	418137			1	
TNQVMSSMK	1	Unmodified	1024.4682	0.46815109	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	16.621	16.163	2	0.00068309	13835	160511_QHF_FH_JSI12i_1	80.755	57.231			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51405	4255	48397	310728	418138	418138			1	
TNQYGILFK	1	Acetyl (Protein N-term)	1124.5866	0.58660996	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	12.2	0.748				1	2	2					2	1	2	80.943	72.646	2	5.7448E-05	31426	160513_QHF_FH_JSI12Kac_2	69.998	45.148			1.1618	1.276	18.822	5	0	Median	NaN	NaN	NaN	0	0	Median	1.194	1.3804	6.3011	2	0	Median	1.2415	1.2288	NaN	1	0	Median	0.98152	1.0608	26.119	2	0	Median	81530000	37350000	44181000	0	0	0	15566000	7508300	8057700	14033000	5144500	8888200	51932000	24697000	27235000	51406	4605	48398	310729;310730;310731;310732;310733	418139;418140;418141;418142;418143;418144;418145	418145			7	
TNREGLEYIPLR	0	Unmodified	1459.7783	0.77832691	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		50.878	50.059	3	3.0285E-05	43947	160511_QHF_FH_JSI9i_2	95.018	81.055			0.99545	1.183	14.214	5	0	Median	1.3863	1.183	NaN	1	0	Median	0.9663	1.1491	11.014	2	0	Median	1.135	1.0863	25.084	2	0	Median	NaN	NaN	NaN	0	0	Median	482410000	241830000	240580000	113180000	48027000	65153000	253860000	133470000	120400000	115360000	60330000	55033000	0	0	0	51407	2664	48399	310734;310735;310736;310737;310738	418146;418147;418148;418149;418150;418151	418149			6	
TNSNDDNIR	0	Unmodified	1047.4581	0.45811498	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	5.5896	5.3599	2	0.00078536	3318	160511_QHF_FH_JSI12i_1	74.165	62.654			0.98426	1.0233	30.756	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0187	1.1871	NaN	1	1	Median	1.8586	1.8483	NaN	1	1	Median	0.98426	1.0233	NaN	1	0	Median	349660000	162330000	187320000	0	0	0	105640000	56430000	49214000	133640000	45998000	87646000	110370000	59907000	50462000	51408	2469	48400	310739;310740;310741	418152;418153;418154;418155	418153			4	
TNSPGFQK	1	Unmodified	877.42938	0.42938104	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.499	11.244	2	0.0048957	8980	160511_QHF_FH_JSI10i_1	74.929	47.442			1.1716	1.2451	11.441	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.2492	1.4734	NaN	1	1	Median	1.5525	1.5088	NaN	1	1	Median	1.1716	1.2243	NaN	1	1	Median	451970000	187140000	264840000	0	0	0	143200000	61462000	81735000	144420000	56748000	87668000	164360000	68927000	95434000	51409	2956	48401	310742;310743;310744	418156;418157;418158	418158			3	
TNSQFLSGPQK	1	Unmodified	1205.6041	0.60405094	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	27.331	26.978	2	0.00038783	23840	160511_QHF_FH_JSI10i_1	88.134	56.263			1.2073	1.1631	26.173	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.60796	0.7121	NaN	1	1	Median	1.2073	1.1759	NaN	1	0	Median	0.7857	0.80385	NaN	1	0	Median	102840000	56950000	45892000	0	0	0	41911000	22979000	18932000	34528000	19666000	14862000	26402000	14304000	12098000	51410	3022	48402	310745;310746;310747	418159;418160	418160			2	
TNSTFNQVVLK	1	Unmodified	1249.6667	0.6666512	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.24	6.1	4	4	4			2	3	4		4	7	5	5	49.804	44.623	2	1.4262E-47	39045	160511_QHF_FH_JSI10i_2	212.28	188.85			0.91899	0.95563	12.109	20	0	Median	1.214	1.0166	20.032	4	0	Median	0.81063	0.9679	13.012	6	0	Median	0.96219	1.0041	4.4049	5	0	Linear	0.8749	0.96891	6.3432	5	0	Median	11218000000	5803300000	5415000000	2380400000	1080200000	1300200000	2987700000	1751200000	1236500000	3406000000	1659900000	1746100000	2444100000	1312000000	1132100000	51411	2250	48403	310748;310749;310750;310751;310752;310753;310754;310755;310756;310757;310758;310759;310760;310761;310762;310763;310764;310765;310766;310767;310768	418161;418162;418163;418164;418165;418166;418167;418168;418169;418170;418171;418172;418173;418174;418175;418176;418177;418178;418179;418180;418181;418182;418183;418184;418185;418186;418187;418188;418189;418190;418191;418192	418191			32	
TNSTFNQVVLKR	1	Acetyl (K)	1447.7783	0.77832691	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		61.576	50.669	2	0.0015896	27671	160513_QHF_FH_JSI11Kac_5	83.397	62.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2103500	2103500	0	0	0	0	0	0	0	2103500	2103500	0	0	0	0	51412	2250	48404	310769	418193	418193	2352		1	
TNSTGGSSGSSVGGGSGK	1	Unmodified	1482.6546	0.65464254	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	5.3455	4.9599	2	5.8717E-11	3016	160511_QHF_FH_JSI12i_1	156.17	136.41			1.2617	1.3072	36.057	3	2	Median	0.93546	0.77632	NaN	1	0	Median	1.3026	1.5513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2617	1.3072	NaN	1	1	Median	207450000	90084000	117370000	57656000	20486000	37170000	75319000	36063000	39256000	0	0	0	74478000	33535000	40943000	51413	3395	48405	310770;310771;310772	418194;418195;418196	418194			3	
TNTLAVTGGEDDK	1	Unmodified	1319.6205	0.62048887	2464	Q13685	AAMP	Angio-associated migratory cell protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.053	23.374	2	7.4088E-07	20282	160511_QHF_FH_JSI11i_1	90.793	69.923			0.812	0.83143	18.835	3	0	Plateau	0.86013	0.71296	NaN	1	0	Median	0.5052	0.57601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.812	0.83855	NaN	1	0	Median	134720000	76008000	58707000	45814000	22913000	22901000	34916000	22500000	12416000	0	0	0	53985000	30595000	23390000	51414	2464	48406	310773;310774;310775;310776	418197;418198;418199;418200;418201;418202;418203	418197			7	
TNTLLGHLMGK	1	Unmodified	1183.6383	0.63832796	266	O15230	LAMA5	Laminin subunit alpha-5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	56.81	56.563	3	0.017155	48640	160511_QHF_FH_JSI12i_3	37.94	32.881			1.2245	1.304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2245	1.304	NaN	1	1	Median	18883000	9171500	9711900	0	0	0	0	0	0	0	0	0	18883000	9171500	9711900	51415	266	48407	310777	418204	418204			1	
TNTPQGVLPSSQLK	1	Unmodified	1468.7886	0.78855725	2484	Q14004	CDK13	Cyclin-dependent kinase 13	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.467	44.815	2	0.027588	40738	160511_QHF_FH_JSI12i_1	48.659	32.435			0.98074	0.97217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98074	0.97217	NaN	1	1	Median	14726000	5099700	9626500	0	0	0	0	0	0	0	0	0	14726000	5099700	9626500	51416	2484	48408	310778	418205	418205			1	
TNVALMCMLR	0	Unmodified	1207.5876	0.58755471	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.75	0.433		1	3									3	1	72.444	72.138	2	0.00041204	62594	160511_QHF_FH_JSI12i_3	75.378	58.353			0.73988	0.78234	29.162	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56754	0.54802	29.257	2	1	Median	0.73988	0.78234	NaN	1	0	Median	154270000	90737000	63531000	0	0	0	0	0	0	95535000	63398000	32138000	58733000	27340000	31394000	51417	552	48409	310779;310780;310781;310782	418206;418207;418208;418209	418209			4	
TNVANFPGHSGPITSIAFSENGYYLATAADDSSVK	1	Unmodified	3600.7009	0.70087104	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		3	1	94.124	94.071	3	1.7734E-23	83845	160511_QHF_FH_JSI11i_3	93.737	85.402			0.78514	0.79271	21.577	4	3	Median	0.66297	0.57716	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89932	0.84431	17.7	2	1	Median	0.78966	0.8435	NaN	1	1	Median	65937000	27976000	37961000	15124000	5681800	9442500	0	0	0	38463000	17285000	21178000	12349000	5009600	7339800	51418	5426	48410	310783;310784;310785;310786;310787	418210;418211;418212;418213;418214;418215;418216	418211			6	
TNVLGHLQQGGAPTPFDR	0	Unmodified	1906.965	0.96495848	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.66		4	6						3	4	5	3	1	62.375	59.481	2;3	2.0255E-17	48907	160511_QHF_FH_JSI9i_3	167.16	153.98			0.92777	0.96156	26.333	12	5	Median	1.4095	1.1653	35.728	4	3	Median	0.78393	0.91579	24.509	5	1	Median	1.0225	0.97841	2.26	2	1	Median	0.70723	0.70726	NaN	1	0	Median	1359600000	665410000	694230000	595470000	232260000	363210000	645680000	352480000	293200000	29094000	16331000	12764000	89399000	64343000	25056000	51419	1129	48411	310788;310789;310790;310791;310792;310793;310794;310795;310796;310797;310798;310799;310800	418217;418218;418219;418220;418221;418222;418223;418224;418225;418226;418227;418228;418229;418230;418231;418232	418223			14	
TNVLYELAQYASEPSEQELLR	0	Unmodified	2452.2122	0.21218421	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		101.74	101.65	3	1.5162E-05	89358	160511_QHF_FH_JSI11i_2	57.61	45.177			0.49838	0.55269	67.428	2	0	Median	NaN	NaN	NaN	0	0	Median	0.28083	0.34309	NaN	1	0	Median	0.88446	0.89032	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133640000	82931000	50714000	0	0	0	44850000	32399000	12452000	88795000	50533000	38262000	0	0	0	51420	1100	48412	310801;310802	418233	418233			1	
TNVLYELAQYASEPSEQELLRK	1	Unmodified	2580.3071	0.30714722	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.26		1	7						2	3	2	2	3	99.257	97.382	3;4	1.2966E-163	90177	160511_QHF_FH_JSI11i_3	306.06	261.47			1.1326	1.0634	21.38	10	0	Median	1.1284	0.96855	28.494	3	0	Median	1.1987	1.3718	4.7437	2	0	Median	0.93438	0.88848	15.009	2	0	Median	1.1368	1.1447	12.424	3	0	Median	3683100000	1837600000	1845500000	979340000	455550000	523790000	452620000	206600000	246020000	1665000000	895560000	769440000	586190000	279920000	306270000	51421	1100	48413	310803;310804;310805;310806;310807;310808;310809;310810;310811;310812	418234;418235;418236;418237;418238;418239;418240;418241;418242;418243	418235			10	
TNVNGGAIALGHPLGGSGSR	0	Unmodified	1833.9446	0.94455739	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.04		7	8						3	6	5	4	3	46.852	44.556	2;3	5.0025E-19	36540	160511_QHF_FH_JSI9i_3	160.67	155.13			0.97055	1.0185	24.048	18	8	Median	1.3006	1.1144	19.333	6	3	Median	0.8647	1.0103	6.4063	5	0	Median	0.95703	0.93394	19.996	4	3	Median	0.823	0.86291	52.125	3	2	Plateau	1923200000	950270000	972920000	713090000	300600000	412490000	674780000	380710000	294060000	368860000	185200000	183660000	166460000	83761000	82702000	51422	1545	48414	310813;310814;310815;310816;310817;310818;310819;310820;310821;310822;310823;310824;310825;310826;310827;310828;310829;310830	418244;418245;418246;418247;418248;418249;418250;418251;418252;418253;418254;418255;418256;418257;418258;418259;418260;418261;418262;418263;418264;418265;418266;418267	418251			24	
TNVPDIR	0	Unmodified	813.43447	0.43446642	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	28.52	26.201	2	0.0061558	23408	160511_QHF_FH_JSI12i_1	92.187	47.495			1.1026	1.0665	15.634	5	0	Median	1.3811	1.1256	NaN	1	0	Median	1.167	1.3997	NaN	1	0	Median	1.0149	0.99026	10.488	2	0	Median	0.95168	1.0165	NaN	1	0	Median	288120000	136480000	151640000	69579000	30478000	39101000	78281000	39437000	38844000	79582000	33192000	46390000	60674000	33371000	27304000	51423	2168	48415	310831;310832;310833;310834;310835	418268;418269;418270;418271;418272;418273;418274	418270			7	
TNVVTMPTAHPR	0	Unmodified	1322.6765	0.67650438	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.74		2	7						3	2	3	3	4	31.283	29.157	2;3	2.1274E-05	25103	160511_QHF_FH_JSI11i_3	91.62	79.123			0.96561	0.97991	27.419	11	4	Median	1.0198	0.90609	28.306	2	0	Median	0.85472	1.0607	35.959	3	1	Plateau	0.97346	0.91832	20.447	3	0	Median	0.86678	0.88101	23.124	3	3	Median	964640000	493490000	471150000	127640000	65557000	62083000	230050000	111430000	118630000	280700000	140450000	140250000	326250000	176060000	150190000	51424	2409	48416	310836;310837;310838;310839;310840;310841;310842;310843;310844;310845;310846;310847	418275;418276;418277;418278;418279;418280;418281;418282;418283;418284;418285;418286;418287	418278			13	
TNVVTMPTAHPR	0	Oxidation (M)	1338.6714	0.671419	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	29.007	28.953	3	0.0024641	24344	160511_QHF_FH_JSI12i_3	59.227	56.153			0.9767	0.97292	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9767	0.97292	NaN	1	1	Median	61041000	35695000	25345000	0	0	0	0	0	0	0	0	0	61041000	35695000	25345000	51425	2409	48416	310848	418288	418288		1945	1	
TNWSPAGENVFSYHITYK	1	Unmodified	2112.9905	0.99050453	4305	Q99715	COL12A1	Collagen alpha-1(XII) chain	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.031	74.746	3	8.7157E-06	64857	160511_QHF_FH_JSI12i_3	84.499	74.969			0.96486	0.96478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96486	0.96478	NaN	1	0	Median	61879000	32846000	29033000	0	0	0	0	0	0	0	0	0	61879000	32846000	29033000	51426	4305	48417	310849	418289;418290	418289			2	
TNYNDRYDEIR	0	Unmodified	1457.6535	0.65352033	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							3	3	3	4	23.638	22.973	2;3	5.1154E-05	19350	160511_QHF_FH_JSI11i_3	84.821	81.499			0.95485	1.0061	33.718	12	3	Median	1.7216	1.4974	33.159	3	1	Median	0.7722	0.94215	41.215	2	1	Median	0.99715	0.99885	7.9828	3	0	Median	0.86368	0.89916	7.2111	4	1	Median	1440700000	699390000	741300000	244360000	87924000	156440000	207800000	112060000	95743000	536320000	253940000	282390000	452200000	245470000	206730000	51427	2007	48418	310850;310851;310852;310853;310854;310855;310856;310857;310858;310859;310860;310861;310862	418291;418292;418293;418294;418295;418296;418297;418298;418299;418300;418301	418292			11	
TNYNDRYDEIRR	0	Unmodified	1613.7546	0.75463136	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	2	By MS/MS				3	0			1							1				21.852	20.582	4	0.0015918	16618	160511_QHF_FH_JSI9i_3	53.967	51.58			0.7209	0.59273	NaN	1	0	Median	0.7209	0.59273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45261000	29412000	15849000	45261000	29412000	15849000	0	0	0	0	0	0	0	0	0	51428	2007	48419	310863	418302	418302			1	
TNYVVWGTGK	1	Unmodified	1123.5662	0.56620887	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	15.1	0.639							1	4	2	2	1	2	2	57.911	47.501	2	0.0017325	24225	160513_QHF_FH_JSI10Kac_5	78.655	61.879			1.1515	1.0301	24.361	7	1	Median	1.2815	1.0527	17.402	2	1	Median	0.82673	1.0012	NaN	1	0	Median	1.0686	1.0721	21.928	2	0	Median	1.2524	1.3777	41.116	2	0	Median	37283000	18872000	18411000	12470000	6148200	6321900	6500300	4318300	2181900	11029000	5449800	5579700	7283400	2955900	4327500	51429	3090	48420	310864;310865;310866;310867;310868;310869;310870	418303;418304;418305;418306	418305			3	
TPAAAAAMNLASPR	0	Unmodified	1340.6871	0.68706906	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				47.143	46.087	3	0.013563	40280	160511_QHF_FH_JSI9i_2	27.798	19.199			1.4992	1.3152	NaN	1	1	Median	1.4992	1.3152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18229000	5583600	12646000	18229000	5583600	12646000	0	0	0	0	0	0	0	0	0	51430	5474	48421	310871	418307	418307			1	
TPAAETLSQLGQTLQSLK	1	Unmodified	1885.0157	0.015656649	2714	Q15818	NPTX1	Neuronal pentraxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	98.129	98.022	3	1.3662E-07	84687	160511_QHF_FH_JSI12i_3	118.21	103.94			1.0086	1.0413	27.704	6	2	Median	0.68239	0.5873	NaN	1	0	Median	0.67037	0.79132	NaN	1	1	Median	1.1585	1.136	1.3777	2	1	Median	1.0086	1.0762	15.603	2	0	Median	151530000	74063000	77471000	27056000	13460000	13595000	16007000	11309000	4698100	43490000	22299000	21190000	64982000	26995000	37988000	51431	2714	48422	310872;310873;310874;310875;310876;310877	418308;418309;418310;418311;418312;418313	418313			5	
TPAALAALSLTGSGTPPTAANYPSSSR	0	Unmodified	2558.2976	0.29764517	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			81.895	80.747	3	4.4725E-10	71374	160511_QHF_FH_JSI9i_2	76.152	68.876			1.2829	1.2557	10.175	4	3	Median	1.386	1.1766	6.6977	2	1	Median	1.1575	1.3546	8.2062	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112250000	47165000	65081000	57584000	22041000	35543000	54663000	25125000	29538000	0	0	0	0	0	0	51432	5474	48423	310878;310879;310880;310881	418314;418315;418316;418317	418317			4	
TPAFAESVTEGDVR	0	Unmodified	1477.7049	0.7048872	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	48.403	47.265	2	0.0019838	40414	160511_QHF_FH_JSI12i_2	58.676	49.947			0.99821	1.1083	9.0105	3	0	Median	1.1522	0.97457	NaN	1	0	Median	0.95195	1.1594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99821	1.1083	NaN	1	0	Median	70460000	33604000	36856000	23299000	9188700	14111000	26928000	12848000	14080000	0	0	0	20233000	11568000	8665500	51433	1465	48424	310882;310883;310884	418318;418319	418319			2	
TPAIIYSVHTMTTLIPILSTFLFEDFSK	1	Unmodified	3184.677	0.67701146	2875	Q5BJF2	TMEM97	Transmembrane protein 97	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			104.16	96.691	3;4	4.4875E-34	58092	160513_QHF_FH_JSI10Kac_6	140.55	128.55			0.79122	0.91899	18.434	3	1	Plateau	0.79122	0.66591	NaN	1	1	Median	0.75543	0.90438	7.4172	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1259300000	658940000	600400000	156910000	22357000	134560000	1102400000	636580000	465840000	0	0	0	0	0	0	51434	2875	48425	310885;310886;310887;310888	418320;418321;418322;418323;418324;418325	418322			6	
TPAILYTYSGLR	0	Unmodified	1353.7293	0.72925145	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	71.395	67.619	2	1.0892E-06	36855	160513_QHF_FH_JSI10Kac_6	104.79	85.524			0.94933	1.0616	27.199	10	1	Median	1.0663	0.936	27.286	2	0	Median	0.71562	0.86473	28.437	2	0	Median	1.1531	1.085	32.028	3	0	Median	1.0686	1.0723	28.111	3	1	Plateau	1540300000	756680000	783650000	211550000	102990000	108560000	348300000	208420000	139870000	579740000	251030000	328710000	400740000	194240000	206500000	51435	3553	48426	310889;310890;310891;310892;310893;310894;310895;310896;310897;310898;310899	418326;418327;418328;418329;418330;418331;418332;418333;418334;418335;418336;418337;418338;418339;418340;418341;418342	418342			17	
TPAIPFASYGLHHTSLLK	1	Unmodified	1952.052	0.051982576	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	74.18	73.253	3;4	3.887E-06	64756	160511_QHF_FH_JSI11i_3	91.457	81.926			1.0715	0.90969	7.5531	5	1	Median	1.0978	0.89809	1.8144	2	1	Median	0.8097	0.91377	NaN	1	0	Median	1.1271	1.0614	NaN	1	0	Median	0.86222	0.88658	NaN	1	0	Median	273170000	139670000	133490000	63957000	31480000	32476000	28878000	16921000	11957000	122760000	64107000	58654000	57571000	27166000	30406000	51436	5104	48427	310900;310901;310902;310903;310904	418343;418344;418345;418346;418347;418348;418349;418350;418351;418352;418353	418346			11	
TPAIPTAVNLADSR	0	Unmodified	1424.7623	0.7623425	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.933	59.506	2	0.000887	53986	160511_QHF_FH_JSI11i_1	65.241	43.869			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51437	5474	48428	310905	418354	418354			1	
TPALIVYGDQDPMGQTSFEHLK	1	Unmodified	2446.1839	0.18386096	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	3	4	2	80.243	79.457	3;4	1.3716E-18	68706	160511_QHF_FH_JSI12i_2	149.18	141.38			1.0086	1.0712	5.6918	9	0	Median	1.1819	1.0091	6.0056	2	0	Median	0.9222	1.1324	5.9373	3	0	Median	1.0611	1.0687	0.33737	2	0	Median	1.0023	1.1262	0.094317	2	0	Median	956210000	469820000	486400000	135720000	64765000	70955000	291190000	140020000	151180000	369410000	186800000	182600000	159890000	78232000	81662000	51438	4126	48429	310906;310907;310908;310909;310910;310911;310912;310913;310914;310915;310916	418355;418356;418357;418358;418359;418360;418361;418362;418363;418364;418365;418366;418367;418368;418369;418370;418371;418372;418373;418374;418375	418358			21	
TPALIVYGDQDPMGQTSFEHLK	1	Oxidation (M)	2462.1788	0.17877559	4126	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			70.066	69.27	3	0.006144	61536	160511_QHF_FH_JSI10i_2	35.703	20.449			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51439	4126	48429	310917	418376	418376		2394	1	
TPALVFEHVNNTDFK	1	Unmodified	1730.8628	0.86278482	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.22		9	5						3	3	3	5	6	62.481	60.431	2;3	4.1623E-07	52615	160511_QHF_FH_JSI11i_2	132.76	113			0.97715	0.98517	28.664	17	8	Median	1.1941	1.0169	16.007	3	2	Median	0.90607	1.1194	25.957	3	1	Plateau	1.0247	0.96222	16.178	5	3	Median	0.98061	1.0219	42.489	6	2	Median	2144200000	997730000	1146400000	196130000	79189000	116940000	421870000	203570000	218290000	813700000	359580000	454120000	712470000	355390000	357080000	51440	2076	48430	310918;310919;310920;310921;310922;310923;310924;310925;310926;310927;310928;310929;310930;310931;310932;310933;310934	418377;418378;418379;418380;418381;418382;418383;418384;418385;418386;418387;418388;418389;418390;418391;418392;418393;418394;418395;418396;418397;418398;418399;418400;418401;418402;418403	418390			27	
TPALVFEYINNTDFK	1	Unmodified	1770.8829	0.88285156	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	97.777	97.543	2	0.0011679	85467	160511_QHF_FH_JSI9i_2	61.435	48.479			0.50245	0.583	16.779	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.47444	0.583	NaN	1	1	Median	0.63992	0.65099	NaN	1	1	Median	0.75793	0.81062	NaN	1	1	Median	58585000	36303000	22282000	0	0	0	18938000	12946000	5992800	23408000	12267000	11142000	16238000	11091000	5147100	51441	1165	48431	310935;310936;310937;310938	418404;418405;418406;418407	418405			4	
TPALVNAAVTYSK	1	Unmodified	1333.7242	0.72416608	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	54.147	53.325	2	3.66E-05	46890	160511_QHF_FH_JSI9i_2	116.24	97.144			1.123	1.1247	4.9317	12	0	Median	1.2555	1.0716	1.592	3	0	Plateau	0.96914	1.1462	2.9652	3	0	Median	1.1717	1.0956	1.6427	3	0	Median	1.0373	1.1459	5.8014	3	0	Plateau	2842100000	1410900000	1431200000	474540000	225880000	248660000	744820000	389060000	355760000	917360000	447810000	469550000	705370000	348120000	357250000	51442	592	48432	310939;310940;310941;310942;310943;310944;310945;310946;310947;310948;310949;310950	418408;418409;418410;418411;418412;418413;418414;418415;418416;418417;418418;418419;418420;418421;418422;418423;418424;418425;418426;418427;418428;418429;418430;418431;418432;418433	418426			26	
TPALVNAAVTYSKPR	1	Acetyl (K)	1628.8886	0.88860564	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.531	62.8	2	0.028291	33521	160513_QHF_FH_JSI11Kac_5	55.426	40.453			13.352	13.155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13.352	13.155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32664000	1827500	30837000	0	0	0	0	0	0	32664000	1827500	30837000	0	0	0	51443	592	48433	310951	418434	418434			1	
TPAPATTTSHNPLANILSK	1	Unmodified	1933.0269	0.026890038	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			65.869	64.371	3	0.00078821	53745	160511_QHF_FH_JSI10i_3	52.784	36.842			0.78448	0.9422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78448	0.9422	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90722000	51735000	38987000	0	0	0	90722000	51735000	38987000	0	0	0	0	0	0	51444	2984	48434	310952	418435	418435			1	
TPAQFDADELR	0	Unmodified	1261.5939	0.59388018	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.86	4	2				3	1			2	3	2	3	46.243	41.936	2	3.143E-10	38003	160511_QHF_FH_JSI12i_1	139.86	113.34			1.0346	1.0369	11.361	10	0	Median	1.2604	1.0437	15.262	2	0	Median	0.74821	0.8834	8.7883	3	0	Plateau	1.0888	1.0665	9.8326	2	0	Median	1.0511	1.1404	10.093	3	0	Median	6925600000	3442200000	3483500000	1139900000	495230000	644650000	1557700000	860820000	696840000	2121400000	1055100000	1066300000	2106700000	1031100000	1075600000	51445	805	48435	310953;310954;310955;310956;310957;310958;310959;310960;310961;310962	418436;418437;418438;418439;418440;418441;418442;418443;418444;418445;418446;418447;418448;418449;418450;418451;418452;418453	418440			18	
TPAQFDADELRAAMK	1	Unmodified	1662.8036	0.80355538	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		1	2	59.595	58.953	3	0.0045575	51786	160511_QHF_FH_JSI9i_2	46.408	26.027			0.9938	0.99947	14.062	4	1	Median	1.022	0.86439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3094	1.2131	NaN	1	1	Median	0.9584	0.99947	3.6028	2	0	Median	340440000	173250000	167190000	52600000	26408000	26192000	0	0	0	72785000	33202000	39583000	215050000	113640000	101410000	51446	805	48436	310963;310964;310965;310966	418454;418455;418456;418457	418456			4	
TPAQYDASELK	1	Unmodified	1221.5877	0.58773217	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	5.55	4	4			3	4				3	5	4	3	30.46	25.426	2	8.5477E-11	16101	160513_QHF_FH_JSI11Kac_3	133.07	110.33			0.9475	0.96502	23.966	15	2	Median	1.0974	0.95377	44.424	3	0	Plateau	0.85218	0.98757	12.791	5	1	Median	1.067	1.0475	11.925	4	1	Median	0.84789	0.88974	8.0138	3	0	Plateau	19069000000	9069500000	9999400000	5155500000	2194700000	2960900000	5478600000	2865400000	2613200000	4261400000	1970000000	2291500000	4173300000	2039400000	2133900000	51447	870	48437	310967;310968;310969;310970;310971;310972;310973;310974;310975;310976;310977;310978;310979;310980;310981	418458;418459;418460;418461;418462;418463;418464;418465;418466;418467;418468;418469;418470;418471;418472;418473;418474;418475;418476;418477;418478;418479;418480;418481;418482;418483;418484;418485;418486;418487;418488;418489;418490;418491	418471			34	
TPASPVVHIR	0	Unmodified	1075.6138	0.61382777	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.79		8	7					1	4	5	6	6	3	26.855	24.081	2;3	2.8584E-10	19943	160511_QHF_FH_JSI10i_3	135.43	123.47			0.98275	1.0022	14.553	20	2	Median	1.21	1.0247	11.484	5	0	Median	0.92484	1.0525	12.595	6	2	Median	0.99359	0.98468	10.117	6	0	Median	0.68326	0.69048	15.101	3	0	Plateau	4224200000	2167500000	2056700000	738040000	321950000	416090000	1223900000	616710000	607170000	1516300000	785430000	730850000	746010000	443380000	302630000	51448	1063	48438	310982;310983;310984;310985;310986;310987;310988;310989;310990;310991;310992;310993;310994;310995;310996;310997;310998;310999;311000;311001	418492;418493;418494;418495;418496;418497;418498;418499;418500;418501;418502;418503;418504;418505;418506;418507;418508;418509;418510;418511;418512	418496			21	
TPASSSSALSHPAKPHSVSSAGSSYK	2	Acetyl (K)	2569.2409	0.24085857	4901	Q9NPG3	UBN1	Ubinuclein-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	39.373	30.254	4	0.0012654	16937	160513_QHF_FH_JSI10Kac_6	49.318	41.606			0.96288	0.98403	4.6505	4	0	Median	1.1504	0.98368	NaN	1	0	Median	0.75832	0.90465	NaN	1	0	Median	0.99376	0.98437	NaN	1	0	Median	0.93296	1.0045	NaN	1	0	Median	93959000	50430000	43529000	20801000	10250000	10552000	28145000	15532000	12613000	15855000	7992400	7862400	29158000	16655000	12502000	51449	4901	48439	311002;311003;311004;311005	418513;418514;418515;418516	418516	3261		4	
TPASTPVSGTPQASPMIER	0	Unmodified	1925.9517	0.95167618	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.385	45.709	2	5.301E-09	40594	160511_QHF_FH_JSI9i_1	113.72	97.834			1.0303	1.0591	8.01	4	0	Median	1.3325	1.1266	NaN	1	0	Median	0.84646	0.99568	NaN	1	0	Median	1.1758	1.1315	NaN	1	0	Median	0.90278	0.97209	NaN	1	0	Median	139710000	67692000	72022000	37822000	17215000	20607000	28581000	17317000	11264000	36360000	14252000	22108000	36951000	18907000	18044000	51450	5310	48440	311006;311007;311008;311009	418517;418518;418519;418520;418521;418522;418523;418524;418525	418525			9	
TPAVEGLTEAEEEELRAELTK	1	Unmodified	2314.154	0.15400062	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	4	6	2							1	3	5	3	86.003	85.553	3	2.132E-06	74225	160511_QHF_FH_JSI12i_3	76.186	60.595			0.9583	0.98449	7.7446	12	8	Median	1.1044	0.92253	NaN	1	1	Median	0.80054	0.94372	2.6076	3	3	Plateau	1.0485	1.0449	8.4762	5	4	Median	0.94251	1.054	9.0295	3	0	Median	2591600000	1348500000	1243000000	224950000	99908000	125040000	556170000	308160000	248010000	1155900000	591030000	564860000	654580000	349440000	305140000	51451	329	48441	311010;311011;311012;311013;311014;311015;311016;311017;311018;311019;311020;311021	418526;418527;418528;418529;418530;418531;418532;418533;418534;418535;418536;418537;418538;418539;418540;418541;418542;418543;418544;418545;418546;418547;418548	418548			23	
TPCEEILVK	1	Unmodified	1087.5583	0.5583463	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.42	36.808	2	0.0029208	32790	160511_QHF_FH_JSI10i_1	62.582	51.071			0.96866	1.0383	24.036	4	0	Median	1.397	1.1493	NaN	1	0	Median	0.80686	0.93793	NaN	1	0	Median	0.74093	0.72378	NaN	1	0	Median	1.1629	1.2382	NaN	1	0	Median	819600000	406920000	412680000	111370000	50638000	60734000	197420000	95924000	101500000	257140000	147880000	109260000	253670000	112480000	141190000	51452	1192	48442	311022;311023;311024;311025	418549;418550;418551;418552	418552			4	
TPCEEILVKHVGSR	1	Acetyl (K)	1665.8508	0.85083993	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15.2	0.433								3	1		1	2	1	57.081	46.619	3	0.00050195	25631	160513_QHF_FH_JSI11Kac_5	69.331	57.185			0.50489	0.53448	157.52	4	1	Median	NaN	NaN	NaN	0	0	Median	1.3462	1.5936	NaN	1	0	Median	0.12128	0.11968	142.5	2	1	Median	0.77287	0.87139	NaN	1	0	Median	46657000	37559000	9098700	0	0	0	4832000	2114200	2717800	37084000	32828000	4255800	4741500	2616500	2125000	51453	1192	48443	311026;311027;311028;311029	418553;418554	418554	1058		2	
TPCNAGTFSQPEK	1	Unmodified	1435.6402	0.64017845	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.267	20.745	2	0.00012499	17815	160511_QHF_FH_JSI11i_1	86.911	76.624			1.0285	1.1151	22.588	4	0	Median	1.8019	1.449	NaN	1	0	Median	0.83892	1.0049	NaN	1	0	Median	0.88068	0.86791	NaN	1	0	Median	1.2011	1.2375	NaN	1	0	Median	297240000	139260000	157980000	41708000	12961000	28747000	64369000	35286000	29083000	92070000	44092000	47977000	99090000	46919000	52171000	51454	359	48444	311030;311031;311032;311033	418555;418556;418557;418558;418559;418560;418561	418555			7	
TPDDFLNSVDEMDTGDTINQSTLPSQQNR	0	Unmodified	3237.4368	0.43679378	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		83.777	83.327	3	6.4281E-14	75646	160511_QHF_FH_JSI10i_1	78.921	76.726			0.89655	0.93624	6.173	3	3	Plateau	1.0282	0.83836	NaN	1	1	Median	0.82392	0.93624	NaN	1	1	Median	0.97558	0.92935	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60411000	35126000	25285000	14634000	6064500	8569000	24036000	15774000	8262200	21741000	13288000	8453400	0	0	0	51455	1598	48445	311034;311035;311036;311037	418562;418563;418564;418565	418563			4	
TPDQAILWLWK	1	Unmodified	1369.7394	0.73942221	3183	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	89.944	81.774	2	0.0026574	43646	160513_QHF_FH_JSI12Kac_6	83.081	72.252			0.90375	1.0454	12.713	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90375	1.0454	NaN	1	0	Median	0.88298	0.84885	NaN	1	0	Median	0.99685	1.0688	NaN	1	0	Median	183780000	101630000	82156000	0	0	0	55911000	30095000	25816000	71670000	43746000	27924000	56203000	27788000	28415000	51456	3183	48446	311038;311039;311040	418566;418567;418568	418567			3	
TPDSFEESQGEEIGK	1	Unmodified	1651.7213	0.72132512	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		35.903	35.16	2	0.00039217	31635	160511_QHF_FH_JSI11i_1	74.611	59.92			1.2575	1.1214	27.842	2	0	Median	1.1045	0.92096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4318	1.3654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68983000	28117000	40866000	36315000	15784000	20530000	0	0	0	32669000	12333000	20336000	0	0	0	51457	3003	48447	311041;311042	418569;418570;418571	418569			3	
TPDTPFSLFEGMAGTIYFLADLLVPTK	1	Unmodified	2943.498	0.49798446	380	O43813	LANCL1	LanC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	106.53	98.996	2;3	1.2557E-71	59739	160513_QHF_FH_JSI10Kac_6	202.73	189.05			1.0916	0.9498	10.722	3	0	Plateau	1.169	1.0013	NaN	1	0	Median	0.80488	0.9498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0916	1.1676	NaN	1	0	Median	907560000	483850000	423710000	20651000	9951800	10699000	868910000	466050000	402860000	0	0	0	17994000	7843200	10151000	51458	380	48448	311043;311044;311045;311046	418572;418573;418574;418575;418576;418577;418578	418577			7	
TPEASPEPK	1	Unmodified	954.46583	0.46582612	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	8.5749	8.2241	2	0.00072092	6084	160511_QHF_FH_JSI12i_1	75.378	47.853			0.8858	0.92041	9.0323	4	0	Median	1.1488	0.95085	NaN	1	0	Median	0.85814	1.023	NaN	1	0	Median	0.91434	0.89095	NaN	1	0	Median	0.81463	0.82803	NaN	1	0	Median	834420000	454770000	379640000	216240000	108330000	107920000	263230000	154470000	108760000	170090000	95764000	74330000	184850000	96217000	88633000	51459	4272	48449	311047;311048;311049;311050	418579;418580;418581;418582	418579			4	
TPEAVQK	1	Unmodified	771.41267	0.41266834	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	6.5817	2.7257	2	0.0075989	3547	160511_QHF_FH_JSI11i_1	75.311	28.96			0.80972	0.90807	8.1807	4	0	Median	1.2581	0.99891	NaN	1	0	Median	0.80277	0.94959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78925	0.85156	2.7653	2	0	Median	2214100000	1077700000	1136400000	1169700000	504500000	665160000	11159000	5278300	5880500	0	0	0	1033300000	567920000	465370000	51460	1650	48450	311051;311052;311053;311054;311055;311056	418583;418584;418585;418586;418587;418588;418589	418583			7	
TPEAVQKLLEQGLR	1	Acetyl (K)	1622.8992	0.89917033	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.6	0.49								2	3			4	1	85.67	75.852	2;3	2.1262E-07	40451	160513_QHF_FH_JSI12Kac_6	117.07	94.352			0.71976	0.73157	111.1	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59435	0.58358	135.95	3	3	Median	0.87163	0.91709	NaN	1	0	Median	147080000	89580000	57501000	0	0	0	0	0	0	78064000	52132000	25932000	69016000	37448000	31569000	51461	1650	48451	311057;311058;311059;311060;311061	418590;418591;418592;418593;418594	418594	1670		5	
TPEEIRK	1	Unmodified	871.47633	0.47633123	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	2.25	0.433		3	1							1	1	1	1	6.1652	5.9292	3	0.016207	3613	160511_QHF_FH_JSI12i_3	36.701	0			0.78762	0.80319	10.457	4	0	Median	0.80909	0.69595	NaN	1	0	Median	0.72245	0.88964	NaN	1	0	Median	0.81053	0.83051	NaN	1	0	Median	0.76672	0.77676	NaN	1	0	Median	1851600000	992820000	858780000	293580000	131070000	162520000	344550000	222580000	121970000	477980000	226140000	251840000	735480000	413030000	322450000	51462	2057	48452	311062;311063;311064;311065	418595	418595			1	
TPEELFHPLGADSQV	0	Unmodified	1638.789	0.78895118	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	71.109	70.477	2	2.9896E-05	61763	160511_QHF_FH_JSI11i_2	103.46	92.242			1.0537	1.0684	6.6501	6	0	Median	1.3426	1.1364	2.9815	2	0	Median	0.85028	1.0137	8.2245	2	0	Median	1.0537	1.0458	2.2458	2	0	Median	NaN	NaN	NaN	0	0	Median	782350000	374450000	407890000	196320000	82418000	113910000	281470000	145670000	135800000	304550000	146360000	158190000	0	0	0	51463	986	48453	311066;311067;311068;311069;311070;311071;311072	418596;418597;418598;418599;418600;418601;418602;418603;418604;418605;418606;418607	418606			12	
TPEEYPESAK	1	Unmodified	1149.519	0.51898391	603	O94760	DDAH1	N(G),N(G)-dimethylarginine dimethylaminohydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.259	13.817	2	0.0079688	11101	160511_QHF_FH_JSI11i_1	50.805	35.423			1.0891	0.978	6.3127	4	0	Linear	1.1591	0.95198	NaN	1	0	Median	0.88309	1.0646	NaN	1	0	Median	0.94901	0.92207	NaN	1	0	Median	0.97606	1.0047	NaN	1	0	Median	368630000	189630000	179000000	100510000	48983000	51529000	79360000	39890000	39470000	89873000	44376000	45497000	98887000	56378000	42509000	51464	603	48454	311073;311074;311075;311076	418608;418609;418610;418611;418612;418613	418608			6	
TPEFLRK	1	Unmodified	889.50215	0.50215205	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							1	4	2		21.152	20.065	3	0.0023188	16151	160511_QHF_FH_JSI9i_3	78.616	50.509			1.0441	1.1821	41.859	3	1	Median	0.8418	0.66599	NaN	1	0	Median	1.1363	1.3335	17.044	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	983540000	480360000	503180000	462730000	228710000	234010000	520810000	251640000	269170000	0	0	0	0	0	0	51465	1284	48455	311077;311078;311079;311080;311081;311082;311083	418614;418615;418616;418617;418618;418619;418620;418621;418622;418623;418624;418625	418621			12	
TPEILTVNSIGQLK	1	Unmodified	1511.8559	0.85590853	3656	Q8NFH3	NUP43	Nucleoporin Nup43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.499	6	7								2	3	4	4	76.17	75.529	2;3	4.7747E-05	65285	160511_QHF_FH_JSI12i_2	77.062	50.944			1.0246	1.0429	15.958	12	1	Median	1.2613	1.0459	6.8584	2	0	Median	0.9858	1.1989	25.086	3	1	Plateau	1.0547	1.0429	5.1932	4	0	Median	0.9848	1.0509	20.958	3	0	Median	379740000	189310000	190430000	49107000	22447000	26661000	100600000	52581000	48021000	136780000	69533000	67247000	93249000	44753000	48496000	51466	3656	48456	311084;311085;311086;311087;311088;311089;311090;311091;311092;311093;311094;311095;311096	418626;418627;418628;418629;418630;418631;418632;418633;418634;418635;418636;418637;418638;418639;418640;418641;418642;418643	418630			16	
TPEKQLLETLK	2	Acetyl (K)	1340.7551	0.75513185	5372	Q9UKL3	CASP8AP2	CASP8-associated protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.3	0.471							2	1			1	1	1	74.576	63.924	2	0.001887	34025	160513_QHF_FH_JSI10Kac_4	78.903	54.813			0.99535	1.1926	12.329	3	0	Median	NaN	NaN	NaN	0	0	Median	0.99535	1.1926	NaN	1	0	Median	1.211	1.2013	NaN	1	0	Median	0.89064	0.96685	NaN	1	0	Median	67980000	34679000	33301000	0	0	0	46613000	24435000	22178000	18395000	8599300	9795500	2971900	1644400	1327400	51467	5372	48457	311097;311098;311099	418644	418644	3374		1	
TPELNLDQFHDK	1	Unmodified	1455.6994	0.69940789	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.39	5.12	10	12	7				2	5		7	7	9	13	53.731	50.433	2;3	2.0149E-16	43420	160511_QHF_FH_JSI11i_2	158.58	137.35			1.0871	1.0162	19.697	28	3	Median	1.1528	0.95815	6.6435	6	0	Median	0.76814	0.93075	6.5108	6	0	Median	1.099	1.0644	8.9384	6	2	Median	1.1033	1.2215	23.695	10	1	Median	12818000000	6361500000	6456300000	2534400000	1243700000	1290700000	2278000000	1274300000	1003700000	3559700000	1735200000	1824500000	4445800000	2108400000	2337400000	51468	1299	48458	311100;311101;311102;311103;311104;311105;311106;311107;311108;311109;311110;311111;311112;311113;311114;311115;311116;311117;311118;311119;311120;311121;311122;311123;311124;311125;311126;311127;311128;311129;311130;311131;311132;311133;311134;311135	418645;418646;418647;418648;418649;418650;418651;418652;418653;418654;418655;418656;418657;418658;418659;418660;418661;418662;418663;418664;418665;418666;418667;418668;418669;418670;418671;418672;418673;418674;418675;418676;418677;418678;418679;418680;418681;418682;418683;418684;418685;418686;418687;418688;418689;418690;418691;418692;418693;418694;418695;418696;418697;418698;418699;418700;418701;418702;418703;418704;418705;418706;418707;418708;418709;418710;418711;418712;418713;418714;418715;418716;418717;418718;418719;418720;418721;418722;418723;418724;418725;418726;418727;418728;418729;418730;418731;418732;418733;418734;418735;418736	418704			92	
TPEPVVPTAPEPHPTTSTDQPVTPK	1	Unmodified	2622.3177	0.31771191	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.182	50.508	3	8.2791E-10	45888	160511_QHF_FH_JSI12i_1	83.31	75.95			1.0469	0.95609	16.164	4	1	Median	1.1236	0.90694	NaN	1	1	Median	0.75047	0.87854	NaN	1	0	Median	1.2944	1.2562	NaN	1	0	Median	0.97539	1.0079	NaN	1	0	Median	210120000	105730000	104390000	49637000	21604000	28034000	42350000	28154000	14196000	59537000	25180000	34357000	58596000	30795000	27802000	51469	2557	48459	311136;311137;311138;311139	418737;418738;418739;418740;418741;418742;418743;418744	418740			8	
TPEQCPSVVSLLSESYNPHVR	0	Unmodified	2398.1587	0.15870885	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.29	0.452		5	2							1		3	3	78.171	77.594	3	2.1991E-08	67214	160511_QHF_FH_JSI12i_3	96.848	92.579			0.92592	0.85238	20.577	6	4	Median	0.98585	0.83044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85778	0.82056	7.7847	3	2	Median	1.141	1.2004	5.0381	2	1	Median	501760000	257640000	244120000	40209000	20401000	19808000	0	0	0	319380000	175110000	144270000	142170000	62123000	80048000	51470	4272	48460	311140;311141;311142;311143;311144;311145;311146	418745;418746;418747;418748;418749;418750;418751;418752	418752			8	
TPEQVAEEEYLLQELRK	1	Unmodified	2074.0582	0.058249746	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	78.417	78.162	3	8.4461E-05	67865	160511_QHF_FH_JSI12i_3	78.234	61.569			0.84939	0.87318	16.046	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84939	0.87318	16.046	2	2	Median	88837000	46879000	41957000	0	0	0	0	0	0	0	0	0	88837000	46879000	41957000	51471	4900	48461	311147;311148	418753;418754;418755	418754			3	
TPEQYYQTFSPSSSHSPAR	0	Unmodified	2168.9763	0.97631103	3281	Q7Z5J4	RAI1	Retinoic acid-induced protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				40.839	39.791	3	0.00099786	34784	160511_QHF_FH_JSI9i_2	50.938	45.96			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51472	3281	48462	311149	418756	418756			1	
TPESIVPIAPELQPSTSR	0	Unmodified	1921.0157	0.015656649	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		75.18	74.928	2	0.010799	68163	160511_QHF_FH_JSI11i_1	60.448	26.562			1.7978	1.7473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7978	1.7473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24796000	11387000	13410000	0	0	0	7375000	7375000	0	17421000	4011700	13410000	0	0	0	51473	2557	48463	311150;311151	418757;418758	418757			2	
TPESSHEGLITDPHSPSR	0	Unmodified	1945.913	0.91298249	1550	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	21.418	21.419	4	0.001298	17536	160511_QHF_FH_JSI12i_3	43.794	34.748			1.2716	1.2315	1.1516	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3574	1.2215	NaN	1	0	Median	1.1912	1.2416	NaN	1	0	Median	88034000	36591000	51443000	0	0	0	0	0	0	47591000	18908000	28683000	40442000	17682000	22760000	51474	1550	48464	311152;311153	418759	418759			1	
TPETVVPTALELQPSTSTDRPVTSEPTSQATR	0	Unmodified	3395.7056	0.70562206	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	68.991	68.485	3	2.4873E-06	62367	160511_QHF_FH_JSI12i_1	43.801	38.589			1.5337	1.5398	34.388	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0426	1.9637	NaN	1	1	Median	1.1517	1.2075	NaN	1	0	Median	74464000	23284000	51180000	0	0	0	0	0	0	36489000	8359800	28129000	37975000	14925000	23051000	51475	2557	48465	311154;311155	418760;418761;418762;418763;418764	418763			5	
TPETVVPTAPELQISTSTDQPVTPKPTSR	1	Unmodified	3076.5928	0.59282414	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	70.656	70.253	3	1.4131E-06	63907	160511_QHF_FH_JSI11i_1	60.419	52.345			0.84041	0.82923	16.034	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.69183	0.7889	NaN	1	1	Median	1.0209	0.98581	NaN	1	1	Median	1.0876	1.0768	NaN	1	1	Median	55792000	29789000	26003000	0	0	0	21516000	16168000	5348300	19349000	6645800	12703000	14928000	6975600	7952000	51476	2557	48466	311156;311157;311158	418765;418766;418767	418765			3	
TPFLGDMAHIR	0	Unmodified	1256.6336	0.63357693	4778	Q9H857	NT5DC2	5'-nucleotidase domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		57.136	57.136	3	0.00075693	50688	160511_QHF_FH_JSI11i_3	58.172	47.343			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51477	4778	48467	311159	418768	418768			1	
TPFLLSGTSYK	1	Unmodified	1212.639	0.63903946	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	61.57	60.702	2	9.4034E-06	51158	160511_QHF_FH_JSI10i_3	108.67	96.712			1.106	1.0751	10.749	8	0	Median	1.2714	1.0659	1.1354	2	0	Median	0.94671	1.117	5.3108	2	0	Median	1.0441	1.0112	11.899	2	0	Median	1.0702	1.1558	20.868	2	0	Median	1895800000	900610000	995200000	277390000	122710000	154680000	387580000	204200000	183370000	610040000	300690000	309340000	620800000	273000000	347800000	51478	1848	48468	311160;311161;311162;311163;311164;311165;311166;311167	418769;418770;418771;418772;418773;418774;418775;418776;418777;418778;418779;418780;418781;418782;418783;418784;418785;418786	418776			18	
TPFLLSGTSYKDLMPHDLAR	1	Acetyl (K)	2303.162	0.16200331	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			1	2	89.475	80.067	3	2.3099E-34	44761	160513_QHF_FH_JSI11Kac_6	164.13	148.19			0.91377	0.8737	121.37	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91377	0.8737	NaN	1	0	Median	0.60174	0.6411	169.77	2	2	Median	297390000	148360000	149030000	0	0	0	0	0	0	126740000	65727000	61014000	170650000	82631000	88021000	51479	1848	48469	311168;311169;311170	418787;418788;418789	418787	1860		3	
TPFLLSGTSYKDLMPHDLAR	1	Acetyl (K);Oxidation (M)	2319.1569	0.15691793	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	1	0	1	1			By MS/MS	By MS/MS	16	0									2			1	1	83.035	73.656	3	2.449E-08	39143	160513_QHF_FH_JSI12Kac_6	103.01	88.992			1.0737	1.0926	31.158	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4265	1.3619	NaN	1	1	Median	0.80817	0.87658	NaN	1	0	Median	39995000	17329000	22665000	0	0	0	0	0	0	18364000	5809500	12554000	21631000	11520000	10111000	51480	1848	48469	311171;311172	418790;418791	418791	1860	1533	2	
TPFLLVGTQIDLR	0	Unmodified	1471.8399	0.83986454	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.52	81.801	2	0.022874	46123	160513_QHF_FH_JSI10Kac_6	45.257	29.366			1.0192	1.2023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0192	1.2023	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71191000	34027000	37164000	0	0	0	71191000	34027000	37164000	0	0	0	0	0	0	51481	1924	48470	311173	418792	418792			1	
TPFLLVGTQIDLRDDPSTIEK	1	Unmodified	2357.2478	0.24784143	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	2	2	1		90.107	86.843	2;3	3.9057E-08	44385	160513_QHF_FH_JSI10Kac_6	89.483	74.708			0.98214	0.91623	19.051	5	2	Median	1.3334	1.1192	32.171	2	1	Median	0.82306	0.94773	4.781	2	1	Median	0.98214	0.91234	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	300260000	165140000	135110000	73327000	31308000	42019000	206860000	123220000	83641000	20066000	10611000	9454700	0	0	0	51482	1924	48471	311174;311175;311176;311177;311178	418793;418794;418795;418796;418797;418798;418799;418800	418800			8	
TPGGVFLNLLK	1	Unmodified	1157.6808	0.6808447	4774	Q9H814	PHAX	Phosphorylated adapter RNA export protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	89.68	89.106	2	1.6838E-07	73068	160511_QHF_FH_JSI9i_3	123.35	88.968			0.97839	0.96248	1.8791	4	0	Median	1.1586	0.95111	NaN	1	0	Median	0.80051	0.97397	NaN	1	0	Median	1.0416	0.98611	NaN	1	0	Median	0.919	0.94855	NaN	1	0	Median	434550000	207660000	226900000	107840000	50015000	57823000	81854000	44117000	37737000	108960000	48361000	60601000	135900000	65166000	70734000	51483	4774	48472	311179;311180;311181;311182	418801;418802;418803;418804;418805;418806;418807	418805			7	
TPGPGAQSALR	0	Unmodified	1053.5567	0.55670682	1991	P62263	RPS14	40S ribosomal protein S14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							2	3	3	3	17.326	16.798	2	0.00073206	13272	160511_QHF_FH_JSI12i_3	68.847	41.71			0.98204	1.023	6.0048	11	0	Median	1.2469	1.0427	2.6955	2	0	Median	0.88753	1.026	8.6957	3	0	Plateau	0.97308	1.0185	3.9963	3	0	Plateau	0.97324	0.98177	0.73092	3	0	Plateau	8454300000	4277900000	4176400000	1531700000	707630000	824080000	2041600000	1084800000	956830000	2616000000	1319700000	1296200000	2265100000	1165800000	1099200000	51484	1991	48473	311183;311184;311185;311186;311187;311188;311189;311190;311191;311192;311193	418808;418809;418810;418811;418812;418813;418814;418815;418816;418817;418818;418819;418820;418821;418822;418823;418824;418825;418826;418827;418828;418829;418830	418827			23	
TPGTGSLAAAVETASGR	0	Unmodified	1544.7794	0.77944912	4087	Q96GD0	PDXP	Pyridoxal phosphate phosphatase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				57.41	56.401	3	0.0093274	49507	160511_QHF_FH_JSI9i_2	34.748	26.149			1.3877	1.1904	NaN	1	0	Median	1.3877	1.1904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20247000	9656400	10591000	20247000	9656400	10591000	0	0	0	0	0	0	0	0	0	51485	4087	48474	311194	418831	418831			0	
TPGTWNHITDQIGMFSFTGLNPK	1	Oxidation (M)	2577.2322	0.23220814	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		96.509	96.088	3	3.561E-05	78559	160511_QHF_FH_JSI9i_3	56.882	53.874			0.81374	1.0366	16.637	4	2	Linear	1.4196	1.1807	NaN	1	1	Median	0.91474	1.0433	19.331	2	1	Median	0.91602	0.87475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88648000	42852000	45796000	13107000	5010700	8096500	45777000	20371000	25406000	29764000	17471000	12293000	0	0	0	51486	1111	48475	311195;311196;311197;311198	418832;418833;418834;418835;418836	418836		747	5	
TPGTWNHITDQIGMFSFTGLNPK	1	Unmodified	2561.2373	0.23729352	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	1	3	2	95.336	91.164	3	1.0695E-38	45027	160513_QHF_FH_JSI9Kac_6	173.47	160.15			0.99373	0.97227	11.058	8	2	Median	1.2657	1.0436	5.8288	2	0	Median	0.8287	0.99626	NaN	1	0	Median	0.97908	0.92134	9.3455	3	2	Median	0.91244	0.94372	17.431	2	0	Median	3255800000	1676500000	1579300000	367270000	163530000	203740000	264990000	144740000	120250000	1933300000	984440000	948860000	690210000	383750000	306460000	51487	1111	48475	311199;311200;311201;311202;311203;311204;311205;311206	418837;418838;418839;418840;418841;418842;418843;418844;418845;418846;418847;418848;418849;418850;418851	418843			15	
TPGYVVTPHTMNLLK	1	Unmodified	1669.8862	0.8861628	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							2	4	4	4	62.218	61.495	2;3	1.2148E-11	54353	160511_QHF_FH_JSI11i_3	109.24	75.37			0.82527	0.87844	15.972	10	6	Median	1.0044	0.88216	NaN	1	1	Median	0.75266	0.90001	13.43	2	1	Median	0.78441	0.98679	15.67	3	1	Plateau	0.9233	0.98659	20.238	4	3	Median	1758500000	918610000	839870000	135570000	65950000	69617000	247630000	133230000	114400000	534750000	263960000	270790000	840540000	455470000	385060000	51488	1609	48476	311207;311208;311209;311210;311211;311212;311213;311214;311215;311216;311217;311218;311219;311220	418852;418853;418854;418855;418856;418857;418858;418859;418860;418861;418862;418863;418864;418865;418866;418867;418868;418869;418870;418871;418872;418873;418874	418858			22	
TPGYVVTPHTMNLLK	1	Oxidation (M)	1685.8811	0.88107742	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	49.048	48.929	3	0.0081447	41840	160511_QHF_FH_JSI12i_3	40.547	6.3684			1.0897	1.0603	26.592	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95034	0.87853	NaN	1	0	Median	1.2494	1.2796	NaN	1	0	Median	110510000	52215000	58299000	0	0	0	0	0	0	43862000	26374000	17488000	66652000	25841000	40811000	51489	1609	48476	311221;311222	418875	418875		1286	1	
TPHPVLTPVAANQAK	1	Unmodified	1542.8518	0.85182621	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	31.157	30.742	2;3	6.1324E-08	25882	160511_QHF_FH_JSI12i_3	121.24	114.33			0.85009	0.86598	18.217	6	1	Median	1.0582	0.90112	NaN	1	0	Median	0.629	0.75865	NaN	1	0	Median	0.78804	0.77691	37.269	2	1	Median	0.85009	0.86598	1.8914	2	0	Median	536780000	293480000	243300000	60295000	30211000	30084000	57006000	34631000	22375000	46364000	25448000	20915000	373120000	203190000	169930000	51490	1443	48477	311223;311224;311225;311226;311227;311228	418876;418877;418878;418879;418880	418880			5	
TPHTATLR	0	Unmodified	895.48756	0.48756462	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			6.3944	5.8892	2;3	0.00047767	3922	160511_QHF_FH_JSI10i_3	76.064	53.045			0.99085	1.1311	8.2868	3	0	Plateau	1.6088	1.307	NaN	1	0	Median	0.97752	1.1323	0.14641	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	802140000	387870000	414270000	110450000	40695000	69755000	691690000	347170000	344520000	0	0	0	0	0	0	51491	1519	48478	311229;311230;311231	418881;418882;418883	418882			3	
TPHVLVLGSGVYR	0	Unmodified	1396.7827	0.78268401	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	3	2	3	2	58.839	50.798	2;3	6.6811E-10	27709	160513_QHF_FH_JSI11Kac_6	95.417	84.158			0.72815	0.85223	30.487	7	2	Median	0.85933	0.71577	21.137	3	1	Median	0.72404	0.8573	0.83931	2	0	Median	0.44788	0.41972	NaN	1	1	Median	0.94137	1.0214	NaN	1	0	Median	746810000	461000000	285800000	118950000	67052000	51897000	402760000	236220000	166540000	199540000	141740000	57796000	25563000	15992000	9570800	51492	1296	48479	311232;311233;311234;311235;311236;311237;311238;311239;311240;311241	418884;418885;418886;418887;418888;418889;418890;418891;418892;418893	418886			10	
TPIAAGHPSMNLLLR	0	Unmodified	1589.8712	0.87118144	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		63.776	62.269	2;3	1.3077E-06	52193	160511_QHF_FH_JSI10i_3	114.69	107.15			0.9129	0.98724	10.069	4	0	Linear	1.163	0.93355	11.948	2	0	Median	0.74223	0.84948	8.5052	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	680400000	341330000	339060000	433440000	203600000	229840000	246960000	137740000	109220000	0	0	0	0	0	0	51493	1698	48480	311242;311243;311244;311245;311246	418894;418895;418896;418897;418898;418899;418900;418901;418902	418896			9	
TPIGKPATAK	2	Unmodified	982.58113	0.58113065	265	O15228	GNPAT	Dihydroxyacetone phosphate acyltransferase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			9.8491	9.2609	3	0.048498	7016	160511_QHF_FH_JSI10i_3	31.185	27.614			1.5522	1.7654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5522	1.7654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34208000	19564000	14644000	0	0	0	34208000	19564000	14644000	0	0	0	0	0	0	51494	265	48481	311247	418903	418903			1	
TPIGSFLGSLSLLPATK	1	Unmodified	1700.9713	0.97127264	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.29		1	8						5	4	5	3	2	99.368	96.542	2;3	4.4996E-66	88501	160511_QHF_FH_JSI12i_3	236.92	218.17			0.91865	0.99418	8.1437	14	0	Median	1.2508	1.0345	4.2265	4	0	Median	0.85395	0.96672	9.2242	5	0	Median	1.0759	1.0141	10.232	3	0	Plateau	0.89348	0.92642	5.4025	2	0	Median	18180000000	9311800000	8867900000	3770700000	1650400000	2120300000	4540300000	2442900000	2097400000	4157200000	2027600000	2129600000	5711500000	3190800000	2520700000	51495	1249	48482	311248;311249;311250;311251;311252;311253;311254;311255;311256;311257;311258;311259;311260;311261	418904;418905;418906;418907;418908;418909;418910;418911;418912;418913;418914;418915;418916;418917;418918;418919;418920;418921;418922;418923;418924;418925;418926;418927;418928;418929	418926			26	
TPIGTPAMNMATPTPGHIMSMTPEQLQAWR	0	Unmodified	3264.5552	0.55521531	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	98.303	98.223	3;4	5.7642E-28	86098	160511_QHF_FH_JSI9i_2	125.52	119.86			1.0894	1.3338	20.766	6	0	Linear	1.4648	1.2403	NaN	1	0	Median	0.67542	0.81092	20.936	2	0	Median	1.1891	1.1137	8.9857	2	0	Median	1.047	1.0934	NaN	1	0	Median	255740000	121150000	134580000	70583000	29578000	41005000	48054000	26025000	22029000	88091000	40360000	47731000	49012000	25192000	23820000	51496	542	48483	311262;311263;311264;311265;311266;311267	418930;418931;418932;418933;418934;418935;418936;418937;418938	418935			9	
TPIIIIPAATTSLITMLNAK	1	Unmodified	2081.217	0.21699899	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		2	8						2	3	3	4	2	102.31	100.7	2;3	4.1665E-54	89717	160511_QHF_FH_JSI12i_3	212.87	194.14			0.89423	0.86251	10.704	11	2	Median	1.1162	0.92264	10.535	2	0	Median	0.75107	0.87417	13.595	3	1	Median	0.90454	0.84874	5.2741	4	1	Median	0.90844	0.92227	21.764	2	0	Median	1378800000	690250000	688600000	254520000	134410000	120110000	129670000	72990000	56676000	514750000	258410000	256340000	479910000	224440000	255470000	51497	3090	48484	311268;311269;311270;311271;311272;311273;311274;311275;311276;311277;311278;311279	418939;418940;418941;418942;418943;418944;418945;418946;418947;418948;418949;418950;418951;418952;418953	418953			14	
TPIIWFHVVPAANK	1	Unmodified	1591.8875	0.88748343	3739	Q8TEW0	PARD3	Partitioning defective 3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	80.958	76.017	3	1.4726E-07	40626	160513_QHF_FH_JSI10Kac_6	107.14	97.482			1.1293	1.0121	12.005	7	0	Median	1.167	0.97042	5.9425	2	0	Median	0.89271	1.0728	NaN	1	0	Median	1.1399	1.0877	19.706	2	0	Median	1.0407	1.0697	16.782	2	0	Median	1022500000	454160000	568310000	248960000	94662000	154300000	301920000	156110000	145810000	288250000	110650000	177600000	183330000	92734000	90596000	51498	3739	48485	311280;311281;311282;311283;311284;311285;311286	418954;418955;418956;418957;418958;418959;418960;418961;418962;418963;418964	418964			9	
TPIPTSLR	0	Unmodified	883.51272	0.51271674	3091	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	36.869	36.329	2	0.058096	31840	160511_QHF_FH_JSI11i_3	35.494	11.97			1.1251	1.0676	6.1793	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95851	1.0676	NaN	1	0	Median	1.0915	1.0024	NaN	1	0	Median	1.1294	1.1343	NaN	1	0	Median	177770000	79034000	98740000	0	0	0	20977000	10672000	10306000	69526000	32518000	37007000	87270000	35844000	51427000	51499	3091	48486	311287;311288;311289	418965	418965			1	
TPISEHAVFNVDLMSK	1	Unmodified	1786.8924	0.89237039	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	2	1	1	71.188	70.621	2;3	2.7627E-05	61899	160511_QHF_FH_JSI11i_2	83.418	75.033			1.2907	1.3343	16.925	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7845	0.97627	NaN	1	0	Median	1.0306	1.0344	NaN	1	0	Median	1.2907	1.3414	NaN	1	0	Median	442880000	205340000	237540000	0	0	0	109330000	59862000	49466000	129920000	69222000	60702000	203630000	76255000	127370000	51500	5215	48487	311290;311291;311292;311293;311294	418966;418967;418968;418969;418970;418971	418967			6	
TPIVGQPSIPGGPVR	0	Unmodified	1473.8304	0.83036248	55	CON__P12763			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.88	4.91	8	3	2				3			3	3	5	5	59.508	56.962	2;3	0.00010364	51951	160511_QHF_FH_JSI12i_1	134.75	120.06		+	0.81792	0.84187	20.071	16	3	Median	1.0067	0.85744	8.222	3	2	Median	0.70569	0.82372	14.796	3	0	Median	0.79653	0.80516	26.71	5	1	Median	0.84659	0.88906	19.694	5	0	Median	1631500000	830070000	801400000	264300000	126520000	137780000	227860000	130300000	97553000	629190000	303100000	326090000	510130000	270150000	239970000	51501	55	48488	311295;311296;311297;311298;311299;311300;311301;311302;311303;311304;311305;311306;311307;311308;311309;311310	418972;418973;418974;418975;418976;418977;418978;418979;418980;418981;418982;418983;418984;418985;418986;418987;418988;418989	418978			18	
TPLAGPNIDYPVLYGK	1	Unmodified	1716.9087	0.90867238	3511	Q8N2W9	PIAS4	E3 SUMO-protein ligase PIAS4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	80.817	80.299	2	0.0014171	73049	160511_QHF_FH_JSI11i_1	59.57	37.037			0.41965	0.42272	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41965	0.42272	NaN	1	0	Median	17573000	11186000	6386700	0	0	0	0	0	0	0	0	0	17573000	11186000	6386700	51502	3511	48489	311311;311312	418990;418991	418990			2	
TPLFDQIIDMLR	0	Unmodified	1460.7697	0.76973606	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		3	1							1		1	2	102.74	102.65	2	0.035778	89582	160511_QHF_FH_JSI12i_3	51.436	40.272			0.80837	0.78029	22.503	4	2	Median	0.90846	0.78035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7193	0.72032	NaN	1	1	Median	0.90001	0.96117	29.495	2	0	Median	441650000	225530000	216120000	41370000	22401000	18969000	0	0	0	73209000	41276000	31933000	327070000	161850000	165220000	51503	1837	48490	311313;311314;311315;311316	418992;418993;418994	418994			3	
TPLGASLDEQSSSTLK	1	Unmodified	1632.8206	0.82064524	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.24	46.581	2	0.00027569	42256	160511_QHF_FH_JSI12i_1	85.845	66.083			0.92308	0.92728	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92308	0.92728	NaN	1	1	Median	27861000	19003000	8858200	0	0	0	0	0	0	0	0	0	27861000	19003000	8858200	51504	1305	48491	311317	418995	418995			1	
TPLGELNWIFTAITDTIAWNVLPR	0	Unmodified	2740.4588	0.45883726	3497	Q8N122	RPTOR	Regulatory-associated protein of mTOR	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.78	100.06	3	1.5513E-22	59289	160513_QHF_FH_JSI10Kac_6	130.83	118.4			1.2042	1.4094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2042	1.4094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69548000	34045000	35503000	0	0	0	69548000	34045000	35503000	0	0	0	0	0	0	51505	3497	48492	311318	418996	418996			1	
TPLGGIHISQTK	1	Unmodified	1250.6983	0.69828568	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	34.412	33.997	2	0.00071426	29605	160511_QHF_FH_JSI11i_3	68.355	44.134			1.0563	1.108	53.84	4	1	Median	NaN	NaN	NaN	0	0	Median	1.2052	1.4082	NaN	1	0	Median	0.92569	0.88684	NaN	1	0	Median	0.79351	0.78646	79.955	2	1	Median	187050000	96652000	90395000	0	0	0	27681000	13090000	14590000	55434000	29686000	25748000	103930000	53876000	50056000	51506	5202	48493	311319;311320;311321;311322	418997;418998;418999;419000	418998			4	
TPLHEIALSIK	1	Unmodified	1220.7129	0.71287311	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.58	3.77		6	5						1	1	3	3	5	55.234	53.731	2;3	1.3213E-07	45886	160511_QHF_FH_JSI12i_3	98.105	88.45			2.1614	2.2998	38.097	12	1	Linear	0.87961	0.77378	NaN	1	0	Median	1.1953	1.4568	30.943	3	0	Plateau	1.3504	1.3106	56.718	3	0	Median	0.88973	1.3034	15.092	5	1	Linear	2452300000	1235800000	1216500000	99978000	66978000	33001000	283560000	166080000	117480000	946300000	404850000	541450000	1122400000	597870000	524570000	51507	2265	48494	311323;311324;311325;311326;311327;311328;311329;311330;311331;311332;311333;311334	419001;419002;419003;419004;419005;419006;419007;419008;419009;419010;419011;419012;419013	419011			13	
TPLHLAKSK	2	Acetyl (K)	1035.6077	0.60767975	3081	Q6NXT1	ANKRD54	Ankyrin repeat domain-containing protein 54	yes	yes	1	0	0	1	By matching	By matching	By MS/MS		15.7	0.471								1	2	1	1	1		32.345	23.36	3	0.0064077	13140	160513_QHF_FH_JSI11Kac_6	46.706	38.781			0.85129	0.81874	8.9876	3	0	Plateau	1.1473	0.95674	NaN	1	0	Median	0.69488	0.82864	NaN	1	0	Median	0.85129	0.81095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36975000	21682000	15293000	1144700	659010	485640	17589000	11390000	6199300	18241000	9633300	8607700	0	0	0	51508	3081	48495	311335;311336;311337	419014	419014	2765		1	
TPLLDEEEEENPDK	1	Unmodified	1656.7366	0.73664084	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.66	41.174	2	0.0037427	37102	160511_QHF_FH_JSI11i_1	63.944	48.678			1.8297	1.8027	3.9354	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9329	1.8536	NaN	1	1	Median	1.732	1.7532	NaN	1	1	Median	60819000	16677000	44143000	0	0	0	0	0	0	32252000	8149600	24102000	28568000	8526900	20041000	51509	1239	48496	311338;311339	419015;419016	419015			2	
TPLLLMLGQEDR	0	Unmodified	1384.7384	0.73843593	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	2	2	3	87.11	86.473	2	0.00025669	74900	160511_QHF_FH_JSI12i_3	76.927	58.488			0.66049	0.72803	36.508	8	3	Median	0.93094	0.77555	66.956	2	2	Median	0.7002	0.82074	26.104	2	0	Median	0.72284	0.71332	45.254	2	1	Median	0.58576	0.61188	33.734	2	0	Median	906480000	497740000	408740000	128390000	71343000	57049000	185790000	110070000	75725000	318070000	178620000	139440000	274220000	137710000	136520000	51510	1040	48497	311340;311341;311342;311343;311344;311345;311346;311347;311348	419017;419018;419019;419020;419021;419022;419023;419024;419025;419026;419027;419028;419029;419030	419027			14	
TPLPPELADVQA	0	Unmodified	1249.6554	0.65541781	5683	Q9Y5V0	ZNF706	Zinc finger protein 706	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	77.79	77.315	2	0.00023442	68783	160511_QHF_FH_JSI9i_1	78.334	72.373			1.5112	1.4908	21.476	4	0	Median	1.5025	1.2348	NaN	1	0	Median	1.2006	1.4076	NaN	1	0	Median	2.1092	2.0466	NaN	1	0	Median	1.5198	1.579	NaN	1	0	Median	579650000	218500000	361160000	122410000	49932000	72477000	159310000	71584000	87728000	146850000	48611000	98243000	151080000	48371000	102710000	51511	5683	48498	311349;311350;311351;311352;311353	419031;419032;419033;419034;419035;419036	419035			6	
TPLQGILQLGQELKPK	2	Unmodified	1762.0353	0.035269879	481	O75146	HIP1R	Huntingtin-interacting protein 1-related protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	92.408	91.886	3	1.603E-06	81779	160511_QHF_FH_JSI11i_3	119.23	109.98			0.84798	0.85819	27.933	4	4	Median	1.113	0.88792	NaN	1	1	Median	0.80975	0.94974	NaN	1	1	Median	0.88801	0.82946	NaN	1	1	Median	0.47784	0.51337	NaN	1	1	Median	127340000	79312000	48027000	29856000	15999000	13857000	27015000	15340000	11675000	50633000	33293000	17340000	19835000	14680000	5155000	51512	481	48499	311354;311355;311356;311357	419037;419038;419039;419040;419041	419037			5	
TPLSEAEFEEIMNR	0	Unmodified	1664.7716	0.77158655	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.479	5	9								3	3	4	4	80.645	80.013	2;3	3.1075E-21	69115	160511_QHF_FH_JSI12i_2	171.05	159.84			1.0236	1.0636	10.113	14	5	Median	1.2236	1.0472	10.137	3	2	Plateau	0.8403	1.0191	4.3143	3	1	Plateau	1.075	1.089	7.4119	4	1	Median	0.99222	1.1065	17.09	4	1	Median	1057000000	519910000	537110000	192800000	82572000	110230000	163000000	89204000	73796000	423710000	205060000	218650000	277510000	143070000	134440000	51513	2746	48500	311358;311359;311360;311361;311362;311363;311364;311365;311366;311367;311368;311369;311370;311371	419042;419043;419044;419045;419046;419047;419048;419049;419050;419051;419052;419053;419054;419055;419056;419057;419058;419059	419046			18	
TPLSTGGTLAFVSPSLAVHK	1	Unmodified	1982.0837	0.083676635	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	78.302	77.749	3	4.1403E-10	69487	160511_QHF_FH_JSI11i_3	114.03	88.71			0.97949	0.95655	2.568	3	0	Plateau	1.1504	0.92522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0482	0.97316	NaN	1	0	Median	0.938	0.95655	NaN	1	0	Median	380080000	188540000	191540000	24855000	9048300	15806000	0	0	0	156750000	91680000	65074000	198470000	87808000	110660000	51514	3386	48501	311372;311373;311374	419060;419061;419062;419063;419064;419065	419061			6	
TPLTHALPGLSEQEGQK	1	Unmodified	1804.9319	0.93192702	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48.665	48.505	3	0.00021189	41514	160511_QHF_FH_JSI12i_3	71.685	60.831			0.94022	0.9167	9.102	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94022	0.87062	NaN	1	1	Median	0.96243	0.97602	8.8672	2	2	Median	282390000	164210000	118180000	0	0	0	0	0	0	72706000	41826000	30881000	209680000	122390000	87296000	51515	1419	48502	311375;311376;311377	419066;419067;419068	419068			3	
TPLTSADEHVHSK	1	Unmodified	1420.6947	0.69465686	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	11.288	11.378	3	0.026962	8633	160511_QHF_FH_JSI12i_3	34.302	16.935			0.83227	0.83126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83227	0.83126	NaN	1	1	Median	28105000	18217000	9887700	0	0	0	0	0	0	0	0	0	28105000	18217000	9887700	51516	2928	48503	311378	419069	419069			1	
TPLVNESLKK	2	Unmodified	1127.655	0.65502388	716	O95684	FGFR1OP	FGFR1 oncogene partner	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	25.664	25.633	3	0.045362	21365	160511_QHF_FH_JSI12i_3	26.274	18.664			1.0398	1.0629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0398	1.0629	NaN	1	1	Median	68211000	30060000	38151000	0	0	0	0	0	0	0	0	0	68211000	30060000	38151000	51517	716	48504	311379	419070	419070			1	
TPLVSVLLEGPPHSGK	1	Unmodified	1629.909	0.90900673	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			77.531	76.132	3	0.00025309	63773	160511_QHF_FH_JSI10i_3	57.525	51.865			0.67932	0.80368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67932	0.80368	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19257000	11940000	7317300	0	0	0	19257000	11940000	7317300	0	0	0	0	0	0	51518	1586	48505	311380	419071	419071			1	
TPLYLQPDAYGSLDR	0	Unmodified	1707.8468	0.84680041	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.386	70.855	2	7.205E-05	64160	160511_QHF_FH_JSI10i_1	114.82	90.833			0.86589	0.92381	16.825	4	1	Median	1.4455	1.173	NaN	1	0	Median	0.86608	1.0176	NaN	1	1	Median	0.86569	0.82404	NaN	1	0	Median	0.8203	0.83864	NaN	1	0	Median	309790000	161000000	148800000	82356000	36115000	46241000	88382000	49593000	38789000	72426000	38317000	34109000	66629000	36971000	29657000	51519	3760	48506	311381;311382;311383;311384	419072;419073;419074;419075	419075			4	
TPMENIGLQDSLLSR	0	Unmodified	1672.8454	0.8454202	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	74.027	73.329	2	6.7828E-30	65129	160511_QHF_FH_JSI10i_2	191.05	173.19			0.98555	1.0245	6.2715	9	2	Median	1.2086	1.0388	1.2533	3	2	Plateau	0.75848	0.91757	4.4961	2	0	Median	0.97783	0.97503	0.77105	2	0	Median	0.99075	1.0597	4.602	2	0	Median	1658000000	863480000	794490000	383960000	191970000	191990000	425990000	240890000	185100000	475610000	252360000	223240000	372410000	178250000	194160000	51520	1254	48507	311385;311386;311387;311388;311389;311390;311391;311392;311393	419076;419077;419078;419079;419080;419081;419082;419083;419084;419085;419086;419087;419088;419089	419089			14	
TPMIAGGLFVMDK	1	Unmodified	1378.6989	0.6988793	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89		5	4						3	3	2	4	3	86.422	83.669	2;3	0.00016683	74974	160511_QHF_FH_JSI12i_3	82.85	73.892			0.99449	1.0051	13.15	12	3	Median	1.2742	1.0541	5.4979	3	2	Median	0.80253	0.95429	4.7186	2	0	Median	0.99449	0.99271	14.431	4	1	Median	0.8475	0.96315	21.6	3	0	Median	927300000	460680000	466620000	172810000	82460000	90347000	148750000	86099000	62655000	352420000	171530000	180890000	253320000	120600000	132720000	51521	2294	48508	311394;311395;311396;311397;311398;311399;311400;311401;311402;311403;311404;311405	419090;419091;419092;419093;419094;419095;419096;419097;419098;419099;419100;419101;419102;419103;419104;419105	419105			16	
TPMPPISSVLLAFSVLGELHSK	1	Unmodified	2322.2657	0.2657401	316	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	101.23	95.605	3	7.3837E-48	55283	160513_QHF_FH_JSI10Kac_6	180.13	171.53			0.8836	0.87676	7.2918	6	1	Median	1.04	0.88059	NaN	1	0	Median	0.72569	0.87295	NaN	1	0	Median	0.90691	0.84838	8.2787	2	0	Median	0.83023	0.89407	12.993	2	1	Median	842630000	448030000	394600000	161140000	80284000	80856000	148330000	86648000	61683000	384950000	204830000	180110000	148210000	76265000	71947000	51522	316	48509	311406;311407;311408;311409;311410;311411	419106;419107;419108;419109;419110;419111;419112;419113;419114;419115;419116	419116			11	
TPMSVLQQAGGSMMDGPGPR	0	Unmodified	2015.9227	0.92270102	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							2		2	1	70.862	70.339	2;3	2.1848E-05	61078	160511_QHF_FH_JSI12i_3	64.723	54.666			1.1695	1.147	31.045	4	0	Median	2.0544	1.7164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1695	1.147	1.9363	2	0	Median	0.79595	0.80331	NaN	1	0	Median	165850000	67407000	98442000	70927000	20075000	50852000	0	0	0	59379000	29564000	29815000	35543000	17768000	17775000	51523	5474	48510	311412;311413;311414;311415;311416	419117;419118;419119;419120	419120			4	
TPMTSQK	1	Unmodified	791.38474	0.38473903	2770	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.326	5.0106	2	0.020108	2888	160511_QHF_FH_JSI11i_1	57.281	40.354			0.67924	0.82557	20.03	4	0	Linear	1.0007	0.81942	NaN	1	0	Median	0.70915	0.83177	NaN	1	0	Median	1.2532	1.2056	NaN	1	0	Median	0.73441	0.78124	NaN	1	0	Median	3191400000	1735100000	1456300000	700800000	310950000	389850000	989110000	585070000	404040000	604580000	259700000	344880000	896920000	579420000	317510000	51524	2770	48511	311417;311418;311419;311420	419121;419122	419121			2	
TPMYGSQTPLQDGSR	0	Unmodified	1636.7515	0.75151981	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	38.213	37.306	2	6.8039E-05	33806	160511_QHF_FH_JSI12i_1	74.987	60.829			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51525	116	48512	311421;311422	419123;419124	419123			2	
TPMYGSQTPMYGSGSR	0	Unmodified	1718.7392	0.73924057	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	38.808	38.082	2	0.00010486	34114	160511_QHF_FH_JSI10i_1	84.297	73.372			0.98709	1.1211	6.2716	7	0	Median	1.3097	1.1211	NaN	1	0	Median	0.91402	1.1116	6.7468	2	0	Median	1.0935	1.1027	9.9266	2	0	Median	1.0125	1.089	9.2119	2	0	Median	249010000	130360000	118650000	24731000	11152000	13579000	83062000	51654000	31408000	90924000	45053000	45870000	50291000	22500000	27791000	51526	116	48513	311423;311424;311425;311426;311427;311428;311429	419125;419126;419127;419128;419129;419130;419131;419132;419133;419134;419135;419136	419130			12	
TPNFPSSVLFMK	1	Unmodified	1366.6955	0.69550848	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	83.996	83.9	2	0.0055916	74738	160511_QHF_FH_JSI11i_3	62.303	51.151			0.6016	0.58272	60.899	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40718	0.37883	NaN	1	1	Median	0.88885	0.89634	NaN	1	1	Median	176040000	117040000	58999000	0	0	0	0	0	0	100510000	78170000	22341000	75532000	38874000	36658000	51527	5161	48514	311430;311431	419137;419138;419139	419137			3	
TPNNVVSTPAPSPDASQLASSLSSQK	1	Unmodified	2582.2824	0.28238904	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	68.087	67.626	3	1.187E-05	61187	160511_QHF_FH_JSI10i_1	53.262	38.172			0.72637	0.81157	55.715	2	1	Median	NaN	NaN	NaN	0	0	Median	0.46714	0.54731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1294	1.2034	NaN	1	1	Median	64150000	42200000	21950000	0	0	0	40802000	29516000	11286000	0	0	0	23348000	12684000	10663000	51528	3799	48515	311432;311433;311434	419140;419141;419142	419142			3	
TPNPANQYQFDK	1	Unmodified	1421.6575	0.65754307	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			34.771	34.425	2	0.035131	30689	160511_QHF_FH_JSI10i_1	46.796	35.645			0.89323	1.0065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89323	1.0065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33908000	17826000	16082000	0	0	0	33908000	17826000	16082000	0	0	0	0	0	0	51529	2469	48516	311435	419143	419143			1	
TPPGLQHEYAAPADYFR	0	Unmodified	1931.9166	0.91661131	4477	Q9BVL2	NUPL1	Nucleoporin p58/p45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	1	2	59.546	58.741	3	3.5633E-06	51035	160511_QHF_FH_JSI11i_2	95.814	78.736			1.1169	1.1625	8.2547	6	1	Median	1.3432	1.1437	NaN	1	0	Median	0.98583	1.2073	14.994	2	1	Median	1.1504	1.1816	NaN	1	0	Median	1.1287	1.2015	9.6723	2	0	Median	817980000	409570000	408410000	76484000	39352000	37132000	299630000	162940000	136690000	158640000	82992000	75647000	283230000	124280000	158950000	51530	4477	48517	311436;311437;311438;311439;311440;311441	419144;419145;419146;419147;419148;419149;419150;419151;419152;419153;419154	419150			11	
TPPLGPMPNSDIDLSNLER	0	Unmodified	2065.015	0.015004722	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	85.223	84.774	2;3	9.4508E-05	77130	160511_QHF_FH_JSI12i_1	70.622	47.901			0.94225	0.93462	17.113	6	2	Median	1.0834	0.91392	NaN	1	0	Median	0.78616	0.88231	NaN	1	0	Median	1.1932	1.1504	27.329	2	1	Median	0.90213	0.93462	2.0008	2	1	Median	168770000	86046000	82723000	30502000	14133000	16369000	32793000	19430000	13363000	50775000	22241000	28535000	54699000	30243000	24456000	51531	4033	48518	311442;311443;311444;311445;311446;311447	419155;419156;419157;419158;419159;419160;419161;419162	419156			8	
TPPLITDYR	0	Unmodified	1074.571	0.5709599	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	47.088	46.134	2	0.063427	39778	160511_QHF_FH_JSI11i_2	32.892	16.559			0.74447	0.79864	28.301	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96009	0.97557	NaN	1	0	Median	0.57727	0.65379	NaN	1	0	Median	114950000	67556000	47397000	0	0	0	0	0	0	62843000	30325000	32518000	52110000	37230000	14879000	51532	999	48519	311448;311449	419163	419163			1	
TPPLITDYREYHTDTTVK	1	Unmodified	2149.0691	0.069148783	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	51.411	51.117	3	0.0071733	45171	160511_QHF_FH_JSI11i_3	46.494	31.404			1.325	1.1643	15.834	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.63633	0.77696	NaN	1	0	Median	1.0812	1.006	12.739	2	2	Median	1.0613	1.0607	NaN	1	1	Median	336750000	152160000	184590000	0	0	0	39203000	23191000	16011000	205170000	87341000	117830000	92372000	41626000	50746000	51533	999	48520	311450;311451;311452;311453	419164;419165;419166;419167;419168	419165			5	
TPPQLEALQELHPYMEGAQLR	0	Unmodified	2420.2158	0.2158298	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			90.097	89.598	3	0.044375	79593	160511_QHF_FH_JSI10i_2	23.536	15.639			1.1158	1.3481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1158	1.3481	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20544000	8155500	12388000	0	0	0	20544000	8155500	12388000	0	0	0	0	0	0	51534	405	48521	311454	419169	419169			1	
TPPRDLPTIPGVTSPSSDEPPMEASQSHLR	0	Unmodified	3198.5615	0.56154078	2435	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				70.372	68.886	4	3.5312E-09	56481	160511_QHF_FH_JSI9i_3	59.573	57.378			1.3749	1.1198	NaN	1	0	Median	1.3749	1.1198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43152000	18203000	24949000	43152000	18203000	24949000	0	0	0	0	0	0	0	0	0	51535	2435	48522	311455	419170;419171;419172	419171			3	
TPPSEEDSAEAER	0	Unmodified	1416.6005	0.6004817	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.033	11.63	2	0.00012356	9135	160511_QHF_FH_JSI9i_1	87.298	84.042			0.95131	0.99534	6.237	4	0	Median	1.2377	1.0228	NaN	1	0	Median	0.81524	0.96858	NaN	1	0	Median	0.91856	0.90512	NaN	1	0	Median	0.98523	1.0389	NaN	1	0	Median	774170000	401950000	372220000	153370000	65743000	87629000	175400000	90683000	84721000	225200000	121080000	104120000	220200000	124440000	95755000	51536	372	48523	311456;311457;311458;311459	419173;419174;419175;419176;419177	419177			5	
TPPTANHPVEPVTSVTQPSELLQQK	1	Unmodified	2697.3974	0.39735921	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	65.47	64.17	3	0.00084906	55165	160511_QHF_FH_JSI12i_2	42.454	35.731			0.7217	0.75914	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7217	0.75914	NaN	1	1	Median	16495000	10047000	6448000	0	0	0	0	0	0	0	0	0	16495000	10047000	6448000	51537	701	48524	311460	419178	419178			1	
TPPTAVTEHDVNVAFQQSAHK	1	Unmodified	2276.1186	0.11855859	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48.585	48.425	3;4	1.3649E-06	41399	160511_QHF_FH_JSI12i_3	74.698	65.879			0.86102	0.89908	21.13	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64486	0.58961	NaN	1	0	Median	0.76402	0.80063	16.401	2	0	Median	214430000	138010000	76416000	0	0	0	0	0	0	32026000	19908000	12118000	182400000	118110000	64298000	51538	5281	48525	311461;311462;311463	419179;419180;419181;419182;419183	419182			4	
TPPVAVTSPITHTAQSALK	1	Unmodified	1918.0524	0.052376507	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	58.344	58.257	3	0.0047276	51561	160511_QHF_FH_JSI11i_3	44.641	33.825			1.3397	1.3442	14.632	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2436	1.1639	17.028	2	2	Median	1.3397	1.3442	NaN	1	0	Median	245180000	113360000	131820000	0	0	0	0	0	0	151640000	73564000	78076000	93542000	39798000	53744000	51539	3643	48526	311464;311465;311466	419184;419185;419186;419187	419184			4	
TPPYADPSLQAPVR	0	Unmodified	1510.778	0.77799256	2214	Q04206	RELA	Transcription factor p65	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	52.368	51.75	2	0.0043979	47112	160511_QHF_FH_JSI12i_1	54.776	38.522			1.0961	1.0509	4.8255	5	3	Median	1.2072	0.98635	NaN	1	1	Median	0.85532	0.99361	NaN	1	0	Median	1.1193	1.0832	3.1893	2	2	Median	1.0169	1.0509	NaN	1	0	Median	731630000	343210000	388420000	129820000	58873000	70947000	149740000	72437000	77303000	325260000	153610000	171650000	126810000	58290000	68519000	51540	2214	48527	311467;311468;311469;311470;311471	419188;419189;419190;419191;419192;419193	419191			6	
TPQAFVHPSEQDGER	0	Unmodified	1696.7805	0.78051176	4460	Q9BV44	THUMPD3	THUMP domain-containing protein 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		22.798	22.798	3	0.00024996	19282	160511_QHF_FH_JSI11i_3	65.107	51.97			0.46884	0.45396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46884	0.45396	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64152000	43895000	20257000	0	0	0	0	0	0	64152000	43895000	20257000	0	0	0	51541	4460	48528	311472	419194	419194			1	
TPQAPASANLVGPR	0	Unmodified	1377.7365	0.7364621	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.627	36.019	2	0.041713	32506	160511_QHF_FH_JSI11i_1	38.634	24.427			1.0213	1.0503	7.9634	4	0	Median	1.2936	1.0728	NaN	1	0	Median	0.88019	1.0283	NaN	1	0	Median	1.1537	1.1151	NaN	1	0	Median	0.90412	0.92702	NaN	1	0	Median	377420000	191080000	186340000	79761000	35585000	44176000	91304000	49488000	41815000	109030000	53174000	55857000	97322000	52829000	44492000	51542	5474	48529	311473;311474;311475;311476	419195;419196	419195			2	
TPQEDYVEAAVK	1	Unmodified	1348.6511	0.65106071	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			39.764	39.372	2	0.024686	35243	160511_QHF_FH_JSI10i_1	41.164	19.418			0.93143	1.0928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93143	1.0928	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47194000	28681000	18512000	0	0	0	47194000	28681000	18512000	0	0	0	0	0	0	51543	3861	48530	311477	419197	419197			1	
TPQGPPEIYSDTQFPSLQSTAK	1	Unmodified	2391.1594	0.15942035	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	74.627	74.135	2;3	7.9331E-13	67452	160511_QHF_FH_JSI11i_1	149.09	137.47			1.1212	1.0547	22.104	8	0	Median	0.97998	0.8095	17.008	2	0	Median	1.1834	1.384	1.1145	2	0	Median	1.1782	1.1166	2.578	2	0	Median	0.92205	0.96952	6.4132	2	0	Median	1483200000	686450000	796750000	424180000	196550000	227640000	360410000	166470000	193940000	358430000	160010000	198420000	340190000	163420000	176760000	51544	5383	48531	311478;311479;311480;311481;311482;311483;311484;311485	419198;419199;419200;419201;419202;419203;419204;419205;419206;419207;419208;419209;419210;419211;419212;419213;419214;419215;419216;419217;419218	419204			21	
TPQQLWYTHEK	1	Unmodified	1429.699	0.69901396	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	31.346	30.8	2;3	2.2435E-05	26294	160511_QHF_FH_JSI11i_3	88.021	82.867			1.1007	1.0856	9.5946	7	1	Median	1.3029	1.0856	NaN	1	0	Median	0.87007	1.059	NaN	1	0	Median	1.0262	1.0157	4.1707	2	0	Median	1.114	1.1346	7.7864	3	1	Plateau	668120000	309750000	358360000	63499000	27893000	35606000	84857000	36898000	47959000	223240000	120930000	102310000	296520000	124030000	172480000	51545	1117	48532	311486;311487;311488;311489;311490;311491;311492	419219;419220;419221;419222;419223;419224;419225;419226	419221			6	
TPQQLWYTHEKK	2	Acetyl (K)	1599.8045	0.80454166	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.299	36.625	3	0.0046743	19943	160513_QHF_FH_JSI11Kac_6	56.482	45.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5196100	5196100	0	0	0	0	0	0	0	5196100	5196100	0	0	0	0	51546	1117	48533	311493	419227	419227	969		1	
TPQQTSASQQMLNFPDK	1	Unmodified	1919.9047	0.90472599	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	52.599	51.93	2;3	6.4595E-06	46967	160511_QHF_FH_JSI11i_1	91.475	75.532			0.95603	1.0933	9.6982	4	1	Linear	1.3199	1.0626	NaN	1	1	Median	0.84465	1.0029	NaN	1	0	Median	1.1829	1.125	NaN	1	0	Median	1.2162	1.2589	NaN	1	0	Median	261180000	130270000	130900000	60604000	26842000	33762000	74471000	40846000	33625000	72359000	38959000	33400000	53741000	23624000	30117000	51547	3685	48534	311494;311495;311496;311497;311498	419228;419229;419230;419231;419232;419233;419234;419235	419229			8	
TPQSQQSAYFLLTLFR	0	Unmodified	1898.989	0.98904797	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	1	2	1	95.642	87.048	2;3	8.5831E-06	49039	160513_QHF_FH_JSI11Kac_6	101.05	83.138			1.0245	1.0047	23.957	5	1	Median	1.1952	1.0047	NaN	1	0	Median	0.90909	1.0845	NaN	1	0	Median	1.0416	1.0079	1.362	2	1	Median	0.56554	0.60338	NaN	1	0	Median	514260000	271130000	243140000	59251000	27482000	31769000	138690000	68865000	69826000	218390000	117290000	101100000	97928000	57487000	40441000	51548	3009	48535	311499;311500;311501;311502;311503	419236;419237;419238;419239	419236			4	
TPQSVTAK	1	Unmodified	830.44978	0.44978213	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.0361	5.7982	2	0.036037	3805	160511_QHF_FH_JSI10i_1	40.352	11.929			0.7958	0.95168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7958	0.95168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	223480000	125050000	98423000	0	0	0	223480000	125050000	98423000	0	0	0	0	0	0	51549	3323	48536	311504	419240	419240			1	
TPSAETPSEPVDWTFAQR	0	Unmodified	2017.9381	0.93813461	411	O60333	KIF1B	Kinesin-like protein KIF1B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				68.152	67.158	2	9.7405E-05	59710	160511_QHF_FH_JSI9i_1	74.326	52.453			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51550	411	48537	311505	419241	419241			1	
TPSALAILENANVLAR	0	Unmodified	1651.9257	0.92571943	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	3	1	1	100.99	100.9	3	3.5341E-23	87538	160511_QHF_FH_JSI12i_3	139.86	119.48			0.96372	1.0637	35.659	6	0	Median	1.8432	1.5405	33.834	2	0	Median	0.93026	1.1202	25.862	2	0	Median	0.85645	0.79672	NaN	1	0	Median	0.76757	0.77453	NaN	1	0	Median	384290000	190020000	194270000	83928000	37689000	46238000	142420000	72156000	70266000	77744000	36915000	40829000	80196000	43256000	36940000	51551	944	48538	311506;311507;311508;311509;311510;311511;311512	419242;419243;419244;419245;419246;419247;419248;419249;419250	419250			7	
TPSFGISAPQVSIPDVNVNLK	1	Unmodified	2182.1634	0.16338352	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	99.931	99.834	2;3	2.1171E-05	90610	160511_QHF_FH_JSI11i_1	57.045	52.693			0.82077	0.93538	20.769	5	0	Median	0.7727	0.62007	NaN	1	0	Median	0.79706	0.91556	3.0291	2	0	Median	1.0462	1.0015	NaN	1	0	Median	0.97294	1.0445	NaN	1	0	Median	131610000	70094000	61519000	13092000	8176800	4915100	52234000	29504000	22729000	22469000	11391000	11078000	43819000	21022000	22797000	51552	2286	48539	311513;311514;311515;311516;311517	419251;419252;419253;419254	419251			4	
TPSIQPSLLPHAAPFAK	1	Unmodified	1773.9778	0.977755	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	4	1	71.406	70.775	3	2.8933E-05	63148	160511_QHF_FH_JSI11i_3	88.385	76.184			0.83569	0.84631	18.938	5	2	Median	NaN	NaN	NaN	0	0	Median	0.5798	0.70546	25.743	2	1	Median	0.91758	0.89229	8.6763	2	1	Median	0.88578	0.90754	NaN	1	0	Median	623690000	329850000	293840000	0	0	0	130370000	82292000	48076000	227600000	106870000	120730000	265730000	140700000	125030000	51553	1443	48540	311518;311519;311520;311521;311522;311523;311524	419255;419256;419257;419258;419259;419260;419261;419262;419263;419264	419256			10	
TPSLTVFLLGQSAR	0	Unmodified	1488.83	0.83002813	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			86.163	79.003	2	2.9515E-05	43056	160513_QHF_FH_JSI9Kac_6	102.66	88.242			0.73734	0.73803	15.054	2	0	Median	0.78868	0.66351	NaN	1	0	Median	0.68934	0.82093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156810000	87385000	69426000	58523000	30836000	27687000	98288000	56549000	41739000	0	0	0	0	0	0	51554	1251	48541	311525;311526	419265;419266;419267;419268	419265			4	
TPSNELYK	1	Unmodified	950.47091	0.4709115	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	15.622	14.891	2	0.031143	12529	160511_QHF_FH_JSI12i_1	41.429	24.064			1.1125	1.0333	26.993	2	0	Median	1.0282	0.85372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2037	1.2506	NaN	1	0	Median	245900000	109120000	136790000	94898000	39272000	55626000	0	0	0	0	0	0	151010000	69845000	81162000	51555	3766	48542	311527;311528	419269	419269			1	
TPSPKEEDEEPESPPEK	2	Unmodified	1923.8585	0.85854688	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	18.701	18.254	3	2.7395E-12	15616	160511_QHF_FH_JSI10i_1	176.21	149.85			1.1372	1.118	4.8704	5	2	Median	1.3237	1.0927	NaN	1	0	Median	0.96093	1.1121	7.4611	2	2	Median	1.1499	1.118	NaN	1	0	Median	1.1372	1.1858	NaN	1	0	Median	782380000	392810000	389580000	155150000	68036000	87117000	317690000	176170000	141520000	143600000	68365000	75237000	165940000	80235000	85704000	51556	4657	48543	311529;311530;311531;311532;311533	419270;419271;419272;419273;419274;419275;419276;419277;419278;419279;419280;419281	419278			12	
TPSSDVLVFDYTK	1	Unmodified	1470.7242	0.72422566	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	6.37	3						2				2	1	2	71.604	67.117	2;3	1.0728E-24	35296	160513_QHF_FH_JSI12Kac_4	161.94	151.11			0.96621	0.99607	7.7886	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84797	1.0006	10.676	2	0	Median	0.9875	0.95745	NaN	1	0	Median	0.98955	1.0536	7.9372	2	0	Median	351780000	186230000	165550000	0	0	0	140980000	68856000	72123000	98439000	56589000	41850000	112360000	60780000	51578000	51557	2283;2741	48544	311534;311535;311536;311537;311538	419282;419283;419284;419285;419286	419286			5	
TPSSECYHGQSLGKPLVLQAALHGQSSIGNGK	2	Acetyl (K)	3362.6677	0.66773719	3857	Q92613	JADE3	Protein Jade-3	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	78.24	68.86	4	2.525E-10	36297	160513_QHF_FH_JSI12Kac_6	87.25	82.294			0.96055	0.99297	37.084	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76493	0.76393	NaN	1	0	Median	1.2062	1.2907	NaN	1	0	Median	79506000	36219000	43287000	0	0	0	0	0	0	37215000	19854000	17361000	42292000	16365000	25927000	51558	3857	48545	311539;311540	419287;419288	419288	2968		2	
TPSSSQPERLPIGNTIQPSQAATFMNDAIEK	1	Unmodified	3327.6405	0.64051939	327	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			88.365	87.877	3	0.00018359	77294	160511_QHF_FH_JSI9i_2	41.83	36.623			0.89952	0.93066	11.666	2	0	Median	1.1541	1.0107	NaN	1	0	Median	0.7011	0.85697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64522000	34623000	29899000	32240000	15860000	16380000	32282000	18763000	13519000	0	0	0	0	0	0	51559	327	48546	311541;311542	419289;419290;419291;419292	419289			4	
TPSTMENDSSNLDPSQAPSLAQPLVFSNSK	1	Unmodified	3161.4823	0.48228741	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	83.511	83.001	3;4	1.274E-16	75290	160511_QHF_FH_JSI10i_1	87.772	85.14			1.0378	1.0134	17.587	8	4	Median	1.3377	1.0918	11.004	2	1	Median	0.79965	0.95971	NaN	1	0	Median	1.0637	1.03	10.199	2	1	Median	0.97651	1.0167	27.279	3	2	Median	546360000	281680000	264690000	109260000	53531000	55728000	125420000	75936000	49485000	153430000	81222000	72208000	158250000	70989000	87264000	51560	2505	48547	311543;311544;311545;311546;311547;311548;311549;311550	419293;419294;419295;419296;419297;419298;419299;419300;419301;419302;419303;419304;419305;419306;419307;419308;419309;419310;419311;419312	419308			20	
TPTEALASFDYIVR	0	Unmodified	1581.8039	0.80387296	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1.4	0.49	3	2									2	2	1	83.579	83.125	3	0.018401	73113	160511_QHF_FH_JSI11i_2	50.843	45.86			0.82482	0.97445	21.674	5	0	Median	NaN	NaN	NaN	0	0	Median	0.86643	1.0283	7.6005	2	0	Median	0.96742	0.97569	29.043	2	0	Median	0.69304	0.70962	NaN	1	0	Median	75474000	37133000	38341000	0	0	0	30798000	14617000	16181000	35700000	17602000	18098000	8975400	4914200	4061200	51561	4773	48548	311551;311552;311553;311554;311555	419313	419313			0	
TPTHEMFVGFTPSPVAQPHPSAGLNVDFESVFGNK	1	Unmodified	3740.7933	0.79333163	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.79	100.79	4	4.1997E-12	89799	160511_QHF_FH_JSI11i_3	76.478	65.967			0.64083	0.61539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64083	0.61539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54948000	40235000	14713000	0	0	0	0	0	0	54948000	40235000	14713000	0	0	0	51562	2425	48549	311556	419314	419314			1	
TPTLYLDFK	1	Unmodified	1096.5805	0.58046195	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	70.216	69.306	2	0.0018059	59678	160511_QHF_FH_JSI12i_2	76.345	55.646			0.89189	0.93388	14.184	6	4	Median	0.89266	0.75827	NaN	1	0	Median	0.63515	0.77761	NaN	1	0	Median	0.92446	0.93388	9.2368	2	2	Median	0.91314	1.0322	3.4558	2	2	Median	703280000	357580000	345700000	66870000	29963000	36907000	83326000	49116000	34209000	246710000	121450000	125260000	306370000	157050000	149320000	51563	157	48550	311557;311558;311559;311560;311561;311562	419315;419316;419317;419318;419319;419320;419321;419322;419323	419315			9	
TPTMGWLHWER	0	Unmodified	1412.6659	0.66593969	847	P06280	GLA	Alpha-galactosidase A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			72.778	65.313	3	0.005069	35955	160513_QHF_FH_JSI10Kac_6	44.299	36.755			0.84905	1.0076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84905	1.0076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62992000	28188000	34804000	0	0	0	62992000	28188000	34804000	0	0	0	0	0	0	51564	847	48551	311563	419324	419324			1	
TPTPEPAEVETRK	1	Unmodified	1453.7413	0.7412727	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	1				By MS/MS	2.5	0.5		1	1										2	20.909	20.328	3	0.023286	16700	160511_QHF_FH_JSI12i_2	28.976	16.811			0.76735	0.8151	30.309	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76735	0.8151	30.309	2	1	Median	72138000	43433000	28704000	0	0	0	0	0	0	0	0	0	72138000	43433000	28704000	51565	5316	48552	311564;311565	419325;419326;419327	419325			3	
TPTPSTPGDTQPNTPAPVPPAEDGIK	1	Unmodified	2584.2657	0.26567634	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				54.942	53.765	3	0.017007	47770	160511_QHF_FH_JSI9i_1	28.93	21.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13753000	0	13753000	13753000	0	13753000	0	0	0	0	0	0	0	0	0	51566	2578	48553	311566	419328	419328			1	
TPTQLEGATR	0	Unmodified	1072.5513	0.55128709	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	15.391	14.861	2	0.00093589	12572	160511_QHF_FH_JSI12i_1	81.338	49.403			0.8567	0.81862	15.044	3	3	Plateau	0.8567	0.71696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74183	0.71919	NaN	1	1	Median	0.86648	0.93181	NaN	1	1	Median	1096800000	670310000	426470000	344060000	222340000	121720000	0	0	0	367620000	224760000	142870000	385090000	223210000	161880000	51567	606	48554	311567;311568;311569	419329;419330;419331	419330			3	
TPTSSPASSPLVAK	1	Unmodified	1341.714	0.71399532	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.281	29.682	2	0.00029137	26955	160511_QHF_FH_JSI12i_1	82.171	71.461			0.93433	0.9315	2.4024	4	0	Median	1.1417	0.93737	NaN	1	0	Median	0.78693	0.92568	NaN	1	0	Median	0.92708	0.91514	NaN	1	0	Median	0.94164	0.96754	NaN	1	0	Median	421470000	208070000	213390000	107730000	43417000	64309000	108260000	55372000	52893000	93852000	49158000	44693000	111620000	60127000	51497000	51568	2561	48555	311570;311571;311572;311573	419332;419333;419334;419335;419336	419334			5	
TPTTNAVHK	1	Unmodified	967.50869	0.50869399	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.7874	5.7874	3	0.0032591	3549	160511_QHF_FH_JSI11i_3	55.084	40.877			0.96052	0.88301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96052	0.88301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	150430000	84112000	66319000	0	0	0	0	0	0	150430000	84112000	66319000	0	0	0	51569	2985	48556	311574	419337	419337			1	
TPVANQSSNLTATQMSFPVQGVHTVAQTVSR	0	Unmodified	3255.6306	0.6306234	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			78.248	77.297	3	7.1731E-17	68847	160511_QHF_FH_JSI10i_2	88.668	86.261			0.91999	1.0865	11.654	3	1	Median	1.2529	1.1018	NaN	1	1	Median	0.85024	0.9858	13.754	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44519000	20670000	23849000	12983000	3333200	9650300	31535000	17337000	14198000	0	0	0	0	0	0	51570	3021	48557	311575;311576;311577	419338;419339;419340;419341;419342;419343	419343			6	
TPVEEVPAAIAPFQGR	0	Unmodified	1680.8835	0.88352026	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									1		2	2	72.196	71.64	2;3	7.4214E-06	65178	160511_QHF_FH_JSI11i_1	88.706	81.132			0.89175	0.83785	15.301	5	5	Median	0.99229	0.82457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.90596	0.88302	2.0911	2	2	Median	0.68198	0.7168	22.068	2	2	Median	932620000	531570000	401050000	150730000	76804000	73927000	0	0	0	340410000	182800000	157600000	441480000	271960000	169520000	51571	2665	48558	311578;311579;311580;311581;311582	419344;419345;419346;419347;419348;419349;419350	419346			7	
TPVEPEVAIHR	0	Unmodified	1246.667	0.66698555	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.35	5	8	9				3	4		5	9	8	7	35.119	32.028	2;3	2.8947E-30	28673	160511_QHF_FH_JSI11i_1	183.03	164.97			0.87065	0.93772	17.179	27	2	Median	1.1977	0.9923	14.456	4	0	Median	0.79383	0.9469	15.009	8	1	Median	0.90858	0.9083	17.715	8	1	Median	0.85174	0.93754	21.106	7	0	Median	19953000000	10084000000	9869100000	3099100000	1511900000	1587200000	4820000000	2695500000	2124500000	6457800000	3084400000	3373500000	5576400000	2792500000	2783900000	51572	1918	48559	311583;311584;311585;311586;311587;311588;311589;311590;311591;311592;311593;311594;311595;311596;311597;311598;311599;311600;311601;311602;311603;311604;311605;311606;311607;311608;311609;311610;311611	419351;419352;419353;419354;419355;419356;419357;419358;419359;419360;419361;419362;419363;419364;419365;419366;419367;419368;419369;419370;419371;419372;419373;419374;419375;419376;419377;419378;419379;419380;419381;419382;419383;419384;419385;419386;419387;419388;419389;419390;419391;419392;419393;419394;419395;419396;419397;419398;419399;419400;419401	419355			50	
TPVEVPVGGFK	1	Unmodified	1128.6179	0.61791009	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.497	56.007	2	0.0030712	50675	160511_QHF_FH_JSI11i_1	56.258	48.69			0.62056	0.62007	8.3256	3	0	Median	NaN	NaN	NaN	0	0	Median	0.46716	0.55605	NaN	1	0	Median	0.6321	0.62007	NaN	1	0	Median	0.62056	0.65484	NaN	1	0	Median	514730000	307360000	207380000	0	0	0	181360000	112710000	68650000	190060000	107780000	82275000	143310000	86859000	56452000	51573	2636	48560	311612;311613;311614	419402;419403;419404	419402			3	
TPVGFIGLGNMGNPMAK	1	Unmodified	1702.8535	0.85348246	1380	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							5	4	3	3	87.226	86.572	2;3	1.2276E-15	75276	160511_QHF_FH_JSI12i_3	203.11	183.45			0.99322	1.0157	25.647	14	1	Median	1.2779	1.0455	15.717	4	1	Median	0.81853	0.98763	13.439	4	0	Median	1.0756	1.0013	44.459	3	0	Plateau	0.97642	0.96803	30.928	3	0	Median	748830000	351850000	396980000	129550000	56514000	73035000	132350000	69042000	63305000	171940000	91024000	80917000	315000000	135270000	179720000	51574	1380	48561	311615;311616;311617;311618;311619;311620;311621;311622;311623;311624;311625;311626;311627;311628;311629	419405;419406;419407;419408;419409;419410;419411;419412;419413;419414;419415;419416;419417;419418;419419;419420;419421;419422;419423;419424;419425;419426;419427	419427			21	
TPVIVTLK	1	Unmodified	869.5586	0.5586043	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							2	1	2	2	48.162	47.513	2	0.043192	42750	160511_QHF_FH_JSI11i_1	38.776	20.79			1.0066	0.97535	14.79	7	0	Median	1.0415	0.87959	12.254	2	0	Median	0.8951	1.0586	NaN	1	0	Median	1.0572	1.0523	10.733	2	0	Median	1.0719	1.1015	21.445	2	0	Median	776400000	372430000	403970000	198760000	84443000	114320000	94039000	51632000	42407000	357680000	172930000	184750000	125920000	63432000	62489000	51575	5633	48562	311630;311631;311632;311633;311634;311635;311636	419428;419429;419430	419428			3	
TPVKFWFLK	2	Acetyl (K)	1206.6801	0.68011642	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		89.715	80.371	2	0.044053	45013	160513_QHF_FH_JSI11Kac_6	52.579	34.714			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8431900	8431900	0	0	0	0	0	0	0	8431900	8431900	0	0	0	0	51576	5135	48563	311637	419431	419431			1	
TPVLFDIYEIK	1	Unmodified	1336.7279	0.72785447	1723	P50995	ANXA11	Annexin A11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	95.194	94.839	2	1.6627E-05	83920	160511_QHF_FH_JSI10i_2	117.67	117.67			0.97618	1.0298	25.043	8	1	Median	1.4938	1.2408	21.848	2	1	Median	0.6667	0.79644	33.73	2	0	Median	0.95958	0.94759	14.374	2	0	Median	1.009	1.0552	22.049	2	0	Median	1177900000	579920000	598010000	222120000	86323000	135800000	306350000	182130000	124220000	388020000	182770000	205240000	261450000	128700000	132750000	51577	1723	48564	311638;311639;311640;311641;311642;311643;311644;311645	419432;419433;419434;419435;419436;419437;419438;419439;419440;419441;419442;419443;419444;419445;419446	419445			15	
TPVPSDIDISR	0	Unmodified	1198.6194	0.61936665	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.57	4	1				1	1			1	2	1	3	49.2	45.853	2	2.4116E-07	41510	160511_QHF_FH_JSI11i_1	121.6	82.641			1.0724	1.1038	17.378	7	1	Median	1.2669	1.0434	NaN	1	0	Median	1.1389	1.3762	31.193	2	1	Median	1.0733	1.057	NaN	1	0	Median	1.0719	1.1419	2.1433	3	0	Plateau	6012200000	2992500000	3019700000	1516800000	729370000	787470000	1746000000	896020000	850010000	1464000000	741560000	722460000	1285300000	625550000	659750000	51578	1004	48565	311646;311647;311648;311649;311650;311651;311652	419447;419448;419449;419450;419451;419452;419453	419448			7	
TPVQPNPIVYMMK	1	Unmodified	1516.7782	0.77819226	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	3	1	78.876	78.226	2	0.00070875	70678	160511_QHF_FH_JSI10i_1	82.749	68.059			0.88641	0.79024	28.998	6	5	Median	0.92078	0.77627	7.5777	2	2	Median	0.56495	0.66046	NaN	1	1	Median	0.84602	0.82387	10.948	2	2	Median	1.3927	1.4985	NaN	1	0	Median	271220000	149480000	121740000	72270000	39245000	33026000	57522000	36768000	20754000	98774000	54339000	44435000	42654000	19123000	23530000	51579	750	48566	311653;311654;311655;311656;311657;311658;311659	419454;419455;419456;419457;419458;419459;419460;419461	419457			8	
TPVSITEHPK	1	Unmodified	1107.5924	0.59242362	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		17.528	16.88	2;3	0.0015979	14254	160511_QHF_FH_JSI10i_2	61.344	42.813			1.0277	1.1672	16.942	4	3	Median	1.0604	0.91768	NaN	1	1	Median	0.9627	1.1672	5.8722	2	1	Median	1.3561	1.3729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	632040000	284030000	348010000	28521000	10921000	17600000	274560000	155780000	118780000	328960000	117330000	211630000	0	0	0	51580	2517	48567	311660;311661;311662;311663	419462;419463;419464;419465	419465			4	
TPVTDPATGAVK	1	Unmodified	1155.6136	0.61355299	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.71	25.144	2	0.001157	22012	160511_QHF_FH_JSI10i_1	64.906	52.67			1.0023	1.0157	4.3798	4	0	Median	1.1723	0.96156	NaN	1	0	Median	0.88951	1.0684	NaN	1	0	Median	1.0372	1.0056	NaN	1	0	Median	0.96864	1.026	NaN	1	0	Median	2550500000	1268100000	1282400000	708460000	295360000	413090000	599110000	319450000	279660000	479870000	265740000	214130000	763040000	387500000	375530000	51581	1675	48568	311664;311665;311666;311667	419466;419467;419468	419467			3	
TPVTEQEEK	1	Unmodified	1059.5084	0.50841922	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.4376	8.0882	2	0.0007658	5602	160511_QHF_FH_JSI9i_1	74.533	46.709			1.0194	1.0038	11.562	4	0	Median	1.3513	1.1153	NaN	1	0	Median	0.70701	0.85078	NaN	1	0	Median	1.0167	0.96853	NaN	1	0	Median	1.022	1.0403	NaN	1	0	Median	482730000	243280000	239440000	120860000	51716000	69144000	126070000	69734000	56338000	107000000	51211000	55788000	128800000	70622000	58173000	51582	4988	48569	311668;311669;311670;311671	419469;419470;419471;419472;419473;419474;419475;419476	419475			8	
TPVTQVNEVTGTLR	0	Unmodified	1513.81	0.81002097	2399	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.334	49.938	2	0.0019838	42659	160511_QHF_FH_JSI12i_2	58.676	48.989			0.95894	1.0377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95894	1.0377	NaN	1	0	Median	43132000	21558000	21574000	0	0	0	0	0	0	0	0	0	43132000	21558000	21574000	51583	2399	48570	311672	419477;419478	419477			2	
TPVVQNAASIVQPSPAHVGQQGLSK	1	Unmodified	2512.3398	0.33978476	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.167	57.504	3	1.8884E-25	51046	160511_QHF_FH_JSI11i_3	154.33	143.18			1.0213	1.0205	5.5267	6	0	Median	1.2832	1.0897	NaN	1	0	Median	0.84766	1.0377	NaN	1	0	Median	1.0892	1.0609	8.3681	2	0	Median	0.94053	0.98962	1.9892	2	0	Median	550650000	287410000	263240000	91590000	47200000	44390000	83339000	47852000	35487000	222140000	115190000	106950000	153580000	77172000	76413000	51584	3813	48571	311673;311674;311675;311676;311677;311678	419479;419480;419481;419482;419483;419484;419485;419486;419487;419488;419489;419490;419491;419492;419493;419494;419495;419496;419497;419498;419499;419500;419501;419502	419481			24	
TPVVTGTGPNFSLGELQGHLAYDLNPASTGLR	0	Unmodified	3281.6681	0.66805477	912	P08651	NFIC	Nuclear factor 1 C-type	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.84	100.76	3	9.7222E-68	88554	160511_QHF_FH_JSI9i_2	201.08	193.21			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60428000	23578000	36850000	60428000	23578000	36850000	0	0	0	0	0	0	0	0	0	51585	912	48572	311679	419503	419503			1	
TPYGASIFQSK	1	Unmodified	1197.603	0.60298831	2220	Q04726;Q04724;Q04727;Q04725	TLE3;TLE1;TLE4;TLE2	Transducin-like enhancer protein 3;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4;Transducin-like enhancer protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	48.368	47.637	2	0.001336	40737	160511_QHF_FH_JSI12i_3	64.374	53.544			0.68002	0.75923	30.204	5	0	Median	0.6764	0.57789	NaN	1	0	Median	0.59583	0.7285	NaN	1	0	Median	1.0018	0.93224	NaN	1	0	Median	0.91976	0.99024	37.567	2	0	Median	499710000	290040000	209670000	87943000	61376000	26567000	76565000	53281000	23284000	97891000	45241000	52650000	237310000	130140000	107170000	51586	2220	48573	311680;311681;311682;311683;311684	419504;419505;419506;419507	419507			4	
TPYHVNLLLAGYDEHEGPALYYMDYLAALAK	1	Unmodified	3510.717	0.71697879	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	96.63	88.369	3;4	3.2326E-72	49895	160513_QHF_FH_JSI9Kac_6	242.11	219.91			0.958	0.99854	16.818	7	3	Median	0.97466	0.83607	25.114	2	1	Median	0.74068	0.87553	5.1216	2	1	Median	1.1639	1.1019	11.076	2	1	Median	0.958	0.99881	NaN	1	0	Median	5351800000	2812400000	2539400000	716180000	336760000	379420000	2144700000	1262100000	882570000	854130000	414990000	439150000	1636800000	798550000	838220000	51587	1673	48574	311685;311686;311687;311688;311689;311690;311691	419508;419509;419510;419511;419512;419513;419514;419515;419516;419517	419513			10	
TPYIVLSGSGK	1	Unmodified	1120.6128	0.61282471	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				46.519	45.464	2	0.028061	39783	160511_QHF_FH_JSI9i_2	47.844	39.801			0.83865	0.72259	NaN	1	1	Median	0.83865	0.72259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41485000	23098000	18386000	41485000	23098000	18386000	0	0	0	0	0	0	0	0	0	51588	318	48575	311692	419518	419518			1	
TPYTDVNIVTIR	0	Unmodified	1390.7456	0.7456298	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.543	62.634	2	0.0016051	55505	160511_QHF_FH_JSI10i_2	79.286	65.593			0.86155	0.93353	5.0722	4	0	Median	1.1644	1.0273	NaN	1	0	Median	0.73998	0.92192	NaN	1	0	Median	0.91628	0.94127	NaN	1	0	Median	0.81008	0.92586	NaN	1	0	Median	501140000	254790000	246340000	102440000	45789000	56648000	108850000	57766000	51081000	157820000	78820000	78996000	132040000	72419000	59617000	51589	1698	48576	311693;311694;311695;311696	419519;419520;419521;419522;419523	419523			5	
TPYTIMFGPDK	1	Unmodified	1268.6111	0.61111015	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.43	4	4	4				3	4	2	5	6	5	5	68.097	63.335	2	6.1532E-10	33774	160513_QHF_FH_JSI11Kac_5	131.28	117.71			1.022	1.0503	13.948	21	1	Median	1.0804	0.86786	6.4182	5	0	Median	0.84394	1.0083	7.5412	6	0	Median	1.0766	1.1048	12.977	5	0	Median	1.0373	1.1087	7.9807	5	1	Median	16464000000	8074400000	8389400000	3202700000	1439200000	1763600000	4429500000	2593300000	1836300000	4973500000	2230700000	2742800000	3858100000	1811300000	2046800000	51590	1299	48577	311697;311698;311699;311700;311701;311702;311703;311704;311705;311706;311707;311708;311709;311710;311711;311712;311713;311714;311715;311716;311717	419524;419525;419526;419527;419528;419529;419530;419531;419532;419533;419534;419535;419536;419537;419538;419539;419540;419541;419542;419543;419544;419545;419546;419547;419548;419549;419550;419551;419552;419553;419554;419555;419556;419557;419558;419559;419560;419561;419562;419563;419564;419565;419566;419567;419568;419569	419557			46	
TPYTIMFGPDK	1	Oxidation (M)	1284.606	0.60602477	1299	P27824	CANX	Calnexin	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			2	2	1	65.543	54.726	2	0.00062669	29776	160513_QHF_FH_JSI10Kac_4	83.862	73.49			1.0911	1.1841	6.447	5	0	Median	NaN	NaN	NaN	0	0	Median	0.95212	1.1381	10.455	2	0	Median	1.1999	1.1762	6.4682	2	0	Median	1.0911	1.1841	NaN	1	0	Median	122850000	61198000	61649000	0	0	0	41891000	22590000	19301000	52572000	24917000	27655000	28384000	13692000	14692000	51591	1299	48577	311718;311719;311720;311721;311722	419570;419571;419572;419573;419574;419575	419570		946	6	
TPYTMSYGDSLYYNNAYGALDAYYK	1	Unmodified	2903.2636	0.26362743	4498	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			93.712	93.702	3	1.3335E-08	84928	160511_QHF_FH_JSI10i_1	80.683	78.07			0.9288	1.0438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9288	1.0438	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20475000	13208000	7266100	0	0	0	20475000	13208000	7266100	0	0	0	0	0	0	51592	4498	48578	311723	419576	419576			1	
TQAAAVQK	1	Unmodified	815.45012	0.45011648	3515	Q8N392	ARHGAP18	Rho GTPase-activating protein 18	no	no	0	0	0	0				By MS/MS	1	0	1												1	6.0729	5.7269	2	0.023021	3748	160511_QHF_FH_JSI12i_1	44.753	15.415			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51593	3515	48579	311724	419577	419577			1	
TQADLDSLVR	0	Unmodified	1116.5775	0.57750184	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	48.588	47.645	2	0.00033999	43175	160511_QHF_FH_JSI12i_1	87.298	44.052			0.95813	0.87498	0.38267	2	0	Median	1.0708	0.87261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85728	0.87735	NaN	1	0	Median	250060000	129060000	121010000	133050000	64873000	68173000	0	0	0	0	0	0	117020000	64184000	52834000	51594	3278	48580	311725;311726	419578;419579	419578			2	
TQAEKGDTENGK	2	Acetyl (K)	1318.6001	0.60008777	4799	Q9H981	ACTR8	Actin-related protein 8	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12	0					3						1	1	1	8.3933	1.149	2	0.00012074	2776	160513_QHF_FH_JSI10Kac_2	90.653	71.873			0.83672	0.86615	6.5514	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80332	0.96009	NaN	1	0	Median	0.91844	0.85012	NaN	1	0	Median	0.83672	0.86615	NaN	1	0	Median	14777000	8365000	6411900	0	0	0	5302800	3622400	1680400	4061400	2095600	1965700	5412800	2647100	2765800	51595	4799	48581	311727;311728;311729	419580;419581;419582;419583;419584;419585	419583	3238		6	
TQALMLHIDSFIENLFALAGDEEPEVRK	1	Unmodified	3185.6067	0.60670006	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			99.59	93.869	4	3.4058E-34	55164	160513_QHF_FH_JSI10Kac_6	140.74	118.21			0.66321	0.79754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66321	0.79754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	265350000	158190000	107160000	0	0	0	265350000	158190000	107160000	0	0	0	0	0	0	51596	3914	48582	311730	419586	419586			1	
TQANDYFK	1	Unmodified	985.45051	0.45051041	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.09	23.543	2	0.00057998	20175	160511_QHF_FH_JSI9i_1	103.56	84.832			0.96509	1.024	15.556	4	0	Median	1.4313	1.1548	NaN	1	0	Median	0.9568	1.1176	NaN	1	0	Median	0.97346	0.93825	NaN	1	0	Median	0.7731	0.82833	NaN	1	0	Median	968850000	491660000	477200000	264550000	117660000	146890000	211610000	124180000	87423000	214910000	103520000	111390000	277790000	146300000	131490000	51597	1793	48583	311731;311732;311733;311734	419587;419588;419589;419590;419591;419592;419593;419594	419593			8	
TQANDYFKAK	2	Acetyl (K)	1226.5932	0.5931519	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		41.728	31.685	2	0.040267	19163	160513_QHF_FH_JSI11Kac_4	45.137	32.51			0.49596	0.48996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49596	0.48996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2402100	1501300	900730	0	0	0	0	0	0	2402100	1501300	900730	0	0	0	51598	1793	48584	311735	419595	419595			1	
TQAPAVATT	0	Unmodified	858.4447	0.44469675	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.131	20.613	2	0.00030513	17795	160511_QHF_FH_JSI11i_1	83.206	79.188			0.89998	0.93435	10.584	4	1	Median	0.92191	0.75737	NaN	1	0	Median	0.78943	0.93416	NaN	1	1	Median	0.96468	0.93895	NaN	1	0	Median	0.87856	0.93455	NaN	1	0	Median	3432400000	1803000000	1629400000	814220000	418720000	395500000	837920000	492390000	345530000	846670000	426890000	419770000	933610000	465030000	468580000	51599	1084	48585	311736;311737;311738;311739	419596;419597;419598;419599;419600;419601;419602	419597			7	
TQARPVGVK	1	Unmodified	954.56106	0.56106391	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	1	By MS/MS	By matching	By matching		2	0		3								1	1	1		7.7692	7.4058	3	0.014385	5215	160511_QHF_FH_JSI9i_2	39.305	24.631			0.84554	0.87081	10.243	3	0	Median	1.1553	0.98637	NaN	1	0	Median	0.65592	0.80504	NaN	1	0	Median	0.84554	0.87081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	554210000	258360000	295850000	254840000	107970000	146870000	223100000	114790000	108310000	76264000	35600000	40664000	0	0	0	51600	694	48586	311740;311741;311742	419603	419603			1	
TQASSSFQDSSQPAGK	1	Unmodified	1624.7329	0.73289286	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	1	3	1	18.712	15.96	2	1.1483E-183	13291	160511_QHF_FH_JSI9i_1	320.57	308			0.99492	0.97245	9.3972	6	0	Median	1.1188	0.93548	NaN	1	0	Median	0.87111	1.0109	NaN	1	0	Median	1.1015	1.0704	11.613	3	0	Median	0.83551	0.87283	NaN	1	0	Median	571810000	283500000	288320000	145740000	59341000	86401000	150470000	85323000	65146000	150740000	66883000	83857000	124860000	71948000	52914000	51601	1580	48587	311743;311744;311745;311746;311747;311748	419604;419605;419606;419607;419608;419609;419610;419611;419612;419613;419614;419615	419615			12	
TQATLKPK	2	Unmodified	885.52837	0.5283668	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	7.2891	7.3542	2;3	0.0048186	4880	160511_QHF_FH_JSI12i_3	99.442	59.339			1.0303	1.0422	36.729	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57546	0.54175	NaN	1	0	Median	1.0098	1.0226	2.684	2	0	Median	958260000	526760000	431500000	0	0	0	0	0	0	105760000	61785000	43978000	852490000	464970000	387520000	51602	1580	48588	311749;311750;311751	419616;419617;419618	419616			3	
TQAVFNHTEDYVLLPDER	0	Unmodified	2146.0331	0.033097627	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	68.556	67.758	3	5.0003E-05	58501	160511_QHF_FH_JSI12i_3	86.539	76.79			1.0292	1.0902	12.864	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0292	1.0902	12.864	2	2	Median	111460000	48566000	62898000	0	0	0	0	0	0	0	0	0	111460000	48566000	62898000	51603	2226	48589	311752;311753	419619;419620	419620			2	
TQAYQDQK	1	Unmodified	980.45632	0.45632407	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	5.28	4		1			2				2	1	2	2	5.9329	3.606	2	0.00013853	3447	160511_QHF_FH_JSI12i_1	125.82	90.522			0.88979	1.0034	23.401	6	0	Median	1.4162	1.1854	NaN	1	0	Median	0.85827	1.0394	NaN	1	0	Median	0.97151	0.97206	48.716	2	0	Median	0.88901	0.95356	2.211	2	0	Median	894280000	496910000	397370000	152130000	56195000	95939000	272390000	159750000	112640000	232120000	147810000	84307000	237630000	133150000	104480000	51604	1460	48590	311754;311755;311756;311757;311758;311759;311760	419621;419622;419623;419624;419625;419626;419627;419628	419623			8	
TQAYQDQKPGTSGLR	1	Unmodified	1648.8169	0.81689726	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.95	5.09	1	8	6				1	3		2	6	5	6	20.101	17.582	2;3	8.4685E-07	14403	160511_QHF_FH_JSI12i_3	96.64	65.455			0.75209	0.79658	18.361	17	6	Median	1.2901	1.0746	0.41755	2	0	Median	0.67325	0.80739	20.666	6	3	Median	0.81113	0.78389	3.1732	4	0	Median	0.71882	0.71901	19.428	5	3	Median	999880000	563670000	436210000	253550000	122230000	131310000	248350000	154220000	94138000	356220000	207910000	148310000	141760000	79310000	62449000	51605	1460	48591	311761;311762;311763;311764;311765;311766;311767;311768;311769;311770;311771;311772;311773;311774;311775;311776;311777;311778;311779	419629;419630;419631;419632;419633;419634;419635;419636;419637;419638;419639;419640;419641;419642;419643;419644;419645;419646;419647;419648;419649;419650;419651;419652	419652			24	
TQAYQDQKPGTSGLRK	2	Unmodified	1776.9119	0.91186028	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS			3	0			4							2	2			15.175	14.218	3;4	9.9451E-05	11097	160511_QHF_FH_JSI9i_3	87.932	64.101			0.8634	0.84311	10.738	4	0	Median	1.0796	0.88654	2.2554	2	0	Median	0.6671	0.7591	9.9977	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	257310000	128870000	128430000	162760000	77945000	84814000	94549000	50928000	43620000	0	0	0	0	0	0	51606	1460	48592	311780;311781;311782;311783	419653;419654;419655;419656;419657;419658;419659;419660	419659			8	
TQAYQDQKPGTSGLRK	2	Acetyl (K)	1818.9224	0.92242497	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	34.876	25.298	3	0.0019119	14903	160513_QHF_FH_JSI11Kac_5	67.605	42.284			0.44827	1.0253	49.531	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89258	1.0693	NaN	1	0	Median	0.44827	0.44436	NaN	1	0	Median	0.9604	1.0253	NaN	1	0	Median	9341900	5355200	3986700	0	0	0	2362600	1538700	823980	4627700	2588500	2039200	2351500	1228000	1123500	51607	1460	48592	311784;311785;311786	419661;419662	419661	1447		2	
TQCALAASK	1	Unmodified	948.46987	0.46986564	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		15.048	7.6848	2	0.0065668	6426	160513_QHF_FH_JSI11Kac_3	58.981	41.133			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51608	4212	48593	311787	419663	419663			1	
TQCALAASKLLK	2	Acetyl (K)	1344.7435	0.74352131	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		71.143	60.22	3	0.0009519	32956	160513_QHF_FH_JSI11Kac_4	70.622	48.863			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1032600	1032600	0	0	0	0	0	0	0	1032600	1032600	0	0	0	0	51609	4212	48594	311788	419664	419664	3081		1	
TQDECILHFLR	0	Unmodified	1430.6976	0.69763375	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	0		By matching	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	66.116	65.555	3	0.051369	57283	160511_QHF_FH_JSI11i_2	18.098	13.249			1.4215	1.4735	34.691	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.85611	1.0489	NaN	1	0	Median	0.7451	0.7363	NaN	1	0	Median	1.4215	1.4735	NaN	1	0	Median	79053000	36824000	42229000	0	0	0	21288000	10338000	10949000	18175000	10743000	7432000	39590000	15743000	23848000	51610	3685;3907	48595	311789;311790;311791	419665	419665			1	
TQDIAVISAK	1	Unmodified	1044.5815	0.58152458	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	35.351	34.746	2	0.010554	31042	160511_QHF_FH_JSI10i_1	47.559	21.751			0.77623	0.84254	13.435	4	0	Linear	1.1147	0.93682	NaN	1	0	Median	0.72015	0.85839	NaN	1	0	Median	0.96255	0.93112	NaN	1	0	Median	1.1494	1.1737	NaN	1	0	Median	154830000	77832000	76997000	37959000	15977000	21982000	44528000	24644000	19884000	40574000	21320000	19254000	31769000	15891000	15877000	51611	2119	48596	311792;311793;311794;311795	419666;419667	419666			2	
TQDLPGVK	1	Unmodified	856.46543	0.46543219	268	O15235	MRPS12	28S ribosomal protein S12, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.255	21.718	2	0.0083499	18678	160511_QHF_FH_JSI11i_1	57.047	32.416			0.976	0.86263	10.543	3	0	Median	1.0542	0.86263	NaN	1	0	Median	0.66416	0.77235	NaN	1	0	Median	0.976	0.95357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	289450000	143870000	145580000	91620000	40702000	50919000	97858000	59973000	37884000	99975000	43196000	56778000	0	0	0	51612	268	48597	311796;311797;311798;311799	419668;419669;419670;419671;419672;419673	419668			6	
TQDPSSPGTTPPQAR	0	Unmodified	1538.7325	0.73249893	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	16.272	15.995	2	0.00035359	13433	160511_QHF_FH_JSI11i_1	77.062	41.521			0.70894	0.74622	6.5914	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.64174	0.7366	NaN	1	1	Median	0.78317	0.74622	NaN	1	0	Median	0.63348	0.66177	NaN	1	1	Median	79914000	51884000	28031000	0	0	0	29506000	21677000	7829000	30229000	16776000	13453000	20179000	13430000	6748500	51613	2352	48598	311800;311801;311802	419674;419675;419676	419674			3	
TQDQISNIK	1	Unmodified	1045.5404	0.54038805	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.532	17.047	2	3.4887E-08	14672	160511_QHF_FH_JSI12i_1	155.42	124.86			0.3702	0.36628	27.569	4	4	Median	0.40017	0.32729	NaN	1	1	Median	0.34248	0.40993	NaN	1	1	Median	0.58552	0.57071	NaN	1	1	Median	0.29303	0.31179	NaN	1	1	Median	6921300000	5378600000	1542700000	1438700000	1105300000	333420000	2010000000	1659700000	350340000	1279800000	782020000	497790000	2192700000	1831600000	361140000	51614	2579	48599	311803;311804;311805;311806	419677;419678;419679;419680	419678			4	
TQDTINR	0	Unmodified	846.41954	0.41954463	4116	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.8353	5.5974	2	0.023312	3604	160511_QHF_FH_JSI10i_1	58.782	37.08			0.80352	0.95247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80352	0.95247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94404000	54555000	39848000	0	0	0	94404000	54555000	39848000	0	0	0	0	0	0	51615	4116	48600	311807	419681	419681			1	
TQEEGEERAESEQEAYLRED	0	Unmodified	2397.0204	0.020420269	4939	Q9NR28	DIABLO	Diablo homolog, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	33.536	32.932	3	7.0706E-11	29284	160511_QHF_FH_JSI10i_1	134.07	130.68			1.0477	0.98095	11.246	4	0	Linear	1.4793	1.2226	NaN	1	0	Median	0.84015	0.9981	NaN	1	0	Median	1.1787	1.143	NaN	1	0	Median	0.93124	0.96297	NaN	1	0	Median	648600000	333950000	314650000	113300000	43421000	69883000	177650000	96721000	80929000	164720000	88333000	76387000	192920000	105480000	87447000	51616	4939	48601	311808;311809;311810;311811	419682;419683;419684;419685;419686;419687	419685			6	
TQEEIVAK	1	Unmodified	916.48656	0.48656157	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	3	2	17.459	13.242	2	0.00017513	8387	160513_QHF_FH_JSI12Kac_3	119.27	61.715			0.82266	0.84368	15.16	9	4	Median	0.98627	0.78352	NaN	1	1	Median	0.68368	0.79092	11.025	3	1	Median	1.0579	1.0295	18.053	3	1	Median	0.86911	0.93853	9.5678	2	1	Median	4997500000	3216000000	1781600000	1174600000	720800000	453840000	1316200000	974510000	341680000	1161500000	737260000	424260000	1345200000	783410000	561780000	51617	1034	48602	311812;311813;311814;311815;311816;311817;311818;311819;311820	419688;419689;419690;419691;419692;419693;419694	419694			7	
TQEELTPFFK	1	Unmodified	1238.6183	0.61830402	64	CON__P81644			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	3	2	3	66.646	64.794	2	2.1571E-25	55765	160511_QHF_FH_JSI12i_2	185.6	136.24		+	1.2878	1.4083	65.757	9	1	Median	0.37154	0.30898	4.8452	2	0	Median	0.78664	0.95315	20.163	2	1	Median	1.497	1.468	5.8732	2	0	Median	1.3315	1.4404	0.75644	3	0	Median	1164800000	542500000	622310000	177820000	128390000	49429000	247680000	133440000	114240000	393780000	144740000	249040000	345540000	135930000	209610000	51618	64	48603	311821;311822;311823;311824;311825;311826;311827;311828;311829;311830	419695;419696;419697;419698;419699;419700;419701;419702;419703;419704;419705;419706;419707;419708;419709;419710	419699			16	
TQEELTPFFKK	2	Acetyl (K)	1408.7238	0.72383172	64	CON__P81644			yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							3				1		2	76.486	65.914	2;3	0.0005114	35223	160513_QHF_FH_JSI12Kac_4	97.456	67.202		+	1.0622	1.1575	11.067	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0243	1.1951	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98979	1.0612	12.284	2	0	Median	28502000	15176000	13327000	0	0	0	11225000	6326800	4898400	0	0	0	17277000	8848800	8428400	51619	64	48604	311831;311832;311833	419711;419712;419713	419712	43		3	
TQEELTPFFKK	2	Unmodified	1366.7133	0.71326704	64	CON__P81644			yes	yes	0	0	0	1				By MS/MS	3	0			3										3	51.645	51.41	2;3	2.9765E-11	44054	160511_QHF_FH_JSI12i_3	140.78	129.57		+	1.2769	1.302	10.201	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2769	1.302	10.201	2	0	Median	284540000	124260000	160270000	0	0	0	0	0	0	0	0	0	284540000	124260000	160270000	51620	64	48604	311834;311835;311836	419714;419715;419716;419717	419715			4	
TQEEVAALK	1	Unmodified	987.52368	0.52367535	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	22.312	21.809	2	0.0029552	19141	160511_QHF_FH_JSI12i_1	61.691	32.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51621	3395	48605	311837	419718	419718			1	
TQEGSLSAR	0	Unmodified	947.46722	0.46722311	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	5.91	4	4				2	3			2	3	3	5	9.1592	6.4265	2	5.5907E-08	5833	160511_QHF_FH_JSI11i_1	142.92	110.99			0.99456	1.0313	9.4619	12	1	Median	1.1644	0.95551	4.9902	2	0	Median	0.80597	0.94322	7.2561	3	0	Plateau	1.064	1.0355	11.966	3	0	Median	0.97683	1.058	9.7804	4	1	Median	5090200000	2616100000	2474100000	1102500000	483850000	618640000	1390200000	745230000	645010000	1346100000	694590000	651520000	1251300000	692430000	558900000	51622	2094	48606	311838;311839;311840;311841;311842;311843;311844;311845;311846;311847;311848;311849;311850	419719;419720;419721;419722;419723;419724;419725;419726;419727;419728;419729;419730;419731;419732;419733;419734;419735;419736;419737;419738	419720			20	
TQEIQENLLSLEETMK	1	Unmodified	1904.9401	0.94010844	3900	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.732	86.282	2	3.7062E-30	78262	160511_QHF_FH_JSI10i_1	191.49	178.86			0.86762	0.85489	9.1534	4	1	Median	0.90842	0.72427	NaN	1	0	Median	0.74006	0.86094	NaN	1	0	Median	0.92703	0.88915	NaN	1	0	Median	0.82866	0.84889	NaN	1	1	Median	136510000	73189000	63326000	25367000	16140000	9226900	40134000	22033000	18100000	37355000	16677000	20678000	33658000	18338000	15320000	51623	3900	48607	311851;311852;311853;311854	419739;419740;419741;419742;419743	419742			5	
TQEKEQIK	2	Acetyl (K)	1044.5451	0.54513908	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1				By MS/MS	13	0						1							1	16.34	9.3379	2	0.0024079	6879	160513_QHF_FH_JSI12Kac_3	97.635	43.478		+	0.54606	0.59903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54606	0.59903	NaN	1	0	Median	13350000	8060000	5289600	0	0	0	0	0	0	0	0	0	13350000	8060000	5289600	51624	51	48608	311855	419744	419744	30		1	
TQEKPPK	2	Unmodified	826.45487	0.45486751	5594	Q9Y3E7	CHMP3	Charged multivesicular body protein 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.633	4.7254	3	0.016516	2236	160511_QHF_FH_JSI12i_3	47.849	30.885			1.0031	1.0019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0031	1.0019	NaN	1	0	Median	151260000	82142000	69120000	0	0	0	0	0	0	0	0	0	151260000	82142000	69120000	51625	5594	48609	311856	419745	419745			1	
TQELETTQK	1	Unmodified	1076.535	0.53496832	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.064	9.6831	2	0.0008808	7626	160511_QHF_FH_JSI12i_1	83.869	56.565			1.5065	2.3326	55.363	4	4	Linear	2.2223	1.8168	NaN	1	1	Median	1.2721	1.4796	NaN	1	1	Median	0.59843	0.5761	NaN	1	1	Median	1.7842	1.8603	NaN	1	1	Median	214690000	85308000	129380000	54796000	15918000	38879000	48564000	22921000	25643000	48007000	25177000	22830000	63318000	21292000	42026000	51626	1779	48610	311857;311858;311859;311860	419746;419747;419748;419749	419747			4	
TQEQLALEMAELTAR	0	Unmodified	1702.856	0.85598488	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.573	5	9	1							2	4	5	4	81.252	80.653	2;3	5.5448E-98	71195	160511_QHF_FH_JSI9i_2	261.41	220.01			0.99882	1.0143	16.361	14	6	Median	1.1539	0.98856	0.66081	2	0	Median	0.78176	0.98356	11.709	3	2	Plateau	0.98531	1.0038	19.002	5	3	Median	0.9903	1.0872	20.532	4	1	Median	2918700000	1461000000	1457700000	535600000	245860000	289740000	424180000	232740000	191440000	1181000000	571950000	609070000	777890000	410440000	367450000	51627	1270	48611	311861;311862;311863;311864;311865;311866;311867;311868;311869;311870;311871;311872;311873;311874;311875	419750;419751;419752;419753;419754;419755;419756;419757;419758;419759;419760;419761;419762;419763;419764;419765;419766;419767;419768	419761			18	
TQEQLEVLESLK	1	Unmodified	1415.7508	0.75077476	118	O00291	HIP1	Huntingtin-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		70.25	69.938	2	0.0015387	63332	160511_QHF_FH_JSI10i_1	61.932	44.068			0.62831	0.67078	12.623	2	1	Median	NaN	NaN	NaN	0	0	Median	0.51885	0.61351	NaN	1	0	Median	0.76087	0.73341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75259000	46683000	28576000	0	0	0	45849000	29733000	16116000	29410000	16950000	12460000	0	0	0	51628	118	48612	311876;311877	419769;419770	419770			2	
TQETLSQAGQK	1	Unmodified	1189.5939	0.59388018	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.54	4		1		3	2				2	3	3	2	13.877	10.005	2	4.6448E-48	8705	160511_QHF_FH_JSI9i_1	221.23	137.96			0.9258	0.9714	52.758	10	1	Median	0.50248	0.41976	112.48	2	1	Median	0.82598	0.98719	14.372	3	0	Median	1.0835	1.0483	12.664	3	0	Median	0.96454	1.0103	7.8384	2	0	Median	2253400000	1166600000	1086800000	546270000	268670000	277600000	590570000	314160000	276410000	532840000	272400000	260430000	583680000	311320000	272350000	51629	329	48613	311878;311879;311880;311881;311882;311883;311884;311885;311886;311887	419771;419772;419773;419774;419775;419776;419777;419778;419779;419780;419781;419782;419783	419781			13	
TQETPSAQMEGFLNR	0	Unmodified	1707.7886	0.7886336	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								3	2	2	3	60.519	59.861	2	0.00019883	52514	160511_QHF_FH_JSI9i_2	72.652	62.997			0.83147	0.84657	27.773	7	5	Median	0.81568	0.64518	NaN	1	1	Median	0.85437	1.0254	50.754	2	1	Median	1.0481	1.0337	8.8031	2	1	Median	0.81188	0.8288	3.0008	2	2	Median	309030000	163060000	145980000	25672000	14938000	10734000	68228000	36681000	31546000	101450000	47170000	54280000	113680000	64268000	49417000	51630	2162	48614	311888;311889;311890;311891;311892;311893;311894;311895;311896;311897	419784;419785;419786;419787;419788;419789;419790;419791;419792;419793;419794	419792			11	
TQFGEKIHNFGLIQEK	2	Acetyl (K)	1929.9949	0.99486163	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			76.46	70.21	3	2.6831E-05	38340	160513_QHF_FH_JSI10Kac_6	96.487	80.895			0.97597	1.1291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97597	1.1291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52233000	18836000	33397000	0	0	0	52233000	18836000	33397000	0	0	0	0	0	0	51631	1675	48615	311898	419795;419796	419795	1699		2	
TQFLPPNLLALFAPR	0	Acetyl (Protein N-term)	1738.977	0.97702672	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.68	4	5							4	2	4	4	3	104.04	101.93	2;3	1.416E-07	92017	160511_QHF_FH_JSI11i_2	138.25	119.12			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51632	910	48616	311899;311900;311901;311902;311903;311904;311905;311906;311907;311908;311909;311910;311911	419797;419798;419799;419800;419801;419802;419803;419804;419805;419806;419807;419808;419809	419804			13	
TQFVSPWK	1	Unmodified	991.51272	0.51271674	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	51.411	51.176	2	0.0095222	43900	160511_QHF_FH_JSI12i_3	64.42	37.818			0.72751	0.73718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72751	0.73718	NaN	1	1	Median	34622000	20115000	14507000	0	0	0	0	0	0	0	0	0	34622000	20115000	14507000	51633	107	48617	311912	419810	419810			1	
TQGFLALFSGDTGEIK	1	Unmodified	1682.8516	0.85155143	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.51	4	9	7					1	9	6	8	9	7	95.114	92.12	2;3	5.281E-63	44667	160513_QHF_FH_JSI9Kac_6	244	201.79			0.96973	0.95878	24.956	26	6	Median	1.0405	0.89191	7.8195	4	0	Linear	0.72244	0.86032	30.93	7	2	Median	0.97516	0.9335	26.477	8	2	Median	0.99516	1.0756	9.6566	7	2	Median	2257700000	1181000000	1076700000	413120000	196170000	216960000	578150000	347790000	230360000	684640000	354350000	330290000	581770000	282730000	299040000	51634	5487	48618	311913;311914;311915;311916;311917;311918;311919;311920;311921;311922;311923;311924;311925;311926;311927;311928;311929;311930;311931;311932;311933;311934;311935;311936;311937;311938;311939;311940;311941;311942	419811;419812;419813;419814;419815;419816;419817;419818;419819;419820;419821;419822;419823;419824;419825;419826;419827;419828;419829;419830;419831;419832;419833;419834;419835;419836;419837;419838;419839;419840;419841;419842;419843;419844;419845;419846;419847;419848;419849;419850;419851;419852;419853;419854;419855;419856;419857;419858;419859;419860;419861;419862;419863;419864;419865;419866;419867;419868;419869;419870;419871;419872;419873;419874;419875;419876	419858			66	
TQGIIPLAPISK	1	Unmodified	1236.7442	0.74417324	5039	Q9NVM9	ASUN	Protein asunder homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	1	2		70.751	70.236	2	0.00062275	62397	160511_QHF_FH_JSI9i_1	82.171	65.968			1.4043	1.1703	16.897	3	3	Median	1.4043	1.1703	NaN	1	1	Median	0.83968	0.96766	NaN	1	1	Median	1.4217	1.3555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	80108000	40459000	39649000	23149000	11327000	11822000	26990000	13810000	13180000	29970000	15322000	14647000	0	0	0	51635	5039	48619	311943;311944;311945;311946	419877;419878;419879;419880	419880			4	
TQGLMIMK	1	Unmodified	920.48234	0.48234459	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.683	42.301	2	0.023481	36232	160511_QHF_FH_JSI12i_2	54.205	15.967			0.92302	0.99686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92302	0.99686	NaN	1	1	Median	39833000	22225000	17608000	0	0	0	0	0	0	0	0	0	39833000	22225000	17608000	51636	2437	48620	311947	419881	419881			1	
TQGLVPEHVETR	0	Unmodified	1364.7048	0.70482762	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	26.866	26.036	2;3	4.2146E-05	22402	160511_QHF_FH_JSI9i_2	101.95	82.167			0.98955	0.97601	17.03	6	0	Median	1.1688	1.0024	5.0569	2	0	Median	0.9897	1.2048	NaN	1	0	Median	0.96629	0.97019	2.1272	2	0	Median	0.64974	0.7151	NaN	1	0	Median	557970000	270810000	287160000	121470000	52721000	68752000	25144000	13290000	11854000	389460000	191650000	197810000	21891000	13149000	8741500	51637	5161	48621	311948;311949;311950;311951;311952;311953	419882;419883;419884;419885;419886;419887;419888;419889;419890;419891	419884			10	
TQGQQVSSLK	1	Unmodified	1074.5669	0.56693715	4069	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	3	1	1	12.09	11.689	2	7.4618E-05	9612	160511_QHF_FH_JSI12i_1	101.38	69.446			0.92415	0.9296	25.291	6	3	Median	1.0854	0.88736	NaN	1	1	Median	0.9138	1.076	32.541	3	2	Median	0.65916	0.65065	NaN	1	0	Median	0.93463	0.97386	NaN	1	0	Median	436190000	224070000	212120000	84140000	31536000	52604000	163640000	91977000	71663000	93929000	47995000	45933000	94481000	52564000	41917000	51638	4069	48622	311954;311955;311956;311957;311958;311959	419892;419893;419894;419895;419896;419897;419898	419894			7	
TQGSETAGPPK	1	Unmodified	1071.5197	0.51965261	556	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	7.582	7.2114	2	0.0008599	4911	160511_QHF_FH_JSI11i_1	79.07	39.765			1.341	1.1199	16.214	3	3	Median	1.341	1.0846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4827	1.4575	NaN	1	1	Median	1.0866	1.1199	NaN	1	1	Median	157670000	67581000	90089000	60919000	23278000	37641000	0	0	0	44968000	17922000	27047000	51783000	26381000	25401000	51639	556	48623	311960;311961;311962	419899;419900;419901	419899			3	
TQGSSECISELSFSGPNALVPMDFLGNQEDIHNLQLR	0	Unmodified	4102.9364	0.93644341	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.96	100.84	4	0.052957	86645	160511_QHF_FH_JSI12i_2	5.1201	1.6171			1.1703	1.1868	20.06	4	0	Median	1.3792	1.1762	NaN	1	0	Median	0.99303	1.1974	NaN	1	0	Median	1.4076	1.4439	NaN	1	0	Median	0.82136	0.88767	NaN	1	0	Median	1313500000	599510000	713980000	330020000	152460000	177560000	231400000	122450000	108950000	519500000	201260000	318240000	232560000	123330000	109230000	51640	1660	48624	311963;311964;311965;311966	419902	419902			1	
TQGTNQIQK	1	Unmodified	1016.5251	0.52507234	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.008	6.6722	2	0.00057375	4541	160511_QHF_FH_JSI10i_1	78.149	51.547			0.87556	0.85058	9.0266	4	1	Median	1.0544	0.86408	NaN	1	0	Median	0.70702	0.83729	NaN	1	0	Median	1.0142	0.9757	NaN	1	1	Median	0.75588	0.78715	NaN	1	0	Median	246630000	124260000	122370000	74865000	36052000	38812000	61973000	33383000	28590000	46250000	23724000	22526000	63540000	31100000	32440000	51641	3436	48625	311967;311968;311969;311970	419903;419904;419905;419906	419905			4	
TQGVIKYMGPAGAK	2	Acetyl (K)	1461.765	0.76498503	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		60.811	49.76	2	0.016895	28295	160513_QHF_FH_JSI11Kac_4	49.5	12.976			0.42422	0.42103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42422	0.42103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4337400	2820100	1517300	0	0	0	0	0	0	4337400	2820100	1517300	0	0	0	51642	1557	48626	311971	419907	419907	1575		1	
TQGVPAVLK	1	Unmodified	911.54402	0.54401687	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		35.984	35.241	2	0.001792	31687	160511_QHF_FH_JSI11i_1	67.507	44.767			0.84763	0.76832	5.5434	2	0	Median	0.95761	0.79904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75028	0.73879	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	276330000	131330000	145000000	95722000	44214000	51508000	0	0	0	180600000	87115000	93490000	0	0	0	51643	1743	48627	311972;311973	419908;419909	419909			2	
TQHAILYMNPHK	1	Unmodified	1451.7344	0.73435361	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	4	1	3	31.06	25.833	3;4	7.7092E-05	20437	160511_QHF_FH_JSI12i_3	72.496	65.366			1.2333	1.2827	20.672	9	3	Median	1.4878	1.2669	29.583	2	0	Median	1.0861	1.2827	18.343	3	2	Median	1.2333	1.2054	NaN	1	0	Median	1.0796	1.1202	29.412	3	1	Plateau	287700000	137760000	149940000	45441000	16313000	29128000	36557000	18329000	18228000	6316200	2252200	4064000	199390000	100870000	98520000	51644	3267	48628	311974;311975;311976;311977;311978;311979;311980;311981;311982;311983	419910;419911;419912;419913;419914;419915;419916;419917;419918;419919;419920;419921	419916			12	
TQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVK	1	Unmodified	4081.9222	0.92219033	3432	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	72.615	72.175	4	2.4467E-11	64408	160511_QHF_FH_JSI11i_3	63.881	62.443			1.1336	1.0224	39.458	5	3	Median	1.3275	1.1146	NaN	1	1	Median	0.7073	0.86604	NaN	1	0	Median	1.1336	1.0224	NaN	1	0	Median	1.155	1.2245	73.382	2	2	Median	153670000	64098000	89576000	26659000	6737100	19922000	33062000	13856000	19206000	52631000	22329000	30302000	41322000	21176000	20146000	51645	3432	48629	311984;311985;311986;311987;311988	419922;419923;419924;419925;419926;419927;419928;419929	419922			8	
TQHEILR	0	Unmodified	895.48756	0.48756462	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.97		8	3						2	3	3	3	4	8.9315	7.3848	2;3	0.003936	6025	160511_QHF_FH_JSI12i_2	101.28	9.384			1.0587	1.115	16.947	11	2	Median	1.5041	1.3062	30.798	3	1	Plateau	1.0608	1.2949	8.2251	2	1	Median	1.0587	1.0958	5.2374	3	0	Median	0.96661	1.0333	7.7026	3	0	Median	2216700000	1038200000	1178600000	287600000	117850000	169750000	696690000	325540000	371160000	833650000	390130000	443520000	398780000	204650000	194130000	51646	1648	48630	311989;311990;311991;311992;311993;311994;311995;311996;311997;311998;311999;312000;312001	419930;419931;419932;419933;419934;419935;419936;419937;419938;419939	419932			10	
TQHGVLSQQFVELINK	1	Unmodified	1839.9843	0.98429694	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.02		3	6						1	4	2	2	2	86.622	84.958	2;3	2.5595E-06	60542	160511_QHF_FH_JSI9i_3	120.66	109.72			0.75868	14.967	121.42	8	2	Linear	0.61445	0.50316	51.604	2	0	Median	0.70476	0.85939	6.1358	2	0	Median	0.85605	0.8195	18.375	2	1	Median	0.16996	0.17656	260.26	2	1	Median	950040000	519450000	430590000	118040000	60549000	57488000	218730000	122820000	95912000	213970000	112150000	101820000	399310000	223940000	175370000	51647	2313	48631	312002;312003;312004;312005;312006;312007;312008;312009;312010;312011	419940;419941;419942;419943;419944;419945;419946;419947;419948	419943			9	
TQHIQQPR	0	Unmodified	1006.5308	0.53082642	1732	P51397	DAP	Death-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	4	3	3	5.7019	5.4425	2;3	0.00041494	3354	160511_QHF_FH_JSI11i_3	78.334	69.472			1.0273	0.96261	19.325	11	1	Median	1.2996	1.0912	NaN	1	0	Median	0.93353	1.1145	23.187	4	1	Median	1.1064	1.0403	13.875	3	0	Plateau	0.87803	0.88921	16.884	3	0	Median	4481700000	2255900000	2225900000	555180000	248490000	306690000	1163600000	626870000	536710000	1580100000	753230000	826830000	1182900000	627260000	555640000	51648	1732	48632	312012;312013;312014;312015;312016;312017;312018;312019;312020;312021;312022	419949;419950;419951;419952;419953;419954;419955;419956;419957;419958;419959	419951			8	
TQHLQELFSR	0	Unmodified	1257.6466	0.64658446	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		40.012	39.26	2	0.003101	32868	160511_QHF_FH_JSI10i_3	56.916	43.538			0.84327	0.8736	14.112	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85021	0.96527	NaN	1	0	Median	0.83639	0.79064	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62033000	32005000	30028000	0	0	0	38961000	19448000	19513000	23072000	12557000	10515000	0	0	0	51649	5301	48633	312023;312024;312025;312026	419960;419961;419962;419963;419964	419961			5	
TQHLSNDHICYFLYQILR	0	Unmodified	2320.1423	0.14227092	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.005	79.338	3	0.0002286	44378	160513_QHF_FH_JSI10Kac_6	93.753	18.435			1.1212	1.3415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1212	1.3415	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122810000	64493000	58316000	0	0	0	122810000	64493000	58316000	0	0	0	0	0	0	51650	1309	48634	312027	419965	419965			1	
TQHNGMNNIIR	0	Unmodified	1296.6357	0.63570219	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			17.493	16.782	2;3	0.0019458	14279	160511_QHF_FH_JSI10i_2	51.013	31.77			1.3334	1.6463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3334	1.6463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29024000	12998000	16025000	0	0	0	29024000	12998000	16025000	0	0	0	0	0	0	51651	3290	48635	312028;312029	419966;419967	419967			2	
TQIALSPNNHEVHIYK	1	Unmodified	1862.9639	0.96389585	3879	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	45.702	45.581	3;4	1.5056E-05	38876	160511_QHF_FH_JSI12i_3	91.657	79.741			0.90573	0.94083	31.914	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83499	0.76194	50.698	2	1	Median	0.90573	0.94083	6.365	2	0	Median	247530000	132300000	115240000	0	0	0	0	0	0	105340000	59888000	45448000	142200000	72412000	69787000	51652	3879	48636	312030;312031;312032;312033	419968;419969;419970;419971;419972	419971			4	
TQIAPGSQTVLGIGPGPADLIDK	1	Unmodified	2247.2111	0.21106199	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	92.075	91.674	2;3	3.7959E-19	83425	160511_QHF_FH_JSI12i_1	147.09	134.92			0.87865	0.88301	7.2587	8	0	Median	1.0503	0.86225	10.454	2	0	Median	0.71205	0.8461	3.936	2	0	Median	0.89379	0.86526	13.714	2	0	Median	0.87865	0.9073	1.7356	2	0	Median	808260000	437730000	370520000	142910000	72524000	70382000	190610000	115640000	74965000	297970000	152340000	145630000	176780000	97223000	79552000	51653	5593	48637	312034;312035;312036;312037;312038;312039;312040;312041	419973;419974;419975;419976;419977;419978;419979;419980;419981;419982;419983;419984;419985;419986;419987;419988;419989;419990;419991	419980			19	
TQIDHYVGIAR	0	Unmodified	1271.6622	0.66223452	654	O95197	RTN3	Reticulon-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.58		6	8					1	9	4	6	7	7	40.813	36.585	2;3	1.0228E-08	19833	160513_QHF_FH_JSI11Kac_6	97.779	92.563			0.92504	0.98419	29.743	22	8	Median	1.4325	1.2418	19.815	2	1	Median	0.99101	1.1766	28.18	6	2	Median	0.87668	0.90155	28.974	7	3	Median	0.85715	0.94806	28.286	7	2	Median	3708400000	1870400000	1838000000	32882000	12779000	20104000	845280000	459320000	385960000	1757300000	857720000	899540000	1072900000	540570000	532360000	51654	654	48638	312042;312043;312044;312045;312046;312047;312048;312049;312050;312051;312052;312053;312054;312055;312056;312057;312058;312059;312060;312061;312062;312063;312064;312065	419992;419993;419994;419995;419996;419997;419998;419999;420000;420001;420002;420003;420004;420005;420006;420007;420008;420009;420010;420011;420012;420013;420014;420015;420016;420017	420000			25	
TQIIQDFLRK	1	Unmodified	1260.719	0.71902112	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		61.373	61.373	3	0.013199	54555	160511_QHF_FH_JSI11i_3	37.426	13.575			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51655	1694	48639	312066	420018	420018			1	
TQILAASYELHK	1	Unmodified	1372.7351	0.73506511	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3		1	2	1	54.23	47.676	2;3	4.499E-05	40904	160511_QHF_FH_JSI12i_2	100.72	89.571			1.2582	1.219	19.028	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72746	0.83913	NaN	1	0	Median	1.2582	1.219	NaN	1	0	Median	0.84607	0.94915	NaN	1	0	Median	53052000	28481000	24570000	0	0	0	14671000	8818600	5852700	22984000	10864000	12120000	15396000	8798800	6597500	51656	2162	48640	312067;312068;312069;312070	420019;420020;420021;420022	420019			3	
TQILSPNTQDVLIFK	1	Unmodified	1715.9458	0.94578617	2167	Q01415	GALK2	N-acetylgalactosamine kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	87.774	87.013	2	9.0411E-07	75199	160511_QHF_FH_JSI12i_2	130.56	96.677			1.2652	1.3032	18.565	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2652	1.2927	19.236	2	2	Median	1.2945	1.3696	25.11	2	2	Median	71213000	31666000	39547000	0	0	0	0	0	0	41349000	19259000	22090000	29863000	12407000	17457000	51657	2167	48641	312071;312072;312073;312074	420023;420024;420025;420026	420024			4	
TQIPTQR	0	Unmodified	842.46102	0.46101552	1264	P25786	PSMA1	Proteasome subunit alpha type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.59	2	4	1				3			2	2	3	3	15.507	12.67	2	0.010566	10624	160511_QHF_FH_JSI11i_1	80.229	56.257			0.95539	1.0681	66.007	10	3	Median	2.002	1.6447	141.61	2	1	Median	1.1113	1.3227	22.325	2	0	Median	0.67703	0.66702	49.13	3	2	Median	1.4351	1.5669	51.735	3	0	Plateau	3750500000	2433800000	1316700000	1360500000	895210000	465240000	166970000	65266000	101700000	2008900000	1395700000	613190000	214220000	77608000	136610000	51658	1264	48642	312075;312076;312077;312078;312079;312080;312081;312082;312083;312084	420027;420028;420029;420030;420031;420032;420033;420034;420035	420027			9	
TQIQSQESDLK	1	Unmodified	1275.6307	0.63065962	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	20.774	20.466	2	3.4533E-06	17767	160511_QHF_FH_JSI12i_1	117.02	90.58			0.63806	0.6352	26.306	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54071	0.52738	NaN	1	1	Median	0.75294	0.76505	NaN	1	1	Median	183250000	106030000	77221000	0	0	0	0	0	0	96026000	57546000	38481000	87222000	48482000	38740000	51659	5230	48643	312085;312086	420036;420037;420038	420037			3	
TQIQSVEPYTK	1	Unmodified	1292.6612	0.66123147	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.823	35.215	2	1.3942E-29	31472	160511_QHF_FH_JSI10i_1	188.28	88.474			1.1449	1.011	51.116	4	0	Median	1.1124	0.89585	NaN	1	0	Median	0.62347	0.73605	NaN	1	0	Median	1.1784	1.1411	NaN	1	0	Median	2.2455	2.3692	NaN	1	0	Median	992900000	487490000	505410000	261730000	127030000	134700000	231780000	129470000	102310000	281580000	144150000	137430000	217810000	86842000	130970000	51660	1500	48644	312087;312088;312089;312090	420039;420040;420041;420042;420043;420044;420045	420042			7	
TQIVTEIISEIR	0	Unmodified	1400.7875	0.78749461	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.58	95.258	2	0.00058727	82196	160511_QHF_FH_JSI12i_2	84.507	44.885			0.71074	0.80823	32.527	4	3	Median	1.6692	1.4653	NaN	1	1	Median	0.68632	0.81574	NaN	1	1	Median	0.69869	0.70916	NaN	1	1	Median	0.72299	0.80079	NaN	1	0	Median	63974000	34467000	29507000	13292000	5834600	7457100	15445000	8196800	7248400	19488000	12485000	7003000	15749000	7950200	7798300	51661	4337	48645	312091;312092;312093;312094	420046;420047;420048;420049;420050	420047			5	
TQLAHGSPTGK	1	Unmodified	1095.5673	0.5672715	3744	Q8TF64	GIPC3	PDZ domain-containing protein GIPC3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	3	3	3	8.4173	8.1608	2;3	3.7313E-05	5601	160511_QHF_FH_JSI12i_3	69.352	62.749			0.98324	1.0166	23.191	8	3	Median	1.3357	1.1737	NaN	1	1	Median	0.61249	0.76407	22.635	2	1	Median	0.98895	0.95314	40.503	2	1	Median	1.0416	1.0576	2.6301	3	0	Plateau	527690000	284080000	243600000	13254000	6760700	6492900	127520000	73759000	53759000	60368000	30273000	30095000	326550000	173290000	153260000	51662	3744	48646	312095;312096;312097;312098;312099;312100;312101;312102;312103;312104	420051;420052;420053;420054;420055;420056;420057;420058;420059;420060;420061;420062	420061			12	
TQLAVCQQR	0	Unmodified	1102.5553	0.55532661	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.59	5	4				2	2			2	3	4	4	22.106	19.131	2	1.2432E-08	16285	160511_QHF_FH_JSI11i_1	152.63	106.2			1.0342	0.99223	19.516	12	0	Median	1.1801	0.99223	2.3742	2	0	Median	0.81821	0.96426	8.4854	3	0	Median	0.88981	0.87207	6.5438	3	0	Plateau	1.2441	1.3277	12.63	4	0	Median	2078500000	1046600000	1031900000	278530000	130500000	148030000	668640000	379880000	288750000	509900000	276390000	233520000	621480000	259870000	361600000	51663	2193	48647	312105;312106;312107;312108;312109;312110;312111;312112;312113;312114;312115;312116;312117	420063;420064;420065;420066;420067;420068;420069;420070;420071;420072;420073;420074;420075;420076;420077;420078	420063			16	
TQLEELEDELQATEDAK	1	Unmodified	1960.9113	0.91131074	1436;1437;1445	P35579;P35580;P35749	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.07	0.258	13	1								6	3	3	2	81.372	80.844	2;3	2.5772E-266	73412	160511_QHF_FH_JSI10i_1	429.37	411.04			0.9459	0.94897	16.758	11	4	Median	0.99546	0.8179	14.843	4	3	Median	0.86107	1.0135	7.7908	2	0	Median	1.2389	1.1966	28.667	3	1	Plateau	0.90692	0.94716	0.27131	2	0	Median	1755100000	939650000	815420000	270200000	136280000	133920000	367950000	202460000	165500000	721880000	392280000	329600000	395030000	208630000	186400000	51664	1436;1437;1445	48648	312118;312119;312120;312121;312122;312123;312124;312125;312126;312127;312128;312129;312130;312131	420079;420080;420081;420082;420083;420084;420085;420086;420087;420088;420089;420090;420091;420092;420093;420094;420095;420096;420097;420098;420099;420100;420101;420102;420103;420104;420105;420106;420107;420108;420109;420110;420111;420112;420113	420098			35	
TQLEQLPEHIK	1	Unmodified	1334.7194	0.71941505	2106	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		5								1	1	1	2	42.175	41.128	2;3	0.00082922	35321	160511_QHF_FH_JSI12i_2	79.659	55.57			1.058	1.3002	16.615	5	1	Median	1.5145	1.3002	NaN	1	0	Median	1.058	1.3054	NaN	1	0	Median	1.0542	1.0738	NaN	1	0	Median	1.1771	1.3085	28.252	2	1	Median	498930000	242950000	255980000	109400000	46408000	62992000	81810000	40023000	41787000	164100000	80368000	83728000	143620000	76149000	67470000	51665	2106	48649	312132;312133;312134;312135;312136	420114;420115;420116;420117	420115			2	
TQLEQLYQWAQVK	1	Unmodified	1633.8464	0.84640648	1623	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.69		4						5	9	4	4	5	5	83.516	76.264	2;3	2.1305E-196	40238	160513_QHF_FH_JSI9Kac_6	333.38	282.12			0.95532	0.95346	33.982	18	6	Median	1.3536	1.154	58.313	4	1	Median	0.98404	1.1763	39.827	4	1	Median	0.94872	0.91082	19.597	5	1	Median	0.85801	0.94186	25.048	5	3	Median	15561000000	8068000000	7492800000	2860200000	997830000	1862400000	3649000000	1961100000	1687900000	4005300000	2124400000	1880900000	5046300000	2984700000	2061600000	51666	1623	48650	312137;312138;312139;312140;312141;312142;312143;312144;312145;312146;312147;312148;312149;312150;312151;312152;312153;312154	420118;420119;420120;420121;420122;420123;420124;420125;420126;420127;420128;420129;420130;420131;420132;420133;420134;420135;420136;420137;420138;420139;420140;420141;420142;420143;420144;420145;420146;420147	420136			30	
TQLEVRPVVVPK	1	Unmodified	1363.8187	0.81873516	5744	Q9Y6N7	ROBO1	Roundabout homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	48.907	48.352	3	0.0024417	42652	160511_QHF_FH_JSI10i_2	53.034	43.246			0.97112	1.024	10.222	5	0	Median	1.2219	1.0525	NaN	1	0	Median	0.88841	1.0866	NaN	1	0	Median	0.96244	0.92625	14.19	2	0	Median	0.97112	0.97065	NaN	1	0	Median	276600000	137440000	139160000	34211000	14580000	19630000	54457000	29049000	25407000	126120000	62684000	63434000	61812000	31123000	30688000	51667	5744	48651	312155;312156;312157;312158;312159	420148;420149;420150;420151;420152;420153	420151			6	
TQLEWTEAILEDEQTQR	0	Unmodified	2088.9964	0.99637777	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		83.558	83.411	2;3	2.4511E-16	76094	160511_QHF_FH_JSI11i_1	117.92	103.35			1.5516	1.8332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5516	1.8332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15581000	4986700	10595000	0	0	0	15581000	4986700	10595000	0	0	0	0	0	0	51668	5213	48652	312160;312161;312162	420154;420155;420156	420155			3	
TQLGEDHEK	1	Unmodified	1055.4884	0.48835248	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	2	1	6.6152	6.2843	2	0.00035396	4071	160511_QHF_FH_JSI11i_2	82.287	58.519			0.94558	0.91647	11.675	4	0	Median	1.1324	0.96975	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94558	0.92334	9.0487	2	0	Median	0.68882	0.76564	NaN	1	0	Median	122710000	65099000	57613000	20651000	9967800	10684000	0	0	0	74052000	39682000	34370000	28010000	15449000	12560000	51669	485	48653	312163;312164;312165;312166;312167;312168	420157;420158;420159;420160;420161;420162;420163;420164	420161			8	
TQLIFGSVTNIPAK	1	Unmodified	1487.8348	0.83477916	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15	0								3			1	2		80.506	69.998	2;3	8.0293E-05	37080	160513_QHF_FH_JSI11Kac_5	98.353	73.499			1.1817	1.1561	28.197	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2005	1.3606	NaN	1	0	Median	0.9744	0.9531	27.302	2	0	Median	NaN	NaN	NaN	0	0	Median	20925000	10211000	10714000	0	0	0	2161600	963750	1197800	18764000	9246800	9516700	0	0	0	51670	4653	48654	312169;312170;312171	420165;420166;420167	420165			3	
TQLIQLSTLLR	0	Unmodified	1284.7765	0.776536	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			92.988	91.965	2	0.00057919	76768	160511_QHF_FH_JSI10i_3	69.979	42.864			0.97272	0.95289	17.777	2	0	Median	1.2909	1.0805	NaN	1	0	Median	0.73299	0.84034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23833000	11485000	12348000	12468000	5447700	7020700	11364000	6036900	5327300	0	0	0	0	0	0	51671	3699	48655	312172;312173	420168;420169;420170	420169			3	
TQLLQDVQDENK	1	Unmodified	1429.7049	0.7048872	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				1	2	3	2	46.234	41.241	2	1.5272E-31	36880	160511_QHF_FH_JSI11i_1	221.6	182.29			0.96575	1.0327	24.045	8	1	Median	0.8988	0.73186	NaN	1	0	Median	0.91185	1.0578	7.6525	2	0	Median	1.0599	1.0399	36.916	3	1	Median	1.0068	1.065	5.3523	2	0	Median	757070000	376250000	380820000	134570000	43477000	91097000	206120000	115930000	90191000	197930000	98933000	99000000	218440000	117910000	100530000	51672	3328	48656	312174;312175;312176;312177;312178;312179;312180;312181	420171;420172;420173;420174;420175;420176;420177;420178;420179;420180	420171			10	
TQLNSSSLQK	1	Unmodified	1104.5775	0.57750184	3214	Q7KZI7	MARK2	Serine/threonine-protein kinase MARK2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.04	20.548	2	0.0045855	18033	160511_QHF_FH_JSI12i_1	65.305	49.102			0.4003	0.42014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4003	0.42014	NaN	1	1	Median	78184000	53337000	24848000	0	0	0	0	0	0	0	0	0	78184000	53337000	24848000	51673	3214	48657	312182	420181	420181			1	
TQLPTWPPEFKPLEILQK	2	Unmodified	2164.1932	0.19322708	3082	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	yes	yes	0	0	0	1		By matching	By MS/MS	By matching	3	0			3								1	1	1	101.31	101.27	3	0.0019198	90337	160511_QHF_FH_JSI11i_3	47.397	38.578			0.87587	0.81341	13.471	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.54908	0.64804	NaN	1	0	Median	0.87587	0.81341	NaN	1	0	Median	0.81586	0.82294	NaN	1	0	Median	281330000	180780000	100550000	0	0	0	54316000	35044000	19272000	140770000	85220000	55547000	86250000	60515000	25736000	51674	3082	48658	312183;312184;312185	420182	420182			1	
TQLQLDER	0	Unmodified	1001.5142	0.5141733	1792	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.42	5.36	6	3				1	2			3	2	2	5	30.447	27.159	2	1.5323E-09	23576	160511_QHF_FH_JSI9i_1	140.83	62.912			0.99674	1.0598	13.38	10	2	Median	1.3112	1.0882	9.0755	2	1	Median	0.86388	1.0369	8.4109	2	0	Median	1.035	1.01	14.861	2	0	Median	0.99037	1.0583	19.686	4	1	Median	1491000000	699940000	791010000	356150000	140270000	215880000	513480000	258580000	254890000	378580000	169450000	209130000	242750000	131650000	111100000	51675	1792	48659	312186;312187;312188;312189;312190;312191;312192;312193;312194;312195;312196;312197	420183;420184;420185;420186;420187;420188;420189;420190;420191;420192;420193;420194;420195	420192			13	
TQLQQLGVTLSMTR	0	Unmodified	1574.845	0.84502627	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	73.877	73.324	2	6.7061E-05	63599	160511_QHF_FH_JSI12i_3	116.24	81.35			0.80861	0.75801	12.876	2	2	Median	0.97936	0.83026	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66763	0.69204	NaN	1	1	Median	34405000	19457000	14948000	9444200	4835800	4608400	0	0	0	0	0	0	24961000	14621000	10340000	51676	3258	48660	312198;312199	420196;420197	420197			2	
TQLVNVAIFGPPWMAFK	1	Unmodified	1918.0175	0.017511325	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	3	3	2	3	98.602	92.45	2;3	2.4609E-128	50334	160513_QHF_FH_JSI9Kac_6	321.01	290.12			1.0437	1.0087	21.845	11	2	Median	0.97331	0.83596	22.369	3	0	Plateau	0.83734	1.0087	17.88	3	1	Median	1.1247	1.0561	9.7347	2	0	Median	1.0598	1.1219	9.5051	3	1	Plateau	2042100000	982280000	1059800000	456700000	214870000	241830000	464420000	229860000	234560000	575430000	267640000	307790000	545560000	269900000	275660000	51677	1554	48661	312200;312201;312202;312203;312204;312205;312206;312207;312208;312209;312210	420198;420199;420200;420201;420202;420203;420204;420205;420206;420207;420208;420209;420210;420211;420212;420213;420214	420204			17	
TQLVNVAIFGPPWMAFK	1	Oxidation (M)	1934.0124	0.012425947	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			94.916	89.195	2	0.00020152	51363	160513_QHF_FH_JSI10Kac_6	146.79	98.647			0.85339	1.0193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85339	1.0193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31017000	24325000	6692400	0	0	0	31017000	24325000	6692400	0	0	0	0	0	0	51678	1554	48661	312211	420215	420215		1223	1	
TQLVSNLK	1	Unmodified	901.52328	0.52328142	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.36	4	4	4				3	1		4	4	4	4	32.037	28.944	2	0.0013208	26093	160511_QHF_FH_JSI12i_1	91.069	18.835			0.85961	0.94034	20.38	15	3	Median	1.2379	1.0237	24.194	4	2	Median	0.74713	0.90681	5.4202	3	0	Plateau	0.9761	0.95189	21.141	4	1	Median	0.72347	0.76534	27.259	4	0	Median	3460000000	1820300000	1639700000	683160000	306650000	376520000	901780000	459440000	442340000	1050600000	609040000	441510000	824540000	445200000	379350000	51679	773	48662	312212;312213;312214;312215;312216;312217;312218;312219;312220;312221;312222;312223;312224;312225;312226;312227	420216;420217;420218;420219;420220;420221;420222;420223;420224;420225;420226;420227;420228;420229;420230;420231;420232;420233;420234;420235;420236;420237;420238	420222			23	
TQLVSNLKK	2	Unmodified	1029.6182	0.61824444	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	4	1	1	21.738	20.78	2;3	0.00073864	16665	160511_QHF_FH_JSI9i_3	91.087	62.869			1.5872	1.737	118.91	9	8	Median	2.4094	1.987	84.017	3	3	Median	0.43168	0.48962	132.72	4	3	Median	3.9932	3.7761	NaN	1	1	Median	1.7355	1.737	NaN	1	1	Median	1292100000	627530000	664540000	607170000	250770000	356400000	513150000	302660000	210500000	80064000	22571000	57493000	91679000	51528000	40151000	51680	773	48663	312228;312229;312230;312231;312232;312233;312234;312235;312236	420239;420240;420241;420242;420243;420244;420245;420246;420247	420244			9	
TQLVWLVR	0	Unmodified	1013.6022	0.60220045	3028	Q68E01	INTS3	Integrator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			76.982	69.548	2	0.0027053	38437	160513_QHF_FH_JSI10Kac_6	89.355	65.334			1.1024	1.1121	7.6886	2	1	Median	1.3561	1.1742	NaN	1	1	Median	0.89612	1.0532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	279410000	145660000	133750000	47465000	21889000	25576000	231940000	123770000	108170000	0	0	0	0	0	0	51681	3028	48664	312237;312238	420248;420249;420250	420250			3	
TQLWASEPGTPPLPTSLPSQNPILK	1	Unmodified	2671.4221	0.4221174	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	100.85	100.77	3	9.0237E-17	91484	160511_QHF_FH_JSI11i_1	120.67	113.64			0.96918	0.96741	13.053	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81254	0.96741	NaN	1	0	Median	0.96918	0.92341	NaN	1	0	Median	1.1583	1.1806	NaN	1	0	Median	267570000	138190000	129390000	0	0	0	75977000	47250000	28727000	107350000	51315000	56036000	84246000	39623000	44623000	51682	4521	48665	312239;312240;312241	420251;420252;420253;420254	420252			4	
TQMAEVLPSPR	0	Unmodified	1227.6282	0.6281572	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	47.555	47.129	2	0.0013034	42897	160511_QHF_FH_JSI12i_1	69.276	44.455			0.67865	0.81984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67865	0.81984	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79762000	49839000	29922000	0	0	0	79762000	49839000	29922000	0	0	0	0	0	0	51683	999	48666	312242;312243	420255;420256	420255			2	
TQMDGMSLLPILR	0	Unmodified	1473.7684	0.76835585	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	98.785	98.665	2	3.5612E-05	84933	160511_QHF_FH_JSI12i_2	116.55	97.766			1.0244	1.1348	5.982	5	1	Median	1.3288	1.1532	NaN	1	0	Median	0.86362	1.0384	3.394	2	1	Median	1.1534	1.1661	NaN	1	0	Median	1.0244	1.1348	NaN	1	0	Median	355060000	167690000	187370000	77907000	33767000	44140000	87916000	47878000	40038000	85763000	39055000	46708000	103480000	46991000	56486000	51684	1081	48667	312244;312245;312246;312247;312248	420257;420258;420259;420260;420261;420262;420263	420257			7	
TQMEMLTK	1	Unmodified	980.46709	0.46708845	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	32.918	32.316	2	0.017233	28867	160511_QHF_FH_JSI10i_1	48.794	17.505			0.9166	0.96832	3.1678	4	0	Median	1.1899	0.98898	NaN	1	0	Median	0.85134	0.98915	NaN	1	0	Median	0.96515	0.94809	NaN	1	0	Median	0.8705	0.92838	NaN	1	0	Median	470870000	230250000	240630000	95063000	50684000	44379000	149630000	68056000	81573000	120390000	59617000	60772000	105790000	51889000	53903000	51685	3896	48668	312249;312250;312251;312252	420264;420265	420265			2	
TQMLDQEELLASTR	0	Unmodified	1633.7981	0.79813565	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.918	62.868	2	2.7954E-05	55831	160511_QHF_FH_JSI9i_1	162.72	125.17			1.0584	0.86677	NaN	1	1	Median	1.0584	0.86677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92120000	37486000	54635000	92120000	37486000	54635000	0	0	0	0	0	0	0	0	0	51686	1400	48669	312253	420266;420267	420266			2	
TQMLDQEELLASTRR	0	Unmodified	1789.8992	0.89924668	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	55.418	54.776	3	2.5243E-05	48337	160511_QHF_FH_JSI10i_2	91.592	80.33			0.97158	1.0254	13.716	5	2	Median	NaN	NaN	NaN	0	0	Median	0.934	1.0836	10.513	2	1	Median	1.1605	1.1283	13.524	2	0	Median	0.84019	0.87393	NaN	1	1	Median	407410000	205070000	202340000	0	0	0	176460000	98544000	77911000	193360000	83773000	109590000	37592000	22749000	14843000	51687	1400	48670	312254;312255;312256;312257;312258	420268;420269;420270;420271;420272	420270			5	
TQMMDLELAMLR	0	Unmodified	1450.6982	0.69822738	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				27.789	26.421	3	0.056183	21434	160511_QHF_FH_JSI9i_3	17.211	12.228			1.1234	0.92542	NaN	1	0	Median	1.1234	0.92542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67841000	27294000	40547000	67841000	27294000	40547000	0	0	0	0	0	0	0	0	0	51688	1305	48671	312259	420273	420273			1	
TQMNSFLLSTASQQEIATLDNK	1	Unmodified	2439.1952	0.19515393	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			90.129	90.046	3	0.012169	81723	160511_QHF_FH_JSI10i_1	33.342	25.808			0.55078	0.6205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55078	0.6205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32540000	22641000	9898900	0	0	0	32540000	22641000	9898900	0	0	0	0	0	0	51689	4093	48672	312260	420274	420274			1	
TQMTSAVR	0	Unmodified	892.44365	0.44365089	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.86	0.35	1	6								1	1	3	2	11.741	11.287	2	0.00095099	8627	160511_QHF_FH_JSI12i_2	96.034	55.931			0.92434	1.0005	18.118	7	0	Median	1.1109	0.94981	NaN	1	0	Median	0.82739	1.0005	NaN	1	0	Median	0.92434	0.93622	17.014	3	0	Median	1.0682	1.2084	21.813	2	0	Median	600200000	324960000	275240000	88160000	40052000	48108000	62899000	37230000	25669000	306230000	172370000	133850000	142910000	75301000	67610000	51690	2094	48673	312261;312262;312263;312264;312265;312266;312267	420275;420276;420277;420278;420279;420280	420276			6	
TQMTSAVREPK	1	Unmodified	1246.634	0.63397086	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3.9	3.73		3	6					1		5	3	2		17.349	15.569	2;3	0.00079756	12423	160511_QHF_FH_JSI9i_3	60.301	49.137			0.99262	1.0695	25.205	9	2	Median	1.3245	1.0929	33.685	5	2	Median	0.7968	0.91966	13.686	3	0	Plateau	0.99031	0.93378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1570800000	818370000	752420000	723260000	333700000	389550000	724010000	423400000	300600000	123520000	61260000	62260000	0	0	0	51691	2094	48674	312268;312269;312270;312271;312272;312273;312274;312275;312276;312277	420281;420282;420283;420284;420285;420286;420287	420284			7	
TQNDVLHAENVK	1	Unmodified	1366.6841	0.68409218	1426	P35241	RDX	Radixin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.59	5.24	4	9					4			3	5	5	4	23.374	20.675	2;3	5.727E-07	13297	160513_QHF_FH_JSI11Kac_4	104.17	91.906			0.98893	1.0106	52.417	16	4	Median	1.2596	1.0542	14.363	3	2	Median	0.86348	1.0546	84.126	5	2	Median	1.0249	1.0169	5.5973	4	0	Median	0.71798	0.80274	18.451	4	0	Median	1560000000	790150000	769830000	307740000	138720000	169020000	545350000	257500000	287850000	417710000	219010000	198700000	289190000	174920000	114270000	51692	1426	48675	312278;312279;312280;312281;312282;312283;312284;312285;312286;312287;312288;312289;312290;312291;312292;312293;312294	420288;420289;420290;420291;420292;420293;420294;420295;420296;420297;420298;420299;420300;420301;420302;420303;420304;420305;420306;420307;420308;420309;420310;420311;420312;420313	420299			26	
TQNGEIVQFK	1	Unmodified	1162.5982	0.59823728	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				36.497	35.264	2	0.00074291	31067	160511_QHF_FH_JSI9i_1	84.213	40.966			1.273	1.0864	NaN	1	1	Median	1.273	1.0864	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28356000	10672000	17684000	28356000	10672000	17684000	0	0	0	0	0	0	0	0	0	51693	5202	48676	312295	420314	420314			1	
TQNILLDNEFHVK	1	Unmodified	1569.8151	0.81510635	324	O43353	RIPK2	Receptor-interacting serine/threonine-protein kinase 2	yes	yes	0	0	0	0		By MS/MS		By matching	2	0		2									1		1	62.642	61.559	3	0.001716	54421	160511_QHF_FH_JSI10i_2	51.643	41.844			0.54883	0.63992	82.508	2	0	Median	NaN	NaN	NaN	0	0	Median	0.28267	0.35706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0656	1.1468	NaN	1	0	Median	65430000	39991000	25439000	0	0	0	40901000	28309000	12592000	0	0	0	24529000	11683000	12847000	51694	324	48677	312296;312297	420315;420316	420316			2	
TQNNLESDYLAR	0	Unmodified	1422.6739	0.67392142	3188	Q6ZSR9		Uncharacterized protein FLJ45252	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.13	37.846	2	0.00053849	34138	160511_QHF_FH_JSI11i_1	84.479	62.629			0.81591	0.78652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81591	0.78652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	157700000	82307000	75391000	0	0	0	0	0	0	157700000	82307000	75391000	0	0	0	51695	3188	48678	312298	420317	420317			1	
TQNPMVTGTSVLGVK	1	Unmodified	1530.8076	0.80757813	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.68	4.55	9	9	3				4			7	5	8	5	63.694	61.161	2;3	7.2174E-17	55858	160511_QHF_FH_JSI12i_1	170.66	155.39			0.93836	0.98248	13.897	23	7	Median	1.0418	0.87062	10.202	6	3	Median	0.8281	1.0278	10.754	5	1	Median	1.0023	0.9982	18.157	8	3	Median	1.083	1.1114	11.237	4	0	Linear	4715300000	2366400000	2348900000	1168600000	563010000	605560000	1090700000	603450000	487220000	1458300000	691790000	766540000	997700000	508130000	489560000	51696	1301	48679	312299;312300;312301;312302;312303;312304;312305;312306;312307;312308;312309;312310;312311;312312;312313;312314;312315;312316;312317;312318;312319;312320;312321;312322;312323	420318;420319;420320;420321;420322;420323;420324;420325;420326;420327;420328;420329;420330;420331;420332;420333;420334;420335;420336;420337;420338;420339;420340;420341;420342;420343;420344;420345;420346;420347;420348;420349;420350;420351;420352;420353;420354;420355;420356;420357;420358;420359;420360;420361;420362;420363;420364;420365	420333			48	
TQNPMVTGTSVLGVK	1	Oxidation (M)	1546.8025	0.80249275	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	6.43	4						3			1	2	2	2	52.068	47.068	2	0.00069854	41886	160511_QHF_FH_JSI9i_1	107.39	72.854			0.74558	0.81341	28.828	7	4	Median	1.0166	0.83126	NaN	1	1	Median	0.74203	0.87982	29.208	2	1	Median	0.5169	0.50872	16.485	2	1	Median	0.79178	0.83713	4.0652	2	1	Median	366500000	205830000	160660000	74140000	33585000	40555000	82065000	50333000	31732000	108560000	62583000	45977000	101730000	59332000	42399000	51697	1301	48679	312324;312325;312326;312327;312328;312329;312330	420366;420367;420368;420369;420370;420371	420370		952	6	
TQNVLGEK	1	Unmodified	887.47125	0.47124585	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.39	4	4	1		1	1	2			3	3	3	4	16.159	13.344	2	0.00013559	11267	160511_QHF_FH_JSI10i_1	126.07	36.772			0.76252	0.80556	19.287	13	1	Median	0.65299	0.5466	36.633	3	0	Plateau	0.65636	0.78421	2.7182	3	0	Plateau	0.81657	0.79366	21.779	3	0	Median	0.79004	0.84911	14.417	4	1	Median	12856000000	7317900000	5538400000	2541100000	1334600000	1206500000	3841600000	2201100000	1640600000	3278600000	2015400000	1263200000	3194900000	1766800000	1428100000	51698	1227	48680	312331;312332;312333;312334;312335;312336;312337;312338;312339;312340;312341;312342;312343	420372;420373;420374;420375;420376;420377;420378;420379;420380;420381;420382;420383;420384;420385;420386;420387;420388;420389;420390;420391;420392	420378			21	
TQNVLGEKGR	1	Acetyl (K)	1142.6044	0.60438529	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	2	1	32.069	23.233	2	0.0013046	14152	160513_QHF_FH_JSI11Kac_3	85.958	65.088			0.44614	0.49042	74.076	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1	1.2825	2.4787	2	0	Median	0.30312	0.29612	6.4297	2	0	Median	0.44614	0.49042	NaN	1	0	Median	51991000	33462000	18529000	0	0	0	17791000	8335000	9455500	28952000	21440000	7511700	5248500	3686500	1562000	51699	1227	48681	312344;312345;312346;312347;312348	420393;420394;420395;420396	420394	1110		3	
TQPDGTSVPGEPASPISQR	0	Unmodified	1922.9334	0.93338358	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	44.47	43.808	2	2.8711E-32	39558	160511_QHF_FH_JSI11i_1	186.56	163.69			0.92573	0.98206	19.578	5	2	Median	1.5646	1.3481	NaN	1	0	Median	0.76447	0.88974	NaN	1	0	Median	0.87288	0.81728	NaN	1	0	Median	0.9798	1.0424	8.4265	2	2	Median	217050000	105080000	111970000	37193000	15738000	21454000	39541000	20657000	18884000	50593000	25474000	25119000	89721000	43210000	46511000	51700	2587	48682	312349;312350;312351;312352;312353	420397;420398;420399;420400;420401;420402;420403	420397			7	
TQPFISK	1	Unmodified	819.44905	0.44905385	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		25.727	24.825	2	0.0028879	21683	160511_QHF_FH_JSI10i_1	102.71	61.211			0.78902	0.94729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78902	0.94729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53076000	22355000	30722000	0	0	0	53076000	22355000	30722000	0	0	0	0	0	0	51701	1929	48683	312354;312355;312356;312357	420404;420405;420406;420407	420404			4	
TQPMTAQAASYR	0	Unmodified	1323.6241	0.62413446	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	5.07	5	3					2			2	3	2	3	27.581	24.724	2	3.8486E-14	22128	160511_QHF_FH_JSI12i_1	131.09	115.21			0.94714	0.98904	10.825	8	1	Median	1.0726	0.93733	NaN	1	0	Median	0.7026	0.95148	14.218	3	0	Plateau	1.0955	1.0684	3.0427	2	0	Median	0.89714	0.97559	9.5299	2	1	Median	1254200000	660010000	594220000	104500000	50157000	54346000	396980000	219920000	177060000	399050000	209010000	190050000	353680000	180920000	172760000	51702	4197	48684	312358;312359;312360;312361;312362;312363;312364;312365;312366;312367	420408;420409;420410;420411;420412;420413;420414;420415;420416;420417;420418;420419;420420;420421;420422	420413			15	
TQPMTAQAASYR	0	Oxidation (M)	1339.619	0.61904908	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.584	24.887	2	0.00034886	21815	160511_QHF_FH_JSI10i_1	78.513	69.65			0.81713	0.93861	27.473	3	0	Median	1.1399	0.93861	NaN	1	0	Median	0.81713	0.96376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57483	0.59131	NaN	1	0	Median	151500000	86366000	65131000	53328000	25633000	27695000	46207000	28540000	17667000	0	0	0	51963000	32193000	19770000	51703	4197	48684	312368;312369;312370;312371	420423;420424;420425;420426	420425		2409	4	
TQPPEDISCIAWNR	0	Unmodified	1685.7832	0.78315429	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	64.226	63.587	2	0.0012501	57902	160511_QHF_FH_JSI12i_1	61.344	29.014			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51704	636	48685	312372	420427	420427			1	
TQPSSGVDSAVGTLPATSPQSTSVQAK	1	Unmodified	2600.293	0.29295372	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.855	54.195	3	3.1228E-07	49129	160511_QHF_FH_JSI11i_1	57.347	47.089			1.0417	1.0615	11.442	4	0	Median	1.0526	0.86865	NaN	1	0	Median	0.8942	1.0529	NaN	1	0	Median	1.1683	1.1288	NaN	1	0	Median	1.031	1.0702	NaN	1	0	Median	331360000	166050000	165310000	85001000	38293000	46708000	88684000	39865000	48819000	78000000	42970000	35030000	79674000	44920000	34754000	51705	2409	48686	312373;312374;312375;312376	420428;420429;420430;420431;420432	420429			5	
TQPTEDNK	1	Unmodified	931.42469	0.42468959	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		5.2073	5.0352	2	2.2627E-06	2970	160511_QHF_FH_JSI10i_1	144.38	102.87			0.93087	0.99202	8.3738	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79694	0.93499	NaN	1	0	Median	1.0873	1.0525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	374530000	186320000	188210000	0	0	0	213350000	109130000	104220000	161180000	77190000	83989000	0	0	0	51706	1273	48687	312377;312378	420433;420434	420434			2	
TQPTSLPK	1	Unmodified	870.48108	0.48108226	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.906	18.409	2	0.0016273	15537	160511_QHF_FH_JSI11i_1	86.953	51.073			1.0058	1.0076	9.8308	4	1	Median	1.0822	0.87973	NaN	1	0	Median	0.93181	1.1156	NaN	1	0	Median	1.0252	0.9919	NaN	1	0	Median	0.98679	1.0235	NaN	1	1	Median	2034900000	1058300000	976540000	389470000	193260000	196210000	589540000	316660000	272880000	521540000	241100000	280430000	534310000	307290000	227020000	51707	1298	48688	312379;312380;312381;312382	420435;420436;420437;420438	420435			4	
TQPTVINNLKK	2	Unmodified	1254.7296	0.7295858	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				31.559	30.154	3	0.0020677	24564	160511_QHF_FH_JSI9i_3	58.172	47.517			1.5207	1.2482	NaN	1	1	Median	1.5207	1.2482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21462000	7080700	14381000	21462000	7080700	14381000	0	0	0	0	0	0	0	0	0	51708	264	48689	312383	420439	420439			1	
TQPTYPSVK	1	Unmodified	1019.5288	0.52876073	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		25.347	25.171	2	0.0048386	21760	160511_QHF_FH_JSI9i_1	57.859	38.381			0.94177	0.92094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94177	0.92094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56270000	22013000	34257000	0	0	0	0	0	0	56270000	22013000	34257000	0	0	0	51709	264	48690	312384;312385	420440;420441	420441			2	
TQPYDVYDQVEFDVPVGSR	0	Unmodified	2213.0277	0.027677899	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.509	84.048	2	7.1218E-26	76531	160511_QHF_FH_JSI12i_1	183.23	168.97			1.0106	1.0649	11.275	4	1	Median	1.2703	1.0376	NaN	1	1	Median	1.0033	1.1653	NaN	1	0	Median	0.93619	0.89438	NaN	1	0	Median	1.0179	1.0929	NaN	1	0	Median	171420000	82138000	89283000	17909000	6873700	11035000	69708000	35317000	34391000	40020000	18949000	21071000	43784000	20999000	22785000	51710	497	48691	312386;312387;312388;312389	420442;420443;420444;420445;420446;420447;420448	420445			7	
TQQAAQANITLQEQIEAIHK	1	Unmodified	2234.1655	0.16550878	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.64	4	5	1							1	3	3	3	61.199	60.543	3	1.9797E-15	52043	160511_QHF_FH_JSI12i_2	154.55	145.39			0.93153	1.017	26.325	8	2	Median	1.4	1.1983	NaN	1	0	Median	0.63648	0.75963	35.918	2	0	Median	1.2644	1.2794	29.625	3	2	Plateau	0.93153	0.9903	13.563	2	0	Median	777450000	354310000	423140000	118800000	49853000	68944000	171980000	92517000	79463000	291840000	125730000	166110000	194840000	86218000	108620000	51711	2676	48692	312390;312391;312392;312393;312394;312395;312396;312397;312398;312399	420449;420450;420451;420452;420453;420454;420455;420456;420457;420458;420459;420460;420461	420452			11	
TQQGAALQNYNNELVK	1	Acetyl (Protein N-term)	1831.9064	0.90644055	377	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	60.606	59.963	2	1.491E-56	54453	160511_QHF_FH_JSI12i_1	190.85	161.89			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38673000	10992000	27681000	12088000	0	12088000	10992000	10992000	0	15593000	0	15593000	0	0	0	51712	377	48693	312400;312401;312402;312403;312404	420462;420463;420464;420465;420466	420463			5	
TQQGVPAQPADFQAEVESDTR	0	Unmodified	2273.056	0.056017914	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.069	59.425	2	1.3015E-09	53898	160511_QHF_FH_JSI11i_1	144.29	131.93			1.1836	1.0762	19.935	4	0	Median	1.1417	0.93039	NaN	1	0	Median	1.2583	1.4308	NaN	1	0	Median	1.227	1.1945	NaN	1	0	Median	0.94882	0.9696	NaN	1	0	Median	103120000	52146000	50971000	24329000	10542000	13787000	24535000	11208000	13327000	28386000	15653000	12733000	25867000	14743000	11124000	51713	971	48694	312405;312406;312407;312408	420467;420468;420469;420470;420471;420472;420473	420468			7	
TQQLHPVLQK	1	Unmodified	1190.6772	0.6771563	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		20.452	20.452	2;3	0.0029317	17158	160511_QHF_FH_JSI11i_3	59.931	47.884			0.84763	0.7868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84763	0.7868	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68357000	34623000	33734000	0	0	0	0	0	0	68357000	34623000	33734000	0	0	0	51714	4632	48695	312409;312410	420474;420475	420474			1	
TQQLLLATLQEAATTQENVAWRK	1	Unmodified	2612.3922	0.39221426	3149	Q6UW78	UQCC3	Ubiquinol-cytochrome-c reductase complex assembly factor 3	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				100.43	100.22	3	4.9018E-07	81206	160511_QHF_FH_JSI9i_3	73.758	66.565			1.5629	1.3234	NaN	1	1	Median	1.5629	1.3234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11392000	2627700	8764100	11392000	2627700	8764100	0	0	0	0	0	0	0	0	0	51715	3149	48696	312411	420476;420477	420477			2	
TQQQVEAEVTNIK	1	Unmodified	1486.7627	0.76273643	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.645	37.027	2	0.00010633	33057	160511_QHF_FH_JSI10i_1	91.961	74.936			0.688	0.80033	17.984	3	1	Plateau	0.96362	0.78895	NaN	1	0	Median	0.688	0.80033	NaN	1	0	Median	0.60265	0.58208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109120000	58192000	50923000	27007000	12326000	14681000	48538000	27346000	21192000	33571000	18520000	15051000	0	0	0	51716	4814	48697	312412;312413;312414	420478;420479;420480;420481	420479			4	
TQQQVEAEVTNIKK	2	Unmodified	1614.8577	0.85769944	4814	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.632	30.567	3	0.00026169	25772	160511_QHF_FH_JSI12i_3	78.505	56.292			0.5295	0.51746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5295	0.51746	NaN	1	1	Median	43755000	29526000	14229000	0	0	0	0	0	0	0	0	0	43755000	29526000	14229000	51717	4814	48698	312415	420482	420482			1	
TQQSFEK	1	Unmodified	866.4134	0.41339662	2505	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	8.5416	8.0194	2	0.008214	5959	160511_QHF_FH_JSI12i_1	86.794	9.0454			1.8305	1.6978	7.3844	2	2	Median	2.1638	1.7888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5485	1.6114	NaN	1	1	Median	353560000	142180000	211390000	158720000	62930000	95787000	0	0	0	0	0	0	194840000	79245000	115600000	51718	2505	48699	312416;312417	420483;420484	420483			2	
TQQTSPDK	1	Unmodified	903.42977	0.42977497	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										1	3	3	2.2235	2.0226	2	0.0010799	1118	160511_QHF_FH_JSI10i_1	94.302	65.79			1.1795	1.1534	60.609	6	2	Median	NaN	NaN	NaN	0	0	Median	1.3966	1.586	NaN	1	0	Median	1.311	1.2541	54.892	3	1	Median	0.64161	0.64028	71.39	2	1	Median	118010000	59743000	58270000	0	0	0	23897000	12170000	11726000	61135000	26730000	34405000	32980000	20842000	12139000	51719	4518	48700	312418;312419;312420;312421;312422;312423;312424	420485;420486;420487;420488;420489;420490;420491;420492;420493;420494	420493			10	
TQQTSPDKVDYEYSELLLYQNQVLR	1	Unmodified	3029.4982	0.49819547	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	90.35	89.9	3	1.856E-34	81474	160511_QHF_FH_JSI10i_1	172.42	163.68			1.0118	1.0576	9.174	7	1	Median	1.2689	1.1216	NaN	1	0	Median	0.84866	1.0174	5.4802	2	0	Median	1.015	1.0286	6.0828	2	1	Median	1.0839	1.149	15.248	2	0	Median	217460000	108070000	109390000	30927000	13344000	17583000	70917000	38282000	32635000	52248000	26586000	25661000	63370000	29861000	33509000	51720	4518	48701	312425;312426;312427;312428;312429;312430;312431	420495;420496;420497;420498;420499;420500;420501;420502;420503;420504;420505;420506;420507;420508;420509	420502			15	
TQQVEQDMFAHPYQYELNHFTPADAVLQK	1	Unmodified	3447.6194	0.61939001	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.754	86.622	4	0.0083239	75175	160511_QHF_FH_JSI12i_3	30.855	28.691			1.8082	1.8479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8082	1.8479	NaN	1	1	Median	69239000	17813000	51425000	0	0	0	0	0	0	0	0	0	69239000	17813000	51425000	51721	2175	48702	312432	420510	420510			1	
TQQVVAIK	1	Unmodified	885.52837	0.5283668	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	25.256	21.388	2	0.0026899	18302	160511_QHF_FH_JSI11i_1	78.192	41.098			1.0785	1.1084	31.59	7	0	Median	1.0785	0.87363	NaN	1	0	Median	0.78135	0.92163	60.671	2	0	Median	1.027	0.99776	34.012	2	0	Median	1.1267	1.2057	11.898	2	0	Median	1028200000	524520000	503720000	229430000	103580000	125850000	232370000	132160000	100220000	254630000	129300000	125330000	311800000	159480000	152320000	51722	5206	48703	312433;312434;312435;312436;312437;312438;312439	420511;420512;420513;420514;420515	420511			5	
TQQYDDLIDEFMK	1	Unmodified	1644.7341	0.73413841	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	94.797	94.479	2	1.051E-05	85790	160511_QHF_FH_JSI12i_1	124.38	89.684			1.2362	1.3204	8.079	3	0	Plateau	1.4515	1.2093	NaN	1	0	Median	1.1199	1.3204	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3646	1.421	NaN	1	0	Median	159930000	74754000	85174000	23071000	9295000	13776000	73317000	36057000	37259000	0	0	0	63540000	29402000	34138000	51723	1225	48704	312440;312441;312442	420516;420517;420518;420519;420520;420521	420517			6	
TQRPADVIFATVR	0	Unmodified	1472.81	0.80996139	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			58.426	56.886	3	4.874E-05	46628	160511_QHF_FH_JSI9i_3	76.262	60.723			0.83403	0.80755	4.4883	2	1	Median	1.0326	0.83359	NaN	1	0	Median	0.67365	0.78232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153670000	85948000	67724000	91702000	46182000	45520000	61970000	39766000	22204000	0	0	0	0	0	0	51724	1411	48705	312443;312444	420522;420523;420524	420524			3	
TQSGLQSYLLQFHGLVR	0	Unmodified	1946.0374	0.037395144	5443	Q9UNN8	PROCR	Endothelial protein C receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	84.747	76.618	3	4.9529E-33	43303	160513_QHF_FH_JSI10Kac_6	165.66	152.62			1.1483	0.97336	10.895	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81369	0.97336	NaN	1	0	Median	1.1509	1.0813	NaN	1	0	Median	1.1483	1.2103	NaN	1	0	Median	806350000	420210000	386150000	0	0	0	533070000	292860000	240210000	146050000	68832000	77217000	127240000	58517000	68720000	51725	5443	48706	312445;312446;312447	420525;420526	420526			2	
TQSILFNR	0	Unmodified	977.52943	0.52942943	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			39.735	38.234	2	0.048848	31274	160511_QHF_FH_JSI9i_3	37.53	12.68			1.0661	1.0433	4.468	2	0	Median	1.2325	1.0108	NaN	1	0	Median	0.9221	1.0767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48350000	23046000	25303000	23482000	10833000	12649000	24868000	12213000	12654000	0	0	0	0	0	0	51726	486	48707	312448;312449	420527	420527			1	
TQSKPFSIQELELR	1	Acetyl (K)	1716.9046	0.90464964	5698	Q9Y618	NCOR2	Nuclear receptor corepressor 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.373								5	1	1	1	2	2	83.657	73.366	2;3	8.6171E-114	38760	160513_QHF_FH_JSI11Kac_5	267.67	186.65			1.0246	1.0057	15.957	6	0	Median	1.226	1.0431	NaN	1	0	Median	0.80967	0.9697	NaN	1	0	Median	1.0246	1.0097	8.5571	2	0	Median	0.91916	1.0108	34.249	2	0	Median	99819000	49652000	50167000	3701100	1965700	1735300	7790000	4360800	3429200	74651000	35853000	38798000	13677000	7472100	6204900	51727	5698	48708	312450;312451;312452;312453;312454;312455	420528;420529;420530;420531;420532;420533;420534;420535	420531	3530		7	
TQSLPVTEK	1	Unmodified	1001.5393	0.53932542	4929	Q9NQW6	ANLN	Actin-binding protein anillin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	22.017	21.491	2	0.0043924	18549	160511_QHF_FH_JSI10i_1	56.916	31.179			1.2973	1.2491	11.376	4	0	Median	1.5572	1.2804	NaN	1	0	Median	0.89797	1.0704	NaN	1	0	Median	1.4633	1.4064	NaN	1	0	Median	1.1501	1.2187	NaN	1	0	Median	165070000	62377000	102700000	47034000	9912600	37122000	43908000	22376000	21532000	36523000	13606000	22917000	37609000	16482000	21126000	51728	4929	48709	312456;312457;312458;312459	420536;420537	420537			2	
TQSQLAK	1	Unmodified	774.42357	0.42356738	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			5.609	5.3711	2	0.055434	3362	160511_QHF_FH_JSI10i_1	41.84	41.84			0.8255	0.98464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8255	0.98464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187580000	109700000	77880000	0	0	0	187580000	109700000	77880000	0	0	0	0	0	0	51729	3912	48710	312460	420538	420538			1	
TQSSASLAASYAAQQHPQAAASYR	0	Unmodified	2464.1731	0.17311336	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.08		7	6						5	4	7	3	4	45.174	41.959	3;4	6.4482E-53	36781	160511_QHF_FH_JSI9i_2	210.96	185.42			0.97814	1.099	12.159	18	4	Median	1.3243	1.1399	15.97	4	0	Median	0.97191	1.1446	3.9391	7	3	Median	1.0396	1.0031	6.7341	3	0	Median	0.89564	0.9404	4.8253	4	1	Median	2762900000	1437000000	1325800000	569230000	248570000	320650000	1553800000	856240000	697590000	409990000	218610000	191370000	229830000	113610000	116220000	51730	4197	48711	312461;312462;312463;312464;312465;312466;312467;312468;312469;312470;312471;312472;312473;312474;312475;312476;312477;312478	420539;420540;420541;420542;420543;420544;420545;420546;420547;420548;420549;420550;420551;420552;420553;420554;420555;420556;420557;420558;420559;420560;420561	420548			23	
TQSSLVPALTDFVR	0	Unmodified	1532.8199	0.81985737	458	O60888	CUTA	Protein CutA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.18	5	8	3					2		5	4	6	3	91.674	90.575	2;3	3.2928E-42	80400	160511_QHF_FH_JSI11i_2	211.46	193.6			0.94896	1.009	51.575	16	3	Median	1.2301	1.0595	24.122	3	1	Median	0.82391	0.98806	9.441	4	1	Median	1.0017	0.99299	83.531	6	1	Median	0.95144	1.01	6.2496	3	0	Plateau	2767900000	1388600000	1379300000	420560000	189880000	230680000	773970000	428510000	345460000	918740000	437560000	481190000	654620000	332650000	321970000	51731	458	48712	312479;312480;312481;312482;312483;312484;312485;312486;312487;312488;312489;312490;312491;312492;312493;312494;312495;312496	420562;420563;420564;420565;420566;420567;420568;420569;420570;420571;420572;420573;420574;420575;420576;420577;420578;420579;420580;420581;420582;420583;420584;420585;420586;420587;420588;420589;420590;420591;420592;420593;420594;420595;420596	420589			35	
TQSSNMETR	0	Unmodified	1052.4557	0.45567214	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	5.3162	4.9306	2	0.0073653	2953	160511_QHF_FH_JSI12i_1	53.493	32.03			0.67474	0.80181	21.157	3	0	Plateau	1.4922	1.2205	NaN	1	0	Median	0.67474	0.80181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97863	1.0331	NaN	1	0	Median	192410000	105520000	86893000	56224000	24267000	31957000	74694000	46855000	27839000	0	0	0	61490000	34393000	27097000	51732	4141	48713	312497;312498;312499	420597;420598	420597			2	
TQSTVESLSK	1	Unmodified	1078.5506	0.55061839	1391	Q14409;P32189	GK3P;GK	Putative glycerol kinase 3;Glycerol kinase	yes	no	0	0	0	0			By MS/MS	By MS/MS	7	6	1					1						1	1	20.88	16.869	2	0.0025721	14621	160511_QHF_FH_JSI12i_1	59.067	24.815			0.76424	0.77388	37.592	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0614	1.0095	NaN	1	0	Median	0.55026	0.59324	NaN	1	0	Median	38646000	20118000	18528000	0	0	0	0	0	0	1904100	914910	989190	36742000	19203000	17539000	51733	1391	48714	312500;312501	420599;420600	420599			2	
TQSTWVDSFFR	0	Unmodified	1372.6412	0.64116473	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0		By MS/MS	By matching		2	0		2									1	1		81.94	81.297	2	0.0022187	72399	160511_QHF_FH_JSI10i_2	57.836	21.892			1.191	1.3126	25.153	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2898	1.5682	NaN	1	0	Median	1.0997	1.0988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	82545000	40479000	42066000	0	0	0	36648000	17279000	19370000	45897000	23200000	22697000	0	0	0	51734	615	48715	312502;312503	420601	420601			1	
TQTAIASEDMPNTLTEAEK	1	Unmodified	2048.9572	0.95721507	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.088	56.432	2	3.1282E-83	51116	160511_QHF_FH_JSI11i_1	252.73	220.23			0.73994	0.89023	8.8796	4	0	Linear	0.95943	0.77506	NaN	1	0	Median	0.73896	0.85557	NaN	1	0	Median	0.96357	0.94073	NaN	1	0	Median	0.88304	0.9263	NaN	1	0	Median	261780000	138630000	123150000	60843000	29826000	31017000	84413000	51937000	32476000	53828000	24279000	29548000	62692000	32584000	30107000	51735	2162	48716	312504;312505;312506;312507	420602;420603;420604;420605;420606;420607;420608;420609;420610;420611	420603			10	
TQTAISVVEEDLK	1	Unmodified	1431.7457	0.74568938	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		69.687	69.3	2	2.1548E-07	60600	160511_QHF_FH_JSI11i_2	98.902	82.677			0.80389	0.78121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80389	0.78121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42889000	21708000	21181000	0	0	0	0	0	0	42889000	21708000	21181000	0	0	0	51736	2899	48717	312508;312509	420612;420613	420613			2	
TQTFSGDFMHR	0	Unmodified	1325.5823	0.58226964	3598	Q8NBN3	TMEM87A	Transmembrane protein 87A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								2	2	2	38.156	37.618	2;3	1.1598E-07	32027	160511_QHF_FH_JSI12i_3	98.902	94.386			0.92141	0.91697	11.631	6	0	Median	NaN	NaN	NaN	0	0	Median	0.80263	0.95463	23.39	2	0	Median	0.95938	0.93017	10.424	2	0	Median	0.92141	0.91697	1.9962	2	0	Median	357310000	196590000	160730000	0	0	0	69308000	40262000	29046000	134800000	73425000	61376000	153200000	82898000	70304000	51737	3598	48718	312510;312511;312512;312513;312514;312515	420614;420615;420616;420617;420618;420619;420620;420621;420622	420621			9	
TQTIFLK	1	Unmodified	849.496	0.49600404	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	40.548	39.881	2	0.014075	35237	160511_QHF_FH_JSI10i_2	66.799	33.061			1.0008	0.93865	11.791	4	0	Linear	1.2588	1.1078	NaN	1	0	Median	0.76297	0.95507	NaN	1	0	Median	0.8946	0.9164	NaN	1	0	Median	1.1195	1.1738	NaN	1	0	Median	386910000	202180000	184730000	102990000	50855000	52133000	104280000	56994000	47290000	161610000	86193000	75413000	18031000	8135700	9895200	51738	5161	48719	312516;312517;312518;312519	420623	420623			1	
TQTPPLGQTPQLGLK	1	Unmodified	1577.8777	0.8777066	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.384	60.744	2;3	4.2028E-05	54890	160511_QHF_FH_JSI10i_1	72.523	64.848			1.0154	0.93631	8.376	8	0	Median	1.1016	0.91172	0.37424	2	0	Median	0.75401	0.89652	9.0279	2	0	Median	0.99653	0.97076	7.9957	2	0	Median	1.0154	1.0501	6.0845	2	0	Median	830090000	419540000	410550000	173470000	84498000	88973000	201800000	118870000	82931000	232790000	109150000	123640000	222030000	107030000	115000000	51739	2084	48720	312520;312521;312522;312523;312524;312525;312526;312527	420624;420625;420626;420627;420628;420629;420630;420631;420632;420633;420634;420635	420632			12	
TQTPPVEENVTQK	1	Unmodified	1469.7362	0.73618733	3096	Q6P1Q9	METTL2B	Methyltransferase-like protein 2B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	28.084	27.443	2	0.00028124	24278	160511_QHF_FH_JSI10i_1	100.55	64.61			1.0454	1.125	20.47	7	7	Median	1.4972	1.2509	27.529	2	2	Median	1.0066	1.1683	5.3299	2	2	Median	0.89163	0.86924	NaN	1	1	Median	1.1255	1.1684	28.222	2	2	Median	346540000	157160000	189370000	86110000	34752000	51358000	100130000	44593000	55534000	53198000	28315000	24883000	107100000	49502000	57600000	51740	3096	48721	312528;312529;312530;312531;312532;312533;312534	420636;420637;420638;420639;420640;420641;420642	420640			7	
TQTPPVSPAPQPTEER	0	Unmodified	1733.8584	0.85842773	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		31.939	31.189	2	0.00031302	27911	160511_QHF_FH_JSI11i_1	84.289	68.036			1.2301	1.0943	62.676	2	2	Median	2.0928	1.7045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72308	0.70252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29466000	13546000	15920000	14266000	4828200	9437600	0	0	0	15200000	8718200	6482000	0	0	0	51741	2522	48722	312535;312536;312537	420643;420644;420645	420643			3	
TQTPPVSPAPQPTEERLPSSPVYEDAASFK	1	Unmodified	3225.583	0.58298773	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	70.816	70.284	3;4	1.2634E-27	63476	160511_QHF_FH_JSI10i_1	125.12	113.73			0.99396	1.0179	15.118	8	1	Median	1.3648	1.1094	13.874	2	1	Median	1.0325	1.2226	17.651	2	0	Median	0.95707	0.92799	4.8751	2	0	Median	0.92887	0.96263	9.5922	2	0	Median	873980000	429940000	444040000	139250000	60414000	78837000	189570000	84960000	104610000	223080000	116540000	106550000	322080000	168030000	154040000	51742	2522	48723	312538;312539;312540;312541;312542;312543;312544;312545	420646;420647;420648;420649;420650;420651;420652;420653;420654;420655;420656;420657;420658;420659;420660;420661;420662	420656			17	
TQTQRPNLIGLTSGDMDVNPR	0	Unmodified	2312.1543	0.15429217	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.282	61.775	3	4.0534E-05	50804	160511_QHF_FH_JSI9i_3	57.009	53.132			1.0513	0.86404	NaN	1	0	Median	1.0513	0.86404	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17634000	9540400	8093300	17634000	9540400	8093300	0	0	0	0	0	0	0	0	0	51743	5220	48724	312546	420663;420664;420665	420665			3	
TQTSDPAMLPTMIGLLAEAGVR	0	Unmodified	2271.1603	0.16028875	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.703	3	7	4							2	2	5	5	102.52	102.45	2;3	2.3216E-85	88318	160511_QHF_FH_JSI12i_2	300.37	268.7			1.1378	1.1534	9.15	14	2	Median	1.3737	1.1347	4.2695	2	0	Median	1.0616	1.2792	13.511	2	0	Median	1.1243	1.135	8.7435	5	0	Median	1.0365	1.1442	9.8248	5	2	Median	5972900000	2766600000	3206300000	1035700000	457920000	577810000	621620000	309590000	312030000	2109500000	1023000000	1086500000	2206100000	976130000	1229900000	51744	309	48725	312547;312548;312549;312550;312551;312552;312553;312554;312555;312556;312557;312558;312559;312560	420666;420667;420668;420669;420670;420671;420672;420673;420674;420675;420676;420677;420678;420679	420669			14	
TQTVENVEHLQTR	0	Unmodified	1553.7798	0.77978347	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	26.461	25.567	3	0.00016319	22258	160511_QHF_FH_JSI10i_2	82.578	75.376			1.1311	1.1833	21.186	4	3	Median	1.5101	1.2808	NaN	1	1	Median	0.66592	0.82687	NaN	1	1	Median	1.0985	1.0931	NaN	1	1	Median	1.1646	1.3091	NaN	1	0	Median	146480000	70290000	76189000	29605000	10534000	19071000	24063000	16100000	7963200	56458000	26226000	30233000	36353000	17431000	18922000	51745	303	48726	312561;312562;312563;312564	420680;420681;420682;420683	420683			4	
TQTVTISDNANAVK	1	Unmodified	1460.7471	0.74708636	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	31.875	31.346	2	0.00011906	27853	160511_QHF_FH_JSI10i_1	103.44	82.569			0.86469	0.88349	25.453	5	3	Median	1.106	0.88349	NaN	1	0	Median	0.85196	0.99058	NaN	1	0	Median	1.1627	1.1078	42.005	2	2	Median	0.75656	0.79765	NaN	1	1	Median	186770000	85816000	100960000	40041000	19146000	20894000	49722000	27052000	22670000	54477000	21560000	32917000	42532000	18058000	24473000	51746	988	48727	312565;312566;312567;312568;312569	420684;420685;420686;420687;420688;420689	420687			6	
TQVAGGQLSFK	1	Unmodified	1134.6033	0.60332266	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	5.88		2	2				2	1		3	1	2	1	46.718	40.068	2	1.5737E-05	35066	160511_QHF_FH_JSI9i_2	101.39	77.363			1.0219	0.99045	4.4286	5	1	Median	1.1813	0.95373	4.2728	2	1	Median	0.86623	1.0183	NaN	1	0	Median	1.0117	0.99045	NaN	1	0	Median	1.0219	1.0401	NaN	1	0	Median	84527000	36476000	48051000	29490000	11172000	18318000	5972000	3156700	2815300	15457000	7510100	7946800	33608000	14637000	18971000	51747	1578	48728	312570;312571;312572;312573;312574;312575;312576	420690;420691;420692;420693;420694;420695;420696	420693			7	
TQVAGGQLSFKGK	2	Acetyl (K)	1361.7303	0.73031409	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	55.872	45.161	2	0.00136	26084	160513_QHF_FH_JSI11Kac_4	78.692	34.489			0.75487	0.78423	3.4732	3	0	Median	NaN	NaN	NaN	0	0	Median	0.65348	0.76672	NaN	1	0	Median	0.78984	0.78423	NaN	1	0	Median	0.75487	0.82082	NaN	1	0	Median	14867000	9572900	5294000	0	0	0	5142400	3652000	1490400	5277100	3230400	2046800	4447300	2690500	1756800	51748	1578	48729	312577;312578;312579	420697;420698;420699;420700;420701	420700	1592		5	
TQVAIVR	0	Unmodified	785.47594	0.4759373	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	23.819	22.54	2	0.012734	18709	160511_QHF_FH_JSI12i_2	68.915	42.806			0.38915	0.36677	161.2	2	0	Median	0.14215	0.11732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0654	1.1467	NaN	1	0	Median	76029000	46534000	29495000	32522000	28420000	4101900	0	0	0	0	0	0	43507000	18114000	25393000	51749	4831	48730	312580;312581	420702	420702			1	
TQVEASEESALNHLQNPGDAAEGR	0	Unmodified	2522.1633	0.16333653	5693	Q9Y605	MRFAP1	MORF4 family-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	52.152	51.393	3	7.1215E-52	46281	160511_QHF_FH_JSI10i_1	205.38	183.58			0.92024	1.0524	9.685	3	1	Plateau	1.0969	0.91385	NaN	1	1	Median	0.88431	1.0524	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0566	1.1001	NaN	1	0	Median	528790000	266880000	261920000	117520000	57698000	59817000	262340000	134980000	127360000	0	0	0	148930000	74197000	74737000	51750	5693	48731	312582;312583;312584	420703;420704	420703			2	
TQVELLEAPTPALK	1	Unmodified	1508.845	0.84500949	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.876	72.363	2	8.7559E-10	64369	160511_QHF_FH_JSI9i_1	147.24	120.57			1.0957	1.1461	19.434	4	1	Median	1.3621	1.1148	NaN	1	0	Median	0.99818	1.1783	NaN	1	0	Median	1.2027	1.1824	NaN	1	1	Median	0.7627	0.78807	NaN	1	0	Median	195310000	93428000	101880000	52959000	17599000	35360000	46082000	20783000	25299000	44721000	24765000	19956000	51544000	30282000	21262000	51751	1042	48732	312585;312586;312587;312588	420705;420706;420707;420708	420708			4	
TQVLQPEEK	1	Unmodified	1070.5608	0.56078914	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	2	2	22.199	20.211	2	2.7657E-06	17660	160511_QHF_FH_JSI12i_1	113.62	82.333			1.1525	1.0816	32.203	5	3	Median	1.2994	1.0816	NaN	1	1	Median	0.90169	1.0651	NaN	1	1	Median	0.81102	0.78467	50.208	2	0	Median	1.1785	1.219	NaN	1	1	Median	377260000	191960000	185300000	116600000	60988000	55610000	73528000	37114000	36414000	91734000	47208000	44526000	95402000	46650000	48752000	51752	5640	48733	312589;312590;312591;312592;312593;312594;312595;312596	420709;420710;420711;420712;420713;420714;420715;420716;420717	420712			9	
TQVPMVVMPHGGPHSSFVTAWMLFPAMLCK	1	Oxidation (M)	3371.615	0.6149788	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	3	2	95.047	86.606	4	5.1434E-40	51355	160513_QHF_FH_JSI10Kac_6	146.57	134.37			0.88343	0.93727	40.063	8	3	Median	1.7216	1.4911	NaN	1	1	Median	0.95384	1.1356	1.47	2	1	Median	0.77598	0.72582	22.727	3	1	Median	1.0726	1.1364	54.542	2	0	Median	950720000	461440000	489280000	46807000	14871000	31936000	238370000	120080000	118290000	336330000	169670000	166650000	329210000	156820000	172390000	51753	1040	48734	312597;312598;312599;312600;312601;312602;312603;312604	420718;420719;420720;420721;420722;420723;420724;420725;420726;420727;420728	420726		660;661;662;663	11	
TQVPMVVMPHGGPHSSFVTAWMLFPAMLCK	1	Unmodified	3355.6201	0.62006418	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				96.36	87.293	4	3.6744E-25	49707	160513_QHF_FH_JSI9Kac_6	151.65	129.88			1.3476	1.1662	2.7897	2	2	Median	1.3476	1.1662	2.7897	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	721550000	322720000	398840000	721550000	322720000	398840000	0	0	0	0	0	0	0	0	0	51754	1040	48734	312605;312606	420729;420730	420730			2	
TQVSAVVQR	0	Unmodified	986.55089	0.55089316	682	O95361	TRIM16	Tripartite motif-containing protein 16	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	21.326	20.577	2	0.015309	17001	160511_QHF_FH_JSI12i_2	44.349	16.175			0.74447	0.76751	39.468	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57125	0.5806	NaN	1	0	Median	0.9702	1.0146	NaN	1	0	Median	44384000	28267000	16117000	0	0	0	0	0	0	27504000	17682000	9822400	16879000	10585000	6294600	51755	682	48735	312607;312608	420731;420732	420731			2	
TQVSVTAAIPHLK	1	Unmodified	1363.7823	0.78234966	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.718	58.588	3	0.00071755	50520	160511_QHF_FH_JSI12i_3	56.286	47.282			0.84838	0.82779	11.184	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93864	0.89591	NaN	1	1	Median	0.7668	0.76485	NaN	1	0	Median	83650000	46133000	37517000	0	0	0	0	0	0	29723000	15855000	13867000	53927000	30277000	23650000	51756	5136	48736	312609;312610	420733;420734	420734			2	
TQVTVQYMQDR	0	Unmodified	1367.6503	0.65034921	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.33	4	3	2						1	2	5	2	1	39.719	38.025	2	3.0247E-18	32669	160511_QHF_FH_JSI11i_2	163.9	117.01			1.1294	1.1556	12.618	8	1	Median	1.415	1.1819	14.397	2	0	Median	1.0318	1.2443	18.852	3	1	Plateau	1.1307	1.1206	5.0269	2	0	Median	1.1365	1.218	NaN	1	0	Median	2311200000	1036300000	1275000000	451600000	200790000	250800000	819940000	395240000	424700000	631820000	268180000	363640000	407860000	172050000	235810000	51757	1370	48737	312611;312612;312613;312614;312615;312616;312617;312618;312619;312620	420735;420736;420737;420738;420739;420740;420741	420739			7	
TQVTVQYMQDR	0	Oxidation (M)	1383.6453	0.64526383	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	1	0		By MS/MS		By MS/MS	9	5.66	1					2					2		1	32.152	26.331	2	0.00084782	23112	160511_QHF_FH_JSI10i_1	70.1	39.536			0.93304	1.0194	10.355	3	1	Median	NaN	NaN	NaN	0	0	Median	0.8912	1.0289	14.625	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93304	1.0194	NaN	1	1	Median	41892000	17079000	24813000	0	0	0	36186000	14724000	21461000	0	0	0	5706800	2355100	3351700	51758	1370	48737	312621;312622;312623	420742;420743;420744	420742		1004	3	
TQYEELK	1	Unmodified	909.44436	0.4443624	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7.5	6.5	1						1			1		1		21.706	17.289	2	0.0069972	14588	160511_QHF_FH_JSI9i_1	77.318	42.425			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51759	1016	48738	312624;312625	420745;420746	420746			2	
TQYIFNNMVLK	1	Unmodified	1369.7064	0.70640752	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		73.909	73.278	2	0.0077075	64074	160511_QHF_FH_JSI11i_2	51.528	34.092			0.80132	0.80837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80132	0.80837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27249000	17665000	9583400	0	0	0	0	0	0	27249000	17665000	9583400	0	0	0	51760	2755	48739	312626;312627	420747;420748	420748			2	
TQYLQSYGPEHLLTFSNLR	0	Unmodified	2266.1382	0.1382314	4666	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		85.719	85.719	3	0.00013419	76490	160511_QHF_FH_JSI11i_3	54.834	45.085			1.2872	1.1842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2872	1.1842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20715000	8876100	11839000	0	0	0	0	0	0	20715000	8876100	11839000	0	0	0	51761	4666	48740	312628	420749	420749			1	
TQYNQVPSEDFER	0	Unmodified	1611.7165	0.71651452	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	41.557	41.003	2	9.0151E-06	37131	160511_QHF_FH_JSI12i_1	119.76	103.51			0.78812	0.76803	18.833	6	5	Median	1.2536	1.0328	NaN	1	0	Median	0.61772	0.73428	6.2817	2	2	Median	0.78812	0.73448	6.3924	2	2	Median	1.0021	1.064	NaN	1	1	Median	351220000	202360000	148850000	38381000	17975000	20405000	134760000	86147000	48613000	138750000	75128000	63623000	39323000	23111000	16211000	51762	2080	48741	312629;312630;312631;312632;312633;312634	420750;420751;420752;420753;420754;420755;420756	420753			7	
TQYSSAMLESLLPGIR	0	Unmodified	1764.908	0.90802046	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	100.72	100.63	2;3	8.5221E-31	86517	160511_QHF_FH_JSI12i_2	196.11	158.55			1.0518	1.0056	21.521	11	1	Median	1.2585	1.0711	16.173	2	0	Median	0.79	0.97318	4.6367	2	0	Median	1.0518	1.0428	16.794	3	1	Median	0.95703	1.0211	34.665	4	0	Median	877230000	456180000	421050000	108060000	51460000	56597000	152720000	90925000	61795000	284450000	146400000	138050000	332000000	167390000	164610000	51763	1862	48742	312635;312636;312637;312638;312639;312640;312641;312642;312643;312644;312645	420757;420758;420759;420760;420761;420762;420763;420764;420765;420766;420767	420759			11	
TRAEAEAAAVHGAR	0	Unmodified	1408.7171	0.71712364	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				9.6695	9.0263	3	0.00058388	6694	160511_QHF_FH_JSI9i_3	62.378	51.768			1.0134	0.80797	5.2207	2	2	Median	1.0134	0.80797	5.2207	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98607000	49875000	48732000	98607000	49875000	48732000	0	0	0	0	0	0	0	0	0	51764	2956	48743	312646;312647	420768;420769	420769			2	
TRAGGVGGLR	0	Unmodified	942.53591	0.5359118	547	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			5.8201	5.3239	3	0.061163	3415	160511_QHF_FH_JSI10i_3	29.743	0.59447			0.057211	0.064072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.057211	0.064072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103540000	96250000	7292300	0	0	0	103540000	96250000	7292300	0	0	0	0	0	0	51765	547	48744	312648	420770	420770			1	
TRDDWLVSWVQSYCR	0	Unmodified	1969.9105	0.91048007	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	86.093	78.538	3	0.00022529	44521	160513_QHF_FH_JSI10Kac_6	84.41	80.018			1.1179	1.2507	21.095	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89859	1.0774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3909	1.4519	NaN	1	1	Median	188690000	90695000	97991000	0	0	0	153810000	78608000	75197000	0	0	0	34880000	12087000	22793000	51766	2094	48745	312649;312650	420771;420772	420772			2	
TRDELDQFLDK	1	Unmodified	1378.6729	0.67285879	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	55.51	55.268	3	0.010824	48950	160511_QHF_FH_JSI11i_3	41.339	30.729			0.72842	0.73555	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72842	0.73555	NaN	1	1	Median	41854000	25605000	16249000	0	0	0	0	0	0	0	0	0	41854000	25605000	16249000	51767	2496	48746	312651;312652;312653	420773;420774;420775	420773			3	
TRDENIK	1	Unmodified	874.45084	0.45084476	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	1			By matching	By MS/MS	15	0								2				1	1	4.8858	-4.5706	3	0.033647	1366	160513_QHF_FH_JSI12Kac_5	40.268	20.482			1.0486	1.1015	3.5452	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0888	1.0742	NaN	1	0	Median	1.01	1.1294	NaN	1	0	Median	22028000	9445600	12582000	0	0	0	0	0	0	15085000	5848300	9237200	6942300	3597300	3345000	51768	3173	48747	312654;312655	420776	420776			1	
TRDEYLSLVAR	0	Unmodified	1321.699	0.69901396	4220	Q96RN5	MED15	Mediator of RNA polymerase II transcription subunit 15	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			47.88	46.314	3	0.0095152	38667	160511_QHF_FH_JSI10i_3	41.383	33.658			0.81871	0.90872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81871	0.90872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20746000	10405000	10341000	0	0	0	20746000	10405000	10341000	0	0	0	0	0	0	51769	4220	48748	312656	420777	420777			1	
TRDFKPGDLIFAK	2	Unmodified	1506.8195	0.81946344	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		57.281	57.281	4	0.023171	50815	160511_QHF_FH_JSI11i_3	39.219	27.053			1.3308	1.266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3308	1.266	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25171000	15916000	9255000	0	0	0	0	0	0	25171000	15916000	9255000	0	0	0	51770	532	48749	312657	420778	420778			1	
TRDYLIK	1	Unmodified	907.51272	0.51271674	1685;191	P49792;O14715;Q99666	RANBP2;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			19.774	18.609	3	0.010083	14925	160511_QHF_FH_JSI9i_3	55.37	13.941			0.77749	0.7381	4.9979	2	0	Median	0.95899	0.76465	NaN	1	0	Median	0.63035	0.71247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292490000	133850000	158640000	148250000	62079000	86169000	144250000	71773000	72473000	0	0	0	0	0	0	51771	1685;191	48750	312658;312659	420779;420780	420780			2	
TREAQQALGSAAADATEAK	1	Unmodified	1887.9286	0.92863256	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			33.376	31.976	3	0.0010206	26706	160511_QHF_FH_JSI10i_3	53.278	34.445			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51772	983	48751	312660	420781	420781			1	
TREEIQEVR	0	Unmodified	1158.5993	0.59929991	903;1328	P08559;P29803	PDHA1;PDHA2	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.13		5	2					4		2	3	4	2	13.886	9.9503	2;3	1.1656E-05	9071	160511_QHF_FH_JSI10i_2	93.096	60.842			0.85912	0.95997	16.318	10	1	Median	1.3648	1.1574	5.784	2	1	Median	0.83629	1.0445	8.3743	3	0	Plateau	0.93952	0.92239	22.35	3	0	Median	0.82165	0.93596	1.5683	2	0	Median	801980000	387750000	414230000	184680000	69072000	115610000	321660000	164680000	156980000	218160000	107640000	110520000	77474000	46357000	31117000	51773	903;1328	48752	312661;312662;312663;312664;312665;312666;312667;312668;312669;312670;312671	420782;420783;420784;420785;420786;420787;420788;420789;420790;420791;420792;420793;420794	420790			13	
TREGNDLYHEMIESGVINLK	1	Unmodified	2317.1372	0.13724512	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.52	0.5		15	16							8	18	3	2	82.117	81.331	3;4	7.2669E-19	71032	160511_QHF_FH_JSI11i_3	162.33	154.14			0.96121	1.0573	33.807	30	8	Median	1.2575	1.0714	40.74	7	1	Median	0.90579	1.0432	36.547	18	6	Median	1.2365	1.1995	8.3377	3	1	Plateau	0.96975	0.9802	12.059	2	0	Median	2367400000	1085000000	1282400000	266830000	124960000	141870000	771790000	370210000	401580000	1125600000	477110000	648470000	203230000	112710000	90525000	51774	851	48753	312672;312673;312674;312675;312676;312677;312678;312679;312680;312681;312682;312683;312684;312685;312686;312687;312688;312689;312690;312691;312692;312693;312694;312695;312696;312697;312698;312699;312700;312701;312702	420795;420796;420797;420798;420799;420800;420801;420802;420803;420804;420805;420806;420807;420808;420809;420810;420811;420812;420813;420814;420815;420816;420817;420818;420819;420820;420821;420822;420823;420824;420825;420826;420827;420828;420829;420830;420831;420832;420833;420834;420835;420836	420797			40	
TREGNDLYHEMIESGVINLK	1	Oxidation (M)	2333.1322	0.13215975	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	1			By MS/MS		3	0			1									1		57.266	57.266	4	0.027983	50813	160511_QHF_FH_JSI11i_3	30.969	22.027			1.5281	1.4289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5281	1.4289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49986000	16849000	33137000	0	0	0	0	0	0	49986000	16849000	33137000	0	0	0	51775	851	48753	312703	420837	420837			1	
TRELIEQTK	1	Unmodified	1116.6139	0.61388734	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.67	0.471		1	2							1		2		12.46	12.238	2;3	0.00073312	9722	160511_QHF_FH_JSI11i_3	93.111	55.919			0.65717	0.62498	61.459	3	0	Plateau	2.2438	1.9045	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69656	0.65956	7.6154	2	0	Median	NaN	NaN	NaN	0	0	Median	425890000	237170000	188730000	51481000	21054000	30427000	0	0	0	374410000	216110000	158300000	0	0	0	51776	1787	48754	312704;312705;312706	420838;420839;420840	420839			3	
TRELQSMADQEQVSPAAIK	1	Unmodified	2101.0474	0.047367483	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	3	1		47.331	46.422	3	1.5754E-10	40873	160511_QHF_FH_JSI10i_2	121.26	105.84			1.0744	1.1398	30.176	5	4	Median	1.3945	1.1699	NaN	1	1	Median	0.90889	1.1398	38.55	3	3	Median	1.0744	0.99564	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	476240000	241640000	234600000	69746000	31727000	38018000	291400000	144160000	147240000	115090000	65753000	49341000	0	0	0	51777	1394	48755	312707;312708;312709;312710;312711	420841;420842;420843;420844;420845;420846;420847	420847			7	
TREVLIETAK	1	Unmodified	1158.6608	0.66083754	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.5	6.02		3	4					1	2	4	3	3		25.964	22.612	2;3	9.7207E-05	18496	160511_QHF_FH_JSI10i_3	80.979	71.292			1.0975	1.0646	27.395	10	1	Median	1.4651	1.2532	27.735	4	1	Median	0.85532	0.98966	13.069	3	0	Median	1.1278	1.064	34.944	3	0	Median	NaN	NaN	NaN	0	0	Median	888610000	440570000	448040000	197160000	81007000	116150000	388730000	211200000	177530000	302730000	148360000	154360000	0	0	0	51778	2354	48756	312712;312713;312714;312715;312716;312717;312718;312719;312720;312721	420848;420849;420850;420851;420852;420853;420854;420855;420856;420857;420858;420859;420860	420850			13	
TRGAEDDLNTVAAGTMTGMLYK	1	Unmodified	2314.0933	0.093331398	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	76.188	75.576	3	2.762E-09	67283	160511_QHF_FH_JSI11i_3	99.11	90.291			0.9202	1.0275	11.785	6	0	Median	1.2529	1.0663	NaN	1	0	Median	0.85446	1.0341	NaN	1	0	Median	1.0659	1.051	4.1127	2	0	Median	0.7949	0.84207	4.5254	2	0	Median	787250000	393650000	393600000	82115000	39521000	42593000	120830000	60183000	60646000	364500000	179560000	184930000	219810000	114380000	105430000	51779	219	48757	312722;312723;312724;312725;312726;312727	420861;420862;420863;420864;420865;420866;420867;420868;420869;420870;420871;420872;420873	420861			13	
TRGDGPFLDSLAK	1	Unmodified	1375.7096	0.70957864	3288	Q7Z6K5	ARPIN	Arpin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		48.305	47.246	3	0.00045068	38690	160511_QHF_FH_JSI9i_3	65.805	47.392			0.94747	0.8871	11.631	3	0	Plateau	1.2011	0.97697	NaN	1	0	Median	0.94747	1.0862	NaN	1	0	Median	0.9106	0.861	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	222360000	108120000	114230000	77294000	33584000	43711000	60766000	32170000	28595000	84298000	42371000	41927000	0	0	0	51780	3288	48758	312728;312729;312730	420874;420875;420876;420877;420878	420877			5	
TRGLEEIPVFDISEK	1	Unmodified	1731.9043	0.90431529	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		76.696	76.696	3	0.029868	68464	160511_QHF_FH_JSI11i_3	37.583	25.298			0.54313	0.508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54313	0.508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45292000	26511000	18781000	0	0	0	0	0	0	45292000	26511000	18781000	0	0	0	51781	2977	48759	312731	420879	420879			1	
TRIEGLLAAFPK	1	Unmodified	1314.766	0.76597131	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	74.475	74.016	3	4.1985E-05	65603	160511_QHF_FH_JSI11i_3	89.959	82.048			0.89838	0.8748	11.438	4	2	Median	1.0109	0.87445	NaN	1	1	Median	0.87275	1.0758	NaN	1	1	Median	0.92477	0.87515	NaN	1	0	Median	0.80251	0.83158	NaN	1	0	Median	330550000	157640000	172910000	13902000	7169000	6732700	22440000	9410500	13030000	255130000	120210000	134920000	39080000	20850000	18230000	51782	1620	48760	312732;312733;312734;312735	420880;420881;420882;420883;420884	420880			5	
TRLDNGVTGFIPTK	1	Unmodified	1517.8202	0.82019173	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		57.908	57.14	3	0.00023895	50715	160511_QHF_FH_JSI11i_3	59.261	54.882			1.2557	1.3026	4.0077	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1239	1.2662	NaN	1	0	Median	1.403	1.34	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121960000	57592000	64370000	0	0	0	40544000	18705000	21839000	81418000	38886000	42531000	0	0	0	51783	3212	48761	312736;312737	420885;420886	420885			2	
TRLEILEK	1	Unmodified	1000.5917	0.59169534	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		38.109	36.995	3	0.0011296	30181	160511_QHF_FH_JSI9i_3	72.643	8.6028			0.86234	0.87919	20.432	4	3	Median	0.88325	0.71731	28.129	2	1	Median	0.77269	0.89473	NaN	1	1	Median	0.96239	0.88324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	201660000	92552000	109110000	115240000	48647000	66597000	45536000	24345000	21191000	40880000	19561000	21319000	0	0	0	51784	3494	48762	312738;312739;312740;312741	420887;420888;420889;420890	420889			4	
TRLELEENQMK	1	Unmodified	1389.6922	0.69221402	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.2	5.42		2	2						1	1	1	3		34.085	31.773	3	4.2168E-05	27429	160511_QHF_FH_JSI11i_3	72.34	60.072			0.93268	0.93588	42.472	5	3	Median	0.63868	0.53809	NaN	1	1	Median	0.50982	0.63235	NaN	1	1	Median	1.0915	1.0007	28.882	3	1	Median	NaN	NaN	NaN	0	0	Median	305770000	150650000	155120000	67378000	33573000	33805000	102190000	60577000	41609000	136210000	56501000	79707000	0	0	0	51785	5279	48763	312742;312743;312744;312745;312746	420891;420892;420893;420894;420895	420891			5	
TRLENLEQYSR	0	Unmodified	1407.7106	0.71064128	2714	Q15818	NPTX1	Neuronal pentraxin-1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				35.821	34.364	3	0.00023805	27977	160511_QHF_FH_JSI9i_3	59.57	54.416			1.1903	0.9662	NaN	1	0	Median	1.1903	0.9662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43344000	18521000	24823000	43344000	18521000	24823000	0	0	0	0	0	0	0	0	0	51786	2714	48764	312747	420896	420896			1	
TRLEQEIATYR	0	Unmodified	1378.7205	0.72047768	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__A2A4G1;CON__P08730-1;CON__Q61782;P13646;CON__Q3ZAW8;CON__Q9Z2K1;CON__ENSEMBL:ENSP00000377550;CON__P13646-1;CON__Q9D312;CON__P35900;P35900	KRT17;KRT14;KRT15;KRT13;KRT20	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 20	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			39.133	37.642	2;3	5.7994E-06	31394	160511_QHF_FH_JSI10i_3	89.189	69.547		+	0.77965	0.82147	7.4756	4	0	Median	0.9376	0.77021	11.211	2	0	Median	0.69003	0.82147	0.66039	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239110000	137550000	101560000	106890000	57406000	49487000	132220000	80143000	52075000	0	0	0	0	0	0	51787	65	48765	312748;312749;312750;312751	420897;420898	420897			2	
TRNEELAQTWK	1	Unmodified	1374.6892	0.68917755	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			25.512	24.609	3	0.017812	21383	160511_QHF_FH_JSI10i_2	36.417	22.159			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51788	3686	48766	312752	420899	420899			1	
TRNEMTAEEK	1	Unmodified	1207.5503	0.55030081	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.56		6	5					4		3	5	4	3	6.5174	3.764	2;3	1.4309E-05	3746	160511_QHF_FH_JSI11i_3	85.845	67.1			0.73905	0.74496	30.974	15	0	Linear	1.1341	0.96521	17.716	3	0	Plateau	0.77293	1.2185	22.786	5	0	Linear	1.0973	1.026	28.269	4	0	Median	0.94469	0.97711	62.622	3	0	Plateau	1109400000	600460000	508910000	255120000	113750000	141370000	401130000	247770000	153360000	405160000	216560000	188610000	47954000	22375000	25579000	51789	5658	48767	312753;312754;312755;312756;312757;312758;312759;312760;312761;312762;312763;312764;312765;312766;312767	420900;420901;420902;420903;420904;420905;420906;420907;420908;420909;420910;420911;420912;420913;420914;420915;420916;420917;420918	420903			19	
TRPSSDQLK	1	Unmodified	1030.5407	0.5407224	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			9.0031	8.4203	3	0.0035895	6287	160511_QHF_FH_JSI10i_3	51.445	9.3363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51790	3494	48768	312768	420919	420919			1	
TRQEPTSESSMEDSPTTER	0	Unmodified	2166.9335	0.93351952	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			17.735	16.878	3	5.2604E-09	14189	160511_QHF_FH_JSI9i_2	111.66	106.13			1.4392	1.2295	NaN	1	1	Median	1.4392	1.2295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26953000	6351300	20602000	26953000	6351300	20602000	0	0	0	0	0	0	0	0	0	51791	232	48769	312769;312770	420920;420921	420920			2	
TRQGVEDAFYTLVR	0	Unmodified	1653.8475	0.84746911	785	P01111	NRAS	GTPase NRas	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			68.086	66.601	3	0.00015437	54651	160511_QHF_FH_JSI9i_3	68.283	61.302			1.0719	1.0449	4.024	2	1	Median	1.3016	1.075	NaN	1	0	Median	0.8828	1.0155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79511000	36441000	43070000	41024000	17135000	23889000	38487000	19306000	19181000	0	0	0	0	0	0	51792	785	48770	312771;312772	420922;420923;420924	420923			3	
TRSDIVSR	0	Unmodified	932.50394	0.50394297	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.25	0.433		3	1							2	1	1		7.3984	6.9876	2;3	0.021367	4859	160511_QHF_FH_JSI9i_2	74.92	38.525			1.0948	0.96576	12.506	4	1	Median	1.1639	0.96576	6.3193	2	1	Median	0.67771	0.83093	NaN	1	0	Median	1.1056	1.1138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	314840000	156240000	158600000	234050000	109620000	124430000	62093000	36114000	25979000	18699000	10509000	8189900	0	0	0	51793	2628	48771	312773;312774;312775;312776	420925;420926	420926			2	
TRTEELIVQTK	1	Unmodified	1316.73	0.72997974	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	26.197	26.181	3	0.00024495	21812	160511_QHF_FH_JSI12i_3	61.375	35.658			1.2743	1.2369	21.794	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.134	1.0602	NaN	1	0	Median	1.4319	1.443	NaN	1	0	Median	179140000	86328000	92809000	0	0	0	0	0	0	96587000	48008000	48579000	82549000	38319000	44230000	51794	4551	48772	312777;312778	420927;420928	420928			2	
TRTELFDLK	1	Unmodified	1121.6081	0.60807369	1489;2481	P39880;Q13948	CUX1	Homeobox protein cut-like 1;Protein CASP	no	no	0	0	0	1		By MS/MS			3	0			1								1			46.41	44.848	3	0.015084	37432	160511_QHF_FH_JSI10i_3	45.077	23.614			4.4761	5.4276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.4761	5.4276	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83379000	17876000	65503000	0	0	0	83379000	17876000	65503000	0	0	0	0	0	0	51795	1489;2481	48773	312779	420929	420929			1	
TRTFNTSTGGLLLPSDTK	1	Unmodified	1907.9953	0.99525556	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			56.81	55.257	3	6.2917E-06	46212	160511_QHF_FH_JSI10i_3	95.205	84.571			0.765	0.85911	10.989	3	2	Plateau	1.2151	0.98331	10.952	2	2	Median	0.7513	0.85911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	145680000	79923000	65761000	98030000	53270000	44760000	47654000	26653000	21001000	0	0	0	0	0	0	51796	1023	48774	312780;312781;312782	420930;420931;420932;420933	420930			4	
TRTWESVK	1	Unmodified	1005.5243	0.52434406	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				15.238	14.247	3	0.004729	11165	160511_QHF_FH_JSI9i_3	54.416	38.214			1.688	1.389	NaN	1	0	Median	1.688	1.389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118600000	47860000	70740000	118600000	47860000	70740000	0	0	0	0	0	0	0	0	0	51797	5370	48775	312783	420934;420935	420934			2	
TSAALSTVGSAISR	0	Unmodified	1319.7045	0.70449327	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.04	4	4	4				4	3		4	5	6	4	51.164	46.671	2;3	1.0057E-51	40276	160511_QHF_FH_JSI11i_2	212.2	178.75			0.94468	0.87679	16.331	19	6	Median	1.0483	0.86645	14.407	4	1	Median	0.70195	0.83801	13.324	5	1	Median	0.94558	0.93154	14.115	6	2	Median	0.78809	0.84203	26.813	4	2	Median	2368100000	1258500000	1109600000	487650000	240990000	246660000	563600000	345620000	217980000	773480000	399770000	373700000	543420000	272170000	271250000	51798	329	48776	312784;312785;312786;312787;312788;312789;312790;312791;312792;312793;312794;312795;312796;312797;312798;312799;312800;312801;312802	420936;420937;420938;420939;420940;420941;420942;420943;420944;420945;420946;420947;420948;420949;420950;420951;420952;420953;420954;420955;420956;420957;420958;420959;420960;420961;420962;420963;420964;420965	420956			29	
TSACFEPSLDYMVTK	1	Unmodified	1747.7797	0.7797084	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.196	73.698	2	3.0934E-15	67061	160511_QHF_FH_JSI12i_1	200.82	183.01			1.126	1.1556	16.711	4	0	Median	1.3836	1.1485	NaN	1	0	Median	0.97117	1.1627	NaN	1	0	Median	0.93426	0.9166	NaN	1	0	Median	1.3054	1.3773	NaN	1	0	Median	608290000	250170000	358120000	87973000	36125000	51848000	128980000	63061000	65918000	173510000	80643000	92870000	217820000	70338000	147480000	51799	1372	48777	312803;312804;312805;312806	420966;420967;420968;420969;420970;420971;420972;420973;420974	420969			9	
TSACFEPSLDYMVTK	1	Oxidation (M)	1763.7746	0.77462302	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	63.32	62.674	2	0.001527	57068	160511_QHF_FH_JSI12i_1	65.234	46.609			1.1248	1.1884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1248	1.1884	NaN	1	0	Median	21887000	9874800	12012000	0	0	0	0	0	0	0	0	0	21887000	9874800	12012000	51800	1372	48777	312807	420975	420975		1011	1	
TSACGLFSVCYPR	0	Unmodified	1516.6803	0.68026913	1345;1346	P30153;P30154	PPP2R1A;PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	3	2	66.919	66.327	2	8.2871E-05	59046	160511_QHF_FH_JSI11i_3	113.47	79.094			1.0375	1.0768	27.167	8	5	Median	1.3088	1.1426	NaN	1	1	Median	0.85342	1.0385	16.083	2	2	Median	0.84292	0.87923	9.8773	3	2	Plateau	1.5741	1.6733	7.4505	2	0	Median	284270000	148420000	135850000	30326000	12882000	17445000	74951000	43801000	31150000	112510000	61123000	51382000	66485000	30615000	35870000	51801	1345;1346	48778	312808;312809;312810;312811;312812;312813;312814;312815	420976;420977;420978;420979;420980;420981;420982;420983;420984;420985;420986	420977			11	
TSAGTTDPEEATR	0	Unmodified	1334.595	0.5950024	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.195	11.792	2	7.5913E-31	9560	160511_QHF_FH_JSI10i_1	192.3	186.82			1.1852	1.2157	1.555	4	0	Median	1.5019	1.2171	NaN	1	0	Median	1.0491	1.2431	NaN	1	0	Median	1.2314	1.197	NaN	1	0	Median	1.1407	1.2144	NaN	1	0	Median	979650000	453640000	526010000	228970000	100310000	128670000	229620000	117080000	112530000	267550000	119950000	147600000	253510000	116300000	137210000	51802	2521	48779	312816;312817;312818;312819	420987;420988;420989;420990;420991;420992;420993	420992			7	
TSAHYEENK	1	Unmodified	1077.4727	0.47270242	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	5.1912	4.8019	2;3	3.9541E-06	2885	160511_QHF_FH_JSI10i_2	121.05	91.71			0.99572	0.95121	8.9051	7	1	Median	1.024	0.88944	1.5235	2	1	Median	0.77011	0.93076	NaN	1	0	Median	1.0866	1.0895	5.3598	2	0	Median	0.88033	0.97045	2.833	2	0	Median	486180000	255290000	230890000	118290000	58564000	59730000	42249000	23108000	19141000	167350000	79825000	87529000	158290000	93793000	64493000	51803	3229;4066	48780	312820;312821;312822;312823;312824;312825;312826	420994;420995;420996;420997	420997			3	
TSAIPQYHLAMSDGSIR	0	Unmodified	1845.9043	0.90433206	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		57.693	57.693	3	0.00066402	51199	160511_QHF_FH_JSI11i_3	44.089	39.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51804	3004	48781	312827	420998	420998			1	
TSAKEEDAFHFVSYVPVNGR	1	Acetyl (K)	2294.0968	0.096760517	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	1	1	2	2	80.473	71.635	3	1.04E-25	40252	160513_QHF_FH_JSI10Kac_6	153.17	138.24			0.83135	0.84473	40.659	6	0	Median	1.9347	1.6534	NaN	1	0	Median	1.1744	1.3953	NaN	1	0	Median	0.78793	0.76929	12.551	2	0	Median	0.64398	0.69724	27.816	2	0	Median	615910000	317480000	298430000	100880000	38899000	61979000	215800000	107230000	108570000	107960000	58016000	49940000	191270000	113340000	77937000	51805	5663	48782	312828;312829;312830;312831;312832;312833	420999;421000;421001;421002;421003;421004	421004	3522		6	
TSALENYINR	0	Acetyl (Protein N-term)	1221.599	0.59896556	725	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.255	70.723	2	7.5864E-07	64251	160511_QHF_FH_JSI10i_1	166.16	153.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51806	725	48783	312834;312835;312836;312837	421005;421006;421007;421008;421009	421008			5	
TSALSDETK	1	Unmodified	950.45566	0.45565537	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.29	8.9577	2	2.1708E-07	6111	160513_QHF_FH_JSI11Kac_3	141.48	87.323			1.0005	0.99018	8.9376	7	0	Median	1.1557	0.91184	NaN	1	0	Median	0.82791	0.96948	4.127	2	0	Median	0.98244	0.95557	5.0325	2	0	Median	1.0446	1.1279	1.2125	2	0	Median	4586800000	2418900000	2168000000	1074100000	498610000	575530000	1323700000	799320000	524400000	1046500000	586750000	459790000	1142400000	534180000	608250000	51807	2094	48784	312838;312839;312840;312841;312842;312843;312844	421010;421011;421012;421013;421014;421015;421016;421017;421018	421012			7	
TSALTQGLER	0	Acetyl (Protein N-term)	1116.5775	0.57750184	2293	Q0VGL1	LAMTOR4	Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.21	3			2	2					1	2	1	3	59.986	55.762	2	3.2999E-05	50677	160511_QHF_FH_JSI12i_1	99.013	68.759			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51808	2293	48785	312845;312846;312847;312848;312849;312850;312851	421019;421020;421021;421022;421023;421024;421025	421020			7	
TSAPITCELLNK	1	Unmodified	1345.6912	0.69115139	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		4.5	5.5	2	1					1				1	3		60.348	57.264	2	9.0226E-06	51819	160511_QHF_FH_JSI11i_1	119.53	81.717			1.0176	1.0563	19.293	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0532	1.2447	NaN	1	0	Median	0.98315	0.95563	17.982	3	1	Median	NaN	NaN	NaN	0	0	Median	205990000	121200000	84788000	0	0	0	68177000	38580000	29597000	137810000	82620000	55192000	0	0	0	51809	2517	48786	312852;312853;312854;312855	421026;421027;421028;421029;421030;421031	421027			6	
TSAQAASSQSANK	1	Unmodified	1249.5899	0.58985744	3842	Q92545	TMEM131	Transmembrane protein 131	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.5147	5.1687	2	8.3756E-07	3174	160511_QHF_FH_JSI12i_1	89.301	68.399			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51810	3842	48787	312856	421032	421032			1	
TSAQVSLAAGHK	1	Unmodified	1168.62	0.62003536	149	O00534	VWA5A	von Willebrand factor A domain-containing protein 5A	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	15.946	15.98	2;3	0.0010924	12718	160511_QHF_FH_JSI12i_3	54.343	46.513			1.0357	1.0131	3.2354	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0915	1.0366	NaN	1	0	Median	0.98275	0.9902	NaN	1	0	Median	107780000	58375000	49410000	0	0	0	0	0	0	42804000	19292000	23511000	64981000	39083000	25898000	51811	149	48788	312857;312858;312859	421033;421034	421033			2	
TSAQVVLDGLVDK	1	Unmodified	1343.7296	0.72964538	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.43	0.495	4	3								1	2		4	73.623	72.798	2	0.0073036	65937	160511_QHF_FH_JSI10i_1	51.612	41.38			1.0391	0.88039	42.321	5	3	Median	1.0391	0.88039	NaN	1	1	Median	0.72326	0.82466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8989	2.0587	55.423	3	2	Plateau	77501000	38924000	38577000	9569700	4193300	5376400	25649000	14203000	11446000	0	0	0	42282000	20527000	21755000	51812	2485	48789	312860;312861;312862;312863;312864;312865;312866	421035;421036;421037;421038;421039;421040;421041;421042	421040			7	
TSASDVTNIYPGDAGK	1	Unmodified	1594.7475	0.74748029	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.115	46.704	2	1.7128E-07	42229	160511_QHF_FH_JSI11i_1	132.06	116.17			0.84562	0.81527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84562	0.81527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19677000	13693000	5984100	0	0	0	0	0	0	19677000	13693000	5984100	0	0	0	51813	2612	48790	312867	421043	421043			1	
TSASIILR	0	Unmodified	859.51272	0.51271674	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.18		4	3					1		2	1	3	2	37.683	35.71	2	0.00076867	20142	160513_QHF_FH_JSI11Kac_5	101.41	49.625			1.0099	1.0192	13.901	8	2	Median	1.1717	0.96286	17.622	2	1	Median	0.82455	1.0118	NaN	1	0	Median	0.97085	0.9386	17.97	3	1	Plateau	0.88562	0.93851	12.682	2	0	Median	4122200000	2032700000	2089600000	788370000	383330000	405040000	568810000	312830000	255970000	1525700000	721600000	804100000	1239300000	614900000	624440000	51814	1132	48791	312868;312869;312870;312871;312872;312873;312874;312875	421044;421045;421046;421047;421048;421049;421050;421051	421049			8	
TSASLEMNQGVSEER	0	Unmodified	1636.7363	0.73626368	4707	Q9H410	DSN1	Kinetochore-associated protein DSN1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			33.493	33.153	2	0.000295	29633	160511_QHF_FH_JSI10i_1	99.539	75.815			0.51142	0.58023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51142	0.58023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23664000	17356000	6308200	0	0	0	23664000	17356000	6308200	0	0	0	0	0	0	51815	4707	48792	312876	421052	421052			1	
TSASSASASNSSR	0	Unmodified	1211.5378	0.53782187	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	4.9015	1.6051	2	1.5531E-16	2406	160511_QHF_FH_JSI12i_1	205.52	168.83			0.88272	0.90209	16.82	7	1	Median	1.0354	0.86461	NaN	1	0	Median	0.73053	0.86659	11.199	2	0	Median	0.84932	0.82358	12.877	2	0	Median	1.0156	1.0872	22.367	2	1	Median	471020000	239730000	231290000	96508000	50624000	45885000	127540000	65796000	61749000	105370000	53911000	51463000	141590000	69396000	72197000	51816	3341	48793	312877;312878;312879;312880;312881;312882;312883	421053;421054;421055;421056;421057;421058;421059;421060;421061	421053			9	
TSATWLALSR	0	Unmodified	1104.5928	0.59275797	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.37		4	4					4	2	5	3	3	3	62.512	57.645	2	7.3079E-14	30594	160513_QHF_FH_JSI9Kac_6	153.24	135.26			0.84671	0.81086	46.416	14	5	Median	1.0931	0.873	28.004	5	1	Median	0.84557	0.99248	21.938	3	0	Median	0.67145	0.67547	29.377	3	2	Median	0.49357	0.4955	99.53	3	2	Plateau	1422200000	790800000	631410000	508050000	263690000	244370000	352540000	204920000	147620000	416470000	227070000	189400000	145150000	95124000	50029000	51817	821	48794	312884;312885;312886;312887;312888;312889;312890;312891;312892;312893;312894;312895;312896;312897	421062;421063;421064;421065;421066;421067;421068;421069;421070;421071;421072;421073;421074	421073			12	
TSAVKEELK	2	Acetyl (K)	1045.5655	0.56554017	5396	Q9ULD4	BRPF3	Bromodomain and PHD finger-containing protein 3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	1.02					2	4	2	2		1	3	2	4	34.712	24.771	2	0.0018155	16245	160513_QHF_FH_JSI11Kac_3	86.898	44.299			0.87329	0.90631	9.5104	10	0	Median	1.0222	0.82962	NaN	1	0	Median	0.7648	0.92895	4.3286	3	0	Plateau	0.94742	0.94009	7.5798	2	0	Median	0.89981	0.96786	12.092	4	0	Median	391410000	199140000	192270000	137510000	67725000	69781000	81126000	44438000	36688000	49135000	24703000	24432000	123640000	62277000	61366000	51818	5396	48795	312898;312899;312900;312901;312902;312903;312904;312905;312906;312907	421075;421076;421077;421078;421079;421080;421081;421082;421083;421084;421085	421075	3394		11	
TSAVSNTK	1	Unmodified	806.4134	0.41339662	3627	Q8NDC0	MAPK1IP1L	MAPK-interacting and spindle-stabilizing protein-like	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.7331	4.4191	2	0.001145	2328	160511_QHF_FH_JSI12i_1	93.429	55.87			1.1575	1.1683	139.91	4	1	Median	0.23251	0.19277	NaN	1	0	Median	4.0081	4.7702	NaN	1	1	Median	2.2052	2.0984	NaN	1	0	Median	0.60762	0.6504	NaN	1	0	Median	1088200000	487040000	601180000	98710000	77950000	20760000	262380000	44494000	217890000	314840000	110500000	204340000	412300000	254100000	158190000	51819	3627	48796	312908;312909;312910;312911	421086;421087;421088;421089;421090	421089			5	
TSCALTIHAIGR	0	Unmodified	1298.6765	0.67650438	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			39.721	38.23	3	0.032954	31886	160511_QHF_FH_JSI10i_3	24.964	20.775			0.94156	1.0733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94156	1.0733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35674000	16894000	18781000	0	0	0	35674000	16894000	18781000	0	0	0	0	0	0	51820	2997	48797	312912	421091	421091			1	
TSCGSPNYAAPEVISGR	0	Unmodified	1764.8101	0.81009732	2356;1826	P54646;Q13131	PRKAA2;PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-2;5'-AMP-activated protein kinase catalytic subunit alpha-1	no	no	0	0	0	0				By MS/MS	1	0	2												2	44.351	43.707	2	6.7927E-11	39719	160511_QHF_FH_JSI12i_1	106.32	92.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51821	1826;2356	48798	312913;312914	421092;421093	421092			2	
TSDANINWNNLK	1	Unmodified	1388.6684	0.66844211	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								3	4	2	1	50.67	49.978	2	1.9877E-14	44563	160511_QHF_FH_JSI9i_1	137.46	120.74		+	0.6098	0.65198	25.895	8	7	Plateau	0.81805	0.68658	33.038	2	2	Median	0.5687	0.6645	31.777	3	3	Plateau	0.60995	0.59952	4.5075	2	2	Median	0.62365	0.65791	NaN	1	0	Median	1126200000	636940000	489280000	150360000	88114000	62242000	407840000	236700000	171150000	349670000	203310000	146360000	218340000	108820000	109530000	51822	66	48799	312915;312916;312917;312918;312919;312920;312921;312922;312923;312924	421094;421095;421096;421097;421098;421099;421100;421101;421102;421103;421104	421100			11	
TSDFLKVLNR	1	Acetyl (K)	1233.6717	0.67173657	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.995	68.408	2	0.00075957	36331	160513_QHF_FH_JSI11Kac_5	89.047	69.776			0.33175	0.32995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33175	0.32995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16800000	12559000	4240100	0	0	0	0	0	0	16800000	12559000	4240100	0	0	0	51823	256	48800	312925	421105	421105	140		1	
TSDFNTFLAQEGCTK	1	Unmodified	1717.7618	0.76175015	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		61.964	61.202	2;3	0.00010021	54417	160511_QHF_FH_JSI9i_1	136.21	116.65			1.7229	1.5429	83.309	2	0	Median	3.3906	2.7807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87549	0.85603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162870000	59656000	103210000	72165000	17721000	54444000	0	0	0	90700000	41935000	48765000	0	0	0	51824	5296	48801	312926;312927	421106;421107	421107			2	
TSDIFEADIANDVK	1	Unmodified	1536.7308	0.7307676	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.88	69.286	2	0.045017	62934	160511_QHF_FH_JSI12i_1	45.653	33.939			0.99247	1.0228	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99247	1.0228	NaN	1	1	Median	71171000	17060000	54111000	0	0	0	0	0	0	0	0	0	71171000	17060000	54111000	51825	605	48802	312928	421108	421108			1	
TSDIFGSPVTATSR	0	Unmodified	1437.71	0.70997257	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	2	3	55.156	50.592	2	7.9492E-07	46148	160511_QHF_FH_JSI11i_1	137.01	118.74			0.90205	0.91076	16.79	8	0	Median	0.91117	0.76123	NaN	1	0	Median	0.77276	0.91076	0.42297	2	0	Median	0.96373	0.94103	13.017	2	0	Median	0.93163	0.96954	27.232	3	0	Median	2094300000	1109700000	984640000	351010000	182070000	168940000	483320000	260470000	222850000	598110000	309590000	288520000	661910000	357580000	304330000	51826	4795	48803	312929;312930;312931;312932;312933;312934;312935;312936	421109;421110;421111;421112;421113;421114;421115;421116;421117;421118;421119;421120;421121;421122;421123;421124	421110			16	
TSDISTLGHLVITTQGGYVK	1	Unmodified	2089.1055	0.10553429	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.125	77.394	3	0.044944	68812	160511_QHF_FH_JSI10i_2	20.077	10.516			0.45588	0.5571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.45588	0.5571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44790000	31938000	12852000	0	0	0	44790000	31938000	12852000	0	0	0	0	0	0	51827	4936	48804	312937	421125	421125			1	
TSDKPLMYR	1	Acetyl (K)	1151.5645	0.56449431	3192	Q6ZU65	UBN2	Ubinuclein-2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	1	2	46.217	36.007	2	6.3183E-11	20935	160513_QHF_FH_JSI12Kac_4	154.49	120.94			0.99057	1.019	8.5732	4	0	Median	NaN	NaN	NaN	0	0	Median	0.75269	0.90493	NaN	1	0	Median	1.0159	0.9847	NaN	1	0	Median	0.99057	1.0777	3.063	2	0	Median	94056000	49102000	44954000	0	0	0	31195000	17172000	14023000	37451000	18515000	18936000	25410000	13415000	11995000	51828	3192	48805	312938;312939;312940;312941	421126;421127	421127	2793		2	
TSDKPLMYR	1	Acetyl (K);Oxidation (M)	1167.5594	0.55940893	3192	Q6ZU65	UBN2	Ubinuclein-2	yes	yes	1	0	1	1				By MS/MS	14	0							1						1	36.946	27.401	2	0.016652	16519	160513_QHF_FH_JSI12Kac_4	47.198	42.658			0.95998	1.0418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95998	1.0418	NaN	1	0	Median	8592100	4641000	3951100	0	0	0	0	0	0	0	0	0	8592100	4641000	3951100	51829	3192	48805	312942	421128	421128	2793	2212	1	
TSDLIVLGLPWK	1	Unmodified	1340.7704	0.77038799	2360	Q13148	TARDBP	TAR DNA-binding protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.62	2	4	2						4	3	3	3	3	97.898	95.061	2	1.0879E-53	88753	160511_QHF_FH_JSI11i_2	223.08	211.91			0.90071	0.93688	22.428	12	1	Median	1.1174	0.93435	25.079	3	1	Median	0.86785	1.0432	18.043	3	0	Plateau	0.93426	0.93942	27.01	3	0	Plateau	0.99232	1.1098	17.337	3	0	Plateau	3759100000	1929200000	1830000000	1831400000	920450000	910970000	481700000	266930000	214770000	858490000	428520000	429970000	587510000	313250000	274260000	51830	2360	48806	312943;312944;312945;312946;312947;312948;312949;312950;312951;312952;312953;312954	421129;421130;421131;421132;421133;421134;421135;421136;421137;421138;421139;421140;421141;421142;421143	421136			14	
TSDLVEEYFEAHSSSK	1	Unmodified	1827.8163	0.81628814	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	63.888	63.512	3	2.8545E-07	54860	160511_QHF_FH_JSI12i_3	115.8	112.2			0.66264	0.80789	21.707	3	2	Median	NaN	NaN	NaN	0	0	Median	0.66264	0.80789	NaN	1	1	Median	0.65314	0.61468	NaN	1	1	Median	0.93617	0.94377	NaN	1	0	Median	178540000	98054000	80488000	0	0	0	35467000	22968000	12499000	59367000	31928000	27439000	83708000	43158000	40550000	51831	2402	48807	312955;312956;312957	421144;421145;421146;421147	421147			4	
TSDPNPAAPDSESVIVAMER	0	Unmodified	2084.9684	0.96844846	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	67.153	66.335	2	0.0012141	58916	160511_QHF_FH_JSI9i_1	55.656	43.295			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51832	1549	48808	312958;312959	421148;421149	421149			2	
TSDPTQDLHFTPLLSPSSSTSASSTAK	1	Unmodified	2762.3246	0.32464778	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		73.778	73.453	3	0.00027573	66778	160511_QHF_FH_JSI11i_1	45.957	38.597			1.2336	1.1946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2336	1.1946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18725000	4479000	14246000	0	0	0	0	0	0	18725000	4479000	14246000	0	0	0	51833	4584	48809	312960	421150	421150			1	
TSDQTWVK	1	Unmodified	963.46616	0.46616048	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	18.731	18.262	2	0.0099826	15768	160511_QHF_FH_JSI12i_1	55.531	29.637			0.89651	0.92018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89651	0.92018	NaN	1	0	Median	187690000	89428000	98260000	0	0	0	0	0	0	0	0	0	187690000	89428000	98260000	51834	2517	48810	312961	421151;421152	421151			2	
TSDSPWFLSGSETLGR	0	Unmodified	1738.8162	0.81622856	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	79.773	78.852	2	2.7986E-05	68055	160511_QHF_FH_JSI12i_2	112.51	90.46			0.81481	0.85838	20.124	4	4	Median	0.78036	0.67907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81748	0.85474	NaN	1	1	Median	0.91039	0.97877	17.959	2	2	Median	92983000	47224000	45758000	19234000	6682300	12551000	0	0	0	21947000	12822000	9125100	51802000	27720000	24082000	51835	641	48811	312962;312963;312964;312965;312966;312967	421153;421154;421155;421156;421157;421158	421153			6	
TSDSTFLVFMSHGIR	0	Unmodified	1696.8243	0.82429083	1323	P29466	CASP1	Caspase-1;Caspase-1 subunit p20;Caspase-1 subunit p10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	3	2	1	82.401	76.697	3	4.5656E-08	38943	160513_QHF_FH_JSI12Kac_6	116.96	103.24			0.95866	0.94432	13.517	6	2	Median	1.1392	0.95398	NaN	1	0	Median	0.76741	0.89756	5.7423	2	1	Median	1.0144	0.92791	23.238	2	1	Median	1.0451	1.1179	NaN	1	0	Median	677180000	360940000	316240000	131010000	67910000	63097000	228100000	127750000	100350000	232390000	127950000	104440000	85689000	37330000	48359000	51836	1323	48812	312968;312969;312970;312971;312972;312973;312974	421159;421160;421161;421162;421163;421164;421165	421164			7	
TSDTETEPSK	1	Unmodified	1093.4775	0.47751302	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.9275	5.6036	2	8.6279E-10	3625	160511_QHF_FH_JSI12i_1	137.28	94.678			1.1496	1.2502	29.158	4	0	Median	0.89341	0.72488	NaN	1	0	Median	1.0505	1.2304	NaN	1	0	Median	1.4545	1.3717	NaN	1	0	Median	1.2579	1.2704	NaN	1	0	Median	352540000	194280000	158260000	82419000	49550000	32869000	92749000	49161000	43588000	63041000	25799000	37241000	114340000	69773000	44562000	51837	1576	48813	312975;312976;312977;312978	421166;421167;421168;421169;421170;421171	421167			6	
TSDTIAPWFHGILTLK	1	Unmodified	1798.9618	0.96177059	4761	Q9H788	SH2D4A	SH2 domain-containing protein 4A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.37		3	5						2	1	4	3	2	97.751	96.209	2;3	8.0481E-06	83004	160511_QHF_FH_JSI10i_3	98.507	87.463			0.92628	0.96175	38.87	10	6	Median	1.0213	0.87563	NaN	1	0	Median	0.76001	0.91472	28.631	4	3	Median	1.014	0.9633	66.085	3	2	Median	1.14	1.1475	18.753	2	1	Median	1031100000	601660000	429460000	20306000	10674000	9632600	399500000	265360000	134140000	249570000	147910000	101660000	361750000	177720000	184030000	51838	4761	48814	312979;312980;312981;312982;312983;312984;312985;312986;312987;312988	421172;421173;421174;421175;421176;421177;421178;421179;421180;421181;421182;421183;421184;421185;421186;421187;421188;421189;421190;421191	421177			20	
TSDVSQATLASVAPVFTVTK	1	Unmodified	2021.0681	0.06808615	4869	Q9HD23	MRS2	Magnesium transporter MRS2 homolog, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		89.346	89.115	2	1.4832E-07	81227	160511_QHF_FH_JSI11i_1	92.935	71.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51839	4869	48815	312989;312990	421192;421193	421192			2	
TSDVTSTK	1	Unmodified	837.40798	0.40797689	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	3	1	5.3079	3.592	2	0.0012624	2885	160511_QHF_FH_JSI12i_1	91.853	65.744			1.1127	1.0803	10.603	5	2	Median	1.1383	0.94695	NaN	1	0	Median	0.7499	0.89859	NaN	1	1	Median	1.1439	1.1185	4.9036	2	1	Median	1.0243	1.0908	NaN	1	0	Median	2404700000	1230900000	1173800000	328360000	162280000	166070000	698160000	388740000	309420000	691440000	326930000	364510000	686750000	352970000	333780000	51840	1271	48816	312991;312992;312993;312994;312995;312996;312997	421194;421195;421196;421197;421198;421199;421200	421196			7	
TSEDADELHK	1	Unmodified	1143.5044	0.50439647	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.105	9.7242	2	1.6999E-07	7564	160511_QHF_FH_JSI12i_1	118.71	83.904			0.85734	0.90201	8.8644	4	1	Median	1.2297	0.99799	NaN	1	0	Median	0.80229	0.94953	NaN	1	1	Median	0.90701	0.85687	NaN	1	0	Median	0.81039	0.82434	NaN	1	0	Median	296310000	151580000	144730000	68409000	34328000	34081000	73884000	40848000	33036000	66220000	32012000	34208000	87799000	44389000	43410000	51841	5382	48817	312998;312999;313000;313001	421201;421202;421203;421204;421205;421206	421202			6	
TSEEELQLK	1	Unmodified	1075.5397	0.53971935	5705	Q9Y672	ALG6	Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	29.473	28.99	2	0.0022514	25658	160511_QHF_FH_JSI11i_1	66.351	44.22			1.1273	1.3477	26.758	3	2	Median	NaN	NaN	NaN	0	0	Median	1.1273	1.3477	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1717	1.2455	37.289	2	2	Median	184330000	79683000	104650000	0	0	0	64155000	22586000	41570000	0	0	0	120180000	57097000	63079000	51842	5705	48818	313002;313003;313004;313005	421207;421208;421209;421210	421207			4	
TSEEISLNDAGVELK	1	Unmodified	1603.7941	0.79409613	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.815	63.177	2	2.7074E-06	57601	160511_QHF_FH_JSI12i_1	122.42	98.699			0.74964	0.7461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74964	0.7461	NaN	1	1	Median	16146000	9459800	6686100	0	0	0	0	0	0	0	0	0	16146000	9459800	6686100	51843	2574	48819	313006	421211	421211			1	
TSEFTAAFVGR	0	Unmodified	1184.5826	0.58258722	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.5		4	1					3	1	2	2	3	2	59.152	54.038	2	2.0629E-07	46787	160511_QHF_FH_JSI11i_2	122.44	39.437			1.0012	0.9743	20.587	9	2	Median	1.232	1.0375	27.028	2	0	Median	0.90512	1.0949	33.059	2	0	Median	1.0012	0.9743	23.255	3	1	Median	0.86048	0.92775	10.781	2	1	Median	555870000	280330000	275540000	82485000	37319000	45166000	101430000	58008000	43421000	158520000	75502000	83018000	213440000	109510000	103930000	51844	4193	48820	313007;313008;313009;313010;313011;313012;313013;313014;313015	421212;421213;421214;421215;421216;421217;421218;421219;421220;421221;421222	421218			11	
TSEGVTNEK	1	Unmodified	963.4509	0.45090434	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	6.1719	5.7915	2	2.0452E-06	3701	160511_QHF_FH_JSI10i_1	128.36	72.685			1.0654	1.0316	10.553	5	1	Median	1.2959	1.069	5.0476	2	1	Median	0.76417	0.88359	NaN	1	0	Median	1.0654	1.0486	NaN	1	0	Median	0.83998	0.87936	NaN	1	0	Median	1088600000	528390000	560160000	514500000	240920000	273580000	201710000	102950000	98752000	175170000	75939000	99234000	197180000	108580000	88593000	51845	2419	48821	313016;313017;313018;313019;313020	421223;421224;421225;421226;421227	421225			5	
TSEMNTDK	1	Unmodified	924.38586	0.38586124	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	5.767	5.2907	2	0.000735	3376	160511_QHF_FH_JSI12i_1	98.933	68.748			1.4442	1.3295	9.6162	2	1	Median	1.7422	1.423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1971	1.2421	NaN	1	0	Median	272580000	125060000	147520000	103720000	50210000	53515000	0	0	0	0	0	0	168850000	74849000	94005000	51846	4021	48822	313021;313022;313023;313024	421228;421229;421230;421231	421229			4	
TSENLALTGVDHSLPQDGSNAFISQK	1	Unmodified	2728.3304	0.33040186	428	O60563	CCNT1	Cyclin-T1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.25	0.433	3	1										1	3	71.333	70.626	3	2.6577E-09	64332	160511_QHF_FH_JSI12i_1	70.213	57.658			1.0108	1.0728	29.226	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69499	0.65362	NaN	1	1	Median	1.0539	1.146	11.793	3	3	Median	191090000	116640000	74449000	0	0	0	0	0	0	64359000	46922000	17437000	126730000	69717000	57013000	51847	428	48823	313025;313026;313027;313028	421232;421233;421234;421235;421236	421236			5	
TSEPQLK	1	Unmodified	801.42323	0.42323303	88	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		12.367	11.941	2	0.016755	9561	160511_QHF_FH_JSI11i_1	63.148	34.725			0.8555	1.11	6.4581	3	2	Plateau	1.3459	1.11	NaN	1	1	Median	0.8555	1.0065	NaN	1	0	Median	1.1723	1.137	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	493070000	251480000	241590000	156620000	77649000	78966000	171910000	100530000	71388000	164540000	73303000	91234000	0	0	0	51848	88	48824	313029;313030;313031	421237;421238;421239	421237			3	
TSEQTGEPAEDTSGVIK	1	Unmodified	1747.8112	0.81120276	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.191	29.592	2	3.1354E-11	25801	160511_QHF_FH_JSI9i_1	152.4	117.87			0.93709	0.9368	7.8956	4	0	Median	1.0987	0.88249	NaN	1	0	Median	0.89356	1.0639	NaN	1	0	Median	0.97773	0.93063	NaN	1	0	Median	0.89815	0.943	NaN	1	0	Median	142890000	75262000	67623000	40912000	18044000	22868000	36754000	24706000	12048000	22907000	11688000	11220000	42311000	20825000	21486000	51849	5100	48825	313032;313033;313034;313035	421240;421241;421242;421243;421244;421245;421246;421247	421247			8	
TSESLCQNNMVILK	1	Unmodified	1635.796	0.79602716	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	56.883	56.228	2	6.2714E-52	50672	160511_QHF_FH_JSI10i_1	217.22	190.55			1.0087	1.0129	23.724	4	0	Median	1.1711	1.0002	NaN	1	0	Median	0.86885	1.0257	NaN	1	0	Median	0.78571	0.77306	NaN	1	0	Median	1.3418	1.3806	NaN	1	0	Median	385790000	182150000	203640000	65567000	30496000	35071000	109760000	50888000	58868000	110660000	55508000	55149000	99807000	45255000	54552000	51850	231	48826	313036;313037;313038;313039	421248;421249;421250	421248			3	
TSESTGSLPSPFLR	0	Unmodified	1477.7413	0.7412727	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.68		4	2				2	1		3	1	3	2	66.114	61	2	5.574E-52	54031	160511_QHF_FH_JSI10i_2	218.15	202.18			0.97816	1.0335	11.667	7	1	Median	1.0787	0.92145	23.854	2	1	Median	0.8168	0.98093	NaN	1	0	Median	1.0204	1.0227	3.4165	2	0	Median	0.96319	1.0625	3.9092	2	0	Median	614730000	311710000	303030000	134950000	65095000	69853000	147940000	81072000	66868000	181960000	87348000	94614000	149880000	78192000	71690000	51851	696	48827	313040;313041;313042;313043;313044;313045;313046;313047;313048	421251;421252;421253;421254;421255;421256;421257;421258;421259;421260;421261;421262;421263;421264;421265;421266	421265			16	
TSESTTTVK	1	Unmodified	952.47131	0.47130543	4226	Q96RT1	ERBB2IP	Protein LAP2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.0161	5.7782	2	0.023767	3773	160511_QHF_FH_JSI10i_1	49.444	23.994			1.3818	1.6165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3818	1.6165	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92211000	41582000	50629000	0	0	0	92211000	41582000	50629000	0	0	0	0	0	0	51852	4226	48828	313049	421267	421267			1	
TSETLSQAGQK	1	Unmodified	1148.5673	0.56733108	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	5.47	4		2		3	3				2	4	3	3	13.506	9.9324	2	7.1555E-13	8526	160511_QHF_FH_JSI11i_1	169.09	169.09			0.87094	0.89938	14.133	11	1	Median	1.3637	1.0871	17.057	2	0	Median	0.71022	0.83104	13.533	4	1	Median	0.94574	0.9213	10.519	2	0	Median	0.73529	0.7822	8.8521	3	0	Plateau	4417100000	2191400000	2225700000	1058800000	384510000	674250000	1190100000	662450000	527620000	1106100000	541050000	565000000	1062200000	603370000	458830000	51853	1858	48829	313050;313051;313052;313053;313054;313055;313056;313057;313058;313059;313060;313061	421268;421269;421270;421271;421272;421273;421274;421275;421276;421277;421278;421279;421280;421281;421282;421283;421284	421269			17	
TSEVDLAKPLVK	2	Acetyl (K)	1340.7551	0.75513185	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	72.342	63.682	2	0.008298	31610	160513_QHF_FH_JSI11Kac_3	59.426	49.194			0.56105	0.56411	50.411	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40527	0.39496	NaN	1	0	Median	0.77671	0.80571	NaN	1	0	Median	2665600	1525300	1140300	0	0	0	0	0	0	1337000	871300	465690	1328600	654000	674570	51854	3766	48830	313062;313063	421285	421285	2932		1	
TSEVIEDEK	1	Acetyl (Protein N-term)	1090.503	0.50299949	4463	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	yes	yes	0	1	0	0		By MS/MS	By MS/MS	By MS/MS	11	0				3							1	1	1	41.409	32.519	2	0.0011103	13734	160513_QHF_FH_JSI12Kacf_1	45.161	28.958			0.99951	1.084	5.3651	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94861	1.0436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0531	1.1259	NaN	1	0	Median	4081000	1748900	2332100	0	0	0	1950500	849930	1100600	0	0	0	2130500	898960	1231600	51855	4463	48831	313064;313065;313066	421286;421287;421288;421289	421287			4	
TSEVNCYR	0	Unmodified	1027.4393	0.4392938	2011	P62633	CNBP	Cellular nucleic acid-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.507	10.123	2	0.0050585	7884	160511_QHF_FH_JSI10i_1	66.799	62.389			0.77575	0.84729	40.13	4	1	Median	1.9355	1.6432	NaN	1	0	Median	0.68799	0.80284	NaN	1	0	Median	0.66052	0.64316	NaN	1	1	Median	0.8747	0.89421	NaN	1	0	Median	217050000	121580000	95476000	31266000	14964000	16303000	72344000	34609000	37735000	58601000	36363000	22238000	54840000	35640000	19200000	51856	2011	48832	313067;313068;313069;313070	421290;421291;421292;421293;421294	421293			5	
TSEVPYAGINIGPVHK	1	Unmodified	1680.8835	0.88352026	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.55	4.94		7	2					2		3	1	4	3	62.829	60.043	2;3	5.7562E-07	51509	160511_QHF_FH_JSI12i_2	162.36	145.34			1.5544	1.4539	100.74	10	9	Median	2.5623	2.2249	44.289	3	3	Plateau	2.4486	3.0199	NaN	1	1	Median	1.7733	1.7816	149.4	4	4	Median	1.1416	1.257	12.545	2	1	Median	2450700000	509230000	1941400000	368140000	120450000	247690000	46468000	16760000	29708000	1721100000	227260000	1493900000	314900000	144760000	170150000	51857	454	48833	313071;313072;313073;313074;313075;313076;313077;313078;313079;313080;313081	421295;421296;421297;421298;421299;421300;421301;421302;421303;421304;421305;421306;421307	421297			13	
TSEVPYAGINIGPVHKK	2	Unmodified	1808.9785	0.97848328	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	49.824	49.081	3;4	1.3174E-09	41713	160511_QHF_FH_JSI12i_3	140.93	136.75			0.92449	0.96693	14.857	7	1	Median	1.5196	1.2358	NaN	1	1	Median	0.91294	1.084	1.7692	2	0	Median	0.97894	0.92505	6.2616	2	0	Median	0.83607	0.84653	6.8117	2	0	Median	1086500000	574540000	511940000	26926000	10484000	16442000	187540000	101660000	85887000	446830000	250580000	196260000	425180000	211820000	213360000	51858	454	48834	313082;313083;313084;313085;313086;313087;313088	421308;421309;421310;421311;421312;421313;421314;421315;421316;421317	421315			9	
TSEVPYAGINIGPVHKK	2	Acetyl (K)	1850.989	0.98904797	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	1	0	0	1			By MS/MS		15.3	0.471								2	1			3		72.702	62.392	3	0.00083186	33435	160513_QHF_FH_JSI11Kac_5	73.833	63.669			12.404	12.188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12.404	12.188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53878000	19230000	34648000	0	0	0	0	0	0	53878000	19230000	34648000	0	0	0	51859	454	48834	313089;313090;313091	421318;421319;421320	421320	229		3	
TSEVQELQNDLDRETSSLQELEAQK	1	Unmodified	2889.384	0.38395357	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								2	1	1	1	96.362	96.178	3	9.4711E-17	84438	160511_QHF_FH_JSI9i_2	123.43	112.02			0.89188	0.87971	8.8456	5	3	Median	1.0533	0.91615	8.6007	2	1	Median	0.89188	1.0287	NaN	1	1	Median	0.82773	0.83366	NaN	1	0	Median	0.78646	0.87971	NaN	1	1	Median	111760000	58912000	52849000	54415000	23237000	31178000	17272000	11395000	5877800	24869000	13624000	11245000	15204000	10657000	4547100	51860	5230	48835	313092;313093;313094;313095;313096	421321;421322;421323;421324;421325;421326;421327;421328	421324			8	
TSFDKPDQMAALFK	2	Unmodified	1597.781	0.78102903	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.808	69.51	3	0.01888	60200	160511_QHF_FH_JSI12i_3	37.555	25.64			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51861	5507	48836	313097	421329	421329			1	
TSFFHVK	1	Unmodified	864.44939	0.4493882	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	3	3	2	32.362	31.619	2;3	0.0022554	26442	160511_QHF_FH_JSI12i_3	73.616	57.472			0.87276	0.92988	20.388	11	0	Median	1.0834	0.87487	13.511	3	0	Median	0.87276	0.98978	24.181	3	0	Plateau	1.0614	0.97817	20.245	3	0	Median	0.73427	0.74922	5.7314	2	0	Median	4866800000	2237800000	2629000000	1162700000	484570000	678110000	1143000000	531690000	611260000	1052400000	496100000	556290000	1508800000	725430000	783340000	51862	4017	48837	313098;313099;313100;313101;313102;313103;313104;313105;313106;313107;313108	421330;421331;421332;421333;421334;421335;421336;421337;421338;421339;421340;421341;421342;421343;421344;421345;421346;421347;421348;421349;421350;421351	421349			22	
TSFFLGEVGNAAK	1	Unmodified	1339.6772	0.67721588	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	69.138	68.362	2	8.3711E-31	60568	160511_QHF_FH_JSI11i_3	164.33	141.02			1.1543	1.1591	11.503	5	1	Median	1.2837	1.1061	NaN	1	0	Median	1.1829	1.4528	NaN	1	0	Median	1.0469	1.0947	NaN	1	0	Median	1.0884	1.1683	1.1268	2	1	Median	429450000	183030000	246420000	59048000	25533000	33515000	66216000	31468000	34748000	78281000	37909000	40372000	225900000	88118000	137790000	51863	2827	48838	313109;313110;313111;313112;313113;313114;313115	421352;421353;421354;421355;421356;421357;421358;421359;421360	421352			8	
TSFFLVR	0	Unmodified	868.48069	0.48068833	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	69.008	62.628	2	0.0079244	33288	160513_QHF_FH_JSI9Kac_6	88.35	57.292			0.89137	0.84587	24.382	6	0	Median	1.0076	0.83569	16.139	2	0	Median	0.62774	0.72834	48.907	2	0	Median	0.88901	0.88646	NaN	1	0	Median	0.74791	0.80713	NaN	1	0	Median	265230000	144600000	120630000	111810000	56956000	54851000	103300000	60299000	43005000	34725000	18946000	15779000	15393000	8399700	6993000	51864	3720	48839	313116;313117;313118;313119;313120;313121	421361;421362;421363;421364;421365;421366;421367;421368	421366			8	
TSFFQALGITTK	1	Unmodified	1312.7027	0.70270235	837	P05388;Q8NHW5	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.82	2	5	12					3	4	7	7	6	6	90.588	87.155	2;3	1.3019E-41	79470	160511_QHF_FH_JSI12i_3	202.16	189.93			0.95088	0.98379	24.194	21	5	Median	1.1857	1.0525	38.808	6	2	Median	0.84803	1.0295	14.488	5	0	Median	0.94871	0.92368	7.191	6	1	Median	0.88828	0.93888	9.5936	4	2	Median	39298000000	18222000000	21076000000	9794500000	4204000000	5590500000	8858600000	4555500000	4303100000	9811300000	4559200000	5252200000	10833000000	4903700000	5929800000	51865	837	48840	313122;313123;313124;313125;313126;313127;313128;313129;313130;313131;313132;313133;313134;313135;313136;313137;313138;313139;313140;313141;313142;313143;313144;313145;313146;313147	421369;421370;421371;421372;421373;421374;421375;421376;421377;421378;421379;421380;421381;421382;421383;421384;421385;421386;421387;421388;421389;421390;421391;421392;421393;421394;421395;421396;421397;421398;421399;421400;421401;421402;421403;421404;421405;421406;421407;421408;421409;421410;421411;421412;421413;421414;421415;421416	421411			48	
TSFHALTSILK	1	Unmodified	1216.6816	0.68157298	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	0.276		1	11							3	4	3	2	65.059	64.25	2;3	2.3925E-09	52934	160511_QHF_FH_JSI9i_3	129.85	84.77			0.81981	0.8427	25.482	11	2	Median	1.2507	0.98581	29.671	3	1	Median	0.89338	1.008	4.3392	3	0	Median	0.81981	0.77306	31.476	3	1	Median	0.7963	0.8301	2.1297	2	0	Median	3134500000	1606900000	1527600000	796900000	315240000	481660000	639430000	298360000	341080000	953110000	590690000	362420000	745090000	402620000	342470000	51866	2198	48841	313148;313149;313150;313151;313152;313153;313154;313155;313156;313157;313158;313159	421417;421418;421419;421420;421421;421422;421423;421424;421425;421426;421427;421428;421429;421430;421431;421432;421433;421434;421435;421436;421437;421438;421439;421440;421441;421442;421443;421444;421445;421446;421447;421448;421449;421450;421451;421452;421453;421454;421455;421456;421457;421458	421439			42	
TSFLDDAFRK	1	Unmodified	1198.5982	0.59823728	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	56.857	55.969	3	7.4304E-15	48023	160511_QHF_FH_JSI12i_3	151.22	138.95			0.95016	0.97369	6.3482	8	0	Median	1.1779	0.97797	0.2166	2	0	Median	0.86289	1.0213	9.7963	2	0	Median	0.97754	0.94294	4.1361	2	0	Median	0.89006	0.9631	10.019	2	0	Median	1498500000	796950000	701540000	152220000	72647000	79569000	272060000	154710000	117350000	493330000	242550000	250780000	580900000	327050000	253850000	51867	2517	48842	313160;313161;313162;313163;313164;313165;313166;313167	421459;421460;421461;421462;421463;421464;421465;421466;421467;421468;421469;421470;421471;421472;421473;421474;421475	421474			17	
TSFNLLPQPSSIVLEEDHK	1	Unmodified	2153.1004	0.10044891	3086	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.608	87.476	3	0.0040094	75967	160511_QHF_FH_JSI12i_3	45.696	38.074			2.0473	2.0959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0473	2.0959	NaN	1	1	Median	15687000	5946300	9740500	0	0	0	0	0	0	0	0	0	15687000	5946300	9740500	51868	3086	48843	313168	421476	421476			1	
TSFNYAMK	1	Unmodified	960.4375	0.43750288	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.22	3	4	2				1	4		2	3	5	4	39.718	35.399	2	3.8035E-05	30200	160511_QHF_FH_JSI12i_2	137.18	121.03			0.9719	1.073	9.0824	13	0	Median	1.2469	1.0593	1.8174	2	0	Median	1.0065	1.2105	5.6225	3	0	Plateau	0.92981	0.97636	6.7537	4	0	Linear	0.96865	1.0275	9.2815	4	0	Median	4846500000	2501100000	2345400000	775790000	364320000	411470000	1188600000	602060000	586530000	1782800000	934640000	848180000	1099300000	600100000	499230000	51869	1080	48844	313169;313170;313171;313172;313173;313174;313175;313176;313177;313178;313179;313180;313181;313182	421477;421478;421479;421480;421481;421482;421483;421484;421485;421486;421487;421488;421489;421490;421491;421492;421493;421494	421481			18	
TSFPEDTVITYK	1	Unmodified	1399.6871	0.68711187	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	6	4	4	1			2	3	1		4	4	3	4	64.899	60.725	2	4.0364E-18	55284	160511_QHF_FH_JSI12i_1	195.27	176.96			0.95566	0.99284	23.163	14	2	Median	0.90009	0.75876	26.424	4	2	Median	0.82372	0.97124	4.0662	3	0	Median	1.0194	0.99979	6.5463	3	0	Median	0.99142	1.1028	10.693	4	0	Median	6477200000	3192500000	3284700000	1613200000	702620000	910570000	1417400000	714400000	703010000	1838200000	941010000	897220000	1608400000	834490000	773890000	51870	893	48845	313183;313184;313185;313186;313187;313188;313189;313190;313191;313192;313193;313194;313195;313196;313197	421495;421496;421497;421498;421499;421500;421501;421502;421503;421504;421505;421506;421507;421508;421509;421510;421511;421512;421513;421514;421515;421516;421517;421518;421519;421520;421521;421522;421523;421524;421525;421526;421527;421528	421503			34	
TSFQMAGEWLK	1	Unmodified	1296.6173	0.61725816	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	74.594	73.729	2	9.865E-06	64734	160511_QHF_FH_JSI11i_2	110.66	97.308			0.95787	0.99099	26.189	6	3	Median	0.81247	0.69187	35.166	2	1	Median	0.81378	0.99636	NaN	1	1	Median	0.98025	0.98564	NaN	1	1	Median	1.0108	1.0723	3.1869	2	0	Median	455400000	216490000	238910000	79663000	42349000	37314000	114650000	54648000	60005000	117210000	47181000	70025000	143880000	72314000	71563000	51871	4831	48846	313198;313199;313200;313201;313202;313203;313204	421529;421530;421531;421532;421533;421534;421535	421533			6	
TSFTPVGDVFELNFMNVK	1	Unmodified	2043.9976	0.99756374	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	101.9	101.78	2;3	0	87666	160511_QHF_FH_JSI12i_2	409.84	386.79			1.0569	1.164	13.341	5	0	Median	1.0569	0.89729	NaN	1	0	Median	1.0424	1.2666	NaN	1	0	Median	1.156	1.1696	4.2586	2	0	Median	1.0463	1.164	NaN	1	0	Median	1462300000	714160000	748100000	201000000	99681000	101320000	255660000	132180000	123490000	640470000	302880000	337590000	365120000	179420000	185700000	51872	817	48847	313205;313206;313207;313208;313209	421536;421537;421538;421539;421540;421541;421542;421543;421544	421536			9	
TSFVNFTDICK	1	Unmodified	1330.6227	0.62273747	1169	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	6.17	3	4						3		2	1	3	4	73.556	70.361	2	2.8389E-09	36057	160513_QHF_FH_JSI11Kac_5	123.79	94.018			1.3341	1.3944	18.989	8	1	Median	1.657	1.4355	NaN	1	0	Median	1.2768	1.5598	NaN	1	1	Median	1.2943	1.2977	15.777	3	0	Median	1.3751	1.5455	23.089	3	0	Median	735810000	351700000	384100000	79028000	31213000	47815000	128150000	67752000	60403000	314610000	159510000	155100000	214010000	93229000	120790000	51873	1169	48848	313210;313211;313212;313213;313214;313215;313216;313217;313218;313219	421545;421546;421547;421548;421549;421550;421551;421552;421553;421554	421553			10	
TSGELFAQAPVDQFPGTAVESVTDSSR	0	Unmodified	2795.325	0.32498213	5056	Q9NVZ3	NECAP2	Adaptin ear-binding coat-associated protein 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				93.111	92.359	3	0.015988	81941	160511_QHF_FH_JSI9i_1	28.686	21.153			1.9581	1.6009	NaN	1	1	Median	1.9581	1.6009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16918000	5311400	11607000	16918000	5311400	11607000	0	0	0	0	0	0	0	0	0	51874	5056	48849	313220	421555	421555			1	
TSGETTQTHTEPTGDSK	1	Unmodified	1775.781	0.78096527	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	6.8522	6.3579	2	7.8035E-05	4141	160511_QHF_FH_JSI9i_1	77.912	69.399			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51875	1576	48850	313221;313222	421556;421557	421557			2	
TSGGLLSEAPNEK	1	Unmodified	1301.6463	0.64630969	5162	Q9NZM5	GLTSCR2	Glioma tumor suppressor candidate region gene 2 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.824	34.218	2	0.0032235	30783	160511_QHF_FH_JSI11i_1	56.087	38.348			0.8176	0.843	11.233	4	0	Median	1.1039	0.90976	NaN	1	0	Median	0.67198	0.79	NaN	1	0	Median	0.75738	0.71895	NaN	1	0	Median	0.88261	0.89955	NaN	1	0	Median	214710000	98437000	116280000	43751000	24782000	18969000	37823000	22117000	15706000	51265000	26294000	24972000	81875000	25244000	56630000	51876	5162	48851	313223;313224;313225;313226	421558;421559;421560;421561	421558			4	
TSGGMTDPEK	1	Oxidation (M)	1037.4335	0.43353972	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		5.6368	-1.6812	2	0.058185	1943	160513_QHF_FH_JSI11Kac_3	49.418	21.893			0.84304	0.81583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84304	0.81583	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3564600	1677900	1886700	0	0	0	0	0	0	3564600	1677900	1886700	0	0	0	51877	3382	48852	313227	421562	421562			1	
TSGGMTDPEK	1	Unmodified	1021.4386	0.4386251	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.546	9.7575	2	0.011309	7335	160511_QHF_FH_JSI9i_1	56.434	45.212			0.67453	0.55188	NaN	1	1	Median	0.67453	0.55188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105220000	55824000	49397000	105220000	55824000	49397000	0	0	0	0	0	0	0	0	0	51878	3382	48852	313228	421563	421563			1	
TSGHDHPDVATMLNILALVYR	0	Unmodified	2322.1791	0.17905036	2258;4625	Q9H0B6;Q07866	KLC2;KLC1	Kinesin light chain 2;Kinesin light chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									5	1	2	1	1	95.871	88.001	3;4	1.0362E-21	49360	160513_QHF_FH_JSI9Kac_6	134.21	124.93			1.0287	1.1828	36.452	5	1	Median	0.78265	0.66355	NaN	1	0	Median	0.98891	1.1476	4.2699	2	1	Median	1.6329	1.551	NaN	1	0	Median	1.5567	1.6734	NaN	1	0	Median	574460000	268020000	306440000	96567000	50783000	45784000	304320000	139700000	164620000	81008000	30911000	50097000	92569000	46625000	45943000	51879	4625;2258	48853	313229;313230;313231;313232;313233	421564;421565;421566	421564			3	
TSGHLLLGVVR	0	Unmodified	1150.6822	0.68224168	396	O60216;Q9H4I0	RAD21;RAD21L1	Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.2	4.63		1							7	2	3	1	2	54.763	45.474	2;3	8.3322E-08	24897	160513_QHF_FH_JSI10Kac_6	91.549	76.405			1.0195	0.91384	22.297	7	0	Median	0.94298	0.80346	10.926	2	0	Median	0.75202	0.88158	5.0819	2	0	Median	1.15	1.0947	NaN	1	0	Median	1.2129	1.3126	2.1957	2	0	Median	448960000	236270000	212700000	126160000	65242000	60914000	215220000	121230000	93998000	73619000	33856000	39763000	33964000	15941000	18023000	51880	396	48854	313234;313235;313236;313237;313238;313239;313240;313241	421567;421568;421569;421570;421571;421572;421573;421574;421575;421576;421577	421576			11	
TSGIFVKPVNMDNLEK	2	Unmodified	1790.9237	0.92367052	5248	Q9UBQ6	EXTL2	Exostosin-like 2;Processed exostosin-like 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		63.703	62.7	3	0.009087	55730	160511_QHF_FH_JSI11i_3	41.348	30.303			1.1942	0.97514	9.1107	3	1	Median	1.1988	0.97514	NaN	1	1	Median	0.80696	0.92592	NaN	1	0	Median	1.1942	1.1054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	159520000	74058000	85467000	26978000	11018000	15960000	46408000	26631000	19777000	86139000	36408000	49731000	0	0	0	51881	5248	48855	313242;313243;313244	421578;421579;421580;421581	421578			4	
TSGLAGEPEGELSK	1	Unmodified	1373.6674	0.66743906	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35	34.395	2	9.8639E-05	30715	160511_QHF_FH_JSI10i_1	136.06	126.87			1.106	1.0908	8.4296	4	0	Median	1.1569	0.93182	NaN	1	0	Median	0.92407	1.078	NaN	1	0	Median	1.155	1.1184	NaN	1	0	Median	1.0591	1.1037	NaN	1	0	Median	303170000	154280000	148890000	59467000	28656000	30812000	72307000	44665000	27643000	76918000	42936000	33981000	94476000	38024000	56452000	51882	2899	48856	313245;313246;313247;313248	421582;421583;421584;421585	421584			4	
TSGLQQKNVEVK	2	Acetyl (K)	1371.7358	0.73579339	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		40.638	31.625	2	0.0014936	17335	160513_QHF_FH_JSI10Kac_3	79.201	60.89			0.93085	1.0026	11.647	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92028	1.0886	NaN	1	0	Median	0.94155	0.9233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8239600	4023000	4216600	0	0	0	3181400	1767800	1413600	5058200	2255200	2803000	0	0	0	51883	5256	48857	313249;313250	421586;421587;421588	421588	3348		3	
TSGQTFANSNSSR	0	Unmodified	1355.6066	0.60657014	4300	Q99661	KIF2C	Kinesin-like protein KIF2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	10.069	8.7818	2	7.6683E-05	7029	160511_QHF_FH_JSI10i_1	100.38	81.282			0.97418	1.0574	18.132	8	2	Median	1.3144	1.1059	27.732	2	1	Median	0.89469	1.0574	1.9518	2	0	Median	0.89451	0.90612	22.087	3	1	Median	1.1635	1.2259	NaN	1	0	Median	308280000	152970000	155310000	60202000	25465000	34736000	105140000	52279000	52862000	80868000	42745000	38123000	62071000	32478000	29593000	51884	4300	48858	313251;313252;313253;313254;313255;313256;313257;313258;313259	421589;421590;421591;421592;421593;421594;421595;421596;421597;421598;421599;421600	421593			12	
TSGSSSSDVTK	1	Unmodified	1054.4778	0.47784737	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0862	4.7707	2	1.2621E-05	2746	160511_QHF_FH_JSI10i_1	128.03	98.659			2.553	2.6334	19.474	4	4	Median	2.5939	2.1981	NaN	1	1	Median	2.5127	2.9637	NaN	1	1	Median	2.3748	2.3398	NaN	1	1	Median	3.1784	3.3212	NaN	1	1	Median	493680000	177600000	316080000	65990000	22570000	43420000	143190000	60339000	82852000	137030000	52007000	85020000	147470000	42684000	104790000	51885	2911	48859	313260;313261;313262;313263	421601;421602;421603;421604	421603			4	
TSGSVYITLK	1	Unmodified	1067.5863	0.58627561	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	6.08	3	4	4					1	3	3	4	4	4	47.74	44.788	2	1.1584E-09	38187	160511_QHF_FH_JSI12i_3	135.71	127.37			0.97449	0.92455	23.999	13	3	Median	0.97449	0.82687	5.5947	3	1	Plateau	0.75771	0.88291	33.001	4	1	Median	0.83575	0.83485	26.178	2	0	Median	0.99371	1.0697	13.855	4	1	Median	1521400000	780470000	740930000	255280000	120340000	134930000	463590000	281960000	181630000	408130000	194260000	213870000	394400000	183910000	210490000	51886	1466	48860	313264;313265;313266;313267;313268;313269;313270;313271;313272;313273;313274;313275;313276;313277;313278	421605;421606;421607;421608;421609;421610;421611;421612;421613;421614;421615;421616;421617;421618;421619;421620;421621;421622;421623;421624;421625	421624			21	
TSGTEPADFALPSSR	0	Unmodified	1534.7264	0.72635092	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.18	50.682	2	0.00010783	45750	160511_QHF_FH_JSI11i_1	101.6	86.905			0.90535	0.86646	10.889	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86424	1.0392	NaN	1	0	Median	0.92166	0.85537	NaN	1	0	Median	0.8272	0.86646	NaN	1	0	Median	198690000	105970000	92723000	0	0	0	67202000	33528000	33674000	68648000	34992000	33656000	62842000	37449000	25393000	51887	2320	48861	313279;313280;313281	421626;421627;421628	421626			3	
TSGTLISFIYPAQNPELLNK	1	Unmodified	2205.1681	0.16813455	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	91.167	81.725	3	9.3681E-06	44026	160513_QHF_FH_JSI12Kac_6	127.97	112.71			0.98458	1.0283	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98458	1.0283	NaN	1	1	Median	33894000	15197000	18696000	0	0	0	0	0	0	0	0	0	33894000	15197000	18696000	51888	2405	48862	313282	421629	421629			1	
TSGVPSGFNFTAPPVLGK	1	Unmodified	1774.9254	0.92538508	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	3	1	87.278	86.806	2;3	1.6428E-05	76329	160511_QHF_FH_JSI11i_2	114.82	109.32			0.95111	0.92443	17.619	8	2	Median	1.1384	0.96471	28.523	2	1	Median	0.69285	0.82067	7.3025	2	0	Median	1.0361	0.98891	19.316	3	1	Median	1.006	1.0399	NaN	1	0	Median	257460000	131090000	126370000	51553000	25073000	26481000	56091000	31275000	24817000	103170000	51153000	52014000	46644000	23587000	23057000	51889	1443	48863	313283;313284;313285;313286;313287;313288;313289;313290	421630;421631;421632;421633;421634;421635;421636;421637;421638;421639;421640;421641;421642;421643	421639			14	
TSGVVTSCTGVLPQLSMVK	1	Unmodified	1963.0118	0.0118336	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								2	3	4	4	80.846	80.274	2;3	9.6913E-14	73076	160511_QHF_FH_JSI11i_1	152.11	123.9			0.86426	0.98632	26.837	11	0	Median	NaN	NaN	NaN	0	0	Median	0.86426	0.98668	7.781	3	0	Plateau	0.70565	0.70769	9.4943	4	0	Median	1.1708	1.2569	16.227	4	0	Median	351200000	183130000	168070000	0	0	0	70479000	38197000	32282000	142550000	84660000	57893000	138170000	60272000	77893000	51890	1674	48864	313291;313292;313293;313294;313295;313296;313297;313298;313299;313300;313301;313302;313303	421644;421645;421646;421647;421648;421649;421650;421651;421652;421653;421654;421655;421656;421657;421658;421659;421660	421645			17	
TSHGEVISVPHK	1	Unmodified	1289.6728	0.67279921	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	1	3	18.408	18.072	2;3;4	4.4087E-05	14267	160511_QHF_FH_JSI12i_3	67.456	59.89			1.0273	1.0938	12.257	7	0	Median	1.4249	1.1821	NaN	1	0	Median	0.89923	1.1106	11.433	2	0	Median	0.89662	0.83988	NaN	1	0	Median	1.0701	1.0938	4.8599	3	0	Median	681210000	349750000	331460000	26373000	12348000	14025000	79974000	43858000	36116000	85301000	41714000	43586000	489570000	251830000	237740000	51891	2429	48865	313304;313305;313306;313307;313308;313309;313310	421661;421662;421663;421664;421665;421666;421667;421668	421666			8	
TSHILSLQK	1	Unmodified	1025.5869	0.58694431	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			6							2		2	2	25.404	24.936	2;3	3.6579E-05	20507	160511_QHF_FH_JSI12i_3	99.442	85.284			0.81715	0.82137	35.334	3	1	Plateau	1.9602	1.6439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86259	0.92183	16.318	2	0	Median	298290000	142170000	156120000	34770000	11274000	23496000	0	0	0	0	0	0	263520000	130900000	132630000	51892	2574	48866	313311;313312;313313;313314;313315;313316	421669;421670;421671;421672;421673;421674;421675	421673			7	
TSHLAALLK	1	Unmodified	952.57057	0.57056597	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			35.706	34.265	3	4.8699E-05	28649	160511_QHF_FH_JSI10i_3	75.378	58.838			1.0907	1.061	41.583	2	0	Median	1.755	1.4236	NaN	1	0	Median	0.67787	0.79067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	187120000	79782000	107340000	123120000	46515000	76605000	64002000	33267000	30735000	0	0	0	0	0	0	51893	4188	48867	313317;313318	421676;421677;421678	421676			3	
TSHYLTPQSNHLSLSK	1	Unmodified	1811.9166	0.91661131	3136	Q6R327	RICTOR	Rapamycin-insensitive companion of mTOR	yes	yes	0	0	0	0	By MS/MS				3	0			2							2				35.356	33.913	3;4	0.020059	27628	160511_QHF_FH_JSI9i_3	36.638	25.367			1.7516	1.4479	6.0675	2	2	Median	1.7516	1.4479	6.0675	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56031000	18242000	37789000	56031000	18242000	37789000	0	0	0	0	0	0	0	0	0	51894	3136	48868	313319;313320	421679;421680	421679			2	
TSIAIDTIINQK	1	Unmodified	1315.7347	0.73473076	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.66	3	8	6					6		4	6	6	7	71.786	68.39	2;3	1.0403E-109	59704	160511_QHF_FH_JSI12i_3	270.06	258.22			0.96246	0.95944	18.339	22	3	Median	1.1491	0.96058	8.7916	4	0	Median	0.7577	0.88225	9.1618	5	1	Median	1.1251	1.1271	10.426	6	0	Median	0.8214	0.89864	28.588	7	2	Median	4893000000	2407700000	2485400000	675900000	356470000	319430000	980930000	534580000	446350000	1337300000	651950000	685360000	1898900000	864670000	1034200000	51895	1263	48869	313321;313322;313323;313324;313325;313326;313327;313328;313329;313330;313331;313332;313333;313334;313335;313336;313337;313338;313339;313340;313341;313342;313343	421681;421682;421683;421684;421685;421686;421687;421688;421689;421690;421691;421692;421693;421694;421695;421696;421697;421698;421699;421700;421701;421702;421703;421704;421705;421706;421707;421708;421709;421710;421711;421712;421713	421711			30	
TSIDAYDNFDNISLAQR	0	Unmodified	1941.9068	0.90683448	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	76.397	75.86	2	0	69057	160511_QHF_FH_JSI11i_1	408.64	393.74			1.0029	1.0292	13.515	6	3	Median	1.2411	1.0107	NaN	1	0	Median	1.008	1.224	14.909	2	1	Median	1.0827	1.0481	NaN	1	0	Median	0.90793	0.94859	2.6134	2	2	Median	2730800000	1441000000	1289900000	306810000	158430000	148380000	726390000	378890000	347500000	540930000	262460000	278470000	1156700000	641200000	515510000	51896	2155	48870	313344;313345;313346;313347;313348;313349	421714;421715;421716;421717;421718;421719	421714			6	
TSIEDQDELSSLLQVPLVAGTVNR	0	Unmodified	2583.3392	0.33917563	1881	P56537	EIF6	Eukaryotic translation initiation factor 6	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	101.85	101.77	3	7.0319E-11	92547	160511_QHF_FH_JSI10i_1	90.633	84.27			0.7542	0.87757	12.497	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7542	0.87757	NaN	1	0	Median	0.98288	0.9638	NaN	1	0	Median	1.0711	1.124	NaN	1	0	Median	865210000	424720000	440490000	0	0	0	372140000	190390000	181750000	248580000	119320000	129250000	244500000	115010000	129490000	51897	1881	48871	313350;313351;313352	421720	421720			1	
TSIFIAHR	0	Unmodified	943.52395	0.52395013	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	38.618	29.532	2	0.00010022	16498	160513_QHF_FH_JSI10Kac_6	125.25	101.28			0.83169	0.95181	33.275	4	0	Median	1.3289	1.1365	NaN	1	0	Median	0.87465	1.0342	NaN	1	0	Median	0.55273	0.53794	NaN	1	0	Median	0.79085	0.87601	NaN	1	0	Median	54262000	29663000	24599000	11998000	5004700	6992800	23281000	12468000	10813000	14724000	9918400	4806000	4259000	2271800	1987200	51898	464	48872	313353;313354;313355;313356	421721;421722;421723;421724;421725	421725			5	
TSIFWNDVK	1	Unmodified	1108.5553	0.55530983	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.1	6.71		3	2					1	4	3	2	3	2	66.768	61.299	2	1.8447E-05	54275	160511_QHF_FH_JSI10i_2	107.69	91.812			1.1303	1.162	26.751	9	1	Median	1.356	1.1892	6.5756	3	0	Median	0.9601	1.1767	1.7874	2	0	Median	1.7373	1.6393	59.37	2	1	Median	0.98821	1.092	6.6604	2	0	Median	626130000	314280000	311850000	165250000	77045000	88202000	194540000	112830000	81711000	132250000	43958000	88293000	134090000	80446000	53642000	51899	1867	48873	313357;313358;313359;313360;313361;313362;313363;313364;313365;313366	421726;421727;421728;421729;421730;421731;421732;421733;421734	421732			9	
TSIFWNDVKDPVSIEER	1	Unmodified	2034.0058	0.0058202445	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	78.77	78.15	3	1.1444E-05	69619	160511_QHF_FH_JSI11i_3	91.589	81.899			0.92049	0.96148	5.1892	6	0	Median	1.1208	0.97522	NaN	1	0	Median	0.80621	0.96289	6.5327	2	0	Median	0.92883	0.91548	7.3081	2	0	Median	0.97309	0.95893	NaN	1	0	Median	1113200000	557530000	555710000	105410000	46836000	58579000	252200000	124330000	127870000	629050000	317730000	311330000	126570000	68636000	57936000	51900	1867	48874	313367;313368;313369;313370;313371;313372	421735;421736;421737;421738;421739;421740;421741;421742;421743;421744;421745;421746;421747;421748	421736			14	
TSIHEAMEQQSISISK	1	Unmodified	1787.8724	0.87236323	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		10	4						4	4	2	6	6	50.188	47.207	2;3	3.1194E-65	40345	160511_QHF_FH_JSI12i_3	262.43	109.89			0.83557	0.88254	19.676	14	2	Median	1.0452	0.89023	8.3678	3	1	Median	0.68137	0.82522	19.541	2	0	Median	0.70541	0.66814	13.703	5	1	Median	0.98707	1.0111	5.7362	4	0	Median	1423900000	750520000	673420000	203170000	97285000	105880000	50352000	30316000	20036000	470710000	264210000	206500000	699720000	358710000	341000000	51901	1674	48875	313373;313374;313375;313376;313377;313378;313379;313380;313381;313382;313383;313384;313385;313386;313387;313388;313389;313390	421749;421750;421751;421752;421753;421754;421755;421756;421757;421758;421759;421760;421761;421762;421763;421764;421765;421766;421767;421768;421769;421770;421771;421772	421768			24	
TSILAAANPISGHYDR	0	Unmodified	1684.8533	0.85328277	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	5	3	5	3	60.477	58.053	2;3	1.3161E-97	48730	160511_QHF_FH_JSI10i_3	257.95	244.04			1.0391	1.0091	15.494	16	1	Median	1.411	1.1142	14.145	5	0	Median	0.88366	1.0103	8.9634	3	0	Plateau	0.94987	0.94637	6.4377	5	1	Median	1.0525	1.0825	25.206	3	0	Median	2646500000	1269600000	1376800000	764420000	315000000	449420000	730160000	389550000	340610000	826020000	418600000	407420000	325870000	146500000	179380000	51902	2545	48876	313391;313392;313393;313394;313395;313396;313397;313398;313399;313400;313401;313402;313403;313404;313405;313406	421773;421774;421775;421776;421777;421778;421779;421780;421781;421782;421783;421784;421785;421786;421787;421788;421789;421790;421791;421792;421793;421794;421795;421796;421797;421798;421799;421800	421781			27	
TSILAVSDVSSSK	1	Unmodified	1292.6824	0.68236084	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		61.392	50.341	2	0.0060665	28612	160513_QHF_FH_JSI11Kac_4	59.542	48.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51903	2584	48877	313407	421801	421801			1	
TSILAVSDVSSSKPSIK	2	Unmodified	1717.9462	0.9461801	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.763	55.927	3	3.6991E-06	47975	160511_QHF_FH_JSI12i_3	98.062	94.641			1.0844	1.0413	5.8817	4	0	Linear	1.4515	1.1667	NaN	1	0	Median	1.0176	1.1606	NaN	1	0	Median	1.1211	1.0609	NaN	1	0	Median	1.0488	1.0427	NaN	1	0	Median	558360000	253430000	304930000	59115000	23101000	36014000	110220000	51020000	59195000	164280000	71996000	92280000	224750000	107310000	117440000	51904	2584	48878	313408;313409;313410;313411	421802;421803;421804;421805;421806;421807;421808	421807			7	
TSILVFK	1	Unmodified	806.49019	0.49019038	4382	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9	7		3							3	2	1	3		63.673	58.63	2	0.013123	31129	160513_QHF_FH_JSI9Kac_6	85.359	57.105			0.77906	0.71637	57.156	6	3	Median	0.97252	0.82697	13.851	2	1	Median	0.53439	0.65627	NaN	1	0	Median	0.25168	0.24034	83.316	3	2	Plateau	NaN	NaN	NaN	0	0	Median	370810000	229840000	140980000	50165000	25743000	24423000	34745000	25801000	8944300	285900000	178300000	107610000	0	0	0	51905	4382	48879	313412;313413;313414;313415;313416;313417	421809;421810;421811;421812;421813;421814	421814			6	
TSINVVR	0	Unmodified	787.4552	0.45520186	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.37	3	4	1				1	4		2	3	4	4	26.721	22.767	2	0.0075762	13439	160513_QHF_FH_JSI11Kac_5	89.123	61.418			0.78932	0.86799	12.959	13	2	Median	0.91859	0.78403	6.4772	2	0	Median	0.6477	0.79927	11.224	3	0	Median	0.97348	0.95517	17.033	4	1	Median	0.78511	0.87231	13.508	4	1	Median	3295400000	1784100000	1511300000	524740000	270870000	253870000	746820000	447780000	299040000	1388200000	729920000	658300000	635610000	335560000	300050000	51906	1372	48880	313418;313419;313420;313421;313422;313423;313424;313425;313426;313427;313428;313429;313430	421815;421816;421817;421818;421819;421820;421821;421822;421823;421824;421825;421826;421827	421825			13	
TSIPQLENFIQFLLQSAHK	1	Unmodified	2213.1845	0.18445331	1096	P16383	GCFC2	GC-rich sequence DNA-binding factor 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.692	93.972	3	2.505E-05	55238	160513_QHF_FH_JSI10Kac_6	126.4	102.1			0.82346	0.97267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82346	0.97267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129790000	71142000	58647000	0	0	0	129790000	71142000	58647000	0	0	0	0	0	0	51907	1096	48881	313431	421828	421828			1	
TSIPVKDIK	2	Acetyl (K)	1041.607	0.60701105	4209	Q96QE3	ATAD5	ATPase family AAA domain-containing protein 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.4	0.49						3	2				2	2	1	58.427	48.451	2	0.00022055	25899	160513_QHF_FH_JSI12Kac_3	105.52	51.363			1.2533	1.364	16.084	5	0	Median	NaN	NaN	NaN	0	0	Median	0.8984	1.0717	2.7399	2	0	Median	1.4837	1.442	7.8628	2	0	Median	1.2533	1.3776	NaN	1	0	Median	71825000	31122000	40702000	0	0	0	31049000	14942000	16107000	17779000	7717500	10062000	22996000	8462700	14533000	51908	4209	48882	313432;313433;313434;313435;313436	421829;421830;421831;421832;421833	421832	3080		5	
TSITDMELALPDFFK	1	Unmodified	1726.8488	0.84877424	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.24	102.06	2	0.00063092	88055	160511_QHF_FH_JSI12i_2	87.831	73.673			3.9761	4.5599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9761	4.5599	NaN	1	1	Median	310860000	85982000	224870000	0	0	0	0	0	0	0	0	0	310860000	85982000	224870000	51909	561	48883	313437	421834	421834			1	
TSIVQAAAGGVPGGGSNNGK	1	Unmodified	1740.8755	0.87547477	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		45.836	45.432	2	0.00019753	41074	160511_QHF_FH_JSI11i_1	64.394	54.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51910	4937	48884	313438	421835	421835			1	
TSIWDETLYK	1	Unmodified	1254.6132	0.61321864	3228	Q7L523;Q5VZM2	RRAGA;RRAGB	Ras-related GTP-binding protein A;Ras-related GTP-binding protein B	yes	no	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	70.181	69.924	2	0.00047528	60001	160511_QHF_FH_JSI12i_2	84.213	64.942			0.81863	0.95296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81863	0.95296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39658000	21458000	18201000	0	0	0	39658000	21458000	18201000	0	0	0	0	0	0	51911	3228	48885	313439;313440	421836;421837	421836			2	
TSLAALEQIQTAK	1	Unmodified	1372.7562	0.75619449	2841	Q4V328	GRIPAP1	GRIP1-associated protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	63.031	62.106	2	6.916E-06	54083	160511_QHF_FH_JSI11i_2	124.39	99.341			0.99625	1.0981	9.7218	3	1	Median	1.3527	1.2092	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99366	0.99552	NaN	1	0	Median	0.99625	1.0981	NaN	1	0	Median	152320000	51493000	100830000	36459000	11757000	24702000	0	0	0	56781000	16861000	39920000	59084000	22875000	36209000	51912	2841	48886	313441;313442;313443	421838;421839;421840;421841	421841			3	
TSLAQQLQR	0	Acetyl (Protein N-term)	1085.5829	0.58292157	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	1	0	0				By MS/MS	1	0	1												1	53.107	52.443	2	9.7886E-05	47644	160511_QHF_FH_JSI12i_1	91.9	67.049			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51913	4733	48887	313444	421842	421842			1	
TSLATILDGGEENLEK	1	Unmodified	1688.8469	0.84685999	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	83.571	82.968	2	0.00019444	72914	160511_QHF_FH_JSI11i_2	89.231	64.887			1.2824	1.2765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2824	1.2765	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30425000	15507000	14918000	0	0	0	0	0	0	30425000	15507000	14918000	0	0	0	51914	3440	48888	313445;313446	421843;421844;421845	421844			3	
TSLDIEEYSDTEVQK	1	Unmodified	1755.8051	0.80505475	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	58.633	57.975	2	5.4604E-27	52729	160511_QHF_FH_JSI12i_1	147.24	130.71			0.88164	0.91205	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88164	0.91205	NaN	1	1	Median	30777000	17847000	12931000	0	0	0	0	0	0	0	0	0	30777000	17847000	12931000	51915	1742	48889	313447;313448;313449	421846;421847;421848	421847			3	
TSLDPSLEIYKK	2	Unmodified	1392.75	0.75004648	4742	Q9H6E4	CCDC134	Coiled-coil domain-containing protein 134	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	54.344	52.967	3	0.028291	45344	160511_QHF_FH_JSI12i_2	33.317	28.238			2.0095	2.1307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0095	2.1307	NaN	1	1	Median	23363000	9272700	14090000	0	0	0	0	0	0	0	0	0	23363000	9272700	14090000	51916	4742	48890	313450	421849	421849			1	
TSLDWWITDK	1	Unmodified	1263.6136	0.61355299	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	82.86	82.206	2	0.00063586	72606	160511_QHF_FH_JSI9i_2	85.807	51.621			0.38668	0.3956	17.401	2	2	Median	0.40108	0.3498	NaN	1	1	Median	0.37279	0.44739	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132640000	100350000	32292000	57812000	42763000	15048000	74830000	57587000	17243000	0	0	0	0	0	0	51917	2489	48891	313451;313452;313453	421850;421851;421852	421851			3	
TSLEASMEASPK	1	Unmodified	1249.586	0.58601761	3419	Q8IWC1	MAP7D3	MAP7 domain-containing protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	35.05	34.58	2	0.0011152	31372	160511_QHF_FH_JSI12i_1	67.548	53.728			1.2461	1.3296	83.83	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65501	0.735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.3705	2.4052	NaN	1	1	Median	36496000	17352000	19144000	0	0	0	18288000	11322000	6965400	0	0	0	18208000	6029500	12179000	51918	3419	48892	313454;313455;313456	421853;421854;421855	421854			3	
TSLELWMHTDPVSQK	1	Unmodified	1770.8611	0.86107026	3840	Q92542	NCSTN	Nicastrin	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	68.605	68.307	2;3	0.0031382	59081	160511_QHF_FH_JSI12i_2	57.019	45.153			1.9413	2.0307	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9413	2.0307	NaN	1	1	Median	37924000	14028000	23896000	0	0	0	0	0	0	0	0	0	37924000	14028000	23896000	51919	3840	48893	313457;313458	421856;421857	421856			2	
TSLEVSLLEK	1	Unmodified	1117.6231	0.62305505	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	67.123	65.823	2	0.0013043	56543	160511_QHF_FH_JSI12i_2	77.662	27.622			0.7484	0.84642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7484	0.84642	NaN	1	1	Median	50617000	28940000	21677000	0	0	0	0	0	0	0	0	0	50617000	28940000	21677000	51920	696	48894	313459	421858	421858			1	
TSLGNVVLLLK	1	Unmodified	1155.7227	0.72270951	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	90.912	90.351	2	1.195E-23	78469	160511_QHF_FH_JSI12i_3	180.67	143.98			0.90649	0.93255	9.9401	4	0	Median	1.1189	0.92822	NaN	1	0	Median	0.88895	1.0798	NaN	1	0	Median	0.903	0.84903	NaN	1	0	Median	0.90999	0.93691	NaN	1	0	Median	600190000	298810000	301380000	71765000	30675000	41090000	87384000	39747000	47636000	121490000	62051000	59436000	319560000	166330000	153220000	51921	398	48895	313460;313461;313462;313463;313464	421859;421860;421861;421862;421863;421864;421865;421866	421865			8	
TSLGPKGMDK	2	Acetyl (K)	1074.5379	0.53794521	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		40.627	30.7	2	0.0069644	18706	160513_QHF_FH_JSI11Kac_4	62.823	7.8412			0.49504	0.48295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49504	0.48295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7482400	4747600	2734900	0	0	0	0	0	0	7482400	4747600	2734900	0	0	0	51922	1722	48896	313465	421867;421868	421868	1743		2	
TSLGPNGLDK	1	Unmodified	1000.5189	0.51892433	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.5	4	4	1			2	2			3	2	4	4	34.729	31.266	2	1.0089E-05	27672	160511_QHF_FH_JSI9i_1	120.99	72.427			1.0368	1.0594	36.677	13	6	Median	0.86203	0.71384	43.296	3	2	Plateau	0.87469	1.0494	2.4514	2	1	Median	1.0116	0.99731	5.9075	4	0	Median	1.1823	1.2797	51.579	4	3	Median	3787000000	1978600000	1808500000	906010000	445160000	460850000	1043400000	626300000	417060000	921810000	463340000	458470000	915830000	443750000	472080000	51923	1630	48897	313466;313467;313468;313469;313470;313471;313472;313473;313474;313475;313476;313477;313478	421869;421870;421871;421872;421873;421874;421875;421876;421877;421878;421879;421880;421881;421882;421883;421884;421885;421886	421882			18	
TSLGSGFGSPSVTDPRPLNPSAYSSTTLPAAR	0	Unmodified	3190.5895	0.58947009	4285	Q99569	PKP4	Plakophilin-4	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				78.473	77.078	3	0.015185	63432	160511_QHF_FH_JSI9i_3	28.405	22.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3413000	0	3413000	3413000	0	3413000	0	0	0	0	0	0	0	0	0	51924	4285	48898	313479	421887	421887			1	
TSLIGMFDSDVNK	1	Unmodified	1425.681	0.68098063	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	82.956	82.076	2	0.00027379	70867	160511_QHF_FH_JSI12i_2	90.653	83.8			0.83261	0.96041	14.576	2	1	Median	NaN	NaN	NaN	0	0	Median	0.8556	1.0647	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81024	0.86636	NaN	1	0	Median	75049000	45245000	29805000	0	0	0	30289000	17146000	13143000	0	0	0	44760000	28099000	16661000	51925	1822	48899	313480;313481	421888;421889	421888			2	
TSLIVHVR	0	Unmodified	923.55525	0.55525025	2626	Q15072	ZNF146	Zinc finger protein OZF	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				39.542	30.483	3	0.030396	16441	160513_QHF_FH_JSI9Kac_6	29.416	15.698			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51926	2626	48900	313482	421890	421890			1	
TSLLLHNSHAFFR	0	Unmodified	1541.8103	0.81029574	4530	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			61.046	52.647	4	0.040583	29042	160513_QHF_FH_JSI10Kac_6	25.542	17.998			0.87968	1.0518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87968	1.0518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19698000	10533000	9165400	0	0	0	19698000	10533000	9165400	0	0	0	0	0	0	51927	4530	48901	313483	421891	421891			0	
TSLLMVYSQGSFPEHYAPSVFEK	1	Unmodified	2616.257	0.25702591	4841	Q9HBH0	RHOF	Rho-related GTP-binding protein RhoF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	91.193	86.855	3	2.4839E-38	43043	160513_QHF_FH_JSI11Kac_6	171.15	157.41			1.027	1.0429	9.5057	8	0	Median	1.1763	0.98779	12.673	2	0	Median	0.85841	0.97755	16.289	2	0	Median	1.0574	0.99097	8.5775	2	0	Median	1.0209	1.0712	5.134	2	0	Median	510190000	244810000	265380000	74330000	35101000	39229000	205070000	97740000	107330000	120060000	56709000	63346000	110730000	55256000	55479000	51928	4841	48902	313484;313485;313486;313487;313488;313489;313490;313491	421892;421893;421894;421895;421896;421897;421898;421899;421900;421901;421902;421903;421904;421905;421906;421907;421908;421909;421910	421898			19	
TSLLTLEDVK	1	Unmodified	1117.6231	0.62305505	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		66.286	65.724	2	0.002027	57335	160511_QHF_FH_JSI11i_2	74.941	12.739			0.64714	0.6528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64714	0.6528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85925000	52603000	33322000	0	0	0	0	0	0	85925000	52603000	33322000	0	0	0	51929	3267	48903	313492	421911	421911			1	
TSLMNQYVNK	1	Unmodified	1196.586	0.58595803	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.38	4	4	4				1	4	2	5	5	4	5	42.598	39.394	2	1.171E-33	34346	160511_QHF_FH_JSI11i_3	226.04	170.37			0.87489	0.86335	20.203	16	0	Median	0.9998	0.84254	32.947	4	0	Median	0.70498	0.86556	14.217	3	0	Median	0.83923	0.82178	23.036	4	0	Median	0.8746	0.90917	12.075	5	0	Median	4706000000	2435100000	2270900000	623000000	325170000	297830000	990600000	542240000	448360000	1561900000	724320000	837540000	1530600000	843350000	687210000	51930	1728	48904	313493;313494;313495;313496;313497;313498;313499;313500;313501;313502;313503;313504;313505;313506;313507;313508;313509;313510;313511	421912;421913;421914;421915;421916;421917;421918;421919;421920;421921;421922;421923;421924;421925;421926;421927;421928;421929;421930;421931;421932;421933;421934;421935;421936;421937;421938;421939	421912			28	
TSLMNQYVNK	1	Oxidation (M)	1212.5809	0.58087266	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	25.194	25.163	2	8.1667E-10	20858	160511_QHF_FH_JSI12i_3	138.98	100.01			0.62643	0.66218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62643	0.66218	NaN	1	0	Median	58351000	33219000	25132000	0	0	0	0	0	0	0	0	0	58351000	33219000	25132000	51931	1728	48904	313512;313513	421940;421941;421942	421941		1417	3	
TSLMNQYVNKK	2	Unmodified	1324.6809	0.68092105	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	31.237	30.432	2;3	8.102E-14	25439	160511_QHF_FH_JSI10i_3	128.01	104.79			0.6144	0.69773	32.56	7	2	Median	0.74899	0.61228	32.974	2	0	Median	0.59609	0.67988	3.6664	2	0	Median	0.92177	0.86199	62.352	2	2	Median	0.77035	0.8089	NaN	1	0	Median	1042700000	538700000	503980000	375940000	186220000	189720000	204120000	135200000	68918000	413840000	189150000	224690000	48789000	28128000	20661000	51932	1728	48905	313514;313515;313516;313517;313518;313519;313520	421943;421944;421945;421946;421947;421948;421949;421950;421951;421952	421947			10	
TSLNILIK	1	Unmodified	900.56442	0.56441796	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	62.012	61.12	2	0.0016104	54166	160511_QHF_FH_JSI10i_2	87.181	45.954			1.0475	1.0406	11.394	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71844	0.8732	NaN	1	0	Median	1.0475	1.0406	NaN	1	0	Median	0.99956	1.0812	NaN	1	0	Median	123490000	68057000	55429000	0	0	0	37300000	20520000	16779000	46459000	28141000	18319000	39727000	19396000	20331000	51933	3173	48906	313521;313522;313523	421953;421954;421955	421955			3	
TSLNNPYIIR	0	Unmodified	1189.6455	0.64552182	2085	P78345	RPP38	Ribonuclease P protein subunit p38	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	51.523	50.564	2	0.017066	43580	160511_QHF_FH_JSI11i_2	66.568	49.328			1.243	1.3103	11.532	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2089	1.2077	NaN	1	0	Median	1.278	1.4216	NaN	1	0	Median	177560000	46945000	130610000	0	0	0	0	0	0	88202000	23871000	64331000	89355000	23074000	66280000	51934	2085	48907	313524;313525	421956;421957	421957			0	
TSLPAWSAAMDAGLEAMQK	1	Unmodified	1976.9336	0.93358328	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2.4	0.49		3	2							1	1	2	1	101.32	101.27	3	1.0172E-06	89754	160511_QHF_FH_JSI10i_2	96.143	79.649			1.0085	0.8859	20.486	5	0	Median	1.0085	0.87207	NaN	1	0	Median	0.71901	0.8859	NaN	1	0	Median	0.88994	0.85208	33.843	2	0	Median	1.1081	1.1174	NaN	1	0	Median	559490000	284970000	274520000	134860000	61136000	73721000	94258000	54315000	39942000	190860000	95472000	95386000	139520000	74043000	65473000	51935	2817	48908	313526;313527;313528;313529;313530	421958;421959	421959			1	
TSLPLSPVK	1	Unmodified	940.55933	0.55933258	3376	Q86XL3	ANKLE2	Ankyrin repeat and LEM domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.331	49.665	2	0.0085188	45126	160511_QHF_FH_JSI12i_1	52.867	35.1			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51936	3376	48909	313531	421960	421960			1	
TSLPWQGLK	1	Unmodified	1028.5655	0.56548059	1633	P48729	CSNK1A1	Casein kinase I isoform alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	3	3	1	62.539	61.824	2	5.1108E-05	54346	160511_QHF_FH_JSI9i_2	109.86	93.086			0.80826	0.79757	43.259	9	3	Median	0.77973	0.65471	65.228	2	1	Median	0.6072	0.70203	34.358	3	1	Median	0.80826	0.79757	47.935	3	1	Median	1.3088	1.3427	NaN	1	0	Median	1371100000	812090000	558970000	207800000	127940000	79859000	345450000	235900000	109550000	531880000	329610000	202260000	285930000	118640000	167300000	51937	1633	48910	313532;313533;313534;313535;313536;313537;313538;313539;313540	421961;421962;421963;421964;421965;421966;421967;421968;421969;421970	421967			9	
TSLSALTQLMK	1	Unmodified	1191.6533	0.65330932	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		82.489	81.624	2	5.9766E-08	68396	160511_QHF_FH_JSI10i_3	125.97	113.38			0.85084	0.95228	44.557	3	1	Plateau	1.1434	0.93707	NaN	1	0	Median	0.85084	0.96521	NaN	1	0	Median	0.46665	0.43976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	414080000	240480000	173600000	108280000	48880000	59401000	108510000	51506000	57002000	197300000	140100000	57198000	0	0	0	51938	104	48911	313541;313542;313543	421971;421972;421973;421974;421975	421972			5	
TSLSANNATLEK	1	Unmodified	1247.6357	0.635745	501	O75330	HMMR	Hyaluronan mediated motility receptor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			29.4	29.075	2	0.0041148	25855	160511_QHF_FH_JSI10i_1	56.548	36.558			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51939	501	48912	313544	421976	421976			1	
TSLSFKSDQVK	2	Acetyl (K)	1280.6612	0.66123147	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.4						1	4				2	1	2	56.273	45.83	2	8.1043E-24	25860	160513_QHF_FH_JSI12Kac_4	181.68	116.97			0.88012	1.0437	355.44	5	3	Median	NaN	NaN	NaN	0	0	Median	0.82543	0.98391	8.3488	2	0	Median	86.134	83.998	NaN	1	1	Median	1.1192	1.2008	594.72	2	2	Median	86972000	40929000	46043000	0	0	0	40363000	22359000	18004000	11367000	104640	11262000	35242000	18464000	16777000	51940	5461	48913	313545;313546;313547;313548;313549	421977;421978;421979;421980;421981;421982	421981	3433		6	
TSLSFLNRPDLPNLAYK	1	Unmodified	1948.0418	0.04181182	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			85.656	84.484	3	0.028307	70683	160511_QHF_FH_JSI10i_3	35.771	25.812			0.78293	0.89779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78293	0.89779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41359000	19871000	21488000	0	0	0	41359000	19871000	21488000	0	0	0	0	0	0	51941	5002	48914	313550	421983	421983			1	
TSLSMFSK	1	Unmodified	899.44225	0.44225391	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	46.121	45.273	2	0.0021479	38688	160511_QHF_FH_JSI12i_3	82.279	34.43			1.1265	1.1386	14.523	7	2	Median	1.374	1.1329	6.0753	2	1	Median	1.0491	1.281	16.667	2	1	Median	0.9641	0.94717	4.4779	2	0	Median	1.1265	1.1475	NaN	1	0	Median	1157400000	554820000	602590000	168010000	69449000	98561000	222080000	119780000	102310000	360180000	174570000	185610000	407140000	191020000	216120000	51942	444	48915	313551;313552;313553;313554;313555;313556;313557	421984;421985;421986;421987;421988;421989;421990;421991;421992;421993	421993			10	
TSLSPGSGMVTHYLSSSGVLPYLSK	1	Unmodified	2567.2941	0.2941397	1617	P48200	IREB2	Iron-responsive element-binding protein 2	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			99.088	98.864	3	1.9137E-06	81708	160511_QHF_FH_JSI10i_3	59.356	51.91			0.90574	0.8825	8.6255	2	0	Median	1.12	0.93801	NaN	1	0	Median	0.73247	0.83029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38217000	22469000	15748000	14902000	7247200	7655000	23315000	15222000	8092800	0	0	0	0	0	0	51943	1617	48916	313558;313559	421994	421994			1	
TSLSQDHDAALMQGYTASVDSTHQEDAPSHPER	0	Unmodified	3580.5761	0.57608123	5607	Q9Y426	C2CD2	C2 domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	87.237	77.854	4	0.054798	43261	160513_QHF_FH_JSI11Kac_6	13.845	4.3828			1.4408	1.4289	47.449	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1251	1.9986	NaN	1	0	Median	0.97687	1.0216	NaN	1	0	Median	1957200000	664670000	1292500000	0	0	0	0	0	0	1907500000	640290000	1267200000	49633000	24381000	25252000	51944	5607	48917	313560;313561	421995	421995			1	
TSLVQLLAHLTGHTLK	1	Unmodified	1731.0043	0.004304102	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			90.425	83.706	3;4	3.2385E-23	47918	160513_QHF_FH_JSI10Kac_6	193.64	173.27			0.6906	0.80921	4.0285	3	3	Median	0.93669	0.80921	NaN	1	1	Median	0.66182	0.78601	5.1785	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239550000	149780000	89773000	45659000	29707000	15951000	193900000	120070000	73822000	0	0	0	0	0	0	51945	4997	48918	313562;313563;313564	421996;421997;421998	421997			3	
TSMCSIQSAPPEPATLK	1	Unmodified	1816.8699	0.86992039	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.306	52.639	2	4.1913E-11	47325	160511_QHF_FH_JSI10i_1	194.86	180.71			1.0328	1.0546	8.3705	4	1	Median	1.2945	1.0805	NaN	1	1	Median	0.88038	1.0293	NaN	1	0	Median	0.95802	0.9491	NaN	1	0	Median	1.1133	1.1581	NaN	1	0	Median	458560000	246590000	211970000	79232000	35111000	44121000	91914000	44676000	47238000	135030000	75728000	59306000	152380000	91078000	61300000	51946	1181	48919	313565;313566;313567;313568	421999;422000;422001;422002;422003;422004;422005;422006;422007;422008	422005			10	
TSMESLIHHFK	1	Unmodified	1328.6547	0.6547063	497	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							2	2	3	5	54.838	54.147	2;3;4	1.9674E-09	45571	160511_QHF_FH_JSI12i_3	127.4	112.73			0.96255	0.98095	39.856	10	1	Median	1.1363	0.93349	36.016	2	0	Median	0.84389	0.97022	15.967	2	0	Median	2.7238	2.5035	68.441	3	0	Plateau	1.244	1.2123	31.696	3	1	Median	820240000	302090000	518150000	113090000	44185000	68902000	84629000	36290000	48340000	181690000	67607000	114080000	440840000	154010000	286830000	51947	497	48920	313569;313570;313571;313572;313573;313574;313575;313576;313577;313578;313579;313580	422009;422010;422011;422012;422013;422014;422015;422016	422015			7	
TSMFPFFDIAHYLVSVMAVK	1	Oxidation (M)	2318.1479	0.14793315	5052	Q9NVV0	TMEM38B	Trimeric intracellular cation channel type B	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	101.2	93.003	3	7.4452E-26	52799	160513_QHF_FH_JSI11Kac_6	153.11	139.09			0.85853	0.91803	21.171	3	1	Median	NaN	NaN	NaN	0	0	Median	0.6527	0.77711	NaN	1	1	Median	1.239	1.1832	NaN	1	0	Median	0.85853	0.91803	NaN	1	0	Median	455000000	266480000	188520000	0	0	0	208840000	141110000	67733000	81979000	36984000	44995000	164180000	88386000	75790000	51948	5052	48921	313581;313582;313583	422017;422018;422019	422018		2577	3	
TSMFPFFDIAHYLVSVMAVK	1	Unmodified	2302.153	0.15301853	5052	Q9NVV0	TMEM38B	Trimeric intracellular cation channel type B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	102.38	94.531	2;3	2.7239E-86	57058	160513_QHF_FH_JSI10Kac_6	246.18	217.97			0.96742	1.0157	17.399	5	1	Median	1.2858	1.1015	11.463	2	1	Median	0.7505	0.87377	22.754	2	0	Median	0.96742	0.92731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1988300000	991160000	997140000	560300000	232810000	327490000	836870000	459070000	377800000	591130000	299290000	291850000	0	0	0	51949	5052	48921	313584;313585;313586;313587;313588;313589	422020;422021;422022;422023;422024;422025;422026;422027	422027			8	
TSMFPSLK	1	Unmodified	909.46299	0.46298935	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	2	0		3								1	1		1	55.101	53.995	2	0.0071248	47349	160511_QHF_FH_JSI9i_2	60.478	33.34			0.88209	1.0821	0.53422	3	0	Plateau	1.2821	1.0821	NaN	1	0	Median	0.88209	1.086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98658	1.0746	NaN	1	0	Median	134280000	67307000	66972000	34534000	13729000	20805000	61788000	33330000	28458000	0	0	0	37956000	20247000	17709000	51950	2712	48922	313590;313591;313592	422028;422029;422030	422029			3	
TSMGGTQQQFVEGVR	0	Unmodified	1623.7675	0.76750423	1422	P35222	CTNNB1	Catenin beta-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			43.466	43.048	2	0.0028209	38608	160511_QHF_FH_JSI10i_1	66.706	49.111			1.2487	1.4483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2487	1.4483	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39221000	15154000	24067000	0	0	0	39221000	15154000	24067000	0	0	0	0	0	0	51951	1422	48923	313593	422031	422031			1	
TSMLSPK	1	Unmodified	762.39458	0.39457544	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	1	2	2	19.025	18.402	2	0.014343	14732	160511_QHF_FH_JSI9i_3	67.032	33.294			0.95767	0.96328	26.538	7	1	Median	0.89684	0.75324	51.618	2	1	Median	0.7852	0.95433	NaN	1	0	Median	1.1105	1.1032	6.4146	2	0	Median	0.87724	0.91777	6.843	2	0	Median	1023600000	523940000	499670000	194140000	92743000	101390000	160160000	88959000	71203000	388950000	190940000	198010000	280360000	151290000	129060000	51952	4212	48924	313594;313595;313596;313597;313598;313599;313600	422032;422033;422034;422035	422033			4	
TSMNVNEIFMAIAK	1	Unmodified	1567.7738	0.77383516	1174	P20339	RAB5A	Ras-related protein Rab-5A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	91.2	85.48	2	0.00046885	48723	160513_QHF_FH_JSI10Kac_6	103.44	20.125			1.013	1.1586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.013	1.1586	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59774000	31659000	28115000	0	0	0	59774000	31659000	28115000	0	0	0	0	0	0	51953	1174	48925	313601;313602	422036;422037	422037			2	
TSMTEEYRVPDGMVGLIIGR	0	Unmodified	2223.1028	0.10277387	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	4	1	91.272	88.473	3	3.2653E-14	83069	160511_QHF_FH_JSI10i_2	147.64	138.35			1.051	1.0614	5.8011	9	2	Median	1.3473	1.1579	1.6288	2	0	Median	0.85976	1.0342	3.6741	2	0	Median	1.0877	1.0465	3.0682	4	2	Median	1.0316	1.1413	NaN	1	0	Median	894250000	408570000	485680000	178050000	76184000	101870000	283130000	149540000	133590000	412390000	175270000	237120000	20672000	7582500	13089000	51954	3911	48926	313603;313604;313605;313606;313607;313608;313609;313610;313611	422038;422039;422040;422041;422042;422043;422044;422045;422046;422047;422048	422045			11	
TSMTQSLR	0	Acetyl (Protein N-term)	964.46478	0.46478027	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.017	35.409	2	0.00020844	31639	160511_QHF_FH_JSI10i_1	121.99	59.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51955	4905	48927	313612;313613;313614;313615	422049;422050;422051;422052	422051			4	
TSMTQSLR	0	Acetyl (Protein N-term);Oxidation (M)	980.45969	0.45969489	4905	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	yes	yes	0	1	1	0	By MS/MS			By MS/MS	6.25	5.26	2			1	1					1			3	36.295	35.383	2	0.018386	31124	160511_QHF_FH_JSI9i_1	44.447	33.079			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51956	4905	48927	313616;313617;313618;313619	422053;422054;422055;422056	422054		2550	4	
TSNEHLQK	1	Unmodified	955.47231	0.47230849	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.48		7						6		2	3	4	4	5.0217	0.85393	2;3	1.015E-05	2335	160511_QHF_FH_JSI9i_2	140.5	116.53			1.012	1.0903	23.621	12	0	Median	1.464	1.2407	NaN	1	0	Median	0.85739	1.0656	23.393	3	0	Plateau	1.0005	1.0304	26.226	4	0	Median	1.1872	1.3465	13.862	4	0	Median	2163400000	1068300000	1095100000	116970000	50130000	66841000	533480000	276830000	256650000	1007700000	486750000	520970000	505250000	254560000	250690000	51957	1016	48928	313620;313621;313622;313623;313624;313625;313626;313627;313628;313629;313630;313631;313632	422057;422058;422059;422060;422061;422062;422063;422064;422065;422066;422067;422068;422069;422070	422062			14	
TSNEHLQKHVEDLLTK	2	Acetyl (K)	1932.9905	0.99050453	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		59.726	50.008	4	0.010488	26965	160513_QHF_FH_JSI11Kac_6	47.09	38.271			0.10897	0.10364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10897	0.10364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	9706100	8521900	1184200	0	0	0	0	0	0	9706100	8521900	1184200	0	0	0	51958	1016	48929	313633	422071	422071	827		1	
TSNEVQYDQR	0	Unmodified	1238.5527	0.55274365	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	12.823	10.089	2	1.2084E-33	8689	160511_QHF_FH_JSI10i_1	198.72	162.32			1.0014	1.025	6.6467	6	0	Median	1.1388	0.9377	NaN	1	0	Median	0.90177	1.025	2.0415	2	0	Median	1.1294	1.0908	6.3279	2	0	Median	0.92087	0.97997	NaN	1	0	Median	368390000	170360000	198030000	71390000	30225000	41165000	108490000	53624000	54870000	97088000	44231000	52857000	91418000	42277000	49141000	51959	2443	48930	313634;313635;313636;313637;313638;313639	422072;422073;422074;422075;422076;422077;422078;422079	422077			8	
TSNEVTVETDKK	2	Unmodified	1349.6674	0.66743906	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			11.401	11.165	3	0.018325	8944	160511_QHF_FH_JSI10i_1	37.594	22.392			0.55229	0.64715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55229	0.64715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56486000	34454000	22032000	0	0	0	56486000	34454000	22032000	0	0	0	0	0	0	51960	4975	48931	313640	422080	422080			1	
TSNFVPSSANMQYQGQQMK	1	Unmodified	2144.9619	0.96192329	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	52.269	51.603	2	0.00046507	46884	160511_QHF_FH_JSI12i_1	74.46	61.693			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9627000	0	9627000	0	0	0	0	0	0	0	0	0	9627000	0	9627000	51961	4059	48932	313641;313642	422081;422082	422081			2	
TSNGDLSDSTVSADPVVK	1	Unmodified	1790.8534	0.85340193	2793	Q2M389	KIAA1033	WASH complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.879	42.952	2	1.6377E-06	39006	160511_QHF_FH_JSI12i_1	108.71	92.081			1.0615	0.96607	57.079	2	2	Median	0.79108	0.64525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4243	1.4464	NaN	1	1	Median	39832000	21559000	18273000	21545000	14266000	7279500	0	0	0	0	0	0	18287000	7293600	10994000	51962	2793	48933	313643;313644;313645;313646	422083;422084;422085;422086	422084			4	
TSNGHQSKSMLK	2	Acetyl (K)	1358.6612	0.66124824	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			16.804	9.9673	3	0.048407	6605	160513_QHF_FH_JSI10Kac_6	34.179	29.025			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1841600	1841600	0	0	0	0	1841600	1841600	0	0	0	0	0	0	0	51963	5294	48934	313647	422087	422087			1	
TSNHAIVLAQLITK	1	Unmodified	1507.8722	0.8722273	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	4	4	3	2	70.322	65.206	2;3	1.6769E-24	35592	160513_QHF_FH_JSI10Kac_6	130.06	123.15			0.95975	0.93769	14.341	13	1	Median	1.061	0.97852	20.863	4	0	Linear	0.78653	0.90985	7.8266	4	1	Median	1.1424	1.1079	10.462	3	0	Median	0.88826	0.9162	2.9685	2	0	Median	1244800000	629270000	615490000	325620000	142770000	182850000	417090000	231270000	185820000	293770000	140120000	153650000	208280000	115110000	93172000	51964	2624	48935	313648;313649;313650;313651;313652;313653;313654;313655;313656;313657;313658;313659;313660	422088;422089;422090;422091;422092;422093;422094;422095;422096;422097;422098;422099;422100;422101;422102;422103;422104;422105;422106;422107;422108;422109;422110;422111;422112	422111			25	
TSNLHYLLFTILEDSLYK	1	Unmodified	2169.1358	0.13577179	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.885	90.472	3	1.8129E-17	53688	160513_QHF_FH_JSI10Kac_6	140.95	115.76			0.85974	0.87828	13.16	2	1	Median	0.91412	0.80024	NaN	1	1	Median	0.80859	0.96393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234560000	133960000	100600000	77392000	40698000	36694000	157170000	93261000	63907000	0	0	0	0	0	0	51965	5353	48936	313661;313662	422113;422114	422114			2	
TSNLLLSHAGILK	1	Unmodified	1365.798	0.79799972	1187	P21127;Q9UQ88	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	2	2	2	62.132	60.435	2;3	2.8399E-05	51816	160511_QHF_FH_JSI12i_3	75.911	63.529			0.95692	0.98904	9.1349	9	0	Median	1.2883	1.0523	3.9285	3	0	Plateau	0.84194	0.96822	3.5127	2	0	Median	0.94921	0.90178	15.517	2	0	Median	0.887	0.89961	11.599	2	0	Median	1041900000	518390000	523540000	149790000	57967000	91821000	154870000	82402000	72467000	255470000	125170000	130290000	481810000	252850000	228960000	51966	1187	48937	313663;313664;313665;313666;313667;313668;313669;313670;313671	422115;422116;422117;422118;422119;422120	422120			6	
TSNPLVLEEASASQAGSRK	1	Unmodified	1943.9912	0.99123281	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.2	0.4		4	1							1	1	3		44.715	44.087	3	1.4573E-08	38782	160511_QHF_FH_JSI10i_2	109.5	100.9			0.86012	0.94403	22.179	4	2	Median	1.3614	1.176	NaN	1	0	Median	0.8982	1.0857	NaN	1	0	Median	0.80861	0.77854	7.4767	2	2	Median	NaN	NaN	NaN	0	0	Median	378750000	196170000	182570000	79362000	31743000	47619000	143670000	76344000	67329000	155710000	88084000	67626000	0	0	0	51967	5014	48938	313672;313673;313674;313675;313676	422121;422122;422123;422124;422125;422126;422127	422126			7	
TSNSLTEDSK	1	Unmodified	1080.4935	0.49349744	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.756	8.4053	2	2.0275E-07	6101	160511_QHF_FH_JSI11i_1	117.02	91.885			0.87939	0.91487	10.221	4	0	Median	1.3062	1.0722	NaN	1	0	Median	0.79219	0.95678	NaN	1	0	Median	0.92261	0.85667	NaN	1	0	Median	0.8382	0.87479	NaN	1	0	Median	294990000	156740000	138260000	70542000	34710000	35831000	79693000	47381000	32311000	68787000	32521000	36266000	75973000	42124000	33849000	51968	2320	48939	313677;313678;313679;313680	422128;422129;422130;422131;422132;422133;422134	422128			7	
TSPADHGGSVGSESGGSAVDSVAGEHSVSGR	0	Unmodified	2839.2605	0.26048439	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							1	2	3		32.656	32.179	3;4	1.034E-27	27828	160511_QHF_FH_JSI9i_2	121.49	119.12			1.1035	1.006	29.545	5	2	Median	1.1862	1.006	NaN	1	0	Median	0.53174	0.62668	NaN	1	1	Median	0.92847	0.86462	24.464	3	1	Plateau	NaN	NaN	NaN	0	0	Median	276460000	126260000	150200000	116550000	47241000	69305000	16210000	10285000	5925900	143700000	68737000	74967000	0	0	0	51969	2947	48940	313681;313682;313683;313684;313685;313686	422135;422136;422137;422138;422139;422140;422141;422142;422143;422144	422140			10	
TSPASLDFPESQK	1	Unmodified	1405.6725	0.67252444	4143	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.384	48.703	2	0.0001582	44013	160511_QHF_FH_JSI11i_1	107.06	81.838			0.74529	0.32943	53.714	4	4	Linear	0.35524	0.29673	NaN	1	1	Median	0.30351	0.35606	NaN	1	1	Median	0.31172	0.30479	NaN	1	1	Median	0.89924	0.9203	NaN	1	1	Median	323740000	222830000	100900000	95898000	67328000	28569000	72848000	58423000	14425000	85651000	64982000	20669000	69341000	32100000	37241000	51970	4143	48941	313687;313688;313689;313690	422145;422146;422147;422148;422149;422150	422146			6	
TSPDAFVQLALQLAHYK	1	Unmodified	1901.0047	0.0046980325	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	102.05	102.02	3	3.7301E-23	91133	160511_QHF_FH_JSI11i_3	180.62	174.78			1.6886	1.6793	75.651	3	2	Plateau	0.73126	0.62169	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0716	1.0256	NaN	1	0	Median	2.6607	2.7497	NaN	1	1	Median	929110000	388600000	540510000	158780000	89595000	69185000	0	0	0	297930000	143480000	154460000	472390000	155530000	316860000	51971	1704	48942	313691;313692;313693	422151;422152;422153;422154	422151			4	
TSPDLVPMGDWTSR	0	Unmodified	1560.7242	0.72424243	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	2	3	73.398	72.712	2	0.00043652	66033	160511_QHF_FH_JSI11i_1	87.363	81.123			1.1766	1.1927	15.574	8	3	Median	1.433	1.2108	27.124	2	1	Median	0.94954	1.1242	21.401	2	0	Median	1.113	1.1047	4.0982	2	0	Median	1.2455	1.3268	8.323	2	2	Median	236660000	108960000	127700000	52222000	22993000	29229000	61165000	36961000	24204000	72901000	29734000	43167000	50369000	19273000	31096000	51972	635	48943	313694;313695;313696;313697;313698;313699;313700;313701;313702	422155;422156;422157;422158;422159;422160;422161;422162;422163;422164	422155			9	
TSPDTLR	0	Unmodified	788.40283	0.40283194	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.2	0.4	4	1								2	1	1	1	12.781	12.312	2	0.017903	10134	160511_QHF_FH_JSI12i_1	60.76	23.114			1.0166	0.98442	7.9245	5	0	Median	1.0643	0.90187	0.41506	2	0	Median	0.92465	1.0813	NaN	1	0	Median	1.0166	0.98442	NaN	1	0	Median	0.97641	1.0212	NaN	1	0	Median	1034200000	514700000	519520000	275770000	128520000	147260000	237780000	124010000	113770000	282060000	143270000	138790000	238600000	118900000	119700000	51973	2165	48944	313703;313704;313705;313706;313707	422165;422166;422167;422168	422166			4	
TSPDTLRR	0	Unmodified	944.50394	0.50394297	2165	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							4	4	2	3	9.9279	9.5164	2;3	0.0002554	7216	160511_QHF_FH_JSI10i_3	84.498	56.293			0.91066	1.2401	27.702	13	3	Linear	1.4516	1.2067	33.297	4	2	Linear	0.95869	1.1357	31.917	4	1	Linear	0.9208	0.9178	0.8393	2	0	Median	1.1684	1.1716	36.39	3	0	Plateau	2839000000	1468100000	1371000000	1319600000	626130000	693430000	1032600000	586700000	445870000	316230000	173570000	142660000	170680000	81689000	88995000	51974	2165	48945	313708;313709;313710;313711;313712;313713;313714;313715;313716;313717;313718;313719;313720	422169;422170;422171;422172;422173;422174;422175;422176;422177;422178;422179;422180	422169			12	
TSPEIASLSWGQMK	1	Acetyl (Protein N-term)	1575.7603	0.76029359	4764	Q9H7C9	AAMDC	Mth938 domain-containing protein	yes	yes	0	1	0	0	By MS/MS	By MS/MS			1	0	2									1	1			88.135	87.667	2	6.7148E-05	77888	160511_QHF_FH_JSI9i_1	68.069	51.043			0.79344	0.76405	2.7269	2	1	Median	0.95532	0.77893	NaN	1	0	Median	0.659	0.74946	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38682000	23590000	15092000	16634000	9137900	7496200	22048000	14452000	7595600	0	0	0	0	0	0	51975	4764	48946	313721;313722	422181;422182	422182			2	
TSPEMDIQNPDDGAR	0	Unmodified	1644.705	0.70496355	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	38.59	37.971	2	1.0528E-07	34001	160511_QHF_FH_JSI10i_1	101.6	94.897			0.64041	0.7082	48.233	4	3	Median	0.55868	0.47674	NaN	1	1	Median	0.55322	0.64394	NaN	1	1	Median	1.5439	1.4903	NaN	1	0	Median	0.7341	0.77887	NaN	1	1	Median	183180000	94919000	88264000	28386000	19108000	9277600	39728000	23855000	15873000	77504000	29871000	47633000	37565000	22085000	15480000	51976	1576	48947	313723;313724;313725;313726;313727;313728;313729	422183;422184;422185;422186;422187;422188;422189;422190	422188			8	
TSPENVQDR	0	Unmodified	1044.4836	0.48360145	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.394	9.6051	2	0.039601	7095	160511_QHF_FH_JSI9i_1	38.086	15.067			1.512	1.2304	NaN	1	0	Median	1.512	1.2304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83601000	32750000	50851000	83601000	32750000	50851000	0	0	0	0	0	0	0	0	0	51977	1685	48948	313730	422191	422191			1	
TSPFELYQFFVR	0	Unmodified	1532.7664	0.76636524	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4	2	3	2	3	99.838	96.437	2	5.1017E-78	91202	160511_QHF_FH_JSI11i_3	243.65	196.47			1.0571	1.1441	6.9056	10	4	Median	1.4622	1.2086	5.3994	2	0	Median	0.96055	1.1423	7.0042	3	1	Median	1.1906	1.1247	7.104	2	1	Median	1.0231	1.0609	6.2391	3	2	Median	2622300000	1306700000	1315600000	277260000	127180000	150080000	487120000	252630000	234490000	561520000	258430000	303090000	1296400000	668440000	627960000	51978	5549	48949	313731;313732;313733;313734;313735;313736;313737;313738;313739;313740	422192;422193;422194;422195;422196;422197;422198;422199;422200;422201;422202;422203	422192			12	
TSPGRVDLPGSSTTLTK	1	Unmodified	1715.9054	0.90537792	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			45.132	43.577	3	0.034968	36300	160511_QHF_FH_JSI10i_3	34.395	17.326			0.35916	0.41444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.35916	0.41444	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67466000	55899000	11567000	0	0	0	67466000	55899000	11567000	0	0	0	0	0	0	51979	616	48950	313741	422204	422204			1	
TSPNEGLSGNPADLER	0	Unmodified	1655.7751	0.77509203	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	43.44	42.671	2	4.8364E-05	38741	160511_QHF_FH_JSI12i_1	106.58	69.466			1.1318	1.1063	16.79	5	3	Median	1.2957	1.0593	24.324	2	2	Median	0.81013	0.96474	NaN	1	0	Median	1.1318	1.1063	NaN	1	0	Median	1.2806	1.3212	NaN	1	1	Median	301860000	150290000	151570000	85938000	39153000	46785000	75875000	44440000	31435000	85963000	40030000	45933000	54083000	26662000	27421000	51980	1168	48951	313742;313743;313744;313745;313746	422205;422206;422207;422208;422209;422210	422207			6	
TSPNEGLSGNPADLERR	0	Unmodified	1811.8762	0.87620306	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	2	4	37.584	36.899	2;3	1.2481E-06	31484	160511_QHF_FH_JSI12i_3	101.05	68.239			1.1301	1.1314	16.332	8	0	Median	1.1269	0.96083	NaN	1	0	Median	0.75897	0.94303	NaN	1	0	Median	1.1564	1.1142	14.687	2	0	Median	1.1468	1.1786	14.846	4	0	Median	840720000	391220000	449500000	115560000	47177000	68381000	176720000	80209000	96510000	233710000	106910000	126800000	314730000	156920000	157810000	51981	1168	48952	313747;313748;313749;313750;313751;313752;313753;313754	422211;422212;422213;422214;422215;422216;422217;422218;422219;422220;422221;422222;422223	422222			13	
TSPQEGER	0	Unmodified	902.40937	0.40937388	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	5.4565	2.8345	2	0.0030985	3010	160511_QHF_FH_JSI12i_1	75.109	55.622			0.91545	0.9385	17.962	6	2	Median	1.1111	0.91958	NaN	1	0	Median	0.8051	0.95781	NaN	1	0	Median	1.0505	1.0328	0.56976	2	1	Median	0.67294	0.71675	13.015	2	1	Median	2145700000	1150400000	995300000	539340000	260320000	279020000	572290000	313260000	259030000	486750000	243120000	243630000	547330000	333710000	213620000	51982	2094	48953	313755;313756;313757;313758;313759;313760;313761	422224;422225;422226;422227;422228;422229;422230;422231	422225			8	
TSPQEGERYNYSK	1	Unmodified	1557.7059	0.70594983	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.198	15.261	3	0.0052598	12063	160511_QHF_FH_JSI12i_3	45.115	30.762			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51983	2094	48954	313762	422232	422232			1	
TSPSGGTWSSVVSGVPR	0	Unmodified	1659.8216	0.82164829	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			62.695	61.177	2	0.00068688	53941	160511_QHF_FH_JSI9i_2	79.633	54.196			0.8285	0.94241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8285	0.94241	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13471000	7502400	5968700	0	0	0	13471000	7502400	5968700	0	0	0	0	0	0	51984	4302	48955	313763;313764	422233;422234	422234			2	
TSPSGKPATLK	2	Unmodified	1085.6081	0.60807369	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.94	4.28	2	5	8					1	1	6	5	4	2	11.337	10.037	2;3	1.6353E-05	7687	160511_QHF_FH_JSI12i_3	112.36	88.564			1.0794	1.0476	30.691	17	2	Median	1.8757	1.5376	32.147	6	2	Median	0.8415	0.98758	16.238	5	0	Median	1.0142	0.97437	12.775	4	0	Median	0.90161	0.9158	23.793	2	0	Median	10920000000	5468900000	5451500000	1599900000	621020000	978890000	2238500000	1139300000	1099300000	2339900000	1051800000	1288000000	4742100000	2656800000	2085400000	51985	1294	48956	313765;313766;313767;313768;313769;313770;313771;313772;313773;313774;313775;313776;313777;313778;313779;313780;313781	422235;422236;422237;422238;422239;422240;422241;422242;422243;422244;422245;422246;422247;422248;422249;422250;422251;422252;422253;422254;422255;422256;422257;422258;422259	422259			25	
TSPSSPAPLPHQEATPR	0	Unmodified	1771.8853	0.88531118	820	P04920	SLC4A2	Anion exchange protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	29.943	28.634	3	0.018496	24135	160511_QHF_FH_JSI12i_2	38.977	28.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51986	820	48957	313782	422260	422260			1	
TSPTPPESATTVK	1	Unmodified	1314.6667	0.66671078	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				25.856	24.612	2	0.016532	21208	160511_QHF_FH_JSI9i_1	51.092	33.656			2.0272	1.6584	NaN	1	1	Median	2.0272	1.6584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15392000	6457000	8935200	15392000	6457000	8935200	0	0	0	0	0	0	0	0	0	51987	2911	48958	313783	422261	422261			1	
TSPVADAAGWVDVDK	1	Unmodified	1529.7362	0.73618733	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	69.381	68.777	2;3	6.6675E-08	62243	160511_QHF_FH_JSI10i_1	98.368	73.577			1.07	1.1076	6.7624	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.07	1.1076	6.7624	2	1	Median	79860000	40434000	39426000	0	0	0	0	0	0	0	0	0	79860000	40434000	39426000	51988	5743	48959	313784;313785;313786;313787	422262;422263;422264;422265;422266;422267	422266			6	
TSPVAIFNGHQNSTFYVK	1	Unmodified	2009.0007	0.0006752871	5154	Q9NZJ0	DTL	Denticleless protein homolog	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			69.892	68.421	3	0.00010857	57408	160511_QHF_FH_JSI10i_3	79.013	68.914			0.62595	0.73036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62595	0.73036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62606000	30386000	32220000	0	0	0	62606000	30386000	32220000	0	0	0	0	0	0	51989	5154	48960	313788	422268	422268			1	
TSPVEGLSGNPADLEK	1	Unmodified	1612.7944	0.79443049	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.396	56.744	2	2.9936E-30	51213	160511_QHF_FH_JSI10i_1	192.65	146.49			1.1065	1.0377	19.121	4	0	Median	1.0808	0.88797	NaN	1	0	Median	0.8182	0.95896	NaN	1	0	Median	1.1328	1.123	NaN	1	0	Median	1.3215	1.3686	NaN	1	0	Median	428620000	206600000	222020000	109020000	52199000	56822000	114300000	64363000	49934000	102520000	40401000	62122000	102770000	49637000	53138000	51990	1239	48961	313789;313790;313791;313792	422269;422270;422271;422272;422273	422272			5	
TSPVTAR	0	Unmodified	730.39735	0.39735263	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6	5.66		2					1				1	2		8.7967	8.4608	2	0.010636	6382	160511_QHF_FH_JSI10i_2	73.975	36.946			0.7485	0.83768	0.037929	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68389	0.8379	NaN	1	0	Median	0.81921	0.83745	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	449120000	241920000	207200000	0	0	0	162290000	93235000	69059000	286830000	148690000	138140000	0	0	0	51991	1254	48962	313793;313794;313795	422274;422275;422276	422276			3	
TSPVTASDPAGPSYAAATLQASSAASSASPVSR	0	Unmodified	3062.4793	0.47925094	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			70.572	70.338	3	4.3172E-11	63792	160511_QHF_FH_JSI10i_1	71.068	62.1			0.75035	0.83413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75035	0.83413	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19869000	12644000	7224200	0	0	0	19869000	12644000	7224200	0	0	0	0	0	0	51992	1150	48963	313796	422277	422277			1	
TSPVVSGSSSK	1	Unmodified	1034.5244	0.52440364	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.62	10.372	2	0.03809	8002	160511_QHF_FH_JSI11i_1	52.278	22.024			0.61866	0.67001	10.926	3	0	Median	NaN	NaN	NaN	0	0	Median	0.56716	0.67001	NaN	1	0	Median	0.61866	0.59051	NaN	1	0	Median	0.69626	0.73404	NaN	1	0	Median	116540000	76009000	40528000	0	0	0	42887000	28792000	14095000	32841000	22159000	10683000	40809000	25059000	15750000	51993	2928	48964	313797;313798;313799	422278;422279;422280	422278			0	
TSPWDPK	1	Unmodified	829.39702	0.39701828	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	1	0	3										1	1	1	29.353	28.984	2	0.042081	25946	160511_QHF_FH_JSI12i_1	46.351	46.351			0.83821	0.99643	27.381	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83821	0.99643	NaN	1	0	Median	0.70845	0.68536	NaN	1	0	Median	1.1448	1.1683	NaN	1	0	Median	187030000	93284000	93741000	0	0	0	59804000	29176000	30628000	61119000	32799000	28319000	66103000	31309000	34794000	51994	2795	48965	313800;313801;313802	422281	422281			1	
TSPYDHMLPGAEHFAEYAGR	0	Unmodified	2248.0008	0.0007516416	1256	P25325	MPST	3-mercaptopyruvate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		67.5	66.924	3;4	0.0041668	59196	160511_QHF_FH_JSI9i_2	49.865	40.174			1.0053	0.84603	26.179	4	2	Linear	1.5586	1.3257	NaN	1	1	Median	1.0878	1.3385	NaN	1	1	Median	0.87566	0.84793	3.9095	2	0	Median	NaN	NaN	NaN	0	0	Median	149940000	68283000	81660000	24855000	7241300	17613000	33737000	17233000	16504000	91350000	43808000	47542000	0	0	0	51995	1256	48966	313803;313804;313805;313806	422282;422283;422284;422285	422283			4	
TSPYPVILSFENHVDSAK	1	Unmodified	2003	6.5851E-06	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	0			By MS/MS		2.5	0.5		1	1									2		82.697	82.084	3	0.022007	72833	160511_QHF_FH_JSI11i_3	31.138	15.015			1.3745	1.407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3745	1.407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21131000	12464000	8667600	0	0	0	0	0	0	21131000	12464000	8667600	0	0	0	51996	2180	48967	313807;313808	422286;422287	422286			2	
TSQDYQALTVHDNLAMK	1	Unmodified	1933.9204	0.92037606	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.986	51.01	3	1.2777E-11	43650	160511_QHF_FH_JSI12i_2	127.49	118.89			0.95656	1.0094	5.584	4	0	Median	1.1049	0.96157	NaN	1	0	Median	0.87648	1.0652	NaN	1	0	Median	0.97288	0.96464	NaN	1	0	Median	0.94051	1.0562	NaN	1	0	Median	570850000	292230000	278630000	105370000	52525000	52846000	122200000	70535000	51668000	213000000	98565000	114440000	130280000	70602000	59676000	51997	4337	48968	313809;313810;313811;313812	422288;422289;422290;422291;422292;422293;422294;422295;422296;422297	422289			10	
TSQEELLAEVVQGQSR	0	Unmodified	1772.8905	0.89045614	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	5									2		1	2	74.831	74.16	2;3	0.0001011	67577	160511_QHF_FH_JSI12i_1	118.52	87.694			0.58639	0.63113	41.518	3	3	Plateau	1.5248	1.2416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65788	0.69043	33.933	2	2	Median	58796000	33331000	25466000	16400000	5913900	10486000	0	0	0	0	0	0	42397000	27417000	14980000	51998	3128	48969	313813;313814;313815;313816;313817	422298;422299;422300;422301;422302	422300			5	
TSQEGPGDSVK	1	Unmodified	1103.5095	0.50948185	4985	Q9NSK0	KLC4	Kinesin light chain 4	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	8.4381	8.0509	2	0.00072582	5603	160511_QHF_FH_JSI9i_1	68.893	52.117			1.3283	1.1189	18.637	3	0	Plateau	1.3283	1.1189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94735	0.90331	NaN	1	0	Median	0.76248	0.77188	NaN	1	0	Median	95051000	48242000	46809000	36572000	14318000	22254000	0	0	0	29907000	15728000	14179000	28571000	18196000	10375000	51999	4985	48970	313818;313819;313820	422303;422304	422304			2	
TSQENISFETMYDVLSTKPVLNK	2	Unmodified	2643.3102	0.31018369	2431	Q13510	ASAH1	Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.72	100.74	3	3.6327E-26	87352	160511_QHF_FH_JSI12i_3	184.96	173.32			1.1218	1.1123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1218	1.1123	NaN	1	1	Median	76651000	45170000	31481000	0	0	0	0	0	0	0	0	0	76651000	45170000	31481000	52000	2431	48971	313821	422305	422305			1	
TSQETADVK	1	Unmodified	977.46655	0.46655441	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.7145	6.3788	2	3.1547E-11	4311	160511_QHF_FH_JSI12i_1	157.99	141.66			1.0105	1.0106	10.231	4	0	Median	1.109	0.89726	NaN	1	0	Median	0.92068	1.0819	NaN	1	0	Median	1.1391	1.1062	NaN	1	0	Median	0.88104	0.94408	NaN	1	0	Median	1528000000	786730000	741310000	400310000	200880000	199440000	395560000	215120000	180430000	358670000	167470000	191210000	373500000	203270000	170230000	52001	3503	48972	313822;313823;313824;313825	422306;422307;422308;422309;422310;422311;422312	422308			7	
TSQHLGSGQSAVR	0	Unmodified	1326.664	0.66402543	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			8.3844	7.8338	3	0.042702	5683	160511_QHF_FH_JSI10i_3	25.542	20.229			0.46077	0.54612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46077	0.54612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15385000	9657400	5727300	0	0	0	15385000	9657400	5727300	0	0	0	0	0	0	52002	4584	48973	313826	422313	422313			1	
TSQIYAQDENATHTQLYTSHFDLMK	1	Unmodified	2941.3552	0.3552364	4163	Q96L91	EP400	E1A-binding protein p400	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.692	65.398	4	0.0011312	56510	160511_QHF_FH_JSI12i_3	38.374	33.368			0.97725	0.96449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97725	0.96449	NaN	1	1	Median	27694000	10910000	16783000	0	0	0	0	0	0	0	0	0	27694000	10910000	16783000	52003	4163	48974	313827	422314	422314			1	
TSQLGDSPFYPGK	1	Unmodified	1395.667	0.66704513	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	1	2	2	53.577	49.509	2	4.0884E-10	45225	160511_QHF_FH_JSI12i_1	171.32	168.92			1.0103	1.0405	8.4073	6	0	Median	1.4375	1.1977	NaN	1	0	Median	0.89561	1.0374	NaN	1	0	Median	1.1075	1.1054	8.1364	2	0	Median	0.93763	0.99509	4.8904	2	0	Median	661110000	306710000	354400000	164510000	56852000	107660000	151720000	90189000	61532000	200540000	93040000	107500000	144330000	66629000	77699000	52004	1684	48975	313828;313829;313830;313831;313832;313833	422315;422316;422317;422318;422319;422320;422321;422322;422323;422324	422318			9	
TSQLGSDHENTEEVSMR	0	Unmodified	1918.8327	0.83268326	30	A6NJ78	METTL15	Probable methyltransferase-like protein 15	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.488	24.136	3	4.8055E-08	20130	160511_QHF_FH_JSI11i_2	114.29	98.169			0.92261	0.92915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92261	0.92915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24716000	9603500	15113000	0	0	0	0	0	0	24716000	9603500	15113000	0	0	0	52005	30	48976	313834	422325	422325			1	
TSQLLETLNQLSTHTHVVDITR	0	Unmodified	2505.3187	0.31871496	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0	By MS/MS				3	0			3							3				94.706	93.679	4	4.7608E-13	76562	160511_QHF_FH_JSI9i_3	103.95	97.589			1.2466	1.0663	5.1588	3	1	Median	1.2466	1.0663	5.1588	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88154000	39801000	48353000	88154000	39801000	48353000	0	0	0	0	0	0	0	0	0	52006	2516	48977	313835;313836;313837	422326;422327;422328	422328			2	
TSQLSYYYMGFYIHSCPK	1	Oxidation (M)	2259.9969	0.99691182	667	O95260	ATE1	Arginyl-tRNA--protein transferase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	75.157	66.663	3	2.1094E-24	34812	160513_QHF_FH_JSI12Kac_6	150.68	142.08			1.1654	1.1117	19.197	5	2	Median	1.4124	1.2224	13.424	2	1	Median	0.68222	0.80819	NaN	1	1	Median	1.0613	1.0437	NaN	1	0	Median	1.1654	1.2149	NaN	1	0	Median	150940000	79891000	71048000	48282000	24843000	23439000	33983000	20965000	13018000	33202000	17156000	16045000	35473000	16927000	18546000	52007	667	48978	313838;313839;313840;313841;313842	422329;422330;422331;422332;422333;422334;422335;422336;422337;422338	422334		233	10	
TSQLSYYYMGFYIHSCPK	1	Unmodified	2244.002	0.001997195	667	O95260	ATE1	Arginyl-tRNA--protein transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.892	71.608	3	1.6206E-70	39012	160513_QHF_FH_JSI11Kac_6	206.21	189.46			1.0073	1.0091	18.088	4	0	Median	1.1256	0.97404	NaN	1	0	Median	0.86998	1.0453	NaN	1	0	Median	0.90146	0.84868	NaN	1	0	Median	1.2324	1.3086	NaN	1	0	Median	530650000	272960000	257690000	84984000	38342000	46642000	151090000	84026000	67063000	212550000	109080000	103470000	82031000	41518000	40513000	52008	667	48978	313843;313844;313845;313846	422339;422340;422341;422342;422343;422344	422340			6	
TSQMQELHK	1	Unmodified	1100.5284	0.52844316	308	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	11.085	10.806	2;3	2.6533E-05	8738	160511_QHF_FH_JSI10i_2	104.01	86.774			0.94198	1.0016	61.64	5	0	Median	1.2427	1.0696	NaN	1	0	Median	0.81929	1.0016	NaN	1	0	Median	0.99546	1.0177	6.2939	2	0	Median	0.25352	0.25939	NaN	1	0	Median	281790000	164220000	117570000	30041000	15766000	14275000	35101000	17101000	18001000	146790000	87940000	58848000	69860000	43410000	26450000	52009	308	48979	313847;313848;313849;313850;313851	422345;422346;422347	422347			3	
TSQPPVPQGEAEEDSQGK	1	Unmodified	1882.8545	0.85446456	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	25.365	24.717	2	2.6086E-05	21647	160511_QHF_FH_JSI11i_1	103.76	96.391			1.3702	1.2641	11.686	3	0	Plateau	1.2378	1.0512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3702	1.3053	NaN	1	0	Median	1.2169	1.2641	NaN	1	0	Median	101340000	42489000	58853000	31285000	11090000	20194000	0	0	0	39403000	18452000	20951000	30653000	12946000	17707000	52010	2305	48980	313852;313853;313854	422348;422349;422350;422351;422352	422348			5	
TSQQLQLIDEQDSYIQSR	0	Unmodified	2151.0444	0.044390595	2369	Q13190	STX5	Syntaxin-5	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	4									1	1		2	64.781	64.119	2;3	6.5878E-13	58415	160511_QHF_FH_JSI12i_1	178.23	156.18			0.92294	1.0026	8.8876	4	2	Median	1.3642	1.1267	NaN	1	1	Median	0.85759	1.0024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92294	0.9534	7.1326	2	1	Median	145350000	75452000	69894000	36069000	13003000	23066000	40487000	22266000	18221000	0	0	0	68790000	40183000	28607000	52011	2369	48981	313855;313856;313857;313858	422353;422354;422355	422353			2	
TSQSVSGEEIDAMDVQQLSQIVPK	1	Unmodified	2588.264	0.26396178	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.423	94.075	3	4.8961E-13	85466	160511_QHF_FH_JSI12i_1	105.51	102.36			0.96213	0.96888	10.291	4	0	Median	1.3902	1.1383	NaN	1	0	Median	0.78515	0.92214	NaN	1	0	Median	1.0655	1.018	NaN	1	0	Median	0.86882	0.91313	NaN	1	0	Median	164580000	88222000	76355000	38491000	17742000	20749000	37864000	25454000	12410000	47305000	24533000	22772000	40916000	20493000	20423000	52012	2142	48982	313859;313860;313861;313862	422356;422357;422358;422359;422360;422361	422357			6	
TSQSWVER	0	Unmodified	991.47231	0.47230849	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	17.628	17.22	2	0.0020593	14520	160511_QHF_FH_JSI9i_2	80.684	34.668			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52013	4759	48983	313863;313864	422362;422363	422362			2	
TSQTVATFLDELAQK	1	Unmodified	1650.8465	0.84646606	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	97.354	97.33	2;3	0.00054677	86749	160511_QHF_FH_JSI11i_3	68.944	52.219			1.9532	2.1813	16.518	4	4	Linear	NaN	NaN	NaN	0	0	Median	2.1939	2.7299	NaN	1	1	Median	2.0355	1.8685	NaN	1	1	Median	2.1255	2.1813	9.3673	2	2	Median	1017100000	348640000	668410000	0	0	0	168810000	52755000	116060000	353100000	121370000	231740000	495140000	174520000	320620000	52014	1787	48984	313865;313866;313867;313868	422364;422365;422366;422367	422364			4	
TSQTWHGGIATIFQSPGDEVWGVVWK	1	Unmodified	2885.4137	0.41367798	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	94.15	85.663	3	1.4712E-20	48019	160513_QHF_FH_JSI9Kac_6	177.12	164.62			0.97361	1.0304	13.562	5	5	Median	1.231	1.0705	3.5862	2	2	Median	0.73416	0.86725	NaN	1	1	Median	0.83205	0.80004	NaN	1	1	Median	0.97361	1.0304	NaN	1	1	Median	1423500000	771880000	651580000	529600000	248620000	280980000	346770000	244980000	101790000	260350000	169690000	90665000	286730000	108590000	178150000	52015	494	48985	313869;313870;313871;313872;313873	422368;422369;422370;422371;422372	422369			5	
TSQVGAASAPAK	1	Unmodified	1086.5669	0.56693715	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	12.76	9.4262	2	1.5598E-07	8055	160511_QHF_FH_JSI11i_1	134.68	115.95			0.91841	1.0494	16.783	7	1	Median	1.8136	1.4707	NaN	1	1	Median	0.87311	1.0291	7.1236	2	0	Median	0.99311	0.96702	11.556	2	0	Median	0.92457	0.98899	12.458	2	0	Median	960140000	460010000	500140000	228150000	83640000	144520000	243820000	129810000	114020000	261080000	130520000	130570000	227080000	116040000	111040000	52016	2409	48986	313874;313875;313876;313877;313878;313879;313880	422373;422374;422375;422376;422377;422378;422379;422380	422373			8	
TSRPENAIIYNNNEDFQVGQAK	1	Unmodified	2507.2041	0.20407913	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	6.04	5	8	10					4	5	6	10	9	7	54.589	51.436	2;3;4	5.4975E-58	45738	160511_QHF_FH_JSI11i_3	219.65	204.89			0.93376	0.97901	12.071	31	8	Median	1.2717	1.0627	8.8487	6	1	Median	0.86706	1.0154	8.5382	9	2	Median	0.94722	0.94703	11.48	9	2	Median	0.85635	0.89621	12.392	7	3	Median	23947000000	11885000000	12062000000	4686200000	2032400000	2653800000	8418200000	4542300000	3876000000	8467900000	4053500000	4414400000	2374500000	1256900000	1117600000	52017	1322	48987	313881;313882;313883;313884;313885;313886;313887;313888;313889;313890;313891;313892;313893;313894;313895;313896;313897;313898;313899;313900;313901;313902;313903;313904;313905;313906;313907;313908;313909;313910;313911;313912	422381;422382;422383;422384;422385;422386;422387;422388;422389;422390;422391;422392;422393;422394;422395;422396;422397;422398;422399;422400;422401;422402;422403;422404;422405;422406;422407;422408;422409;422410;422411;422412;422413;422414;422415;422416;422417;422418;422419;422420;422421;422422;422423;422424;422425;422426;422427;422428;422429;422430;422431;422432;422433;422434;422435;422436;422437;422438;422439;422440;422441;422442;422443;422444;422445;422446;422447;422448;422449;422450;422451;422452	422385			71	
TSSAETPTIPLGSAVEAIK	1	Unmodified	1870.9888	0.9887732	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.746	8	3	2							4	4	2	3	79.4	78.834	2;3	4.2007E-67	70247	160511_QHF_FH_JSI9i_1	276.45	244.85			0.96858	0.96342	10.331	10	2	Median	1.1029	0.90939	9.7443	2	0	Median	0.81435	0.98267	9.5495	3	1	Plateau	0.96775	0.94543	11.318	2	0	Median	1.0011	1.0387	8.3685	3	1	Median	2881600000	1464000000	1417500000	647600000	309830000	337780000	746810000	428660000	318150000	827770000	402230000	425540000	659370000	323300000	336070000	52018	2780	48988	313913;313914;313915;313916;313917;313918;313919;313920;313921;313922;313923;313924;313925	422453;422454;422455;422456;422457;422458;422459;422460;422461;422462;422463;422464;422465;422466;422467;422468;422469;422470;422471;422472;422473;422474;422475;422476;422477;422478;422479	422474			27	
TSSAFVGK	1	Unmodified	795.41267	0.41266834	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			3	2	2	3	14.616	13.343	2	0.0028104	11112	160511_QHF_FH_JSI10i_1	77.282	44.812			0.98493	0.99211	22.888	10	1	Median	1.2855	1.0753	9.6933	3	0	Median	0.79275	0.95466	4.7314	2	0	Median	0.74515	0.73228	1.8483	2	0	Median	1.0208	1.0968	25.787	3	1	Median	1659900000	882020000	777850000	336130000	152080000	184050000	476940000	256710000	220230000	406260000	253230000	153040000	440540000	220000000	220540000	52019	4272	48989	313926;313927;313928;313929;313930;313931;313932;313933;313934;313935	422480;422481;422482;422483;422484;422485;422486;422487;422488;422489;422490;422491	422484			12	
TSSAFVGKTPEASPEPK	2	Acetyl (K)	1773.8785	0.87849447	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.481					4	7					6	2	3	53.69	44.351	2;3	1.1881E-06	23793	160513_QHF_FH_JSI12Kac_3	107.14	92.721			0.76326	0.85838	36.506	10	0	Median	NaN	NaN	NaN	0	0	Median	1.2476	1.4923	20.558	5	0	Median	0.68908	0.68025	0.57256	2	0	Median	0.67605	0.73956	6.5865	3	0	Median	88171000	48557000	39614000	0	0	0	32772000	14896000	17876000	23896000	13918000	9978100	31503000	19744000	11760000	52020	4272	48990	313936;313937;313938;313939;313940;313941;313942;313943;313944;313945;313946	422492;422493;422494;422495;422496;422497;422498;422499;422500;422501;422502;422503;422504	422499	3095		13	
TSSAQVEGGVHSLHSYEK	1	Unmodified	1914.9072	0.90716883	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	3	2	4	2	28.627	28.151	3;4	6.7688E-24	23461	160511_QHF_FH_JSI12i_3	181.14	170.8			0.81063	0.76969	18.246	10	4	Median	0.92522	0.79981	6.7002	2	1	Median	0.62711	0.76623	22.817	2	1	Median	0.79125	0.74358	17.12	4	2	Median	0.95202	0.97192	2.4224	2	0	Median	1053100000	578600000	474460000	81585000	36691000	44894000	128140000	73660000	54478000	430730000	228160000	202570000	412610000	240080000	172520000	52021	1015	48991	313947;313948;313949;313950;313951;313952;313953;313954;313955;313956;313957	422505;422506;422507;422508;422509;422510;422511;422512;422513;422514;422515;422516	422515			11	
TSSAVSTPSK	1	Unmodified	963.48729	0.48728985	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	8.9054	8.6073	2	0.0011226	6452	160511_QHF_FH_JSI10i_1	78.556	59.774			0.86843	0.97356	0.26389	2	1	Median	NaN	NaN	NaN	0	0	Median	0.82138	0.97538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91818	0.97175	NaN	1	0	Median	105570000	61512000	44060000	0	0	0	55445000	33591000	21854000	0	0	0	50127000	27921000	22207000	52022	5220	48992	313958;313959	422517;422518	422518			1	
TSSDNNVSVTNVSVAK	1	Unmodified	1620.7955	0.79549312	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				35.454	34.21	2	0.0082676	30069	160511_QHF_FH_JSI9i_1	46.069	30.925			0.80501	0.65788	NaN	1	0	Median	0.80501	0.65788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17272000	8135900	9135900	17272000	8135900	9135900	0	0	0	0	0	0	0	0	0	52023	1817	48993	313960	422519	422519			1	
TSSDPTCVEK	1	Unmodified	1122.4863	0.48630357	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.819	10.569	2	0.00056264	8209	160511_QHF_FH_JSI11i_1	86.898	76.188			0.67358	0.80808	23.398	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67358	0.80808	NaN	1	1	Median	0.62471	0.60632	NaN	1	1	Median	0.94302	0.96388	NaN	1	1	Median	234440000	124870000	109570000	0	0	0	67364000	38620000	28745000	81177000	43993000	37184000	85894000	42257000	43637000	52024	231	48994	313961;313962;313963	422520;422521;422522	422520			3	
TSSDSISR	0	Unmodified	851.39847	0.39847484	5170	Q9P000	COMMD9	COMM domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	6.0154	5.6693	2	0.024556	3693	160511_QHF_FH_JSI12i_1	44.349	34.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52025	5170	48995	313964	422523	422523			1	
TSSEASVSSSVAK	1	Unmodified	1238.599	0.59902514	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.62	4				2	1				1	2	3	1	15.888	14.032	2	7.4011E-05	11674	160511_QHF_FH_JSI10i_1	119.03	106.98			0.91725	0.91185	6.2561	5	0	Median	1.2299	1.0231	NaN	1	0	Median	0.77325	0.91185	NaN	1	0	Median	0.90859	0.88508	2.0939	2	0	Median	0.94175	0.95717	NaN	1	0	Median	417820000	205760000	212060000	87368000	42483000	44885000	113270000	60339000	52927000	101130000	48108000	53023000	116060000	54830000	61228000	52026	5113	48996	313965;313966;313967;313968;313969;313970;313971	422524;422525;422526;422527;422528;422529;422530;422531;422532	422528			9	
TSSESIYSRPGSSIPGSPGHTIYAK	1	Unmodified	2578.2663	0.26634504	181	O14639	ABLIM1	Actin-binding LIM protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				47.159	45.55	4	0.050788	37287	160511_QHF_FH_JSI9i_3	17.943	4.8861			0.72313	0.59344	NaN	1	1	Median	0.72313	0.59344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28913000	18840000	10073000	28913000	18840000	10073000	0	0	0	0	0	0	0	0	0	52027	181	48997	313972	422533	422533			1	
TSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK	1	Unmodified	2432.0589	0.058871461	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	29.188	28.359	2	2.2412E-39	24707	160511_QHF_FH_JSI9i_1	152.04	143.65			1.324	1.1679	45.274	4	4	Median	1.4469	1.1741	14.52	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3337	1.2874	NaN	1	1	Median	0.5032	0.49939	NaN	1	1	Median	64770000	25045000	39724000	31205000	11267000	19938000	0	0	0	19421000	5183400	14237000	14144000	8595100	5548500	52028	1688	48998	313973;313974;313975;313976	422534;422535;422536;422537	422537			4	
TSSGDASSLSIEETNK	1	Unmodified	1624.7428	0.74278885	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.668	30.293	2	5.1519E-10	26992	160511_QHF_FH_JSI10i_1	187.11	145.57			2.9433	2.8678	18.353	3	3	Median	NaN	NaN	NaN	0	0	Median	3.1376	3.6544	NaN	1	1	Median	2.9433	2.8678	NaN	1	1	Median	2.4873	2.5498	NaN	1	1	Median	284140000	88120000	196020000	0	0	0	105400000	28189000	77208000	90242000	33906000	56336000	88499000	26024000	62475000	52029	318	48999	313977;313978;313979;313980	422538;422539;422540;422541	422540			4	
TSSGLGGSTTDFLEEWK	1	Unmodified	1813.837	0.83702358	4130	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				84.87	84.036	2	1.6078E-24	74800	160511_QHF_FH_JSI9i_1	142.85	126.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52030	4130	49000	313981	422542	422542			1	
TSSGSIR	0	Unmodified	706.36097	0.36096712	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	4.6723	4.2897	2	0.0071107	2117	160511_QHF_FH_JSI11i_2	88.643	34.933			0.90381	0.95779	13.757	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0424	1.0556	NaN	1	0	Median	0.78365	0.86901	NaN	1	0	Median	302210000	150450000	151760000	0	0	0	0	0	0	176750000	84513000	92237000	125460000	65938000	59520000	52031	3614	49001	313982;313983	422543;422544	422543			2	
TSSGTKPSVKPTSATK	3	Unmodified	1575.8468	0.84680041	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	2	By MS/MS		By MS/MS		3	0			3							2		1		7.8964	7.5019	3;4	0.027566	5313	160511_QHF_FH_JSI11i_3	36.112	21.55			0.74483	0.61419	19.002	3	3	Median	0.77826	0.63688	5.129	2	2	Median	NaN	NaN	NaN	0	0	Median	0.49658	0.46105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	317070000	172400000	144670000	201260000	95828000	105430000	0	0	0	115810000	76572000	39242000	0	0	0	52032	2584	49002	313984;313985;313986	422545;422546;422547	422545			3	
TSSGTSLSAMHSSGSSGK	1	Unmodified	1667.7421	0.74207734	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				19.268	9.7372	3	0.051954	7496	160513_QHF_FH_JSI9Kac_5	19.819	15.189			1.4686	1.2014	NaN	1	0	Median	1.4686	1.2014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2331200	1162700	1168500	2331200	1162700	1168500	0	0	0	0	0	0	0	0	0	52033	2320	49003	313987	422548	422548			1	
TSSIHQLIAPASYSPIQPHSLIK	1	Unmodified	2487.3486	0.34855853	3632	Q8NDX5	PHC3	Polyhomeotic-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			4							2	1	1		75.071	73.986	4	0.0022094	60999	160511_QHF_FH_JSI9i_3	37.228	29.235			0.99858	0.87709	10.499	4	2	Median	1.1271	0.92171	14.948	2	2	Median	0.72486	0.81971	NaN	1	0	Median	0.98647	0.92767	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129060000	61107000	67956000	41067000	19979000	21088000	28837000	13366000	15471000	59158000	27761000	31397000	0	0	0	52034	3632	49004	313988;313989;313990;313991	422549;422550;422551	422551			3	
TSSIIFK	1	Unmodified	794.4538	0.45380487	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.137	35.703	2	0.039053	30366	160511_QHF_FH_JSI11i_2	47.849	22.85			0.77177	0.79726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77177	0.79726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92824000	51844000	40979000	0	0	0	0	0	0	92824000	51844000	40979000	0	0	0	52035	1005	49005	313992	422552	422552			1	
TSSLAPVVGTTTTTPSPSAIK	1	Unmodified	2015.0787	0.078650837	3875	Q92733	PRCC	Proline-rich protein PRCC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	62.253	61.618	2;3	3.5138E-36	55661	160511_QHF_FH_JSI10i_1	190.86	175.66			0.9302	1.0251	11.122	8	1	Median	1.2666	1.0251	4.0793	2	0	Median	0.9302	1.0921	2.0783	2	1	Median	0.93792	0.91226	20.767	2	0	Median	0.89947	0.93632	0.89325	2	0	Median	451040000	220320000	230720000	98328000	41050000	57278000	101610000	53324000	48286000	118890000	58637000	60252000	132210000	67310000	64902000	52036	3875	49006	313993;313994;313995;313996;313997;313998;313999;314000	422553;422554;422555;422556;422557;422558;422559;422560;422561;422562;422563;422564;422565;422566;422567;422568	422562			16	
TSSLDPNDQVAMGR	0	Unmodified	1489.6831	0.6831059	5120	Q9NY61	AATF	Protein AATF	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	36.63	36.2	2	0.00079731	32729	160511_QHF_FH_JSI12i_1	68.49	53.225			1.2701	1.2956	19.7	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5294	1.4893	NaN	1	0	Median	1.0548	1.1272	NaN	1	0	Median	56943000	26815000	30128000	0	0	0	0	0	0	34475000	14886000	19589000	22468000	11929000	10540000	52037	5120	49007	314001;314002	422569;422570;422571	422571			3	
TSSLTQFPPSQSEER	0	Unmodified	1692.7955	0.79549312	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	44.162	43.526	2	0.014496	39566	160511_QHF_FH_JSI12i_1	45.077	22.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52038	4759	49008	314003	422572	422572			1	
TSSMEISSILQELK	1	Unmodified	1564.8018	0.80182405	2928	Q5SW79;Q96L14	CEP170;CEP170P1	Centrosomal protein of 170 kDa;Cep170-like protein	yes	no	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	99.087	98.915	2	0.0014566	85131	160511_QHF_FH_JSI12i_2	75.695	64.938			0.85974	0.83626	8.9288	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70681	0.87625	NaN	1	0	Median	0.85974	0.83626	NaN	1	0	Median	0.89236	0.99383	NaN	1	0	Median	33199000	17690000	15508000	0	0	0	10269000	5087700	5181700	14075000	7379700	6695000	8854500	5222800	3631700	52039	2928	49009	314004;314005;314006	422573	422573			1	
TSSMLEVDDEGGR	0	Unmodified	1394.5984	0.59837321	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.626	34.039	2	0.011559	30763	160511_QHF_FH_JSI12i_1	67.456	55.243			0.85028	0.88845	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85028	0.88845	NaN	1	1	Median	20196000	10644000	9551600	0	0	0	0	0	0	0	0	0	20196000	10644000	9551600	52040	2547	49010	314007	422574	422574			1	
TSSQLVTMHDLK	1	Unmodified	1358.6864	0.68640036	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.034	36.6	2	0.0036057	31211	160511_QHF_FH_JSI11i_2	65.179	45.521			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11983000	11983000	0	0	0	0	0	0	0	11983000	11983000	0	0	0	0	52041	5674	49011	314008	422575	422575			1	
TSSQPGFLER	0	Unmodified	1120.5513	0.55128709	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	29.99	29.056	2	8.6546E-09	24546	160511_QHF_FH_JSI12i_2	123.35	58.05			0.84041	1.038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84041	1.038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40101000	23644000	16457000	0	0	0	40101000	23644000	16457000	0	0	0	0	0	0	52042	4423	49012	314009;314010;314011	422576;422577;422578	422576			3	
TSSSFAAAMAR	0	Unmodified	1098.5128	0.51279309	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	32.212	31.081	2	6.4498E-05	27265	160511_QHF_FH_JSI10i_2	93.098	84.758			0.83594	0.94603	9.9626	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83299	1.0151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83889	0.88168	NaN	1	1	Median	67658000	39317000	28342000	0	0	0	54090000	32417000	21672000	0	0	0	13569000	6899400	6669400	52043	1296	49013	314012;314013	422579;422580	422580			2	
TSSSIPPIILLQFLHMAFPQFAEK	1	Unmodified	2714.4506	0.45058076	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	3.46			1						12	4	2	5	2	101.27	93.211	2;3;4	1.3752E-129	52957	160513_QHF_FH_JSI9Kac_6	254.68	237.18			1.0031	0.97715	11.365	13	3	Median	1.1648	0.99592	6.2974	4	0	Median	0.86435	1.0153	9.2651	2	0	Median	0.99123	0.93316	15.927	5	3	Median	0.97571	1.0276	3.158	2	0	Median	11738000000	6022900000	5715400000	2542800000	1197900000	1344800000	3842500000	2086100000	1756400000	4417600000	2240200000	2177300000	935410000	498600000	436800000	52044	1824	49014	314014;314015;314016;314017;314018;314019;314020;314021;314022;314023;314024;314025;314026	422581;422582;422583;422584;422585;422586;422587;422588;422589;422590;422591;422592;422593;422594;422595	422586			14	
TSSSIPPIILLQFLHMAFPQFAEK	1	Oxidation (M)	2730.4455	0.44549538	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.712	91.279	3	8.8697E-78	49781	160513_QHF_FH_JSI12Kac_6	205.38	187.88			1.0088	1.0246	3.3266	4	0	Median	1.2327	1.0552	NaN	1	0	Median	0.84453	1.01	NaN	1	0	Median	1.0209	0.97862	NaN	1	0	Median	0.99676	1.0394	NaN	1	0	Median	2415400000	1298300000	1117100000	527730000	326680000	201050000	577640000	314050000	263590000	589710000	295180000	294530000	720350000	362360000	357980000	52045	1824	49014	314027;314028;314029;314030	422596;422597;422598;422599;422600;422601;422602;422603	422601		1509	8	
TSSSSPANSDVEIDGIGR	0	Unmodified	1790.8282	0.82824981	406	O60293	ZFC3H1	Zinc finger C3H1 domain-containing protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			43.918	43.5	2	2.8208E-11	39097	160511_QHF_FH_JSI10i_1	113.35	98.785			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52046	406	49015	314031	422604	422604			1	
TSSSSSFSDK	1	Unmodified	1031.4407	0.44073359	2201	Q03111	MLLT1	Protein ENL	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		7.843	7.6665	2	0.0047432	5474	160511_QHF_FH_JSI10i_1	64.711	45.981			1.0532	1.1056	5.246	2	2	Median	NaN	NaN	NaN	0	0	Median	0.96727	1.1474	NaN	1	1	Median	1.1467	1.0653	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	132130000	62372000	69760000	0	0	0	63195000	31391000	31804000	68937000	30981000	37956000	0	0	0	52047	2201	49016	314032;314033	422605;422606	422606			2	
TSSSSSFSDKKPAK	3	Acetyl (K)	1497.7311	0.73110195	2201	Q03111	MLLT1	Protein ENL	yes	yes	1	0	0	2				By MS/MS	14	0							1						1	22.498	14.928	3	0.016722	9549	160513_QHF_FH_JSI12Kac_4	48.112	43.407			1.1906	1.2839	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1906	1.2839	NaN	1	0	Median	5961600	2982700	2978900	0	0	0	0	0	0	0	0	0	5961600	2982700	2978900	52048	2201	49017	314034	422607	422607	2323;2324		1	
TSSTDLSDIPALPANPIPVIK	1	Unmodified	2148.1678	0.16780019	1724	P51003	PAPOLA	Poly(A) polymerase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	100.45	100.3	2;3	6.9086E-24	88599	160511_QHF_FH_JSI9i_1	181.98	169.42			1.0243	0.91215	11.043	8	3	Median	1.1483	0.98649	4.3926	3	2	Plateau	0.69926	0.81468	NaN	1	0	Median	0.90942	0.88141	5.6393	2	1	Median	0.98738	0.99949	21.199	2	0	Median	206690000	107170000	99520000	70473000	31015000	39458000	27732000	18055000	9677000	64080000	35566000	28514000	44407000	22535000	21872000	52049	1724	49018	314035;314036;314037;314038;314039;314040;314041;314042;314043	422608;422609;422610;422611;422612;422613;422614;422615;422616;422617	422617			10	
TSSTLSEDQMSR	0	Unmodified	1340.5878	0.58780853	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			18.478	18.221	2	0.0044204	15590	160511_QHF_FH_JSI10i_1	54.584	47.695			0.88772	1.0319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88772	1.0319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41318000	26661000	14657000	0	0	0	41318000	26661000	14657000	0	0	0	0	0	0	52050	3636	49019	314044	422618	422618			1	
TSSVFEDPVISK	1	Unmodified	1307.6609	0.66089712	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	55.479	54.733	2	3.9014E-05	49713	160511_QHF_FH_JSI12i_1	103.31	95.663			0.99141	0.8741	5.4787	3	0	Plateau	1.0578	0.87761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99141	0.96297	NaN	1	0	Median	0.83506	0.8741	NaN	1	0	Median	594150000	302390000	291760000	192060000	90646000	101420000	0	0	0	168200000	91586000	76609000	233890000	120160000	113730000	52051	5532	49020	314045;314046;314047	422619	422619			1	
TSSVGNDILGFDSEGNVVNKPDSHGGSLEWTK	2	Unmodified	3345.5749	0.57494224	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	75.757	75.615	4	2.7078E-17	67548	160511_QHF_FH_JSI11i_3	82.058	79.651			0.93798	0.91022	3.9812	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95856	0.88495	NaN	1	0	Median	0.91784	0.9362	NaN	1	0	Median	237340000	121330000	116010000	0	0	0	0	0	0	140180000	66994000	73186000	97158000	54334000	42823000	52052	103	49021	314048;314049	422620;422621;422622;422623	422621			4	
TSSVLGMSVESAPAVEEEK	1	Unmodified	1948.9299	0.92993769	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		65.23	64.621	2	3.6567E-17	58745	160511_QHF_FH_JSI11i_1	176.87	160.93			1.3726	1.1187	30.438	3	3	Median	1.3726	1.1187	NaN	1	1	Median	0.86954	0.96199	NaN	1	1	Median	1.7809	1.7288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45424000	12374000	33050000	16263000	4397300	11865000	12645000	3250000	9395000	16516000	4726900	11790000	0	0	0	52053	2320	49022	314050;314051;314052	422624;422625;422626	422624			3	
TSSVLGMSVESAPAVEEEKGEELEQK	2	Unmodified	2762.3168	0.31678521	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		67.621	67.197	3	9.6038E-06	61121	160511_QHF_FH_JSI11i_1	52.061	48.792			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9263500	0	9263500	0	0	0	0	0	0	9263500	0	9263500	0	0	0	52054	2320	49023	314053;314054	422627;422628	422627			2	
TSSVPEYVYNLHLVENDFVGGR	0	Unmodified	2494.2129	0.21285291	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	94.614	94.438	3	0.00033929	81729	160511_QHF_FH_JSI12i_3	45.395	41.5			1.5052	1.6645	16.852	3	1	Plateau	1.5264	1.3142	NaN	1	1	Median	1.5036	1.8376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5081	1.5076	NaN	1	0	Median	74114000	34230000	39885000	11843000	4826300	7016300	32504000	14775000	17729000	0	0	0	29768000	14628000	15139000	52055	4330	49024	314055;314056;314057	422629;422630;422631;422632	422632			4	
TSSVSNPQDSVGSPCSR	0	Unmodified	1763.7744	0.7744401	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	23.222	22.361	2	3.4977E-06	19644	160511_QHF_FH_JSI12i_1	115.14	103.92			1.9518	1.991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9518	1.991	NaN	1	1	Median	22273000	4419300	17853000	3578800	0	3578800	0	0	0	0	0	0	18694000	4419300	14275000	52056	1640	49025	314058;314059;314060	422633;422634;422635	422633			3	
TSTAPAASPNVR	0	Unmodified	1170.5993	0.59929991	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	2	1	2	18.014	14.078	2	0.00014695	11626	160511_QHF_FH_JSI9i_1	83.862	66.631			0.99397	1.0901	7.9848	6	0	Median	1.3696	1.1338	NaN	1	0	Median	0.9479	1.1183	6.3969	2	0	Median	0.99248	0.97415	NaN	1	0	Median	0.96239	1.0368	9.8752	2	0	Median	707770000	329990000	377780000	195210000	73147000	122060000	237330000	118850000	118480000	5070100	2860400	2209600	270160000	135140000	135020000	52057	1002	49026	314061;314062;314063;314064;314065;314066	422636;422637;422638;422639;422640;422641	422639			4	
TSTAPLDR	0	Unmodified	859.43995	0.43994572	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.022	11.618	2	0.0076682	9098	160511_QHF_FH_JSI9i_1	58.815	34.843			0.95992	0.95164	5.0869	4	0	Median	1.1642	0.9695	NaN	1	0	Median	0.77778	0.9341	NaN	1	0	Median	0.95066	0.92417	NaN	1	0	Median	0.96927	1.0343	NaN	1	0	Median	1149700000	597440000	552250000	213200000	96780000	116420000	292580000	163730000	128850000	294110000	154720000	139390000	349810000	182210000	167600000	52058	3071	49027	314067;314068;314069;314070	422642;422643;422644;422645;422646;422647	422647			6	
TSTDVMDSQEALAFLK	1	Unmodified	1754.8397	0.83966612	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	87.623	87.108	2	1.2404E-07	77396	160511_QHF_FH_JSI9i_1	138.94	114.59			0.88707	0.87531	7.2538	6	4	Median	1.0705	0.90624	10.13	2	2	Median	0.74149	0.86403	NaN	1	0	Median	0.84308	0.80392	NaN	1	0	Median	0.88707	0.91811	4.9157	2	2	Median	189660000	102180000	87482000	59619000	29372000	30247000	38184000	21846000	16338000	29883000	15363000	14520000	61975000	35598000	26377000	52059	2279	49028	314071;314072;314073;314074;314075;314076;314077	422648;422649;422650;422651;422652;422653;422654;422655	422655			8	
TSTGAPAAIK	1	Unmodified	915.50255	0.50254598	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.82	4.39	4	3	2			2				2	3	3	3	16.472	14.548	2	2.297E-06	9304	160513_QHF_FH_JSI11Kac_3	122.52	68.359			0.91236	0.97973	47.919	10	2	Median	0.63349	0.53159	66.089	2	1	Median	0.82143	0.97035	14.726	3	0	Median	1.2626	1.2183	45.472	3	1	Median	0.91236	0.98489	11.182	2	0	Median	4677700000	2607100000	2070600000	1862600000	1091200000	771330000	894730000	506850000	387880000	964760000	501020000	463740000	955650000	507970000	447690000	52060	1490	49029	314078;314079;314080;314081;314082;314083;314084;314085;314086;314087;314088	422656;422657;422658;422659;422660;422661;422662;422663;422664;422665;422666;422667;422668	422662			12	
TSTGAPAAIKK	2	Unmodified	1043.5975	0.597509	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.77		4	7				2	4		4	5	3	5	12.925	9.4274	2;3	2.4271E-09	7828	160511_QHF_FH_JSI12i_3	134.26	72.298			0.8648	0.86406	44.198	16	4	Median	1.2192	1.0355	16.262	3	0	Median	0.78249	0.92969	73.792	5	2	Median	0.86635	0.82964	1.7054	3	0	Plateau	0.85089	0.88162	39.419	5	2	Median	4990100000	2653700000	2336400000	335110000	157460000	177660000	486620000	269580000	217050000	1570100000	807070000	763080000	2598200000	1419600000	1178700000	52061	1490	49030	314089;314090;314091;314092;314093;314094;314095;314096;314097;314098;314099;314100;314101;314102;314103;314104;314105	422669;422670;422671;422672;422673;422674;422675;422676;422677;422678;422679;422680;422681;422682;422683;422684;422685;422686;422687;422688;422689;422690;422691;422692;422693	422692			25	
TSTILAAAR	0	Unmodified	902.51853	0.5185304	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.33	1	3	1				2	3		1	3	4	2	31.382	26.256	2	0.00045216	22417	160511_QHF_FH_JSI11i_3	80.438	53.476			1.0079	1.035	14.744	10	0	Median	1.2509	1.0846	NaN	1	0	Median	0.81612	0.9764	2.596	3	0	Median	1.0947	1.0713	20.447	4	0	Median	0.94566	1.0215	14.086	2	0	Median	478280000	227690000	250590000	78903000	33242000	45662000	116860000	66049000	50808000	222250000	98838000	123410000	60275000	29562000	30714000	52062	1428	49031	314106;314107;314108;314109;314110;314111;314112;314113;314114;314115	422694;422695;422696;422697	422694			4	
TSTILGDITSIPELADYIK	1	Unmodified	2049.0882	0.08815289	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.26	102.19	2	2.5122E-33	90073	160511_QHF_FH_JSI9i_2	229.9	197.83			1.0773	0.9158	NaN	1	1	Median	1.0773	0.9158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141840000	61395000	80445000	141840000	61395000	80445000	0	0	0	0	0	0	0	0	0	52063	3965	49032	314116	422698	422698			1	
TSTPEDFIR	0	Unmodified	1064.5138	0.51383895	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	3	1	2	43.112	42.284	2	6.0004E-06	38171	160511_QHF_FH_JSI11i_1	113.71	52.947			0.99265	1.0852	6.1671	6	0	Median	1.3802	1.1475	NaN	1	0	Median	0.92711	1.1145	9.7653	2	0	Median	1.0663	1.0399	NaN	1	0	Median	0.99265	1.084	6.174	2	0	Median	1462000000	722930000	739100000	213970000	90673000	123300000	400680000	224350000	176330000	386450000	179350000	207100000	460930000	228560000	232370000	52064	5616	49033	314117;314118;314119;314120;314121;314122;314123	422699;422700;422701;422702;422703;422704;422705	422699			7	
TSTQEYAAK	1	Unmodified	997.47164	0.47163978	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	8.6655	8.2765	2	0.0012236	5863	160511_QHF_FH_JSI9i_1	73.157	34.365			1.1626	0.9969	14.746	3	1	Median	1.2233	0.9969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1626	1.1463	NaN	1	0	Median	0.83953	0.85363	NaN	1	0	Median	388230000	203020000	185220000	135290000	67859000	67436000	0	0	0	136790000	64617000	72172000	116150000	70539000	45612000	52065	2439	49034	314124;314125;314126;314127;314128	422706;422707;422708;422709;422710;422711;422712	422712			7	
TSTSAVPNLFVPLNTNPK	1	Unmodified	1899.0102	0.010177341	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	83.975	83.466	2;3	4.7523E-08	76019	160511_QHF_FH_JSI11i_1	121.28	99.234			1.3273	1.4314	27.112	7	4	Median	2.3759	1.9151	41.17	2	1	Median	1.3245	1.5645	NaN	1	1	Median	1.3014	1.224	2.4039	2	1	Median	1.3305	1.3275	19.842	2	1	Median	134320000	48331000	85991000	38776000	10661000	28115000	16249000	5916700	10333000	48061000	18933000	29128000	31235000	12821000	18415000	52066	1440	49035	314129;314130;314131;314132;314133;314134;314135	422713;422714;422715;422716;422717;422718	422714			6	
TSTSNVEQYQAMVTSLEESLNK	1	Unmodified	2458.1533	0.1533487	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	101.18	101.09	2;3	2.1112E-23	91642	160511_QHF_FH_JSI12i_1	166.69	153.37			1.1046	1.1406	25.561	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.81824	0.96633	NaN	1	0	Median	1.1832	1.1303	NaN	1	0	Median	0.79758	0.82955	36.108	2	0	Median	798070000	393450000	404610000	0	0	0	133940000	73585000	60352000	312020000	142580000	169440000	352110000	177290000	174820000	52067	1016	49036	314136;314137;314138;314139	422719;422720;422721;422722;422723	422720			5	
TSTSPPPEK	1	Unmodified	942.46583	0.46582612	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.67	5.19	4				2					1	2	2	1	7.5344	4.8911	2	0.00057375	4583	160511_QHF_FH_JSI11i_1	78.149	59.367			0.85538	0.79459	8.9398	6	0	Median	0.90907	0.73447	NaN	1	0	Median	0.63672	0.72683	5.8632	2	0	Median	0.89081	0.84471	1.9071	2	0	Median	0.82923	0.86406	NaN	1	0	Median	720380000	419640000	300740000	232850000	131040000	101810000	166730000	107790000	58948000	167420000	91589000	75827000	153380000	89225000	64159000	52068	4657	49037	314140;314141;314142;314143;314144;314145	422724;422725;422726;422727	422725			4	
TSTSQAVFR	0	Unmodified	995.50361	0.50360861	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.3		5	1				1	4		2	3	3	3	22.419	17.621	2	4.2131E-06	14908	160511_QHF_FH_JSI12i_2	120.12	88.185			0.78921	0.80238	19.139	10	1	Median	0.96774	0.82438	18.683	2	0	Median	0.66834	0.78538	12.643	2	1	Median	0.83052	0.81808	10.729	3	0	Median	0.73637	0.78699	33.914	3	0	Median	946190000	530990000	415200000	183480000	101090000	82394000	147340000	90394000	56947000	242760000	139500000	103260000	372610000	200010000	172600000	52069	1064	49038	314146;314147;314148;314149;314150;314151;314152;314153;314154;314155;314156	422728;422729;422730;422731;422732;422733;422734;422735;422736;422737;422738	422728			11	
TSTSSSSVQAR	0	Unmodified	1109.5313	0.53127993	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13	0						2					1	1		6.4204	-0.90463	2	0.0089309	2392	160513_QHF_FH_JSI11Kac_3	55.549	43.781			0.81071	0.83094	5.7474	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78534	0.86541	NaN	1	0	Median	0.8369	0.79785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5637800	3064600	2573200	0	0	0	1112300	652330	459920	4525500	2412300	2113300	0	0	0	52070	5380	49039	314157;314158	422739	422739			1	
TSTTGSILNLNLDR	0	Unmodified	1503.7893	0.78928553	5410	Q9ULU4	ZMYND8	Protein kinase C-binding protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			18.916	18.658	2	0.040327	15976	160511_QHF_FH_JSI10i_1	46.462	31.49			1.7489	2.0482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7489	2.0482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57975000	22813000	35162000	0	0	0	57975000	22813000	35162000	0	0	0	0	0	0	52071	5410	49040	314159	422740	422740			1	
TSTTGVATTQSPTPR	0	Unmodified	1503.7529	0.75290002	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	2	3	21.364	18.558	2	2.1056E-24	11549	160513_QHF_FH_JSI11Kac_3	160.15	135.3			1.0177	1.01	7.2586	6	2	Median	1.0782	0.8876	NaN	1	1	Median	0.82892	0.99311	NaN	1	0	Median	1.015	0.99593	4.3779	2	0	Median	1.0177	1.0716	2.3962	2	1	Median	551770000	273460000	278310000	139810000	70158000	69651000	125170000	69374000	55799000	154810000	72780000	82028000	131980000	61146000	70831000	52072	3799	49041	314160;314161;314162;314163;314164;314165;314166	422741;422742;422743;422744;422745;422746;422747;422748;422749;422750	422746			10	
TSTTSSMVASAEQPR	0	Unmodified	1551.7199	0.71988533	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	8	2				4				3	5	4	2	30.339	27.041	2;3	1.0632E-208	23882	160511_QHF_FH_JSI10i_1	333.03	297.62			0.91156	0.96645	9.7242	12	0	Median	1.4296	1.1812	NaN	1	0	Median	0.8452	1.0125	9.3213	5	0	Median	0.94862	0.92902	5.2835	4	0	Median	0.96997	1.0013	8.9213	2	0	Median	1749700000	890210000	859450000	217120000	91054000	126060000	624870000	340320000	284540000	582140000	303410000	278730000	325540000	155430000	170110000	52073	1516	49042	314167;314168;314169;314170;314171;314172;314173;314174;314175;314176;314177;314178;314179;314180	422751;422752;422753;422754;422755;422756;422757;422758;422759;422760;422761;422762;422763;422764;422765;422766;422767;422768;422769;422770	422761			20	
TSTTSSMVASAEQPR	0	Oxidation (M)	1567.7148	0.71479996	1516	P41236;Q6NXS1	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	yes	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	7	6	3					3				1		3	2	24.585	20.58	2	7.1888E-66	24101	160511_QHF_FH_JSI12i_1	237.67	212.84			1.0476	1.0233	54.814	6	1	Median	1.5117	1.2358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28916	0.28415	74.166	3	0	Plateau	0.87763	0.91025	29.132	2	0	Median	333980000	157960000	176020000	73143000	31820000	41323000	0	0	0	127580000	61832000	65750000	133250000	64305000	68948000	52074	1516	49042	314181;314182;314183;314184;314185;314186	422771;422772;422773;422774;422775;422776	422772		1191	6	
TSTTSSMVASAEQPRGNVDEELSK	1	Unmodified	2523.1759	0.17587505	1516	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	0	0	1		By MS/MS			1	0	1										1			46.073	45.647	3	2.2384E-09	41072	160511_QHF_FH_JSI10i_1	99.366	91.374			1.3947	1.6192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3947	1.6192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29125000	8563100	20561000	0	0	0	29125000	8563100	20561000	0	0	0	0	0	0	52075	1516	49043	314187	422777	422777			1	
TSTVDLPIENQLLWQIDR	0	Unmodified	2140.1164	0.11643333	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.39	101.37	2	1.524E-11	92078	160511_QHF_FH_JSI10i_1	213.99	95.474			0.44125	0.52517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44125	0.52517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	262400000	174060000	88337000	0	0	0	262400000	174060000	88337000	0	0	0	0	0	0	52076	1417	49044	314188;314189	422778;422779	422779			2	
TSTVINWFHNYR	0	Unmodified	1536.7474	0.74736113	1489	P39880	CUX1	Homeobox protein cut-like 1	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			71.053	62.952	3	0.0060305	34491	160513_QHF_FH_JSI10Kac_6	66.498	53.871			0.91273	0.91037	36.503	2	0	Median	0.81882	0.70326	NaN	1	0	Median	1.0174	1.1785	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	140000000	72944000	67054000	24085000	10844000	13241000	115910000	62100000	53813000	0	0	0	0	0	0	52077	1489	49045	314190;314191	422780	422780			0	
TSVDAAEDYAEGVR	0	Unmodified	1481.6634	0.66341631	2184	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		45.82	45.405	2	0.00043203	40794	160511_QHF_FH_JSI10i_1	73.435	55.571			0.77014	0.83225	3.6585	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67158	0.811	NaN	1	0	Median	0.88317	0.85406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144470000	80341000	64133000	0	0	0	65190000	42390000	22800000	79284000	37951000	41333000	0	0	0	52078	2184	49046	314192;314193	422781;422782;422783	422783			3	
TSVDEITSGK	1	Unmodified	1035.5084	0.50841922	2849	Q53EZ4	CEP55	Centrosomal protein of 55 kDa	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		27.585	26.856	2	0.047753	23306	160511_QHF_FH_JSI9i_1	43.651	25.754			0.78943	0.70527	10.567	2	2	Median	0.79932	0.65449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77965	0.75999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145160000	90729000	54434000	92018000	58491000	33526000	0	0	0	53146000	32238000	20908000	0	0	0	52079	2849	49047	314194;314195	422784;422785	422785			2	
TSVFLVR	0	Unmodified	820.48069	0.48068833	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	47.512	46.594	2	0.0065547	39622	160511_QHF_FH_JSI12i_3	90.706	70.86			0.99554	0.99469	18.772	8	0	Median	1.315	1.1054	18.732	2	0	Median	0.88299	1.0517	8.1687	2	0	Median	0.93848	0.92641	10.337	2	0	Median	0.79765	0.83096	30.818	2	0	Median	697920000	342740000	355180000	129250000	51680000	77573000	175160000	92745000	82418000	185890000	91058000	94837000	207600000	107260000	100350000	52080	3736	49048	314196;314197;314198;314199;314200;314201;314202;314203	422786;422787;422788;422789;422790;422791;422792;422793;422794	422794			9	
TSVIQGIHTDHNTLK	1	Unmodified	1662.8689	0.86893283	2976	Q5U5X0	LYRM7	Complex III assembly factor LYRM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	3	2	2	33.338	32.609	2;3;4	9.9817E-08	28244	160511_QHF_FH_JSI11i_3	138.91	116.1			1.1883	1.1538	35.983	8	2	Median	1.0981	0.90328	NaN	1	1	Median	1.3245	1.5373	63.892	3	0	Median	1.3258	1.2521	4.2011	2	0	Median	1.0267	1.048	6.243	2	1	Median	729610000	361060000	368550000	21995000	8617300	13378000	223390000	119160000	104230000	210350000	97938000	112420000	273870000	135350000	138520000	52081	2976	49049	314204;314205;314206;314207;314208;314209;314210;314211	422795;422796;422797;422798;422799;422800;422801;422802;422803;422804;422805	422795			9	
TSVLAAANPIESQWNPK	1	Unmodified	1824.937	0.9370124	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.48	2.76	7	10	5					1		3	6	7	7	75.474	74.882	2;3	1.5552E-65	65905	160511_QHF_FH_JSI11i_2	281.25	267.44			0.86029	0.86126	22.625	22	9	Median	1.0356	0.88431	35.806	3	1	Plateau	0.62498	0.7632	16.425	6	5	Median	0.86029	0.82657	13.442	6	1	Median	1.0075	1.104	9.5984	7	2	Median	1602300000	838260000	764000000	230770000	121910000	108860000	398960000	229810000	169160000	524870000	280090000	244780000	447650000	206460000	241190000	52082	1409	49050	314212;314213;314214;314215;314216;314217;314218;314219;314220;314221;314222;314223;314224;314225;314226;314227;314228;314229;314230;314231;314232;314233;314234	422806;422807;422808;422809;422810;422811;422812;422813;422814;422815;422816;422817;422818;422819;422820;422821;422822;422823;422824;422825;422826;422827;422828;422829;422830;422831;422832;422833;422834;422835;422836;422837;422838;422839;422840;422841;422842;422843;422844	422831			38	
TSVLAAANPIESQWNPKK	2	Unmodified	1953.032	0.031975416	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		67.53	66.54	3	1.3555E-06	59222	160511_QHF_FH_JSI11i_3	103.5	92.386			0.82864	0.66639	14.869	3	2	Plateau	0.82864	0.66639	NaN	1	0	Median	0.69125	0.8049	NaN	1	1	Median	0.95092	0.89359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	120230000	70989000	49241000	31006000	16519000	14486000	43077000	27858000	15219000	46147000	26611000	19536000	0	0	0	52083	1409	49051	314235;314236;314237	422845;422846;422847	422845			3	
TSVLEMIAQAR	0	Unmodified	1217.6438	0.64380726	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		84.169	83.349	2	0.00021919	74232	160511_QHF_FH_JSI11i_3	80.231	58.783			0.99073	0.94555	10.3	3	0	Median	1.3657	1.1165	NaN	1	0	Median	0.80768	0.92469	NaN	1	0	Median	0.99073	0.94555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218450000	97402000	121050000	76361000	32074000	44286000	59797000	32247000	27549000	82293000	33080000	49213000	0	0	0	52084	409	49052	314238;314239;314240	422848	422848			1	
TSVLFSKK	2	Acetyl (K)	950.54368	0.54368251	1851	P55201	BRPF1	Peregrin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.696							1	3	4	1	2	3	2	53.133	43.131	2	0.010376	22199	160513_QHF_FH_JSI12Kac_5	101.43	81.794			0.9708	1.0448	30.476	8	0	Median	0.76966	0.67081	NaN	1	0	Median	0.7177	0.85225	7.6946	2	0	Median	1.3371	1.3111	17.415	3	0	Median	0.9708	1.0491	24.215	2	0	Median	628590000	305330000	323250000	66446000	38520000	27925000	127390000	75414000	51974000	243320000	96074000	147250000	191430000	95326000	96105000	52085	1851	49053	314241;314242;314243;314244;314245;314246;314247;314248	422849;422850;422851;422852;422853;422854;422855;422856	422852	1866		8	
TSVLHVMVK	1	Unmodified	1012.5739	0.57393679	3621	Q8NCN5	PDPR	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		6.25	5.63			3						1	1	1	2		40.278	37.118	3	0.0011407	20493	160513_QHF_FH_JSI11Kac_6	62.463	53.55			1.2696	1.3007	18.189	4	1	Median	1.2067	0.969	NaN	1	0	Median	1.2461	1.4516	NaN	1	0	Median	1.3564	1.3007	9.5191	2	1	Median	NaN	NaN	NaN	0	0	Median	127740000	65646000	62094000	30973000	14403000	16569000	32862000	16877000	15985000	63905000	34366000	29539000	0	0	0	52086	3621	49054	314249;314250;314251;314252	422857;422858;422859	422858			2	
TSVLLEQMMR	0	Unmodified	1206.6101	0.6100643	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0		By matching		By MS/MS	3	0			2								1		1	68.761	67.876	2	0.00161	58768	160511_QHF_FH_JSI12i_3	64.841	43.377			0.9751	1.0556	21.185	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78158	0.90877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.2262	NaN	1	0	Median	131590000	74204000	57385000	0	0	0	45202000	26142000	19060000	0	0	0	86388000	48063000	38325000	52087	4829	49055	314253;314254	422860;422861	422861			2	
TSVPENHAQSR	0	Unmodified	1224.5847	0.58471248	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.24		4	3					2		1	1	5	2	6.5559	5.1737	2;3	1.825E-05	3932	160511_QHF_FH_JSI11i_2	105.98	79.591			1.2754	1.307	10.291	8	3	Median	1.5067	1.3593	NaN	1	1	Median	1.1599	1.4213	NaN	1	0	Median	1.3565	1.3174	11.607	4	2	Median	1.1123	1.188	7.9521	2	0	Median	644240000	294830000	349400000	46974000	20319000	26655000	45313000	21485000	23828000	440240000	204270000	235980000	111710000	48764000	62943000	52088	5474	49056	314255;314256;314257;314258;314259;314260;314261;314262;314263	422862;422863;422864;422865;422866;422867;422868;422869;422870;422871;422872	422866			11	
TSVPSSK	1	Unmodified	704.37047	0.37046918	2558	Q14677;P51826	CLINT1;AFF3	Clathrin interactor 1;AF4/FMR2 family member 3	yes	no	0	0	0	0		By MS/MS			1	0	1										1			7.2615	7.0243	2	0.024196	4782	160511_QHF_FH_JSI10i_1	58.194	10.079			0.38344	0.44417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.38344	0.44417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1123800000	943320000	180450000	0	0	0	1123800000	943320000	180450000	0	0	0	0	0	0	52089	2558	49057	314264	422873	422873			1	
TSVQFQNFSPTVVHPGDLQTQLAVQTK	1	Unmodified	2969.5247	0.52468499	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							1	2	3	2	85.84	85.463	3;4	4.7173E-50	76281	160511_QHF_FH_JSI11i_3	195.63	184.42			0.88852	0.92926	27.885	8	1	Median	1.0983	0.9212	NaN	1	0	Median	0.80728	0.94997	10.685	2	1	Median	0.94121	0.93738	45.624	3	0	Median	0.88331	0.92688	3.0236	2	0	Median	696160000	371060000	325100000	62034000	29614000	32420000	77969000	46903000	31066000	242470000	131050000	111410000	313690000	163480000	150200000	52090	726	49058	314265;314266;314267;314268;314269;314270;314271;314272	422874;422875;422876;422877;422878;422879;422880;422881;422882;422883;422884;422885;422886;422887;422888;422889;422890;422891;422892;422893;422894;422895;422896;422897	422876			24	
TSVQPTFTASQYR	0	Unmodified	1484.726	0.72595699	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1								2	1	3	42.676	41.926	2	3.7185E-10	37859	160511_QHF_FH_JSI11i_1	144.17	75.801			0.76995	0.92613	11.405	5	2	Median	NaN	NaN	NaN	0	0	Median	0.74668	0.8936	5.0572	2	0	Median	0.98378	0.9619	NaN	1	0	Median	0.7678	0.83818	19.09	2	2	Median	322350000	177820000	144540000	0	0	0	128470000	75203000	53262000	83303000	43506000	39797000	110580000	59106000	51477000	52091	2947	49059	314273;314274;314275;314276;314277;314278	422898;422899;422900;422901;422902;422903;422904	422899			7	
TSVQTEDDQLIAGQSAR	0	Unmodified	1817.8755	0.87553435	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	42.892	40.531	2;3	0	36714	160511_QHF_FH_JSI12i_1	397.92	397.92			1.0219	1.0188	17.899	10	1	Median	1.314	1.0834	8.2125	2	1	Median	0.7166	0.84365	17.548	2	0	Median	0.96637	0.94031	8.8306	3	0	Median	1.1777	1.2827	14.363	3	0	Median	1271800000	637710000	634090000	252140000	103530000	148610000	285330000	167470000	117860000	328770000	153990000	174780000	405570000	212720000	192840000	52092	1421;1272	49060	314279;314280;314281;314282;314283;314284;314285;314286;314287;314288	422905;422906;422907;422908;422909;422910;422911;422912;422913;422914;422915	422908			11	
TSVTDFLR	0	Unmodified	937.4869	0.48689592	3460	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	63.653	62.772	2	0.00046728	53813	160511_QHF_FH_JSI12i_2	120.49	75.543			1.0774	1.1176	11.939	4	0	Median	1.1257	0.97389	NaN	1	0	Median	1.0015	1.2239	NaN	1	0	Median	1.0624	1.0216	NaN	1	0	Median	1.0926	1.2225	NaN	1	0	Median	183560000	87715000	95848000	42899000	16462000	26437000	43763000	24093000	19669000	25781000	12007000	13774000	71121000	35153000	35968000	52093	3460	49061	314289;314290;314291;314292;314293	422916;422917;422918;422919;422920	422917			5	
TSVTDVK	1	Unmodified	748.39668	0.39668393	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	5.66	1					2				1		1	1	16.403	11.294	2	0.010719	10052	160511_QHF_FH_JSI9i_1	73.616	37.029			1.1015	0.89555	2.1635	3	0	Plateau	1.1015	0.90912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89777	0.87116	NaN	1	0	Median	0.83168	0.89555	NaN	1	0	Median	201250000	91971000	109280000	189190000	85430000	103760000	0	0	0	7476900	4003800	3473000	4579800	2537200	2042600	52094	4042	49062	314294;314295;314296	422921;422922;422923	422923			3	
TSVVGLFLR	0	Unmodified	990.58622	0.58621603	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.281	75.686	2	0.00011774	41673	160513_QHF_FH_JSI10Kac_6	110.12	60.678			0.84637	1.0158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84637	1.0158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93013000	52592000	40421000	0	0	0	93013000	52592000	40421000	0	0	0	0	0	0	52095	5352	49063	314297	422924	422924			1	
TSYAQHQQVR	0	Unmodified	1216.5949	0.59488324	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.68	6.49		9	8					3	8	7	7	6	8	7.6828	4.5146	2;3	1.0037E-69	4090	160511_QHF_FH_JSI12i_3	251.17	223			0.97242	0.97606	18.279	27	3	Median	1.3341	1.1147	13.662	7	1	Median	0.84605	0.9763	15.378	7	0	Median	0.97451	0.95599	5.7646	6	0	Median	0.76039	0.78638	8.3271	7	2	Median	13930000000	7035500000	6894100000	2654700000	1073100000	1581600000	5401900000	2801400000	2600500000	3151100000	1565700000	1585400000	2721900000	1595300000	1126600000	52096	1948	49064	314298;314299;314300;314301;314302;314303;314304;314305;314306;314307;314308;314309;314310;314311;314312;314313;314314;314315;314316;314317;314318;314319;314320;314321;314322;314323;314324;314325	422925;422926;422927;422928;422929;422930;422931;422932;422933;422934;422935;422936;422937;422938;422939;422940;422941;422942;422943;422944;422945;422946;422947;422948;422949;422950;422951;422952;422953;422954;422955;422956;422957;422958;422959;422960;422961;422962;422963;422964;422965;422966;422967;422968;422969;422970;422971;422972;422973	422963			49	
TSYEEFTHK	1	Unmodified	1140.5088	0.50875357	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.01		9						2		3	2	3	3	27.146	24.504	2;3	0.00058064	20462	160511_QHF_FH_JSI11i_2	88.37	84.798			0.98206	0.97185	34.289	10	3	Median	1.0479	0.89183	61.89	3	2	Median	0.9458	1.1715	NaN	1	0	Median	1.0888	1.0845	4.9344	3	1	Median	0.83675	0.93553	22.504	3	0	Plateau	657900000	333070000	324830000	150130000	61521000	88605000	111990000	61370000	50625000	233930000	129990000	103940000	161850000	80189000	81666000	52097	3101	49065	314326;314327;314328;314329;314330;314331;314332;314333;314334;314335;314336	422974;422975;422976;422977;422978;422979;422980;422981;422982;422983;422984	422979			11	
TSYHLVLR	0	Unmodified	987.55016	0.55016488	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	42.506	33.307	3	0.0063883	18543	160513_QHF_FH_JSI10Kac_6	47.574	35.853			1.0564	1.0517	25.669	4	0	Median	1.0422	0.86715	NaN	1	0	Median	0.78447	0.93913	NaN	1	0	Median	1.5736	1.5359	NaN	1	0	Median	1.0707	1.1778	NaN	1	0	Median	23289000	10969000	12321000	5266100	2480300	2785700	9453100	4677500	4775600	5187700	2243900	2943800	3382600	1567100	1815500	52098	1543	49066	314337;314338;314339;314340	422985	422985			1	
TSYLTELIDR	0	Unmodified	1209.6241	0.62411768	5206;5721	Q9P289;Q9Y6E0	STK26;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	73.68	73.312	2	7.3342E-06	65294	160511_QHF_FH_JSI11i_3	107.21	62.124			1.1837	1.0911	2.497	3	1	Median	1.2359	1.0512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1837	1.1023	NaN	1	0	Median	1.0803	1.0911	NaN	1	1	Median	477280000	223600000	253680000	142580000	63872000	78711000	0	0	0	158190000	70441000	87746000	176510000	89289000	87220000	52099	5206;5721	49067	314341;314342;314343	422986;422987;422988	422986			2	
TSYMAQLMK	1	Unmodified	1071.5093	0.50928762	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	51.535	50.688	2	5.2914E-06	41665	160511_QHF_FH_JSI9i_3	116.25	110.94			0.89429	0.96036	12.945	4	0	Median	1.3143	1.0517	NaN	1	0	Median	0.92629	1.0362	NaN	1	0	Median	0.84198	0.802	NaN	1	0	Median	0.86339	0.89009	NaN	1	0	Median	963460000	489690000	473770000	95456000	37394000	58062000	134230000	67054000	67174000	248160000	132380000	115780000	485610000	252860000	232760000	52100	1580	49068	314344;314345;314346;314347;314348	422989;422990;422991;422992;422993;422994	422992			6	
TSYQPSSPGR	0	Unmodified	1078.5043	0.5043369	2494	Q14134	TRIM29	Tripartite motif-containing protein 29	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.757	12.337	2	1.9948E-06	10178	160511_QHF_FH_JSI12i_1	111.82	92.117			1.2452	1.121	22.169	4	0	Median	1.2686	1.052	NaN	1	0	Median	0.81875	0.96617	NaN	1	0	Median	1.2222	1.1944	NaN	1	0	Median	1.5443	1.6038	NaN	1	0	Median	218570000	105250000	113320000	45754000	22582000	23172000	58626000	32647000	25980000	55319000	21800000	33519000	58876000	28224000	30652000	52101	2494	49069	314349;314350;314351;314352	422995;422996;422997;422998	422997			3	
TTAAFQQGK	1	Unmodified	950.48214	0.48214489	925	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.5	4	5	2			2	3			3	4	5	4	13.951	10.97	2	7.0121E-07	9334	160511_QHF_FH_JSI11i_1	137.18	115.88			0.91808	0.92617	12.576	15	1	Median	1.0924	0.90971	11.98	3	0	Median	0.82218	0.97882	19.937	4	0	Median	0.92496	1.0159	5.3269	4	1	Linear	0.86971	0.96022	12.262	4	0	Median	3174400000	1684600000	1489800000	684470000	332980000	351480000	737280000	429930000	307360000	877990000	433760000	444230000	874660000	487950000	386700000	52102	925	49070	314353;314354;314355;314356;314357;314358;314359;314360;314361;314362;314363;314364;314365;314366;314367;314368	422999;423000;423001;423002;423003;423004;423005;423006;423007;423008;423009;423010;423011;423012;423013;423014;423015;423016;423017;423018;423019;423020	423000			22	
TTAAHGLELR	0	Unmodified	1067.5724	0.57235688	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	4.34		6	2						1	2	2	3	2	20.349	19.731	2;3	0.00057842	16925	160511_QHF_FH_JSI10i_2	73.233	54.794			1.0092	1.0314	25.618	8	0	Median	1.4646	1.2641	51.617	2	0	Median	1.06	1.2841	10.097	2	0	Median	0.97105	0.92057	12.816	3	0	Median	0.82621	0.93197	NaN	1	0	Median	674150000	316850000	357300000	90119000	41189000	48930000	119730000	52502000	67232000	378030000	170450000	207570000	86273000	52710000	33563000	52103	900	49071	314369;314370;314371;314372;314373;314374;314375;314376;314377	423021;423022;423023;423024;423025;423026;423027;423028;423029	423027			6	
TTAAHSLVGTPYYMSPER	0	Unmodified	1979.9411	0.9411115	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	50.979	50.287	3	3.0529E-07	44292	160511_QHF_FH_JSI11i_3	101.67	98.28			0.88918	0.89584	15.213	6	0	Median	1.3516	1.1361	NaN	1	0	Median	0.92121	1.1055	NaN	1	0	Median	0.89402	0.8659	1.5342	2	0	Median	0.79729	0.84062	12.271	2	0	Median	525610000	266510000	259100000	69933000	30970000	38963000	91769000	45244000	46525000	181630000	90799000	90831000	182270000	99497000	82777000	52104	3727	49072	314378;314379;314380;314381;314382;314383	423030;423031;423032;423033;423034;423035	423030			6	
TTAAMWALQTVEK	1	Unmodified	1448.7334	0.73335055	3148	Q6UW68	TMEM205	Transmembrane protein 205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	75.697	75.083	2	5.5949E-22	65172	160511_QHF_FH_JSI12i_3	196.44	179			1.176	1.2398	21.19	6	4	Median	1.7675	1.4898	NaN	1	1	Median	1.1516	1.3944	NaN	1	1	Median	1.2878	1.24	16.646	2	1	Median	0.89949	0.95067	13.046	2	1	Median	972650000	455960000	516690000	75699000	31671000	44028000	116200000	53590000	62613000	418610000	196490000	222120000	362130000	174200000	187930000	52105	3148	49073	314384;314385;314386;314387;314388;314389	423036;423037;423038;423039;423040;423041;423042	423041			7	
TTAARPTFEPAR	0	Acetyl (Protein N-term)	1358.6943	0.69426293	5172	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	1	0	1		By MS/MS	By MS/MS		2	0		2									1	1		34.081	33.401	2	8.4538E-07	29285	160511_QHF_FH_JSI10i_2	121.6	61.205			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52106	5172	49074	314390;314391	423043;423044	423044			2	
TTAGLCLLTWGGHWLYGK	1	Unmodified	2033.0193	0.019302239	2857	Q53H12	AGK	Acylglycerol kinase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	92.4	82.993	3	1.4143E-24	44821	160513_QHF_FH_JSI12Kac_6	153.75	138.59			1.1621	1.1805	36.819	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93317	0.90994	NaN	1	0	Median	1.4471	1.5316	NaN	1	0	Median	175970000	92852000	83122000	0	0	0	0	0	0	95038000	59367000	35671000	80936000	33485000	47451000	52107	2857	49075	314392;314393	423045;423046	423046			2	
TTAGSVDWTDQLGLR	0	Unmodified	1618.7951	0.79509919	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	72.769	72.256	2	2.7327E-15	65636	160511_QHF_FH_JSI11i_1	167.2	148.45			0.98601	0.93966	8.0504	4	0	Median	1.0703	0.8402	NaN	1	0	Median	0.78242	0.9323	NaN	1	0	Median	1.0658	1.0217	NaN	1	0	Median	0.91219	0.94708	NaN	1	0	Median	201560000	111750000	89815000	25949000	12946000	13002000	60558000	36546000	24012000	61887000	31550000	30336000	53169000	30705000	22464000	52108	4581	49076	314394;314395;314396;314397	423047;423048;423049;423050;423051;423052;423053	423047			7	
TTAHFPHPPQCTLLVK	1	Unmodified	1845.956	0.9559737	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.237	52.679	4	0.0068786	43937	160511_QHF_FH_JSI10i_3	39.685	34.926			0.76198	0.87595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76198	0.87595	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32298000	16165000	16133000	0	0	0	32298000	16165000	16133000	0	0	0	0	0	0	52109	3562	49077	314398	423054	423054			1	
TTANAIYCPPK	1	Unmodified	1234.6016	0.6016081	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			31.623	30.822	2	4.8363E-05	27550	160511_QHF_FH_JSI10i_1	95.775	83.247			0.84792	0.81866	34.431	2	0	Median	0.778	0.64175	NaN	1	0	Median	0.92414	1.0443	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56218000	21102000	35116000	24002000	8412700	15589000	32216000	12689000	19527000	0	0	0	0	0	0	52110	109	49078	314399;314400	423055;423056	423056			2	
TTAPVPEPTKPGDPR	1	Unmodified	1561.81	0.81002097	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	30.044	29.346	3	0.024853	26241	160511_QHF_FH_JSI12i_1	28.351	21.312			1.059	1.0921	8.652	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.059	1.0436	NaN	1	0	Median	1.101	1.1607	8.6206	2	0	Median	237210000	152000000	85204000	0	0	0	0	0	0	114400000	92745000	21653000	122810000	59257000	63551000	52111	3341	49079	314401;314402;314403	423057;423058;423059	423059			3	
TTAQVLIR	0	Unmodified	900.53927	0.53926584	1067	P15121;C9JRZ8	AKR1B1;AKR1B15	Aldose reductase;Aldo-keto reductase family 1 member B15	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.32	4	4	2				3	4		4	5	4	4	34.417	29.85	2	1.4104E-21	25143	160511_QHF_FH_JSI11i_2	187.55	97.873			0.92743	1.0204	17.888	17	0	Median	1.2903	1.1005	8.7142	4	0	Median	0.87433	1.0439	23.374	5	0	Median	0.91655	0.90695	14.876	4	0	Median	0.90702	1.0054	8.8177	4	0	Median	2584800000	1311800000	1273000000	446630000	190970000	255670000	672370000	356550000	315810000	837470000	421970000	415500000	628350000	342350000	285990000	52112	1067	49080	314404;314405;314406;314407;314408;314409;314410;314411;314412;314413;314414;314415;314416;314417;314418;314419;314420	423060;423061;423062;423063;423064;423065;423066;423067;423068;423069;423070;423071;423072;423073;423074;423075;423076;423077;423078;423079;423080;423081;423082;423083	423075			24	
TTAQYDQASTK	1	Unmodified	1212.5622	0.5622457	1660	P49454	CENPF	Centromere protein F	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.345	9.7651	2	0.00040579	7643	160511_QHF_FH_JSI12i_1	87.789	59.39			0.41362	0.37712	40.989	2	2	Median	0.61974	0.50391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27605	0.28223	NaN	1	1	Median	101780000	66526000	35251000	35145000	18881000	16264000	0	0	0	0	0	0	66632000	47645000	18987000	52113	1660	49081	314421;314422	423084;423085	423084			2	
TTARDQDLEPGAPSMGAK	1	Unmodified	1843.8734	0.87342586	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	31.067	30.227	3	0.00015531	26503	160511_QHF_FH_JSI10i_2	62.589	54.809			1.0536	1.044	22.224	4	0	Median	1.2803	1.1137	NaN	1	0	Median	1.2043	1.4771	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90333	0.9303	7.1841	2	0	Median	170840000	81257000	89582000	45534000	22436000	23099000	45433000	21385000	24048000	0	0	0	79872000	37437000	42435000	52114	878	49082	314423;314424;314425;314426	423086;423087;423088;423089;423090;423091	423090			6	
TTASTQMNVQSSR	0	Unmodified	1409.6569	0.65689115	3276	Q7Z4S6;O75037	KIF21A;KIF21B	Kinesin-like protein KIF21A;Kinesin-like protein KIF21B	yes	no	0	0	0	0		By MS/MS			1	0	1										1			15.041	14.796	2	4.4058E-10	12404	160511_QHF_FH_JSI10i_1	142.1	128.33			1.0471	1.2182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0471	1.2182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49966000	27505000	22461000	0	0	0	49966000	27505000	22461000	0	0	0	0	0	0	52115	3276	49083	314427	423092	423092			1	
TTASTSQVR	0	Acetyl (Protein N-term)	991.49344	0.49343786	794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				12.731	11.882	2	5.1061E-05	9292	160511_QHF_FH_JSI9i_1	93.143	67.693			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52116	794	49084	314428	423093	423093			1	
TTCMSSQGSDDEQIK	1	Unmodified	1685.6873	0.68726458	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		18.716	18.596	2	4.5195E-35	15963	160511_QHF_FH_JSI10i_1	167.44	148.7			0.74851	0.72	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74851	0.72	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20058000	12807000	7251300	0	0	0	0	0	0	20058000	12807000	7251300	0	0	0	52117	5192	49085	314429;314430	423094;423095	423095			2	
TTDDTTTDNYIAQGK	1	Unmodified	1642.7322	0.73222416	3249	Q7Z2T5	TRMT1L	TRMT1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	2	1	28.688	26.489	2	4.994E-117	23544	160511_QHF_FH_JSI10i_1	277.75	264.79			1.0263	1.0033	19.413	5	1	Median	1.3016	1.0604	NaN	1	0	Median	1.0263	1.1966	NaN	1	0	Median	0.86133	0.84382	24.486	2	1	Median	0.93378	0.96874	NaN	1	0	Median	236870000	124190000	112670000	52108000	25463000	26644000	72219000	41941000	30278000	59502000	28846000	30656000	53040000	27945000	25095000	52118	3249	49086	314431;314432;314433;314434;314435	423096;423097;423098;423099;423100;423101;423102;423103;423104	423102			9	
TTDFSDFLSIVGCTK	1	Unmodified	1689.792	0.79198764	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		101.25	101.16	2	3.4212E-30	91904	160511_QHF_FH_JSI10i_1	194.24	182.37			0.99288	1.1481	6.8799	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.98812	1.1481	NaN	1	0	Median	1.1155	1.1101	9.3348	2	1	Median	NaN	NaN	NaN	0	0	Median	461800000	212020000	249780000	0	0	0	168670000	79018000	89650000	293130000	133000000	160130000	0	0	0	52119	5296	49087	314436;314437;314438	423105;423106;423107	423106			3	
TTDGVYEGVAIGGDRYPGSTFMDHVLR	0	Unmodified	2912.3763	0.3763062	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.85	0.361		2	11							5	7	1		86.423	85.431	4	3.105E-21	70485	160511_QHF_FH_JSI9i_3	122.39	119.03			1.1485	1.171	9.539	13	3	Median	1.494	1.2104	10.014	5	0	Median	1.0023	1.171	10.022	7	3	Median	1.1476	1.0982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	594790000	280810000	313980000	176300000	73779000	102520000	376110000	182370000	193740000	42389000	24664000	17725000	0	0	0	52120	1798	49088	314439;314440;314441;314442;314443;314444;314445;314446;314447;314448;314449;314450;314451	423108;423109;423110;423111;423112;423113;423114;423115;423116;423117;423118;423119;423120	423117			11	
TTDGVYEGVAIGGDRYPGSTFMDHVLR	0	Oxidation (M)	2928.3712	0.37122082	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	1	1		By MS/MS			3	0			1								1			70.201	68.738	4	0.0030564	57596	160511_QHF_FH_JSI10i_3	35.32	32.542			0.88636	1.0351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.88636	1.0351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25216000	17562000	7653600	0	0	0	25216000	17562000	7653600	0	0	0	0	0	0	52121	1798	49088	314452	423121	423121		1483	1	
TTDGYLLR	0	Unmodified	937.4869	0.48689592	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.2	4	4	5				3	4	1	5	5	6	5	36.775	32.164	2	3.7677E-15	27480	160511_QHF_FH_JSI11i_2	200.12	135.35			0.99952	1.0413	14.125	19	2	Median	1.2899	1.0993	21.198	5	0	Median	0.87683	1.0722	2.2155	4	0	Linear	0.99952	0.99323	11.88	5	1	Median	0.97769	1.0413	5.943	5	1	Median	9750600000	4641500000	5109100000	2062200000	849400000	1212800000	1572900000	804010000	768870000	3750500000	1810500000	1940000000	2365000000	1177600000	1187400000	52122	1948	49089	314453;314454;314455;314456;314457;314458;314459;314460;314461;314462;314463;314464;314465;314466;314467;314468;314469;314470;314471;314472;314473	423122;423123;423124;423125;423126;423127;423128;423129;423130;423131;423132;423133;423134;423135;423136;423137;423138;423139;423140;423141;423142;423143;423144;423145;423146;423147;423148;423149;423150;423151;423152;423153;423154	423144			33	
TTDLLTDWEK	1	Unmodified	1220.5925	0.5924832	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	67.513	66.748	2	1.5119E-05	60369	160511_QHF_FH_JSI10i_1	100.48	71.75			0.96858	0.99854	11.22	7	1	Median	1.1661	0.97534	13.013	2	0	Median	0.85191	1.018	18.973	2	0	Median	0.89048	0.88007	NaN	1	0	Median	0.96105	1.0357	5.1667	2	1	Median	944210000	505650000	438560000	215020000	99291000	115730000	250630000	155420000	95207000	197380000	106920000	90461000	281190000	144020000	137170000	52123	2517	49090	314474;314475;314476;314477;314478;314479;314480	423155;423156;423157;423158;423159;423160;423161;423162;423163;423164;423165;423166;423167;423168;423169	423161			15	
TTDLSIQPASTDLK	1	Unmodified	1488.7672	0.7671531	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		52.349	51.679	2	1.7457E-05	45891	160511_QHF_FH_JSI9i_1	137.16	120.53			0.53749	0.50004	17.283	3	3	Plateau	0.69072	0.55969	NaN	1	1	Median	0.53749	0.62743	NaN	1	1	Median	0.47791	0.44674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134200000	83372000	50828000	42645000	24336000	18310000	41041000	27056000	13985000	50513000	31980000	18533000	0	0	0	52124	3405	49091	314481;314482;314483	423170;423171;423172;423173	423173			4	
TTDLSIQPLSADVK	1	Unmodified	1486.7879	0.78788854	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.607	63.968	2	7.9729E-18	58085	160511_QHF_FH_JSI11i_1	142.1	116.48			0.80123	0.82387	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80123	0.82387	NaN	1	0	Median	34408000	22343000	12066000	0	0	0	0	0	0	0	0	0	34408000	22343000	12066000	52125	3405	49092	314484;314485	423174;423175	423174			2	
TTDLSIQPPSADLK	1	Unmodified	1484.7722	0.77223848	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS				1	0	1									1				60.701	59.597	2	0.00043776	52872	160511_QHF_FH_JSI9i_1	96.604	43.879			2.3312	1.9795	NaN	1	1	Median	2.3312	1.9795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27667000	6623300	21043000	27667000	6623300	21043000	0	0	0	0	0	0	0	0	0	52126	3405	49093	314486	423176	423176			1	
TTDMAPSK	1	Unmodified	849.39022	0.39021834	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		9.0234	8.5955	2	0.0023906	6416	160511_QHF_FH_JSI10i_1	78.516	58.88			1.099	0.974	8.3391	2	1	Median	1.1312	0.91823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0678	1.0332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1161000000	551250000	609780000	636240000	277350000	358890000	0	0	0	524800000	273900000	250900000	0	0	0	52127	1298	49094	314487;314488;314489	423177;423178;423179	423178			3	
TTDRYIQQK	1	Unmodified	1151.5935	0.59348625	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			9.3844	8.8406	3	0.00054971	6599	160511_QHF_FH_JSI10i_3	76.827	46.572			0.93579	1.1164	46.688	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93579	1.1164	46.688	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134900000	67363000	67534000	0	0	0	134900000	67363000	67534000	0	0	0	0	0	0	52128	606	49095	314490;314491	423180;423181;423182	423181			3	
TTDRYVQQK	1	Unmodified	1137.5778	0.57783619	4414;2389	Q9BTC8;Q13330	MTA3;MTA1	Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	no	no	0	0	0	1		By MS/MS			3	0			1								1			7.0107	6.4898	3	0.0053722	4425	160511_QHF_FH_JSI10i_3	37.591	29.286			1.2785	1.4509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2785	1.4509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31743000	11239000	20504000	0	0	0	31743000	11239000	20504000	0	0	0	0	0	0	52129	4414;2389	49096	314492	423183	423183			1	
TTDTASVQNEAK	1	Unmodified	1263.5943	0.59427411	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	2	1	1	12.266	10.494	2	2.87E-53	8523	160511_QHF_FH_JSI11i_1	219.03	200.25			0.72365	0.84312	46.514	5	1	Median	0.67917	0.56028	NaN	1	0	Median	0.65996	0.74583	17.34	2	1	Median	1.9184	1.8803	NaN	1	0	Median	0.81606	0.85539	NaN	1	0	Median	529470000	255220000	274250000	112510000	63980000	48532000	106430000	59750000	46677000	189130000	68244000	120890000	121400000	63250000	58152000	52130	5411	49097	314493;314494;314495;314496;314497	423184;423185;423186;423187;423188;423189;423190;423191;423192	423184			9	
TTDVEGR	0	Unmodified	776.36645	0.36644643	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	5.4951	5.1712	2	0.019157	3168	160511_QHF_FH_JSI12i_1	58.782	31.986			0.90777	0.93078	2.7178	4	0	Median	1.1641	0.96724	NaN	1	0	Median	0.75931	0.91008	NaN	1	0	Median	0.93771	0.91951	NaN	1	0	Median	0.87879	0.94219	NaN	1	0	Median	959410000	506960000	452450000	162340000	83160000	79184000	266010000	136320000	129690000	248600000	119050000	129550000	282450000	168430000	114030000	52131	446	49098	314498;314499;314500;314501	423193	423193			1	
TTDVLTIK	1	Unmodified	889.51205	0.51204804	2107	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	38.527	37.797	2	0.019882	34321	160511_QHF_FH_JSI12i_1	46.334	16.958			0.69396	0.8289	13.366	3	0	Plateau	1.2955	1.0772	NaN	1	0	Median	0.69396	0.8289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85962	0.90273	NaN	1	0	Median	312090000	170730000	141360000	77258000	36672000	40585000	130650000	78929000	51718000	0	0	0	104190000	55132000	49056000	52132	2107	49099	314502;314503;314504	423194;423195	423194			2	
TTEAEEVFVPVLNIK	1	Unmodified	1687.9033	0.90325265	3310	Q86TP1	PRUNE	Protein prune homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	93.409	93.038	2	2.0928E-12	84349	160511_QHF_FH_JSI10i_1	115	95.243			0.89435	0.85479	39.34	3	2	Median	1.4492	1.2791	NaN	1	1	Median	0.54207	0.58243	NaN	1	1	Median	0.89435	0.85479	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24707000	14233000	10473000	5216800	2049800	3166900	10059000	7188400	2870800	9430700	4995000	4435600	0	0	0	52133	3310	49100	314505;314506;314507;314508;314509	423196;423197;423198;423199;423200;423201	423200			6	
TTECSNTFK	1	Unmodified	1086.4652	0.4651742	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.949	10.565	2	0.00026574	8206	160511_QHF_FH_JSI11i_1	83.948	69.791			1.0366	1.0021	16.434	4	0	Median	1.2149	0.97157	NaN	1	0	Median	0.89027	1.0335	NaN	1	0	Median	0.85371	0.83525	NaN	1	0	Median	1.207	1.2424	NaN	1	0	Median	269060000	138490000	130580000	41213000	17453000	23760000	70840000	37882000	32958000	84925000	49474000	35451000	72086000	33679000	38407000	52134	2801	49101	314510;314511;314512;314513	423202;423203;423204	423202			3	
TTEEALHASHGFMWYT	0	Unmodified	1879.8199	0.81993373	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		1							5	2	1	2	1	70.87	63.504	2;3	3.4033E-05	34788	160513_QHF_FH_JSI10Kac_6	89.992	85.891			1.043	1.1731	11.687	5	1	Median	1.5019	1.275	NaN	1	0	Median	0.99238	1.1769	NaN	1	0	Median	1.0662	1.0458	16.247	2	1	Median	1.043	1.1252	NaN	1	0	Median	277950000	130030000	147910000	47699000	19834000	27866000	120720000	56374000	64349000	51826000	26986000	24839000	57702000	26841000	30861000	52135	5180	49102	314514;314515;314516;314517;314518;314519	423205;423206;423207;423208;423209	423209			5	
TTEETSKPK	2	Unmodified	1019.5135	0.5135046	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.52	3.75	13	6					2			4	4	7	6	4.7251	3.4725	2;3	3.112E-07	2280	160511_QHF_FH_JSI11i_1	148.52	95.356			1.1231	1.1256	18.512	16	9	Median	1.3651	1.1189	4.6937	3	3	Median	0.67746	0.80229	40.262	3	2	Median	1.1231	1.1352	10.568	6	2	Median	1.0026	1.0992	15.389	4	2	Median	5982900000	2967300000	3015700000	945770000	404080000	541700000	1383100000	817590000	565490000	2040200000	933540000	1106700000	1613900000	812060000	801820000	52136	1181	49103	314520;314521;314522;314523;314524;314525;314526;314527;314528;314529;314530;314531;314532;314533;314534;314535;314536;314537;314538;314539;314540	423210;423211;423212;423213;423214;423215;423216;423217;423218;423219;423220;423221;423222;423223;423224;423225;423226;423227;423228;423229;423230;423231;423232;423233	423211			24	
TTEETSKPK	2	Acetyl (K)	1061.5241	0.52406928	1181	P20810	CAST	Calpastatin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	12	0					2							1	1	12.252	4.9716	2	6.4947E-07	4076	160513_QHF_FH_JSI11Kac_2	135.79	117.02			0.64034	0.64608	21.729	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58383	0.55406	NaN	1	0	Median	0.70231	0.75338	NaN	1	0	Median	16240000	10480000	5760000	0	0	0	0	0	0	13291000	8705300	4585600	2949600	1775100	1174500	52137	1181	49103	314541;314542	423234;423235	423235	1040		2	
TTEETSKPKDD	2	Unmodified	1249.5674	0.56739066	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	5.0648	4.7493	2;3	3.4327E-07	2693	160511_QHF_FH_JSI12i_1	132.88	116.91			0.90277	0.89315	9.7298	8	1	Median	1.1201	0.91265	16.384	2	1	Median	0.6957	0.81523	6.4711	2	0	Median	0.99021	0.96588	7.2467	2	0	Median	0.85157	0.89315	1.3013	2	0	Median	2952300000	1479000000	1473300000	666430000	287710000	378720000	820440000	475750000	344690000	612170000	278000000	334170000	853220000	437500000	415730000	52138	1181	49104	314543;314544;314545;314546;314547;314548;314549;314550	423236;423237;423238;423239;423240;423241;423242;423243;423244;423245;423246;423247;423248;423249	423242			14	
TTELPAADPFALAPFPSK	1	Unmodified	1871.9669	0.96691554	3188	Q6ZSR9		Uncharacterized protein FLJ45252	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	3	2	1	100.39	100.28	2;3	8.7745E-09	88614	160511_QHF_FH_JSI9i_1	138.02	110.54			0.8459	0.83246	10.124	7	1	Median	0.98216	0.79862	11.267	2	0	Median	0.69218	0.80727	5.7211	2	1	Median	0.94657	0.91186	12.884	2	0	Median	0.76874	0.76415	NaN	1	0	Median	129060000	70229000	58827000	28461000	15019000	13442000	33579000	21597000	11982000	51029000	25499000	25530000	15987000	8113500	7873700	52139	3188	49105	314551;314552;314553;314554;314555;314556;314557;314558	423250;423251;423252;423253;423254;423255;423256;423257;423258;423259	423257			10	
TTELVNK	1	Unmodified	803.43888	0.43888309	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.662	12.243	2	0.0157	9474	160511_QHF_FH_JSI9i_1	64.236	39.417			1.0046	1.1139	24.343	4	0	Median	1.495	1.2158	NaN	1	0	Median	0.94582	1.0936	NaN	1	0	Median	0.73679	0.71045	NaN	1	0	Median	1.0671	1.1346	NaN	1	0	Median	4207400000	2119400000	2088000000	870450000	348940000	521510000	1184500000	618110000	566400000	1149900000	634800000	515150000	1002500000	517560000	484980000	52140	3896	49106	314559;314560;314561;314562	423260;423261;423262;423263	423263			4	
TTEMETIYDLGTK	1	Unmodified	1500.7018	0.70177565	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	65.495	64.856	2;3	1.1194E-40	59125	160511_QHF_FH_JSI12i_1	232	221.63			0.67302	0.89225	18.547	9	0	Linear	0.93081	0.76388	21.968	2	0	Median	0.63869	0.76468	18.573	3	0	Plateau	0.85661	0.81153	19.881	2	0	Median	0.82605	0.86769	26.525	2	0	Median	2784600000	1542500000	1242100000	624020000	308360000	315660000	860190000	526240000	333950000	615390000	310340000	305050000	684980000	397560000	287430000	52141	5487	49107	314563;314564;314565;314566;314567;314568;314569;314570;314571	423264;423265;423266;423267;423268;423269;423270;423271;423272;423273	423267			10	
TTEMMPVYLDLNK	1	Unmodified	1553.747	0.74695171	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	79.901	79.469	2	0.0025577	72344	160511_QHF_FH_JSI11i_1	66.486	55.389			1.1522	1.145	19.055	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3972	1.3102	NaN	1	1	Median	0.9502	1.0007	NaN	1	1	Median	46310000	19840000	26470000	0	0	0	0	0	0	24639000	6277000	18362000	21671000	13563000	8108100	52142	5332	49108	314572;314573	423274;423275	423274			2	
TTESHMDWEK	1	Unmodified	1262.5238	0.52375171	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	19.994	19.206	2;3	0.01111	16083	160511_QHF_FH_JSI12i_2	47.198	38.335			0.48565	0.6028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48565	0.6028	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48209000	26912000	21298000	0	0	0	48209000	26912000	21298000	0	0	0	0	0	0	52143	1117	49109	314574;314575	423276;423277	423276			2	
TTETFVK	1	Acetyl (Protein N-term)	866.43855	0.43854874	4344	Q9BQ15	NABP2	SOSS complex subunit B1	no	no	0	1	0	0	By matching		By matching		1	0	2									1		1		37.489	36.744	1	1			NaN	NaN			1.0416	0.92123	12.083	2	0	Median	1.0307	0.84579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0526	1.0034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66169000	34731000	31437000	27080000	14369000	12711000	0	0	0	39089000	20363000	18726000	0	0	0	52144	4344	49110	314576;314577					0	
TTETQVFVATPQK	1	Unmodified	1448.7511	0.75110911	1666	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	41.372	40.89	2	6.2331E-05	37150	160511_QHF_FH_JSI12i_1	127.56	107.8			1.0126	1.0358	11.309	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98182	0.95623	NaN	1	0	Median	1.0443	1.1221	NaN	1	0	Median	86040000	44814000	41226000	0	0	0	0	0	0	42387000	22283000	20104000	43653000	22531000	21122000	52145	1666	49111	314578;314579	423278;423279	423279			1	
TTETQVLVASAQK	1	Unmodified	1374.7355	0.73545904	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	5.89	10	6	1		3	6	6			4	12	8	8	42.962	38.055	2;3	1.4483E-32	34227	160511_QHF_FH_JSI12i_1	186.46	132.71			0.90127	0.93609	33.103	27	10	Median	1.1222	0.91299	3.5347	2	0	Median	0.7639	0.86896	42.04	11	5	Median	1.0034	0.9929	23.029	7	1	Median	1.1113	1.1685	33.468	7	4	Median	1478100000	764400000	713670000	263190000	126830000	136360000	478850000	251490000	227370000	451120000	234650000	216470000	284910000	151440000	133470000	52146	1012	49112	314580;314581;314582;314583;314584;314585;314586;314587;314588;314589;314590;314591;314592;314593;314594;314595;314596;314597;314598;314599;314600;314601;314602;314603;314604;314605;314606;314607;314608;314609;314610;314611	423280;423281;423282;423283;423284;423285;423286;423287;423288;423289;423290;423291;423292;423293;423294;423295;423296;423297;423298;423299;423300;423301;423302;423303;423304;423305;423306;423307;423308;423309;423310;423311;423312;423313;423314;423315;423316;423317	423285			34	
TTETQVLVASAQKK	2	Unmodified	1502.8304	0.83042206	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	32.312	31.801	3	0.00094079	26870	160511_QHF_FH_JSI12i_3	55.335	48.502			0.68456	0.76276	5.1987	2	1	Median	NaN	NaN	NaN	0	0	Median	0.65373	0.79132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71684	0.73523	NaN	1	0	Median	92675000	51335000	41340000	0	0	0	26688000	19380000	7307400	0	0	0	65987000	31954000	34033000	52147	1012	49113	314612;314613;314614	423318;423319;423320	423320			3	
TTEVGSVSEVK	1	Acetyl (Protein N-term)	1176.5874	0.58739782	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	1	0	0			By MS/MS		11	0				1								1		49.162	39.884	2	0.0083762	16113	160513_QHF_FH_JSI11Kac_1	47.823	24.994			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52148	339	49114	314615	423321	423321			1	
TTEVGSVSEVKK	2	Acetyl (Protein N-term)	1304.6824	0.68236084	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	1	0	1	By MS/MS				1	0	1									1				33.131	31.866	2	6.0261E-06	27904	160511_QHF_FH_JSI9i_1	91.549	76.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52149	339	49115	314616	423322	423322			1	
TTEVTGTGLGR	0	Unmodified	1090.5619	0.56185177	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.652	21.149	2	0.01417	18555	160511_QHF_FH_JSI12i_1	52.579	41.068			0.83627	0.89797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83627	0.89797	NaN	1	1	Median	39930000	17740000	22189000	0	0	0	0	0	0	0	0	0	39930000	17740000	22189000	52150	3819	49116	314617	423323	423323			1	
TTFDEAMADLHTLSEDSYK	1	Unmodified	2172.9521	0.95212969	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.3	1	9								2	3	2	3	93.394	92.983	2;3	5.2353E-162	82435	160511_QHF_FH_JSI10i_2	262.66	258.13			0.94792	1.0494	11.162	9	1	Median	1.3876	1.1677	6.7429	2	0	Median	0.83056	0.98567	9.6843	3	1	Median	0.88599	0.89914	7.1627	2	0	Median	0.97239	1.068	2.4932	2	0	Median	4397600000	2244000000	2153600000	702640000	313000000	389640000	810370000	429690000	380680000	995100000	595990000	399100000	1889500000	905330000	984170000	52151	1385	49117	314618;314619;314620;314621;314622;314623;314624;314625;314626;314627	423324;423325;423326;423327;423328;423329;423330;423331;423332;423333;423334;423335;423336;423337;423338;423339;423340;423341;423342;423343;423344;423345;423346;423347;423348;423349;423350	423346			27	
TTFEDLIQR	0	Unmodified	1121.5717	0.57168818	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.84		5						1		2	1	1	2	69.369	66.545	2	1.9877E-10	57577	160511_QHF_FH_JSI12i_2	147.19	90.008			0.97194	0.95555	12.933	5	4	Median	1.099	0.9214	5.1458	2	2	Median	0.78588	0.95706	NaN	1	1	Median	0.7464	0.76526	NaN	1	0	Median	0.97194	1.0906	NaN	1	1	Median	1254300000	686630000	567690000	239440000	130690000	108750000	263820000	144780000	119030000	479530000	272950000	206580000	271530000	138200000	133330000	52152	636	49118	314628;314629;314630;314631;314632;314633	423351;423352;423353;423354;423355;423356;423357	423352			7	
TTFFGGNSISMIDYLIWPWFER	0	Unmodified	2679.2832	0.28318108	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.23	96.505	2;3	0	57069	160513_QHF_FH_JSI10Kac_6	380.06	346.37			1.0149	1.1863	1.3434	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0149	1.1863	1.3434	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	314880000	162170000	152710000	0	0	0	314880000	162170000	152710000	0	0	0	0	0	0	52153	2093	49119	314634;314635	423358;423359;423360	423359			2	
TTFFNVSSSTLTSK	1	Unmodified	1518.7566	0.75658842	530	O75449	KATNA1	Katanin p60 ATPase-containing subunit A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			15	0								3		2	1			76.138	65.631	2	0.0020485	33883	160513_QHF_FH_JSI9Kac_5	78.908	55.057			1.0657	0.90045	NaN	1	1	Median	1.0657	0.90045	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1354200	545500	808700	1354200	545500	808700	0	0	0	0	0	0	0	0	0	52154	530	49120	314636;314637;314638	423361;423362;423363	423361			3	
TTFLHISK	1	Unmodified	945.52837	0.5283668	250	O15120	AGPAT2	1-acyl-sn-glycerol-3-phosphate acyltransferase beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		10.8	6.37			2						3	2	2	1		41.794	35.721	2;3	0.0036803	19830	160513_QHF_FH_JSI10Kac_6	56.378	40.797			0.94129	0.90801	20.832	5	0	Median	1.2677	1.0483	19.936	2	0	Median	0.66621	0.77225	20.089	2	0	Median	0.94129	0.90801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86201000	43765000	42436000	41255000	20152000	21103000	35725000	19126000	16599000	9220500	4486500	4734000	0	0	0	52155	250	49121	314639;314640;314641;314642;314643	423364;423365	423365			2	
TTFLYLVNFNK	1	Unmodified	1358.7234	0.72343779	5306	Q9UHN6	TMEM2	Transmembrane protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2		1	2	2	90.193	85.496	2	6.953E-46	43469	160513_QHF_FH_JSI11Kac_6	205.36	180.22			0.83022	0.82804	17.602	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93384	0.87072	19.122	2	1	Median	0.73762	0.77769	20.885	2	1	Median	376400000	193950000	182460000	0	0	0	0	0	0	197990000	94225000	103770000	178410000	99722000	78687000	52156	5306	49122	314644;314645;314646;314647;314648	423366;423367;423368;423369;423370;423371	423369			6	
TTFMQAIK	1	Unmodified	938.48954	0.48953845	4986	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.67	0.471		1	2							1	1		1	47.748	46.793	2	0.004596	39696	160511_QHF_FH_JSI12i_3	68.214	56.445			1.4691	1.3002	16.944	3	1	Median	1.5175	1.3002	NaN	1	1	Median	0.91583	1.0484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4691	1.4646	NaN	1	0	Median	175860000	68759000	107100000	37903000	13695000	24208000	33718000	18934000	14784000	0	0	0	104240000	36130000	68112000	52157	4986	49123	314649;314650;314651	423372;423373;423374	423374			3	
TTFQENTQSISVR	0	Unmodified	1509.7423	0.74233534	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	6	5.66		2					1				2		1	41.413	40.042	2	0.00039525	34157	160511_QHF_FH_JSI12i_2	94.801	76.49			1.2843	1.3985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2843	1.3985	NaN	1	1	Median	31119000	14602000	16517000	0	0	0	0	0	0	0	0	0	31119000	14602000	16517000	52158	28	49124	314652;314653;314654	423375;423376;423377	423375			3	
TTFQLQVR	0	Unmodified	991.54508	0.5450795	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	46.27	46.029	2	0.015932	39325	160511_QHF_FH_JSI12i_3	48.561	29.779			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52159	1136	49125	314655	423378	423378			1	
TTFTFHQFSQWLK	1	Unmodified	1669.8253	0.8252771	4432	Q9BU23	LMF2	Lipase maturation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	86.939	82.736	3	1.7123E-08	41384	160513_QHF_FH_JSI11Kac_6	105.65	92.53			0.84599	0.87062	15.165	5	0	Median	0.76269	0.63453	NaN	1	0	Median	0.77404	0.87492	NaN	1	0	Median	0.88735	0.84425	4.3488	2	0	Median	0.87296	0.93929	NaN	1	0	Median	315250000	164800000	150450000	13156000	5595400	7560400	19923000	11998000	7924600	140380000	70868000	69508000	141800000	76339000	65459000	52160	4432	49126	314656;314657;314658;314659;314660;314661;314662	423379;423380;423381;423382;423383;423384;423385;423386;423387;423388;423389	423384			11	
TTFTVAQNER	0	Unmodified	1165.5728	0.57275081	953;1699	P0DMN0;P0DMM9;P50225;P50226	SULT1A4;SULT1A3;SULT1A1;SULT1A2	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.17	4.41		4	1				1			1	1	2	2	28.955	25.995	2	9.1716E-10	21716	160511_QHF_FH_JSI11i_2	136.99	120.21			0.69482	0.79286	14.381	4	1	Median	NaN	NaN	NaN	0	0	Median	0.63007	0.77395	NaN	1	1	Median	0.77883	0.7812	24.63	2	0	Median	0.74573	0.81222	NaN	1	0	Median	199610000	108300000	91318000	0	0	0	45805000	28391000	17414000	115870000	60583000	55287000	37938000	19322000	18617000	52161	953;1699	49127	314663;314664;314665;314666;314667;314668	423390;423391;423392;423393;423394;423395;423396	423394			7	
TTFYTALGR	0	Unmodified	1028.5291	0.52909508	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	48.175	47.572	2	0.00015637	40747	160511_QHF_FH_JSI12i_3	93.429	28.671			1.1772	1.1037	6.7766	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.88462	1.0072	NaN	1	0	Median	1.1806	1.1037	NaN	1	1	Median	1.1396	1.1497	NaN	1	1	Median	222340000	100160000	122190000	0	0	0	31892000	17657000	14236000	95218000	39709000	55509000	95235000	42791000	52444000	52162	5327	49128	314669;314670;314671;314672	423397;423398;423399;423400;423401	423401			5	
TTGAFWQTWK	1	Unmodified	1224.5928	0.59275797	4863	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	67.473	66.656	2	5.0712E-05	55975	160511_QHF_FH_JSI10i_3	92.838	83.975			0.97314	0.97832	7.3051	4	0	Median	1.2269	0.99036	NaN	1	0	Median	0.91727	1.0908	NaN	1	0	Median	0.98968	0.91601	NaN	1	0	Median	0.95687	0.96643	NaN	1	0	Median	335930000	160950000	174990000	54802000	22358000	32444000	55433000	23838000	31595000	86638000	45069000	41569000	139060000	69682000	69378000	52163	4863	49129	314673;314674;314675;314676	423402;423403;423404;423405;423406;423407;423408	423404			7	
TTGEENGVEAEEWGK	1	Unmodified	1634.706	0.70600941	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	35.55	34.843	2	1.138E-28	31282	160511_QHF_FH_JSI11i_1	232.6	207.13			0.9887	0.9556	21.08	5	5	Median	0.99161	0.82168	21.513	2	2	Median	0.7247	0.86119	NaN	1	1	Median	0.9887	0.9556	NaN	1	1	Median	1.2117	1.264	NaN	1	1	Median	735610000	376530000	359080000	234250000	125130000	109120000	179060000	93277000	85783000	147530000	78813000	68715000	174770000	79307000	95461000	52164	133	49130	314677;314678;314679;314680;314681;314682	423409;423410;423411;423412;423413;423414	423409			6	
TTGEGTSLR	0	Unmodified	920.45632	0.45632407	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	8.94	8.563	2	0.046618	6238	160511_QHF_FH_JSI11i_2	36.557	24.126			0.86835	0.90137	8.2213	4	0	Median	1.1413	0.98184	NaN	1	0	Median	0.65851	0.80499	NaN	1	0	Median	0.8678	0.88927	NaN	1	0	Median	0.8689	0.91364	NaN	1	0	Median	243980000	124940000	119040000	44515000	22544000	21971000	32257000	18150000	14107000	57803000	29234000	28569000	109400000	55009000	54392000	52165	2545	49131	314683;314684;314685;314686	423415	423415			1	
TTGEVVSGVVSK	1	Unmodified	1161.6241	0.62411768	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	30.853	30.286	2	0.00067413	27243	160511_QHF_FH_JSI12i_1	80.763	54.379			1.6953	1.7922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6953	1.7922	NaN	1	1	Median	91034000	42807000	48227000	0	0	0	0	0	0	0	0	0	91034000	42807000	48227000	52166	2485	49132	314687	423416	423416			1	
TTGFGMIYDSLDYAK	1	Unmodified	1680.7705	0.77052392	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	5.41	9	10	4					1	4	5	8	8	7	88.69	86.606	2;3	3.9651E-139	42159	160513_QHF_FH_JSI11Kac_6	283.43	255.25			0.99048	1.0392	20.591	26	4	Median	1.2427	1.0331	7.5332	5	0	Median	0.91336	1.0938	32.802	7	2	Median	0.99384	0.9682	11.509	7	1	Median	0.93849	0.99954	15.66	7	1	Median	11107000000	5663700000	5443300000	2403600000	1117700000	1285900000	2668200000	1421800000	1246400000	3291600000	1623300000	1668400000	2743600000	1500900000	1242600000	52167	2025	49133	314688;314689;314690;314691;314692;314693;314694;314695;314696;314697;314698;314699;314700;314701;314702;314703;314704;314705;314706;314707;314708;314709;314710;314711;314712;314713;314714;314715	423417;423418;423419;423420;423421;423422;423423;423424;423425;423426;423427;423428;423429;423430;423431;423432;423433;423434;423435;423436;423437;423438;423439;423440;423441;423442;423443;423444;423445;423446;423447;423448;423449;423450;423451;423452;423453;423454;423455;423456;423457;423458;423459;423460;423461;423462;423463;423464;423465;423466;423467;423468;423469;423470;423471;423472;423473;423474;423475;423476;423477;423478;423479;423480;423481;423482;423483;423484;423485;423486;423487;423488;423489;423490;423491;423492;423493;423494;423495;423496;423497	423447			81	
TTGFGMIYDSLDYAK	1	Oxidation (M)	1696.7654	0.76543854	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.81	4	4	1				1	5	3	5	4	5	4	78.963	73.879	2;3	4.3341E-33	38295	160513_QHF_FH_JSI9Kac_6	172.11	152.46			1.1068	1.0957	17.77	17	2	Median	1.296	1.0546	19.895	5	0	Median	0.97202	1.1445	12.242	4	1	Median	1.0795	1.0829	27.19	4	1	Median	0.93457	1.0847	9.911	4	0	Linear	961560000	450040000	511520000	209840000	86532000	123310000	249880000	130490000	119390000	253700000	123670000	130030000	248140000	109350000	138790000	52168	2025	49133	314716;314717;314718;314719;314720;314721;314722;314723;314724;314725;314726;314727;314728;314729;314730;314731;314732;314733	423498;423499;423500;423501;423502;423503;423504;423505;423506;423507;423508;423509;423510;423511;423512;423513;423514;423515;423516;423517;423518;423519;423520;423521;423522;423523;423524;423525	423522		1688	28	
TTGIVETHFTFK	1	Unmodified	1379.7085	0.70851601	915;818;2049	P04899;P08754;P63096	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.56		8	7						9	6	5	7	6	57.512	53.361	2;3	1.3387E-24	27969	160513_QHF_FH_JSI12Kac_6	162.22	162.22			0.94171	1.0225	20.504	23	4	Median	0.82011	0.69693	12.161	5	0	Median	0.86109	1.0225	9.4448	5	0	Median	1.223	1.1945	14.611	7	4	Median	1.0522	1.0776	10.319	6	0	Median	5653100000	2575700000	3077400000	412670000	235160000	177510000	887410000	477350000	410060000	2072900000	922940000	1150000000	2280100000	940260000	1339900000	52169	818;915;2049	49134	314734;314735;314736;314737;314738;314739;314740;314741;314742;314743;314744;314745;314746;314747;314748;314749;314750;314751;314752;314753;314754;314755;314756;314757	423526;423527;423528;423529;423530;423531;423532;423533;423534;423535;423536;423537;423538;423539;423540;423541;423542;423543;423544;423545;423546;423547;423548;423549;423550;423551;423552;423553;423554;423555;423556;423557;423558;423559;423560;423561;423562;423563;423564;423565;423566;423567;423568;423569	423563			44	
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	Oxidation (M)	3198.6019	0.60194904	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.39	3.35		14	15						2	6	9	10	6	88.093	87.255	3;4;5	1.783E-107	40004	160513_QHF_FH_JSI9Kac_6	230.12	212.03			0.99962	1.038	20.8	29	12	Median	1.3106	1.0997	16.345	6	1	Median	1.0078	1.2463	8.4975	9	3	Median	0.92083	0.8409	21.564	10	6	Median	0.91146	0.97347	13.339	4	2	Median	6017400000	2911900000	3105400000	2890800000	1077500000	1813400000	2264900000	1290900000	973950000	570540000	344730000	225820000	291100000	198810000	92292000	52170	1916;2062	49135	314758;314759;314760;314761;314762;314763;314764;314765;314766;314767;314768;314769;314770;314771;314772;314773;314774;314775;314776;314777;314778;314779;314780;314781;314782;314783;314784;314785;314786;314787;314788	423570;423571;423572;423573;423574;423575;423576;423577;423578;423579;423580;423581;423582;423583;423584;423585;423586;423587;423588;423589;423590;423591;423592;423593;423594;423595;423596;423597;423598;423599;423600;423601;423602;423603;423604;423605;423606;423607;423608;423609;423610;423611;423612;423613;423614;423615;423616;423617;423618;423619;423620	423612		1584	47	
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	0	Unmodified	3182.607	0.60703441	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.19	2.87	1	43	59						5	28	24	29	27	99.208	98.51	2;3;4;5	0	41461	160513_QHF_FH_JSI9Kac_6	350.97	333.25			1.1392	1.1224	21.707	101	35	Median	1.3639	1.1737	16.657	27	10	Median	1.0597	1.2752	23.822	23	7	Median	1.0779	1.0401	23.787	26	9	Median	1.0259	1.0824	18.524	25	9	Median	15469000000	6736900000	8732000000	4191000000	1654200000	2536700000	3105000000	1401700000	1703200000	5326000000	2370800000	2955200000	2847100000	1310200000	1536900000	52171	1916;2062	49135	314789;314790;314791;314792;314793;314794;314795;314796;314797;314798;314799;314800;314801;314802;314803;314804;314805;314806;314807;314808;314809;314810;314811;314812;314813;314814;314815;314816;314817;314818;314819;314820;314821;314822;314823;314824;314825;314826;314827;314828;314829;314830;314831;314832;314833;314834;314835;314836;314837;314838;314839;314840;314841;314842;314843;314844;314845;314846;314847;314848;314849;314850;314851;314852;314853;314854;314855;314856;314857;314858;314859;314860;314861;314862;314863;314864;314865;314866;314867;314868;314869;314870;314871;314872;314873;314874;314875;314876;314877;314878;314879;314880;314881;314882;314883;314884;314885;314886;314887;314888;314889;314890;314891;314892;314893;314894;314895;314896	423621;423622;423623;423624;423625;423626;423627;423628;423629;423630;423631;423632;423633;423634;423635;423636;423637;423638;423639;423640;423641;423642;423643;423644;423645;423646;423647;423648;423649;423650;423651;423652;423653;423654;423655;423656;423657;423658;423659;423660;423661;423662;423663;423664;423665;423666;423667;423668;423669;423670;423671;423672;423673;423674;423675;423676;423677;423678;423679;423680;423681;423682;423683;423684;423685;423686;423687;423688;423689;423690;423691;423692;423693;423694;423695;423696;423697;423698;423699;423700;423701;423702;423703;423704;423705;423706;423707;423708;423709;423710;423711;423712;423713;423714;423715;423716;423717;423718;423719;423720;423721;423722;423723;423724;423725;423726;423727;423728;423729;423730;423731;423732;423733;423734;423735;423736;423737;423738;423739;423740;423741;423742;423743;423744;423745;423746;423747;423748;423749;423750;423751;423752;423753;423754;423755;423756;423757;423758;423759;423760;423761;423762;423763;423764;423765;423766;423767;423768;423769	423745			147	
TTGKPIEASIR	1	Unmodified	1171.6561	0.65608651	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	18.148	17.984	2;3	0.0075853	14929	160511_QHF_FH_JSI11i_3	66.056	45.109			1.3346	1.1608	11.633	5	0	Median	1.3526	1.1608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2753	1.1945	4.6694	2	0	Median	1.1634	1.1832	22.673	2	0	Median	2792000000	1381400000	1410700000	296340000	116640000	179700000	0	0	0	1569300000	779390000	789910000	926380000	485330000	441040000	52172	891	49136	314897;314898;314899;314900;314901;314902	423770;423771;423772;423773	423771			4	
TTGKPIEASIR	1	Acetyl (K)	1213.6667	0.6666512	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.503	37.063	2	0.050456	21925	160513_QHF_FH_JSI11Kac_4	42.743	31.592			0.26799	0.27017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26799	0.27017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4195000	3270200	924860	0	0	0	0	0	0	4195000	3270200	924860	0	0	0	52173	891	49136	314903	423774	423774			1	
TTGLEEAAEAETAK	1	Unmodified	1419.6729	0.67291837	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.674	39.042	2	3.4384E-30	34997	160511_QHF_FH_JSI10i_1	193.73	153.38			1.1493	1.33	24.345	3	1	Plateau	1.0215	0.84564	NaN	1	1	Median	1.1493	1.3717	NaN	1	0	Median	1.1596	1.1302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	260120000	116390000	143730000	45981000	22486000	23495000	131320000	52134000	79185000	82817000	41767000	41049000	0	0	0	52174	2089	49137	314904;314905;314906;314907	423775;423776;423777;423778;423779	423778			5	
TTGLVGLAVCNTPHER	0	Unmodified	1723.8676	0.86755262	2756	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6	5.79		1	2						1	1	2	1		52.627	49.168	3	2.0282E-05	40293	160511_QHF_FH_JSI9i_3	86.548	82.603			0.91503	1.0869	32.513	4	1	Median	1.667	1.3655	NaN	1	0	Median	0.91503	1.0869	5.439	2	0	Median	0.65264	0.63697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	193260000	90455000	102810000	40007000	14668000	25339000	147420000	71743000	75681000	5832000	4043100	1788800	0	0	0	52175	2756	49138	314908;314909;314910;314911	423780;423781;423782;423783;423784;423785;423786;423787	423785			8	
TTGNATVDHLSK	1	Unmodified	1242.6204	0.62042929	2246	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	16.06	15.457	2	0.00013285	12529	160511_QHF_FH_JSI12i_2	83	55.258			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52176	2246	49139	314912;314913	423788;423789	423788			2	
TTGQVVAMK	1	Unmodified	933.49535	0.49535211	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			2	1	2	2	20.471	18.388	2	0.00016949	15642	160511_QHF_FH_JSI11i_1	87.639	60.502			1.1525	0.98967	15.655	5	3	Median	1.1424	0.95216	5.4645	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1981	1.1636	4.265	2	1	Median	0.76302	0.81371	NaN	1	1	Median	1731100000	953690000	777400000	464570000	245230000	219340000	0	0	0	590820000	307130000	283700000	675690000	401330000	274360000	52177	850	49140	314914;314915;314916;314917;314918;314919;314920	423790;423791;423792;423793;423794;423795;423796	423790			7	
TTGQVVAMKK	2	Unmodified	1061.5903	0.59031513	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			11							2	3	3	3	13.038	12.69	2;3	2.4634E-05	10150	160511_QHF_FH_JSI11i_3	113.18	90.684			0.48294	0.51694	80.985	11	9	Median	0.90851	0.73495	86.46	2	2	Median	0.44199	0.51694	112.68	3	2	Median	0.33815	0.31764	104.63	3	3	Plateau	0.75327	0.74118	66.796	3	2	Median	1105700000	634390000	471300000	51327000	25345000	25982000	189800000	98128000	91667000	249650000	139560000	110090000	614920000	371350000	243560000	52178	850	49141	314921;314922;314923;314924;314925;314926;314927;314928;314929;314930;314931	423797;423798;423799;423800;423801;423802;423803;423804;423805;423806;423807	423798			11	
TTGQVVAMKK	2	Acetyl (K);Oxidation (M)	1119.5958	0.59579444	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	0.667						7	1	1		2	2	2	3	21.459	12.71	2;3	1.8395E-08	5397	160513_QHF_FH_JSI9Kac_3	140.45	100.44			1.062	1.1169	9.5965	9	0	Median	1.4413	1.2036	18.627	2	0	Median	0.89662	1.0738	2.1468	2	0	Median	1.1786	1.1482	3.9174	2	0	Median	1.0555	1.1479	10.207	3	0	Median	358080000	178530000	179550000	111300000	47557000	63741000	65566000	37797000	27769000	39602000	19588000	20014000	141620000	73589000	68028000	52179	850	49141	314932;314933;314934;314935;314936;314937;314938;314939;314940	423808;423809;423810;423811;423812;423813;423814;423815;423816	423810	506	368	9	
TTGQVVAMKK	2	Acetyl (K)	1103.6009	0.60087982	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.786						4	3	2		1	3	2	3	33.513	23.391	2	1.8091E-32	5879	160513_QHF_FH_JSI9Kac_3	193.38	176.14			1.0006	1.0838	6.5296	9	0	Median	1.4376	1.1777	NaN	1	0	Median	0.90892	1.0838	5.0344	3	0	Median	1.0003	0.99257	3.4365	2	0	Median	1.0457	1.1366	3.932	3	0	Plateau	641950000	309480000	332470000	209910000	86894000	123010000	161670000	85613000	76052000	103080000	54885000	48193000	167300000	82092000	85212000	52180	850	49141	314941;314942;314943;314944;314945;314946;314947;314948;314949	423817;423818;423819;423820;423821;423822;423823;423824;423825;423826;423827	423821	506		11	
TTGSPENEILTVHYLLEQIK	1	Unmodified	2284.1951	0.19507758	3248	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		101.35	101.27	3	1.4434E-16	88939	160511_QHF_FH_JSI11i_2	162.49	149.26			1.261	1.2565	9.7563	3	3	Median	1.4289	1.2435	NaN	1	1	Median	1.2266	1.4797	NaN	1	1	Median	1.261	1.2565	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	465930000	178330000	287590000	105380000	38234000	67147000	157020000	63854000	93162000	203530000	76247000	127290000	0	0	0	52181	3248	49142	314950;314951;314952	423828;423829;423830	423829			3	
TTGTPPDSSLVTYELHSRPEQDK	1	Unmodified	2557.2296	0.22962518	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	3.3		9	4					1		3	2	6	3	52.156	50.772	3;4	8.1825E-18	44650	160511_QHF_FH_JSI10i_2	139.95	132.41			0.94496	0.931	11.537	14	3	Median	1.0516	0.90931	10.193	3	2	Median	0.85308	1.0521	2.3904	2	0	Median	1.0242	0.99835	12.41	6	1	Median	0.78543	0.84732	4.1648	3	0	Plateau	2334400000	1225500000	1108900000	278880000	137960000	140920000	460380000	242490000	217890000	954120000	484650000	469460000	641030000	360370000	280660000	52182	2441	49143	314953;314954;314955;314956;314957;314958;314959;314960;314961;314962;314963;314964;314965;314966	423831;423832;423833;423834;423835;423836;423837;423838;423839;423840;423841;423842;423843;423844;423845;423846;423847;423848;423849;423850;423851	423847			19	
TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR	0	Oxidation (M)	3172.5322	0.53215491	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	1	0			By MS/MS		3	0			1									1		86.445	86.445	4	2.1222E-06	76972	160511_QHF_FH_JSI11i_3	49.888	43.384			1.1599	1.081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1599	1.081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73510000	33829000	39681000	0	0	0	0	0	0	73510000	33829000	39681000	0	0	0	52183	1524;1941	49144	314967	423852	423852		1202	1	
TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR	0	Unmodified	3156.5372	0.53724029	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		2	4							1		2	3	93.559	93.364	3;4	9.4125E-33	83087	160511_QHF_FH_JSI11i_3	139.63	133.85			1.1124	1.0771	5.5494	5	1	Median	1.1979	1.0308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1124	1.0771	NaN	1	0	Median	1.1058	1.1199	5.2601	3	1	Median	1309300000	577640000	731640000	59209000	25449000	33761000	0	0	0	483700000	210780000	272920000	766380000	341420000	424960000	52184	1524;1941	49144	314968;314969;314970;314971;314972;314973	423853;423854;423855;423856;423857;423858;423859;423860;423861;423862	423853			10	
TTHFVEGGDAGNR	0	Unmodified	1359.6167	0.61674089	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.767	11.767	2	0.0047318	9320	160511_QHF_FH_JSI11i_3	62.466	56.984			0.90982	0.8428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90982	0.8428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14883000	8773300	6109500	0	0	0	0	0	0	14883000	8773300	6109500	0	0	0	52185	1138	49145	314974;314975	423863;423864	423863			2	
TTHFVEGGDAGNREDQINR	0	Unmodified	2114.973	0.97295699	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.96		10	11						4	9	8	5	3	24.216	21.965	2;3;4	6.6453E-33	18954	160511_QHF_FH_JSI10i_2	191.51	186.3			1.0129	1.0268	23.488	21	4	Median	1.324	1.0946	16.501	7	3	Median	0.92147	1.1155	13.497	6	1	Median	0.71633	0.70654	7.4053	5	0	Median	1.0129	1.0268	13.432	3	0	Median	4040600000	1994500000	2046100000	1242400000	529780000	712620000	1501700000	719730000	781970000	1028900000	599360000	429560000	267610000	145680000	121930000	52186	1138	49146	314976;314977;314978;314979;314980;314981;314982;314983;314984;314985;314986;314987;314988;314989;314990;314991;314992;314993;314994;314995;314996;314997;314998;314999;315000	423865;423866;423867;423868;423869;423870;423871;423872;423873;423874;423875;423876;423877;423878;423879;423880;423881;423882;423883;423884;423885;423886;423887;423888;423889;423890;423891;423892;423893;423894;423895;423896;423897;423898;423899;423900;423901;423902;423903	423891			39	
TTHLIAK	1	Unmodified	782.46504	0.46503826	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	9.4341	9.1041	2	0.0084038	6700	160511_QHF_FH_JSI11i_3	83.614	66.687			1.064	1.1041	19.273	5	0	Median	1.6083	1.3706	1.9713	2	0	Median	0.77037	0.87942	NaN	1	0	Median	1.064	1.0209	NaN	1	0	Median	1.0571	1.1041	NaN	1	0	Median	1297300000	753620000	543640000	178960000	72722000	106240000	150620000	83037000	67582000	440410000	275050000	165360000	527270000	322810000	204460000	52187	110	49147	315001;315002;315003;315004;315005	423904;423905;423906;423907;423908;423909;423910	423904			7	
TTHLLPIQSTYSLANIK	1	Unmodified	1899.0466	0.046562847	1350	P30414	NKTR	NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	76.357	76.08	3	3.7014E-05	66016	160511_QHF_FH_JSI12i_3	75.018	63.497			0.93369	0.87428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93369	0.87428	NaN	1	0	Median	32051000	18184000	13867000	0	0	0	0	0	0	0	0	0	32051000	18184000	13867000	52188	1350	49148	315006	423911	423911			1	
TTHMVLLEIIK	1	Unmodified	1296.7475	0.74754405	378	O43808	SLC25A17	Peroxisomal membrane protein PMP34	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.518	75.234	3	0.00043541	65267	160511_QHF_FH_JSI12i_3	60.598	46.363			0.55718	0.52871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55718	0.52871	NaN	1	0	Median	32366000	17211000	15155000	0	0	0	0	0	0	0	0	0	32366000	17211000	15155000	52189	378	49149	315007	423912	423912			1	
TTHVVNLGSNQYLFSVIVDPK	1	Unmodified	2330.227	0.22704641	4225	Q96RS6	NUDCD1	NudC domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.381	78.756	3	2.8564E-05	43968	160513_QHF_FH_JSI10Kac_6	114.63	102.78			0.60611	0.71621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60611	0.71621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135130000	93542000	41589000	0	0	0	135130000	93542000	41589000	0	0	0	0	0	0	52190	4225	49150	315008	423913	423913			1	
TTHYTPLACGSNPLK	1	Unmodified	1658.8086	0.80864076	453	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.372	39.176	3	4.4317E-05	33353	160511_QHF_FH_JSI12i_3	79.885	70.835			0.76939	0.80016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76939	0.80016	NaN	1	0	Median	59390000	34840000	24550000	0	0	0	0	0	0	0	0	0	59390000	34840000	24550000	52191	453	49151	315009	423914;423915	423914			2	
TTIEAIHGLMSQVIK	1	Unmodified	1639.8967	0.89672749	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.72		5	7						2	2	4	4	4	83.346	82.308	2;3	3.2584E-21	71589	160511_QHF_FH_JSI12i_3	192.15	165.47			1.1592	1.037	15.394	11	0	Median	1.2583	1.0657	3.8645	2	0	Median	0.83783	0.98448	17.001	3	0	Plateau	1.0794	1.0012	15.179	3	0	Median	1.1592	1.1949	22.741	3	0	Median	1945900000	897770000	1048100000	161710000	63764000	97942000	509420000	278990000	230430000	530040000	205520000	324520000	744700000	349500000	395190000	52192	3905	49152	315010;315011;315012;315013;315014;315015;315016;315017;315018;315019;315020;315021;315022;315023	423916;423917;423918;423919;423920;423921;423922;423923;423924;423925;423926;423927;423928;423929;423930;423931;423932;423933;423934;423935;423936;423937;423938;423939;423940;423941;423942;423943	423939			28	
TTIENIQLPHTLLSR	0	Unmodified	1734.9628	0.96283322	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.634	1	5	7							2	4	4	3	77.245	76.54	2;3	2.1754E-22	66371	160511_QHF_FH_JSI12i_3	180.06	162.86			0.897	0.94981	12.159	13	1	Median	1.3248	1.1002	5.7238	2	0	Median	0.84503	0.99365	8.9261	4	0	Median	0.97667	0.96252	9.3192	4	1	Linear	0.85696	0.8784	7.4706	3	0	Median	2752900000	1367400000	1385500000	355710000	162920000	192790000	773150000	412160000	361000000	895110000	433900000	461200000	728980000	358430000	370540000	52193	1409	49153	315024;315025;315026;315027;315028;315029;315030;315031;315032;315033;315034;315035;315036	423944;423945;423946;423947;423948;423949;423950;423951;423952;423953;423954;423955;423956;423957;423958;423959;423960;423961;423962;423963	423962			19	
TTIESHTK	1	Unmodified	915.46616	0.46616048	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	5.6808	5.2779	2	0.00096726	3150	160511_QHF_FH_JSI11i_2	95.815	58.794			1.0735	0.97148	8.682	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81415	0.97148	NaN	1	0	Median	1.1214	1.1106	NaN	1	0	Median	0.87003	0.94376	NaN	1	0	Median	248700000	139980000	108720000	0	0	0	64330000	36843000	27487000	101190000	53911000	47279000	83178000	49228000	33951000	52194	1443	49154	315037;315038;315039	423964;423965;423966;423967	423966			4	
TTIFSPEGR	0	Unmodified	1006.5084	0.50835964	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.745	2	4	6							2	3	4	3	37.275	36.511	2	3.7298E-22	31158	160511_QHF_FH_JSI12i_3	164.53	122.88			1.1595	1.1714	12.299	8	2	Median	1.3546	1.1063	NaN	1	0	Median	0.90144	1.0603	11.014	2	0	Median	1.1848	1.1814	11.022	3	1	Median	1.2193	1.2977	12.525	2	1	Median	3469400000	1590800000	1878700000	76444000	34279000	42165000	704420000	351720000	352690000	1528500000	678140000	850380000	1160100000	526630000	633430000	52195	1267	49155	315040;315041;315042;315043;315044;315045;315046;315047;315048;315049;315050;315051	423968;423969;423970;423971;423972;423973;423974;423975;423976;423977;423978;423979;423980;423981;423982	423982			14	
TTIFTDAK	1	Unmodified	895.4651	0.46509784	2659	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	6.02	5	5	1			1	3	2		4	4	4	5	34.869	30.897	2	3.3349E-07	26942	160511_QHF_FH_JSI9i_1	153.78	113.68			0.99863	1.0609	24.823	17	6	Median	1.0155	0.85432	32.652	4	2	Median	0.88378	1.0624	27.957	4	2	Median	1.1127	1.1037	3.8444	4	0	Linear	0.99863	1.071	30.154	5	2	Median	4119900000	2051200000	2068700000	720280000	320130000	400150000	1396800000	698330000	698510000	941070000	489090000	451990000	1061700000	543620000	518090000	52196	2659	49156	315052;315053;315054;315055;315056;315057;315058;315059;315060;315061;315062;315063;315064;315065;315066;315067;315068	423983;423984;423985;423986;423987;423988;423989;423990;423991;423992;423993;423994;423995;423996;423997;423998;423999;424000;424001;424002;424003;424004	423993			21	
TTIHEMFLSTLDPK	1	Unmodified	1631.8229	0.82289384	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								1	2	4	77.108	76.485	2;3	0.00022999	66270	160511_QHF_FH_JSI12i_3	105.86	80.204			0.80875	0.93552	64.449	7	6	Median	NaN	NaN	NaN	0	0	Median	0.80875	0.9975	NaN	1	1	Median	0.44632	0.44157	106.18	2	1	Median	0.79139	0.83035	53.177	4	4	Median	1278200000	1001300000	276920000	0	0	0	77591000	50083000	27507000	515260000	411240000	104020000	685390000	540010000	145390000	52197	5552	49157	315069;315070;315071;315072;315073;315074;315075	424005;424006;424007;424008;424009;424010;424011	424011			7	
TTIHQLTMQK	1	Unmodified	1199.6332	0.63324258	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.57		1	3						3	2	2	2	1	32.165	28.512	2;3	3.9648E-06	23469	160511_QHF_FH_JSI12i_3	110.53	92.714			0.90775	0.92975	41.098	6	2	Median	0.93421	0.79482	41.679	2	0	Median	0.90775	1.0674	39.03	2	0	Median	1.7011	1.6645	NaN	1	1	Median	0.67281	0.67699	NaN	1	1	Median	977380000	563060000	414310000	94712000	43949000	50762000	77815000	43991000	33824000	8148200	2822000	5326200	796700000	472300000	324400000	52198	1085	49158	315076;315077;315078;315079;315080;315081;315082	424012;424013;424014;424015;424016;424017	424016			4	
TTIHQLTMQK	1	Oxidation (M)	1215.6282	0.6281572	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	20.319	20.332	3	0.001675	16620	160511_QHF_FH_JSI12i_3	63.212	54.482			1.1803	1.1854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1803	1.1854	NaN	1	1	Median	106390000	43900000	62486000	0	0	0	0	0	0	0	0	0	106390000	43900000	62486000	52199	1085	49158	315083	424018	424018		734	1	
TTIIWDAHTGEAK	1	Unmodified	1441.7201	0.72014333	4568;459	Q9BZK7;O60907	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	42.65	41.682	2;3	1.7879E-09	36693	160511_QHF_FH_JSI10i_2	108.9	98.201			1.4303	1.367	41.663	8	1	Median	2.1716	1.8544	72.931	2	0	Median	1.2585	1.541	59.096	2	1	Median	1.3704	1.367	25.464	2	0	Median	1.3224	1.4607	40.761	2	0	Median	733980000	325840000	408140000	98915000	32682000	66233000	170500000	95797000	74701000	279110000	124060000	155050000	185460000	73297000	112160000	52200	4568;459	49159	315084;315085;315086;315087;315088;315089;315090;315091;315092	424019;424020;424021;424022;424023;424024;424025;424026;424027;424028;424029	424029			11	
TTINKNAR	1	Acetyl (K)	958.51959	0.51959303	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13.7	0.471						1	2					2	1	20.376	12.825	2	0.00041556	9003	160513_QHF_FH_JSI11Kac_4	116.9	70.952			0.25751	0.25299	17.797	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30674	0.30117	24.653	2	1	Median	0.28843	0.32046	NaN	1	0	Median	77857000	58125000	19732000	0	0	0	0	0	0	66167000	49764000	16403000	11691000	8360700	3329900	52201	1592	49160	315093;315094;315095	424030;424031;424032	424031	1616		3	
TTINNEYNYR	0	Unmodified	1286.5891	0.58912916	890	P08069	IGF1R	Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.391	26.032	2	0.0084455	21805	160511_QHF_FH_JSI11i_2	51.346	41.359			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52202	890	49161	315096	424033	424033			1	
TTIPEEEEEEEEAAGVVVEEELFHQQGTPR	0	Unmodified	3410.5638	0.56376843	1180	P20700	LMNB1	Lamin-B1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	3	3	1	100.83	100.75	3;4	1.5598E-254	91432	160511_QHF_FH_JSI10i_1	343.68	337.19			1.1977	1.2042	13.473	7	0	Median	1.5468	1.3165	NaN	1	0	Median	0.83847	1.0187	11.211	2	0	Median	1.2553	1.2042	11.953	3	0	Median	1.1977	1.2607	NaN	1	0	Median	1154800000	504620000	650200000	83275000	30417000	52858000	358470000	174970000	183500000	414620000	162750000	251870000	298450000	136480000	161970000	52203	1180	49162	315097;315098;315099;315100;315101;315102;315103;315104	424034;424035;424036;424037;424038;424039;424040;424041;424042;424043	424038			10	
TTISVAHLLAAR	0	Unmodified	1251.7299	0.72992016	3614	Q8NCA5	FAM98A	Protein FAM98A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.4	5.31		1	3						1	1	3	1		62.602	61.596	3	0.00012628	33862	160513_QHF_FH_JSI10Kac_6	75.088	61.906			1.081	0.88787	12.807	3	1	Median	1.081	0.88787	NaN	1	0	Median	0.70296	0.79849	NaN	1	0	Median	1.0877	1.0304	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85666000	41812000	43854000	31467000	15286000	16181000	28750000	16877000	11873000	25449000	9649700	15800000	0	0	0	52204	3614	49163	315105;315106;315107;315108;315109	424044;424045;424046;424047;424048	424048			3	
TTITEPHHIWPTLTDEEWIK	1	Unmodified	2446.2169	0.21687565	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			8									3	5	83.475	83.351	3;4	5.1382E-07	71844	160511_QHF_FH_JSI12i_3	94.384	79.924			0.94773	0.94011	38.749	8	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0635	0.99772	12.416	3	1	Median	0.90888	0.91338	47.238	5	2	Median	485520000	263760000	221770000	0	0	0	0	0	0	174810000	94976000	79837000	310710000	168780000	141930000	52205	3101	49164	315110;315111;315112;315113;315114;315115;315116;315117	424049;424050;424051;424052;424053;424054;424055;424056;424057;424058;424059;424060	424054			12	
TTITMAHLLAAR	0	Unmodified	1297.7176	0.71764091	2844	Q52LJ0	FAM98B	Protein FAM98B	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									3	1	2			66.933	58.761	2;3	4.453E-33	32271	160513_QHF_FH_JSI10Kac_6	188.96	172.58			0.81796	0.94262	6.5022	3	0	Median	1.1334	0.94262	NaN	1	0	Median	0.7651	0.89758	8.2811	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	230390000	137740000	92654000	16603000	7760100	8842800	213790000	129980000	83811000	0	0	0	0	0	0	52206	2844	49165	315118;315119;315120	424061;424062;424063	424062			3	
TTITTTTTSSSGLGSPMIVGSPR	0	Unmodified	2251.1366	0.13657642	4239	Q96S97	MYADM	Myeloid-associated differentiation marker	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	66.074	65.432	2;3	9.0902E-104	59240	160511_QHF_FH_JSI10i_1	326.31	313.43			1.1776	1.0363	12.718	6	0	Median	1.2267	1.0363	10.127	2	0	Median	0.81708	0.94852	NaN	1	0	Median	1.2646	1.2217	7.9584	2	0	Median	0.93867	0.95574	NaN	1	0	Median	318890000	151170000	167730000	81232000	40190000	41042000	70847000	34721000	36126000	111110000	48327000	62780000	55708000	27928000	27780000	52207	4239	49166	315121;315122;315123;315124;315125;315126	424064;424065;424066;424067;424068;424069;424070;424071;424072;424073;424074	424069			10	
TTIVIAHR	0	Unmodified	909.5396	0.53960019	894	P08183	ABCB1	Multidrug resistance protein 1	no	no	0	0	0	0	By MS/MS		By matching		16	0									2	1		1		28.485	19.656	2	0.05434	11223	160513_QHF_FH_JSI9Kac_6	43.124	30.135			0.98687	0.88872	1.1338	2	0	Median	1.0661	0.89588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9135	0.88163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10466000	5336100	5129900	5073200	2774600	2298500	0	0	0	5392900	2561400	2831400	0	0	0	52208	894	49167	315127;315128	424075	424075			1	
TTIVVAHR	0	Unmodified	895.52395	0.52395013	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	21.449	13.805	3	0.0028791	8526	160513_QHF_FH_JSI10Kac_6	60.895	36.94			1.0893	0.85695	25.474	4	3	Linear	1.1885	0.97319	NaN	1	0	Median	0.88589	1.0415	NaN	1	1	Median	0.793	0.75459	NaN	1	1	Median	0.54817	0.5965	NaN	1	1	Median	71546000	38578000	32967000	16135000	7254000	8880700	29035000	16438000	12598000	17325000	8933900	8391100	9050700	5952800	3097900	52209	4880	49168	315129;315130;315131;315132;315133;315134	424076;424077;424078;424079;424080;424081;424082	424082			7	
TTIYEIQDDRGK	1	Unmodified	1437.71	0.70997257	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	33.851	32.521	2	0.02651	27563	160511_QHF_FH_JSI12i_2	58.37	37.67			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52210	2752	49169	315135	424083	424083			1	
TTLAHIIASNSK	1	Unmodified	1254.6932	0.6932003	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	37.184	36.411	2	2.1605E-05	31661	160511_QHF_FH_JSI11i_3	110.86	92.993			0.82146	0.77671	20.746	4	1	Median	0.94544	0.7643	NaN	1	1	Median	0.87997	1.0107	NaN	1	0	Median	0.64838	0.60878	NaN	1	0	Median	0.76683	0.78933	NaN	1	0	Median	267480000	155620000	111860000	83014000	46280000	36734000	60921000	37311000	23609000	58708000	33762000	24945000	64840000	38270000	26571000	52211	4235	49170	315136;315137;315138;315139	424084;424085;424086;424087;424088;424089;424090;424091	424085			8	
TTLEVLQLFPINIK	1	Unmodified	1627.9549	0.95489429	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.22	102.04	3	7.7656E-07	88009	160511_QHF_FH_JSI12i_2	122.39	110.7			0.71538	0.7659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71538	0.7659	NaN	1	1	Median	41796000	25008000	16788000	0	0	0	0	0	0	0	0	0	41796000	25008000	16788000	52212	2947	49171	315140	424092	424092			1	
TTLIICPLSVLSNWIDQFGQHIK	1	Unmodified	2682.4203	0.42034326	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.24	95.516	3	4.854E-236	56352	160513_QHF_FH_JSI10Kac_6	328.96	301.44			0.91312	1.0499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91312	1.0499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186240000	95957000	90279000	0	0	0	186240000	95957000	90279000	0	0	0	0	0	0	52213	2540	49172	315141	424093;424094	424093			2	
TTLIIMR	0	Unmodified	846.49971	0.49970921	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	59.758	50.19	2	1.6883E-06	27601	160513_QHF_FH_JSI10Kac_6	132.96	115.19			0.93689	1.0107	7.3748	5	0	Median	1.3077	1.1403	NaN	1	0	Median	0.82035	0.96212	2.8711	2	0	Median	1.0852	1.0636	NaN	1	0	Median	0.93689	1.0107	NaN	1	0	Median	161500000	72005000	89498000	37238000	13461000	23778000	66473000	32505000	33968000	41996000	18659000	23337000	15795000	7381000	8414200	52214	467	49173	315142;315143;315144;315145;315146	424095;424096;424097;424098;424099	424099			5	
TTLILPTQQVR	0	Unmodified	1268.7452	0.74523587	5481	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									1	2	1	57.79	57.125	2	9.9075E-05	51490	160511_QHF_FH_JSI10i_1	99.653	87.427			0.89114	1.01	20.128	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81223	0.92267	NaN	1	0	Median	0.90767	0.91251	30.799	2	0	Median	0.97772	1.1057	NaN	1	0	Median	122230000	61619000	60613000	0	0	0	24751000	12976000	11775000	61293000	28851000	32442000	36187000	19792000	16395000	52215	5481	49174	315147;315148;315149;315150	424100;424101;424102;424103	424102			4	
TTLLGTIFSPVFNFFSPANK	1	Unmodified	2200.1568	0.15684158	2237	Q05D32	CTDSPL2	CTD small phosphatase-like protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.64	94.92	3	2.2979E-19	55930	160513_QHF_FH_JSI10Kac_6	144.68	128.95			0.79311	0.93659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79311	0.93659	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201860000	122870000	78994000	0	0	0	201860000	122870000	78994000	0	0	0	0	0	0	52216	2237	49175	315151	424104	424104			1	
TTLLHMLK	1	Unmodified	955.55247	0.55247306	4941;5716	Q9NR31;Q9Y6B6	SAR1A;SAR1B	GTP-binding protein SAR1a;GTP-binding protein SAR1b	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.36		5	10						8	7	5	5	6	51.646	47.628	2;3	2.8754E-06	40141	160511_QHF_FH_JSI12i_3	154.35	135.62			1.0682	1.0533	16.752	22	2	Median	1.3558	1.0844	18.434	6	1	Median	0.82028	0.97813	6.3164	5	0	Median	1.0839	1.0219	12.444	5	0	Median	1.0382	1.0927	19.427	6	1	Median	8696000000	3792900000	4903100000	2360400000	920950000	1439500000	1994100000	875460000	1118600000	1635000000	700600000	934390000	2706500000	1295900000	1410600000	52217	4941;5716	49176	315152;315153;315154;315155;315156;315157;315158;315159;315160;315161;315162;315163;315164;315165;315166;315167;315168;315169;315170;315171;315172;315173;315174	424105;424106;424107;424108;424109;424110;424111;424112;424113;424114;424115;424116;424117;424118;424119;424120;424121;424122;424123;424124;424125;424126;424127;424128;424129;424130;424131;424132;424133;424134;424135;424136;424137;424138;424139;424140;424141;424142;424143;424144;424145;424146;424147;424148;424149;424150;424151;424152;424153;424154;424155;424156;424157;424158;424159;424160;424161;424162	424156			58	
TTLLHMLK	1	Oxidation (M)	971.54739	0.54738768	4941;5716	Q9NR31;Q9Y6B6	SAR1A;SAR1B	GTP-binding protein SAR1a;GTP-binding protein SAR1b	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	29.437	28.518	2;3	0.0061088	23425	160511_QHF_FH_JSI9i_3	44.349	26.53			1.166	1.2159	30.394	6	1	Median	1.1462	0.92965	2.2705	2	0	Median	1.1334	1.3209	9.4902	2	0	Median	2.2284	2.0998	NaN	1	1	Median	1.1893	1.1968	NaN	1	0	Median	607270000	276010000	331260000	188120000	89695000	98428000	122300000	62366000	59933000	123190000	45179000	78011000	173660000	78771000	94887000	52218	4941;5716	49176	315175;315176;315177;315178;315179;315180	424163;424164;424165;424166;424167;424168;424169	424167		2560	7	
TTLLHMLKDDR	1	Acetyl (K)	1383.718	0.71803484	4941;5716	Q9NR31;Q9Y6B6	SAR1A;SAR1B	GTP-binding protein SAR1a;GTP-binding protein SAR1b	no	no	1	0	0	1			By MS/MS		16	0									1			1		73.502	64.12	3	0.0012504	34783	160513_QHF_FH_JSI11Kac_6	70.412	51.835			0.088402	0.086719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.088402	0.086719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26209000	24741000	1467600	0	0	0	0	0	0	26209000	24741000	1467600	0	0	0	52219	4941;5716	49177	315181	424170	424170	3274		1	
TTLLKHIANR	1	Acetyl (K)	1207.7037	0.70370541	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			44.761	36.149	3	0.0069739	20004	160513_QHF_FH_JSI10Kac_6	45.257	40.948			0.9798	1.1618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9798	1.1618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11191000	5070700	6119900	0	0	0	11191000	5070700	6119900	0	0	0	0	0	0	52220	3634	49178	315182	424171;424172	424171	2897		2	
TTLLNYILTEQHSK	1	Unmodified	1659.8832	0.88318591	3396	Q9BRT8;Q8IUF1;Q5RIA9;Q5JTY5;Q4V339	CBWD1;CBWD2;CBWD5;CBWD3;CBWD6	COBW domain-containing protein 1;COBW domain-containing protein 2;COBW domain-containing protein 5;COBW domain-containing protein 3;COBW domain-containing protein 6	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			81.429	80.099	3	1.803E-10	67123	160511_QHF_FH_JSI10i_3	139.86	132.08			0.81947	0.78565	4.9225	2	0	Median	0.95428	0.75877	NaN	1	0	Median	0.70371	0.81347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93566000	50111000	43455000	51678000	24404000	27275000	41888000	25707000	16180000	0	0	0	0	0	0	52221	3396	49179	315183;315184	424173;424174	424173			2	
TTLLPGLLK	1	Unmodified	954.61137	0.61136815	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	75.311	74.604	2	1.3681E-05	66302	160511_QHF_FH_JSI11i_3	109.86	83.26			0.98859	1.0294	16.571	10	0	Median	1.2953	1.0777	22.521	2	0	Median	0.91747	1.0864	12.293	3	0	Median	0.92651	0.96557	6.0714	3	0	Plateau	0.93424	1.0123	31.38	2	0	Median	1468600000	755420000	713150000	225640000	100630000	125000000	321560000	181350000	140210000	469540000	251000000	218540000	451840000	222440000	229400000	52222	4982	49180	315185;315186;315187;315188;315189;315190;315191;315192;315193;315194	424175;424176;424177;424178;424179;424180;424181;424182;424183;424184;424185;424186;424187;424188;424189;424190;424191;424192;424193;424194;424195;424196;424197	424176			23	
TTLLPSGAEVLSYSEAAK	1	Unmodified	1835.9517	0.95165941	3020	Q687X5	STEAP4	Metalloreductase STEAP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	82.229	81.761	2	3.5573E-07	74116	160511_QHF_FH_JSI10i_1	118.13	109.12			0.058732	0.062478	150.77	4	4	Median	0.022184	0.017981	NaN	1	1	Median	0.033961	0.039656	NaN	1	1	Median	0.10157	0.098434	NaN	1	1	Median	0.56607	0.59945	NaN	1	1	Median	1126500000	1059800000	66725000	416670000	405490000	11177000	384330000	364080000	20252000	275430000	256140000	19286000	50096000	34087000	16009000	52223	3020	49181	315195;315196;315197;315198	424198;424199;424200;424201	424200			4	
TTLPERPLTEVK	1	Unmodified	1382.7769	0.77692993	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	40.235	39.81	3	0.00010684	34830	160511_QHF_FH_JSI11i_3	77.185	63.784			1.1282	0.81692	25.708	4	0	Linear	0.73417	0.62211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92597	0.91651	29.847	2	0	Median	0.89654	0.89925	NaN	1	0	Median	366480000	199130000	167350000	52371000	31389000	20982000	0	0	0	192490000	102850000	89640000	121620000	64891000	56729000	52224	4206	49182	315199;315200;315201;315202	424202;424203;424204;424205	424202			4	
TTLPTFQSPEFSVTR	0	Unmodified	1709.8625	0.86245047	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	78.316	77.494	2	7.3641E-05	66795	160511_QHF_FH_JSI12i_2	115.14	100.88			0.93844	1.027	6.6802	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98088	0.99105	8.9877	2	2	Median	0.93844	1.027	NaN	1	1	Median	235170000	128740000	106430000	0	0	0	0	0	0	173050000	93485000	79570000	62117000	35253000	26864000	52225	5687	49183	315203;315204;315205	424206;424207;424208	424206			3	
TTLSASGTGFGDK	1	Unmodified	1240.5935	0.59354583	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	3	1	1	35.879	35.109	2	1.381E-16	30822	160511_QHF_FH_JSI9i_1	206.97	163.72			1.0021	1.1681	23.514	7	7	Median	1.2352	1.0346	39.407	2	2	Median	0.82757	1.0109	24.192	3	3	Median	1.1915	1.1681	NaN	1	1	Median	1.1654	1.2089	NaN	1	1	Median	735880000	408360000	327520000	197550000	109870000	87679000	213380000	127780000	85593000	189330000	102720000	86604000	135630000	67988000	67641000	52226	1684	49184	315206;315207;315208;315209;315210;315211;315212	424209;424210;424211;424212;424213;424214;424215;424216	424212			8	
TTLSRFVAWMNGLSVYQIK	1	Unmodified	2213.1667	0.16669476	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.024	63.738	4	0.038788	54960	160511_QHF_FH_JSI12i_3	23.1	13.936			1.1486	1.1517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1486	1.1517	NaN	1	0	Median	91162000	43962000	47201000	0	0	0	0	0	0	0	0	0	91162000	43962000	47201000	52227	2517	49185	315213	424217	424217			1	
TTLTAAITK	1	Unmodified	918.5386	0.53859714	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	5.99	4	4	4			2	3	3		3	6	6	5	40.121	35.977	2	5.347E-06	30546	160511_QHF_FH_JSI12i_2	116.05	94.75			1.0383	1.0879	18.487	19	1	Median	1.3245	1.0951	8.7462	3	0	Plateau	0.89623	1.0578	6.9421	6	0	Median	1.126	1.0918	26.458	5	0	Median	1.0383	1.1761	19.663	5	1	Median	5762600000	2680300000	3082400000	1064200000	462200000	602030000	1490600000	780330000	710270000	1799800000	815390000	984450000	1407900000	622320000	785620000	52228	1658	49186	315214;315215;315216;315217;315218;315219;315220;315221;315222;315223;315224;315225;315226;315227;315228;315229;315230;315231;315232;315233	424218;424219;424220;424221;424222;424223;424224;424225;424226;424227;424228;424229;424230;424231;424232;424233;424234;424235;424236;424237;424238;424239;424240;424241;424242;424243;424244;424245;424246;424247	424221			29	
TTLTAAITKILAEGGGAK	2	Acetyl (K)	1756.9935	0.99346464	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	96.077	86.656	3	0.00020908	49149	160513_QHF_FH_JSI11Kac_6	70.944	52.841			0.7072	0.71923	33.662	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58917	0.56689	NaN	1	0	Median	0.84887	0.91252	NaN	1	0	Median	123390000	79230000	44159000	0	0	0	0	0	0	66557000	39268000	27289000	56832000	39962000	16870000	52229	1658	49187	315234;315235	424248;424249;424250	424248	1681		3	
TTLTSDESVK	1	Unmodified	1079.5346	0.53463397	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		19.832	19.318	2	0.0047585	16602	160511_QHF_FH_JSI10i_1	64.654	40.022			0.95194	1.1077	30.883	3	2	Median	0.94519	0.77944	NaN	1	1	Median	0.95194	1.1077	NaN	1	1	Median	1.5121	1.4426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125450000	53479000	71972000	38364000	20591000	17773000	39949000	17299000	22650000	47138000	15589000	31549000	0	0	0	52230	5258	49188	315236;315237;315238	424251;424252;424253	424252			2	
TTLVCPYLVDTGMFR	0	Unmodified	1771.8637	0.8637128	3489	Q8IZV5	RDH10	Retinol dehydrogenase 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		94.953	94.639	2	0.00029361	83182	160511_QHF_FH_JSI11i_2	71.555	57.397			0.65183	0.76573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65183	0.76573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6250000	4033300	2216700	0	0	0	6250000	4033300	2216700	0	0	0	0	0	0	52231	3489	49189	315239;315240	424254;424255	424254			2	
TTLVGIIK	1	Unmodified	843.54295	0.54295423	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	56.488	55.544	2	0.0040128	48003	160511_QHF_FH_JSI11i_2	69.998	55.586			0.90659	0.90756	8.3669	4	0	Median	1.0055	0.88486	NaN	1	0	Median	0.68155	0.81957	NaN	1	0	Median	0.98067	0.99957	NaN	1	0	Median	0.8381	0.93085	NaN	1	0	Median	86877000	48140000	38737000	13185000	7521700	5662900	25429000	14339000	11090000	27785000	13943000	13841000	20479000	12336000	8142500	52232	2302	49190	315241;315242;315243;315244	424256;424257	424257			2	
TTLVIMER	0	Unmodified	961.52665	0.52665224	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.12		6					4	4	5	3	6	5	5	57.073	47.496	2	1.856E-32	25301	160513_QHF_FH_JSI9Kac_5	194.44	145.09			1.0334	1.1005	7.8959	13	6	Median	1.2696	1.093	5.5753	2	0	Median	0.98309	1.1571	10.002	4	3	Median	1.0613	1.0435	9.0335	3	0	Median	0.97013	1.0781	3.7842	4	3	Median	1374500000	681860000	692650000	171560000	74821000	96740000	343610000	184770000	158840000	258110000	120320000	137790000	601230000	301940000	299290000	52233	2585	49191	315245;315246;315247;315248;315249;315250;315251;315252;315253;315254;315255;315256;315257;315258;315259;315260;315261;315262;315263	424258;424259;424260;424261;424262;424263;424264;424265;424266;424267;424268;424269;424270;424271;424272;424273;424274;424275;424276;424277;424278;424279;424280	424261			23	
TTLVIMER	0	Oxidation (M)	977.52157	0.52156686	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.416							2	7		2	4	1	2	42.816	32.807	2	0.0008634	18758	160513_QHF_FH_JSI11Kac_5	102.51	102.51			0.98122	1.087	8.579	8	1	Median	1.2107	1.0249	NaN	1	1	Median	0.96395	1.1544	10.107	4	0	Median	1.0513	1.0377	NaN	1	0	Median	0.992	1.0771	11.885	2	0	Median	242100000	124050000	118050000	28325000	12516000	15810000	118360000	63189000	55175000	52924000	26229000	26696000	42489000	22117000	20372000	52234	2585	49191	315264;315265;315266;315267;315268;315269;315270;315271;315272	424281;424282;424283;424284;424285;424286;424287;424288;424289;424290	424286		2032	10	
TTLVYGIFTTSSSVFK	1	Unmodified	1749.9189	0.91890272	4333	Q99985	SEMA3C	Semaphorin-3C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	90.601	81.433	2;3	1.0779E-52	43823	160513_QHF_FH_JSI12Kac_6	192.15	169.61			0.67787	0.65309	48.752	6	0	Median	0.51593	0.44508	39.49	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89449	0.87722	39.246	2	0	Median	0.83652	0.90453	48.541	2	0	Median	232820000	126160000	106660000	99490000	61067000	38423000	0	0	0	79794000	41443000	38351000	53532000	23648000	29883000	52235	4333	49192	315273;315274;315275;315276;315277;315278;315279	424291;424292;424293;424294;424295;424296;424297;424298;424299	424297			9	
TTMVTSFTNEDLLR	0	Unmodified	1626.7923	0.792322	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	75.405	74.85	2	0.00051286	68182	160511_QHF_FH_JSI12i_1	93.258	81.725			1.2664	1.3225	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2664	1.3225	NaN	1	1	Median	20155000	9903400	10251000	0	0	0	0	0	0	0	0	0	20155000	9903400	10251000	52236	3146	49193	315280	424300	424300			1	
TTNAGPLHPYWPQHLR	0	Acetyl (Protein N-term)	1928.9646	0.96456455	2634	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.77		8	8						5	5	6	5	5	66.065	63.305	2;3	8.8097E-27	56208	160511_QHF_FH_JSI9i_2	225.13	194.69			2.1724	2.297	412.83	2	0	Median	NaN	NaN	NaN	0	0	Median	0.10334	0.12399	NaN	1	0	Median	45.669	42.554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	936240000	124300000	811950000	0	0	0	119030000	106980000	12050000	817210000	17316000	799900000	0	0	0	52237	2634	49194	315281;315282;315283;315284;315285;315286;315287;315288;315289;315290;315291;315292;315293;315294;315295;315296;315297;315298;315299;315300;315301	424301;424302;424303;424304;424305;424306;424307;424308;424309;424310;424311;424312;424313;424314;424315;424316;424317;424318;424319;424320;424321;424322;424323;424324;424325;424326;424327;424328;424329;424330;424331;424332;424333;424334;424335	424318			35	
TTNFAGILSQGLR	0	Unmodified	1376.7412	0.74121312	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	3	2	1	79.516	78.55	2;3	2.1482E-10	64505	160511_QHF_FH_JSI9i_3	168.94	153.79			0.9196	0.97738	7.5683	9	1	Median	1.3124	1.0676	5.7192	3	0	Median	0.88088	1.0021	4.3601	3	0	Median	0.9152	0.88942	5.1195	2	0	Median	0.82087	0.93984	NaN	1	1	Median	1775800000	873930000	901880000	725060000	311040000	414020000	667820000	366860000	300960000	335770000	170150000	165620000	47164000	25883000	21281000	52238	939	49195	315302;315303;315304;315305;315306;315307;315308;315309;315310	424336;424337;424338;424339;424340;424341;424342;424343;424344;424345;424346;424347;424348;424349;424350	424341			13	
TTNIELQGVPNDEVHPLLGVK	1	Unmodified	2272.2063	0.20631097	2651	Q15291	RBBP5	Retinoblastoma-binding protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	75.488	74.585	3	4.4196E-10	65480	160511_QHF_FH_JSI11i_2	109.62	100.34			1.0606	1.1481	10.193	6	5	Median	1.4309	1.276	NaN	1	1	Median	0.85696	1.0607	14.88	2	2	Median	1.112	1.1186	NaN	1	0	Median	1.074	1.1663	7.2795	2	2	Median	331450000	163830000	167610000	48274000	18774000	29500000	94771000	55668000	39104000	69018000	29910000	39108000	119380000	59482000	59901000	52239	2651	49196	315311;315312;315313;315314;315315;315316	424351;424352;424353;424354;424355;424356;424357	424354			7	
TTNLPTSVTATK	1	Unmodified	1232.6612	0.66123147	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.807	33.225	2	0.00050571	29944	160511_QHF_FH_JSI12i_1	85.377	74.854			1.6243	1.7083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6243	1.7083	NaN	1	1	Median	37868000	14096000	23772000	0	0	0	0	0	0	0	0	0	37868000	14096000	23772000	52240	2912	49197	315317	424358	424358			1	
TTNNIPLLQQILLTLQHLPLTVDHLK	1	Unmodified	2975.7172	0.71717721	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.54	93.09	4	2.5084E-53	52891	160513_QHF_FH_JSI9Kac_6	182.33	175.69			0.95725	0.95553	1.6461	2	0	Median	1.1554	0.96672	NaN	1	0	Median	0.79311	0.94447	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	607730000	332860000	274870000	196940000	98858000	98086000	410790000	234010000	176780000	0	0	0	0	0	0	52241	4206	49198	315318;315319	424359;424360;424361;424362	424360			4	
TTNPSKYIR	1	Acetyl (K)	1120.5877	0.58767259	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	40.101	30.21	2	4.3368E-05	18446	160513_QHF_FH_JSI11Kac_4	126.41	112.64			0.26259	0.25585	63.527	4	3	Median	NaN	NaN	NaN	0	0	Median	0.14572	0.16802	NaN	1	1	Median	0.26259	0.25585	16.275	2	1	Median	0.69283	0.73274	NaN	1	1	Median	33079000	26449000	6630500	0	0	0	2404000	2238300	165700	27633000	21967000	5666700	3041900	2243800	798120	52242	5708	49199	315320;315321;315322;315323	424363;424364;424365;424366	424364	3535		4	
TTNPTAK	1	Unmodified	731.38137	0.38136821	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	5.0051	4.6195	2	0.04193	2389	160511_QHF_FH_JSI9i_1	46.426	23.934			0.97501	1.0397	12.385	3	0	Plateau	1.5887	1.2916	NaN	1	0	Median	0.93367	1.1034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97501	1.0117	NaN	1	0	Median	1421300000	692070000	729230000	389170000	158730000	230440000	506160000	262740000	243410000	0	0	0	525970000	270600000	255370000	52243	5616	49200	315324;315325;315326	424367;424368	424368			2	
TTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHR	0	Unmodified	3644.8814	0.88135878	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.516	91.795	4	2.6105E-23	53446	160513_QHF_FH_JSI10Kac_6	109.71	99.382			1.1765	1.4171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1765	1.4171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	294170000	120900000	173270000	0	0	0	294170000	120900000	173270000	0	0	0	0	0	0	52244	5239	49201	315327	424369	424369			1	
TTNSSLEEIMDK	1	Unmodified	1366.6286	0.62861071	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		52.372	51.961	2	0.0010148	47084	160511_QHF_FH_JSI11i_1	77.124	50.61			1.3877	1.366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3877	1.366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27533000	8294100	19239000	0	0	0	0	0	0	27533000	8294100	19239000	0	0	0	52245	3196	49202	315328	424370	424370			1	
TTNSSWVVVFK	1	Unmodified	1266.6608	0.66083754	2425	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	6.09		2	1					3	4	2	2	2	4	74.589	67.803	2	4.9586E-58	36487	160513_QHF_FH_JSI11Kac_6	219.03	199.94			0.92101	0.96102	38.455	10	1	Median	0.98116	0.83254	1.8649	2	0	Median	0.82854	0.99485	3.348	2	0	Median	0.9397	0.91491	7.0691	2	0	Median	0.91161	1.0083	57.813	4	1	Median	1223200000	642900000	580310000	242370000	110530000	131850000	354220000	206540000	147680000	304640000	167650000	136980000	321980000	158180000	163800000	52246	2425	49203	315329;315330;315331;315332;315333;315334;315335;315336;315337;315338	424371;424372;424373;424374;424375;424376;424377;424378;424379;424380;424381;424382	424372			11	
TTNTWVLHMDGENFR	0	Unmodified	1819.8312	0.83116712	5044	Q9NVQ4	FAIM	Fas apoptotic inhibitory molecule 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	64.406	64.002	2;3	0.00030704	56646	160511_QHF_FH_JSI11i_3	62.203	57.444			1.0255	0.9653	12.424	3	1	Median	1.3214	1.151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0255	0.9653	NaN	1	0	Median	0.90402	0.90549	NaN	1	0	Median	221210000	107260000	113960000	24008000	10643000	13365000	0	0	0	105740000	51086000	54650000	91468000	45527000	45941000	52247	5044	49204	315339;315340;315341;315342	424383;424384;424385;424386	424383			4	
TTNVLGAVNKPLSSAGK	2	Unmodified	1655.9206	0.92063405	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			3							1		2		47.269	46.464	3	0.00043355	41062	160511_QHF_FH_JSI11i_3	67.644	55.728			1.0769	0.93426	21.979	2	1	Median	1.3689	1.0913	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84709	0.79978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	133250000	67302000	65946000	53290000	24114000	29177000	0	0	0	79958000	43188000	36770000	0	0	0	52248	4988	49205	315343;315344;315345	424387;424388;424389;424390	424387			4	
TTNVLGAVNKPLSSAGK	2	Acetyl (K)	1697.9312	0.93119874	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.1	0.793					3	4	4				3	1	7	72.913	63.436	2;3	2.4965E-10	31578	160513_QHF_FH_JSI10Kac_3	119.32	105.65			0.82208	0.95389	16.722	7	0	Median	NaN	NaN	NaN	0	0	Median	0.70203	0.81014	10.062	3	0	Median	1.0467	1.0343	NaN	1	0	Median	1.0308	1.1074	22.661	3	0	Median	41963000	21193000	20770000	0	0	0	16080000	8967600	7112000	3197600	1696700	1500800	22686000	10529000	12158000	52249	4988	49205	315346;315347;315348;315349;315350;315351;315352;315353;315354;315355;315356	424391;424392;424393;424394;424395;424396;424397;424398;424399;424400;424401;424402;424403;424404;424405;424406	424400	3290		15	
TTNYSTVPQK	1	Unmodified	1137.5666	0.5666028	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	17.182	15.395	2	0.00038059	12811	160511_QHF_FH_JSI11i_1	76.345	42.173			0.83623	0.93538	28.293	5	3	Median	0.83623	0.68546	NaN	1	1	Median	0.78425	0.93538	NaN	1	0	Median	1.0776	1.0497	NaN	1	0	Median	0.82037	0.86726	47.209	2	2	Median	326460000	173190000	153280000	61920000	32572000	29348000	76972000	43965000	33007000	82734000	39368000	43366000	104840000	57281000	47558000	52250	3128	49206	315357;315358;315359;315360;315361	424407;424408;424409;424410;424411;424412	424408			6	
TTPANAQNASK	1	Acetyl (Protein N-term)	1143.552	0.55201537	2246	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	11.53	11.076	2	0.00069053	8991	160511_QHF_FH_JSI12i_1	52.167	34.182			0.69578	0.73165	57.277	3	1	Median	0.62261	0.51472	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6454	1.5775	NaN	1	1	Median	0.69578	0.73165	NaN	1	0	Median	132650000	71828000	60820000	46189000	24355000	21834000	0	0	0	35996000	17070000	18926000	50463000	30403000	20060000	52251	2246	49207	315362;315363;315364	424413;424414;424415;424416	424414			4	
TTPANPVGPSGGMSDDDK	1	Unmodified	1744.7574	0.75739305	2572	Q14746	COG2	Conserved oligomeric Golgi complex subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	33.062	32.486	2	7.0983E-07	28606	160511_QHF_FH_JSI9i_1	89.629	82.97			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5899500	0	5899500	0	0	0	0	0	0	0	0	0	5899500	0	5899500	52252	2572	49208	315365;315366;315367	424417;424418;424419	424418			3	
TTPASGER	0	Unmodified	817.393	0.39299553	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0			By MS/MS	By matching	5.33	6.13	2						1					2	1	5.459	2.7754	2	0.0099826	2877	160511_QHF_FH_JSI11i_1	55.531	17.885			1.2403	1.2252	28.094	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4106	1.3901	17.863	2	0	Median	0.84232	0.90012	NaN	1	0	Median	356910000	154620000	202290000	0	0	0	0	0	0	250510000	90110000	160400000	106400000	64513000	41887000	52253	1016	49209	315368;315369;315370	424420;424421	424420			2	
TTPATELDAWLAK	1	Unmodified	1415.7296	0.72964538	4692	Q9H3H3	C11orf68	UPF0696 protein C11orf68	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		86.326	85.769	2	0.00018151	75381	160511_QHF_FH_JSI11i_2	81.865	47.144			1.6494	1.5303	21.946	2	1	Median	2.1077	1.7872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2907	1.3104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29545000	10669000	18876000	10314000	2299600	8014600	0	0	0	19231000	8369300	10861000	0	0	0	52254	4692	49210	315371;315372	424422;424423	424423			2	
TTPAVLFWQWINQSFNAVVNYTNR	0	Unmodified	2868.4347	0.43474777	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									6	2	3	1		103.77	96.272	2;3;4	1.1931E-149	57963	160513_QHF_FH_JSI10Kac_6	355.06	333.53			0.92317	1.0055	8.3868	6	1	Median	1.3383	1.1362	2.2479	2	1	Median	0.82055	0.97561	1.5917	3	0	Plateau	1.0386	1.0364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2656200000	1390900000	1265400000	244820000	88872000	155950000	2403600000	1298300000	1105300000	7803800	3716600	4087200	0	0	0	52255	4806	49211	315373;315374;315375;315376;315377;315378	424424;424425;424426;424427;424428;424429;424430	424429			7	
TTPDVIFVFGFR	0	Unmodified	1397.7343	0.73433683	2025	P62847	RPS24	40S ribosomal protein S24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	4.59		4	4	3	3	1	1	2	42	8	8	25	19	100.01	93.101	2;3	3.3086E-53	90070	160511_QHF_FH_JSI10i_2	218.04	159.6			1.1051	1.0834	29.389	37	10	Median	1.1891	1.0693	43.641	6	1	Plateau	0.93832	1.0984	22.08	8	1	Median	1.0657	1.0698	35.204	14	7	Median	1.1051	1.2213	14.223	9	1	Median	27614000000	13974000000	13640000000	5921600000	2832400000	3089200000	10138000000	5334800000	4803000000	6688300000	3152200000	3536000000	4866200000	2654400000	2211800000	52256	2025	49212	315379;315380;315381;315382;315383;315384;315385;315386;315387;315388;315389;315390;315391;315392;315393;315394;315395;315396;315397;315398;315399;315400;315401;315402;315403;315404;315405;315406;315407;315408;315409;315410;315411;315412;315413;315414;315415;315416;315417;315418;315419;315420;315421;315422;315423;315424;315425;315426;315427;315428;315429;315430;315431;315432;315433;315434;315435;315436;315437;315438	424431;424432;424433;424434;424435;424436;424437;424438;424439;424440;424441;424442;424443;424444;424445;424446;424447;424448;424449;424450;424451;424452;424453;424454;424455;424456;424457;424458;424459;424460;424461;424462;424463;424464;424465;424466;424467;424468;424469;424470;424471;424472;424473;424474;424475;424476;424477;424478;424479;424480;424481;424482;424483;424484;424485;424486;424487;424488;424489;424490;424491;424492;424493;424494;424495;424496;424497;424498;424499;424500;424501;424502;424503;424504	424469			74	
TTPEADDWSNPSSEPR	0	Unmodified	1787.7598	0.75983589	2631	Q15120	PDK3	[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	38.719	38.114	2	7.7652E-05	34561	160511_QHF_FH_JSI12i_1	77.597	68.643			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52257	2631	49213	315439;315440	424505;424506	424505			2	
TTPEGSELNIPHVVAWAQIPEETGLPQGR	0	Unmodified	3125.5782	0.57817713	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.542	98.542	3	5.5562E-12	87744	160511_QHF_FH_JSI11i_3	81.904	72.695			1.296	1.2055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.296	1.2055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21562000	10267000	11295000	0	0	0	0	0	0	21562000	10267000	11295000	0	0	0	52258	2278	49214	315441	424507	424507			1	
TTPEYVFHCQSAVMSATFAK	1	Unmodified	2274.0449	0.044924642	2400	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		2							3	1	1	2	1	75.705	70.491	3	7.6136E-33	38140	160513_QHF_FH_JSI10Kac_6	209.67	201.28			0.97777	1.0638	40.134	5	4	Median	2.2403	1.9364	NaN	1	1	Median	1.299	1.5594	NaN	1	1	Median	0.79825	0.80212	12.06	2	1	Median	0.97777	1.0638	NaN	1	1	Median	238540000	126420000	112110000	48385000	16978000	31407000	95170000	53509000	41661000	70026000	42001000	28025000	24957000	13935000	11022000	52259	2400	49215	315442;315443;315444;315445;315446	424508;424509;424510;424511;424512	424512			5	
TTPGKENFR	1	Acetyl (K);Acetyl (Protein N-term)	1132.5513	0.55128709	1767	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	yes	yes	1	1	0	1				By MS/MS	12	0					1								1	44.274	35.294	2	0.024401	16440	160513_QHF_FH_JSI12Kac_2	39.022	20.291			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52260	1767	49216	315447	424513	424513	1784		1	
TTPLKPSPLPVIPDTIK	2	Unmodified	1816.071	0.070986684	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2.25	0.829	1	1	2							1			3	75.269	74.388	2;3	7.1667E-08	61206	160511_QHF_FH_JSI9i_3	98.165	87.968			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52261	3290	49217	315448;315449;315450;315451	424514;424515;424516;424517	424516			4	
TTPLLSFLK	1	Unmodified	1018.6063	0.60628277	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		86.021	85.456	2	0.0033775	75051	160511_QHF_FH_JSI11i_2	60.59	49.717			0.89681	0.88526	17.216	3	0	Plateau	0.78152	0.68666	NaN	1	0	Median	0.75336	0.95351	NaN	1	0	Median	0.91007	0.88526	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38606000	21140000	17466000	12762000	6336100	6426200	11774000	6720800	5053000	14069000	8083000	5986400	0	0	0	52262	4565	49218	315452;315453;315454	424518;424519	424519			2	
TTPNKGNKALK	3	2 Acetyl (K);Acetyl (Protein N-term)	1296.7038	0.70376498	297	O15525	MAFG	Transcription factor MafG	yes	yes	2	1	0	2			By MS/MS		11	0				1								1		44.585	35.528	2	0.0031867	14542	160513_QHF_FH_JSI11Kac_1	56.563	37.783			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52263	297	49219	315455	424520	424520	157;158		1	
TTPNSGDVQVTEDAVR	0	Unmodified	1687.8013	0.80130678	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	39.204	38.747	2	0.0048543	34881	160511_QHF_FH_JSI11i_1	73.466	39.6			0.97888	0.98159	31.199	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82536	0.78726	NaN	1	1	Median	1.1609	1.2239	NaN	1	1	Median	86168000	51311000	34856000	0	0	0	0	0	0	47116000	31127000	15989000	39052000	20184000	18868000	52264	1432	49220	315456;315457	424521;424522	424521			2	
TTPNSGDVQVTEDAVRR	0	Unmodified	1843.9024	0.90241781	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	35.155	34.526	3	1.1904E-05	29384	160511_QHF_FH_JSI11i_2	84.874	77.465			0.95953	1.023	13.131	10	0	Median	1.2308	1.0317	3.2753	2	0	Median	0.9032	1.0761	5.575	2	0	Median	1.3118	1.2369	22.408	3	0	Plateau	0.99126	1.0116	12.797	3	0	Median	1001000000	504630000	496400000	183660000	83244000	100420000	259370000	136720000	122640000	350810000	169570000	181240000	207190000	115090000	92098000	52265	1432	49221	315458;315459;315460;315461;315462;315463;315464;315465;315466;315467	424523;424524;424525;424526;424527;424528;424529;424530;424531;424532;424533;424534;424535;424536;424537;424538;424539;424540;424541	424537			19	
TTPPEAAQNGQSPMAALILVADNAGGSHASK	1	Unmodified	3003.472	0.47199749	3283	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		92.465	92.465	3;4	2.0815E-09	82371	160511_QHF_FH_JSI11i_3	59.598	53.568			0.71581	0.67346	37.644	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71581	0.67346	37.644	2	1	Median	NaN	NaN	NaN	0	0	Median	43873000	26614000	17258000	0	0	0	0	0	0	43873000	26614000	17258000	0	0	0	52266	3283	49222	315468;315469	424542;424543;424544	424542			3	
TTPSATSLPQTVVMTSPVTLTSQTTK	1	Unmodified	2676.3892	0.38916229	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	86.869	86.418	3	4.4754E-21	78851	160511_QHF_FH_JSI11i_1	122.41	106.86			1.0103	0.99785	17.172	4	0	Median	0.98813	0.80349	NaN	1	0	Median	0.8031	0.94452	NaN	1	0	Median	1.2389	1.2053	NaN	1	0	Median	1.033	1.0542	NaN	1	0	Median	278050000	136930000	141120000	51904000	29247000	22657000	73080000	39363000	33717000	86971000	35937000	51034000	66097000	32381000	33716000	52267	1147	49223	315470;315471;315472;315473	424545;424546;424547;424548;424549;424550;424551;424552;424553	424547			9	
TTPSQFSTLK	1	Unmodified	1108.5764	0.57643921	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.222	38.313	2	0.0088417	32735	160511_QHF_FH_JSI11i_2	59.426	51.501			0.56407	0.5982	102.62	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.225	1.2359	NaN	1	1	Median	0.25973	0.28953	NaN	1	1	Median	183420000	137720000	45698000	0	0	0	0	0	0	59522000	33021000	26501000	123900000	104700000	19197000	52268	3063	49224	315474;315475	424554;424555	424555			2	
TTPSVVAFTADGER	0	Unmodified	1449.71	0.70997257	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.76	5.42	10	8	4			1	3	3		5	8	8	8	57.359	54.435	2;3	1.6676E-21	48258	160511_QHF_FH_JSI10i_2	176.8	141.29			0.99486	1.0063	10.156	28	2	Median	1.1928	0.97032	7.5511	5	0	Median	0.82131	0.98785	14.568	8	1	Median	1.0124	1.0084	7.9295	8	1	Median	0.9632	1.0285	9.1221	7	0	Median	14021000000	7045400000	6976100000	3090700000	1389700000	1701000000	3418500000	1861700000	1556800000	3847100000	1831800000	2015300000	3665200000	1962200000	1703000000	52269	1480	49225	315476;315477;315478;315479;315480;315481;315482;315483;315484;315485;315486;315487;315488;315489;315490;315491;315492;315493;315494;315495;315496;315497;315498;315499;315500;315501;315502;315503;315504	424556;424557;424558;424559;424560;424561;424562;424563;424564;424565;424566;424567;424568;424569;424570;424571;424572;424573;424574;424575;424576;424577;424578;424579;424580;424581;424582;424583;424584;424585;424586;424587;424588;424589;424590;424591;424592;424593;424594;424595;424596;424597;424598;424599;424600;424601;424602;424603;424604;424605	424603			48	
TTPSVVAFTADGERLVGMPAK	1	Unmodified	2146.1092	0.10923946	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	2.5	0.5		2	2								2	1	1	84.641	83.92	3	2.0223E-06	70153	160511_QHF_FH_JSI10i_3	76.704	66.647			2.2036	2.531	102.76	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.6657	2.034	92.803	2	0	Median	0.76609	0.69484	NaN	1	0	Median	0.30757	0.33964	NaN	1	0	Median	243800000	108900000	134900000	0	0	0	166430000	57632000	108800000	40494000	23854000	16641000	36871000	27411000	9459800	52270	1480	49226	315505;315506;315507;315508	424606;424607;424608;424609;424610	424608			5	
TTPSYVAFTDTER	0	Unmodified	1486.694	0.69398816	985;954;1827;1416;1108	P0DMV9;P0DMV8;P11142;P54652;P34931;P17066;P48741	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA1L;HSPA6;HSPA7	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.27	11	5	5			4	6	4	2	10	10	7	10	55.466	50.275	2;3	1.8006E-30	44344	160511_QHF_FH_JSI12i_2	185.18	169.55			1.0389	1.0525	14.689	34	10	Median	1.2288	1.084	20.098	9	3	Median	0.84989	1.0128	8.1517	9	4	Median	1.0755	1.0966	11.654	7	1	Median	1.0619	1.1639	11.608	9	2	Median	60605000000	29384000000	31222000000	12197000000	5186700000	7010500000	21287000000	11203000000	10085000000	14089000000	6503100000	7586300000	13031000000	6491200000	6540300000	52271	954;985;1827;1416;1108	49227	315509;315510;315511;315512;315513;315514;315515;315516;315517;315518;315519;315520;315521;315522;315523;315524;315525;315526;315527;315528;315529;315530;315531;315532;315533;315534;315535;315536;315537;315538;315539;315540;315541;315542;315543;315544;315545	424611;424612;424613;424614;424615;424616;424617;424618;424619;424620;424621;424622;424623;424624;424625;424626;424627;424628;424629;424630;424631;424632;424633;424634;424635;424636;424637;424638;424639;424640;424641;424642;424643;424644;424645;424646;424647;424648;424649;424650;424651;424652;424653;424654;424655;424656;424657;424658;424659;424660;424661;424662;424663;424664;424665;424666;424667;424668;424669;424670	424618			59	
TTPSYVAFTDTERLIGDAAK	1	Unmodified	2155.0797	0.079713469	985;954;1827;1416	P0DMV9;P0DMV8;P11142;P54652;P34931	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		86.188	85.817	3	4.453E-05	75572	160511_QHF_FH_JSI9i_2	82.36	73.536			0.13289	0.12302	210.13	3	3	Median	0.078483	0.066417	NaN	1	1	Median	2.7163	3.309	NaN	1	1	Median	0.13289	0.12302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114270000	70969000	43297000	50683000	46762000	3921300	49052000	10938000	38113000	14532000	13269000	1262700	0	0	0	52272	954;985;1827;1416	49228	315546;315547;315548	424671;424672;424673;424674	424672			4	
TTPTPSTNSVLSTSTNR	0	Unmodified	1762.8697	0.86972069	3214	Q7KZI7	MARK2	Serine/threonine-protein kinase MARK2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	39.586	39.077	2	0.0022371	34982	160511_QHF_FH_JSI10i_1	65.563	30.148			0.76333	0.76657	25.528	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98776	0.93346	NaN	1	0	Median	0.65636	0.65669	21.88	2	2	Median	56802000	34101000	22701000	0	0	0	0	0	0	23178000	14721000	8456900	33624000	19380000	14244000	52273	3214	49229	315549;315550;315551;315552	424675;424676;424677;424678;424679	424679			5	
TTPTQPSEQK	1	Unmodified	1115.5459	0.54586736	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.3049	9.0693	2	0.0074105	6905	160511_QHF_FH_JSI10i_1	61.161	43.342			1.3725	1.5991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3725	1.5991	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51106000	24494000	26611000	0	0	0	51106000	24494000	26611000	0	0	0	0	0	0	52274	644	49230	315553	424680	424680			1	
TTPYQIACGISQGLADNTVIAK	1	Unmodified	2320.1733	0.17329628	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			101.18	101.1	3	0.001452	89580	160511_QHF_FH_JSI10i_2	45.205	37.213			1.0848	1.3009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0848	1.3009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154330000	75252000	79076000	0	0	0	154330000	75252000	79076000	0	0	0	0	0	0	52275	1282	49231	315554	424681	424681			1	
TTQEEQLR	0	Unmodified	1003.4934	0.49343786	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.9519	8.5889	2	0.00049486	6250	160511_QHF_FH_JSI11i_1	106.38	75.769			0.85396	0.84546	5.8517	4	0	Median	0.99022	0.82185	NaN	1	0	Median	0.67567	0.77437	NaN	1	0	Median	0.89867	0.87933	NaN	1	0	Median	0.81148	0.86975	NaN	1	0	Median	1181900000	672560000	509380000	325800000	176020000	149780000	321670000	210920000	110750000	255680000	136560000	119130000	278790000	149060000	129720000	52276	1016	49232	315555;315556;315557;315558	424682;424683;424684;424685;424686;424687;424688	424682			7	
TTQETIDK	1	Unmodified	934.46074	0.46074075	2719	Q15847	ADIRF	Adipogenesis regulatory factor	yes	yes	0	0	0	0			By MS/MS		13	0						1						1		10.968	3.644	2	0.021923	4556	160513_QHF_FH_JSI11Kac_3	55.531	40.091			0.83805	0.81783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83805	0.81783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4095900	2435300	1660600	0	0	0	0	0	0	4095900	2435300	1660600	0	0	0	52277	2719	49233	315559	424689	424689			1	
TTQGLTALLLSLK	1	Unmodified	1357.8181	0.81806646	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.38	101.4	2	8.7887E-05	88046	160511_QHF_FH_JSI12i_3	162.22	150.63			2.0765	2.1302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0765	2.1302	NaN	1	1	Median	147440000	49138000	98297000	0	0	0	0	0	0	0	0	0	147440000	49138000	98297000	52278	4967	49234	315560	424690	424690			1	
TTQIINITMTK	1	Unmodified	1262.6904	0.69042311	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	59.267	58.743	2	0.0020482	53079	160511_QHF_FH_JSI10i_1	73.885	50.457			0.99363	1.0692	62.255	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59586	0.68846	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6569	1.6605	NaN	1	1	Median	54331000	28175000	26156000	0	0	0	29292000	20249000	9043000	0	0	0	25039000	7925400	17113000	52279	2587	49235	315561;315562	424691;424692	424692			2	
TTQIINITMTK	1	Oxidation (M)	1278.6853	0.68533773	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		14	0							2				1	1		57.128	46.317	2	0.002564	25569	160513_QHF_FH_JSI10Kac_4	65.719	54.89			1.0586	1.1541	0.61944	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95902	1.149	NaN	1	0	Median	1.1685	1.1592	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8710100	4100400	4609700	0	0	0	4368300	2193300	2175000	4341800	1907100	2434700	0	0	0	52280	2587	49235	315563;315564	424693;424694	424693		2040	2	
TTQIPQWCVEYMR	0	Unmodified	1710.7858	0.78579683	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	71.833	70.881	2	3.5538E-05	61139	160511_QHF_FH_JSI12i_2	136.02	127.07			1.0373	1.0818	49.505	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7504	0.7623	NaN	1	1	Median	1.4338	1.5353	NaN	1	1	Median	101000000	54799000	46205000	0	0	0	0	0	0	59162000	37383000	21779000	41842000	17416000	24426000	52281	300	49236	315565;315566	424695;424696	424695			2	
TTQIPQYLFEEGYTNK	1	Unmodified	1930.9313	0.93125832	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	3	1	75.812	75.329	2	7.8104E-13	68671	160511_QHF_FH_JSI11i_1	116.01	77.377			0.96897	0.99585	7.7308	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.935	1.0534	NaN	1	0	Median	0.96897	0.9414	NaN	1	0	Median	1.0525	1.0917	NaN	1	0	Median	104430000	50696000	53734000	5321300	0	5321300	33582000	18582000	14999000	34827000	16344000	18483000	30699000	15770000	14929000	52282	398	49237	315567;315568;315569;315570;315571;315572	424697;424698;424699;424700;424701;424702;424703;424704;424705;424706	424700			10	
TTQIPQYLYEGGISR	0	Unmodified	1724.8733	0.87334951	4748	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.67	0.471	1	2								1		1	1	66.824	66.057	2	0.00097819	57655	160511_QHF_FH_JSI11i_2	74.326	58.787			1.4847	1.3635	1.8191	2	2	Median	1.5868	1.3461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3891	1.3811	NaN	1	1	Median	25337000	10813000	14525000	9319400	2368500	6950900	0	0	0	0	0	0	16018000	8444100	7573900	52283	4748	49238	315573;315574;315575	424707;424708;424709	424709			3	
TTQIYTYFVYK	1	Unmodified	1425.718	0.71801807	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.64	6.97		5							6	3	2	4	2	75.861	71.669	2	1.8696E-58	38637	160513_QHF_FH_JSI10Kac_6	226.71	208.89			0.9555	1.018	6.4806	9	5	Median	1.1678	1.016	0.28094	2	1	Median	0.86075	1.0427	14.074	2	0	Median	1.068	1.0211	7.2754	3	3	Plateau	0.94732	1.0103	3.3204	2	1	Median	1500600000	787040000	713530000	304240000	142130000	162120000	513830000	306270000	207560000	422490000	194970000	227520000	260010000	143680000	116330000	52284	5285	49239	315576;315577;315578;315579;315580;315581;315582;315583;315584;315585;315586	424710;424711;424712;424713;424714;424715;424716;424717;424718;424719;424720;424721;424722;424723;424724;424725	424725			16	
TTQLGPGR	0	Unmodified	828.44537	0.44536545	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7	5.73		2	1				2			1		1	3	11.904	8.637	2	0.0010191	7728	160511_QHF_FH_JSI9i_2	114.72	62.038			1.0559	0.91146	26.586	5	2	Median	1.0776	0.91146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1981	1.1728	NaN	1	0	Median	0.68436	0.72684	31.786	3	1	Plateau	663410000	410050000	253360000	214870000	119110000	95768000	0	0	0	15262000	7918000	7343600	433270000	283020000	150250000	52285	5251	49240	315587;315588;315589;315590;315591	424726;424727;424728;424729;424730;424731;424732	424729			7	
TTQLLFLK	1	Unmodified	962.58007	0.58006802	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	12.3	5.56		2					1	3	3	2	2	4	1	74.965	65.122	2	1.1072E-05	57210	160511_QHF_FH_JSI11i_2	119.29	97.16			1.2032	1.0767	14.239	6	0	Median	1.2644	1.0767	12.453	2	0	Median	0.80286	0.95745	NaN	1	0	Median	1.111	1.0793	17.171	2	0	Median	1.2361	1.3285	NaN	1	0	Median	52338000	21729000	30608000	15180000	5841400	9338700	3789200	2131400	1657800	27347000	11284000	16063000	6021400	2472700	3548800	52286	615	49241	315592;315593;315594;315595;315596;315597;315598;315599;315600	424733;424734;424735;424736;424737;424738	424735			6	
TTQQIDLQGPGPWGFR	0	Acetyl (Protein N-term)	1841.906	0.90604662	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	92.371	91.848	2	5.4113E-14	83736	160511_QHF_FH_JSI11i_1	197.07	176.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52287	98	49242	315601;315602;315603	424739;424740;424741;424742;424743;424744;424745	424740			7	
TTQSGQMSGEGK	1	Unmodified	1209.5296	0.52956537	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.09	5		1			2				2	1	3	2	6.14	3.8761	2	1.4929E-22	3627	160511_QHF_FH_JSI10i_1	169.82	160.23			0.86504	0.92218	33.869	7	4	Median	0.95193	0.76689	NaN	1	0	Median	0.78922	0.92922	NaN	1	0	Median	0.75893	0.73079	49.284	3	3	Plateau	0.70512	0.74295	30.563	2	1	Median	1623900000	904310000	719580000	262230000	150580000	111650000	398360000	232540000	165820000	616210000	359510000	256700000	347100000	161680000	185420000	52288	2746	49243	315604;315605;315606;315607;315608;315609;315610;315611	424746;424747;424748;424749;424750;424751;424752;424753;424754;424755	424752			10	
TTQSGQMSGEGK	1	Oxidation (M)	1225.5245	0.52447999	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				6.2022	5.5957	2	0.013386	3388	160511_QHF_FH_JSI9i_1	54.343	39.677			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52289	2746	49243	315612	424756	424756		2125	1	
TTQVPQFILDDFIQNDR	0	Unmodified	2049.0167	0.016719282	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.93	0.68	4	8	3							2	4	5	4	101.36	101.29	2;3	5.993E-137	89072	160511_QHF_FH_JSI9i_2	284.24	263.82			1.0189	1.0743	29.82	15	2	Median	1.0133	0.85518	0.15018	2	0	Median	0.63737	1.0635	39.469	4	1	Linear	1.2228	1.2269	19.343	5	1	Median	0.94608	1.0551	30.264	4	0	Median	4500600000	2191100000	2309500000	752130000	354080000	398060000	1220300000	650220000	570100000	1236000000	547950000	688050000	1292100000	638810000	653290000	52290	2265	49244	315613;315614;315615;315616;315617;315618;315619;315620;315621;315622;315623;315624;315625;315626;315627	424757;424758;424759;424760;424761;424762;424763;424764;424765;424766;424767;424768	424762			12	
TTQVTQFILDNYIER	0	Unmodified	1839.9367	0.93667805	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			92.868	91.846	2;3	8.2544E-40	76598	160511_QHF_FH_JSI10i_3	200.44	177.07			0.93831	0.93138	12.837	4	0	Median	1.2085	1.0233	10.142	2	0	Median	0.72768	0.85657	8.678	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56835000	28385000	28450000	23739000	8917200	14822000	33096000	19468000	13628000	0	0	0	0	0	0	52291	4681	49245	315628;315629;315630;315631	424769;424770;424771;424772;424773;424774	424772			6	
TTRYDIDMTK	1	Unmodified	1242.5914	0.59143734	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	26.354	26.336	3	0.003162	21976	160511_QHF_FH_JSI12i_3	58.511	44.92			0.61244	0.59454	77.369	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1081	1.0275	NaN	1	0	Median	0.33849	0.34402	NaN	1	1	Median	169230000	91263000	77963000	0	0	0	0	0	0	112030000	47828000	64203000	57195000	43435000	13760000	52292	108	49246	315632;315633	424775;424776	424776			1	
TTRYEFEQQR	0	Unmodified	1356.6422	0.64222736	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				17.441	16.328	3	0.0054088	13020	160511_QHF_FH_JSI9i_3	35.71	23.442			1.4427	1.1489	NaN	1	0	Median	1.4427	1.1489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52615000	21594000	31021000	52615000	21594000	31021000	0	0	0	0	0	0	0	0	0	52293	2832	49247	315634	424777	424777			1	
TTSAGTGGMWR	0	Unmodified	1123.508	0.50804206	1910	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		5	4						2	2	3	3	3	25.944	23.536	2	2.4395E-09	20493	160511_QHF_FH_JSI10i_2	129.63	119.39			1.0608	1.0525	18.353	10	0	Median	1.1878	1.004	10.049	2	0	Median	0.83247	1.0053	16.926	2	0	Median	1.1199	1.1081	5.1466	3	0	Median	0.9342	0.95045	35.176	3	0	Median	1899100000	928140000	970920000	236470000	111100000	125370000	425800000	223290000	202510000	573660000	254220000	319440000	663140000	339530000	323600000	52294	1910	49248	315635;315636;315637;315638;315639;315640;315641;315642;315643;315644;315645	424778;424779;424780;424781;424782;424783;424784;424785;424786;424787;424788;424789;424790;424791;424792	424789			15	
TTSAGTGGMWR	0	Oxidation (M)	1139.503	0.50295669	1910	P60468	SEC61B	Protein transport protein Sec61 subunit beta	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		13.615	13.615	2	0.025497	11001	160511_QHF_FH_JSI11i_3	47.187	34.15			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52295	1910	49248	315646	424793	424793			1	
TTSDLLLVMSNLYSLNAGSLTMSEK	1	Unmodified	2687.3398	0.33976926	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3	1	1	1	1	99.305	93.203	3	7.2526E-19	53931	160513_QHF_FH_JSI10Kac_6	112.23	90.361			0.9495	0.88629	18.266	4	3	Median	1.0108	0.86961	NaN	1	1	Median	0.62691	0.73322	NaN	1	0	Median	0.8919	0.90329	NaN	1	1	Median	1.0845	1.1425	NaN	1	1	Median	516920000	298420000	218500000	86798000	53319000	33479000	105150000	71298000	33850000	219230000	129840000	89396000	105740000	43967000	61771000	52296	2772	49249	315647;315648;315649;315650	424794;424795;424796;424797	424797			4	
TTSDYFLLQVLLK	1	Unmodified	1539.8548	0.8548459	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.829	88.421	2	2.3823E-63	50025	160513_QHF_FH_JSI9Kac_6	229.53	209.87			0.86393	0.74756	13.737	4	0	Linear	1.001	0.83699	NaN	1	0	Median	0.82264	0.96278	NaN	1	0	Median	0.76076	0.71466	NaN	1	0	Median	0.90729	0.94492	NaN	1	0	Median	504700000	267600000	237110000	134190000	68432000	65756000	104900000	60257000	44647000	143680000	73734000	69950000	121930000	65173000	56755000	52297	5233	49250	315651;315652;315653;315654	424798;424799;424800;424801	424798			4	
TTSEIFLSSTAEGADLR	0	Unmodified	1796.8792	0.87922275	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	66.973	66.351	2	2.1957E-05	60463	160511_QHF_FH_JSI12i_1	98.531	73.145			0.52735	0.53931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52735	0.53931	NaN	1	1	Median	69520000	52290000	17230000	0	0	0	0	0	0	0	0	0	69520000	52290000	17230000	52298	3434	49251	315655	424802	424802			1	
TTSESSSSPSASLK	1	Unmodified	1367.6416	0.64161824	4005	Q96CB8	INTS12	Integrator complex subunit 12	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	14.295	13.866	2	7.5716E-06	11625	160511_QHF_FH_JSI12i_1	86.463	62.241			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52299	4005	49252	315656;315657	424803;424804	424804			2	
TTSFAESCKPVQQPSAFGSMK	2	Unmodified	2287.0613	0.061302988	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		49.763	49.763	3	1.7972E-07	43979	160511_QHF_FH_JSI11i_3	87.49	78.207			0.78487	0.7174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78487	0.7174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39147000	22811000	16337000	0	0	0	0	0	0	39147000	22811000	16337000	0	0	0	52300	1689	49253	315658	424805;424806;424807	424806			3	
TTSGALFPSLVPGSR	0	Acetyl (Protein N-term)	1530.8042	0.80420731	2726	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.424	94.08	2	7.3726E-08	85570	160511_QHF_FH_JSI11i_1	164.04	144.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52301	2726	49254	315659;315660;315661;315662	424808;424809;424810;424811;424812	424808			5	
TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR	0	Unmodified	3724.7129	0.71289229	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0		By MS/MS	By MS/MS		1.25	0.433	3	1									1	3		98.188	98.063	3	1.9564E-32	89062	160511_QHF_FH_JSI11i_1	108.92	104.29		+	0.96066	1.0741	12.076	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96066	1.1182	NaN	1	0	Median	1.0068	0.97863	13.161	2	0	Median	NaN	NaN	NaN	0	0	Median	162110000	85716000	76397000	0	0	0	105070000	54585000	50484000	57043000	31131000	25913000	0	0	0	52302	51	49255	315663;315664;315665;315666	424813;424814;424815;424816;424817;424818;424819	424814			7	
TTSILCLAR	0	Unmodified	1033.559	0.559015	1429	P35250	RFC2	Replication factor C subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	53.258	53.023	2	0.021805	45479	160511_QHF_FH_JSI12i_3	49.833	16.941			1.2785	1.3103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2785	1.3103	NaN	1	1	Median	137010000	62251000	74758000	0	0	0	0	0	0	0	0	0	137010000	62251000	74758000	52303	1429	49256	315667	424820	424820			1	
TTSNNTYEVEK	1	Unmodified	1284.5834	0.58337508	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.049	13.62	2	0.0024884	11383	160511_QHF_FH_JSI12i_1	72.2	57.994			0.59951	0.62351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59951	0.62351	NaN	1	1	Median	46243000	23903000	22341000	0	0	0	0	0	0	0	0	0	46243000	23903000	22341000	52304	207	49257	315668	424821	424821			1	
TTSNTLHYIHIEQLDK	1	Unmodified	1911.969	0.96904081	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		9.5	6.5			1						1	1		1		56.322	51.776	4	0.013761	45800	160511_QHF_FH_JSI11i_3	40.186	34.282			1.092	0.95827	27.128	2	1	Median	1.423	1.1609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83801	0.79101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51906000	26491000	25415000	16008000	6445800	9562200	0	0	0	35898000	20045000	15852000	0	0	0	52305	3290	49258	315669;315670	424822;424823	424822			1	
TTSQKHR	1	Acetyl (K);Acetyl (Protein N-term)	940.47264	0.47264284	541	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	yes	yes	1	1	0	1		By MS/MS			13	0						1					1			5.513	-1.8108	2	0.007365	1792	160513_QHF_FH_JSI10Kac_3	69.998	51.963			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52306	541	49259	315671	424824	424824	283		1	
TTSSAIYMNLASHIQPGTVNR	0	Unmodified	2260.127	0.12701479	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			75.659	68.172	3	1.0538E-08	37514	160513_QHF_FH_JSI10Kac_6	143.91	130.5			1.562	1.5758	40.748	2	1	Median	1.3839	1.1814	NaN	1	0	Median	1.7632	2.1021	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93266000	34099000	59167000	17592000	7107900	10484000	75675000	26992000	48683000	0	0	0	0	0	0	52307	3813	49260	315672;315673	424825;424826	424826			1	
TTSSANNPNLMYQDECDR	0	Unmodified	2114.8633	0.86333146	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	34.328	33.746	2	6.7978E-13	30513	160511_QHF_FH_JSI12i_1	177.84	164.13			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8949300	0	8949300	0	0	0	0	0	0	0	0	0	8949300	0	8949300	52308	3893	49261	315674	424827	424827			1	
TTSSANNPNLMYQDECDRR	0	Unmodified	2270.9644	0.96444249	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	2	3	28.443	27.873	3	0.00078742	23940	160511_QHF_FH_JSI11i_3	48.053	45			1.0796	1.131	33.199	8	0	Median	0.84406	0.69776	NaN	1	0	Median	0.78513	0.93933	14.48	2	0	Median	1.2734	1.2358	0.74955	2	0	Median	1.53	1.6241	33.709	3	0	Median	232820000	107540000	125280000	26233000	13683000	12550000	77314000	38941000	38373000	57042000	25223000	31819000	72231000	29695000	42537000	52309	3893	49262	315675;315676;315677;315678;315679;315680;315681;315682	424828;424829;424830;424831;424832;424833;424834;424835;424836	424828			9	
TTSSTDGPK	1	Unmodified	892.41379	0.41379055	5165	Q9NZN8	CNOT2	CCR4-NOT transcription complex subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	4.5708	4.3441	2	0.00034516	2175	160511_QHF_FH_JSI10i_1	82.452	56.716			1.0094	1.0373	11.854	3	1	Median	NaN	NaN	NaN	0	0	Median	1.032	1.2093	NaN	1	0	Median	0.97232	0.95773	NaN	1	0	Median	1.0094	1.0373	NaN	1	1	Median	406760000	218720000	188040000	0	0	0	135510000	68114000	67395000	137130000	74214000	62918000	134120000	76397000	57724000	52310	5165	49263	315683;315684;315685	424837;424838;424839	424839			3	
TTSWLDPR	0	Unmodified	974.48214	0.48214489	1598	P46937;Q86UL8;Q96QZ7	YAP1;MAGI2;MAGI1	Transcriptional coactivator YAP1;Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2;Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1	yes	no	0	0	0	0	By MS/MS				2	0		1								1				42.15	41.1	2	0.060866	36078	160511_QHF_FH_JSI9i_2	43.858	0			1.25	1.073	NaN	1	1	Median	1.25	1.073	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37384000	17720000	19664000	37384000	17720000	19664000	0	0	0	0	0	0	0	0	0	52311	1598	49264	315686	424840	424840			1	
TTTAAAVASTGPSSR	0	Unmodified	1376.6896	0.68957148	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.78	4	6				3	3			2	4	5	5	21.104	17.602	2	4.0207E-53	14936	160511_QHF_FH_JSI9i_1	225.15	182.43			1.01	1.0239	52.624	15	3	Median	1.2235	1.0234	4.1345	2	0	Median	0.86145	1.0154	15.769	4	0	Median	0.94113	0.95447	76.645	5	2	Median	1.1193	1.2113	15.546	4	1	Median	1362900000	742780000	620080000	264290000	119920000	144370000	313050000	168520000	144530000	484490000	292360000	192130000	301020000	161970000	139050000	52312	1298	49265	315687;315688;315689;315690;315691;315692;315693;315694;315695;315696;315697;315698;315699;315700;315701;315702	424841;424842;424843;424844;424845;424846;424847;424848;424849;424850;424851;424852;424853;424854;424855;424856;424857;424858;424859;424860;424861;424862;424863;424864;424865;424866;424867;424868	424856			28	
TTTAQDLVQHFK	1	Unmodified	1387.7096	0.70957864	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	49.07	48.832	3	5.1387E-05	41796	160511_QHF_FH_JSI12i_3	93.766	79.802			1.1872	1.2391	19.613	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1872	1.2391	19.613	2	2	Median	97008000	36403000	60605000	0	0	0	0	0	0	0	0	0	97008000	36403000	60605000	52313	4205	49266	315703;315704	424869;424870	424869			2	
TTTESEVMK	1	Oxidation (M)	1040.4696	0.46959087	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.66	5				1	2				1	2	3	2	9.535	6.5597	2	0.00052204	11356	160511_QHF_FH_JSI12i_1	82.426	58.271			1.1555	1.0939	16.646	8	0	Median	1.2648	1.0322	NaN	1	0	Median	0.87867	1.0447	8.6543	2	0	Median	1.2817	1.2441	11.585	3	0	Median	1.266	1.3274	29.488	2	0	Median	728590000	359510000	369080000	102530000	46795000	55730000	133660000	69410000	64247000	128800000	63687000	65118000	363600000	179620000	183980000	52314	1004	49267	315705;315706;315707;315708;315709;315710;315711;315712	424871;424872;424873;424874;424875;424876;424877	424875		589	7	
TTTESEVMK	1	Unmodified	1024.4747	0.47467625	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	15.88	13.113	2	4.8113E-08	10855	160511_QHF_FH_JSI9i_1	152.47	125.86			1.5393	1.5012	41.279	6	3	Median	1.2694	1.0305	NaN	1	1	Median	2.4239	2.8255	11.194	2	0	Median	1.5393	1.5012	0.8526	2	1	Median	1.294	1.3839	NaN	1	1	Median	4718400000	1677400000	3041000000	635730000	219540000	416190000	1467400000	465870000	1001600000	1135200000	469740000	665460000	1480100000	522270000	957790000	52315	1004	49267	315713;315714;315715;315716;315717;315718	424878;424879;424880;424881;424882	424882			4	
TTTGDVQVLGLVHTQK	1	Unmodified	1695.9155	0.91554867	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		1	2	2	2	61.591	56.443	3	1.1906E-07	48254	160511_QHF_FH_JSI12i_2	131.61	125.4			0.8727	1.0038	15.177	7	1	Median	0.8727	0.73106	NaN	1	1	Median	0.76294	0.9141	13.24	2	0	Median	0.94806	0.95038	10.841	2	0	Median	0.9968	1.0901	0.56818	2	0	Median	490490000	247080000	243400000	74146000	39446000	34700000	123540000	68377000	55167000	169910000	82003000	87909000	122890000	57258000	65629000	52316	1005	49268	315719;315720;315721;315722;315723;315724;315725	424883;424884;424885;424886;424887;424888;424889;424890;424891	424883			9	
TTTGLDSAVDPVQMK	1	Unmodified	1561.7658	0.76577289	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	56.092	55.349	2	1.1728E-06	50098	160511_QHF_FH_JSI11i_1	158.42	134.57			1.0866	0.85869	3.2263	3	2	Plateau	1.0953	0.89611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86669	0.84118	NaN	1	1	Median	0.8269	0.85869	NaN	1	1	Median	237560000	121960000	115600000	91519000	40928000	50591000	0	0	0	81744000	43010000	38734000	64296000	38023000	26273000	52317	4261	49269	315726;315727;315728	424892;424893;424894	424892			3	
TTTGNKVFGALK	2	Acetyl (K)	1277.698	0.69795133	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		63.779	52.895	2	0.040478	29745	160513_QHF_FH_JSI11Kac_4	44.309	39.858			0.70842	0.7659	75.043	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1073	1.302	NaN	1	0	Median	0.45324	0.45053	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23741000	16140000	7601000	0	0	0	5089000	3236600	1852300	18652000	12904000	5748700	0	0	0	52318	1590	49270	315729;315730	424895	424895			1	
TTTGSYIANR	0	Unmodified	1082.5356	0.53563702	1302	P28072	PSMB6	Proteasome subunit beta type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	18.633	15.011	2	1.4221E-34	12936	160511_QHF_FH_JSI11i_3	210.01	192.63			0.97492	1.067	9.9047	19	0	Median	1.3257	1.0976	4.8406	4	0	Median	0.87725	1.0413	10.737	5	0	Median	1.0349	1.0096	11.519	5	0	Median	0.96972	1.0904	8.8157	5	0	Median	4036300000	2058400000	1977900000	725550000	319960000	405590000	1057100000	591260000	465820000	1158200000	566710000	591480000	1095400000	580420000	515010000	52319	1302	49271	315731;315732;315733;315734;315735;315736;315737;315738;315739;315740;315741;315742;315743;315744;315745;315746;315747;315748;315749	424896;424897;424898;424899;424900;424901;424902;424903;424904;424905;424906;424907;424908;424909;424910;424911;424912;424913;424914;424915;424916;424917;424918;424919;424920;424921;424922;424923;424924;424925	424896			30	
TTTHVPPELGQIMDSETFEK	1	Unmodified	2259.0729	0.072913532	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	3	2	77.951	77.334	3	1.3287E-09	68016	160511_QHF_FH_JSI9i_2	113.49	104.21			1.1184	1.1113	10.694	8	3	Median	1.3355	1.1334	16.442	2	1	Median	0.8557	1.0295	NaN	1	0	Median	1.1176	1.1375	14.271	3	1	Median	1.0402	1.1212	4.5581	2	1	Median	1281100000	637110000	643980000	303970000	128840000	175130000	233380000	129040000	104330000	449250000	226410000	222840000	294490000	152810000	141680000	52320	575	49272	315750;315751;315752;315753;315754;315755;315756;315757	424926;424927;424928;424929;424930;424931;424932;424933;424934;424935;424936;424937;424938;424939	424932			14	
TTTIAVEVK	1	Unmodified	960.54916	0.54916182	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	34.02	33.631	2	0.00018073	30517	160511_QHF_FH_JSI12i_1	104.01	89.232			0.17763	0.2047	61.445	3	3	Median	NaN	NaN	NaN	0	0	Median	0.17763	0.2047	NaN	1	1	Median	0.13612	0.13131	NaN	1	1	Median	0.43797	0.44227	NaN	1	1	Median	711010000	583920000	127080000	0	0	0	315720000	260090000	55630000	215290000	173670000	41626000	179990000	150170000	29827000	52321	2147	49273	315758;315759;315760	424940;424941;424942	424941			3	
TTTIAVEVKK	2	Unmodified	1088.6441	0.64412484	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.32		3	1					3		1	2	3	1	29.394	25.043	2;3	0.00064201	20551	160511_QHF_FH_JSI12i_3	90.108	29.561			0.64603	0.6057	93.077	6	3	Median	0.89411	0.74759	NaN	1	0	Median	0.37766	0.45503	109.69	2	1	Median	0.28627	0.28738	157.29	2	1	Median	0.49988	0.49075	NaN	1	1	Median	1113100000	1060900000	52180000	4379300	1957500	2421800	277280000	258350000	18933000	798650000	777680000	20971000	32817000	22962000	9854300	52322	2147	49274	315761;315762;315763;315764;315765;315766;315767	424943;424944;424945;424946;424947;424948;424949	424949			7	
TTTLSGTAPAAGVVPSR	0	Unmodified	1584.8471	0.84713476	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.68	8	6				4	3			3	5	6	7	49.232	45.005	2;3	1.4615E-65	41090	160511_QHF_FH_JSI12i_1	278.46	264.65			0.95127	1.008	14.131	16	1	Median	1.1782	0.97012	16.199	3	1	Median	0.8572	1.0147	17.701	5	0	Median	1.0097	0.98846	4.8667	4	0	Median	0.98182	1.0627	17.075	4	0	Median	1867200000	896200000	971050000	426170000	172040000	254130000	504460000	270350000	234110000	455490000	223710000	231780000	481130000	230100000	251030000	52323	1298	49275	315768;315769;315770;315771;315772;315773;315774;315775;315776;315777;315778;315779;315780;315781;315782;315783;315784;315785;315786;315787;315788	424950;424951;424952;424953;424954;424955;424956;424957;424958;424959;424960;424961;424962;424963;424964;424965;424966;424967;424968;424969;424970;424971;424972;424973;424974;424975;424976	424955			25	
TTTNVLGDSLGAGIVEHLSR	0	Unmodified	2039.0647	0.064732107	1551	P43003	SLC1A3	Excitatory amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.33	0.471		2	1							1	2			83.561	82.73	3	1.3773E-06	72990	160511_QHF_FH_JSI9i_2	87.062	72.589			1.3077	1.5945	24.373	3	1	Median	1.9094	1.6141	NaN	1	0	Median	1.0913	1.2951	29.41	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186490000	86053000	100430000	71735000	27176000	44559000	114750000	58877000	55874000	0	0	0	0	0	0	52324	1551	49276	315789;315790;315791	424977;424978;424979;424980;424981;424982	424979			6	
TTTPGETK	1	Unmodified	833.41306	0.41306227	5049	Q9NVT9	ARMC1	Armadillo repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	5.5307	5.2928	2	0.0006504	3302	160511_QHF_FH_JSI12i_1	96.492	29.457			0.70245	0.80624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70245	0.80624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	320070000	160350000	159720000	0	0	0	320070000	160350000	159720000	0	0	0	0	0	0	52325	5049	49277	315792;315793;315794	424983;424984;424985	424983			3	
TTTPGPSLSQGVSVDEK	1	Unmodified	1701.8421	0.84210896	462	O60934	NBN	Nibrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	45.326	44.562	2	8.2965E-06	39557	160511_QHF_FH_JSI9i_1	107.45	90.609			1.0846	1.2701	22.468	3	2	Plateau	1.5065	1.2494	NaN	1	1	Median	1.0846	1.2701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81494	0.85384	NaN	1	1	Median	96711000	39752000	56959000	33462000	8471700	24991000	42064000	20314000	21750000	0	0	0	21184000	10967000	10217000	52326	462	49278	315795;315796;315797	424986;424987;424988;424989	424989			4	
TTTPNAQATR	0	Unmodified	1059.5309	0.530886	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				8.1101	7.4259	2	0.046372	4995	160511_QHF_FH_JSI9i_1	36.381	19.908			1.3346	1.099	NaN	1	0	Median	1.3346	1.099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43649000	19164000	24485000	43649000	19164000	24485000	0	0	0	0	0	0	0	0	0	52327	893	49279	315798	424990	424990			1	
TTTPQQTK	1	Unmodified	903.46616	0.46616048	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	2	2	1	5.2895	2.6564	2	0.00047596	2576	160511_QHF_FH_JSI9i_1	107.01	42.8			1.0483	1.0809	9.7358	6	0	Median	1.4633	1.2068	NaN	1	0	Median	0.8972	1.0762	6.3284	2	0	Median	1.0483	1.0239	1.9426	2	0	Median	1.2348	1.2834	NaN	1	0	Median	2518800000	1132300000	1386500000	573220000	241650000	331570000	699260000	352280000	346990000	693460000	303780000	389680000	552880000	234600000	318280000	52328	1872	49280	315799;315800;315801;315802;315803;315804	424991;424992;424993;424994;424995;424996;424997;424998;424999;425000;425001	425001			11	
TTTPYFL	0	Unmodified	841.42217	0.4221704	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				71.715	70.77	1	0.029639	62859	160511_QHF_FH_JSI9i_1	117.54	107.07			1.1082	0.89053	NaN	1	1	Median	1.1082	0.89053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59828000	28444000	31384000	59828000	28444000	31384000	0	0	0	0	0	0	0	0	0	52329	160	49281	315805	425002	425002			1	
TTTSSGGLTISSLLK	1	Unmodified	1464.8035	0.80353861	2978	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.202	74.569	2	0.0010524	65462	160511_QHF_FH_JSI11i_2	64.827	55.139			0.85327	0.8663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85327	0.8663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19234000	11602000	7632500	0	0	0	0	0	0	19234000	11602000	7632500	0	0	0	52330	2978	49282	315806;315807;315808	425003;425004;425005	425004			3	
TTTTAVISK	1	Unmodified	920.51786	0.51786169	1801	P53602	MVD	Diphosphomevalonate decarboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.4	16.919	2	0.00033494	14524	160511_QHF_FH_JSI12i_1	82.645	71.772			1.1716	1.1973	9.9013	4	0	Median	1.5887	1.314	NaN	1	0	Median	0.90135	1.0553	NaN	1	0	Median	1.1559	1.1384	NaN	1	0	Median	1.1876	1.2593	NaN	1	0	Median	702620000	348950000	353670000	197120000	87532000	109580000	160270000	79396000	80877000	137180000	62944000	74236000	208060000	119080000	88978000	52331	1801	49283	315809;315810;315811;315812	425006;425007;425008;425009	425007			4	
TTTTLIEPIR	0	Unmodified	1143.6499	0.6499385	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	49.467	48.72	2	0.00033508	43931	160511_QHF_FH_JSI11i_1	90.906	80.943			1.1632	1.1562	15.645	6	0	Median	1.2009	1.0054	NaN	1	0	Median	0.82894	0.97136	NaN	1	0	Median	1.3718	1.3248	17.685	2	0	Median	1.1227	1.187	5.2806	2	0	Median	178170000	91107000	87067000	26590000	12807000	13783000	27968000	14671000	13297000	68250000	33551000	34699000	55366000	30078000	25289000	52332	482	49284	315813;315814;315815;315816;315817;315818	425010;425011;425012;425013;425014;425015;425016;425017	425010			8	
TTTTNTQVEGDDEAAFLER	0	Unmodified	2096.9498	0.94982151	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	53.634	52.998	2;3	1.9467E-184	47106	160511_QHF_FH_JSI9i_1	320.64	304.5			1.1708	0.88655	27.631	9	4	Linear	1.6099	1.3048	37.874	2	0	Median	0.89367	1.0518	1.0328	2	2	Median	1.1682	1.1266	38.33	3	2	Plateau	1.1172	1.1363	21.676	2	0	Median	1379500000	675760000	703730000	220030000	99370000	120660000	423860000	237830000	186030000	487600000	224360000	263240000	248010000	114200000	133810000	52333	2233	49285	315819;315820;315821;315822;315823;315824;315825;315826;315827	425018;425019;425020;425021;425022;425023;425024;425025;425026;425027	425026			8	
TTTTPGR	0	Unmodified	732.37662	0.37661719	1109	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	3.8	5.11	3	1					1			1	2	1	1	5.0575	3.2248	2	0.02359	1700	160513_QHF_FH_JSI11Kac_4	66.993	27.33			0.78898	0.85209	19.342	5	0	Median	0.8453	0.69976	NaN	1	0	Median	0.73734	0.89143	6.3843	2	0	Median	1.1959	1.1895	NaN	1	0	Median	0.7878	0.83803	NaN	1	0	Median	2415000000	1370000000	1045100000	528190000	293770000	234420000	937900000	568350000	369560000	21026000	9337600	11688000	927900000	498500000	429410000	52334	1109	49286	315828;315829;315830;315831;315832	425028;425029	425028			2	
TTTTTFK	1	Acetyl (Protein N-term)	840.4229	0.42289868	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	0	1	0	0	By MS/MS				1	0	1									1				24.704	23.478	2	0.044739	20075	160511_QHF_FH_JSI9i_1	32.355	22.605			10.02	8.5528	NaN	1	1	Median	10.02	8.5528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65602000	7533600	58069000	65602000	7533600	58069000	0	0	0	0	0	0	0	0	0	52335	5362	49287	315833	425030	425030			1	
TTTTTFKGVDPNSR	1	Acetyl (K);Acetyl (Protein N-term)	1607.7791	0.77911477	5362	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	yes	yes	1	1	0	1		By MS/MS	By MS/MS	By MS/MS	11.2	0.433				3	1						1	1	2	62.252	52.795	2	0.0012793	21297	160513_QHF_FH_JSI12Kacf_1	66.289	59.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52336	5362	49288	315834;315835;315836;315837	425031;425032;425033;425034	425031	3371		4	
TTTVIFYPK	1	Unmodified	1068.5855	0.58554733	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.8	5.24		2					3	4		2	2	2	3	61.926	53.27	2	5.8767E-08	29994	160513_QHF_FH_JSI11Kac_4	145.63	135.65			0.97557	0.97014	16.468	9	0	Median	0.91422	0.7834	19.776	2	0	Median	0.85072	1.0046	11.99	2	0	Median	1.0198	1.0163	6.5709	2	0	Median	1.0137	1.113	16.666	3	0	Median	169790000	87026000	82768000	40690000	18909000	21782000	38172000	20877000	17295000	36833000	19693000	17140000	54099000	27547000	26552000	52337	3770	49289	315838;315839;315840;315841;315842;315843;315844;315845;315846	425035;425036;425037;425038;425039;425040;425041;425042;425043;425044;425045	425039			10	
TTTVNIGSISTADGSALVK	1	Unmodified	1833.9684	0.96837211	3977	Q96B26	EXOSC8	Exosome complex component RRP43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.7	69.15	2;3	2.9741E-24	62551	160511_QHF_FH_JSI10i_1	211.13	194.87			0.92044	0.92281	10.17	8	1	Median	1.2301	1.0038	6.0731	2	0	Median	0.70338	0.83197	5.4384	2	0	Median	1.0032	0.97732	2.1915	2	1	Median	0.80397	0.83788	7.8302	2	0	Median	357580000	183410000	174170000	83956000	36391000	47565000	96382000	52522000	43859000	95638000	47886000	47752000	81605000	46608000	34997000	52338	3977	49290	315847;315848;315849;315850;315851;315852;315853;315854	425046;425047;425048;425049;425050;425051;425052;425053;425054;425055;425056	425052			11	
TTTVVEIILQAVK	1	Unmodified	1413.8443	0.84428121	1482	P38935	IGHMBP2	DNA-binding protein SMUBP-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	102.37	102.38	2	9.4709E-11	89147	160511_QHF_FH_JSI12i_3	152.54	143.96			0.92306	0.94671	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92306	0.94671	NaN	1	0	Median	37029000	17339000	19690000	0	0	0	0	0	0	0	0	0	37029000	17339000	19690000	52339	1482	49291	315855	425057	425057			1	
TTTWNDPRVPSEGPK	1	Unmodified	1683.8216	0.82164829	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		36.597	36.164	3	0.044242	30811	160511_QHF_FH_JSI11i_2	33.624	22.519			1.7857	1.8138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7857	1.8138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19385000	3850600	15534000	0	0	0	0	0	0	19385000	3850600	15534000	0	0	0	52340	732	49292	315856	425058	425058			1	
TTVDAMK	1	Unmodified	764.37384	0.37383999	5169	Q9NZZ3	CHMP5	Charged multivesicular body protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	2					2				1	1	1	1	17.078	13.019	2	0.020341	11157	160511_QHF_FH_JSI9i_1	60.76	43.833			1.1396	1.2692	60.76	4	2	Median	0.51883	0.42311	NaN	1	1	Median	1.1419	1.3521	NaN	1	0	Median	1.655	1.6477	NaN	1	0	Median	1.1373	1.1915	NaN	1	1	Median	440060000	216940000	223120000	125620000	64577000	61039000	3096300	1652800	1443500	5314600	2450600	2864000	306030000	148260000	157770000	52341	5169	49293	315857;315858;315859;315860	425059;425060;425061	425061			3	
TTVEDFCMK	1	Unmodified	1129.4784	0.47838142	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	44.861	44.343	2	0.0037462	40053	160511_QHF_FH_JSI11i_1	58.981	55.725			1.6591	1.6299	28.419	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4166	1.3332	NaN	1	0	Median	1.9431	1.9926	NaN	1	0	Median	118940000	53797000	65142000	0	0	0	0	0	0	71635000	35527000	36109000	47303000	18270000	29033000	52342	5505	49294	315861;315862	425062	425062			1	
TTVEPTPGK	1	Unmodified	928.48656	0.48656157	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	3					3				1	1	2	2	16.241	12.347	2	9.9008E-05	10437	160511_QHF_FH_JSI9i_1	111.95	77.123			0.87564	0.87989	28.16	6	3	Median	0.6526	0.53187	NaN	1	1	Median	0.69226	0.82441	NaN	1	0	Median	0.9004	0.86614	11.438	2	1	Median	1.0504	1.1138	12.983	2	1	Median	731150000	450010000	281130000	276140000	190880000	85264000	1964600	1026600	938020	278380000	179860000	98521000	174660000	78248000	96411000	52343	4848	49295	315863;315864;315865;315866;315867;315868	425063;425064;425065;425066;425067	425066			5	
TTVEYLIK	1	Unmodified	965.54335	0.54334816	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	50.779	49.912	2	0.0016363	43026	160511_QHF_FH_JSI11i_2	86.833	53.475			0.97787	1.1239	10.843	5	1	Median	1.1145	0.94565	NaN	1	0	Median	0.97487	1.1653	2.8555	2	0	Median	0.91541	0.95031	NaN	1	0	Median	0.99244	1.1239	NaN	1	1	Median	246060000	132550000	113510000	34449000	16649000	17800000	82621000	42893000	39729000	76886000	42327000	34559000	52101000	30678000	21423000	52344	2348	49296	315869;315870;315871;315872;315873;315874	425068;425069;425070;425071;425072;425073	425071			6	
TTVIQDGIK	1	Unmodified	973.54441	0.5444108	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	30.671	30.294	2	0.024278	27063	160511_QHF_FH_JSI10i_1	41.427	24.916			0.84567	0.83621	11.68	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84125	0.97882	NaN	1	0	Median	0.84567	0.83134	NaN	1	0	Median	0.98257	1.0425	NaN	1	0	Median	125210000	66895000	58314000	0	0	0	41255000	22794000	18462000	44666000	23994000	20673000	39288000	20108000	19180000	52345	2305	49297	315875;315876;315877	425074;425075	425075			1	
TTVISAVGTIVK	1	Unmodified	1187.7125	0.71253876	5311	Q9UHR5	SAP30BP	SAP30-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.2	4.62			2				4	4		1	3	3	3	75.831	67.356	2	0.00017229	59987	160511_QHF_FH_JSI12i_3	82.261	76.226			1.3039	1.3046	27.009	10	1	Median	1.3056	1.1008	NaN	1	0	Median	0.76411	0.92497	47.906	3	1	Median	1.4219	1.4147	23.522	3	0	Median	1.4707	1.523	12.114	3	0	Plateau	95488000	40605000	54883000	9063000	4016100	5047000	16069000	8518500	7550200	43397000	17846000	25552000	26959000	10225000	16734000	52346	5311	49298	315878;315879;315880;315881;315882;315883;315884;315885;315886;315887	425076;425077;425078;425079;425080;425081;425082;425083;425084;425085;425086;425087;425088	425088			13	
TTVLDVMR	0	Unmodified	933.49535	0.49535211	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	56.534	55.771	2	0.0006475	47780	160511_QHF_FH_JSI12i_2	101.33	86.106			1.5511	1.6308	32.681	6	0	Median	2.6833	2.2702	NaN	1	0	Median	1.54	1.8027	44.217	2	0	Median	1.5511	1.5414	38.02	2	0	Median	1.1306	1.2694	NaN	1	0	Median	396930000	146440000	250490000	67117000	19867000	47250000	83992000	23881000	60111000	129660000	45477000	84187000	116160000	57219000	58941000	52347	1223	49299	315888;315889;315890;315891;315892;315893	425089;425090;425091;425092;425093	425090			5	
TTVQLSHPAAMELVLR	0	Unmodified	1764.9556	0.95563935	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		71.776	71.776	3	0.00035037	64022	160511_QHF_FH_JSI11i_3	56.959	28.378			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52348	4659	49300	315894	425094	425094			1	
TTVQQEPLESGAK	1	Unmodified	1386.6991	0.69907354	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	24.727	24.17	2	3.3049E-40	20821	160511_QHF_FH_JSI9i_1	172.8	122.76			0.86409	0.94536	8.806	4	2	Linear	0.99726	0.81908	NaN	1	1	Median	0.715	0.83233	NaN	1	0	Median	0.98638	0.96307	NaN	1	0	Median	0.75696	0.78728	NaN	1	1	Median	189300000	99174000	90124000	54449000	27756000	26693000	39658000	22303000	17355000	53955000	24536000	29419000	41235000	24579000	16656000	52349	1676	49301	315895;315896;315897;315898;315899	425095;425096;425097;425098;425099;425100;425101	425101			7	
TTVTELPQTSHVSFSEPDIPSSK	1	Unmodified	2486.2177	0.21766351	5131	Q9NYP3	DONSON	Protein downstream neighbor of Son	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.801	67.213	3	0.0068076	58733	160511_QHF_FH_JSI11i_2	34.405	22.617			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52350	5131	49302	315900	425102	425102			1	
TTVVYPATEK	1	Unmodified	1107.5812	0.58119023	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	31.502	27.897	2	2.4019E-05	24457	160511_QHF_FH_JSI11i_1	107.15	31.3			0.97529	1.0023	19.53	8	4	Median	1.2257	0.99982	NaN	1	0	Median	0.89685	1.0323	15.145	2	2	Median	0.79928	0.78616	19.111	3	2	Plateau	1.1053	1.1884	18.521	2	0	Median	633120000	324540000	308590000	136110000	52893000	83219000	122070000	68437000	53638000	263390000	148540000	114850000	111540000	54667000	56877000	52351	4003	49303	315901;315902;315903;315904;315905;315906;315907;315908	425103;425104;425105;425106;425107;425108;425109;425110;425111	425103			9	
TTVVYPATEKHLQK	2	Acetyl (K)	1655.8883	0.88827129	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.484							3	5		1	2	3	2	50.492	40.001	3	8.5137E-18	22503	160513_QHF_FH_JSI10Kac_4	145.6	127.86			0.8797	0.88257	19.513	7	0	Median	1.0987	0.88257	NaN	1	0	Median	0.84849	0.99995	32.346	2	0	Median	0.85224	0.83498	10.132	2	0	Median	0.73511	0.80739	24.619	2	0	Median	87564000	54755000	32809000	5784400	2473400	3311000	19096000	11147000	7949500	41798000	29591000	12208000	20885000	11544000	9341100	52352	4003	49304	315909;315910;315911;315912;315913;315914;315915;315916	425112;425113;425114;425115;425116;425117;425118;425119;425120;425121;425122;425123;425124;425125	425115	3028		14	
TTVYVVEDQR	0	Unmodified	1208.6037	0.60371659	4656	Q9H1C7	CYSTM1	Cysteine-rich and transmembrane domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.2	0.661					1	4	3				4	2	2	41.31	31.993	2	5.8028E-08	17719	160513_QHF_FH_JSI10Kac_3	119.68	95.459			0.79463	0.93039	16.035	7	2	Median	NaN	NaN	NaN	0	0	Median	0.85582	1.0104	14.575	4	2	Median	0.96159	0.94576	NaN	1	0	Median	0.6939	0.7591	4.1978	2	0	Median	79201000	41667000	37534000	0	0	0	45638000	23585000	22053000	6344900	3513100	2831800	27218000	14569000	12650000	52353	4656	49305	315917;315918;315919;315920;315921;315922;315923;315924	425126;425127;425128;425129;425130;425131;425132;425133;425134	425134			8	
TTVYVVEDQRR	0	Unmodified	1364.7048	0.70482762	4656	Q9H1C7	CYSTM1	Cysteine-rich and transmembrane domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	3	2	2	33.727	24.485	3	3.067E-15	13249	160513_QHF_FH_JSI10Kac_5	125.72	104.88			0.93448	1.0004	18.569	9	0	Median	1.3951	1.1843	10.68	2	0	Median	0.83479	1.0004	8.8072	3	0	Median	1.0323	1.0268	15.178	2	0	Median	0.68421	0.75323	2.2582	2	0	Median	270980000	147650000	123330000	57295000	23615000	33681000	73609000	39743000	33866000	64273000	37739000	26534000	75801000	46552000	29249000	52354	4656	49306	315925;315926;315927;315928;315929;315930;315931;315932;315933	425135;425136;425137;425138;425139;425140;425141;425142;425143;425144;425145;425146;425147;425148	425143			14	
TTWAIKHAASNPSK	2	Acetyl (K)	1552.7998	0.79979063	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.532	34.891	2	0.020844	19104	160513_QHF_FH_JSI11Kac_6	58.676	37.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4150400	4150400	0	0	0	0	0	0	0	4150400	4150400	0	0	0	0	52355	4442	49307	315934	425149	425149	3160		1	
TTWGDGGENSPCNVVSK	1	Unmodified	1806.7843	0.7842765	101	O00161	SNAP23	Synaptosomal-associated protein 23	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	42.502	41.983	2	2.0983E-16	38075	160511_QHF_FH_JSI12i_1	119.69	104.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52356	101	49308	315935;315936	425150;425151	425150			2	
TTWVTKHAAENPGK	2	Acetyl (K)	1580.7947	0.79470526	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	40.04	30.892	2;3	9.6336E-12	16952	160513_QHF_FH_JSI11Kac_6	129.01	105.53			0.36513	0.34783	88.051	6	0	Median	0.45701	0.39806	NaN	1	0	Median	1.362	1.6151	7.8913	2	0	Median	0.27036	0.26174	2.3018	2	0	Median	0.29172	0.30395	NaN	1	0	Median	386240000	293040000	93205000	9647800	5831300	3816400	75360000	41822000	33539000	262650000	213820000	48832000	38581000	31562000	7018300	52357	2161	49309	315937;315938;315939;315940;315941;315942;315943	425152;425153;425154;425155;425156;425157;425158;425159;425160;425161;425162;425163;425164	425153	2275;2280		13	
TTYDSSLSSYTVPLEK	1	Unmodified	1789.8622	0.8621757	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	67.696	67.184	2;3	2.4732E-65	59639	160511_QHF_FH_JSI9i_1	230.14	213.89			1.1186	1.0357	29.577	6	2	Median	1.2122	1.0128	NaN	1	0	Median	1.1228	1.3176	48.418	2	1	Median	1.3411	1.3116	35.101	2	1	Median	1.0297	1.0482	NaN	1	0	Median	837000000	405630000	431370000	208530000	82790000	125740000	201710000	119970000	81745000	241490000	116840000	124650000	185270000	86027000	99239000	52358	3801	49310	315944;315945;315946;315947;315948;315949	425165;425166;425167;425168;425169;425170;425171;425172;425173;425174;425175	425175			11	
TTYKYEMINK	2	Acetyl (K)	1331.6431	0.64313856	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		57.009	46.059	2	0.011732	26489	160513_QHF_FH_JSI11Kac_4	65.347	47.035			1.2855	1.2517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2855	1.2517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10688000	4545000	6143100	0	0	0	0	0	0	10688000	4545000	6143100	0	0	0	52359	5494	49311	315950	425176	425176	3455		1	
TTYLEDLPPPPEYELAPSK	1	Unmodified	2159.0674	0.067417448	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	85.293	84.836	2;3	2.692E-13	77052	160511_QHF_FH_JSI10i_1	137.59	125.61			1.18	1.347	22.214	4	4	Linear	1.1023	0.92411	NaN	1	1	Median	1.3591	1.4575	NaN	1	1	Median	1.2631	1.2261	NaN	1	1	Median	0.92297	0.93237	NaN	1	1	Median	43423000	19117000	24306000	7586300	3719200	3867100	9867100	2025600	7841500	16483000	7003700	9479800	9485900	6368700	3117200	52360	2314	49312	315951;315952;315953;315954;315955	425177;425178;425179;425180;425181	425180			5	
TTYLEFIQQNEER	0	Acetyl (Protein N-term)	1711.8053	0.80532952	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.505	95.205	2	6.3302E-08	84482	160511_QHF_FH_JSI9i_1	84.658	68.026			0.74929	0.67617	0.7324	2	0	Median	0.80798	0.67267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69486	0.67968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63863000	36643000	27220000	22838000	14428000	8410600	0	0	0	41025000	22216000	18809000	0	0	0	52361	2674	49313	315956;315957;315958;315959	425182;425183;425184;425185	425185			4	
TTYLEFIQQNEERDGVR	0	Acetyl (Protein N-term)	2139.0233	0.023261223	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	90.134	89.68	2	5.1228E-05	78798	160511_QHF_FH_JSI9i_2	86.313	54.673			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52362	2674	49314	315960;315961;315962;315963;315964;315965;315966	425186;425187;425188;425189;425190;425191;425192;425193;425194;425195	425192			10	
TTYLVLDEADR	0	Unmodified	1294.6405	0.64049603	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	6.11	4	4				1	3	1		2	5	2	4	58.885	55.497	2	4.263E-18	50445	160511_QHF_FH_JSI12i_1	161.63	142.36			0.91448	0.97443	19.32	11	1	Median	1.4396	1.1972	24.21	2	0	Median	0.78779	0.95592	21.175	5	1	Median	0.99196	0.97372	0.10298	2	0	Median	0.91625	0.98692	5.5538	2	0	Median	2691100000	1377400000	1313700000	576240000	241030000	335210000	769190000	448840000	320350000	722990000	355020000	367970000	622710000	332560000	290150000	52363	1128	49315	315967;315968;315969;315970;315971;315972;315973;315974;315975;315976;315977;315978;315979	425196;425197;425198;425199;425200;425201;425202;425203;425204;425205;425206;425207;425208;425209;425210;425211	425200			14	
TTYMAYHYFR	0	Unmodified	1351.6019	0.60194245	3616	Q8NCE0	TSEN2	tRNA-splicing endonuclease subunit Sen2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	1	2	2	1	53.96	44.769	2;3	3.1993E-07	24576	160513_QHF_FH_JSI10Kac_6	124.81	122.93			0.95991	1.0552	7.5432	5	0	Median	1.3463	1.1544	NaN	1	0	Median	0.84821	1.0043	6.9948	2	0	Median	1.137	1.1039	NaN	1	0	Median	0.95991	0.99965	NaN	1	0	Median	268070000	129100000	138970000	53872000	23816000	30056000	147170000	73711000	73463000	31130000	14089000	17041000	35891000	17487000	18404000	52364	3616	49316	315980;315981;315982;315983;315984;315985	425212;425213;425214;425215;425216;425217	425214			6	
TTYMAYHYFR	0	Oxidation (M)	1367.5969	0.59685707	3616	Q8NCE0	TSEN2	tRNA-splicing endonuclease subunit Sen2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	44.735	35.619	3	0.0080037	19054	160513_QHF_FH_JSI9Kac_6	39.918	32.548			1.3486	1.1693	33.735	3	2	Median	1.3486	1.1693	NaN	1	0	Median	1.7871	2.0891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0758	1.1601	NaN	1	1	Median	29773000	11890000	17883000	10445000	4031500	6413300	11750000	3924000	7825800	0	0	0	7578000	3934300	3643700	52365	3616	49316	315986;315987;315988	425218;425219;425220	425218		2273	3	
TTYMDPTGK	1	Oxidation (M)	1028.4485	0.4484615	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	7.86	5.94	3					4					2	2	3	21.893	17.624	2	0.0012636	21257	160511_QHF_FH_JSI12i_1	73.157	54.717			0.79129	0.93114	23.249	7	0	Median	NaN	NaN	NaN	0	0	Median	0.81696	0.96926	5.6741	2	0	Median	0.95119	0.95768	24.458	2	0	Median	0.53221	0.55004	29.043	3	0	Plateau	411340000	225470000	185870000	0	0	0	131440000	72637000	58807000	136340000	65174000	71164000	143560000	87664000	55894000	52366	5370	49317	315989;315990;315991;315992;315993;315994;315995	425221;425222;425223;425224;425225;425226;425227;425228	425223		2645	8	
TTYMDPTGK	1	Unmodified	1012.4535	0.45354688	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	27.735	23.766	2	3.5449E-06	20924	160511_QHF_FH_JSI11i_1	122.52	107.14			0.9999	1.0503	9.8717	7	0	Median	1.425	1.1593	NaN	1	0	Median	0.87495	1.0361	1.9247	2	0	Median	0.96904	0.93938	4.3081	2	0	Median	1.0919	1.1468	7.6403	2	0	Median	2584600000	1366800000	1217800000	625390000	265350000	360040000	720090000	403850000	316240000	676450000	404430000	272020000	562640000	293180000	269460000	52367	5370	49317	315996;315997;315998;315999;316000;316001;316002	425229;425230;425231;425232;425233;425234;425235;425236;425237	425230			9	
TTYPIDETMIHNGPPHNSNFGYSYAK	1	Unmodified	2953.3341	0.33410703	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	3	4	64.416	63.755	3;4	9.1163E-83	56493	160511_QHF_FH_JSI11i_3	235.69	229.78			0.97847	1.032	6.8555	11	0	Median	1.2507	1.058	3.5153	2	0	Median	0.91411	1.1348	4.7216	2	0	Median	1.0534	0.99476	6.8088	3	0	Median	0.92596	0.99888	5.7665	4	0	Median	1436200000	742100000	694070000	188680000	82455000	106220000	204910000	102640000	102270000	358180000	209990000	148190000	684400000	347010000	337390000	52368	2460	49318	316003;316004;316005;316006;316007;316008;316009;316010;316011;316012;316013	425238;425239;425240;425241;425242;425243;425244;425245;425246;425247;425248;425249;425250;425251;425252;425253;425254;425255;425256;425257;425258;425259;425260;425261;425262;425263;425264;425265;425266	425238			28	
TTYQALPCLPSMYGYPNR	0	Unmodified	2130.9867	0.98668148	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4									2	3	1	83.325	82.597	2	1.1258E-07	72661	160511_QHF_FH_JSI11i_2	100.19	88.747			1.2246	1.2845	10.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2298	1.1966	NaN	1	1	Median	1.2195	1.3789	NaN	1	1	Median	25612000	8592000	17020000	0	0	0	0	0	0	14650000	5375900	9274400	10962000	3216000	7745600	52369	1805	49319	316014;316015;316016;316017;316018;316019	425267;425268;425269;425270;425271;425272	425271			6	
TTYSDKGAKPER	2	Acetyl (K);Acetyl (Protein N-term)	1435.6943	0.69432251	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	1	0	2		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	27.544	19.901	2	7.4725E-13	11608	160513_QHF_FH_JSI10Kac_3	63.624	44.844			0.41939	0.42236	65.71	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2282	1.4587	NaN	1	0	Median	0.39953	0.39242	NaN	1	0	Median	0.64963	0.72041	NaN	1	0	Median	40517000	24375000	16141000	0	0	0	7825100	3474000	4351100	18693000	12848000	5844600	13999000	8053100	5945800	52370	1395	49320	316020;316021;316022	425273;425274;425275;425276;425277;425278	425278	1354		6	
TTYTTAYTFPGILK	1	Unmodified	1575.8185	0.81846039	4765	Q9H7D0	DOCK5	Dedicator of cytokinesis protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		80.519	79.813	2	8.822E-05	71030	160511_QHF_FH_JSI10i_2	114.86	97.92			0.48975	0.60009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48975	0.60009	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31575000	18918000	12657000	0	0	0	31575000	18918000	12657000	0	0	0	0	0	0	52371	4765	49321	316023;316024	425279;425280	425280			2	
TVAALALLFAIHSYK	1	Unmodified	1616.929	0.92901389	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									11	3	2	3	3	94.025	85.412	2;3	3.5658E-44	45974	160513_QHF_FH_JSI12Kac_6	183.41	172.77			0.63825	0.64751	39.365	11	3	Median	0.59058	0.50469	8.726	3	1	Median	0.63395	0.75403	21.537	2	0	Median	1.0317	0.96846	46.683	3	2	Median	0.85574	0.93739	35.755	3	0	Median	3789400000	1922600000	1866800000	769320000	471620000	297700000	1006700000	480240000	526430000	1337400000	600560000	736890000	675950000	370190000	305760000	52372	2560	49322	316025;316026;316027;316028;316029;316030;316031;316032;316033;316034;316035	425281;425282;425283;425284;425285;425286;425287;425288;425289;425290;425291;425292;425293;425294;425295;425296	425290			15	
TVAATNMNEESSR	0	Unmodified	1408.6253	0.62525667	4659	Q9H1H9;Q9NQT8	KIF13A;KIF13B	Kinesin-like protein KIF13A;Kinesin-like protein KIF13B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		15.841	15.364	2	6.9913E-05	12723	160511_QHF_FH_JSI9i_1	138.25	110.51			1.2745	1.0142	22.637	3	3	Plateau	0.93174	0.76155	NaN	1	1	Median	0.87117	1.0142	NaN	1	1	Median	1.2745	1.1906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	152950000	70453000	82500000	52827000	27007000	25821000	50210000	25515000	24695000	49916000	17931000	31985000	0	0	0	52373	4659	49323	316036;316037;316038	425297;425298;425299	425299			3	
TVAATNMNETSSR	0	Unmodified	1380.6303	0.63034205	411;390	O60333;Q12756;O43896	KIF1B;KIF1A;KIF1C	Kinesin-like protein KIF1B;Kinesin-like protein KIF1A;Kinesin-like protein KIF1C	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	15.548	15.204	2	6.0654E-07	12693	160511_QHF_FH_JSI10i_1	92.866	63.099			1.4089	1.5495	32.719	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6508	1.9529	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2025	1.2295	NaN	1	0	Median	125440000	59135000	66303000	0	0	0	55869000	23149000	32720000	0	0	0	69570000	35987000	33584000	52374	411;390	49324	316039;316040;316041	425300;425301;425302;425303	425302			3	
TVAEGHGDTLYVGTTR	0	Unmodified	1675.8166	0.81656291	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.25	0.433		6	2							1		4	3	30.315	29.753	2;3	5.4611E-09	25751	160511_QHF_FH_JSI9i_2	126.63	112.2			0.86648	0.9171	16.501	7	5	Median	1.1649	0.9926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85914	0.88977	14.78	4	4	Median	1.0248	1.0544	19.727	2	0	Median	910150000	444090000	466060000	157140000	61986000	95155000	0	0	0	586430000	310720000	275710000	166590000	71388000	95198000	52375	737	49325	316042;316043;316044;316045;316046;316047;316048;316049	425304;425305;425306;425307;425308;425309;425310;425311;425312;425313	425306			10	
TVAEVDSESLPSSSK	1	Unmodified	1534.7362	0.7362469	1311	P28715	ERCC5	DNA repair protein complementing XP-G cells	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	37.06	36.45	2	8.6395E-10	32883	160511_QHF_FH_JSI11i_1	147.24	120.65			1.4447	1.4497	34.659	5	3	Median	2.3353	1.9902	NaN	1	1	Median	0.97503	1.1351	NaN	1	0	Median	0.94178	0.90266	NaN	1	0	Median	1.6706	1.6945	22.069	2	2	Median	161340000	57452000	103890000	31568000	7569500	23998000	39578000	17169000	22409000	31014000	12631000	18383000	59181000	20082000	39099000	52376	1311	49326	316050;316051;316052;316053;316054	425314;425315;425316;425317;425318;425319	425314			6	
TVAEVQETLAEMIR	0	Unmodified	1588.8131	0.81305744	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	89.689	89.054	2	4.438E-07	79059	160511_QHF_FH_JSI10i_2	138.94	113.28			0.88237	1.3776	38.86	6	4	Linear	1.0483	0.88873	NaN	1	0	Median	0.92826	1.1448	NaN	1	0	Median	1.3215	1.3356	30.563	2	2	Median	1.9265	2.1015	28.441	2	2	Median	308170000	129200000	178970000	39440000	15719000	23721000	46461000	23009000	23452000	110390000	61107000	49279000	111880000	29367000	82513000	52377	3736	49327	316055;316056;316057;316058;316059;316060;316061	425320;425321;425322;425323;425324;425325;425326	425326			7	
TVAGGAWTYNTTSAVTVK	1	Unmodified	1825.921	0.92102798	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	6.08	8	13	6					1	8	11	9	8	8	61.66	58.728	2;3	9.2671E-298	51946	160511_QHF_FH_JSI10i_2	351.69	325.57			0.89936	0.94167	16.175	31	11	Median	1.1009	0.88911	19.064	7	2	Median	0.80509	0.94732	12.551	8	4	Median	0.92826	0.91029	21.255	8	3	Median	0.87643	0.91348	12.399	8	2	Median	10224000000	5095100000	5128700000	1562400000	730260000	832130000	2453300000	1343700000	1109600000	2708800000	1326800000	1381900000	3499400000	1694400000	1805100000	52378	1956	49328	316062;316063;316064;316065;316066;316067;316068;316069;316070;316071;316072;316073;316074;316075;316076;316077;316078;316079;316080;316081;316082;316083;316084;316085;316086;316087;316088;316089;316090;316091;316092;316093;316094;316095;316096;316097	425327;425328;425329;425330;425331;425332;425333;425334;425335;425336;425337;425338;425339;425340;425341;425342;425343;425344;425345;425346;425347;425348;425349;425350;425351;425352;425353;425354;425355;425356;425357;425358;425359;425360;425361;425362;425363;425364;425365;425366;425367;425368;425369;425370;425371;425372;425373;425374;425375;425376;425377;425378;425379;425380;425381;425382;425383;425384;425385;425386;425387;425388;425389;425390;425391;425392;425393;425394;425395;425396;425397	425379			71	
TVAGIPNFILK	1	Unmodified	1171.6965	0.69649476	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	85.434	84.769	2	0.00058265	75549	160511_QHF_FH_JSI11i_3	69.954	49.624			0.98565	0.93375	18.087	8	2	Median	1.0328	0.87566	10.882	2	1	Median	0.85584	1.0197	24.056	2	1	Median	0.90563	0.88054	6.5	2	0	Median	1.1113	1.2162	10.504	2	0	Median	284260000	151920000	132350000	47680000	26340000	21340000	58728000	31585000	27143000	95761000	53624000	42136000	82094000	40368000	41727000	52379	2993	49329	316098;316099;316100;316101;316102;316103;316104;316105	425398;425399;425400;425401;425402;425403;425404;425405	425399			8	
TVAGQDAVIVLLGTR	0	Unmodified	1511.8671	0.86714192	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.31	6.57	6	8	8					7	7	7	9	9	11	86.588	82.999	2;3	8.2754E-66	76418	160511_QHF_FH_JSI11i_2	236.28	187.85			0.98855	1.0319	19.498	32	5	Median	1.4085	1.1505	10.11	7	2	Median	0.83517	1.0251	27.495	8	0	Median	0.98522	0.95477	8.2933	9	2	Median	0.97768	1.0555	19.613	8	1	Median	2476400000	1220900000	1255600000	647140000	271710000	375430000	665150000	363470000	301670000	741500000	371300000	370200000	422640000	214380000	208260000	52380	1334	49330	316106;316107;316108;316109;316110;316111;316112;316113;316114;316115;316116;316117;316118;316119;316120;316121;316122;316123;316124;316125;316126;316127;316128;316129;316130;316131;316132;316133;316134;316135;316136;316137;316138;316139;316140;316141	425406;425407;425408;425409;425410;425411;425412;425413;425414;425415;425416;425417;425418;425419;425420;425421;425422;425423;425424;425425;425426;425427;425428;425429;425430;425431;425432;425433;425434;425435;425436;425437;425438;425439;425440;425441;425442;425443;425444;425445;425446;425447;425448;425449;425450;425451;425452;425453;425454;425455;425456;425457;425458;425459;425460;425461;425462;425463;425464;425465	425437			58	
TVAGQDAVIVLLGTRNDLSPTTVMSEGAR	0	Unmodified	2970.5444	0.54443416	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			100.87	100.7	3	1.0336E-14	83341	160511_QHF_FH_JSI10i_3	92.632	84.125			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27505000	0	27505000	0	0	0	27505000	0	27505000	0	0	0	0	0	0	52381	1334	49331	316142	425466	425466			1	
TVAHAGMVGFPNAGK	1	Unmodified	1455.7293	0.72926823	4723	Q9H4K7	MTG2	Mitochondrial ribosome-associated GTPase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.059	38.879	3	0.020701	33183	160511_QHF_FH_JSI12i_3	36.993	24.633			1.2626	1.2738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2626	1.2738	NaN	1	1	Median	56946000	22801000	34145000	0	0	0	0	0	0	0	0	0	56946000	22801000	34145000	52382	4723	49332	316143	425467	425467			1	
TVAIYSEQDTGQMHR	0	Unmodified	1734.7995	0.79953264	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.53		9	3					4		4	4	6	2	34.97	32	2;3	5.6762E-66	27975	160511_QHF_FH_JSI11i_3	229.97	222.77			1.1125	1.1089	30.797	16	3	Median	1.3496	1.1377	19.444	4	2	Median	0.90683	1.0759	37.539	4	0	Median	1.1839	1.1381	32.959	6	1	Median	0.85189	0.88721	34.432	2	0	Median	1137700000	545950000	591710000	268820000	105230000	163590000	257150000	145580000	111570000	442580000	221420000	221160000	169110000	73715000	95394000	52383	1002	49333	316144;316145;316146;316147;316148;316149;316150;316151;316152;316153;316154;316155;316156;316157;316158;316159	425468;425469;425470;425471;425472;425473;425474;425475;425476;425477;425478;425479;425480;425481;425482;425483;425484;425485;425486;425487	425468			20	
TVAIYSEQDTGQMHR	0	Oxidation (M)	1750.7944	0.79444726	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	1	0				By MS/MS	2.5	0.5		1	1										2	24.699	24.057	3	0.009446	19746	160511_QHF_FH_JSI12i_3	39.776	37.301			1.163	1.2367	2.8093	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.163	1.2367	2.8093	2	0	Median	56209000	29502000	26707000	0	0	0	0	0	0	0	0	0	56209000	29502000	26707000	52384	1002	49333	316160;316161	425488	425488		583	1	
TVALDGTLFQK	1	Unmodified	1191.6499	0.6499385	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	66.322	65.7	2	0.0034222	59908	160511_QHF_FH_JSI12i_1	68.626	49.532			0.89603	0.93694	23.948	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89603	0.93694	23.948	2	2	Median	72194000	38434000	33760000	0	0	0	0	0	0	0	0	0	72194000	38434000	33760000	52385	2560	49334	316162;316163;316164	425489;425490;425491	425491			3	
TVALWDLR	0	Unmodified	972.53927	0.53926584	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.64	2	4	4					4	4	4	5	5	4	72.723	68.091	2	1.2309E-21	59399	160511_QHF_FH_JSI12i_2	188.81	108.35			1.0155	1.0357	10.243	18	0	Median	1.1967	0.98688	3.9631	4	0	Median	0.872	1.0423	8.8096	5	0	Median	1.026	1.0096	11.36	5	0	Median	0.96887	1.0832	14.672	4	0	Median	9885900000	4903700000	4982100000	1249000000	606940000	642060000	2505900000	1244900000	1261000000	3444300000	1723400000	1720900000	2686700000	1328500000	1358200000	52386	2283;2741	49335	316165;316166;316167;316168;316169;316170;316171;316172;316173;316174;316175;316176;316177;316178;316179;316180;316181;316182	425492;425493;425494;425495;425496;425497;425498;425499;425500;425501;425502;425503;425504;425505;425506;425507;425508;425509;425510;425511;425512;425513;425514;425515;425516;425517;425518;425519;425520;425521;425522;425523;425524;425525;425526;425527;425528;425529;425530;425531;425532;425533;425534;425535	425496			44	
TVAMHEVFLCR	0	Unmodified	1361.6584	0.65841147	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	48.055	47.935	3	4.5809E-05	42384	160511_QHF_FH_JSI11i_3	78.692	68.366			0.75527	0.72628	25.79	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66028	0.60521	NaN	1	1	Median	0.86392	0.87157	NaN	1	1	Median	153660000	77322000	76343000	0	0	0	0	0	0	69710000	39225000	30485000	83955000	38098000	45858000	52387	5437	49336	316183;316184	425536;425537	425536			2	
TVANLLSGKSPR	1	Acetyl (K)	1283.7197	0.7197494	2409	Q13428	TCOF1	Treacle protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.956						2	5	6	4	2	5	5	5	60.285	50.102	2;3	3.805E-39	27009	160513_QHF_FH_JSI11Kac_6	191.33	157.97			1.0124	0.99816	112.92	14	2	Median	1.1605	0.9858	5.5861	2	0	Median	0.81101	0.96166	9.7361	4	0	Median	1.1652	1.145	134.26	4	1	Median	0.98625	1.0577	170.09	4	1	Median	467810000	235690000	232130000	72504000	34308000	38196000	193380000	108050000	85336000	133600000	66077000	67521000	68330000	27255000	41075000	52388	2409	49337	316185;316186;316187;316188;316189;316190;316191;316192;316193;316194;316195;316196;316197;316198;316199;316200;316201	425538;425539;425540;425541;425542;425543;425544;425545;425546;425547;425548;425549;425550;425551;425552;425553;425554;425555;425556;425557;425558;425559;425560;425561;425562;425563	425541	2476		26	
TVANMIK	1	Unmodified	775.42621	0.42620992	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.25	0.433	3	1								1	1	2		23.001	22.617	2	0.024235	19641	160511_QHF_FH_JSI11i_1	58.167	18.949			3.4672	3.4065	91.892	3	2	Plateau	5.2382	4.5476	NaN	1	1	Median	1.4123	1.6465	NaN	1	0	Median	0.74218	0.72637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	680480000	166660000	513820000	282160000	89231000	192930000	136660000	36614000	100040000	261660000	40809000	220850000	0	0	0	52389	2057	49338	316202;316203;316204;316205	425564;425565;425566;425567	425565			4	
TVANMIK	1	Oxidation (M)	791.42112	0.42112454	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	1	0	By MS/MS			By matching	2	0		2								1			1	23.827	22.708	2	0.041443	19417	160511_QHF_FH_JSI9i_2	53.554	29.368			1.2595	1.239	28.761	2	0	Median	1.1716	1.011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3541	1.5185	NaN	1	0	Median	166440000	75388000	91049000	79492000	37688000	41804000	0	0	0	0	0	0	86945000	37700000	49245000	52390	2057	49338	316206;316207	425568	425568			1	
TVAPMPPAQDHK	1	Unmodified	1290.6391	0.63905624	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.11	3.87	4	12					2			5	4	7	2	21.626	20.309	2;3	1.4768E-05	16603	160511_QHF_FH_JSI12i_2	74.237	65.508			0.97802	0.97054	65.582	12	6	Median	0.98452	0.83495	72.868	3	2	Median	0.64234	0.77392	46.006	2	1	Median	0.99375	0.98448	91.049	5	3	Median	0.94489	1.0316	10.649	2	0	Median	1300500000	674900000	625630000	348930000	156040000	192890000	169210000	105540000	63665000	557830000	291410000	266420000	224560000	121910000	102660000	52391	1205	49339	316208;316209;316210;316211;316212;316213;316214;316215;316216;316217;316218;316219;316220;316221;316222;316223;316224;316225	425569;425570;425571;425572;425573;425574;425575;425576;425577;425578;425579;425580;425581;425582;425583;425584;425585;425586	425570			18	
TVAPMPPAQDHKR	1	Acetyl (K);Oxidation (M)	1504.7456	0.74564657	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	1	0	1	1			By MS/MS		15	0								2				2		26.591	17.126	3	0.0284	11221	160513_QHF_FH_JSI11Kac_5	41.644	31.159			0.2854	0.27581	21.893	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2854	0.27581	21.893	2	1	Median	NaN	NaN	NaN	0	0	Median	7555900	6108100	1447800	0	0	0	0	0	0	7555900	6108100	1447800	0	0	0	52392	1205	49340	316226;316227	425587;425588	425588	1073		2	
TVAPMPPAQDHKR	1	Acetyl (K)	1488.7507	0.75073195	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		34.186	24.425	3	1.8004E-05	14489	160513_QHF_FH_JSI11Kac_5	104.17	92.309			0.11322	0.11322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11322	0.11322	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8531400	8089300	442170	0	0	0	0	0	0	8531400	8089300	442170	0	0	0	52393	1205	49340	316228	425589	425589	1073		1	
TVAQLWNK	1	Unmodified	958.52362	0.52361577	4899	Q9NPF4	OSGEP	Probable tRNA N6-adenosine threonylcarbamoyltransferase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			81.216	80.527	2	0.021649	71743	160511_QHF_FH_JSI10i_2	44.692	23.392			1.0424	1.2753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0424	1.2753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21244000	8114000	13130000	0	0	0	21244000	8114000	13130000	0	0	0	0	0	0	52394	4899	49341	316229	425590	425590			1	
TVAQSQQLETNSQR	0	Unmodified	1588.7805	0.78051176	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	6					3				1	3	2	3	18.954	15.932	2;3	6.85E-05	13707	160511_QHF_FH_JSI12i_1	60.694	45.307			0.83337	0.92637	17.375	8	1	Median	1.3492	1.1135	NaN	1	0	Median	0.79398	0.9237	9.0681	3	0	Median	1.099	1.0712	4.9587	2	0	Median	0.73504	0.77356	20.823	2	1	Median	552150000	301070000	251080000	112670000	52191000	60481000	194990000	120540000	74458000	137360000	73358000	64003000	107120000	54983000	52138000	52395	1506	49342	316230;316231;316232;316233;316234;316235;316236;316237;316238	425591;425592;425593;425594;425595;425596;425597;425598	425591			6	
TVASIKNDPPSR	1	Acetyl (K)	1325.6939	0.69392858	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				3	1	2	37.02	27.998	2	0.00057091	15752	160513_QHF_FH_JSI10Kac_3	86.898	69.462			1.1853	1.165	55.1	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2614	1.4733	67.622	3	1	Median	1.1853	1.165	NaN	1	0	Median	0.7984	0.87693	NaN	1	0	Median	16394000	6784200	9609700	0	0	0	6494800	2333000	4161800	6961800	2844800	4117000	2937300	1606400	1330900	52396	95	49343	316239;316240;316241;316242;316243;316244	425599;425600;425601;425602;425603;425604;425605	425604	61		7	
TVASQPISTQTLVEGENDEQSSTDQASAIK	1	Unmodified	3133.4899	0.48987521	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.215	62.581	3;4	9.2749E-51	56609	160511_QHF_FH_JSI10i_1	174.77	168.47			1.0474	1.0769	23.355	4	0	Median	1.2955	1.073	NaN	1	0	Median	0.94725	1.0819	NaN	1	0	Median	1.158	1.0808	NaN	1	0	Median	0.65856	0.67609	NaN	1	0	Median	299200000	165710000	133490000	76351000	37784000	38568000	118790000	65551000	53234000	69873000	38457000	31416000	34194000	23920000	10273000	52397	2947	49344	316245;316246;316247;316248	425606;425607;425608;425609;425610;425611;425612	425610			7	
TVASRYDEYVNVK	1	Unmodified	1542.7678	0.7678218	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	38.4	37.849	3	0.016737	32273	160511_QHF_FH_JSI12i_3	38.799	33.315			1.1902	1.0855	16.695	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2667	1.4635	NaN	1	0	Median	1.1902	1.0855	NaN	1	0	Median	1.0393	1.1078	NaN	1	0	Median	160300000	75822000	84481000	0	0	0	41772000	23588000	18185000	71096000	26371000	44725000	47435000	25864000	21571000	52398	3766	49345	316249;316250;316251	425613;425614	425614			2	
TVASTAMNSQSSR	0	Oxidation (M)	1354.6147	0.61469198	662	O95239	KIF4A	Chromosome-associated kinesin KIF4A	no	no	0	0	1	0			By MS/MS		13	0						1						1		7.218	-0.099158	2	0.056597	2773	160513_QHF_FH_JSI11Kac_3	44.309	25.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52399	662	49346	316252	425615	425615			1	
TVATFILQK	1	Unmodified	1019.6015	0.60153174	3854	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	3	3	3	2	61.198	57.735	2	1.6521E-05	49463	160511_QHF_FH_JSI12i_3	125.31	54.79			0.93018	0.96564	20.195	9	2	Median	1.2793	1.0617	2.96	2	0	Median	0.71423	0.86311	17.023	3	1	Median	1.0633	1.0023	31.027	3	1	Median	0.93018	0.95275	NaN	1	0	Median	801590000	372410000	429180000	86350000	30917000	55434000	152270000	78157000	74111000	275040000	133040000	142000000	287940000	130300000	157630000	52400	3854	49347	316253;316254;316255;316256;316257;316258;316259;316260;316261;316262;316263	425616;425617;425618;425619;425620;425621;425622;425623;425624;425625;425626	425624			11	
TVATLSILGTR	0	Unmodified	1130.6659	0.66592292	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		74.565	63.868	2	0.025969	34045	160513_QHF_FH_JSI11Kac_5	53.751	29.596			1.1434	1.1164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1434	1.1164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2887800	1220100	1667700	0	0	0	0	0	0	2887800	1220100	1667700	0	0	0	52401	4704	49348	316264	425627	425627			1	
TVATPLNQVANPNSAIFGGAR	0	Unmodified	2097.0967	0.096700937	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.668	3	6	2							2	5	2	2	78.555	77.916	2;3	9.6931E-102	68776	160511_QHF_FH_JSI9i_2	256.35	235.92			0.89223	0.87591	32.361	11	3	Median	1.0097	0.86475	12.084	2	0	Median	0.7559	0.85413	48.959	5	3	Median	0.95444	0.92951	8.3986	2	0	Median	0.86177	0.91546	10.228	2	0	Median	423100000	243680000	179420000	109650000	55216000	54430000	170030000	109180000	60852000	71128000	39218000	31911000	72294000	40066000	32228000	52402	2619	49349	316265;316266;316267;316268;316269;316270;316271;316272;316273;316274;316275	425628;425629;425630;425631;425632;425633;425634;425635;425636;425637;425638;425639;425640;425641;425642;425643;425644;425645;425646;425647	425639			19	
TVATPLNQVANPNSAIFGGARPR	0	Unmodified	2350.2506	0.25057582	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							2	2	1		71.603	70.565	3	8.3932E-08	57944	160511_QHF_FH_JSI9i_3	74.364	71.027			0.9207	0.85028	7.2085	5	1	Median	0.99187	0.83295	2.9108	2	0	Median	0.72559	0.85235	2.9603	2	1	Median	0.9207	0.98111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	213030000	121220000	91815000	57345000	29491000	27855000	117170000	68541000	48625000	38522000	23186000	15335000	0	0	0	52403	2619	49350	316276;316277;316278;316279;316280	425648;425649;425650;425651;425652;425653;425654;425655	425650			8	
TVAVIGGISR	0	Unmodified	971.57638	0.57637963	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	13.9	3.9			1				1	4	3	2	4	2	1	51.558	42.456	2	0.0010774	23517	160513_QHF_FH_JSI11Kac_5	84.213	49.405			0.77735	0.89547	23.141	9	0	Median	0.95581	0.82638	22.912	2	0	Median	0.72777	0.84824	24.258	4	0	Median	1.1242	1.0902	18.521	2	0	Median	0.74342	0.82987	NaN	1	0	Median	158510000	86461000	72053000	21958000	10005000	11953000	88044000	52459000	35585000	43474000	21328000	22146000	5037700	2669100	2368600	52404	4449	49351	316281;316282;316283;316284;316285;316286;316287;316288;316289	425656;425657;425658;425659;425660;425661;425662;425663;425664;425665;425666	425662			11	
TVAVITSDGR	0	Unmodified	1017.5455	0.54547343	725	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	5.96	4	2	1			2	3			3	3	3	3	30.651	25.758	2	0.00019826	22897	160511_QHF_FH_JSI10i_1	81.95	64.854			0.94196	0.90562	59.303	10	5	Median	1.1879	1.0117	24.431	2	2	Median	0.74844	0.87886	28.779	3	1	Median	0.87953	0.87035	101.85	3	1	Median	1.071	1.1556	7.182	2	1	Median	1685100000	858980000	826110000	418700000	220060000	198640000	420580000	237040000	183540000	477980000	222150000	255820000	367830000	179720000	188110000	52405	725	49352	316290;316291;316292;316293;316294;316295;316296;316297;316298;316299;316300;316301	425667;425668;425669;425670;425671;425672;425673;425674;425675;425676;425677;425678;425679;425680;425681	425675			15	
TVAVWDSETGER	0	Unmodified	1348.6259	0.62590859	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								3	1	2	2	41.526	40.691	2	1.7874E-06	34911	160511_QHF_FH_JSI11i_2	126.03	111.36			1.3169	1.3265	27.773	8	5	Median	2.5119	2.1367	43.226	3	3	Plateau	1.0861	1.2958	NaN	1	1	Median	1.3169	1.3203	3.9713	2	1	Median	1.4202	1.5064	37.31	2	0	Median	1066500000	445660000	620870000	289300000	93957000	195350000	187280000	84910000	102370000	321870000	152020000	169850000	268080000	114780000	153300000	52406	4029	49353	316302;316303;316304;316305;316306;316307;316308;316309	425682;425683;425684;425685;425686;425687;425688;425689;425690;425691;425692;425693	425690			11	
TVAYFYDPDVGNFHYGAGHPMK	1	Unmodified	2485.1161	0.11611575	284	O15379	HDAC3	Histone deacetylase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	69.232	69.082	4	9.6932E-07	59827	160511_QHF_FH_JSI12i_3	70.99	61.011			1.0376	1.0147	10.731	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1505	1.0947	NaN	1	0	Median	0.93582	0.94056	NaN	1	0	Median	144430000	60145000	84289000	0	0	0	0	0	0	56305000	24481000	31824000	88128000	35663000	52465000	52407	284	49354	316310;316311	425694;425695;425696	425696			2	
TVAYTEQK	1	Unmodified	938.47091	0.4709115	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.37	5.81	4	3	3		1	3	5			3	8	4	4	14.322	9.8476	2	4.6632E-05	9241	160511_QHF_FH_JSI12i_1	136.16	80.144			1.0793	1.0337	42.477	17	9	Median	1.106	0.92379	15.578	2	0	Median	0.80976	0.98424	41.387	8	6	Median	1.0841	1.0635	63.475	4	2	Median	1.456	1.5242	36.184	3	1	Plateau	16117000000	7999500000	8117500000	3575500000	1785600000	1789900000	4550200000	2351600000	2198700000	3469400000	1775200000	1694200000	4521900000	2087200000	2434700000	52408	1344	49355	316312;316313;316314;316315;316316;316317;316318;316319;316320;316321;316322;316323;316324;316325;316326;316327;316328;316329;316330	425697;425698;425699;425700;425701;425702;425703;425704;425705;425706;425707;425708;425709;425710;425711;425712;425713;425714;425715;425716;425717;425718;425719;425720;425721;425722;425723	425703			27	
TVAYTEQKMTSGK	2	Acetyl (K);Oxidation (M)	1500.713	0.71300904	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	1	1			By MS/MS		13	0						1						1		29.326	20.797	2	0.047109	12899	160513_QHF_FH_JSI11Kac_3	49.35	25.975			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52409	1344	49356	316331	425724	425724	1271		1	
TVAYTEQKMTSGK	2	Acetyl (K)	1484.7181	0.71809442	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		42.666	32.529	2	0.0042275	19640	160513_QHF_FH_JSI11Kac_4	73.067	53.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	617900	617900	0	0	0	0	0	0	0	617900	617900	0	0	0	0	52410	1344	49356	316332	425725	425725	1271		1	
TVCDAAEK	1	Unmodified	892.39603	0.396032	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	7.3217	6.986	2	0.0014229	4836	160511_QHF_FH_JSI10i_1	89.698	26.981			1.1452	1.2478	7.8177	4	0	Median	1.5887	1.3157	NaN	1	0	Median	1.1239	1.2944	NaN	1	0	Median	1.144	1.1091	NaN	1	0	Median	1.1464	1.2028	NaN	1	0	Median	1153900000	580580000	573330000	198850000	92407000	106440000	316360000	163180000	153180000	337000000	188310000	148690000	301690000	136670000	165020000	52411	434	49357	316333;316334;316335;316336	425726;425727;425728	425727			3	
TVCDAAEKGVR	1	Acetyl (K)	1246.5976	0.59758535	434	O60664	PLIN3	Perilipin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	29.112	20.718	2	1.7223E-35	12252	160513_QHF_FH_JSI10Kac_3	196.27	140.6			1.0455	1.1572	36.996	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1817	1.4237	8.4752	2	0	Median	0.66285	0.65401	11.655	2	0	Median	1.0618	1.1572	12.023	2	0	Median	160120000	78923000	81194000	0	0	0	43070000	19521000	23549000	50753000	30460000	20293000	66293000	28942000	37351000	52412	434	49358	316337;316338;316339;316340;316341;316342	425729;425730;425731;425732;425733;425734;425735;425736	425736	221		8	
TVDCPFTVTFYGALFR	0	Unmodified	1892.9131	0.91310583	1772	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	94.973	86.789	2	0.00015222	48574	160513_QHF_FH_JSI11Kac_6	117.21	93.834			0.60585	0.60745	20.829	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.62061	0.74113	NaN	1	1	Median	0.60585	0.58033	NaN	1	0	Median	0.83148	0.87825	NaN	1	1	Median	220290000	144010000	76282000	0	0	0	90684000	60082000	30602000	82609000	52174000	30435000	47001000	31755000	15246000	52413	1772	49359	316343;316344;316345	425737;425738;425739	425737			3	
TVDDVIK	1	Unmodified	788.42798	0.42798405	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	22.776	22.242	2	0.0063576	19533	160511_QHF_FH_JSI12i_1	79.451	16.145			0.64708	0.58315	19.2	4	1	Linear	0.68728	0.57035	NaN	1	0	Median	0.41938	0.49955	NaN	1	0	Median	0.58724	0.54999	NaN	1	0	Median	0.36482	0.37338	NaN	1	1	Median	281290000	187630000	93666000	76792000	48950000	27842000	63719000	47592000	16127000	70738000	43923000	26814000	70043000	47160000	22882000	52414	5480	49360	316346;316347;316348;316349;316350	425740;425741;425742;425743;425744	425742			5	
TVDFTQDSNYLLTGGQDK	1	Unmodified	2000.9327	0.93271488	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	73.678	73.176	2;3	1.142E-236	65169	160511_QHF_FH_JSI9i_1	411.5	389.74			1.0068	0.988	8.6702	8	0	Median	1.0888	0.88195	6.8057	2	0	Median	0.81911	0.97272	12.278	2	0	Median	1.0171	1.0045	2.4994	2	0	Median	0.97834	1.0331	6.1572	2	0	Median	3060200000	1569300000	1491000000	529010000	270800000	258210000	917620000	505340000	412280000	867340000	392440000	474900000	746260000	400680000	345580000	52415	5595	49361	316351;316352;316353;316354;316355;316356;316357;316358	425745;425746;425747;425748;425749;425750;425751;425752;425753;425754;425755;425756;425757;425758;425759;425760;425761;425762;425763;425764;425765;425766;425767;425768;425769;425770;425771;425772	425767			28	
TVDGMQQEGTPYTGILYAGIMLTK	1	Unmodified	2586.271	0.27096141	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS			8.5	7.5	1								1		2			98.188	95.313	3	2.6101E-08	92451	160511_QHF_FH_JSI10i_1	81.974	70.674			0.73524	0.86832	18.379	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73524	0.86832	18.379	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236450000	150210000	86240000	0	0	0	236450000	150210000	86240000	0	0	0	0	0	0	52416	1205	49362	316359;316360	425773;425774	425773			2	
TVDGPSGK	1	Unmodified	759.37628	0.37628284	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.31	8	4	3		3	4	2	3	4	6	7	9	9	6.4921	1.8545	2	0.00017492	5165	160513_QHF_FH_JSI9Kac_3	119.29	76.291			0.88548	0.93811	73.849	29	2	Median	1.1159	1.0118	46.812	6	0	Median	0.77925	0.89987	34.083	6	0	Median	1.0276	1.0292	124.14	9	2	Median	0.84612	0.86819	13.308	8	0	Median	168910000000	79057000000	89854000000	41173000000	18371000000	22802000000	42326000000	21319000000	21007000000	42642000000	18214000000	24428000000	42771000000	21154000000	21617000000	52417	812	49363	316361;316362;316363;316364;316365;316366;316367;316368;316369;316370;316371;316372;316373;316374;316375;316376;316377;316378;316379;316380;316381;316382;316383;316384;316385;316386;316387;316388;316389;316390;316391	425775;425776;425777;425778;425779;425780;425781;425782;425783;425784;425785;425786;425787;425788;425789;425790;425791;425792;425793;425794;425795;425796;425797;425798;425799;425800;425801;425802;425803;425804;425805;425806;425807;425808;425809;425810;425811	425794			37	
TVDGPSGKLWR	1	Acetyl (K)	1256.6513	0.65133548	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.705							5	9	4	3	5	5	5	60.351	49.948	2;3	2.2651E-35	26989	160513_QHF_FH_JSI11Kac_6	194.06	130.49			0.8163	0.893	240.24	13	3	Median	1.1985	1.0632	2.9826	2	0	Median	0.8163	0.893	11.544	3	0	Median	0.7194	0.71323	360.58	5	2	Median	0.92945	0.11437	251.97	3	1	Plateau	3841000000	2318300000	1522700000	590690000	278160000	312530000	1381600000	763570000	618030000	1308300000	793140000	515160000	560420000	483430000	76992000	52418	812	49364	316392;316393;316394;316395;316396;316397;316398;316399;316400;316401;316402;316403;316404;316405;316406;316407;316408;316409	425812;425813;425814;425815;425816;425817;425818;425819;425820;425821;425822;425823;425824;425825;425826;425827;425828;425829;425830;425831;425832;425833;425834;425835;425836;425837;425838	425815	454		27	
TVDIEGKK	2	Unmodified	888.49165	0.49164694	1730	P51153	RAB13	Ras-related protein Rab-13	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.537	10.632	2	0.01473	7929	160511_QHF_FH_JSI12i_3	51.346	24.092			0.87721	0.87824	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87721	0.87824	NaN	1	0	Median	42152000	21818000	20334000	0	0	0	0	0	0	0	0	0	42152000	21818000	20334000	52419	1730	49365	316410	425839	425839			1	
TVDKHSDEYK	2	Acetyl (K)	1262.5779	0.57789577	1123	P17676	CEBPB	CCAAT/enhancer-binding protein beta	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		18.695	11.069	3	0.0021334	8159	160513_QHF_FH_JSI11Kac_4	58.274	52.432			0.63132	0.62287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63132	0.62287	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7879200	5018400	2860800	0	0	0	0	0	0	7879200	5018400	2860800	0	0	0	52420	1123	49366	316411	425840	425840	971		1	
TVDLGLTGNHGVVHPSLADSANK	1	Unmodified	2301.1713	0.17132244	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	3	2	56.483	55.881	3;4	2.2155E-41	49440	160511_QHF_FH_JSI11i_3	227.2	213.29			0.91427	0.93669	16.446	8	1	Median	0.96626	0.84675	11.43	2	0	Median	0.95846	1.1579	10.699	2	0	Median	1.0415	1.0212	22.429	2	1	Median	0.88875	0.91594	6.0136	2	0	Median	1368300000	692120000	676170000	143070000	76531000	66542000	212320000	106810000	105510000	288280000	130580000	157700000	724610000	378190000	346420000	52421	4777	49367	316412;316413;316414;316415;316416;316417;316418;316419;316420	425841;425842;425843;425844;425845;425846;425847;425848;425849;425850	425841			10	
TVDLKPDWGK	2	Unmodified	1157.6081	0.60807369	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	5	2	7	9					3	1	4	5	5	8	45.413	43.215	2;3	1.1226E-13	36906	160511_QHF_FH_JSI12i_3	166.07	166.07			1.0296	1.0622	43.503	21	4	Median	1.1919	1.0026	24.223	4	0	Median	0.89607	1.0422	11.682	5	0	Median	1.071	1.0222	8.4839	4	1	Median	1.0858	1.1698	67.66	8	3	Median	6790000000	3520300000	3269700000	712560000	319400000	393160000	970490000	493060000	477440000	1660500000	933030000	727430000	3446500000	1774800000	1671700000	52422	1386	49368	316421;316422;316423;316424;316425;316426;316427;316428;316429;316430;316431;316432;316433;316434;316435;316436;316437;316438;316439;316440;316441;316442	425851;425852;425853;425854;425855;425856;425857;425858;425859;425860;425861;425862;425863;425864;425865;425866;425867;425868;425869;425870;425871;425872;425873;425874;425875;425876;425877;425878;425879;425880;425881;425882;425883;425884;425885;425886;425887	425885			37	
TVDLKPDWGK	2	Acetyl (K)	1199.6186	0.61863837	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	70.001	59.341	2	0.0075574	32232	160513_QHF_FH_JSI12Kac_4	62.303	49.266			0.61113	0.68995	3.7495	2	1	Median	NaN	NaN	NaN	0	0	Median	0.59177	0.70848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63113	0.67189	NaN	1	0	Median	9271200	4327900	4943300	0	0	0	4352400	1706800	2645600	0	0	0	4918800	2621100	2297800	52423	1386	49368	316443;316444	425888;425889	425889	1339		2	
TVDLQDAEEAVELVQYAYFK	1	Unmodified	2330.1318	0.13180862	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4	4.96	2	2	2						1	1	1	2	3	101.83	100.43	3	2.7392E-16	90149	160511_QHF_FH_JSI11i_2	155.28	147			1.1006	1.1583	24.959	7	2	Median	1.4703	1.2933	NaN	1	1	Median	0.92294	1.0691	NaN	1	0	Median	0.87983	0.86222	26.311	2	0	Median	1.1006	1.1625	19.74	3	1	Plateau	901270000	442840000	458430000	127100000	48101000	78995000	152840000	81212000	71628000	319070000	172540000	146520000	302270000	140980000	161280000	52424	1254	49369	316445;316446;316447;316448;316449;316450;316451	425890;425891;425892;425893;425894	425893			5	
TVDLSSHLAK	1	Unmodified	1069.5768	0.57677356	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		8						2		2	2	4	2	30.943	29.09	2;3	1.8289E-05	24544	160511_QHF_FH_JSI12i_2	87.789	67.648			0.92426	1.0419	70.952	9	3	Median	1.3559	1.165	NaN	1	0	Median	0.37452	0.46151	15.963	2	1	Median	0.9653	0.96828	97.407	4	2	Median	1.0183	1.117	9.8439	2	0	Median	668820000	332860000	335950000	96737000	33700000	63037000	118570000	81716000	36859000	257330000	139160000	118170000	196180000	78285000	117890000	52425	816	49370	316452;316453;316454;316455;316456;316457;316458;316459;316460;316461	425895;425896;425897;425898;425899;425900;425901;425902	425895			8	
TVDNFVALATGEK	1	Unmodified	1363.6983	0.69834526	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.07	8	8	4			6	7	4		10	10	8	9	67.158	61.874	2;3	1.0732E-52	60420	160511_QHF_FH_JSI10i_2	253.97	217.42			1.0548	1.0542	38.474	36	2	Median	1.1667	0.98473	65.612	9	1	Median	0.78495	0.93755	29.045	10	1	Median	1.1314	1.0776	15.409	8	0	Median	1.0878	1.1651	7.2881	9	0	Median	29897000000	14630000000	15267000000	6559200000	3073400000	3485800000	8658200000	4870800000	3787300000	8212400000	3704100000	4508300000	6466800000	2981200000	3485600000	52426	1224	49371	316462;316463;316464;316465;316466;316467;316468;316469;316470;316471;316472;316473;316474;316475;316476;316477;316478;316479;316480;316481;316482;316483;316484;316485;316486;316487;316488;316489;316490;316491;316492;316493;316494;316495;316496;316497;316498	425903;425904;425905;425906;425907;425908;425909;425910;425911;425912;425913;425914;425915;425916;425917;425918;425919;425920;425921;425922;425923;425924;425925;425926;425927;425928;425929;425930;425931;425932;425933;425934;425935;425936;425937;425938;425939;425940;425941;425942;425943;425944;425945;425946;425947;425948;425949;425950;425951;425952;425953;425954;425955;425956;425957;425958;425959;425960;425961;425962;425963;425964;425965;425966;425967;425968;425969;425970;425971;425972;425973;425974;425975;425976;425977;425978;425979;425980;425981;425982;425983;425984;425985;425986;425987;425988	425982			86	
TVDNFVALATGEKGFGYK	2	Acetyl (K)	1957.9785	0.97854286	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		87.857	77.367	2;3	3.8764E-09	40512	160513_QHF_FH_JSI11Kac_5	119.01	99.804			0.30583	0.295	17.108	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30583	0.295	17.108	2	0	Median	NaN	NaN	NaN	0	0	Median	15677000	11896000	3781200	0	0	0	0	0	0	15677000	11896000	3781200	0	0	0	52427	1224	49372	316499;316500	425989;425990;425991	425991	1096;1102		3	
TVDPETQAR	0	Unmodified	1015.4934	0.49343786	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.869	10.485	2	0.00057148	8315	160511_QHF_FH_JSI10i_1	78.192	60.806			0.71692	0.71478	50.132	4	0	Median	0.37085	0.30945	NaN	1	0	Median	0.82059	0.97858	NaN	1	0	Median	0.808	0.79533	NaN	1	0	Median	0.63611	0.64239	NaN	1	0	Median	587940000	331420000	256520000	210490000	130260000	80229000	131980000	76616000	55365000	115040000	47248000	67792000	130430000	77292000	53137000	52428	3434;489	49373	316501;316502;316503;316504	425992;425993;425994;425995;425996;425997;425998	425997			7	
TVDVAAEK	1	Unmodified	831.4338	0.43379771	2117	P82979	SARNP	SAP domain-containing ribonucleoprotein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		13.646	13.517	2	0.0027508	11013	160511_QHF_FH_JSI11i_1	77.732	37.629			0.92123	0.88752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92123	0.88752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	569820000	263620000	306200000	0	0	0	0	0	0	569820000	263620000	306200000	0	0	0	52429	2117	49374	316505	425999	425999			1	
TVDWALAEYMAFGSLLK	1	Unmodified	1913.9597	0.95972167	2185	Q02218;Q9ULD0	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		102.84	102.76	2;3	2.474E-11	90566	160511_QHF_FH_JSI11i_2	175.28	150.43			1.163	1.1307	35.191	4	3	Median	1.2769	1.127	NaN	1	1	Median	1.1929	1.4075	NaN	1	1	Median	0.84365	0.83909	42.648	2	1	Median	NaN	NaN	NaN	0	0	Median	182160000	100460000	81700000	27865000	9800600	18064000	17423000	7132700	10290000	136870000	83527000	53346000	0	0	0	52430	2185	49375	316506;316507;316508;316509	426000;426001;426002;426003	426002			4	
TVEAEAAHGTVTR	0	Unmodified	1340.6684	0.66844211	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.79	4	8	7				3	4	1	6	7	8	6	13.865	11.016	2;3	2.0016E-25	7249	160513_QHF_FH_JSI11Kac_5	161.21	106.73			0.99579	1.0302	11.45	27	2	Median	1.2318	1.019	12.122	6	0	Median	0.93939	1.0865	7.8137	7	1	Median	1.0298	1.0002	9.1826	8	1	Median	0.87944	0.95313	16.685	6	0	Median	9500400000	4752800000	4747700000	1364800000	610910000	753940000	1803200000	1042900000	760250000	3354700000	1553200000	1801500000	2977700000	1545800000	1432000000	52431	576	49376	316510;316511;316512;316513;316514;316515;316516;316517;316518;316519;316520;316521;316522;316523;316524;316525;316526;316527;316528;316529;316530;316531;316532;316533;316534;316535;316536	426004;426005;426006;426007;426008;426009;426010;426011;426012;426013;426014;426015;426016;426017;426018;426019;426020;426021;426022;426023;426024;426025;426026;426027;426028;426029;426030;426031;426032;426033;426034;426035;426036;426037;426038;426039;426040;426041;426042;426043;426044;426045;426046;426047;426048;426049;426050	426037			47	
TVEALYK	1	Unmodified	822.44872	0.4487195	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.25	4	5	4				3	1		3	4	5	5	28.321	25.517	2	0.0017493	15961	160513_QHF_FH_JSI11Kac_4	105.39	50.865			0.94392	1.0612	57.324	17	4	Median	1.2334	1.0612	26.261	3	0	Median	0.90564	1.0798	74.723	4	2	Median	1.1722	1.1336	23.804	5	0	Median	0.88487	0.94113	78.845	5	2	Median	8398700000	3829200000	4569500000	1527700000	681570000	846180000	1981800000	948370000	1033400000	2572900000	1116500000	1456400000	2316300000	1082700000	1233500000	52432	2146	49377	316537;316538;316539;316540;316541;316542;316543;316544;316545;316546;316547;316548;316549;316550;316551;316552;316553	426051;426052;426053;426054;426055;426056;426057;426058;426059;426060;426061;426062;426063;426064;426065;426066;426067;426068;426069;426070;426071;426072;426073	426062			23	
TVEALYKFVVPK	2	Acetyl (K)	1434.8123	0.8122528	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.2	0.4								4	1		1	3	1	86.668	76.444	2;3	8.396E-19	40122	160513_QHF_FH_JSI11Kac_5	153.12	135.26			0.31153	0.30233	89.177	4	0	Median	NaN	NaN	NaN	0	0	Median	1.532	1.7466	NaN	1	0	Median	0.28565	0.28547	7.2578	3	0	Median	NaN	NaN	NaN	0	0	Median	195440000	145650000	49793000	0	0	0	1961700	864080	1097600	192670000	143980000	48695000	806710	806710	0	52433	2146	49378	316554;316555;316556;316557;316558	426074;426075;426076;426077;426078;426079;426080	426075	2245;2249		6	
TVEAVQLNQALLLLPWTMHALVILK	1	Unmodified	2813.6241	0.62412845	582	O75911	DHRS3	Short-chain dehydrogenase/reductase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		100.55	92.444	3	2.2813E-27	52475	160513_QHF_FH_JSI11Kac_6	141.36	135.2			0.78025	0.73546	2.2345	3	1	Median	0.8665	0.7459	NaN	1	1	Median	0.60786	0.71395	NaN	1	0	Median	0.78025	0.73546	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	681380000	410850000	270530000	110550000	77052000	33502000	171700000	106500000	65208000	399120000	227300000	171820000	0	0	0	52434	582	49379	316559;316560;316561	426081;426082;426083;426084;426085	426081			5	
TVEDVFLRK	1	Unmodified	1105.6132	0.61315906	4050	Q96EL2	MRPS24	28S ribosomal protein S24, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	40.787	40.265	3	1.8261E-05	34237	160511_QHF_FH_JSI12i_3	82.645	72.414			1.1444	1.1743	105.65	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26783	0.25143	NaN	1	0	Median	1.4199	1.4937	34.025	2	1	Median	256970000	164560000	92414000	0	0	0	0	0	0	58660000	43512000	15148000	198310000	121050000	77266000	52435	4050	49380	316562;316563;316564	426086;426087;426088	426088			3	
TVEEAENIAVTSGVVR	0	Unmodified	1672.8632	0.86317875	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	4.44	8	3	1				2			3	5	3	3	56.99	55.388	2;3	1.3591E-159	50415	160511_QHF_FH_JSI12i_1	306.08	270.54			1.0754	1.0793	31.372	12	3	Median	1.0656	0.88214	11.712	3	1	Median	0.60388	0.72307	33.778	4	1	Median	1.1781	1.1503	3.4219	2	0	Median	1.0229	1.0918	29.553	3	1	Plateau	4189200000	2094900000	2094400000	882230000	410720000	471510000	1145800000	612970000	532830000	1114400000	557840000	556510000	1046800000	513340000	533510000	52436	599	49381	316565;316566;316567;316568;316569;316570;316571;316572;316573;316574;316575;316576;316577;316578	426089;426090;426091;426092;426093;426094;426095;426096;426097;426098;426099;426100;426101;426102;426103;426104;426105;426106;426107;426108;426109;426110	426098			22	
TVEEAENIAVTSGVVRK	1	Unmodified	1800.9581	0.95814177	599	O76070	SNCG	Gamma-synuclein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.654	3	11	6							2	5	7	6	47.882	47.196	2;3	4.8367E-28	41714	160511_QHF_FH_JSI11i_3	222.1	197.25			1.0253	1.0964	16.068	18	7	Median	0.91804	0.79496	10.789	2	0	Median	0.96687	1.1793	10.954	5	3	Median	1.1405	1.1918	5.6442	6	3	Linear	0.89553	0.95333	16.942	5	1	Median	3939200000	1686600000	2252700000	528190000	294390000	233800000	810520000	414540000	395980000	1452400000	488750000	963610000	1148200000	488870000	659300000	52437	599	49382	316579;316580;316581;316582;316583;316584;316585;316586;316587;316588;316589;316590;316591;316592;316593;316594;316595;316596;316597;316598	426111;426112;426113;426114;426115;426116;426117;426118;426119;426120;426121;426122;426123;426124;426125;426126;426127;426128;426129;426130;426131;426132;426133;426134;426135;426136	426114			25	
TVEEEDQIFLDGQENK	1	Unmodified	1892.864	0.86396661	35;4105	A8CG34;Q6PJE2;Q96HA1	POM121C;POMZP3;POM121	Nuclear envelope pore membrane protein POM 121C;POM121 and ZP3 fusion protein;Nuclear envelope pore membrane protein POM 121	no	no	0	0	0	0			By MS/MS		1	0	1											1		64.456	64.013	2	0.0085208	58183	160511_QHF_FH_JSI11i_1	47.288	30.656			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52438	35;4105	49383	316599	426137	426137			1	
TVEELLETGLIQVATK	1	Unmodified	1742.9666	0.96658119	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.35	1	6								1	2	1	3	97.722	97.515	2;3	7.5882E-08	85495	160511_QHF_FH_JSI11i_2	136.99	111.75			0.81935	0.8667	46.691	5	3	Median	NaN	NaN	NaN	0	0	Median	0.46166	0.56207	52.667	2	1	Median	NaN	NaN	NaN	0	0	Median	0.92731	0.98409	24.153	3	2	Median	73079000	35783000	37297000	0	0	0	27986000	20705000	7281000	10622000	0	10622000	34471000	15078000	19393000	52439	3328	49384	316600;316601;316602;316603;316604;316605;316606	426138;426139;426140;426141;426142;426143;426144;426145;426146	426144			8	
TVEEVLGHFGVNESTGLSLEQVK	1	Unmodified	2471.2544	0.25438337	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.829	84.12	3	1.9574E-59	73970	160511_QHF_FH_JSI11i_2	217.84	206.72			1.0356	0.98685	33.927	4	1	Median	1.0813	0.90886	NaN	1	0	Median	1.5617	1.8808	NaN	1	1	Median	0.99187	1.0165	NaN	1	0	Median	0.85553	0.9581	NaN	1	0	Median	444940000	222270000	222670000	73014000	35992000	37021000	92776000	33163000	59614000	161360000	86187000	75177000	117790000	66926000	50860000	52440	1103	49385	316607;316608;316609;316610	426147;426148;426149;426150;426151;426152;426153	426151			7	
TVEEVLGHFGVNESTGLSLEQVKK	2	Unmodified	2599.3493	0.34934639	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.518	76.242	4	0.03804	66274	160511_QHF_FH_JSI12i_3	20.24	12.879			0.41003	0.40791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41003	0.40791	NaN	1	1	Median	26687000	16987000	9700100	0	0	0	0	0	0	0	0	0	26687000	16987000	9700100	52441	1103	49386	316611	426154	426154			1	
TVEFLQEYIVNR	0	Unmodified	1509.7827	0.78274359	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	80.514	80.393	2	1.7934E-41	69854	160511_QHF_FH_JSI12i_3	198.62	115.98			1.0839	1.0395	7.6583	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0758	0.98467	NaN	1	0	Median	1.0921	1.0973	NaN	1	0	Median	180090000	80371000	99724000	0	0	0	0	0	0	93101000	42242000	50859000	86994000	38129000	48865000	52442	384	49387	316612;316613;316614	426155;426156;426157;426158;426159	426159			5	
TVEFQHIIPISAVTGEGIEELK	1	Unmodified	2409.2791	0.27914156	17	A4D1E9	GTPBP10	GTP-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	1	2	4	100.27	100.16	3	1.0001E-07	87930	160511_QHF_FH_JSI11i_2	84.573	76.484			1.1116	1.2262	24.469	6	3	Median	1.055	0.9087	NaN	1	0	Median	0.97444	1.2114	NaN	1	1	Median	1.6425	1.6088	NaN	1	0	Median	1.7702	1.8039	23.535	3	2	Plateau	200040000	87846000	112200000	23749000	11436000	12313000	27862000	14623000	13239000	49805000	18275000	31530000	98627000	43512000	55115000	52443	17	49388	316615;316616;316617;316618;316619;316620;316621;316622	426160;426161;426162;426163;426164;426165;426166;426167;426168	426166			9	
TVEGAGSIAAATGFVK	1	Unmodified	1477.7777	0.77765821	1472	P37840	SNCA	Alpha-synuclein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.71	0.452	2	5								1	2	4		65.481	64.876	2;3	1.3918E-07	56542	160511_QHF_FH_JSI11i_2	167.14	119.21			0.87255	0.88446	25.25	7	4	Median	1.5956	1.3655	NaN	1	1	Median	0.94307	1.1059	32.973	2	1	Median	0.86625	0.88275	11.162	4	2	Median	NaN	NaN	NaN	0	0	Median	358930000	181530000	177400000	55604000	23721000	31883000	71618000	35579000	36039000	231710000	122230000	109480000	0	0	0	52444	1472	49389	316623;316624;316625;316626;316627;316628;316629	426169;426170;426171;426172;426173	426171			5	
TVEGAGSIAAATGFVKK	2	Unmodified	1605.8726	0.87262123	1472	P37840	SNCA	Alpha-synuclein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	56.212	56.088	3	0.00021564	49711	160511_QHF_FH_JSI11i_3	71.286	51.608			0.75026	0.74579	19.775	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69911	0.64846	NaN	1	1	Median	0.80516	0.85772	NaN	1	0	Median	105960000	53892000	52069000	0	0	0	0	0	0	35416000	26677000	8738900	70545000	27215000	43330000	52445	1472	49390	316630;316631	426174;426175	426174			2	
TVEGALK	1	Unmodified	716.40685	0.40685468	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	12.664	12.177	2	0.01534	10015	160511_QHF_FH_JSI12i_1	64.803	9.3622			0.91858	0.96918	14.912	8	0	Median	1.1876	0.98767	26.661	2	0	Median	0.73043	0.87789	16.258	2	0	Median	1.0521	1.0417	6.235	2	0	Median	0.82336	0.8839	10.759	2	0	Median	2665600000	1504400000	1161300000	552100000	293690000	258400000	705400000	449810000	255590000	779030000	432410000	346620000	629110000	328470000	300640000	52446	2780	49391	316632;316633;316634;316635;316636;316637;316638;316639	426176;426177;426178;426179;426180;426181;426182;426183	426178			8	
TVEGVLIVHEHR	0	Unmodified	1387.7572	0.75719754	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	12.8	5.63			1						3	1		1	2	37.525	31.364	3	0.00065564	25615	160511_QHF_FH_JSI12i_3	58.487	52.538			4.7749	1.5257	75.55	3	2	Plateau	1.4248	1.1774	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.585	2.7244	81.996	2	1	Median	55509000	16046000	39463000	16410000	5978800	10431000	0	0	0	0	0	0	39099000	10067000	29032000	52447	379	49392	316640;316641;316642;316643	426184;426185;426186;426187	426186			4	
TVEHGFPNQPSALAFDPELR	0	Unmodified	2224.0913	0.091281208	2653	Q15334	LLGL1	Lethal(2) giant larvae protein homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								2	1	1	73.905	73.452	3	9.2038E-05	65252	160511_QHF_FH_JSI10i_2	42.908	30.417			1.2295	1.2931	10.145	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0065	1.2314	9.0909	2	2	Median	1.4087	1.2733	NaN	1	1	Median	1.45	1.4771	NaN	1	0	Median	167350000	83373000	83979000	0	0	0	82979000	43049000	39930000	33468000	14642000	18826000	50905000	25682000	25223000	52448	2653	49393	316644;316645;316646;316647	426188;426189;426190;426191	426190			3	
TVEIVHIDIADR	0	Unmodified	1379.7409	0.74087877	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							1			2	62.735	61.89	3	2.8558E-05	53127	160511_QHF_FH_JSI12i_2	85.973	77.869			0.87855	0.99086	13.3	3	0	Plateau	1.5202	1.2781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96277	1.0212	4.2715	2	0	Median	107450000	51940000	55513000	22576000	8945700	13630000	0	0	0	0	0	0	84877000	42994000	41882000	52449	1636	49394	316648;316649;316650	426192;426193	426192			1	
TVEKELTYEK	2	Acetyl (K)	1280.65	0.64999808	1425	P35237	SERPINB6	Serpin B6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	47.385	38.203	2	0.0024966	21270	160513_QHF_FH_JSI11Kac_3	79.201	42.616			0.67735	0.73465	47.081	3	0	Median	NaN	NaN	NaN	0	0	Median	0.80051	0.92992	NaN	1	0	Median	0.38012	0.37531	NaN	1	0	Median	0.67735	0.73465	NaN	1	0	Median	19505000	13006000	6499000	0	0	0	6276400	3263000	3013400	8514700	6618600	1896200	4713700	3124300	1589400	52450	1425	49395	316651;316652;316653	426194;426195;426196	426194	1386		2	
TVELLSGVVDQTK	1	Unmodified	1387.7559	0.75586013	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	5.55	8	6					5			3	5	6	5	69.28	66.346	2;3	4.098E-22	60730	160511_QHF_FH_JSI11i_1	174.87	144.62			0.9485	0.96415	26.577	18	5	Median	1.1169	0.91387	7.9852	3	0	Plateau	0.88355	1.0386	12.595	5	0	Median	0.96256	0.93301	43.59	6	3	Median	0.88809	0.92234	18.412	4	2	Median	874630000	443300000	431330000	188730000	83613000	105120000	201150000	105240000	95910000	214870000	107230000	107640000	269870000	147210000	122660000	52451	5345	49396	316654;316655;316656;316657;316658;316659;316660;316661;316662;316663;316664;316665;316666;316667;316668;316669;316670;316671;316672	426197;426198;426199;426200;426201;426202;426203;426204;426205;426206;426207;426208;426209;426210;426211;426212;426213;426214;426215;426216;426217;426218;426219;426220;426221;426222;426223;426224;426225;426226	426200			30	
TVELPLNK	1	Unmodified	912.52803	0.52803245	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.402	45.75	2	0.0045508	41573	160511_QHF_FH_JSI12i_1	67.169	14.003			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52452	4472	49397	316673	426227	426227			1	
TVELQGK	1	Unmodified	773.42832	0.42831841	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.577	13.139	2	0.017401	10574	160511_QHF_FH_JSI11i_1	62.717	10.034			0.55115	0.52444	26.362	4	4	Median	0.53627	0.444	NaN	1	1	Median	0.68799	0.81634	NaN	1	1	Median	0.56645	0.5484	NaN	1	1	Median	0.48312	0.50152	NaN	1	1	Median	2049400000	1432100000	617320000	522900000	345490000	177410000	473230000	321160000	152070000	542130000	365070000	177070000	511160000	400390000	110780000	52453	1933	49398	316674;316675;316676;316677	426228;426229;426230;426231	426228			4	
TVELSIPADPANLDSEAK	1	Unmodified	1868.9367	0.93673763	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.016	76.538	2	2.0579E-16	69318	160511_QHF_FH_JSI10i_1	163.99	138.55			0.85537	0.88245	5.5823	4	0	Median	1.1297	0.91948	NaN	1	0	Median	0.80842	0.94142	NaN	1	0	Median	0.90504	0.84484	NaN	1	0	Median	0.78902	0.84692	NaN	1	0	Median	184210000	100540000	83674000	48315000	22294000	26021000	48278000	32308000	15970000	50444000	25327000	25117000	37176000	20611000	16564000	52454	2348	49399	316678;316679;316680;316681	426232;426233;426234;426235;426236;426237;426238;426239	426237			8	
TVENVTVFGTASASK	1	Unmodified	1509.7675	0.76748745	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								3	2	2	5	50.571	49.833	2;3	3.7715E-22	44881	160511_QHF_FH_JSI11i_1	182.07	167.1			0.94972	0.86134	49.025	8	3	Median	0.63034	0.53289	60.157	2	1	Median	0.64182	0.76527	11.05	2	0	Median	1.1777	1.1412	34.111	2	1	Median	1.2808	1.3466	39.192	2	1	Median	690910000	356180000	334720000	153150000	75867000	77285000	184200000	107140000	77056000	165570000	79262000	86303000	187990000	93913000	94078000	52455	4279	49400	316682;316683;316684;316685;316686;316687;316688;316689;316690;316691;316692;316693	426240;426241;426242;426243;426244;426245;426246;426247;426248;426249;426250;426251;426252;426253;426254;426255;426256;426257;426258;426259;426260	426240			21	
TVEPPISQVGNVDTASELEK	1	Unmodified	2112.0586	0.058643676	644	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			68.403	67.772	2	1.5445E-05	61356	160511_QHF_FH_JSI10i_1	91.743	69.545			1.6613	1.646	69.322	2	2	Median	1.2087	1.0082	NaN	1	1	Median	2.2834	2.6872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66405000	29160000	37245000	23694000	13416000	10278000	42711000	15744000	26966000	0	0	0	0	0	0	52456	644	49401	316694;316695	426261;426262	426261			2	
TVEPTGK	1	Unmodified	730.38612	0.38611924	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	6.4383	6.2066	2	0.011257	4178	160511_QHF_FH_JSI10i_1	71.296	46.297			0.84345	0.8067	4.8593	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69997	0.8067	NaN	1	0	Median	0.87332	0.84531	NaN	1	0	Median	0.84345	0.88901	NaN	1	0	Median	914120000	553060000	361050000	0	0	0	315660000	199470000	116190000	301390000	171690000	129700000	297070000	181900000	115160000	52457	962	49402	316696;316697;316698	426263;426264	426264			2	
TVEQTATTTNK	1	Unmodified	1192.5935	0.59354583	906	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B''	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.38	7		3		4	3				2	8	4	3	8.6946	5.2994	2	1.1188E-24	5493	160511_QHF_FH_JSI10i_1	224.02	190.22			1.1988	1.1846	44.372	16	14	Median	1.3842	1.1432	7.1189	2	2	Median	0.99583	1.1673	46.2	7	7	Median	1.3018	1.2727	51.829	4	3	Median	1.2261	1.281	62.29	3	2	Median	5380100000	2676300000	2703900000	764910000	348410000	416490000	1655400000	832000000	823370000	1527200000	693860000	833330000	1432700000	802000000	630670000	52458	906	49403	316699;316700;316701;316702;316703;316704;316705;316706;316707;316708;316709;316710;316711;316712;316713;316714;316715	426265;426266;426267;426268;426269;426270;426271;426272;426273;426274;426275;426276;426277;426278;426279;426280;426281;426282;426283	426274			19	
TVESEAASYLDQISR	0	Unmodified	1667.8002	0.80024414	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.462	9	4								4	3	3	3	66.24	65.516	2;3	1.1087E-116	59664	160511_QHF_FH_JSI12i_1	272.97	202.87			0.98696	1.033	71.275	13	2	Median	8.3718	1.0655	127.12	4	1	Linear	0.84425	0.99971	4.2085	3	1	Median	1.0635	1.0338	3.9118	3	0	Median	0.9342	0.97377	3.2979	3	0	Plateau	4030200000	1960200000	2069900000	981330000	348100000	633230000	705920000	404380000	301540000	1219600000	617050000	602560000	1123300000	590710000	532590000	52459	1950	49404	316716;316717;316718;316719;316720;316721;316722;316723;316724;316725;316726;316727;316728	426284;426285;426286;426287;426288;426289;426290;426291;426292;426293;426294;426295;426296;426297;426298;426299;426300;426301;426302;426303;426304;426305;426306;426307	426290			24	
TVESITDIR	0	Unmodified	1032.5451	0.54513908	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.3	5	4	1			3	3	4		5	5	6	4	43.838	38.451	2	7.5563E-42	34581	160511_QHF_FH_JSI11i_1	220.51	136.27			0.94343	0.92343	23.837	20	4	Median	1.0359	0.87812	40.116	5	3	Median	0.70753	0.84021	20.417	5	1	Median	1.0054	0.99466	8.739	6	0	Median	0.94394	1.0195	15.309	4	0	Median	5133100000	2566900000	2566200000	1196100000	540440000	655650000	1158500000	606050000	552430000	1600500000	773710000	826760000	1178000000	646700000	531320000	52460	996	49405	316729;316730;316731;316732;316733;316734;316735;316736;316737;316738;316739;316740;316741;316742;316743;316744;316745;316746;316747;316748	426308;426309;426310;426311;426312;426313;426314;426315;426316;426317;426318;426319;426320;426321;426322;426323;426324;426325;426326;426327;426328;426329;426330;426331;426332;426333;426334;426335;426336;426337;426338	426310			31	
TVESLEETLK	1	Unmodified	1147.5972	0.59723423	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7.25	5.76	1	1				2					3		1	50.089	45.106	2	6.4989E-05	39159	160511_QHF_FH_JSI10i_2	90.15	51.002			0.78323	0.92547	18.489	4	0	Median	NaN	NaN	NaN	0	0	Median	0.70631	0.85421	17.319	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.72622	0.78114	NaN	1	0	Median	640190000	342050000	298140000	0	0	0	635630000	339370000	296250000	0	0	0	4558800	2675700	1883100	52461	2581	49406	316749;316750;316751;316752	426339;426340;426341	426341			3	
TVESLEETLKK	2	Unmodified	1275.6922	0.69219725	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			39.563	38.597	3	0.033447	33887	160511_QHF_FH_JSI10i_2	44.564	33.658			0.68296	0.84888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68296	0.84888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67479000	37983000	29496000	0	0	0	67479000	37983000	29496000	0	0	0	0	0	0	52462	2581	49407	316753	426342	426342			0	
TVETEAVQMLK	1	Unmodified	1247.6431	0.64313856	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		51.722	50.916	2	0.03159	45935	160511_QHF_FH_JSI11i_1	54.982	25.895			1.1324	1.0373	0.87787	2	0	Median	1.2228	1.0437	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0486	1.0308	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	76303000	43162000	33140000	31700000	18512000	13188000	0	0	0	44603000	24650000	19953000	0	0	0	52463	2570	49408	316754;316755	426343;426344	426343			0	
TVETLLLR	0	Unmodified	943.57023	0.57023162	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	54.152	53.191	2	0.0012589	46962	160511_QHF_FH_JSI10i_2	91.9	49.031			0.80856	0.85822	3.188	4	0	Median	1.049	0.88772	NaN	1	0	Median	0.66831	0.82161	NaN	1	0	Median	0.85278	0.86158	NaN	1	0	Median	0.76663	0.85488	NaN	1	0	Median	481930000	239770000	242160000	94678000	36778000	57900000	132590000	71024000	61562000	155920000	81936000	73982000	98745000	50032000	48713000	52464	4777	49409	316756;316757;316758;316759	426345;426346;426347;426348	426348			4	
TVEVAEGEAVR	0	Unmodified	1158.5881	0.58806652	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	26.649	26.007	2	2.1313E-05	23200	160511_QHF_FH_JSI12i_1	119.68	55.416			1.0053	1.0368	30.136	5	0	Median	1.3081	1.0838	NaN	1	0	Median	0.5476	0.66191	30.22	2	0	Median	1.0635	1.0368	NaN	1	0	Median	1.0053	1.0734	NaN	1	0	Median	1512000000	758260000	753720000	363840000	159790000	204050000	453900000	258240000	195660000	341990000	164900000	177090000	352240000	175330000	176910000	52465	3323	49410	316760;316761;316762;316763;316764	426349;426350;426351;426352;426353;426354;426355	426352			7	
TVEVAEGEAVRTPQSVTAK	1	Unmodified	1971.0273	0.027283968	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	40.501	40.113	3	0.00010515	34234	160511_QHF_FH_JSI12i_3	61.648	46.256			2.7354	3.0556	127.43	2	1	Median	NaN	NaN	NaN	0	0	Median	6.1308	7.5236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2205	1.2409	NaN	1	0	Median	65101000	17774000	47327000	0	0	0	21335000	3705800	17629000	9858600	0	9858600	33908000	14068000	19840000	52466	3323	49411	316765;316766;316767	426356;426357;426358	426358			3	
TVEVKPGMK	2	Unmodified	987.5423	0.54230231	2285;3886	Q09472;Q92793	EP300;CREBBP	Histone acetyltransferase p300;CREB-binding protein	no	no	0	0	0	1				By MS/MS	3	0			1										1	15.019	15.082	2	0.010905	11881	160511_QHF_FH_JSI12i_3	61.962	24.404			1.4649	1.4405	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4649	1.4405	NaN	1	0	Median	45625000	17031000	28595000	0	0	0	0	0	0	0	0	0	45625000	17031000	28595000	52467	2285;3886	49412	316768	426359	426359			1	
TVEVLEPEVTK	1	Unmodified	1242.6707	0.67073352	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	49.596	48.917	2	0.021649	43585	160511_QHF_FH_JSI9i_1	71.03	36.644			0.94645	1.0502	11.945	4	0	Linear	1.1074	0.89164	NaN	1	0	Median	0.84919	1.0121	NaN	1	0	Median	1.0548	1.0182	NaN	1	0	Median	0.75062	0.79188	NaN	1	0	Median	722660000	372300000	350360000	176910000	82452000	94459000	188470000	106220000	82255000	215610000	106240000	109380000	141660000	77394000	64267000	52468	3229;4066	49413	316769;316770;316771;316772	426360	426360			0	
TVEYLHAQGVVHR	0	Unmodified	1507.7896	0.7895603	1755	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	3	2	1	36.105	29.512	3;4	2.1338E-07	24255	160511_QHF_FH_JSI12i_3	104.24	92.77			1.1364	1.0397	31.589	7	2	Median	1.3034	1.1071	16.067	2	0	Median	0.86801	1.0397	39.389	3	2	Median	0.91917	0.89832	NaN	1	0	Median	1.7837	1.7952	NaN	1	0	Median	149740000	61822000	87916000	15965000	7035900	8928600	40763000	15662000	25101000	6334500	3617400	2717100	86676000	35507000	51169000	52469	1755	49414	316773;316774;316775;316776;316777;316778;316779;316780	426361;426362;426363;426364;426365;426366;426367;426368;426369;426370;426371	426368			10	
TVEYLHSQGVVHR	0	Unmodified	1523.7845	0.78447492	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.487	24.461	2	1.6161E-05	20279	160511_QHF_FH_JSI12i_3	119.16	81.434			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4699500	4699500	0	0	0	0	0	0	0	0	0	0	4699500	4699500	0	52470	2669	49415	316781	426372	426372			1	
TVFAEHISDECK	1	Unmodified	1434.6449	0.64492948	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.02	1	9	5					6	1	4	5	6	7	35.416	31.791	2;3	2.4988E-08	26780	160511_QHF_FH_JSI11i_2	140.3	105.77			1.121	1.1365	34.453	19	2	Median	1.5135	1.3015	28.559	3	0	Median	0.93397	1.1365	19.282	3	0	Median	0.93339	0.92229	9.6036	6	0	Median	1.3696	1.4992	39.068	7	2	Median	2972300000	1463000000	1509300000	257310000	116350000	140960000	501630000	246120000	255520000	1166600000	633270000	533280000	1046800000	467260000	579550000	52471	1484	49416	316782;316783;316784;316785;316786;316787;316788;316789;316790;316791;316792;316793;316794;316795;316796;316797;316798;316799;316800;316801;316802;316803	426373;426374;426375;426376;426377;426378;426379;426380;426381;426382;426383;426384;426385;426386;426387;426388;426389;426390;426391;426392;426393;426394;426395;426396;426397;426398;426399;426400;426401;426402;426403	426386			27	
TVFDEAIR	0	Unmodified	949.4869	0.48689592	2045	P63000;P15153;P60763	RAC1;RAC2;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	6.02	4	1					1	1		2	1	1	3	42.48	38.614	2	0.00028267	33174	160511_QHF_FH_JSI12i_2	107.9	70.875			1.0623	1.0313	23.857	6	3	Median	1.4878	1.2547	12.769	2	2	Median	0.75114	0.89528	NaN	1	0	Median	0.94046	0.92774	NaN	1	0	Median	0.92972	0.99663	39.854	2	1	Median	563170000	300810000	262350000	75453000	33231000	42223000	188470000	107360000	81106000	178200000	96215000	81988000	121050000	64009000	57038000	52472	2045	49417	316804;316805;316806;316807;316808;316809;316810	426404;426405;426406;426407;426408;426409;426410	426405			7	
TVFEALQAPACHENLVK	1	Unmodified	1925.9669	0.96693232	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	60.878	60.74	3	3.1147E-08	52339	160511_QHF_FH_JSI12i_3	130.39	115.7			1.6491	1.6163	11.245	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8305	1.7501	NaN	1	1	Median	1.4857	1.4928	NaN	1	0	Median	175150000	67347000	107800000	0	0	0	0	0	0	81100000	27468000	53632000	94052000	39879000	54172000	52473	635	49418	316811;316812	426411;426412;426413	426412			3	
TVFEALQAPACHENMVK	1	Unmodified	1943.9234	0.92335294	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	57.064	56.465	3	1.9532E-06	49989	160511_QHF_FH_JSI11i_3	98.227	87.853			1.0305	1.2397	19.828	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0305	1.2767	NaN	1	0	Median	1.0631	1.0207	27.498	2	0	Median	1.1514	1.212	19.213	2	0	Median	478820000	239030000	239790000	0	0	0	78162000	34398000	43764000	206630000	110990000	95643000	194020000	93638000	100380000	52474	726	49419	316813;316814;316815;316816;316817	426414;426415;426416;426417;426418;426419	426414			6	
TVFFESLER	0	Unmodified	1126.5659	0.56587452	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		64.992	64.992	2	0.0028657	57828	160511_QHF_FH_JSI11i_3	62.823	35.298			1.0829	1.0009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0829	1.0009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90121000	39254000	50867000	0	0	0	0	0	0	90121000	39254000	50867000	0	0	0	52475	5	49420	316818	426420	426420			1	
TVFFWAPIMK	1	Unmodified	1238.6522	0.65218711	705	O95563	MPC2	Mitochondrial pyruvate carrier 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	97.271	93.284	2	7.6891E-20	83793	160511_QHF_FH_JSI10i_3	182.39	144.83			1.0303	1.1014	17.749	7	0	Median	1.4185	1.1812	21.24	2	0	Median	1.0046	1.1501	NaN	1	0	Median	0.99145	0.92199	25.275	2	0	Median	0.97775	1.0284	9.6975	2	0	Median	2241400000	1093200000	1148100000	508010000	195010000	313010000	375090000	194570000	180520000	739470000	397520000	341950000	618780000	306140000	312650000	52476	705	49421	316819;316820;316821;316822;316823;316824;316825	426421;426422;426423;426424;426425;426426;426427;426428;426429;426430;426431;426432	426424			11	
TVFFWAPIMK	1	Oxidation (M)	1254.6471	0.64710173	705	O95563	MPC2	Mitochondrial pyruvate carrier 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	88.085	82.932	2	1.8889E-10	42816	160513_QHF_FH_JSI11Kac_6	139.19	103.24			0.91483	0.98056	60.185	7	5	Median	1.5001	1.2226	36.981	2	2	Median	0.8383	0.99236	NaN	1	1	Median	2.0481	1.9587	112.3	2	2	Median	0.81784	0.85748	18.967	2	0	Median	569240000	229730000	339510000	47544000	22219000	25325000	78519000	38533000	39986000	273630000	64034000	209600000	169540000	104940000	64597000	52477	705	49421	316826;316827;316828;316829;316830;316831;316832	426433;426434;426435;426436;426437;426438;426439	426434		245	7	
TVFGVEPDLTR	0	Unmodified	1232.6401	0.6401021	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5	5.2		3					1			1	1		2	63.958	60.51	2	0.00011118	51980	160511_QHF_FH_JSI12i_2	85.355	53.594			1.0329	1.1293	10.843	4	1	Median	1.458	1.2826	NaN	1	1	Median	0.83818	1.0279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0329	1.1293	10.245	2	0	Median	432690000	213890000	218800000	127130000	54329000	72804000	131400000	74643000	56759000	0	0	0	174150000	84917000	89234000	52478	4160	49422	316833;316834;316835;316836	426440;426441;426442;426443	426440			4	
TVFHEEFIHYLK	1	Unmodified	1561.7929	0.79291434	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		2	2						4	1	1	3	3	66.878	62.169	4	1.5204E-11	53275	160511_QHF_FH_JSI12i_3	148.18	134.76			0.92116	0.97452	22.312	8	2	Median	1.5162	1.2327	NaN	1	1	Median	0.79745	0.96655	NaN	1	0	Median	1.1204	1.0504	30.062	3	1	Plateau	0.89809	0.98256	15.72	3	0	Median	337800000	147170000	190630000	15643000	5850000	9793200	21279000	14403000	6875800	140580000	51938000	88637000	160310000	74982000	85323000	52479	4337	49423	316837;316838;316839;316840;316841;316842;316843;316844	426444;426445;426446;426447;426448;426449;426450;426451;426452;426453;426454	426451			11	
TVFPGAVPVLPASPPPK	1	Unmodified	1672.9552	0.95522864	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			81.048	80.893	3	0.027685	73343	160511_QHF_FH_JSI10i_1	27.271	20.69			0.89216	0.99837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89216	0.99837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18437000	12634000	5803500	0	0	0	18437000	12634000	5803500	0	0	0	0	0	0	52480	5230	49424	316845	426455	426455			1	
TVFQFDVQRK	1	Unmodified	1266.6721	0.67207093	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		47.658	46.599	3	0.00053708	39026	160511_QHF_FH_JSI10i_3	61.213	45.323			0.94341	0.86558	5.1746	3	0	Median	1.1524	0.92988	NaN	1	0	Median	0.6922	0.84098	NaN	1	0	Median	0.94341	0.86558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	216210000	107240000	108970000	84453000	38456000	45997000	82791000	46354000	36437000	48968000	22434000	26534000	0	0	0	52481	387	49425	316846;316847;316848	426456;426457;426458	426457			3	
TVFSGSVSIPSITK	1	Unmodified	1421.7766	0.77659558	2983	Q5VT25	CDC42BPA	Serine/threonine-protein kinase MRCK alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.497	73.203	2	2.5915E-05	63513	160511_QHF_FH_JSI12i_3	82.171	63.859			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52482	2983	49426	316849	426459	426459			1	
TVFSPTLPAAR	0	Unmodified	1158.6397	0.63970816	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	56.406	55.462	2	4.5621E-05	47599	160511_QHF_FH_JSI12i_3	113.62	82.548			0.99431	0.97854	10.291	7	1	Median	1.1827	0.9748	3.6576	2	1	Median	0.7676	0.90373	11.248	2	0	Median	1.1123	1.025	NaN	1	0	Median	0.83552	0.88416	17.052	2	0	Median	801290000	421610000	379670000	130840000	59838000	71006000	235750000	135130000	100620000	149870000	73441000	76425000	284830000	153210000	131620000	52483	3250	49427	316850;316851;316852;316853;316854;316855;316856	426460;426461;426462;426463;426464;426465;426466;426467;426468	426468			9	
TVFVGNHPVSETEAYIAQR	0	Unmodified	2117.0542	0.054167421	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.794	58.794	3	1.1646E-06	52166	160511_QHF_FH_JSI11i_3	95.666	81.507			0.94416	0.8893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94416	0.8893	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105840000	54534000	51306000	0	0	0	0	0	0	105840000	54534000	51306000	0	0	0	52484	3585	49428	316857	426469;426470	426470			2	
TVGALQVLGTEAQSSLLK	1	Unmodified	1814.0149	0.014928368	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.774	5	8	8							4	6	6	5	92.361	91.916	2;3	1.9762E-53	81761	160511_QHF_FH_JSI11i_3	273.3	259.04			1.0838	0.99874	19.772	21	1	Median	1.1084	0.97844	5.3206	4	0	Linear	0.87031	1.0176	16.187	6	0	Median	1.1157	1.0693	17.834	6	1	Median	0.72691	0.81804	30.669	5	0	Median	4053200000	2073300000	1979800000	414710000	221100000	193610000	806940000	421590000	385350000	1350200000	647970000	702230000	1481300000	782690000	698640000	52485	2094	49429	316858;316859;316860;316861;316862;316863;316864;316865;316866;316867;316868;316869;316870;316871;316872;316873;316874;316875;316876;316877;316878	426471;426472;426473;426474;426475;426476;426477;426478;426479;426480;426481;426482;426483;426484;426485;426486;426487;426488;426489;426490;426491;426492;426493;426494;426495;426496;426497;426498;426499;426500;426501;426502;426503;426504;426505;426506;426507;426508;426509;426510;426511;426512;426513;426514;426515;426516;426517;426518;426519;426520;426521;426522;426523;426524;426525;426526;426527;426528;426529;426530;426531;426532;426533;426534;426535	426476			65	
TVGATALPR	0	Unmodified	884.50797	0.50796571	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.49	4	4	1			1	3	4	1	4	4	5	5	29.819	24.878	2	9.0679E-07	20906	160511_QHF_FH_JSI11i_2	135.83	83.147			0.86864	0.90477	23.551	18	0	Median	1.0927	0.93059	12.142	4	0	Median	0.79441	0.94308	8.5535	4	0	Median	0.87658	0.87078	23.441	5	0	Median	0.82964	0.90883	38.089	5	0	Median	6753700000	3524700000	3229000000	1273900000	625960000	647950000	1491000000	816320000	674720000	2482100000	1243200000	1239000000	1506600000	839270000	667320000	52486	1721	49430	316879;316880;316881;316882;316883;316884;316885;316886;316887;316888;316889;316890;316891;316892;316893;316894;316895;316896	426536;426537;426538;426539;426540;426541;426542;426543;426544;426545;426546;426547;426548;426549;426550;426551;426552;426553;426554;426555;426556;426557;426558;426559;426560	426552			25	
TVGEIMWGYK	1	Unmodified	1182.5743	0.57433072	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.205	62.293	2	0.00074291	53568	160511_QHF_FH_JSI12i_2	84.213	63.883			1.0728	1.1396	17.663	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2731	1.2912	NaN	1	1	Median	0.904	1.0058	NaN	1	1	Median	284480000	157390000	127100000	0	0	0	0	0	0	178550000	100070000	78475000	105930000	57314000	48620000	52487	3749	49431	316897;316898	426561;426562	426561			2	
TVGFGTNNSEHITYLEHNPYEK	1	Unmodified	2549.1823	0.18228106	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	3	3	3	56.864	56.228	3;4	7.5049E-59	49594	160511_QHF_FH_JSI11i_3	223.97	205.2			1.1143	1.1279	10.828	10	2	Median	1.3567	1.1787	7.163	2	0	Median	0.89659	1.1013	10.941	3	1	Plateau	1.0655	1.0264	8.1583	3	0	Plateau	0.90539	0.98203	5.9808	2	1	Median	1697000000	815390000	881580000	164610000	61353000	103260000	275040000	124110000	150920000	794430000	396060000	398380000	462890000	233860000	229020000	52488	4271	49432	316899;316900;316901;316902;316903;316904;316905;316906;316907;316908;316909	426563;426564;426565;426566;426567;426568;426569;426570;426571;426572;426573;426574;426575;426576;426577;426578;426579	426563			17	
TVGFGTNNSEHITYLEHNPYEKFSK	2	Acetyl (K)	2953.3883	0.38825109	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.114	66.79	4	6.2684E-06	36401	160513_QHF_FH_JSI11Kac_6	103.75	87.125			0.67439	0.65217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67439	0.65217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22813000	20694000	2119300	0	0	0	0	0	0	22813000	20694000	2119300	0	0	0	52489	4271	49433	316910	426580	426580	3094		1	
TVGFNHLTLGHNQR	0	Unmodified	1592.8172	0.81717203	4963	Q9NRR4	DROSHA	Ribonuclease 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	74.116	64.718	3	0.053904	35138	160513_QHF_FH_JSI11Kac_6	25.322	7.656			0.25656	0.25751	42.818	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19847	0.19024	NaN	1	1	Median	0.33166	0.34857	NaN	1	1	Median	182400000	157670000	24725000	0	0	0	0	0	0	111440000	96691000	14749000	70956000	60980000	9976000	52490	4963	49434	316911;316912	426581;426582	426581			2	
TVGIDDLTGEPLIQREDDKPETVIK	2	Unmodified	2780.4444	0.44436899	5333	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		74.104	74.104	4	0.00010708	66118	160511_QHF_FH_JSI11i_3	49.638	46.86			1.2478	1.1503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2478	1.1503	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38786000	13151000	25634000	0	0	0	0	0	0	38786000	13151000	25634000	0	0	0	52491	5333	49435	316913	426583	426583			1	
TVGIHPTCSEEVVK	1	Unmodified	1554.7712	0.77119262	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	31.737	31.659	3	4.5819E-05	26653	160511_QHF_FH_JSI12i_3	82.55	72.197			1.1911	1.2203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1911	1.2203	NaN	1	0	Median	66394000	29075000	37319000	0	0	0	0	0	0	0	0	0	66394000	29075000	37319000	52492	4879	49436	316914	426584	426584			1	
TVGLAER	0	Unmodified	744.413	0.41300269	3197	Q709F0	ACAD11	Acyl-CoA dehydrogenase family member 11	yes	yes	0	0	0	0	By matching			By MS/MS	3	0			2							1			1	15.623	15.128	2	0.038396	11887	160511_QHF_FH_JSI12i_3	48.174	10.528			0.74909	0.67735	45.309	2	0	Median	0.60828	0.49167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92249	0.93315	NaN	1	0	Median	1085900000	540210000	545720000	29595000	17439000	12156000	0	0	0	0	0	0	1056300000	522770000	533560000	52493	3197	49437	316915;316916	426585	426585			1	
TVGLFLQGGK	1	Unmodified	1018.5811	0.58113065	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	55.588	54.752	2	8.0354E-05	47109	160511_QHF_FH_JSI12i_3	103.83	87.293			1.1509	1.0909	7.3661	4	0	Median	1.299	1.0749	NaN	1	0	Median	0.84698	0.96574	NaN	1	0	Median	1.1516	1.1071	NaN	1	0	Median	1.1502	1.145	NaN	1	0	Median	2067700000	869920000	1197800000	318620000	130730000	187890000	382890000	177430000	205460000	463400000	196050000	267350000	902810000	365710000	537100000	52494	1558	49438	316917;316918;316919;316920	426586;426587;426588;426589;426590;426591;426592;426593;426594;426595	426595			10	
TVGLGDAISAEGLFYSEVHPHY	0	Unmodified	2361.1277	0.12772629	4381	Q9BRR6	ADPGK	ADP-dependent glucokinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	99.506	99.355	3	1.0886E-05	87253	160511_QHF_FH_JSI11i_2	57.338	54.497			1.036	1.0725	17.597	4	1	Median	0.96571	0.83004	NaN	1	0	Median	0.80007	0.9855	NaN	1	1	Median	1.1214	1.1671	NaN	1	0	Median	1.1115	1.2214	NaN	1	0	Median	72964000	37754000	35210000	20051000	9879700	10171000	14476000	9349800	5126100	22579000	9592100	12986000	15859000	8932700	6926100	52495	4381	49439	316921;316922;316923;316924;316925;316926	426596;426597;426598;426599;426600;426601;426602	426600			7	
TVGMLSNMIAFYDMAR	0	Unmodified	1818.8467	0.84668253	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	93.684	86.723	3	0.00028575	50222	160513_QHF_FH_JSI10Kac_6	109.07	99.793			1.018	1.1691	4.5924	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0173	1.1661	0.4599	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0012	1.0772	NaN	1	0	Median	189180000	95713000	93463000	0	0	0	166030000	81352000	84679000	0	0	0	23145000	14361000	8784600	52496	1479	49440	316927;316928;316929;316930	426603;426604;426605;426606	426605			4	
TVGQLYK	1	Unmodified	807.44905	0.44905385	1436;1437;1445;3263	P35579;P35580;Q7Z406;P35749	MYH9;MYH10;MYH14;MYH11	Myosin-9;Myosin-10;Myosin-14;Myosin-11	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.4	4	3	1				3	3		1	4	4	5	24.424	20.247	2	0.011101	12103	160513_QHF_FH_JSI11Kac_5	81.297	20.509			0.85011	0.92726	19.376	14	1	Median	0.98747	0.81034	NaN	1	0	Median	0.82989	0.9881	22.117	4	0	Median	0.91898	0.90473	22.673	4	0	Median	0.84882	0.91359	12.605	5	1	Median	3167700000	1700000000	1467700000	90129000	42943000	47186000	777820000	422380000	355440000	1255500000	654660000	600870000	1044200000	580010000	464220000	52497	1436;1437;3263;1445	49441	316931;316932;316933;316934;316935;316936;316937;316938;316939;316940;316941;316942;316943;316944	426607;426608;426609;426610;426611;426612;426613;426614	426611			8	
TVGQLYKEQLAK	2	Acetyl (K)	1418.7769	0.77692993	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3			2	2	2	61.345	50.557	2	6.9682E-08	27568	160513_QHF_FH_JSI11Kac_5	112.13	86.007			0.68949	0.72918	68.453	4	0	Median	NaN	NaN	NaN	0	0	Median	0.96495	1.1096	2.5854	2	0	Median	0.37089	0.36499	41.082	2	0	Median	NaN	NaN	NaN	0	0	Median	18975000	13667000	5307700	0	0	0	4167000	1923800	2243100	12531000	9466800	3064500	2276300	2276300	0	52498	1436	49442	316945;316946;316947;316948;316949;316950	426615;426616;426617;426618;426619	426617	1415		4	
TVGTPIASVPGSTNTGTVPGSEK	1	Unmodified	2156.0961	0.096091815	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.039	54.38	2	7.8767E-123	49560	160511_QHF_FH_JSI12i_1	280.7	254.57			0.9289	1.0024	9.4393	4	0	Median	1.3541	1.0943	NaN	1	0	Median	0.85924	1.0015	NaN	1	0	Median	0.90128	0.87104	NaN	1	0	Median	0.95738	1.0033	NaN	1	0	Median	855080000	430230000	424850000	232460000	109510000	122960000	210790000	112550000	98241000	212000000	101520000	110470000	199830000	106650000	93180000	52499	4272	49443	316951;316952;316953;316954	426620;426621;426622;426623;426624;426625;426626;426627;426628;426629	426624			10	
TVGTQDTPYMVNGQEIPADTLGQFPSIK	1	Unmodified	3006.4645	0.4644525	2269	Q08378	GOLGA3	Golgin subfamily A member 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			95.22	95.234	3	0.019058	86446	160511_QHF_FH_JSI10i_1	26.187	23.555			0.80843	0.95691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80843	0.95691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16097000	11657000	4440700	0	0	0	16097000	11657000	4440700	0	0	0	0	0	0	52500	2269	49444	316955	426630	426630			1	
TVGVEPAADGK	1	Unmodified	1042.5295	0.52948901	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	5.54	4	4	4		3	4	3			4	5	6	7	20.65	16.641	2	1.0089E-19	5586	160513_QHF_FH_JSI9Kac_3	163.38	108.83			0.88934	0.9773	26.256	21	2	Median	1.3403	1.1382	7.3757	4	0	Median	0.86315	1.0259	32.69	5	1	Median	0.95423	0.94533	26.408	6	0	Median	0.76206	0.81752	11.135	6	1	Median	18519000000	8635600000	9882900000	4752100000	1828500000	2923600000	4836900000	2675500000	2161500000	4735600000	2212200000	2523400000	4193800000	1919400000	2274400000	52501	1592	49445	316956;316957;316958;316959;316960;316961;316962;316963;316964;316965;316966;316967;316968;316969;316970;316971;316972;316973;316974;316975;316976;316977	426631;426632;426633;426634;426635;426636;426637;426638;426639;426640;426641;426642;426643;426644;426645;426646;426647;426648;426649;426650;426651;426652;426653;426654;426655;426656;426657;426658;426659;426660;426661;426662;426663;426664;426665;426666;426667	426647			37	
TVGVNNPVFLLDEVDK	1	Unmodified	1757.92	0.91996535	3355	Q86WA8	LONP2	Lon protease homolog 2, peroxisomal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	2	3	2	96.673	96.435	2	1.8448E-07	84631	160511_QHF_FH_JSI11i_2	141.38	126.82			0.90602	0.88446	23.704	8	5	Median	0.89708	0.78861	NaN	1	0	Median	0.79275	0.93489	25.401	2	1	Median	0.92318	0.89825	23.291	3	2	Median	0.98523	1.1119	34.549	2	2	Median	100600000	52509000	48088000	12902000	6381800	6519800	29787000	16284000	13503000	36766000	20189000	16578000	21142000	9655100	11487000	52502	3355	49446	316978;316979;316980;316981;316982;316983;316984;316985	426668;426669;426670;426671;426672;426673;426674;426675;426676	426674			9	
TVGVQGDCR	0	Unmodified	990.45528	0.45527821	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	9.787	9.4204	2	1.032E-05	7327	160511_QHF_FH_JSI12i_1	111.39	84.225			0.66455	0.66557	12.436	4	1	Median	0.77077	0.65497	NaN	1	1	Median	0.59183	0.67633	NaN	1	0	Median	0.56824	0.5578	NaN	1	0	Median	0.74619	0.75341	NaN	1	0	Median	505270000	295530000	209730000	65841000	33124000	32717000	118310000	64253000	54054000	190780000	125630000	65151000	130340000	72531000	57811000	52503	1693	49447	316986;316987;316988;316989;316990	426677;426678;426679;426680;426681;426682	426679			6	
TVGWNVPVGYLVESGR	0	Unmodified	1731.8944	0.8944193	908	P08582	MFI2	Melanotransferrin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		90.051	90.051	2	9.3264E-05	80350	160511_QHF_FH_JSI11i_3	93.011	60.405			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52504	908	49448	316991	426683	426683			1	
TVHAGEVGSAEVVK	1	Unmodified	1381.7201	0.72014333	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							1	3	2	3	24.047	23.345	2;3	0.00032443	19388	160511_QHF_FH_JSI11i_2	63.709	54.755			1.207	1.0879	69.62	7	1	Median	1.207	1.0879	NaN	1	0	Median	0.38524	0.46064	117.21	2	1	Median	1.2268	1.2285	2.8984	2	0	Median	1.1428	1.2338	45.737	2	0	Median	396780000	183180000	213600000	46935000	21130000	25805000	81155000	37213000	43942000	153120000	70333000	82785000	115580000	54507000	61069000	52505	777	49449	316992;316993;316994;316995;316996;316997;316998;316999;317000	426684;426685;426686;426687;426688;426689;426690;426691;426692;426693	426688			10	
TVHFIVPR	0	Unmodified	967.56034	0.56033563	5483	Q9Y217	MTMR6	Myotubularin-related protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.523	39.014	3	0.0013125	31805	160511_QHF_FH_JSI9i_3	65.252	45.466			0.85863	0.84744	0.5671	2	0	Median	1.0212	0.84405	NaN	1	0	Median	0.72196	0.85085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38463000	21627000	16836000	22743000	12432000	10311000	15720000	9195200	6525200	0	0	0	0	0	0	52506	5483	49450	317001;317002	426694;426695	426695			2	
TVHNLYLFDR	0	Unmodified	1276.6564	0.65642086	5676	Q9Y5R8	TRAPPC1	Trafficking protein particle complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7.33	6.13			2						1			1	2	50.662	50.544	3	0.00067435	44645	160511_QHF_FH_JSI11i_3	48.044	44.743			0.72955	0.71673	26.855	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92023	0.86662	NaN	1	0	Median	0.57839	0.59277	NaN	1	0	Median	116440000	64173000	52266000	0	0	0	0	0	0	75127000	37845000	37282000	41313000	26328000	14984000	52507	5676	49451	317003;317004;317005	426696;426697;426698	426696			3	
TVHSVIK	1	Unmodified	782.46504	0.46503826	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			9.0558	8.4676	2	0.02122	6339	160511_QHF_FH_JSI10i_3	51.787	15.602			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52508	3301	49452	317006	426699	426699			1	
TVHTEWTQR	0	Unmodified	1156.5625	0.56252048	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0		By MS/MS	By matching		3	0			4								3	1		16.266	15.592	2;3	6.4826E-09	12636	160511_QHF_FH_JSI10i_3	149.27	141.7			1.063	0.97181	39.464	3	1	Median	NaN	NaN	NaN	0	0	Median	0.92222	1.0761	55.185	2	1	Median	1.063	0.97181	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	218350000	122140000	96207000	0	0	0	125700000	68876000	56824000	92647000	53264000	39383000	0	0	0	52509	1040	49453	317007;317008;317009;317010	426700;426701;426702	426700			3	
TVHYLPILFIDQLSNR	0	Unmodified	1928.052	0.051982576	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	3	2	2	3	92.555	84.93	2;3	7.0227E-54	48268	160513_QHF_FH_JSI10Kac_6	160.87	142.03			1.1266	1.1244	9.5136	10	4	Median	1.3151	1.1117	8.9946	3	2	Median	0.92749	1.0993	4.7905	2	0	Median	1.0217	0.96974	9.1674	2	0	Median	1.1296	1.186	2.1577	3	2	Median	5966500000	2792000000	3174600000	1046900000	431530000	615380000	1467400000	742340000	725060000	1361500000	655600000	705910000	2090700000	962510000	1128200000	52510	4153	49454	317011;317012;317013;317014;317015;317016;317017;317018;317019;317020	426703;426704;426705;426706;426707;426708;426709;426710;426711;426712;426713;426714;426715	426713			13	
TVIDSQTHYR	0	Unmodified	1218.5993	0.59929991	5600	Q9Y3Q3	TMED3	Transmembrane emp24 domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.78		7	5						2	2	3	6	3	17.047	15.317	2;3	5.1236E-12	12305	160511_QHF_FH_JSI12i_3	152.04	120.61			1.1544	1.1289	14.072	13	3	Median	1.5768	1.3588	10.326	2	0	Median	0.81966	1.0123	14.972	2	0	Median	1.1653	1.1301	10.088	6	3	Median	1.114	1.1092	14.523	3	0	Median	1018400000	492100000	526320000	124570000	52234000	72336000	163490000	91109000	72384000	424710000	200160000	224550000	305650000	148600000	157050000	52511	5600	49455	317021;317022;317023;317024;317025;317026;317027;317028;317029;317030;317031;317032;317033;317034	426716;426717;426718;426719;426720;426721;426722;426723;426724;426725;426726;426727;426728;426729;426730	426729			15	
TVIDYNGER	0	Unmodified	1065.5091	0.50908792	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.71	4	4	2			2	2	1		4	6	3	2	27.436	23.572	2	4.7633E-08	21815	160511_QHF_FH_JSI11i_2	160.88	132.66			1.0301	1.0155	14.756	11	3	Median	1.0346	0.83777	15.471	2	0	Median	0.94524	1.1456	11.91	4	2	Median	1.0342	1.0338	5.6736	3	1	Plateau	0.86552	0.95133	9.2377	2	0	Median	8190000000	4010000000	4180100000	597000000	270060000	326950000	2859600000	1482100000	1377500000	2595400000	1262000000	1333400000	2138000000	995770000	1142200000	52512	867	49456	317035;317036;317037;317038;317039;317040;317041;317042;317043;317044;317045;317046;317047;317048;317049	426731;426732;426733;426734;426735;426736;426737;426738;426739;426740;426741;426742;426743;426744;426745;426746;426747;426748	426745			18	
TVIEPMASEGLR	0	Unmodified	1301.6649	0.66493664	1168	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	52.595	51.811	2	1.5261E-05	44832	160511_QHF_FH_JSI11i_2	113.93	102.76			0.90304	0.9149	17.629	6	0	Median	1.2481	1.0533	NaN	1	0	Median	0.65284	0.77658	17.287	2	0	Median	0.90304	0.88727	10.23	2	0	Median	1.0071	1.1174	NaN	1	0	Median	700990000	348340000	352650000	93948000	30973000	62974000	214930000	126500000	88430000	250700000	116200000	134500000	141410000	74671000	66740000	52513	1168	49457	317050;317051;317052;317053;317054;317055	426749;426750;426751;426752;426753;426754;426755;426756	426754			8	
TVIESSPESPVTITEPYR	0	Unmodified	2004.0052	0.0051515425	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.898	65.29	2	6.7156E-99	59100	160511_QHF_FH_JSI10i_1	265.13	227.45			1.044	0.99377	2.9606	4	0	Linear	1.233	1.027	NaN	1	0	Median	0.904	1.0536	NaN	1	0	Median	1.0294	1.0002	NaN	1	0	Median	1.0588	1.07	NaN	1	0	Median	471350000	217680000	253670000	117290000	45680000	71606000	114930000	57985000	56941000	124390000	57479000	66910000	114750000	56539000	58211000	52514	3736	49458	317056;317057;317058;317059	426757;426758;426759;426760;426761;426762;426763;426764	426762			8	
TVIFVATGEGK	1	Unmodified	1120.6128	0.61282471	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.68	6.27	4	4			1	3	3	4	3	4	7	5	6	56.112	49.555	2	5.9728E-13	43651	160511_QHF_FH_JSI10i_2	145.25	115.08			1.0145	1.0341	10.027	21	0	Median	1.0852	0.92613	5.7282	4	0	Median	0.84153	1.0119	7.8143	6	0	Median	1.0779	1.0553	6.798	5	0	Median	1.0535	1.1414	9.1035	6	0	Median	1843300000	965030000	878270000	303850000	153710000	150140000	544280000	300530000	243750000	574560000	299600000	274970000	420610000	211190000	209420000	52515	677	49459	317060;317061;317062;317063;317064;317065;317066;317067;317068;317069;317070;317071;317072;317073;317074;317075;317076;317077;317078;317079;317080;317081	426765;426766;426767;426768;426769;426770;426771;426772;426773;426774;426775;426776;426777;426778;426779;426780;426781;426782;426783;426784;426785;426786;426787;426788;426789;426790	426787			24	
TVIGCSGFHGDCLTLTK	1	Unmodified	1864.8812	0.88115378	1177	P20618	PSMB1	Proteasome subunit beta type-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	1	4	3	58.475	57.543	2;3	3.2803E-24	50996	160511_QHF_FH_JSI11i_3	141.38	125.24			1.239	1.2651	29.241	5	3	Median	2.064	1.7003	NaN	1	1	Median	0.94913	1.1076	NaN	1	1	Median	0.98362	0.91667	NaN	1	1	Median	1.4379	1.5281	26.708	2	0	Median	935440000	424040000	511390000	17563000	5029500	12534000	62721000	36448000	26273000	332870000	172410000	160460000	522290000	210160000	312130000	52516	1177	49460	317082;317083;317084;317085;317086;317087;317088;317089;317090	426791;426792;426793;426794;426795;426796;426797;426798;426799;426800;426801	426793			11	
TVIGELPPASSGSALAANVCK	1	Unmodified	2041.0514	0.051390229	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									1	3	2	3	70.908	70.384	2;3	1.3933E-18	63915	160511_QHF_FH_JSI11i_1	154.65	140.64			1.0045	0.9701	22.284	7	4	Median	1.2026	0.9701	NaN	1	1	Median	1.0045	1.1426	NaN	1	1	Median	0.82483	0.79395	7.226	2	0	Median	1.2788	1.2614	20.186	3	2	Median	309350000	142740000	166610000	12374000	4514200	7860000	21107000	10107000	11000000	135130000	67288000	67839000	140740000	60830000	79908000	52517	3343	49461	317091;317092;317093;317094;317095;317096;317097;317098;317099	426802;426803;426804;426805;426806;426807;426808;426809;426810;426811	426802			10	
TVIIDHGSGFLK	1	Unmodified	1285.703	0.7030367	4731	Q9H568	ACTL8	Actin-like protein 8	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	49.948	49.83	3	5.3961E-06	44030	160511_QHF_FH_JSI11i_3	110.31	79.417			1.3983	1.3877	8.9617	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.356	1.3025	NaN	1	0	Median	1.4418	1.4785	NaN	1	0	Median	92154000	45092000	47062000	0	0	0	0	0	0	55133000	22812000	32320000	37022000	22280000	14742000	52518	4731	49462	317100;317101	426812;426813	426812			2	
TVIIEQSWGSPK	1	Unmodified	1343.7085	0.70851601	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.56	6.31	4	5	4			2	5	8	4	7	10	7	8	61.881	55.569	2;3	7.4286E-65	47604	160511_QHF_FH_JSI12i_2	264.37	205.39			1.0606	1.0366	31.994	31	3	Median	1.1399	0.95434	10.205	6	1	Median	0.7987	0.93869	52.98	10	1	Median	1.1321	1.1218	12.387	7	0	Median	1.0452	1.1242	13.755	8	1	Median	16139000000	8073700000	8064800000	2605400000	1288100000	1317300000	4187300000	2298800000	1888500000	4262400000	2222800000	2039600000	5083500000	2264000000	2819500000	52519	980	49463	317102;317103;317104;317105;317106;317107;317108;317109;317110;317111;317112;317113;317114;317115;317116;317117;317118;317119;317120;317121;317122;317123;317124;317125;317126;317127;317128;317129;317130;317131;317132;317133	426814;426815;426816;426817;426818;426819;426820;426821;426822;426823;426824;426825;426826;426827;426828;426829;426830;426831;426832;426833;426834;426835;426836;426837;426838;426839;426840;426841;426842;426843;426844;426845;426846;426847;426848;426849;426850;426851;426852;426853;426854;426855;426856;426857;426858;426859;426860;426861;426862;426863;426864;426865;426866;426867;426868;426869;426870;426871;426872;426873;426874;426875;426876;426877;426878;426879;426880;426881;426882;426883;426884;426885;426886;426887;426888;426889;426890;426891;426892;426893;426894;426895;426896;426897;426898;426899;426900;426901	426825			88	
TVINFTMPNTIK	1	Unmodified	1377.7326	0.73262227	4096	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	75.576	74.993	2	4.3667E-05	66586	160511_QHF_FH_JSI10i_2	101.3	72.208			0.91498	0.92617	15.825	5	1	Median	NaN	NaN	NaN	0	0	Median	0.73137	0.89454	NaN	1	0	Median	1.0727	1.0489	17.593	2	0	Median	0.90327	0.95594	22.459	2	1	Median	198560000	107720000	90835000	0	0	0	38797000	19593000	19204000	94668000	50579000	44089000	65093000	37552000	27541000	52520	4096	49464	317134;317135;317136;317137;317138	426902;426903;426904;426905;426906;426907	426906			6	
TVINYDVAR	0	Unmodified	1049.5506	0.55055881	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	38.655	37.702	2	0.00092088	32271	160511_QHF_FH_JSI11i_2	71.614	40.54			1.0528	0.85816	15.751	4	2	Linear	0.91914	0.76849	NaN	1	0	Median	0.67974	0.82066	NaN	1	1	Median	1.0839	1.1035	NaN	1	0	Median	0.81237	0.89737	NaN	1	1	Median	285340000	152110000	133230000	62594000	29473000	33121000	55861000	35518000	20344000	89781000	44537000	45244000	77104000	42578000	34526000	52521	3377	49465	317139;317140;317141;317142;317143	426908;426909;426910;426911;426912;426913;426914	426912			7	
TVIPGMPTVIPPGLTR	0	Unmodified	1647.9382	0.93819837	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.78	6	7	5							3	5	5	5	95.11	94.824	2;3	4.4692E-06	83250	160511_QHF_FH_JSI11i_2	87.647	83.476			1.1084	1.0647	13.111	18	3	Median	1.2239	1.0471	16.455	3	1	Plateau	0.86564	1.0253	13.372	5	1	Median	1.1455	0.95559	9.6713	5	0	Linear	1.0861	1.1494	15.666	5	1	Median	792080000	393600000	398480000	148760000	67273000	81483000	200770000	113040000	87727000	278890000	134160000	144730000	163670000	79134000	84534000	52522	2689	49466	317144;317145;317146;317147;317148;317149;317150;317151;317152;317153;317154;317155;317156;317157;317158;317159;317160;317161	426915;426916;426917;426918;426919;426920;426921;426922;426923;426924;426925;426926;426927;426928;426929;426930;426931;426932;426933;426934;426935;426936;426937;426938;426939;426940;426941;426942;426943;426944;426945;426946;426947;426948;426949;426950;426951;426952;426953;426954;426955;426956;426957	426945			43	
TVIQSLTMYPR	0	Unmodified	1307.6908	0.69075746	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	60.152	59.651	2	3.0845E-06	51474	160511_QHF_FH_JSI12i_3	110.53	52.935			1.0272	1.1433	17.845	5	3	Median	NaN	NaN	NaN	0	0	Median	0.85016	1.052	11.778	2	2	Median	1.2158	1.178	17.087	2	1	Median	1.5449	1.5011	NaN	1	0	Median	259720000	131320000	128390000	0	0	0	87235000	48848000	38387000	128440000	61403000	67038000	44041000	21072000	22969000	52523	3888	49467	317162;317163;317164;317165;317166;317167;317168	426958;426959;426960;426961;426962;426963;426964	426964			7	
TVISPDPNLRIDEVAVPVHVAK	1	Unmodified	2368.3114	0.31144474	207	O14802	POLR3A	DNA-directed RNA polymerase III subunit RPC1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	77.669	77.535	4	4.0633E-08	67322	160511_QHF_FH_JSI12i_3	90.22	82.86			1.4149	1.3758	8.613	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5817	1.4622	NaN	1	0	Median	1.2657	1.2945	NaN	1	0	Median	111850000	42467000	69384000	0	0	0	0	0	0	44139000	15221000	28918000	67712000	27246000	40466000	52524	207	49468	317169;317170	426965;426966;426967	426967			3	
TVISQSLSK	1	Unmodified	961.54441	0.5444108	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.48	5	4	2				2			3	4	3	3	27.747	25.652	2	2.756E-05	22901	160511_QHF_FH_JSI12i_1	103.55	70.706			0.80698	0.85639	34.812	13	6	Median	0.85272	0.73643	11.533	3	3	Median	0.76899	0.89202	50.028	4	2	Median	1.0162	1.0063	44.665	3	1	Median	0.71264	0.77675	23.925	3	0	Plateau	1333900000	742480000	591390000	333180000	178400000	154780000	318100000	192880000	125220000	359440000	195650000	163800000	323140000	175550000	147590000	52525	1479	49469	317171;317172;317173;317174;317175;317176;317177;317178;317179;317180;317181;317182;317183	426968;426969;426970;426971;426972;426973;426974;426975;426976;426977;426978;426979;426980;426981;426982;426983;426984	426972			17	
TVITNEYMK	1	Unmodified	1097.5427	0.54269624	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	37.69	36.969	2	4.4855E-05	33602	160511_QHF_FH_JSI12i_1	98.582	33.117			1.0219	1.0575	22.686	7	1	Median	1.013	0.87532	NaN	1	0	Median	0.85031	1.0108	6.3989	2	0	Median	1.1166	1.1119	12.157	2	0	Median	1.2986	1.3683	35.832	2	1	Median	589610000	311090000	278520000	43034000	19722000	23313000	174280000	97584000	76700000	197520000	103230000	94289000	174770000	90554000	84219000	52526	2145	49470	317184;317185;317186;317187;317188;317189;317190;317191	426985;426986;426987;426988;426989;426990;426991;426992;426993;426994;426995;426996	426990			11	
TVITPDPNLSIDQVGVPR	0	Unmodified	1920.0316	0.031641064	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	80.926	80.384	2;3	4.2602E-08	73300	160511_QHF_FH_JSI12i_1	122.64	85.792			1.0513	1.1437	11.944	6	3	Plateau	1.281	1.0581	22.223	2	0	Median	0.99756	1.1331	NaN	1	1	Median	1.1014	1.0564	NaN	1	0	Median	0.95431	0.97266	6.9185	2	2	Median	154390000	76739000	77651000	45190000	24448000	20742000	25067000	10408000	14659000	31539000	15666000	15873000	52594000	26217000	26376000	52527	1251	49471	317192;317193;317194;317195;317196;317197	426997;426998;426999;427000;427001;427002;427003;427004;427005	427001			9	
TVIVAALDGTFQR	0	Unmodified	1389.7616	0.76161421	809	P04183	TK1	Thymidine kinase, cytosolic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	1	3	74.695	74.176	2;3	6.1585E-05	65910	160511_QHF_FH_JSI10i_2	76.522	64.309			1.1278	1.3265	56.83	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0733	1.3265	NaN	1	0	Median	1.1278	1.0753	NaN	1	0	Median	0.86071	0.85973	72.347	3	1	Plateau	106010000	50045000	55963000	0	0	0	9749800	4686100	5063700	29633000	13528000	16106000	66625000	31831000	34794000	52528	809	49472	317198;317199;317200;317201;317202	427006;427007;427008;427009;427010;427011	427008			4	
TVIVHGFTLGEK	1	Unmodified	1299.7187	0.71868677	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.93	6.61		6	8					3	10	9	7	6	5	59.702	54.853	2;3	1.5057E-06	48170	160511_QHF_FH_JSI11i_3	102.87	93.217			1.0638	0.98093	34.448	24	13	Median	1.0715	0.88381	35.982	8	5	Median	0.7854	0.93209	35.094	6	2	Median	1.0216	0.96077	25.634	6	3	Median	1.2824	1.3935	22.379	4	3	Median	4758700000	2214600000	2544100000	787790000	397500000	390290000	798480000	427130000	371350000	1148000000	568590000	579390000	2024500000	821390000	1203100000	52529	4983	49473	317203;317204;317205;317206;317207;317208;317209;317210;317211;317212;317213;317214;317215;317216;317217;317218;317219;317220;317221;317222;317223;317224;317225;317226;317227;317228;317229	427012;427013;427014;427015;427016;427017;427018;427019;427020;427021;427022;427023;427024;427025;427026;427027;427028;427029;427030;427031;427032;427033;427034;427035;427036;427037;427038;427039;427040;427041	427013			30	
TVIVKGPR	1	Acetyl (K)	910.56	0.56000128	1398	P32969	RPL9	60S ribosomal protein L9	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	2	2	38.28	28.558	2	0.0081184	16424	160513_QHF_FH_JSI11Kac_5	77.674	39.436			0.83414	0.96519	30.017	7	0	Median	1.1833	0.99819	NaN	1	0	Median	0.8175	0.97343	1.2014	2	0	Median	0.57069	0.55799	23.781	2	0	Median	0.9212	1.0131	7.6574	2	0	Median	52313000	28904000	23409000	3929500	1843400	2086200	14702000	7271400	7430200	18564000	11912000	6652500	15117000	7877200	7240100	52530	1398	49474	317230;317231;317232;317233;317234;317235;317236	427042;427043;427044;427045;427046;427047;427048;427049	427046	1359		8	
TVIVNMVDVAK	1	Unmodified	1187.6584	0.6583947	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.36	4	4	2			1	3	3	1	4	6	5	3	68.188	63.869	2	4.643E-07	58006	160511_QHF_FH_JSI10i_1	116.23	75.246			0.91764	1.0074	28.649	16	3	Median	0.92727	0.76801	37.145	4	0	Median	0.81804	1.01	18.854	5	1	Median	0.97573	0.96376	8.6166	4	1	Median	0.9855	1.0678	31.112	3	1	Plateau	1146100000	581630000	564480000	217770000	114630000	103140000	310480000	187150000	123330000	349180000	158300000	190880000	268680000	121540000	147130000	52531	1839	49475	317237;317238;317239;317240;317241;317242;317243;317244;317245;317246;317247;317248;317249;317250;317251;317252;317253;317254	427050;427051;427052;427053;427054;427055;427056;427057;427058;427059;427060;427061;427062;427063;427064;427065;427066;427067;427068;427069;427070;427071;427072;427073;427074;427075	427058			26	
TVIVNMVDVAK	1	Oxidation (M)	1203.6533	0.65330932	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	1	0		By MS/MS			14	0.707						1	2	1			4			54.549	44.388	2	0.0073218	23771	160513_QHF_FH_JSI10Kac_3	66.435	36.961			0.71544	0.76755	13.203	3	1	Median	NaN	NaN	NaN	0	0	Median	0.71544	0.76755	13.203	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7143600	4364900	2778700	0	0	0	7143600	4364900	2778700	0	0	0	0	0	0	52532	1839	49475	317255;317256;317257;317258	427076;427077;427078	427078		1514	3	
TVIVTGANTGIGK	1	Unmodified	1229.698	0.69795133	3599	Q8NBN7	RDH13	Retinol dehydrogenase 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.78	3	6					2			1	4	3	3	43.508	40.737	2	0.00032337	22708	160513_QHF_FH_JSI10Kac_4	83	44.707			0.89556	0.99995	31.088	10	4	Median	0.80844	0.68655	NaN	1	0	Median	0.88663	1.035	29.923	3	1	Median	0.88217	0.85032	23.587	3	1	Plateau	0.98849	1.027	36.094	3	2	Median	353550000	183870000	169680000	29701000	16763000	12938000	82742000	51165000	31577000	120290000	56947000	63346000	120810000	58997000	61816000	52533	3599	49476	317259;317260;317261;317262;317263;317264;317265;317266;317267;317268;317269	427079;427080;427081;427082;427083;427084;427085;427086;427087;427088;427089;427090	427083			9	
TVIYWLAEVK	1	Unmodified	1220.6805	0.68051035	1713	P50583	NUDT2	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	4	4	3	3	87.123	84.123	2	2.728E-09	77096	160511_QHF_FH_JSI11i_2	127.4	106.77			0.93544	1.0468	23.405	13	5	Median	0.97259	0.85044	19.158	3	1	Median	0.9339	1.1081	7.1274	4	2	Median	0.84149	0.79139	26.64	3	1	Plateau	1.02	1.0764	21.013	3	1	Median	1847100000	922420000	924660000	361940000	161630000	200310000	629700000	315440000	314270000	480240000	271100000	209140000	375200000	174250000	200940000	52534	1713	49477	317270;317271;317272;317273;317274;317275;317276;317277;317278;317279;317280;317281;317282;317283	427091;427092;427093;427094;427095;427096;427097;427098;427099;427100;427101;427102;427103;427104;427105;427106;427107;427108	427102			18	
TVKDAVQK	2	Acetyl (K)	929.5182	0.51819605	4772	Q9H7Z6	KAT8	Histone acetyltransferase KAT8	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	20.105	13.07	2	0.022047	8598	160513_QHF_FH_JSI12Kac_3	65.465	10.689			3.9334	4.201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.9334	4.201	NaN	1	1	Median	11970000	3721200	8248900	0	0	0	0	0	0	0	0	0	11970000	3721200	8248900	52535	4772	49478	317284	427109	427109	3224;3226		1	
TVKGGFSETRIEK	2	Unmodified	1450.778	0.77799256	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			102	101.85	3	0.0027015	84516	160511_QHF_FH_JSI10i_3	40.725	10.789			1.0856	1.2614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0856	1.2614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183030000	84469000	98562000	0	0	0	183030000	84469000	98562000	0	0	0	0	0	0	52536	4719	49479	317285	427110	427110			1	
TVLASDTHQR	0	Unmodified	1126.5731	0.57308516	4766	Q9H7D7	WDR26	WD repeat-containing protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	8.8244	8.6092	2	6.2473E-11	6325	160511_QHF_FH_JSI11i_3	145.72	119.83			1.6159	1.5121	61.036	4	1	Median	2.1656	1.9002	NaN	1	0	Median	2.2591	2.7466	NaN	1	0	Median	0.72946	0.66727	NaN	1	0	Median	1.2057	1.2033	NaN	1	1	Median	166820000	78847000	87971000	28177000	8722200	19455000	37442000	14452000	22989000	47179000	28204000	18975000	54020000	27468000	26552000	52537	4766	49480	317286;317287;317288;317289;317290	427111;427112;427113;427114;427115;427116	427112			6	
TVLCGTCGQPADK	1	Unmodified	1405.633	0.63298458	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	22.618	21.949	2	6.7986E-07	19072	160511_QHF_FH_JSI10i_1	132.03	109.25			1.0782	1.1978	20.431	5	2	Linear	1.048	0.85455	14.789	2	2	Median	0.79062	0.95551	NaN	1	0	Median	1.0782	1.0447	NaN	1	0	Median	1.2706	1.3538	NaN	1	0	Median	422120000	227850000	194270000	139470000	92599000	46875000	79904000	46524000	33379000	97054000	43738000	53316000	105690000	44992000	60695000	52538	791	49481	317291;317292;317293;317294;317295	427117;427118;427119;427120;427121;427122;427123;427124	427122			8	
TVLDLAVVLFETATLR	0	Unmodified	1760.0084	0.0083864269	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.29		8	5	6	1				49	15	38	10	6	102.64	96.969	2;3	3.2817E-40	91334	160511_QHF_FH_JSI9i_2	262.15	227.77			0.85516	0.92592	28.156	47	19	Median	1.1708	0.99969	30.831	11	4	Median	0.77212	0.90503	23.612	23	10	Median	0.89965	0.86466	31.147	8	3	Median	0.72772	0.79847	35.434	5	2	Median	8373200000	5276900000	3096400000	2456600000	1504100000	952560000	3544900000	2329900000	1215000000	482360000	268830000	213530000	1889300000	1174100000	715230000	52539	1057	49482	317296;317297;317298;317299;317300;317301;317302;317303;317304;317305;317306;317307;317308;317309;317310;317311;317312;317313;317314;317315;317316;317317;317318;317319;317320;317321;317322;317323;317324;317325;317326;317327;317328;317329;317330;317331;317332;317333;317334;317335;317336;317337;317338;317339;317340;317341;317342;317343;317344;317345;317346;317347;317348;317349;317350;317351;317352;317353;317354;317355;317356;317357;317358;317359;317360;317361;317362;317363;317364	427125;427126;427127;427128;427129;427130;427131;427132;427133;427134;427135;427136;427137;427138;427139;427140;427141;427142;427143;427144;427145;427146;427147;427148;427149;427150;427151;427152;427153;427154;427155;427156;427157;427158;427159;427160;427161;427162;427163;427164;427165;427166;427167;427168;427169;427170;427171;427172;427173;427174;427175;427176;427177;427178;427179;427180;427181;427182;427183;427184;427185;427186;427187;427188;427189;427190;427191;427192;427193;427194;427195;427196;427197;427198	427135			70	
TVLDPVTGDLSDTR	0	Unmodified	1487.7468	0.74675201	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	61.544	57.977	2	6.4579E-15	52433	160511_QHF_FH_JSI11i_1	182.35	126.09			1.0804	0.99139	11.419	6	0	Median	1.1524	0.94045	NaN	1	0	Median	0.81761	0.98629	NaN	1	0	Median	1.105	1.0741	10.606	2	0	Median	1.0255	1.109	17.587	2	0	Median	2808900000	1309300000	1499600000	685680000	285140000	400540000	670710000	341260000	329440000	675910000	322540000	353370000	776600000	360340000	416250000	52540	2665	49483	317365;317366;317367;317368;317369;317370	427199;427200;427201;427202;427203;427204;427205;427206	427200			8	
TVLDQQQTPSR	0	Unmodified	1271.647	0.64697839	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.09	5	2				4	3			3	4	4	3	21.758	16.099	2	9.2698E-38	15417	160511_QHF_FH_JSI12i_1	201.84	140.17			0.87309	0.95316	69.496	12	1	Median	0.40827	0.33726	182.77	2	1	Median	0.79066	0.93519	8.4535	4	0	Median	1.183	1.1533	15.371	3	0	Plateau	0.91371	0.96797	8.6	3	0	Median	2946100000	1720100000	1226000000	422720000	373640000	49082000	860480000	493860000	366620000	849770000	416930000	432840000	813150000	435660000	377500000	52541	1544	49484	317371;317372;317373;317374;317375;317376;317377;317378;317379;317380;317381;317382;317383;317384	427207;427208;427209;427210;427211;427212;427213;427214;427215;427216;427217;427218;427219;427220;427221;427222;427223;427224;427225;427226;427227;427228;427229	427209			23	
TVLEHYALEDDPLAAFK	1	Unmodified	1930.9676	0.96764382	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	86.953	86.35	2;3	1.0246E-30	76633	160511_QHF_FH_JSI10i_2	194.24	169.95			0.9566	0.92107	7.9883	7	0	Median	1.0587	0.90912	0.71011	2	0	Median	0.7691	0.95514	10.301	2	0	Median	0.95006	0.98194	9.0489	2	0	Median	0.9566	1.0743	NaN	1	0	Median	847070000	458640000	388430000	128960000	54409000	74554000	247310000	139390000	107920000	310220000	175840000	134370000	160590000	89002000	71584000	52542	2825	49485	317385;317386;317387;317388;317389;317390;317391	427230;427231;427232;427233;427234;427235;427236;427237;427238;427239;427240;427241;427242;427243;427244;427245	427244			16	
TVLEIDTPK	1	Unmodified	1014.5597	0.55972651	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	47.388	46.73	2	0.00012297	42494	160511_QHF_FH_JSI12i_1	109.48	68.049			1.3071	1.3313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3071	1.3313	NaN	1	1	Median	55452000	24769000	30683000	0	0	0	0	0	0	0	0	0	55452000	24769000	30683000	52543	1183	49486	317392	427246	427246			1	
TVLEKEMR	1	Acetyl (K)	1046.543	0.54303059	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		43.062	32.926	2	0.02558	19806	160513_QHF_FH_JSI11Kac_4	59.245	18.216			1.0563	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0563	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11475000	5846400	5628400	0	0	0	0	0	0	11475000	5846400	5628400	0	0	0	52544	4559	49487	317393	427247	427247	3186		1	
TVLELMNPEAQLPQVYPFAADLYQK	1	Unmodified	2877.4623	0.46226766	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	102	101.9	3	3.5819E-52	89648	160511_QHF_FH_JSI11i_2	204.81	198.23			1.0019	1.0631	13.739	6	1	Median	1.0227	0.85902	NaN	1	0	Median	0.9646	1.1157	NaN	1	0	Median	0.9469	0.9482	20.96	2	1	Median	1.0019	1.0633	4.8008	2	0	Median	1965300000	967800000	997500000	435640000	209670000	225970000	203460000	96842000	106620000	581800000	286060000	295750000	744400000	375230000	369170000	52545	1600	49488	317394;317395;317396;317397;317398;317399	427248;427249;427250;427251;427252;427253;427254;427255;427256;427257	427256			10	
TVLELQYVLDK	1	Unmodified	1319.7337	0.73366813	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	3	3	85.556	84.985	2	3.6322E-13	74915	160511_QHF_FH_JSI9i_2	172.27	142.11			1.0398	1.0126	12.98	11	0	Median	1.1067	0.92026	5.897	2	0	Median	0.75948	0.91293	13.048	3	0	Median	1.0045	1.018	13.452	3	0	Median	1.0822	1.0767	7.1369	3	0	Median	1575400000	810920000	764480000	232770000	112440000	120320000	347160000	203520000	143640000	461800000	226500000	235300000	533680000	268470000	265210000	52546	2536	49489	317400;317401;317402;317403;317404;317405;317406;317407;317408;317409;317410;317411	427258;427259;427260;427261;427262;427263;427264;427265;427266;427267;427268;427269;427270;427271;427272;427273;427274;427275;427276;427277;427278;427279;427280	427275			23	
TVLELVTQYR	0	Unmodified	1220.6765	0.6764876	5734	Q9Y6K5	OAS3	2'-5'-oligoadenylate synthase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	65.205	65.058	2	0.0019332	57905	160511_QHF_FH_JSI11i_3	75.294	56.549			0.85158	0.8415	24.675	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72939	0.70677	NaN	1	1	Median	0.99425	1.0019	NaN	1	0	Median	118990000	61521000	57466000	0	0	0	0	0	0	63974000	35593000	28381000	55012000	25928000	29085000	52547	5734	49490	317412;317413	427281;427282	427281			1	
TVLEQVLPI	0	Unmodified	1010.6012	0.60119739	1262	P25685	DNAJB1	DnaJ homolog subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	96.703	96.497	1;2	0.00039322	87668	160511_QHF_FH_JSI11i_1	81.548	55.811			1.0514	1.0359	10.674	7	0	Median	1.0966	0.91342	NaN	1	0	Median	0.73477	0.8628	5.2969	2	0	Median	1.1257	1.0745	0.54061	2	0	Median	1.0294	1.0539	2.4338	2	0	Median	452890000	222730000	230160000	95438000	42566000	52872000	121290000	65227000	56065000	114100000	57762000	56333000	122070000	57179000	64890000	52548	1262	49491	317414;317415;317416;317417;317418;317419;317420	427283;427284;427285;427286;427287;427288;427289;427290;427291;427292	427283			9	
TVLFTNAR	0	Unmodified	920.50797	0.50796571	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.7	1	3	3							2	1	2	2	35.25	34.594	2	0.0066274	30077	160511_QHF_FH_JSI9i_2	61.999	13.496			0.93398	0.88253	20.806	7	0	Median	1.2673	1.0413	33.145	2	0	Median	0.72373	0.88253	NaN	1	0	Median	1.0164	0.99082	20.762	2	0	Median	0.80601	0.81528	18.966	2	0	Median	658050000	310720000	347330000	199520000	76353000	123170000	90056000	55632000	34424000	190670000	92863000	97806000	177810000	85876000	91931000	52549	1532	49492	317421;317422;317423;317424;317425;317426;317427	427293;427294;427295;427296;427297;427298;427299	427296			7	
TVLGTPEVLLGALPGAGGTQR	0	Unmodified	2006.116	0.1160394	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.68	0.653	8	9	2							2	5	5	7	99.508	99.396	2;3	3.3124E-22	87306	160511_QHF_FH_JSI9i_2	198.59	169.97			0.98947	1.0725	13.59	17	5	Median	1.3616	1.1566	0.37563	2	0	Median	0.86335	1.0577	14.056	4	0	Median	1.0616	1.0561	15.272	5	1	Median	1.0542	1.1037	14.869	6	4	Median	852700000	417570000	435120000	160050000	67189000	92864000	199600000	105750000	93856000	313320000	157990000	155330000	179730000	86647000	93078000	52550	1507	49493	317428;317429;317430;317431;317432;317433;317434;317435;317436;317437;317438;317439;317440;317441;317442;317443;317444;317445;317446	427300;427301;427302;427303;427304;427305;427306;427307;427308;427309;427310;427311;427312;427313;427314;427315;427316;427317;427318;427319;427320;427321;427322;427323;427324;427325;427326;427327;427328;427329;427330;427331	427321			32	
TVLHTGSAPSSSTPFNK	1	Unmodified	1729.8635	0.8635131	183	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	36.123	35.362	3	1.9158E-11	31008	160511_QHF_FH_JSI11i_3	110.97	100.32			1.1378	1.0328	22.979	4	0	Median	1.4331	1.1706	NaN	1	0	Median	0.71707	0.82818	NaN	1	0	Median	0.94939	0.91127	NaN	1	0	Median	1.3637	1.3685	NaN	1	0	Median	443020000	201060000	241960000	55850000	18791000	37059000	125100000	71239000	53859000	168460000	76303000	92154000	93618000	34730000	58888000	52551	183	49494	317447;317448;317449;317450	427332;427333;427334;427335;427336;427337;427338;427339	427333			7	
TVLIACNVK	1	Unmodified	1016.5689	0.56885141	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.42	1	4					2	3		2	2	4	2	44.62	38.987	2	0.00030202	33488	160511_QHF_FH_JSI12i_2	83.265	58.342			0.74565	0.76994	20.329	10	1	Median	0.83892	0.72193	12.74	2	0	Median	0.64634	0.76994	0.23284	2	0	Median	0.7023	0.69069	16.744	4	0	Median	1.0124	1.1042	11.641	2	1	Median	422320000	239740000	182580000	49437000	31550000	17887000	67559000	42727000	24832000	199990000	118080000	81909000	105340000	47382000	57953000	52552	1254	49495	317451;317452;317453;317454;317455;317456;317457;317458;317459;317460	427340;427341;427342;427343;427344;427345;427346;427347;427348	427341			9	
TVLIMELINNVAK	1	Oxidation (M)	1472.8273	0.82725094	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.68	6.41			14					1	10	6	7	7	5	95.531	92.17	2;3	1.7152E-41	45005	160513_QHF_FH_JSI9Kac_6	202.56	144.7			1.0952	1.0889	16.552	23	5	Median	1.3597	1.1317	21.453	6	0	Median	0.90012	1.0792	7.878	6	2	Median	1.1694	1.1006	21.691	6	3	Median	0.97777	1.0288	8.1098	5	0	Median	2053100000	980770000	1072400000	438360000	189880000	248490000	541230000	271780000	269450000	529520000	234230000	295290000	544010000	284880000	259130000	52553	851	49496	317461;317462;317463;317464;317465;317466;317467;317468;317469;317470;317471;317472;317473;317474;317475;317476;317477;317478;317479;317480;317481;317482;317483;317484;317485	427349;427350;427351;427352;427353;427354;427355;427356;427357;427358;427359;427360;427361;427362;427363;427364;427365;427366;427367;427368;427369;427370;427371;427372;427373;427374;427375;427376;427377;427378;427379;427380;427381;427382;427383;427384;427385;427386;427387	427373		377	38	
TVLIMELINNVAK	1	Unmodified	1456.8323	0.83233632	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		8	10						8	6	7	6	7	100.17	97.522	2;3	9.5429E-172	49290	160513_QHF_FH_JSI11Kac_6	309.94	281.54			0.97163	0.99664	14.506	26	4	Median	1.1485	1.0068	19.358	6	0	Median	0.96379	1.0097	9.9589	7	2	Median	0.8491	0.85157	17.828	6	0	Median	0.96701	1.0219	11.067	7	2	Median	96740000000	49835000000	46905000000	9435900000	4579400000	4856500000	28206000000	14427000000	13778000000	14441000000	6722800000	7718100000	44657000000	24105000000	20552000000	52554	851	49496	317486;317487;317488;317489;317490;317491;317492;317493;317494;317495;317496;317497;317498;317499;317500;317501;317502;317503;317504;317505;317506;317507;317508;317509;317510;317511	427388;427389;427390;427391;427392;427393;427394;427395;427396;427397;427398;427399;427400;427401;427402;427403;427404;427405;427406;427407;427408;427409;427410;427411;427412;427413;427414;427415;427416;427417;427418;427419;427420;427421;427422;427423;427424;427425;427426;427427;427428;427429;427430;427431;427432;427433	427400			46	
TVLITGANSGLGR	0	Unmodified	1257.7041	0.70409934	4842	Q9HBH5	RDH14	Retinol dehydrogenase 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								2	1	2	48.365	47.405	2	0.00035777	40530	160511_QHF_FH_JSI12i_3	70.977	11.177			0.56888	0.7041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56888	0.7041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21590000	14943000	6646700	0	0	0	21590000	14943000	6646700	0	0	0	0	0	0	52555	4842	49497	317512;317513;317514;317515;317516	427434;427435;427436;427437;427438	427438			5	
TVLKQEMNR	1	Acetyl (K)	1159.6019	0.60194245	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	38.121	28.473	2	0.0059876	17000	160513_QHF_FH_JSI12Kac_4	71.349	56.683			0.92604	1.0743	13.432	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91495	1.0743	NaN	1	0	Median	0.92604	0.91671	NaN	1	0	Median	1.0995	1.1974	NaN	1	0	Median	29159000	14377000	14782000	0	0	0	12134000	5685800	6447900	7981900	4049000	3932900	9043700	4642100	4401600	52556	4518	49498	317517;317518;317519	427439;427440;427441	427441	3176		3	
TVLKSFLSQGQVLK	2	Acetyl (K)	1588.9188	0.91884314	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	82.922	73.48	2	0.03877	39058	160513_QHF_FH_JSI12Kac_6	61.11	40.904			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52557	1612	49499	317520	427442	427442			1	
TVLLSIQALLSAPNPDDPLANDVAEQWK	1	Unmodified	3017.571	0.57096648	1937	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.029	92.308	3	6.5134E-49	53871	160513_QHF_FH_JSI10Kac_6	167.51	154.73			0.90781	1.0901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90781	1.0901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152310000	82864000	69449000	0	0	0	152310000	82864000	69449000	0	0	0	0	0	0	52558	1937	49500	317521	427443;427444	427443			2	
TVLMLADQMISR	0	Unmodified	1376.7156	0.715592	1633	P48729;Q8N752	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	3	1	1	79.513	74.368	2	1.4986E-06	40316	160513_QHF_FH_JSI10Kac_6	115.33	97.015			0.87061	1.0191	30.138	6	4	Median	1.6325	1.4136	NaN	1	1	Median	0.76275	0.91627	11.083	3	3	Plateau	0.60203	0.57063	NaN	1	0	Median	1.0538	1.0576	NaN	1	0	Median	397680000	208110000	189570000	46459000	18377000	28082000	227650000	114700000	112950000	17513000	10931000	6582200	106060000	64101000	41956000	52559	1633	49501	317522;317523;317524;317525;317526;317527	427445;427446;427447;427448;427449;427450	427449			5	
TVLMLADQMISR	0	Oxidation (M)	1392.7105	0.71050662	1633	P48729;Q8N752	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	yes	no	0	0	1	0	By MS/MS				15	0								1		1				71.523	60.932	2	0.012903	31608	160513_QHF_FH_JSI9Kac_5	64.297	44.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52560	1633	49501	317528	427451	427451		1305	1	
TVLMNPNIASVQTNEVGLK	1	Unmodified	2027.0721	0.072125671	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.775	8	9	6							6	7	5	5	77.183	76.438	2;3	3.2889E-54	67056	160511_QHF_FH_JSI11i_2	222.16	222.16			0.91903	0.99987	10.866	23	5	Median	1.1321	0.93144	12.24	6	1	Median	0.87702	1.0743	13.6	7	4	Median	0.91925	0.94536	6.6241	5	0	Median	0.91903	0.99987	3.8266	5	0	Median	5672000000	2760100000	2911800000	1150100000	539460000	610610000	1539500000	765130000	774360000	1700600000	819750000	880870000	1281800000	635790000	645990000	52561	1372	49502	317529;317530;317531;317532;317533;317534;317535;317536;317537;317538;317539;317540;317541;317542;317543;317544;317545;317546;317547;317548;317549;317550;317551	427452;427453;427454;427455;427456;427457;427458;427459;427460;427461;427462;427463;427464;427465;427466;427467;427468;427469;427470;427471;427472;427473;427474;427475;427476;427477;427478;427479;427480;427481;427482;427483;427484;427485;427486;427487;427488;427489;427490;427491;427492;427493;427494;427495;427496;427497;427498;427499;427500	427490			49	
TVLMNPNIASVQTNEVGLK	1	Oxidation (M)	2043.067	0.067040293	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								3	2	2	2	67.353	66.694	2;3	1.7409E-24	60831	160511_QHF_FH_JSI12i_1	179.79	158.24			0.9551	0.93967	18.526	8	2	Median	0.95085	0.81916	20.548	3	2	Median	0.94508	1.1064	NaN	1	0	Median	0.97364	0.93967	3.6772	2	0	Median	0.96061	1.0233	1.0823	2	0	Median	348340000	174020000	174320000	95900000	53360000	42540000	52013000	22434000	29579000	100890000	50426000	50466000	99536000	47798000	51738000	52562	1372	49502	317552;317553;317554;317555;317556;317557;317558;317559;317560	427501;427502;427503;427504;427505;427506;427507;427508;427509;427510;427511;427512;427513;427514;427515	427506		1012	15	
TVLNQILR	0	Unmodified	955.58147	0.581465	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	2	1	1	51.068	50.082	2	0.00012853	41925	160511_QHF_FH_JSI10i_3	126.67	81.586			0.93685	1.1917	17.001	6	1	Linear	1.3446	1.106	12.993	2	0	Median	0.85035	1.0118	15.112	2	0	Median	0.75324	0.75459	NaN	1	0	Median	0.89092	0.91106	NaN	1	1	Median	801890000	401770000	400120000	284560000	118060000	166490000	264540000	139690000	124850000	72991000	40745000	32246000	179800000	103270000	76529000	52563	3290	49503	317561;317562;317563;317564;317565;317566	427516;427517;427518;427519;427520;427521;427522;427523;427524;427525;427526	427517			11	
TVLNSEVLEQRK	1	Unmodified	1414.778	0.77799256	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							1	4	2		37.508	36.521	3	3.258E-05	30343	160511_QHF_FH_JSI10i_3	100.02	86.594			0.62877	0.64818	31.188	6	5	Median	1.1367	0.96152	NaN	1	0	Median	0.56044	0.64818	31.405	4	4	Median	0.58397	0.53624	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	544500000	331170000	213330000	54225000	22763000	31462000	337210000	205060000	132150000	153060000	103350000	49716000	0	0	0	52564	8	49504	317567;317568;317569;317570;317571;317572;317573	427527;427528;427529;427530;427531;427532;427533;427534	427529			8	
TVLPFSQEFQR	0	Unmodified	1350.6932	0.6932003	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	71.303	70.661	2	4.0252E-10	62885	160511_QHF_FH_JSI10i_2	139.43	101.88			1.066	1.0196	7.211	6	1	Median	1.1981	1.0268	NaN	1	0	Median	0.81672	0.99351	NaN	1	0	Median	1.1212	1.0751	11.338	2	1	Median	1.0193	1.0758	8.5735	2	0	Median	775730000	388490000	387240000	88879000	44432000	44447000	115490000	64931000	50556000	303890000	148870000	155030000	267470000	130260000	137210000	52565	3229	49505	317574;317575;317576;317577;317578;317579	427535;427536;427537;427538;427539;427540;427541;427542;427543;427544	427542			10	
TVLPTVPESPEEEVK	1	Unmodified	1652.8509	0.85088273	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	61.611	60.97	2	7.6447E-10	55318	160511_QHF_FH_JSI11i_1	148.18	99.543			0.89157	0.89986	7.0004	4	0	Median	1.0459	0.86483	NaN	1	0	Median	0.77878	0.93631	NaN	1	0	Median	0.99106	0.9597	NaN	1	0	Median	0.80206	0.82508	NaN	1	0	Median	325630000	168550000	157080000	94199000	50925000	43273000	81805000	36373000	45432000	79026000	41132000	37894000	70599000	40115000	30485000	52566	484	49506	317580;317581;317582;317583	427545;427546;427547;427548;427549;427550	427545			6	
TVLQEIK	1	Unmodified	829.49092	0.49091866	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	29.369	28.694	2	0.029068	25062	160511_QHF_FH_JSI10i_2	52.786	16.085			1.0376	1.0928	21.623	7	0	Median	0.99104	0.83745	0.14262	2	0	Median	0.90424	1.11	17.655	2	0	Median	1.3907	1.3728	5.8909	2	0	Median	1.0483	1.0928	NaN	1	0	Median	500410000	251750000	248660000	97681000	45450000	52231000	149330000	83159000	66168000	202450000	93572000	108880000	50954000	29570000	21384000	52567	3426	49507	317584;317585;317586;317587;317588;317589;317590	427551;427552;427553;427554	427554			4	
TVLQELINVLK	1	Unmodified	1268.7704	0.77038799	1779	P52732	KIF11	Kinesin-like protein KIF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	101.11	101.02	2	0.00032027	89499	160511_QHF_FH_JSI10i_2	75.509	54.045			1.0826	0.93105	44.17	5	1	Median	1.0826	0.93105	NaN	1	1	Median	0.53546	0.64476	NaN	1	0	Median	0.56	0.5689	NaN	1	0	Median	1.306	1.4038	25.646	2	0	Median	377350000	194970000	182380000	43966000	18612000	25354000	73926000	47755000	26170000	59160000	34058000	25102000	200300000	94547000	105750000	52568	1779	49508	317591;317592;317593;317594;317595	427555;427556;427557	427557			3	
TVLQIDDNVTSAVEGINR	0	Unmodified	1942.996	0.99598384	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								2	2	3	2	79.462	78.952	2;3	2.3553E-81	71620	160511_QHF_FH_JSI10i_1	244.36	184.94			0.87958	1.0275	13.459	7	1	Median	1.2644	1.0275	NaN	1	0	Median	0.83918	0.97157	11.538	2	1	Median	0.91107	0.87995	25.551	2	0	Median	0.95281	0.98778	9.2151	2	0	Median	273260000	136630000	136640000	26762000	9206100	17555000	87550000	48717000	38833000	88939000	45198000	43740000	70012000	33504000	36508000	52569	2707	49509	317596;317597;317598;317599;317600;317601;317602;317603;317604	427558;427559;427560;427561;427562;427563;427564;427565;427566;427567;427568;427569	427564			12	
TVLQLSLR	0	Unmodified	928.57057	0.57056597	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			15.609	14.939	2	0.0098416	12500	160511_QHF_FH_JSI10i_2	55.676	0.14556			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52570	4334	49510	317605	427570	427570			1	
TVLQMDELK	1	Unmodified	1075.5583	0.5583463	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	52.67	51.906	2	0.00015459	46133	160511_QHF_FH_JSI9i_1	88.948	26.949			0.83096	0.85504	13.952	6	0	Median	1.0519	0.84685	NaN	1	0	Median	0.71078	0.8548	NaN	1	0	Median	0.77844	0.77201	19.633	2	0	Median	0.87781	0.94257	13.743	2	0	Median	574500000	315700000	258800000	60604000	25847000	34757000	126380000	68226000	58150000	214040000	121520000	92515000	173480000	100110000	73374000	52571	1532	49511	317606;317607;317608;317609;317610;317611	427571;427572;427573;427574;427575;427576;427577;427578;427579	427578			9	
TVLQQVIEDGSK	1	Unmodified	1315.6983	0.69834526	2936	Q5T160	RARS2	Probable arginine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.38	50.714	2	0.0012222	46059	160511_QHF_FH_JSI12i_1	66.663	47.392			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52572	2936	49512	317612	427580	427580			1	
TVLSANADHMAQIEGLMDDVDFK	1	Unmodified	2519.1672	0.16722462	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	98.594	98.527	3;4	1.5574E-48	85251	160511_QHF_FH_JSI12i_3	209.24	187.44			0.96291	1.0001	17.2	8	3	Median	1.1111	0.95353	NaN	1	1	Median	0.81002	0.99561	NaN	1	1	Median	0.85187	0.87123	27.063	3	1	Median	0.98156	1.1387	8.036	3	0	Plateau	735970000	335530000	400440000	55756000	24338000	31419000	77148000	34280000	42868000	302300000	148940000	153350000	300770000	127970000	172800000	52573	5633	49513	317613;317614;317615;317616;317617;317618;317619;317620	427581;427582;427583;427584;427585;427586;427587;427588;427589;427590;427591	427588			10	
TVLSANADHMAQIEGLMDDVDFK	1	Oxidation (M)	2535.1621	0.16213924	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	85.695	85.543	3	0.0017585	74240	160511_QHF_FH_JSI12i_3	39.935	35.984			2.1521	2.1754	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1521	2.1754	NaN	1	0	Median	35345000	10202000	25143000	0	0	0	0	0	0	0	0	0	35345000	10202000	25143000	52574	5633	49513	317621	427592	427592		2718	1	
TVLSKPTDSSPEVINYLGNK	2	Unmodified	2161.1267	0.12666366	4205	Q96Q15	SMG1	Serine/threonine-protein kinase SMG1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	63.587	63.444	3	2.5222E-08	56326	160511_QHF_FH_JSI11i_3	102.33	93.28			1.1478	1.152	25.996	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4592	1.3845	NaN	1	0	Median	0.90288	0.95858	NaN	1	0	Median	108170000	53167000	55004000	0	0	0	0	0	0	60868000	29651000	31217000	47303000	23516000	23787000	52575	4205	49514	317622;317623;317624	427593;427594;427595	427593			2	
TVLSLFDEEEDKMEDQNIIQAPQK	2	Unmodified	2819.3535	0.35350507	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	1			By MS/MS		3	0			1									1		87.669	87.669	3	0.0022875	78179	160511_QHF_FH_JSI11i_3	40.012	31.278			1.8238	1.6875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8238	1.6875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14259000	4497100	9762100	0	0	0	0	0	0	14259000	4497100	9762100	0	0	0	52576	3011	49515	317625	427596	427596			1	
TVLSNNLSPFAMDKK	2	Acetyl (K)	1705.8709	0.87090667	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	15	0								6		1	2	2	1	79.552	69.071	2;3	3.2067E-06	36630	160513_QHF_FH_JSI11Kac_5	116.01	93.094			0.72636	0.69939	21.871	6	0	Median	0.80468	0.67962	NaN	1	0	Median	0.49556	0.5905	18.606	2	0	Median	0.93514	0.91959	5.5347	2	0	Median	0.65567	0.71973	NaN	1	0	Median	33504000	17086000	16417000	1351700	560230	791490	5996300	3434000	2562400	24972000	12404000	12568000	1183900	688310	495590	52577	2285	49516	317626;317627;317628;317629;317630;317631	427597;427598;427599;427600;427601;427602	427598	2400		6	
TVLSNNLSPFAMDKK	2	Acetyl (K);Oxidation (M)	1721.8658	0.86582129	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.7	0.471							1	2			1	1	1	74.324	63.668	2	1.8181E-16	33974	160513_QHF_FH_JSI11Kac_5	142.91	109.5			1.0523	1.0814	3.4691	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0796	1.0552	NaN	1	0	Median	1.0257	1.1083	NaN	1	0	Median	12016000	5324700	6691100	0	0	0	0	0	0	6120700	2513400	3607200	5895200	2811300	3083900	52578	2285	49516	317632;317633;317634	427603;427604;427605;427606	427605	2400	1883	4	
TVLSNVQEELDR	0	Unmodified	1401.71	0.70997257	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	53.255	52.429	2	7.7616E-16	44853	160511_QHF_FH_JSI12i_2	159.09	121.61			0.89686	1.0258	21.323	6	3	Median	1.2902	1.1074	NaN	1	0	Median	0.83969	1.0117	NaN	1	1	Median	0.98704	0.95346	19.665	2	1	Median	0.76412	0.81691	34.153	2	1	Median	883210000	420180000	463030000	109320000	44798000	64520000	145970000	74713000	71255000	309280000	130670000	178610000	318650000	170000000	148650000	52579	312	49517	317635;317636;317637;317638;317639;317640	427607;427608;427609;427610;427611;427612;427613;427614;427615;427616;427617	427609			11	
TVLSSHK	1	Unmodified	770.42865	0.42865276	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	5.5795	5.4132	2	0.0072267	3191	160511_QHF_FH_JSI12i_3	89.55	46.484			0.98655	0.96181	11.342	5	1	Median	1.1901	0.96181	NaN	1	0	Median	0.70909	0.82354	NaN	1	0	Median	1.0774	1.0491	NaN	1	0	Median	0.89599	0.8948	13.58	2	1	Median	2090900000	1135200000	955730000	275120000	107010000	168110000	339300000	175080000	164210000	571080000	274430000	296650000	905440000	578680000	326760000	52580	3860	49518	317641;317642;317643;317644;317645	427618;427619;427620;427621	427621			4	
TVLSSSLNNHPQTSVPNASALHPSLR	0	Unmodified	2726.41	0.40998959	3144	Q6UUV7	CRTC3	CREB-regulated transcription coactivator 3	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				58.675	57.13	4	2.9317E-06	46796	160511_QHF_FH_JSI9i_3	57.922	50.89			1.7071	1.3969	NaN	1	1	Median	1.7071	1.3969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108670000	32306000	76366000	108670000	32306000	76366000	0	0	0	0	0	0	0	0	0	52581	3144	49519	317646	427622;427623	427623			2	
TVLVIAHR	0	Unmodified	907.56034	0.56033563	2212	Q03519;Q9NUT2	TAP2;ABCB8	Antigen peptide transporter 2;ATP-binding cassette sub-family B member 8, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	5	3	3	3	33.128	27.269	2;3	1.843E-07	15451	160513_QHF_FH_JSI10Kac_6	136.33	77.352			1.0272	1.0708	23.075	13	2	Median	1.2573	1.0625	38.274	4	1	Median	0.88	1.0501	7.0716	3	0	Plateau	1.1916	1.1208	11.048	3	0	Median	1.0209	1.0708	22.404	3	1	Median	1035900000	511980000	523920000	259040000	110490000	148550000	471460000	247540000	223910000	229410000	114300000	115110000	75997000	39642000	36355000	52582	2212	49520	317647;317648;317649;317650;317651;317652;317653;317654;317655;317656;317657;317658;317659;317660	427624;427625;427626;427627;427628;427629;427630;427631;427632;427633;427634;427635;427636;427637;427638;427639;427640;427641;427642;427643	427641			19	
TVLVNADGEEVAMR	0	Unmodified	1502.7399	0.73989249	2207	Q03252	LMNB2	Lamin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	52.547	51.878	2	3.4734E-06	46779	160511_QHF_FH_JSI10i_1	128.36	104.38			0.96503	1.0451	27.292	8	8	Median	1.9526	1.5898	13.026	2	2	Median	0.75346	0.88863	16.325	2	2	Median	1.0449	1.0309	24.871	2	2	Median	0.94725	0.98676	14.742	2	2	Median	1503400000	629960000	873470000	832810000	269720000	563090000	255990000	144830000	111170000	224250000	111370000	112880000	190380000	104040000	86340000	52583	2207	49521	317661;317662;317663;317664;317665;317666;317667;317668	427644;427645;427646;427647;427648;427649;427650;427651	427649			8	
TVLWNPEDLIPLPIPK	1	Unmodified	1844.0448	0.044771933	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			2	0		2									2			102.58	102.53	2;3	4.6342E-05	91097	160511_QHF_FH_JSI10i_2	107.17	83.94			0.57594	0.71201	44.166	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57594	0.71201	44.166	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50838000	35323000	15514000	0	0	0	50838000	35323000	15514000	0	0	0	0	0	0	52584	5466	49522	317669;317670	427652;427653	427653			2	
TVMAMGILHTIDTILTVVEDHK	1	Unmodified	2436.2757	0.27565286	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			100.48	93.037	4	5.5629E-60	55687	160513_QHF_FH_JSI10Kac_6	192.18	178.86			1.0254	1.0366	10.606	2	0	Median	1.3146	1.1173	NaN	1	0	Median	0.79975	0.96172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	244030000	130530000	113500000	94478000	42375000	52103000	149560000	88157000	61400000	0	0	0	0	0	0	52585	287	49523	317671;317672	427654;427655;427656;427657	427656			4	
TVMDIDTSGTFNVSR	0	Unmodified	1641.7668	0.76683553	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	64.934	64.441	2	0.00038385	58683	160511_QHF_FH_JSI12i_1	94.402	77.77			0.98852	1.1059	5.5648	2	1	Median	NaN	NaN	NaN	0	0	Median	0.90097	1.0633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0846	1.1503	NaN	1	1	Median	101480000	53714000	47766000	0	0	0	58631000	34493000	24137000	0	0	0	42849000	19220000	23628000	52586	5001	49524	317673;317674	427658;427659	427658			2	
TVMENFVAFVDK	1	Unmodified	1398.6853	0.68533773	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							2	1	4	3	85.567	85.093	2	1.0068E-15	74834	160511_QHF_FH_JSI11i_2	156.01	140.64		+	0.77217	0.74431	44.301	8	5	Median	1.1422	0.96412	13.29	2	2	Median	0.98965	1.2258	NaN	1	0	Median	0.59085	0.59223	25.091	3	2	Plateau	0.75461	0.80449	34.297	2	1	Median	762420000	440550000	321880000	184430000	84430000	100000000	112020000	64922000	47096000	234230000	144140000	90094000	231740000	147060000	84682000	52587	50	49525	317675;317676;317677;317678;317679;317680;317681;317682;317683;317684	427660;427661;427662;427663;427664;427665;427666;427667;427668;427669;427670;427671;427672	427669			13	
TVMIPGPQLKPEEEYEEAQGEAQKPQLA	2	Unmodified	3109.5278	0.52778104	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	76.918	76.356	3	1.801E-10	68145	160511_QHF_FH_JSI11i_3	83.881	76.41			1.0806	1.0289	14.333	7	2	Median	1.0806	0.95812	NaN	1	0	Median	0.80687	1.0129	NaN	1	0	Median	1.1521	1.0693	16.085	3	1	Median	1.1119	1.1713	18.329	2	1	Median	310880000	148520000	162360000	46273000	23934000	22339000	40661000	26761000	13901000	153420000	68136000	85288000	70517000	29689000	40828000	52588	4371	49526	317685;317686;317687;317688;317689;317690;317691	427673;427674;427675;427676;427677;427678;427679;427680;427681;427682;427683;427684;427685;427686	427675			14	
TVMLIPGDK	1	Unmodified	972.5314	0.53140327	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	53.365	50.373	2	0.0097011	43158	160511_QHF_FH_JSI12i_2	50.805	35.423			0.78921	0.77998	20.663	5	1	Median	0.91553	0.77998	NaN	1	0	Median	0.61225	0.73171	NaN	1	0	Median	0.76577	0.7641	5.9868	2	1	Median	1.0617	1.1965	NaN	1	0	Median	337840000	177520000	160310000	65468000	33317000	32152000	64546000	42450000	22097000	116480000	59472000	57005000	91344000	42285000	49058000	52589	5205	49527	317692;317693;317694;317695;317696	427687;427688;427689	427687			3	
TVMPYISTTPAK	1	Unmodified	1307.6795	0.67952407	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.22	6	4	3				2			3	4	4	4	55.266	53.103	2;3	2.0016E-07	46899	160511_QHF_FH_JSI10i_2	132.78	96.445			1.0566	1.0417	18.827	15	2	Median	1.0926	0.88494	13.832	3	0	Median	0.73528	0.84633	9.1272	4	0	Median	1.1851	1.1578	9.8042	4	0	Median	1.1222	1.2014	18.219	4	2	Median	4080300000	2070700000	2009600000	872510000	430670000	441840000	1121700000	635990000	485660000	1143200000	533930000	609230000	942960000	470110000	472850000	52590	841	49528	317697;317698;317699;317700;317701;317702;317703;317704;317705;317706;317707;317708;317709;317710;317711	427690;427691;427692;427693;427694;427695;427696;427697;427698;427699;427700;427701;427702;427703;427704;427705;427706;427707;427708;427709;427710;427711;427712;427713	427712			24	
TVMPYISTTPAK	1	Oxidation (M)	1323.6744	0.67443869	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	1	0			By MS/MS		14	0							1					1		47.998	37.558	2	0.041838	22168	160513_QHF_FH_JSI11Kac_4	36.334	7.247			1.1332	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1332	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2008200	1220800	787470	0	0	0	0	0	0	2008200	1220800	787470	0	0	0	52591	841	49528	317712	427714	427714			1	
TVMSNSTSVPAWQWLAHVYQSQGMMR	0	Unmodified	2994.3939	0.39388729	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.785	86.064	3	1.658E-53	49110	160513_QHF_FH_JSI10Kac_6	185.7	179.06			0.94628	1.1253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94628	1.1253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254350000	115570000	138780000	0	0	0	254350000	115570000	138780000	0	0	0	0	0	0	52592	3117	49529	317713	427715	427715			1	
TVMVGDRLDTDILLGATCGLK	1	Unmodified	2247.1603	0.16028875	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		94.667	94.272	3	0.0011117	82846	160511_QHF_FH_JSI11i_2	48.656	25.556			0.42931	0.40521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42931	0.40521	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16096000	12168000	3928000	0	0	0	0	0	0	16096000	12168000	3928000	0	0	0	52593	23	49530	317714	427716	427716			1	
TVNATGSSAAPGSSDKPSDPR	1	Unmodified	2000.9399	0.93992552	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.326	16.844	3	3.717E-07	14107	160511_QHF_FH_JSI11i_1	84.499	55.542			0.99276	1.0126	3.886	4	1	Median	1.3056	1.0808	NaN	1	0	Median	0.85529	1.0133	NaN	1	0	Median	1.0271	1.0118	NaN	1	0	Median	0.95962	0.98671	NaN	1	1	Median	394060000	186080000	207980000	99041000	38000000	61041000	95093000	54085000	41008000	103620000	40316000	63299000	96308000	53676000	42633000	52594	5466	49531	317715;317716;317717;317718	427717;427718;427719;427720;427721;427722;427723	427717			7	
TVNAVVEFFQSNK	1	Unmodified	1481.7514	0.75144346	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.742	79.501	2	0.00089691	69042	160511_QHF_FH_JSI12i_3	65.179	40.797			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52595	3196	49532	317719	427724	427724			1	
TVNDDQSPSTLNYLVHLQERPVK	1	Unmodified	2652.3507	0.35074337	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	1		By MS/MS			2.5	0.5		1	1								2			68.942	67.803	4	8.2716E-15	56773	160511_QHF_FH_JSI10i_3	119.79	117.31			0.77881	0.92665	31.131	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77881	0.92665	31.131	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102090000	60388000	41704000	0	0	0	102090000	60388000	41704000	0	0	0	0	0	0	52596	162	49533	317720;317721	427725;427726;427727	427725			3	
TVNDLSSQLSPLDLHPSLK	1	Unmodified	2063.0899	0.089884225	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.628	77.908	3	0.00089122	69280	160511_QHF_FH_JSI10i_2	50.957	44.835			0.53897	0.64085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53897	0.64085	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17984000	12081000	5902400	0	0	0	17984000	12081000	5902400	0	0	0	0	0	0	52597	1599	49534	317722	427728	427728			1	
TVNELQNLSSAEVVVPR	0	Unmodified	1853.9847	0.98469087	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								3	1	1	2	74.109	73.271	2;3	1.0568E-47	65070	160511_QHF_FH_JSI9i_1	249.66	197.73			0.76815	0.78128	50.226	7	6	Median	0.83493	0.68254	20.485	3	3	Plateau	0.63618	0.78128	NaN	1	0	Median	0.76815	0.79596	NaN	1	1	Median	0.40937	0.43648	98.52	2	2	Median	462850000	311970000	150880000	199800000	125350000	74457000	33522000	19468000	14054000	22816000	10383000	12433000	206700000	156770000	49933000	52598	132	49535	317723;317724;317725;317726;317727;317728;317729	427729;427730;427731;427732;427733;427734;427735	427731			7	
TVNELQNLTAAEVVVPR	0	Unmodified	1852.0054	0.005426314	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.35	0.478	11	6								3	4	5	5	81.704	81.139	2;3	4.1854E-30	74087	160511_QHF_FH_JSI12i_1	230.96	207.11			1.0739	1.1148	13.948	17	9	Median	1.646	1.3601	12.873	3	2	Median	0.92398	1.1192	9.2705	4	2	Median	1.1793	1.2041	8.9644	5	3	Median	0.90405	1.0188	9.2868	5	2	Median	738040000	354680000	383360000	108680000	38888000	69787000	196830000	101670000	95158000	219710000	109030000	110680000	212830000	105090000	107740000	52599	5153	49536	317730;317731;317732;317733;317734;317735;317736;317737;317738;317739;317740;317741;317742;317743;317744;317745;317746	427736;427737;427738;427739;427740;427741;427742;427743;427744;427745;427746;427747;427748;427749;427750;427751;427752;427753;427754;427755	427743			18	
TVNEPWTMGFSK	1	Unmodified	1395.6493	0.64928657	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	67.733	66.433	2	2.3604E-05	57957	160511_QHF_FH_JSI11i_2	88.338	61.895			3.7448	4.2652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7448	4.2652	NaN	1	1	Median	131690000	16259000	115430000	0	0	0	0	0	0	0	0	0	131690000	16259000	115430000	52600	3505	49537	317747;317748;317749	427756;427757;427758	427757			3	
TVNIPVLK	1	Unmodified	882.55385	0.55385327	2807	Q32P41	TRMT5	tRNA (guanine(37)-N1)-methyltransferase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.964	56.619	2	0.010658	48514	160511_QHF_FH_JSI12i_2	63.48	35.955			0.50141	0.53251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50141	0.53251	NaN	1	1	Median	14130000	9827900	4302500	0	0	0	0	0	0	0	0	0	14130000	9827900	4302500	52601	2807	49538	317750	427759	427759			1	
TVNLNLWDTAGQEEYDRLR	0	Unmodified	2292.1135	0.11347321	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	81.093	80.598	3	2.7185E-05	71910	160511_QHF_FH_JSI11i_3	89.846	77.164			1.1584	1.1572	5.1249	4	1	Median	1.4457	1.2304	NaN	1	0	Median	0.97966	1.1693	NaN	1	0	Median	1.1584	1.1158	3.6799	2	1	Median	NaN	NaN	NaN	0	0	Median	299430000	129970000	169460000	82900000	32785000	50115000	64002000	30508000	33494000	152530000	66677000	85855000	0	0	0	52602	2128	49539	317751;317752;317753;317754;317755	427760;427761;427762	427760			3	
TVNLVLK	1	Unmodified	785.50109	0.50108942	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	34.697	33.796	2	0.049013	28746	160511_QHF_FH_JSI12i_2	43.066	8.1738			1.1319	1.1262	26.918	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74737	0.90154	NaN	1	0	Median	1.1319	1.1262	NaN	1	0	Median	1.4217	1.5406	NaN	1	0	Median	84160000	44165000	39996000	0	0	0	26607000	18550000	8057200	31978000	14511000	17467000	25576000	11104000	14472000	52603	2199	49540	317756;317757;317758	427763	427763			1	
TVNQQTMAAPVVK	1	Unmodified	1385.7337	0.7336849	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	35.821	35.283	2	4.8605E-31	30892	160511_QHF_FH_JSI9i_1	194.17	172.72			0.97564	0.96624	27.684	5	2	Median	1.8299	1.5081	NaN	1	0	Median	0.82598	0.96624	NaN	1	0	Median	1.1365	1.1205	23.313	2	2	Median	0.74646	0.75692	NaN	1	0	Median	670630000	290420000	380210000	169060000	68670000	100390000	114510000	45106000	69403000	254930000	102620000	152310000	132120000	74021000	58102000	52604	5646	49541	317759;317760;317761;317762;317763	427764;427765;427766;427767;427768;427769;427770	427770			7	
TVNTFSQSVSSLFGEDNVR	0	Unmodified	2085.9967	0.99671212	3815	Q8WY22	BRI3BP	BRI3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	3	2	87.222	86.816	2;3	1.3224E-54	77432	160511_QHF_FH_JSI11i_3	268.01	258.96			1.0673	1.0915	9.8998	9	1	Median	1.2668	1.1134	19.512	2	1	Median	0.94531	1.1416	1.4238	2	0	Median	1.0673	1.0436	6.3749	3	0	Median	1.015	1.0517	12.729	2	0	Median	409220000	204460000	204760000	69766000	30027000	39739000	80531000	44273000	36258000	196560000	99923000	96642000	62356000	30235000	32121000	52605	3815	49542	317764;317765;317766;317767;317768;317769;317770;317771;317772;317773	427771;427772;427773;427774;427775;427776;427777;427778;427779;427780;427781;427782;427783;427784;427785;427786;427787;427788;427789	427774			19	
TVNVPFHLALSDK	1	Unmodified	1439.7773	0.77726428	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			5							1	1	1	2	71.688	70.984	2;3	6.3706E-11	61633	160511_QHF_FH_JSI12i_3	125.73	112.06			1.0928	1.0062	20.877	5	1	Median	1.2401	1.0415	NaN	1	0	Median	0.81994	0.93332	NaN	1	0	Median	1.0928	1.0062	NaN	1	0	Median	1.2447	1.2582	31.715	2	1	Median	452290000	228140000	224150000	15205000	9208200	5996800	36106000	22214000	13892000	137330000	75379000	61954000	263640000	121340000	142300000	52606	4678	49543	317774;317775;317776;317777;317778	427790;427791;427792	427791			3	
TVNVPFHLALSDKK	2	Unmodified	1567.8722	0.8722273	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		62.006	60.998	4	0.00029829	53862	160511_QHF_FH_JSI11i_3	76.151	69.988			1.1232	1.0345	4.4323	3	1	Median	1.1784	0.96398	NaN	1	0	Median	0.88891	1.046	NaN	1	0	Median	1.1232	1.0345	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85734000	42225000	43509000	27320000	7730600	19590000	17435000	9271800	8163400	40979000	25223000	15756000	0	0	0	52607	4678	49544	317779;317780;317781	427793;427794;427795	427793			3	
TVNVVQFEPSK	1	Unmodified	1246.6558	0.65575216	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	5.22	4	4					1	1		3	3	2	2	51.329	50.502	2	8.5847E-38	46132	160511_QHF_FH_JSI12i_1	202.56	168.76			0.88427	0.86929	18.554	8	2	Median	1.1349	0.95588	24.725	2	0	Median	0.70485	0.84346	22.35	2	0	Median	0.81311	0.79994	23.053	2	1	Median	0.80401	0.87749	20.72	2	1	Median	2277000000	1149400000	1127700000	529100000	230120000	298980000	545980000	288750000	257220000	714610000	357140000	357470000	487360000	273360000	213990000	52608	1519	49545	317782;317783;317784;317785;317786;317787;317788;317789;317790;317791	427796;427797;427798;427799;427800;427801;427802;427803;427804;427805;427806;427807;427808;427809;427810;427811;427812;427813;427814;427815;427816;427817;427818	427803			23	
TVPAHVETVVLFFPDVWHCLPTR	0	Unmodified	2719.3945	0.39446286	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			92.643	86.922	4	2.3682E-17	49805	160513_QHF_FH_JSI10Kac_6	122.3	111.76			1.4385	1.6733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4385	1.6733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	176550000	77952000	98599000	0	0	0	176550000	77952000	98599000	0	0	0	0	0	0	52609	3438	49546	317792	427819	427819			1	
TVPDSEAPPGWDR	0	Unmodified	1425.6525	0.6524577	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.128	45.451	2	0.00089475	41302	160511_QHF_FH_JSI12i_1	67.08	51.418			0.8818	0.8604	47.773	4	2	Median	1.0274	0.83139	NaN	1	0	Median	0.75684	0.89042	NaN	1	1	Median	0.37386	0.36387	NaN	1	1	Median	1.0333	1.0663	NaN	1	0	Median	257600000	151370000	106240000	50830000	26982000	23848000	58411000	28471000	29940000	74421000	51260000	23161000	73940000	44653000	29287000	52610	235	49547	317793;317794;317795;317796	427820;427821;427822;427823	427821			4	
TVPEELVKPEELSK	2	Unmodified	1596.8611	0.86105349	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.19	3.74	5	9	5				1	1		4	7	5	5	58.456	56.717	2;3	5.1273E-05	48956	160511_QHF_FH_JSI11i_2	102.73	81.87			1.0262	1.0017	18.024	21	5	Median	1.1048	0.91748	2.4927	4	0	Median	0.96369	1.1184	26.041	7	2	Median	1.0262	0.98398	6.8295	5	0	Median	0.96686	1.0918	19.835	5	3	Median	4963400000	2535300000	2428100000	799040000	418010000	381030000	1562700000	864240000	698460000	1470300000	648890000	821430000	1131400000	604190000	527160000	52611	5426	49548	317797;317798;317799;317800;317801;317802;317803;317804;317805;317806;317807;317808;317809;317810;317811;317812;317813;317814;317815;317816;317817	427824;427825;427826;427827;427828;427829;427830;427831;427832;427833;427834;427835;427836;427837;427838;427839;427840;427841;427842;427843;427844;427845;427846;427847;427848;427849;427850;427851;427852;427853;427854;427855	427845			32	
TVPEGQIILAK	1	Unmodified	1167.6863	0.68632401	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		55.303	54.791	2	0.035022	47404	160511_QHF_FH_JSI11i_2	46.462	27.191			2.1622	2.1896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1622	2.1896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19057000	6905700	12151000	0	0	0	0	0	0	19057000	6905700	12151000	0	0	0	52612	1716	49549	317818	427856	427856			1	
TVPFCSTFAAFFTR	0	Unmodified	1650.7864	0.78644876	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.3			3	1					10	3	4	5	2	95.947	89.416	2;3	5.6173E-25	46328	160513_QHF_FH_JSI12Kac_6	130.2	117.32			0.94696	0.95421	25.562	14	6	Median	1.4012	1.193	20.557	3	0	Median	0.93338	1.018	8.6409	4	3	Median	0.93278	0.89176	25.346	5	3	Median	1.2974	1.3612	4.0148	2	0	Median	24209000000	12590000000	11619000000	1905300000	827530000	1077700000	13295000000	7153600000	6141800000	6521500000	3384000000	3137500000	2486700000	1225200000	1261500000	52613	1322	49550	317819;317820;317821;317822;317823;317824;317825;317826;317827;317828;317829;317830;317831;317832	427857;427858;427859;427860;427861;427862;427863;427864;427865;427866;427867;427868;427869;427870;427871;427872;427873;427874;427875;427876	427872			20	
TVPFLPK	1	Unmodified	800.47963	0.47962569	4060	Q96EV8	DTNBP1	Dysbindin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	58.494	57.575	2	0.015357	49941	160511_QHF_FH_JSI11i_2	64.776	47.85			1.1231	1.1891	0.85879	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1561	1.1819	NaN	1	0	Median	1.0911	1.1964	NaN	1	0	Median	44565000	22533000	22032000	0	0	0	0	0	0	23232000	11510000	11722000	21333000	11023000	10310000	52614	4060	49551	317833;317834;317835	427877;427878;427879	427878			3	
TVPFYLVGLLLPLLNFK	1	Unmodified	1946.1645	0.16449314	3606	Q8NBW4	SLC38A9	Sodium-coupled neutral amino acid transporter 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		2	1	2	104.91	97.953	2;3	1.2027E-96	58677	160513_QHF_FH_JSI10Kac_6	240.41	216.94			0.6837	0.81336	37.822	3	1	Median	NaN	NaN	NaN	0	0	Median	0.61194	0.72797	15.685	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2856	1.3618	NaN	1	1	Median	453620000	304930000	148690000	0	0	0	414300000	287740000	126570000	0	0	0	39319000	17193000	22126000	52615	3606	49552	317836;317837;317838;317839;317840	427880;427881;427882;427883;427884;427885;427886	427885			7	
TVPINLIK	1	Unmodified	896.5695	0.56950333	362	O43708	GSTZ1	Maleylacetoacetate isomerase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	61.904	61.012	2	0.003714	54126	160511_QHF_FH_JSI10i_2	70.912	43.388			0.96077	1.0234	15.846	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64238	0.79722	NaN	1	0	Median	0.96077	1.0234	NaN	1	0	Median	0.98502	1.0695	NaN	1	0	Median	95365000	54901000	40464000	0	0	0	29667000	19765000	9902300	38700000	20286000	18414000	26998000	14850000	12147000	52616	362	49553	317841;317842;317843	427887;427888	427888			2	
TVPLAGHVGFDSLPDQLVNK	1	Unmodified	2106.111	0.11095402	2498	Q14141	SEPT6	Septin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	3	2	4	85.229	84.619	2;3	2.4329E-19	75649	160511_QHF_FH_JSI11i_3	165.17	150.7			1.0928	1.0894	15.358	9	3	Median	1.3034	1.1471	NaN	1	0	Median	0.94714	1.0894	22.605	3	2	Median	1.0013	0.99263	9.3338	2	0	Median	1.1873	1.2059	9.0374	3	1	Plateau	1990800000	1003600000	987220000	128610000	58795000	69811000	270190000	154900000	115290000	666350000	350890000	315460000	925630000	438970000	486660000	52617	2498	49554	317844;317845;317846;317847;317848;317849;317850;317851;317852;317853	427889;427890;427891;427892;427893;427894;427895;427896;427897;427898;427899;427900;427901;427902;427903	427889			15	
TVPLYESPR	0	Unmodified	1060.5553	0.55530983	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	39.719	38.811	2	0.033048	33091	160511_QHF_FH_JSI12i_2	47.603	17.796			1.179	1.2504	10.68	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1525	1.1595	NaN	1	1	Median	1.2062	1.3485	NaN	1	1	Median	208160000	55563000	152600000	0	0	0	0	0	0	118040000	34768000	83274000	90121000	20795000	69326000	52618	2734	49555	317854;317855	427904;427905	427904			2	
TVPLYESPRK	1	Unmodified	1188.6503	0.65027285	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	3.99		2	7						1	3	4	2	1	30.092	28.485	2;3	3.8558E-06	23229	160511_QHF_FH_JSI9i_3	87.298	59.969			0.94774	0.98582	27.396	10	3	Median	1.2219	1.0039	6.0182	3	0	Plateau	0.84854	1.0012	31.603	4	1	Median	1.2004	1.1451	50.831	2	2	Median	0.77452	0.79292	NaN	1	0	Median	1965300000	995290000	970040000	481420000	210880000	270540000	702170000	380900000	321260000	633990000	319460000	314530000	147750000	84046000	63701000	52619	2734	49556	317856;317857;317858;317859;317860;317861;317862;317863;317864;317865	427906;427907;427908;427909;427910;427911;427912;427913;427914;427915;427916;427917;427918;427919	427912			13	
TVPPAVTGITFLSGGQSEEEASINLNAINK	1	Unmodified	3056.5666	0.56660939	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.54	0.692	15	8	3							5	7	5	9	101.93	101.82	2;3;4	7.7086E-180	91857	160511_QHF_FH_JSI10i_1	297.95	291.99			0.84903	0.93901	18.142	25	6	Median	1.3543	1.1198	9.926	4	1	Median	0.69954	0.86428	19.592	7	2	Median	1.0248	1.0101	6.3478	5	0	Median	0.79946	0.88389	16.117	9	3	Median	19279000000	9941300000	9337500000	2514500000	1049100000	1465400000	6201800000	3482600000	2719200000	4905900000	2392000000	2513900000	5656600000	3017700000	2638900000	52620	803	49557	317866;317867;317868;317869;317870;317871;317872;317873;317874;317875;317876;317877;317878;317879;317880;317881;317882;317883;317884;317885;317886;317887;317888;317889;317890;317891	427920;427921;427922;427923;427924;427925;427926;427927;427928;427929;427930;427931;427932;427933;427934;427935;427936;427937;427938;427939;427940;427941;427942;427943;427944;427945;427946;427947;427948;427949;427950;427951;427952	427936			32	
TVPQSQTQPLHK	1	Unmodified	1362.7256	0.72556306	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	18.877	18.902	2	0.061001	15331	160511_QHF_FH_JSI12i_3	42.001	23.689			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6495000	6495000	0	0	0	0	0	0	0	0	0	0	6495000	6495000	0	52621	4059	49558	317892	427953	427953			1	
TVPQSSLTMGQLYEK	1	Unmodified	1680.8393	0.83927219	1913	P60520	GABARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4									2	4	2	62.987	62.293	2	2.9577E-06	54081	160511_QHF_FH_JSI11i_2	87.618	59.413			0.68944	0.77162	18.891	4	4	Median	NaN	NaN	NaN	0	0	Median	0.68285	0.78785	NaN	1	1	Median	0.56538	0.56007	NaN	1	1	Median	0.77083	0.80985	9.7817	2	2	Median	94195000	51574000	42621000	0	0	0	27103000	16155000	10947000	26972000	15607000	11365000	40120000	19812000	20309000	52622	1913	49559	317893;317894;317895;317896;317897;317898;317899;317900	427954;427955;427956;427957;427958;427959;427960;427961	427960			8	
TVPQYKYAAGVR	1	Acetyl (K)	1393.7354	0.73539946	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.687							2	3	1		2	3	1	56.993	46.418	2	0.0016763	23644	160513_QHF_FH_JSI10Kac_5	77.677	57.891			0.85885	0.98893	49.142	6	0	Median	NaN	NaN	NaN	0	0	Median	0.98923	1.1574	12.629	2	0	Median	0.49923	0.48409	53.765	3	0	Median	0.81876	0.927	NaN	1	0	Median	115640000	75128000	40515000	0	0	0	21758000	10685000	11073000	87424000	60618000	26805000	6461200	3824800	2636500	52623	1009	49560	317901;317902;317903;317904;317905;317906	427962;427963;427964;427965;427966;427967;427968	427968	811		7	
TVPSTPTLVVPHR	0	Unmodified	1402.7932	0.79324869	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			53.673	52.115	3	0.0068271	43557	160511_QHF_FH_JSI10i_3	47.815	32.939			1.5859	1.8777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5859	1.8777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15485000	5502500	9982100	0	0	0	15485000	5502500	9982100	0	0	0	0	0	0	52624	1016	49561	317907	427969	427969			1	
TVPVEAVTSK	1	Unmodified	1029.5706	0.57062555	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	2	3	38.56	34.343	2	0.00017227	30461	160511_QHF_FH_JSI10i_1	82.749	56.855			0.89979	0.98751	39.189	7	1	Median	0.43651	0.36124	NaN	1	1	Median	0.85701	1.0259	5.3962	2	0	Median	1.0398	0.99927	17.46	2	0	Median	0.89558	0.96556	4.0856	2	0	Median	1089900000	661130000	428800000	197870000	118160000	79712000	291530000	181520000	110010000	330980000	212980000	118010000	269550000	148480000	121070000	52625	2522	49562	317908;317909;317910;317911;317912;317913;317914;317915	427970;427971;427972;427973;427974;427975;427976;427977;427978;427979	427977			10	
TVQAAPPALPGPPGAPVNMYSR	0	Unmodified	2190.1256	0.12555822	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	74.052	73.551	2;3	2.8087E-09	66639	160511_QHF_FH_JSI10i_1	102.28	88.019			1.0606	1.0986	9.4191	4	1	Median	1.4482	1.182	NaN	1	1	Median	1.0699	1.1969	NaN	1	0	Median	1.0513	1.021	NaN	1	0	Median	1.0119	1.0015	NaN	1	0	Median	83521000	41996000	41524000	14789000	4161300	10628000	18455000	9652700	8801900	34864000	19545000	15319000	15413000	8637600	6775700	52626	235	49563	317916;317917;317918;317919;317920	427980;427981;427982;427983;427984;427985	427983			5	
TVQDALESLVAR	0	Unmodified	1300.6987	0.69867961	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				68.258	67.265	2	0.012922	59575	160511_QHF_FH_JSI9i_1	44.847	20.072			1.0415	0.85194	NaN	1	0	Median	1.0415	0.85194	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124240000	51569000	72667000	124240000	51569000	72667000	0	0	0	0	0	0	0	0	0	52627	2567	49564	317921	427986	427986			1	
TVQDLKQEIK	2	Acetyl (K)	1242.682	0.68196691	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						3						1	2	56.957	47.641	2	0.032238	25273	160513_QHF_FH_JSI12Kac_3	46.891	9.4156			0.74685	0.81351	82.465	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6326	0.60104	NaN	1	0	Median	1.4335	1.5219	88.581	2	0	Median	9794100	5725600	4068500	0	0	0	0	0	0	2685000	1494600	1190500	7109000	4231000	2878100	52628	3328	49565	317922;317923;317924	427987;427988	427987			2	
TVQDLTSVVQTLLQQMQDK	1	Unmodified	2174.1253	0.12528345	537	O75506	HSBP1	Heat shock factor-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	102.96	102.92	2;3	8.2527E-210	89739	160511_QHF_FH_JSI12i_3	401.47	365.05			0.85627	0.92242	15.311	8	1	Median	1.1273	0.98135	NaN	1	0	Median	0.89813	1.0676	7.7568	2	0	Median	1.0983	1.0372	17.218	3	1	Plateau	0.79523	0.81273	9.1484	2	0	Median	1305900000	608380000	697510000	123660000	56716000	66946000	196640000	94862000	101770000	554250000	236620000	317630000	431330000	220180000	211150000	52629	537	49566	317925;317926;317927;317928;317929;317930;317931;317932	427989;427990;427991;427992;427993;427994;427995;427996;427997;427998;427999;428000	427999			12	
TVQGPPTSDDIFER	0	Unmodified	1560.742	0.74200098	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	4										2	2		54.084	53.679	2	3.4705E-06	48296	160511_QHF_FH_JSI10i_1	128.67	119.72			1.0147	1.1923	12.282	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0007	1.1923	1.1165	2	2	Median	1.2005	1.155	21.004	2	2	Median	NaN	NaN	NaN	0	0	Median	539940000	255650000	284290000	0	0	0	222640000	100210000	122430000	317290000	155440000	161850000	0	0	0	52630	808	49567	317933;317934;317935;317936	428001;428002;428003;428004	428003			4	
TVQGSGHQEHINIHK	1	Unmodified	1683.8441	0.84411507	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		13.402	12.937	3;4	0.00049885	11435	160511_QHF_FH_JSI10i_3	46.746	33.628			0.69521	0.73227	39.817	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82743	0.97039	NaN	1	0	Median	0.58412	0.55258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75657000	49967000	25690000	0	0	0	15040000	8271400	6768300	60617000	41695000	18922000	0	0	0	52631	2522	49568	317937;317938	428005;428006;428007	428006			3	
TVQHQDSQVNALEVTPDR	0	Unmodified	2035.9923	0.99229545	4467	Q9BVC4	MLST8	Target of rapamycin complex subunit LST8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	36.171	35.262	3	1.7287E-07	29958	160511_QHF_FH_JSI12i_3	91.475	82.059			0.87216	0.95231	27.238	3	3	Median	NaN	NaN	NaN	0	0	Median	0.48748	0.59423	NaN	1	1	Median	0.95897	0.9526	NaN	1	1	Median	0.87216	0.95231	NaN	1	1	Median	135100000	69639000	65464000	0	0	0	51287000	26220000	25067000	46464000	23083000	23382000	37351000	20336000	17015000	52632	4467	49569	317939;317940;317941;317942	428008;428009;428010;428011;428012	428012			5	
TVQILEGQK	1	Unmodified	1014.571	0.5709599	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	8.4621	8.5598	3	0.059168	5954	160511_QHF_FH_JSI12i_3	14.494	7.1218			0.68562	0.68613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68562	0.68613	NaN	1	0	Median	122450000	82587000	39866000	0	0	0	0	0	0	0	0	0	122450000	82587000	39866000	52633	429	49570	317943	428013	428013			1	
TVQIPVYDFVSHSR	0	Unmodified	1646.8417	0.84165545	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	74.131	73.597	2;3	2.9673E-06	63921	160511_QHF_FH_JSI12i_3	112.68	108.84			1.3533	1.3164	15.751	7	7	Median	1.3645	1.1787	NaN	1	1	Median	1.1269	1.3617	NaN	1	1	Median	1.3852	1.3164	22.424	3	3	Plateau	1.127	1.2266	18.13	2	2	Median	844450000	403290000	441160000	97253000	55948000	41306000	143910000	68294000	75613000	336270000	157260000	179010000	267020000	121780000	145230000	52634	4574	49571	317944;317945;317946;317947;317948;317949;317950	428014;428015;428016;428017;428018;428019;428020	428020			7	
TVQLLLDFMLDVLLMPYGYVLNESQSR	0	Unmodified	3156.6239	0.62393003	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.32	100.6	3	2.0722E-08	59644	160513_QHF_FH_JSI10Kac_6	99.34	93.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61115000	61115000	0	0	0	0	61115000	61115000	0	0	0	0	0	0	0	52635	2997	49572	317951	428021	428021			1	
TVQLTSSELESTLETLK	1	Unmodified	1877.9834	0.98335347	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	9	9	3							6	6	6	3	93.975	93.548	2;3	5.0005E-137	85197	160511_QHF_FH_JSI12i_1	324.8	284.88			0.94573	0.94726	12.968	19	8	Median	1.1472	0.96716	8.6836	5	3	Median	0.78239	0.9367	16.234	6	3	Median	1.029	1.0325	17.333	5	2	Median	0.86362	0.91618	3.8778	3	0	Plateau	2335300000	1196700000	1138500000	416330000	168960000	247380000	733580000	393520000	340060000	679890000	342290000	337600000	505470000	291970000	213500000	52636	1544	49573	317952;317953;317954;317955;317956;317957;317958;317959;317960;317961;317962;317963;317964;317965;317966;317967;317968;317969;317970;317971;317972	428022;428023;428024;428025;428026;428027;428028;428029;428030;428031;428032;428033;428034;428035;428036;428037;428038;428039;428040;428041;428042;428043;428044;428045;428046;428047;428048;428049;428050;428051;428052;428053;428054;428055;428056;428057;428058;428059;428060;428061;428062	428036			41	
TVQPKPDYGAAVAFFEETAR	1	Unmodified	2196.0851	0.085133198	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		4	2							2	2	2		86.041	85.475	3	5.7055E-10	76202	160511_QHF_FH_JSI11i_3	117.31	111.01			0.88946	0.9217	21.063	6	2	Median	1.1805	1.0193	21.506	2	2	Median	0.82781	0.98141	1.6094	2	0	Median	0.76379	0.72741	19.663	2	0	Median	NaN	NaN	NaN	0	0	Median	284230000	134730000	149500000	49468000	24293000	25174000	57471000	25170000	32301000	177290000	85265000	92028000	0	0	0	52637	2203	49574	317973;317974;317975;317976;317977;317978	428063;428064;428065;428066;428067;428068;428069;428070	428064			8	
TVQPVAMGPDGLPVDASSVSNNYIQTLGR	0	Unmodified	2985.4866	0.48658493	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	96.316	96.078	3	3.313E-28	87349	160511_QHF_FH_JSI11i_1	140.04	124.05			1.1194	1.069	7.0145	4	0	Median	1.2974	1.0718	NaN	1	0	Median	0.86299	0.99735	NaN	1	0	Median	1.0876	1.0662	NaN	1	0	Median	1.1521	1.1825	NaN	1	0	Median	339940000	160000000	179950000	57991000	25131000	32860000	84541000	44129000	40412000	100450000	41860000	58587000	96963000	48876000	48088000	52638	442	49575	317979;317980;317981;317982;317983	428071;428072;428073;428074;428075;428076;428077;428078	428072			8	
TVQQHAGETDPVTTMR	0	Unmodified	1769.8366	0.83664643	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.04		9	4				1			2	3	6	3	24.84	23.373	2;3	6.9298E-16	19541	160511_QHF_FH_JSI12i_2	147.92	126.38			1.0825	1.1352	26.11	11	6	Median	1.6087	1.3807	8.1313	2	2	Median	0.81955	0.99003	31.054	2	2	Median	1.11	1.121	14.797	4	1	Median	0.87572	0.92754	29.512	3	1	Plateau	893980000	431320000	462670000	131550000	44863000	86690000	238690000	138600000	100090000	287720000	117350000	170380000	236010000	130510000	105500000	52639	2764	49576	317984;317985;317986;317987;317988;317989;317990;317991;317992;317993;317994;317995;317996;317997	428079;428080;428081;428082;428083;428084;428085;428086;428087;428088;428089;428090;428091;428092;428093;428094;428095;428096	428084			18	
TVQQHAGETDPVTTMR	0	Oxidation (M)	1785.8316	0.83156105	2764	Q16775	HAGH	Hydroxyacylglutathione hydrolase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	22.051	21.285	3	8.4589E-06	20005	160511_QHF_FH_JSI9i_2	99.747	88.226			1.0195	0.91793	30.3	4	1	Linear	0.92729	0.80425	NaN	1	0	Median	0.90181	1.1122	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3642	1.4494	20.151	2	1	Median	122540000	58453000	64085000	35812000	14965000	20847000	31111000	17660000	13452000	0	0	0	55616000	25829000	29787000	52640	2764	49576	317998;317999;318000;318001	428097;428098;428099;428100;428101;428102;428103	428100		2131	7	
TVQQVNQEK	1	Unmodified	1072.5513	0.55128709	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	8.5133	5.8801	2	7.1054E-13	5368	160511_QHF_FH_JSI11i_1	189.38	151.82			1.0114	1.0289	38.472	6	2	Median	1.276	1.0591	NaN	1	0	Median	0.97541	1.1597	NaN	1	0	Median	1.35	1.3043	37.616	2	1	Median	0.65571	0.69732	41.502	2	1	Median	856300000	443780000	412520000	201870000	104210000	97657000	227670000	134040000	93631000	226770000	90076000	136690000	199990000	115450000	84541000	52641	3896	49577	318002;318003;318004;318005;318006;318007	428104;428105;428106;428107;428108;428109;428110;428111	428104			8	
TVQSLEIDLDSMR	0	Unmodified	1505.7396	0.73955814	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.785	7	6	4							4	5	4	4	73.791	73.045	2;3	1.909E-116	63031	160511_QHF_FH_JSI12i_2	270.74	224.27			1.0899	1.0547	49.175	17	3	Median	1.2402	1.01	48.107	4	1	Median	1.1011	1.2803	21.766	5	1	Median	1.0634	1.0287	18.87	4	1	Median	1.0357	1.1229	82.269	4	0	Median	4543300000	2171500000	2371900000	800710000	392810000	407890000	1623400000	814780000	808650000	912260000	415980000	496280000	1206900000	547890000	659060000	52642	842	49578	318008;318009;318010;318011;318012;318013;318014;318015;318016;318017;318018;318019;318020;318021;318022;318023;318024	428112;428113;428114;428115;428116;428117;428118;428119;428120;428121;428122;428123;428124;428125;428126;428127;428128;428129;428130;428131;428132;428133;428134;428135;428136;428137;428138;428139;428140;428141;428142	428118			31	
TVQSLEIDLDSMR	0	Oxidation (M)	1521.7345	0.73447277	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	1	0		By matching	By matching	By MS/MS	1.25	0.433	3	1									1	1	2	59.904	59.204	2	0.0001373	53911	160511_QHF_FH_JSI12i_1	96.067	84.971			0.59143	0.61517	23.652	4	0	Median	NaN	NaN	NaN	0	0	Median	0.51634	0.60628	NaN	1	0	Median	0.64191	0.62418	NaN	1	0	Median	0.69165	0.74425	36.21	2	0	Median	223580000	134500000	89079000	0	0	0	83441000	46869000	36572000	58996000	34519000	24477000	81142000	53111000	28031000	52643	842	49578	318025;318026;318027;318028	428143;428144;428145;428146	428146		362	4	
TVQSLEIDLDSMRNLK	1	Unmodified	1860.9615	0.96151259	842	P05783;CON__H-INV:HIT000015463	KRT18	Keratin, type I cytoskeletal 18	yes	no	0	0	0	1				By MS/MS	3	0			1										1	77.871	77.604	3	1.6187E-05	67370	160511_QHF_FH_JSI12i_3	106.36	88.85			1.4906	1.5941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4906	1.5941	NaN	1	1	Median	70605000	26646000	43959000	0	0	0	0	0	0	0	0	0	70605000	26646000	43959000	52644	842	49579	318029	428147	428147			1	
TVQSNSPISALAPTGK	1	Unmodified	1569.8362	0.83623572	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	53.027	52.272	2	1.5093E-16	46244	160511_QHF_FH_JSI9i_1	117.7	84.475			0.73085	0.74206	30.231	3	1	Plateau	0.53495	0.4374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73841	0.72216	NaN	1	0	Median	0.73085	0.75309	NaN	1	0	Median	137140000	76506000	60636000	21951000	15958000	5992900	0	0	0	56752000	29274000	27477000	58439000	31273000	27166000	52645	671	49580	318030;318031;318032;318033	428148;428149;428150;428151;428152	428152			5	
TVQTAAANAASTAASSAAQNAFK	1	Unmodified	2151.0556	0.055623984	252	O15126	SCAMP1	Secretory carrier-associated membrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	62.125	61.395	2;3	1.2237E-33	54477	160511_QHF_FH_JSI9i_1	207.53	187.79			1.014	0.86171	12.758	4	1	Linear	1.1472	0.94935	NaN	1	0	Median	0.64749	0.76532	NaN	1	1	Median	0.99014	0.97795	NaN	1	0	Median	0.75463	0.78216	NaN	1	0	Median	705460000	330300000	375150000	216080000	89068000	127010000	123380000	77090000	46286000	196730000	101080000	95650000	169270000	63068000	106210000	52646	252	49581	318034;318035;318036;318037;318038	428153;428154;428155;428156;428157;428158;428159	428158			6	
TVQTAVFLYSLYK	1	Unmodified	1531.8286	0.82863115	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.74		4	3						9	5	3	5	3	88.899	83.972	2;3	1.4291E-31	41282	160513_QHF_FH_JSI12Kac_6	205.46	175.21			0.99434	0.94763	16.365	15	4	Median	1.066	0.88744	5.4917	4	1	Median	0.6783	1.0731	17.112	3	1	Plateau	0.99434	0.94741	22.147	5	2	Median	1.1243	1.1731	8.5269	3	0	Plateau	3059100000	1625400000	1433700000	554320000	280380000	273940000	886700000	544530000	342170000	917380000	486770000	430610000	700670000	313700000	386970000	52647	2578	49582	318039;318040;318041;318042;318043;318044;318045;318046;318047;318048;318049;318050;318051;318052;318053;318054	428160;428161;428162;428163;428164;428165;428166;428167;428168;428169;428170;428171;428172;428173;428174;428175;428176;428177;428178;428179;428180	428176			21	
TVQTDHNAVQR	0	Unmodified	1267.6269	0.62691165	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.21	3.3		9	4					1		2	3	5	4	7.2991	6.3232	2;3	1.9822E-46	5065	160511_QHF_FH_JSI10i_2	190.96	150.96			0.98501	0.97353	10.938	13	1	Median	1.217	1.024	9.6717	2	0	Median	0.81232	1.0092	17.962	2	1	Median	0.89794	0.90395	4.7693	5	0	Median	1.0327	1.0451	7.7701	4	0	Median	1893200000	905260000	987920000	277470000	118000000	159460000	421220000	232780000	188450000	613520000	266570000	346950000	580970000	287910000	293060000	52648	369	49583	318055;318056;318057;318058;318059;318060;318061;318062;318063;318064;318065;318066;318067;318068	428181;428182;428183;428184;428185;428186;428187;428188;428189;428190;428191;428192;428193;428194;428195;428196;428197;428198;428199;428200	428197			20	
TVQVEQSK	1	Unmodified	917.48181	0.48181054	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	9.7937	6.8747	2	0.00020515	6354	160511_QHF_FH_JSI10i_1	120.15	62.595			0.83096	0.9238	43.653	8	3	Median	0.68835	0.56791	NaN	1	0	Median	0.73776	0.87359	15.141	2	0	Median	0.78864	0.76157	73.111	3	2	Plateau	0.90543	0.95939	12.583	2	1	Median	3249700000	2007000000	1242600000	746600000	493510000	253090000	671510000	431590000	239920000	1126600000	619630000	507020000	704900000	462300000	242600000	52649	2725	49584	318069;318070;318071;318072;318073;318074;318075;318076	428201;428202;428203;428204;428205;428206;428207;428208;428209;428210	428206			10	
TVQVPVYSEQEYQLYLHDDAWTK	1	Unmodified	2811.3392	0.33917563	4900	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	87.279	86.498	3	0.00073945	76065	160511_QHF_FH_JSI11i_2	46.578	39.703			1.2021	1.2437	10.076	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3672	1.3355	NaN	1	1	Median	1.0569	1.1581	NaN	1	0	Median	29984000	12514000	17470000	0	0	0	0	0	0	10499000	3547300	6951700	19485000	8966700	10518000	52650	4900	49585	318077;318078	428211;428212;428213	428213			3	
TVQVSATEDGNVTK	1	Unmodified	1447.7155	0.71545188	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	26.218	25.647	2	1.3613E-05	22234	160511_QHF_FH_JSI9i_1	134.49	90.181			0.96015	0.91064	16.798	4	0	Median	1.1914	0.9814	NaN	1	0	Median	0.64445	0.74555	NaN	1	0	Median	1.1229	1.0936	NaN	1	0	Median	0.82099	0.84497	NaN	1	0	Median	322600000	138810000	183790000	111920000	36638000	75278000	86386000	50702000	35684000	52706000	17919000	34787000	71589000	33548000	38041000	52651	417	49586	318079;318080;318081;318082	428214;428215;428216;428217	428217			4	
TVQVVPHITDAIQEWVMR	0	Unmodified	2121.1041	0.1040945	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		101.19	101.07	3	1.024E-23	83636	160511_QHF_FH_JSI10i_3	179.95	166.11			0.85147	0.99841	15.874	3	0	Plateau	1.1167	0.89202	NaN	1	0	Median	0.85147	0.99841	NaN	1	0	Median	0.78718	0.72981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	483820000	253450000	230370000	156380000	70973000	85406000	215370000	113630000	101740000	112070000	68847000	43221000	0	0	0	52652	1126	49587	318083;318084;318085	428218;428219	428218			2	
TVQVVPHITDAVQEWVMNQAK	1	Unmodified	2392.2209	0.22091517	4951	Q9NRF8	CTPS2	CTP synthase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	100.96	100.81	3	3.224E-70	83416	160511_QHF_FH_JSI10i_3	264.66	252.85			0.72621	0.80866	5.2331	5	5	Median	1.009	0.8265	3.0858	2	2	Median	0.68386	0.79205	5.3204	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72621	0.74551	NaN	1	1	Median	713370000	388950000	324410000	196380000	94236000	102140000	384140000	211960000	172180000	0	0	0	132840000	82754000	50091000	52653	4951	49588	318086;318087;318088;318089;318090	428220;428221;428222;428223;428224;428225	428221			6	
TVSALGLDPSGAR	0	Unmodified	1242.6568	0.65681479	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		57.334	46.35	2	0.011069	26664	160513_QHF_FH_JSI11Kac_4	62.303	36.364			0.80791	0.79726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80791	0.79726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3278800	1780900	1497800	0	0	0	0	0	0	3278800	1780900	1497800	0	0	0	52654	5063	49589	318091	428226	428226			1	
TVSASSTGDLPK	1	Unmodified	1161.5877	0.58773217	2089	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.819	24.26	2	0.00032435	21554	160511_QHF_FH_JSI12i_1	72.652	34.566			1.0896	1.0156	25.336	4	2	Median	1.0412	0.86679	NaN	1	1	Median	1.1403	1.3003	NaN	1	1	Median	1.2398	1.1899	NaN	1	0	Median	0.72964	0.76312	NaN	1	0	Median	156600000	81750000	74853000	38175000	19631000	18545000	35050000	17122000	17928000	37505000	19331000	18175000	45872000	25666000	20206000	52655	2089	49590	318092;318093;318094;318095	428227;428228;428229;428230;428231	428229			5	
TVSDLIDQK	1	Unmodified	1017.5342	0.53424004	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.18	5	1				3	3			2	4	3	3	40.324	35.128	2	7.0865E-07	31626	160511_QHF_FH_JSI11i_1	137.13	92.683			1.6955	1.7599	57.195	12	9	Median	1.572	1.3013	118.86	2	2	Median	1.5415	1.8579	53.753	4	3	Median	1.8517	1.8346	54.417	3	2	Median	1.5525	1.6882	52.539	3	2	Median	3283000000	1420700000	1862200000	1064900000	344760000	720100000	804950000	422600000	382350000	802670000	359690000	442980000	610490000	293680000	316810000	52656	5494	49591	318096;318097;318098;318099;318100;318101;318102;318103;318104;318105;318106;318107	428232;428233;428234;428235;428236;428237;428238;428239;428240;428241;428242;428243;428244;428245;428246	428233			15	
TVSDSIKK	2	Unmodified	876.49165	0.49164694	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	8.3399	8.1888	2;3	0.0060917	5676	160511_QHF_FH_JSI12i_3	50.805	23.28			0.46185	0.47521	9.1767	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60599	0.56565	NaN	1	1	Median	0.47078	0.4841	2.621	2	2	Median	467340000	295210000	172120000	8830700	8830700	0	17391000	17391000	0	45169000	33122000	12047000	395940000	235870000	160080000	52657	5616	49592	318108;318109;318110;318111;318112	428247;428248;428249;428250;428251	428251			5	
TVSEVSEQPK	1	Unmodified	1102.5506	0.55061839	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.687	13.25	2	0.00019826	10609	160511_QHF_FH_JSI9i_1	81.95	54.696			0.85086	0.91078	21.916	4	2	Median	1.1248	0.91612	NaN	1	0	Median	0.85865	0.98077	NaN	1	1	Median	0.62354	0.60568	NaN	1	0	Median	0.84314	0.90548	NaN	1	1	Median	177880000	82888000	94988000	55791000	22021000	33770000	35537000	17879000	17658000	42800000	26311000	16490000	43748000	16678000	27070000	52658	5368	49593	318113;318114;318115;318116	428252;428253;428254;428255;428256	428256			5	
TVSFEALPIMR	0	Unmodified	1262.6693	0.66929373	243	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			83.349	82.708	2	0.00086697	73617	160511_QHF_FH_JSI10i_2	78.934	50.536			0.82303	1.0113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82303	1.0113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18937000	11145000	7792600	0	0	0	18937000	11145000	7792600	0	0	0	0	0	0	52659	243	49594	318117	428257	428257			1	
TVSFIMADEQLK	1	Unmodified	1380.6959	0.69590241	303	O43156	TTI1	TELO2-interacting protein 1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	69.715	69.116	2	4.2146E-05	60478	160511_QHF_FH_JSI11i_2	101.95	73.227			0.95614	0.96288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95614	0.96288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24652000	10258000	14394000	0	0	0	0	0	0	24652000	10258000	14394000	0	0	0	52660	303	49595	318118;318119	428258;428259	428259			2	
TVSGVNGPLVILDHVK	1	Unmodified	1646.9356	0.93555583	1189	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	78.432	77.841	2;3	3.6381E-11	69384	160511_QHF_FH_JSI11i_3	107.18	81.133			1.0048	0.97235	18.358	6	2	Median	1.0926	0.94032	NaN	1	0	Median	0.72964	0.89322	NaN	1	0	Median	1.0484	1.0185	19.399	2	1	Median	1.1399	1.1936	24.254	2	1	Median	496590000	227250000	269340000	44752000	14418000	30335000	72388000	44453000	27935000	167220000	75908000	91315000	212230000	92476000	119760000	52661	1189	49596	318120;318121;318122;318123;318124;318125;318126	428260;428261;428262;428263;428264;428265;428266;428267;428268;428269;428270	428261			11	
TVSHEAEVHAESLQQK	1	Unmodified	1791.8751	0.87514042	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	18.848	18.861	3;4	1.167E-10	15339	160511_QHF_FH_JSI12i_3	141.55	123.46			1.1049	1.0699	21.338	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3384	1.2615	28.516	2	1	Median	1.013	1.0257	11.176	2	0	Median	184080000	85609000	98471000	0	0	0	0	0	0	39717000	15818000	23899000	144360000	69792000	74572000	52662	2574	49597	318127;318128;318129;318130	428271;428272;428273;428274	428273			4	
TVSHLYQESISK	1	Unmodified	1390.7092	0.70924429	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.325	27.325	2;3	2.2234E-05	22996	160511_QHF_FH_JSI12i_3	89.171	69.9			1.9858	1.8614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9858	1.8614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37923000	14864000	23058000	0	0	0	0	0	0	37923000	14864000	23058000	0	0	0	52663	4584	49598	318131;318132	428275;428276	428276			2	
TVSLEKYK	2	Acetyl (K)	1008.5492	0.54916182	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		47.569	37.129	2	0.022338	21942	160513_QHF_FH_JSI11Kac_4	60.91	28.556			0.30296	0.29693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30296	0.29693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	14541000	11656000	2884900	0	0	0	0	0	0	14541000	11656000	2884900	0	0	0	52664	3733	49599	318133	428277	428277	2922		1	
TVSLGAGAK	1	Unmodified	802.45487	0.45486751	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	6.24	8	8	4			3	5	4	2	9	9	8	8	19.602	15.486	2	0.0002328	13463	160511_QHF_FH_JSI9i_3	84.568	36.394			0.88933	0.88305	48.939	27	14	Median	1.0472	0.87073	53.243	6	4	Median	0.81285	0.96795	58.09	6	3	Median	0.86021	0.85229	49.414	7	3	Median	0.84151	0.90578	48.033	8	4	Median	51662000000	27248000000	24414000000	8464600000	3801900000	4662700000	7647800000	4860100000	2787700000	18486000000	8977200000	9508700000	17064000000	9608300000	7455400000	52665	857	49600	318134;318135;318136;318137;318138;318139;318140;318141;318142;318143;318144;318145;318146;318147;318148;318149;318150;318151;318152;318153;318154;318155;318156;318157;318158;318159;318160;318161;318162;318163;318164;318165;318166;318167	428278;428279;428280;428281;428282;428283;428284;428285;428286;428287;428288;428289;428290;428291;428292;428293;428294;428295;428296;428297;428298;428299;428300;428301;428302;428303;428304;428305;428306;428307;428308;428309;428310;428311;428312;428313;428314;428315;428316;428317;428318;428319;428320;428321;428322;428323	428300			46	
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	Oxidation (M)	2944.4488	0.44880244	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		4	12							1	5	5	5	86.255	85.928	3;4	1.0852E-26	76644	160511_QHF_FH_JSI11i_3	139.16	136.88			0.84975	0.90215	21.202	16	7	Median	1.1432	0.96	NaN	1	0	Median	0.83082	1.0112	18.6	5	2	Median	1.0457	0.95977	12.99	5	2	Median	0.68257	0.69192	22.526	5	3	Median	1393900000	687730000	706150000	35433000	17957000	17476000	172560000	84711000	87846000	783310000	382420000	400890000	402580000	202640000	199940000	52666	857	49601	318168;318169;318170;318171;318172;318173;318174;318175;318176;318177;318178;318179;318180;318181;318182;318183	428324;428325;428326;428327;428328;428329;428330;428331;428332;428333;428334;428335;428336;428337;428338;428339;428340;428341;428342;428343;428344;428345;428346;428347;428348;428349	428325		391	26	
TVSLGAGAKDELHIVEAEAMNYEGSPIK	2	Unmodified	2928.4539	0.45388781	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.02		14	14						3	6	9	9	7	90.916	89.772	3;4;5	3.7759E-70	80679	160511_QHF_FH_JSI11i_3	221.5	207.04			1.045	1.0304	27.551	28	9	Median	1.1478	0.97039	33.745	6	2	Median	0.76921	0.91274	30.422	9	2	Median	1.2092	1.122	18.309	9	3	Median	0.75261	0.93214	22.873	4	2	Linear	10548000000	5487500000	5060100000	995270000	540820000	454450000	1605600000	950910000	654660000	6070600000	2956500000	3114100000	1876200000	1039300000	836940000	52667	857	49601	318184;318185;318186;318187;318188;318189;318190;318191;318192;318193;318194;318195;318196;318197;318198;318199;318200;318201;318202;318203;318204;318205;318206;318207;318208;318209;318210;318211;318212;318213;318214	428350;428351;428352;428353;428354;428355;428356;428357;428358;428359;428360;428361;428362;428363;428364;428365;428366;428367;428368;428369;428370;428371;428372;428373;428374;428375;428376;428377;428378;428379;428380;428381;428382;428383;428384;428385;428386;428387;428388;428389;428390;428391;428392;428393;428394;428395;428396;428397;428398;428399;428400;428401;428402;428403;428404;428405;428406;428407;428408;428409	428350			60	
TVSLLDENNVSSYLSK	1	Unmodified	1767.8891	0.88905915	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.831	4	3	3							2	4	2	2	80.225	79.539	2	4.112E-183	72440	160511_QHF_FH_JSI12i_1	312.34	287			1.1106	1.1073	40.812	10	6	Linear	0.92672	0.7775	14.015	2	1	Median	0.59503	0.70949	33.849	4	3	Median	0.96299	0.95328	7.5193	2	1	Median	0.5553	0.59577	94.119	2	1	Median	2695000000	1379500000	1315500000	605860000	282280000	323590000	770500000	455200000	315300000	873610000	398310000	475300000	444980000	243720000	201270000	52668	2094	49602	318215;318216;318217;318218;318219;318220;318221;318222;318223;318224	428410;428411;428412;428413;428414;428415;428416;428417;428418;428419;428420;428421;428422;428423;428424;428425	428415			16	
TVSLSQMLR	0	Unmodified	1033.559	0.559015	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			60.053	58.521	2	0.0073653	48991	160511_QHF_FH_JSI10i_3	53.493	12.464			1.001	0.97489	2.9476	2	0	Median	1.2135	0.99543	NaN	1	0	Median	0.82577	0.95478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90841000	45207000	45633000	45166000	17780000	27385000	45675000	27427000	18248000	0	0	0	0	0	0	52669	3420	49603	318225;318226	428426;428427;428428;428429	428427			4	
TVSLTPSPTTQVETPDLVDHDNTSPLFR	0	Unmodified	3066.5146	0.51457382	2228	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	86.261	85.693	3	9.9563E-10	76134	160511_QHF_FH_JSI10i_2	71.052	61.335			0.94235	0.87526	25.15	5	5	Median	0.94235	0.79682	NaN	1	1	Median	0.6795	0.87526	NaN	1	1	Median	0.80093	0.78149	NaN	1	1	Median	1.1593	1.2234	22.321	2	2	Median	50608000	29319000	21289000	10003000	7141300	2861600	12700000	10184000	2516100	10237000	7057400	3179200	17669000	4936400	12732000	52670	2228	49604	318227;318228;318229;318230;318231	428430;428431;428432;428433;428434;428435	428433			6	
TVSLWSLINSNK	1	Unmodified	1360.7351	0.73506511	2426	Q13496	MTM1	Myotubularin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				93.359	92.291	2	0.00084539	75511	160511_QHF_FH_JSI9i_3	67.334	56.576			0.88007	0.75247	NaN	1	0	Median	0.88007	0.75247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7659200	3157800	4501400	7659200	3157800	4501400	0	0	0	0	0	0	0	0	0	52671	2426	49605	318232	428436	428436			1	
TVSPALISR	0	Unmodified	942.54983	0.54983053	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.34	3	4	4					3		4	3	4	3	39.103	36.28	2	1.6815E-06	31816	160511_QHF_FH_JSI11i_3	130.75	57.709			1.131	0.87327	19.391	14	1	Linear	1.1496	0.97548	19.642	4	1	Linear	0.84024	0.98401	24.903	3	0	Median	0.90147	0.89033	20.63	4	0	Linear	0.98833	0.99867	12.79	3	0	Median	3351700000	1623200000	1728500000	470210000	204580000	265630000	735480000	382940000	352540000	1079200000	547110000	532120000	1066800000	488610000	578190000	52672	3343	49606	318233;318234;318235;318236;318237;318238;318239;318240;318241;318242;318243;318244;318245;318246	428437;428438;428439;428440;428441;428442;428443;428444;428445;428446;428447;428448;428449;428450;428451;428452;428453;428454;428455;428456;428457;428458;428459;428460	428437			24	
TVSPDRLELEAAQK	1	Unmodified	1555.8206	0.82058566	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.08		8	4					3		3	2	5	5	43.568	40.918	2;3	2.2318E-06	35790	160511_QHF_FH_JSI11i_3	142.83	106.87			0.9767	1.0354	12.707	15	1	Median	1.1847	0.98401	6.2358	3	1	Plateau	0.84473	1.0349	4.9678	2	0	Median	1.0794	1.0443	11.793	5	0	Median	0.81845	0.9368	16.191	5	0	Median	8941000000	4771200000	4169700000	1286200000	635870000	650350000	1470200000	820050000	650150000	3606500000	1910600000	1696000000	2578000000	1404700000	1173300000	52673	2585	49607	318247;318248;318249;318250;318251;318252;318253;318254;318255;318256;318257;318258;318259;318260;318261	428461;428462;428463;428464;428465;428466;428467;428468;428469;428470;428471;428472;428473;428474;428475;428476;428477;428478;428479;428480;428481;428482	428463			22	
TVSQIISLQTLK	1	Unmodified	1329.7868	0.78676633	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.21	6.38	2	4	4				3	4	2	4	5	7	3	74.128	69.54	2	3.3219E-12	35974	160513_QHF_FH_JSI11Kac_5	125.97	102.6			0.92499	0.93625	14.812	17	2	Median	1.0648	0.91282	20.456	4	0	Median	0.77637	0.93173	6.5843	4	0	Median	1.0246	0.99368	13.938	6	1	Median	0.97133	1.0468	18.096	3	1	Plateau	1263600000	638440000	625110000	217230000	103640000	113600000	271410000	162550000	108860000	469330000	232040000	237290000	305580000	140220000	165360000	52674	596	49608	318262;318263;318264;318265;318266;318267;318268;318269;318270;318271;318272;318273;318274;318275;318276;318277;318278;318279;318280	428483;428484;428485;428486;428487;428488;428489;428490;428491;428492;428493;428494;428495;428496;428497;428498;428499;428500;428501;428502;428503;428504;428505;428506;428507;428508;428509	428501			25	
TVSQIISLQTLKK	2	Unmodified	1457.8817	0.88172935	596	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	3	4	1	1	62.241	60.027	2;3	8.8193E-10	50234	160511_QHF_FH_JSI10i_3	104.55	99.658			0.54918	0.57843	30.932	5	5	Median	0.73252	0.57843	NaN	1	1	Median	0.60503	0.70293	27.335	2	2	Median	0.54918	0.53001	NaN	1	1	Median	0.34554	0.35782	NaN	1	1	Median	526410000	326230000	200180000	166880000	85914000	80963000	165150000	109620000	55528000	171870000	110820000	61050000	22508000	19869000	2638700	52675	596	49609	318281;318282;318283;318284;318285;318286;318287;318288;318289	428510;428511;428512;428513;428514;428515;428516;428517;428518	428513			9	
TVSSEDVAEMHNILK	1	Unmodified	1671.8138	0.81378572	2088	P78356	PIP4K2B	Phosphatidylinositol 5-phosphate 4-kinase type-2 beta	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	57.566	56.616	3	1.636E-05	48524	160511_QHF_FH_JSI12i_2	94.461	83.416			0.94522	1.0198	11.525	3	0	Plateau	1.2004	1.0198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89898	0.92945	NaN	1	0	Median	1.0556	1.1688	NaN	1	0	Median	196670000	94288000	102390000	29734000	16652000	13081000	0	0	0	92642000	42986000	49657000	74298000	34650000	39648000	52676	2088	49610	318290;318291;318292	428519;428520;428521	428520			3	
TVSSHEVFLQR	0	Unmodified	1301.6728	0.67279921	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	1	3	3	29.733	29.435	2;3	4.1059E-07	24601	160511_QHF_FH_JSI12i_3	117.53	82.088			1.0971	1.2487	33.181	7	5	Median	1.4286	1.2487	NaN	1	1	Median	1.0971	1.3384	NaN	1	0	Median	1.7348	1.6459	46.379	3	3	Median	0.89778	0.91616	17.568	2	1	Median	629290000	281750000	347530000	18823000	6658400	12165000	27071000	14828000	12243000	296160000	119390000	176760000	287230000	140870000	146360000	52677	5687	49611	318293;318294;318295;318296;318297;318298;318299;318300;318301	428522;428523;428524;428525;428526;428527;428528;428529;428530	428528			9	
TVSSSNGGESSSR	0	Unmodified	1253.5484	0.54838655	3793	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				2	3	2	2	4.9989	-0.34576	2	5.6277E-22	2359	160511_QHF_FH_JSI12i_1	171.67	104.5			1.1226	1.017	27.717	9	0	Median	1.3064	0.67279	44.132	2	0	Median	0.86262	1.017	4.774	3	0	Median	1.0844	1.0567	7.4646	2	0	Median	1.1738	1.2337	1.0966	2	0	Median	1907400000	987040000	920380000	190620000	89765000	100850000	540490000	301850000	238650000	585680000	325470000	260220000	590620000	269960000	320660000	52678	3793	49612	318302;318303;318304;318305;318306;318307;318308;318309;318310	428531;428532;428533;428534;428535;428536;428537;428538;428539;428540;428541;428542;428543;428544;428545;428546	428532			16	
TVSVGLTLLR	0	Unmodified	1057.6495	0.64954457	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	71.802	70.725	2	0.010842	59314	160511_QHF_FH_JSI10i_3	47.198	20.596			0.77403	0.76224	1.2143	3	0	Median	0.90815	0.75699	NaN	1	0	Median	0.69498	0.77508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77403	0.76224	NaN	1	0	Median	67501000	36115000	31386000	18937000	8786300	10150000	21062000	12623000	8439600	0	0	0	27502000	14706000	12796000	52679	3734	49613	318311;318312;318313	428547	428547			1	
TVSVLNGGFR	0	Unmodified	1048.5665	0.56654322	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	48.52	47.381	2	0.00010742	39633	160511_QHF_FH_JSI10i_3	84.743	44.64			1.2038	1.2136	12.14	3	0	Median	1.5387	1.2453	NaN	1	0	Median	0.85445	0.99736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2038	1.2136	NaN	1	0	Median	224380000	105870000	118510000	64396000	26029000	38366000	76284000	36363000	39921000	0	0	0	83704000	43480000	40224000	52680	2760	49614	318314;318315;318316	428548;428549;428550;428551;428552	428549			5	
TVSVSEAIK	1	Unmodified	932.51786	0.51786169	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	31.752	31.002	2	0.0012609	26187	160511_QHF_FH_JSI12i_2	69.825	18.479			0.89173	0.95815	15.542	6	0	Median	0.88731	0.74456	NaN	1	0	Median	0.84044	1.0354	NaN	1	0	Median	1.0799	1.0846	11.558	2	0	Median	0.83864	0.90364	2.3119	2	0	Median	458580000	270820000	187750000	74862000	44088000	30775000	46298000	26890000	19408000	196890000	119070000	77818000	140530000	80777000	59752000	52681	1085	49615	318317;318318;318319;318320;318321;318322	428553;428554;428555;428556;428557;428558	428553			6	
TVSVSEAIKK	2	Unmodified	1060.6128	0.61282471	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.81	5.32		3	9					4		3	3	5	5	27.299	24.436	2;3	2.6719E-05	20126	160511_QHF_FH_JSI10i_3	84.658	65.415			1.0529	1.2197	123.96	15	14	Median	3.2903	2.8164	120.04	3	3	Plateau	1.0529	1.2197	142.9	3	2	Median	1.2653	1.1991	124.57	4	4	Median	0.61019	0.66268	154.47	5	5	Median	3044200000	1187500000	1856700000	180510000	71074000	109440000	217900000	91420000	126480000	934960000	323140000	611820000	1710900000	701910000	1008900000	52682	1085	49616	318323;318324;318325;318326;318327;318328;318329;318330;318331;318332;318333;318334;318335;318336;318337;318338	428559;428560;428561;428562;428563;428564;428565;428566;428567;428568;428569;428570;428571;428572;428573;428574;428575;428576	428562			18	
TVSYLGLE	0	Unmodified	880.4542	0.45419881	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	64.102	63.474	1;2	0.0085564	57605	160511_QHF_FH_JSI11i_1	64.803	50.028			0.89183	0.88103	12.246	5	1	Median	1.0808	0.90171	NaN	1	0	Median	0.75696	0.88103	NaN	1	0	Median	0.89183	0.85448	NaN	1	0	Median	0.79815	0.82099	23.014	2	1	Median	615110000	327080000	288030000	144220000	66625000	77594000	137880000	88437000	49445000	151910000	77137000	74775000	181100000	94884000	86213000	52683	112	49617	318339;318340;318341;318342;318343;318344	428577;428578;428579;428580;428581	428577			2	
TVSYNILADTYAQTEFSR	0	Unmodified	2077.9956	0.99564949	3064	Q6L8Q7	PDE12	2',5'-phosphodiesterase 12	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.587	85.56	2	0.00010545	73965	160511_QHF_FH_JSI12i_2	111.39	98.827			0.73788	0.82738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73788	0.82738	NaN	1	1	Median	9124200	6521200	2603000	0	0	0	0	0	0	0	0	0	9124200	6521200	2603000	52684	3064	49618	318345	428582	428582			1	
TVTAAGAENIQQK	1	Unmodified	1329.6888	0.6888432	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	1	3	2	24.18	21.475	2	4.161E-53	18886	160511_QHF_FH_JSI12i_1	220.94	151.12			0.97281	0.93445	36.064	7	2	Median	0.98224	0.8053	NaN	1	0	Median	0.81706	0.95464	NaN	1	0	Median	0.97281	0.93445	56.837	3	2	Median	1.0293	1.083	27.266	2	0	Median	466750000	228610000	238140000	106750000	44744000	62004000	91630000	47334000	44295000	168350000	84232000	84114000	100030000	52301000	47726000	52685	2789	49619	318346;318347;318348;318349;318350;318351;318352	428583;428584;428585;428586;428587;428588	428585			6	
TVTAEVQPQCGR	0	Unmodified	1344.6456	0.64559818	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.797	20.305	2	0.00011601	17720	160511_QHF_FH_JSI12i_1	86.898	67.627			0.81559	0.83831	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81559	0.83831	NaN	1	0	Median	34356000	18358000	15999000	0	0	0	0	0	0	0	0	0	34356000	18358000	15999000	52686	2806	49620	318353	428589	428589			1	
TVTAMDVVYALK	1	Unmodified	1309.6952	0.69517413	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.4	3	9	4				1	4	4	5	6	7	7	84.943	80.855	2;3	3.507E-31	73344	160511_QHF_FH_JSI12i_2	185.29	120.46			1.233	1.0944	46.81	24	3	Median	1.3596	1.1165	6.305	5	0	Median	1.4818	1.758	15.493	6	1	Median	1.0278	1.0009	54.694	7	1	Median	0.89698	0.97568	47.646	6	1	Median	5122800000	2332500000	2790300000	860270000	401010000	459260000	1318200000	536310000	781920000	1845900000	836940000	1009000000	1098400000	558230000	540130000	52687	2019	49621	318354;318355;318356;318357;318358;318359;318360;318361;318362;318363;318364;318365;318366;318367;318368;318369;318370;318371;318372;318373;318374;318375;318376;318377;318378	428590;428591;428592;428593;428594;428595;428596;428597;428598;428599;428600;428601;428602;428603;428604;428605;428606;428607;428608;428609;428610;428611;428612;428613;428614;428615;428616;428617;428618;428619;428620;428621;428622;428623;428624;428625;428626;428627;428628;428629;428630;428631;428632;428633;428634;428635	428595			46	
TVTAMDVVYALK	1	Oxidation (M)	1325.6901	0.69008876	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.481							4	7		2	3	4	2	76.494	65.91	2	7.1054E-06	34166	160513_QHF_FH_JSI9Kac_5	102.52	82.194			0.98623	1.1129	28.755	11	1	Median	0.77638	0.65252	9.3126	2	1	Median	1.0602	1.2603	14.255	3	0	Median	0.75634	0.74836	23.417	4	0	Linear	0.92501	1.0111	13.569	2	0	Median	120770000	57338000	63429000	23653000	13513000	10140000	43710000	17522000	26188000	38822000	19464000	19357000	14582000	6838100	7743700	52688	2019	49621	318379;318380;318381;318382;318383;318384;318385;318386;318387;318388;318389	428636;428637;428638;428639;428640;428641;428642;428643;428644;428645;428646	428636		1678	11	
TVTAMDVVYALKR	1	Unmodified	1465.7963	0.79628516	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			77.303	75.894	3	4.8869E-05	62339	160511_QHF_FH_JSI9i_3	80.522	75.673			0.65158	0.63851	11.504	2	1	Median	0.71248	0.58863	NaN	1	0	Median	0.59588	0.69262	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38604000	24983000	13621000	28100000	19714000	8385900	10504000	5268500	5235500	0	0	0	0	0	0	52689	2019	49622	318390;318391	428647;428648;428649	428649			3	
TVTATFGYPFR	0	Unmodified	1258.6346	0.63462279	2740	Q16563	SYPL1	Synaptophysin-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.65	6.48		4	5					4	4	5	4	4	4	70.883	65.863	2	5.8703E-27	34169	160513_QHF_FH_JSI12Kac_6	182.76	152.6			1.1088	1.0735	17.543	17	2	Median	1.3154	1.1148	9.8899	5	2	Median	0.90458	1.053	11.535	4	0	Median	1.1837	1.1227	32.58	4	0	Median	1.01	1.0727	8.5377	4	0	Median	2778900000	1340700000	1438200000	528020000	201710000	326310000	703940000	385130000	318820000	767760000	371340000	396420000	779210000	382520000	396700000	52690	2740	49623	318392;318393;318394;318395;318396;318397;318398;318399;318400;318401;318402;318403;318404;318405;318406;318407;318408	428650;428651;428652;428653;428654;428655;428656;428657;428658;428659;428660;428661;428662;428663;428664;428665;428666;428667;428668;428669;428670;428671;428672;428673;428674;428675;428676;428677;428678;428679	428677			30	
TVTDMLMTICAR	0	Unmodified	1410.6669	0.66692725	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.759	73.129	2	8.6181E-06	64134	160511_QHF_FH_JSI11i_2	97.456	80.02			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52691	5616	49624	318409	428680	428680			1	
TVTEIDEK	1	Unmodified	933.46549	0.46549177	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	18.787	16.082	2	3.0724E-14	13316	160511_QHF_FH_JSI9i_1	150.4	73.552			1.3603	1.3805	53.942	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94517	0.92743	74.964	2	2	Median	1.0401	1.1027	NaN	1	1	Median	1462300000	792840000	669420000	0	0	0	0	0	0	724140000	339020000	385120000	738120000	453820000	284300000	52692	1950	49625	318410;318411;318412;318413;318414	428681;428682;428683;428684;428685	428685			5	
TVTEYKIDEDGK	2	Acetyl (K)	1438.6828	0.68275477	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		47.401	38.015	2	0.020113	21197	160513_QHF_FH_JSI11Kac_3	72.006	52.735			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52693	570	49626	318415	428686	428686	295		1	
TVTFANDLKPK	2	Unmodified	1232.6765	0.6764876	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	39.669	39.473	3	4.3527E-06	33514	160511_QHF_FH_JSI12i_3	107.34	96.438			0.65528	0.65606	158.52	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65528	0.65606	158.52	2	2	Median	318240000	167010000	151230000	0	0	0	0	0	0	0	0	0	318240000	167010000	151230000	52694	3203	49627	318416;318417	428687;428688	428687			2	
TVTFSKL	1	Unmodified	794.4538	0.45380487	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	42.029	41.406	2	0.014161	36149	160511_QHF_FH_JSI11i_3	67.032	14.349			1.2476	1.0581	21.993	5	0	Median	1.2476	1.0581	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2315	1.216	30.465	2	0	Median	1.1306	1.2002	29.403	2	0	Median	983070000	464180000	518890000	139520000	62802000	76718000	0	0	0	357790000	182700000	175090000	485760000	218680000	267080000	52695	2340	49628	318418;318419;318420;318421;318422	428689;428690;428691;428692;428693;428694	428690			6	
TVTFSKL	1	Acetyl (K)	836.46437	0.46436956	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			75.488	66.991	2	0.0058081	32750	160513_QHF_FH_JSI10Kac_3	99.919	89.613			0.044653	0.052065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.044653	0.052065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5880200	5741200	139040	0	0	0	5880200	5741200	139040	0	0	0	0	0	0	52696	2340	49628	318423	428695	428695	2428		1	
TVTGAKPLK	2	Acetyl (K)	955.57023	0.57023162	2577	Q14807	KIF22	Kinesin-like protein KIF22	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.342	23.157	2	0.025646	14641	160513_QHF_FH_JSI11Kac_4	49.418	23.681			1.4134	1.4044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4134	1.4044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4327500	2191700	2135800	0	0	0	0	0	0	4327500	2191700	2135800	0	0	0	52697	2577	49629	318424	428696	428696	2547		1	
TVTIPTQPYQDIVTALK	1	Unmodified	1887.0353	0.035329459	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	98.646	98.478	2	0.00045817	89244	160511_QHF_FH_JSI12i_1	64.439	44.78			0.77418	0.78292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77418	0.78292	NaN	1	0	Median	17916000	9554900	8361400	0	0	0	0	0	0	0	0	0	17916000	9554900	8361400	52698	3282	49630	318425;318426;318427	428697;428698;428699	428699			3	
TVTISQVSDNK	1	Unmodified	1190.6143	0.61428128	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.974	27.262	2	6.0545E-09	24094	160511_QHF_FH_JSI11i_1	121.5	78.633			2.0475	1.9213	18.648	3	3	Median	2.0475	1.7345	NaN	1	1	Median	1.7315	1.9213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4649	2.4904	NaN	1	1	Median	77930000	27537000	50393000	29688000	8876400	20812000	19762000	7562000	12200000	0	0	0	28479000	11099000	17380000	52699	3982	49631	318428;318429;318430;318431	428700;428701;428702;428703	428700			4	
TVTIVVR	0	Unmodified	786.49634	0.49633839	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.55	6.27	2	4	3		1	1	3	4	4	3	8	6	5	38.164	32.239	2	1.4233E-33	17990	160513_QHF_FH_JSI10Kac_6	195.98	92.695			0.92649	0.56838	33.322	22	1	Linear	0.77358	0.66299	25.419	3	0	Plateau	0.83238	0.96134	13.701	8	1	Median	1.1164	1.0992	57.639	6	0	Median	0.94076	0.95857	10.358	5	0	Median	6716400000	3438000000	3278400000	1207700000	585200000	622520000	2264900000	1255800000	1009200000	1925400000	924790000	1000600000	1318400000	672280000	646120000	52700	1722	49632	318432;318433;318434;318435;318436;318437;318438;318439;318440;318441;318442;318443;318444;318445;318446;318447;318448;318449;318450;318451;318452;318453	428704;428705;428706;428707;428708;428709;428710;428711;428712;428713;428714;428715;428716;428717;428718;428719;428720;428721;428722;428723;428724;428725;428726;428727;428728;428729;428730;428731;428732;428733;428734;428735;428736;428737;428738;428739;428740;428741;428742;428743	428743			40	
TVTLGGDVFDPHGTLSGGAR	0	Unmodified	1955.9701	0.97010344	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	66.953	66.077	2;3	4.594E-19	57652	160511_QHF_FH_JSI11i_2	198.74	185.76			1.0493	1.076	9.6483	10	0	Median	1.2276	1.029	9.1714	2	0	Median	0.91376	1.1061	22.091	2	0	Median	1.0392	0.97332	5.3913	3	0	Plateau	1.0484	1.1338	3.0982	3	0	Median	1552700000	762920000	789770000	220770000	80837000	139940000	339490000	184010000	155480000	596770000	300270000	296500000	395660000	197800000	197860000	52701	679	49633	318454;318455;318456;318457;318458;318459;318460;318461;318462;318463	428744;428745;428746;428747;428748;428749;428750;428751;428752;428753;428754;428755;428756;428757;428758;428759;428760	428757			16	
TVTLKEDPGKV	2	Acetyl (K)	1227.6711	0.67106787	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	1	0	0	2				By MS/MS	13	0						1							1	53.862	44.722	2	0.016853	23991	160513_QHF_FH_JSI12Kac_3	61.65	38.221			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52702	1609	49634	318464	428761	428761	1636		1	
TVTLPENEDELESTNR	0	Unmodified	1845.8592	0.85921559	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			51.217	50.802	2	6.9642E-05	45765	160511_QHF_FH_JSI10i_1	78.692	61.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52703	1366	49635	318465	428762	428762			1	
TVTLPENEDELESTNRR	0	Unmodified	2001.9603	0.96032661	1366	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	yes	yes	0	0	0	1			By MS/MS		2	1	1		1									2		44.061	43.865	3	2.9384E-05	38601	160511_QHF_FH_JSI11i_3	78.285	68.29			0.84935	0.80875	12.984	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84935	0.80875	12.984	2	1	Median	NaN	NaN	NaN	0	0	Median	81649000	46260000	35389000	0	0	0	0	0	0	81649000	46260000	35389000	0	0	0	52704	1366	49636	318466;318467	428763;428764	428763			2	
TVTLVEAIK	1	Unmodified	972.58555	0.58554733	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.33	1	4					2	2		1	2	3	3	58.917	53.659	2	3.5787E-05	45898	160511_QHF_FH_JSI12i_2	99.802	58.15			0.88261	1.0012	45.265	9	0	Median	1.3296	1.1466	NaN	1	0	Median	0.56122	0.67446	66.575	2	0	Median	0.99762	1.0012	21.275	3	0	Median	0.99422	1.1321	61.32	3	0	Plateau	276910000	142560000	134350000	49054000	23874000	25180000	50854000	29009000	21845000	106300000	54145000	52154000	70703000	35531000	35172000	52705	4856	49637	318468;318469;318470;318471;318472;318473;318474;318475;318476	428765;428766;428767;428768;428769	428765			5	
TVTNAVVTVPAYFNDSQR	0	Unmodified	1980.9905	0.99050453	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.17	8	8	4				2	3		6	7	7	5	73.367	70.678	2;3	7.5026E-138	64923	160511_QHF_FH_JSI11i_1	330.9	307.05			1.0645	1.0841	11.07	25	3	Median	1.2341	1.0265	8.2274	6	0	Median	0.87962	1.0553	12.94	7	1	Median	1.1346	1.0958	12.049	7	2	Median	1.0528	1.1573	2.4964	5	0	Median	18158000000	8699500000	9458900000	3367300000	1442400000	1924900000	4588200000	2483000000	2105200000	4971700000	2224900000	2746800000	5231200000	2549200000	2682100000	52706	985	49638	318477;318478;318479;318480;318481;318482;318483;318484;318485;318486;318487;318488;318489;318490;318491;318492;318493;318494;318495;318496;318497;318498;318499;318500;318501	428770;428771;428772;428773;428774;428775;428776;428777;428778;428779;428780;428781;428782;428783;428784;428785;428786;428787;428788;428789;428790;428791;428792;428793;428794;428795;428796;428797;428798;428799;428800;428801;428802;428803;428804;428805;428806;428807;428808;428809;428810;428811;428812;428813;428814;428815;428816;428817;428818;428819;428820;428821	428774			52	
TVTNAVVTVPAYFNDSQRQATK	1	Unmodified	2409.2288	0.22883732	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		3	3							2	2		2	64.531	63.557	3	4.1152E-18	56276	160511_QHF_FH_JSI10i_2	135.86	112.69			0.31308	0.31815	134.92	5	5	Median	3.7219	3.3638	NaN	1	1	Median	0.1063	0.12502	17.803	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31463	0.32692	3.8467	2	2	Median	260060000	202880000	57177000	47779000	12409000	35370000	137170000	129440000	7730800	0	0	0	75113000	61037000	14076000	52707	985	49639	318502;318503;318504;318505;318506;318507	428822;428823;428824;428825;428826;428827;428828	428827			7	
TVTPAKAVTTPGK	2	Acetyl (K)	1311.7398	0.73981614	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.8	0.4					1	4					1	1	3	43.959	35.009	2;3	0.0098707	16326	160513_QHF_FH_JSI12Kac_2	57.348	30.234			0.91797	1.0121	59.066	5	1	Median	NaN	NaN	NaN	0	0	Median	0.9154	1.071	NaN	1	0	Median	1.0098	0.9771	NaN	1	0	Median	0.82647	0.90453	77.975	3	1	Plateau	19056000	8848000	10208000	0	0	0	5589200	2648900	2940300	3084200	1577300	1506900	10383000	4621800	5761100	52708	1154	49640	318508;318509;318510;318511;318512	428829;428830;428831;428832;428833	428833	1023		5	
TVTPAKAVTTPGKK	3	Acetyl (K)	1439.8348	0.83477916	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	2	By MS/MS	By MS/MS		By MS/MS	14.7	0.471							2	4		1	3		2	36.585	27.033	3	0.0018718	14619	160513_QHF_FH_JSI12Kac_5	78.814	64.784			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5173100	5173100	0	0	0	0	3139200	3139200	0	0	0	0	2033900	2033900	0	52709	1154	49641	318513;318514;318515;318516;318517;318518	428834;428835;428836;428837;428838;428839	428837	1017;1023		6	
TVTPALSSNVLPR	0	Unmodified	1353.7616	0.76161421	4587	Q9C0E8	LNP	Protein lunapark	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	58.697	58.128	2	0.024123	51260	160511_QHF_FH_JSI10i_2	41.54	28.584			1.5063	1.7043	38.806	2	0	Median	NaN	NaN	NaN	0	0	Median	1.8239	2.2425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.244	1.2953	NaN	1	0	Median	48663000	15365000	33299000	0	0	0	34291000	10413000	23878000	0	0	0	14372000	4951900	9420200	52710	4587	49642	318519;318520	428840;428841	428840			1	
TVTPASSAK	1	Unmodified	860.46035	0.46034682	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	7.8184	6.0847	2	0.0020756	4778	160511_QHF_FH_JSI9i_1	66.27	14.483			1.0886	1.1653	15.489	5	0	Median	1.4964	1.2396	NaN	1	0	Median	0.88528	1.0497	NaN	1	0	Median	1.2541	1.2151	27.94	2	0	Median	1.0886	1.1653	NaN	1	0	Median	1719900000	712710000	1007200000	500420000	179060000	321360000	478020000	240700000	237320000	370680000	145320000	225360000	370760000	147630000	223130000	52711	2739	49643	318521;318522;318523;318524;318525	428842;428843;428844;428845;428846;428847	428847			5	
TVTPDASVYSDIVGK	1	Unmodified	1550.7828	0.78280317	5406	Q9ULP9	TBC1D24	TBC1 domain family member 24	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	65.628	64.926	2	0.00013296	57727	160511_QHF_FH_JSI9i_1	96.82	61.933			1.141	0.92995	27.929	3	2	Plateau	1.141	0.92995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62945	0.60331	NaN	1	1	Median	0.98681	1.0171	NaN	1	1	Median	134140000	76094000	58050000	34740000	17884000	16856000	0	0	0	47628000	27608000	20019000	51777000	30602000	21175000	52712	5406	49644	318526;318527;318528	428848;428849;428850;428851	428851			4	
TVTQLVAEDGSR	0	Unmodified	1274.6466	0.64664404	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	31.576	30.999	2	8.3104E-05	27736	160511_QHF_FH_JSI11i_1	105.13	83.283			0.67158	0.67386	50.847	4	4	Median	1.2193	1.0094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.43966	0.4337	50.587	2	2	Median	0.71871	0.73216	NaN	1	1	Median	399840000	241240000	158600000	85253000	38491000	46762000	0	0	0	227810000	145220000	82587000	86772000	57521000	29250000	52713	4721	49645	318529;318530;318531;318532	428852;428853;428854;428855	428853			4	
TVTSATIVYHLAR	0	Unmodified	1430.7882	0.78816332	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	3.7			1					2	8	4	3	2	2	59.651	50.805	2;3	2.9035E-76	27761	160513_QHF_FH_JSI10Kac_6	267.24	208.87			1.1056	1.0415	34.549	11	1	Median	1.2251	1.0483	56.418	4	0	Median	0.88033	1.0331	9.1609	3	1	Plateau	1.1059	1.0614	2.6855	2	0	Median	1.0543	1.1295	9.255	2	0	Median	2199100000	1108600000	1090600000	566680000	270370000	296310000	1118500000	559880000	558640000	385180000	203700000	181480000	128760000	74603000	54152000	52714	3904	49646	318533;318534;318535;318536;318537;318538;318539;318540;318541;318542;318543	428856;428857;428858;428859;428860;428861;428862;428863;428864;428865;428866;428867;428868;428869;428870;428871;428872;428873;428874	428872			18	
TVTSFYNQSAIDAAAEK	1	Unmodified	1814.8687	0.86865806	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			58.295	57.902	2	6.4298E-06	52326	160511_QHF_FH_JSI10i_1	110.44	65.158			0.92275	1.0668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92275	1.0668	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27300000	9324800	17976000	0	0	0	27300000	9324800	17976000	0	0	0	0	0	0	52715	212	49647	318544	428875;428876	428876			2	
TVVAEYAIALAQK	1	Unmodified	1375.7711	0.77111627	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.573	74.718	2	5.5202E-06	65971	160511_QHF_FH_JSI9i_2	120.06	109.69			1.2562	1.4035	50.211	4	3	Linear	2.9143	2.5459	NaN	1	1	Median	1.0226	1.2661	NaN	1	0	Median	1.888	1.8811	NaN	1	1	Median	3.9203	4.1624	NaN	1	1	Median	88286000	32179000	56107000	18895000	4605500	14290000	24604000	14166000	10438000	31771000	9926700	21844000	13016000	3480900	9535500	52716	2677	49648	318545;318546;318547;318548	428877;428878;428879;428880;428881;428882	428878			6	
TVVAGSSDAAQK	1	Unmodified	1132.5724	0.57241646	739	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		7	6	1					1				1		1		13.321	9.245	2	2.9224E-05	8164	160511_QHF_FH_JSI9i_1	107.55	80.417			1.3999	1.2443	51.996	2	1	Median	1.0453	0.86146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.8747	1.7972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115360000	58125000	57237000	112100000	56782000	55316000	0	0	0	3263500	1342600	1920800	0	0	0	52717	739	49649	318549;318550	428883;428884;428885	428885			3	
TVVAPMLDSR	0	Unmodified	1087.5696	0.56957969	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	48.822	47.972	2	0.00036493	41985	160511_QHF_FH_JSI9i_2	76.827	61.165			0.74952	0.78892	35.787	4	1	Median	0.69657	0.59288	NaN	1	0	Median	1.1977	1.3919	NaN	1	1	Median	0.78778	0.79643	NaN	1	0	Median	0.71311	0.78148	NaN	1	0	Median	787500000	433660000	353830000	145670000	81788000	63881000	149510000	73084000	76430000	268240000	144290000	123950000	224070000	134500000	89573000	52718	3593	49650	318551;318552;318553;318554	428886;428887;428888;428889;428890;428891;428892	428890			7	
TVVAPSAVAGK	1	Unmodified	998.57605	0.57604528	5086	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.58	4	3	2			1	1			3	3	3	2	31.957	29.604	2	3.7567E-05	26599	160511_QHF_FH_JSI12i_1	97.565	69.391			0.8581	0.82787	15.656	11	4	Median	1.022	0.8599	9.781	3	1	Median	0.713	0.82787	22.029	3	1	Median	0.84352	0.81536	18.157	3	1	Median	0.75859	0.812	18.923	2	1	Median	2929400000	1438200000	1491300000	664240000	249910000	414330000	765920000	446350000	319570000	726140000	347550000	378590000	773120000	394360000	378770000	52719	5086	49651	318555;318556;318557;318558;318559;318560;318561;318562;318563;318564;318565	428893;428894;428895;428896;428897;428898;428899;428900;428901;428902;428903	428895			8	
TVVEALFQR	0	Unmodified	1061.5869	0.58694431	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	57.917	57.321	2	9.0874E-06	50722	160511_QHF_FH_JSI10i_2	107.01	61.672			1.0662	1.1313	8.2243	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0662	1.2057	NaN	1	0	Median	1.1778	1.1313	NaN	1	0	Median	1.0143	1.0242	NaN	1	0	Median	446260000	219370000	226890000	0	0	0	39108000	19054000	20054000	242760000	118840000	123920000	164400000	81478000	82918000	52720	1895	49652	318566;318567;318568;318569	428904;428905;428906;428907;428908;428909	428907			6	
TVVFDSMR	0	Unmodified	953.46405	0.46405199	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.25	40.784	2	0.018015	35028	160511_QHF_FH_JSI11i_2	46.129	24.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52721	2677	49653	318570	428910	428910			1	
TVVGQITVDMMYGGMR	0	Unmodified	1756.831	0.83103246	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							2	2	3	3	85.136	84.559	2;3	2.7046E-10	74337	160511_QHF_FH_JSI11i_2	190.78	164.37			0.96856	0.96514	12.89	10	1	Median	1.0546	0.90537	6.0533	2	0	Median	0.7891	0.94511	4.0848	2	0	Median	1.0515	1.0432	7.3146	3	1	Median	0.89352	0.99551	20.139	3	0	Median	583590000	286810000	296780000	96206000	38109000	58097000	92054000	58357000	33696000	247220000	123810000	123410000	148110000	66536000	81573000	52722	517	49654	318571;318572;318573;318574;318575;318576;318577;318578;318579;318580	428911;428912;428913;428914;428915;428916;428917;428918;428919;428920;428921;428922;428923	428919			13	
TVVLGDLLIDDK	1	Unmodified	1299.7286	0.72858275	3703	Q8TCD5	NT5C	5'(3')-deoxyribonucleotidase, cytosolic type	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.379	54.832	3	0.056128	45837	160511_QHF_FH_JSI10i_3	24.071	3.105			49.92	58.263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49.92	58.263	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	233710000	5736400	227970000	0	0	0	233710000	5736400	227970000	0	0	0	0	0	0	52723	3703	49655	318581	428924	428924			1	
TVVLPPIVASR	0	Unmodified	1150.7074	0.7073938	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.541	71.255	2	0.00036898	61482	160511_QHF_FH_JSI12i_2	73.233	3.635			0.91089	0.99777	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91089	0.99777	NaN	1	0	Median	45500000	21201000	24299000	0	0	0	0	0	0	0	0	0	45500000	21201000	24299000	52724	484	49656	318582	428925	428925			1	
TVVNISSLCALQPFK	1	Unmodified	1675.8967	0.89672749	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		9	3							3	2	4	3	95.805	95.571	2;3	1.3214E-06	85038	160511_QHF_FH_JSI11i_3	160.15	134.11			0.70081	0.75615	30.972	11	1	Median	0.93592	0.8199	48.672	2	1	Median	0.63626	0.79268	13.814	2	0	Median	0.72469	0.69737	23.169	4	0	Median	1.0404	1.1353	35.873	3	0	Median	230990000	120410000	110580000	18970000	10684000	8286100	30432000	16034000	14397000	111180000	59748000	51435000	70402000	33940000	36462000	52725	1433	49657	318583;318584;318585;318586;318587;318588;318589;318590;318591;318592;318593;318594	428926;428927;428928;428929;428930;428931;428932;428933;428934;428935;428936;428937;428938;428939;428940;428941;428942;428943	428926			18	
TVVNKDVFRDPALK	2	Acetyl (K)	1642.9043	0.90425571	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By matching	14.8	0.433							1	3			2	1	1	71.701	61.042	3	0.0018702	32654	160513_QHF_FH_JSI11Kac_5	71.879	52.201			0.34086	0.33894	51.783	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.89612	1.0579	2.9102	2	0	Median	0.38067	0.37502	NaN	1	0	Median	0.48393	0.53303	NaN	1	0	Median	109040000	71585000	37456000	0	0	0	21288000	11334000	9954400	71727000	49486000	22242000	16026000	10765000	5260100	52726	1953	49658	318595;318596;318597;318598	428944;428945	428944	1971		2	
TVVPCCSGPK	1	Unmodified	1103.5104	0.51035025	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	20.078	19.586	2	0.0067949	17027	160511_QHF_FH_JSI12i_1	52.278	35.502			1.0638	1.123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0638	1.123	NaN	1	0	Median	37737000	16297000	21440000	0	0	0	0	0	0	0	0	0	37737000	16297000	21440000	52727	1194	49659	318599	428946;428947	428946			2	
TVVSGLVNHVPLEQMQNR	0	Unmodified	2020.0524	0.052393282	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3.62	3.61		5	7						1	5	5	3		65.778	64.111	2;3	2.0625E-32	56441	160511_QHF_FH_JSI9i_2	150.21	136.25			1.1544	1.201	24.385	10	4	Median	1.6091	1.2721	21.979	3	2	Median	0.97777	1.1956	28.547	5	1	Median	1.1308	1.1154	21.646	2	1	Median	NaN	NaN	NaN	0	0	Median	2269800000	1121300000	1148500000	579030000	211620000	367410000	1261800000	700210000	561540000	429040000	209450000	219590000	0	0	0	52728	2323	49660	318600;318601;318602;318603;318604;318605;318606;318607;318608;318609;318610;318611;318612	428948;428949;428950;428951;428952;428953;428954;428955;428956;428957;428958;428959;428960;428961;428962;428963;428964;428965;428966	428961			18	
TVVSGLVNHVPLEQMQNR	0	Oxidation (M)	2036.0473	0.047307904	2323	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		56.368	55.336	3	6.4258E-06	46302	160511_QHF_FH_JSI10i_3	89.049	75.008			1.0086	1.1174	14.315	3	1	Median	1.5478	1.2853	NaN	1	0	Median	0.95999	1.1174	NaN	1	0	Median	1.0086	0.96535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	345590000	161880000	183710000	100090000	40220000	59865000	183890000	92959000	90930000	61614000	28702000	32912000	0	0	0	52729	2323	49660	318613;318614;318615	428967;428968;428969;428970;428971	428969		1914	5	
TVVSGLVQFVPK	1	Unmodified	1272.7442	0.74417324	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	4.75	3	3						1		2	1	2	2	78.335	76.233	2	7.9841E-16	66641	160511_QHF_FH_JSI12i_2	158.79	137.26			0.96975	0.9738	16.15	7	3	Median	1.0923	0.90303	14.865	2	1	Median	0.72803	0.85147	NaN	1	1	Median	0.82056	0.81936	25.44	2	1	Median	0.95484	1.0386	9.1087	2	0	Median	1288900000	631400000	657490000	386990000	211690000	175290000	92088000	43541000	48547000	421530000	184960000	236570000	388270000	191200000	197070000	52730	1823	49661	318616;318617;318618;318619;318620;318621;318622	428972;428973;428974;428975;428976;428977;428978;428979;428980;428981	428972			10	
TVVSGSCAAHSLLITTEGK	1	Unmodified	1929.983	0.98297631	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.07	6.52		3	4					3	4	2	3	5	4	59.563	54.413	2;3	6.3251E-55	47960	160511_QHF_FH_JSI11i_3	222.79	196.43			0.88329	0.87713	44.409	14	1	Median	0.90953	0.7765	10.488	2	1	Median	0.87034	1.0643	22.28	3	0	Plateau	0.84648	0.83513	25.616	5	0	Median	1.5155	1.6087	34.843	4	0	Median	1757800000	873400000	884380000	106870000	59450000	47422000	239870000	138830000	101040000	874760000	441260000	433490000	536280000	233860000	302420000	52731	5200	49662	318623;318624;318625;318626;318627;318628;318629;318630;318631;318632;318633;318634;318635;318636	428982;428983;428984;428985;428986;428987;428988;428989;428990;428991;428992;428993;428994;428995;428996;428997;428998;428999;429000;429001	428982			20	
TVVSVLK	1	Unmodified	744.47454	0.47454032	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.85	6.48	3	4	1				1	3	1	3	2	4	4	38.061	33.845	2	0.0076955	30198	160511_QHF_FH_JSI11i_1	86.472	33.836			1.0248	0.99077	23.048	13	0	Median	1.0248	0.85584	12.847	3	0	Median	0.78547	0.94334	12.356	2	0	Median	0.8939	0.91659	13.877	4	0	Linear	0.9314	1.0382	37.089	4	0	Median	2533400000	1421900000	1111500000	402610000	190170000	212440000	555320000	337090000	218230000	845450000	522620000	322830000	730010000	371970000	358040000	52732	2294	49663	318637;318638;318639;318640;318641;318642;318643;318644;318645;318646;318647;318648;318649	429002;429003;429004;429005;429006;429007;429008;429009;429010;429011;429012;429013;429014;429015;429016	429002			15	
TVVTGIEMFHK	1	Oxidation (M)	1276.6486	0.64855829	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3.89	4.31		5	3						1		2	4	3	43.572	41.827	3	9.2108E-05	35925	160511_QHF_FH_JSI12i_3	74.962	60.998			1.0751	1.0813	27.035	8	3	Median	NaN	NaN	NaN	0	0	Median	0.81348	0.98861	9.7168	2	1	Median	1.1057	1.092	6.4314	3	1	Median	1.0039	1.0505	46.895	3	1	Plateau	484350000	236250000	248100000	0	0	0	125280000	64803000	60479000	157620000	70255000	87361000	201460000	101190000	100260000	52733	1658	49664	318650;318651;318652;318653;318654;318655;318656;318657;318658	429017;429018;429019;429020;429021;429022	429021		1343	6	
TVVTGIEMFHK	1	Unmodified	1260.6536	0.65364367	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.24	6.09		9	6					1	5	5	5	4	7	58.807	55.495	2;3	7.882E-19	47937	160511_QHF_FH_JSI12i_2	139.86	130.9			1.2114	1.1844	34.792	21	9	Median	1.1887	1.0206	16.937	5	1	Median	0.90932	1.0769	24.725	5	3	Median	1.49	1.456	42.54	4	1	Median	1.4548	1.5983	40.986	7	4	Median	11870000000	5136200000	6733700000	1540500000	736740000	803740000	2000300000	995370000	1004900000	3999500000	1614800000	2384700000	4329600000	1789300000	2540300000	52734	1658	49664	318659;318660;318661;318662;318663;318664;318665;318666;318667;318668;318669;318670;318671;318672;318673;318674;318675;318676;318677;318678;318679	429023;429024;429025;429026;429027;429028;429029;429030;429031;429032;429033;429034;429035;429036;429037;429038;429039;429040;429041;429042;429043;429044;429045;429046;429047;429048;429049;429050;429051;429052;429053;429054;429055;429056;429057;429058	429029			36	
TVVTGIEMFHKSLER	1	Acetyl (K)	1787.924	0.92400487	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.763	68.446	3	0.0030937	37401	160513_QHF_FH_JSI11Kac_6	62.525	50.607			0.024619	0.023129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.024619	0.023129	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145270000	142660000	2612300	0	0	0	0	0	0	145270000	142660000	2612300	0	0	0	52735	1658	49665	318680	429059	429059	1682		1	
TVVTPLDMNR	0	Unmodified	1144.591	0.59104341	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	50.819	49.857	2	0.011066	42691	160511_QHF_FH_JSI12i_2	56.729	26.475			1.0935	1.1381	1.2166	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1539	1.148	NaN	1	1	Median	1.0362	1.1284	NaN	1	1	Median	72856000	35951000	36905000	0	0	0	0	0	0	33513000	19922000	13592000	39343000	16029000	23314000	52736	3843	49666	318681;318682	429060;429061	429060			2	
TVVVEAGKK	2	Unmodified	929.55458	0.55458155	613	O94842	TOX4	TOX high mobility group box family member 4	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			3									1	2	10.465	10.528	2;3	0.003809	7818	160511_QHF_FH_JSI12i_3	58.981	28.796			1.1244	1.1358	56.713	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56187	0.51151	NaN	1	0	Median	1.3104	1.3193	21.172	2	1	Median	225030000	123540000	101490000	0	0	0	0	0	0	32427000	22574000	9852900	192610000	100970000	91640000	52737	613	49667	318683;318684;318685	429062;429063	429062			2	
TVVVLGGGISGLAASYHLSR	0	Unmodified	1956.0793	0.079259959	1701	P50336	PPOX	Protoporphyrinogen oxidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			81.595	76.002	3	1.0706E-05	41855	160513_QHF_FH_JSI10Kac_6	125.23	98.791			0.44504	0.52597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44504	0.52597	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71483000	45677000	25807000	0	0	0	71483000	45677000	25807000	0	0	0	0	0	0	52738	1701	49668	318686	429064	429064			1	
TVWDWELMNDIK	1	Unmodified	1548.7283	0.72826518	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	3.05	4	13	3						1	3	3	8	7	97.345	96.597	2;3	1.1157E-64	84111	160511_QHF_FH_JSI12i_2	248.73	205.22			0.94992	0.99166	14.823	16	4	Median	1.1251	0.97044	14.582	2	0	Median	0.82901	1.0114	30.107	3	0	Median	0.98184	0.96315	12.792	6	3	Median	0.88478	0.99821	10.358	5	1	Median	3936800000	1875100000	2061700000	520650000	260150000	260490000	894060000	426200000	467860000	1512100000	709650000	802490000	1010000000	479110000	530860000	52739	1057	49669	318687;318688;318689;318690;318691;318692;318693;318694;318695;318696;318697;318698;318699;318700;318701;318702;318703;318704;318705;318706;318707	429065;429066;429067;429068;429069;429070;429071;429072;429073;429074;429075;429076;429077;429078;429079;429080;429081;429082;429083;429084;429085;429086;429087;429088;429089;429090;429091;429092;429093;429094;429095;429096;429097;429098;429099	429072			35	
TVWDWELMNDIK	1	Oxidation (M)	1564.7232	0.7231798	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	81.519	80.622	2	0.0001674	71566	160511_QHF_FH_JSI10i_2	87.789	77.417			1.4388	1.5023	32.859	4	1	Median	NaN	NaN	NaN	0	0	Median	0.95379	1.1632	NaN	1	0	Median	1.3213	1.307	NaN	1	0	Median	1.8662	2.0497	24.256	2	1	Median	229710000	82774000	146940000	0	0	0	39394000	18573000	20821000	47738000	25308000	22430000	142580000	38894000	103690000	52740	1057	49669	318708;318709;318710;318711	429100;429101;429102;429103;429104	429104		693	5	
TVWEISQK	1	Unmodified	989.5182	0.51819605	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.73	1	5	5					3	1	4	3	3	5	41.663	39.278	2	0.00044914	34527	160511_QHF_FH_JSI10i_2	107.9	72.015			1.0682	1.0617	41.609	12	6	Median	1.3885	1.1969	63.895	3	3	Median	1.4103	1.6436	27.549	2	1	Median	1.0682	1.0516	5.5977	2	0	Median	0.87786	0.95083	39.868	5	2	Median	1909000000	924980000	984000000	345180000	164680000	180510000	361340000	200420000	160920000	550840000	248970000	301870000	651620000	310920000	340700000	52741	1242	49670	318712;318713;318714;318715;318716;318717;318718;318719;318720;318721;318722;318723;318724;318725;318726	429105;429106;429107;429108;429109;429110;429111;429112;429113;429114;429115;429116;429117;429118;429119;429120;429121;429122;429123;429124	429120			20	
TVWLPGK	1	Unmodified	799.45922	0.4592246	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.034	46.913	2	0.0572	40075	160511_QHF_FH_JSI12i_3	41.502	7.7638			1.0594	1.0309	5.893	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1401	1.0748	NaN	1	0	Median	0.98447	0.98887	NaN	1	0	Median	145210000	77726000	67481000	0	0	0	0	0	0	57762000	27380000	30382000	87444000	50346000	37099000	52742	235	49671	318727;318728	429125	429125			1	
TVWQYHFR	0	Unmodified	1135.5563	0.55631289	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	52.937	43.732	3	0.0031684	23990	160513_QHF_FH_JSI10Kac_6	60.478	52.552			0.89262	1.0093	8.6382	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91069	1.0728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8749	0.94947	NaN	1	0	Median	56494000	29912000	26582000	0	0	0	48038000	25310000	22727000	0	0	0	8456200	4601900	3854400	52743	2239	49672	318729;318730	429126;429127	429127			2	
TVYALPTIAFAFVCHPSVLPIYSELK	1	Unmodified	2935.5558	0.55577411	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.132	89.709	3	2.4816E-111	50872	160513_QHF_FH_JSI11Kac_6	237.97	212.03			1.077	1.2099	29.667	4	1	Median	1.7631	1.5231	NaN	1	1	Median	1.0051	1.2083	NaN	1	0	Median	0.79807	0.75206	NaN	1	0	Median	1.1541	1.2116	NaN	1	0	Median	777700000	378670000	399030000	74504000	22875000	51629000	264920000	141280000	123640000	215150000	117090000	98066000	223130000	97426000	125700000	52744	4675	49673	318731;318732;318733;318734	429128;429129;429130;429131;429132;429133	429128			6	
TVYCNVHK	1	Unmodified	1019.4859	0.48585006	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2		1	3	3	11.059	8.6558	2;3	1.5155E-05	7044	160511_QHF_FH_JSI12i_3	119.41	75.599			1.18	1.3219	33.274	7	0	Median	NaN	NaN	NaN	0	0	Median	1.5282	1.754	NaN	1	0	Median	1.1453	1.0789	19.637	3	0	Plateau	1.8024	1.772	16.957	3	0	Plateau	2203400000	1069700000	1133600000	0	0	0	33616000	11676000	21941000	864400000	443560000	420840000	1305400000	614500000	690870000	52745	2380	49674	318735;318736;318737;318738;318739;318740;318741	429134;429135;429136;429137;429138;429139;429140;429141;429142;429143;429144	429142			11	
TVYFAEEVQCEGNSFHK	1	Unmodified	2043.8996	0.89964061	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		2	3						2	2	2	1	2	60.902	59.045	2;3	1.6765E-23	50822	160511_QHF_FH_JSI12i_3	182.18	176.17			1.0861	1.1129	42.562	5	1	Median	1.2841	1.1147	NaN	1	0	Median	0.77285	0.95992	NaN	1	0	Median	1.0838	1.0297	NaN	1	0	Median	1.6854	1.7328	62.62	2	1	Median	988650000	456160000	532490000	83173000	35008000	48165000	167830000	89787000	78042000	321910000	153860000	168050000	415740000	177500000	238240000	52746	1191	49675	318742;318743;318744;318745;318746;318747;318748	429145;429146;429147;429148;429149;429150;429151;429152;429153;429154	429151			9	
TVYFAEK	1	Unmodified	856.43307	0.43306943	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	3	1	2	30.796	29.879	2	0.0080246	26178	160511_QHF_FH_JSI10i_2	87.323	71.169			1.0498	1.012	45.268	8	5	Median	1.0498	0.86922	3.9095	2	1	Median	1.0221	1.1969	62.249	3	3	Median	1.1058	1.1461	NaN	1	0	Median	0.82473	0.88613	77.444	2	1	Median	1561800000	713000000	848750000	280320000	120500000	159820000	457820000	229310000	228510000	412360000	155640000	256720000	411250000	207550000	203700000	52747	1789	49676	318749;318750;318751;318752;318753;318754;318755;318756	429155;429156;429157;429158;429159;429160;429161;429162	429162			8	
TVYFAEKVSSLGK	2	Acetyl (K)	1469.7766	0.77659558	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.134	70.583	2	1.359E-07	37405	160513_QHF_FH_JSI11Kac_5	106.49	87.221			0.34978	0.34571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34978	0.34571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2964500	2328800	635680	0	0	0	0	0	0	2964500	2328800	635680	0	0	0	52748	1789	49677	318757	429163	429163	1802;1803		1	
TVYGGGCSEMLMAHAVTQLANR	0	Oxidation (M)	2381.0926	0.092619891	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		65.415	64.42	3	0.00010942	59617	160511_QHF_FH_JSI9i_3	55.588	50.721			2.9434	2.9417	63.318	2	2	Median	5.4364	4.6029	NaN	1	1	Median	1.5936	1.88	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49541000	20665000	28876000	10346000	1789200	8556700	26275000	5956000	20319000	12920000	12920000	0	0	0	0	52749	2090	49678	318758;318759;318760	429164;429165;429166	429166		1755;1756	3	
TVYGGGCSEMLMAHAVTQLANR	0	Unmodified	2365.0977	0.097705269	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	2	1	79.584	72.831	3	8.3455E-29	39862	160513_QHF_FH_JSI10Kac_6	150.83	147.03			1.0651	1.2252	16.913	5	1	Median	1.4423	1.245	NaN	1	0	Median	1.0651	1.2252	NaN	1	0	Median	0.98761	0.97346	13.744	2	1	Median	1.26	1.3664	NaN	1	0	Median	292270000	135710000	156560000	45389000	18494000	26895000	110430000	56726000	53708000	114080000	49481000	64598000	22369000	11010000	11359000	52750	2090	49678	318761;318762;318763;318764;318765	429167;429168;429169;429170;429171	429171			5	
TVYGNHER	0	Unmodified	974.45699	0.45699277	4938	Q9NR19	ACSS2	Acetyl-coenzyme A synthetase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			11.46	4.6239	3	0.048681	4319	160513_QHF_FH_JSI10Kac_6	22.086	13.223			0.024598	0.029841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.024598	0.029841	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21142000	20227000	915550	0	0	0	21142000	20227000	915550	0	0	0	0	0	0	52751	4938	49679	318766;318767	429172;429173	429173			2	
TVYNPAALK	1	Unmodified	975.53893	0.53893149	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		37.478	36.861	2	0.00079124	32953	160511_QHF_FH_JSI10i_1	85.212	58.61			0.43744	0.45864	50.691	3	3	Plateau	0.2916	0.23878	NaN	1	1	Median	0.54602	0.64375	NaN	1	1	Median	0.35045	0.32676	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	118340000	71612000	46732000	22001000	14652000	7348800	46296000	28500000	17796000	50047000	28460000	21587000	0	0	0	52752	2956	49680	318768;318769;318770	429174;429175;429176	429175			3	
TVYPMER	0	Unmodified	894.42694	0.4269382	5293	Q9UHB6;Q9BT23	LIMA1;LIMD2	LIM domain and actin-binding protein 1;LIM domain-containing protein 2	yes	no	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	23.962	23.139	2	0.034446	19177	160511_QHF_FH_JSI11i_2	50.127	40.377			1.3154	1.4423	24.082	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89948	1.1064	NaN	1	0	Median	1.6622	1.737	NaN	1	0	Median	1.041	1.1977	NaN	1	0	Median	178170000	82675000	95499000	0	0	0	34093000	22049000	12044000	77886000	27643000	50243000	66195000	32983000	33212000	52753	5293	49681	318771;318772;318773	429177	429177			1	
TVYSILR	0	Unmodified	850.49125	0.49125301	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	4	3	3	46.346	42.63	2	0.0011194	22191	160513_QHF_FH_JSI12Kac_6	110.63	65.66			0.92412	0.941	15.311	12	0	Median	1.1511	0.98928	17.893	3	0	Median	0.80049	0.98698	21.989	3	0	Median	0.9548	0.91011	3.788	3	0	Median	0.84982	0.84734	8.6575	3	0	Median	3645100000	1859200000	1785900000	670940000	296650000	374290000	936490000	494680000	441810000	976990000	475530000	501460000	1060700000	592320000	468350000	52754	832	49682	318774;318775;318776;318777;318778;318779;318780;318781;318782;318783;318784;318785;318786	429178;429179;429180;429181;429182;429183;429184;429185;429186;429187;429188;429189;429190;429191;429192;429193;429194;429195;429196;429197	429194			20	
TVYSVFGFSFK	1	Unmodified	1280.6441	0.64412484	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.68	6.04		4	5	2	2				6	4	4	5	6	91.68	86.95	2	7.4383E-46	45460	160513_QHF_FH_JSI10Kac_6	204.52	174.34			0.92425	0.96045	16.854	19	6	Median	1.024	0.93287	28.748	4	1	Median	0.92032	1.0002	13.526	4	0	Median	1.0632	1.0516	10.046	5	2	Median	0.88869	0.91443	14.77	6	3	Median	44878000000	21544000000	23334000000	7706300000	3223500000	4482800000	10210000000	5122900000	5087000000	15976000000	7316600000	8659400000	10986000000	5881300000	5104600000	52755	1282	49683	318787;318788;318789;318790;318791;318792;318793;318794;318795;318796;318797;318798;318799;318800;318801;318802;318803;318804;318805	429198;429199;429200;429201;429202;429203;429204;429205;429206;429207;429208;429209;429210;429211;429212;429213;429214;429215;429216;429217;429218;429219;429220;429221;429222;429223;429224;429225;429226;429227;429228;429229;429230;429231;429232;429233;429234;429235;429236;429237;429238;429239;429240;429241	429240			44	
TVYSVLHTTPAILLK	1	Unmodified	1654.9658	0.96579333	3620	Q8NCL4	GALNT6	Polypeptide N-acetylgalactosaminyltransferase 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	78.063	77.176	2;3	4.9866E-07	68720	160511_QHF_FH_JSI11i_3	124.42	116.44			0.93344	0.94021	7.2242	5	5	Median	1.2048	1.016	1.3886	2	2	Median	0.72753	0.88059	NaN	1	1	Median	0.93344	0.87933	NaN	1	1	Median	0.91445	0.94021	NaN	1	1	Median	323500000	171490000	152010000	83107000	39603000	43504000	79109000	48402000	30708000	144420000	74095000	70327000	16860000	9389400	7470400	52756	3620	49684	318806;318807;318808;318809;318810	429242;429243;429244;429245;429246;429247	429242			6	
TVYVELLPK	1	Unmodified	1060.6168	0.61684746	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		76.444	65.78	2	0.00080498	35027	160513_QHF_FH_JSI11Kac_5	90.657	73.292			0.90558	0.83777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90558	0.83777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1164000	633590	530370	0	0	0	0	0	0	1164000	633590	530370	0	0	0	52757	2831	49685	318811	429248	429248			1	
TVYVSVLPTTADF	0	Unmodified	1411.7235	0.72349737	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	4									1	1	2		100.53	100.43	2	1.7304E-05	91119	160511_QHF_FH_JSI11i_1	84.615	67.179			1.1622	1.1012	9.952	3	1	Median	1.2397	0.99838	NaN	1	0	Median	1.049	1.2183	NaN	1	0	Median	1.1622	1.1012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	161820000	72307000	89514000	40632000	15268000	25364000	70012000	34536000	35476000	51177000	22503000	28675000	0	0	0	52758	1520	49686	318812;318813;318814;318815	429249;429250;429251;429252	429250			4	
TWDDDYVLK	1	Unmodified	1153.5292	0.52915466	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	54.275	53.612	3	0.030969	48541	160511_QHF_FH_JSI11i_1	24.776	13.182			1.0036	0.99625	13.006	4	0	Median	1.0958	0.89379	NaN	1	0	Median	0.94791	1.1211	NaN	1	0	Median	0.94068	0.88792	NaN	1	0	Median	1.0625	1.1105	NaN	1	0	Median	271460000	145970000	125490000	54953000	23237000	31715000	73758000	52499000	21259000	66329000	34890000	31439000	76419000	35345000	41073000	52759	5409	49687	318816;318817;318818;318819	429253;429254	429253			2	
TWELANNMQEAQSIDEIYK	1	Unmodified	2282.0525	0.052512441	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2									1	1	4	87.115	86.591	2;3	2.0035E-23	78909	160511_QHF_FH_JSI12i_1	132.86	118.89			0.91375	0.97945	71.897	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0396	1.2076	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80311	0.79439	87.698	3	3	Median	68632000	38668000	29964000	0	0	0	27611000	16331000	11280000	0	0	0	41021000	22337000	18684000	52760	3905	49688	318820;318821;318822;318823;318824;318825	429255;429256;429257;429258;429259;429260	429258			6	
TWELANNMQEAQSIDEIYKYDK	2	Unmodified	2688.2377	0.23774703	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	86.889	86.317	3	1.7727E-15	74826	160511_QHF_FH_JSI12i_3	132.45	129.05			0.45195	0.50858	62.471	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40549	0.38574	NaN	1	1	Median	0.75893	0.80442	64.841	2	1	Median	74417000	43720000	30697000	0	0	0	0	0	0	16936000	11505000	5430800	57480000	32215000	25266000	52761	3905	49689	318826;318827;318828;318829	429261;429262;429263;429264;429265	429264			5	
TWELSLYELHR	0	Unmodified	1445.7303	0.73031409	2246	Q06587	RING1	E3 ubiquitin-protein ligase RING1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	1	2	4	2	76.572	72.183	3	1.0469E-11	37442	160513_QHF_FH_JSI9Kac_6	134.13	120.99			1.2346	1.1641	24.161	8	2	Median	1.3513	1.148	NaN	1	0	Median	0.73334	0.85951	10.154	2	1	Median	1.2913	1.2142	24.196	3	1	Median	1.2377	1.2788	11.332	2	0	Median	376710000	188820000	187890000	60978000	29236000	31742000	133940000	78343000	55599000	99039000	42770000	56269000	82757000	38472000	44285000	52762	2246	49690	318830;318831;318832;318833;318834;318835;318836;318837;318838	429266;429267;429268;429269;429270;429271;429272;429273;429274;429275;429276;429277;429278	429273			13	
TWEQQQEVVSR	0	Unmodified	1388.6684	0.66844211	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	29.519	28.745	2	6.1453E-06	25099	160511_QHF_FH_JSI10i_2	110.38	93.711			0.99625	1.0148	20.984	5	2	Median	1.2154	1.0369	NaN	1	0	Median	1.1205	1.4127	NaN	1	0	Median	0.87866	0.87058	14.022	2	2	Median	0.93656	1.0148	NaN	1	0	Median	280350000	136840000	143520000	35619000	17665000	17954000	40828000	17011000	23817000	171220000	84984000	86233000	32691000	17179000	15512000	52763	5346	49691	318839;318840;318841;318842;318843	429279;429280;429281;429282;429283;429284;429285;429286	429286			8	
TWEVENPKK	2	Unmodified	1129.5768	0.57677356	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	23.305	23.287	2	0.035032	19186	160511_QHF_FH_JSI12i_3	51.113	32.019			0.8531	0.83426	39.12	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8531	0.83426	39.12	2	2	Median	81962000	58481000	23481000	0	0	0	0	0	0	0	0	0	81962000	58481000	23481000	52764	5063	49692	318844;318845	429287;429288	429288			2	
TWFDKPNFNR	1	Acetyl (K)	1365.6466	0.64658446	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	75.373	66.943	2	8.5898E-05	36111	160513_QHF_FH_JSI11Kac_6	101.11	82.325			0.93255	1.0528	2.2931	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90729	1.07	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95851	1.0358	NaN	1	0	Median	71809000	25894000	45915000	0	0	0	35102000	18463000	16639000	21515000	0	21515000	15192000	7430300	7761400	52765	2956	49693	318846;318847;318848;318849	429289;429290;429291;429292;429293;429294	429289	2724		6	
TWFQEYMNSK	1	Unmodified	1332.5809	0.58087266	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	61.612	60.743	2	5.1626E-11	52259	160511_QHF_FH_JSI12i_3	147.4	108.44			0.95944	0.92199	26.583	8	3	Median	0.96042	0.79554	21.046	2	1	Median	0.85321	1.0022	30.349	2	1	Median	1.007	0.98195	9.0966	2	0	Median	0.67702	0.71572	43.438	2	1	Median	1112300000	580250000	532050000	116800000	60175000	56624000	219650000	128260000	91390000	316190000	156410000	159790000	459670000	235420000	224250000	52766	3503	49694	318850;318851;318852;318853;318854;318855;318856;318857	429295;429296;429297;429298;429299;429300;429301;429302;429303;429304;429305;429306;429307;429308;429309	429307			15	
TWFQEYMNSK	1	Oxidation (M)	1348.5758	0.57578728	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	46.832	46.59	2	0.030375	39808	160511_QHF_FH_JSI12i_3	41.876	32.918			1.1746	1.1668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1746	1.1668	NaN	1	0	Median	30088000	12612000	17475000	0	0	0	0	0	0	0	0	0	30088000	12612000	17475000	52767	3503	49694	318858	429310	429310			1	
TWFSIPEK	1	Unmodified	1006.5124	0.51238239	763	P00374;Q86XF0	DHFR;DHFRL1	Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	66.832	66.181	2	0.0010799	58774	160511_QHF_FH_JSI11i_3	94.302	47.877			0.92922	0.93476	12.796	6	0	Median	1.0599	0.9313	NaN	1	0	Median	0.75266	0.93823	NaN	1	0	Median	0.86589	0.83781	7.8315	2	0	Median	1.003	1.0784	10.769	2	0	Median	1403500000	754160000	649290000	130740000	71391000	59352000	173900000	112400000	61494000	546070000	292650000	253420000	552740000	277710000	275030000	52768	763	49695	318859;318860;318861;318862;318863;318864;318865	429311;429312;429313;429314;429315;429316;429317;429318;429319;429320;429321;429322	429312			12	
TWGADVINMTTVPEVVLAK	1	Unmodified	2043.0711	0.071063038	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	101.48	101.38	2	4.8152E-266	87204	160511_QHF_FH_JSI12i_2	355.74	332.51			0.8798	0.93295	10.232	7	0	Median	1.0625	0.92207	NaN	1	0	Median	0.7737	0.9251	3.9263	2	0	Median	1.1205	1.0993	12.274	2	0	Median	0.84534	0.91409	2.887	2	0	Median	1610700000	825240000	785480000	282660000	129840000	152820000	426920000	228440000	198480000	509380000	250210000	259170000	391760000	216750000	175010000	52769	2354	49696	318866;318867;318868;318869;318870;318871;318872	429323;429324;429325;429326;429327;429328;429329;429330;429331;429332	429325			10	
TWGLHLFSWNPSYAR	0	Unmodified	1833.8951	0.895088	2272	Q08431	MFGE8	Lactadherin;Lactadherin short form;Medin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			84.426	78.8	3	0.00011301	43967	160513_QHF_FH_JSI10Kac_6	83.37	78.565			1.0256	1.2334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0256	1.2334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	146510000	75720000	70786000	0	0	0	146510000	75720000	70786000	0	0	0	0	0	0	52770	2272	49697	318873	429333	429333			1	
TWGLQATNAVSPLK	1	Unmodified	1484.7987	0.798728	5550	Q9Y2Z9	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	68.721	68.522	2	3.4292E-06	59346	160511_QHF_FH_JSI12i_3	133.15	117.88			1.5733	1.612	25.461	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.742	1.6634	NaN	1	1	Median	1.2769	1.3038	30.014	2	2	Median	107840000	44466000	63374000	0	0	0	0	0	0	29760000	9425000	20335000	78079000	35041000	43039000	52771	5550	49698	318874;318875;318876	429334;429335;429336	429336			3	
TWGQDAGSGKGGQGPPTR	1	Acetyl (K)	1797.8394	0.83942362	4918	Q9NQC1	JADE2	Protein Jade-2	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	38.352	28.71	2	2.5466E-05	17173	160513_QHF_FH_JSI12Kac_4	98.531	74.68			0.8092	0.86815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8092	0.86815	NaN	1	0	Median	2583800	1206500	1377300	0	0	0	0	0	0	0	0	0	2583800	1206500	1377300	52772	4918	49699	318877	429337	429337	3268		1	
TWHAWMDNIR	0	Unmodified	1328.6084	0.60842481	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			62.311	53.947	3	0.034785	29751	160513_QHF_FH_JSI10Kac_6	39.785	38.477			1.0222	1.2125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0222	1.2125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18130000	8423300	9707000	0	0	0	18130000	8423300	9707000	0	0	0	0	0	0	52773	1283	49700	318878	429338	429338			0	
TWIEGLTGLSIGPDFQK	1	Unmodified	1860.9622	0.96216452	4268	Q99439	CNN2	Calponin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		101.16	101.07	2	1.3615E-80	89573	160511_QHF_FH_JSI10i_2	239.87	217.67			0.94631	0.95004	9.6644	3	0	Plateau	1.0213	0.89679	NaN	1	0	Median	0.63964	0.78674	NaN	1	0	Median	0.94631	0.95004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	443270000	245470000	197800000	131710000	70132000	61580000	114110000	69487000	44618000	197450000	105850000	91603000	0	0	0	52774	4268	49701	318879;318880;318881	429339;429340;429341	429341			3	
TWIEVSGSSAK	1	Unmodified	1163.5823	0.58225287	1960	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.37		4	1					4		2	2	2	3	48.531	43.365	2	6.854E-05	38246	160511_QHF_FH_JSI10i_2	92.428	72.641			0.94813	0.95269	13.078	9	0	Median	1.0949	0.93172	3.1487	2	0	Median	0.8433	0.9972	3.5174	2	0	Median	0.95563	0.95113	1.6923	2	0	Median	0.73945	0.83343	22.761	3	0	Median	644090000	341620000	302470000	94930000	43262000	51669000	150840000	81288000	69551000	242290000	130640000	111650000	156030000	86426000	69600000	52775	1960	49702	318882;318883;318884;318885;318886;318887;318888;318889;318890	429342;429343;429344;429345;429346;429347;429348;429349;429350;429351	429350			10	
TWIPEVHDQKADVSAWK	2	Acetyl (K)	2051.0112	0.011239973	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.566	68.248	3	0.00033927	37319	160513_QHF_FH_JSI11Kac_6	85.937	69.994			2.1666	2.0539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1666	2.0539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17602000	9956100	7645700	0	0	0	0	0	0	17602000	9956100	7645700	0	0	0	52776	4603	49703	318891	429352	429352	3193		1	
TWITNSPMADLFVVWAR	0	Unmodified	2006.0084	0.0084032019	3912	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.396	89.969	2	2.6535E-128	53984	160513_QHF_FH_JSI10Kac_6	263.59	200.18			0.91072	0.96761	11.934	4	3	Median	0.94643	0.81242	NaN	1	1	Median	0.87636	1.0352	NaN	1	0	Median	1.1018	1.0425	NaN	1	1	Median	0.83575	0.90445	NaN	1	1	Median	489070000	266030000	223040000	73147000	43154000	29993000	224260000	119610000	104650000	133130000	71116000	62014000	58532000	32149000	26383000	52777	3912	49704	318892;318893;318894;318895	429353;429354;429355;429356;429357	429357			5	
TWKALQDFK	2	Acetyl (K)	1177.6132	0.61315906	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		6.0104	-1.5923	3	0.029266	2118	160513_QHF_FH_JSI11Kac_4	30.564	9.1917			0.99267	0.98036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99267	0.98036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25090000	12540000	12550000	0	0	0	0	0	0	25090000	12540000	12550000	0	0	0	52778	5743	49705	318896	429358	429358			1	
TWKPTLVILR	1	Unmodified	1225.7547	0.75467834	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.264	65.58	3	0.00067928	34416	160513_QHF_FH_JSI12Kac_6	78.342	61.671			0.85821	1.0361	13.891	4	0	Linear	1.0687	0.92928	NaN	1	0	Median	0.7902	0.9447	NaN	1	0	Median	0.93206	0.8937	NaN	1	0	Median	0.65238	0.70134	NaN	1	0	Median	1178900000	599460000	579430000	288790000	141130000	147660000	687660000	352810000	334850000	110800000	53784000	57011000	91636000	51732000	39905000	52779	255	49706	318897;318898;318899;318900	429359;429360;429361;429362;429363;429364;429365	429363			7	
TWLEEQGMILK	1	Unmodified	1346.6904	0.69042311	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	73.978	72.98	2	1.0871E-05	62981	160511_QHF_FH_JSI12i_2	109.66	97.932			0.98211	0.96194	14.181	4	2	Median	0.96082	0.84487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0387	1.042	NaN	1	0	Median	0.88919	1.0097	18.155	2	2	Median	200310000	111330000	88975000	35986000	17830000	18156000	0	0	0	68316000	36056000	32260000	96006000	57448000	38559000	52780	1148	49707	318901;318902;318903;318904	429366;429367;429368;429369;429370;429371;429372	429367			7	
TWLGAPIQFAWQK	1	Unmodified	1544.814	0.81398414	3646	Q8NEZ3	WDR19	WD repeat-containing protein 19	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.723	98.723	2	0.013804	87928	160511_QHF_FH_JSI11i_3	45.161	29.895			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52781	3646	49708	318905	429373	429373			1	
TWLGPEAVSLLK	1	Unmodified	1312.7391	0.73908786	3668	Q8NHP6	MOSPD2	Motile sperm domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	91.544	91.023	2	0.0022175	79941	160511_QHF_FH_JSI11i_2	71.03	71.03			0.91599	1.0232	7.1948	4	0	Median	1.2614	1.0814	NaN	1	0	Median	0.84783	1.0234	NaN	1	0	Median	0.93253	0.91144	NaN	1	0	Median	0.89974	1.023	NaN	1	0	Median	176340000	90789000	85550000	37935000	19433000	18501000	53431000	28089000	25341000	48972000	24480000	24492000	36002000	18786000	17216000	52782	3668	49709	318906;318907;318908;318909	429374;429375;429376;429377;429378;429379;429380	429378			7	
TWLGYLFYR	0	Unmodified	1217.6233	0.62332982	3525	Q8N490	PNKD	Probable hydrolase PNKD	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	87.811	78.631	2	1.8514E-07	43857	160513_QHF_FH_JSI11Kac_6	138.55	114.39			0.97305	0.99677	33.925	4	3	Median	1.9559	1.6805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84814	0.82747	7.291	2	2	Median	1.0593	1.1404	NaN	1	0	Median	110330000	48165000	62165000	39567000	12156000	27410000	0	0	0	47115000	24139000	22976000	23649000	11870000	11779000	52783	3525	49710	318910;318911;318912;318913	429381;429382;429383;429384;429385;429386	429381			6	
TWMVGTK	1	Unmodified	821.41056	0.41055985	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	35.529	34.82	2	0.017953	29559	160511_QHF_FH_JSI12i_3	60.682	41.899			1.5954	1.6278	10.811	3	0	Median	1.8516	1.5668	NaN	1	0	Median	1.5301	1.9202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5954	1.6278	NaN	1	0	Median	376290000	151820000	224470000	90974000	40918000	50055000	106100000	47995000	58101000	0	0	0	179220000	62905000	116320000	52784	5163	49711	318914;318915;318916	429387;429388	429387			2	
TWMWWHNFR	0	Unmodified	1362.608	0.60803088	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	79.817	72.04	2;3	3.1631E-12	39767	160513_QHF_FH_JSI10Kac_6	147.29	144.5			0.8694	0.99737	5.8372	5	0	Median	1.2484	1.0642	NaN	1	0	Median	0.82455	0.97223	3.6105	2	0	Median	1.1083	1.0338	NaN	1	0	Median	0.8694	0.92505	NaN	1	0	Median	2012600000	1109000000	903590000	226090000	104400000	121700000	1622800000	919570000	703280000	62499000	32074000	30425000	101110000	52926000	48187000	52785	197	49712	318917;318918;318919;318920;318921	429389;429390;429391;429392;429393;429394;429395;429396;429397;429398;429399;429400;429401;429402;429403;429404	429400			16	
TWMWWHNFR	0	Oxidation (M)	1378.6029	0.6029455	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	76.147	68.45	2;3	0.00012733	37528	160513_QHF_FH_JSI10Kac_6	90.601	83.713			0.90741	0.97215	41.215	4	0	Median	1.1315	0.95788	NaN	1	0	Median	0.56101	0.65541	57.847	2	0	Median	NaN	NaN	NaN	0	0	Median	0.97101	1.0289	NaN	1	0	Median	290330000	155130000	135200000	41516000	16479000	25037000	217650000	122710000	94946000	0	0	0	31157000	15943000	15214000	52786	197	49712	318922;318923;318924;318925	429405;429406;429407;429408	429408		83	4	
TWNAVLLR	0	Unmodified	971.55525	0.55525025	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			60.903	59.379	2	0.00015009	49777	160511_QHF_FH_JSI10i_3	124.83	105.2			0.97853	0.94282	8.139	2	0	Median	1.2494	0.99868	NaN	1	0	Median	0.76637	0.89009	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	278860000	129860000	148990000	155810000	68113000	87696000	123050000	61752000	61296000	0	0	0	0	0	0	52787	2533	49713	318926;318927	429409;429410;429411;429412	429410			4	
TWNDPSVQQDIK	1	Unmodified	1429.6838	0.68375782	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.51	8	4	2			3	3			3	8	5	4	47.031	43.116	2;3	1.1701E-64	38265	160511_QHF_FH_JSI9i_1	227.37	183.02			0.96503	1.0264	147.92	18	7	Median	0.89896	0.72507	228.02	3	0	Median	0.86533	1.0286	43.152	7	4	Median	1.1115	1.0924	224.48	4	1	Median	1.8091	1.1296	28.293	4	2	Linear	26963000000	11559000000	15404000000	4169600000	2243000000	1926600000	9465200000	5075700000	4389500000	7402400000	2437100000	4965300000	5925700000	1803000000	4122700000	52788	982	49714	318928;318929;318930;318931;318932;318933;318934;318935;318936;318937;318938;318939;318940;318941;318942;318943;318944;318945;318946;318947	429413;429414;429415;429416;429417;429418;429419;429420;429421;429422;429423;429424;429425;429426;429427;429428;429429;429430;429431;429432;429433;429434;429435;429436;429437;429438	429429			26	
TWNLGLSNAK	1	Unmodified	1102.5771	0.57710791	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.589	53.47	2	0.00035305	45764	160511_QHF_FH_JSI12i_3	85.355	67.369			0.85862	0.84734	11.491	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82283	0.78121	NaN	1	0	Median	0.89598	0.91906	NaN	1	0	Median	490980000	271690000	219290000	0	0	0	0	0	0	204930000	110540000	94390000	286050000	161150000	124900000	52789	1005	49715	318948;318949	429439;429440;429441	429440			2	
TWNLVEGR	0	Unmodified	973.49813	0.49812931	5070	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		5								1	1	2	1	45.986	45.008	2	0.0034669	38688	160511_QHF_FH_JSI11i_2	72.23	54.194			1.0729	1.0586	15.346	4	2	Median	1.1358	0.95164	NaN	1	1	Median	1.0944	1.3641	NaN	1	0	Median	1.0518	1.074	NaN	1	1	Median	0.93717	1.0435	NaN	1	0	Median	363340000	171020000	192330000	74409000	32375000	42034000	103340000	50635000	52704000	97709000	54325000	43384000	87887000	33684000	54203000	52790	5070	49716	318950;318951;318952;318953;318954	429442;429443;429444;429445;429446;429447	429447			6	
TWNVVVHDWLYYYAYK	1	Unmodified	2119.0203	0.020348097	1439	P35610	SOAT1	Sterol O-acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	3	2	1	90.1	82.255	2;3	1.1588E-63	45689	160513_QHF_FH_JSI11Kac_6	245.82	234.35			0.84845	0.91145	25.555	8	2	Median	1.1866	1.0179	3.8131	2	0	Median	0.77466	0.92937	34.992	3	2	Median	0.78921	0.75427	24.014	2	0	Median	0.64273	0.67868	NaN	1	0	Median	1555000000	861500000	693490000	375150000	188600000	186550000	678100000	373490000	304610000	318440000	176430000	142010000	183290000	122970000	60318000	52791	1439	49717	318955;318956;318957;318958;318959;318960;318961;318962	429448;429449;429450;429451;429452;429453;429454;429455;429456;429457;429458;429459;429460	429450			13	
TWNYLEFEEEENK	1	Unmodified	1729.7471	0.74714594	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	72.847	71.787	2	5.4833E-05	63310	160511_QHF_FH_JSI9i_2	76.533	67.529			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52792	3918	49718	318963;318964	429461;429462	429462			2	
TWPLFSVFYQYLEQSK	1	Unmodified	2035.0091	0.0091147084	4418	Q9BTE7	DCUN1D5	DCN1-like protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	99.832	91.398	2;3	2.2113E-53	55099	160513_QHF_FH_JSI10Kac_6	138.39	133.58			0.99807	0.9772	22.285	8	1	Median	1.1207	0.94437	7.8183	2	0	Median	0.86547	1.0074	8.7178	2	0	Median	1.0687	1.0209	9.1664	2	0	Median	0.71644	0.76444	46.695	2	1	Median	1127200000	599120000	528130000	255220000	118200000	137020000	353220000	200500000	152720000	254080000	125820000	128260000	264730000	154590000	110130000	52793	4418	49719	318965;318966;318967;318968;318969;318970;318971;318972	429463;429464;429465;429466;429467;429468;429469;429470;429471;429472;429473;429474;429475	429473			13	
TWPSSHNWFFAK	1	Unmodified	1506.7044	0.70443369	550	O75629	CREG1	Protein CREG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			10						5	6	5	2	2	76.475	72.894	2;3	9.3083E-25	36899	160513_QHF_FH_JSI9Kac_6	128.67	112.54			0.96493	0.9334	19.129	14	0	Median	1.0773	0.85913	23.968	5	0	Median	0.86224	1.0387	21.137	5	0	Median	1.029	0.96072	11.57	2	0	Median	0.84557	0.86703	17.922	2	0	Median	1429200000	734350000	694870000	399140000	171240000	227900000	509530000	274510000	235020000	286480000	160250000	126230000	234060000	128350000	105710000	52794	550	49720	318973;318974;318975;318976;318977;318978;318979;318980;318981;318982;318983;318984;318985;318986;318987	429476;429477;429478;429479;429480;429481;429482;429483;429484;429485;429486;429487;429488;429489;429490;429491;429492;429493;429494;429495;429496;429497;429498;429499;429500;429501;429502;429503;429504;429505	429497			30	
TWQANLR	0	Unmodified	887.46135	0.46134987	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			29.221	27.868	2	0.010636	23165	160511_QHF_FH_JSI10i_3	73.975	19.45			1.3908	1.3408	53.936	2	0	Median	2.3986	1.9634	NaN	1	0	Median	0.80644	0.91565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	279430000	133220000	146210000	115620000	39153000	76469000	163810000	94065000	69740000	0	0	0	0	0	0	52795	853	49721	318988;318989	429506;429507;429508	429507			3	
TWQDSDTVK	1	Unmodified	1078.4931	0.49310351	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	19.769	19.288	2	0.013334	16779	160511_QHF_FH_JSI12i_1	46.335	37.001			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52796	3660	49722	318990	429509	429509			1	
TWTDFEHMETIEK	1	Unmodified	1665.7345	0.73447277	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.287		10	1							3	2	1	5	64.773	63.854	2;3	7.5799E-08	55577	160511_QHF_FH_JSI11i_2	113.25	103.06			0.92831	0.99161	17.508	9	3	Median	1.1939	1.0354	18.244	2	0	Median	0.72554	0.91606	22.073	2	1	Median	0.99931	1.0237	NaN	1	0	Median	0.91198	0.99117	21.973	4	2	Median	719190000	356490000	362700000	126790000	54175000	72611000	187600000	102970000	84626000	161600000	74342000	87262000	243210000	125010000	118200000	52797	3250	49723	318991;318992;318993;318994;318995;318996;318997;318998;318999;319000;319001	429510;429511;429512;429513;429514;429515;429516;429517;429518;429519;429520;429521;429522;429523;429524;429525;429526	429520			16	
TWTLELSPELASMTTR	0	Unmodified	1834.9135	0.91349976	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	99.025	98.873	2	1.6846E-10	85080	160511_QHF_FH_JSI12i_2	150.68	119.79			1.0482	1.0333	10.316	4	0	Median	1.2361	1.0543	NaN	1	0	Median	0.79328	0.95487	NaN	1	0	Median	1.0253	1.0128	NaN	1	0	Median	1.0717	1.2166	NaN	1	0	Median	108590000	51752000	56836000	21467000	7562000	13905000	25784000	13545000	12239000	26454000	12564000	13891000	34883000	18082000	16802000	52798	3862	49724	319002;319003;319004;319005	429527;429528;429529;429530;429531;429532;429533;429534	429528			8	
TWTVVDAK	1	Unmodified	918.48108	0.48108226	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.06	6.58	4	4					3	5		3	4	4	5	44.382	38.787	2	2.0046E-06	33310	160511_QHF_FH_JSI11i_2	145.63	118.11			0.96032	1.0311	20.22	16	1	Median	1.1462	0.95281	12.537	3	0	Plateau	0.85138	1.0123	10.584	4	0	Median	1.069	1.0482	13.112	4	0	Median	0.864	0.94105	34.746	5	1	Median	4748500000	2352700000	2395800000	681860000	278290000	403580000	1295400000	684170000	611220000	1640900000	812800000	828050000	1130400000	577410000	552940000	52799	1024	49725	319006;319007;319008;319009;319010;319011;319012;319013;319014;319015;319016;319017;319018;319019;319020;319021	429535;429536;429537;429538;429539;429540;429541;429542;429543;429544;429545;429546;429547;429548;429549;429550;429551;429552;429553;429554;429555;429556;429557;429558;429559;429560	429554			26	
TWVASNEIK	1	Unmodified	1046.5397	0.53965977	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.414	38.048	2	0.0037462	32345	160511_QHF_FH_JSI12i_2	58.981	41.595			0.65343	0.7003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65343	0.7003	NaN	1	0	Median	42207000	24903000	17303000	0	0	0	0	0	0	0	0	0	42207000	24903000	17303000	52800	488	49726	319022	429561	429561			1	
TWVPTSLQSLIDMAK	1	Unmodified	1688.8807	0.88074307	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.93	101.94	2	5.0677E-07	88669	160511_QHF_FH_JSI12i_3	169.23	142.52			0.86431	0.86065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86431	0.86065	NaN	1	1	Median	151660000	81778000	69880000	0	0	0	0	0	0	0	0	0	151660000	81778000	69880000	52801	5229	49727	319023	429562	429562			1	
TWWNQFSVTALQLLQANR	0	Unmodified	2175.1225	0.12252176	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									6	2	2	1	1	97.022	88.939	2;3	2.8919E-239	52872	160513_QHF_FH_JSI10Kac_6	332.06	276.16			1.0961	1.1091	12.267	6	2	Median	1.5113	1.2718	21.135	2	1	Median	0.97845	1.169	6.6493	2	0	Median	1.1717	1.103	NaN	1	0	Median	1.0135	1.0654	NaN	1	1	Median	2014800000	1008500000	1006400000	360550000	148010000	212540000	1272000000	671870000	600140000	150110000	67064000	83050000	232130000	121510000	110610000	52802	4279	49728	319024;319025;319026;319027;319028;319029	429563;429564;429565;429566;429567;429568	429567			6	
TWYGVPSLAAEHLEEVMK	1	Unmodified	2059.0085	0.0084627814	1515	P41229;Q9BY66	KDM5C;KDM5D	Lysine-specific demethylase 5C;Lysine-specific demethylase 5D	yes	no	0	0	0	0				By MS/MS	3	0			1										1	96.065	96.08	3	0.020556	83265	160511_QHF_FH_JSI12i_3	31.951	25.828			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52803	1515	49729	319030	429569	429569			1	
TYADYESVNECMEGVCK	1	Unmodified	2053.8067	0.80672779	2127	P84090	ERH	Enhancer of rudimentary homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	56.002	55.346	2	1.9559E-209	50281	160511_QHF_FH_JSI12i_1	334.19	334.19			0.82743	0.86686	16.971	4	0	Median	0.8429	0.68264	NaN	1	0	Median	0.81225	0.9787	NaN	1	0	Median	0.80591	0.78828	NaN	1	0	Median	0.92995	0.95326	NaN	1	0	Median	284930000	151200000	133730000	50235000	24792000	25444000	79266000	36019000	43247000	85216000	46573000	38643000	70212000	43817000	26395000	52804	2127	49730	319031;319032;319033;319034;319035;319036	429570;429571;429572;429573;429574;429575;429576;429577;429578;429579;429580;429581;429582	429575			13	
TYAEPLTAAMVEFYTMSQER	0	Unmodified	2337.0657	0.065719664	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2	0		3								1	1		1	102.11	102.01	3	1.1177E-11	87915	160511_QHF_FH_JSI12i_2	135.29	128.18			0.95382	1.0649	27.434	3	0	Plateau	2.1728	1.8389	NaN	1	0	Median	1.0977	1.3391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95382	1.0649	NaN	1	0	Median	471350000	231240000	240120000	67097000	21106000	45991000	125860000	64791000	61072000	0	0	0	278390000	145340000	133050000	52805	2517	49731	319037;319038;319039	429583;429584;429585	429583			3	
TYAICGAIR	0	Unmodified	1023.5172	0.51715019	2059	P63220	RPS21	40S ribosomal protein S21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.86	6.58	3	4	3				3	4	4	3	7	6	5	47.154	40.401	2	1.794E-08	33675	160511_QHF_FH_JSI10i_3	129.4	100.89			1.0734	1.1211	18.303	17	0	Median	1.462	1.2315	5.1164	3	0	Median	0.87263	1.0517	12.229	4	0	Median	0.86109	0.85528	16.741	5	0	Median	1.0973	1.1931	12.223	5	0	Median	3985200000	1843300000	2141900000	439220000	186690000	252530000	807270000	375290000	431980000	1601200000	826530000	774670000	1137500000	454830000	682680000	52806	2059	49732	319040;319041;319042;319043;319044;319045;319046;319047;319048;319049;319050;319051;319052;319053;319054;319055;319056;319057;319058;319059;319060	429586;429587;429588;429589;429590;429591;429592;429593;429594;429595;429596;429597;429598;429599;429600;429601;429602;429603;429604;429605;429606;429607;429608;429609;429610;429611;429612;429613;429614;429615;429616;429617;429618	429590			32	
TYASGYAHYEEQEN	0	Unmodified	1660.6641	0.66414459	5602	Q9Y3S2	ZNF330	Zinc finger protein 330	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.024	28.461	2	0.00045505	25497	160511_QHF_FH_JSI12i_1	72.006	60.687			1.3917	1.4874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3917	1.4874	NaN	1	0	Median	22667000	9032500	13635000	0	0	0	0	0	0	0	0	0	22667000	9032500	13635000	52807	5602	49733	319061	429619	429619			1	
TYASTEQEQDAEENGVTGVSGPGK	1	Unmodified	2453.083	0.083020526	1403	P33527	ABCC1	Multidrug resistance-associated protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.757	38.454	2	0.00043349	34688	160511_QHF_FH_JSI11i_1	51.03	39.925			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52808	1403	49734	319062	429620	429620			1	
TYAVGIQQVLLK	1	Unmodified	1331.7813	0.78128702	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.707	1	2	1								1	2	1	77.955	77.455	2	1.366E-05	67050	160511_QHF_FH_JSI12i_2	127.3	120.08			0.52175	0.50268	91.057	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0475	1.2392	NaN	1	0	Median	0.52175	0.50268	66.921	2	1	Median	0.14692	0.16534	NaN	1	1	Median	280780000	211450000	69328000	0	0	0	15935000	7828000	8107400	153100000	112210000	40890000	111740000	91410000	20331000	52809	287	49735	319063;319064;319065;319066	429621;429622;429623;429624	429622			3	
TYCYLLPTFAFAHK	1	Unmodified	1730.849	0.84904901	5694	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	89.198	87.62	3	2.8218E-05	75357	160511_QHF_FH_JSI10i_3	79.089	77.553			0.99165	0.94197	25.011	5	0	Median	1.4324	1.228	NaN	1	0	Median	0.80834	0.9295	1.8855	2	0	Median	0.99165	0.89416	NaN	1	0	Median	1.5593	1.5967	NaN	1	0	Median	194270000	90430000	103840000	9385300	4398100	4987200	68606000	38715000	29891000	52334000	24904000	27430000	63947000	22413000	41534000	52810	5694	49736	319067;319068;319069;319070;319071	429625;429626;429627;429628;429629	429626			4	
TYDATTHFETTCDDIK	1	Unmodified	1916.8098	0.80982255	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2									4	2	3	42.116	41.477	2;3	7.1247E-45	37345	160511_QHF_FH_JSI10i_1	178.32	154.34			1.0167	1.1993	21.018	8	0	Median	NaN	NaN	NaN	0	0	Median	1.0131	1.2157	1.8948	3	0	Plateau	0.89853	0.86682	6.1429	2	0	Median	1.3776	1.4616	9.5065	3	0	Plateau	1551900000	728670000	823230000	0	0	0	383330000	183180000	200160000	617510000	297340000	320170000	551060000	248150000	302900000	52811	1702	49737	319072;319073;319074;319075;319076;319077;319078;319079;319080	429630;429631;429632;429633;429634;429635;429636;429637;429638;429639	429637			8	
TYDETYQR	0	Unmodified	1074.4618	0.46180338	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	13.371	13.133	2	0.0033471	10770	160511_QHF_FH_JSI12i_1	72.789	59.812			0.98026	1.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98026	1.1187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119460000	47929000	71530000	0	0	0	119460000	47929000	71530000	0	0	0	0	0	0	52812	227	49738	319081;319082	429640;429641	429640			2	
TYDLLFK	1	Unmodified	898.48002	0.48001963	1933	P61026	RAB10	Ras-related protein Rab-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.33	4	7	1					3		2	5	5	3	67.325	63.637	2	0.0034237	55357	160511_QHF_FH_JSI11i_2	94.262	55.043			0.98182	1.1066	21.11	10	5	Median	1.3174	1.1355	NaN	1	1	Median	0.89476	1.0785	14.859	3	1	Median	1.2217	1.2501	28.905	3	2	Median	0.961	1.0504	30.019	3	1	Median	809520000	429100000	380420000	121830000	60744000	61089000	184500000	99768000	84727000	285630000	153970000	131670000	217560000	114620000	102930000	52813	1933	49739	319083;319084;319085;319086;319087;319088;319089;319090;319091;319092;319093;319094;319095;319096;319097	429642;429643;429644;429645;429646;429647;429648;429649;429650;429651;429652;429653;429654;429655	429652			14	
TYDLPGNFLTQALTQR	0	Unmodified	1836.937	0.9370124	615	O94874	UFL1	E3 UFM1-protein ligase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		100.78	100.78	3	7.8653E-05	89772	160511_QHF_FH_JSI11i_3	70.41	53.192			1.6167	1.4556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6167	1.4556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40015000	14967000	25047000	0	0	0	0	0	0	40015000	14967000	25047000	0	0	0	52814	615	49740	319098	429656	429656			1	
TYDPSGDSTLPTCSK	1	Unmodified	1627.7036	0.70356657	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.332	35.028	2	0.00063616	31490	160511_QHF_FH_JSI11i_1	87.719	72.747			0.77453	0.81368	49.51	2	2	Median	NaN	NaN	NaN	0	0	Median	0.98933	1.1548	NaN	1	1	Median	0.60637	0.57334	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41938000	22452000	19486000	0	0	0	16886000	8306200	8580100	25052000	14146000	10906000	0	0	0	52815	5544	49741	319099;319100	429657;429658	429657			2	
TYDRDNSGMIDK	1	Unmodified	1413.6194	0.61944301	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.679	3	7	3							3	2	3	5	17.597	17.07	2;3	5.5255E-05	14226	160511_QHF_FH_JSI9i_2	84.892	69.505			0.90995	0.91488	43.225	13	0	Median	1.0949	0.90408	82.804	3	0	Plateau	0.85435	1.0249	12.254	2	0	Median	1.0086	1.0445	14.277	3	0	Median	0.89645	0.91488	8.256	5	0	Median	3984800000	1987700000	1997000000	565320000	245660000	319660000	706570000	383220000	323350000	1311000000	606890000	704090000	1401900000	751930000	649950000	52816	503	49742	319101;319102;319103;319104;319105;319106;319107;319108;319109;319110;319111;319112;319113	429659;429660;429661;429662;429663;429664;429665;429666;429667;429668;429669;429670;429671	429664			13	
TYDSYLGDDYVR	0	Unmodified	1465.6361	0.63613893	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	52.252	51.583	2	1.2686E-22	46757	160511_QHF_FH_JSI11i_1	171.87	157.66		+	0.81774	0.88455	19.911	4	0	Median	1.2841	1.0505	NaN	1	0	Median	0.85176	1.0153	NaN	1	0	Median	0.78508	0.77065	NaN	1	0	Median	0.68355	0.70396	NaN	1	0	Median	688870000	366440000	322430000	137830000	60104000	77724000	188380000	97233000	91146000	190780000	103260000	87520000	171880000	105840000	66038000	52817	66	49743	319114;319115;319116;319117	429672;429673;429674;429675;429676;429677;429678;429679	429673			8	
TYDYLFK	1	Unmodified	948.45928	0.45928418	1927;3909	P61006;Q92930	RAB8A;RAB8B	Ras-related protein Rab-8A;Ras-related protein Rab-8B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1							1	1	2	2	54.979	54.158	2	0.02937	46438	160511_QHF_FH_JSI12i_2	52.636	33.159			0.77734	0.79387	11.265	6	1	Median	0.80521	0.65561	NaN	1	1	Median	0.65532	0.78069	NaN	1	0	Median	0.76733	0.76204	8.1555	2	0	Median	0.80494	0.86643	5.8759	2	0	Median	728920000	392610000	336310000	38090000	18091000	19999000	82522000	39113000	43408000	358890000	192240000	166650000	249410000	143170000	106250000	52818	1927;3909	49744	319118;319119;319120;319121;319122;319123	429680;429681;429682;429683;429684;429685	429681			6	
TYEAALETIQNMSK	1	Unmodified	1597.7658	0.76577289	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.487	5	8								3	4	2	4	70	69.209	2;3	2.2751E-65	61435	160511_QHF_FH_JSI10i_2	226.33	180.34			1.1636	1.3177	24.82	13	9	Median	1.3954	1.2282	21.638	3	2	Plateau	1.0505	1.2895	22.174	4	3	Median	1.3174	1.3158	44.392	2	1	Median	1.0739	1.2122	29.791	4	3	Median	1313500000	592340000	721190000	240100000	91055000	149050000	444880000	214900000	229980000	302830000	141980000	160860000	325710000	144410000	181310000	52819	109	49745	319124;319125;319126;319127;319128;319129;319130;319131;319132;319133;319134;319135;319136	429686;429687;429688;429689;429690;429691;429692;429693;429694;429695;429696;429697;429698;429699;429700;429701;429702;429703	429702			18	
TYEDIDK	1	Unmodified	882.39708	0.39707786	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	15.912	15.568	2	0.011599	13239	160511_QHF_FH_JSI12i_1	77.058	38.82			1.0955	1.1948	48.519	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73278	0.84784	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6377	1.6839	NaN	1	1	Median	199710000	99915000	99794000	0	0	0	99687000	56555000	43132000	0	0	0	100020000	43360000	56662000	52820	2104	49746	319137;319138	429704;429705	429704			2	
TYEEGLK	1	Unmodified	838.40725	0.40724861	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		15.744	15.267	2	0.027514	12587	160511_QHF_FH_JSI9i_1	53.554	7.1838			0.98814	0.92333	55.998	3	0	Median	2.3952	1.959	NaN	1	0	Median	0.56635	0.65558	NaN	1	0	Median	0.98814	0.92333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	298560000	139400000	159160000	128350000	29100000	99247000	100140000	73240000	26904000	70073000	37060000	33013000	0	0	0	52821	1386	49747	319139;319140;319141	429706;429707;429708	429708			3	
TYEEGLKHEANNPQLK	2	Acetyl (K)	1911.9327	0.9326553	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			47.369	37.104	3	0.01013	20986	160513_QHF_FH_JSI10Kac_4	50.608	33.729			0.20522	0.22906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20522	0.22906	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1313000	1190700	122310	0	0	0	1313000	1190700	122310	0	0	0	0	0	0	52822	1386	49748	319142	429709	429709	1337;1338		1	
TYEEIASLVAEQPK	1	Unmodified	1576.7985	0.79845323	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		68.065	67.658	2	3.3831E-05	61526	160511_QHF_FH_JSI11i_1	80.318	69.531			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52823	5685	49749	319143	429710	429710			1	
TYEEIASLVAEQPKK	2	Unmodified	1704.8934	0.89341625	5685	Q9Y5X1	SNX9	Sorting nexin-9	yes	yes	0	0	0	1			By matching	By MS/MS	2	0		2										1	1	59.285	58.366	3	0.0029136	50110	160511_QHF_FH_JSI12i_2	44.925	40.824			0.97174	1.0259	11.532	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91148	0.94557	NaN	1	0	Median	1.036	1.1131	NaN	1	0	Median	132080000	65441000	66639000	0	0	0	0	0	0	91902000	42980000	48923000	40178000	22461000	17717000	52824	5685	49750	319144;319145	429711	429711			1	
TYEGMMHSSCQQEMMDVK	1	Unmodified	2190.8513	0.85125191	548	O75608	LYPLA1	Acyl-protein thioesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	46.361	45.381	3	3.7635E-09	38882	160511_QHF_FH_JSI12i_2	135.27	131.55			0.92278	0.93459	18.354	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0131	1.2352	NaN	1	0	Median	0.92278	0.93138	NaN	1	0	Median	1.1929	1.3142	NaN	1	0	Median	273640000	155010000	118630000	7919800	7919800	0	72718000	36857000	35861000	133360000	90983000	42380000	59639000	19254000	40385000	52825	548	49751	319146;319147;319148;319149	429712;429713;429714;429715;429716;429717;429718	429713			7	
TYEHFNAMGK	1	Unmodified	1196.5284	0.52844316	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.15		10	7						1	4	5	4	5	25.965	24.595	2;3	1.2468E-07	20480	160511_QHF_FH_JSI11i_2	121.05	109.09			1.0971	1.0976	28.911	13	1	Median	1.2348	1.0562	44.116	2	0	Median	0.72659	1.3577	30.041	3	0	Plateau	1.1199	1.1236	11.659	4	1	Median	1.1675	1.1794	42.673	4	0	Median	2696600000	1327600000	1369000000	420070000	193110000	226960000	519100000	260120000	258980000	1000500000	548480000	452050000	756900000	325930000	430970000	52826	1100	49752	319150;319151;319152;319153;319154;319155;319156;319157;319158;319159;319160;319161;319162;319163;319164;319165;319166;319167	429719;429720;429721;429722;429723;429724;429725;429726;429727;429728;429729;429730;429731;429732;429733;429734;429735;429736;429737;429738;429739;429740;429741	429734			21	
TYEHFNAMGKYVDK	2	Acetyl (K)	1743.7927	0.79265635	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		59.072	49.984	3	0.00015127	27139	160513_QHF_FH_JSI11Kac_6	84.41	76.434			0.30031	0.29002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30031	0.29002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74465000	54067000	20398000	0	0	0	7412500	0	7412500	67053000	54067000	12986000	0	0	0	52827	1100	49753	319168;319169	429742;429743;429744	429743	953		3	
TYEIWHR	0	Unmodified	1003.4876	0.48756462	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	2	3	2	34.19	33.627	2;3	0.00025277	28456	160511_QHF_FH_JSI12i_3	117.93	109.4			1.1766	1.1851	18.763	9	1	Median	1.3727	1.1824	10.186	2	1	Median	0.94734	1.1195	27.022	2	0	Median	1.3056	1.2142	28.159	3	0	Median	1.0271	1.0584	15.986	2	0	Median	447020000	220050000	226970000	31755000	14924000	16831000	66761000	36400000	30360000	191160000	97070000	94088000	157340000	71653000	85690000	52828	2578	49754	319170;319171;319172;319173;319174;319175;319176;319177;319178	429745;429746;429747;429748;429749;429750;429751;429752;429753;429754;429755	429754			11	
TYELTTDNMLK	1	Unmodified	1327.633	0.63296781	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	57.24	56.51	2	9.065E-06	50163	160511_QHF_FH_JSI9i_1	111.46	92.71			1.04	1.2617	26.801	3	3	Plateau	1.04	0.84348	NaN	1	1	Median	1.1771	1.3791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87685	0.89636	NaN	1	1	Median	144980000	60626000	84352000	42759000	18330000	24428000	47372000	15839000	31533000	0	0	0	54848000	26457000	28391000	52829	3009	49755	319179;319180;319181	429756;429757;429758	429758			3	
TYEQVLENLESK	1	Unmodified	1451.7144	0.71438925	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								2	2	1	2	61.53	60.633	2	1.5741E-07	53273	160511_QHF_FH_JSI9i_2	157.68	123.29			0.89586	0.93457	22.925	6	4	Median	1.0452	0.86998	24.056	2	1	Median	0.70944	0.84692	NaN	1	1	Median	0.59152	0.61173	NaN	1	0	Median	0.97383	1.0612	3.5494	2	2	Median	488210000	266110000	222100000	148220000	72994000	75229000	63733000	40305000	23428000	91158000	52401000	38757000	185090000	100410000	84683000	52830	2760	49756	319182;319183;319184;319185;319186;319187;319188	429759;429760;429761;429762;429763;429764;429765;429766	429762			8	
TYEVSLR	0	Unmodified	866.44978	0.44978213	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	33.283	32.705	2	0.013927	27591	160511_QHF_FH_JSI12i_2	67.032	39.912			1.0455	1.0328	13.781	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77502	0.93025	NaN	1	0	Median	1.1072	1.0979	8.6503	2	0	Median	0.92058	1.0079	22.15	2	0	Median	922680000	437470000	485200000	0	0	0	127340000	63127000	64215000	480040000	226300000	253740000	315290000	148050000	167240000	52831	2734	49757	319189;319190;319191;319192;319193	429767;429768	429767			2	
TYFGPYDETTCIDWTDDSR	0	Unmodified	2340.9481	0.94810695	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.2	6.37			3						2	4	1			64.646	60.252	3	0.0041156	49365	160511_QHF_FH_JSI9i_3	40.52	38.186			1.2941	1.1188	20.339	5	1	Median	1.4893	1.4538	17.21	4	1	Linear	0.80201	0.89836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157190000	59862000	97326000	135020000	49501000	85524000	22163000	10362000	11802000	0	0	0	0	0	0	52832	2647	49758	319194;319195;319196;319197;319198	429769;429770;429771;429772	429769			4	
TYFNILIKPETLAK	2	Unmodified	1649.9392	0.93924423	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	5.82		4	13						6	6	6	5	6	81.545	78.688	2;3	1.8444E-09	70249	160511_QHF_FH_JSI12i_3	113.65	95.84			0.84293	0.8263	9.3502	14	14	Median	1.0154	0.82146	12.043	4	4	Median	0.76038	0.89651	12.808	4	4	Median	0.86544	0.82785	6.4701	3	3	Plateau	0.80298	0.80931	1.1614	3	3	Plateau	2385000000	1289000000	1096000000	387550000	191500000	196050000	573040000	335470000	237570000	541840000	268510000	273330000	882600000	493560000	389050000	52833	387	49759	319199;319200;319201;319202;319203;319204;319205;319206;319207;319208;319209;319210;319211;319212;319213;319214;319215;319216;319217;319218;319219;319220;319221	429773;429774;429775;429776;429777;429778;429779;429780;429781;429782;429783;429784;429785;429786;429787;429788;429789;429790;429791;429792;429793;429794;429795;429796	429793			24	
TYFPHFDLSHGSAQVK	1	Unmodified	1832.8846	0.8845829	49;2079	CON__P01966;P69905	HBA1	Hemoglobin subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.87	5.6		5	18						7	9	11	5	5	63.076	60.136	2;3;4	2.5117E-31	51271	160511_QHF_FH_JSI12i_3	195.6	186.44		+	0.93667	0.96116	27.276	28	4	Median	0.96177	0.78296	32.722	8	1	Median	0.80279	0.96116	23.807	10	2	Median	1.1343	1.0882	11.297	5	0	Median	1.0853	1.1721	19.669	5	1	Median	15106000000	7357100000	7748900000	2240600000	1208200000	1032300000	3434300000	2286700000	1147600000	3768100000	1622200000	2146000000	5663000000	2240000000	3423000000	52834	49;2079	49760	319222;319223;319224;319225;319226;319227;319228;319229;319230;319231;319232;319233;319234;319235;319236;319237;319238;319239;319240;319241;319242;319243;319244;319245;319246;319247;319248;319249;319250;319251	429797;429798;429799;429800;429801;429802;429803;429804;429805;429806;429807;429808;429809;429810;429811;429812;429813;429814;429815;429816;429817;429818;429819;429820;429821;429822;429823;429824;429825;429826;429827;429828;429829;429830;429831;429832;429833;429834;429835;429836;429837;429838;429839;429840;429841;429842;429843;429844;429845;429846;429847;429848;429849;429850;429851	429838			53	
TYFSCTSAHTSTGDGTAMITR	0	Oxidation (M)	2279.9787	0.97869557	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.26		1	3						2	1	2	2	1	40.288	36.715	3	4.7098E-06	31482	160511_QHF_FH_JSI12i_3	68.952	65.553			1.0617	1.151	9.7124	6	0	Median	1.352	1.1503	NaN	1	0	Median	0.94462	1.1366	1.8784	2	0	Median	1.0683	1.0298	16.203	2	0	Median	1.1447	1.2066	NaN	1	0	Median	156310000	75058000	81250000	8580600	4327900	4252600	56475000	27952000	28523000	42595000	19304000	23291000	48658000	23474000	25183000	52835	1367	49761	319252;319253;319254;319255;319256;319257	429852;429853;429854;429855;429856;429857;429858	429858		1000	7	
TYFSCTSAHTSTGDGTAMITR	0	Unmodified	2263.9838	0.98378095	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	2	3	2	48.53	45.008	3	2.7635E-46	38577	160511_QHF_FH_JSI12i_3	201.61	197.17			0.85975	1.0325	19.241	9	0	Median	1.4787	1.2593	11.802	2	0	Median	0.80598	0.97402	8.247	2	0	Median	0.84343	0.81847	1.1673	3	0	Median	1.099	1.163	2.2041	2	0	Median	1137500000	595860000	541630000	125310000	56618000	68695000	294320000	157160000	137160000	453940000	238250000	215690000	263910000	143830000	120080000	52836	1367	49761	319258;319259;319260;319261;319262;319263;319264;319265;319266	429859;429860;429861;429862;429863;429864;429865;429866;429867;429868;429869;429870;429871	429870			13	
TYFTDKK	2	Unmodified	901.45453	0.45453316	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							3	5	2	4	13.573	13.117	2;3	0.002011	9996	160511_QHF_FH_JSI12i_3	83.753	44.09			1.0962	1.2179	80.607	14	12	Median	0.86795	0.70378	78.927	3	3	Median	1.1065	1.2513	62.731	5	3	Median	1.3087	1.258	115.69	2	2	Median	1.6662	1.7398	115.44	4	4	Median	4781400000	2620400000	2161000000	226720000	108400000	118320000	562080000	307220000	254860000	907030000	414230000	492800000	3085600000	1790500000	1295100000	52837	1299	49762	319267;319268;319269;319270;319271;319272;319273;319274;319275;319276;319277;319278;319279;319280	429872;429873;429874;429875;429876;429877;429878;429879;429880;429881;429882;429883;429884;429885;429886	429884			15	
TYFTDKK	2	Acetyl (K)	943.4651	0.46509784	1299	P27824	CANX	Calnexin	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	37.407	28.831	2	0.061034	16398	160513_QHF_FH_JSI12Kac_3	67.032	33.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2880600	2880600	0	0	0	0	0	0	0	0	0	0	2880600	2880600	0	52838	1299	49762	319281	429887	429887			1	
TYFYQLWYDQDYAR	0	Unmodified	1930.8526	0.85261407	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	88.431	79.916	2;3	9.5972E-97	44292	160513_QHF_FH_JSI11Kac_6	253.88	242.02			1.2593	1.1828	9.0465	5	1	Median	1.4331	1.2115	NaN	1	0	Median	0.96557	1.1481	NaN	1	0	Median	1.2593	1.1828	NaN	1	0	Median	1.1481	1.2218	17.283	2	1	Median	1039600000	523550000	516010000	220570000	100030000	120540000	405610000	223080000	182530000	140620000	62305000	78320000	272760000	138140000	134620000	52839	1273	49763	319282;319283;319284;319285;319286	429888;429889;429890;429891;429892;429893;429894;429895;429896	429889			9	
TYGADLASVDFQHASEDAR	0	Unmodified	2051.9185	0.9184618	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.6	0.49	2	3								1	2	2		58.458	57.907	3	8.9557E-10	51113	160511_QHF_FH_JSI10i_2	117.84	108.67			0.89015	0.863	19.767	4	1	Median	NaN	NaN	NaN	0	0	Median	0.84365	1.0019	30.209	2	0	Median	0.89015	0.863	6.0745	2	1	Median	NaN	NaN	NaN	0	0	Median	305800000	170470000	135330000	0	0	0	123160000	66143000	57019000	182640000	104330000	78310000	0	0	0	52840	1363	49764	319287;319288;319289;319290;319291	429897;429898;429899;429900;429901	429901			5	
TYGADLASVDFQHASEDARK	1	Unmodified	2180.0134	0.013424818	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							3	2	5	4	53.316	52.655	3;4	3.404E-83	45074	160511_QHF_FH_JSI12i_3	206.98	196.6			0.95626	0.97112	9.6826	14	4	Median	1.1901	1.0071	5.303	3	2	Median	0.8557	1.0477	1.5541	2	0	Median	0.96579	0.96737	6.4697	5	2	Median	0.78416	0.87255	9.9192	4	0	Linear	4705900000	2413100000	2292900000	448840000	211460000	237380000	567860000	345110000	222750000	2461900000	1195400000	1266500000	1227400000	661110000	566240000	52841	1363	49765	319292;319293;319294;319295;319296;319297;319298;319299;319300;319301;319302;319303;319304;319305	429902;429903;429904;429905;429906;429907;429908;429909;429910;429911;429912;429913;429914;429915;429916;429917;429918;429919;429920;429921;429922;429923;429924;429925;429926;429927;429928;429929;429930;429931;429932;429933	429932			32	
TYGEIFEK	1	Unmodified	985.47566	0.47566253	674	O95298	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			42.151	41.185	2	0.031155	36313	160511_QHF_FH_JSI10i_2	41.427	30.959			0.74757	0.91441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74757	0.91441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	83472000	57208000	26264000	0	0	0	83472000	57208000	26264000	0	0	0	0	0	0	52842	674	49766	319306	429934	429934			1	
TYGEIFEKFHPIR	1	Acetyl (K)	1677.8515	0.85149185	674	O95298	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.592	71.278	3	0.00014884	39117	160513_QHF_FH_JSI11Kac_6	83.615	72.175			0.59007	0.57215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59007	0.57215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69668000	44120000	25548000	0	0	0	0	0	0	69668000	44120000	25548000	0	0	0	52843	674	49767	319307	429935	429935	333		1	
TYGEPESAGPSR	0	Unmodified	1249.5575	0.55749468	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.27	4					2	3			1	2	3	3	18.657	15.14	2	7.3078E-08	12816	160511_QHF_FH_JSI9i_1	164.97	156.01			1.0963	1.0483	20.399	7	0	Median	1.2716	1.0483	NaN	1	0	Median	0.86312	1.022	NaN	1	0	Median	1.0963	1.0495	7.7326	3	0	Median	1.1854	1.2543	43.781	2	0	Median	1925400000	951260000	974130000	470390000	199610000	270780000	487350000	261870000	225480000	474340000	230240000	244100000	493310000	259540000	233770000	52844	1703	49768	319308;319309;319310;319311;319312;319313;319314;319315;319316	429936;429937;429938;429939;429940;429941;429942;429943;429944;429945;429946;429947	429945			10	
TYGESMLYLDGQR	0	Unmodified	1531.6977	0.69769333	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.575	58.65	2	2.2682E-06	50241	160511_QHF_FH_JSI12i_2	149.23	128.36			0.94651	0.98998	16.573	4	2	Median	1.4166	1.1953	NaN	1	1	Median	0.6589	0.80197	NaN	1	1	Median	0.9562	0.95472	NaN	1	0	Median	0.93692	1.0265	NaN	1	0	Median	273720000	140400000	133320000	53256000	20287000	32970000	62518000	39044000	23474000	99811000	49449000	50362000	58136000	31621000	26516000	52845	5552	49769	319317;319318;319319;319320	429948;429949;429950;429951;429952;429953	429949			6	
TYGFHFTTPALVVEK	1	Unmodified	1708.8825	0.88245763	312	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	4	3	4	78.943	76.007	2;3	3.7548E-07	67494	160511_QHF_FH_JSI12i_3	132.08	119.72			1.0263	0.98644	42.388	14	2	Median	1.2164	0.98632	1.4363	3	0	Plateau	0.80873	0.94852	6.0365	4	0	Median	0.97815	0.95711	50.307	3	1	Median	1.1007	1.1714	72.135	4	1	Median	1709700000	817390000	892350000	208810000	97436000	111370000	324680000	171630000	153050000	502200000	182160000	320040000	674050000	366160000	307890000	52846	312	49770	319321;319322;319323;319324;319325;319326;319327;319328;319329;319330;319331;319332;319333;319334	429954;429955;429956;429957;429958;429959;429960;429961;429962;429963;429964;429965;429966;429967;429968;429969;429970;429971;429972;429973;429974;429975	429972			22	
TYGGCEGPDAMYVK	1	Unmodified	1546.6432	0.64321492	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	41.549	40.904	2	6.7162E-30	37118	160511_QHF_FH_JSI12i_1	190.15	183.3			1.1604	1.0412	15.063	4	2	Median	1.1583	0.96006	NaN	1	1	Median	0.75444	0.87911	NaN	1	1	Median	1.1656	1.1293	NaN	1	0	Median	1.1626	1.2244	NaN	1	0	Median	605770000	290960000	314810000	57807000	21413000	36394000	155450000	85217000	70232000	166480000	85371000	81112000	226030000	98964000	127070000	52847	2658	49771	319335;319336;319337;319338;319339	429976;429977;429978;429979;429980;429981;429982;429983	429980			8	
TYGGCEGPDAMYVK	1	Oxidation (M)	1562.6381	0.63812954	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	32.075	31.498	2	0.03611	28375	160511_QHF_FH_JSI12i_1	59.542	52.689			1.0853	1.1032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0853	1.1032	NaN	1	1	Median	18374000	10733000	7641600	0	0	0	0	0	0	0	0	0	18374000	10733000	7641600	52848	2658	49771	319340	429984	429984			1	
TYGLVGYMR	0	Unmodified	1058.5219	0.52190122	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.123	52.862	2	0.0013933	28713	160513_QHF_FH_JSI11Kac_6	85.642	75.174			0.85009	0.88832	14.23	4	0	Linear	1.1278	0.99271	NaN	1	0	Median	0.79432	0.91893	NaN	1	0	Median	1.0128	0.95342	NaN	1	0	Median	1.1707	1.2599	NaN	1	0	Median	120790000	64739000	56049000	28526000	14944000	13582000	55842000	31786000	24056000	28867000	15185000	13682000	7553700	2824700	4729000	52849	2442	49772	319341;319342;319343;319344	429985;429986;429987;429988;429989;429990	429986			6	
TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK	1	Unmodified	3761.7283	0.72828854	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	94.156	85.971	4	2.2821E-151	46180	160513_QHF_FH_JSI12Kac_6	257.08	248.39			0.99359	1.055	29.416	3	0	Median	NaN	NaN	NaN	0	0	Median	0.57908	0.66917	NaN	1	0	Median	1.222	1.1603	NaN	1	0	Median	0.99359	1.055	NaN	1	0	Median	371930000	170600000	201340000	0	0	0	109070000	65559000	43509000	131120000	53996000	77126000	131740000	51043000	80701000	52850	2343	49773	319345;319346;319347	429991;429992;429993;429994;429995	429993			5	
TYGQSTYSR	0	Unmodified	1061.4778	0.47778779	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.3	5.14	3	4	1				1	1		2	2	3	3	11.693	9.7043	2	4.7543E-06	7945	160511_QHF_FH_JSI12i_2	118.18	61.63			1.0969	1.0803	13.931	10	0	Median	1.394	1.1877	20.06	2	0	Median	0.82896	1.0022	10.213	2	0	Median	1.0906	1.0833	15.402	3	0	Median	1.1152	1.2087	10.067	3	0	Median	1263600000	627870000	635770000	150510000	61272000	89234000	325960000	181240000	144720000	439600000	219540000	220050000	347570000	165810000	181760000	52851	1449	49774	319348;319349;319350;319351;319352;319353;319354;319355;319356;319357	429996;429997;429998;429999;430000;430001;430002;430003;430004;430005;430006;430007;430008	429997			13	
TYGSEFVYSDHAK	1	Unmodified	1502.6678	0.66777341	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		34.85	34.427	3	0.00024499	29289	160511_QHF_FH_JSI11i_2	76.357	71.359			1.4301	1.4397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4301	1.4397	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69190000	26252000	42938000	0	0	0	0	0	0	69190000	26252000	42938000	0	0	0	52852	486	49775	319358	430009	430009			1	
TYGTSGLDNRPLFGETSAK	1	Unmodified	2012.9803	0.98033378	4435	Q9BU79	TMEM243	Transmembrane protein 243	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		51.74	51.74	3	5.905E-05	45768	160511_QHF_FH_JSI11i_3	67.995	50.506			1.4376	1.3074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4376	1.3074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51886000	21907000	29980000	0	0	0	0	0	0	51886000	21907000	29980000	0	0	0	52853	4435	49776	319359	430010;430011	430010			2	
TYGTTTAPRDEDGSTLFR	0	Unmodified	1986.9283	0.9282982	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		42.831	42.831	3	0.05616	37717	160511_QHF_FH_JSI11i_3	25.611	10.219			0.53568	0.49858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53568	0.49858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67487000	41484000	26003000	0	0	0	0	0	0	67487000	41484000	26003000	0	0	0	52854	4581	49777	319360	430012	430012			1	
TYGVSFFLVK	1	Unmodified	1159.6277	0.6277465	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	4	3	86.31	83.141	2	9.4455E-18	40282	160513_QHF_FH_JSI12Kac_6	171.36	146.44			0.96375	0.96216	11.438	12	2	Median	1.2195	1.0492	11.229	3	1	Median	0.83654	0.99454	9.0297	3	0	Median	0.99112	0.93083	15.387	3	1	Median	0.83885	0.91314	15.187	3	0	Median	6449700000	3430700000	3018900000	1708700000	855410000	853320000	2055600000	1138500000	917080000	1392800000	712590000	680210000	1292500000	724210000	568330000	52855	5616;5628	49778	319361;319362;319363;319364;319365;319366;319367;319368;319369;319370;319371;319372;319373	430013;430014;430015;430016;430017;430018;430019;430020;430021;430022;430023;430024;430025;430026;430027;430028;430029;430030;430031;430032	430031			20	
TYHAIQK	1	Unmodified	859.4552	0.45520186	3466	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.2017	7.2505	2	0.033424	4674	160511_QHF_FH_JSI12i_3	54.787	41.115			1.515	1.4715	44.559	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1609	2.0165	NaN	1	1	Median	1.0622	1.0738	NaN	1	0	Median	131810000	52646000	79169000	0	0	0	0	0	0	46656000	19974000	26682000	85159000	32672000	52486000	52856	3466	49779	319374;319375	430033;430034;430035	430034			3	
TYHALSNLPK	1	Unmodified	1142.6084	0.60840804	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.62	6.84		5	2						6	5	2	2	4	34.362	29.584	2;3	2.3473E-05	25615	160511_QHF_FH_JSI9i_2	97.965	76.459			0.95744	0.95765	18.627	13	1	Median	1.3563	1.1488	17.321	5	1	Median	0.73698	0.82646	7.9595	2	0	Median	1.0858	1.0716	15.749	2	0	Median	0.77844	0.85757	12.017	4	0	Median	10480000000	5108900000	5370600000	481690000	200390000	281300000	7875200000	3771100000	4104000000	17606000	9835200	7771100	2105100000	1127600000	977500000	52857	109	49780	319376;319377;319378;319379;319380;319381;319382;319383;319384;319385;319386;319387;319388	430036;430037;430038;430039;430040;430041;430042;430043;430044;430045;430046;430047;430048;430049;430050;430051;430052	430043			17	
TYHMVGLAYPAAVIVTLK	1	Unmodified	1946.0699	0.069940826	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									4	2	2			86.39	79.23	2;3	4.2702E-18	45051	160513_QHF_FH_JSI10Kac_6	127.22	117.02			0.82313	0.90043	14.476	4	1	Median	0.99009	0.84236	23.096	2	1	Median	0.76178	0.90043	7.1285	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	465890000	247620000	218270000	162140000	85357000	76779000	303760000	162260000	141490000	0	0	0	0	0	0	52858	1832	49781	319389;319390;319391;319392	430053;430054;430055;430056;430057	430056			5	
TYHSVGDSVLR	0	Unmodified	1232.6149	0.61494998	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	25.924	25.336	2;3	0.0011921	21452	160511_QHF_FH_JSI11i_3	70.1	57.864			1.0022	1.0719	27.124	4	1	Median	1.6907	1.4546	NaN	1	0	Median	1.1106	1.2883	NaN	1	1	Median	0.87524	0.83769	NaN	1	0	Median	0.90437	0.89189	NaN	1	0	Median	143490000	69857000	73632000	44371000	23035000	21336000	10688000	3925300	6762700	55544000	27741000	27803000	32885000	15155000	17730000	52859	1005	49782	319393;319394;319395;319396;319397	430058;430059;430060;430061;430062	430059			3	
TYHWASFK	1	Unmodified	1038.4923	0.49231565	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	37.585	36.808	3	0.001672	31088	160511_QHF_FH_JSI10i_3	55.549	50.009			0.97123	0.69432	26.881	4	2	Linear	1.8092	1.486	NaN	1	1	Median	0.76546	0.87361	NaN	1	0	Median	1.1562	1.0947	NaN	1	1	Median	0.81583	0.82017	NaN	1	0	Median	220640000	107540000	113100000	40239000	13966000	26274000	36416000	19104000	17312000	57094000	25258000	31836000	86893000	49214000	37680000	52860	1631	49783	319398;319399;319400;319401	430063;430064;430065;430066	430065			4	
TYIGEIFTQILVLPYVGK	1	Unmodified	2053.15	0.14996529	1425	P35237	SERPINB6	Serpin B6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		6	6						8	5	6	6	3	101.98	98.566	2;3	7.6955E-168	52027	160513_QHF_FH_JSI11Kac_6	356.88	295.53			0.97531	0.95239	9.5457	20	1	Median	1.0603	0.90205	12.663	5	0	Plateau	0.80956	0.9623	10.968	6	1	Median	1.0059	0.9551	4.5151	6	0	Median	0.83704	0.8705	3.3191	3	0	Median	11466000000	6034500000	5431200000	3192400000	1530500000	1662000000	3673800000	2016200000	1657500000	1333700000	661810000	671900000	3265800000	1826000000	1439800000	52861	1425	49784	319402;319403;319404;319405;319406;319407;319408;319409;319410;319411;319412;319413;319414;319415;319416;319417;319418;319419;319420;319421	430067;430068;430069;430070;430071;430072;430073;430074;430075;430076;430077;430078;430079;430080;430081;430082;430083;430084;430085;430086;430087;430088;430089;430090;430091;430092;430093;430094;430095;430096;430097;430098;430099;430100;430101;430102;430103	430075			37	
TYINPFVSFLDQR	0	Unmodified	1598.8093	0.80929269	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.16	101.17	2	0.00020454	87786	160511_QHF_FH_JSI12i_3	80.318	0			1.1838	1.1758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1838	1.1758	NaN	1	0	Median	76490000	29551000	46939000	0	0	0	0	0	0	0	0	0	76490000	29551000	46939000	52862	700	49785	319422	430104	430104			1	
TYIPPKGETK	2	Unmodified	1132.6128	0.61282471	928	P09429;B2RPK0	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	yes	no	0	0	0	1			By MS/MS	By MS/MS	3	0			6									1	5	15.483	15.531	2;3	0.0049319	12360	160511_QHF_FH_JSI12i_3	51.998	45.677			0.9132	0.86923	6.8329	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9132	0.85827	NaN	1	1	Median	0.9084	0.91301	6.9861	4	2	Median	363650000	189740000	173910000	0	0	0	0	0	0	46026000	24170000	21856000	317620000	165570000	152050000	52863	928	49786	319423;319424;319425;319426;319427;319428	430105;430106;430107;430108;430109;430110;430111	430109			7	
TYIPVMSGENK	1	Unmodified	1237.6013	0.60127375	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			62.999	61.487	3	0.045861	51503	160511_QHF_FH_JSI10i_3	12.957	5.9388			1.0917	1.2374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0917	1.2374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40914000	25817000	15097000	0	0	0	40914000	25817000	15097000	0	0	0	0	0	0	52864	3821	49787	319429	430112	430112			1	
TYIQCIAAISR	0	Unmodified	1294.6704	0.67035637	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.55	6.36		2	3					4	2	2	3	3	3	64.277	58.282	2	6.8736E-06	51748	160511_QHF_FH_JSI11i_3	113.63	104.87			1.2527	1.0988	26.131	11	5	Median	1.294	1.1102	1.4526	2	1	Median	0.85792	1.032	26.266	3	2	Median	0.86154	0.83748	12.07	3	1	Plateau	1.3135	1.3373	22.755	3	1	Plateau	441340000	212700000	228640000	41516000	16610000	24906000	113570000	53816000	59758000	168590000	89336000	79259000	117650000	52939000	64714000	52865	3343	49788	319430;319431;319432;319433;319434;319435;319436;319437;319438;319439;319440	430113;430114;430115;430116;430117;430118;430119;430120;430121;430122;430123;430124;430125;430126	430113			13	
TYIQLLIR	0	Unmodified	1018.6175	0.61751616	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By matching	By MS/MS			7.33	6.13			2						1	1	2			75.421	72.372	2	0.0025673	61348	160511_QHF_FH_JSI10i_3	79.116	58.596			0.91086	1.0878	3.6884	3	0	Plateau	1.233	1.0286	NaN	1	0	Median	0.92832	1.0953	0.96613	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118240000	52799000	65437000	12705000	6542300	6162600	105530000	46256000	59274000	0	0	0	0	0	0	52866	1895	49789	319441;319442;319443	430127;430128	430127			2	
TYIQTELPFK	1	Unmodified	1238.6547	0.65468953	727	O95785	WIZ	Protein Wiz	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		69.583	68.917	2	0.00041204	61175	160511_QHF_FH_JSI10i_2	75.378	66.465			0.88881	0.99962	22.104	4	0	Median	1.2118	1.0567	NaN	1	0	Median	0.80353	0.98939	NaN	1	0	Median	0.82241	0.8144	30.434	2	0	Median	NaN	NaN	NaN	0	0	Median	87950000	46803000	41147000	19130000	9855100	9275000	23713000	13027000	10686000	45107000	23921000	21186000	0	0	0	52867	727	49790	319444;319445;319446;319447	430129;430130;430131	430131			2	
TYITDPVSAPCAPPLQPK	1	Unmodified	1953.987	0.98699906	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	70.948	70.539	2	3.3032E-11	63794	160511_QHF_FH_JSI10i_1	137.16	120.63			0.46919	0.49888	40.018	2	2	Median	NaN	NaN	NaN	0	0	Median	0.57993	0.66204	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.37959	0.37592	NaN	1	1	Median	26662000	21776000	4885300	0	0	0	13854000	11610000	2244300	0	0	0	12808000	10167000	2641000	52868	3927	49791	319448;319449;319450	430132;430133;430134	430133			3	
TYLEEELDK	1	Unmodified	1138.5394	0.539385	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	46.528	44.163	2	2.577E-16	39070	160511_QHF_FH_JSI9i_1	174.02	109.19			0.99069	0.96183	19.145	5	0	Median	1.1273	0.93319	NaN	1	0	Median	0.80314	0.96183	NaN	1	0	Median	0.898	0.87559	NaN	1	0	Median	1.1441	1.2159	22.529	2	0	Median	2626600000	1323000000	1303500000	527510000	269440000	258070000	700200000	390030000	310170000	805310000	360460000	444860000	593560000	303110000	290450000	52869	2757	49792	319451;319452;319453;319454;319455	430135;430136;430137;430138;430139;430140;430141;430142;430143;430144;430145	430142			11	
TYLLDFR	0	Unmodified	926.48617	0.48616764	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.968	68.073	2	0.0040644	59432	160511_QHF_FH_JSI11i_2	100.45	48.763			0.96257	1.02	13.566	4	0	Median	1.4372	1.2571	NaN	1	0	Median	0.73304	0.91047	NaN	1	0	Median	1.0284	1.0417	NaN	1	0	Median	0.90093	0.99881	NaN	1	0	Median	107920000	60115000	47804000	18721000	8393400	10328000	24316000	13273000	11042000	34272000	19036000	15235000	30612000	19412000	11200000	52870	2356	49793	319456;319457;319458;319459	430146;430147;430148;430149;430150;430151;430152;430153	430151			8	
TYLLFFPNDEVMNQNLAYYAAMLGEEHTR	0	Unmodified	3449.606	0.60604814	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	97.543	89.961	3	1.3171E-84	48357	160513_QHF_FH_JSI12Kac_6	209.07	199.44			1.3212	1.4793	5.2285	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2982	1.535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3446	1.4256	NaN	1	0	Median	661730000	225740000	435990000	0	0	0	344190000	103440000	240750000	0	0	0	317540000	122300000	195240000	52871	2806	49794	319460;319461	430154;430155	430154			2	
TYLPDFR	0	Unmodified	910.45487	0.45486751	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.49	2	4	1					2		2	2	2	3	55.961	54.009	2	0.0012559	46726	160511_QHF_FH_JSI11i_2	122.78	80.312			0.96183	1.0189	24.542	8	1	Median	1.2079	1.0617	NaN	1	0	Median	0.89412	1.0318	7.6102	2	0	Median	1.0969	1.0719	19.049	2	0	Median	0.86309	0.97172	43.422	3	1	Median	629050000	297300000	331760000	99757000	41032000	58725000	138650000	74941000	63708000	246380000	113090000	133280000	144270000	68230000	76040000	52872	2460	49795	319462;319463;319464;319465;319466;319467;319468;319469;319470	430156;430157;430158;430159;430160;430161;430162;430163;430164;430165	430161			10	
TYLPSQVSR	0	Unmodified	1049.5506	0.55055881	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.31	5.78	4	4	4					3	1	4	4	4	4	35.806	32.791	2	6.0004E-06	28664	160511_QHF_FH_JSI9i_2	113.71	96.467			0.90467	0.99027	13.614	16	0	Median	1.1656	1.0302	15.916	4	0	Median	0.81209	0.98951	15.584	4	0	Median	0.94794	0.94873	17.63	4	0	Median	0.87389	0.93412	8.9154	4	0	Median	2412600000	1243700000	1168900000	354220000	164710000	189510000	598490000	313700000	284790000	902130000	473100000	429040000	557740000	292150000	265600000	52873	1438	49796	319471;319472;319473;319474;319475;319476;319477;319478;319479;319480;319481;319482;319483;319484;319485;319486	430166;430167;430168;430169;430170;430171;430172;430173;430174;430175;430176;430177;430178;430179;430180;430181;430182;430183;430184;430185;430186;430187;430188;430189;430190;430191	430182			26	
TYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELVSK	1	Unmodified	4444.2413	0.24132285	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.26	96.539	4	0	57071	160513_QHF_FH_JSI10Kac_6	379.15	367.59			0.93489	1.1217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93489	1.1217	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	476950000	236760000	240200000	0	0	0	476950000	236760000	240200000	0	0	0	0	0	0	52874	485	49797	319487	430192;430193	430193			2	
TYLSEGPYYVK	1	Unmodified	1318.6445	0.64451877	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	52.842	52.076	2	3.3408E-13	45602	160511_QHF_FH_JSI9i_2	149.72	126.98			1.0386	0.98471	50.187	7	4	Median	1.0386	0.91241	NaN	1	0	Median	1.2731	1.5558	66.587	2	1	Median	1.468	1.4364	53.392	2	1	Median	1.1322	1.2331	75.418	2	2	Median	1226700000	511930000	714740000	131080000	71145000	59934000	403330000	149800000	253530000	315430000	113990000	201430000	376840000	177000000	199840000	52875	2730	49798	319488;319489;319490;319491;319492;319493;319494	430194;430195;430196;430197;430198;430199;430200	430198			7	
TYMDVMR	0	Unmodified	914.39901	0.39900889	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	36.628	35.712	2	0.0083606	30330	160511_QHF_FH_JSI12i_2	83.801	71.896			2.5304	2.5711	15.33	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.6533	1.9817	NaN	1	0	Median	2.5304	2.5711	NaN	1	0	Median	2.3157	2.597	NaN	1	0	Median	608350000	182100000	426260000	0	0	0	153560000	56475000	97081000	293080000	71544000	221540000	161720000	54077000	107640000	52876	542	49799	319495;319496;319497	430201;430202;430203	430201			3	
TYNASITLQQQLK	1	Unmodified	1506.8042	0.80420731	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	54.26	53.369	2	1.8016E-10	48116	160511_QHF_FH_JSI10i_1	149.96	133.82			0.9064	0.9815	30.492	10	5	Median	1.6308	1.3771	44.548	3	2	Plateau	0.80288	0.94653	18.042	2	1	Median	1.1044	1.1138	27.125	2	0	Median	0.98334	1.0477	34.34	3	2	Median	351610000	168800000	182810000	78951000	35537000	43414000	103010000	52276000	50731000	79948000	35578000	44370000	89701000	45407000	44294000	52877	998	49800	319498;319499;319500;319501;319502;319503;319504;319505;319506;319507	430204;430205;430206;430207;430208;430209;430210;430211;430212;430213;430214;430215	430209			11	
TYNEPGSQVFK	1	Unmodified	1268.6037	0.60371659	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		36.763	36.449	2	0.00045305	32583	160511_QHF_FH_JSI10i_1	86.882	46.823			0.55213	0.58888	30.599	2	2	Median	NaN	NaN	NaN	0	0	Median	0.40753	0.47431	NaN	1	1	Median	0.74804	0.73113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	95257000	58173000	37085000	0	0	0	39812000	27060000	12752000	55445000	31113000	24333000	0	0	0	52878	3318	49801	319508;319509;319510	430216;430217;430218	430217			3	
TYNFLPEFLVSTQK	1	Unmodified	1685.8665	0.86647322	1363	P30740	SERPINB1	Leukocyte elastase inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.596	1	8	6							3	3	4	5	101.07	100.99	2;3	4.8784E-31	87658	160511_QHF_FH_JSI12i_3	158.4	99.7			0.80062	0.89266	30.404	14	7	Linear	1.2042	1.0407	54.189	3	2	Plateau	0.93707	1.0943	30.282	3	1	Median	1.023	1.0122	16.646	4	2	Linear	1.1281	1.2063	13.164	4	2	Median	3173000000	1580900000	1592200000	471750000	214620000	257130000	731770000	407810000	323960000	877380000	423930000	453440000	1092200000	534510000	557650000	52879	1363	49802	319511;319512;319513;319514;319515;319516;319517;319518;319519;319520;319521;319522;319523;319524;319525	430219;430220;430221;430222;430223;430224;430225;430226;430227;430228;430229;430230;430231;430232;430233;430234	430234			16	
TYNTDVPLVLMNSFNTDEDTKK	2	Unmodified	2544.2054	0.20538427	2772	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							1	3	3	4	91.445	91.128	3	2.3172E-18	78943	160511_QHF_FH_JSI12i_3	137.64	129.74			1.1163	1.1592	15.87	11	5	Median	1.1163	0.96443	NaN	1	0	Median	0.9299	1.1515	5.8645	3	2	Plateau	1.2128	1.1241	10.725	3	0	Median	1.3423	1.3715	19.431	4	3	Median	748540000	362560000	385990000	79353000	44373000	34980000	235050000	120520000	114520000	195830000	94651000	101180000	238310000	103010000	135300000	52880	2772	49803	319526;319527;319528;319529;319530;319531;319532;319533;319534;319535;319536	430235;430236;430237;430238;430239;430240;430241;430242;430243;430244;430245;430246;430247;430248;430249;430250;430251;430252;430253;430254;430255;430256;430257;430258	430258			24	
TYNVTDDK	1	Unmodified	954.42944	0.42944062	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	14.479	13.933	2	0.0021049	11527	160511_QHF_FH_JSI10i_1	91.853	39.364			0.89285	0.88524	10.756	3	1	Median	1.0393	0.86597	NaN	1	0	Median	0.89285	1.0538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83197	0.88524	NaN	1	0	Median	329070000	174890000	154180000	97612000	41510000	56102000	123210000	67520000	55690000	0	0	0	108240000	65855000	42388000	52881	2535	49804	319537;319538;319539	430259;430260;430261;430262	430260			4	
TYPEWHVATEPVATWQNIQAAGTQK	1	Unmodified	2825.3773	0.37729247	2773	Q16854	DGUOK	Deoxyguanosine kinase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	83.601	83.41	3	4.8873E-05	72495	160511_QHF_FH_JSI12i_3	50.426	43.628			0.74637	0.76376	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74637	0.76376	NaN	1	0	Median	50565000	26288000	24277000	0	0	0	0	0	0	0	0	0	50565000	26288000	24277000	52882	2773	49805	319540	430263	430263			1	
TYPGVMHSSCPQEMAAVK	1	Unmodified	1991.8903	0.89033826	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.108	46.987	3	2.7905E-05	40128	160511_QHF_FH_JSI12i_3	73.809	58.887			1.2525	1.1985	74.38	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77682	0.7083	NaN	1	0	Median	2.0193	2.0279	NaN	1	0	Median	158550000	77638000	80914000	0	0	0	0	0	0	71339000	44615000	26724000	87213000	33023000	54191000	52883	685	49806	319541;319542	430264;430265;430266;430267;430268	430267			5	
TYPVNTPERWEK	1	Unmodified	1518.7467	0.74669243	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By matching		3	0			2								1	1		41.098	40.338	3	0.0005032	33801	160511_QHF_FH_JSI10i_3	64.65	49.264			0.83183	0.87821	3.7026	2	0	Median	NaN	NaN	NaN	0	0	Median	0.74101	0.85551	NaN	1	0	Median	0.93379	0.9015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133240000	61389000	71854000	0	0	0	71016000	30520000	40496000	62227000	30869000	31358000	0	0	0	52884	4282	49807	319543;319544	430269	430269			1	
TYQAFMWALYK	1	Unmodified	1420.6849	0.6849438	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	85.944	77.683	2	2.2366E-10	44277	160513_QHF_FH_JSI10Kac_6	123.63	95.883			1.0704	1.184	30.268	4	1	Median	0.76017	0.65488	NaN	1	0	Median	1.0398	1.2042	NaN	1	1	Median	1.2751	1.226	NaN	1	0	Median	1.1019	1.1643	NaN	1	0	Median	371100000	165470000	205630000	86368000	41073000	45296000	86381000	43201000	43180000	118650000	47516000	71132000	79702000	33683000	46019000	52885	4228	49808	319545;319546;319547;319548;319549	430270;430271;430272;430273;430274;430275;430276	430276			7	
TYQDIQNTIKK	2	Unmodified	1350.7143	0.71432967	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	28.299	28.254	3	0.015677	23750	160511_QHF_FH_JSI12i_3	39.016	31.977			0.7273	0.72082	34.873	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7273	0.72082	34.873	2	2	Median	57871000	37799000	20071000	0	0	0	0	0	0	0	0	0	57871000	37799000	20071000	52886	1251	49809	319550;319551	430277;430278	430278			2	
TYQELLVNQNPIAQPLASR	0	Unmodified	2154.1433	0.14331678	5089	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.434	77.96	2;3	2.7207E-11	70654	160511_QHF_FH_JSI10i_1	174.62	138.88			0.83169	0.91421	23.935	4	2	Linear	1.7314	1.4106	NaN	1	1	Median	0.73022	0.82319	NaN	1	0	Median	1.1437	1.1027	NaN	1	0	Median	1.2259	1.3103	NaN	1	1	Median	77647000	33991000	43657000	14509000	5295000	9214400	20615000	10490000	10125000	19671000	7212900	12458000	22852000	10992000	11860000	52887	5089	49810	319552;319553;319554;319555	430279;430280;430281;430282	430281			4	
TYQLVYFLDK	1	Unmodified	1288.6703	0.67033959	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.33		4	1					4	6	5	4	3	3	85.76	79.577	2	7.5251E-26	40281	160513_QHF_FH_JSI12Kac_6	182.64	160.55			0.96599	0.93949	21.216	15	5	Median	1.0364	0.89722	15.637	5	2	Median	0.72988	0.87035	15.705	4	2	Median	0.8168	0.81212	40.826	3	0	Plateau	0.97495	1.075	21.497	3	1	Median	5020500000	2700500000	2320000000	1380800000	700190000	680570000	2007200000	1169700000	837480000	966290000	454290000	512000000	666300000	376330000	289970000	52888	4715	49811	319556;319557;319558;319559;319560;319561;319562;319563;319564;319565;319566;319567;319568;319569;319570	430283;430284;430285;430286;430287;430288;430289;430290;430291;430292;430293;430294;430295;430296;430297;430298;430299;430300;430301;430302;430303;430304;430305;430306	430304			24	
TYQVKPIR	1	Unmodified	1003.5815	0.581465	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				19.647	18.446	3	0.027268	14804	160511_QHF_FH_JSI9i_3	34.089	22.375			1.2019	0.98943	NaN	1	0	Median	1.2019	0.98943	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119380000	49477000	69906000	119380000	49477000	69906000	0	0	0	0	0	0	0	0	0	52889	1712	49812	319571	430307	430307			1	
TYRPELIK	1	Unmodified	1018.5811	0.58113065	3732	Q8TEA8	DTD1	D-tyrosyl-tRNA(Tyr) deacylase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	29.248	28.553	3	0.017251	24428	160511_QHF_FH_JSI11i_3	39.305	23.102			0.80795	0.87973	11.372	4	0	Linear	1.1393	0.89914	NaN	1	0	Median	0.77346	0.87181	NaN	1	0	Median	0.84396	0.80011	NaN	1	0	Median	0.67237	0.6974	NaN	1	0	Median	479490000	239470000	240030000	166650000	80126000	86520000	142820000	85891000	56928000	131220000	52385000	78830000	38812000	21064000	17748000	52890	3732	49813	319572;319573;319574;319575	430308;430309;430310;430311	430308			4	
TYSAKLDNAR	1	Acetyl (K)	1179.5884	0.58840088	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0.632						1	3	1			1	1	3	35.199	25.968	2	4.3475E-08	15235	160513_QHF_FH_JSI10Kac_4	135.86	112.43			0.83983	0.9219	65.737	5	1	Median	NaN	NaN	NaN	0	0	Median	0.87025	1.044	NaN	1	0	Median	0.58662	0.56601	NaN	1	0	Median	0.83983	0.9219	75.558	3	1	Median	121840000	69209000	52633000	0	0	0	36521000	19225000	17296000	44836000	28578000	16258000	40485000	21406000	19079000	52891	791	49814	319576;319577;319578;319579;319580	430312;430313;430314;430315;430316;430317;430318	430312	415		7	
TYSAPAINAIQGGSFESPKK	2	Unmodified	2065.048	0.04801941	4725	Q9H4L5	OSBPL3	Oxysterol-binding protein-related protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		59.702	58.937	3	2.1321E-05	52237	160511_QHF_FH_JSI11i_3	65.25	60.248			0.79903	0.84669	9.6688	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67196	0.79074	NaN	1	1	Median	0.95012	0.9066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59987000	29560000	30427000	0	0	0	17438000	8583800	8854000	42549000	20976000	21573000	0	0	0	52892	4725	49815	319581;319582	430319;430320	430319			2	
TYSDDHVK	1	Unmodified	963.42977	0.42977497	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			6.9755	6.5243	2	0.0042909	4525	160511_QHF_FH_JSI10i_2	68.383	49.652			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52893	344	49816	319583	430321	430321			1	
TYSLPEDDDFIK	1	Unmodified	1441.6613	0.66129105	2866	Q567U6	CCDC93	Coiled-coil domain-containing protein 93	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	68.715	68.067	2	3.9751E-05	60510	160511_QHF_FH_JSI9i_1	112.13	94.265			0.58371	0.26375	66.36	4	4	Linear	0.74037	0.6032	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4602	0.44446	NaN	1	1	Median	0.86565	0.90399	98.18	2	2	Median	98752000	59187000	39565000	24334000	15410000	8923700	0	0	0	33567000	21628000	11938000	40851000	22149000	18703000	52894	2866	49817	319584;319585;319586;319587	430322;430323;430324;430325;430326;430327	430327			6	
TYSTGLLGGAMENQDIAANYR	0	Unmodified	2244.0481	0.048095765	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0.816	1	1	1								1	1	1	66.82	66.303	3	0.049897	58994	160511_QHF_FH_JSI10i_2	18.015	4.9779			0.64502	0.78849	18.253	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.64502	0.78849	NaN	1	0	Median	0.80397	0.79512	NaN	1	1	Median	1.0521	1.0861	NaN	1	0	Median	411560000	250900000	160660000	0	0	0	224600000	155320000	69277000	129290000	71377000	57917000	57667000	24203000	33464000	52895	5620	49818	319588;319589;319590	430328;430329	430329			2	
TYSTSFTPMYHAVTK	1	Unmodified	1732.8131	0.81305744	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.97		5	6						4	4	5	3	3	55.104	51.948	2;3	1.4709E-33	28614	160513_QHF_FH_JSI10Kac_6	170.49	159.54			1.2712	1.2153	49.152	15	6	Median	1.1942	0.99097	30.455	4	0	Linear	1.0327	1.2084	17.904	5	2	Median	1.9801	1.8454	69.287	3	2	Median	0.84663	0.94124	90.388	3	2	Median	2761800000	1110800000	1651000000	604650000	228580000	376070000	1174700000	549700000	625030000	504530000	157980000	346550000	477910000	174570000	303330000	52896	765	49819	319591;319592;319593;319594;319595;319596;319597;319598;319599;319600;319601;319602;319603;319604;319605	430330;430331;430332;430333;430334;430335;430336;430337;430338;430339;430340;430341;430342;430343;430344;430345;430346;430347;430348;430349	430348			20	
TYSTSFTPMYHAVTK	1	Oxidation (M)	1748.808	0.80797206	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	11.5	6.02			2					1	3	2		1	3	50.302	42.401	2;3	1.2531E-05	36325	160511_QHF_FH_JSI12i_3	119.54	112.14			0.9748	0.90789	15.458	5	0	Median	1.1411	0.96703	24.871	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91976	0.90789	NaN	1	0	Median	0.91722	0.97795	17.269	2	0	Median	316980000	145810000	171170000	16592000	8151200	8441200	0	0	0	7995900	4869200	3126600	292390000	132790000	159600000	52897	765	49819	319606;319607;319608;319609;319610;319611	430350;430351;430352;430353;430354;430355;430356;430357;430358;430359	430355		273	10	
TYSVEYLPK	1	Unmodified	1098.5597	0.55972651	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	52.922	49.375	2	5.5641E-05	43571	160511_QHF_FH_JSI10i_2	97.635	86.414			1.0148	1.037	10.416	11	0	Median	1.1324	0.94283	5.2422	2	0	Median	0.86716	1.0016	6.5698	3	0	Median	1.0667	1.037	14.993	3	0	Median	1.0148	1.0801	6.9508	3	0	Median	1687100000	860690000	826390000	389990000	215430000	174560000	400090000	222760000	177330000	461020000	197890000	263130000	435980000	224610000	211360000	52898	512	49820	319612;319613;319614;319615;319616;319617;319618;319619;319620;319621;319622	430360;430361;430362;430363;430364;430365;430366;430367;430368;430369;430370;430371;430372;430373;430374;430375;430376;430377	430377			18	
TYSVPAHQER	0	Unmodified	1186.5731	0.57308516	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.51		6	2						2	2	2	4	2	15.293	12.718	3	2.4972E-06	10617	160511_QHF_FH_JSI11i_3	86.243	82.479			0.98609	1.0488	14.502	8	4	Median	1.3658	1.1995	NaN	1	1	Median	0.95617	1.1669	NaN	1	1	Median	1.015	0.99218	17.541	4	2	Median	0.96373	1.0488	4.9213	2	0	Median	812660000	385250000	427410000	99526000	45558000	53967000	127740000	56643000	71099000	332010000	154310000	177690000	253380000	128730000	124650000	52899	1810	49821	319623;319624;319625;319626;319627;319628;319629;319630;319631;319632	430378;430379;430380;430381;430382;430383;430384;430385;430386;430387;430388	430379			11	
TYSVVPMTSR	0	Unmodified	1139.5645	0.56449431	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.21	2	4	3				3	4		2	4	6	4	46.38	41.148	2	0.00061411	35337	160511_QHF_FH_JSI12i_3	70.816	63.756			0.90282	0.9995	18.731	15	1	Median	1.2517	1.0432	0.74164	2	0	Median	0.80122	0.97586	22.343	4	0	Median	0.95316	0.9828	8.2818	5	1	Median	0.85914	0.95451	30.579	4	0	Median	2727800000	1314900000	1412900000	411770000	179880000	231880000	688840000	346550000	342290000	1070600000	523460000	547170000	556600000	265040000	291560000	52900	2094	49822	319633;319634;319635;319636;319637;319638;319639;319640;319641;319642;319643;319644;319645;319646;319647;319648	430389;430390;430391;430392;430393;430394;430395;430396;430397;430398;430399;430400;430401;430402;430403;430404	430403			10	
TYSYLTPDLWK	1	Unmodified	1385.6867	0.68671794	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.89	5	3	2					4	4	4	5	5	4	81.586	76.776	2	1.5328E-36	39476	160513_QHF_FH_JSI9Kac_6	202.36	198.66			0.97491	1.0648	9.1785	17	1	Median	1.2712	1.0689	9.2151	4	0	Median	0.94414	1.1344	8.1835	5	1	Median	1.0711	1.0425	10.461	4	0	Median	0.9179	1.003	10.387	4	0	Median	8455100000	4273000000	4182100000	475060000	211040000	264020000	2388300000	1261800000	1126500000	3057000000	1515400000	1541600000	2534700000	1284800000	1249900000	52901	1084	49823	319649;319650;319651;319652;319653;319654;319655;319656;319657;319658;319659;319660;319661;319662;319663;319664;319665;319666	430405;430406;430407;430408;430409;430410;430411;430412;430413;430414;430415;430416;430417;430418;430419;430420;430421;430422;430423;430424;430425;430426;430427;430428;430429;430430;430431;430432;430433;430434;430435;430436;430437;430438;430439;430440;430441;430442	430439			38	
TYSYLTPDLWKETVFTK	2	Acetyl (K)	2133.067	0.067023518	1084	P15880	RPS2	40S ribosomal protein S2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		94.012	84.629	2	3.0581E-22	47791	160513_QHF_FH_JSI11Kac_6	192.18	149.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46280000	46280000	0	0	0	0	0	0	0	46280000	46280000	0	0	0	0	52902	1084	49824	319667	430443	430443	929;933		1	
TYTAYVDLEK	1	Unmodified	1201.5867	0.58666954	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.755	50.078	2	2.6854E-07	45089	160511_QHF_FH_JSI10i_1	127.4	119.18			0.9245	1.1092	9.5609	4	2	Linear	1.0525	0.87452	NaN	1	1	Median	0.90319	1.0709	NaN	1	0	Median	1.0224	0.98979	NaN	1	1	Median	1.016	1.0706	NaN	1	0	Median	1218500000	538470000	680010000	162360000	81912000	80445000	477890000	169170000	308730000	280900000	145550000	135350000	297330000	141840000	155490000	52903	1823	49825	319668;319669;319670;319671	430444;430445;430446;430447;430448;430449	430448			6	
TYTDELTPIESAVSVFK	1	Unmodified	1898.9513	0.95132506	534	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								2	2	2	3	101.16	101.05	2;3	3.5337E-183	91616	160511_QHF_FH_JSI12i_1	311.7	289.23			0.76049	0.8639	28.866	9	1	Median	0.90708	0.76783	42.071	2	1	Median	0.73514	0.86736	2.4428	2	0	Median	1.1415	1.1176	11.969	2	0	Median	0.76049	0.80136	30.86	3	0	Median	1263200000	689140000	574110000	205340000	106710000	98629000	287780000	156060000	131720000	304330000	146650000	157680000	465800000	279720000	186080000	52904	534	49826	319672;319673;319674;319675;319676;319677;319678;319679;319680	430450;430451;430452;430453;430454;430455;430456;430457;430458;430459;430460	430454			11	
TYTGHKNEK	2	Acetyl (K)	1118.5356	0.53563702	1971	P61964;Q86VZ2	WDR5;WDR5B	WD repeat-containing protein 5;WD repeat-containing protein 5B	yes	no	1	0	0	1			By MS/MS		15	0								2				2		6.639	-2.8846	3	0.003904	2339	160513_QHF_FH_JSI11Kac_5	64.73	43.86			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6235700	4560800	1674900	0	0	0	0	0	0	6235700	4560800	1674900	0	0	0	52905	1971	49827	319681;319682	430461;430462	430461	1992		2	
TYTHEVVTLWYR	0	Unmodified	1566.7831	0.78307794	1252	P24941;Q00526	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	69.221	60.251	2;3	2.2456E-40	32898	160513_QHF_FH_JSI10Kac_6	197.31	186.06			0.98643	1.0085	5.0994	7	0	Median	1.2003	1.0085	NaN	1	0	Median	0.81816	0.97504	2.5867	2	0	Median	1.1284	1.0671	6.2177	2	0	Median	0.9581	1.0278	5.1871	2	0	Median	1046400000	541580000	504830000	186060000	82660000	103400000	499260000	279140000	220120000	167820000	80409000	87414000	193260000	99367000	93893000	52906	1252	49828	319683;319684;319685;319686;319687;319688;319689	430463;430464;430465;430466;430467;430468;430469;430470;430471;430472;430473;430474;430475	430475			13	
TYTIANQFPLNK	1	Unmodified	1408.7351	0.73506511	4982	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.8	4	4	1					3		1	3	3	5	67.444	64.067	2	1.6266E-41	56881	160511_QHF_FH_JSI10i_2	240.38	227.42			1.0492	1.1724	48.484	11	6	Median	1.3921	1.1972	NaN	1	0	Median	0.87924	1.0669	37.747	3	2	Median	0.95056	0.94925	52.654	3	2	Plateau	1.0717	1.1463	65.738	4	2	Median	1107300000	516260000	591030000	180710000	75911000	104800000	294460000	155490000	138980000	309380000	155870000	153510000	322750000	129000000	193750000	52907	4982	49829	319690;319691;319692;319693;319694;319695;319696;319697;319698;319699;319700;319701	430476;430477;430478;430479;430480;430481;430482;430483;430484;430485;430486;430487;430488;430489;430490	430487			14	
TYTSQSIHQAVIAEQLAK	1	Unmodified	1987.0375	0.037454724	5455	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.02	53.902	3	4.2604E-05	46181	160511_QHF_FH_JSI12i_3	87.49	83.388			1.0442	1.0266	17.999	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2342	1.1659	NaN	1	1	Median	0.88347	0.9039	NaN	1	1	Median	220730000	118650000	102080000	0	0	0	0	0	0	109270000	57376000	51892000	111460000	61274000	50185000	52908	5455	49830	319702;319703	430491;430492	430492			2	
TYTWLKGHQK	2	Acetyl (K)	1302.6721	0.67207093	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.094	37.419	3	0.00016407	20422	160513_QHF_FH_JSI11Kac_6	88.056	73.025			0.34424	0.34606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34424	0.34606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7203100	5441000	1762100	0	0	0	0	0	0	7203100	5441000	1762100	0	0	0	52909	3173	49831	319704	430493	430493	2787		1	
TYTWNTK	1	Unmodified	912.43413	0.43413207	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		25.114	24.486	2	0.011246	20435	160511_QHF_FH_JSI11i_2	71.342	59.974			1.4202	1.5843	23.051	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5509	1.8648	NaN	1	1	Median	1.3005	1.346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	134910000	48393000	86513000	0	0	0	42491000	13693000	28798000	92415000	34699000	57716000	0	0	0	52910	521	49832	319705;319706;319707	430494;430495;430496;430497	430496			4	
TYTWNTKEEAK	2	Acetyl (K)	1411.662	0.66195975	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.28	37.765	2	0.033594	22361	160513_QHF_FH_JSI11Kac_4	65.347	46.567			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52911	521	49833	319708	430498	430498			1	
TYTYVWHATTR	0	Unmodified	1397.6728	0.67279921	67	CON__Q28107			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	47.926	38.558	2;3	0.0013214	21199	160513_QHF_FH_JSI10Kac_6	90.629	63.514		+	1.0833	1.018	12.615	5	0	Median	1.1308	0.98029	NaN	1	0	Median	0.87993	1.018	NaN	1	0	Median	1.1804	1.1498	NaN	1	0	Median	0.92637	1.0052	21.859	2	0	Median	91744000	46268000	45476000	10473000	3915200	6557700	52191000	28446000	23745000	11915000	4251700	7663400	17165000	9655900	7509300	52912	67	49834	319709;319710;319711;319712;319713;319714	430499;430500;430501;430502;430503;430504;430505	430504			3	
TYVDLTNEETTDSTTSK	1	Unmodified	1903.8535	0.85346151	703	O95551	TDP2	Tyrosyl-DNA phosphodiesterase 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	44.086	43.157	2	2.8435E-10	38357	160511_QHF_FH_JSI9i_1	147.18	133.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20719000	0	20719000	11551000	0	11551000	0	0	0	0	0	0	9168000	0	9168000	52913	703	49835	319715;319716	430506;430507	430507			2	
TYVGAMPGK	1	Unmodified	922.45824	0.45823833	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.62	3	2					2	3		1	3	3	3	31.852	27.841	2	0.00054245	23400	160511_QHF_FH_JSI12i_2	88.942	76.453			1.1427	1.1797	34.416	8	5	Median	1.1036	0.91861	NaN	1	1	Median	0.98333	1.205	57.269	3	2	Median	1.3484	1.3142	18.288	2	1	Median	1.0513	1.1158	22.116	2	1	Median	1005400000	524480000	480910000	3081900	1397100	1684800	388660000	216550000	172100000	231340000	110890000	120450000	382320000	195640000	186680000	52914	1459	49836	319717;319718;319719;319720;319721;319722;319723;319724;319725;319726	430508;430509;430510;430511;430512;430513;430514;430515;430516	430509			7	
TYVGPMTESLFPGYHTK	1	Unmodified	1926.9186	0.91858514	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	3	2	3	73.866	73.163	2;3	3.0796E-11	63395	160511_QHF_FH_JSI12i_3	121.82	114.11			1.1645	1.0576	12.239	9	1	Median	1.228	1.0299	3.748	2	0	Median	0.95446	1.1457	24.109	2	1	Median	1.1115	1.0453	10.862	2	0	Median	1.0964	1.1104	13.059	3	0	Median	1678500000	798300000	880170000	208010000	97636000	110380000	230990000	136960000	94031000	484520000	202410000	282110000	754950000	361290000	393660000	52915	430	49837	319727;319728;319729;319730;319731;319732;319733;319734;319735;319736	430517;430518;430519;430520;430521;430522;430523;430524;430525;430526;430527;430528;430529;430530;430531;430532	430530			16	
TYVPALEQSADGHK	1	Unmodified	1514.7365	0.73652168	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.29		3						5		1	2	3	2	44.1	37.782	3	0.00030091	32226	160511_QHF_FH_JSI12i_2	64.534	58.993			0.88528	1.0043	15.374	7	4	Median	NaN	NaN	NaN	0	0	Median	0.86581	1.0411	7.7595	2	1	Median	0.84768	0.82769	21.655	3	2	Median	0.96811	1.0547	6.9238	2	1	Median	186220000	98447000	87771000	0	0	0	49907000	29607000	20300000	72052000	43268000	28784000	64259000	25572000	38687000	52916	2140	49838	319737;319738;319739;319740;319741;319742;319743;319744	430533;430534;430535;430536;430537;430538	430533			6	
TYVPCLK	1	Unmodified	879.45242	0.45242467	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.507	40.136	2	0.018889	34225	160511_QHF_FH_JSI12i_2	59.205	39.728			0.88559	0.95453	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88559	0.95453	NaN	1	0	Median	32261000	15328000	16933000	0	0	0	0	0	0	0	0	0	32261000	15328000	16933000	52917	3960	49839	319745	430539	430539			1	
TYVTPPGTGFLPGDTAR	0	Unmodified	1748.8733	0.87334951	4899	Q9NPF4	OSGEP	Probable tRNA N6-adenosine threonylcarbamoyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	71.155	70.377	2	1.1696E-07	62499	160511_QHF_FH_JSI9i_1	127.37	103.03			0.91737	0.95496	18.126	8	6	Median	1.1274	0.94462	2.7025	2	1	Median	0.9531	1.1306	5.0241	2	1	Median	0.77014	0.77504	28.36	2	2	Median	0.88408	0.92811	5.8133	2	2	Median	194390000	100240000	94153000	36300000	15301000	20999000	32677000	16610000	16066000	71353000	37580000	33772000	54059000	30744000	23315000	52918	4899	49840	319746;319747;319748;319749;319750;319751;319752;319753	430540;430541;430542;430543;430544;430545;430546;430547;430548;430549	430544			10	
TYYMSGGLQPVPIVFR	0	Unmodified	1826.9389	0.93892665	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.47	3	6	4						3	4	4	5	3	93.306	91.448	2;3	7.1783E-182	43584	160513_QHF_FH_JSI11Kac_6	303.33	262.61			1.0084	1.0457	9.4843	15	2	Median	1.3577	1.1871	6.0776	4	0	Median	0.89822	1.0369	5.9497	4	1	Median	1.0118	0.97227	10.231	4	1	Median	0.90372	1.0193	10.827	3	0	Median	1113200000	564690000	548480000	160060000	73786000	86272000	292120000	159690000	132430000	412930000	203180000	209750000	248060000	128030000	120030000	52919	990	49841	319754;319755;319756;319757;319758;319759;319760;319761;319762;319763;319764;319765;319766;319767;319768;319769	430550;430551;430552;430553;430554;430555;430556;430557;430558;430559;430560;430561;430562;430563;430564;430565;430566;430567;430568;430569;430570;430571;430572;430573;430574	430559			24	
TYYMSGGLQPVPIVFR	0	Oxidation (M)	1842.9338	0.93384128	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.22		5							1	2	1	2	1	84.406	81.51	2	3.9359E-15	40766	160513_QHF_FH_JSI11Kac_6	182.08	157.74			1.0237	1.0226	18.276	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0198	1.1996	NaN	1	1	Median	1.0517	1.0226	3.69	2	2	Median	0.73227	0.77509	NaN	1	1	Median	57010000	26585000	30425000	0	0	0	16538000	6947700	9590600	26400000	10682000	15718000	14072000	8955900	5116500	52920	990	49841	319770;319771;319772;319773;319774;319775	430575;430576;430577;430578;430579;430580	430576		571	6	
TYYYNTETK	1	Unmodified	1181.5241	0.52406928	521	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.67	6.13	1						2					2	1	28.196	22.031	2	0.0095539	14074	160513_QHF_FH_JSI11Kac_4	58.676	48.895			1.3195	1.3012	2.8147	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3003	1.2943	0.75966	2	1	Median	1.1659	1.2338	NaN	1	0	Median	142680000	62312000	80365000	0	0	0	0	0	0	140280000	61369000	78916000	2392200	943600	1448600	52921	521	49842	319776;319777;319778	430581;430582;430583	430582			3	
VAAAESMPLLLECAR	0	Unmodified	1629.8218	0.82184798	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			77.919	77.756	2	3.6181E-21	70532	160511_QHF_FH_JSI10i_1	136.96	105.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52922	127	49843	319779	430584	430584			1	
VAAALENTHLLEVVNQCLSAR	0	Unmodified	2307.2005	0.20051408	5584	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		91.074	90.022	3	0.00041931	80216	160511_QHF_FH_JSI11i_3	49.973	31.915			0.94274	1.0968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94274	1.0968	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10369000	5179400	5190000	0	0	0	10369000	5179400	5190000	0	0	0	0	0	0	52923	5584	49844	319780;319781	430585;430586	430585			2	
VAAALPGMESTQDR	0	Unmodified	1444.698	0.69802768	1175	P20340	RAB6A	Ras-related protein Rab-6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		44.55	43.877	3	0.00041877	39619	160511_QHF_FH_JSI11i_1	60.401	50.867			0.96658	0.95005	5.8479	3	0	Median	1.1949	0.98616	NaN	1	0	Median	0.76346	0.87934	NaN	1	0	Median	0.96658	0.95005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	116140000	61099000	55037000	36051000	14442000	21609000	35713000	19928000	15785000	44372000	26729000	17643000	0	0	0	52924	1175	49845	319782;319783;319784	430587;430588;430589	430587			3	
VAAALPGMESTQDR	0	Oxidation (M)	1460.6929	0.6929423	1175	P20340	RAB6A	Ras-related protein Rab-6A	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				45.047	43.825	2	0.012852	38950	160511_QHF_FH_JSI9i_1	66.758	56.526			0.79283	0.65213	NaN	1	1	Median	0.79283	0.65213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46970000	23140000	23830000	46970000	23140000	23830000	0	0	0	0	0	0	0	0	0	52925	1175	49845	319785	430590	430590		798	1	
VAAALTAMDK	1	Unmodified	989.52157	0.52156686	1167	P19971	TYMP	Thymidine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.92	2	4				2				1	3	3	1	46.219	43.536	2	0.0021348	31383	160511_QHF_FH_JSI10i_1	61.691	33.517			0.9228	0.91991	52.827	8	3	Median	1.037	0.87522	NaN	1	1	Median	0.66607	0.77347	29.42	3	1	Median	1.059	1.1071	36.597	3	1	Median	0.29532	0.31524	NaN	1	0	Median	343780000	169630000	174150000	50449000	21745000	28703000	111320000	63268000	48048000	141100000	59548000	81553000	40909000	25067000	15842000	52926	1167	49846	319786;319787;319788;319789;319790;319791;319792;319793	430591;430592;430593;430594;430595;430596;430597	430593			7	
VAAAMENPNLR	0	Unmodified	1184.5972	0.59719142	4738	Q9H5X1	FAM96A	MIP18 family protein FAM96A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		30.06	29.686	2	0.0039946	25096	160511_QHF_FH_JSI11i_2	66.435	50.793			0.45473	0.44713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45473	0.44713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64451000	46225000	18226000	0	0	0	0	0	0	64451000	46225000	18226000	0	0	0	52927	4738	49847	319794	430598	430598			1	
VAAAMPVR	0	Unmodified	813.45309	0.45309337	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				24.444	23.442	2	0.061625	20090	160511_QHF_FH_JSI9i_2	34.717	21.509			1.0677	0.91031	NaN	1	0	Median	1.0677	0.91031	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66522000	30467000	36055000	66522000	30467000	36055000	0	0	0	0	0	0	0	0	0	52928	2443	49848	319795	430599	430599			1	
VAAAPASGALR	0	Unmodified	982.55598	0.55597854	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.3059	5.3059	3	0.052177	3033	160511_QHF_FH_JSI11i_3	13.008	0			1.1173	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1173	1.0684	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	245530000	117240000	128290000	0	0	0	0	0	0	245530000	117240000	128290000	0	0	0	52929	851	49849	319796	430600	430600			1	
VAAAVDLIIK	1	Unmodified	1011.6328	0.63283187	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	67.927	67.124	2	6.9071E-06	57821	160511_QHF_FH_JSI12i_2	107.57	75.64			0.80049	0.82963	7.2693	5	0	Median	0.95203	0.82442	NaN	1	0	Median	0.79879	0.968	NaN	1	0	Median	0.85405	0.83076	4.2891	2	0	Median	0.74217	0.82963	NaN	1	0	Median	610870000	313120000	297750000	106520000	45410000	61112000	158930000	96561000	62371000	179660000	83767000	95891000	165750000	87381000	78371000	52930	1650	49850	319797;319798;319799;319800;319801	430601;430602;430603;430604;430605	430601			5	
VAAAVPVIISR	0	Unmodified	1094.6812	0.68117905	2582	Q14919	DRAP1	Dr1-associated corepressor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							1	2	2	3	58.657	57.978	2	0.00032307	50988	160511_QHF_FH_JSI9i_2	75.378	53.292			0.90076	0.97361	19.962	8	0	Median	1.134	0.99843	NaN	1	0	Median	0.75969	0.91514	5.1974	2	0	Median	0.99534	0.97138	20.985	2	0	Median	0.97428	1.0125	31.905	3	0	Median	792450000	430120000	362340000	128150000	62655000	65497000	183410000	102910000	80494000	265490000	144140000	121350000	215400000	120410000	94992000	52931	2582	49851	319802;319803;319804;319805;319806;319807;319808;319809	430606;430607;430608;430609;430610	430607			5	
VAAAVVR	0	Unmodified	684.42826	0.42825883	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		16.939	9.3189	2	0.01457	7290	160513_QHF_FH_JSI11Kac_4	84.29	12.33			0.30691	0.30516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30691	0.30516	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73481000	56904000	16577000	0	0	0	0	0	0	73481000	56904000	16577000	0	0	0	52932	1263	49852	319810	430611	430611			1	
VAACELLHSMVMFMLGK	1	Unmodified	1935.9443	0.94428808	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.33			3						11	3	3	4	4	99.959	93.335	2;3	1.7677E-189	51565	160513_QHF_FH_JSI9Kac_6	304.62	264.51			1.1279	1.0547	23.21	13	5	Median	1.2352	1.0477	4.9776	3	2	Plateau	0.84948	1.0096	22.443	3	0	Plateau	0.88192	0.83424	12.504	4	2	Linear	1.2167	1.2856	27.151	3	1	Median	10720000000	5570100000	5149700000	2720700000	1266600000	1454100000	2561300000	1354700000	1206600000	4874000000	2684500000	2189600000	563810000	264330000	299480000	52933	2094	49853	319811;319812;319813;319814;319815;319816;319817;319818;319819;319820;319821;319822;319823;319824	430612;430613;430614;430615;430616;430617;430618;430619;430620;430621;430622;430623;430624;430625;430626;430627;430628	430616			17	
VAACELLHSMVMFMLGK	1	Oxidation (M)	1951.9392	0.9392027	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	97.846	89.041	3	6.006E-56	48484	160513_QHF_FH_JSI12Kac_6	190.11	170.82			1.1637	1.0585	28.034	7	0	Median	1.2023	1.0238	4.7144	2	0	Median	1.0499	1.2342	NaN	1	0	Median	0.81357	0.7731	3.0646	2	0	Median	1.4332	1.506	1.7783	2	0	Median	1319000000	627270000	691680000	190270000	79424000	110840000	199290000	100710000	98586000	481620000	269450000	212170000	447770000	177690000	270080000	52934	2094	49853	319825;319826;319827;319828;319829;319830;319831	430629;430630;430631;430632;430633;430634;430635	430633		1777	7	
VAADGESREESLIQESASK	1	Unmodified	2004.96	0.95999226	3715	Q8TD16	BICD2	Protein bicaudal D homolog 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	38.536	38.22	3	0.029437	32666	160511_QHF_FH_JSI11i_2	29.636	19.714			0.6782	0.69654	40.634	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88961	0.92839	NaN	1	0	Median	0.51703	0.52259	NaN	1	1	Median	94177000	69417000	24760000	0	0	0	0	0	0	37169000	22265000	14904000	57008000	47152000	9856100	52935	3715	49854	319832;319833	430636;430637;430638	430637			3	
VAAENALSVAEEQIR	0	Unmodified	1598.8264	0.82639932	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		67.612	67.037	2	9.0833E-05	60716	160511_QHF_FH_JSI10i_1	108.59	94.176			0.85112	0.72861	23.499	3	2	Median	0.89459	0.72861	NaN	1	1	Median	0.85112	0.95926	NaN	1	0	Median	0.62896	0.60101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86749000	45839000	40910000	14215000	6503800	7710900	32496000	15970000	16526000	40038000	23365000	16673000	0	0	0	52936	2574	49855	319834;319835;319836	430639;430640;430641	430640			3	
VAAETQSPSLFGSTK	1	Unmodified	1521.7675	0.76748745	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	1	2	2	46.397	45.725	2;3	2.405E-07	39295	160511_QHF_FH_JSI11i_2	88.441	73.751			0.90555	0.9547	24.083	5	2	Median	0.84711	0.72438	NaN	1	0	Median	1.1419	1.327	NaN	1	1	Median	1.2607	1.2294	NaN	1	0	Median	0.90169	0.94716	1.1226	2	1	Median	320980000	162670000	158300000	32049000	18812000	13237000	49464000	23749000	25716000	53328000	28165000	25163000	186140000	91947000	94189000	52937	5382	49856	319837;319838;319839;319840;319841;319842;319843	430642;430643;430644;430645;430646;430647;430648;430649;430650	430650			9	
VAAGAQIHQSLLCDNAEVK	1	Unmodified	2023.0157	0.015673424	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	46.752	46.631	3	3.1178E-05	41169	160511_QHF_FH_JSI11i_3	87.676	77.618			1.1123	1.0841	35.022	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92442	0.84631	NaN	1	1	Median	1.3384	1.3888	NaN	1	1	Median	85919000	39520000	46399000	0	0	0	0	0	0	47157000	24340000	22817000	38762000	15180000	23582000	52938	2358	49857	319844;319845;319846	430651;430652;430653	430651			3	
VAAGLQIK	1	Unmodified	798.49634	0.49633839	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	29.714	28.958	2	0.021617	25191	160511_QHF_FH_JSI10i_2	44.721	11.792			0.82172	0.85879	21.132	8	0	Median	1.0138	0.84706	6.1628	2	0	Median	0.71782	0.86635	5.4568	2	0	Median	0.79348	0.80031	3.4699	2	0	Median	1.0764	1.1622	36.989	2	0	Median	2269300000	1113000000	1156400000	378760000	160040000	218720000	580940000	297060000	283880000	771200000	406590000	364610000	538440000	249290000	289150000	52939	2585	49858	319847;319848;319849;319850;319851;319852;319853;319854	430654;430655;430656;430657;430658;430659	430658			6	
VAAGTLDASTK	1	Unmodified	1032.5451	0.54513908	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	19.212	18.818	2	0.00062922	16043	160511_QHF_FH_JSI10i_1	83.499	70.972			1.2326	1.2906	63.781	6	5	Median	1.7232	1.4087	NaN	1	1	Median	0.75946	0.88269	77.26	2	2	Median	0.74711	0.72787	104.02	2	2	Median	1.1541	1.1823	NaN	1	0	Median	882170000	433100000	449070000	129200000	48079000	81125000	291820000	156710000	135110000	287290000	154440000	132850000	173850000	73864000	99986000	52940	2594	49859	319855;319856;319857;319858;319859;319860	430660;430661;430662;430663;430664;430665;430666	430664			7	
VAAGVLCELAQDK	1	Unmodified	1372.7021	0.70205043	1065;1422	P14923;P35222	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	63.743	63.262	2	8.103E-05	54632	160511_QHF_FH_JSI12i_3	113.63	96.958			0.96032	0.95963	26.524	6	3	Median	0.93107	0.81641	NaN	1	1	Median	0.97611	1.1563	NaN	1	0	Median	0.90088	0.89018	0.34496	2	0	Median	1.3165	1.3192	34.725	2	2	Median	320920000	162810000	158110000	17731000	9397900	8332700	50105000	22422000	27683000	135150000	75326000	59825000	117930000	55664000	62269000	52941	1065;1422	49860	319861;319862;319863;319864;319865;319866	430667;430668;430669;430670;430671;430672	430672			6	
VAAHPILR	0	Unmodified	875.53412	0.53412088	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		15.949	15.302	2;3	0.0016898	12191	160511_QHF_FH_JSI9i_3	52.403	35.439			0.98195	0.79962	29.084	5	1	Median	1.0008	0.80751	1.3888	2	0	Median	0.56922	0.66253	NaN	1	1	Median	0.94901	0.89288	52.803	2	0	Median	NaN	NaN	NaN	0	0	Median	487380000	265210000	222170000	264270000	130390000	133870000	121040000	81736000	39304000	102070000	53078000	48995000	0	0	0	52942	5437	49861	319867;319868;319869;319870;319871	430673;430674;430675;430676;430677;430678	430675			6	
VAAIDNGLAFPLK	1	Unmodified	1327.75	0.7499869	4422	Q9BTU6	PI4K2A	Phosphatidylinositol 4-kinase type 2-alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		78.13	77.497	2	0.00224	68053	160511_QHF_FH_JSI11i_2	68.657	56.809			0.61119	0.639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61119	0.639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37411000	24895000	12516000	0	0	0	0	0	0	37411000	24895000	12516000	0	0	0	52943	4422	49862	319872	430679	430679			1	
VAAIEALNDGELQK	1	Unmodified	1469.7726	0.77257283	1707	P50502;Q8IZP2	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.91	8	5	2			4	6			5	8	3	9	61.586	57.534	2;3	1.2361E-29	51617	160511_QHF_FH_JSI10i_1	183.99	168.36			0.93745	0.91627	38.517	23	7	Median	1.0881	0.91596	40.362	5	0	Median	0.7697	0.91107	24.296	7	2	Median	0.93844	0.90347	3.1832	3	0	Plateau	0.95768	1.0145	53.027	8	5	Median	6883000000	3529100000	3354000000	1792600000	838350000	954250000	1843900000	1071400000	772490000	1656500000	857160000	799330000	1590100000	762190000	827890000	52944	1707	49863	319873;319874;319875;319876;319877;319878;319879;319880;319881;319882;319883;319884;319885;319886;319887;319888;319889;319890;319891;319892;319893;319894;319895;319896;319897	430680;430681;430682;430683;430684;430685;430686;430687;430688;430689;430690;430691;430692;430693;430694;430695;430696;430697;430698;430699;430700;430701;430702;430703;430704;430705;430706;430707;430708;430709;430710;430711;430712;430713;430714;430715;430716;430717;430718;430719;430720;430721;430722;430723;430724;430725;430726	430703			47	
VAAIEATGAVIHFGNGK	1	Unmodified	1653.8839	0.88385462	3382	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				70.747	62.125	3	0.030722	33060	160513_QHF_FH_JSI9Kac_6	34.395	17.113			0.60829	0.51844	NaN	1	1	Median	0.60829	0.51844	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18774000	10310000	8464100	18774000	10310000	8464100	0	0	0	0	0	0	0	0	0	52945	3382	49864	319898	430727	430727			1	
VAAIQQILGK	1	Unmodified	1039.639	0.63897988	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	61.678	60.919	2	0.00013468	52497	160511_QHF_FH_JSI12i_3	96.253	72.232			0.96888	1.0184	24.806	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0434	1.2137	NaN	1	0	Median	0.89966	0.85459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187600000	96203000	91401000	0	0	0	57873000	36312000	21561000	129730000	59890000	69841000	0	0	0	52946	3117	49865	319899;319900;319901	430728;430729	430729			2	
VAAIVVK	1	Unmodified	698.46906	0.46906101	5268	Q9UDY2	TJP2	Tight junction protein ZO-2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		28.013	20.004	2	0.049671	12562	160513_QHF_FH_JSI11Kac_4	52.231	5.88			0.22981	0.22836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22981	0.22836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28961000	23887000	5074000	0	0	0	0	0	0	28961000	23887000	5074000	0	0	0	52947	5268	49866	319902	430730	430730			1	
VAALAEGEPEGPWMDVGQGPGLER	0	Unmodified	2464.1693	0.16927353	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	2	3	85.474	84.993	2;3	1.457E-15	77263	160511_QHF_FH_JSI10i_1	142.1	129.72			1.0855	1.0346	12.57	8	1	Median	1.0998	0.91851	NaN	1	0	Median	0.78863	0.91248	11.558	2	0	Median	1.0855	1.0516	1.3015	2	0	Median	1.1027	1.0947	11.687	3	1	Median	590510000	310440000	280070000	78191000	38872000	39318000	134340000	81392000	52949000	169360000	84836000	84528000	208620000	105340000	103280000	52948	950	49867	319903;319904;319905;319906;319907;319908;319909;319910	430731;430732;430733;430734;430735;430736;430737;430738;430739;430740;430741;430742;430743	430741			12	
VAALAEGEPEGPWMDVGQGPGLERK	1	Unmodified	2592.2642	0.26423655	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		75.999	75.999	3	5.5262E-10	67752	160511_QHF_FH_JSI11i_3	100.64	88.084			0.38552	0.36022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38552	0.36022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96664000	75826000	20838000	0	0	0	0	0	0	96664000	75826000	20838000	0	0	0	52949	950	49868	319911	430744	430744			1	
VAALQNLVK	1	Unmodified	954.58622	0.58621603	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.38	3	4	4				1			3	3	3	3	50.524	48.853	2	8.7768E-06	42065	160511_QHF_FH_JSI12i_2	129.4	87.288			1.0579	1.1034	17.66	12	9	Median	1.0637	0.88499	4.374	3	3	Median	1.0522	1.2832	16.677	3	3	Median	1.0639	1.0863	9.3867	3	2	Median	1.134	1.21	9.3278	3	1	Plateau	4413900000	2189000000	2224900000	781240000	393370000	387870000	931790000	493170000	438620000	1614000000	749920000	864100000	1086900000	552550000	534330000	52950	2585	49869	319912;319913;319914;319915;319916;319917;319918;319919;319920;319921;319922;319923	430745;430746;430747;430748;430749;430750;430751;430752;430753;430754;430755;430756;430757;430758	430747			14	
VAALTGLPFVTAPNK	1	Unmodified	1497.8555	0.8555146	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5.4	8	8	7					5	1	7	7	7	8	85.542	83.21	2;3	1.4251E-29	74967	160511_QHF_FH_JSI11i_2	227.37	202.52			0.98402	1.033	21.414	28	1	Median	1.2946	1.0662	7.2994	7	1	Median	0.85498	1.0493	7.3154	7	0	Median	1.0054	1.0075	9.7194	7	0	Median	0.94873	1.0234	40.453	7	0	Median	5507700000	2742100000	2765600000	853210000	379950000	473260000	1362700000	750700000	612000000	1874400000	912040000	962330000	1417500000	699420000	718030000	52951	887	49870	319924;319925;319926;319927;319928;319929;319930;319931;319932;319933;319934;319935;319936;319937;319938;319939;319940;319941;319942;319943;319944;319945;319946;319947;319948;319949;319950;319951;319952	430759;430760;430761;430762;430763;430764;430765;430766;430767;430768;430769;430770;430771;430772;430773;430774;430775;430776;430777;430778;430779;430780;430781;430782;430783;430784;430785;430786;430787;430788;430789;430790;430791;430792;430793;430794;430795;430796;430797;430798;430799;430800;430801;430802;430803;430804;430805;430806;430807;430808;430809;430810;430811;430812;430813;430814;430815;430816;430817;430818;430819	430807			61	
VAAMSVAQR	0	Unmodified	931.49094	0.49093544	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		19.764	19.106	2	0.018902	15600	160511_QHF_FH_JSI11i_2	42.599	9.7581			0.68969	0.96189	25.811	3	0	Plateau	0.68969	0.57478	NaN	1	0	Median	0.58214	0.72033	NaN	1	0	Median	0.96923	0.96189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	217770000	119080000	98692000	63537000	30811000	32726000	66843000	40374000	26470000	87390000	47893000	39496000	0	0	0	52952	300	49871	319953;319954;319955	430820	430820			1	
VAANAPK	1	Unmodified	669.38097	0.38097428	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	6.2952	6.0635	2	0.016664	4088	160511_QHF_FH_JSI12i_1	62.715	44.867			0.62614	8.8257	297.73	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57746	0.69188	NaN	1	1	Median	0.62614	0.60921	NaN	1	1	Median	105.9	112.58	NaN	1	0	Median	7009300000	3923800000	3085500000	0	0	0	3190100000	2149300000	1040700000	2689600000	1758100000	931530000	1129600000	16368000	1113300000	52953	2155	49872	319956;319957;319958;319959	430821;430822;430823;430824	430822			4	
VAANAVDPK	1	Unmodified	883.47633	0.47633123	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		13.919	13.473	2	0.0023089	10756	160511_QHF_FH_JSI9i_1	65.252	35.067			0.85583	0.97467	24.415	3	0	Plateau	1.9093	1.5706	NaN	1	0	Median	0.83503	0.97467	NaN	1	0	Median	1.1846	1.1307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	454200000	205110000	249090000	139560000	35116000	104450000	161330000	94737000	66596000	153310000	75258000	78051000	0	0	0	52954	2690	49873	319960;319961;319962	430825;430826	430826			2	
VAAPDVVVPTLDTVR	0	Unmodified	1550.8668	0.86680757	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	77.436	76.958	2;3	2.5935E-05	70165	160511_QHF_FH_JSI12i_1	82.908	71.294			0.9004	0.8938	13.967	8	1	Median	1.1647	0.96813	13.608	2	0	Median	0.6973	0.81175	28.429	2	1	Median	0.90811	0.88391	3.8831	2	0	Median	0.8576	0.89179	6.7703	2	0	Median	939010000	496290000	442720000	212860000	101570000	111290000	231290000	141010000	90283000	291950000	154630000	137320000	202910000	99084000	103820000	52955	2517	49874	319963;319964;319965;319966;319967;319968;319969;319970	430827;430828;430829;430830;430831;430832;430833;430834;430835;430836;430837;430838;430839	430831			13	
VAAPEIVSGVSGESEQK	1	Unmodified	1685.8472	0.84719434	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	51.008	50.379	2;3	2.2172E-06	45522	160511_QHF_FH_JSI11i_1	119.87	105.19			0.8425	0.93012	35.542	6	2	Median	0.55151	0.44665	NaN	1	0	Median	0.8219	0.96805	NaN	1	1	Median	0.89989	0.86396	40.023	2	0	Median	0.94588	0.96947	11.515	2	1	Median	429160000	213790000	215370000	50235000	27030000	23205000	42748000	23056000	19692000	164110000	77946000	86159000	172070000	85760000	86312000	52956	285	49875	319971;319972;319973;319974;319975;319976	430840;430841;430842;430843;430844;430845;430846;430847	430841			7	
VAAQCSHAAVSAYK	1	Unmodified	1461.7034	0.70344741	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.9		6	5					1	3	3	4	5	3	18.073	15.534	2;3	3.3264E-21	12221	160511_QHF_FH_JSI12i_3	170.18	146.86			0.95993	0.95214	29.426	14	3	Median	1.1769	0.97489	33.432	3	2	Median	0.82836	0.99571	37.637	4	1	Median	0.82462	0.78872	12.823	4	0	Median	1.3886	1.3763	23.574	3	0	Plateau	1102200000	518340000	583860000	56797000	26036000	30760000	125520000	71573000	53945000	448140000	245710000	202430000	471750000	175030000	296720000	52957	5593	49876	319977;319978;319979;319980;319981;319982;319983;319984;319985;319986;319987;319988;319989;319990;319991	430848;430849;430850;430851;430852;430853;430854;430855;430856;430857;430858;430859;430860;430861;430862;430863;430864;430865;430866;430867;430868;430869;430870;430871;430872;430873;430874	430871			27	
VAASCGAIQYIPTELDQVRK	1	Unmodified	2218.1416	0.14160222	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	2	2	72.266	71.574	3	2.1969E-10	63459	160511_QHF_FH_JSI10i_2	119.38	109.1			0.13381	0.13531	74.297	6	6	Median	0.12364	0.10252	NaN	1	1	Median	0.14482	0.17827	NaN	1	1	Median	0.26097	0.26156	132.2	2	2	Median	0.1277	0.13605	53.3	2	2	Median	4103200000	3644900000	458290000	634020000	581140000	52882000	891250000	797400000	93850000	1079100000	980210000	98849000	1498900000	1286200000	212710000	52958	3222	49877	319992;319993;319994;319995;319996;319997	430875;430876;430877;430878;430879;430880	430879			6	
VAASIGNAQK	1	Unmodified	957.52434	0.52434406	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.63	4	3	1			2	2			3	2	3	4	15.98	13.098	2	2.085E-07	10791	160511_QHF_FH_JSI9i_1	116.73	65.76			0.97544	1.0278	29.278	12	1	Median	1.1814	0.96124	31.592	3	0	Median	0.80503	0.96625	8.3956	2	0	Median	1.0564	1.0303	44.259	3	1	Plateau	0.93041	1.0186	11.45	4	0	Median	3272800000	1616700000	1656100000	771170000	316190000	454980000	803090000	488350000	314730000	816000000	373200000	442800000	882530000	438950000	443590000	52959	98	49878	319998;319999;320000;320001;320002;320003;320004;320005;320006;320007;320008;320009	430881;430882;430883;430884;430885;430886;430887;430888;430889;430890;430891;430892;430893;430894;430895;430896;430897	430893			17	
VAASNIVQMK	1	Unmodified	1059.5747	0.57466507	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.52	4	4	1				2	1		3	3	3	3	40.503	37.382	2	7.02E-06	22139	160513_QHF_FH_JSI11Kac_4	111.46	68.586			0.7796	0.84796	26.405	12	1	Median	0.7815	0.64597	28.045	3	0	Median	0.77553	0.92386	13.01	3	1	Plateau	0.84567	0.8472	13.056	3	0	Plateau	0.69359	0.77205	40.005	3	0	Plateau	6420000000	3430000000	2990000000	1038500000	543480000	494980000	1731600000	970890000	760720000	2227700000	1178800000	1048900000	1422200000	736840000	685340000	52960	1673	49879	320010;320011;320012;320013;320014;320015;320016;320017;320018;320019;320020;320021	430898;430899;430900;430901;430902;430903;430904;430905;430906;430907;430908;430909;430910;430911;430912;430913;430914;430915	430906			18	
VAASNIVQMK	1	Oxidation (M)	1075.5696	0.56957969	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				38.59	37.374	2	0.017232	32967	160511_QHF_FH_JSI9i_1	46.447	23.922			1.6907	1.3852	NaN	1	0	Median	1.6907	1.3852	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61855000	28999000	32856000	61855000	28999000	32856000	0	0	0	0	0	0	0	0	0	52961	1673	49879	320022	430916	430916		1361	1	
VAASPEDIK	1	Unmodified	928.48656	0.48656157	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.8	5.88	3					2				1	2	2		24.562	20.917	2	0.00076831	18139	160511_QHF_FH_JSI11i_1	74.486	52.715			0.96542	1.0154	6.9791	5	0	Median	1.2891	1.0422	NaN	1	0	Median	0.8483	0.99259	3.2138	2	0	Median	1.0605	1.053	12.109	2	0	Median	NaN	NaN	NaN	0	0	Median	686930000	323040000	363890000	231620000	103650000	127980000	208990000	110750000	98234000	246320000	108640000	137680000	0	0	0	52962	3844	49880	320023;320024;320025;320026;320027	430917;430918;430919;430920	430917			4	
VAASTLLSLHK	1	Unmodified	1138.671	0.67100829	5421	Q9UM82	SPATA2	Spermatogenesis-associated protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				50.627	49.03	3	0.060451	40193	160511_QHF_FH_JSI9i_3	21.631	14.503			2.071	1.7504	NaN	1	1	Median	2.071	1.7504	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10542000	4298000	6244000	10542000	4298000	6244000	0	0	0	0	0	0	0	0	0	52963	5421	49881	320028	430921	430921			1	
VAASVLNPYVK	1	Unmodified	1159.6601	0.66010926	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.93	4	4	3				2	3		2	5	5	4	55.65	51.748	2	3.3408E-13	46518	160511_QHF_FH_JSI10i_1	149.72	134.57			1.0064	1.083	10.405	16	0	Median	1.1594	0.95285	8.3259	2	0	Median	0.9151	1.1203	7.3569	5	0	Median	1.0458	0.88539	13.933	5	0	Linear	1.031	1.1263	5.7607	4	0	Median	5672500000	2915600000	2756900000	907460000	418310000	489140000	1418100000	774820000	643290000	2145900000	1063500000	1082400000	1201000000	658950000	542060000	52964	1612	49882	320029;320030;320031;320032;320033;320034;320035;320036;320037;320038;320039;320040;320041;320042;320043;320044	430922;430923;430924;430925;430926;430927;430928;430929;430930;430931;430932;430933;430934;430935;430936;430937;430938;430939;430940;430941;430942;430943;430944	430931			23	
VAAVGAR	0	Unmodified	642.38131	0.38130863	830	P05166	PCCB	Propionyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	8.2563	7.9214	2	0.041113	5332	160511_QHF_FH_JSI12i_3	49.312	0			0.78284	0.88268	20.562	5	1	Median	1.2794	1.067	NaN	1	0	Median	0.71912	0.88268	NaN	1	0	Median	0.95123	0.99091	NaN	1	0	Median	0.66227	0.71513	18.399	2	1	Median	4917800000	2675400000	2242500000	709390000	306450000	402940000	991350000	598240000	393110000	757690000	407480000	350210000	2459400000	1363200000	1096200000	52965	830	49883	320045;320046;320047;320048;320049	430945;430946	430946			2	
VAAVGGQSYLSSILR	0	Unmodified	1519.8358	0.83584179	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	79.302	78.311	2	0.0026895	65623	160511_QHF_FH_JSI10i_3	56.094	40.829			1.4097	1.1906	6.8887	3	0	Plateau	1.4996	1.207	NaN	1	0	Median	0.90263	1.0531	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0643	1.1086	NaN	1	0	Median	65189000	37798000	27392000	24934000	12743000	12191000	18144000	11590000	6554200	0	0	0	22111000	13465000	8646400	52966	3163	49884	320050;320051;320052	430947;430948;430949	430947			3	
VACETVAK	1	Unmodified	876.4375	0.43750288	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.3522	9.173	2	0.011895	6920	160511_QHF_FH_JSI10i_1	53.754	38.972			0.96861	1.0349	8.712	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83116	0.97312	NaN	1	0	Median	1.1288	1.1007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	453790000	225070000	228720000	0	0	0	195090000	106710000	88384000	258700000	118360000	140340000	0	0	0	52967	1370	49885	320053;320054	430950;430951;430952;430953	430952			4	
VACIGAWHPAR	0	Unmodified	1236.6186	0.61859557	1484	P39023;Q92901	RPL3;RPL3L	60S ribosomal protein L3;60S ribosomal protein L3-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.4	6.43			3						4	1	4	1	1	38.98	34.043	2;3	0.0001541	18970	160513_QHF_FH_JSI10Kac_6	70.977	61.545			1.0381	1.0842	29.15	6	2	Median	1.1964	0.95832	NaN	1	0	Median	1.0551	1.2285	16.215	3	1	Plateau	0.98327	0.92242	NaN	1	1	Median	1.8128	1.9676	NaN	1	0	Median	472650000	211990000	260670000	126280000	60103000	66172000	229870000	103610000	126260000	105210000	43733000	61475000	11296000	4541700	6754400	52968	1484	49886	320055;320056;320057;320058;320059;320060;320061	430954;430955;430956;430957;430958;430959;430960;430961	430958			8	
VACITEQVLTLVNK	1	Unmodified	1586.8702	0.87017839	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	91.39	91.115	2;3	3.5124E-06	79082	160511_QHF_FH_JSI12i_3	124.12	108.86			0.7225	0.70588	80.386	8	6	Median	0.77099	0.66841	NaN	1	1	Median	0.65661	0.79412	NaN	1	1	Median	0.27049	0.25858	113.45	3	3	Plateau	1.007	1.096	62.002	3	1	Median	934540000	717720000	216810000	34008000	20254000	13754000	65291000	43401000	21891000	563650000	474930000	88722000	271580000	179140000	92446000	52969	816	49887	320062;320063;320064;320065;320066;320067;320068;320069	430962;430963;430964;430965;430966;430967;430968;430969;430970	430970			9	
VADADPASAPSQGALQGR	0	Unmodified	1709.8333	0.83327561	952	P0DI83	RAB34	Ras-related protein Rab-34, isoform NARR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.491	31.887	2	1.711E-22	28416	160511_QHF_FH_JSI10i_1	169.62	140.08			1.1066	1.0378	22.253	4	0	Median	1.0697	0.91586	NaN	1	0	Median	0.76427	0.89486	NaN	1	0	Median	1.4627	1.43	NaN	1	0	Median	1.1447	1.176	NaN	1	0	Median	155590000	71037000	84556000	36939000	16631000	20308000	42202000	22215000	19987000	42162000	16039000	26123000	34289000	16150000	18139000	52970	952	49888	320070;320071;320072;320073	430971;430972;430973;430974;430975;430976;430977;430978	430975			8	
VADEMDVMLGQEVGYSIR	0	Unmodified	2010.9391	0.93906259	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			86.773	86.643	2	0.00013827	78676	160511_QHF_FH_JSI10i_1	73.156	60.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52971	300	49889	320074	430979	430979			1	
VADFTEQYNEQYGAVR	0	Unmodified	1888.8592	0.85915601	4343	Q9BQ04	RBM4B	RNA-binding protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	52.947	52.409	2	3.2691E-07	47502	160511_QHF_FH_JSI11i_1	93.011	78.331			1.0515	1.005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0515	1.005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29357000	12713000	16644000	0	0	0	0	0	0	21470000	12713000	8757500	7886900	0	7886900	52972	4343	49890	320075;320076;320077;320078;320079;320080	430980;430981;430982;430983;430984;430985	430981			6	
VADGGGAGGTFQPYLDTLR	0	Unmodified	1893.9221	0.92209062	5669	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	73.694	73.158	2;3	2.2248E-24	66626	160511_QHF_FH_JSI11i_1	176.4	164.78			1.3524	1.1737	36.029	4	1	Median	1.5397	1.2354	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6862	1.6002	51.082	2	1	Median	1.021	1.0508	NaN	1	0	Median	187080000	67627000	119460000	39691000	10989000	28702000	0	0	0	95474000	36739000	58734000	51918000	19899000	32019000	52973	5669	49891	320081;320082;320083;320084	430986;430987;430988;430989	430986			2	
VADGLPLAASMQEDEQSGR	0	Unmodified	1972.916	0.91601896	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.269	60.629	2;3	1.094E-82	54985	160511_QHF_FH_JSI11i_1	250.52	238.02			0.91748	1.0039	5.7043	8	0	Median	1.2875	1.041	2.7359	2	0	Median	0.87898	1.033	1.7085	2	0	Median	0.96915	0.94739	5.8562	2	0	Median	0.88613	0.94368	3.4284	2	0	Median	1983200000	986160000	997090000	436790000	178770000	258020000	470530000	233500000	237030000	604260000	311970000	292280000	471670000	261920000	209750000	52974	520	49892	320085;320086;320087;320088;320089;320090;320091;320092	430990;430991;430992;430993;430994;430995;430996;430997;430998;430999;431000;431001;431002;431003;431004;431005	430991			16	
VADGLPLAASMQEDEQSGR	0	Oxidation (M)	1988.9109	0.91093358	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	1	0			By MS/MS		1	0	1											1		46.988	46.578	2	0.001889	42141	160511_QHF_FH_JSI11i_1	59.185	46.417			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52975	520	49892	320093	431006	431006		194	1	
VADGLPLAASMQEDEQSGRDLQQYQSQAK	1	Unmodified	3162.4888	0.48876977	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	8	8	4							4	4	6	6	67.947	67.323	3;4	1.2431E-43	61443	160511_QHF_FH_JSI12i_1	179.47	162.11			1.086	1.1456	16.747	20	2	Median	1.4524	1.2114	17.428	4	0	Median	0.97306	1.1456	3.7528	4	0	Median	1.1843	1.1586	24.451	6	1	Median	1.2053	1.2585	15.766	6	1	Plateau	2373100000	1123900000	1249200000	365860000	134790000	231070000	680060000	372880000	307180000	602920000	265390000	337540000	724240000	350810000	373430000	52976	520	49893	320094;320095;320096;320097;320098;320099;320100;320101;320102;320103;320104;320105;320106;320107;320108;320109;320110;320111;320112;320113	431007;431008;431009;431010;431011;431012;431013;431014;431015;431016;431017;431018;431019;431020;431021;431022;431023;431024;431025;431026;431027;431028;431029;431030;431031;431032;431033;431034;431035;431036;431037;431038;431039;431040;431041;431042;431043;431044;431045;431046;431047;431048;431049;431050;431051;431052	431022			46	
VADHSGQVK	1	Unmodified	939.47739	0.47739386	3268	Q7Z4G1	COMMD6	COMM domain-containing protein 6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		4.6714	4.4773	3	0.0038537	2195	160511_QHF_FH_JSI11i_2	52.49	33.759			0.90721	0.92691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90721	0.92691	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	188820000	97408000	91413000	0	0	0	0	0	0	188820000	97408000	91413000	0	0	0	52977	3268	49894	320114	431053	431053			1	
VADIGLAAWGR	0	Unmodified	1127.6087	0.60874239	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.87		7	3					3	1	3	3	3	5	68.173	64.532	2	2.6583E-06	56537	160511_QHF_FH_JSI11i_2	117.81	95.851			0.939	1.0096	7.6903	14	6	Median	1.1907	0.98594	7.629	3	2	Median	0.81824	0.98463	6.6872	3	0	Median	0.95629	0.96702	12.482	3	2	Plateau	0.93078	1.0319	7.21	5	2	Median	5052100000	2655700000	2396400000	871090000	437040000	434050000	786550000	437580000	348970000	1759800000	960720000	799120000	1634700000	820380000	814270000	52978	1234	49895	320115;320116;320117;320118;320119;320120;320121;320122;320123;320124;320125;320126;320127;320128	431054;431055;431056;431057;431058;431059;431060;431061;431062;431063;431064;431065;431066;431067	431061			14	
VADIGLAAWGRK	1	Unmodified	1255.7037	0.70370541	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		53.169	53.169	3	0.00010537	47089	160511_QHF_FH_JSI11i_3	73.951	61.145			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52979	1234	49896	320129	431068	431068			1	
VADILTQLLQTDDSAEFNLVNNALLSIFK	1	Unmodified	3204.6918	0.6918099	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.27	98.551	3	3.2483E-41	58336	160513_QHF_FH_JSI10Kac_6	156.27	143.64			0.72152	0.85026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72152	0.85026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132710000	67452000	65254000	0	0	0	132710000	67452000	65254000	0	0	0	0	0	0	52980	4575	49897	320130	431069	431069			1	
VADISGDTQK	1	Unmodified	1032.5088	0.50875357	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	3	2	15.03	12.063	2	7.0163E-08	10461	160511_QHF_FH_JSI10i_1	123.86	99.705			0.84201	0.93391	10.401	8	0	Median	1.434	1.1301	NaN	1	0	Median	0.79762	0.93391	1.0075	2	0	Median	0.88389	0.84452	9.471	3	0	Median	0.83088	0.89917	7.0898	2	0	Median	4609700000	2221700000	2388100000	1106900000	408930000	697960000	1202800000	640280000	562540000	1087300000	525110000	562160000	1212800000	647340000	565420000	52981	3213	49898	320131;320132;320133;320134;320135;320136;320137;320138	431070;431071;431072;431073;431074;431075;431076;431077;431078;431079	431075			9	
VADKIQLINNMLDK	2	Acetyl (K);Oxidation (M)	1671.8866	0.88655673	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		79.556	68.969	2	0.026129	36620	160513_QHF_FH_JSI11Kac_5	56.225	39.593			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52982	775	49899	320139	431080	431080	400	285	1	
VADLADFVK	1	Unmodified	976.52295	0.52294707	4314	Q99797	MIPEP	Mitochondrial intermediate peptidase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			86.816	86.685	2	0.045757	78714	160511_QHF_FH_JSI10i_1	45.081	10.257			0.15322	0.1719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15322	0.1719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32818000	27630000	5188800	0	0	0	32818000	27630000	5188800	0	0	0	0	0	0	52983	4314	49900	320140	431081	431081			1	
VADLLQHINLMK	1	Unmodified	1393.7752	0.77515579	2646	Q15262	PTPRK	Receptor-type tyrosine-protein phosphatase kappa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1								2	2	2	74.248	73.469	3	0.00012429	65281	160511_QHF_FH_JSI11i_3	69.815	55.024			1.4171	1.4779	41.342	6	4	Median	NaN	NaN	NaN	0	0	Median	0.92419	1.1258	64.031	2	2	Median	1.5323	1.4779	13.939	2	0	Median	1.0436	1.1536	57.832	2	2	Median	92788000	50703000	42084000	0	0	0	30200000	19381000	10819000	42885000	20240000	22646000	19703000	11082000	8620200	52984	2646	49901	320141;320142;320143;320144;320145;320146	431082;431083;431084;431085;431086;431087;431088	431082			7	
VADLTEQYNEQYGAVR	0	Unmodified	1854.8748	0.87480607	4498	Q9BWF3	RBM4	RNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	50.243	49.61	2;3	6.9363E-290	45106	160511_QHF_FH_JSI12i_1	366.93	350.79			1.0429	1.0367	7.4255	6	0	Median	1.2513	1.0002	NaN	1	0	Median	0.9403	1.0945	10.029	2	0	Median	1.0818	1.0541	NaN	1	0	Median	1.0046	1.0378	10.701	2	0	Median	1170800000	538940000	631860000	250420000	100710000	149710000	347660000	181960000	165700000	260540000	115560000	144980000	312180000	140710000	171480000	52985	4498	49902	320147;320148;320149;320150;320151;320152	431089;431090;431091;431092;431093;431094;431095;431096;431097;431098;431099	431092			11	
VADLYELVQYAGNIIPR	0	Unmodified	1933.0309	0.030912783	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	102.47	102.36	3	2.5843E-05	90157	160511_QHF_FH_JSI11i_2	79.346	63.528			1.2046	1.2296	21.783	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74991	0.9008	NaN	1	0	Median	1.2046	1.2296	NaN	1	0	Median	1.228	1.3705	NaN	1	0	Median	488980000	238980000	250000000	0	0	0	91135000	60708000	30426000	277120000	132330000	144790000	120730000	45938000	74792000	52986	4212	49903	320153;320154;320155	431100;431101	431100			1	
VADMALHYANK	1	Unmodified	1231.6019	0.60194245	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.47	1	10	7					2	8	9	8	6	5	34.176	30.318	2;3	5.068E-13	25477	160511_QHF_FH_JSI11i_2	146.79	121.65			0.97887	1.0165	42.551	28	5	Median	1.1996	1.0147	54.751	9	4	Median	0.8078	0.95316	52.625	8	1	Median	1.1301	1.0772	10.461	6	0	Median	0.90558	0.9587	7.0423	5	0	Median	10918000000	5574000000	5343600000	2625500000	1265900000	1359600000	1985000000	1143600000	841420000	3850000000	1976400000	1873700000	2457000000	1188200000	1268900000	52987	1721	49904	320156;320157;320158;320159;320160;320161;320162;320163;320164;320165;320166;320167;320168;320169;320170;320171;320172;320173;320174;320175;320176;320177;320178;320179;320180;320181;320182;320183	431102;431103;431104;431105;431106;431107;431108;431109;431110;431111;431112;431113;431114;431115;431116;431117;431118;431119;431120;431121;431122;431123;431124;431125;431126;431127;431128;431129;431130;431131;431132;431133;431134;431135;431136;431137;431138;431139;431140;431141;431142;431143;431144;431145;431146;431147	431127			46	
VADMALHYANK	1	Oxidation (M)	1247.5969	0.59685707	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.73		12	3					3	2	5	4	7	4	26.006	22.936	2;3	3.2367E-05	25712	160511_QHF_FH_JSI11i_2	101.65	90.156			1.038	1.0329	79.559	17	8	Median	1.2446	1.0329	16.786	5	3	Median	0.79416	0.93126	107.13	3	1	Median	0.21998	0.22129	131.74	5	3	Linear	0.91855	1.0235	15.196	4	1	Median	1145600000	602600000	543020000	265340000	121410000	143930000	146520000	65266000	81251000	541880000	321420000	220460000	191880000	94506000	97374000	52988	1721	49904	320184;320185;320186;320187;320188;320189;320190;320191;320192;320193;320194;320195;320196;320197;320198;320199;320200;320201;320202;320203	431148;431149;431150;431151;431152;431153;431154;431155;431156;431157;431158;431159;431160;431161;431162;431163;431164;431165;431166	431161		1403	19	
VADMALHYANKYNIMLVR	1	Acetyl (K);Oxidation (M)	2179.0918	0.091815255	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		79.658	70.344	3	0.0042372	38517	160513_QHF_FH_JSI11Kac_6	54.764	41.034			0.20941	0.21023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20941	0.21023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36627000	31880000	4746700	0	0	0	0	0	0	36627000	31880000	4746700	0	0	0	52989	1721	49905	320204	431167	431167	1738	1403;1404	1	
VADNAQQQYVR	0	Unmodified	1290.6317	0.63166267	3720	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	16.389	16.156	2	4.3592E-05	13478	160511_QHF_FH_JSI11i_1	103.7	71.766			0.8015	0.78144	34.733	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81683	0.79459	2.3594	2	1	Median	0.40648	0.43569	NaN	1	1	Median	279400000	149910000	129490000	0	0	0	0	0	0	171910000	80277000	91633000	107490000	69633000	37854000	52990	3720	49906	320205;320206;320207	431168;431169;431170	431169			3	
VADNLAIQLAAVTEDK	1	Unmodified	1669.8887	0.88866522	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	83.662	83.188	2;3	1.9214E-05	75743	160511_QHF_FH_JSI11i_1	79.013	55.182			0.8225	0.87182	27.435	5	0	Median	1.7165	1.3998	NaN	1	0	Median	1.0667	1.2505	NaN	1	0	Median	0.82241	0.77173	NaN	1	0	Median	0.79156	0.83228	6.5641	2	0	Median	155830000	77867000	77961000	16191000	5172400	11019000	40765000	19084000	21681000	24173000	11842000	12331000	74699000	41769000	32930000	52991	2325	49907	320208;320209;320210;320211;320212;320213	431171;431172;431173;431174;431175	431171			4	
VADNSFDAK	1	Unmodified	965.44543	0.44542503	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	17.238	14.511	2	0.013583	12288	160511_QHF_FH_JSI10i_1	46.335	32.756			0.883	0.9182	9.0755	6	0	Median	1.1442	0.93174	NaN	1	0	Median	0.83983	0.99439	NaN	1	0	Median	1.0043	0.98203	12.898	2	0	Median	0.81201	0.86543	6.3002	2	0	Median	2944200000	1646100000	1298100000	668000000	305930000	362070000	761460000	420710000	340750000	733820000	442820000	290990000	780930000	476680000	304250000	52992	2586	49908	320214;320215;320216;320217;320218;320219	431176;431177;431178;431179	431177			4	
VADNSFDAKR	1	Acetyl (K)	1163.5571	0.55710075	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		31.552	22.832	2	0.038796	13905	160513_QHF_FH_JSI11Kac_3	60.398	40.611			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	52993	2586	49909	320220	431180	431180			1	
VADPDHDHTGFLTEYVATR	0	Unmodified	2142.997	0.99704647	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	56.711	56.545	3;4	5.1361E-06	48496	160511_QHF_FH_JSI12i_3	71.592	66.614			0.96815	0.99596	9.4271	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1791	1.0969	NaN	1	0	Median	0.93722	0.95118	6.5069	2	0	Median	246900000	128060000	118840000	0	0	0	0	0	0	103630000	54313000	49315000	143270000	73745000	69528000	52994	1309	49910	320221;320222;320223	431181;431182;431183	431182			2	
VADPPRDSK	1	Unmodified	983.50361	0.50360861	2705	Q15758	SLC1A5	Neutral amino acid transporter B(0)	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2	0		2									1		1	5.6962	5.1898	3	0.034966	3295	160511_QHF_FH_JSI10i_2	28.956	12.18			0.99454	1.1695	13.988	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86564	1.0594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1426	1.2911	NaN	1	0	Median	423530000	219570000	203960000	0	0	0	270040000	143230000	126810000	0	0	0	153490000	76345000	77147000	52995	2705	49911	320224;320225	431184;431185	431185			2	
VADPTPFHIQAEVTMK	1	Unmodified	1782.8975	0.89745577	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	66.459	65.627	2;3	1.019E-10	56842	160511_QHF_FH_JSI12i_3	111.34	93.427			1.0327	1.0401	13.66	9	0	Median	1.1328	0.97124	8.2457	2	0	Median	0.86003	1.0761	7.5574	2	0	Median	0.95931	0.99806	7.5226	2	0	Median	1.0329	1.1423	17.605	3	0	Median	1356500000	703660000	652820000	216950000	104760000	112190000	335270000	180990000	154280000	329420000	173570000	155850000	474840000	244340000	230500000	52996	1092	49912	320226;320227;320228;320229;320230;320231;320232;320233;320234	431186;431187;431188;431189;431190;431191;431192;431193;431194;431195;431196;431197;431198;431199;431200;431201;431202;431203	431202			18	
VADQDGDSMATR	0	Unmodified	1264.5354	0.53537903	4020	Q96D15	RCN3	Reticulocalbin-3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	11.111	10.727	2	0.0028001	8648	160511_QHF_FH_JSI12i_1	68.893	52.69			0.66078	0.70898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66078	0.70898	NaN	1	1	Median	43916000	25307000	18609000	0	0	0	0	0	0	0	0	0	43916000	25307000	18609000	52997	4020	49913	320235;320236	431204;431205	431204			2	
VADRLGLELGK	1	Unmodified	1169.6768	0.67682195	1008	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	44.18	43.42	2;3	0.00055493	38025	160511_QHF_FH_JSI11i_3	64.55	38.508			0.98657	0.99904	13.708	8	0	Median	0.98884	0.89393	NaN	1	0	Median	0.98431	1.1135	4.9157	3	0	Median	1.1432	1.1233	22.212	2	0	Median	0.8742	0.91384	3.7089	2	0	Median	936080000	485800000	450270000	47488000	20886000	26602000	230240000	130490000	99756000	351400000	172980000	178420000	306950000	161450000	145500000	52998	1008	49914	320237;320238;320239;320240;320241;320242;320243;320244	431206;431207;431208;431209;431210;431211;431212	431206			7	
VADWTGATYQDK	1	Unmodified	1353.6201	0.62009493	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.992	36.379	2	4.3667E-05	32300	160511_QHF_FH_JSI9i_1	101.3	74.781			0.94409	0.96633	10.516	4	0	Median	1.1526	0.95463	NaN	1	0	Median	0.82691	0.97818	NaN	1	0	Median	1.0779	1.0371	NaN	1	0	Median	0.76261	0.81126	NaN	1	0	Median	2978300000	1510100000	1468100000	506390000	243560000	262830000	833860000	391800000	442050000	943120000	500820000	442300000	694890000	373960000	320930000	52999	282	49915	320245;320246;320247;320248	431213;431214;431215;431216;431217;431218;431219;431220;431221;431222;431223;431224;431225;431226	431225			14	
VADYIPQLAK	1	Unmodified	1116.6179	0.61791009	628	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				57.342	56.191	2	0.012039	49897	160511_QHF_FH_JSI9i_1	55.549	45.962			1.2986	1.0573	NaN	1	1	Median	1.2986	1.0573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61327000	26248000	35079000	61327000	26248000	35079000	0	0	0	0	0	0	0	0	0	53000	628	49916	320249	431227	431227			1	
VAEAGGGQLGSTAQGK	1	Unmodified	1429.7161	0.71612058	5194	Q9P1T7	MDFIC	MyoD family inhibitor domain-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	17.956	17.172	2	5.6255E-05	14497	160511_QHF_FH_JSI11i_1	80.522	55.085			0.90065	0.8126	28.25	2	2	Median	1.2129	0.99227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6688	0.66546	NaN	1	1	Median	33205000	17243000	15962000	17093000	7005900	10087000	0	0	0	0	0	0	16112000	10237000	5875000	53001	5194	49917	320250;320251;320252	431228;431229;431230	431228			3	
VAEAHENIIHGSGATGK	1	Unmodified	1689.8434	0.84344636	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							2	1	6	5	15.583	15.309	2;3;4	1.3443E-32	11849	160511_QHF_FH_JSI12i_3	151.44	134.42			1.0858	1.0219	20.134	13	2	Median	1.1343	0.96219	8.5109	2	0	Median	0.78774	0.97661	NaN	1	0	Median	1.105	1.0639	26.779	6	2	Median	0.89949	0.90771	15.928	4	0	Linear	2811300000	1386900000	1424300000	215840000	107520000	108320000	166840000	83973000	82868000	776760000	333320000	443440000	1651800000	862110000	789710000	53002	2266	49918	320253;320254;320255;320256;320257;320258;320259;320260;320261;320262;320263;320264;320265;320266	431231;431232;431233;431234;431235;431236;431237;431238;431239;431240;431241;431242;431243;431244;431245;431246;431247;431248;431249	431249			19	
VAEAVATFLIR	0	Unmodified	1188.6867	0.68665836	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		74.676	73.952	2	0.0059822	65213	160511_QHF_FH_JSI9i_2	52.725	40.678			0.87846	0.88369	5.2958	3	0	Median	1.1155	0.96168	NaN	1	0	Median	0.72009	0.87235	NaN	1	0	Median	0.87846	0.88369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	330450000	158520000	171930000	97063000	46570000	50493000	90525000	49029000	41495000	142870000	62923000	79942000	0	0	0	53003	5650	49919	320267;320268;320269	431250;431251;431252;431253	431250			4	
VAEDEAEAAAAAK	1	Unmodified	1244.5885	0.58846046	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.04	4.78	6	7	7		4	4				4	6	9	9	23.516	21.175	2;3	1.8531E-22	18193	160511_QHF_FH_JSI9i_1	179.57	158.13			0.96148	1.0348	36.199	18	10	Median	1.4733	1.3024	48.492	3	2	Median	0.89162	1.0551	34.754	4	2	Median	1.0331	0.97885	32.158	5	3	Median	0.91749	0.98505	38.689	6	3	Median	24421000000	11889000000	12531000000	5718400000	2391100000	3327300000	4823300000	2405700000	2417500000	6427300000	3186900000	3240400000	7451500000	3905800000	3545800000	53004	895	49920	320270;320271;320272;320273;320274;320275;320276;320277;320278;320279;320280;320281;320282;320283;320284;320285;320286;320287;320288;320289;320290;320291;320292;320293;320294;320295;320296;320297	431254;431255;431256;431257;431258;431259;431260;431261;431262;431263;431264;431265;431266;431267;431268;431269;431270;431271;431272;431273;431274;431275;431276;431277;431278;431279;431280;431281;431282;431283;431284;431285;431286;431287;431288;431289;431290;431291	431279			38	
VAEDFVSPEHVK	1	Unmodified	1355.6721	0.67213051	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	36.014	35.209	3	0.00047903	30670	160511_QHF_FH_JSI9i_2	58.098	50.836			1.2325	1.1918	22.475	5	0	Median	1.2814	1.0927	NaN	1	0	Median	1.0304	1.2534	NaN	1	0	Median	1.0057	1.0011	24.664	2	0	Median	1.4159	1.5614	NaN	1	0	Median	326100000	151250000	174840000	60078000	27777000	32301000	76016000	40558000	35458000	113850000	50309000	63540000	76154000	32611000	43544000	53005	3239	49921	320298;320299;320300;320301;320302	431292;431293;431294;431295;431296;431297;431298;431299	431295			8	
VAEEEETSVK	1	Unmodified	1119.5295	0.52954859	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.895	11.4	2	0.0030081	8899	160511_QHF_FH_JSI9i_1	57.032	31.473			0.74311	0.60629	31.494	3	2	Median	0.74311	0.60629	NaN	1	0	Median	0.75445	0.89138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45627	0.47752	NaN	1	1	Median	386220000	241300000	144920000	136300000	79535000	56764000	112830000	68575000	44254000	0	0	0	137090000	93189000	43900000	53006	5544	49922	320303;320304;320305	431300;431301;431302;431303	431303			4	
VAEEHAPSIVFIDEIDAIGTK	1	Unmodified	2253.1529	0.15287841	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.606	1	7	5							3	2	5	3	96.291	95.955	3;4	7.4045E-16	84103	160511_QHF_FH_JSI11i_2	138.04	130.05			1.1997	1.0647	16.582	10	2	Median	1.2135	1.0372	8.8096	2	0	Median	0.78998	0.95171	8.5722	2	0	Median	1.3877	1.3109	16.208	4	2	Median	1.0868	1.1409	14.888	2	0	Median	896400000	443210000	453200000	154080000	72544000	81538000	185680000	106080000	79604000	309930000	151160000	158770000	246710000	113430000	133280000	53007	1983	49923	320306;320307;320308;320309;320310;320311;320312;320313;320314;320315;320316;320317;320318	431304;431305;431306;431307;431308;431309;431310;431311;431312;431313;431314;431315;431316;431317;431318;431319;431320;431321;431322;431323;431324;431325	431318			22	
VAEELALEQAK	1	Unmodified	1199.6398	0.63976774	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	40.196	39.61	2	0.00011118	34867	160511_QHF_FH_JSI9i_1	85.355	67.49			1.0036	0.97055	24.546	5	2	Median	1.0687	0.8697	NaN	1	0	Median	0.74725	0.88448	41.798	2	2	Median	0.98923	0.97055	NaN	1	0	Median	1.1332	1.1823	NaN	1	0	Median	2212700000	1146100000	1066600000	302860000	152860000	150000000	981560000	528690000	452870000	459150000	225770000	233380000	469090000	238750000	230340000	53008	5098	49924	320319;320320;320321;320322;320323	431326;431327;431328;431329;431330;431331;431332;431333;431334	431332			9	
VAEELALEQAKK	2	Unmodified	1327.7347	0.73473076	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	32.359	31.503	2;3	0.033987	26540	160511_QHF_FH_JSI12i_2	24.929	17.064			0.72937	0.76207	55.187	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52503	0.51584	NaN	1	1	Median	1.0132	1.1258	NaN	1	0	Median	91428000	49549000	41879000	0	0	0	0	0	0	12910000	9024200	3886100	78517000	40525000	37992000	53009	5098	49925	320324;320325	431335;431336	431335			2	
VAEELIFGTDHITTGASSDFDNATK	1	Unmodified	2638.2399	0.23985552	4261	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	76.829	75.9	3	0.00012242	66645	160511_QHF_FH_JSI11i_2	49.25	41.677			0.30859	0.31675	43.829	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23693	0.23234	NaN	1	1	Median	0.40193	0.43182	NaN	1	1	Median	93311000	65229000	28082000	0	0	0	0	0	0	48736000	34002000	14734000	44575000	31226000	13348000	53010	4261	49926	320326;320327	431337;431338	431338			2	
VAEEMTFFPK	1	Unmodified	1197.574	0.57399637	185	O14656	TOR1A	Torsin-1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		63.33	62.797	2	0.0025614	54569	160511_QHF_FH_JSI11i_2	72.928	53.834			0.68293	0.6752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68293	0.6752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47680000	33339000	14341000	0	0	0	0	0	0	47680000	33339000	14341000	0	0	0	53011	185	49927	320328	431339;431340	431339			2	
VAEFHTELER	0	Unmodified	1229.6041	0.60405094	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	1	4	4	30.343	29.757	2;3	1.1962E-05	26135	160511_QHF_FH_JSI10i_2	79.201	62.57			0.87465	0.88888	27.512	10	3	Median	1.0131	0.88142	NaN	1	0	Median	0.92452	1.1284	NaN	1	0	Median	0.87465	0.87628	22.414	4	2	Median	0.75763	0.85514	40.164	4	1	Median	977090000	493320000	483770000	98087000	48648000	49439000	124210000	70369000	53840000	453390000	226300000	227090000	301410000	148000000	153410000	53012	1627	49928	320329;320330;320331;320332;320333;320334;320335;320336;320337;320338	431341;431342;431343;431344;431345;431346;431347;431348;431349;431350;431351	431349			9	
VAEFHTELERLPAK	1	Unmodified	1638.873	0.87295558	1627	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	46.31	45.456	4	1.1574E-05	39999	160511_QHF_FH_JSI11i_3	120.14	101.4			0.96723	0.92986	26.97	4	0	Linear	0.68353	0.56186	NaN	1	0	Median	0.83352	0.97661	NaN	1	0	Median	1.0287	1.0021	NaN	1	0	Median	0.85531	0.88534	NaN	1	0	Median	1101300000	549620000	551690000	22015000	12632000	9382700	97099000	53344000	43755000	518060000	255930000	262130000	464130000	227710000	236420000	53013	1627	49929	320339;320340;320341;320342	431352;431353;431354;431355;431356	431353			5	
VAEGQVTCPYLPPFPAR	0	Unmodified	1900.9506	0.95055397	4033	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		74.891	74.569	2	0.00060282	67818	160511_QHF_FH_JSI11i_1	65.395	50.193			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53014	4033	49930	320343	431357	431357			1	
VAEIEHAEK	1	Unmodified	1024.5189	0.51892433	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	5.87	3	9	6				4	5		5	7	7	8	10.816	7.8254	2;3	3.5787E-05	6817	160511_QHF_FH_JSI9i_3	99.802	77.062			1.2221	1.1072	44.089	26	11	Median	1.2843	1.0991	11.014	5	1	Median	0.89893	1.0992	21.847	7	2	Median	1.1295	1.1368	30.639	6	1	Median	1.3208	1.4277	75.512	8	7	Median	14232000000	6932200000	7299800000	2220900000	985820000	1235100000	3621900000	1959300000	1662600000	4266600000	1914200000	2352400000	4122500000	2072900000	2049700000	53015	2090	49931	320344;320345;320346;320347;320348;320349;320350;320351;320352;320353;320354;320355;320356;320357;320358;320359;320360;320361;320362;320363;320364;320365;320366;320367;320368;320369;320370	431358;431359;431360;431361;431362;431363;431364;431365;431366;431367;431368;431369;431370;431371;431372;431373;431374;431375;431376;431377;431378;431379;431380;431381;431382;431383;431384;431385;431386;431387;431388;431389;431390;431391;431392;431393;431394;431395	431376			38	
VAEIEHAEKEK	2	Acetyl (K)	1323.667	0.66704513	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	24.53	16.886	2	0.012272	10527	160513_QHF_FH_JSI12Kac_4	62.823	50.975			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2017200	2017200	0	0	0	0	0	0	0	0	0	0	2017200	2017200	0	53016	2090	49932	320371	431396	431396	2176		1	
VAEITELILK	1	Unmodified	1127.6802	0.680176	2243	Q06265	EXOSC9	Exosome complex component RRP45	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	81.199	80.416	2	0.0015325	69452	160511_QHF_FH_JSI12i_2	65.305	53.258			0.85489	0.93618	10.926	4	0	Median	1.217	1.0703	NaN	1	0	Median	0.73888	0.90442	NaN	1	0	Median	0.82928	0.82647	NaN	1	0	Median	0.8813	0.96905	NaN	1	0	Median	227540000	119790000	107750000	35988000	13989000	21999000	44367000	26258000	18109000	86967000	48604000	38363000	60214000	30937000	29277000	53017	2243	49933	320372;320373;320374;320375	431397;431398	431397			2	
VAEKEAK	2	Acetyl (K)	815.43888	0.43888309	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	7.5309	0.42519	2	0.03806	2883	160513_QHF_FH_JSI12Kac_3	65.246	29.061			0.38654	0.4098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38654	0.4098	NaN	1	0	Median	10764000	7736100	3027900	0	0	0	0	0	0	0	0	0	10764000	7736100	3027900	53018	2614	49934	320376	431399	431399			1	
VAELILHGQEEEKPAQDQAK	2	Unmodified	2232.1386	0.13862533	3420	Q8IWE2	FAM114A1	Protein NOXP20	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	34.231	34.165	3;4	1.6946E-06	29662	160511_QHF_FH_JSI11i_3	97.618	74.743			0.46968	0.45978	95.161	5	5	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81197	0.76308	86.152	2	2	Median	0.29345	0.29615	119.95	3	3	Plateau	252080000	141800000	110280000	0	0	0	0	0	0	110200000	51716000	58480000	141880000	90081000	51798000	53019	3420	49935	320377;320378;320379;320380;320381	431400;431401;431402;431403;431404	431400			5	
VAELSSDDFHLDR	0	Unmodified	1502.7001	0.70013617	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	52.145	51.405	2;3	2.6861E-06	43978	160511_QHF_FH_JSI12i_2	116.51	107.69			1.0868	1.1335	14.869	8	1	Median	1.0992	0.9322	NaN	1	0	Median	0.94446	1.1262	2.4817	2	0	Median	1.2295	1.2589	6.0749	3	0	Plateau	1.0701	1.1228	32.558	2	1	Median	1022200000	495040000	527200000	163780000	63414000	100370000	275700000	157030000	118670000	364300000	170330000	193970000	218470000	104270000	114200000	53020	3903	49936	320382;320383;320384;320385;320386;320387;320388;320389	431405;431406;431407;431408;431409	431406			4	
VAELVHFLLLK	1	Unmodified	1280.7856	0.78564412	1562	P43357	MAGEA3	Melanoma-associated antigen 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	85.561	77.674	3	3.8064E-08	42365	160513_QHF_FH_JSI9Kac_6	112.13	28.729			1.2211	1.2611	70.534	6	6	Median	1.2911	1.0867	135.18	2	2	Median	0.99555	1.1587	72.404	2	2	Median	1.0233	0.99378	NaN	1	1	Median	1.4571	1.6003	NaN	1	1	Median	279660000	119280000	160380000	116890000	57170000	59722000	124950000	47757000	77191000	23195000	10690000	12506000	14625000	3659800	10965000	53021	1562	49937	320390;320391;320392;320393;320394;320395	431410;431411;431412;431413;431414;431415	431411			6	
VAELVHILK	1	Unmodified	1020.6332	0.63316622	5005	Q9NUL7	DDX28	Probable ATP-dependent RNA helicase DDX28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	51.483	50.515	3	0.0023355	44344	160511_QHF_FH_JSI9i_2	53.327	39.12			1.787	1.5759	86.222	7	7	Median	1.787	1.5759	NaN	1	1	Median	1.1637	1.4283	123.09	2	2	Median	1.028	1.0476	109.31	2	2	Median	1.0868	1.202	126.35	2	2	Median	151530000	71398000	80136000	16627000	7758000	8869400	42575000	19857000	22717000	55910000	27094000	28816000	36422000	16689000	19733000	53022	5005	49938	320396;320397;320398;320399;320400;320401;320402;320403	431416;431417;431418;431419;431420;431421;431422;431423	431419			8	
VAEPGAEATSSTGEESGSEHPPAVPMHNK	1	Unmodified	2902.3039	0.30392911	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.33	0.471		2	1							1	1		1	34.606	33.903	4	3.8162E-09	29457	160511_QHF_FH_JSI9i_2	67.31	66.606			0.85031	0.85021	8.7607	3	0	Median	0.99878	0.84968	NaN	1	0	Median	0.79745	0.98921	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85031	0.85021	NaN	1	0	Median	162350000	93168000	69182000	55128000	32867000	22262000	61139000	39418000	21721000	0	0	0	46082000	20883000	25199000	53023	2561	49939	320404;320405;320406	431424;431425;431426;431427;431428	431424			5	
VAEQVLNAVNK	1	Unmodified	1183.6561	0.65608651	4836	Q9HB40	SCPEP1	Retinoid-inducible serine carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	38.483	37.864	2	8.8291E-05	33524	160511_QHF_FH_JSI9i_1	99.688	76.948			1.1455	1.0334	45.117	4	2	Median	1.1247	0.91592	NaN	1	1	Median	1.1666	1.3566	NaN	1	0	Median	1.1971	1.1659	NaN	1	0	Median	0.45236	0.48732	NaN	1	1	Median	226300000	123460000	102840000	34880000	19659000	15221000	71840000	39255000	32585000	82708000	38316000	44392000	36871000	26227000	10644000	53024	4836	49940	320407;320408;320409;320410	431429;431430;431431	431431			3	
VAESTEEPAGSNR	0	Unmodified	1345.611	0.61098681	2599	Q15011	HERPUD1	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				9.6623	8.9292	2	0.00012322	6479	160511_QHF_FH_JSI9i_1	73.499	56.828			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53025	2599	49941	320411	431432	431432			1	
VAETANEEEVK	1	Unmodified	1217.5776	0.57756142	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.293	12.87	2	2.6695E-05	10666	160511_QHF_FH_JSI12i_1	99.568	82.792			1.0009	1.0498	3.9633	4	0	Median	1.3494	1.0921	NaN	1	0	Median	0.89321	1.0489	NaN	1	0	Median	1.0026	0.99187	NaN	1	0	Median	0.9992	1.0506	NaN	1	0	Median	863630000	473360000	390270000	180800000	84188000	96611000	235000000	143360000	91638000	201810000	106560000	95251000	246030000	139260000	106770000	53026	1945	49942	320412;320413;320414;320415	431433;431434	431433			2	
VAETANEEEVKK	2	Unmodified	1345.6725	0.67252444	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								2	5	1	2	10.7	10.281	2;3	2.7604E-05	7870	160511_QHF_FH_JSI11i_1	73.466	62.52			0.9038	1.0136	26.433	9	4	Median	1.0714	0.8895	40.946	2	0	Median	0.81876	0.99095	33.067	4	3	Median	1.1626	1.1417	NaN	1	0	Median	0.9864	1.0188	10.276	2	1	Median	1072100000	553170000	518980000	277520000	119050000	158470000	331630000	195530000	136100000	191230000	91153000	100070000	271760000	147430000	124330000	53027	1945	49943	320416;320417;320418;320419;320420;320421;320422;320423;320424;320425	431435;431436;431437;431438;431439;431440;431441;431442;431443;431444;431445;431446;431447	431435			13	
VAETAVQLFISGDK	1	Unmodified	1476.7824	0.78240924	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.676	5	9	3							3	7	3	4	78.058	77.369	2;3	5.1124E-40	68332	160511_QHF_FH_JSI9i_2	203.11	159.8			0.831	0.96855	42.011	17	9	Median	1.1602	0.96855	26.413	3	1	Median	0.69753	0.83693	57.015	7	4	Median	0.61046	1.0112	34.799	3	2	Plateau	0.96833	1.0427	29.977	4	2	Median	1068300000	536020000	532260000	158510000	80894000	77614000	358390000	186580000	171810000	302690000	137820000	164870000	248700000	130730000	117970000	53028	2010	49944	320426;320427;320428;320429;320430;320431;320432;320433;320434;320435;320436;320437;320438;320439;320440;320441;320442	431448;431449;431450;431451;431452;431453;431454;431455;431456;431457;431458;431459;431460;431461;431462;431463;431464;431465;431466	431459			19	
VAEVAPEERENVAVAK	1	Unmodified	1709.8948	0.89481323	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	2	0.632	1	3	1							1	2	1	1	30.75	30.199	3	0.0174	25482	160511_QHF_FH_JSI12i_3	43.408	25.043			0.90087	0.98149	17.255	5	1	Median	1.193	0.98149	NaN	1	0	Median	0.98485	1.1667	10.931	2	0	Median	0.90087	0.88494	NaN	1	0	Median	0.85729	0.80941	NaN	1	1	Median	181280000	87825000	93457000	25982000	12116000	13867000	68812000	32197000	36614000	55112000	26949000	28163000	31376000	16562000	14813000	53029	3061	49945	320443;320444;320445;320446;320447	431467;431468;431469	431469			3	
VAEVEGEQVDNK	1	Unmodified	1315.6256	0.62557424	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	2	2	20.502	18.372	2	3.3135E-07	15888	160511_QHF_FH_JSI12i_1	110.84	87.409			1.1105	1.1911	13.153	4	4	Median	NaN	NaN	NaN	0	0	Median	1.1096	1.3215	NaN	1	1	Median	1.1007	1.0731	0.057204	2	2	Median	1.2928	1.3704	NaN	1	1	Median	798420000	449950000	348470000	0	0	0	262720000	150800000	111920000	244210000	141030000	103180000	291480000	158120000	133360000	53030	655	49946	320448;320449;320450;320451;320452;320453;320454	431470;431471;431472;431473;431474;431475;431476	431472			7	
VAEVLFDAADANAIEEVNLAYENVK	1	Unmodified	2706.3388	0.33884128	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.5	101.42	3	3.4256E-17	92178	160511_QHF_FH_JSI10i_1	124.81	117.27			0.84533	0.91861	0.90607	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7926	0.92451	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90157	0.91274	NaN	1	0	Median	283560000	150940000	132610000	0	0	0	169660000	92158000	77506000	0	0	0	113890000	58786000	55107000	53031	2517	49947	320455;320456	431477;431478;431479	431479			3	
VAEVLNDPENMEK	1	Unmodified	1486.6974	0.69735898	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	43.864	43.2	2	6.0753E-05	39015	160511_QHF_FH_JSI11i_1	107.09	92.882			0.78263	0.72052	15.798	4	0	Linear	1.2367	1.0338	NaN	1	0	Median	0.69656	0.81021	NaN	1	0	Median	0.73145	0.71168	NaN	1	0	Median	0.8374	0.89657	NaN	1	0	Median	418960000	228720000	190240000	86026000	41209000	44817000	115150000	67596000	47552000	125740000	69981000	55762000	92039000	49933000	42107000	53032	2258	49948	320457;320458;320459;320460;320461	431480;431481;431482;431483;431484;431485;431486	431480			7	
VAEVLSSLLGGEGHFSK	1	Unmodified	1728.9046	0.90464964	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	79.353	78.89	3	3.3417E-07	70361	160511_QHF_FH_JSI11i_3	118.31	90.025			0.78331	0.81135	94.373	5	4	Median	NaN	NaN	NaN	0	0	Median	0.86817	1.0464	142.61	2	2	Median	1.2405	1.1666	120.03	2	2	Median	0.78331	0.81135	NaN	1	0	Median	502140000	259330000	242800000	0	0	0	55171000	30694000	24477000	242130000	120590000	121540000	204830000	108050000	96785000	53033	5138	49949	320462;320463;320464;320465;320466;320467;320468	431487;431488;431489;431490;431491;431492;431493;431494;431495;431496	431487			10	
VAEVQQVLRPAEK	1	Unmodified	1465.8253	0.8252771	2468	Q13751	LAMB3	Laminin subunit beta-3	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	37.416	37.335	3	0.016737	32825	160511_QHF_FH_JSI11i_3	38.799	24.641			0.95537	0.92977	11.005	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0823	1.005	NaN	1	0	Median	0.84329	0.86016	NaN	1	0	Median	109810000	51259000	58551000	0	0	0	0	0	0	68310000	30016000	38294000	41500000	21243000	20257000	53034	2468	49950	320469;320470	431497	431497			1	
VAEWREEGK	1	Unmodified	1102.5407	0.5407224	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		12.859	12.859	3	0.0029406	10204	160511_QHF_FH_JSI11i_3	55.064	35.97			0.84647	0.80805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84647	0.80805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	422770000	185610000	237160000	0	0	0	0	0	0	422770000	185610000	237160000	0	0	0	53035	5487	49951	320471	431498	431498			1	
VAFDELVR	0	Unmodified	947.50763	0.50763136	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	58.485	57.555	2	0.0040834	49335	160511_QHF_FH_JSI12i_2	76.774	49.457			0.90295	0.98988	9.5588	4	1	Median	1.3658	1.1684	NaN	1	0	Median	0.8016	0.99441	NaN	1	0	Median	0.92681	0.93736	NaN	1	0	Median	0.8797	0.98536	NaN	1	1	Median	517190000	247420000	269770000	113860000	49852000	64003000	110970000	54643000	56330000	174700000	77010000	97693000	117660000	65917000	51740000	53036	427	49952	320472;320473;320474;320475	431499;431500;431501	431499			3	
VAFDPEQK	1	Unmodified	932.46035	0.46034682	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				29.502	28.228	2	0.01142	24560	160511_QHF_FH_JSI9i_1	53.833	34.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53037	2561	49953	320476	431502	431502			1	
VAFEDYISNATHMLSR	0	Unmodified	1852.8778	0.87778296	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	94.196	94.193	3	3.8894E-08	81568	160511_QHF_FH_JSI12i_3	138.19	127.33			1.1834	1.143	1.4825	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1976	1.131	NaN	1	0	Median	1.1694	1.155	NaN	1	0	Median	65817000	29499000	36318000	0	0	0	0	0	0	22564000	10591000	11973000	43253000	18908000	24344000	53038	591	49954	320477;320478	431503;431504	431504			2	
VAFERGEEPGK	1	Unmodified	1217.6041	0.60405094	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	4	3	18.622	18.179	2;3	0.00015244	15172	160511_QHF_FH_JSI11i_3	97.813	72.192			1.0996	1.0991	18.927	10	0	Median	1.2573	1.0692	NaN	1	0	Median	0.93609	1.1157	15.079	2	0	Median	1.257	1.2	7.9868	4	0	Median	0.81349	0.83635	18.822	3	0	Median	2975400000	1160100000	1815200000	306640000	132770000	173870000	532330000	260110000	272220000	1770600000	578240000	1192300000	365820000	189020000	176810000	53039	2265	49955	320479;320480;320481;320482;320483;320484;320485;320486;320487;320488	431505;431506;431507;431508;431509;431510;431511;431512;431513;431514;431515;431516;431517	431508			13	
VAFGSLAANGPTTLVDK	1	Unmodified	1659.8832	0.88318591	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	75.4	75.003	2;3	5.4317E-22	65053	160511_QHF_FH_JSI12i_3	173.72	153.51			0.84554	0.89556	38.806	5	2	Median	NaN	NaN	NaN	0	0	Median	0.84554	0.92914	NaN	1	1	Median	1.3146	1.2317	68.303	2	1	Median	0.8309	0.86539	4.8459	2	0	Median	434840000	225540000	209300000	0	0	0	29800000	16251000	13548000	193840000	98107000	95731000	211200000	111180000	100030000	53040	5382	49956	320489;320490;320491;320492;320493	431518;431519;431520;431521;431522;431523	431521			5	
VAFITGGGSGIGFR	0	Unmodified	1337.7092	0.70918471	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				71.96	70.478	2	0.0038988	58021	160511_QHF_FH_JSI9i_3	55.314	32.673			1.331	1.0965	NaN	1	0	Median	1.331	1.0965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28717000	11292000	17425000	28717000	11292000	17425000	0	0	0	0	0	0	0	0	0	53041	5001	49957	320494	431524	431524			1	
VAFITGGGTGLGK	1	Unmodified	1176.6503	0.65027285	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	5.72			4				1	4	4	3	5	3	2	61.31	54.303	2	3.2491E-05	46676	160511_QHF_FH_JSI12i_3	117.52	66.252			1.0051	1.0173	18.211	12	3	Median	1.3443	1.0974	29.827	3	1	Median	0.93459	1.0846	17.491	4	1	Median	1.043	1.0035	16.037	3	1	Median	0.87638	0.9253	13.908	2	0	Median	1605800000	797740000	808020000	127370000	59951000	67418000	145960000	73220000	72743000	587220000	288330000	298890000	745200000	376230000	368970000	53042	2754	49958	320495;320496;320497;320498;320499;320500;320501;320502;320503;320504;320505;320506;320507	431525;431526;431527;431528;431529;431530;431531;431532;431533;431534;431535;431536;431537;431538	431536			14	
VAFLWDLGSGSTR	0	Unmodified	1407.7147	0.71466402	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	86.955	86.823	2	0.031247	75372	160511_QHF_FH_JSI12i_3	56.359	45.53			0.88409	0.92478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88409	0.92478	NaN	1	0	Median	14089000	7880700	6208200	0	0	0	0	0	0	0	0	0	14089000	7880700	6208200	53043	1257	49959	320508	431539	431539			0	
VAFSVAR	0	Unmodified	748.42317	0.42317345	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.48	2	4	4				1	1	4	4	5	4	3	33.779	29.837	2	0.0033218	26188	160511_QHF_FH_JSI10i_2	105.27	15.366			0.97127	1.1048	20.068	16	0	Median	1.3436	1.1262	19.798	4	0	Median	0.92419	1.1078	7.6574	5	0	Median	0.89945	0.86889	16.903	4	0	Median	0.89601	0.90882	27.402	3	0	Median	19353000000	9133200000	10220000000	4246100000	1796800000	2449300000	4549900000	2217100000	2332800000	5839000000	2830700000	3008300000	4718300000	2288600000	2429700000	53044	1484	49960	320509;320510;320511;320512;320513;320514;320515;320516;320517;320518;320519;320520;320521;320522;320523;320524	431540;431541;431542;431543;431544;431545;431546;431547;431548;431549;431550;431551;431552;431553;431554;431555	431553			16	
VAFTGSTEVGHLIQK	1	Unmodified	1585.8464	0.84640648	1365	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	58.241	57.979	2	4.3295E-09	49851	160511_QHF_FH_JSI12i_3	101.93	86.663			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53045	1365	49961	320525	431556	431556			1	
VAFVDMLLK	1	Unmodified	1034.5834	0.58343884	3375	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	93.551	93.113	2	0.024179	82489	160511_QHF_FH_JSI10i_2	41.448	35.409			0.86262	0.96957	28.251	4	0	Median	0.76849	0.66205	NaN	1	0	Median	0.83374	1.0725	NaN	1	0	Median	0.89249	0.87654	NaN	1	0	Median	1.1417	1.2781	NaN	1	0	Median	44968000	23018000	21950000	11377000	4999700	6377000	12830000	8014100	4816000	11702000	5662400	6039500	9059000	4341300	4717700	53046	3375	49962	320526;320527;320528;320529	431557	431557			1	
VAFVEKLTK	2	Acetyl (K)	1075.6277	0.6277465	4159	Q96KP1	EXOC2	Exocyst complex component 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.233	62.502	2	0.020855	33423	160513_QHF_FH_JSI11Kac_5	53.327	30.587			0.62949	0.62799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62949	0.62799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7631300	4611700	3019600	0	0	0	0	0	0	7631300	4611700	3019600	0	0	0	53047	4159	49963	320530	431558	431558	3062		1	
VAFVNWINK	1	Unmodified	1089.5971	0.59711507	2551	Q14651	PLS1	Plastin-1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				72.927	71.45	2	0.003621	58712	160511_QHF_FH_JSI9i_3	69.998	61.086			1.6066	1.2883	NaN	1	1	Median	1.6066	1.2883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92722000	38118000	54604000	92722000	38118000	54604000	0	0	0	0	0	0	0	0	0	53048	2551	49964	320531	431559	431559			1	
VAGALAEAGVGLEEIAK	1	Unmodified	1596.8723	0.87228688	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	4	4	2	80.974	80.367	2;3	2.8752E-08	70643	160511_QHF_FH_JSI11i_2	131.24	112.03			0.82278	0.91964	8.1388	12	2	Median	1.0174	0.88195	4.2589	2	0	Median	0.70263	0.93919	8.3421	4	1	Linear	0.84935	0.83772	11.839	4	1	Median	0.8294	0.93924	1.0097	2	0	Median	576710000	299540000	277170000	100060000	42396000	57660000	172570000	103170000	69400000	201050000	105520000	95535000	103030000	48453000	54576000	53049	2817	49965	320532;320533;320534;320535;320536;320537;320538;320539;320540;320541;320542;320543	431560;431561;431562;431563;431564;431565;431566;431567;431568;431569;431570;431571;431572;431573;431574;431575;431576	431571			17	
VAGALVQNTEK	1	Unmodified	1128.6139	0.61388734	5460	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	1	2	3	20.888	20.348	2	0.00036045	17382	160511_QHF_FH_JSI11i_1	79.986	49.731			1.1115	1.0756	42.643	7	4	Median	2.0584	1.8131	NaN	1	1	Median	0.79656	0.93063	NaN	1	0	Median	1.2043	1.1892	14.196	2	1	Median	1.5602	1.6005	58.964	3	2	Plateau	290230000	130340000	159890000	28078000	6268300	21810000	57268000	30737000	26531000	85066000	37234000	47832000	119820000	56100000	63718000	53050	5460	49966	320544;320545;320546;320547;320548;320549;320550	431577;431578;431579;431580;431581;431582;431583	431577			7	
VAGDLHKAQQSLELIQSK	2	Acetyl (K)	2006.0797	0.07965389	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		76.539	65.874	3	7.7075E-05	35063	160513_QHF_FH_JSI11Kac_5	75.358	65.301			0.26372	0.25594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26372	0.25594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7140000	5414800	1725200	0	0	0	0	0	0	7140000	5414800	1725200	0	0	0	53051	3328	49967	320551	431584	431584	2836		1	
VAGGAAPSK	1	Unmodified	756.413	0.41300269	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	5.1	6	2			1	2				1	4	5	1	5.8909	3.5014	2	0.0026943	3260	160511_QHF_FH_JSI11i_1	63.419	23.151			0.8964	0.92016	16.213	10	1	Median	1.1851	0.9649	NaN	1	0	Median	0.63882	0.75427	10.805	4	0	Median	1.0135	0.97641	11.012	4	1	Median	0.88603	0.94241	NaN	1	0	Median	4054200000	2104200000	1949900000	863850000	373780000	490070000	964050000	589400000	374650000	1278000000	655060000	622920000	948280000	485980000	462300000	53052	2586	49968	320552;320553;320554;320555;320556;320557;320558;320559;320560;320561;320562	431585;431586;431587;431588;431589;431590;431591;431592;431593;431594	431586			10	
VAGGAAPSKPASAK	2	Unmodified	1210.667	0.66698555	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	8.1376	7.8655	2;3	0.00073901	5373	160511_QHF_FH_JSI12i_3	107.06	91.174			1.0871	1.2629	21.684	9	2	Median	1.5923	1.337	8.0588	2	0	Median	0.94711	1.1076	17.868	3	2	Median	1.3785	1.2914	2.2952	2	0	Median	0.81498	0.83941	18.848	2	0	Median	2065300000	1000600000	1064700000	143170000	62704000	80465000	436710000	206170000	230540000	812070000	370310000	441770000	673320000	361380000	311930000	53053	2586	49969	320563;320564;320565;320566;320567;320568;320569;320570;320571	431595;431596;431597;431598;431599;431600;431601;431602;431603;431604;431605;431606;431607;431608;431609	431609			15	
VAGGAAPSKPASAK	2	Acetyl (K)	1252.6776	0.67755023	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	0.7					3	5	2			1	3	2	4	25.344	16.673	2;3	1.1732E-06	11263	160513_QHF_FH_JSI12Kac_3	107.85	88.576			1.0206	1.0623	9.5412	9	0	Median	NaN	NaN	NaN	0	0	Median	0.7589	0.91194	8.7614	3	0	Plateau	1.0223	0.99191	2.5375	2	0	Median	1.0311	1.1154	6.6193	4	0	Median	349430000	169480000	179950000	36611000	0	36611000	79594000	47925000	31669000	85063000	41657000	43407000	148160000	79898000	68264000	53054	2586	49969	320572;320573;320574;320575;320576;320577;320578;320579;320580;320581	431610;431611;431612;431613;431614;431615;431616;431617;431618;431619;431620;431621;431622;431623	431618	2568		14	
VAGHPLAQNER	0	Unmodified	1190.6156	0.61561868	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.14		6	8						3	5	5	4	3	8.4801	6.8233	2;3	2.6519E-09	5525	160511_QHF_FH_JSI11i_3	128.6	100.38			0.91781	0.96255	24.682	17	0	Median	1.4205	1.2126	16.202	5	0	Median	0.8574	1.0316	12.834	5	0	Median	0.89801	0.83808	35.422	4	0	Median	0.68195	0.6939	12.24	3	0	Median	3184900000	1559900000	1625000000	784230000	310490000	473740000	1422800000	704410000	718430000	633840000	347540000	286300000	343960000	197460000	146500000	53055	419	49970	320582;320583;320584;320585;320586;320587;320588;320589;320590;320591;320592;320593;320594;320595;320596;320597;320598	431624;431625;431626;431627;431628;431629;431630;431631;431632;431633;431634;431635;431636;431637;431638;431639;431640;431641;431642;431643;431644	431627			21	
VAGHPNIVINNAAGNFISPTER	0	Unmodified	2290.1818	0.18182755	2754	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.11	4.23		3	5						1	3	3	3		65.504	63.532	3;4	5.018E-37	53229	160511_QHF_FH_JSI10i_3	189.48	180.66			0.85791	0.95505	26.421	9	1	Median	1.1856	0.96565	22.758	3	0	Median	0.81913	0.95505	14.283	3	0	Median	0.67403	0.64647	45.264	3	1	Plateau	NaN	NaN	NaN	0	0	Median	2284600000	1207900000	1076700000	980050000	404010000	576040000	926050000	567070000	358990000	378450000	236800000	141660000	0	0	0	53056	2754	49971	320599;320600;320601;320602;320603;320604;320605;320606;320607	431645;431646;431647;431648;431649;431650;431651;431652;431653;431654;431655;431656	431648			10	
VAGHSLGYGFVNYVTAK	1	Unmodified	1781.9101	0.91006937	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			9						9	4	6	4	4	69.477	64.739	2;3	2.452E-96	35332	160513_QHF_FH_JSI10Kac_6	235.25	204.37			0.86975	0.87679	12.722	18	3	Median	1.0142	0.84869	18.149	4	0	Median	0.76178	0.87679	8.9574	6	3	Median	0.99778	0.94836	15.489	4	0	Median	0.84913	0.8819	8.6872	4	0	Median	9136300000	5080000000	4056300000	1867500000	931660000	935890000	2728600000	1718800000	1009800000	2928500000	1548400000	1380100000	1611700000	881090000	730580000	53057	2700	49972	320608;320609;320610;320611;320612;320613;320614;320615;320616;320617;320618;320619;320620;320621;320622;320623;320624;320625	431657;431658;431659;431660;431661;431662;431663;431664;431665;431666;431667;431668;431669;431670;431671;431672;431673;431674;431675;431676;431677;431678;431679;431680;431681;431682;431683;431684;431685;431686	431683			30	
VAGIAAALGGGVLGFTGGK	1	Unmodified	1614.9093	0.90934108	1886	P56962	STX17	Syntaxin-17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	97.077	96.71	2;3	2.7655E-16	78818	160511_QHF_FH_JSI9i_3	174.73	149.88			1.1222	1.0281	21.944	9	3	Median	1.1222	0.95222	23.57	3	2	Median	0.74652	0.87523	22.767	2	0	Median	1.3972	1.3386	7.76	2	0	Median	1.0603	1.0941	12.139	2	1	Median	109830000	49792000	60038000	29844000	10964000	18880000	19650000	11542000	8108700	19302000	9621300	9681200	41033000	17665000	23368000	53058	1886	49973	320626;320627;320628;320629;320630;320631;320632;320633;320634	431687;431688;431689;431690;431691;431692;431693;431694;431695;431696	431694			10	
VAGIAKVLVAQHDVYK	2	Acetyl (K)	1751.9934	0.99340506	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	76.613	67.23	3	6.7867E-05	36659	160513_QHF_FH_JSI11Kac_6	87.388	70.106			0.3491	0.36026	2.5799	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37473	0.36689	NaN	1	0	Median	0.32522	0.35374	NaN	1	0	Median	105850000	80073000	25773000	0	0	0	0	0	0	88804000	68975000	19829000	17043000	11098000	5944500	53059	1041	49974	320635;320636	431697;431698	431697	873		2	
VAGIESHSELQISR	0	Unmodified	1524.7896	0.78961988	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	37.297	37.134	2	0.00034914	31527	160511_QHF_FH_JSI12i_3	100.55	74.435			1.1115	1.1227	8.2191	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.1227	8.2191	2	2	Median	111100000	50298000	60807000	0	0	0	0	0	0	0	0	0	111100000	50298000	60807000	53060	2587	49975	320637;320638	431699;431700	431699			2	
VAGIFPR	0	Unmodified	758.44391	0.44390889	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		38.417	37.803	2	0.015675	33058	160511_QHF_FH_JSI9i_2	64.276	8.1813			1.0623	1.0247	9.8088	4	0	Median	1.2449	1.0643	NaN	1	0	Median	0.73485	0.88306	NaN	1	0	Median	1.0623	1.0427	7.8287	2	0	Median	NaN	NaN	NaN	0	0	Median	464670000	241430000	223240000	88128000	37389000	50739000	92174000	48098000	44076000	284370000	155940000	128430000	0	0	0	53061	751	49976	320639;320640;320641;320642	431701;431702;431703;431704	431703			4	
VAGIHKK	2	Unmodified	751.47046	0.47045799	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	2.628	2.4931	2	0.0075206	2073	160511_QHF_FH_JSI10i_3	87.582	21.684			1.3818	1.3229	134.28	6	3	Median	1.8243	1.458	NaN	1	0	Median	1.0467	1.2004	NaN	1	0	Median	1.2093	1.14	142.01	2	2	Median	0.81975	0.8241	259.73	2	1	Median	4366500000	2516800000	1849600000	1946800000	1130500000	816290000	1875400000	1122200000	753270000	241210000	110210000	131000000	303050000	153970000	149080000	53062	1275	49977	320643;320644;320645;320646;320647;320648	431705;431706;431707;431708;431709;431710;431711;431712;431713;431714;431715	431709			11	
VAGILTVK	1	Unmodified	799.51674	0.51673948	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							2	3	2	1	40.833	40.028	2	0.025833	35348	160511_QHF_FH_JSI10i_2	42.599	11.987			0.99513	1.0814	8.7607	8	0	Median	1.2962	1.0919	3.2091	2	0	Median	0.89315	1.0956	7.5198	3	0	Median	0.99513	0.99196	4.64	2	0	Median	1.2511	1.263	NaN	1	0	Median	1257400000	655470000	601980000	301570000	138840000	162730000	415830000	237840000	177990000	375780000	196910000	178860000	164270000	81870000	82403000	53063	4315	49978	320649;320650;320651;320652;320653;320654;320655;320656	431716;431717;431718;431719;431720;431721;431722	431721			7	
VAGLAVFHGK	1	Unmodified	997.5709	0.57090032	4199	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	3	1	1	37.733	36.816	2;3	0.00010789	31090	160511_QHF_FH_JSI12i_3	73.985	57.782			1.0942	1.0995	41.689	5	2	Median	1.8152	1.5173	NaN	1	1	Median	0.74895	0.86474	68.47	2	1	Median	0.97906	0.92802	NaN	1	0	Median	1.0942	1.0995	NaN	1	0	Median	222860000	101310000	121550000	14292000	5967600	8324400	63734000	26608000	37126000	56904000	27694000	29209000	87930000	41038000	46893000	53064	4199	49979	320657;320658;320659;320660;320661;320662	431723;431724;431725;431726;431727;431728	431728			6	
VAGMAVYHGK	1	Unmodified	1031.5222	0.52223557	1597	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	21.371	17.578	3	0.0063922	10345	160513_QHF_FH_JSI10Kac_6	34.721	27.075			0.67357	0.73025	72.49	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0625	1.2192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.42701	0.43739	NaN	1	1	Median	71823000	45866000	25956000	0	0	0	5268500	3159300	2109300	0	0	0	66554000	42707000	23847000	53065	1597	49980	320663;320664	431729;431730	431730			2	
VAGMDVELTVEER	0	Unmodified	1446.7024	0.70244436	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	3	1	3	61.082	60.217	2	5.2091E-05	54599	160511_QHF_FH_JSI10i_1	77.124	53.4			1.1016	1.1335	8.5928	6	3	Median	1.3604	1.133	NaN	1	0	Median	0.8503	1.0127	NaN	1	1	Median	1.3004	1.2783	NaN	1	0	Median	1.0908	1.134	6.4439	3	2	Median	631580000	299960000	331620000	77597000	34062000	43535000	182230000	86908000	95317000	118390000	51967000	66424000	253360000	127020000	126350000	53066	1990	49981	320665;320666;320667;320668;320669;320670;320671;320672	431731;431732;431733;431734;431735;431736;431737;431738	431736			8	
VAGMDVELTVEER	0	Oxidation (M)	1462.6974	0.69735898	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	0			By matching	By MS/MS	1	0	2											1	1	44.433	43.921	2	0.0015119	40141	160511_QHF_FH_JSI12i_1	66.267	52.913			2.1708	2.1774	69	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.376	1.3367	NaN	1	0	Median	3.4246	3.5467	NaN	1	0	Median	153520000	55076000	98446000	0	0	0	0	0	0	42820000	13171000	29650000	110700000	41905000	68796000	53067	1990	49981	320673;320674	431739;431740	431739		1658	2	
VAGMLQRPDQLDKVEQYR	1	Acetyl (K)	2187.1106	0.11063644	433	O60645	EXOC3	Exocyst complex component 3	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		71.135	62.586	3	1.1444E-10	34515	160513_QHF_FH_JSI10Kac_6	120.11	105.49			0.86545	1.0387	62.799	3	1	Plateau	1.0825	0.92899	NaN	1	0	Median	0.86545	1.0387	NaN	1	0	Median	2.9636	2.9024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	139950000	74268000	65680000	22811000	10821000	11989000	93288000	58015000	35273000	23849000	5431800	18417000	0	0	0	53068	433	49982	320675;320676;320677	431741;431742	431742	218		1	
VAGMLQSFQGK	1	Unmodified	1164.5961	0.59612879	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	1	2	1	50.077	47.448	2	1.4739E-07	39582	160511_QHF_FH_JSI10i_3	123.86	123.86			0.97965	1.0785	16.566	5	0	Median	1.4415	1.1437	NaN	1	0	Median	0.97965	1.1456	NaN	1	0	Median	0.95799	0.92764	21.313	2	0	Median	0.85159	0.87921	NaN	1	0	Median	1477900000	778710000	699210000	164180000	65987000	98191000	224650000	114950000	109710000	501640000	255790000	245850000	587450000	341990000	245460000	53069	1306	49983	320678;320679;320680;320681;320682	431743;431744;431745;431746;431747;431748;431749;431750;431751;431752	431744			10	
VAGMLQSFQGK	1	Oxidation (M)	1180.591	0.59104341	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	30.005	29.94	2	0.0030741	25172	160511_QHF_FH_JSI12i_3	59.153	51.673			0.9836	1.038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9836	1.038	NaN	1	0	Median	21661000	12593000	9068600	0	0	0	0	0	0	0	0	0	21661000	12593000	9068600	53070	1306	49983	320683;320684	431753;431754;431755	431754		962	3	
VAGNFHFAPGK	1	Unmodified	1143.5825	0.58252764	5501	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	2	2	2	34.319	33.542	2;3	1.2264E-07	27530	160511_QHF_FH_JSI9i_3	97.456	97.456			0.92497	0.9136	13.418	9	1	Median	1.1643	0.94037	22.491	3	1	Plateau	0.75989	0.88217	8.6939	2	0	Median	1.0046	0.93893	6.6012	2	0	Median	0.91434	0.91684	3.3203	2	0	Median	4296500000	2231500000	2064900000	844440000	395480000	448960000	922620000	512890000	409730000	1095300000	558970000	536340000	1434100000	764170000	669910000	53071	5501	49984	320685;320686;320687;320688;320689;320690;320691;320692;320693	431756;431757;431758;431759;431760;431761;431762;431763;431764;431765;431766;431767;431768;431769;431770;431771;431772;431773;431774;431775	431766			20	
VAGNFHITVGK	1	Unmodified	1141.6244	0.62439245	4222	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	41.368	37.748	2;3	3.7724E-05	32792	160511_QHF_FH_JSI11i_3	72.958	68.258			1.072	0.98339	22.46	12	0	Median	1.193	0.95198	10.4	3	0	Median	0.69393	0.80526	20.638	3	0	Median	1.1386	1.0478	6.2413	3	0	Plateau	1.4365	1.4684	22.57	3	0	Plateau	836100000	444310000	391790000	187400000	89548000	97851000	150940000	94373000	56569000	181630000	92163000	89463000	316130000	168220000	147910000	53072	4222	49985	320694;320695;320696;320697;320698;320699;320700;320701;320702;320703;320704;320705	431776;431777;431778;431779;431780;431781;431782;431783;431784;431785;431786	431776			11	
VAGPNGYAILLAVPGSSDSR	0	Unmodified	1943.0112	0.011239973	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		85.332	74.815	2	6.9032E-07	39414	160513_QHF_FH_JSI11Kac_5	84.468	57.331			0.95198	0.90939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95198	0.90939	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2634400	1376600	1257800	0	0	0	0	0	0	2634400	1376600	1257800	0	0	0	53073	4254	49986	320706	431787	431787			0	
VAGQDGSVVQFK	1	Unmodified	1233.6354	0.63535107	1968;1866	P61956;Q6EEV6;P55854	SUMO2;SUMO4;SUMO3	Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	3.92	10	8	3			2	1			5	7	6	6	37.435	35.436	2;3	2.4299E-07	31973	160511_QHF_FH_JSI12i_1	130.94	104.56			0.98428	0.97849	17.691	22	1	Median	1.0231	0.84772	24.321	5	0	Median	0.80371	0.96406	10.069	6	0	Median	1.0198	1.0271	9.0923	5	0	Median	0.97852	1.0441	22.289	6	1	Median	15014000000	7516800000	7496900000	2805000000	1263400000	1541600000	4081500000	2289800000	1791700000	4844000000	2256900000	2587200000	3283200000	1706800000	1576400000	53074	1968;1866	49987	320707;320708;320709;320710;320711;320712;320713;320714;320715;320716;320717;320718;320719;320720;320721;320722;320723;320724;320725;320726;320727;320728;320729;320730	431788;431789;431790;431791;431792;431793;431794;431795;431796;431797;431798;431799;431800;431801;431802;431803;431804;431805;431806;431807;431808;431809;431810;431811;431812;431813;431814;431815;431816;431817;431818;431819	431797			32	
VAGQLLPLAYNLLK	1	Unmodified	1511.9076	0.90755017	5080	Q9NWY4	C4orf27	UPF0609 protein C4orf27	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			101.54	101.39	2	9.0506E-10	82284	160511_QHF_FH_JSI9i_3	105.2	42.933			0.80193	0.96771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80193	0.96771	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89616000	57715000	31901000	0	0	0	89616000	57715000	31901000	0	0	0	0	0	0	53075	5080	49988	320731;320732;320733	431820;431821;431822	431822			3	
VAGSPGWVR	0	Unmodified	927.49265	0.49265	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	27.71	26.988	2	0.00089301	23579	160511_QHF_FH_JSI10i_2	72.138	25.768			0.92986	0.88603	17.596	7	0	Median	0.92135	0.77067	5.2823	2	0	Median	0.82706	0.98744	15.326	2	0	Median	0.87535	0.84405	7.957	2	0	Median	1.1703	1.1936	NaN	1	0	Median	1341900000	711750000	630130000	270640000	157460000	113180000	302370000	166770000	135600000	350650000	186010000	164640000	418230000	201510000	216710000	53076	895	49989	320734;320735;320736;320737;320738;320739;320740	431823;431824;431825;431826;431827;431828;431829;431830;431831	431829			9	
VAGTGEGGLEEMVEELNSGK	1	Unmodified	2004.931	0.93100032	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	89.287	88.797	2	4.0529E-09	78245	160511_QHF_FH_JSI9i_2	115.82	100.78			0.83745	0.92055	28.208	4	3	Median	1.5605	1.3521	NaN	1	1	Median	0.77602	0.91856	NaN	1	1	Median	0.90373	0.92255	NaN	1	0	Median	0.65057	0.67916	NaN	1	1	Median	109710000	56032000	53681000	19446000	4940400	14506000	45706000	26110000	19597000	27947000	14733000	13213000	16613000	10249000	6364600	53077	5346	49990	320741;320742;320743;320744	431832;431833;431834;431835;431836	431834			5	
VAGVLGFAATHNLYSMNDCAQK	1	Unmodified	2366.1147	0.11473554	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		74.653	74.653	3	9.9743E-07	66644	160511_QHF_FH_JSI11i_3	85.855	77.255			0.77741	0.7098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77741	0.7098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51712000	28410000	23302000	0	0	0	0	0	0	51712000	28410000	23302000	0	0	0	53078	4157	49991	320745	431837	431837			0	
VAGVVAPTLPR	0	Unmodified	1078.6499	0.64987892	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	1.33	0.471	2	1								1		1	1	51.61	50.902	2	0.0066218	44630	160511_QHF_FH_JSI9i_2	51.949	39.361			1.4241	1.2775	14.288	3	0	Plateau	1.7032	1.439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1907	1.1341	NaN	1	0	Median	1.0768	1.1141	NaN	1	0	Median	108370000	40979000	67389000	49685000	16760000	32925000	0	0	0	39476000	15453000	24024000	19206000	8765600	10440000	53079	1579	49992	320746;320747;320748	431838	431838			1	
VAGVVAPTLPREDLEK	1	Unmodified	1692.941	0.94103514	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.15	0.662	2	7	4							3	3	4	3	57.556	56.946	2;3	1.1931E-05	48911	160511_QHF_FH_JSI12i_3	103.39	78.667			0.89815	0.94429	14.568	13	2	Median	1.1367	1.0073	9.3865	3	2	Median	0.8692	1.0691	15.112	3	0	Plateau	1.0159	0.9844	19.667	4	0	Median	0.86162	0.85989	13.406	3	0	Median	4336700000	2120200000	2216400000	898390000	409910000	488470000	658460000	352520000	305940000	1495400000	685230000	810140000	1284400000	672550000	611890000	53080	1579	49993	320749;320750;320751;320752;320753;320754;320755;320756;320757;320758;320759;320760;320761	431839;431840;431841;431842;431843;431844;431845;431846;431847;431848;431849;431850;431851;431852;431853;431854;431855;431856;431857;431858;431859;431860	431858			22	
VAGYAALLEQYQK	1	Unmodified	1452.7613	0.76127986	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.41	0.691	2	6	9							2	4	6	5	71.148	70.452	2;3	2.5033E-09	60935	160511_QHF_FH_JSI12i_3	105.98	89.837			1.0086	1.1167	21.242	14	5	Median	1.2661	1.0717	5.1535	2	1	Median	0.78095	1.0854	10.511	4	1	Linear	1.5086	1.4433	24.58	4	2	Median	0.67082	0.99998	23.231	4	1	Linear	937870000	484850000	453020000	78857000	30555000	48303000	211340000	113350000	97994000	288470000	127960000	160510000	359200000	212990000	146210000	53081	1838	49994	320762;320763;320764;320765;320766;320767;320768;320769;320770;320771;320772;320773;320774;320775;320776;320777;320778	431861;431862;431863;431864;431865;431866;431867;431868;431869;431870;431871;431872;431873;431874;431875;431876;431877;431878;431879;431880;431881;431882;431883;431884;431885	431885			25	
VAHALAEGLGVIACIGEK	1	Unmodified	1806.9662	0.96620404	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.31	2.57		5	20						1	5	6	7	8	82.621	81.739	2;3;4	2.9124E-61	70984	160511_QHF_FH_JSI12i_3	190.27	168.07			0.83319	0.83311	43.725	22	8	Median	0.95841	0.82129	33.428	5	3	Median	0.79007	0.90136	16.114	6	2	Median	0.86636	0.83449	65.965	4	1	Median	0.77401	0.83151	57.477	7	2	Median	3898500000	1765900000	2132600000	242180000	115340000	126840000	748950000	428340000	320610000	973840000	424740000	549110000	1933500000	797480000	1136000000	53082	1908	49995	320779;320780;320781;320782;320783;320784;320785;320786;320787;320788;320789;320790;320791;320792;320793;320794;320795;320796;320797;320798;320799;320800;320801;320802;320803;320804	431886;431887;431888;431889;431890;431891;431892;431893;431894;431895;431896;431897;431898;431899;431900;431901;431902;431903;431904;431905;431906;431907;431908;431909;431910;431911;431912;431913;431914;431915;431916;431917;431918;431919;431920;431921;431922;431923;431924;431925;431926;431927;431928;431929;431930	431929			44	
VAHFLEK	1	Unmodified	842.46504	0.46503826	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.479		5	9							4	3	3	4	18.725	18.221	2;3	0.0025528	14550	160511_QHF_FH_JSI12i_3	77.058	45.768			0.87953	0.95109	67.895	14	12	Median	1.0133	0.87504	81.858	4	4	Median	0.83697	0.95219	70.369	3	2	Median	0.92425	0.94999	77.113	3	2	Median	0.85718	0.87577	76.298	4	4	Median	5822700000	3206300000	2616400000	795410000	364490000	430920000	688070000	420610000	267460000	1415300000	841850000	573450000	2923900000	1579400000	1344600000	53083	1438	49996	320805;320806;320807;320808;320809;320810;320811;320812;320813;320814;320815;320816;320817;320818	431931;431932;431933;431934;431935;431936;431937;431938;431939;431940;431941;431942;431943;431944;431945;431946;431947	431944			17	
VAHFLEKQGFK	2	Acetyl (K)	1344.719	0.71902112	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	56.221	46.757	2;3	0.0002272	25269	160513_QHF_FH_JSI11Kac_6	83.081	67.495			0.28587	0.27078	58.683	4	0	Median	NaN	NaN	NaN	0	0	Median	0.11591	0.13708	NaN	1	0	Median	0.28587	0.27078	19.443	2	0	Median	0.50806	0.56172	NaN	1	0	Median	124440000	101880000	22564000	0	0	0	16880000	15386000	1494000	93605000	78346000	15259000	13956000	8144900	5811300	53084	1438	49997	320819;320820;320821;320822	431948;431949;431950;431951;431952	431948	1421		5	
VAHILNISPPLNLNPVWFK	1	Unmodified	2171.2255	0.22553027	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	96.993	92.779	3	3.2515E-33	83844	160511_QHF_FH_JSI10i_3	192.24	179.21			1.0115	1.0158	6.4613	8	0	Median	1.1669	0.96988	5.8819	2	0	Median	0.83828	0.9842	8.1182	2	0	Median	1.0753	1.0216	10.005	2	0	Median	0.99398	1.0491	3.9141	2	0	Median	7564000000	3687300000	3876700000	1211100000	526750000	684340000	2229500000	1217100000	1012400000	1629000000	719470000	909570000	2494400000	1223900000	1270400000	53085	3175	49998	320823;320824;320825;320826;320827;320828;320829;320830	431953;431954;431955;431956;431957;431958;431959;431960;431961;431962;431963;431964;431965;431966;431967;431968	431956			16	
VAHLALK	1	Unmodified	750.47521	0.47520902	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	17.56	16.832	2	0.033612	13122	160511_QHF_FH_JSI12i_3	50.539	7.4924			0.97916	1.0148	30.245	3	0	Median	2.1138	1.7017	NaN	1	0	Median	0.89733	1.0148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97916	1.0011	NaN	1	0	Median	619810000	297920000	321890000	176280000	51247000	125030000	144540000	80990000	63549000	0	0	0	298990000	165680000	133310000	53086	1842	49999	320831;320832;320833	431969;431970;431971	431970			3	
VAHLALKHR	1	Acetyl (K)	1085.6458	0.6457966	1842	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		26.555	17.443	3	0.0596	10562	160513_QHF_FH_JSI11Kac_6	30.797	23.737			0.22368	0.22541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22368	0.22541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4649200	3674400	974760	0	0	0	0	0	0	4649200	3674400	974760	0	0	0	53087	1842	50000	320834	431972	431972			0	
VAHLNFWGWR	0	Unmodified	1284.6516	0.65161026	3981	Q96B77	TMEM186	Transmembrane protein 186	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									5	1	2	1	1	76.191	68.169	2;3	9.9162E-06	35611	160513_QHF_FH_JSI12Kac_6	102.62	88.269			0.97229	1.0167	17.281	5	1	Median	1.3539	1.1495	NaN	1	0	Median	0.75411	0.90557	2.6202	2	1	Median	1.3983	1.3571	NaN	1	0	Median	0.97229	1.0167	NaN	1	0	Median	443730000	250970000	192760000	43044000	16943000	26100000	345960000	204780000	141180000	21675000	12241000	9433500	33054000	17001000	16053000	53088	3981	50001	320835;320836;320837;320838;320839	431973;431974;431975	431973			2	
VAHNILSGASWVSWGLVK	1	Unmodified	1923.0367	0.036666863	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	3	3	3	2	90.273	85.401	2;3	2.7202E-35	43187	160513_QHF_FH_JSI11Kac_6	209.41	188.75			1.0202	0.99062	33.381	10	1	Median	1.2306	0.96432	4.9785	3	0	Plateau	0.45727	0.53414	56.856	2	1	Median	1.0708	1.0176	13.578	3	0	Median	0.82972	0.85768	25.996	2	0	Median	2235000000	1136800000	1098200000	540310000	238720000	301590000	777700000	484070000	293630000	448250000	185670000	262570000	468780000	228370000	240420000	53089	3494	50002	320840;320841;320842;320843;320844;320845;320846;320847;320848;320849;320850	431976;431977;431978;431979;431980;431981;431982;431983;431984;431985;431986;431987;431988;431989;431990;431991;431992;431993	431981			18	
VAHSDKPGSTSTASFR	1	Unmodified	1646.8012	0.8012472	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	2	1		11.965	11.336	2;3;4	0.00058798	8888	160511_QHF_FH_JSI9i_3	55.186	44.142			0.85517	0.81425	10.473	6	0	Median	1.019	0.83513	10.411	3	0	Median	0.70859	0.81477	17.802	2	0	Median	0.85357	0.79389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1028600000	471820000	556790000	713480000	321420000	392060000	287520000	134210000	153310000	27605000	16194000	11411000	0	0	0	53090	5185	50003	320851;320852;320853;320854;320855;320856	431994;431995;431996;431997;431998;431999;432000;432001;432002;432003;432004	432004			11	
VAHSDKPGSTSTASFR	1	Acetyl (K)	1688.8118	0.81181188	5185	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		30.514	21.841	3	0.0023149	12644	160513_QHF_FH_JSI10Kac_6	52.862	34.724			0.58459	0.62477	88.98	2	0	Median	NaN	NaN	NaN	0	0	Median	0.99897	1.1721	NaN	1	0	Median	0.3421	0.33302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19002000	12998000	6003600	0	0	0	4261500	1771600	2489900	14740000	11226000	3513700	0	0	0	53091	5185	50003	320857;320858	432005;432006;432007	432007	3330		3	
VAHSFNCTPIEGMLSHQLK	1	Unmodified	2168.0507	0.050678722	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	5.84		2	9						4	3	6	3	3	67.978	64.995	3;4	6.7759E-33	57501	160511_QHF_FH_JSI11i_3	186.56	179.61			1.0579	1.1131	23.475	15	2	Median	1.3168	1.0724	11.593	3	0	Plateau	1.0477	1.2092	33.552	6	2	Median	0.92153	0.86712	11.73	3	0	Plateau	1.0283	1.0147	10.461	3	0	Plateau	5769800000	2905300000	2864500000	451550000	184120000	267430000	1176700000	563110000	613600000	2270400000	1263500000	1007000000	1871100000	894580000	976550000	53092	5475	50004	320859;320860;320861;320862;320863;320864;320865;320866;320867;320868;320869;320870;320871;320872;320873	432008;432009;432010;432011;432012;432013;432014;432015;432016;432017;432018;432019;432020;432021;432022;432023;432024;432025;432026;432027;432028;432029;432030;432031;432032;432033;432034;432035;432036;432037;432038	432013			29	
VAHSFNCTPIEGMLSHQLK	1	Oxidation (M)	2184.0456	0.045593344	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			50.854	49.287	4	9.7787E-05	41204	160511_QHF_FH_JSI10i_3	73.138	69.418			0.99708	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99708	1.1454	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72183000	33628000	38555000	0	0	0	72183000	33628000	38555000	0	0	0	0	0	0	53093	5475	50004	320874	432039	432039		2676	1	
VAIAALEVLEEENLAENADK	1	Unmodified	2140.0899	0.089943804	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			100.78	100.7	3	1.5369E-08	89205	160511_QHF_FH_JSI10i_2	101.28	91.178			0.36328	0.37227	8.3024	2	0	Median	0.45927	0.39478	NaN	1	0	Median	0.28735	0.35104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107300000	75150000	32153000	55842000	38420000	17421000	51461000	36730000	14731000	0	0	0	0	0	0	53094	808	50005	320875;320876	432040	432040			1	
VAIDASMSIYQFLIAVR	0	Oxidation (M)	1912.0128	0.012819878	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				96.695	87.628	3	7.6695E-17	49963	160513_QHF_FH_JSI9Kac_6	137.21	121.32			0.90969	0.7946	NaN	1	0	Median	0.90969	0.7946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81527000	38176000	43350000	81527000	38176000	43350000	0	0	0	0	0	0	0	0	0	53095	1488	50006	320877	432041	432041		1171	1	
VAIDASMSIYQFLIAVR	0	Unmodified	1896.0179	0.017905256	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				107.51	98.266	3	0.04554	56645	160513_QHF_FH_JSI9Kac_6	33.547	22.913			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53096	1488	50006	320878	432042	432042			1	
VAIDVGYR	0	Unmodified	891.48142	0.48141661	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.13		4	2				2	3		1	4	4	2	45.799	40.021	2	0.00083418	34633	160511_QHF_FH_JSI11i_2	97.602	74.583			0.92105	1.0217	17.37	10	1	Median	1.1489	0.9897	NaN	1	0	Median	0.96688	1.1414	20.144	4	1	Median	0.93377	0.92608	9.5993	3	0	Median	0.8655	0.96238	0.55504	2	0	Median	1924600000	899690000	1024900000	355260000	139430000	215840000	561470000	273640000	287840000	534340000	246950000	287390000	473490000	239680000	233820000	53097	1067	50007	320879;320880;320881;320882;320883;320884;320885;320886;320887;320888;320889	432043;432044;432045;432046;432047;432048;432049;432050;432051;432052	432050			10	
VAIEHLDK	1	Unmodified	923.50763	0.50763136	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.59	3	13	2					3		4	6	6	5	22.97	21.053	2;3	0.0013084	17379	160511_QHF_FH_JSI12i_2	65.305	35.051			0.79685	0.88132	48.538	21	10	Median	0.90105	0.74695	42.793	4	3	Median	0.69999	0.83757	24.179	6	1	Median	0.7779	0.76464	68.754	6	4	Median	0.95071	1.074	42.718	5	2	Median	7767800000	4202200000	3565600000	1206800000	617140000	589700000	1738800000	1011700000	727100000	3176000000	1772300000	1403700000	1646200000	801120000	845060000	53098	1630	50008	320890;320891;320892;320893;320894;320895;320896;320897;320898;320899;320900;320901;320902;320903;320904;320905;320906;320907;320908;320909;320910	432053;432054;432055;432056;432057;432058;432059;432060;432061;432062;432063;432064;432065;432066;432067;432068;432069;432070;432071;432072	432053			20	
VAIEPGAPR	0	Unmodified	908.50797	0.50796571	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	1	3	2	26.953	25.109	2	0.0007018	22039	160511_QHF_FH_JSI10i_1	75.738	38.718			0.83168	0.84568	9.9795	7	1	Median	1.1183	0.95084	NaN	1	0	Median	0.7305	0.84568	NaN	1	0	Median	0.94333	0.93601	12.087	3	1	Plateau	0.725	0.78868	3.5309	2	0	Median	1134500000	577020000	557530000	167800000	72278000	95525000	205930000	117580000	88344000	446980000	216220000	230760000	313840000	170940000	142900000	53099	2160	50009	320911;320912;320913;320914;320915;320916;320917	432073;432074;432075;432076;432077;432078;432079;432080;432081;432082	432078			10	
VAIEPGAPRENDEFCK	1	Unmodified	1830.857	0.85704752	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	40.327	40.225	3	0.00051584	34345	160511_QHF_FH_JSI12i_3	69.729	52.327			1.5655	1.5243	40.517	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2165	1.1446	NaN	1	1	Median	2.0146	2.03	NaN	1	1	Median	139980000	45208000	94774000	0	0	0	0	0	0	59303000	23891000	35411000	80679000	21317000	59362000	53100	2160	50010	320918;320919	432083;432084	432084			2	
VAIFIEK	1	Unmodified	818.49019	0.49019038	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.246	50.854	2	0.031469	43434	160511_QHF_FH_JSI12i_2	53.351	5.4358			3.6326	4.0732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6326	4.0732	NaN	1	1	Median	499090000	46706000	452380000	0	0	0	0	0	0	0	0	0	499090000	46706000	452380000	53101	5200	50011	320920	432085	432085			1	
VAIFTLINEINK	1	Unmodified	1373.7919	0.79185171	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			4							2	1		1	101.1	100.96	2	7.2848E-11	87599	160511_QHF_FH_JSI12i_3	147.95	110.6			0.53402	0.57602	48.777	4	2	Median	0.66476	0.54154	79.667	2	2	Median	0.4122	0.47445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69185	0.69934	NaN	1	0	Median	221470000	142490000	78978000	84397000	53092000	31305000	51669000	34111000	17558000	0	0	0	85406000	55291000	30115000	53102	5461	50012	320921;320922;320923;320924	432086;432087;432088	432088			3	
VAIFTLINEINKK	2	Unmodified	1501.8868	0.88681473	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	1	2	4	2	88.298	82.628	3	1.1186E-06	41461	160513_QHF_FH_JSI12Kac_6	107.53	79.857			0.74528	0.74244	27.664	6	6	Median	1.0173	0.87222	NaN	1	1	Median	0.46595	0.54179	40.931	2	2	Median	0.82683	0.77726	8.8403	2	2	Median	0.7242	0.75493	NaN	1	1	Median	361130000	191190000	169940000	70422000	32710000	37712000	118350000	67916000	50429000	136900000	70647000	66256000	35461000	19920000	15541000	53103	5461	50013	320925;320926;320927;320928;320929;320930;320931;320932;320933	432089;432090;432091;432092;432093;432094;432095;432096;432097	432095			9	
VAIHEAMEQQTISIAK	1	Unmodified	1767.9189	0.91891949	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	4	4	52.066	51.263	2;3	3.684E-23	43850	160511_QHF_FH_JSI12i_3	140.49	133.9			0.7758	0.84889	26.431	9	2	Median	1.0567	0.90541	NaN	1	0	Median	0.53373	0.67302	4.7761	2	1	Median	0.70962	0.71842	23.599	2	0	Median	0.87968	0.95327	24.947	4	1	Median	668740000	357050000	311690000	86898000	36107000	50791000	122660000	78880000	43776000	150240000	72276000	77961000	308950000	169790000	139160000	53104	1410	50014	320934;320935;320936;320937;320938;320939;320940;320941;320942;320943;320944	432098;432099;432100;432101;432102;432103;432104;432105;432106;432107;432108	432108			11	
VAIHGWSYGGFLSLMGLIHK	1	Unmodified	2185.1507	0.15065076	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	94.941	86.547	4	7.1966E-14	50709	160513_QHF_FH_JSI10Kac_6	128.26	119.77			0.66434	0.99345	42.492	4	0	Linear	0.78267	0.67671	NaN	1	0	Median	0.73646	0.86724	NaN	1	0	Median	1.2189	1.138	NaN	1	0	Median	1.7515	1.8251	NaN	1	0	Median	315570000	153050000	162520000	85254000	32783000	52471000	132070000	78796000	53278000	62619000	29163000	33457000	35627000	12311000	23316000	53105	3308	50015	320945;320946;320947;320948	432109;432110;432111;432112	432111			4	
VAIHGWSYGGFLSLMGLIHKPQVFK	2	Unmodified	2784.4938	0.49378298	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.798	85.424	4;5	7.5459E-28	49633	160513_QHF_FH_JSI10Kac_6	145.58	132.65			0.88505	0.83017	37.26	4	0	Median	0.78989	0.67338	NaN	1	0	Median	0.63053	0.72274	NaN	1	0	Median	0.99168	0.95357	NaN	1	0	Median	1.446	1.5313	NaN	1	0	Median	707960000	352260000	355710000	156440000	84075000	72365000	111590000	78072000	33522000	261200000	127700000	133500000	178720000	62406000	116320000	53106	3308	50016	320949;320950;320951;320952	432113;432114;432115;432116;432117;432118	432118			6	
VAIHYINPPNPAK	1	Unmodified	1432.7827	0.78268401	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	1	3	5	4	48.59	44.625	2;3	1.3069E-09	39365	160511_QHF_FH_JSI11i_3	110.87	92.126			1.045	1.0427	27.47	10	3	Median	1.1791	0.95699	NaN	1	0	Median	1.001	1.1851	19.593	2	0	Median	1.0769	1.0538	45.178	3	1	Median	0.93569	0.99959	18.67	4	2	Median	1809100000	950200000	858930000	15462000	9207700	6254400	311760000	189380000	122390000	537940000	257840000	280100000	943970000	493780000	450190000	53107	2092	50017	320953;320954;320955;320956;320957;320958;320959;320960;320961;320962;320963;320964;320965	432119;432120;432121;432122;432123;432124;432125;432126;432127;432128;432129;432130;432131;432132;432133;432134;432135	432124			17	
VAIIEELVVGYETSLK	1	Unmodified	1761.9764	0.9764176	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.25	102.14	2	0.0056443	89914	160511_QHF_FH_JSI11i_2	60.301	46.492			0.83749	0.84079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83749	0.84079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33920000	21196000	12724000	0	0	0	0	0	0	33920000	21196000	12724000	0	0	0	53108	4518	50018	320966	432136	432136			1	
VAILAEK	1	Unmodified	742.45889	0.45889025	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0				By MS/MS	1	0	1												1	29.988	29.42	2	0.04193	26442	160511_QHF_FH_JSI12i_1	46.426	12.687			1.0783	1.1367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0783	1.1367	NaN	1	0	Median	48944000	26789000	22155000	0	0	0	0	0	0	0	0	0	48944000	26789000	22155000	53109	726;635	50019	320967	432137	432137			1	
VAILAELDK	1	Unmodified	970.5699	0.56989727	4973	Q9NRY2	INIP	SOSS complex subunit C	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	64.668	63.766	2	0.01177	54907	160511_QHF_FH_JSI12i_2	48.423	19.274			0.90682	0.89304	9.5587	4	0	Median	1.0553	0.92674	NaN	1	0	Median	0.69218	0.83355	NaN	1	0	Median	1.0108	1.0338	NaN	1	0	Median	0.81354	0.86058	NaN	1	0	Median	71832000	34678000	37154000	12629000	4677700	7951200	14975000	8564000	6410800	20721000	9682400	11039000	23507000	11754000	11753000	53110	4973	50020	320968;320969;320970;320971	432138	432138			1	
VAILAQLYHEK	1	Unmodified	1283.7238	0.72377215	4068	Q96F63	CCDC97	Coiled-coil domain-containing protein 97	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	3	2	1	64.533	59.677	2;3	1.2781E-05	52596	160511_QHF_FH_JSI11i_3	91.937	67.646			1.4364	1.4241	46.674	6	3	Median	1.2655	1.0574	45.605	2	1	Median	1.6488	1.9577	48.507	2	1	Median	1.5138	1.4761	51.546	2	1	Median	NaN	NaN	NaN	0	0	Median	251140000	102520000	148620000	75096000	29639000	45457000	76671000	29444000	47227000	99373000	43436000	55937000	0	0	0	53111	4068	50021	320972;320973;320974;320975;320976;320977;320978;320979	432139;432140;432141;432142;432143;432144;432145;432146;432147;432148;432149	432139			11	
VAILIPFR	0	Unmodified	927.59057	0.59057313	317	O43286	B4GALT5	Beta-1,4-galactosyltransferase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.39		4	4					2	3	4	3	3	3	81.95	77.783	2	6.4823E-05	70935	160511_QHF_FH_JSI11i_2	133.99	0			1.0923	1.1006	12.906	13	0	Median	1.3494	1.1462	11.517	4	0	Median	0.98514	1.1741	15.423	3	0	Median	1.1474	1.0811	10.362	3	0	Plateau	1.1789	1.2204	18.182	3	0	Plateau	1688700000	786600000	902120000	545910000	236560000	309350000	155230000	86196000	69036000	586220000	270230000	316000000	401350000	193620000	207740000	53112	317	50022	320980;320981;320982;320983;320984;320985;320986;320987;320988;320989;320990;320991;320992	432150;432151;432152;432153;432154;432155;432156;432157;432158;432159;432160;432161;432162;432163;432164;432165;432166;432167;432168	432161			19	
VAIPEVK	1	Unmodified	754.45889	0.45889025	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	38.832	38.409	2	0.035999	34537	160511_QHF_FH_JSI11i_1	49.358	25.386			0.72868	0.68725	68.248	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94709	1.1107	NaN	1	0	Median	0.72868	0.68725	NaN	1	0	Median	2.5421	2.642	NaN	1	0	Median	153930000	81376000	72558000	0	0	0	52200000	32272000	19928000	66435000	38930000	27505000	35298000	10174000	25124000	53113	4714	50023	320993;320994;320995	432169	432169			1	
VAIQLNDTHPALSIPELMR	0	Unmodified	2117.1303	0.13030925	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	91.664	91.65	3	3.1411E-06	81843	160511_QHF_FH_JSI11i_3	93.371	13.055			1.1883	1.2213	12.542	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.215	1.149	17.022	2	2	Median	1.1883	1.2213	NaN	1	1	Median	180650000	84778000	95873000	0	0	0	0	0	0	115330000	56347000	58979000	65324000	28431000	36893000	53114	992	50024	320996;320997;320998	432170;432171;432172	432171			3	
VAIQPVNDHAPVQTISR	0	Unmodified	1843.9904	0.99044495	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	6	5.2			3					1		1	1	1	1	48.73	45.626	3	6.1272E-07	40475	160511_QHF_FH_JSI11i_3	118.48	108.73			1.0852	1.1401	21.503	4	2	Median	1.8715	1.5522	NaN	1	1	Median	0.96993	1.1371	NaN	1	1	Median	1.2142	1.1432	NaN	1	0	Median	0.90607	0.9206	NaN	1	0	Median	434340000	212600000	221740000	3020700	587370	2433300	25644000	9534600	16109000	227510000	109530000	117980000	178170000	92947000	85219000	53115	3146	50025	320999;321000;321001;321002	432173;432174;432175;432176	432174			4	
VAISAIYMDLEAFLQR	0	Unmodified	1838.9601	0.96005603	3310	Q86TP1	PRUNE	Protein prune homolog	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.092	89.958	3	3.5677E-05	51829	160513_QHF_FH_JSI9Kac_6	89.624	78.184			0.86719	0.73212	NaN	1	0	Median	0.86719	0.73212	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32112000	16909000	15203000	32112000	16909000	15203000	0	0	0	0	0	0	0	0	0	53116	3310	50026	321003	432177	432177			1	
VAISLGFLGGAK	1	Unmodified	1131.6652	0.66519463	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	84.699	84.037	2	1.4433E-08	72929	160511_QHF_FH_JSI12i_3	140.75	88.899			1.0284	1.0163	8.9208	4	0	Median	1.2044	0.99601	NaN	1	0	Median	0.94981	1.0898	NaN	1	0	Median	1.1134	1.0369	NaN	1	0	Median	0.8733	0.8842	NaN	1	0	Median	229630000	114870000	114760000	28220000	11506000	16713000	36689000	19572000	17117000	45033000	22926000	22107000	119690000	60866000	58820000	53117	464	50027	321004;321005;321006;321007	432178;432179;432180;432181;432182	432181			5	
VAISNPPQR	0	Unmodified	980.54033	0.54032847	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	18.808	18.271	2	0.0023089	15615	160511_QHF_FH_JSI10i_1	65.252	33.963			0.99	1.0768	55.228	4	1	Median	3.0943	2.5307	NaN	1	0	Median	1.0134	1.1878	NaN	1	0	Median	0.96716	0.97623	NaN	1	0	Median	0.66469	0.68409	NaN	1	1	Median	404950000	183710000	221240000	72970000	29114000	43856000	146920000	73507000	73413000	113460000	45781000	67682000	71594000	35304000	36290000	53118	2604	50028	321008;321009;321010;321011;321012	432183;432184;432185;432186	432185			4	
VAIVKPGVPMEIVLNK	2	Unmodified	1706.0164	0.016448693	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.1	79.365	3	1.8622E-05	68824	160511_QHF_FH_JSI12i_3	81.428	63.939			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53119	5633	50029	321013;321014;321015;321016	432187;432188;432189;432190	432190			4	
VAIYSPDGVR	0	Unmodified	1075.5662	0.56620887	3635	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		40.36	39.535	2	0.0038719	33855	160511_QHF_FH_JSI11i_2	67.993	53.217			0.97269	0.85134	13.672	3	2	Median	1.0068	0.85134	NaN	1	1	Median	0.62656	0.75808	NaN	1	0	Median	0.97269	0.9955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	298030000	158740000	139290000	94491000	46656000	47835000	65315000	39232000	26083000	138220000	72854000	65368000	0	0	0	53120	3635	50030	321017;321018;321019	432191;432192;432193	432192			3	
VAKDSSR	1	Acetyl (K)	803.41373	0.41373097	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	5.7597	-1.5076	2	0.025446	1903	160513_QHF_FH_JSI10Kac_3	73.248	34.03			0.84408	0.97721	33.553	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90556	1.0781	NaN	1	0	Median	0.56225	0.55203	NaN	1	0	Median	0.73443	0.80404	NaN	1	0	Median	59492000	34048000	25444000	0	0	0	21551000	10776000	10775000	17073000	10594000	6479400	20868000	12678000	8190000	53121	5603	50031	321020;321021;321022	432194;432195;432196	432195	3495		3	
VAKPVVEMDGDEMTR	1	Unmodified	1675.7909	0.79094179	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	39.819	39.338	2;3	2.7788E-05	33638	160511_QHF_FH_JSI12i_3	115.8	103.66			0.96091	1.0386	24.678	5	1	Median	1.2347	1.0386	NaN	1	0	Median	0.89764	1.0829	NaN	1	0	Median	1.2584	1.1699	NaN	1	0	Median	0.75068	0.7853	32.111	2	1	Median	341920000	159940000	181990000	50205000	21997000	28208000	50767000	29497000	21270000	116330000	55722000	60606000	124620000	52721000	71902000	53122	1635	50032	321023;321024;321025;321026;321027;321028;321029	432197;432198;432199;432200;432201;432202;432203;432204;432205;432206	432205			10	
VALAGTFHYYSCER	0	Unmodified	1672.7668	0.76677595	2701	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	59.821	50.595	2;3	3.4241E-30	27809	160513_QHF_FH_JSI10Kac_6	169.58	154.61			1.1332	1.1063	18.224	6	0	Median	1.2818	1.1032	NaN	1	0	Median	0.89855	1.0721	4.8316	2	0	Median	1.1332	1.1055	6.9044	2	0	Median	1.568	1.6868	NaN	1	0	Median	385750000	203240000	182510000	52747000	24893000	27854000	187150000	96945000	90201000	116790000	69703000	47083000	29073000	11698000	17375000	53123	2701	50033	321030;321031;321032;321033;321034;321035;321036	432207;432208;432209;432210;432211;432212;432213;432214;432215;432216;432217;432218;432219	432218			13	
VALDLDPYVK	1	Unmodified	1131.6176	0.61757574	672	O95295	SNAPIN	SNARE-associated protein Snapin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	69.713	69.3	2	0.0027736	62915	160511_QHF_FH_JSI11i_1	57.859	50.291			0.73154	0.87056	16.667	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.73154	0.87056	NaN	1	0	Median	0.75676	0.70454	NaN	1	0	Median	0.92665	0.97887	NaN	1	0	Median	160690000	91080000	69607000	0	0	0	60150000	33321000	26829000	50313000	31205000	19109000	50225000	26554000	23670000	53124	672	50034	321037;321038;321039	432220;432221;432222	432220			3	
VALDMTTLTIMR	0	Unmodified	1363.7203	0.72034303	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	2	1	2	1	85.277	78.444	2	0.0029459	41601	160513_QHF_FH_JSI9Kac_6	65.5	30.276			1.0005	0.91125	9.0985	5	2	Median	1.1178	0.9338	3.4578	2	1	Median	0.7618	0.89484	NaN	1	0	Median	1.0005	0.97181	NaN	1	1	Median	0.735	0.77263	NaN	1	0	Median	476860000	240620000	236240000	184950000	92091000	92858000	171650000	89665000	81980000	99611000	47584000	52027000	20654000	11283000	9371800	53125	2006	50035	321040;321041;321042;321043;321044;321045	432223;432224;432225;432226;432227;432228;432229	432226			7	
VALEGLRPTIPPGISPHVCK	1	Unmodified	2140.1827	0.18267917	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			71.841	70.385	4	0.0074788	59050	160511_QHF_FH_JSI10i_3	36.523	26.735			0.73233	0.86132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73233	0.86132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17565000	10146000	7419600	0	0	0	17565000	10146000	7419600	0	0	0	0	0	0	53126	2403	50036	321046	432230	432230			1	
VALEIFQHSK	1	Unmodified	1170.6397	0.63970816	5128	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	4.77		2	9						2	3	3	3	4	52.417	49.981	2;3	5.7558E-08	44007	160511_QHF_FH_JSI10i_2	108.47	100.34			1.1491	1.0973	56.078	11	3	Median	1.235	1.0127	6.5484	2	0	Median	1.0233	1.1539	14.628	3	0	Plateau	1.1491	1.0973	85.069	3	1	Median	1.1705	1.2233	70.32	3	2	Median	1647200000	816960000	830220000	131690000	62452000	69238000	255480000	121820000	133660000	565070000	259780000	305280000	694950000	372910000	322040000	53127	5128	50037	321047;321048;321049;321050;321051;321052;321053;321054;321055;321056;321057;321058;321059	432231;432232;432233;432234;432235;432236;432237;432238;432239;432240;432241;432242;432243;432244;432245;432246;432247	432242			17	
VALENDDRSEEEK	1	Unmodified	1532.6954	0.69544472	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	1	By MS/MS			By MS/MS	1	0	2									1			1	14.445	14.016	2	0.0030385	11326	160511_QHF_FH_JSI9i_1	71.085	29.084			0.51474	0.51998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51474	0.51998	NaN	1	0	Median	27101000	12787000	14314000	0	0	0	0	0	0	0	0	0	27101000	12787000	14314000	53128	4302	50038	321060;321061	432248;432249	432249			2	
VALEPQLWELGK	1	Unmodified	1381.7606	0.76055158	3012	Q643R3	LPCAT4	Lysophospholipid acyltransferase LPCAT4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		86.122	85.539	2	0.016622	75227	160511_QHF_FH_JSI11i_2	50.284	39.76			1.0037	0.98247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0037	0.98247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10974000	5920000	5053700	0	0	0	0	0	0	10974000	5920000	5053700	0	0	0	53129	3012	50039	321062	432250	432250			1	
VALFYLLNPYTILSCVAK	1	Unmodified	2084.138	0.13802039	4712	Q9H490	PIGU	Phosphatidylinositol glycan anchor biosynthesis class U protein	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		101.14	91.72	3	0.036085	52678	160513_QHF_FH_JSI11Kac_6	32.858	23.694			0.42361	0.40531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42361	0.40531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	126140000	93352000	32787000	0	0	0	0	0	0	126140000	93352000	32787000	0	0	0	53130	4712	50040	321063	432251	432251			1	
VALGETQLVQEVR	0	Unmodified	1440.7936	0.79364262	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	71.337	60.676	2	0.02812	32856	160513_QHF_FH_JSI12Kac_4	43.512	18.658			0.86722	0.9527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86722	0.9527	NaN	1	0	Median	1418000	689270	728740	0	0	0	0	0	0	0	0	0	1418000	689270	728740	53131	5621	50041	321064	432252	432252			1	
VALGHGLK	1	Unmodified	793.48102	0.48102268	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	17.166	17.186	2	0.0028682	13738	160511_QHF_FH_JSI12i_3	76.847	26.727			0.57877	0.57347	16.505	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54211	0.5103	NaN	1	0	Median	0.6179	0.64446	NaN	1	0	Median	929630000	567070000	362570000	0	0	0	0	0	0	404780000	272130000	132650000	524860000	294940000	229920000	53132	2277	50042	321065;321066	432253	432253			1	
VALGNTWK	1	Unmodified	887.4865	0.48650199	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	37.406	36.633	2	0.021649	31248	160511_QHF_FH_JSI12i_3	44.692	30.028			0.99803	0.94883	17.145	4	0	Median	1.0888	0.87014	NaN	1	0	Median	0.92364	1.0346	NaN	1	0	Median	0.79458	0.76359	NaN	1	0	Median	1.0784	1.1174	NaN	1	0	Median	863290000	405510000	457780000	58645000	33203000	25443000	103410000	57720000	45691000	242450000	118580000	123870000	458790000	196010000	262780000	53133	679	50043	321067;321068;321069;321070	432254;432255;432256	432256			3	
VALHLDEEDK	1	Unmodified	1167.5772	0.57716749	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.21	6.08	5	7	4				2	6		5	5	7	7	34.532	31.023	2;3	7.5849E-06	26598	160511_QHF_FH_JSI11i_3	84.658	77.999			1.2688	1.2547	32.539	22	5	Median	1.4928	1.2471	48.375	3	1	Median	0.85107	1.0002	37.279	5	1	Median	1.5409	1.5426	10.457	7	1	Median	1.0875	1.1999	32.291	7	2	Median	3395500000	1713700000	1681800000	379460000	185060000	194410000	696140000	392410000	303740000	1462100000	703700000	758420000	857810000	432570000	425240000	53134	2757	50044	321071;321072;321073;321074;321075;321076;321077;321078;321079;321080;321081;321082;321083;321084;321085;321086;321087;321088;321089;321090;321091;321092;321093;321094	432257;432258;432259;432260;432261;432262;432263;432264;432265;432266;432267;432268;432269;432270;432271;432272;432273;432274;432275;432276;432277;432278;432279;432280;432281;432282;432283;432284;432285;432286;432287;432288;432289;432290	432259			34	
VALHSNVKWTFK	2	Unmodified	1428.7878	0.78776939	5782				yes	no	0	0	0	1		By MS/MS			16	0									1		1			75.319	68.948	3	0.036629	37563	160513_QHF_FH_JSI10Kac_6	32.062	10.505	+		0.74023	0.8509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74023	0.8509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110670000	50023000	60649000	0	0	0	110670000	50023000	60649000	0	0	0	0	0	0	53135	5782	50045	321095	432291	432291			1	
VALIGDAAHR	0	Unmodified	1021.5669	0.56687757	5550	Q9Y2Z9	COQ6	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	24.671	24.654	2;3	0.00012788	20447	160511_QHF_FH_JSI12i_3	59.067	49.853			0.9828	1.005	15.464	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2147	1.1171	NaN	1	0	Median	0.88393	0.90988	14.057	2	0	Median	206030000	101820000	104210000	0	0	0	0	0	0	69396000	34358000	35038000	136630000	67459000	69174000	53136	5550	50046	321096;321097;321098	432292;432293;432294;432295;432296	432296			5	
VALIGFPSVGK	1	Unmodified	1086.6437	0.64373091	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	2	2	4	76.572	75.773	2	6.4424E-05	65822	160511_QHF_FH_JSI12i_3	93.111	83.523			1.0709	1.0325	14.436	10	0	Median	1.1962	0.98711	3.7487	2	0	Median	0.92486	1.0973	5.9889	2	0	Median	0.98472	0.96145	15.893	2	0	Median	1.0599	1.1122	20.429	4	0	Median	753830000	358830000	395000000	109250000	47798000	61449000	107060000	56071000	50992000	212610000	98357000	114250000	324910000	156600000	168300000	53137	1843	50047	321099;321100;321101;321102;321103;321104;321105;321106;321107;321108	432297;432298;432299;432300;432301;432302;432303;432304;432305;432306;432307;432308;432309	432309			13	
VALIGSPVDLTYTYDHLGDSPK	1	Unmodified	2360.19	0.1899922	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.629	3	5	1							1	4	2	2	91.779	91.297	3	3.5704E-29	80226	160511_QHF_FH_JSI11i_2	176.46	160.87			0.97914	1.0556	5.6695	9	3	Median	1.2011	1.0104	NaN	1	0	Median	0.8652	1.055	5.7569	4	3	Median	1.0601	1.0511	9.09	2	0	Median	1.0449	1.1008	3.1881	2	0	Median	976630000	530110000	446510000	218050000	95717000	122330000	317510000	184300000	133210000	218270000	127250000	91021000	222800000	122840000	99954000	53138	1306	50048	321109;321110;321111;321112;321113;321114;321115;321116;321117	432310;432311;432312;432313;432314;432315;432316;432317;432318;432319;432320;432321;432322;432323;432324;432325	432323			16	
VALILQNVDLPN	0	Unmodified	1307.7449	0.74490152	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	95.54	95.24	2	7.7363E-05	86500	160511_QHF_FH_JSI12i_1	105.57	83.575			0.83302	0.91375	29.096	3	3	Plateau	0.83302	0.6697	NaN	1	1	Median	0.96033	1.149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67772	0.72668	NaN	1	1	Median	146200000	87758000	58441000	24665000	12669000	11996000	77501000	47995000	29506000	0	0	0	44033000	27094000	16939000	53139	2216	50049	321118;321119;321120	432326;432327;432328	432326			3	
VALLDVFR	0	Unmodified	931.5491	0.54910224	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	83.148	79.927	2	8.0319E-15	72605	160511_QHF_FH_JSI11i_2	173.93	157.01			1.0035	1.041	16.403	12	0	Median	1.3732	1.1256	12.71	3	0	Plateau	0.8478	1.0368	11.135	3	0	Plateau	1.0354	1.0015	14.703	3	0	Median	0.97261	0.99534	19.674	3	0	Median	2950200000	1444300000	1505800000	413930000	184890000	229040000	527520000	305030000	222490000	882520000	431640000	450880000	1126200000	522790000	603410000	53140	1254	50050	321121;321122;321123;321124;321125;321126;321127;321128;321129;321130;321131;321132	432329;432330;432331;432332;432333;432334;432335;432336;432337;432338;432339;432340;432341;432342;432343;432344;432345;432346;432347;432348;432349;432350;432351	432340			23	
VALLEDVNR	0	Unmodified	1027.5662	0.56620887	2420	Q13459	MYO9B	Unconventional myosin-IXb	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				38.777	37.73	2	0.032922	32731	160511_QHF_FH_JSI9i_2	39.542	13.806			1.2275	1.0094	NaN	1	0	Median	1.2275	1.0094	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	400900000	168930000	231960000	400900000	168930000	231960000	0	0	0	0	0	0	0	0	0	53141	2420	50051	321133	432352	432352			1	
VALLIGNMNYR	0	Unmodified	1262.6805	0.68052712	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		74.233	68.842	2	0.0099597	36787	160513_QHF_FH_JSI11Kac_6	72.547	44.149			0.87443	0.9336	0.50625	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80835	0.93694	NaN	1	0	Median	0.94592	0.93026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56835000	30839000	25995000	0	0	0	12755000	8520600	4234200	44080000	22319000	21761000	0	0	0	53142	5270	50052	321134;321135	432353;432354	432354			0	
VALLIGNMNYR	0	Oxidation (M)	1278.6754	0.67544174	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By matching	15.8	0.4								1	4	3	1		1	65.535	56.576	2	0.035948	31170	160513_QHF_FH_JSI10Kac_6	39.148	10.749			1.011	1.0796	14.447	4	2	Median	1.1854	1.0117	22.364	2	2	Median	1.0029	1.1518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94098	1.0119	NaN	1	0	Median	45429000	21539000	23890000	23998000	10554000	13444000	15341000	7569400	7771200	0	0	0	6090100	3415500	2674600	53143	5270	50052	321136;321137;321138;321139;321140	432355;432356;432357;432358	432358			4	
VALLLLEK	1	Unmodified	897.5899	0.58990443	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.62		4	2					2	3	3	2	3	3	76.438	71.711	2	0.0030848	63651	160511_QHF_FH_JSI12i_2	75.213	31.966			0.93595	0.90716	20.58	11	0	Median	1.0734	0.89942	29.664	3	0	Median	0.74465	0.89154	2.4572	2	0	Median	0.87241	0.88215	23.566	3	0	Median	0.93595	1.0555	6.7178	3	0	Plateau	451730000	252720000	199010000	88387000	43654000	44733000	71023000	42781000	28242000	160800000	91073000	69726000	131520000	75211000	56309000	53144	5640	50053	321141;321142;321143;321144;321145;321146;321147;321148;321149;321150;321151	432359;432360;432361;432362;432363;432364;432365;432366;432367;432368;432369;432370;432371;432372	432361			14	
VALLPAGGALQHSR	0	Unmodified	1388.7888	0.78883202	5630	Q9Y4H2	IRS2	Insulin receptor substrate 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			48.616	47.028	3	5.1813E-05	38536	160511_QHF_FH_JSI9i_3	88.075	71.938			1.0261	0.98126	16.274	2	1	Median	1.3846	1.1009	NaN	1	0	Median	0.76044	0.8746	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93166000	41066000	52099000	51698000	19435000	32263000	41468000	21631000	19837000	0	0	0	0	0	0	53145	5630	50054	321152;321153;321154	432373;432374;432375;432376	432376			4	
VALLPPVLK	1	Unmodified	948.63719	0.63718897	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		76.725	76.01	2	0.004072	67091	160511_QHF_FH_JSI9i_2	68.422	58.435			0.07233	0.074905	35.279	3	3	Plateau	0.050915	0.042003	NaN	1	1	Median	0.064376	0.079586	NaN	1	1	Median	0.07233	0.074905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1441900000	1364700000	77154000	394040000	376030000	18003000	429090000	406330000	22761000	618770000	582380000	36391000	0	0	0	53146	3003	50055	321155;321156;321157	432377;432378;432379	432377			3	
VALLSGGGSGHEPAHAGFIGK	1	Unmodified	1961.0119	0.011908675	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	0.287		1	10							4	2	4	1	48.044	47.102	2;3;4	8.3958E-29	38766	160511_QHF_FH_JSI9i_3	175.21	169.5			0.95308	0.90051	10.326	7	3	Median	1.2612	1.0156	17.384	2	1	Median	0.80381	0.9264	4.8417	2	0	Median	0.99461	0.937	5.617	2	1	Median	0.80205	0.82885	NaN	1	1	Median	3479900000	1607300000	1872700000	922800000	364780000	558020000	1026600000	510970000	515640000	1346000000	633380000	712580000	184570000	98126000	86448000	53147	2817	50056	321158;321159;321160;321161;321162;321163;321164;321165;321166;321167;321168	432380;432381;432382;432383;432384;432385;432386;432387;432388;432389;432390;432391;432392;432393;432394;432395;432396	432391			17	
VALNVSCANLLDK	1	Unmodified	1415.7442	0.74424959	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	2	2	1	68.483	67.945	2	0.00024508	61812	160511_QHF_FH_JSI12i_1	77.597	60.366			0.84731	0.85677	21.809	5	0	Median	NaN	NaN	NaN	0	0	Median	0.76984	0.92913	11.466	2	0	Median	0.80643	0.7764	1.9692	2	0	Median	1.2283	1.2991	NaN	1	0	Median	311350000	160000000	151350000	0	0	0	129730000	72381000	57345000	121880000	62833000	59048000	59743000	24782000	34961000	53148	479	50057	321169;321170;321171;321172;321173;321174;321175	432397;432398;432399;432400;432401;432402	432399			6	
VALQWMVK	1	Unmodified	973.54191	0.54190838	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	65.518	64.924	2	0.0062002	56119	160511_QHF_FH_JSI12i_3	63.306	43.529			0.96275	0.92786	4.1724	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79186	0.92786	NaN	1	0	Median	0.93457	0.88955	NaN	1	0	Median	0.96275	0.96697	NaN	1	0	Median	152790000	72526000	80265000	0	0	0	27971000	11858000	16113000	36288000	15601000	20687000	88532000	45067000	43465000	53149	3888	50058	321176;321177;321178	432403;432404	432404			2	
VALRGEDVPLTEQTVSQVLQSAK	1	Unmodified	2467.3282	0.32821702	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	88.202	87.643	3;4	4.5532E-38	78296	160511_QHF_FH_JSI11i_3	189.19	172.04			1.152	1.0145	25.968	8	0	Median	1.3112	1.0727	7.7544	2	0	Median	0.84939	0.97042	41.697	3	0	Plateau	1.2317	1.1882	22.482	2	0	Median	0.93946	0.9495	NaN	1	0	Median	2611300000	1378200000	1233100000	656320000	293430000	362890000	989370000	528780000	460590000	879930000	512300000	367640000	85647000	43648000	41998000	53150	1966	50059	321179;321180;321181;321182;321183;321184;321185;321186	432405;432406;432407;432408;432409;432410;432411;432412;432413;432414;432415;432416;432417;432418;432419;432420;432421;432422;432423;432424;432425;432426	432406			21	
VALRNDSYTLHK	1	Unmodified	1415.7521	0.75211216	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							3	2	2		26.353	25.403	3;4	0.0024141	20695	160511_QHF_FH_JSI9i_3	43.544	27.788			0.80673	0.76977	30.212	7	1	Median	0.94043	0.76018	51.138	3	1	Median	0.69134	0.78284	2.3811	2	0	Median	0.84347	0.79313	7.7973	2	0	Median	NaN	NaN	NaN	0	0	Median	1087200000	536880000	550320000	551340000	253630000	297710000	279590000	149160000	130430000	256280000	134090000	122180000	0	0	0	53151	1984	50060	321187;321188;321189;321190;321191;321192;321193	432427;432428;432429;432430;432431;432432;432433;432434;432435	432434			9	
VALRSDLDSLK	1	Unmodified	1215.6823	0.68230126	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	43.561	43.445	2	0.014683	37103	160511_QHF_FH_JSI12i_3	58.37	19.803			1.2418	1.2267	17.924	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.473	1.3925	NaN	1	0	Median	1.0469	1.0807	NaN	1	0	Median	63981000	24010000	39971000	0	0	0	0	0	0	22974000	9741300	13233000	41007000	14269000	26738000	53152	2817	50061	321194;321195	432436	432436			1	
VALSEPQPERR	0	Unmodified	1280.6837	0.68369824	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.38	0.484		5	3							2	4	2		21.678	20.885	2;3	5.595E-05	17060	160511_QHF_FH_JSI10i_3	79.693	62.751			1.0496	1.1041	17.409	8	3	Median	1.3256	1.1481	5.1032	2	1	Median	0.89165	1.0475	11.139	4	1	Median	1.3365	1.2982	35.856	2	1	Median	NaN	NaN	NaN	0	0	Median	742810000	354620000	388190000	194540000	85787000	108750000	357380000	186040000	171340000	190890000	82787000	108110000	0	0	0	53153	4521	50062	321196;321197;321198;321199;321200;321201;321202;321203	432437;432438;432439;432440;432441;432442;432443	432438			7	
VALSNMNVIDR	0	Unmodified	1230.6391	0.63905624	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			55.083	54.113	2	0.054527	47812	160511_QHF_FH_JSI10i_2	34.803	16.938			1.0073	1.0273	23.162	2	0	Median	1.4383	1.2101	NaN	1	0	Median	0.70546	0.87208	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71486000	32429000	39057000	40583000	16889000	23694000	30903000	15540000	15363000	0	0	0	0	0	0	53154	1862	50063	321204;321205	432444	432444			1	
VALSSETEVALAR	0	Unmodified	1344.7249	0.72489436	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	52.791	52.205	2	0.00011373	47046	160511_QHF_FH_JSI10i_1	105.86	77.465			1.397	1.2603	15.662	5	2	Median	1.4686	1.2603	NaN	1	0	Median	0.86896	1.0376	NaN	1	0	Median	1.5017	1.473	11.253	2	2	Median	1.1888	1.2278	NaN	1	0	Median	580520000	258630000	321880000	108460000	44666000	63799000	186260000	100640000	85628000	190190000	79950000	110240000	95599000	33379000	62220000	53155	1298	50064	321206;321207;321208;321209;321210	432445;432446;432447;432448;432449;432450;432451;432452	432450			8	
VALTGLTVAEYFR	0	Unmodified	1438.782	0.78201531	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.44	1	8	7						8	5	6	7	6	91.105	88.052	2;3	9.021E-53	82710	160511_QHF_FH_JSI11i_3	215.56	185.82			0.89596	0.96783	12.579	24	1	Median	1.2347	1.0358	6.0743	5	0	Median	0.79216	0.95873	9.8382	6	0	Median	0.89645	0.85472	15.588	7	1	Median	0.88904	0.97261	7.3797	6	0	Median	10603000000	5409000000	5193700000	1745700000	795140000	950600000	2518300000	1347200000	1171100000	3130800000	1628600000	1502200000	3207900000	1638000000	1569800000	53156	851	50065	321211;321212;321213;321214;321215;321216;321217;321218;321219;321220;321221;321222;321223;321224;321225;321226;321227;321228;321229;321230;321231;321232;321233;321234	432453;432454;432455;432456;432457;432458;432459;432460;432461;432462;432463;432464;432465;432466;432467;432468;432469;432470;432471;432472;432473;432474;432475;432476;432477;432478;432479;432480;432481;432482;432483;432484;432485;432486;432487;432488;432489;432490;432491;432492;432493;432494;432495;432496;432497;432498;432499	432456			47	
VALTGLTVAEYFRDQEGQDVLLFIDNIFR	0	Unmodified	3341.7296	0.72959239	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			102.75	99.806	4	2.22E-34	56259	160513_QHF_FH_JSI10Kac_6	140.04	118.42			1.1167	1.1228	0.53831	2	0	Median	1.3027	1.1186	NaN	1	0	Median	0.95718	1.1271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	869120000	482810000	386310000	6875300	3413400	3461800	862240000	479390000	382850000	0	0	0	0	0	0	53157	851	50066	321235;321236	432500;432501	432501			2	
VALVGLEAWTQR	0	Unmodified	1341.7405	0.74048484	2417	Q13444	ADAM15	Disintegrin and metalloproteinase domain-containing protein 15	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	80.978	80.865	2	0.0001869	70232	160511_QHF_FH_JSI12i_3	81.338	62.558			0.85317	0.85492	29.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76325	0.69298	NaN	1	0	Median	0.95369	1.0547	NaN	1	0	Median	118540000	63703000	54840000	0	0	0	0	0	0	47368000	26233000	21135000	71176000	37471000	33705000	53158	2417	50067	321237;321238	432502	432502			1	
VALVGPNGAGK	1	Unmodified	981.56073	0.56072956	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	28.727	28.343	2	0.0041395	25099	160511_QHF_FH_JSI11i_1	65.88	47.104			1.2584	1.2636	10.607	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2021	1.1723	NaN	1	1	Median	1.3174	1.362	NaN	1	1	Median	159830000	77556000	82278000	0	0	0	0	0	0	86468000	41356000	45112000	73365000	36200000	37166000	53159	5279	50068	321239;321240	432503;432504	432503			2	
VALVNDSLSDVTSTTSSR	0	Unmodified	1850.9222	0.92215019	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	4	2	2	61.855	61.265	2;3	1.4778E-159	55749	160511_QHF_FH_JSI12i_1	297.24	274.02			1.0851	1.0818	13.287	10	2	Median	1.2924	1.0601	7.3338	2	0	Median	0.91562	1.074	22.459	4	2	Median	1.1153	1.081	2.1399	2	0	Median	1.0593	1.0818	0.076893	2	0	Median	1318400000	680530000	637910000	226580000	104760000	121830000	466840000	266900000	199940000	324870000	146200000	178670000	300150000	162680000	137470000	53160	3250	50069	321241;321242;321243;321244;321245;321246;321247;321248;321249;321250	432505;432506;432507;432508;432509;432510;432511;432512;432513;432514;432515;432516	432508			10	
VALVTFNSAAHNK	1	Unmodified	1370.7306	0.73064844	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	4	1	43.101	39.256	2;3	6.0925E-06	21820	160513_QHF_FH_JSI10Kac_6	95.273	84.061			0.95087	0.92194	20.053	8	0	Median	1.0578	0.88386	10.049	2	0	Median	0.7651	0.89596	3.1996	2	0	Median	1.2553	1.2231	17.12	3	0	Median	0.67713	0.68627	NaN	1	0	Median	1147700000	524690000	622980000	61469000	29955000	31514000	89995000	50863000	39132000	668120000	289110000	379010000	328080000	154760000	173320000	53161	3343	50070	321251;321252;321253;321254;321255;321256;321257;321258;321259	432517;432518;432519;432520;432521;432522;432523;432524;432525;432526;432527	432526			9	
VALVTFNSAAHNKPSLIR	1	Unmodified	1937.0847	0.084679688	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	65.449	56.282	4	2.7856E-12	29811	160513_QHF_FH_JSI9Kac_6	130.39	120.98			0.92196	0.91562	3.1693	4	0	Median	1.0554	0.92015	NaN	1	0	Median	0.76648	0.91111	NaN	1	0	Median	0.99024	0.9696	NaN	1	0	Median	0.85838	0.90371	NaN	1	0	Median	305690000	168820000	136870000	82248000	36419000	45829000	161300000	97453000	63845000	41458000	23913000	17545000	20688000	11034000	9654400	53162	3343	50071	321260;321261;321262;321263	432528;432529;432530;432531;432532;432533;432534;432535	432531			8	
VALVTGANR	0	Unmodified	899.51886	0.51886475	572	O75828	CBR3	Carbonyl reductase [NADPH] 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		22.6	22.6	2	0.0098513	19112	160511_QHF_FH_JSI11i_3	51.059	27.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53163	572	50072	321264	432536	432536			1	
VALVVHPGTAR	0	Unmodified	1118.656	0.65602693	2313	Q12846	STX4	Syntaxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	3	2	2	32.555	28.381	2;3	8.2333E-05	23560	160511_QHF_FH_JSI10i_3	60.49	56.074			0.91901	0.99361	18.36	10	1	Median	1.3955	1.1305	11.995	3	0	Median	0.67374	0.77242	15.255	3	0	Plateau	1.1129	1.0719	30.047	2	0	Median	0.82706	0.90219	6.8859	2	1	Median	457560000	236460000	221100000	149860000	68658000	81206000	123000000	70860000	52140000	83147000	48287000	34860000	101550000	48653000	52895000	53164	2313	50073	321265;321266;321267;321268;321269;321270;321271;321272;321273;321274	432537;432538;432539;432540;432541;432542;432543;432544;432545;432546;432547	432538			11	
VALVYGQMNEPPGAR	0	Unmodified	1600.8032	0.80316145	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.93	6.41	9	10	12				7	15	4	15	19	12	11	59.649	54.288	2;3	2.6586E-81	49608	160511_QHF_FH_JSI12i_1	251.24	251.24			1.0084	1.0672	13.259	43	8	Median	1.2947	1.0856	8.9589	8	1	Median	0.89558	1.0722	13.06	14	6	Median	1.0639	1.0427	12.236	11	0	Median	0.98745	1.0709	18.133	10	1	Median	6589300000	3344800000	3244500000	1187000000	541760000	645260000	1518900000	821640000	697250000	2381200000	1232700000	1148600000	1502200000	748770000	753420000	53165	851	50074	321275;321276;321277;321278;321279;321280;321281;321282;321283;321284;321285;321286;321287;321288;321289;321290;321291;321292;321293;321294;321295;321296;321297;321298;321299;321300;321301;321302;321303;321304;321305;321306;321307;321308;321309;321310;321311;321312;321313;321314;321315;321316;321317;321318;321319;321320;321321;321322;321323;321324;321325;321326;321327;321328;321329;321330;321331	432548;432549;432550;432551;432552;432553;432554;432555;432556;432557;432558;432559;432560;432561;432562;432563;432564;432565;432566;432567;432568;432569;432570;432571;432572;432573;432574;432575;432576;432577;432578;432579;432580;432581;432582;432583;432584;432585;432586;432587;432588;432589;432590;432591;432592;432593;432594;432595;432596;432597;432598;432599;432600;432601;432602;432603;432604;432605;432606;432607;432608;432609;432610;432611;432612;432613;432614;432615;432616;432617;432618;432619;432620;432621;432622;432623;432624;432625;432626;432627;432628;432629;432630;432631;432632;432633;432634;432635;432636;432637;432638;432639;432640;432641;432642;432643;432644;432645;432646;432647;432648;432649;432650;432651;432652;432653;432654;432655;432656;432657;432658;432659;432660;432661;432662;432663;432664;432665;432666;432667;432668	432577			121	
VALVYGQMNEPPGAR	0	Oxidation (M)	1616.7981	0.79807608	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.18	5	11					11	19		9	8	15	14	50.862	43.267	2;3	1.3424E-10	23091	160513_QHF_FH_JSI9Kac_5	122.7	110.83			1.0036	1.0083	15.703	32	13	Median	1.2847	1.0857	25.281	4	1	Median	0.82474	0.97714	9.3392	5	2	Median	1.0337	1.0253	14.457	11	6	Median	0.93149	0.9896	15.255	12	4	Median	511460000	253760000	257690000	56407000	25023000	31384000	92597000	50154000	42443000	143540000	70092000	73449000	218910000	108490000	110420000	53166	851	50074	321332;321333;321334;321335;321336;321337;321338;321339;321340;321341;321342;321343;321344;321345;321346;321347;321348;321349;321350;321351;321352;321353;321354;321355;321356;321357;321358;321359;321360;321361;321362;321363;321364;321365;321366;321367;321368;321369;321370;321371;321372;321373;321374;321375;321376;321377	432669;432670;432671;432672;432673;432674;432675;432676;432677;432678;432679;432680;432681;432682;432683;432684;432685;432686;432687;432688;432689;432690;432691;432692;432693;432694;432695;432696;432697;432698;432699;432700;432701;432702;432703;432704;432705;432706;432707;432708;432709;432710;432711;432712;432713;432714;432715;432716;432717;432718;432719;432720;432721;432722;432723;432724	432678		378	56	
VALWNEVDGQTK	1	Unmodified	1358.683	0.68302954	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	57.36	56.546	2	9.3058E-06	48897	160511_QHF_FH_JSI11i_2	119.27	112.67			0.75157	0.76015	21.27	7	4	Median	0.81885	0.68668	0.30758	2	1	Median	0.57438	0.68225	29.534	2	2	Median	0.91699	0.92012	25.965	2	1	Median	0.69252	0.76015	NaN	1	0	Median	703400000	401550000	301850000	135250000	71415000	63832000	235250000	142320000	92928000	252980000	141940000	111040000	79916000	45863000	34053000	53167	2902	50075	321378;321379;321380;321381;321382;321383;321384	432725;432726;432727;432728;432729;432730;432731;432732;432733;432734	432733			10	
VALYIAR	0	Unmodified	804.48577	0.48577371	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	50.571	41.241	2	0.013737	22430	160513_QHF_FH_JSI11Kac_6	76.347	45.928			1.0501	1.0753	12.028	4	1	Median	1.4102	1.2093	NaN	1	1	Median	0.78824	0.91129	NaN	1	0	Median	1.15	1.1164	NaN	1	0	Median	0.95891	1.0358	NaN	1	0	Median	140500000	68330000	72165000	27185000	12853000	14332000	52552000	25929000	26623000	45498000	22110000	23388000	15261000	7438900	7822000	53168	3335	50076	321385;321386;321387;321388	432735;432736;432737	432735			3	
VAMANIQPQMLVAGATSIAR	0	Unmodified	2041.0813	0.081250569	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.04	0.808	8	9	9							6	6	7	7	96.637	96.363	2;3	1.7183E-18	85339	160511_QHF_FH_JSI10i_2	204.28	174.74			0.92073	1.0013	16.68	22	7	Median	1.2036	1.0172	20.119	4	2	Median	0.89831	1.0798	17.93	6	1	Median	0.97014	0.93833	13.162	6	1	Median	0.85201	0.92586	14.318	6	3	Median	1516500000	767590000	748910000	280210000	120210000	160010000	445940000	240910000	205030000	465990000	237360000	228640000	324360000	169110000	155240000	53169	1139	50077	321389;321390;321391;321392;321393;321394;321395;321396;321397;321398;321399;321400;321401;321402;321403;321404;321405;321406;321407;321408;321409;321410;321411;321412;321413;321414	432738;432739;432740;432741;432742;432743;432744;432745;432746;432747;432748;432749;432750;432751;432752;432753;432754;432755;432756;432757;432758;432759;432760;432761;432762;432763;432764;432765;432766;432767;432768;432769;432770;432771;432772;432773;432774;432775;432776;432777;432778;432779;432780;432781;432782	432777			45	
VAMANIQPQMLVAGATSIAR	0	Oxidation (M)	2057.0762	0.076165191	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0				By MS/MS	3	0			3										3	84.617	84.445	2;3	0.00011648	75999	160511_QHF_FH_JSI12i_3	72.937	50.404			0.81634	0.82343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81634	0.82343	NaN	1	0	Median	36382000	19848000	16534000	0	0	0	0	0	0	0	0	0	36382000	19848000	16534000	53170	1139	50077	321415;321416;321417	432783;432784;432785	432784		775;776	2	
VAMEIQHR	0	Unmodified	982.50183	0.50183448	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	6.17		3	6						4	2	4	4	3	17.944	15.305	2;3	4.1118E-05	12707	160511_QHF_FH_JSI11i_3	112.17	101.3			1.1717	1.1581	29.996	13	0	Median	1.2614	1.0756	13.174	2	0	Median	0.92894	1.1038	52.27	4	0	Median	1.2425	1.193	19.849	4	0	Median	1.0815	1.0813	15.095	3	0	Median	2898400000	1525800000	1372600000	204110000	97853000	106260000	340020000	211080000	128940000	1263400000	560510000	702930000	1090900000	656390000	434480000	53171	950	50078	321418;321419;321420;321421;321422;321423;321424;321425;321426;321427;321428;321429;321430	432786;432787;432788;432789;432790;432791;432792;432793;432794;432795;432796;432797;432798;432799;432800;432801;432802;432803	432787			16	
VAMEIQHR	0	Oxidation (M)	998.49675	0.4967491	950	P0CW18	PRSS56	Serine protease 56	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	15.907	15.495	3	0.00046144	12138	160511_QHF_FH_JSI12i_3	86.472	76.058			0.93406	0.9358	35.142	5	1	Median	0.93406	0.79894	NaN	1	0	Median	1.2131	1.3813	NaN	1	0	Median	1.2739	1.1904	55.054	2	1	Median	0.90314	0.9358	NaN	1	0	Median	493100000	247730000	245370000	8451000	4923600	3527400	28703000	13084000	15619000	272050000	131580000	140470000	183890000	98142000	85749000	53172	950	50078	321431;321432;321433;321434;321435	432804;432805;432806;432807;432808	432807		524	4	
VAMFLTDSNNIK	1	Unmodified	1351.6806	0.6805867	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.91	6.13		5	2					4		3	3	2	3	65.345	60.9	2	1.1893E-22	52933	160511_QHF_FH_JSI11i_2	172.59	139.7			0.99796	1.0129	19.952	11	4	Median	1.0288	0.87956	17.295	3	0	Median	0.85254	1.0105	33.492	3	2	Median	1.0216	1.0212	1.1482	2	0	Median	0.92502	1.0621	23.183	3	2	Median	1797200000	956780000	840390000	352240000	173740000	178490000	589150000	311050000	278100000	474320000	263640000	210680000	381460000	208340000	173110000	53173	2614	50079	321436;321437;321438;321439;321440;321441;321442;321443;321444;321445;321446	432809;432810;432811;432812;432813;432814;432815;432816;432817;432818;432819;432820;432821;432822;432823	432817			15	
VAMGAFDK	1	Unmodified	837.40547	0.40547447	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							3	2	2	3	32.812	32.072	2	0.0033437	25885	160511_QHF_FH_JSI9i_3	73.26	49.288			1.0952	1.199	42.841	10	3	Median	1.4065	1.1546	60.573	3	2	Median	1.0885	1.337	10.059	2	0	Median	1.4076	1.4145	41.936	2	1	Median	0.65422	0.72407	36.38	3	0	Median	2570500000	1243500000	1327000000	740310000	271280000	469020000	630720000	354890000	275830000	665400000	342800000	322600000	534050000	274530000	259510000	53174	997	50080	321447;321448;321449;321450;321451;321452;321453;321454;321455;321456	432824;432825;432826;432827;432828;432829;432830;432831;432832;432833;432834	432827			11	
VAMGAFDKTRPVVAAGAVGLAQR	1	Acetyl (K)	2326.258	0.25796938	997	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			77.972	71.906	3	0.0065063	39295	160513_QHF_FH_JSI10Kac_6	49.66	34.238			0.95263	1.1459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95263	1.1459	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	148100000	73607000	74489000	0	0	0	148100000	73607000	74489000	0	0	0	0	0	0	53175	997	50081	321457	432835	432835	790		1	
VAMHILNNGR	0	Unmodified	1123.592	0.59204647	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			32.785	27.818	3	0.00079267	15729	160513_QHF_FH_JSI10Kac_6	47.853	36.988			0.68055	0.67033	69.859	2	1	Median	0.50057	0.40903	NaN	1	1	Median	0.92523	1.0985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58067000	33348000	24718000	47294000	28136000	19158000	10773000	5212300	5560800	0	0	0	0	0	0	53176	1675	50082	321458;321459	432836;432837	432837			2	
VAMIDETR	0	Unmodified	933.45897	0.45896661	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	24.988	24.387	2	0.0022782	21700	160511_QHF_FH_JSI12i_1	81.296	44.901			1.2025	1.1105	17.024	6	0	Median	1.5322	1.2783	24.11	2	0	Median	0.80351	0.94559	NaN	1	0	Median	1.2143	1.2187	8.9424	2	0	Median	0.96453	1.0331	NaN	1	0	Median	928440000	464370000	464070000	219700000	98473000	121230000	142150000	85983000	56166000	300880000	139690000	161190000	265700000	140230000	125480000	53177	2780	50083	321460;321461;321462;321463;321464;321465;321466	432838;432839;432840;432841;432842;432843	432840			6	
VAMNILNSGR	0	Unmodified	1073.5652	0.56516301	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	46.564	45.657	2	0.0002121	38220	160511_QHF_FH_JSI10i_3	81.525	71.563			0.97559	1.0161	13.084	6	0	Median	1.3633	1.1453	13.934	2	0	Median	0.87842	1.0329	5.3244	2	0	Median	0.99454	0.93553	NaN	1	0	Median	0.85177	0.86101	NaN	1	0	Median	571620000	284440000	287180000	186760000	79093000	107660000	219810000	118160000	101660000	79686000	42739000	36946000	85363000	44457000	40907000	53178	4777	50084	321467;321468;321469;321470;321471;321472	432844;432845;432846;432847;432848;432849;432850;432851;432852	432845			9	
VAMQDATAQMAMLQFISSGLSK	1	Unmodified	2327.1324	0.13235944	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.95	3	4							4	2	4	3	2	100.14	96.718	3	3.9247E-37	87955	160511_QHF_FH_JSI12i_2	191.22	182.6			1.067	1.0957	18.202	10	0	Median	1.3374	1.1378	14.663	2	0	Median	0.70961	0.8732	28.081	3	0	Plateau	0.9592	0.98622	2.8468	3	0	Plateau	1.1772	1.2923	4.6467	2	0	Median	2158600000	1098100000	1060500000	414570000	191050000	223520000	681550000	362690000	318860000	631020000	314940000	316070000	431450000	229390000	202050000	53179	4315	50085	321473;321474;321475;321476;321477;321478;321479;321480;321481;321482;321483	432853;432854;432855;432856;432857;432858;432859;432860;432861;432862;432863	432853			11	
VAMSHFEPNEYIHYDLLEK	1	Unmodified	2334.0991	0.099068703	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	2	4	3	79.416	78.879	4	7.8792E-14	68153	160511_QHF_FH_JSI12i_3	142.98	134.19			0.9308	0.92804	20.803	12	4	Median	1.1139	0.969	5.922	3	2	Median	0.72617	0.9006	21.772	2	0	Median	0.87472	0.84884	29.523	4	1	Median	0.99028	1.0012	27.118	3	1	Median	1872800000	868840000	1004000000	145440000	69031000	76405000	129030000	75792000	53236000	844120000	381650000	462460000	754220000	342360000	411860000	53180	4315	50086	321484;321485;321486;321487;321488;321489;321490;321491;321492;321493;321494;321495	432864;432865;432866;432867;432868;432869;432870;432871;432872;432873;432874;432875;432876;432877;432878;432879;432880;432881	432879			17	
VAMSHFEPNEYIHYDLLEK	1	Oxidation (M)	2350.094	0.093983325	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	70.729	70.431	3	0.00025705	60997	160511_QHF_FH_JSI12i_3	63.337	49.027			1.1803	1.2133	18.541	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1803	1.2133	18.541	2	2	Median	91208000	39050000	52159000	0	0	0	0	0	0	0	0	0	91208000	39050000	52159000	53181	4315	50086	321496;321497;321498	432882;432883;432884	432884		2441	3	
VANAESLNAIGVLIYMDQTK	1	Unmodified	2149.1089	0.10890511	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.73		4							7	3	2	3	3	96.744	91.136	2;3	4.4422E-105	47898	160513_QHF_FH_JSI11Kac_6	294.39	273.92			0.84641	0.87625	11.299	11	1	Median	1.1108	0.94681	6.1957	3	0	Median	0.70937	0.85995	5.0373	2	0	Median	0.84641	0.87625	9.0801	3	0	Plateau	0.83116	0.9345	17.204	3	1	Median	2376800000	1281600000	1095200000	488740000	231060000	257670000	388740000	226340000	162410000	846160000	451990000	394170000	653160000	372230000	280940000	53182	793	50087	321499;321500;321501;321502;321503;321504;321505;321506;321507;321508;321509	432885;432886;432887;432888;432889;432890;432891;432892;432893;432894;432895;432896;432897;432898;432899;432900;432901	432888			17	
VANASYYR	0	Unmodified	942.45593	0.45593014	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	13.602	13.046	2	0.041026	10268	160511_QHF_FH_JSI11i_2	39.253	14.359			1.0419	1.06	6.6047	3	0	Median	1.4102	1.1734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0419	1.0367	NaN	1	0	Median	0.94363	1.06	NaN	1	0	Median	131060000	66157000	64908000	34766000	16307000	18459000	0	0	0	66149000	31505000	34645000	30149000	18345000	11805000	53183	238	50088	321510;321511;321512	432902	432902			1	
VANEPSLK	1	Unmodified	856.46543	0.46543219	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	16.04	15.308	2	0.0083499	12908	160511_QHF_FH_JSI12i_1	57.047	26.544			1.1128	1.0137	15.772	2	0	Median	1.3812	1.1333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89655	0.90672	NaN	1	0	Median	352480000	206250000	146230000	170510000	98884000	71630000	0	0	0	0	0	0	181960000	107370000	74598000	53184	2521	50089	321513;321514	432903;432904;432905	432904			3	
VANGLLGDQGLPGVFVLYELSPMMVK	1	Unmodified	2746.4438	0.44378082	5501	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		103.33	103.25	3	1.3206E-09	91029	160511_QHF_FH_JSI11i_2	74.274	67.698			1.104	1.1132	4.1878	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.9017	1.0606	NaN	1	0	Median	1.0959	1.1132	4.4104	2	2	Median	NaN	NaN	NaN	0	0	Median	97442000	46436000	51005000	0	0	0	16522000	7601800	8919800	80920000	38835000	42086000	0	0	0	53185	5501	50090	321515;321516;321517	432906;432907;432908	432906			3	
VANHMDGFQR	0	Unmodified	1173.5349	0.53492552	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								2	2	3	15.473	15.296	2;3	0.00040531	12076	160511_QHF_FH_JSI12i_3	51.979	48.476			0.94379	1.0539	15.738	5	1	Median	NaN	NaN	NaN	0	0	Median	0.94379	1.0886	NaN	1	0	Median	1.1624	1.077	3.0698	2	0	Median	0.8477	0.85399	17.735	2	1	Median	374430000	196640000	177790000	0	0	0	24092000	12948000	11144000	183960000	87172000	96784000	166380000	96524000	69860000	53186	4991	50091	321518;321519;321520;321521;321522;321523;321524	432909;432910;432911;432912;432913;432914	432912			6	
VANIIAEVAK	1	Unmodified	1026.6073	0.6073454	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	57.57	56.633	2	0.012686	48616	160511_QHF_FH_JSI12i_2	44.882	31.845			0.92745	0.90198	25.312	4	0	Median	0.83188	0.68862	NaN	1	0	Median	0.59833	0.74438	NaN	1	0	Median	1.1063	1.0929	NaN	1	0	Median	1.034	1.1187	NaN	1	0	Median	149200000	88649000	60547000	25608000	13432000	12175000	30309000	22802000	7507200	48088000	27004000	21084000	45192000	25411000	19781000	53187	1769	50092	321525;321526;321527;321528	432915	432915			1	
VANILHDDCAFLSAFGDVSKPER	1	Unmodified	2560.238	0.2380218	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		88.773	88.237	4	3.6588E-11	78439	160511_QHF_FH_JSI11i_3	101.75	94.387			0.99796	0.89702	26.513	3	2	Median	NaN	NaN	NaN	0	0	Median	0.76473	0.92499	37.411	2	2	Median	0.99796	0.89702	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60554000	33594000	26960000	0	0	0	26319000	16731000	9587600	34235000	16862000	17373000	0	0	0	53188	4390	50093	321529;321530;321531	432916;432917;432918;432919	432917			4	
VANLHFPSVYVEQK	1	Unmodified	1629.8515	0.85149185	2910	Q5K651	SAMD9	Sterile alpha motif domain-containing protein 9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.09	62.804	3	0.00025387	54178	160511_QHF_FH_JSI12i_3	65.219	51.473			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53189	2910	50094	321532	432920	432920			1	
VANPSGNLTETYVQDR	0	Unmodified	1762.8486	0.84859132	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.7	8	4				1	4			3	4	4	6	47.541	44.391	2;3	6.0036E-40	40025	160511_QHF_FH_JSI10i_1	200.21	174.77			0.83553	0.92962	15.13	16	0	Median	1.2793	1.0418	9.3059	3	0	Median	0.76867	0.92221	10.846	4	0	Median	0.85296	0.82619	20.508	4	0	Median	0.87875	0.94317	17.015	5	0	Median	4636000000	2439300000	2196800000	992250000	415210000	577040000	1317500000	786850000	530680000	1239200000	638450000	600740000	1087100000	598780000	488290000	53190	1192	50095	321533;321534;321535;321536;321537;321538;321539;321540;321541;321542;321543;321544;321545;321546;321547;321548;321549	432921;432922;432923;432924;432925;432926;432927;432928;432929;432930;432931;432932;432933;432934;432935;432936;432937;432938;432939;432940;432941;432942;432943;432944;432945	432930			21	
VANPSGNLTETYVQDRGDGMYK	1	Oxidation (M)	2430.1122	0.11215258	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									1	2	45.569	45.408	3	1.5815E-07	38600	160511_QHF_FH_JSI12i_3	90.316	82.227			1.1587	1.1071	21.46	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1587	1.1071	NaN	1	0	Median	1.245	1.2614	28.416	2	0	Median	355340000	183580000	171760000	0	0	0	0	0	0	82838000	38091000	44747000	272500000	145490000	127020000	53191	1192	50096	321550;321551;321552	432946;432947;432948;432949;432950;432951	432948		819	6	
VANPSGNLTETYVQDRGDGMYK	1	Unmodified	2414.1172	0.11723796	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	52.382	51.758	3	1.7395E-22	45779	160511_QHF_FH_JSI10i_2	156.85	147.34			1.056	1.1025	9.5305	9	0	Median	1.158	0.97038	NaN	1	0	Median	1.059	1.2653	1.9258	2	0	Median	1.1135	1.1087	7.2421	3	0	Plateau	1.0449	1.1025	2.2997	3	0	Median	4353000000	2097500000	2255500000	562630000	252880000	309750000	753430000	347040000	406390000	1341800000	632140000	709610000	1695200000	865420000	829800000	53192	1192	50096	321553;321554;321555;321556;321557;321558;321559;321560;321561	432952;432953;432954;432955;432956;432957;432958;432959;432960;432961;432962;432963;432964;432965;432966;432967;432968;432969;432970;432971;432972	432969			21	
VANQIKEEEEK	2	Unmodified	1315.662	0.66195975	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	10.095	10.158	2	0.011378	7492	160511_QHF_FH_JSI12i_3	83.397	47.886			3.3489	3.1993	89.388	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.3489	3.1993	NaN	1	1	Median	0.69276	0.71587	32.197	2	2	Median	49362000	19492000	29870000	0	0	0	0	0	0	18316000	3703700	14612000	31046000	15789000	15258000	53193	5755	50097	321562;321563;321564	432973;432974;432975	432975			3	
VANREENEILPPDHLNGVK	1	Unmodified	2143.1022	0.10218025	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		42.553	42.553	3;4	0.002791	37484	160511_QHF_FH_JSI11i_3	48.848	32.163			1.3436	1.254	7.91	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3436	1.254	7.91	2	1	Median	NaN	NaN	NaN	0	0	Median	135970000	67558000	68409000	0	0	0	0	0	0	135970000	67558000	68409000	0	0	0	53194	4374	50098	321565;321566	432976;432977;432978	432978			3	
VANTSSFHTTPNTSLGMVQATPSK	1	Unmodified	2475.2064	0.20638732	358	O43683	BUB1	Mitotic checkpoint serine/threonine-protein kinase BUB1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		51.495	51.495	3	1.6628E-08	45561	160511_QHF_FH_JSI11i_3	86.211	73.023			0.6761	0.62462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6761	0.62462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44020000	27055000	16965000	0	0	0	0	0	0	44020000	27055000	16965000	0	0	0	53195	358	50099	321567	432979	432979			1	
VANTSTQTMGPR	0	Unmodified	1261.6085	0.60848439	1009	P11940	PABPC1	Polyadenylate-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		11.425	11.22	3	0.052887	8608	160511_QHF_FH_JSI11i_2	13.964	0			0.98837	1.0321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98837	1.0321	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37294000	20002000	17292000	0	0	0	0	0	0	37294000	20002000	17292000	0	0	0	53196	1009	50100	321568	432980	432980			1	
VANVELYYR	0	Unmodified	1125.5819	0.58185893	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.61	6.76	3	4	2				1	4	4	4	7	4	3	50.249	44.756	2	2.0167E-05	39399	160511_QHF_FH_JSI10i_2	106.91	91.249			1.0919	1.1234	12.514	18	0	Median	1.2255	1.0555	13.639	4	0	Median	1.0258	1.1602	12.282	7	0	Median	1.214	1.2226	11.867	4	0	Median	0.95189	1.0649	5.7144	3	0	Median	2605700000	1242900000	1362800000	389660000	173050000	216620000	1005800000	492790000	513000000	729010000	317120000	411890000	481270000	259950000	221320000	53197	2155	50101	321569;321570;321571;321572;321573;321574;321575;321576;321577;321578;321579;321580;321581;321582;321583;321584;321585;321586	432981;432982;432983;432984;432985;432986;432987;432988;432989;432990;432991;432992;432993;432994;432995;432996;432997;432998;432999;433000;433001;433002;433003	432999			23	
VANVSAAEDSVSQR	0	Unmodified	1431.6954	0.69538514	5121	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	27.306	26.932	2	0.00077651	24053	160511_QHF_FH_JSI12i_1	87.363	71.109			0.49405	0.50014	63.456	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32653	0.31932	NaN	1	0	Median	0.7475	0.78337	NaN	1	1	Median	148260000	105510000	42746000	0	0	0	0	0	0	85466000	61625000	23841000	62790000	43885000	18905000	53198	5121	50102	321587;321588	433004;433005	433005			2	
VANVSLLALYK	1	Unmodified	1189.7071	0.70705945	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.77	6.61	3	4	4				1	7	7	6	6	8	6	78.998	73.165	2;3	7.3975E-13	66120	160511_QHF_FH_JSI12i_3	142.83	122.31			0.97502	1.0144	32.549	26	5	Median	1.2459	1.0408	21.789	6	1	Median	0.86661	1.0379	5.8691	6	1	Median	0.99935	0.98162	53.783	8	2	Median	0.93768	0.99868	24.565	6	1	Median	21961000000	10148000000	11813000000	4712400000	1908900000	2803500000	6445400000	3237900000	3207500000	6724200000	3073400000	3650800000	4078800000	1927900000	2151000000	53199	1992	50103	321589;321590;321591;321592;321593;321594;321595;321596;321597;321598;321599;321600;321601;321602;321603;321604;321605;321606;321607;321608;321609;321610;321611;321612;321613;321614	433006;433007;433008;433009;433010;433011;433012;433013;433014;433015;433016;433017;433018;433019;433020;433021;433022;433023;433024;433025;433026;433027;433028;433029;433030;433031;433032;433033;433034;433035;433036;433037;433038;433039;433040;433041;433042;433043;433044;433045;433046;433047;433048;433049;433050;433051;433052;433053;433054;433055;433056;433057;433058;433059;433060;433061	433056			56	
VANVSLLALYKGK	2	Acetyl (K)	1416.8341	0.83405088	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	82.36	74.116	2;3	8.3745E-25	40079	160513_QHF_FH_JSI9Kac_6	168.3	125.56			0.76881	0.86097	20.796	8	0	Median	1.0514	0.8982	3.9024	2	0	Median	0.80675	0.95714	8.8843	2	0	Median	0.60991	0.59388	13.868	2	0	Median	0.75164	0.80573	7.2942	2	0	Median	367550000	191360000	176200000	70793000	31998000	38795000	110960000	62150000	48814000	116890000	58917000	57977000	68903000	38292000	30611000	53200	1992	50104	321615;321616;321617;321618;321619;321620;321621;321622	433062;433063;433064;433065;433066;433067;433068;433069	433063	2017		8	
VANYFDWISYHVGRPFISQYNV	0	Unmodified	2674.2969	0.29685731	827	P05156	CFI	Complement factor I;Complement factor I heavy chain;Complement factor I light chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		93.787	85.769	3	0.0002597	47938	160513_QHF_FH_JSI9Kac_6	80.786	65.842			0.75269	0.87269	21.87	3	2	Plateau	0.75269	0.64717	NaN	1	1	Median	0.63711	0.76301	NaN	1	1	Median	1.0546	0.99813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242770000	144500000	98271000	39364000	22151000	17213000	123030000	75242000	47788000	80374000	47104000	33270000	0	0	0	53201	827	50105	321623;321624;321625	433070;433071;433072	433071			3	
VAPADGFSDLAMQVMTSPSK	1	Unmodified	2050.9704	0.97036272	3903	Q92896	GLG1	Golgi apparatus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										3	1	1	96.849	96.686	2;3	2.0485E-06	87775	160511_QHF_FH_JSI12i_1	84.249	74.461			1.0952	1.0526	16.548	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73195	0.82997	NaN	1	1	Median	1.0952	1.0526	NaN	1	0	Median	1.1512	1.1411	NaN	1	0	Median	57028000	27977000	29051000	0	0	0	31802000	17439000	14363000	11843000	6404100	5439100	13383000	4134900	9248300	53202	3903	50106	321626;321627;321628;321629;321630	433073;433074;433075;433076;433077;433078;433079;433080;433081;433082	433076			10	
VAPAEPQEAPDSTAAGGSASK	1	Unmodified	1939.9123	0.91231379	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	26.715	26.137	2;3	5.5586E-15	23050	160511_QHF_FH_JSI11i_1	135.45	129.5			1.0285	1.0978	8.7791	8	1	Median	1.4608	1.2092	1.1089	2	0	Median	0.86963	1.0402	7.931	2	0	Median	1.1506	1.1338	4.8785	2	0	Median	0.94911	0.99645	0.61868	2	1	Median	1381400000	719160000	662240000	284870000	142210000	142660000	418760000	229890000	188860000	351910000	165620000	186290000	325850000	181430000	144420000	53203	2817	50107	321631;321632;321633;321634;321635;321636;321637;321638	433083;433084;433085;433086;433087;433088;433089;433090;433091;433092;433093;433094;433095	433084			12	
VAPAPAAADAEVEQTDAESK	1	Unmodified	1968.9276	0.9276295	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	3.64	7				1					2	1	2	3	41.449	39.704	2;3	5.907E-16	36022	160511_QHF_FH_JSI12i_1	154.07	139.51			0.86863	0.93847	14.664	8	5	Median	1.1782	0.99314	8.5092	2	0	Median	0.80908	0.94181	NaN	1	0	Median	0.93889	0.90063	31.308	2	2	Median	0.77593	0.82762	10.415	3	3	Median	374930000	192270000	182660000	125480000	62916000	62561000	50141000	26411000	23729000	105600000	50211000	55388000	93718000	52732000	40986000	53204	384	50108	321639;321640;321641;321642;321643;321644;321645;321646	433096;433097;433098;433099;433100;433101;433102;433103;433104	433098			9	
VAPAPARPSGPSK	1	Unmodified	1233.683	0.68296996	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	7.75	6.4		1	4						3	2	3	1	2	15.129	12.192	3	0.00093019	10236	160511_QHF_FH_JSI10i_2	33.273	20.657			0.82394	0.8933	13.131	8	0	Median	1.1417	0.93402	9.6472	2	0	Median	0.82103	0.9826	7.5112	3	0	Median	0.7261	0.67371	NaN	1	0	Median	0.85253	0.89158	1.651	2	0	Median	1051800000	542780000	509050000	415460000	203910000	211550000	499490000	268930000	230560000	88827000	38808000	50019000	48055000	31133000	16922000	53205	1620	50109	321647;321648;321649;321650;321651;321652;321653;321654	433105;433106;433107;433108;433109;433110	433109			6	
VAPAPAVVK	1	Unmodified	850.52764	0.52763852	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.43	4	4	4		1	4	2			4	4	6	5	27.466	23.319	2	9.5741E-05	21643	160511_QHF_FH_JSI12i_1	108.24	68.135			1.0192	1.0538	16.716	19	1	Median	1.1728	0.95602	28.868	4	1	Median	0.90101	1.0659	7.6356	4	0	Median	1.0926	1.0968	12.832	6	0	Median	0.94744	1.0014	16.594	5	0	Median	13777000000	6237300000	7539800000	4097100000	1629900000	2467200000	3041100000	1700900000	1340200000	3177500000	1217600000	1960000000	3461400000	1688900000	1772500000	53206	2007	50110	321655;321656;321657;321658;321659;321660;321661;321662;321663;321664;321665;321666;321667;321668;321669;321670;321671;321672;321673	433111;433112;433113;433114;433115;433116;433117;433118;433119;433120;433121;433122;433123;433124;433125;433126;433127;433128;433129;433130;433131;433132;433133;433134;433135;433136;433137;433138;433139;433140;433141;433142;433143;433144;433145;433146;433147;433148;433149;433150	433121			40	
VAPAQPSEEGPGR	0	Unmodified	1293.6313	0.63132832	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	18.715	16.317	2	3.9905E-06	13870	160511_QHF_FH_JSI10i_1	123.75	114.89			1.1169	1.087	13.372	7	7	Median	1.2915	1.0549	NaN	1	1	Median	1.0947	1.2799	2.863	2	2	Median	1.0307	1.0108	10.276	2	2	Median	1.0182	1.0974	18.72	2	2	Median	1843800000	889650000	954160000	380210000	166750000	213460000	716860000	359250000	357610000	391750000	188770000	202980000	354980000	174870000	180100000	53207	1237	50111	321674;321675;321676;321677;321678;321679;321680	433151;433152;433153;433154;433155;433156;433157	433155			7	
VAPAQPSEEGPGRK	1	Unmodified	1421.7263	0.72629134	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.98	3	8	6				1	3		3	5	8	5	13.501	11.469	2;3	3.4383E-05	9633	160511_QHF_FH_JSI10i_2	98	75.082			0.91365	0.9447	20.376	21	5	Median	1.0064	0.87922	9.7881	3	0	Median	0.83033	0.9447	8.7286	5	0	Median	0.93295	0.91171	29.153	8	3	Median	0.88247	0.96684	20.29	5	2	Median	3340000000	1648000000	1691900000	624220000	311750000	312470000	979600000	501250000	478350000	1352800000	627680000	725090000	383410000	207370000	176040000	53208	1237	50112	321681;321682;321683;321684;321685;321686;321687;321688;321689;321690;321691;321692;321693;321694;321695;321696;321697;321698;321699;321700;321701	433158;433159;433160;433161;433162;433163;433164;433165;433166;433167;433168;433169;433170;433171;433172;433173;433174;433175;433176;433177;433178;433179;433180;433181;433182;433183;433184;433185;433186;433187;433188;433189	433187			32	
VAPAQPSEEGPGRKDENK	2	Unmodified	1907.9337	0.93371793	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.14	5.17		6	5					3		2	5	5	2	12.589	10.316	3;4	1.3398E-16	8551	160511_QHF_FH_JSI11i_3	125.52	114.47			1.0252	1.0554	12.046	14	0	Median	1.2363	1.0559	4.5938	2	0	Median	0.84611	0.98398	13.139	5	0	Median	1.0783	1.0762	11.027	5	0	Median	1.0526	1.1268	4.4402	2	0	Median	2398400000	1161100000	1237300000	427020000	185400000	241630000	1086700000	589650000	497080000	843070000	366630000	476440000	41630000	19465000	22165000	53209	1237	50113	321702;321703;321704;321705;321706;321707;321708;321709;321710;321711;321712;321713;321714;321715	433190;433191;433192;433193;433194;433195;433196;433197;433198;433199;433200;433201;433202;433203;433204;433205;433206;433207;433208	433193			19	
VAPDEHPILLTEAPLNPK	1	Unmodified	1953.0571	0.057127534	2865	Q562R1	ACTBL2	Beta-actin-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.83	2		1					1		1	1	1	1	65.379	62.479	4	7.8831E-05	57162	160511_QHF_FH_JSI12i_1	62.646	1.4193			0.99622	1.1199	20.398	4	1	Median	1.6028	1.3672	NaN	1	1	Median	1.0446	1.2413	NaN	1	0	Median	0.91982	0.86856	NaN	1	0	Median	0.95005	1.0105	NaN	1	0	Median	852900000	387160000	465740000	22378000	6058300	16319000	298000000	134710000	163290000	280510000	125400000	155110000	252010000	120990000	131010000	53210	2865	50114	321716;321717;321718;321719	433209;433210;433211;433212	433210			4	
VAPEEHPVLLTEAPLNPK	1	Unmodified	1953.0571	0.057127534	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.3	14	18	11				6	15	4	14	17	20	17	66.827	62.392	2;3;4	2.0645E-123	54518	160511_QHF_FH_JSI11i_2	249.33	91.075			0.99287	1.0445	22.495	65	26	Median	1.3891	1.2054	35.221	14	5	Median	0.96684	1.1202	17.189	16	7	Median	0.98773	0.96687	16.579	18	8	Median	0.95165	1.0236	18.889	17	6	Median	168630000000	80893000000	87740000000	33959000000	13867000000	20092000000	36388000000	18349000000	18039000000	66020000000	31144000000	34876000000	32265000000	17533000000	14733000000	53211	1916;2062	50115	321720;321721;321722;321723;321724;321725;321726;321727;321728;321729;321730;321731;321732;321733;321734;321735;321736;321737;321738;321739;321740;321741;321742;321743;321744;321745;321746;321747;321748;321749;321750;321751;321752;321753;321754;321755;321756;321757;321758;321759;321760;321761;321762;321763;321764;321765;321766;321767;321768;321769;321770;321771;321772;321773;321774;321775;321776;321777;321778;321779;321780;321781;321782;321783;321784;321785;321786;321787	433213;433214;433215;433216;433217;433218;433219;433220;433221;433222;433223;433224;433225;433226;433227;433228;433229;433230;433231;433232;433233;433234;433235;433236;433237;433238;433239;433240;433241;433242;433243;433244;433245;433246;433247;433248;433249;433250;433251;433252;433253;433254;433255;433256;433257;433258;433259;433260;433261;433262;433263;433264;433265;433266;433267;433268;433269;433270;433271;433272;433273;433274;433275;433276;433277;433278;433279;433280;433281;433282;433283;433284;433285;433286;433287;433288;433289;433290;433291;433292;433293;433294;433295;433296;433297;433298;433299;433300;433301;433302;433303;433304;433305;433306;433307;433308;433309;433310;433311;433312;433313;433314;433315;433316;433317;433318;433319;433320;433321;433322;433323;433324;433325;433326;433327;433328;433329;433330;433331;433332;433333;433334;433335;433336;433337;433338;433339;433340;433341;433342;433343;433344;433345;433346;433347;433348;433349;433350;433351;433352;433353;433354;433355;433356;433357;433358;433359;433360;433361;433362;433363;433364;433365;433366;433367;433368;433369;433370;433371;433372;433373;433374;433375;433376;433377;433378;433379;433380;433381;433382;433383;433384;433385;433386;433387;433388	433338			176	
VAPEEHPVLLTEAPLNPKANR	1	Unmodified	2294.2383	0.2382798	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	1		By MS/MS			3	0			1								1			57.315	55.774	4	8.7413E-08	46655	160511_QHF_FH_JSI10i_3	89.483	84.957			0.33522	0.40674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33522	0.40674	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86684000	69915000	16769000	0	0	0	86684000	69915000	16769000	0	0	0	0	0	0	53212	1916;2062	50116	321788	433389	433389			1	
VAPGPSSGSTPGQVPGSSALSSPR	0	Unmodified	2179.0869	0.086924112	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		46.854	46.435	3	0.0050369	41993	160511_QHF_FH_JSI11i_1	36.13	30.316			0.70779	0.73778	16.274	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5851	0.65759	NaN	1	1	Median	0.8562	0.82776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49032000	26833000	22199000	0	0	0	20477000	15393000	5083100	28555000	11440000	17116000	0	0	0	53213	3643	50117	321789;321790;321791	433390;433391;433392	433391			3	
VAPHALSEEEK	1	Unmodified	1208.6037	0.60371659	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	2	4	3	15.213	14.805	2;3	1.3511E-07	11669	160511_QHF_FH_JSI12i_3	99.522	84.646			1.1836	1.1249	79.656	12	7	Median	1.9263	1.6195	137.64	3	2	Median	0.87561	1.0549	72.351	2	2	Median	1.3004	1.2035	92.52	4	2	Median	0.96445	1.091	10.364	3	1	Median	619350000	306660000	312690000	136080000	63437000	72647000	39154000	18477000	20677000	182610000	86776000	95831000	261500000	137970000	123530000	53214	5323	50118	321792;321793;321794;321795;321796;321797;321798;321799;321800;321801;321802;321803	433393;433394;433395;433396;433397;433398;433399;433400;433401;433402;433403;433404	433404			12	
VAPLGEEFREGAR	0	Unmodified	1429.7314	0.73137672	58	CON__P15497			yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By matching	2.75	0.433		1	3							1	1	1	1	39.297	38.614	3	0.002716	33876	160511_QHF_FH_JSI11i_3	47.712	23.458		+	1.0638	1.0268	21.539	4	0	Median	1.6316	1.3929	NaN	1	0	Median	0.7033	0.84062	NaN	1	0	Median	1.1823	1.0977	NaN	1	0	Median	0.9573	0.96057	NaN	1	0	Median	513480000	235220000	278260000	113300000	38438000	74865000	91888000	59236000	32652000	219560000	94366000	125200000	88725000	43185000	45540000	53215	58	50119	321804;321805;321806;321807	433405;433406	433405			2	
VAPPAVLNDISK	1	Unmodified	1222.6921	0.69213767	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	6	3								2	2	2	3	63.217	62.447	2	0.001731	53681	160511_QHF_FH_JSI12i_2	60.434	51.901			0.96265	1.6055	33.121	9	5	Linear	1.2428	1.0179	36.538	2	1	Median	1.1048	1.317	77.097	2	1	Median	0.97456	0.97385	10.711	2	1	Median	0.89779	0.94188	3.1858	3	2	Plateau	481190000	242010000	239180000	102400000	45726000	56674000	79496000	37381000	42115000	105440000	55677000	49763000	193850000	103230000	90624000	53216	5646	50120	321808;321809;321810;321811;321812;321813;321814;321815;321816	433407;433408;433409;433410;433411;433412;433413;433414;433415;433416;433417	433408			11	
VAPPGLTQIPQIQK	1	Unmodified	1488.8664	0.86641364	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	3	3	2	69.372	68.633	2;3	2.9073E-05	62600	160511_QHF_FH_JSI12i_1	76.326	73.567			1.0426	1.0465	5.8164	11	0	Median	1.2296	1.0111	2.4138	3	0	Plateau	0.87403	1.016	7.4572	3	0	Plateau	1.0426	1.0637	1.3021	3	0	Plateau	1.063	1.1565	2.9978	2	0	Median	934540000	463540000	471000000	213400000	95092000	118310000	236850000	120990000	115860000	307430000	156600000	150830000	176850000	90860000	85994000	53217	822	50121	321817;321818;321819;321820;321821;321822;321823;321824;321825;321826;321827	433418;433419;433420;433421;433422;433423;433424;433425;433426;433427;433428;433429;433430;433431;433432	433422			15	
VAPPNADLEQGFQEGVPNASVIMQVPER	0	Unmodified	2991.476	0.47602024	4613	Q9GZY8	MFF	Mitochondrial fission factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	95.884	95.585	3;4	1.0655E-10	86824	160511_QHF_FH_JSI12i_1	80.984	78.175			1.2028	1.2915	15.065	4	1	Median	1.6163	1.3006	NaN	1	1	Median	1.0927	1.2825	NaN	1	0	Median	1.0094	0.97654	NaN	1	0	Median	1.324	1.361	NaN	1	0	Median	138810000	62559000	76249000	20168000	5932800	14235000	58238000	29893000	28345000	26038000	12052000	13987000	34364000	14682000	19682000	53218	4613	50122	321828;321829;321830;321831	433433;433434;433435;433436	433434			4	
VAPPYPHLFSSCSPPGMVLDGSPK	1	Unmodified	2539.224	0.22395164	4443	Q9BUK6	MSTO1	Protein misato homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	85.016	84.844	3	6.7855E-05	73719	160511_QHF_FH_JSI12i_3	51.645	48.43			1.284	1.3454	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.284	1.3454	NaN	1	0	Median	46938000	22608000	24329000	0	0	0	0	0	0	0	0	0	46938000	22608000	24329000	53219	4443	50123	321832	433437;433438;433439	433438			3	
VAPQNDSFGTQLPPMHQQQSR	0	Unmodified	2365.1233	0.12332639	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							1	2	4	4	48.301	47.535	3	8.0273E-25	42110	160511_QHF_FH_JSI11i_3	186.01	178.02			1.1541	1.1576	27.592	10	3	Median	1.4251	1.2167	NaN	1	0	Median	1.3691	1.593	52.188	2	1	Median	1.0843	1.0499	12.983	4	2	Median	0.93173	0.93403	27.832	3	0	Plateau	809040000	387100000	421940000	113310000	51051000	62258000	158500000	78636000	79868000	387460000	184590000	202870000	149770000	72820000	76949000	53220	3966	50124	321833;321834;321835;321836;321837;321838;321839;321840;321841;321842;321843	433440;433441;433442;433443;433444;433445;433446;433447;433448;433449;433450;433451;433452;433453;433454;433455;433456;433457;433458;433459;433460;433461	433441			22	
VAPSAVLGPNVSIGK	1	Unmodified	1407.8086	0.80856441	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	1	4	2	63.062	62.412	2;3	0.00022468	54299	160511_QHF_FH_JSI11i_2	43.177	37.232			0.74173	0.7412	31.122	8	0	Median	1.2101	1.0408	NaN	1	0	Median	0.61725	0.70355	NaN	1	0	Median	0.74173	0.7412	39.213	4	0	Median	0.78221	0.8092	19.667	2	0	Median	204680000	116090000	88594000	23715000	11882000	11833000	21444000	13256000	8188600	122120000	69798000	52317000	37408000	21153000	16255000	53221	4124	50125	321844;321845;321846;321847;321848;321849;321850;321851	433462;433463;433464;433465;433466;433467;433468;433469;433470;433471	433469			9	
VAPSILIEFINMFLFPASK	1	Unmodified	2136.1693	0.16932052	5615	Q9Y487	ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.49	99.773	3	3.813E-07	59107	160513_QHF_FH_JSI10Kac_6	90.385	81.222			0.98945	1.1683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98945	1.1683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224790000	108050000	116730000	0	0	0	224790000	108050000	116730000	0	0	0	0	0	0	53222	5615	50126	321852	433472	433472			1	
VAPSKWEAVDESELEAQAVTTSK	2	Unmodified	2474.2177	0.21766351	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	66.595	65.943	3	5.3074E-30	55132	160511_QHF_FH_JSI10i_3	171.58	163.69			0.70143	0.77054	15.598	4	2	Median	NaN	NaN	NaN	0	0	Median	0.57161	0.67846	21.127	2	1	Median	0.86176	0.83059	NaN	1	0	Median	0.72138	0.75368	NaN	1	1	Median	315150000	177090000	138060000	0	0	0	101520000	65235000	36284000	175600000	86328000	89267000	38038000	25529000	12510000	53223	238	50127	321853;321854;321855;321856	433473;433474;433475;433476;433477;433478;433479	433476			7	
VAPSWPESHSSADSASLAK	1	Unmodified	1925.9119	0.91191986	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	43.287	42.563	3	1.2533E-05	37493	160511_QHF_FH_JSI11i_3	77.871	70.161			0.94741	0.90486	15.171	5	1	Median	1.0691	0.90486	NaN	1	0	Median	0.84851	1.0254	NaN	1	0	Median	0.94741	0.88206	NaN	1	0	Median	0.79039	0.83904	25.474	2	1	Median	380170000	194770000	185400000	67093000	30555000	36538000	73512000	41821000	31691000	97377000	49025000	48351000	142190000	73372000	68818000	53224	3239	50128	321857;321858;321859;321860;321861	433480;433481;433482;433483;433484	433480			5	
VAPVLETSHVFCCPNR	0	Unmodified	1884.8975	0.89747254	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	56.228	55.631	3	0.00017715	49268	160511_QHF_FH_JSI11i_3	63.134	52.938			1.0751	1.2044	24.539	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0751	1.2044	NaN	1	0	Median	0.87408	0.79334	NaN	1	0	Median	1.3064	1.2222	NaN	1	0	Median	102590000	54682000	47907000	0	0	0	22354000	13479000	8875000	48668000	24030000	24638000	31566000	17172000	14394000	53225	3050	50129	321862;321863;321864	433485;433486;433487;433488	433487			4	
VAPVLIR	0	Unmodified	766.50651	0.50650915	1351	P30419;O60551	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	39.453	38.651	2	0.020766	33039	160511_QHF_FH_JSI11i_2	56.89	23.919			1.092	1.1793	57.076	5	0	Median	2.7737	2.4083	NaN	1	0	Median	0.45723	0.55907	NaN	1	0	Median	0.80009	0.7909	NaN	1	0	Median	1.3031	1.3595	20.11	2	0	Median	255500000	118470000	137040000	48870000	11820000	37050000	43820000	29911000	13909000	48007000	25633000	22374000	114810000	51105000	63703000	53226	1351	50130	321865;321866;321867;321868;321869	433489;433490	433490			2	
VAPVPLYNSFHDVYK	1	Unmodified	1747.8934	0.89335667	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		10	5							4	3	6	2	71.012	70.252	2;3	1.548E-05	62091	160511_QHF_FH_JSI9i_2	115.82	115.82			0.9284	0.94117	13.201	14	5	Median	1.1611	0.98224	9.1356	3	1	Plateau	0.88017	1.0629	14.233	3	0	Median	0.9255	0.91378	15.322	6	4	Median	0.87922	0.98732	7.5432	2	0	Median	4922400000	2470200000	2452200000	881380000	427600000	453780000	1362500000	735550000	626960000	1921600000	916350000	1005300000	756870000	390720000	366150000	53227	2757	50131	321870;321871;321872;321873;321874;321875;321876;321877;321878;321879;321880;321881;321882;321883;321884	433491;433492;433493;433494;433495;433496;433497;433498;433499;433500;433501;433502;433503;433504;433505;433506;433507;433508;433509;433510;433511;433512;433513;433514;433515;433516;433517;433518;433519;433520;433521;433522	433508			32	
VAPYRPDQQVEEDDDFMDENQGK	1	Unmodified	2724.161	0.16095327	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	1	0	3										1	1	1	55.225	54.736	3	0.023281	49983	160511_QHF_FH_JSI12i_1	27.081	20.206			1.1593	1.1856	19.829	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69542	0.80881	NaN	1	0	Median	1.1521	1.0725	NaN	1	0	Median	1.1593	1.1856	NaN	1	0	Median	169520000	82934000	86581000	0	0	0	49830000	20190000	29640000	50155000	29284000	20871000	69530000	33460000	36070000	53228	3212	50132	321885;321886;321887	433523	433523			1	
VAQAPWK	1	Unmodified	798.43882	0.43882351	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0.707	1	2	1							1		1	2	22.999	22.413	2	0.018166	19219	160511_QHF_FH_JSI9i_2	60.344	50.595			1.1095	1.0776	18.097	4	0	Median	1.3379	1.1076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84165	0.8286	NaN	1	0	Median	1.1095	1.1586	14.138	2	0	Median	1866400000	869140000	997240000	645400000	283480000	361920000	0	0	0	234770000	99276000	135490000	986220000	486380000	499840000	53229	1372	50133	321888;321889;321890;321891	433524;433525	433524			2	
VAQETDVR	0	Unmodified	916.46141	0.46140945	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.0248	7.6754	2	0.0035783	5578	160511_QHF_FH_JSI12i_1	71.491	44.889			0.8834	0.8686	4.8912	4	1	Median	1.0007	0.81439	NaN	1	0	Median	0.73571	0.87137	NaN	1	0	Median	0.8967	0.86585	NaN	1	1	Median	0.8703	0.91772	NaN	1	0	Median	823590000	443680000	379910000	173220000	73172000	100050000	217260000	127890000	89367000	212870000	116060000	96813000	220240000	126550000	93683000	53230	3896	50134	321892;321893;321894;321895	433526;433527;433528;433529;433530;433531	433527			6	
VAQFLVIYAPR	0	Unmodified	1275.7339	0.7339429	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.5	5.16		2						2	8	3	3	3	3	80.674	73.281	2;3	4.7845E-15	38021	160513_QHF_FH_JSI12Kac_6	177.32	159.41			0.94502	1.044	10.393	12	0	Plateau	1.2519	1.0717	12.925	3	0	Plateau	0.9121	1.0712	13.951	3	0	Plateau	1.225	1.1533	11.074	3	0	Plateau	0.92355	0.93371	5.3739	3	0	Plateau	3375000000	1710200000	1664800000	672290000	328090000	344200000	1150100000	531560000	618490000	1100500000	598450000	502020000	452210000	252150000	200070000	53231	4678	50135	321896;321897;321898;321899;321900;321901;321902;321903;321904;321905;321906;321907	433532;433533;433534;433535;433536;433537;433538;433539;433540;433541;433542;433543;433544;433545;433546;433547;433548;433549;433550	433544			18	
VAQGATEK	1	Unmodified	802.41848	0.418482	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	4.6843	4.3634	2	0.0024281	2214	160511_QHF_FH_JSI10i_1	80.165	42.032			1.0859	1.1507	3.9872	7	0	Median	1.3536	1.1398	NaN	1	0	Median	0.9611	1.1538	1.0593	2	0	Median	1.1352	1.1265	4.2359	2	0	Median	1.0967	1.1991	5.835	2	0	Median	3266700000	1637800000	1628900000	217480000	94283000	123190000	1107900000	585110000	522750000	1014000000	506950000	507040000	927360000	451410000	475940000	53232	1649	50136	321908;321909;321910;321911;321912;321913;321914	433551;433552;433553;433554;433555;433556	433556			6	
VAQGIREEEVSYQLAFNK	1	Unmodified	2080.0589	0.058918448	5024	Q9NV70	EXOC1	Exocyst complex component 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	60.366	60.098	3	0.035199	51705	160511_QHF_FH_JSI12i_3	33.308	24.212			1.1592	1.191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1592	1.191	NaN	1	1	Median	65421000	39554000	25867000	0	0	0	0	0	0	0	0	0	65421000	39554000	25867000	53233	5024	50137	321915	433557	433557			1	
VAQGVSGAVQDK	1	Unmodified	1157.6041	0.60405094	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.55	4	1	1		1	3				1	4	3	2	17.954	14.897	2	9.3058E-06	12180	160511_QHF_FH_JSI9i_1	119.27	88.704			0.97069	1.0205	15.631	7	0	Median	1.2409	1.0205	NaN	1	0	Median	0.91607	1.0921	9.4392	2	0	Median	0.95213	0.93004	12.991	2	0	Median	0.82064	0.88678	26.566	2	0	Median	2628000000	1293100000	1334900000	582350000	240460000	341890000	710280000	350320000	359950000	531800000	224710000	307090000	803560000	477640000	325920000	53234	1015	50138	321916;321917;321918;321919;321920;321921;321922;321923;321924;321925	433558;433559;433560;433561;433562;433563;433564;433565;433566;433567;433568;433569;433570;433571;433572	433569			15	
VAQILKEPK	2	Acetyl (K)	1066.6386	0.63864553	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.484						3	5				2	3	3	47.287	37.475	2	0.00057536	20959	160513_QHF_FH_JSI10Kac_4	98.044	59.252			1.0522	1.1433	183.8	7	2	Median	NaN	NaN	NaN	0	0	Median	0.88628	1.0529	23.597	2	0	Median	3.7029	3.6172	247.19	2	1	Median	0.54848	0.58923	245.76	3	1	Plateau	77333000	34689000	42644000	0	0	0	29664000	16823000	12841000	12723000	2612000	10111000	34947000	15255000	19692000	53235	1612	50139	321926;321927;321928;321929;321930;321931;321932;321933	433573;433574;433575;433576;433577;433578;433579;433580;433581	433574	1639		9	
VAQLCDFNPK	1	Unmodified	1190.5754	0.57539335	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	43.135	42.611	2	0.010552	38917	160511_QHF_FH_JSI12i_1	47.561	28.318			1.0904	1.2029	7.1945	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0879	1.2656	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0929	1.1432	NaN	1	0	Median	132220000	68961000	63263000	0	0	0	69239000	33762000	35477000	0	0	0	62985000	35199000	27786000	53236	931	50140	321934;321935	433582;433583	433582			2	
VAQLEQVYIR	0	Unmodified	1217.6768	0.67682195	2003	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.43	4	4	4				3	4	2	5	6	5	5	55.224	50.321	2	1.9714E-07	44199	160511_QHF_FH_JSI9i_2	117.31	87.645			1.0669	1.0726	12.699	21	0	Median	1.2004	0.99125	15.113	5	0	Median	0.86766	1.0458	11.63	6	0	Median	1.2074	1.1645	13.196	5	0	Median	0.94505	0.99619	7.685	5	0	Median	8601200000	4297900000	4303400000	1613400000	744600000	868770000	2267500000	1251900000	1015600000	2681800000	1269100000	1412700000	2038500000	1032200000	1006300000	53237	2003	50141	321936;321937;321938;321939;321940;321941;321942;321943;321944;321945;321946;321947;321948;321949;321950;321951;321952;321953;321954;321955;321956	433584;433585;433586;433587;433588;433589;433590;433591;433592;433593;433594;433595;433596;433597;433598;433599;433600;433601;433602;433603;433604;433605;433606;433607;433608;433609;433610;433611;433612;433613;433614;433615;433616;433617;433618;433619;433620	433605			37	
VAQLKITQR	1	Acetyl (K)	1097.6557	0.65569258	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			40.541	31.635	2	0.024189	17321	160513_QHF_FH_JSI10Kac_3	50.607	10.605			0.85758	1.0171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85758	1.0171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2818400	1412300	1406100	0	0	0	2818400	1412300	1406100	0	0	0	0	0	0	53238	4254	50142	321957	433621	433621	3089		1	
VAQLTNFPK	1	Unmodified	1016.5655	0.56548059	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		41.941	41.467	2	0.039161	35597	160511_QHF_FH_JSI11i_2	46.39	26.613			2.2482	2.2361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2482	2.2361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32312000	8162900	24149000	0	0	0	0	0	0	32312000	8162900	24149000	0	0	0	53239	3260	50143	321958	433622	433622			1	
VAQLYADLDGGFSHAAWLLPGWLPLPSFR	0	Unmodified	3196.6498	0.64982593	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.1	93.38	3	3.5908E-59	54764	160513_QHF_FH_JSI10Kac_6	176.94	148.48			0.83219	0.98541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83219	0.98541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120400000	64982000	55419000	0	0	0	120400000	64982000	55419000	0	0	0	0	0	0	53240	2771	50144	321959	433623	433623			1	
VAQNLVGPDNVHVALSLVEYKPELQK	2	Unmodified	2859.5494	0.54944318	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	91.282	91.238	3;4	1.8116E-20	79162	160511_QHF_FH_JSI12i_3	130.65	118.57			0.93891	0.9656	18.686	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0876	1.02	NaN	1	0	Median	0.81621	0.83411	20.701	2	1	Median	625870000	344050000	281820000	0	0	0	0	0	0	215270000	108050000	107210000	410600000	236000000	174600000	53241	679	50145	321960;321961;321962	433624;433625;433626;433627;433628	433628			5	
VAQNSPSVENIQTSQAEQAK	1	Unmodified	2128.0396	0.039639568	3849	Q92576	PHF3	PHD finger protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	33.987	33.262	3	1.5834E-05	29756	160511_QHF_FH_JSI10i_1	67.579	62.775			1.0995	1.1496	13.28	3	2	Median	1.7577	1.4333	NaN	1	1	Median	0.94915	1.1292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0995	1.1496	NaN	1	1	Median	95937000	40983000	54955000	35501000	12574000	22927000	36657000	19019000	17638000	0	0	0	23779000	9389100	14390000	53242	3849	50146	321963;321964;321965	433629;433630;433631;433632	433631			4	
VAQPGPLEPEEPR	0	Unmodified	1417.7201	0.72014333	4116	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.829	36.218	2	0.00011893	32596	160511_QHF_FH_JSI11i_1	106.29	51.874			0.91008	0.93044	4.0122	4	1	Median	1.1358	0.92453	NaN	1	1	Median	0.84418	0.98855	NaN	1	0	Median	0.92851	0.89825	NaN	1	0	Median	0.89202	0.93638	NaN	1	0	Median	559030000	299560000	259470000	81487000	38790000	42697000	160140000	90723000	69419000	160630000	82884000	77750000	156760000	87161000	69602000	53243	4116	50147	321966;321967;321968;321969	433633;433634;433635;433636;433637;433638	433634			6	
VAQPPLSAQATGSGQPTRK	1	Unmodified	1893.0068	0.0068232975	3325	Q86UK7	ZNF598	Zinc finger protein 598	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			26.82	25.595	3	3.3698E-05	21132	160511_QHF_FH_JSI10i_3	52.298	48.457			0.93091	0.76439	20.805	3	0	Plateau	1.1092	0.93895	29.088	2	0	Median	0.86209	0.99126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139150000	68233000	70914000	100640000	45849000	54795000	38503000	22384000	16118000	0	0	0	0	0	0	53244	3325	50148	321970;321971;321972	433639;433640;433641;433642;433643;433644	433641			5	
VAQPTITDNK	1	Unmodified	1085.5717	0.57168818	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	5.58	4				3	4				2	3	3	3	23.991	18.087	2	1.1434E-09	16796	160511_QHF_FH_JSI11i_1	135.79	79.244			0.98844	1.0411	13.305	11	0	Median	1.0711	0.85769	16.818	2	0	Median	0.94828	1.1332	5.9674	3	0	Median	1.1139	1.0759	10.89	3	0	Median	0.8785	0.93792	9.7922	3	0	Median	4893800000	2385600000	2508200000	1247400000	559390000	687990000	964530000	459500000	505030000	1255800000	563900000	691890000	1426100000	802810000	623330000	53245	1192	50149	321973;321974;321975;321976;321977;321978;321979;321980;321981;321982;321983	433645;433646;433647;433648;433649;433650;433651;433652;433653;433654;433655;433656;433657;433658;433659;433660;433661;433662	433646			18	
VAQREEELEETGNQHNDVEIEEAGEEEEK	1	Unmodified	3368.4764	0.47640999	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		1	0	2										1	1		41.113	40.74	4	7.0002E-14	36722	160511_QHF_FH_JSI11i_1	78.45	72.42			0.68991	0.74356	10.467	2	2	Median	NaN	NaN	NaN	0	0	Median	0.58642	0.69052	NaN	1	1	Median	0.81168	0.80068	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73774000	53657000	20117000	0	0	0	46596000	36542000	10054000	27178000	17115000	10063000	0	0	0	53246	4686	50150	321984;321985	433663;433664	433663			2	
VAQTGQDLK	1	Unmodified	958.50836	0.50835964	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	5.88	4				1	3				1	2	3	2	11.221	7.4061	2	1.4006E-05	7271	160511_QHF_FH_JSI12i_1	109.71	61.866			0.997	0.9969	20	8	0	Median	1.2236	0.99429	NaN	1	0	Median	0.98921	1.165	21.691	2	0	Median	0.89145	0.86938	19.769	3	0	Plateau	0.82508	0.87373	26.514	2	0	Median	1428700000	777390000	651290000	390380000	190210000	200170000	370780000	203310000	167470000	357050000	201360000	155700000	310460000	182510000	127950000	53247	2518	50151	321986;321987;321988;321989;321990;321991;321992;321993	433665;433666;433667;433668;433669;433670;433671;433672;433673;433674	433668			10	
VAQVAEITYGQK	1	Unmodified	1305.6929	0.69286595	622	O94905	ERLIN2	Erlin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	3	1	2	42.392	38.708	2	1.8627E-05	34198	160511_QHF_FH_JSI9i_1	112.15	66.151			0.76557	0.85548	15.403	6	1	Median	1.341	1.104	NaN	1	0	Median	0.74253	0.87263	11.884	3	1	Plateau	0.94994	0.93351	NaN	1	0	Median	0.78933	0.79807	NaN	1	0	Median	451950000	236090000	215860000	89681000	41047000	48634000	112010000	72248000	39763000	119310000	55876000	63431000	130950000	66919000	64033000	53248	622	50152	321994;321995;321996;321997;321998;321999;322000	433675;433676;433677;433678;433679;433680;433681;433682;433683;433684;433685	433683			11	
VAQVLEGFITR	0	Unmodified	1231.6925	0.69247202	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	3	1	1	70.72	70.136	2	0.0023331	61902	160511_QHF_FH_JSI9i_2	61.65	33.908			0.65419	0.66023	115.2	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.8975	2.3055	NaN	1	1	Median	0.28021	0.26903	NaN	1	1	Median	1.5273	1.6203	NaN	1	1	Median	109280000	61699000	47577000	0	0	0	7223400	2233000	4990400	54775000	39750000	15025000	47277000	19717000	27561000	53249	128	50153	322001;322002;322003;322004;322005;322006	433686;433687;433688;433689;433690;433691	433688			6	
VAQWMIQQPHK	1	Unmodified	1364.7023	0.7023252	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.36		1	6						1	3	2	2	1	40.018	39.228	2;3	5.0536E-13	32738	160511_QHF_FH_JSI10i_3	146.81	134.57			0.83729	0.86485	46.324	6	4	Median	1.5484	1.2859	NaN	1	1	Median	0.95166	1.1011	13.144	2	1	Median	0.63498	0.59181	32.642	2	1	Median	0.44167	0.44693	NaN	1	1	Median	1806700000	1006100000	800600000	23307000	10817000	12490000	712030000	340360000	371670000	434760000	251300000	183460000	636600000	403630000	232970000	53250	1856	50154	322007;322008;322009;322010;322011;322012;322013;322014	433692;433693;433694;433695;433696;433697;433698;433699;433700	433695			9	
VAQWMIQQPHK	1	Oxidation (M)	1380.6972	0.69723982	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	32.587	32.094	3	2.1694E-05	27027	160511_QHF_FH_JSI12i_3	90.827	86.994			0.87784	0.87403	26.238	3	2	Median	NaN	NaN	NaN	0	0	Median	0.76298	0.87403	NaN	1	1	Median	1.5183	1.3741	NaN	1	1	Median	0.87784	0.87055	NaN	1	0	Median	247320000	115730000	131590000	0	0	0	46960000	24187000	22774000	47448000	20675000	26773000	152910000	70869000	82039000	53251	1856	50154	322015;322016;322017	433701;433702;433703;433704	433704		1537	4	
VAQYMADVLEDSK	1	Unmodified	1467.6915	0.69154532	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	61.119	60.54	2	0.00030213	55205	160511_QHF_FH_JSI12i_1	99.5	84.234			0.60439	0.49325	14.384	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48249	0.47589	NaN	1	1	Median	0.54279	0.55317	16.213	2	2	Median	399690000	204790000	194890000	0	0	0	0	0	0	128730000	76787000	51948000	270950000	128010000	142950000	53252	1190	50155	322018;322019;322020	433705;433706;433707	433707			3	
VARPLPAEEPER	0	Unmodified	1362.7256	0.72556306	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			21.773	20.536	3	0.00069974	16760	160511_QHF_FH_JSI10i_3	61.03	50.124			1.1318	1.0907	14.102	2	0	Median	1.486	1.2051	NaN	1	0	Median	0.86203	0.9872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	294270000	142150000	152120000	182720000	83199000	99521000	111550000	58954000	52601000	0	0	0	0	0	0	53253	1273	50156	322021;322022	433708;433709	433708			2	
VASAGSAISNASGER	0	Unmodified	1375.6692	0.66917039	3389	Q86YT6	MIB1	E3 ubiquitin-protein ligase MIB1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.797	19.674	2	0.0080852	16835	160511_QHF_FH_JSI11i_1	49.632	36.54			0.82165	0.78799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82165	0.78799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31068000	15697000	15371000	0	0	0	0	0	0	31068000	15697000	15371000	0	0	0	53254	3389	50157	322023	433710;433711	433710			2	
VASEAPLEHKPQVEASSPR	1	Unmodified	2031.0385	0.038517356	3716	Q8TD19	NEK9	Serine/threonine-protein kinase Nek9	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								1	2		27.552	27.091	3;4	0.008052	23304	160511_QHF_FH_JSI11i_3	40.384	30.968			1.0207	1.104	46.622	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2316	1.5352	NaN	1	1	Median	0.84591	0.79399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	106710000	62896000	43811000	0	0	0	40409000	19807000	20602000	66298000	43089000	23209000	0	0	0	53255	3716	50158	322024;322025;322026	433712;433713;433714	433712			3	
VASFSIPGSSSR	0	Unmodified	1193.6041	0.60405094	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			47.945	46.379	2	0.0082528	38748	160511_QHF_FH_JSI10i_3	50.194	35.528			1.1041	1.2588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1041	1.2588	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33881000	15170000	18711000	0	0	0	33881000	15170000	18711000	0	0	0	0	0	0	53256	2547	50159	322027	433715	433715			1	
VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR	0	Unmodified	3118.5796	0.57957411	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0.816	2	2	2							1	1	4		63.444	63.062	3;4	5.4426E-33	56103	160511_QHF_FH_JSI11i_3	137.44	134.75			1.1708	1.1177	16.24	5	1	Median	1.5346	1.3223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0634	1.0286	13.711	4	1	Median	NaN	NaN	NaN	0	0	Median	280960000	139930000	141030000	59042000	27337000	31704000	0	0	0	221920000	112600000	109330000	0	0	0	53257	2573	50160	322028;322029;322030;322031;322032;322033	433716;433717;433718;433719;433720;433721;433722;433723;433724	433717			8	
VASHTPSLLR	0	Unmodified	1079.6087	0.60874239	1868	P55957	BID	BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		23.719	22.861	3	0.0031623	18949	160511_QHF_FH_JSI10i_3	32.677	15.683			0.91115	0.7619	25.156	3	0	Plateau	0.94653	0.7619	NaN	1	0	Median	0.79695	0.9181	NaN	1	0	Median	0.58432	0.55802	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	197750000	109540000	88204000	96234000	51479000	44755000	75080000	39976000	35104000	26434000	18089000	8344700	0	0	0	53258	1868	50161	322034;322035;322036	433725	433725			1	
VASHWQQLMLK	1	Unmodified	1339.7071	0.70707622	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		53.43	52.386	3	0.00099392	46009	160511_QHF_FH_JSI11i_3	64.439	56.039			0.74355	0.70557	84.986	3	3	Median	0.74355	0.60305	NaN	1	1	Median	0.60994	0.70557	NaN	1	1	Median	3.0262	2.8249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	136510000	51216000	85299000	38580000	20395000	18185000	24288000	14060000	10229000	73646000	16761000	56885000	0	0	0	53259	591	50162	322037;322038;322039	433726;433727;433728	433726			3	
VASLEESEGNK	1	Unmodified	1161.5513	0.55134667	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	17.506	14.119	2	6.2537E-13	12126	160511_QHF_FH_JSI12i_1	144.77	90.803			0.98871	1.0914	13.706	7	0	Median	1.6405	1.3396	NaN	1	0	Median	0.84749	0.99486	1.2736	2	0	Median	1.0708	1.0441	14.562	2	0	Median	1.0984	1.1898	12.201	2	0	Median	3644200000	1887200000	1757100000	688380000	325340000	363040000	1081400000	600820000	480630000	1006200000	500220000	506020000	868180000	460800000	407380000	53260	2252	50163	322040;322041;322042;322043;322044;322045;322046	433729;433730;433731;433732;433733;433734;433735;433736	433731			8	
VASLEEVPFAAASIGQVHQGLLR	0	Unmodified	2391.291	0.29104365	4022	Q96D53	ADCK4	AarF domain-containing protein kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		95.42	95.283	3	2.3284E-17	85041	160511_QHF_FH_JSI11i_3	137.09	128.38			1.1615	1.1043	8.8993	3	0	Median	1.3011	1.1409	NaN	1	0	Median	0.81023	0.96465	NaN	1	0	Median	1.1615	1.1043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	96850000	49984000	46866000	17781000	8167200	9613400	18026000	9219700	8806000	61044000	32597000	28447000	0	0	0	53261	4022	50164	322047;322048;322049;322050	433737;433738;433739;433740;433741;433742	433738			6	
VASLLVK	1	Unmodified	728.47963	0.47962569	772;4954	P00492;Q9NRG1	HPRT1;PRTFDC1	Hypoxanthine-guanine phosphoribosyltransferase;Phosphoribosyltransferase domain-containing protein 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	34.935	34.033	2	0.055159	28742	160511_QHF_FH_JSI11i_2	41.892	12.994			0.941	1.0454	4.5159	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84976	1.0588	NaN	1	0	Median	0.941	0.97368	NaN	1	0	Median	0.94585	1.0454	NaN	1	0	Median	1437600000	736080000	701510000	0	0	0	386920000	200020000	186890000	665570000	327730000	337840000	385110000	208330000	176780000	53262	772;4954	50165	322051;322052;322053	433743	433743			1	
VASMAPVTAEGFQER	0	Unmodified	1591.7664	0.7664416	3947	Q969S3	ZNF622	Zinc finger protein 622	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	52.219	51.429	2	2.9904E-05	45634	160511_QHF_FH_JSI9i_1	122.33	107.06			1.291	1.1769	31.525	9	5	Median	1.9155	1.6205	60.021	2	1	Median	1.2053	1.4301	39.587	2	1	Median	1.0611	1.0457	18.896	3	2	Median	1.3145	1.4017	24.725	2	1	Median	511460000	225190000	286270000	135100000	52569000	82530000	109170000	53684000	55488000	182290000	77276000	105010000	84900000	41658000	43242000	53263	3947	50166	322054;322055;322056;322057;322058;322059;322060;322061;322062	433744;433745;433746;433747;433748;433749;433750;433751;433752;433753;433754;433755;433756	433752			13	
VASMPQEEQELVVTIPK	1	Unmodified	1896.9867	0.98666471	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	75.285	74.781	3	0.0010306	68093	160511_QHF_FH_JSI12i_1	59.434	48.8			0.71236	0.72286	23.963	5	5	Median	0.71236	0.58276	NaN	1	1	Median	0.85396	0.96617	NaN	1	1	Median	1.0478	0.98808	NaN	1	1	Median	0.64397	0.6795	8.7469	2	2	Median	114240000	53652000	60590000	15381000	8136100	7244800	32093000	11713000	20380000	23609000	8710400	14898000	43159000	25092000	18067000	53264	1259	50167	322063;322064;322065;322066;322067	433757;433758;433759;433760;433761	433758			5	
VASPALR	0	Unmodified	712.42317	0.42317345	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.67	0.471	1	2									1	1	1	16.084	15.494	2	0.02555	13108	160511_QHF_FH_JSI10i_2	54.525	28.416			0.9984	1.0404	14.917	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68928	0.8331	NaN	1	0	Median	1.0667	1.0404	NaN	1	0	Median	0.9984	1.1062	NaN	1	0	Median	299680000	166480000	133190000	0	0	0	120550000	77124000	43428000	53377000	22976000	30401000	125750000	66384000	59364000	53265	439	50168	322068;322069;322070	433762;433763	433763			2	
VASPDAVTTITSSK	1	Unmodified	1375.7195	0.71947463	5005	Q9NUL7	DDX28	Probable ATP-dependent RNA helicase DDX28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	42.295	41.828	2	8.5155E-05	37042	160511_QHF_FH_JSI9i_1	73.848	58.697			0.71252	0.6864	26.564	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.97834	1.1384	NaN	1	1	Median	0.70835	0.6864	NaN	1	0	Median	0.96065	1.0173	NaN	1	1	Median	151780000	70625000	81160000	0	0	0	41418000	17992000	23426000	60270000	30959000	29310000	50096000	21673000	28423000	53266	5005	50169	322071;322072;322073;322074;322075;322076	433764;433765;433766;433767;433768;433769;433770	433769			7	
VASQGEVVR	0	Unmodified	943.50869	0.50869399	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.595	10.211	2	0.011185	7757	160511_QHF_FH_JSI9i_1	49.097	18.485			0.73642	0.78988	7.3934	4	0	Median	1.0556	0.84533	NaN	1	0	Median	0.66862	0.79712	NaN	1	0	Median	0.80361	0.78271	NaN	1	0	Median	0.67485	0.7077	NaN	1	0	Median	1001400000	531390000	470060000	244330000	111960000	132370000	263260000	151880000	111380000	262050000	142320000	119720000	231820000	125220000	106600000	53267	878	50170	322077;322078;322079;322080	433771;433772;433773	433773			3	
VASQGEVVRK	1	Unmodified	1071.6037	0.60365701	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.46	6.13		3	5					4	1	4	3	4	2	8.9827	5.3536	2;3	7.949E-05	5763	160511_QHF_FH_JSI10i_2	101.97	67.721			1.025	1.05	16.931	13	0	Median	1.3411	1.1343	14.295	4	0	Median	0.9572	1.1622	23.234	3	0	Median	1.0115	0.98841	9.1548	4	0	Median	0.96883	1.0212	3.9387	2	0	Median	3285700000	1670800000	1614900000	276440000	130210000	146230000	430180000	189510000	240660000	2323800000	1197500000	1126300000	255240000	153540000	101700000	53268	878	50171	322081;322082;322083;322084;322085;322086;322087;322088;322089;322090;322091;322092;322093	433774;433775;433776;433777;433778;433779;433780;433781;433782;433783;433784;433785;433786;433787;433788;433789;433790;433791;433792;433793	433788			20	
VASSDLVNMGISVVSYTLK	1	Unmodified	1982.0394	0.039428559	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	6.67	6.6		2							1	1		1	1	100.34	97.223	3	0.0016498	50075	160513_QHF_FH_JSI9Kac_6	65.25	51.209			0.82296	0.82926	22.642	3	1	Median	0.96832	0.83471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82296	0.82926	NaN	1	0	Median	0.51927	0.56209	NaN	1	0	Median	178400000	101800000	76601000	49312000	20406000	28906000	0	0	0	71791000	43780000	28011000	57298000	37614000	19684000	53269	590	50172	322094;322095;322096	433794;433795	433795			1	
VASSPVMVSNPATR	0	Unmodified	1414.7238	0.7238485	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.6	4	6					1			3	2	3	3	38.96	37.222	2	4.1457E-05	33357	160511_QHF_FH_JSI10i_1	121.02	108.45			1.0448	1.0326	30.514	11	5	Median	1.1057	0.97545	54.324	3	3	Median	0.92018	1.1065	28.603	2	0	Median	1.2835	1.2734	18.886	3	0	Median	0.97486	1.0121	7.1152	3	2	Plateau	709090000	334350000	374750000	106110000	58381000	47730000	187260000	81706000	105550000	206960000	97355000	109610000	208760000	96905000	111850000	53270	1743	50173	322097;322098;322099;322100;322101;322102;322103;322104;322105;322106;322107	433796;433797;433798;433799;433800;433801;433802;433803;433804;433805;433806;433807;433808;433809;433810	433802			15	
VASSSLGMGPQHAMQTAER	0	Unmodified	1956.9146	0.91457917	745	O95985	TOP3B	DNA topoisomerase 3-beta-1	yes	yes	0	0	0	0		By MS/MS			2.5	0.5		1	1								2			37.839	36.62	3	0.006783	32244	160511_QHF_FH_JSI10i_2	53.453	43.665			0.23594	0.27651	35.328	2	2	Median	NaN	NaN	NaN	0	0	Median	0.23594	0.27651	35.328	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26373000	21128000	5245500	0	0	0	26373000	21128000	5245500	0	0	0	0	0	0	53271	745	50174	322108;322109	433811;433812	433812			2	
VASSTLLDDRR	0	Unmodified	1231.6521	0.65206377	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	8.45	6.36		2	4					3	2	5	2	3	1	27.718	22.957	2;3	0.0072629	19589	160511_QHF_FH_JSI9i_2	66.692	31.397			0.93956	0.89372	48.219	11	4	Median	1.1164	0.94605	31.478	5	3	Median	0.35952	0.41177	91.405	2	1	Median	0.93956	0.90613	15.969	3	0	Median	0.8117	0.88729	NaN	1	0	Median	369050000	199450000	169600000	85841000	42192000	43649000	164880000	96862000	68014000	115100000	58749000	56350000	3236700	1650400	1586400	53272	446	50175	322110;322111;322112;322113;322114;322115;322116;322117;322118;322119;322120	433813;433814;433815;433816;433817;433818;433819;433820	433817			8	
VASTSQEYDK	1	Unmodified	1126.5142	0.51423288	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.2186	8.7721	2	0.0030977	6709	160511_QHF_FH_JSI12i_1	70.908	41.759			1.9196	1.6006	10.984	3	3	Plateau	2.0053	1.6006	NaN	1	1	Median	1.3084	1.5532	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7698	1.9037	NaN	1	1	Median	120950000	41000000	79949000	40102000	12091000	28011000	37419000	13148000	24271000	0	0	0	43428000	15761000	27667000	53273	229	50176	322121;322122;322123;322124	433821;433822;433823;433824	433822			4	
VASVAENK	1	Unmodified	816.43413	0.43413207	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	7.6892	5.956	2	0.0033437	4807	160511_QHF_FH_JSI10i_1	73.26	19.103			0.87556	1.0112	90.344	5	1	Median	0.17853	0.15283	NaN	1	1	Median	0.87556	1.0112	NaN	1	0	Median	1.3173	1.2937	12.233	2	0	Median	0.85122	0.90586	NaN	1	0	Median	7775600000	5454000000	2321600000	4008700000	3290100000	718620000	1228400000	783540000	444880000	1296800000	660000000	636840000	1241600000	720330000	521270000	53274	3503	50177	322125;322126;322127;322128;322129	433825;433826;433827;433828;433829	433828			5	
VASVDSAVAATTPTSMATVQK	1	Unmodified	2034.0303	0.030320435	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	58.121	57.581	3	0.04226	52256	160511_QHF_FH_JSI11i_1	33.45	28.133			1.3997	1.4105	15.652	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.611	1.5756	NaN	1	0	Median	1.2162	1.2627	NaN	1	0	Median	105160000	49970000	55192000	0	0	0	0	0	0	56916000	23702000	33214000	48246000	26268000	21978000	53275	4002	50178	322130;322131	433830	433830			0	
VASVEMVK	1	Unmodified	861.46299	0.46298935	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		25.811	25.635	2	0.028322	22528	160511_QHF_FH_JSI11i_1	50.703	20.091			1.7311	1.6898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7311	1.6898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53751000	20991000	32760000	0	0	0	0	0	0	53751000	20991000	32760000	0	0	0	53276	900	50179	322132	433831	433831			1	
VASVLGTMEMGR	0	Unmodified	1249.6159	0.61587795	338	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		58.267	57.471	2	0.00020848	50849	160511_QHF_FH_JSI10i_2	79.974	60.88			1.5811	1.5298	2.0834	3	0	Median	1.7545	1.5298	NaN	1	0	Median	1.2548	1.5042	NaN	1	0	Median	1.5811	1.5678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	485070000	217190000	267870000	124220000	46912000	77310000	152660000	78711000	73946000	208190000	91571000	116620000	0	0	0	53277	338	50180	322133;322134;322135	433832;433833;433834;433835;433836	433836			5	
VASVSQNAIVSAAGNIAR	0	Unmodified	1726.9326	0.93259572	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.96	0.751	7	10	6							5	7	6	5	65.404	64.604	2;3	4.6454E-66	57405	160511_QHF_FH_JSI11i_3	210.14	181.43			0.87296	0.89692	15.335	21	7	Median	1.1419	0.95318	23.663	5	3	Median	0.79347	0.96319	15.214	6	2	Median	0.85641	0.83931	8.9941	5	1	Median	0.81353	0.91775	5.6999	5	1	Median	1603400000	847300000	756120000	452210000	206960000	245250000	429910000	247640000	182270000	411950000	226350000	185600000	309350000	166350000	143010000	53278	558	50181	322136;322137;322138;322139;322140;322141;322142;322143;322144;322145;322146;322147;322148;322149;322150;322151;322152;322153;322154;322155;322156;322157;322158	433837;433838;433839;433840;433841;433842;433843;433844;433845;433846;433847;433848;433849;433850;433851;433852;433853;433854;433855;433856;433857;433858;433859;433860;433861;433862;433863;433864;433865;433866;433867;433868;433869;433870;433871	433838			35	
VASYSGTVTQATFTR	0	Unmodified	1587.7893	0.78928553	2995	Q5VWN6	FAM208B	Protein FAM208B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	0.495							3	4		1	2	3	1	54.566	43.914	2	0.00082482	24472	160513_QHF_FH_JSI10Kac_4	79.693	69.461			0.99859	1.03	7.6788	6	0	Median	1.1677	0.99369	NaN	1	0	Median	0.82199	0.97024	11.716	2	0	Median	1.1012	1.0812	5.7375	2	0	Median	0.92427	1.0219	NaN	1	0	Median	32172000	17147000	15025000	4975800	2433800	2542100	10674000	6363500	4310200	10622000	5510600	5111800	5900100	2839200	3060900	53279	2995	50182	322159;322160;322161;322162;322163;322164;322165	433872;433873;433874;433875;433876;433877;433878;433879	433874			8	
VATAQDDITGDGTTSNVLIIGELLK	1	Unmodified	2543.333	0.33302762	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.71	101.6	2;3	0	92322	160511_QHF_FH_JSI11i_1	413.84	395.42			0.89635	0.92627	13.02	8	1	Median	1.0275	0.8368	28.558	2	1	Median	0.76075	0.89429	3.4867	2	0	Median	0.9807	0.95797	9.6503	2	0	Median	0.89717	0.95887	3.4073	2	0	Median	5667000000	2962100000	2704800000	570010000	278530000	291470000	1835100000	1048700000	786400000	1771100000	905450000	865670000	1490800000	729450000	761300000	53280	1494	50183	322166;322167;322168;322169;322170;322171;322172;322173	433880;433881;433882;433883;433884;433885;433886;433887;433888;433889;433890;433891;433892	433881			13	
VATGQELSNNILDTVFK	1	Unmodified	1847.9629	0.9628928	3473	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	3	1	1	98.542	98.435	2;3	9.8006E-06	86416	160511_QHF_FH_JSI11i_2	97.69	73.435			0.82695	0.93048	24.505	6	4	Median	1.4062	1.2189	NaN	1	1	Median	0.74965	0.92153	30.832	3	3	Median	0.7795	0.76558	NaN	1	0	Median	0.87729	0.93952	NaN	1	0	Median	86414000	51523000	34891000	14458000	4613600	9843900	46190000	32886000	13303000	12979000	7914400	5064400	12788000	6108800	6679200	53281	3473	50184	322174;322175;322176;322177;322178;322179	433893;433894;433895;433896;433897;433898;433899;433900;433901	433900			9	
VATHEKEWK	2	Acetyl (K)	1168.5877	0.58767259	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.5	0.499								7	6	2	4	4	3	25.399	16.66	2;3	0.00057982	9258	160513_QHF_FH_JSI12Kac_6	79.974	66.382			0.83502	0.8948	57.531	11	2	Median	0.42488	0.36333	132	2	1	Median	0.76624	0.90378	6.9121	3	1	Plateau	0.90442	0.88992	32.649	4	0	Median	0.883	0.95617	9.3815	2	0	Median	194100000	100290000	93806000	20158000	9842600	10316000	56548000	30817000	25730000	61406000	31771000	29635000	55984000	27858000	28126000	53282	1743	50185	322180;322181;322182;322183;322184;322185;322186;322187;322188;322189;322190;322191;322192	433902;433903;433904;433905;433906;433907;433908;433909;433910;433911;433912;433913;433914;433915;433916;433917;433918;433919;433920	433918	1758		19	
VATLNSEEESDPPTYK	1	Unmodified	1778.821	0.82103917	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	1	3	2	40.962	36.672	2;3	1.345E-208	32982	160511_QHF_FH_JSI11i_1	325.12	293.28			1.0141	0.96657	13.755	7	2	Median	1.1663	0.96	NaN	1	0	Median	0.83657	0.96657	NaN	1	0	Median	0.96572	0.93917	16.981	3	1	Median	1.0679	1.1613	5.1222	2	1	Median	1052200000	560720000	491430000	169480000	78540000	90936000	313130000	180490000	132640000	302660000	170890000	131770000	266900000	130800000	136090000	53283	2147	50186	322193;322194;322195;322196;322197;322198;322199	433921;433922;433923;433924;433925;433926;433927;433928;433929;433930;433931	433922			11	
VATMLATGGNR	0	Unmodified	1089.5601	0.56007764	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	25.47	24.696	2	1.7448E-07	20630	160511_QHF_FH_JSI11i_2	123.21	96.078			1.0404	1.1111	33.194	8	0	Median	1.0104	0.85044	15.141	2	0	Median	1.1382	1.3654	28.874	2	0	Median	0.84571	0.8347	57.528	2	0	Median	1.0428	1.1194	1.333	2	0	Median	1267900000	608880000	658980000	202880000	99460000	103420000	228140000	99548000	128590000	416610000	201750000	214870000	420230000	208130000	212100000	53284	4694	50187	322200;322201;322202;322203;322204;322205;322206;322207	433932;433933;433934;433935;433936;433937;433938;433939;433940;433941	433938			10	
VATMLATGGNR	0	Oxidation (M)	1105.555	0.55499226	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	26.01	24.751	2	0.017597	20657	160511_QHF_FH_JSI12i_2	52.49	42.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53285	4694	50187	322208	433942	433942		2515	1	
VATNIMR	0	Unmodified	803.43236	0.43235793	200	O14770;A6NDR6;A8K0S8;Q99687;O00470	MEIS2;MEIS3P1;MEIS3P2;MEIS3;MEIS1	Homeobox protein Meis2;Putative homeobox protein Meis3-like 1;Putative homeobox protein Meis3-like 2;Homeobox protein Meis3;Homeobox protein Meis1	yes	no	0	0	0	0		By MS/MS			2	0		1									1			13.311	12.72	2	0.042081	10436	160511_QHF_FH_JSI10i_2	46.351	3.3509			0.51874	0.63708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.51874	0.63708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	566610000	369670000	196940000	0	0	0	566610000	369670000	196940000	0	0	0	0	0	0	53286	200	50188	322209	433943	433943			1	
VATNPSFDGR	0	Unmodified	1062.5094	0.50942227	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By matching	1	0	4									1	1	1	1	21.909	21.382	2	0.012464	18225	160511_QHF_FH_JSI9i_1	52.255	38.877			1.0652	1.0903	7.0761	4	0	Median	1.321	1.0836	NaN	1	0	Median	1.0122	1.1664	NaN	1	0	Median	1.121	1.0969	NaN	1	0	Median	0.92038	0.98307	NaN	1	0	Median	369250000	184780000	184470000	92675000	44847000	47828000	85677000	45538000	40139000	84662000	42723000	41939000	106230000	51671000	54563000	53287	3667	50189	322210;322211;322212;322213	433944;433945	433944			2	
VATPLPDPMASR	0	Unmodified	1253.6438	0.64380726	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			56.386	55.991	2	0.0024736	50482	160511_QHF_FH_JSI10i_1	70.399	52.087			1.2522	1.467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2522	1.467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250530000	167270000	83265000	0	0	0	250530000	167270000	83265000	0	0	0	0	0	0	53288	2493	50190	322214	433946	433946			1	
VATPPNQNQK	1	Unmodified	1095.5673	0.5672715	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.2292	7.8798	2	5.2829E-05	5814	160511_QHF_FH_JSI12i_1	92.439	68.484			0.91538	0.89665	9.9797	4	3	Median	1.0802	0.88584	NaN	1	1	Median	0.90586	1.063	NaN	1	1	Median	0.92501	0.9076	NaN	1	1	Median	0.82461	0.84421	NaN	1	0	Median	491030000	295600000	195430000	138570000	91105000	47461000	107690000	59090000	48603000	127710000	73048000	54664000	117060000	72354000	44707000	53289	3074	50191	322215;322216;322217;322218	433947;433948;433949;433950	433948			4	
VATPPPSVLQLNK	1	Unmodified	1362.7871	0.78710068	3024	Q68CZ2	TNS3	Tensin-3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				58.462	57.325	2	0.0046874	50924	160511_QHF_FH_JSI9i_1	54.486	37.461			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53290	3024	50192	322219	433951	433951			1	
VATPVDWK	1	Unmodified	914.48617	0.48616764	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	42.275	41.468	2	0.0028104	37718	160511_QHF_FH_JSI12i_1	77.282	52.284			0.85601	0.89134	37.395	8	0	Median	1.816	1.5194	50.666	2	0	Median	0.61158	0.73517	16.994	2	0	Median	0.79808	0.79309	9.977	2	0	Median	0.97434	1.0593	17.872	2	0	Median	1383400000	754960000	628400000	222980000	90873000	132110000	337800000	198250000	139540000	527540000	299120000	228420000	295050000	166720000	128330000	53291	1333	50193	322220;322221;322222;322223;322224;322225;322226;322227	433952;433953;433954;433955;433956;433957;433958;433959;433960	433955			9	
VATQAVEDVLNIAK	1	Unmodified	1469.809	0.80895834	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	81.46	80.83	2	7.0055E-25	73678	160511_QHF_FH_JSI11i_1	158.04	122.53			0.95672	0.78639	18.617	6	1	Plateau	0.944	0.81212	NaN	1	0	Median	0.58025	0.70431	11.035	2	1	Median	0.95672	0.98251	NaN	1	0	Median	0.76205	0.82053	29.148	2	0	Median	319210000	163250000	155960000	59229000	24740000	34489000	76830000	48800000	28031000	94077000	42884000	51193000	89077000	46826000	42250000	53292	2832	50194	322228;322229;322230;322231;322232;322233;322234	433961;433962;433963;433964;433965;433966;433967;433968	433961			8	
VATTAGLYGSNLMEHTEIDHWLEFSATK	1	Unmodified	3120.4863	0.48625058	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	2	3	4	100.61	100.53	3;4	1.0781E-82	89544	160511_QHF_FH_JSI11i_3	225.84	213.49			0.8946	0.89895	18.132	10	2	Median	1.1393	0.99912	NaN	1	0	Median	0.96656	1.1357	19.501	2	0	Median	0.91457	0.92123	3.8807	3	0	Plateau	0.73031	0.77293	15.112	4	2	Median	2464400000	1330600000	1133700000	132530000	70089000	62445000	230940000	131500000	99440000	640720000	346410000	294310000	1460200000	782640000	677520000	53293	878	50195	322235;322236;322237;322238;322239;322240;322241;322242;322243;322244	433969;433970;433971;433972;433973;433974;433975;433976;433977;433978;433979;433980;433981;433982;433983;433984;433985;433986;433987;433988;433989	433970			21	
VATTAGLYGSNLMEHTEIDHWLEFSATK	1	Oxidation (M)	3136.4812	0.4811652	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	0			By matching	By MS/MS	3	0			2									1	1	89.19	89.146	4	1.8562E-14	77264	160511_QHF_FH_JSI12i_3	88.595	82.3			0.91438	0.89199	0.50187	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97911	0.89517	NaN	1	0	Median	0.85393	0.88883	NaN	1	0	Median	186250000	107910000	78343000	0	0	0	0	0	0	51657000	28808000	22849000	134590000	79100000	55494000	53294	878	50195	322245;322246	433990;433991;433992	433991		437	3	
VATTTFITLSR	0	Unmodified	1208.6765	0.6764876	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		69.512	59.998	2	0.03621	32520	160513_QHF_FH_JSI11Kac_6	50.292	39.141			0.7258	0.6879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7258	0.6879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17464000	9427300	8037100	0	0	0	0	0	0	17464000	9427300	8037100	0	0	0	53295	4580	50196	322247	433993	433993			1	
VATVLATDADSGK	1	Unmodified	1246.6405	0.64049603	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5	5.66	2					1					1	2		33.807	30.593	2	0.0006386	27194	160511_QHF_FH_JSI10i_1	85.288	64.387			0.84391	1.6215	75.675	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.5101	1.7194	NaN	1	1	Median	0.89505	0.85483	90.541	2	2	Median	NaN	NaN	NaN	0	0	Median	69195000	39048000	30147000	0	0	0	34845000	20433000	14412000	34350000	18614000	15736000	0	0	0	53296	401	50197	322248;322249;322250	433994;433995;433996	433996			3	
VATVSLPR	0	Unmodified	841.50215	0.50215205	47	CON__P00761			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.44	10	6	4		2	2	5	6	4	9	11	9	10	44.278	39.074	1;2	9.6129E-07	6686	160513_QHF_FH_JSI9Kac_3	137.18	65.837		+	0.9702	1.0138	26.439	38	7	Median	0.94798	0.8984	23.04	9	2	Median	0.97072	1.0635	27.484	10	2	Median	1.1036	1.0517	22.782	9	0	Median	0.90257	0.93581	30.718	10	3	Median	154170000000	74678000000	79496000000	41817000000	20874000000	20943000000	31916000000	15166000000	16749000000	41035000000	18821000000	22214000000	39406000000	19817000000	19589000000	53297	47	50198	322251;322252;322253;322254;322255;322256;322257;322258;322259;322260;322261;322262;322263;322264;322265;322266;322267;322268;322269;322270;322271;322272;322273;322274;322275;322276;322277;322278;322279;322280;322281;322282;322283;322284;322285;322286;322287;322288;322289	433997;433998;433999;434000;434001;434002;434003;434004;434005;434006;434007;434008;434009;434010;434011;434012;434013;434014;434015;434016;434017;434018;434019;434020;434021;434022;434023;434024;434025;434026;434027;434028;434029;434030;434031;434032;434033;434034;434035;434036;434037;434038;434039;434040;434041;434042;434043;434044;434045;434046;434047;434048;434049;434050;434051;434052;434053;434054;434055;434056;434057;434058;434059;434060;434061;434062;434063;434064;434065;434066;434067;434068;434069;434070;434071;434072;434073;434074;434075;434076;434077;434078;434079;434080;434081;434082;434083;434084;434085;434086;434087;434088;434089	434041			92	
VATWFNQPAR	0	Unmodified	1188.604	0.60399136	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.99	1	5	4						1	2	4	2	3	48.397	46.766	2	2.085E-07	38347	160511_QHF_FH_JSI9i_3	116.73	96.939			0.83711	0.88056	21.019	10	3	Median	1.3496	1.111	8.9142	2	0	Median	0.87122	1.0251	24.76	4	2	Median	0.83711	0.84407	0.22471	2	0	Median	0.74022	0.78664	11.597	2	1	Median	6445000000	3408400000	3036500000	2021700000	898850000	1122800000	2136300000	1162800000	973460000	1320400000	806300000	514060000	966620000	540420000	426200000	53298	1275	50199	322290;322291;322292;322293;322294;322295;322296;322297;322298;322299;322300	434090;434091;434092;434093;434094;434095;434096;434097;434098;434099;434100;434101;434102;434103;434104;434105;434106	434096			17	
VATWFNQPARK	1	Unmodified	1316.699	0.69895438	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	1	3		1	42.025	35.973	2;3	0.0089798	19913	160513_QHF_FH_JSI10Kac_6	38.783	23.395			1.041	1.2259	24.54	5	2	Median	1.4357	1.2259	NaN	1	0	Median	0.78439	0.91802	33.704	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1.0053	1.0983	NaN	1	0	Median	188980000	101550000	87433000	21642000	10957000	10685000	161820000	88448000	73377000	0	0	0	5515600	2144800	3370800	53299	1275	50200	322301;322302;322303;322304;322305	434107;434108;434109;434110	434110			4	
VATWVDETLSSVASK	1	Unmodified	1591.8094	0.80935227	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.944	79.792	2	0.00070359	68976	160511_QHF_FH_JSI12i_2	86.288	66.257			0.11494	0.12469	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11494	0.12469	NaN	1	1	Median	12542000	11369000	1173100	0	0	0	0	0	0	0	0	0	12542000	11369000	1173100	53300	641	50201	322306	434111	434111			1	
VAVAIPNRPPDAVLTDTTSLNQAALYR	0	Unmodified	2865.5349	0.53485575	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.653	2	8	5							3	5	3	4	87.55	87.007	3;4	1.2264E-41	75655	160511_QHF_FH_JSI12i_3	176.53	164.67			1.0372	1.1044	13.998	15	2	Median	1.5216	1.2436	14.934	3	0	Median	0.87848	1.0778	7.4207	5	1	Median	1.1443	1.1044	5.412	3	0	Median	1.1073	1.042	15.82	4	1	Linear	1317000000	611970000	705050000	277100000	114400000	162700000	372410000	179760000	192640000	352520000	159130000	193390000	314990000	158670000	156310000	53301	1747	50202	322307;322308;322309;322310;322311;322312;322313;322314;322315;322316;322317;322318;322319;322320;322321	434112;434113;434114;434115;434116;434117;434118;434119;434120;434121;434122;434123;434124;434125;434126;434127;434128;434129;434130;434131;434132;434133;434134;434135;434136;434137;434138;434139;434140;434141;434142	434142			31	
VAVATPAK	1	Unmodified	755.45414	0.45413923	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.42	4	2	3			2	2			4	3	3	3	17.901	14.359	2	0.0025673	12784	160511_QHF_FH_JSI9i_1	79.116	53.007			1.0167	1.0748	10.628	13	0	Median	1.3523	1.1303	3.7112	4	0	Median	0.8213	1.1101	10.262	3	0	Plateau	1.0855	1.0748	10.007	3	0	Median	0.86809	0.92258	0.70864	3	0	Median	11813000000	5905800000	5906800000	3089800000	1341600000	1748200000	3160300000	1724800000	1435500000	2765700000	1341900000	1423800000	2796800000	1497500000	1299300000	53302	1154	50203	322322;322323;322324;322325;322326;322327;322328;322329;322330;322331;322332;322333;322334	434143;434144;434145;434146;434147;434148;434149;434150;434151;434152;434153;434154;434155;434156;434157;434158;434159;434160	434156			18	
VAVATPAKK	2	Unmodified	883.5491	0.54910224	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.07	1	7	8				1	4	3	6	7	6	5	12.639	9.5271	2;3	7.3244E-05	7844	160511_QHF_FH_JSI12i_3	73.985	42.911			0.99631	0.99094	18.769	24	1	Median	1.1709	0.97432	10.038	6	0	Median	0.97385	1.185	26.499	7	1	Median	1.0086	1.0124	9.1414	6	0	Median	0.90949	0.92782	13.652	5	0	Median	11080000000	5603400000	5476600000	1445600000	574550000	871070000	1807900000	842030000	965860000	3010800000	1601100000	1409700000	4815700000	2585600000	2230000000	53303	1154	50204	322335;322336;322337;322338;322339;322340;322341;322342;322343;322344;322345;322346;322347;322348;322349;322350;322351;322352;322353;322354;322355;322356;322357;322358	434161;434162;434163;434164;434165;434166;434167;434168;434169;434170;434171;434172;434173;434174;434175;434176;434177;434178;434179;434180;434181;434182;434183;434184	434182			24	
VAVEEVDEEGK	1	Unmodified	1202.5667	0.56666238	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.3	6	4	2	1	3	4				3	6	6	5	28.98	24.52	2	3.1811E-11	15202	160513_QHF_FH_JSI11Kac_3	140.17	126.58			0.91322	0.91107	37.235	19	9	Median	1.227	0.91107	8.4991	3	1	Plateau	0.63652	0.75892	18.161	5	3	Median	0.95332	0.93551	57.717	6	2	Median	0.80224	0.87656	39.431	5	3	Median	23024000000	11593000000	11431000000	3429500000	1661200000	1768300000	8187800000	4329500000	3858400000	3749700000	1684900000	2064800000	7656500000	3917400000	3739100000	53304	791	50205	322359;322360;322361;322362;322363;322364;322365;322366;322367;322368;322369;322370;322371;322372;322373;322374;322375;322376;322377;322378	434185;434186;434187;434188;434189;434190;434191;434192;434193;434194;434195;434196;434197;434198;434199;434200;434201;434202;434203;434204;434205;434206;434207;434208;434209;434210;434211	434194			27	
VAVEYLDPSPEVQK	1	Unmodified	1572.8035	0.80353861	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.29	5.75	9					5				2	4	3	5	61.73	58.173	2;3	4.7178E-17	52887	160511_QHF_FH_JSI12i_1	131.43	107.83			0.96335	0.95139	26.406	12	3	Median	1.087	0.88648	0.54908	2	0	Median	0.86312	1.0074	17.266	3	1	Plateau	0.97182	0.9569	26.786	3	0	Median	0.93239	0.97463	36.956	4	2	Median	1451100000	764670000	686430000	373550000	172250000	201300000	369210000	223030000	146180000	339360000	173660000	165700000	368980000	195720000	173260000	53305	359	50206	322379;322380;322381;322382;322383;322384;322385;322386;322387;322388;322389;322390;322391;322392	434212;434213;434214;434215;434216;434217;434218;434219;434220;434221;434222;434223;434224;434225;434226;434227;434228;434229;434230;434231;434232	434218			20	
VAVEYLDPSPEVQKK	2	Unmodified	1700.8985	0.89850163	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	50.246	49.413	3	3.2527E-05	42332	160511_QHF_FH_JSI12i_2	96.673	83.84			1.1179	1.3857	28.869	5	3	Median	1.6981	1.4452	NaN	1	1	Median	1.1179	1.3857	NaN	1	1	Median	1.3765	1.4125	NaN	1	1	Median	0.80991	0.86825	21.644	2	0	Median	549520000	275510000	274010000	82677000	31925000	50752000	111430000	56332000	55103000	160590000	82203000	78382000	194830000	105050000	89778000	53306	359	50207	322393;322394;322395;322396;322397;322398	434233;434234;434235;434236;434237;434238	434234			6	
VAVFFGGLSIK	1	Unmodified	1136.6594	0.65938097	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.69		4	4						6	5	4	3	2	87.023	83.342	2	1.5856E-09	41850	160513_QHF_FH_JSI9Kac_6	136.57	109.31			0.8997	0.90016	14.922	14	2	Median	1.105	0.87664	15.425	5	2	Median	0.75176	0.88602	18.71	4	0	Median	1.0286	0.97145	18.004	3	0	Plateau	0.89147	0.92822	0.59862	2	0	Median	5403000000	2715400000	2687500000	1876800000	852670000	1024200000	1986700000	1113100000	873560000	770360000	351290000	419070000	769110000	398390000	370720000	53307	2474	50208	322399;322400;322401;322402;322403;322404;322405;322406;322407;322408;322409;322410;322411;322412	434239;434240;434241;434242;434243;434244;434245;434246;434247;434248;434249;434250;434251;434252;434253;434254;434255;434256;434257;434258;434259;434260;434261;434262;434263	434252			24	
VAVFFGGLSIKK	2	Unmodified	1264.7543	0.75434399	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.85	6.47			11						9	6	5	4	5	75.362	70.195	2;3	1.6214E-06	37421	160513_QHF_FH_JSI11Kac_6	106.67	95.762			0.81134	0.90391	23.052	10	10	Median	1.1954	1.0035	39.733	3	3	Plateau	0.80542	0.95242	11.891	3	3	Plateau	0.90683	0.86406	16.537	2	2	Median	0.84684	0.89312	26.843	2	2	Median	4408100000	2288500000	2119600000	1882600000	920880000	961770000	1464000000	870300000	593670000	456760000	193830000	262930000	604730000	303510000	301220000	53308	2474	50209	322413;322414;322415;322416;322417;322418;322419;322420;322421;322422;322423;322424;322425;322426;322427;322428;322429;322430;322431;322432	434264;434265;434266;434267;434268;434269;434270;434271;434272;434273;434274;434275;434276;434277;434278;434279;434280;434281;434282;434283;434284	434269			21	
VAVFTENASEVK	1	Unmodified	1292.6612	0.66123147	4546	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	1	2		43.012	42.257	2	4.4629E-05	37515	160511_QHF_FH_JSI9i_1	100.88	74.089			0.86304	0.59072	26.027	4	0	Linear	0.88117	0.73439	NaN	1	0	Median	0.84527	1.0358	NaN	1	0	Median	0.80791	0.78844	36.594	2	0	Median	NaN	NaN	NaN	0	0	Median	462230000	272870000	189370000	97491000	49133000	48358000	31561000	19389000	12172000	333180000	204340000	128840000	0	0	0	53309	4546	50210	322433;322434;322435;322436	434285;434286	434286			2	
VAVFTWHGCSVQLSGR	0	Unmodified	1802.8886	0.88862242	3917	Q92989	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.286	65.914	3	0.019732	36284	160513_QHF_FH_JSI10Kac_6	49.606	38.335			0.98364	1.1604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98364	1.1604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35009000	18096000	16913000	0	0	0	35009000	18096000	16913000	0	0	0	0	0	0	53310	3917	50211	322437	434287	434287			0	
VAVGELTDEDVK	1	Unmodified	1273.6402	0.64016167	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.629	45.951	2	0.00013389	40830	160511_QHF_FH_JSI9i_1	84.687	73.929			0.8987	0.91265	6.0971	4	0	Median	1.1794	0.95494	NaN	1	0	Median	0.7454	0.87222	NaN	1	0	Median	0.89072	0.85355	NaN	1	0	Median	0.90674	0.96066	NaN	1	0	Median	3692200000	1938000000	1754200000	894420000	432480000	461940000	1004900000	529980000	474880000	985830000	537680000	448160000	807080000	437870000	369210000	53311	1674	50212	322438;322439;322440;322441	434288;434289;434290;434291;434292;434293;434294	434294			7	
VAVGPNTVMSFYNGVR	0	Unmodified	1709.8559	0.85592531	3747	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	82.914	82.187	2	0.0010069	68877	160511_QHF_FH_JSI10i_3	58.676	36.479			1.1344	1.2422	20.782	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93589	1.0725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3751	1.4389	NaN	1	1	Median	49274000	22036000	27237000	0	0	0	11389000	5042000	6346900	0	0	0	37885000	16995000	20890000	53312	3747	50213	322442;322443	434295;434296	434295			2	
VAVIHQMK	1	Unmodified	924.52151	0.52150728	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	16.085	16.11	2;3	0.0050576	12900	160511_QHF_FH_JSI12i_3	64.803	44.248			1.4985	1.4487	18.117	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7735	1.6467	NaN	1	1	Median	1.2662	1.2745	NaN	1	1	Median	194080000	84148000	109930000	0	0	0	0	0	0	73153000	30930000	42222000	120930000	53217000	67708000	53313	3252	50214	322444;322445;322446;322447	434297;434298;434299;434300	434300			4	
VAVLDGK	1	Unmodified	700.41194	0.41194006	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	21.331	20.493	2	0.046038	17408	160511_QHF_FH_JSI9i_1	44.395	12.459			0.58654	0.54269	4.0399	2	0	Median	0.64474	0.52741	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53359	0.55842	NaN	1	0	Median	275490000	145080000	130410000	128490000	63326000	65168000	0	0	0	0	0	0	147000000	81751000	65246000	53314	3159	50215	322448;322449	434301	434301			1	
VAVLENQNK	1	Unmodified	1013.5506	0.55055881	1147	P18846	ATF1	Cyclic AMP-dependent transcription factor ATF-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	18.755	18.095	2	8.709E-05	15417	160511_QHF_FH_JSI10i_1	94.874	73.574			1.573	1.5205	28.365	6	4	Median	1.573	1.3282	21.487	2	1	Median	0.91431	1.0759	NaN	1	0	Median	1.7895	1.7507	NaN	1	1	Median	1.7197	1.8647	31.225	2	2	Median	570820000	259360000	311460000	137030000	66739000	70286000	171960000	84984000	86971000	122280000	51200000	71077000	139570000	56441000	83124000	53315	1147	50216	322450;322451;322452;322453;322454;322455	434302;434303;434304;434305;434306;434307;434308	434305			7	
VAVLGASGGIGQPLSLLLK	1	Unmodified	1792.0822	0.082220072	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.79	1	5	6						2	4	5	3	2	100.72	99.613	2;3	0	88425	160511_QHF_FH_JSI12i_3	354.94	319.03			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53316	1504	50217	322456;322457;322458;322459;322460;322461;322462;322463;322464;322465;322466;322467;322468;322469	434309;434310;434311;434312;434313;434314;434315;434316;434317;434318;434319;434320;434321;434322	434321			14	
VAVLLLAGGQGTR	0	Unmodified	1253.7456	0.74557022	2728;2813	Q16222;Q3KQV9	UAP1;UAP1L1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase;UDP-N-acetylhexosamine pyrophosphorylase-like protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.3	4.86			2					4	5	3	4	2	2	71.761	63.723	2	7.6848E-08	34497	160513_QHF_FH_JSI11Kac_6	108.43	30.097			0.98019	0.94064	29.171	10	1	Median	0.97435	0.82773	17.377	3	0	Plateau	1.0386	1.2047	31.783	3	0	Median	0.96454	0.94064	11.248	2	0	Median	0.68516	0.75429	51.456	2	1	Median	628920000	295350000	333570000	173030000	73897000	99130000	256300000	100740000	155560000	138110000	79659000	58453000	61480000	41053000	20426000	53317	2728;2813	50218	322470;322471;322472;322473;322474;322475;322476;322477;322478;322479;322480	434323;434324;434325;434326;434327;434328;434329;434330;434331;434332;434333;434334;434335;434336	434327			13	
VAVLLMDTQGAFDSQSTIK	1	Unmodified	2023.0296	0.029592154	3667	Q8NHH9	ATL2	Atlastin-2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	87.183	86.192	3	0.0011303	74489	160511_QHF_FH_JSI12i_2	49.537	32.255			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53318	3667	50219	322481	434337	434337			1	
VAVLQALASTVNR	0	Unmodified	1340.7776	0.77759863	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			80.65	77.181	2	0.00020258	65530	160511_QHF_FH_JSI9i_3	104.52	84.736			0.96244	0.96515	19.517	2	1	Median	1.3287	1.108	NaN	1	1	Median	0.69713	0.84074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41181000	23656000	17525000	13557000	4589800	8967500	27623000	19066000	8557300	0	0	0	0	0	0	53319	4064	50220	322482;322483	434338;434339	434338			1	
VAVLSQNR	0	Unmodified	885.50321	0.50321468	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6	1	4	4				1	4		3	4	4	3	20.177	16.461	2	0.0018874	14296	160511_QHF_FH_JSI11i_3	84.244	37.873			0.88599	0.98387	18.579	14	1	Median	1.3983	1.1852	13.046	3	1	Median	0.83616	0.98794	10.922	4	0	Median	0.8253	0.82903	18.906	4	0	Median	0.83791	0.8365	9.705	3	0	Plateau	1691300000	900790000	790470000	247530000	104200000	143330000	287640000	153990000	133640000	645870000	354940000	290930000	510230000	287670000	222560000	53320	4496	50221	322484;322485;322486;322487;322488;322489;322490;322491;322492;322493;322494;322495;322496;322497	434340;434341;434342;434343;434344;434345;434346;434347;434348;434349	434340			10	
VAVLSQNRTENAQK	1	Unmodified	1556.8271	0.82706802	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			16.722	15.66	3	0.025033	12652	160511_QHF_FH_JSI10i_3	35.657	20.781			1.183	1.1465	7.4974	2	0	Median	1.3647	1.0873	NaN	1	0	Median	1.0255	1.2089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150770000	73075000	77693000	94273000	49639000	44634000	56494000	23436000	33059000	0	0	0	0	0	0	53321	4496	50222	322498;322499	434350;434351;434352	434350			3	
VAVLVKPEHENR	1	Unmodified	1389.7728	0.7728476	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.018	18.816	3	0.017645	15147	160511_QHF_FH_JSI9i_3	43.382	32.17			2.2701	1.8727	NaN	1	1	Median	2.2701	1.8727	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23400000	6089900	17310000	23400000	6089900	17310000	0	0	0	0	0	0	0	0	0	53322	280	50223	322500	434353	434353			1	
VAVNDAHLLQYNHR	0	Unmodified	1648.8434	0.84338678	1130	P17931	LGALS3	Galectin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	6.06		7	15						9	9	10	7	5	41.16	38.001	2;3;4	3.9905E-52	31817	160511_QHF_FH_JSI10i_3	220.25	206.9			0.94674	0.97802	15.633	30	5	Median	1.294	1.1498	16.083	9	0	Median	0.78632	0.91731	14.935	10	4	Median	1.1465	1.003	10.288	6	1	Plateau	0.87195	0.90231	11.163	5	0	Median	9457100000	4717200000	4739900000	1978300000	823520000	1154800000	3043100000	1721900000	1321200000	2201700000	985060000	1216600000	2234100000	1186800000	1047300000	53323	1130	50224	322501;322502;322503;322504;322505;322506;322507;322508;322509;322510;322511;322512;322513;322514;322515;322516;322517;322518;322519;322520;322521;322522;322523;322524;322525;322526;322527;322528;322529;322530;322531	434354;434355;434356;434357;434358;434359;434360;434361;434362;434363;434364;434365;434366;434367;434368;434369;434370;434371;434372;434373;434374;434375;434376;434377;434378;434379;434380;434381;434382;434383;434384;434385;434386;434387;434388;434389;434390;434391;434392;434393;434394;434395;434396;434397;434398;434399;434400;434401	434362			46	
VAVPSTIHCDHLIEAQVGGEK	1	Unmodified	2259.1318	0.13176581	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	55.229	55.108	3;4	2.6852E-18	47266	160511_QHF_FH_JSI12i_3	137.09	129.28			1.0305	1.0157	27.925	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84452	0.79113	8.4962	2	0	Median	1.2299	1.2705	4.8256	2	0	Median	756710000	392790000	363910000	0	0	0	0	0	0	357440000	189120000	168330000	399260000	203680000	195590000	53324	4315	50225	322532;322533;322534;322535	434402;434403;434404;434405;434406;434407;434408;434409	434407			8	
VAVQAVQAMNR	0	Unmodified	1185.6288	0.6288259	2763	Q16774	GUK1	Guanylate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	34.265	34.265	2	0.00042625	29008	160511_QHF_FH_JSI12i_2	80.438	63.413			1.1856	1.0604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1856	1.0604	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	47784000	23953000	23831000	0	0	0	0	0	0	47784000	23953000	23831000	0	0	0	53325	2763	50226	322536;322537;322538;322539	434410;434411;434412;434413	434411			4	
VAVQGDVVR	0	Unmodified	941.52943	0.52942943	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.54	5.05	4	4	2			1	2			3	3	4	3	26.085	23.362	2	0.00059046	14584	160513_QHF_FH_JSI11Kac_4	91.853	29.136			1.0849	0.97224	22.318	13	0	Median	1.6544	1.3655	27.785	3	0	Median	1.1176	1.2401	26.844	3	0	Median	0.8632	0.8468	7.3031	4	0	Linear	1.1778	1.2524	18.384	3	0	Median	3696800000	1674600000	2022100000	736510000	270800000	465710000	877890000	436840000	441050000	858360000	440760000	417600000	1224000000	526250000	697750000	53326	878	50227	322540;322541;322542;322543;322544;322545;322546;322547;322548;322549;322550;322551;322552	434414;434415;434416;434417;434418;434419;434420;434421;434422;434423;434424;434425;434426	434419			13	
VAVSDMKK	2	Unmodified	876.47389	0.47388839	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	12.278	12.36	2;3	0.0018627	9485	160511_QHF_FH_JSI12i_3	87.323	50.302			0.47502	0.48828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47502	0.48828	NaN	1	1	Median	99634000	51120000	48513000	0	0	0	0	0	0	0	0	0	99634000	51120000	48513000	53327	1194	50228	322553;322554	434427;434428	434428			2	
VAVSLGTPIMKPEWIYK	2	Unmodified	1931.059	0.059041789	4789	Q9H8V3	ECT2	Protein ECT2	yes	yes	0	0	0	1		By matching	By matching	By MS/MS	3	0			3								1	1	1	88.11	87.696	3	0.0002156	75927	160511_QHF_FH_JSI12i_3	60.489	50.531			0.73511	0.6919	51.353	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.5394	1.8069	NaN	1	0	Median	0.90808	0.82717	NaN	1	0	Median	0.68865	0.68636	NaN	1	0	Median	84932000	49749000	35183000	0	0	0	9299200	3822700	5476500	32788000	20903000	11885000	42845000	25023000	17822000	53328	4789	50229	322555;322556;322557	434429;434430;434431	434430			3	
VAVTEGCQPSR	0	Unmodified	1202.5714	0.5713706	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		15.38	15.256	2	0.017572	12708	160511_QHF_FH_JSI11i_1	42.395	30.348			0.68091	0.66267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68091	0.66267	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	99227000	50486000	48741000	0	0	0	0	0	0	99227000	50486000	48741000	0	0	0	53329	512	50230	322558	434432;434433	434432			2	
VAVTPPGLAR	0	Unmodified	979.58147	0.581465	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	42.067	41.61	2	0.0075377	37285	160511_QHF_FH_JSI10i_1	51.346	30.864			0.82277	0.83216	1.7968	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6843	0.81335	NaN	1	0	Median	0.86258	0.84269	NaN	1	0	Median	0.82277	0.83216	NaN	1	0	Median	142950000	76866000	66084000	0	0	0	60989000	34369000	26620000	54889000	27773000	27116000	27072000	14724000	12348000	53330	1306	50231	322559;322560;322561	434434;434435	434435			2	
VAVTSSSSSSSSSSSIPSAEK	1	Unmodified	1970.928	0.92802343	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.233	28.315	2	2.0003E-17	25375	160511_QHF_FH_JSI12i_1	144.68	129.14			0.68743	0.73473	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68743	0.73473	NaN	1	0	Median	28958000	12971000	15987000	6166100	0	6166100	0	0	0	0	0	0	22792000	12971000	9821200	53331	3165	50232	322562;322563	434436;434437;434438	434437			3	
VAVTVMDVAHLAK	1	Unmodified	1352.7486	0.74860669	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	4.8	5.6		4							1	1	2	1	1	68.572	66.378	3	0.010711	36091	160513_QHF_FH_JSI10Kac_6	34.444	25.011			0.95329	0.91138	34.077	5	0	Median	1.0734	0.91138	NaN	1	0	Median	0.53174	0.63936	21.484	2	0	Median	0.95329	0.96023	NaN	1	0	Median	1.2161	1.3858	NaN	1	0	Median	141900000	75300000	66602000	24887000	11008000	13879000	47846000	29955000	17891000	34063000	17720000	16343000	35105000	16616000	18488000	53332	2904	50233	322564;322565;322566;322567;322568	434439;434440	434440			1	
VAVVAGYGDVGK	1	Unmodified	1133.6081	0.60807369	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.89	6.14	4	2			1	3	3	3	2	3	7	4	4	47.989	41.157	2	4.119E-16	36543	160511_QHF_FH_JSI9i_1	163.94	141.2			0.95221	1.0282	23.531	18	6	Median	1.8482	1.4668	29.864	3	2	Plateau	0.87488	1.0541	9.7677	7	3	Median	1.0163	0.99893	42.412	4	1	Median	0.83496	0.92236	8.5692	4	0	Median	5455200000	2626800000	2828400000	989490000	374020000	615470000	1527600000	735650000	791940000	1477400000	655620000	821800000	1460700000	861500000	599170000	53333	1234	50234	322569;322570;322571;322572;322573;322574;322575;322576;322577;322578;322579;322580;322581;322582;322583;322584;322585;322586	434441;434442;434443;434444;434445;434446;434447;434448;434449;434450;434451;434452;434453;434454;434455;434456;434457;434458;434459;434460;434461;434462;434463;434464;434465;434466	434456			26	
VAVVCSSNQNR	0	Unmodified	1232.5932	0.59316868	4887	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		18.358	10.732	2	0.005925	7963	160513_QHF_FH_JSI11Kac_4	59.8	40.013			1.2033	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2033	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1823400	925150	898290	0	0	0	0	0	0	1823400	925150	898290	0	0	0	53334	4887	50235	322587	434467;434468	434468			2	
VAVVDYVEPSPQGTR	0	Unmodified	1615.8206	0.82058566	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	53.528	52.864	2;3	0.00015923	47861	160511_QHF_FH_JSI11i_1	116.24	104.03			0.90011	0.89891	15.489	8	2	Median	1.2333	1.0047	20.365	2	0	Median	0.7715	0.89891	0.9863	2	1	Median	1.1431	1.1222	19.069	2	1	Median	0.80004	0.85434	3.8144	2	0	Median	574350000	282610000	291740000	138680000	62989000	75695000	140840000	75976000	64866000	146200000	65832000	80369000	148630000	77813000	70814000	53335	4879	50236	322588;322589;322590;322591;322592;322593;322594;322595	434469;434470;434471;434472;434473;434474;434475;434476	434469			7	
VAVVGNVDAGK	1	Unmodified	1027.5662	0.56620887	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4	5.2	3					1				1	1		2	30.945	28.271	2	0.00022799	24476	160511_QHF_FH_JSI9i_1	93.111	74.38			0.94022	1.0288	23.861	4	0	Median	1.5434	1.2587	NaN	1	0	Median	0.89683	1.0537	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79264	0.84541	24.38	2	0	Median	264400000	132760000	131640000	81300000	35667000	45633000	96664000	52710000	43954000	0	0	0	86435000	44386000	42049000	53336	103	50237	322596;322597;322598;322599	434477;434478;434479;434480;434481	434479			5	
VAVVLIQK	1	Unmodified	868.57459	0.57458871	3256	Q7Z392	TRAPPC11	Trafficking protein particle complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.639							2	4	1	1	3	2	1	58.088	47.654	2	0.0074615	26124	160513_QHF_FH_JSI11Kac_5	73.039	31.537			1.0053	1.0161	11.452	7	0	Median	1.3431	1.1384	NaN	1	0	Median	0.85059	1.0006	17.992	3	0	Median	1.0166	1.0077	1.1742	2	0	Median	0.91891	1.0175	NaN	1	0	Median	69907000	34843000	35065000	8287600	3620700	4667000	33078000	18387000	14691000	23375000	9808200	13567000	5166000	3026500	2139500	53337	3256	50238	322600;322601;322602;322603;322604;322605;322606	434482;434483;434484;434485	434484			4	
VAVVLMDTQGAFDSQSTVK	1	Unmodified	1994.9983	0.99829203	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	6									1	3	1	1	75.579	75.096	2;3	1.7454E-16	68060	160511_QHF_FH_JSI10i_1	123.64	109.98			1.0077	1.0084	16.872	4	0	Median	1.4851	1.1817	NaN	1	0	Median	0.68707	0.80398	NaN	1	0	Median	1.1367	1.0826	NaN	1	0	Median	0.89333	0.93926	NaN	1	0	Median	146910000	77007000	69903000	25480000	11538000	13942000	51952000	29500000	22453000	39514000	19797000	19717000	29964000	16173000	13792000	53338	3036	50239	322607;322608;322609;322610;322611;322612	434486;434487;434488;434489	434488			2	
VAVVNPQPQQWSK	1	Unmodified	1479.7834	0.78341229	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	47.639	46.65	2	0.0024732	40840	160511_QHF_FH_JSI9i_2	58.223	37.446			1.0878	0.92779	31.403	3	3	Median	1.0878	0.92779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72049	0.67732	NaN	1	1	Median	1.1155	1.2693	NaN	1	1	Median	37073000	21990000	15082000	10588000	4939500	5649000	0	0	0	16599000	13082000	3517000	9885100	3968800	5916300	53339	3200	50240	322613;322614;322615;322616	434490;434491;434492;434493	434492			4	
VAVVNQIAR	0	Unmodified	968.57671	0.57671398	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	32.31	31.393	2	0.013861	27229	160511_QHF_FH_JSI9i_2	46.016	1.6209			0.88095	0.91912	8.9346	3	0	Plateau	0.90178	0.78553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88095	0.92082	NaN	1	0	Median	0.72462	0.79237	NaN	1	0	Median	196890000	104280000	92614000	57907000	28314000	29593000	0	0	0	78049000	44827000	33223000	60937000	31139000	29798000	53340	2162	50241	322617;322618;322619	434494;434495;434496	434495			3	
VAVYVPGSK	1	Unmodified	918.51747	0.51746776	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.21	4	2	1				2			2	2	3	2	39.632	36.711	2	0.0030629	32997	160511_QHF_FH_JSI11i_1	61.962	39.831			1.0142	1.0143	24.197	9	0	Median	1.3561	1.1312	47.372	2	0	Median	0.71812	0.84067	2.5636	2	0	Median	1.0347	1.0081	2.7048	3	0	Plateau	1.134	1.2345	27.773	2	0	Median	783920000	382250000	401670000	103640000	40532000	63104000	157510000	87690000	69823000	285720000	127020000	158700000	237050000	127010000	110040000	53341	4535	50242	322620;322621;322622;322623;322624;322625;322626;322627;322628	434497;434498;434499;434500;434501;434502;434503;434504;434505;434506;434507;434508	434498			12	
VAWHIDPFGHSR	0	Unmodified	1420.7	0.70001701	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			4							1		1	2	55.989	55.484	4	0.039881	47184	160511_QHF_FH_JSI12i_3	15.387	8.9494			1.2639	1.3273	35.093	4	2	Median	0.93346	0.78757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8439	1.7632	NaN	1	0	Median	1.2639	1.3273	17.469	2	1	Median	60212000	24225000	35987000	11978000	6602900	5374800	0	0	0	10675000	3888700	6786100	37559000	13734000	23826000	53342	163	50243	322629;322630;322631;322632	434509;434510;434511	434510			3	
VAWLFLFSK	1	Unmodified	1109.6274	0.62735256	4488	Q9BW60	ELOVL1	Elongation of very long chain fatty acids protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.006	86.614	2	0.00027171	48647	160513_QHF_FH_JSI11Kac_6	101.43	79.194			0.97776	0.98352	15.582	4	0	Median	1.0633	0.89172	NaN	1	0	Median	0.89911	1.0848	NaN	1	0	Median	1.2428	1.1716	NaN	1	0	Median	0.77709	0.84471	NaN	1	0	Median	743830000	397500000	346330000	180610000	105920000	74696000	286350000	163720000	122640000	216220000	89336000	126880000	60649000	38530000	22119000	53343	4488	50244	322633;322634;322635;322636	434512;434513;434514;434515;434516;434517;434518;434519	434513			8	
VAWVSHDSTVCLADADK	1	Unmodified	1872.8676	0.8676122	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	52.716	52.598	3	9.7081E-05	45084	160511_QHF_FH_JSI12i_3	89.261	73.123			1.1353	1.0863	47.494	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81734	0.77641	NaN	1	0	Median	1.577	1.5198	NaN	1	0	Median	81718000	37993000	43726000	0	0	0	0	0	0	37064000	17517000	19547000	44654000	20476000	24179000	53344	255	50245	322637;322638	434520	434520			0	
VAWVSHDSTVCLADADKK	2	Unmodified	2000.9626	0.96257522	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	46.203	45.961	3	1.1634E-05	39356	160511_QHF_FH_JSI12i_3	82.877	72.016			0.69028	0.6995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69028	0.6995	NaN	1	1	Median	34606000	12976000	21630000	0	0	0	0	0	0	0	0	0	34606000	12976000	21630000	53345	255	50246	322639;322640	434521;434522	434522			2	
VAYEGSDSEK	1	Unmodified	1083.472	0.47203371	2097	P78549	NTHL1	Endonuclease III-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		9.9995	9.8181	2	0.0022957	7377	160511_QHF_FH_JSI9i_1	64.04	51.003			1.0152	1.0543	0.84212	2	2	Median	NaN	NaN	NaN	0	0	Median	0.90271	1.0481	NaN	1	1	Median	1.1416	1.0606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	138620000	66490000	72126000	0	0	0	70528000	35828000	34700000	68088000	30662000	37426000	0	0	0	53346	2097	50247	322641;322642;322643	434523;434524;434525	434525			3	
VAYGIDSLFSFYHNKPK	2	Unmodified	1985.0047	0.0046980325	4809	Q9H9F9	ACTR5	Actin-related protein 5	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	83.167	82.249	4	3.9962E-06	70769	160511_QHF_FH_JSI12i_3	95.428	88.655			1.0048	1.1293	9.9288	3	0	Median	1.4921	1.2366	NaN	1	0	Median	0.95932	1.1293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0048	1.0141	NaN	1	0	Median	116170000	59013000	57157000	19630000	7375300	12255000	16791000	11187000	5603300	0	0	0	79749000	40450000	39299000	53347	4809	50248	322644;322645;322646	434526;434527	434527			2	
VAYIPDEMAAQQNPLQQPR	0	Unmodified	2168.0684	0.068437276	132	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	70.634	70.093	2;3	1.4569E-18	62319	160511_QHF_FH_JSI9i_1	160.81	156.14			1.1085	1.1206	14.004	8	1	Median	1.4139	1.1638	7.5332	2	0	Median	0.88276	1.0291	18.412	2	0	Median	1.1822	1.1386	4.0243	2	0	Median	0.91958	0.9674	22.563	2	1	Median	965040000	464800000	500240000	209150000	85702000	123450000	206120000	110080000	96038000	313830000	145950000	167880000	235940000	123060000	112880000	53348	132	50249	322647;322648;322649;322650;322651;322652;322653;322654;322655	434528;434529;434530;434531;434532;434533;434534;434535;434536;434537;434538;434539	434538			12	
VAYPQADSNLR	0	Unmodified	1232.6149	0.61494998	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.33	6.13	2						1			1	2			34.134	30.326	2	0.0040396	26772	160511_QHF_FH_JSI9i_1	76.465	64.975			1.3074	1.359	12.038	3	3	Median	1.4474	1.2075	NaN	1	1	Median	1.2307	1.4449	8.6656	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	287710000	131180000	156530000	144180000	61140000	83044000	143530000	70045000	73482000	0	0	0	0	0	0	53349	3765	50250	322656;322657;322658	434540;434541;434542	434542			3	
VAYQREPQILK	1	Unmodified	1343.7561	0.75613491	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			33.724	32.309	3	0.040534	27012	160511_QHF_FH_JSI10i_3	22.232	7.5451			0.93577	0.89316	23.61	2	0	Median	0.95031	0.75583	NaN	1	0	Median	0.92146	1.0554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96975000	50263000	46712000	50118000	21786000	28332000	46856000	28476000	18380000	0	0	0	0	0	0	53350	4749	50251	322659;322660	434543;434544;434545	434543			3	
VAYTEADYYHTELWMEQALR	0	Unmodified	2488.1369	0.13691077	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		92.787	92.427	3	2.2707E-06	81255	160511_QHF_FH_JSI11i_2	83.776	79.123			1.2501	1.2343	8.1706	3	0	Median	1.4006	1.2343	NaN	1	0	Median	0.8887	1.0806	NaN	1	0	Median	1.2501	1.2539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	155790000	79682000	76105000	33076000	16023000	17053000	36377000	19446000	16932000	86334000	44213000	42120000	0	0	0	53351	1035	50252	322661;322662;322663	434546;434547;434548;434549;434550	434547			5	
VAYTTVLQEWLR	0	Unmodified	1477.7929	0.79291434	3010	Q63ZY3	KANK2	KN motif and ankyrin repeat domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	100.93	100.94	2	0.00022223	87554	160511_QHF_FH_JSI12i_3	94.616	69.399			1.2118	1.141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2118	1.141	NaN	1	1	Median	31433000	13715000	17718000	0	0	0	0	0	0	0	0	0	31433000	13715000	17718000	53352	3010	50253	322664	434551	434551			1	
VAYVQLAHGQTFTFPDLFPEK	1	Unmodified	2407.2212	0.22123275	2737	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.29			5						3	2	1	4	1	97.022	93.551	3	1.6733E-23	87587	160511_QHF_FH_JSI12i_3	174	161.7			1.14	1.0728	56.482	8	6	Median	2.7467	2.2515	109.24	2	1	Median	0.91797	1.1052	NaN	1	0	Median	1.2225	1.1753	34.4	4	4	Median	1.0031	1.0415	NaN	1	1	Median	1460200000	643900000	816260000	161590000	38599000	122990000	78602000	42377000	36226000	703210000	335090000	368120000	516760000	227840000	288920000	53353	2737	50254	322665;322666;322667;322668;322669;322670;322671;322672	434552;434553;434554;434555;434556;434557;434558;434559;434560	434560			9	
VAYVSFGPHAGK	1	Unmodified	1231.635	0.63495714	1720	P50914	RPL14	60S ribosomal protein L14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.4	1	8	11					4	8	8	8	7	9	41.124	36.934	2;3	7.7475E-23	30564	160511_QHF_FH_JSI10i_3	176.38	156.05			0.94238	0.99523	26.236	31	2	Median	1.3399	1.1168	5.0785	7	0	Median	0.84564	1.0098	9.9173	8	0	Median	0.97216	0.92416	10.731	7	0	Median	0.87814	0.9218	45.211	9	2	Median	46373000000	21905000000	24468000000	6644300000	2638300000	4006100000	9619500000	4473400000	5146200000	10197000000	4667700000	5529400000	19912000000	10126000000	9786400000	53354	1720	50255	322673;322674;322675;322676;322677;322678;322679;322680;322681;322682;322683;322684;322685;322686;322687;322688;322689;322690;322691;322692;322693;322694;322695;322696;322697;322698;322699;322700;322701;322702;322703;322704	434561;434562;434563;434564;434565;434566;434567;434568;434569;434570;434571;434572;434573;434574;434575;434576;434577;434578;434579;434580;434581;434582;434583;434584;434585;434586;434587;434588;434589;434590;434591;434592;434593;434594;434595;434596;434597;434598;434599;434600;434601;434602;434603;434604;434605;434606;434607;434608;434609;434610;434611;434612;434613;434614;434615;434616;434617;434618;434619;434620;434621;434622;434623;434624;434625;434626;434627;434628;434629;434630;434631;434632;434633;434634;434635;434636;434637;434638;434639;434640;434641;434642;434643;434644;434645;434646;434647;434648;434649;434650;434651;434652;434653;434654;434655;434656;434657;434658;434659	434583			99	
VCADLIR	0	Unmodified	845.44292	0.44292261	1918	P60866	RPS20	40S ribosomal protein S20	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	31.456	30.14	2	0.013926	25464	160511_QHF_FH_JSI12i_2	67.035	38.928			1.7904	2.0063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7904	2.0063	NaN	1	0	Median	441680000	191780000	249900000	0	0	0	0	0	0	0	0	0	441680000	191780000	249900000	53355	1918	50256	322705	434660;434661	434660			2	
VCAHITNIPFSITK	1	Unmodified	1599.8443	0.84429799	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	66.927	66.215	2;3	2.1672E-07	58819	160511_QHF_FH_JSI11i_3	94.297	81.72			1.1827	1.1696	25.486	5	1	Median	1.1827	0.94442	NaN	1	0	Median	1.0337	1.1696	NaN	1	0	Median	1.0676	1.0101	NaN	1	0	Median	1.5161	1.574	16.476	2	1	Median	557690000	258060000	299630000	48774000	22808000	25966000	100960000	57008000	43953000	190590000	87158000	103430000	217370000	91084000	126290000	53356	4996	50257	322706;322707;322708;322709;322710;322711	434662;434663;434664;434665;434666;434667;434668;434669;434670;434671;434672;434673	434664			12	
VCALLSCTSHK	1	Unmodified	1274.6111	0.61112693	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								1	4	2	24.444	24.253	2;3	3.2487E-05	19981	160511_QHF_FH_JSI12i_3	94.363	88.52			2.328	2.2649	78.712	7	6	Median	NaN	NaN	NaN	0	0	Median	0.74747	0.88864	NaN	1	0	Median	1.4128	1.3352	79.145	4	4	Median	3.3039	3.4159	9.6502	2	2	Median	1473900000	484860000	989000000	0	0	0	77738000	50813000	26925000	779570000	297770000	481800000	616560000	136280000	480270000	53357	1067	50258	322712;322713;322714;322715;322716;322717;322718	434674;434675;434676;434677;434678;434679;434680	434680			6	
VCALLSCTSHKDYPFHEEF	1	Acetyl (K)	2381.0457	0.045652924	1067	P15121	AKR1B1	Aldose reductase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		79.653	70.339	3	0.0019082	38552	160513_QHF_FH_JSI11Kac_6	69.935	61.226			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15514000	15514000	0	0	0	0	0	0	0	15514000	15514000	0	0	0	0	53358	1067	50259	322719	434681	434681	902		1	
VCANHVITK	1	Unmodified	1040.5437	0.54369929	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	11.384	11.429	2	0.0039802	8659	160511_QHF_FH_JSI12i_3	57.96	27.242			1.0251	1.0594	27.18	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94063	0.87412	NaN	1	0	Median	1.1171	1.2838	NaN	1	0	Median	125520000	55413000	70111000	0	0	0	0	0	0	53601000	26460000	27141000	71923000	28953000	42970000	53359	1685	50260	322720;322721	434682;434683;434684;434685	434685			4	
VCANHWITTTMNLK	1	Unmodified	1687.8174	0.81743131	1685;31;191	P49792;A6NKT7;Q7Z3J3;O14715;Q99666	RANBP2;RGPD3;RGPD4;RGPD8;RGPD5	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6	no	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			61.957	60.439	3	0.019408	49587	160511_QHF_FH_JSI9i_3	33.842	22.571			1.0623	1.2395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0623	1.2395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76256000	43140000	33117000	0	0	0	76256000	43140000	33117000	0	0	0	0	0	0	53360	1685;31;191	50261	322722;322723	434686;434687	434687			2	
VCDIAAELAR	0	Unmodified	1116.5597	0.55974328	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			14.525	13.896	3	0.013073	11512	160511_QHF_FH_JSI10i_2	28.956	12.578			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53361	127	50262	322724	434688	434688			1	
VCENIPIVLCGNK	1	Unmodified	1514.7585	0.75851945	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	4.47	8	8	1				3			4	6	5	5	65.517	63.312	2;3	8.3821E-07	57503	160511_QHF_FH_JSI11i_1	129.85	116.5			0.97446	1.0591	22.421	20	4	Median	1.0316	0.84156	14.394	4	0	Median	0.8933	1.066	15.407	6	2	Median	0.96083	0.92331	22.321	5	2	Median	1.2591	1.3439	29.89	5	0	Median	2793100000	1417400000	1375700000	410270000	219970000	190300000	665530000	376730000	288790000	894540000	437290000	457250000	822790000	383390000	439400000	53362	2021	50263	322725;322726;322727;322728;322729;322730;322731;322732;322733;322734;322735;322736;322737;322738;322739;322740;322741;322742;322743;322744	434689;434690;434691;434692;434693;434694;434695;434696;434697;434698;434699;434700;434701;434702;434703;434704;434705;434706;434707;434708;434709	434691			21	
VCFGMLPK	1	Unmodified	950.47178	0.4717799	5593	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			58.379	56.843	2	0.030812	47517	160511_QHF_FH_JSI10i_3	41.502	22.771			1.3287	1.5093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3287	1.5093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13555000	6096100	7458900	0	0	0	13555000	6096100	7458900	0	0	0	0	0	0	53363	5593	50264	322745	434710	434710			1	
VCIESEHSMDTLLATLK	1	Unmodified	1945.9489	0.94889899	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		3										1	2	84.634	83.728	2;3	5.1675E-05	72373	160511_QHF_FH_JSI12i_2	49.141	39.083			0.72115	0.76006	53.844	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69772	0.68656	NaN	1	0	Median	1.2479	1.3621	51.665	2	1	Median	118360000	76370000	41991000	0	0	0	0	0	0	65234000	41940000	23294000	53127000	34429000	18697000	53364	112	50265	322746;322747;322748	434711;434712	434711			2	
VCIESEHSMDTLLATLKK	2	Unmodified	2074.0439	0.04386201	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	77.394	77.261	4	9.088E-05	67127	160511_QHF_FH_JSI12i_3	60.528	46.274			1.0129	0.99607	70.613	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63767	0.60456	NaN	1	0	Median	1.609	1.6411	NaN	1	0	Median	74966000	36239000	38726000	0	0	0	0	0	0	24157000	14450000	9707400	50808000	21789000	29019000	53365	112	50266	322749;322750	434713;434714;434715	434715			3	
VCISILHAPGDDPMGYESSAER	0	Unmodified	2403.0835	0.083494993	1914	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.631	72.336	3	7.9634E-06	62792	160511_QHF_FH_JSI12i_3	73.809	65.208			1.1225	1.1347	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1225	1.1347	NaN	1	1	Median	57012000	28079000	28934000	0	0	0	0	0	0	0	0	0	57012000	28079000	28934000	53366	1914	50267	322751	434716	434716			1	
VCIVGSGNWGSAVAK	1	Unmodified	1503.7504	0.7503976	3513	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	60.049	59.452	2	9.9988E-05	51133	160511_QHF_FH_JSI12i_3	104.82	56.03			0.99578	0.922	25.94	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79046	0.922	NaN	1	1	Median	0.8138	0.73141	NaN	1	0	Median	1.2185	1.2276	NaN	1	0	Median	99199000	52331000	46868000	0	0	0	10056000	6287100	3768800	34147000	16940000	17208000	54996000	29104000	25892000	53367	3513	50268	322752;322753;322754;322755	434717;434718;434719;434720;434721;434722;434723;434724	434722			8	
VCLDIIYK	1	Unmodified	1022.5471	0.54705333	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	65.231	64.33	2	0.06065	57025	160511_QHF_FH_JSI10i_2	34.931	24.944			0.88154	0.90406	24.865	4	0	Median	1.0455	0.90017	NaN	1	0	Median	0.73931	0.90796	NaN	1	0	Median	0.74331	0.73982	NaN	1	0	Median	1.2552	1.3394	NaN	1	0	Median	104850000	53140000	51714000	11051000	5536500	5514700	22581000	14810000	7771100	30402000	15894000	14507000	40821000	16900000	23921000	53368	2094	50269	322756;322757;322758;322759	434725	434725			1	
VCLEITEDGGDSIEVPGAR	0	Unmodified	2015.947	0.94698474	1464	P36952	SERPINB5	Serpin B5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	75.337	74.782	2	0.00053266	68092	160511_QHF_FH_JSI12i_1	70.622	55.42			1.5251	1.5016	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5251	1.5016	NaN	1	1	Median	11063000	3513400	7549800	0	0	0	0	0	0	0	0	0	11063000	3513400	7549800	53369	1464	50270	322760	434726	434726			1	
VCLLGCGISTGYGAAVNTAK	1	Unmodified	2010.9867	0.98668148	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	72.538	72.391	2;3	9.5975E-14	62735	160511_QHF_FH_JSI12i_3	136.99	123.27			1.5937	1.6847	16.763	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3464	1.2874	NaN	1	0	Median	1.6262	1.7177	2.7445	2	1	Median	138550000	69848000	68703000	0	0	0	0	0	0	61756000	37609000	24147000	76794000	32238000	44556000	53370	1006	50271	322761;322762;322763;322764;322765	434727;434728;434729;434730	434728			3	
VCMDFNIIRK	1	Unmodified	1294.6526	0.65259781	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		61.274	60.059	3	2.7755E-05	50404	160511_QHF_FH_JSI10i_3	98.044	86.831			1.1036	1.0552	22.198	5	4	Median	1.2383	0.98486	22.996	2	2	Median	0.84528	0.97405	37.37	2	2	Median	1.1106	1.0552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	353930000	172130000	181810000	103350000	45502000	57845000	142910000	78022000	64885000	107680000	48603000	59076000	0	0	0	53371	1520	50272	322766;322767;322768;322769;322770	434731;434732;434733;434734;434735;434736	434734			6	
VCMDLNDTFPEYK	1	Unmodified	1630.7007	0.7007298	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	71.103	70.708	2	0.00013948	64048	160511_QHF_FH_JSI10i_1	84.687	75.254			1.041	1.2491	37.859	3	1	Median	NaN	NaN	NaN	0	0	Median	1.041	1.2491	NaN	1	0	Median	0.88818	0.86189	NaN	1	1	Median	1.7965	1.8377	NaN	1	0	Median	222450000	102110000	120340000	0	0	0	78429000	36816000	41612000	75473000	41914000	33559000	68546000	23382000	45165000	53372	5536	50273	322771;322772;322773	434737;434738	434738			2	
VCMVYDLYK	1	Unmodified	1189.5512	0.55115243	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									2	2	1	61.417	60.715	2	0.00050337	52773	160511_QHF_FH_JSI11i_2	79.474	65.317			0.87168	0.8724	30.233	5	1	Median	NaN	NaN	NaN	0	0	Median	0.80453	0.94957	23.531	2	0	Median	0.86712	0.85969	2.077	2	1	Median	1.469	1.6667	NaN	1	0	Median	242380000	123610000	118770000	0	0	0	80107000	40726000	39381000	115490000	56892000	58600000	46784000	25992000	20792000	53373	1381	50274	322774;322775;322776;322777;322778	434739;434740;434741;434742;434743;434744;434745	434744			7	
VCMYFTYK	1	Unmodified	1110.4878	0.48782389	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.53		2	1					1	4	1	4	2	1	61.278	54.968	2	0.0022198	29685	160513_QHF_FH_JSI11Kac_6	91.9	74.052			1.1654	1.2013	20.219	8	2	Median	1.2934	1.0828	NaN	1	0	Median	1.0559	1.2555	23.55	4	1	Median	1.0673	1.0359	21.721	2	1	Median	1.2116	1.2768	NaN	1	0	Median	1229100000	613730000	615350000	131670000	64309000	67361000	491780000	284530000	207250000	419110000	185150000	233970000	186520000	79746000	106770000	53374	2658	50275	322779;322780;322781;322782;322783;322784;322785;322786	434746;434747;434748;434749;434750;434751;434752;434753;434754;434755;434756;434757;434758	434747			13	
VCMYFTYK	1	Oxidation (M)	1126.4827	0.48273852	2658	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	yes	yes	0	0	1	0	By matching	By matching	By MS/MS	By MS/MS	15.4	0.685							1	3	5	2	2	2	3	49.184	39.367	2	0.017379	20533	160513_QHF_FH_JSI12Kac_6	55.531	34.976			1.1992	1.2566	22.293	9	0	Median	1.574	1.3364	8.7025	2	0	Median	0.93743	1.1223	11.585	2	0	Median	0.97049	0.94386	11.606	2	0	Median	1.2485	1.3514	19.786	3	0	Median	120320000	54764000	65551000	19904000	7572700	12331000	23794000	9741700	14053000	29567000	16536000	13031000	47050000	20914000	26135000	53375	2658	50275	322787;322788;322789;322790;322791;322792;322793;322794;322795	434759;434760;434761	434761		2085	3	
VCNDEQLLLELQQIK	1	Unmodified	1841.9557	0.95569893	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	91.792	91.365	3	0.033092	83179	160511_QHF_FH_JSI12i_1	42.242	36.348			1.6851	1.6587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6851	1.6587	NaN	1	0	Median	11740000	5841900	5898200	0	0	0	0	0	0	0	0	0	11740000	5841900	5898200	53376	3290	50276	322796	434762	434762			0	
VCNFLASQVPFPSR	0	Unmodified	1620.8082	0.80824683	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.768	3	5	8							3	5	4	4	78.166	77.472	2;3	3.8996E-30	67368	160511_QHF_FH_JSI12i_3	193.23	182.92			1.045	1.179	25.785	16	3	Median	1.3764	1.6708	21.795	3	1	Plateau	1.0196	1.2429	18	5	1	Median	0.91172	0.8644	10.309	4	0	Median	1.169	1.223	17.583	4	1	Median	1569300000	769190000	800120000	115960000	44871000	71089000	418530000	215150000	203380000	607680000	333220000	274460000	427140000	175950000	251190000	53377	4304	50277	322797;322798;322799;322800;322801;322802;322803;322804;322805;322806;322807;322808;322809;322810;322811;322812	434763;434764;434765;434766;434767;434768;434769;434770;434771;434772;434773;434774;434775;434776;434777;434778;434779;434780;434781;434782;434783;434784;434785;434786	434786			23	
VCNNPGLYSNPDLSAAASLALGK	1	Unmodified	2331.1529	0.15289519	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.33	0.471	2	1										1	2	90.923	90.363	3	1.0858E-09	82443	160511_QHF_FH_JSI11i_1	94.463	90.195			1.1904	1.1434	18.536	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0352	0.97447	NaN	1	0	Median	1.0726	1.142	22.792	2	1	Median	92957000	48787000	44170000	0	0	0	0	0	0	24834000	15754000	9080100	68123000	33033000	35090000	53378	2605	50278	322813;322814;322815	434787;434788;434789;434790	434787			4	
VCNPIITK	1	Unmodified	943.51609	0.51608756	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	4	3	1	31.98	29.545	2	0.0076682	24840	160511_QHF_FH_JSI11i_2	58.815	39.179			0.93552	0.92988	25.174	11	3	Median	1.0971	0.92988	12.956	3	1	Median	0.80003	0.98222	25.455	4	2	Median	0.72785	0.70882	23.666	3	0	Median	1.2114	1.3356	NaN	1	0	Median	4107500000	2122500000	1985000000	527250000	215280000	311970000	1551800000	848580000	703190000	1437300000	762310000	674990000	591210000	296320000	294890000	53379	985	50279	322816;322817;322818;322819;322820;322821;322822;322823;322824;322825;322826	434791;434792;434793;434794;434795;434796;434797;434798;434799;434800;434801;434802;434803	434802			13	
VCNYGLTFTQK	1	Unmodified	1329.6387	0.63872189	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.64	2	3					1			1	1	3	1	51.671	49.197	2	7.8191E-05	44491	160511_QHF_FH_JSI11i_1	90.827	78.591			1.0339	1.0315	28.734	6	0	Median	1.5153	1.2807	NaN	1	0	Median	0.75867	0.88722	NaN	1	0	Median	0.9012	0.90763	28.817	3	0	Median	1.2897	1.4392	NaN	1	0	Median	612290000	335790000	276510000	53994000	22722000	31272000	92045000	55888000	36157000	320660000	177580000	143080000	145600000	79594000	66002000	53380	5499	50280	322827;322828;322829;322830;322831;322832	434804;434805;434806;434807;434808;434809;434810	434804			7	
VCPICQVPIR	0	Unmodified	1240.642	0.64203313	5212	Q9P2E3	ZNFX1	NFX1-type zinc finger-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.84	10.15	3	0.061205	7730	160511_QHF_FH_JSI12i_2	9.6873	3.6541			0.69471	0.76548	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69471	0.76548	NaN	1	0	Median	58737000	25966000	32772000	0	0	0	0	0	0	0	0	0	58737000	25966000	32772000	53381	5212	50281	322833	434811	434811			1	
VCQGIGMVNR	0	Unmodified	1132.5481	0.54813274	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	27.338	26.436	2	0.00035741	22043	160511_QHF_FH_JSI11i_2	77.058	68.285			1.246	1.1509	30.231	4	0	Median	1.3035	1.1174	NaN	1	0	Median	0.92359	1.1351	NaN	1	0	Median	1.1911	1.167	NaN	1	0	Median	1.9463	2.0839	NaN	1	0	Median	149530000	66476000	83052000	20320000	7643900	12676000	34451000	18277000	16174000	49823000	24867000	24955000	44935000	15688000	29247000	53382	5581	50282	322834;322835;322836;322837	434812;434813;434814;434815	434813			4	
VCSTLLGLEEHLNALDR	0	Unmodified	1938.9833	0.98331066	2817	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	84.977	84.529	3	7.4202E-05	75404	160511_QHF_FH_JSI11i_3	68.187	57.702			1.1119	1.11	21.898	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0688	1.0325	5.2706	2	0	Median	1.3147	1.3696	24.744	2	1	Median	177610000	86694000	90917000	0	0	0	0	0	0	88929000	47847000	41082000	88682000	38847000	49835000	53383	2817	50283	322838;322839;322840;322841;322842	434816;434817;434818;434819;434820;434821	434817			6	
VCSTNDLK	1	Unmodified	935.43823	0.43823117	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	5.66	2					1						2	1	11.817	9.1965	2	0.0036871	7921	160511_QHF_FH_JSI11i_1	77.674	35.21			1.3619	1.3401	47.049	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0787	1.0503	34.464	2	1	Median	2.0081	2.1089	NaN	1	1	Median	557630000	210080000	347550000	0	0	0	0	0	0	240190000	115310000	124870000	317440000	94766000	222680000	53384	939	50284	322843;322844;322845	434822;434823;434824	434822			3	
VCTLAIIDPGDSDIIR	0	Unmodified	1756.9029	0.90293508	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.35	3.23	9	5	2					1		3	6	5	3	86.636	85.444	2;3	1.6601E-21	78656	160511_QHF_FH_JSI12i_1	202.44	179.07			0.93838	1.079	17.105	15	2	Median	1.3111	1.089	1.6472	3	0	Plateau	0.90508	1.0666	9.6765	4	1	Median	0.88978	0.86497	15.372	5	1	Median	1.2338	1.3143	2.6458	3	0	Plateau	2222700000	1130700000	1092000000	208440000	90777000	117660000	676550000	356870000	319680000	781150000	424100000	357050000	556590000	258960000	297630000	53385	2033	50285	322846;322847;322848;322849;322850;322851;322852;322853;322854;322855;322856;322857;322858;322859;322860;322861;322862	434825;434826;434827;434828;434829;434830;434831;434832;434833;434834;434835;434836;434837;434838;434839;434840;434841;434842;434843;434844;434845;434846;434847;434848;434849;434850;434851;434852;434853;434854;434855;434856	434835			32	
VCVSLLGTWIGK	1	Unmodified	1331.7271	0.72714296	4582	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.128	93.106	2	5.5042E-05	80733	160511_QHF_FH_JSI12i_3	98.048	86.884			1.0693	1.114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0693	1.114	NaN	1	0	Median	37671000	18895000	18776000	0	0	0	0	0	0	0	0	0	37671000	18895000	18776000	53386	4582	50286	322863	434857;434858	434858			2	
VCYYYDGDIGNYYYGQGHPMK	1	Unmodified	2562.062	0.062031269	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2		1	2	3	68.258	63.939	3	8.4314E-07	55422	160511_QHF_FH_JSI12i_2	75.548	72.899			0.36979	0.42355	117.57	5	5	Median	NaN	NaN	NaN	0	0	Median	0.12294	0.14758	NaN	1	1	Median	0.76361	0.76514	167.11	2	2	Median	0.65852	0.73793	78.515	2	2	Median	362210000	281280000	80931000	0	0	0	118390000	102760000	15629000	165750000	128540000	37209000	78068000	49975000	28093000	53387	3882	50287	322864;322865;322866;322867;322868;322869	434859;434860;434861;434862;434863;434864	434860			6	
VCYYYDGDVGNYYYGQGHPMK	1	Unmodified	2548.0464	0.046381205	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.183	59.309	3	2.1671E-07	32590	160513_QHF_FH_JSI10Kac_6	84.94	82.099			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53388	2438	50288	322870	434865	434865			1	
VDAALHTMLLK	1	Unmodified	1210.6744	0.67437911	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.965	53.588	3	0.011329	45931	160511_QHF_FH_JSI12i_2	38.478	2.2259			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53389	3001	50289	322871	434866	434866			1	
VDAAPGIPPAVESIQDSPLPK	1	Unmodified	2100.1103	0.11028532	2713	Q15814	TBCC	Tubulin-specific chaperone C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	83.779	83.314	3	4.4588E-06	73936	160511_QHF_FH_JSI9i_1	68.49	54.449			0.98612	0.93617	9.981	4	0	Median	0.97582	0.83225	NaN	1	0	Median	0.77618	0.90896	NaN	1	0	Median	1.0047	0.96419	NaN	1	0	Median	0.99652	1.0551	NaN	1	0	Median	124730000	70770000	53955000	28482000	14381000	14100000	42062000	25529000	16533000	32199000	17428000	14771000	21982000	13432000	8550400	53390	2713	50290	322872;322873;322874;322875	434867;434868;434869;434870;434871	434871			4	
VDAIGLELVDGK	1	Unmodified	1227.6711	0.67106787	1257	P25391	LAMA1	Laminin subunit alpha-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	73.664	73.099	2	0.0095776	66609	160511_QHF_FH_JSI12i_1	47.334	32.82			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53391	1257	50291	322876	434872	434872			1	
VDALLSAQPK	1	Unmodified	1040.5866	0.58660996	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	39.637	37.358	2	0.00017227	33309	160511_QHF_FH_JSI10i_1	82.749	59.321			1.0417	1.0951	9.3934	5	0	Median	1.3517	1.0951	NaN	1	0	Median	0.75551	0.90683	NaN	1	0	Median	1.0842	1.033	NaN	1	0	Median	1.0414	1.132	2.5265	2	0	Median	1042800000	536390000	506450000	174760000	86358000	88404000	292890000	149410000	143480000	313910000	172880000	141030000	261280000	127750000	133540000	53392	5135	50292	322877;322878;322879;322880;322881	434873;434874;434875;434876;434877;434878;434879;434880;434881	434877			9	
VDALNDEINFLR	0	Unmodified	1417.7201	0.72014333	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	3	3	2	79.863	79.218	2	3.5203E-23	70593	160511_QHF_FH_JSI9i_1	215.06	161.3		+	0.96622	1.0055	13.173	10	0	Median	1.1479	0.94793	0.13789	2	0	Median	0.82279	0.98113	23.234	3	0	Median	1.0542	1.0474	9.4352	3	0	Plateau	0.96622	1.0508	2.7629	2	0	Median	3004500000	1529000000	1475500000	493850000	238290000	255560000	910490000	502540000	407950000	811630000	395600000	416030000	788520000	392590000	395930000	53393	53;71	50293	322882;322883;322884;322885;322886;322887;322888;322889;322890;322891;322892	434882;434883;434884;434885;434886;434887;434888;434889;434890;434891;434892;434893;434894;434895;434896;434897;434898;434899	434894			18	
VDALRVEDMMK	1	Unmodified	1305.6421	0.64209271	2677	Q15477	SKIV2L	Helicase SKI2W	yes	yes	0	0	0	1	By matching	By matching	By MS/MS		2	0		3								1	1	1		57.246	56.441	3	0.023287	48900	160511_QHF_FH_JSI11i_2	27.681	19.271			0.93385	1.2878	25.255	3	0	Plateau	0.93385	0.78585	NaN	1	0	Median	0.76329	0.92607	NaN	1	0	Median	1.243	1.2902	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	185760000	87709000	98055000	40512000	15334000	25178000	53771000	29843000	23928000	91481000	42531000	48950000	0	0	0	53394	2677	50294	322893;322894;322895	434900	434900			1	
VDAPGLALLALHWHWVLK	1	Unmodified	2038.1516	0.15163704	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	95.981	86.696	4	1.9986E-10	49185	160513_QHF_FH_JSI11Kac_6	115.5	98.423			0.99699	0.83661	18.621	3	0	Plateau	0.8572	0.73411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0398	0.95342	NaN	1	0	Median	0.63434	0.6649	NaN	1	0	Median	161240000	72158000	89083000	55407000	23606000	31801000	0	0	0	57464000	26155000	31308000	48370000	22396000	25974000	53395	4997	50295	322896;322897;322898	434901;434902	434901			1	
VDAQFGGIDQR	0	Unmodified	1204.5836	0.58364985	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	6.29	5						3			2	2	2	2	41.979	37.216	2	3.2737E-07	34122	160511_QHF_FH_JSI12i_1	119.53	108.04			1.2762	1.046	40.471	7	1	Median	1.2762	1.046	NaN	1	1	Median	1.1184	1.3198	51.058	2	0	Median	1.5458	1.5058	59.906	2	0	Median	1.2689	1.3598	52.318	2	0	Median	1941500000	1022000000	919410000	376340000	177460000	198870000	475090000	255240000	219850000	674090000	346820000	327270000	415930000	242520000	173420000	53396	1823	50296	322899;322900;322901;322902;322903;322904;322905;322906	434903;434904;434905;434906;434907;434908;434909;434910	434905			8	
VDAQFGGIDQRK	1	Unmodified	1332.6786	0.67861287	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	2.67	0.471		1	2										3	30.166	29.692	2;3	0.00047596	24871	160511_QHF_FH_JSI12i_3	50.467	43.097			1.0141	1.1477	7.4175	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0141	1.1477	7.4175	3	1	Plateau	230180000	120520000	109660000	0	0	0	0	0	0	0	0	0	230180000	120520000	109660000	53397	1823	50297	322907;322908;322909	434911;434912;434913	434911			3	
VDATADYICK	1	Unmodified	1154.5278	0.52777445	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	34.538	33.849	2	0.00018731	29819	160511_QHF_FH_JSI9i_1	82.287	55.594			0.50171	0.41514	31.482	3	1	Median	0.50171	0.41514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.38473	0.37398	NaN	1	0	Median	0.64458	0.67462	NaN	1	1	Median	471040000	279330000	191710000	85211000	51495000	33717000	0	0	0	144990000	92962000	52030000	240840000	134880000	105960000	53398	1798	50298	322910;322911;322912;322913;322914;322915	434914;434915;434916;434917;434918;434919;434920;434921;434922;434923	434923			10	
VDATAETDLAK	1	Unmodified	1132.5612	0.56118307	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.24	4		2		3	1				2	4	2	2	32.857	28.566	2	2.8258E-09	25455	160511_QHF_FH_JSI10i_1	127.76	107.98			0.99595	0.96833	15.314	9	2	Median	1.3703	1.1369	3.4031	2	2	Median	0.77906	0.90406	7.9381	3	0	Median	1.114	1.0706	14.205	2	0	Median	0.93157	0.97563	25.56	2	0	Median	3615600000	1862500000	1753100000	817670000	388340000	429340000	1094200000	599790000	494360000	868410000	454270000	414130000	835360000	420100000	415260000	53399	1034	50299	322916;322917;322918;322919;322920;322921;322922;322923;322924;322925	434924;434925;434926;434927;434928;434929;434930;434931;434932;434933;434934;434935	434929			12	
VDATEESDLAQQYGVR	0	Unmodified	1779.8275	0.82752153	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.08	9	2	1			4				2	9	2	3	56.737	53.685	2;3	2.5237E-116	48679	160511_QHF_FH_JSI11i_1	320.75	302.01			0.99428	1.0037	29.56	15	2	Median	1.2656	1.0599	0.24488	2	0	Median	0.6753	0.79472	36.507	8	2	Median	1.0942	1.0706	9.1197	2	0	Median	0.99428	1.0552	22.946	3	0	Median	18192000000	8603500000	9588200000	5021900000	2090800000	2931100000	5894700000	3240400000	2654300000	3423500000	1613600000	1809900000	3851700000	1658700000	2193000000	53400	867	50300	322926;322927;322928;322929;322930;322931;322932;322933;322934;322935;322936;322937;322938;322939;322940;322941	434936;434937;434938;434939;434940;434941;434942;434943;434944;434945;434946;434947;434948;434949;434950;434951;434952;434953;434954;434955;434956;434957;434958	434937			22	
VDATEESDLAQQYGVRGYPTIK	1	Unmodified	2439.1918	0.19178311	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	2	2									2	1	1	66.457	65.871	3	1.3036E-05	60023	160511_QHF_FH_JSI12i_1	69.922	55.462			0.50338	0.509	124.2	4	4	Median	NaN	NaN	NaN	0	0	Median	0.15517	0.1815	188.29	2	2	Median	0.45254	0.46194	NaN	1	1	Median	0.55993	0.56085	NaN	1	1	Median	89279000	71790000	17489000	0	0	0	43749000	38313000	5436400	20471000	17290000	3180800	25059000	16187000	8871500	53401	867	50301	322942;322943;322944;322945	434959;434960;434961;434962;434963	434959			5	
VDAVFVGTGDLFAAMLLAWTHK	1	Unmodified	2361.2191	0.21912426	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0	By MS/MS				16	0									2	2				101.13	91.954	3	7.8727E-29	53094	160513_QHF_FH_JSI9Kac_6	151.42	138.94			1.2091	1.0487	11.42	2	1	Median	1.2091	1.0487	11.42	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114120000	55534000	58582000	114120000	55534000	58582000	0	0	0	0	0	0	0	0	0	53402	165	50302	322946;322947	434964;434965	434964			2	
VDAVHADVYR	0	Unmodified	1143.5673	0.5672715	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		5								1		2	2	24.179	23.346	2;3	0.00045909	19443	160511_QHF_FH_JSI11i_2	54.471	48.729			0.96125	1.0474	6.0071	5	0	Median	1.2216	1.0474	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0138	1.0178	9.8326	2	0	Median	0.91681	1.023	6.4768	2	0	Median	503220000	254280000	248940000	76986000	30786000	46200000	0	0	0	268120000	131570000	136550000	158110000	91922000	66186000	53403	2594	50303	322948;322949;322950;322951;322952	434966;434967;434968;434969;434970	434970			5	
VDAVHLLK	1	Unmodified	893.53345	0.53345218	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	39.129	38.363	3	0.00081299	33652	160511_QHF_FH_JSI10i_2	72.485	20.63			0.98347	0.97514	16.484	5	0	Median	1.1587	0.9819	NaN	1	0	Median	0.64224	0.77044	NaN	1	0	Median	0.89779	0.86438	17.051	2	0	Median	0.9982	1.1138	NaN	1	0	Median	579340000	295330000	284010000	91224000	37614000	53611000	118670000	65447000	53221000	248560000	133770000	114800000	120890000	58507000	62381000	53404	4996	50304	322953;322954;322955;322956;322957	434971;434972;434973;434974;434975;434976;434977;434978;434979;434980	434979			10	
VDAVHLLKDHVGR	1	Acetyl (K)	1499.8209	0.82086043	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		68.364	58.802	3	0.014718	31853	160513_QHF_FH_JSI11Kac_6	53.947	41.18			0.13813	0.13571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.13813	0.13571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20520000	18048000	2472600	0	0	0	0	0	0	20520000	18048000	2472600	0	0	0	53405	4996	50305	322958	434981	434981	3294		0	
VDAVIRK	1	Unmodified	799.49159	0.49158736	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	11.931	11.661	2	0.015035	9186	160511_QHF_FH_JSI11i_3	65.676	14.778			1.0468	1.035	12.506	4	0	Median	1.1349	0.97906	NaN	1	0	Median	0.96555	1.1675	NaN	1	0	Median	1.1526	1.0941	NaN	1	0	Median	0.85661	0.87893	NaN	1	0	Median	604460000	360470000	244000000	56036000	29382000	26655000	75471000	40878000	34593000	204500000	101150000	103350000	268450000	189050000	79401000	53406	3860	50306	322959;322960;322961;322962	434982;434983;434984	434983			3	
VDAYHLQLQNLLYEVMHLQK	1	Unmodified	2454.273	0.27295074	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	16	0									3	1		1	1	96.643	87.338	4	2.7088E-10	49684	160513_QHF_FH_JSI11Kac_6	114.37	100.78			1.0916	0.92489	19.25	3	0	Plateau	1.0916	0.92489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0031	0.96181	NaN	1	0	Median	1.2296	1.3141	NaN	1	0	Median	369700000	178340000	191370000	160690000	84270000	76417000	0	0	0	124320000	51525000	72795000	84696000	42540000	42156000	53407	2469	50307	322963;322964;322965	434985;434986	434985			2	
VDCDQHSDIAQR	0	Unmodified	1442.6208	0.62083999	4390	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	10.326	10.016	2	0.0010807	7963	160511_QHF_FH_JSI12i_1	65.5	62.245			1.4752	1.5981	14.928	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5796	1.776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3776	1.438	NaN	1	0	Median	68484000	32517000	35968000	0	0	0	30249000	13897000	16353000	0	0	0	38235000	18620000	19615000	53408	4390	50308	322966;322967	434987;434988	434987			2	
VDCTAHSDVCSAQGVR	0	Unmodified	1760.757	0.7570159	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1				1	2	2	18.604	16.464	3	0.00013382	13982	160511_QHF_FH_JSI10i_1	66.335	60.431			1.2419	1.2753	17.344	4	1	Median	NaN	NaN	NaN	0	0	Median	0.86363	1.0273	NaN	1	0	Median	1.3616	1.3398	18.106	2	1	Median	1.3227	1.3798	NaN	1	0	Median	132090000	57346000	74739000	0	0	0	44922000	23201000	21721000	41117000	17444000	23673000	46046000	16701000	29345000	53409	3603	50309	322968;322969;322970;322971;322972	434989;434990;434991;434992;434993;434994	434993			6	
VDCTANTNTCNK	1	Unmodified	1396.5711	0.57111261	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.73	4.73	4	1	3		2	1				2	2	3	4	7.9216	5.4331	2	3.3433E-78	5095	160511_QHF_FH_JSI10i_1	247.08	242.47			0.98018	0.9395	36.427	9	1	Median	0.98018	0.7976	NaN	1	0	Median	0.61105	0.70688	40.233	2	0	Median	1.0227	0.98998	16.642	3	0	Plateau	1.4776	1.5687	56.28	3	1	Plateau	2107800000	982030000	1125700000	295400000	145350000	150050000	605550000	297020000	308530000	555940000	250920000	305020000	650880000	288750000	362130000	53410	1344	50310	322973;322974;322975;322976;322977;322978;322979;322980;322981;322982;322983	434995;434996;434997;434998;434999;435000;435001;435002;435003;435004;435005;435006;435007;435008;435009	435004			15	
VDCTQHYELCSGNQVR	0	Unmodified	1964.8469	0.84689354	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.011	28.102	3	2.2839E-05	23729	160511_QHF_FH_JSI11i_2	84.874	81.154			1.0074	1.1013	31.491	4	1	Median	0.92285	0.79468	NaN	1	1	Median	0.88604	1.0929	NaN	1	0	Median	1.0996	1.1098	NaN	1	0	Median	1.4857	1.7111	NaN	1	0	Median	192080000	97376000	94707000	19882000	10788000	9093300	46802000	27258000	19543000	71081000	36574000	34507000	54319000	22755000	31563000	53411	3603	50311	322984;322985;322986;322987	435010;435011;435012;435013;435014	435013			5	
VDDDSLGEFPVTNSR	0	Unmodified	1649.7533	0.75329395	3884	Q92785	DPF2	Zinc finger protein ubi-d4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	57.059	56.459	2	2.368E-11	50135	160511_QHF_FH_JSI9i_1	102.62	88.386			0.98623	0.95283	10.368	5	3	Median	1.0968	0.93312	NaN	1	1	Median	0.79187	0.92102	11.838	2	2	Median	0.98623	0.95283	NaN	1	0	Median	1.1003	1.1244	NaN	1	0	Median	176850000	91674000	85171000	27877000	12170000	15707000	80829000	43946000	36883000	35278000	18213000	17064000	32862000	17345000	15517000	53412	3884	50312	322988;322989;322990;322991;322992;322993;322994	435015;435016;435017;435018;435019;435020;435021;435022;435023	435023			9	
VDDEPMDVDK	1	Unmodified	1161.486	0.48596922	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	1	0	3									1	1		1	26.719	26.013	2	0.053469	22958	160511_QHF_FH_JSI10i_1	47.706	40.138			1.0794	1.2805	13.355	3	0	Median	1.6094	1.3483	NaN	1	0	Median	1.0794	1.2805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97706	1.0471	NaN	1	0	Median	118540000	63023000	55514000	33049000	15117000	17932000	45391000	25898000	19493000	0	0	0	40098000	22009000	18089000	53413	2353	50313	322995;322996;322997	435024	435024			0	
VDDESMQR	0	Unmodified	978.40766	0.40765932	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.7803	8.4295	2	0.0094619	6282	160511_QHF_FH_JSI10i_1	56.014	45.141			0.91951	0.93732	8.9336	4	0	Median	1.1307	0.94047	NaN	1	0	Median	0.80154	0.93418	NaN	1	0	Median	1.0493	1.0157	NaN	1	0	Median	0.80576	0.81899	NaN	1	0	Median	798480000	433910000	364570000	163130000	80864000	82264000	240060000	143130000	96934000	210440000	104030000	106410000	184840000	105880000	78961000	53414	3101	50314	322998;322999;323000;323001	435025;435026	435026			2	
VDDFLANEAK	1	Unmodified	1120.5401	0.5400537	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	45.281	41.747	2	2.3033E-05	36886	160511_QHF_FH_JSI9i_1	98.048	82.897			1.0718	1.1655	13.919	6	2	Median	1.6219	1.3244	NaN	1	0	Median	1.0251	1.1912	NaN	1	0	Median	1.0705	1.0448	12.389	2	1	Median	0.99281	1.0515	17.95	2	1	Median	5074100000	2349400000	2724700000	847190000	262880000	584310000	1387300000	688450000	698810000	1540800000	732750000	808090000	1298800000	665340000	633490000	53415	1764	50315	323002;323003;323004;323005;323006;323007	435027;435028;435029;435030;435031;435032;435033;435034;435035;435036	435035			10	
VDDFLRR	0	Unmodified	919.48756	0.48756462	4175	Q96MU7	YTHDC1	YTH domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By matching	2.25	0.433		3	1							1	1	1	1	25.37	24.796	3	0.036811	21308	160511_QHF_FH_JSI9i_2	29.149	13.517			0.77838	0.79581	18.789	4	1	Median	1.2132	1.0519	NaN	1	1	Median	0.54002	0.67003	NaN	1	0	Median	0.81008	0.81664	NaN	1	0	Median	0.74793	0.77551	NaN	1	0	Median	99971000	52756000	47215000	14528000	6466000	8061600	21802000	11435000	10366000	23949000	11354000	12595000	39692000	23500000	16192000	53416	4175	50316	323008;323009;323010;323011	435037;435038	435037			2	
VDDHLMGKQHMGYAK	2	Acetyl (K)	1770.8182	0.81815959	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		44.79	35.15	4	0.00035783	19199	160513_QHF_FH_JSI11Kac_6	66.285	54.811			0.25469	0.25264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25469	0.25264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7908600	6408400	1500200	0	0	0	0	0	0	7908600	6408400	1500200	0	0	0	53417	660	50317	323012	435039	435039	329		1	
VDDIHAICSLLK	1	Unmodified	1382.7228	0.72278587	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	72.958	72.008	3	0.014941	62999	160511_QHF_FH_JSI11i_2	40.725	35.63			2.3192	2.3433	5.0235	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3018	2.2615	NaN	1	1	Median	2.3368	2.428	NaN	1	1	Median	18295000	5856400	12439000	0	0	0	0	0	0	11782000	3408900	8372700	6513300	2447500	4065800	53418	4634	50318	323013;323014	435040;435041	435041			2	
VDDLLIIEEK	1	Unmodified	1185.6493	0.6492698	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.26	4					2	2			1	3	1	3	73.477	67.874	2	4.2896E-05	62375	160511_QHF_FH_JSI12i_1	94.309	79.158			1.0571	1.1373	36.157	7	2	Median	NaN	NaN	NaN	0	0	Median	1.3634	1.6096	42.709	3	1	Median	0.82055	0.78619	NaN	1	0	Median	0.82814	0.86651	34.138	3	1	Plateau	430520000	234980000	195540000	0	0	0	150150000	81056000	69094000	150270000	85182000	65086000	130110000	68746000	61359000	53419	2517	50319	323015;323016;323017;323018;323019;323020;323021;323022	435042;435043;435044;435045;435046;435047;435048;435049;435050;435051;435052	435044			11	
VDDNEETIK	1	Unmodified	1061.4877	0.48768378	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	13.052	12.78	2	0.019471	10337	160511_QHF_FH_JSI11i_1	50.607	32.698			0.92571	0.92126	12.757	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86444	0.84179	NaN	1	1	Median	0.99131	1.0082	NaN	1	1	Median	208700000	122150000	86552000	0	0	0	0	0	0	126020000	73679000	52339000	82680000	48467000	34213000	53420	776	50320	323023;323024	435053;435054	435053			2	
VDDNEETIKK	2	Unmodified	1189.5826	0.5826468	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	6									1	1	2	2	10.378	10.037	2;3	1.355E-05	7701	160511_QHF_FH_JSI9i_1	79.659	58.287			0.99352	0.97308	18.447	6	0	Median	0.95283	0.79084	NaN	1	0	Median	1.1032	1.2783	NaN	1	0	Median	1.1241	1.102	12.262	2	0	Median	0.86979	0.90749	4.536	2	0	Median	1229000000	585400000	643550000	201870000	99114000	102760000	101120000	52338000	48786000	501170000	218800000	282360000	424790000	215150000	209640000	53421	776	50321	323025;323026;323027;323028;323029;323030	435055;435056;435057;435058	435058			4	
VDDQIAIVFK	1	Unmodified	1146.6285	0.62847478	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	68.56	67.956	2	0.0019609	61920	160511_QHF_FH_JSI12i_1	66.504	41.367			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53422	2645	50322	323031	435059	435059			1	
VDDSSEDKTEFTVK	2	Unmodified	1598.7312	0.73116153	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	28.353	27.854	2;3	3.0585E-05	24591	160511_QHF_FH_JSI10i_1	99.566	74.773			1.1537	1.0564	29.623	8	2	Median	1.0965	0.88172	NaN	1	0	Median	0.63343	0.77204	7.3004	2	0	Median	1.2504	1.1964	2.7028	2	0	Median	1.2139	1.2994	32.424	3	2	Median	1277300000	658210000	619130000	177370000	77950000	99417000	349030000	195680000	153360000	344960000	194980000	149970000	405980000	189600000	216390000	53423	1664	50323	323032;323033;323034;323035;323036;323037;323038;323039;323040	435060;435061;435062;435063;435064;435065;435066;435067;435068;435069;435070;435071;435072;435073	435067			14	
VDDSSGSIGR	0	Unmodified	991.45705	0.45705235	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	10.359	9.9761	2	0.0061103	7873	160511_QHF_FH_JSI12i_1	54.982	8.5559			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53424	1519	50324	323041	435074	435074			1	
VDDSSGSIGRR	0	Unmodified	1147.5582	0.55816338	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.89	6.37		4	1					4		3	3	2	1	8.9869	4.5399	2;3	6.2519E-05	5762	160511_QHF_FH_JSI10i_2	93.598	73.811			1.0065	1.088	13.264	9	0	Median	1.4223	1.198	6.3739	3	0	Plateau	0.88578	1.0535	16.254	3	0	Median	0.94008	0.97058	5.251	2	0	Median	0.97218	1.088	NaN	1	0	Median	566490000	244940000	321550000	342940000	132210000	210730000	172830000	90151000	82679000	46435000	20326000	26109000	4284300	2255600	2028600	53425	1519	50325	323042;323043;323044;323045;323046;323047;323048;323049;323050	435075;435076;435077;435078;435079;435080;435081;435082;435083;435084	435084			10	
VDDYSQEWAAQTEK	1	Unmodified	1668.7267	0.72674485	708	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	44.345	43.82	2	1.2311E-10	38964	160511_QHF_FH_JSI9i_1	114.72	99.091			0.87446	0.9399	25.882	4	3	Median	NaN	NaN	NaN	0	0	Median	1.0056	1.1376	NaN	1	0	Median	0.74758	0.72659	NaN	1	1	Median	0.95637	0.96742	31.083	2	2	Median	85294000	50980000	34314000	0	0	0	32103000	20006000	12097000	17435000	11776000	5658500	35757000	19198000	16558000	53426	708	50326	323051;323052;323053;323054;323055	435085;435086;435087;435088;435089	435089			5	
VDEAIALFQK	1	Unmodified	1132.6128	0.61282471	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	64.538	63.786	2	1.0786E-05	58264	160511_QHF_FH_JSI12i_1	120.15	106.89			1.1085	1.1213	74.091	7	5	Median	0.80581	0.6805	105.51	2	2	Median	1.6527	1.9699	NaN	1	1	Median	1.3462	1.3253	23.64	2	1	Median	0.55591	0.59544	84.732	2	1	Median	1041200000	530590000	510580000	247690000	142260000	105430000	183150000	83518000	99628000	225140000	104650000	120500000	385180000	200160000	185030000	53427	1283	50327	323056;323057;323058;323059;323060;323061;323062	435090;435091;435092;435093;435094;435095;435096	435092			7	
VDEAVAVLQAHHAK	1	Unmodified	1486.7892	0.78922595	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.85		10	3						4	2	5	6	4	33.092	30.152	2;3;4	3.6887E-07	25712	160511_QHF_FH_JSI12i_2	108.59	77.069			0.95301	1.0223	43.036	14	7	Median	0.95658	0.82311	22.588	2	0	Median	1.0111	1.2134	45.385	4	3	Median	1.3085	1.2575	59.923	5	4	Median	0.86808	0.9577	11.725	3	0	Median	1516900000	698880000	818070000	132940000	68891000	64048000	623390000	247490000	375910000	477350000	244240000	233110000	283260000	138260000	145000000	53428	2385	50328	323063;323064;323065;323066;323067;323068;323069;323070;323071;323072;323073;323074;323075;323076;323077;323078;323079	435097;435098;435099;435100;435101;435102;435103;435104;435105;435106;435107;435108;435109;435110;435111;435112	435100			15	
VDEAVAVLQAHQAK	1	Unmodified	1477.7889	0.7888916	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	6.43	3	8	4				4	8	2	7	8	6	8	43.985	38.793	2;3	2.0805E-21	33026	160511_QHF_FH_JSI11i_2	175.15	157.34			0.93841	0.97445	24.748	28	7	Median	1.02	0.87379	16.532	7	2	Median	0.94863	1.1349	36.449	8	3	Median	0.97907	0.96561	9.3439	6	0	Median	0.77156	0.84804	20.931	7	2	Median	6754700000	3202800000	3551900000	1088400000	501610000	586790000	1724900000	804540000	920400000	2539300000	1197600000	1341700000	1402100000	699080000	702980000	53429	1009;4688	50329	323080;323081;323082;323083;323084;323085;323086;323087;323088;323089;323090;323091;323092;323093;323094;323095;323096;323097;323098;323099;323100;323101;323102;323103;323104;323105;323106;323107;323108	435113;435114;435115;435116;435117;435118;435119;435120;435121;435122;435123;435124;435125;435126;435127;435128;435129;435130;435131;435132;435133;435134;435135;435136;435137;435138;435139;435140;435141;435142;435143;435144;435145;435146;435147;435148;435149;435150;435151;435152;435153;435154;435155;435156;435157;435158;435159;435160;435161	435140			48	
VDEDEEALK	1	Unmodified	1046.4768	0.47678474	4534	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	18.96	18.383	2	0.0012901	15689	160511_QHF_FH_JSI11i_1	78.149	66.927			1.2967	1.2281	11.303	3	1	Median	1.2967	1.0651	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2809	1.2281	NaN	1	1	Median	1.2975	1.3315	NaN	1	0	Median	315280000	153950000	161330000	108630000	48775000	59859000	0	0	0	108460000	50011000	58454000	98181000	55166000	43014000	53430	4534	50330	323109;323110;323111	435162;435163;435164	435162			3	
VDEDSAEDTQSNDGK	1	Unmodified	1608.6387	0.6387177	4673	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	9.9475	9.567	2	1.9012E-41	7407	160511_QHF_FH_JSI12i_1	211.26	201.58			1.5943	1.56	41.545	4	1	Median	1.4388	1.194	NaN	1	0	Median	2.6913	3.1137	NaN	1	1	Median	1.7666	1.694	NaN	1	0	Median	1.356	1.4367	NaN	1	0	Median	192650000	71675000	120970000	56913000	27983000	28930000	38772000	4355000	34417000	51749000	18134000	33615000	45214000	21202000	24012000	53431	4673	50331	323112;323113;323114;323115;323116	435165;435166;435167;435168;435169;435170;435171	435167			7	
VDEEPTTLPSGEAK	1	Unmodified	1471.7042	0.70421849	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		32.165	31.878	2	0.0033178	28373	160511_QHF_FH_JSI10i_1	64.878	50.72			1.1348	1.1919	89.01	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9552	2.2366	NaN	1	1	Median	0.65867	0.63519	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43327000	24228000	19100000	0	0	0	13934000	4786800	9147100	29393000	19441000	9952500	0	0	0	53432	3011	50332	323117;323118	435172;435173	435173			2	
VDEEQMK	1	Unmodified	877.38513	0.38513296	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.75	5.07	1				1	2					1	3		11.528	5.9971	2	0.028362	5077	160513_QHF_FH_JSI11Kac_3	62.717	32.91			0.95039	1.0175	46.085	4	1	Median	NaN	NaN	NaN	0	0	Median	0.81712	0.95349	NaN	1	0	Median	0.5534	0.53471	56.431	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1105100000	678490000	426600000	0	0	0	5846700	3010800	2835900	1099200000	675480000	423770000	0	0	0	53433	1024	50333	323119;323120;323121;323122	435174;435175	435175			2	
VDEEQMK	1	Oxidation (M)	893.38005	0.38004758	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	0			By MS/MS		13	0						1						1		5.0905	-2.2303	2	0.033288	1642	160513_QHF_FH_JSI11Kac_3	56.011	38.025			0.87919	0.85892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87919	0.85892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11446000	6106600	5339000	0	0	0	0	0	0	11446000	6106600	5339000	0	0	0	53434	1024	50333	323123	435176	435176			1	
VDEEQMKYK	2	Acetyl (K)	1210.554	0.5539892	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		34.796	26.037	2	0.025645	15342	160513_QHF_FH_JSI11Kac_3	49.418	44.511			0.74741	0.80857	102.01	2	0	Median	NaN	NaN	NaN	0	0	Median	1.408	1.6633	NaN	1	0	Median	0.39676	0.39307	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38100000	24462000	13638000	0	0	0	10170000	4164800	6004900	27930000	20297000	7633000	0	0	0	53435	1024	50334	323124;323125	435177	435177	847		1	
VDEETQEVLENLK	1	Unmodified	1544.757	0.75698235	4374	Q9BRK5	SDF4	45 kDa calcium-binding protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			62.344	61.963	2	8.4901E-06	55932	160511_QHF_FH_JSI10i_1	131.17	106.79			0.57198	0.6745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57198	0.6745	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	143090000	89101000	53989000	0	0	0	143090000	89101000	53989000	0	0	0	0	0	0	53436	4374	50335	323126	435178	435178			1	
VDEFPLCGHMVSDEYEQLSSEALEAAR	0	Unmodified	3081.3696	0.36956584	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	1	2	100.79	100.71	3	1.4075E-113	86491	160511_QHF_FH_JSI12i_2	261.58	255.55			1.3142	1.2842	21.724	5	0	Median	1.3142	1.0952	NaN	1	0	Median	1.0586	1.2842	NaN	1	0	Median	1.0834	1.1024	NaN	1	0	Median	1.595	1.6873	4.5224	2	0	Median	1102100000	511540000	590510000	63195000	24597000	38598000	246950000	127330000	119620000	457450000	234450000	223000000	334460000	125160000	209300000	53437	1292	50336	323127;323128;323129;323130;323131;323132	435179;435180;435181;435182;435183	435179			5	
VDEFVTHNLSFDEINK	1	Unmodified	1905.9109	0.91085723	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.555	2	9	2							4	4	3	2	68.857	68.009	2;3	8.9898E-52	60303	160511_QHF_FH_JSI10i_2	231.06	208.83			1.0243	1.0557	13.452	11	3	Median	1.0692	0.8999	2.7962	2	0	Median	0.86615	1.0276	19.273	4	2	Median	1.1164	1.1002	4.9765	3	1	Median	0.97918	1.074	8.9009	2	0	Median	2853700000	1404300000	1449400000	453570000	205200000	248370000	940970000	488430000	452540000	898410000	446990000	451420000	560790000	263700000	297080000	53438	1006	50337	323133;323134;323135;323136;323137;323138;323139;323140;323141;323142;323143;323144;323145	435184;435185;435186;435187;435188;435189;435190;435191;435192;435193;435194;435195;435196;435197;435198;435199;435200;435201;435202;435203;435204	435204			21	
VDEFVTHNLSFDEINKAFELMHSGK	2	Acetyl (K)	2948.4015	0.40145831	1006	P11766	ADH5	Alcohol dehydrogenase class-3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.818	83.446	4	0.012666	46986	160513_QHF_FH_JSI11Kac_6	47.38	39.758			0.27264	0.26843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27264	0.26843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38789000	35128000	3661000	0	0	0	0	0	0	38789000	35128000	3661000	0	0	0	53439	1006	50338	323146	435205	435205	803		1	
VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK	1	Unmodified	2845.3842	0.38422834	5166	Q9NZT2	OGFR	Opioid growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	56.86	56.168	3	1.6589E-49	50855	160511_QHF_FH_JSI11i_1	168.17	162.29			1.02	0.9532	15.083	7	6	Median	1.0559	0.85058	16.108	2	2	Median	1.02	1.2085	NaN	1	0	Median	0.99092	0.9341	13.096	2	2	Median	0.95744	0.99183	8.6464	2	2	Median	480030000	235810000	244230000	120800000	61164000	59633000	94949000	52976000	41973000	131920000	59936000	71986000	132370000	61731000	70636000	53440	5166	50339	323147;323148;323149;323150;323151;323152;323153	435206;435207;435208;435209;435210;435211;435212;435213;435214;435215;435216;435217	435207			12	
VDEGVDEFFTK	1	Unmodified	1284.5874	0.58739782	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				63.891	62.841	2	0.015032	55846	160511_QHF_FH_JSI9i_1	51.531	26.405			2.294	1.9041	NaN	1	1	Median	2.294	1.9041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115000000	36672000	78323000	115000000	36672000	78323000	0	0	0	0	0	0	0	0	0	53441	3003	50340	323154	435218	435218			1	
VDELSLYSVPEGQSK	1	Unmodified	1649.8148	0.81483158	4451	Q9BUR5	APOO	Apolipoprotein O	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.63	9					2				2	3	3	3	62.718	60.995	2;3	5.4395E-16	53965	160511_QHF_FH_JSI9i_1	168.98	154.3			0.99702	1.0011	11.394	8	1	Median	1.2154	0.99647	1.1914	2	0	Median	0.84122	0.98048	3.1322	2	0	Median	0.96695	0.95	NaN	1	0	Median	0.95435	0.99974	15.702	3	1	Plateau	784750000	374990000	409760000	212820000	90704000	122110000	202380000	104740000	97643000	174220000	82539000	91684000	195330000	97008000	98319000	53442	4451	50341	323155;323156;323157;323158;323159;323160;323161;323162;323163;323164;323165	435219;435220;435221;435222;435223;435224;435225;435226;435227;435228;435229;435230;435231;435232;435233	435230			15	
VDENFDCVEADDVEGK	1	Unmodified	1839.7469	0.74688795	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.205	49.791	2	3.9589E-17	45060	160511_QHF_FH_JSI11i_1	126.95	115.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53443	220	50342	323166	435234	435234			1	
VDESGPPAPSK	1	Unmodified	1082.5244	0.52440364	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		14.031	13.846	2	0.0094029	11324	160511_QHF_FH_JSI11i_1	58.37	33.551			0.54098	0.56586	6.6151	2	1	Median	NaN	NaN	NaN	0	0	Median	0.47347	0.54	NaN	1	0	Median	0.61813	0.59295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66560000	39326000	27235000	0	0	0	35218000	23366000	11852000	31342000	15960000	15383000	0	0	0	53444	2789	50343	323167;323168	435235;435236	435235			2	
VDESGPPAPSKPR	1	Unmodified	1335.6783	0.67827852	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	14.997	14.419	3	0.0044226	11698	160511_QHF_FH_JSI11i_3	54.09	40.126			0.94914	0.9781	50.079	4	1	Median	1.2168	1.0557	NaN	1	0	Median	0.74033	0.9062	NaN	1	0	Median	0.47097	0.4387	NaN	1	1	Median	1.2996	1.4272	NaN	1	0	Median	163520000	84840000	78679000	42596000	20652000	21943000	31869000	17848000	14021000	67324000	37933000	29391000	21730000	8406200	13323000	53445	2789	50344	323169;323170;323171;323172	435237;435238;435239	435237			3	
VDESGPPAPSKPR	1	Acetyl (K)	1377.6888	0.6888432	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.7	0.471					2	4					2	1	3	36.564	27.885	2;3	6.0738E-08	13376	160513_QHF_FH_JSI12Kac_2	113.47	93.143			1.1269	1.2285	36.645	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1369	1.3526	48.812	2	0	Median	1.0427	1.0307	NaN	1	0	Median	1.1568	1.2563	39.392	3	0	Median	79393000	37321000	42072000	0	0	0	30178000	14620000	15558000	14720000	6877700	7842200	34495000	15824000	18671000	53446	2789	50344	323173;323174;323175;323176;323177;323178	435240;435241;435242;435243;435244;435245;435246	435246	2688		7	
VDESHKTIK	2	Acetyl (K)	1097.5717	0.57168818	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		18.139	10.517	3	0.0078317	7910	160513_QHF_FH_JSI11Kac_4	57.174	43.481			0.073512	0.072094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073512	0.072094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14277000	14062000	215190	0	0	0	0	0	0	14277000	14062000	215190	0	0	0	53447	3328	50345	323179	435247	435247	2837		1	
VDEVGGEALGR	0	Unmodified	1100.5462	0.54620171	72	CON__Q3SX09;CON__P02070			yes	no	0	0	0	0	By matching	By MS/MS	By matching	By matching	3.4	4.8	4					1				1	2	1	1	29.112	26.907	2	0.0048775	23888	160511_QHF_FH_JSI10i_1	54.066	38.685		+	1.127	1.1835	19.292	5	0	Median	1.2174	0.9936	NaN	1	0	Median	0.96309	1.1307	6.4602	2	0	Median	1.6689	1.6516	NaN	1	0	Median	1.127	1.2005	NaN	1	0	Median	1601100000	639590000	961510000	381140000	144590000	236550000	529000000	250520000	278470000	436450000	139460000	297000000	254520000	105030000	149490000	53448	72	50346	323180;323181;323182;323183;323184	435248;435249;435250	435249			3	
VDEVPDGAVKPPTNK	2	Unmodified	1564.8097	0.80968662	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.905	32.307	2;3	0.00025361	29102	160511_QHF_FH_JSI12i_1	69.594	62.555			1.0744	1.0725	16.689	5	1	Median	1.0744	0.89431	NaN	1	0	Median	0.81516	0.95121	NaN	1	0	Median	1.425	1.3818	NaN	1	0	Median	1.0506	1.0774	0.65113	2	1	Median	1012700000	493030000	519680000	213390000	104480000	108910000	246640000	131830000	114810000	287790000	121440000	166360000	264890000	135290000	129600000	53449	532	50347	323185;323186;323187;323188;323189	435251;435252;435253;435254;435255;435256;435257;435258;435259;435260;435261;435262;435263	435256			13	
VDEVSTEPIPESWR	0	Unmodified	1642.7839	0.7838658	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.461	60.81	2	2.3737E-08	55330	160511_QHF_FH_JSI12i_1	101.35	85.096			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53450	228	50348	323190	435264	435264			1	
VDFDIFHPSLQQK	1	Unmodified	1572.7936	0.79364262	2809	Q330K2	NDUFAF6	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	77.156	77.023	3	0.0029748	66910	160511_QHF_FH_JSI12i_3	45.79	39.758			0.93258	0.9297	27.29	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82638	0.76654	NaN	1	0	Median	1.0524	1.1276	NaN	1	0	Median	34829000	16594000	18235000	0	0	0	0	0	0	15630000	8895900	6734200	19199000	7698300	11500000	53451	2809	50349	323191;323192	435265	435265			1	
VDFEQLTENLGQLER	0	Unmodified	1789.8846	0.88464248	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		98.373	98.238	2	0.00067	87063	160511_QHF_FH_JSI10i_2	87.001	72.843			0.68341	0.84006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68341	0.84006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9188200	6482400	2705800	0	0	0	9188200	6482400	2705800	0	0	0	0	0	0	53452	5696	50350	323193;323194;323195	435266;435267;435268	435268			3	
VDFNVPMK	1	Unmodified	948.47389	0.47388839	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.73	5	4	4				2	3		3	4	5	6	57.578	53.58	2;3	0.00032001	48662	160511_QHF_FH_JSI11i_1	112.17	82.598			0.98305	1.0115	10.138	16	1	Median	1.1065	1.0329	15.585	3	0	Plateau	0.81495	0.96687	5.912	4	0	Median	1.0884	1.0697	8.746	4	0	Median	0.96828	1.0138	11.22	5	1	Median	34642000000	16207000000	18435000000	7808700000	3004400000	4804300000	8944000000	4609900000	4334200000	10739000000	5087700000	5651300000	7150600000	3505100000	3645500000	53453	775;866	50351	323196;323197;323198;323199;323200;323201;323202;323203;323204;323205;323206;323207;323208;323209;323210;323211;323212;323213	435269;435270;435271;435272;435273;435274;435275;435276;435277;435278;435279;435280;435281;435282;435283;435284;435285;435286;435287;435288;435289;435290;435291;435292;435293;435294;435295;435296;435297;435298;435299;435300;435301;435302	435271			34	
VDFNVPMK	1	Oxidation (M)	964.4688	0.46880301	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.54	4						4	2		1	3	2	4	47.44	40.906	2	0.0048378	37508	160511_QHF_FH_JSI11i_1	74.255	58.623			1.0349	1.0443	10.157	10	1	Median	1.2853	1.0467	NaN	1	0	Median	0.80398	0.95585	14	3	0	Plateau	1.0924	1.0532	3.3571	2	0	Median	0.98336	1.0553	13.053	4	1	Median	1829300000	990350000	838960000	281700000	129690000	152010000	455990000	265410000	190580000	553480000	300490000	252990000	538140000	294760000	243390000	53454	775;866	50351	323214;323215;323216;323217;323218;323219;323220;323221;323222;323223	435303;435304;435305;435306;435307;435308;435309;435310;435311;435312	435303		289	10	
VDFPQDQLTALTGR	0	Unmodified	1559.7944	0.79437091	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								4	3	3	4	78.427	77.832	2;3	3.4469E-22	70782	160511_QHF_FH_JSI10i_1	182.08	162.32			0.96645	1.0223	29.743	14	4	Median	1.2531	1.0491	48.237	4	2	Median	0.86729	1.005	6.6071	3	0	Plateau	0.99389	0.95077	15.72	3	0	Median	0.85246	0.89328	28.619	4	2	Median	4493900000	2294100000	2199800000	983490000	435850000	547640000	1350200000	733640000	616590000	1171100000	609770000	561360000	989070000	514880000	474190000	53455	1504	50352	323224;323225;323226;323227;323228;323229;323230;323231;323232;323233;323234;323235;323236;323237	435313;435314;435315;435316;435317;435318;435319;435320;435321;435322;435323;435324;435325;435326;435327;435328;435329;435330;435331;435332;435333;435334;435335;435336;435337;435338;435339;435340;435341;435342	435328			30	
VDFPYQDK	1	Unmodified	1010.4709	0.4709115	3770	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.334	41.12	2	0.045338	36370	160511_QHF_FH_JSI9i_1	38.303	10.129			1.0477	0.84527	NaN	1	0	Median	1.0477	0.84527	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41878000	17965000	23913000	41878000	17965000	23913000	0	0	0	0	0	0	0	0	0	53456	3770	50353	323238	435343	435343			1	
VDFSITK	1	Unmodified	808.43307	0.43306943	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									2	1	1	43.443	42.847	2	0.023222	38644	160511_QHF_FH_JSI11i_1	55.676	15.573			0.87944	0.82145	19.14	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.73613	0.8747	20.258	2	0	Median	0.90479	0.89024	NaN	1	0	Median	0.63794	0.65014	NaN	1	0	Median	321430000	186600000	134830000	0	0	0	144940000	82983000	61954000	94604000	51091000	43513000	81885000	52522000	29364000	53457	2044	50354	323239;323240;323241;323242	435344;435345	435344			2	
VDFTEEEINNMK	1	Unmodified	1467.6552	0.65515981	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	57.842	57.19	2;3	6.5046E-65	50670	160511_QHF_FH_JSI9i_1	232.79	219.44			1.0709	1.0454	9.3093	8	0	Median	1.2902	1.0636	8.9796	2	0	Median	0.92603	1.0825	20.678	2	0	Median	1.0636	1.0177	0.5107	2	0	Median	1.0608	1.1065	4.7514	2	0	Median	3973600000	1906300000	2067300000	994430000	361820000	632610000	1014000000	550210000	463740000	877000000	392590000	484410000	1088200000	601710000	486490000	53458	1600	50355	323243;323244;323245;323246;323247;323248;323249;323250;323251	435346;435347;435348;435349;435350;435351;435352;435353;435354;435355;435356;435357;435358;435359;435360;435361;435362;435363	435359			18	
VDFTEEEINNMK	1	Oxidation (M)	1483.6501	0.65007443	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	43.888	43.13	2	6.1505E-05	39093	160511_QHF_FH_JSI12i_1	102.52	91.766			0.86114	0.87716	7.3971	3	0	Median	1.0564	0.87716	NaN	1	0	Median	0.65765	0.77471	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86114	0.88376	NaN	1	0	Median	278350000	144280000	134070000	56941000	30345000	26596000	93558000	51072000	42486000	0	0	0	127850000	62862000	64989000	53459	1600	50355	323252;323253;323254;323255	435364;435365;435366;435367;435368;435369;435370	435364		1280	7	
VDFVIPK	1	Unmodified	816.47454	0.47454032	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	1	2	58.092	57.267	2	0.016662	48985	160511_QHF_FH_JSI12i_2	62.717	37.719			0.9204	0.992	25.945	6	1	Median	0.92246	0.78104	50.647	2	1	Median	0.89427	1.0345	NaN	1	0	Median	1.0335	1.0199	NaN	1	0	Median	0.89089	0.94788	2.5105	2	0	Median	964200000	499700000	464500000	275540000	141870000	133670000	204510000	102490000	102010000	177760000	91094000	86662000	306390000	164240000	142150000	53460	543	50356	323256;323257;323258;323259;323260;323261	435371;435372;435373;435374;435375	435371			5	
VDGAEWGVDLPSVEAQLGSHR	0	Unmodified	2221.0764	0.076359426	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	84.773	84.601	3	8.9131E-07	73346	160511_QHF_FH_JSI12i_3	78.708	69.851			1.6162	1.6835	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6162	1.6835	NaN	1	0	Median	46823000	17925000	28897000	0	0	0	0	0	0	0	0	0	46823000	17925000	28897000	53461	2636	50357	323262	435376;435377	435377			2	
VDGAYVAVK	1	Unmodified	920.49673	0.49673232	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		27.395	26.805	2	0.0098729	23694	160511_QHF_FH_JSI11i_1	50.607	24.005			0.88982	1.0335	7.5748	3	0	Plateau	1.082	0.88849	NaN	1	0	Median	0.88982	1.0335	NaN	1	0	Median	0.9897	0.96696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	179270000	96686000	82579000	54468000	27544000	26924000	69815000	39088000	30727000	54982000	30054000	24928000	0	0	0	53462	641	50358	323263;323264;323265	435378	435378			1	
VDGEIILHLYDK	1	Unmodified	1413.7504	0.75038083	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.48	72.53	3	0.01148	62541	160511_QHF_FH_JSI12i_2	36.519	27.63			0.7537	0.77548	16.7	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87395	0.87268	NaN	1	0	Median	0.64999	0.6891	NaN	1	0	Median	45195000	28454000	16741000	0	0	0	0	0	0	28822000	18169000	10653000	16373000	10285000	6088500	53463	900	50359	323266;323267	435379;435380;435381	435379			3	
VDGMNAPK	1	Unmodified	830.39564	0.39563807	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	15.594	12.83	2	0.015799	10994	160511_QHF_FH_JSI12i_1	50.127	32.141			1.018	0.9902	12.412	6	0	Median	1.1765	0.94196	NaN	1	0	Median	0.87217	1.0113	16.383	2	0	Median	1.1314	1.0951	7.1717	2	0	Median	0.80386	0.85441	NaN	1	0	Median	3669300000	1863500000	1805800000	942300000	461250000	481050000	1052700000	576460000	476250000	1031600000	389470000	642150000	642650000	436330000	206320000	53464	1237	50360	323268;323269;323270;323271;323272;323273	435382;435383;435384;435385;435386;435387	435383			6	
VDGNDVFAVYNATK	1	Unmodified	1511.7256	0.72562264	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									2		3	1	66.163	65.536	2;3	0.00086609	59582	160511_QHF_FH_JSI12i_1	85.536	70.598			1.1203	1.1086	21.009	4	4	Median	1.0894	0.89794	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.344	1.3018	19.422	2	2	Median	1.0394	1.083	NaN	1	1	Median	377200000	188010000	189190000	89503000	38951000	50552000	0	0	0	167970000	86981000	80985000	119730000	62078000	57652000	53465	1020	50361	323274;323275;323276;323277;323278;323279	435388;435389;435390;435391;435392;435393	435391			6	
VDHFGFNTVK	1	Unmodified	1162.5771	0.57710791	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	37.46	36.801	3	2.7146E-05	31391	160511_QHF_FH_JSI11i_2	84.507	79.044			1.0073	0.97517	20.94	6	1	Median	1.154	1.0053	NaN	1	0	Median	0.77521	0.94596	NaN	1	0	Median	1.008	0.97063	13.144	2	0	Median	0.94738	1.0014	44.607	2	1	Median	648090000	305030000	343060000	56861000	27772000	29089000	125660000	62104000	63557000	245160000	116600000	128570000	220410000	98563000	121840000	53466	1548	50362	323280;323281;323282;323283;323284;323285;323286	435394;435395;435396;435397;435398;435399;435400;435401;435402;435403	435400			10	
VDHFGFNTVKTFNQR	1	Acetyl (K)	1850.9064	0.90638097	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.519	62.1	3	0.0075588	33653	160513_QHF_FH_JSI11Kac_6	49.265	31.458			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53467	1548	50363	323287	435404	435404	1566		1	
VDHLANTEINSQR	0	Acetyl (Protein N-term)	1537.7485	0.74848335	4240	Q96S99	PLEKHF1	Pleckstrin homology domain-containing family F member 1	yes	yes	0	1	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	46.143	45.383	2	3.8484E-05	41176	160511_QHF_FH_JSI12i_1	134.3	122.46			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53468	4240	50364	323288;323289;323290	435405;435406;435407	435406			3	
VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK	1	Unmodified	3314.6221	0.62210763	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.12			47						6	26	16	8	3	87.952	86.268	4;5	8.6124E-57	36806	160513_QHF_FH_JSI12Kac_6	165.37	153.16			0.9543	0.92537	21.495	53	8	Median	1.1721	0.96096	20.129	26	5	Median	0.78102	0.88786	18.12	16	1	Median	0.76626	0.72303	18.2	8	1	Median	0.94012	0.99065	6.5191	3	1	Plateau	3340300000	1671000000	1669400000	906000000	403850000	502150000	1075000000	547940000	527070000	1105600000	595240000	510330000	253770000	123950000	129820000	53469	856	50365	323291;323292;323293;323294;323295;323296;323297;323298;323299;323300;323301;323302;323303;323304;323305;323306;323307;323308;323309;323310;323311;323312;323313;323314;323315;323316;323317;323318;323319;323320;323321;323322;323323;323324;323325;323326;323327;323328;323329;323330;323331;323332;323333;323334;323335;323336;323337;323338;323339;323340;323341;323342;323343	435408;435409;435410;435411;435412;435413;435414;435415;435416;435417;435418;435419;435420;435421;435422;435423;435424;435425;435426;435427;435428;435429;435430;435431;435432;435433;435434;435435;435436;435437;435438;435439;435440;435441;435442;435443;435444;435445;435446;435447;435448;435449;435450;435451;435452;435453;435454;435455;435456;435457;435458;435459;435460;435461;435462;435463;435464;435465;435466;435467;435468;435469;435470;435471;435472;435473;435474;435475;435476;435477;435478;435479;435480;435481;435482	435477			70	
VDHVQMIVLDEADK	1	Unmodified	1610.7974	0.79740737	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.61		5						4	1	1	4	2	3	64.729	57.922	2;3	7.183E-09	50906	160511_QHF_FH_JSI10i_2	101.95	86.063			1.13	1.2735	27.268	8	0	Median	1.1581	0.96444	NaN	1	0	Median	1.0596	1.3128	40.604	3	0	Median	1.7284	1.711	NaN	1	0	Median	1.1027	1.2353	9.7119	3	0	Median	286630000	151080000	135550000	3480300	1343200	2137100	114050000	57530000	56516000	5827400	3009500	2817900	163280000	89198000	74080000	53470	1271	50366	323344;323345;323346;323347;323348;323349;323350;323351;323352;323353	435483;435484;435485;435486;435487;435488;435489;435490;435491;435492	435491			9	
VDIAEGR	0	Unmodified	758.39227	0.39226725	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	16.696	14.8	2	0.010715	12849	160511_QHF_FH_JSI12i_1	73.637	29.217			0.89899	0.89308	5.7151	5	0	Median	1.0892	0.90207	NaN	1	0	Median	0.7106	0.85791	NaN	1	0	Median	0.89044	0.8729	3.2317	2	0	Median	0.93541	0.98374	NaN	1	0	Median	2402900000	1244600000	1158300000	509170000	252520000	256650000	618550000	342930000	275620000	670390000	362230000	308160000	604840000	286920000	317920000	53471	2619	50367	323354;323355;323356;323357;323358	435493;435494;435495;435496;435497	435494			5	
VDIAEGRK	1	Unmodified	886.48723	0.48723027	2619	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.43	10.525	2	0.048369	7808	160511_QHF_FH_JSI12i_3	37.812	11.872			1.0333	1.0358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0333	1.0358	NaN	1	0	Median	78412000	39749000	38663000	0	0	0	0	0	0	0	0	0	78412000	39749000	38663000	53472	2619	50368	323359	435498	435498			1	
VDIAPHVR	0	Unmodified	905.5083	0.50830006	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	24.251	23.807	2;3	0.0010083	20011	160511_QHF_FH_JSI11i_3	69.198	44.566			1.0111	1.0118	9.0417	8	0	Median	1.3879	1.1812	NaN	1	0	Median	0.8611	1.0566	NaN	1	0	Median	1.0334	0.95745	6.3029	3	0	Median	1.0292	1.0635	6.5978	3	0	Plateau	1492000000	714610000	777350000	83288000	35568000	47720000	135250000	74763000	60485000	592220000	283650000	308570000	681210000	320630000	360580000	53473	3860	50369	323360;323361;323362;323363;323364;323365;323366;323367	435499;435500;435501;435502;435503;435504	435499			6	
VDIDAPDVDVHGPDWHLK	1	Unmodified	2026.9749	0.97485447	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		15	9							3	4	7	10	72.633	71.997	2;3;4	3.342E-16	61100	160511_QHF_FH_JSI12i_3	120.14	105.88			1.0164	1.0328	18.573	23	9	Median	1.2486	1.0715	11.653	3	1	Median	0.81852	0.9914	13.844	4	2	Median	1.0588	1.0463	24.585	7	2	Median	1.0087	1.0328	17.99	9	4	Median	2075600000	964790000	1110800000	51059000	21387000	29672000	154150000	83134000	71019000	602010000	284570000	317440000	1268400000	575700000	692650000	53474	2286	50370	323368;323369;323370;323371;323372;323373;323374;323375;323376;323377;323378;323379;323380;323381;323382;323383;323384;323385;323386;323387;323388;323389;323390;323391	435505;435506;435507;435508;435509;435510;435511;435512;435513;435514;435515;435516;435517;435518;435519;435520;435521;435522;435523;435524;435525;435526;435527;435528;435529;435530;435531;435532;435533;435534	435534			25	
VDIDAPDVSIEGPDAK	1	Unmodified	1639.7941	0.79409613	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	65.882	65.238	2;3	2.9072E-10	59337	160511_QHF_FH_JSI11i_1	168.61	148.95			0.84792	0.82936	18.967	7	3	Median	0.88281	0.72231	29.003	2	2	Median	0.60051	0.70837	NaN	1	0	Median	0.94854	0.93022	16.23	2	1	Median	0.79429	0.82554	14.992	2	0	Median	426010000	224020000	201990000	87901000	41862000	46039000	37682000	21485000	16197000	158640000	84016000	74624000	141780000	76655000	65128000	53475	2286	50371	323392;323393;323394;323395;323396;323397;323398	435535;435536;435537;435538;435539;435540;435541;435542;435543;435544	435536			10	
VDIDTPDIDIHGPEGK	1	Unmodified	1719.8315	0.83154427	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	62.823	62.334	3	4.8E-05	56511	160511_QHF_FH_JSI11i_1	77.221	72.166			1.0478	1.0478	6.0573	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83556	0.96911	NaN	1	0	Median	1.096	1.0478	NaN	1	0	Median	1.0478	1.0919	NaN	1	0	Median	482020000	226210000	255810000	0	0	0	162960000	73861000	89095000	152720000	71429000	81295000	166340000	80921000	85420000	53476	2286	50372	323399;323400;323401	435545;435546;435547	435545			3	
VDIDTPDINIEGSEGK	1	Unmodified	1700.8105	0.81047448	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.316	65.716	2	4.1027E-30	59557	160511_QHF_FH_JSI10i_1	190.85	171.09			0.89384	0.90445	2.9013	4	1	Median	1.1744	0.94044	NaN	1	1	Median	0.77929	0.90464	NaN	1	0	Median	0.90341	0.87609	NaN	1	0	Median	0.88437	0.90426	NaN	1	0	Median	280640000	144150000	136480000	40320000	13293000	27027000	98062000	53352000	44710000	76642000	43106000	33536000	65612000	34401000	31211000	53477	2286	50373	323402;323403;323404;323405	435548;435549;435550;435551;435552;435553;435554;435555	435554			8	
VDIDVPDVDVQGPDWHLK	1	Unmodified	2046.0058	0.0058202445	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	87.76	87.218	3	0.00014394	75677	160511_QHF_FH_JSI12i_3	74.793	60.332			1.5411	1.648	39.964	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5411	1.648	39.964	2	2	Median	80563000	32806000	47756000	0	0	0	0	0	0	0	0	0	80563000	32806000	47756000	53478	2286	50374	323406;323407;323408	435556;435557;435558	435558			3	
VDIDVPDVNIEGPDAK	1	Unmodified	1694.8363	0.8362953	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.7	6		1							2	1	3	1	77.074	76.627	2;3	4.4625E-10	69611	160511_QHF_FH_JSI10i_1	165.7	0			0.86752	0.84109	7.5838	5	2	Median	0.89766	0.73253	NaN	1	1	Median	0.6873	0.80085	NaN	1	0	Median	0.86859	0.85003	1.4952	2	1	Median	0.86752	0.89147	NaN	1	0	Median	842760000	449650000	393110000	102440000	51519000	50917000	242960000	146460000	96498000	308580000	154830000	153750000	188790000	96849000	91945000	53479	2286	50375	323409;323410;323411;323412;323413;323414;323415	435559;435560;435561;435562;435563;435564;435565;435566;435567;435568;435569;435570;435571;435572;435573	435570			15	
VDIDVPDVNIEGPEGK	1	Unmodified	1694.8363	0.8362953	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	76.993	76.503	2;3	3.5826E-07	69662	160511_QHF_FH_JSI12i_1	158.2	7.5097			1.0065	0.91263	9.1679	5	0	Median	1.1103	0.91263	NaN	1	0	Median	0.76196	0.87852	NaN	1	0	Median	1.0065	0.97346	NaN	1	0	Median	0.96374	0.9899	14.811	2	0	Median	480590000	238420000	242170000	43432000	18874000	24559000	85939000	48382000	37557000	73789000	34654000	39135000	277430000	136510000	140920000	53480	2286	50376	323416;323417;323418;323419;323420	435574;435575;435576;435577;435578;435579;435580;435581;435582	435580			9	
VDIDVPDVNLEAPEGK	1	Unmodified	1708.8519	0.85194536	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	79.378	78.802	2;3	3.8751E-17	71718	160511_QHF_FH_JSI11i_1	127.02	93.142			1.0516	1.0395	24.344	3	3	Plateau	0.83393	0.65663	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0631	1.0395	NaN	1	1	Median	0.886	0.95006	NaN	1	1	Median	169930000	74034000	95894000	25820000	11772000	14048000	0	0	0	100090000	39008000	61077000	44023000	23254000	20769000	53481	2286	50377	323421;323422;323423;323424	435583;435584;435585;435586	435584			4	
VDIDVPDVNVQGPDWHLK	1	Unmodified	2045.0218	0.02180466	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.587	85.56	3	7.5578E-05	73980	160511_QHF_FH_JSI12i_2	83.253	78.636			3.0778	3.4406	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.0778	3.4406	NaN	1	1	Median	119230000	28789000	90446000	0	0	0	0	0	0	0	0	0	119230000	28789000	90446000	53482	2286	50378	323425	435587	435587			1	
VDIEAPDVSLEGPEGK	1	Unmodified	1653.8097	0.8097462	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	68.966	68.324	2;3	8.2803E-30	61871	160511_QHF_FH_JSI10i_1	184.1	154.35			0.99779	0.96378	8.4968	6	1	Median	1.1574	0.96043	4.3318	2	0	Median	0.81789	0.94601	NaN	1	0	Median	1.01	0.98187	NaN	1	0	Median	0.87132	0.91375	17.313	2	1	Median	801150000	426180000	374970000	188960000	99748000	89209000	203610000	114740000	88870000	168720000	85340000	83378000	239870000	126360000	113510000	53483	2286	50379	323426;323427;323428;323429;323430;323431	435588;435589;435590;435591;435592;435593;435594;435595;435596;435597;435598;435599;435600	435595			13	
VDIEGPDVNIEGPEGK	1	Unmodified	1666.805	0.80499517	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	62.295	61.661	2;3	5.928E-45	54624	160511_QHF_FH_JSI9i_1	179.67	144.02			0.91745	0.9674	56.39	8	5	Median	1.1999	0.98695	49.15	2	1	Median	0.79057	0.92248	7.5506	2	2	Median	1.0528	1.0117	7.1588	2	0	Median	0.67442	0.69155	133.77	2	2	Median	1775400000	962200000	813220000	334290000	157840000	176450000	750420000	406880000	343550000	452200000	242670000	209530000	238510000	154810000	83693000	53484	2286	50380	323432;323433;323434;323435;323436;323437;323438;323439;323440;323441	435601;435602;435603;435604;435605;435606;435607;435608;435609;435610;435611	435611			11	
VDIETPNLEGTLTGPR	0	Unmodified	1710.8788	0.87882882	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	74.663	74.154	2;3	7.4521E-08	67176	160511_QHF_FH_JSI10i_1	136.93	112.08			1.3068	1.2134	10.506	6	5	Median	1.4525	1.1765	1.1048	2	1	Median	1.068	1.2479	17.42	2	2	Median	1.2584	1.2417	NaN	1	1	Median	1.357	1.4258	NaN	1	1	Median	507150000	200630000	306530000	142830000	46613000	96214000	188080000	86116000	101960000	113730000	40328000	73400000	62524000	27571000	34953000	53485	2286	50381	323442;323443;323444;323445;323446;323447	435612;435613;435614;435615;435616;435617;435618	435614			7	
VDIEVLSVLASLGASVHK	1	Unmodified	1836.0357	0.03566381	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	97.348	87.905	3	0.039124	48146	160513_QHF_FH_JSI12Kac_6	39.244	27.63			1.199	1.3018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.199	1.3018	NaN	1	0	Median	12086000	7442900	4643300	0	0	0	0	0	0	0	0	0	12086000	7442900	4643300	53486	1359	50382	323448	435619	435619			0	
VDIGDTIIYLVH	0	Unmodified	1356.7289	0.7289171	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	101.4	101.3	2	6.0617E-06	91855	160511_QHF_FH_JSI12i_1	122.19	107.32			0.95911	1.0303	7.4939	4	0	Median	1.3258	1.0801	NaN	1	0	Median	0.84334	1.002	NaN	1	0	Median	1.077	1.0595	NaN	1	0	Median	0.85417	0.91386	NaN	1	0	Median	447530000	244500000	203030000	48187000	22770000	25416000	175570000	94491000	81076000	116100000	62024000	54075000	107680000	65214000	42462000	53487	5215	50383	323449;323450;323451;323452	435620;435621;435622	435621			3	
VDIIENQVMDFR	0	Unmodified	1477.7235	0.72351415	1188	P21266	GSTM3	Glutathione S-transferase Mu 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		77.255	76.569	2	5.6013E-05	67510	160511_QHF_FH_JSI9i_2	108.7	92.065			1.1174	1.2285	40.163	4	3	Median	2.8332	2.3491	NaN	1	1	Median	1.0216	1.2541	NaN	1	0	Median	1.0607	1.0444	20.039	2	2	Median	NaN	NaN	NaN	0	0	Median	198250000	89249000	109000000	35141000	10273000	24868000	33472000	16442000	17030000	129640000	62534000	67101000	0	0	0	53488	1188	50384	323453;323454;323455;323456	435623;435624;435625;435626	435623			4	
VDIIPGFEFDR	0	Unmodified	1306.6558	0.65575216	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		90.277	89.919	2	0.0042787	79217	160511_QHF_FH_JSI9i_2	65.347	37.605			4.3722	3.8179	NaN	1	1	Median	4.3722	3.8179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13500000	3429000	10071000	13500000	3429000	10071000	0	0	0	0	0	0	0	0	0	53489	4715	50385	323457;323458	435627;435628	435627			2	
VDIKDRK	2	Acetyl (K)	914.51853	0.5185304	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	2		By MS/MS			15	0								1			1			20.351	11.143	2	0.052517	7592	160513_QHF_FH_JSI10Kac_5	61.679	10.976			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53490	2021	50386	323459	435629	435629			1	
VDILDPALLR	0	Unmodified	1123.6601	0.66010926	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	84.598	84.013	2	1.5899E-05	72575	160511_QHF_FH_JSI12i_2	99.802	90.214			0.79203	0.84986	15.345	8	0	Median	0.92559	0.77037	26.083	2	0	Median	0.74259	0.87885	8.0721	2	0	Median	0.83372	0.82212	8.0217	2	0	Median	0.74599	0.79183	25.358	2	0	Median	497790000	265510000	232290000	92014000	44258000	47756000	124190000	76412000	47776000	179660000	88286000	91373000	101930000	56549000	45383000	53491	1131	50387	323460;323461;323462;323463;323464;323465;323466;323467	435630;435631;435632;435633;435634;435635;435636;435637;435638;435639;435640;435641	435632			12	
VDILYNNIK	1	Unmodified	1090.6023	0.60226003	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	54.911	54.011	2	2.693E-05	46249	160511_QHF_FH_JSI12i_2	103.83	60.75			1.0214	1.0392	7.0608	5	0	Median	1.081	0.9213	NaN	1	0	Median	0.8435	1.0392	NaN	1	0	Median	1.0214	1.0395	NaN	1	0	Median	0.97838	1.0496	8.5158	2	0	Median	859450000	439530000	419920000	147750000	78199000	69547000	133760000	60747000	73008000	274320000	141610000	132710000	303630000	158970000	144660000	53492	5658	50388	323468;323469;323470;323471;323472	435642;435643;435644;435645;435646;435647;435648;435649	435643			8	
VDINAPDVDVHGPDWHLK	1	Unmodified	2025.9908	0.99083888	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	1	3	5	69.843	69.307	3;4	4.8545E-05	59706	160511_QHF_FH_JSI12i_3	86.727	78.367			1.1172	1.0688	5.9395	10	3	Median	1.1165	0.9441	NaN	1	0	Median	0.84738	1.0465	NaN	1	0	Median	1.135	1.117	2.2866	3	1	Median	1.0163	1.0518	4.9013	5	2	Median	1007400000	489540000	517820000	26812000	10450000	16362000	66676000	35923000	30753000	286750000	134780000	151970000	627120000	308390000	318730000	53493	2286	50389	323473;323474;323475;323476;323477;323478;323479;323480;323481;323482	435650;435651;435652;435653;435654;435655;435656;435657;435658;435659;435660;435661	435661			11	
VDINAPDVDVQGPDWHLK	1	Unmodified	2016.9905	0.99050453	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.6	3	6	1							2	2	4	2	76.377	75.893	2;3	1.134E-16	66876	160511_QHF_FH_JSI9i_2	118.23	101.24			1.0418	1.0187	12.917	8	4	Median	1.1273	0.96328	NaN	1	0	Median	0.82681	1.0002	3.9692	2	0	Median	1.0418	1.0358	6.7995	4	3	Median	1.3666	1.4048	NaN	1	1	Median	911420000	430710000	480710000	152970000	52654000	100320000	279890000	148960000	130930000	378940000	198700000	180240000	99622000	30406000	69217000	53494	2286	50390	323483;323484;323485;323486;323487;323488;323489;323490;323491;323492	435662;435663;435664;435665;435666;435667;435668;435669;435670;435671;435672;435673;435674;435675;435676;435677;435678	435671			17	
VDINAPDVDVRGPDWHLK	1	Unmodified	2045.033	0.033038048	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	70.274	69.866	3;4	4.6304E-07	60370	160511_QHF_FH_JSI12i_3	87.16	72.688			0.94098	1.0507	13.965	7	0	Median	0.88899	0.77587	NaN	1	0	Median	0.93678	1.1622	NaN	1	0	Median	1.1351	1.0873	2.7242	3	0	Median	0.92013	0.93361	2.1767	2	0	Median	565360000	307480000	257890000	19033000	9374800	9658700	28109000	18542000	9566900	178110000	84987000	93122000	340110000	194570000	145540000	53495	2286	50391	323493;323494;323495;323496;323497;323498;323499	435679;435680;435681;435682;435683;435684;435685	435684			6	
VDINAPDVEVHGPDWHLK	1	Unmodified	2040.0065	0.0064889465	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	69.682	69.162	3;4	9.4415E-09	59739	160511_QHF_FH_JSI12i_3	127.22	122.01			1.0574	1.009	11.001	8	1	Median	1.1091	0.95606	NaN	1	0	Median	1.0232	1.227	NaN	1	1	Median	1.0692	1.0257	7.6281	3	0	Plateau	1.1081	1.1222	10.524	3	0	Plateau	1562700000	766620000	796060000	58984000	27871000	31114000	26102000	14236000	11866000	493680000	247050000	246630000	983910000	477460000	506450000	53496	2286	50392	323500;323501;323502;323503;323504;323505;323506;323507	435686;435687;435688;435689;435690;435691;435692;435693;435694;435695	435694			9	
VDINAPDVEVQGK	1	Unmodified	1382.7042	0.70415892	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	51.198	50.524	2	6.3884E-16	45652	160511_QHF_FH_JSI11i_1	167.18	124.83			1.0275	1.0177	10.714	4	0	Median	1.2977	1.0645	NaN	1	0	Median	0.76329	0.89552	NaN	1	0	Median	0.98304	0.97293	NaN	1	0	Median	1.0739	1.1458	NaN	1	0	Median	1460800000	687160000	773640000	313680000	153650000	160040000	358380000	190560000	167820000	439520000	194220000	245310000	349220000	148740000	200480000	53497	2286	50393	323508;323509;323510;323511;323512	435696;435697;435698;435699;435700;435701;435702;435703	435696			8	
VDINAPDVGVQGPDWHLK	1	Unmodified	1958.985	0.98502522	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							1	2	2	3	74.677	74.031	2;3	3.7574E-09	63821	160511_QHF_FH_JSI12i_2	135.28	129.62			1.0139	0.98883	19.625	8	2	Median	1.1001	0.94801	NaN	1	0	Median	0.73659	0.88617	9.5867	2	1	Median	1.1774	1.1683	17.676	2	0	Median	1.0116	1.1121	27.267	3	1	Median	1133800000	556980000	576870000	182320000	85200000	97124000	223370000	126190000	97181000	357960000	162810000	195150000	370190000	182780000	187410000	53498	2286	50394	323513;323514;323515;323516;323517;323518;323519;323520	435704;435705;435706;435707;435708;435709;435710;435711;435712	435705			9	
VDINCEDMEDGTCK	1	Unmodified	1684.6379	0.63787154	2527	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		65.048	64.406	2	0.0017713	56928	160511_QHF_FH_JSI9i_1	60.434	51.001			0.96508	0.79669	15.802	4	0	Linear	0.94329	0.78874	4.3599	2	0	Median	0.95585	1.0774	NaN	1	0	Median	1.0135	0.97149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	199150000	107060000	92097000	127100000	62941000	64162000	35202000	26736000	8466000	36847000	17379000	19469000	0	0	0	53499	2527	50395	323521;323522;323523;323524;323525	435713;435714;435715;435716	435715			4	
VDINTEDLEDGTCR	0	Unmodified	1635.7046	0.7046292	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.942	49.265	2	8.6714E-81	44740	160511_QHF_FH_JSI12i_1	240.6	237.3			1.1017	1.0699	11.404	4	1	Median	1.2829	1.0375	NaN	1	1	Median	0.92286	1.1032	NaN	1	0	Median	0.99464	0.98069	NaN	1	0	Median	1.2204	1.2781	NaN	1	0	Median	570730000	291910000	278820000	68751000	36094000	32658000	124860000	66426000	58439000	178870000	91239000	87632000	198240000	98152000	100090000	53500	1192	50396	323526;323527;323528;323529	435717;435718;435719;435720;435721	435719			5	
VDINTPDVDVHGPDWHLK	1	Unmodified	2056.0014	0.0014035686	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							1	1		3	69.044	68.476	3;4	9.04E-05	59232	160511_QHF_FH_JSI12i_3	68.82	54.988			0.76903	0.808	58.999	4	3	Median	0.39144	0.33967	NaN	1	1	Median	1.0389	1.2639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76903	0.808	37.026	2	1	Median	433190000	296650000	136540000	41766000	22815000	18951000	36146000	18242000	17904000	0	0	0	355280000	255590000	99686000	53501	2286	50397	323530;323531;323532;323533;323534	435722;435723;435724;435725;435726	435726			5	
VDIQTEDLEDGTCK	1	Unmodified	1621.7141	0.71413125	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.879	45.385	2	1.48E-07	40841	160511_QHF_FH_JSI10i_1	180.2	160.44			1.7158	1.4287	21.023	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.2591	1.4287	NaN	1	1	Median	1.4652	1.4252	NaN	1	0	Median	2.0094	2.0538	NaN	1	0	Median	150890000	58127000	92763000	0	0	0	22344000	10924000	11420000	58889000	22767000	36122000	69657000	24436000	45221000	53502	512	50398	323535;323536;323537	435727;435728;435729;435730	435730			4	
VDIRPQLLK	1	Unmodified	1080.6655	0.66552898	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	49.857	49.007	3	0.00051643	41023	160511_QHF_FH_JSI10i_3	59.35	29.095			0.90187	0.93592	14.775	4	0	Median	1.2817	1.0399	NaN	1	0	Median	0.89097	1.0154	NaN	1	0	Median	0.9129	0.86263	NaN	1	0	Median	0.75907	0.75919	NaN	1	0	Median	776520000	391890000	384630000	183300000	75508000	107790000	171950000	84075000	87878000	262300000	136620000	125680000	158970000	95688000	63280000	53503	2927	50399	323538;323539;323540;323541;323542	435731;435732;435733;435734;435735;435736;435737	435733			7	
VDISAPDVDVHGPDWHLK	1	Unmodified	1998.9799	0.97993984	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								1	3	4	71.247	70.676	3;4	9.1569E-17	62772	160511_QHF_FH_JSI10i_2	130.56	125.01			1.0038	1.0184	30.248	8	3	Median	NaN	NaN	NaN	0	0	Median	0.76511	0.9276	NaN	1	0	Median	1.0639	0.98062	47.071	3	2	Median	1.228	1.0655	16.3	4	1	Linear	686020000	325860000	360160000	0	0	0	53719000	32314000	21405000	210260000	98123000	112140000	422040000	195430000	226620000	53504	2286	50400	323543;323544;323545;323546;323547;323548;323549;323550	435738;435739;435740;435741;435742;435743;435744;435745;435746;435747;435748;435749	435745			12	
VDISGNGMGDMGAK	1	Unmodified	1350.5908	0.59078542	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.326	42.109	2	0.04404	37405	160511_QHF_FH_JSI9i_1	38.238	10.909			1.4436	1.1816	NaN	1	0	Median	1.4436	1.1816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43180000	18281000	24899000	43180000	18281000	24899000	0	0	0	0	0	0	0	0	0	53505	3003	50401	323551	435750	435750			1	
VDISQGIPK	1	Unmodified	955.53385	0.53384611	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.236	41.587	2	0.0012639	37819	160511_QHF_FH_JSI12i_1	69.812	19.205			2.4012	2.3332	17.943	4	0	Median	2.4935	2.0508	NaN	1	0	Median	2.3124	2.7365	NaN	1	0	Median	1.9408	1.9189	NaN	1	0	Median	2.525	2.6544	NaN	1	0	Median	743870000	273440000	470430000	139510000	45771000	93736000	216920000	83721000	133200000	230090000	78221000	151870000	157350000	65724000	91625000	53506	4021	50402	323552;323553;323554;323555	435751;435752	435752			2	
VDIVAINDPFIDLNYMVYMFQYDSTHGK	1	Oxidation (M)	3323.5519	0.5518873	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.5	6.23		6	3	1		1			18	8	6	11	4	99.915	94.23	3;4	6.5364E-228	50274	160513_QHF_FH_JSI9Kac_6	310.37	292.16			1.1237	1.1183	11.371	27	2	Median	1.1904	1.0137	11.647	7	1	Median	0.97209	1.1618	9.8675	6	0	Median	1.2057	1.1401	10.312	10	1	Median	0.9074	0.9417	1.0613	4	0	Median	31204000000	15102000000	16102000000	8550400000	3820100000	4730300000	6842200000	3580700000	3261500000	6615800000	3028400000	3587400000	9195300000	4672600000	4522800000	53507	812	50403	323556;323557;323558;323559;323560;323561;323562;323563;323564;323565;323566;323567;323568;323569;323570;323571;323572;323573;323574;323575;323576;323577;323578;323579;323580;323581;323582;323583;323584	435753;435754;435755;435756;435757;435758;435759;435760;435761;435762;435763;435764;435765;435766;435767;435768;435769;435770;435771;435772;435773;435774;435775;435776;435777;435778;435779;435780;435781;435782;435783;435784;435785;435786;435787;435788;435789;435790;435791;435792;435793;435794;435795;435796;435797;435798	435776		334;335	46	
VDIVAINDPFIDLNYMVYMFQYDSTHGK	1	Unmodified	3307.557	0.55697268	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.8		10	8	4	2	1	1		97	48	35	22	18	105.8	98.912	2;3;4	3.5634E-280	52287	160513_QHF_FH_JSI11Kac_6	376.08	366.89			0.98489	1.0517	25.28	106	52	Plateau	1.2444	1.1314	26.662	43	30	Median	0.89883	1.0621	26.878	33	9	Median	1.0363	1.0027	11.82	16	6	Median	1.0079	1.061	27.901	14	7	Median	137130000000	69255000000	67878000000	44514000000	22270000000	22245000000	35594000000	17420000000	18174000000	22999000000	11400000000	11599000000	34026000000	18166000000	15860000000	53508	812	50403	323585;323586;323587;323588;323589;323590;323591;323592;323593;323594;323595;323596;323597;323598;323599;323600;323601;323602;323603;323604;323605;323606;323607;323608;323609;323610;323611;323612;323613;323614;323615;323616;323617;323618;323619;323620;323621;323622;323623;323624;323625;323626;323627;323628;323629;323630;323631;323632;323633;323634;323635;323636;323637;323638;323639;323640;323641;323642;323643;323644;323645;323646;323647;323648;323649;323650;323651;323652;323653;323654;323655;323656;323657;323658;323659;323660;323661;323662;323663;323664;323665;323666;323667;323668;323669;323670;323671;323672;323673;323674;323675;323676;323677;323678;323679;323680;323681;323682;323683;323684;323685;323686;323687;323688;323689;323690;323691;323692;323693;323694;323695;323696;323697;323698;323699;323700;323701;323702;323703;323704;323705;323706;323707	435799;435800;435801;435802;435803;435804;435805;435806;435807;435808;435809;435810;435811;435812;435813;435814;435815;435816;435817;435818;435819;435820;435821;435822;435823;435824;435825;435826;435827;435828;435829;435830;435831;435832;435833;435834;435835;435836;435837;435838;435839;435840;435841;435842;435843;435844;435845;435846;435847;435848;435849;435850;435851;435852;435853;435854;435855;435856;435857;435858;435859;435860;435861;435862;435863;435864;435865;435866;435867;435868;435869;435870;435871;435872;435873;435874;435875;435876;435877;435878;435879;435880;435881;435882;435883;435884;435885;435886;435887;435888;435889;435890;435891;435892;435893;435894;435895;435896;435897;435898;435899;435900;435901;435902;435903;435904;435905;435906;435907;435908;435909;435910;435911;435912;435913;435914;435915;435916;435917;435918;435919;435920;435921;435922;435923;435924;435925;435926;435927;435928;435929;435930;435931;435932;435933;435934;435935;435936;435937;435938;435939;435940;435941;435942;435943;435944;435945;435946;435947;435948;435949;435950;435951;435952;435953;435954;435955;435956;435957;435958;435959;435960;435961;435962;435963	435818			163	
VDIVAINDPFIDLNYMVYMFQYDSTHGK	1	2 Oxidation (M)	3339.5468	0.54680192	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	2	3	96.298	88.056	3;4	4.4793E-156	47455	160513_QHF_FH_JSI12Kac_6	269.57	254.92			1.0625	1.1361	9.576	10	4	Median	1.2649	1.0959	9.7635	2	0	Median	0.96798	1.1599	8.9408	3	2	Median	1.2712	1.199	8.3038	2	0	Median	0.99371	1.0405	1.8575	3	2	Median	4162200000	2052200000	2110100000	689120000	315840000	373280000	887950000	459080000	428870000	555450000	258180000	297260000	2029700000	1019100000	1010600000	53509	812	50403	323708;323709;323710;323711;323712;323713;323714;323715;323716;323717	435964;435965;435966;435967;435968;435969;435970;435971;435972;435973;435974;435975;435976;435977	435971		334;335	14	
VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK	2	Acetyl (K)	4018.9274	0.92738227	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		99.347	91.162	4;5	2.0154E-132	51678	160513_QHF_FH_JSI11Kac_6	239.93	220.16			0.16619	0.15633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16619	0.15633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	309950000	199760000	110190000	0	0	0	88471000	0	88471000	221480000	199760000	21721000	0	0	0	53510	812	50404	323718;323719;323720	435978;435979;435980	435978	448;455		3	
VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK	2	Unmodified	3976.9168	0.91681759	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	97.712	89.623	5	8.3359E-66	53402	160513_QHF_FH_JSI10Kac_6	170.97	162.89			1.2445	1.3362	67.596	3	0	Median	1.6166	1.3745	NaN	1	0	Median	0.35128	0.42039	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2445	1.3362	NaN	1	0	Median	774060000	458630000	315430000	158230000	38339000	119890000	525610000	380950000	144670000	0	0	0	90216000	39339000	50877000	53511	812	50404	323721;323722;323723	435981;435982;435983	435983			3	
VDIVQAAWSPFQR	0	Unmodified	1515.7834	0.78341229	1476	P38435	GGCX	Vitamin K-dependent gamma-carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	4	1	87.404	87.038	2;3	2.882E-12	77342	160511_QHF_FH_JSI10i_2	119.76	107.53			1.0671	1.0626	9.3593	7	5	Median	1.0933	0.9618	NaN	1	1	Median	0.72872	0.88936	NaN	1	1	Median	1.0965	1.1014	9.1819	4	2	Linear	1.008	1.0934	NaN	1	1	Median	264310000	128740000	135570000	32439000	16963000	15476000	38029000	21842000	16187000	168310000	77289000	91021000	25529000	12642000	12887000	53512	1476	50405	323724;323725;323726;323727;323728;323729;323730;323731	435984;435985;435986;435987;435988;435989;435990;435991	435991			8	
VDKIEELDQENEAALENGIK	2	Unmodified	2256.1121	0.11213581	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				63.87	62.937	3	0.0097665	55380	160511_QHF_FH_JSI9i_2	37.683	29.395			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10399000	10399000	0	10399000	10399000	0	0	0	0	0	0	0	0	0	0	53513	1556	50406	323732	435992	435992			1	
VDLAVTRDEAAK	1	Unmodified	1286.683	0.68302954	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	29.105	29.078	3	0.017353	24392	160511_QHF_FH_JSI12i_3	37.998	19.253			0.70732	0.68533	75.496	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2449	1.1688	NaN	1	0	Median	0.40189	0.40184	NaN	1	0	Median	120570000	69571000	51003000	0	0	0	0	0	0	58700000	22598000	36102000	61873000	46973000	14901000	53514	5058	50407	323733;323734	435993	435993			1	
VDLEPEREVMSSEGR	0	Unmodified	1731.8098	0.80976297	5598	Q9Y3L5	RAP2C	Ras-related protein Rap-2c	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	47.763	46.925	2;3	0.0046117	40331	160511_QHF_FH_JSI11i_2	62.303	45.671			1.0076	1.0628	20.122	8	0	Median	1.2544	1.0628	10.234	2	0	Median	1.0076	1.245	0.82707	2	0	Median	1.0737	1.0846	25.874	2	0	Median	0.78784	0.81126	11.551	2	0	Median	533550000	243630000	289920000	137020000	60970000	76055000	157340000	63736000	93606000	156560000	72340000	84215000	82628000	46580000	36048000	53515	5598	50408	323735;323736;323737;323738;323739;323740;323741;323742	435994;435995;435996;435997	435996			4	
VDLGGFAGLFDLK	1	Unmodified	1350.7184	0.71835242	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.575	1	7	3							2	3	4	2	101.99	101.88	2;3	1.2773E-10	89767	160511_QHF_FH_JSI9i_2	174.84	152.75			1.0122	1.0409	36.188	11	2	Median	1.1582	0.95153	13.931	2	1	Median	0.84506	1.0297	26.329	3	0	Plateau	1.062	1.0838	54.868	4	1	Median	1.0607	1.1933	7.6079	2	0	Median	2554400000	1302200000	1252200000	495710000	240460000	255250000	577330000	320310000	257020000	764350000	393030000	371320000	716990000	348420000	368570000	53516	1205	50409	323743;323744;323745;323746;323747;323748;323749;323750;323751;323752;323753	435998;435999;436000;436001;436002;436003;436004	436002			7	
VDLGTLR	0	Unmodified	772.4443	0.44430282	788;967;1352	P10316;P01892;P01891;P30453;P30457;P30459;P16190	HLA-A	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	38.891	38.269	2	0.0095616	34304	160511_QHF_FH_JSI11i_1	78.616	13.858			0.94655	0.9333	12.836	6	0	Median	0.99558	0.87222	NaN	1	0	Median	0.70145	0.84759	13.443	2	0	Median	0.94655	0.94309	1.2962	2	0	Median	1.1214	1.1428	NaN	1	0	Median	612670000	335480000	277200000	98918000	48608000	50310000	179590000	104710000	74884000	301660000	165260000	136400000	32500000	16895000	15605000	53517	967;788;1352	50410	323754;323755;323756;323757;323758;323759	436005;436006;436007;436008	436005			4	
VDLGVLGK	1	Unmodified	799.48035	0.48035398	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.94	4	2	2				3	1		3	3	3	3	57.492	53.193	2	0.0050585	46697	160511_QHF_FH_JSI9i_2	66.799	40.69			1.1128	0.95935	26.34	12	0	Median	1.1645	0.94595	8.2639	3	0	Median	0.71847	0.84985	26.311	3	0	Plateau	1.2417	1.2286	34.093	3	0	Median	0.86114	0.96573	8.0791	3	0	Plateau	2536300000	1179600000	1356700000	716950000	319500000	397450000	561820000	297960000	263860000	466130000	208530000	257600000	791370000	353560000	437810000	53518	1460	50411	323760;323761;323762;323763;323764;323765;323766;323767;323768;323769;323770;323771	436009;436010;436011;436012;436013;436014;436015;436016;436017;436018;436019;436020;436021;436022;436023;436024;436025;436026;436027;436028;436029;436030;436031;436032	436029			24	
VDLIILLFDAHK	1	Unmodified	1395.8126	0.81258715	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	94.837	86.445	3	1.5857E-08	48427	160513_QHF_FH_JSI9Kac_6	105.65	96.161			0.80636	0.92967	21.272	4	0	Linear	0.78451	0.66963	NaN	1	0	Median	0.84745	0.96966	NaN	1	0	Median	0.94028	0.89132	NaN	1	0	Median	1.0322	1.1069	NaN	1	0	Median	309410000	166490000	142920000	102590000	58232000	44354000	83252000	48837000	34415000	80646000	40576000	40070000	42921000	18842000	24079000	53519	5163	50412	323772;323773;323774;323775	436033;436034;436035;436036	436034			4	
VDLKPLLSSLSANK	2	Unmodified	1483.861	0.86099391	4949	Q9NRA8	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	81.125	80.612	3	0.014433	71877	160511_QHF_FH_JSI11i_3	45.863	33.503			0.75753	0.78853	15.734	3	3	Median	1.0535	0.84672	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68348	0.62661	NaN	1	1	Median	0.75753	0.78853	NaN	1	1	Median	98289000	46833000	51456000	29707000	14790000	14917000	0	0	0	28275000	13384000	14891000	40307000	18659000	21648000	53520	4949	50413	323776;323777;323778;323779	436037;436038;436039;436040	436037			4	
VDLNEEETILIIR	0	Unmodified	1555.8457	0.84573777	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									1	2	1	86.539	86.15	2	0.00028733	78477	160511_QHF_FH_JSI12i_1	74.76	47.662			0.88874	0.88264	18.37	4	0	Median	NaN	NaN	NaN	0	0	Median	0.57197	0.66626	NaN	1	0	Median	1.0082	0.9736	7.0894	2	0	Median	0.81614	0.8413	NaN	1	0	Median	74993000	41673000	33320000	0	0	0	27725000	16319000	11406000	28192000	15785000	12407000	19076000	9568700	9507200	53521	1736;1737	50414	323780;323781;323782;323783	436041	436041			1	
VDLNSNGFICDYELHELFK	1	Unmodified	2312.0783	0.078333261	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	100.26	100.08	3	0.00041842	87805	160511_QHF_FH_JSI11i_2	59.342	45.715			1.3224	1.3702	38.015	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.055	1.0472	NaN	1	1	Median	1.6576	1.7927	NaN	1	1	Median	60305000	24545000	35761000	0	0	0	0	0	0	33403000	14081000	19322000	26902000	10464000	16438000	53522	1039	50415	323784;323785	436042;436043	436043			2	
VDLPATSVVITFHNEAR	0	Unmodified	1867.9792	0.97921156	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	76.506	75.946	2;3	1.3395E-11	65882	160511_QHF_FH_JSI12i_3	149.97	137.94			1.0168	1.0864	14.208	7	1	Median	1.3384	1.1499	NaN	1	0	Median	0.90235	1.0864	NaN	1	1	Median	1.1321	1.0953	17.054	2	0	Median	0.95085	0.973	20.943	3	0	Median	669390000	335210000	334180000	38736000	18612000	20123000	56188000	34966000	21222000	227720000	104590000	123130000	346750000	177040000	169710000	53523	2294	50416	323786;323787;323788;323789;323790;323791;323792	436044;436045;436046;436047;436048;436049;436050;436051;436052;436053	436051			10	
VDLPLAVLSK	1	Unmodified	1053.6434	0.64339656	4760	Q9H773	DCTPP1	dCTP pyrophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.472	83.763	2	0.0066265	72411	160511_QHF_FH_JSI12i_2	52.49	48.743			0.94253	0.97354	18.89	4	0	Median	1.2224	1.0107	NaN	1	0	Median	0.58423	0.69197	NaN	1	0	Median	1.015	1.0486	NaN	1	0	Median	0.8752	0.93771	NaN	1	0	Median	77736000	41049000	36687000	25663000	13388000	12274000	17859000	10472000	7386700	21435000	10919000	10516000	12779000	6268700	6510600	53524	4760	50417	323793;323794;323795;323796	436054;436055;436056;436057;436058	436055			5	
VDLQSLPTR	0	Unmodified	1027.5662	0.56620887	4576	Q9C005	DPY30	Protein dpy-30 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	45.452	44.708	2	0.0035082	40329	160511_QHF_FH_JSI11i_1	60.019	39.786			1.0349	1.038	5.3987	7	1	Median	1.243	1.0411	0.41519	2	0	Median	0.86438	1.0611	5.707	2	1	Median	1.0454	1.0465	3.5583	2	0	Median	0.89506	0.92988	NaN	1	0	Median	1225200000	634180000	591030000	258470000	128440000	130030000	365360000	197220000	168140000	407050000	203000000	204040000	194330000	105520000	88811000	53525	4576	50418	323797;323798;323799;323800;323801;323802;323803	436059;436060;436061;436062;436063;436064	436059			6	
VDLSEKYK	2	Acetyl (K)	1022.5284	0.52842638	1556	P43243	MATR3	Matrin-3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	47.51	38.313	2	0.022338	21018	160513_QHF_FH_JSI12Kac_3	60.91	35.016			0.57269	0.60733	49.224	3	0	Median	NaN	NaN	NaN	0	0	Median	0.87954	1.0418	NaN	1	0	Median	0.3969	0.38986	NaN	1	0	Median	0.57269	0.60733	NaN	1	0	Median	37282000	23981000	13301000	0	0	0	9248700	4556800	4692000	18960000	13520000	5439200	9073900	5904100	3169800	53526	1556	50419	323804;323805;323806	436065;436066	436066	1572		2	
VDLSLPNIGIK	1	Unmodified	1167.6863	0.68632401	2209	Q03426	MVK	Mevalonate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	84.838	84.503	2	0.012124	76978	160511_QHF_FH_JSI11i_1	55.064	41.972			1.1598	1.1155	30.056	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1598	1.345	NaN	1	0	Median	1.1608	1.1155	NaN	1	1	Median	0.71881	0.74684	NaN	1	0	Median	37327000	18133000	19194000	0	0	0	17115000	7469500	9645800	11804000	5722900	6081000	8408000	4940900	3467100	53527	2209	50420	323807;323808;323809	436067;436068	436067			2	
VDLSTSTDWK	1	Unmodified	1150.5506	0.55061839	4351	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			48.707	48.283	2	0.0029807	43504	160511_QHF_FH_JSI10i_1	71.349	52.078			0.75322	0.88084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75322	0.88084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92042000	44071000	47971000	0	0	0	92042000	44071000	47971000	0	0	0	0	0	0	53528	4351	50421	323810;323811	436069;436070	436069			2	
VDLTNPQYTVVVEIIK	1	Unmodified	1830.0139	0.013865735	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS		By matching	1	0	2										1		1	100.9	100.81	2	1.6654E-05	91500	160511_QHF_FH_JSI10i_1	116.84	94.792			0.89875	0.99119	9.7078	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7789	0.92543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.037	1.0616	NaN	1	0	Median	70550000	38724000	31826000	0	0	0	37384000	21243000	16141000	0	0	0	33166000	17481000	15685000	53529	5107	50422	323812;323813	436071;436072	436072			2	
VDLTPYPTISSINK	1	Unmodified	1546.8243	0.82427405	362	O43708	GSTZ1	Maleylacetoacetate isomerase	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	71.315	70.782	2	0.00016458	64534	160511_QHF_FH_JSI12i_1	95.094	73.722			1.4895	1.4296	10.679	4	0	Median	1.4858	1.2043	NaN	1	0	Median	1.161	1.3834	NaN	1	0	Median	1.5579	1.4774	NaN	1	0	Median	1.4932	1.5357	NaN	1	0	Median	246510000	102540000	143970000	61050000	26756000	34293000	67841000	28477000	39364000	65634000	26234000	39399000	51983000	21072000	30912000	53530	362	50423	323814;323815;323816;323817	436073;436074	436074			2	
VDLTQVMDDEVFMAFASYATIILSK	1	Unmodified	2806.3809	0.38090579	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.38	5.31		3	2	1	1				1	3	3	2		105.56	102.5	3	1.6252E-64	59228	160513_QHF_FH_JSI10Kac_6	194.68	190.37			0.82011	0.84311	34.533	8	4	Median	1.7814	1.5374	46.408	3	2	Plateau	0.85625	1.0124	34.047	3	2	Plateau	0.76573	0.75243	15.909	2	0	Median	NaN	NaN	NaN	0	0	Median	272810000	150060000	122760000	17680000	8444900	9234800	176940000	98177000	78763000	78193000	43434000	34760000	0	0	0	53531	976	50424	323818;323819;323820;323821;323822;323823;323824;323825	436075;436076;436077;436078;436079;436080;436081;436082;436083;436084;436085;436086;436087;436088;436089	436089			15	
VDLTQVMDDEVFMAFASYATIILSK	1	Acetyl (Protein N-term);Oxidation (M)	2864.3864	0.3863851	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	1	1	0			By MS/MS		11	0				1								1		106.87	97.737	3	0.026086	35559	160513_QHF_FH_JSI11Kac_1	35.32	28.209			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1571700	0	1571700	0	0	0	0	0	0	1571700	0	1571700	0	0	0	53532	976	50424	323826	436090	436090		540	1	
VDLTQVMDDEVFMAFASYATIILSK	1	Oxidation (M)	2822.3758	0.37582041	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	105.27	95.934	3	1.0602E-05	55437	160513_QHF_FH_JSI9Kac_6	80.711	73.265			0.75821	0.83506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75821	0.83506	NaN	1	1	Median	38846000	9723800	29122000	25192000	0	25192000	0	0	0	0	0	0	13653000	9723800	3929700	53533	976	50424	323827;323828	436091;436092	436091		540	2	
VDLVDENFTELRGEIAGPPDTPYEGGR	0	Unmodified	2945.4043	0.40429509	1936	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.67	0.745	3	2	1								2	1	3	90.548	90.166	3	2.0258E-31	78206	160511_QHF_FH_JSI12i_3	144.01	136.89			0.92153	1.0257	35.419	5	3	Median	NaN	NaN	NaN	0	0	Median	0.88709	1.0483	3.0835	2	2	Median	NaN	NaN	NaN	0	0	Median	1.02	1.0399	44.644	3	1	Plateau	238180000	145080000	93100000	0	0	0	92089000	68597000	23491000	8954200	0	8954200	137140000	76483000	60654000	53534	1936	50425	323829;323830;323831;323832;323833;323834	436093;436094;436095;436096;436097;436098;436099;436100;436101;436102;436103	436103			11	
VDLVLLGK	1	Unmodified	855.54295	0.54295423	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.32	4	4	2				3	4		3	5	4	5	71.877	67.076	2	0.00068191	58475	160511_QHF_FH_JSI12i_2	100.19	60.085			1.0538	1.0448	19.764	17	0	Median	1.2345	1.0448	1.9859	3	0	Median	0.93807	1.1249	30.307	5	0	Median	1.1274	1.1232	13.394	4	0	Median	0.91987	0.99638	7.7137	5	0	Median	1906800000	994170000	912610000	289550000	152630000	136920000	527130000	280980000	246140000	522010000	253340000	268670000	568100000	307220000	260880000	53535	1473	50426	323835;323836;323837;323838;323839;323840;323841;323842;323843;323844;323845;323846;323847;323848;323849;323850;323851	436104;436105;436106;436107;436108;436109;436110;436111;436112;436113;436114;436115;436116;436117;436118;436119;436120;436121;436122;436123;436124;436125;436126;436127;436128;436129;436130;436131;436132;436133	436108			30	
VDLVLMHWR	0	Unmodified	1167.6223	0.62228396	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	77.36	70.577	3	1.0441E-05	37438	160513_QHF_FH_JSI9Kac_6	105.52	81.771			1.0719	1.0376	20.729	5	0	Median	1.1947	1.0376	NaN	1	0	Median	0.94146	1.1283	NaN	1	0	Median	1.0719	1.0095	NaN	1	0	Median	1.245	1.3062	33.389	2	0	Median	1054400000	527340000	527060000	279300000	133150000	146140000	448910000	234050000	214860000	165920000	80612000	85307000	160280000	79527000	80751000	53536	486	50427	323852;323853;323854;323855;323856	436134;436135;436136;436137;436138;436139;436140;436141;436142	436137			8	
VDLWNASNLK	1	Unmodified	1158.6033	0.60332266	2550	Q14644	RASA3	Ras GTPase-activating protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	27.177	25.901	3	0.054682	21676	160511_QHF_FH_JSI12i_2	16.254	3.6771			1.2061	1.3326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2061	1.3326	NaN	1	0	Median	30713000	11163000	19550000	0	0	0	0	0	0	0	0	0	30713000	11163000	19550000	53537	2550	50428	323857	436143	436143			1	
VDLYQQASPPDALR	0	Unmodified	1571.7944	0.79437091	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			57.5	57.106	2	0.0019071	51559	160511_QHF_FH_JSI10i_1	59.198	43.061			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53538	1628	50429	323858	436144	436144			1	
VDMMDLPR	0	Acetyl (Protein N-term)	1017.4623	0.46233743	1427	P35244	RPA3	Replication protein A 14 kDa subunit	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	79.415	78.943	2	0.00084823	71839	160511_QHF_FH_JSI11i_1	82.716	69.509			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53539	1427	50430	323859;323860;323861;323862	436145;436146;436147;436148;436149	436145			5	
VDMTFEEEAQLLQLK	1	Unmodified	1792.8917	0.89170169	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										3	2	1	97.329	97.211	2;3	9.5505E-28	88050	160511_QHF_FH_JSI10i_1	156.36	131.98			0.86336	0.9078	13.904	5	1	Median	NaN	NaN	NaN	0	0	Median	0.7659	0.89242	22.854	2	1	Median	0.91085	0.88275	15.677	2	0	Median	0.86336	0.9078	NaN	1	0	Median	150950000	84005000	66941000	0	0	0	78116000	41974000	36143000	31929000	15850000	16079000	40901000	26182000	14719000	53540	2528	50431	323863;323864;323865;323866;323867;323868	436150;436151;436152;436153;436154;436155;436156	436156			7	
VDMVWIVGGSSVYK	1	Unmodified	1538.7803	0.78030075	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.97		6							5	2	3	3	3	86.572	82.568	2;3	1.06E-24	41928	160513_QHF_FH_JSI11Kac_6	160.15	149.92			1.057	0.79856	25.303	9	1	Linear	1.1043	0.95689	8.7128	2	0	Median	0.743	0.8869	22.474	2	0	Median	0.84119	0.80631	37.48	3	1	Plateau	0.98987	1.067	32.206	2	0	Median	772670000	424010000	348660000	185060000	85906000	99150000	205800000	131510000	74290000	234070000	128260000	105810000	147740000	78327000	69412000	53541	763	50432	323869;323870;323871;323872;323873;323874;323875;323876;323877;323878;323879	436157;436158;436159;436160;436161;436162;436163;436164;436165;436166;436167;436168;436169;436170;436171;436172;436173;436174;436175;436176	436160			20	
VDNAYWLWTFQGR	0	Unmodified	1654.7892	0.78922595	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.79		8	3						8	4	4	6	5	91.044	87.226	2;3	7.5665E-32	43668	160513_QHF_FH_JSI11Kac_6	182.71	167.7			1.0779	1.0493	20.987	18	2	Plateau	1.4349	1.2306	28.979	4	1	Median	0.87939	1.0429	13.235	4	0	Median	1.0928	0.8237	18.968	6	1	Linear	0.93681	0.99219	20.962	4	0	Median	9515400000	4689500000	4825900000	1865000000	710580000	1154400000	3610500000	1841300000	1769200000	1976800000	1023700000	953140000	2063100000	1114000000	949150000	53542	1867	50433	323880;323881;323882;323883;323884;323885;323886;323887;323888;323889;323890;323891;323892;323893;323894;323895;323896;323897;323898	436177;436178;436179;436180;436181;436182;436183;436184;436185;436186;436187;436188;436189;436190;436191;436192;436193;436194;436195;436196;436197;436198;436199;436200;436201;436202;436203;436204;436205	436181			27	
VDNDENEHQLSLR	0	Unmodified	1567.7227	0.72266253	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.88	9	12	9				3	7	2	9	10	11	12	25.993	22.761	2;3	1.2788E-41	20332	160511_QHF_FH_JSI10i_1	209.99	193.36			1.0204	1.0344	10.58	40	10	Median	1.1877	0.99467	8.1867	8	2	Median	0.81526	0.96874	11.015	10	3	Median	1.0975	1.0629	12.057	10	2	Median	0.9894	1.0563	8.1703	12	3	Median	64403000000	31497000000	32905000000	9981700000	4162800000	5819000000	13477000000	7399000000	6077900000	24325000000	11625000000	12700000000	16619000000	8310100000	8309000000	53543	857	50434	323899;323900;323901;323902;323903;323904;323905;323906;323907;323908;323909;323910;323911;323912;323913;323914;323915;323916;323917;323918;323919;323920;323921;323922;323923;323924;323925;323926;323927;323928;323929;323930;323931;323932;323933;323934;323935;323936;323937;323938;323939;323940	436206;436207;436208;436209;436210;436211;436212;436213;436214;436215;436216;436217;436218;436219;436220;436221;436222;436223;436224;436225;436226;436227;436228;436229;436230;436231;436232;436233;436234;436235;436236;436237;436238;436239;436240;436241;436242;436243;436244;436245;436246;436247;436248;436249;436250;436251;436252;436253;436254;436255;436256;436257;436258;436259;436260;436261;436262;436263;436264;436265;436266;436267;436268;436269;436270;436271;436272;436273;436274;436275;436276;436277;436278;436279;436280	436234			75	
VDNDENEHQLSLRTVSLGAGAK	1	Unmodified	2352.167	0.16696535	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		49.398	48.614	4	0.0018406	42731	160511_QHF_FH_JSI11i_3	44.105	35.504			0.28791	0.29171	6.6335	2	2	Median	NaN	NaN	NaN	0	0	Median	0.24978	0.27834	NaN	1	1	Median	0.33185	0.30572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49551000	42162000	7389400	0	0	0	21011000	18650000	2361400	28540000	23512000	5028000	0	0	0	53544	857	50435	323941;323942	436281;436282	436281			2	
VDNEFDQR	0	Unmodified	1021.4465	0.44648767	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	17.363	14.581	2	0.0052221	12624	160511_QHF_FH_JSI10i_1	66.299	48.532			0.9138	0.94002	4.2265	6	0	Median	1.1658	0.96265	NaN	1	0	Median	0.77819	0.90727	7.2788	2	0	Median	0.96092	0.94002	0.21336	2	0	Median	0.88071	0.89963	NaN	1	0	Median	819380000	412790000	406580000	189440000	91037000	98403000	226700000	116410000	110290000	216960000	105030000	111930000	186280000	100310000	85970000	53545	2517	50436	323943;323944;323945;323946;323947;323948	436283;436284;436285;436286;436287;436288	436288			6	
VDNIQAGELTEGIWR	0	Unmodified	1699.8529	0.85294842	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	2	1	1	77.412	76.775	2;3	5.0601E-07	67703	160511_QHF_FH_JSI9i_2	138.42	121.4			0.96174	0.92092	9.4138	6	1	Median	1.0457	0.89435	4.1977	2	0	Median	0.752	0.86221	9.2602	2	1	Median	1.0432	1.039	NaN	1	0	Median	0.9156	1.0133	NaN	1	0	Median	417420000	192780000	224640000	119530000	53843000	65689000	131760000	60273000	71490000	63694000	29851000	33843000	102430000	48815000	53614000	53546	2277	50437	323949;323950;323951;323952;323953;323954	436289;436290;436291;436292;436293;436294;436295;436296;436297;436298	436297			10	
VDNIQAGELTEGIWRR	0	Unmodified	1855.9541	0.95405945	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			69.127	67.655	3	0.011682	56607	160511_QHF_FH_JSI10i_3	37.092	26.624			1.1381	1.2821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1381	1.2821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31283000	16537000	14746000	0	0	0	31283000	16537000	14746000	0	0	0	0	0	0	53547	2277	50438	323955	436299;436300	436299			2	
VDNLSDEGALNISDR	0	Unmodified	1616.7642	0.76419299	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		51.859	51.185	2	0.00084418	46377	160511_QHF_FH_JSI11i_1	67.019	55.855			2.0793	2.4133	12.294	3	0	Plateau	2.7418	2.3226	NaN	1	0	Median	2.0793	2.4133	NaN	1	0	Median	2.0454	1.9184	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	201100000	67656000	133450000	66009000	26187000	39822000	71267000	18912000	52355000	63826000	22556000	41270000	0	0	0	53548	700	50439	323956;323957;323958	436301;436302	436301			2	
VDNLTYR	0	Unmodified	879.44503	0.4450311	2165;4375	Q01130;Q9BRL6	SRSF2;SRSF8	Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	5.95	3	4				2	3			2	3	4	3	22.361	18.638	2	0.0020089	11871	160513_QHF_FH_JSI11Kac_4	104.45	66.802			1.0072	1.0496	7.4953	12	0	Median	1.2257	1.0357	7.1483	2	0	Median	0.8781	1.0502	11.187	3	0	Median	1.0591	1.0113	6.9892	4	0	Median	1.0307	1.1339	8.1499	3	0	Plateau	3159500000	1540400000	1619100000	747260000	331480000	415770000	1107600000	600130000	507500000	1099100000	493450000	605700000	205450000	115330000	90122000	53549	2165;4375	50440	323959;323960;323961;323962;323963;323964;323965;323966;323967;323968;323969;323970	436303;436304;436305;436306;436307;436308;436309;436310	436307			8	
VDNMIIQSISLLDQLDK	1	Unmodified	1944.0238	0.023778495	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	102.63	102.5	3	4.0127E-06	90331	160511_QHF_FH_JSI11i_2	100.77	84.635			0.90911	0.93078	26	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.154	1.1186	NaN	1	1	Median	0.71619	0.77447	NaN	1	0	Median	50041000	27159000	22882000	0	0	0	0	0	0	17529000	8716400	8813100	32511000	18443000	14068000	53550	153	50441	323971;323972	436311;436312	436312			2	
VDNNAIEFLLLQASDGIHHWTPPK	1	Unmodified	2714.3816	0.38164957	1713	P50583	NUDT2	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.57	6.43			4						3	1		3	3	99.078	95.103	4	4.8619E-34	46923	160513_QHF_FH_JSI12Kac_6	156.28	130.61			1.1739	1.1102	11.875	7	4	Median	1.6593	1.3996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.184	1.1092	8.8343	3	2	Median	1.0811	1.1102	9.6136	3	2	Median	1544300000	780340000	763930000	127130000	40733000	86396000	0	0	0	589930000	309200000	280730000	827210000	430410000	396810000	53551	1713	50442	323973;323974;323975;323976;323977;323978;323979	436313;436314;436315;436316;436317;436318;436319;436320	436319			8	
VDNPDSEK	1	Unmodified	902.39814	0.39814049	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	5.9004	5.7954	2	0.0059601	3916	160511_QHF_FH_JSI12i_1	60.589	37.066			0.35097	0.34781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35097	0.34781	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	201150000	152290000	48865000	0	0	0	0	0	0	201150000	152290000	48865000	0	0	0	53552	3258	50443	323980;323981	436321;436322	436322			2	
VDNSSLTGESEPQTR	0	Unmodified	1618.7435	0.74345755	821;1032	P05023;P20648;P13637	ATP1A1;ATP4A;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	5.8	7				3	4				2	5	4	3	26.298	22.19	2;3	3.2096E-53	19766	160511_QHF_FH_JSI12i_1	225.23	211.42			0.90476	0.94274	18.71	13	2	Median	1.1852	0.97512	7.7197	2	1	Median	0.7282	0.86023	12.441	4	1	Median	0.9696	0.9411	32.958	4	0	Median	0.90476	0.95744	3.6064	3	0	Median	2223800000	1167100000	1056700000	468090000	204910000	263170000	558580000	335420000	223160000	561310000	296560000	264750000	635810000	330190000	305620000	53553	821;1032	50444	323982;323983;323984;323985;323986;323987;323988;323989;323990;323991;323992;323993;323994;323995	436323;436324;436325;436326;436327;436328;436329;436330;436331;436332;436333;436334;436335;436336;436337;436338;436339;436340;436341;436342;436343	436328			21	
VDPAFDK	1	Unmodified	790.38612	0.38611924	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	22.565	21.899	2	0.013927	18986	160511_QHF_FH_JSI10i_1	67.032	56.216			1.399	1.2379	5.5321	3	0	Plateau	1.5142	1.2379	NaN	1	0	Median	1.0165	1.1837	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2814	1.3214	NaN	1	0	Median	498250000	248890000	249350000	171720000	87287000	84430000	155190000	80477000	74716000	0	0	0	171340000	81131000	90207000	53554	346	50445	323996;323997;323998	436344;436345;436346;436347	436345			4	
VDPALFPPVPLFTAVPSR	0	Unmodified	1922.0666	0.066570008	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		2	0		3								1	1	1		102.16	102.08	3	2.4025E-05	89970	160511_QHF_FH_JSI9i_2	75.97	68.912			1.7867	2.1726	24.936	3	1	Median	2.8152	2.4128	NaN	1	0	Median	1.7867	2.1726	NaN	1	0	Median	1.4891	1.501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155460000	60019000	95438000	28728000	10057000	18671000	51955000	18761000	33194000	74774000	31201000	43573000	0	0	0	53555	2466	50446	323999;324000;324001	436348;436349	436348			2	
VDPEDTNLNQDSAK	1	Unmodified	1544.6954	0.69544472	2883	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.501	26.919	2	5.148E-05	23817	160511_QHF_FH_JSI11i_1	117.25	93.264			0.83745	0.85129	9.673	4	3	Median	0.92551	0.75545	NaN	1	1	Median	0.78075	0.91691	NaN	1	0	Median	0.81532	0.79665	NaN	1	1	Median	0.86018	0.90968	NaN	1	1	Median	208430000	108810000	99618000	56104000	29365000	26739000	47064000	22676000	24388000	55099000	29945000	25154000	50166000	26828000	23338000	53556	2883	50447	324002;324003;324004;324005	436350;436351;436352;436353;436354	436350			5	
VDPGLGGPLVPDLEK	1	Unmodified	1504.8137	0.81370936	712	O95630	STAMBP	STAM-binding protein	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	4									1		1	2	79.748	79.185	2;3	0.00065986	72175	160511_QHF_FH_JSI12i_1	87.216	56.419			0.76284	0.76062	25.405	4	2	Median	1.2845	1.0517	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68933	0.66976	NaN	1	0	Median	0.71007	0.71863	26.023	2	1	Median	158130000	79149000	78985000	70034000	30467000	39567000	0	0	0	13439000	7062700	6376100	74662000	41620000	33042000	53557	712	50448	324006;324007;324008;324009	436355;436356;436357	436356			3	
VDPLETELGVK	1	Unmodified	1198.6445	0.64451877	2227	Q05086	UBE3A	Ubiquitin-protein ligase E3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	62.401	61.684	2	2.6534E-05	56281	160511_QHF_FH_JSI12i_1	99.653	79.324			0.90015	0.91471	5.3468	3	1	Plateau	1.1533	0.95599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90015	0.86814	NaN	1	1	Median	0.84138	0.87521	NaN	1	0	Median	135220000	77044000	58181000	45806000	18804000	27002000	0	0	0	48188000	32608000	15580000	41230000	25632000	15599000	53558	2227	50449	324010;324011;324012	436358;436359;436360	436359			3	
VDPLFTELLNGIR	0	Unmodified	1485.8191	0.81912909	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	101.89	101.77	2	1.1027E-07	87652	160511_QHF_FH_JSI12i_2	139.86	92.255			0.98261	0.83924	16.007	3	0	Median	0.98261	0.83924	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0697	1.0873	NaN	1	0	Median	0.70924	0.81159	NaN	1	0	Median	724330000	368010000	356320000	151740000	78147000	73597000	0	0	0	273200000	108230000	164980000	299390000	181640000	117750000	53559	3860	50450	324013;324014;324015	436361;436362	436361			2	
VDPLVSLMMVEK	1	Unmodified	1359.7142	0.71419502	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.567	1	6	2							1	2	3	3	98.065	97.929	2;3	3.8945E-05	86095	160511_QHF_FH_JSI11i_2	103.34	93.545			1.0922	1.1217	40.963	8	3	Median	1.2285	1.0521	NaN	1	0	Median	0.68078	0.78325	49.915	2	1	Median	1.0536	1.0666	44.604	3	1	Plateau	1.0731	1.1767	5.8993	2	1	Median	418050000	186820000	231230000	85754000	33377000	52376000	77468000	39720000	37747000	139150000	62466000	76688000	115670000	51255000	64420000	53560	1984	50451	324016;324017;324018;324019;324020;324021;324022;324023;324024	436363;436364;436365;436366;436367;436368;436369;436370;436371;436372;436373;436374;436375;436376;436377;436378	436373			16	
VDPMAIVVFHQADIGEYVR	0	Unmodified	2158.0881	0.088110086	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.859	80.916	3	8.6167E-08	46615	160513_QHF_FH_JSI10Kac_6	97.457	81.692			0.98745	0.89921	23.066	3	0	Plateau	0.86023	0.74345	NaN	1	0	Median	0.99882	1.1766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84484	0.89921	NaN	1	0	Median	245590000	137390000	108200000	68435000	41638000	26797000	131410000	70794000	60619000	0	0	0	45745000	24961000	20784000	53561	5484	50452	324025;324026;324027	436379;436380;436381;436382	436381			4	
VDPMAIVVFHQADIGEYVRHEETLT	0	Unmodified	2868.4116	0.41162907	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.82	100.84	4	3.0637E-05	87427	160511_QHF_FH_JSI12i_3	53.266	46.391			1.3123	1.3617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3123	1.3617	NaN	1	0	Median	114890000	55367000	59526000	0	0	0	0	0	0	0	0	0	114890000	55367000	59526000	53562	5484	50453	324028	436383	436383			1	
VDPQLVDGHLSYFLGAIGMPGLTSLIGIQEK	1	Unmodified	3267.7213	0.72133589	3567	Q8N8N7	PTGR2	Prostaglandin reductase 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.895	93.174	4	0.018317	54592	160513_QHF_FH_JSI10Kac_6	36.215	23.869			0.39053	0.46321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39053	0.46321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136800000	109390000	27415000	0	0	0	136800000	109390000	27415000	0	0	0	0	0	0	53563	3567	50454	324029	436384	436384			1	
VDPSHDASK	1	Unmodified	954.44067	0.44067401	512;2527	O75369;Q14315	FLNB;FLNC	Filamin-B;Filamin-C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	2	2	2	5.7177	2.9756	2	0.00068449	2939	160511_QHF_FH_JSI9i_1	76.064	54.764			1.0479	1.1606	15.474	6	0	Median	1.7045	1.4059	NaN	1	0	Median	1.0639	1.2468	NaN	1	0	Median	1.1345	1.1202	17.939	2	0	Median	0.95107	1.0145	8.8867	2	0	Median	834920000	374610000	460310000	188870000	60532000	128340000	194780000	103440000	91339000	213240000	94887000	118360000	238030000	115750000	122280000	53564	512;2527	50455	324030;324031;324032;324033;324034;324035;324036	436385;436386;436387;436388;436389;436390;436391;436392	436390			8	
VDPSLMEDSDDGPSLPTK	1	Unmodified	1901.8564	0.85643839	270	O15258	RER1	Protein RER1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.656	63.017	2	1.252E-05	57375	160511_QHF_FH_JSI12i_1	86.467	73.039			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53565	270	50456	324037	436393	436393			1	
VDPSQPIDLTQLVNGR	0	Unmodified	1750.9214	0.92136233	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	86.07	85.559	2	2.8012E-05	77967	160511_QHF_FH_JSI11i_1	112.5	92.292			1.0637	0.99775	4.3353	4	3	Median	1.2299	0.98235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0637	1.0414	5.2197	2	2	Median	0.95098	0.99187	NaN	1	0	Median	170150000	83155000	86994000	41356000	21241000	20115000	0	0	0	90378000	43610000	46769000	38415000	18305000	20110000	53566	5173	50457	324038;324039;324040;324041	436394;436395;436396;436397;436398	436395			5	
VDPVNFK	1	Unmodified	817.4334	0.43340378	49;2079	CON__P01966;P02008;P69905	HBZ;HBA1	Hemoglobin subunit zeta;Hemoglobin subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		34.446	33.836	2	0.035052	30289	160511_QHF_FH_JSI11i_1	50.966	21.159		+	1.3328	1.111	20.78	3	3	Median	1.3328	1.111	NaN	1	1	Median	0.79688	0.94302	NaN	1	1	Median	1.4483	1.4248	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	307490000	86550000	220940000	95563000	41960000	53603000	95822000	23397000	72425000	116100000	21193000	94910000	0	0	0	53567	49;2079	50458	324042;324043;324044	436399;436400;436401	436399			3	
VDPVVIMQVIHPDGTK	1	Unmodified	1746.9338	0.93384128	4362	Q9BQG2	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				86.287	85.757	3	0.050823	75578	160511_QHF_FH_JSI9i_2	26.548	18.634			0.94001	0.80743	NaN	1	1	Median	0.94001	0.80743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10932000	4716700	6215500	10932000	4716700	6215500	0	0	0	0	0	0	0	0	0	53568	4362	50459	324045	436402	436402			1	
VDQALHTQTDADPAEEYAR	0	Unmodified	2128.9661	0.96614027	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	37.449	36.837	2;3	5.7628E-33	33193	160511_QHF_FH_JSI11i_1	188.19	182.65			1.0022	1.0302	5.4168	8	0	Median	1.3026	1.0897	2.0297	2	0	Median	0.88391	1.0449	1.9417	2	0	Median	1.0217	0.9925	2.2036	2	0	Median	0.94544	0.97992	7.0061	2	0	Median	2083600000	995070000	1088600000	398090000	182430000	215660000	505710000	234460000	271250000	616740000	286000000	330740000	563110000	292180000	270920000	53569	1787	50460	324046;324047;324048;324049;324050;324051;324052;324053	436403;436404;436405;436406;436407;436408;436409;436410;436411;436412;436413;436414;436415;436416;436417	436404			15	
VDQEIINIMQDR	0	Unmodified	1472.7293	0.72932781	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	3.8	5	4					1			3	3	2	2	70.386	68.657	2	1.6811E-41	59266	160511_QHF_FH_JSI12i_2	199.43	182.8			1.0965	1.1284	23.968	10	1	Median	1.4027	1.1459	13.561	3	1	Median	1.0885	1.2728	29.875	3	0	Median	1.0272	1.0222	11.807	2	0	Median	0.88783	0.93897	3.8403	2	0	Median	1579500000	770530000	809000000	384560000	160840000	223710000	404250000	198770000	205480000	485140000	227200000	257940000	305580000	183720000	121860000	53570	750	50461	324054;324055;324056;324057;324058;324059;324060;324061;324062;324063	436418;436419;436420;436421;436422;436423;436424;436425;436426;436427;436428;436429;436430;436431;436432	436421			15	
VDQETLTEMVKPSIDYVR	1	Unmodified	2122.0616	0.061620564	4980	Q9NS86	LANCL2	LanC-like protein 2	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	79.148	77.946	3	0.00080903	67429	160511_QHF_FH_JSI12i_2	53.779	37.837			0.89359	0.96717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89359	0.96717	NaN	1	0	Median	31324000	11346000	19978000	0	0	0	0	0	0	0	0	0	31324000	11346000	19978000	53571	4980	50462	324064	436433	436433			1	
VDQGTLFELILAANYLDIK	1	Unmodified	2135.1514	0.15142185	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	13.4	5.2			1						4	2	2		1	100.46	92.948	2;3	1.6493E-121	55707	160513_QHF_FH_JSI10Kac_6	288.82	259.49			0.83056	0.88936	13.984	4	0	Linear	0.82668	0.71389	NaN	1	0	Median	0.8048	0.95424	4.9694	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80926	0.85853	NaN	1	0	Median	1306300000	731060000	575290000	365530000	193160000	172370000	599660000	343660000	256000000	0	0	0	341150000	194240000	146910000	53572	2057	50463	324065;324066;324067;324068;324069	436434;436435;436436;436437;436438;436439;436440;436441	436440			8	
VDQIIMAK	1	Oxidation (M)	932.5001	0.50010314	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS		By MS/MS		1	0	2									1		1		34.261	33.518	2	0.03381	29354	160511_QHF_FH_JSI9i_1	67.981	27.713			1.5348	1.363	24.941	2	2	Median	2.0229	1.6258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1645	1.1426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	367810000	162040000	205770000	177540000	65033000	112510000	0	0	0	190270000	97011000	93254000	0	0	0	53573	1721	50464	324070;324071	436442;436443	436443			2	
VDQIIMAK	1	Unmodified	916.50519	0.50518852	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS			By MS/MS	5.33	6.13	2						1			1			2	37.46	33.536	2	0.0071248	29289	160511_QHF_FH_JSI9i_1	60.478	14.462			0.86875	0.72798	55.994	3	2	Median	0.86875	0.72798	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75038	0.80342	78.776	2	2	Median	3142800000	1634700000	1508000000	1752600000	816520000	936120000	0	0	0	0	0	0	1390100000	818200000	571930000	53574	1721	50464	324072;324073;324074	436444;436445;436446	436445			3	
VDQIQEIVTGNPTVIK	1	Unmodified	1752.9622	0.96216452	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	72.691	72.19	2;3	7.167E-11	63979	160511_QHF_FH_JSI9i_1	153.39	126.61			0.95631	1.0122	9.5577	10	4	Median	1.2874	1.0454	2.0279	2	0	Median	0.85809	1.0122	1.9961	2	0	Median	0.96427	0.93569	13.805	3	2	Median	0.86188	0.89775	13.269	3	2	Median	1780600000	888880000	891680000	317130000	146480000	170650000	252780000	123560000	129230000	662660000	340350000	322310000	547980000	278490000	269500000	53575	1600	50465	324075;324076;324077;324078;324079;324080;324081;324082;324083;324084	436447;436448;436449;436450;436451;436452;436453;436454;436455;436456;436457;436458;436459;436460;436461	436459			15	
VDQMEGGAAGPSASVR	0	Unmodified	1530.7097	0.709655	620	O94901	SUN1	SUN domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			25.524	25.221	2	0.0039483	22198	160511_QHF_FH_JSI10i_1	62.287	53.283			0.59099	0.66222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59099	0.66222	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20335000	13971000	6364000	0	0	0	20335000	13971000	6364000	0	0	0	0	0	0	53576	620	50466	324085;324086	436462;436463	436462			2	
VDQSAVGFEYQGK	1	Unmodified	1426.6729	0.67285879	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	44.091	40.946	2	9.8892E-41	36896	160511_QHF_FH_JSI11i_1	199.7	179.71			0.8706	0.94218	9.0717	7	2	Median	1.1012	0.91922	NaN	1	0	Median	0.85262	1.0021	4.0716	2	0	Median	0.9746	0.95093	1.307	2	0	Median	0.77757	0.83118	10.139	2	2	Median	1216800000	677070000	539770000	205630000	95212000	110420000	247700000	136120000	111570000	229880000	131670000	98208000	533640000	314070000	219570000	53577	2522	50467	324087;324088;324089;324090;324091;324092;324093	436464;436465;436466;436467;436468;436469;436470;436471;436472	436464			9	
VDQSILTGESVSVIK	1	Unmodified	1573.8563	0.85630246	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.75	8		2				2			3	4	3	2	70.633	68.151	2;3	1.0439E-09	62423	160511_QHF_FH_JSI11i_1	171.29	127.78			0.87032	0.93438	23.262	11	3	Median	1.2383	1.012	11.292	2	0	Median	0.85713	1.011	31.637	4	2	Median	0.87032	0.84862	24.185	3	1	Median	0.83531	0.88284	3.8794	2	0	Median	2257100000	1202900000	1054300000	469420000	229080000	240340000	673850000	368040000	305810000	577180000	316300000	260880000	536700000	289440000	247250000	53578	1103	50468	324094;324095;324096;324097;324098;324099;324100;324101;324102;324103;324104;324105	436473;436474;436475;436476;436477;436478;436479;436480;436481;436482;436483;436484;436485;436486;436487;436488;436489;436490;436491	436473			19	
VDQSLHTNTSLDAASEYAK	1	Unmodified	2048.9651	0.96507764	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	45.905	45.229	3	1.0116E-10	41183	160511_QHF_FH_JSI12i_1	101.48	91.01			1.0187	0.94097	11.946	4	0	Median	1.0597	0.88183	NaN	1	0	Median	0.6956	0.80517	NaN	1	0	Median	1.0338	1.0041	NaN	1	0	Median	1.0039	1.0439	NaN	1	0	Median	436360000	224320000	212040000	87270000	38224000	49046000	100120000	60001000	40119000	98799000	54886000	43913000	150180000	71211000	78964000	53579	4551	50469	324106;324107;324108;324109	436492;436493;436494;436495;436496;436497	436495			6	
VDQSTTSMAK	1	Unmodified	1066.4965	0.49647433	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	10.865	10.582	2	0.00070173	8225	160511_QHF_FH_JSI11i_1	79.148	38.88			2.7392	2.7832	65.345	4	4	Linear	NaN	NaN	NaN	0	0	Median	0.64126	0.7452	NaN	1	1	Median	0.87062	0.84648	NaN	1	1	Median	1.6408	1.7106	82.717	2	2	Median	312710000	136910000	175800000	0	0	0	49531000	28270000	21261000	74822000	33117000	41705000	188360000	75522000	112830000	53580	3203	50470	324110;324111;324112;324113;324114;324115	436498;436499;436500;436501;436502;436503	436499			6	
VDQVIILYSGDK	1	Unmodified	1348.7238	0.72383172	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.28	4					1	2			1	4	1	1	66.787	62.52	2	3.9125E-05	31457	160513_QHF_FH_JSI10Kac_3	106.49	93.536			0.91949	1.0018	28.755	5	2	Median	1.1835	1.0018	NaN	1	1	Median	1.1145	1.3149	27.644	2	0	Median	0.81661	0.78075	NaN	1	0	Median	0.77378	0.80927	NaN	1	1	Median	141210000	71502000	69709000	29823000	11025000	18797000	15393000	8009600	7383400	47380000	24630000	22750000	48616000	27837000	20779000	53581	2080	50471	324116;324117;324118;324119;324120;324121;324122	436504;436505;436506;436507;436508;436509;436510;436511	436511			7	
VDQYLYHMR	0	Unmodified	1223.5757	0.5757277	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				41.711	32.601	3	0.052622	17504	160513_QHF_FH_JSI9Kac_6	33.229	26.996			1.2152	1.0027	NaN	1	0	Median	1.2152	1.0027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6701000	2865200	3835900	6701000	2865200	3835900	0	0	0	0	0	0	0	0	0	53582	1785	50472	324123	436512	436512			0	
VDRDYVLK	1	Unmodified	1006.5447	0.54474515	4448	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	4	1	2	21.326	20.694	2;3	0.0021071	17422	160511_QHF_FH_JSI11i_3	60.436	44.774			0.82795	0.87358	23.713	8	0	Median	1.8103	1.5501	NaN	1	0	Median	0.7693	0.92112	19.951	4	0	Median	0.94308	0.90445	NaN	1	0	Median	0.81151	0.83203	0.30075	2	0	Median	1553300000	818600000	734680000	111390000	33680000	77708000	336440000	192000000	144440000	439080000	253980000	185100000	666380000	338950000	327430000	53583	4448	50473	324124;324125;324126;324127;324128;324129;324130;324131	436513;436514;436515;436516;436517;436518;436519;436520;436521;436522;436523	436514			11	
VDREQLVQK	1	Acetyl (Protein N-term)	1155.6248	0.62478638	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	30.159	29.403	2	4.5923E-07	26213	160511_QHF_FH_JSI11i_1	89.55	72.774			0.78455	0.86515	42.857	8	2	Median	0.58228	0.48758	79.463	2	1	Median	0.67969	0.81575	15.933	2	1	Median	0.84272	0.83257	18.326	2	0	Median	0.8968	0.9929	17.844	2	0	Median	7387100000	4033200000	3353900000	1620900000	795500000	825440000	1836800000	1006100000	830750000	1611600000	930320000	681310000	2317700000	1301300000	1016400000	53584	1976	50474	324132;324133;324134;324135;324136;324137;324138;324139	436524;436525;436526;436527;436528;436529;436530;436531;436532;436533;436534	436525			11	
VDRLMELHFK	1	Unmodified	1286.6805	0.68052712	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				50.066	48.461	4	0.057371	39743	160511_QHF_FH_JSI9i_3	23.376	15.651			3.096	2.6473	NaN	1	1	Median	3.096	2.6473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8316600	1775200	6541400	8316600	1775200	6541400	0	0	0	0	0	0	0	0	0	53585	3817	50475	324140	436535	436535			1	
VDSAATSGYEIGNPPDYR	0	Unmodified	1910.8646	0.86463532	1247	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	2	3	4	50.078	49.4	2;3	1.5541E-160	44855	160511_QHF_FH_JSI11i_1	308.42	290.83			0.99384	1.006	8.7916	8	0	Median	1.3159	1.0909	3.6896	2	0	Median	0.82627	0.97365	3.5666	2	0	Median	1.1278	1.1019	17.05	2	0	Median	0.96818	1.0051	1.1736	2	0	Median	1074000000	535190000	538790000	266070000	124370000	141700000	246050000	131070000	114980000	278430000	140220000	138220000	283420000	139530000	143890000	53586	1247	50476	324141;324142;324143;324144;324145;324146;324147;324148;324149;324150;324151;324152	436536;436537;436538;436539;436540;436541;436542;436543;436544;436545;436546;436547;436548;436549;436550;436551;436552	436537			15	
VDSDKEDDITELK	2	Unmodified	1505.7097	0.7096978	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	5									1	2	2		32.559	31.946	2	1.544E-06	28551	160511_QHF_FH_JSI10i_1	99.5	81.188			2.2086	2.1599	55.822	3	3	Median	1.2598	1.0298	NaN	1	1	Median	2.6585	3.0747	NaN	1	1	Median	2.2086	2.1599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67636000	21287000	46349000	26956000	10821000	16135000	14323000	4570900	9752200	26356000	5895100	20461000	0	0	0	53587	1769	50477	324153;324154;324155;324156;324157	436553;436554;436555;436556;436557	436556			5	
VDSEGDFSENDDAAGDFR	0	Unmodified	1944.761	0.76095811	384	O43823	AKAP8	A-kinase anchor protein 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										1	2		45.701	45.275	2	0.00026433	40838	160511_QHF_FH_JSI11i_1	84.506	78.265			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6941100	6941100	0	0	0	0	6941100	6941100	0	0	0	0	0	0	0	53588	384	50478	324158;324159;324160	436558;436559;436560	436558			3	
VDSEVLSAK	1	Unmodified	946.49713	0.49712625	4258	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		24.298	24.136	2	0.01177	20976	160511_QHF_FH_JSI11i_1	48.423	28.142			1.1138	1.1047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1138	1.1047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102630000	51503000	51129000	0	0	0	0	0	0	102630000	51503000	51129000	0	0	0	53589	4258	50479	324161	436561	436561			1	
VDSFHESTEGK	1	Unmodified	1234.5466	0.54659564	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.86	0.35	1	6									1	3	3	11.465	10.997	2;3	0.00069372	8413	160511_QHF_FH_JSI11i_2	82.261	54.052			1.2346	1.2788	25.003	7	4	Median	NaN	NaN	NaN	0	0	Median	1.6137	1.9981	NaN	1	0	Median	1.2092	1.2109	20.578	3	2	Plateau	1.1433	1.2788	23.065	3	2	Median	331960000	150530000	181440000	0	0	0	61293000	27143000	34150000	138510000	59038000	79477000	132150000	64345000	67809000	53590	3803	50480	324162;324163;324164;324165;324166;324167;324168	436562;436563;436564;436565;436566	436566			5	
VDSHSKILYAR	1	Acetyl (K)	1329.7041	0.70409934	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.632	32.06	3	0.00052794	17634	160513_QHF_FH_JSI11Kac_6	73.435	63.902			0.20862	0.20189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20862	0.20189	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8724200	7354500	1369700	0	0	0	0	0	0	8724200	7354500	1369700	0	0	0	53591	2349	50481	324169	436567	436567	2432		1	
VDSKSLFHYR	1	Acetyl (K)	1292.6513	0.65133548	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	56.243	46.392	3	0.035257	24222	160513_QHF_FH_JSI12Kac_6	36.952	26.998			0.35255	0.37822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35255	0.37822	NaN	1	1	Median	4975300	3913800	1061500	0	0	0	0	0	0	0	0	0	4975300	3913800	1061500	53592	1372	50482	324170	436568	436568			1	
VDSLLENLEK	1	Unmodified	1158.6132	0.61321864	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	63.802	63.029	2	3.8754E-08	57014	160511_QHF_FH_JSI10i_1	125.48	56.056			1.0649	1.1574	30.329	9	3	Median	1.701	1.4032	38.85	2	1	Median	1.001	1.231	32.711	3	2	Median	1.0905	1.0915	8.289	2	0	Median	0.81983	0.8843	1.0879	2	0	Median	5816300000	2694700000	3121600000	1200300000	472390000	727860000	1822300000	789370000	1033000000	1575600000	714030000	861590000	1218100000	718920000	499170000	53593	882	50483	324171;324172;324173;324174;324175;324176;324177;324178;324179	436569;436570;436571;436572;436573;436574;436575;436576;436577;436578;436579;436580;436581;436582;436583;436584;436585;436586;436587;436588;436589;436590;436591;436592	436581			24	
VDSLNDEINFLK	1	Unmodified	1405.7089	0.70890994	60	CON__P19013;P19013	KRT4	Keratin, type II cytoskeletal 4	yes	no	0	0	0	0			By MS/MS		2	0		1										1		63.72	63.186	3	0.063553	54890	160511_QHF_FH_JSI11i_2	10.052	0		+	1.0457	1.0983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0457	1.0983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37649000	20124000	17524000	0	0	0	0	0	0	37649000	20124000	17524000	0	0	0	53594	60	50484	324180	436593	436593			1	
VDSPTVTTTLK	1	Unmodified	1160.6289	0.62886871	2258	Q07866	KLC1	Kinesin light chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.271	36.672	2	0.0045329	33291	160511_QHF_FH_JSI12i_1	64.374	44.54			1.3415	1.3629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3415	1.3629	NaN	1	1	Median	132410000	52541000	79868000	0	0	0	0	0	0	0	0	0	132410000	52541000	79868000	53595	2258	50485	324181	436594	436594			1	
VDSQASITQDSDSIK	1	Unmodified	1592.753	0.7529596	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	32.128	31.551	2	1.1834E-07	28047	160511_QHF_FH_JSI10i_1	95.417	80.727			1.2928	1.2461	16.244	4	4	Median	1.51	1.2822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1038	1.0738	17.011	2	2	Median	1.3238	1.3879	NaN	1	1	Median	135660000	50521000	85142000	29242000	13193000	16049000	0	0	0	65424000	20496000	44929000	40996000	16832000	24165000	53596	3063	50486	324182;324183;324184;324185;324186	436595;436596;436597;436598;436599	436598			5	
VDSQYPPVQR	0	Unmodified	1187.5935	0.59348625	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	22.659	21.993	2	0.0050363	19065	160511_QHF_FH_JSI10i_1	64.04	28.595			0.43308	0.49759	2.7733	3	3	Plateau	0.59598	0.49759	NaN	1	1	Median	0.43308	0.50246	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46011	0.47693	NaN	1	1	Median	289580000	189290000	100290000	96607000	58007000	38601000	103430000	72249000	31182000	0	0	0	89540000	59033000	30507000	53597	1684	50487	324187;324188;324189	436600;436601;436602	436601			3	
VDSTTCLFPVEEK	1	Unmodified	1523.7178	0.71776007	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.267	60.617	2	1.5011E-09	55147	160511_QHF_FH_JSI12i_1	110.08	81.35			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53598	2242	50488	324190	436603	436603			1	
VDSVPDVSPAPSPAGIPHGSQTIGNHFQR	0	Unmodified	2966.4635	0.46348172	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			59.895	58.363	4	0.011175	48832	160511_QHF_FH_JSI10i_3	25.726	19.003			1.0275	1.0011	5.4368	2	0	Median	1.2658	1.0403	NaN	1	0	Median	0.83413	0.96332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87768000	46202000	41567000	21416000	11355000	10061000	66352000	34847000	31506000	0	0	0	0	0	0	53599	3021	50489	324191;324192	436604;436605	436604			2	
VDTEDIEK	1	Unmodified	947.44476	0.44475633	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.4	4				1					1	1	1	2	21.048	19.208	2	0.0042007	16775	160511_QHF_FH_JSI12i_1	69.423	34.616			0.95369	0.94392	10.298	5	0	Median	1.2396	1.0357	NaN	1	0	Median	0.74799	0.88803	NaN	1	0	Median	0.95369	0.94392	NaN	1	0	Median	0.92002	0.98015	17.188	2	0	Median	1567200000	790320000	776870000	334560000	129960000	204590000	460240000	274820000	185420000	440340000	211380000	228960000	332050000	174150000	157900000	53600	5233	50490	324193;324194;324195;324196;324197	436606;436607;436608;436609;436610;436611;436612;436613	436608			8	
VDTHIHASSCMNQK	1	Unmodified	1626.7243	0.72425921	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.924	15.976	3	2.1566E-06	12703	160511_QHF_FH_JSI12i_3	86.467	67.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53601	2168	50491	324198	436614	436614			1	
VDTILEFSQNMNTK	1	Unmodified	1638.7923	0.792322	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	1	3	71.498	70.773	2;3	9.0458E-12	64105	160511_QHF_FH_JSI10i_1	199.43	179.67			1.2493	1.1295	18.49	8	3	Median	1.5048	1.2958	14.866	2	1	Median	0.88313	1.0403	0.41097	2	1	Median	1.1288	1.0937	NaN	1	0	Median	1.2074	1.2805	22.962	3	1	Plateau	541210000	259400000	281820000	76504000	35898000	40607000	204990000	105100000	99891000	78914000	38637000	40276000	180800000	79761000	101040000	53602	231	50492	324199;324200;324201;324202;324203;324204;324205;324206	436615;436616;436617;436618;436619;436620;436621;436622;436623;436624	436622			9	
VDTLPYVPEPIK	1	Unmodified	1369.7493	0.74931819	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	72.751	72.237	2	8.2122E-05	64263	160511_QHF_FH_JSI9i_1	93.096	71.632			0.91094	0.86903	11.188	4	1	Median	1.0704	0.8611	NaN	1	0	Median	0.74111	0.87704	NaN	1	0	Median	1.116	1.0661	NaN	1	1	Median	0.7752	0.83113	NaN	1	0	Median	193370000	88411000	104960000	60284000	26438000	33847000	45737000	21516000	24221000	47287000	19545000	27741000	40064000	20912000	19152000	53603	3819	50493	324207;324208;324209;324210;324211	436625;436626;436627;436628;436629;436630;436631;436632	436631			8	
VDTMIVQAISLLDDLDK	1	Unmodified	1887.9863	0.98633036	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		6								1	1	3	1	103.25	103.15	2;3	5.2961E-11	90932	160511_QHF_FH_JSI11i_2	173.68	151.8			0.90582	0.81391	13.725	5	1	Median	0.93549	0.80818	NaN	1	0	Median	0.66568	0.81391	NaN	1	0	Median	0.89045	0.90652	21.743	2	1	Median	0.90582	0.98623	NaN	1	0	Median	176960000	91866000	85097000	19600000	10920000	8680400	44655000	26385000	18269000	87457000	43704000	43754000	25251000	10857000	14394000	53604	5544	50494	324212;324213;324214;324215;324216;324217	436633;436634;436635;436636	436635			4	
VDTNAPDLSLEGPEGK	1	Unmodified	1640.7893	0.78934511	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.97	7					1				2	2	1	3	55.225	53.46	2;3	3.8118E-10	48430	160511_QHF_FH_JSI12i_1	168.61	155.65			0.92995	0.93402	23.217	8	4	Median	0.9811	0.7947	31.834	2	1	Median	0.90121	1.0418	35.053	2	1	Median	0.88045	0.85431	NaN	1	1	Median	0.98222	1.0642	14.569	3	1	Median	1706000000	885450000	820520000	481440000	247560000	233880000	433290000	229940000	203350000	374250000	197360000	176890000	416990000	210590000	206400000	53605	2286	50495	324218;324219;324220;324221;324222;324223;324224;324225	436637;436638;436639;436640;436641;436642;436643;436644;436645;436646	436638			10	
VDTTLSDSYNYSGTENLK	1	Unmodified	2005.9116	0.91164509	3261	Q7Z3T8	ZFYVE16	Zinc finger FYVE domain-containing protein 16	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				54.754	53.576	2	0.00051056	47636	160511_QHF_FH_JSI9i_1	64.104	41.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53606	3261	50496	324226	436647	436647			1	
VDTVNHLADELINSGHSDAATIAEWK	1	Unmodified	2805.357	0.35695096	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.124	94.119	4	0.0012314	81596	160511_QHF_FH_JSI12i_3	36.756	33.769			1.2405	1.2029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2405	1.2029	NaN	1	0	Median	44152000	21690000	22462000	0	0	0	0	0	0	0	0	0	44152000	21690000	22462000	53607	2162	50497	324227	436648	436648			1	
VDVADQAQDK	1	Unmodified	1087.5146	0.51456723	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	15.531	14.952	2	7.3245E-05	12132	160511_QHF_FH_JSI9i_1	101.65	67.393			1.253	1.239	34.499	5	0	Median	1.036	0.84496	54.126	2	0	Median	0.96181	1.1395	NaN	1	0	Median	1.2846	1.2518	NaN	1	0	Median	1.253	1.3178	NaN	1	0	Median	797830000	361210000	436620000	241470000	105360000	136110000	191320000	99630000	91692000	207490000	77934000	129560000	157550000	78291000	79257000	53608	1237	50498	324228;324229;324230;324231;324232	436649;436650;436651;436652	436652			3	
VDVASVIVTK	1	Unmodified	1029.607	0.60701105	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	6.02	3	1					2			1	2	2	1	60.819	56.786	2	0.011055	31407	160513_QHF_FH_JSI11Kac_4	54.416	29.494			0.96963	0.98263	7.3146	6	0	Median	1.0987	0.94778	NaN	1	0	Median	0.82337	0.98263	3.0469	2	0	Median	1.0225	1.0021	12.617	2	0	Median	1.0074	1.0833	NaN	1	0	Median	213430000	113390000	100040000	19730000	10536000	9194600	76947000	44143000	32805000	73342000	36017000	37325000	43415000	22698000	20716000	53609	1929	50499	324233;324234;324235;324236;324237;324238	436653;436654;436655	436655			3	
VDVAVLK	1	Unmodified	742.45889	0.45889025	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	40.671	39.995	2	0.010534	36390	160511_QHF_FH_JSI12i_1	74.415	28.045			0.94252	0.89691	9.318	6	0	Median	1.1098	0.92271	4.2756	2	0	Median	0.75792	0.89859	NaN	1	0	Median	0.85195	0.862	1.5157	2	0	Median	1.0375	1.1017	NaN	1	0	Median	535550000	286620000	248930000	120660000	56507000	64150000	111640000	68013000	43627000	211960000	113640000	98325000	91292000	48468000	42824000	53610	2217	50500	324239;324240;324241;324242;324243;324244	436656;436657;436658;436659	436657			4	
VDVAVNCAGIAVASK	1	Unmodified	1472.7657	0.76571331	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	57.071	56.544	2	2.0898E-16	51185	160511_QHF_FH_JSI11i_1	118.24	103.82			0.95148	1.0491	21.726	2	2	Median	NaN	NaN	NaN	0	0	Median	0.77468	0.8997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1686	1.2233	NaN	1	1	Median	270790000	143230000	127550000	0	0	0	149910000	79361000	70549000	0	0	0	120870000	63871000	57003000	53611	4304	50501	324245;324246;324247;324248	436660;436661;436662;436663	436660			4	
VDVDEYDENK	1	Unmodified	1224.5146	0.51462681	296	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	27.369	26.7	2	1.3908E-07	23913	160511_QHF_FH_JSI12i_1	120.31	109.15			1.1779	0.99235	7.4418	3	1	Median	1.2125	0.992	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1779	1.1287	NaN	1	1	Median	0.98024	0.99235	NaN	1	0	Median	326120000	146910000	179210000	105210000	47241000	57968000	0	0	0	105760000	43324000	62435000	115160000	56346000	58809000	53612	296	50502	324249;324250;324251	436664;436665;436666;436667	436666			4	
VDVDIPDVNIEGPDAK	1	Unmodified	1694.8363	0.8362953	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										3	2	2	77.377	77.059	2;3	1.9634E-07	69896	160511_QHF_FH_JSI10i_1	131.69	24.603			1.0211	1.0286	7.6893	7	3	Median	NaN	NaN	NaN	0	0	Median	0.74819	0.90253	3.7483	3	2	Plateau	1.0742	1.0474	2.5688	2	1	Median	1.0279	1.0773	0.66693	2	0	Median	404360000	221250000	183110000	0	0	0	198370000	122310000	76058000	116130000	56703000	59423000	89858000	42234000	47625000	53613	2286	50503	324252;324253;324254;324255;324256;324257;324258	436668;436669;436670;436671;436672	436671			5	
VDVDVPDVNIEGPDAK	1	Unmodified	1680.8206	0.82064524	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	70.501	70.018	2;3	4.1823E-22	63877	160511_QHF_FH_JSI11i_1	180.18	145.8			0.94549	0.91598	13.126	7	1	Median	0.95623	0.77036	NaN	1	0	Median	0.79853	0.9276	12.212	2	0	Median	0.93436	0.90345	1.9466	2	1	Median	1.0478	1.0882	4.6061	2	0	Median	1609200000	858860000	750360000	176710000	92508000	84204000	518930000	256190000	262740000	495480000	282450000	213030000	418090000	227710000	190380000	53614	2286	50504	324259;324260;324261;324262;324263;324264;324265;324266;324267	436673;436674;436675;436676;436677;436678;436679;436680;436681;436682;436683;436684;436685;436686;436687;436688;436689;436690;436691	436674			19	
VDVEALENSAGATYIR	0	Unmodified	1706.8475	0.84752869	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	2	2								2		2		71.619	71.271	2	1.653E-16	64819	160511_QHF_FH_JSI11i_1	116.51	84.448			0.77988	0.75527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77988	0.75527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35126000	18046000	17081000	0	0	0	0	0	0	35126000	18046000	17081000	0	0	0	53615	602	50505	324268;324269;324270;324271	436692;436693;436694;436695;436696	436694			5	
VDVEALENSAGATYIRK	1	Unmodified	1834.9425	0.94249171	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	64.012	63.6	2;3	9.9961E-07	56371	160511_QHF_FH_JSI10i_2	112.16	95.493			0.88728	0.85094	51.819	4	1	Median	1.0786	0.92472	NaN	1	1	Median	0.2517	0.31174	NaN	1	0	Median	0.95969	0.88075	NaN	1	0	Median	0.82033	0.82214	NaN	1	0	Median	715220000	438990000	276230000	85876000	42688000	43188000	79620000	69050000	10570000	356020000	213170000	142850000	193700000	114090000	79618000	53616	602	50506	324272;324273;324274;324275;324276	436697;436698;436699;436700;436701;436702;436703;436704	436701			8	
VDVECPDVNIEGPEGK	1	Unmodified	1755.7985	0.79852959	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	57.273	56.734	2	4.2676E-07	51424	160511_QHF_FH_JSI11i_1	128.31	115.33			0.62171	0.61806	6.399	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67873	0.64667	NaN	1	1	Median	0.56947	0.59072	NaN	1	1	Median	73470000	43919000	29550000	0	0	0	0	0	0	38256000	22051000	16205000	35214000	21868000	13345000	53617	2286	50507	324277;324278	436705;436706	436705			2	
VDVEEEFFALRK	1	Unmodified	1480.7562	0.75619449	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	75.058	74.774	3	0.05324	64987	160511_QHF_FH_JSI12i_3	24.72	16.122			1.4796	1.4825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4796	1.4825	NaN	1	1	Median	62136000	25763000	36373000	0	0	0	0	0	0	0	0	0	62136000	25763000	36373000	53618	1576	50508	324279	436707	436707			1	
VDVEGPDVNIEGPEGK	1	Unmodified	1652.7893	0.78934511	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	56.276	55.56	2;3	6.7793E-40	50431	160511_QHF_FH_JSI12i_1	198.74	157.04			1.0911	1.0951	15.473	8	4	Median	1.2073	0.99274	21.799	3	2	Median	0.84825	1.0026	13.053	2	1	Median	1.2244	1.1911	10.74	2	1	Median	1.0405	1.0908	NaN	1	0	Median	1230700000	586300000	644360000	405150000	184370000	220780000	259580000	155830000	103750000	333720000	131500000	202220000	232220000	114600000	117620000	53619	2286	50509	324280;324281;324282;324283;324284;324285;324286;324287	436708;436709;436710;436711;436712;436713;436714;436715;436716	436709			8	
VDVEQKMSIR	1	Unmodified	1203.6282	0.6281572	4299	Q99653	CHP1	Calcineurin B homologous protein 1	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		69.301	59.788	3	0.042427	32367	160513_QHF_FH_JSI11Kac_6	41.117	15			14.284	13.58	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14.284	13.58	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49054000	1982100	47072000	0	0	0	0	0	0	49054000	1982100	47072000	0	0	0	53620	4299	50510	324288	436717	436717			1	
VDVEVPDVSLEGPEGK	1	Unmodified	1667.8254	0.82539626	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.661	7		1							3	1	2	2	73.917	73.373	2;3	3.2262E-07	65398	160511_QHF_FH_JSI9i_1	151.78	120.3			1.1229	1.107	10.227	7	2	Median	1.1912	0.9736	7.4679	2	2	Median	1.0535	1.2576	NaN	1	0	Median	1.0786	1.0627	5.7865	2	0	Median	1.1073	1.151	2.6949	2	0	Median	1741500000	820620000	920890000	331820000	145100000	186720000	185040000	105840000	79198000	574470000	281070000	293400000	650170000	288610000	361570000	53621	2286	50511	324289;324290;324291;324292;324293;324294;324295;324296	436718;436719;436720;436721;436722;436723;436724;436725;436726;436727;436728;436729;436730	436729			13	
VDVFREDLCTK	1	Unmodified	1380.6708	0.6707503	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	46.788	46.627	2;3	0.0023443	39759	160511_QHF_FH_JSI12i_3	85.958	73.745			1.2512	1.3192	20.103	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99118	0.94782	NaN	1	0	Median	1.2971	1.341	2.3229	2	0	Median	553280000	235430000	317860000	0	0	0	0	0	0	167180000	82990000	84187000	386110000	152440000	233670000	53622	2244	50512	324297;324298;324299	436731;436732	436732			2	
VDVGGSEPASLSYLSFEGATK	1	Unmodified	2113.0215	0.021529888	4928	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	82.99	82.57	2;3	7.2564E-47	75257	160511_QHF_FH_JSI12i_1	210.9	191.33			0.84026	0.82294	13.131	6	0	Median	0.90798	0.72962	NaN	1	0	Median	0.69913	0.78992	16.756	2	0	Median	0.84101	0.80395	NaN	1	0	Median	0.90788	0.91925	12.35	2	0	Median	165130000	87949000	77176000	24677000	13174000	11503000	57087000	31644000	25443000	25527000	13693000	11834000	57835000	29438000	28396000	53623	4928	50513	324300;324301;324302;324303;324304;324305	436733;436734;436735;436736;436737;436738;436739;436740;436741;436742;436743;436744	436737			12	
VDVGKDQEFTVK	2	Unmodified	1363.6983	0.69834526	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS			By MS/MS	2	0		3								1			2	37.193	35.944	2;3	0.00092869	30608	160511_QHF_FH_JSI12i_2	68.809	61.085			1.1205	1.2875	20.881	3	1	Median	1.0471	0.91608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.181	1.3131	2.7855	2	1	Median	194790000	90385000	104400000	30367000	11341000	19026000	0	0	0	0	0	0	164420000	79044000	85375000	53624	1192	50514	324306;324307;324308	436745;436746	436745			2	
VDVGKDQEFTVK	2	Acetyl (K)	1405.7089	0.70890994	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			60.619	51.176	2	0.040478	26334	160513_QHF_FH_JSI10Kac_3	44.309	17.195			0.83017	0.95912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83017	0.95912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1601400	921060	680390	0	0	0	1601400	921060	680390	0	0	0	0	0	0	53625	1192	50514	324309	436747	436747	1048		1	
VDVGQQPLR	0	Unmodified	1010.5509	0.55089316	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		27.561	27.302	2	0.012935	24165	160511_QHF_FH_JSI11i_1	47.082	30.879			1.2541	1.3414	12.733	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0533	1.2259	NaN	1	0	Median	1.4932	1.4678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	256090000	153700000	102390000	0	0	0	137570000	80287000	57281000	118530000	73417000	45108000	0	0	0	53626	6	50515	324310;324311	436748;436749	436748			2	
VDVIAGSSK	1	Unmodified	874.476	0.47599688	457	O60885	BRD4	Bromodomain-containing protein 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		19.603	19.48	2	0.0020179	16667	160511_QHF_FH_JSI11i_1	67.897	35.542			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53627	457	50516	324312	436750	436750			1	
VDVIISEWMGYFLLFESMLDSVLYAK	1	Unmodified	3067.5327	0.53265541	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	0		By MS/MS			11	0				1							1			106.87	97.758	3	9.5082E-23	37155	160513_QHF_FH_JSI10Kac_1	124.14	117.92			0.8917	1.003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8917	1.003	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3487700	1836000	1651700	0	0	0	3487700	1836000	1651700	0	0	0	0	0	0	53628	438	50517	324313	436751;436752;436753	436751			3	
VDVINFAQNK	1	Unmodified	1146.6033	0.60332266	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		64.605	53.541	2	0.057677	30071	160513_QHF_FH_JSI11Kac_4	41.029	21.242			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53629	235	50518	324314	436754	436754			1	
VDVIQEPGLSGR	0	Unmodified	1268.6725	0.67246486	4658	Q9H1E5	TMX4	Thioredoxin-related transmembrane protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	4										1		3	48.373	47.83	2	0.0019559	43515	160511_QHF_FH_JSI12i_1	60.598	40.607			0.59965	0.65103	3.513	2	2	Median	NaN	NaN	NaN	0	0	Median	0.5503	0.63505	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65342	0.6674	NaN	1	1	Median	170430000	101890000	68544000	0	0	0	84727000	51091000	33636000	0	0	0	85704000	50796000	34908000	53630	4658	50519	324315;324316;324317;324318	436755;436756;436757;436758	436757			4	
VDVNAPDVQAPDWHLK	1	Unmodified	1802.8951	0.89514758	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								1	2	2	4	67.695	66.976	2;3	5.5687E-17	57588	160511_QHF_FH_JSI12i_2	125.61	110.07			1.1957	1.2515	26.8	7	4	Median	1.1034	0.94235	NaN	1	1	Median	1.2599	1.5346	34.595	2	1	Median	1.3681	1.3712	38.253	2	1	Median	1.216	1.2955	4.8944	2	1	Median	1606800000	743510000	863290000	31817000	14693000	17124000	456860000	236270000	220580000	800280000	323120000	477160000	317830000	169420000	148410000	53631	2286	50520	324319;324320;324321;324322;324323;324324;324325;324326;324327	436759;436760;436761;436762;436763;436764;436765;436766;436767;436768;436769;436770	436762			12	
VDVRPATR	0	Unmodified	912.51411	0.51411372	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.955	10.243	3	0.059487	7729	160511_QHF_FH_JSI9i_3	21.464	6.3128			1.0205	0.8155	NaN	1	0	Median	1.0205	0.8155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	243240000	112770000	130470000	243240000	112770000	130470000	0	0	0	0	0	0	0	0	0	53632	3553	50521	324328	436771	436771			1	
VDVSAPDVEAHGPEWNLK	1	Unmodified	1961.9483	0.94830537	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.739	3	5	3							2	3	3	3	65.378	64.642	2;3	3.7635E-09	56485	160511_QHF_FH_JSI11i_2	135.27	124.93			0.93355	0.95574	17.549	10	2	Median	0.96357	0.80815	36.637	2	1	Median	0.7802	0.9454	7.7059	2	0	Median	0.99839	0.98581	9.1794	3	1	Plateau	1.0056	1.0345	15.619	3	0	Median	1680700000	839950000	840750000	194900000	88519000	106380000	446980000	250600000	196380000	528360000	249560000	278800000	510460000	251270000	259190000	53633	2286	50522	324329;324330;324331;324332;324333;324334;324335;324336;324337;324338;324339	436772;436773;436774;436775;436776;436777;436778;436779;436780;436781;436782;436783;436784;436785;436786;436787;436788;436789	436786			18	
VDVSAPDVEMQGPDWNLK	1	Unmodified	1998.9357	0.93569177	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	1	2	80.463	80.122	2;3	6.4074E-41	72699	160511_QHF_FH_JSI10i_1	202.25	184.62			0.5021	0.51276	38.616	5	0	Median	NaN	NaN	NaN	0	0	Median	0.60673	0.71653	55.651	2	0	Median	0.48683	0.4762	NaN	1	0	Median	0.66162	0.68387	40.726	2	0	Median	504420000	309930000	194490000	0	0	0	151510000	94680000	56828000	100140000	64398000	35740000	252780000	150850000	101920000	53634	2286	50523	324340;324341;324342;324343;324344	436790;436791;436792;436793;436794;436795;436796	436795			6	
VDVSAPDVEMQGPDWNLK	1	Oxidation (M)	2014.9306	0.93060639	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	70.436	69.842	2	0.0065243	63577	160511_QHF_FH_JSI12i_1	63.091	49.955			1.4187	1.4341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4187	1.4341	NaN	1	1	Median	9462500	2773500	6689100	0	0	0	0	0	0	0	0	0	9462500	2773500	6689100	53635	2286	50523	324345	436797;436798	436797		1896	2	
VDVTEQPGLSGR	0	Unmodified	1256.6361	0.63607935	4698	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.5	5.81	5					3				1	2	3	2	37.083	33.389	2	0.00024876	29402	160511_QHF_FH_JSI9i_1	92.611	80.763			0.95134	0.96557	10.834	8	5	Median	1.17	0.95231	NaN	1	1	Median	0.86723	1.0158	8.519	2	1	Median	0.97129	0.95454	14.192	3	2	Median	1.0023	1.078	14.233	2	1	Median	1715200000	898920000	816260000	304550000	151270000	153280000	312980000	188170000	124810000	782220000	387900000	394320000	315430000	171580000	143850000	53636	4698	50524	324346;324347;324348;324349;324350;324351;324352;324353	436799;436800;436801;436802;436803;436804;436805;436806	436804			8	
VDVYTTHSPAGTSVQNMLHWSQAVK	1	Unmodified	2755.3388	0.33879848	1478	P38571	LIPA	Lysosomal acid lipase/cholesteryl ester hydrolase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									3	1	76.359	76.267	3;4	1.9307E-09	68038	160511_QHF_FH_JSI11i_3	80.102	77.105			1.0624	0.98005	18.739	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2277	1.1508	22.708	2	1	Median	0.95428	0.97345	NaN	1	0	Median	167770000	73449000	94321000	0	0	0	0	0	0	116970000	52896000	64074000	50800000	20553000	30247000	53637	1478	50525	324354;324355;324356;324357	436807;436808;436809;436810;436811	436807			5	
VDWLTEK	1	Unmodified	889.45453	0.45453316	1917;1481;2519	P38919;P60842;Q14240	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	45.966	45.14	2	0.019157	40720	160511_QHF_FH_JSI11i_1	58.782	43.343			0.9231	0.91972	10.78	8	0	Median	1.0148	0.85473	1.6371	2	0	Median	0.88096	1.0637	5.481	2	0	Median	1.0034	0.995	9.6663	2	0	Median	0.80392	0.87443	5.6809	2	0	Median	4033700000	2090500000	1943200000	656000000	317880000	338120000	1070000000	532360000	537610000	1317500000	663100000	654360000	990280000	577130000	413150000	53638	1481;1917;2519	50526	324358;324359;324360;324361;324362;324363;324364;324365	436812;436813;436814;436815;436816;436817;436818;436819;436820;436821;436822;436823	436813			12	
VDWLTEKMHAR	1	Acetyl (K)	1426.7027	0.70271913	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	1	0	0	1		By matching	By MS/MS	By MS/MS	16	0									3		1	1	1	71.285	62.403	3	3.5856E-12	33852	160513_QHF_FH_JSI11Kac_6	144.17	124.33			0.43291	0.46674	90.595	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3531	1.5437	NaN	1	0	Median	0.27712	0.26119	NaN	1	0	Median	0.43291	0.46674	NaN	1	0	Median	353810000	239410000	114400000	0	0	0	113150000	50895000	62251000	215610000	170890000	44721000	25050000	17622000	7427400	53639	1917;2519	50527	324366;324367;324368	436824;436825	436824	1921		2	
VDYFIASK	1	Unmodified	941.48583	0.48583328	4269	Q99442	SEC62	Translocation protein SEC62	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		44.441	44.048	2	0.016562	39825	160511_QHF_FH_JSI11i_1	55.37	36.639			1.133	1.0978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.133	1.0978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97616000	41617000	55999000	0	0	0	0	0	0	97616000	41617000	55999000	0	0	0	53640	4269	50528	324369	436826	436826			1	
VDYIMQLPVPMDAALNK	1	Unmodified	1916.974	0.97399153	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	8									2	3	2	1	101.33	101.23	2;3	1.3615E-80	91922	160511_QHF_FH_JSI11i_1	239.87	216.02			0.86184	0.8456	18.56	7	1	Median	1.4137	1.1627	9.9764	2	0	Median	0.69802	0.81563	4.1354	2	1	Median	0.83313	0.80136	7.5984	2	0	Median	0.9794	1.0315	NaN	1	0	Median	794510000	437910000	356600000	135760000	58317000	77445000	315150000	171490000	143660000	203380000	117990000	85391000	140220000	90112000	50110000	53641	1573	50529	324370;324371;324372;324373;324374;324375;324376;324377	436827;436828;436829;436830;436831;436832	436827			6	
VDYLSSLGK	1	Unmodified	980.51786	0.51786169	2523	Q14254	FLOT2	Flotillin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.325	54.667	2	0.0012609	49643	160511_QHF_FH_JSI12i_1	69.825	52.439			0.74355	0.71406	11.015	4	0	Median	0.73087	0.60076	NaN	1	0	Median	0.60885	0.72481	NaN	1	0	Median	0.75645	0.70346	NaN	1	0	Median	0.76186	0.7803	NaN	1	0	Median	242080000	133740000	108340000	43433000	21004000	22429000	60263000	38378000	21886000	69224000	40666000	28558000	69155000	33690000	35465000	53642	2523	50530	324378;324379;324380;324381	436833;436834;436835	436834			2	
VDYSGGFEPFSVLR	0	Unmodified	1571.762	0.76200815	1695	P49959	MRE11A	Double-strand break repair protein MRE11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	1.8	0.4	1	4								1	1	2	1	90.18	89.65	2	0.0055166	79721	160511_QHF_FH_JSI10i_2	53.569	43.045			0.89443	0.92427	8.8929	5	0	Median	1.133	0.94889	NaN	1	0	Median	0.89443	1.0768	NaN	1	0	Median	0.92095	0.91812	0.94476	2	0	Median	0.77818	0.84286	NaN	1	0	Median	118550000	64972000	53575000	25148000	11677000	13471000	25824000	15511000	10313000	42801000	22506000	20295000	24774000	15278000	9496600	53643	1695	50531	324382;324383;324384;324385;324386	436836;436837	436837			2	
VEAALDSRK	1	Unmodified	987.53491	0.53490874	4550	Q9BYN8	MRPS26	28S ribosomal protein S26, mitochondrial	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		10.114	9.9134	2	0.012644	7416	160511_QHF_FH_JSI11i_2	47.657	2.576			0.99384	0.98773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99384	0.98773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29033000	13255000	15778000	0	0	0	0	0	0	29033000	13255000	15778000	0	0	0	53644	4550	50532	324387	436838	436838			1	
VEAAVGEDLFQEAHEVILK	1	Unmodified	2096.079	0.078985188	1362	P30711	GSTT1	Glutathione S-transferase theta-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.434	95.1	3	0.022363	83503	160511_QHF_FH_JSI11i_2	29.603	19.264			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53645	1362	50533	324388	436839	436839			1	
VEADGSFPSMQGDLK	1	Unmodified	1579.7188	0.7188227	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		56.125	55.536	2	0.00013856	49260	160511_QHF_FH_JSI9i_1	96.113	84.581			0.85623	0.83135	14.007	4	3	Median	1.0468	0.84024	NaN	1	0	Median	0.67029	0.77336	8.7224	2	2	Median	1.0478	1.0203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	141990000	76970000	65023000	39656000	21873000	17784000	59941000	38934000	21006000	42397000	16164000	26233000	0	0	0	53646	3405	50534	324389;324390;324391;324392	436840;436841;436842;436843	436843			4	
VEADMSLPSMQGDLK	1	Unmodified	1619.7535	0.75349365	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	67.544	66.959	2	0.00012078	60872	160511_QHF_FH_JSI11i_1	98.353	81.328			0.8276	0.83642	4.2711	4	0	Median	0.92853	0.77106	NaN	1	0	Median	0.73325	0.83624	NaN	1	0	Median	0.88104	0.84521	NaN	1	0	Median	0.7774	0.8366	NaN	1	0	Median	126820000	66211000	60613000	23816000	10822000	12994000	35168000	18857000	16311000	31255000	16599000	14656000	36585000	19932000	16653000	53647	3405	50535	324393;324394;324395;324396	436844;436845;436846;436847;436848	436844			5	
VEADRPGK	1	Acetyl (Protein N-term)	912.46649	0.46649483	1474	P38159;Q96E39;O75526	RBMX;RBMXL1;RBMXL2	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2	yes	no	0	1	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	13.27	10.604	2	0.00012492	9177	160511_QHF_FH_JSI10i_1	79.116	61.081			0.88205	0.94204	11.259	6	0	Median	1.2549	0.99852	NaN	1	0	Median	0.85078	1.0066	NaN	1	0	Median	1.0046	0.98151	14.04	2	0	Median	0.77033	0.83668	6.7359	2	0	Median	3851100000	2063300000	1787900000	970070000	436690000	533380000	891220000	504410000	386800000	876540000	438430000	438100000	1113300000	683720000	429580000	53648	1474	50536	324397;324398;324399;324400;324401;324402	436849;436850;436851;436852;436853;436854;436855;436856;436857	436853			9	
VEADVSLPSMQGDLK	1	Unmodified	1587.7814	0.78142296	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	67.145	66.482	2	5.169E-12	60543	160511_QHF_FH_JSI12i_1	113.24	90.598			0.64007	0.63472	59.894	2	2	Median	0.50658	0.41558	NaN	1	1	Median	0.80874	0.96943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251180000	149640000	101540000	123060000	80353000	42704000	128120000	69284000	58835000	0	0	0	0	0	0	53649	3405	50537	324403;324404;324405;324406	436858;436859;436860;436861	436858			4	
VEAELLPQCWEQINHK	1	Unmodified	1992.9727	0.97274598	5201	Q9P260	KIAA1468	LisH domain and HEAT repeat-containing protein KIAA1468	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		74.635	74.635	3	0.053825	66586	160511_QHF_FH_JSI11i_3	25.59	9.8244			2.1125	1.965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1125	1.965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	67854000	17271000	50584000	0	0	0	0	0	0	67854000	17271000	50584000	0	0	0	53650	5201	50538	324407	436862	436862			1	
VEAENTHVDPR	0	Unmodified	1265.6	0.60002819	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.75	0.433	1	3									1	1	2	11.855	11.315	2;3	0.019539	8773	160511_QHF_FH_JSI12i_2	20.124	3.4925			1.1224	1.2483	26.979	4	1	Median	NaN	NaN	NaN	0	0	Median	1.5159	1.8383	NaN	1	0	Median	0.98724	0.9638	NaN	1	0	Median	1.1224	1.2483	7.5833	2	1	Median	190290000	86941000	103350000	0	0	0	42102000	14246000	27855000	43558000	22548000	21010000	104640000	50147000	54488000	53651	5745	50539	324408;324409;324410;324411	436863;436864	436863			2	
VEAFLITMEK	1	Unmodified	1179.6209	0.62094656	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.8	5.63		1						3			1	1	2	77.819	69.637	2	0.0043862	62324	160511_QHF_FH_JSI12i_2	66.056	53.429			0.83508	0.90079	48.116	4	1	Median	NaN	NaN	NaN	0	0	Median	0.64157	0.76429	NaN	1	0	Median	1.087	1.0617	NaN	1	0	Median	0.9041	1.0029	79.31	2	1	Median	172440000	106440000	65999000	0	0	0	8825200	4146200	4679000	11899000	5220300	6679200	151720000	97078000	54641000	53652	1060	50540	324412;324413;324414;324415	436865;436866;436867	436865			2	
VEAFLITMEK	1	Oxidation (M)	1195.6159	0.61586118	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.4							1	4		1	1	1	2	67.678	56.989	2	0.0013274	28646	160513_QHF_FH_JSI10Kac_5	79.148	67.658			0.61645	0.60917	41.444	4	0	Median	0.64016	0.53562	NaN	1	0	Median	0.59361	0.69281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76512	0.82832	62.268	2	0	Median	24364000	14377000	9987300	4178100	2359300	1818800	11296000	6867300	4428700	0	0	0	8890300	5150500	3739800	53653	1060	50540	324416;324417;324418;324419;324420	436868;436869;436870	436870		696	3	
VEAFQTTISK	1	Unmodified	1122.5921	0.59208927	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	5.68	2	4	2			2	3			2	4	4	3	42.576	38.155	2	0.00093461	32700	160511_QHF_FH_JSI11i_2	68.893	44.017			0.88026	0.95236	22.01	13	1	Median	1.5067	1.2574	13.347	2	0	Median	0.79977	0.95282	29.082	4	1	Median	0.89305	0.86865	5.9198	4	0	Median	0.81478	0.86299	17.263	3	0	Plateau	1936000000	1017800000	918290000	216500000	98729000	117770000	193260000	105870000	87394000	848470000	421470000	427000000	677810000	391690000	286130000	53654	5391	50541	324421;324422;324423;324424;324425;324426;324427;324428;324429;324430;324431;324432;324433	436871;436872;436873;436874;436875;436876;436877;436878;436879;436880;436881;436882;436883;436884;436885	436881			15	
VEAIDVEEAK	1	Unmodified	1101.5554	0.55536941	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	36.371	33.73	2	0.0027044	30133	160511_QHF_FH_JSI11i_1	68.557	53.297			0.88322	0.90397	7.9811	4	0	Median	1.1609	0.95276	NaN	1	0	Median	0.66934	0.79066	NaN	1	0	Median	0.92228	0.89885	NaN	1	0	Median	0.84581	0.90912	NaN	1	0	Median	2289200000	1264000000	1025100000	711400000	343740000	367650000	816580000	492870000	323710000	753140000	422870000	330280000	8062900	4555400	3507500	53655	1409	50542	324434;324435;324436;324437	436886;436887;436888	436886			3	
VEAKFINYVK	2	Acetyl (K)	1251.6863	0.68632401	857	P06748	NPM1	Nucleophosmin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	1.16				1	2	3	9	15	4	7	11	7	9	71.982	62.002	2;3	3.3672E-19	31549	160513_QHF_FH_JSI12Kac_5	171.56	121.52			0.89877	0.97895	341.36	30	17	Median	1.0684	0.90058	326.92	6	4	Median	0.77783	0.92931	313.95	10	5	Median	0.92837	0.89798	420.17	6	4	Median	0.91301	1.0013	387.95	8	4	Median	21957000000	10652000000	11305000000	3939200000	1683900000	2255200000	5492200000	3283600000	2208600000	6261700000	2976500000	3285100000	6263500000	2707900000	3555600000	53656	857	50543	324438;324439;324440;324441;324442;324443;324444;324445;324446;324447;324448;324449;324450;324451;324452;324453;324454;324455;324456;324457;324458;324459;324460;324461;324462;324463;324464;324465;324466;324467;324468;324469;324470;324471	436889;436890;436891;436892;436893;436894;436895;436896;436897;436898;436899;436900;436901;436902;436903;436904;436905;436906;436907;436908;436909;436910;436911;436912;436913;436914;436915;436916;436917;436918;436919;436920;436921;436922;436923;436924;436925;436926;436927;436928;436929;436930;436931;436932;436933;436934;436935;436936;436937;436938;436939	436926	543;545		50	
VEAKPEVQSQPPR	1	Unmodified	1463.7732	0.77324153	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.68	2.57	4	10	7				1			4	4	7	7	17.263	16.513	2;3	0.00048318	14344	160511_QHF_FH_JSI12i_1	57.267	37.425			0.8262	0.82371	31.557	22	18	Median	0.90259	0.77036	48.128	4	4	Median	0.84086	1.0108	24.216	4	3	Median	0.79748	0.78515	30.423	7	5	Median	0.84228	0.87788	30.041	7	6	Median	3968800000	2040400000	1928500000	609560000	261480000	348080000	734620000	423930000	310680000	1267800000	615130000	652710000	1356800000	739850000	616980000	53657	5433	50544	324472;324473;324474;324475;324476;324477;324478;324479;324480;324481;324482;324483;324484;324485;324486;324487;324488;324489;324490;324491;324492;324493	436940;436941;436942;436943;436944;436945;436946;436947;436948;436949;436950;436951;436952;436953;436954;436955;436956;436957;436958;436959;436960;436961;436962;436963;436964;436965	436949			26	
VEANSTLLNVHIVFEGEK	1	Unmodified	1998.0422	0.042205751	5296	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	81.679	80.527	3	1.2336E-05	69635	160511_QHF_FH_JSI12i_2	82.482	68.65			0.81017	0.8667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81017	0.8667	NaN	1	0	Median	41553000	23641000	17912000	0	0	0	0	0	0	0	0	0	41553000	23641000	17912000	53658	5296	50545	324494	436966	436966			1	
VEAPEYIPISDDPK	1	Unmodified	1571.7719	0.77190413	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				62.046	60.96	2	0.0012187	54125	160511_QHF_FH_JSI9i_1	78.342	58.038			0.77097	0.62416	NaN	1	1	Median	0.77097	0.62416	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42128000	24308000	17820000	42128000	24308000	17820000	0	0	0	0	0	0	0	0	0	53659	2784	50546	324495	436967	436967			1	
VEAPFIPK	1	Unmodified	899.51165	0.5116541	1121;1215	P22694;P22612;P17612	PRKACB;PRKACG;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	52.185	51.362	2	0.0032965	43966	160511_QHF_FH_JSI12i_2	73.616	62.248			1.0006	0.91995	13.343	8	0	Median	1.0888	0.91062	5.2815	2	0	Median	0.88022	1.049	28.211	2	0	Median	0.95919	0.93026	9.3295	2	0	Median	0.90778	0.96188	10.144	2	0	Median	478300000	249470000	228830000	95254000	48753000	46501000	129800000	63791000	66012000	142170000	73046000	69122000	111080000	63881000	47194000	53660	1215;1121	50547	324496;324497;324498;324499;324500;324501;324502;324503	436968;436969;436970;436971;436972	436970			5	
VEAQHILASAPTDR	0	Unmodified	1506.7791	0.77905519	2859	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.57		5	1					2		1	3	2	2	38.616	35.034	2;3	2.4551E-17	29854	160511_QHF_FH_JSI12i_3	137.59	111.07			0.93847	0.88941	24.679	7	1	Median	1.0622	0.87888	NaN	1	0	Median	0.93847	1.1252	34.435	3	1	Median	0.92882	0.94341	33.113	2	0	Median	0.80474	0.88941	NaN	1	0	Median	267530000	153680000	113850000	26278000	8040800	18238000	180390000	111540000	68848000	40844000	23028000	17817000	20018000	11072000	8945700	53661	2859	50548	324504;324505;324506;324507;324508;324509;324510;324511	436973;436974;436975;436976;436977;436978;436979;436980;436981;436982;436983;436984	436984			12	
VEAQLQELQVK	1	Unmodified	1283.7085	0.70851601	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.16	5	1				1				2	3	1	1	51.677	49.246	2	1.5379E-05	44014	160511_QHF_FH_JSI10i_1	105.52	82.094			0.96822	0.99936	11.192	5	1	Median	1.2577	1.0411	NaN	1	1	Median	0.86734	1.0218	15.304	2	0	Median	1.0264	0.99936	NaN	1	0	Median	0.8219	0.85295	NaN	1	0	Median	2304500000	1207800000	1096800000	530970000	262300000	268670000	526480000	284100000	242380000	725280000	378760000	346530000	521800000	282620000	239180000	53662	1436	50549	324512;324513;324514;324515;324516;324517;324518	436985;436986;436987;436988;436989;436990;436991;436992;436993;436994	436989			10	
VEAQVYILSK	1	Unmodified	1148.6441	0.64412484	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	7.26	4							1	2	2	2	1	2	57.269	53.644	2	7.2894E-06	48824	160511_QHF_FH_JSI12i_1	107.24	78.845			0.81991	0.93251	16.083	6	0	Linear	0.98938	0.80954	NaN	1	0	Median	0.85456	1.0148	23.748	2	0	Median	0.88883	0.86694	NaN	1	0	Median	0.97875	1.0632	8.2302	2	0	Median	1061700000	568000000	493660000	105270000	53704000	51571000	408140000	215790000	192350000	220560000	113770000	106780000	327690000	184740000	142950000	53663	1658	50550	324519;324520;324521;324522;324523;324524;324525	436995;436996;436997;436998;436999;437000;437001	436996			6	
VEAVNMAEGIIHDTETK	1	Unmodified	1855.8986	0.89857798	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	1	3	2	73.042	72.29	2;3	1.6826E-11	63423	160511_QHF_FH_JSI11i_2	113.76	91.224			0.91308	0.90386	36.095	7	5	Median	1.1945	1.0131	16.135	2	2	Median	0.58798	0.72227	NaN	1	0	Median	0.81728	0.82228	15.574	2	2	Median	1.2537	1.366	59.565	2	1	Median	617680000	286480000	331200000	138820000	61850000	76971000	86466000	42484000	43982000	224960000	103950000	121010000	167430000	78195000	89238000	53664	1480	50551	324526;324527;324528;324529;324530;324531;324532;324533	437002;437003;437004;437005;437006;437007;437008;437009;437010	437008			9	
VEAYQWSVSEGR	0	Unmodified	1409.6575	0.65754307	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								3	2	1	1	46.546	45.758	2	3.5592E-05	41217	160511_QHF_FH_JSI10i_1	104.79	90.677			0.90494	0.9841	7.6142	6	2	Median	1.1652	0.98418	4.6731	2	1	Median	0.86222	1.0277	1.4761	2	0	Median	0.91603	0.89272	NaN	1	0	Median	0.84335	0.8653	NaN	1	1	Median	309940000	167870000	142070000	80861000	38032000	42830000	141930000	83209000	58720000	53033000	27722000	25312000	34117000	18911000	15206000	53665	5495	50552	324534;324535;324536;324537;324538;324539;324540	437011;437012;437013;437014;437015;437016;437017;437018;437019;437020;437021	437013			11	
VEDAIAYVEYITSSIHSK	1	Unmodified	2024.0102	0.01023692	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		83.428	74.461	4	0.058415	40638	160513_QHF_FH_JSI9Kac_6	9.2633	0.33152			1.1195	1.0098	14.153	2	0	Median	1.0775	0.9136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1631	1.116	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	207110000	106440000	100670000	160220000	81922000	78298000	0	0	0	46890000	24516000	22374000	0	0	0	53666	2257	50553	324541;324542	437022;437023	437023			2	
VEDALNLK	1	Unmodified	900.49165	0.49164694	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		33.654	32.907	2	0.011039	28778	160511_QHF_FH_JSI9i_1	54.549	6.7008			0.88609	0.78828	43.894	2	0	Median	1.3242	1.0752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59293	0.57794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1467900000	714700000	753240000	634990000	275440000	359550000	0	0	0	832950000	439260000	393690000	0	0	0	53667	1544	50554	324543;324544	437024;437025	437025			2	
VEDALSYLDQVK	1	Unmodified	1378.698	0.6980109	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	73.354	72.851	2	4.2146E-05	66266	160511_QHF_FH_JSI12i_1	101.95	89.718			0.75792	0.73976	9.7405	4	0	Median	0.9468	0.78874	NaN	1	0	Median	0.54002	0.64998	NaN	1	0	Median	0.74809	0.69382	NaN	1	0	Median	0.76788	0.79095	NaN	1	0	Median	300720000	162340000	138380000	85745000	42737000	43008000	81692000	48837000	32856000	68457000	40275000	28182000	64829000	30493000	34336000	53668	4247	50555	324545;324546;324547;324548	437026;437027;437028;437029;437030;437031;437032	437027			7	
VEDAMLMFDK	1	Unmodified	1197.541	0.54098168	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	1	2	1	67.12	66.48	2	0.0014075	60226	160511_QHF_FH_JSI10i_1	66.056	50.905			1.2271	1.1636	12.71	6	0	Median	1.3635	1.1429	5.3037	2	0	Median	0.82027	0.95835	NaN	1	0	Median	1.2894	1.2683	14.965	2	0	Median	1.1771	1.2223	NaN	1	0	Median	598780000	259240000	339540000	141740000	52769000	88976000	147870000	71683000	76190000	198690000	85980000	112710000	110470000	48813000	61660000	53669	4028	50556	324549;324550;324551;324552;324553;324554	437033;437034;437035;437036;437037;437038;437039	437036			7	
VEDLSTCNDLIAK	1	Unmodified	1476.713	0.71300904	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	49.786	49.246	2	0.00018909	44751	160511_QHF_FH_JSI12i_1	105.2	15.938			1.3298	1.3269	29.751	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1198	1.0752	NaN	1	1	Median	1.5792	1.6376	NaN	1	1	Median	87010000	37179000	49830000	0	0	0	0	0	0	51810000	24138000	27672000	35200000	13042000	22158000	53670	1201	50557	324555;324556	437040;437041	437041			2	
VEDLTFTSPFCLQVK	1	Unmodified	1782.8862	0.88622238	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	95.451	95.274	2;3	2.6769E-09	86636	160511_QHF_FH_JSI11i_1	186.72	152.84			0.99819	1.1464	87.534	5	4	Median	NaN	NaN	NaN	0	0	Median	2.0096	2.3649	102.41	2	2	Median	1.6014	1.55	123.38	2	2	Median	0.99819	1.0219	NaN	1	0	Median	352880000	98837000	254040000	0	0	0	201350000	46413000	154930000	124850000	39974000	84880000	26681000	12450000	14231000	53671	4325	50558	324557;324558;324559;324560;324561	437042;437043;437044;437045;437046;437047	437043			6	
VEDMAELTCLNEASVLHNLK	1	Unmodified	2285.1032	0.1031678	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	87.788	87.106	3	6.5353E-19	77321	160511_QHF_FH_JSI10i_2	157.98	143.82			1.0347	1.0726	25.407	6	5	Median	1.291	1.0866	NaN	1	1	Median	0.88238	1.0587	NaN	1	0	Median	0.80871	0.81581	2.7732	2	2	Median	1.2853	1.4294	8.4163	2	2	Median	945150000	501320000	443830000	72772000	34206000	38566000	149480000	94535000	54946000	441030000	245840000	195190000	281870000	126740000	155130000	53672	1436;1437	50559	324562;324563;324564;324565;324566;324567	437048;437049;437050;437051;437052;437053;437054	437054			7	
VEDPTFLNQLQSGVNR	0	Unmodified	1815.9115	0.91152593	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.3	0.458	7	3								2	4	2	2	72.621	72.079	2;3	4.788E-35	65534	160511_QHF_FH_JSI11i_1	235.73	205.33			0.7956	0.76603	38.277	8	7	Median	0.83804	0.69437	8.1439	2	2	Median	0.77017	0.98861	55.581	3	3	Median	0.83827	0.83212	5.9578	2	2	Median	0.6547	0.67171	NaN	1	0	Median	793040000	399470000	393570000	176580000	87245000	89330000	230530000	106120000	124420000	268610000	134520000	134090000	117320000	71590000	45728000	53673	2517	50560	324568;324569;324570;324571;324572;324573;324574;324575;324576;324577	437055;437056;437057;437058;437059;437060;437061;437062;437063;437064	437056			9	
VEDSTMPIRR	0	Unmodified	1202.6078	0.60775611	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		18.829	18.382	3	0.0023205	15257	160511_QHF_FH_JSI11i_3	42.001	25.369			1.2003	1.0781	18.051	2	1	Median	1.1325	0.94888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2722	1.2248	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136460000	60813000	75649000	74396000	33371000	41026000	0	0	0	62065000	27442000	34623000	0	0	0	53674	2927	50561	324578;324579	437065;437066;437067	437065			3	
VEDVSAVEIVGGATR	0	Unmodified	1500.7784	0.77838649	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5	5.66	4					2				2	4			62.657	59	2;3	0.00041312	52318	160511_QHF_FH_JSI9i_1	92.295	74.431			0.87973	1.0347	18.748	6	1	Median	1.4611	1.201	4.2261	2	0	Median	0.91136	1.0717	15.479	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	724440000	327320000	397120000	370900000	153030000	217860000	353550000	174290000	179260000	0	0	0	0	0	0	53675	3852	50562	324580;324581;324582;324583;324584;324585	437068;437069;437070;437071;437072;437073;437074	437070			7	
VEDVVVSDECR	0	Unmodified	1305.5871	0.58708025	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	27.675	27.317	2	0.00013413	24208	160511_QHF_FH_JSI11i_1	95.573	66.486			2.4334	2.5494	48.678	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.9867	2.3467	NaN	1	1	Median	2.6255	2.5494	NaN	1	1	Median	1.0202	1.0559	NaN	1	1	Median	411680000	103770000	307910000	0	0	0	192270000	39659000	152610000	168020000	43898000	124120000	51391000	20213000	31177000	53676	4048	50563	324586;324587;324588	437075;437076;437077	437075			3	
VEDYEPYPDDGMGYGDYPK	1	Unmodified	2208.8834	0.88338143	651	O95169	NDUFB8	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.912	61.262	2	1.3782E-13	55780	160511_QHF_FH_JSI12i_1	142.91	137.43			1.5462	1.6213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5462	1.6213	NaN	1	1	Median	20942000	7968900	12973000	0	0	0	0	0	0	0	0	0	20942000	7968900	12973000	53677	651	50564	324589	437078	437078			1	
VEEAEPEEFVVEK	1	Unmodified	1532.7246	0.72461959	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				2	1	2	1	54.879	52.634	2	6.1162E-07	47468	160511_QHF_FH_JSI11i_1	159.94	96.121			1.0728	0.97457	23.412	6	2	Median	0.92703	0.76635	6.4555	2	2	Median	0.69884	0.81818	NaN	1	0	Median	1.2246	1.1813	2.4733	2	0	Median	1.1843	1.2174	NaN	1	0	Median	839060000	413770000	425290000	315150000	157090000	158060000	160280000	93420000	66860000	174410000	84039000	90372000	189220000	79219000	110000000	53678	2367	50565	324590;324591;324592;324593;324594;324595	437079;437080;437081;437082;437083;437084;437085;437086;437087	437080			9	
VEEAQGMMK	1	Unmodified	1021.4573	0.45725205	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	17.865	17.584	2	0.0014448	14832	160511_QHF_FH_JSI11i_1	71.692	44.555			0.98616	0.9651	23.159	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2178	1.4341	NaN	1	0	Median	0.98616	0.95553	NaN	1	1	Median	0.92976	0.9651	NaN	1	0	Median	306250000	162260000	143990000	0	0	0	89443000	43884000	45559000	97825000	44998000	52826000	118980000	73375000	45608000	53679	660	50566	324596;324597;324598;324599	437088;437089;437090;437091	437089			4	
VEEATVEER	0	Unmodified	1060.5037	0.50366819	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	14.368	11.012	2	0.0017027	9625	160511_QHF_FH_JSI10i_1	67.897	12.527			0.97041	1.0152	8.7913	7	2	Median	1.3239	1.0772	NaN	1	0	Median	0.9195	1.0664	8.5499	2	0	Median	0.95519	0.92906	12.114	2	1	Median	0.95189	1.0241	1.2301	2	1	Median	1350400000	605990000	744440000	287390000	109810000	177590000	328990000	158310000	170680000	392570000	172630000	219940000	341460000	165240000	176220000	53680	2521	50567	324600;324601;324602;324603;324604;324605;324606	437092;437093;437094;437095	437093			4	
VEEDIQQQK	1	Unmodified	1115.5459	0.54586736	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.997	11.867	2	0.023211	9453	160511_QHF_FH_JSI11i_1	49.554	33.912			0.77546	0.76341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77546	0.76341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27553000	13223000	14330000	0	0	0	0	0	0	27553000	13223000	14330000	0	0	0	53681	1085	50568	324607	437096	437096			1	
VEEDVASDLVMK	1	Unmodified	1333.6435	0.64353249	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	56.325	55.67	2	0.00032435	50546	160511_QHF_FH_JSI12i_1	72.652	54.341			2.3721	2.1637	61.275	4	2	Median	3.5719	2.8607	NaN	1	1	Median	4.5555	5.4517	NaN	1	1	Median	1.4402	1.417	NaN	1	0	Median	1.5753	1.6365	NaN	1	0	Median	1185800000	282240000	903580000	253310000	56201000	197110000	588180000	85366000	502810000	193180000	82832000	110350000	151150000	57840000	93312000	53682	5135	50569	324608;324609;324610;324611	437097;437098;437099;437100	437098			4	
VEEDYLWR	0	Unmodified	1108.5189	0.51892433	5260	Q9UBW7	ZMYM2	Zinc finger MYM-type protein 2	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				85.24	83.987	2	0.018003	68987	160511_QHF_FH_JSI9i_3	58.167	39.843			4.2647	3.5213	NaN	1	1	Median	4.2647	3.5213	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21101000	3552100	17549000	21101000	3552100	17549000	0	0	0	0	0	0	0	0	0	53683	5260	50570	324612	437101	437101			1	
VEEEAAQK	1	Unmodified	902.43453	0.434526	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	5.68	5	1			3	3				2	3	4	3	5.8675	1.4353	2	0.00037623	3266	160511_QHF_FH_JSI12i_1	110.31	53.763			1.0588	1.1494	13.729	10	0	Median	NaN	NaN	NaN	0	0	Median	1.1938	1.4288	11.167	3	0	Plateau	1.0569	1.038	14.006	4	0	Median	0.93964	0.99733	9.272	3	0	Plateau	7120300000	3614800000	3505500000	0	0	0	2026000000	1002400000	1023500000	2565200000	1268300000	1296800000	2529100000	1344000000	1185100000	53684	1436	50571	324613;324614;324615;324616;324617;324618;324619;324620;324621;324622;324623;324624	437102;437103;437104;437105;437106;437107;437108;437109;437110;437111;437112;437113;437114;437115;437116;437117	437105			16	
VEEEIQTLSQVLAAK	1	Unmodified	1656.8934	0.89341625	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.74	0.714	8	8	3							5	6	4	4	83.905	83.245	2;3	2.4614E-16	73165	160511_QHF_FH_JSI11i_2	169.23	147.2			0.93375	0.97205	24.807	17	4	Median	1.1503	0.97971	42.44	5	2	Median	0.83867	1.0115	20.885	4	1	Median	0.90216	0.87883	6.4628	4	1	Median	0.97891	1.0719	10.127	4	0	Median	4338400000	2256300000	2082100000	785650000	327650000	458010000	1416800000	755410000	661420000	1076100000	614820000	461330000	1059800000	558440000	501370000	53685	1858	50572	324625;324626;324627;324628;324629;324630;324631;324632;324633;324634;324635;324636;324637;324638;324639;324640;324641;324642;324643	437118;437119;437120;437121;437122;437123;437124;437125;437126;437127;437128;437129;437130;437131;437132;437133;437134;437135;437136;437137;437138;437139;437140;437141;437142;437143;437144;437145;437146;437147;437148;437149;437150;437151;437152;437153;437154;437155	437149			38	
VEEEIVTLR	0	Unmodified	1086.5921	0.59208927	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.905	45.411	2	0.00028232	41450	160511_QHF_FH_JSI12i_1	95.358	71.93			1.4123	1.3665	4.2509	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.2331	1.4636	NaN	1	1	Median	1.4123	1.3665	NaN	1	1	Median	1.4237	1.4769	NaN	1	1	Median	1485200000	581140000	904020000	0	0	0	468070000	182550000	285520000	523830000	216520000	307310000	493250000	182070000	311180000	53686	329	50573	324644;324645;324646	437156;437157;437158	437157			3	
VEEFLYEK	1	Unmodified	1055.5175	0.51752734	4944	Q9NR46	SH3GLB2	Endophilin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.569	42.911	2	0.0076141	38154	160511_QHF_FH_JSI9i_1	58.981	38.356			1.4413	1.4785	10.081	4	0	Median	1.7379	1.4797	NaN	1	0	Median	1.2353	1.4774	NaN	1	0	Median	1.3198	1.278	NaN	1	0	Median	1.574	1.6324	NaN	1	0	Median	264460000	110000000	154460000	36815000	13647000	23168000	77414000	39678000	37736000	60644000	29059000	31585000	89590000	27616000	61973000	53687	4944	50574	324647;324648;324649;324650	437159	437159			1	
VEEIAASK	1	Unmodified	845.44945	0.44944778	2190	Q02543	RPL18A	60S ribosomal protein L18a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.58	5		2		1	4				3	3	3	3	14.351	10.188	2	0.00064102	9641	160511_QHF_FH_JSI12i_1	101.54	52.183			0.88876	0.97799	28.136	12	2	Median	1.652	1.3951	41.909	3	2	Median	0.78596	0.91256	7.1729	3	0	Median	1.0275	1.0098	25.607	3	0	Plateau	0.83658	0.87565	12.827	3	0	Median	25549000000	11349000000	14200000000	9686900000	3290400000	6396500000	4740000000	2356100000	2383900000	6032300000	2835000000	3197300000	5090100000	2867400000	2222700000	53688	2190	50575	324651;324652;324653;324654;324655;324656;324657;324658;324659;324660;324661;324662	437160;437161;437162;437163;437164;437165;437166;437167;437168;437169;437170;437171;437172;437173;437174	437164			15	
VEEILEQADYLYESGETEK	1	Unmodified	2244.0322	0.032154154	4024	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	81.458	81.034	2;3	1.3324E-20	73714	160511_QHF_FH_JSI10i_1	192.51	179.95			0.40218	0.38311	71.228	5	5	Median	0.31867	0.25265	NaN	1	1	Median	1.1659	1.3603	NaN	1	1	Median	0.40218	0.38311	NaN	1	1	Median	0.31377	0.32125	48.806	2	2	Median	229990000	128400000	101580000	26154000	12039000	14115000	62782000	33323000	29459000	38031000	20204000	17827000	103020000	62835000	40185000	53689	4024	50576	324663;324664;324665;324666;324667;324668;324669	437175;437176;437177;437178;437179;437180;437181	437180			7	
VEEINPEYMLEK	1	Unmodified	1492.7119	0.71194641	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				69.811	68.851	2	3.977E-05	61206	160511_QHF_FH_JSI9i_1	112.13	89.592			0.38591	0.31052	NaN	1	1	Median	0.38591	0.31052	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	260390000	187310000	73079000	260390000	187310000	73079000	0	0	0	0	0	0	0	0	0	53690	1532	50577	324670	437182	437182			1	
VEEISPNIR	0	Unmodified	1055.5611	0.56112349	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.835	32.233	2	0.00097524	29105	160511_QHF_FH_JSI12i_1	82.452	63.677			0.88565	0.93815	7.6285	4	1	Median	1.2202	1.0164	NaN	1	0	Median	0.79864	0.9236	NaN	1	0	Median	0.9676	0.95292	NaN	1	0	Median	0.81063	0.84601	NaN	1	1	Median	697150000	369350000	327800000	149640000	72896000	76744000	202710000	117570000	85142000	224750000	116220000	108520000	120050000	62664000	57387000	53691	5295	50578	324671;324672;324673;324674	437183;437184;437185;437186	437184			4	
VEEKPPNPMEGMTEEQK	2	Unmodified	1971.8918	0.89177804	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	42.379	41.752	3	0.0048442	37828	160511_QHF_FH_JSI12i_1	66.201	51.729			0.82403	0.84069	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82403	0.84069	NaN	1	0	Median	83915000	43305000	40610000	0	0	0	0	0	0	0	0	0	83915000	43305000	40610000	53692	4908	50579	324675	437187	437187			0	
VEEKPPPAPSIATKPVR	2	Acetyl (K)	1857.036	0.035998161	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	1	0	0	2		By MS/MS	By matching	By MS/MS	14.2	0.433							3	1			1	1	2	55.898	45.2	3	0.00024928	25060	160513_QHF_FH_JSI10Kac_4	77.468	66.206			0.99464	0.92325	17.07	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0336	1.2404	NaN	1	0	Median	0.84974	0.85667	NaN	1	0	Median	0.84859	0.92325	8.2241	2	0	Median	37789000	20236000	17553000	0	0	0	17609000	9102800	8506100	3964200	2682000	1282200	16216000	8450900	7764900	53693	5646	50580	324676;324677;324678;324679	437188;437189;437190;437191	437189	3517		4	
VEELIEIK	1	Unmodified	971.55391	0.55391285	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	52.677	52.012	2	0.040791	47329	160511_QHF_FH_JSI12i_1	39.305	19.023			1.5513	1.6125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5513	1.6125	NaN	1	0	Median	51122000	20353000	30769000	0	0	0	0	0	0	0	0	0	51122000	20353000	30769000	53694	3918	50581	324680	437192	437192			1	
VEENFLKLTHVQR	1	Acetyl (K)	1653.8839	0.88385462	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		71.652	62.232	3	1.2302E-06	33748	160513_QHF_FH_JSI11Kac_6	117.08	96.496			0.010696	0.010146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.010696	0.010146	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29277000	29142000	134930	0	0	0	0	0	0	29277000	29142000	134930	0	0	0	53695	3959	50582	324681	437193	437193	3010		1	
VEENFVILFSDLTMHELK	1	Unmodified	2163.0922	0.092192411	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	97.286	88.012	3	8.0638E-12	50361	160513_QHF_FH_JSI9Kac_6	123.55	108.62			0.95816	0.90608	17.434	2	1	Median	0.94343	0.80099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97312	1.025	NaN	1	1	Median	163600000	80850000	82751000	95399000	47702000	47697000	0	0	0	0	0	0	68203000	33148000	35055000	53696	116	50583	324682;324683	437194;437195	437194			2	
VEENPDADSDFDAK	1	Unmodified	1550.6373	0.63726114	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		28.834	28.615	2	0.0069334	25452	160511_QHF_FH_JSI11i_1	50.95	44.978			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53697	4632	50584	324684	437196	437196			1	
VEEQEPELTSTPNFVVEVIK	1	Unmodified	2286.1631	0.16310875	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.836	8	2	3							2	4	4	3	96.38	96.116	2;3	4.9273E-83	87463	160511_QHF_FH_JSI12i_1	304.28	246.48			0.94358	0.93704	6.7095	13	1	Median	1.0816	0.88785	4.6513	2	0	Median	0.79178	0.92829	8.2516	4	1	Median	0.90401	0.9429	7.1116	4	0	Linear	0.93111	0.98897	1.4663	3	0	Median	4260600000	2054100000	2206500000	579340000	260410000	318930000	1411200000	728100000	683090000	1053300000	504640000	548700000	1216800000	560930000	655840000	53698	2251	50585	324685;324686;324687;324688;324689;324690;324691;324692;324693;324694;324695;324696;324697	437197;437198;437199;437200;437201;437202;437203;437204;437205;437206;437207;437208;437209;437210;437211;437212;437213;437214;437215;437216;437217;437218;437219;437220;437221;437222;437223;437224;437225;437226;437227;437228;437229;437230;437231;437232;437233;437234;437235;437236;437237;437238;437239;437240;437241;437242	437219			46	
VEESGYAGFIMPIEVHFK	1	Unmodified	2052.0026	0.002649122	2201	Q03111	MLLT1	Protein ENL	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	96.928	96.642	3	0.0009265	85410	160511_QHF_FH_JSI10i_2	48.883	44.266			0.98359	1.0926	7.6209	3	1	Median	NaN	NaN	NaN	0	0	Median	0.7647	0.97204	NaN	1	0	Median	1.1548	1.1216	NaN	1	1	Median	0.98359	1.0926	NaN	1	0	Median	46347000	21340000	25006000	0	0	0	13696000	5927600	7768500	17602000	7936600	9665900	15048000	7476200	7572100	53699	2201	50586	324698;324699;324700	437243;437244;437245;437246;437247	437245			5	
VEESSWLIEDGK	1	Unmodified	1390.6616	0.6616254	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.142	54.483	2	2.1051E-06	49200	160511_QHF_FH_JSI11i_1	125.74	111.07			0.65193	0.66342	20.114	4	0	Median	0.92442	0.7614	NaN	1	0	Median	0.48951	0.57805	NaN	1	0	Median	0.5578	0.53664	NaN	1	0	Median	0.76195	0.80725	NaN	1	0	Median	2985300000	1877200000	1108100000	784010000	455320000	328690000	812480000	555480000	257000000	580980000	370020000	210960000	807810000	496390000	311420000	53700	5497	50587	324701;324702;324703;324704	437248;437249;437250;437251;437252;437253;437254	437248			7	
VEESYAMPTK	1	Unmodified	1153.5325	0.53252548	4086	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.44	29.07	2	0.002406	25775	160511_QHF_FH_JSI11i_1	60.064	44.683			0.88118	0.91979	16.072	3	0	Median	NaN	NaN	NaN	0	0	Median	0.6757	0.79075	NaN	1	0	Median	1.123	1.0903	NaN	1	0	Median	0.88118	0.91979	NaN	1	0	Median	306550000	174680000	131870000	0	0	0	92372000	54860000	37511000	89034000	44781000	44253000	125140000	75036000	50105000	53701	4086	50588	324705;324706;324707;324708	437255;437256;437257;437258	437255			4	
VEETKDK	2	Acetyl (K)	889.43928	0.43927702	5798				yes	yes	1	0	0	1			By MS/MS		13	0						1						1		20.576	13.113	2	0.024978	8906	160513_QHF_FH_JSI11Kac_3	79.597	18.837	+		3.6017	3.5714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6017	3.5714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55629000	4715300	50914000	0	0	0	0	0	0	55629000	4715300	50914000	0	0	0	53702	5798	50589	324709	437259	437259	3565		1	
VEEVELPVEK	1	Unmodified	1169.618	0.61796967	4325	Q99873;Q9NR22	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	yes	no	0	0	0	0				By MS/MS	13	0						1							1	59.604	50.413	2	0.038183	26500	160513_QHF_FH_JSI12Kac_3	41.448	15.064			0.89733	0.96789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89733	0.96789	NaN	1	0	Median	2604800	1000200	1604700	0	0	0	0	0	0	0	0	0	2604800	1000200	1604700	53703	4325	50590	324710	437260	437260			1	
VEEVGPYTYR	0	Unmodified	1211.5823	0.58225287	2489	Q14108	SCARB2	Lysosome membrane protein 2	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1.5	0.5	2	2								2	1		1	36.629	35.672	2	0.0098655	31286	160511_QHF_FH_JSI9i_1	48.423	28.094			1.5548	1.4354	47.419	4	2	Median	1.431	1.2007	2.3725	2	1	Median	2.6812	3.2818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.644	1.6875	NaN	1	1	Median	247620000	79927000	167700000	122330000	37426000	84904000	44351000	12805000	31547000	0	0	0	80943000	29696000	51246000	53704	2489	50591	324711;324712;324713;324714	437261;437262;437263	437262			3	
VEFATLQEALAHALTEK	1	Unmodified	1869.9836	0.98362824	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	101.39	101.37	3	9.9566E-24	88042	160511_QHF_FH_JSI12i_3	182.7	162.88			0.90532	0.93963	23.507	3	1	Median	0.8138	0.68152	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1422	1.0774	NaN	1	1	Median	0.90532	0.93963	NaN	1	0	Median	866160000	426250000	439910000	73653000	37114000	36540000	0	0	0	276310000	122450000	153860000	516190000	266680000	249510000	53705	2587	50592	324715;324716;324717	437264;437265;437266	437265			3	
VEFFPHQEK	1	Unmodified	1159.5662	0.56620887	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	35.776	35.062	2;3	0.012137	30176	160511_QHF_FH_JSI11i_3	47.96	29.177			1.4984	1.5136	43.078	4	1	Median	NaN	NaN	NaN	0	0	Median	1.8232	2.2159	NaN	1	0	Median	1.7932	1.7727	NaN	1	0	Median	0.96712	1.0298	32.124	2	1	Median	252070000	112840000	139220000	0	0	0	37292000	17588000	19704000	46767000	17548000	29218000	168010000	77707000	90300000	53706	2956	50593	324718;324719;324720;324721;324722;324723	437267;437268;437269;437270;437271;437272	437267			6	
VEFLRNELEIPGQYDGR	0	Unmodified	2034.0171	0.017053633	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	74.767	74.115	3	1.4131E-05	66099	160511_QHF_FH_JSI11i_3	89.344	77.701			0.94996	0.94078	20.813	5	1	Median	0.94996	0.80073	NaN	1	0	Median	1.0219	1.2288	6.7325	2	1	Median	0.97897	0.94078	NaN	1	0	Median	0.81317	0.83809	NaN	1	0	Median	618400000	306190000	312210000	75713000	34547000	41166000	156720000	77720000	79001000	242450000	108140000	134310000	143520000	85786000	57731000	53707	2094	50594	324724;324725;324726;324727;324728	437273;437274;437275;437276;437277;437278;437279	437273			7	
VEFMDDTSR	0	Oxidation (M)	1114.4601	0.46008882	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.21	6					4	3			2	3	3	5	26.012	21.752	2	0.00086712	29630	160511_QHF_FH_JSI12i_1	78.113	76.055			0.93946	0.98733	10.292	12	0	Median	1.4316	1.1915	NaN	1	0	Median	0.8388	0.99414	7.803	3	0	Median	0.97473	0.94127	8.2664	3	0	Median	0.90758	0.98057	12.11	5	0	Median	1819000000	896380000	922570000	116570000	37867000	78702000	120140000	63373000	56766000	789280000	396280000	393000000	792970000	398870000	394100000	53708	2028	50595	324729;324730;324731;324732;324733;324734;324735;324736;324737;324738;324739;324740;324741	437280;437281;437282;437283;437284;437285;437286;437287;437288;437289;437290;437291;437292	437282		1689	13	
VEFMDDTSR	0	Unmodified	1098.4652	0.4651742	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.95	4	3				1	3			1	3	3	4	36.464	32.492	2	1.8836E-06	29519	160511_QHF_FH_JSI12i_1	129.42	119.01			0.9179	1.0315	12.868	11	0	Median	1.3217	1.1067	NaN	1	0	Median	0.86535	1.0315	11.119	3	0	Median	1.0806	1.0524	17.664	3	0	Median	0.87104	0.95873	11.564	4	0	Median	11681000000	5458300000	6222400000	2555900000	991730000	1564200000	3428700000	1780500000	1648100000	3264400000	1452500000	1811900000	2431700000	1233500000	1198200000	53709	2028	50595	324742;324743;324744;324745;324746;324747;324748;324749;324750;324751;324752	437293;437294;437295;437296;437297;437298;437299;437300;437301;437302;437303;437304;437305;437306;437307	437297			15	
VEFSISDK	1	Unmodified	923.46001	0.46001246	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	2	1	41.916	41.338	2	0.020585	37198	160511_QHF_FH_JSI11i_1	45.68	26.949			0.92031	0.90565	22.145	5	0	Median	0.9547	0.82204	NaN	1	0	Median	0.83441	1.0045	NaN	1	0	Median	0.79571	0.78818	19.647	2	0	Median	1.1806	1.241	NaN	1	0	Median	467570000	227870000	239700000	38575000	16305000	22270000	125860000	48976000	76883000	180620000	96588000	84030000	122520000	66004000	56518000	53710	543	50596	324753;324754;324755;324756;324757	437308;437309;437310;437311	437308			4	
VEFTEDLQK	1	Unmodified	1107.5448	0.54480473	605	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				43.802	42.585	2	0.0098117	37796	160511_QHF_FH_JSI9i_1	51.113	12.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53711	605	50597	324758	437312	437312			1	
VEFTFPDFVTEGAR	0	Unmodified	1613.7726	0.77257283	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	97.24	96.961	2	0.00022668	83449	160511_QHF_FH_JSI12i_2	104.52	89.551			1.0988	1.2079	7.8075	3	1	Median	NaN	NaN	NaN	0	0	Median	0.9377	1.2079	NaN	1	1	Median	1.1176	1.0623	NaN	1	0	Median	1.0988	1.2234	NaN	1	0	Median	43777000	19559000	24218000	0	0	0	12702000	5492500	7209500	15471000	7303900	8167500	15604000	6762600	8841500	53712	226	50598	324759;324760;324761	437313;437314;437315;437316;437317	437313			5	
VEFVHMLNATMCATTR	0	Unmodified	1879.8743	0.87429426	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	73.521	72.943	3	1.1757E-05	63227	160511_QHF_FH_JSI12i_3	94.882	77.081			1.1003	1.0239	8.1504	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88464	1.0239	NaN	1	0	Median	1.0376	0.97461	NaN	1	0	Median	1.1384	1.1428	NaN	1	0	Median	110740000	54442000	56294000	0	0	0	12257000	7248800	5007800	45844000	25689000	20155000	52635000	21504000	31131000	53713	1667	50599	324762;324763;324764	437318;437319;437320	437320			3	
VEGDLKGPEVDLK	2	Unmodified	1397.7402	0.74021007	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.546	40.901	3	0.0012111	36670	160511_QHF_FH_JSI10i_1	56.482	0			0.82628	0.81171	24.369	4	1	Median	0.80085	0.66577	NaN	1	1	Median	0.71212	0.83228	NaN	1	0	Median	0.85251	0.79166	NaN	1	0	Median	1.1626	1.1896	NaN	1	0	Median	274630000	160940000	113690000	45431000	26687000	18744000	91765000	56316000	35448000	68816000	40862000	27955000	68617000	37076000	31540000	53714	2286	50600	324765;324766;324767;324768	437321;437322;437323;437324	437323			4	
VEGFPTIYFAPSGDK	1	Unmodified	1626.793	0.79297392	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	3.13	8	6	3					1		7	4	4	3	84.382	83.086	2;3	7.0101E-52	74691	160511_QHF_FH_JSI9i_1	218.54	199.8			1.0346	1.0077	18.114	15	3	Median	1.0844	0.88596	11.58	5	1	Median	0.92307	1.0638	17.794	4	1	Median	1.052	1.0123	18.341	3	1	Median	1.0077	1.05	22.583	3	0	Median	2588300000	1279400000	1308900000	646610000	306820000	339790000	696110000	371320000	324790000	636080000	323490000	312580000	609500000	277790000	331720000	53715	1034	50601	324769;324770;324771;324772;324773;324774;324775;324776;324777;324778;324779;324780;324781;324782;324783;324784;324785;324786	437325;437326;437327;437328;437329;437330;437331;437332;437333;437334;437335;437336;437337;437338;437339;437340;437341;437342;437343;437344;437345;437346;437347;437348;437349;437350;437351;437352;437353;437354;437355;437356;437357;437358;437359;437360;437361;437362;437363	437351			39	
VEGFPTIYFAPSGDKK	2	Unmodified	1754.8879	0.88793694	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	73.704	72.753	3	0.0011061	62842	160511_QHF_FH_JSI12i_2	60.918	45.645			0.95848	1.0019	14.768	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92012	0.90251	NaN	1	1	Median	0.99844	1.1121	NaN	1	1	Median	101740000	47014000	54725000	0	0	0	0	0	0	55377000	24704000	30673000	46363000	22310000	24052000	53716	1034	50602	324787;324788	437364;437365	437364			2	
VEGGTPLFTLRK	1	Unmodified	1316.7452	0.74523587	1465	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			51.44	49.859	3	1.6045E-05	40838	160511_QHF_FH_JSI9i_3	81.494	72.981			0.89463	0.88086	6.5102	2	0	Median	1.0502	0.84123	NaN	1	0	Median	0.76213	0.92236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	236130000	107750000	128380000	151120000	61880000	89238000	85011000	45872000	39139000	0	0	0	0	0	0	53717	1465	50603	324789;324790	437366;437367;437368	437367			3	
VEGHVFPEFK	1	Unmodified	1187.5975	0.597509	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	45.252	44.423	3	0.0064719	38328	160511_QHF_FH_JSI12i_2	33.088	27.246			0.9047	0.9207	23.648	5	0	Median	0.99933	0.84734	NaN	1	0	Median	0.9047	1.1047	NaN	1	0	Median	1.0226	1.0315	NaN	1	0	Median	0.70426	0.74488	29.968	2	0	Median	573650000	298230000	275420000	90091000	39685000	50406000	124440000	61306000	63133000	233740000	126570000	107170000	125380000	70673000	54707000	53718	225	50604	324791;324792;324793;324794;324795	437369;437370;437371;437372	437370			4	
VEGLDPDNVR	0	Unmodified	1112.5462	0.54620171	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	6									2		2	2	32.854	32.163	2	0.0084009	28982	160511_QHF_FH_JSI12i_1	51.415	28.396			0.52093	1.1608	45.126	3	2	Plateau	1.4257	1.1608	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2587	1.2234	NaN	1	1	Median	0.52093	0.5461	NaN	1	0	Median	726740000	378820000	347920000	283000000	130730000	152260000	0	0	0	297280000	131700000	165580000	146460000	116380000	30079000	53719	3906	50605	324796;324797;324798;324799;324800;324801	437373;437374;437375;437376;437377;437378	437376			6	
VEGLHINGPTGGNK	1	Unmodified	1391.7157	0.71572665	3496	Q8N108	MIER1	Mesoderm induction early response protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		28.396	28.396	3	0.018188	24464	160511_QHF_FH_JSI11i_3	39.163	29.876			1.0174	0.98543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0174	0.98543	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64075000	27673000	36401000	0	0	0	0	0	0	64075000	27673000	36401000	0	0	0	53720	3496	50606	324802	437379	437379			1	
VEGLQAQALYPWR	0	Unmodified	1529.7991	0.79906235	2711	Q15811;CON__ENSEMBL:ENSBTAP00000001528	ITSN1	Intersectin-1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.401	74.546	2	0.00014528	65370	160511_QHF_FH_JSI11i_2	104.82	82.138		+	1.1078	1.1242	15.237	4	1	Median	1.2816	1.1306	NaN	1	0	Median	1.1905	1.4489	NaN	1	0	Median	1.0299	1.0132	NaN	1	0	Median	1.0309	1.1178	NaN	1	1	Median	153740000	74474000	79267000	27615000	11483000	16132000	37598000	18990000	18608000	55762000	27392000	28370000	32767000	16609000	16158000	53721	2711	50607	324803;324804;324805;324806	437380;437381;437382;437383;437384	437382			3	
VEGMTELYFQLK	1	Unmodified	1456.7272	0.72720254	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	83.034	82.181	2	0.0053776	72227	160511_QHF_FH_JSI11i_2	62.536	43.756			0.2415	0.25908	3.7565	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2592	0.26606	NaN	1	1	Median	0.22501	0.25229	NaN	1	1	Median	861330000	730290000	131030000	0	0	0	0	0	0	511070000	434050000	77021000	350260000	296240000	54012000	53722	2094	50608	324807;324808	437385;437386	437386			2	
VEGPAFTDAIR	0	Unmodified	1174.5982	0.59823728	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	52.096	51.301	2	0.00024685	44929	160511_QHF_FH_JSI9i_2	78.939	42.238			1.0756	1.0369	10.002	4	1	Median	1.2165	1.036	NaN	1	0	Median	0.76122	0.92891	NaN	1	0	Median	1.0159	1.0378	NaN	1	0	Median	1.1388	1.1861	NaN	1	1	Median	574850000	287550000	287310000	146630000	69056000	77571000	83981000	51907000	32074000	191170000	92785000	98382000	153080000	73797000	79283000	53723	4260	50609	324809;324810;324811;324812	437387;437388;437389;437390;437391;437392;437393	437388			7	
VEGRPGASLPPLDLQALEK	1	Unmodified	1989.0895	0.089490294	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		78.665	77.975	3	5.0862E-05	69780	160511_QHF_FH_JSI11i_3	69.122	58.306			0.91236	0.86726	14.565	5	0	Median	1.031	0.90949	NaN	1	0	Median	0.79638	0.94084	20.519	2	0	Median	0.80848	0.79811	11.752	2	0	Median	NaN	NaN	NaN	0	0	Median	551210000	297010000	254200000	101440000	47701000	53734000	159330000	87383000	71949000	290440000	161930000	128510000	0	0	0	53724	1002	50610	324813;324814;324815;324816;324817	437394;437395;437396;437397;437398;437399;437400;437401;437402;437403;437404	437395			11	
VEGTDVTGIEEVVIPK	1	Unmodified	1683.8931	0.8930819	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	79.022	78.504	2;3	3.2308E-10	71417	160511_QHF_FH_JSI12i_1	146.36	116.61			0.89725	0.90005	15.85	10	5	Median	1.3511	1.1533	27.203	3	2	Plateau	0.71898	0.83917	9.4627	2	1	Median	0.9361	0.90875	2.6343	2	0	Median	0.88669	0.90287	16.602	3	2	Median	508140000	255630000	252510000	152430000	66076000	86352000	95763000	56141000	39623000	126250000	63207000	63039000	133700000	70205000	63496000	53725	4064	50611	324818;324819;324820;324821;324822;324823;324824;324825;324826;324827	437405;437406;437407;437408;437409;437410;437411;437412;437413;437414;437415;437416;437417	437407			13	
VEGTEPTTAFNLFVGNLNFNK	1	Unmodified	2311.1485	0.14846174	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	6.79	7	8	3					1	9	6	6	8	8	99.03	95.873	2;3	0	89375	160511_QHF_FH_JSI9i_2	497.08	461.35			0.98244	1.0185	8.581	28	3	Median	1.1908	1.0028	6.0241	6	1	Median	0.86384	1.0464	7.0456	6	0	Median	0.98621	0.97595	7.1583	8	0	Median	0.97437	1.0469	10.153	8	2	Median	25004000000	12623000000	12381000000	3815600000	1740700000	2074900000	5195500000	2783100000	2412400000	8027400000	4032000000	3995400000	7965500000	4066900000	3898600000	53726	1154	50612	324828;324829;324830;324831;324832;324833;324834;324835;324836;324837;324838;324839;324840;324841;324842;324843;324844;324845;324846;324847;324848;324849;324850;324851;324852;324853;324854;324855	437418;437419;437420;437421;437422;437423;437424;437425;437426;437427;437428;437429;437430;437431;437432;437433;437434;437435;437436;437437;437438;437439;437440;437441;437442;437443;437444;437445;437446;437447;437448;437449;437450;437451;437452;437453;437454;437455;437456;437457;437458;437459;437460;437461;437462;437463;437464;437465;437466;437467	437442			50	
VEGTPSDPNPNDPR	0	Unmodified	1493.6746	0.6746497	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.2	3					1				1	1	1	1	18.517	17.9	2	0.0017403	14942	160511_QHF_FH_JSI9i_1	60.691	42.794			0.73327	0.65571	19.081	3	0	Plateau	0.73327	0.60198	NaN	1	0	Median	0.74191	0.88167	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71055	0.72599	NaN	1	0	Median	195780000	116300000	79486000	70578000	42560000	28018000	55347000	31601000	23746000	0	0	0	69856000	42134000	27722000	53727	4124	50613	324856;324857;324858;324859	437468;437469;437470;437471	437471			3	
VEGVLASVSGTNVK	1	Unmodified	1358.7405	0.74054442	16	A3KN83	SBNO1	Protein strawberry notch homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	49.648	48.739	2	4.0783E-05	41963	160511_QHF_FH_JSI11i_2	78.692	60.828			1.0105	1.1707	54.942	2	1	Median	NaN	NaN	NaN	0	0	Median	0.66316	0.79383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5396	1.7265	NaN	1	1	Median	63623000	33164000	30459000	0	0	0	54495000	30999000	23496000	0	0	0	9127900	2164700	6963300	53728	16	50614	324860;324861;324862;324863	437472;437473;437474;437475	437475			4	
VEHESFEEPALIPVTLSVR	0	Unmodified	2151.1212	0.12118435	3872	Q92692	PVRL2	Nectin-2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	86.538	86.184	3	1.8165E-05	74795	160511_QHF_FH_JSI12i_3	72.772	68.155			0.58413	0.63818	37.992	2	0	Median	NaN	NaN	NaN	0	0	Median	0.41298	0.48783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8262	0.83485	NaN	1	0	Median	51305000	33434000	17871000	0	0	0	15919000	10807000	5111400	0	0	0	35386000	22627000	12760000	53729	3872	50615	324864;324865;324866	437476;437477	437477			2	
VEHFVSILGK	1	Unmodified	1127.6339	0.63389451	3219	Q7L1W4	LRRC8D	Volume-regulated anion channel subunit LRRC8D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	50.605	50.487	3	0.0060553	43320	160511_QHF_FH_JSI12i_3	47.894	29.835			4.5954	4.4368	15.309	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.3534	4.9441	NaN	1	1	Median	3.9446	3.9816	NaN	1	1	Median	50496000	13587000	36909000	0	0	0	0	0	0	21247000	5441000	15806000	29249000	8146000	21103000	53730	3219	50616	324867;324868	437478;437479	437479			2	
VEHGSVALPAIMR	0	Unmodified	1378.7391	0.73910463	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	4	1	3	53.439	52.565	2;3	4.0277E-06	46112	160511_QHF_FH_JSI11i_3	93.839	83.514			0.96999	1.0064	25.668	9	0	Median	1.2971	1.1079	NaN	1	0	Median	0.90257	1.2037	11.351	4	0	Linear	1.0103	0.9305	NaN	1	0	Median	0.92485	0.91051	46.342	3	0	Plateau	1158600000	588590000	569970000	24774000	10322000	14452000	346200000	176920000	169280000	363440000	180870000	182570000	424150000	220480000	203670000	53731	5616	50617	324869;324870;324871;324872;324873;324874;324875;324876;324877;324878	437480;437481;437482;437483;437484;437485;437486;437487;437488;437489;437490;437491;437492	437480			13	
VEHIEWFR	0	Unmodified	1114.556	0.55597854	3868	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	46.865	46.744	3	0.00066997	41187	160511_QHF_FH_JSI11i_3	69.825	66.416			1.0335	1.0109	7.3217	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0263	0.9599	NaN	1	0	Median	1.0409	1.0646	NaN	1	0	Median	117770000	58303000	59465000	0	0	0	0	0	0	50129000	20123000	30006000	67639000	38180000	29459000	53732	3868	50618	324879;324880	437493;437494;437495;437496	437493			4	
VEHLEEGPMIEQLSK	1	Unmodified	1737.8607	0.86073591	5723	Q9Y6G3	MRPL42	39S ribosomal protein L42, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	55.722	54.77	3	2.7152E-05	47346	160511_QHF_FH_JSI11i_2	99.069	78.68			0.91001	0.91864	7.1127	4	0	Median	1.0811	0.92645	NaN	1	0	Median	0.73056	0.9109	NaN	1	0	Median	1.0414	1.0464	NaN	1	0	Median	0.79521	0.89404	NaN	1	0	Median	483070000	258880000	224190000	89021000	43290000	45731000	108520000	63301000	45223000	198850000	110480000	88368000	86675000	41811000	44863000	53733	5723	50619	324881;324882;324883;324884	437497	437497			1	
VEHNQSYSQAGITETEWTSGSSK	1	Unmodified	2525.1306	0.13063942	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	2	3	42.055	41.376	3	5.6827E-73	35364	160511_QHF_FH_JSI12i_3	236.38	226.53			0.8248	0.8539	13.525	6	0	Median	1.2147	1.0603	NaN	1	0	Median	0.69606	0.86284	NaN	1	0	Median	0.79367	0.76717	4.7315	2	0	Median	0.87431	0.91664	11.498	2	0	Median	577800000	297930000	279870000	57739000	27452000	30287000	80171000	36179000	43992000	183880000	106020000	77856000	256010000	128280000	127730000	53734	1527	50620	324885;324886;324887;324888;324889;324890;324891	437498;437499;437500;437501;437502;437503;437504;437505;437506;437507;437508;437509;437510;437511;437512;437513;437514;437515;437516;437517;437518;437519;437520	437519			23	
VEHSDLSFSK	1	Unmodified	1147.551	0.55095274	1963	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.09	6.27	4	9	8				3	7	3	8	9	8	9	26.062	22.343	2;3	1.4831E-06	19094	160511_QHF_FH_JSI9i_2	130.66	117.6			1.0413	1.0789	18.587	31	7	Median	1.3121	1.0431	25.46	7	2	Median	0.84655	1.0057	8.9601	8	1	Median	1.1379	1.1586	19.153	7	3	Median	1.0304	1.1126	17.152	9	1	Median	10125000000	4745800000	5379400000	2059800000	771710000	1288100000	2127800000	1132700000	995090000	3834400000	1867500000	1966800000	2103200000	973840000	1129400000	53735	1963	50621	324892;324893;324894;324895;324896;324897;324898;324899;324900;324901;324902;324903;324904;324905;324906;324907;324908;324909;324910;324911;324912;324913;324914;324915;324916;324917;324918;324919;324920;324921;324922;324923;324924;324925	437521;437522;437523;437524;437525;437526;437527;437528;437529;437530;437531;437532;437533;437534;437535;437536;437537;437538;437539;437540;437541;437542;437543;437544;437545;437546;437547;437548;437549;437550;437551;437552;437553;437554;437555;437556;437557;437558;437559;437560;437561;437562	437541			42	
VEHSPFSSFASQASGSSSSATTVTSK	1	Unmodified	2573.1882	0.1881543	3239	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		52.302	51.433	3	6.7416E-22	45546	160511_QHF_FH_JSI11i_3	126.59	114.4			1.0932	1.1196	11.068	3	1	Plateau	1.0932	0.90361	NaN	1	1	Median	0.94898	1.0553	NaN	1	0	Median	1.2218	1.1196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	137620000	62060000	75555000	26228000	17274000	8954100	39705000	15456000	24249000	71683000	29331000	42352000	0	0	0	53736	3239	50622	324926;324927;324928	437563;437564;437565;437566;437567;437568	437565			6	
VEHVVSVLEK	1	Unmodified	1137.6394	0.63937381	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	3	2	2	2	34.068	32.505	2;3	0.00024811	27436	160511_QHF_FH_JSI12i_3	91.584	80.515			1.0568	1.0667	59.222	9	6	Median	0.97084	0.82772	65.245	3	2	Median	0.47846	0.58851	9.4774	2	2	Median	1.476	1.4304	41.489	2	1	Median	1.8962	1.9427	5.1284	2	1	Median	412740000	210760000	201990000	51041000	29270000	21771000	138750000	92896000	45852000	96078000	31448000	64630000	126880000	57145000	69731000	53737	5135	50623	324929;324930;324931;324932;324933;324934;324935;324936;324937	437569;437570;437571;437572;437573;437574;437575;437576;437577;437578;437579	437579			11	
VEIAGPGFINVHLR	0	Unmodified	1520.8463	0.8463469	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	0.314		1	8							3	2	2	2	75.418	74.444	2;3	1.8221E-15	62502	160511_QHF_FH_JSI10i_3	162.93	144.09			1.0295	1.0063	17.278	7	0	Median	1.2593	1.0063	8.4639	3	0	Plateau	0.89187	1.0108	15.956	2	0	Median	0.88563	0.82034	NaN	1	0	Median	0.71769	0.7416	NaN	1	0	Median	931790000	454860000	476920000	313060000	124320000	188740000	326860000	179190000	147670000	156140000	75684000	80458000	135720000	75668000	60056000	53738	1818	50624	324938;324939;324940;324941;324942;324943;324944;324945;324946	437580;437581;437582;437583;437584;437585;437586;437587;437588;437589;437590;437591;437592;437593;437594	437587			14	
VEIAGPGFINVHLRK	1	Unmodified	1648.9413	0.94130991	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			65.43	63.933	4	0.0019978	53492	160511_QHF_FH_JSI10i_3	57.136	50.097			0.4655	0.51813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4655	0.51813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29177000	17885000	11292000	0	0	0	29177000	17885000	11292000	0	0	0	0	0	0	53739	1818	50625	324947	437595	437595			1	
VEIATLTR	0	Unmodified	901.52328	0.52328142	1267	P25789	PSMA4	Proteasome subunit alpha type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	3	4	3							2	2	3	3	40.148	39.46	2	0.00081956	34608	160511_QHF_FH_JSI9i_2	97.798	35.084			0.96314	1.0351	11.903	10	0	Median	1.2708	1.0419	2.5392	2	0	Median	0.8024	0.96525	11.499	2	0	Median	0.95262	0.99728	7.7613	3	0	Median	0.97377	1.0884	21.727	3	0	Median	4411500000	2293800000	2117800000	818420000	361990000	456430000	1065900000	602720000	463160000	1673600000	867120000	806510000	853590000	461940000	391650000	53740	1267	50626	324948;324949;324950;324951;324952;324953;324954;324955;324956;324957	437596;437597;437598;437599;437600;437601;437602;437603;437604;437605;437606;437607;437608	437603			13	
VEIDQQQLTQQQLNGN	0	Unmodified	1854.9072	0.90716883	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	55.852	54.939	2	4.5557E-07	49903	160511_QHF_FH_JSI12i_1	89.403	76.203			1.0704	1.0017	16.246	2	0	Median	1.3792	1.1236	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83078	0.89297	NaN	1	0	Median	82175000	34961000	47214000	38582000	14957000	23625000	0	0	0	0	0	0	43593000	20004000	23589000	53741	3426	50627	324958;324959;324960	437609;437610;437611;437612	437610			4	
VEIETSEEIQEK	1	Unmodified	1432.6933	0.69331946	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	38.278	37.673	2	0.00029603	34173	160511_QHF_FH_JSI12i_1	75.294	38.601			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53742	2557	50628	324961	437613	437613			1	
VEIHKLR	1	Acetyl (K)	935.55525	0.55525025	216	O14907	TAX1BP3	Tax1-binding protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		34.049	25.164	3	0.027301	14129	160513_QHF_FH_JSI11Kac_6	40.098	24.436			0.5921	0.62614	123.55	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3132	1.4999	NaN	1	0	Median	0.26697	0.26138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25881000	18980000	6900300	0	0	0	4955500	1952900	3002600	20925000	17028000	3897700	0	0	0	53743	216	50629	324962;324963	437614	437614			1	
VEIIANDQGNRTTPSYVAFTDTERLIGDAAK	1	Unmodified	3364.6899	0.68991242	985;954;1827;1416	P0DMV9;P0DMV8;P11142;P54652;P34931	HSPA1B;HSPA1A;HSPA8;HSPA2;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like	no	no	0	0	0	2	By MS/MS				2	0		1								1				90.007	89.603	4	0.0222	78802	160511_QHF_FH_JSI9i_2	24.404	18.974			8.608	7.2329	NaN	1	1	Median	8.608	7.2329	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34607000	1460900	33146000	34607000	1460900	33146000	0	0	0	0	0	0	0	0	0	53744	954;985;1827;1416	50630	324964	437615	437615			1	
VEILANDQGNR	0	Unmodified	1227.6208	0.62076364	1108	P17066;P48741	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.81	6.34	8	4	4		1	4	3	4	3	7	9	7	8	29.418	24.419	2	9.9737E-27	15081	160513_QHF_FH_JSI12Kac_4	178.22	0			0.9653	1.0059	12.674	31	8	Median	1.3126	1.0893	13.914	7	2	Median	0.8182	0.96007	11.017	9	2	Median	1.0577	1.0127	11.583	7	2	Median	0.94986	1.0334	12.884	8	2	Median	79937000000	42715000000	37223000000	18574000000	9981200000	8592900000	21295000000	12207000000	9087900000	19783000000	9507200000	10276000000	20285000000	11019000000	9265900000	53745	1108	50631	324965;324966;324967;324968;324969;324970;324971;324972;324973;324974;324975;324976;324977;324978;324979;324980;324981;324982;324983;324984;324985;324986;324987;324988;324989;324990;324991;324992;324993;324994;324995	437616;437617;437618;437619;437620;437621;437622;437623;437624;437625;437626;437627;437628;437629;437630;437631;437632;437633;437634;437635;437636;437637;437638;437639;437640;437641;437642;437643;437644;437645;437646;437647;437648;437649;437650;437651;437652;437653;437654;437655;437656;437657;437658;437659;437660;437661;437662;437663;437664;437665;437666;437667;437668	437655			53	
VEILNPPR	0	Unmodified	936.53927	0.53926584	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		40.056	39.303	2	0.017275	33641	160511_QHF_FH_JSI11i_2	48.756	14.959			0.95514	0.87463	9.7646	2	0	Median	0.96228	0.81628	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94806	0.93716	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69511000	32841000	36670000	21850000	10916000	10934000	0	0	0	47661000	21925000	25736000	0	0	0	53746	3791	50632	324996;324997	437669;437670	437669			2	
VEILNPPREGK	1	Unmodified	1250.6983	0.69828568	3791	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		32.213	32.213	3	0.0051109	27958	160511_QHF_FH_JSI11i_3	50.95	41.263			0.80614	0.75568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80614	0.75568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31248000	16775000	14473000	0	0	0	0	0	0	31248000	16775000	14473000	0	0	0	53747	3791	50633	324998	437671	437671			1	
VEILPSYIPVR	0	Unmodified	1284.7442	0.74417324	5281	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		80.54	79.872	2	0.0016582	70459	160511_QHF_FH_JSI9i_2	75.378	56.107			0.52594	0.64957	6.0308	3	2	Plateau	0.86349	0.73282	NaN	1	1	Median	0.52594	0.64957	NaN	1	0	Median	0.69224	0.68865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	85058000	47864000	37194000	23384000	11082000	12302000	29251000	17673000	11578000	32422000	19109000	13314000	0	0	0	53748	5281	50634	324999;325000;325001	437672;437673;437674	437672			3	
VEILTALRK	1	Unmodified	1041.6546	0.65462995	3823	Q8WZA0	LZIC	Protein LZIC	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		48.95	48.148	3	0.0001702	42343	160511_QHF_FH_JSI11i_3	64.654	40.665			0.59274	0.51419	88.243	2	1	Median	0.34423	0.27551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0207	0.95965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	273920000	195350000	78568000	199290000	163290000	35994000	0	0	0	74631000	32057000	42574000	0	0	0	53749	3823	50635	325002;325003;325004;325005	437675;437676;437677;437678;437679	437675			5	
VEITPESILSALSK	1	Unmodified	1485.829	0.82902508	2984	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.94	101.76	2	0.0010553	87721	160511_QHF_FH_JSI12i_2	81.676	63.004			1.0887	1.2544	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0887	1.2544	NaN	1	1	Median	66555000	29766000	36789000	0	0	0	0	0	0	0	0	0	66555000	29766000	36789000	53750	2984	50636	325006	437680	437680			1	
VEITYTPSDGTQK	1	Unmodified	1437.6987	0.69873919	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	5.43	4	1	3		3	5				2	5	3	6	43.128	37.456	2;3	3.0758E-67	33784	160511_QHF_FH_JSI12i_1	237.93	226.44			0.94011	1.0052	27.222	12	1	Median	1.0249	0.82667	NaN	1	0	Median	0.99492	1.1866	13.218	4	1	Median	0.94505	0.93075	26.242	3	0	Median	0.59996	0.6391	35.469	4	0	Linear	5073200000	2424800000	2648400000	910430000	320170000	590250000	1266300000	636640000	629650000	1487600000	758310000	729250000	1408900000	709660000	699290000	53751	576	50637	325007;325008;325009;325010;325011;325012;325013;325014;325015;325016;325017;325018;325019;325020;325021;325022	437681;437682;437683;437684;437685;437686;437687;437688;437689;437690;437691;437692;437693;437694;437695;437696;437697;437698;437699;437700;437701;437702;437703;437704;437705;437706;437707;437708;437709	437689			29	
VEIVSMLQEDEK	1	Unmodified	1418.6963	0.69629635	2912	Q5MIZ7	SMEK2	Serine/threonine-protein phosphatase 4 regulatory subunit 3B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.609	67.3	2	0.0036836	60714	160511_QHF_FH_JSI10i_1	64.82	47.589			0.096422	0.11446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.096422	0.11446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53372000	45617000	7754600	0	0	0	53372000	45617000	7754600	0	0	0	0	0	0	53752	2912	50638	325023	437710	437710			1	
VEKPDTK	2	Unmodified	815.43888	0.43888309	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.86	5.5	1	4	5				2	2		3	4	4	3	5.4797	3.0057	3	0.023275	2934	160511_QHF_FH_JSI9i_3	36.395	7.2462			1.0567	1.1517	16.073	12	3	Median	1.6113	1.3368	21.93	2	1	Median	0.96935	1.1463	8.8405	4	1	Median	1.0795	1.066	19.035	4	1	Median	1.1013	1.166	11.349	2	0	Median	15545000000	7782800000	7762200000	2078100000	843420000	1234700000	3470100000	1748200000	1722000000	3426600000	1696300000	1730400000	6570100000	3495000000	3075100000	53753	2196	50639	325024;325025;325026;325027;325028;325029;325030;325031;325032;325033;325034;325035;325036;325037	437711;437712;437713;437714;437715;437716;437717;437718;437719;437720;437721;437722;437723;437724;437725;437726;437727	437719			17	
VELAEEDDGEK	1	Unmodified	1232.5408	0.54084156	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	21.601	21.215	2	0.0029506	18966	160511_QHF_FH_JSI12i_1	56.404	44.557			1.1878	1.3032	7.3549	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2089	1.3728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1672	1.2372	NaN	1	0	Median	63141000	23415000	39726000	0	0	0	23893000	10165000	13728000	0	0	0	39248000	13250000	25998000	53754	4714	50640	325038;325039	437728;437729	437729			2	
VELANMNR	0	Unmodified	945.4702	0.4702	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	26.346	25.07	2	0.025439	20943	160511_QHF_FH_JSI12i_2	44.117	7.9314			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53755	4615	50641	325040	437730	437730			1	
VELAPLPSWQPVGK	1	Unmodified	1519.8399	0.83986454	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.2	0.4	4	1								1	1	2	1	83.549	83.056	2	0.00086501	75289	160511_QHF_FH_JSI10i_1	78.908	44.529			1.1015	1.0365	22.182	5	1	Median	0.95288	0.7777	NaN	1	0	Median	0.7429	0.84132	NaN	1	0	Median	1.1968	1.1695	17.072	2	1	Median	1.1848	1.1754	NaN	1	0	Median	104760000	49391000	55371000	14781000	9045500	5735000	23152000	13215000	9936500	52247000	20832000	31416000	14583000	6299100	8284200	53756	834	50642	325041;325042;325043;325044;325045	437731;437732;437733;437734	437732			4	
VELAQLQEEWNEHNAK	1	Unmodified	1936.9279	0.92790427	4686	Q9H307	PNN	Pinin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	3	4	64.695	64.135	2;3	1.9323E-22	55235	160511_QHF_FH_JSI12i_3	177.04	156.39			0.90314	0.89372	18.645	8	5	Median	0.98364	0.85749	NaN	1	0	Median	0.72119	0.88935	NaN	1	1	Median	0.9105	0.87275	4.1094	2	1	Median	0.90314	0.93742	26.844	4	3	Median	1371000000	784160000	586790000	105020000	64376000	40642000	164330000	102640000	61684000	483380000	282250000	201140000	618220000	334890000	283330000	53757	4686	50643	325046;325047;325048;325049;325050;325051;325052;325053;325054;325055	437735;437736;437737;437738;437739;437740;437741;437742;437743;437744;437745;437746;437747;437748	437744			14	
VELCSFSGYK	1	Unmodified	1188.5485	0.5485099	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.61	5.75	4	4	5				1	4		4	5	5	4	54.729	51.192	2	3.5097E-06	27762	160513_QHF_FH_JSI11Kac_5	118.18	97.848			1.1717	1.2171	26.948	18	6	Median	1.1717	1.0002	12.846	4	1	Median	1.0056	1.1527	14.94	5	2	Median	1.4106	1.3704	34.972	5	2	Median	1.4747	1.6445	17.171	4	1	Median	2623900000	1340000000	1283900000	335670000	164460000	171200000	562630000	331900000	230730000	1029600000	539600000	489990000	695970000	304040000	391940000	53758	2120	50644	325056;325057;325058;325059;325060;325061;325062;325063;325064;325065;325066;325067;325068;325069;325070;325071;325072;325073	437749;437750;437751;437752;437753;437754;437755;437756;437757;437758;437759;437760;437761;437762;437763;437764;437765;437766;437767;437768;437769;437770;437771;437772;437773;437774	437766			26	
VELDNMPLR	0	Unmodified	1085.5539	0.55392962	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	6.03	4	4	1				4	1		3	4	3	4	56.778	52.837	2	5.0724E-06	45337	160511_QHF_FH_JSI12i_2	117.04	92.881			1.1271	1.1457	33.298	13	1	Median	1.349	1.1493	12.071	3	1	Median	0.84127	1.0033	53.521	4	0	Median	1.2442	1.3031	6.2593	3	0	Median	0.88353	0.99402	13.78	3	0	Median	5076500000	2463400000	2613100000	846300000	372360000	473930000	1232600000	674150000	558400000	1777000000	761410000	1015500000	1220700000	655500000	565210000	53759	2644	50645	325074;325075;325076;325077;325078;325079;325080;325081;325082;325083;325084;325085;325086;325087	437775;437776;437777;437778;437779;437780;437781;437782;437783;437784;437785;437786;437787;437788;437789;437790;437791;437792	437778			18	
VELDNMPLRGK	1	Unmodified	1270.6704	0.67035637	2644	Q15233	NONO	Non-POU domain-containing octamer-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	43.542	42.612	2;3	2.6871E-05	35570	160511_QHF_FH_JSI10i_3	93.258	53.341			1.6998	1.6315	22.849	7	0	Median	2.2059	1.8009	6.9174	2	0	Median	1.3277	1.5442	0.67245	2	0	Median	1.9304	1.8176	15.274	2	0	Median	0.96683	0.99837	NaN	1	0	Median	1176800000	455040000	721800000	209210000	73336000	135870000	336310000	139600000	196710000	485530000	169120000	316420000	145780000	72981000	72799000	53760	2644	50646	325088;325089;325090;325091;325092;325093;325094	437793;437794;437795;437796;437797;437798;437799;437800	437797			8	
VELFFKDDANNDPQWSEEQLIAAK	2	Unmodified	2806.345	0.34498929	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	89.676	89.588	3	4.816E-09	77826	160511_QHF_FH_JSI12i_3	81.949	78.793			0.86931	0.86269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86931	0.86269	NaN	1	0	Median	32981000	14336000	18644000	0	0	0	0	0	0	0	0	0	32981000	14336000	18644000	53761	1206	50647	325095	437801;437802;437803	437803			3	
VELGEKPLR	1	Acetyl (K)	1081.6132	0.61315906	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	54.968	44.38	2	0.023634	25169	160513_QHF_FH_JSI12Kac_4	51.059	28.168			0.80583	0.85873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80583	0.85873	NaN	1	0	Median	5259000	2972000	2287000	0	0	0	0	0	0	0	0	0	5259000	2972000	2287000	53762	4399	50648	325096	437804	437804	3152		1	
VELHSTCQTISVDR	0	Unmodified	1643.7937	0.79371898	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		44.248	33.924	3	0.034031	19229	160513_QHF_FH_JSI11Kac_5	32.734	24.953			0.74585	0.72669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74585	0.72669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2055300	1164600	890670	0	0	0	0	0	0	2055300	1164600	890670	0	0	0	53763	116	50649	325097	437805	437805			1	
VELLNQLEEEK	1	Unmodified	1342.698	0.6980109	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1									2	2	2	62.814	62.311	2	9.6508E-05	56552	160511_QHF_FH_JSI11i_1	87.789	54.79			1.0798	1.1308	32.084	6	4	Median	NaN	NaN	NaN	0	0	Median	1.0132	1.1952	21.975	2	2	Median	1.1194	1.1152	16.096	2	0	Median	1.1606	1.2197	65.703	2	2	Median	396920000	186800000	210120000	0	0	0	146880000	67697000	79187000	163730000	73365000	90364000	86307000	45737000	40571000	53764	1360	50650	325098;325099;325100;325101;325102;325103	437806;437807;437808;437809;437810;437811;437812	437807			6	
VELMLPEK	1	Unmodified	957.5205	0.52050423	705	O95563	MPC2	Mitochondrial pyruvate carrier 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	56.109	55.403	2	0.015892	50359	160511_QHF_FH_JSI12i_1	50.04	31.31			1.0374	1.0593	61.9	5	0	Median	1.3112	1.0593	NaN	1	0	Median	1.7727	2.1151	96.534	2	0	Median	1.0374	1.0254	NaN	1	0	Median	1.0019	1.0438	NaN	1	0	Median	382630000	182390000	200240000	49793000	19841000	29951000	129940000	61015000	68922000	112880000	51073000	61804000	90024000	50458000	39566000	53765	705	50651	325104;325105;325106;325107;325108	437813;437814;437815;437816;437817	437815			5	
VELNALMTDETISNVPILILGNK	1	Unmodified	2496.3509	0.35092629	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.57	0.495	3	4								1	2	3	1	102.25	102.17	2;3	5.6213E-288	89929	160511_QHF_FH_JSI11i_2	409.14	390.31			1.0402	1.1018	22.77	7	3	Median	1.0402	0.88938	NaN	1	1	Median	0.92258	1.1174	14.689	2	1	Median	1.3474	1.3793	13.332	3	1	Median	0.72764	0.75991	NaN	1	0	Median	1974800000	1123500000	851320000	256220000	165030000	91194000	744220000	424070000	320150000	809400000	429940000	379460000	164940000	104440000	60506000	53766	4941	50652	325109;325110;325111;325112;325113;325114;325115	437818;437819;437820;437821;437822;437823;437824;437825	437824			7	
VELPGTAVPSVPEDAAPASR	0	Unmodified	1962.0058	0.0058202445	1840	P55011	SLC12A2	Solute carrier family 12 member 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	67.782	67.105	2	3.1835E-08	59629	160511_QHF_FH_JSI9i_1	107.61	85.411			1.1687	1.1371	5.5231	3	1	Median	1.5311	1.2466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1687	1.1371	NaN	1	1	Median	1.1379	1.1291	NaN	1	0	Median	45190000	18955000	26235000	16488000	7684400	8803500	0	0	0	14656000	4500600	10156000	14046000	6769900	7276400	53767	1840	50653	325116;325117;325118	437826;437827;437828;437829	437829			4	
VELPLYNQPSDTK	1	Unmodified	1502.7617	0.76167379	513	O75376	NCOR1	Nuclear receptor corepressor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	58.748	58.039	2	0.0021892	51271	160511_QHF_FH_JSI9i_1	65.574	59.041			0.92377	1.069	12.511	7	0	Median	1.4198	1.1879	0.1394	2	0	Median	0.91927	1.0991	3.9261	2	0	Median	0.93128	0.94055	8.5528	2	0	Median	0.84238	0.89227	NaN	1	0	Median	6282200000	2979200000	3303000000	1499400000	631550000	867900000	1678400000	774160000	904220000	2345700000	1214300000	1131400000	758670000	359150000	399520000	53768	513	50654	325119;325120;325121;325122;325123;325124;325125	437830;437831;437832;437833;437834	437833			5	
VELQELNDR	0	Unmodified	1114.5619	0.56185177	913	P08670;P17661	VIM;DES	Vimentin;Desmin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			1	3	2	3	38.983	36.17	2	5.4451E-06	31901	160511_QHF_FH_JSI10i_2	115.7	65.572			0.84928	0.96348	12.252	9	1	Median	1.0882	0.9322	NaN	1	0	Median	0.82871	0.97769	4.6165	3	0	Median	0.83056	0.81847	23.169	2	1	Median	0.83562	0.88371	8.4473	3	0	Plateau	1729200000	911380000	817850000	66032000	28728000	37304000	661940000	380310000	281630000	506730000	260730000	246000000	494540000	241610000	252920000	53769	913	50655	325126;325127;325128;325129;325130;325131;325132;325133;325134	437835;437836;437837;437838;437839;437840;437841;437842;437843;437844;437845;437846;437847;437848;437849;437850	437849			16	
VELQELNDRFANYIDK	1	Unmodified	1965.9796	0.97960549	913	P08670	VIM	Vimentin	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		77.233	76.533	3	0.0087324	68346	160511_QHF_FH_JSI11i_3	48.053	34.068			1.141	1.1937	13.545	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1404	1.3137	NaN	1	1	Median	1.1415	1.0847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	187430000	93546000	93883000	0	0	0	61157000	29729000	31429000	126270000	63817000	62455000	0	0	0	53770	913	50656	325135;325136	437851;437852	437851			2	
VELQQGLR	0	Unmodified	941.52943	0.52942943	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		28.7	27.996	2	0.0081696	23553	160511_QHF_FH_JSI11i_2	57.281	31.544			1.0244	0.95632	0.24627	2	0	Median	1.1256	0.95799	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93227	0.95466	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	177890000	94532000	83355000	82803000	41576000	41227000	0	0	0	95084000	52956000	42129000	0	0	0	53771	3844	50657	325137;325138	437853	437853			1	
VELSDVQNPAISITENVLHFK	1	Unmodified	2352.2325	0.23252572	5177	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							1	2	3	2	101.49	101.43	3	1.6825E-22	89077	160511_QHF_FH_JSI11i_2	158.5	143.49			1.0571	1.0678	23.474	8	3	Median	0.95873	0.79536	NaN	1	0	Median	1.083	1.2737	29.708	2	0	Median	0.94492	0.97273	13.117	3	1	Median	1.272	1.3146	6.5097	2	2	Median	3814800000	1924800000	1890000000	630340000	328320000	302030000	813010000	422270000	390740000	1406000000	724480000	681490000	965470000	449730000	515740000	53772	5177	50658	325139;325140;325141;325142;325143;325144;325145;325146	437854;437855;437856;437857;437858;437859;437860;437861;437862	437857			9	
VELSEQQLQLWPSDVDK	1	Unmodified	2013.0055	0.0054858935	933	P09543	CNP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	86.013	85.611	2;3	2.9756E-22	77939	160511_QHF_FH_JSI12i_1	212.95	185.09			0.90125	0.88096	9.1287	7	1	Median	1.1113	0.89843	NaN	1	1	Median	0.87844	1.0033	3.9293	2	0	Median	0.90933	0.87035	0.61531	2	0	Median	0.79181	0.82656	9.0137	2	0	Median	199200000	107790000	91411000	13402000	6033000	7368900	72968000	36573000	36395000	56034000	29552000	26482000	56798000	35634000	21165000	53773	933	50659	325147;325148;325149;325150;325151;325152;325153	437863;437864;437865;437866;437867;437868;437869;437870;437871;437872;437873;437874;437875;437876	437869			14	
VELSNGEK	1	Unmodified	874.43961	0.43961137	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	11.417	11.018	2	0.016557	8652	160511_QHF_FH_JSI11i_1	49.423	22.302			1.0664	1.1432	25.75	4	0	Median	1.8068	1.4986	NaN	1	0	Median	1.0403	1.2376	NaN	1	0	Median	1.0931	1.056	NaN	1	0	Median	0.79324	0.8154	NaN	1	0	Median	792430000	391900000	400520000	200890000	81648000	119240000	190010000	106440000	83572000	212360000	104410000	107950000	189170000	99410000	89761000	53774	2131	50660	325154;325155;325156;325157	437877;437878;437879	437877			3	
VELSPMQK	1	Unmodified	930.48445	0.48445308	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	31.837	31.456	2	0.011461	28045	160511_QHF_FH_JSI11i_1	54.157	23.972			1.2156	1.1791	28.509	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.58157	0.68817	NaN	1	1	Median	1.2156	1.1791	NaN	1	0	Median	1.0188	1.0596	NaN	1	0	Median	487760000	280720000	207040000	0	0	0	173460000	116670000	56787000	164360000	83530000	80832000	149940000	80517000	69424000	53775	2578;2318	50661	325158;325159;325160	437880;437881	437880			2	
VELSQLR	0	Unmodified	843.48142	0.48141661	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.43	6.61	2	4	1				2	3	2	3	5	4	2	39.006	33.691	2	0.01534	27857	160511_QHF_FH_JSI10i_3	64.803	4.0434			1.0505	1.1499	18.679	14	0	Median	1.4317	1.1888	10.692	3	0	Median	0.99592	1.1925	15.44	5	0	Median	1.0698	1.0577	9.0787	4	0	Median	0.7136	0.77403	11.882	2	0	Median	8709600000	4377900000	4331700000	1687200000	740190000	947020000	1818000000	826420000	991560000	3507200000	1839800000	1667300000	1697200000	971490000	725750000	53776	1546	50662	325161;325162;325163;325164;325165;325166;325167;325168;325169;325170;325171;325172;325173;325174	437882;437883;437884;437885;437886;437887;437888;437889;437890	437883			9	
VELTITPDFQWDEK	1	Unmodified	1719.8356	0.83556702	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									2	1	2	91.161	90.934	2	3.2317E-21	82727	160511_QHF_FH_JSI12i_1	199.43	156.12			0.47667	0.70982	26.315	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.56461	0.66509	44.39	2	1	Median	0.79802	0.75131	NaN	1	1	Median	0.63219	0.67061	NaN	1	0	Median	203580000	122680000	80897000	0	0	0	129390000	84696000	44691000	24840000	12296000	12544000	49355000	25693000	23662000	53777	552	50663	325175;325176;325177;325178;325179	437891;437892;437893;437894;437895	437893			5	
VELTPVAIQAGR	0	Unmodified	1252.7139	0.71393574	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	2	3	58.403	56.409	2	1.0287E-07	48362	160511_QHF_FH_JSI12i_2	153.05	121.82			0.91238	0.9484	14.937	8	0	Median	1.36	1.1571	NaN	1	0	Median	0.91402	1.0874	1.6165	2	0	Median	0.94167	0.94139	7.6764	2	0	Median	0.79112	0.88718	10.36	3	0	Plateau	2270800000	1177100000	1093700000	305790000	118060000	187730000	600310000	315590000	284720000	810980000	413840000	397140000	553710000	329570000	224140000	53778	2778	50664	325180;325181;325182;325183;325184;325185;325186;325187	437896;437897;437898;437899;437900;437901;437902;437903;437904;437905;437906;437907;437908;437909	437899			14	
VELVLSQK	1	Unmodified	914.54368	0.54368251	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.25	0.433	3	1									1	2	1	41.142	40.684	2	0.018457	36457	160511_QHF_FH_JSI10i_1	47.657	19.551			1.1869	1.2148	27.104	4	0	Median	NaN	NaN	NaN	0	0	Median	0.67913	0.79063	NaN	1	0	Median	1.3817	1.3578	14.969	2	0	Median	1.1209	1.2083	NaN	1	0	Median	176120000	85569000	90554000	0	0	0	50239000	29731000	20507000	89126000	38224000	50901000	36759000	17613000	19145000	53779	5463	50665	325188;325189;325190;325191	437910;437911	437910			2	
VELVPPTPAEIPR	0	Unmodified	1416.7977	0.79766537	592	O75964	ATP5L	ATP synthase subunit g, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.72	4.65	8	4	3				3			4	6	4	4	73.316	70.789	2;3	2.4251E-05	65108	160511_QHF_FH_JSI12i_1	120.09	90.617			0.96566	1.0574	9.5381	17	3	Median	1.2957	1.0624	8.6012	3	0	Median	0.89309	1.0516	13.165	6	3	Median	1.0514	1.0858	5.1821	4	0	Linear	0.99264	0.98425	5.3092	4	0	Linear	2587800000	1277400000	1310400000	585800000	260920000	324880000	676660000	364410000	312250000	691500000	344230000	347270000	633800000	307800000	326010000	53780	592	50666	325192;325193;325194;325195;325196;325197;325198;325199;325200;325201;325202;325203;325204;325205;325206;325207;325208;325209	437912;437913;437914;437915;437916;437917;437918;437919;437920;437921;437922;437923;437924;437925;437926;437927;437928;437929;437930;437931;437932;437933;437934;437935;437936;437937;437938;437939;437940;437941;437942;437943;437944;437945;437946;437947;437948;437949;437950	437925			39	
VELVTGEEDEK	1	Unmodified	1246.5929	0.59287713	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	4.47	5					1				1		3	2	33.85	30.325	2	9.9624E-05	26911	160511_QHF_FH_JSI11i_1	93.325	50.46			0.96599	0.92657	37.362	3	3	Median	1.443	1.1874	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74755	0.72652	34.397	2	2	Median	NaN	NaN	NaN	0	0	Median	173090000	91782000	81310000	75390000	33888000	41501000	0	0	0	97702000	57893000	39808000	0	0	0	53781	1685	50667	325210;325211;325212;325213;325214;325215	437951;437952;437953;437954;437955;437956	437952			6	
VEMCISK	1	Oxidation (M)	881.39867	0.39867454	2982	Q5VST9	OBSCN	Obscurin	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			58.303	57.909	1	0.034539	52307	160511_QHF_FH_JSI10i_1	47.067	12.175			0.15186	0.17539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15186	0.17539	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29305000	24843000	4461500	0	0	0	29305000	24843000	4461500	0	0	0	0	0	0	53782	2982	50668	325216	437957	437957			1	
VEMENQIYAIPEDIMR	0	Unmodified	1949.9227	0.92268424	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	93.099	92.705	2;3	0.00022079	82387	160511_QHF_FH_JSI9i_1	108.59	86.836			1.2143	1.0138	14	3	1	Median	1.2143	1.0138	NaN	1	1	Median	0.81918	0.95198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2163	1.2443	NaN	1	0	Median	102110000	51059000	51052000	23657000	13939000	9718000	49542000	24079000	25462000	0	0	0	28911000	13040000	15871000	53783	1785	50669	325217;325218;325219	437958;437959;437960	437960			3	
VEMGTSSQNDVDMSWIPQETLNQINK	1	Unmodified	2963.3641	0.36408653	1559	P43307	SSR1	Translocon-associated protein subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	95.15	94.9	2;3	2.2381E-37	86120	160511_QHF_FH_JSI10i_1	169.19	166.65			1.0077	1.0568	10.257	6	1	Median	1.3476	1.1084	NaN	1	0	Median	0.87933	1.0175	10.432	2	0	Median	0.97735	0.94801	10.294	2	1	Median	1.089	1.1476	NaN	1	0	Median	1039800000	536580000	503190000	84742000	29994000	54748000	548370000	304040000	244330000	183280000	98908000	84376000	223370000	103640000	119740000	53784	1559	50670	325220;325221;325222;325223;325224;325225	437961;437962;437963;437964;437965;437966;437967;437968;437969;437970;437971;437972;437973;437974;437975;437976;437977;437978	437973			18	
VEMLDNLLDIEVAYSLLR	0	Unmodified	2105.1078	0.10784248	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	99.389	91.283	2;3	1.0643E-69	54913	160513_QHF_FH_JSI10Kac_6	204.43	169.68			0.97263	1.1398	16.226	3	0	Plateau	0.97263	0.83758	NaN	1	0	Median	1.0083	1.1574	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91046	0.96204	NaN	1	0	Median	243450000	119620000	123820000	52585000	18724000	33862000	111120000	61936000	49189000	0	0	0	79738000	38964000	40775000	53785	939	50671	325226;325227;325228	437979;437980	437980			2	
VEMYSGSDDDDDFNK	1	Unmodified	1735.6519	0.65192493	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.895	40.258	2	9.0072E-40	36233	160511_QHF_FH_JSI10i_1	199.43	198.86			0.6163	0.59265	12.733	4	0	Median	0.67393	0.5514	NaN	1	0	Median	0.53709	0.63295	NaN	1	0	Median	0.56359	0.55491	NaN	1	0	Median	0.71348	0.7214	NaN	1	0	Median	611660000	379470000	232190000	61668000	39108000	22560000	193000000	120850000	72148000	175330000	116730000	58598000	181650000	102770000	78883000	53786	454	50672	325229;325230;325231;325232	437981;437982;437983;437984;437985;437986;437987;437988;437989	437985			9	
VENACTK	1	Unmodified	820.3749	0.37490263	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		2.3111	2.2144	2	0.045207	1098	160511_QHF_FH_JSI11i_1	48.561	23.929			0.36725	0.34815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36725	0.34815	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	65775000	44467000	21308000	0	0	0	0	0	0	65775000	44467000	21308000	0	0	0	53787	1139	50673	325233	437990	437990			1	
VENEDMNK	1	Unmodified	977.41241	0.41241035	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	7.0287	6.5314	2	0.014592	4271	160511_QHF_FH_JSI9i_1	50.127	37.138			1.2077	1.1156	12.778	2	2	Median	1.2336	1.0192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1823	1.2211	NaN	1	1	Median	140570000	65814000	74753000	75912000	37825000	38087000	0	0	0	0	0	0	64654000	27988000	36666000	53788	2603	50674	325234;325235;325236	437991;437992;437993	437993			3	
VENFEAAVHFYGK	1	Unmodified	1509.7252	0.72522871	372	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	11.3	6.6		1							2	1		1	1	68.857	59.619	2;3	0.00042296	31662	160513_QHF_FH_JSI9Kac_6	67.93	55.765			8.0664	7.5427	5.9224	2	0	Median	9.4025	7.8653	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.9202	7.2333	NaN	1	0	Median	243390000	23793000	219600000	133280000	9823400	123460000	0	0	0	0	0	0	110110000	13969000	96144000	53789	372	50675	325237;325238;325239	437994;437995;437996;437997	437996			4	
VENFIQK	1	Unmodified	876.47052	0.47051757	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	27.627	27.084	2	0.011877	22609	160511_QHF_FH_JSI12i_2	70.268	30.725			1.4182	1.6538	57.699	5	2	Median	NaN	NaN	NaN	0	0	Median	1.4182	1.6538	NaN	1	0	Median	1.4742	1.4565	40.336	2	1	Median	0.83564	0.9165	92.275	2	1	Median	757690000	377560000	380130000	0	0	0	239680000	141660000	98020000	340040000	152860000	187180000	177960000	83033000	94932000	53790	1636	50676	325240;325241;325242;325243;325244	437998;437999;438000;438001	437999			4	
VENFIQKQEK	2	Acetyl (K)	1303.6772	0.67721588	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		49.318	38.727	2	0.0068152	22879	160513_QHF_FH_JSI11Kac_4	73.067	36.733			0.030706	0.030462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.030706	0.030462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3120300	3024400	95892	0	0	0	0	0	0	3120300	3024400	95892	0	0	0	53791	1636	50677	325245	438002	438002	1652		1	
VENGEGTIPVESSDIVPTWDGIR	0	Unmodified	2469.2023	0.2023478	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									2	5	2	3	89.05	88.691	2;3	1.5973E-19	80693	160511_QHF_FH_JSI12i_1	151.9	139.93			1.0134	1.0466	22.467	8	3	Median	1.2549	1.024	NaN	1	0	Median	0.73872	0.84568	35.506	3	1	Plateau	0.95858	0.92791	NaN	1	0	Median	1.0713	1.0952	17.06	3	2	Median	292310000	145940000	146370000	21644000	10244000	11400000	98960000	55561000	43399000	76976000	41668000	35308000	94726000	38467000	56259000	53792	1857	50678	325246;325247;325248;325249;325250;325251;325252;325253;325254;325255;325256;325257	438003;438004;438005;438006;438007;438008;438009;438010;438011;438012;438013;438014;438015;438016;438017;438018	438008			16	
VENGQEPVIK	1	Unmodified	1111.5873	0.58733824	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	2	2	1	21.756	18.877	2	2.3114E-05	16253	160511_QHF_FH_JSI12i_1	98.033	74.679			1.0765	1.0896	8.2795	6	0	Median	1.292	1.0703	NaN	1	0	Median	0.85117	1.0081	15.469	2	0	Median	1.1108	1.0844	4.5818	2	0	Median	1.0951	1.1094	NaN	1	0	Median	640310000	287320000	352990000	152170000	58319000	93855000	147670000	72804000	74871000	161990000	74157000	87836000	178470000	82038000	96428000	53793	1857	50679	325258;325259;325260;325261;325262;325263	438019;438020;438021;438022;438023;438024;438025;438026;438027	438021			9	
VENLFNEK	1	Unmodified	991.49746	0.4974606	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	45.536	35.456	2	0.053838	20691	160513_QHF_FH_JSI12Kac_4	43.246	8.4386			0.70006	0.75066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70006	0.75066	NaN	1	0	Median	5438600	2900700	2537900	0	0	0	0	0	0	0	0	0	5438600	2900700	2537900	53794	2087	50680	325264	438028	438028			1	
VENLLLSNQGTIK	1	Unmodified	1427.7984	0.79839365	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	1	3	58.126	57.421	2	0.0025905	52309	160511_QHF_FH_JSI12i_1	66.262	47.656			0.84404	0.94847	52.576	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0565	1.2152	NaN	1	0	Median	0.45324	0.43618	NaN	1	1	Median	0.94756	1.0122	44.245	2	1	Median	94092000	56161000	37931000	0	0	0	26845000	16003000	10843000	25813000	19039000	6773800	41433000	21119000	20314000	53795	229	50681	325265;325266;325267;325268;325269	438029;438030;438031;438032;438033	438031			3	
VENQENVSNLVIEDTELK	1	Unmodified	2072.0273	0.027343548	2169	Q01518	CAP1	Adenylyl cyclase-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	72.132	71.615	2;3	1.3726E-66	65055	160511_QHF_FH_JSI11i_1	291.2	278			0.93004	0.9602	7.4531	8	0	Median	1.2692	1.0434	7.7528	2	0	Median	0.74807	0.87761	3.1106	2	0	Median	0.94922	0.93795	3.2423	2	0	Median	0.92313	0.96483	0.60811	2	0	Median	1179900000	603880000	576000000	266830000	128240000	138590000	280990000	172810000	108180000	290970000	134600000	156370000	341090000	168220000	172870000	53796	2169	50682	325270;325271;325272;325273;325274;325275;325276;325277;325278	438034;438035;438036;438037;438038;438039;438040;438041;438042;438043;438044;438045;438046;438047;438048;438049;438050;438051;438052;438053;438054;438055	438034			22	
VENQYQLLK	1	Unmodified	1133.6081	0.60807369	3203	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	38.851	38.147	2	0.0016279	34530	160511_QHF_FH_JSI12i_1	68.224	44.069			1.0149	1.0171	15.997	5	0	Median	1.0985	0.91549	26.768	2	0	Median	0.87944	1.0171	NaN	1	0	Median	1.0149	1.0052	NaN	1	0	Median	1.1036	1.1303	NaN	1	0	Median	725060000	368590000	356470000	146800000	70351000	76447000	202980000	108450000	94525000	201340000	95855000	105490000	173950000	93936000	80011000	53797	3203	50683	325279;325280;325281;325282;325283	438056;438057;438058;438059;438060;438061	438057			6	
VENSIPAAGETQNVEVAAGPAGK	1	Unmodified	2208.1022	0.10223983	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	51.366	50.694	2	6.9425E-11	46116	160511_QHF_FH_JSI12i_1	113.4	85.068			1.2406	1.2046	20.38	5	5	Median	1.433	1.1758	NaN	1	1	Median	1.1001	1.2173	NaN	1	1	Median	1.2406	1.2046	NaN	1	1	Median	1.2549	1.3058	39.596	2	2	Median	98690000	37773000	60917000	22070000	8476300	13594000	19602000	5807200	13794000	16721000	6433500	10287000	40298000	17056000	23242000	53798	2604	50684	325284;325285;325286;325287;325288	438062;438063;438064;438065;438066	438064			5	
VENTRWDYLTQVEK	1	Unmodified	1779.8792	0.87916317	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		57.13	56.101	3	0.00074627	46942	160511_QHF_FH_JSI10i_3	56.599	39.11			1.4628	1.3897	21.331	3	0	Median	2.1974	1.8087	NaN	1	0	Median	1.0142	1.1857	NaN	1	0	Median	1.4628	1.3897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	604290000	263340000	340950000	67630000	22097000	45533000	247490000	109400000	138080000	289180000	131840000	157330000	0	0	0	53799	4837	50685	325289;325290;325291	438067;438068;438069;438070;438071	438070			5	
VEPADASGTEK	1	Unmodified	1102.5142	0.51423288	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	5.53	4	2			3	2				1	3	4	3	11.652	8.1065	2	8.0088E-08	7543	160511_QHF_FH_JSI11i_1	125.48	104.96			0.9884	1.1149	64.986	11	2	Median	1.3074	1.055	NaN	1	0	Median	0.95289	1.1149	15.017	3	0	Median	1.0541	1.036	110.16	4	1	Median	1.2565	1.3448	20.078	3	1	Plateau	6128200000	3008000000	3120200000	1313700000	511790000	801880000	1529700000	879800000	649920000	1738700000	919210000	819490000	1546100000	697210000	848860000	53800	1645	50686	325292;325293;325294;325295;325296;325297;325298;325299;325300;325301;325302	438072;438073;438074;438075;438076;438077;438078;438079;438080;438081;438082;438083;438084;438085;438086;438087	438073			16	
VEPADASGTEKAFEPATGR	1	Acetyl (K)	1973.933	0.93304923	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13	0						2					1		1	58.491	49.189	2	0.0011325	25974	160513_QHF_FH_JSI12Kac_3	68.809	60.296			1.0329	1.1679	21.606	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1726	1.3607	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90982	1.0024	NaN	1	0	Median	4091200	2175500	1915700	0	0	0	1809500	1142300	667190	0	0	0	2281700	1033200	1248500	53801	1645	50687	325303;325304	438088;438089;438090	438088	1654		3	
VEPAPAANSLGLGLKPGQSMMGSR	1	Acetyl (K);2 Oxidation (M)	2441.2043	0.20427883	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	2	1		By MS/MS	By MS/MS	By MS/MS	13.9	0.927					1	1	4	2			3	2	3	75.489	65.514	3	2.46E-08	34508	160513_QHF_FH_JSI10Kac_4	79.935	72.038			1.0759	1.1759	8.48	7	0	Median	NaN	NaN	NaN	0	0	Median	0.94875	1.1407	7.1985	3	0	Plateau	1.1236	1.1169	NaN	1	0	Median	1.0759	1.1759	10.962	3	0	Median	94087000	44977000	49111000	0	0	0	48518000	23324000	25194000	8173900	4491900	3682000	37396000	17161000	20234000	53802	190	50688	325305;325306;325307;325308;325309;325310;325311;325312	438091;438092;438093;438094;438095;438096;438097;438098;438099	438091	104	77;78	9	
VEPAPAANSLGLGLKPGQSMMGSR	1	Acetyl (K);Oxidation (M)	2425.2094	0.20936421	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	1	1		By MS/MS	By MS/MS		14.7	0.471							1	2			2	1		78.118	67.59	3	5.7031E-13	35903	160513_QHF_FH_JSI11Kac_5	92.29	76.869			0.9841	1.0659	12.01	2	0	Median	NaN	NaN	NaN	0	0	Median	0.98401	1.1604	NaN	1	0	Median	0.98418	0.97912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12626000	6365300	6260600	0	0	0	3760300	2095800	1664500	8865600	4269500	4596100	0	0	0	53803	190	50688	325313;325314;325315	438100;438101;438102	438101	104	77;78	3	
VEPAPAANSLGLGLKPGQSMMGSR	1	Acetyl (K)	2409.2144	0.21444959	190	O14686	KMT2D	Histone-lysine N-methyltransferase 2D	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.442	71.905	3	0.0088192	38043	160513_QHF_FH_JSI11Kac_5	40.682	37.443			1.3998	1.3739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3998	1.3739	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13888000	5815400	8072500	0	0	0	0	0	0	13888000	5815400	8072500	0	0	0	53804	190	50688	325316	438103	438103	104		1	
VEPASEKDPESLR	1	Acetyl (K)	1497.7311	0.73110195	1509	P41162	ETV3	ETS translocation variant 3	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	44.219	35.383	2	0.01039	19626	160513_QHF_FH_JSI12Kac_3	56.783	31.566			1.1682	1.2647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1682	1.2647	NaN	1	0	Median	3808100	1954700	1853500	0	0	0	0	0	0	0	0	0	3808100	1954700	1853500	53805	1509	50689	325317	438104	438104	1539		1	
VEPATPLAVR	0	Unmodified	1051.6026	0.60259438	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2	0		3								1	1		1	40.634	39.505	2	0.046372	33822	160511_QHF_FH_JSI12i_2	36.381	25.671			0.94272	1.0282	5.313	3	0	Median	1.0867	0.9393	NaN	1	0	Median	0.82969	1.0314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94272	1.0282	NaN	1	0	Median	121740000	60201000	61536000	42999000	20415000	22584000	40319000	22494000	17825000	0	0	0	38419000	17291000	21128000	53806	4678	50690	325318;325319;325320	438105	438105			1	
VEPAVDTSR	0	Unmodified	972.48762	0.4876242	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	3									1		1	1	15.184	14.659	2	3.1741E-05	12002	160511_QHF_FH_JSI9i_1	101.64	29.41			1.347	1.4827	19.867	3	0	Plateau	1.3238	1.0866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5391	1.4827	NaN	1	0	Median	1.4986	1.5727	NaN	1	0	Median	1806700000	706000000	1100700000	711810000	259850000	451960000	0	0	0	497120000	193430000	303690000	597800000	252720000	345070000	53807	512	50691	325321;325322;325323	438106;438107	438107			2	
VEPAVIEAQNAVK	1	Unmodified	1366.7456	0.7456298	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								3	2	1	2	47.245	46.474	2;3	6.2442E-07	41877	160511_QHF_FH_JSI11i_1	150.1	127.36			0.85233	0.92527	31.759	6	0	Median	0.94602	0.79154	54.089	2	0	Median	0.59458	0.71473	34.707	2	0	Median	0.95552	0.93716	NaN	1	0	Median	0.93457	0.98428	NaN	1	0	Median	936360000	486140000	450220000	248200000	99814000	148390000	180380000	96518000	83861000	249580000	137920000	111660000	258200000	151890000	106310000	53808	2517	50692	325324;325325;325326;325327;325328;325329;325330;325331	438108;438109;438110;438111;438112;438113;438114;438115;438116;438117;438118;438119;438120;438121;438122;438123;438124	438108			17	
VEPAVSSVVNSIQVLTSK	1	Unmodified	1856.0255	0.025493054	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	1	3	100.95	100.86	3	4.7738E-06	91526	160511_QHF_FH_JSI10i_1	90.422	81.258			0.99092	0.99546	22.759	7	0	Median	1.1508	0.99395	NaN	1	0	Median	0.74777	0.8978	16.065	2	0	Median	0.99092	0.99546	NaN	1	0	Median	1.0335	1.0382	36.964	3	0	Median	454860000	234210000	220650000	58702000	25207000	33496000	137110000	77379000	59734000	68671000	30929000	37742000	190380000	100700000	89680000	53809	5213	50693	325332;325333;325334;325335;325336;325337;325338	438125;438126;438127;438128;438129;438130	438126			2	
VEPFLPGHYEVLDLKPNGK	2	Unmodified	2151.1364	0.13644049	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	3	2	76.605	76.225	3;4	5.3334E-08	65978	160511_QHF_FH_JSI12i_3	104.89	96.102			0.96568	1.3148	19.817	7	1	Linear	0.89088	0.75675	NaN	1	1	Median	0.96568	1.1715	NaN	1	0	Median	1.2387	1.1768	21.592	3	0	Plateau	1.002	1.0838	14.295	2	0	Median	788640000	363460000	425180000	60695000	37450000	23245000	57711000	32803000	24908000	327580000	149160000	178420000	342650000	144050000	198600000	53810	900	50694	325339;325340;325341;325342;325343;325344;325345	438131;438132;438133;438134;438135;438136;438137;438138;438139;438140;438141	438140			11	
VEPGLGADNSVVR	0	Unmodified	1311.6783	0.67827852	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.62	4	5	2			3	3			2	7	4	4	42.438	38.389	2	6.0058E-09	22294	160513_QHF_FH_JSI11Kac_4	118.28	82.983			0.8724	0.95686	19.966	17	5	Median	1.153	0.94958	20.215	2	0	Median	0.85699	0.97343	25.616	7	4	Median	0.92124	0.90382	17.554	4	1	Median	0.89282	0.97656	11.697	4	0	Median	8001200000	4190900000	3810300000	1397600000	687140000	710450000	2393300000	1325500000	1067800000	2257900000	1219200000	1038600000	1952400000	958980000	993460000	53811	1192	50695	325346;325347;325348;325349;325350;325351;325352;325353;325354;325355;325356;325357;325358;325359;325360;325361;325362	438142;438143;438144;438145;438146;438147;438148;438149;438150;438151;438152;438153;438154;438155;438156;438157;438158;438159;438160;438161;438162;438163;438164;438165;438166;438167;438168;438169;438170;438171;438172	438157			31	
VEPHATIAEIK	1	Unmodified	1206.6608	0.66083754	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.04	1	9	7				1	7	1	6	5	7	8	36.104	31.684	2;3	1.9631E-06	26725	160511_QHF_FH_JSI11i_2	109.24	87.004			0.91668	0.96469	44.232	23	8	Median	1.0287	0.84939	63.264	6	2	Median	0.97031	1.1901	48.246	4	3	Median	1.0232	1.0209	40.535	6	3	Median	0.8883	0.97252	15.214	7	0	Median	7022800000	3440600000	3582200000	1474300000	812120000	662140000	1517500000	752330000	765220000	2674200000	1277000000	1397100000	1356800000	599100000	757720000	53812	5141	50696	325363;325364;325365;325366;325367;325368;325369;325370;325371;325372;325373;325374;325375;325376;325377;325378;325379;325380;325381;325382;325383;325384;325385;325386;325387;325388	438173;438174;438175;438176;438177;438178;438179;438180;438181;438182;438183;438184;438185;438186;438187;438188;438189;438190;438191;438192;438193;438194;438195;438196;438197;438198;438199;438200;438201;438202;438203	438191			31	
VEPHATIAEIKNLFTK	2	Acetyl (K)	1852.0094	0.0094490594	5141	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		88.89	79.552	3	0.00045868	44453	160513_QHF_FH_JSI11Kac_6	103.5	93.751			0.19947	0.19094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19947	0.19094	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	47229000	44052000	3176300	0	0	0	0	0	0	47229000	44052000	3176300	0	0	0	53813	5141	50697	325389	438204	438204	3322;3324		1	
VEPITKHIGLVYSGMGPDYR	1	Acetyl (K);Oxidation (M)	2289.1464	0.14635325	1265	P25787	PSMA2	Proteasome subunit alpha type-2	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		75.861	66.525	3	0.00016764	36211	160513_QHF_FH_JSI11Kac_6	80.156	58.956			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14709000	14709000	0	0	0	0	0	0	0	14709000	14709000	0	0	0	0	53814	1265	50698	325390	438205	438205	1165	893	1	
VEPLDFGGTQK	1	Unmodified	1189.5979	0.59790293	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	3	2	1	48.616	48.023	2	2.1957E-05	43531	160511_QHF_FH_JSI12i_1	102.06	92.474			0.87341	0.88369	11.652	6	4	Median	1.0499	0.85221	NaN	1	0	Median	0.78371	0.9145	17.629	2	2	Median	0.88968	0.87984	17.994	2	2	Median	0.86137	0.91635	NaN	1	0	Median	2415100000	1279500000	1135600000	424300000	195330000	228970000	728650000	396170000	332480000	838510000	442360000	396140000	423650000	245620000	178020000	53815	874	50699	325391;325392;325393;325394;325395;325396;325397	438206;438207;438208;438209;438210;438211;438212;438213;438214;438215;438216;438217;438218	438209			13	
VEPLEEAIPLPPTK	1	Unmodified	1531.8498	0.84976052	293	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	79.689	79.165	3	0.038961	72119	160511_QHF_FH_JSI12i_1	30.543	19.273			1.093	1.0788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.093	1.0788	NaN	1	1	Median	12251000	5654100	6596900	0	0	0	0	0	0	0	0	0	12251000	5654100	6596900	53816	293	50700	325398	438219	438219			1	
VEPPKEEQK	2	Unmodified	1082.5608	0.56078914	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	3	3	4	8.8879	8.4738	2;3	0.0016931	5993	160511_QHF_FH_JSI12i_2	50.108	27.421			0.92505	1.0052	11.558	10	1	Median	1.2212	1.0362	4.2624	2	0	Median	0.74983	0.91619	12.928	3	1	Median	0.97391	0.9979	3.5442	2	0	Median	0.90752	1.005	17.605	3	0	Median	1218800000	629620000	589140000	227430000	103190000	124240000	283190000	156240000	126950000	409950000	216130000	193820000	298190000	154060000	144130000	53817	1417	50701	325399;325400;325401;325402;325403;325404;325405;325406;325407;325408;325409;325410	438220;438221;438222;438223;438224;438225;438226;438227;438228;438229;438230	438222			11	
VEPSDNGPLFTELK	1	Unmodified	1544.7722	0.77223848	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	67.232	66.555	2	1.561E-05	60535	160511_QHF_FH_JSI11i_1	153.34	131.35			0.51773	0.55561	13.947	3	0	Plateau	0.66998	0.55561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5163	0.49481	NaN	1	0	Median	0.63745	0.65317	NaN	1	0	Median	403780000	230860000	172930000	119500000	63771000	55734000	0	0	0	156250000	96053000	60194000	128030000	71032000	56999000	53818	4334	50702	325411;325412;325413	438231;438232;438233;438234;438235;438236	438232			6	
VEPSHDASK	1	Unmodified	968.45632	0.45632407	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			1	3	3	2	5.0307	2.0432	2	0.00015459	2487	160511_QHF_FH_JSI12i_1	88.948	41.099			1.0281	1.1404	13.746	9	0	Median	1.393	1.1428	NaN	1	0	Median	1.0006	1.1934	21.452	3	0	Median	1.0504	1.0097	13.485	3	0	Median	0.96691	1.0423	12.719	2	0	Median	3392100000	1570400000	1821700000	456200000	176640000	279560000	1027800000	521170000	506670000	1223100000	541760000	681350000	684950000	330840000	354110000	53819	1192	50703	325414;325415;325416;325417;325418;325419;325420;325421;325422	438237;438238;438239;438240;438241;438242;438243;438244	438238			8	
VEPSHKSK	2	Acetyl (K)	952.49779	0.49779495	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	1	0	0	1		By MS/MS	By MS/MS		14.8	0.433							1	3			2	2		5.9495	-3.6437	2;3	0.0067705	1783	160513_QHF_FH_JSI10Kac_5	52.579	34.139			0.18515	0.17751	106.85	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.3368	1.5694	12.137	2	0	Median	0.25047	0.24766	3.7302	2	0	Median	NaN	NaN	NaN	0	0	Median	111470000	83270000	28202000	0	0	0	15030000	5171100	9858800	96443000	78099000	18344000	0	0	0	53820	1103	50704	325423;325424;325425;325426	438245;438246;438247;438248;438249	438249	956		5	
VEPVGDVVSTRDPVK	1	Unmodified	1595.8519	0.85188578	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	42.703	42.471	3	0.00035233	36280	160511_QHF_FH_JSI12i_3	67.136	46.473			1.8668	1.8901	14.65	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9646	1.9173	2.0205	2	1	Median	1.4507	1.4894	NaN	1	0	Median	288000000	140910000	147090000	0	0	0	0	0	0	189860000	97351000	92511000	98137000	43555000	54582000	53821	1576	50705	325427;325428;325429	438250;438251;438252	438252			3	
VEPYSLTAQQSSLIREDK	1	Unmodified	2063.0535	0.053498719	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	56.723	56.053	3	1.7025E-06	49432	160511_QHF_FH_JSI10i_2	98.035	81.541			0.95965	0.91635	15.235	6	0	Median	0.94257	0.80684	NaN	1	0	Median	0.63711	0.79892	NaN	1	0	Median	1.1519	1.107	2.2774	2	0	Median	0.87218	0.91635	10.594	2	0	Median	689770000	354300000	335470000	96379000	48418000	47961000	104670000	63008000	41664000	242660000	116250000	126410000	246060000	126620000	119440000	53822	4259	50706	325430;325431;325432;325433;325434;325435	438253;438254;438255;438256;438257;438258;438259;438260;438261;438262	438260			10	
VEQATKPSFESGR	1	Unmodified	1434.7103	0.71030693	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.71		6	4					4		3	3	4	4	19.796	16.824	2;3	0.00026893	14146	160511_QHF_FH_JSI11i_3	57.804	44.4			0.90584	0.9358	20.346	14	1	Median	1.1768	1.0179	21.696	3	0	Median	0.92559	1.1522	10.506	3	1	Median	0.94116	0.90912	14.344	4	0	Median	0.73773	0.68211	11.025	4	0	Linear	2784800000	1469100000	1315600000	415100000	167990000	247110000	482990000	245180000	237810000	1362400000	743720000	618700000	524260000	312240000	212020000	53823	1474	50707	325436;325437;325438;325439;325440;325441;325442;325443;325444;325445;325446;325447;325448;325449	438263;438264;438265;438266;438267;438268;438269;438270;438271;438272;438273;438274;438275;438276;438277;438278;438279;438280;438281;438282;438283	438265			21	
VEQATKPSFESGR	1	Acetyl (K)	1476.7209	0.72087161	1474	P38159	RBMX	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			42.624	33.62	2	0.055239	18291	160513_QHF_FH_JSI10Kac_3	40.589	30.066			0.90313	1.0759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90313	1.0759	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1960600	1172800	787810	0	0	0	1960600	1172800	787810	0	0	0	0	0	0	53824	1474	50707	325450	438284	438284			1	
VEQDLAMGTDAEGEK	1	Unmodified	1591.7036	0.70356657	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.46	32.878	2	1.6895E-06	29562	160511_QHF_FH_JSI12i_1	127.02	92.325			0.45571	0.48645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45571	0.48645	NaN	1	1	Median	92968000	53684000	39285000	0	0	0	0	0	0	0	0	0	92968000	53684000	39285000	53825	1962	50708	325451	438285	438285			1	
VEQDLAMGTDAEGEK	1	Oxidation (M)	1607.6985	0.69848119	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	1	0				By MS/MS	12	0					1								1	29.762	21.865	2	0.040331	10774	160513_QHF_FH_JSI12Kac_2	38.402	31.514			1.0267	1.1077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0267	1.1077	NaN	1	0	Median	1564200	817360	746820	0	0	0	0	0	0	0	0	0	1564200	817360	746820	53826	1962	50708	325452	438286	438286			1	
VEQFLTIAR	0	Unmodified	1075.6026	0.60259438	4413	Q9BTC0	DIDO1	Death-inducer obliterator 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	56.639	55.283	2	0.012095	47387	160511_QHF_FH_JSI12i_2	48.048	14.252			0.81544	0.87424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81544	0.87424	NaN	1	0	Median	40353000	20009000	20344000	0	0	0	0	0	0	0	0	0	40353000	20009000	20344000	53827	4413	50709	325453	438287	438287			1	
VEQHVVDGK	1	Unmodified	1009.5193	0.51925868	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.25	1	8					3			2	2	4	4	8.958	7.2515	2;3	3.1114E-05	5782	160511_QHF_FH_JSI11i_2	111.06	70.028			0.84496	0.94996	13.562	11	0	Median	0.97132	0.82684	7.0216	2	0	Median	0.83312	1.0227	2.2011	2	0	Median	0.9944	1.0191	25.259	3	0	Median	0.84043	0.93897	3.223	4	0	Median	2506000000	1251800000	1254200000	471540000	190570000	280960000	534600000	291660000	242940000	843910000	420720000	423190000	655990000	348890000	307100000	53828	5596	50710	325454;325455;325456;325457;325458;325459;325460;325461;325462;325463;325464;325465	438288;438289;438290;438291;438292;438293;438294;438295;438296;438297;438298;438299;438300;438301;438302	438297			15	
VEQIAAIAQELNELDYYDSHNVNTR	0	Unmodified	2904.389	0.38897937	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	100.47	100.41	3	1.8183E-21	88165	160511_QHF_FH_JSI11i_2	131.57	128.99			1.374	1.4224	16.402	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5163	1.5973	NaN	1	0	Median	1.245	1.2666	NaN	1	0	Median	71559000	29268000	42291000	0	0	0	0	0	0	37808000	13150000	24658000	33751000	16118000	17633000	53829	361	50711	325466;325467	438303;438304;438305	438303			3	
VEQIEAGTPGR	0	Unmodified	1155.5884	0.58840088	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.11	4					2	1			1	1	2	3	23.483	19.92	2	4.98E-23	17184	160511_QHF_FH_JSI10i_1	171.85	151.33			0.89031	0.95078	8.5002	7	0	Median	1.2558	1.0313	NaN	1	0	Median	0.79751	0.95078	NaN	1	0	Median	0.86062	0.84338	10.281	2	0	Median	0.89031	0.95839	1.3555	3	0	Median	3227700000	1618000000	1609700000	815890000	344560000	471340000	718750000	378400000	340360000	847980000	452460000	395520000	845100000	442590000	402510000	53830	2778	50712	325468;325469;325470;325471;325472;325473;325474	438306;438307;438308;438309;438310;438311;438312;438313;438314;438315	438311			8	
VEQKYNK	2	Acetyl (K)	949.4869	0.48689592	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	1	0	0	1			By MS/MS	By MS/MS	13.2	0.748					1	2	2					3	2	12.292	4.9274	2	0.014927	5135	160513_QHF_FH_JSI11Kac_4	83.801	27.79			0.36836	0.36403	32.644	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31112	0.29498	12.816	3	0	Median	0.51268	0.5563	3.7719	2	0	Median	346030000	214670000	131360000	0	0	0	0	0	0	245260000	154360000	90896000	100770000	60305000	40462000	53831	2164	50713	325475;325476;325477;325478;325479	438316;438317;438318	438318	2282		3	
VEQLGAEGNVEESQK	1	Unmodified	1615.7689	0.76894402	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	5.65	4				3	3				1	3	3	3	30.71	25.329	2	2.4625E-30	22398	160511_QHF_FH_JSI12i_1	226.04	168.08			0.99279	1.0547	13.233	10	0	Median	1.1905	0.9567	NaN	1	0	Median	0.92873	1.0804	24.338	3	0	Median	1.1177	1.0841	3.8396	3	0	Median	0.91811	0.98352	7.7725	3	0	Median	1405100000	708120000	696950000	258440000	103320000	155110000	375010000	211580000	163430000	344910000	174770000	170140000	426710000	218440000	208270000	53832	5562	50714	325480;325481;325482;325483;325484;325485;325486;325487;325488;325489	438319;438320;438321;438322;438323;438324;438325;438326;438327;438328;438329;438330;438331;438332;438333;438334;438335;438336;438337;438338;438339;438340	438325			22	
VEQLQQEYTEMK	1	Unmodified	1524.713	0.71300904	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	41.365	40.72	2	9.2988E-10	36990	160511_QHF_FH_JSI12i_1	120.77	96.92			0.96795	0.78956	47.566	4	3	Linear	0.43953	0.37337	NaN	1	1	Median	0.8763	1.0171	NaN	1	1	Median	1.0409	1.0037	NaN	1	0	Median	0.60447	0.62108	NaN	1	1	Median	180830000	85649000	95184000	29170000	16239000	12931000	71230000	27747000	43483000	46125000	17775000	28350000	34308000	23888000	10420000	53833	2525	50715	325490;325491;325492;325493;325494	438341;438342;438343;438344;438345	438343			5	
VEQMFQILLDPEEK	1	Unmodified	1717.8597	0.85967328	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			98.9	98.894	2	0.0043461	89702	160511_QHF_FH_JSI10i_1	55.196	38.17			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53834	4704	50716	325495	438346	438346			1	
VEQNAAPSHTK	1	Unmodified	1180.5836	0.58364985	2110	P82912	MRPS11	28S ribosomal protein S11, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.7	5.97	1	5					4				2	3	5	5.3704	2.0076	2;3	4.5129E-07	2683	160511_QHF_FH_JSI11i_2	116.55	81.251			1.0462	1.1469	19.165	7	4	Median	NaN	NaN	NaN	0	0	Median	0.73081	0.86121	NaN	1	1	Median	0.95989	1.1627	22.114	3	1	Plateau	0.91379	1.0051	19.863	3	2	Plateau	606030000	312090000	293940000	0	0	0	3915100	2114500	1800600	316380000	157890000	158480000	285730000	152080000	133660000	53835	2110	50717	325496;325497;325498;325499;325500;325501;325502;325503;325504;325505	438347;438348;438349;438350;438351;438352;438353;438354;438355;438356	438352			10	
VEQSAER	0	Unmodified	817.393	0.39299553	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0		By MS/MS			1	0	1										1			0.054682	-0.18601	2	0.035052	11	160511_QHF_FH_JSI10i_1	50.966	7.9657			1.1197	1.3099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1197	1.3099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47560000	24395000	23165000	0	0	0	47560000	24395000	23165000	0	0	0	0	0	0	53836	2046;2296	50718	325506	438357	438357			1	
VEQSLLR	0	Unmodified	843.48142	0.48141661	86	D6RIA3	LOC285556		yes	yes	0	0	0	0				By MS/MS	2	0		1											1	34.888	33.551	2	0.019993	28512	160511_QHF_FH_JSI12i_2	57.463	0			1.8064	1.985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8064	1.985	NaN	1	0	Median	1172900000	507770000	665090000	0	0	0	0	0	0	0	0	0	1172900000	507770000	665090000	53837	86	50719	325507	438358	438358			1	
VEQTETPEMMEAR	0	Unmodified	1549.6752	0.67524333	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.139	33.536	2	1.2856E-15	30040	160511_QHF_FH_JSI11i_1	164.9	154.38			0.96845	0.99219	3.4714	4	0	Median	1.2137	0.98329	NaN	1	0	Median	0.85915	1.0012	NaN	1	0	Median	1.0229	1.006	NaN	1	0	Median	0.91691	0.93255	NaN	1	0	Median	661980000	330960000	331010000	181180000	83067000	98111000	155460000	82806000	72654000	192770000	94358000	98408000	132570000	70732000	61840000	53838	1778	50720	325508;325509;325510;325511	438359;438360;438361;438362;438363;438364;438365;438366	438360			8	
VEQTETPEMMEAR	0	Oxidation (M)	1565.6702	0.67015795	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	2									1			1	34.116	33.534	2	2.0738E-07	29483	160511_QHF_FH_JSI9i_1	100.93	88.872			1.0186	1.0444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0186	1.0444	NaN	1	0	Median	33923000	17386000	16537000	0	0	0	0	0	0	0	0	0	33923000	17386000	16537000	53839	1778	50720	325512;325513	438367;438368;438369	438369		1464;1465	3	
VEQVLSLEPQHELK	1	Unmodified	1647.8832	0.88318591	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.575	3	7	1							2	3	3	3	53.597	52.71	2;3	1.5678E-11	45417	160511_QHF_FH_JSI11i_2	195.68	161.8			1.2111	0.79495	28.996	11	3	Linear	0.85572	0.71652	62.58	2	1	Median	1.0003	1.2304	29.227	3	1	Plateau	1.0298	0.74643	21.449	3	1	Plateau	0.74431	0.79495	19.814	3	0	Median	1642100000	898260000	743880000	278380000	137950000	140420000	408720000	242980000	165740000	620090000	344240000	275850000	334960000	173090000	161870000	53840	671	50721	325514;325515;325516;325517;325518;325519;325520;325521;325522;325523;325524	438370;438371;438372;438373;438374;438375;438376;438377;438378;438379;438380;438381;438382;438383;438384;438385;438386;438387;438388;438389	438384			20	
VEQVLSLEPQHELKFR	1	Acetyl (K)	1993.0633	0.063275544	671	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.012	67.688	3	0.00047394	36977	160513_QHF_FH_JSI11Kac_6	99.044	81.763			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34310000	34310000	0	0	0	0	0	0	0	34310000	34310000	0	0	0	0	53841	671	50722	325525	438390	438390	332		1	
VERADGYEPPVQESV	0	Unmodified	1673.7897	0.78967946	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	44.055	43.391	2	9.0151E-29	38624	160511_QHF_FH_JSI9i_1	184.98	172.77			1.0444	1.1974	8.4536	4	0	Linear	1.4485	1.1417	NaN	1	0	Median	1.1056	1.2941	NaN	1	0	Median	1.3052	1.2558	NaN	1	0	Median	1.0067	1.0778	NaN	1	0	Median	5305500000	2475300000	2830200000	1092900000	457420000	635450000	1538200000	702000000	836190000	1131300000	514180000	617080000	1543200000	801700000	741480000	53842	1948	50723	325526;325527;325528;325529	438391;438392;438393;438394;438395;438396;438397;438398;438399	438398			9	
VERDILK	1	Unmodified	871.51272	0.51271674	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	12.168	12.209	3	0.032922	9381	160511_QHF_FH_JSI12i_3	37.558	1.3729			1.0903	1.0764	49.144	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5808	1.5237	NaN	1	0	Median	0.75207	0.76044	NaN	1	0	Median	408140000	170360000	237780000	0	0	0	0	0	0	175560000	61509000	114050000	232590000	108860000	123730000	53843	1527	50724	325530;325531	438400	438400			1	
VEREIDGGLETLR	0	Unmodified	1485.7787	0.77872084	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		40.679	40.196	3	0.00013627	35271	160511_QHF_FH_JSI11i_3	72.417	59.791			1.4702	1.5628	43.815	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7452	2.1304	NaN	1	0	Median	1.2386	1.1465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	152040000	66255000	85781000	0	0	0	65841000	22477000	43364000	86196000	43779000	42417000	0	0	0	53844	1473	50725	325532;325533	438401;438402	438401			2	
VESAQSEQK	1	Unmodified	1004.4775	0.47745344	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	5.78	4				2	3				1	3	3	2	4.8916	0.71643	2	3.7478E-11	2375	160511_QHF_FH_JSI11i_1	155.84	86.246			0.98977	0.97583	19.659	9	0	Median	1.1939	0.97583	NaN	1	0	Median	0.98977	1.1677	18.169	3	0	Median	1.2663	1.222	21.827	3	0	Median	0.76527	0.81892	16.191	2	0	Median	1755800000	863610000	892160000	184800000	87233000	97571000	549470000	253960000	295510000	522350000	230890000	291460000	499140000	291530000	207620000	53845	2284	50726	325534;325535;325536;325537;325538;325539;325540;325541;325542	438403;438404;438405;438406;438407;438408;438409;438410;438411;438412	438403			10	
VESEIKVPDVELK	2	Unmodified	1483.8134	0.81337501	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	61.322	60.008	3	0.062279	51560	160511_QHF_FH_JSI12i_2	24.964	19.787			1.1939	1.3013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1939	1.3013	NaN	1	0	Median	14627000	5042200	9584700	0	0	0	0	0	0	0	0	0	14627000	5042200	9584700	53846	2286	50727	325543	438413	438413			1	
VESEQQYFEIEK	1	Unmodified	1527.7093	0.70930387	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	51.149	50.475	2	2.2405E-05	45571	160511_QHF_FH_JSI11i_1	132.17	117.96			0.88227	0.8489	6.1466	4	0	Median	1.0194	0.84267	NaN	1	0	Median	0.68708	0.80337	NaN	1	0	Median	0.87864	0.85518	NaN	1	0	Median	0.88591	0.93106	NaN	1	0	Median	592030000	323060000	268970000	120420000	65141000	55281000	156590000	90179000	66413000	169430000	95641000	73792000	145580000	72096000	73484000	53847	1016	50728	325544;325545;325546;325547	438414;438415;438416;438417;438418;438419	438415			6	
VESESYRK	1	Unmodified	996.48762	0.4876242	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.34		2	4					1		1	1	4	1	5.796	4.084	2;3	0.001555	3360	160511_QHF_FH_JSI11i_3	55.37	35.608			1.0165	0.98742	14.424	6	0	Median	1.5596	1.3244	NaN	1	0	Median	0.78976	0.96268	NaN	1	0	Median	1.0117	0.92922	7.2291	3	0	Median	1.0214	1.0536	NaN	1	0	Median	681440000	326640000	354810000	51629000	20330000	31299000	54111000	35561000	18549000	439710000	216420000	223290000	136000000	54327000	81668000	53848	5317	50729	325548;325549;325550;325551;325552;325553;325554	438420;438421;438422;438423;438424;438425	438422			6	
VESGGPGTSAASAR	0	Unmodified	1245.5949	0.59494282	4434	Q9BU76	MMTAG2	Multiple myeloma tumor-associated protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.5608	9.1953	2	0.0004623	7156	160511_QHF_FH_JSI12i_1	78.342	67.177			1.2692	1.312	10.661	4	0	Median	1.8838	1.5575	NaN	1	0	Median	1.1282	1.3144	NaN	1	0	Median	1.2891	1.2091	NaN	1	0	Median	1.2495	1.3096	NaN	1	0	Median	256630000	108930000	147700000	53579000	20979000	32600000	68881000	28880000	40001000	71393000	32568000	38825000	62777000	26505000	36272000	53849	4434	50730	325555;325556;325557;325558	438426;438427;438428;438429;438430;438431;438432	438429			7	
VESLDVDSEAK	1	Unmodified	1190.5667	0.56666238	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	4.27	1				3	2				1	1	1	3	35.506	28.656	2	8.8797E-06	25085	160511_QHF_FH_JSI9i_1	125.75	105.96			0.94128	0.96492	34.996	4	1	Median	0.66325	0.54335	NaN	1	1	Median	1.0663	1.2416	NaN	1	0	Median	0.98687	0.96249	NaN	1	0	Median	0.89779	0.96736	NaN	1	0	Median	386210000	238050000	148150000	376810000	233740000	143060000	2630500	1011200	1619300	2585100	1361400	1223800	4186900	1941000	2245900	53850	1649	50731	325559;325560;325561;325562;325563;325564	438433;438434;438435;438436;438437;438438;438439	438436			7	
VESLEQEAANER	0	Unmodified	1373.6423	0.64228694	823	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.315	27.047	2	0.032471	23529	160511_QHF_FH_JSI9i_1	54.784	35.469			0.1774	0.14377	NaN	1	0	Median	0.1774	0.14377	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	174650000	149320000	25324000	174650000	149320000	25324000	0	0	0	0	0	0	0	0	0	53851	823	50732	325565	438440	438440			0	
VESLESLYFTPIPAR	0	Unmodified	1720.9036	0.903587	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	6	2	2	89.86	89.417	2;3	8.8028E-30	78658	160511_QHF_FH_JSI11i_2	189.13	158.52			0.87329	0.89369	11.474	11	4	Median	1.0894	0.94223	4.6887	2	0	Median	0.74617	0.87245	17.112	5	4	Median	0.88782	0.88672	1.1069	2	0	Median	0.84396	0.90405	5.4338	2	0	Median	294700000	155990000	138720000	51415000	23645000	27770000	117940000	67166000	50772000	79188000	41256000	37932000	46162000	23918000	22244000	53852	2587	50733	325566;325567;325568;325569;325570;325571;325572;325573;325574;325575;325576;325577	438441;438442;438443;438444;438445;438446;438447;438448;438449;438450;438451;438452;438453;438454;438455;438456;438457;438458;438459;438460	438454			20	
VESLQEEIAFLK	1	Unmodified	1404.75	0.75004648	913	P08670	VIM	Vimentin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	83.871	83.092	2	0.0026065	73938	160511_QHF_FH_JSI10i_2	69.786	21.962			0.99204	1.0317	16.546	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0662	1.3161	NaN	1	1	Median	0.99204	1.0317	NaN	1	0	Median	0.86637	0.95974	NaN	1	0	Median	93295000	45989000	47305000	0	0	0	28710000	12156000	16554000	36387000	19818000	16569000	28198000	14015000	14182000	53853	913	50734	325578;325579;325580	438461;438462;438463	438463			2	
VESLSQVEVILQHSAADIAR	0	Unmodified	2164.1488	0.14879609	883	P07942	LAMB1	Laminin subunit beta-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	99.878	99.733	3	0.00015878	87417	160511_QHF_FH_JSI11i_2	55.007	42.704			1.4546	1.4742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4546	1.4742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19108000	9527500	9580300	0	0	0	0	0	0	19108000	9527500	9580300	0	0	0	53854	883	50735	325581;325582;325583	438464;438465;438466	438466			3	
VESLWPIFR	0	Unmodified	1145.6233	0.62332982	1513	P41223	BUD31	Protein BUD31 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	90.432	90.01	2	0.0021594	80010	160511_QHF_FH_JSI10i_2	75.109	54.806			1.0658	1.0861	12.651	5	2	Median	NaN	NaN	NaN	0	0	Median	1.031	1.2389	18.623	2	1	Median	1.1013	1.0928	2.7994	2	1	Median	0.98409	1.0254	NaN	1	0	Median	139110000	69221000	69886000	0	0	0	33496000	18735000	14760000	65204000	30038000	35166000	40408000	20448000	19960000	53855	1513	50736	325584;325585;325586;325587;325588	438467;438468;438469;438470;438471;438472;438473	438471			7	
VESPGTYQQDPWAMTDEEK	1	Unmodified	2209.9474	0.94737867	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	60.346	59.701	2	4.1102E-43	54174	160511_QHF_FH_JSI11i_1	163.99	153.05			1.2935	1.29	14.828	4	0	Median	1.8793	1.5995	NaN	1	0	Median	1.0049	1.1443	NaN	1	0	Median	1.2727	1.2128	NaN	1	0	Median	1.3147	1.3722	NaN	1	0	Median	135750000	62355000	73397000	32450000	11576000	20874000	34851000	16928000	17923000	30182000	18318000	11864000	38270000	15535000	22735000	53856	102	50737	325589;325590;325591;325592;325593;325594	438474;438475;438476;438477;438478;438479;438480;438481;438482;438483	438477			10	
VESQSSFGTLR	0	Unmodified	1209.599	0.59896556	417	O60443	DFNA5	Non-syndromic hearing impairment protein 5	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	30.822	29.644	2	0.0018604	25064	160511_QHF_FH_JSI12i_2	71.349	46.426			1.2726	1.2273	23.27	2	0	Median	1.2406	1.0411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3055	1.4468	NaN	1	0	Median	178710000	77547000	101160000	74876000	29310000	45566000	0	0	0	0	0	0	103830000	48237000	55593000	53857	417	50738	325595;325596	438484	438484			1	
VESTVIPESTIMR	0	Unmodified	1460.7545	0.75447993	4335	Q99996	AKAP9	A-kinase anchor protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	58.371	57.713	2	0.006033	52471	160511_QHF_FH_JSI12i_1	74.944	52.415			0.69924	0.71498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69924	0.71498	NaN	1	1	Median	26142000	15977000	10165000	0	0	0	0	0	0	0	0	0	26142000	15977000	10165000	53858	4335	50739	325597;325598;325599	438485;438486;438487	438485			3	
VESVTAGSPLTNQFYLAAPR	0	Unmodified	2120.0902	0.090218576	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	2	2									1	3		82.504	82.129	2	4.9277E-14	74509	160511_QHF_FH_JSI10i_1	189.3	161.09			0.93234	1.0408	35.912	3	2	Median	NaN	NaN	NaN	0	0	Median	0.93234	1.0408	NaN	1	0	Median	0.91296	0.88758	49.095	2	2	Median	NaN	NaN	NaN	0	0	Median	45445000	23376000	22069000	0	0	0	20113000	9864700	10248000	25332000	13511000	11821000	0	0	0	53859	3073	50740	325600;325601;325602;325603	438488;438489;438490;438491	438489			4	
VETDAAQAAVQSAFAVLLTQLIK	1	Unmodified	2386.3108	0.31077604	2484	Q14004	CDK13	Cyclin-dependent kinase 13	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	104.35	104.27	3	1.2186E-08	91968	160511_QHF_FH_JSI11i_2	99.366	85.057			1.453	1.3821	41.363	5	2	Median	1.9474	1.8014	NaN	1	0	Median	0.5429	0.63065	NaN	1	0	Median	1.4088	1.3472	3.6213	2	2	Median	1.5748	1.6354	NaN	1	0	Median	43065000	20924000	22141000	3525300	1326400	2198900	5670700	3900700	1770000	30197000	13332000	16866000	3671700	2365100	1306600	53860	2484	50741	325604;325605;325606;325607;325608	438492;438493;438494;438495	438493			4	
VETDHIVAAVGLEPNVELAK	1	Unmodified	2103.1212	0.12118435	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.599	2	5	1							2	3	2	1	76.733	76.071	3	2.4813E-09	65675	160511_QHF_FH_JSI12i_2	111.66	96.405			1.0372	1.0999	32.666	7	3	Median	0.80107	0.68018	10.015	2	2	Median	1.1659	1.3953	16.104	2	0	Median	1.2363	1.2065	13.083	2	1	Median	0.81661	0.93967	NaN	1	0	Median	647930000	340860000	307060000	175250000	104390000	70862000	163230000	73420000	89805000	176390000	90563000	85830000	133060000	72496000	60566000	53861	736	50742	325609;325610;325611;325612;325613;325614;325615;325616	438496;438497;438498;438499;438500;438501;438502;438503;438504	438498			8	
VETELQGVCDTVLGLLDSHLIK	1	Unmodified	2438.2727	0.27267597	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		102.34	102.23	3	1.2475E-24	90017	160511_QHF_FH_JSI11i_2	176.54	162.66			0.9707	1.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9707	1.0006	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	577640000	320060000	257580000	0	0	0	0	0	0	577640000	320060000	257580000	0	0	0	53862	1385	50743	325617	438505	438505			1	
VETFSGVYK	1	Unmodified	1028.5179	0.51786169	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.56	6.3	4	1	1			2	3	4	1	5	4	4	3	42.839	36.323	2	9.3262E-06	20982	160513_QHF_FH_JSI12Kac_4	131.06	51.465			1.1247	1.1074	12.487	16	0	Median	1.2579	1.048	11.541	5	0	Median	0.93249	1.2843	8.7293	4	0	Linear	1.1633	1.1436	17.969	4	0	Median	1.0837	1.1589	12.518	3	0	Median	8522800000	3629500000	4893300000	2476300000	1025400000	1450900000	2344600000	1014200000	1330400000	2131100000	929590000	1201500000	1570800000	660260000	910550000	53863	1979	50744	325618;325619;325620;325621;325622;325623;325624;325625;325626;325627;325628;325629;325630;325631;325632;325633	438506;438507;438508;438509;438510;438511;438512;438513;438514;438515;438516;438517;438518;438519;438520;438521;438522;438523;438524;438525	438519			20	
VETFSGVYKK	2	Unmodified	1156.6128	0.61282471	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.9		6	5					1	3	4	3	4	4	30.736	27.618	2;3	3.7174E-05	22933	160511_QHF_FH_JSI12i_3	95.502	66.353			0.96301	0.98555	24.012	14	3	Median	1.1257	0.96058	25.473	4	0	Median	0.85176	1.0276	29.564	3	2	Median	0.64265	0.60674	24.538	3	1	Plateau	1.0291	1.1013	12.406	4	0	Median	2360300000	1210800000	1149600000	202160000	101750000	100410000	194300000	121140000	73161000	527670000	261380000	266290000	1436200000	726500000	709710000	53864	1979	50745	325634;325635;325636;325637;325638;325639;325640;325641;325642;325643;325644;325645;325646;325647;325648	438526;438527;438528;438529;438530;438531;438532;438533;438534;438535	438534			10	
VETFSGVYKK	2	Acetyl (K)	1198.6234	0.6233894	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.433							3	1			1	2	1	52.3	41.695	2	0.0032517	24292	160513_QHF_FH_JSI11Kac_4	90.15	65.375			0.36622	0.37768	79.456	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1722	1.3973	NaN	1	0	Median	0.26686	0.26143	1.5071	2	0	Median	0.50189	0.53984	NaN	1	0	Median	134570000	98244000	36331000	0	0	0	22492000	10005000	12486000	96197000	75703000	20494000	15886000	12536000	3350400	53865	1979	50745	325649;325650;325651;325652	438536;438537;438538;438539;438540	438539	1998;2000		5	
VETGSEPGDTEPLELGGPGAEPEQK	1	Unmodified	2522.166	0.16602187	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	57.009	56.482	3	0.0036689	50972	160511_QHF_FH_JSI10i_1	29.423	26.184			1.0328	1.1347	22.117	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83884	0.97042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2716	1.3268	NaN	1	1	Median	77186000	30437000	46749000	0	0	0	38857000	15456000	23401000	0	0	0	38329000	14981000	23347000	53866	5633	50746	325653;325654	438541;438542	438542			2	
VETGVLK	1	Unmodified	744.43815	0.43815481	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.72	6.21	4	1	3			3	4	1	2	6	2	5	5	21.706	16.355	2	0.010853	15928	160511_QHF_FH_JSI11i_1	73.039	39.3			0.94545	0.88544	15.332	18	0	Median	1.0347	0.85565	8.0958	6	0	Median	0.68011	0.81412	3.4012	2	0	Median	0.97009	0.95857	12.511	5	0	Median	0.87949	0.91084	21.795	5	0	Median	14868000000	7152700000	7715600000	4527300000	2042300000	2485000000	3578600000	2023300000	1555400000	3673600000	1554400000	2119300000	3088700000	1532800000	1555900000	53867	2072	50747	325655;325656;325657;325658;325659;325660;325661;325662;325663;325664;325665;325666;325667;325668;325669;325670;325671;325672	438543;438544;438545;438546;438547;438548;438549;438550;438551;438552;438553;438554;438555;438556;438557;438558;438559;438560;438561	438544			19	
VETGVLKPGMVVTFAPVNVTTEVK	2	Oxidation (M)	2530.3717	0.37166174	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.734	6	11	24							5	9	10	17	84.518	84.038	2;3;4	4.7184E-51	72282	160511_QHF_FH_JSI12i_3	201.63	198.91			1.0413	1.0452	17.629	39	4	Median	1.1852	1.0081	4.8485	5	0	Median	0.96183	1.0882	25.091	9	1	Median	1.0638	1.0124	10.639	10	0	Median	0.9639	1.0892	15.984	15	3	Plateau	12992000000	6002600000	6989700000	942830000	446410000	496420000	1609300000	836170000	773110000	3657800000	1647000000	2010800000	6782400000	3073100000	3709300000	53868	2072	50748	325673;325674;325675;325676;325677;325678;325679;325680;325681;325682;325683;325684;325685;325686;325687;325688;325689;325690;325691;325692;325693;325694;325695;325696;325697;325698;325699;325700;325701;325702;325703;325704;325705;325706;325707;325708;325709;325710;325711;325712;325713	438562;438563;438564;438565;438566;438567;438568;438569;438570;438571;438572;438573;438574;438575;438576;438577;438578;438579;438580;438581;438582;438583;438584;438585;438586;438587;438588;438589;438590;438591;438592;438593;438594;438595;438596;438597;438598;438599;438600;438601;438602;438603;438604;438605;438606;438607;438608;438609;438610;438611;438612;438613;438614;438615;438616;438617;438618;438619;438620;438621;438622;438623;438624;438625;438626;438627;438628;438629;438630;438631;438632;438633;438634;438635;438636;438637;438638;438639;438640;438641;438642;438643	438620		1736	82	
VETGVLKPGMVVTFAPVNVTTEVK	2	Unmodified	2514.3767	0.37674711	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.23	2.52	8	17	110						5	9	11	42	78	101.47	101.04	2;3;4	8.2564E-106	81401	160511_QHF_FH_JSI11i_3	288.41	271.47			0.95028	0.96958	19.098	129	34	Median	1.2027	1.0107	10.661	8	2	Median	0.86864	1.0291	16.825	11	2	Median	0.92667	0.88493	25.461	36	12	Median	0.96105	0.98522	15.026	74	18	Median	61131000000	31067000000	30064000000	8215600000	3681500000	4534100000	7934200000	4406000000	3528100000	22473000000	10408000000	12065000000	22508000000	12571000000	9936900000	53869	2072	50748	325714;325715;325716;325717;325718;325719;325720;325721;325722;325723;325724;325725;325726;325727;325728;325729;325730;325731;325732;325733;325734;325735;325736;325737;325738;325739;325740;325741;325742;325743;325744;325745;325746;325747;325748;325749;325750;325751;325752;325753;325754;325755;325756;325757;325758;325759;325760;325761;325762;325763;325764;325765;325766;325767;325768;325769;325770;325771;325772;325773;325774;325775;325776;325777;325778;325779;325780;325781;325782;325783;325784;325785;325786;325787;325788;325789;325790;325791;325792;325793;325794;325795;325796;325797;325798;325799;325800;325801;325802;325803;325804;325805;325806;325807;325808;325809;325810;325811;325812;325813;325814;325815;325816;325817;325818;325819;325820;325821;325822;325823;325824;325825;325826;325827;325828;325829;325830;325831;325832;325833;325834;325835;325836;325837;325838;325839;325840;325841;325842;325843;325844;325845;325846;325847;325848;325849;325850;325851;325852;325853	438644;438645;438646;438647;438648;438649;438650;438651;438652;438653;438654;438655;438656;438657;438658;438659;438660;438661;438662;438663;438664;438665;438666;438667;438668;438669;438670;438671;438672;438673;438674;438675;438676;438677;438678;438679;438680;438681;438682;438683;438684;438685;438686;438687;438688;438689;438690;438691;438692;438693;438694;438695;438696;438697;438698;438699;438700;438701;438702;438703;438704;438705;438706;438707;438708;438709;438710;438711;438712;438713;438714;438715;438716;438717;438718;438719;438720;438721;438722;438723;438724;438725;438726;438727;438728;438729;438730;438731;438732;438733;438734;438735;438736;438737;438738;438739;438740;438741;438742;438743;438744;438745;438746;438747;438748;438749;438750;438751;438752;438753;438754;438755;438756;438757;438758;438759;438760;438761;438762;438763;438764;438765;438766;438767;438768;438769;438770;438771;438772;438773;438774;438775;438776;438777;438778;438779;438780;438781;438782;438783;438784;438785;438786;438787;438788;438789;438790;438791;438792;438793;438794;438795;438796;438797;438798;438799;438800;438801;438802;438803;438804;438805;438806;438807;438808;438809;438810;438811;438812;438813;438814;438815;438816;438817;438818;438819;438820;438821;438822;438823;438824;438825;438826;438827;438828;438829;438830;438831;438832;438833;438834;438835;438836;438837;438838;438839;438840;438841;438842;438843;438844;438845;438846;438847;438848;438849;438850;438851;438852;438853;438854;438855;438856;438857;438858;438859;438860;438861;438862;438863;438864;438865;438866;438867;438868;438869;438870;438871;438872;438873;438874;438875;438876;438877;438878;438879;438880;438881;438882;438883;438884;438885;438886;438887;438888;438889;438890;438891;438892;438893;438894;438895;438896;438897	438646			244	
VETPLEEAIK	1	Unmodified	1127.6074	0.60740498	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	55.163	54.504	2	0.0047585	49473	160511_QHF_FH_JSI11i_1	64.654	44.029			0.83468	0.78	17.015	3	3	Plateau	0.75414	0.60638	NaN	1	1	Median	0.66733	0.78	NaN	1	1	Median	0.86422	0.83854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	744430000	492830000	251600000	259280000	172530000	86752000	195620000	122220000	73405000	289520000	198080000	91443000	0	0	0	53870	4518	50749	325854;325855;325856;325857	438898;438899;438900;438901	438898			4	
VETPSHPGGVSEEFWER	0	Unmodified	1941.8857	0.88570511	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.173	53.056	3	6.6535E-07	46976	160511_QHF_FH_JSI11i_3	117.67	100.38			1.0642	1.0319	0.2226	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1291	1.0302	NaN	1	0	Median	1.0031	1.0335	NaN	1	0	Median	228110000	111070000	117040000	0	0	0	0	0	0	91925000	41178000	50747000	136190000	69896000	66290000	53871	3861	50750	325858;325859	438902;438903;438904;438905	438902			4	
VETPVLPPVLVPR	0	Unmodified	1414.8548	0.85478632	2709;2124	Q15796;O15198;P84022	SMAD2;SMAD9;SMAD3	Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9;Mothers against decapentaplegic homolog 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	2	3	2	88.066	87.531	2;3	1.8986E-05	76989	160511_QHF_FH_JSI11i_2	121.73	111.21			0.96736	1.0026	12.709	9	0	Median	1.2336	1.0334	13.572	2	0	Median	0.7828	0.93556	11.409	2	0	Median	1.0267	1.0099	16.123	3	0	Plateau	0.97502	1.0287	3.6362	2	0	Median	298060000	151310000	146750000	53521000	22981000	30540000	73547000	40657000	32890000	99825000	50326000	49499000	71163000	37342000	33821000	53872	2709;2124	50751	325860;325861;325862;325863;325864;325865;325866;325867;325868	438906;438907;438908;438909;438910;438911;438912;438913;438914;438915;438916;438917;438918;438919;438920	438916			14	
VETSDEEIHDLHQR	0	Unmodified	1706.786	0.78599106	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		21.355	21.032	3	0.0020755	17387	160511_QHF_FH_JSI11i_2	67.275	53.559			0.8433	0.8812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8433	0.8812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39668000	22414000	17254000	0	0	0	0	0	0	39668000	22414000	17254000	0	0	0	53873	862	50752	325869	438921	438921			1	
VETTEDLVAK	1	Unmodified	1103.571	0.57101948	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	5.73	4				2	4				2	3	3	2	33.494	27.063	2	1.7205E-06	6071	160513_QHF_FH_JSI9Kac_3	107.15	68.132			1.0007	1.0956	12.804	10	1	Median	1.3741	1.0829	4.7225	2	1	Median	0.95699	1.119	17.528	3	0	Median	1.1572	1.1101	20.13	3	0	Median	0.97566	1.053	3.7512	2	0	Median	4155500000	2166400000	1989000000	962130000	405180000	556950000	1119800000	699580000	420250000	1005900000	472940000	533010000	1067600000	588740000	478840000	53874	1473	50753	325870;325871;325872;325873;325874;325875;325876;325877;325878;325879	438922;438923;438924;438925;438926;438927;438928;438929;438930;438931	438928			10	
VETVSQPSESPK	1	Unmodified	1286.6354	0.63541065	4290	Q99590	SCAF11	Protein SCAF11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	18.718	16.82	2	7.9606E-05	14243	160511_QHF_FH_JSI10i_1	93.556	81.33			0.8985	0.87762	12.061	5	1	Median	1.0107	0.8275	NaN	1	0	Median	0.84927	0.98439	NaN	1	0	Median	0.84399	0.81694	10.133	2	1	Median	1.0044	1.017	NaN	1	0	Median	454470000	253260000	201210000	123880000	64888000	58989000	101380000	54880000	46495000	97623000	48655000	48968000	131600000	84836000	46762000	53875	4290	50754	325880;325881;325882;325883;325884	438932;438933;438934;438935	438934			4	
VETYLNENLRK	1	Unmodified	1377.7252	0.72522871	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	1	3	4	33.676	33.115	2;3	9.1106E-06	27996	160511_QHF_FH_JSI12i_3	80.014	70.732			1.0775	1.0166	37.92	9	3	Median	1.3155	1.1179	28.539	2	1	Median	0.77535	0.95832	NaN	1	0	Median	1.2137	1.197	23.098	2	0	Median	1.1693	1.2386	57.123	4	2	Median	1214400000	588480000	625960000	192100000	86770000	105330000	182560000	109130000	73438000	415790000	186800000	228990000	423980000	205790000	218190000	53876	5479	50755	325885;325886;325887;325888;325889;325890;325891;325892;325893;325894	438936;438937;438938;438939;438940;438941;438942;438943;438944;438945	438943			10	
VETYNDESR	0	Unmodified	1111.4782	0.47818172	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3988	9.035	2	0.0031345	6844	160511_QHF_FH_JSI10i_1	61.65	58.242			1.224	1.3095	14.55	3	0	Plateau	1.224	1.0135	NaN	1	0	Median	1.147	1.338	NaN	1	0	Median	1.2755	1.2554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	643760000	291120000	352640000	159790000	74002000	85784000	245820000	120040000	125780000	238160000	97085000	141070000	0	0	0	53877	1293	50756	325895;325896;325897;325898	438946;438947;438948;438949	438949			4	
VEVAPGYVVTVLTWPGTNPTLSSILLNSHTDVVPVFK	1	Unmodified	3949.1241	0.12409147	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	98.985	89.542	4	0.059883	49206	160513_QHF_FH_JSI12Kac_6	12.234	3.396			0.9477	1.018	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9477	1.018	NaN	1	0	Median	56657000	28563000	28094000	0	0	0	0	0	0	0	0	0	56657000	28563000	28094000	53878	2203	50757	325899	438950	438950			1	
VEVEEVTVPEGFVQK	1	Unmodified	1687.8669	0.86686715	3493	Q8N0W3	FUK	L-fucose kinase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		72.018	71.67	2	0.0027188	65192	160511_QHF_FH_JSI11i_1	67.385	42.168			0.57882	0.55269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57882	0.55269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10596000	7020700	3575500	0	0	0	0	0	0	10596000	7020700	3575500	0	0	0	53879	3493	50758	325900	438951	438951			1	
VEVFEHAVNNTAGDDLAK	1	Unmodified	1927.9276	0.92756992	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.968	50.019	3	0.0018933	44162	160511_QHF_FH_JSI10i_2	46.514	27.191			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53880	1535	50759	325901	438952	438952			1	
VEVGTEVTDYR	0	Unmodified	1266.6092	0.6091959	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		40.851	40.083	2	0.0049594	36098	160511_QHF_FH_JSI11i_1	62.303	51.473			1.7973	1.5983	3.4101	2	1	Median	2.02	1.6373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5992	1.5602	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	187670000	89095000	98573000	61050000	21297000	39753000	0	0	0	126620000	67798000	58820000	0	0	0	53881	2348	50760	325902;325903	438953;438954	438953			2	
VEVPQPLSWYPEELAWHTNLSR	0	Unmodified	2650.318	0.31798668	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			2						2			2	2	96.204	91.507	3	7.157E-37	90121	160511_QHF_FH_JSI11i_3	186.06	171.9			1.2236	1.1863	14.064	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3238	1.2703	8.9312	2	0	Median	1.0425	1.0661	14.367	2	0	Median	1503100000	700220000	802860000	0	0	0	0	0	0	561350000	244560000	316790000	941730000	455660000	486070000	53882	2282	50761	325904;325905;325906;325907	438955;438956;438957	438955			3	
VEVQLPELFHK	1	Unmodified	1337.7343	0.73433683	2384	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	4	3	77.53	77.049	3	0.0015563	68027	160511_QHF_FH_JSI9i_2	51.979	48.124			1.384	1.267	41.977	8	4	Median	1.3944	1.1875	NaN	1	0	Median	0.74167	0.94754	NaN	1	0	Median	2.6634	2.5225	58.572	3	3	Plateau	1.7541	1.8179	40.857	3	1	Median	114410000	50872000	63534000	10518000	4547700	5970100	12259000	7803300	4455800	43524000	17576000	25948000	48105000	20945000	27160000	53883	2384	50762	325908;325909;325910;325911;325912;325913;325914;325915;325916	438958;438959;438960;438961;438962;438963;438964;438965;438966;438967;438968;438969	438962			12	
VEVSEDEPASK	1	Unmodified	1188.551	0.55101232	556	O75683	SURF6	Surfeit locus protein 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		17.807	17.687	2	0.0015127	15006	160511_QHF_FH_JSI10i_1	67.726	27.681			1.453	1.4126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.453	1.4126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	99002000	41447000	57555000	0	0	0	0	0	0	99002000	41447000	57555000	0	0	0	53884	556	50763	325917;325918	438970;438971	438971			2	
VEVTEFEDIK	1	Unmodified	1207.5972	0.59723423	2164	Q01105;P0DME0	SET;SETSIP	Protein SET;Protein SETSIP	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.57	10	4	5			2	3	1	1	5	8	7	6	62.809	59.244	1;2	6.862E-11	53765	160511_QHF_FH_JSI11i_1	144.77	124.98			1.0767	1.0281	35.545	23	8	Median	1.102	0.92369	64.756	5	1	Median	0.80789	0.9348	28.595	8	3	Median	1.1267	1.0628	13.876	5	1	Median	1.1367	1.258	28.66	5	3	Median	22869000000	11740000000	11130000000	3382000000	1641200000	1740800000	9313700000	5078000000	4235700000	3677200000	1923900000	1753300000	6496500000	3096400000	3400100000	53885	2164	50764	325919;325920;325921;325922;325923;325924;325925;325926;325927;325928;325929;325930;325931;325932;325933;325934;325935;325936;325937;325938;325939;325940;325941;325942;325943;325944	438972;438973;438974;438975;438976;438977;438978;438979;438980;438981;438982;438983;438984;438985;438986;438987;438988;438989;438990;438991;438992;438993;438994;438995;438996;438997;438998;438999;439000;439001;439002;439003;439004;439005;439006;439007;439008;439009;439010	438976			35	
VEVVSPLSSWK	1	Unmodified	1229.6656	0.66558856	4712	Q9H490	PIGU	Phosphatidylinositol glycan anchor biosynthesis class U protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	70.779	69.879	2	0.00039526	61183	160511_QHF_FH_JSI11i_2	72.006	47.662			0.81801	0.77831	10.438	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.62717	0.77831	NaN	1	1	Median	0.8449	0.82686	NaN	1	0	Median	0.63101	0.67476	NaN	1	0	Median	90602000	55962000	34640000	0	0	0	24506000	16515000	7991700	41800000	24746000	17054000	24296000	14702000	9593900	53886	4712	50765	325945;325946;325947	439011;439012;439013	439012			3	
VEVYLTELK	1	Unmodified	1092.6067	0.6066767	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	62.836	62.142	2	0.010803	56166	160511_QHF_FH_JSI10i_1	49.536	24.613			0.84451	0.88841	17.768	4	1	Median	NaN	NaN	NaN	0	0	Median	0.86408	0.97035	NaN	1	0	Median	0.82539	0.80068	NaN	1	1	Median	0.91032	0.9754	25.686	2	0	Median	96726000	47253000	49473000	0	0	0	33404000	17636000	15768000	15954000	9676400	6277300	47368000	19940000	27428000	53887	5626	50766	325948;325949;325950;325951	439014;439015;439016;439017;439018;439019	439019			6	
VEVYQQQIEMEK	1	Unmodified	1522.7337	0.73374448	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		47.656	46.839	2	9.9594E-05	41686	160511_QHF_FH_JSI9i_1	89.9	63.458			1.8522	1.6408	47.791	2	1	Median	1.4394	1.1703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.3833	2.3005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	104300000	33034000	71270000	42871000	19550000	23321000	0	0	0	61433000	13484000	47949000	0	0	0	53888	5458	50767	325952;325953	439020;439021	439021			2	
VEWIAAVTIAAGTAAIGYLAYK	1	Unmodified	2251.2253	0.22525549	5144	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	2	3			110.97	105.25	3	0.0087957	55762	160513_QHF_FH_JSI9Kac_6	48.896	39.85			0.71554	0.85852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71554	0.85852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7374400	4553800	2820600	0	0	0	7374400	4553800	2820600	0	0	0	0	0	0	53889	5144	50768	325954;325955;325956;325957;325958	439022;439023;439024;439025;439026	439022			5	
VEWSAFLEAADNLR	0	Unmodified	1619.7944	0.79437091	5324	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	101.3	101.26	2;3	7.0695E-10	87960	160511_QHF_FH_JSI12i_3	128.28	94.874			0.78797	0.88057	38.195	2	0	Median	NaN	NaN	NaN	0	0	Median	0.54536	0.67215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1385	1.1536	NaN	1	0	Median	266470000	119240000	147230000	50319000	21731000	28588000	46369000	29747000	16622000	0	0	0	169780000	67759000	102020000	53890	5324	50769	325959;325960;325961;325962;325963	439027;439028;439029;439030	439029			2	
VEYHAGGSTQNSIK	1	Unmodified	1489.7161	0.71612059	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.27		9	5					4		5	4	4	5	16.591	14.097	2;3	3.4451E-06	11947	160511_QHF_FH_JSI9i_2	131.43	104.83			1.0961	1.1676	11.802	18	2	Median	1.357	1.1377	14.87	5	2	Median	1.0235	1.3147	9.7496	4	0	Linear	1.1985	1.0885	12.808	4	0	Linear	1.0779	1.1966	10.58	5	0	Median	1688800000	827270000	861540000	279780000	122010000	157770000	298000000	136520000	161480000	330170000	161740000	168430000	780870000	407010000	373860000	53891	1856	50770	325964;325965;325966;325967;325968;325969;325970;325971;325972;325973;325974;325975;325976;325977;325978;325979;325980;325981	439031;439032;439033;439034;439035;439036;439037;439038;439039;439040;439041;439042;439043;439044;439045;439046;439047;439048;439049	439038			18	
VEYHFLSPYVSPK	1	Unmodified	1564.7926	0.79257999	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		8	8						8	6	6	6	6	65.518	61.996	2;3	3.3118E-14	32825	160513_QHF_FH_JSI9Kac_6	133.07	115.7			1.037	0.95932	11.032	24	0	Median	1.0892	0.89516	7.9896	6	0	Median	0.77052	0.92154	10.049	6	0	Median	1.1244	1.0777	8.0555	6	0	Median	0.99368	1.0715	8.8011	6	0	Median	9573400000	4542900000	5030500000	1195000000	549930000	645080000	1940000000	1000500000	939540000	3620600000	1657900000	1962700000	2817900000	1334600000	1483300000	53892	793	50771	325982;325983;325984;325985;325986;325987;325988;325989;325990;325991;325992;325993;325994;325995;325996;325997;325998;325999;326000;326001;326002;326003;326004;326005	439050;439051;439052;439053;439054;439055;439056;439057;439058;439059;439060;439061;439062;439063;439064;439065;439066;439067;439068;439069;439070;439071;439072;439073;439074;439075;439076;439077;439078;439079;439080;439081;439082;439083;439084;439085;439086;439087;439088;439089;439090;439091;439092;439093;439094	439084			44	
VEYPIMYSTDPENGHIFNCIQR	0	Oxidation (M)	2698.2156	0.2155718	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	72.367	72.22	3	5.9854E-08	64416	160511_QHF_FH_JSI11i_3	87.352	68.792			1.3982	1.3513	26.716	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2424	1.1187	NaN	1	0	Median	1.5735	1.6322	NaN	1	1	Median	88312000	37947000	50365000	0	0	0	0	0	0	48450000	20757000	27693000	39862000	17190000	22672000	53893	214	50772	326006;326007	439095;439096	439095		87	2	
VEYPIMYSTDPENGHIFNCIQR	0	Unmodified	2682.2207	0.22065718	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	79.56	78.983	3	9.4703E-24	68656	160511_QHF_FH_JSI12i_3	168.2	165.28			1.195	1.1742	13.157	6	0	Median	1.2676	1.0994	NaN	1	0	Median	1.0297	1.2416	NaN	1	0	Median	1.1233	1.0922	2.3481	2	0	Median	1.3601	1.4298	0.53309	2	0	Median	1308100000	589170000	718930000	78722000	28494000	50228000	156830000	71116000	85716000	631480000	303240000	328250000	441060000	186330000	254740000	53894	214	50772	326008;326009;326010;326011;326012;326013	439097;439098;439099;439100;439101;439102;439103;439104;439105;439106;439107	439107			11	
VEYQIKTFSGQTHGFVHR	1	Acetyl (K)	2175.0861	0.086136251	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.162	55.496	4	0.00078044	30069	160513_QHF_FH_JSI11Kac_6	72.421	58.38			0.26963	0.25884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26963	0.25884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10792000	9656700	1135400	0	0	0	0	0	0	10792000	9656700	1135400	0	0	0	53895	4027	50773	326014	439108	439108	3036		1	
VEYSEEELK	1	Unmodified	1124.5237	0.52373493	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.451	27.863	2	5.6123E-07	24576	160511_QHF_FH_JSI11i_1	138.1	116.8			1.2078	1.1207	16.676	4	0	Median	1.2601	1.0184	NaN	1	0	Median	0.75238	0.88243	NaN	1	0	Median	1.2815	1.2511	NaN	1	0	Median	1.1577	1.2333	NaN	1	0	Median	4489000000	2143300000	2345600000	902150000	370700000	531440000	989530000	509000000	480530000	1308700000	660820000	647840000	1288600000	602810000	685820000	53896	1023	50774	326015;326016;326017;326018	439109;439110;439111;439112;439113;439114;439115;439116;439117;439118;439119;439120	439110			12	
VEYTLGEESEAPGQR	0	Unmodified	1663.7689	0.76894402	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.49	8	1				4				2	5	3	3	42.304	39.003	2;3	6.7961E-40	34959	160511_QHF_FH_JSI10i_1	242.82	226.57			1.0791	1.0648	9.4889	12	2	Median	1.305	1.0673	3.0137	2	0	Median	0.83865	0.98993	16.808	4	2	Median	1.0825	1.0664	1.0564	3	0	Plateau	1.0825	1.1405	3.3035	3	0	Plateau	2474000000	1257700000	1216400000	330330000	147140000	183190000	788270000	459000000	329270000	755420000	353700000	401720000	600000000	297830000	302170000	53897	2217	50775	326019;326020;326021;326022;326023;326024;326025;326026;326027;326028;326029;326030;326031	439121;439122;439123;439124;439125;439126;439127;439128;439129;439130;439131;439132;439133;439134;439135;439136;439137;439138;439139;439140;439141;439142;439143	439132			23	
VEYTPYEEGLHSVDVTYDGSPVPSSPFQVPVTEGCDPSR	0	Unmodified	4295.9481	0.94811353	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	96.823	96.71	3	3.7118E-08	87642	160511_QHF_FH_JSI10i_1	51.632	50.194			1.4268	1.5261	13.359	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2285	1.3885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.657	1.6773	NaN	1	0	Median	56852000	22425000	34427000	0	0	0	32200000	13171000	19028000	0	0	0	24653000	9253800	15399000	53898	1192	50776	326032;326033	439144;439145;439146;439147;439148;439149;439150	439150			7	
VFAAGEETAHMSLVDK	1	Unmodified	1703.8189	0.8188711	1430	P35251	RFC1	Replication factor C subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		2	4									3	3	51.611	50.893	3	1.8212E-05	43439	160511_QHF_FH_JSI12i_3	99.747	88.802			1.0415	1.0599	40.145	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0415	1.0599	NaN	1	0	Median	1.2905	1.4233	51.419	2	1	Median	209310000	84749000	124560000	0	0	0	0	0	0	75524000	30726000	44798000	133780000	54023000	79761000	53899	1430	50777	326034;326035;326036;326037;326038;326039	439151;439152;439153;439154;439155;439156	439155			6	
VFAEYPGSSAQLR	0	Unmodified	1423.7096	0.70957864	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.083	47.102	2	0.00037218	40510	160511_QHF_FH_JSI11i_2	70.977	61.29			0.99951	1.1026	21.966	4	0	Median	0.86514	0.76695	NaN	1	0	Median	0.86176	1.0549	NaN	1	0	Median	1.1548	1.1525	NaN	1	0	Median	1.1847	1.2744	NaN	1	0	Median	115360000	58399000	56963000	15943000	9343700	6599700	21260000	10922000	10339000	46128000	24746000	21382000	32031000	13387000	18643000	53900	4733	50778	326040;326041;326042;326043	439157;439158;439159;439160;439161;439162	439161			6	
VFAFDATARPPGYEFELK	1	Unmodified	2057.0258	0.025827405	3391	Q8IU81	IRF2BP1	Interferon regulatory factor 2-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		83.634	83.634	3	0.0023373	74691	160511_QHF_FH_JSI11i_3	44.998	30.957			1.2649	1.1751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2649	1.1751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78553000	31183000	47370000	0	0	0	0	0	0	78553000	31183000	47370000	0	0	0	53901	3391	50779	326044	439163	439163			1	
VFAGYYTK	1	Unmodified	947.47527	0.4752686	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	1	3	32.627	31.793	2	0.018516	27051	160511_QHF_FH_JSI12i_2	52.716	28.744			0.92513	0.98978	51.959	8	3	Median	0.77854	0.65216	58.921	2	0	Median	0.81206	0.99069	24.57	2	0	Median	0.62416	0.63099	NaN	1	1	Median	1.3509	1.3903	45.608	3	2	Median	817570000	390120000	427450000	153340000	77823000	75519000	213360000	127610000	85743000	123510000	60289000	63224000	327360000	124400000	202960000	53902	140	50780	326045;326046;326047;326048;326049;326050;326051;326052	439164;439165;439166;439167;439168;439169;439170;439171;439172;439173;439174	439165			11	
VFAIQDPTLPLTSYK	1	Unmodified	1691.9134	0.91342341	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	88.507	87.753	2	0.00016434	77181	160511_QHF_FH_JSI11i_2	92.866	78.708			0.89233	0.89687	32.815	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1583	1.1311	NaN	1	0	Median	0.68741	0.71115	NaN	1	1	Median	19848000	7877900	11970000	0	0	0	0	0	0	13698000	4995900	8702200	6149500	2881900	3267500	53903	4286	50781	326053;326054	439175;439176;439177;439178	439177			4	
VFALWESGDMSDQHR	0	Unmodified	1776.789	0.78896795	5050	Q9NVU0	POLR3E	DNA-directed RNA polymerase III subunit RPC5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	62.781	62.638	3	2.5602E-05	55553	160511_QHF_FH_JSI11i_3	101.3	95.272			1.0455	1.0282	20.939	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.274	1.1923	NaN	1	0	Median	0.85788	0.8867	NaN	1	1	Median	131570000	67427000	64140000	0	0	0	0	0	0	73870000	36806000	37065000	57696000	30621000	27075000	53904	5050	50782	326055;326056	439179;439180;439181	439179			3	
VFANAPDSACVIGLK	1	Unmodified	1560.797	0.79701344	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	3	2	65.312	64.628	2	2.2644E-06	58809	160511_QHF_FH_JSI11i_1	124.42	100.04			1.0184	1.0197	35.502	8	3	Median	1.1078	0.97137	NaN	1	0	Median	1.1005	1.3141	43.634	2	1	Median	0.81846	0.82037	28.064	3	2	Median	1.3751	1.4838	46.179	2	0	Median	432620000	214090000	218530000	17574000	8385300	9188800	85693000	41877000	43816000	238260000	129820000	108440000	91090000	34005000	57085000	53905	1129	50783	326057;326058;326059;326060;326061;326062;326063;326064	439182;439183;439184;439185;439186;439187;439188;439189;439190;439191;439192;439193;439194	439183			13	
VFANNADQQLVK	1	Unmodified	1345.699	0.69901396	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	37.291	36.514	2	0.00012445	31126	160511_QHF_FH_JSI11i_2	85.355	76.661			0.98074	1.0872	34.911	6	2	Median	1.3272	1.1579	NaN	1	0	Median	0.88121	1.0815	NaN	1	0	Median	0.91635	0.90195	27.158	2	1	Median	0.73631	0.78945	63.978	2	1	Median	634260000	348730000	285520000	42178000	15587000	26591000	45573000	26817000	18756000	290120000	148650000	141470000	256390000	157680000	98707000	53906	2909	50784	326065;326066;326067;326068;326069;326070	439195;439196;439197;439198;439199;439200;439201;439202	439200			8	
VFANPEDCVAFGK	1	Unmodified	1452.6708	0.6707503	976	P10620	MGST1	Microsomal glutathione S-transferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.493	5	7								2	3	2	5	58.389	57.532	2	1.3095E-30	49353	160511_QHF_FH_JSI12i_2	159.83	122.63			1.024	1.1622	24.737	10	5	Median	1.6796	1.3935	15.408	2	1	Median	0.9409	1.0922	29.733	3	2	Median	0.9109	0.90916	0.28481	2	0	Median	1.099	1.2366	26.091	3	2	Median	1953400000	970500000	982930000	266220000	108430000	157790000	499710000	243750000	255960000	665920000	364580000	301340000	521590000	253740000	267840000	53907	976	50785	326071;326072;326073;326074;326075;326076;326077;326078;326079;326080;326081;326082	439203;439204;439205;439206;439207;439208;439209;439210;439211;439212;439213;439214;439215;439216;439217	439207			15	
VFAQPNLAEMIQK	1	Unmodified	1487.7806	0.7806351	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.119	76.896	3	0.017748	66453	160511_QHF_FH_JSI12i_2	34.685	27.645			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53908	5104	50786	326083	439218	439218			1	
VFASELNAGIIK	1	Unmodified	1260.7078	0.70778773	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.52	3	4	3					3		3	3	4	3	67.3	64.332	2	1.0513E-15	55376	160511_QHF_FH_JSI12i_2	155.42	129.04			1.0487	1.1441	148.11	13	7	Median	1.4528	1.2517	186.94	3	2	Median	0.82151	0.99946	176.33	3	1	Median	1.1082	1.0689	188.76	4	3	Median	0.96037	1.0834	14.19	3	1	Plateau	1856700000	1074100000	782590000	292320000	163100000	129230000	388080000	247660000	140420000	784790000	468530000	316260000	391500000	194810000	196680000	53909	5215	50787	326084;326085;326086;326087;326088;326089;326090;326091;326092;326093;326094;326095;326096	439219;439220;439221;439222;439223;439224;439225;439226;439227;439228;439229;439230;439231;439232;439233;439234;439235	439221			17	
VFASLPQVER	0	Unmodified	1144.6241	0.6240581	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	54.04	53.359	2	4.8383E-08	45584	160511_QHF_FH_JSI12i_3	124.98	105.2			1.1251	1.1234	7.1212	6	3	Median	1.2741	1.0719	NaN	1	1	Median	0.82625	1.0194	NaN	1	1	Median	1.1919	1.175	0.38837	2	0	Median	1.0752	1.1499	9.2696	2	1	Median	2991500000	1537000000	1454500000	549000000	354130000	194870000	437480000	250000000	187480000	989870000	436960000	552910000	1015100000	495890000	519220000	53910	472	50788	326097;326098;326099;326100;326101;326102;326103	439236;439237;439238;439239;439240;439241;439242;439243;439244	439243			9	
VFCYLGHYYR	0	Unmodified	1376.6336	0.63357693	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	57.983	48.644	2;3	1.0162E-06	25477	160513_QHF_FH_JSI12Kac_6	93.178	82.629			0.99477	1.0236	36.046	7	2	Median	1.1641	1.0236	NaN	1	0	Median	0.80086	0.93581	11.096	2	1	Median	1.3009	1.25	66.644	2	1	Median	1.2903	1.374	38.388	2	0	Median	344220000	153930000	190290000	28948000	10325000	18623000	203310000	87914000	115400000	58046000	30407000	27639000	53915000	25288000	28627000	53911	3117	50789	326104;326105;326106;326107;326108;326109;326110	439245;439246;439247;439248;439249;439250;439251;439252;439253;439254;439255	439251			11	
VFDAIMNFK	1	Unmodified	1083.5423	0.54230231	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.74	6.66	3	4	4					4	4	4	5	5	5	73.421	68.798	2	2.2945E-11	60854	160511_QHF_FH_JSI11i_2	161.11	161.11			0.90366	0.93955	9.0251	18	0	Median	1.1308	0.95091	7.9905	4	0	Median	0.79344	0.94949	11.575	5	0	Median	0.90232	0.92428	7.049	5	0	Median	0.892	0.93774	9.9729	4	0	Median	15167000000	7659200000	7508200000	2920700000	1488400000	1432300000	3425600000	1821600000	1604000000	4889700000	2191400000	2698300000	3931400000	2157800000	1773600000	53912	1033	50790	326111;326112;326113;326114;326115;326116;326117;326118;326119;326120;326121;326122;326123;326124;326125;326126;326127;326128;326129	439256;439257;439258;439259;439260;439261;439262;439263;439264;439265;439266;439267;439268;439269;439270;439271;439272;439273;439274;439275;439276;439277;439278;439279;439280;439281;439282;439283;439284;439285;439286;439287;439288;439289;439290;439291;439292;439293;439294;439295;439296;439297;439298;439299;439300;439301	439282			46	
VFDAIMNFK	1	Oxidation (M)	1099.5372	0.53721693	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.02		4	1					1	1	2	1	2	2	58.32	54.832	2	0.0037398	29617	160513_QHF_FH_JSI11Kac_6	68.383	58.396			0.87297	0.90262	22.12	7	0	Median	1.1326	0.96389	10.567	2	0	Median	0.74305	0.90262	NaN	1	0	Median	1.1494	1.1443	37.845	2	0	Median	0.81373	0.83548	18.752	2	0	Median	901850000	446710000	455140000	171360000	75784000	95572000	195990000	109560000	86439000	300440000	146750000	153680000	234060000	114620000	119450000	53913	1033	50790	326130;326131;326132;326133;326134;326135;326136	439302;439303;439304;439305;439306	439303		643	5	
VFDAIMNFKK	2	Oxidation (M)	1227.6322	0.63217995	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	3	1	2	45.643	44.533	2;3	0.0022308	38678	160511_QHF_FH_JSI11i_3	58.592	50.192			0.70675	0.72919	55.232	9	8	Median	0.7811	0.62094	36.462	3	2	Plateau	0.64162	0.72919	54.773	3	3	Median	1.9802	1.8669	NaN	1	1	Median	1.0501	1.0746	56.057	2	2	Median	2474500000	1384100000	1090400000	754060000	384100000	369960000	1057500000	649650000	407890000	199790000	88933000	110850000	463120000	261440000	201680000	53914	1033	50791	326137;326138;326139;326140;326141;326142;326143;326144;326145	439307;439308;439309;439310;439311;439312;439313;439314;439315;439316;439317	439307		643	11	
VFDAIMNFKK	2	Unmodified	1211.6373	0.63726532	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		8	16						4	8	7	7	6	59.363	57.337	2;3	1.5737E-06	48305	160511_QHF_FH_JSI10i_3	123.72	109.05			0.96865	1.0174	74.519	28	22	Median	1.3462	1.1525	72.919	8	6	Median	0.93541	1.1609	74.66	7	5	Median	1.0781	1.1061	91.801	7	6	Median	0.85251	0.91686	72.434	6	5	Median	54806000000	22056000000	32750000000	10069000000	3923900000	6145500000	9751000000	4781900000	4969000000	12523000000	6377000000	6146500000	22462000000	6972800000	15489000000	53915	1033	50791	326146;326147;326148;326149;326150;326151;326152;326153;326154;326155;326156;326157;326158;326159;326160;326161;326162;326163;326164;326165;326166;326167;326168;326169;326170;326171;326172;326173	439318;439319;439320;439321;439322;439323;439324;439325;439326;439327;439328;439329;439330;439331;439332;439333;439334;439335;439336;439337;439338;439339;439340;439341;439342;439343;439344;439345;439346;439347;439348;439349;439350;439351;439352;439353;439354;439355;439356;439357;439358;439359;439360	439328			43	
VFDAIMNFKK	2	Acetyl (K)	1253.6478	0.64783001	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		80.72	70.153	2	0.013806	37196	160513_QHF_FH_JSI11Kac_5	67.563	50.931			0.093633	0.092961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.093633	0.092961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4493300	3877000	616350	0	0	0	0	0	0	4493300	3877000	616350	0	0	0	53916	1033	50791	326174	439361	439361	857		1	
VFDAIMNFKK	2	Acetyl (K);Oxidation (M)	1269.6427	0.64274463	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		73.129	62.363	2	0.026995	33346	160513_QHF_FH_JSI11Kac_5	56.563	37.292			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53917	1033	50791	326175	439362	439362	857	643	1	
VFDAKPSAK	2	Unmodified	961.52328	0.52328142	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	11.205	11.265	2;3	0.011521	8953	160511_QHF_FH_JSI11i_3	41.54	25.337			1.1172	1.1451	28.023	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83448	0.80016	NaN	1	0	Median	1.169	1.2617	13.714	2	0	Median	315330000	154570000	160760000	0	0	0	0	0	0	42279000	24759000	17519000	273050000	129810000	143240000	53918	3788	50792	326176;326177;326178;326179	439363;439364;439365;439366	439365			4	
VFDDESDEKEDEEYADEK	2	Unmodified	2190.8601	0.86006303	366	O43719	HTATSF1	HIV Tat-specific factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.118	31.516	3	0.00019735	28256	160511_QHF_FH_JSI12i_1	58.848	55.129			0.79641	0.80217	29.033	4	0	Median	0.82545	0.66249	NaN	1	0	Median	0.72295	0.85855	NaN	1	0	Median	0.76839	0.74949	NaN	1	0	Median	1.2566	1.2924	NaN	1	0	Median	210910000	112870000	98032000	40967000	23180000	17787000	74512000	43730000	30782000	43450000	26413000	17036000	51978000	19551000	32427000	53919	366	50793	326180;326181;326182;326183	439367;439368;439369;439370	439368			4	
VFDFAGEEVR	0	Unmodified	1167.556	0.55603812	5271	Q9UEE9	CFDP1	Craniofacial development protein 1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				57.173	56.163	2	0.046676	49304	160511_QHF_FH_JSI9i_2	36.318	32.633			1.2016	1.0688	NaN	1	0	Median	1.2016	1.0688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48344000	17476000	30868000	48344000	17476000	30868000	0	0	0	0	0	0	0	0	0	53920	5271	50794	326184	439371	439371			1	
VFDFELSSQDMTTLLSYNR	0	Unmodified	2265.0623	0.062348845	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.58	101.45	2	1.9909E-10	89198	160511_QHF_FH_JSI11i_2	171.21	163.49			1.1125	1.1191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1125	1.1191	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117890000	56262000	61627000	0	0	0	0	0	0	117890000	56262000	61627000	0	0	0	53921	1067	50795	326185	439372	439372			1	
VFDFLVDSINK	1	Unmodified	1295.6762	0.67615325	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	86.014	85.225	2	4.4943E-05	73833	160511_QHF_FH_JSI12i_2	96.342	64.92			1.3088	1.1344	10.247	5	1	Median	1.3395	1.1491	1.8128	2	1	Median	0.83097	1.012	NaN	1	0	Median	1.3088	1.34	NaN	1	0	Median	0.97241	1.0992	NaN	1	0	Median	621650000	317160000	304490000	115010000	52998000	62012000	160790000	83622000	77165000	192710000	108910000	83797000	153140000	71623000	81518000	53922	2332	50796	326186;326187;326188;326189;326190;326191	439373;439374;439375;439376;439377;439378;439379;439380;439381;439382;439383;439384;439385;439386	439375			14	
VFDFTFSPEEMK	1	Unmodified	1475.6643	0.66426794	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							3	3	3	2	86.316	85.709	2	8.6178E-16	74122	160511_QHF_FH_JSI12i_2	157.95	150.3			1.0299	1.1105	34.22	10	3	Median	0.99626	0.84	56.302	2	1	Median	1.0511	1.2356	14.74	3	0	Median	1.1124	1.1184	45.135	3	1	Median	0.98668	1.0688	4.4151	2	1	Median	958100000	454590000	503510000	174600000	73953000	100650000	250740000	123200000	127540000	303520000	149490000	154030000	229230000	107950000	121280000	53923	1054	50797	326192;326193;326194;326195;326196;326197;326198;326199;326200;326201;326202	439387;439388;439389;439390;439391;439392;439393;439394;439395;439396;439397;439398;439399;439400;439401;439402;439403;439404;439405;439406;439407;439408;439409;439410;439411;439412;439413	439393			27	
VFDGIPPPYDK	1	Unmodified	1246.6234	0.6233894	1497	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.31	8	2					7			4	6	4	3	60.111	55.018	2;3	7.341E-13	50094	160511_QHF_FH_JSI12i_1	142.92	113.11			0.99679	0.99709	31.89	14	6	Median	1.2292	1.0017	21.247	4	2	Median	0.88132	1.0414	59.913	4	2	Median	0.99149	0.97287	4.4358	3	1	Median	0.89318	0.95019	18.993	3	1	Plateau	4887400000	2430400000	2457000000	966520000	435570000	530950000	1260100000	634680000	625440000	1409100000	678490000	730610000	1251700000	681690000	569970000	53924	1497	50798	326203;326204;326205;326206;326207;326208;326209;326210;326211;326212;326213;326214;326215;326216;326217;326218;326219	439414;439415;439416;439417;439418;439419;439420;439421;439422;439423;439424;439425;439426;439427;439428;439429;439430;439431;439432;439433;439434;439435;439436;439437;439438;439439;439440;439441;439442;439443;439444;439445;439446;439447;439448;439449;439450;439451;439452;439453;439454;439455;439456;439457;439458;439459;439460;439461;439462;439463;439464;439465;439466;439467;439468;439469;439470;439471	439430			58	
VFDHKQGTYGGYFR	1	Acetyl (K)	1715.8056	0.80560429	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		55.243	45.903	2;3	2.0102E-05	25209	160513_QHF_FH_JSI10Kac_6	98.676	91.637			0.56509	0.58753	105.65	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0534	1.2402	NaN	1	0	Median	0.30314	0.27834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92063000	68120000	23943000	0	0	0	30082000	16820000	13263000	61981000	51301000	10680000	0	0	0	53925	40	50799	326220;326221;326222;326223	439472;439473;439474;439475	439474	13		4	
VFDKDGNGYISAAELR	1	Acetyl (K)	1795.8741	0.87407779	958	P0DP25;P0DP24;P0DP23			yes	no	1	0	0	1			By MS/MS		15	0								1				1		75.393	64.697	2	1.6001E-23	34451	160513_QHF_FH_JSI11Kac_5	157.38	143.57			0.35477	0.34685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35477	0.34685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11623000	9155900	2467000	0	0	0	0	0	0	11623000	9155900	2467000	0	0	0	53926	958	50800	326224	439476;439477	439477	727		2	
VFDLLNRK	1	Unmodified	1003.5815	0.581465	95	O00139	KIF2A	Kinesin-like protein KIF2A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		43.216	42.173	3	0.00081129	34435	160511_QHF_FH_JSI9i_3	73.248	53.258			1.0902	0.55435	33.508	3	2	Plateau	1.2306	0.99003	NaN	1	0	Median	0.4804	0.55435	NaN	1	1	Median	0.5955	0.55387	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	267770000	151290000	116480000	96164000	55269000	40895000	68511000	34362000	34149000	103090000	61662000	41433000	0	0	0	53927	95	50801	326225;326226;326227;326228	439478;439479;439480;439481;439482	439481			5	
VFDLPESLGGIR	0	Unmodified	1301.698	0.69795133	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		3								1	1	1		80.906	80.246	2	0.020363	70567	160511_QHF_FH_JSI11i_2	42.001	36.46			1.0935	1.1588	5.9589	3	0	Median	1.3413	1.1588	NaN	1	0	Median	0.99079	1.2249	NaN	1	0	Median	1.0935	1.0874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	100550000	54364000	46186000	27109000	13306000	13802000	28526000	17221000	11305000	44916000	23837000	21079000	0	0	0	53928	5221	50802	326229;326230;326231	439483;439484	439483			2	
VFDLQFSTDSPR	0	Unmodified	1410.6779	0.67794416	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.947	66.044	2	0.00092601	58169	160511_QHF_FH_JSI9i_2	78.136	65.117			1.6148	1.7283	5.151	4	0	Linear	1.8404	1.5414	NaN	1	0	Median	1.3373	1.6123	NaN	1	0	Median	1.7084	1.7317	NaN	1	0	Median	1.5263	1.6893	NaN	1	0	Median	351800000	137360000	214440000	64338000	20119000	44219000	73729000	33924000	39805000	111180000	38620000	72555000	102560000	44692000	57864000	53929	2594	50803	326232;326233;326234;326235	439485;439486;439487;439488;439489;439490;439491	439487			7	
VFDMLNR	0	Unmodified	893.44292	0.44292261	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	44.813	44.002	2	0.011238	37546	160511_QHF_FH_JSI12i_3	71.378	51.531			1.0633	1.1529	13.62	6	0	Median	1.5422	1.2509	NaN	1	0	Median	0.9918	1.169	13.502	2	0	Median	0.97816	0.9831	5.9042	2	0	Median	1.2574	1.3006	NaN	1	0	Median	2726600000	1363800000	1362800000	63272000	26384000	36888000	687560000	360410000	327150000	1508200000	799140000	709030000	467560000	177860000	289700000	53930	1917;2519	50804	326236;326237;326238;326239;326240;326241	439492;439493;439494;439495;439496;439497	439497			6	
VFDMLNRR	0	Unmodified	1049.544	0.54403364	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.3	5.37		3	5						2	3	4	2	1	36.837	33.966	2;3	0.0015503	29741	160511_QHF_FH_JSI10i_2	55.531	29.147			0.8693	0.99131	21.504	9	0	Median	0.98246	0.80525	21.205	3	0	Median	0.85816	1.0086	2.6761	4	0	Median	1.4334	1.348	NaN	1	0	Median	0.79532	0.90475	NaN	1	0	Median	570420000	307570000	262850000	159450000	83589000	75863000	365620000	207320000	158300000	43215000	15545000	27670000	2130500	1112100	1018400	53931	1917;2519	50805	326242;326243;326244;326245;326246;326247;326248;326249;326250;326251	439498;439499;439500;439501;439502;439503;439504;439505;439506;439507;439508	439506			11	
VFDPQNDK	1	Unmodified	961.45051	0.45051041	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.681	15.152	2	0.0024119	12675	160511_QHF_FH_JSI10i_1	78.377	41.283			1.0909	1.1431	14.193	3	0	Median	1.5049	1.247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96233	0.94483	NaN	1	0	Median	1.0909	1.1431	NaN	1	0	Median	544160000	236960000	307200000	160310000	66366000	93945000	0	0	0	184220000	83919000	100300000	199620000	86678000	112950000	53932	257	50806	326252;326253;326254;326255	439509;439510	439510			2	
VFDPQNDKPSK	2	Unmodified	1273.6303	0.63026569	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.75	2	4	5							3	2	4	2	16.716	16.234	2;3	0.00015756	13045	160511_QHF_FH_JSI11i_2	63.727	54.538			0.87241	0.8896	24.401	11	3	Median	1.3599	1.1564	31.271	3	2	Median	0.76129	0.91487	3.9603	2	0	Median	0.63891	0.6288	26.517	4	1	Linear	0.77257	0.82463	9.7633	2	0	Median	2024200000	1138900000	885230000	194850000	85771000	109080000	327520000	216350000	111180000	671730000	360230000	311500000	830070000	476600000	353470000	53933	257	50807	326256;326257;326258;326259;326260;326261;326262;326263;326264;326265;326266	439511;439512;439513;439514;439515;439516;439517;439518;439519;439520;439521;439522;439523;439524;439525	439520			14	
VFDPVPVGVTK	1	Unmodified	1156.6492	0.64921022	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	3.22	5	5	3				1			3	4	3	4	60.179	58.741	2	0.00030372	53462	160511_QHF_FH_JSI12i_1	76.282	66.371			0.91553	0.90534	15.706	14	5	Median	0.98969	0.83479	6.338	3	2	Median	0.7806	0.917	16.326	4	2	Median	1.0542	1.0468	11.381	3	0	Plateau	0.82404	0.87067	10.884	4	1	Median	6539200000	3474800000	3064300000	1405000000	741150000	663840000	2009500000	1118700000	890830000	1877500000	935970000	941500000	1247200000	679020000	568170000	53934	2265	50808	326267;326268;326269;326270;326271;326272;326273;326274;326275;326276;326277;326278;326279;326280	439526;439527;439528;439529;439530;439531;439532;439533;439534;439535;439536;439537;439538;439539;439540	439530			15	
VFDQQSSPMVTR	0	Unmodified	1393.666	0.66599927	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	33.963	33.32	2	0.001168	29778	160511_QHF_FH_JSI10i_1	64.82	49.676			0.76966	0.75213	36.554	6	4	Median	0.81442	0.68114	39.353	2	1	Median	0.92682	1.0764	NaN	1	0	Median	0.54741	0.53151	23.768	2	2	Median	0.96446	0.99497	NaN	1	1	Median	312240000	172800000	139440000	105940000	55019000	50925000	69851000	40988000	28863000	101570000	59416000	42152000	34878000	17378000	17500000	53935	280	50809	326281;326282;326283;326284;326285;326286;326287	439541;439542;439543;439544;439545;439546	439543			6	
VFDVIIR	0	Unmodified	860.51199	0.51198846	1012	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.528	56.592	2	0.047212	48458	160511_QHF_FH_JSI12i_2	43.814	11.749			0.90055	0.98536	4.0216	4	0	Median	1.1971	1.0383	NaN	1	0	Median	0.82944	1.0059	NaN	1	0	Median	0.95464	0.96521	NaN	1	0	Median	0.84952	0.95018	NaN	1	0	Median	532000000	276520000	255480000	78721000	37652000	41069000	121510000	69325000	52186000	167790000	94914000	72874000	163980000	74631000	89350000	53936	1012	50810	326288;326289;326290;326291	439547	439547			1	
VFDVMKK	2	Unmodified	865.47316	0.47316011	2948	Q5T5U3	ARHGAP21	Rho GTPase-activating protein 21	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	24.798	24.772	3	0.016041	20554	160511_QHF_FH_JSI12i_3	43.246	32.832			2.7663	2.7593	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7663	2.7593	NaN	1	1	Median	29883000	7459600	22423000	0	0	0	0	0	0	0	0	0	29883000	7459600	22423000	53937	2948	50811	326292	439548	439548			1	
VFDWIEANLSEQQIVSNTLVR	0	Unmodified	2460.2649	0.26488848	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.67	6.6		2							1		1	1	1	98.589	96.581	3	6.8541E-22	89081	160511_QHF_FH_JSI11i_2	152.04	137.27			1.1972	1.2179	17.922	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.76904	0.90166	NaN	1	1	Median	1.1972	1.2179	NaN	1	0	Median	1.1021	1.2409	NaN	1	1	Median	535940000	245370000	290570000	0	0	0	68505000	48673000	19832000	317160000	143460000	173690000	150280000	53239000	97043000	53938	2217	50812	326293;326294;326295	439549;439550;439551	439550			2	
VFDYSEYWEGAR	0	Unmodified	1520.6572	0.65720872	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	2	1	1	1	70.72	68.287	2	1.3807E-05	61140	160511_QHF_FH_JSI10i_2	125.68	112.59			0.95002	1.0453	5.1721	4	1	Median	1.269	1.0758	NaN	1	1	Median	0.87873	1.0766	NaN	1	0	Median	1.0008	0.96682	NaN	1	0	Median	0.90183	1.0157	NaN	1	0	Median	465220000	240860000	224360000	98491000	39759000	58732000	130210000	80207000	50007000	150520000	70894000	79631000	85992000	50000000	35992000	53939	1002	50813	326296;326297;326298;326299;326300	439552;439553;439554;439555;439556;439557;439558;439559	439558			8	
VFEEDALSWEDK	1	Unmodified	1466.6565	0.65654002	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								1	2	2	2	64.09	63.458	2	2.1051E-06	56555	160511_QHF_FH_JSI9i_1	125.74	100.52			0.95671	0.98694	33.519	7	3	Median	1.1486	0.9363	NaN	1	0	Median	0.87306	1.0609	10.225	2	1	Median	1.1012	1.0849	42.723	2	1	Median	1.1041	1.1421	67.401	2	1	Median	1089300000	509530000	579780000	132630000	68796000	63837000	207930000	95204000	112730000	388830000	171200000	217630000	359920000	174330000	185580000	53940	2517	50814	326301;326302;326303;326304;326305;326306;326307	439560;439561;439562;439563;439564;439565;439566;439567	439565			8	
VFEELQATDK	1	Unmodified	1178.5819	0.58191851	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.638	36.03	2	1.3766E-05	32308	160511_QHF_FH_JSI10i_1	101.65	55.22			1.0812	1.1584	61.944	4	0	Median	4.3903	3.5488	NaN	1	0	Median	0.88781	1.0283	NaN	1	0	Median	0.92117	0.90624	NaN	1	0	Median	1.269	1.305	NaN	1	0	Median	574920000	267160000	307760000	68912000	12689000	56223000	151820000	84906000	66909000	181710000	92530000	89183000	172480000	77038000	95444000	53941	1895	50815	326308;326309;326310;326311	439568;439569;439570;439571;439572;439573	439573			6	
VFEGNRPTNSIVFTK	1	Unmodified	1707.8944	0.8944193	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	5.92		5	8					1	4	6	5	4	3	48.99	45.692	2;3	0.00014266	38206	160511_QHF_FH_JSI10i_3	66.246	56.146		+	0.8977	0.86938	17.372	18	0	Median	0.94605	0.78422	14.878	6	0	Median	0.89049	1.0393	14.075	5	0	Median	0.89741	0.86938	12.781	4	0	Median	0.72286	0.74919	29.462	3	0	Median	7819300000	4112400000	3706900000	2864200000	1399300000	1464900000	3006800000	1655800000	1350900000	1579900000	820280000	759640000	368410000	237010000	131400000	53942	856;75	50816	326312;326313;326314;326315;326316;326317;326318;326319;326320;326321;326322;326323;326324;326325;326326;326327;326328;326329	439574;439575;439576;439577;439578;439579;439580;439581;439582;439583;439584;439585;439586;439587;439588;439589;439590;439591;439592;439593;439594;439595;439596;439597;439598;439599;439600;439601;439602;439603;439604;439605;439606;439607;439608;439609;439610;439611;439612;439613;439614	439581			41	
VFEGPPKPEEPLK	2	Unmodified	1465.7817	0.78168095	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		41.598	41.132	3	0.030089	35318	160511_QHF_FH_JSI11i_2	37.156	24.796			1.1127	1.1214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1127	1.1214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	115330000	51666000	63664000	0	0	0	0	0	0	115330000	51666000	63664000	0	0	0	53943	3122	50817	326330	439615	439615			1	
VFEGQTNIETSGLPK	1	Unmodified	1618.8203	0.82025131	2891	Q5HYK7	SH3D19	SH3 domain-containing protein 19	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.417	51.88	2	8.8594E-12	46941	160511_QHF_FH_JSI11i_1	111.12	78.599			0.6503	0.71302	44.093	2	1	Median	NaN	NaN	NaN	0	0	Median	0.46403	0.52203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91135	0.97389	NaN	1	0	Median	55116000	36674000	18442000	0	0	0	32633000	24576000	8056800	0	0	0	22483000	12098000	10385000	53944	2891	50818	326331;326332;326333	439616;439617;439618;439619	439616			4	
VFEHDSVELNCK	1	Unmodified	1475.6715	0.67147858	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	1	2	3	31.002	30.046	2;3	1.5833E-06	25403	160511_QHF_FH_JSI11i_2	100.38	89.271			0.8254	0.83347	40.573	7	3	Median	0.8254	0.7008	NaN	1	1	Median	0.6696	0.83347	NaN	1	0	Median	0.74234	0.76379	28.434	2	0	Median	1.5478	1.7327	46.448	3	2	Plateau	432360000	249560000	182800000	26868000	14644000	12224000	68195000	45229000	22966000	193250000	126190000	67053000	144050000	63497000	80552000	53945	979	50819	326334;326335;326336;326337;326338;326339;326340	439620;439621;439622;439623;439624;439625;439626;439627	439625			8	
VFEHFLENLDK	1	Unmodified	1389.6929	0.69286595	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	62.659	62.11	2;3	1.8892E-08	53412	160511_QHF_FH_JSI12i_3	109.24	94.034			0.91426	1.0109	22.245	8	2	Median	1.2048	1.0476	NaN	1	0	Median	0.91426	1.0784	3.2533	2	0	Median	1.0225	0.9755	27.932	3	2	Median	0.72676	0.74211	17.223	2	0	Median	961120000	503320000	457810000	42411000	15869000	26541000	119820000	56777000	63041000	428940000	245270000	183670000	369950000	185400000	184550000	53946	1669	50820	326341;326342;326343;326344;326345;326346;326347;326348	439628;439629;439630;439631;439632;439633;439634;439635;439636;439637;439638;439639;439640	439638			13	
VFEHIGK	1	Unmodified	828.44939	0.4493882	800	P04040	CAT	Catalase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.277	15.34	2	0.012077	12103	160511_QHF_FH_JSI12i_3	75.311	50.312			3.5955	3.6965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5955	3.6965	NaN	1	1	Median	281710000	71888000	209830000	0	0	0	0	0	0	0	0	0	281710000	71888000	209830000	53947	800	50821	326349	439641	439641			1	
VFEISPFEPWITR	0	Unmodified	1619.8348	0.83477916	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	3	0			3							1		1	1	101.38	101.33	2	7.5464E-11	90395	160511_QHF_FH_JSI11i_3	153.12	108.93			1.0606	1.0647	52.463	3	0	Median	2.9432	2.4226	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95257	0.91319	NaN	1	0	Median	1.0606	1.0647	NaN	1	0	Median	687940000	337660000	350280000	22844000	7124700	15719000	0	0	0	304760000	155340000	149420000	360340000	175200000	185140000	53948	2767	50822	326350;326351;326352	439642;439643	439642			2	
VFELMTSLHTK	1	Unmodified	1304.6799	0.67985842	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	7						4	1	4	3	6	61.453	58.382	2;3	1.1163E-07	31755	160513_QHF_FH_JSI11Kac_6	106.49	95.587			1.028	1.066	35.729	14	6	Median	1.0509	0.90867	NaN	1	0	Median	0.87042	1.058	32.135	4	2	Median	1.1457	1.0828	7.9355	3	0	Plateau	0.9854	1.0262	49.985	6	4	Median	4758900000	2314700000	2444200000	114790000	53541000	61246000	918530000	445060000	473470000	1072400000	496430000	576020000	2653100000	1319700000	1333400000	53949	2244	50823	326353;326354;326355;326356;326357;326358;326359;326360;326361;326362;326363;326364;326365;326366	439644;439645;439646;439647;439648;439649;439650;439651;439652;439653;439654;439655;439656;439657;439658;439659;439660	439649			17	
VFELMTSLHTK	1	Oxidation (M)	1320.6748	0.67477304	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	9.5	6.5			1						1	1			1	45.169	44.93	2;3	0.0022636	38366	160511_QHF_FH_JSI12i_3	85.355	70.094			0.35205	0.36428	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35205	0.36428	NaN	1	1	Median	24139000	14652000	9487000	0	0	0	0	0	0	0	0	0	24139000	14652000	9487000	53950	2244	50823	326367;326368	439661;439662	439662		1860	2	
VFEMSQDK	1	Unmodified	982.44298	0.44298219	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	22.39	21.896	2	0.0055661	19046	160511_QHF_FH_JSI10i_1	65.246	33.957			1.0438	1.1849	11.28	5	1	Median	1.5221	1.2547	NaN	1	0	Median	1.0431	1.2195	NaN	1	0	Median	1.0133	0.99894	3.9246	2	1	Median	1.1312	1.1849	NaN	1	0	Median	1106800000	559890000	546960000	168980000	76003000	92976000	248490000	140040000	108440000	382940000	194470000	188470000	306440000	149370000	157070000	53951	2545	50824	326369;326370;326371;326372;326373	439663;439664;439665;439666;439667	439665			5	
VFEPNEEALGVVLHK	1	Unmodified	1679.8883	0.88827129	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	72.7	72.066	3	2.3485E-10	63180	160511_QHF_FH_JSI11i_2	146	127.27			1.0521	0.91221	13.883	6	0	Plateau	1.2433	1.0555	NaN	1	0	Median	0.70144	0.86576	NaN	1	0	Median	1.0365	1.0108	12.674	2	0	Median	1.0817	1.1598	14.518	2	0	Median	1356600000	658010000	698550000	199720000	83575000	116140000	280740000	142110000	138630000	522500000	235490000	287020000	353600000	196830000	156760000	53952	346	50825	326374;326375;326376;326377;326378;326379	439668;439669;439670;439671;439672;439673;439674;439675;439676	439673			9	
VFEPNEEALGVVLHKDSK	2	Acetyl (K)	2052.0528	0.052770437	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		81.492	70.941	3	0.017904	37588	160513_QHF_FH_JSI11Kac_5	46.621	37.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1591200	1591200	0	0	0	0	0	0	0	1591200	1591200	0	0	0	0	53953	346	50826	326380	439677	439677	175		1	
VFESIGK	1	Unmodified	778.4225	0.42250475	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.86	4	4	2					1		4	2	3	2	25.962	24.445	2	0.017885	20612	160511_QHF_FH_JSI12i_2	60.788	35.789			1.1123	1.094	60.74	11	2	Median	1.0628	0.88669	67.566	4	2	Median	0.97124	1.1406	18.549	2	0	Median	1.2405	1.2546	73.54	3	0	Median	0.87811	0.95753	30.787	2	0	Median	5990400000	3187700000	2802700000	1667300000	904200000	763050000	719160000	382280000	336880000	2231100000	1192500000	1038600000	1372800000	708670000	664150000	53954	1424	50827	326381;326382;326383;326384;326385;326386;326387;326388;326389;326390;326391	439678;439679;439680;439681;439682;439683;439684;439685;439686;439687;439688;439689	439681			12	
VFEVMLATDR	0	Unmodified	1179.5958	0.59579444	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		71.043	61.579	2	0.041157	33359	160513_QHF_FH_JSI11Kac_6	61.679	41.902			1.0001	1.0011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0001	1.0011	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	7746600	2870300	4876200	0	0	0	0	0	0	7746600	2870300	4876200	0	0	0	53955	1202	50828	326392	439690	439690			1	
VFEVNASNLEK	1	Unmodified	1248.635	0.63501672	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.7	3	4	2				1			2	2	2	4	50.258	48.383	2	1.7844E-09	42756	160511_QHF_FH_JSI10i_2	132.78	88.971			1.1951	1.2269	47.384	9	4	Median	1.6486	1.3694	15.547	2	2	Median	0.99865	1.1962	20.986	2	0	Median	2.0693	2.0385	61.068	2	1	Median	0.83159	0.90604	35.955	3	1	Median	1796800000	805190000	991620000	401320000	145720000	255600000	517090000	256890000	260200000	578530000	257140000	321390000	299870000	145440000	154430000	53956	5215	50829	326393;326394;326395;326396;326397;326398;326399;326400;326401;326402	439691;439692;439693;439694;439695;439696;439697;439698;439699	439697			9	
VFEVSLADLQNDEVAFR	0	Unmodified	1950.9687	0.96870646	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.87	0.718	5	7	3							2	5	4	4	99.136	99.041	2;3	8.8061E-31	86875	160511_QHF_FH_JSI11i_2	194.7	180.14			0.8807	0.95159	9.7793	8	4	Median	1.1615	0.97295	3.8129	2	1	Median	0.70834	0.8273	12.333	3	2	Median	1.0147	0.99469	11.353	2	1	Median	0.84798	0.95614	NaN	1	0	Median	274010000	159880000	114120000	57885000	30343000	27541000	72552000	46225000	26327000	93296000	54341000	38955000	50275000	28975000	21300000	53957	1948	50830	326403;326404;326405;326406;326407;326408;326409;326410;326411;326412;326413;326414;326415;326416;326417	439700;439701;439702;439703;439704;439705;439706;439707;439708;439709;439710;439711;439712;439713;439714;439715;439716;439717;439718;439719	439715			20	
VFEVSLADLQNDEVAFRK	1	Unmodified	2079.0637	0.063669474	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		7	8							3	5	5	2	88.78	88.275	2;3	1.8485E-31	73915	160511_QHF_FH_JSI10i_3	186.75	177			0.83665	0.81143	24.238	13	2	Median	1.056	0.91945	12.042	3	0	Median	0.66036	0.81143	35.736	5	2	Median	0.85505	0.79477	18.486	3	0	Median	0.73402	0.74682	0.75515	2	0	Median	4878500000	2640100000	2238500000	732660000	383900000	348760000	934760000	550680000	384080000	1914400000	987220000	927200000	1296700000	718250000	578450000	53958	1948	50831	326418;326419;326420;326421;326422;326423;326424;326425;326426;326427;326428;326429;326430;326431;326432	439720;439721;439722;439723;439724;439725;439726;439727;439728;439729;439730;439731;439732;439733;439734;439735;439736;439737;439738;439739;439740;439741;439742;439743;439744;439745;439746;439747;439748;439749;439750;439751;439752;439753;439754;439755;439756;439757;439758;439759;439760;439761	439731			42	
VFFDLMR	0	Unmodified	926.46841	0.46840908	993;994	P11233;P11234	RALA;RALB	Ras-related protein Ral-A;Ras-related protein Ral-B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	73.412	72.577	2	0.0023955	60869	160511_QHF_FH_JSI10i_3	111.28	104.52			1.0116	1.0459	12.444	8	0	Median	1.3267	1.1198	12.518	2	0	Median	0.82416	0.97891	12.225	2	0	Median	1.0946	1.0637	9.8861	2	0	Median	0.89128	0.95484	18.804	2	0	Median	1847900000	956290000	891650000	267170000	126020000	141150000	343890000	191400000	152490000	593630000	316130000	277490000	643260000	322730000	320520000	53959	993;994	50832	326433;326434;326435;326436;326437;326438;326439;326440	439762;439763;439764;439765;439766;439767;439768;439769;439770;439771;439772;439773;439774;439775;439776;439777	439767			16	
VFFIGTFLGVAPPSFVAIK	1	Unmodified	2009.139	0.13900667	2874	Q5BJD5	TMEM41B	Transmembrane protein 41B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	99.064	89.733	3	9.0925E-10	49292	160513_QHF_FH_JSI12Kac_6	113.29	98.593			0.84354	0.83056	7.5658	3	1	Median	1.1132	0.9344	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84354	0.8114	NaN	1	0	Median	0.78735	0.83056	NaN	1	0	Median	535330000	301020000	234310000	188520000	112990000	75529000	0	0	0	270090000	145460000	124630000	76728000	42572000	34156000	53960	2874	50833	326441;326442;326443	439778;439779;439780;439781	439781			4	
VFFIQACQGDNYQK	1	Unmodified	1716.793	0.7929907	2575	Q14790	CASP8	Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.849	58.718	2	3.3431E-05	50530	160511_QHF_FH_JSI12i_3	140.3	124.05			1.2484	1.3526	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2484	1.3526	NaN	1	1	Median	21101000	3161000	17940000	0	0	0	0	0	0	9970600	0	9970600	11130000	3161000	7969300	53961	2575	50834	326444;326445	439782;439783	439783			2	
VFFLPSK	1	Unmodified	836.47963	0.47962569	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	59.897	58.987	2	0.035999	50718	160511_QHF_FH_JSI12i_3	49.358	32.432			0.97105	1.0536	16.427	6	0	Median	1.3116	1.1569	NaN	1	0	Median	0.78928	0.92953	4.4864	2	0	Median	1.1736	1.2325	NaN	1	0	Median	0.98778	1.0239	25.901	2	0	Median	501350000	234760000	266590000	28043000	13331000	14712000	178170000	91835000	86333000	37648000	16993000	20655000	257490000	112600000	144890000	53962	236	50835	326446;326447;326448;326449;326450;326451	439784;439785	439785			2	
VFFMAVDGVAPR	0	Unmodified	1307.6696	0.66962808	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	76.603	76.465	2	0.00067556	68237	160511_QHF_FH_JSI11i_3	68.657	53.513			1.1544	1.1293	33.135	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93684	0.89342	NaN	1	0	Median	1.4225	1.4275	NaN	1	0	Median	91054000	35823000	55231000	0	0	0	0	0	0	36378000	16973000	19405000	54676000	18850000	35826000	53963	3482	50836	326452;326453	439786;439787	439786			2	
VFFNILEEAR	0	Unmodified	1236.6503	0.65027285	5498	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	83.18	83.085	2	0.00038059	72121	160511_QHF_FH_JSI12i_3	76.345	66.929			1.0143	0.97103	4.624	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0286	0.9398	NaN	1	0	Median	1.0002	1.0033	NaN	1	0	Median	164930000	82258000	82673000	0	0	0	0	0	0	71478000	35258000	36220000	93454000	47000000	46454000	53964	5498	50837	326454;326455	439788;439789;439790;439791	439790			4	
VFFPLCGK	1	Unmodified	966.49971	0.49970921	1742	P51580	TPMT	Thiopurine S-methyltransferase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		63.585	63.052	2	0.019092	55015	160511_QHF_FH_JSI11i_2	47.067	20.465			1.4215	1.436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4215	1.436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23745000	9170200	14575000	0	0	0	0	0	0	23745000	9170200	14575000	0	0	0	53965	1742	50838	326456	439792;439793	439793			2	
VFFTCNACGESVK	1	Unmodified	1517.6643	0.66428471	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	45.426	45.185	2	3.9939E-05	38596	160511_QHF_FH_JSI12i_3	79.741	65.835			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53966	5095	50839	326457	439794	439794			1	
VFFVHEGYQGLVDGGDHIK	1	Unmodified	2116.0378	0.037789075	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.61		2	7						8	3	5	5	4	68.654	64.219	3;4	1.0636E-33	55794	160511_QHF_FH_JSI12i_3	195.77	182.54			0.9504	0.94144	52.45	17	6	Median	1.1137	0.97655	26.356	3	0	Plateau	1.1888	1.3579	67.754	5	4	Median	0.9504	0.89658	13.049	5	2	Median	0.83463	0.85097	5.9875	4	0	Median	4422300000	2044700000	2377600000	153440000	64961000	88481000	749810000	268650000	481170000	1474900000	699540000	775380000	2044200000	1011500000	1032600000	53967	897	50840	326458;326459;326460;326461;326462;326463;326464;326465;326466;326467;326468;326469;326470;326471;326472;326473;326474	439795;439796;439797;439798;439799;439800;439801;439802;439803;439804;439805;439806;439807;439808;439809;439810;439811;439812;439813;439814;439815;439816;439817;439818;439819;439820	439813			26	
VFFVYVGGESPLK	1	Unmodified	1440.7653	0.76530261	4142	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	84.846	80.385	2	1.1889E-16	42675	160513_QHF_FH_JSI10Kac_6	141.93	123.62			0.88063	0.85772	30.726	8	3	Median	0.86606	0.73657	21.399	2	1	Median	1.123	1.3682	6.6643	2	1	Median	0.7386	0.73121	29.186	2	1	Median	0.77381	0.84238	2.6864	2	0	Median	631220000	322570000	308650000	161950000	80100000	81850000	204920000	95074000	109840000	195080000	105930000	89156000	69273000	41472000	27800000	53968	4142	50841	326475;326476;326477;326478;326479;326480;326481;326482	439821;439822;439823;439824;439825;439826;439827;439828;439829;439830;439831;439832	439831			12	
VFFWWLNPLFK	1	Unmodified	1495.8016	0.80162854	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.69			3	1					7	2	4	3	2	100.03	93.586	2;3	2.9156E-15	51760	160513_QHF_FH_JSI9Kac_6	159.2	147.6			1.0289	1.0738	19.371	9	1	Median	1.559	1.3577	6.9287	2	0	Median	0.8032	0.92499	10.6	2	0	Median	1.1318	1.0965	18.11	3	1	Median	0.91061	0.94515	18.046	2	0	Median	12900000000	6100700000	6799600000	2521300000	1001300000	1520000000	5502000000	2880300000	2621600000	4254000000	1921600000	2332400000	622930000	297410000	325520000	53969	292	50842	326483;326484;326485;326486;326487;326488;326489;326490;326491;326492;326493	439833;439834;439835;439836;439837;439838;439839;439840;439841;439842;439843;439844;439845;439846;439847	439839			15	
VFFYNPTTR	0	Unmodified	1143.5713	0.57129425	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	60.306	53.626	2	1.1347E-05	44974	160511_QHF_FH_JSI10i_3	126.67	110.79			1.0808	1.0798	15.501	6	2	Median	1.3542	1.1111	21.921	2	0	Median	0.91171	1.0798	14.949	2	1	Median	0.96126	0.94182	NaN	1	1	Median	1.167	1.2876	NaN	1	0	Median	681450000	356400000	325060000	331710000	154720000	176980000	322050000	189220000	132840000	13883000	6756100	7127000	13806000	5700700	8105500	53970	203	50843	326494;326495;326496;326497;326498;326499	439848;439849;439850;439851;439852;439853;439854;439855;439856	439848			9	
VFGAPEVLENLEVK	1	Unmodified	1542.8294	0.82935943	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	90.032	89.454	2	0.00027581	79474	160511_QHF_FH_JSI10i_2	83.137	60.608			1.1358	1.0657	12.925	4	1	Median	1.162	0.99983	NaN	1	0	Median	0.79747	0.98439	NaN	1	0	Median	1.1332	1.1358	NaN	1	0	Median	1.1384	1.299	NaN	1	1	Median	200830000	101650000	99178000	44171000	18791000	25379000	61560000	34091000	27469000	59889000	30663000	29225000	35213000	18109000	17104000	53971	3734	50844	326500;326501;326502;326503	439857;439858;439859;439860;439861;439862;439863	439863			7	
VFGATTNYGK	1	Unmodified	1056.524	0.52400971	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	25.867	24.985	2	0.062505	21512	160511_QHF_FH_JSI9i_2	32.999	23.582			0.86573	0.78867	13.99	3	0	Median	0.86573	0.75638	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79895	0.78867	NaN	1	0	Median	0.90754	0.98146	NaN	1	0	Median	112860000	68383000	44472000	32151000	18390000	13761000	0	0	0	48189000	32764000	15424000	32516000	17230000	15287000	53972	752	50845	326504;326505;326506	439864	439864			1	
VFGFSLITNK	1	Unmodified	1124.623	0.62299547	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.156	77.396	2	1.626E-09	63808	160511_QHF_FH_JSI9i_3	133.23	103.05			0.92926	0.91605	6.6158	4	0	Median	1.1083	0.86947	NaN	1	0	Median	0.86031	1.0001	NaN	1	0	Median	1.0037	0.95235	NaN	1	0	Median	0.83837	0.88114	NaN	1	0	Median	6320600000	3000100000	3320500000	1443500000	614220000	829230000	1347100000	604700000	742440000	1333800000	636430000	697380000	2196200000	1144700000	1051500000	53973	771	50846	326507;326508;326509;326510	439865;439866;439867;439868;439869;439870;439871;439872;439873;439874;439875;439876	439873			12	
VFGGTVHK	1	Unmodified	843.46029	0.46028724	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.3			7						1	3	1	2	2	10.742	9.6036	2;3	0.0010083	7505	160511_QHF_FH_JSI9i_3	71.692	55.811			0.94044	0.8934	24.759	8	1	Median	1.1216	0.96384	39.084	3	1	Median	1.0656	1.2164	NaN	1	0	Median	0.94044	0.8934	2.7988	2	0	Median	0.80545	0.82114	7.3759	2	0	Median	6702500000	3098600000	3603900000	1597300000	709860000	887440000	631910000	328100000	303810000	1588900000	693640000	895220000	2884400000	1367000000	1517400000	53974	1693	50847	326511;326512;326513;326514;326515;326516;326517;326518	439877;439878;439879;439880;439881;439882;439883;439884;439885;439886;439887;439888	439883			12	
VFGGTVHKK	2	Unmodified	971.55525	0.55525025	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	6.1917	5.9864	2;3	0.00076016	4102	160511_QHF_FH_JSI10i_3	61.65	45.11			0.76233	0.83437	21.362	9	2	Median	1.3707	1.1014	19.657	2	0	Median	0.68353	0.77639	16.886	2	0	Median	0.88735	0.83437	20.588	3	2	Median	0.70882	0.71228	0.2303	2	0	Median	3845000000	1947300000	1897600000	890560000	317600000	572960000	494840000	281280000	213570000	1571200000	817140000	754070000	888370000	531320000	357050000	53975	1693	50848	326519;326520;326521;326522;326523;326524;326525;326526;326527	439889;439890;439891;439892;439893;439894;439895;439896	439893			8	
VFGHSSGPMVEK	1	Unmodified	1273.6125	0.61250714	3409	Q8IVP5	FUNDC1	FUN14 domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.442	20.443	3	0.0011438	16632	160511_QHF_FH_JSI12i_3	62.732	51.975			1.1339	1.1051	31.921	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4697	1.3849	NaN	1	0	Median	0.87476	0.88181	NaN	1	1	Median	294360000	154290000	140080000	0	0	0	0	0	0	144320000	70522000	73796000	150050000	83764000	66282000	53976	3409	50849	326528;326529	439897;439898	439898			2	
VFGIQLK	1	Unmodified	803.49052	0.49052473	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	52.796	52.561	2	0.019072	45072	160511_QHF_FH_JSI12i_3	53.71	25.181			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53977	5436	50850	326530	439899	439899			1	
VFGNEIK	1	Unmodified	805.4334	0.43340378	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			22.043	21.196	2	0.056414	18397	160511_QHF_FH_JSI10i_2	41.652	1.5492			1.1143	1.3381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1143	1.3381	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2461600000	1326800000	1134900000	0	0	0	2461600000	1326800000	1134900000	0	0	0	0	0	0	53978	1154	50851	326531	439900	439900			1	
VFGNEIKLEK	2	Acetyl (K)	1217.6656	0.66558856	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			61.086	50.386	2	0.011448	27657	160513_QHF_FH_JSI10Kac_4	58.889	42.926			1.065	1.2773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.065	1.2773	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28307000	12756000	15551000	0	0	0	28307000	12756000	15551000	0	0	0	0	0	0	53979	1154	50852	326532	439901	439901	1024		1	
VFGNEIKLEK	2	Unmodified	1175.655	0.65502388	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	39.022	38.613	3	0.00071918	32689	160511_QHF_FH_JSI12i_3	57.019	33.643			0.95427	0.95623	15.932	3	1	Plateau	0.80303	0.71301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.87709	0.802	NaN	1	0	Median	0.95795	0.97727	NaN	1	0	Median	464500000	225760000	238740000	46329000	18769000	27560000	0	0	0	92724000	47904000	44820000	325450000	159080000	166360000	53980	1154	50852	326533;326534;326535	439902;439903;439904	439903			3	
VFGPGIEGK	1	Unmodified	902.48617	0.48616764	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.632	1	3	1								2	2	1	32.394	31.875	2	0.0079801	27032	160511_QHF_FH_JSI11i_2	52.786	21.482			0.59419	0.58597	25.081	5	3	Median	NaN	NaN	NaN	0	0	Median	0.37606	0.46042	32.875	2	2	Median	0.63564	0.63428	11.204	2	1	Median	0.65523	0.65239	NaN	1	0	Median	804520000	488290000	316220000	0	0	0	230980000	159580000	71392000	512750000	296110000	216640000	60791000	32596000	28195000	53981	512	50853	326536;326537;326538;326539;326540	439905;439906;439907;439908;439909;439910	439907			6	
VFGPGVER	0	Unmodified	859.4552	0.45520186	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	23.611	22.963	2	0.0020959	19022	160511_QHF_FH_JSI12i_3	82.671	55.709			1.0883	1.0253	10.229	4	0	Linear	1.6091	1.2988	NaN	1	0	Median	0.98374	1.1183	NaN	1	0	Median	1.143	1.0592	NaN	1	0	Median	1.0363	1.0341	NaN	1	0	Median	1807800000	951920000	855920000	59438000	24808000	34630000	166310000	93507000	72800000	716710000	374530000	342180000	865380000	459070000	406300000	53982	512	50854	326541;326542;326543;326544	439911;439912	439912			2	
VFGPTIVAHAVPNPDPVTMLQDIK	1	Unmodified	2558.3567	0.35668037	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.98	100.99	3	2.0353E-34	87589	160511_QHF_FH_JSI12i_3	173.47	153.58			0.91197	0.90119	32.939	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.1375	NaN	1	0	Median	0.69003	0.71395	NaN	1	0	Median	783880000	429120000	354760000	0	0	0	0	0	0	273900000	133320000	140580000	509980000	295800000	214180000	53983	4634	50855	326545;326546	439913;439914;439915;439916	439915			4	
VFGSCPR	0	Unmodified	821.38541	0.38540773	696	O95456	PSMG1	Proteasome assembly chaperone 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	11.662	11.461	2	0.049359	9041	160511_QHF_FH_JSI11i_3	43	25.233			1.0607	0.96332	7.5446	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8364	0.96332	NaN	1	0	Median	0.99741	0.9348	NaN	1	0	Median	1.1009	1.0786	NaN	1	0	Median	300000000	148690000	151310000	0	0	0	52201000	28002000	24199000	119080000	59415000	59668000	128720000	61276000	67440000	53984	696	50856	326547;326548;326549	439917	439917			1	
VFGTHLMQDMVK	1	Unmodified	1404.6894	0.68937725	3001	Q5VZE5	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			59.682	58.15	3	0.0012766	47603	160511_QHF_FH_JSI9i_3	53.448	41.756			1.307	1.2683	17.783	2	0	Median	1.3563	1.1184	NaN	1	0	Median	1.2595	1.4383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67676000	26893000	40783000	32129000	11978000	20151000	35546000	14915000	20632000	0	0	0	0	0	0	53985	3001	50857	326550;326551	439918	439918			1	
VFGVDDNQDYNRPVINEK	1	Unmodified	2121.0127	0.012696536	2928	Q5SW79	CEP170	Centrosomal protein of 170 kDa	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		2	1								1	1	1	49.02	48.446	3	0.0003851	41394	160511_QHF_FH_JSI12i_3	56.215	47.168			1.0576	1.0598	18.031	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.95934	1.1924	NaN	1	1	Median	1.4542	1.5101	NaN	1	1	Median	1.0576	1.0598	NaN	1	0	Median	102370000	48751000	53621000	0	0	0	27885000	15025000	12860000	21567000	7555500	14012000	52920000	26171000	26749000	53986	2928	50858	326552;326553;326554	439919;439920;439921	439921			3	
VFGVHYFNIFNTVTLK	1	Unmodified	1898.0091	0.0090551289	1817	P54132	BLM	Bloom syndrome protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.395	81.1	3	1.568E-43	46654	160513_QHF_FH_JSI10Kac_6	175.45	164.98			1.1123	1.0804	10.002	4	1	Median	1.2206	1.0647	NaN	1	0	Median	0.76603	0.91515	NaN	1	0	Median	1.202	1.1552	NaN	1	1	Median	1.0292	1.0963	NaN	1	0	Median	1660100000	856770000	803350000	343280000	162860000	180420000	625880000	350670000	275210000	521110000	261070000	260040000	169850000	82173000	87680000	53987	1817	50859	326555;326556;326557;326558	439922;439923;439924;439925;439926;439927	439926			6	
VFGWVHR	0	Unmodified	899.47661	0.476606	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	43.271	34.091	2;3	0.0020356	18687	160513_QHF_FH_JSI10Kac_6	75.311	60.535			0.86182	0.95126	33.755	6	0	Median	0.49293	0.42995	NaN	1	0	Median	0.86182	1.0231	4.9504	2	0	Median	0.96338	0.94421	8.0314	2	0	Median	0.8268	0.91598	NaN	1	0	Median	148290000	77906000	70380000	2024300	1293000	731320	113330000	60023000	53305000	18832000	9890000	8942400	14101000	6700200	7401000	53988	375	50860	326559;326560;326561;326562;326563;326564	439928;439929;439930;439931;439932;439933;439934	439931			7	
VFHAGFGVVLGEDK	1	Unmodified	1473.7616	0.76161421	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	4.97		3	7						2	3	3	2	4	63.828	63.11	2;3	5.0008E-05	51511	160511_QHF_FH_JSI9i_3	76.533	62.871			0.92235	0.95024	19.342	8	3	Median	1.2537	1.0518	16.192	2	1	Median	0.79571	0.95067	8.7548	2	0	Median	0.92894	0.87914	NaN	1	0	Median	0.91581	0.96261	28.628	3	2	Median	739590000	357560000	382030000	59124000	24316000	34808000	57599000	30470000	27129000	15799000	9680400	6118300	607070000	293100000	313970000	53989	1818	50861	326565;326566;326567;326568;326569;326570;326571;326572;326573;326574;326575;326576	439935;439936;439937;439938;439939;439940;439941;439942;439943;439944;439945;439946;439947;439948;439949	439939			14	
VFHGADSDIEWLQK	1	Unmodified	1643.7944	0.79437091	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	60.125	59.729	2;3	7.8653E-05	51423	160511_QHF_FH_JSI12i_3	100.19	89.132			0.86561	0.82436	32.19	6	2	Median	0.92245	0.81379	NaN	1	0	Median	0.52184	0.63067	NaN	1	0	Median	1.318	1.2457	29.45	2	1	Median	0.74363	0.75096	15.016	2	1	Median	674780000	351930000	322860000	27644000	10706000	16938000	55743000	33499000	22244000	232930000	90524000	142410000	358460000	217200000	141270000	53990	2175	50862	326577;326578;326579;326580;326581;326582	439950;439951;439952;439953;439954;439955	439955			6	
VFHLLGVDTLVVTNAAGGLNPK	1	Unmodified	2234.2423	0.24230254	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.61		4	6						7	6	4	5	2	93.371	89.941	3;4	1.4E-60	43443	160513_QHF_FH_JSI9Kac_6	201.12	192.28			1.0216	0.97623	35.873	17	1	Median	1.2959	1.078	57.449	6	1	Median	0.80589	0.94486	8.1144	4	0	Median	1.0024	0.91905	4.8694	5	0	Median	1.1105	1.1526	3.9963	2	0	Median	4067200000	1982100000	2085100000	1379500000	542410000	837130000	1478300000	821030000	657290000	681550000	350580000	330970000	527770000	268040000	259720000	53991	771	50863	326583;326584;326585;326586;326587;326588;326589;326590;326591;326592;326593;326594;326595;326596;326597;326598;326599	439956;439957;439958;439959;439960;439961;439962;439963;439964;439965;439966;439967;439968;439969;439970;439971;439972;439973;439974;439975;439976;439977;439978;439979;439980;439981;439982;439983;439984;439985;439986	439979			30	
VFHLPTTTFIGGQESALPLR	0	Unmodified	2183.1739	0.17388863	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	92.789	92.108	3	7.594E-19	76869	160511_QHF_FH_JSI10i_3	156.13	151.04			0.84352	0.98341	10.919	3	0	Plateau	1.2213	0.98341	NaN	1	0	Median	0.78646	0.88204	NaN	1	0	Median	0.84352	0.79048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	427890000	229120000	198770000	176410000	86161000	90250000	132680000	74483000	58197000	118800000	68479000	50319000	0	0	0	53992	2185	50864	326600;326601;326602;326603	439987;439988;439989;439990;439991;439992;439993;439994;439995;439996	439991			10	
VFHYFESNSEPTTWASIIR	0	Unmodified	2283.096	0.096032235	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	2	1	84.368	78.677	3	1.5423E-08	40424	160513_QHF_FH_JSI9Kac_6	103.88	94.319			0.9291	0.91491	13.343	6	0	Median	1.0205	0.86266	10.762	2	0	Median	0.74104	0.88963	NaN	1	0	Median	1.0892	1.0356	19.964	2	0	Median	0.92973	0.97104	NaN	1	0	Median	276410000	149840000	126570000	79773000	42486000	37287000	95438000	57753000	37685000	66988000	33214000	33773000	34214000	16392000	17822000	53993	2229	50865	326604;326605;326606;326607;326608;326609	439997;439998;439999;440000;440001;440002;440003;440004	440001			8	
VFIEDVSR	0	Unmodified	963.50255	0.50254598	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6	4	4	5				3	4		4	5	6	5	42.934	38.619	2	1.235E-10	20646	160513_QHF_FH_JSI9Kac_5	152.47	58.063			0.91969	0.95155	13.537	19	1	Median	1.3935	1.1538	6.6753	4	0	Median	0.8952	1.0746	14.297	5	0	Median	0.92137	0.91817	4.6873	5	1	Median	0.81821	0.89623	10.791	5	0	Median	19342000000	9886500000	9456000000	3392500000	1380500000	2012000000	5137600000	2665500000	2472100000	6911700000	3708800000	3203000000	3900600000	2131700000	1768900000	53994	779	50866	326610;326611;326612;326613;326614;326615;326616;326617;326618;326619;326620;326621;326622;326623;326624;326625;326626;326627;326628;326629	440005;440006;440007;440008;440009;440010;440011;440012;440013;440014;440015;440016;440017;440018;440019;440020;440021;440022;440023;440024;440025;440026;440027;440028;440029;440030;440031;440032;440033;440034;440035;440036;440037;440038;440039;440040;440041	440016			37	
VFIEDVSREFVEEFIWPAIQSSALYEDR	0	Unmodified	3373.6507	0.65067337	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			100.8	93.356	3;4	3.0607E-20	52978	160513_QHF_FH_JSI9Kac_6	116.35	110.38			1.5604	1.5949	5.5276	2	0	Median	1.7738	1.5338	NaN	1	0	Median	1.3727	1.6585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	341850000	131250000	210600000	68319000	20280000	48039000	273530000	110970000	162560000	0	0	0	0	0	0	53995	779	50867	326630;326631	440042;440043	440042			2	
VFIGEFAYTYAAMYDK	1	Unmodified	1887.8753	0.87532334	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.81	6.16		7	5	4	1				9	5	5	10	6	95.671	91.083	2;3	4.5903E-88	45809	160513_QHF_FH_JSI11Kac_6	260.81	226.06			0.96753	0.93435	13.922	24	7	Median	1.1562	0.96904	11.748	5	3	Median	0.83411	0.99602	9.7872	5	0	Median	0.93619	0.8974	15.882	9	4	Median	0.84439	0.89547	18.471	5	0	Median	3767300000	1949800000	1817500000	735420000	351000000	384430000	958660000	520150000	438510000	1188100000	594270000	593780000	885200000	484420000	400790000	53996	1080	50868	326632;326633;326634;326635;326636;326637;326638;326639;326640;326641;326642;326643;326644;326645;326646;326647;326648;326649;326650;326651;326652;326653;326654;326655;326656;326657	440044;440045;440046;440047;440048;440049;440050;440051;440052;440053;440054;440055;440056;440057;440058;440059;440060;440061;440062;440063;440064;440065;440066;440067;440068;440069;440070;440071;440072;440073;440074;440075;440076;440077;440078;440079;440080;440081;440082;440083;440084;440085;440086;440087;440088;440089	440057			46	
VFIGEFAYTYAAMYDK	1	Oxidation (M)	1903.8702	0.87023797	1080	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	1.86				1					5	2	1	1	2	87.302	78.429	2;3	3.2239E-22	41729	160513_QHF_FH_JSI12Kac_6	147.87	133.96			0.97402	1.0454	44.461	5	2	Median	1.1736	1.0079	29.105	2	1	Median	2.0375	2.2988	NaN	1	1	Median	0.75236	0.74867	NaN	1	0	Median	0.97402	1.0454	NaN	1	0	Median	261680000	125010000	136660000	132620000	59585000	73031000	1713600	466020	1247600	37624000	21117000	16508000	89722000	43845000	45877000	53997	1080	50868	326658;326659;326660;326661;326662;326663	440090;440091;440092;440093;440094;440095	440095		725	6	
VFIGNLNTALVK	1	Unmodified	1287.7551	0.75507227	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	2	2	2	3	75.816	73.067	2	2.0224E-05	64212	160511_QHF_FH_JSI12i_3	111.46	0			1.1018	1.0286	19.756	9	0	Median	1.2725	1.0672	13.974	2	0	Median	0.99924	1.2124	16.128	2	0	Median	1.2257	1.1654	18.451	2	0	Median	0.88329	0.94917	19.883	3	0	Median	1404500000	735000000	669540000	154760000	60493000	94272000	192720000	97305000	95417000	410540000	202260000	208280000	646510000	374940000	271570000	53998	5375	50869	326664;326665;326666;326667;326668;326669;326670;326671;326672	440096;440097;440098;440099;440100;440101;440102	440102			7	
VFIGNLNTLVVK	1	Unmodified	1315.7864	0.7863724	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.65	3	4	4					1		3	3	3	3	83.221	81.791	2	5.7513E-16	73757	160511_QHF_FH_JSI11i_3	161.76	127.51			1.0946	0.98567	21.235	12	0	Median	1.1918	0.99584	18.315	3	0	Median	1.0953	1.2977	6.9565	3	0	Plateau	0.93888	1.0166	10.961	3	0	Plateau	0.75069	0.8065	2.9945	3	0	Median	13284000000	6306100000	6978100000	1907700000	727750000	1179900000	2230900000	1086700000	1144200000	4132400000	1894600000	2237700000	5013300000	2597000000	2416300000	53999	882	50870	326673;326674;326675;326676;326677;326678;326679;326680;326681;326682;326683;326684	440103;440104;440105;440106;440107;440108;440109;440110;440111;440112;440113;440114;440115;440116;440117;440118;440119;440120;440121;440122;440123;440124;440125;440126;440127;440128;440129;440130;440131;440132;440133	440105			31	
VFIGNLNTLVVKK	2	Unmodified	1443.8813	0.88133542	882	P07910;P0DMR1;O60812;B7ZW38;B2RXH8	HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.13	67.698	3	0.00079056	36068	160513_QHF_FH_JSI9Kac_6	70.68	61.392			0.91449	0.91944	29.192	4	4	Median	1.1304	0.95201	NaN	1	1	Median	0.73983	0.88798	NaN	1	1	Median	1.2714	1.2098	NaN	1	1	Median	0.54506	0.59882	NaN	1	1	Median	191480000	103340000	88131000	57599000	27938000	29661000	93795000	55259000	38536000	29415000	13620000	15795000	10666000	6526800	4139300	54000	882	50871	326685;326686;326687;326688	440134;440135;440136;440137	440135			4	
VFIIKSYSEDDIHR	1	Acetyl (K)	1762.889	0.88899957	3291;5654;4548	Q7Z739;Q9BYJ9;Q9Y5A9	YTHDF3;YTHDF1;YTHDF2	YTH domain-containing family protein 3;YTH domain-containing family protein 1;YTH domain-containing family protein 2	no	no	1	0	0	1			By MS/MS		16	0									1			1		71.639	62.22	3	8.8552E-05	33720	160513_QHF_FH_JSI11Kac_6	107.46	86.659			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13706000	13706000	0	0	0	0	0	0	0	13706000	13706000	0	0	0	0	54001	3291;4548;5654	50872	326689	440138	440138	2828		1	
VFIMDNCEELIPEYLNFIR	0	Unmodified	2414.165	0.16503978	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	102.28	102.18	2;3	9.9101E-33	88082	160511_QHF_FH_JSI12i_2	271.73	246.01			1.2375	1.3749	27.763	5	1	Median	0.91275	0.78335	NaN	1	0	Median	1.2877	1.5772	NaN	1	0	Median	1.0586	1.0949	NaN	1	0	Median	1.2506	1.3908	1.6209	2	1	Median	1169100000	510100000	658990000	86618000	42695000	43923000	129820000	57776000	72039000	690650000	306040000	384610000	262000000	103590000	158410000	54002	880	50873	326690;326691;326692;326693;326694;326695	440139;440140;440141;440142;440143	440141			5	
VFIMDSCDELIPEYLNFIR	0	Unmodified	2373.1385	0.13849068	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				102.36	102.29	2	0.00055978	90160	160511_QHF_FH_JSI9i_2	97.463	77.082			1.3749	1.1947	NaN	1	1	Median	1.3749	1.1947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105730000	37401000	68331000	105730000	37401000	68331000	0	0	0	0	0	0	0	0	0	54003	898	50874	326696	440144	440144			1	
VFIPHGLIMDR	0	Unmodified	1296.7013	0.70126256	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.06		1	8						4	3	4	3	3	67.952	64.689	2;3	3.1601E-05	57401	160511_QHF_FH_JSI11i_3	82.171	57.879			0.95275	0.93371	18.861	13	2	Median	1.1608	0.92525	9.8088	3	0	Plateau	0.74593	0.90654	14.743	4	0	Median	1.056	1.0383	3.338	3	1	Median	0.81888	0.86853	28.553	3	1	Median	3543100000	1694100000	1849000000	731570000	310520000	421050000	563390000	299550000	263850000	1719100000	804090000	914990000	529080000	279950000	249120000	54004	772	50875	326697;326698;326699;326700;326701;326702;326703;326704;326705;326706;326707;326708;326709	440145;440146;440147;440148;440149;440150;440151;440152;440153;440154;440155;440156;440157;440158;440159;440160;440161;440162;440163;440164;440165	440145			21	
VFIPHGLIMDR	0	Oxidation (M)	1312.6962	0.69617719	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			58.082	56.539	3	0.0013091	46461	160511_QHF_FH_JSI9i_3	54.259	38.503			0.92755	0.90281	3.0371	2	0	Median	1.1259	0.92241	NaN	1	0	Median	0.76411	0.88363	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	168730000	89934000	78793000	98208000	50111000	48097000	70520000	39823000	30696000	0	0	0	0	0	0	54005	772	50875	326710;326711	440166;440167;440168	440168		278	3	
VFITDDFHDMMPK	1	Unmodified	1594.716	0.71598593	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.24	4.83	1	11	6						3	6	4	6	5	78.729	76.656	2;3	1.7168E-10	67127	160511_QHF_FH_JSI12i_2	175.86	162.51			1.0706	1.0601	14.997	20	6	Median	1.1368	0.97312	18.738	6	2	Median	0.76895	0.92174	16.803	4	2	Median	1.0819	1.0837	6.5439	6	2	Median	1.0346	1.096	4.3707	4	0	Median	7404700000	3784300000	3620400000	1068900000	503440000	565470000	1671400000	929030000	742370000	2954600000	1468200000	1486400000	1709800000	883560000	826200000	54006	1057	50876	326712;326713;326714;326715;326716;326717;326718;326719;326720;326721;326722;326723;326724;326725;326726;326727;326728;326729;326730;326731;326732	440169;440170;440171;440172;440173;440174;440175;440176;440177;440178;440179;440180;440181;440182;440183;440184;440185;440186;440187;440188;440189;440190;440191;440192;440193;440194;440195;440196;440197;440198;440199;440200;440201;440202;440203;440204;440205;440206;440207;440208;440209;440210;440211;440212;440213;440214;440215;440216;440217;440218;440219;440220	440179			52	
VFITDDFHDMMPK	1	Oxidation (M)	1610.7109	0.71090055	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							3	1	1	2	64.55	63.418	3	0.0015797	56701	160511_QHF_FH_JSI10i_2	53.377	51.891			1.112	1.1247	18.017	7	4	Median	1.1793	1.0235	25.761	3	3	Median	0.81159	1.0024	NaN	1	0	Median	1.112	1.1247	NaN	1	0	Median	1.1457	1.2712	13.069	2	1	Median	689580000	351080000	338500000	143140000	62216000	80920000	100870000	68911000	31957000	128060000	66491000	61571000	317510000	153460000	164050000	54007	1057	50876	326733;326734;326735;326736;326737;326738;326739	440221;440222;440223;440224;440225;440226;440227;440228;440229;440230	440230		690;691	10	
VFITDDFHDMMPKYLNFVK	2	Acetyl (K);Oxidation (M)	2417.1436	0.14357605	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	1	1			By MS/MS		16	0									2			2		90.773	81.418	3	0.00069054	45718	160513_QHF_FH_JSI11Kac_6	62.203	47.893			0.3756	0.35416	73.837	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3756	0.35416	73.837	2	1	Median	NaN	NaN	NaN	0	0	Median	235770000	160820000	74947000	0	0	0	0	0	0	235770000	160820000	74947000	0	0	0	54008	1057	50877	326740;326741	440231;440232	440231	894	690;691	2	
VFITDDFHDMMPKYLNFVK	2	Acetyl (K)	2401.1487	0.14866143	1057	P14625	HSP90B1	Endoplasmin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		95.157	87.597	3	6.918E-10	48746	160513_QHF_FH_JSI11Kac_6	116.13	100.37			0.63638	0.67232	146.63	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6314	1.8962	NaN	1	0	Median	0.24824	0.23838	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	623380000	465440000	157940000	0	0	0	81123000	34056000	47067000	542260000	431390000	110880000	0	0	0	54009	1057	50877	326742;326743	440233;440234;440235	440233	894		3	
VFIWTCDDASSNTWSPK	1	Unmodified	2012.8938	0.89382695	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.979	79.738	2	5.06E-31	69166	160511_QHF_FH_JSI12i_3	195.88	173.35			0.79894	0.75089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79894	0.75089	NaN	1	0	Median	32205000	17349000	14856000	0	0	0	0	0	0	0	0	0	32205000	17349000	14856000	54010	1860	50878	326744	440236;440237	440236			2	
VFIYFSHLR	0	Unmodified	1180.6393	0.63931423	5404	Q9ULM2	ZNF490	Zinc finger protein 490	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.525	62.707	3	3.1735E-05	34109	160513_QHF_FH_JSI11Kac_6	104.2	85.528			1.1582	1.0855	25.92	4	1	Median	1.367	1.172	NaN	1	1	Median	0.6471	0.74855	NaN	1	0	Median	1.3825	1.3759	NaN	1	0	Median	0.98128	1.0054	NaN	1	0	Median	129400000	64505000	64893000	20219000	9691900	10527000	52266000	29399000	22867000	37606000	15837000	21769000	19307000	9577100	9730200	54011	5404	50879	326745;326746;326747;326748	440238;440239;440240;440241;440242;440243	440238			6	
VFLALAAK	1	Unmodified	831.52182	0.52182486	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	61.01	55.374	2	0.0057109	46021	160511_QHF_FH_JSI10i_3	64.803	55.054			0.95307	0.96637	12.354	9	0	Median	1.0409	0.84084	12.122	3	0	Median	0.87082	1.004	5.3957	2	0	Median	1.1715	1.125	4.3187	2	0	Median	0.90967	0.94912	0.98058	2	0	Median	3464700000	1790500000	1674200000	840660000	416490000	424170000	816560000	417560000	399000000	757690000	377520000	380170000	1049800000	578900000	470870000	54012	2094	50880	326749;326750;326751;326752;326753;326754;326755;326756;326757	440244;440245;440246;440247;440248;440249;440250;440251;440252;440253;440254;440255;440256	440247			13	
VFLAQKMMIGR	1	Acetyl (K);2 Oxidation (M)	1366.7101	0.71011269	1055	P14618	PKM	Pyruvate kinase PKM	no	no	1	0	2	1			By MS/MS		16	0									1			1		59.497	49.778	2	0.046982	26902	160513_QHF_FH_JSI11Kac_6	38.086	19.775			0.7271	0.70139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7271	0.70139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5400700	4624400	776360	0	0	0	0	0	0	5400700	4624400	776360	0	0	0	54013	1055	50881	326758	440257	440257			1	
VFLATNSDYK	1	Unmodified	1156.5764	0.57643921	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	39.794	38.937	2	0.0003122	34182	160511_QHF_FH_JSI10i_2	90.629	63.514			1.0555	0.95441	35.367	5	3	Median	1.1274	0.95441	NaN	1	0	Median	0.58567	0.72506	NaN	1	1	Median	0.9436	0.95382	62.041	2	2	Median	1.0555	1.1686	NaN	1	0	Median	501340000	283980000	217360000	67080000	36041000	31038000	79332000	49389000	29942000	254710000	146210000	108500000	100220000	52345000	47879000	54014	1690	50882	326759;326760;326761;326762;326763	440258;440259;440260;440261;440262	440262			5	
VFLAVFVEQPTPFLPR	0	Unmodified	1859.0345	0.034541598	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.212	87.805	2	6.5351E-63	52063	160513_QHF_FH_JSI10Kac_6	208.74	185.51			0.92122	0.98288	14.405	4	0	Median	1.4137	1.1859	NaN	1	0	Median	0.80732	0.9583	NaN	1	0	Median	1.0512	1.0081	NaN	1	0	Median	0.80137	0.83682	NaN	1	0	Median	763640000	399650000	363980000	181360000	86757000	94601000	206080000	119380000	86706000	253110000	122190000	130930000	123080000	71331000	51751000	54015	430	50883	326764;326765;326766;326767	440263;440264;440265;440266;440267;440268	440268			6	
VFLDFFTYAPPK	1	Unmodified	1443.7438	0.74383889	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			1	2	91.362	81.947	2;3	9.1321E-05	45989	160513_QHF_FH_JSI11Kac_6	99.53	75.441			1.6142	1.7416	41.963	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4756	1.4482	NaN	1	1	Median	1.0787	1.1667	56.659	2	1	Median	112470000	39770000	72699000	0	0	0	0	0	0	42780000	15839000	26940000	69689000	23930000	45759000	54016	2666	50884	326768;326769;326770	440269;440270;440271	440269			3	
VFLDPNILSDDGTVALR	0	Unmodified	1843.968	0.96797818	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	4	8								2	4	3	3	97.897	97.738	2;3	1.8671E-15	84122	160511_QHF_FH_JSI12i_2	158.58	126.51			1.0222	1.0805	20.924	12	1	Median	1.4286	1.2148	20.323	2	0	Median	0.7421	0.88821	20.037	4	1	Linear	1.1469	1.1385	30.025	3	0	Median	0.98498	1.0655	19.162	3	0	Plateau	303920000	147970000	155950000	41406000	18624000	22782000	99631000	53116000	46515000	75028000	33133000	41895000	87859000	43100000	44758000	54017	1615	50885	326771;326772;326773;326774;326775;326776;326777;326778;326779;326780;326781;326782	440272;440273;440274;440275;440276;440277;440278;440279;440280;440281;440282;440283;440284;440285;440286;440287;440288;440289;440290;440291;440292;440293	440275			22	
VFLDVLMK	1	Unmodified	963.54633	0.54632505	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	80.334	79.156	2	0.0050073	68426	160511_QHF_FH_JSI12i_2	65.038	39.301			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54018	2561	50886	326783	440294	440294			1	
VFLEDTGQDFPLMPNEESSLPAVEK	1	Unmodified	2791.3262	0.32622768	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	100.8	100.65	3	6.3134E-09	91288	160511_QHF_FH_JSI12i_1	87.511	80.318			0.62109	0.63722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62109	0.63722	NaN	1	1	Median	34108000	19242000	14866000	0	0	0	0	0	0	0	0	0	34108000	19242000	14866000	54019	2574	50887	326784	440295	440295			1	
VFLEELMAPVASIWLSQDMHR	0	Unmodified	2471.2341	0.2341224	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.5	0.5		1	1							1			1	102.92	102.89	3	9.4112E-06	89565	160511_QHF_FH_JSI12i_3	83.251	53.007			0.75082	0.7227	30.285	2	2	Median	0.99328	0.89529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56755	0.58339	NaN	1	1	Median	330320000	217280000	113040000	47882000	17698000	30183000	0	0	0	0	0	0	282440000	199580000	82855000	54020	4831	50888	326785;326786	440296;440297	440297			2	
VFLENVIR	0	Unmodified	988.57057	0.57056597	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	61.2	60.344	2	0.0004388	52084	160511_QHF_FH_JSI12i_3	108.24	58.879			1.2962	1.1875	33.221	7	1	Median	1.3276	1.0504	NaN	1	0	Median	1.5316	1.7976	20.729	2	1	Median	1.0903	1.0717	14.507	2	0	Median	0.9455	0.99841	40.188	2	0	Median	7789100000	3547900000	4241100000	165340000	61476000	103870000	1788900000	726980000	1062000000	2904000000	1380000000	1523900000	2930800000	1379400000	1551400000	54021	2019	50889	326787;326788;326789;326790;326791;326792;326793	440298;440299;440300;440301;440302;440303;440304;440305;440306;440307;440308;440309	440309			12	
VFLENVIRDAVTYTEHAK	1	Unmodified	2104.0953	0.095303954	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			100.42	100.23	4	0.021624	82537	160511_QHF_FH_JSI10i_3	54.974	40.719			1.8746	1.8126	78.383	2	0	Median	1.2475	1.0413	NaN	1	0	Median	2.8168	3.1551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39528000	12208000	27321000	19419000	6980700	12438000	20110000	5227000	14883000	0	0	0	0	0	0	54022	2019	50890	326794;326795	440310	440310			0	
VFLGNVETFIK	1	Unmodified	1265.702	0.70197407	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	3	2	2	84.743	84.147	2	4.5008E-05	72820	160511_QHF_FH_JSI12i_3	96.331	74.094			0.8629	0.91129	22.828	8	3	Median	0.82726	0.70077	7.6418	2	2	Median	0.75291	0.87887	10.174	2	1	Median	1.0082	0.98334	15.813	2	0	Median	1.1172	1.1916	16.9	2	0	Median	589260000	306610000	282650000	118730000	69286000	49446000	115860000	68824000	47037000	178380000	88910000	89472000	176290000	79594000	96692000	54023	648	50891	326796;326797;326798;326799;326800;326801;326802;326803;326804	440311;440312;440313;440314;440315;440316;440317;440318;440319	440319			9	
VFLHLADIYAK	1	Unmodified	1288.718	0.71795849	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	2	1	72.204	68.269	3	4.191E-05	61392	160511_QHF_FH_JSI11i_3	82.171	75.283			0.97692	1.0756	11.758	5	0	Median	1.2341	1.0756	NaN	1	0	Median	0.96524	1.1446	NaN	1	0	Median	1.1008	1.0605	18.724	2	0	Median	0.95216	0.94061	NaN	1	0	Median	291580000	155500000	136080000	9523800	5035700	4488000	55872000	29338000	26534000	99905000	51294000	48611000	126280000	69832000	56446000	54024	2564	50892	326805;326806;326807;326808;326809	440320;440321;440322;440323;440324;440325;440326;440327;440328	440320			8	
VFLISASSK	1	Unmodified	950.54368	0.54368251	4759	Q9H6Z4	RANBP3	Ran-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	50.734	45.638	2	0.00014605	38212	160511_QHF_FH_JSI10i_3	89.698	40.34			0.95015	1.0036	18.934	8	1	Median	1.3863	1.1564	32.968	2	1	Median	0.84874	1.0036	1.3484	2	0	Median	1.0094	0.9499	25.298	2	0	Median	0.96111	1.0163	19.098	2	0	Median	1650500000	719540000	930960000	298670000	120570000	178100000	325850000	142940000	182910000	421450000	185630000	235820000	604530000	270400000	334130000	54025	4759	50893	326810;326811;326812;326813;326814;326815;326816;326817	440329;440330;440331;440332;440333;440334;440335;440336;440337;440338	440332			10	
VFLIWAVTHSVK	1	Unmodified	1398.8024	0.80235682	3170	Q6Y1H2	HACD2	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	3	1	83.883	75.282	2;3	1.4767E-09	41466	160513_QHF_FH_JSI11Kac_6	117.86	88.561			0.97635	1.0127	58.047	6	2	Median	0.82484	0.72077	NaN	1	0	Median	0.94485	1.1287	NaN	1	0	Median	1.0089	0.95935	82.833	3	2	Median	1.0165	1.0691	NaN	1	0	Median	1489800000	646780000	843050000	339320000	160160000	179160000	421780000	217070000	204710000	535200000	196840000	338360000	193530000	72715000	120820000	54026	3170	50894	326818;326819;326820;326821;326822;326823	440339;440340;440341;440342;440343;440344;440345;440346;440347;440348	440340			10	
VFLLFDKAK	2	Acetyl (K)	1121.6485	0.64848194	5797				yes	yes	1	0	0	1		By MS/MS			16	0									1		1			90.996	85.276	2	0.019765	48578	160513_QHF_FH_JSI10Kac_6	63.419	36.817	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21629000	21629000	0	0	0	0	21629000	21629000	0	0	0	0	0	0	0	54027	5797	50895	326824	440349	440349	3564		1	
VFLLGEEVAQYDGAYK	1	Unmodified	1800.8934	0.89341625	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.493	2	9	1							3	3	4	2	86.492	85.911	2;3	3.3655E-65	75489	160511_QHF_FH_JSI11i_2	226.73	211.19			0.98962	0.99952	18.574	11	4	Median	1.1681	0.99952	12.087	3	2	Median	0.90691	1.1205	34.812	3	1	Plateau	0.9292	0.93062	4.96	3	1	Median	1.0175	1.131	4.3439	2	0	Median	1144400000	590800000	553600000	222400000	106550000	115840000	282380000	152450000	129930000	424270000	220510000	203760000	215350000	111290000	104060000	54028	990	50896	326825;326826;326827;326828;326829;326830;326831;326832;326833;326834;326835;326836	440350;440351;440352;440353;440354;440355;440356;440357;440358;440359;440360;440361;440362;440363;440364;440365;440366;440367;440368;440369;440370;440371;440372;440373;440374;440375;440376;440377;440378;440379;440380	440369			31	
VFLLTFIR	0	Unmodified	1007.6168	0.61678788	468	O75051	PLXNA2	Plexin-A2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			87.839	82.121	2	0.0006976	46380	160513_QHF_FH_JSI10Kac_6	107.67	98.901			0.70098	0.84101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70098	0.84101	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	142150000	77682000	64469000	0	0	0	142150000	77682000	64469000	0	0	0	0	0	0	54029	468	50897	326837	440381;440382	440382			2	
VFLMSESEK	1	Unmodified	1068.5161	0.51614714	4449	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		40.719	40.137	2	0.0019789	35381	160511_QHF_FH_JSI10i_2	66.692	45.392			0.93376	1.13	17.731	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.93376	1.13	NaN	1	0	Median	0.97654	0.95766	21.125	2	1	Median	NaN	NaN	NaN	0	0	Median	389190000	213680000	175510000	0	0	0	116290000	66953000	49333000	272900000	146730000	126170000	0	0	0	54030	4449	50898	326838;326839;326840	440383;440384;440385	440385			3	
VFLNGNKLPVK	2	Unmodified	1227.7339	0.7339429	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.443	43.865	3	0.051596	36611	160511_QHF_FH_JSI10i_3	30.872	17.781			0.72638	0.69963	7.6497	2	2	Median	0.92605	0.73852	NaN	1	1	Median	0.56976	0.66279	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86622000	46549000	40073000	49250000	26202000	23049000	37372000	20348000	17024000	0	0	0	0	0	0	54031	999	50899	326841;326842	440386;440387	440386			2	
VFLNILPPLTNSK	1	Unmodified	1454.8497	0.84970094	4507	Q9BX10	GTPBP2	GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	96.309	96.102	2;3	5.8991E-05	85442	160511_QHF_FH_JSI11i_3	107.83	81.233			1.1436	0.93816	20.487	6	2	Linear	1.3397	1.1394	NaN	1	0	Median	0.99175	1.1345	NaN	1	0	Median	1.4002	1.354	32.487	2	1	Median	1.0713	1.0799	21.934	2	1	Median	84107000	39947000	44160000	9883900	3689500	6194400	14380000	7297600	7082000	21091000	10399000	10692000	38752000	18561000	20191000	54032	4507	50900	326843;326844;326845;326846;326847;326848	440388;440389;440390;440391;440392;440393;440394;440395	440388			7	
VFLPGFLSSNLYYK	1	Unmodified	1646.8708	0.87083031	342	O43572	AKAP10	A-kinase anchor protein 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.33	101.15	2	3.5329E-06	82031	160511_QHF_FH_JSI9i_3	121.9	93.694			2.4373	1.9823	NaN	1	1	Median	2.4373	1.9823	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79729000	19967000	59762000	79729000	19967000	59762000	0	0	0	0	0	0	0	0	0	54033	342	50901	326849	440396	440396			1	
VFLQDHCLAEGYGTK	1	Unmodified	1736.8192	0.81920545	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	37.462	37.006	3	3.4119E-05	40751	160511_QHF_FH_JSI12i_3	95.347	87.171			0.75998	0.72636	35.156	5	0	Median	1.1633	0.97976	NaN	1	0	Median	0.51121	0.63341	NaN	1	0	Median	0.75998	0.68338	NaN	1	0	Median	1.0196	1.0406	50.84	2	0	Median	495920000	255250000	240660000	64709000	26636000	38073000	79873000	50940000	28932000	52517000	28788000	23729000	298820000	148890000	149930000	54034	264	50902	326850;326851;326852;326853;326854	440397;440398;440399;440400;440401	440400			5	
VFLQGPAPVGTPSFNR	0	Unmodified	1685.8889	0.88893999	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			71.349	69.88	2	6.2506E-05	57431	160511_QHF_FH_JSI9i_3	91.961	78.055			1.2595	1.2185	3.5292	2	0	Median	1.5187	1.2493	NaN	1	0	Median	1.0445	1.1884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29580000	11714000	17866000	17609000	7121700	10487000	11971000	4592100	7379100	0	0	0	0	0	0	54035	3434	50903	326855;326856	440402;440403;440404	440404			3	
VFLQYLPAIR	0	Unmodified	1218.7125	0.71247918	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			3						1	1	1	1	1	84.309	81.333	2	8.0011E-05	68893	160511_QHF_FH_JSI9i_3	87.323	74.286			0.61298	0.63449	33.907	4	1	Median	1.1448	0.91516	NaN	1	0	Median	0.68158	0.78096	NaN	1	0	Median	0.55129	0.51549	NaN	1	0	Median	0.41163	0.44583	NaN	1	1	Median	199840000	116340000	83506000	53967000	23533000	30434000	47141000	28733000	18408000	77184000	49060000	28124000	21550000	15010000	6540100	54036	2531	50904	326857;326858;326859;326860	440405;440406;440407;440408;440409	440408			5	
VFLSGMPELR	0	Unmodified	1147.606	0.6059652	4524	Q9BXS5;Q9Y6Q5	AP1M1;AP1M2	AP-1 complex subunit mu-1;AP-1 complex subunit mu-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	71.207	70.467	2	1.848E-06	60977	160511_QHF_FH_JSI12i_3	111.95	94.562			0.78903	0.90752	14.456	6	0	Median	NaN	NaN	NaN	0	0	Median	0.76437	0.90752	2.1492	2	0	Median	0.90234	0.87919	12.903	2	0	Median	0.79501	0.84868	28.788	2	0	Median	1163000000	566300000	596700000	0	0	0	208970000	115370000	93597000	469090000	209980000	259110000	484940000	240940000	243990000	54037	4524	50905	326861;326862;326863;326864;326865;326866;326867;326868	440410;440411;440412;440413;440414;440415;440416;440417;440418;440419;440420;440421;440422	440422			13	
VFLSHYYLHVR	0	Unmodified	1432.7616	0.76155464	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	60.081	51.107	4	0.00044974	27815	160513_QHF_FH_JSI10Kac_6	73.781	63.171			1.0113	0.65968	36.168	4	1	Linear	1.6406	1.357	NaN	1	0	Median	0.66849	0.77747	11.521	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4013	1.5119	NaN	1	0	Median	40004000	22029000	17975000	5511600	2639300	2872300	30880000	18413000	12467000	0	0	0	3613000	976970	2636000	54038	3832	50906	326869;326870;326871;326872	440423;440424;440425;440426	440425			2	
VFLWGSFR	0	Unmodified	1010.5338	0.53378653	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.053	72.795	2	2.2519E-07	39201	160513_QHF_FH_JSI9Kac_6	144.83	114.12			1.0589	1.0723	6.9737	4	0	Median	1.4272	1.2105	NaN	1	0	Median	0.89935	1.0639	NaN	1	0	Median	1.1465	1.0808	NaN	1	0	Median	0.97804	1.0318	NaN	1	0	Median	2449800000	1194300000	1255500000	464670000	195820000	268840000	1328700000	699760000	628930000	399560000	171620000	227930000	256850000	127090000	129760000	54039	1145	50907	326873;326874;326875;326876	440427;440428;440429;440430;440431;440432;440433	440429			7	
VFMAHQDLR	0	Unmodified	1115.5546	0.55459833	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				25.871	24.531	3	0.021922	19844	160511_QHF_FH_JSI9i_3	26.043	13.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54040	4805	50908	326877	440434	440434			1	
VFMAHQDLRFPR	0	Unmodified	1515.7769	0.77688712	4805	Q9H9B1	EHMT1	Histone-lysine N-methyltransferase EHMT1	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	45.678	44.287	3	0.060135	37871	160511_QHF_FH_JSI12i_2	22.232	1.8049			0.50673	0.5628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50673	0.5628	NaN	1	1	Median	99601000	68997000	30605000	0	0	0	0	0	0	0	0	0	99601000	68997000	30605000	54041	4805	50909	326878	440435	440435			1	
VFMQEFK	1	Unmodified	927.45242	0.45242467	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	44.104	43.007	2	0.028298	37858	160511_QHF_FH_JSI10i_2	56.011	44.642			1.2413	1.1043	17.888	5	0	Median	1.4697	1.2302	15.278	2	0	Median	0.79382	0.98035	NaN	1	0	Median	1.2413	1.2983	NaN	1	0	Median	0.80057	0.90062	NaN	1	0	Median	1815500000	836460000	979050000	315260000	140470000	174790000	433370000	206470000	226900000	726350000	316340000	410010000	340520000	173170000	167340000	54042	256	50910	326879;326880;326881;326882;326883	440436;440437;440438;440439	440439			4	
VFMYYFDNPGGQIPSWLINWAAK	1	Unmodified	2716.3148	0.31481556	5373	Q9UKL6	PCTP	Phosphatidylcholine transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.633	91.206	3	7.8496E-14	51523	160513_QHF_FH_JSI9Kac_6	108.37	100.93			0.84458	0.84837	18.365	2	0	Median	0.87658	0.74505	NaN	1	0	Median	0.81375	0.96601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	311810000	169670000	142140000	94486000	54362000	40124000	217330000	115310000	102020000	0	0	0	0	0	0	54043	5373	50911	326884;326885	440440;440441	440440			2	
VFNDMKVR	1	Acetyl (K);Oxidation (M)	1065.5277	0.52771487	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.484							3	5			1	4	3	30.965	21.646	2	0.0039051	13193	160513_QHF_FH_JSI11Kac_5	77.923	60.074			0.35399	0.34989	42.477	8	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89993	1.071	NaN	1	0	Median	0.35937	0.35656	3.1236	4	0	Median	0.6177	0.66434	16.517	3	0	Median	222840000	159200000	63633000	0	0	0	9006600	4284700	4721900	175200000	129820000	45389000	38627000	25105000	13522000	54044	1236;5500	50912	326886;326887;326888;326889;326890;326891;326892;326893	440442;440443;440444;440445;440446	440445	1132	870	5	
VFNDMKVR	1	Acetyl (K)	1049.5328	0.53280025	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		44.07	33.927	2	0.019433	17616	160513_QHF_FH_JSI10Kac_5	68.214	25.091			0.0078252	0.0084742	66.528	2	2	Median	NaN	NaN	NaN	0	0	Median	0.011341	0.013564	NaN	1	1	Median	0.0053992	0.0052941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	155960000	155200000	757790	0	0	0	27081000	26827000	254230	128880000	128370000	503560	0	0	0	54045	1236;5500	50912	326894;326895	440447;440448	440448	1132		2	
VFNDMKVRK	2	Acetyl (K)	1177.6278	0.62776327	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	34.198	25.298	3	0.00038095	14186	160513_QHF_FH_JSI11Kac_6	99.688	64.967			0.7562	0.72116	50.909	4	0	Median	0.99163	0.83375	NaN	1	0	Median	1.0273	1.2062	NaN	1	0	Median	0.38407	0.36103	NaN	1	0	Median	0.57667	0.62377	NaN	1	0	Median	188630000	108910000	79715000	14791000	7652700	7138700	70465000	35212000	35252000	78058000	50951000	27107000	25313000	15096000	10217000	54046	1236;5500	50913	326896;326897;326898;326899	440449;440450;440451;440452;440453	440450	1132		4	
VFNDTCR	0	Unmodified	910.3967	0.3967007	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	1.8	0.4	1	4								1	1	2	1	10.156	9.7494	2	0.028298	7698	160511_QHF_FH_JSI10i_2	53.166	39.495			0.95934	1.1038	23.267	5	0	Median	1.3023	1.1038	NaN	1	0	Median	0.9324	1.1403	NaN	1	0	Median	0.86355	0.86991	12.573	2	0	Median	1.3254	1.4909	NaN	1	0	Median	670250000	341300000	328950000	71090000	33037000	38052000	136740000	74250000	62489000	304250000	161350000	142900000	158170000	72663000	85510000	54047	1544	50914	326900;326901;326902;326903;326904	440454	440454			1	
VFNDYTAVPDLYFENAMR	0	Unmodified	2163.9935	0.993541	1550	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	98.601	98.299	2	4.7727E-05	86152	160511_QHF_FH_JSI11i_2	81.431	66.745			1.39	1.4445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.39	1.4445	NaN	1	1	Median	5396400	2164200	3232100	0	0	0	0	0	0	0	0	0	5396400	2164200	3232100	54048	1550	50915	326905;326906	440455;440456	440456			2	
VFNETPINPR	0	Unmodified	1185.6142	0.6142217	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	37.811	37.148	2	2.6097E-05	32650	160511_QHF_FH_JSI11i_3	116.37	100.71			1.1565	1.1505	12.055	6	0	Median	1.4182	1.2343	NaN	1	0	Median	0.82462	1.0376	NaN	1	0	Median	1.1801	1.1505	9.6812	2	0	Median	1.0368	1.1169	21.757	2	0	Median	1857700000	925530000	932160000	274650000	120250000	154400000	303270000	158510000	144760000	656080000	337430000	318650000	623680000	309330000	314350000	54049	5708	50916	326907;326908;326909;326910;326911;326912	440457;440458;440459;440460;440461;440462;440463;440464	440458			8	
VFNFSTSHIFETR	0	Unmodified	1583.7732	0.77324153	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			12.8	5.63			1						3	3	1			76.215	69.694	2;3	0.00028396	36407	160513_QHF_FH_JSI10Kac_6	73.156	57.995			1.0317	1.0962	23.759	4	1	Linear	1.5605	1.3504	16.392	3	1	Plateau	0.85108	1.0056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169950000	81340000	88610000	102670000	44418000	58250000	67282000	36921000	30360000	0	0	0	0	0	0	54050	2588	50917	326913;326914;326915;326916	440465;440466;440467;440468	440468			4	
VFNIYTDATPLR	0	Unmodified	1408.7351	0.73506511	3566	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	69.112	68.279	2	0.00095948	59703	160511_QHF_FH_JSI11i_2	77.379	62.441			1.1131	0.97298	21.879	5	3	Median	1.1131	0.97298	NaN	1	0	Median	0.73938	0.90842	NaN	1	0	Median	1.1185	1.1461	32.262	2	2	Median	1.2413	1.3186	NaN	1	1	Median	126450000	54898000	71553000	18815000	7570800	11244000	21370000	10830000	10540000	62224000	25473000	36751000	24042000	11025000	13017000	54051	3566	50918	326917;326918;326919;326920;326921	440469;440470;440471;440472;440473	440471			5	
VFNLGVYR	0	Unmodified	966.5287	0.52870115	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	54.196	53.599	2	0.054955	44855	160511_QHF_FH_JSI10i_3	36.185	23.197			0.69637	0.7259	14.337	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74002	0.8557	NaN	1	0	Median	0.69637	0.64309	NaN	1	0	Median	0.69579	0.7259	NaN	1	0	Median	130770000	78493000	52273000	0	0	0	45668000	29789000	15879000	46929000	26129000	20799000	38170000	22575000	15595000	54052	449	50919	326922;326923;326924	440474	440474			1	
VFNLYPR	0	Unmodified	907.49159	0.49158736	2739	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	48.126	47.339	2	0.013061	41443	160511_QHF_FH_JSI9i_2	68.398	39.886			0.77974	0.78812	13.546	5	0	Median	1.0388	0.88906	NaN	1	0	Median	0.62624	0.78139	NaN	1	0	Median	0.91117	0.88799	16.874	2	0	Median	0.6203	0.7031	NaN	1	0	Median	842320000	439780000	402540000	119640000	60276000	59361000	170990000	105150000	65847000	500800000	244210000	256590000	50896000	30153000	20743000	54053	2739	50920	326925;326926;326927;326928;326929	440475;440476;440477;440478	440476			4	
VFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLR	0	Unmodified	4143.1065	0.10654393	5507	Q9Y2A7	NCKAP1	Nck-associated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.02	90.299	4	1.9327E-17	52215	160513_QHF_FH_JSI10Kac_6	101.39	93.517			1.2719	1.5246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2719	1.5246	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	451230000	216590000	234640000	0	0	0	451230000	216590000	234640000	0	0	0	0	0	0	54054	5507	50921	326930	440479	440479			1	
VFNPYTEFK	1	Unmodified	1143.5601	0.56006086	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	2	1	57.936	56.974	2	0.0023906	50001	160511_QHF_FH_JSI9i_2	74.301	67.406			0.87412	1.0311	43.113	6	5	Median	1.2445	1.0595	NaN	1	1	Median	0.79295	0.95038	7.691	2	2	Median	0.61836	0.64139	80.2	2	1	Median	0.94784	1.063	NaN	1	1	Median	2362600000	1390800000	971810000	326350000	169720000	156640000	422320000	221530000	200790000	1115700000	716630000	399110000	498220000	282940000	215270000	54055	3998	50922	326931;326932;326933;326934;326935;326936	440480;440481;440482;440483;440484;440485	440482			6	
VFNTGGAPR	0	Unmodified	917.47191	0.47191456	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	15.972	15.406	2	0.014452	12585	160511_QHF_FH_JSI11i_3	45.335	35.586			0.85573	0.78073	15.92	5	1	Median	0.81799	0.68453	18.597	2	0	Median	0.63896	0.75194	NaN	1	1	Median	0.93908	0.88543	NaN	1	0	Median	0.85573	0.88411	NaN	1	0	Median	537340000	318350000	218990000	147960000	92047000	55914000	44402000	27926000	16476000	162320000	88475000	73843000	182660000	109910000	72752000	54056	1296	50923	326937;326938;326939;326940;326941	440486;440487;440488;440489	440486			4	
VFNTTPDDLDLHVIYDVSHNIAK	1	Unmodified	2625.3075	0.30748157	5596	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	2.51		13	15						1	4	5	10	10	97.657	97.37	3;4	1.5277E-24	84314	160511_QHF_FH_JSI12i_3	165.38	152.3			1.0476	1.0267	23.648	27	10	Median	1.1493	0.9791	26.556	4	1	Median	0.74481	0.92324	31.817	5	2	Median	1.0915	1.0879	25.88	9	3	Median	1.0172	1.0315	17.163	9	4	Median	2070600000	954580000	1116000000	86500000	38088000	48412000	163510000	97453000	66061000	556470000	244580000	311890000	1264100000	574460000	689650000	54057	5596	50924	326942;326943;326944;326945;326946;326947;326948;326949;326950;326951;326952;326953;326954;326955;326956;326957;326958;326959;326960;326961;326962;326963;326964;326965;326966;326967;326968;326969;326970	440490;440491;440492;440493;440494;440495;440496;440497;440498;440499;440500;440501;440502;440503;440504;440505;440506;440507;440508;440509;440510;440511;440512;440513;440514;440515;440516;440517;440518;440519;440520;440521;440522;440523;440524;440525;440526;440527;440528;440529;440530;440531;440532	440520			42	
VFNVFCLYGNVEK	1	Unmodified	1587.7755	0.77554972	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	4.97		9	7						3	4	5	5	5	90.132	88.28	2;3	5.4595E-08	42396	160513_QHF_FH_JSI9Kac_6	111.52	87.143			1.0269	0.99544	17.172	18	6	Median	1.0725	0.93451	11.029	4	1	Linear	0.90353	1.0644	11.504	4	1	Median	0.82442	0.81691	18.003	5	3	Median	1.0606	1.1259	16.593	5	1	Median	2436900000	1205400000	1231500000	371600000	174120000	197480000	162850000	89788000	73065000	760750000	399060000	361690000	1141700000	542440000	599230000	54058	1063	50925	326971;326972;326973;326974;326975;326976;326977;326978;326979;326980;326981;326982;326983;326984;326985;326986;326987;326988;326989	440533;440534;440535;440536;440537;440538;440539;440540;440541;440542;440543;440544;440545;440546;440547;440548;440549;440550;440551;440552;440553;440554;440555;440556;440557;440558;440559	440553			27	
VFNYNTLER	0	Unmodified	1154.572	0.57202253	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.758	42.075	2	2.756E-05	36013	160511_QHF_FH_JSI12i_3	116.73	94.594			0.99382	0.97761	16.677	6	0	Median	1.1287	0.93264	NaN	1	0	Median	0.82581	1.0146	NaN	1	0	Median	1.047	1.0363	13.499	2	0	Median	0.83381	0.8814	30.109	2	0	Median	3814200000	1959900000	1854300000	392810000	183950000	208850000	565570000	294700000	270880000	1581800000	816380000	765380000	1274000000	664830000	609210000	54059	1438	50926	326990;326991;326992;326993;326994;326995	440560;440561;440562;440563;440564;440565;440566	440566			7	
VFPDKEVMLDAALALAAEISSK	2	Acetyl (K)	2359.2345	0.23449955	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	1				By MS/MS	16	0									1				1	103.66	94.222	3	4.3109E-11	51807	160513_QHF_FH_JSI12Kac_6	98.74	85.314			1.033	1.0535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.033	1.0535	NaN	1	0	Median	19545000	8702300	10842000	0	0	0	0	0	0	0	0	0	19545000	8702300	10842000	54060	2340	50927	326996	440567	440567	2430		1	
VFPEHIGEDVLRPAMLAK	1	Unmodified	2021.0768	0.076817118	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	2	1	77.593	76.855	3;4	4.1867E-06	68307	160511_QHF_FH_JSI11i_3	91.957	82.91			0.91087	0.92966	25.029	6	1	Median	1.3781	1.1452	NaN	1	1	Median	0.94451	1.0801	14.547	2	0	Median	0.76947	0.73158	27.222	2	0	Median	0.80987	0.8183	NaN	1	0	Median	549810000	261570000	288240000	45946000	19358000	26588000	107680000	48271000	59407000	311710000	152020000	159680000	84476000	41913000	42563000	54061	4047	50928	326997;326998;326999;327000;327001;327002	440568;440569;440570;440571;440572;440573;440574;440575;440576;440577;440578;440579	440569			12	
VFPGSTTEDYNLIVIER	0	Unmodified	1951.9891	0.98910755	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.777	9	8	5							5	4	7	6	85.107	84.613	2;3	9.3127E-41	76843	160511_QHF_FH_JSI10i_1	162.79	145.3			0.95483	1.0329	22.366	21	3	Median	1.2713	1.0882	15.941	4	0	Median	0.87414	1.1085	6.627	4	0	Linear	0.90725	0.91003	29.748	7	2	Median	0.96707	1.07	11.872	6	1	Median	2398600000	1200200000	1198400000	316320000	142650000	173670000	567860000	298810000	269050000	880650000	439500000	441150000	633770000	319200000	314580000	54062	2380	50929	327003;327004;327005;327006;327007;327008;327009;327010;327011;327012;327013;327014;327015;327016;327017;327018;327019;327020;327021;327022;327023;327024	440580;440581;440582;440583;440584;440585;440586;440587;440588;440589;440590;440591;440592;440593;440594;440595;440596;440597;440598;440599;440600;440601;440602;440603;440604;440605;440606;440607;440608;440609;440610;440611;440612;440613;440614;440615;440616;440617;440618;440619	440599			40	
VFPHAEFR	0	Unmodified	1001.5083	0.50830006	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	33.59	32.609	3	0.00056424	26613	160511_QHF_FH_JSI9i_3	80.438	69.728			0.75571	0.75663	29.69	3	1	Median	1.0109	0.83466	NaN	1	0	Median	0.41682	0.47856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75571	0.75663	NaN	1	1	Median	197710000	117800000	79908000	69469000	38844000	30625000	50000000	36310000	13690000	0	0	0	78242000	42649000	35593000	54063	3133	50930	327025;327026;327027;327028;327029	440620;440621;440622;440623;440624;440625	440623			6	
VFPHEVNWNK	1	Unmodified	1268.6302	0.63020611	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	41.121	40.91	2	0.00073811	34988	160511_QHF_FH_JSI12i_3	78.334	67.811			1.5196	1.5777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5196	1.5777	NaN	1	1	Median	49438000	20423000	29015000	0	0	0	0	0	0	0	0	0	49438000	20423000	29015000	54064	2305	50931	327030;327031	440626;440627	440627			2	
VFPLSCAVQQYAWGK	1	Unmodified	1752.8658	0.86576171	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			89.841	88.726	2	5.1427E-05	74167	160511_QHF_FH_JSI10i_3	118.4	93.55			1.2199	1.1994	3.9156	2	0	Median	1.3894	1.1666	NaN	1	0	Median	1.0711	1.233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43758000	21970000	21788000	15271000	6661500	8609100	28487000	15308000	13179000	0	0	0	0	0	0	54065	1418	50932	327032;327033	440628;440629;440630	440629			3	
VFPMPLPR	0	Unmodified	955.53134	0.53134369	2594	Q15003	NCAPH	Condensin complex subunit 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	65.403	65.109	2	0.0077709	56307	160511_QHF_FH_JSI12i_3	68.398	52.766			3.7905	3.7868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7905	3.7868	NaN	1	1	Median	1438900000	168880000	1270000000	0	0	0	0	0	0	0	0	0	1438900000	168880000	1270000000	54066	2594	50933	327034	440631	440631			1	
VFPNQVLK	1	Unmodified	943.5491	0.54910224	3297	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.946	46.548	2	0.056342	39898	160511_QHF_FH_JSI12i_2	35.88	18.953			1.1759	1.2873	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1759	1.2873	NaN	1	0	Median	22307000	11396000	10911000	0	0	0	0	0	0	0	0	0	22307000	11396000	10911000	54067	3297	50934	327035	440632	440632			1	
VFPNQVLKPFLEDSK	2	Unmodified	1759.9509	0.95087155	3297	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	83.923	83.26	3	9.3441E-05	69938	160511_QHF_FH_JSI10i_3	85.734	69.615			0.98052	0.92986	9.7603	4	0	Median	1.1079	0.88826	NaN	1	0	Median	0.8678	0.97341	NaN	1	0	Median	1.1098	1.0659	NaN	1	0	Median	0.8353	0.85769	NaN	1	0	Median	625690000	306110000	319590000	125930000	52342000	73590000	132590000	75903000	56690000	234300000	110630000	123670000	132870000	67230000	65643000	54068	3297	50935	327036;327037;327038;327039	440633;440634;440635;440636;440637;440638;440639;440640;440641;440642;440643	440638			11	
VFPNSAPLEGGTR	0	Unmodified	1343.6834	0.68336389	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	44.041	43.515	2	0.00050598	37367	160511_QHF_FH_JSI11i_2	69.979	58.132			1.7572	1.3969	20.842	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9467	1.8519	30.406	2	1	Median	1.7076	1.8247	19.403	2	1	Median	221710000	88998000	132710000	0	0	0	0	0	0	115560000	42746000	72818000	106150000	46252000	59895000	54069	907	50936	327040;327041;327042;327043	440644;440645;440646;440647	440646			4	
VFPSHFTQQR	0	Unmodified	1245.6255	0.62545508	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			28.137	26.798	3	0.00048735	22189	160511_QHF_FH_JSI10i_3	49.466	14.262			0.98604	0.94712	8.404	2	0	Median	1.1211	0.89248	NaN	1	0	Median	0.86728	1.0051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110600000	50349000	60255000	52323000	21700000	30623000	58281000	28649000	29632000	0	0	0	0	0	0	54070	3290	50937	327044;327045	440648	440648			1	
VFPTGPSDWR	0	Unmodified	1160.5615	0.56145784	4257	Q96T60	PNKP	Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3'-phosphatase;Polynucleotide 5'-hydroxyl-kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	54.32	54.068	2	0.0021369	46462	160511_QHF_FH_JSI12i_3	61.679	55.736			1.1141	1.1706	13.323	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1985	1.1874	2.0193	2	0	Median	0.94595	0.944	NaN	1	0	Median	212190000	104050000	108140000	0	0	0	0	0	0	136140000	63644000	72497000	76053000	40406000	35647000	54071	4257	50938	327046;327047;327048	440649;440650;440651;440652;440653	440653			5	
VFPWFSVK	1	Unmodified	1008.5433	0.54328858	2204	Q03164	KMT2A	Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	85.607	84.909	2	0.0099826	73649	160511_QHF_FH_JSI12i_3	55.531	36.8			1.3094	1.1892	22.691	2	0	Median	1.7023	1.3962	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0072	1.013	NaN	1	0	Median	70014000	39037000	30977000	17697000	8456800	9239800	0	0	0	0	0	0	52317000	30580000	21737000	54072	2204	50939	327049;327050	440654;440655	440655			2	
VFQAMWLSFLK	1	Oxidation (M)	1384.7213	0.7213293	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	91.746	82.552	2	8.2423E-05	44584	160513_QHF_FH_JSI12Kac_6	91.658	65.72			0.89329	0.79222	6.2094	3	0	Plateau	0.88713	0.75844	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89329	0.85728	NaN	1	0	Median	0.74239	0.79222	NaN	1	0	Median	296710000	155680000	141030000	89413000	41087000	48326000	0	0	0	123590000	62221000	61374000	83708000	52373000	31335000	54073	4471	50940	327051;327052;327053	440656;440657;440658	440658		2480	3	
VFQAMWLSFLK	1	Unmodified	1368.7264	0.72641468	4471	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.609	87.215	2	1.3568E-13	49034	160513_QHF_FH_JSI9Kac_6	150.61	120.8			0.98116	0.97498	4.9805	4	2	Median	1.0539	0.91567	NaN	1	1	Median	0.83161	0.9825	NaN	1	1	Median	1.0774	1.0334	NaN	1	0	Median	0.91343	0.96752	NaN	1	0	Median	1448500000	752700000	695770000	276800000	141540000	135260000	380900000	211010000	169890000	493900000	241880000	252020000	296870000	158270000	138600000	54074	4471	50940	327054;327055;327056;327057	440659;440660;440661;440662;440663;440664	440661			6	
VFQASPEDHEK	1	Unmodified	1285.5939	0.59388018	3701	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	13.47	13.075	2;3	0.00010541	10364	160511_QHF_FH_JSI12i_2	98.249	87.098			1.1173	1.1312	22.175	11	3	Median	1.4574	1.2577	2.3236	2	0	Median	0.88834	1.0977	15.37	2	0	Median	1.212	1.1312	13.389	3	1	Median	0.94001	1.0044	36.866	4	2	Median	584500000	300380000	284120000	117240000	58190000	59052000	116300000	63394000	52908000	179700000	82653000	97042000	171260000	96143000	75122000	54075	3701	50941	327058;327059;327060;327061;327062;327063;327064;327065;327066;327067;327068;327069;327070	440665;440666;440667;440668;440669;440670;440671;440672;440673;440674;440675;440676;440677;440678;440679;440680;440681;440682;440683	440670			19	
VFQEPLFYEAPR	0	Unmodified	1494.7507	0.75071518	875	P07711	CTSL	Cathepsin L1;Cathepsin L1 heavy chain;Cathepsin L1 light chain	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			71.501	70.716	2	0.012897	62903	160511_QHF_FH_JSI10i_2	58.37	38.608			0.89968	1.1113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89968	1.1113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47496000	19760000	27736000	0	0	0	47496000	19760000	27736000	0	0	0	0	0	0	54076	875	50942	327071	440684	440684			1	
VFQETQK	1	Unmodified	878.44978	0.44978213	2111	P82914	MRPS15	28S ribosomal protein S15, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.2443	9.0651	2	0.012322	6848	160511_QHF_FH_JSI10i_1	74.415	52.869			1.5812	1.7067	16.502	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2731	1.5187	NaN	1	1	Median	1.9637	1.918	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	228820000	99895000	128920000	0	0	0	124570000	56437000	68129000	104250000	43458000	60793000	0	0	0	54077	2111	50943	327072;327073	440685;440686	440686			2	
VFQFLNAK	1	Unmodified	965.53345	0.53345218	2120	P83731	RPL24	60S ribosomal protein L24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.05		4	8				2	2	3	4	5	7	3	62.566	56.965	2	0.00020294	47434	160511_QHF_FH_JSI10i_3	110.36	84.626			0.86613	0.63719	20.05	14	5	Linear	0.93211	0.8372	7.7858	3	1	Plateau	0.70607	0.78932	26.979	4	2	Median	0.87485	0.81906	26.201	5	2	Median	0.77567	0.83646	9.4155	2	0	Median	24077000000	9449400000	14628000000	7104900000	2360800000	4744200000	6381400000	2893700000	3487700000	9795000000	3767800000	6027200000	795920000	427070000	368850000	54078	2120	50944	327074;327075;327076;327077;327078;327079;327080;327081;327082;327083;327084;327085;327086;327087;327088;327089;327090;327091;327092	440687;440688;440689;440690;440691;440692;440693;440694;440695;440696;440697;440698;440699;440700;440701;440702;440703;440704;440705;440706;440707;440708;440709;440710;440711;440712	440694			26	
VFQGTDEQLNDLYHNHQR	0	Unmodified	2213.025	0.024992557	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	44.718	44.559	3;4	0.00018121	39250	160511_QHF_FH_JSI11i_3	54.805	49.713			0.82211	0.84232	13.341	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7231	0.67184	NaN	1	1	Median	0.82211	0.83562	6.2226	2	0	Median	112400000	71245000	41153000	0	0	0	0	0	0	28777000	18772000	10005000	83622000	52473000	31149000	54079	3896	50945	327093;327094;327095	440713;440714;440715	440713			1	
VFQKYTK	2	Acetyl (K)	954.51747	0.51746776	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		33.063	23.355	2	0.011326	13983	160513_QHF_FH_JSI11Kac_5	89.142	46.019			0.42976	0.42356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42976	0.42356	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68533000	49411000	19121000	0	0	0	0	0	0	68533000	49411000	19121000	0	0	0	54080	805	50946	327096	440716	440716	441		1	
VFQNEVLGTLQR	0	Unmodified	1402.7569	0.75686319	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	59.59	58.901	2	1.8668E-05	50710	160511_QHF_FH_JSI12i_3	112.13	77.877			0.96622	1.0048	17.984	7	5	Median	1.489	1.2464	NaN	1	1	Median	0.81514	0.99755	22.19	2	2	Median	0.91906	0.8868	17.665	2	2	Median	0.98454	1.0562	17.679	2	0	Median	570050000	296380000	273670000	62387000	25033000	37354000	154100000	87568000	66533000	196170000	102370000	93798000	157390000	81408000	75980000	54081	2358	50947	327097;327098;327099;327100;327101;327102;327103	440717;440718;440719;440720;440721;440722;440723;440724;440725	440724			9	
VFQSLPHENK	1	Unmodified	1197.6142	0.6142217	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.69		8	5					1	3	4	4	4	5	24.289	21.766	2;3	2.6748E-09	17964	160511_QHF_FH_JSI12i_3	127.68	100.55			0.97207	0.96956	16.014	17	1	Median	1.0128	0.865	16.541	4	1	Median	0.97447	1.1596	17.171	4	0	Linear	1.0093	0.98815	3.3748	4	0	Median	1.1034	1.1262	14.875	5	0	Median	4097100000	2077400000	2019600000	390590000	191590000	199000000	686460000	407950000	278510000	1474700000	785590000	689150000	1545300000	692280000	852980000	54082	804	50948	327104;327105;327106;327107;327108;327109;327110;327111;327112;327113;327114;327115;327116;327117;327118;327119;327120	440726;440727;440728;440729;440730;440731;440732;440733;440734;440735;440736;440737;440738;440739;440740;440741;440742;440743;440744;440745;440746;440747;440748;440749;440750;440751;440752;440753;440754;440755;440756;440757;440758;440759;440760;440761;440762;440763	440761			38	
VFQSLPHENKPLTLSNYQTNK	2	Unmodified	2457.2652	0.26522283	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.44		4	8						7	6	5	4	4	54.971	50.937	3;4	2.9007E-102	41923	160511_QHF_FH_JSI9i_3	253.95	223.52			0.89065	0.92685	24.925	19	1	Median	0.95409	0.82266	15.178	6	0	Median	0.81852	0.92685	5.715	5	0	Median	1.0797	1.0434	24.081	4	0	Median	0.87322	0.91226	42.233	4	1	Median	15815000000	7959300000	7856100000	4851200000	2223500000	2627700000	4465300000	2409500000	2055700000	5933800000	3007000000	2926800000	565100000	319290000	245810000	54083	804	50949	327121;327122;327123;327124;327125;327126;327127;327128;327129;327130;327131;327132;327133;327134;327135;327136;327137;327138;327139	440764;440765;440766;440767;440768;440769;440770;440771;440772;440773;440774;440775;440776;440777;440778;440779;440780;440781;440782;440783;440784;440785;440786;440787;440788;440789;440790;440791;440792;440793;440794;440795;440796;440797;440798;440799;440800;440801;440802;440803;440804;440805;440806;440807;440808;440809;440810;440811;440812;440813	440791			50	
VFQSLPHENKPLTLSNYQTNK	2	Acetyl (K)	2499.2758	0.27578751	804	P04080	CSTB	Cystatin-B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	1	1	3	1	72.344	63.136	3;4	1.0072E-47	34256	160513_QHF_FH_JSI11Kac_6	184.35	168.68			0.59258	0.56194	76.76	4	0	Median	0.80402	0.68734	NaN	1	0	Median	1.2237	1.4628	NaN	1	0	Median	0.24617	0.23331	NaN	1	0	Median	0.43675	0.45942	NaN	1	0	Median	614150000	446530000	167620000	19121000	9167500	9953900	91079000	41600000	49479000	434760000	346390000	88370000	69190000	49375000	19815000	54084	804	50949	327140;327141;327142;327143;327144;327145	440814;440815;440816;440817;440818;440819;440820;440821;440822;440823	440815	437		10	
VFQSSANYAENFIQSIISTVEPAQR	0	Unmodified	2798.3875	0.38752281	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		3	3						1	1	2	3	1	102.63	101.23	3	7.4525E-29	91577	160511_QHF_FH_JSI10i_2	161.46	155.4			0.91712	0.91647	22.405	7	4	Median	1.0863	0.92271	NaN	1	0	Median	0.70184	0.86285	6.4561	2	1	Median	1.1228	1.0897	14.745	3	2	Median	0.57565	0.60368	NaN	1	1	Median	438410000	227430000	210980000	166480000	71730000	94749000	67576000	35382000	32193000	190430000	109710000	80725000	13921000	10606000	3314900	54085	1460	50950	327146;327147;327148;327149;327150;327151;327152	440824;440825;440826;440827;440828;440829;440830	440829			7	
VFQSSTSQEQVYNDCAK	1	Unmodified	1989.8738	0.87381979	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.091	31.708	2	8.2685E-66	28279	160511_QHF_FH_JSI10i_1	234.69	204.75			0.6877	0.80169	30.64	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6877	0.80169	NaN	1	0	Median	0.83148	0.79627	NaN	1	0	Median	1.3106	1.3583	NaN	1	0	Median	120930000	58151000	62779000	0	0	0	48082000	21394000	26688000	37673000	23867000	13807000	35175000	12890000	22285000	54086	1400	50951	327153;327154;327155	440831;440832;440833;440834;440835	440835			5	
VFQVEYAMK	1	Unmodified	1113.5529	0.55286699	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.16	1	4	5					3	2	4	3	5	3	56.216	52.182	2	2.1666E-06	45864	160511_QHF_FH_JSI9i_2	127.56	113.41			1.0564	1.0708	31.297	12	4	Median	1.273	1.0533	20.293	3	1	Plateau	0.93006	1.1352	18.697	3	0	Median	1.1035	1.0649	49.829	4	3	Median	1.083	1.1858	12.081	2	0	Median	3706000000	1781200000	1924800000	765680000	368320000	397360000	781190000	446410000	334780000	1152500000	514580000	637880000	1006700000	451930000	554740000	54087	1266	50952	327156;327157;327158;327159;327160;327161;327162;327163;327164;327165;327166;327167;327168;327169;327170	440836;440837;440838;440839;440840;440841;440842;440843;440844;440845;440846;440847;440848;440849;440850;440851;440852;440853;440854;440855;440856	440845			21	
VFQVEYAMK	1	Oxidation (M)	1129.5478	0.54778161	1266	P25788	PSMA3	Proteasome subunit alpha type-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.639							2	4	1	1	2	2	2	48.837	38.553	2	0.0063316	19784	160513_QHF_FH_JSI10Kac_5	60.59	50.679			0.95896	0.97815	20.641	7	0	Median	1.2125	0.97815	NaN	1	0	Median	0.73483	0.87916	37.653	2	0	Median	1.0384	1.0325	10.984	2	0	Median	0.85938	0.94241	27.389	2	0	Median	45538000	22496000	23043000	5853600	2418200	3435500	13025000	5940200	7084400	12484000	6483200	6001000	14176000	7654100	6522000	54088	1266	50952	327171;327172;327173;327174;327175;327176;327177	440857;440858;440859;440860	440860		894	4	
VFQVMNLR	0	Unmodified	1005.543	0.54297101	941	P09913	IFIT2	Interferon-induced protein with tetratricopeptide repeats 2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	56.381	55.547	2	0.016949	46614	160511_QHF_FH_JSI10i_3	49.058	35.283			0.70587	0.65475	22.927	4	0	Median	0.71151	0.58746	NaN	1	0	Median	0.44279	0.50428	NaN	1	0	Median	0.92487	0.84653	NaN	1	0	Median	0.70027	0.72975	NaN	1	0	Median	142940000	83502000	59439000	40932000	25078000	15855000	35742000	26460000	9281900	27992000	13368000	14624000	38275000	18597000	19678000	54089	941	50953	327178;327179;327180;327181	440861	440861			1	
VFRENSDK	1	Unmodified	993.48796	0.48795855	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		5.6329	5.2932	3	0.0098137	3202	160511_QHF_FH_JSI9i_3	39.022	29.367			1.3565	1.3609	24.705	3	0	Plateau	1.7732	1.4377	NaN	1	0	Median	1.0378	1.1632	NaN	1	0	Median	0.95087	0.87858	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	364660000	163240000	201430000	182520000	63725000	118800000	138090000	76264000	61830000	44048000	23246000	20801000	0	0	0	54090	3159	50954	327182;327183;327184	440862;440863	440863			2	
VFSAFITVLQMK	1	Unmodified	1382.7632	0.76319412	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	3	2	1	93.925	87.834	2	8.9437E-14	46419	160513_QHF_FH_JSI11Kac_6	163.64	137.7			0.73373	0.71834	23.963	8	5	Median	0.87263	0.72486	0.78958	2	1	Median	0.60628	0.71587	31.557	3	2	Median	0.66679	0.6272	35.376	2	2	Median	0.63013	0.67549	NaN	1	0	Median	1129400000	630710000	498670000	211590000	104610000	106980000	403400000	210220000	193190000	420040000	251890000	168150000	94339000	63994000	30344000	54091	2925	50955	327185;327186;327187;327188;327189;327190;327191;327192	440864;440865;440866;440867;440868;440869;440870	440865			7	
VFSAFITVLQMK	1	Oxidation (M)	1398.7581	0.75810874	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	86.913	77.471	2	7.1591E-05	41393	160513_QHF_FH_JSI12Kac_6	102.52	74.319			0.97674	1.0472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97674	1.0472	NaN	1	1	Median	17928000	9264400	8663300	0	0	0	0	0	0	0	0	0	17928000	9264400	8663300	54092	2925	50955	327193;327194	440871;440872	440872		2169	2	
VFSANSTAACTELAK	1	Unmodified	1568.7505	0.75045718	2543	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	2	2										1	3	42.219	41.436	2	9.6838E-06	35337	160511_QHF_FH_JSI12i_2	86.313	68.504			0.61172	0.61673	39.572	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83515	0.81586	NaN	1	0	Median	0.44806	0.4662	NaN	1	0	Median	198750000	132090000	66657000	0	0	0	0	0	0	40940000	21263000	19677000	157810000	110830000	46980000	54093	2543	50956	327195;327196;327197;327198	440873;440874;440875;440876	440875			4	
VFSATLGLVDIVK	1	Unmodified	1360.7966	0.79660274	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.72	5.06		8	7						3	4	4	6	4	93.968	92.413	2;3	4.6707E-12	45452	160513_QHF_FH_JSI10Kac_6	122.7	99.323			1.0439	1.0343	22.946	18	8	Median	1.2848	1.0713	27.414	4	3	Median	0.83447	0.97995	17.242	4	1	Median	1.1007	1.0489	20.684	6	3	Median	0.88288	0.94177	33.949	4	1	Median	2198200000	1146000000	1052300000	378370000	158750000	219620000	706560000	385680000	320880000	528330000	253030000	275300000	584950000	348490000	236460000	54094	939	50957	327199;327200;327201;327202;327203;327204;327205;327206;327207;327208;327209;327210;327211;327212;327213;327214;327215;327216	440877;440878;440879;440880;440881;440882;440883;440884;440885;440886;440887;440888;440889;440890;440891;440892;440893;440894;440895;440896;440897;440898;440899;440900;440901;440902;440903;440904;440905	440905			29	
VFSDEVQQQAQLSTIR	0	Unmodified	1847.9377	0.93774068	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								5	4	4	3	56.421	55.66	2;3	2.7518E-117	50544	160511_QHF_FH_JSI11i_1	331.1	314.57			0.95027	1.0172	9.5204	15	1	Median	1.2979	1.0932	5.2375	4	0	Median	0.83855	0.97282	4.9874	4	0	Linear	0.97181	0.96346	4.753	4	1	Linear	0.80733	0.82303	4.4166	3	0	Plateau	3669400000	1781100000	1888300000	748710000	301560000	447150000	964840000	519130000	445720000	1244900000	625340000	619600000	710890000	335030000	375860000	54095	5494	50958	327217;327218;327219;327220;327221;327222;327223;327224;327225;327226;327227;327228;327229;327230;327231;327232	440906;440907;440908;440909;440910;440911;440912;440913;440914;440915;440916;440917;440918;440919;440920;440921;440922;440923;440924;440925;440926;440927;440928;440929;440930;440931	440907			26	
VFSDVMEDLYNYINPHNGK	1	Unmodified	2254.0365	0.036468446	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.8		4	2						1	1	2	2	2	99.822	98.944	3	1.4288E-67	87895	160511_QHF_FH_JSI12i_3	225.7	221.05			1.1146	1.1348	19.236	7	1	Median	1.1658	0.99866	NaN	1	0	Median	1.2042	1.47	29.168	2	1	Median	1.1221	1.0941	0.99829	2	0	Median	1.0673	1.1496	1.8344	2	0	Median	4072300000	1949500000	2122800000	338860000	158130000	180730000	387330000	191520000	195810000	1093200000	508650000	584550000	2252900000	1091200000	1161700000	54096	1242	50959	327233;327234;327235;327236;327237;327238;327239	440932;440933;440934;440935;440936;440937;440938;440939;440940;440941;440942;440943;440944	440942			13	
VFSFGSGK	1	Unmodified	827.41775	0.41775372	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	33.077	32.983	2	0.012376	27903	160511_QHF_FH_JSI12i_3	52.716	27.718			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54097	5332	50960	327240	440945	440945			1	
VFSFPAPSHVVTATFPYTTILSIWLATR	0	Unmodified	3121.6641	0.66407901	5730	Q9Y6I9	TEX264	Testis-expressed sequence 264 protein	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				99.703	90.548	3	4.6038E-06	52239	160513_QHF_FH_JSI9Kac_6	64.383	58.088			0.56389	0.48192	NaN	1	0	Median	0.56389	0.48192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103920000	60150000	43773000	103920000	60150000	43773000	0	0	0	0	0	0	0	0	0	54098	5730	50961	327241	440946	440946			0	
VFSGLVSTGLK	1	Unmodified	1106.6336	0.63356015	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.64	4	4	4				1	4	4	5	5	6	5	62.646	57.894	2	9.8368E-10	30660	160513_QHF_FH_JSI9Kac_6	129.85	105.82			0.97392	0.9635	13.306	21	0	Median	1.1481	0.9635	11.873	5	0	Median	0.88034	0.91609	13.856	5	0	Median	0.96255	0.96682	14.302	6	0	Median	0.97527	1.0398	16.478	5	0	Median	64750000000	28563000000	36187000000	11855000000	4436900000	7418300000	15172000000	6486600000	8685200000	18056000000	8911700000	9144100000	19667000000	8727600000	10940000000	54099	1033	50962	327242;327243;327244;327245;327246;327247;327248;327249;327250;327251;327252;327253;327254;327255;327256;327257;327258;327259;327260;327261;327262	440947;440948;440949;440950;440951;440952;440953;440954;440955;440956;440957;440958;440959;440960;440961;440962;440963;440964;440965;440966;440967;440968;440969;440970;440971;440972;440973;440974;440975;440976;440977;440978;440979;440980;440981;440982;440983;440984;440985;440986;440987;440988;440989;440990;440991;440992;440993;440994;440995;440996;440997;440998	440987			52	
VFSGNELGALLGWWLFTSWK	1	Unmodified	2310.1837	0.18372503	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.28	95.823	3	6.1665E-05	54471	160513_QHF_FH_JSI9Kac_6	70.315	62.693			1.6027	1.6175	38.449	2	0	Median	2.4768	2.1228	NaN	1	0	Median	1.0371	1.2324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	216060000	99402000	116660000	54043000	17380000	36662000	162020000	82022000	79996000	0	0	0	0	0	0	54100	4080	50963	327263;327264	440999;441000;441001	440999			3	
VFSIGPVFR	0	Unmodified	1020.5757	0.57565135	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	2	3	3	74.291	71.191	2	2.5579E-05	59357	160511_QHF_FH_JSI9i_3	104.45	92.543			0.98139	0.9562	11.111	11	0	Median	1.1239	0.93299	1.3167	3	0	Plateau	0.84035	0.99487	5.2519	2	0	Median	0.97281	0.89909	10.388	3	0	Plateau	0.98139	0.98098	20.243	3	0	Median	857250000	424390000	432860000	259790000	116850000	142940000	238810000	133170000	105640000	225920000	112980000	112940000	132740000	61388000	71354000	54101	1064	50964	327265;327266;327267;327268;327269;327270;327271;327272;327273;327274;327275	441002;441003;441004;441005;441006;441007;441008;441009;441010;441011;441012;441013;441014	441008			13	
VFSIISSEK	1	Unmodified	1008.5492	0.54916182	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	47.459	46.856	2	0.015336	39903	160511_QHF_FH_JSI12i_3	44.318	26.932			1.2087	1.1926	7.3872	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0176	1.1926	NaN	1	0	Median	1.1501	1.0677	NaN	1	0	Median	1.2165	1.2283	NaN	1	0	Median	313580000	134780000	178800000	0	0	0	25616000	11508000	14108000	111740000	46707000	65038000	176220000	76569000	99654000	54102	285	50965	327276;327277;327278	441015;441016;441017	441016			3	
VFSIPEGQK	1	Unmodified	1003.5338	0.53384611	5636	Q9Y4P8	WIPI2	WD repeat domain phosphoinositide-interacting protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.779	39.32	2	0.022362	33694	160511_QHF_FH_JSI11i_2	43.734	16.248			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54103	5636	50966	327279	441018	441018			1	
VFSIVIPFLYVGTLISK	1	Unmodified	1895.1172	0.11720859	4722	Q9H4I9	SMDT1	Essential MCU regulator, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.8	5.63			1						3	1	1	2		102.51	96.425	2	2.5837E-23	53239	160513_QHF_FH_JSI11Kac_6	204.13	174.45			0.68771	0.65323	43.732	4	4	Linear	0.59985	0.5097	NaN	1	1	Median	0.76688	0.90335	NaN	1	1	Median	1.3367	1.2755	10.826	2	2	Median	NaN	NaN	NaN	0	0	Median	823190000	478810000	344380000	410030000	264170000	145860000	245640000	132270000	113370000	167520000	82370000	85149000	0	0	0	54104	4722	50967	327280;327281;327282;327283	441019;441020;441021;441022	441020			4	
VFSLMDPNSPER	0	Unmodified	1390.6551	0.65510023	3231	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	57.678	56.831	2	1.8142E-05	50013	160511_QHF_FH_JSI9i_2	112.36	104.71			1.1306	1.1424	11.947	5	3	Median	1.2644	1.0682	NaN	1	0	Median	0.93595	1.1424	NaN	1	0	Median	1.0063	1.03	16.291	2	2	Median	1.1306	1.2656	NaN	1	1	Median	521360000	268480000	252880000	71897000	37321000	34576000	85765000	49539000	36226000	273380000	144580000	128800000	90313000	37042000	53271000	54105	3231	50968	327284;327285;327286;327287;327288	441023;441024;441025;441026;441027;441028;441029	441025			7	
VFSLSSEFK	1	Unmodified	1042.5335	0.53351176	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	59.366	58.628	2	3.1741E-05	51805	160511_QHF_FH_JSI11i_3	101.64	77.489			1.1176	1.1871	6.0068	5	0	Median	1.4931	1.2688	NaN	1	0	Median	0.95445	1.1871	NaN	1	0	Median	1.2275	1.2089	9.2198	2	0	Median	1.0048	1.1403	NaN	1	0	Median	1087300000	520050000	567280000	141520000	56744000	84774000	216700000	124450000	92257000	436910000	197200000	239700000	292190000	141650000	150540000	54106	552	50969	327289;327290;327291;327292;327293	441030;441031;441032;441033;441034;441035	441032			6	
VFSNVSIILFLNK	1	Unmodified	1492.8654	0.865351	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	93.642	84.415	2	4.6445E-05	47621	160513_QHF_FH_JSI11Kac_6	91.855	76.589			0.8663	0.83874	53.071	3	1	Plateau	0.95365	0.8258	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8663	0.83874	NaN	1	0	Median	0.31845	0.33196	NaN	1	1	Median	150560000	95816000	54747000	47319000	27531000	19788000	0	0	0	67768000	39248000	28520000	35476000	29037000	6439500	54107	2531	50970	327294;327295;327296	441036;441037;441038	441036			3	
VFSSTLQNWQTTR	0	Unmodified	1566.7791	0.77905519	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				55.36	53.794	2	0.010693	44150	160511_QHF_FH_JSI9i_3	47.894	32.628			1.0077	0.8137	NaN	1	0	Median	1.0077	0.8137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25230000	11588000	13642000	25230000	11588000	13642000	0	0	0	0	0	0	0	0	0	54108	344	50971	327297	441039	441039			1	
VFSWGFGGYGR	0	Unmodified	1231.5774	0.57744226	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	77.841	69.434	2	0.0029504	38680	160513_QHF_FH_JSI10Kac_6	67.507	56.984			0.89872	0.92689	24.29	4	0	Median	1.5347	1.3137	NaN	1	0	Median	0.66212	0.76195	NaN	1	0	Median	0.85024	0.83304	NaN	1	0	Median	0.94995	1.0313	NaN	1	0	Median	275570000	150920000	124650000	50411000	20353000	30057000	184130000	110340000	73792000	23881000	11931000	11949000	17149000	8298200	8850800	54109	5200	50972	327298;327299;327300;327301	441040;441041	441041			2	
VFSWLATLHGSNMK	1	Unmodified	1589.8024	0.80243317	766	P00395	MT-CO1	Cytochrome c oxidase subunit 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		73.124	73.124	3	0.0019053	65320	160511_QHF_FH_JSI11i_3	50.806	38.83			1.206	1.1519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.206	1.1519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26115000	10954000	15161000	0	0	0	0	0	0	26115000	10954000	15161000	0	0	0	54110	766	50973	327302	441042	441042			1	
VFSWLQQEGHLSEEEMAR	0	Unmodified	2175.0055	0.0055026685	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.71	5.73		6	7						4	4	8	4	1	73.455	70.338	2;3	4.1297E-50	63419	160511_QHF_FH_JSI10i_2	173.25	144.45			1.1287	1.1007	20.215	13	3	Median	1.2753	1.0895	1.622	3	0	Median	1.0372	1.2234	28.351	5	1	Median	1.2773	1.1801	18.903	4	2	Median	0.87861	0.94302	NaN	1	0	Median	2094100000	1046300000	1047800000	321960000	129340000	192620000	830060000	440590000	389470000	848540000	429860000	418680000	93541000	46511000	47030000	54111	1205	50974	327303;327304;327305;327306;327307;327308;327309;327310;327311;327312;327313;327314;327315;327316;327317;327318;327319	441043;441044;441045;441046;441047;441048;441049;441050;441051;441052;441053;441054;441055;441056;441057;441058;441059;441060;441061;441062;441063;441064;441065	441059			23	
VFSWLQQEGHLSEEEMAR	0	Oxidation (M)	2191.0004	0.0004172906	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	10.8	6.37			2						3	2	2		1	69.211	63.479	3	2.2771E-08	34785	160513_QHF_FH_JSI10Kac_6	114.4	110.68			1.1905	1.1572	15.809	5	0	Median	1.5736	1.3185	18.458	2	0	Median	1.0466	1.2344	20.703	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0375	1.0949	NaN	1	0	Median	318920000	146760000	172160000	85485000	31603000	53882000	155920000	72026000	83891000	0	0	0	77514000	43130000	34384000	54112	1205	50974	327320;327321;327322;327323;327324	441066;441067;441068;441069;441070;441071	441071		829	6	
VFTAIANQPWAQK	1	Unmodified	1472.7776	0.77759863	2730	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	3.69	2	3	7						1	2	3	4	4	63.859	62.326	2;3	2.792E-52	54820	160511_QHF_FH_JSI9i_2	197.27	155.08			0.91307	0.97482	34.829	10	2	Median	1.2066	0.9674	NaN	1	0	Median	0.83807	0.9823	44.476	3	0	Median	1.1356	1.0665	39.512	4	2	Median	0.8932	0.9115	7.4447	2	0	Median	2431000000	1234900000	1196100000	234890000	102180000	132710000	355780000	201320000	154460000	975000000	439690000	535310000	865340000	491710000	373630000	54113	2730	50975	327325;327326;327327;327328;327329;327330;327331;327332;327333;327334;327335;327336;327337	441072;441073;441074;441075;441076;441077;441078;441079;441080;441081;441082;441083;441084;441085;441086;441087;441088;441089;441090;441091;441092	441088			21	
VFTASCDK	1	Unmodified	926.41677	0.41676744	2092	P78406	RAE1	mRNA export factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	12.453	11.996	2	0.042075	9446	160511_QHF_FH_JSI12i_2	39.022	23.583			1.4953	1.5495	13.476	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7323	1.7044	NaN	1	1	Median	1.2906	1.4086	NaN	1	0	Median	168600000	68282000	100320000	0	0	0	0	0	0	137540000	53822000	83722000	31057000	14461000	16596000	54114	2092	50976	327338;327339	441093;441094	441094			2	
VFTEIDRMPQLLAYYYK	1	Unmodified	2149.0918	0.09179848	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		100.34	100.34	3	0.01579	89333	160511_QHF_FH_JSI11i_3	42.647	32.989			0.61266	0.55719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61266	0.55719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32933000	20998000	11935000	0	0	0	0	0	0	32933000	20998000	11935000	0	0	0	54115	2119	50977	327340	441095	441095			1	
VFTESEDRTASAEEIK	1	Unmodified	1810.8585	0.85848731	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							1	2	3	4	30.943	30.299	2;3	2.8578E-05	25558	160511_QHF_FH_JSI12i_2	68.576	58.109			1.2269	1.2116	25.466	10	3	Median	1.4065	1.2165	NaN	1	0	Median	0.95891	1.1752	3.7446	2	0	Median	1.3045	1.3187	39.867	3	1	Median	1.2547	1.3041	28.725	4	2	Median	1180800000	570140000	610690000	184650000	82585000	102070000	221000000	117430000	103570000	395880000	175570000	220310000	379290000	194560000	184730000	54116	5495	50978	327341;327342;327343;327344;327345;327346;327347;327348;327349;327350	441096;441097;441098;441099;441100;441101;441102;441103;441104;441105;441106;441107;441108;441109;441110;441111;441112	441100			17	
VFTGVVTK	1	Unmodified	849.496	0.49600404	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.816	2	2	2								2	3	1	29.337	29.019	2	0.022018	24958	160511_QHF_FH_JSI11i_3	44.349	22.218			1.1149	1.0908	43.105	6	2	Median	NaN	NaN	NaN	0	0	Median	0.68255	0.8041	27.014	2	0	Median	1.2789	1.2225	33.145	3	1	Median	2.077	2.107	NaN	1	1	Median	415390000	204610000	210780000	0	0	0	98079000	61182000	36897000	215540000	103900000	111640000	101770000	39530000	62243000	54117	3438	50979	327351;327352;327353;327354;327355;327356	441113;441114;441115;441116	441113			4	
VFTKHGLLK	2	Acetyl (K)	1083.6441	0.64406526	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	49.179	40.017	3	0.0091291	21819	160513_QHF_FH_JSI11Kac_6	43.308	29.538			0.37866	0.34707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37866	0.34707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67908000	50912000	16996000	0	0	0	10686000	10686000	0	57222000	40226000	16996000	0	0	0	54118	4832	50980	327357;327358;327359	441117;441118;441119	441117	3243		3	
VFTKPVDPDEVPDYVTVIK	2	Unmodified	2160.1354	0.13543743	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	79.701	79.29	3	5.905E-05	69974	160511_QHF_FH_JSI9i_2	67.995	51.501			0.75819	0.7707	18.148	4	3	Median	0.87829	0.7552	NaN	1	0	Median	0.63281	0.78653	NaN	1	1	Median	0.65451	0.62547	NaN	1	1	Median	0.94709	0.97345	NaN	1	1	Median	213070000	113600000	99472000	20012000	10229000	9783400	10721000	4687100	6033600	82696000	49177000	33519000	99643000	49507000	50136000	54119	3133	50981	327360;327361;327362;327363	441120;441121;441122;441123	441121			4	
VFTLDVVLALLELPEREVDNTLSLEHQK	1	Unmodified	3219.7391	0.73909444	1542	P42695	NCAPD3	Condensin-2 complex subunit D3	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			101.21	95.487	4	1.5682E-15	56374	160513_QHF_FH_JSI10Kac_6	138.71	121.21			0.44591	0.52883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44591	0.52883	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44277000	36453000	7823300	0	0	0	44277000	36453000	7823300	0	0	0	0	0	0	54120	1542	50982	327364	441124	441124			1	
VFTQLGSVLK	1	Unmodified	1090.6386	0.63864553	3230	Q7L592	NDUFAF7	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.7	62.877	2	0.0016411	54224	160511_QHF_FH_JSI12i_3	64.654	37.4			1.1159	1.0599	16.677	4	1	Median	1.1852	0.96413	NaN	1	0	Median	0.86309	1.0459	NaN	1	0	Median	1.4793	1.4152	NaN	1	1	Median	1.0506	1.0742	NaN	1	0	Median	611360000	290200000	321160000	86971000	35107000	51864000	83581000	43543000	40038000	180400000	82201000	98196000	260410000	129350000	131060000	54121	3230	50983	327365;327366;327367;327368	441125;441126;441127;441128;441129	441129			5	
VFTSSTISGGYAEYALAADHTVYK	1	Unmodified	2550.2278	0.22783427	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	2	2	2	2	78.693	76.454	3	1.1154E-110	38155	160513_QHF_FH_JSI9Kac_6	240.13	213.72			1.0595	1.065	20.978	8	0	Median	1.0432	0.90199	17.659	2	0	Median	0.74836	0.89185	15.513	2	0	Median	1.2026	1.1832	9.051	2	0	Median	1.2132	1.2921	17.495	2	0	Median	1198500000	607240000	591270000	190750000	91029000	99719000	229160000	131070000	98085000	385890000	198280000	187610000	392720000	186860000	205850000	54122	2266	50984	327369;327370;327371;327372;327373;327374;327375;327376	441130;441131;441132;441133;441134;441135;441136;441137;441138;441139;441140;441141;441142;441143;441144;441145	441141			16	
VFTSSTISGGYAEYALAADHTVYKLPEK	2	Unmodified	3017.5022	0.50221822	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	82.312	81.815	4	1.5188E-26	70979	160511_QHF_FH_JSI12i_3	137.9	132.84			0.90498	0.94667	13.81	3	1	Median	NaN	NaN	NaN	0	0	Median	0.81125	0.94667	NaN	1	1	Median	0.90498	0.85392	NaN	1	0	Median	1.0939	1.1225	NaN	1	0	Median	585460000	294260000	291200000	0	0	0	37586000	13929000	23657000	279240000	145890000	133350000	268640000	134440000	134200000	54123	2266	50985	327377;327378;327379	441146;441147;441148;441149	441149			4	
VFTSWTGGGAAASR	0	Unmodified	1366.663	0.6629628	59	CON__P15636			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.38	7	13	23			1	5	8	15	23	24	13	12	49.404	44.888	2;3	1.8208E-55	21865	160513_QHF_FH_JSI9Kac_5	206.97	156.36		+	0.93559	0.9853	28.018	66	20	Median	0.8606	0.72012	16.441	20	8	Median	0.93742	1.081	26.086	21	10	Median	1.2145	1.1864	11.436	13	2	Median	0.92787	0.96577	18.89	12	0	Median	126640000000	63616000000	63027000000	33384000000	17797000000	15587000000	43968000000	23034000000	20935000000	30852000000	13728000000	17124000000	18438000000	9057300000	9380900000	54124	59	50986	327380;327381;327382;327383;327384;327385;327386;327387;327388;327389;327390;327391;327392;327393;327394;327395;327396;327397;327398;327399;327400;327401;327402;327403;327404;327405;327406;327407;327408;327409;327410;327411;327412;327413;327414;327415;327416;327417;327418;327419;327420;327421;327422;327423;327424;327425;327426;327427;327428;327429;327430;327431;327432;327433;327434;327435;327436;327437;327438;327439;327440;327441;327442;327443;327444;327445;327446;327447;327448;327449;327450;327451	441150;441151;441152;441153;441154;441155;441156;441157;441158;441159;441160;441161;441162;441163;441164;441165;441166;441167;441168;441169;441170;441171;441172;441173;441174;441175;441176;441177;441178;441179;441180;441181;441182;441183;441184;441185;441186;441187;441188;441189;441190;441191;441192;441193;441194;441195;441196;441197;441198;441199;441200;441201;441202;441203;441204;441205;441206;441207;441208;441209;441210;441211;441212;441213;441214;441215;441216;441217;441218;441219;441220;441221;441222;441223;441224;441225;441226;441227;441228;441229;441230;441231;441232;441233;441234;441235;441236;441237;441238;441239;441240;441241;441242;441243;441244;441245;441246;441247;441248;441249;441250;441251;441252;441253;441254;441255;441256;441257;441258;441259;441260;441261;441262;441263;441264;441265	441173			115	
VFTTGFSR	0	Unmodified	913.46577	0.46576654	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			34.223	32.802	2	0.032876	27328	160511_QHF_FH_JSI10i_3	49.442	30.711			0.68115	0.77573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68115	0.77573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	170290000	99324000	70963000	0	0	0	170290000	99324000	70963000	0	0	0	0	0	0	54125	4366	50987	327452	441266	441266			1	
VFTTNNGR	0	Unmodified	907.45118	0.45117911	130	O00422	SAP18	Histone deacetylase complex subunit SAP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.11		3	2					3		2	1	2	3	9.8143	6.0728	2	0.0027496	6447	160511_QHF_FH_JSI9i_2	77.741	47.022			1.1016	1.1191	21.879	8	1	Median	1.4811	1.235	7.8521	2	0	Median	0.78789	0.9235	NaN	1	0	Median	1.1016	1.1114	11.97	2	0	Median	1.3147	1.3989	34.695	3	1	Plateau	1385300000	509710000	875620000	444280000	202890000	241390000	2759300	1398500	1360900	189170000	79669000	109500000	749120000	225750000	523370000	54126	130	50988	327453;327454;327455;327456;327457;327458;327459;327460	441267;441268;441269;441270	441268			4	
VFTTQELVQAFTHAPATLEADR	0	Unmodified	2444.2336	0.23358835	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		2.67	0.471		1	2							1	1	1		101.26	101.18	3	1.3066E-18	88966	160511_QHF_FH_JSI9i_2	142.45	129			1.0774	1.0297	9.8501	3	1	Plateau	1.2002	1.0297	NaN	1	1	Median	1.0828	1.217	NaN	1	0	Median	1.0774	1.0228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4350400000	1997400000	2353000000	461460000	171270000	290190000	425040000	201910000	223140000	3463900000	1624200000	1839700000	0	0	0	54127	694	50989	327461;327462;327463	441271;441272	441272			2	
VFTTQELVQAFTHAPATLEADRGGK	1	Unmodified	2686.3715	0.37147881	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.02		3	6						1	2	2	5	1	98.113	97.105	3;4	7.5163E-52	82439	160511_QHF_FH_JSI10i_3	198.05	177.39			1.089	1.0348	24.868	10	2	Median	1.2278	1.0293	10.775	2	0	Median	0.84	0.99793	7.25	2	0	Median	1.0945	1.0806	35.148	5	2	Median	0.92476	0.93145	NaN	1	0	Median	2360500000	1145600000	1214900000	473740000	219300000	254440000	601400000	344230000	257170000	1111000000	506220000	604760000	174350000	75813000	98538000	54128	694	50990	327464;327465;327466;327467;327468;327469;327470;327471;327472;327473	441273;441274;441275;441276;441277;441278;441279;441280;441281;441282;441283;441284;441285;441286;441287;441288;441289;441290;441291;441292;441293;441294;441295;441296	441280			23	
VFTTVGSAEK	1	Unmodified	1037.5393	0.53932542	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.38	4	4	4			1	2		1	5	3	4	4	25.177	21.849	2	2.546E-09	19641	160511_QHF_FH_JSI11i_2	128.36	99.212			0.94006	0.99879	20.947	16	2	Median	1.2587	1.0369	17.104	5	1	Median	0.96806	1.1774	27.001	3	1	Median	0.88433	0.86477	8.7076	4	0	Median	0.87446	0.95999	10.658	4	0	Median	7175200000	3777500000	3397600000	1360000000	587380000	772620000	1328100000	814380000	513670000	2341200000	1131700000	1209500000	2145900000	1244100000	901870000	54129	1650	50991	327474;327475;327476;327477;327478;327479;327480;327481;327482;327483;327484;327485;327486;327487;327488;327489	441297;441298;441299;441300;441301;441302;441303;441304;441305;441306;441307;441308;441309;441310;441311;441312;441313;441314;441315;441316;441317;441318;441319;441320;441321;441322;441323;441324;441325;441326;441327;441328	441322			32	
VFTTVGSAEKR	1	Acetyl (K)	1235.651	0.65100113	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.707							2	4	2	2	2	1	3	40.16	30.451	2	1.3929E-13	16890	160513_QHF_FH_JSI9Kac_5	150.08	108.1			0.89021	1.0139	12.244	8	0	Median	1.2942	1.1056	10.372	2	0	Median	0.88688	1.0638	4.6302	2	0	Median	0.81069	0.79991	NaN	1	0	Median	0.86472	0.93749	5.2744	3	0	Median	379130000	197210000	181920000	39578000	17648000	21931000	148150000	78551000	69596000	48851000	28836000	20015000	142560000	72174000	70382000	54130	1650	50992	327490;327491;327492;327493;327494;327495;327496;327497	441329;441330;441331;441332;441333;441334;441335;441336	441329	1671		8	
VFVANPNK	1	Unmodified	887.4865	0.48650199	5561	Q9Y376	CAB39	Calcium-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	20.764	20.172	2	0.0063937	16607	160511_QHF_FH_JSI12i_2	62.714	42.432			1.0286	0.98196	21.291	7	4	Median	1.041	0.87851	16.867	2	2	Median	1.0286	1.2491	NaN	1	1	Median	1.2164	1.1673	24.458	2	1	Median	0.80961	0.86431	10.163	2	0	Median	568300000	304520000	263780000	134630000	69051000	65581000	52024000	29265000	22759000	168470000	89472000	79000000	213170000	116730000	96438000	54131	5561	50993	327498;327499;327500;327501;327502;327503;327504	441337;441338;441339;441340;441341;441342;441343;441344;441345;441346	441338			10	
VFVDGHQLFDFYHR	0	Unmodified	1778.8529	0.85288884	2826	Q3ZCW2	LGALSL	Galectin-related protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.457	77.062	4	0.047939	63481	160511_QHF_FH_JSI9i_3	18.731	12.15			0.92194	0.80361	NaN	1	1	Median	0.92194	0.80361	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4867000	2607100	2259900	4867000	2607100	2259900	0	0	0	0	0	0	0	0	0	54132	2826	50994	327505	441347	441347			1	
VFVDLLPATQCTK	1	Unmodified	1490.7803	0.78030075	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			75.339	74.588	2	0.0092439	66365	160511_QHF_FH_JSI10i_2	46.796	34.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54133	2592	50995	327506	441348	441348			1	
VFVEYIQPK	1	Unmodified	1121.6121	0.61209643	2497	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.957	54.014	2	0.002923	46307	160511_QHF_FH_JSI12i_2	62.573	53.66			0.88859	0.92529	1.7876	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94123	0.93706	NaN	1	0	Median	0.83888	0.91367	NaN	1	0	Median	91915000	56334000	35582000	0	0	0	0	0	0	53979000	32168000	21811000	37936000	24165000	13771000	54134	2497	50996	327507;327508	441349;441350	441349			2	
VFVGGLSPDTSEEQIK	1	Unmodified	1704.857	0.85703074	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.79	4.48	6	6	4				3			4	6	3	6	62.246	60.83	2;3	9.3222E-47	55446	160511_QHF_FH_JSI11i_1	259.55	215.78			0.85537	0.89201	16.818	17	10	Median	1.2108	1.0166	6.8725	4	1	Median	0.75831	0.90666	15.724	4	3	Median	0.84729	0.81338	27.123	3	3	Plateau	0.77096	0.84993	12.678	6	3	Median	4840300000	2676400000	2163900000	1146000000	554020000	592000000	1172500000	664000000	508540000	1145600000	615470000	530120000	1376100000	842860000	533260000	54135	230	50997	327509;327510;327511;327512;327513;327514;327515;327516;327517;327518;327519;327520;327521;327522;327523;327524;327525;327526;327527	441351;441352;441353;441354;441355;441356;441357;441358;441359;441360;441361;441362;441363;441364;441365;441366;441367;441368;441369;441370;441371;441372;441373;441374;441375;441376;441377;441378	441353			28	
VFVGGQINR	0	Unmodified	988.54541	0.54541385	1841	P55017	SLC12A3	Solute carrier family 12 member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			30.837	29.46	2	0.0028905	24452	160511_QHF_FH_JSI10i_3	62.714	43.984			1.223	1.195	1.142	2	1	Median	1.5135	1.2047	NaN	1	1	Median	0.98818	1.1854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185500000	86105000	99394000	94495000	41378000	53117000	91005000	44728000	46277000	0	0	0	0	0	0	54136	1841	50998	327528;327529	441379;441380;441381	441380			3	
VFVHYTGWLLDGTK	1	Unmodified	1634.8457	0.84567819	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.01		4	20						10	13	7	6	8	79.321	75.679	2;3	1.7678E-96	38678	160513_QHF_FH_JSI11Kac_6	249.23	212.53			0.95328	1.0002	19.511	28	8	Plateau	0.95856	0.78678	16.63	10	4	Median	0.72689	0.77592	13.311	5	0	Plateau	0.9998	0.94974	9.4575	6	2	Median	0.99023	1.0443	18.057	7	2	Median	46395000000	21498000000	24897000000	10302000000	3890800000	6411000000	12446000000	6448500000	5997500000	12186000000	6360600000	5825400000	11461000000	4798200000	6662800000	54137	2193	50999	327530;327531;327532;327533;327534;327535;327536;327537;327538;327539;327540;327541;327542;327543;327544;327545;327546;327547;327548;327549;327550;327551;327552;327553;327554;327555;327556;327557;327558;327559;327560;327561;327562;327563	441382;441383;441384;441385;441386;441387;441388;441389;441390;441391;441392;441393;441394;441395;441396;441397;441398;441399;441400;441401;441402;441403;441404;441405;441406;441407;441408;441409;441410;441411;441412;441413;441414;441415;441416;441417;441418;441419;441420;441421;441422;441423;441424;441425;441426;441427;441428;441429;441430;441431;441432;441433;441434;441435;441436;441437;441438;441439;441440;441441;441442;441443;441444;441445;441446;441447;441448;441449;441450;441451;441452;441453;441454;441455;441456;441457;441458;441459;441460;441461;441462;441463	441410			82	
VFVLDEADVMIATQGHQDQSIR	0	Unmodified	2471.2115	0.2114727	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		1	1									1	1	86.069	85.702	3	4.8001E-10	75288	160511_QHF_FH_JSI11i_2	106.35	98.167			0.70449	0.70884	27.51	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85761	0.86105	NaN	1	1	Median	0.57871	0.58353	NaN	1	1	Median	281760000	154090000	127670000	0	0	0	0	0	0	131750000	61784000	69970000	150010000	92310000	57700000	54138	5017;5423	51000	327564;327565	441464;441465	441464			2	
VFVMPNGMLK	1	Unmodified	1134.593	0.59295767	1950	P61289	PSME3	Proteasome activator complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	2	2	2	70.663	69.964	2	6.9966E-09	61125	160511_QHF_FH_JSI11i_2	127.12	95.888			1.0972	1.084	7.4838	8	1	Median	1.1871	0.99247	4.4568	2	0	Median	0.92949	1.1056	3.4466	2	1	Median	1.0649	1.0427	6.1569	2	0	Median	1.1122	1.1753	1.2276	2	0	Median	1659200000	777030000	882190000	330450000	146880000	183560000	346250000	159910000	186340000	571800000	280690000	291100000	410730000	189550000	221180000	54139	1950	51001	327566;327567;327568;327569;327570;327571;327572;327573	441466;441467;441468;441469;441470;441471;441472;441473;441474;441475;441476	441473			11	
VFVQKEILDK	2	Acetyl (K)	1259.7125	0.71253876	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		72.47	61.704	2	0.00056497	32975	160513_QHF_FH_JSI11Kac_5	90.15	66.12			0.28736	0.28095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28736	0.28095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11629000	9502200	2126400	0	0	0	0	0	0	11629000	9502200	2126400	0	0	0	54140	1645	51002	327574	441477	441477	1655		1	
VFVSPLAK	1	Unmodified	859.51674	0.51673948	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	3	3	1	47.446	46.799	2	0.0046723	39375	160511_QHF_FH_JSI10i_3	67.981	48.344			1.0348	0.97593	21.587	8	0	Median	1.1359	0.96972	NaN	1	0	Median	0.68045	0.83312	32.469	3	0	Median	0.96959	0.98218	11.046	3	0	Median	1.3269	1.3112	NaN	1	0	Median	1260500000	626520000	634030000	150690000	66195000	84493000	297450000	178120000	119330000	590380000	297460000	292920000	222040000	84750000	137290000	54141	970	51003	327575;327576;327577;327578;327579;327580;327581;327582	441478;441479;441480;441481;441482;441483;441484;441485;441486	441481			9	
VFVVGVGMTK	1	Unmodified	1035.5787	0.57868781	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	66.957	57.896	2	0.0027364	31868	160513_QHF_FH_JSI10Kac_6	72.643	49.215			0.75786	0.75817	10.431	4	0	Median	0.84764	0.71461	NaN	1	0	Median	0.67759	0.79822	NaN	1	0	Median	0.92897	0.89229	NaN	1	0	Median	0.66126	0.72012	NaN	1	0	Median	152500000	85106000	67391000	31898000	15163000	16734000	36402000	23414000	12988000	71860000	38879000	32981000	12338000	7649900	4688200	54142	1207	51004	327583;327584;327585;327586	441487;441488;441489;441490	441490			4	
VFWDPSVNLFGHVGSTTASR	0	Unmodified	2176.0702	0.070151836	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							2	2	2	1	90.162	89.637	3	3.8907E-10	75294	160511_QHF_FH_JSI10i_3	114.88	101.85			1.0292	0.92482	91.007	7	2	Median	1.186	0.99366	13.154	2	0	Median	0.9788	1.1377	34.684	2	1	Median	0.3244	0.30476	163.27	2	1	Median	0.91848	0.92482	NaN	1	0	Median	399900000	228630000	171270000	73334000	34479000	38855000	118880000	65591000	53294000	151360000	96530000	54835000	56313000	32030000	24283000	54143	412	51005	327587;327588;327589;327590;327591;327592;327593	441491;441492;441493;441494;441495;441496;441497;441498;441499	441494			8	
VFWIAGIVK	1	Unmodified	1031.6168	0.61678788	2236	Q05BQ5	MBTD1	MBT domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	2	1	2	2	87.69	84.779	2	0.0045695	76444	160511_QHF_FH_JSI12i_3	66.682	55.809			1.1472	1.096	21.066	7	2	Median	1.1587	1.0048	12.289	2	0	Median	0.97494	1.1809	NaN	1	0	Median	1.2605	1.1871	16.244	2	0	Median	0.90541	0.97358	40.957	2	2	Median	131710000	63123000	68585000	42869000	17382000	25487000	5673700	2726000	2947700	60984000	31595000	29389000	22180000	11420000	10761000	54144	2236	51006	327594;327595;327596;327597;327598;327599;327600	441500;441501;441502;441503	441502			4	
VFWLPHNMDFR	0	Unmodified	1460.7023	0.7023252	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.615	73.974	3	0.00059777	40458	160513_QHF_FH_JSI10Kac_6	64.792	53.209			0.84922	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84922	1.0113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77702000	40475000	37227000	0	0	0	77702000	40475000	37227000	0	0	0	0	0	0	54145	128	51007	327601	441504;441505	441505			2	
VFWTDIINEAIFSANR	0	Unmodified	1894.9577	0.95774784	787	P01130	LDLR	Low-density lipoprotein receptor	yes	yes	0	0	0	0			By matching	By MS/MS	8.2	6.37			3						2			1	4	100.85	97.082	2;3	7.101E-16	89385	160511_QHF_FH_JSI12i_3	124.16	115.6			0.97416	0.98085	19.202	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0911	0.98085	NaN	1	0	Median	0.92122	1.0054	21.883	4	1	Median	381040000	192450000	188590000	0	0	0	0	0	0	52508000	22642000	29866000	328530000	169810000	158720000	54146	787	51008	327602;327603;327604;327605;327606	441506;441507;441508;441509	441506			4	
VFYELQHSDKPVGTK	2	Unmodified	1746.8941	0.89408495	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							1	3	3	2	34.139	33.577	3;4	3.9403E-07	28124	160511_QHF_FH_JSI10i_3	132.05	119.9			1.0895	1.1139	30.502	9	3	Median	1.2982	1.1139	NaN	1	1	Median	0.93005	1.0707	10.742	3	0	Plateau	2.2237	2.1205	59.824	3	2	Plateau	1.0897	1.1112	1.1383	2	0	Median	2964100000	1163500000	1800700000	29976000	7612900	22363000	298850000	137300000	161550000	1556100000	514660000	1041400000	1079200000	503890000	575330000	54147	3922	51009	327607;327608;327609;327610;327611;327612;327613;327614;327615	441510;441511;441512;441513;441514;441515;441516;441517;441518;441519;441520;441521	441515			12	
VFYELQHSDKPVGTK	2	Acetyl (K)	1788.9046	0.90464964	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.7	0.471								1	2		1	1	1	56.399	46.338	3	0.0092148	25070	160513_QHF_FH_JSI11Kac_6	42.647	32.898			0.46269	0.44672	112.35	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0092	1.1964	NaN	1	0	Median	0.46269	0.44672	NaN	1	0	Median	0.11499	0.12716	NaN	1	1	Median	30601000	21255000	9346500	0	0	0	3939300	1525300	2414000	22381000	15908000	6473300	4281100	3821900	459250	54148	3922	51009	327616;327617;327618	441522;441523;441524	441522	3004		3	
VFYFTSSSVNSSAYTIYMGK	1	Unmodified	2251.0507	0.050721527	3363	Q86WR0	CCDC25	Coiled-coil domain-containing protein 25	yes	yes	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	85.445	76.064	3	4.1292E-08	40583	160513_QHF_FH_JSI12Kac_6	97.32	88.156			1.1265	1.1227	7.5433	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.264	1.1842	NaN	1	0	Median	1.0039	1.0644	NaN	1	0	Median	84291000	34657000	49634000	0	0	0	0	0	0	53354000	21196000	32158000	30938000	13461000	17476000	54149	3363	51010	327619;327620	441525	441525			1	
VFYIGLR	0	Unmodified	866.50142	0.50142377	4598	Q9GZP4	PITHD1	PITH domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			4						3	2	1	2	2	64.527	60.056	2	0.0008409	32746	160513_QHF_FH_JSI11Kac_6	112.95	85.634			1.0498	0.97883	12.816	7	1	Median	1.3069	1.1097	5.9674	2	1	Median	0.83806	0.94345	NaN	1	0	Median	1.1288	1.0766	13.458	2	0	Median	0.85277	0.88459	10.609	2	0	Median	696560000	347760000	348790000	189170000	94437000	94735000	106680000	55718000	50959000	190870000	91273000	99595000	209840000	106340000	103500000	54150	4598	51011	327621;327622;327623;327624;327625;327626;327627	441526;441527;441528;441529;441530;441531	441528			6	
VFYLKMK	2	Acetyl (K);Oxidation (M)	985.53067	0.53067499	2051;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta	no	no	1	0	1	1		By matching	By MS/MS	By matching	16	0									3		1	1	1	53.578	44.191	2	0.038016	23933	160513_QHF_FH_JSI11Kac_6	50.966	30.267			0.34748	0.32403	49.304	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.71704	0.86864	NaN	1	0	Median	0.34748	0.32403	NaN	1	0	Median	0.49349	0.53052	NaN	1	0	Median	110190000	74520000	35673000	0	0	0	20857000	11136000	9721500	62462000	47678000	14785000	26873000	15706000	11167000	54151	1976;1288;1384;2051;1385;2224	51012	327628;327629;327630	441532	441532			1	
VFYLKMK	2	Acetyl (K)	969.53576	0.53576037	2051;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	68.497	59.429	2	0.042458	32311	160513_QHF_FH_JSI11Kac_6	62.714	55.147			0.5153	0.55336	59.969	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9538	1.0985	NaN	1	0	Median	0.34582	0.33249	NaN	1	0	Median	0.5153	0.55336	NaN	1	0	Median	833620000	530740000	302880000	0	0	0	182290000	105670000	76625000	511240000	328800000	182440000	140090000	96271000	43820000	54152	1976;1288;1384;2051;1385;2224	51012	327631;327632;327633	441533;441534;441535	441533			3	
VFYLKMK	2	Unmodified	927.5252	0.52519568	2051;1384;1976;1288;2224;1385	P61981;P27348;P31946;P63104;P31947;Q04917	YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAH	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein eta	no	no	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	40.944	40.734	3	0.023964	33623	160511_QHF_FH_JSI9i_3	35.88	24.287			3.5608	4.1614	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.5608	4.1614	NaN	1	1	Median	72519000	23523000	48997000	0	0	0	0	0	0	0	0	0	72519000	23523000	48997000	54153	1976;1288;1384;2051;1385;2224	51012	327634;327635	441536;441537	441536			2	
VFYSLMR	0	Unmodified	914.46841	0.46840908	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			58.903	50.446	2	0.023546	27781	160513_QHF_FH_JSI10Kac_6	67.035	49.268			0.85388	1.0221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85388	1.0221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259680000	137480000	122200000	0	0	0	259680000	137480000	122200000	0	0	0	0	0	0	54154	862	51013	327636	441538	441538			1	
VFYYKMK	2	Acetyl (K);Oxidation (M)	1035.5099	0.50993955	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	1	1			By MS/MS	By MS/MS	16	0									2			1	1	43.775	34.213	2	0.039408	18679	160513_QHF_FH_JSI11Kac_6	50.025	33.551			0.36935	0.376	37.656	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2942	0.2881	NaN	1	0	Median	0.4637	0.49071	NaN	1	0	Median	59839000	46337000	13502000	0	0	0	0	0	0	41538000	33182000	8355700	18301000	13154000	5146700	54155	1990	51014	327637;327638	441539;441540	441539			2	
VFYYKMK	2	Acetyl (K)	1019.515	0.51502492	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	56.094	46.763	2	0.05313	25651	160513_QHF_FH_JSI10Kac_6	59.205	46.217			0.70943	0.67129	57.964	4	0	Median	1.0186	0.86897	NaN	1	0	Median	1.142	1.3705	NaN	1	0	Median	0.38961	0.36593	NaN	1	0	Median	0.49411	0.51858	NaN	1	0	Median	354050000	230510000	123540000	17527000	10434000	7092700	92853000	38626000	54227000	205900000	156370000	49522000	37778000	25077000	12701000	54156	1990	51014	327639;327640;327641;327642	441541	441541			1	
VFYYLVQDLK	1	Unmodified	1286.6911	0.69107503	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	6.71	3	8	3				1	4	6	6	8	7	4	80.892	76.515	2	5.2775E-09	40738	160513_QHF_FH_JSI10Kac_6	125.82	106.5			0.78412	0.75725	70.213	25	19	Median	0.81406	0.69505	67.084	6	5	Median	0.60231	0.70262	75.335	8	6	Median	0.70879	0.69682	86.853	7	6	Median	1.0405	1.1125	51.982	4	2	Median	14522000000	6713500000	7808600000	4413700000	1620900000	2792800000	4371000000	2218000000	2153000000	3421000000	1635300000	1785600000	2316500000	1239200000	1077300000	54157	1952;3963	51015	327643;327644;327645;327646;327647;327648;327649;327650;327651;327652;327653;327654;327655;327656;327657;327658;327659;327660;327661;327662;327663;327664;327665;327666;327667	441542;441543;441544;441545;441546;441547;441548;441549;441550;441551;441552;441553;441554;441555;441556;441557;441558;441559;441560;441561;441562;441563;441564;441565;441566;441567;441568;441569;441570;441571	441570			30	
VGAAEEELQK	1	Unmodified	1072.5401	0.5400537	5213	Q9P2E9	RRBP1	Ribosome-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.331	19.822	2	2.2159E-07	16955	160511_QHF_FH_JSI10i_1	116.05	85.975			0.96578	0.94136	28.262	4	0	Median	1.0659	0.85847	NaN	1	0	Median	0.87505	1.0323	NaN	1	0	Median	1.0936	1.0729	NaN	1	0	Median	0.55271	0.57839	NaN	1	0	Median	704140000	335220000	368930000	178910000	75754000	103160000	143250000	74442000	68810000	185450000	80398000	105050000	196530000	104620000	91906000	54158	5213	51016	327668;327669;327670;327671	441572;441573;441574;441575;441576;441577;441578	441576			7	
VGAAEIISR	0	Unmodified	914.51853	0.5185304	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	33.166	32.435	2	0.00017327	27607	160511_QHF_FH_JSI12i_3	87.308	30.578			1.1042	1.0627	23.284	4	0	Median	1.46	1.1898	NaN	1	0	Median	0.64694	0.75054	NaN	1	0	Median	1.3108	1.2453	NaN	1	0	Median	0.93018	0.94923	NaN	1	0	Median	390210000	201060000	189150000	29260000	11214000	18046000	32681000	18183000	14498000	129650000	56132000	73518000	198620000	115540000	83087000	54159	542	51017	327672;327673;327674;327675	441579;441580	441579			2	
VGAAISMTYITSK	1	Unmodified	1340.701	0.70098779	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	7.16	2	3							4	2	3	1	3	88.657	84.663	2	2.692E-20	33355	160513_QHF_FH_JSI11Kac_6	158.41	133.63			0.55245	0.5686	109.67	9	6	Median	0.37253	0.31562	147.03	2	1	Median	0.062249	0.075924	141.78	3	3	Plateau	0.98716	0.946	NaN	1	0	Median	0.10707	0.11798	101.44	3	2	Plateau	724960000	557700000	167260000	116430000	90636000	25796000	273600000	215710000	57887000	72307000	37813000	34494000	262620000	213530000	49087000	54160	899	51018	327676;327677;327678;327679;327680;327681;327682;327683;327684	441581;441582;441583;441584;441585;441586;441587;441588;441589;441590;441591;441592	441584			12	
VGAAISMTYITSK	1	Oxidation (M)	1356.6959	0.69590241	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.829							2	2	4	1	1	3	3	53.738	43.683	2	0.002146	25398	160513_QHF_FH_JSI11Kac_4	65.842	49.878			0.75889	0.74554	35.902	7	1	Median	1.3123	1.1443	NaN	1	0	Median	1.2868	1.5397	NaN	1	1	Median	0.92139	0.90259	27.035	2	0	Median	0.53321	0.5747	10.985	3	0	Plateau	43242000	21959000	21283000	9456400	3782900	5673500	9538800	4092800	5446000	11104000	5648700	5455400	13142000	8434300	4708200	54161	899	51018	327685;327686;327687;327688;327689;327690;327691;327692	441593;441594;441595;441596;441597;441598;441599;441600;441601	441595		477	9	
VGAEDADGIDMAYR	0	Oxidation (M)	1497.6406	0.64057238	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.951	37.334	2	0.0020871	33846	160511_QHF_FH_JSI11i_1	63.624	46.992			1.2247	1.2454	29.348	4	0	Median	2.1254	1.795	NaN	1	0	Median	0.86596	1.0315	NaN	1	0	Median	1.5903	1.5037	NaN	1	0	Median	0.94319	0.97948	NaN	1	0	Median	217390000	103280000	114110000	27543000	7568600	19974000	60469000	32907000	27562000	65092000	27459000	37632000	64286000	35342000	28944000	54162	1664	51019	327693;327694;327695;327696	441602;441603;441604;441605	441602		1352	4	
VGAEDADGIDMAYR	0	Unmodified	1481.6457	0.64565776	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.345	47.663	2	1.6568E-14	43198	160511_QHF_FH_JSI12i_1	155.48	143.89			0.90081	0.91838	13.13	4	1	Median	1.4515	1.1885	NaN	1	0	Median	0.79481	0.92024	NaN	1	1	Median	0.95343	0.91653	NaN	1	0	Median	0.8511	0.90621	NaN	1	0	Median	4357700000	2363100000	1994600000	832050000	370950000	461110000	1136800000	683260000	453580000	1124400000	667060000	457360000	1264400000	641860000	622530000	54163	1664	51019	327697;327698;327699;327700	441606;441607;441608;441609;441610;441611;441612;441613	441609			8	
VGAEELTADQNLK	1	Unmodified	1386.6991	0.69907354	1871	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.277	40.632	2	5.1632E-05	36621	160511_QHF_FH_JSI11i_1	110.93	81.158			0.97639	1.0351	24.803	4	0	Median	1.4339	1.1947	NaN	1	0	Median	0.86825	1.0158	NaN	1	0	Median	1.098	1.0547	NaN	1	0	Median	0.6547	0.67435	NaN	1	0	Median	521050000	291280000	229770000	97616000	46220000	51395000	147470000	86120000	61346000	148590000	80662000	67933000	127380000	78280000	49098000	54164	1871	51020	327701;327702;327703;327704	441614;441615;441616;441617;441618;441619	441615			6	
VGAENVAIVEPSER	0	Unmodified	1468.7522	0.75217174	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By matching		By MS/MS	By matching	1	0	3									1		1	1	45.142	44.388	2	0.010053	40052	160511_QHF_FH_JSI11i_1	77.894	67.437			1.0026	0.82158	13.141	3	0	Median	1.0026	0.82158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.058	1.0301	NaN	1	0	Median	0.79708	0.81926	NaN	1	0	Median	291270000	150740000	140530000	90340000	43250000	47090000	0	0	0	104480000	52577000	51902000	96449000	54911000	41537000	54165	5743	51021	327705;327706;327707	441620	441620			0	
VGAFTMVCK	1	Unmodified	1011.4882	0.48815825	773	P00505	GOT2	Aspartate aminotransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								2	2	1	45.617	44.734	2	0.0023102	37442	160511_QHF_FH_JSI10i_3	65.246	47.261			1.0849	1.227	21.053	5	1	Median	NaN	NaN	NaN	0	0	Median	1.072	1.2643	8.2735	2	0	Median	1.078	1.0634	37.139	2	1	Median	1.0849	1.227	NaN	1	0	Median	1190000000	555780000	634210000	0	0	0	362200000	180180000	182020000	690220000	316020000	374190000	137580000	59579000	77998000	54166	773	51022	327708;327709;327710;327711;327712	441621;441622;441623;441624;441625;441626;441627;441628	441625			8	
VGAGAGAAPFREVDEISPEDDQR	0	Unmodified	2385.1197	0.1196808	4254	Q96T37	RBM15	Putative RNA-binding protein 15	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		57.194	57.194	3	0.0033745	50683	160511_QHF_FH_JSI11i_3	38.583	29.764			1.0901	1.0288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0901	1.0288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22382000	8436000	13946000	0	0	0	0	0	0	22382000	8436000	13946000	0	0	0	54167	4254	51023	327713	441629	441629			1	
VGAGAPVYLAAVLEYLTAEILELAGNAAR	0	Unmodified	2914.5804	0.58040896	819;1091	Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;P16104	HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;H2AFX	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2AX	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	1.79					2		1		2		2	2	1	106.88	98.893	3;4	1.0845E-54	59928	160513_QHF_FH_JSI10Kac_6	229.89	212.1			4.0483	4.453	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0483	4.453	NaN	1	1	Median	2510900000	97348	2510800000	0	0	0	2471800000	0	2471800000	37737000	0	37737000	1413500	97348	1316200	54168	819;1091	51024	327714;327715;327716;327717;327718	441630;441631;441632;441633;441634;441635	441634			6	
VGAGAPVYMAAVLEYLTAEILELAGNAAR	0	Unmodified	2932.5368	0.53682958	2765	Q16777;Q6FI13	HIST2H2AC;HIST2H2AA3	Histone H2A type 2-C;Histone H2A type 2-A	yes	no	0	0	0	0		By MS/MS			16	0									1		1			106.4	100.68	3	2.8559E-59	59688	160513_QHF_FH_JSI10Kac_6	179.47	166.53			1.7586	2.089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7586	2.089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1511900000	511200000	1000700000	0	0	0	1511900000	511200000	1000700000	0	0	0	0	0	0	54169	2765	51025	327719	441636;441637	441637			2	
VGAGDSQLK	1	Unmodified	873.4556	0.45559579	1557	P43246	MSH2	DNA mismatch repair protein Msh2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		11.422	11.017	2	0.0064476	8825	160511_QHF_FH_JSI10i_1	55.676	16.884			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54170	1557	51026	327720;327721;327722	441638;441639;441640	441639			3	
VGAIPANALDDGQWSQGLISAAR	0	Unmodified	2309.1764	0.17640782	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	2	1	1	93.026	92.731	2;3	7.2322E-17	84043	160511_QHF_FH_JSI10i_1	134.14	106.48			0.99264	1.0728	19.601	6	1	Median	1.59	1.3565	17.498	2	0	Median	0.82282	0.94329	4.5341	2	1	Median	1.141	1.1815	NaN	1	0	Median	0.86355	0.95665	NaN	1	0	Median	353270000	170050000	183220000	102630000	37024000	65608000	181210000	97363000	83850000	35516000	16596000	18920000	33911000	19065000	14846000	54171	5616	51027	327723;327724;327725;327726;327727;327728	441641;441642;441643;441644;441645;441646;441647;441648;441649	441644			9	
VGASASDGSVCVLDLRK	1	Unmodified	1732.8778	0.87778296	4568;459	Q9BZK7;O60907	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	no	no	0	0	0	1			By MS/MS	By MS/MS	3	0			3									2	1	50.005	49.926	3	0.00019869	44205	160511_QHF_FH_JSI11i_3	72.184	42.451			1.0226	0.98978	39.738	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9968	0.92973	52.487	2	2	Median	0.71368	0.72701	NaN	1	0	Median	174080000	83371000	90705000	0	0	0	0	0	0	132520000	60912000	71612000	41552000	22459000	19092000	54172	4568;459	51028	327729;327730;327731	441650;441651;441652;441653	441651			4	
VGATAAVYSAAILEYLTAEVLELAGNASK	1	Unmodified	2894.5277	0.52770468	945	P0C0S5;Q71UI9	H2AFZ;H2AFV	Histone H2A.Z;Histone H2A.V	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.4		1							8	3	3	1	2	105.37	98.262	2;3;4	0	59002	160513_QHF_FH_JSI10Kac_6	349.91	317.76			0.848	0.99977	33.928	9	2	Median	1.5232	1.2917	20.93	3	1	Median	0.848	0.99977	8.0507	3	0	Plateau	2.3511	2.2735	NaN	1	1	Median	0.80984	0.85719	0.72946	2	0	Median	2053800000	1156400000	897350000	130460000	63550000	66910000	1803300000	1032300000	771000000	8574800	1900000	6674800	111440000	58675000	52763000	54173	945	51029	327732;327733;327734;327735;327736;327737;327738;327739;327740	441654;441655;441656;441657;441658;441659;441660;441661;441662;441663;441664;441665;441666	441666			13	
VGATLALMWLK	1	Unmodified	1201.6893	0.68930089	5150	Q9NZD2	GLTP	Glycolipid transfer protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	10.8	6.37			2						3	1		2	2	93.024	87.536	2	5.024E-05	44791	160513_QHF_FH_JSI9Kac_6	101.65	82.866			1.1097	1.1366	22.588	5	1	Median	1.8798	1.6257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1452	1.0832	6.7988	2	0	Median	0.96983	1.0004	18.482	2	0	Median	158200000	77988000	80213000	46013000	18148000	27866000	0	0	0	70062000	36552000	33511000	42126000	23289000	18837000	54174	5150	51030	327741;327742;327743;327744;327745	441667;441668;441669;441670;441671	441669			5	
VGAVAAATS	0	Unmodified	745.39702	0.39701828	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	5	1			1								1	1	21.764	14.373	1;2	0.0072961	13793	160511_QHF_FH_JSI12i_1	54.525	54.525			1.0971	1.0756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0971	1.0756	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5431600	2560400	2871200	0	0	0	0	0	0	5431600	2560400	2871200	0	0	0	54175	2385	51031	327746;327747	441672;441673	441672			1	
VGAVDADK	1	Unmodified	773.39193	0.3919329	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	10.03	6.7098	2	0.0065921	6633	160511_QHF_FH_JSI12i_1	62.107	31.604			0.76876	0.82994	25.981	7	0	Median	0.99882	0.82994	NaN	1	0	Median	0.629	0.75277	25.679	2	0	Median	1.0625	1.0475	46.492	2	0	Median	0.79504	0.86149	9.8449	2	0	Median	7435300000	3744400000	3690800000	1633400000	690690000	942760000	2111700000	1084100000	1027600000	1827300000	960390000	866900000	1862800000	1009200000	853620000	54176	2628	51032	327748;327749;327750;327751;327752;327753;327754	441674;441675;441676;441677;441678;441679;441680	441675			7	
VGAVDADKHHSLGGQYGVQGFPTIK	2	Acetyl (K)	2622.319	0.31904931	2628	Q15084	PDIA6	Protein disulfide-isomerase A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		71.787	63.309	3;4	1.1174E-19	34209	160513_QHF_FH_JSI11Kac_6	177.3	150.02			1.2575	1.3271	211.45	2	1	Median	NaN	NaN	NaN	0	0	Median	5.0238	5.9191	NaN	1	1	Median	0.31474	0.29753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	207700000	145960000	61735000	0	0	0	46227000	17498000	28729000	161470000	128460000	33005000	0	0	0	54177	2628	51033	327755;327756;327757;327758	441681;441682;441683;441684;441685	441683	2596		5	
VGDAIPAVEVFEGEPGNK	1	Unmodified	1826.905	0.90504357	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								2	4	5	3	78.262	77.67	2;3	1.552E-52	70804	160511_QHF_FH_JSI12i_1	213.18	201.32			0.9926	1.0518	18.617	13	2	Median	1.4646	1.1846	7.5952	2	0	Median	0.93157	1.1275	9.6936	4	0	Median	1.091	1.0571	18.035	4	2	Median	0.86205	0.91334	16.197	3	0	Plateau	3310700000	1693100000	1617600000	543880000	228520000	315350000	1082800000	580130000	502710000	964730000	484650000	480080000	719250000	399750000	319500000	54178	1335	51034	327759;327760;327761;327762;327763;327764;327765;327766;327767;327768;327769;327770;327771;327772	441686;441687;441688;441689;441690;441691;441692;441693;441694;441695;441696;441697;441698;441699;441700;441701;441702;441703;441704;441705;441706;441707;441708;441709;441710;441711;441712;441713;441714;441715;441716;441717;441718;441719;441720;441721;441722	441698			36	
VGDDPAVWQLK	1	Unmodified	1226.6295	0.62953741	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	58.118	57.466	2	4.9161E-05	50981	160511_QHF_FH_JSI9i_1	95.642	69.228			0.81687	0.82492	6.6521	4	0	Median	0.9097	0.7381	NaN	1	0	Median	0.72072	0.84713	NaN	1	0	Median	0.87357	0.85207	NaN	1	0	Median	0.76385	0.80328	NaN	1	0	Median	800770000	398380000	402390000	181760000	89530000	92227000	253730000	150050000	103680000	207150000	85740000	121410000	158130000	73058000	85069000	54179	5616	51035	327773;327774;327775;327776	441723;441724;441725;441726;441727;441728	441727			6	
VGDFGDAINWPTPGEIAHK	1	Unmodified	2022.9799	0.97993984	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	81.775	81.345	3	9.0023E-10	70643	160511_QHF_FH_JSI12i_3	117.78	112.49			0.99296	1.0148	16.893	5	0	Median	1.4831	1.2803	NaN	1	0	Median	0.83298	1.0148	NaN	1	0	Median	1.0561	1.0341	4.3333	2	0	Median	0.78067	0.79804	NaN	1	0	Median	748680000	395200000	353480000	49026000	17809000	31217000	127060000	74292000	52765000	274810000	132980000	141830000	297780000	170110000	127670000	54180	3132	51036	327777;327778;327779;327780;327781	441729;441730;441731;441732;441733;441734;441735;441736;441737;441738;441739;441740;441741;441742;441743	441743			15	
VGDGDLSAEEIPENEVSLR	0	Unmodified	2027.9647	0.96474329	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	66.386	65.857	2	4.7777E-16	59903	160511_QHF_FH_JSI11i_1	173.25	150.72			0.55672	0.54575	56.09	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84454	0.81141	NaN	1	1	Median	0.36698	0.36707	NaN	1	1	Median	30132000	17008000	13124000	0	0	0	0	0	0	20155000	9339500	10816000	9976300	7668500	2307700	54181	2561	51037	327782;327783	441744;441745	441744			2	
VGDGDLSAEEIPENEVSLRR	0	Unmodified	2184.0659	0.065854319	2561	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			58.384	57.441	3	0.0012699	50775	160511_QHF_FH_JSI10i_2	44.788	29.534			2.0424	2.0727	52.016	2	2	Median	1.7224	1.4348	NaN	1	1	Median	2.4219	2.9942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	250190000	58470000	191720000	69014000	21547000	47468000	181180000	36923000	144260000	0	0	0	0	0	0	54182	2561	51038	327784;327785	441746;441747	441747			2	
VGDGMNAYMAYR	0	Unmodified	1346.5747	0.57474142	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.345	47.361	2	7.494E-05	41558	160511_QHF_FH_JSI9i_2	94.409	92.373			0.88954	0.98489	16.805	4	0	Median	1.3407	1.1494	NaN	1	0	Median	0.73112	0.87805	NaN	1	0	Median	1.0823	1.1047	NaN	1	0	Median	0.72826	0.81737	NaN	1	0	Median	534200000	290700000	243500000	86809000	40300000	46509000	118200000	72262000	45941000	190570000	96998000	93567000	138620000	81141000	57482000	54183	444	51039	327786;327787;327788;327789	441748;441749;441750;441751;441752	441749			5	
VGDGVYLPPEAFTFNIK	1	Unmodified	1865.9564	0.95635086	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		100.85	100.78	2	0.0008574	91474	160511_QHF_FH_JSI10i_1	72.891	49.286			0.93512	1.0246	4.032	2	2	Median	NaN	NaN	NaN	0	0	Median	0.92733	1.0543	NaN	1	1	Median	0.94298	0.99584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	62097000	26178000	35918000	0	0	0	24151000	8917500	15234000	37946000	17261000	20685000	0	0	0	54184	1273	51040	327790;327791	441753;441754	441753			2	
VGDHQFLLYSGR	0	Unmodified	1390.6993	0.69934831	3471	Q8IYS2	KIAA2013	Uncharacterized protein KIAA2013	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			48.898	47.316	3	0.0020014	39522	160511_QHF_FH_JSI10i_3	58.487	50.182			1.3368	1.5157	44.611	3	3	Median	3.4948	2.8665	NaN	1	1	Median	1.1912	1.3563	15.715	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97554000	34007000	63548000	23480000	5171600	18309000	74074000	28835000	45239000	0	0	0	0	0	0	54185	3471	51041	327792;327793;327794	441755;441756;441757	441755			3	
VGDITILVNNAAVVHGK	1	Unmodified	1718.9679	0.9679186	582	O75911	DHRS3	Short-chain dehydrogenase/reductase 3	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	69.845	69.696	3	4.3452E-05	62114	160511_QHF_FH_JSI11i_3	72.523	55.857			0.93759	0.92618	14.004	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89159	0.83886	NaN	1	0	Median	0.98596	1.0226	NaN	1	0	Median	70933000	38908000	32025000	0	0	0	0	0	0	31136000	16618000	14519000	39797000	22290000	17507000	54186	582	51042	327795;327796	441758	441758			1	
VGDKVLLPEYGGTK	2	Acetyl (K)	1516.8137	0.81370936	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	13.5	0.5						3	3				3		3	72.596	63.016	2;3	0.0035319	31467	160513_QHF_FH_JSI10Kac_3	65.395	38.881			0.85271	1.0216	23.359	6	0	Median	NaN	NaN	NaN	0	0	Median	0.87425	1.0688	5.8664	3	0	Median	NaN	NaN	NaN	0	0	Median	0.58443	0.63122	27.999	3	0	Plateau	26890000	14285000	12604000	0	0	0	15139000	7352400	7786700	0	0	0	11751000	6933100	4817700	54187	1959	51043	327797;327798;327799;327800;327801;327802	441759;441760;441761;441762;441763;441764;441765;441766	441766	1975		8	
VGDLILAHLHK	1	Unmodified	1214.7135	0.71354181	2855	Q53GS7	GLE1	Nucleoporin GLE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	51.512	50.545	3;4	0.00040262	42858	160511_QHF_FH_JSI12i_3	60.434	47.08			1.2568	1.2956	56.979	7	2	Median	1.7604	1.4336	1.8963	2	0	Median	1.014	1.1651	7.4329	2	0	Median	3.2731	3.0418	NaN	1	1	Median	0.72376	0.75284	76.78	2	1	Median	269510000	132960000	136550000	76796000	31455000	45342000	84617000	41013000	43604000	20049000	5131100	14917000	88048000	55360000	32688000	54188	2855	51044	327803;327804;327805;327806;327807;327808;327809;327810	441767;441768;441769;441770;441771;441772;441773;441774;441775;441776;441777;441778;441779	441778			13	
VGDNVLHLAQR	0	Unmodified	1220.6626	0.66256887	3106	Q6P4F2	FDX1L	Adrenodoxin-like protein, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		38.617	37.623	3	0.0011263	31444	160511_QHF_FH_JSI10i_3	47.154	38.929			1.1317	1.0983	35.181	3	0	Plateau	2.5102	2.0967	NaN	1	0	Median	1.0256	1.1934	NaN	1	0	Median	1.1317	1.0983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115100000	52995000	62103000	14091000	2863200	11227000	37387000	20105000	17282000	63621000	30027000	33594000	0	0	0	54189	3106	51045	327811;327812;327813	441780	441780			1	
VGDPQELNGITR	0	Unmodified	1297.6626	0.66262845	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.95	4	3				1	3			2	3	3	3	42.894	38.795	2	1.3426E-05	35199	160511_QHF_FH_JSI11i_1	115.57	84.08			0.91111	0.9081	19.415	11	0	Median	1.4763	1.2261	2.4392	2	0	Median	1.0112	1.2003	8.9457	3	0	Plateau	0.91111	0.8955	1.2597	3	0	Median	0.68275	0.74934	5.0121	3	0	Median	5901500000	3069900000	2831600000	965870000	440980000	524890000	1839900000	874820000	965030000	1649300000	884520000	764770000	1446500000	869580000	576890000	54190	1650	51046	327814;327815;327816;327817;327818;327819;327820;327821;327822;327823;327824	441781;441782;441783;441784;441785;441786;441787;441788;441789;441790;441791;441792;441793;441794;441795;441796;441797	441782			17	
VGDPVYLLGQ	0	Unmodified	1059.5601	0.56006086	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	76.546	76.067	2	0.00042079	69012	160511_QHF_FH_JSI10i_1	75.109	70.202			1.0102	1.0931	35.276	4	0	Median	1.7662	1.4453	NaN	1	0	Median	1.0549	1.2624	NaN	1	0	Median	0.96733	0.94644	NaN	1	0	Median	0.63586	0.65137	NaN	1	0	Median	306000000	156630000	149370000	74421000	31145000	43275000	77574000	35606000	41968000	84895000	45535000	39360000	69108000	44342000	24766000	54191	2985	51047	327825;327826;327827;327828	441798;441799;441800;441801;441802;441803;441804;441805	441803			8	
VGDQVWLFIDEPR	0	Unmodified	1572.7936	0.79364262	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	91.934	91.524	2	8.9717E-06	80269	160511_QHF_FH_JSI11i_2	124.86	109.29			0.85548	0.96395	25.058	6	1	Median	0.62879	0.53956	NaN	1	1	Median	0.85548	0.99973	6.6442	2	0	Median	0.99852	0.98835	2.0442	2	0	Median	0.68356	0.787	NaN	1	0	Median	534090000	276460000	257640000	108480000	59770000	48710000	109010000	50026000	58984000	183290000	87231000	96055000	133320000	79430000	53886000	54192	1664	51048	327829;327830;327831;327832;327833;327834;327835	441806;441807;441808;441809;441810;441811;441812;441813;441814;441815;441816	441813			11	
VGDSPIPGAGAYADDTAGAAAATGNGDILMR	0	Unmodified	2874.3454	0.3454	1184	P20933	AGA	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;Glycosylasparaginase alpha chain;Glycosylasparaginase beta chain	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		81.763	81.406	3	2.0587E-06	73882	160511_QHF_FH_JSI10i_1	57.629	50.598			1.0577	1.0175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0577	1.0175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29482000	14703000	14779000	0	0	0	0	0	0	29482000	14703000	14779000	0	0	0	54193	1184	51049	327836;327837	441817;441818	441818			2	
VGDSQNPLLSDGDLSTMIGK	1	Unmodified	2045.9939	0.99393493	2148	Q00403	GTF2B	Transcription initiation factor IIB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	86.327	85.832	2;3	4.4492E-21	78133	160511_QHF_FH_JSI12i_1	192.65	153.86			1.1143	1.0197	21.518	8	3	Median	1.463	1.1998	5.9787	3	2	Plateau	0.75192	0.86632	3.3396	2	0	Median	1.1664	1.1324	21.011	2	0	Median	0.65258	0.67692	NaN	1	1	Median	272110000	138980000	133130000	79999000	36631000	43367000	83732000	46304000	37427000	79194000	38346000	40848000	29184000	17699000	11485000	54194	2148	51050	327838;327839;327840;327841;327842;327843;327844;327845	441819;441820;441821;441822;441823;441824;441825;441826;441827;441828;441829;441830;441831	441822			13	
VGDSTPVSEK	1	Unmodified	1017.4979	0.49785453	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		11.831	11.701	2	0.02841	9344	160511_QHF_FH_JSI11i_1	47.706	30.32			0.83919	0.82643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83919	0.82643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	194000000	107080000	86917000	0	0	0	0	0	0	194000000	107080000	86917000	0	0	0	54195	4793	51051	327846	441832	441832			1	
VGDTLLGMATQCVQVK	1	Unmodified	1718.8695	0.86952646	5387	Q9UL18;Q9HCK5	AGO1;AGO4	Protein argonaute-1;Protein argonaute-4	no	no	0	0	0	0	By MS/MS				1	0	1									1				29.472	28.199	2	0.029299	24457	160511_QHF_FH_JSI9i_1	47.559	19.817			0.025714	0.021692	NaN	1	1	Median	0.025714	0.021692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30503000	30261000	242650	30503000	30261000	242650	0	0	0	0	0	0	0	0	0	54196	5387	51052	327847	441833	441833			1	
VGDVQGQESESQLPTK	1	Unmodified	1700.8217	0.82170787	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	30.818	30.418	2	2.9855E-17	26533	160511_QHF_FH_JSI9i_1	127.76	105.56			0.663	0.64299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.663	0.64299	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31656000	26711000	4945500	0	0	0	0	0	0	13116000	8170800	4945500	18540000	18540000	0	54197	4140	51053	327848;327849;327850;327851;327852;327853;327854;327855	441834;441835;441836;441837;441838;441839;441840;441841	441840			8	
VGDVTPQVK	1	Unmodified	941.5182	0.51819605	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	21.837	21.186	2	0.011448	18338	160511_QHF_FH_JSI10i_1	48.794	23.871			1.0029	0.8416	22.425	3	0	Plateau	1.0337	0.8416	NaN	1	0	Median	0.63958	0.74093	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52231	0.54413	NaN	1	0	Median	461070000	231730000	229340000	173080000	69400000	103680000	151660000	87222000	64436000	0	0	0	136330000	75105000	61224000	54198	2409	51054	327856;327857;327858	441842;441843	441842			2	
VGDVVEFRGPSGLLTYTGK	1	Unmodified	1994.0473	0.047291129	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		76.7	76.7	3	0.056946	68476	160511_QHF_FH_JSI11i_3	17.678	9.4907			1.0203	0.9704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0203	0.9704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36954000	16889000	20065000	0	0	0	0	0	0	36954000	16889000	20065000	0	0	0	54199	5309	51055	327859	441844	441844			1	
VGDVYIPR	0	Unmodified	917.49707	0.49706667	2165;4375	Q01130;Q9BRL6	SRSF2;SRSF8	Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	3	2	3	43.336	39.316	2	0.0030778	23046	160513_QHF_FH_JSI11Kac_4	87.754	37.123			1.2145	1.4921	30.452	9	0	Median	2.0474	1.7274	NaN	1	0	Median	1.2145	1.4921	27.519	3	0	Median	1.4671	1.4808	32.822	2	0	Median	1.3916	1.5133	39.029	3	0	Plateau	4135500000	1669600000	2465900000	742650000	237910000	504750000	1272600000	582310000	690330000	1289300000	454200000	835130000	830850000	395150000	435700000	54200	2165;4375	51056	327860;327861;327862;327863;327864;327865;327866;327867;327868	441845;441846;441847;441848;441849;441850;441851;441852	441849			8	
VGDYGSLSGR	0	Unmodified	1009.4829	0.48287317	5250	Q9UBR2	CTSZ	Cathepsin Z	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	23.73	23.097	2	0.005371	19281	160511_QHF_FH_JSI11i_2	54.066	31.574			1.0402	1.2108	30.64	7	0	Median	1.5827	1.3702	NaN	1	0	Median	0.94534	1.1325	10.124	2	0	Median	1.4175	1.4128	21.826	2	0	Median	0.67897	0.7333	3.7634	2	0	Median	2183700000	1104100000	1079500000	285640000	115870000	169760000	622270000	317280000	304990000	694510000	331340000	363170000	581240000	339620000	241610000	54201	5250	51057	327869;327870;327871;327872;327873;327874;327875	441853;441854;441855;441856;441857	441856			5	
VGDYVYFENSSSNPYLIR	0	Unmodified	2122.0007	0.0007348666	4414;2389	Q9BTC8;Q13330	MTA3;MTA1	Metastasis-associated protein MTA3;Metastasis-associated protein MTA1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	79.785	78.982	2	1.0432E-06	69442	160511_QHF_FH_JSI11i_2	132.47	119.27			1.2772	1.2587	32.985	4	1	Median	1.3059	1.1081	NaN	1	1	Median	1.2491	1.4727	NaN	1	0	Median	1.42	1.4299	NaN	1	0	Median	0.69109	0.72195	NaN	1	0	Median	68250000	33821000	34429000	9265200	2714100	6551100	17706000	7621500	10085000	24475000	14395000	10080000	16803000	9089600	7713300	54202	4414;2389	51058	327876;327877;327878;327879	441858;441859;441860;441861;441862;441863;441864;441865;441866	441863			9	
VGDYVYFENSSSNPYLVR	0	Unmodified	2107.9851	0.9850848	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.88	0.331	1	7								1	3	2	2	75.263	74.48	2;3	1.5047E-22	65434	160511_QHF_FH_JSI11i_2	171.29	158.52			0.97988	1.1353	20.191	8	0	Median	1.5523	1.3517	NaN	1	0	Median	0.96913	1.1136	6.8156	3	0	Median	1.2543	1.2554	11.49	2	0	Median	0.74207	0.81611	8.0431	2	0	Median	327960000	156730000	171240000	31721000	13701000	18019000	127010000	68745000	58263000	113120000	46863000	66257000	56113000	27416000	28697000	54203	606	51059	327880;327881;327882;327883;327884;327885;327886;327887	441867;441868;441869;441870;441871;441872;441873;441874;441875;441876;441877;441878;441879;441880	441877			14	
VGEAFHASSTSVLVDGFTDPSNNK	1	Unmodified	2478.1663	0.16629664	4306	Q99717;Q15797	SMAD5;SMAD1	Mothers against decapentaplegic homolog 5;Mothers against decapentaplegic homolog 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	69.204	69.054	3	1.2322E-06	59707	160511_QHF_FH_JSI12i_3	60.272	49.717			2.2238	2.1776	13.373	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5796	2.3936	NaN	1	1	Median	1.9171	1.9811	NaN	1	1	Median	41117000	12875000	28242000	0	0	0	0	0	0	15823000	3035300	12788000	25294000	9839600	15455000	54204	4306	51060	327888;327889;327890	441881;441882;441883	441883			3	
VGEATETALTCLVEK	1	Unmodified	1619.8076	0.80763771	1103	P16615;Q93084	ATP2A2;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	yes	no	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	68.692	68.285	2;3	0.0002605	61985	160511_QHF_FH_JSI11i_1	101.53	77.681			0.72304	0.69735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72304	0.69735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46113000	19795000	26319000	0	0	0	0	0	0	46113000	19795000	26319000	0	0	0	54205	1103	51061	327891;327892	441884;441885	441884			2	
VGEEDDGEYR	0	Unmodified	1167.468	0.46801097	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.917	11.514	2	1.8035E-07	9185	160511_QHF_FH_JSI11i_1	118.18	112.4			1.1324	1.112	9.4955	4	0	Median	1.2472	1.0116	NaN	1	0	Median	0.94835	1.1464	NaN	1	0	Median	1.3055	1.2646	NaN	1	0	Median	1.0281	1.0786	NaN	1	0	Median	1092500000	498540000	593910000	227920000	91204000	136710000	271190000	134440000	136750000	277160000	113940000	163220000	316190000	158950000	157230000	54206	1388	51062	327893;327894;327895;327896	441886;441887;441888;441889;441890;441891;441892;441893	441887			8	
VGEEEHVYSFPNK	1	Unmodified	1533.71	0.70997257	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	2	0		4								1	1		2	36.518	35.345	2;3	0.0014901	30046	160511_QHF_FH_JSI12i_2	73.781	55.917			0.70202	0.83185	82.093	4	2	Median	1.1077	0.96347	NaN	1	0	Median	0.72832	0.90578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.33397	0.36159	105.78	2	2	Median	181970000	95145000	86821000	56713000	26183000	30530000	68387000	36159000	32228000	0	0	0	56866000	32802000	24063000	54207	1640	51063	327897;327898;327899;327900	441894;441895;441896;441897	441895			4	
VGEELDEQGIMLDAFAQEMDHTQSR	0	Unmodified	2848.2644	0.26437248	420	O60499	STX10	Syntaxin-10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	98.039	97.779	3	0.011295	85728	160511_QHF_FH_JSI11i_2	32.083	29.281			1.5121	1.5303	29.319	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2832	1.2437	NaN	1	1	Median	1.7819	1.8828	NaN	1	0	Median	41100000	14330000	26770000	0	0	0	0	0	0	17526000	4627100	12898000	23574000	9702400	13872000	54208	420	51064	327901;327902	441898;441899	441899			2	
VGEFCHNR	0	Unmodified	1017.445	0.44504788	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	2.62	0.484		3	5							1	3	2	2	8.5304	8.2737	2;3	0.0025881	6036	160511_QHF_FH_JSI10i_3	54.611	40.405			0.82932	0.97448	19.985	8	0	Median	1.4384	1.2276	NaN	1	0	Median	0.80388	0.94166	5.2531	3	0	Plateau	0.71388	0.69374	7.2457	2	0	Median	0.97294	1.009	1.1451	2	0	Median	1026500000	508450000	518030000	76655000	24863000	51792000	441820000	224540000	217280000	220970000	122990000	97976000	287040000	136050000	150990000	54209	1208	51065	327903;327904;327905;327906;327907;327908;327909;327910	441900;441901;441902;441903;441904;441905;441906	441902			6	
VGEFFSHVVWK	1	Unmodified	1333.6819	0.68190733	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	3	2	1	71.844	67.688	2;3	5.2944E-05	59198	160511_QHF_FH_JSI12i_3	72.531	64.807			1.0633	1.1396	23.377	9	4	Median	1.7619	1.4296	14.015	3	3	Plateau	0.98737	1.1396	24.665	3	1	Median	1.2294	1.1742	22.712	2	0	Median	0.7132	0.73276	NaN	1	0	Median	743630000	359830000	383800000	182490000	71170000	111320000	163220000	87216000	76001000	190190000	82539000	107650000	207740000	118910000	88830000	54210	4991	51066	327911;327912;327913;327914;327915;327916;327917;327918;327919	441907;441908;441909;441910;441911;441912;441913;441914;441915;441916;441917;441918	441915			12	
VGEFSGANK	1	Unmodified	907.43995	0.43994572	973	P10599	TXN	Thioredoxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.34	4	4	5			2	4	4	3	6	6	7	7	16.349	11.939	2	2.1385E-05	10899	160511_QHF_FH_JSI9i_1	106.36	80.53			0.93039	1.0061	25.324	26	2	Median	1.4464	1.2924	27.285	6	0	Median	0.95947	1.1155	16.344	6	0	Median	1.022	1.0142	25.833	7	2	Median	0.7771	0.81486	7.419	7	0	Median	47869000000	22847000000	25022000000	11176000000	4341700000	6834500000	12037000000	6337500000	5699600000	14423000000	6502300000	7920800000	10233000000	5665500000	4567500000	54211	973	51067	327920;327921;327922;327923;327924;327925;327926;327927;327928;327929;327930;327931;327932;327933;327934;327935;327936;327937;327938;327939;327940;327941;327942;327943;327944;327945	441919;441920;441921;441922;441923;441924;441925;441926;441927;441928;441929;441930;441931;441932;441933;441934;441935;441936;441937;441938;441939;441940;441941;441942;441943;441944;441945;441946;441947;441948;441949;441950;441951;441952;441953;441954;441955;441956;441957;441958	441942			40	
VGEFSGANKEK	2	Acetyl (K)	1206.5881	0.58806652	973	P10599	TXN	Thioredoxin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.748						4	4	2			5	2	3	31.79	22.798	2;3	2.3732E-09	13638	160513_QHF_FH_JSI10Kac_4	128.01	100			0.76078	0.85411	22.207	10	0	Median	NaN	NaN	NaN	0	0	Median	0.79601	0.95895	20.749	5	0	Median	0.66032	0.65236	14.905	2	0	Median	0.78689	0.84835	16.683	3	0	Median	448000000	260130000	187880000	0	0	0	192590000	92146000	100440000	200560000	132740000	67815000	54859000	35239000	19621000	54212	973	51068	327946;327947;327948;327949;327950;327951;327952;327953;327954;327955	441959;441960;441961;441962;441963;441964;441965;441966;441967;441968;441969	441961	743		11	
VGEGPGVCWLAPEQTAGK	1	Unmodified	1854.8934	0.89343302	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	66.417	65.816	2;3	3.2132E-08	59898	160511_QHF_FH_JSI12i_1	125.53	108.59			0.94113	1.0916	25.498	8	1	Plateau	1.9024	1.5538	33.386	2	0	Median	0.94415	1.1109	17.95	2	0	Median	0.93812	0.91492	11.121	2	0	Median	1.0349	1.0916	7.4988	2	1	Median	399080000	197920000	201160000	37722000	16720000	21002000	110060000	50621000	59441000	154180000	81258000	72922000	97119000	49325000	47794000	54213	4715	51069	327956;327957;327958;327959;327960;327961;327962;327963	441970;441971;441972;441973;441974;441975;441976;441977;441978;441979;441980	441974			11	
VGEIFSAAGAAFTK	1	Unmodified	1367.7085	0.70851601	3444	Q8IXM2	BAP18	Chromatin complexes subunit BAP18	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	71.305	71.008	2	0.00012361	61571	160511_QHF_FH_JSI12i_3	73.435	47.497			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54214	3444	51070	327964	441981	441981			1	
VGEIHLLR	0	Unmodified	935.55525	0.55525025	1529	P42226	STAT6	Signal transducer and activator of transcription 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1	3	2	3	1	38.701	37.9	3	0.0011753	31651	160511_QHF_FH_JSI10i_3	60.589	18.48			1.0047	0.95592	7.7645	7	1	Median	1.1925	1.0146	8.4301	2	1	Median	0.8005	0.95082	1.0609	2	0	Median	1.0796	1.0279	11.661	2	0	Median	0.88346	0.90332	NaN	1	0	Median	841170000	470610000	370560000	147520000	67877000	79646000	174510000	98365000	76149000	257960000	129640000	128320000	261170000	174720000	86450000	54215	1529	51071	327965;327966;327967;327968;327969;327970;327971;327972;327973	441982;441983;441984;441985;441986;441987;441988;441989;441990;441991;441992;441993;441994;441995	441985			14	
VGEIVVFR	0	Unmodified	917.53345	0.53345218	2067	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	54.758	53.943	2	0.021583	46647	160511_QHF_FH_JSI11i_2	50.703	31.226			0.84427	0.92066	16.673	5	0	Median	1.2846	1.102	NaN	1	0	Median	0.75959	0.92066	NaN	1	0	Median	1.0097	1.0107	NaN	1	0	Median	0.73468	0.7789	12.252	2	0	Median	709690000	373420000	336270000	109080000	52272000	56809000	197680000	103170000	94505000	243670000	130280000	113390000	159270000	87695000	71572000	54216	2067	51072	327974;327975;327976;327977;327978	441996;441997;441998	441997			3	
VGELKDDDFEK	2	Unmodified	1293.6089	0.60886155	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		29.842	29.468	2	0.002991	24917	160511_QHF_FH_JSI11i_2	71.03	44.588			0.9812	0.98822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9812	0.98822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24857000	11735000	13122000	0	0	0	0	0	0	24857000	11735000	13122000	0	0	0	54217	2191	51073	327979	441999	441999			1	
VGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTR	0	Unmodified	3695.8067	0.80673309	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		100.9	100.8	3	9.5544E-07	91497	160511_QHF_FH_JSI11i_1	58.518	53.612			0.71904	0.71457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71904	0.71457	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26815000	15489000	11326000	0	0	0	0	0	0	26815000	15489000	11326000	0	0	0	54218	512	51074	327980	442000	442000			0	
VGEPVALSEEER	0	Unmodified	1313.6463	0.64630969	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1	0	4									1	1	1	1	36.711	36.104	2	1.0415E-05	32411	160511_QHF_FH_JSI11i_1	118.28	92.719			0.87111	0.92658	14.288	4	0	Median	1.1066	0.90877	NaN	1	0	Median	0.79087	0.95585	NaN	1	0	Median	0.9595	0.94474	NaN	1	0	Median	0.6595	0.70583	NaN	1	0	Median	1067200000	586540000	480690000	108170000	52023000	56151000	289170000	157510000	131660000	398560000	207490000	191080000	271320000	169520000	101800000	54219	2412	51075	327981;327982;327983;327984	442001;442002;442003	442002			3	
VGEPVALSEEERLK	1	Unmodified	1554.8253	0.82533668	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							2	2	4	5	45.124	44.392	2;3	1.8171E-06	37762	160511_QHF_FH_JSI12i_3	94.616	74.854			1.0563	1.1176	24.709	10	1	Median	1.401	1.1989	1.6833	2	0	Median	0.91633	1.1345	NaN	1	0	Median	1.1719	1.2026	36.315	3	1	Median	0.89615	0.93914	9.5204	4	0	Median	2419100000	1028000000	1391000000	317920000	128240000	189680000	328790000	151500000	177290000	812380000	284300000	528080000	959980000	463980000	496000000	54220	2412	51076	327985;327986;327987;327988;327989;327990;327991;327992;327993;327994;327995;327996;327997	442004;442005;442006;442007;442008;442009;442010;442011;442012;442013;442014;442015;442016	442016			13	
VGEQAQVVIIDMNDPSNPIR	0	Unmodified	2194.1052	0.10521671	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	80.564	80.156	2;3	7.4517E-25	72935	160511_QHF_FH_JSI11i_1	215	193.24			0.91916	0.84894	17.374	5	1	Linear	1.5038	1.2183	NaN	1	0	Median	0.88186	1.0536	6.2303	2	1	Median	1.0862	1.054	NaN	1	0	Median	0.74999	0.76583	NaN	1	0	Median	364810000	192170000	172650000	48961000	19779000	29182000	154730000	92057000	62670000	75493000	30729000	44764000	85633000	49602000	36031000	54221	2155	51077	327998;327999;328000;328001;328002	442017;442018;442019;442020;442021;442022;442023;442024	442018			8	
VGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASK	1	Unmodified	3732.8927	0.8927281	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		87.01	86.304	4	3.5084E-07	75867	160511_QHF_FH_JSI9i_2	46.608	42.031			1.1245	1.1336	25.939	4	1	Median	1.4603	1.2265	2.1677	2	0	Median	0.8802	1.0639	NaN	1	1	Median	0.74401	0.70912	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	315740000	155780000	159960000	189900000	75100000	114800000	89157000	61643000	27513000	36687000	19040000	17647000	0	0	0	54222	2155	51078	328003;328004;328005;328006	442025;442026;442027;442028;442029;442030;442031;442032	442032			8	
VGESNNMV	0	Unmodified	848.36982	0.36981725	5592	Q9Y3E0	GOLT1B	Vesicle transport protein GOT1B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.734	21.465	2	0.027281	18565	160511_QHF_FH_JSI10i_1	51.456	41.707			0.56315	0.65937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56315	0.65937	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42199000	26143000	16056000	0	0	0	42199000	26143000	16056000	0	0	0	0	0	0	54223	5592	51079	328007	442033	442033			1	
VGESVFHTTR	0	Unmodified	1131.5673	0.5672715	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	2	3	20.892	20.491	2;3	5.999E-06	16773	160511_QHF_FH_JSI10i_3	97.597	91.635			1.6328	1.6305	33.847	6	1	Linear	NaN	NaN	NaN	0	0	Median	0.91141	1.0548	11.878	2	0	Median	1.2513	1.1566	53.644	2	0	Median	0.80356	0.81492	37.307	2	1	Median	1110200000	481700000	628550000	0	0	0	331970000	173470000	158510000	456400000	184380000	272010000	321870000	123850000	198020000	54224	5180	51080	328008;328009;328010;328011;328012;328013;328014	442034;442035;442036;442037;442038;442039;442040	442035			7	
VGETFHASQPSLTVDGFTDPSNSER	0	Unmodified	2677.2256	0.22560244	2709	Q15796	SMAD2	Mothers against decapentaplegic homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	65.551	64.874	3	1.1331E-13	57686	160511_QHF_FH_JSI11i_3	109.39	101.67			1.1147	1.2274	11.379	7	2	Median	1.5019	1.2872	NaN	1	0	Median	1.0636	1.2949	7.5747	2	2	Median	1.2442	1.2228	7.6307	2	0	Median	0.99351	1.0534	12.241	2	0	Median	579540000	264860000	314680000	49219000	16443000	32777000	169930000	79385000	90540000	188420000	77913000	110510000	171970000	91119000	80855000	54225	2709	51081	328015;328016;328017;328018;328019;328020;328021	442041;442042;442043;442044;442045;442046;442047;442048;442049;442050;442051;442052	442041			12	
VGETIIDLENR	0	Unmodified	1257.6565	0.65648044	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.2	4.92	1	3					1				2	2	1	58.91	55.545	2	5.9698E-06	48205	160511_QHF_FH_JSI11i_2	110.47	84.411			1.3864	1.5565	29.553	4	2	Median	NaN	NaN	NaN	0	0	Median	1.5251	1.8817	27.104	2	2	Median	1.5145	1.5596	NaN	1	0	Median	0.96584	1.1057	NaN	1	0	Median	502460000	193420000	309040000	0	0	0	184650000	60297000	124350000	185620000	71607000	114010000	132200000	61517000	70683000	54226	5161	51082	328022;328023;328024;328025;328026	442053;442054;442055;442056;442057;442058;442059	442057			7	
VGEVCHITCKPEYAYGSAGSPPK	2	Unmodified	2506.1621	0.16207966	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7								2	2	4	39.473	39.001	3;4	3.7443E-39	34194	160511_QHF_FH_JSI11i_3	196.81	186.55			0.80951	0.79931	16.8	6	0	Plateau	NaN	NaN	NaN	0	0	Median	0.917	1.097	5.7456	2	0	Median	0.81248	0.75825	1.6923	2	0	Median	0.87252	0.8865	0.58408	2	0	Median	892810000	456230000	436580000	0	0	0	71336000	30465000	40872000	471890000	219440000	252460000	349580000	206330000	143260000	54227	2193	51083	328027;328028;328029;328030;328031;328032;328033;328034	442060;442061;442062;442063;442064;442065;442066;442067;442068;442069;442070;442071;442072	442062			13	
VGEVIVTK	1	Unmodified	843.50657	0.50656873	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	4.97	4	6	3			3		1		5	5	3	4	27.202	23.933	2	0.002392	21125	160511_QHF_FH_JSI11i_2	80.438	49.209			1.0813	1.0649	73.02	17	3	Median	1.4171	1.1657	68.336	5	1	Median	0.84944	0.98704	98.621	5	1	Median	1.0752	1.059	1.1627	3	0	Median	0.95398	0.99012	87.768	4	1	Median	22479000000	10000000000	12479000000	5137800000	1859200000	3278600000	6167300000	3304800000	2862400000	5933800000	2329200000	3604600000	5240000000	2506800000	2733100000	54228	980	51084	328035;328036;328037;328038;328039;328040;328041;328042;328043;328044;328045;328046;328047;328048;328049;328050;328051	442073;442074;442075;442076;442077;442078;442079;442080;442081;442082;442083;442084;442085;442086;442087;442088;442089;442090;442091;442092;442093;442094;442095;442096;442097;442098	442094			26	
VGEVIVTKDDAMLLK	2	Unmodified	1629.9011	0.90114416	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				64.577	63.644	3	0.018668	56008	160511_QHF_FH_JSI9i_2	38.116	25.56			0.40403	0.343	NaN	1	0	Median	0.40403	0.343	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49477000	26599000	22879000	49477000	26599000	22879000	0	0	0	0	0	0	0	0	0	54229	980	51085	328052	442099	442099			1	
VGEVTYVELLMDAEGK	1	Unmodified	1751.8652	0.86515259	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.87	4	8	1						2	3	4	3	5	100.06	99.242	2;3	1.0574E-81	86561	160511_QHF_FH_JSI12i_2	252.88	230.16			0.8649	0.97452	20.52	13	0	Median	1.2383	1.0525	10.886	2	0	Median	0.78848	0.96187	14.415	4	0	Median	0.99968	1.0413	6.3759	3	0	Plateau	0.82248	1.0702	27.02	4	0	Linear	2666400000	1383800000	1282600000	348520000	156200000	192320000	551880000	327650000	224230000	1110000000	560100000	549910000	655960000	339860000	316110000	54230	1765	51086	328053;328054;328055;328056;328057;328058;328059;328060;328061;328062;328063;328064;328065;328066;328067	442100;442101;442102;442103;442104;442105;442106;442107;442108;442109;442110;442111;442112;442113;442114;442115;442116;442117;442118;442119;442120;442121;442122;442123;442124;442125	442102			26	
VGEVYQQLHAAMSQAPVK	1	Unmodified	1954.9935	0.99348142	3393	Q8IUC4	RHPN2	Rhophilin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.695	64.55	3	0.0024085	55760	160511_QHF_FH_JSI12i_3	49.188	39.439			1.1676	1.1174	27.271	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.503	1.355	NaN	1	1	Median	0.90708	0.92142	NaN	1	1	Median	96822000	47510000	49312000	0	0	0	0	0	0	33651000	13822000	19829000	63171000	33688000	29483000	54231	3393	51087	328068;328069	442126;442127	442127			2	
VGFITYNK	1	Unmodified	940.50182	0.5018177	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	43.167	42.329	2	0.0028402	36018	160511_QHF_FH_JSI12i_3	77.058	49.533			1.124	0.80152	30.69	4	0	Linear	1.8029	1.4752	NaN	1	0	Median	1.087	1.2807	NaN	1	0	Median	1.1623	1.0867	NaN	1	0	Median	0.70295	0.72551	NaN	1	0	Median	629890000	310350000	319540000	42892000	14706000	28186000	54197000	24787000	29410000	216900000	96591000	120310000	315900000	174270000	141630000	54232	614	51088	328070;328071;328072;328073	442128;442129	442129			2	
VGFLPSAGK	1	Unmodified	874.49125	0.49125301	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	44.765	43.853	2	0.00093332	38676	160511_QHF_FH_JSI11i_3	71.379	47.407			0.98365	1.0228	30.535	8	0	Median	1.7945	1.4807	20.739	2	0	Median	0.98365	1.1615	16.296	2	0	Median	0.99228	0.96656	6.3011	2	0	Median	0.66373	0.70891	2.4477	2	0	Median	1242100000	619310000	622750000	165020000	67448000	97572000	213880000	101840000	112040000	403450000	186910000	216550000	459710000	263110000	196600000	54233	1040	51089	328074;328075;328076;328077;328078;328079;328080;328081	442130;442131;442132;442133;442134;442135;442136;442137;442138;442139;442140;442141;442142	442131			13	
VGFQYQGIMQK	1	Unmodified	1297.6489	0.64889264	1676	P49750	YLPM1	YLP motif-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	57.328	57.074	2	0.00010127	49111	160511_QHF_FH_JSI12i_3	93.166	72.219			0.6205	0.63078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6205	0.63078	NaN	1	1	Median	108420000	71886000	36537000	0	0	0	0	0	0	0	0	0	108420000	71886000	36537000	54234	1676	51090	328082;328083	442143;442144	442144			2	
VGFVGISNWALDPAK	1	Unmodified	1572.83	0.83002813	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	93.856	93.364	2	0.00012235	83217	160511_QHF_FH_JSI11i_3	98.156	75.278			0.96979	0.94966	26.904	4	3	Median	1.481	1.2662	NaN	1	1	Median	0.60392	0.69649	NaN	1	1	Median	1.1837	1.0907	NaN	1	0	Median	0.79453	0.82684	NaN	1	1	Median	94546000	47482000	47063000	7692700	2207700	5485000	11039000	7697900	3340700	35249000	16162000	19086000	40566000	21414000	19151000	54235	3009	51091	328084;328085;328086;328087;328088	442145;442146;442147;442148;442149;442150	442146			6	
VGFVTYNK	1	Unmodified	926.48617	0.48616764	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1								2	1	2	35.998	34.929	2	0.0077371	29715	160511_QHF_FH_JSI12i_2	58.604	35.675			1.4983	1.7173	7.7729	3	0	Median	NaN	NaN	NaN	0	0	Median	1.4983	1.7173	NaN	1	0	Median	1.8367	1.8386	NaN	1	0	Median	1.4041	1.5745	NaN	1	0	Median	281000000	117110000	163890000	0	0	0	73076000	29055000	44021000	120970000	40861000	80105000	86954000	47192000	39762000	54236	1814	51092	328089;328090;328091;328092;328093	442151;442152;442153;442154;442155;442156;442157	442151			7	
VGFYVNTFQSIAGLEENFHK	1	Unmodified	2299.1273	0.12733236	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	95.754	91.554	3	3.6315E-100	87638	160511_QHF_FH_JSI12i_3	258.8	224.6			0.93388	0.97169	38.074	8	1	Median	1.9253	1.6193	12.603	2	0	Median	0.79642	0.91708	13.329	2	1	Median	1.0558	1.0128	11.012	2	0	Median	0.60436	0.61654	15.513	2	0	Median	1330700000	706590000	624160000	206680000	80607000	126070000	325420000	170440000	154980000	390220000	205730000	184490000	408430000	249810000	158610000	54237	146	51093	328094;328095;328096;328097;328098;328099;328100;328101	442158;442159;442160;442161;442162;442163;442164;442165;442166;442167;442168	442164			11	
VGGASSLENTVDLHISNSHPLSLTSDQYK	1	Unmodified	3068.5051	0.50507176	2552	Q14653	IRF3	Interferon regulatory factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	74.712	74.287	4	3.9287E-28	64461	160511_QHF_FH_JSI12i_3	140.71	129.06			0.86693	0.80973	20.53	5	2	Median	0.92317	0.80973	NaN	1	0	Median	0.86693	1.0693	NaN	1	0	Median	1.0093	0.95788	NaN	1	0	Median	0.66444	0.67665	0.98732	2	2	Median	476190000	269180000	207010000	32300000	9757000	22543000	66571000	45380000	21191000	165230000	83649000	81577000	212090000	130390000	81696000	54238	2552	51094	328102;328103;328104;328105;328106	442169;442170;442171;442172;442173;442174;442175	442174			7	
VGGGEYIELK	1	Unmodified	1063.555	0.55497548	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	1	2	2	51.263	48.946	2	0.0015414	44983	160511_QHF_FH_JSI12i_1	65.252	43.121			0.73059	0.77431	64.516	6	4	Median	1.0999	0.90789	NaN	1	1	Median	0.61411	0.71164	NaN	1	1	Median	0.45683	0.45363	87.553	2	2	Median	1.039	1.0849	70.703	2	0	Median	451580000	274340000	177240000	120830000	72456000	48377000	101140000	63576000	37565000	180130000	125720000	54414000	49475000	12589000	36886000	54239	3821	51095	328107;328108;328109;328110;328111;328112	442176;442177;442178;442179;442180;442181	442177			6	
VGGGGTAGGDRWEGEDEDEDVK	1	Unmodified	2233.936	0.93596236	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.7	29.33	3	0.00065725	25972	160511_QHF_FH_JSI11i_1	44.415	40.921			0.82861	0.89229	10.213	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.87394	1.0232	NaN	1	0	Median	1.1103	1.0417	NaN	1	0	Median	0.82861	0.86564	NaN	1	0	Median	335920000	167070000	168850000	0	0	0	107180000	47405000	59778000	64109000	33435000	30674000	164630000	86228000	78399000	54240	571	51096	328113;328114;328115	442182;442183;442184;442185	442182			4	
VGGGGVGGGLLENANPLIYQR	0	Unmodified	2040.0752	0.075237214	5584	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		82.881	82.215	2	1.2554E-09	73136	160511_QHF_FH_JSI10i_2	153.38	137.24			0.84702	1.0135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84702	1.0135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7318100	6219700	1098400	0	0	0	7318100	6219700	1098400	0	0	0	0	0	0	54241	5584	51097	328116;328117;328118	442186;442187;442188	442188			3	
VGGHAAEYGAEALER	0	Unmodified	1528.727	0.72701962	49	CON__P01966			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.46		8	7						8	6	5	7	5	33.825	30.116	2;3	3.5979E-40	25664	160511_QHF_FH_JSI11i_2	206.69	57.465		+	1.0309	1.0063	19.959	23	6	Median	1.2163	0.99808	12.065	6	2	Median	0.81879	1.0059	19.351	5	1	Median	1.1234	1.1438	6.2838	7	2	Median	0.90145	0.92687	28.751	5	1	Median	7320700000	3727600000	3593000000	858920000	387100000	471830000	1349300000	763660000	585630000	2886300000	1355300000	1531000000	2226100000	1221600000	1004600000	54242	49	51098	328119;328120;328121;328122;328123;328124;328125;328126;328127;328128;328129;328130;328131;328132;328133;328134;328135;328136;328137;328138;328139;328140;328141	442189;442190;442191;442192;442193;442194;442195;442196;442197;442198;442199;442200;442201;442202;442203;442204;442205;442206;442207;442208;442209;442210;442211;442212;442213;442214;442215;442216;442217;442218;442219;442220;442221;442222	442207			34	
VGGIYTVLQTK	1	Unmodified	1177.6707	0.67067394	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	59.833	59.005	2	0.0005019	50788	160511_QHF_FH_JSI12i_3	70.552	0			1.0278	0.8909	26.69	4	2	Median	1.0786	0.86044	NaN	1	1	Median	1.0966	1.2478	NaN	1	1	Median	0.97934	0.92245	NaN	1	0	Median	0.65044	0.65149	NaN	1	0	Median	847720000	474590000	373130000	147800000	74431000	73366000	168390000	93925000	74465000	198450000	103050000	95401000	333080000	203190000	129900000	54243	1042	51099	328142;328143;328144;328145	442223;442224;442225;442226	442226			4	
VGGLLAFAK	1	Unmodified	874.52764	0.52763852	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	1	2	1	65.535	61.978	2	0.0012211	50862	160511_QHF_FH_JSI9i_3	69.998	42.474			1.0727	1.0944	16.924	6	0	Median	1.4655	1.2226	10.468	2	0	Median	0.89792	1.0549	NaN	1	0	Median	1.0727	1.0425	16.099	2	0	Median	0.82744	0.82136	NaN	1	0	Median	989350000	485380000	503980000	259640000	108700000	150940000	195910000	84331000	111580000	196510000	110040000	86469000	337300000	182300000	154990000	54244	1307	51100	328146;328147;328148;328149;328150;328151	442227;442228;442229;442230;442231;442232;442233	442231			7	
VGGNEVTELSTGSSGHDSSLFEDK	1	Unmodified	2451.1038	0.10375597	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.956	56.611	3	0.00023041	48546	160511_QHF_FH_JSI12i_2	48.867	41.155			3.6075	4.1434	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6075	4.1434	NaN	1	1	Median	54519000	15477000	39042000	0	0	0	0	0	0	0	0	0	54519000	15477000	39042000	54245	4903	51101	328152	442234	442234			1	
VGGNIEVLGFNAR	0	Unmodified	1344.715	0.71499837	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	66.497	65.694	2	3.1563E-06	56751	160511_QHF_FH_JSI12i_3	126.67	108.36			1.0052	1.0284	13.079	6	1	Median	1.2121	1.0373	NaN	1	0	Median	0.80722	0.96207	8.2139	2	0	Median	1.3098	1.2406	NaN	1	0	Median	1.0052	1.0545	18.844	2	1	Median	750440000	374080000	376360000	113970000	49258000	64712000	148510000	86093000	62413000	202380000	85308000	117070000	285590000	153420000	132170000	54246	2578	51102	328153;328154;328155;328156;328157;328158	442235;442236;442237;442238;442239;442240;442241;442242;442243	442243			9	
VGGNIEVLGFNTR	0	Unmodified	1374.7256	0.72556306	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	66.234	65.839	2	0.00078969	56957	160511_QHF_FH_JSI12i_3	79.82	62.384			1.04	1.1055	10.16	5	2	Median	NaN	NaN	NaN	0	0	Median	0.91504	1.1055	NaN	1	0	Median	1.1598	1.1389	18.142	2	0	Median	1.076	1.1075	8.5992	2	2	Median	271330000	123550000	147780000	0	0	0	49256000	22761000	26495000	109080000	47885000	61196000	112990000	52904000	60086000	54247	2318	51103	328159;328160;328161;328162;328163	442244;442245;442246;442247;442248;442249	442249			6	
VGGRLEDTK	1	Unmodified	973.51926	0.51925868	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							4	3	3	2	8.191	7.8214	2;3	0.0011025	5485	160511_QHF_FH_JSI11i_3	88.37	50.236			1.0358	1.025	28.954	12	0	Median	1.7199	1.4129	10.15	4	0	Median	0.8024	0.94242	5.7698	3	0	Median	1.1154	1.0532	3.7798	3	0	Plateau	0.59899	0.63226	4.4068	2	0	Median	8472900000	3880000000	4592900000	2319200000	826160000	1493100000	2921300000	1487300000	1434000000	2898800000	1356700000	1542100000	333480000	209830000	123650000	54248	1630	51104	328164;328165;328166;328167;328168;328169;328170;328171;328172;328173;328174;328175	442250;442251;442252;442253;442254;442255;442256;442257;442258;442259;442260;442261;442262;442263;442264;442265	442250			16	
VGGSGVNVNAK	1	Unmodified	1000.5302	0.53015772	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	13.731	13.248	2	0.0049583	10764	160511_QHF_FH_JSI9i_2	53.968	25.794			1.1447	1.0976	23.706	5	0	Median	1.4418	1.2131	39.649	2	0	Median	0.74237	0.91083	NaN	1	0	Median	1.1447	1.0976	NaN	1	0	Median	1.1846	1.25	NaN	1	0	Median	1145000000	518600000	626450000	338000000	115630000	222370000	280380000	156460000	123920000	309400000	151020000	158370000	217270000	95489000	121780000	54249	2286	51105	328176;328177;328178;328179;328180	442266;442267;442268;442269	442269			4	
VGGSSVDLHR	0	Unmodified	1025.5254	0.52540669	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.23		3	5						1	2	2	3	2	14.262	13.205	2;3	0.00032357	10662	160511_QHF_FH_JSI11i_3	56.359	45.602			1.0838	1.0916	17.43	9	1	Median	1.5479	1.2954	14.803	2	0	Median	0.86458	1.0455	29.476	2	0	Median	1.1575	1.0916	6.9347	3	0	Median	0.92648	0.95837	16.848	2	1	Median	1126700000	558790000	567940000	102760000	41067000	61694000	175850000	96472000	79374000	415630000	185000000	230630000	432490000	236250000	196240000	54250	442	51106	328181;328182;328183;328184;328185;328186;328187;328188;328189	442270;442271;442272;442273;442274;442275;442276;442277;442278;442279	442270			10	
VGGTKPAGGDFGEVLNSAANASATTTEPLPEK	2	Unmodified	3085.5204	0.52038748	1858	P55327	TPD52	Tumor protein D52	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.58	0.493		5	7							3	5	2	2	73.458	72.722	3;4	4.0482E-28	65060	160511_QHF_FH_JSI11i_3	122.11	111.19			0.94339	0.95237	24.87	11	1	Median	1.3416	1.2118	11.223	3	1	Plateau	0.79996	0.96438	7.4455	4	0	Median	0.9857	0.92984	2.7413	2	0	Median	0.64352	0.6484	20.805	2	0	Median	938200000	523170000	415030000	126660000	50905000	75755000	272670000	160360000	112310000	412830000	244500000	168320000	126040000	67402000	58636000	54251	1858	51107	328190;328191;328192;328193;328194;328195;328196;328197;328198;328199;328200;328201	442280;442281;442282;442283;442284;442285;442286;442287;442288;442289;442290;442291;442292;442293;442294;442295;442296;442297;442298;442299;442300;442301	442283			22	
VGGTNPNGGSFEEVLSSTAHASAQSLAGGSR	0	Unmodified	2944.3911	0.39110464	2779	Q16890	TPD52L1	Tumor protein D53	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		78.617	78.617	3	8.0775E-13	70181	160511_QHF_FH_JSI11i_3	75.275	72.962			0.8904	0.85333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8904	0.85333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55393000	25863000	29529000	0	0	0	0	0	0	55393000	25863000	29529000	0	0	0	54252	2779	51108	328202	442302;442303	442303			2	
VGGTSDVEVNEK	1	Unmodified	1232.5885	0.58846046	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.24	5.07	4	4	4		1	3	1			4	5	3	5	19.779	16.567	2	6.5389E-19	5504	160513_QHF_FH_JSI9Kac_3	173.71	144.24			0.88552	0.97436	15.957	17	0	Median	1.1825	0.97832	18.77	4	0	Median	0.86198	1.0215	9.7066	5	0	Median	1.0805	1.002	13.391	3	0	Median	0.7972	0.85562	11.793	5	0	Median	27345000000	13369000000	13976000000	6605600000	2789100000	3816500000	7225900000	3946700000	3279200000	7220900000	3775700000	3445200000	6292500000	2857400000	3435100000	54253	980	51109	328203;328204;328205;328206;328207;328208;328209;328210;328211;328212;328213;328214;328215;328216;328217;328218;328219	442304;442305;442306;442307;442308;442309;442310;442311;442312;442313;442314;442315;442316;442317;442318;442319;442320;442321;442322;442323;442324;442325;442326;442327;442328;442329;442330	442319			27	
VGGTSDVEVNEKK	2	Unmodified	1360.6834	0.68342347	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	4.38	8	8	3				2	1		6	4	5	7	14.678	12.955	2;3	2.6958E-05	10643	160511_QHF_FH_JSI9i_1	75.669	56.537			1.1127	0.97309	29.286	21	7	Median	1.1961	1.0259	16.479	5	2	Median	0.67722	0.81263	7.5895	4	0	Median	1.1161	1.1264	31.993	5	1	Median	0.89821	0.97758	38.844	7	4	Median	2948200000	1599700000	1348500000	620310000	324990000	295310000	658730000	376270000	282460000	721190000	374430000	346760000	948020000	524010000	424010000	54254	980	51110	328220;328221;328222;328223;328224;328225;328226;328227;328228;328229;328230;328231;328232;328233;328234;328235;328236;328237;328238;328239;328240;328241	442331;442332;442333;442334;442335;442336;442337;442338;442339;442340;442341;442342;442343;442344;442345;442346;442347;442348;442349;442350;442351;442352;442353;442354	442346			23	
VGGTSDVEVNEKK	2	Acetyl (K)	1402.694	0.69398816	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		32.541	23.912	2	0.00064397	14353	160513_QHF_FH_JSI11Kac_3	90.685	76.012			0.55697	0.59724	77.289	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87999	1.0316	NaN	1	0	Median	0.35252	0.34578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11415000	8098800	3316500	0	0	0	2430300	1596400	833950	8984900	6502400	2482500	0	0	0	54255	980	51110	328242;328243	442355;442356	442356	761		2	
VGGVQSLGGTGALR	0	Unmodified	1270.6993	0.69934831	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0		By matching		By MS/MS	3	0			2								1		1	42.356	41.484	2	0.013882	35388	160511_QHF_FH_JSI12i_3	44.543	33.713			0.76558	0.82835	33.997	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94062	1.0535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62312	0.65134	NaN	1	0	Median	59926000	35781000	24145000	0	0	0	21933000	11430000	10504000	0	0	0	37993000	24352000	13641000	54256	1111	51111	328244;328245	442357	442357			1	
VGGYILGEFGNLIAGDPR	0	Unmodified	1846.9577	0.95774784	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			4							1	2	1		101.49	101.37	2;3	5.043E-66	83977	160511_QHF_FH_JSI10i_3	227.42	189.74			1.0077	1.0509	21.541	4	0	Median	1.9377	1.5993	NaN	1	0	Median	0.90414	1.0347	2.0334	2	0	Median	1.0931	1.0521	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	579550000	254390000	325160000	70857000	24971000	45885000	268060000	136820000	131240000	240630000	92604000	148030000	0	0	0	54257	726;635	51112	328246;328247;328248;328249	442358;442359;442360	442358			3	
VGHFDPVTR	0	Unmodified	1026.5247	0.52467841	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	2	1	22.433	21.691	2;3	0.0013341	18246	160511_QHF_FH_JSI11i_3	55.461	39.799			1.0607	1.2615	33.298	8	1	Median	2.0594	1.6723	10.033	2	0	Median	1.0156	1.187	7.5768	3	1	Plateau	0.96571	0.92701	0.30194	2	0	Median	0.62458	0.64186	NaN	1	0	Median	1590300000	806490000	783790000	197480000	70355000	127120000	484080000	249990000	234090000	727590000	376470000	351120000	181130000	109680000	71447000	54258	5434	51113	328250;328251;328252;328253;328254;328255;328256;328257	442361;442362;442363;442364;442365;442366;442367;442368;442369;442370;442371;442372;442373	442364			13	
VGHLSEPLMNR	0	Unmodified	1251.6394	0.63939059	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			33.233	31.826	2;3	0.0019155	25914	160511_QHF_FH_JSI9i_3	50.13	43.809			1.2259	1.2622	49.085	3	0	Median	1.539	1.2622	NaN	1	0	Median	0.75607	0.88071	62.892	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	224510000	104580000	119930000	116750000	40816000	75930000	107770000	63763000	44004000	0	0	0	0	0	0	54259	3955	51114	328258;328259;328260	442374;442375;442376;442377	442376			4	
VGHSELVGEIIR	0	Unmodified	1307.7197	0.7197494	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.38	4.41		2	5						1	2	2	2	2	49.149	47.494	2;3	2.42E-07	40537	160511_QHF_FH_JSI12i_3	130.98	115.37			0.76145	0.80833	14.221	8	3	Median	0.9819	0.84047	27.658	2	2	Median	0.71202	0.83047	7.3935	2	1	Median	0.88182	0.85361	4.1363	2	0	Median	0.67492	0.69291	2.3394	2	0	Median	1791300000	974190000	817070000	114210000	54680000	59527000	160480000	93260000	67222000	721210000	364420000	356780000	795370000	461830000	333540000	54260	1479	51115	328261;328262;328263;328264;328265;328266;328267;328268	442378;442379;442380;442381;442382;442383;442384;442385;442386;442387;442388;442389	442389			12	
VGHSTAHDEIIPMSIR	0	Unmodified	1761.8832	0.88320269	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		43.942	43.942	4	0.051262	38711	160511_QHF_FH_JSI11i_3	24.793	15.388			1.0024	0.91445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0024	0.91445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51745000	30813000	20932000	0	0	0	0	0	0	51745000	30813000	20932000	0	0	0	54261	2508	51116	328269	442390	442390			0	
VGHVGPLQIGQAVK	1	Unmodified	1401.8092	0.80923311	2345	Q13049	TRIM32	E3 ubiquitin-protein ligase TRIM32	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			47.816	46.228	3	3.8822E-05	37822	160511_QHF_FH_JSI9i_3	95.094	89.592			0.91053	0.89306	18.678	2	0	Median	1.2263	1.0192	NaN	1	0	Median	0.67609	0.78257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141330000	73674000	67656000	72026000	29876000	42149000	69304000	43797000	25506000	0	0	0	0	0	0	54262	2345	51117	328270;328271	442391;442392;442393;442394	442394			4	
VGHVTER	0	Unmodified	796.41915	0.4191507	2538	Q14498	RBM39	RNA-binding protein 39	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		4.3673	4.0418	2	0.048713	1800	160511_QHF_FH_JSI11i_3	43.124	6.0297			1.4593	1.3417	22.364	3	0	Median	1.768	1.4116	NaN	1	0	Median	0.83373	0.93657	NaN	1	0	Median	1.4593	1.3417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	665350000	312690000	352660000	159320000	56336000	102980000	436610000	223020000	213600000	69419000	33338000	36081000	0	0	0	54263	2538	51118	328272;328273;328274	442395	442395			1	
VGIALKPFLPQLQTTFTK	2	Unmodified	2001.1663	0.16628405	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	100.41	100.32	3	6.0999E-06	89168	160511_QHF_FH_JSI11i_3	93.152	77.998			0.96564	1.0152	20.992	4	0	Median	1.4606	1.1803	NaN	1	0	Median	0.85466	1.0033	NaN	1	0	Median	1.091	1.0274	NaN	1	0	Median	0.70519	0.71946	NaN	1	0	Median	587160000	277410000	309740000	189600000	64644000	124960000	211230000	118080000	93147000	122750000	59327000	63424000	63580000	35364000	28215000	54264	3860	51119	328275;328276;328277;328278	442396;442397;442398;442399;442400;442401	442396			6	
VGIDTPDIDIHGPEGK	1	Unmodified	1661.8261	0.82606496	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	60.135	59.49	2;3	4.4461E-11	51644	160511_QHF_FH_JSI11i_2	105.17	89.905			0.7776	0.78481	11.887	4	0	Median	0.99128	0.82292	NaN	1	0	Median	0.79166	0.91687	NaN	1	0	Median	0.76379	0.74847	NaN	1	0	Median	0.68981	0.69709	NaN	1	0	Median	519150000	278830000	240320000	76871000	31262000	45609000	200070000	113980000	86086000	127460000	70466000	56998000	114750000	63124000	51628000	54265	2286	51120	328279;328280;328281;328282;328283	442402;442403;442404;442405;442406;442407;442408;442409;442410;442411;442412	442412			11	
VGIEAAEMLLANLR	0	Unmodified	1498.8177	0.81774889	134	O00442	RTCA	RNA 3'-terminal phosphate cyclase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		2	0		3								1	1	1		101.86	101.77	2	0.00028363	90347	160511_QHF_FH_JSI10i_2	102.4	86.147			1.2512	1.0553	24.136	3	0	Median	1.2512	1.0553	NaN	1	0	Median	1.2658	1.5548	NaN	1	0	Median	0.99226	0.9983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299820000	132880000	166950000	67313000	28203000	39110000	114270000	45517000	68753000	118240000	59156000	59086000	0	0	0	54266	134	51121	328284;328285;328286	442413	442413			1	
VGIFPISYVEK	1	Unmodified	1250.6911	0.69107503	616	O94875	SORBS2	Sorbin and SH3 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		84.8	84.406	2	0.0081393	74494	160511_QHF_FH_JSI9i_2	50.108	38.26			1.0663	1.027	11.479	3	1	Median	1.4157	1.2386	NaN	1	0	Median	0.84995	1.027	NaN	1	0	Median	1.0663	1.0055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56333000	28136000	28197000	18674000	6970100	11704000	20540000	12834000	7705900	17118000	8331500	8786700	0	0	0	54267	616	51122	328287;328288;328289	442414;442415;442416;442417;442418;442419	442417			6	
VGIFQSFQK	1	Unmodified	1052.5655	0.56548059	5005	Q9NUL7	DDX28	Probable ATP-dependent RNA helicase DDX28	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	59.663	58.836	2	0.0002013	50440	160511_QHF_FH_JSI12i_3	85.161	65.457			0.85246	0.87606	22.704	4	0	Median	1.3642	1.1242	NaN	1	0	Median	0.82018	0.92253	NaN	1	0	Median	0.88601	0.83194	NaN	1	0	Median	0.6474	0.65158	NaN	1	0	Median	366260000	194460000	171800000	98872000	45788000	53084000	106470000	63551000	42923000	66252000	33064000	33188000	94666000	52058000	42607000	54268	5005	51123	328290;328291;328292;328293	442420;442421;442422;442423;442424	442424			5	
VGIFTGAR	0	Unmodified	819.46029	0.46028724	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS			By matching	3	0			2							1			1	35.188	34.405	2	0.057531	27970	160511_QHF_FH_JSI9i_3	35.618	8.8222			0.93549	0.8448	45.043	2	0	Median	1.4289	1.1617	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.61244	0.61437	NaN	1	0	Median	427060000	201920000	225140000	364840000	158570000	206270000	0	0	0	0	0	0	62215000	43353000	18863000	54269	897	51124	328294;328295	442425	442425			1	
VGIGAFPTEQDNEIGELLQTR	0	Unmodified	2286.1492	0.14919002	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.68	3	8	4							1	4	5	5	100.53	100.46	2;3	1.4278E-43	88164	160511_QHF_FH_JSI11i_2	202.13	180.09			0.96648	1.0079	33.35	13	7	Median	1.3984	1.2272	NaN	1	1	Median	0.72405	0.86215	7.8375	3	2	Median	1.035	1.0596	26.332	4	4	Linear	0.80489	0.90784	31.813	5	0	Median	561760000	278640000	283120000	36843000	14093000	22751000	109570000	64436000	45137000	166940000	58863000	108080000	248400000	141240000	107160000	54270	1356	51125	328296;328297;328298;328299;328300;328301;328302;328303;328304;328305;328306;328307;328308;328309;328310	442426;442427;442428;442429;442430;442431;442432;442433;442434;442435;442436;442437;442438;442439;442440;442441;442442;442443;442444	442438			18	
VGIGPGSVCTTR	0	Unmodified	1202.6078	0.60775611	5224	Q9P2T1	GMPR2	GMP reductase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	33.464	33.464	2	0.0063429	28248	160511_QHF_FH_JSI12i_3	52.79	31.888			1.1641	1.1093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1641	1.1093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30740000	13159000	17581000	0	0	0	0	0	0	30740000	13159000	17581000	0	0	0	54271	5224	51126	328311;328312;328313	442445;442446;442447	442447			3	
VGIIAWHPTAR	0	Unmodified	1219.6826	0.68257603	4366	Q9BR76	CORO1B	Coronin-1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			58.637	49.847	3	0.010079	27370	160513_QHF_FH_JSI10Kac_6	28.283	19.329			1.3912	1.3977	70.204	2	1	Median	2.675	2.2962	NaN	1	1	Median	0.72354	0.85079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61891000	33167000	28723000	12617000	3543700	9073300	49274000	29624000	19650000	0	0	0	0	0	0	54272	4366	51127	328314;328315	442448;442449	442449			2	
VGILAIQLK	1	Unmodified	953.62735	0.62735256	3256	Q7Z392	TRAPPC11	Trafficking protein particle complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	75.068	74.279	2	0.0033385	66175	160511_QHF_FH_JSI11i_3	60.76	39.46			1.1388	0.87167	18.266	4	0	Linear	1.4636	1.2397	NaN	1	0	Median	1.057	1.2018	NaN	1	0	Median	1.2269	1.1604	NaN	1	0	Median	0.80539	0.83628	NaN	1	0	Median	87615000	45519000	42096000	11674000	4820500	6853700	13651000	8120500	5530100	23614000	12834000	10780000	38676000	19744000	18932000	54273	3256	51128	328316;328317;328318;328319	442450;442451;442452;442453;442454	442450			5	
VGILLDEASGVNK	1	Unmodified	1313.7191	0.7190807	2175	Q01780	EXOSC10	Exosome component 10	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			59.867	58.99	2	0.0024601	52165	160511_QHF_FH_JSI10i_2	67.153	55.94			0.9153	1.1142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.9153	1.1142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35930000	18242000	17689000	0	0	0	35930000	18242000	17689000	0	0	0	0	0	0	54274	2175	51129	328320	442455	442455			1	
VGILTLSDYVLELGHPYLWVQK	1	Unmodified	2542.3835	0.38354705	2469	Q13769	THOC5	THO complex subunit 5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	1	2	98.157	89.443	3	3.9447E-89	50887	160513_QHF_FH_JSI11Kac_6	217.62	173.51			1.2311	1.1515	23.514	5	3	Median	1.2937	1.1261	7.082	2	2	Median	0.97646	1.1515	NaN	1	0	Median	1.6933	1.617	NaN	1	0	Median	0.7988	0.83934	NaN	1	1	Median	1328500000	702950000	625600000	520350000	239700000	280660000	360420000	185530000	174880000	127830000	59683000	68146000	319950000	218040000	101910000	54275	2469	51130	328321;328322;328323;328324;328325;328326	442456;442457;442458;442459;442460;442461	442456			6	
VGINYQPPTVVPGGDLAK	1	Unmodified	1823.9781	0.97814893	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.71	8	8	8			3	3	5		8	8	10	9	75.013	71.525	2;3	7.6895E-42	66206	160511_QHF_FH_JSI12i_1	210.41	186.11			0.9201	1.0504	19.245	34	4	Median	1.4273	1.2141	9.1481	8	1	Median	0.88311	1.0539	3.4555	8	1	Median	1.0381	1.0271	12.929	10	1	Median	0.7144	0.76275	8.9472	8	1	Median	39981000000	18317000000	21663000000	10222000000	3737700000	6484500000	11815000000	5938000000	5876900000	9584100000	4105800000	5478200000	8359400000	4535700000	3823700000	54276	2073;2074;4359	51131	328327;328328;328329;328330;328331;328332;328333;328334;328335;328336;328337;328338;328339;328340;328341;328342;328343;328344;328345;328346;328347;328348;328349;328350;328351;328352;328353;328354;328355;328356;328357;328358;328359;328360;328361	442462;442463;442464;442465;442466;442467;442468;442469;442470;442471;442472;442473;442474;442475;442476;442477;442478;442479;442480;442481;442482;442483;442484;442485;442486;442487;442488;442489;442490;442491;442492;442493;442494;442495;442496;442497;442498;442499;442500;442501;442502;442503;442504;442505;442506;442507;442508;442509;442510;442511;442512;442513;442514;442515;442516;442517;442518;442519;442520;442521;442522;442523;442524;442525;442526;442527;442528;442529;442530;442531;442532;442533;442534;442535;442536;442537;442538;442539;442540;442541;442542;442543;442544;442545;442546;442547;442548;442549;442550;442551;442552;442553;442554;442555;442556;442557;442558;442559;442560;442561;442562;442563;442564;442565;442566;442567;442568;442569;442570;442571;442572;442573;442574;442575;442576;442577;442578;442579;442580;442581;442582	442493			121	
VGINYQPPTVVPGGDLAKVQR	1	Acetyl (K)	2249.2168	0.21681607	2073;4359;2074	P68363;P68366;Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	1	0	0	1			By MS/MS		15	0								1				1		81.841	71.29	3	0.052379	37772	160513_QHF_FH_JSI11Kac_5	35.703	21.831			0.094972	0.092995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.094972	0.092995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3262100	3017100	244930	0	0	0	0	0	0	3262100	3017100	244930	0	0	0	54277	2073;2074;4359	51132	328362	442583	442583			1	
VGIPQENADHDDFDANQLLNK	1	Unmodified	2352.0982	0.09821708	2137	P98082	DAB2	Disabled homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	67.455	66.842	3	4.2351E-13	60778	160511_QHF_FH_JSI11i_1	116.98	108.58			0.79438	0.9868	16.617	5	0	Median	1.4096	1.2387	NaN	1	0	Median	0.79233	0.9438	6.301	2	0	Median	1.017	1.0099	NaN	1	0	Median	0.75075	0.78708	NaN	1	0	Median	409570000	214500000	195070000	17051000	8554100	8496500	143160000	80345000	62820000	102920000	49084000	53831000	146440000	76520000	69919000	54278	2137	51133	328363;328364;328365;328366;328367	442584;442585;442586;442587;442588;442589;442590;442591;442592;442593	442584			10	
VGIPVTDENGNR	0	Unmodified	1269.6313	0.63132832	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	2	1	2	33.501	32.767	2	1.4627E-05	29353	160511_QHF_FH_JSI11i_1	114.5	97.825			0.98042	1.0618	26.042	6	0	Median	1.6749	1.4054	18.168	2	0	Median	0.80547	0.9769	8.4746	2	0	Median	1.1293	1.087	NaN	1	0	Median	0.69573	0.74261	NaN	1	0	Median	2208500000	1097200000	1111300000	548960000	214660000	334300000	700840000	390780000	310070000	607900000	285220000	322680000	350780000	206520000	144260000	54279	4806	51134	328368;328369;328370;328371;328372;328373;328374	442594;442595;442596;442597;442598;442599;442600;442601;442602;442603;442604;442605	442595			12	
VGIPVTDENGNRLGESANAAK	1	Unmodified	2111.0607	0.060709362	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							2	2	2	2	44.918	44.266	3	3.717E-07	38831	160511_QHF_FH_JSI10i_2	84.499	75.402			1.059	1.2708	25.114	7	1	Median	1.6654	1.4077	NaN	1	0	Median	0.90052	1.0747	23.703	2	0	Median	1.4003	1.3971	3.474	2	1	Median	0.79828	0.83964	4.025	2	0	Median	572170000	276050000	296110000	71766000	25483000	46283000	147270000	78220000	69047000	146890000	62550000	84336000	206250000	109800000	96448000	54280	4806	51135	328375;328376;328377;328378;328379;328380;328381;328382	442606;442607;442608;442609;442610;442611;442612;442613;442614;442615;442616;442617;442618;442619;442620	442616			15	
VGIQQGLLSQSTR	0	Unmodified	1385.7627	0.76267685	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.663	1	4	5							2	2	3	3	49.14	48.34	2	6.6128E-05	41259	160511_QHF_FH_JSI12i_3	104.82	87.388			0.90057	0.96712	39.294	10	3	Median	1.6833	1.3931	0.82229	2	0	Median	0.84199	0.98377	2.4345	2	0	Median	1.0429	0.96726	5.4497	3	2	Median	0.62273	0.48376	34.609	3	1	Plateau	559840000	283700000	276150000	152630000	57527000	95105000	185890000	99813000	86078000	119870000	56204000	63663000	101450000	70150000	31301000	54281	4538	51136	328383;328384;328385;328386;328387;328388;328389;328390;328391;328392	442621;442622;442623;442624;442625;442626;442627;442628;442629;442630;442631;442632;442633;442634;442635;442636	442636			16	
VGISPDK	1	Unmodified	714.3912	0.39120462	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.326	14.085	2	0.013602	11683	160511_QHF_FH_JSI10i_1	58.604	21.511			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54282	1519	51137	328393	442637	442637			1	
VGISQENKK	2	Unmodified	1001.5506	0.55055881	4610	Q9GZU8	FAM192A	Protein FAM192A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	2	2	7.1817	7.0522	2;3	0.00036033	4831	160511_QHF_FH_JSI11i_3	82.279	37.93			0.74636	0.58535	17.466	6	0	Linear	NaN	NaN	NaN	0	0	Median	0.72675	0.86541	0.16952	2	0	Median	0.92245	0.85872	1.4824	2	0	Median	0.6385	0.6461	20.339	2	0	Median	883650000	497260000	386390000	0	0	0	183780000	102860000	80927000	273850000	146430000	127420000	426020000	247970000	178040000	54283	4610	51138	328394;328395;328396;328397;328398;328399	442638;442639;442640;442641;442642;442643;442644;442645;442646	442639			9	
VGITLFTVSHR	0	Unmodified	1228.6928	0.69280637	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	69.4	60.478	2;3	9.399E-37	32113	160513_QHF_FH_JSI9Kac_6	172.8	107.46			0.95545	1.0445	20.296	8	0	Median	1.3258	1.1375	5.9737	2	0	Median	0.87392	1.0445	3.2144	2	0	Median	1.0499	1.0253	6.3296	2	0	Median	0.65443	0.70093	3.7843	2	0	Median	1431900000	737550000	694370000	233500000	95336000	138170000	758680000	417950000	340720000	320710000	152270000	168440000	119020000	71987000	47034000	54284	1304	51139	328400;328401;328402;328403;328404;328405;328406;328407	442647;442648;442649;442650;442651;442652;442653;442654;442655;442656;442657;442658;442659;442660;442661	442652			15	
VGITLFTVSHRK	1	Unmodified	1356.7878	0.78776939	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	3	1	1	56.951	47.89	3;4	0.00013108	26101	160513_QHF_FH_JSI10Kac_6	79.82	76.692			0.95727	1.0006	29.775	6	0	Median	1.3539	1.1803	NaN	1	0	Median	1.0317	1.227	37.288	3	0	Plateau	0.8896	0.85256	NaN	1	0	Median	0.655	0.68201	NaN	1	0	Median	330930000	153280000	177650000	66386000	28354000	38033000	233420000	109560000	123860000	10686000	4832800	5853500	20435000	10529000	9905900	54285	1304	51140	328408;328409;328410;328411;328412;328413	442662;442663;442664;442665;442666;442667;442668	442668			7	
VGIVAWHPTAR	0	Unmodified	1205.6669	0.66692597	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		58.153	48.43	3	0.057361	26213	160513_QHF_FH_JSI11Kac_6	20.463	9.9392			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54286	5411	51141	328414	442669	442669			1	
VGIVGKYGTR	1	Acetyl (K)	1090.6135	0.61349341	1956	P61513	RPL37A	60S ribosomal protein L37a	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	1	2	1	1	47.921	38.445	2	0.020136	21295	160513_QHF_FH_JSI10Kac_6	51.268	21.794			0.8829	0.7258	56.253	5	0	Median	0.8829	0.7258	NaN	1	0	Median	0.90188	1.0818	0.72774	2	0	Median	0.32682	0.30124	NaN	1	0	Median	0.40846	0.44527	NaN	1	0	Median	112430000	76205000	36226000	6619400	3873100	2746300	28780000	15435000	13345000	60590000	44804000	15786000	16442000	12093000	4348900	54287	1956	51142	328415;328416;328417;328418;328419	442670;442671;442672	442672	1972		3	
VGIVGNLSSGK	1	Unmodified	1029.5819	0.58185894	4190	Q96P47	AGAP3	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	38.756	37.965	2	0.0044874	32271	160511_QHF_FH_JSI12i_3	54.539	36.631			1.0279	1.1014	32.557	4	0	Median	2.2448	1.872	NaN	1	0	Median	1.0727	1.2243	NaN	1	0	Median	0.958	0.89931	NaN	1	0	Median	0.98495	0.99079	NaN	1	0	Median	145720000	76156000	69566000	19450000	5477000	13973000	23606000	13194000	10412000	46230000	23751000	22479000	56437000	33734000	22703000	54288	4190	51143	328420;328421;328422;328423	442673;442674	442674			2	
VGIYSPHTAYDAAPQGVNNWLAK	1	Unmodified	2471.2234	0.22335801	4608	Q9GZT8	NIF3L1	NIF3-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	3	2	1	75.285	74.522	3	1.2088E-38	64607	160511_QHF_FH_JSI12i_3	193.54	189.1			0.95801	1.0979	28.27	7	2	Median	1.7754	1.479	14.313	2	1	Median	0.95294	1.1418	5.542	2	1	Median	0.99448	0.9703	9.4642	2	0	Median	0.66048	0.67523	NaN	1	0	Median	857820000	464030000	393790000	88843000	40251000	48592000	216650000	106240000	110410000	293790000	163490000	130300000	258530000	154050000	104490000	54289	4608	51144	328424;328425;328426;328427;328428;328429;328430;328431	442675;442676;442677;442678;442679;442680;442681;442682;442683;442684;442685;442686;442687;442688;442689;442690;442691;442692;442693	442692			19	
VGKDELFALEQSCAQVVLQAANER	1	Unmodified	2674.3385	0.33846413	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	4	1	97.767	97.674	3	2.9747E-24	86796	160511_QHF_FH_JSI11i_3	151.06	144.11			0.85015	0.98395	14.687	7	2	Median	1.1842	1.014	NaN	1	0	Median	0.85015	1.0327	NaN	1	0	Median	0.8497	0.88854	16.947	4	2	Median	0.84407	0.976	NaN	1	0	Median	422090000	226870000	195220000	37872000	18880000	18992000	49122000	27249000	21873000	262960000	136190000	126770000	72140000	44560000	27581000	54290	2751	51145	328432;328433;328434;328435;328436;328437;328438;328439	442694;442695;442696;442697;442698;442699;442700;442701;442702;442703;442704;442705;442706;442707;442708;442709;442710	442695			17	
VGKFPFAANSR	1	Acetyl (K)	1234.6459	0.64585618	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	3	2	2	66.776	56.756	2	0.00019453	29600	160513_QHF_FH_JSI12Kac_6	90.827	66.872			0.944	1.0693	28.451	9	0	Median	1.4035	1.2088	5.0352	2	0	Median	0.80281	0.94399	9.187	3	0	Plateau	1.4149	1.3825	59.712	2	0	Median	0.79616	0.8498	8.6797	2	0	Median	634990000	334720000	300270000	89914000	36245000	53668000	279540000	163450000	116090000	133860000	63884000	69976000	131680000	71137000	60541000	54291	935	51146	328440;328441;328442;328443;328444;328445;328446;328447;328448	442711;442712;442713;442714;442715;442716;442717;442718;442719;442720;442721	442719	689		11	
VGLAALIIQDFK	1	Unmodified	1286.7598	0.7598233	2936	Q5T160	RARS2	Probable arginine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			98.703	96.673	2	6.019E-05	82434	160511_QHF_FH_JSI9i_3	135.55	118.32			1.1862	1.1438	10.371	3	2	Median	1.3238	1.0922	14.173	2	2	Median	0.98744	1.1438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201320000	96981000	104330000	149730000	66236000	83490000	51589000	30745000	20844000	0	0	0	0	0	0	54292	2936	51147	328449;328450;328451	442722;442723;442724	442722			2	
VGLADLHPDVFATAPR	0	Unmodified	1677.8839	0.88385462	4545	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.479		9	5							2	3	6	3	76.122	75.567	2;3	6.9449E-06	67256	160511_QHF_FH_JSI10i_2	101.42	93.106			0.95105	0.9419	12.878	11	3	Median	1.193	1.051	20.877	2	0	Median	0.76561	0.93161	15.066	2	1	Median	1.0008	1.1189	14.208	4	2	Linear	0.89082	0.87813	4.9882	3	0	Median	1474300000	758010000	716340000	142000000	62269000	79727000	183340000	104380000	78962000	660550000	344020000	316520000	488460000	247340000	241130000	54293	4545	51148	328452;328453;328454;328455;328456;328457;328458;328459;328460;328461;328462;328463;328464;328465	442725;442726;442727;442728;442729;442730;442731;442732;442733;442734;442735;442736;442737;442738;442739;442740;442741;442742;442743;442744	442737			20	
VGLAVVGSVLGAFLTFPGLR	0	Unmodified	1972.151	0.15096834	5096	Q9NX61	TMEM161A	Transmembrane protein 161A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.99	94.54	3	3.3754E-10	56853	160513_QHF_FH_JSI10Kac_6	114.52	95.129			0.91029	0.9043	19.442	2	1	Median	1.2137	1.0376	NaN	1	1	Median	0.68273	0.78815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72398000	39601000	32796000	19127000	7370400	11757000	53271000	32231000	21040000	0	0	0	0	0	0	54294	5096	51149	328466;328467	442745;442746	442746			2	
VGLDPSQLPVGENGIV	0	Unmodified	1592.841	0.84098675	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1	0	3									1	1	1		94.268	93.92	2	0.0082676	83433	160511_QHF_FH_JSI9i_1	46.069	37.844			1.0413	0.95109	12.029	3	0	Median	1.1884	0.95109	NaN	1	0	Median	1.0413	1.1642	NaN	1	0	Median	0.96505	0.93995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84221000	41020000	43201000	24797000	12502000	12296000	33167000	15054000	18113000	26257000	13464000	12793000	0	0	0	54295	4101	51150	328468;328469;328470	442747;442748	442748			2	
VGLELIASENFASR	0	Unmodified	1504.7886	0.78855725	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									1	3	78.864	78.285	2	0.0016978	67666	160511_QHF_FH_JSI12i_2	59.542	23.582			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54296	1414	51151	328471;328472;328473;328474	442749;442750;442751;442752	442749			4	
VGLGFELEA	0	Unmodified	933.48075	0.48074791	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	2										2			84.46	84.314	1;2	0.0117	76511	160511_QHF_FH_JSI10i_1	48.504	37.135			0.6948	0.76434	4.712	2	0	Median	NaN	NaN	NaN	0	0	Median	0.6948	0.76434	4.712	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31839000	18185000	13653000	0	0	0	31839000	18185000	13653000	0	0	0	0	0	0	54297	5499	51152	328475;328476	442753;442754	442753			2	
VGLGLGYLELPQINYK	1	Unmodified	1775.9822	0.98217168	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	101.41	101.42	2	2.8667E-11	88079	160511_QHF_FH_JSI12i_3	188.96	173.7			1.2135	1.2357	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2135	1.2357	NaN	1	0	Median	118430000	58132000	60303000	0	0	0	0	0	0	0	0	0	118430000	58132000	60303000	54298	2344	51153	328477	442755	442755			1	
VGLIAAR	0	Unmodified	698.44391	0.44390889	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.19	6.61	3	3	4					2	4	4	5	4	3	29.861	26.048	2	0.0014324	21343	160511_QHF_FH_JSI9i_3	120.76	71.444			0.93304	0.9701	21.38	16	0	Median	1.2744	1.0849	6.9757	4	0	Median	0.90031	1.0641	10.798	5	0	Median	0.97972	0.91933	11.064	4	0	Median	0.59261	0.60459	14.89	3	0	Median	9500900000	5098700000	4402200000	2489200000	1097700000	1391600000	2694300000	1497700000	1196600000	2462400000	1351800000	1110600000	1855000000	1151500000	703440000	54299	2039	51154	328478;328479;328480;328481;328482;328483;328484;328485;328486;328487;328488;328489;328490;328491;328492;328493	442756;442757;442758;442759;442760;442761;442762;442763;442764;442765;442766;442767;442768;442769;442770;442771;442772;442773;442774;442775;442776	442766			21	
VGLIALK	1	Unmodified	712.48471	0.48471107	919	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.524	50.677	2	0.018612	43194	160511_QHF_FH_JSI12i_3	59.641	27.527			1.0446	1.0841	16.752	4	0	Median	1.5122	1.22	NaN	1	0	Median	0.91206	1.0298	NaN	1	0	Median	1.1963	1.1413	NaN	1	0	Median	0.8079	0.83149	NaN	1	0	Median	656900000	329700000	327200000	84619000	33106000	51513000	107370000	56914000	50461000	187830000	95881000	91953000	277070000	143800000	133280000	54300	919	51155	328494;328495;328496;328497	442777	442777			1	
VGLIGSCTNSSYEDMGR	0	Unmodified	1844.8033	0.80329739	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	54.179	53.561	2	1.5568E-15	46113	160511_QHF_FH_JSI12i_3	160.38	151.97			0.98953	1.0349	13.315	9	0	Median	1.581	1.3622	NaN	1	0	Median	0.94205	1.1112	4.1867	2	0	Median	0.88198	0.89185	7.4741	3	0	Plateau	0.91097	1.0271	10.565	3	0	Median	540070000	276360000	263720000	37251000	15272000	21980000	142840000	79757000	63078000	231870000	117120000	114740000	128120000	64204000	63920000	54301	4315	51156	328498;328499;328500;328501;328502;328503;328504;328505;328506	442778;442779;442780;442781;442782;442783;442784;442785;442786;442787;442788;442789;442790;442791;442792;442793;442794;442795;442796	442796			19	
VGLNWLALVHK	1	Unmodified	1248.7343	0.73427725	4726	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	85.459	81.027	3	1.134E-07	41071	160513_QHF_FH_JSI9Kac_6	106.29	94.077			0.98951	0.94971	19.276	8	0	Median	1.2021	0.98447	1.4973	2	0	Median	0.71347	0.8399	2.4554	2	0	Median	1.2856	1.1924	10.868	2	0	Median	0.72932	0.79374	21.784	2	0	Median	735840000	387100000	348740000	191820000	95055000	96761000	209770000	130380000	79397000	208360000	88055000	120310000	125880000	73614000	52269000	54302	4726	51157	328507;328508;328509;328510;328511;328512;328513;328514	442797;442798;442799;442800;442801;442802;442803;442804;442805;442806;442807;442808;442809;442810;442811;442812;442813;442814;442815;442816;442817;442818;442819;442820	442811			24	
VGLPPLEK	1	Unmodified	851.51165	0.5116541	1848	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	48.937	48.02	2	0.0028402	43382	160511_QHF_FH_JSI10i_1	77.058	16.27			0.85705	0.90345	25.71	9	0	Median	1.1683	0.97535	22.274	3	0	Plateau	0.68527	0.82336	26.256	2	0	Median	0.89997	0.90267	5.7554	2	0	Median	0.64943	0.68813	10.01	2	0	Median	912930000	468070000	444870000	171930000	70116000	101820000	224360000	118030000	106330000	307670000	152610000	155050000	208970000	127310000	81660000	54303	1848	51158	328515;328516;328517;328518;328519;328520;328521;328522;328523	442821;442822;442823;442824;442825;442826;442827;442828;442829;442830;442831;442832;442833;442834	442826			14	
VGLQVVAVK	1	Unmodified	911.5804	0.58040237	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.64	6.45	4	4	4			2	3	4	4	7	7	6	5	50.273	44.287	2	4.2165E-07	24481	160513_QHF_FH_JSI10Kac_5	136.11	81.564			0.91169	0.95924	14.58	25	1	Median	1.2968	1.044	12.551	7	1	Median	0.78822	0.89313	9.9996	7	0	Median	1.0705	1.0698	12.415	6	0	Median	0.81102	0.92093	7.515	5	0	Linear	20388000000	10077000000	10311000000	4105300000	1762200000	2343100000	5933400000	3263400000	2670000000	6032000000	2684900000	3347100000	4317400000	2366100000	1951300000	54304	980	51159	328524;328525;328526;328527;328528;328529;328530;328531;328532;328533;328534;328535;328536;328537;328538;328539;328540;328541;328542;328543;328544;328545;328546;328547;328548	442835;442836;442837;442838;442839;442840;442841;442842;442843;442844;442845;442846;442847;442848;442849;442850;442851;442852;442853;442854;442855;442856;442857;442858;442859;442860;442861;442862;442863;442864;442865;442866;442867;442868;442869;442870;442871;442872;442873;442874;442875;442876;442877;442878;442879;442880;442881;442882;442883;442884;442885;442886;442887;442888;442889;442890;442891;442892;442893	442883			59	
VGLQVVAVKAPGFGDNRK	2	Acetyl (K)	1896.0581	0.058130586	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	75.897	67.518	3	3.9946E-05	36547	160513_QHF_FH_JSI11Kac_6	91.622	81.701			0.50781	0.53706	8.5882	2	1	Median	NaN	NaN	NaN	0	0	Median	0.43863	0.50541	NaN	1	1	Median	0.58791	0.57068	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	61776000	46639000	15138000	0	0	0	14832000	13063000	1768900	31120000	17751000	13369000	15824000	15824000	0	54305	980	51160	328549;328550;328551	442894;442895;442896	442894	762		3	
VGLSTFK	1	Unmodified	750.42759	0.42759012	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.346	35.282	2	0.049097	30610	160511_QHF_FH_JSI11i_3	47.849	30.922			0.83818	0.81535	21.665	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0147	0.95034	NaN	1	1	Median	0.69236	0.69954	NaN	1	1	Median	1165900000	827430000	338440000	0	0	0	0	0	0	398670000	260870000	137800000	767200000	566560000	200640000	54306	2902	51161	328552;328553	442897;442898	442897			2	
VGLTHTMEHEDVIQIVK	1	Unmodified	1948.0088	0.0087971324	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	57.781	57.612	3;4	6.1336E-07	51079	160511_QHF_FH_JSI11i_3	118.47	100.11			0.80819	0.80288	17.29	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1766	1.125	NaN	1	0	Median	0.81785	0.84519	7.2625	2	0	Median	287760000	156570000	131200000	0	0	0	0	0	0	61526000	27641000	33885000	226240000	128920000	97310000	54307	1843	51162	328554;328555;328556	442899;442900;442901;442902;442903;442904;442905	442899			6	
VGLTNYAAAYCTGLLLAR	0	Unmodified	1926.0033	0.003317824	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38	1	5	8						7	4	6	6	5	91.332	88.289	2;3	7.5351E-190	41535	160513_QHF_FH_JSI12Kac_6	303.3	282.45			0.9286	1.0336	18.638	21	4	Median	1.4892	1.2636	12.334	4	0	Median	0.99606	1.1762	10.313	6	3	Median	0.89036	0.8527	7.6747	6	1	Median	0.92146	0.94194	6.0882	5	0	Median	5527000000	2838900000	2688200000	513140000	218600000	294540000	2297000000	1162500000	1134500000	1655400000	879870000	775500000	1061600000	577880000	483680000	54308	1590	51163	328557;328558;328559;328560;328561;328562;328563;328564;328565;328566;328567;328568;328569;328570;328571;328572;328573;328574;328575;328576;328577	442906;442907;442908;442909;442910;442911;442912;442913;442914;442915;442916;442917;442918;442919;442920;442921;442922;442923;442924;442925;442926;442927;442928;442929;442930;442931;442932;442933;442934;442935;442936;442937;442938;442939;442940;442941	442937			35	
VGLTSEILNSFEHEFLSK	1	Unmodified	2049.0419	0.0418714	2510	Q14181	POLA2	DNA polymerase alpha subunit B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.93	101.88	3	2.678E-54	91021	160511_QHF_FH_JSI11i_3	224.64	198.82			0.95187	0.84682	16.684	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.74263	0.84682	NaN	1	1	Median	1.1434	1.0913	NaN	1	0	Median	0.7924	0.79679	NaN	1	0	Median	831470000	409010000	422460000	0	0	0	48199000	30475000	17725000	422090000	176530000	245560000	361180000	202010000	159180000	54309	2510	51164	328578;328579;328580	442942;442943;442944;442945;442946	442942			5	
VGLVASQK	1	Unmodified	800.4756	0.47560295	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.25	0.829	1	1	2							1	1	1	1	16.644	16.391	2	0.0052958	13647	160511_QHF_FH_JSI11i_3	66.073	41.075			1.0265	1.0759	24.212	4	0	Median	1.7108	1.4601	NaN	1	0	Median	1.0231	1.208	NaN	1	0	Median	1.0298	0.95828	NaN	1	0	Median	0.84134	0.84755	NaN	1	0	Median	293080000	122580000	170500000	65586000	23441000	42145000	58665000	23255000	35410000	85698000	34687000	51011000	83135000	41202000	41933000	54310	802	51165	328581;328582;328583;328584	442947;442948;442949	442947			3	
VGLVLGR	0	Unmodified	712.45956	0.45955895	5770				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	37.555	36.692	2	0.010241	30664	160511_QHF_FH_JSI10i_3	75.682	0	+		1.2488	1.1396	18.438	7	0	Median	1.4052	1.1562	0	2	0	Median	0.75737	0.87753	0	2	0	Median	1.2488	1.1396	0	2	0	Median	0.72011	0.73644	NaN	1	0	Median	717130000	321140000	396000000	275400000	97781000	177610000	235140000	123130000	112020000	142780000	63639000	79146000	63807000	36588000	27219000	54311	5770	51166	328585;328586;328587;328588;328589;328590;328591	442950;442951;442952;442953;442954	442952			5	
VGLYDTYSNKPPQISSTYHK	2	Unmodified	2297.1328	0.13281167	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	49.727	48.971	3;4	7.5393E-12	41760	160511_QHF_FH_JSI12i_3	108.17	96.32			0.96869	0.95496	26.352	9	2	Median	1.374	1.1276	0.31421	2	0	Median	0.84589	1.0054	21.863	2	0	Median	1.0309	0.95496	7.2943	3	2	Median	0.57648	0.58729	5.6638	2	0	Median	2232400000	1232300000	1000100000	353100000	135220000	217880000	403240000	230990000	172240000	1081000000	592040000	488910000	395090000	274030000	121060000	54312	3736	51167	328592;328593;328594;328595;328596;328597;328598;328599;328600	442955;442956;442957;442958;442959;442960;442961;442962;442963;442964;442965;442966;442967;442968;442969;442970;442971;442972;442973	442971			19	
VGLYTIYVNPANTHQFAVGGR	0	Unmodified	2276.1702	0.17020023	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	2	2	1	1	79.239	72.527	2;3	5.1168E-107	39758	160513_QHF_FH_JSI10Kac_6	242.98	223.16			1.0179	1.0925	27.66	6	1	Median	1.7707	1.4715	10.061	2	0	Median	0.84469	1.0019	19.051	2	1	Median	1.0841	1.0411	NaN	1	0	Median	0.69615	0.75006	NaN	1	0	Median	965360000	472130000	493220000	259050000	96815000	162230000	535410000	282420000	252980000	107730000	56792000	50939000	63172000	36102000	27070000	54313	2962	51168	328601;328602;328603;328604;328605;328606	442974;442975;442976;442977;442978;442979;442980;442981	442980			8	
VGMDSTTVNYFALFEVISHSFVR	0	Unmodified	2618.2839	0.28390936	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.487	91.053	3	1.1362E-60	54876	160513_QHF_FH_JSI10Kac_6	197.92	184.02			1.0942	1.1024	16.884	4	0	Median	1.3452	1.1384	NaN	1	0	Median	0.89005	1.0676	NaN	1	0	Median	1.3641	1.3126	NaN	1	0	Median	0.83283	0.87414	NaN	1	0	Median	1396500000	667290000	729220000	436530000	185420000	251110000	465260000	251810000	213450000	279130000	110970000	168160000	215600000	119090000	96508000	54314	4164	51169	328607;328608;328609;328610	442982;442983;442984;442985	442985			4	
VGMEINHLHALFMSR	0	Unmodified	1753.8756	0.87561489	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.63	68.12	4	0.00080348	37099	160513_QHF_FH_JSI10Kac_6	57.525	44.693			0.82735	0.98279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82735	0.98279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	332410000	185600000	146820000	0	0	0	332410000	185600000	146820000	0	0	0	0	0	0	54315	5755	51170	328611	442986	442986			1	
VGMEQLVQNATFR	0	Unmodified	1491.7504	0.7503976	5696	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	2	2	2	1	77.676	68.56	2	3.101E-06	37358	160513_QHF_FH_JSI11Kac_6	142.91	117.52			1.0187	1.1444	25.619	7	5	Median	1.6461	1.3919	4.684	2	1	Median	0.78149	0.92308	30.399	2	1	Median	1.1029	1.0802	11.202	2	2	Median	0.72845	0.7735	NaN	1	1	Median	204280000	106810000	97469000	25187000	8119900	17067000	65499000	39028000	26470000	83217000	40681000	42536000	30380000	18985000	11395000	54316	5696	51171	328612;328613;328614;328615;328616;328617;328618	442987;442988;442989;442990;442991;442992;442993;442994	442989			8	
VGMGSSYNGQDEVDIK	1	Unmodified	1697.7567	0.75666477	4578	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	45.494	44.814	2	9.9864E-46	40337	160511_QHF_FH_JSI10i_1	248.64	237.11			1.1962	0.97543	12.356	3	2	Median	1.1962	0.97543	NaN	1	0	Median	0.82619	0.97159	NaN	1	1	Median	1.2394	1.2058	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	227130000	121930000	105200000	55956000	33940000	22016000	96551000	54291000	42260000	74623000	33697000	40926000	0	0	0	54317	4578	51172	328619;328620;328621;328622;328623;328624	442995;442996;442997;442998;442999;443000;443001	442998			7	
VGMIPVPYVEK	1	Unmodified	1230.6682	0.6682311	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	1	3	74.472	73.824	2	0.0011566	63856	160511_QHF_FH_JSI12i_2	70.363	50.033			0.85034	0.97362	18.204	6	1	Median	1.3546	1.1952	NaN	1	0	Median	0.82712	0.98876	1.524	2	0	Median	0.98865	0.92573	NaN	1	0	Median	0.75884	0.81377	24.707	2	1	Median	572390000	305500000	266880000	102180000	43799000	58383000	216830000	126890000	89939000	70625000	34901000	35724000	182750000	99909000	82838000	54318	1583	51173	328625;328626;328627;328628;328629;328630;328631	443002;443003;443004;443005	443004			4	
VGMKHYHLK	2	Acetyl (K)	1153.6066	0.6066339	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	16	0									4		1	2	1	32.232	23.31	3;4	0.0012918	13290	160513_QHF_FH_JSI11Kac_6	67.563	57.609			0.38174	0.38784	93.861	4	0	Median	NaN	NaN	NaN	0	0	Median	1.8389	2.1213	NaN	1	0	Median	0.30452	0.29085	3.7055	2	0	Median	0.47181	0.50381	NaN	1	0	Median	78971000	53496000	25475000	0	0	0	14663000	6340400	8322400	59460000	44555000	14905000	4847800	2599900	2247900	54319	1589	51174	328632;328633;328634;328635	443006;443007;443008;443009	443009	1601		4	
VGMRREAVQR	0	Oxidation (M)	1216.6459	0.64587295	972	P24468;P10589	NR2F2;NR2F1	COUP transcription factor 2;COUP transcription factor 1	yes	no	0	0	1	2		By MS/MS			2	0		1									1			19.427	18.64	3	0.016671	15920	160511_QHF_FH_JSI10i_2	35.944	10.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54320	972	51175	328636	443010	443010		535	1	
VGMVETNSQDRPVDDVK	1	Unmodified	1887.8996	0.89964061	5581	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	3	4	2	33.883	33.365	2;3	0.00014487	29704	160511_QHF_FH_JSI10i_1	67.416	51.825			1.2204	1.2401	18.2	10	2	Median	1.615	1.3506	NaN	1	0	Median	0.71157	0.86915	29.918	3	1	Plateau	1.2474	1.2401	5.9235	4	1	Median	1.0502	1.1309	21.973	2	0	Median	1604500000	782240000	822240000	229030000	98475000	130560000	465700000	263330000	202360000	648110000	295320000	352790000	261640000	125120000	136530000	54321	5581	51176	328637;328638;328639;328640;328641;328642;328643;328644;328645;328646	443011;443012;443013;443014;443015;443016;443017;443018;443019;443020;443021;443022;443023;443024;443025;443026;443027	443017			17	
VGNESPVQELK	1	Unmodified	1198.6194	0.61936665	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	32.262	31.854	2	0.0090958	28370	160511_QHF_FH_JSI11i_1	58.743	38.956			0.86273	0.85422	25.814	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0613	1.0253	NaN	1	1	Median	0.70134	0.7117	NaN	1	0	Median	291740000	156290000	135450000	0	0	0	0	0	0	159500000	76306000	83195000	132240000	79985000	52251000	54322	2902	51177	328647;328648	443028;443029	443028			2	
VGNEVATGTGPNK	1	Unmodified	1242.6204	0.62042929	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		13.108	12.924	2	0.013027	10575	160511_QHF_FH_JSI10i_1	54.471	35.2			0.56192	0.58258	5.432	2	2	Median	NaN	NaN	NaN	0	0	Median	0.53887	0.60539	NaN	1	1	Median	0.58596	0.56063	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38725000	20897000	17828000	0	0	0	18223000	8600900	9622300	20501000	12296000	8205600	0	0	0	54323	5004	51178	328649;328650	443030;443031	443031			2	
VGNEVATGTGPNKK	2	Unmodified	1370.7154	0.7153923	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	9.3994	9.4482	3	0.0069515	6815	160511_QHF_FH_JSI12i_3	40.857	33.132			0.65027	0.62628	5.0658	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69801	0.64912	NaN	1	0	Median	0.60579	0.60424	NaN	1	0	Median	117330000	65901000	51433000	0	0	0	0	0	0	41235000	18518000	22717000	76099000	47383000	28716000	54324	5004	51179	328651;328652	443032	443032			1	
VGNGFEEGTTQGPLINEK	1	Unmodified	1888.9167	0.91667089	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	51.852	51.18	2	1.9633E-16	45999	160511_QHF_FH_JSI10i_1	124.3	108.05			1.0236	1.0689	19.754	4	0	Median	1.6552	1.3346	NaN	1	0	Median	1.0832	1.2294	NaN	1	0	Median	0.96723	0.92942	NaN	1	0	Median	0.88228	0.90072	NaN	1	0	Median	116990000	53630000	63355000	26511000	10649000	15861000	29890000	13018000	16872000	36217000	17248000	18970000	24367000	12715000	11653000	54325	1746	51180	328653;328654;328655;328656;328657	443033;443034;443035;443036;443037;443038;443039;443040;443041;443042	443040			10	
VGNLGLATSFFNER	0	Unmodified	1523.7732	0.77324153	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.67	5.09		3	2						1	3	2	1		84.625	82.482	2	1.6773E-15	68905	160511_QHF_FH_JSI9i_3	168.02	153.33			0.85893	0.84761	20.981	6	0	Median	1.2935	1.0386	21.479	3	0	Median	0.67471	0.80225	9.977	2	0	Median	0.75236	0.75223	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	955320000	464420000	490890000	538770000	223510000	315260000	349980000	203320000	146660000	66574000	37596000	28978000	0	0	0	54326	154	51181	328658;328659;328660;328661;328662;328663	443043;443044;443045;443046;443047;443048;443049;443050;443051;443052	443045			10	
VGNLTVVGK	1	Unmodified	885.52837	0.5283668	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							2	2	1	1	32.19	31.314	2	0.00091672	26358	160511_QHF_FH_JSI12i_3	71.692	41.188			1.0294	0.98277	22.943	6	1	Median	1.1662	0.96995	10.943	2	0	Median	1.0592	1.268	37.573	2	1	Median	0.90114	0.90147	NaN	1	0	Median	0.957	0.99352	NaN	1	0	Median	766300000	374690000	391600000	188670000	74127000	114540000	219090000	116890000	102210000	243170000	120890000	122290000	115370000	62793000	52574000	54327	1111	51182	328664;328665;328666;328667;328668;328669	443053;443054;443055;443056;443057;443058	443058			6	
VGNLTVVGKEPESILQVLSQMEK	2	Oxidation (M)	2513.3411	0.34108989	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			2							1	1			99.951	99.747	3	0.0083198	82385	160511_QHF_FH_JSI10i_3	38.583	35.185			0.95462	0.94644	16.276	2	0	Median	1.2664	1.0619	NaN	1	0	Median	0.71961	0.84355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30092000	17328000	12764000	12360000	6148700	6211700	17732000	11179000	6552200	0	0	0	0	0	0	54328	1111	51183	328670;328671	443059	443059		748	1	
VGNLTVVGKEPESILQVLSQMEK	2	Unmodified	2497.3462	0.34617527	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		101.57	101.46	3	4.9996E-59	84051	160511_QHF_FH_JSI10i_3	214.57	199.81			0.9596	1.0908	27.227	3	0	Median	1.8599	1.4917	NaN	1	0	Median	0.9596	1.0908	NaN	1	0	Median	0.91983	0.86718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	711020000	341880000	369140000	125830000	38074000	87752000	388890000	215110000	173780000	196300000	88691000	107610000	0	0	0	54329	1111	51183	328672;328673;328674	443060;443061;443062	443061			3	
VGNPWDPNVLYGPLHTK	1	Unmodified	1905.9737	0.97373226	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	3	4	2	78.966	78.201	2;3	1.1172E-08	67745	160511_QHF_FH_JSI12i_2	137.44	133.22			1.1446	1.1482	15.057	9	2	Median	1.463	1.1987	6.0817	2	0	Median	1.0057	1.1933	11.913	2	0	Median	1.085	1.1097	21.809	3	1	Median	0.99757	1.0749	20.339	2	1	Median	1704400000	799320000	905080000	270640000	118960000	151680000	427610000	209720000	217890000	643760000	282540000	361220000	362390000	188110000	174280000	54330	1659	51184	328675;328676;328677;328678;328679;328680;328681;328682;328683;328684;328685	443063;443064;443065;443066;443067;443068;443069;443070;443071;443072;443073;443074;443075;443076;443077;443078;443079;443080;443081;443082;443083;443084;443085;443086;443087;443088;443089	443067			27	
VGNQIFQSR	0	Unmodified	1047.5461	0.54614213	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		3	3							2	2		2	27.931	26.937	2	0.0097011	21893	160511_QHF_FH_JSI9i_3	50.805	23.28			0.87922	0.95495	33.86	6	0	Median	1.4031	1.1721	35.741	2	0	Median	0.87922	1.0295	3.8685	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55094	0.62508	5.7622	2	0	Median	414390000	213170000	201210000	147600000	56265000	91332000	174450000	98563000	75884000	0	0	0	92343000	58345000	33998000	54331	6	51185	328686;328687;328688;328689;328690;328691	443090;443091;443092;443093;443094	443092			5	
VGNTPETR	0	Unmodified	872.43519	0.4351947	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	2	2	1	6.3093	4.754	2	0.0035516	3551	160511_QHF_FH_JSI11i_1	71.692	57.023			0.89735	0.92856	9.8461	6	0	Median	1.1067	0.90884	NaN	1	0	Median	0.77291	0.92856	2.9071	2	0	Median	1.0398	1.0096	3.8201	2	0	Median	0.72233	0.77671	NaN	1	0	Median	1481100000	781550000	699580000	100530000	44980000	55552000	499990000	256280000	243710000	493210000	239900000	253310000	387390000	240390000	147010000	54332	5574	51186	328692;328693;328694;328695;328696;328697	443095;443096;443097;443098;443099;443100;443101;443102;443103	443095			9	
VGNVEYFGLGNSPGFPLQYYPYYGK	1	Unmodified	2828.3486	0.34861811	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	101.44	101.32	3	0.0016033	87180	160511_QHF_FH_JSI12i_2	37.369	31.074			0.89109	1.052	2.5008	2	0	Median	NaN	NaN	NaN	0	0	Median	0.853	1.0707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93088	1.0335	NaN	1	0	Median	248300000	148550000	99752000	0	0	0	105740000	63090000	42650000	0	0	0	142560000	85457000	57102000	54333	822	51187	328698;328699	443104	443104			1	
VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR	1	Unmodified	3633.6092	0.6091555	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1	0	2											1	1	51.019	50.478	3	4.3938E-14	45648	160511_QHF_FH_JSI11i_1	76.06	68.318			1.0295	1.0218	25.888	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2845	1.2271	NaN	1	1	Median	0.82511	0.85088	NaN	1	1	Median	49543000	18489000	31054000	0	0	0	0	0	0	25499000	8416400	17083000	24044000	10073000	13971000	54334	5376	51188	328700;328701	443105;443106;443107	443106			3	
VGPAVELALAQVK	1	Unmodified	1293.7656	0.76563696	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		75.163	74.471	3	0.0097882	65353	160511_QHF_FH_JSI11i_2	40.725	31.292			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54335	1088	51189	328702;328703	443108;443109	443108			2	
VGPDTER	0	Unmodified	772.37153	0.37153181	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.3777	7.1405	2	0.031164	4918	160511_QHF_FH_JSI10i_1	53.554	14.336			0.84893	0.99394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84893	0.99394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1001000000	524480000	476490000	0	0	0	1001000000	524480000	476490000	0	0	0	0	0	0	54336	1208	51190	328704	443110	443110			1	
VGPDVVTDPAFLVTR	0	Unmodified	1584.8512	0.8511575	5020	Q9NV31	IMP3	U3 small nucleolar ribonucleoprotein protein IMP3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			83.6	83.454	2	0.0017469	75721	160511_QHF_FH_JSI10i_1	73.848	61.982			0.54441	0.61467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54441	0.61467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32310000	22960000	9350300	0	0	0	32310000	22960000	9350300	0	0	0	0	0	0	54337	5020	51191	328705	443111	443111			1	
VGPELLPPPK	1	Unmodified	1045.6172	0.61718181	2257	Q07864	POLE	DNA polymerase epsilon catalytic subunit A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	55.658	55.417	3	0.06173	47621	160511_QHF_FH_JSI12i_3	19.762	8.0482			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11299000	11299000	0	0	0	0	0	0	0	0	0	0	11299000	11299000	0	54338	2257	51192	328706	443112	443112			1	
VGPGAGESPGTPPFR	0	Unmodified	1424.7048	0.70482762	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	42.031	41.351	2	9.9045E-06	35498	160511_QHF_FH_JSI11i_2	125.97	108.11			0.96123	1.0493	8.5655	6	0	Median	1.4043	1.1891	NaN	1	0	Median	0.91873	1.1358	NaN	1	0	Median	1.0508	1.0292	6.0075	2	0	Median	0.92733	0.98622	5.4904	2	0	Median	524370000	252630000	271740000	92091000	34388000	57703000	81329000	42904000	38425000	186120000	90160000	95958000	164840000	85180000	79656000	54339	3736	51193	328707;328708;328709;328710;328711;328712	443113;443114;443115;443116;443117;443118;443119;443120;443121;443122;443123;443124	443120			12	
VGPGPALMLR	0	Unmodified	1009.5743	0.57427114	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	55.662	54.826	2	0.003101	46936	160511_QHF_FH_JSI12i_3	60.682	41.951			0.93521	0.94941	11.073	4	0	Median	1.3279	1.0989	NaN	1	0	Median	0.79342	0.9296	NaN	1	0	Median	1.0481	0.96964	NaN	1	0	Median	0.8345	0.84109	NaN	1	0	Median	947190000	474140000	473050000	305130000	132980000	172150000	256910000	148070000	108840000	221640000	109730000	111910000	163510000	83358000	80152000	54340	241	51194	328713;328714;328715;328716	443125;443126;443127;443128;443129;443130	443130			6	
VGPMPWLGPQTDESIK	1	Unmodified	1753.8709	0.87090667	1217	P22830	FECH	Ferrochelatase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.189	79.562	2	0.011428	69956	160511_QHF_FH_JSI11i_2	53.528	39.865			0.95098	0.91574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95098	0.91574	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14688000	7720400	6967300	0	0	0	0	0	0	14688000	7720400	6967300	0	0	0	54341	1217	51195	328717	443131	443131			1	
VGPNAPEEK	1	Unmodified	939.46616	0.46616048	2248	Q06787	FMR1	Fragile X mental retardation protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.075	11.758	2	0.012698	9416	160511_QHF_FH_JSI11i_1	47.198	26.916			0.80052	0.88164	42.783	2	2	Median	NaN	NaN	NaN	0	0	Median	1.012	1.1931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63323	0.65149	NaN	1	1	Median	145010000	75414000	69595000	0	0	0	73304000	34704000	38601000	0	0	0	71705000	40711000	30994000	54342	2248	51196	328718;328719;328720	443132;443133;443134	443132			3	
VGPPSPPEAK	1	Unmodified	977.5182	0.51819605	5821				yes	yes	0	0	0	0				By MS/MS	3	0			1										1	54.923	54.682	2	0.055886	46872	160511_QHF_FH_JSI12i_3	34.387	0.21405	+		0.8345	0.84109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8345	0.84109	NaN	1	0	Median	163510000	83358000	80152000	0	0	0	0	0	0	0	0	0	163510000	83358000	80152000	54343	5821	51197	328721	443135	443135			1	
VGPQVPLSEPGFR	0	Unmodified	1381.7354	0.73539946	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	62.202	61.507	2	0.015666	54019	160511_QHF_FH_JSI9i_2	51.927	40.079			1.2473	1.4248	5.7518	3	1	Median	1.6562	1.4248	NaN	1	1	Median	1.1907	1.4749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2473	1.3182	NaN	1	0	Median	151430000	64444000	86982000	44569000	14980000	29589000	48621000	20698000	27922000	0	0	0	58236000	28765000	29471000	54344	4751	51198	328722;328723;328724	443136;443137	443136			2	
VGPQYQAVVPDFDPAK	1	Unmodified	1729.8675	0.86753585	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	72.901	72.706	2;3	8.0668E-05	66311	160511_QHF_FH_JSI12i_1	77.185	58.917			0.66812	0.78508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66812	0.78508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28209000	18029000	10181000	0	0	0	28209000	18029000	10181000	0	0	0	0	0	0	54345	5371	51199	328725;328726	443138;443139	443138			2	
VGQADDSTKPTNK	2	Unmodified	1359.663	0.66302238	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	1		2	6.0295	5.5966	2;3	1.1363E-05	3641	160511_QHF_FH_JSI12i_1	95.428	83.16			0.7245	0.7431	35.177	3	1	Median	1.5834	1.3155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69113	0.71748	4.9611	2	1	Median	308200000	168000000	140200000	115350000	46378000	68973000	0	0	0	0	0	0	192850000	121620000	71225000	54346	1443	51200	328727;328728;328729;328730	443140;443141;443142;443143;443144	443140			5	
VGQAMASTEEK	1	Unmodified	1149.5336	0.53358811	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	1	2	13.753	10.577	2	1.9754E-05	8793	160511_QHF_FH_JSI9i_1	103.22	57.224			0.92966	1.1037	15.726	5	0	Median	1.4232	1.171	NaN	1	0	Median	0.92966	1.1037	NaN	1	0	Median	1.1003	1.1059	NaN	1	0	Median	0.79617	0.85353	6.5515	2	0	Median	1123100000	591100000	531960000	371790000	165180000	206610000	413710000	232740000	180980000	5535400	2970600	2564900	332020000	190210000	141810000	54347	1602	51201	328731;328732;328733;328734;328735	443145;443146;443147;443148;443149;443150;443151	443150			7	
VGQAMASTEEK	1	Oxidation (M)	1165.5285	0.52850274	1602	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			11.574	11.337	2	0.0076444	9101	160511_QHF_FH_JSI10i_1	74.841	42.521			0.75231	0.893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75231	0.893	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63306000	35149000	28157000	0	0	0	63306000	35149000	28157000	0	0	0	0	0	0	54348	1602	51201	328736	443152	443152		1281	1	
VGQASEIAR	0	Unmodified	929.49304	0.49304393	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		12.222	12.017	2	0.025868	9267	160511_QHF_FH_JSI11i_2	49.536	3.7975			0.98727	0.99886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98727	0.99886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	378480000	200520000	177960000	0	0	0	0	0	0	378480000	200520000	177960000	0	0	0	54349	4271	51202	328737	443153	443153			1	
VGQAVDVVGQAGK	1	Unmodified	1226.6619	0.66190017	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			31.871	31.071	2	0.0010607	27635	160511_QHF_FH_JSI10i_1	65.842	11.423			0.9653	0.94287	14.357	2	0	Median	1.0431	0.85185	NaN	1	0	Median	0.89334	1.0436	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	259800000	145250000	114560000	103500000	52125000	51380000	156300000	93121000	63176000	0	0	0	0	0	0	54350	2370	51203	328738;328739	443154;443155	443154			1	
VGQAVDVVGQAGKPK	2	Unmodified	1451.8096	0.80962704	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	4.89	1	8	6				3	1		2	6	6	5	29.348	27.705	2;3	6.6948E-06	23600	160511_QHF_FH_JSI11i_3	137.16	121.89			0.884	0.89386	30.264	17	7	Median	1.6981	1.465	8.3559	2	0	Median	0.81113	0.96921	26.738	6	4	Median	0.99821	0.97076	35.959	5	3	Median	0.75523	0.74476	6.1317	4	0	Linear	4543100000	2401200000	2141800000	475500000	223520000	251980000	770760000	427400000	343360000	1240000000	616990000	623030000	2056800000	1133300000	923480000	54351	2370	51204	328740;328741;328742;328743;328744;328745;328746;328747;328748;328749;328750;328751;328752;328753;328754;328755;328756;328757;328758	443156;443157;443158;443159;443160;443161;443162;443163;443164;443165;443166;443167;443168;443169;443170;443171;443172;443173;443174;443175;443176;443177;443178;443179;443180;443181	443158			26	
VGQAVDVVGQAGKPK	2	Acetyl (K)	1493.8202	0.82019173	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		51.145	41.728	2	0.0013895	22920	160513_QHF_FH_JSI11Kac_3	77.64	68.911			0.37615	0.35789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37615	0.35789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3019500	1376800	1642700	0	0	0	746800	0	746800	2272700	1376800	895860	0	0	0	54352	2370	51204	328759;328760	443182;443183;443184	443182	2442		3	
VGQDPVLR	0	Unmodified	882.49232	0.49231565	2222	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		20.755	20.459	2	0.020224	16892	160511_QHF_FH_JSI11i_2	46.016	32.808			1.5895	1.724	0.9918	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5013	1.7361	NaN	1	1	Median	1.6828	1.712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2085400000	803300000	1282100000	0	0	0	1178000000	491710000	686310000	907410000	311580000	595830000	0	0	0	54353	2222	51205	328761;328762	443185;443186	443186			2	
VGQEIEVR	0	Unmodified	928.49779	0.49779495	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			9.5754	2.739	2	0.032339	3590	160513_QHF_FH_JSI10Kac_6	48.504	2.7858			0.71313	0.85315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71313	0.85315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3057500	1764200	1293300	0	0	0	3057500	1764200	1293300	0	0	0	0	0	0	54354	1508	51206	328763	443187	443187			1	
VGQEIEVRPGIVSK	1	Unmodified	1509.8515	0.85149185	1508	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	5.97		6	7					4	2	4	5	5	5	45.389	41.567	2;3	1.4032E-05	36514	160511_QHF_FH_JSI11i_3	130.1	111.35			0.93298	0.9775	13.152	19	0	Median	1.2677	1.039	20.66	4	0	Median	0.85725	1.0245	6.4607	5	0	Median	0.93924	0.89336	7.4248	5	0	Linear	0.80049	0.88092	6.0253	5	0	Median	7210300000	3439200000	3771100000	1018500000	480410000	538080000	2717900000	1389000000	1328900000	2892600000	1243200000	1649400000	581330000	326570000	254770000	54355	1508	51207	328764;328765;328766;328767;328768;328769;328770;328771;328772;328773;328774;328775;328776;328777;328778;328779;328780;328781;328782	443188;443189;443190;443191;443192;443193;443194;443195;443196;443197;443198;443199;443200;443201;443202;443203;443204;443205;443206;443207;443208;443209;443210;443211;443212;443213;443214;443215	443192			28	
VGQGYPHDPPK	1	Unmodified	1193.5829	0.58292157	1935	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.6	3	6	3					2		2	2	5	5	14.664	12.967	2;3	0.0011699	11063	160511_QHF_FH_JSI10i_2	53.967	44.279			0.90014	0.94619	19.383	14	0	Median	1.5082	1.2558	9.9792	2	0	Median	0.78237	0.94866	11.271	2	0	Median	1.0255	1.0433	15.045	5	0	Median	0.72518	0.77862	12.774	5	0	Median	1733200000	897560000	835660000	287730000	118590000	169140000	288890000	170090000	118790000	631950000	313720000	318230000	524650000	295160000	229490000	54356	1935	51208	328783;328784;328785;328786;328787;328788;328789;328790;328791;328792;328793;328794;328795;328796	443216;443217;443218;443219;443220;443221;443222;443223;443224;443225;443226;443227;443228;443229;443230;443231;443232;443233;443234	443231			19	
VGQLSEGAIAAIMQK	1	Unmodified	1514.8127	0.81266351	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.65	0.478		6	11							4	4	5	4	79.544	78.829	2;3	5.8993E-27	70390	160511_QHF_FH_JSI11i_3	146.36	131.09			0.91736	0.99783	27.958	14	8	Median	1.3231	1.1689	44.876	4	3	Median	0.8186	0.97475	9.9808	4	2	Median	1.0741	0.99783	10.347	4	2	Median	0.66906	0.66981	4.2056	2	1	Median	959420000	534620000	424800000	120920000	48360000	72558000	161710000	91624000	70082000	333190000	179510000	153680000	343600000	215120000	128480000	54357	1293	51209	328797;328798;328799;328800;328801;328802;328803;328804;328805;328806;328807;328808;328809;328810;328811;328812;328813	443235;443236;443237;443238;443239;443240;443241;443242;443243;443244;443245;443246;443247;443248;443249;443250;443251;443252;443253;443254;443255;443256;443257;443258;443259	443240			25	
VGQTAFDVADEDILGYLEELQK	1	Unmodified	2452.201	0.20095082	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	102.63	102.52	3	4.7462E-08	90327	160511_QHF_FH_JSI11i_2	88.168	80.953			1.055	1.0606	28.17	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3051	1.5342	NaN	1	0	Median	1.055	1.0606	NaN	1	0	Median	0.81885	0.88239	NaN	1	1	Median	172030000	79754000	92281000	0	0	0	56277000	23881000	32396000	72334000	36346000	35988000	43424000	19526000	23897000	54358	227	51210	328814;328815;328816	443260;443261	443261			2	
VGRDYVQK	1	Unmodified	963.51378	0.51377937	1436;1437;3263	P35579;P35580;Q7Z406	MYH9;MYH10;MYH14	Myosin-9;Myosin-10;Myosin-14	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		9.0219	8.6115	2;3	0.0066818	6310	160511_QHF_FH_JSI11i_3	44.349	20.921			1.0259	1.0336	21.13	6	0	Median	1.1486	0.92024	21.107	2	0	Median	0.79244	0.89797	23.628	2	0	Median	1.2454	1.1627	20.371	2	0	Median	NaN	NaN	NaN	0	0	Median	1897500000	928850000	968670000	838400000	360070000	478320000	625440000	354790000	270660000	433680000	213990000	219690000	0	0	0	54359	1436;1437;3263	51211	328817;328818;328819;328820;328821;328822	443262;443263;443264;443265;443266;443267;443268	443262			7	
VGRPSNIGQAQPIIDQLAEEAR	0	Unmodified	2361.2401	0.24007071	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			77.081	75.665	3	0.0053862	63413	160511_QHF_FH_JSI10i_3	32.706	30.392			0.75355	0.86037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75355	0.86037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23624000	13589000	10035000	0	0	0	23624000	13589000	10035000	0	0	0	0	0	0	54360	5315	51212	328823	443269;443270	443269			2	
VGSAADIPINISETDLSLLTATVVPPSGR	0	Unmodified	2892.5444	0.54441738	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	102.22	102.11	3	3.6386E-43	92921	160511_QHF_FH_JSI10i_1	171.25	156.3			0.78915	0.93215	19.894	3	1	Median	1.4016	1.1423	NaN	1	1	Median	0.78915	0.93215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71703	0.76736	NaN	1	0	Median	951630000	465830000	485790000	132890000	32871000	100020000	547040000	279590000	267460000	0	0	0	271690000	153370000	118320000	54361	1192	51213	328824;328825;328826	443271;443272;443273	443272			3	
VGSAAQTR	0	Unmodified	788.41407	0.41406533	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.27	3.44	1	6	3				1			1	3	4	3	3.6621	2.5423	2	0.0070325	2124	160511_QHF_FH_JSI11i_1	60.76	21.542			0.81926	0.97128	16.326	11	0	Median	1.1134	0.93527	NaN	1	0	Median	0.80861	0.97128	14.915	3	0	Median	1.12	1.0621	5.6069	4	0	Median	0.69407	0.77027	7.591	3	0	Median	8091600000	4436400000	3655200000	22852000	10458000	12394000	1917200000	1055300000	861880000	3781500000	1948100000	1833400000	2370100000	1422600000	947520000	54362	1263	51214	328827;328828;328829;328830;328831;328832;328833;328834;328835;328836;328837	443274;443275;443276;443277;443278;443279;443280;443281;443282	443276			9	
VGSEIER	0	Unmodified	788.40283	0.40283194	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	9.4995	9.1268	2	0.035531	6716	160511_QHF_FH_JSI12i_2	49.59	6.5237			1.0023	0.99289	14.527	4	0	Median	1.3931	1.1575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0023	0.99289	7.4121	2	0	Median	0.73665	0.82445	NaN	1	0	Median	3323300000	1721700000	1601600000	619080000	276200000	342870000	0	0	0	2012000000	1048600000	963430000	692270000	396940000	295320000	54363	1765	51215	328838;328839;328840;328841	443283;443284;443285	443284			3	
VGSGDTNNFPYLEK	1	Unmodified	1539.7205	0.72053726	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	54.797	54.086	2	2.357E-21	48917	160511_QHF_FH_JSI11i_1	174.05	151.41			1.0783	1.0553	29.17	5	1	Median	1.3468	1.1154	NaN	1	0	Median	1.1692	1.4135	41.338	2	1	Median	1.0783	1.0457	NaN	1	0	Median	0.81412	0.87548	NaN	1	0	Median	2059600000	1007500000	1052100000	508720000	211670000	297040000	503570000	242180000	261390000	661390000	335180000	326210000	385940000	218510000	167430000	54364	4943	51216	328842;328843;328844;328845;328846	443286;443287;443288;443289;443290;443291;443292;443293;443294;443295;443296;443297;443298	443287			13	
VGSHITGGDIYGIVSENSLIK	1	Unmodified	2158.127	0.12699801	1479	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	1	3	5	81.389	80.992	2;3;4	3.8964E-57	70192	160511_QHF_FH_JSI12i_3	216.68	187			0.89132	0.91605	14.214	10	7	Median	1.5077	1.2748	NaN	1	1	Median	0.72211	0.85223	NaN	1	1	Median	1.0503	0.99831	9.0175	3	2	Median	0.85789	0.86522	6.2163	5	3	Median	2142000000	1126000000	1016000000	10018000	3406900	6611500	17001000	10824000	6177100	845840000	429980000	415860000	1269200000	681840000	587310000	54365	1479	51217	328847;328848;328849;328850;328851;328852;328853;328854;328855;328856	443299;443300;443301;443302;443303;443304;443305;443306;443307;443308;443309	443306			11	
VGSHPELLPSIAPSQNLVSK	1	Unmodified	2072.1266	0.12660408	2562	Q14686	NCOA6	Nuclear receptor coactivator 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.05	68.751	3	3.9751E-05	59570	160511_QHF_FH_JSI12i_3	78.794	63.556			0.72933	0.75308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72933	0.75308	NaN	1	1	Median	37259000	17226000	20033000	0	0	0	0	0	0	0	0	0	37259000	17226000	20033000	54366	2562	51218	328857	443310	443310			1	
VGSIFLQLK	1	Unmodified	1003.6066	0.60661712	3348	Q86VX2	COMMD7	COMM domain-containing protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	71.959	70.882	2	7.5297E-05	59455	160511_QHF_FH_JSI10i_3	95.909	78.061			0.79517	1.0763	17.949	3	0	Plateau	1.3195	1.0763	NaN	1	0	Median	0.97163	1.1154	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79517	0.80417	NaN	1	0	Median	205990000	109820000	96169000	39682000	19413000	20269000	46360000	26564000	19796000	0	0	0	119950000	63843000	56104000	54367	3348	51219	328858;328859;328860	443311;443312;443313;443314	443311			4	
VGSLDNVGHLPAGGAVK	1	Unmodified	1589.8526	0.85255449	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.27	3.17		8	6					1		4	3	4	4	48.217	46.741	2;3	3.993E-12	41075	160511_QHF_FH_JSI10i_2	155.02	145.73			1.0554	1.0327	18.506	15	0	Median	1.2312	1.1555	12.465	4	0	Linear	0.84859	1.0327	2.6958	3	0	Median	1.0752	1.0412	5.5947	4	0	Median	0.73049	0.78178	13.405	4	0	Median	4565100000	2307300000	2257800000	532870000	245880000	286990000	756220000	397630000	358600000	1763300000	859900000	903390000	1512700000	803890000	708840000	54368	1298	51220	328861;328862;328863;328864;328865;328866;328867;328868;328869;328870;328871;328872;328873;328874;328875	443315;443316;443317;443318;443319;443320;443321;443322;443323;443324;443325;443326;443327;443328;443329;443330;443331;443332;443333;443334;443335;443336;443337;443338;443339;443340;443341;443342	443334			28	
VGSLNCIVAVSQNMGIGK	1	Unmodified	1845.9441	0.94408839	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	84.876	84.79	2;3	5.5108E-11	73619	160511_QHF_FH_JSI12i_3	160.84	142.71			0.82103	0.93879	9.5867	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9008	0.85301	13.551	2	0	Median	0.79429	0.84861	NaN	1	1	Median	164910000	78838000	86076000	0	0	0	0	0	0	106000000	53506000	52494000	58914000	25332000	33582000	54369	763	51221	328876;328877;328878;328879;328880;328881	443343;443344;443345;443346;443347;443348;443349	443348			7	
VGSLSWNSYILSSGSR	0	Unmodified	1711.8529	0.85294842	2312	Q12834	CDC20	Cell division cycle protein 20 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.424	73.783	2	1.0126E-17	40280	160513_QHF_FH_JSI10Kac_6	146.96	131.07			0.78219	0.9024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78219	0.9024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57456000	32695000	24761000	0	0	0	57456000	32695000	24761000	0	0	0	0	0	0	54370	2312	51222	328882	443350	443350			1	
VGSLYPEMSAHER	0	Unmodified	1474.6875	0.68746299	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	34.983	34.919	2;3	0.00035882	30302	160511_QHF_FH_JSI11i_3	50.843	50.154			1.0362	1.0227	20.984	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2607	1.1863	NaN	1	0	Median	0.85176	0.88171	NaN	1	0	Median	278680000	138580000	140100000	0	0	0	0	0	0	144800000	66898000	77907000	133870000	71683000	62189000	54371	2516	51223	328883;328884;328885	443351;443352;443353;443354	443351			4	
VGSPFELVVSGNK	1	Unmodified	1331.7085	0.70851601	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	71.869	70.795	2;3	8.6478E-06	60997	160511_QHF_FH_JSI12i_2	131.43	105.49			0.84568	0.8261	13.482	2	2	Median	0.88616	0.75099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80705	0.90873	NaN	1	1	Median	211170000	96704000	114470000	54770000	29497000	25273000	0	0	0	0	0	0	156400000	67207000	89192000	54372	3173	51224	328886;328887;328888	443355;443356;443357	443355			3	
VGSPNAAVLWLWSSHNR	0	Unmodified	1892.9646	0.96456455	123	O00391	QSOX1	Sulfhydryl oxidase 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	82.658	75.141	3	1.7074E-05	42007	160513_QHF_FH_JSI10Kac_6	90.654	66.754			0.90528	1.0258	17.892	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96966	1.1641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84517	0.90386	NaN	1	1	Median	186340000	98943000	87393000	0	0	0	142740000	74410000	68327000	0	0	0	43598000	24532000	19065000	54373	123	51225	328889;328890	443358;443359;443360	443360			3	
VGSSNFR	0	Unmodified	765.37695	0.37695154	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.21		4	4				1	4	1	3	4	4	3	11.131	7.2581	2	0.0062693	4999	160513_QHF_FH_JSI9Kac_5	75.311	75.311		+	0.8852	0.97636	13.994	13	0	Median	1.4661	1.1845	1.8922	2	0	Median	0.77743	0.90626	6.7683	4	0	Linear	0.95535	1.0286	8.996	4	0	Linear	0.75265	0.78848	8.2301	3	0	Median	13438000000	6816600000	6620900000	3071200000	1321200000	1750000000	3994000000	2136400000	1857600000	3347900000	1623200000	1724700000	3024500000	1735900000	1288600000	54374	51	51226	328891;328892;328893;328894;328895;328896;328897;328898;328899;328900;328901;328902;328903;328904	443361;443362;443363;443364;443365;443366;443367;443368;443369;443370;443371;443372;443373	443365			13	
VGSTSENITQK	1	Unmodified	1162.583	0.58298115	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	15.498	12.797	2	1.3713E-05	10642	160511_QHF_FH_JSI11i_1	106.4	86.623			0.88899	0.91165	17.869	6	0	Median	1.388	1.0941	NaN	1	0	Median	0.7055	0.8354	NaN	1	0	Median	1.0328	1.0058	20.808	2	0	Median	0.76764	0.83033	20.129	2	0	Median	3854000000	1882400000	1971600000	1090500000	443120000	647350000	872860000	460750000	412110000	1020000000	516750000	503230000	870670000	461770000	408900000	54375	154	51227	328905;328906;328907;328908;328909;328910	443374;443375;443376;443377;443378;443379;443380;443381;443382	443375			9	
VGSVEEFQGQER	0	Unmodified	1363.6368	0.63680763	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.257	28.663	2	0.001217	25584	160511_QHF_FH_JSI12i_1	64.439	49.288			1.0706	1.0692	26.398	4	1	Median	1.3628	1.1097	NaN	1	0	Median	1.0454	1.2705	NaN	1	0	Median	1.0965	1.0302	NaN	1	1	Median	0.67186	0.68786	NaN	1	0	Median	247800000	120790000	127010000	48245000	19205000	29040000	65605000	32118000	33487000	66883000	28866000	38017000	67066000	40603000	26463000	54376	4856	51228	328911;328912;328913;328914	443383;443384;443385;443386	443384			4	
VGSVLQEGCGK	1	Unmodified	1132.5547	0.55465791	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								3	2	3	2	22.597	21.912	2	5.5561E-06	18864	160511_QHF_FH_JSI11i_1	105.98	74.901			0.9678	1.0652	30.105	7	4	Median	1.5988	1.4029	65.111	2	2	Median	0.93029	1.0932	0.77556	2	1	Median	1.0407	1.027	5.1643	2	1	Median	0.96474	1.0551	NaN	1	0	Median	894130000	469520000	424610000	65375000	22372000	43004000	374960000	207510000	167440000	391950000	210350000	181600000	61846000	29280000	32566000	54377	1367	51229	328915;328916;328917;328918;328919;328920;328921;328922;328923;328924	443387;443388;443389;443390;443391;443392;443393;443394;443395;443396;443397;443398	443388			12	
VGTALPGK	1	Unmodified	741.43849	0.43848916	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	18.954	18.388	2	0.052614	15951	160511_QHF_FH_JSI12i_1	36.701	12.069			1.0784	1.0891	20.017	7	0	Median	1.4184	1.196	2.8084	2	0	Median	0.82207	0.98359	8.269	2	0	Median	1.1276	1.1168	3.5418	2	0	Median	0.66024	0.68215	NaN	1	0	Median	709330000	358850000	350480000	145160000	50306000	94852000	226920000	126310000	100610000	234710000	116500000	118210000	102540000	65729000	36806000	54378	2216	51230	328925;328926;328927;328928;328929;328930;328931	443399	443399			1	
VGTAQLALVAR	0	Unmodified	1097.6557	0.65569258	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	50.934	50.086	2	0.00034115	42838	160511_QHF_FH_JSI12i_3	74.533	57.293			0.73907	0.78883	31.497	4	0	Linear	1.9245	1.5461	NaN	1	0	Median	1.0608	1.2303	NaN	1	0	Median	0.98188	0.9155	NaN	1	0	Median	0.729	0.75854	NaN	1	0	Median	308510000	149710000	158790000	24272000	8185300	16087000	45387000	25101000	20286000	104200000	42559000	61643000	134650000	73868000	60778000	54379	5320	51231	328932;328933;328934;328935	443400;443401;443402;443403	443402			4	
VGTASVLQPVKK	2	Unmodified	1225.7394	0.73942221	2800	Q2TAL8	QRICH1	Glutamine-rich protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	29.766	29.712	3	0.0033796	25062	160511_QHF_FH_JSI12i_3	51.359	44.661			0.71098	0.76327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71098	0.76327	NaN	1	1	Median	47762000	27719000	20043000	0	0	0	0	0	0	0	0	0	47762000	27719000	20043000	54380	2800	51232	328936	443404	443404			1	
VGTDLLEEEITK	1	Unmodified	1345.6977	0.69767655	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	66.914	66.162	2	1.6002E-06	58810	160511_QHF_FH_JSI9i_1	126.19	105.99			0.76813	0.73745	20.355	8	1	Median	1.0616	0.89336	17.27	2	1	Median	0.69361	0.84477	34.343	2	0	Median	0.75979	0.75275	24.238	2	0	Median	0.63606	0.6863	0.31449	2	0	Median	2447600000	1218600000	1229000000	655420000	230550000	424870000	526120000	266350000	259770000	748190000	406710000	341480000	517850000	315020000	202830000	54381	1327	51233	328937;328938;328939;328940;328941;328942;328943;328944	443405;443406;443407;443408;443409;443410;443411;443412;443413;443414;443415;443416;443417;443418;443419;443420;443421	443417			17	
VGTDLLEEEITKFEEHVQSVDIAAFNK	2	Unmodified	3060.5292	0.52916125	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	2	4	4	100.26	97.423	3;4	8.4231E-151	88675	160511_QHF_FH_JSI12i_3	281.76	271.13			0.91639	0.93535	22.984	12	1	Median	1.4255	1.219	10.128	2	0	Median	0.88243	1.0586	16.48	2	0	Median	0.99671	0.94246	7.4348	4	0	Median	0.69627	0.73127	17.941	4	1	Median	3972400000	2122700000	1849600000	518580000	203320000	315260000	424290000	224630000	199660000	2026900000	1028500000	998410000	1002600000	666270000	336300000	54382	1327	51234	328945;328946;328947;328948;328949;328950;328951;328952;328953;328954;328955;328956	443422;443423;443424;443425;443426;443427;443428;443429;443430;443431	443427			10	
VGTDLLEEEITKFEEHVQSVDIAAFNKI	2	Unmodified	3173.6132	0.61322523	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By matching	10.1	6.77		2	1						4	2	1	2	2	99.771	94.936	4	1.9572E-39	50491	160513_QHF_FH_JSI9Kac_6	147.25	131.47			0.89751	0.91766	32.281	7	0	Median	1.1575	0.99497	18.063	2	0	Median	0.79836	0.94173	NaN	1	0	Median	1.1932	1.1779	37.829	2	0	Median	0.66873	0.69361	39.585	2	0	Median	1159300000	657070000	502230000	227560000	109880000	117680000	356670000	209680000	146990000	295400000	144740000	150650000	279670000	192760000	86909000	54383	1327	51235	328957;328958;328959;328960;328961;328962;328963	443432;443433;443434;443435;443436;443437	443434			6	
VGTDMLEEQITAFEDYVQSMDVAAFNK	1	Unmodified	3050.3889	0.3889043	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.48	103.38	3	6.1379E-26	91145	160511_QHF_FH_JSI11i_2	133.95	127.37			1.199	1.2369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.199	1.2369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93127000	48806000	44321000	0	0	0	0	0	0	93127000	48806000	44321000	0	0	0	54384	1245	51236	328964	443438;443439	443438			2	
VGTDMLEEQITAFEDYVQSMDVAAFNKI	1	Unmodified	3163.473	0.47296828	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9	7		1							1		1	1		102.8	99.892	3	4.0688E-49	56725	160513_QHF_FH_JSI10Kac_6	170.82	170.8			0.96458	1.0247	31.972	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7117	0.81737	NaN	1	0	Median	1.3073	1.2847	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	127370000	63189000	64183000	0	0	0	114490000	59286000	55208000	12878000	3903300	8975100	0	0	0	54385	1245	51237	328965;328966	443440;443441;443442	443441			3	
VGTECGNQK	1	Unmodified	991.43929	0.4392938	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.1549	1.8617	2	3.7951E-06	2599	160511_QHF_FH_JSI11i_1	121.62	95.017			0.7866	0.87327	19.476	7	0	Median	1.4232	1.1403	NaN	1	0	Median	0.79529	0.94108	6.7001	2	0	Median	0.7114	0.69585	13.428	2	0	Median	0.75123	0.80687	11.185	2	0	Median	2195000000	1151500000	1043500000	254000000	119590000	134410000	710350000	362700000	347650000	664670000	362920000	301750000	565950000	306250000	259700000	54386	1192	51238	328967;328968;328969;328970;328971;328972;328973	443443;443444;443445;443446;443447;443448;443449;443450;443451;443452;443453;443454	443443			12	
VGTFFSEVKPAGPTVEQQGEMAR	1	Unmodified	2464.2057	0.20565904	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		64.644	63.683	3	6.7082E-11	56627	160511_QHF_FH_JSI11i_3	100.94	92.755			0.85475	0.9024	18.711	4	0	Median	1.6033	1.2713	NaN	1	0	Median	0.73557	0.87514	6.0492	2	0	Median	0.93711	0.89155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	632750000	321890000	310860000	164450000	70824000	93625000	339820000	191150000	148670000	128490000	59919000	68566000	0	0	0	54387	1837	51239	328974;328975;328976;328977	443455;443456;443457;443458;443459;443460;443461;443462	443455			8	
VGTFFSEVKPAGPTVEQQGEMAR	1	Oxidation (M)	2480.2006	0.20057366	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	1	1		By MS/MS			3	0			2								2			60.57	59.046	3	0.0013347	49468	160511_QHF_FH_JSI10i_3	48.229	30.405			0.73265	0.86661	10.455	2	2	Median	NaN	NaN	NaN	0	0	Median	0.73265	0.86661	10.455	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154640000	88936000	65703000	0	0	0	154640000	88936000	65703000	0	0	0	0	0	0	54388	1837	51239	328978;328979	443463;443464	443464		1513	2	
VGTGEPCCDWVGDEGAGHFVK	1	Unmodified	2275.9627	0.96265158	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.783	57.279	3	4.3326E-07	49677	160511_QHF_FH_JSI11i_2	82.586	73.539			1.1407	1.1326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1407	1.1326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44763000	21832000	22931000	0	0	0	0	0	0	44763000	21832000	22931000	0	0	0	54389	1764	51240	328980;328981	443465;443466;443467	443466			3	
VGTGEPVETDNPVEARSK	1	Unmodified	1883.9225	0.92248455	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	100.69	100.57	3	0.045729	89097	160511_QHF_FH_JSI10i_2	19.292	9.6343			0.56146	0.60881	48.211	3	0	Median	0.42142	0.35715	NaN	1	0	Median	0.75283	0.93496	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56146	0.60881	NaN	1	0	Median	97496000	62333000	35163000	29149000	19128000	10021000	24225000	17014000	7211100	0	0	0	44122000	26191000	17931000	54390	3821	51241	328982;328983;328984	443468	443468			1	
VGTHGGTLSSYIVK	1	Unmodified	1417.7565	0.75652884	5063	Q9NW82	WDR70	WD repeat-containing protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	3	2	3	2	43.706	41.15	2;3	3.189E-15	35719	160511_QHF_FH_JSI11i_3	131.53	112.91			0.7696	0.92965	20.594	10	0	Plateau	1.3647	1.0951	20.101	3	0	Plateau	0.91378	1.0596	8.4964	2	0	Median	0.86642	0.8177	26.787	3	0	Plateau	0.88528	0.89751	10.057	2	0	Median	1580900000	837500000	743370000	347520000	163210000	184320000	359250000	223360000	135890000	363960000	175310000	188650000	510150000	275630000	234510000	54391	5063	51242	328985;328986;328987;328988;328989;328990;328991;328992;328993;328994	443469;443470;443471;443472;443473;443474;443475;443476;443477;443478;443479;443480;443481;443482;443483	443469			15	
VGTIDDDPEYRK	1	Unmodified	1406.6678	0.66777341	4565	Q9BZI7	UPF3B	Regulator of nonsense transcripts 3B	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		22.811	22.476	3	0.060817	18618	160511_QHF_FH_JSI11i_2	22.055	8.1495			1.2085	1.2116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2085	1.2116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25283000	9554900	15728000	0	0	0	0	0	0	25283000	9554900	15728000	0	0	0	54392	4565	51243	328995	443484	443484			1	
VGTLVGEDK	1	Unmodified	916.48656	0.48656157	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	20.667	20.152	2	0.0060012	17291	160511_QHF_FH_JSI10i_1	55.064	28.462			0.97562	1.044	13.974	4	0	Median	1.3614	1.1129	NaN	1	0	Median	0.90001	1.0604	NaN	1	0	Median	1.0576	1.0278	NaN	1	0	Median	0.75845	0.81272	NaN	1	0	Median	417490000	208840000	208650000	104390000	42188000	62203000	96328000	52008000	44320000	109410000	56484000	52924000	107370000	58162000	49204000	54393	5319	51244	328996;328997;328998;328999	443485;443486;443487	443486			3	
VGTSFPHESTFGVGNFNAFK	1	Unmodified	2142.0171	0.017053633	3361	Q86WP2	GPBP1	Vasculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.49	76.717	3	3.1012E-06	68365	160511_QHF_FH_JSI11i_3	82.01	73.41			1.2635	1.221	40.719	4	3	Median	1.5173	1.2703	NaN	1	1	Median	0.47005	0.54973	NaN	1	1	Median	1.2575	1.1758	NaN	1	0	Median	1.2695	1.268	NaN	1	1	Median	123610000	55021000	68591000	14851000	3563400	11287000	19466000	12557000	6908900	46554000	20017000	26537000	42742000	18884000	23858000	54394	3361	51245	329000;329001;329002;329003	443488;443489;443490;443491;443492;443493	443488			6	
VGTSFSIPVVSDVR	0	Unmodified	1461.7827	0.78274359	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	2	1	79.548	78.822	2	2.258E-06	68051	160511_QHF_FH_JSI12i_2	152.85	126.81			0.57453	0.64155	31.339	7	4	Median	0.68727	0.58845	30.705	2	2	Median	0.54674	0.66501	35.618	2	1	Median	0.57756	0.5705	58.239	2	1	Median	0.57453	0.64155	NaN	1	0	Median	891230000	563240000	328000000	141890000	77844000	64050000	218450000	135530000	82920000	409310000	272200000	137110000	121570000	77661000	43914000	54395	3916	51246	329004;329005;329006;329007;329008;329009;329010	443494;443495;443496;443497;443498;443499;443500;443501;443502	443496			9	
VGTVIGSNK	1	Unmodified	873.49198	0.4919813	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.7	4	4	4				3	2		3	4	5	5	17.45	14.255	2	0.00016118	12327	160511_QHF_FH_JSI9i_2	88.37	35.654			0.91622	0.98422	32.049	15	0	Median	1.6182	1.328	35.975	2	0	Median	1.0252	1.2388	15.929	3	0	Plateau	0.99282	1.0289	15.192	5	0	Median	0.55815	0.62055	18.242	5	0	Median	3867900000	2010900000	1857000000	521270000	225300000	295970000	900730000	455530000	445200000	1295700000	620000000	675730000	1150200000	710060000	440130000	54396	939	51247	329011;329012;329013;329014;329015;329016;329017;329018;329019;329020;329021;329022;329023;329024;329025;329026;329027	443503;443504;443505;443506;443507;443508;443509;443510;443511;443512;443513;443514;443515;443516;443517;443518;443519;443520;443521;443522;443523;443524;443525;443526;443527	443519			25	
VGTVIGSNKLEQMPSK	2	Unmodified	1686.8975	0.89745577	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			10							3	3	3	1	44.161	43.343	2;3	3.5205E-06	38170	160511_QHF_FH_JSI11i_3	131.69	116.43			1.0988	0.9923	46.772	8	4	Median	1.2808	1.0638	13.571	2	1	Median	0.53924	0.61989	43.385	2	1	Median	1.1725	1.0881	39.529	3	2	Median	0.55229	0.54983	NaN	1	0	Median	1500900000	715670000	785250000	373140000	134120000	239030000	412280000	236890000	175390000	490210000	216100000	274110000	225290000	128560000	96730000	54397	939	51248	329028;329029;329030;329031;329032;329033;329034;329035;329036;329037	443528;443529;443530;443531;443532;443533;443534;443535;443536;443537;443538;443539;443540;443541	443531			14	
VGTVLLIMHTLK	1	Unmodified	1323.7948	0.7948286	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									3	1		2		80.309	71.222	2;3	1.316E-05	39146	160513_QHF_FH_JSI11Kac_6	90.731	90.731			1.5564	1.4045	41.379	3	0	Plateau	1.2538	1.0692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1899	2.1075	18.817	2	0	Median	NaN	NaN	NaN	0	0	Median	167640000	64539000	103100000	90979000	37914000	53065000	0	0	0	76664000	26625000	50038000	0	0	0	54398	1718	51249	329038;329039;329040	443542;443543;443544	443543			3	
VGTYQLAIVAK	1	Unmodified	1161.6758	0.67575932	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.28		2	3				1	3	3	2	4	3	3	63.39	57.202	2	9.1132E-05	48994	160511_QHF_FH_JSI12i_3	88.681	77.087			0.99957	0.96592	29.654	12	1	Median	1.2746	1.0985	9.9407	2	0	Median	0.93275	1.1156	30.647	4	1	Median	1.1764	1.1033	10.167	3	0	Plateau	0.55394	0.60704	18.71	3	0	Median	670080000	352230000	317840000	135760000	62677000	73085000	215500000	127670000	87828000	159120000	75611000	83511000	159690000	86273000	73419000	54399	4456	51250	329041;329042;329043;329044;329045;329046;329047;329048;329049;329050;329051;329052	443545;443546;443547;443548;443549;443550;443551;443552;443553;443554	443552			10	
VGVASSEELAR	0	Unmodified	1116.5775	0.57750184	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	28.353	27.446	2	0.0014664	22978	160511_QHF_FH_JSI12i_2	75.378	51.61			0.86071	0.95458	33.06	4	0	Median	1.6276	1.3826	NaN	1	0	Median	0.71566	0.88039	NaN	1	0	Median	1.0351	1.035	NaN	1	0	Median	0.57585	0.62585	NaN	1	0	Median	178060000	86880000	91180000	51718000	18683000	33035000	34048000	18631000	15417000	52842000	25309000	27533000	39453000	24257000	15195000	54400	720	51251	329053;329054;329055;329056	443555;443556;443557;443558;443559	443555			5	
VGVDPLIIPTDYWK	1	Unmodified	1614.8657	0.86574494	4930	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	101.08	100.96	2	3.4954E-06	91654	160511_QHF_FH_JSI11i_1	125.97	110.7			2.726	2.7633	70.123	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6167	4.5371	NaN	1	1	Median	1.6095	1.683	NaN	1	1	Median	347060000	57768000	289290000	0	0	0	0	0	0	243310000	31376000	211930000	103750000	26392000	77356000	54401	4930	51252	329057;329058	443560;443561	443560			2	
VGVDYEGGGCR	0	Unmodified	1167.4979	0.49787131	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.474	20.953	2	0.0051326	17870	160511_QHF_FH_JSI9i_1	53.756	48.768			0.97216	0.99308	13.337	4	0	Median	1.5201	1.2151	NaN	1	0	Median	0.80322	0.94063	NaN	1	0	Median	0.92174	0.90092	NaN	1	0	Median	1.0253	1.0485	NaN	1	0	Median	179790000	85384000	94407000	24972000	10715000	14256000	42064000	19607000	22457000	55474000	30800000	24673000	57280000	24261000	33019000	54402	2194	51253	329059;329060;329061;329062	443562;443563;443564;443565	443565			4	
VGVEVPDVNIEGPEGK	1	Unmodified	1636.8308	0.83081599	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	3	2	2	69.39	68.831	2;3	7.039E-07	62228	160511_QHF_FH_JSI10i_1	142.91	134.68			0.95388	0.98435	13.105	8	2	Median	1.2748	1.0521	10.44	2	1	Median	0.79957	0.95692	5.0237	2	1	Median	1.1016	1.0701	0.72812	2	0	Median	0.76016	0.80016	1.197	2	0	Median	1267500000	657250000	610280000	229530000	106740000	122790000	357860000	208770000	149090000	327250000	152710000	174530000	352900000	189030000	163870000	54403	2286	51254	329063;329064;329065;329066;329067;329068;329069;329070;329071	443566;443567;443568;443569;443570;443571;443572;443573;443574;443575;443576;443577;443578;443579;443580;443581;443582;443583	443574			18	
VGVGHAGEWAR	0	Unmodified	1137.5679	0.56794021	1320	P29372	MPG	DNA-3-methyladenine glycosylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	23.188	22.542	3	0.013341	18404	160511_QHF_FH_JSI12i_3	34.386	28.845			1.0927	1.0178	20.595	4	0	Median	1.2858	1.0424	NaN	1	0	Median	1.1398	1.3076	NaN	1	0	Median	1.0476	0.99381	NaN	1	0	Median	0.74157	0.79138	NaN	1	0	Median	216180000	107570000	108610000	38635000	16276000	22360000	49789000	23893000	25895000	80287000	38132000	42155000	47472000	29271000	18202000	54404	1320	51255	329072;329073;329074;329075	443584;443585;443586;443587;443588;443589	443589			6	
VGVGTCGIADKPMTQYQDTSK	2	Unmodified	2255.0562	0.05621761	588	O75940	SMNDC1	Survival of motor neuron-related-splicing factor 30	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		45.56	45.56	3	0.00082938	40198	160511_QHF_FH_JSI11i_3	45.916	32.489			0.89806	0.87127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89806	0.87127	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63695000	28272000	35422000	0	0	0	0	0	0	63695000	28272000	35422000	0	0	0	54405	588	51256	329076	443590;443591	443591			2	
VGVGTSFGLPQTR	0	Unmodified	1317.7041	0.70409934	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	58.417	57.522	2	0.0002563	48025	160511_QHF_FH_JSI10i_3	76.843	66.133			0.77518	0.85604	36.121	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9701	1.1051	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61943	0.66308	NaN	1	0	Median	84150000	46655000	37495000	0	0	0	36201000	18384000	17817000	0	0	0	47949000	28271000	19678000	54406	1718	51257	329077;329078	443592;443593;443594	443593			3	
VGVHIADVSYFVPEGSDLDK	1	Unmodified	2146.0582	0.058249745	3465	Q8IYB7	DIS3L2	DIS3-like exonuclease 2	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	84.316	84.143	3	0.00024513	73030	160511_QHF_FH_JSI12i_3	53.453	36.769			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29657000	18787000	10871000	0	0	0	0	0	0	0	0	0	29657000	18787000	10871000	54407	3465	51258	329079;329080	443595;443596	443595			2	
VGVIGFPNVGK	1	Unmodified	1085.6233	0.62332982	4481	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	2	2	66.458	65.657	2	1.3795E-05	54966	160511_QHF_FH_JSI10i_3	106.36	95.646			1.0288	1.1722	19.56	9	1	Median	1.6412	1.342	7.9634	2	0	Median	1.0288	1.1722	13.412	3	0	Median	1.1051	1.0884	12.797	2	0	Median	0.77981	0.84293	6.8245	2	1	Median	998630000	526090000	472540000	127940000	48660000	79285000	185410000	98278000	87134000	313320000	155720000	157600000	371950000	223440000	148510000	54408	4481	51259	329081;329082;329083;329084;329085;329086;329087;329088;329089	443597;443598;443599;443600;443601;443602;443603;443604;443605;443606;443607;443608;443609;443610	443601			14	
VGVKPVGSDPDFQPELSGAGSR	1	Unmodified	2198.0968	0.096760517	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.15	3.5	3	4	5					1		2	3	5	3	56.418	54.789	3	5.408E-08	48556	160511_QHF_FH_JSI11i_3	92.29	83.545			0.91148	0.97625	25.873	12	0	Median	1.4955	1.2569	10.853	2	0	Median	0.87338	1.0193	8.7566	3	0	Plateau	1.0681	1.0403	12.234	4	0	Median	0.59845	0.65678	5.9076	3	0	Median	2217500000	1149300000	1068200000	359410000	121040000	238360000	842360000	453460000	388900000	828810000	445330000	383480000	186900000	129470000	57424000	54409	328	51260	329090;329091;329092;329093;329094;329095;329096;329097;329098;329099;329100;329101;329102	443611;443612;443613;443614;443615;443616;443617;443618;443619;443620;443621;443622;443623;443624;443625;443626;443627;443628;443629;443630;443631;443632;443633;443634	443612			24	
VGVLAASMEAK	1	Unmodified	1074.5743	0.57433072	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8	6.13			3					1	1		1	3	1	45.085	42.596	2	0.00094779	37504	160511_QHF_FH_JSI11i_3	78.098	53.175			1.7317	1.6325	57.773	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2525	2.1803	35.426	3	3	Median	0.65794	0.67568	NaN	1	1	Median	473720000	185550000	288170000	0	0	0	0	0	0	337030000	106190000	230830000	136690000	79359000	57332000	54410	5293	51261	329103;329104;329105;329106;329107	443635;443636;443637;443638;443639	443635			5	
VGVNGFGR	0	Unmodified	804.42424	0.42423608	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.23	6.35	4	4	8				2	4	4	6	8	7	5	29.338	25.135	2	0.00018163	21828	160511_QHF_FH_JSI11i_3	122.15	98.359			0.91661	0.98623	16.395	25	0	Median	1.43	1.2449	9.9831	6	0	Median	0.85387	0.97386	9.4978	8	0	Median	1.0927	1.0453	10.738	6	0	Median	0.79723	0.88125	11.813	5	0	Median	67672000000	32129000000	35543000000	15236000000	5916900000	9319100000	20118000000	9543700000	10574000000	16812000000	7558600000	9253800000	15506000000	9110100000	6395700000	54411	812	51262	329108;329109;329110;329111;329112;329113;329114;329115;329116;329117;329118;329119;329120;329121;329122;329123;329124;329125;329126;329127;329128;329129;329130;329131;329132;329133	443640;443641;443642;443643;443644;443645;443646;443647;443648;443649;443650;443651;443652;443653;443654;443655;443656;443657;443658;443659;443660;443661;443662;443663;443664;443665;443666;443667;443668;443669;443670;443671;443672;443673;443674;443675;443676;443677;443678;443679	443641			40	
VGVSMFNRPH	0	Unmodified	1142.5655	0.56549736	5187	Q9P0S9	TMEM14C	Transmembrane protein 14C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	2	3	2	1	40.642	34.954	2;3	4.4709E-05	19358	160513_QHF_FH_JSI10Kac_6	98.582	98.582			1.1123	1.0995	13.122	7	0	Median	1.3046	1.0818	19.837	2	0	Median	0.95496	1.0857	21.734	2	0	Median	1.1828	1.1421	5.3762	2	0	Median	0.89767	0.9891	NaN	1	0	Median	430570000	214080000	216490000	150520000	71790000	78726000	199250000	103520000	95729000	72874000	34598000	38276000	7935100	4172300	3762800	54412	5187	51263	329134;329135;329136;329137;329138;329139;329140;329141	443680;443681;443682;443683;443684;443685;443686;443687;443688;443689	443688			10	
VGVSQQPEDSQQDLPGER	0	Unmodified	1967.9185	0.9184618	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	3									2	1			36.779	35.843	2	1.9925E-08	31684	160511_QHF_FH_JSI9i_1	128.9	115.7			1.2938	1.0572	10.742	3	3	Median	1.4026	1.1499	11.883	2	2	Median	0.8475	1.024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	171380000	80933000	90443000	90069000	38999000	51070000	81306000	41933000	39373000	0	0	0	0	0	0	54413	236	51264	329142;329143;329144	443690;443691;443692	443692			3	
VGVWNVPYISNIYLIK	1	Unmodified	1877.0451	0.045106284	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	95.823	87.415	2;3	4.339E-34	51708	160513_QHF_FH_JSI10Kac_6	135.02	113.57			1.102	1.0344	26.252	8	0	Median	1.3933	1.1945	6.8535	2	0	Median	0.72042	0.85272	5.0906	2	0	Median	1.5318	1.4716	12.521	2	0	Median	0.80357	0.84795	14.605	2	0	Median	2518600000	1221700000	1296900000	542510000	222090000	320420000	602480000	349550000	252930000	813360000	324450000	488910000	560200000	325600000	234600000	54414	2194	51265	329145;329146;329147;329148;329149;329150;329151;329152	443693;443694;443695;443696;443697;443698;443699;443700;443701;443702;443703;443704;443705;443706;443707;443708	443708			16	
VGVWNVPYISQAYVIR	0	Unmodified	1863.0043	0.004304102	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				90.044	81.329	2	0.0013008	45381	160513_QHF_FH_JSI9Kac_6	83.314	54.508			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14916000	0	14916000	14916000	0	14916000	0	0	0	0	0	0	0	0	0	54415	430	51266	329153	443709	443709			1	
VGVWNVPYMANVYLIK	1	Oxidation (M)	1880.9859	0.98587685	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									5	1		2	2	88.654	79.414	2;3	2.033E-23	42603	160513_QHF_FH_JSI12Kac_6	152.04	130.48			0.92303	0.81408	29.164	5	1	Median	0.95749	0.81408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96104	0.92044	2.3198	2	0	Median	0.50201	0.53146	13.997	2	0	Median	240060000	134030000	106040000	31039000	13718000	17321000	0	0	0	86801000	41991000	44810000	122220000	78318000	43907000	54416	140	51267	329154;329155;329156;329157;329158	443710;443711;443712;443713;443714	443713		63	5	
VGVWNVPYMANVYLIK	1	Unmodified	1864.991	0.99096222	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	2		1	1	94.139	84.96	2;3	0.0002314	46141	160513_QHF_FH_JSI12Kac_6	85.45	68.784			1.9708	1.7819	43.591	4	2	Median	2.2998	1.9676	9.9433	2	1	Median	NaN	NaN	NaN	0	0	Median	1.8002	1.7313	NaN	1	0	Median	0.76242	0.80123	NaN	1	1	Median	536680000	204700000	331970000	200970000	64887000	136080000	0	0	0	264850000	100310000	164540000	70857000	39504000	31352000	54417	140	51267	329159;329160;329161;329162	443715;443716;443717	443717			2	
VGWEQLLTTIAR	0	Unmodified	1385.7667	0.76669959	361;1021	O43707;P12814	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89		5	4						3	4	2	3	3	99.879	97.921	2	6.4435E-23	88149	160511_QHF_FH_JSI12i_3	177.57	152.8			0.79349	0.7953	39.161	10	0	Median	0.81251	0.67426	17.653	2	0	Median	0.5956	0.70414	10.394	2	0	Median	1.5861	1.5484	6.5009	3	0	Median	0.78968	0.828	9.1678	3	0	Median	9032400000	4489900000	4542500000	1004400000	471430000	532990000	1679100000	1056200000	622870000	3501300000	1322600000	2178700000	2847500000	1639700000	1207900000	54418	361;1021	51268	329163;329164;329165;329166;329167;329168;329169;329170;329171;329172;329173;329174	443718;443719;443720;443721;443722;443723;443724;443725;443726;443727;443728;443729;443730	443727			13	
VGWGAVYTLSEFTHR	0	Unmodified	1721.8526	0.85255449	4107	Q96HA8	WDYHV1	Protein N-terminal glutamine amidohydrolase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.233	76.64	3	0.00018013	42405	160513_QHF_FH_JSI10Kac_6	76.358	63.619			0.7737	0.92667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7737	0.92667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124840000	75917000	48926000	0	0	0	124840000	75917000	48926000	0	0	0	0	0	0	54419	4107	51269	329175	443731	443731			1	
VGWLVEWQDYKPVEYTAVSVLAGPR	1	Unmodified	2861.4752	0.4752156	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.229	89.508	3	4.9412E-09	51605	160513_QHF_FH_JSI10Kac_6	131.94	118.88			0.65912	0.76959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65912	0.76959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117430000	84376000	33057000	0	0	0	117430000	84376000	33057000	0	0	0	0	0	0	54420	4494	51270	329176	443732	443732			1	
VGWSTMQASLDLGTDK	1	Unmodified	1707.8138	0.81378572	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							1	2	3	2	78.241	77.666	2	6.3654E-15	67458	160511_QHF_FH_JSI12i_3	156.08	129.97			1.0518	1.1544	31.449	8	3	Median	1.512	1.2704	NaN	1	1	Median	0.94908	1.1544	11.112	2	2	Median	1.078	1.0637	39.809	3	0	Plateau	0.81953	0.85992	3.3664	2	0	Median	364690000	176580000	188110000	26676000	10995000	15682000	72698000	39193000	33505000	110680000	47240000	63436000	154640000	79149000	75492000	54421	3828	51271	329177;329178;329179;329180;329181;329182;329183;329184	443733;443734;443735;443736;443737;443738;443739;443740;443741;443742	443742			10	
VGWVLGPDHIMK	1	Unmodified	1350.7118	0.71182725	2762	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.152	65.858	3	0.015189	56809	160511_QHF_FH_JSI12i_3	40.516	33.622			0.63013	0.63927	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63013	0.63927	NaN	1	1	Median	101760000	55414000	46345000	0	0	0	0	0	0	0	0	0	101760000	55414000	46345000	54422	2762	51272	329185	443743	443743			1	
VGYKLHGR	1	Acetyl (K)	970.53485	0.53484916	4832	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS			16	0									1		1			22.514	15.578	3	0.027749	9141	160513_QHF_FH_JSI10Kac_6	33.263	20.226			0.95645	1.1228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95645	1.1228	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5840500	2957200	2883300	0	0	0	5840500	2957200	2883300	0	0	0	0	0	0	54423	4832	51273	329186	443744	443744			1	
VGYTPDWIFLLR	0	Unmodified	1478.7922	0.79218606	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.74		4	4						7	3	3	5	4	98.875	94.703	2;3	1.5182E-41	82647	160511_QHF_FH_JSI9i_3	200.6	174.16			1.1002	1.1584	23.367	15	3	Median	1.5639	1.3762	6.1122	3	0	Median	0.99375	1.1584	2.978	3	0	Plateau	1.1444	1.1214	7.073	5	2	Median	0.73095	0.76595	9.7299	4	1	Median	20441000000	9819200000	10622000000	3190600000	1251300000	1939300000	4493200000	2245800000	2247400000	8028000000	3522500000	4505500000	4729700000	2799600000	1930100000	54424	1807;2155	51274	329187;329188;329189;329190;329191;329192;329193;329194;329195;329196;329197;329198;329199;329200;329201	443745;443746;443747;443748;443749;443750;443751;443752;443753;443754;443755;443756;443757;443758;443759;443760	443751			16	
VGYYTIPSMDDLAK	1	Unmodified	1571.7541	0.75414558	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								1	2	2	2	79.481	78.944	2	6.3315E-07	70217	160511_QHF_FH_JSI9i_1	137.89	119.15			0.89399	0.99463	19.835	6	0	Median	1.4562	1.2075	NaN	1	0	Median	0.79277	0.95228	5.4422	2	0	Median	1.05	1.0448	6.2525	2	0	Median	0.65959	0.67607	NaN	1	0	Median	680690000	361630000	319060000	88268000	38186000	50081000	185930000	102110000	83826000	294530000	143880000	150660000	111950000	77457000	34495000	54425	1790	51275	329202;329203;329204;329205;329206;329207;329208	443761;443762;443763;443764;443765;443766;443767;443768;443769;443770;443771;443772;443773;443774;443775;443776	443771			16	
VGYYVNNEYLNPELR	0	Unmodified	1841.8948	0.89481323	5043	Q9NVP2	ASF1B	Histone chaperone ASF1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									2	1	1	69.416	68.669	2	5.8064E-22	60920	160511_QHF_FH_JSI10i_2	181.32	156.98			1.1232	1.2301	39.662	4	0	Median	NaN	NaN	NaN	0	0	Median	1.4613	1.7554	30.769	2	0	Median	1.0929	1.0714	NaN	1	0	Median	0.806	0.872	NaN	1	0	Median	167580000	73062000	94522000	0	0	0	74845000	29454000	45391000	48751000	23775000	24976000	43988000	19834000	24155000	54426	5043	51276	329209;329210;329211;329212	443777;443778;443779;443780;443781;443782;443783	443783			7	
VGYYVNNEYTETELRENPPVKPDFSK	2	Unmodified	3087.4825	0.48254541	5504	Q9Y294	ASF1A	Histone chaperone ASF1A	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			66.921	65.432	4	6.4191E-07	54772	160511_QHF_FH_JSI10i_3	57.278	54.955			0.89844	1.007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89844	1.007	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	103080000	42886000	60193000	0	0	0	103080000	42886000	60193000	0	0	0	0	0	0	54427	5504	51277	329213	443784;443785	443784			2	
VHAAADKHNSVEDSVTK	2	Acetyl (K)	1848.8966	0.89660415	428	O60563	CCNT1	Cyclin-T1	yes	yes	1	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	15.2	0.4								4	1	1	1	2	1	28.589	19.393	3;4	0.0094914	12089	160513_QHF_FH_JSI11Kac_5	42.913	34.938			1.537	1.6017	37.947	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85811	1.0098	NaN	1	0	Median	2.0004	1.9614	36.592	2	0	Median	1.5291	1.6943	NaN	1	0	Median	39323000	13604000	25719000	2039200	2039200	0	4186700	2324200	1862500	23562000	5727500	17834000	9535600	3513500	6022100	54428	428	51278	329214;329215;329216;329217;329218	443786;443787;443788	443787	215		3	
VHAALVYHK	1	Unmodified	1036.5818	0.58179936	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	0	By MS/MS		By MS/MS		12.8	5.63			1						3	3		1		23.006	16.302	2;3	0.037901	9812	160513_QHF_FH_JSI11Kac_6	37.191	29.811			1.1689	0.99237	22.932	4	1	Median	1.1559	0.96767	4.7663	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.67039	0.64644	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28546000	14523000	14024000	23139000	10727000	12413000	0	0	0	5407000	3795800	1611200	0	0	0	54429	2333	51279	329219;329220;329221;329222	443789;443790;443791;443792	443789			2	
VHAAVQPGSLDSESGIFACAFDQSESR	0	Unmodified	2864.3035	0.30353518	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.133	79.133	3	2.1795E-16	70666	160511_QHF_FH_JSI11i_3	99.219	96.711			1.132	1.0701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.132	1.0701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22818000	13008000	9810400	0	0	0	0	0	0	22818000	13008000	9810400	0	0	0	54430	350	51280	329223	443793;443794	443794			2	
VHACGVNPVETYIR	0	Unmodified	1613.7984	0.79841043	2266	Q08257	CRYZ	Quinone oxidoreductase	yes	yes	0	0	0	0		By MS/MS	By matching		2	0		2									1	1		48.003	47.262	3	0.057795	41652	160511_QHF_FH_JSI10i_2	35.054	14.958			0.96725	1.0719	18.043	2	0	Median	NaN	NaN	NaN	0	0	Median	0.77545	0.94351	NaN	1	0	Median	1.2065	1.2178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	125960000	63163000	62795000	0	0	0	54958000	32273000	22685000	71000000	30890000	40110000	0	0	0	54431	2266	51281	329224;329225	443795	443795			0	
VHAELADVLTEAVVDSILAIK	1	Unmodified	2205.2256	0.22564942	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.67	5.21		27	11						8	9	11	14	12	104.53	102.95	2;3;4	9.6555E-60	52796	160513_QHF_FH_JSI11Kac_6	194.49	179.8			0.93987	0.9637	15.119	42	13	Median	1.1447	0.96829	12.24	9	3	Median	0.73488	0.86472	14.997	11	5	Median	1.0402	1.0055	14.065	12	3	Median	0.93675	0.98656	12.434	10	2	Median	2967400000	1503400000	1463900000	632980000	271280000	361690000	1033800000	586610000	447170000	556340000	289940000	266400000	744270000	355590000	388680000	54432	1494	51282	329226;329227;329228;329229;329230;329231;329232;329233;329234;329235;329236;329237;329238;329239;329240;329241;329242;329243;329244;329245;329246;329247;329248;329249;329250;329251;329252;329253;329254;329255;329256;329257;329258;329259;329260;329261;329262;329263;329264;329265;329266;329267;329268;329269;329270;329271	443796;443797;443798;443799;443800;443801;443802;443803;443804;443805;443806;443807;443808;443809;443810;443811;443812;443813;443814;443815;443816;443817;443818;443819;443820;443821;443822;443823;443824;443825;443826;443827;443828;443829;443830;443831;443832;443833;443834;443835;443836;443837;443838;443839;443840;443841;443842;443843;443844;443845;443846;443847;443848;443849;443850;443851;443852;443853;443854;443855;443856;443857;443858;443859;443860;443861;443862;443863;443864;443865;443866;443867;443868;443869;443870;443871;443872;443873;443874;443875;443876;443877;443878;443879;443880;443881;443882;443883;443884;443885;443886;443887;443888;443889	443824			94	
VHAELADVLTEAVVDSILAIKK	2	Unmodified	2333.3206	0.32061244	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	104.41	104.41	3;4	1.4014E-18	91002	160511_QHF_FH_JSI12i_3	148.44	144.09			0.99444	1.0326	11.162	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.208	1.1569	4.1451	2	0	Median	0.99444	1.0326	8.0565	3	1	Plateau	141550000	73437000	68111000	0	0	0	0	0	0	20511000	8089900	12421000	121040000	65347000	55690000	54433	1494	51283	329272;329273;329274;329275;329276	443890;443891;443892;443893;443894;443895;443896;443897;443898	443894			9	
VHAIPLR	0	Unmodified	804.49701	0.49700709	2032;2030;1101	P62873;P62879;P16520	GNB1;GNB2;GNB3	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		20.245	19.334	2	0.014653	15603	160511_QHF_FH_JSI9i_3	65.897	39.789			0.67016	0.64853	47.517	4	1	Median	0.95651	0.77168	62.731	2	1	Median	0.72676	0.84929	NaN	1	0	Median	0.47179	0.43355	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	993090000	512940000	480150000	545470000	261570000	283890000	297100000	150310000	146790000	150520000	101060000	49466000	0	0	0	54434	2030;2032;1101	51284	329277;329278;329279;329280	443899;443900	443900			2	
VHAPGLNLSGVGGK	1	Unmodified	1304.7201	0.72008375	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.85	5.57		2	8						3	4	3	3	3	47.161	44.267	2;3	3.9249E-15	38694	160511_QHF_FH_JSI11i_3	134.99	125.04			0.98187	0.95679	9.7125	13	1	Median	1.2089	0.95962	11.093	4	1	Median	0.90503	1.0275	6.2698	3	0	Plateau	0.96383	0.90588	7.6035	3	0	Plateau	1.0515	1.0573	15.268	3	0	Median	5196800000	2460500000	2736300000	767470000	345300000	422170000	1056700000	521370000	535290000	1375500000	613740000	761780000	1997200000	980090000	1017100000	54435	2286	51285	329281;329282;329283;329284;329285;329286;329287;329288;329289;329290;329291;329292;329293	443901;443902;443903;443904;443905;443906;443907;443908;443909;443910;443911;443912;443913;443914;443915;443916;443917;443918;443919;443920;443921;443922;443923;443924	443901			23	
VHAQVQQFLK	1	Unmodified	1196.6666	0.66659162	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			4								1	1	2	36.671	36.23	2;3	1.6844E-05	30606	160511_QHF_FH_JSI12i_3	75.378	71.705			0.99036	1.0033	30.628	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77058	0.88241	NaN	1	0	Median	1.848	1.7326	NaN	1	0	Median	0.99036	1.0033	10.076	2	0	Median	382820000	167880000	214940000	0	0	0	46658000	22791000	23866000	105110000	43701000	61407000	231060000	101390000	129670000	54436	2302	51286	329294;329295;329296;329297	443925;443926;443927;443928;443929;443930	443927			6	
VHATSTYR	0	Unmodified	933.46683	0.46682918	4619	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	4.62	4.3			7						1	1	2	3	2	5.7145	4.3784	2;3	0.016908	3247	160511_QHF_FH_JSI9i_3	49.097	27.55			0.85514	0.94927	47.398	8	1	Median	1.3384	1.0798	NaN	1	0	Median	0.85514	0.98152	1.4765	2	0	Median	0.46885	0.42673	53.751	3	1	Median	1.0197	1.0414	25.198	2	0	Median	2204100000	1128900000	1075200000	84614000	40408000	44206000	651640000	363230000	288410000	65759000	42566000	23193000	1402100000	682700000	719400000	54437	4619	51287	329298;329299;329300;329301;329302;329303;329304;329305	443931;443932;443933	443932			3	
VHAVIGVLMDDTDPLVTVMK	1	Unmodified	2152.1272	0.12719771	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		2	1						2	2	1	1	1	96.93	94.006	3	4.363E-43	87812	160511_QHF_FH_JSI12i_3	198.07	176.47			0.58371	0.67588	45.817	5	3	Median	0.66927	0.57938	45.319	2	1	Median	0.58371	0.67588	NaN	1	1	Median	0.52882	0.53187	NaN	1	1	Median	1.3906	1.4057	NaN	1	0	Median	976910000	469460000	507450000	143590000	77043000	66548000	54891000	33815000	21076000	117630000	83017000	34617000	660790000	275590000	385210000	54438	1983	51288	329306;329307;329308;329309;329310	443934;443935;443936;443937;443938;443939;443940	443939			7	
VHAYIISSLK	1	Unmodified	1129.6495	0.64954457	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.23			5						9	4	2	4	4	50.44	44.292	2;3	0.00027345	24199	160513_QHF_FH_JSI11Kac_6	64.654	56.728			1.1651	1.1369	31.542	14	1	Median	0.99988	0.83466	63.746	4	1	Median	0.88425	1.0475	0.50204	2	0	Median	1.4201	1.3068	7.3127	4	0	Linear	1.1246	1.1683	5.262	4	0	Median	1256500000	548670000	707850000	294920000	139750000	155170000	169960000	82450000	87514000	358800000	148430000	210370000	432850000	178050000	254800000	54439	4727	51289	329311;329312;329313;329314;329315;329316;329317;329318;329319;329320;329321;329322;329323;329324	443941;443942;443943;443944;443945;443946;443947;443948;443949;443950;443951;443952	443943			10	
VHAYIISSLKK	2	Unmodified	1257.7445	0.74450759	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		12.3	5.87			2						5	3	1	3		43.604	37.299	3;4	0.0061702	19856	160513_QHF_FH_JSI9Kac_6	49.189	39.867			0.77372	0.65764	35.317	5	5	Median	1.0072	0.83386	33.574	2	2	Median	0.80094	0.91346	NaN	1	1	Median	0.51828	0.50581	20.782	2	2	Median	NaN	NaN	NaN	0	0	Median	79084000	44076000	35008000	35784000	18018000	17766000	23578000	13582000	9995600	19722000	12476000	7246400	0	0	0	54440	4727	51290	329325;329326;329327;329328;329329;329330;329331	443953;443954;443955;443956;443957;443958;443959	443958			7	
VHAYIISYLK	1	Unmodified	1205.6808	0.6808447	5163;4664	Q9NZN4;Q9H223	EHD2;EHD4	EH domain-containing protein 2;EH domain-containing protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.45			7						9	4	6	3	3	63.996	58.199	2;3	1.7116E-06	30670	160513_QHF_FH_JSI9Kac_6	89.047	74.381			1.0171	0.93189	16.962	15	0	Median	1.02	0.89324	7.3668	4	0	Linear	0.86234	0.98931	16.739	5	0	Median	1.0142	0.96928	8.8009	3	0	Plateau	1.0817	1.1359	8.0115	3	0	Median	4764800000	2182900000	2581900000	1231200000	543990000	687180000	1342400000	733910000	608510000	1536500000	599850000	936610000	654750000	305190000	349560000	54441	5163;4664	51291	329332;329333;329334;329335;329336;329337;329338;329339;329340;329341;329342;329343;329344;329345;329346;329347	443960;443961;443962;443963;443964;443965;443966;443967;443968;443969;443970;443971;443972;443973;443974;443975;443976;443977;443978;443979;443980;443981;443982;443983;443984;443985;443986;443987;443988;443989	443979			30	
VHCCFYFISPFGHGLK	1	Unmodified	1967.9175	0.9174797	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	78.79	70.099	3;4	6.8544E-24	36928	160513_QHF_FH_JSI12Kac_6	147.35	143.25			1.067	1.0302	15.414	7	0	Median	0.99613	0.83985	4.8483	2	0	Median	0.88891	1.0509	NaN	1	0	Median	1.0937	1.0299	0.043826	2	0	Median	1.1419	1.2035	9.4246	2	0	Median	2651500000	1269300000	1382200000	600050000	312180000	287870000	811290000	439450000	371840000	512690000	186710000	325970000	727490000	330980000	396510000	54442	2603	51292	329348;329349;329350;329351;329352;329353;329354	443990;443991;443992;443993;443994;443995;443996;443997;443998;443999;444000;444001;444002;444003	443998			14	
VHCCFYFISPFGHGLKPLDVAFMK	2	Unmodified	2869.3906	0.39063981	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			88.207	82.489	4;5	1.0867E-33	46618	160513_QHF_FH_JSI10Kac_6	154.11	146.83			0.85234	0.98232	3.9696	2	0	Median	NaN	NaN	NaN	0	0	Median	0.85234	0.98232	3.9696	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219720000	110220000	109500000	0	0	0	219720000	110220000	109500000	0	0	0	0	0	0	54443	2603	51293	329355;329356	444004;444005	444004			2	
VHCLNTLFSR	0	Unmodified	1245.6288	0.6288259	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			44.928	43.355	3	0.010893	36108	160511_QHF_FH_JSI10i_3	36.422	19.396			0.86074	0.82488	6.1026	2	0	Median	0.94591	0.79004	NaN	1	0	Median	0.78324	0.86125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43771000	18905000	24866000	14030000	5819100	8211200	29741000	13086000	16654000	0	0	0	0	0	0	54444	1271	51294	329357;329358	444006;444007;444008	444008			3	
VHDFDVK	1	Unmodified	858.42357	0.42356738	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			11.452	10.779	3	0.042141	8270	160511_QHF_FH_JSI9i_3	21.3	12.528			0.84623	0.8206	64.874	2	0	Median	0.63757	0.51869	NaN	1	0	Median	1.1232	1.2982	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178950000	88375000	90576000	80296000	40771000	39525000	98655000	47604000	51051000	0	0	0	0	0	0	54445	3839	51295	329359;329360	444009;444010	444010			2	
VHDPVTAKPK	2	Acetyl (K)	1132.6241	0.6240581	1047	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	26.367	17.032	3	0.0013189	10002	160513_QHF_FH_JSI10Kac_5	74.841	61.071			3.2812	3.0248	158.63	3	2	Plateau	1.001	0.8672	NaN	1	0	Median	13.818	16.443	NaN	1	1	Median	10.756	10.55	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32124000	6857700	25266000	11956000	6066200	5890100	9045400	333460	8712000	11122000	457980	10664000	0	0	0	54446	1047	51296	329361;329362;329363;329364	444011;444012;444013;444014;444015	444015	878		5	
VHDSQKPQDQDK	2	Unmodified	1423.6692	0.66917039	3505	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	4.5663	4.6588	3	0.023486	2136	160511_QHF_FH_JSI12i_3	51.774	36.235			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96425000	61240000	35185000	0	0	0	0	0	0	0	0	0	96425000	61240000	35185000	54447	3505	51297	329365	444016	444016			0	
VHEDSTSPAVAK	1	Unmodified	1239.6095	0.60953025	681	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	9.5232	8.8696	2;3	0.017638	6612	160511_QHF_FH_JSI11i_2	33.782	19.575			0.76529	0.82596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76529	0.82596	NaN	1	0	Median	22855000	13218000	9636800	0	0	0	0	0	0	0	0	0	22855000	13218000	9636800	54448	681	51298	329366;329367;329368	444017;444018;444019	444019			3	
VHELNEEIGK	1	Unmodified	1166.5932	0.5931519	5562;4910	Q9NQ29;Q9Y383	LUC7L;LUC7L2	Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	3	2	2	21.268	20.443	2;3	9.133E-05	16847	160511_QHF_FH_JSI12i_2	76.143	49.436			0.9756	0.99861	32.149	9	2	Median	1.0612	0.90441	3.9933	2	0	Median	0.91553	1.1194	61.389	3	2	Median	0.96989	0.98932	1.322	2	0	Median	1.0034	1.1136	14.144	2	0	Median	2055300000	1018900000	1036400000	353610000	162660000	190950000	571430000	276250000	295190000	734690000	379000000	355690000	395560000	200960000	194590000	54449	4910;5562	51299	329369;329370;329371;329372;329373;329374;329375;329376;329377	444020;444021;444022;444023;444024;444025;444026;444027;444028;444029;444030;444031	444020			12	
VHELQGNAPSDPDAVSAEEALK	1	Unmodified	2276.0921	0.092069069	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	2	4	51.735	51.072	3	6.3963E-10	42043	160511_QHF_FH_JSI11i_2	102.66	88.045			0.95779	0.95759	19.106	9	1	Median	1.1031	0.94903	NaN	1	0	Median	0.76706	0.91184	6.923	2	0	Median	1.0155	1.0098	14.428	2	0	Median	0.88273	1.0611	24.894	4	1	Linear	956550000	505860000	450690000	110310000	52322000	57983000	226040000	133570000	92476000	266130000	140160000	125970000	354070000	179810000	174260000	54450	648	51300	329378;329379;329380;329381;329382;329383;329384;329385;329386	444032;444033;444034;444035;444036;444037;444038;444039;444040;444041;444042;444043	444038			12	
VHEYNVLLETLSR	0	Unmodified	1571.8308	0.83075641	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			75.221	68.85	3	0.04125	37465	160513_QHF_FH_JSI10Kac_6	21.831	10.887			0.87339	1.0416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87339	1.0416	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	126000000	60525000	65474000	0	0	0	126000000	60525000	65474000	0	0	0	0	0	0	54451	1357	51301	329387	444044	444044			1	
VHFALLGTWDEK	1	Unmodified	1414.7245	0.72450043	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.41			7						5	2	5	2	3	78.239	74.02	2;3	1.0216E-12	39443	160513_QHF_FH_JSI10Kac_6	130.94	106.56			1.0424	1.048	39.92	10	2	Median	1.001	0.8635	NaN	1	0	Median	0.57991	0.69354	19.545	4	1	Median	1.4906	1.4375	14.612	2	0	Median	1.0856	1.1164	29.149	3	1	Plateau	689890000	371020000	318870000	85961000	43216000	42745000	198120000	130250000	67877000	149150000	72110000	77040000	256660000	125450000	131210000	54452	1201	51302	329388;329389;329390;329391;329392;329393;329394;329395;329396;329397;329398;329399	444045;444046;444047;444048;444049;444050;444051;444052;444053;444054;444055;444056;444057	444055			12	
VHFEESSK	1	Unmodified	961.45051	0.45051041	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	2	2	3	10.032	9.731	2;3	0.0040254	7634	160511_QHF_FH_JSI10i_2	57.96	48.746			1.0798	1.1288	35.669	8	4	Median	0.77097	0.66498	NaN	1	1	Median	0.95146	1.1796	28.58	2	1	Median	0.85513	0.85697	50.678	2	0	Median	1.514	1.579	21.216	3	2	Plateau	563820000	298690000	265130000	45055000	27694000	17360000	154410000	77531000	76879000	226150000	119500000	106650000	138200000	73964000	64238000	54453	1023	51303	329400;329401;329402;329403;329404;329405;329406;329407	444058;444059;444060;444061;444062;444063;444064	444062			7	
VHFFNSFFYDK	1	Unmodified	1449.6717	0.67173657	4724	Q9H4L4	SENP3	Sentrin-specific protease 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	77.786	72.327	2;3	8.4039E-05	38714	160513_QHF_FH_JSI10Kac_6	87.184	59.775			0.9703	1.0506	19.045	12	1	Median	1.2558	1.0689	35.489	3	1	Median	1.003	1.1529	11.274	3	0	Plateau	1.1891	1.1328	1.0062	3	0	Median	0.913	0.92623	8.4301	3	0	Plateau	718930000	351810000	367120000	179310000	80151000	99155000	225110000	118300000	106810000	170990000	73455000	97540000	143520000	79902000	63615000	54454	4724	51304	329408;329409;329410;329411;329412;329413;329414;329415;329416;329417;329418;329419;329420;329421	444065;444066;444067;444068;444069;444070;444071;444072;444073;444074;444075;444076;444077;444078;444079;444080;444081;444082;444083;444084;444085;444086	444084			22	
VHFILVEK	1	Unmodified	983.5804	0.58040237	5009	Q9NUP7	TRMT13	tRNA:m(4)X modification enzyme TRM13 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	48.38	48.139	3	0.0027035	41209	160511_QHF_FH_JSI12i_3	54.157	48.81			0.90165	0.93295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90165	0.93295	NaN	1	0	Median	23054000	12568000	10486000	0	0	0	0	0	0	0	0	0	23054000	12568000	10486000	54455	5009	51305	329422	444087;444088	444087			2	
VHFKNTR	1	Acetyl (K)	942.50355	0.50354903	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	17.658	10.032	3	0.00081559	6759	160513_QHF_FH_JSI10Kac_6	101.33	73.802			0.78987	0.89078	46.049	4	0	Median	1.0565	0.96376	NaN	1	0	Median	0.76457	0.92786	NaN	1	0	Median	0.37843	0.36606	NaN	1	0	Median	0.816	0.85518	NaN	1	0	Median	45621000	26371000	19249000	3487400	1900700	1586700	26567000	14666000	11902000	8542200	6154500	2387700	7023900	3650700	3373300	54456	1143	51306	329423;329424;329425;329426	444089;444090;444091	444091	1000		3	
VHFNLPEDDK	1	Unmodified	1212.5775	0.57750184	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	40.151	40.054	2	0.01957	34188	160511_QHF_FH_JSI12i_3	42.001	33.958			0.8639	0.82828	32.214	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7335	0.65955	NaN	1	0	Median	1.0175	1.0402	NaN	1	0	Median	84475000	49889000	34586000	0	0	0	0	0	0	33837000	20559000	13278000	50638000	29329000	21309000	54457	3306	51307	329427;329428	444092;444093	444093			2	
VHFTAER	0	Unmodified	858.4348	0.43480077	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	11.734	11.385	2	0.048713	8427	160511_QHF_FH_JSI12i_3	43.124	3.9052			1.0742	1.1313	20.333	4	0	Median	1.6338	1.3407	NaN	1	0	Median	0.93657	1.0947	NaN	1	0	Median	1.2321	1.1692	NaN	1	0	Median	0.80291	0.82699	NaN	1	0	Median	1086900000	566200000	520710000	117070000	44191000	72876000	246500000	128380000	118130000	412870000	208950000	203920000	310470000	184680000	125790000	54458	3213	51308	329429;329430;329431;329432	444094;444095	444095			2	
VHFTSNDLK	1	Unmodified	1059.5349	0.53490874	2080	P78310	CXADR	Coxsackievirus and adenovirus receptor	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		23.159	23.159	3	0.0068777	19622	160511_QHF_FH_JSI11i_3	47.96	41.958			1.2578	1.1693	91.805	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2578	1.1693	91.805	2	2	Median	NaN	NaN	NaN	0	0	Median	72836000	28397000	44440000	0	0	0	0	0	0	72836000	28397000	44440000	0	0	0	54459	2080	51309	329433;329434	444096;444097	444096			2	
VHGLEIEGR	0	Unmodified	1008.5352	0.53524309	2985	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		22.926	22.491	3	0.0069803	18964	160511_QHF_FH_JSI11i_3	33.378	13.616			1.0123	1.092	3.245	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87667	1.0672	NaN	1	0	Median	1.1688	1.1173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	78006000	36637000	41368000	0	0	0	35932000	17515000	18418000	42073000	19123000	22951000	0	0	0	54460	2985	51310	329435;329436;329437	444098;444099;444100	444098			3	
VHGLPTTSPSGMNMAELAQQVVK	1	Unmodified	2394.2036	0.20355055	1161	P19484	TFEB	Transcription factor EB	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.849	84.763	3	1.356E-05	73585	160511_QHF_FH_JSI12i_3	56.766	49.227			1.2436	1.1837	16.084	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1366	1.0564	NaN	1	0	Median	1.3606	1.3263	NaN	1	0	Median	87537000	40883000	46655000	0	0	0	0	0	0	43659000	25372000	18287000	43878000	15510000	28368000	54461	1161	51311	329438;329439	444101;444102	444102			2	
VHGPGIQSGTTNK	1	Unmodified	1294.663	0.6629628	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	10.422	10.242	2;3	6.4338E-05	7871	160511_QHF_FH_JSI11i_3	75.739	65.152			0.88826	0.98933	15.396	6	0	Median	NaN	NaN	NaN	0	0	Median	0.88826	1.0283	8.2748	2	0	Median	1.1479	1.0956	11.616	2	0	Median	0.81601	0.81475	3.0267	2	0	Median	458730000	241030000	217700000	0	0	0	110360000	60145000	50214000	183790000	91801000	91991000	164570000	89082000	75492000	54462	1192	51312	329440;329441;329442;329443;329444;329445	444103;444104;444105;444106;444107;444108;444109	444105			6	
VHGPGIQSGTTNKPNK	2	Unmodified	1633.8536	0.85361712	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			9						3	4	4	3	1	12.076	9.967	2;3;4	5.1658E-06	7730	160511_QHF_FH_JSI10i_3	98.694	81.292			0.75651	0.75828	22.331	12	0	Median	0.93735	0.66232	26.568	4	0	Linear	0.71006	0.81911	5.9512	4	0	Median	0.73417	0.72572	12.717	3	0	Plateau	1.1014	1.2204	NaN	1	0	Median	3831200000	1991500000	1839700000	1582800000	700620000	882210000	1414200000	804910000	609300000	829980000	484580000	345400000	4143600	1367100	2776500	54463	1192	51313	329446;329447;329448;329449;329450;329451;329452;329453;329454;329455;329456;329457	444110;444111;444112;444113;444114;444115;444116;444117;444118;444119;444120;444121;444122;444123;444124;444125;444126;444127;444128;444129;444130	444117			21	
VHGPGIQSGTTNKPNKFTVETR	2	Acetyl (K)	2409.2401	0.24007071	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	47.954	38.626	4	1.0609E-10	20189	160513_QHF_FH_JSI12Kac_6	97.457	85.329			0.66513	0.72691	54.314	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0182	1.2294	NaN	1	0	Median	0.42389	0.41498	NaN	1	0	Median	0.66513	0.72691	NaN	1	0	Median	55088000	32201000	22887000	0	0	0	20482000	10650000	9831900	26329000	16928000	9401100	8277100	4623200	3653800	54464	1192	51314	329458;329459;329460	444131;444132;444133;444134;444135;444136;444137	444135	1059;1060		7	
VHGPLSLLAPLPAAGK	1	Unmodified	1539.9137	0.91369818	3581	Q8NAF0	ZNF579	Zinc finger protein 579	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.933	77.667	3	0.00041968	67496	160511_QHF_FH_JSI12i_3	67.095	59.371			0.91674	0.91048	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91674	0.91048	NaN	1	1	Median	76496000	42071000	34425000	0	0	0	0	0	0	0	0	0	76496000	42071000	34425000	54465	3581	51315	329461	444138	444138			1	
VHGSLAR	0	Unmodified	738.41367	0.41367139	2029	P62861	FAU	40S ribosomal protein S30	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	5.1152	4.8883	2	0.027199	2591	160511_QHF_FH_JSI10i_3	53.71	27.601			0.94147	0.86324	13.014	4	0	Median	0.99675	0.82227	NaN	1	0	Median	0.9189	1.0326	NaN	1	0	Median	0.96459	0.90626	NaN	1	0	Median	0.76725	0.76434	NaN	1	0	Median	4661900000	2411600000	2250300000	68208000	33100000	35107000	2635100000	1297700000	1337400000	1045100000	555530000	489610000	913440000	525270000	388170000	54466	2029	51316	329462;329463;329464;329465	444139	444139			1	
VHGSSEAFWILVEDVDSEVILHHEYFLLK	1	Unmodified	3410.7187	0.71869335	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.341	91.62	4	3.5023E-06	53305	160513_QHF_FH_JSI10Kac_6	71.608	61.726			0.71243	0.84663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71243	0.84663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	207130000	121650000	85476000	0	0	0	207130000	121650000	85476000	0	0	0	0	0	0	54467	552	51317	329466	444140	444140			1	
VHGVSQLIK	1	Unmodified	979.58147	0.581465	5328	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			26.866	25.542	3	0.002445	21068	160511_QHF_FH_JSI10i_3	50.04	37.052			0.80809	0.80668	23.859	2	0	Median	0.80875	0.68145	NaN	1	0	Median	0.80743	0.95493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90658000	41938000	48719000	34493000	17792000	16701000	56165000	24147000	32018000	0	0	0	0	0	0	54468	5328	51318	329467;329468	444141;444142	444142			2	
VHHANLTK	1	Unmodified	918.50355	0.50354903	4740	Q9H6B4	CLMP	CXADR-like membrane protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	4.6487	4.7412	3	0.053423	2255	160511_QHF_FH_JSI12i_3	25.559	14.686			1.7661	1.8351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7661	1.8351	NaN	1	0	Median	518430000	176380000	342050000	0	0	0	0	0	0	0	0	0	518430000	176380000	342050000	54469	4740	51319	329469	444143	444143			1	
VHHEPQLSDK	1	Unmodified	1188.5887	0.58873523	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	7.2056	7.2544	3	3.8367E-05	4552	160511_QHF_FH_JSI12i_3	83.045	66.792			0.79818	0.78942	61.423	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53805	0.51131	NaN	1	0	Median	1.1841	1.2188	NaN	1	0	Median	435610000	215040000	220570000	0	0	0	0	0	0	126280000	69279000	57002000	309330000	145760000	163570000	54470	388	51320	329470;329471	444144;444145;444146	444146			3	
VHIDIGADGR	0	Unmodified	1051.5411	0.54105675	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		3	3							1		3	2	30.436	29.969	2;3	0.0042658	25465	160511_QHF_FH_JSI12i_2	31.462	26.996			0.79056	0.75944	27.26	6	0	Median	0.84258	0.71399	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67944	0.66058	33.439	3	0	Median	0.8042	0.86284	0.37512	2	0	Median	555920000	319740000	236180000	54744000	27663000	27081000	0	0	0	266690000	150260000	116430000	234480000	141810000	92667000	54471	1382	51321	329472;329473;329474;329475;329476;329477	444147;444148;444149;444150	444149			4	
VHIEFTEGEDK	1	Unmodified	1302.6092	0.6091959	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	1	3	3	36.079	35.73	2;3	0.0029393	31092	160511_QHF_FH_JSI11i_3	53.569	41.636			0.97712	1.0043	66.666	7	7	Median	0.6289	0.55378	NaN	1	1	Median	0.40765	0.49853	NaN	1	1	Median	2.4135	2.314	37.404	2	2	Median	0.97712	1.0043	39.329	3	3	Median	526710000	233180000	293540000	33121000	21286000	11835000	43898000	31954000	11944000	170160000	48716000	121440000	279540000	131220000	148310000	54472	2147	51322	329478;329479;329480;329481;329482;329483;329484;329485	444151;444152;444153;444154;444155;444156;444157;444158;444159	444153			9	
VHIEIGPDGR	0	Unmodified	1091.5724	0.57235688	1383;1775;1864	P31943;P55795;P52597	HNRNPH1;HNRNPH2;HNRNPF	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	6.31		11	5						7	7	3	6	7	35.781	32.334	2;3	2.546E-09	27267	160511_QHF_FH_JSI12i_3	128.36	71.08			0.85463	0.93232	25.264	22	0	Median	0.99924	0.86929	36.04	6	0	Median	0.78892	0.97027	4.9409	3	0	Median	0.99192	1.023	22.658	6	0	Median	0.8493	0.91821	25.049	7	0	Median	11543000000	5696700000	5846600000	1541000000	738310000	802660000	1430300000	795800000	634480000	3751700000	1839800000	1911900000	4820400000	2322800000	2497600000	54473	1383;1864;1775	51323	329486;329487;329488;329489;329490;329491;329492;329493;329494;329495;329496;329497;329498;329499;329500;329501;329502;329503;329504;329505;329506;329507;329508	444160;444161;444162;444163;444164;444165;444166;444167;444168;444169;444170;444171;444172;444173;444174;444175;444176;444177;444178;444179;444180;444181;444182;444183;444184;444185;444186;444187;444188;444189;444190;444191;444192;444193;444194	444192			35	
VHIGQVIMSIR	0	Unmodified	1251.7122	0.7121616	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.79			3						8	2	4	3	2	68.581	61.874	2;3	1.7247E-15	33789	160513_QHF_FH_JSI11Kac_6	128.81	102.77			1.0408	1.0169	13.088	11	0	Median	1.4051	1.2062	4.4391	2	0	Median	1.0469	1.227	11.197	4	0	Median	1.0538	0.99939	4.2498	3	0	Plateau	0.88599	0.93991	0.50199	2	0	Median	6216400000	2598000000	3618500000	819360000	308820000	510540000	4287400000	1820100000	2467300000	895020000	358440000	536580000	214590000	110580000	104000000	54474	1292	51324	329509;329510;329511;329512;329513;329514;329515;329516;329517;329518;329519	444195;444196;444197;444198;444199;444200;444201;444202;444203;444204;444205;444206;444207;444208;444209;444210;444211;444212;444213	444201			19	
VHIGQVIMSIR	0	Oxidation (M)	1267.7071	0.70707622	1292	P27635;Q96L21	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									16	4	4	4	4	62.318	53.057	2;3	5.115E-08	28228	160513_QHF_FH_JSI9Kac_6	113.69	104.68			1.0617	1.0302	16.95	16	0	Median	1.2423	1.0438	27.969	4	0	Median	0.97652	1.1622	16.671	4	0	Median	1.1656	1.1319	7.2569	4	0	Median	0.92758	0.98477	6.6518	4	0	Median	2326700000	1099300000	1227400000	740390000	315160000	425230000	1016400000	495850000	520590000	240320000	113920000	126400000	329530000	174370000	155160000	54475	1292	51324	329520;329521;329522;329523;329524;329525;329526;329527;329528;329529;329530;329531;329532;329533;329534;329535	444214;444215;444216;444217;444218;444219;444220;444221;444222;444223;444224;444225;444226;444227;444228;444229;444230;444231;444232;444233;444234;444235;444236;444237	444223		932	24	
VHILDTESFETTFGPK	1	Unmodified	1819.8992	0.89922991	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	76.016	75.594	2;3	5.8695E-06	67406	160511_QHF_FH_JSI11i_3	108.71	99.921			1.0735	1.0069	11.738	4	0	Median	1.2224	1.0721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96307	0.92908	2.4992	2	0	Median	1.1614	1.1783	NaN	1	0	Median	146940000	68889000	78050000	17875000	9615400	8259300	0	0	0	66010000	28223000	37787000	63053000	31050000	32003000	54476	2471	51325	329536;329537;329538;329539;329540;329541	444238;444239;444240;444241;444242;444243;444244	444238			7	
VHILGSFQNIK	1	Unmodified	1254.7085	0.70845643	4968	Q9NRX1	PNO1	RNA-binding protein PNO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.48			6						7	3	3	5	2	57.787	52.59	2;3	6.0099E-08	28751	160513_QHF_FH_JSI11Kac_6	112.36	91.58			1.1755	1.271	67.923	13	5	Median	3.0605	2.4906	65.382	3	1	Plateau	1.0642	1.271	24.855	3	1	Median	1.4706	1.3694	86.723	5	2	Median	2.1686	2.2829	87.518	2	1	Median	1983300000	371890000	1611400000	291790000	67449000	224340000	132030000	61910000	70117000	1314200000	197560000	1116600000	245330000	44975000	200350000	54477	4968	51326	329542;329543;329544;329545;329546;329547;329548;329549;329550;329551;329552;329553;329554	444245;444246;444247;444248;444249;444250;444251;444252;444253;444254;444255;444256;444257;444258	444251			14	
VHILYVGSMPLK	1	Unmodified	1355.7635	0.76352847	5572	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		2	6						8	3	4	5	4	70.902	66.003	2;3	3.5018E-16	35383	160513_QHF_FH_JSI11Kac_6	134.75	114.74			1.0376	1.0226	11.979	15	2	Median	1.1643	1.0005	9.4734	3	0	Median	0.8205	0.99195	17.854	4	1	Median	0.9655	0.91768	10.335	4	1	Median	1.0501	1.0784	2.6286	4	0	Median	3432300000	1805100000	1627200000	722020000	380320000	341700000	1136200000	625990000	510200000	971460000	505150000	466310000	602670000	293680000	308990000	54478	5572	51327	329555;329556;329557;329558;329559;329560;329561;329562;329563;329564;329565;329566;329567;329568;329569;329570	444259;444260;444261;444262;444263;444264;444265;444266;444267;444268;444269;444270;444271;444272;444273;444274;444275;444276;444277;444278;444279;444280;444281;444282	444264			23	
VHILYVGSMPLK	1	Oxidation (M)	1371.7584	0.75844309	5572	Q9Y3B2	EXOSC1	Exosome complex component CSL4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			3						9	2	3	4	3	60.206	53.074	2;3	0.00027954	28185	160513_QHF_FH_JSI9Kac_6	87.258	69.439			1.0318	0.98649	29.615	12	3	Median	1.2223	1.0362	14.562	2	0	Median	0.65949	0.78037	13.279	3	1	Median	1.0236	0.98432	42.781	4	2	Median	0.98587	1.0435	10.9	3	0	Plateau	751070000	385300000	365770000	218190000	81301000	136890000	172920000	111330000	61590000	177930000	89974000	87956000	182030000	102690000	79341000	54479	5572	51327	329571;329572;329573;329574;329575;329576;329577;329578;329579;329580;329581;329582	444283;444284;444285;444286;444287;444288;444289;444290;444291;444292;444293;444294;444295;444296;444297;444298;444299;444300	444291		2699	18	
VHIPGAIYLSIK	1	Unmodified	1309.7758	0.77580772	302	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	72.923	72.629	3	0.010376	62947	160511_QHF_FH_JSI12i_3	37.426	28.471			1.0494	1.1265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0494	1.1265	NaN	1	0	Median	11904000	5599600	6304800	0	0	0	0	0	0	0	0	0	11904000	5599600	6304800	54480	302	51328	329583;329584;329585	444301;444302;444303	444303			3	
VHIPNDDAQFDASHCDSDK	1	Unmodified	2169.9022	0.90215981	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.553	34.442	3	7.3753E-05	29208	160511_QHF_FH_JSI12i_3	67.418	62.801			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54481	2741	51329	329586	444304	444304			1	
VHIQSSQTVESSGLYTLQSILK	1	Unmodified	2417.2802	0.28020419	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	91.716	91.687	3	2.7613E-25	79392	160511_QHF_FH_JSI12i_3	187.43	173.56			0.89822	0.86117	5.5453	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96917	0.90181	NaN	1	0	Median	0.85155	0.8643	7.0334	2	2	Median	516030000	282970000	233050000	0	0	0	0	0	0	116510000	52932000	63582000	399510000	230040000	169470000	54482	1554	51330	329587;329588;329589	444305;444306;444307;444308	444308			4	
VHIVVTSK	1	Unmodified	881.53345	0.53345218	4305	Q99715	COL12A1	Collagen alpha-1(XII) chain	yes	yes	0	0	0	0	By matching	By MS/MS			16	0									2	1	1			25.533	17.571	3	0.054529	10467	160513_QHF_FH_JSI10Kac_6	34.253	19.584			0.9023	0.89457	26.551	2	0	Median	0.86136	0.74144	NaN	1	0	Median	0.94518	1.0793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9479400	4852100	4627300	4497800	1948800	2549000	4981600	2903300	2078300	0	0	0	0	0	0	54483	4305	51331	329590;329591	444309	444309			0	
VHLDIQVGEHANNYPEIAAK	1	Unmodified	2217.1178	0.11783031	3296	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	59.197	59.066	3	2.5355E-06	50741	160511_QHF_FH_JSI12i_3	83.213	67.959			0.99675	0.96024	7.625	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0892	1.0134	NaN	1	0	Median	0.91216	0.90984	NaN	1	0	Median	259110000	121850000	137260000	0	0	0	0	0	0	102160000	52316000	49845000	156950000	69535000	87416000	54484	3296	51332	329592;329593	444310;444311;444312;444313;444314	444313			5	
VHLDKAQQNNVEHK	2	Acetyl (K)	1700.8594	0.85943078	1979	P62081	RPS7	40S ribosomal protein S7	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		26.776	17.664	3;4	0.0002589	10643	160513_QHF_FH_JSI11Kac_6	73.887	61.91			0.21797	0.21215	32.71	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21797	0.21215	32.71	2	1	Median	NaN	NaN	NaN	0	0	Median	20209000	17499000	2710000	0	0	0	0	0	0	20209000	17499000	2710000	0	0	0	54485	1979	51333	329594;329595	444315;444316	444315	1997;2002		2	
VHLDLWVK	1	Unmodified	1008.5757	0.57565135	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	60.4	60.263	3	0.0041243	51904	160511_QHF_FH_JSI12i_3	48.561	40.636			1.6242	1.5503	22.058	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9581	1.812	NaN	1	1	Median	1.3473	1.3264	NaN	1	0	Median	41751000	16717000	25034000	0	0	0	0	0	0	14167000	4603900	9563300	27584000	12114000	15470000	54486	1117	51334	329596;329597;329598	444317;444318;444319	444318			3	
VHLFQYPCSK	1	Unmodified	1277.6227	0.62267789	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	42.713	42.565	2;3	0.0016689	36202	160511_QHF_FH_JSI12i_3	51.927	48.798			1.0939	1.1005	22.708	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94026	0.87389	NaN	1	0	Median	1.2041	1.2307	15.812	2	0	Median	270540000	110600000	159940000	0	0	0	0	0	0	100270000	47236000	53033000	170270000	63363000	106910000	54487	4848	51335	329599;329600;329601	444320;444321	444320			2	
VHLIVAGGYDER	0	Unmodified	1327.6884	0.68844927	4730	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		16	0									3	1	1	1		50.068	40.883	3	0.012391	22437	160513_QHF_FH_JSI10Kac_6	33.968	26.081			0.75631	0.89439	12.453	3	0	Plateau	1.1478	0.98582	NaN	1	0	Median	0.75549	0.89439	NaN	1	0	Median	1.1963	1.1452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	40360000	21022000	19338000	11363000	5588400	5774200	18383000	10574000	7808700	10614000	4859000	5755300	0	0	0	54488	4730	51336	329602;329603;329604	444322	444322			1	
VHLMNPMVPGLTGSK	1	Unmodified	1579.8215	0.82145405	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	64.569	64.424	3	0.00026915	55550	160511_QHF_FH_JSI12i_3	63.894	58.41			0.88667	0.85295	17.325	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81623	0.7546	NaN	1	0	Median	0.96318	0.96411	NaN	1	0	Median	190930000	86595000	104330000	0	0	0	0	0	0	68906000	37937000	30969000	122020000	48658000	73364000	54489	1823	51337	329605;329606;329607	444323;444324;444325	444325			3	
VHLNTFGFFK	1	Unmodified	1208.6342	0.63422886	2994	Q5VW38	GPR107	Protein GPR107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	70.972	70.266	2;3	1.9336E-05	59172	160511_QHF_FH_JSI10i_3	73.985	70.846			0.91049	0.93762	18.122	5	0	Median	1.1078	0.8818	NaN	1	0	Median	0.81845	0.95743	NaN	1	0	Median	1.1226	1.0441	NaN	1	0	Median	0.7486	0.78113	25.823	2	0	Median	332660000	172400000	160260000	49852000	21660000	28192000	43460000	21755000	21705000	67924000	35770000	32155000	171430000	93217000	78211000	54490	2994	51338	329608;329609;329610;329611;329612	444326;444327;444328;444329;444330;444331;444332;444333;444334;444335;444336;444337;444338;444339;444340;444341	444330			16	
VHLPNGSPIPAVLLANK	1	Unmodified	1739.0094	0.0093894799	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	80.658	80.138	3	8.981E-08	69415	160511_QHF_FH_JSI12i_3	95.57	87.393			0.78241	0.91192	10.9	3	3	Median	NaN	NaN	NaN	0	0	Median	0.78241	0.91192	NaN	1	1	Median	1.0442	0.96608	NaN	1	1	Median	0.77646	0.78237	NaN	1	1	Median	239040000	124890000	114150000	0	0	0	64210000	35024000	29186000	94144000	46651000	47493000	80691000	43216000	37474000	54491	2462	51339	329613;329614;329615;329616;329617;329618;329619	444342;444343;444344;444345;444346;444347;444348	444348			7	
VHLQLWDTAGQER	0	Unmodified	1551.7794	0.77938954	106	O00194	RAB27B	Ras-related protein Rab-27B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.778	55.231	3	0.037267	46173	160511_QHF_FH_JSI10i_3	24.558	15.959			1.2561	1.4795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2561	1.4795	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18609000	8064200	10545000	0	0	0	18609000	8064200	10545000	0	0	0	0	0	0	54492	106	51340	329620	444349	444349			1	
VHLQSEHSK	1	Unmodified	1063.5411	0.54105675	5011	Q9NUQ3	TXLNG	Gamma-taxilin	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	5.022	5.1175	2;3	0.00021722	2653	160511_QHF_FH_JSI12i_3	89.698	17.213			1.1115	1.1386	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1115	1.1386	NaN	1	1	Median	371000000	155470000	215520000	0	0	0	0	0	0	0	0	0	371000000	155470000	215520000	54493	5011	51341	329621;329622	444350;444351	444351			2	
VHLQTQQEVK	1	Unmodified	1208.6513	0.65133548	5262	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89		5	4						3	2	1	4	5	16.519	14.063	2;3	8.5604E-07	11007	160511_QHF_FH_JSI12i_3	94.692	86.781			0.81645	0.83967	25.648	11	3	Median	0.95277	0.83014	24.089	2	1	Median	1.0557	1.2807	NaN	1	0	Median	1.0457	1.0111	21.95	3	0	Median	0.814	0.81146	29.813	5	2	Median	906600000	489240000	417370000	41566000	18334000	23233000	55303000	32242000	23060000	175560000	99029000	76534000	634170000	339630000	294540000	54494	5262	51342	329623;329624;329625;329626;329627;329628;329629;329630;329631;329632;329633;329634	444352;444353;444354;444355;444356;444357;444358;444359;444360;444361;444362;444363;444364;444365;444366;444367	444366			16	
VHLSQKYK	2	Acetyl (K)	1043.5764	0.57637963	1556	P43243	MATR3	Matrin-3	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	26.409	17.999	3	0.00031655	10736	160513_QHF_FH_JSI10Kac_6	101.43	76.655			0.76175	0.75602	35.014	4	0	Median	0.87171	0.74216	NaN	1	0	Median	0.81385	0.97415	NaN	1	0	Median	0.43927	0.42625	NaN	1	0	Median	0.71299	0.77014	NaN	1	0	Median	144630000	87108000	57517000	18675000	10407000	8268500	32610000	17090000	15520000	68667000	46588000	22079000	24673000	13024000	11650000	54495	1556	51343	329635;329636;329637;329638	444368;444369;444370	444370	1573		3	
VHLSTGELGIIDSAFGQSGK	1	Unmodified	2015.0324	0.032369346	1896	P57772	EEFSEC	Selenocysteine-specific elongation factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			83.319	82.695	3	0.012217	72937	160511_QHF_FH_JSI9i_2	34.649	29.594			0.58982	0.61283	39.287	2	2	Median	0.54513	0.46418	NaN	1	1	Median	0.63818	0.80907	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80270000	49973000	30297000	39231000	27153000	12079000	41039000	22820000	18219000	0	0	0	0	0	0	54496	1896	51344	329639;329640	444371;444372	444371			2	
VHLTVVYFGK	1	Unmodified	1161.6546	0.65462995	3726	Q8TDX6	CSGALNACT1	Chondroitin sulfate N-acetylgalactosaminyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	67.609	58.567	3	8.5545E-05	30710	160513_QHF_FH_JSI12Kac_6	89.247	80.293			1.0195	0.97251	13.279	4	0	Median	1.0938	0.94074	NaN	1	0	Median	0.80089	0.94967	NaN	1	0	Median	1.3108	1.2485	NaN	1	0	Median	0.9503	0.99589	NaN	1	0	Median	204220000	99730000	104490000	44901000	19435000	25466000	62932000	32295000	30637000	47921000	24028000	23892000	48464000	23971000	24493000	54497	3726	51345	329641;329642;329643;329644	444373;444374;444375;444376;444377;444378	444376			6	
VHLVGIDIFTGK	1	Unmodified	1297.7394	0.73942221	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	5.74		13	13						8	10	10	6	8	80.23	77.246	2;3	3.9856E-25	37997	160513_QHF_FH_JSI12Kac_6	145.55	125.35			0.93967	0.98793	13.492	27	1	Median	1.2255	0.99446	12.917	7	0	Median	0.85635	1.026	17.873	7	1	Median	0.88465	0.86664	6.8386	6	0	Median	0.95374	0.98893	9.7821	7	0	Median	26817000000	12116000000	14701000000	4981800000	2049600000	2932200000	7883700000	4037000000	3846600000	5987100000	2650200000	3336900000	7964800000	3379300000	4585600000	54498	2060	51346	329645;329646;329647;329648;329649;329650;329651;329652;329653;329654;329655;329656;329657;329658;329659;329660;329661;329662;329663;329664;329665;329666;329667;329668;329669;329670;329671;329672;329673;329674;329675;329676;329677;329678	444379;444380;444381;444382;444383;444384;444385;444386;444387;444388;444389;444390;444391;444392;444393;444394;444395;444396;444397;444398;444399;444400;444401;444402;444403;444404;444405;444406;444407;444408;444409;444410;444411;444412;444413;444414;444415;444416;444417;444418;444419;444420;444421;444422;444423;444424;444425;444426;444427;444428;444429;444430;444431;444432;444433;444434;444435;444436;444437;444438;444439;444440;444441;444442;444443;444444;444445;444446;444447;444448;444449;444450;444451;444452;444453;444454;444455;444456;444457;444458;444459;444460;444461;444462;444463;444464;444465;444466;444467;444468;444469;444470;444471;444472;444473;444474;444475;444476;444477;444478;444479;444480;444481;444482;444483;444484;444485;444486;444487;444488;444489;444490;444491;444492;444493;444494;444495;444496;444497;444498;444499;444500;444501;444502;444503;444504;444505;444506;444507;444508	444502			129	
VHLVGIDIFTGKK	2	Unmodified	1425.8344	0.83438523	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	69.156	68.345	4	0.00023829	60054	160511_QHF_FH_JSI11i_3	75.479	70.325			1.0396	1.0143	42.813	4	4	Median	1.6244	1.3457	NaN	1	1	Median	0.45863	0.5184	NaN	1	1	Median	0.92055	0.85655	NaN	1	1	Median	1.174	1.2012	NaN	1	1	Median	175820000	92615000	83206000	35353000	13751000	21602000	39124000	26429000	12696000	31474000	15657000	15818000	69869000	36778000	33091000	54499	2060	51347	329679;329680;329681;329682	444509;444510;444511;444512;444513	444509			5	
VHMFEAHSDYIR	0	Unmodified	1503.6929	0.69288272	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	38.215	38.035	3;4	0.010962	32258	160511_QHF_FH_JSI12i_3	36.944	32.23			1.6273	1.6646	4.2309	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6273	1.6646	4.2309	2	0	Median	179750000	66436000	113310000	0	0	0	0	0	0	0	0	0	179750000	66436000	113310000	54500	1438	51348	329683;329684	444514;444515;444516	444514			2	
VHMTLELPWSADR	0	Unmodified	1553.766	0.76604767	16	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	77.698	77.564	3	0.031681	69334	160511_QHF_FH_JSI11i_3	18.102	12.925			1.135	1.1434	1.3195	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1949	1.1328	NaN	1	0	Median	1.0781	1.1541	NaN	1	0	Median	43358000	19887000	23471000	0	0	0	0	0	0	24204000	11234000	12970000	19154000	8653200	10501000	54501	16	51349	329685;329686	444517	444517			1	
VHMTWVQPR	0	Unmodified	1152.5862	0.58623281	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		36.287	35.551	3	0.0012245	29869	160511_QHF_FH_JSI10i_3	47.869	35.292			1.1545	1.0071	66.401	2	1	Median	1.9908	1.6107	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66951	0.62976	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	60725000	26615000	34110000	43750000	14777000	28974000	0	0	0	16975000	11838000	5136500	0	0	0	54502	5441	51350	329687;329688;329689	444518;444519;444520	444519			3	
VHMWEQTVK	1	Unmodified	1156.5699	0.56991404	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.83	5.01		2	3						1	1		1	4	29.249	28.76	2;3	0.0059518	25387	160511_QHF_FH_JSI9i_2	48.794	42.135			1.7434	1.9647	43.643	5	5	Median	1.7229	1.4293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.2912	3.9769	NaN	1	1	Median	2.2988	2.4817	33.645	3	3	Plateau	405960000	110190000	295770000	34815000	14654000	20161000	0	0	0	72841000	16732000	56109000	298310000	78807000	219500000	54503	2560	51351	329690;329691;329692;329693;329694;329695	444521;444522;444523;444524;444525;444526	444523			6	
VHNDAQSFDYDHDAFLGAEEAK	1	Unmodified	2478.0724	0.07239626	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		7	7								4	6	4	55.375	54.94	3;4	1.164E-15	46697	160511_QHF_FH_JSI12i_3	130.87	127.77			1.0654	1.0998	13.534	14	4	Median	NaN	NaN	NaN	0	0	Median	0.88935	1.0877	15.752	4	2	Median	1.1201	1.0736	14.888	6	1	Median	1.176	1.1932	7.9948	4	1	Median	1016400000	451290000	565120000	0	0	0	175610000	92817000	82793000	334000000	161380000	172620000	506800000	197090000	309710000	54504	388	51352	329696;329697;329698;329699;329700;329701;329702;329703;329704;329705;329706;329707;329708;329709	444527;444528;444529;444530;444531;444532;444533;444534;444535;444536;444537;444538;444539;444540;444541;444542;444543;444544;444545;444546	444542			20	
VHNLITDFLALMPMK	1	Unmodified	1741.9259	0.92591913	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	103.35	103.28	3	2.0714E-05	89630	160511_QHF_FH_JSI12i_3	109.84	91.474			0.99045	1.034	11.741	4	0	Median	1.022	0.89131	NaN	1	0	Median	0.95987	1.1289	NaN	1	0	Median	1.2065	1.1191	NaN	1	0	Median	0.9341	0.95532	NaN	1	0	Median	320590000	182350000	138240000	4594200	2421800	2172500	17569000	8982600	8586600	99270000	42785000	56485000	199160000	128160000	70994000	54505	3862	51353	329710;329711;329712;329713	444547;444548;444549;444550;444551;444552;444553;444554	444553			8	
VHNLITDFLALMPMK	1	Oxidation (M)	1757.9208	0.92083375	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	1	0		By MS/MS		By MS/MS	3	0			2								1		1	102.28	102.21	3	0.00020396	89023	160511_QHF_FH_JSI12i_3	68.168	58.886			0.81329	0.89834	17.401	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67447	0.79434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98068	1.016	NaN	1	0	Median	54584000	28934000	25651000	0	0	0	17189000	9774500	7414700	0	0	0	37395000	19159000	18236000	54506	3862	51353	329714;329715	444555;444556	444556		2315	2	
VHNQFSLVSDEDYLNPPVIDR	0	Unmodified	2456.1972	0.19720284	3196	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	82.219	82.011	3	0.0031891	71136	160511_QHF_FH_JSI12i_3	41.521	27.212			0.65982	0.72389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65982	0.72389	NaN	1	1	Median	71033000	45354000	25679000	0	0	0	0	0	0	0	0	0	71033000	45354000	25679000	54507	3196	51354	329716	444557	444557			1	
VHNSTFLWFIPFVQSLMDLK	1	Unmodified	2421.2555	0.25550977	3254	Q7Z333	SETX	Probable helicase senataxin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.49	95.77	3	0.0024956	56566	160513_QHF_FH_JSI10Kac_6	62.589	37.391			0.76314	0.87394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76314	0.87394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111900000	63722000	48174000	0	0	0	111900000	63722000	48174000	0	0	0	0	0	0	54508	3254	51355	329717	444558	444558			1	
VHPAVVIR	0	Unmodified	889.54977	0.54977095	2022	P62829	RPL23	60S ribosomal protein L23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.58	3.62		11	13						2	6	7	6	7	21.416	19.967	2;3	5.4216E-05	15808	160511_QHF_FH_JSI9i_3	105.39	63.888			0.90397	0.99921	60.899	23	4	Median	1.2381	1.05	56.886	5	0	Median	1.0058	0.82997	95.915	6	2	Plateau	1.0867	0.99921	25.007	5	0	Median	0.90397	0.96225	48.31	7	2	Median	20622000000	9904700000	10718000000	4327400000	1865700000	2461700000	4278800000	2317400000	1961500000	4325600000	1898200000	2427400000	7690500000	3823500000	3867000000	54509	2022	51356	329718;329719;329720;329721;329722;329723;329724;329725;329726;329727;329728;329729;329730;329731;329732;329733;329734;329735;329736;329737;329738;329739;329740;329741;329742;329743	444559;444560;444561;444562;444563;444564;444565;444566;444567;444568;444569;444570;444571;444572;444573;444574;444575;444576;444577;444578;444579;444580;444581;444582;444583;444584;444585;444586;444587;444588	444572			30	
VHPEIINENGNPSYK	1	Unmodified	1709.8373	0.83729835	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.12		10	4					1	2	4	3	6	4	35.873	33.598	2;3	1.3352E-10	29465	160511_QHF_FH_JSI10i_2	124.09	111.93			1.0717	1.0249	22.039	17	5	Median	1.0195	0.8644	11.444	4	2	Median	0.88086	1.0825	26.085	3	2	Median	0.98698	0.98211	19.782	6	1	Median	1.2517	1.3936	13.409	4	0	Median	1888300000	879640000	1008600000	284450000	124780000	159670000	436890000	240250000	196640000	588000000	262470000	325530000	578940000	252140000	326800000	54510	741	51357	329744;329745;329746;329747;329748;329749;329750;329751;329752;329753;329754;329755;329756;329757;329758;329759;329760	444589;444590;444591;444592;444593;444594;444595;444596;444597;444598;444599;444600;444601;444602;444603;444604;444605;444606;444607;444608;444609;444610;444611;444612;444613;444614	444607			26	
VHPEPGTWDSFLEK	1	Unmodified	1640.7835	0.78347187	1699	P50225	SULT1A1	Sulfotransferase 1A1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	65.988	65.323	3	0.0016577	56128	160511_QHF_FH_JSI12i_3	51.939	46.565			1.0254	1.025	26.762	5	1	Median	1.0254	0.88181	NaN	1	0	Median	0.84612	1.025	NaN	1	0	Median	1.6554	1.58	NaN	1	1	Median	1.0102	1.0846	31.851	2	0	Median	308910000	146300000	162600000	34236000	20791000	13445000	73288000	39574000	33714000	55882000	21381000	34501000	145500000	64557000	80944000	54511	1699	51358	329761;329762;329763;329764;329765	444615;444616;444617;444618	444618			4	
VHPNEEDPR	0	Unmodified	1091.4996	0.49958587	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		6.33	5.44		1	1				1				1	2		26.383	23.122	2	0.015365	19898	160511_QHF_FH_JSI11i_3	54.549	27.947			0.030553	0.031183	50.93	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.064333	0.076704	NaN	1	1	Median	0.032838	0.031766	2.6191	2	2	Median	NaN	NaN	NaN	0	0	Median	389770000	373650000	16117000	0	0	0	21613000	20180000	1432400	368150000	353470000	14685000	0	0	0	54512	3430	51359	329766;329767;329768	444619;444620;444621	444619			3	
VHPVSTMIK	1	Oxidation (M)	1026.5532	0.55320134	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	4.94		13	27					1	7	12	12	10	14	19.624	17.778	2;3	0.0010492	8225	160513_QHF_FH_JSI11Kac_6	64.654	49.393			0.92986	0.92026	87.508	46	3	Median	1.2132	1.0215	66.752	12	1	Median	0.75039	0.90186	81.693	12	0	Median	0.93388	0.91496	99.476	9	0	Median	0.72195	0.7297	100.06	13	2	Median	16513000000	8631400000	7882000000	1890800000	937730000	953050000	3286000000	1710800000	1575200000	4149700000	1989600000	2160200000	7186900000	3993300000	3193500000	54513	761	51360	329769;329770;329771;329772;329773;329774;329775;329776;329777;329778;329779;329780;329781;329782;329783;329784;329785;329786;329787;329788;329789;329790;329791;329792;329793;329794;329795;329796;329797;329798;329799;329800;329801;329802;329803;329804;329805;329806;329807;329808;329809;329810;329811;329812;329813;329814;329815;329816	444622;444623;444624;444625;444626;444627;444628;444629;444630;444631;444632;444633;444634;444635;444636;444637;444638;444639;444640;444641;444642;444643;444644;444645;444646;444647;444648;444649;444650;444651;444652;444653;444654;444655;444656;444657;444658;444659;444660;444661;444662;444663;444664;444665;444666;444667;444668;444669;444670	444645		267	47	
VHPVSTMIK	1	Unmodified	1010.5583	0.55828672	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	5.34		11	24					1	8	13	10	12	9	24.37	21.964	2;3	5.6184E-06	18217	160511_QHF_FH_JSI11i_3	88.136	65.396			0.98466	0.96144	111.88	43	11	Median	1.15	0.96144	92.649	13	6	Median	1.0566	1.2248	113.38	10	2	Median	0.51787	0.53231	113.29	12	3	Median	0.81033	0.83409	121.54	8	0	Median	65546000000	34418000000	31128000000	13021000000	5288300000	7732700000	12866000000	5924400000	6941500000	23007000000	13809000000	9197700000	16652000000	9396000000	7256500000	54514	761	51360	329817;329818;329819;329820;329821;329822;329823;329824;329825;329826;329827;329828;329829;329830;329831;329832;329833;329834;329835;329836;329837;329838;329839;329840;329841;329842;329843;329844;329845;329846;329847;329848;329849;329850;329851;329852;329853;329854;329855;329856;329857;329858;329859;329860	444671;444672;444673;444674;444675;444676;444677;444678;444679;444680;444681;444682;444683;444684;444685;444686;444687;444688;444689;444690;444691;444692;444693;444694;444695;444696;444697;444698;444699;444700;444701;444702;444703;444704;444705;444706;444707;444708;444709;444710;444711;444712;444713;444714;444715;444716;444717;444718;444719;444720;444721;444722;444723;444724	444673			54	
VHPVSTMIKGLYGIK	2	Acetyl (K);Oxidation (M)	1699.9331	0.93311299	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		70.141	60.628	3	0.00034485	32835	160513_QHF_FH_JSI11Kac_6	77.42	58.825			0.31364	0.31203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31364	0.31203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37649000	29337000	8311700	0	0	0	0	0	0	37649000	29337000	8311700	0	0	0	54515	761	51361	329861	444725	444725	371	267	1	
VHPVSTMIKGLYGIK	2	Acetyl (K)	1683.9382	0.93819837	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.652	70.289	3	4.9764E-05	38300	160513_QHF_FH_JSI11Kac_6	94.551	74.445			0.73287	0.70067	41.536	4	0	Median	0.89544	0.77858	NaN	1	0	Median	0.96479	1.1494	NaN	1	0	Median	0.45277	0.42482	NaN	1	0	Median	0.59981	0.63055	NaN	1	0	Median	356440000	212700000	143740000	34932000	17078000	17855000	76991000	39698000	37293000	174820000	105130000	69692000	69693000	50798000	18895000	54516	761	51361	329862;329863;329864;329865	444726;444727;444728;444729;444730;444731;444732	444726	371		7	
VHQLDVAIPLHLK	1	Unmodified	1481.8718	0.87183337	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	64.96	64.815	4	0.00028878	57681	160511_QHF_FH_JSI11i_3	63.76	61.198			1.3647	1.3349	13.629	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2739	1.2123	NaN	1	0	Median	1.462	1.47	NaN	1	0	Median	67023000	34703000	32320000	0	0	0	0	0	0	30780000	16229000	14551000	36243000	18474000	17769000	54517	4829	51362	329866;329867	444733;444734;444735	444734			3	
VHQLLVSSLTK	1	Unmodified	1223.7238	0.72377215	3374	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			44.532	42.986	3	0.037547	35795	160511_QHF_FH_JSI10i_3	29.805	21.076			0.53105	0.6275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53105	0.6275	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15586000	9891500	5694000	0	0	0	15586000	9891500	5694000	0	0	0	0	0	0	54518	3374	51363	329868	444736	444736			1	
VHQLYETIQR	0	Unmodified	1285.6779	0.67788459	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	3	1	5	3	29.084	27.259	2;3	2.134E-05	22619	160511_QHF_FH_JSI12i_3	85.355	75.35			0.79001	0.73414	57.137	12	5	Median	0.39253	0.34105	40.557	3	1	Plateau	0.38293	0.45944	NaN	1	0	Median	0.90212	0.88144	46.637	5	2	Median	1.28	1.317	58.092	3	2	Median	1498600000	718140000	780500000	206470000	144760000	61709000	74530000	40020000	34510000	600560000	297680000	302880000	617080000	235670000	381400000	54519	2441	51364	329869;329870;329871;329872;329873;329874;329875;329876;329877;329878;329879;329880	444737;444738;444739;444740;444741;444742;444743;444744;444745;444746;444747;444748	444745			11	
VHQVLYR	0	Unmodified	913.51339	0.51338544	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	12.385	12.004	3	0.0017208	8971	160511_QHF_FH_JSI12i_3	74.439	48.545			1.0954	1.1345	5.9644	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95362	1.0877	NaN	1	0	Median	1.2583	1.1834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	270910000	131460000	139440000	0	0	0	127890000	61985000	65908000	143020000	69480000	73535000	0	0	0	54520	2760	51365	329881;329882;329883	444749;444750	444750			2	
VHSDFTAAATR	0	Unmodified	1174.5731	0.57308516	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.7	4.12		6	3						1	3	1	3	3	17.544	16.424	2;3	0.0021236	13371	160511_QHF_FH_JSI11i_3	37.613	33.94			1.1017	1.038	11.191	10	0	Median	1.1654	1.0303	10.663	3	0	Plateau	0.78856	0.97443	NaN	1	0	Median	0.95769	0.94228	10.796	3	0	Median	1.1037	1.1083	14.963	3	0	Plateau	616470000	314130000	302350000	83221000	44149000	39072000	70348000	38529000	31820000	184280000	96611000	87672000	278620000	134840000	143780000	54521	485	51366	329884;329885;329886;329887;329888;329889;329890;329891;329892;329893	444751;444752;444753;444754;444755;444756;444757;444758	444751			7	
VHSEVASLQEK	1	Unmodified	1225.6303	0.63026569	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	4	3	16.157	15.673	2;3	1.402E-05	13174	160511_QHF_FH_JSI10i_2	70.321	61.921			1.1177	1.1937	23.58	9	0	Median	1.3566	1.1567	18.355	2	0	Median	1.0515	1.2645	8.1497	2	0	Median	0.87886	0.87974	31.736	3	0	Plateau	0.97519	1.042	39.6	2	0	Median	508290000	254540000	253750000	108190000	48999000	59195000	142150000	67657000	74496000	161220000	92584000	68632000	96726000	45297000	51429000	54522	5552	51367	329894;329895;329896;329897;329898;329899;329900;329901;329902;329903;329904	444759;444760;444761;444762;444763;444764;444765;444766;444767;444768;444769;444770	444767			11	
VHSFPTLK	1	Unmodified	927.5178	0.51780212	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.04	5.93		8	9						6	5	6	6	6	30.935	27.939	2;3	5.8893E-05	22654	160511_QHF_FH_JSI12i_3	116.37	92.216			1.0334	1.0177	45.062	23	1	Median	1.1105	0.94897	57.47	5	0	Median	0.72172	0.86794	54.883	6	1	Median	1.0812	1.0455	22.668	6	0	Median	1.0118	1.0803	29.477	6	0	Median	18134000000	8431600000	9702700000	2930800000	1057300000	1873500000	3804600000	2119600000	1685000000	4354000000	2033300000	2320700000	7045000000	3221400000	3823500000	54523	867	51368	329905;329906;329907;329908;329909;329910;329911;329912;329913;329914;329915;329916;329917;329918;329919;329920;329921;329922;329923;329924;329925;329926;329927	444771;444772;444773;444774;444775;444776;444777;444778;444779;444780;444781;444782;444783;444784;444785;444786;444787;444788;444789;444790;444791;444792;444793;444794;444795;444796;444797;444798;444799;444800;444801;444802;444803;444804;444805;444806;444807;444808;444809	444803			39	
VHSFPTLKFFPASADR	1	Acetyl (K)	1860.9523	0.95226853	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		82.195	72.881	3	1.2271E-07	40151	160513_QHF_FH_JSI11Kac_6	114.27	103			0.30137	0.28579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30137	0.28579	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	229840000	174160000	55684000	0	0	0	0	0	0	229840000	174160000	55684000	0	0	0	54524	867	51369	329928	444810	444810	572		1	
VHSPPASLVPR	0	Unmodified	1158.6509	0.65094155	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			29.765	28.422	3	0.016752	23545	160511_QHF_FH_JSI10i_3	30.205	17.249			0.93456	1.0758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93456	1.0758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51717000	28641000	23075000	0	0	0	51717000	28641000	23075000	0	0	0	0	0	0	54525	4416	51370	329929	444811	444811			1	
VHSPSGALEECYVTEIDQDK	1	Unmodified	2276.0267	0.026691621	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.415	57.819	3	1.783E-11	51142	160511_QHF_FH_JSI11i_3	131.67	119.77			0.93691	1.0023	23.653	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0225	1.2428	NaN	1	0	Median	0.75118	0.74122	11.312	2	0	Median	0.99017	1.034	4.4066	2	1	Median	405580000	232790000	172790000	0	0	0	72985000	45481000	27503000	181660000	116490000	65170000	150940000	70817000	80120000	54526	1192	51371	329930;329931;329932;329933;329934;329935	444812;444813;444814;444815;444816;444817	444813			6	
VHSPSGAVEECHVSELEPDK	1	Unmodified	2205.0008	0.0008112211	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	35.346	35.283	3	3.3902E-05	29898	160511_QHF_FH_JSI12i_3	58.997	55.029			0.82576	0.79231	22.698	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7321	0.67483	NaN	1	0	Median	0.93141	0.93025	NaN	1	0	Median	80056000	41909000	38147000	0	0	0	0	0	0	46978000	26890000	20088000	33078000	15019000	18059000	54527	512	51372	329936;329937	444818;444819;444820	444820			3	
VHSYLER	0	Unmodified	902.46102	0.46101552	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	11.086	11.131	3	0.021738	8334	160511_QHF_FH_JSI12i_3	32.355	21.482			1.0891	1.0706	21.374	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3373	1.2453	NaN	1	0	Median	0.88695	0.92043	NaN	1	0	Median	215690000	102910000	112780000	0	0	0	0	0	0	100730000	41394000	59338000	114960000	61512000	53446000	54528	412	51373	329938;329939	444821	444821			1	
VHTVEDYQAIVDAEWNILYDK	1	Unmodified	2520.2173	0.21726958	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.14	6.81		3	1						3	2	1	1	3	97.033	93.56	3	7.6916E-22	46253	160513_QHF_FH_JSI9Kac_6	139.7	127.02			1.0891	1.1184	7.7019	6	0	Median	1.2301	1.0561	8.0291	2	0	Median	0.94944	1.1226	NaN	1	0	Median	1.0919	1.1189	NaN	1	0	Median	0.99967	1.0798	14.001	2	0	Median	1459300000	678010000	781240000	254610000	105740000	148870000	222990000	85309000	137680000	478300000	229340000	248970000	503360000	257630000	245720000	54529	4321	51374	329940;329941;329942;329943;329944;329945;329946	444822;444823;444824;444825;444826;444827;444828	444824			7	
VHVGDEDFVHLR	0	Unmodified	1421.7052	0.70516197	804	P04080	CSTB	Cystatin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.41		29	13						10	12	10	13	17	50.633	48.311	2;3;4	2.7683E-08	40110	160511_QHF_FH_JSI12i_3	135.86	127.95			1.0706	1.1233	18.948	50	13	Plateau	1.1097	0.94316	15.104	11	3	Median	0.83468	1.031	23.413	9	3	Median	1.136	1.1304	10.874	13	2	Median	1.0247	1.0599	21.6	17	5	Median	7768700000	3544200000	4224400000	604500000	287460000	317040000	610770000	288720000	322050000	2708700000	1219300000	1489400000	3844700000	1748800000	2095900000	54530	804	51375	329947;329948;329949;329950;329951;329952;329953;329954;329955;329956;329957;329958;329959;329960;329961;329962;329963;329964;329965;329966;329967;329968;329969;329970;329971;329972;329973;329974;329975;329976;329977;329978;329979;329980;329981;329982;329983;329984;329985;329986;329987;329988;329989;329990;329991;329992;329993;329994;329995;329996;329997;329998	444829;444830;444831;444832;444833;444834;444835;444836;444837;444838;444839;444840;444841;444842;444843;444844;444845;444846;444847;444848;444849;444850;444851;444852;444853;444854;444855;444856;444857;444858;444859;444860;444861;444862;444863;444864;444865;444866;444867;444868;444869;444870;444871;444872;444873;444874;444875;444876;444877;444878;444879;444880;444881;444882;444883;444884;444885;444886;444887;444888;444889;444890;444891;444892;444893;444894;444895;444896;444897;444898;444899;444900;444901;444902;444903;444904;444905;444906;444907;444908	444894			78	
VHVIFNYK	1	Unmodified	1018.56	0.56000128	1297	P27797	CALR	Calreticulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.65	6.56		6	16					2	16	12	9	11	8	45.195	40.713	2;3	1.8019E-07	21202	160513_QHF_FH_JSI9Kac_6	122.78	113.56			1.0019	0.95026	37.518	36	6	Median	1.0512	0.92887	38.635	11	2	Median	0.77037	0.86359	23.388	9	1	Median	1.1142	1.057	47.173	9	2	Median	0.97474	1.0064	38.123	7	1	Median	69579000000	30305000000	39274000000	17376000000	7308700000	10068000000	17436000000	7562700000	9873000000	15645000000	7232000000	8413000000	19122000000	8201600000	10920000000	54531	1297	51376	329999;330000;330001;330002;330003;330004;330005;330006;330007;330008;330009;330010;330011;330012;330013;330014;330015;330016;330017;330018;330019;330020;330021;330022;330023;330024;330025;330026;330027;330028;330029;330030;330031;330032;330033;330034;330035;330036;330037;330038	444909;444910;444911;444912;444913;444914;444915;444916;444917;444918;444919;444920;444921;444922;444923;444924;444925;444926;444927;444928;444929;444930;444931;444932;444933;444934;444935;444936;444937;444938;444939;444940;444941;444942;444943;444944;444945;444946;444947;444948;444949;444950;444951;444952;444953;444954;444955;444956;444957;444958;444959;444960;444961;444962;444963;444964;444965;444966;444967;444968;444969;444970;444971;444972;444973;444974;444975;444976;444977;444978;444979;444980;444981;444982;444983;444984;444985;444986;444987;444988;444989;444990;444991;444992;444993;444994;444995;444996;444997;444998;444999;445000;445001;445002;445003;445004;445005;445006;445007;445008;445009;445010;445011;445012;445013;445014;445015;445016;445017;445018;445019;445020;445021;445022;445023;445024;445025;445026;445027;445028;445029;445030;445031;445032;445033	444981			123	
VHVIFNYKGK	2	Acetyl (K)	1245.687	0.68699271	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	55.677	46.322	2;3	1.8159E-12	25126	160513_QHF_FH_JSI11Kac_6	149.72	132.51			0.28299	0.27928	86.322	7	1	Median	0.15661	0.13087	NaN	1	1	Median	1.0561	1.2497	4.5987	2	0	Median	0.2975	0.28095	7.7715	2	0	Median	0.24103	0.2583	11.047	2	0	Median	707620000	511360000	196270000	6969700	6014500	955230	140390000	68066000	72326000	512710000	398130000	114590000	47547000	39150000	8397100	54532	1297	51377	330039;330040;330041;330042;330043;330044;330045;330046	445034;445035;445036;445037;445038;445039;445040;445041;445042;445043;445044;445045;445046;445047	445035	1227		14	
VHVLWWNESADSR	0	Unmodified	1597.7637	0.76373948	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	71.484	62.933	2;3	1.685E-08	34368	160513_QHF_FH_JSI10Kac_6	89.959	83.796			1.1936	1.1964	10.85	5	1	Median	1.2951	1.1023	NaN	1	1	Median	0.90364	1.0769	15.371	2	0	Median	1.2112	1.1964	NaN	1	0	Median	1.1936	1.2809	NaN	1	0	Median	244100000	119820000	124280000	26537000	10634000	15903000	157150000	80374000	76775000	33656000	12801000	20855000	26762000	16012000	10750000	54533	5278	51378	330047;330048;330049;330050;330051	445048;445049;445050;445051;445052;445053;445054	445052			6	
VHVQFFDDSPTR	0	Unmodified	1446.6892	0.68917755	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							1	2	4	2	50.623	50.116	2;3	6.8497E-08	42823	160511_QHF_FH_JSI12i_3	103.46	94.748			0.96872	0.93334	13.206	9	2	Median	1.1291	0.97885	NaN	1	0	Median	0.86054	1.0207	19.882	2	0	Median	0.99216	0.94394	8.1413	4	2	Median	0.79172	0.79193	0.50341	2	0	Median	1151000000	590680000	560340000	78936000	41832000	37104000	169520000	86307000	83211000	586350000	267560000	318780000	316220000	194980000	121240000	54534	1778	51379	330052;330053;330054;330055;330056;330057;330058;330059;330060	445055;445056;445057;445058;445059;445060;445061;445062;445063;445064	445062			10	
VHVSEEGTEPEAMLQVLGPK	1	Unmodified	2149.0725	0.072519601	848	P06396	GSN	Gelsolin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		76.073	75.44	3	0.00038859	66243	160511_QHF_FH_JSI11i_2	54.964	46.173		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54535	848	51380	330061	445065	445065			1	
VHYENNSPFLTITSMTR	0	Unmodified	2008.9677	0.9676606	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	3	3	1	1	75.119	70.174	2;3	5.1787E-24	36475	160513_QHF_FH_JSI9Kac_6	150.01	128.74			1.144	1.094	11.01	8	0	Median	1.3411	1.1456	5.2033	3	0	Plateau	0.90125	1.048	8.9721	3	0	Plateau	1.0613	0.99871	NaN	1	0	Median	1.2332	1.3137	NaN	1	0	Median	1334800000	689740000	645080000	349350000	159120000	190230000	795530000	439080000	356450000	149520000	75857000	73665000	40413000	15675000	24738000	54536	816	51381	330062;330063;330064;330065;330066;330067;330068;330069	445066;445067;445068;445069;445070;445071;445072;445073;445074;445075;445076;445077	445074			12	
VHYENNSPFLTITSMTR	0	Oxidation (M)	2024.9626	0.96257522	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	67.288	58.235	3	3.688E-05	31905	160513_QHF_FH_JSI10Kac_6	79.489	74.872			0.93706	1.0174	8.4374	4	0	Median	1.3117	1.1167	NaN	1	0	Median	0.90099	1.0771	NaN	1	0	Median	0.97458	0.96094	NaN	1	0	Median	0.87012	0.94017	NaN	1	0	Median	89285000	38013000	51272000	30969000	9720900	21248000	28039000	15539000	12500000	12841000	4017600	8823200	17436000	8734600	8701400	54537	816	51381	330070;330071;330072;330073	445078;445079;445080;445081;445082	445081		344	5	
VHYGFILK	1	Unmodified	975.55419	0.55418762	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	6.07		4	6						4	3	3	4	4	49.953	46.745	2;3	5.3502E-05	24835	160513_QHF_FH_JSI9Kac_6	105.12	82.376			0.99207	0.9777	12.509	14	0	Median	1.0606	0.85125	4.572	3	0	Plateau	0.82464	0.95824	3.8938	3	0	Plateau	1.0584	1.0413	13.711	4	0	Median	1.0453	1.083	10.979	4	0	Median	5159100000	2428800000	2730200000	993390000	424670000	568710000	1120400000	567140000	553270000	1178100000	578680000	599440000	1867200000	858340000	1008800000	54538	2307	51382	330074;330075;330076;330077;330078;330079;330080;330081;330082;330083;330084;330085;330086;330087	445083;445084;445085;445086;445087;445088;445089;445090;445091;445092;445093;445094;445095;445096;445097;445098;445099;445100;445101;445102;445103;445104;445105;445106;445107;445108;445109;445110;445111;445112;445113;445114;445115	445103			33	
VHYLFPDGK	1	Unmodified	1074.5498	0.54983053	4479	Q9BVM2	DPCD	Protein DPCD	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	39.553	38.625	3	0.020132	33348	160511_QHF_FH_JSI12i_2	28.727	20.802			1.1941	1.1873	10.853	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90242	1.0639	NaN	1	0	Median	1.2635	1.2967	NaN	1	0	Median	0.99248	1.0872	NaN	1	0	Median	56880000	31220000	25660000	0	0	0	16174000	9373900	6799900	21266000	12159000	9107500	19439000	9687100	9752200	54539	4479	51383	330088;330089;330090	445116	445116			1	
VIAAEGEMNASR	0	Unmodified	1246.5976	0.59758535	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	24.726	24.009	2	0.00012432	20573	160511_QHF_FH_JSI9i_2	85.377	57.635			0.92596	0.90573	14.797	8	3	Median	1.0756	0.90573	3.1955	2	0	Median	0.79978	0.95675	27.869	2	1	Median	0.87207	0.86043	17.65	2	1	Median	0.83161	0.91608	17.89	2	1	Median	1219800000	621300000	598490000	228120000	104380000	123740000	309220000	174210000	135000000	388430000	193200000	195220000	294030000	149510000	144520000	54540	1286	51384	330091;330092;330093;330094;330095;330096;330097;330098;330099	445117;445118;445119;445120;445121;445122;445123;445124;445125;445126	445123			10	
VIAAEGEMNASR	0	Oxidation (M)	1262.5925	0.59249998	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	1	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	24.736	24.028	2	0.0090176	21307	160511_QHF_FH_JSI12i_1	52.79	35.559			0.83765	0.96203	5.9849	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78426	1.0036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89467	0.92216	NaN	1	0	Median	83471000	50502000	32969000	0	0	0	12347000	6810900	5535700	0	0	0	71125000	43691000	27433000	54541	1286	51384	330100;330101	445127	445127		923	1	
VIAALLQTMEDQGNQR	0	Unmodified	1785.9043	0.90433206	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	3	3	2	75.714	75.01	2;3	1.0824E-45	66940	160511_QHF_FH_JSI11i_3	295.81	276.05			24.122	4.5049	120.38	10	10	Linear	6.2974	5.4142	42.543	2	2	Median	0.39269	0.47481	120.37	3	3	Median	7.3617	7.426	52.218	3	3	Median	4.7297	4.8712	22.497	2	2	Median	1017400000	206010000	811400000	317410000	46263000	271150000	130480000	84823000	45661000	426540000	45025000	381510000	142980000	29901000	113080000	54542	127	51385	330102;330103;330104;330105;330106;330107;330108;330109;330110;330111;330112	445128;445129;445130;445131;445132;445133;445134;445135;445136;445137;445138	445128			11	
VIAAMTVGK	1	Unmodified	888.51027	0.5102739	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.38		4					1	3		2	3	2	1	38.952	33.443	2	0.0012609	29215	160511_QHF_FH_JSI9i_2	69.825	26.824			0.92402	0.97502	55.114	8	0	Median	0.89927	0.76527	25.17	2	0	Median	0.92335	1.0167	4.163	3	0	Plateau	1.0131	1.0163	11.777	2	0	Median	0.20189	0.21894	NaN	1	0	Median	627100000	372990000	254110000	163270000	91898000	71372000	149600000	86567000	63037000	233300000	127900000	105400000	80930000	66621000	14309000	54543	2046	51386	330113;330114;330115;330116;330117;330118;330119;330120	445139;445140;445141;445142;445143;445144;445145;445146;445147;445148	445142			9	
VIAATNRVDILDPALLR	0	Unmodified	1849.0785	0.078531678	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	81.523	80.818	3	0.00010704	67813	160511_QHF_FH_JSI10i_3	80.738	58.524			1.0117	1.0642	29.185	4	1	Median	2.1967	1.7545	NaN	1	0	Median	0.9253	1.0861	NaN	1	1	Median	1.1061	1.0428	NaN	1	0	Median	0.87922	0.8924	NaN	1	0	Median	740110000	349770000	390340000	156510000	56695000	99812000	209410000	117490000	91922000	196290000	91657000	104630000	177910000	83930000	93975000	54544	1131	51387	330121;330122;330123;330124	445149;445150	445149			2	
VIACDGGGGALGHPK	1	Unmodified	1407.6929	0.69288272	514	O75380	NDUFS6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	20.687	20.114	3	1.9279E-07	16524	160511_QHF_FH_JSI11i_2	136.6	120.25			1.0373	1.2921	16.664	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.282	1.5808	NaN	1	1	Median	1.0809	1.0851	NaN	1	0	Median	1.2189	1.2921	11.113	2	1	Median	303390000	146990000	156400000	0	0	0	66551000	35735000	30816000	104220000	51301000	52916000	132620000	59956000	72664000	54545	514	51388	330125;330126;330127;330128	445151;445152;445153;445154;445155;445156	445154			6	
VIADNVK	1	Unmodified	757.4334	0.43340378	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	5.12			4		2		3			1	3	3	2	14.634	10.099	2	0.021072	7024	160513_QHF_FH_JSI12Kac_4	69.383	30.547			0.89452	0.95225	13.199	9	0	Median	1.2323	0.99201	NaN	1	0	Median	0.79379	0.95225	9.1941	3	0	Median	0.9315	0.86818	20.822	3	0	Median	0.87375	0.91625	17.509	2	0	Median	2304800000	1261500000	1043400000	656540000	346220000	310320000	641060000	383860000	257200000	334410000	157920000	176490000	672810000	373460000	299350000	54546	1908	51389	330129;330130;330131;330132;330133;330134;330135;330136;330137	445157;445158;445159	445159			3	
VIADNVKDWSK	2	Acetyl (K)	1315.6772	0.67721588	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		62.023	51.141	2	0.017372	28066	160513_QHF_FH_JSI10Kac_4	71.03	54.49			0.61242	0.66362	95.885	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0962	1.3073	NaN	1	0	Median	0.34216	0.33687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39531000	22124000	17406000	0	0	0	22747000	11325000	11422000	16784000	10799000	5984200	0	0	0	54547	1908	51390	330138;330139	445160	445160	1906;1911		0	
VIAEGDLGIVEK	1	Unmodified	1241.6867	0.68671794	738	O95861	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	56.596	55.892	2	2.2688E-05	50390	160511_QHF_FH_JSI10i_1	110.39	84.828			0.80513	0.82629	36.677	5	1	Median	0.86851	0.7175	NaN	1	0	Median	0.47052	0.55379	56.591	2	1	Median	0.93018	0.91651	NaN	1	0	Median	0.80513	0.84364	NaN	1	0	Median	683110000	394640000	288470000	153900000	82975000	70928000	178720000	111530000	67199000	194460000	110800000	83663000	156020000	89342000	66681000	54548	738	51391	330140;330141;330142;330143;330144	445161;445162;445163;445164;445165	445163			5	
VIAGLPDLTFMHAK	1	Unmodified	1511.817	0.8170206	3142	Q6ULP2	AFTPH	Aftiphilin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.732	84.023	3	0.0031494	73891	160511_QHF_FH_JSI11i_2	45.115	32.238			0.92509	0.92505	6.4647	4	1	Median	1.0675	0.90529	NaN	1	0	Median	0.6429	0.82586	NaN	1	0	Median	1.0058	0.94917	NaN	1	0	Median	0.85084	0.94524	NaN	1	1	Median	53898000	26969000	26929000	9175200	3085200	6090100	12955000	6666400	6288300	16718000	7527800	9190100	15050000	9689400	5360500	54549	3142	51392	330145;330146;330147;330148	445166;445167;445168	445167			3	
VIAGLYQR	0	Unmodified	918.5287	0.52870115	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.21	6.42		5	4					1	4	4	3	4	3	36.097	31.999	2	1.4258E-05	27748	160511_QHF_FH_JSI11i_3	140.01	87.329			1.1673	1.0611	11.467	13	0	Median	1.2367	1.0657	9.8225	4	0	Median	0.847	1.0311	4.4328	3	0	Median	1.1038	1.0611	15.298	3	0	Median	1.1784	1.1898	11.724	3	0	Plateau	6084100000	2693200000	3390900000	1283100000	465600000	817530000	1601500000	761480000	840050000	1699800000	700110000	999710000	1499700000	766010000	733650000	54550	2094	51393	330149;330150;330151;330152;330153;330154;330155;330156;330157;330158;330159;330160;330161;330162	445169;445170;445171;445172;445173;445174;445175;445176;445177;445178;445179;445180;445181;445182;445183	445169			15	
VIAHSEYQK	1	Unmodified	1073.5506	0.55055881	1692	P49914	MTHFS	5-formyltetrahydrofolate cyclo-ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	1	2		9.6924	7.0772	2;3	0.00079124	6333	160511_QHF_FH_JSI9i_2	85.212	59.475			0.23664	0.23937	85.459	4	3	Median	0.17916	0.15027	NaN	1	1	Median	0.31257	0.3813	NaN	1	1	Median	0.35754	0.3617	125.98	2	1	Median	NaN	NaN	NaN	0	0	Median	401520000	326470000	75048000	62027000	50809000	11217000	193100000	148500000	44597000	146400000	127160000	19233000	0	0	0	54551	1692	51394	330163;330164;330165;330166	445184;445185;445186;445187	445185			4	
VIAHTQMR	0	Oxidation (M)	970.50183	0.50183448	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.04	1	4	17						9	10	8	6	7	6.5574	4.0702	2;3	0.00099241	2677	160511_QHF_FH_JSI9i_3	71.501	44.247			0.92915	0.97912	36.58	30	3	Median	1.4666	1.2116	57.207	10	1	Median	0.90934	1.0729	10.852	8	0	Median	0.91759	0.86739	16.935	5	1	Median	0.82842	0.86768	16.735	7	1	Median	12663000000	5880100000	6782600000	5471100000	2261800000	3209400000	4202300000	1988100000	2214200000	974870000	502830000	472040000	2014400000	1127400000	887000000	54552	1484	51395	330167;330168;330169;330170;330171;330172;330173;330174;330175;330176;330177;330178;330179;330180;330181;330182;330183;330184;330185;330186;330187;330188;330189;330190;330191;330192;330193;330194;330195;330196;330197	445188;445189;445190;445191;445192;445193;445194;445195;445196;445197;445198;445199;445200;445201;445202;445203;445204;445205;445206;445207;445208;445209;445210;445211;445212;445213;445214;445215;445216;445217;445218;445219;445220;445221	445202		1167	34	
VIAHTQMR	0	Unmodified	954.50692	0.50691985	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.09		4	8						5	4	5	5	3	9.1895	6.635	2;3	1.232E-06	5908	160511_QHF_FH_JSI10i_3	149.4	107.9			0.90699	0.85961	20.366	17	0	Median	1.2857	1.0703	19.606	4	0	Median	0.73527	0.84327	15.026	5	0	Median	0.93549	0.88408	8.6241	5	0	Median	0.60431	0.6288	32.509	3	0	Median	24635000000	12725000000	11911000000	7418600000	3096000000	4322700000	8467400000	4941800000	3525600000	4991700000	2183100000	2808600000	3757500000	2503800000	1253700000	54553	1484	51395	330198;330199;330200;330201;330202;330203;330204;330205;330206;330207;330208;330209;330210;330211;330212;330213;330214	445222;445223;445224;445225;445226;445227;445228;445229;445230;445231;445232;445233;445234;445235;445236;445237;445238;445239;445240;445241;445242;445243;445244;445245;445246;445247;445248;445249	445227			28	
VIAINVDDPDAANYNDINDVK	1	Unmodified	2287.0968	0.096820096	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.8	8		2							3	3	2	2	73.539	72.846	2;3	3.1055E-46	66411	160511_QHF_FH_JSI12i_1	200.39	195.94			1.0217	0.96536	14.542	10	2	Median	1.0352	0.84916	18.177	3	1	Plateau	0.79822	0.95192	16.41	3	1	Plateau	1.026	1.0086	0.36803	2	0	Median	0.82745	0.86601	11.668	2	0	Median	2043500000	1034700000	1008800000	252200000	121490000	130710000	826160000	411100000	415060000	409100000	210190000	198910000	556050000	291890000	264160000	54554	2641	51396	330215;330216;330217;330218;330219;330220;330221;330222;330223;330224	445250;445251;445252;445253;445254;445255;445256;445257;445258;445259;445260;445261;445262;445263;445264;445265;445266;445267;445268;445269;445270;445271;445272;445273;445274;445275;445276;445277;445278;445279;445280;445281;445282;445283	445261			34	
VIALGLPVPR	0	Unmodified	1033.6648	0.6648007	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	75.999	75.322	2	0.0060875	66506	160511_QHF_FH_JSI9i_2	53.166	48.312			0.97536	1.0244	24.803	5	1	Median	1.1785	1.0244	NaN	1	0	Median	0.94358	1.166	NaN	1	0	Median	1.3542	1.3129	42.794	2	1	Median	0.92178	1.0191	NaN	1	0	Median	117560000	59919000	57644000	19291000	9417200	9874000	23844000	12311000	11533000	53720000	26351000	27368000	20708000	11839000	8869000	54555	15	51397	330225;330226;330227;330228;330229	445284;445285;445286;445287;445288;445289	445287			6	
VIANQQQVLQR	0	Unmodified	1295.731	0.73098279	3385	Q86YD1	PTOV1	Prostate tumor-overexpressed gene 1 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	36.625	27.152	2	0.0019301	15817	160513_QHF_FH_JSI10Kac_4	73.931	52.467			0.87205	0.84006	10.401	3	0	Median	NaN	NaN	NaN	0	0	Median	0.66537	0.792	NaN	1	0	Median	0.87205	0.84006	NaN	1	0	Median	0.90822	0.96952	NaN	1	0	Median	10382000	5825600	4556800	0	0	0	4186800	2572600	1614200	2754700	1392300	1362400	3440900	1860700	1580100	54556	3385	51398	330230;330231;330232	445290;445291;445292;445293;445294	445290			5	
VIAPMLSR	0	Unmodified	885.51061	0.51060825	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	1	2	1	44.815	43.559	2	0.0073349	38267	160511_QHF_FH_JSI11i_3	58.604	27.301			0.86969	0.98048	5.7387	4	0	Median	1.2761	1.0236	NaN	1	0	Median	0.82959	0.97224	NaN	1	0	Median	0.87184	0.89417	NaN	1	0	Median	0.86755	0.9888	NaN	1	0	Median	501480000	275860000	225620000	151940000	72694000	79245000	217290000	124280000	93016000	79200000	45787000	33413000	53044000	33099000	19945000	54557	430	51399	330233;330234;330235;330236;330237	445295;445296;445297;445298;445299;445300	445295			6	
VIAPNPAQLQGQR	0	Unmodified	1390.7681	0.76809658	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	42.766	41.938	2	7.8164E-05	36059	160511_QHF_FH_JSI11i_2	94.309	65.911			0.836	0.88735	14.179	9	6	Median	1.1027	0.93333	22.042	2	1	Median	0.74407	0.88735	6.0758	3	3	Median	0.99253	0.99874	27.454	2	1	Median	0.85522	0.8999	12.505	2	1	Median	503470000	261550000	241920000	89648000	40218000	49431000	133200000	71124000	62077000	152930000	82025000	70905000	127690000	68181000	59510000	54558	3813	51400	330238;330239;330240;330241;330242;330243;330244;330245;330246	445301;445302;445303;445304;445305;445306;445307;445308;445309;445310;445311;445312	445310			12	
VIAQQVQLQQQQEQVR	0	Unmodified	1922.0334	0.033372399	2174	Q01664	TFAP4	Transcription factor AP-4	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	4									1		2	1	40.622	39.903	2;3	2.106E-11	35969	160511_QHF_FH_JSI11i_1	110.98	77.569			1.1421	1.2059	16.863	3	0	Median	1.8159	1.4957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1224	1.0727	NaN	1	0	Median	1.1421	1.2059	NaN	1	0	Median	100760000	55460000	45302000	22197000	12390000	9807500	0	0	0	37808000	17194000	20614000	40757000	25876000	14880000	54559	2174	51401	330247;330248;330249;330250	445313;445314;445315	445313			1	
VIASELGSMPELK	1	Unmodified	1372.7272	0.72720254	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	7	7								4	2	4	4	67.612	66.845	2;3	5.4725E-06	57527	160511_QHF_FH_JSI12i_2	126.19	90.749			1.0632	1.0808	27.843	14	3	Median	1.4406	1.235	38.194	4	0	Median	1.3283	1.5765	18.272	2	0	Median	0.99709	0.98678	27.532	4	1	Median	0.96919	1.0323	9.6689	4	2	Median	1081300000	521550000	559790000	242410000	109020000	133380000	62495000	26376000	36119000	418530000	207770000	210770000	357910000	178390000	179530000	54560	5215	51402	330251;330252;330253;330254;330255;330256;330257;330258;330259;330260;330261;330262;330263;330264	445316;445317;445318;445319;445320;445321;445322;445323;445324;445325;445326;445327;445328;445329;445330;445331;445332;445333	445319			18	
VIASELGSMPELKK	2	Unmodified	1500.8222	0.82216556	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							2	2	1	2	57.257	56.303	2;3	5.3848E-08	48381	160511_QHF_FH_JSI12i_3	95.854	82.576			1.0531	1.099	20.655	5	2	Median	1.1258	0.96312	37.423	2	2	Median	0.88348	1.099	NaN	1	0	Median	1.0531	1.0667	NaN	1	0	Median	1.0536	1.1786	NaN	1	0	Median	698240000	360920000	337320000	229490000	115610000	113880000	215470000	129500000	85971000	166070000	73277000	92797000	87205000	42536000	44669000	54561	5215	51403	330265;330266;330267;330268;330269;330270;330271	445334;445335;445336;445337;445338;445339;445340;445341	445341			8	
VIASMTVGK	1	Unmodified	904.50519	0.50518852	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	30.462	30.013	2	0.012834	26689	160511_QHF_FH_JSI10i_1	47.198	8.1758			0.72881	0.80755	4.4784	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70633	0.83353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75202	0.78238	NaN	1	0	Median	157570000	90953000	66620000	0	0	0	93774000	56930000	36844000	0	0	0	63799000	34023000	29775000	54562	2296	51404	330272;330273	445342;445343	445343			2	
VIATFTCSGEK	1	Unmodified	1211.5856	0.58562368	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.97	3	5					3	1		1	3	5	3	36.978	33.171	2	6.2537E-13	28123	160511_QHF_FH_JSI12i_2	144.77	83.798			0.90665	0.99119	35.263	12	5	Median	1.2199	1.0186	NaN	1	1	Median	0.91492	1.072	10.969	3	1	Plateau	0.89845	0.86837	54.787	5	3	Median	1.0306	1.116	20.334	3	0	Median	1152900000	526020000	626900000	68060000	23347000	44713000	335240000	151750000	183490000	492230000	249450000	242780000	257390000	101460000	155920000	54563	1645	51405	330274;330275;330276;330277;330278;330279;330280;330281;330282;330283;330284;330285	445344;445345;445346;445347;445348;445349;445350;445351;445352;445353;445354;445355;445356	445346			12	
VIAVYDLGGGTFDISILEIQK	1	Unmodified	2250.2148	0.21475039	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.2	2.23				1	1				3		3	2		103.18	95.816	3	0.00030666	59841	160513_QHF_FH_JSI10Kac_6	62.966	53.436			0.5918	0.6395	23.693	4	3	Median	NaN	NaN	NaN	0	0	Median	0.48711	0.58362	33.068	2	2	Median	0.66633	0.64775	21.949	2	1	Median	NaN	NaN	NaN	0	0	Median	18222000	14315000	3906800	0	0	0	14072000	11630000	2441300	4150200	2684600	1465600	0	0	0	54564	1480	51406	330286;330287;330288;330289;330290	445357;445358;445359;445360;445361;445362	445362			6	
VIAYNSEGK	1	Unmodified	979.49746	0.4974606	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	15.563	15.219	2	0.0029717	12723	160511_QHF_FH_JSI10i_1	61.582	40.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54565	5520	51407	330291;330292	445363;445364	445364			2	
VICILSHPIK	1	Unmodified	1178.6845	0.68454987	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.51		5	8						8	4	6	7	4	53.67	50.18	2;3	7.0095E-08	44036	160511_QHF_FH_JSI11i_3	135.83	123.47			1.0407	1.0818	72.283	19	1	Median	1.2498	1.0511	17.179	4	0	Median	0.84989	1.0061	25.436	6	0	Median	0.94052	0.90051	142.73	5	0	Median	1.2515	1.3318	11.571	4	1	Median	8640600000	4465800000	4174900000	678680000	291350000	387330000	1733800000	938990000	794790000	2902600000	1616200000	1286400000	3325600000	1619200000	1706400000	54566	1702	51408	330293;330294;330295;330296;330297;330298;330299;330300;330301;330302;330303;330304;330305;330306;330307;330308;330309;330310;330311;330312;330313	445365;445366;445367;445368;445369;445370;445371;445372;445373;445374;445375;445376;445377;445378;445379;445380;445381;445382;445383;445384;445385;445386;445387;445388;445389;445390;445391;445392;445393;445394;445395;445396	445367			32	
VICIPKSITPSR	1	Acetyl (K)	1411.7857	0.78572048	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.169	63.439	2	0.031551	33845	160513_QHF_FH_JSI11Kac_5	46.158	26.887			0.51618	0.50948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51618	0.50948	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4731200	3125200	1606000	0	0	0	0	0	0	4731200	3125200	1606000	0	0	0	54567	1054	51409	330314	445397	445397			1	
VIDDTNITR	0	Unmodified	1045.5404	0.54038805	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.67	4	4	1		1	3	2			2	5	5	3	26.345	22.413	2	3.1964E-05	19779	160511_QHF_FH_JSI10i_1	101.54	52.183			0.93186	0.97385	124.98	15	0	Median	1.0404	0.90481	9.6742	2	0	Median	0.86292	0.99584	14.037	5	0	Median	1.0378	1.0261	15.451	5	0	Median	0.0078681	0.0082902	277.64	3	0	Plateau	22180000000	12454000000	9725800000	6329000000	2331400000	3997600000	6153100000	3281900000	2871200000	5809900000	3088700000	2721200000	3887900000	3752100000	135840000	54568	842	51410	330315;330316;330317;330318;330319;330320;330321;330322;330323;330324;330325;330326;330327;330328;330329	445398;445399;445400;445401;445402;445403;445404;445405;445406;445407;445408;445409;445410;445411;445412;445413;445414	445406			17	
VIDFDENTALDDAEEESFRK	1	Unmodified	2342.055	0.055014861	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	4	6	2							1	3	4	4	74.591	74.056	3	2.6848E-14	66162	160511_QHF_FH_JSI11i_3	144.27	136.08			1.0162	1.0147	16.177	10	3	Median	1.0869	0.94717	NaN	1	0	Median	0.81963	0.98702	12.612	2	1	Median	1.1286	1.1636	5.6362	3	0	Plateau	0.89921	0.94054	22.754	4	2	Median	1124300000	601110000	523200000	124020000	64363000	59657000	258860000	151320000	107540000	336280000	176560000	159720000	405150000	208870000	196280000	54569	2524	51411	330330;330331;330332;330333;330334;330335;330336;330337;330338;330339;330340;330341	445415;445416;445417;445418;445419;445420;445421;445422;445423;445424;445425;445426;445427;445428;445429;445430;445431;445432;445433	445416			19	
VIDGLETLDELEK	1	Unmodified	1472.761	0.76100509	4674	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	1	2	82.498	81.995	2;3	6.1955E-07	74278	160511_QHF_FH_JSI10i_1	154.66	100.24			0.85318	0.83131	39.826	5	0	Median	0.66112	0.55971	55.945	2	0	Median	0.85318	0.98874	NaN	1	0	Median	0.84149	0.82727	NaN	1	0	Median	0.94008	0.96695	NaN	1	0	Median	536480000	264080000	272400000	155490000	70562000	84924000	151400000	89778000	61620000	118110000	57504000	60605000	111480000	46233000	65250000	54570	4674	51412	330342;330343;330344;330345;330346;330347;330348	445434;445435;445436;445437;445438;445439;445440;445441;445442;445443;445444;445445;445446;445447;445448	445440			15	
VIDGPHSGR	0	Unmodified	936.47773	0.47772821	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				7.4809	0.39031	3	0.046552	2625	160513_QHF_FH_JSI9Kac_6	18.335	7.9206			0.99691	0.86955	NaN	1	0	Median	0.99691	0.86955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2026000	852040	1174000	2026000	852040	1174000	0	0	0	0	0	0	0	0	0	54571	116	51413	330349	445449	445449			1	
VIDGTSGATLQASALSAKPGGQVK	2	Unmodified	2255.2121	0.21212463	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.659	51.424	3	1.9532E-08	44018	160511_QHF_FH_JSI12i_3	71.428	57.119			1.11	1.0823	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.11	1.0823	NaN	1	0	Median	45205000	19568000	25637000	0	0	0	0	0	0	0	0	0	45205000	19568000	25637000	54572	4936	51414	330350	445450;445451	445450			2	
VIDIEGCAHIVHK	1	Unmodified	1489.7711	0.77113304	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	41.053	40.913	3;4	0.00045312	34987	160511_QHF_FH_JSI12i_3	62.088	46.543			2.2098	2.2005	34.301	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3308	1.2303	NaN	1	0	Median	2.2267	2.2277	1.7358	2	1	Median	206730000	73250000	133480000	0	0	0	0	0	0	41080000	16501000	24579000	165650000	56749000	108900000	54573	1397	51415	330351;330352;330353	445452;445453;445454;445455	445454			3	
VIDIFDTDGNGEVDFK	1	Unmodified	1782.8312	0.83120992	2050	P63098	PPP3R1	Calcineurin subunit B type 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	86.901	86.415	2	0.00068466	78640	160511_QHF_FH_JSI12i_1	76.522	61.832			0.48722	0.50831	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48722	0.50831	NaN	1	1	Median	30525000	18036000	12490000	0	0	0	0	0	0	0	0	0	30525000	18036000	12490000	54574	2050	51416	330354;330355	445456;445457	445457			2	
VIDLTRNEATVETLTETK	1	Unmodified	2032.0688	0.068814432	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	66.929	66.78	3	0.018413	57771	160511_QHF_FH_JSI12i_3	36.481	21.226			1.5679	1.5243	12.773	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7829	1.6683	NaN	1	1	Median	1.3789	1.3926	NaN	1	0	Median	77328000	26680000	50648000	0	0	0	0	0	0	21840000	4448400	17391000	55489000	22232000	33257000	54575	4603	51417	330356;330357	445458;445459	445459			2	
VIDNFTSQLK	1	Unmodified	1163.6186	0.61863837	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	49.005	48.114	2	0.0064388	41136	160511_QHF_FH_JSI12i_2	52.725	48.186			0.8805	0.98929	14.074	7	1	Median	1.1146	0.93291	15.659	2	0	Median	0.89685	1.0794	12.324	2	1	Median	0.79512	0.80089	NaN	1	0	Median	0.8508	0.91426	11.79	2	0	Median	398910000	208000000	190910000	102380000	50678000	51705000	100980000	50582000	50399000	69315000	36412000	32902000	126230000	70327000	55905000	54576	1360	51418	330358;330359;330360;330361;330362;330363;330364	445460;445461;445462;445463;445464	445460			5	
VIDPATATSVDLR	0	Unmodified	1356.7249	0.72489436	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.82	5.82	4	2	4			3	3	1		2	5	4	6	58.811	54.401	2	1.5388E-12	29328	160513_QHF_FH_JSI10Kac_4	129.7	106.27			0.93216	0.98807	17.625	16	1	Median	1.1718	0.97017	10.158	2	0	Median	0.821	0.9876	15.505	5	0	Median	0.99761	1.0465	7.6536	4	0	Linear	0.87516	0.92964	28.227	5	1	Median	10150000000	5203800000	4945800000	2672700000	1239800000	1432900000	2748600000	1472700000	1275900000	2214600000	1117700000	1096900000	2513600000	1373500000	1140100000	54577	1722	51419	330365;330366;330367;330368;330369;330370;330371;330372;330373;330374;330375;330376;330377;330378;330379;330380;330381	445465;445466;445467;445468;445469;445470;445471;445472;445473;445474;445475;445476;445477;445478;445479;445480;445481;445482;445483;445484;445485;445486;445487;445488;445489	445474			25	
VIDPATATSVDLRDIK	1	Unmodified	1712.9309	0.93086439	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	64.999	64.207	3	0.0016423	55188	160511_QHF_FH_JSI12i_2	52.862	46.175			1.0921	1.0604	31.836	5	1	Median	1.0921	0.92944	NaN	1	0	Median	1.1529	1.3724	36.47	2	1	Median	0.77824	0.78545	NaN	1	0	Median	1.1887	1.3294	NaN	1	0	Median	530410000	295820000	234580000	82017000	42289000	39728000	242270000	128710000	113560000	59502000	38694000	20807000	146620000	86128000	60494000	54578	1722	51420	330382;330383;330384;330385;330386	445490;445491;445492;445493;445494	445490			5	
VIDPVAPR	0	Unmodified	865.50215	0.50215205	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								2	3	2	2	28.881	28.077	2	0.0042817	23597	160511_QHF_FH_JSI12i_2	69.176	51.614			0.99248	1.0486	16.821	7	2	Median	1.4918	1.2649	1.6025	2	1	Median	0.80792	0.96669	23.56	2	1	Median	1.0775	1.0486	NaN	1	0	Median	0.8694	0.92912	3.6085	2	0	Median	1990100000	1004200000	985880000	511560000	235290000	276280000	607520000	330250000	277270000	265100000	124890000	140220000	605900000	313790000	292110000	54579	878	51421	330387;330388;330389;330390;330391;330392;330393;330394;330395	445495;445496;445497;445498;445499;445500;445501;445502;445503	445495			9	
VIDPVTGKPCAGTTYLESPLSSETTQLSK	2	Unmodified	3078.5431	0.54309675	5531	Q9Y2R5	MRPS17	28S ribosomal protein S17, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	1.67	0.471	1	2										1	2	77.554	76.755	3	8.3911E-14	67422	160511_QHF_FH_JSI11i_2	80.847	78.262			0.71045	0.69734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71045	0.69734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33289000	9060500	24228000	0	0	0	0	0	0	13098000	9060500	4037700	20191000	0	20191000	54580	5531	51422	330396;330397;330398	445504;445505;445506;445507	445506			4	
VIDQQNGLYR	0	Unmodified	1204.62	0.62003536	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	26.644	25.75	2	2.4328E-07	21599	160511_QHF_FH_JSI11i_2	114.93	90.777			0.92711	1.0352	21.785	4	1	Median	0.88007	0.7365	NaN	1	1	Median	0.97666	1.2226	NaN	1	0	Median	1.099	1.0954	NaN	1	0	Median	0.86123	0.97829	NaN	1	0	Median	243260000	120100000	123160000	62428000	35046000	27382000	41354000	18905000	22449000	86958000	37284000	49674000	52519000	28861000	23657000	54581	1293	51423	330399;330400;330401;330402	445508;445509;445510;445511	445510			4	
VIDRELYQQLQR	0	Unmodified	1559.842	0.8419898	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			47.678	46.09	3	2.0579E-05	37770	160511_QHF_FH_JSI9i_3	99.215	86.589			0.94842	0.91438	5.5183	2	0	Median	1.1044	0.87938	NaN	1	0	Median	0.81449	0.95076	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191570000	102760000	88815000	128350000	66314000	62040000	63221000	36446000	26775000	0	0	0	0	0	0	54582	2636	51424	330403;330404	445512;445513;445514;445515	445515			4	
VIDSSDVVVQVLDAR	0	Unmodified	1613.8625	0.86245047	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			85.443	85.303	2	0.036769	77511	160511_QHF_FH_JSI10i_1	46.88	22.498			0.44765	0.4955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44765	0.4955	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12686000	9689300	2997000	0	0	0	12686000	9689300	2997000	0	0	0	0	0	0	54583	2471	51425	330405	445516	445516			1	
VIDSSDVVVQVLDARDPMGTR	0	Unmodified	2271.1529	0.15289519	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	87.855	87.8	3	0.0061784	76278	160511_QHF_FH_JSI12i_3	38.271	29.776			1.9577	1.9272	31.328	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6148	1.5442	NaN	1	1	Median	2.3736	2.405	NaN	1	1	Median	53100000	12158000	40942000	0	0	0	0	0	0	18466000	4924000	13542000	34634000	7234300	27400000	54584	2471	51426	330406;330407	445517;445518	445518			2	
VIDTQQK	1	Unmodified	830.44978	0.44978213	461	O60925	PFDN1	Prefoldin subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	7.0628	6.69	2	0.0091729	4243	160511_QHF_FH_JSI9i_1	80.294	33.492			0.7295	0.82731	37.717	6	0	Median	0.63794	0.53946	67.435	2	0	Median	0.59681	0.73137	17.323	2	0	Median	0.9221	0.89218	NaN	1	0	Median	0.77832	0.82795	NaN	1	0	Median	2705600000	1636900000	1068700000	814360000	520040000	294320000	672610000	416290000	256320000	523520000	301170000	222350000	695070000	399400000	295670000	54585	461	51427	330408;330409;330410;330411;330412;330413	445519;445520;445521	445521			3	
VIDTTTLPVYPK	1	Unmodified	1345.7493	0.74931819	4513	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1	0	3										1	1	1	62.442	61.953	2	0.0083287	56200	160511_QHF_FH_JSI11i_1	50.108	32.243			0.96096	1.0091	6.9757	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89814	1.0242	NaN	1	0	Median	0.93699	0.90152	NaN	1	0	Median	0.98554	1.0091	NaN	1	0	Median	88512000	40752000	47760000	0	0	0	21719000	10354000	11365000	33318000	15447000	17871000	33475000	14951000	18524000	54586	4513	51428	330414;330415;330416	445522	445522			1	
VIDVFAMPQSGTGVSVEAVDPVFQAK	1	Unmodified	2690.3626	0.36255361	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	101.39	101.31	3	1.449E-25	91863	160511_QHF_FH_JSI12i_1	129.78	122.99			0.90761	1.0547	2.46	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88043	1.0394	NaN	1	0	Median	1.1076	1.0547	NaN	1	0	Median	1.0303	1.0905	NaN	1	0	Median	1267300000	641820000	625470000	0	0	0	515650000	263450000	252200000	318840000	157480000	161370000	432790000	220890000	211900000	54587	144	51429	330417;330418;330419	445523;445524;445525;445526;445527	445524			5	
VIDVFAMPQSGTGVSVEAVDPVFQAK	1	Oxidation (M)	2706.3575	0.35746823	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	1	0				By MS/MS	1	0	2												2	100.52	100.37	3	0.0021241	90930	160511_QHF_FH_JSI12i_1	39.122	27.599			0.71493	0.70849	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71493	0.70849	NaN	1	1	Median	13254000	10094000	3160100	0	0	0	0	0	0	0	0	0	13254000	10094000	3160100	54588	144	51429	330420;330421	445528;445529	445529		66	2	
VIEASFPAGVDSSPR	0	Unmodified	1530.7678	0.7678218	2766	Q16790	CA9	Carbonic anhydrase 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	55.52	54.779	2	0.00019946	49899	160511_QHF_FH_JSI12i_1	88.441	64.454			0.88886	1.3533	32.302	3	2	Plateau	0.88886	0.75017	NaN	1	1	Median	0.72935	0.82764	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.321	1.3698	NaN	1	0	Median	105610000	55033000	50576000	27532000	14164000	13368000	29899000	19920000	9978700	0	0	0	48179000	20950000	27230000	54589	2766	51430	330422;330423;330424	445530;445531;445532;445533	445531			4	
VIECSYTSADGQR	0	Unmodified	1484.6566	0.6565568	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	22.496	22.186	2	4.8424E-06	19335	160511_QHF_FH_JSI10i_1	87.298	79.078			1.191	1.3206	33.418	3	1	Median	NaN	NaN	NaN	0	0	Median	1.191	1.3206	NaN	1	1	Median	0.80591	0.76917	NaN	1	0	Median	1.3731	1.4166	NaN	1	0	Median	99100000	42714000	56386000	0	0	0	19721000	6784800	12937000	37902000	19293000	18609000	41477000	16636000	24841000	54590	5242	51431	330425;330426;330427;330428	445534;445535;445536;445537;445538;445539	445539			6	
VIEDGPEPRPNLR	0	Unmodified	1490.7841	0.78414057	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			31.083	30.093	3	0.028497	26149	160511_QHF_FH_JSI9i_2	35.204	30.109			0.95012	0.95508	9.6516	2	0	Median	1.0613	0.89208	NaN	1	0	Median	0.85056	1.0225	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48149000	24156000	23993000	22602000	8524400	14078000	25547000	15632000	9914900	0	0	0	0	0	0	54591	408	51432	330429;330430	445540	445540			1	
VIEDNEYTAR	0	Unmodified	1208.5673	0.56733108	885	P07948	LYN	Tyrosine-protein kinase Lyn	no	no	0	0	0	0				By MS/MS	1	0	1												1	20.46	19.969	2	0.028285	17358	160511_QHF_FH_JSI12i_1	47.732	40.042			1.0024	1.0151	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0024	1.0151	NaN	1	1	Median	131660000	55189000	76468000	0	0	0	0	0	0	0	0	0	131660000	55189000	76468000	54592	885	51433	330431	445541	445541			1	
VIEDRDHYIPNTLNPVFGR	0	Unmodified	2254.1495	0.14946479	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			68.005	66.52	3;4	0.0010206	54728	160511_QHF_FH_JSI9i_3	53.278	38.024			1.0716	1.0394	6.7993	2	0	Median	1.3158	1.0906	NaN	1	0	Median	0.87265	0.99064	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55046000	29353000	25693000	31662000	15753000	15909000	23383000	13600000	9783600	0	0	0	0	0	0	54593	5161	51434	330432;330433;330434	445542;445543;445544	445544			3	
VIEDRDSQLR	0	Unmodified	1229.6364	0.6364137	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	6.78	5.83		2	4					3			2	4	3	14.8	11.63	2;3	0.00063438	10100	160511_QHF_FH_JSI11i_3	65.5	54.914			0.85145	0.85957	20.307	9	2	Median	NaN	NaN	NaN	0	0	Median	0.83675	1.02	24.2	2	1	Median	1.0277	0.98341	24.537	4	1	Median	0.93887	0.90059	14.141	3	0	Plateau	748800000	375350000	373440000	0	0	0	64259000	28706000	35554000	348970000	162830000	186150000	335570000	183820000	151740000	54594	3503	51435	330435;330436;330437;330438;330439;330440;330441;330442;330443	445545;445546;445547;445548;445549;445550;445551;445552;445553;445554;445555	445547			11	
VIEEEWQQVDR	0	Unmodified	1429.6838	0.68375782	1526	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.09	2	5					1			2	1	1	4	46.672	44.339	2	4.7043E-06	40317	160511_QHF_FH_JSI12i_1	115.78	101.32			1.1195	1.0699	21.628	7	3	Median	1.3602	1.1594	15.129	2	1	Median	0.87389	1.0699	NaN	1	0	Median	0.88072	0.87718	NaN	1	0	Median	1.1195	1.2029	32.075	3	2	Median	851760000	362420000	489340000	262360000	81419000	180940000	72377000	28602000	43776000	66226000	41688000	24538000	450800000	210710000	240090000	54595	1526	51436	330444;330445;330446;330447;330448;330449;330450;330451	445556;445557;445558;445559;445560;445561;445562;445563;445564;445565;445566	445558			11	
VIEEQLEPAVEK	1	Unmodified	1382.7293	0.72931103	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	2	3	48.702	44.308	2	5.0129E-24	40328	160511_QHF_FH_JSI12i_1	183	136.11			1.0407	1.0829	9.2237	7	0	Median	1.3403	1.0687	NaN	1	0	Median	0.86308	1.0129	9.4425	2	0	Median	1.0145	0.99627	13.038	2	0	Median	1.0645	1.1505	0.87488	2	0	Median	5509800000	2430900000	3078900000	1207900000	519800000	688070000	1430100000	750820000	679260000	1717500000	667400000	1050100000	1154400000	492850000	661510000	54596	1544	51437	330452;330453;330454;330455;330456;330457;330458;330459	445567;445568;445569;445570;445571;445572;445573;445574;445575;445576;445577;445578;445579;445580;445581;445582;445583;445584;445585;445586	445575			20	
VIEGDVVSALNK	1	Unmodified	1242.682	0.68196691	1613	P48059	LIMS1	LIM and senescent cell antigen-like-containing domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.5	0.5	3	3								2	2		2	54.91	53.985	2	1.4732E-05	49142	160511_QHF_FH_JSI12i_1	114.4	90.633			1.481	1.3548	50.585	5	2	Median	1.8206	1.5374	24.176	2	1	Median	3.0077	3.5351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0456	1.1166	27.343	2	0	Median	893630000	311410000	582220000	308090000	115100000	193000000	395820000	102260000	293560000	0	0	0	189720000	94061000	95663000	54597	1613	51438	330460;330461;330462;330463;330464;330465	445587;445588;445589;445590;445591;445592;445593	445589			7	
VIEGLDTGLQGMCVGER	0	Unmodified	1832.8761	0.8760684	3973	Q96AY3	FKBP10	Peptidyl-prolyl cis-trans isomerase FKBP10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	71.179	70.703	2	7.0435E-05	64295	160511_QHF_FH_JSI11i_1	104.55	71.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54598	3973	51439	330466;330467	445594;445595	445594			2	
VIELENWTEGK	1	Unmodified	1316.6612	0.66123147	4995	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.5	0.5	3	3								2		2	2	63.545	62.728	2	3.5154E-05	57112	160511_QHF_FH_JSI12i_1	97.965	71.176			0.88311	0.83803	15.677	6	1	Median	0.86034	0.71366	0.097935	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88317	0.87139	18.984	2	1	Median	0.88311	0.94831	4.0195	2	0	Median	296550000	156820000	139730000	69850000	34490000	35360000	0	0	0	119450000	66248000	53205000	107250000	56084000	51162000	54599	4995	51440	330468;330469;330470;330471;330472;330473	445596;445597;445598;445599;445600;445601;445602;445603	445600			8	
VIELVDK	1	Unmodified	814.48002	0.48001963	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	35.492	35.073	2	0.044649	31352	160511_QHF_FH_JSI11i_1	45.081	13.146			1.1697	1.1682	9.4805	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.333	1.2492	NaN	1	0	Median	1.0264	1.0925	NaN	1	0	Median	131900000	70023000	61881000	0	0	0	0	0	0	71000000	38634000	32366000	60904000	31389000	29515000	54600	655	51441	330474;330475	445604	445604			1	
VIEPGCVR	0	Unmodified	928.48004	0.4800364	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		20.612	20.048	2	0.0070198	16473	160511_QHF_FH_JSI11i_2	60.799	32.287			0.98896	1.1029	5.8143	2	0	Median	NaN	NaN	NaN	0	0	Median	0.9258	1.1492	NaN	1	0	Median	1.0564	1.0585	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168430000	76560000	91866000	0	0	0	60927000	26151000	34776000	107500000	50409000	57089000	0	0	0	54601	456	51442	330476;330477	445605;445606	445606			2	
VIEPKDIHAK	2	Acetyl (K)	1190.6659	0.66592292	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	1	0	0	1		By matching	By MS/MS		14.3	0.471							2	1			1	2		37.953	28.235	3	0.011858	17398	160513_QHF_FH_JSI11Kac_4	39.179	21.315			0.6056	0.65176	105.27	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1611	1.372	NaN	1	0	Median	0.31588	0.30961	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21531000	17653000	3878400	0	0	0	4022200	1842400	2179800	17509000	15810000	1698600	0	0	0	54602	2374	51443	330478;330479;330480	445607;445608	445607	2444		2	
VIEPQYFGLAYLFR	0	Unmodified	1714.9083	0.90827845	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.46		8	7						8	6	5	6	6	100.01	97.027	2;3	2.3531E-55	49439	160513_QHF_FH_JSI11Kac_6	203.94	203.94			1.0962	1.083	11.392	23	0	Median	1.411	1.1865	12.639	6	0	Median	0.8904	1.0956	8.1428	5	0	Median	1.0986	1.0678	11.743	6	0	Median	0.97873	1.0553	10.686	6	0	Median	32683000000	15325000000	17358000000	7125800000	3201900000	3923900000	4954400000	2619900000	2334500000	12291000000	5545600000	6745700000	8311900000	3958000000	4354000000	54603	1544	51444	330481;330482;330483;330484;330485;330486;330487;330488;330489;330490;330491;330492;330493;330494;330495;330496;330497;330498;330499;330500;330501;330502;330503	445609;445610;445611;445612;445613;445614;445615;445616;445617;445618;445619;445620;445621;445622;445623;445624;445625;445626;445627;445628;445629;445630;445631;445632;445633;445634;445635;445636;445637;445638;445639;445640;445641;445642;445643;445644;445645;445646;445647	445617			39	
VIEPQYFGLAYLFRK	1	Unmodified	1843.0032	0.0032414695	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	91.093	82.557	3	3.7021E-11	45816	160513_QHF_FH_JSI9Kac_6	121.31	104.03			0.81166	0.73787	38.598	5	2	Median	0.84908	0.73787	NaN	1	0	Median	1.0962	1.3158	NaN	1	0	Median	0.48907	0.47834	NaN	1	0	Median	0.67651	0.7082	26.629	2	2	Median	1085200000	545750000	539470000	275470000	123530000	151940000	492560000	223170000	269390000	89889000	61749000	28140000	227290000	137290000	90000000	54604	1544	51445	330504;330505;330506;330507;330508	445648;445649;445650;445651;445652	445649			5	
VIEQLLVGLK	1	Unmodified	1110.7012	0.70124579	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	74.141	73.103	2	0.0033889	63143	160511_QHF_FH_JSI12i_2	69.812	53.668			1.1129	1.0994	63.5	2	2	Median	1.9535	1.7224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63404	0.70168	NaN	1	1	Median	47307000	25302000	22005000	16643000	7532600	9110200	0	0	0	0	0	0	30664000	17769000	12895000	54605	4424	51446	330509;330510	445653;445654	445653			2	
VIEQPIR	0	Unmodified	853.50215	0.50215205	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	22.355	21.515	2	0.0572	18527	160511_QHF_FH_JSI10i_2	41.502	10.213			0.88065	1.1351	17.294	4	0	Linear	1.2447	1.0348	NaN	1	0	Median	0.63209	0.76452	NaN	1	0	Median	1.062	1.0675	NaN	1	0	Median	0.73024	0.7974	NaN	1	0	Median	270740000	135870000	134860000	68707000	31195000	37513000	52224000	29283000	22942000	88684000	39328000	49355000	61120000	36068000	25052000	54606	3888	51447	330511;330512;330513;330514	445655	445655			1	
VIETNRENDK	1	Unmodified	1216.6048	0.60477922	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	5.9348	5.6801	2;3	2.9705E-13	3589	160511_QHF_FH_JSI11i_3	160.53	125.02			0.95939	0.92609	13.906	12	0	Median	1.1441	0.97648	8.8162	2	0	Median	0.66911	0.82529	2.6025	2	0	Median	1.0177	0.95089	11.125	4	0	Linear	0.85212	0.90203	8.2082	4	0	Median	3387100000	1641600000	1745500000	508560000	225500000	283060000	539720000	325870000	213840000	1619500000	776360000	843150000	719300000	313830000	405470000	54607	1085	51448	330515;330516;330517;330518;330519;330520;330521;330522;330523;330524;330525;330526	445656;445657;445658;445659;445660;445661;445662;445663;445664;445665;445666;445667;445668;445669;445670;445671;445672;445673;445674	445656			19	
VIETPENDFK	1	Unmodified	1190.5819	0.58191851	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		38.365	38.038	2	0.0036453	34440	160511_QHF_FH_JSI11i_1	68.846	44.027			1.8282	1.9365	20.911	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9339	2.2451	NaN	1	1	Median	1.7283	1.6703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	145330000	58528000	86802000	0	0	0	71608000	28101000	43507000	73722000	30427000	43295000	0	0	0	54608	4632	51449	330527;330528	445675;445676	445675			2	
VIEVSHWGNIAVEENVDLK	1	Unmodified	2150.1008	0.10078326	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	77.151	76.647	3	3.2922E-06	66472	160511_QHF_FH_JSI12i_3	88.781	82.365			0.48025	0.54913	43.12	2	1	Median	NaN	NaN	NaN	0	0	Median	0.31784	0.40482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72566	0.7449	NaN	1	0	Median	77814000	44345000	33469000	0	0	0	12098000	10413000	1684600	0	0	0	65716000	33931000	31784000	54609	816	51450	330529;330530	445677;445678;445679;445680;445681	445678			5	
VIEYETDPDLHWK	1	Unmodified	1643.7831	0.78313752	5789				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	68.654	68.099	3	0.050412	61389	160511_QHF_FH_JSI10i_1	14.03	7.9982	+		1.0692	1.086	8.505	10	0	Median	1.1547	0.94418	1.2791	2	0	Median	0.99537	1.1652	0	2	0	Median	1.2238	1.171	1.9281	3	0	Plateau	0.97372	1.0245	0.94184	3	0	Plateau	865570000	412720000	452850000	223030000	84153000	138870000	84701000	46254000	38446000	249700000	113290000	136410000	308150000	169020000	139120000	54610	5789	51451	330531;330532;330533;330534;330535;330536;330537;330538;330539;330540	445682;445683;445684	445684			3	
VIEYTDLEK	1	Unmodified	1108.5652	0.56520582	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	1	0	3									1	1		1	43.53	42.775	2	0.0040379	38883	160511_QHF_FH_JSI12i_1	57.708	31.324			0.80634	0.94915	5.7389	3	0	Plateau	1.2572	1.0293	NaN	1	0	Median	0.80634	0.94915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88836	0.92121	NaN	1	0	Median	276170000	141920000	134250000	72550000	32534000	40016000	108540000	59548000	48994000	0	0	0	95078000	49839000	45239000	54611	292	51452	330541;330542;330543	445685	445685			1	
VIFFLPWQK	1	Unmodified	1176.6696	0.66955173	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.63		3	4						5	4	3	3	2	98.766	95.171	2	1.7527E-16	48617	160513_QHF_FH_JSI10Kac_6	166.34	138.16			1.0416	1.0067	13.753	12	1	Median	1.1646	0.9803	9.8089	4	0	Median	0.83996	0.99785	17.154	3	0	Median	0.98258	0.92257	18.016	3	1	Median	1.0973	1.1287	14.929	2	0	Median	11691000000	5578500000	6112100000	2460500000	1112300000	1348200000	3855500000	2010200000	1845300000	2936300000	1287800000	1648600000	2438200000	1168200000	1270000000	54612	1558	51453	330544;330545;330546;330547;330548;330549;330550;330551;330552;330553;330554;330555	445686;445687;445688;445689;445690;445691;445692;445693;445694;445695;445696;445697;445698;445699;445700;445701;445702;445703	445703			18	
VIFGLFGK	1	Unmodified	879.52182	0.52182486	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.28	2	4	8		1		2	2	5	4	6	8	6	81.251	77.239	1;2	0.0014792	66945	160511_QHF_FH_JSI10i_3	98.133	58.591			1.0728	1.0423	22.047	23	0	Median	1.1577	1.042	7.2047	4	0	Median	0.86114	0.96746	12.116	6	0	Median	1.2477	1.1581	25.292	7	0	Median	1.0748	1.0784	27.078	6	0	Median	80399000000	32399000000	48000000000	20649000000	7539400000	13110000000	20974000000	9469900000	11504000000	22222000000	8797800000	13424000000	16553000000	6591600000	9961900000	54613	1224	51454	330556;330557;330558;330559;330560;330561;330562;330563;330564;330565;330566;330567;330568;330569;330570;330571;330572;330573;330574;330575;330576;330577;330578;330579	445704;445705;445706;445707;445708;445709;445710;445711;445712;445713;445714;445715;445716;445717;445718;445719;445720;445721;445722;445723;445724;445725;445726;445727;445728;445729;445730;445731;445732;445733;445734;445735;445736;445737;445738;445739;445740;445741;445742;445743;445744;445745;445746;445747;445748;445749;445750;445751;445752;445753;445754;445755;445756;445757;445758;445759;445760;445761;445762;445763	445718			60	
VIFGLFGKTVPK	2	Acetyl (K)	1346.7962	0.79620881	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	87.186	77.803	2	3.0416E-06	43320	160513_QHF_FH_JSI11Kac_6	104.52	77.269			0.29799	0.2989	0.19839	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31137	0.29931	NaN	1	0	Median	0.28518	0.29848	NaN	1	0	Median	308300000	241240000	67063000	0	0	0	0	0	0	258300000	202010000	56289000	50007000	39233000	10774000	54614	1224	51455	330580;330581	445764	445764	1103		1	
VIFHPEFLSSTSPLLPVDYEEFVR	0	Unmodified	2820.4374	0.43743311	1042	P13807	GYS1	Glycogen [starch] synthase, muscle	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.67	101.67	3	9.9167E-05	90769	160511_QHF_FH_JSI11i_3	48.913	41.882			1.8524	1.7731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8524	1.7731	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	316640000	133250000	183380000	0	0	0	0	0	0	316640000	133250000	183380000	0	0	0	54615	1042	51456	330582	445765	445765			1	
VIFITEYMSSGSLK	1	Unmodified	1573.8062	0.80618115	5316	Q9UHY1	NRBP1	Nuclear receptor-binding protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	12.5	6.06		1							3	1		2	1	84.827	75.704	2	2.461E-45	41534	160513_QHF_FH_JSI9Kac_6	194.17	160.79			0.91169	0.77587	13.337	3	0	Plateau	0.91416	0.77587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83227	0.78754	NaN	1	0	Median	0.91169	0.98447	NaN	1	0	Median	97745000	52528000	45217000	43403000	20618000	22786000	0	0	0	29168000	16411000	12757000	25175000	15500000	9674700	54616	5316	51457	330583;330584;330585;330586	445766;445767;445768;445769;445770	445769			5	
VIFLEDDDVAAVVDGR	0	Unmodified	1731.8679	0.86792978	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	1	3	90.648	90.277	2;3	2.4705E-05	81815	160511_QHF_FH_JSI10i_1	109	47.347			1.2034	1.0732	19.513	6	3	Median	1.2895	1.0503	NaN	1	1	Median	1.0173	1.186	38.823	2	0	Median	1.1231	1.0621	NaN	1	1	Median	1.181	1.1983	14.119	2	1	Median	221490000	118450000	103040000	14149000	5241000	8908400	89329000	50924000	38405000	49228000	29152000	20076000	68786000	33135000	35651000	54617	2242	51458	330587;330588;330589;330590;330591;330592;330593	445771;445772;445773;445774;445775;445776;445777;445778;445779;445780;445781;445782;445783	445779			13	
VIFLENYR	0	Unmodified	1052.5655	0.56548059	855;992	P06737;P11217;P11216	PYGL;PYGM;PYGB	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	57.957	57.54	2	0.00050512	49538	160511_QHF_FH_JSI12i_3	116.54	85.253			1.2707	1.2781	23.467	3	0	Median	1.0412	0.87606	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.435	1.347	NaN	1	0	Median	1.2707	1.2781	NaN	1	0	Median	365430000	182600000	182830000	72829000	46494000	26335000	0	0	0	142260000	61874000	80381000	150350000	74230000	76116000	54618	855;992	51459	330594;330595;330596	445784;445785;445786	445786			3	
VIFLLVGHK	1	Unmodified	1024.6433	0.64333698	3534	Q8N4Z0	RAB42	Putative Ras-related protein Rab-42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	6.04			6						13	5	6	4	4	70.384	63.529	2;3	2.5994E-05	34477	160513_QHF_FH_JSI11Kac_6	105.57	11.265			0.60219	0.6432	66.064	17	15	Median	0.50019	0.4327	89.959	5	5	Median	0.71389	0.85048	64.034	6	6	Median	0.6649	0.63275	22.487	3	1	Median	0.60219	1.2362	75.201	3	3	Plateau	1863100000	991650000	871480000	439680000	235360000	204310000	672440000	384920000	287520000	409580000	223610000	185970000	341440000	147760000	193680000	54619	3534	51460	330597;330598;330599;330600;330601;330602;330603;330604;330605;330606;330607;330608;330609;330610;330611;330612;330613;330614;330615	445787;445788;445789;445790;445791;445792;445793;445794;445795;445796;445797;445798;445799;445800;445801;445802;445803;445804;445805;445806;445807	445791			21	
VIFPAAEDKDQDLITIIGK	2	Unmodified	2085.1358	0.13577179	2147	Q00341	HDLBP	Vigilin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		2	4									2	4	90.809	90.515	2;3	2.1372E-09	78471	160511_QHF_FH_JSI12i_3	114.4	104.44			0.94456	0.95265	9.8048	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86882	0.85249	0.4971	2	0	Median	0.96402	1.0327	4.8939	3	1	Median	602960000	331240000	271720000	0	0	0	0	0	0	204400000	108100000	96304000	398560000	223140000	175420000	54620	2147	51461	330616;330617;330618;330619;330620;330621	445808;445809;445810;445811;445812	445810			5	
VIFPAPTPK	1	Unmodified	968.5695	0.56950333	2405	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	49.532	48.549	2	0.01581	41870	160511_QHF_FH_JSI11i_2	43.772	25.787			0.96924	0.9323	15.293	4	0	Median	1.055	0.88718	NaN	1	0	Median	0.99923	1.2404	NaN	1	0	Median	0.94014	0.93906	NaN	1	0	Median	0.83582	0.92559	NaN	1	0	Median	109890000	58852000	51035000	22554000	12813000	9740700	21843000	11131000	10712000	45379000	24564000	20815000	20110000	10344000	9766600	54621	2405	51462	330622;330623;330624;330625	445813	445813			1	
VIFPYEAQNDDELTIK	1	Unmodified	1893.936	0.93600934	3982	Q96B97	SH3KBP1	SH3 domain-containing kinase-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		78.545	78.297	2	3.7979E-05	70937	160511_QHF_FH_JSI10i_1	109.6	94.06			0.67966	0.70915	26.484	2	2	Median	NaN	NaN	NaN	0	0	Median	0.76328	0.85521	NaN	1	1	Median	0.6052	0.58805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37554000	25571000	11983000	0	0	0	20331000	14172000	6159000	17223000	11399000	5823900	0	0	0	54622	3982	51463	330626;330627	445814;445815	445815			2	
VIFTGGVGK	1	Unmodified	876.5069	0.50690308	5733	Q9Y6K0	CEPT1	Choline/ethanolaminephosphotransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	36.637	36.102	2	0.010901	31590	160511_QHF_FH_JSI11i_3	49.423	27.652			1.03	1.1451	35.95	3	0	Median	NaN	NaN	NaN	0	0	Median	1.03	1.1451	NaN	1	0	Median	1.7533	1.6472	NaN	1	0	Median	0.7811	0.80261	NaN	1	0	Median	153470000	70412000	83059000	0	0	0	29201000	14086000	15115000	58880000	22048000	36833000	65389000	34278000	31111000	54623	5733	51464	330628;330629;330630	445816	445816			1	
VIFTKPVR	1	Acetyl (K)	1000.607	0.60695147	5681	Q9Y5U2	TSSC4	Protein TSSC4	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.4	0.696							1	3	4	1	2	3	2	58.679	48.614	2	0.0041926	24853	160513_QHF_FH_JSI12Kac_5	88.942	54.135			0.99036	1.0395	3.4823	8	0	Median	1.2467	1.0653	NaN	1	0	Median	0.86355	1.0245	3.6429	2	0	Median	1.0182	0.98614	2.6227	3	0	Median	0.98261	1.0588	0.63327	2	0	Median	253030000	124230000	128800000	33385000	15872000	17512000	76623000	41096000	35527000	77230000	36057000	41173000	65788000	31204000	34583000	54624	5681	51465	330631;330632;330633;330634;330635;330636;330637;330638	445817;445818;445819;445820;445821	445819	3524		5	
VIFTSPIK	1	Unmodified	903.54295	0.54295423	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	2.33	0.471		4	2							2	1	1	2	53.556	52.609	2	0.00821	45091	160511_QHF_FH_JSI12i_2	57.177	11.46			0.9685	0.9455	13.567	6	0	Median	1.0533	0.87873	6.8197	2	0	Median	0.74438	0.91468	NaN	1	0	Median	0.95353	0.96945	NaN	1	0	Median	1.0804	1.1192	15.358	2	0	Median	401510000	208240000	193280000	84287000	42296000	41991000	72087000	43844000	28243000	126720000	60663000	66061000	118420000	61433000	56983000	54625	1532	51466	330639;330640;330641;330642;330643;330644	445822;445823;445824	445822			3	
VIFVGEDAVDAGGVRK	1	Unmodified	1630.8679	0.8678702	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	54.063	53.944	3	1.9302E-08	46093	160511_QHF_FH_JSI12i_3	100.43	84.881			0.55613	0.54159	72.119	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95669	0.90186	NaN	1	0	Median	0.32328	0.32523	NaN	1	1	Median	327640000	209550000	118080000	0	0	0	0	0	0	196480000	112120000	84361000	131150000	97430000	33721000	54626	2884	51467	330645;330646;330647	445825;445826;445827;445828	445828			4	
VIGAGKSWHK	2	Acetyl (K)	1123.6138	0.61382777	1191	P21291	CSRP1	Cysteine and glycine-rich protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	35.827	26.814	2;3	6.9236E-05	15118	160513_QHF_FH_JSI10Kac_6	91.469	74.238			0.68639	0.75834	12.899	7	0	Median	1.0202	0.87981	NaN	1	0	Median	0.65674	0.75476	0.67007	2	0	Median	0.6699	0.6431	5.6596	2	0	Median	0.78927	0.83742	2.1407	2	0	Median	233820000	118050000	115770000	34189000	15229000	18961000	96977000	48925000	48052000	60621000	32141000	28480000	42035000	21760000	20275000	54627	1191	51468	330648;330649;330650;330651;330652;330653;330654	445829;445830;445831;445832;445833;445834;445835;445836	445835	1046		8	
VIGAKKDQYFLDK	3	2 Acetyl (K)	1607.8559	0.85590853	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	2	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	1.13					2	5	10	8	5	7	8	5	10	71.024	60.6	2;3	5.496E-50	6985	160513_QHF_FH_JSI9Kac_3	209.99	162.73			0.96228	0.91497	239.24	29	3	Median	1.068	0.82573	30.912	7	0	Median	0.78148	0.94047	418.32	8	2	Median	0.95371	0.93408	5.9382	5	0	Median	1.0096	1.1119	196.37	9	1	Median	8807800000	4150400000	4657300000	1126300000	551200000	575150000	4739300000	2123600000	2615700000	733510000	343950000	389560000	2208600000	1131700000	1076900000	54628	5479	51469	330655;330656;330657;330658;330659;330660;330661;330662;330663;330664;330665;330666;330667;330668;330669;330670;330671;330672;330673;330674;330675;330676;330677;330678;330679;330680;330681;330682;330683;330684	445837;445838;445839;445840;445841;445842;445843;445844;445845;445846;445847;445848;445849;445850;445851;445852;445853;445854;445855;445856;445857;445858;445859;445860;445861;445862;445863;445864;445865;445866;445867;445868;445869;445870;445871;445872;445873;445874;445875;445876;445877;445878;445879;445880;445881;445882;445883	445852	3442;3443		47	
VIGAKKDQYFLDKK	4	2 Acetyl (K)	1735.9509	0.95087155	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	2	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.678							3	10	7	3	6	4	7	66.925	56.746	2;3	7.9747E-29	30578	160513_QHF_FH_JSI11Kac_6	162.32	113.58			0.91143	0.80509	109.83	20	1	Median	0.93061	0.79663	7.4227	3	0	Median	0.69317	0.79318	68.324	6	0	Median	1.1253	1.0922	17.417	4	0	Median	0.89264	0.94677	181.71	7	1	Median	2645800000	1285700000	1360100000	489800000	199180000	290630000	733350000	398850000	334500000	741330000	362440000	378880000	681360000	325230000	356140000	54629	5479	51470	330685;330686;330687;330688;330689;330690;330691;330692;330693;330694;330695;330696;330697;330698;330699;330700;330701;330702;330703;330704	445884;445885;445886;445887;445888;445889;445890;445891;445892;445893;445894;445895;445896;445897;445898;445899;445900;445901;445902;445903;445904;445905;445906;445907	445889	3442;3443		21	
VIGDTHASEVSQKPNTEK	2	Unmodified	1938.9647	0.96468371	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.75	0.433		1	3								1	3		16.091	15.913	3;4	3.5851E-05	13118	160511_QHF_FH_JSI11i_3	70.942	55.307			0.84662	0.7774	54.769	4	3	Median	NaN	NaN	NaN	0	0	Median	0.36369	0.4663	NaN	1	1	Median	0.98295	0.91428	47.701	3	2	Median	NaN	NaN	NaN	0	0	Median	223280000	111660000	111620000	0	0	0	12448000	10221000	2227100	210830000	101440000	109400000	0	0	0	54630	2899	51471	330705;330706;330707;330708	445908;445909;445910;445911	445908			4	
VIGELVGHTER	0	Unmodified	1208.6513	0.65133548	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	1	3	4	2	27.112	25.743	2;3	0.00037538	21851	160511_QHF_FH_JSI11i_3	66.492	60.851			0.73036	0.73728	108.15	9	7	Median	0.63953	0.54546	NaN	1	0	Median	0.80602	0.99471	132.89	2	2	Median	0.44584	0.43808	135.02	4	3	Median	1.503	1.4971	13.898	2	2	Median	919960000	442460000	477500000	96034000	41669000	54364000	127790000	57375000	70416000	430790000	228650000	202140000	265340000	114770000	150580000	54631	3736	51472	330709;330710;330711;330712;330713;330714;330715;330716;330717;330718	445912;445913;445914;445915;445916;445917;445918;445919;445920;445921;445922	445912			11	
VIGGDDLSTLTGK	1	Unmodified	1274.6718	0.67179615	772	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	57.331	56.63	2	9.718E-07	50417	160511_QHF_FH_JSI9i_1	128.01	88.993			0.844	0.90782	13.849	5	0	Linear	0.88802	0.72234	NaN	1	0	Median	0.64515	0.78741	15.022	2	0	Median	0.99932	0.96823	NaN	1	0	Median	0.844	0.8946	NaN	1	0	Median	3058500000	1628500000	1430000000	656700000	309010000	347690000	777170000	409290000	367880000	881480000	507170000	374300000	743130000	402990000	340140000	54632	772	51473	330719;330720;330721;330722;330723	445923;445924;445925;445926;445927;445928;445929;445930;445931;445932;445933;445934;445935;445936;445937;445938	445937			16	
VIGIDHIK	1	Unmodified	893.53345	0.53345218	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.36	4.78		7	5						2	4	4	3	3	32.226	30.215	2;3	0.00058087	26191	160511_QHF_FH_JSI9i_2	79.906	47.066			0.85359	0.92865	33.029	14	1	Median	1.3701	1.1528	36.399	4	1	Median	0.63724	0.77851	15.24	4	0	Median	0.89902	0.92282	34.459	3	0	Median	0.85977	0.93452	47.897	3	0	Median	2278900000	1129900000	1149100000	475620000	215550000	260060000	485080000	256100000	228980000	910910000	456880000	454030000	407320000	201320000	206000000	54633	1202	51474	330724;330725;330726;330727;330728;330729;330730;330731;330732;330733;330734;330735;330736;330737	445939;445940;445941;445942;445943;445944;445945;445946;445947;445948;445949;445950;445951;445952;445953;445954;445955;445956;445957;445958	445948			20	
VIGIECSSISDYAVK	1	Unmodified	1639.8127	0.81272309	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	67.235	66.462	2	6.2067E-12	60268	160511_QHF_FH_JSI10i_1	112.64	63.455			0.88987	0.93052	17.958	6	1	Median	1.0039	0.84384	NaN	1	0	Median	0.83671	1.0205	NaN	1	0	Median	0.88433	0.86631	2.6734	2	0	Median	1.0665	1.1539	22.994	2	1	Median	439190000	258130000	181060000	22595000	10414000	12181000	39387000	24165000	15222000	218450000	141930000	76520000	158760000	81620000	77138000	54634	4325	51475	330738;330739;330740;330741;330742;330743;330744	445959;445960;445961;445962;445963;445964;445965;445966;445967	445963			9	
VIGILQDGFPIR	0	Unmodified	1326.766	0.76597131	4426	Q9BTX7	TTPAL	Alpha-tocopherol transfer protein-like	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.354	88.243	2	0.0098403	76620	160511_QHF_FH_JSI12i_3	46.891	34.665			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54635	4426	51476	330745	445968	445968			1	
VIGLSSDLQQVGGASAR	0	Unmodified	1656.8795	0.87949752	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.8	9	8	6				3	6		7	7	10	8	62.44	59.037	2;3	2.9581E-52	51009	160511_QHF_FH_JSI12i_3	269.7	222.51			1.0384	1.1037	23.573	30	6	Median	1.5989	1.3332	32.963	6	1	Median	0.91345	1.1317	15.88	7	2	Median	1.0886	1.0605	13.363	10	3	Median	0.97008	1.0314	16.801	7	0	Median	5178900000	2608600000	2570300000	664540000	313830000	350700000	1522600000	753870000	768750000	1719400000	862580000	856850000	1272300000	678330000	593940000	54636	120	51477	330746;330747;330748;330749;330750;330751;330752;330753;330754;330755;330756;330757;330758;330759;330760;330761;330762;330763;330764;330765;330766;330767;330768;330769;330770;330771;330772;330773;330774;330775;330776;330777	445969;445970;445971;445972;445973;445974;445975;445976;445977;445978;445979;445980;445981;445982;445983;445984;445985;445986;445987;445988;445989;445990;445991;445992;445993;445994;445995;445996;445997;445998;445999;446000;446001;446002;446003;446004;446005;446006;446007;446008;446009;446010;446011;446012;446013;446014	446013			45	
VIGMHYFSPVDK	1	Unmodified	1391.6908	0.69075746	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	4	4	4	3	56.818	53.743	2;3	1.0373E-08	28533	160513_QHF_FH_JSI9Kac_6	110.31	97.428			1.0914	1.0493	9.9928	15	0	Median	1.0634	0.85666	11.167	4	0	Linear	0.86478	0.98633	11.826	4	0	Median	1.0743	1.0199	10.937	4	0	Median	1.0932	1.1361	8.1921	3	0	Plateau	8233900000	4036600000	4197300000	1311600000	549410000	762150000	1460100000	697650000	762500000	2307800000	1104400000	1203400000	3154400000	1685100000	1469300000	54637	1507	51478	330778;330779;330780;330781;330782;330783;330784;330785;330786;330787;330788;330789;330790;330791;330792	446015;446016;446017;446018;446019;446020;446021;446022;446023;446024;446025;446026;446027;446028;446029;446030;446031;446032;446033;446034;446035;446036;446037;446038;446039;446040;446041;446042;446043;446044;446045;446046;446047;446048	446040			33	
VIGMHYFSPVDK	1	Oxidation (M)	1407.6857	0.68567208	1507	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	7.33	6.13			4						2	2	2		2	44.545	40.587	2;3	0.00049012	33242	160511_QHF_FH_JSI9i_3	60.157	50.357			0.99348	0.93056	34.03	6	4	Median	1.1135	0.94238	2.9706	2	0	Median	0.86568	1.0027	57.049	2	2	Median	NaN	NaN	NaN	0	0	Median	0.67453	0.72458	36.567	2	2	Median	232350000	116470000	115880000	84400000	34384000	50015000	124170000	69467000	54706000	0	0	0	23774000	12616000	11158000	54638	1507	51478	330793;330794;330795;330796;330797;330798	446049;446050;446051;446052;446053;446054	446051		1187	6	
VIGMPPPVFYWK	1	Unmodified	1432.7577	0.75771481	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		98.591	98.591	2	0.0029454	87731	160511_QHF_FH_JSI11i_3	68.224	53.08			2.0609	1.9602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0609	1.9602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11153000	3275400	7877900	0	0	0	0	0	0	11153000	3275400	7877900	0	0	0	54639	3306	51479	330799	446055	446055			1	
VIGMSVYYPQVR	0	Unmodified	1410.733	0.73295662	625	O94915	FRYL	Protein furry homolog-like	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			72.38	64.914	2	0.00067661	35661	160513_QHF_FH_JSI10Kac_6	88.177	70.009			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54640	625	51480	330800	446056	446056			1	
VIGNGSFGVVYQAK	1	Unmodified	1437.7616	0.76161421	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		66.045	56.406	2	0.0074343	30575	160513_QHF_FH_JSI11Kac_6	57.532	40.861			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54641	1689	51481	330801	446057	446057			1	
VIGNQSLVNELAFTAR	0	Unmodified	1730.9315	0.93153309	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	2.92	8	8	7						1	3	7	8	6	81.29	80.353	2;3	9.8617E-52	72094	160511_QHF_FH_JSI11i_3	250.8	146			0.97257	1.029	36.871	24	6	Median	1.3407	1.1346	4.0634	3	0	Median	0.88435	1.0692	61.298	7	3	Median	0.97381	0.97308	22.258	8	3	Median	0.83992	0.93426	22.931	6	0	Median	5821100000	2726100000	3095000000	860270000	394200000	466070000	1033800000	526340000	507440000	2362500000	1070800000	1291600000	1564600000	734720000	829860000	54642	2340	51482	330802;330803;330804;330805;330806;330807;330808;330809;330810;330811;330812;330813;330814;330815;330816;330817;330818;330819;330820;330821;330822;330823;330824;330825	446058;446059;446060;446061;446062;446063;446064;446065;446066;446067;446068;446069;446070;446071;446072;446073;446074;446075;446076;446077;446078;446079;446080;446081;446082;446083;446084;446085;446086;446087;446088;446089;446090;446091;446092;446093;446094;446095;446096;446097;446098;446099	446058			42	
VIGPFYEIVEDKK	2	Unmodified	1535.8235	0.82354577	2955	Q5T8D3	ACBD5	Acyl-CoA-binding domain-containing protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	71.965	71.46	3	1.4111E-05	61873	160511_QHF_FH_JSI12i_3	108.17	100.8			0.96876	0.97812	11.913	5	0	Median	1.3643	1.1965	NaN	1	0	Median	0.70806	0.87434	NaN	1	0	Median	0.99985	0.96208	6.0424	2	0	Median	0.96876	0.97812	NaN	1	0	Median	263080000	138630000	124450000	17912000	10835000	7076900	29195000	15266000	13930000	95653000	54034000	41618000	120320000	58496000	61828000	54643	2955	51483	330826;330827;330828;330829;330830	446100;446101;446102;446103;446104;446105;446106;446107	446107			8	
VIGQDSSEIHFK	1	Unmodified	1358.683	0.68302954	2053	P63165;G2XKQ0	SUMO1	Small ubiquitin-related modifier 1;Small ubiquitin-related modifier	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.85		8	5					3	2	4	2	8	4	39.35	35.95	2;3	2.9259E-07	30633	160511_QHF_FH_JSI12i_2	128.81	86.62			1.0331	1.0383	19.982	17	2	Median	1.2654	1.0514	18.388	4	0	Median	0.73822	0.90548	2.0649	2	0	Median	1.0191	1.0161	25.264	7	1	Median	1.0545	1.113	14.285	4	1	Median	3388600000	1756200000	1632500000	526170000	257540000	268630000	741850000	413860000	327990000	1253700000	632830000	620880000	866870000	451920000	414950000	54644	2053	51484	330831;330832;330833;330834;330835;330836;330837;330838;330839;330840;330841;330842;330843;330844;330845;330846;330847;330848	446108;446109;446110;446111;446112;446113;446114;446115;446116;446117;446118;446119;446120;446121;446122;446123;446124;446125;446126;446127;446128;446129	446113			22	
VIGQLLLHTVK	1	Unmodified	1219.7652	0.76524303	3608	Q8NC42	RNF149	E3 ubiquitin-protein ligase RNF149	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			3								2		1	58.356	57.461	3	0.0011198	48236	160511_QHF_FH_JSI10i_3	57.802	54.377			0.57427	0.60672	51.372	2	2	Median	NaN	NaN	NaN	0	0	Median	0.79261	0.87247	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.41608	0.42192	NaN	1	1	Median	76303000	47813000	28491000	0	0	0	29980000	18653000	11327000	0	0	0	46324000	29160000	17164000	54645	3608	51485	330849;330850;330851	446130;446131;446132	446131			3	
VIGSELVQK	1	Unmodified	971.56515	0.56514624	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	5.19	3	4					2			2	3	3	1	36.862	33.984	2	0.00041219	29023	160511_QHF_FH_JSI11i_2	81.191	30.559			0.92149	0.95475	14.479	9	0	Median	0.97383	0.80651	22.376	2	0	Median	0.8842	1.0522	8.5703	3	0	Plateau	0.94634	0.95475	12.171	3	0	Median	0.96622	1.0567	NaN	1	0	Median	1587100000	810230000	776850000	347090000	160150000	186940000	419180000	217940000	201250000	595560000	306320000	289240000	225250000	125820000	99429000	54646	1449	51486	330852;330853;330854;330855;330856;330857;330858;330859;330860	446133;446134;446135;446136;446137;446138;446139;446140;446141;446142;446143;446144;446145;446146;446147	446145			15	
VIGSGCNLDSAR	0	Unmodified	1247.5928	0.59283433	761;864	P00338;P07195	LDHA;LDHB	L-lactate dehydrogenase A chain;L-lactate dehydrogenase B chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.84	6.23	5	4	4			4	3	3	2	6	5	6	8	26.344	21.334	2	5.2382E-12	13144	160513_QHF_FH_JSI10Kac_4	121.83	90.756			1.0633	1.0911	24.041	25	2	Median	1.4306	1.1956	8.2918	6	0	Median	0.79689	0.9568	6.4233	5	0	Median	0.81057	0.79995	4.2451	6	0	Median	1.2626	1.3712	19.472	8	2	Median	32401000000	16671000000	15730000000	4203500000	1666900000	2536600000	6915200000	3879500000	3035700000	10245000000	5889800000	4355200000	11037000000	5234800000	5802400000	54647	761;864	51487	330861;330862;330863;330864;330865;330866;330867;330868;330869;330870;330871;330872;330873;330874;330875;330876;330877;330878;330879;330880;330881;330882;330883;330884;330885	446148;446149;446150;446151;446152;446153;446154;446155;446156;446157;446158;446159;446160;446161;446162;446163;446164;446165;446166;446167;446168;446169;446170;446171;446172;446173;446174;446175;446176;446177;446178;446179	446157			32	
VIGSNFAPTVERDEFLVAEK	1	Unmodified	2220.1426	0.14264808	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			77.137	76.398	3	0.02457	67309	160511_QHF_FH_JSI9i_2	29.126	19.842			0.7312	0.74963	3.2925	2	0	Median	0.88977	0.76729	NaN	1	0	Median	0.60089	0.73238	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135160000	84793000	50366000	58929000	34859000	24070000	76230000	49935000	26295000	0	0	0	0	0	0	54648	4018	51488	330886;330887	446180;446181	446180			2	
VIGTLLGTVDK	1	Unmodified	1114.6598	0.65977491	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	5.38	4	5	4					1	2	4	5	4	3	62.206	59.676	2	6.7718E-13	52299	160511_QHF_FH_JSI9i_2	143.89	93.283			1.0701	1.0011	64.554	15	11	Median	1.1889	1.0031	46.477	4	2	Median	0.53135	0.64655	77.586	5	5	Median	1.4674	1.4413	70.642	4	3	Median	1.4544	1.5645	78.736	2	1	Median	4777700000	2274300000	2503400000	641810000	292610000	349200000	1467200000	833600000	633610000	1496000000	706360000	789610000	1172700000	441690000	730980000	54649	120	51489	330888;330889;330890;330891;330892;330893;330894;330895;330896;330897;330898;330899;330900;330901;330902;330903	446182;446183;446184;446185;446186;446187;446188;446189;446190;446191;446192;446193;446194;446195;446196;446197;446198;446199;446200	446193			19	
VIGVLEPLDPEDYTK	1	Unmodified	1686.8716	0.87161817	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	87.641	87.263	2	1.1601E-06	79192	160511_QHF_FH_JSI10i_1	143.97	117.3			1.0251	1.0332	4.8733	5	2	Median	1.1595	0.95207	NaN	1	0	Median	0.88418	1.0343	5.6361	2	2	Median	1.0676	1.0332	NaN	1	0	Median	1.0251	1.0532	NaN	1	0	Median	622390000	302170000	320220000	107790000	44138000	63650000	239580000	127840000	111740000	147300000	63021000	84276000	127720000	67172000	60549000	54650	4221	51490	330904;330905;330906;330907;330908	446201;446202;446203;446204;446205;446206;446207;446208;446209;446210	446207			10	
VIHAIANSGK	1	Unmodified	1008.5716	0.5716286	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	2	1	10.716	10.345	2;3	1.1269E-05	7585	160511_QHF_FH_JSI12i_3	103.8	43.122			1.0002	0.92749	25.675	7	2	Median	1.2607	1.0182	13.199	2	0	Median	0.73651	0.87198	6.5168	2	1	Median	1.0714	1.0041	58.637	2	1	Median	1.0002	0.98833	NaN	1	0	Median	971340000	448180000	523160000	297490000	106010000	191480000	272930000	155540000	117400000	274670000	129630000	145040000	126250000	57000000	69246000	54651	695	51491	330909;330910;330911;330912;330913;330914;330915	446211;446212;446213;446214;446215;446216;446217;446218;446219	446218			9	
VIHDNFGIVEGLMTTVHAITATQK	1	Oxidation (M)	2610.3476	0.34757225	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	4.86	3	6	34						8	21	13	9	8	101.17	99.747	2;3;4	2.9588E-129	45911	160513_QHF_FH_JSI10Kac_6	249.78	229.62			1.0633	0.96776	19.495	51	16	Median	1.1582	1.0024	10.993	21	6	Median	0.73611	0.78753	27.853	13	3	Median	1.0202	0.96244	16.173	9	4	Median	0.94845	0.99658	14.24	8	3	Median	69760000000	36529000000	33231000000	21218000000	9362700000	11855000000	22679000000	13559000000	9119700000	9468800000	4283000000	5185900000	16395000000	9323800000	7070700000	54652	812	51492	330916;330917;330918;330919;330920;330921;330922;330923;330924;330925;330926;330927;330928;330929;330930;330931;330932;330933;330934;330935;330936;330937;330938;330939;330940;330941;330942;330943;330944;330945;330946;330947;330948;330949;330950;330951;330952;330953;330954;330955;330956;330957;330958;330959;330960;330961;330962;330963;330964;330965;330966	446220;446221;446222;446223;446224;446225;446226;446227;446228;446229;446230;446231;446232;446233;446234;446235;446236;446237;446238;446239;446240;446241;446242;446243;446244;446245;446246;446247;446248;446249;446250;446251;446252;446253;446254;446255;446256;446257;446258;446259;446260;446261;446262;446263;446264;446265;446266;446267;446268;446269;446270;446271;446272;446273;446274;446275;446276;446277;446278;446279;446280;446281;446282;446283;446284;446285;446286;446287;446288;446289;446290;446291;446292;446293;446294;446295;446296;446297;446298;446299;446300;446301;446302	446300		336	82	
VIHDNFGIVEGLMTTVHAITATQK	1	Unmodified	2594.3527	0.35265763	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.61	2.89	4	11	301						17	93	88	59	93	108.03	107.48	2;3;4;5	0	88295	160511_QHF_FH_JSI12i_3	630.75	611.47			0.94259	0.93179	17.281	326	83	Median	1.1806	0.98491	15.825	90	19	Median	0.72254	0.82825	15.322	87	23	Median	0.98755	0.95206	19.174	59	16	Median	0.91575	0.95367	13.148	90	25	Median	377530000000	188450000000	189080000000	88506000000	41328000000	47178000000	60155000000	34355000000	25800000000	70152000000	34074000000	36078000000	158710000000	78692000000	80020000000	54653	812	51492	330967;330968;330969;330970;330971;330972;330973;330974;330975;330976;330977;330978;330979;330980;330981;330982;330983;330984;330985;330986;330987;330988;330989;330990;330991;330992;330993;330994;330995;330996;330997;330998;330999;331000;331001;331002;331003;331004;331005;331006;331007;331008;331009;331010;331011;331012;331013;331014;331015;331016;331017;331018;331019;331020;331021;331022;331023;331024;331025;331026;331027;331028;331029;331030;331031;331032;331033;331034;331035;331036;331037;331038;331039;331040;331041;331042;331043;331044;331045;331046;331047;331048;331049;331050;331051;331052;331053;331054;331055;331056;331057;331058;331059;331060;331061;331062;331063;331064;331065;331066;331067;331068;331069;331070;331071;331072;331073;331074;331075;331076;331077;331078;331079;331080;331081;331082;331083;331084;331085;331086;331087;331088;331089;331090;331091;331092;331093;331094;331095;331096;331097;331098;331099;331100;331101;331102;331103;331104;331105;331106;331107;331108;331109;331110;331111;331112;331113;331114;331115;331116;331117;331118;331119;331120;331121;331122;331123;331124;331125;331126;331127;331128;331129;331130;331131;331132;331133;331134;331135;331136;331137;331138;331139;331140;331141;331142;331143;331144;331145;331146;331147;331148;331149;331150;331151;331152;331153;331154;331155;331156;331157;331158;331159;331160;331161;331162;331163;331164;331165;331166;331167;331168;331169;331170;331171;331172;331173;331174;331175;331176;331177;331178;331179;331180;331181;331182;331183;331184;331185;331186;331187;331188;331189;331190;331191;331192;331193;331194;331195;331196;331197;331198;331199;331200;331201;331202;331203;331204;331205;331206;331207;331208;331209;331210;331211;331212;331213;331214;331215;331216;331217;331218;331219;331220;331221;331222;331223;331224;331225;331226;331227;331228;331229;331230;331231;331232;331233;331234;331235;331236;331237;331238;331239;331240;331241;331242;331243;331244;331245;331246;331247;331248;331249;331250;331251;331252;331253;331254;331255;331256;331257;331258;331259;331260;331261;331262;331263;331264;331265;331266;331267;331268;331269;331270;331271;331272;331273;331274;331275;331276;331277;331278;331279;331280;331281;331282;331283;331284;331285;331286;331287;331288;331289;331290;331291;331292;331293;331294;331295;331296;331297;331298;331299	446303;446304;446305;446306;446307;446308;446309;446310;446311;446312;446313;446314;446315;446316;446317;446318;446319;446320;446321;446322;446323;446324;446325;446326;446327;446328;446329;446330;446331;446332;446333;446334;446335;446336;446337;446338;446339;446340;446341;446342;446343;446344;446345;446346;446347;446348;446349;446350;446351;446352;446353;446354;446355;446356;446357;446358;446359;446360;446361;446362;446363;446364;446365;446366;446367;446368;446369;446370;446371;446372;446373;446374;446375;446376;446377;446378;446379;446380;446381;446382;446383;446384;446385;446386;446387;446388;446389;446390;446391;446392;446393;446394;446395;446396;446397;446398;446399;446400;446401;446402;446403;446404;446405;446406;446407;446408;446409;446410;446411;446412;446413;446414;446415;446416;446417;446418;446419;446420;446421;446422;446423;446424;446425;446426;446427;446428;446429;446430;446431;446432;446433;446434;446435;446436;446437;446438;446439;446440;446441;446442;446443;446444;446445;446446;446447;446448;446449;446450;446451;446452;446453;446454;446455;446456;446457;446458;446459;446460;446461;446462;446463;446464;446465;446466;446467;446468;446469;446470;446471;446472;446473;446474;446475;446476;446477;446478;446479;446480;446481;446482;446483;446484;446485;446486;446487;446488;446489;446490;446491;446492;446493;446494;446495;446496;446497;446498;446499;446500;446501;446502;446503;446504;446505;446506;446507;446508;446509;446510;446511;446512;446513;446514;446515;446516;446517;446518;446519;446520;446521;446522;446523;446524;446525;446526;446527;446528;446529;446530;446531;446532;446533;446534;446535;446536;446537;446538;446539;446540;446541;446542;446543;446544;446545;446546;446547;446548;446549;446550;446551;446552;446553;446554;446555;446556;446557;446558;446559;446560;446561;446562;446563;446564;446565;446566;446567;446568;446569;446570;446571;446572;446573;446574;446575;446576;446577;446578;446579;446580;446581;446582;446583;446584;446585;446586;446587;446588;446589;446590;446591;446592;446593;446594;446595;446596;446597;446598;446599;446600;446601;446602;446603;446604;446605;446606;446607;446608;446609;446610;446611;446612;446613;446614;446615;446616;446617;446618;446619;446620;446621;446622;446623;446624;446625;446626;446627;446628;446629;446630;446631;446632;446633;446634;446635;446636;446637;446638;446639;446640;446641;446642;446643;446644;446645;446646;446647;446648;446649;446650;446651;446652	446539			336	
VIHDNFGIVEGLMTTVHAITATQKTVDGPSGK	2	Acetyl (K)	3377.7289	0.72894046	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	96.427	87.006	4	6.2132E-21	49407	160513_QHF_FH_JSI11Kac_6	105.98	91.28			0.72439	0.72008	45.629	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55465	0.52151	NaN	1	0	Median	0.94608	0.99427	NaN	1	0	Median	551200000	356360000	194840000	0	0	0	0	0	0	353840000	237500000	116340000	197360000	118860000	78498000	54654	812	51493	331300;331301	446653	446653	454;456		1	
VIHGVINSFVHVEQYK	1	Unmodified	1867.9945	0.9944677	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	3	2	2	3	64.485	60.392	3;4	0.00013807	50665	160511_QHF_FH_JSI9i_3	66.022	55.922			0.94032	0.9208	19.379	10	1	Median	1.432	1.1441	20.057	3	0	Median	0.67575	0.78455	0.56019	2	0	Median	1.1259	1.0546	2.9899	2	0	Median	0.79632	0.79976	6.2168	3	1	Plateau	509020000	224180000	284840000	117070000	49868000	67199000	95466000	48757000	46709000	114300000	46507000	67792000	182190000	79044000	103140000	54655	2454	51494	331302;331303;331304;331305;331306;331307;331308;331309;331310;331311	446654;446655;446656;446657;446658;446659;446660;446661;446662;446663;446664;446665	446660			12	
VIHLAGQWEK	1	Unmodified	1179.64	0.64004252	450	O60826	CCDC22	Coiled-coil domain-containing protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	39.608	38.824	2;3	3.0077E-06	31846	160511_QHF_FH_JSI9i_3	102.52	92			1.0728	0.95245	13.608	6	1	Median	1.167	0.94742	1.2718	2	0	Median	0.79814	0.96932	NaN	1	0	Median	0.91708	0.86291	13.44	2	0	Median	1.1918	1.2037	NaN	1	1	Median	426530000	214940000	211590000	79827000	36072000	43756000	82905000	46253000	36652000	208270000	101590000	106680000	55521000	31023000	24497000	54656	450	51495	331312;331313;331314;331315;331316;331317	446666;446667;446668;446669;446670;446671;446672;446673;446674;446675	446673			10	
VIHLSLAPK	1	Unmodified	976.60695	0.60695147	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	42.076	41.108	3	1.6628E-05	35810	160511_QHF_FH_JSI11i_3	96.331	87.468			1.4146	1.1469	59.003	5	2	Median	1.4146	1.1469	NaN	1	0	Median	1.2145	1.3773	113.05	2	2	Median	1.7616	1.6814	NaN	1	0	Median	1.0938	1.1021	NaN	1	0	Median	314950000	112770000	202180000	36093000	13705000	22388000	75784000	31718000	44066000	82322000	31258000	51064000	120750000	36092000	84658000	54657	2564	51496	331318;331319;331320;331321;331322	446676;446677;446678;446679;446680;446681;446682;446683	446676			8	
VIHLSNLPHSGYSDSAVLK	1	Unmodified	2036.0691	0.069089203	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.31		4	13						9	8	7	5	6	58.554	54.746	2;3;4	1.2748E-42	45260	160511_QHF_FH_JSI9i_3	178.06	169.12			0.84903	0.87426	29.4	26	7	Median	0.91448	0.77541	47.44	8	3	Median	0.79801	0.97809	16.024	7	1	Median	1.0194	1.0362	15.615	5	1	Linear	0.77937	0.82044	20.985	6	2	Median	15862000000	7942500000	7919100000	2285900000	920740000	1365200000	2785200000	1489800000	1295400000	5030900000	2229600000	2801300000	5759500000	3302300000	2457200000	54658	1556	51497	331323;331324;331325;331326;331327;331328;331329;331330;331331;331332;331333;331334;331335;331336;331337;331338;331339;331340;331341;331342;331343;331344;331345;331346;331347;331348	446684;446685;446686;446687;446688;446689;446690;446691;446692;446693;446694;446695;446696;446697;446698;446699;446700;446701;446702;446703;446704;446705;446706;446707;446708;446709;446710;446711;446712;446713;446714;446715;446716;446717;446718;446719;446720;446721;446722;446723;446724;446725;446726;446727;446728;446729;446730;446731;446732;446733;446734;446735;446736;446737;446738;446739;446740;446741;446742;446743;446744;446745;446746;446747	446715			64	
VIHNASIMNAVGCCGLQLYK	1	Unmodified	2247.0962	0.096248706	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	73.318	72.491	3	2.4611E-14	62770	160511_QHF_FH_JSI12i_3	135.09	125.92			0.87171	0.87615	19.588	6	4	Median	1.0872	0.89681	33.136	2	2	Median	0.87987	1.0177	NaN	1	0	Median	0.80772	0.75703	NaN	1	0	Median	0.87596	0.87615	19.39	2	2	Median	297170000	163710000	133460000	39038000	17765000	21272000	32552000	20128000	12424000	119140000	73151000	45986000	106440000	52665000	53774000	54659	4680	51498	331349;331350;331351;331352;331353;331354	446748;446749;446750;446751;446752;446753;446754;446755;446756	446755			9	
VIHSELQGGNK	1	Unmodified	1180.62	0.62003536	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.34		7	5					1	5	4	3	6	5	11.539	8.6332	2;3	2.0197E-06	7780	160511_QHF_FH_JSI10i_2	98.04	88.153			1.0557	1.086	36.927	18	8	Median	1.4755	1.2783	42.894	4	2	Median	0.97744	1.1811	32.562	3	1	Median	1.2807	1.2851	22.662	6	2	Median	0.82072	0.83725	46.198	5	3	Median	2260400000	1096100000	1164300000	205900000	94927000	110970000	327590000	159580000	168000000	692880000	325880000	367000000	1034000000	515710000	518340000	54660	3173	51499	331355;331356;331357;331358;331359;331360;331361;331362;331363;331364;331365;331366;331367;331368;331369;331370;331371;331372	446757;446758;446759;446760;446761;446762;446763;446764;446765;446766;446767;446768;446769;446770;446771;446772;446773;446774;446775;446776;446777;446778	446770			22	
VIHSILNSPYAK	1	Unmodified	1340.7452	0.74523587	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	3	2	1	1	45.432	42.216	2;3	1.8908E-11	35210	160511_QHF_FH_JSI10i_3	126.19	114.33			1.1861	0.9673	47.273	5	2	Median	1.1861	0.9673	59.566	3	1	Median	0.69963	0.81652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3784	1.496	NaN	1	1	Median	686410000	335110000	351300000	368630000	189080000	179560000	312620000	144000000	168620000	0	0	0	5160800	2031700	3129100	54661	1223	51500	331373;331374;331375;331376;331377;331378;331379	446779;446780;446781;446782;446783;446784;446785;446786;446787;446788	446780			10	
VIHVAGK	1	Unmodified	722.44391	0.44390889	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		9.1488	9.1488	2	0.022022	6809	160511_QHF_FH_JSI11i_3	59.641	37.019			0.22173	0.21084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22173	0.21084	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	290290000	237070000	53221000	0	0	0	0	0	0	290290000	237070000	53221000	0	0	0	54662	5227	51501	331380	446789	446789			1	
VIHVESGK	1	Unmodified	867.48142	0.48141661	1737	P51532	SMARCA4	Transcription activator BRG1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1		1	5	2	8.7188	7.3778	2;3	0.0092645	5849	160511_QHF_FH_JSI11i_3	47.603	28.509			1.7648	1.844	49.243	8	3	Median	NaN	NaN	NaN	0	0	Median	1.4852	1.8372	NaN	1	0	Median	2.1171	2.0988	62.758	5	3	Median	1.3151	1.3946	26.424	2	0	Median	717870000	336780000	381080000	0	0	0	113070000	42895000	70177000	393330000	193890000	199430000	211470000	99996000	111470000	54663	1737	51502	331381;331382;331383;331384;331385;331386;331387;331388	446790;446791;446792;446793;446794;446795	446791			4	
VIHVVTSEMDNYEPGVYTEK	1	Oxidation (M)	2325.0835	0.083478218	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	50.778	50.66	3	4.9152E-12	43323	160511_QHF_FH_JSI12i_3	139.11	130.72			1.0407	1.0181	10.951	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99033	0.94222	NaN	1	0	Median	1.0936	1.1	NaN	1	0	Median	161090000	84935000	76152000	0	0	0	0	0	0	54221000	30655000	23565000	106870000	54280000	52587000	54664	1421	51503	331389;331390;331391	446796;446797;446798;446799;446800;446801;446802;446803;446804;446805	446804		1080	10	
VIHVVTSEMDNYEPGVYTEK	1	Unmodified	2309.0886	0.088563596	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.99		8	6						5	5	5	5	4	63.505	60.787	2;3	2.976E-83	54113	160511_QHF_FH_JSI11i_3	306.69	293.01			0.85237	0.9054	26.984	16	6	Median	0.82601	0.71047	31.539	4	3	Median	0.75299	0.93298	3.707	3	1	Median	0.9575	0.96763	24.721	5	1	Median	0.97843	1.0368	21.049	4	1	Median	3025500000	1430000000	1595500000	350220000	167480000	182740000	474580000	224770000	249810000	1034900000	484250000	550660000	1165800000	553510000	612310000	54665	1421	51503	331392;331393;331394;331395;331396;331397;331398;331399;331400;331401;331402;331403;331404;331405;331406;331407;331408;331409;331410	446806;446807;446808;446809;446810;446811;446812;446813;446814;446815;446816;446817;446818;446819;446820;446821;446822;446823;446824;446825;446826;446827;446828;446829;446830;446831;446832;446833;446834;446835;446836;446837;446838	446809			33	
VIIEKYYTR	1	Acetyl (K)	1225.6707	0.67067394	914	P08708	RPS17	40S ribosomal protein S17	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	60.724	49.989	2	0.0031487	25466	160513_QHF_FH_JSI12Kac_5	80.688	52.946			0.5505	0.62805	156.18	4	1	Median	12.798	10.867	NaN	1	1	Median	0.60083	0.72045	NaN	1	0	Median	0.34278	0.33604	NaN	1	0	Median	0.50439	0.5475	NaN	1	0	Median	210290000	137090000	73196000	8502500	671230	7831300	48305000	32682000	15623000	124110000	84024000	40086000	29372000	19716000	9656000	54666	914	51504	331411;331412;331413;331414	446839;446840	446840	667		2	
VIIIGSGVSGLAAAR	0	Unmodified	1382.8245	0.82454882	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	3	3	2	1	72.479	69.237	2	1.2885E-06	37552	160513_QHF_FH_JSI10Kac_6	108.37	61.481			0.95693	1.0044	12.687	9	0	Median	1.29	1.0435	16.061	3	0	Median	0.7384	0.85669	13.933	3	0	Plateau	1.1188	1.0542	6.8506	2	0	Median	0.81294	0.847	NaN	1	0	Median	378780000	197000000	181780000	105450000	45834000	59616000	172960000	98045000	74917000	62080000	30403000	31677000	38292000	22720000	15572000	54667	412	51505	331415;331416;331417;331418;331419;331420;331421;331422;331423	446841;446842;446843;446844;446845;446846;446847;446848;446849;446850;446851;446852;446853;446854;446855;446856;446857;446858	446858			18	
VIILGDSGVGK	1	Unmodified	1056.6179	0.61791009	1728	P51149	RAB7A	Ras-related protein Rab-7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23	4	4	4			2	2	6		4	5	6	7	54.473	49.525	2	3.9292E-09	26794	160513_QHF_FH_JSI10Kac_4	120.12	70.701			0.87669	0.9511	52.228	21	3	Median	1.0301	0.85202	15.137	4	0	Median	0.84856	0.99971	9.7734	5	0	Median	0.91196	0.89082	88.862	6	2	Median	0.85559	0.95591	22.866	6	1	Median	5805600000	2867100000	2938400000	1174700000	499570000	675120000	1325600000	687160000	638450000	1844800000	941570000	903190000	1460500000	738820000	721680000	54668	1728	51506	331424;331425;331426;331427;331428;331429;331430;331431;331432;331433;331434;331435;331436;331437;331438;331439;331440;331441;331442;331443;331444;331445	446859;446860;446861;446862;446863;446864;446865;446866;446867;446868;446869;446870;446871;446872;446873;446874;446875;446876;446877;446878;446879;446880;446881;446882;446883;446884;446885;446886;446887;446888;446889;446890;446891;446892;446893;446894	446871			36	
VIILMLTNQTVHR	0	Oxidation (M)	1552.8759	0.87593247	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									3	1	2			67.282	59.11	3	2.4763E-07	31287	160513_QHF_FH_JSI9Kac_6	132.86	120.7			0.95139	1.1044	41.555	3	3	Median	0.65851	0.55191	NaN	1	1	Median	0.97272	1.1321	3.5079	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	566550000	299820000	266730000	178780000	103880000	74899000	387770000	195930000	191830000	0	0	0	0	0	0	54669	2303	51507	331446;331447;331448	446895;446896;446897	446895		1903	3	
VIILSLDRSDEDK	1	Unmodified	1501.7988	0.79878758	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								2	2	2	54.541	53.999	2;3	0.0010766	46274	160511_QHF_FH_JSI12i_3	73.499	40.553			1.2515	1.1849	27.315	5	1	Median	NaN	NaN	NaN	0	0	Median	0.86654	1.0205	21.129	2	0	Median	1.4991	1.3866	27.17	2	0	Median	1.639	1.651	NaN	1	1	Median	511640000	234680000	276960000	0	0	0	105930000	55525000	50400000	255570000	129400000	126170000	150150000	49749000	100400000	54670	2084	51508	331449;331450;331451;331452;331453;331454	446898;446899;446900;446901;446902;446903	446903			6	
VIIMILNGEK	1	Oxidation (M)	1144.6526	0.65258104	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	15.2	0.433								3	1	1	1		2	71.613	61.236	2	0.00011797	31806	160513_QHF_FH_JSI9Kac_5	97.635	44.465			1.1503	1.3047	50.305	4	1	Median	0.61941	0.52198	NaN	1	0	Median	0.96141	1.1429	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3869	1.5125	2.1743	2	1	Median	51239000	23595000	27644000	15424000	9583500	5840200	9377700	4284900	5092800	0	0	0	26438000	9726900	16711000	54671	1804	51509	331455;331456;331457;331458	446904;446905;446906;446907	446904		1492	4	
VIIMILNGEK	1	Unmodified	1128.6577	0.65766642	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	77.358	68.54	2	0.00071258	37145	160513_QHF_FH_JSI11Kac_6	87.308	76.5			1.0939	1.1784	39.165	5	0	Median	0.76071	0.64479	2.5224	2	0	Median	1.0939	1.3079	NaN	1	0	Median	1.2859	1.1784	NaN	1	0	Median	1.3508	1.4345	NaN	1	0	Median	326550000	171450000	155100000	83742000	47436000	36307000	155430000	81644000	73787000	57057000	29640000	27416000	30319000	12726000	17593000	54672	1804	51509	331459;331460;331461;331462;331463	446908;446909;446910;446911	446908			4	
VIISAPSADAPMFVMGVNHEK	1	2 Oxidation (M)	2244.0919	0.091874835	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.46		3	4					3	3	4	3	3	3	68.998	63.949	3	1.3261E-13	55533	160511_QHF_FH_JSI12i_3	124.69	115.87			0.84865	0.86846	18.414	13	3	Median	0.7583	0.94093	23.826	4	1	Linear	0.67541	0.80055	21.682	3	1	Median	0.84865	0.81248	13.241	3	0	Median	0.90388	0.97098	9.2279	3	1	Median	1946400000	1050600000	895810000	254740000	128810000	125930000	248390000	157790000	90601000	692000000	363040000	328950000	751280000	400950000	350330000	54673	812	51510	331464;331465;331466;331467;331468;331469;331470;331471;331472;331473;331474;331475;331476	446912;446913;446914;446915;446916;446917;446918;446919;446920;446921;446922;446923;446924;446925;446926;446927;446928;446929;446930;446931;446932;446933;446934	446932		332;333	23	
VIISAPSADAPMFVMGVNHEK	1	Oxidation (M)	2228.097	0.096960213	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.81	2	5	9						5	4	7	5	5	73.873	71.285	3	1.3882E-37	36420	160513_QHF_FH_JSI9Kac_6	171.07	151.51			0.83397	0.88625	13.355	20	1	Median	1.3065	1.0778	5.1328	4	0	Median	0.75799	0.88625	8.3812	6	0	Median	0.8321	0.80217	6.1307	5	1	Median	0.86202	0.97411	14.685	5	0	Median	9148700000	4496700000	4652000000	592040000	249460000	342580000	926840000	537150000	389700000	3639200000	1884000000	1755100000	3990600000	1826100000	2164500000	54674	812	51510	331477;331478;331479;331480;331481;331482;331483;331484;331485;331486;331487;331488;331489;331490;331491;331492;331493;331494;331495;331496;331497	446935;446936;446937;446938;446939;446940;446941;446942;446943;446944;446945;446946;446947;446948;446949;446950;446951;446952;446953;446954;446955;446956;446957;446958;446959;446960;446961;446962;446963;446964;446965;446966;446967;446968;446969;446970;446971;446972;446973;446974;446975;446976;446977;446978;446979	446970		332;333	44	
VIISAPSADAPMFVMGVNHEK	1	Unmodified	2212.102	0.10204559	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.01	3	13	11						5	6	6	10	10	82.122	80.373	2;3;4	6.1796E-89	39781	160513_QHF_FH_JSI11Kac_6	218.72	203.13			0.88654	0.93106	23.64	32	10	Median	1.2544	1.0672	21.151	6	1	Median	0.71115	0.83535	11.475	6	1	Median	0.74113	0.76124	21.126	10	4	Median	0.97311	1.0071	16.298	10	4	Median	47172000000	23443000000	23728000000	4610800000	1815200000	2795600000	7382700000	4378200000	3004500000	12352000000	7649300000	4702200000	22827000000	9600800000	13226000000	54675	812	51510	331498;331499;331500;331501;331502;331503;331504;331505;331506;331507;331508;331509;331510;331511;331512;331513;331514;331515;331516;331517;331518;331519;331520;331521;331522;331523;331524;331525;331526;331527;331528;331529	446980;446981;446982;446983;446984;446985;446986;446987;446988;446989;446990;446991;446992;446993;446994;446995;446996;446997;446998;446999;447000;447001;447002;447003;447004;447005;447006;447007;447008;447009;447010;447011;447012;447013;447014;447015;447016;447017;447018;447019;447020;447021;447022;447023;447024;447025;447026;447027;447028;447029;447030;447031;447032;447033;447034;447035;447036;447037;447038;447039;447040;447041;447042;447043;447044;447045;447046;447047;447048;447049;447050;447051;447052;447053;447054;447055;447056;447057;447058;447059	447007			80	
VIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K)	2974.4569	0.4568647	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.896	76.577	3	1.7903E-116	42467	160513_QHF_FH_JSI11Kac_6	242.05	220.92			0.2189	0.20708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2189	0.20708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	855270000	728010000	127270000	0	0	0	0	0	0	855270000	728010000	127270000	0	0	0	54676	812	51511	331530	447060;447061	447061	453		2	
VIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K);Oxidation (M)	2990.4518	0.45177932	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	1	1			By MS/MS		16	0									1			1		82.184	72.869	3	1.7812E-08	40048	160513_QHF_FH_JSI11Kac_6	102.27	91.363			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60235000	60235000	0	0	0	0	0	0	0	60235000	60235000	0	0	0	0	54677	812	51511	331531	447062	447062	453	332;333	1	
VIISAPSADAPMFVMGVNHEKYDNSLK	2	Acetyl (K);2 Oxidation (M)	3006.4467	0.44669395	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	2	1			By MS/MS		15	0								1				1		79.969	69.401	3	0.030034	36805	160513_QHF_FH_JSI11Kac_5	34.106	16.312			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2398000	2398000	0	0	0	0	0	0	0	2398000	2398000	0	0	0	0	54678	812	51511	331532	447063	447063	453	332;333	1	
VIISNSAYGK	1	Unmodified	1050.571	0.5709599	385	O43824	GTPBP6	Putative GTP-binding protein 6	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			92.411	92.377	2	0.015742	83584	160511_QHF_FH_JSI10i_1	51.059	17.056			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10268000	10268000	0	0	0	0	10268000	10268000	0	0	0	0	0	0	0	54679	385	51512	331533	447064	447064			1	
VIITGDAFVPGER	0	Unmodified	1372.7351	0.73506511	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	64.918	64.127	2	0.00021436	55895	160511_QHF_FH_JSI11i_2	79.659	57.573			0.917	0.91521	15.908	5	1	Median	1.0642	0.93897	NaN	1	0	Median	0.64951	0.77253	2.6537	2	1	Median	0.917	0.91521	NaN	1	0	Median	1.042	1.1302	NaN	1	0	Median	164940000	92785000	72155000	27700000	12280000	15420000	46580000	32003000	14578000	51092000	28393000	22700000	39568000	20110000	19458000	54680	3154	51513	331534;331535;331536;331537;331538	447065;447066;447067;447068;447069;447070;447071	447069			7	
VIITNFPAAK	1	Unmodified	1072.6281	0.62808085	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.34	4		3				2	3		4	1	3	4	59.294	54.039	2	0.0001549	49196	160511_QHF_FH_JSI12i_1	95.909	74.381			1.116	1.1077	20.222	11	4	Median	1.1271	0.96033	13.83	3	2	Median	0.61989	0.73163	NaN	1	1	Median	1.2813	1.2858	20.159	3	0	Median	1.0918	1.1759	12.339	4	1	Median	409330000	194260000	215060000	75069000	33924000	41145000	3776800	2351500	1425300	199810000	104450000	95354000	130680000	53535000	77141000	54681	1609	51514	331539;331540;331541;331542;331543;331544;331545;331546;331547;331548;331549;331550	447072;447073;447074;447075;447076;447077;447078;447079;447080;447081;447082;447083;447084;447085	447076			14	
VIIWNTK	1	Unmodified	872.51199	0.51198846	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		2	2						1	1	2	1	1	44.47	43.523	2	0.0057784	36449	160511_QHF_FH_JSI10i_3	97.068	66.399			0.7326	0.73849	29.387	3	2	Plateau	0.50829	0.44196	NaN	1	1	Median	0.65211	0.73194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.7326	0.73849	NaN	1	0	Median	593480000	319270000	274210000	123260000	86663000	36599000	139940000	88897000	51044000	0	0	0	330280000	143710000	186570000	54682	5161	51515	331551;331552;331553;331554;331555	447086;447087;447088;447089;447090	447086			5	
VIIWREENGTWEK	1	Unmodified	1658.8417	0.84165545	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			56.164	54.608	3	0.0042782	45444	160511_QHF_FH_JSI10i_3	48.527	30.424			1.0741	1.0658	23.135	3	0	Plateau	1.0688	0.88781	31.921	2	0	Median	0.85266	0.96937	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	264190000	112320000	151880000	155020000	63434000	91581000	109180000	48883000	60295000	0	0	0	0	0	0	54683	1860	51516	331556;331557;331558	447091;447092;447093	447091			3	
VIIYQEK	1	Unmodified	891.50657	0.50656873	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	3	1	26.678	26.022	2	0.011756	21798	160511_QHF_FH_JSI11i_2	60.76	29.47			1.0679	1.1374	22.985	7	1	Median	1.0729	0.89942	33.202	2	0	Median	0.92407	1.1138	10.012	2	0	Median	1.2676	1.2517	27.491	2	1	Median	1.1326	1.1932	NaN	1	0	Median	1817300000	887730000	929600000	363770000	170410000	193360000	567120000	315570000	251550000	639400000	275650000	363750000	247030000	126100000	120930000	54684	5315	51517	331559;331560;331561;331562;331563;331564;331565;331566	447094;447095;447096;447097;447098;447099;447100;447101	447101			8	
VIKAVVPAK	2	Acetyl (K)	965.62735	0.62735256	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		48.308	37.793	2	0.037439	22329	160513_QHF_FH_JSI11Kac_4	55.531	12.284			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3553300	3553300	0	0	0	0	0	0	0	3553300	3553300	0	0	0	0	54685	1370	51518	331567	447102	447102	1307		1	
VIKDFMIQGGDFTR	1	Acetyl (K)	1667.8341	0.83412723	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		82.065	71.514	2	1.4519E-06	37840	160513_QHF_FH_JSI11Kac_5	105.17	89.415			0.32138	0.31752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32138	0.31752	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9205500	7560600	1644800	0	0	0	0	0	0	9205500	7560600	1644800	0	0	0	54686	1224	51519	331568	447103;447104	447103	1104		2	
VIKDFMIQGGDFTR	1	Acetyl (K);Oxidation (M)	1683.829	0.82904185	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		77.392	66.757	2	0.0028197	35473	160513_QHF_FH_JSI11Kac_5	75.695	68.807			0.042936	0.041036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.042936	0.041036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6948000	6037500	910500	0	0	0	0	0	0	6948000	6037500	910500	0	0	0	54687	1224	51519	331569	447105	447105	1104	855	1	
VIKDFMIQGGDFTRGDGTGGK	2	Acetyl (K)	2240.0896	0.089566649	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		76.595	67.27	3	0.052708	36705	160513_QHF_FH_JSI11Kac_6	47.75	30.381			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23555000	23555000	0	0	0	0	0	0	0	23555000	23555000	0	0	0	0	54688	1224	51520	331570	447106	447106	1104		1	
VILAGNLLSHSTQSR	0	Unmodified	1594.8791	0.87910359	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			60.638	51.911	3	0.0002052	27596	160513_QHF_FH_JSI9Kac_6	74.772	54.933			0.89453	0.89409	6.8928	2	1	Median	0.99561	0.85156	NaN	1	0	Median	0.80371	0.93875	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45137000	24771000	20366000	20781000	10896000	9884300	24356000	13874000	10482000	0	0	0	0	0	0	54689	1638	51521	331571;331572	447107;447108	447107			2	
VILALVLPFHPYVENVGGK	1	Unmodified	2064.1772	0.17718309	4652	Q9H1A3	METTL9	Methyltransferase-like protein 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		93.174	84.054	3	0.00029431	47253	160513_QHF_FH_JSI9Kac_6	94.384	78.442			0.78656	0.71545	90.189	2	2	Median	1.5554	1.3538	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.39775	0.37811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	213340000	135040000	78301000	82910000	34867000	48043000	0	0	0	130430000	100180000	30259000	0	0	0	54690	4652	51522	331573;331574	447109;447110	447110			2	
VILALVLPFHPYVENVGGKWEK	2	Unmodified	2507.3941	0.39405216	4652	Q9H1A3	METTL9	Methyltransferase-like protein 9	yes	yes	0	0	0	1	By MS/MS				16	0									1	1				90.783	82.068	4	0.014362	45841	160513_QHF_FH_JSI9Kac_6	34.067	29.267			0.98735	0.85696	NaN	1	0	Median	0.98735	0.85696	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64110000	28877000	35233000	64110000	28877000	35233000	0	0	0	0	0	0	0	0	0	54691	4652	51523	331575	447111	447111			1	
VILASNR	0	Unmodified	771.46029	0.46028724	1960	P61619;Q9H9S3	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		14.802	14.164	2	0.012621	11262	160511_QHF_FH_JSI10i_3	69.093	26.047			1.0354	0.99299	12.25	3	0	Plateau	1.5731	1.254	NaN	1	0	Median	0.91842	1.0722	NaN	1	0	Median	1.0354	0.98497	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	679950000	326900000	353040000	147990000	63559000	84431000	241180000	122730000	118450000	290770000	140610000	150160000	0	0	0	54692	1960	51524	331576;331577;331578	447112;447113	447112			2	
VILDEGHAIRNPNAQQTK	1	Unmodified	2003.0548	0.054836123	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		30.137	29.219	3;4	5.5071E-12	23753	160511_QHF_FH_JSI9i_3	145.62	135.15			0.8499	0.86149	20.793	6	0	Median	1.3064	1.037	6.334	2	0	Median	0.62848	0.72717	13.991	2	0	Median	0.8499	0.7854	23.057	2	0	Median	NaN	NaN	NaN	0	0	Median	540740000	250040000	290700000	220340000	90921000	129420000	213020000	109460000	103550000	107380000	49658000	57721000	0	0	0	54693	2540	51525	331579;331580;331581;331582;331583;331584	447114;447115;447116;447117;447118;447119;447120;447121	447120			8	
VILDLTPNYR	0	Unmodified	1202.6659	0.66592292	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.19	6.23	3	11	4					4	4	6	7	7	6	66.921	63.281	2;3	4.5501E-14	54554	160511_QHF_FH_JSI12i_2	160.11	126.02			0.83924	0.92923	66.561	25	9	Median	1.233	1.0427	22.817	5	1	Median	0.77487	0.9073	29.961	7	3	Median	0.89554	0.87283	116.21	7	3	Median	0.72831	0.76902	17.458	6	2	Median	14149000000	8052600000	6096600000	2011100000	880190000	1130900000	3382500000	1885700000	1496700000	6206500000	3900100000	2306300000	2549100000	1386500000	1162600000	54694	895	51526	331585;331586;331587;331588;331589;331590;331591;331592;331593;331594;331595;331596;331597;331598;331599;331600;331601;331602;331603;331604;331605;331606;331607;331608;331609;331610	447122;447123;447124;447125;447126;447127;447128;447129;447130;447131;447132;447133;447134;447135;447136;447137;447138;447139;447140;447141;447142;447143;447144;447145;447146;447147;447148;447149;447150;447151;447152;447153;447154;447155;447156;447157;447158;447159	447125			38	
VILDLTPNYRGENSWFSTQVDTVATK	1	Unmodified	2953.4822	0.48215148	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	3.28		6	9						1	4	5	4	3	94.599	93.918	3;4	7.6063E-94	44694	160513_QHF_FH_JSI10Kac_6	223.44	199.77			0.97946	0.98681	17.144	16	4	Median	1.2378	1.046	11.359	4	0	Median	0.88624	1.0306	11.57	5	0	Median	0.97946	0.95045	16.753	4	2	Median	0.87815	0.85556	32.97	3	2	Median	1773500000	847660000	925810000	497140000	207710000	289430000	614870000	339270000	275610000	490240000	225110000	265130000	171210000	75569000	95642000	54695	895	51527	331611;331612;331613;331614;331615;331616;331617;331618;331619;331620;331621;331622;331623;331624;331625;331626	447160;447161;447162;447163;447164;447165;447166;447167;447168;447169;447170;447171;447172;447173;447174;447175;447176;447177;447178;447179;447180;447181;447182;447183;447184;447185;447186;447187;447188;447189;447190;447191;447192;447193;447194;447195;447196;447197;447198;447199;447200	447200			41	
VILDYNTAHNK	1	Unmodified	1286.6619	0.66190017	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	3.52		7	6						1	2	3	5	4	27.42	26.112	2;3	1.6535E-08	21581	160511_QHF_FH_JSI12i_3	125.72	109.83			1.1957	1.1888	28.997	14	6	Median	1.4618	1.2149	34	2	1	Median	1.272	1.5569	45.166	3	2	Median	1.3964	1.4007	17.238	5	2	Median	1.0136	1.059	18.491	4	1	Median	1406400000	663870000	742560000	135140000	56138000	78998000	344030000	190280000	153760000	653160000	300840000	352320000	274100000	116610000	157490000	54696	2525	51528	331627;331628;331629;331630;331631;331632;331633;331634;331635;331636;331637;331638;331639;331640	447201;447202;447203;447204;447205;447206;447207;447208;447209;447210;447211;447212;447213;447214;447215;447216;447217;447218;447219;447220	447218			20	
VILEDVAMLHIKPDQFTYTSDHFETIMK	2	Unmodified	3320.6461	0.64612204	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	1	3	3	3	99.332	98.73	3;4;5	3.0377E-70	87188	160511_QHF_FH_JSI12i_3	220.55	203.92			0.97612	0.95997	22.745	10	2	Median	0.95327	0.80104	NaN	1	1	Median	0.78455	0.92393	16.32	3	0	Plateau	1.4052	1.2891	19.65	3	1	Plateau	1.053	1.0497	10.603	3	0	Plateau	2295300000	1077800000	1217500000	61704000	21960000	39744000	188810000	108430000	80380000	481830000	198110000	283720000	1562900000	749300000	813640000	54697	878	51529	331641;331642;331643;331644;331645;331646;331647;331648;331649;331650	447221;447222;447223;447224;447225;447226;447227;447228;447229;447230;447231;447232;447233;447234;447235;447236	447233			16	
VILEDVAMLHIKPDQFTYTSDHFETIMK	2	Oxidation (M)	3336.641	0.64103666	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	93.898	93.892	4	0.00037605	81292	160511_QHF_FH_JSI12i_3	41.047	30.625			1.0882	1.0956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0882	1.0956	NaN	1	0	Median	35909000	14956000	20953000	0	0	0	0	0	0	0	0	0	35909000	14956000	20953000	54698	878	51529	331651	447237	447237		438	1	
VILEPLIGDLPFVGAVSMFFIR	0	Unmodified	2432.3542	0.35416118	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4		2	2	1	104.31	98.251	2;3	4.1901E-59	58221	160513_QHF_FH_JSI10Kac_6	231.19	207			0.78639	1.0874	35.437	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.93532	1.0832	7.5801	2	0	Median	1.0745	1.0346	NaN	1	0	Median	1.8683	2.1525	NaN	1	1	Median	306430000	164840000	141590000	0	0	0	295810000	162040000	133770000	8268200	2201700	6066600	2353400	602540	1750900	54699	4399	51530	331652;331653;331654;331655;331656	447238;447239;447240;447241;447242;447243	447242			6	
VILEPLIGDLPFVGAVSMFFIR	0	Oxidation (M)	2448.3491	0.3490758	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	103.26	93.815	3	5.0766E-07	51595	160513_QHF_FH_JSI12Kac_6	72.585	60.805			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54700	4399	51530	331657	447244	447244		2466	1	
VILESEVIAEAVGVK	1	Unmodified	1554.8869	0.88687431	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	90.679	89.985	2	0.00010587	77742	160511_QHF_FH_JSI12i_2	102.4	66.441			1.2881	1.3533	30.143	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7192	1.6748	NaN	1	1	Median	0.96512	1.0936	NaN	1	0	Median	24514000	9304700	15210000	0	0	0	0	0	0	13924000	4053900	9870200	10590000	5250800	5339600	54701	264	51531	331658;331659	447245;447246;447247	447246			3	
VILESEVIAEAVGVKK	2	Unmodified	1682.9818	0.98183733	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		78.819	78.099	3	0.011357	69529	160511_QHF_FH_JSI10i_2	43.454	33.002			0.93196	1.1091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.93196	1.1091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15358000	7765400	7593000	0	0	0	15358000	7765400	7593000	0	0	0	0	0	0	54702	264	51532	331660;331661	447248;447249;447250	447250			3	
VILGQYNWLSYEDVFVR	0	Unmodified	2100.068	0.068026571	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	95.238	86.011	2	1.3531E-09	46720	160513_QHF_FH_JSI12Kac_6	208.82	187.59			0.84933	0.81779	4.201	2	2	Median	0.97611	0.84245	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73902	0.79386	NaN	1	1	Median	66196000	43561000	22634000	38358000	25820000	12538000	0	0	0	0	0	0	27837000	17741000	10096000	54703	707	51533	331662;331663	447251;447252	447252			2	
VILGSEAAQQHPEEVR	0	Unmodified	1761.901	0.90096124	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.28	2	8	4				1	3		3	4	6	5	35.049	32.372	2;3	3.3021E-30	28433	160511_QHF_FH_JSI10i_2	192.15	163.19			1.0466	1.0461	19.369	18	2	Median	1.116	0.95726	6.2691	3	0	Plateau	0.82675	1.0289	23.054	4	1	Median	1.0407	1.0461	16.388	6	1	Median	1.2173	1.3224	16.561	5	0	Median	2449400000	1194600000	1254800000	286730000	128360000	158380000	466580000	228740000	237840000	906500000	467040000	439450000	789610000	370480000	419130000	54704	5119	51534	331664;331665;331666;331667;331668;331669;331670;331671;331672;331673;331674;331675;331676;331677;331678;331679;331680;331681	447253;447254;447255;447256;447257;447258;447259;447260;447261;447262;447263;447264;447265;447266;447267;447268;447269;447270;447271;447272;447273;447274;447275;447276;447277;447278	447273			26	
VILHLKEDQTEYLEER	1	Acetyl (K)	2056.0477	0.047685059	898;880;2869	P08238;Q58FF7;P07900;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	72.818	63.86	2;3	1.2254E-88	34523	160513_QHF_FH_JSI11Kac_6	232.74	216.05			0.62227	0.6675	133.07	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4268	1.7104	NaN	1	0	Median	0.27139	0.2605	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	765430000	549050000	216380000	0	0	0	92273000	32657000	59616000	580570000	423800000	156770000	92590000	92590000	0	54705	898;880;2869	51535	331682;331683;331684;331685	447279;447280;447281;447282;447283;447284	447279	609;2703		6	
VILHLKEDQTEYLEERR	1	Acetyl (K)	2212.1488	0.14879609	898;880	P08238;Q58FF7;P07900	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	no	no	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	67.438	58.175	3;4	3.1789E-07	31564	160513_QHF_FH_JSI11Kac_6	110.22	100.96			1.7676	1.9022	264.47	2	1	Median	NaN	NaN	NaN	0	0	Median	10.437	12.343	NaN	1	1	Median	0.29936	0.29314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136590000	91533000	45055000	0	0	0	18962000	910540	18052000	109510000	82504000	27003000	8118600	8118600	0	54706	898;880	51536	331686;331687;331688;331689	447285;447286;447287;447288;447289	447285	609		5	
VILHSSSGNK	1	Unmodified	1040.5615	0.56145784	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	3	2	3	2	7.7273	5.8823	2;3	4.8787E-09	5028	160511_QHF_FH_JSI10i_3	111.06	98.48			0.81894	0.86342	18.066	10	0	Median	1.1362	0.91208	6.4128	3	0	Plateau	0.75595	0.8639	4.2544	2	0	Median	0.85132	0.81398	29.505	3	0	Median	0.70086	0.7233	8.5788	2	0	Median	1669900000	914160000	755770000	248480000	124360000	124110000	337140000	190220000	146920000	420220000	238050000	182170000	664090000	361520000	302570000	54707	28	51537	331690;331691;331692;331693;331694;331695;331696;331697;331698;331699	447290;447291;447292;447293;447294;447295;447296;447297;447298;447299;447300;447301;447302	447295			13	
VILKPDK	2	Unmodified	811.51674	0.51673948	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	14.459	14.508	2;3	0.02981	11174	160511_QHF_FH_JSI12i_3	40.268	8.9789			0.99968	0.93717	14.942	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99968	0.93717	NaN	1	0	Median	0.99369	1.0353	19.504	2	1	Median	1345000000	425090000	919940000	0	0	0	0	0	0	329530000	152380000	177150000	1015500000	272710000	742780000	54708	3101	51538	331700;331701;331702	447303;447304	447304			2	
VILLGDGGVGK	1	Unmodified	1026.6073	0.6073454	1729	P51151;Q9NP90	RAB9A;RAB9B	Ras-related protein Rab-9A;Ras-related protein Rab-9B	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.45	6.46	3	2					4	2			2	5	4	56.716	50.931	2	0.00017519	44014	160511_QHF_FH_JSI11i_2	82.287	38.479			0.86934	0.93276	36.761	10	1	Median	NaN	NaN	NaN	0	0	Median	0.84601	0.99989	NaN	1	0	Median	0.94805	0.95088	51.059	5	1	Median	0.79612	0.84175	15.981	4	0	Median	787600000	420690000	366910000	0	0	0	144130000	75616000	68509000	405540000	217000000	188540000	237930000	128070000	109870000	54709	1729	51539	331703;331704;331705;331706;331707;331708;331709;331710;331711;331712;331713	447305;447306;447307;447308;447309;447310;447311;447312;447313;447314;447315	447313			10	
VILMSATLNAEK	1	Unmodified	1288.7061	0.70607317	4681	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	59.605	58.271	2	0.0075516	50004	160511_QHF_FH_JSI12i_2	60.167	33.12			0.56362	0.61818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56362	0.61818	NaN	1	1	Median	21326000	13275000	8051200	0	0	0	0	0	0	0	0	0	21326000	13275000	8051200	54710	4681	51540	331714	447316	447316			1	
VILNPVNAGQPLHASNYELSDNAGCK	1	Unmodified	2780.3552	0.35517682	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		66.168	66.168	3	1.4645E-17	58922	160511_QHF_FH_JSI11i_3	105.16	94.897			0.9812	0.92247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9812	0.92247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59082000	35495000	23587000	0	0	0	0	0	0	59082000	35495000	23587000	0	0	0	54711	2547	51541	331715	447317;447318	447317			2	
VILPVSVDEYQVGQLYSVAEASK	1	Unmodified	2493.3003	0.30027093	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.5	0.5	2	2								1	1	1	1	101.22	101.12	3	5.3162E-26	91877	160511_QHF_FH_JSI10i_1	178.32	166.02			1.0349	1.0378	23.775	4	2	Median	1.1349	0.97386	NaN	1	0	Median	0.9437	1.1059	NaN	1	1	Median	1.4502	1.4452	NaN	1	0	Median	0.73966	0.82216	NaN	1	1	Median	668560000	328310000	340250000	178980000	75980000	103000000	146970000	98853000	48115000	132540000	51660000	80882000	210070000	101810000	108250000	54712	2145	51542	331716;331717;331718;331719	447319;447320;447321;447322	447320			4	
VILQDFTGVPAVVDFAAMR	0	Unmodified	2048.0765	0.076482767	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	101.88	101.74	2;3	1.6963E-15	89528	160511_QHF_FH_JSI11i_2	189.1	161.69			0.98383	0.98934	25.329	5	1	Median	NaN	NaN	NaN	0	0	Median	0.57351	0.71435	NaN	1	0	Median	1.0702	1.0814	12.584	2	1	Median	0.90638	1.0023	34.858	2	0	Median	803790000	420700000	383090000	0	0	0	88136000	57824000	30312000	327180000	161750000	165430000	388470000	201120000	187350000	54713	1194	51543	331720;331721;331722;331723;331724	447323;447324;447325	447324			3	
VILQPDVHPGNCWAFQGPQGFAVVR	0	Unmodified	2791.4017	0.40167351	5290	Q9UH99	SUN2	SUN domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			93.202	92.225	3	0.042441	76933	160511_QHF_FH_JSI10i_3	19.755	6.4344			0.85598	1.0371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85598	1.0371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5477300	3963100	1514200	0	0	0	5477300	3963100	1514200	0	0	0	0	0	0	54714	5290	51544	331725	447326	447326			1	
VILTSIDGVPGSDYINANYIDGYRK	1	Unmodified	2742.3865	0.38646018	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	91.133	90.759	3	4.6896E-08	78724	160511_QHF_FH_JSI12i_3	71.002	58.569			0.90782	1.0897	20.815	5	1	Median	NaN	NaN	NaN	0	0	Median	0.90406	1.1074	NaN	1	0	Median	0.89697	0.88402	29.584	2	0	Median	1.0527	1.083	17.973	2	1	Median	212310000	85129000	127180000	0	0	0	33195000	15202000	17993000	83371000	35149000	48221000	95740000	34778000	60962000	54715	971	51545	331726;331727;331728;331729;331730	447327;447328;447329;447330;447331	447331			5	
VILTSPLIRDELEK	1	Unmodified	1624.94	0.93997251	4243	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	71.249	70.664	3	0.0019296	62911	160511_QHF_FH_JSI11i_3	54.598	46.494			0.7843	0.76948	8.028	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64247	0.76034	NaN	1	0	Median	0.92645	0.87867	NaN	1	0	Median	0.7843	0.76948	NaN	1	0	Median	231000000	128500000	102500000	0	0	0	54511000	30283000	24229000	130970000	70392000	60581000	45514000	27822000	17691000	54716	4243	51546	331731;331732;331733	447332;447333;447334;447335	447332			4	
VILYTITLTNPLAPK	1	Unmodified	1655.9862	0.98619442	2815	Q3KR37	GRAMD1B	GRAM domain-containing protein 1B	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		91.028	81.668	3	0.00033777	45806	160513_QHF_FH_JSI11Kac_6	78.814	67.96			1.136	1.1033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.136	1.1033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23203000	10324000	12879000	0	0	0	0	0	0	23203000	10324000	12879000	0	0	0	54717	2815	51547	331734	447336	447336			1	
VIMDYESLEK	1	Unmodified	1225.59	0.59004036	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			1	3	2	3	56.281	54.387	2	1.5651E-05	46579	160511_QHF_FH_JSI12i_2	100.02	62.289			1.0581	1.0317	20.645	9	2	Median	1.2256	1.0041	NaN	1	0	Median	0.86374	1.0213	26.564	3	2	Median	1.1953	1.1884	20.001	2	0	Median	0.88435	0.94457	25.676	3	0	Plateau	3679100000	1720600000	1958500000	703040000	379580000	323460000	1008500000	495590000	512920000	987440000	419090000	568360000	980130000	426320000	553810000	54718	771	51548	331735;331736;331737;331738;331739;331740;331741;331742;331743	447337;447338;447339;447340;447341;447342;447343;447344;447345;447346;447347;447348;447349;447350;447351;447352;447353;447354;447355;447356	447341			20	
VIMDYESLEKANHEEVLAAGK	2	Acetyl (K)	2387.1679	0.16787655	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		77.619	67.652	3	1.2236E-10	35877	160513_QHF_FH_JSI11Kac_5	94.45	86.262			0.29191	0.28736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29191	0.28736	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33217000	31193000	2023500	0	0	0	0	0	0	33217000	31193000	2023500	0	0	0	54719	771	51549	331744;331745	447357;447358	447358	379		2	
VIMDYESLEKANHEEVLAAGK	2	Acetyl (K);Oxidation (M)	2403.1628	0.16279117	771	P00491	PNP	Purine nucleoside phosphorylase	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		72.08	61.28	3	0.010491	32790	160513_QHF_FH_JSI11Kac_5	42.172	19.951			0.36957	0.36187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36957	0.36187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6082300	4233800	1848500	0	0	0	0	0	0	6082300	4233800	1848500	0	0	0	54720	771	51549	331746	447359	447359	379	276	1	
VIMELFDNDQVGKDEFLGR	1	Unmodified	2224.0834	0.083418638	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	88.633	88.362	3	1.3033E-24	76672	160511_QHF_FH_JSI12i_3	150.45	137.78			1.2123	1.0969	39.887	4	2	Median	1.3156	1.1552	NaN	1	1	Median	1.7696	2.1976	NaN	1	1	Median	1.1172	1.0415	NaN	1	0	Median	0.89964	0.88415	NaN	1	0	Median	251480000	113680000	137800000	12605000	5860400	6744300	24186000	8722100	15464000	85586000	34932000	50653000	129100000	64162000	64938000	54721	5161	51550	331747;331748;331749;331750	447360;447361;447362;447363;447364;447365;447366;447367	447366			8	
VIMGEEVEPVGLMTGSGVVGVK	1	Unmodified	2186.1327	0.13267702	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	92.892	92.432	2;3	2.4027E-12	81206	160511_QHF_FH_JSI11i_2	107.14	94.974			1.0604	0.96698	10.295	4	1	Linear	0.98759	0.87061	NaN	1	0	Median	0.7402	0.92277	NaN	1	1	Median	1.0368	1.0133	NaN	1	0	Median	0.98269	1.0996	NaN	1	0	Median	154500000	74160000	80344000	46044000	18629000	27414000	30111000	18257000	11854000	49197000	22392000	26805000	29152000	14881000	14271000	54722	1296	51551	331751;331752;331753;331754;331755;331756	447368;447369;447370;447371;447372;447373	447372			6	
VIMITGDNK	1	Unmodified	989.52157	0.52156686	1103	P16615;O14983	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.54	2	3	2				3				5	2	3	35.297	31.146	2	6.0004E-06	27332	160511_QHF_FH_JSI10i_2	113.71	31.321			1.0376	1.1298	20.08	8	2	Median	NaN	NaN	NaN	0	0	Median	0.87377	1.0357	10.518	3	0	Median	1.2301	1.2207	11.777	2	1	Median	1.3121	1.4064	31.79	3	1	Median	1711800000	849950000	861810000	0	0	0	687810000	358270000	329550000	355320000	170560000	184760000	668630000	321130000	347510000	54723	1103	51552	331757;331758;331759;331760;331761;331762;331763;331764;331765;331766	447374;447375;447376;447377;447378;447379;447380;447381;447382;447383;447384	447384			11	
VIMVGSGGVGK	1	Unmodified	1002.5532	0.55320134	993;994	P11233;P11234	RALA;RALB	Ras-related protein Ral-A;Ras-related protein Ral-B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	2	3	4	34.465	33.828	2	3.9546E-07	29636	160511_QHF_FH_JSI10i_2	117.89	84.627			1.0264	1.0554	58.963	10	1	Median	1.2243	1.0427	NaN	1	0	Median	0.89851	1.0652	9.427	2	0	Median	1.2634	1.2285	19.903	3	0	Median	1.0264	1.0554	95.884	4	1	Median	1830200000	834270000	995940000	208920000	73505000	135420000	426830000	205780000	221050000	610570000	280820000	329750000	583880000	274160000	309720000	54724	993;994	51553	331767;331768;331769;331770;331771;331772;331773;331774;331775;331776	447385;447386;447387;447388;447389;447390;447391;447392;447393;447394;447395;447396;447397;447398;447399;447400;447401	447398			14	
VIMVGSGGVGK	1	Oxidation (M)	1018.5481	0.54811597	993;994	P11233;P11234	RALA;RALB	Ras-related protein Ral-A;Ras-related protein Ral-B	no	no	0	0	1	0			By MS/MS	By MS/MS	15	0								2				1	1	34.803	25.182	2	0.015298	14865	160513_QHF_FH_JSI11Kac_5	47.198	23.769			0.96104	0.98767	25.335	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1945	1.1814	NaN	1	0	Median	0.77323	0.82568	NaN	1	0	Median	6332300	3252200	3080100	0	0	0	0	0	0	4398400	2208100	2190200	1933900	1044100	889830	54725	993;994	51553	331777;331778	447402	447402		574	1	
VIMVTGDHPITAK	1	Unmodified	1380.7435	0.74352131	821;1032;1828;2467	P05023;P20648;P13637;P54707;Q13733	ATP1A1;ATP4A;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.13		9	10						4	6	6	6	5	40.451	38.273	2;3	4.0277E-10	33741	160511_QHF_FH_JSI10i_2	143.24	123.92			1.1815	1.0819	29.146	18	4	Median	1.2949	1.0907	11.828	4	1	Median	1.0784	1.3054	31.816	4	1	Median	1.0146	1.0266	15.579	5	0	Median	1.1876	1.185	45.672	5	2	Median	6949800000	3385000000	3564800000	778800000	314580000	464210000	1160300000	595980000	564290000	2513200000	1286600000	1226600000	2497500000	1187800000	1309700000	54726	821;1032;1828;2467	51554	331779;331780;331781;331782;331783;331784;331785;331786;331787;331788;331789;331790;331791;331792;331793;331794;331795;331796;331797;331798;331799;331800;331801	447403;447404;447405;447406;447407;447408;447409;447410;447411;447412;447413;447414;447415;447416;447417;447418;447419;447420;447421;447422;447423;447424;447425;447426;447427;447428;447429;447430;447431	447426			29	
VIMVTGDHPITAK	1	Oxidation (M)	1396.7384	0.73843593	821;1032;1828;2467	P05023;P20648;P13637;P54707;Q13733	ATP1A1;ATP4A;ATP1A3;ATP12A;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Potassium-transporting ATPase alpha chain 1;Sodium/potassium-transporting ATPase subunit alpha-3;Potassium-transporting ATPase alpha chain 2;Sodium/potassium-transporting ATPase subunit alpha-4	no	no	0	0	1	0	By MS/MS			By MS/MS	15	0								2		1			1	41.306	31.378	3	0.0069129	17251	160513_QHF_FH_JSI9Kac_5	40.552	29.647			0.94802	0.91493	1.1056	2	0	Median	1.103	0.92211	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8148	0.9078	NaN	1	0	Median	9383100	5037900	4345100	4317300	2079800	2237500	0	0	0	0	0	0	5065800	2958100	2107700	54727	821;1032;1828;2467	51554	331802;331803	447432;447433;447434	447432		349	3	
VINAAHSFYNGTTTLPISDEDR	0	Unmodified	2420.1608	0.16081734	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	64.842	64.467	3	3.9512E-07	57273	160511_QHF_FH_JSI11i_3	79.635	71.034			0.83976	1.043	10.603	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.71579	0.87737	NaN	1	0	Median	1.0791	1.0498	NaN	1	0	Median	0.83976	0.87018	NaN	1	1	Median	135480000	74392000	61089000	0	0	0	33308000	17347000	15961000	63104000	30383000	32721000	39069000	26662000	12406000	54728	1693	51555	331804;331805;331806	447435;447436;447437;447438	447435			4	
VINAAHSFYNGTTTLPISDEDRTPR	0	Unmodified	2774.3624	0.36237069	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.43	6.07		2	3						2	3	2	2		63.263	59.965	4	1.6691E-29	49384	160511_QHF_FH_JSI9i_3	167.72	134.37			0.77494	0.90433	20.162	7	1	Median	1.2356	1.0534	8.2172	3	0	Median	0.65954	0.79136	18.872	2	0	Median	0.74784	0.71787	2.821	2	1	Median	NaN	NaN	NaN	0	0	Median	794600000	395610000	398990000	379960000	168870000	211090000	321510000	172720000	148800000	93132000	54031000	39101000	0	0	0	54729	1693	51556	331807;331808;331809;331810;331811;331812;331813	447439;447440;447441;447442;447443;447444;447445;447446;447447;447448;447449;447450;447451	447446			13	
VINDGLFYYEQDLWAEK	1	Unmodified	2101.9997	0.99967223	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	2	1	4	99.706	99.565	2	4.0637E-11	90038	160511_QHF_FH_JSI10i_1	110.29	88.247			0.7665	0.83889	35.6	5	5	Median	1.1815	0.99756	NaN	1	1	Median	0.63537	0.68934	NaN	1	1	Median	0.7665	0.73266	NaN	1	1	Median	1.0514	1.1847	48.817	2	2	Median	58615000	27522000	31093000	7627100	2911900	4715300	11116000	7108700	4007200	15071000	8024200	7046600	24801000	9476800	15324000	54730	3132	51557	331814;331815;331816;331817;331818;331819;331820;331821	447452;447453;447454;447455;447456;447457;447458;447459;447460;447461	447459			10	
VINDKHDDVMAK	2	Unmodified	1383.6816	0.68164933	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	12.498	12.58	2;3	1.1079E-05	10053	160511_QHF_FH_JSI11i_3	101.93	75.99			0.4918	0.50429	29.525	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4918	0.50429	29.525	2	2	Median	204950000	136730000	68222000	0	0	0	0	0	0	0	0	0	204950000	136730000	68222000	54731	4272	51558	331822;331823;331824;331825	447462;447463;447464;447465	447463			4	
VINDKHDDVMAK	2	Acetyl (K)	1425.6922	0.69221402	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	32.908	23.739	3	0.00018131	14106	160513_QHF_FH_JSI10Kac_4	83.047	71.132			1.0185	1.2196	202.77	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0185	1.2196	NaN	1	0	Median	0.030975	0.030484	NaN	1	1	Median	0.74518	0.82928	NaN	1	0	Median	34736000	19921000	14816000	0	0	0	16507000	7524000	8982900	6369100	6239400	129690	11860000	6157100	5703100	54732	4272	51558	331826;331827;331828	447466;447467;447468;447469	447467	3096		4	
VINDPIHGHIELHPLLVR	0	Unmodified	2071.1691	0.16907802	5606	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		69.472	69.472	5	0.053677	61952	160511_QHF_FH_JSI11i_3	14.041	4.1187			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4285700	0	4285700	0	0	0	0	0	0	4285700	0	4285700	0	0	0	54733	5606	51559	331829	447470	447470			1	
VINEEYK	1	Unmodified	893.44945	0.44944778	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	14.563	14.039	2	0.0084038	11563	160511_QHF_FH_JSI10i_1	83.614	51.144			1.0901	1.0708	27.988	8	1	Median	1.3602	1.1599	21.64	2	0	Median	0.97078	1.1922	29.696	2	0	Median	1.1144	1.1022	26.046	2	0	Median	0.77748	0.84349	44.084	2	1	Median	11336000000	5419300000	5916200000	2432100000	849040000	1583000000	3075600000	1447400000	1628100000	2885800000	1483400000	1402400000	2942100000	1639500000	1302600000	54734	2283;2741	51560	331830;331831;331832;331833;331834;331835;331836;331837	447471;447472;447473;447474;447475;447476;447477;447478;447479	447473			9	
VINEEYKIWKK	3	Acetyl (K)	1490.8133	0.81331543	2741;2283	Q09028;Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	no	no	1	0	0	2		By matching	By MS/MS		16	0									2		1	1		61.368	52.315	3	0.042911	28398	160513_QHF_FH_JSI11Kac_6	41.684	28.483			0.49472	0.52023	51.563	2	0	Median	NaN	NaN	NaN	0	0	Median	0.63717	0.74911	NaN	1	0	Median	0.38411	0.36129	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16199000	10955000	5244600	0	0	0	5888600	3361700	2526900	10311000	7593000	2717700	0	0	0	54735	2283;2741	51561	331838;331839	447480	447480			1	
VINEPTAAALAYGLDK	1	Unmodified	1644.8723	0.87228688	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.35	4.93	11	8	11				4	3		7	10	10	10	75.378	73.053	2;3	3.5129E-65	67140	160511_QHF_FH_JSI11i_1	226.17	200.79			1.0104	0.9814	44.515	35	9	Median	1.12	0.92167	5.141	6	1	Median	0.79341	0.95451	62.823	10	3	Median	1.0537	1.033	45.184	10	3	Median	1.0104	1.0778	18.47	9	2	Median	19905000000	9782600000	10123000000	4322900000	1896900000	2426000000	4978800000	2680200000	2298700000	5698500000	2787600000	2910900000	4904900000	2417900000	2487000000	54736	1480	51562	331840;331841;331842;331843;331844;331845;331846;331847;331848;331849;331850;331851;331852;331853;331854;331855;331856;331857;331858;331859;331860;331861;331862;331863;331864;331865;331866;331867;331868;331869;331870;331871;331872;331873;331874;331875;331876	447481;447482;447483;447484;447485;447486;447487;447488;447489;447490;447491;447492;447493;447494;447495;447496;447497;447498;447499;447500;447501;447502;447503;447504;447505;447506;447507;447508;447509;447510;447511;447512;447513;447514;447515;447516;447517;447518;447519;447520;447521;447522;447523;447524;447525;447526;447527;447528;447529;447530;447531;447532;447533;447534;447535;447536;447537;447538;447539;447540;447541;447542;447543;447544;447545;447546;447547;447548;447549;447550;447551;447552;447553;447554;447555;447556;447557;447558;447559;447560;447561;447562;447563;447564;447565	447488			84	
VINHKLYK	2	Acetyl (K)	1055.6128	0.61276513	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	1	2	2	1	27.088	18.652	2;3	0.0062956	10978	160513_QHF_FH_JSI11Kac_6	53.968	37.428			0.83518	0.8926	64.877	6	0	Median	1.5412	1.307	NaN	1	0	Median	1.2669	1.4872	6.9493	2	0	Median	0.40752	0.39243	3.9313	2	0	Median	0.563	0.60957	NaN	1	0	Median	82153000	49517000	32636000	7275600	3241400	4034200	25222000	11889000	13333000	37949000	26746000	11202000	11707000	7640600	4066400	54737	1205	51563	331877;331878;331879;331880;331881;331882	447566;447567;447568;447569	447566	1074		3	
VINIDFRDPEESK	1	Unmodified	1560.7784	0.77838649	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	55.074	54.953	2;3	2.193E-06	48706	160511_QHF_FH_JSI11i_3	98.353	64.468			0.69655	0.69094	18.825	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87434	0.83268	24.731	2	1	Median	0.65888	0.67385	1.8856	2	2	Median	656030000	352960000	303070000	0	0	0	0	0	0	352800000	169440000	183360000	303230000	183520000	119710000	54738	1615	51564	331883;331884;331885;331886;331887	447570;447571;447572;447573;447574;447575	447573			6	
VINIINAAQENSPVTVAEALDR	0	Unmodified	2336.2336	0.23358835	668	O95263	PDE8B	High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	1	2		99.512	99.449	3	2.4718E-06	88066	160511_QHF_FH_JSI10i_2	69.03	64.774			1.124	0.99749	17.925	3	1	Median	1.124	0.99749	NaN	1	1	Median	0.77759	0.97501	NaN	1	0	Median	1.418	1.3444	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60655000	26530000	34125000	15720000	6341100	9379300	14038000	8015200	6022400	30897000	12174000	18724000	0	0	0	54739	668	51565	331888;331889;331890;331891	447576;447577;447578;447579	447579			4	
VINLNDNTFTEK	1	Unmodified	1406.7042	0.70415892	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	3.25	6	6	1				1			3	4	3	4	54.443	52.505	2	2.7151E-11	46718	160511_QHF_FH_JSI9i_1	152.62	140.77			1.1596	1.017	26.769	9	4	Median	1.1295	0.91628	7.7393	3	1	Median	1.0471	1.2589	31.662	2	1	Median	1.3717	1.3682	20.366	2	1	Median	0.8729	0.92425	38.597	2	1	Median	2618800000	1452800000	1166000000	557850000	296550000	261300000	670110000	409730000	260370000	870910000	468670000	402250000	519920000	277880000	242040000	54740	1578	51566	331892;331893;331894;331895;331896;331897;331898;331899;331900;331901;331902;331903;331904;331905	447580;447581;447582;447583;447584;447585;447586;447587;447588;447589;447590;447591;447592;447593;447594;447595;447596	447589			17	
VINLSQYGPAYFGQEHAR	0	Unmodified	2049.0068	0.0068232975	3721	Q8TDJ6	DMXL2	DmX-like protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			70.119	68.655	3	2.5338E-05	57534	160511_QHF_FH_JSI10i_3	75.239	69.123			1.3334	1.491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3334	1.491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30838000	18792000	12045000	0	0	0	30838000	18792000	12045000	0	0	0	0	0	0	54741	3721	51567	331906	447597	447597			1	
VINQILTEMDGMSTK	1	Unmodified	1678.827	0.82699294	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.674	10	7	2							7	4	4	4	75.813	75.114	2;3	1.9621E-21	68079	160511_QHF_FH_JSI10i_1	211.26	184.59			0.90854	0.95163	66.45	16	9	Median	1.1306	0.97341	87.832	5	4	Median	0.97329	1.149	77.198	4	2	Median	0.99987	0.96658	58.91	4	2	Median	0.84278	0.88773	27.544	3	1	Plateau	5034400000	2314800000	2719500000	877100000	323460000	553640000	1331000000	734200000	596760000	2031300000	843970000	1187300000	795020000	413210000	381810000	54742	1846	51568	331907;331908;331909;331910;331911;331912;331913;331914;331915;331916;331917;331918;331919;331920;331921;331922;331923;331924;331925	447598;447599;447600;447601;447602;447603;447604;447605;447606;447607;447608;447609;447610;447611;447612;447613;447614;447615;447616;447617;447618;447619;447620;447621;447622;447623	447609			26	
VINQILTEMDGMSTK	1	Oxidation (M)	1694.8219	0.82190756	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.83	5.79	1	3					2				1	1	4	69.299	63.565	2;3	0.0012678	54553	160511_QHF_FH_JSI12i_2	69.01	52.757			1.5425	1.7616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5425	1.7616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30697000	20493000	10203000	0	0	0	2456200	800160	1656000	18772000	18772000	0	9468800	921650	8547100	54743	1846	51568	331926;331927;331928;331929;331930;331931	447624;447625;447626;447627;447628;447629	447626		1528;1529	6	
VINQILTEMDGMSTKK	2	Oxidation (M)	1822.9169	0.91687058	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			4									1	3	46.582	46.405	3	0.00028796	37378	160511_QHF_FH_JSI12i_3	72.315	60.03			0.90885	0.87572	50.07	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75208	0.70282	NaN	1	1	Median	1.0983	1.0912	55.561	3	2	Median	289670000	145700000	143970000	0	0	0	0	0	0	19827000	13901000	5925300	269840000	131800000	138050000	54744	1846	51569	331932;331933;331934;331935	447630;447631;447632;447633;447634	447634		1528;1529	5	
VINQILTEMDGMSTKK	2	Unmodified	1806.922	0.92195596	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	3	4	66.731	66.041	2;3	2.0295E-26	57038	160511_QHF_FH_JSI12i_3	229.97	204.58			0.63316	0.675	99.702	12	12	Median	1.3266	1.1242	122.76	2	2	Median	1.3244	1.5408	136.8	3	3	Median	0.44263	0.41573	106.2	3	3	Median	0.63316	0.675	100.62	4	4	Median	7325200000	3222200000	4103100000	774820000	255530000	519280000	1024800000	563050000	461790000	1726500000	883570000	842930000	3799100000	1520000000	2279100000	54745	1846	51569	331936;331937;331938;331939;331940;331941;331942;331943;331944;331945;331946;331947	447635;447636;447637;447638;447639;447640;447641;447642;447643;447644;447645;447646;447647	447646			13	
VINQYQVVKPTAER	1	Unmodified	1643.8995	0.89950468	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		33.587	32.626	2;3	0.0064037	28383	160511_QHF_FH_JSI11i_3	43.184	25.555			0.94515	0.94462	51.761	4	1	Median	1.1401	0.97033	NaN	1	0	Median	0.97346	1.1372	30.032	2	1	Median	0.44225	0.41139	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	396120000	209790000	186320000	83338000	41620000	41718000	214500000	117450000	97053000	98277000	50726000	47551000	0	0	0	54746	2567	51570	331948;331949;331950;331951	447648;447649;447650;447651	447648			3	
VINSVDIK	1	Unmodified	886.51238	0.51238239	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.98	4	2					3			2	3	2	2	31.907	28.232	2	0.0033989	24976	160511_QHF_FH_JSI11i_1	78.516	26.729			1.0727	1.1112	36.167	9	3	Median	1.9125	1.6163	52.64	2	1	Median	1.0682	1.2975	22.905	3	1	Plateau	1.4411	1.412	39.353	2	1	Median	0.83007	0.88513	32.166	2	0	Median	1401500000	732600000	668950000	334470000	158300000	176160000	413990000	246110000	167880000	326400000	137160000	189240000	326680000	191020000	135660000	54747	472	51571	331952;331953;331954;331955;331956;331957;331958;331959;331960	447652;447653;447654;447655;447656;447657;447658	447652			7	
VINTGIK	1	Unmodified	743.45414	0.45413923	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.4	0.8	1	1	3							1	2	2		17.423	16.875	2	0.01534	13645	160511_QHF_FH_JSI11i_2	64.803	7.3398			0.98944	0.89616	30.598	5	1	Median	1.023	0.85262	NaN	1	0	Median	0.60997	0.70389	34.153	2	1	Median	1.1218	1.0963	24.657	2	0	Median	NaN	NaN	NaN	0	0	Median	914170000	494940000	419230000	103970000	51984000	51981000	255550000	165890000	89663000	554650000	277060000	277590000	0	0	0	54748	2282	51572	331961;331962;331963;331964;331965	447659;447660;447661	447661			3	
VINTGIKVWCR	1	Acetyl (K)	1386.7442	0.74419001	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.276	62.458	2	8.2032E-20	33825	160513_QHF_FH_JSI11Kac_6	168.79	117.92			1.0689	1.0753	29.285	4	0	Median	1.1631	0.99209	NaN	1	0	Median	0.98238	1.1655	NaN	1	0	Median	0.6734	0.64878	NaN	1	0	Median	1.1884	1.2442	NaN	1	0	Median	177870000	96305000	81567000	17981000	9351400	8629700	44218000	23453000	20765000	66730000	41040000	25689000	48943000	22460000	26484000	54749	2282	51573	331966;331967;331968;331969	447662;447663;447664;447665;447666;447667	447662	2380		6	
VINVGQR	0	Unmodified	784.45554	0.45553621	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	13.706	13.269	2	0.049116	10242	160511_QHF_FH_JSI12i_3	43.047	20.01			0.77565	0.82052	65.714	4	0	Linear	4.5315	3.654	NaN	1	0	Median	1.0697	1.2588	NaN	1	0	Median	1.0496	0.95932	NaN	1	0	Median	0.86644	0.87494	NaN	1	0	Median	213160000	97105000	116060000	18082000	6255200	11827000	44657000	22485000	22172000	70477000	30086000	40390000	79947000	38279000	41668000	54750	449	51574	331970;331971;331972;331973	447668	447668			1	
VIPAADLSQQISTAGTEASGTGNMK	1	Unmodified	2446.201	0.20096759	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	70.87	70.338	3	3.1813E-13	63992	160511_QHF_FH_JSI11i_1	102.29	97.159			1.0708	0.99887	17.249	4	3	Median	1.316	1.0833	NaN	1	1	Median	0.70948	0.84076	NaN	1	1	Median	1.2683	1.2403	NaN	1	0	Median	0.90408	0.92102	NaN	1	1	Median	270380000	121790000	148580000	56527000	21145000	35382000	74116000	37795000	36321000	56577000	23923000	32653000	83160000	38931000	44229000	54751	992	51575	331974;331975;331976;331977	447669;447670;447671;447672	447669			4	
VIPATDLSEQISTAGTEASGTGNMK	1	Unmodified	2477.1955	0.19554786	855	P06737	PYGL	Glycogen phosphorylase, liver form	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		71.328	70.98	3	0.025484	64625	160511_QHF_FH_JSI11i_1	26.127	18.324			1.2884	1.2651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2884	1.2651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44256000	15361000	28895000	0	0	0	0	0	0	44256000	15361000	28895000	0	0	0	54752	855	51576	331978	447673	447673			1	
VIPEDGPAAQNPENVK	1	Unmodified	1676.837	0.836964	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	8					2				2	2	3	3	39.488	37.174	2;3	4.3852E-08	32659	160511_QHF_FH_JSI9i_1	113.1	108.63			1.0809	1.0899	23.172	10	0	Median	1.0852	0.88225	5.397	2	0	Median	1.0431	1.2173	7.4979	2	0	Median	1.0993	1.0732	35.547	3	0	Median	1.0505	1.1069	11.989	3	0	Median	2028800000	1012100000	1016700000	446810000	189500000	257310000	459180000	258540000	200640000	603410000	303570000	299830000	519440000	260490000	258950000	54753	2185	51577	331979;331980;331981;331982;331983;331984;331985;331986;331987;331988	447674;447675;447676;447677;447678;447679;447680;447681;447682;447683;447684;447685;447686;447687;447688;447689;447690	447688			17	
VIPELNGK	1	Unmodified	868.50182	0.5018177	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.36	4	4	5			2	3	4	3	6	5	7	7	40.501	34.835	2	2.5409E-06	30846	160511_QHF_FH_JSI12i_3	143.02	78.243			1.0286	1.03	16.639	24	1	Median	1.1636	1.0395	16.854	6	1	Median	0.94317	1.0049	10.803	5	0	Median	0.94139	0.93617	19.766	6	0	Median	1.0171	1.0537	15.437	7	0	Median	73975000000	35721000000	38254000000	14366000000	6920700000	7444900000	18555000000	9297600000	9257400000	23224000000	10765000000	12459000000	17831000000	8738500000	9092500000	54754	812	51578	331989;331990;331991;331992;331993;331994;331995;331996;331997;331998;331999;332000;332001;332002;332003;332004;332005;332006;332007;332008;332009;332010;332011;332012;332013	447691;447692;447693;447694;447695;447696;447697;447698;447699;447700;447701;447702;447703;447704;447705;447706;447707;447708;447709;447710;447711;447712;447713;447714;447715;447716;447717;447718;447719;447720;447721;447722;447723;447724;447725;447726;447727;447728;447729;447730;447731;447732;447733;447734;447735;447736;447737;447738;447739;447740;447741;447742;447743;447744;447745;447746;447747;447748;447749;447750;447751;447752;447753;447754;447755;447756;447757;447758;447759;447760;447761;447762;447763;447764;447765;447766;447767;447768;447769;447770;447771;447772;447773	447771			83	
VIPELNGKLTGMAFR	1	Acetyl (K)	1686.9127	0.9127119	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	87.027	77.664	2;3	3.5218E-11	43196	160513_QHF_FH_JSI11Kac_6	131.69	96.971			0.34204	0.32564	8.4852	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34204	0.32564	8.4852	2	0	Median	NaN	NaN	NaN	0	0	Median	257280000	202620000	54667000	0	0	0	0	0	0	220930000	166260000	54667000	36352000	36352000	0	54755	812	51579	332014;332015;332016	447774;447775;447776	447775	447		3	
VIPGAAEK	1	Unmodified	783.44905	0.44905385	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		23.698	16.001	2	0.031309	10528	160513_QHF_FH_JSI11Kac_4	48.756	2.0922			0.9852	0.9655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9852	0.9655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13600000	4959800	8640400	0	0	0	0	0	0	13600000	4959800	8640400	0	0	0	54756	2603	51580	332017	447777	447777			1	
VIPHFTATADAFK	1	Unmodified	1416.7402	0.74015049	2542	Q14554	PDIA5	Protein disulfide-isomerase A5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	61.079	60.481	3	1.4778E-05	50859	160511_QHF_FH_JSI10i_3	88.552	75.746			1.8554	1.8473	51.869	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78253	0.86762	NaN	1	0	Median	2.4941	2.3427	NaN	1	1	Median	1.8554	1.8473	NaN	1	0	Median	305780000	107280000	198500000	0	0	0	29261000	14639000	14622000	120850000	32148000	88700000	155680000	60498000	95178000	54757	2542	51581	332018;332019;332020	447778;447779	447779			2	
VIPLDRDNK	1	Unmodified	1068.5928	0.59275797	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							4	4	2	2	20.804	20.106	2;3	0.00067305	16345	160511_QHF_FH_JSI12i_3	57.55	45.818			0.89154	0.98599	57.785	12	7	Median	3.3196	2.7749	74.604	4	4	Linear	0.89154	1.0472	61.688	4	2	Median	0.71618	0.69542	65.306	2	1	Median	0.87738	0.8904	10.08	2	0	Median	2337200000	1159600000	1177600000	493040000	218810000	274230000	761880000	388980000	372900000	717690000	370270000	347420000	364550000	181500000	183060000	54758	2734	51582	332021;332022;332023;332024;332025;332026;332027;332028;332029;332030;332031;332032	447780;447781;447782;447783;447784;447785;447786;447787;447788;447789;447790;447791;447792;447793;447794;447795;447796;447797;447798;447799	447798			20	
VIPLVTGFIEALFMTVDK	1	Unmodified	1992.1006	0.10057225	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	16	0									4	1	1		2	105.52	97.064	2;3	4.1114E-08	52753	160513_QHF_FH_JSI12Kac_6	110.12	90.407			0.88337	0.76365	134.56	3	1	Median	0.88337	0.76365	NaN	1	0	Median	0.086546	0.10343	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2295	1.3376	NaN	1	0	Median	166250000	117420000	48836000	68374000	35629000	32744000	73934000	66910000	7024000	0	0	0	23946000	14878000	9068100	54759	557	51583	332033;332034;332035;332036	447800;447801;447802	447800			3	
VIPNLPSEGQPALVEVHSMEALLQHTSEQEEMR	0	Unmodified	3697.808	0.80799542	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				101.15	101.07	4	1.0455E-20	88869	160511_QHF_FH_JSI9i_2	89.129	82.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	129530000	60036000	69492000	129530000	60036000	69492000	0	0	0	0	0	0	0	0	0	54760	235	51584	332037	447803	447803			1	
VIPPAGQTEDAEPISEPEK	1	Unmodified	2005.9844	0.9844161	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	15									3	3	6	3	48.581	47.921	2;3	2.0353E-07	42648	160511_QHF_FH_JSI9i_1	106.17	83.257			1.0499	1.0114	14.854	13	7	Median	1.2526	1.0272	9.1433	3	2	Plateau	0.80063	0.94277	7.9984	2	1	Median	1.0409	1.0114	16.641	5	2	Median	1.2252	1.2286	7.4478	3	2	Median	1144200000	586310000	557860000	216610000	104830000	111780000	251850000	143780000	108070000	486720000	249720000	237000000	189000000	87986000	101010000	54761	5633	51585	332038;332039;332040;332041;332042;332043;332044;332045;332046;332047;332048;332049;332050;332051;332052	447804;447805;447806;447807;447808;447809;447810;447811;447812;447813;447814;447815;447816;447817;447818;447819;447820;447821;447822;447823;447824;447825;447826;447827;447828;447829;447830;447831;447832;447833;447834;447835;447836	447833			33	
VIPSFMCQAGDFTNHNGTGGK	1	Unmodified	2236.9994	0.99937143	1348	P30405	PPIF	Peptidyl-prolyl cis-trans isomerase F, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							2	2	1	2	68.079	67.327	3	2.1505E-46	59819	160511_QHF_FH_JSI11i_3	203.81	200.47			1.0353	1.076	24.996	7	1	Median	1.1801	0.98248	48.014	2	0	Median	0.84486	1.0078	26.188	2	0	Median	0.82013	0.77817	NaN	1	0	Median	1.0663	1.0858	1.2756	2	1	Median	1535300000	809080000	726180000	161410000	70091000	91323000	358110000	193510000	164600000	662530000	372770000	289760000	353200000	172710000	180490000	54762	1348	51586	332053;332054;332055;332056;332057;332058;332059	447837;447838;447839;447840;447841;447842;447843;447844;447845;447846;447847;447848;447849	447838			13	
VIPSLFR	0	Unmodified	830.50142	0.50142377	5016	Q9NUU6	FAM105A	Inactive ubiquitin thioesterase FAM105A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	63.403	62.581	2	0.012406	55511	160511_QHF_FH_JSI11i_3	69.432	17.201			0.94901	0.87989	11.429	4	0	Median	1.1087	0.90354	NaN	1	0	Median	0.74783	0.85686	NaN	1	0	Median	1.1256	1.0526	NaN	1	0	Median	0.8123	0.80577	NaN	1	0	Median	181210000	93831000	87379000	62619000	30161000	32459000	46544000	25916000	20628000	45278000	21260000	24018000	26768000	16494000	10274000	54763	5016	51587	332060;332061;332062;332063	447850;447851	447850			2	
VIPSPFK	1	Unmodified	786.46398	0.46397563	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.75	2	4	4					1		3	3	3	2	49.043	47.33	2	0.0019752	41646	160511_QHF_FH_JSI9i_2	114.54	89.541			1.0001	1.0886	16.835	11	1	Median	1.389	1.0991	19.092	3	0	Median	0.94305	1.1079	12.088	3	1	Median	0.7902	0.92683	19.193	3	0	Plateau	0.91299	0.96565	17.454	2	0	Median	5736700000	2845500000	2891300000	951500000	428690000	522810000	1187600000	613930000	573640000	1690800000	868460000	822320000	1906900000	934390000	972480000	54764	1415	51588	332064;332065;332066;332067;332068;332069;332070;332071;332072;332073;332074	447852;447853;447854;447855;447856;447857;447858;447859;447860;447861;447862;447863;447864;447865;447866;447867;447868;447869;447870;447871;447872;447873;447874;447875;447876;447877;447878;447879;447880;447881;447882;447883;447884;447885	447874			34	
VIPSPFKHADIVTTTTHK	2	Acetyl (K)	2033.0946	0.094575672	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	70.373	61.153	3;4	3.2841E-17	33205	160513_QHF_FH_JSI11Kac_6	136.49	114.65			0.15026	0.16347	108.14	5	3	Median	NaN	NaN	NaN	0	0	Median	0.1417	0.16347	NaN	1	1	Median	0.34771	0.33387	116.56	2	1	Median	0.31847	0.3428	170.16	2	1	Median	382320000	230650000	151670000	0	0	0	14652000	14092000	559560	248730000	149280000	99454000	118940000	67283000	51657000	54765	1415	51589	332075;332076;332077;332078;332079	447886;447887;447888;447889;447890;447891	447886	1373;1377		6	
VIPSQEHLNGPLPVPFTNGEIQK	1	Unmodified	2513.3278	0.32782309	198	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.596	1	8	6							3	3	5	4	79.933	79.27	3;4	2.1751E-11	68647	160511_QHF_FH_JSI12i_2	106.12	98.499			1.0622	1.0469	30.228	15	3	Median	1.0565	0.89745	21.361	3	1	Median	0.73232	0.90795	19.66	3	1	Median	1.1326	0.76109	36.406	5	1	Linear	1.1983	1.2534	11.621	4	0	Median	2282300000	1131200000	1151100000	311680000	155850000	155830000	401400000	246590000	154810000	940410000	443340000	497070000	628760000	285400000	343360000	54766	198	51590	332080;332081;332082;332083;332084;332085;332086;332087;332088;332089;332090;332091;332092;332093;332094	447892;447893;447894;447895;447896;447897;447898;447899;447900;447901;447902;447903;447904;447905;447906;447907;447908;447909;447910;447911;447912;447913;447914	447898			23	
VIPSQESVQLASQFPGAITLTHSGGHFIPAAAPQR	0	Unmodified	3611.8849	0.88486425	3822	Q8WZ82	OVCA2	Ovarian cancer-associated gene 2 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			94.51	93.538	4;5	1.7777E-22	77761	160511_QHF_FH_JSI10i_3	98.883	94.525			0.975	0.96078	10.175	2	0	Median	1.056	0.89408	NaN	1	0	Median	0.90024	1.0324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71143000	38801000	32342000	10344000	4255700	6088700	60798000	34545000	26254000	0	0	0	0	0	0	54767	3822	51591	332095;332096	447915;447916;447917	447916			3	
VIPTLALLK	1	Unmodified	966.64775	0.64775366	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							2	2	2		84.136	83.417	2	0.00079124	74195	160511_QHF_FH_JSI11i_3	85.212	66.481			0.84705	1.158	15.187	6	6	Linear	0.97353	0.82723	14.374	2	2	Median	0.77101	0.91547	14.021	2	2	Median	0.93156	0.90436	25.05	2	2	Median	NaN	NaN	NaN	0	0	Median	551470000	263380000	288090000	136270000	63211000	73058000	143030000	72773000	70258000	272170000	127400000	144770000	0	0	0	54768	171	51592	332097;332098;332099;332100;332101;332102	447918;447919;447920;447921;447922;447923;447924	447918			7	
VIPVMLMGK	1	Unmodified	986.56568	0.56568029	3691	Q8TB61	SLC35B2	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	72.324	71.483	2	0.00052238	63139	160511_QHF_FH_JSI9i_2	79.116	44.308			0.93103	0.95308	13.325	8	0	Median	1.2322	1.0215	6.7747	2	0	Median	0.67239	0.82243	17.822	2	0	Median	0.88138	0.84803	4.9326	2	0	Median	0.9794	1.0271	3.4217	2	0	Median	808960000	386500000	422460000	153410000	62631000	90776000	162100000	83133000	78965000	260060000	123360000	136700000	233400000	117370000	116020000	54769	3691	51593	332103;332104;332105;332106;332107;332108;332109;332110	447925;447926;447927;447928;447929;447930;447931;447932;447933;447934;447935;447936;447937	447930			12	
VIQAGMFDQK	1	Unmodified	1135.5696	0.56957969	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.635	41.874	2	5.2639E-06	35931	160511_QHF_FH_JSI12i_2	111.06	80.499			1.3151	1.2312	17.619	2	0	Median	1.2741	1.087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3575	1.3946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	247040000	103210000	143830000	89466000	39145000	50321000	0	0	0	157570000	64062000	93508000	0	0	0	54770	1736;1737	51594	332111;332112;332113;332114	447938;447939;447940;447941	447938			4	
VIQAGMFDQKSSSHER	1	Acetyl (K)	1860.8788	0.87884559	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	1	0	0	1			By MS/MS		16	0									1			1		49.523	39.821	3	0.0006695	21603	160513_QHF_FH_JSI11Kac_6	62.475	57.157			0.60112	0.60428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60112	0.60428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7653900	5337500	2316400	0	0	0	0	0	0	7653900	5337500	2316400	0	0	0	54771	1736;1737	51595	332115	447942;447943	447942	1751		2	
VIQALAMK	1	Unmodified	872.51536	0.51535927	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.793	4	4	3							2	3	4	2	38.789	38.169	2	0.0018157	33993	160511_QHF_FH_JSI10i_1	97.071	50.72			0.91383	0.95583	54.671	11	6	Median	0.96841	0.79021	38.901	2	0	Median	0.67587	0.82996	72.827	3	2	Median	0.89644	0.88407	64.496	4	3	Median	1.3967	1.4708	32.43	2	1	Median	3052500000	1462800000	1589700000	495370000	229670000	265700000	808450000	421390000	387060000	1146600000	520290000	626340000	602010000	291430000	310580000	54772	1544	51596	332116;332117;332118;332119;332120;332121;332122;332123;332124;332125;332126	447944;447945;447946;447947;447948;447949;447950;447951	447948			8	
VIQAQTAFSANPANPAILSEASAPIPHDGNLYPR	0	Unmodified	3529.7954	0.79538054	151	O00560	SDCBP	Syntenin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.898	2	1	3								3	2	1	91.377	91.275	3;4	2.1879E-54	79148	160511_QHF_FH_JSI12i_3	164.17	154.46			1.0923	1.496	18.01	6	4	Linear	NaN	NaN	NaN	0	0	Median	0.9162	1.1439	8.3205	3	2	Plateau	1.2966	1.2162	7.7147	2	2	Median	1.6701	1.7103	NaN	1	0	Median	456080000	221930000	234150000	0	0	0	158290000	93210000	65084000	185820000	77309000	108510000	111970000	51414000	60556000	54773	151	51597	332127;332128;332129;332130;332131;332132	447952;447953;447954;447955;447956;447957;447958;447959;447960;447961	447961			10	
VIQATTYFLQKPVPGFEELK	2	Unmodified	2307.2515	0.25147024	1653	P49356	FNTB	Protein farnesyltransferase subunit beta	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	90.658	90.11	3	1.6008E-06	80246	160511_QHF_FH_JSI11i_3	91.414	82.706			1.0127	0.99238	17.031	4	2	Median	NaN	NaN	NaN	0	0	Median	0.96679	1.1293	26.481	2	2	Median	1.0323	0.98282	NaN	1	0	Median	0.99346	1.002	NaN	1	0	Median	107680000	55197000	52480000	0	0	0	19827000	10533000	9293800	36301000	18137000	18164000	51549000	26527000	25022000	54774	1653	51598	332133;332134;332135;332136	447962;447963;447964;447965	447962			4	
VIQCFAETGQVQK	1	Unmodified	1506.7501	0.75006325	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	5.61	9	7					6			3	6	8	5	41.322	37.955	2;3	3.2928E-10	34120	160511_QHF_FH_JSI11i_1	145.46	129.83			0.97931	0.99029	30.312	19	10	Median	1.0461	0.919	55.643	3	3	Median	0.89391	1.0485	23.17	6	2	Median	0.93915	0.93625	25.432	5	2	Median	1.2569	1.3464	27.622	5	3	Median	1880300000	927460000	952880000	218830000	94753000	124070000	566850000	274010000	292830000	653730000	326610000	327120000	440940000	232090000	208860000	54775	2155	51599	332137;332138;332139;332140;332141;332142;332143;332144;332145;332146;332147;332148;332149;332150;332151;332152;332153;332154;332155;332156;332157;332158	447966;447967;447968;447969;447970;447971;447972;447973;447974;447975;447976;447977;447978;447979;447980;447981;447982;447983;447984;447985;447986;447987;447988;447989;447990	447966			23	
VIQEIVDK	1	Unmodified	942.5386	0.53859714	1725;1726	P51114;P51116	FXR1;FXR2	Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	1	2	2	29.274	28.785	2	0.0035769	25397	160511_QHF_FH_JSI10i_1	71.501	23.653			1.4587	1.458	71.76	6	4	Median	1.4208	1.193	NaN	1	0	Median	1.4975	1.7819	NaN	1	0	Median	1.2413	1.1949	116.96	2	2	Median	1.3695	1.4645	103.55	2	2	Median	1921700000	780650000	1141000000	73193000	32725000	40468000	424120000	162410000	261710000	703130000	244410000	458720000	721250000	341100000	380140000	54776	1725;1726	51600	332159;332160;332161;332162;332163;332164	447991;447992;447993;447994;447995;447996	447995			6	
VIQELGLDK	1	Unmodified	1013.5757	0.57571092	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	42.47	41.857	2	0.00014554	37761	160511_QHF_FH_JSI11i_1	107.15	62.073			0.96186	0.97445	32.047	4	1	Median	0.95225	0.80179	NaN	1	0	Median	0.97156	1.1843	NaN	1	0	Median	0.71808	0.69886	NaN	1	1	Median	1.2962	1.381	NaN	1	0	Median	1066200000	552430000	513790000	64690000	27638000	37052000	276430000	139950000	136480000	383640000	207690000	175950000	341460000	177150000	164310000	54777	5445	51601	332165;332166;332167;332168;332169	447997;447998;447999;448000;448001;448002	447997			5	
VIQENEHALQK	1	Unmodified	1307.6834	0.68336389	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5		11	5				1	3		4	3	7	6	17.251	14.995	2;3	1.952E-06	12133	160511_QHF_FH_JSI11i_2	125.74	110.35			1.2218	1.2136	41.012	19	13	Median	1.4858	1.2488	31.066	4	2	Median	0.74252	0.92006	16.638	3	2	Median	1.2633	1.2313	46.559	6	5	Median	1.3861	1.4458	45.819	6	4	Median	1512800000	769990000	742840000	193690000	80149000	113540000	294490000	183120000	111370000	619370000	316630000	302740000	405270000	190080000	215190000	54778	4989	51602	332170;332171;332172;332173;332174;332175;332176;332177;332178;332179;332180;332181;332182;332183;332184;332185;332186;332187;332188;332189	448003;448004;448005;448006;448007;448008;448009;448010;448011;448012;448013;448014;448015;448016;448017;448018;448019;448020;448021;448022;448023;448024;448025;448026	448017			24	
VIQGDGVDINTLQEIVEGMK	1	Unmodified	2157.0987	0.098734352	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	3	2	2	101.75	101.66	2;3	3.4648E-185	92389	160511_QHF_FH_JSI11i_1	387.73	347.66			0.81425	0.8442	16.029	8	2	Median	0.91554	0.74587	NaN	1	0	Median	0.79519	0.93298	15.426	3	2	Median	0.91583	0.90268	14.035	2	0	Median	0.71445	0.76059	6.8895	2	0	Median	1139300000	631370000	507960000	52103000	26869000	25234000	501260000	308230000	193020000	339620000	162980000	176640000	246360000	133290000	113070000	54779	1566	51603	332190;332191;332192;332193;332194;332195;332196;332197	448027;448028;448029;448030;448031;448032	448027			6	
VIQGLYSGVTTVELDTLAAETAATLTTK	1	Unmodified	2865.5223	0.52228496	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.7	5.66	1	7							2	1	3	3	3	101.63	100.04	3;4	1.6693E-83	90207	160511_QHF_FH_JSI11i_2	237.63	229.19			0.90876	0.999	35.697	10	2	Median	1.2461	1.0995	NaN	1	0	Median	0.84565	1.0378	53.781	3	1	Median	0.97659	0.99434	13.703	3	0	Median	0.98417	1.0754	45.171	3	1	Plateau	1232700000	662230000	570510000	102260000	46563000	55701000	305610000	160690000	144920000	538360000	299400000	238960000	286500000	155570000	130930000	54780	1242	51604	332198;332199;332200;332201;332202;332203;332204;332205;332206;332207	448033;448034;448035;448036;448037;448038;448039;448040;448041;448042;448043	448037			10	
VIQGVLLCPHTHLQDVEKCIR	1	Unmodified	2514.3199	0.31991771	3718	Q8TD57	DNAH3	Dynein heavy chain 3, axonemal	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		81.978	81.498	3	0.017167	73092	160511_QHF_FH_JSI11i_3	30.767	23.888			1.0067	0.91995	10.32	4	0	Median	1.0143	0.86414	NaN	1	0	Median	0.73542	0.90641	NaN	1	0	Median	1.0329	1.0118	11.358	2	0	Median	NaN	NaN	NaN	0	0	Median	266990000	122240000	144740000	55267000	20022000	35246000	71531000	41929000	29601000	140190000	60294000	79894000	0	0	0	54781	3718	51605	332208;332209;332210;332211	448044;448045	448044			2	
VIQHNALEDR	0	Unmodified	1193.6153	0.61528433	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	1	1	4	3	15.017	11.649	2;3	7.8208E-06	9844	160511_QHF_FH_JSI12i_3	83.045	73.612			0.87127	0.92876	21.962	9	2	Median	1.5245	1.2745	NaN	1	0	Median	0.80578	0.92876	NaN	1	0	Median	0.83492	0.817	24.282	4	2	Median	0.87127	0.99134	15.796	3	0	Median	863890000	475260000	388630000	5165900	2372200	2793700	4649700	2644400	2005400	482050000	259870000	222180000	372020000	210370000	161650000	54782	409	51606	332212;332213;332214;332215;332216;332217;332218;332219;332220	448046;448047;448048;448049;448050;448051;448052;448053;448054	448052			9	
VIQIATSSSTAK	1	Unmodified	1204.6663	0.66631685	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8	6		3					3			1	3	2		36.052	26.576	2	0.00070045	23192	160511_QHF_FH_JSI10i_2	70.977	39.605			0.91898	1.0367	59.067	3	2	Median	NaN	NaN	NaN	0	0	Median	1.3915	1.6595	66.533	2	2	Median	0.91898	0.89397	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19651000	9337000	10314000	0	0	0	9397200	4385700	5011400	10254000	4951300	5302900	0	0	0	54783	3221	51607	332221;332222;332223;332224;332225;332226	448055;448056;448057;448058;448059;448060;448061	448061			7	
VIQIVLMR	0	Oxidation (M)	986.59467	0.59467223	2232	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	61.78	52.447	2	0.0053899	27439	160513_QHF_FH_JSI12Kac_6	74.439	37.345			1.0627	0.94319	11.059	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80692	0.94319	NaN	1	0	Median	1.0821	1.0641	NaN	1	0	Median	1.0627	1.1763	NaN	1	0	Median	53989000	24772000	29216000	0	0	0	24287000	11654000	12633000	15408000	6574800	8833200	14294000	6543600	7750300	54784	2232	51608	332227;332228;332229	448062;448063;448064	448063		1850	3	
VIQNIIYYK	1	Unmodified	1152.6543	0.6542956	3932	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		63.506	53.821	2	0.057519	29164	160513_QHF_FH_JSI11Kac_6	41.188	22.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54785	3932	51609	332230	448065	448065			1	
VIQPHGGGSNPLEGTQHLQDVPYVMVR	0	Unmodified	2927.4712	0.47120963	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	3	2	71.623	71.099	3;4	1.999E-26	63289	160511_QHF_FH_JSI10i_2	136.57	132.36			1.0055	1.1071	26.66	7	3	Median	1.0004	0.86604	NaN	1	0	Median	1.082	1.2809	20.626	2	1	Median	1.1126	1.0623	12.387	2	1	Median	0.92569	0.93635	47.534	2	1	Median	1187700000	606280000	581440000	79112000	35397000	43715000	196490000	120420000	76078000	509750000	218960000	290790000	402370000	231510000	170850000	54786	2493	51610	332231;332232;332233;332234;332235;332236;332237;332238	448066;448067;448068;448069;448070;448071;448072;448073;448074	448072			9	
VIQPHGGGSNPLEGTQHLQDVPYVMVR	0	Oxidation (M)	2943.4661	0.46612426	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	64.737	64.592	4	3.439E-05	57374	160511_QHF_FH_JSI11i_3	48.232	41.799			0.99036	0.96163	2.1313	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0152	0.94725	NaN	1	0	Median	0.96618	0.97623	NaN	1	1	Median	133120000	65587000	67538000	0	0	0	0	0	0	77411000	34831000	42581000	55713000	30756000	24958000	54787	2493	51610	332239;332240	448075;448076	448075		1976	1	
VIQPIFLGK	1	Unmodified	1013.6274	0.62735256	292	O15439	ABCC4	Multidrug resistance-associated protein 4	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	66.331	65.565	2	0.0037608	56364	160511_QHF_FH_JSI12i_3	58.917	11.069			1.2543	1.1707	24.473	4	0	Median	1.4876	1.2959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0576	1.0577	NaN	1	0	Median	1.0791	1.158	39.866	2	0	Median	130660000	59269000	71391000	30285000	11640000	18645000	0	0	0	45705000	19970000	25735000	54669000	27659000	27010000	54788	292	51611	332241;332242;332243;332244	448077;448078;448079	448079			3	
VIQPMGMSPR	0	Unmodified	1114.5627	0.56272017	4908	Q9NPQ8	RIC8A	Synembryn-A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	38.08	37.917	2	0.004856	32282	160511_QHF_FH_JSI12i_3	54.712	2.3097			1.8911	1.9492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8911	1.9492	NaN	1	0	Median	41089000	11039000	30050000	0	0	0	0	0	0	0	0	0	41089000	11039000	30050000	54789	4908	51612	332245	448080	448080			1	
VIQQESYTYK	1	Unmodified	1257.6241	0.62411768	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.79	4	4				1	3			2	3	3	4	28.242	24.762	2	4.1727E-14	22078	160511_QHF_FH_JSI12i_1	160.88	104.62			0.78995	0.84668	22.11	12	1	Median	1.0524	0.8922	13.561	2	0	Median	0.7607	0.9008	27.999	3	0	Median	0.78394	0.75711	24.093	3	0	Median	0.78995	0.84668	23.198	4	1	Median	1400000000	772710000	627260000	250500000	123310000	127180000	402920000	213120000	189800000	391440000	235740000	155700000	355120000	200540000	154580000	54790	1909	51613	332246;332247;332248;332249;332250;332251;332252;332253;332254;332255;332256;332257	448081;448082;448083;448084;448085;448086;448087;448088;448089;448090;448091;448092;448093;448094;448095;448096;448097;448098;448099;448100	448085			20	
VIQQLEGAFALVFK	1	Unmodified	1561.8868	0.88681473	2242;608	Q06210;O94808	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.86		6							9	5	4	3	3	97.456	92.63	2;3	3.0421E-30	89344	160511_QHF_FH_JSI11i_2	194.17	158.94			0.75035	0.73236	67.997	13	11	Median	0.90434	0.79263	74.281	4	4	Median	0.45207	0.54232	61.955	3	3	Median	1.1057	1.1216	77.62	3	2	Median	0.813	0.87379	42.382	3	2	Median	1780700000	1008100000	772620000	434780000	207610000	227160000	469390000	345040000	124350000	574930000	265090000	309840000	301580000	190320000	111270000	54791	2242;608	51614	332258;332259;332260;332261;332262;332263;332264;332265;332266;332267;332268;332269;332270;332271;332272	448101;448102;448103;448104;448105;448106;448107;448108;448109;448110;448111;448112;448113;448114;448115;448116;448117	448107			17	
VIQQSLEQEEAEHK	1	Unmodified	1666.8162	0.81622856	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			1	2	2	3	25.09	23.526	3	7.7474E-07	20056	160511_QHF_FH_JSI9i_2	123.29	104.08			0.64066	0.67318	28.25	8	5	Median	1.0036	0.85412	NaN	1	1	Median	0.45187	0.53582	24.212	2	2	Median	0.55296	0.53724	35.12	2	2	Median	0.65512	0.71397	19.423	3	0	Median	679220000	417040000	262190000	81892000	37810000	44082000	263450000	191390000	72062000	157430000	98199000	59235000	176440000	89635000	86807000	54792	475	51615	332273;332274;332275;332276;332277;332278;332279;332280	448118;448119;448120;448121;448122;448123;448124;448125	448124			8	
VIQSADSK	1	Unmodified	846.4447	0.44469675	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.11	4	2				1				1	3	2	1	5.8804	4.5587	2	0.00024549	3461	160511_QHF_FH_JSI12i_1	116.73	60.215			0.94485	1.0118	23.979	7	1	Median	1.3235	1.0455	NaN	1	0	Median	0.71529	0.85146	28.354	3	1	Median	1.1082	1.1	5.016	2	0	Median	0.94485	1.0118	NaN	1	0	Median	6319500000	3076900000	3242600000	1051300000	491170000	560150000	2009100000	1046100000	963030000	1705400000	728200000	977150000	1553700000	811480000	742230000	54793	127	51616	332281;332282;332283;332284;332285;332286;332287	448126;448127;448128;448129;448130;448131;448132;448133;448134	448127			9	
VIQTHPHANK	1	Unmodified	1143.6149	0.6148904	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	5.1886	4.9621	2;3	1.1556E-08	2831	160511_QHF_FH_JSI10i_3	121.05	59.049			0.56601	0.49341	92.896	4	2	Linear	1.0278	0.84069	148.52	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9658	1.791	NaN	1	0	Median	0.99482	1.0315	NaN	1	0	Median	460550000	345060000	115490000	378850000	309560000	69289000	0	0	0	34963000	12389000	22574000	46734000	23109000	23625000	54794	3312	51617	332288;332289;332290;332291;332292	448135;448136;448137;448138;448139	448136			4	
VIQVPPKK	2	Unmodified	907.58549	0.58548775	2374	Q13228	SELENBP1	Selenium-binding protein 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	16.122	16.174	3	0.0088904	12763	160511_QHF_FH_JSI12i_3	43.246	32.373			0.96925	1.0364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96925	1.0364	NaN	1	1	Median	70604000	36637000	33967000	0	0	0	0	0	0	0	0	0	70604000	36637000	33967000	54795	2374	51618	332293;332294;332295	448140;448141;448142	448142			3	
VIQWCTHHKDDPPPPEDDENK	2	Acetyl (K)	2598.1445	0.14451535	2057	P63208	SKP1	S-phase kinase-associated protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.915	37.241	4	0.0040565	20236	160513_QHF_FH_JSI11Kac_6	57.009	54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5649400	5649400	0	0	0	0	0	0	0	5649400	5649400	0	0	0	0	54796	2057	51619	332296	448143	448143	2122		1	
VIQYLAYVASSHK	1	Unmodified	1477.7929	0.79291434	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.2			16					8	17	11	11	10	9	64.082	58.23	2;3	4.2644E-24	47821	160511_QHF_FH_JSI9i_3	223.78	161.82			0.96793	0.94438	264.98	38	34	Median	1.2865	1.0875	280.51	10	10	Median	0.95958	1.1408	286.55	10	8	Median	1.0395	0.9848	264.71	10	9	Median	0.69835	0.71596	271.5	8	7	Median	30747000000	15234000000	15513000000	8025200000	3669200000	4356000000	8743300000	4728100000	4015200000	8533600000	3876000000	4657700000	5444500000	2960700000	2483800000	54797	1436	51620	332297;332298;332299;332300;332301;332302;332303;332304;332305;332306;332307;332308;332309;332310;332311;332312;332313;332314;332315;332316;332317;332318;332319;332320;332321;332322;332323;332324;332325;332326;332327;332328;332329;332330;332331;332332;332333;332334;332335;332336;332337	448144;448145;448146;448147;448148;448149;448150;448151;448152;448153;448154;448155;448156;448157;448158;448159;448160;448161;448162;448163;448164;448165;448166;448167;448168;448169;448170;448171;448172;448173;448174;448175;448176;448177;448178;448179;448180;448181;448182;448183;448184;448185;448186;448187;448188;448189;448190;448191;448192;448193;448194;448195;448196;448197;448198;448199;448200;448201;448202;448203;448204;448205;448206;448207	448176			64	
VIQYLAYVASSHKSK	2	Acetyl (K)	1734.9305	0.93047046	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									4		2	2		69.068	60.431	3	0.00023641	32826	160513_QHF_FH_JSI11Kac_6	106.36	95.722			5.121	0.045522	281.38	3	3	Plateau	NaN	NaN	NaN	0	0	Median	5.121	5.9177	NaN	1	1	Median	0.51375	0.49066	342.07	2	2	Median	NaN	NaN	NaN	0	0	Median	105020000	78281000	26744000	0	0	0	35652000	24281000	11370000	69373000	53999000	15373000	0	0	0	54798	1436	51621	332338;332339;332340;332341	448208;448209;448210;448211	448209	1416		4	
VIQYLTSNK	1	Unmodified	1064.5866	0.58660996	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	32.477	31.584	2	0.0045667	26650	160511_QHF_FH_JSI11i_2	66.692	54.737			1.5092	1.6401	108.78	5	5	Median	3.2889	2.8074	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2908	1.2785	76.542	2	2	Median	0.50988	0.5595	152.09	2	2	Median	269010000	135420000	133590000	39116000	12703000	26413000	0	0	0	156510000	78701000	77807000	73384000	44013000	29371000	54799	285	51622	332342;332343;332344;332345;332346	448212;448213;448214;448215;448216	448215			5	
VIRPLDQPSSFDATPYIK	1	Unmodified	2046.0786	0.078591257	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.37	5.51		7	8						4	6	5	4	4	70.542	68.005	2;3	6.4067E-23	59342	160511_QHF_FH_JSI12i_3	171.21	147.41			1.0091	0.99667	16.784	18	3	Median	1.1863	0.98686	14.98	5	1	Median	0.96263	1.1198	11.398	5	1	Median	1.0544	1.0042	8.5928	4	1	Median	0.77282	0.78038	14.195	4	0	Median	7078500000	3529000000	3549500000	1606100000	697480000	908590000	2020600000	1081500000	939120000	2572900000	1286700000	1286200000	878940000	463350000	415580000	54800	3343	51623	332347;332348;332349;332350;332351;332352;332353;332354;332355;332356;332357;332358;332359;332360;332361;332362;332363;332364;332365	448217;448218;448219;448220;448221;448222;448223;448224;448225;448226;448227;448228;448229;448230;448231;448232;448233;448234;448235;448236;448237;448238;448239;448240;448241;448242;448243;448244;448245;448246;448247;448248;448249;448250;448251;448252;448253;448254;448255;448256;448257;448258	448252			42	
VISAFFSYWITHILPEK	1	Unmodified	2050.0928	0.092784758	3370	Q86X53	ERICH1	Glutamate-rich protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.139	89.717	3	5.1904E-34	53727	160513_QHF_FH_JSI10Kac_6	174.23	156.37			0.93112	0.89237	79.401	4	0	Median	1.1626	0.97299	NaN	1	0	Median	0.68369	0.81843	NaN	1	0	Median	0.74577	0.70062	NaN	1	0	Median	3.659	3.9381	NaN	1	0	Median	771980000	388540000	383440000	198490000	91995000	106490000	259760000	137900000	121870000	171690000	106450000	65240000	142040000	52196000	89843000	54801	3370	51624	332366;332367;332368;332369	448259;448260;448261;448262;448263;448264;448265;448266	448265			8	
VISELNGK	1	Unmodified	858.48108	0.48108226	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.81	4	4	1			1		1		4	3	2	2	19.684	16.646	2	0.0040128	15345	160511_QHF_FH_JSI9i_1	69.998	25.306			1.8023	2.0172	63.459	11	7	Median	1.2822	1.0506	49.094	4	1	Median	2.0814	2.503	19.108	3	3	Median	2.9037	2.9253	42.274	2	2	Median	1.5148	1.6378	45.051	2	1	Median	13661000000	6165800000	7495400000	3180100000	1457900000	1722200000	3479200000	1631500000	1847600000	3463300000	1542400000	1920900000	3538600000	1533900000	2004700000	54802	836	51625	332370;332371;332372;332373;332374;332375;332376;332377;332378;332379;332380	448267;448268;448269;448270;448271;448272;448273;448274;448275;448276;448277;448278;448279	448275			13	
VISEPGEAEVFMTPEDFVR	0	Unmodified	2151.0194	0.019421398	4339	Q9BPX6	MICU1	Calcium uptake protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								2	2	2	2	95.304	95.161	2;3	1.1563E-23	86463	160511_QHF_FH_JSI12i_1	137.68	124.7			0.82207	0.87447	53.135	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1199	1.2733	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.60347	0.60058	NaN	1	1	Median	32347000	20805000	11542000	0	0	0	22079000	13206000	8873400	0	0	0	10268000	7599500	2668700	54803	4339	51626	332381;332382;332383;332384;332385;332386;332387;332388	448280;448281;448282;448283;448284;448285;448286;448287;448288;448289	448283			10	
VISESPPDQWEAR	0	Unmodified	1512.7209	0.72087161	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								2	4	3	3	45.381	44.648	2	1.6665E-66	40731	160511_QHF_FH_JSI12i_1	230.65	226.19			0.87371	0.96388	9.2292	8	6	Median	1.2182	1.0123	NaN	1	0	Median	0.79547	0.92198	11.849	3	3	Plateau	0.95528	0.93977	14.858	2	2	Median	0.87063	0.92831	4.5716	2	1	Median	1167000000	626950000	540060000	115460000	58764000	56698000	437140000	226110000	211030000	378010000	208180000	169830000	236400000	133900000	102500000	54804	3860	51627	332389;332390;332391;332392;332393;332394;332395;332396;332397;332398;332399;332400	448290;448291;448292;448293;448294;448295;448296;448297;448298;448299;448300;448301;448302;448303;448304;448305;448306;448307;448308;448309	448298			20	
VISEYQK	1	Unmodified	865.45453	0.45453316	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.808	12.385	2	0.035999	9997	160511_QHF_FH_JSI11i_1	49.358	21.252			0.88799	0.86443	21.703	4	0	Median	1.0283	0.83705	NaN	1	0	Median	0.7668	0.8927	NaN	1	0	Median	1.1144	1.1032	NaN	1	0	Median	0.61915	0.6513	NaN	1	0	Median	1424400000	722520000	701930000	284630000	146220000	138410000	376130000	208770000	167360000	444030000	185450000	258590000	319650000	182080000	137570000	54805	4943	51628	332401;332402;332403;332404	448310	448310			1	
VISFEEQVASIR	0	Unmodified	1376.73	0.72997974	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	67.727	66.83	2	6.4799E-09	57560	160511_QHF_FH_JSI12i_2	141.1	112.37			0.94439	1.0428	5.8582	4	0	Median	1.2305	1.0469	NaN	1	0	Median	0.87338	1.0888	NaN	1	0	Median	1.0212	1.0388	NaN	1	0	Median	0.86196	0.94804	NaN	1	0	Median	838830000	440780000	398050000	144680000	63067000	81616000	173550000	100690000	72855000	273940000	144640000	129310000	246650000	132390000	114270000	54806	4411	51629	332405;332406;332407;332408	448311;448312;448313;448314;448315;448316;448317	448312			7	
VISFIENTSTPVDR	0	Unmodified	1576.8097	0.80968662	5019	Q9NUY8	TBC1D23	TBC1 domain family member 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		62.664	61.892	2	2.0384E-07	53828	160511_QHF_FH_JSI11i_2	94.767	78.135			1.1351	0.95804	48.982	3	2	Plateau	1.0973	0.90267	NaN	1	0	Median	1.904	2.4016	NaN	1	1	Median	1.4799	1.533	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73176000	31045000	42131000	25978000	10988000	14990000	11568000	3893300	7675000	35630000	16164000	19466000	0	0	0	54807	5019	51630	332409;332410;332411;332412	448318;448319;448320;448321	448320			4	
VISGHLGWVR	0	Unmodified	1122.6298	0.62981218	350	O43660	PLRG1	Pleiotropic regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	50.895	41.487	2;3	0.0022452	22083	160513_QHF_FH_JSI9Kac_6	50.194	33.523			1.1423	1.2104	4.6192	5	0	Median	1.4171	1.2104	NaN	1	0	Median	1.0464	1.2434	NaN	1	0	Median	1.1734	1.1481	4.9032	2	0	Median	1.1423	1.2369	NaN	1	0	Median	74965000	35552000	39413000	33353000	14219000	19134000	10347000	5263200	5083700	22752000	11325000	11427000	8513600	4744600	3769000	54808	350	51631	332413;332414;332415;332416;332417	448322;448323;448324;448325;448326;448327	448324			6	
VISGVLQLGNIVFK	1	Unmodified	1485.8919	0.89190011	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.53		2	11						10	8	6	5	4	97.053	93.274	2;3	6.1173E-81	90361	160511_QHF_FH_JSI11i_3	225.31	203.22			0.76764	0.79419	24.174	13	13	Median	0.91875	0.75081	20.851	4	4	Median	0.67932	0.79092	10.085	4	4	Median	0.76764	0.74736	34.627	3	3	Median	1.102	1.1369	15.884	2	2	Median	13094000000	7058100000	6035400000	2528600000	1288200000	1240400000	3310300000	1896800000	1413500000	2697700000	1311700000	1386000000	4556900000	2561400000	1995600000	54809	1436	51632	332418;332419;332420;332421;332422;332423;332424;332425;332426;332427;332428;332429;332430;332431;332432;332433;332434;332435;332436;332437;332438;332439;332440	448328;448329;448330;448331;448332;448333;448334;448335;448336;448337;448338;448339;448340;448341;448342;448343;448344;448345;448346;448347;448348;448349;448350	448329			23	
VISGVLQLGNIVFKK	2	Unmodified	1613.9869	0.98686312	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4		3	4	3	90.736	87.172	2;3	1.2034E-53	43110	160513_QHF_FH_JSI11Kac_6	186.81	149.47			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54810	1436	51633	332441;332442;332443;332444;332445;332446;332447;332448;332449;332450	448351;448352;448353;448354;448355;448356;448357;448358;448359;448360	448356			10	
VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK	1	Oxidation (M)	3756.8629	0.86286776	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		70.063	70.063	4	1.5433E-05	62331	160511_QHF_FH_JSI11i_3	42.582	37.773			1.011	0.96997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.011	0.96997	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42247000	18372000	23875000	0	0	0	0	0	0	42247000	18372000	23875000	0	0	0	54811	1372	51634	332451	448361;448362	448361		1013	2	
VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK	1	Unmodified	3740.868	0.86795314	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	0.499		8	9							4	8	3	2	76.163	75.447	4;5	5.4241E-47	66098	160511_QHF_FH_JSI11i_3	149.49	147.83			0.96328	0.95908	28.026	17	8	Median	1.1427	0.98915	15.65	4	3	Linear	0.84039	1.0135	37.077	8	4	Median	0.99607	0.94327	6.0129	3	1	Plateau	0.88799	0.89862	3.4945	2	0	Median	1434800000	709830000	724980000	126430000	40297000	86128000	326440000	185910000	140530000	712140000	335090000	377050000	269800000	148530000	121270000	54812	1372	51634	332452;332453;332454;332455;332456;332457;332458;332459;332460;332461;332462;332463;332464;332465;332466;332467;332468	448363;448364;448365;448366;448367;448368;448369;448370;448371;448372;448373;448374;448375;448376;448377;448378;448379;448380;448381;448382;448383;448384;448385;448386;448387;448388;448389;448390;448391;448392;448393;448394;448395;448396;448397;448398;448399	448368			37	
VISHPTLPISITAHEDR	0	Unmodified	1885.0058	0.005760665	381	O43815	STRN	Striatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			5							2	1	1	1	56.073	55.093	3;4	3.1564E-05	46206	160511_QHF_FH_JSI10i_3	77.13	65.754			1.2682	1.1067	12.364	5	1	Median	1.4654	1.2048	12.014	2	1	Median	0.84483	0.93489	NaN	1	0	Median	1.2682	1.1582	NaN	1	0	Median	1.0307	1.0613	NaN	1	0	Median	243760000	113330000	130430000	72120000	24727000	47393000	29303000	16651000	12652000	92251000	45970000	46282000	50083000	25982000	24102000	54813	381	51635	332469;332470;332471;332472;332473	448400;448401;448402;448403;448404	448402			5	
VISHYAGQDATDPFVAFHINK	1	Unmodified	2329.1491	0.14913044	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	71.084	70.439	4	7.9964E-11	62470	160511_QHF_FH_JSI11i_3	112.58	102.08			0.96442	1.0057	12.631	5	0	Median	1.1843	1.0057	NaN	1	0	Median	0.64084	0.78774	NaN	1	0	Median	0.96442	0.92937	NaN	1	0	Median	0.99909	1.0635	2.459	2	0	Median	622930000	289050000	333890000	29039000	15461000	13578000	45964000	28893000	17071000	237930000	103810000	134120000	310000000	140880000	169120000	54814	415	51636	332474;332475;332476;332477;332478	448405;448406;448407;448408	448406			4	
VISKHDLGHFMLR	1	Acetyl (K)	1593.845	0.84496669	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		70.655	62.108	4	8.2167E-05	34021	160513_QHF_FH_JSI10Kac_6	85.42	72.587			0.67254	0.71264	148.29	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7304	2.0336	NaN	1	0	Median	0.26139	0.24974	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	172760000	112640000	60118000	0	0	0	45351000	14397000	30954000	127410000	98242000	29164000	0	0	0	54815	1334	51637	332479;332480	448409;448410;448411	448410	1263		3	
VISKPISEHK	2	Unmodified	1136.6554	0.65535823	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							1	4	1	2	9.1954	8.8453	2;3;4	0.00092668	6604	160511_QHF_FH_JSI9i_3	61.353	39.307			0.87238	0.84399	84.926	8	7	Median	1.1918	0.95883	NaN	1	0	Median	0.87253	0.9964	62.124	4	4	Median	0.5883	0.54218	NaN	1	1	Median	0.89836	0.9216	190.02	2	2	Median	1029000000	528170000	500870000	175950000	77936000	98013000	409800000	211470000	198330000	149840000	77455000	72382000	293450000	161310000	132140000	54816	1225	51638	332481;332482;332483;332484;332485;332486;332487;332488	448412;448413;448414;448415;448416;448417;448418;448419;448420	448418			9	
VISLEDFMEK	1	Unmodified	1209.5951	0.59512574	4711	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	83.822	83.054	2	0.00041837	71686	160511_QHF_FH_JSI12i_2	89.047	77.2			1.1335	1.1621	4.0982	3	2	Plateau	1.3311	1.1547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1335	1.1621	NaN	1	0	Median	0.96415	1.0792	NaN	1	1	Median	244480000	116530000	127950000	78642000	38168000	40474000	0	0	0	94562000	46907000	47656000	71272000	31453000	39819000	54817	4711	51639	332489;332490;332491	448421;448422;448423;448424	448421			4	
VISPSEDRK	1	Unmodified	1029.5455	0.54547343	1112	P17252	PRKCA	Protein kinase C alpha type	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		7.7187	7.7187	3	0.026169	5414	160511_QHF_FH_JSI11i_3	26.786	13.749			1.1031	1.0491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1031	1.0491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56372000	29356000	27016000	0	0	0	0	0	0	56372000	29356000	27016000	0	0	0	54818	1112	51640	332492	448425	448425			1	
VISSANR	0	Unmodified	745.40825	0.40825167	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.44	3	3	4			1	1	5	2	7	4	6	2	6.0306	1.1861	2	0.0016993	2676	160511_QHF_FH_JSI12i_3	117.7	50.705			1.0766	1.0561	33.412	19	0	Median	1.2168	1.019	53.217	7	0	Median	0.93947	1.0981	13.903	4	0	Median	1.0867	1.0647	9.6193	6	0	Median	0.91905	0.984	7.4994	2	0	Median	26906000000	12786000000	14120000000	5491600000	2529200000	2962300000	8699500000	4381600000	4317900000	9819000000	4545700000	5273300000	2895500000	1329400000	1566100000	54819	2039	51641	332493;332494;332495;332496;332497;332498;332499;332500;332501;332502;332503;332504;332505;332506;332507;332508;332509;332510;332511	448426;448427;448428;448429;448430;448431;448432;448433;448434;448435;448436;448437;448438;448439;448440;448441;448442;448443;448444;448445;448446	448445			21	
VISSIEQKTDTSDK	2	Acetyl (K)	1591.7941	0.79409613	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13	0						2						1	1	45.979	36.861	2	0.00056434	20640	160513_QHF_FH_JSI11Kac_3	103.34	75.329			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2727400	2727400	0	0	0	0	0	0	0	1742600	1742600	0	984790	984790	0	54820	1288	51642	332512;332513	448447;448448	448447	1216		2	
VISSIEQKTER	1	Acetyl (K)	1330.7092	0.70924429	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	43.47	33.456	2	0.013968	19672	160513_QHF_FH_JSI12Kac_4	54.982	30.206			0.73882	0.80052	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73882	0.80052	NaN	1	0	Median	3664300	2563800	1100500	0	0	0	0	0	0	0	0	0	3664300	2563800	1100500	54821	1384	51643	332514	448449	448449	1328		1	
VISSIEQKTERNEKK	3	Acetyl (K)	1829.9847	0.98469087	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	1	0	0	3			By MS/MS		16	0									1			1		97.709	88.303	3	0.031804	50447	160513_QHF_FH_JSI11Kac_6	35.891	14.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61508000	61508000	0	0	0	0	0	0	0	61508000	61508000	0	0	0	0	54822	1384	51644	332515	448450	448450	1328		1	
VISSVSYYTHR	0	Unmodified	1310.6619	0.66190017	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.9	5.95			4					1	8	4	5	2	2	37.268	30.478	2;3	3.4546E-15	16462	160513_QHF_FH_JSI9Kac_6	143	137.9			1.0011	1.1066	15.803	13	2	Median	1.3494	1.1204	6.9106	4	0	Median	0.92319	1.1066	23.508	5	2	Median	1.1473	1.1183	2.6717	2	0	Median	0.88606	0.96384	5.1939	2	0	Median	1063700000	527090000	536580000	407960000	172360000	235600000	490190000	276160000	214030000	117380000	57276000	60105000	48146000	21304000	26843000	54823	3921	51645	332516;332517;332518;332519;332520;332521;332522;332523;332524;332525;332526;332527;332528	448451;448452;448453;448454;448455;448456;448457;448458;448459;448460;448461;448462;448463;448464	448460			14	
VISTMSVGIDHLALDEIK	1	Unmodified	1940.0289	0.028863873	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	86.204	85.523	3	2.1016E-07	75983	160511_QHF_FH_JSI10i_2	112.74	94.141			1.0481	1.0904	7.4687	4	0	Median	1.2886	1.089	NaN	1	0	Median	0.78968	0.95428	NaN	1	0	Median	1.0836	1.0919	NaN	1	0	Median	1.0139	1.1306	NaN	1	0	Median	331310000	160550000	170760000	53943000	24115000	29827000	55755000	30006000	25749000	122830000	53087000	69738000	98787000	53338000	45450000	54824	5249	51646	332529;332530;332531;332532	448465;448466;448467;448468;448469;448470	448469			5	
VISTMSVGIDHLALDEIKK	2	Unmodified	2068.1238	0.12382689	5249	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	76.902	76.717	3;4	1.96E-16	66584	160511_QHF_FH_JSI12i_3	169.25	160.16			1.0313	1.0421	32.656	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64784	0.62629	NaN	1	1	Median	1.0981	1.0953	7.0478	2	1	Median	212930000	102640000	110280000	0	0	0	0	0	0	62307000	32059000	30247000	150620000	70583000	80037000	54825	5249	51647	332533;332534;332535	448471;448472;448473	448473			3	
VISVSTSER	0	Unmodified	976.51892	0.51892433	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	15	0								2			1		1	4.9139	-4.5138	3	0.0010477	1406	160513_QHF_FH_JSI12Kac_5	65.224	0			0.03318	0.038411	102.39	2	2	Median	NaN	NaN	NaN	0	0	Median	0.015686	0.018622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.070183	0.07923	NaN	1	1	Median	10918000	10741000	176490	0	0	0	4649200	4598600	50654	0	0	0	6268600	6142800	125840	54826	3100	51648	332536;332537	448474;448475	448474			2	
VISYEEGK	1	Unmodified	923.46001	0.46001246	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	20.345	16.372	2	0.0047856	13825	160511_QHF_FH_JSI11i_1	66.073	43.942			1.0512	1.1471	22.261	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80867	0.98007	NaN	1	1	Median	1.3665	1.3427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	285820000	144410000	141410000	0	0	0	272870000	138560000	134310000	12942000	5845400	7096400	0	0	0	54827	2660	51649	332538;332539;332540;332541;332542	448476;448477;448478;448479;448480	448476			5	
VISYLEGEAVR	0	Unmodified	1234.6558	0.65575216	1821	P54277	PMS1	PMS1 protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.25	0.433		3	1							1	1		2	16.466	15.853	3	0.049391	13204	160511_QHF_FH_JSI9i_2	14.876	4.5675			0.67123	0.6446	118.41	4	0	Median	1.1165	0.9555	NaN	1	0	Median	2.3153	2.898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.26568	0.27859	62.971	2	0	Median	457110000	273760000	183350000	137400000	61160000	76236000	107340000	31357000	75982000	0	0	0	212380000	181240000	31133000	54828	1821	51650	332543;332544;332545;332546	448481	448481			1	
VITDIAGVIPAEK	1	Unmodified	1324.7602	0.76021723	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	69.473	68.937	2	4.88E-05	61127	160511_QHF_FH_JSI9i_1	112.13	82.382			1.1074	1.0022	28.45	6	5	Median	1.0157	0.83669	NaN	1	0	Median	1.2074	1.4093	NaN	1	1	Median	0.99227	0.97357	29.637	2	2	Median	0.94597	0.97699	40.684	2	2	Median	1028800000	523330000	505480000	169210000	75472000	93742000	148150000	70713000	77436000	370910000	189730000	181180000	340530000	187410000	153110000	54829	1428	51651	332547;332548;332549;332550;332551;332552	448482;448483;448484;448485;448486;448487;448488	448488			7	
VITDPSLSKTDSYKR	2	Acetyl (K)	1750.9101	0.91012895	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			35.979	27.459	3	0.024167	15467	160513_QHF_FH_JSI10Kac_6	50.843	27.705			0.15537	0.18427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15537	0.18427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18155000	17529000	625730	0	0	0	18155000	17529000	625730	0	0	0	0	0	0	54830	4936	51652	332553	448489	448489	3272		1	
VITDVYYVDGTEVER	0	Unmodified	1756.8519	0.85194536	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	59.952	59.342	2	4.9955E-10	53625	160511_QHF_FH_JSI10i_1	150.68	125.89			1.0764	0.99709	12.226	6	4	Median	1.1435	0.92341	NaN	1	0	Median	0.77722	0.91162	NaN	1	0	Median	1.1727	1.1462	11.385	2	2	Median	0.98478	1.016	10.979	2	2	Median	343650000	177740000	165910000	60818000	28397000	32421000	72830000	46295000	26534000	111410000	50651000	60760000	98590000	52395000	46195000	54831	2320	51653	332554;332555;332556;332557;332558;332559	448490;448491;448492;448493;448494;448495;448496	448495			7	
VITEEEK	1	Unmodified	846.43346	0.43346336	1275	P26373	RPL13	60S ribosomal protein L13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	9.9833	6.1331	2	0.0029926	4364	160513_QHF_FH_JSI12Kac_3	101.64	53.795			0.93726	1.0305	15.878	8	0	Median	1.2701	1.1404	NaN	1	0	Median	0.88997	1.0305	2.1899	2	0	Median	1.1086	1.0909	10.597	3	0	Median	0.78548	0.8332	24.112	2	0	Median	26894000000	11821000000	15074000000	6720700000	2176700000	4544000000	7871000000	3696700000	4174300000	6501000000	3065700000	3435300000	5801500000	2881500000	2920000000	54832	1275	51654	332560;332561;332562;332563;332564;332565;332566;332567	448497;448498;448499;448500;448501;448502;448503;448504;448505;448506	448503			10	
VITESTVHLIQLLENYKK	2	Unmodified	2127.194	0.19395537	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	93.511	92.93	4	4.5779E-05	79995	160511_QHF_FH_JSI12i_3	68.41	59.81			0.86186	0.91603	17.949	4	0	Median	1.2412	1.0418	NaN	1	0	Median	0.87961	1.0213	NaN	1	0	Median	0.84446	0.82162	NaN	1	0	Median	0.69317	0.71735	NaN	1	0	Median	150790000	67281000	83507000	15357000	6253700	9102900	31487000	11496000	19991000	63077000	24444000	38633000	40868000	25087000	15781000	54833	682	51655	332568;332569;332570;332571;332572	448507;448508;448509;448510;448511	448511			5	
VITEYLNAQESAK	1	Unmodified	1464.746	0.74602373	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.29	4	4	4				1			3	4	3	3	46.395	44.811	2	6.4329E-41	40599	160511_QHF_FH_JSI11i_1	203.83	148.26			0.81958	0.84694	20.265	13	2	Median	0.75591	0.63029	17.439	3	0	Median	0.81777	0.97734	15.823	4	0	Median	0.85312	0.82564	10.395	3	1	Median	0.79944	0.84694	8.5476	3	1	Median	3552600000	1821200000	1731400000	609010000	340290000	268720000	956370000	504720000	451650000	984890000	522720000	462170000	1002300000	453460000	548880000	54834	3213	51656	332573;332574;332575;332576;332577;332578;332579;332580;332581;332582;332583;332584;332585	448512;448513;448514;448515;448516;448517;448518;448519;448520;448521;448522;448523;448524;448525;448526;448527;448528;448529;448530;448531;448532;448533;448534;448535;448536;448537;448538;448539;448540;448541;448542;448543;448544;448545;448546;448547	448516			35	
VITFANQDDYISFR	0	Unmodified	1687.8206	0.82058566	4081	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	79.288	78.086	2	0.00096178	69020	160511_QHF_FH_JSI9i_2	64.439	40.147			0.90036	0.99797	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90036	0.99797	NaN	1	0	Median	20153000	11066000	9086900	0	0	0	0	0	0	0	0	0	20153000	11066000	9086900	54835	4081	51657	332586;332587	448548;448549	448549			2	
VITFIDLAGHEK	1	Unmodified	1341.7293	0.72925145	103	O00178	GTPBP1	GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	66.361	65.53	3	9.2991E-06	56623	160511_QHF_FH_JSI12i_2	103.14	90.34			0.89868	0.93983	35.042	5	4	Median	1.1562	1.0084	NaN	1	1	Median	0.97236	1.2047	NaN	1	1	Median	0.6602	0.67578	46.644	2	2	Median	0.67361	0.74134	NaN	1	0	Median	361720000	197570000	164140000	57115000	25089000	32026000	79835000	46093000	33742000	164820000	96882000	67938000	59947000	29510000	30437000	54836	103	51658	332588;332589;332590;332591;332592	448550;448551;448552;448553;448554	448550			5	
VITIMQNPR	0	Oxidation (M)	1086.5856	0.5855641	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	4.58		1	3			1	6	8	5	5	5	7	7	31.172	23.072	2	1.1434E-08	20273	160511_QHF_FH_JSI12i_2	153.71	149.3			0.96059	1.04	26.041	24	2	Median	1.325	1.1191	4.1384	5	0	Median	0.90281	1.0677	6.4745	5	0	Median	1.0066	0.95297	22.31	7	1	Median	0.45191	0.46494	38.502	7	1	Linear	1961100000	1297900000	663240000	107420000	42884000	64535000	68061000	37310000	30751000	753670000	460200000	293470000	1031900000	757460000	274480000	54837	1993	51659	332593;332594;332595;332596;332597;332598;332599;332600;332601;332602;332603;332604;332605;332606;332607;332608;332609;332610;332611;332612;332613;332614;332615;332616	448555;448556;448557;448558;448559;448560;448561;448562;448563;448564;448565;448566;448567;448568;448569;448570;448571;448572;448573;448574;448575;448576;448577;448578;448579;448580	448557		1660	26	
VITIMQNPR	0	Unmodified	1070.5906	0.59064948	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.55	3	4	4				3	4	4	5	5	6	6	43.902	38.733	2	2.0464E-08	34147	160511_QHF_FH_JSI11i_3	150.84	130.32			0.96005	1.0737	44.611	21	1	Median	1.3589	1.141	23.492	5	0	Median	0.95234	1.139	4.7401	5	0	Median	0.98694	0.93257	84.483	5	1	Median	0.9501	1.0214	12.328	6	0	Median	19683000000	9678100000	10004000000	2738900000	1148700000	1590300000	3941700000	1895400000	2046400000	6448700000	3227800000	3221000000	6553200000	3406300000	3146900000	54838	1993	51659	332617;332618;332619;332620;332621;332622;332623;332624;332625;332626;332627;332628;332629;332630;332631;332632;332633;332634;332635;332636;332637;332638	448581;448582;448583;448584;448585;448586;448587;448588;448589;448590;448591;448592;448593;448594;448595;448596;448597;448598;448599;448600;448601;448602;448603;448604;448605;448606;448607;448608;448609;448610;448611;448612;448613;448614;448615;448616;448617;448618;448619	448582			39	
VITLMDAPGHK	1	Unmodified	1180.6274	0.62742892	5610	Q9Y450	HBS1L	HBS1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		39.835	39.014	3	2.2271E-05	33403	160511_QHF_FH_JSI11i_2	68.107	60.708			0.78783	0.80175	41.192	3	1	Median	0.61296	0.53714	NaN	1	1	Median	0.99753	1.2241	NaN	1	0	Median	0.78783	0.80175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	177090000	95612000	81474000	33378000	19499000	13880000	58639000	25842000	32798000	85068000	50271000	34797000	0	0	0	54839	5610	51660	332639;332640;332641	448620;448621;448622	448621			3	
VITMFVQR	0	Unmodified	992.54772	0.54772204	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	5.88		1	4				2	4	4	5	4	3	3	57.863	50.667	2	0.00023078	25724	160513_QHF_FH_JSI10Kac_5	117.93	84.196			0.9525	0.96223	25.975	15	4	Median	1.1205	0.96223	30.751	5	3	Median	0.86723	1.0506	15.919	4	0	Median	0.99979	0.98248	11.206	3	0	Median	0.62944	0.65154	35.617	3	1	Plateau	6875700000	3463200000	3412500000	2081300000	982550000	1098700000	2758600000	1328000000	1430600000	666330000	309180000	357160000	1369500000	843460000	526040000	54840	1024	51661	332642;332643;332644;332645;332646;332647;332648;332649;332650;332651;332652;332653;332654;332655;332656	448623;448624;448625;448626;448627;448628;448629;448630;448631;448632;448633;448634;448635;448636;448637;448638;448639	448632			17	
VITMFVQR	0	Oxidation (M)	1008.5426	0.54263666	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.829							2	2	4	1	3	2	2	43.924	34.264	2	0.059771	18664	160513_QHF_FH_JSI11Kac_6	37.974	23.46			0.91612	0.9939	8.1357	8	0	Median	1.3024	1.1087	NaN	1	0	Median	0.82465	0.98446	7.0779	3	0	Median	0.99783	0.94797	9.9896	2	0	Median	0.87823	0.95384	7.1663	2	0	Median	303530000	154300000	149230000	61276000	27122000	34154000	117680000	63397000	54282000	65123000	32114000	33009000	59452000	31670000	27781000	54841	1024	51661	332657;332658;332659;332660;332661;332662;332663;332664	448640;448641	448640			2	
VITNQYNNPAGLYSSENISNFNNALESK	1	Unmodified	3100.4738	0.47377163	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	83.604	83.003	3	3.6252E-97	75413	160511_QHF_FH_JSI10i_1	240.46	237.97			0.88202	0.9414	19.543	7	0	Median	1.0494	0.89609	27.723	2	0	Median	0.70533	0.84079	15.983	2	0	Median	1.1778	1.1634	NaN	1	0	Median	0.87167	0.93289	23.194	2	0	Median	1369800000	670740000	699030000	251310000	117360000	133950000	407900000	232450000	175440000	409020000	167180000	241840000	301550000	153740000	147810000	54842	98	51662	332665;332666;332667;332668;332669;332670;332671	448642;448643;448644;448645;448646;448647;448648;448649;448650;448651;448652;448653;448654;448655;448656;448657;448658;448659;448660;448661;448662;448663	448654			22	
VITSAWWVYHHQVSK	1	Unmodified	1839.942	0.9420382	426	O60524	NEMF	Nuclear export mediator factor NEMF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									13	6	2	2	3	63.124	53.951	3;4	4.9374E-24	29046	160513_QHF_FH_JSI10Kac_6	147.24	139.52			0.97362	0.89351	19.22	11	2	Median	0.97362	0.83168	24.242	5	2	Median	0.74279	0.88312	1.6538	2	0	Median	0.99461	0.95249	6.1488	2	0	Median	1.0725	1.1317	4.8892	2	0	Median	1697300000	741160000	956140000	441110000	201490000	239620000	805290000	349610000	455680000	317000000	135700000	181300000	133900000	54361000	79535000	54843	426	51663	332672;332673;332674;332675;332676;332677;332678;332679;332680;332681;332682;332683;332684	448664;448665;448666;448667;448668;448669;448670;448671;448672;448673;448674;448675;448676;448677;448678;448679;448680;448681;448682;448683;448684;448685;448686;448687;448688;448689;448690;448691;448692;448693;448694;448695;448696;448697	448694			34	
VITVDGNICTGK	1	Unmodified	1275.6493	0.64928657	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.264	39.652	2	0.0040097	35977	160511_QHF_FH_JSI12i_1	56.725	31.151			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54844	675	51664	332685	448698	448698			1	
VIVAVGDR	0	Unmodified	827.4865	0.48650199	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		4								1	1	1	1	27.733	26.83	2	0.020907	22463	160511_QHF_FH_JSI12i_2	45.382	21.409			0.76726	0.9549	4.983	4	0	Linear	1.0625	0.92883	NaN	1	0	Median	0.80388	0.98171	NaN	1	0	Median	0.88122	0.88571	NaN	1	0	Median	0.87073	0.9824	NaN	1	0	Median	451930000	235320000	216620000	104430000	52998000	51432000	125160000	70699000	54463000	108380000	48445000	59935000	113960000	63173000	50788000	54845	3734	51665	332686;332687;332688;332689	448699	448699			1	
VIVDFSSPNIAK	1	Unmodified	1288.7027	0.70270235	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.3	4	6	2				2			3	4	4	3	65.408	63.244	2	1.1061E-05	56352	160511_QHF_FH_JSI9i_1	117.7	74.615			0.88466	0.91709	13.857	14	5	Median	1.3016	1.083	14.799	3	2	Plateau	0.88466	1.0086	6.6027	4	1	Median	0.86661	0.85981	20.557	4	2	Median	0.8206	0.88174	7.6197	3	0	Median	2920300000	1532100000	1388200000	588610000	281660000	306940000	603290000	315590000	287700000	1203800000	640300000	563550000	524540000	294540000	230000000	54846	1818	51666	332690;332691;332692;332693;332694;332695;332696;332697;332698;332699;332700;332701;332702;332703	448700;448701;448702;448703;448704;448705;448706;448707;448708;448709;448710;448711;448712;448713;448714;448715;448716;448717;448718	448711			18	
VIVEHAR	0	Unmodified	822.47119	0.47118627	2263;2378	Q08170;Q13247	SRSF4;SRSF6	Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.81		4	2						5	2	2	3	4	7.8589	4.3252	2	0.0041464	4826	160511_QHF_FH_JSI11i_3	99.919	73.811			1.1235	1.0676	32.198	11	0	Median	1.2315	1.0393	5.4668	2	0	Median	0.86186	1.0434	4.4962	2	0	Median	1.1541	1.1368	3.986	3	0	Median	0.83723	0.91836	51.129	4	0	Median	3356400000	1564100000	1792300000	339900000	129080000	210820000	512040000	312590000	199450000	1069800000	512600000	557180000	1434600000	609790000	824830000	54847	2263;2378	51667	332704;332705;332706;332707;332708;332709;332710;332711;332712;332713;332714	448719;448720;448721;448722;448723;448724;448725;448726;448727;448728;448729;448730	448720			12	
VIVESASNIPK	1	Unmodified	1155.6499	0.6499385	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	37.776	37.075	2	0.00018239	32674	160511_QHF_FH_JSI9i_1	81.95	39.663			1.0827	1.0796	15.997	7	0	Median	1.0582	0.89935	23.806	2	0	Median	0.85127	1.0159	8.6065	2	0	Median	1.2197	1.186	0.80118	2	0	Median	1.0827	1.1587	NaN	1	0	Median	1173600000	528560000	645010000	240150000	95676000	144470000	307590000	160080000	147510000	362120000	151670000	210450000	263710000	121130000	142580000	54848	5161	51668	332715;332716;332717;332718;332719;332720;332721	448731;448732;448733;448734;448735;448736;448737;448738	448737			8	
VIVFDGVPSK	1	Unmodified	1059.5964	0.59644637	1945	P61221	ABCE1	ATP-binding cassette sub-family E member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	3	2	3	55.949	55.145	2	0.00031818	49827	160511_QHF_FH_JSI11i_1	78.264	68.126			0.85792	0.89316	7.8414	8	4	Median	0.99354	0.82983	14.385	2	1	Median	0.74228	0.88727	7.5207	2	1	Median	0.89887	0.89316	2.8241	2	1	Median	0.84274	0.90461	8.329	2	1	Median	1091500000	662300000	429230000	217860000	132390000	85463000	266350000	162300000	104050000	387300000	234020000	153280000	220010000	133580000	86430000	54849	1945	51669	332722;332723;332724;332725;332726;332727;332728;332729;332730;332731;332732	448739;448740;448741;448742;448743;448744;448745;448746;448747;448748;448749;448750;448751;448752;448753	448739			15	
VIVGGSSEYK	1	Unmodified	1037.5393	0.53932542	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								3	2	2	2	23.009	22.261	2	0.00024745	18404	160511_QHF_FH_JSI12i_2	80.438	38.786			0.96411	1.0471	15.1	9	0	Median	1.2603	1.0722	16.891	3	0	Plateau	0.84499	1.0252	7.8275	2	0	Median	1.1478	1.1468	12.866	2	0	Median	0.88946	0.96189	12.481	2	0	Median	1311000000	667660000	643380000	374350000	180160000	194190000	256090000	144150000	111940000	353490000	168910000	184570000	327110000	174440000	152670000	54850	2560	51670	332733;332734;332735;332736;332737;332738;332739;332740;332741	448754;448755;448756;448757;448758;448759;448760;448761;448762	448756			9	
VIVIVGHVAK	1	Unmodified	1033.6648	0.6648007	3731	Q8TEA7	TBCK	TBC domain-containing protein kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									6	1	2	2	1	48.097	38.843	2;3	0.00044828	21249	160513_QHF_FH_JSI11Kac_6	89.55	65.578			0.99246	0.98352	19.141	6	1	Median	1.0976	0.94626	NaN	1	0	Median	0.63865	0.75533	10.542	2	1	Median	1.1391	1.1072	11.295	2	0	Median	0.95906	1.0387	NaN	1	0	Median	122920000	72325000	50594000	27452000	15776000	11677000	53765000	34809000	18956000	32903000	17359000	15544000	8799100	4381800	4417300	54851	3731	51671	332742;332743;332744;332745;332746;332747	448763;448764;448765;448766	448763			4	
VIVLQDVSESVFQLLVDYIYHGTVK	1	Unmodified	2863.5371	0.53714716	5055	Q9NVX7	KBTBD4	Kelch repeat and BTB domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.08	97.362	3	2.281E-94	57624	160513_QHF_FH_JSI10Kac_6	229.93	211.68			0.84615	0.99634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84615	0.99634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46479000	22166000	24313000	0	0	0	46479000	22166000	24313000	0	0	0	0	0	0	54852	5055	51672	332748	448767;448768	448768			2	
VIVLSSSHSYQR	0	Unmodified	1374.7256	0.72556306	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.32	6.56		3	8						8	5	7	3	4	31.361	26.825	2;3	1.2424E-24	14285	160513_QHF_FH_JSI12Kac_6	146.16	124.53			1.0459	1.0497	19.129	18	2	Median	1.1674	0.93572	14.777	5	0	Median	0.87798	1.0501	22.574	7	2	Median	1.0904	1.0104	5.059	3	0	Plateau	1.0526	1.1374	29.78	3	0	Median	2385100000	1089000000	1296000000	852770000	356660000	496110000	1118200000	540290000	577930000	309240000	146420000	162820000	104840000	45681000	59155000	54853	3950	51673	332749;332750;332751;332752;332753;332754;332755;332756;332757;332758;332759;332760;332761;332762;332763;332764;332765;332766;332767	448769;448770;448771;448772;448773;448774;448775;448776;448777;448778;448779;448780;448781;448782;448783;448784;448785;448786;448787;448788;448789;448790;448791;448792;448793;448794;448795;448796;448797;448798;448799;448800;448801;448802	448796			34	
VIVMLYNK	1	Unmodified	978.55722	0.55722409	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	16	0									4	1	1	1	1	63.035	53.798	2	0.0013655	29257	160513_QHF_FH_JSI11Kac_6	99.919	77.788			0.73233	0.69359	26.323	4	0	Median	0.80408	0.68612	NaN	1	0	Median	0.58267	0.68334	NaN	1	0	Median	1.212	1.1678	NaN	1	0	Median	0.66698	0.70114	NaN	1	0	Median	232040000	125730000	106310000	40085000	22744000	17341000	68341000	42637000	25704000	105120000	49595000	55522000	18496000	10754000	7741400	54854	3063	51674	332768;332769;332770;332771	448803;448804;448805	448804			3	
VIVMPTTK	1	Unmodified	887.51502	0.51502492	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	37.116	36.518	2	0.011142	33099	160511_QHF_FH_JSI12i_1	54.157	25.008			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54855	4983	51675	332772	448806	448806			1	
VIVMSATLDAGK	1	Oxidation (M)	1219.6482	0.64822394	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	0.7						3	3	1		1	2	2	2	47.683	37.853	2	0.00090684	21106	160513_QHF_FH_JSI10Kac_4	77.379	57.075			1.131	1.1415	13.073	7	1	Median	1.6657	1.3913	NaN	1	1	Median	0.92242	1.0831	0.18846	2	0	Median	1.0595	1.031	14.391	2	0	Median	1.1597	1.2487	3.1761	2	0	Median	55395000	28148000	27247000	3162500	1288600	1873900	21947000	11436000	10511000	13731000	7400700	6330000	16554000	8022200	8532100	54856	300	51676	332773;332774;332775;332776;332777;332778;332779	448807;448808;448809;448810;448811;448812;448813;448814;448815;448816;448817;448818	448808		120	12	
VIVMTTK	1	Unmodified	790.46226	0.46226107	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.269	23.478	2	0.04193	19468	160511_QHF_FH_JSI11i_2	46.426	36.676			0.68209	0.7213	4.0294	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74638	0.74215	NaN	1	0	Median	0.62333	0.70104	NaN	1	0	Median	238070000	116310000	121760000	0	0	0	0	0	0	144600000	68422000	76182000	93462000	47886000	45576000	54857	2239	51677	332780;332781	448819	448819			1	
VIVPNMEFR	0	Unmodified	1103.5798	0.57975044	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.19	2	4	4						2	2	3	4	3	63.665	61.421	2	1.5752E-05	54513	160511_QHF_FH_JSI11i_3	121.99	72.631			1.0048	1.1154	59.064	12	6	Median	1.2665	1.0301	32.799	2	1	Median	0.66238	0.77742	20.658	3	1	Median	1.5144	1.4787	71.657	4	2	Median	2.622	2.7516	55.71	3	2	Median	5606300000	2257100000	3349200000	867960000	451160000	416800000	1041600000	576570000	465070000	2070300000	673670000	1396600000	1626400000	555650000	1070800000	54858	1844	51678	332782;332783;332784;332785;332786;332787;332788;332789;332790;332791;332792;332793	448820;448821;448822;448823;448824;448825;448826;448827;448828;448829;448830;448831;448832;448833;448834;448835;448836;448837	448820			18	
VIVPNMEFR	0	Oxidation (M)	1119.5747	0.57466507	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		52.952	42.237	2	0.043183	23431	160513_QHF_FH_JSI11Kac_5	53.166	35.131			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54859	1844	51678	332794	448838	448838			1	
VIVQFQPSSVPDEWGTTQDGQTRPR	0	Unmodified	2827.3889	0.38891979	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			73.019	71.888	3	2.9659E-21	60173	160511_QHF_FH_JSI10i_3	132.45	118.86			1.0623	1.04	8.0805	4	0	Median	1.2616	1.04	6.3363	2	0	Median	0.8329	1.0039	11.969	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	293510000	143380000	150130000	139640000	62968000	76671000	153870000	80416000	73458000	0	0	0	0	0	0	54860	5755	51679	332795;332796;332797;332798	448839;448840;448841;448842;448843;448844;448845;448846;448847;448848	448840			10	
VIVQHPETVGSGPQLFQTFTVHR	0	Unmodified	2576.35	0.34995551	5652	Q9Y597	KCTD3	BTB/POZ domain-containing protein KCTD3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	76.156	69.117	3;4	8.7803E-108	37884	160513_QHF_FH_JSI10Kac_6	243.24	228.69			1.1402	1.2056	8.3237	10	1	Median	1.4107	1.1988	8.0964	3	0	Median	1.0886	1.2802	4.9491	3	0	Median	1.2269	1.1938	19.383	2	1	Median	1.1197	1.1784	4.0198	2	0	Median	3232000000	1546300000	1685800000	481010000	208380000	272630000	1749300000	867930000	881360000	647370000	313070000	334310000	354360000	156880000	197480000	54861	5652	51680	332799;332800;332801;332802;332803;332804;332805;332806;332807;332808	448849;448850;448851;448852;448853;448854;448855;448856;448857;448858;448859;448860;448861;448862	448861			14	
VIVSDVQESFIWVR	0	Unmodified	1675.8934	0.89335667	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		91.864	91.465	2;3	0.00024637	80479	160511_QHF_FH_JSI11i_2	105.13	81.41			0.91891	0.84648	12.201	2	1	Median	1.0969	0.92276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76983	0.77652	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79124000	42847000	36277000	7789900	3058700	4731300	0	0	0	71334000	39788000	31546000	0	0	0	54862	2665	51681	332809;332810	448863;448864	448864			1	
VIVVGNPANTNCLTASK	1	Unmodified	1756.9142	0.91416847	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.42	4	4	4			1	4			2	5	5	5	56.599	53.267	2;3	4.0612E-117	47178	160511_QHF_FH_JSI9i_1	279.12	259.35			1.1375	1.0541	29.88	14	3	Median	1.1401	0.94601	0.31742	2	0	Median	0.95919	1.1396	26.992	3	0	Median	0.89575	0.89209	19.952	4	1	Median	1.3425	1.4025	17.169	5	2	Median	2338300000	1121700000	1216600000	318330000	143230000	175100000	559600000	298750000	260850000	820620000	419670000	400950000	639750000	260080000	379670000	54863	1503	51682	332811;332812;332813;332814;332815;332816;332817;332818;332819;332820;332821;332822;332823;332824;332825;332826;332827	448865;448866;448867;448868;448869;448870;448871;448872;448873;448874;448875;448876;448877;448878;448879;448880;448881;448882;448883;448884;448885;448886;448887;448888;448889;448890;448891;448892;448893	448881			29	
VIVVWNNIGEK	1	Unmodified	1269.7081	0.70812208	5248	Q9UBQ6	EXTL2	Exostosin-like 2;Processed exostosin-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	73.46	64.747	2	6.8599E-07	34481	160513_QHF_FH_JSI9Kac_6	105.4	72.556			0.96935	0.94416	17.676	4	0	Median	1.0177	0.86906	NaN	1	0	Median	0.69457	0.80045	NaN	1	0	Median	1.246	1.1907	NaN	1	0	Median	0.92329	1.0258	NaN	1	0	Median	114650000	66135000	48514000	18952000	9875600	9076800	57999000	36833000	21166000	27577000	14168000	13409000	10120000	5258100	4862200	54864	5248	51683	332828;332829;332830;332831	448894;448895;448896	448895			3	
VIWLIGQWISVK	1	Unmodified	1440.8493	0.84930701	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	2	1	1	1	96.611	88.07	2	1.0842E-13	52427	160513_QHF_FH_JSI10Kac_6	132.91	89.401			0.99397	1.0688	74.118	5	2	Median	0.81612	0.68961	136.51	2	2	Median	0.60342	0.72091	NaN	1	0	Median	1.3569	1.28	NaN	1	0	Median	0.99397	1.0688	NaN	1	0	Median	778960000	395860000	383110000	254940000	134570000	120370000	155890000	96644000	59244000	217980000	89380000	128600000	150160000	75262000	74896000	54865	5323	51684	332832;332833;332834;332835;332836	448897;448898;448899;448900;448901;448902	448902			6	
VIYAMAEDGLLFK	1	Unmodified	1468.7636	0.76358805	1364	P30825;P52569	SLC7A1;SLC7A2	High affinity cationic amino acid transporter 1;Cationic amino acid transporter 2	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	88.669	88.127	2	2.9314E-05	76095	160511_QHF_FH_JSI12i_2	82.029	63.249			0.68536	0.75927	4.9193	2	2	Median	NaN	NaN	NaN	0	0	Median	0.6218	0.73332	NaN	1	1	Median	0.75542	0.78615	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54157000	34358000	19799000	0	0	0	17595000	10145000	7449300	36562000	24213000	12349000	0	0	0	54866	1364	51685	332837;332838;332839	448903;448904;448905	448903			3	
VIYHLDEEETPYLVK	1	Unmodified	1846.9353	0.93528106	182	O14641	DVL2	Segment polarity protein dishevelled homolog DVL-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		64.919	64.151	3	7.922E-05	56787	160511_QHF_FH_JSI10i_2	78.191	67.852			0.70985	0.87514	15.867	3	1	Plateau	0.99987	0.87514	NaN	1	1	Median	0.55294	0.67402	NaN	1	0	Median	0.9113	0.89784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	128480000	74827000	53650000	28242000	15118000	13124000	51834000	35165000	16669000	48401000	24544000	23857000	0	0	0	54867	182	51686	332840;332841;332842	448906;448907;448908;448909	448908			3	
VIYPGLPSHPQHELVK	1	Unmodified	1812.9887	0.98865404	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	4	1	4	49.123	48.186	3;4	5.7753E-06	40456	160511_QHF_FH_JSI12i_3	109.35	92.133			0.97041	1.0675	14.707	10	1	Median	1.3129	1.1193	NaN	1	0	Median	0.86809	1.0592	9.937	4	0	Median	1.1396	1.0924	NaN	1	0	Median	0.97041	1.0187	19.716	4	1	Median	2014100000	976020000	1038100000	95994000	45192000	50803000	416070000	212320000	203750000	303560000	164440000	139130000	1198500000	554070000	644380000	54868	1397	51687	332843;332844;332845;332846;332847;332848;332849;332850;332851;332852	448910;448911;448912;448913;448914;448915;448916;448917;448918;448919;448920;448921;448922;448923;448924;448925;448926;448927	448925			18	
VIYPGLPSHPQHELVKR	1	Acetyl (K)	2011.1003	0.10032975	1397	P32929	CTH	Cystathionine gamma-lyase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		60.063	50.349	3	0.009489	27263	160513_QHF_FH_JSI11Kac_6	50.077	27.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6615800	6615800	0	0	0	0	0	0	0	6615800	6615800	0	0	0	0	54869	1397	51688	332853	448928	448928	1357		1	
VIYSFHTLSFK	1	Unmodified	1340.7129	0.71287311	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			2						10	3	4	3	2	71.507	64.485	2;3	5.082E-10	34904	160513_QHF_FH_JSI11Kac_6	123.67	108.28			0.89476	0.94126	13.424	12	1	Median	0.90898	0.77782	15.277	3	0	Plateau	0.7659	0.91591	5.3041	4	1	Median	1.0517	0.98284	5.6445	3	0	Plateau	0.8026	0.82649	33.821	2	0	Median	1381000000	711850000	669160000	192060000	95577000	96478000	563710000	289640000	274060000	346200000	159520000	186680000	279040000	167110000	111930000	54870	2977	51689	332854;332855;332856;332857;332858;332859;332860;332861;332862;332863;332864;332865	448929;448930;448931;448932;448933;448934;448935;448936;448937	448930			8	
VIYSQPSAR	0	Unmodified	1019.54	0.53999412	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	17.813	17.084	2	0.009789	13875	160511_QHF_FH_JSI11i_2	50.703	23.741			1.0648	1.0143	15.625	4	0	Median	1.0333	0.87841	NaN	1	0	Median	0.78901	0.95369	NaN	1	0	Median	1.0973	1.0788	NaN	1	0	Median	1.104	1.2576	NaN	1	0	Median	244030000	114360000	129670000	51984000	23380000	28603000	43146000	23841000	19305000	81153000	36368000	44785000	67744000	30767000	36977000	54871	5701	51690	332866;332867;332868;332869	448938;448939;448940;448941	448940			4	
VIYVLPMLTIK	1	Unmodified	1288.7829	0.78286693	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	3	3	2	98.087	94.688	2	3.3408E-13	87294	160511_QHF_FH_JSI12i_2	149.72	87.758			0.90803	0.96008	14.58	10	0	Median	1.0932	0.91203	30.554	2	0	Median	0.74091	0.84287	9.5953	3	0	Median	1.1157	1.1544	13.955	3	0	Plateau	0.88201	0.96008	1.2078	2	0	Median	5999800000	2948700000	3051100000	1145200000	492880000	652310000	1743600000	941750000	801880000	1866700000	856340000	1010400000	1244300000	657680000	586570000	54872	5215	51691	332870;332871;332872;332873;332874;332875;332876;332877;332878;332879	448942;448943;448944;448945;448946;448947;448948;448949;448950;448951;448952;448953;448954;448955;448956;448957;448958	448944			17	
VIYVLPMLTIK	1	Oxidation (M)	1304.7778	0.77778155	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.373								1	5	2	2	1	1	86.713	78.51	2	0.00032096	42971	160513_QHF_FH_JSI9Kac_6	92.051	66.113			1.399	1.4145	22.674	6	3	Median	1.312	1.1086	31.464	2	1	Median	1.1423	1.3395	10.712	2	2	Median	1.5909	1.4912	NaN	1	0	Median	1.6236	1.7236	NaN	1	0	Median	700920000	305030000	395890000	157670000	78476000	79195000	168220000	84431000	83789000	200020000	78720000	121300000	175000000	63399000	111600000	54873	5215	51691	332880;332881;332882;332883;332884;332885	448959;448960;448961;448962;448963;448964;448965;448966	448962		2606	8	
VKANSVK	2	Acetyl (K)	786.45995	0.45995289	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		9.3915	1.7762	2	0.017683	3728	160513_QHF_FH_JSI11Kac_4	79.713	26.361			0.22738	0.21916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22738	0.21916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41109000	32124000	8984200	0	0	0	0	0	0	41109000	32124000	8984200	0	0	0	54874	3343	51692	332886	448967	448967	2853		1	
VKDDIESLHDK	2	Unmodified	1297.6514	0.65139506	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			7									4	3	16.475	16.497	2;3;4	1.1484E-07	13109	160511_QHF_FH_JSI12i_3	120.87	110.23			0.79851	0.81835	63.289	7	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4087	1.3318	74.065	4	3	Median	0.79106	0.81031	18.6	3	1	Plateau	1021400000	504930000	516500000	0	0	0	0	0	0	446140000	194090000	252050000	575290000	310840000	264450000	54875	2517	51693	332887;332888;332889;332890;332891;332892;332893	448968;448969;448970;448971;448972;448973;448974	448972			7	
VKDEPQRR	1	Unmodified	1026.557	0.55704117	833;142	P05204;O00479	HMGN2;HMGN4	Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 4	no	no	0	0	0	2	By MS/MS	By matching			3	0			4							3	1			2.0557	1.6005	3	0.0052236	731	160511_QHF_FH_JSI9i_3	69.423	69.423			1.2417	1.0053	50.627	3	1	Median	0.9094	0.73455	44.372	2	1	Median	1.2417	1.4618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	241680000	115710000	125970000	224370000	107390000	116970000	17314000	8318300	8995900	0	0	0	0	0	0	54876	833;142	51694	332894;332895;332896;332897	448975;448976;448977	448975			3	
VKDLESLFHR	1	Acetyl (K)	1284.6826	0.68263561	2207	Q03252	LMNB2	Lamin-B2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		74.791	65.435	3	0.00037651	35606	160513_QHF_FH_JSI11Kac_6	85.845	61.554			1.8194	1.7288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8194	1.7288	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29353000	12173000	17180000	0	0	0	0	0	0	29353000	12173000	17180000	0	0	0	54877	2207	51695	332898	448978	448978	2329		1	
VKDTDDVPMILVGNK	2	Unmodified	1642.86	0.86000763	1946	P61224;A6NIZ1	RAP1B	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein	yes	no	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	60.338	60.204	3	0.0050251	51745	160511_QHF_FH_JSI12i_3	45.084	41.304			1.4233	1.3604	8.2775	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5986	1.4424	NaN	1	0	Median	1.2672	1.2831	NaN	1	0	Median	148030000	58909000	89125000	0	0	0	0	0	0	40199000	9600800	30598000	107840000	49308000	58527000	54878	1946	51696	332899;332900	448979	448979			1	
VKDTEDVPMILVGNK	2	Unmodified	1656.8757	0.87565769	2023	P62834	RAP1A	Ras-related protein Rap-1A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	60.607	60.333	3	0.00095924	52031	160511_QHF_FH_JSI12i_3	56.599	52.419			1.7948	1.8361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7948	1.8361	NaN	1	0	Median	67502000	29429000	38072000	0	0	0	0	0	0	0	0	0	67502000	29429000	38072000	54879	2023	51697	332901	448980	448980			1	
VKEDENVPFLLVGNK	2	Unmodified	1699.9145	0.91448604	993	P11233	RALA	Ras-related protein Ral-A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	68.147	67.624	2;3	1.1876E-05	58518	160511_QHF_FH_JSI12i_3	149.26	124.47			0.96657	1.053	9.3359	8	2	Median	1.2342	1.0694	NaN	1	0	Median	0.86864	1.0752	NaN	1	0	Median	1.0447	1.0368	12.734	3	2	Median	0.86789	0.99184	9.8919	3	0	Plateau	959470000	467320000	492150000	56336000	21772000	34563000	101610000	58099000	43512000	409140000	197260000	211880000	392380000	190190000	202190000	54880	993	51698	332902;332903;332904;332905;332906;332907;332908;332909	448981;448982;448983;448984;448985;448986;448987;448988;448989;448990;448991	448989			11	
VKEDPDGEHAR	1	Unmodified	1251.5844	0.58437813	1765	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							3	2	4	2	5.0806	4.9238	2;3	9.9573E-23	2698	160511_QHF_FH_JSI11i_3	180.07	153.68			0.73311	0.72718	9.8523	9	1	Median	0.9972	0.84871	NaN	1	1	Median	0.5757	0.7192	3.7183	2	0	Median	0.75323	0.72709	9.1779	4	0	Median	0.72293	0.73616	17.62	2	0	Median	2279300000	1324800000	954480000	83712000	41247000	42465000	387480000	249050000	138430000	1419100000	798450000	620610000	389080000	236100000	152980000	54881	1765	51699	332910;332911;332912;332913;332914;332915;332916;332917;332918;332919;332920	448992;448993;448994;448995;448996;448997;448998;448999;449000;449001;449002;449003;449004;449005;449006;449007;449008;449009	448993			18	
VKEEIIEAFVQELR	1	Unmodified	1701.9301	0.93013611	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		96.708	96.708	3	0.0036013	86140	160511_QHF_FH_JSI11i_3	57.288	51.393			0.16751	0.15959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16751	0.15959	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	36741000	29456000	7285400	0	0	0	0	0	0	36741000	29456000	7285400	0	0	0	54882	1710	51700	332921	449010	449010			1	
VKEPSQDTVATEPSEVEGSAANK	2	Unmodified	2372.1343	0.13432781	4229	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	34.696	34.11	3	0.007827	30855	160511_QHF_FH_JSI12i_1	35.918	27.317			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54883	4229	51701	332922	449011	449011			1	
VKEPSVQEATSTSDILK	2	Unmodified	1830.9575	0.95747307	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	49.478	48.917	3	5.112E-08	41731	160511_QHF_FH_JSI12i_3	107.51	95.487			0.92305	0.84033	9.4547	4	0	Median	0.92231	0.78332	NaN	1	0	Median	0.64268	0.77664	NaN	1	0	Median	0.97045	0.90149	NaN	1	0	Median	0.92379	0.93279	NaN	1	0	Median	394950000	194150000	200810000	54975000	21674000	33301000	75423000	42200000	33224000	100150000	47349000	52797000	164410000	82923000	81483000	54884	3463	51702	332923;332924;332925;332926	449012;449013;449014;449015;449016;449017;449018	449017			7	
VKFAVLQTYGDTTHTLVEK	2	Acetyl (K)	2191.1525	0.15248448	1395	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.457	71.143	3	4.5367E-06	39105	160513_QHF_FH_JSI11Kac_6	146.89	120.75			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48765000	48765000	0	0	0	0	0	0	0	48765000	48765000	0	0	0	0	54885	1395	51703	332927	449019	449019	1355		1	
VKGDADVSVPK	2	Unmodified	1113.603	0.60298831	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.6	1	6	3							2	2	4	2	18.385	17.993	2;3	0.0045672	14404	160511_QHF_FH_JSI12i_3	46.88	27.221			0.939	0.92874	14.329	10	0	Median	1.095	0.95127	6.1943	2	0	Median	0.78802	0.96283	9.8334	2	0	Median	0.87464	0.88557	18.666	4	0	Median	1.0787	1.0861	19.335	2	0	Median	890340000	425840000	464500000	129230000	56825000	72406000	103660000	54449000	49214000	328680000	150160000	178520000	328760000	164400000	164360000	54886	2286	51704	332928;332929;332930;332931;332932;332933;332934;332935;332936;332937	449020;449021;449022;449023;449024;449025	449025			6	
VKGDFDVSVPK	2	Unmodified	1189.6343	0.63428844	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.57	0.495		3	4							1		2	4	39.729	39.189	2;3	0.00012971	33258	160511_QHF_FH_JSI12i_3	65.563	47.295			1.0565	1.0594	11.191	6	0	Median	1.3153	1.1458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.0482	4.5624	2	0	Median	1.0137	1.0367	15.288	3	0	Median	416380000	193000000	223380000	42283000	16916000	25367000	0	0	0	125450000	50463000	74983000	248660000	125620000	123030000	54887	2286	51705	332938;332939;332940;332941;332942;332943;332944	449026;449027;449028;449029;449030	449027			5	
VKGDLDIAGPNLEGDFK	2	Unmodified	1786.9101	0.91012895	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.834	65.54	2	2.7146E-06	56647	160511_QHF_FH_JSI12i_3	95.651	72.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54888	2286	51706	332945	449031	449031			1	
VKGDMDISLPK	2	Unmodified	1201.6377	0.63765925	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By matching	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	44.446	43.622	3	0.0018126	37258	160511_QHF_FH_JSI12i_3	52.071	32.229			0.92999	1.0077	4.8241	5	0	Median	1.1295	1.0077	NaN	1	0	Median	0.83526	1.0341	NaN	1	0	Median	0.92999	0.92394	NaN	1	0	Median	0.9282	0.98676	4.8384	2	0	Median	586390000	360530000	225860000	46523000	20252000	26271000	59644000	34229000	25415000	43443000	21181000	22262000	436780000	284870000	151910000	54889	2286	51707	332946;332947;332948;332949;332950	449032	449032			1	
VKGDMDVSLPK	2	Unmodified	1187.622	0.62200919	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.6	0.49		2	3							1		2	2	36.759	36.405	2;3	0.0001093	31795	160511_QHF_FH_JSI11i_3	114.4	59.337			1.0612	1.013	19.206	5	5	Median	1.0612	0.91366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0887	1.0766	23.987	2	2	Median	1.1601	1.1797	21.544	2	2	Median	807420000	401050000	406370000	79764000	37741000	42023000	0	0	0	198170000	104390000	93783000	529480000	258920000	270560000	54890	2286	51708	332951;332952;332953;332954;332955	449033;449034;449035;449036;449037	449033			5	
VKGDMDVSVPK	2	Unmodified	1173.6064	0.60635913	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	2	1	4	28.888	28.152	2;3	0.00089033	24608	160511_QHF_FH_JSI10i_2	51.211	34.957			0.69501	0.71336	82.354	9	1	Median	0.63374	0.53686	11.791	2	0	Median	0.71391	0.87281	3.5637	2	0	Median	0.74888	0.71336	NaN	1	0	Median	0.63468	0.66339	125.02	4	1	Median	2586300000	1180800000	1405600000	322050000	154990000	167060000	352740000	217650000	135090000	292440000	170330000	122110000	1619100000	637800000	981300000	54891	2286	51709	332956;332957;332958;332959;332960;332961;332962;332963;332964	449038;449039;449040;449041;449042;449043;449044	449042			6	
VKGDVDISLPK	2	Unmodified	1169.6656	0.66558856	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.49	1	2	3					1		1	2	1	3	44.029	42.118	2;3	0.00069554	35963	160511_QHF_FH_JSI12i_3	62.088	13.52			1.0708	1.0436	22.252	7	0	Median	1.1142	0.92906	NaN	1	0	Median	0.8489	1.0025	6.3224	2	0	Median	1.0708	0.98191	NaN	1	0	Median	1.2039	1.234	26.577	3	0	Median	805040000	399160000	405880000	63094000	29728000	33367000	100940000	61128000	39809000	152130000	74807000	77327000	488880000	233490000	255380000	54892	2286	51710	332965;332966;332967;332968;332969;332970;332971	449045;449046;449047;449048;449049;449050;449051;449052;449053;449054	449052			10	
VKGDVDVSLPK	2	Unmodified	1155.6499	0.6499385	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.44	3	7	3				1	3		3	2	6	6	38.025	35.159	2;3	2.0561E-06	30349	160511_QHF_FH_JSI11i_3	96.64	55.1			1.1225	1.0592	37.698	17	1	Median	1.2226	1.0586	10.649	3	0	Plateau	0.88008	1.0549	8.0473	2	0	Median	0.98711	0.94501	21.932	6	0	Median	1.6209	1.7871	26.056	6	1	Median	3172600000	1324800000	1847800000	479280000	219510000	259770000	275480000	144210000	131260000	1474200000	576180000	898060000	943620000	384910000	558710000	54893	2286	51711	332972;332973;332974;332975;332976;332977;332978;332979;332980;332981;332982;332983;332984;332985;332986;332987;332988	449055;449056;449057;449058;449059;449060;449061;449062;449063;449064;449065;449066;449067;449068;449069;449070;449071;449072;449073;449074;449075;449076;449077;449078;449079	449055			25	
VKGDVDVSVPK	2	Unmodified	1141.6343	0.63428844	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	27.404	27.084	2	3.8997E-06	22629	160511_QHF_FH_JSI12i_3	113.69	94.592			0.86459	0.87256	21.56	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0091	1.2318	NaN	1	0	Median	1.361	1.2837	NaN	1	1	Median	0.86459	0.86709	NaN	1	0	Median	147240000	66890000	80352000	0	0	0	27115000	14991000	12124000	29227000	10100000	19127000	90899000	41799000	49101000	54894	2286	51712	332989;332990;332991	449080;449081;449082;449083	449082			4	
VKGDVDVTLPK	2	Unmodified	1169.6656	0.66558856	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	36.608	35.952	3	0.00094029	31539	160511_QHF_FH_JSI10i_2	57.802	5.9606			0.60722	0.62433	28.35	6	0	Median	0.60182	0.51915	NaN	1	0	Median	0.48574	0.58942	NaN	1	0	Median	0.64342	0.62585	42.288	2	0	Median	0.76051	0.8007	27.05	2	0	Median	386830000	220150000	166670000	37210000	22469000	14741000	57735000	38676000	19058000	111880000	63241000	48642000	180000000	95768000	84231000	54895	2286	51713	332992;332993;332994;332995;332996;332997	449084;449085;449086;449087;449088;449089;449090;449091	449089			8	
VKGEEIYSMDEGIR	1	Unmodified	1624.7767	0.77667193	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	3	2	44.569	44.075	2;3	6.4471E-05	37547	160511_QHF_FH_JSI12i_3	79.81	72.771			0.89125	0.88076	29.756	8	3	Median	1.752	1.5166	NaN	1	1	Median	0.5668	0.69369	15.034	2	0	Median	0.82249	0.7867	28.447	3	2	Median	1.0092	1.0236	5.288	2	0	Median	556620000	264600000	292020000	14095000	5044200	9050800	123850000	72425000	51426000	126980000	63518000	63460000	291700000	123620000	168080000	54896	4193	51714	332998;332999;333000;333001;333002;333003;333004;333005	449092;449093;449094;449095;449096;449097;449098;449099;449100;449101;449102;449103	449102			12	
VKGEYDMTVPK	2	Unmodified	1265.6326	0.63257388	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	2	3	29.244	28.983	2;3	0.00067815	24203	160511_QHF_FH_JSI12i_3	73.848	65.744			1.2658	1.3045	33.519	4	3	Median	NaN	NaN	NaN	0	0	Median	0.86803	1.0778	NaN	1	1	Median	1.0374	0.95957	NaN	1	0	Median	1.6602	1.7667	15.904	2	2	Median	554930000	256960000	297970000	0	0	0	98900000	60783000	38116000	87497000	33805000	53692000	368530000	162370000	206160000	54897	2286	51715	333006;333007;333008;333009;333010;333011;333012	449104;449105;449106;449107;449108;449109;449110	449108			7	
VKGEYDVTVPK	2	Unmodified	1233.6605	0.66050319	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.606	1	7	5							1	3	5	4	29.854	29.338	2;3	1.2376E-05	24846	160511_QHF_FH_JSI11i_2	85.845	73.631			1.0285	1.7063	22.788	13	4	Linear	1.0018	0.87096	NaN	1	1	Median	1.0285	1.2543	25.088	3	1	Plateau	1.0889	1.1008	17.077	5	2	Median	1.3197	1.4096	18.653	4	0	Median	1487600000	694890000	792690000	31957000	15232000	16724000	189880000	102270000	87613000	551950000	268160000	283790000	713790000	309230000	404560000	54898	2286	51716	333013;333014;333015;333016;333017;333018;333019;333020;333021;333022;333023;333024;333025	449111;449112;449113;449114;449115;449116;449117;449118;449119;449120;449121;449122;449123;449124;449125;449126	449120			16	
VKHFEAR	1	Acetyl (K)	927.49265	0.49265	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		16.814	7.5873	3	0.025397	6286	160513_QHF_FH_JSI11Kac_6	41.448	26.673			0.35318	0.33506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35318	0.33506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10456000	8071500	2384200	0	0	0	0	0	0	10456000	8071500	2384200	0	0	0	54899	2664	51717	333026	449127	449127	2619		1	
VKKEDEVQAIATLIEK	3	Unmodified	1813.0197	0.019679395	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	2				By MS/MS	3	0			1										1	70.784	70.486	3	0.00027205	61067	160511_QHF_FH_JSI12i_3	82.01	67.051			0.4531	0.4696	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4531	0.4696	NaN	1	1	Median	24541000	15158000	9383100	0	0	0	0	0	0	0	0	0	24541000	15158000	9383100	54900	4176	51718	333027	449128	449128			1	
VKLDSPAGTALSPSGHTK	2	Unmodified	1764.937	0.9370124	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			9							3	3	2	1	34.701	33.793	3;4	2.7667E-05	27608	160511_QHF_FH_JSI9i_3	74.618	66.276			0.93362	0.9612	7.6287	8	2	Median	1.1908	0.98809	2.2095	2	0	Median	0.81063	0.94976	9.5687	3	2	Median	0.93619	0.8695	3.4706	2	0	Median	0.96379	0.99651	NaN	1	0	Median	610430000	273970000	336460000	144210000	64003000	80205000	259840000	132040000	127800000	156630000	62200000	94433000	49752000	15731000	34022000	54901	1394	51719	333028;333029;333030;333031;333032;333033;333034;333035;333036	449129;449130;449131;449132;449133;449134	449133			6	
VKLDSPAGTALSPSGHTK	2	Acetyl (K)	1806.9476	0.94757708	1394	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	yes	yes	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		53.817	43.182	3	0.011108	23912	160513_QHF_FH_JSI11Kac_5	41.348	41.348			0.55859	0.59663	87.622	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95268	1.1086	NaN	1	0	Median	0.32752	0.32109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13666000	9589600	4076200	0	0	0	3003900	1358900	1644900	10662000	8230700	2431200	0	0	0	54902	1394	51719	333037;333038	449135	449135	1349		1	
VKLEAEIATYR	1	Unmodified	1291.7136	0.71360139	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.61		4	7						8	4	5	5	5	49.205	44.792	2;3	3.8184E-10	24587	160513_QHF_FH_JSI10Kac_6	111.79	95.161			0.96611	0.99364	13.952	19	0	Median	0.97846	0.82385	6.0461	4	0	Median	0.80594	0.98023	3.7509	5	0	Median	1.1859	1.1591	11.138	5	0	Median	0.98262	1.0192	15.559	5	0	Median	2333500000	1134500000	1199000000	225210000	116720000	108490000	535650000	291460000	244190000	690230000	294120000	396120000	882430000	432210000	450220000	54903	842	51720	333039;333040;333041;333042;333043;333044;333045;333046;333047;333048;333049;333050;333051;333052;333053;333054;333055;333056;333057	449136;449137;449138;449139;449140;449141;449142;449143;449144;449145;449146;449147;449148;449149;449150;449151;449152;449153;449154;449155;449156;449157;449158;449159;449160	449159			24	
VKLESPTVSTLTPSSPGK	2	Unmodified	1826.9989	0.99894395	4000	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	51.952	51.717	3	1.6799E-05	44332	160511_QHF_FH_JSI12i_3	81.854	71.219			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54904	4000	51721	333058	449161	449161			1	
VKLLLQVQHASK	2	Acetyl (K)	1404.8453	0.84528426	826;1014;1013	P12236;P05141;P12235	SLC25A6;SLC25A5;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1	no	no	1	0	0	1		By matching		By MS/MS	16	0									2		1		1	61.265	52.119	3	4.6318E-05	27349	160513_QHF_FH_JSI12Kac_6	89.46	85.308			0.8813	0.99193	5.8383	2	0	Median	NaN	NaN	NaN	0	0	Median	0.82714	0.95182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.939	1.0337	NaN	1	0	Median	27071000	14153000	12919000	0	0	0	13468000	6720800	6747600	0	0	0	13603000	7431800	6171200	54905	1014;826;1013	51722	333059;333060	449162;449163	449163	479;816		2	
VKLPSGSK	2	Unmodified	814.49125	0.49125301	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	12.08	11.73	3	0.004847	9288	160511_QHF_FH_JSI10i_3	48.794	29.7			1.1813	1.1348	20.037	4	0	Median	1.5531	1.2815	NaN	1	0	Median	0.72077	0.81962	NaN	1	0	Median	1.1519	1.0567	NaN	1	0	Median	1.2115	1.2188	NaN	1	0	Median	855800000	420970000	434830000	325820000	142890000	182930000	166980000	104890000	62086000	150940000	66678000	84265000	212050000	106510000	105540000	54906	2039	51723	333061;333062;333063;333064	449164;449165;449166;449167	449164			4	
VKLPSGSK	2	Acetyl (K)	856.50182	0.5018177	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		29.472	21.039	2	0.028139	13262	160513_QHF_FH_JSI11Kac_4	57.931	20.372			0.40034	0.39554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40034	0.39554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25340000	20250000	5089600	0	0	0	0	0	0	25340000	20250000	5089600	0	0	0	54907	2039	51723	333065	449168	449168			1	
VKNIHGYMK	2	Acetyl (K)	1130.5906	0.59064948	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									2		1	1		32.595	23.777	3	0.0035029	13468	160513_QHF_FH_JSI11Kac_6	54.066	42.352			0.75792	0.80164	98.195	2	0	Median	NaN	NaN	NaN	0	0	Median	1.372	1.6052	NaN	1	0	Median	0.41869	0.40034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13837000	8437400	5399400	0	0	0	4347000	1715900	2631000	9489800	6721500	2768300	0	0	0	54908	3896	51724	333066;333067	449169	449169	2991		1	
VKNQYEK	2	Unmodified	907.47633	0.47633123	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		11.024	10.706	3	0.034112	8326	160511_QHF_FH_JSI11i_3	37.021	3.2241			1.0187	1.062	24.906	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1004	1.2666	NaN	1	0	Median	0.94301	0.89055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2882900000	1451800000	1431100000	0	0	0	562440000	275650000	286790000	2320500000	1176200000	1144300000	0	0	0	54909	454	51725	333068;333069	449170;449171	449170			2	
VKPAPDETSFSEALLK	2	Unmodified	1730.9091	0.90906631	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.62		4	6					4		3	3	4	4	64.857	61.301	2;3	2.3738E-14	52844	160511_QHF_FH_JSI12i_3	177.84	160.03			1.012	0.98949	17.278	14	1	Median	1.5921	0.95745	22.515	3	1	Plateau	1.147	1.3594	11.068	3	0	Plateau	1.0046	0.94717	2.7019	4	0	Linear	0.84134	0.80279	16.426	4	0	Linear	4630400000	2180900000	2449500000	152100000	63226000	88874000	233360000	111460000	121900000	1584400000	813960000	770480000	2660500000	1192300000	1468200000	54910	2324	51726	333070;333071;333072;333073;333074;333075;333076;333077;333078;333079;333080;333081;333082;333083	449172;449173;449174;449175;449176;449177;449178;449179;449180;449181;449182;449183;449184;449185;449186;449187;449188;449189;449190;449191;449192;449193;449194	449191			23	
VKPASPVAQPK	2	Unmodified	1120.6604	0.66044361	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			3								1		2	14.882	14.453	2;3	0.00096314	11225	160511_QHF_FH_JSI12i_3	57.401	53.065			0.79146	0.85359	31.32	2	1	Median	NaN	NaN	NaN	0	0	Median	0.58569	0.68402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0695	1.0652	NaN	1	0	Median	86159000	43546000	42613000	0	0	0	25200000	14429000	10772000	0	0	0	60959000	29118000	31841000	54911	4059	51727	333084;333085;333086	449195;449196;449197	449196			3	
VKPDVVQDK	2	Unmodified	1026.571	0.5709599	5577	Q9Y3B9	RRP15	RRP15-like protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	13.06	13.101	2;3	0.0031572	10542	160511_QHF_FH_JSI11i_3	60.102	43.265			0.53284	0.52281	64.862	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8906	0.82705	NaN	1	1	Median	0.31879	0.33049	NaN	1	1	Median	318600000	201480000	117120000	0	0	0	0	0	0	134840000	65282000	69555000	183760000	136200000	47565000	54912	5577	51728	333087;333088	449198;449199	449198			2	
VKPEEMMDERPK	2	Unmodified	1487.7112	0.7112349	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	2			By MS/MS		3	0			1									1		26.366	26.366	3	0.010165	22466	160511_QHF_FH_JSI11i_3	42.209	29.583			0.58844	0.55423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58844	0.55423	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	59562000	29426000	30136000	0	0	0	0	0	0	59562000	29426000	30136000	0	0	0	54913	5380	51729	333089	449200	449200			1	
VKPFMTGAAEQIK	2	Oxidation (M)	1434.7541	0.754086	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	4.09			8						1	2	2	3	2	32.671	31.947	2;3	6.9454E-07	26677	160511_QHF_FH_JSI10i_3	131.53	118.77			0.842	0.86271	7.643	8	0	Median	1.1191	0.90485	2.1392	2	0	Median	0.8341	0.95304	0.23862	2	0	Median	0.8745	0.83112	0.67024	2	0	Median	0.78136	0.79811	4.0262	2	0	Median	3821100000	1782100000	2039000000	992180000	441860000	550320000	774420000	427590000	346830000	704220000	297560000	406660000	1350300000	615140000	735170000	54914	1036	51730	333090;333091;333092;333093;333094;333095;333096;333097;333098	449201;449202;449203;449204;449205;449206;449207;449208;449209;449210;449211;449212;449213;449214;449215;449216;449217;449218;449219;449220;449221	449204		652	21	
VKPFMTGAAEQIK	2	Unmodified	1418.7592	0.75917137	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.75		3	9						4	4	4	5	3	44.637	41.571	2;3	1.2993E-11	34960	160511_QHF_FH_JSI10i_3	154.47	116.45			0.91208	0.89225	44.454	15	3	Median	1.0659	0.87263	20.36	4	0	Median	0.74501	0.82607	8.3639	4	0	Median	0.66089	0.63716	88.578	4	3	Median	0.93259	0.92897	9.3264	3	0	Plateau	24118000000	11351000000	12767000000	5817300000	2164800000	3652500000	6794800000	2889900000	3904900000	4414500000	2428500000	1985900000	7091600000	3868000000	3223600000	54915	1036	51730	333099;333100;333101;333102;333103;333104;333105;333106;333107;333108;333109;333110;333111;333112;333113;333114	449222;449223;449224;449225;449226;449227;449228;449229;449230;449231;449232;449233;449234;449235;449236;449237;449238;449239;449240;449241;449242;449243;449244;449245;449246;449247;449248;449249;449250;449251;449252;449253;449254;449255;449256;449257;449258;449259;449260;449261;449262;449263;449264;449265;449266;449267;449268;449269	449231			48	
VKPFMTGAAEQIK	2	Acetyl (K)	1460.7697	0.76973606	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							6	4			3	4	3	71.069	60.34	2;3	0.0013772	32727	160513_QHF_FH_JSI12Kac_4	68.83	49.619			0.86897	0.98104	44.199	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0904	1.274	18.423	3	0	Median	0.52959	0.51803	15.749	2	0	Median	0.8356	0.9231	8.6094	2	0	Median	79530000	49833000	29696000	0	0	0	27019000	14538000	12481000	31207000	21666000	9541000	21304000	13629000	7674200	54916	1036	51730	333115;333116;333117;333118;333119;333120;333121;333122;333123;333124	449270;449271;449272;449273;449274;449275;449276;449277;449278	449276	865;866		9	
VKPFMTGAAEQIKHILANFK	3	Acetyl (K)	2284.2402	0.24019405	1036	P13693;Q56UQ5	TPT1	Translationally-controlled tumor protein;TPT1-like protein	yes	no	1	0	0	2			By MS/MS		16	0									1			1		95.303	85.911	4	6.0846E-08	48582	160513_QHF_FH_JSI11Kac_6	152.04	141.54			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32640000	32640000	0	0	0	0	0	0	0	32640000	32640000	0	0	0	0	54917	1036	51731	333125	449279	449279	865;866		1	
VKPFVVR	1	Unmodified	843.53306	0.53305825	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		25.531	24.649	3	0.025375	20844	160511_QHF_FH_JSI11i_3	34.824	26.052			1.0056	0.84961	15.006	3	2	Plateau	1.0109	0.80844	NaN	1	0	Median	0.90001	1.0709	NaN	1	1	Median	0.89113	0.84961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	268340000	153910000	114430000	93372000	52609000	40763000	93004000	50079000	42925000	81968000	51225000	30744000	0	0	0	54918	5633	51732	333126;333127;333128;333129;333130	449280;449281;449282;449283;449284;449285	449281			6	
VKPIIDLVHK	2	Unmodified	1160.7281	0.72812924	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	2	1	1	45.47	44.617	3;4	8.8199E-05	36826	160511_QHF_FH_JSI9i_3	91.313	88.09			0.55387	0.55185	11.611	4	4	Median	0.69984	0.57689	NaN	1	1	Median	0.43578	0.52791	NaN	1	1	Median	0.49499	0.47272	NaN	1	1	Median	0.61976	0.61843	NaN	1	1	Median	390920000	213660000	177260000	98915000	49152000	49763000	85663000	47372000	38291000	81441000	47390000	34050000	124900000	69751000	55152000	54919	2925	51733	333131;333132;333133;333134;333135;333136	449286;449287;449288;449289;449290;449291;449292;449293	449292			8	
VKPIVTPR	1	Unmodified	908.58074	0.58073672	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		17.86	17.115	3	0.0047199	14036	160511_QHF_FH_JSI11i_3	60.828	51.965			0.8183	0.67282	32.216	3	1	Plateau	0.8183	0.67282	NaN	1	0	Median	0.6752	0.78793	NaN	1	0	Median	1.3516	1.2507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	790830000	457760000	333070000	333790000	192320000	141470000	236180000	145800000	90385000	220860000	119650000	101210000	0	0	0	54920	5536	51734	333137;333138;333139	449294;449295;449296	449294			3	
VKPLHPNATST	1	Acetyl (K)	1205.6404	0.64043645	3975	Q96B01	RAD51AP1	RAD51-associated protein 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	0.756						2	3	2		1	2	1	3	30.729	20.379	2	1.1333E-19	14153	160513_QHF_FH_JSI10Kac_4	166.34	127.56			0.82466	0.92908	10.579	7	0	Median	1.2687	0.97845	NaN	1	0	Median	0.84783	0.98418	8.1479	2	0	Median	0.82466	0.80327	NaN	1	0	Median	0.81947	0.90796	12.115	3	0	Median	120420000	60254000	60168000	22935000	9757200	13177000	25216000	13916000	11299000	35797000	17851000	17946000	36475000	18729000	17746000	54921	3975	51735	333140;333141;333142;333143;333144;333145;333146	449297;449298;449299;449300;449301	449297	3021		5	
VKPLHPNATST	1	Unmodified	1163.6299	0.62987176	3975	Q96B01	RAD51AP1	RAD51-associated protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			11.404	10.731	2	0.010338	8191	160511_QHF_FH_JSI9i_3	63.076	53.488			1.1202	1.0907	21.159	2	0	Median	1.5408	1.2667	NaN	1	0	Median	0.81438	0.93911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68764000	37106000	31658000	40310000	21141000	19168000	28455000	15965000	12490000	0	0	0	0	0	0	54922	3975	51735	333147;333148	449302	449302			1	
VKPLLQVSR	1	Unmodified	1038.655	0.6549643	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	9.5	6.5			3						3	2	2	1	1	35.456	30.494	3	0.00050658	25114	160511_QHF_FH_JSI10i_3	70.1	7.0245			0.83424	0.83968	25.911	6	1	Median	1.3503	1.1466	9.709	2	1	Median	0.57982	0.67942	20.232	2	0	Median	0.85648	0.78777	NaN	1	0	Median	0.81257	0.895	NaN	1	0	Median	231790000	118850000	112940000	54331000	23382000	30949000	121990000	64568000	57423000	51414000	28436000	22978000	4053800	2460100	1593700	54923	1436	51736	333149;333150;333151;333152;333153;333154	449303;449304;449305;449306	449304			3	
VKPLQDQNELFGK	2	Unmodified	1514.8093	0.80929269	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	0.445		3	8							3	4	2	2	45.952	45.132	2;3	2.7098E-14	38636	160511_QHF_FH_JSI12i_3	155.48	141.25			1.1363	1.1231	13.481	10	2	Median	1.4987	1.268	24.513	2	0	Median	0.8746	1.0371	12.779	4	2	Median	1.3066	1.2351	6.0952	2	0	Median	1.1185	1.1102	10.235	2	0	Median	3472300000	1883400000	1588900000	65151000	28239000	36912000	521380000	266260000	255120000	1031700000	477270000	554430000	1854100000	1111600000	742440000	54924	2319	51737	333155;333156;333157;333158;333159;333160;333161;333162;333163;333164;333165	449307;449308;449309;449310;449311;449312;449313;449314;449315;449316;449317;449318;449319;449320;449321;449322;449323;449324	449321			18	
VKPNFPFLLFMR	1	Unmodified	1507.8374	0.83736212	5368	Q9UKJ3	GPATCH8	G patch domain-containing protein 8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.649	83.32	3	1.8564E-08	46547	160513_QHF_FH_JSI11Kac_6	111.86	104.82			0.87661	0.88611	3.9742	4	0	Median	0.99933	0.84328	NaN	1	0	Median	0.77827	0.91798	NaN	1	0	Median	0.94484	0.907	NaN	1	0	Median	0.81332	0.86569	NaN	1	0	Median	658490000	359840000	298660000	126930000	63818000	63114000	357510000	200470000	157040000	108480000	56078000	52407000	65560000	39465000	26094000	54925	5368	51738	333166;333167;333168;333169	449325;449326;449327;449328;449329;449330;449331;449332	449325			8	
VKPNIFSYMGTK	2	Oxidation (M)	1399.717	0.71697221	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		43.574	42.526	3	0.012823	34803	160511_QHF_FH_JSI9i_3	44.511	39.527			0.84102	0.68012	16.044	3	0	Plateau	0.84102	0.68012	NaN	1	0	Median	0.74892	0.85177	NaN	1	0	Median	1.019	0.92786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	124090000	72040000	52045000	57324000	32029000	25295000	34211000	19373000	14838000	32550000	20638000	11912000	0	0	0	54926	4202	51739	333170;333171;333172	449333;449334	449334		2413	2	
VKPNIFSYMGTK	2	Unmodified	1383.7221	0.72205759	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							2	2		1	60.232	58.96	2;3	4.3485E-07	50552	160511_QHF_FH_JSI12i_3	107.37	101.14			1.0139	0.96348	12.243	5	1	Median	1.2013	0.97656	1.9066	2	0	Median	0.69463	0.82852	13.05	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0139	1.034	NaN	1	0	Median	903030000	478160000	424870000	312400000	140380000	172020000	345520000	202340000	143190000	0	0	0	245110000	135440000	109660000	54927	4202	51739	333173;333174;333175;333176;333177	449335;449336;449337;449338;449339;449340;449341;449342;449343	449342			9	
VKPNLQTFNTILK	2	Unmodified	1514.8821	0.8820637	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			66.893	65.404	3	1.0929E-05	54779	160511_QHF_FH_JSI10i_3	82.069	73.272			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54928	4064	51740	333178	449344	449344			1	
VKPPFIPTIR	1	Unmodified	1166.7176	0.71756456	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		60.537	59.521	3	0.00088404	49990	160511_QHF_FH_JSI10i_3	61.958	55.355			0.82156	0.84713	9.588	3	0	Median	1.0165	0.84713	NaN	1	0	Median	0.76895	0.89583	NaN	1	0	Median	0.82156	0.74318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	91840000	45356000	46484000	13457000	4340000	9117200	38040000	19414000	18626000	40343000	21602000	18741000	0	0	0	54929	2732	51741	333179;333180;333181	449345;449346;449347;449348	449348			4	
VKPQFQEILR	1	Unmodified	1256.7241	0.7241065	5201	Q9P260	KIAA1468	LisH domain and HEAT repeat-containing protein KIAA1468	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			48.909	47.32	3	0.00054576	38723	160511_QHF_FH_JSI9i_3	66.758	45.386			0.50946	0.49778	33.888	2	1	Median	0.7666	0.63256	NaN	1	0	Median	0.33857	0.39171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69186000	43720000	25466000	40815000	25930000	14885000	28371000	17790000	10581000	0	0	0	0	0	0	54930	5201	51742	333182;333183	449349;449350	449350			2	
VKPQPPLSDAYLSGMPAK	2	Unmodified	1897.9972	0.99716981	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	2	2	2	61.151	60.379	2;3	2.1912E-07	52094	160511_QHF_FH_JSI12i_3	119.23	102.93			0.97295	0.95167	4.5605	7	0	Median	1.1807	0.99217	5.894	2	0	Median	0.77958	0.93952	2.342	2	0	Median	0.97295	0.94112	NaN	1	0	Median	0.94748	0.93279	6.1084	2	0	Median	1840100000	956670000	883470000	187990000	81957000	106030000	302910000	162790000	140120000	477010000	244130000	232880000	872240000	467790000	404440000	54931	1585	51743	333184;333185;333186;333187;333188;333189;333190;333191	449351;449352;449353;449354;449355;449356;449357;449358;449359;449360;449361;449362;449363;449364;449365	449363			13	
VKPQPPLSDAYLSGMPAK	2	Oxidation (M)	1913.9921	0.99208444	1585	P46379	BAG6	Large proline-rich protein BAG6	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									1	2	50.533	50.376	3	0.00051967	43036	160511_QHF_FH_JSI12i_3	72.184	61.845			0.83047	0.77615	7.6587	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83047	0.77615	NaN	1	1	Median	0.7893	0.80147	10.509	2	2	Median	282520000	155410000	127110000	0	0	0	0	0	0	53754000	22991000	30763000	228770000	132420000	96347000	54932	1585	51743	333192;333193;333194	449366;449367;449368	449367		1247	3	
VKPQVSESKL	2	Unmodified	1113.6394	0.63937381	194	O14734	ACOT8	Acyl-coenzyme A thioesterase 8	yes	yes	0	0	0	2	By matching	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	21.13	20.515	3	0.00059914	16520	160511_QHF_FH_JSI12i_3	61.815	33.638			0.97733	1.0345	24.783	4	0	Median	0.99372	0.79007	NaN	1	0	Median	0.9612	1.1096	NaN	1	0	Median	1.5738	1.4247	NaN	1	0	Median	0.96021	0.96456	NaN	1	0	Median	278870000	141470000	137400000	51639000	27208000	24432000	68615000	35638000	32976000	52125000	19417000	32708000	106490000	59206000	47284000	54933	194	51744	333195;333196;333197;333198	449369;449370	449370			2	
VKPTFSLPPQLPPPVNTSK	2	Unmodified	2046.1514	0.15136227	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			14							3	6	3	2	75.996	75.138	3	0.00081119	63175	160511_QHF_FH_JSI10i_3	54.964	44.907			0.94861	0.84848	27.864	7	5	Median	1.2784	1.0495	18.684	3	1	Median	0.94861	1.12	NaN	1	1	Median	0.79538	0.74468	18.455	2	2	Median	0.54045	0.57873	NaN	1	1	Median	148130000	85157000	62974000	55444000	25027000	30417000	8785900	5292000	3493900	64730000	40285000	24445000	19171000	14553000	4617600	54934	128	51745	333199;333200;333201;333202;333203;333204;333205;333206;333207;333208;333209;333210;333211;333212	449371;449372;449373;449374;449375;449376;449377;449378;449379;449380;449381;449382;449383;449384	449377			14	
VKPVHPK	2	Unmodified	803.50176	0.50175812	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	4.7282	4.4335	3	0.024675	2216	160511_QHF_FH_JSI12i_3	43.124	43.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	712360000	0	712360000	180330000	0	180330000	198140000	0	198140000	0	0	0	333890000	0	333890000	54935	5058	51746	333213;333214;333215	449385;449386;449387	449387			3	
VKPVLLNSK	2	Unmodified	996.63317	0.63316622	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				26.138	24.784	3	0.00076583	20082	160511_QHF_FH_JSI9i_3	74.533	53.834			1.041	0.84112	NaN	1	1	Median	1.041	0.84112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178560000	94248000	84313000	178560000	94248000	84313000	0	0	0	0	0	0	0	0	0	54936	1537	51747	333216;333217	449388;449389	449388			2	
VKPVLMNSK	2	Unmodified	1014.5896	0.58958685	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	20.235	19.636	2;3	3.3809E-05	16194	160511_QHF_FH_JSI10i_3	85.355	74.481			0.8819	1.0395	77.368	8	1	Median	1.9651	1.582	164.63	2	1	Median	0.8819	1.0395	0.92402	2	0	Median	0.57314	0.53327	1.9854	2	0	Median	1.4377	1.4599	9.6089	2	0	Median	1293700000	621410000	672250000	342530000	122010000	220520000	244050000	141090000	102960000	212020000	131340000	80686000	495050000	226970000	268080000	54937	5230	51748	333218;333219;333220;333221;333222;333223;333224;333225	449390;449391;449392;449393;449394;449395;449396	449392			6	
VKPVVFLK	2	Unmodified	928.61097	0.61097422	2982	Q5VST9	OBSCN	Obscurin	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.526	41.943	3	0.0053208	34294	160511_QHF_FH_JSI9i_3	50.607	34.067			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54938	2982	51749	333226	449397	449397			1	
VKPYIIDLGSGNGTFLNNK	2	Unmodified	2049.0895	0.089490294	3680	Q8TAD8	SNIP1	Smad nuclear-interacting protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.892	77.133	3	1.1315E-09	63473	160511_QHF_FH_JSI9i_3	118.72	108.97			0.85222	0.8014	19.135	4	2	Median	0.92092	0.73268	NaN	1	1	Median	0.78865	0.87656	NaN	1	0	Median	1.0711	0.99666	NaN	1	0	Median	0.62803	0.64637	NaN	1	1	Median	207780000	111170000	96611000	51986000	23557000	28430000	30569000	17473000	13095000	67631000	31157000	36474000	57594000	38982000	18612000	54939	3680	51750	333227;333228;333229;333230	449398;449399;449400;449401	449400			4	
VKPYLPMIIAPLFR	1	Unmodified	1656.9789	0.97894097	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			92.13	86.409	3	0.0081001	49397	160513_QHF_FH_JSI10Kac_6	57.804	39.44			0.69575	0.8316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69575	0.8316	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	97040000	55003000	42037000	0	0	0	97040000	55003000	42037000	0	0	0	0	0	0	54940	557	51751	333231	449402	449402			1	
VKQIESK	2	Acetyl (K)	872.49673	0.49673232	973	P10599	TXN	Thioredoxin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	16.36	9.09	2	0.00057973	6724	160513_QHF_FH_JSI12Kac_3	116.73	15.082			0.8611	1.1809	17.863	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8461	1.0067	NaN	1	0	Median	0.8611	0.83561	NaN	1	0	Median	1.0863	1.1943	NaN	1	0	Median	61710000	33939000	27771000	0	0	0	20243000	10928000	9314800	10837000	5926600	4910000	30630000	17084000	13546000	54941	973	51752	333232;333233;333234	449403;449404;449405;449406;449407;449408	449405	745		6	
VKSINNPDMR	1	Acetyl (K);Oxidation (M)	1230.6027	0.60267073	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	26.418	18.468	2	5.5143E-06	11306	160513_QHF_FH_JSI12Kac_3	110.39	90.61			0.82995	0.98226	16.924	6	0	Median	NaN	NaN	NaN	0	0	Median	0.82995	0.98226	4.5823	2	0	Median	0.74333	0.74256	1.5892	2	0	Median	0.96001	1.0579	3.8889	2	0	Median	67472000	36857000	30615000	0	0	0	22190000	13024000	9165900	12834000	7356600	5477700	32448000	16476000	15972000	54942	1798	51753	333235;333236;333237;333238;333239;333240	449409;449410;449411;449412;449413;449414;449415;449416;449417;449418	449415	1817	1481	10	
VKSINNPDMR	1	Acetyl (K)	1214.6078	0.60775611	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	1	2	36.089	26.983	2	1.1346E-05	15340	160513_QHF_FH_JSI10Kac_3	110.38	93.842			0.93347	1.0641	18.595	5	0	Median	NaN	NaN	NaN	0	0	Median	0.92596	1.1064	5.5111	2	0	Median	0.74509	0.72396	NaN	1	0	Median	0.98886	1.0649	5.088	2	0	Median	149330000	78707000	70623000	0	0	0	61946000	33232000	28714000	36621000	19962000	16660000	50763000	25513000	25250000	54943	1798	51753	333241;333242;333243;333244;333245	449419;449420;449421;449422;449423;449424;449425;449426	449426	1817		8	
VKVDEVGGEALGR	1	Unmodified	1327.7096	0.70957864	72	CON__Q3SX09;CON__P02070			yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	35.403	34.818	2;3	3.1601E-05	29491	160511_QHF_FH_JSI12i_3	101.2	90.558		+	0.84955	0.94893	29.052	8	0	Median	0.74333	0.63828	1.4214	2	0	Median	0.76693	0.94893	1.7143	2	0	Median	1.0481	1.0202	13.537	2	0	Median	1.3275	1.3466	4.805	2	0	Median	1205800000	589100000	616680000	161220000	88710000	72514000	247350000	134700000	112660000	243750000	127570000	116170000	553460000	238120000	315330000	54944	72	51754	333246;333247;333248;333249;333250;333251;333252;333253	449427;449428;449429;449430;449431;449432;449433;449434;449435	449434			9	
VKVEHVVSVLEK	2	Unmodified	1364.8028	0.80275075	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	42.13	41.907	4	0.014929	35770	160511_QHF_FH_JSI12i_3	41.401	30.188			0.49633	0.49121	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49633	0.49121	NaN	1	1	Median	30246000	21355000	8890500	0	0	0	0	0	0	0	0	0	30246000	21355000	8890500	54945	5135	51755	333254	449436	449436			1	
VKVEPAVDTSR	1	Unmodified	1199.651	0.65100113	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	19.56	19.574	3	0.041203	15895	160511_QHF_FH_JSI12i_3	33.273	24.319			1.3546	1.3596	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3546	1.3596	NaN	1	1	Median	29564000	12180000	17384000	0	0	0	0	0	0	0	0	0	29564000	12180000	17384000	54946	512	51756	333255	449437	449437			1	
VKVEPSHDASK	2	Unmodified	1195.6197	0.619701	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								1	3	3	6.2958	6.2723	2;3;4	2.4111E-07	4043	160511_QHF_FH_JSI11i_3	97.463	82.091			0.97251	0.91755	27.234	7	1	Median	NaN	NaN	NaN	0	0	Median	0.42961	0.51713	NaN	1	1	Median	0.76349	0.72005	13.419	3	0	Plateau	1.0754	1.1085	6.2841	3	0	Plateau	1358000000	685090000	672940000	0	0	0	25923000	19710000	6212800	428200000	224300000	203900000	903910000	441090000	462820000	54947	1192	51757	333256;333257;333258;333259;333260;333261;333262	449438;449439;449440;449441;449442;449443;449444;449445;449446;449447	449439			10	
VKVPEVDVR	1	Unmodified	1039.6026	0.60259438	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By matching	3	0			3								1	1	1	36.557	36.023	3	0.0030873	31465	160511_QHF_FH_JSI11i_3	53.569	43.282			0.97785	0.95963	3.4796	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.79696	0.92444	NaN	1	0	Median	0.98047	0.93378	NaN	1	0	Median	0.97785	0.98619	NaN	1	0	Median	338060000	158690000	179370000	0	0	0	38212000	19586000	18625000	127660000	58402000	69256000	172190000	80700000	91491000	54948	2286	51758	333263;333264;333265	449448;449449	449448			2	
VKYEETVFYGLQYILNK	2	Unmodified	2106.1037	0.10374338	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.636	84.288	3	1.3188E-11	47133	160513_QHF_FH_JSI11Kac_6	130.29	113.8			0.60457	0.98745	28.56	4	1	Linear	0.9722	0.82032	NaN	1	0	Median	0.58232	0.69079	NaN	1	0	Median	1.2173	1.1886	NaN	1	0	Median	1.1674	1.2414	NaN	1	1	Median	623700000	334910000	288790000	141050000	74863000	66183000	218640000	147780000	70867000	91598000	43474000	48124000	172420000	68800000	103620000	54949	1566	51759	333266;333267;333268;333269	449450;449451;449452;449453;449454;449455	449450			6	
VKYETELAMR	1	Oxidation (M)	1254.6278	0.62782285	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.36		1	6						1	1	2	3	2	25.455	23.847	2;3	0.0085265	19067	160511_QHF_FH_JSI11i_3	49.777	43.117			0.87658	0.8761	12.524	8	0	Median	0.79275	0.67072	NaN	1	0	Median	0.73403	0.8498	5.3049	2	0	Median	0.97725	0.92366	8.6133	3	0	Median	0.87658	0.90615	5.7655	2	0	Median	907810000	464420000	443390000	71527000	29878000	41649000	89044000	53630000	35413000	429550000	205030000	224520000	317690000	175890000	141810000	54950	842	51760	333270;333271;333272;333273;333274;333275;333276;333277	449456;449457;449458;449459;449460;449461	449456		363	4	
VKYETELAMR	1	Unmodified	1238.6329	0.63290823	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.47		10	6						4	6	4	5	5	34.891	32.428	2;3	1.0841E-09	28053	160511_QHF_FH_JSI11i_3	111.86	97.62			1.0853	1.0132	44.276	20	4	Median	1.0651	0.89131	66.446	6	1	Median	0.58007	0.69749	5.1619	4	2	Median	1.1571	1.0893	38.028	5	0	Median	1.1661	1.2469	14.201	5	1	Median	8061800000	3834500000	4227400000	890880000	354820000	536060000	1184800000	733040000	451760000	2891100000	1326600000	1564500000	3095000000	1420000000	1675000000	54951	842	51760	333278;333279;333280;333281;333282;333283;333284;333285;333286;333287;333288;333289;333290;333291;333292;333293;333294;333295;333296;333297	449462;449463;449464;449465;449466;449467;449468;449469;449470;449471;449472;449473;449474;449475;449476;449477;449478;449479;449480;449481;449482;449483;449484;449485;449486;449487;449488;449489;449490	449463			29	
VKYETELAMR	1	Acetyl (K);Oxidation (M)	1296.6384	0.63838754	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	1	0	1	1		By matching	By MS/MS		14	0							2				1	1		45.603	35.382	2	0.021419	21023	160513_QHF_FH_JSI11Kac_4	44.309	38.828			0.63714	0.68395	120.85	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3586	1.6075	NaN	1	0	Median	0.29881	0.291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	17228000	10951000	6276800	0	0	0	6489800	2626400	3863400	10738000	8324800	2413400	0	0	0	54952	842	51760	333298;333299	449491	449491	500	363	1	
VKYFNIK	2	Acetyl (K)	952.5382	0.53820321	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.6	0.495								3	4	1	2	2	2	58.944	49.017	2	0.029511	26975	160513_QHF_FH_JSI10Kac_6	70.67	38.199			0.83677	0.96887	29.374	7	1	Median	1.444	1.2235	NaN	1	0	Median	0.82672	0.97354	0.68128	2	1	Median	0.68554	0.67533	48.782	2	0	Median	0.86062	0.92073	8.7426	2	0	Median	241700000	124190000	117510000	40619000	16882000	23737000	79667000	39601000	40066000	57283000	35492000	21792000	64131000	32216000	31914000	54953	4879	51761	333300;333301;333302;333303;333304;333305;333306	449492;449493;449494;449495;449496;449497	449497			6	
VLAAGGLGQGGGGGQSSVLSGISLYDPR	0	Unmodified	2572.3245	0.32452862	5466	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			90.744	89.692	3	0.04651	74917	160511_QHF_FH_JSI10i_3	16.666	9.7132			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5107400	0	5107400	0	0	0	5107400	0	5107400	0	0	0	0	0	0	54954	5466	51762	333307	449498	449498			1	
VLAALAASSGSSSASSSSAPVAASSGQATTQSK	1	Unmodified	2923.4371	0.43705178	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									3	2	2	1	49.691	49.009	3	1.2775E-09	43442	160511_QHF_FH_JSI9i_1	64.209	61.38			0.95827	1.0001	36.176	7	7	Median	0.96473	0.78077	72.253	2	2	Median	0.83588	0.97021	24.722	2	2	Median	0.89172	0.84998	36.828	2	2	Median	0.95827	1.0001	NaN	1	1	Median	210710000	112310000	98402000	48998000	24327000	24671000	54788000	27900000	26887000	68644000	35592000	33052000	38284000	24493000	13791000	54955	2947	51763	333308;333309;333310;333311;333312;333313;333314;333315	449499;449500;449501;449502;449503;449504;449505;449506;449507;449508;449509;449510	449507			12	
VLAALQER	0	Unmodified	898.52362	0.52361577	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	28.987	28.408	2	0.020218	24908	160511_QHF_FH_JSI10i_2	46.021	27.216			1.306	1.3452	35.702	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.8804	2.2533	9.3594	2	0	Median	1.1352	1.1041	NaN	1	0	Median	1.3785	1.4341	NaN	1	0	Median	1647800000	722710000	925100000	0	0	0	494650000	194110000	300530000	578780000	258240000	320540000	574390000	270360000	304030000	54956	4309	51764	333316;333317;333318;333319	449511;449512;449513;449514	449512			4	
VLAAVYK	1	Unmodified	762.46398	0.46397563	803;944	P04075;P05062;P09972	ALDOA;ALDOB;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase B;Fructose-bisphosphate aldolase C	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.42	6.6	2	4	4				1	4	4	4	4	6	5	32.042	27.229	2	0.013952	23870	160511_QHF_FH_JSI11i_1	66.994	10.483			0.87562	0.92052	45.746	19	4	Median	1.1588	0.9923	67.668	4	1	Median	0.92123	1.0548	64.847	4	2	Median	0.81082	0.81147	13.966	6	0	Median	0.78923	0.85195	49.173	5	1	Median	29220000000	14730000000	14490000000	5504600000	2922200000	2582400000	5177400000	2664300000	2513000000	11502000000	5527300000	5974200000	7036700000	3616600000	3420100000	54957	803;944	51765	333320;333321;333322;333323;333324;333325;333326;333327;333328;333329;333330;333331;333332;333333;333334;333335;333336;333337;333338	449515;449516;449517;449518;449519;449520;449521;449522;449523;449524;449525;449526;449527;449528;449529;449530;449531;449532;449533;449534;449535;449536;449537;449538;449539;449540;449541;449542	449517			28	
VLADHAR	0	Unmodified	780.42424	0.42423608	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		4	1						4	2	2	2	3	5.3254	1.8061	2	0.0085928	1729	160513_QHF_FH_JSI11Kac_6	86.866	51.761			0.97446	1.0072	14.706	9	1	Median	1.3276	1.1333	16.938	2	0	Median	0.94487	1.1232	0.79065	2	0	Median	0.9238	0.91322	6.206	2	0	Median	0.91281	1.0072	15.576	3	1	Median	2819900000	1522100000	1297800000	493380000	242780000	250600000	680920000	376840000	304080000	484250000	263820000	220440000	1161400000	638670000	522700000	54958	1664	51766	333339;333340;333341;333342;333343;333344;333345;333346;333347	449543;449544;449545;449546;449547;449548;449549	449544			7	
VLADLAIYEPK	1	Unmodified	1230.686	0.68598966	4542	Q9BYC9	MRPL20	39S ribosomal protein L20, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	70.312	69.015	2	9.9467E-05	59460	160511_QHF_FH_JSI12i_2	87.298	65.212			1.345	1.4708	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.345	1.4708	NaN	1	0	Median	45458000	15021000	30437000	0	0	0	0	0	0	0	0	0	45458000	15021000	30437000	54959	4542	51767	333348	449550	449550			1	
VLADLGRK	1	Unmodified	870.5287	0.52870115	1929	P61011	SRP54	Signal recognition particle 54 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.8	0.4		1	4							2	2	1		18.664	17.514	3	0.0018534	14465	160511_QHF_FH_JSI11i_3	60.436	17.838			0.69392	0.55659	100.93	3	3	Median	1.2341	0.99363	81.96	2	2	Median	0.21149	0.2375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	441410000	223680000	217730000	309480000	121330000	188150000	131930000	102350000	29580000	0	0	0	0	0	0	54960	1929	51768	333349;333350;333351;333352;333353	449551;449552;449553;449554;449555	449551			5	
VLADPSDDTK	1	Unmodified	1059.5084	0.50841922	2636;1898	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.586	17.103	2	0.00010658	14603	160511_QHF_FH_JSI11i_1	99.802	74.065			0.74015	0.8992	18.127	4	2	Linear	0.87286	0.72231	NaN	1	0	Median	0.6711	0.79544	NaN	1	0	Median	1.0356	1.0165	NaN	1	1	Median	1.0048	1.0423	NaN	1	1	Median	2098900000	1161100000	937800000	544460000	286260000	258200000	562680000	333940000	228740000	458460000	258810000	199650000	533340000	282120000	251220000	54961	2636;1898	51769	333354;333355;333356;333357	449556;449557;449558;449559;449560	449556			5	
VLAEIPRPLK	1	Unmodified	1134.7125	0.71247918	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	48.811	47.958	3	0.0004119	42249	160511_QHF_FH_JSI11i_3	68.657	53.513			1.0285	0.91396	10.969	4	0	Median	1.134	0.91031	NaN	1	0	Median	0.74784	0.86513	NaN	1	0	Median	0.97029	0.91761	NaN	1	0	Median	1.0902	1.1105	NaN	1	0	Median	465050000	248320000	216720000	125490000	59661000	65829000	124740000	72041000	52695000	163910000	94215000	69699000	50907000	22407000	28500000	54962	3760	51770	333358;333359;333360;333361	449561;449562;449563;449564	449562			4	
VLAELPIIVVLMYQLYK	1	Unmodified	2004.1733	0.17334327	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.28	95.816	3	2.2234E-17	54470	160513_QHF_FH_JSI9Kac_6	144.12	112.89			1.172	1.188	9.7267	2	0	Median	1.4781	1.2726	NaN	1	0	Median	0.92924	1.109	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127500000	62089000	65414000	52658000	21350000	31308000	74845000	40739000	34105000	0	0	0	0	0	0	54963	5618	51771	333362;333363	449565;449566;449567	449565			3	
VLAELYVSDR	0	Unmodified	1163.6186	0.61863837	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			18.389	17.638	3	0.060799	14987	160511_QHF_FH_JSI10i_2	12.576	0.00070095			0.71363	0.88352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.71363	0.88352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	423110000	265720000	157390000	0	0	0	423110000	265720000	157390000	0	0	0	0	0	0	54964	375	51772	333364	449568	449568			1	
VLAELYVSDREGSDATGDGTK	1	Unmodified	2182.039	0.038970866	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	48.659	47.944	2;3	6.6157E-13	42415	160511_QHF_FH_JSI11i_3	118.32	108.57			0.91915	0.93009	21.551	9	6	Median	1.3486	1.1652	21.487	2	2	Median	0.79392	0.96502	17.058	2	2	Median	1.0231	0.99032	8.8727	2	1	Median	0.8637	0.91951	24.134	3	1	Median	1202200000	587450000	614760000	216280000	85213000	131060000	287560000	154530000	133030000	329200000	140610000	188590000	369170000	207100000	162070000	54965	375	51773	333365;333366;333367;333368;333369;333370;333371;333372;333373;333374	449569;449570;449571;449572;449573;449574;449575;449576;449577;449578;449579;449580;449581;449582;449583	449570			15	
VLAEPVPLPADPMELK	1	Unmodified	1717.9324	0.93244429	2678	Q15526	SURF1	Surfeit locus protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	92.944	92.684	2	0.00022778	84475	160511_QHF_FH_JSI11i_1	75.479	56.733			0.96986	1.0293	24.736	3	0	Median	NaN	NaN	NaN	0	0	Median	0.60402	0.72425	NaN	1	0	Median	1.2181	1.1672	NaN	1	0	Median	0.96986	1.0293	NaN	1	0	Median	161260000	84950000	76311000	0	0	0	54280000	29122000	25158000	61914000	32283000	29630000	45068000	23546000	21523000	54966	2678	51774	333375;333376;333377	449584;449585;449586	449584			2	
VLAETPDSFEK	1	Unmodified	1234.6081	0.60813326	4284	Q99567	NUP88	Nuclear pore complex protein Nup88	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				42.834	41.62	2	0.012556	36981	160511_QHF_FH_JSI9i_1	54.539	34.753			0.1883	0.15436	NaN	1	1	Median	0.1883	0.15436	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	706060000	631210000	74845000	706060000	631210000	74845000	0	0	0	0	0	0	0	0	0	54967	4284	51775	333378	449587	449587			1	
VLAFFETDMERR	0	Unmodified	1512.7395	0.73949856	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			67.58	66.091	3	0.0092592	55377	160511_QHF_FH_JSI10i_3	36.447	32.843			1.1427	1.308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1427	1.308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	49194000	19328000	29865000	0	0	0	49194000	19328000	29865000	0	0	0	0	0	0	54968	4047	51776	333379;333380	449588;449589	449588			2	
VLAFGAKPDSTLHTYFPSFLSR	1	Unmodified	2453.2743	0.27433095	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	1	By MS/MS			By matching	16	0									2	1			1	86.14	77.113	4	0.00033562	42467	160513_QHF_FH_JSI9Kac_6	59.614	51.426			1.0556	1.0005	3.0733	2	0	Median	1.1668	0.97898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95501	1.0225	NaN	1	0	Median	158210000	67407000	90803000	129630000	53667000	75964000	0	0	0	0	0	0	28579000	13740000	14839000	54969	3074	51777	333381;333382	449590	449590			1	
VLAFLSSVAGDALTR	0	Unmodified	1518.8406	0.84059282	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.26	4.57		10	10						3	7	6	6	4	94.343	93.008	2;3	3.0058E-06	83283	160511_QHF_FH_JSI9i_2	121.08	105.81			0.23129	0.24654	167.37	23	23	Median	0.48806	0.4259	182.39	7	7	Median	0.17236	0.20937	178.71	6	6	Median	0.32585	0.32264	169	6	6	Median	0.27175	0.2862	182.34	4	4	Median	625600000	323520000	302080000	222500000	81741000	140760000	184540000	130790000	53747000	144350000	70152000	74200000	74210000	40834000	33376000	54970	3860	51778	333383;333384;333385;333386;333387;333388;333389;333390;333391;333392;333393;333394;333395;333396;333397;333398;333399;333400;333401;333402;333403;333404;333405	449591;449592;449593;449594;449595;449596;449597;449598;449599;449600;449601;449602;449603;449604;449605;449606;449607;449608;449609;449610;449611;449612;449613	449601			23	
VLAGETLSVNDPPDVLDR	0	Unmodified	1908.9793	0.97927114	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	3	2	3	74.359	73.738	2;3	4.5216E-237	67222	160511_QHF_FH_JSI12i_1	347.46	310.32			0.98563	1.0245	13.064	10	3	Median	1.3412	1.1066	13.951	3	1	Plateau	0.99781	1.1662	6.0069	3	1	Median	1.0095	0.98605	5.7971	2	0	Median	0.79453	0.8663	4.0485	2	1	Median	1530500000	797120000	733370000	265160000	112680000	152480000	566580000	297960000	268620000	373770000	200750000	173010000	324990000	185730000	139270000	54971	2325	51779	333406;333407;333408;333409;333410;333411;333412;333413;333414;333415;333416	449614;449615;449616;449617;449618;449619;449620;449621;449622;449623;449624;449625;449626;449627;449628;449629;449630	449620			16	
VLAGETLSVNDPPDVLDRQK	1	Unmodified	2165.1328	0.13281167	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	65.459	65.165	3	4.3065E-05	56279	160511_QHF_FH_JSI12i_3	63.691	45.528			0.74972	0.7783	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74972	0.7783	NaN	1	0	Median	46758000	25717000	21041000	0	0	0	0	0	0	0	0	0	46758000	25717000	21041000	54972	2325	51780	333417	449631;449632	449631			2	
VLAGLIR	0	Unmodified	740.49086	0.49085908	3347	Q86VV8	RTTN	Rotatin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.14	6.48	1	4	4					1	4	4	3	4	3	47.713	43.741	2	1.2345E-06	35848	160511_QHF_FH_JSI9i_3	154.44	0			0.97042	0.97902	14.812	14	0	Median	1.6268	1.3211	16.461	4	0	Linear	1.0219	1.1959	9.7563	3	0	Plateau	0.96892	0.94265	9.0782	4	0	Median	0.89601	0.93464	9.7122	3	0	Median	15289000000	7095800000	8193100000	3094300000	1144800000	1949600000	3809800000	1807600000	2002300000	4044400000	1847600000	2196800000	4340300000	2295800000	2044500000	54973	3347	51781	333418;333419;333420;333421;333422;333423;333424;333425;333426;333427;333428;333429;333430;333431	449633;449634;449635;449636;449637;449638;449639;449640;449641;449642;449643;449644;449645;449646;449647;449648;449649;449650;449651;449652;449653;449654;449655	449644			23	
VLAGLYMGR	0	Unmodified	978.53207	0.53207197	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	51.5	50.653	2	0.010704	42363	160511_QHF_FH_JSI10i_3	49.65	28.385			1.0089	1.0453	19.477	4	0	Median	1.6407	1.3179	NaN	1	0	Median	0.9167	1.0433	NaN	1	0	Median	1.1104	1.0472	NaN	1	0	Median	0.80681	0.81798	NaN	1	0	Median	700800000	362090000	338710000	145990000	68764000	77224000	157940000	88751000	69186000	162470000	73588000	88881000	234410000	130980000	103420000	54974	3860	51782	333432;333433;333434;333435	449656;449657;449658;449659	449657			4	
VLAGLYMGR	0	Oxidation (M)	994.52699	0.52698659	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			45.979	37.076	2	0.03528	19804	160513_QHF_FH_JSI9Kac_6	40.103	16.131			1.0136	1.0045	5.4357	2	0	Median	1.2413	1.0439	NaN	1	0	Median	0.82769	0.96663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41277000	22875000	18403000	16904000	8646700	8257200	24373000	14228000	10146000	0	0	0	0	0	0	54975	3860	51782	333436;333437	449660	449660			1	
VLAGQTLDINMAGEPKPDRPK	2	Unmodified	2249.1838	0.18380139	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		53.994	53.058	3;4	2.1224E-09	46857	160511_QHF_FH_JSI11i_3	100.28	87.801			0.89259	0.97035	17.537	5	0	Median	1.3435	1.1129	NaN	1	0	Median	0.94349	1.0793	15.049	2	0	Median	0.88418	0.81963	4.4554	2	0	Median	NaN	NaN	NaN	0	0	Median	466470000	253100000	213370000	33152000	16022000	17129000	155240000	92226000	63011000	278080000	144860000	133230000	0	0	0	54976	5375	51783	333438;333439;333440;333441;333442	449661;449662;449663;449664;449665;449666	449662			4	
VLAIAQNFV	0	Unmodified	973.55967	0.55966693	3091	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	6.03	4	4					3	1		2	4	3	3	84.912	81.022	2	0.00065646	76694	160511_QHF_FH_JSI11i_1	76.592	64.687			0.911	0.97584	11.446	12	1	Median	1.2086	1.0202	3.1211	2	0	Median	0.79724	0.93482	13.442	4	1	Median	0.99362	0.97681	7.7069	3	0	Median	0.87715	0.94257	13.781	3	0	Plateau	276680000	139950000	136730000	54014000	27815000	26198000	82408000	42033000	40375000	74412000	33284000	41128000	65844000	36815000	29029000	54977	3091	51784	333443;333444;333445;333446;333447;333448;333449;333450;333451;333452;333453;333454	449667;449668;449669;449670;449671;449672;449673;449674;449675;449676;449677;449678;449679	449667			13	
VLAINILGR	0	Unmodified	967.61785	0.61785051	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	73.537	72.736	2	0.00012089	59887	160511_QHF_FH_JSI9i_3	91.906	43.403			0.90314	0.89384	6.578	4	0	Median	1.0407	0.86386	NaN	1	0	Median	0.82584	0.94532	NaN	1	0	Median	0.98768	0.92486	NaN	1	0	Median	0.80993	0.81839	NaN	1	0	Median	229650000	124500000	105150000	71846000	37325000	34521000	59939000	33190000	26749000	46431000	26525000	19906000	51434000	27464000	23970000	54978	369	51785	333455;333456;333457;333458	449680;449681;449682;449683;449684	449683			5	
VLALASGPELGQLTFLGLVGIIDPPR	0	Unmodified	2645.5156	0.51562386	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				101.24	92.066	3	1.0487E-34	53274	160513_QHF_FH_JSI9Kac_6	155.97	141.66			1.4678	1.2867	NaN	1	0	Median	1.4678	1.2867	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80119000	33604000	46515000	80119000	33604000	46515000	0	0	0	0	0	0	0	0	0	54979	2142	51786	333459	449685	449685			1	
VLALELFEQITK	1	Unmodified	1402.8072	0.80716742	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		4	1						1	1	2	1	2	100.74	99.721	2	2.0793E-16	89573	160511_QHF_FH_JSI11i_2	166.66	106.22			0.89397	0.91718	20.295	5	1	Median	NaN	NaN	NaN	0	0	Median	0.89191	1.0742	30.356	2	1	Median	0.89397	0.90576	NaN	1	0	Median	1.0052	1.0733	22.235	2	0	Median	959880000	472520000	487370000	65505000	0	65505000	198290000	102860000	95429000	270230000	144970000	125260000	425860000	224690000	201170000	54980	1162	51787	333460;333461;333462;333463;333464;333465	449686;449687;449688;449689;449690;449691;449692;449693;449694	449689			9	
VLALLDVPDK	1	Unmodified	1081.6383	0.63831118	5097	Q9NX62	IMPAD1	Inositol monophosphatase 3	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	71.976	71.46	2	8.8468E-05	64975	160511_QHF_FH_JSI11i_1	85.731	17.507			1.0537	1.0648	21.855	4	1	Median	1.8623	1.5236	NaN	1	1	Median	0.76429	0.90949	NaN	1	0	Median	1.0928	1.0565	NaN	1	0	Median	1.016	1.0731	NaN	1	0	Median	175480000	89584000	85891000	15608000	4571700	11036000	60815000	31494000	29320000	61331000	32574000	28757000	37721000	20945000	16777000	54981	5097	51788	333466;333467;333468;333469;333470	449695;449696;449697;449698	449695			4	
VLALPEPSPAAPTLR	0	Unmodified	1530.877	0.87697832	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.2	3.97	2	6	1					1		3	1	4	2	73.291	72.464	2;3	0.00026993	65945	160511_QHF_FH_JSI11i_1	82.379	57.162			1.0595	0.98783	11.539	9	3	Median	1.0637	0.9191	2.8165	3	1	Plateau	0.8147	0.95649	NaN	1	0	Median	1.2072	1.1946	12.736	3	1	Median	1.0023	1.102	1.0114	2	1	Median	551570000	265370000	286200000	110850000	51893000	58959000	52282000	28962000	23320000	250570000	118360000	132220000	137860000	66155000	71706000	54982	2636	51789	333471;333472;333473;333474;333475;333476;333477;333478;333479;333480	449699;449700;449701;449702;449703;449704;449705	449699			6	
VLALQAR	0	Unmodified	769.48102	0.48102268	4242	Q96SB4	SRPK1	SRSF protein kinase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	25.677	25.677	2	0.011007	21407	160511_QHF_FH_JSI12i_3	63.394	0			1.1901	1.1158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1901	1.1158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	119780000	54366000	65415000	0	0	0	0	0	0	119780000	54366000	65415000	0	0	0	54983	4242	51790	333481;333482	449706;449707	449707			2	
VLALSVETDYTFPLAEK	1	Unmodified	1894.9928	0.99279594	837	P05388	RPLP0	60S acidic ribosomal protein P0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.53	0.499	7	8								2	4	4	5	98.805	98.667	2;3	9.5153E-11	86546	160511_QHF_FH_JSI9i_2	182.07	165.69			0.79149	0.81569	17.054	13	3	Median	0.87642	0.77504	1.4038	2	0	Median	0.63947	0.74563	15.634	4	1	Median	0.8537	0.8585	8.9017	3	0	Plateau	0.81471	0.90032	29.001	4	2	Median	474040000	272990000	201050000	82959000	48672000	34287000	119440000	74690000	44746000	147210000	80368000	66838000	124440000	69257000	55181000	54984	837	51791	333483;333484;333485;333486;333487;333488;333489;333490;333491;333492;333493;333494;333495;333496;333497	449708;449709;449710;449711;449712;449713;449714;449715;449716;449717;449718;449719;449720;449721;449722;449723;449724;449725;449726;449727;449728;449729;449730;449731;449732;449733;449734	449723			26	
VLAMSGDPNYLHR	0	Unmodified	1471.7242	0.72418285	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.91		8	6					1	4	6	5	5	3	47.194	44.016	2;3	1.3289E-22	37629	160511_QHF_FH_JSI12i_3	180.67	161.89			1.1003	1.0371	15.763	19	3	Median	1.2996	1.0694	15.192	6	2	Median	0.91427	1.1191	19.232	5	1	Median	1.0569	1.004	10.772	5	0	Median	0.9561	1.0318	21.605	3	0	Median	6831400000	3295300000	3536100000	931620000	365860000	565760000	1678600000	810870000	867770000	3084500000	1547200000	1537300000	1136600000	571340000	565250000	54985	1345	51792	333498;333499;333500;333501;333502;333503;333504;333505;333506;333507;333508;333509;333510;333511;333512;333513;333514;333515;333516	449735;449736;449737;449738;449739;449740;449741;449742;449743;449744;449745;449746;449747;449748;449749;449750;449751;449752;449753;449754;449755;449756;449757;449758;449759;449760;449761	449761			27	
VLAMSGDPNYLHR	0	Oxidation (M)	1487.7191	0.71909747	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	1	0	By MS/MS	By matching		By MS/MS	12.2	5.93		1						1	2	2	1		1	37.497	30.275	3	0.0096164	16738	160513_QHF_FH_JSI9Kac_5	35.737	21.728			1.4559	1.238	25.819	4	0	Median	1.4581	1.238	6.4645	2	0	Median	1.4862	1.7394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84218	0.93144	NaN	1	0	Median	96250000	47311000	48939000	13017000	5653800	7363100	5741300	2323100	3418200	0	0	0	77492000	39334000	38158000	54986	1345	51792	333517;333518;333519;333520	449762;449763;449764	449763		988	2	
VLANLFLLISSILGSR	0	Unmodified	1715.0345	0.034541598	529	O75448	MED24	Mediator of RNA polymerase II transcription subunit 24	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.84	98.119	3	0.0002787	58111	160513_QHF_FH_JSI10Kac_6	91.355	79.664			1.3942	1.6423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3942	1.6423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16712000	7630900	9080800	0	0	0	16712000	7630900	9080800	0	0	0	0	0	0	54987	529	51793	333521	449765	449765			1	
VLANNSLSFEK	1	Unmodified	1220.6401	0.6401021	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	45.29	44.504	2	2.4969E-05	38213	160511_QHF_FH_JSI11i_2	100.48	51.059			1.219	1.259	45.987	6	1	Median	1.3001	1.1065	NaN	1	0	Median	1.0845	1.3121	9.6951	2	0	Median	2.1586	2.1135	69.4	2	1	Median	0.8342	0.93401	NaN	1	0	Median	564690000	225530000	339160000	82747000	25636000	57111000	163590000	66568000	97019000	200420000	79333000	121090000	117930000	53996000	63936000	54988	602	51794	333522;333523;333524;333525;333526;333527	449766;449767;449768;449769;449770;449771;449772;449773;449774;449775	449772			10	
VLANPGNSQVAR	0	Unmodified	1224.6575	0.65748349	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	23.322	19.613	2	7.5457E-08	12644	160513_QHF_FH_JSI11Kac_4	107.79	67.685			0.9897	0.99045	14.677	19	1	Median	1.1812	0.99167	14.298	4	1	Median	0.83289	0.98175	10.638	5	0	Median	1.0193	0.99787	14.335	5	0	Median	1.0365	1.1243	17.844	5	0	Median	6583300000	3495300000	3088000000	1148000000	598180000	549830000	1533800000	911950000	621820000	2015900000	997370000	1018500000	1885600000	987780000	897860000	54989	2585	51795	333528;333529;333530;333531;333532;333533;333534;333535;333536;333537;333538;333539;333540;333541;333542;333543;333544;333545;333546	449776;449777;449778;449779;449780;449781;449782;449783;449784;449785;449786;449787;449788;449789;449790;449791;449792;449793;449794;449795;449796;449797;449798;449799;449800;449801;449802;449803;449804;449805;449806;449807;449808;449809;449810	449791			35	
VLANQYK	1	Unmodified	834.45995	0.45995289	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	12.925	12.391	2	0.018612	9639	160511_QHF_FH_JSI11i_2	59.641	23.455			0.89876	0.96593	12.086	5	0	Median	1.1679	0.99497	NaN	1	0	Median	0.81975	1.0266	NaN	1	0	Median	0.94525	0.94715	NaN	1	0	Median	0.81477	0.85508	17.238	2	0	Median	846800000	420110000	426680000	204470000	87771000	116700000	107190000	60622000	46564000	216360000	117150000	99213000	318780000	154570000	164210000	54990	1356	51796	333547;333548;333549;333550;333551	449811;449812;449813;449814;449815	449815			5	
VLAPASTLQSSYQIPTENSMTAR	0	Unmodified	2464.2268	0.22678841	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								3	3	4	3	73.777	73.153	2;3	1.4368E-30	66696	160511_QHF_FH_JSI12i_1	182.1	163.64			1.0335	1.0442	13.613	12	0	Median	1.2879	1.1318	3.9432	3	0	Plateau	1.0418	1.222	8.5307	3	0	Median	1.0455	1.0252	11.644	3	0	Plateau	0.8777	0.99726	5.1413	3	0	Plateau	696860000	338250000	358610000	118610000	48132000	70479000	192540000	98454000	94084000	218570000	103950000	114620000	167140000	87715000	79426000	54991	2493	51797	333552;333553;333554;333555;333556;333557;333558;333559;333560;333561;333562;333563;333564	449816;449817;449818;449819;449820;449821;449822;449823;449824;449825;449826;449827;449828;449829;449830;449831;449832;449833;449834	449824			19	
VLAPELIPSILEK	1	Unmodified	1420.8541	0.85411762	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		101.07	100.98	2	8.6915E-05	89448	160511_QHF_FH_JSI10i_2	97.214	71.593			0.75139	0.89845	10.43	3	2	Plateau	1.0239	0.89845	NaN	1	1	Median	0.75139	0.94332	NaN	1	0	Median	0.76633	0.7723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	214590000	120170000	94424000	45863000	20666000	25197000	97002000	60828000	36174000	71725000	38672000	33053000	0	0	0	54992	1716	51798	333565;333566;333567	449835;449836;449837;449838	449837			4	
VLAPQISFAPEIASEEERK	1	Unmodified	2113.1055	0.10553429	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.55	3.68	1	4	5					1		2	2	5	2	76.845	75.109	2;3	3.0031E-20	65642	160511_QHF_FH_JSI12i_3	169.25	159.3			1.1566	1.0843	17.513	10	0	Median	1.286	1.0529	11.043	2	0	Median	1.0171	1.2126	15.807	2	0	Median	1.2225	1.1763	17.521	4	0	Median	0.82105	0.85787	6.2501	2	0	Median	5410700000	2753900000	2656700000	629800000	271840000	357970000	821020000	374190000	446820000	2407400000	1224200000	1183200000	1552500000	883680000	668780000	54993	1090	51799	333568;333569;333570;333571;333572;333573;333574;333575;333576;333577;333578	449839;449840;449841;449842;449843;449844;449845;449846;449847;449848;449849;449850;449851;449852;449853;449854;449855;449856;449857;449858;449859;449860;449861	449859			23	
VLAQATSDLVNAMR	0	Unmodified	1487.7766	0.77661235	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65.894	65.332	2	0.0095054	57000	160511_QHF_FH_JSI11i_2	46.73	29.294			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54994	5628	51800	333579	449862	449862			1	
VLAQNAGYDPQETLVK	1	Unmodified	1744.8996	0.89956426	3835	Q92526	CCT6B	T-complex protein 1 subunit zeta-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.33	0.471	2	1								1	1		1	74.448	73.938	2	0.00068325	65289	160511_QHF_FH_JSI9i_2	76.533	52.547			2.5329	2.7374	87.69	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2978	1.4725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.9432	5.089	NaN	1	1	Median	40169000	9825100	30344000	7716100	0	7716100	23674000	8393700	15281000	0	0	0	8778600	1431500	7347100	54995	3835	51801	333580;333581;333582	449863;449864;449865	449865			3	
VLAQNSGFDLQETLVK	1	Unmodified	1760.9309	0.93086439	1494	P40227	CCT6A	T-complex protein 1 subunit zeta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.7	0.714	9	8	3							5	5	4	6	75.088	74.384	2;3	3.0306E-56	64541	160511_QHF_FH_JSI12i_3	194.24	159.86			0.92493	0.98978	74.5	19	3	Median	1.0832	1.0486	47.479	5	1	Linear	0.81516	0.99099	6.8256	5	1	Median	1.0053	1.0067	11.687	4	0	Median	0.92493	1.0426	133.15	5	1	Median	5924300000	2855400000	3069000000	1124700000	573260000	551410000	1915600000	999710000	915920000	1066900000	534160000	532720000	1817200000	748230000	1068900000	54996	1494	51802	333583;333584;333585;333586;333587;333588;333589;333590;333591;333592;333593;333594;333595;333596;333597;333598;333599;333600;333601;333602	449866;449867;449868;449869;449870;449871;449872;449873;449874;449875;449876;449877;449878;449879;449880;449881;449882;449883;449884;449885;449886;449887;449888;449889;449890;449891;449892;449893;449894;449895;449896;449897;449898;449899;449900;449901	449901			36	
VLAQQGEYSEAIPILR	0	Unmodified	1785.9625	0.96249887	2528	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	76.723	76.014	3	0.00013312	67605	160511_QHF_FH_JSI10i_2	66.387	60.483			0.86373	1.0053	7.6153	5	0	Median	1.2029	1.0247	NaN	1	0	Median	0.82535	0.98902	2.3103	2	0	Median	0.86373	0.87707	NaN	1	0	Median	0.96223	1.0752	NaN	1	0	Median	355410000	186950000	168460000	89619000	39690000	49929000	126500000	72111000	54390000	84030000	47687000	36343000	55261000	27463000	27798000	54997	2528	51803	333603;333604;333605;333606;333607	449902;449903;449904;449905;449906;449907;449908	449908			5	
VLASDAAAFLK	1	Unmodified	1104.6179	0.61791009	1537	P42566	EPS15	Epidermal growth factor receptor substrate 15	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		65.104	64.557	2	0.049181	56222	160511_QHF_FH_JSI11i_2	43.651	28.977			0.97575	0.99098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97575	0.99098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61866000	41014000	20852000	0	0	0	0	0	0	61866000	41014000	20852000	0	0	0	54998	1537	51804	333608	449909	449909			1	
VLASLIIR	0	Unmodified	883.58549	0.58548775	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	69.52	59.88	2	0.039161	32455	160513_QHF_FH_JSI11Kac_6	46.835	13.023			0.91615	0.9438	12.836	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0648	1.0335	NaN	1	0	Median	0.78827	0.86191	NaN	1	0	Median	32599000	16804000	15795000	0	0	0	0	0	0	21668000	12267000	9401300	10931000	4537700	6393700	54999	3896	51805	333609;333610	449910	449910			1	
VLATAFDTTLGGR	0	Unmodified	1320.7038	0.70376498	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	6.25	4	4	4				2	4	1	5	5	5	4	65.628	61.296	2	3.0216E-15	52694	160511_QHF_FH_JSI12i_2	158.79	111.59			0.92995	1.0489	23.55	19	1	Median	1.2183	1.0489	22.998	5	0	Median	0.75774	0.902	10.529	5	0	Median	1.0781	1.063	29.582	5	0	Median	0.91982	0.96595	34.838	4	1	Median	5362400000	2832500000	2529900000	994910000	502310000	492600000	1278700000	717510000	561170000	1742600000	933470000	809140000	1346200000	679170000	667050000	55000	1417	51806	333611;333612;333613;333614;333615;333616;333617;333618;333619;333620;333621;333622;333623;333624;333625;333626;333627;333628;333629	449911;449912;449913;449914;449915;449916;449917;449918;449919;449920;449921;449922;449923;449924;449925;449926;449927;449928;449929;449930;449931;449932;449933;449934;449935;449936;449937;449938	449915			28	
VLATAFDTTLGGRK	1	Unmodified	1448.7987	0.798728	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			52.482	50.911	2;3	3.9403E-05	42515	160511_QHF_FH_JSI10i_3	74.789	74.789			1.027	1.0906	30.938	3	1	Plateau	1.2088	0.97235	NaN	1	0	Median	0.75251	0.8633	42.661	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	307870000	151890000	155980000	131220000	65353000	65867000	176650000	86533000	90114000	0	0	0	0	0	0	55001	1417	51807	333630;333631;333632	449939;449940;449941;449942;449943	449940			5	
VLATEDRSDHLIQTDTVNLHR	0	Unmodified	2432.2408	0.24079899	1729	P51151	RAB9A	Ras-related protein Rab-9A	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			47.34	45.776	5	1.0854E-05	38239	160511_QHF_FH_JSI10i_3	63.578	55.357			1.2107	1.3834	19.467	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2107	1.3834	19.467	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73177000	30216000	42962000	0	0	0	73177000	30216000	42962000	0	0	0	0	0	0	55002	1729	51808	333633;333634	449944;449945	449944			2	
VLATQPGPGR	0	Unmodified	994.55598	0.55597854	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.833	3	2	2							1	1	2	3	15.681	15.334	2	0.00054212	12206	160511_QHF_FH_JSI12i_3	71.379	46.457			0.89111	0.93713	36.803	7	0	Median	0.89111	0.74815	NaN	1	0	Median	0.69531	0.81568	NaN	1	0	Median	1.2573	1.1956	59.925	2	0	Median	0.96417	0.98582	32.558	3	0	Median	563090000	283450000	279650000	74963000	38160000	36803000	96838000	59900000	36938000	174490000	73879000	100610000	216800000	111510000	105290000	55003	2904	51809	333635;333636;333637;333638;333639;333640;333641	449946;449947;449948;449949;449950;449951;449952;449953;449954;449955	449955			10	
VLATTFDPYLGGR	0	Unmodified	1408.7351	0.73506511	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	70.843	70.164	2	9.9659E-05	60450	160511_QHF_FH_JSI12i_2	119.22	119.22			1.0378	1.0433	5.5591	7	2	Median	1.1386	0.9708	NaN	1	0	Median	0.85299	1.0267	9.292	2	1	Median	1.0678	1.0513	1.0735	2	0	Median	0.98007	1.0632	6.0284	2	1	Median	1057100000	528460000	528640000	148560000	78973000	69588000	264290000	138990000	125290000	454240000	203060000	251180000	190020000	107440000	82586000	55004	723	51810	333642;333643;333644;333645;333646;333647;333648	449956;449957;449958;449959;449960;449961;449962;449963;449964	449958			9	
VLATVTK	1	Unmodified	730.45889	0.45889025	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1.67	0.471	1	2								1	1		1	16.8	16.139	2	0.034446	13484	160511_QHF_FH_JSI9i_2	50.127	5.4344			1.3472	1.1279	45.641	3	1	Plateau	1.3472	1.1279	NaN	1	0	Median	0.39617	0.48957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95218	1.0236	NaN	1	0	Median	1320600000	726900000	593730000	568070000	269730000	298340000	358040000	223800000	134240000	0	0	0	394520000	233370000	161150000	55005	2196	51811	333649;333650;333651	449965;449966	449965			2	
VLATVTKPVGGDK	2	Unmodified	1283.7449	0.74490152	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.28	6	14	15				2	3	4	9	12	10	13	27.501	25.181	2;3	7.1106E-07	21742	160511_QHF_FH_JSI9i_2	189.58	131.73			1.1893	1.0397	104.79	43	36	Median	1.1893	1.0397	80.801	9	7	Median	1.3833	1.6104	115.22	11	11	Median	1.0988	1.077	112.6	10	8	Median	0.82017	0.86699	116.02	13	10	Median	51046000000	24740000000	26306000000	6100200000	2915300000	3184900000	8495400000	4448400000	4047000000	13829000000	7468500000	6360200000	22622000000	9907800000	12714000000	55006	2196	51812	333652;333653;333654;333655;333656;333657;333658;333659;333660;333661;333662;333663;333664;333665;333666;333667;333668;333669;333670;333671;333672;333673;333674;333675;333676;333677;333678;333679;333680;333681;333682;333683;333684;333685;333686;333687;333688;333689;333690;333691;333692;333693;333694;333695	449967;449968;449969;449970;449971;449972;449973;449974;449975;449976;449977;449978;449979;449980;449981;449982;449983;449984;449985;449986;449987;449988;449989;449990;449991;449992;449993;449994;449995;449996;449997;449998;449999;450000;450001;450002;450003;450004;450005;450006;450007;450008;450009;450010;450011;450012;450013;450014;450015;450016;450017	449997			51	
VLAVNHVFEIILEYLETR	0	Unmodified	2157.1834	0.18339068	3698	Q8TBZ6	TRMT10A	tRNA methyltransferase 10 homolog A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.77	95.047	3	1.3024E-06	56045	160513_QHF_FH_JSI10Kac_6	102.33	93.143			0.73412	0.87452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73412	0.87452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77085000	44446000	32638000	0	0	0	77085000	44446000	32638000	0	0	0	0	0	0	55007	3698	51813	333696	450018	450018			1	
VLAVNQENEHLMEDYEK	1	Unmodified	2059.9521	0.95207011	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.676	3	9	5							2	3	7	5	53.306	52.706	2;3	7.9885E-38	45525	160511_QHF_FH_JSI11i_2	244.46	215.7			1.1567	1.1525	50.472	17	9	Median	0.50279	0.42768	10.981	2	0	Median	0.57161	0.69155	26.223	3	2	Plateau	1.6765	1.7205	28.78	7	6	Median	1.0367	1.13	26.216	5	1	Median	5551900000	2590700000	2961200000	651500000	409190000	242310000	819230000	553090000	266150000	2796800000	1057500000	1739300000	1284300000	570930000	713410000	55008	361	51814	333697;333698;333699;333700;333701;333702;333703;333704;333705;333706;333707;333708;333709;333710;333711;333712;333713	450019;450020;450021;450022;450023;450024;450025;450026;450027;450028;450029;450030;450031;450032;450033;450034;450035;450036;450037;450038;450039;450040;450041;450042;450043;450044;450045	450037			27	
VLAVNQENEHLMEDYEK	1	Oxidation (M)	2075.947	0.94698474	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	41.065	40.601	3	0.0029198	35730	160511_QHF_FH_JSI10i_2	51.147	42.438			1.2268	1.2743	61.398	4	4	Median	NaN	NaN	NaN	0	0	Median	0.39019	0.48567	NaN	1	1	Median	1.7978	1.8507	NaN	1	1	Median	1.2268	1.2743	38.551	2	2	Median	153890000	83213000	70675000	0	0	0	27723000	23969000	3754500	23022000	4041100	18981000	103140000	55203000	47940000	55009	361	51814	333714;333715;333716;333717	450046;450047;450048;450049	450047		142	4	
VLAVNQENEQLMEDYEK	1	Unmodified	2050.9517	0.95173576	1021	P12814	ACTN1	Alpha-actinin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	63.855	63.23	2;3	4.0235E-40	57461	160511_QHF_FH_JSI12i_1	235.25	225.71			0.79952	0.87217	31.962	8	0	Median	0.65627	0.54144	1.6527	2	0	Median	0.62831	0.73343	4.2664	2	0	Median	1.1981	1.1626	3.7985	2	0	Median	0.98291	1.024	2.4656	2	0	Median	1209800000	693150000	516600000	402450000	246430000	156020000	240320000	149400000	90921000	331240000	168750000	162490000	235740000	128580000	107170000	55010	1021	51815	333718;333719;333720;333721;333722;333723;333724;333725	450050;450051;450052;450053;450054;450055;450056;450057;450058;450059;450060;450061;450062	450054			13	
VLAVTAIR	0	Unmodified	841.53854	0.53853756	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.33	6.6	2	4	2				2	4	4	3	5	6	4	47.182	41.325	2	0.0012584	36106	160511_QHF_FH_JSI11i_3	91.906	20.994			0.94767	0.9928	9.4146	18	0	Median	1.1847	1.011	3.0755	3	0	Median	0.77992	0.93127	7.7005	5	0	Median	1.0226	1.004	11.756	6	0	Median	0.96144	1.0465	9.0018	4	0	Median	3986600000	1965200000	2021400000	572540000	257980000	314560000	653770000	370000000	283770000	1533900000	758220000	775680000	1226400000	578970000	647390000	55011	1205	51816	333726;333727;333728;333729;333730;333731;333732;333733;333734;333735;333736;333737;333738;333739;333740;333741;333742;333743	450063;450064;450065;450066;450067;450068;450069;450070;450071;450072;450073;450074;450075;450076;450077;450078;450079;450080;450081;450082	450063			20	
VLCELADLQDK	1	Unmodified	1302.649	0.64895222	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	55.452	54.796	2	0.00016793	49925	160511_QHF_FH_JSI12i_1	92.538	64.33			0.60609	0.74337	55.019	3	2	Median	NaN	NaN	NaN	0	0	Median	0.54033	0.65762	17.332	2	1	Median	NaN	NaN	NaN	0	0	Median	1.5699	1.6651	NaN	1	1	Median	672670000	381600000	291070000	0	0	0	343140000	227090000	116060000	0	0	0	329520000	154510000	175010000	55012	1132	51817	333744;333745;333746	450083;450084;450085	450083			3	
VLCGGDIYVPEDPK	1	Unmodified	1560.7494	0.74939455	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	57.092	56.492	2	0.00020415	51158	160511_QHF_FH_JSI11i_1	90.05	73.025			1.3102	1.1487	27.811	5	3	Median	1.4152	1.1487	NaN	1	0	Median	1.048	1.2202	31.179	2	2	Median	0.97222	0.95468	NaN	1	0	Median	1.7687	1.7965	NaN	1	1	Median	744750000	304620000	440130000	82234000	30268000	51966000	293860000	117550000	176310000	184020000	94854000	89161000	184640000	61944000	122690000	55013	1645	51818	333747;333748;333749;333750;333751	450086;450087;450088;450089;450090;450091;450092	450087			7	
VLCLAVAVGHVK	1	Unmodified	1264.7326	0.73256269	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			2						2		1		3	61.719	57.092	2;3	1.323E-05	48766	160511_QHF_FH_JSI12i_3	107.83	100.46			2.0707	2.1217	50.868	4	4	Median	NaN	NaN	NaN	0	0	Median	2.5783	3.0922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.4601	2.4924	48.415	3	3	Plateau	360530000	117810000	242710000	0	0	0	42542000	10370000	32172000	0	0	0	317980000	107440000	210540000	55014	2036	51819	333752;333753;333754;333755	450093;450094;450095;450096	450093			4	
VLCLWRRNGSETQLNKFYTK	2	Acetyl (K)	2554.3115	0.31146151	3810	Q8WXG6	MADD	MAP kinase-activating death domain protein	yes	yes	1	0	0	3	By MS/MS				16	0									1	1				86.217	77.605	3	0.059009	42818	160513_QHF_FH_JSI9Kac_6	31.818	6.62			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59179000	0	59179000	59179000	0	59179000	0	0	0	0	0	0	0	0	0	55015	3810	51820	333756	450097	450097			1	
VLCPVIGKLLHKR	2	Acetyl (K)	1573.949	0.94903783	713	O95671	ASMTL	N-acetylserotonin O-methyltransferase-like protein	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			108.11	102.39	2	0.059855	60600	160513_QHF_FH_JSI10Kac_6	44.203	19.349			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55016	713	51821	333757	450098	450098			1	
VLCQGFAFDIPGFYDSGLLQGK	1	Unmodified	2431.1882	0.18821806	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	102.08	101.94	3	0.00018749	89629	160511_QHF_FH_JSI11i_2	63.869	55.876			1.1549	1.1481	27.423	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9756	0.98312	21.939	2	0	Median	1.3324	1.4545	NaN	1	0	Median	457830000	244950000	212880000	0	0	0	0	0	0	377450000	210370000	167080000	80380000	34577000	45803000	55017	1090	51822	333758;333759;333760	450099;450100	450100			1	
VLCQGLK	1	Unmodified	816.45276	0.45275902	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	18.299	17.612	2	0.049359	14396	160511_QHF_FH_JSI12i_2	43	27.561			0.85006	1.0514	43.895	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85006	1.0514	NaN	1	0	Median	0.59686	0.59741	NaN	1	0	Median	1.2622	1.4179	NaN	1	0	Median	413830000	217110000	196720000	0	0	0	81195000	48518000	32678000	202320000	113050000	89276000	130310000	55547000	74764000	55018	1029	51823	333761;333762;333763	450101;450102	450101			2	
VLDAIIQEK	1	Unmodified	1027.5914	0.59136099	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS				1.67	0.471	1	2								3				45.375	44.265	2	0.0031591	38699	160511_QHF_FH_JSI9i_2	71.614	36.169			1.1713	0.99382	42.902	3	2	Median	1.1713	0.99382	42.902	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	271580000	149340000	122240000	271580000	149340000	122240000	0	0	0	0	0	0	0	0	0	55019	4989	51824	333764;333765;333766	450103;450104;450105	450104			3	
VLDALVFHFLGFR	0	Unmodified	1532.8504	0.85036964	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	3	3	5	3	97.667	91.497	2;3	2.0374E-20	51609	160513_QHF_FH_JSI10Kac_6	149.23	135.2			0.98798	1.0686	18.875	14	2	Median	1.3084	1.1433	19.231	3	0	Plateau	0.96795	1.1502	9.3774	3	0	Median	1.0675	1.0354	15.805	5	2	Median	0.84793	0.87687	2.3511	3	0	Median	17813000000	8862400000	8950600000	2579000000	1119000000	1460000000	2791600000	1438200000	1353400000	9275200000	4610900000	4664300000	3167100000	1694200000	1472900000	55020	2479	51825	333767;333768;333769;333770;333771;333772;333773;333774;333775;333776;333777;333778;333779;333780	450106;450107;450108;450109;450110;450111;450112;450113;450114;450115;450116;450117;450118;450119;450120;450121;450122	450119			17	
VLDAMLPYLINYYGNPHSR	0	Unmodified	2235.1147	0.11465919	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.89	6.45		4	2						3	2	1	3	3	97.261	94.158	3	4.116E-14	89743	160511_QHF_FH_JSI11i_3	149.47	144.21			1.0894	1.0225	19.138	9	2	Median	1.1333	0.96946	7.5272	2	1	Median	0.71746	0.89343	NaN	1	0	Median	1.184	1.1266	25.009	3	1	Median	0.94331	1.0609	22.408	3	0	Median	1914900000	936270000	978650000	323060000	153440000	169620000	169230000	99402000	69828000	876570000	413470000	463090000	546070000	269960000	276110000	55021	5712	51826	333781;333782;333783;333784;333785;333786;333787;333788;333789	450123;450124;450125;450126;450127;450128;450129;450130;450131;450132;450133	450123			11	
VLDAMLPYLINYYGNPHSR	0	Oxidation (M)	2251.1096	0.10957381	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	1	0	By MS/MS			By MS/MS	16	0									2	1			1	84.13	75.1	3	4.5021E-09	41131	160513_QHF_FH_JSI9Kac_6	104.89	91.163			1.312	1.2525	10.224	2	1	Median	1.5723	1.3464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0948	1.1651	NaN	1	1	Median	101540000	39256000	62289000	55679000	21651000	34028000	0	0	0	0	0	0	45866000	17605000	28261000	55022	5712	51826	333790;333791	450134;450135	450134		2738	2	
VLDASWYSPGTR	0	Unmodified	1350.6568	0.65681479	2760	Q16762	TST	Thiosulfate sulfurtransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	54.904	53.945	2	2.4922E-05	46700	160511_QHF_FH_JSI11i_2	109.42	102.52			0.85077	0.94229	60.462	4	1	Median	0.84786	0.72341	NaN	1	1	Median	0.75775	0.93678	NaN	1	0	Median	2.733	2.8171	NaN	1	0	Median	0.8537	0.94784	NaN	1	0	Median	665540000	287340000	378200000	155840000	74605000	81230000	181210000	102190000	79023000	185950000	37199000	148750000	142540000	73349000	69192000	55023	2760	51827	333792;333793;333794;333795;333796	450136;450137;450138;450139;450140;450141	450138			6	
VLDDGELLVQQTK	1	Unmodified	1456.7773	0.77732386	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	3	3	2	55.313	54.706	2;3	9.0886E-07	48527	160511_QHF_FH_JSI9i_1	128.88	113.31			1.2034	1.2441	24.979	10	6	Median	1.1636	0.94124	40.897	2	1	Median	0.94332	1.1001	27.133	3	2	Plateau	0.91901	0.91468	23.888	3	2	Plateau	1.1573	1.2116	19.574	2	1	Median	1042500000	468850000	573600000	166740000	71823000	94915000	346520000	165610000	180920000	304000000	143690000	160300000	225190000	87725000	137470000	55024	1586	51828	333797;333798;333799;333800;333801;333802;333803;333804;333805;333806;333807	450142;450143;450144;450145;450146;450147;450148;450149;450150;450151;450152;450153;450154;450155	450152			14	
VLDDMEGNQWVLGK	1	Unmodified	1602.7712	0.77119262	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		70.751	70.385	2	0.00018307	63998	160511_QHF_FH_JSI11i_1	108.7	83.075			0.31664	0.30321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31664	0.30321	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20428000	16647000	3781300	0	0	0	0	0	0	20428000	16647000	3781300	0	0	0	55025	3379	51829	333808	450156;450157	450157			2	
VLDELKHYYHGFR	1	Acetyl (K)	1717.8576	0.85763986	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.014	60.5	4	3.6226E-05	32756	160513_QHF_FH_JSI11Kac_6	97.86	86.092			0.1952	0.18855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1952	0.18855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18951000	15761000	3189600	0	0	0	0	0	0	18951000	15761000	3189600	0	0	0	55026	655	51830	333809	450158	450158	326		1	
VLDELTLAR	0	Unmodified	1028.5866	0.58660996	65	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__A2A4G1	KRT17;KRT14;KRT15	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	52.98	52.071	2	0.00049069	45635	160511_QHF_FH_JSI9i_2	79.713	53.773		+	0.69477	0.66187	76.218	5	0	Median	0.69477	0.604	NaN	1	0	Median	0.54403	0.66187	NaN	1	0	Median	0.89498	0.90553	NaN	1	0	Median	0.38218	0.41794	137.54	2	0	Median	1847400000	1182800000	664590000	273270000	142500000	130770000	245530000	143950000	101580000	329630000	152790000	176840000	999010000	743610000	255400000	55027	65	51831	333810;333811;333812;333813;333814	450159;450160;450161;450162;450163;450164;450165	450161			7	
VLDELTLTK	1	Unmodified	1030.591	0.59102664	56	P13645;CON__P13645	KRT10	Keratin, type I cytoskeletal 10	yes	no	0	0	0	0	By MS/MS				1	0	1									1				53.008	51.819	2	0.035364	46185	160511_QHF_FH_JSI9i_1	39.01	29.617		+	0.54824	0.45378	NaN	1	0	Median	0.54824	0.45378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76201000	51028000	25173000	76201000	51028000	25173000	0	0	0	0	0	0	0	0	0	55028	56	51832	333815	450166	450166			1	
VLDFEHFLPMLQTVAK	1	Oxidation (M)	1902.9914	0.99135615	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	101.22	101.13	3	5.263E-06	90183	160511_QHF_FH_JSI11i_3	115.31	92.304			0.92423	1.0074	29.732	7	0	Median	0.99413	0.81973	27.597	2	0	Median	0.96844	1.1561	19.47	2	0	Median	0.61929	0.58184	NaN	1	0	Median	1.0483	1.1079	9.5367	2	0	Median	2887100000	1565200000	1321900000	280370000	136570000	143800000	463290000	226550000	236740000	945990000	583130000	362860000	1197400000	618940000	578470000	55029	1915	51833	333816;333817;333818;333819;333820;333821;333822	450167;450168;450169;450170;450171;450172;450173;450174;450175;450176;450177	450167		1570	11	
VLDFEHFLPMLQTVAK	1	Unmodified	1886.9964	0.99644153	1915	P60660	MYL6	Myosin light polypeptide 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.06	6.34		5	7						6	4	4	5	5	100.32	97.35	2;3	1.5816E-14	90950	160511_QHF_FH_JSI11i_3	203.93	170.52			0.87376	0.85454	41.623	18	8	Median	0.89672	0.72746	26.167	4	2	Median	0.63077	0.72006	66.572	4	1	Median	0.89645	0.85498	45.393	5	3	Median	0.94007	1.0098	21.254	5	2	Median	21747000000	13474000000	8273400000	2638700000	1449800000	1188900000	5843300000	4580200000	1263200000	5783300000	3415100000	2368200000	7482200000	4029100000	3453200000	55030	1915	51833	333823;333824;333825;333826;333827;333828;333829;333830;333831;333832;333833;333834;333835;333836;333837;333838;333839;333840	450178;450179;450180;450181;450182;450183;450184;450185;450186;450187;450188;450189;450190;450191;450192;450193;450194;450195;450196	450178			18	
VLDFHNLPDGITK	1	Unmodified	1467.7722	0.7721789	1183	P20908	COL5A1	Collagen alpha-1(V) chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	67.91	67.19	3	0.00052138	57958	160511_QHF_FH_JSI12i_2	57.267	36.016			0.99653	1.0145	38.121	5	2	Median	1.8414	1.611	NaN	1	1	Median	0.72757	0.8914	NaN	1	0	Median	1.541	1.4908	54.558	2	1	Median	0.93051	1.0145	NaN	1	0	Median	145390000	71223000	74164000	18685000	9071100	9614400	27320000	15123000	12198000	61103000	28027000	33076000	38278000	19003000	19275000	55031	1183	51834	333841;333842;333843;333844;333845	450197;450198;450199;450200;450201;450202;450203	450199			7	
VLDGLHNELQTIGFQIETIGK	1	Unmodified	2324.2376	0.23761109	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	101.09	100.95	3	4.6133E-18	88644	160511_QHF_FH_JSI11i_2	144.92	140.16			0.80837	0.82542	8.5669	3	0	Median	0.86376	0.75885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80837	0.82542	NaN	1	0	Median	0.80673	0.90067	NaN	1	0	Median	528970000	277530000	251440000	131000000	66245000	64753000	0	0	0	229000000	118390000	110610000	168980000	92903000	76073000	55032	440	51835	333846;333847;333848	450204;450205;450206;450207;450208	450207			5	
VLDHAMIGPEGTDNCHK	1	Unmodified	1892.8509	0.85091628	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	27.997	27.952	4	0.0137	23402	160511_QHF_FH_JSI12i_3	39.753	35.285			1.0376	1.0609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0376	1.0609	NaN	1	0	Median	46467000	22411000	24056000	0	0	0	0	0	0	0	0	0	46467000	22411000	24056000	55033	3817	51836	333849	450209	450209			0	
VLDIIATINK	1	Unmodified	1098.6649	0.66486028	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	1	2	72.565	71.626	2	0.00084814	61881	160511_QHF_FH_JSI12i_2	82.645	40.046			1.4951	1.6734	70.916	6	6	Median	1.3224	1.1472	76.895	2	2	Median	1.3038	1.6196	NaN	1	1	Median	1.7145	1.7289	NaN	1	1	Median	0.97255	1.0977	130.62	2	2	Median	311850000	154360000	157490000	69962000	34785000	35177000	48547000	20921000	27626000	71469000	34757000	36712000	121870000	63896000	57972000	55034	874	51837	333850;333851;333852;333853;333854;333855	450210;450211;450212;450213;450214;450215	450211			6	
VLDIIYQPQAIFR	0	Unmodified	1574.8821	0.8820637	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	96.598	96.261	2	4.9319E-05	84475	160511_QHF_FH_JSI11i_2	111.91	97.748			0.93712	1.0233	19.663	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1055	1.1759	NaN	1	0	Median	0.79441	0.89047	NaN	1	0	Median	72688000	35788000	36901000	0	0	0	0	0	0	38347000	17968000	20379000	34341000	17820000	16521000	55035	5054	51838	333856;333857	450216;450217	450217			2	
VLDILKK	2	Unmodified	827.54804	0.54803961	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.496		7	9							3	4	4	5	36.986	36.205	2;3	0.0029888	30557	160511_QHF_FH_JSI12i_3	68.915	8.155			0.29667	0.3082	54.247	9	9	Median	0.40939	0.34036	42.416	2	2	Median	0.37173	0.43917	33.016	2	2	Median	0.29304	0.29216	113.47	2	2	Median	0.28451	0.28976	39.078	3	3	Median	1114600000	702990000	411590000	116700000	60330000	56371000	179720000	108560000	71165000	237240000	176310000	60931000	580920000	357790000	223130000	55036	5227	51839	333858;333859;333860;333861;333862;333863;333864;333865;333866;333867;333868;333869;333870;333871;333872;333873	450218;450219;450220;450221;450222;450223;450224;450225;450226;450227;450228;450229;450230;450231;450232;450233	450230			16	
VLDIMPLTLHACMHQK	1	Unmodified	1905.9627	0.96271534	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.603	70.305	4	9.818E-05	60930	160511_QHF_FH_JSI12i_3	68.283	62.741			1.3375	1.3619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3375	1.3619	NaN	1	0	Median	57260000	24174000	33086000	0	0	0	0	0	0	0	0	0	57260000	24174000	33086000	55037	4603	51840	333874	450234	450234			1	
VLDIPGQDSETVFDIQNDR	0	Unmodified	2160.0335	0.033491558	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	83.854	83.381	2;3	1.4635E-16	76059	160511_QHF_FH_JSI11i_1	124.7	110.45			1.1557	1.1312	19.252	5	2	Median	1.2824	1.0649	NaN	1	0	Median	0.9729	1.1369	NaN	1	0	Median	1.1557	1.1303	NaN	1	1	Median	1.3424	1.3901	29.149	2	1	Median	268340000	117380000	150960000	45575000	16644000	28931000	87692000	41636000	46056000	57336000	25349000	31987000	77739000	33754000	43985000	55038	2732	51841	333875;333876;333877;333878;333879;333880;333881;333882	450235;450236;450237;450238;450239;450240	450236			6	
VLDIPGQDSETVFDIQNDRNSILPK	1	Unmodified	2812.4243	0.42430225	2732	Q16513	PKN2	Serine/threonine-protein kinase N2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	1	2	92.183	92.018	3	4.5497E-10	79839	160511_QHF_FH_JSI12i_3	103.27	94.536			0.6772	0.79804	24.318	5	4	Median	1.2059	1.0207	NaN	1	1	Median	0.65147	0.79804	NaN	1	1	Median	0.93545	0.86727	NaN	1	0	Median	0.61003	0.60727	17.092	2	2	Median	218070000	117390000	100690000	29450000	10439000	19011000	31651000	21601000	10051000	78114000	38325000	39790000	78857000	47021000	31836000	55039	2732	51842	333883;333884;333885;333886;333887	450241;450242;450243;450244;450245;450246;450247;450248;450249	450249			9	
VLDLAEQV	0	Unmodified	885.48075	0.48074791	4119	Q96I25	RBM17	Splicing factor 45	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	63.802	63.177	2	0.05083	57488	160511_QHF_FH_JSI12i_1	37.094	30.991			1.0407	0.98299	6.9279	4	0	Median	1.1619	0.96224	NaN	1	0	Median	0.85328	1.0042	NaN	1	0	Median	1.005	0.95567	NaN	1	0	Median	1.0776	1.1106	NaN	1	0	Median	211250000	96474000	114770000	62933000	25314000	37619000	52459000	27403000	25056000	49008000	21923000	27085000	46845000	21835000	25011000	55040	4119	51843	333888;333889;333890;333891	450250	450250			1	
VLDLDLFR	0	Unmodified	989.55458	0.55458155	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	85.248	84.759	2	2.1625E-07	75420	160511_QHF_FH_JSI10i_2	154.35	101.67			0.84584	0.88884	10.847	6	0	Median	1.2147	1.0316	NaN	1	0	Median	0.72344	0.87882	NaN	1	0	Median	0.88314	0.87525	3.7827	2	0	Median	0.78059	0.81923	14.772	2	0	Median	596090000	299290000	296810000	91605000	36311000	55294000	140410000	80568000	59840000	191430000	92038000	99390000	172650000	90372000	82281000	55041	1667	51844	333892;333893;333894;333895;333896;333897	450251;450252;450253;450254;450255;450256;450257;450258	450258			8	
VLDLDLFRVDK	1	Unmodified	1331.7449	0.74490152	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	83.828	83.1	3	0.020711	72064	160511_QHF_FH_JSI12i_2	29.807	21.294			1.2055	1.1295	23.528	4	0	Median	1.2601	1.1048	NaN	1	0	Median	1.4682	1.7858	NaN	1	0	Median	1.1533	1.0954	NaN	1	0	Median	1.0718	1.1548	NaN	1	0	Median	106350000	54175000	52177000	30409000	16020000	14389000	26820000	11384000	15436000	16892000	7572300	9319900	32231000	19198000	13032000	55042	1667	51845	333898;333899;333900;333901	450259;450260;450261;450262	450259			4	
VLDLELK	1	Unmodified	828.49567	0.49566969	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	2	3	55.63	54.887	2	0.0068663	48498	160511_QHF_FH_JSI10i_2	89.55	18.637			0.98763	0.9616	12.04	9	0	Median	1.0464	0.87538	3.5817	2	0	Median	0.79861	0.95831	0.48379	2	0	Median	1.2074	1.2089	1.0277	2	0	Median	0.96146	1.0223	4.2844	3	0	Median	2587400000	1225000000	1362400000	428580000	195830000	232750000	576240000	324330000	251910000	764760000	329330000	435430000	817850000	375530000	442320000	55043	805	51846	333902;333903;333904;333905;333906;333907;333908;333909;333910	450263;450264;450265;450266;450267;450268;450269;450270;450271;450272	450272			10	
VLDLGSPQLAMHSIR	0	Unmodified	1635.8767	0.87666075	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	2	2	3	68.014	67.304	3	7.3261E-06	59798	160511_QHF_FH_JSI11i_3	122.12	104.9			1.315	1.3182	35.858	8	3	Median	1.2644	1.0611	NaN	1	0	Median	1.5569	1.8843	57.177	2	1	Median	1.2697	1.2325	21.281	2	0	Median	1.3677	1.3816	34.401	3	2	Median	687490000	317500000	369990000	61921000	34705000	27216000	84617000	38553000	46064000	218750000	100140000	118610000	322200000	144100000	178100000	55044	5393	51847	333911;333912;333913;333914;333915;333916;333917;333918	450273;450274;450275;450276;450277;450278;450279;450280;450281;450282;450283;450284	450274			12	
VLDLQQIK	1	Unmodified	955.57023	0.57023162	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	48.872	48.001	2	0.0055642	42333	160511_QHF_FH_JSI10i_2	65.252	29.758			1.0386	0.98305	14.419	5	1	Median	1.0753	0.91268	NaN	1	0	Median	0.85453	1.0434	25.83	2	1	Median	1.0386	1.0701	NaN	1	0	Median	0.85872	0.98305	NaN	1	0	Median	1565100000	778910000	786210000	245290000	101240000	144050000	584310000	316610000	267700000	422850000	200780000	222070000	312670000	160280000	152390000	55045	5441	51848	333919;333920;333921;333922;333923	450285;450286;450287;450288;450289;450290;450291;450292	450292			8	
VLDLVEVLVTK	1	Unmodified	1226.7486	0.74858991	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	6.32		2							5	1	2	1	3	93.832	88.208	2	7.3026E-08	48128	160513_QHF_FH_JSI10Kac_6	118.4	96.317			0.90213	0.99474	52.436	7	5	Median	1.3164	1.1283	NaN	1	1	Median	0.90815	1.075	97.845	2	2	Median	0.90213	0.9017	NaN	1	0	Median	0.86178	0.99474	57.556	3	2	Median	633900000	337780000	296120000	39752000	14086000	25666000	115560000	65367000	50195000	240230000	119900000	120330000	238350000	138430000	99925000	55046	4361	51849	333924;333925;333926;333927;333928;333929;333930	450293;450294;450295;450296;450297;450298;450299;450300	450300			8	
VLDNAIETEK	1	Unmodified	1130.5819	0.58191851	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				28.169	26.901	2	0.0023596	23411	160511_QHF_FH_JSI9i_1	60.342	39.472			0.84716	0.69467	NaN	1	0	Median	0.84716	0.69467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	106850000	49738000	57116000	106850000	49738000	57116000	0	0	0	0	0	0	0	0	0	55047	2162	51850	333931	450301	450301			1	
VLDNYLTSPLPEEVDETSAEDEGVSQR	0	Unmodified	2991.3833	0.38328487	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.661	81.192	3	1.9888E-14	73773	160511_QHF_FH_JSI10i_1	93.546	90.613			1.0124	1.075	18.342	4	0	Median	0.92232	0.78384	NaN	1	0	Median	0.89809	1.0574	NaN	1	0	Median	1.1113	1.0929	NaN	1	0	Median	1.1839	1.1966	NaN	1	0	Median	646450000	339360000	307100000	27756000	19663000	8093300	255300000	141890000	113410000	182180000	101460000	80727000	181220000	76348000	104870000	55048	119	51851	333932;333933;333934;333935	450302;450303;450304;450305;450306	450305			4	
VLDNYLTSPLPEEVDETSAEDEGVSQRK	1	Unmodified	3119.4782	0.47824789	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.26	0.559	27	5	2							9	6	10	9	75.188	74.614	3;4	1.5825E-113	66911	160511_QHF_FH_JSI10i_1	254.55	218.29			1.0411	1.023	19.294	31	9	Plateau	1.2085	0.98201	13.147	9	2	Median	0.75308	0.88782	18.903	5	1	Linear	1.0602	1.0223	15.923	9	4	Median	0.99769	1.0694	29.3	8	2	Median	4584500000	2344900000	2239600000	667260000	307060000	360210000	1156900000	645080000	511840000	1177600000	582390000	595170000	1582800000	810420000	772370000	55049	119	51852	333936;333937;333938;333939;333940;333941;333942;333943;333944;333945;333946;333947;333948;333949;333950;333951;333952;333953;333954;333955;333956;333957;333958;333959;333960;333961;333962;333963;333964;333965;333966;333967;333968;333969	450307;450308;450309;450310;450311;450312;450313;450314;450315;450316;450317;450318;450319;450320;450321;450322;450323;450324;450325;450326;450327;450328;450329;450330;450331;450332;450333;450334;450335;450336;450337;450338;450339;450340;450341;450342;450343;450344;450345;450346;450347;450348;450349;450350;450351;450352;450353;450354;450355;450356;450357;450358;450359;450360;450361;450362;450363;450364;450365;450366;450367;450368;450369;450370;450371;450372;450373;450374;450375;450376;450377;450378;450379;450380;450381;450382;450383;450384;450385;450386;450387;450388;450389;450390;450391	450350			85	
VLDNYPMPIGHFWR	0	Unmodified	1743.8555	0.85553137	1735	P51511	MMP15	Matrix metalloproteinase-15	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			83.965	82.701	3	0.057201	67992	160511_QHF_FH_JSI9i_3	17.744	13.196			1.0896	1.0651	0.26629	2	0	Median	1.2851	1.0671	NaN	1	0	Median	0.92392	1.0631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43556000	26795000	16761000	19577000	10369000	9207200	23979000	16426000	7553300	0	0	0	0	0	0	55050	1735	51853	333970;333971	450392	450392			1	
VLDPASSDFTR	0	Unmodified	1206.5881	0.58806652	2904	Q5JTH9	RRP12	RRP12-like protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				41.946	40.897	2	0.012045	35800	160511_QHF_FH_JSI9i_2	45.368	40.058			1.248	1.073	NaN	1	0	Median	1.248	1.073	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38105000	18779000	19326000	38105000	18779000	19326000	0	0	0	0	0	0	0	0	0	55051	2904	51854	333972	450393	450393			1	
VLDPFTIK	1	Unmodified	931.53787	0.53786886	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.57	4	5	4				3	4	4	5	5	8	6	69.807	64.974	1;2	0.00012853	57004	160511_QHF_FH_JSI11i_2	126.67	0			1.0072	1.0106	19.069	23	4	Median	1.1995	0.99565	9.0142	5	0	Median	0.87057	1.0445	8.9904	5	0	Median	0.99285	1.0044	17.654	8	2	Median	1.0072	1.0967	30.375	5	2	Median	24117000000	10659000000	13458000000	4083500000	1556400000	2527100000	5797000000	2877600000	2919400000	9324800000	4179700000	5145100000	4911300000	2045200000	2866100000	55052	1322	51855	333973;333974;333975;333976;333977;333978;333979;333980;333981;333982;333983;333984;333985;333986;333987;333988;333989;333990;333991;333992;333993;333994;333995;333996	450394;450395;450396;450397;450398;450399;450400;450401;450402;450403;450404;450405;450406;450407;450408;450409;450410;450411;450412;450413;450414;450415;450416;450417;450418;450419;450420;450421;450422;450423;450424;450425;450426;450427;450428;450429;450430;450431;450432;450433;450434;450435;450436;450437	450424			43	
VLDPFTIKPLDR	1	Unmodified	1412.8028	0.80275075	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	74.438	73.61	3	0.00033626	63591	160511_QHF_FH_JSI12i_2	56.122	48.398			1.048	0.98727	27.859	8	0	Median	1.2943	1.0797	7.9535	2	0	Median	0.68341	0.78613	4.9366	2	0	Median	0.83896	0.82132	21.321	2	0	Median	1.3341	1.4091	22.122	2	0	Median	1217800000	526380000	691400000	181850000	90443000	91409000	184240000	108820000	75421000	415280000	194510000	220770000	436400000	132600000	303800000	55053	1322	51856	333997;333998;333999;334000;334001;334002;334003;334004	450438;450439;450440;450441;450442;450443;450444;450445;450446;450447;450448;450449;450450	450439			13	
VLDPFTIKPLDR	1	Acetyl (K)	1454.8133	0.81331543	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		87.377	76.877	2	7.0813E-09	40313	160513_QHF_FH_JSI11Kac_5	118.4	88.93			0.24119	0.23935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24119	0.23935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15768000	12762000	3006000	0	0	0	0	0	0	15768000	12762000	3006000	0	0	0	55054	1322	51856	334005	450451	450451	1255		1	
VLDPFTIKPLDRK	2	Unmodified	1540.8977	0.89771377	1322	P29401	TKT	Transketolase	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							3	2	1	1	63.913	62.954	3;4	0.00021629	51773	160511_QHF_FH_JSI9i_3	81.494	67.588			0.72522	0.68843	28.686	5	5	Median	0.61376	0.49816	4.1795	2	2	Median	0.79579	0.92894	NaN	1	1	Median	0.72522	0.68843	NaN	1	1	Median	0.81622	0.82715	NaN	1	1	Median	840280000	435770000	404510000	233620000	149730000	83881000	185670000	87796000	97872000	251540000	135870000	115680000	169450000	62371000	107080000	55055	1322	51857	334006;334007;334008;334009;334010;334011;334012	450452;450453;450454;450455;450456;450457;450458;450459;450460	450457			9	
VLDPFTIKPLDRK	2	Acetyl (K)	1582.9083	0.90827845	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	80.378	70.999	3	5.7845E-08	38958	160513_QHF_FH_JSI11Kac_6	112.15	100.7			0.25462	0.24419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25462	0.24419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	121050000	100720000	20329000	0	0	0	0	0	0	110390000	90058000	20329000	10661000	10661000	0	55056	1322	51857	334013;334014	450461;450462;450463	450462	1255		3	
VLDPNTVFALVNYISFK	1	Unmodified	1939.0455	0.045500215	61	CON__P34955			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	4.4		1							8	2	2	3	2	100.26	92.753	2;3	1.2519E-96	49855	160513_QHF_FH_JSI12Kac_6	279.29	217.92		+	0.95285	1.0058	27.777	9	0	Median	1.3082	1.1211	2.5972	2	0	Median	0.89558	1.0716	8.8191	2	0	Median	1.0528	1.0053	17.428	3	0	Plateau	0.55441	0.58031	7.6656	2	0	Median	4961600000	2671600000	2289900000	1071000000	505790000	565210000	1072900000	575100000	497780000	1164800000	582620000	582170000	1652900000	1008100000	644780000	55057	61	51858	334015;334016;334017;334018;334019;334020;334021;334022;334023	450464;450465;450466;450467;450468;450469;450470;450471;450472;450473;450474;450475	450471			12	
VLDQFQVMPLQFSK	1	Unmodified	1678.8753	0.87526376	4198	Q96PQ0	SORCS2	VPS10 domain-containing receptor SorCS2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		83.582	83.326	3	0.052456	75514	160511_QHF_FH_JSI10i_1	19.323	6.1867			1.3032	1.3444	4.7561	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2429	1.3904	NaN	1	0	Median	1.3664	1.3	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	55049000	29398000	25651000	0	0	0	33200000	17631000	15569000	21849000	11767000	10082000	0	0	0	55058	4198	51859	334024;334025	450476	450476			1	
VLDQIEFLDTK	1	Unmodified	1319.6973	0.69728262	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	72.973	72.569	2	0.0012189	65773	160511_QHF_FH_JSI10i_1	65.241	35.768			0.83381	0.79856	21.028	5	4	Median	NaN	NaN	NaN	0	0	Median	0.6699	0.79856	NaN	1	0	Median	1.0134	0.96964	27.504	2	2	Median	0.87884	0.90337	27.578	2	2	Median	207520000	107100000	100420000	0	0	0	43923000	27448000	16475000	95307000	48546000	46761000	68292000	31110000	37182000	55059	942	51860	334026;334027;334028;334029;334030	450477;450478;450479;450480;450481;450482	450481			6	
VLDQKEHR	1	Acetyl (K)	1065.5567	0.55670682	4308	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								3				2	1	11.232	1.8277	2;3	0.010869	4342	160513_QHF_FH_JSI11Kac_5	56.432	21.163			0.045202	0.047185	34.152	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.037277	0.037062	NaN	1	1	Median	0.054811	0.060073	NaN	1	1	Median	23093000	22416000	677030	0	0	0	0	0	0	21397000	20884000	512870	1695700	1531600	164160	55060	4308	51861	334031;334032;334033	450483;450484;450485	450483	3120		3	
VLDQVETELQRR	0	Unmodified	1484.7947	0.79470526	3689	Q8TB36	GDAP1	Ganglioside-induced differentiation-associated protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		39.631	39.631	3	0.044699	34759	160511_QHF_FH_JSI11i_3	27.664	18.13			1.0752	1.014	94.719	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0752	1.014	94.719	2	2	Median	NaN	NaN	NaN	0	0	Median	50172000	23177000	26994000	0	0	0	0	0	0	50172000	23177000	26994000	0	0	0	55061	3689	51862	334034;334035	450486;450487	450486			2	
VLDSGAPIK	1	Unmodified	898.51238	0.51238239	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.66	4	4	3			4	3			4	5	4	5	27.704	23.281	2	0.0002328	22143	160511_QHF_FH_JSI12i_1	84.568	41.444			0.82933	0.93361	22.104	18	3	Median	1.1602	0.96823	1.4592	4	0	Median	0.77841	0.92679	34.833	5	1	Median	0.8468	0.84653	7.4877	4	0	Median	0.81234	0.92562	26.99	5	2	Median	11468000000	5439700000	6027800000	2564800000	1265900000	1298900000	2763200000	1451000000	1312200000	2840200000	1257300000	1582800000	3299300000	1465400000	1833900000	55062	851	51863	334036;334037;334038;334039;334040;334041;334042;334043;334044;334045;334046;334047;334048;334049;334050;334051;334052;334053	450488;450489;450490;450491;450492;450493;450494;450495;450496;450497;450498;450499;450500;450501;450502;450503;450504;450505;450506;450507;450508;450509;450510;450511;450512;450513;450514;450515	450495			28	
VLDVLWELAHLPTLPSSLIQQALEEHLTILSDAYAVK	1	Unmodified	4125.2402	0.24018386	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			102.22	96.498	4	1.1549E-37	57043	160513_QHF_FH_JSI10Kac_6	149.44	136.39			0.68034	0.80106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68034	0.80106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131970000	93021000	38950000	0	0	0	131970000	93021000	38950000	0	0	0	0	0	0	55063	5468	51864	334054	450516	450516			1	
VLDVNLMGTFNVIR	0	Unmodified	1589.8599	0.85994805	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.9		7							5	3	4	3	2	95.945	92.068	2;3	3.1833E-24	48052	160513_QHF_FH_JSI10Kac_6	158.04	123.51			0.96479	0.96171	17.756	10	4	Median	1.3307	1.1408	20.292	3	3	Plateau	0.74473	0.90072	8.0504	4	1	Median	1.1764	1.1717	6.1476	2	0	Median	1.1554	1.2894	NaN	1	0	Median	1082800000	561030000	521720000	148810000	63587000	85224000	548980000	309310000	239670000	277290000	144120000	133170000	107680000	44012000	63668000	55064	4304	51865	334055;334056;334057;334058;334059;334060;334061;334062;334063;334064;334065;334066	450517;450518;450519;450520;450521;450522;450523;450524;450525;450526;450527;450528;450529	450528			13	
VLDVSDLESVTSK	1	Unmodified	1390.7191	0.71914028	3728	Q8TE77	SSH3	Protein phosphatase Slingshot homolog 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			69.637	69.379	2	0.027071	62812	160511_QHF_FH_JSI10i_1	48.513	35.16			0.36944	0.43081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.36944	0.43081	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51503000	33839000	17665000	0	0	0	51503000	33839000	17665000	0	0	0	0	0	0	55065	3728	51866	334067	450530	450530			1	
VLEAAAQAAR	0	Unmodified	998.55089	0.55089316	4895	Q9NPD3	EXOSC4	Exosome complex component RRP41	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	17.471	16.494	2	0.010542	13433	160511_QHF_FH_JSI12i_2	47.574	25.188			0.91722	1.0335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91722	1.0335	NaN	1	0	Median	93049000	44475000	48573000	0	0	0	0	0	0	0	0	0	93049000	44475000	48573000	55066	4895	51867	334068	450531	450531			1	
VLEAAVAAK	1	Unmodified	870.51747	0.51746776	2518	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			23.092	22.816	2	0.02033	19825	160511_QHF_FH_JSI10i_1	42.287	6.7936			0.65362	0.76047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65362	0.76047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154780000	80871000	73910000	0	0	0	154780000	80871000	73910000	0	0	0	0	0	0	55067	2518	51868	334069	450532	450532			1	
VLEALLPLK	1	Unmodified	994.64267	0.64266828	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.97	4	4	4				1	3	1	4	4	4	5	77.634	74.549	2	4.3969E-07	66527	160511_QHF_FH_JSI11i_2	138.9	121.51			0.9728	0.97402	46.241	16	0	Median	1.1474	0.9463	33.591	4	0	Median	0.94786	1.1458	75.172	4	0	Median	1.0009	0.99918	6.8029	4	0	Median	0.78322	0.82309	28.083	4	0	Median	5947800000	2981600000	2966100000	1048600000	480880000	567680000	1332400000	662010000	670370000	2255400000	1175200000	1080300000	1311400000	663600000	647810000	55068	1650	51869	334070;334071;334072;334073;334074;334075;334076;334077;334078;334079;334080;334081;334082;334083;334084;334085;334086	450533;450534;450535;450536;450537;450538;450539;450540;450541;450542;450543;450544;450545;450546;450547;450548;450549;450550;450551;450552;450553;450554;450555;450556;450557;450558;450559;450560;450561	450552			29	
VLEALLPLKGLEER	1	Acetyl (K)	1620.9451	0.94505789	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.7	0.471								1	2			2	1	92.088	82.351	2	5.5675E-07	44383	160513_QHF_FH_JSI12Kac_6	113.77	77.808			0.88214	0.90572	11.721	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85893	0.83368	NaN	1	0	Median	0.90597	0.98398	NaN	1	0	Median	130970000	67774000	63197000	0	0	0	0	0	0	69962000	35608000	34354000	61009000	32167000	28842000	55069	1650	51870	334087;334088;334089	450562;450563;450564	450564	1672		3	
VLEAMTER	0	Unmodified	947.47462	0.47461667	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	23.168	22.319	2	0.0016632	18462	160511_QHF_FH_JSI11i_2	86.472	23.325			1.2363	1.3191	36.479	4	0	Median	1.7797	1.5551	NaN	1	0	Median	0.54515	0.68539	NaN	1	0	Median	1.2294	1.2649	NaN	1	0	Median	1.2432	1.3756	NaN	1	0	Median	532150000	280980000	251170000	124960000	50552000	74409000	95623000	64973000	30650000	185370000	98043000	87325000	126200000	67409000	58788000	55070	432	51871	334090;334091;334092;334093	450565;450566;450567;450568	450567			4	
VLEDNKLPGAICSLTCGGADIGTAMAK	2	Unmodified	2761.3449	0.34487141	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	3	1	86.048	85.74	3	1.7781E-17	74365	160511_QHF_FH_JSI12i_3	104.96	92.282			0.94699	1.0734	26.041	5	3	Median	NaN	NaN	NaN	0	0	Median	0.94699	1.1733	NaN	1	1	Median	0.92356	0.87901	20.334	3	2	Median	1.3465	1.4003	NaN	1	0	Median	128790000	63293000	65494000	4732800	0	4732800	10170000	3511600	6658900	76301000	42481000	33820000	37583000	17301000	20282000	55071	1659	51872	334094;334095;334096;334097;334098;334099;334100	450569;450570;450571;450572;450573;450574;450575;450576	450575			8	
VLEDPAIASDESFGAVK	1	Unmodified	1746.8676	0.86759543	702	O95544	NADK	NAD kinase	yes	yes	0	0	0	0	By MS/MS				1	0	2									2				66.94	65.929	2	6.1274E-06	58583	160511_QHF_FH_JSI9i_1	110.92	88.691			1.011	0.82132	11.729	2	2	Median	1.011	0.82132	11.729	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58812000	30098000	28715000	58812000	30098000	28715000	0	0	0	0	0	0	0	0	0	55072	702	51873	334101;334102	450577;450578	450578			2	
VLEDSDLK	1	Unmodified	917.47058	0.47057715	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.18	6					4	2			3	4	2	3	24.686	19.409	2	0.0015998	18679	160511_QHF_FH_JSI12i_1	87.323	28.341			1.141	1.0787	61.406	12	5	Median	1.1494	0.94545	88.339	3	2	Median	0.73348	0.88751	72.853	4	2	Median	1.157	1.1347	1.954	2	0	Median	1.4503	1.538	59.201	3	1	Plateau	15654000000	9332900000	6320700000	5299600000	3179600000	2119900000	5274000000	3760900000	1513100000	2437500000	1158600000	1278900000	2642500000	1233800000	1408800000	55073	982	51874	334103;334104;334105;334106;334107;334108;334109;334110;334111;334112;334113;334114	450579;450580;450581;450582;450583;450584;450585;450586;450587;450588;450589;450590;450591;450592;450593;450594;450595	450581			17	
VLEDSDLKK	2	Unmodified	1045.5655	0.56554017	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.39	5.5	4	15	5				6	3		8	9	6	10	18.635	15.767	2;3	0.00033815	13237	160511_QHF_FH_JSI9i_2	103.83	70.283			0.62379	0.66062	106.98	32	29	Median	0.74826	0.61935	106.26	8	7	Median	0.33815	0.40221	116.17	9	8	Median	0.57945	0.55832	106.89	6	6	Median	1.2484	1.333	107.84	9	8	Median	6948300000	3684700000	3263600000	1373600000	679070000	694530000	1749100000	1042800000	706310000	1706500000	1024700000	681810000	2119000000	938090000	1181000000	55074	982	51875	334115;334116;334117;334118;334119;334120;334121;334122;334123;334124;334125;334126;334127;334128;334129;334130;334131;334132;334133;334134;334135;334136;334137;334138;334139;334140;334141;334142;334143;334144;334145;334146;334147	450596;450597;450598;450599;450600;450601;450602;450603;450604;450605;450606;450607;450608;450609;450610;450611;450612;450613;450614;450615;450616;450617;450618;450619;450620;450621;450622;450623;450624;450625;450626;450627	450611			32	
VLEDVTGEEFVLFMK	1	Unmodified	1754.8801	0.88007437	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.67	0.471	1	2								1	1	1		101.32	101.25	2	1.4182E-29	88941	160511_QHF_FH_JSI11i_2	184.03	144.88			0.8633	0.88047	2.4628	3	2	Plateau	1.017	0.85806	NaN	1	1	Median	0.71182	0.83817	NaN	1	1	Median	0.8633	0.88047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	344980000	196480000	148500000	92547000	55844000	36703000	88728000	54213000	34515000	163700000	86425000	77280000	0	0	0	55075	4575	51876	334148;334149;334150	450628;450629;450630	450630			3	
VLEEAEAQHLYQSILPDMVK	1	Unmodified	2312.1722	0.17223365	3352	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.137	93.741	3	6.2422E-05	82364	160511_QHF_FH_JSI11i_2	65.097	49.155			3.1603	3.1002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1603	3.1002	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48708000	16907000	31801000	0	0	0	0	0	0	48708000	16907000	31801000	0	0	0	55076	3352	51877	334151	450631	450631			1	
VLEEALLSR	0	Unmodified	1028.5866	0.58660996	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.804	47.406	2	0.0087808	40639	160511_QHF_FH_JSI12i_2	51.864	11.766			0.68222	0.73369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68222	0.73369	NaN	1	0	Median	40114000	19439000	20675000	0	0	0	0	0	0	0	0	0	40114000	19439000	20675000	55077	3869	51878	334152	450632	450632			1	
VLEEANQAINPK	1	Unmodified	1324.6987	0.69867961	3893	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.78	8	3				4	2			3	5	5	4	34.895	30.821	2;3	1.3101E-06	17884	160513_QHF_FH_JSI11Kac_3	118.18	96.671			0.95694	0.97251	38.597	15	6	Median	1.031	0.84077	91.636	2	2	Median	0.73224	0.84953	41.453	4	1	Median	1.1754	1.1462	32.725	5	2	Median	0.83455	0.87378	20.022	4	1	Linear	3732100000	1896100000	1836000000	876970000	410890000	466080000	972650000	532000000	440650000	964660000	480160000	484510000	917840000	473090000	444740000	55078	3893	51879	334153;334154;334155;334156;334157;334158;334159;334160;334161;334162;334163;334164;334165;334166;334167;334168;334169	450633;450634;450635;450636;450637;450638;450639;450640;450641;450642;450643;450644;450645;450646;450647;450648;450649;450650;450651;450652;450653;450654	450640			22	
VLEEEEQR	0	Unmodified	1030.4931	0.49310351	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.357	9.9734	2	0.00081956	7702	160511_QHF_FH_JSI10i_1	97.798	76.27			0.98848	0.98572	18.445	4	0	Median	1.0458	0.84626	NaN	1	0	Median	0.83774	0.98363	NaN	1	0	Median	1.3525	1.3158	NaN	1	0	Median	0.93431	0.98781	NaN	1	0	Median	1465000000	779380000	685610000	402090000	207210000	194880000	354660000	199370000	155300000	382450000	201110000	181340000	325790000	171700000	154090000	55079	2233	51880	334170;334171;334172;334173	450655;450656;450657;450658;450659;450660;450661	450660			7	
VLEEGSVEAR	0	Unmodified	1087.551	0.55095274	4014	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.877	19.372	2	0.0024839	16918	160511_QHF_FH_JSI12i_1	67.494	43.97			0.93276	0.9522	14.31	4	0	Median	0.93576	0.76987	NaN	1	0	Median	0.91496	1.085	NaN	1	0	Median	0.95208	0.93235	NaN	1	0	Median	0.92978	0.97248	NaN	1	0	Median	972970000	502260000	470710000	219280000	105980000	113290000	260520000	132080000	128440000	254980000	142820000	112160000	238190000	121380000	116810000	55080	4014	51881	334174;334175;334176;334177	450662;450663;450664;450665;450666;450667	450663			6	
VLEENQEHYHIVQK	1	Unmodified	1764.8795	0.87949752	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	24.192	24.176	2;3;4	4.8518E-07	20002	160511_QHF_FH_JSI12i_3	130.07	112.67			1.0821	1.1424	27.463	5	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89096	0.84358	18.545	2	0	Median	1.2759	1.2554	14.818	3	0	Median	823070000	323200000	499870000	0	0	0	0	0	0	277080000	116090000	160990000	546000000	207110000	338890000	55081	1895	51882	334178;334179;334180;334181;334182	450668;450669;450670;450671;450672;450673;450674;450675;450676;450677	450673			9	
VLEFNCR	0	Unmodified	936.44874	0.44873627	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	31.029	30.354	2	0.017438	25663	160511_QHF_FH_JSI11i_2	61.494	50.126			1.06	1.1633	29.286	4	0	Median	NaN	NaN	NaN	0	0	Median	0.77063	0.93693	NaN	1	0	Median	0.87566	0.87785	NaN	1	0	Median	1.3967	1.4989	5.2437	2	0	Median	614740000	313920000	300820000	0	0	0	115570000	62606000	52964000	244590000	135430000	109170000	254580000	115890000	138690000	55082	1205	51883	334183;334184;334185;334186	450678;450679	450678			2	
VLEGHTDFINGLVFDPK	1	Unmodified	1899.9731	0.97306355	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			83.318	82.695	3	0.051841	73541	160511_QHF_FH_JSI10i_2	19.725	2.506			0.88799	0.92641	10.834	2	0	Median	1.1391	1.0002	NaN	1	0	Median	0.69221	0.85809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112880000	59342000	53541000	45885000	20156000	25730000	66997000	39186000	27811000	0	0	0	0	0	0	55083	3657	51884	334187;334188	450680	450680			1	
VLEGLREDMLETLVPK	1	Unmodified	1840.9968	0.99683546	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	90.503	90.459	2;3	1.6271E-05	78598	160511_QHF_FH_JSI12i_3	106.3	95.961			0.86294	0.89666	13.542	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0665	0.96926	NaN	1	0	Median	0.79188	0.81714	13.133	2	1	Median	389880000	211670000	178210000	0	0	0	0	0	0	47343000	24113000	23230000	342540000	187560000	154980000	55084	3906	51885	334189;334190;334191	450681;450682;450683	450683			3	
VLEGMEVVR	0	Unmodified	1030.5481	0.54811597	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.22	5	5	2				3	4		5	5	5	4	46.936	42.441	2	3.1742E-05	38355	160511_QHF_FH_JSI11i_1	101.64	62.852			0.9285	1.0404	38.886	19	6	Median	1.2773	1.0892	67.49	5	2	Median	0.74324	0.88912	24.009	5	1	Median	1.2117	1.1832	21.088	5	3	Median	0.98298	1.0695	12.866	4	0	Median	26764000000	14367000000	12397000000	4023900000	2031400000	1992500000	5816700000	3527800000	2288900000	12494000000	6511600000	5982100000	4429800000	2296300000	2133400000	55085	1224	51886	334192;334193;334194;334195;334196;334197;334198;334199;334200;334201;334202;334203;334204;334205;334206;334207;334208;334209;334210	450684;450685;450686;450687;450688;450689;450690;450691;450692;450693;450694;450695;450696;450697;450698;450699;450700;450701;450702;450703;450704;450705;450706;450707;450708	450685			25	
VLEGMEVVR	0	Oxidation (M)	1046.543	0.54303059	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	25.046	24.325	2	0.0094991	20311	160511_QHF_FH_JSI12i_2	54.712	42.568			1.0995	1.0873	10.914	8	0	Median	1.3406	1.1137	7.8705	2	0	Median	0.80201	0.9694	7.2478	2	0	Median	1.2499	1.2302	3.8811	2	0	Median	0.9626	1.0471	9.7969	2	0	Median	1851500000	923240000	928300000	335650000	148240000	187410000	443230000	243520000	199710000	522400000	251470000	270930000	550270000	280010000	270260000	55086	1224	51886	334211;334212;334213;334214;334215;334216;334217;334218	450709;450710;450711;450712	450709		857	4	
VLEGMEVVRK	1	Unmodified	1158.6431	0.64307898	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	5.72		9	9					2	4	4	8	7	5	36.376	33.309	2;3	1.1133E-06	28001	160511_QHF_FH_JSI12i_3	120.99	82.213			1.1022	1.275	62.291	22	9	Median	0.8154	0.67908	26.397	4	1	Linear	1.2154	1.4416	44.793	7	4	Median	1.5039	1.4319	71.041	6	2	Median	0.93218	1.0439	81.134	5	2	Median	10000000000	4769100000	5231300000	882560000	436640000	445920000	1629600000	763220000	866410000	2596200000	1074500000	1521700000	4892000000	2494700000	2397300000	55087	1224	51887	334219;334220;334221;334222;334223;334224;334225;334226;334227;334228;334229;334230;334231;334232;334233;334234;334235;334236;334237;334238;334239;334240;334241;334242	450713;450714;450715;450716;450717;450718;450719;450720;450721;450722;450723;450724;450725;450726;450727;450728;450729;450730;450731;450732;450733;450734;450735;450736;450737;450738;450739;450740;450741;450742	450740			30	
VLEGMEVVRK	1	Oxidation (M)	1174.638	0.63799361	1224	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	30.53	30.232	2;3	0.0027417	28927	160511_QHF_FH_JSI11i_3	50.284	31.538			0.90928	0.93501	105.58	5	2	Median	NaN	NaN	NaN	0	0	Median	0.81024	0.92684	NaN	1	0	Median	1.6777	1.5429	38.162	2	1	Median	0.34079	0.34328	141.71	2	1	Median	1075500000	595860000	479660000	0	0	0	49013000	24139000	24874000	432840000	185670000	247160000	593670000	386050000	207630000	55088	1224	51887	334243;334244;334245;334246;334247	450743;450744;450745;450746;450747	450744		857	5	
VLEGMVEENQVNVEVTR	0	Unmodified	1943.9622	0.96224087	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0				By MS/MS	1	0	2												2	61.355	60.704	2	3.6972E-06	55239	160511_QHF_FH_JSI12i_1	114.82	97.449			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6652300	0	6652300	0	0	0	0	0	0	0	0	0	6652300	0	6652300	55089	2493	51888	334248;334249	450748;450749	450748			2	
VLEGSELELAK	1	Unmodified	1186.6445	0.64451877	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	49.913	49.235	2	0.0037276	44739	160511_QHF_FH_JSI12i_1	55.461	34.187			0.94694	0.94345	11.379	4	0	Median	1.1127	0.90028	NaN	1	0	Median	0.84536	0.98869	NaN	1	0	Median	0.8651	0.84114	NaN	1	0	Median	1.0365	1.0926	NaN	1	0	Median	757780000	386440000	371330000	175200000	83729000	91473000	170350000	96079000	74272000	208320000	109420000	98895000	203900000	97212000	106690000	55090	2587	51889	334250;334251;334252;334253	450750	450750			1	
VLEHQLLQTTK	1	Unmodified	1308.7402	0.74015049	171	O14530	TXNDC9	Thioredoxin domain-containing protein 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	3	3	7	4	32.284	29.705	2;3	1.8629E-05	24703	160511_QHF_FH_JSI12i_3	90.697	81.185			0.99032	1.0495	48.168	17	7	Median	1.2085	1.0317	41.059	3	2	Median	0.8217	1.0086	12.752	3	0	Median	1.0747	1.0546	72.756	7	5	Median	0.99323	1.0994	19.994	4	0	Median	1028200000	441660000	586520000	121390000	50981000	70406000	185660000	98989000	86675000	471380000	179170000	292210000	249750000	112520000	137230000	55091	171	51890	334254;334255;334256;334257;334258;334259;334260;334261;334262;334263;334264;334265;334266;334267;334268;334269;334270	450751;450752;450753;450754;450755;450756;450757;450758;450759;450760;450761;450762;450763;450764;450765;450766;450767;450768	450766			18	
VLEHVPLLLYILAAK	1	Unmodified	1691.0386	0.038564343	1899	P58511	SMIM11	Small integral membrane protein 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2		1	2	1	98.884	95.107	3	6.636E-18	88719	160511_QHF_FH_JSI12i_3	128.9	117.43			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55092	1899	51891	334271;334272;334273;334274	450769;450770;450771;450772	450771			4	
VLEILGK	1	Unmodified	770.49019	0.49019038	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	49.074	48.227	2	0.032748	41537	160511_QHF_FH_JSI12i_2	50.966	9.4637			1.0866	1.1529	18.064	4	1	Median	1.3939	1.1856	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9772	0.97241	25.508	2	1	Median	1.0274	1.1412	NaN	1	0	Median	695930000	336250000	359680000	168220000	69410000	98806000	0	0	0	311830000	155960000	155870000	215880000	110880000	105000000	55093	1566	51892	334275;334276;334277;334278	450773;450774;450775;450776;450777	450774			5	
VLEILHR	0	Unmodified	878.53379	0.53378653	2884	Q5GLZ8	HERC4	Probable E3 ubiquitin-protein ligase HERC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							4	3	2	1	33.171	32.336	3	0.0014699	27051	160511_QHF_FH_JSI12i_3	91.906	18.867			0.73582	0.77691	65.395	7	5	Median	0.58059	0.48979	29.885	2	2	Median	0.82448	0.94642	49.847	3	2	Median	0.30077	0.27538	NaN	1	1	Median	1.0322	1.0369	NaN	1	0	Median	324230000	181330000	142900000	59320000	28622000	30698000	107420000	58807000	48618000	69976000	47825000	22151000	87511000	46078000	41433000	55094	2884	51893	334279;334280;334281;334282;334283;334284;334285;334286;334287;334288	450778;450779;450780;450781;450782;450783;450784;450785;450786;450787;450788;450789	450789			12	
VLELAQLLDQIWR	0	Unmodified	1595.9035	0.90352742	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	103.05	102.93	2	0.01165	90752	160511_QHF_FH_JSI11i_2	69.01	35.785			0.89418	0.88473	45.215	3	0	Plateau	0.45714	0.40215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89418	0.88473	NaN	1	0	Median	0.8001	0.87528	NaN	1	0	Median	85760000	49980000	35780000	15428000	11178000	4250100	0	0	0	47757000	25429000	22329000	22575000	13373000	9201400	55095	5214	51894	334289;334290;334291	450790;450791	450791			0	
VLELDNVK	1	Unmodified	928.52295	0.52294707	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	39.415	38.704	2	0.0099826	34616	160511_QHF_FH_JSI11i_1	55.531	18.77			0.91445	0.94722	19.984	5	1	Median	1.002	0.83849	32.515	2	1	Median	0.93225	1.1063	NaN	1	0	Median	0.91445	0.87974	NaN	1	0	Median	0.89045	0.94722	NaN	1	0	Median	3437600000	1648400000	1789200000	875190000	426450000	448730000	744590000	368020000	376570000	944620000	471340000	473290000	873170000	382580000	490590000	55096	1345	51895	334292;334293;334294;334295;334296	450792;450793;450794;450795	450792			4	
VLELDPALAPVVSR	0	Unmodified	1477.8504	0.85042922	102	O00170	AIP	AH receptor-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	83.105	82.424	2	0.00011908	72499	160511_QHF_FH_JSI11i_2	103.43	53.31			1.0358	1.1005	4.6956	9	0	Median	1.3876	1.1573	4.8357	3	0	Plateau	0.93141	1.1218	2.7105	2	0	Median	1.0628	1.0514	2.0454	2	0	Median	1.0011	1.0597	2.3398	2	0	Median	686610000	337870000	348730000	149950000	70122000	79832000	172990000	90846000	82142000	206160000	98288000	107870000	157500000	78617000	78887000	55097	102	51896	334297;334298;334299;334300;334301;334302;334303;334304;334305	450796;450797;450798;450799;450800;450801;450802;450803;450804;450805;450806;450807;450808;450809;450810;450811	450809			16	
VLELEGEK	1	Unmodified	915.49131	0.49131259	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	29.369	28.832	2	0.012937	25597	160511_QHF_FH_JSI11i_1	52.786	24.363			0.923	0.93597	30.669	4	1	Median	1.3228	1.1247	NaN	1	0	Median	0.4672	0.55248	NaN	1	1	Median	0.96265	0.93725	NaN	1	0	Median	0.88498	0.9347	NaN	1	0	Median	718620000	370850000	347780000	55084000	23887000	31197000	230780000	131420000	99363000	219740000	95262000	124480000	213020000	120280000	92738000	55098	1943	51897	334306;334307;334308;334309	450812;450813;450814;450815;450816	450813			5	
VLELEPNNFEATNELRK	1	Unmodified	2015.0324	0.032369346	4753	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	65.318	64.774	3	9.9648E-07	55960	160511_QHF_FH_JSI12i_3	112.3	85.491			1.2321	1.3189	37.377	7	2	Median	1.1617	1.014	48.5	2	0	Median	1.1644	1.4039	8.8278	2	0	Median	1.8327	1.7454	53.213	2	2	Median	1.1694	1.1964	NaN	1	0	Median	1329600000	549780000	779790000	264780000	114990000	149790000	350730000	164400000	186320000	318270000	91497000	226780000	395790000	178890000	216900000	55099	4753	51898	334310;334311;334312;334313;334314;334315;334316	450817;450818;450819;450820;450821;450822;450823	450823			7	
VLELKEHK	2	Acetyl (K)	1036.5917	0.59169534	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		34.663	25.099	3	0.0030804	14827	160513_QHF_FH_JSI11Kac_5	64.04	43.17			0.23324	0.23366	42.911	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23324	0.23366	42.911	2	1	Median	NaN	NaN	NaN	0	0	Median	11569000	9415400	2153700	0	0	0	0	0	0	11569000	9415400	2153700	0	0	0	55100	230	51899	334317;334318	450824;450825	450825	123		2	
VLELLLPIR	0	Unmodified	1064.6958	0.69576648	2918	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.245	94.906	2	0.0080406	83291	160511_QHF_FH_JSI11i_2	52.716	44.297			0.9345	1.0805	17.941	4	0	Median	1.5353	1.2993	NaN	1	0	Median	0.84994	1.0793	NaN	1	0	Median	0.82487	0.83946	NaN	1	0	Median	1.0275	1.0816	NaN	1	0	Median	55427000	29133000	26294000	9816400	4282400	5534000	11944000	6300000	5644300	20281000	11494000	8787600	13385000	7056900	6328500	55101	2918	51900	334319;334320;334321;334322	450826;450827	450827			2	
VLELLMYFTK	1	Unmodified	1255.6886	0.68863219	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			94.116	86.785	2	6.309E-09	50634	160513_QHF_FH_JSI10Kac_6	123.88	73.843			0.61153	0.60657	142.34	2	2	Median	1.9488	1.6595	NaN	1	1	Median	0.1919	0.22171	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84925000	62522000	22403000	30951000	11649000	19302000	53975000	50874000	3101000	0	0	0	0	0	0	55102	3063	51901	334323;334324;334325	450828;450829;450830	450830			3	
VLELMNK	1	Unmodified	845.46807	0.46807473	3503	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.224	38.267	2	0.023455	32639	160511_QHF_FH_JSI11i_2	58.687	12.316			0.937	1.2268	37.78	4	2	Linear	1.0295	0.87498	NaN	1	0	Median	1.6033	1.9424	NaN	1	1	Median	1.516	1.5453	NaN	1	1	Median	0.89073	0.97399	NaN	1	0	Median	717810000	310210000	407600000	167310000	56751000	110560000	142150000	61973000	80172000	220940000	99562000	121380000	187410000	91926000	95489000	55103	3503	51902	334326;334327;334328;334329	450831;450832;450833	450832			3	
VLELNASDER	0	Unmodified	1144.5724	0.57241646	1428	P35249	RFC4	Replication factor C subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8	6		1					1			1	1			36.452	30.976	2	0.046166	27042	160511_QHF_FH_JSI9i_2	36.424	18.912			1.2341	1.2369	44.346	2	0	Median	1.9676	1.6925	NaN	1	0	Median	0.77403	0.904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46610000	12689000	33921000	43501000	11019000	32482000	3108500	1669500	1439000	0	0	0	0	0	0	55104	1428	51903	334330;334331	450834;450835	450835			2	
VLELTAENER	0	Unmodified	1172.6037	0.60371659	1123	P17676	CEBPB	CCAAT/enhancer-binding protein beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	34.276	33.578	2	0.0052716	28697	160511_QHF_FH_JSI11i_2	54.191	38.81			1.0569	1.1386	34.968	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4991	1.7478	NaN	1	0	Median	0.87524	0.87408	NaN	1	0	Median	1.0569	1.1386	NaN	1	1	Median	187240000	93000000	94243000	0	0	0	121800000	56997000	64804000	40874000	23175000	17699000	24568000	12828000	11739000	55105	1123	51904	334332;334333;334334	450836;450837;450838	450838			3	
VLELTGK	1	Unmodified	758.4538	0.45380487	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0	By matching	By MS/MS	By matching	By matching	1	0	4									1	1	1	1	27.444	26.862	2	0.019031	23727	160511_QHF_FH_JSI10i_1	58.981	9.6227			1.6501	1.7042	20.653	4	0	Median	1.5359	1.259	NaN	1	0	Median	1.3993	1.6826	NaN	1	0	Median	1.7727	1.726	NaN	1	0	Median	1.9794	2.0751	NaN	1	0	Median	344820000	133600000	211220000	72259000	27499000	44760000	126430000	56162000	70269000	86805000	30582000	56223000	59329000	19360000	39968000	55106	3	51905	334335;334336;334337;334338	450839	450839			1	
VLELVSITANK	1	Unmodified	1185.6969	0.69688869	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.55	4	5	4				4	5	4	5	7	6	8	70.275	64.862	2	1.617E-14	33728	160513_QHF_FH_JSI12Kac_6	150.08	121.68			1.063	1.0657	41.749	26	7	Median	1.304	1.1077	8.2476	5	1	Median	0.92795	1.0895	58.863	7	2	Median	0.97505	0.97758	31.884	6	0	Median	1.2034	1.2306	44.28	8	4	Median	4886700000	2430800000	2455900000	736610000	320330000	416290000	1217600000	704790000	512850000	1296700000	621820000	674920000	1635700000	783870000	851860000	55107	1415	51906	334339;334340;334341;334342;334343;334344;334345;334346;334347;334348;334349;334350;334351;334352;334353;334354;334355;334356;334357;334358;334359;334360;334361;334362;334363;334364	450840;450841;450842;450843;450844;450845;450846;450847;450848;450849;450850;450851;450852;450853;450854;450855;450856;450857;450858;450859;450860;450861;450862;450863;450864;450865;450866;450867;450868;450869;450870;450871;450872;450873;450874;450875;450876;450877;450878;450879;450880	450877			41	
VLENAEGAR	0	Unmodified	957.48796	0.48795855	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.05	6.08	4	4	3			2	3	3		3	6	4	6	11.471	7.6673	2	4.4439E-06	7264	160511_QHF_FH_JSI9i_1	119.29	85.494			0.96956	0.86245	14.321	19	0	Linear	1.2233	0.98147	10.68	3	0	Median	0.95052	1.1192	13.67	6	0	Median	0.82487	0.82119	22.918	4	0	Linear	0.96631	1.063	11.529	6	0	Median	21381000000	11244000000	10137000000	4046800000	1699700000	2347100000	5891900000	3536900000	2355000000	5584300000	3136200000	2448100000	5858400000	2871400000	2986900000	55108	1480	51907	334365;334366;334367;334368;334369;334370;334371;334372;334373;334374;334375;334376;334377;334378;334379;334380;334381;334382;334383	450881;450882;450883;450884;450885;450886;450887;450888;450889;450890;450891;450892;450893;450894;450895;450896;450897;450898;450899;450900;450901;450902;450903;450904;450905;450906;450907	450895			27	
VLENHAR	0	Unmodified	837.4457	0.4456998	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		4.3218	4.3218	2	0.045987	2049	160511_QHF_FH_JSI11i_3	44.42	34.67			1.359	1.2516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.359	1.2516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	154640000	75101000	79541000	0	0	0	0	0	0	154640000	75101000	79541000	0	0	0	55109	636	51908	334384	450908	450908			1	
VLENIELNK	1	Unmodified	1070.5972	0.59717465	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	43.109	42.404	2	4.7106E-06	38341	160511_QHF_FH_JSI11i_1	118.33	29.038			0.7342	0.8023	18.189	6	1	Median	NaN	NaN	NaN	0	0	Median	0.54091	0.65399	30.881	2	1	Median	0.8212	0.81445	4.1001	2	0	Median	0.71037	0.77467	12.443	2	0	Median	1356400000	715700000	640700000	0	0	0	481550000	278530000	203010000	524580000	261130000	263460000	350270000	176040000	174220000	55110	5494	51909	334385;334386;334387;334388;334389;334390	450909;450910;450911;450912;450913;450914;450915;450916;450917;450918;450919	450910			11	
VLENIELNKK	2	Unmodified	1198.6921	0.69213767	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.67	0.471		2	4									1	5	32.778	32.288	2;3	6.5831E-05	27087	160511_QHF_FH_JSI12i_3	105.52	60.439			0.62205	0.65686	53.916	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43207	0.4163	NaN	1	1	Median	0.69867	0.69674	51.314	5	5	Median	794530000	430620000	363910000	0	0	0	0	0	0	175790000	104190000	71602000	618740000	326430000	292310000	55111	5494	51910	334391;334392;334393;334394;334395;334396	450920;450921;450922;450923;450924;450925;450926	450923			7	
VLENVEHYQELK	1	Unmodified	1499.762	0.76200815	4730	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			38.562	37.597	3	0.0066445	33062	160511_QHF_FH_JSI10i_2	47.712	27.873			1.207	1.43	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.207	1.43	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50040000	24621000	25420000	0	0	0	50040000	24621000	25420000	0	0	0	0	0	0	55112	4730	51911	334397	450927	450927			1	
VLEPYPSK	1	Unmodified	931.50148	0.50148335	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	3	3					3			2	1	3	3	29.509	26.301	2	0.0099662	22778	160511_QHF_FH_JSI9i_2	55.531	28.568			0.93832	0.96372	15.739	7	1	Median	1.1638	0.96372	NaN	1	0	Median	0.66555	0.78785	NaN	1	0	Median	0.99397	1.0121	30.932	2	1	Median	0.93832	1.0185	4.6864	3	0	Median	2318400000	980080000	1338300000	513810000	247510000	266290000	842570000	358920000	483650000	54146000	26642000	27504000	907870000	347010000	560870000	55113	5215	51912	334398;334399;334400;334401;334402;334403;334404;334405;334406	450928;450929;450930;450931;450932;450933;450934	450932			7	
VLEQHKLNK	2	Acetyl (K)	1149.6506	0.6506072	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By matching	15.5	0.5								3	3		1	4	1	23.589	14.711	2;3	0.00049361	9905	160513_QHF_FH_JSI11Kac_5	82.261	50.418			0.26922	0.26111	64.437	5	1	Median	NaN	NaN	NaN	0	0	Median	0.06701	0.078332	NaN	1	1	Median	0.2653	0.26111	0.66703	3	0	Plateau	0.4189	0.45016	NaN	1	0	Median	75556000	61873000	13683000	0	0	0	5703700	5410400	293390	67442000	54733000	12709000	2410400	1730000	680430	55114	1270	51913	334407;334408;334409;334410;334411;334412	450935;450936;450937;450938;450939;450940;450941	450939	1177		7	
VLEQHKLTK	2	Acetyl (K)	1136.6554	0.65535823	1426	P35241	RDX	Radixin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.931	16.819	3	0.046401	10324	160513_QHF_FH_JSI11Kac_6	33.89	26.324			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8077100	8077100	0	0	0	0	0	0	0	8077100	8077100	0	0	0	0	55115	1426	51914	334413	450942	450942			1	
VLEQLEDLDSR	0	Unmodified	1315.662	0.66195975	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	53.808	53.091	2	1.8808E-05	48263	160511_QHF_FH_JSI12i_1	131.82	69.272			1.0464	0.81725	19.601	5	5	Linear	1.4451	1.1978	NaN	1	1	Median	0.63851	0.76465	9.4074	2	2	Median	0.86909	0.83872	NaN	1	1	Median	0.74648	0.79187	NaN	1	1	Median	871600000	408690000	462910000	200080000	75824000	124260000	250440000	134200000	116240000	213420000	99639000	113780000	207660000	99032000	108630000	55116	1273	51915	334414;334415;334416;334417;334418	450943;450944;450945;450946;450947	450944			5	
VLEQLIVAHFPMQSR	0	Unmodified	1766.9502	0.95016004	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.55		6	7						8	4	6	6	5	79.411	75.67	2;3	3.4249E-52	38481	160513_QHF_FH_JSI9Kac_6	190.37	159.14			1.1336	1.1039	17.962	20	1	Median	1.4129	1.227	9.8349	4	0	Median	1.1062	1.2751	14.141	6	0	Median	1.136	1.081	8.7824	5	0	Median	0.91036	0.9542	26.381	5	1	Median	14671000000	6983200000	7687800000	3034000000	937690000	2096300000	4766800000	2521300000	2245500000	4703100000	2449700000	2253400000	2167100000	1074500000	1092600000	55117	2094	51916	334419;334420;334421;334422;334423;334424;334425;334426;334427;334428;334429;334430;334431;334432;334433;334434;334435;334436;334437;334438;334439	450948;450949;450950;450951;450952;450953;450954;450955;450956;450957;450958;450959;450960;450961;450962;450963;450964;450965;450966;450967;450968;450969;450970;450971;450972;450973;450974;450975;450976;450977;450978;450979;450980;450981;450982;450983;450984;450985;450986;450987;450988	450976			41	
VLEQLIVAHFPMQSR	0	Oxidation (M)	1782.9451	0.94507466	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	13.4	5.2			1						4	2		1	2	74.437	67.187	2;3	2.7294E-07	35093	160513_QHF_FH_JSI12Kac_6	106.93	99.521			1.3715	1.1928	26.895	5	1	Median	1.5247	1.3251	14.877	2	0	Median	NaN	NaN	NaN	0	0	Median	2.0448	1.9563	NaN	1	0	Median	1.009	1.0426	4.5479	2	1	Median	876580000	402590000	474000000	289510000	113480000	176030000	0	0	0	247930000	116090000	131840000	339150000	173020000	166120000	55118	2094	51916	334440;334441;334442;334443;334444	450989;450990;450991;450992;450993;450994;450995	450995		1778	7	
VLEQLTGQTPVFSK	1	Unmodified	1545.8403	0.84025847	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	6.05	8	8	4				3	5	1	6	8	7	8	66.33	62.735	2;3	5.1144E-81	55713	160511_QHF_FH_JSI10i_2	245.94	208.82			1.0674	1.09	23.97	28	1	Median	1.306	1.0922	8.5513	6	0	Median	1.0354	1.2459	35.007	8	1	Median	1.0665	1.0486	17.469	7	0	Median	0.94692	1.0532	16.19	7	0	Median	15653000000	7433700000	8219800000	2530000000	1181200000	1348800000	3399400000	1637700000	1761800000	5507400000	2535300000	2972100000	4216600000	2079400000	2137100000	55119	2038	51917	334445;334446;334447;334448;334449;334450;334451;334452;334453;334454;334455;334456;334457;334458;334459;334460;334461;334462;334463;334464;334465;334466;334467;334468;334469;334470;334471;334472;334473	450996;450997;450998;450999;451000;451001;451002;451003;451004;451005;451006;451007;451008;451009;451010;451011;451012;451013;451014;451015;451016;451017;451018;451019;451020;451021;451022;451023;451024;451025;451026;451027;451028;451029;451030;451031;451032;451033;451034;451035;451036;451037;451038;451039;451040;451041;451042;451043;451044;451045;451046;451047;451048;451049;451050;451051;451052;451053;451054;451055;451056;451057	451050			62	
VLEQLTGQTPVFSKAR	1	Acetyl (K)	1814.989	0.98904797	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								5			2	2	1	76.574	66.034	2;3	2.5585E-120	35097	160513_QHF_FH_JSI11Kac_5	264.55	205.12			0.50615	0.59991	68.453	5	1	Median	NaN	NaN	NaN	0	0	Median	0.84421	0.99627	71.736	2	1	Median	0.32392	0.31922	3.1374	2	0	Median	0.68451	0.74727	NaN	1	0	Median	111860000	76885000	34974000	0	0	0	8338400	3960000	4378300	101790000	71776000	30013000	1731300	1149000	582310	55120	2038	51918	334474;334475;334476;334477;334478	451058;451059;451060;451061;451062	451059	2087		5	
VLEQPVVVQSVGTDGR	0	Unmodified	1681.8999	0.89989861	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	53.276	52.505	2;3	4.7379E-15	46693	160511_QHF_FH_JSI9i_1	159.5	145.83			0.9547	0.9562	1.9395	5	0	Median	1.159	0.94882	1.4767	2	0	Median	0.81406	0.96684	NaN	1	0	Median	0.9547	0.92117	NaN	1	0	Median	0.94133	0.9562	NaN	1	0	Median	427510000	203140000	224370000	179900000	75816000	104080000	82714000	42285000	40429000	77623000	36974000	40649000	87274000	48066000	39208000	55121	4558	51919	334479;334480;334481;334482;334483	451063;451064;451065;451066;451067;451068;451069;451070;451071;451072	451072			10	
VLERQPDNAK	1	Unmodified	1168.62	0.62003536	3547	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				7.8041	7.3614	3	0.011124	5203	160511_QHF_FH_JSI9i_2	40.589	30.357			1.4239	1.2254	NaN	1	0	Median	1.4239	1.2254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38396000	16321000	22075000	38396000	16321000	22075000	0	0	0	0	0	0	0	0	0	55122	3547	51920	334484	451073	451073			1	
VLESEQDK	1	Unmodified	946.46074	0.46074075	334	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			7.8047	7.5687	2	0.00596	5398	160511_QHF_FH_JSI10i_1	60.59	35.667			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55123	334	51921	334485	451074	451074			1	
VLESFPTESSIQQK	1	Unmodified	1591.8094	0.80935227	4583	Q9C0D3	ZYG11B	Protein zyg-11 homolog B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			52.44	52.03	2	0.0094648	46902	160511_QHF_FH_JSI10i_1	46.796	30.572			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55124	4583	51922	334486	451075	451075			1	
VLESINVQMDENTLHEILNEVDLNK	1	Unmodified	2908.4488	0.44880244	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		101.72	101.6	3	2.9076E-66	89353	160511_QHF_FH_JSI11i_2	253.9	239.13			0.79697	0.81337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79697	0.81337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	163500000	108690000	54813000	0	0	0	0	0	0	163500000	108690000	54813000	0	0	0	55125	1558	51923	334487	451076	451076			1	
VLESPENK	1	Unmodified	914.47091	0.4709115	3517	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.5	0.5	1	1								1			1	37.386	36.163	2	0.015052	30755	160511_QHF_FH_JSI12i_2	49.59	11.457			1.5537	1.3144	NaN	1	0	Median	1.5537	1.3144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64775000	27748000	37027000	64775000	27748000	37027000	0	0	0	0	0	0	0	0	0	55126	3517	51924	334488;334489	451077;451078	451077			2	
VLESSPVGTAIGSVK	1	Unmodified	1442.7981	0.7980593	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			2	2	3	1	57.477	55.376	2	5.5767E-07	49914	160511_QHF_FH_JSI10i_1	138.75	99.733			0.96149	0.9822	18.343	8	8	Median	1.0353	0.87517	6.6607	2	2	Median	0.80646	0.96939	5.1239	2	2	Median	1.2472	1.2287	21.709	3	3	Median	0.95079	1.0663	NaN	1	1	Median	567480000	269230000	298250000	130630000	58123000	72512000	161820000	80110000	81715000	205480000	94167000	111310000	69540000	36827000	32713000	55127	5745	51925	334490;334491;334492;334493;334494;334495;334496;334497	451079;451080;451081;451082;451083;451084;451085;451086	451081			8	
VLESTPNNGYLYHQIGCCYK	1	Unmodified	2415.0988	0.098751127	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.071	55.947	3	5.4563E-05	49621	160511_QHF_FH_JSI11i_3	69.979	61.16			1.5089	1.521	9.1732	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.694	1.6229	NaN	1	1	Median	1.344	1.4255	NaN	1	1	Median	37407000	8944600	28463000	0	0	0	0	0	0	18733000	3943900	14789000	18674000	5000600	13674000	55128	213	51926	334498;334499	451087;451088	451087			2	
VLESVTVHNPENQSYLIAYK	1	Unmodified	2303.1798	0.17976186	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	64.902	63.999	3	1.095E-08	56249	160511_QHF_FH_JSI9i_2	104.84	96.237			0.9537	1.0722	15.294	4	1	Median	0.92624	0.79723	NaN	1	0	Median	0.88246	1.0725	NaN	1	0	Median	1.0608	1.1002	NaN	1	1	Median	0.98197	1.072	NaN	1	0	Median	230120000	117970000	112150000	38427000	17241000	21185000	55087000	29006000	26080000	78728000	36248000	42480000	57878000	35470000	22408000	55129	3282	51927	334500;334501;334502;334503;334504	451089;451090;451091;451092;451093;451094;451095	451091			7	
VLETAEDIQER	0	Unmodified	1301.6463	0.64630969	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	31.387	30.65	2	5.7198E-05	27301	160511_QHF_FH_JSI11i_1	94.309	72.803			0.91632	0.86619	17.548	5	2	Median	1.2121	0.99837	28.199	2	2	Median	0.91632	1.0743	NaN	1	0	Median	0.89064	0.86619	NaN	1	0	Median	0.80681	0.84019	NaN	1	0	Median	658200000	372410000	285790000	217750000	100480000	117270000	141070000	88260000	52805000	146350000	81714000	64639000	153030000	101960000	51068000	55130	2470	51928	334505;334506;334507;334508;334509	451096;451097;451098;451099;451100;451101;451102	451096			7	
VLETFLAK	1	Unmodified	919.53787	0.53786886	2525	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.67	0.471	1	2								1		2		51.689	51.22	2	0.015932	45004	160511_QHF_FH_JSI9i_2	48.561	22.667			2.2491	2.1881	9.8148	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2491	2.1881	9.8148	2	2	Median	NaN	NaN	NaN	0	0	Median	238510000	96369000	142140000	0	0	0	0	0	0	238510000	96369000	142140000	0	0	0	55131	2525	51929	334510;334511;334512	451103;451104;451105	451104			3	
VLETLASSLHTLK	1	Unmodified	1410.8082	0.80823006	2654	Q15345	LRRC41	Leucine-rich repeat-containing protein 41	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		57.861	57.861	3	0.0033108	51324	160511_QHF_FH_JSI11i_3	52.527	41.257			0.63644	0.59122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63644	0.59122	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44816000	26583000	18233000	0	0	0	0	0	0	44816000	26583000	18233000	0	0	0	55132	2654	51930	334513	451106	451106			1	
VLETPQEIHTVSSEAVSLLEEVITPR	0	Unmodified	2875.5179	0.51786828	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	103.02	102.99	3	1.0491E-17	90869	160511_QHF_FH_JSI9i_2	107.47	95.389			1.3155	1.3344	23.46	4	1	Median	1.6756	1.4855	NaN	1	0	Median	0.73247	0.89223	NaN	1	0	Median	1.5379	1.4481	NaN	1	1	Median	1.1253	1.2296	NaN	1	0	Median	207910000	87625000	120280000	46270000	16702000	29568000	54848000	29121000	25728000	35826000	9910300	25915000	70962000	31892000	39070000	55133	4623	51931	334514;334515;334516;334517	451107;451108;451109	451108			3	
VLETTVEIFNK	1	Unmodified	1291.7024	0.702368	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	2	3	65.964	65.18	2	2.5989E-09	57451	160511_QHF_FH_JSI9i_2	128.86	87.428			0.95531	0.98654	40.623	10	4	Median	1.0631	0.89933	16.239	2	0	Median	0.86127	0.96481	31.521	3	1	Median	0.86979	0.83914	53.159	2	1	Median	0.92675	1.0225	64.477	3	2	Median	962600000	456240000	506370000	153990000	67944000	86042000	294840000	127150000	167690000	215070000	96483000	118580000	298710000	164660000	134050000	55134	4212	51932	334518;334519;334520;334521;334522;334523;334524;334525;334526;334527	451110;451111;451112;451113;451114;451115;451116;451117;451118;451119;451120;451121;451122;451123	451119			14	
VLETVGVFEVPK	1	Unmodified	1315.7388	0.73875351	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	74.579	73.858	2	3.6219E-05	63767	160511_QHF_FH_JSI12i_2	104.52	99.739			1.026	1.0346	8.7303	6	0	Median	1.2358	1.0307	NaN	1	0	Median	0.73255	0.9063	NaN	1	0	Median	1.0183	1.0127	9.9723	2	0	Median	1.0265	1.0913	6.9923	2	0	Median	462540000	217600000	244940000	69131000	35387000	33745000	59527000	32489000	27038000	192360000	87172000	105190000	141520000	62556000	78963000	55135	5534	51933	334528;334529;334530;334531;334532;334533	451124;451125;451126;451127;451128;451129;451130;451131;451132;451133;451134	451126			11	
VLEVDPENPESSAGYAISAYR	0	Unmodified	2266.0754	0.075356373	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	75.975	75.194	2;3	1.1013E-08	68249	160511_QHF_FH_JSI11i_1	124.09	111.33			1.0335	1.0678	28.039	3	1	Median	1.2742	1.0528	39.636	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0335	1.0678	NaN	1	0	Median	80999000	42506000	38493000	50184000	26680000	23504000	0	0	0	0	0	0	30815000	15826000	14989000	55136	942	51934	334534;334535;334536;334537;334538;334539	451135;451136;451137;451138;451139	451135			5	
VLEVNPQNK	1	Unmodified	1039.5662	0.56620887	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	22.047	21.622	2	0.0011469	18939	160511_QHF_FH_JSI12i_1	73.665	55.225			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55137	2419	51935	334540;334541;334542	451140;451141;451142	451140			3	
VLEVPPVVYSR	0	Unmodified	1256.7129	0.71287311	99	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.69	2	4						1		1	2	2	2	69.145	67.023	2	0.00083713	61209	160511_QHF_FH_JSI11i_1	78.934	69.72			0.91604	1.0241	14.808	7	0	Median	1.2035	1.0598	NaN	1	0	Median	0.7118	0.8565	25.279	2	0	Median	0.9758	0.95352	11.024	2	0	Median	0.89615	0.98448	13.991	2	0	Median	777270000	384260000	393010000	128010000	59042000	68969000	189900000	105540000	84356000	282970000	143580000	139400000	176390000	76100000	100290000	55138	99	51936	334543;334544;334545;334546;334547;334548;334549	451143;451144;451145;451146;451147;451148;451149;451150;451151;451152;451153;451154;451155	451143			13	
VLEVQPEK	1	Unmodified	940.52295	0.52294707	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	23.82	23.293	2	0.026895	20627	160511_QHF_FH_JSI12i_1	51.736	36.074			0.29248	0.30157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29248	0.30157	NaN	1	1	Median	47882000	32539000	15343000	0	0	0	0	0	0	0	0	0	47882000	32539000	15343000	55139	2666	51937	334550	451156	451156			1	
VLEYLNDLK	1	Unmodified	1105.6019	0.60192568	5449	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	61.893	60.58	2	0.046266	52022	160511_QHF_FH_JSI12i_2	44.98	13.22			0.91261	1.0366	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91261	1.0366	NaN	1	1	Median	36044000	20138000	15907000	0	0	0	0	0	0	0	0	0	36044000	20138000	15907000	55140	5449	51938	334551	451157	451157			1	
VLFALCSLLR	0	Unmodified	1190.6845	0.68454987	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	91.192	82.883	2	9.4785E-05	48094	160513_QHF_FH_JSI10Kac_6	99.139	46.657			1.0023	0.90433	45.868	4	2	Median	1.0947	0.94469	NaN	1	0	Median	0.63838	0.76627	NaN	1	1	Median	0.91775	0.8657	NaN	1	1	Median	1.9656	2.1072	NaN	1	0	Median	239670000	114770000	124900000	38379000	16659000	21720000	94336000	48480000	45856000	63950000	36101000	27849000	43002000	13526000	29475000	55141	4651	51939	334552;334553;334554;334555	451158;451159;451160	451160			3	
VLFAPMR	0	Unmodified	832.46293	0.46292977	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2.33	0.471		2	1								1	1	1	49.631	49.058	2	0.022515	41911	160511_QHF_FH_JSI12i_3	56.026	47.343			0.71872	0.73191	18.831	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.42493	0.51962	NaN	1	0	Median	0.54096	0.53854	NaN	1	0	Median	0.71872	0.73191	NaN	1	0	Median	291060000	177350000	113710000	0	0	0	38337000	25810000	12527000	43137000	27141000	15996000	209580000	124400000	85185000	55142	2573	51940	334556;334557;334558	451161;451162	451162			2	
VLFASQEIPASPFR	0	Unmodified	1560.83	0.83002813	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.06	3.4	2	8	5						1	4	4	4	4	82.24	81.097	2;3	1.8117E-52	70613	160511_QHF_FH_JSI12i_2	223.14	174.35			1.1452	1.0757	23.804	16	3	Median	1.3553	1.1827	13.734	4	0	Median	0.96655	1.1458	43.678	4	2	Median	0.96458	1.0974	10.764	4	1	Linear	1.0253	1.0926	16.208	4	0	Median	2889500000	1412700000	1476800000	477970000	204350000	273620000	744040000	404510000	339530000	878440000	444530000	433910000	789070000	359350000	429720000	55143	512	51941	334559;334560;334561;334562;334563;334564;334565;334566;334567;334568;334569;334570;334571;334572;334573;334574	451163;451164;451165;451166;451167;451168;451169;451170;451171;451172;451173;451174;451175;451176;451177;451178;451179;451180;451181	451167			19	
VLFATALGTVALALAAHQLK	1	Unmodified	2007.1881	0.18808213	3226	Q7L4E1	FAM73B	Protein FAM73B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.632	91.911	3	0.0023302	53575	160513_QHF_FH_JSI10Kac_6	60.764	56.86			1.0642	1.2261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0642	1.2261	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85656000	51368000	34288000	0	0	0	85656000	51368000	34288000	0	0	0	0	0	0	55144	3226	51942	334575	451182	451182			0	
VLFDNTGR	0	Unmodified	920.47158	0.4715802	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		27.884	27.241	2	0.0057881	22888	160511_QHF_FH_JSI11i_2	64.567	42.865			0.95114	1.0527	7.7267	2	0	Median	NaN	NaN	NaN	0	0	Median	0.81395	0.99673	NaN	1	0	Median	1.1115	1.1118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	379130000	179280000	199850000	0	0	0	136130000	64899000	71231000	243000000	114380000	128620000	0	0	0	55145	4524	51943	334576;334577	451183;451184	451183			2	
VLFEQAFSFHGK	1	Unmodified	1408.7139	0.71393574	5371;5216	Q9P2K3;Q9UKL0	RCOR3;RCOR1	REST corepressor 3;REST corepressor 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	2	2	4	69.933	66.197	2;3	2.6517E-07	34335	160513_QHF_FH_JSI12Kac_6	113.65	94.591			0.74938	0.80869	19.599	10	3	Median	0.72467	0.62016	6.8496	2	0	Median	0.72755	0.88142	0.97354	2	0	Median	0.89991	0.87335	12.439	2	1	Median	0.76032	0.80729	23.386	4	2	Median	993160000	500720000	492450000	89213000	50684000	38529000	100730000	54720000	46014000	204760000	119390000	85366000	598460000	275920000	322540000	55146	5216;5371	51944	334578;334579;334580;334581;334582;334583;334584;334585;334586;334587	451185;451186;451187;451188;451189;451190;451191;451192;451193;451194;451195;451196	451194			10	
VLFGFLYR	0	Unmodified	1013.5698	0.56983769	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	84.851	76.601	2	0.00034338	43488	160513_QHF_FH_JSI10Kac_6	134.12	90.995			0.95386	0.91139	10.668	4	0	Median	1.0182	0.88204	NaN	1	0	Median	0.7259	0.85194	NaN	1	0	Median	1.1314	1.0847	NaN	1	0	Median	0.89356	0.94172	NaN	1	0	Median	2178800000	1068300000	1110500000	358470000	181030000	177440000	1045900000	545010000	500880000	587990000	247410000	340580000	186420000	94814000	91604000	55147	3404	51945	334588;334589;334590;334591	451197;451198;451199;451200;451201;451202	451201			6	
VLFGFLYRK	1	Unmodified	1141.6648	0.6648007	3404	Q8IVD9	NUDCD3	NudC domain-containing protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	76.473	68.334	3	0.00011739	36413	160513_QHF_FH_JSI9Kac_6	91.318	77.548			1.0589	1.123	17.996	3	0	Median	1.6399	1.4079	NaN	1	0	Median	0.85178	0.98662	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0589	1.123	NaN	1	0	Median	209320000	76680000	132640000	62561000	21134000	41426000	115910000	42098000	73816000	0	0	0	30845000	13447000	17398000	55148	3404	51946	334592;334593;334594	451203;451204;451205;451206;451207;451208	451204			6	
VLFGPHMLKPTGK	2	Unmodified	1423.801	0.80097661	2663	Q15390	MTFR1	Mitochondrial fission regulator 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	47.386	46.531	4	6.237E-05	39370	160511_QHF_FH_JSI10i_3	77.078	74.292			1.0484	0.95364	10.359	4	0	Median	1.2062	0.98277	NaN	1	0	Median	0.79297	0.91839	NaN	1	0	Median	1.2268	1.1481	NaN	1	0	Median	0.91126	0.92537	NaN	1	0	Median	415900000	207810000	208080000	112900000	48109000	64791000	65545000	35696000	29850000	96463000	47528000	48935000	140990000	76479000	64508000	55149	2663	51947	334595;334596;334597;334598	451209;451210;451211	451209			3	
VLFHLLDR	0	Unmodified	1011.5866	0.58655038	3262	Q7Z3U7	MON2	Protein MON2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.7	60.689	3	0.00078874	53543	160511_QHF_FH_JSI11i_3	66.692	30.297			1.1327	1.0644	12.366	3	0	Plateau	1.0489	0.86768	NaN	1	0	Median	0.73581	0.85191	NaN	1	0	Median	1.1327	1.0645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86810000	44122000	42688000	21182000	10094000	11088000	19633000	12308000	7324600	45995000	21720000	24275000	0	0	0	55150	3262	51948	334599;334600;334601;334602	451212;451213;451214;451215;451216;451217	451213			6	
VLFHSASFQR	0	Unmodified	1190.6196	0.61964142	3358	Q86WG5	SBF2	Myotubularin-related protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	44.663	35.416	3	1.3947E-06	19567	160513_QHF_FH_JSI10Kac_6	109.79	100.36			1.2225	1.2787	8.0167	4	0	Median	1.5658	1.2851	NaN	1	0	Median	1.1185	1.292	NaN	1	0	Median	1.3362	1.2724	NaN	1	0	Median	1.0382	1.0936	NaN	1	0	Median	97222000	46017000	51205000	16203000	5746900	10456000	52947000	25148000	27799000	9636500	4766600	4869900	18435000	10355000	8080100	55151	3358	51949	334603;334604;334605;334606	451218;451219;451220;451221;451222;451223	451223			6	
VLFICTANVTDTIPEPLRDR	0	Unmodified	2329.21	0.21001614	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		94.485	93.743	3	0.0018652	78106	160511_QHF_FH_JSI10i_3	42.913	29.286			1.341	1.2832	24.589	4	1	Median	1.9213	1.5837	12.187	2	1	Median	0.99618	1.1332	NaN	1	0	Median	1.0482	0.9983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	103770000	42787000	60981000	41320000	14320000	27000000	35828000	14646000	21182000	26619000	13820000	12799000	0	0	0	55152	1459	51950	334607;334608;334609;334610	451224;451225	451224			2	
VLFILFR	0	Unmodified	906.56911	0.5691094	2864	Q562E7	WDR81	WD repeat-containing protein 81	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.418	80.134	2	2.562E-08	45989	160513_QHF_FH_JSI10Kac_6	146.24	146.24			0.88579	0.92715	35.306	4	0	Median	1.2413	1.0858	NaN	1	0	Median	1.0391	1.2491	NaN	1	0	Median	0.57732	0.56526	NaN	1	0	Median	0.75511	0.79167	NaN	1	0	Median	292940000	162140000	130800000	65597000	35196000	30401000	150120000	79969000	70153000	39737000	25728000	14009000	37481000	21249000	16232000	55153	2864	51951	334611;334612;334613;334614	451226;451227;451228;451229;451230;451231;451232	451232			7	
VLFLDHPK	1	Unmodified	967.5491	0.54910224	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	0	By matching		By MS/MS		3	0			2							1		1		38.616	37.86	3	0.0015211	33074	160511_QHF_FH_JSI11i_3	62.546	46.392			1.0575	0.91792	3.0936	2	0	Median	1.1252	0.93822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99393	0.89806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	64972000	26173000	38799000	12746000	5501900	7244000	0	0	0	52226000	20672000	31555000	0	0	0	55154	4602	51952	334615;334616	451233	451233			1	
VLFLIPK	1	Unmodified	828.54731	0.54731133	5206;5721	Q9P289;O00506;Q9Y6E0	STK26;STK25;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 25;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	75.759	72.421	2	0.0054387	38102	160513_QHF_FH_JSI11Kac_6	94.669	94.669			1.0109	1.0458	12.986	12	0	Median	1.2133	1.0044	10.943	3	0	Median	0.9269	1.1878	13.11	3	0	Plateau	0.93283	0.95414	13.563	3	0	Median	1.0691	1.1359	7.0657	3	0	Plateau	3089200000	1424600000	1664600000	659860000	292650000	367210000	833950000	404210000	429740000	957260000	457980000	499280000	638130000	269740000	368380000	55155	5206;5721	51953	334617;334618;334619;334620;334621;334622;334623;334624;334625;334626;334627;334628	451234;451235;451236;451237;451238;451239;451240;451241;451242;451243;451244;451245;451246;451247;451248;451249;451250;451251;451252;451253;451254;451255;451256;451257;451258	451241			25	
VLFLIPKNNPPTLVGDFTK	2	Acetyl (K)	2154.2089	0.20887715	5206	Q9P289	STK26	Serine/threonine-protein kinase 26	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		95.59	86.19	3	0.00037806	48796	160513_QHF_FH_JSI11Kac_6	86.8	75.685			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18753000	18753000	0	0	0	0	0	0	0	18753000	18753000	0	0	0	0	55156	5206	51954	334629	451259	451259	3334		1	
VLFLLGADGGCITR	0	Unmodified	1490.7915	0.79153413	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	85.664	85.512	2	0.00050022	74299	160511_QHF_FH_JSI12i_3	93.821	68.604			0.62898	0.65145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62898	0.65145	NaN	1	1	Median	46714000	24678000	22036000	0	0	0	0	0	0	0	0	0	46714000	24678000	22036000	55157	1306	51955	334630;334631	451260;451261	451261			2	
VLFPATGYLSIVWK	1	Unmodified	1592.8967	0.89665113	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.67		7	6						9	5	5	7	5	99.544	96.015	2;3	5.9928E-17	51752	160513_QHF_FH_JSI10Kac_6	172.8	124.01			0.98683	1.0452	13.894	22	4	Median	1.1756	1.0157	16.02	5	0	Median	0.9658	1.1547	14.226	5	0	Median	0.9623	0.94142	12.537	7	3	Median	0.96807	1.026	8.3375	5	1	Median	34929000000	16829000000	18100000000	5914600000	2636300000	3278300000	8612200000	4156500000	4455700000	13679000000	6694300000	6984500000	6723600000	3341800000	3381800000	55158	1650	51956	334632;334633;334634;334635;334636;334637;334638;334639;334640;334641;334642;334643;334644;334645;334646;334647;334648;334649;334650;334651;334652;334653	451262;451263;451264;451265;451266;451267;451268;451269;451270;451271;451272;451273;451274;451275;451276;451277;451278;451279;451280;451281;451282;451283;451284;451285;451286;451287;451288;451289;451290;451291;451292;451293	451288			32	
VLFPGIEDHPVLR	0	Unmodified	1490.8245	0.82454882	468	O75051	PLXNA2	Plexin-A2	no	no	0	0	0	0				By MS/MS	3	0			1										1	71.255	70.958	3	0.010459	61480	160511_QHF_FH_JSI12i_3	37.954	29.355			0.9975	0.93289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9975	0.93289	NaN	1	0	Median	32001000	14127000	17873000	0	0	0	0	0	0	0	0	0	32001000	14127000	17873000	55159	468	51957	334654	451294	451294			1	
VLFPLLTK	1	Unmodified	929.59499	0.5949898	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	84.269	83.578	2	0.00032001	72487	160511_QHF_FH_JSI12i_3	112.17	84.646			1.0612	0.94926	17.688	8	0	Median	1.2908	1.0716	18.094	2	0	Median	0.93392	1.1335	24.421	2	0	Median	0.95418	0.91451	4.6083	2	0	Median	0.93044	0.97156	26.228	2	0	Median	554540000	271190000	283350000	105230000	46437000	58790000	107030000	59112000	47917000	144570000	72909000	71657000	197720000	92736000	104990000	55160	3838	51958	334655;334656;334657;334658;334659;334660;334661;334662	451295;451296;451297;451298;451299;451300;451301;451302;451303;451304;451305;451306;451307;451308;451309;451310;451311;451312;451313;451314;451315;451316;451317	451316			23	
VLFQNAQGQFLYAYR	0	Unmodified	1816.9261	0.92605378	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.5	4		4						1	2	3	1	3	70.147	68.328	2	9.5985E-16	37866	160513_QHF_FH_JSI12Kac_6	183.03	150.51			0.80546	0.84903	16.417	9	3	Median	1.1582	0.9595	17.297	2	0	Median	0.7079	0.82785	19.394	3	2	Median	0.95492	0.93305	NaN	1	0	Median	0.76779	0.80055	13.374	3	1	Median	562450000	302680000	259770000	184570000	92998000	91573000	130530000	76916000	53615000	126900000	68163000	58739000	120450000	64600000	55845000	55161	4792	51959	334663;334664;334665;334666;334667;334668;334669;334670;334671	451318;451319;451320;451321;451322;451323;451324	451324			7	
VLFRPSDTANSSNQDALSSNTSLK	1	Unmodified	2551.2514	0.25142326	3533	Q8N4V1	MMGT1	Membrane magnesium transporter 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		53.455	52.433	3	1.8976E-10	42881	160511_QHF_FH_JSI9i_3	86.211	79.869			0.86113	0.80481	17.368	5	1	Median	0.97714	0.80397	12.463	2	0	Median	0.76035	0.92184	19.2	2	0	Median	0.72897	0.67123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	372000000	191330000	180670000	202520000	102300000	100220000	140950000	77972000	62979000	28526000	11056000	17470000	0	0	0	55162	3533	51960	334672;334673;334674;334675;334676	451325;451326;451327;451328;451329;451330;451331;451332	451328			8	
VLFSSNGGVVK	1	Unmodified	1105.6132	0.61315906	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.54	4	4	4				1	4	3	5	5	5	5	47.371	42.796	2	6.2998E-18	36743	160511_QHF_FH_JSI12i_3	157.91	110.06			1.0164	1.0121	16.671	20	0	Median	1.0923	0.89522	13.6	5	0	Median	0.92018	1.1092	15.941	5	0	Median	1.0452	1.0301	17.924	5	0	Median	0.91419	1.0059	14.549	5	0	Median	6892400000	3357000000	3535300000	974390000	405120000	569270000	1422400000	737090000	685290000	2356800000	1138900000	1217900000	2138800000	1076000000	1062800000	55163	1281	51961	334677;334678;334679;334680;334681;334682;334683;334684;334685;334686;334687;334688;334689;334690;334691;334692;334693;334694;334695;334696	451333;451334;451335;451336;451337;451338;451339;451340;451341;451342;451343;451344;451345;451346;451347;451348;451349;451350;451351;451352;451353;451354;451355;451356;451357;451358;451359;451360;451361;451362;451363;451364;451365;451366;451367	451365			35	
VLFTCFK	1	Unmodified	913.47316	0.47316011	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0				By MS/MS	2	0		1											1	57.373	56.017	2	0.060724	47954	160511_QHF_FH_JSI12i_2	45.718	12.789			1.0181	1.1703	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0181	1.1703	NaN	1	1	Median	54124000	29570000	24554000	0	0	0	0	0	0	0	0	0	54124000	29570000	24554000	55164	999;2197	51962	334697	451368	451368			1	
VLFTSLADNK	1	Unmodified	1106.5972	0.59717465	3651	Q8NF91	SYNE1	Nesprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	3.2	4	8	1				1			4	3	4	3	49.402	47.747	2	0.0071326	44056	160511_QHF_FH_JSI12i_1	51.854	28.783			0.99799	1.0173	11.265	14	0	Median	1.1344	0.93222	12.631	4	0	Median	0.87456	1.0886	5.5568	3	0	Median	1.0461	1.0431	6.1734	4	0	Median	0.89255	0.92631	14.064	3	0	Median	3485500000	1858400000	1627100000	739110000	338120000	400980000	797780000	446680000	351100000	1062000000	540730000	521320000	886620000	532880000	353730000	55165	3651	51963	334698;334699;334700;334701;334702;334703;334704;334705;334706;334707;334708;334709;334710;334711	451369;451370;451371;451372;451373;451374;451375;451376;451377;451378;451379;451380;451381;451382;451383;451384;451385;451386	451376			18	
VLFVHSGADR	0	Unmodified	1099.5774	0.57744226	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.1	6.29			3						5	2	3	2	1	30.23	24.766	2;3	0.0012266	14097	160513_QHF_FH_JSI10Kac_6	57.348	44.772			1.0993	0.95541	35.227	7	3	Median	1.1402	0.93406	6.4379	2	1	Median	0.67563	0.79756	25.538	2	1	Median	0.88785	0.84791	36.525	2	1	Median	1.6315	1.8646	NaN	1	0	Median	133890000	70464000	63426000	44816000	22051000	22765000	35122000	20213000	14910000	51286000	26946000	24340000	2664600	1253000	1411700	55166	3146	51964	334712;334713;334714;334715;334716;334717;334718;334719	451387;451388;451389;451390;451391;451392;451393;451394	451393			8	
VLFYEEELVRR	0	Unmodified	1451.7773	0.77726428	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	61.298	60.887	3	0.015363	53927	160511_QHF_FH_JSI11i_3	47.302	34.535			0.96789	0.96628	62.684	3	1	Median	0.48885	0.40609	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4722	1.3724	NaN	1	1	Median	0.96789	0.96628	NaN	1	0	Median	173130000	89068000	84066000	35201000	19702000	15499000	0	0	0	77514000	34654000	42860000	60419000	34712000	25707000	55167	5677	51965	334720;334721;334722	451395;451396;451397	451395			3	
VLFYPTLLYTLFR	0	Unmodified	1644.928	0.92795126	3764	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	99.738	91.304	2;3	2.8104E-109	49794	160513_QHF_FH_JSI12Kac_6	310	253.44			1.0627	1.1066	15.625	8	0	Median	1.533	1.3199	2.0398	2	0	Median	0.86504	1.0177	1.9549	2	0	Median	1.2082	1.141	28.745	2	0	Median	1.0356	1.0893	12.127	2	0	Median	9040500000	4065800000	4974700000	1963100000	744900000	1218200000	3852200000	1844600000	2007500000	1040900000	453640000	587300000	2184200000	1022600000	1161600000	55168	3764	51966	334723;334724;334725;334726;334727;334728;334729;334730	451398;451399;451400;451401;451402;451403;451404;451405;451406;451407;451408;451409;451410	451405			13	
VLGALLFVK	1	Unmodified	958.62154	0.62153891	3398	Q8IUR0	TRAPPC5	Trafficking protein particle complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	82.986	78.522	2	0.00051398	73444	160511_QHF_FH_JSI11i_3	89.369	59.562			1.3757	1.4969	62.651	8	4	Median	1.371	1.1488	115.98	2	1	Median	1.2494	1.4345	60.063	2	1	Median	1.3593	1.2851	76.948	2	1	Median	1.5097	1.5497	58.933	2	1	Median	881040000	483510000	397540000	272000000	168240000	103770000	245000000	150620000	94383000	196460000	99693000	96770000	167580000	64959000	102620000	55169	3398	51967	334731;334732;334733;334734;334735;334736;334737;334738	451411;451412;451413;451414;451415;451416;451417;451418;451419	451411			9	
VLGAPVPAFEGR	0	Unmodified	1211.6663	0.66625727	139	O00468	AGRN	Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	60.241	59.307	2	0.01098	50916	160511_QHF_FH_JSI12i_2	56.432	35.911			0.87693	0.77317	19.892	3	1	Plateau	0.85347	0.73475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9587	0.94713	NaN	1	0	Median	0.99515	1.0876	NaN	1	1	Median	115180000	49532000	65643000	44800000	13524000	31275000	0	0	0	33087000	17569000	15517000	37289000	18438000	18851000	55170	139	51968	334739;334740;334741	451420;451421	451420			2	
VLGATLLPDLIQK	1	Unmodified	1379.8388	0.8388019	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.611	2	14	13							8	7	6	8	95.047	94.702	2;3	2.977E-52	81803	160511_QHF_FH_JSI12i_2	197.06	158.04			0.94747	0.95184	21.006	16	16	Median	0.94603	0.79535	5.1213	4	4	Linear	0.79398	0.95407	26.588	4	4	Median	1.0477	1.033	8.1905	4	4	Median	1.0417	1.083	26.528	4	4	Median	1743400000	855230000	888210000	272130000	134470000	137660000	313040000	174830000	138210000	651160000	294260000	356900000	507110000	251680000	255430000	55171	1862	51969	334742;334743;334744;334745;334746;334747;334748;334749;334750;334751;334752;334753;334754;334755;334756;334757;334758;334759;334760;334761;334762;334763;334764;334765;334766;334767;334768;334769;334770	451422;451423;451424;451425;451426;451427;451428;451429;451430;451431;451432;451433;451434;451435;451436;451437;451438;451439;451440;451441;451442;451443;451444;451445;451446;451447;451448;451449;451450;451451;451452;451453;451454;451455;451456;451457;451458;451459;451460	451431			39	
VLGDTLLTKPVEISADGLPSPNQLK	2	Unmodified	2604.4374	0.43743311	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	93.872	93.868	3;4	7.8742E-11	81505	160511_QHF_FH_JSI12i_3	87.511	80.847			0.92976	0.96353	9.5533	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2243	1.1618	NaN	1	0	Median	0.94104	0.99297	4.2553	2	0	Median	86988000	44914000	42074000	0	0	0	0	0	0	17619000	7783600	9835600	69369000	37131000	32238000	55172	1152	51970	334771;334772;334773	451461;451462;451463;451464;451465	451463			5	
VLGEAMTGISQNAK	1	Unmodified	1417.7235	0.72351415	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	4.23	2	8	2				2			2	4	4	4	44.647	42.517	2;3	3.5256E-06	38137	160511_QHF_FH_JSI10i_1	122.7	83.395			1.3173	1.3853	42.922	14	10	Median	1.6177	1.364	22.717	2	1	Median	1.3664	1.6261	56.816	4	3	Median	1.3973	1.4191	57.726	4	3	Median	1.2532	1.3938	29.025	4	3	Linear	1266900000	552920000	714000000	217430000	95620000	121810000	321760000	135400000	186360000	451460000	195410000	256050000	276260000	126490000	149770000	55173	5616	51971	334774;334775;334776;334777;334778;334779;334780;334781;334782;334783;334784;334785;334786;334787	451466;451467;451468;451469;451470;451471;451472;451473;451474;451475;451476;451477;451478	451472			12	
VLGEAQTK	1	Unmodified	844.46543	0.46543219	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		9.4516	9.0238	2	0.027434	6503	160511_QHF_FH_JSI9i_1	51.346	26.452			0.28097	0.24731	18.64	2	2	Median	0.26847	0.21677	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29406	0.28215	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1877600000	1613800000	263870000	906040000	791310000	114730000	0	0	0	971590000	822460000	149140000	0	0	0	55174	4361	51972	334788;334789	451479;451480	451480			2	
VLGEKGK	2	Acetyl (K)	771.44905	0.44905385	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		17.063	9.4425	2	0.048402	7328	160513_QHF_FH_JSI11Kac_4	60.76	12.586			0.36802	0.36341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36802	0.36341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133650000	96512000	37138000	0	0	0	0	0	0	133650000	96512000	37138000	0	0	0	55175	1055	51973	334790	451481	451481			1	
VLGELWPLFGGR	0	Unmodified	1342.7398	0.73975656	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	99.501	98.293	2	2.989E-11	90488	160511_QHF_FH_JSI11i_3	152.34	121.27			0.85044	0.97631	9.2021	5	0	Median	1.309	1.0444	NaN	1	0	Median	0.82636	0.94086	5.2301	2	0	Median	1.065	1.0292	NaN	1	0	Median	0.8004	0.83798	NaN	1	0	Median	2100200000	1105900000	994320000	431440000	193460000	237980000	517300000	278350000	238950000	620210000	335690000	284520000	531270000	298400000	232870000	55176	1304	51974	334791;334792;334793;334794;334795	451482;451483;451484;451485;451486;451487;451488;451489	451483			8	
VLGENYTLEDEEDSQICTVGR	0	Unmodified	2426.0907	0.09074844	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		64.356	63.987	2	1.2784E-69	58171	160511_QHF_FH_JSI11i_1	189.31	169.57			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7587400	7587400	0	0	0	0	7587400	7587400	0	0	0	0	0	0	0	55177	2609	51975	334796;334797	451490;451491	451490			2	
VLGFLIENFK	1	Unmodified	1178.6699	0.66994566	4137	Q96JC1	VPS39	Vam6/Vps39-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	91.634	91.59	2	1.3914E-05	79427	160511_QHF_FH_JSI12i_3	112.84	80.001			0.34653	0.34449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34653	0.34449	NaN	1	1	Median	30055000	24960000	5094900	0	0	0	0	0	0	0	0	0	30055000	24960000	5094900	55178	4137	51976	334798	451492	451492			1	
VLGFVKVAK	2	Acetyl (K)	1001.6274	0.62735256	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	67.434	58.286	2	0.0049365	31610	160513_QHF_FH_JSI11Kac_6	74.255	37.234			0.57103	0.61892	52.044	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85828	0.9943	NaN	1	0	Median	0.35986	0.3516	NaN	1	0	Median	0.57103	0.61892	NaN	1	0	Median	55696000	38117000	17579000	0	0	0	14162000	7828200	6333400	32662000	24548000	8113900	8872400	5741100	3131200	55179	1645	51977	334799;334800;334801	451493;451494	451493	1656		2	
VLGGSFADQK	1	Unmodified	1020.524	0.52400971	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	29.026	28.29	2	4.6676E-05	24448	160511_QHF_FH_JSI9i_2	93.598	64.221			0.9707	0.82156	21.085	5	3	Linear	0.86694	0.74657	NaN	1	0	Median	0.9707	1.195	NaN	1	1	Median	1.0152	0.98401	NaN	1	1	Median	0.94402	1.0182	24.803	2	1	Median	537100000	282850000	254250000	135870000	77990000	57882000	113990000	59398000	54596000	148640000	72422000	76213000	138600000	73041000	65557000	55180	3921	51978	334802;334803;334804;334805;334806	451495;451496;451497;451498;451499;451500	451496			6	
VLGHVNNILISAVLPTAFR	0	Unmodified	2033.1786	0.17858007	3689	Q8TB36	GDAP1	Ganglioside-induced differentiation-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		90.336	82.404	3	2.9069E-07	47565	160513_QHF_FH_JSI10Kac_6	90.654	80.458			0.89351	1.0725	29.783	3	0	Median	1.517	1.2956	NaN	1	0	Median	0.89351	1.0725	NaN	1	0	Median	0.75291	0.7227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	363580000	187430000	176150000	101840000	40239000	61598000	153130000	84163000	68967000	108620000	63031000	45586000	0	0	0	55181	3689	51979	334807;334808;334809	451501;451502;451503	451503			3	
VLGILAMIDEGETDWK	1	Oxidation (M)	1804.8917	0.89170169	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1		1	2	2	95.17	93.248	2	8.4823E-06	83702	160511_QHF_FH_JSI12i_3	124.1	117.22			0.74102	0.71374	33.591	4	3	Median	NaN	NaN	NaN	0	0	Median	0.45458	0.54438	NaN	1	1	Median	0.84339	0.79448	45.096	2	2	Median	0.89819	0.88204	NaN	1	0	Median	100740000	64229000	36513000	0	0	0	7363500	6429000	934520	29527000	18934000	10593000	63851000	38866000	24985000	55182	2641	51980	334810;334811;334812;334813;334814	451504;451505;451506;451507;451508;451509;451510;451511	451510		2060	8	
VLGILAMIDEGETDWK	1	Unmodified	1788.8968	0.89678707	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.13	4.67		9	4						2	2	3	5	5	101.29	99.955	2;3	1.4039E-65	88754	160511_QHF_FH_JSI12i_3	285.13	261.28			0.85768	0.92482	50.702	15	6	Median	1.1559	0.9777	7.8643	2	0	Median	0.6915	0.85027	5.9428	3	0	Plateau	0.75747	0.73206	82.995	5	4	Median	0.88176	0.98496	14.166	5	2	Median	4750300000	2705700000	2044600000	679900000	276410000	403490000	522490000	312550000	209940000	1633800000	1081100000	552730000	1914100000	1035600000	878460000	55183	2641	51980	334815;334816;334817;334818;334819;334820;334821;334822;334823;334824;334825;334826;334827;334828;334829	451512;451513;451514;451515;451516;451517;451518;451519;451520;451521;451522;451523;451524;451525;451526;451527;451528;451529;451530	451529			19	
VLGIQVDTDGSGR	0	Unmodified	1315.6732	0.67319314	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	2	1	3	46.971	46.122	2	2.9659E-05	41757	160511_QHF_FH_JSI11i_1	118.4	96.94			0.95196	0.894	20.091	8	4	Median	1.1858	0.99486	33.82	2	1	Median	0.83995	1.0261	31.915	2	1	Median	0.94646	0.91349	NaN	1	0	Median	0.80339	0.87493	15.92	3	2	Median	1291600000	649690000	641890000	173220000	87048000	86173000	336030000	172270000	163760000	213300000	93913000	119380000	569030000	296460000	272570000	55184	1410	51981	334830;334831;334832;334833;334834;334835;334836;334837	451531;451532;451533;451534;451535;451536;451537;451538;451539;451540	451532			10	
VLGISPDEQK	1	Unmodified	1084.5764	0.57643921	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		1	0	3									1	1	1		32.685	32.075	2	0.0021369	28116	160511_QHF_FH_JSI9i_1	61.679	49.724			1.0016	1.0718	13.242	3	0	Plateau	1.0016	0.82561	NaN	1	0	Median	0.83597	0.97827	NaN	1	0	Median	1.0903	1.0718	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	119220000	64124000	55099000	33759000	17126000	16633000	40570000	23201000	17368000	44894000	23796000	21098000	0	0	0	55185	3858	51982	334838;334839;334840	451541	451541			1	
VLGIYTFTK	1	Unmodified	1040.5906	0.59063271	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	1	2	2	3	69.386	64.77	2	4.9148E-05	35011	160513_QHF_FH_JSI11Kac_6	104.44	69.081			0.48043	0.48787	27.664	8	7	Median	0.49059	0.41196	NaN	1	1	Median	0.41844	0.48787	19.964	2	1	Median	0.55217	0.52016	51.097	2	2	Median	0.65685	0.67305	28.594	3	3	Plateau	1266700000	827040000	439670000	138320000	91526000	46798000	267370000	177630000	89742000	367390000	241980000	125410000	493610000	315900000	177710000	55186	2947	51983	334841;334842;334843;334844;334845;334846;334847;334848	451542;451543;451544;451545;451546;451547;451548;451549	451544			8	
VLGLAHSTTGPQESK	1	Unmodified	1523.7944	0.79437091	2580	Q14865	ARID5B	AT-rich interactive domain-containing protein 5B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	23.986	23.973	3	0.00021609	19828	160511_QHF_FH_JSI12i_3	53.403	45.679			0.70263	0.6979	41.944	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54489	0.51878	NaN	1	1	Median	0.90603	0.93885	NaN	1	0	Median	68922000	30649000	38273000	0	0	0	0	0	0	29519000	16667000	12852000	39404000	13983000	25421000	55187	2580	51984	334849;334850	451550;451551	451551			2	
VLGLGLLINLVEYSAR	0	Unmodified	1729.0138	0.013806156	3282	Q7Z5K2	WAPAL	Wings apart-like protein homolog	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			100.28	94.559	2;3	8.0049E-05	55656	160513_QHF_FH_JSI10Kac_6	98.368	66.525			0.42364	0.49889	50.309	2	1	Median	NaN	NaN	NaN	0	0	Median	0.42364	0.49889	50.309	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131030000	75902000	55128000	0	0	0	131030000	75902000	55128000	0	0	0	0	0	0	55188	3282	51985	334851;334852	451552;451553	451552			2	
VLGLLGALDPYK	1	Unmodified	1257.7333	0.7332742	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	95.735	95.413	2	0.0035693	84397	160511_QHF_FH_JSI10i_2	65.347	53.984			2.3698	2.7086	24.454	4	4	Median	3.8237	3.3315	NaN	1	1	Median	1.8853	2.4117	NaN	1	1	Median	2.9787	3.0419	NaN	1	1	Median	1.8248	1.9328	NaN	1	1	Median	59263000	17340000	41923000	12294000	2009700	10284000	13350000	5326000	8024400	20500000	4863500	15636000	13119000	5141300	7977600	55189	1535	51986	334853;334854;334855;334856	451554;451555;451556;451557	451557			4	
VLGLNEDPLK	1	Unmodified	1096.6128	0.61282471	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		1	0	3									1	1	1		58.693	58.047	2	0.0034849	52415	160511_QHF_FH_JSI10i_1	56.434	39.338			1.354	1.0905	11.859	3	0	Median	1.354	1.0905	NaN	1	0	Median	0.90004	1.0684	NaN	1	0	Median	1.3567	1.3245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133950000	65057000	68894000	24620000	12299000	12321000	55493000	28445000	27048000	53838000	24314000	29525000	0	0	0	55190	752	51987	334857;334858;334859	451558;451559	451559			2	
VLGLVLLR	0	Unmodified	881.60622	0.60622319	1059	P63162;P14678	SNRPN;SNRPB	Small nuclear ribonucleoprotein-associated protein N;Small nuclear ribonucleoprotein-associated proteins B and B'	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	81.23	72.534	2	7.0081E-05	40617	160513_QHF_FH_JSI10Kac_6	127.66	55.943			1.0298	1.009	25.536	5	0	Median	1.6225	1.397	14.933	2	0	Median	0.66383	0.8006	NaN	1	0	Median	1.0298	0.96738	NaN	1	0	Median	0.9423	1.009	NaN	1	0	Median	706930000	321260000	385670000	236660000	95067000	141590000	288120000	143490000	144630000	139740000	63314000	76424000	42416000	19387000	23029000	55191	1059	51988	334860;334861;334862;334863;334864	451560;451561;451562;451563;451564	451564			5	
VLGMDPLPQMSQR	0	Unmodified	1470.7323	0.7323047	4161	Q96KR1	ZFR	Zinc finger RNA-binding protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	68.325	67.026	2	0.00015167	57662	160511_QHF_FH_JSI12i_2	83.869	27.664			0.35566	0.39142	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35566	0.39142	NaN	1	0	Median	59951000	42783000	17169000	0	0	0	0	0	0	0	0	0	59951000	42783000	17169000	55192	4161	51989	334865	451565	451565			1	
VLGMDPLPSK	1	Unmodified	1055.5685	0.56851706	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	2	2	54.083	53.284	2	1.3769E-05	45707	160511_QHF_FH_JSI12i_2	101.64	92.871			0.63222	0.69096	49.226	8	6	Median	0.27145	0.22473	NaN	1	1	Median	0.48675	0.58376	40.753	3	3	Plateau	0.57353	0.57098	58.893	2	1	Median	0.63222	0.69096	12.385	2	1	Median	3892100000	2610200000	1281900000	524960000	426780000	98182000	1263900000	862920000	400990000	1367700000	914140000	453570000	735490000	406330000	329160000	55193	2325	51990	334866;334867;334868;334869;334870;334871;334872;334873	451566;451567;451568;451569;451570;451571;451572;451573;451574;451575	451568			10	
VLGMTLIQK	1	Unmodified	1001.5943	0.59433788	2221	Q04760	GLO1	Lactoylglutathione lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	63.549	59.43	2	4.5526E-05	48600	160511_QHF_FH_JSI9i_3	98.523	73.629			1.0587	0.99759	12.482	13	0	Median	1.1829	0.99309	6.7827	4	0	Median	0.92581	1.0753	6.6178	3	0	Median	1.0587	0.99759	11.514	3	0	Median	0.84977	0.89836	25.515	3	0	Median	10410000000	5002000000	5408000000	1679200000	775010000	904220000	2150400000	1160800000	989580000	2999300000	1336500000	1662800000	3581100000	1729700000	1851400000	55194	2221	51991	334874;334875;334876;334877;334878;334879;334880;334881;334882;334883;334884;334885;334886	451576;451577;451578;451579;451580;451581;451582;451583;451584;451585;451586;451587;451588;451589;451590;451591;451592;451593;451594;451595;451596;451597;451598;451599;451600;451601;451602;451603;451604	451587			29	
VLGNLQLNLLSK	1	Unmodified	1310.7922	0.79218606	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	82.893	82.209	2	1.8668E-05	71358	160511_QHF_FH_JSI12i_3	112.13	73.338			1.1247	1.0953	7.5807	4	0	Median	1.2623	1.0439	NaN	1	0	Median	1.0261	1.1492	NaN	1	0	Median	1.2327	1.1517	NaN	1	0	Median	0.96489	0.98706	NaN	1	0	Median	196190000	81139000	115050000	19690000	8453300	11237000	21670000	11632000	10037000	43465000	20767000	22699000	111360000	40286000	71076000	55195	5465	51992	334887;334888;334889;334890	451605;451606;451607	451607			3	
VLGNMVHAIQIK	1	Unmodified	1321.754	0.75402642	1193	P21359	NF1	Neurofibromin;Neurofibromin truncated	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	54.53	54.292	3	4.8471E-05	46625	160511_QHF_FH_JSI12i_3	94.767	79.623			1.8029	1.8447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8029	1.8447	NaN	1	1	Median	69873000	30603000	39271000	0	0	0	0	0	0	0	0	0	69873000	30603000	39271000	55196	1193	51993	334891	451608	451608			1	
VLGPCSDILK	1	Unmodified	1100.59	0.58998078	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	52.874	51.926	2	0.0068135	44826	160511_QHF_FH_JSI11i_2	52.255	32.478			1.0668	1.3143	25.243	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0668	1.3143	NaN	1	0	Median	0.89219	0.88918	NaN	1	0	Median	1.28	1.4259	NaN	1	0	Median	312610000	143530000	169080000	0	0	0	61724000	29308000	32416000	144260000	69189000	75074000	106620000	45032000	61592000	55197	977	51994	334892;334893;334894	451609	451609			1	
VLGQGEEWR	0	Unmodified	1072.5302	0.53015772	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		30.501	29.844	2	0.0039869	25213	160511_QHF_FH_JSI11i_2	57.931	39.2			1.3656	1.5024	27.706	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5126	1.8276	NaN	1	0	Median	1.2329	1.2351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	180910000	83496000	97418000	0	0	0	73531000	33100000	40431000	107380000	50396000	56987000	0	0	0	55198	140	51995	334895;334896	451610	451610			1	
VLGQGEEWRGGDGINSIGGGQK	1	Unmodified	2213.0825	0.082507436	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	50.604	49.917	3	0.00012251	44126	160511_QHF_FH_JSI11i_3	55.127	41.295			1.1864	1.2774	23.743	4	1	Median	NaN	NaN	NaN	0	0	Median	0.83283	1.0035	19.401	2	0	Median	1.5532	1.4648	NaN	1	0	Median	1.4358	1.4176	NaN	1	1	Median	285950000	127250000	158710000	0	0	0	115020000	57650000	57368000	144040000	61371000	82665000	26901000	8228000	18673000	55199	140	51996	334897;334898;334899;334900	451611;451612;451613;451614;451615	451611			5	
VLGQGSFGK	1	Unmodified	891.48142	0.48141661	2669;1755	Q15418;P51812;Q9UK32	RPS6KA1;RPS6KA3;RPS6KA6	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	25.135	24.486	2	0.00066253	20158	160511_QHF_FH_JSI10i_3	76.478	50.651			1.0232	1.0345	57.329	6	3	Median	1.3017	1.0612	NaN	1	1	Median	0.69157	0.8214	29.031	2	1	Median	0.65122	0.6247	109.44	2	1	Median	1.1773	1.2058	NaN	1	0	Median	1530000000	880880000	649110000	76594000	38435000	38160000	325300000	215300000	110000000	699980000	432180000	267800000	428110000	194970000	233150000	55200	2669;1755	51997	334901;334902;334903;334904;334905;334906	451616;451617;451618;451619;451620;451621;451622	451618			7	
VLGQLTETGVVSPEQFMK	1	Unmodified	1962.0132	0.013213808	4048	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	87.173	86.637	2;3	1.9647E-41	78509	160511_QHF_FH_JSI10i_1	208.68	169.89			1.0379	1.081	7.4674	14	0	Median	1.1107	0.94969	7.3489	3	0	Plateau	0.84525	1.0193	5.5768	4	0	Median	1.0957	1.1019	10.057	4	0	Median	0.99921	1.0881	1.5327	3	0	Median	963370000	482490000	480880000	151360000	68542000	82814000	289760000	156490000	133270000	320960000	147770000	173190000	201300000	109690000	91611000	55201	4048	51998	334907;334908;334909;334910;334911;334912;334913;334914;334915;334916;334917;334918;334919;334920;334921;334922	451623;451624;451625;451626;451627;451628;451629;451630;451631;451632;451633;451634;451635;451636;451637;451638;451639;451640;451641;451642;451643;451644;451645;451646;451647;451648	451634			24	
VLGQPHHELDSK	1	Unmodified	1358.6943	0.69426293	4028	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.831	2	1	6							1	1	4	3	14.116	14.029	2;3;4	7.3471E-08	9227	160511_QHF_FH_JSI12i_3	138.22	120.4			1.1561	1.1668	20.102	9	1	Median	1.4078	1.1964	NaN	1	1	Median	0.74513	0.8717	NaN	1	0	Median	0.99926	0.93688	24.438	4	0	Median	1.2501	1.2956	6.049	3	0	Plateau	2142800000	1023900000	1118800000	29756000	14313000	15442000	135880000	74406000	61478000	848140000	436650000	411490000	1129000000	498540000	630440000	55202	4028	51999	334923;334924;334925;334926;334927;334928;334929;334930;334931	451649;451650;451651;451652;451653;451654;451655;451656;451657;451658;451659;451660	451656			11	
VLGSEGEEEDEALSPAK	1	Unmodified	1758.816	0.81595379	1148	P18858	LIG1	DNA ligase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	41.462	40.704	2	2.944E-10	36000	160511_QHF_FH_JSI9i_1	150.21	128.02			0.98789	0.90598	14.705	4	4	Median	1.0015	0.85341	NaN	1	1	Median	0.97446	1.1346	NaN	1	1	Median	1.0035	0.9618	NaN	1	1	Median	0.79176	0.81668	NaN	1	1	Median	191520000	106690000	84824000	59587000	42954000	16633000	50582000	25223000	25359000	46493000	20906000	25587000	34856000	17610000	17246000	55203	1148	52000	334932;334933;334934;334935;334936	451661;451662;451663;451664;451665	451664			5	
VLGSGAFGTVYK	1	Unmodified	1197.6394	0.63937381	774	P00533;P04626;Q15303	EGFR;ERBB2;ERBB4	Epidermal growth factor receptor;Receptor tyrosine-protein kinase erbB-2;Receptor tyrosine-protein kinase erbB-4;ERBB4 intracellular domain	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.86		3	3						2	1	1	3	3	55.711	52.671	2	2.0016E-07	46572	160511_QHF_FH_JSI11i_3	132.78	99.939			1.0162	1.0313	14.166	8	3	Median	0.90683	0.76948	NaN	1	1	Median	0.85485	1.0032	NaN	1	0	Median	1.0925	1.0408	6.6704	3	1	Median	1.0034	1.086	14.158	3	1	Median	710940000	334650000	376290000	116450000	67446000	49000000	56955000	30950000	26005000	271650000	111680000	159980000	265890000	124580000	141310000	55204	774	52001	334937;334938;334939;334940;334941;334942;334943;334944	451666;451667;451668;451669;451670;451671;451672;451673	451666			8	
VLGSSTSATNSTSVSSR	0	Unmodified	1639.8013	0.80130678	2595	Q15004	KIAA0101	PCNA-associated factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.92	3.43	4	4	3				1			2	2	4	4	20.321	19.028	2	2.8606E-40	16366	160511_QHF_FH_JSI10i_1	201.95	183.21			0.96883	0.99944	12.707	10	0	Median	1.2267	1.0437	8.223	2	0	Median	0.71924	0.86932	13.246	2	0	Median	1.1023	1.0781	18.263	3	0	Median	0.94437	1.0144	7.3843	3	0	Median	383870000	195490000	188380000	72765000	29865000	42900000	113030000	62554000	50473000	99414000	51036000	48378000	98659000	52033000	46627000	55205	2595	52002	334945;334946;334947;334948;334949;334950;334951;334952;334953;334954;334955;334956	451674;451675;451676;451677;451678;451679;451680;451681;451682;451683;451684;451685;451686;451687;451688;451689;451690;451691;451692;451693	451681			20	
VLGSSVAGLR	0	Unmodified	957.56073	0.56072956	2251	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		1.33	0.471	2	1								1	1	1		11.937	11.425	3	0.032842	8922	160511_QHF_FH_JSI11i_1	19.243	0.46041			1.2727	1.2348	47.557	3	0	Plateau	0.78268	0.64134	NaN	1	0	Median	0.40226	0.48975	NaN	1	0	Median	1.2727	1.2348	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	964850000	399130000	565720000	56309000	33137000	23173000	37658000	28758000	8900900	870880000	337230000	533640000	0	0	0	55206	2251	52003	334957;334958;334959	451694	451694			1	
VLGSVSQFEEFGR	0	Unmodified	1453.7201	0.72014333	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	68.582	67.806	2	0.00014676	59801	160511_QHF_FH_JSI9i_2	84.198	63.199			1.0657	1.0504	18.225	5	0	Median	1.1964	1.0504	NaN	1	0	Median	0.81772	1.0017	NaN	1	0	Median	1.0657	1.0826	NaN	1	0	Median	1.1805	1.2566	29.785	2	0	Median	681430000	324810000	356620000	132050000	52522000	79525000	129960000	62065000	67899000	180620000	84007000	96611000	238800000	126210000	112590000	55207	714	52004	334960;334961;334962;334963;334964	451695;451696;451697;451698	451695			4	
VLGTAFDPFLGGK	1	Unmodified	1320.7078	0.70778773	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.99	3	4	2					1		3	2	3	2	84.683	82.971	2	3.341E-10	72679	160511_QHF_FH_JSI12i_2	177.78	133.43			0.99793	0.93389	30.417	9	2	Median	1.285	1.0632	16.455	3	0	Median	0.76013	0.93389	NaN	1	0	Median	1.1768	1.2191	26.67	3	1	Plateau	0.75716	0.81818	70.883	2	1	Median	2185800000	1164600000	1021300000	374050000	198890000	175160000	496790000	297330000	199460000	781780000	393640000	388140000	533230000	274700000	258530000	55208	3852	52005	334965;334966;334967;334968;334969;334970;334971;334972;334973;334974	451699;451700;451701;451702;451703;451704;451705;451706;451707;451708;451709;451710;451711;451712;451713;451714;451715	451702			17	
VLGTEDLYDYIDK	1	Unmodified	1542.7454	0.74535503	2076	P68400	CSNK2A1	Casein kinase II subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	81.053	80.646	2	3.544E-10	73512	160511_QHF_FH_JSI12i_1	144.7	119.84			0.9387	0.90504	6.4751	5	2	Median	1.1172	0.89158	NaN	1	0	Median	0.82007	0.94975	8.8652	2	2	Median	0.95046	0.90504	NaN	1	0	Median	0.9387	1.005	NaN	1	0	Median	1243300000	621190000	622150000	247470000	100760000	146700000	412600000	224020000	188580000	318690000	157230000	161460000	264590000	139180000	125420000	55209	2076	52006	334975;334976;334977;334978;334979	451716;451717;451718;451719;451720;451721;451722;451723	451719			8	
VLGTEELYGYLK	1	Unmodified	1383.7286	0.72858275	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	1	2		77.514	77.045	2	1.7326E-05	67904	160511_QHF_FH_JSI11i_2	112.71	102.76			0.74743	0.68139	13.266	4	0	Median	0.73862	0.62551	NaN	1	0	Median	0.50325	0.59869	NaN	1	0	Median	0.77813	0.76526	4.3163	2	0	Median	NaN	NaN	NaN	0	0	Median	314310000	171830000	142490000	71304000	38386000	32918000	55206000	33999000	21207000	187800000	99444000	88360000	0	0	0	55210	1165	52007	334980;334981;334982;334983	451724;451725;451726	451726			3	
VLGTFLFGAAVSQSLTDLAK	1	Unmodified	2037.1146	0.11464241	360	O43688	PPAP2C	Lipid phosphate phosphohydrolase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									5	1	2	2		97.659	89.785	2;3	1.2524E-138	53430	160513_QHF_FH_JSI10Kac_6	298.78	259.12			1.2941	1.0865	33.702	5	1	Median	1.2941	1.0865	NaN	1	0	Median	0.71658	0.85629	31.431	2	1	Median	1.6351	1.548	4.7102	2	0	Median	NaN	NaN	NaN	0	0	Median	612160000	316370000	295790000	183780000	79739000	104040000	210580000	133390000	77185000	217810000	103240000	114560000	0	0	0	55211	360	52008	334984;334985;334986;334987;334988	451727;451728;451729;451730;451731;451732;451733;451734	451734			8	
VLGTPVETIELTEDRR	0	Unmodified	1826.9738	0.97379183	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	62.51	61.991	3	6.4003E-06	55016	160511_QHF_FH_JSI11i_3	106.3	87.936			1.0071	0.9792	14.732	5	0	Median	1.0071	0.88238	NaN	1	0	Median	0.65064	0.8038	NaN	1	0	Median	1.0911	1.0684	12.325	2	0	Median	1.0494	1.0647	NaN	1	0	Median	908110000	407100000	501010000	103960000	41046000	62915000	165180000	64465000	100720000	404050000	184360000	219690000	234920000	117220000	117690000	55212	1296	52009	334989;334990;334991;334992;334993	451735;451736;451737;451738;451739;451740;451741;451742	451736			8	
VLGTSPEAIDSAENR	0	Unmodified	1557.7635	0.76346471	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	39.794	39.186	2	8.3719E-05	35549	160511_QHF_FH_JSI12i_1	111.52	92.21			0.90699	0.88498	9.2067	4	2	Median	1.1293	0.93808	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90699	0.88498	2.7551	2	2	Median	0.74122	0.75911	NaN	1	0	Median	625650000	342160000	283500000	150920000	68606000	82313000	0	0	0	341120000	197360000	143760000	133620000	76193000	57423000	55213	1296	52010	334994;334995;334996;334997	451743;451744;451745;451746;451747;451748	451746			6	
VLGTSPEAIDSAENRFK	1	Unmodified	1832.9268	0.92684164	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	53.457	53.298	3	0.00034265	45690	160511_QHF_FH_JSI12i_3	70.802	53.724			2.0399	2.1147	17.366	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2098	2.0833	NaN	1	1	Median	1.7498	1.8129	21.779	2	2	Median	371100000	126140000	244970000	0	0	0	0	0	0	123430000	38010000	85420000	247670000	88127000	159550000	55214	1296	52011	334998;334999;335000;335001	451749;451750;451751;451752	451751			4	
VLGTSVESIMATEDR	0	Unmodified	1606.7872	0.78723662	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.04	5.59	6	8	6					5	1	5	6	7	8	67.953	65.18	2;3	5.0183E-98	57220	160511_QHF_FH_JSI11i_2	262	226.49			1.1945	1.1816	19.143	24	3	Median	1.3513	1.138	6.3282	4	0	Median	0.98422	1.1618	12.037	6	1	Median	1.1802	1.1374	29.515	7	1	Median	1.3387	1.3468	16.738	7	1	Median	6110800000	2992500000	3118300000	624780000	302610000	322170000	1669800000	899140000	770660000	2718400000	1279200000	1439200000	1097900000	511580000	586320000	55215	1372	52012	335002;335003;335004;335005;335006;335007;335008;335009;335010;335011;335012;335013;335014;335015;335016;335017;335018;335019;335020;335021;335022;335023;335024;335025;335026;335027	451753;451754;451755;451756;451757;451758;451759;451760;451761;451762;451763;451764;451765;451766;451767;451768;451769;451770;451771;451772;451773;451774;451775;451776;451777;451778;451779;451780;451781;451782;451783;451784;451785;451786;451787;451788;451789;451790;451791;451792;451793	451777			40	
VLGTSVESIMATEDR	0	Oxidation (M)	1622.7822	0.78215124	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2	0		2									1		1	48.951	47.772	2	0.047599	42205	160511_QHF_FH_JSI10i_2	56.359	41.94			0.83396	0.96108	7.3965	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83523	1.0127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8327	0.9121	NaN	1	0	Median	40942000	27715000	13227000	0	0	0	18563000	13654000	4909300	0	0	0	22379000	14062000	8317600	55216	1372	52012	335028;335029	451794;451795	451795			2	
VLGTSVESIMATEDRQLFSDK	1	Unmodified	2325.1522	0.15222649	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	89.731	89.321	3	8.7943E-16	74671	160511_QHF_FH_JSI10i_3	139.17	130.57			1.0942	1.1908	31.121	4	2	Median	NaN	NaN	NaN	0	0	Median	1.271	1.5343	13.345	2	1	Median	1.0792	1.0157	NaN	1	0	Median	0.84358	0.84336	NaN	1	1	Median	397050000	172310000	224740000	0	0	0	149290000	63613000	85676000	144760000	55243000	89514000	103000000	53453000	49548000	55217	1372	52013	335030;335031;335032;335033	451796;451797;451798;451799;451800	451798			5	
VLGTVKWFNVR	1	Acetyl (K)	1359.7663	0.76630566	2066;1106	P67809;P16989	YBX1;YBX3	Nuclease-sensitive element-binding protein 1;Y-box-binding protein 3	no	no	1	0	0	1			By MS/MS		16	0									1			1		82.374	73.059	2	5.9836E-10	40238	160513_QHF_FH_JSI11Kac_6	132.01	98.632			0.32255	0.30317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32255	0.30317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77965000	59998000	17966000	0	0	0	0	0	0	77965000	59998000	17966000	0	0	0	55218	2066;1106	52014	335034	451801	451801	965		1	
VLGVPIIVQASQAEK	1	Unmodified	1550.9032	0.90319307	2538	Q14498	RBM39	RNA-binding protein 39	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	6	8	6							3	5	6	6	78.515	77.919	2;3	5.5484E-15	67845	160511_QHF_FH_JSI12i_3	164.9	153.17			1.0074	1.032	10.969	20	2	Median	1.0003	0.88258	11.184	3	0	Plateau	0.84401	0.94387	13.34	5	0	Median	1.1178	1.0687	9.973	6	1	Median	1.043	1.0303	6.3141	6	1	Median	2356700000	1164900000	1191800000	236870000	106770000	130100000	366410000	211380000	155030000	847460000	398550000	448910000	905960000	448160000	457790000	55219	2538	52015	335035;335036;335037;335038;335039;335040;335041;335042;335043;335044;335045;335046;335047;335048;335049;335050;335051;335052;335053;335054	451802;451803;451804;451805;451806;451807;451808;451809;451810;451811;451812;451813;451814;451815;451816;451817;451818;451819;451820;451821;451822;451823;451824;451825;451826;451827;451828;451829;451830;451831;451832;451833	451830			32	
VLGVPPPQIFWK	1	Unmodified	1379.7965	0.79654316	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	93.728	93.274	2	8.8908E-05	82688	160511_QHF_FH_JSI10i_2	95.099	92.94			0.92767	0.97844	26.99	6	2	Median	0.94125	0.81553	27.941	2	1	Median	0.8232	1.0165	NaN	1	0	Median	1.2658	1.2206	34.93	2	1	Median	0.89551	0.96343	NaN	1	0	Median	155050000	72580000	82472000	29929000	13358000	16571000	28673000	13926000	14747000	64556000	29758000	34798000	31894000	15539000	16356000	55220	3805	52016	335055;335056;335057;335058;335059;335060	451834;451835;451836;451837;451838;451839;451840;451841;451842;451843;451844;451845	451843			12	
VLGVSDVITWNDIHHK	1	Unmodified	1831.9581	0.95808219	3719	Q8TDB6	DTX3L	E3 ubiquitin-protein ligase DTX3L	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.814	67.516	4	2.8475E-05	58370	160511_QHF_FH_JSI12i_3	91.207	71.368			1.2224	1.2339	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2224	1.2339	NaN	1	1	Median	62650000	30723000	31928000	0	0	0	0	0	0	0	0	0	62650000	30723000	31928000	55221	3719	52017	335061	451846	451846			1	
VLGVSGSQSR	0	Unmodified	988.53016	0.53015772	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	6.17	3	4	3				2	4		2	4	5	5	16.342	12.726	2	1.1548E-05	11420	160511_QHF_FH_JSI10i_2	103.56	75.051			0.97072	1.0337	17.779	16	3	Median	1.1584	0.96524	4.6966	2	0	Median	0.7935	1.0215	8.8321	4	0	Linear	1.093	1.0657	27.319	5	1	Median	0.92417	1.0225	17.871	5	2	Median	3134300000	1392500000	1741800000	435880000	179570000	256310000	519330000	276720000	242610000	1001200000	476690000	524550000	1177900000	459570000	718330000	55222	1604	52018	335062;335063;335064;335065;335066;335067;335068;335069;335070;335071;335072;335073;335074;335075;335076;335077	451847;451848;451849;451850;451851;451852;451853;451854;451855;451856;451857;451858;451859;451860;451861;451862;451863;451864;451865;451866	451864			20	
VLHAEQEK	1	Unmodified	952.49779	0.49779495	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	5.6412	5.2353	2	0.0077005	3143	160511_QHF_FH_JSI11i_2	58.716	26.574			0.9638	1.0451	8.6786	4	0	Median	1.1068	0.96922	NaN	1	0	Median	0.94338	1.1917	NaN	1	0	Median	0.98465	1.0294	NaN	1	0	Median	0.92925	1.0611	NaN	1	0	Median	141810000	77738000	64067000	28230000	16018000	12212000	40902000	19646000	21255000	37408000	21304000	16103000	35266000	20769000	14497000	55223	2938	52019	335078;335079;335080;335081	451867;451868;451869;451870;451871	451870			5	
VLHALFLFQEPR	0	Unmodified	1468.8191	0.81906951	5361	Q9UK61	FAM208A	Protein FAM208A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	80.457	72.199	2;3	1.0963E-15	39398	160513_QHF_FH_JSI11Kac_6	108.37	87.991			1.2064	1.0972	12.748	8	0	Median	1.387	1.1716	16.914	2	0	Median	0.8359	0.97936	1.0863	2	0	Median	1.2331	1.1804	10.314	2	0	Median	1.1474	1.2072	13.53	2	0	Median	1088400000	553300000	535060000	209010000	96990000	112020000	509200000	286630000	222570000	225390000	103410000	121980000	144760000	66266000	78490000	55224	5361	52020	335082;335083;335084;335085;335086;335087;335088;335089	451872;451873;451874;451875;451876;451877;451878;451879	451872			8	
VLHDAQQQCRDGHPVVVNILIGR	0	Unmodified	2623.3765	0.37652139	10	A1L0T0	ILVBL	Acetolactate synthase-like protein	yes	yes	0	0	0	1			By MS/MS		16	0									1			1		95.913	86.514	3	0.057555	49074	160513_QHF_FH_JSI11Kac_6	29.476	5.5642			1.3219	1.2475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3219	1.2475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	156650000	66054000	90597000	0	0	0	0	0	0	156650000	66054000	90597000	0	0	0	55225	10	52021	335090	451880	451880			1	
VLHDEILNKPMETLK	2	Unmodified	1778.9601	0.96005603	5512	Q9Y2D2	SLC35A3	UDP-N-acetylglucosamine transporter	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	53.058	52.822	2	0.00041796	45304	160511_QHF_FH_JSI12i_3	78.908	65.245			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55226	5512	52022	335091	451881	451881			1	
VLHEAEGHIVTCETNTGEVYR	0	Unmodified	2413.1332	0.13322238	2003	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	36.627	36.554	3;4	8.0847E-29	31993	160511_QHF_FH_JSI11i_3	175.52	167.33			1.0904	1.0815	31.656	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87474	0.82549	1.3731	2	0	Median	1.3949	1.4274	2.4024	2	0	Median	535230000	239110000	296120000	0	0	0	0	0	0	247290000	124090000	123200000	287940000	115020000	172920000	55227	2003	52023	335092;335093;335094;335095;335096;335097	451882;451883;451884;451885;451886;451887;451888;451889	451884			8	
VLHFFNVK	1	Unmodified	1002.5651	0.56508666	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	2	3	54.692	50.699	2;3	0.00016277	41508	160511_QHF_FH_JSI9i_3	89.55	80.687			0.89386	0.94991	15.956	11	0	Median	1.1584	0.98314	5.6443	3	0	Median	0.82054	0.94991	4.0609	3	0	Median	0.78005	0.74227	23.543	2	0	Median	0.95331	1.0385	18.816	3	0	Median	1827300000	859430000	967890000	451320000	170420000	280900000	345760000	192020000	153740000	412030000	201750000	210280000	618200000	295230000	322970000	55228	614	52024	335098;335099;335100;335101;335102;335103;335104;335105;335106;335107;335108	451890;451891;451892;451893;451894;451895;451896;451897;451898;451899;451900;451901;451902;451903;451904;451905	451896			16	
VLHFYNVK	1	Unmodified	1018.56	0.56000128	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	3	3	3	3	39.313	35.721	2;3	4.2843E-05	28959	160511_QHF_FH_JSI9i_3	107.32	90.541			1.0988	1.1203	16.514	12	1	Median	1.4517	1.1535	11.339	3	1	Plateau	0.88575	1.0695	8.5936	3	0	Median	1.0441	1.0179	12.698	3	0	Median	1.1828	1.1947	23.875	3	0	Median	3990200000	1835100000	2155100000	1197600000	377170000	820460000	750390000	307040000	443350000	734830000	384330000	350500000	1307300000	766530000	540810000	55229	1814	52025	335109;335110;335111;335112;335113;335114;335115;335116;335117;335118;335119;335120	451906;451907;451908;451909;451910;451911;451912;451913;451914;451915;451916;451917;451918;451919;451920;451921;451922;451923	451913			18	
VLHGALWK	1	Unmodified	922.53887	0.53887191	3476	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			32.911	31.512	2	0.019092	25709	160511_QHF_FH_JSI9i_3	47.067	26.785			1.1437	1.133	23.352	2	0	Median	1.147	0.96053	NaN	1	0	Median	1.1403	1.3364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59377000	29705000	29672000	33761000	16900000	16861000	25616000	12805000	12811000	0	0	0	0	0	0	55230	3476	52026	335121;335122	451924;451925	451925			2	
VLHGEQYLELYK	1	Unmodified	1490.7769	0.77692993	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	55.649	54.697	2;3	1.5238E-06	46984	160511_QHF_FH_JSI12i_2	103.88	92.934			0.89929	0.98054	6.6867	8	0	Median	1.246	1.0699	2.7989	2	0	Median	0.78404	0.95635	6.7616	2	0	Median	0.97005	0.98523	7.4487	2	0	Median	0.85521	0.94039	2.6845	2	0	Median	1078100000	489280000	588790000	149990000	76849000	73140000	240280000	140780000	99504000	434550000	153890000	280660000	253250000	117770000	135480000	55231	1747	52027	335123;335124;335125;335126;335127;335128;335129;335130	451926;451927;451928;451929;451930;451931;451932;451933;451934;451935;451936;451937;451938;451939;451940;451941	451928			16	
VLHGEQYLELYKPLPR	1	Unmodified	1954.0676	0.06763264	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	63.347	62.503	4	3.9329E-16	55157	160511_QHF_FH_JSI11i_3	166.09	148.87			1.1279	1.071	13.014	5	1	Median	1.4086	1.185	14.293	2	1	Median	0.87859	1.0218	NaN	1	0	Median	0.9559	0.92699	NaN	1	0	Median	1.1279	1.1508	NaN	1	0	Median	962840000	440260000	522580000	97107000	37153000	59953000	122460000	63669000	58790000	496210000	212220000	283990000	247060000	127220000	119850000	55232	1747	52028	335131;335132;335133;335134;335135	451942;451943;451944;451945;451946;451947;451948;451949;451950	451943			9	
VLHIDLWK	1	Unmodified	1022.5913	0.59130141	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	64.226	63.632	3	0.0016838	54855	160511_QHF_FH_JSI12i_3	60.436	54.401			1.1705	1.3246	15.96	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1705	1.3246	NaN	1	0	Median	1.1236	1.0071	NaN	1	0	Median	1.3139	1.3309	NaN	1	0	Median	102440000	49660000	52779000	0	0	0	19909000	10583000	9326400	47693000	23084000	24609000	34836000	15992000	18844000	55233	2338	52029	335136;335137;335138;335139	451951;451952;451953;451954;451955;451956;451957;451958	451957			8	
VLHIPEFYVGSILR	0	Unmodified	1641.9243	0.92426287	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.4		1	4						3	2	3	1	2	91.513	86.708	3	1.5744E-06	84007	160511_QHF_FH_JSI12i_3	86.944	75.674			1.0936	1.0849	67.991	5	2	Median	1.0936	0.94696	NaN	1	0	Median	1.022	1.1732	11.067	2	1	Median	0.31006	0.3002	NaN	1	1	Median	1.7005	1.819	NaN	1	0	Median	683120000	536260000	146860000	46444000	21472000	24971000	135440000	76343000	59093000	483250000	431580000	51666000	17991000	6859200	11131000	55234	1656	52030	335140;335141;335142;335143;335144;335145;335146;335147	451959;451960;451961;451962;451963;451964;451965	451964			6	
VLHLAHK	1	Unmodified	816.49701	0.49700709	3873	Q92696	RABGGTA	Geranylgeranyl transferase type-2 subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	7.4858	7.5835	2	0.049359	5040	160511_QHF_FH_JSI12i_3	43	18.002			0.71037	0.72082	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71037	0.72082	NaN	1	0	Median	34334000	18715000	15619000	0	0	0	0	0	0	0	0	0	34334000	18715000	15619000	55235	3873	52031	335148	451966	451966			1	
VLHLELK	1	Unmodified	850.52764	0.52763852	4723	Q9H4K7	MTG2	Mitochondrial ribosome-associated GTPase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	45.661	39.55	3	0.013307	32802	160511_QHF_FH_JSI11i_3	41.652	6.8282			0.096668	0.10576	109.51	3	2	Median	NaN	NaN	NaN	0	0	Median	0.079675	0.091097	NaN	1	1	Median	0.68609	0.65125	NaN	1	0	Median	0.096668	0.10576	NaN	1	1	Median	38423000	27438000	10986000	0	0	0	12530000	11277000	1253300	17644000	8756000	8888100	8249500	7405200	844300	55236	4723	52032	335149;335150;335151	451967;451968;451969	451967			3	
VLHMDRNPYYGGESASITPLEDLYK	1	Oxidation (M)	2883.3749	0.37490921	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			4								3	1		75.224	74.155	4	5.7204E-11	65424	160511_QHF_FH_JSI11i_3	86.211	83.41			1.0516	1.1437	13.427	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0997	1.2347	10.024	3	1	Median	1.0056	0.95959	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182320000	94089000	88233000	0	0	0	101630000	57365000	44263000	80694000	36724000	43970000	0	0	0	55237	1702	52033	335152;335153;335154;335155	451970;451971;451972;451973;451974;451975	451972		1379	6	
VLHMDRNPYYGGESASITPLEDLYK	1	Unmodified	2867.38	0.37999459	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.74	0.438		7	20							7	15	3	2	82.216	81.333	3;4	7.4869E-63	71259	160511_QHF_FH_JSI11i_3	212.38	205.65			0.94095	1.0766	20.018	26	5	Median	1.4193	1.248	12.082	7	2	Median	0.89858	1.0766	17.37	14	3	Median	0.87363	0.81539	8.1083	3	0	Median	0.7855	0.79254	2.9036	2	0	Median	3139300000	1520400000	1618900000	306350000	111410000	194940000	1119200000	593610000	525600000	1126700000	509470000	617200000	587070000	305910000	281160000	55238	1702	52033	335156;335157;335158;335159;335160;335161;335162;335163;335164;335165;335166;335167;335168;335169;335170;335171;335172;335173;335174;335175;335176;335177;335178;335179;335180;335181;335182	451976;451977;451978;451979;451980;451981;451982;451983;451984;451985;451986;451987;451988;451989;451990;451991;451992;451993;451994;451995;451996;451997;451998;451999;452000;452001;452002;452003;452004;452005;452006;452007;452008;452009;452010;452011;452012;452013;452014;452015;452016;452017;452018;452019	451978			44	
VLHNAQEVEK	1	Unmodified	1165.6091	0.60913632	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.33	0.471		2	1								1	2		9.4746	9.2249	2;3	3.2706E-05	6936	160511_QHF_FH_JSI11i_3	73.327	60.75			1.0002	1.0856	44.827	2	0	Median	NaN	NaN	NaN	0	0	Median	1.199	1.4905	NaN	1	0	Median	0.83436	0.7907	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	136620000	74240000	62376000	0	0	0	29828000	14413000	15415000	106790000	59827000	46961000	0	0	0	55239	1694	52034	335183;335184;335185	452020;452021;452022	452020			3	
VLHNIMSIFTFMGANVMR	0	Unmodified	2080.042	0.042028291	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.65	89.93	3	0.00016955	51912	160513_QHF_FH_JSI10Kac_6	99.711	82.632			0.79672	0.95802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79672	0.95802	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	144280000	81428000	62848000	0	0	0	144280000	81428000	62848000	0	0	0	0	0	0	55240	4733	52035	335186	452023	452023			1	
VLHNPSGVFHFMQSLALLMSPVK	1	Unmodified	2551.3443	0.34434155	4855	Q9HCE0	EPG5	Ectopic P granules protein 5 homolog	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		97.71	88.304	4	6.8321E-14	50444	160513_QHF_FH_JSI11Kac_6	107.08	86.193			1.2076	1.1612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2076	1.1612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	119550000	52344000	67202000	0	0	0	0	0	0	119550000	52344000	67202000	0	0	0	55241	4855	52036	335187	452024	452024			1	
VLHNQLVLFHNAIAAYFAGNQK	1	Unmodified	2467.3124	0.31244779	1796	P53367	ARFIP1	Arfaptin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	2	3	2	86.307	77.905	2;3;4	1.5833E-286	42672	160513_QHF_FH_JSI9Kac_6	427.4	392.58			0.98612	0.92564	20.21	10	1	Median	1.0961	0.92977	9.0225	3	1	Median	0.51968	0.61712	15.829	2	0	Median	0.97305	0.92376	2.4023	3	0	Median	0.93855	0.98041	8.9906	2	0	Median	11867000000	6202900000	5664100000	4029400000	1815000000	2214400000	2410500000	1600800000	809720000	3438000000	1797200000	1640800000	1989100000	989870000	999220000	55242	1796	52037	335188;335189;335190;335191;335192;335193;335194;335195;335196;335197	452025;452026;452027;452028;452029;452030;452031;452032;452033;452034;452035;452036;452037;452038;452039	452031			15	
VLHNYLVWR	0	Unmodified	1198.6611	0.66111231	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	4	1	1	60.794	52.881	2;3	8.9195E-07	29003	160513_QHF_FH_JSI10Kac_6	124.98	124.98			0.95149	1.0763	15.934	7	3	Median	1.5866	1.3741	NaN	1	1	Median	0.9627	1.1333	14.607	4	2	Median	0.95149	0.93422	NaN	1	0	Median	0.91743	0.98088	NaN	1	0	Median	407300000	203360000	203940000	46930000	20740000	26190000	286310000	150530000	135780000	44254000	18195000	26059000	29808000	13894000	15914000	55243	714	52038	335198;335199;335200;335201;335202;335203;335204;335205	452040;452041;452042;452043;452044;452045;452046;452047;452048;452049	452049			10	
VLHPEQHR	0	Unmodified	1014.5359	0.5359118	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	5.0027	5.0497	2;3	0.00349	2499	160511_QHF_FH_JSI12i_3	51.059	37.29			0.76372	0.74227	6.2861	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76372	0.72535	1.2594	2	0	Median	0.78733	0.78949	6.7194	2	0	Median	524710000	291700000	233010000	0	0	0	0	0	0	287820000	162940000	124880000	236900000	128770000	108130000	55244	1273	52039	335206;335207;335208;335209	452050;452051;452052;452053;452054	452054			5	
VLHSALFTFDLIESVLAR	0	Unmodified	2030.1201	0.12006214	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.834	92.113	3	0.00013158	53712	160513_QHF_FH_JSI10Kac_6	119.04	87.244			0.74699	0.8612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74699	0.8612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115130000	69557000	45572000	0	0	0	115130000	69557000	45572000	0	0	0	0	0	0	55245	3918	52040	335210	452055	452055			1	
VLHVSENPVPLTVR	0	Unmodified	1558.8831	0.88312633	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							1	4	3	3	55.362	54.714	2;3	2.1328E-05	46851	160511_QHF_FH_JSI12i_3	86.756	82.19			0.99256	0.99203	17.92	9	0	Median	1.3482	1.1846	NaN	1	0	Median	1.0527	1.237	1.4101	2	0	Median	1.0334	0.99203	24.991	3	0	Median	0.87683	0.90345	5.21	3	0	Median	1568400000	757610000	810760000	130770000	50122000	80652000	322160000	147040000	175120000	577930000	259290000	318630000	537510000	301150000	236360000	55246	3506	52041	335211;335212;335213;335214;335215;335216;335217;335218;335219;335220;335221	452056;452057;452058;452059;452060;452061;452062;452063;452064;452065	452065			10	
VLHYGDLDDNPQGEVTFESLQEK	1	Unmodified	2632.2293	0.22929083	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	87.266	87.027	3	0.00017128	62312	160511_QHF_FH_JSI12i_3	49.577	36.257			1.1494	1.2322	17.442	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1494	1.2322	17.442	2	1	Median	113140000	39904000	73233000	0	0	0	0	0	0	0	0	0	113140000	39904000	73233000	55247	4141	52042	335222;335223	452066;452067	452067			2	
VLHYLAIQK	1	Unmodified	1083.6441	0.64406526	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	4	2	4	3	43.39	38.698	2;3	9.9954E-06	20743	160513_QHF_FH_JSI9Kac_6	105.57	71.315			0.96218	0.8738	56.611	13	7	Median	0.83583	0.72096	80.817	4	2	Median	0.87128	1.0109	60.824	2	2	Median	0.99343	0.96672	68.731	4	2	Median	0.79395	0.8738	16.134	3	1	Median	973510000	526440000	447080000	166960000	72811000	94146000	179090000	107070000	72012000	307350000	153890000	153460000	320120000	192660000	127460000	55248	2612	52043	335224;335225;335226;335227;335228;335229;335230;335231;335232;335233;335234;335235;335236	452068;452069;452070;452071;452072;452073;452074;452075;452076;452077;452078;452079;452080;452081;452082;452083;452084	452077			17	
VLHYWTMR	0	Unmodified	1104.5539	0.55387005	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0		By MS/MS		By matching	16	0									2		1		1	50.092	40.909	3	0.0038752	22423	160513_QHF_FH_JSI10Kac_6	49.715	34.564			0.91766	1.0757	1.7911	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91485	1.0894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92047	1.0621	NaN	1	0	Median	20201000	11026000	9175600	0	0	0	17734000	9861000	7873000	0	0	0	2467200	1164600	1302600	55249	591	52044	335237;335238	452085;452086	452086			2	
VLIAAHGNSLR	0	Unmodified	1149.6618	0.66184059	1144	P18669;P15259	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	4	3	30.721	25.587	2;3	4.7188E-07	20708	160511_QHF_FH_JSI9i_3	116.05	97.268			0.82134	0.80289	22.437	15	1	Median	1.2978	1.0691	18.879	4	0	Median	0.57815	0.67069	8.5583	4	0	Median	0.82132	0.80279	2.4598	4	0	Median	0.85534	0.91715	18.212	3	1	Plateau	1497700000	793360000	704370000	742950000	357830000	385120000	494310000	285980000	208330000	187380000	107720000	79659000	73080000	41822000	31258000	55250	1144	52045	335239;335240;335241;335242;335243;335244;335245;335246;335247;335248;335249;335250;335251;335252;335253	452087;452088;452089;452090;452091;452092;452093;452094;452095;452096;452097;452098;452099;452100;452101;452102;452103;452104;452105;452106;452107	452095			21	
VLIALLAR	0	Unmodified	867.59057	0.59057313	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.875	69.469	2	1.7169E-16	38647	160513_QHF_FH_JSI10Kac_6	170.96	103.96			0.96176	0.95807	1.1398	4	0	Median	1.111	0.9514	NaN	1	0	Median	0.79354	0.94625	NaN	1	0	Median	1.0081	0.96939	NaN	1	0	Median	0.91751	0.96479	NaN	1	0	Median	1028000000	526540000	501440000	119480000	52801000	66677000	717240000	379010000	338240000	119480000	58302000	61182000	71777000	36431000	35347000	55251	3593	52046	335254;335255;335256;335257	452108;452109;452110;452111;452112	452112			5	
VLIDPVSVQDK	1	Unmodified	1211.6762	0.67615325	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	2	1	55.552	54.876	2	1.8366E-13	49707	160511_QHF_FH_JSI11i_1	152.28	141.75			0.86269	0.9696	18.646	6	0	Median	1.3337	1.0874	NaN	1	0	Median	0.77821	0.94608	5.5861	2	0	Median	0.84665	0.83008	34.516	2	0	Median	0.89862	0.95521	NaN	1	0	Median	3365800000	1636900000	1728900000	680780000	281850000	398930000	839590000	440560000	399020000	993020000	477490000	515540000	852410000	436990000	415410000	55252	1520	52047	335258;335259;335260;335261;335262;335263	452113;452114;452115;452116;452117;452118;452119;452120;452121;452122	452114			10	
VLIDSVLRK	1	Unmodified	1041.6546	0.65462995	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		47.891	46.621	2;3	8.3707E-05	38197	160511_QHF_FH_JSI9i_3	72.643	43.17			1.2518	1.1448	20.725	5	0	Median	1.3142	1.0748	6.2293	2	0	Median	1.0438	1.1933	5.8676	2	0	Median	1.8402	1.7551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	362470000	158430000	204040000	155830000	63894000	91939000	124790000	64140000	60645000	81848000	30393000	51455000	0	0	0	55253	3267	52048	335264;335265;335266;335267;335268	452123;452124;452125;452126;452127	452125			5	
VLIEGSINSVR	0	Unmodified	1185.6717	0.67173657	1905	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	15.2	0.433								3	1	1	1	1	1	57.559	47.229	2	0.04808	24076	160513_QHF_FH_JSI10Kac_5	38.303	14.535			1.1719	1.1348	14.529	4	1	Median	1.3555	1.1508	NaN	1	0	Median	0.81684	0.96592	NaN	1	0	Median	1.1252	1.119	NaN	1	1	Median	1.2205	1.3763	NaN	1	0	Median	35358000	16739000	18619000	11650000	4553500	7096100	10083000	5530500	4552200	8895300	4748000	4147300	4730100	1906600	2823500	55254	1905	52049	335269;335270;335271;335272	452128;452129	452129			2	
VLIEHGVQPSVIILLSLFSTPHGAK	1	Unmodified	2654.516	0.51595821	3993	Q96BW1	UPRT	Uracil phosphoribosyltransferase homolog	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	96.746	87.322	4	1.3333E-13	49676	160513_QHF_FH_JSI11Kac_6	98.7	91.825			1.0124	1.0126	3.7847	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1125	1.0401	NaN	1	0	Median	0.92127	0.98588	NaN	1	0	Median	233230000	111790000	121440000	0	0	0	0	0	0	189790000	88354000	101430000	43440000	23434000	20006000	55255	3993	52050	335273;335274	452130	452130			1	
VLIEILCTR	0	Unmodified	1115.6373	0.63726532	1170	P20073	ANXA7	Annexin A7	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	72.659	71.914	2	0.00091672	62275	160511_QHF_FH_JSI12i_3	71.692	58.655			0.77146	0.91001	47.496	4	0	Median	NaN	NaN	NaN	0	0	Median	0.81683	1.0082	NaN	1	0	Median	0.574	0.56591	NaN	1	0	Median	1.1101	1.2041	54.091	2	0	Median	180600000	91833000	88770000	0	0	0	27496000	17384000	10112000	48353000	31363000	16990000	104750000	43087000	61667000	55256	1170	52051	335275;335276;335277;335278	452131	452131			1	
VLIFDDSFEHEVWQDASSFR	0	Unmodified	2426.1179	0.11788989	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	93.216	84.865	3	2.1439E-26	45543	160513_QHF_FH_JSI12Kac_6	158.74	139.02			1.0187	1.0466	17.978	4	0	Median	1.1074	0.92946	NaN	1	0	Median	0.9021	1.0849	NaN	1	0	Median	1.4441	1.4086	NaN	1	0	Median	0.93715	1.0096	NaN	1	0	Median	572230000	294060000	278170000	188660000	100490000	88173000	146170000	82339000	63830000	94498000	36430000	58068000	142900000	74803000	68098000	55257	2307	52052	335279;335280;335281;335282	452132;452133;452134	452133			3	
VLIFPVVQQFTEAFVQALQIPDGPTSDSGFK	1	Unmodified	3377.7547	0.75474451	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	104.62	96.49	3;4	6.9872E-57	55128	160513_QHF_FH_JSI9Kac_6	164.62	159.01			1.1128	1.1441	10.649	6	2	Median	1.3441	1.1548	13.331	2	1	Median	0.97306	1.1441	4.9175	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1337	1.2437	16.776	2	1	Median	632570000	292750000	339820000	107570000	40803000	66765000	502100000	244520000	257580000	0	0	0	22896000	7423200	15473000	55258	4193	52053	335283;335284;335285;335286;335287;335288	452135;452136;452137;452138;452139;452140;452141;452142	452136			8	
VLIFSQMTK	1	Unmodified	1065.5893	0.5892525	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.57		3	4					2	7	4	5	4	3	67.122	62.001	2	0.00020074	32933	160513_QHF_FH_JSI9Kac_6	103.56	57.845			0.93867	1.0128	48.994	14	7	Median	1.4926	1.2247	74.907	4	1	Median	0.72705	0.8615	47.237	4	2	Median	1.196	1.1621	44.325	3	1	Median	0.70171	0.73196	29.713	3	3	Median	3381200000	2055400000	1325700000	540830000	274260000	266570000	706840000	460930000	245910000	935560000	457310000	478250000	1198000000	862950000	335020000	55259	2578;2318	52054	335289;335290;335291;335292;335293;335294;335295;335296;335297;335298;335299;335300;335301;335302;335303;335304	452143;452144;452145;452146;452147;452148;452149;452150;452151;452152;452153;452154;452155;452156;452157;452158;452159;452160;452161	452156			19	
VLIFSQMTK	1	Oxidation (M)	1081.5842	0.58416712	2578;2318	Q14839;Q12873	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.661							1	4	3	2	2	2	2	56.182	45.917	2	0.0066377	24775	160513_QHF_FH_JSI11Kac_6	60.118	42.753			1.2373	1.0639	14.537	8	0	Plateau	1.3612	1.1538	19.327	2	0	Median	0.92395	1.1181	25.842	2	0	Median	1.0609	1.0374	12.64	2	0	Median	0.93892	1.0431	10.655	2	0	Median	89297000	41478000	47819000	40286000	17399000	22887000	11465000	6350400	5114200	23299000	10306000	12993000	14247000	7422000	6825100	55260	2578;2318	52054	335305;335306;335307;335308;335309;335310;335311;335312	452162;452163;452164;452165;452166;452167;452168;452169;452170;452171;452172	452163		1911	11	
VLIFSQMTR	0	Oxidation (M)	1109.5903	0.59031513	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	55.632	46.037	2	0.004679	25002	160513_QHF_FH_JSI11Kac_6	63.48	8.9303			0.77973	0.84958	17.969	5	1	Median	0.83023	0.704	26.581	2	0	Median	0.77973	0.90111	NaN	1	0	Median	0.9131	0.89087	NaN	1	0	Median	0.7443	0.80955	NaN	1	1	Median	146490000	75143000	71345000	44951000	21387000	23565000	52740000	30788000	21952000	31751000	14892000	16859000	17045000	8075700	8969300	55261	403	52055	335313;335314;335315;335316;335317	452173;452174;452175;452176;452177;452178;452179	452174		165	7	
VLIFSQMTR	0	Unmodified	1093.5954	0.59540051	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.7	6.13			2						4	3	1	1	1	69.336	61.965	2	0.0035388	33970	160513_QHF_FH_JSI10Kac_6	73.26	57.628			1.225	1.2996	45.823	5	2	Median	1.6605	1.3677	88.377	2	1	Median	0.85163	1.023	NaN	1	0	Median	1.3904	1.3025	NaN	1	1	Median	1.225	1.2996	NaN	1	0	Median	758360000	368110000	390250000	241660000	107360000	134290000	264050000	148260000	115790000	198620000	87693000	110930000	54029000	24793000	29236000	55262	403	52055	335318;335319;335320;335321;335322;335323	452180;452181;452182;452183;452184;452185	452185			6	
VLIFSQMVR	0	Unmodified	1091.6161	0.61613595	183;5210;4860	O14646;Q9HCK8;Q8TD26;Q9P2D1	CHD1;CHD8;CHD6;CHD7	Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	5.6		1							4	1	1	1	2	71.27	64.265	2	0.0012092	36896	160513_QHF_FH_JSI9Kac_6	100.45	28.217			1.2397	1.2829	56.282	5	3	Median	1.3605	1.1662	NaN	1	1	Median	1.1421	1.3704	NaN	1	1	Median	1.2397	1.189	NaN	1	0	Median	2.1792	2.3657	86.548	2	1	Median	811430000	292840000	518590000	88229000	37609000	50620000	476770000	166370000	310410000	110350000	47898000	62449000	136080000	40965000	95114000	55263	183;4860;5210	52056	335324;335325;335326;335327;335328	452186;452187;452188;452189	452188			4	
VLIGENEK	1	Unmodified	900.49165	0.49164694	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.67	5.56	1	3				1	1				2	2	2	23.999	20.875	2	0.0038407	17337	160511_QHF_FH_JSI12i_2	70.525	17.888			0.97769	1.0757	56.908	6	1	Median	NaN	NaN	NaN	0	0	Median	1.1458	1.3669	78.126	2	1	Median	1.8228	1.7838	86.769	2	0	Median	0.97627	1.0757	0.1091	2	0	Median	614110000	302950000	311150000	0	0	0	300770000	143320000	157450000	157450000	79871000	77575000	155900000	79765000	76130000	55264	1857	52057	335329;335330;335331;335332;335333;335334	452190;452191;452192;452193;452194;452195	452190			6	
VLIGGDETPEGQR	0	Unmodified	1369.6838	0.68375782	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	1	2	34.971	32.929	2	5.538E-22	29654	160511_QHF_FH_JSI11i_1	171.85	152.76			1.0104	0.99997	10.068	7	0	Median	1.1212	0.92399	12.185	2	0	Median	0.80317	0.97308	15.789	2	0	Median	1.0104	0.99997	NaN	1	0	Median	0.93422	1.0068	11.238	2	0	Median	1530200000	737510000	792710000	343080000	141970000	201110000	476820000	247590000	229220000	437530000	204520000	233010000	272790000	143420000	129370000	55265	440	52058	335335;335336;335337;335338;335339;335340;335341	452196;452197;452198;452199;452200;452201;452202;452203;452204;452205;452206	452197			11	
VLIGHISK	1	Unmodified	865.53854	0.53853756	5376	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	24.402	23.737	2;3	0.0015662	19334	160511_QHF_FH_JSI9i_3	56.258	31.626			1.7064	1.6443	57.972	6	2	Median	2.2706	1.8313	22.648	2	0	Median	1.7002	1.9276	NaN	1	0	Median	1.0702	1.0094	NaN	1	0	Median	0.88133	0.88984	94.259	2	2	Median	1009100000	406740000	602310000	246360000	95053000	151300000	108360000	31151000	77209000	228060000	85706000	142350000	426280000	194830000	231450000	55266	5376	52059	335342;335343;335344;335345;335346;335347	452207;452208;452209;452210;452211;452212	452210			6	
VLIGVGK	1	Unmodified	684.45341	0.45341094	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		32.231	32.231	2	0.037209	27990	160511_QHF_FH_JSI11i_3	48.761	18.092			1.3287	1.2509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3287	1.2509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	227490000	101570000	125930000	0	0	0	0	0	0	227490000	101570000	125930000	0	0	0	55267	2665	52060	335348	452213	452213			1	
VLIHWMTLCQTQMK	1	Unmodified	1787.8885	0.88848776	3400	Q8IUX1	TMEM126B	Complex I assembly factor TMEM126B, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	77.889	69.553	3	1.9556E-24	36420	160513_QHF_FH_JSI12Kac_6	150.21	139.36			1.0291	1.1054	23.606	3	0	Median	NaN	NaN	NaN	0	0	Median	1.192	1.4051	NaN	1	0	Median	0.89008	0.87635	NaN	1	0	Median	1.0291	1.1054	NaN	1	0	Median	193780000	86265000	107520000	0	0	0	131020000	55458000	75565000	33304000	16949000	16356000	29454000	13858000	15596000	55268	3400	52061	335349;335350;335351	452214;452215;452216;452217	452215			4	
VLIIGGGDGGVLR	0	Unmodified	1224.719	0.71902112	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.42		4	2				1	4	3	3	4	4	3	71.078	65.212	2	1.6237E-05	35142	160513_QHF_FH_JSI11Kac_6	100.48	70.667			1.0937	1.0783	13.898	14	1	Median	1.3366	1.1381	10.795	3	0	Median	0.88598	1.0388	12.709	4	0	Median	1.0247	1.0082	13.527	4	1	Median	1.2604	1.2077	14.602	3	0	Plateau	2141100000	1068400000	1072700000	308570000	135110000	173450000	425070000	233970000	191100000	855510000	433790000	421720000	551950000	265490000	286460000	55269	1163	52062	335352;335353;335354;335355;335356;335357;335358;335359;335360;335361;335362;335363;335364;335365	452218;452219;452220;452221;452222;452223;452224;452225;452226;452227;452228;452229;452230;452231;452232;452233;452234	452223			17	
VLIIGSGGR	0	Unmodified	870.5287	0.52870115	1205	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.41	3	4	4				1	4	2	3	5	5	5	39.197	34.697	2	4.7665E-05	18933	160513_QHF_FH_JSI11Kac_6	121.99	35.903			0.9242	1.0021	21.569	17	1	Median	1.4108	1.1573	5.2981	3	0	Plateau	0.84473	1.0021	15.646	5	0	Median	0.78611	0.73607	32.389	5	1	Median	0.89617	0.91747	17.443	4	0	Median	4532300000	2119500000	2412800000	1005800000	349590000	656180000	1289000000	641930000	647020000	1184900000	609670000	575270000	1052600000	518310000	534320000	55270	1205	52063	335366;335367;335368;335369;335370;335371;335372;335373;335374;335375;335376;335377;335378;335379;335380;335381;335382;335383	452235;452236;452237;452238;452239;452240;452241;452242;452243;452244;452245;452246;452247;452248;452249;452250;452251;452252;452253;452254;452255	452241			20	
VLIKPEIQNNQK	2	Unmodified	1422.8195	0.81946344	4828	Q9HAU0	PLEKHA5	Pleckstrin homology domain-containing family A member 5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		31.768	31.768	3	0.024681	27580	160511_QHF_FH_JSI11i_3	39.424	18.124			0.39502	0.35594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39502	0.35594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33689000	21717000	11972000	0	0	0	0	0	0	33689000	21717000	11972000	0	0	0	55271	4828	52064	335384	452256	452256			1	
VLILGSGGLSIGQAGEFDYSGSQAVK	1	Unmodified	2552.3122	0.3122326	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.539	2	7	1							2	2	2	4	97.087	96.883	3	1.3639E-17	83903	160511_QHF_FH_JSI12i_3	105.72	101.76			0.86973	0.88601	21.841	9	6	Median	1.4775	1.2715	NaN	1	1	Median	0.61687	0.73232	26.03	2	0	Median	0.93453	0.94899	9.7117	2	2	Median	0.79085	0.85942	16.983	4	3	Median	287320000	150530000	136790000	38640000	12503000	26137000	54710000	32707000	22003000	67014000	34634000	32380000	126950000	70682000	56271000	55272	1372	52065	335385;335386;335387;335388;335389;335390;335391;335392;335393;335394	452257;452258;452259;452260;452261;452262;452263;452264;452265;452266;452267;452268;452269;452270;452271;452272;452273;452274;452275;452276;452277	452275			21	
VLILHLK	1	Unmodified	834.56911	0.5691094	3304	Q86T82	USP37	Ubiquitin carboxyl-terminal hydrolase 37	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7.33	6.13			2						1		1		2	56.004	47.465	3	0.023147	21695	160511_QHF_FH_JSI12i_3	31.289	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3626000	0	3626000	0	0	0	3626000	0	3626000	0	0	0	0	0	0	55273	3304	52066	335395;335396;335397	452278;452279;452280	452278			3	
VLILLGGNALSPK	1	Unmodified	1293.802	0.80202247	2600	Q15013	MAD2L1BP	MAD2L1-binding protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				83.813	82.53	2	0.0012527	67840	160511_QHF_FH_JSI9i_3	61.353	50.202			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55274	2600	52067	335398	452281	452281			1	
VLIMDHPSMR	0	Unmodified	1197.5998	0.59983396	2716	Q15833	STXBP2	Syntaxin-binding protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.75	0.433		1	3							1		1	2	38.29	37.947	2;3	0.0012306	32236	160511_QHF_FH_JSI12i_3	54.259	46.155			1.5921	1.5633	13.014	4	1	Median	2.1184	1.8334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6595	1.5939	NaN	1	0	Median	1.4056	1.4313	9.739	2	1	Median	373890000	141530000	232370000	42861000	17509000	25352000	0	0	0	168810000	53374000	115440000	162220000	70642000	91581000	55275	2716	52068	335399;335400;335401;335402	452282;452283;452284;452285	452284			4	
VLIMHGGLFSEDGVTLDDIR	0	Unmodified	2186.1042	0.10415408	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	92.337	92.315	3	4.2084E-08	80114	160511_QHF_FH_JSI12i_3	92.993	68.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55276	1793	52069	335403;335404	452286;452287	452287			2	
VLIMHGGLFSEDGVTLDDIRK	1	Unmodified	2314.1991	0.1991171	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		5.17	4.84			5						1	2	3	1		84.115	82.367	4	1.1322E-47	41058	160513_QHF_FH_JSI10Kac_6	178.75	160.21			0.79818	0.77082	41.546	6	0	Median	1.0482	0.87374	43.285	2	0	Median	0.52029	0.61245	25.65	3	0	Median	1.7108	1.6118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242550000	129390000	113160000	26382000	13098000	13284000	139760000	85723000	54036000	76411000	30572000	45839000	0	0	0	55277	1793	52070	335405;335406;335407;335408;335409;335410	452288;452289;452290;452291	452291			3	
VLIPHLVIR	0	Unmodified	1058.6964	0.69643518	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	63.462	63.176	3	0.003702	54497	160511_QHF_FH_JSI12i_3	36.211	22.004			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55278	2386	52071	335411	452292	452292			1	
VLIPIHEANR	0	Unmodified	1160.6666	0.66659162	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	38.561	37.722	3	0.00092756	32714	160511_QHF_FH_JSI11i_3	48.698	46.415			0.42839	0.4541	94.615	6	0	Median	0.68851	0.59009	NaN	1	0	Median	0.13359	0.15803	134.99	2	0	Median	0.53944	0.50233	NaN	1	0	Median	0.36783	0.38532	100.56	2	0	Median	514740000	339260000	175480000	38880000	23353000	15527000	121260000	100480000	20782000	158190000	90023000	68163000	196410000	125400000	71005000	55279	4181	52072	335412;335413;335414;335415;335416;335417	452293;452294;452295;452296;452297;452298;452299;452300	452293			8	
VLIPLHTVR	0	Unmodified	1046.66	0.66004968	2735	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	47.108	45.969	3	0.00132	37698	160511_QHF_FH_JSI9i_3	47.187	42.831			0.98567	1.0853	25.523	3	0	Median	1.3358	1.0853	NaN	1	0	Median	0.98567	1.1286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69275	0.71225	NaN	1	0	Median	176680000	91906000	84778000	79006000	32713000	46293000	47469000	26090000	21379000	0	0	0	50209000	33104000	17105000	55280	2735	52073	335418;335419;335420	452301;452302;452303	452301			3	
VLIPMHTAK	1	Unmodified	1008.579	0.57902216	2640	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	31.765	31.05	3	0.0023289	26006	160511_QHF_FH_JSI12i_3	44.203	32.49			1.0443	1.0337	11.646	4	0	Median	1.217	0.98552	NaN	1	0	Median	0.93593	1.0842	NaN	1	0	Median	0.95688	0.89136	NaN	1	0	Median	1.1397	1.1654	NaN	1	0	Median	339390000	178810000	160570000	36316000	15252000	21064000	69521000	36359000	33162000	85632000	53554000	32078000	147920000	73649000	74270000	55281	2640	52074	335421;335422;335423;335424;335425	452304;452305;452306;452307;452308	452308			5	
VLIPVFALGR	0	Unmodified	1083.6805	0.68045077	2959	Q5TA45	CPSF3L	Integrator complex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	95.773	95.399	2	0.0013031	82608	160511_QHF_FH_JSI12i_3	66.682	38.17			0.97385	1.0406	14.676	5	2	Median	1.1733	0.98368	NaN	1	1	Median	0.95325	1.0922	6.8446	2	1	Median	1.2024	1.1438	NaN	1	0	Median	0.76817	0.80202	NaN	1	0	Median	82971000	40783000	42187000	19275000	6132800	13142000	20727000	10710000	10017000	25184000	12372000	12811000	17785000	11569000	6216800	55282	2959	52075	335426;335427;335428;335429;335430	452309;452310;452311;452312;452313;452314	452314			6	
VLIQKNLGPK	2	Acetyl (K)	1150.7074	0.7073938	1440	P35611	ADD1	Alpha-adducin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		59.964	48.929	2	0.04598	27905	160513_QHF_FH_JSI11Kac_4	50.607	20.352			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1531500	1531500	0	0	0	0	0	0	0	1531500	1531500	0	0	0	0	55283	1440	52076	335431	452315	452315			1	
VLIQVGYEPLPPTIGR	0	Unmodified	1750.9982	0.99815609	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	2	1	2	87.981	87.373	2	9.4092E-17	75571	160511_QHF_FH_JSI12i_2	122.42	106.17			1.0178	1.1186	10.638	5	1	Median	1.457	1.2922	NaN	1	0	Median	0.89789	1.1289	16.376	2	1	Median	1.1023	1.1186	NaN	1	0	Median	1.0178	1.0848	NaN	1	0	Median	98703000	49890000	48814000	15852000	7772900	8079200	31412000	16244000	15169000	28244000	12625000	15620000	23195000	13249000	9946200	55284	5717	52077	335432;335433;335434;335435;335436;335437	452316;452317;452318;452319;452320;452321;452322;452323;452324;452325	452319			10	
VLISDSLDPCCR	0	Unmodified	1433.6643	0.66428471	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	56.664	56.174	2	0.00012432	50860	160511_QHF_FH_JSI11i_1	85.377	79.837			0.84122	1.091	29.453	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0173	1.1872	NaN	1	0	Median	0.6956	0.68693	NaN	1	0	Median	1.0533	1.091	NaN	1	0	Median	216160000	121510000	94651000	0	0	0	72350000	44247000	28103000	92485000	48662000	43823000	51325000	28600000	22725000	55285	309	52078	335438;335439;335440	452326;452327;452328;452329	452326			4	
VLISDSLDPCCRK	1	Unmodified	1561.7592	0.75924773	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								1	4	2	46.837	46.557	2;3	8.2403E-05	41029	160511_QHF_FH_JSI11i_3	113.12	87.899			1.0987	1.172	26.139	7	4	Median	NaN	NaN	NaN	0	0	Median	1.3776	1.7069	NaN	1	1	Median	0.95827	0.92218	23.326	4	3	Median	1.1247	1.1815	1.144	2	0	Median	1649500000	856710000	792760000	0	0	0	21671000	9582700	12088000	1069800000	559580000	510270000	557960000	287550000	270410000	55286	309	52079	335441;335442;335443;335444;335445;335446;335447	452330;452331;452332;452333;452334;452335;452336;452337;452338	452331			9	
VLISSLK	1	Unmodified	758.49019	0.49019038	3553	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.78	6.3		4	2					1	2	3	1	3	2	42.235	38.533	2	0.039053	33660	160511_QHF_FH_JSI11i_3	47.849	22.85			1.1192	1.0573	29.576	9	0	Median	0.69398	0.6028	51.999	3	0	Plateau	0.79066	0.97981	NaN	1	0	Median	1.1624	1.0907	14.185	3	0	Plateau	1.0248	1.0953	23.4	2	0	Median	1085300000	498670000	586640000	135770000	67805000	67963000	166640000	93897000	72739000	400830000	177820000	223010000	382080000	159150000	222930000	55287	3553	52080	335448;335449;335450;335451;335452;335453;335454;335455;335456	452339;452340;452341;452342;452343;452344	452339			6	
VLISSLQDCLHGIESK	1	Unmodified	1797.9295	0.92948418	2746	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.74	73.449	3	1.0069E-05	63752	160511_QHF_FH_JSI12i_3	107.34	96.871			0.56957	0.581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56957	0.581	NaN	1	1	Median	246030000	137730000	108290000	0	0	0	0	0	0	0	0	0	246030000	137730000	108290000	55288	2746	52081	335457	452345	452345			1	
VLISTDVWAR	0	Unmodified	1158.6397	0.63970816	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	70.679	65.352	2	0.00026475	56743	160511_QHF_FH_JSI12i_2	79.906	47.066			0.86225	0.88911	14.926	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83799	0.80006	NaN	1	1	Median	0.88721	0.98809	NaN	1	0	Median	463580000	237240000	226340000	0	0	0	0	0	0	47589000	26995000	20594000	415990000	210250000	205740000	55289	1481	52082	335458;335459	452346;452347;452348	452346			3	
VLITDVNDNSPR	0	Unmodified	1341.6888	0.6888432	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.046	39.544	2	0.0056951	35913	160511_QHF_FH_JSI12i_1	53.124	25.795			0.63295	0.70369	13.605	2	0	Median	NaN	NaN	NaN	0	0	Median	0.54277	0.63915	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73811	0.77475	NaN	1	0	Median	166390000	104310000	62075000	0	0	0	89064000	63888000	25176000	0	0	0	77325000	40426000	36899000	55290	401	52083	335460;335461;335462	452349;452350	452350			2	
VLITENDVK	1	Unmodified	1029.5706	0.57062555	4235	Q96S55	WRNIP1	ATPase WRNIP1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	35.277	34.673	2	0.0031278	31111	160511_QHF_FH_JSI11i_1	61.679	38.608			0.81613	0.8185	22.659	4	0	Median	0.81282	0.66314	NaN	1	0	Median	0.96271	1.1451	NaN	1	0	Median	0.81944	0.80154	NaN	1	0	Median	0.80947	0.83582	NaN	1	0	Median	318810000	163340000	155470000	61454000	36990000	24464000	76536000	42228000	34308000	85189000	42420000	42770000	95635000	41704000	53930000	55291	4235	52084	335463;335464;335465;335466	452351;452352	452351			2	
VLITTDLLAR	0	Unmodified	1113.6758	0.67575932	1917;2519	P60842;Q14240	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.87	6.53	3	4	4				2	7	3	4	8	5	6	76.202	70.576	2	1.1359E-09	63966	160511_QHF_FH_JSI9i_2	135.83	78.549			0.93413	1.0061	13.383	23	0	Median	1.263	1.0454	7.0273	4	0	Median	0.89345	1.0771	8.1412	8	0	Median	0.93413	0.91581	6.5742	5	0	Median	0.86328	0.91929	17.988	6	0	Median	9693700000	4870800000	4822900000	1624300000	718800000	905480000	2204200000	1205800000	998350000	2911900000	1476300000	1435600000	2953400000	1469900000	1483500000	55292	1917;2519	52085	335467;335468;335469;335470;335471;335472;335473;335474;335475;335476;335477;335478;335479;335480;335481;335482;335483;335484;335485;335486;335487;335488;335489	452353;452354;452355;452356;452357;452358;452359;452360;452361;452362;452363;452364;452365;452366;452367;452368;452369;452370;452371;452372;452373;452374;452375;452376;452377;452378;452379;452380;452381;452382;452383;452384;452385;452386;452387;452388;452389;452390;452391;452392	452375			40	
VLITTLITAGR	0	Unmodified	1156.718	0.71795849	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.325	73.684	2	0.0024669	40242	160513_QHF_FH_JSI10Kac_6	70.552	47.839			0.81769	0.96247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81769	0.96247	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	200000000	124560000	75439000	0	0	0	200000000	124560000	75439000	0	0	0	0	0	0	55293	4856	52086	335490	452393;452394	452394			2	
VLIVGAPIWFR	0	Unmodified	1269.7598	0.75976372	1564	P43378	PTPN9	Tyrosine-protein phosphatase non-receptor type 9	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		91.337	82.299	2	0.0086022	46209	160513_QHF_FH_JSI11Kac_6	56.014	35.113			0.98825	0.88752	43.985	2	0	Median	0.76772	0.65029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2721	1.2113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93178000	41298000	51881000	41643000	22485000	19159000	0	0	0	51535000	18813000	32722000	0	0	0	55294	1564	52087	335491;335492	452395	452395			1	
VLIVHTNHLTSLLPK	1	Unmodified	1684.0036	0.0035758205	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	66.772	65.956	4	0.0066482	56275	160511_QHF_FH_JSI12i_3	47.301	36.246			0.9149	0.96418	17.052	4	4	Median	1.3128	1.0699	NaN	1	1	Median	0.81923	0.96167	NaN	1	1	Median	1.0217	0.9667	NaN	1	1	Median	0.70097	0.72006	NaN	1	1	Median	141060000	74140000	66923000	31302000	15942000	15360000	26895000	13229000	13666000	17383000	9391900	7991000	65483000	35577000	29906000	55295	3150	52088	335493;335494;335495;335496	452396;452397;452398;452399	452399			4	
VLIVSEDPELPYMRPPLSK	1	Unmodified	2182.1708	0.17077708	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		6	8							3	4	4	3	87.797	87.279	2;3;4	1.5436E-24	75753	160511_QHF_FH_JSI12i_3	154.12	139.03			0.99774	1.0081	13.396	14	2	Median	1.1873	1.016	8.555	3	0	Plateau	0.92071	1.0925	16.814	4	1	Median	1.0655	1.0552	14.577	4	1	Median	0.98752	1.0002	5.6652	3	0	Plateau	2507000000	1256100000	1250900000	206160000	96731000	109430000	350000000	189600000	160390000	1073900000	522780000	551160000	876940000	447030000	429910000	55296	736	52089	335497;335498;335499;335500;335501;335502;335503;335504;335505;335506;335507;335508;335509;335510	452400;452401;452402;452403;452404;452405;452406;452407;452408;452409;452410;452411;452412;452413;452414;452415;452416;452417;452418;452419;452420;452421;452422;452423;452424;452425;452426;452427;452428;452429;452430;452431;452432;452433	452431			34	
VLIVSEDPELPYMRPPLSK	1	Oxidation (M)	2198.1657	0.1656917	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	75.14	74.855	3	0.00027712	65035	160511_QHF_FH_JSI12i_3	78.012	66.955			1.0144	1.0173	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0144	1.0173	NaN	1	1	Median	105720000	55141000	50583000	0	0	0	0	0	0	0	0	0	105720000	55141000	50583000	55297	736	52089	335511	452434	452434		253	1	
VLIVVPFR	0	Unmodified	941.60622	0.60622319	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	80.651	76.839	2	0.00051498	40934	160513_QHF_FH_JSI10Kac_6	111.69	104.02			1.0723	1.0726	15.174	13	1	Median	1.1122	0.94598	8.1081	4	1	Median	0.83467	1.0029	9.3964	3	0	Median	1.2644	1.1854	8.3665	3	0	Median	1.121	1.1907	26.1	3	0	Median	950270000	451500000	498770000	185600000	78645000	106960000	338360000	185080000	153280000	269340000	113530000	155810000	156960000	74238000	82722000	55298	3022	52090	335512;335513;335514;335515;335516;335517;335518;335519;335520;335521;335522;335523;335524	452435;452436;452437;452438;452439;452440;452441;452442;452443;452444;452445;452446;452447;452448;452449;452450	452450			16	
VLIYSVQPYTK	1	Unmodified	1309.7282	0.72818882	1776	P52630	STAT2	Signal transducer and activator of transcription 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		69.66	59.314	2	0.0037907	32032	160513_QHF_FH_JSI11Kac_6	72.643	50.557			0.98065	1.0434	36.787	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.90054	1.0872	NaN	1	0	Median	0.79294	0.76693	43.529	2	1	Median	NaN	NaN	NaN	0	0	Median	25230000	14451000	10780000	0	0	0	7329700	4403300	2926400	17901000	10047000	7853400	0	0	0	55299	1776	52091	335525;335526;335527	452451;452452;452453	452451			3	
VLKIHEK	2	Acetyl (K)	907.5491	0.54910224	2067	P67812;P0C7V7	SEC11A;SEC11B	Signal peptidase complex catalytic subunit SEC11A;Putative signal peptidase complex catalytic subunit SEC11B	yes	no	1	0	0	1			By MS/MS		16	0									1			1		23.57	14.467	2	0.060518	9230	160513_QHF_FH_JSI11Kac_6	61.999	26.119			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1856500	1856500	0	0	0	0	0	0	0	1856500	1856500	0	0	0	0	55300	2067	52092	335528	452454	452454			1	
VLKNHELSGLNK	2	Acetyl (K)	1392.7725	0.77251325	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.128	31.556	3	0.0027597	17358	160513_QHF_FH_JSI11Kac_6	62.088	44.876			0.095122	0.096082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.095122	0.096082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4748500	4324800	423690	0	0	0	0	0	0	4748500	4324800	423690	0	0	0	55301	3250	52093	335529	452455	452455	2813		1	
VLKPEWFR	1	Unmodified	1073.6022	0.60220045	3223	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		49.77	48.715	3	0.0036393	41033	160511_QHF_FH_JSI10i_3	56.81	39.57			1.0675	1.0043	10.657	3	0	Median	1.2541	0.99955	NaN	1	0	Median	1.0456	1.205	NaN	1	0	Median	1.0675	1.0043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	375550000	196700000	178850000	128000000	61480000	66525000	125590000	73771000	51816000	121950000	61449000	60504000	0	0	0	55302	3223	52094	335530;335531;335532	452456;452457;452458;452459;452460;452461	452459			6	
VLKPGGLLK	2	Unmodified	923.61679	0.61678788	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	32.367	32.274	3	0.060268	27371	160511_QHF_FH_JSI12i_3	28.696	4.6664			0.30085	0.31837	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30085	0.31837	NaN	1	1	Median	70441000	49423000	21019000	0	0	0	0	0	0	0	0	0	70441000	49423000	21019000	55303	305	52095	335533	452462	452462			1	
VLKQVHPDTGISSK	2	Acetyl (K)	1549.8464	0.84640648	1235;1902;2915	Q16778;P23527;P06899;Q8N257;P33778;Q96A08;Q99877;Q93079;P62807;P58876;Q99880;O60814;P57053;Q99879;Q5QNW6	HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BH;HIST1H2BC;HIST1H2BD;HIST1H2BL;HIST1H2BK;H2BFS;HIST1H2BM;HIST2H2BF	Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-B;Histone H2B type 1-A;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-L;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-M;Histone H2B type 2-F	no	no	1	0	0	1		By matching	By MS/MS	By matching	14.6	0.49							2	3			1	3	1	42.909	32.845	2;3	0.00051357	18642	160513_QHF_FH_JSI11Kac_5	68.944	56.798			0.26635	0.27841	109.58	4	0	Median	NaN	NaN	NaN	0	0	Median	1.9733	2.3601	NaN	1	0	Median	0.25241	0.24881	3.5264	2	0	Median	0.2752	0.30386	NaN	1	0	Median	167840000	117140000	50693000	0	0	0	27136000	7917200	19219000	130840000	101540000	29300000	9857400	7683600	2173900	55304	1235;1902;2915	52096	335534;335535;335536;335537;335538	452463;452464	452464	1123		2	
VLLAAAVCTK	1	Unmodified	1044.6002	0.60015154	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.497								5	4	3	2	2	2	55.582	45.514	2	0.0010774	24731	160513_QHF_FH_JSI11Kac_6	84.213	57.61			1.0704	1.0909	15.574	9	5	Median	1.4076	1.2033	13.862	3	3	Plateau	0.9664	1.1448	5.0013	2	0	Median	0.93801	0.91973	19.341	2	1	Median	1.1158	1.2183	15.621	2	1	Median	175830000	88813000	87015000	30992000	13724000	17268000	46716000	23659000	23057000	86302000	46711000	39591000	11817000	4718700	7098500	55305	1620	52097	335539;335540;335541;335542;335543;335544;335545;335546;335547	452465;452466;452467;452468;452469;452470;452471;452472;452473;452474;452475;452476	452468			12	
VLLALHDR	0	Unmodified	935.55525	0.55525025	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		32.32	31.381	3	0.0015662	26365	160511_QHF_FH_JSI10i_3	56.258	47.395			1.3663	1.2153	14.592	3	0	Plateau	1.2316	1.0067	NaN	1	0	Median	1.0336	1.2153	NaN	1	0	Median	1.45	1.3417	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	300300000	134990000	165320000	108930000	51575000	57359000	76894000	40916000	35978000	114480000	42495000	71982000	0	0	0	55306	5241	52098	335548;335549;335550	452477;452478;452479;452480	452478			4	
VLLATLSIPITPER	0	Unmodified	1521.913	0.91302948	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.82	1	4	3						6	2	4	5	3	92.027	87.884	2;3	1.9988E-65	82223	160511_QHF_FH_JSI12i_2	227.94	215.36			0.97118	1.088	21.627	13	3	Median	1.3411	1.1453	1.5962	2	0	Median	1.0458	1.2548	9.6235	3	0	Median	1.073	1.0278	16.009	5	3	Linear	0.99703	1.0479	33.251	3	0	Plateau	1401200000	677290000	723870000	201720000	80645000	121080000	231840000	115900000	115940000	689210000	343130000	346080000	278390000	137620000	140770000	55307	2502	52099	335551;335552;335553;335554;335555;335556;335557;335558;335559;335560;335561;335562;335563;335564	452481;452482;452483;452484;452485;452486;452487;452488;452489;452490;452491;452492;452493;452494;452495;452496;452497;452498;452499;452500;452501;452502	452484			22	
VLLATLSIPITPERTDIAR	0	Unmodified	2078.2099	0.20993978	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			92.471	91.425	3	0.00015903	74832	160511_QHF_FH_JSI9i_3	73.464	59.632			1.2924	1.4855	7.9473	3	3	Plateau	1.6325	1.3334	NaN	1	1	Median	1.2033	1.3748	10.959	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87596000	35849000	51747000	22260000	7535200	14724000	65336000	28314000	37023000	0	0	0	0	0	0	55308	2502	52100	335565;335566;335567	452503;452504;452505	452505			3	
VLLDAPCSGTGVISK	1	Unmodified	1515.7967	0.79667909	1580	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	57.37	56.88	2	0.00017875	51300	160511_QHF_FH_JSI10i_1	106.26	72.297			0.92496	0.87169	24.66	3	3	Median	NaN	NaN	NaN	0	0	Median	1.0538	1.2498	NaN	1	1	Median	0.92496	0.87169	NaN	1	1	Median	0.72937	0.77974	NaN	1	1	Median	184160000	97797000	86368000	0	0	0	59106000	28280000	30826000	64580000	33626000	30954000	60479000	35890000	24588000	55309	1580	52101	335568;335569;335570	452506;452507;452508	452508			3	
VLLDDTQSEAAR	0	Unmodified	1316.6572	0.65720872	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	30.695	29.86	2	0.0019064	26538	160511_QHF_FH_JSI11i_1	59.067	53.586			1.0047	0.91826	14.153	4	3	Median	1.1697	0.97107	12.793	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78577	0.75797	NaN	1	0	Median	0.9416	0.95052	NaN	1	1	Median	407720000	199640000	208080000	184320000	76336000	107980000	0	0	0	108890000	59105000	49784000	114510000	64197000	50313000	55310	2574	52102	335571;335572;335573;335574	452509;452510;452511;452512	452509			4	
VLLDEKLSSEEFHR	1	Unmodified	1700.8733	0.87334951	5769				yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.769	5	5	3							2	3	5	3	93.699	93.32	2	0.0013654	84449	160511_QHF_FH_JSI10i_1	90.629	24.195	+		1.0245	0.9999	10.015	13	0	Median	1.0431	0.88953	22.812	2	0	Median	0.84033	0.99882	9.9383	3	0	Plateau	1.0304	1.0619	4.5152	5	0	Linear	0.95846	1.0145	3.5882	3	0	Plateau	2166700000	1141500000	1025200000	285670000	114020000	171650000	443530000	241630000	201900000	790060000	418510000	371550000	647420000	367340000	280080000	55311	5769	52103	335575;335576;335577;335578;335579;335580;335581;335582;335583;335584;335585;335586;335587	452513;452514;452515;452516;452517;452518;452519;452520	452519			8	
VLLDFLDQHPFSFTPLIQR	0	Unmodified	2285.2208	0.22083882	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.28	102.09	3	0.00092718	83036	160511_QHF_FH_JSI9i_3	45.916	34.456			1.4664	1.1914	NaN	1	0	Median	1.4664	1.1914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26691000	14672000	12019000	26691000	14672000	12019000	0	0	0	0	0	0	0	0	0	55312	5323	52104	335588	452521	452521			1	
VLLDGVQNPR	0	Unmodified	1109.6193	0.61930707	780	P01024	C3	Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha' chain;Complement C3c alpha' chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha' chain fragment 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.668	94.324	2	0.044848	85702	160511_QHF_FH_JSI11i_1	36.701	28.989			0.98475	0.98325	13.134	4	0	Median	1.1672	0.97714	NaN	1	0	Median	0.95379	1.1329	NaN	1	0	Median	1.0167	0.9894	NaN	1	0	Median	0.79353	0.8223	NaN	1	0	Median	165840000	76507000	89331000	38047000	18120000	19927000	43285000	20668000	22617000	43161000	15904000	27257000	41344000	21814000	19530000	55313	780	52105	335589;335590;335591;335592	452522	452522			1	
VLLDHGAGINTHSNEFK	1	Unmodified	1850.9275	0.92751034	3434	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	38.688	38.598	3	2.1982E-06	32885	160511_QHF_FH_JSI12i_3	95.767	72.286			0.92802	0.91142	22.378	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82338	0.77803	NaN	1	0	Median	1.046	1.0677	NaN	1	0	Median	170360000	85586000	84773000	0	0	0	0	0	0	60350000	32226000	28124000	110010000	53360000	56648000	55314	3434	52106	335593;335594	452523;452524;452525;452526	452526			4	
VLLDIFTGVR	0	Unmodified	1131.6652	0.66519463	1694	P49916	LIG3	DNA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	89.718	89.129	2	0.055886	78470	160511_QHF_FH_JSI11i_2	34.387	18.053			1.0255	1.0754	5.6206	4	0	Median	1.259	1.0679	NaN	1	0	Median	0.9834	1.1812	NaN	1	0	Median	1.0693	1.083	NaN	1	0	Median	0.95892	1.0362	NaN	1	0	Median	61857000	31083000	30775000	9335200	4625000	4710100	15033000	7582900	7450200	19816000	8983300	10833000	17673000	9891500	7781300	55315	1694	52107	335595;335596;335597;335598	452527	452527			1	
VLLDNVENK	1	Unmodified	1042.5659	0.56587452	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.433	32.83	2	0.010901	29649	160511_QHF_FH_JSI12i_1	49.423	18.119			0.74637	0.75862	5.5202	4	0	Median	0.9769	0.81547	NaN	1	0	Median	0.61379	0.71453	NaN	1	0	Median	0.79197	0.76905	NaN	1	0	Median	0.7034	0.74833	NaN	1	0	Median	1131500000	642910000	488640000	144580000	71627000	72953000	375690000	242080000	133610000	358910000	233750000	125160000	252370000	95457000	156910000	55316	3922	52108	335599;335600;335601;335602	452528	452528			1	
VLLDQLR	0	Unmodified	855.5178	0.51780212	4877	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	45.491	44.632	2	0.037209	38276	160511_QHF_FH_JSI12i_2	48.761	14.056			1.0479	1.0646	7.7646	5	0	Median	1.2041	1.0264	NaN	1	0	Median	0.87418	1.0682	NaN	1	0	Median	1.1694	1.15	11.748	2	0	Median	0.95018	1.0646	NaN	1	0	Median	844230000	407560000	436670000	138330000	60638000	77691000	202430000	113380000	89044000	340980000	160510000	180460000	162490000	73027000	89467000	55317	4877	52109	335603;335604;335605;335606;335607	452529	452529			1	
VLLEAGEGLVTITPTTGSDGRPDAR	0	Unmodified	2524.3133	0.31329523	5119	Q9NY33	DPP3	Dipeptidyl peptidase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	75.785	75.025	3	5.7115E-28	67055	160511_QHF_FH_JSI11i_3	140.17	118.16			0.86033	0.8991	12.474	2	1	Median	1.1085	0.98201	NaN	1	0	Median	0.66774	0.8232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95517000	60202000	35314000	48431000	25197000	23233000	47086000	35005000	12081000	0	0	0	0	0	0	55318	5119	52110	335608;335609;335610;335611;335612;335613	452530;452531;452532;452533;452534;452535	452530			6	
VLLESEQFLTELTR	0	Unmodified	1676.8985	0.89850163	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	4.11	3	5	2						1	2	3	3	3	96.921	95.877	2;3	1.7611E-65	83951	160511_QHF_FH_JSI12i_2	265.6	181.39			0.83612	0.83045	43.979	11	2	Median	0.99662	0.83853	1.4241	2	0	Median	0.68144	0.82173	6.4055	3	1	Median	0.75123	0.77056	81.103	3	0	Plateau	0.83612	0.92169	27.139	3	1	Median	4489200000	2407500000	2081600000	862160000	392720000	469430000	1044500000	646700000	397830000	1484000000	815670000	668320000	1098500000	552450000	546070000	55319	1466	52111	335614;335615;335616;335617;335618;335619;335620;335621;335622;335623;335624	452536;452537;452538;452539;452540;452541;452542;452543;452544;452545;452546;452547;452548;452549;452550	452538			14	
VLLESEQFLTELTRLFQK	1	Unmodified	2193.2045	0.20452005	1466	P37108	SRP14	Signal recognition particle 14 kDa protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	102.73	102.74	3	0.0055075	89480	160511_QHF_FH_JSI12i_3	47.752	35.449			0.40764	0.40848	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40764	0.40848	NaN	1	1	Median	93152000	68137000	25016000	0	0	0	0	0	0	0	0	0	93152000	68137000	25016000	55320	1466	52112	335625	452551	452551			1	
VLLFNATGDRDPAALLK	1	Unmodified	1813.0098	0.0097834104	2235	Q05932	FPGS	Folylpolyglutamate synthase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	82.078	81.974	3	0.0042406	73230	160511_QHF_FH_JSI11i_3	42.813	31.551			0.60013	0.5912	5.7577	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65226	0.61577	NaN	1	0	Median	0.55217	0.56761	NaN	1	0	Median	183800000	114190000	69611000	0	0	0	0	0	0	124130000	78002000	46126000	59672000	36188000	23484000	55321	2235	52113	335626;335627	452552	452552			1	
VLLFSLPHPEALLAQQPPDAVKPAIYK	2	Unmodified	2954.6634	0.66335073	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	101.05	100.99	4	9.7641E-06	90048	160511_QHF_FH_JSI11i_3	52.79	46.949			0.87797	0.90149	18.578	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0154	1.1736	NaN	1	0	Median	0.88005	0.81997	NaN	1	0	Median	0.87797	0.90149	NaN	1	0	Median	417940000	210810000	207120000	0	0	0	68921000	36718000	32203000	141090000	65244000	75848000	207930000	108850000	99074000	55322	3756	52114	335628;335629;335630	452553;452554;452555	452553			3	
VLLFSQSR	0	Unmodified	948.53927	0.53926584	2210	Q03468	ERCC6	DNA excision repair protein ERCC-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			47.14	45.554	2	0.054003	37252	160511_QHF_FH_JSI9i_3	36.395	14.264			0.92407	0.90127	13.066	2	0	Median	1.2194	0.98851	NaN	1	0	Median	0.70028	0.82173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	45401000	23032000	22370000	18454000	7932200	10522000	26947000	15099000	11847000	0	0	0	0	0	0	55323	2210	52115	335631;335632	452556	452556			1	
VLLGETGK	1	Unmodified	815.47527	0.4752686	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.44	6.46	4	3	2				3	3	1	3	4	4	5	27.343	22.83	2	0.002249	14428	160513_QHF_FH_JSI11Kac_4	91.626	38.072			1.011	1.3143	15.045	16	0	Linear	1.6923	1.3943	3.2992	3	0	Plateau	0.99179	1.1579	11.637	4	0	Linear	1.2206	1.2094	16.099	4	0	Linear	0.95656	1.0433	8.4634	5	0	Median	9202200000	4126400000	5075800000	2015400000	761740000	1253700000	1677500000	795290000	882180000	3169900000	1405800000	1764200000	2339400000	1163600000	1175800000	55324	1996	52116	335633;335634;335635;335636;335637;335638;335639;335640;335641;335642;335643;335644;335645;335646;335647;335648	452557;452558;452559;452560;452561;452562;452563;452564;452565;452566;452567;452568;452569;452570;452571;452572;452573	452565			17	
VLLGFSSDESDVEASPR	0	Unmodified	1806.8636	0.86357268	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									1	2	1		65.272	64.663	2	1.1042E-05	58521	160511_QHF_FH_JSI10i_1	86.772	77.34			0.84437	0.90861	13.885	3	3	Plateau	1.1383	0.90861	NaN	1	1	Median	0.67473	0.7678	NaN	1	1	Median	1.0567	1.0113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58881000	32096000	26785000	11413000	5721300	5691400	26172000	18157000	8014800	21297000	8218000	13079000	0	0	0	55325	5538	52117	335649;335650;335651;335652	452574;452575;452576;452577	452576			4	
VLLGQDEPLIHVFAK	1	Unmodified	1677.9454	0.94539224	4410	Q9BT73	PSMG3	Proteasome assembly chaperone 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							2	3	3	3	87.187	86.666	2;3	2.7425E-15	77216	160511_QHF_FH_JSI11i_3	133.14	122.08			1.1275	1.0925	12.476	11	1	Median	1.3432	1.1223	11.182	2	0	Median	0.82895	1.0095	17.308	3	1	Median	1.1275	1.0501	6.2692	3	0	Plateau	1.0978	1.0925	18.155	3	0	Median	1452500000	657510000	795000000	118880000	51863000	67018000	173910000	87145000	86761000	468590000	217130000	251460000	691130000	301370000	389760000	55326	4410	52118	335653;335654;335655;335656;335657;335658;335659;335660;335661;335662;335663	452578;452579;452580;452581;452582;452583;452584;452585;452586;452587;452588;452589;452590;452591;452592;452593;452594;452595;452596;452597;452598;452599;452600;452601;452602;452603	452579			26	
VLLHLEEK	1	Unmodified	979.57023	0.57023162	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	34.398	33.769	3	0.0039067	28756	160511_QHF_FH_JSI11i_2	45.161	30.954			0.73424	0.71909	31.949	4	2	Median	0.83307	0.72793	NaN	1	1	Median	0.57876	0.71036	NaN	1	1	Median	0.64713	0.64611	NaN	1	0	Median	1.2839	1.3037	NaN	1	0	Median	166260000	89481000	76784000	35906000	17970000	17936000	48857000	28620000	20237000	52624000	31792000	20832000	28877000	11099000	17778000	55327	5637	52119	335664;335665;335666;335667	452604;452605;452606	452605			3	
VLLHLLK	1	Unmodified	834.56911	0.5691094	3633	Q8NE01	CNNM3	Metal transporter CNNM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	49.581	48.73	3	0.018428	42464	160511_QHF_FH_JSI11i_3	41.502	9.0317			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113820000	0	113820000	38054000	0	38054000	25251000	0	25251000	15502000	0	15502000	35013000	0	35013000	55328	3633	52120	335668;335669;335670;335671	452607;452608;452609;452610;452611;452612	452607			6	
VLLHVLFEHAVGYALLALK	1	Unmodified	2105.2401	0.2401177	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	97.502	89.223	3;4	5.0763E-71	53096	160513_QHF_FH_JSI10Kac_6	204.72	191.1			0.66514	0.71875	32.184	7	0	Median	0.87554	0.73876	3.8835	2	0	Median	0.58571	0.68928	14.704	2	0	Median	1.4172	1.3313	NaN	1	0	Median	0.49862	0.52529	13.044	2	0	Median	1100500000	596190000	504350000	397800000	208250000	189540000	455480000	284790000	170690000	142460000	38120000	104340000	104810000	65023000	39783000	55329	153	52121	335672;335673;335674;335675;335676;335677;335678	452613;452614;452615;452616;452617;452618;452619;452620;452621;452622	452619			10	
VLLIESLATMEPDSRPELQEK	1	Unmodified	2397.2461	0.24612687	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	90.875	90.425	3	1.5905E-28	80647	160511_QHF_FH_JSI11i_3	174.74	166.56			1.1692	1.1678	24.062	7	2	Median	1.1362	0.97738	NaN	1	0	Median	0.96217	1.1931	NaN	1	0	Median	1.1797	1.1573	1.2762	2	1	Median	1.4125	1.5194	36.157	3	1	Median	671640000	334980000	336660000	59239000	29956000	29283000	80391000	32760000	47631000	291840000	144510000	147320000	240170000	127750000	112420000	55330	2997	52122	335679;335680;335681;335682;335683;335684;335685	452623;452624;452625;452626;452627;452628;452629;452630	452623			8	
VLLIESLATMEPDSRPELQEK	1	Oxidation (M)	2413.241	0.24104149	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			3									2	1	78.613	78.358	3	1.8027E-05	68024	160511_QHF_FH_JSI12i_3	68.567	35.259			1.1243	1.1608	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1243	1.1608	NaN	1	0	Median	23982000	14244000	9737800	0	0	0	0	0	0	0	0	0	23982000	14244000	9737800	55331	2997	52122	335686;335687;335688	452631;452632;452633;452634;452635	452633		2179	5	
VLLISDPTTDK	1	Unmodified	1200.6602	0.66016884	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.02	3					3	2			1	3	3	1	59.287	52.749	2	2.6791E-07	47683	160511_QHF_FH_JSI11i_1	138.66	94.851			1.1392	1.14	31.628	8	3	Median	1.1578	0.95025	NaN	1	0	Median	1.0431	1.2524	30.553	3	2	Median	1.1208	1.0916	27.609	3	1	Plateau	0.67126	0.72073	NaN	1	0	Median	854260000	423910000	430350000	314190000	139220000	174980000	270760000	147870000	122880000	266640000	135390000	131250000	2667100	1429400	1237700	55332	1060	52123	335689;335690;335691;335692;335693;335694;335695;335696	452636;452637;452638;452639;452640;452641;452642;452643;452644	452637			8	
VLLLIDDEYK	1	Unmodified	1219.67	0.67000524	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	74.949	74.003	2	0.00094437	63948	160511_QHF_FH_JSI12i_2	73.985	50.556			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55333	3562	52124	335697;335698	452645;452646	452645			2	
VLLLLLLQPPPAK	1	Unmodified	1413.9323	0.93230836	1238	P23610	F8A1	Factor VIII intron 22 protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS		11.7	6.13			1						2		1	2		98.601	92.28	3	0.0011101	49680	160513_QHF_FH_JSI11Kac_6	69.672	64.012			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55334	1238	52125	335699;335700;335701	452647;452648;452649	452648			3	
VLLLLWK	1	Unmodified	883.58951	0.5895105	2980;5407	Q5VSL9;Q9ULQ0	STRIP1;STRIP2	Striatin-interacting protein 1;Striatin-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	88.82	83.119	2	0.0043966	43582	160513_QHF_FH_JSI11Kac_6	97.64	85.735			1.1296	1.2006	49.487	6	2	Median	1.2386	1.0421	69.888	2	1	Median	1.071	1.2318	NaN	1	0	Median	1.2403	1.1701	NaN	1	0	Median	0.71345	0.7647	72.24	2	1	Median	647720000	305200000	342520000	146290000	69847000	76445000	185510000	88043000	97470000	218240000	97645000	120600000	97674000	49664000	48010000	55335	2980;5407	52126	335702;335703;335704;335705;335706;335707;335708	452650;452651;452652;452653;452654;452655;452656;452657;452658;452659;452660	452651			11	
VLLLPLER	0	Unmodified	951.6117	0.6117025	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	74.66	74.04	2	0.0043669	65914	160511_QHF_FH_JSI11i_3	68.915	8.127			0.8865	0.88311	25.074	6	0	Median	0.98409	0.84735	NaN	1	0	Median	0.74102	0.92037	NaN	1	0	Median	0.98993	0.97968	23.926	2	0	Median	1.0179	1.084	46.007	2	0	Median	152140000	77281000	74861000	19888000	9357900	10530000	29745000	16220000	13525000	63570000	31193000	32377000	38938000	20509000	18430000	55336	641	52127	335709;335710;335711;335712;335713;335714	452661;452662;452663;452664;452665;452666;452667	452661			7	
VLLLSHLAR	0	Unmodified	1020.6444	0.64439961	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	56.776	49.012	2;3	1.4461E-05	26028	160513_QHF_FH_JSI9Kac_6	115.7	63.844			1.0837	1.103	20.455	10	0	Median	1.7641	1.5205	40.112	3	0	Median	0.88643	1.0145	4.2252	3	0	Median	1.1431	1.1	2.6303	2	0	Median	1.0936	1.1889	4.2499	2	0	Median	599880000	300280000	299600000	159920000	65625000	94296000	265090000	158990000	106100000	138810000	61610000	77199000	36058000	14054000	22004000	55337	5285	52128	335715;335716;335717;335718;335719;335720;335721;335722;335723;335724	452668;452669;452670;452671;452672;452673;452674;452675;452676;452677;452678;452679	452675			12	
VLLLSSPGLEELYR	0	Unmodified	1587.8872	0.88720866	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	2	1	1	93.902	93.724	2	3.4375E-06	83118	160511_QHF_FH_JSI10i_2	132.25	116.62			1.0569	0.88385	13.049	6	4	Linear	1.1094	0.94774	9.7485	2	2	Median	0.73826	0.92081	9.5829	2	2	Median	1.2061	1.1502	NaN	1	0	Median	1.0859	1.181	NaN	1	0	Median	329280000	170410000	158870000	108050000	56805000	51249000	196280000	101550000	94727000	18072000	8608700	9463300	6875800	3445000	3430800	55338	3499	52129	335725;335726;335727;335728;335729;335730	452680;452681;452682;452683;452684;452685	452684			6	
VLLLTGKPK	2	Unmodified	967.643	0.64300263	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			34.939	33.496	2	0.01057	27270	160511_QHF_FH_JSI9i_3	73.248	56.472			1.0309	0.83403	NaN	1	1	Median	1.0309	0.83403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85731000	37021000	48710000	85731000	37021000	48710000	0	0	0	0	0	0	0	0	0	55339	2789	52130	335731;335732;335733	452686;452687;452688	452688			3	
VLLLTGKPK	2	Acetyl (K)	1009.6536	0.65356732	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14.7	0.471							1	2			1		2	66.151	55.444	2	0.013926	27975	160513_QHF_FH_JSI12Kac_5	58.981	39.194			0.80657	0.85215	7.9517	3	0	Median	NaN	NaN	NaN	0	0	Median	0.81657	0.96458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76975	0.84184	1.7213	2	0	Median	12380000	6539300	5840900	0	0	0	3570000	1891800	1678200	0	0	0	8810100	4647500	4162700	55340	2789	52130	335734;335735;335736	452689	452689	2689		1	
VLLMELEEAR	0	Unmodified	1201.6377	0.63765925	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	69.699	68.805	2	0.0013132	59059	160511_QHF_FH_JSI12i_2	66.621	58.976			1.28	1.3121	10.336	4	0	Median	1.5828	1.3219	NaN	1	0	Median	0.88688	1.1	NaN	1	0	Median	1.3924	1.3981	NaN	1	0	Median	1.1768	1.3024	NaN	1	0	Median	391150000	188950000	202200000	68030000	24374000	43655000	88758000	50407000	38351000	131840000	67755000	64084000	102520000	46414000	56110000	55341	1016	52131	335737;335738;335739;335740	452690;452691;452692;452693;452694;452695;452696;452697;452698	452690			9	
VLLNIGQQMLR	0	Unmodified	1283.7384	0.73837635	1364	P30825	SLC7A1	High affinity cationic amino acid transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.75	0.433		1	3							2	1		1	75.217	74.225	2	9.7549E-05	62253	160511_QHF_FH_JSI10i_3	87.616	66.715			1.0313	1.0513	25.877	4	0	Median	1.3055	1.1039	2.7984	2	0	Median	0.86824	1.0213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64715	0.64509	NaN	1	0	Median	172590000	96198000	76397000	67167000	31113000	36054000	44085000	24974000	19111000	0	0	0	61343000	40111000	21232000	55342	1364	52132	335741;335742;335743;335744	452699;452700;452701;452702	452699			4	
VLLNIGQQMLR	0	Oxidation (M)	1299.7333	0.73329097	1364	P30825	SLC7A1	High affinity cationic amino acid transporter 1	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				60.388	58.864	2	0.020402	48329	160511_QHF_FH_JSI9i_3	50.607	13.913			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55343	1364	52132	335745	452703	452703		995	1	
VLLPEYGGTK	1	Unmodified	1075.5914	0.59136099	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	5	6	6	6	51.304	45.987	2	1.1434E-09	39528	160511_QHF_FH_JSI12i_2	135.79	98.77			1.011	1.015	9.3035	23	0	Median	1.0454	0.84182	10.366	5	0	Median	0.86601	0.95766	3.9587	6	0	Linear	1.0241	1.0276	2.6124	6	0	Median	1.0045	1.0713	6.372	6	0	Median	31503000000	15253000000	16250000000	5888300000	2816800000	3071500000	8491500000	4644300000	3847300000	9399000000	4173400000	5225600000	7724500000	3618800000	4105600000	55344	1959	52133	335746;335747;335748;335749;335750;335751;335752;335753;335754;335755;335756;335757;335758;335759;335760;335761;335762;335763;335764;335765;335766;335767;335768	452704;452705;452706;452707;452708;452709;452710;452711;452712;452713;452714;452715;452716;452717;452718;452719;452720;452721;452722;452723;452724;452725;452726;452727;452728;452729;452730;452731;452732;452733;452734;452735;452736;452737;452738;452739;452740;452741;452742;452743;452744;452745;452746;452747;452748;452749;452750;452751;452752;452753;452754;452755;452756;452757;452758	452712			55	
VLLPFIAYYMITGPWR	0	Unmodified	1939.043	0.042997794	5674	Q9Y5Q8	GTF3C5	General transcription factor 3C polypeptide 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	100.96	92.658	2;3	6.7829E-63	56013	160513_QHF_FH_JSI10Kac_6	208.42	158.14			0.98223	1.0762	32.72	7	0	Median	0.94595	0.82201	6.2776	2	0	Median	0.92378	1.0959	2.5667	2	0	Median	1.0306	0.97091	NaN	1	0	Median	1.6626	1.7732	6.8728	2	0	Median	2209600000	1177500000	1032100000	561770000	293330000	268440000	1067300000	620540000	446750000	338750000	167120000	171630000	241780000	96466000	145320000	55345	5674	52134	335769;335770;335771;335772;335773;335774;335775	452759;452760;452761;452762;452763;452764;452765;452766;452767;452768	452766			10	
VLLPFTR	0	Unmodified	844.51707	0.51707383	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	62.852	62.027	2	0.019993	53556	160511_QHF_FH_JSI12i_3	57.463	47.714			0.8652	0.90712	13.785	4	0	Median	1.3045	1.0458	NaN	1	0	Median	0.83015	0.96337	NaN	1	0	Median	0.90172	0.85415	NaN	1	0	Median	0.74818	0.76341	NaN	1	0	Median	900750000	475790000	424970000	217420000	100080000	117340000	182360000	110960000	71400000	253740000	130100000	123640000	247230000	134650000	112580000	55346	3734	52135	335776;335777;335778;335779	452769;452770;452771;452772;452773;452774;452775;452776	452776			8	
VLLPLHK	1	Unmodified	818.53781	0.53780928	2570;2394	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.428	37.642	2	0.0091535	31516	160511_QHF_FH_JSI10i_3	80.377	23.867			0.55714	0.60924	61.388	4	2	Median	1.3607	1.0854	NaN	1	0	Median	0.8082	0.93654	NaN	1	0	Median	0.33004	0.31653	NaN	1	1	Median	0.38406	0.39632	NaN	1	1	Median	1079500000	717400000	362090000	171320000	80307000	91018000	117660000	58481000	59175000	310280000	222800000	87477000	480230000	355800000	124420000	55347	2570;2394	52136	335780;335781;335782;335783	452777;452778;452779;452780;452781;452782	452778			6	
VLLPLHKVK	2	Acetyl (K)	1087.7118	0.7117509	2570;2394	Q14738;Q13362	PPP2R5D;PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	no	no	1	0	0	1			By MS/MS		16	0									1			1		61.09	51.376	3	0.010548	27805	160513_QHF_FH_JSI11Kac_6	51.949	37.275			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6931200	6931200	0	0	0	0	0	0	0	6931200	6931200	0	0	0	0	55348	2570;2394	52137	335784	452783	452783	2470		1	
VLLPVLLNK	1	Unmodified	1007.6743	0.67430276	104	O00186	STXBP3	Syntaxin-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	82.61	81.926	2	1.0895E-05	71037	160511_QHF_FH_JSI12i_3	105.12	100.26			0.87005	0.8951	11.139	4	4	Median	1.0575	0.86945	NaN	1	1	Median	0.77158	0.92151	NaN	1	1	Median	0.98109	0.92372	NaN	1	1	Median	0.71348	0.72909	NaN	1	1	Median	607590000	296360000	311230000	118100000	43740000	74364000	92083000	47267000	44816000	143410000	69319000	74095000	253990000	136030000	117960000	55349	104	52138	335785;335786;335787;335788;335789	452784;452785;452786;452787;452788;452789	452789			6	
VLLQAFDVVER	0	Unmodified	1287.7187	0.71868677	2703	Q15750	TAB1	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			78.47	77.747	2	0.0061031	68519	160511_QHF_FH_JSI9i_2	52.579	43.716			0.62654	0.64959	5.4015	2	0	Median	0.76939	0.67488	NaN	1	0	Median	0.51021	0.62525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39310000	21099000	18211000	18017000	9321000	8695500	21294000	11778000	9515900	0	0	0	0	0	0	55350	2703	52139	335790;335791	452790;452791	452790			1	
VLLQEEGTR	0	Unmodified	1043.5611	0.56112349	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	24.094	23.303	2	0.00014391	19297	160511_QHF_FH_JSI11i_2	104.44	86.401			0.99303	1.0463	1.1886	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0137	1.0375	NaN	1	0	Median	0.9728	1.0551	NaN	1	1	Median	618810000	312360000	306450000	0	0	0	0	0	0	388800000	187420000	201380000	230010000	124940000	105070000	55351	1085	52140	335792;335793	452792;452793;452794	452793			3	
VLLQHVHEGYEK	1	Unmodified	1450.7569	0.75686319	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			8									3	5	23.188	23.177	2;3;4	4.2299E-05	19077	160511_QHF_FH_JSI12i_3	104.22	91.985			0.83963	0.77693	27.126	7	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86135	0.80285	4.9205	3	0	Plateau	0.6994	0.72288	38.127	4	3	Median	732620000	367000000	365620000	0	0	0	0	0	0	235740000	121690000	114050000	496880000	245310000	251570000	55352	5641	52141	335794;335795;335796;335797;335798;335799;335800;335801	452795;452796;452797;452798;452799;452800;452801;452802;452803;452804;452805;452806;452807	452803			13	
VLLQNTSFFSSLLNEMAHK	1	Unmodified	2178.1143	0.11432484	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.2	6.37			3						2	2	2	1		99.308	96.284	3	3.0512E-101	90888	160511_QHF_FH_JSI11i_3	267.39	244.51			0.87214	1.0263	22.63	5	2	Median	1.0811	0.89503	41.467	2	1	Median	0.86275	1.0224	0.53235	2	1	Median	1.1478	1.0978	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1042800000	505510000	537320000	219880000	107620000	112260000	392720000	207060000	185650000	430220000	190820000	239400000	0	0	0	55353	5323	52142	335802;335803;335804;335805;335806	452808;452809;452810;452811;452812;452813	452808			6	
VLLQSKDQITAGNAAR	1	Acetyl (K)	1725.9373	0.93734675	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		61.14	50.09	2	0.029594	28478	160513_QHF_FH_JSI11Kac_4	55.452	38.82			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1065300	1065300	0	0	0	0	0	0	0	1065300	1065300	0	0	0	0	55354	1206	52143	335807	452814	452814			1	
VLLSALER	0	Unmodified	899.54402	0.54401687	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	2	1	1	50.37	49.271	2	0.04312	41048	160511_QHF_FH_JSI10i_3	38.792	15.268			0.93819	1.0548	8.3863	5	0	Median	1.3016	1.068	NaN	1	0	Median	0.93013	1.0944	5.2184	2	0	Median	1.0243	1.0514	NaN	1	0	Median	0.80349	0.90484	NaN	1	0	Median	2140700000	1096900000	1043700000	406180000	196920000	209260000	978440000	509050000	469390000	489030000	254610000	234420000	267000000	136350000	130650000	55355	1004	52144	335808;335809;335810;335811;335812	452815;452816	452815			2	
VLLSDSNLHDA	0	Unmodified	1182.5881	0.58806652	3042	Q6FI81	CIAPIN1	Anamorsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	3	3	3	44.968	41.498	2	2.6226E-05	36983	160511_QHF_FH_JSI9i_1	99.815	84.153			0.93171	0.96313	11.181	11	3	Median	1.1651	0.96714	0.58776	2	0	Median	0.83343	0.98756	12.525	3	2	Median	0.92402	0.90387	6.0522	3	0	Plateau	0.87248	0.94438	20.344	3	1	Median	2637900000	1455800000	1182200000	548540000	268510000	280030000	714820000	408520000	306300000	749560000	408100000	341470000	625030000	370670000	254360000	55356	3042	52145	335813;335814;335815;335816;335817;335818;335819;335820;335821;335822;335823	452817;452818;452819;452820;452821;452822;452823;452824;452825;452826;452827;452828;452829;452830;452831	452825			15	
VLLSEFRPSGELFAIK	1	Unmodified	1805.0087	0.0087207779	2731	Q16512	PKN1	Serine/threonine-protein kinase N1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		91.825	91.119	3	0.0035526	74744	160511_QHF_FH_JSI9i_3	45.864	34.424			1.0355	0.96214	18.48	3	0	Plateau	0.91259	0.74248	NaN	1	0	Median	0.95789	1.0619	NaN	1	0	Median	1.0355	0.96214	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	101140000	52223000	48915000	27025000	15118000	11907000	30441000	15776000	14666000	43671000	21329000	22343000	0	0	0	55357	2731	52146	335824;335825;335826	452832;452833;452834;452835	452835			4	
VLLSLEHGLWAPNLHFHSPNPEIPALLDGR	0	Unmodified	3341.7673	0.7673153	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			14						7	2	9	8	2	102.09	99.508	3;4;5	8.8133E-165	47546	160513_QHF_FH_JSI10Kac_6	273.41	244.45			0.98717	1.009	32.815	20	5	Median	1.6545	1.4171	15.373	2	0	Median	1.0466	1.2694	37.59	9	3	Median	0.91991	0.89959	14.081	7	1	Median	0.80933	0.85146	3.6263	2	1	Median	5450300000	2724600000	2725700000	1302500000	493060000	809410000	3499400000	1931300000	1568100000	601070000	273740000	327330000	47413000	26535000	20878000	55358	1650	52147	335827;335828;335829;335830;335831;335832;335833;335834;335835;335836;335837;335838;335839;335840;335841;335842;335843;335844;335845;335846;335847	452836;452837;452838;452839;452840;452841;452842;452843;452844;452845;452846;452847;452848;452849;452850;452851;452852;452853;452854;452855;452856;452857	452856			21	
VLLSLLSIK	1	Unmodified	984.65832	0.65831834	5620	Q9Y4B6	VPRBP	Protein VPRBP	yes	yes	0	0	0	0	By MS/MS			By MS/MS	11.7	6.13			1						2	2			1	86.399	82.038	2	0.0049758	41885	160513_QHF_FH_JSI9Kac_6	62.582	32.775			0.62739	0.59341	14.059	2	2	Median	0.61677	0.53726	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63819	0.65544	NaN	1	1	Median	105830000	62552000	43282000	64603000	39646000	24958000	0	0	0	0	0	0	41230000	22906000	18324000	55359	5620	52148	335848;335849;335850	452858;452859;452860	452859			3	
VLLSPDYLPAMR	0	Unmodified	1373.7377	0.73770765	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	3	1	81.497	80.981	2	2.4961E-07	71550	160511_QHF_FH_JSI9i_2	130.66	65.309			0.8957	0.99678	26.911	7	3	Median	1.2927	1.1115	NaN	1	0	Median	0.73567	0.8595	33.892	2	1	Median	1.0171	1.0253	33.039	3	2	Plateau	0.89304	0.99678	NaN	1	0	Median	747800000	389180000	358620000	121490000	59431000	62055000	194090000	104440000	89647000	286510000	133150000	153360000	145710000	92154000	53558000	55360	3290	52149	335851;335852;335853;335854;335855;335856;335857	452861;452862;452863;452864;452865;452866;452867;452868;452869;452870	452866			10	
VLLSYHGWMFTEHGK	1	Unmodified	1803.8767	0.87666075	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	73.938	65.226	4	0.00013763	35825	160513_QHF_FH_JSI10Kac_6	76.548	66.209			0.86981	0.94496	36.123	4	2	Linear	1.4492	1.2391	NaN	1	0	Median	0.79135	0.9443	NaN	1	0	Median	1.8929	1.8606	NaN	1	1	Median	1.9028	2.0523	NaN	1	1	Median	251070000	140980000	110090000	50591000	24811000	25780000	138790000	93733000	45057000	44133000	15158000	28974000	17554000	7274100	10280000	55361	1704	52150	335858;335859;335860;335861	452871;452872;452873;452874	452874			4	
VLLTMIAR	0	Unmodified	915.55756	0.55755844	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.54	6.62		4	3					2	4	4	4	3	2	64.608	59.7	2	5.1065E-16	32807	160513_QHF_FH_JSI10Kac_6	162.51	67.845			0.85052	0.90127	10.222	13	1	Median	1.1894	0.98399	6.9859	4	0	Median	0.80403	0.94504	8.2824	4	0	Median	0.90144	0.85227	7.8556	3	1	Median	0.73798	0.80641	11.131	2	0	Median	5564100000	2720800000	2843300000	1271600000	537770000	733800000	1979300000	1073300000	905980000	1908200000	872820000	1035400000	405000000	236880000	168130000	55362	520	52151	335862;335863;335864;335865;335866;335867;335868;335869;335870;335871;335872;335873;335874	452875;452876;452877;452878;452879;452880;452881;452882;452883;452884;452885;452886;452887;452888;452889;452890;452891	452891			17	
VLLTMIAR	0	Oxidation (M)	931.55247	0.55247306	520	O75396	SEC22B	Vesicle-trafficking protein SEC22b	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.687							2	6	4	2	5	2	3	56.187	46.049	2	0.0051081	24648	160513_QHF_FH_JSI9Kac_6	75.189	27.446			0.97056	1.0399	9.4592	12	0	Median	1.1734	0.9966	20.346	2	0	Median	0.82797	0.99124	8.0327	5	0	Median	1.1035	1.0713	7.7086	2	0	Median	0.98261	1.0341	6.4443	3	0	Plateau	471370000	233990000	237370000	137250000	57853000	79394000	226830000	121150000	105680000	15972000	8762800	7208900	91318000	46226000	45092000	55363	520	52151	335875;335876;335877;335878;335879;335880;335881;335882;335883;335884;335885;335886	452892;452893;452894;452895;452896;452897	452893		195	6	
VLLTTQGVDMISK	1	Unmodified	1403.7694	0.76940171	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.93	8	4	1				3			4	4	4	4	70.033	67.33	2	3.5634E-07	59678	160511_QHF_FH_JSI9i_2	136.48	128.26			0.98292	0.99896	25.512	15	7	Median	1.28	1.1023	17.889	3	1	Median	0.81557	0.96075	27.249	4	2	Median	0.89775	0.90374	34.896	4	2	Median	0.89863	0.98794	22.527	4	2	Median	1674600000	851450000	823180000	229630000	115960000	113670000	520050000	267020000	253030000	546590000	265720000	280870000	378370000	202760000	175610000	55364	2517	52152	335887;335888;335889;335890;335891;335892;335893;335894;335895;335896;335897;335898;335899;335900;335901;335902	452898;452899;452900;452901;452902;452903;452904;452905;452906;452907;452908;452909;452910;452911;452912;452913;452914;452915;452916;452917	452911			20	
VLLTTQGVDMISK	1	Oxidation (M)	1419.7643	0.76431633	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0		By MS/MS			14	0							2				2			65.361	54.663	2	0.0074435	29701	160513_QHF_FH_JSI10Kac_4	52.79	24.063			1.1395	1.3469	71.317	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1395	1.3469	71.317	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6473000	3185600	3287300	0	0	0	6473000	3185600	3287300	0	0	0	0	0	0	55365	2517	52152	335903;335904	452918;452919	452918		1993	2	
VLLVGADNFTLLGK	1	Unmodified	1458.8446	0.84461556	3251	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	96.547	96.3	2	6.6223E-10	84446	160511_QHF_FH_JSI11i_2	149.23	134.54			1.1454	1.0601	11.083	4	1	Linear	1.2982	1.1	NaN	1	0	Median	0.8418	1.0583	NaN	1	0	Median	1.0721	1.0545	NaN	1	0	Median	1.2237	1.332	NaN	1	1	Median	160670000	68824000	91841000	39464000	15505000	23960000	41249000	20962000	20287000	42180000	14860000	27321000	37772000	17498000	20274000	55366	3251	52153	335905;335906;335907;335908	452920;452921;452922;452923;452924;452925;452926	452924			7	
VLLVGLK	1	Unmodified	740.51601	0.5160112	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.72		4	2					1	4	3	3	2	3	60.037	55.211	2	0.024744	30090	160513_QHF_FH_JSI11Kac_6	65.897	48.971			0.97223	0.94948	22.8	11	0	Median	1.0863	0.92499	25.625	3	0	Median	1.0447	1.2052	10.735	3	0	Median	0.86324	0.84924	11.365	2	0	Median	0.84715	0.94948	22.567	3	0	Median	1697800000	826130000	871720000	265920000	120900000	145030000	463670000	237490000	226190000	419250000	196320000	222930000	549000000	271420000	277580000	55367	5233	52154	335909;335910;335911;335912;335913;335914;335915;335916;335917;335918;335919	452927;452928;452929;452930;452931;452932;452933;452934;452935;452936;452937;452938;452939;452940	452930			14	
VLLVLELQGLQK	1	Unmodified	1351.8439	0.84388728	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.52	5.9		15	4						6	8	7	5	5	96.771	95.707	2;3	2.2262E-26	44657	160513_QHF_FH_JSI11Kac_6	160.75	127.01			0.65236	0.62808	17.71	10	10	Median	0.69323	0.60505	17.331	4	4	Median	0.61442	0.75273	24.07	2	2	Median	0.65236	0.65618	3.5951	2	2	Median	0.55354	0.60371	9.2339	2	2	Median	716110000	364210000	351900000	489330000	241850000	247490000	59665000	35111000	24554000	97938000	49870000	48068000	69176000	37382000	31794000	55368	2569	52155	335920;335921;335922;335923;335924;335925;335926;335927;335928;335929;335930;335931;335932;335933;335934;335935;335936;335937;335938;335939;335940;335941;335942;335943;335944	452941;452942;452943;452944;452945;452946;452947;452948;452949;452950;452951;452952;452953;452954;452955;452956;452957;452958;452959;452960;452961;452962;452963;452964;452965;452966;452967;452968;452969;452970;452971	452946			31	
VLLVLPK	1	Unmodified	780.54731	0.54731133	467	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	62.814	61.89	2	0.038396	53649	160511_QHF_FH_JSI11i_2	48.174	25.551			0.90252	0.95961	6.7786	3	0	Median	1.1468	1.0174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90252	0.95961	NaN	1	0	Median	0.83672	0.88876	NaN	1	0	Median	80391000	43770000	36621000	15678000	8544900	7132900	0	0	0	38321000	20862000	17460000	26392000	14364000	12028000	55369	467	52156	335945;335946;335947	452972;452973	452972			2	
VLLVPGPEK	1	Unmodified	950.58007	0.58006802	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.65	3	6	4				2	3		4	4	5	5	51.232	47.636	2	0.00010418	42888	160511_QHF_FH_JSI10i_1	93.374	83.387			0.99795	1.0572	10.25	18	4	Median	1.2985	1.0705	13.471	4	2	Median	0.85381	1.0406	14.401	4	2	Median	1.0299	0.99974	10.012	5	0	Median	1.0074	1.0466	6.4193	5	0	Median	2267900000	1178000000	1090000000	555800000	275150000	280650000	663440000	374700000	288750000	616150000	332130000	284020000	432550000	195990000	236560000	55370	4279	52157	335948;335949;335950;335951;335952;335953;335954;335955;335956;335957;335958;335959;335960;335961;335962;335963;335964;335965	452974;452975;452976;452977;452978;452979;452980;452981;452982;452983;452984;452985;452986;452987;452988;452989;452990;452991;452992	452983			18	
VLLVSPELQAAVEEILPSLK	1	Unmodified	2147.2453	0.24532223	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							1	3	3	3	103.25	103.18	2;3	2.0586E-54	89061	160511_QHF_FH_JSI12i_2	219.29	208.03			0.98934	1.1125	23.655	10	3	Median	1.0237	0.86621	NaN	1	0	Median	0.73434	0.90315	14.632	3	2	Plateau	1.166	1.187	33.978	3	1	Median	0.97012	1.1264	6.3372	3	0	Plateau	677930000	335960000	341970000	90977000	46146000	44831000	175710000	93439000	82266000	183500000	86678000	96827000	227740000	109700000	118040000	55371	228	52158	335966;335967;335968;335969;335970;335971;335972;335973;335974;335975	452993;452994;452995;452996;452997;452998;452999;453000;453001;453002;453003;453004;453005;453006;453007;453008;453009;453010	452997			18	
VLLVSPELQAAVEEILPSLKK	2	Unmodified	2275.3403	0.34028525	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	102.54	102.5	3	1.3614E-36	89260	160511_QHF_FH_JSI12i_3	186.9	179.18			1.243	1.2731	16.303	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81127	0.93313	NaN	1	0	Median	1.2635	1.1875	NaN	1	0	Median	1.243	1.2731	NaN	1	0	Median	469010000	211680000	257330000	0	0	0	46173000	25226000	20947000	121220000	55962000	65260000	301620000	130490000	171120000	55372	228	52159	335976;335977;335978	453011;453012;453013;453014;453015;453016;453017	453017			7	
VLLWLVGLQNVFSHQLPR	0	Unmodified	2118.2102	0.21021455	3892	Q92830	KAT2A	Histone acetyltransferase KAT2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.553	90.14	3	1.1489E-97	53390	160513_QHF_FH_JSI10Kac_6	238.32	217.09			0.8513	0.8702	8.3252	2	0	Median	0.93777	0.82045	NaN	1	0	Median	0.7728	0.92296	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1027100000	536450000	490640000	325190000	154070000	171120000	701900000	382390000	319520000	0	0	0	0	0	0	55373	3892	52160	335979;335980	453018;453019	453019			2	
VLLYLLSPR	0	Unmodified	1072.6645	0.66446635	2666	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	12.1	5.79			2					1	4	3	1	1	2	82.796	76.379	2	0.00019489	40215	160513_QHF_FH_JSI9Kac_6	103.74	85.703			0.83062	0.72953	20.29	7	0	Median	0.86932	0.72953	3.469	3	0	Median	0.59353	0.70152	NaN	1	0	Median	1.0186	0.96436	NaN	1	0	Median	0.61459	0.64667	36.862	2	0	Median	844230000	465420000	378810000	164070000	81555000	82517000	345310000	226230000	119080000	226730000	92912000	133810000	108110000	64718000	43394000	55374	2666	52161	335981;335982;335983;335984;335985;335986;335987	453020;453021;453022;453023	453021			4	
VLMAFYQLEILAEETILSWFSQR	0	Unmodified	2786.4353	0.43532462	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0		By MS/MS			13.5	2.5				1					1		2			106.13	98.712	3	1.233E-48	59507	160513_QHF_FH_JSI10Kac_6	184.62	169.67			0.68147	0.8011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68147	0.8011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104530000	60426000	44103000	0	0	0	104530000	60426000	44103000	0	0	0	0	0	0	55375	2358	52162	335988;335989	453024;453025;453026	453025			3	
VLMAQHFDEVWNSEACNK	1	Unmodified	2176.967	0.96700867	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							2	1	1	1	66.348	65.84	3	6.7133E-17	58567	160511_QHF_FH_JSI11i_3	161.91	148.32			0.90793	0.987	22.253	4	1	Median	1.5507	1.3257	NaN	1	1	Median	0.78351	0.9451	NaN	1	0	Median	0.81751	0.77503	NaN	1	0	Median	1.0083	1.0308	NaN	1	0	Median	696360000	368430000	327930000	41194000	22186000	19008000	73682000	44017000	29665000	286720000	151270000	135450000	294770000	150960000	143810000	55376	1579	52163	335990;335991;335992;335993;335994	453027;453028;453029;453030;453031;453032;453033	453027			7	
VLMATNR	0	Unmodified	803.43236	0.43235793	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.55	6.64		3	3					1	4	3	2	3	3	15.349	11.496	2	0.0016721	9850	160511_QHF_FH_JSI12i_3	118.01	0			1.0382	0.9432	12.958	11	0	Median	0.97481	0.82321	12.718	3	0	Plateau	0.89296	1.0142	21.529	2	0	Median	1.0382	0.9832	7.0426	3	0	Median	0.80506	0.87331	18.232	3	0	Median	5026600000	2572400000	2454200000	766920000	364510000	402400000	463440000	206320000	257120000	1740300000	860710000	879550000	2056000000	1140800000	915160000	55377	1449	52164	335995;335996;335997;335998;335999;336000;336001;336002;336003;336004;336005	453034;453035;453036;453037;453038;453039;453040;453041;453042	453041			9	
VLMEKEFPGFLENQK	2	Acetyl (K);Oxidation (M)	1865.9233	0.92333617	1923	P60903	S100A10	Protein S100-A10	yes	yes	1	0	1	1		By matching	By MS/MS		15	0								2			1	1		81.527	71.056	3	0.0011425	37668	160513_QHF_FH_JSI11Kac_5	61.641	53.86			0.67954	0.72202	66.824	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0037	1.1581	NaN	1	0	Median	0.46005	0.45013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	15008000	9483400	5525100	0	0	0	1498300	798340	699950	13510000	8685100	4825100	0	0	0	55378	1923	52165	336006;336007	453043;453044;453045	453045	1932	1595	3	
VLMEKEFPGFLENQK	2	Acetyl (K)	1849.9284	0.92842155	1923	P60903	S100A10	Protein S100-A10	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15.5	0.5								1	1			1	1	86.109	76.134	3	0.0021565	39987	160513_QHF_FH_JSI11Kac_5	53.981	44.323			0.5379	0.53683	32.685	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43454	0.42605	NaN	1	0	Median	0.66583	0.67641	NaN	1	0	Median	30131000	21652000	8479100	0	0	0	0	0	0	10386000	7041000	3345000	19745000	14611000	5134100	55379	1923	52165	336008;336009	453046;453047;453048;453049	453048	1932		3	
VLMEKELPGFLQSGK	2	Acetyl (K)	1716.912	0.9120432	1268	P25815	S100P	Protein S100-P	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		85.832	75.919	2	0.00044916	42100	160513_QHF_FH_JSI11Kac_6	136.24	102.83			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13952000	13952000	0	0	0	0	0	0	0	13952000	13952000	0	0	0	0	55380	1268	52166	336010;336011	453050;453051	453050	1170		2	
VLMEKELPGFLQSGK	2	Acetyl (K);Oxidation (M)	1732.907	0.90695782	1268	P25815	S100P	Protein S100-P	yes	yes	1	0	1	1			By MS/MS		15	0								2				2		81.039	70.472	2;3	0.0014461	37364	160513_QHF_FH_JSI11Kac_5	88.441	54.555			0.28725	0.27418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28725	0.27418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8091900	6556900	1535000	0	0	0	0	0	0	8091900	6556900	1535000	0	0	0	55381	1268	52166	336012;336013	453052;453053	453053	1170	896	2	
VLMKFMEMLSK	2	Acetyl (K)	1397.7121	0.71208653	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.828	83.456	2	0.001331	46933	160513_QHF_FH_JSI11Kac_6	84.198	62.112			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10175000	10175000	0	0	0	0	0	0	0	10175000	10175000	0	0	0	0	55382	2296	52167	336014	453054	453054	2409		1	
VLMLLYSSK	1	Oxidation (M)	1068.5889	0.58891815	3207;3385	Q86YD1;Q71SY5	PTOV1;MED25	Prostate tumor-overexpressed gene 1 protein;Mediator of RNA polymerase II transcription subunit 25	no	no	0	0	1	0	By matching		By MS/MS	By MS/MS	15.7	0.471								1	2	1		1	1	65.41	55.242	2	0.0078027	28747	160513_QHF_FH_JSI12Kac_6	66.692	37.543			1.624	1.4754	59.402	2	0	Median	2.6735	2.2455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9865	0.96935	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25310000	12455000	12855000	5132000	1799600	3332400	0	0	0	20178000	10655000	9522500	0	0	0	55383	3385;3207	52168	336015;336016;336017	453055;453056	453056		2214	2	
VLMLLYSSK	1	Unmodified	1052.594	0.59400353	3207;3385	Q86YD1;Q71SY5	PTOV1;MED25	Prostate tumor-overexpressed gene 1 protein;Mediator of RNA polymerase II transcription subunit 25	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	16	0									4	1	1	1	1	74.594	65.91	2	0.0037877	36342	160513_QHF_FH_JSI10Kac_6	72.23	59.403			0.90383	0.93702	13.228	4	0	Median	0.90842	0.78166	NaN	1	0	Median	0.88454	1.0153	NaN	1	0	Median	0.89926	0.86482	NaN	1	0	Median	0.97894	1.0287	NaN	1	0	Median	370510000	204200000	166310000	86738000	41919000	44819000	111160000	69555000	41606000	120890000	63938000	56956000	51719000	28788000	22931000	55384	3385;3207	52168	336018;336019;336020;336021	453057;453058	453058			2	
VLMLTLQNDPPSLETGVQDK	1	Unmodified	2197.13	0.13003448	721	O95747	OXSR1	Serine/threonine-protein kinase OSR1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.099	85.606	3	0.056745	77940	160511_QHF_FH_JSI12i_1	20.077	12.884			0.95629	0.96792	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95629	0.96792	NaN	1	1	Median	9410100	4395100	5015000	0	0	0	0	0	0	0	0	0	9410100	4395100	5015000	55385	721	52169	336022	453059	453059			1	
VLNALKPEK	2	Unmodified	1010.6124	0.61243078	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	3	1	20.849	20.438	2;3	0.00057217	16569	160511_QHF_FH_JSI12i_3	61.65	29.807			0.6325	0.62918	46.058	6	3	Median	0.87518	0.71952	NaN	1	0	Median	0.74182	0.84327	NaN	1	0	Median	0.5106	0.47132	69.398	3	3	Median	0.5393	0.55018	NaN	1	0	Median	993610000	579140000	414470000	119740000	64277000	55462000	166270000	96273000	69994000	461110000	254340000	206760000	246500000	164240000	82255000	55386	3141	52170	336023;336024;336025;336026;336027;336028;336029	453060;453061;453062;453063;453064;453065;453066;453067	453067			8	
VLNEAVGALMYHTITLTR	0	Unmodified	2001.0717	0.07173174	2395	Q13363	CTBP1	C-terminal-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	92.809	92.798	3	1.7566E-05	80439	160511_QHF_FH_JSI12i_3	79.568	70.153			0.80833	0.7845	10.726	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77859	0.7272	NaN	1	0	Median	0.83921	0.84632	NaN	1	0	Median	105730000	55741000	49993000	0	0	0	0	0	0	50661000	28254000	22408000	55072000	27487000	27586000	55387	2395	52171	336030;336031	453068;453069;453070;453071	453071			4	
VLNEAVGAMMYHTITLTR	0	Unmodified	2019.0282	0.028152366	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		1	4						2	2	3	1	1	85.578	83.112	3	5.9599E-12	74938	160511_QHF_FH_JSI12i_3	144.33	135.54			0.99825	0.99605	9.6089	7	3	Median	1.2008	1.0159	2.7888	2	1	Median	0.86838	1.0297	12.439	3	2	Plateau	1.045	0.98096	NaN	1	0	Median	0.99825	1.0176	NaN	1	0	Median	703390000	352920000	350480000	165860000	65296000	100560000	307660000	170540000	137120000	120460000	59388000	61071000	109420000	57690000	51726000	55388	1882	52172	336032;336033;336034;336035;336036;336037;336038	453072;453073;453074;453075;453076;453077;453078	453077			7	
VLNEAVGAMMYHTITLTR	0	Oxidation (M)	2035.0231	0.023066988	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				73.345	64.76	3	0.011484	34503	160513_QHF_FH_JSI9Kac_6	44.047	34.516			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55389	1882	52172	336039	453079	453079		1560	1	
VLNEAVGAMMYHTITLTREDLEK	1	Unmodified	2633.3193	0.31930859	1882	P56545	CTBP2	C-terminal-binding protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		99.298	99.298	4	3.2017E-09	88346	160511_QHF_FH_JSI11i_3	85.35	77.638			0.89773	0.83144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89773	0.83144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	89865000	50412000	39453000	0	0	0	0	0	0	89865000	50412000	39453000	0	0	0	55390	1882	52173	336040	453080	453080			1	
VLNGNQQVVDTSLK	1	Unmodified	1513.81	0.81002097	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.697	41.05	2	8.0103E-15	37372	160511_QHF_FH_JSI12i_1	162.68	123.66			1.1971	1.2718	37.612	4	1	Median	2.1753	1.8166	NaN	1	1	Median	0.89341	1.0306	NaN	1	0	Median	1.6039	1.5694	NaN	1	0	Median	0.7648	0.80293	NaN	1	0	Median	311570000	144140000	167430000	63454000	18982000	44472000	86007000	45611000	40395000	84154000	36838000	47316000	77952000	42705000	35247000	55391	3264	52174	336041;336042;336043;336044	453081;453082;453083;453084;453085	453083			5	
VLNGPEGDGVPEAVVTLNNQIK	1	Unmodified	2262.1856	0.18557552	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.024	80.554	3	6.5875E-07	71603	160511_QHF_FH_JSI9i_1	75.224	67.42			0.95122	0.93727	10.267	4	0	Median	1.221	1.0016	NaN	1	0	Median	0.71753	0.85006	NaN	1	0	Median	0.89655	0.87709	NaN	1	0	Median	1.0092	1.0521	NaN	1	0	Median	338180000	183200000	154970000	54565000	24639000	29926000	95156000	54100000	41056000	85014000	50401000	34613000	103440000	54062000	49380000	55392	2638;2895	52175	336045;336046;336047;336048	453086;453087;453088;453089	453089			4	
VLNGYSLQHK	1	Unmodified	1157.6193	0.61930707	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	23.712	23.064	2;3	5.1123E-20	18876	160511_QHF_FH_JSI12i_3	158.79	133.32			0.99069	0.9431	17.634	8	0	Median	0.92292	0.76548	18.162	2	0	Median	0.8149	0.95053	17.651	2	0	Median	1.0019	0.9431	3.3874	2	0	Median	1.108	1.1279	3.6913	2	0	Median	819420000	450230000	369190000	48681000	30691000	17990000	90367000	58022000	32345000	222530000	136860000	85670000	457840000	224660000	233180000	55393	2578	52176	336049;336050;336051;336052;336053;336054;336055;336056	453090;453091;453092;453093;453094;453095	453093			6	
VLNHFSIMQQR	0	Oxidation (M)	1387.7031	0.70305348	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				39.887	30.829	3	0.0091798	16604	160513_QHF_FH_JSI9Kac_6	43.544	29.191			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55394	1432	52177	336057	453096	453096		1088	1	
VLNHFSIMQQR	0	Unmodified	1371.7081	0.70813886	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	51.083	41.885	3	7.517E-05	23034	160513_QHF_FH_JSI10Kac_6	87.713	77.525			0.99191	1.1369	41.93	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2917	1.5293	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76171	0.84521	NaN	1	1	Median	44103000	23538000	20565000	0	0	0	34121000	19224000	14897000	0	0	0	9981900	4313900	5668000	55395	1432	52177	336058;336059	453097;453098	453098			2	
VLNLHLLNSGTK	1	Unmodified	1307.7561	0.75613491	3842	Q92545	TMEM131	Transmembrane protein 131	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			56.245	54.689	3	0.00065729	45732	160511_QHF_FH_JSI10i_3	68.034	60.664			0.27171	0.26534	0.09749	2	2	Median	0.3172	0.26516	NaN	1	1	Median	0.23275	0.26552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251780000	202830000	48946000	102250000	74272000	27977000	149530000	128560000	20968000	0	0	0	0	0	0	55396	3842	52178	336060;336061	453099;453100	453099			2	
VLNLIQSWADAFR	0	Unmodified	1531.8147	0.81471242	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		101.99	101.9	2	9.5381E-14	84485	160511_QHF_FH_JSI10i_3	129.89	98.467			0.80598	0.716	22.025	2	0	Median	1.0001	0.83666	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64953	0.61274	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	118490000	69123000	49363000	33668000	17501000	16167000	0	0	0	84817000	51622000	33196000	0	0	0	55397	448	52179	336062;336063;336064	453101;453102	453101			2	
VLNLPPNTIMEYK	1	Unmodified	1530.8116	0.81160087	431	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										1	3	76.838	75.757	2	0.00012851	66507	160511_QHF_FH_JSI11i_2	85.958	65.655			1.1419	1.189	19.073	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4588	1.5484	NaN	1	0	Median	1.1167	1.1552	11.742	3	2	Median	93137000	41117000	52021000	0	0	0	0	0	0	38224000	15269000	22955000	54913000	25848000	29065000	55398	431	52180	336065;336066;336067;336068	453103;453104;453105	453105			3	
VLNLWQK	1	Unmodified	899.52289	0.52288749	644;5459	O95104;Q9UPN6	SCAF4;SCAF8	Splicing factor, arginine/serine-rich 15;Protein SCAF8	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	52.034	51.955	2	0.014149	44517	160511_QHF_FH_JSI12i_3	67.741	37.296			1.6889	1.5593	78.014	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92089	0.84541	86.573	2	2	Median	1.887	1.9536	NaN	1	1	Median	299220000	142650000	156570000	0	0	0	0	0	0	185620000	99616000	86008000	113590000	43035000	70559000	55399	644;5459	52181	336069;336070;336071	453106;453107;453108	453108			3	
VLNMKPPEILSMIEEAAGTR	1	Unmodified	2198.1439	0.14391041	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		101.69	101.69	3	3.3226E-33	90754	160511_QHF_FH_JSI11i_3	149.73	135.42			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55400	679	52182	336072	453109	453109			1	
VLNMKPPEILSMIEEAAGTR	1	Oxidation (M)	2214.1388	0.13882503	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	1	1	By MS/MS				3	0			1							1				101	100.79	3	0.005441	81749	160511_QHF_FH_JSI9i_3	53.059	48.509			1.011	0.82426	NaN	1	0	Median	1.011	0.82426	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37922000	16370000	21552000	37922000	16370000	21552000	0	0	0	0	0	0	0	0	0	55401	679	52182	336073	453110	453110		239	0	
VLNNFISNQK	1	Unmodified	1175.6299	0.62987176	1576	P46013	MKI67	Antigen KI-67	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	38.906	38.238	2	0.00016412	33540	160511_QHF_FH_JSI11i_3	93.551	62.477			0.90851	0.95801	27.126	6	1	Median	0.88168	0.73866	NaN	1	0	Median	0.75697	0.90317	NaN	1	0	Median	1.2862	1.2637	36.171	2	1	Median	0.98411	1.0491	15.83	2	0	Median	576950000	268540000	308410000	73583000	32707000	40876000	50499000	22476000	28024000	213530000	100160000	113380000	239340000	113200000	126130000	55402	1576	52183	336074;336075;336076;336077;336078;336079	453111;453112;453113;453114;453115;453116	453111			6	
VLNNMEIGASLFDEEGAK	1	Oxidation (M)	1951.9197	0.91970735	866	P07205	PGK2	Phosphoglycerate kinase 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	81.78	81.165	2	0.0033117	73855	160511_QHF_FH_JSI11i_1	71.555	58.994			0.41693	0.40016	34.1	7	7	Median	0.70668	0.6066	24.006	2	2	Median	0.34287	0.41466	41.479	2	2	Median	0.41693	0.40016	NaN	1	1	Median	0.29649	0.31805	20.504	2	2	Median	743670000	576080000	167580000	117730000	76665000	41068000	319570000	259660000	59914000	108540000	81180000	27358000	197820000	158580000	39241000	55403	866	52184	336080;336081;336082;336083;336084;336085;336086	453117;453118;453119;453120;453121;453122;453123	453117		406	7	
VLNNMEIGTSLFDEEGAK	1	Unmodified	1965.9354	0.93535742	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.04	0.824	8	8	9							6	6	7	6	82.025	81.38	2;3	6.128E-138	70471	160511_QHF_FH_JSI12i_2	353.67	340.25			0.92107	0.93942	5.0038	24	0	Median	1.0998	0.90498	5.5322	6	0	Median	0.79121	0.94791	6.8237	6	0	Median	0.94362	0.94753	3.5339	6	0	Median	0.8963	0.96774	2.6344	6	0	Median	18948000000	9958600000	8989600000	3218500000	1338100000	1880500000	6332700000	3492600000	2840000000	4822800000	2579200000	2243600000	4574100000	2548600000	2025500000	55404	775	52185	336087;336088;336089;336090;336091;336092;336093;336094;336095;336096;336097;336098;336099;336100;336101;336102;336103;336104;336105;336106;336107;336108;336109;336110;336111	453124;453125;453126;453127;453128;453129;453130;453131;453132;453133;453134;453135;453136;453137;453138;453139;453140;453141;453142;453143;453144;453145;453146;453147;453148;453149;453150;453151;453152;453153;453154;453155;453156;453157;453158;453159;453160;453161;453162;453163;453164;453165;453166;453167;453168;453169;453170;453171;453172;453173;453174;453175;453176;453177;453178;453179;453180;453181;453182;453183;453184;453185;453186;453187;453188;453189;453190;453191;453192;453193;453194;453195;453196;453197;453198;453199;453200;453201;453202;453203	453142			79	
VLNNMEIGTSLFDEEGAK	1	Oxidation (M)	1981.9303	0.93027204	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.795	7	4	3							3	3	4	4	69.807	69.131	2;3	5.0547E-81	62549	160511_QHF_FH_JSI10i_1	240.43	224.3			1.0275	1.0166	9.9958	13	1	Median	1.2989	1.0644	4.8062	3	0	Plateau	0.81531	0.96966	1.8284	3	0	Median	1.1094	1.0928	3.9982	3	0	Plateau	0.96879	1.0688	16.376	4	1	Median	2874500000	1396200000	1478300000	355040000	153690000	201350000	865250000	446360000	418890000	867910000	373860000	494050000	786300000	422280000	364020000	55405	775	52185	336112;336113;336114;336115;336116;336117;336118;336119;336120;336121;336122;336123;336124;336125	453204;453205;453206;453207;453208;453209;453210;453211;453212;453213;453214;453215;453216;453217;453218;453219;453220;453221;453222;453223;453224;453225;453226;453227;453228	453217		290	25	
VLNNMEIGTSLFDEEGAKIVK	2	Unmodified	2306.1828	0.18279833	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	86.389	86.021	3	2.7623E-06	74717	160511_QHF_FH_JSI12i_3	73.21	59.479			1.12	1.2607	23.209	2	1	Median	NaN	NaN	NaN	0	0	Median	0.85921	1.0699	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.46	1.4856	NaN	1	0	Median	53139000	31872000	21268000	0	0	0	19434000	13973000	5460800	0	0	0	33705000	17899000	15807000	55406	775	52186	336126;336127	453229;453230;453231	453230			3	
VLNPPGGK	1	Unmodified	780.44939	0.4493882	4795	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	14.407	13.9	2	0.027512	11446	160511_QHF_FH_JSI10i_1	42.229	16.402			0.63454	0.69661	26.642	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.84815	0.99929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85335	0.89865	36.667	2	0	Median	390660000	219780000	170880000	0	0	0	113470000	63057000	50415000	0	0	0	277190000	156720000	120470000	55407	4795	52187	336128;336129;336130	453232;453233;453234;453235	453235			4	
VLNSLTQQEK	1	Unmodified	1158.6245	0.62445203	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		22.308	22.171	2	0.0081227	19230	160511_QHF_FH_JSI11i_1	60.298	37.911			0.17376	0.16902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17376	0.16902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	169060000	142440000	26620000	0	0	0	0	0	0	169060000	142440000	26620000	0	0	0	55408	3838	52188	336131	453236	453236			1	
VLNSYWVGEDSTYK	1	Unmodified	1659.7781	0.77805214	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.87	6.7	7	6	4				2	7	5	8	8	9	6	63.832	58.523	2;3	3.4685E-81	50951	160511_QHF_FH_JSI11i_2	248.41	238.97			0.99499	0.99153	24.656	29	4	Median	1.0811	0.94461	21.216	7	1	Median	0.89707	1.0856	29.537	7	0	Median	0.9778	0.95907	23.313	9	3	Median	0.97266	1.0557	16.691	6	0	Median	13781000000	6638200000	7142600000	2696400000	1171100000	1525300000	3590500000	1650000000	1940400000	4290500000	2216400000	2074100000	3203400000	1600700000	1602700000	55409	1951	52189	336132;336133;336134;336135;336136;336137;336138;336139;336140;336141;336142;336143;336144;336145;336146;336147;336148;336149;336150;336151;336152;336153;336154;336155;336156;336157;336158;336159;336160;336161;336162	453237;453238;453239;453240;453241;453242;453243;453244;453245;453246;453247;453248;453249;453250;453251;453252;453253;453254;453255;453256;453257;453258;453259;453260;453261;453262;453263;453264;453265;453266;453267;453268;453269;453270;453271;453272;453273;453274;453275;453276;453277;453278;453279;453280;453281;453282;453283;453284;453285;453286;453287;453288;453289;453290;453291;453292;453293;453294;453295;453296;453297;453298;453299;453300;453301;453302;453303;453304;453305;453306;453307;453308;453309;453310;453311;453312;453313;453314;453315;453316;453317;453318;453319	453289			82	
VLNTNIDGR	0	Unmodified	1000.5302	0.53015772	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.63	6.11	4	4	4				3	4		4	5	5	5	26.789	22.909	2	3.0712E-16	19364	160511_QHF_FH_JSI11i_2	172.21	107.44			0.94933	1.0025	10.81	19	0	Median	1.1767	0.9655	11.046	4	0	Median	0.94479	1.2466	10.928	5	0	Linear	0.98278	0.95646	10.603	5	0	Median	0.92937	0.99468	7.3181	5	0	Median	16235000000	8615000000	7619700000	3184200000	1460600000	1723600000	3651800000	1876200000	1775600000	5247200000	3069200000	2178000000	4151400000	2209000000	1942400000	55410	1993	52190	336163;336164;336165;336166;336167;336168;336169;336170;336171;336172;336173;336174;336175;336176;336177;336178;336179;336180;336181	453320;453321;453322;453323;453324;453325;453326;453327;453328;453329;453330;453331;453332;453333;453334;453335;453336;453337;453338;453339;453340;453341;453342;453343;453344;453345;453346;453347	453342			27	
VLNVPLCK	1	Unmodified	941.53682	0.536823	1074	P15328	FOLR1	Folate receptor alpha	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	1.75	0.433	1	3									1	2	1	46.463	45.646	2	0.011039	39212	160511_QHF_FH_JSI11i_2	54.549	35.767			0.52069	0.74863	30.542	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.94056	1.1432	NaN	1	0	Median	0.63342	0.62274	18.106	2	0	Median	0.7295	0.79181	NaN	1	0	Median	196560000	118670000	77895000	0	0	0	37244000	24103000	13141000	115140000	71341000	43799000	44180000	23224000	20956000	55411	1074	52191	336182;336183;336184;336185	453348	453348			1	
VLNWLLSYNPLWLR	0	Unmodified	1785.993	0.99301113	3486	Q8IZT6	ASPM	Abnormal spindle-like microcephaly-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	97.83	89.212	2;3	6.2725E-37	50636	160513_QHF_FH_JSI11Kac_6	180.88	122.51			1.1905	1.1327	26.841	5	1	Median	1.3108	1.1327	NaN	1	1	Median	1.1905	1.4238	NaN	1	0	Median	1.1149	1.0904	47.961	2	0	Median	0.97556	1.0598	NaN	1	0	Median	411730000	192900000	218830000	74562000	34297000	40265000	155280000	59210000	96073000	120960000	74197000	46763000	60928000	25198000	35730000	55412	3486	52192	336186;336187;336188;336189;336190	453349;453350;453351;453352;453353;453354;453355;453356	453350			7	
VLNYAPGPLDTDMQQLAR	0	Unmodified	2000.999	0.99896073	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	8	8								4	4	4	4	80.617	79.988	2;3	1.5826E-22	71170	160511_QHF_FH_JSI9i_1	170.66	148.61			1.0123	1.0484	15.028	16	0	Median	1.2595	1.0484	11.755	4	0	Median	0.95215	0.94259	16.793	4	0	Linear	1.0123	0.98336	7.5352	4	0	Median	0.94339	1.0227	24.195	4	0	Median	1280000000	658450000	621570000	224360000	102580000	121790000	291630000	160130000	131510000	391470000	196180000	195290000	372560000	199570000	172990000	55413	1433	52193	336191;336192;336193;336194;336195;336196;336197;336198;336199;336200;336201;336202;336203;336204;336205;336206	453357;453358;453359;453360;453361;453362;453363;453364;453365;453366;453367;453368;453369;453370;453371;453372;453373;453374;453375;453376;453377;453378;453379;453380;453381;453382;453383;453384;453385	453372			28	
VLNYAPGPLDTDMQQLAR	0	Oxidation (M)	2016.9939	0.99387535	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	63.92	63.282	2	0.0075025	57618	160511_QHF_FH_JSI12i_1	54.7	39.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55414	1433	52193	336207	453386	453386		1089	1	
VLPAHDASK	1	Unmodified	936.50288	0.50288033	2527	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	2	1	2	2	41.651	37.039	2	0.017453	32522	160511_QHF_FH_JSI9i_2	42.914	26.374			1.0436	0.94064	22.647	7	0	Median	1.0373	0.8715	10.796	2	0	Median	1.226	1.4911	NaN	1	0	Median	1.1343	1.1171	24.554	2	0	Median	0.92769	1.0253	18.699	2	0	Median	996380000	445350000	551030000	293320000	128880000	164440000	245230000	114340000	130890000	311420000	125920000	185500000	146400000	76213000	70189000	55415	2527	52194	336208;336209;336210;336211;336212;336213;336214	453387;453388;453389	453387			3	
VLPALLPS	0	Unmodified	808.50584	0.50584045	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.118	80.647	2	0.02504	73405	160511_QHF_FH_JSI11i_1	42.773	30.389			0.99508	0.9677	9.8305	4	0	Median	1.0665	0.90255	NaN	1	0	Median	0.88906	1.0133	NaN	1	0	Median	0.94464	0.92412	NaN	1	0	Median	1.0482	1.1199	NaN	1	0	Median	103640000	49629000	54008000	30963000	13839000	17124000	21440000	10655000	10785000	28269000	13829000	14440000	22964000	11306000	11658000	55416	1104	52195	336215;336216;336217;336218	453390;453391	453390			2	
VLPANSMAESR	0	Unmodified	1173.5812	0.58120701	1239	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	1	3	27.244	26.499	2	0.0023407	22141	160511_QHF_FH_JSI12i_2	61.593	37.825			0.99858	1.0644	23.981	6	2	Median	1.0957	0.99029	NaN	1	0	Median	0.88291	1.0644	5.731	2	1	Median	0.9101	0.89616	NaN	1	0	Median	1.452	1.5478	10.717	2	1	Median	306630000	134690000	171940000	47049000	21737000	25313000	96144000	46472000	49672000	65296000	33572000	31724000	98137000	32910000	65227000	55417	1239	52196	336219;336220;336221;336222;336223;336224;336225	453392;453393;453394;453395;453396;453397;453398;453399	453393			8	
VLPAPILQYGGR	0	Unmodified	1282.7398	0.73975656	5387	Q9UL18	AGO1	Protein argonaute-1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			50.88	42.272	3	0.036999	23284	160513_QHF_FH_JSI10Kac_6	23.226	0			1.8769	2.2379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8769	2.2379	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30838000	24214000	6624100	0	0	0	30838000	24214000	6624100	0	0	0	0	0	0	55418	5387	52197	336226	453400	453400			1	
VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR	0	Unmodified	3506.7318	0.73177723	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	94.208	86.098	3;4	9.3589E-50	46201	160513_QHF_FH_JSI12Kac_6	160.53	148.61			1.1249	1.1652	26	6	2	Median	1.6148	1.3751	NaN	1	0	Median	0.65707	0.78178	21.621	2	2	Median	1.2242	1.1776	NaN	1	0	Median	1.1249	1.1867	4.0764	2	0	Median	1029400000	526480000	502910000	145830000	61541000	84294000	197970000	142690000	55276000	270280000	126480000	143800000	415310000	195760000	219550000	55419	3213	52198	336227;336228;336229;336230;336231;336232	453401;453402;453403;453404;453405;453406	453403			6	
VLPAVGISYVVYENMK	1	Unmodified	1780.9433	0.94334333	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	2	2	2	2	99.632	98.832	3	6.6806E-06	89953	160511_QHF_FH_JSI11i_3	103.21	99.112			0.7838	0.927	80.664	8	3	Median	1.2084	1.0456	74.882	2	2	Median	0.2789	0.33735	143.24	2	1	Median	0.95881	0.91646	39.142	2	0	Median	0.94547	1.0224	14.143	2	0	Median	1012300000	762530000	249760000	62117000	26531000	35586000	628670000	573790000	54877000	163420000	96205000	67216000	158090000	66005000	92082000	55420	3071	52199	336233;336234;336235;336236;336237;336238;336239;336240	453407;453408;453409;453410;453411;453412;453413;453414	453407			8	
VLPAVGISYVVYENMK	1	Oxidation (M)	1796.9383	0.93825795	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	85.987	85.835	3	0.0064845	74466	160511_QHF_FH_JSI12i_3	48.823	40.909			1.4365	1.4917	1.9519	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4365	1.4917	1.9519	2	2	Median	31691000	13900000	17792000	0	0	0	0	0	0	0	0	0	31691000	13900000	17792000	55421	3071	52199	336241;336242	453415;453416	453415		2188	2	
VLPDVLQVSAAPPGPR	0	Unmodified	1614.9093	0.90934108	3944	Q969P0	IGSF8	Immunoglobulin superfamily member 8	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	77.498	76.664	3	0.0022205	66255	160511_QHF_FH_JSI12i_2	44.294	37.255			0.88984	0.94926	16.065	4	0	Median	1.4611	1.2786	NaN	1	0	Median	0.74302	0.94711	NaN	1	0	Median	0.91089	0.89684	NaN	1	0	Median	0.86929	0.95141	NaN	1	0	Median	56404000	29477000	26927000	12465000	4171500	8293700	12139000	8124600	4014400	12510000	6959500	5550400	19290000	10222000	9068100	55422	3944	52200	336243;336244;336245;336246	453417	453417			1	
VLPEFDTPGHTLSWGK	1	Unmodified	1782.8941	0.89408495	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.46	0.499		7	6							2	4	4	3	74.911	74.219	2;3	8.3224E-30	66281	160511_QHF_FH_JSI11i_3	184.03	165.76			1.0411	1.1051	19.622	11	4	Median	1.0937	0.90049	NaN	1	0	Median	0.86076	1.0154	23.808	4	2	Median	1.2678	1.2101	24.6	3	1	Median	1.0936	1.1051	19.22	3	1	Median	3708500000	1760900000	1947600000	42205000	19796000	22409000	453070000	253600000	199470000	1323200000	599250000	723950000	1890000000	888220000	1001800000	55423	874	52201	336247;336248;336249;336250;336251;336252;336253;336254;336255;336256;336257;336258;336259	453418;453419;453420;453421;453422;453423;453424;453425;453426;453427;453428;453429;453430;453431;453432;453433;453434;453435;453436;453437;453438;453439;453440;453441	453423			24	
VLPFFERPDFQLFTGNK	1	Unmodified	2054.0625	0.062547262	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		101.27	101.16	3	2.4142E-08	83729	160511_QHF_FH_JSI10i_3	136.63	119.55			0.87	0.96788	16.795	3	0	Plateau	0.87	0.69187	NaN	1	0	Median	0.72812	0.82638	NaN	1	0	Median	1.0262	0.96788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2759900000	1430200000	1329700000	437670000	232720000	204950000	701420000	402600000	298820000	1620800000	794870000	825900000	0	0	0	55424	4109	52202	336260;336261;336262	453442;453443;453444;453445	453444			4	
VLPGDYEILATHPTWALK	1	Unmodified	2023.0779	0.077862976	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	91.396	91.133	3	2.1337E-05	80711	160511_QHF_FH_JSI10i_2	77.468	67.71			0.98522	0.92415	29.483	5	4	Median	NaN	NaN	NaN	0	0	Median	0.6112	0.74635	NaN	1	0	Median	0.75471	0.70681	37.918	2	2	Median	1.0263	1.0837	3.1265	2	2	Median	482990000	269080000	213900000	0	0	0	124470000	79761000	44712000	140870000	82955000	57913000	217650000	106370000	111280000	55425	2638;2895	52203	336263;336264;336265;336266;336267;336268;336269	453446;453447;453448;453449;453450;453451;453452;453453;453454	453452			9	
VLPGHSVPLFK	1	Unmodified	1192.6968	0.69682911	3843	Q92547	TOPBP1	DNA topoisomerase 2-binding protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			3							2			1	53.794	52.666	2;3	0.00082452	43306	160511_QHF_FH_JSI9i_3	67.385	37.449			0.56365	0.56848	42.612	3	3	Plateau	1.016	0.83245	51.591	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56365	0.56848	NaN	1	1	Median	356680000	195720000	160960000	145140000	59603000	85537000	0	0	0	0	0	0	211540000	136110000	75427000	55426	3843	52204	336270;336271;336272	453455;453456;453457;453458	453456			4	
VLPGMHHPIQMK	1	Unmodified	1386.7264	0.72643146	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	2	3	4	34.9	34.211	2;3;4	9.1928E-12	28766	160511_QHF_FH_JSI12i_3	119.53	104.84			1.3649	1.2314	41.508	11	2	Median	1.4234	1.1508	20.077	3	1	Median	0.88578	1.0315	1.3194	2	0	Median	1.3649	1.2529	10.595	3	1	Median	1.6118	1.6701	87.469	3	0	Median	2596400000	1212100000	1384300000	670830000	272870000	397960000	427470000	234310000	193150000	585070000	271270000	313810000	912980000	433620000	479360000	55427	3897	52205	336273;336274;336275;336276;336277;336278;336279;336280;336281;336282;336283;336284	453459;453460;453461;453462;453463;453464;453465;453466;453467;453468;453469;453470;453471;453472;453473	453472			14	
VLPGMHHPIQMK	1	Oxidation (M)	1402.7213	0.72134608	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	27.177	26.165	3;4	0.0038149	19062	160511_QHF_FH_JSI9i_3	49.777	44.623			0.94296	0.84519	24.638	4	1	Median	1.3154	1.0829	33.717	2	1	Median	0.72325	0.83728	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85336	0.83015	NaN	1	0	Median	209840000	98817000	111020000	132580000	53003000	79577000	33277000	22395000	10882000	0	0	0	43979000	23419000	20560000	55428	3897	52205	336285;336286;336287;336288	453474;453475;453476;453477;453478	453477		2334;2335	5	
VLPGSSVLFLCDMQEK	1	Unmodified	1821.9005	0.90049224	3964	Q96AB3	ISOC2	Isochorismatase domain-containing protein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	92.958	92.664	2;3	1.9745E-07	80303	160511_QHF_FH_JSI12i_3	96.64	74.409			1.3134	1.3323	27.864	5	3	Median	NaN	NaN	NaN	0	0	Median	1.7561	2.069	NaN	1	1	Median	1.173	1.1385	22.225	2	1	Median	1.307	1.31	13.835	2	1	Median	239680000	110130000	129540000	0	0	0	8889900	3160000	5730000	87445000	41094000	46350000	143340000	65881000	77463000	55429	3964	52206	336289;336290;336291;336292;336293;336294	453479;453480;453481;453482;453483;453484	453484			6	
VLPGVDALSNI	0	Unmodified	1096.6128	0.61282471	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.67	4	4	3		1	2	4			6	4	3	5	82.339	78.118	2	3.4213E-07	83652	160511_QHF_FH_JSI11i_1	119.17	106.14			0.90769	0.97651	25.321	17	3	Median	1.1904	1.0003	38.248	5	1	Median	0.8264	0.9713	1.3747	4	0	Median	0.94052	0.92191	16.61	3	1	Median	0.92145	1.0327	17.933	5	1	Median	23788000000	11079000000	12709000000	6540600000	2846000000	3694600000	6784500000	3299900000	3484600000	5168600000	2350100000	2818400000	5294200000	2582900000	2711300000	55430	775	52207	336295;336296;336297;336298;336299;336300;336301;336302;336303;336304;336305;336306;336307;336308;336309;336310;336311;336312	453485;453486;453487;453488;453489;453490;453491;453492;453493;453494;453495;453496;453497;453498;453499;453500;453501;453502;453503;453504;453505;453506;453507;453508;453509;453510;453511;453512;453513;453514;453515;453516;453517	453488			30	
VLPIKPADVEEPAVPQTPR	1	Unmodified	2055.1364	0.13644049	4059	Q96EV2	RBM33	RNA-binding protein 33	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							2	2	1	1	64.219	63.62	3	0.00013593	56566	160511_QHF_FH_JSI11i_3	57.41	47.452			0.99409	0.92542	11.978	5	2	Median	1.1321	0.98792	20.595	2	2	Median	0.71041	0.87205	NaN	1	0	Median	0.99409	0.92542	NaN	1	0	Median	1.0283	1.0126	NaN	1	0	Median	215460000	116060000	99407000	54579000	30157000	24422000	39830000	26897000	12934000	77666000	33302000	44364000	43389000	25702000	17687000	55431	4059	52208	336313;336314;336315;336316;336317;336318	453518;453519;453520;453521;453522;453523	453518			6	
VLPILHGLGTDSHLVVK	1	Unmodified	1797.0513	0.051254295	4191	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		75.326	74.618	4	5.503E-05	66336	160511_QHF_FH_JSI11i_3	82.349	71.619			0.77301	0.79916	12.675	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78039	0.87409	NaN	1	1	Median	0.76571	0.73065	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56646000	28698000	27948000	0	0	0	20110000	10464000	9646000	36535000	18233000	18302000	0	0	0	55432	4191	52209	336319;336320	453524;453525	453524			2	
VLPIMFPALYR	0	Unmodified	1318.7472	0.74715012	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	98.578	95.732	2	5.9176E-13	90542	160511_QHF_FH_JSI11i_3	145.34	116.19			1.1313	1.057	18.058	12	2	Median	1.482	1.1642	12.036	3	0	Median	0.91279	1.047	33.176	3	0	Median	1.0995	1.0543	9.294	3	1	Median	0.97702	1.0194	11.148	3	1	Median	3295800000	1651300000	1644500000	707070000	312400000	394660000	1011000000	534400000	476630000	802530000	398760000	403770000	775220000	405790000	369430000	55433	2570	52210	336321;336322;336323;336324;336325;336326;336327;336328;336329;336330;336331;336332	453526;453527;453528;453529;453530;453531;453532;453533;453534;453535	453526			10	
VLPIQDNVSK	1	Unmodified	1111.6237	0.62372375	4975	Q9NRY5	FAM114A2	Protein FAM114A2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	40.37	39.758	2	0.026572	36012	160511_QHF_FH_JSI12i_1	48.091	23.869			1.5747	1.6633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5747	1.6633	NaN	1	1	Median	35958000	14212000	21747000	0	0	0	0	0	0	0	0	0	35958000	14212000	21747000	55434	4975	52211	336333	453536	453536			1	
VLPITVPK	1	Unmodified	865.56369	0.56368968	5412	Q9ULW0	TPX2	Targeting protein for Xklp2	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	1.8	0.4	1	4								1	1	2	1	56.068	55.225	2	0.054003	47404	160511_QHF_FH_JSI12i_2	36.395	21.62			1.0656	1.027	21.869	5	0	Median	1.2039	1.0167	NaN	1	0	Median	0.76876	0.94589	NaN	1	0	Median	1.3419	1.318	30.498	2	0	Median	0.90526	1.027	NaN	1	0	Median	246290000	118140000	128150000	39712000	18150000	21562000	39947000	22563000	17384000	115620000	53250000	62369000	51009000	24173000	26835000	55435	5412	52212	336334;336335;336336;336337;336338	453537	453537			1	
VLPLEALVTDAGEVTEAGK	1	Unmodified	1911.0201	0.020073325	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	101.83	101.73	3	1.2367E-09	92468	160511_QHF_FH_JSI11i_1	113.88	103.42			0.87431	0.82507	15.327	6	0	Median	0.98114	0.83322	NaN	1	0	Median	0.668	0.7899	NaN	1	0	Median	0.75267	0.75487	11.185	2	0	Median	0.9505	1.0245	3.9752	2	0	Median	898430000	451700000	446730000	140880000	65731000	75153000	123420000	57893000	65531000	306850000	159280000	147570000	327280000	168800000	158480000	55436	3860	52213	336339;336340;336341;336342;336343;336344	453538;453539;453540;453541	453539			4	
VLPLSVTHFYSATK	1	Unmodified	1561.8504	0.85042922	3153	Q6UWP2	DHRS11	Dehydrogenase/reductase SDR family member 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			9						2	3	3	3	2	70.284	68.118	2;3	5.5822E-05	57433	160511_QHF_FH_JSI10i_3	85.909	71.879			0.86862	0.93649	20.627	11	8	Median	1.2645	1.0116	25.821	3	2	Median	0.82122	0.94784	11.269	3	1	Median	0.86862	0.82541	28.118	3	3	Median	0.77787	0.8026	21.82	2	2	Median	1197600000	649520000	548100000	185530000	78461000	107070000	208390000	132460000	75933000	315620000	182810000	132800000	488080000	255790000	232300000	55437	3153	52214	336345;336346;336347;336348;336349;336350;336351;336352;336353;336354;336355	453542;453543;453544;453545;453546;453547;453548;453549;453550;453551;453552	453544			11	
VLPMNTGVEAGETACK	1	Unmodified	1675.7909	0.79094179	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	47.124	46.521	2;3	2.9375E-05	42306	160511_QHF_FH_JSI12i_1	128.85	116.98			0.94876	0.9752	22.939	7	0	Median	1.4995	1.1945	NaN	1	0	Median	0.91594	1.0753	18.752	2	0	Median	0.89276	0.85435	5.5464	2	0	Median	1.1803	1.2441	34.445	2	0	Median	314270000	150870000	163400000	25442000	10485000	14957000	66192000	37604000	28588000	127010000	62435000	64572000	95632000	40350000	55282000	55438	808	52215	336356;336357;336358;336359;336360;336361;336362	453553;453554;453555;453556;453557;453558;453559;453560	453555			8	
VLPPPAGYVPIR	0	Unmodified	1277.7496	0.74959297	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	1	3	1	67.955	67.284	2	4.2863E-05	58031	160511_QHF_FH_JSI12i_2	101.64	86.493			0.95846	1.0288	12.823	6	1	Median	1.2294	1.0439	NaN	1	0	Median	0.85807	1.0461	NaN	1	0	Median	1.007	1.0069	20.178	3	1	Median	0.91221	1.014	NaN	1	0	Median	883980000	444550000	439440000	166150000	69850000	96296000	161050000	92634000	68414000	346670000	168390000	178280000	210120000	113670000	96442000	55439	542	52216	336363;336364;336365;336366;336367;336368	453561;453562;453563;453564;453565;453566;453567;453568;453569;453570;453571;453572;453573;453574;453575	453565			15	
VLPPTVYLR	0	Unmodified	1056.6332	0.63316622	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	62.37	61.522	2	0.00018709	52794	160511_QHF_FH_JSI12i_3	86.095	64.548			1.2615	1.0539	13.326	5	1	Median	1.2442	1.0381	2.1345	2	1	Median	0.90337	1.0383	NaN	1	0	Median	1.2836	1.2033	NaN	1	0	Median	1.3745	1.3976	NaN	1	0	Median	310830000	144100000	166730000	67567000	27950000	39617000	50515000	28413000	22102000	74018000	34850000	39168000	118730000	52889000	65841000	55440	4819	52217	336369;336370;336371;336372;336373	453576;453577;453578;453579;453580;453581	453581			6	
VLPPVPTEGLTPDDVPALADR	0	Unmodified	2171.1474	0.1473991	4329	Q99943	AGPAT1	1-acyl-sn-glycerol-3-phosphate acyltransferase alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	95.564	95.201	2;3	3.7699E-05	84413	160511_QHF_FH_JSI9i_1	102.64	88.958			1.2117	1.1762	13.373	5	4	Median	1.3165	1.0732	22.516	2	1	Median	0.87045	1.0263	NaN	1	1	Median	1.2117	1.1762	NaN	1	1	Median	1.214	1.2209	NaN	1	1	Median	111020000	49726000	61289000	32805000	13567000	19237000	15013000	7396300	7617000	45766000	21041000	24725000	17431000	7720800	9710500	55441	4329	52218	336374;336375;336376;336377;336378;336379;336380;336381	453582;453583;453584;453585;453586;453587;453588;453589;453590;453591	453591			10	
VLPQLISTITASVQNPALR	0	Unmodified	2020.1681	0.16807497	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				101.57	101.39	3	4.256E-08	82297	160511_QHF_FH_JSI9i_3	98.573	93.671			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55442	3860	52219	336382	453592	453592			1	
VLPQLLTAFEFGNAGAVVLTPLFK	1	Unmodified	2544.4356	0.43558262	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	100.76	91.455	3	1.7294E-18	52900	160513_QHF_FH_JSI9Kac_6	109.39	102.11			1.2152	1.1602	0.19469	2	0	Median	1.3453	1.1586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0978	1.1618	NaN	1	0	Median	184010000	79301000	104710000	117330000	50554000	66780000	0	0	0	0	0	0	66675000	28747000	37928000	55443	4157	52220	336383;336384	453593;453594	453593			2	
VLPSDLDLLLHMNNAR	0	Unmodified	1819.9615	0.96145301	3772	Q8WUY1	THEM6	Protein THEM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	96.04	95.768	3	1.267E-07	82632	160511_QHF_FH_JSI12i_2	130.98	118.7			1.0637	1.0902	14.261	7	1	Median	1.108	0.95794	18.285	2	1	Median	0.91278	1.1243	NaN	1	0	Median	1.1525	1.1141	9.4451	2	0	Median	1.1351	1.2017	15.931	2	0	Median	414170000	207090000	207080000	70388000	31648000	38739000	71047000	33879000	37167000	146230000	72478000	73754000	126510000	69085000	57422000	55444	3772	52221	336385;336386;336387;336388;336389;336390;336391;336392	453595;453596;453597;453598;453599;453600;453601;453602;453603;453604;453605;453606;453607;453608;453609;453610	453598			16	
VLPSEQESTK	1	Unmodified	1116.5663	0.56626845	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			16.352	16.103	2	0.010322	13622	160511_QHF_FH_JSI10i_1	48.423	24.995			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55445	4253	52222	336393	453611	453611			1	
VLPSFWIPSLTPEAK	1	Unmodified	1683.9236	0.92359417	5554	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	101.7	101.64	2;3	1.8887E-06	90164	160511_QHF_FH_JSI10i_2	126.12	101.65			0.83114	0.81287	30.063	11	4	Median	1.1049	0.94888	38.316	2	1	Median	0.62946	0.75803	5.387	2	1	Median	0.91776	0.85214	31.899	4	2	Median	1.2248	1.2416	44.302	3	0	Plateau	2141000000	1113400000	1027600000	157700000	83590000	74106000	268020000	158630000	109380000	937750000	508040000	429710000	777510000	363140000	414380000	55446	5554	52223	336394;336395;336396;336397;336398;336399;336400;336401;336402;336403;336404	453612;453613;453614;453615;453616;453617;453618;453619;453620	453617			9	
VLPSHLITYK	1	Unmodified	1169.6808	0.6808447	2860	Q53LP3	SOWAHC	Ankyrin repeat domain-containing protein SOWAHC	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	47.309	47.188	3	0.00032388	40320	160511_QHF_FH_JSI12i_3	66.262	61.65			0.92548	0.91537	20.674	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83929	0.79087	NaN	1	1	Median	1.0205	1.0595	NaN	1	0	Median	238790000	117450000	121340000	0	0	0	0	0	0	123200000	63321000	59874000	115590000	54128000	61463000	55447	2860	52224	336405;336406	453621;453622	453622			2	
VLPSITTEILK	1	Unmodified	1212.7329	0.73293985	1424	P35232	PHB	Prohibitin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.67	4	4	4					4		4	4	4	4	82.088	78.991	2	3.8352E-07	71748	160511_QHF_FH_JSI9i_2	118.18	95.437			1.0462	1.0381	16.355	16	0	Median	1.1427	0.96572	29.705	4	0	Median	0.91127	1.0775	5.8504	4	0	Linear	1.0809	1.0413	2.8073	4	0	Median	1.0727	1.1298	9.7789	4	0	Median	5942000000	2979100000	2962900000	1110200000	582280000	527900000	1364100000	680490000	683640000	2082400000	1049600000	1032800000	1385300000	666740000	718550000	55448	1424	52225	336407;336408;336409;336410;336411;336412;336413;336414;336415;336416;336417;336418;336419;336420;336421;336422	453623;453624;453625;453626;453627;453628;453629;453630;453631;453632;453633;453634;453635;453636;453637;453638;453639;453640;453641;453642;453643;453644;453645;453646;453647;453648;453649;453650;453651;453652;453653	453641			31	
VLPSIVNEVLK	1	Unmodified	1209.7333	0.7332742	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	89.307	88.798	2	3.8352E-07	78810	160511_QHF_FH_JSI10i_2	118.18	107.47			0.97744	0.97577	13.841	11	0	Median	1.1448	0.94175	1.9015	2	0	Median	0.92911	1.1077	12.381	3	0	Median	0.97744	0.9491	9.1977	3	0	Median	0.90579	1.1869	20.717	3	0	Plateau	5924000000	3013800000	2910200000	917670000	463320000	454340000	964150000	500160000	463990000	1983600000	1029000000	954570000	2058600000	1021400000	1037300000	55449	4296	52226	336423;336424;336425;336426;336427;336428;336429;336430;336431;336432;336433	453654;453655;453656;453657;453658;453659;453660;453661;453662;453663;453664;453665;453666;453667;453668;453669;453670;453671;453672;453673;453674;453675;453676;453677;453678;453679;453680;453681;453682;453683;453684;453685;453686;453687;453688;453689;453690	453685			37	
VLPSIVNEVLKSVVAK	2	Acetyl (K)	1736.0448	0.044771933	4296	Q99623	PHB2	Prohibitin-2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		98.536	89.124	3	0.00067264	51023	160513_QHF_FH_JSI11Kac_6	88.133	70.851			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55450	4296	52227	336434	453691	453691	3117		1	
VLPSNAVWMENSK	1	Unmodified	1473.7286	0.72859953	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.6	1	6	3							2	4	3	1	59.707	59.049	2	0.00013099	51115	160511_QHF_FH_JSI11i_2	85.288	78.755			1.0738	1.0268	20.718	9	7	Median	1.3241	1.123	42.247	2	2	Median	0.86909	1.0268	19.239	3	3	Median	1.0738	1.0158	19.732	3	2	Median	1.1096	1.2408	NaN	1	0	Median	942220000	430760000	511460000	186540000	89052000	97490000	272390000	137200000	135190000	319050000	131300000	187760000	164230000	73205000	91028000	55451	5552	52228	336435;336436;336437;336438;336439;336440;336441;336442;336443;336444	453692;453693;453694;453695;453696;453697;453698;453699;453700;453701	453698			10	
VLPSNYNFEIPK	1	Unmodified	1419.7398	0.73981614	4563	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		71.52	70.783	2	0.0010807	62100	160511_QHF_FH_JSI11i_2	65.5	45.739			1.1209	1.0114	8.6332	2	0	Median	1.3009	1.0751	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96582	0.9515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	73001000	33556000	39445000	25688000	11644000	14044000	0	0	0	47313000	21912000	25401000	0	0	0	55452	4563	52229	336445;336446	453702	453702			1	
VLPSQTPQPAHHTPDTR	0	Unmodified	1880.9493	0.94930842	4148	Q96K21	ZFYVE19	Abscission/NoCut checkpoint regulator	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			21.805	20.601	3	0.011734	16939	160511_QHF_FH_JSI10i_3	41.554	23.637			0.83569	0.96075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83569	0.96075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11212000	6965700	4246700	0	0	0	11212000	6965700	4246700	0	0	0	0	0	0	55453	4148	52230	336447	453703	453703			1	
VLPTHDASK	1	Unmodified	966.51345	0.51344502	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.49		8	8					5	7	8	7	8	5	11.284	7.6904	2;3	0.00055425	6958	160511_QHF_FH_JSI9i_3	78.516	63.077			1.1003	1.06	21.99	26	2	Median	1.3619	1.1195	8.857	8	0	Median	1.0787	1.1399	29.438	6	1	Plateau	1.0025	1.0343	19.428	8	0	Median	0.8549	0.94531	27.164	4	1	Linear	8459400000	4221700000	4237700000	1697400000	728360000	969020000	1771600000	892210000	879420000	2802700000	1482400000	1320300000	2187700000	1118700000	1069000000	55454	1192	52231	336448;336449;336450;336451;336452;336453;336454;336455;336456;336457;336458;336459;336460;336461;336462;336463;336464;336465;336466;336467;336468;336469;336470;336471;336472;336473;336474;336475	453704;453705;453706;453707;453708;453709;453710;453711;453712;453713;453714;453715;453716;453717;453718;453719;453720;453721;453722;453723;453724;453725;453726;453727;453728;453729;453730;453731;453732;453733;453734;453735;453736;453737;453738;453739;453740;453741;453742;453743;453744;453745	453722			42	
VLPTIPK	1	Unmodified	766.49528	0.49527576	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.92	6.51	4	3					2	3		2	3	4	3	50.037	45.101	2	0.0077995	40560	160511_QHF_FH_JSI11i_1	86.086	21.31			0.93489	0.9555	17.571	12	0	Median	1.0625	0.8983	8.5876	2	0	Median	0.87123	0.99679	11.499	3	0	Median	0.96038	0.93671	9.0127	4	0	Median	0.91662	1.0256	31.05	3	0	Median	1221800000	640650000	581110000	261720000	123170000	138540000	125560000	61204000	64353000	487920000	259490000	228430000	346570000	196780000	149790000	55455	1438	52232	336476;336477;336478;336479;336480;336481;336482;336483;336484;336485;336486;336487	453746;453747;453748;453749;453750;453751;453752;453753;453754;453755;453756;453757;453758;453759;453760;453761	453748			16	
VLPTQPNPVDASR	0	Unmodified	1392.7361	0.73612775	3562	Q8N766	EMC1	ER membrane protein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	40.623	39.986	2	3.4225E-15	35861	160511_QHF_FH_JSI10i_1	157.38	142.23			1.1796	1.1237	6.5464	4	0	Median	1.3461	1.111	NaN	1	0	Median	0.92082	1.0717	NaN	1	0	Median	1.1778	1.1364	NaN	1	0	Median	1.1815	1.2492	NaN	1	0	Median	797570000	358700000	438860000	168490000	69385000	99109000	210220000	106320000	103900000	213630000	91674000	121960000	205220000	91323000	113900000	55456	3562	52233	336488;336489;336490;336491	453762;453763;453764;453765;453766;453767;453768;453769	453767			8	
VLPTYDASK	1	Unmodified	992.51786	0.51786169	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	14	0							3				1	1	1	39.906	30.132	2	0.006863	18290	160513_QHF_FH_JSI11Kac_4	61.962	9.3258			1.0032	1.1739	28.365	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0032	1.1739	NaN	1	0	Median	0.75789	0.74139	NaN	1	0	Median	1.1504	1.2444	NaN	1	0	Median	23630000	12230000	11400000	0	0	0	5397000	3276400	2120600	11847000	5855600	5991700	6385800	3098500	3287300	55457	512	52234	336492;336493;336494	453770;453771;453772	453770			3	
VLPVFYFAR	0	Unmodified	1110.6226	0.62260154	633	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	87.392	84.514	2	0.0094441	44164	160513_QHF_FH_JSI10Kac_6	70.67	37.119			1.5939	1.7523	124.1	2	2	Median	NaN	NaN	NaN	0	0	Median	3.4971	4.214	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72649	0.72863	NaN	1	1	Median	320440000	79215000	241220000	0	0	0	292180000	63427000	228750000	0	0	0	28261000	15788000	12474000	55458	633	52235	336495;336496	453773;453774	453774			2	
VLPVGVLYK	1	Unmodified	986.61645	0.61645353	2208	Q03393	PTS	6-pyruvoyl tetrahydrobiopterin synthase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	66.533	65.755	2	0.0014694	56727	160511_QHF_FH_JSI12i_2	68.915	35.364			1.1963	1.1952	17.43	5	0	Median	1.3856	1.2255	NaN	1	0	Median	1.2695	1.5432	NaN	1	0	Median	1.1963	1.1952	NaN	1	0	Median	0.95449	1.0258	9.4849	2	0	Median	203990000	96719000	107270000	36681000	16788000	19892000	53909000	25211000	28698000	53577000	24800000	28777000	59820000	29919000	29900000	55459	2208	52236	336497;336498;336499;336500;336501	453775;453776;453777;453778	453776			4	
VLPWFEQLLPLIVNLICPHRPWPDR	0	Unmodified	3107.6895	0.68952267	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.19	97.471	4	1.1488E-22	57704	160513_QHF_FH_JSI10Kac_6	130.65	102.24			0.84134	0.99427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84134	0.99427	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	345680000	171000000	174680000	0	0	0	345680000	171000000	174680000	0	0	0	0	0	0	55460	127	52237	336502	453779;453780	453780			2	
VLPWLGAIDDSVK	1	Unmodified	1411.7711	0.77111627	232	O14981	BTAF1	TATA-binding protein-associated factor 172	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		96.963	96.692	2	0.059335	84878	160511_QHF_FH_JSI11i_2	42.809	32.352			1.0596	1.0676	26.97	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0596	1.0676	26.97	2	2	Median	NaN	NaN	NaN	0	0	Median	37649000	22712000	14937000	0	0	0	0	0	0	37649000	22712000	14937000	0	0	0	55461	232	52238	336503;336504	453781;453782	453782			2	
VLQAAAK	1	Unmodified	699.42792	0.42792448	3926	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1.33	0.471	4	2								2	1	2	1	8.3829	8.0377	2	0.045762	5970	160511_QHF_FH_JSI12i_1	44.531	18.422			1.0487	0.97403	23.204	6	0	Median	1.0073	0.8606	15.526	2	0	Median	0.68233	0.805	NaN	1	0	Median	1.1543	1.1439	20.751	2	0	Median	1.2581	1.3123	NaN	1	0	Median	481330000	256140000	225190000	124380000	61993000	62386000	113160000	65999000	47164000	149360000	75366000	73998000	94427000	52783000	41643000	55462	3926	52239	336505;336506;336507;336508;336509;336510	453783	453783			1	
VLQALEGLK	1	Unmodified	969.58588	0.58588168	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.48	7	6	1					2		3	4	5	4	54.417	52.372	2	5.8402E-06	45890	160511_QHF_FH_JSI9i_2	114.28	63.649			0.53096	0.54544	146	16	15	Median	31.65	26.167	215.51	3	2	Plateau	0.65975	0.7824	149.62	4	4	Median	0.42545	0.42154	147.24	5	5	Median	0.45595	0.48146	106.1	4	4	Median	8478600000	4273000000	4205600000	849000000	99932000	749070000	3005100000	1650900000	1354200000	3170000000	1712800000	1457200000	1454500000	809370000	645140000	55463	1483	52240	336511;336512;336513;336514;336515;336516;336517;336518;336519;336520;336521;336522;336523;336524;336525;336526	453784;453785;453786;453787;453788;453789;453790;453791;453792;453793;453794;453795;453796;453797;453798;453799	453793			16	
VLQALEGLKMVEK	2	Acetyl (K);Oxidation (M)	1514.8378	0.83781563	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		80.546	69.978	3	0.042704	37135	160513_QHF_FH_JSI11Kac_5	30.998	23.087			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2796800	2796800	0	0	0	0	0	0	0	2796800	2796800	0	0	0	0	55464	1483	52241	336527	453800	453800			1	
VLQALGSEPIQYAVPVVK	1	Unmodified	1910.0877	0.08769938	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	4	3	4	87.139	86.588	2	2.0804E-16	78765	160511_QHF_FH_JSI12i_1	123.95	110.04			1.0376	0.92331	22.061	8	8	Median	1.1279	0.92331	2.0094	2	2	Median	1.0376	1.2684	4.0891	2	2	Median	0.99924	0.97875	15.493	2	2	Median	0.68698	0.72929	6.8035	2	2	Median	381190000	187170000	194010000	77903000	36010000	41892000	103720000	48966000	54752000	109730000	55433000	54302000	89831000	46766000	43065000	55465	100	52242	336528;336529;336530;336531;336532;336533;336534;336535;336536;336537;336538;336539;336540;336541	453801;453802;453803;453804;453805;453806;453807;453808;453809;453810;453811;453812;453813;453814	453805			14	
VLQAPPPDVGNGEVPK	1	Unmodified	1615.857	0.85697116	4253	Q96T23	RSF1	Remodeling and spacing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.28	47.741	2	0.00091317	43385	160511_QHF_FH_JSI12i_1	74.76	48.246			0.9832	0.97239	30.768	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80623	0.78227	NaN	1	1	Median	1.199	1.2087	NaN	1	1	Median	33764000	14735000	19029000	0	0	0	0	0	0	16124000	9568000	6556400	17640000	5166900	12473000	55466	4253	52243	336542;336543;336544;336545	453815;453816;453817;453818	453816			4	
VLQAQGSSDPEEESVLYSNR	0	Unmodified	2207.0342	0.03421984	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.119	49.442	2	8.1069E-267	44526	160511_QHF_FH_JSI10i_1	361.07	357.88			1.1358	1.1307	5.174	4	0	Median	1.5209	1.2427	NaN	1	0	Median	0.93273	1.1189	NaN	1	0	Median	1.1763	1.1426	NaN	1	0	Median	1.0968	1.1101	NaN	1	0	Median	506310000	250820000	255490000	124760000	51347000	73409000	127610000	71656000	55956000	124490000	66273000	58215000	129460000	61547000	67910000	55467	2707	52244	336546;336547;336548;336549	453819;453820;453821;453822;453823;453824;453825;453826	453824			8	
VLQASVLDDWFPLQGGQGQVHLR	0	Unmodified	2562.3343	0.33430545	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	100.98	100.96	3	2.3284E-17	87613	160511_QHF_FH_JSI12i_3	137.09	122.32			0.85285	0.87735	26.826	3	1	Median	1.0809	0.94061	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60651	0.57307	NaN	1	0	Median	0.85285	0.87735	NaN	1	0	Median	683610000	395180000	288430000	105390000	41425000	63960000	0	0	0	257410000	180460000	76948000	320810000	173290000	147520000	55468	4399	52245	336550;336551;336552	453827;453828;453829	453829			3	
VLQATVVAVGSGSK	1	Unmodified	1314.7507	0.75071518	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	5.78	6	6	6	1	4	10	8	6	8	12	14	13	16	46.874	39.395	2;3	1.1492E-55	23054	160513_QHF_FH_JSI11Kac_6	210.79	156.82			0.93921	1.001	27.443	55	1	Median	1.1439	0.9603	47.981	12	0	Median	0.82111	0.95882	7.359	14	0	Median	0.93921	0.98369	11.089	13	0	Median	1.0678	1.1501	16.701	16	1	Median	18546000000	8942100000	9604100000	6019700000	2813000000	3206700000	4357200000	2392800000	1964400000	3858200000	1913500000	1944700000	4311100000	1822900000	2488300000	55469	1959	52246	336553;336554;336555;336556;336557;336558;336559;336560;336561;336562;336563;336564;336565;336566;336567;336568;336569;336570;336571;336572;336573;336574;336575;336576;336577;336578;336579;336580;336581;336582;336583;336584;336585;336586;336587;336588;336589;336590;336591;336592;336593;336594;336595;336596;336597;336598;336599;336600;336601;336602;336603;336604;336605;336606;336607	453830;453831;453832;453833;453834;453835;453836;453837;453838;453839;453840;453841;453842;453843;453844;453845;453846;453847;453848;453849;453850;453851;453852;453853;453854;453855;453856;453857;453858;453859;453860;453861;453862;453863;453864;453865;453866;453867;453868;453869;453870;453871;453872;453873;453874;453875;453876;453877;453878;453879;453880;453881;453882;453883;453884;453885;453886;453887;453888;453889;453890;453891;453892;453893;453894;453895;453896;453897;453898;453899;453900;453901;453902;453903;453904;453905;453906;453907;453908;453909;453910;453911;453912;453913;453914;453915;453916;453917;453918;453919;453920;453921;453922;453923;453924;453925;453926;453927;453928;453929;453930;453931;453932;453933;453934;453935;453936;453937	453854			106	
VLQAVHR	0	Unmodified	821.48717	0.48717069	496	O75298	RTN2	Reticulon-2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		5.6655	-3.6987	2	0.015334	1814	160513_QHF_FH_JSI11Kac_6	74.832	28.481			0.25174	0.23906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25174	0.23906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9797900	7711500	2086400	0	0	0	0	0	0	9797900	7711500	2086400	0	0	0	55470	496	52247	336608	453938	453938			1	
VLQDLVMDILR	0	Unmodified	1313.7377	0.73770765	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	101.35	101.23	2	2.6771E-06	87085	160511_QHF_FH_JSI12i_2	135.86	81.702			0.97927	1.1647	6.8283	3	3	Median	NaN	NaN	NaN	0	0	Median	0.97927	1.2182	NaN	1	1	Median	1.1268	1.1647	NaN	1	1	Median	0.96129	1.0653	NaN	1	1	Median	1639800000	756790000	883000000	0	0	0	397180000	199210000	197970000	601840000	283350000	318480000	640780000	274220000	366550000	55471	1804	52248	336609;336610;336611	453939;453940;453941	453939			3	
VLQDMGLPTGAEGR	0	Unmodified	1442.7188	0.71876312	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	5.13	5	6					3			2	5	3	4	53.777	51.313	2;3	5.3237E-07	46457	160511_QHF_FH_JSI11i_1	138.45	123.48			1.111	1.1455	14.341	12	7	Median	1.2764	1.0615	14.475	2	1	Median	0.95689	1.1543	13.46	4	3	Median	1.1701	1.1488	9.5359	2	1	Median	1.1575	1.2294	20.515	4	2	Median	3526100000	1489500000	2036700000	994850000	342740000	652110000	920650000	430710000	489930000	754430000	342530000	411900000	856220000	373500000	482720000	55472	2325	52249	336612;336613;336614;336615;336616;336617;336618;336619;336620;336621;336622;336623;336624;336625	453942;453943;453944;453945;453946;453947;453948;453949;453950;453951;453952;453953;453954;453955;453956;453957	453942			16	
VLQDMGLPTGAEGR	0	Oxidation (M)	1458.7137	0.71367774	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.091	36.682	2	0.0023849	32811	160511_QHF_FH_JSI10i_1	61.989	43.677			0.9726	1.111	14.887	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.86925	1.011	NaN	1	0	Median	0.86747	0.85051	NaN	1	1	Median	1.0882	1.1439	NaN	1	0	Median	149210000	80989000	68221000	0	0	0	48575000	29499000	19075000	41182000	22592000	18590000	59453000	28897000	30556000	55473	2325	52249	336626;336627;336628	453958;453959;453960;453961	453961		1917	4	
VLQDWNALK	1	Unmodified	1085.5869	0.58694431	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	51.956	50.98	2	0.014102	43898	160511_QHF_FH_JSI11i_2	45.738	24.042			1.1797	1.3138	11.842	4	0	Median	1.8011	1.516	NaN	1	0	Median	1.1035	1.3612	NaN	1	0	Median	1.2612	1.2681	NaN	1	0	Median	1.0022	1.1443	NaN	1	0	Median	209980000	102570000	107410000	40436000	13716000	26720000	47278000	22550000	24728000	68883000	39894000	28990000	53381000	26410000	26971000	55474	641	52250	336629;336630;336631;336632	453962	453962			1	
VLQEALCVISGVPGLK	1	Unmodified	1681.9437	0.94367768	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		92.847	92.4	3	0.017598	81157	160511_QHF_FH_JSI11i_2	38.613	30.436			0.30526	0.2975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30526	0.2975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6873500	6002900	870620	0	0	0	0	0	0	6873500	6002900	870620	0	0	0	55475	3860	52251	336633	453963	453963			1	
VLQELDMSDFEEQFK	1	Unmodified	1856.8502	0.8502308	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	90.919	90.469	2	0.00017546	82317	160511_QHF_FH_JSI12i_1	106.49	87.747			1.146	1.1455	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.146	1.1455	NaN	1	1	Median	16708000	6852500	9855200	0	0	0	0	0	0	0	0	0	16708000	6852500	9855200	55476	697	52252	336634	453964	453964			1	
VLQGDLVMNVYR	0	Unmodified	1405.7388	0.73877028	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.62	4.72	2	4	1						1	2	3	1	2	67.379	65.479	2	2.432E-16	57834	160511_QHF_FH_JSI9i_2	166.19	111.58			0.91714	1.0161	21.117	8	6	Median	1.2508	1.0416	0.65347	2	1	Median	0.94123	1.0937	11.365	3	3	Median	0.7432	0.75792	NaN	1	1	Median	0.71895	0.78984	32.783	2	1	Median	2421800000	1237100000	1184700000	579830000	238220000	341610000	842790000	448270000	394520000	465950000	291510000	174440000	533250000	259100000	274150000	55477	1650	52253	336635;336636;336637;336638;336639;336640;336641;336642	453965;453966;453967;453968;453969;453970;453971;453972;453973;453974;453975	453972			11	
VLQGDLVMNVYR	0	Oxidation (M)	1421.7337	0.7336849	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.06		3					1	5		2	1	2	4	62.476	54.963	2	0.0012785	30193	160513_QHF_FH_JSI12Kac_4	74.162	55.382			0.80277	0.70754	29.556	9	5	Linear	1.8496	1.5665	42.958	2	2	Median	1.0841	1.3079	NaN	1	0	Median	0.93829	0.93701	7.5515	2	1	Median	0.68909	0.78338	21.689	4	2	Linear	184250000	99904000	84350000	13745000	5024800	8720700	6378000	3127100	3250900	51113000	27535000	23577000	113020000	64217000	48801000	55478	1650	52253	336643;336644;336645;336646;336647;336648;336649;336650;336651	453976;453977;453978;453979;453980;453981;453982;453983;453984;453985	453981		1325	10	
VLQGLLGPLFK	1	Unmodified	1183.7329	0.73288027	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							2	2	3	3	93.871	93.45	2	5.2438E-05	82695	160511_QHF_FH_JSI12i_3	95.099	0			1.3613	1.2618	30.297	10	3	Median	1.4911	1.2605	11.001	2	0	Median	1.1483	1.3226	36.904	2	2	Median	1.8634	1.6967	21.729	3	0	Plateau	1.3305	0.82199	34.368	3	1	Plateau	198630000	84828000	113810000	18239000	7590200	10649000	26075000	11504000	14570000	77156000	29572000	47583000	77165000	36161000	41004000	55479	3812	52254	336652;336653;336654;336655;336656;336657;336658;336659;336660;336661	453986;453987;453988;453989;453990;453991;453992;453993;453994;453995;453996	453995			11	
VLQGLLMPLFK	1	Unmodified	1257.7519	0.75190115	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		101.39	101.39	2	0.0089094	90420	160511_QHF_FH_JSI11i_3	49.536	34.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55480	3812	52255	336662	453997	453997			1	
VLQHEKQVYDIAAK	2	Acetyl (K)	1682.8992	0.89917033	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		53.195	42.436	3	0.0027466	23501	160513_QHF_FH_JSI11Kac_5	50.806	43.398			0.16257	0.16292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.16257	0.16292	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8423900	7116000	1307900	0	0	0	0	0	0	8423900	7116000	1307900	0	0	0	55481	93	52256	336663;336664	453998;453999	453999	60		2	
VLQHILNPAFLYSFEK	1	Unmodified	1918.0353	0.035269879	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	96.752	96.587	3	9.3493E-06	83060	160511_QHF_FH_JSI12i_3	97.235	79.729			0.9829	0.92746	46.456	2	1	Median	0.77868	0.66778	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2407	1.2881	NaN	1	0	Median	45739000	23484000	22256000	7049700	3769000	3280700	0	0	0	0	0	0	38689000	19715000	18975000	55482	5618	52257	336665;336666	454000;454001	454001			2	
VLQHMKAVQADQER	1	Acetyl (K)	1693.857	0.85698794	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		34.877	25.938	2;3	0.00034285	14483	160513_QHF_FH_JSI11Kac_6	88.507	77.873			0.97923	1.1562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97923	1.1562	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21245000	18418000	2826400	0	0	0	6038900	3212500	2826400	15206000	15206000	0	0	0	0	55483	3968	52258	336667;336668;336669	454002;454003;454004;454005	454002	3020		4	
VLQHMKAVQADQERER	1	Acetyl (K)	1979.0007	0.0006920621	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	31.845	23.099	4	0.0054751	13196	160513_QHF_FH_JSI10Kac_6	50.787	41.129			0.74009	0.81903	61.659	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0893	1.2612	NaN	1	0	Median	0.37975	0.37374	NaN	1	0	Median	0.74009	0.81903	NaN	1	0	Median	31907000	18569000	13337000	0	0	0	14230000	5974200	8255400	13552000	10275000	3276900	4124700	2319800	1804900	55484	3968	52259	336670;336671;336672	454006;454007	454007	3020		2	
VLQHYQESDK	1	Unmodified	1245.599	0.59896556	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	0			By matching	By MS/MS	2.5	0.5		1	1									1	1	8.8379	8.7874	3	0.030849	6187	160511_QHF_FH_JSI12i_3	24.51	15.78			0.82491	0.83198	27.366	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69587	0.68561	NaN	1	0	Median	0.97789	1.0096	NaN	1	0	Median	97193000	50058000	47135000	0	0	0	0	0	0	47322000	26959000	20363000	49871000	23098000	26772000	55485	5717	52260	336673;336674	454008	454008			1	
VLQHYQESDKGEELGPGNVQK	2	Unmodified	2354.1503	0.15025265	5717	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	4.75		6	6						2	3	4	5	2	32.091	30.111	3;4	3.7904E-18	26464	160511_QHF_FH_JSI9i_2	147.16	131.44			1.0816	1.0203	18.438	13	0	Median	1.211	1.0537	11.55	3	0	Plateau	0.97825	1.1507	32.633	4	0	Median	1.0679	1.0054	4.9123	4	0	Median	1.0831	1.1372	2.3942	2	0	Median	2701000000	1334300000	1366700000	351080000	171020000	180060000	661820000	346630000	315190000	1373600000	650560000	723000000	314570000	166080000	148490000	55486	5717	52261	336675;336676;336677;336678;336679;336680;336681;336682;336683;336684;336685;336686;336687;336688	454009;454010;454011;454012;454013;454014;454015;454016;454017;454018;454019;454020;454021;454022;454023;454024;454025;454026;454027;454028;454029;454030;454031;454032;454033;454034;454035;454036;454037;454038;454039;454040;454041	454024			33	
VLQIFNK	1	Unmodified	860.51199	0.51198846	1643	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	48.829	47.976	2	0.016497	40983	160511_QHF_FH_JSI12i_3	62.978	25.333			0.79545	0.64694	21.092	4	0	Linear	1.5111	1.201	NaN	1	0	Median	0.75717	0.88185	NaN	1	0	Median	0.83566	0.76982	NaN	1	0	Median	0.75113	0.76602	NaN	1	0	Median	336210000	176160000	160050000	51420000	23961000	27459000	64410000	35105000	29305000	72049000	29725000	42325000	148330000	87371000	60959000	55487	1643	52262	336689;336690;336691;336692	454042;454043;454044;454045;454046;454047	454047			6	
VLQIIPESMFTSLLK	1	Unmodified	1717.9688	0.9688298	2302	Q12768	KIAA0196	WASH complex subunit strumpellin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			102.3	102.24	3	0.0011732	90808	160511_QHF_FH_JSI10i_2	55.414	49.51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55488	2302	52263	336693	454048	454048			1	
VLQIVTNRDDVQGYAAK	1	Unmodified	1889.0007	0.0006752871	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							2	2	3	1	49.337	48.594	2;3	6.5998E-06	42974	160511_QHF_FH_JSI11i_3	153.38	147.54			0.95423	0.97763	16.029	8	1	Median	1.2292	1.028	1.9202	2	0	Median	0.75943	0.90517	9.8918	2	0	Median	1.0411	0.98457	11.37	3	0	Median	0.63819	0.66414	NaN	1	1	Median	1001800000	503560000	498200000	239660000	121310000	118350000	336250000	175210000	161040000	366470000	171390000	195080000	59375000	35643000	23732000	55489	726	52264	336694;336695;336696;336697;336698;336699;336700;336701	454049;454050;454051;454052;454053;454054;454055;454056;454057;454058;454059	454052			11	
VLQLEDDSLDSK	1	Unmodified	1360.6722	0.67219008	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	50.177	49.5	2	6.9825E-06	44516	160511_QHF_FH_JSI10i_1	121.36	112			1.0198	0.98196	6.9669	4	0	Median	1.1122	0.92017	NaN	1	0	Median	0.81747	0.97097	NaN	1	0	Median	1.0267	0.99308	NaN	1	0	Median	1.013	1.0875	NaN	1	0	Median	1889200000	1052800000	836320000	553120000	284610000	268500000	449630000	252240000	197380000	484990000	297360000	187630000	401410000	218610000	182810000	55490	2902	52265	336702;336703;336704;336705	454060;454061;454062;454063;454064	454063			5	
VLQLFTR	0	Unmodified	875.52289	0.52288749	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			54.793	53.229	2	0.020283	43661	160511_QHF_FH_JSI9i_3	60.799	38.346			0.87815	0.85926	1.5295	2	2	Median	1.0386	0.85001	NaN	1	1	Median	0.74249	0.8686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	218360000	125030000	93332000	120990000	67856000	53133000	97373000	57174000	40199000	0	0	0	0	0	0	55491	2605	52266	336706;336707	454065;454066	454066			2	
VLQLINDNTATALSYGVFR	0	Unmodified	2094.111	0.11095402	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.06	4.53		9	5						2	3	3	5	5	99.389	98.385	2;3	6.7052E-237	86545	160511_QHF_FH_JSI12i_2	409.55	364.94			1.0778	1.1363	27.12	16	8	Median	1.0652	0.91009	18.48	3	2	Median	0.83142	1.0255	43.412	3	1	Plateau	1.1402	1.1622	24.662	5	2	Median	1.0906	1.1918	16.75	5	3	Median	2220500000	1024000000	1196500000	333950000	155320000	178630000	284730000	158890000	125840000	936390000	385900000	550490000	665410000	323920000	341490000	55492	5633	52267	336708;336709;336710;336711;336712;336713;336714;336715;336716;336717;336718;336719;336720;336721;336722;336723	454067;454068;454069;454070;454071;454072;454073;454074;454075;454076;454077;454078;454079;454080;454081;454082;454083;454084;454085;454086;454087;454088	454070			22	
VLQLMLR	0	Unmodified	871.53134	0.53134369	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	59.137	58.259	2	0.0026382	49941	160511_QHF_FH_JSI12i_3	109.7	65.093			0.92835	0.93679	9.5944	8	0	Median	1.1581	0.96176	20.665	2	0	Median	0.78672	0.96469	11.878	2	0	Median	0.96475	0.9244	2.3956	2	0	Median	0.90137	0.97492	6.1529	2	0	Median	733790000	359800000	374000000	163890000	72690000	91203000	168000000	90609000	77391000	167390000	83384000	84003000	234510000	113120000	121400000	55493	1410	52268	336724;336725;336726;336727;336728;336729;336730;336731	454089;454090;454091;454092;454093;454094	454094			6	
VLQLMNLTDSR	0	Unmodified	1288.6809	0.68092105	5327	Q9UIA9	XPO7	Exportin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.25	0.433		3	1							1	1	1	1	68.291	67.644	2	0.00038161	59184	160511_QHF_FH_JSI11i_2	72.643	45.513			0.91824	0.9285	20.534	4	1	Median	1.1163	0.97233	NaN	1	0	Median	0.51901	0.6282	NaN	1	1	Median	0.89042	0.9044	NaN	1	0	Median	0.94694	0.95325	NaN	1	0	Median	235940000	121560000	114380000	45586000	21271000	24315000	75563000	44724000	30839000	62868000	32125000	30743000	51919000	23438000	28481000	55494	5327	52269	336732;336733;336734;336735	454095;454096;454097;454098	454097			4	
VLQLTSWDEDAWASK	1	Unmodified	1747.8417	0.84171503	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	83.824	83.253	2;3	4.4875E-30	75977	160511_QHF_FH_JSI11i_1	193.23	160.9			0.88532	0.98193	46.922	8	4	Median	0.7731	0.6602	NaN	1	1	Median	0.76492	0.89374	71.101	3	2	Plateau	0.94836	0.91942	20.087	2	1	Median	1.0936	1.1914	13.503	2	0	Median	857830000	442180000	415650000	151400000	85337000	66059000	292000000	143490000	148520000	228410000	117990000	110420000	186020000	95369000	90652000	55495	1139	52270	336736;336737;336738;336739;336740;336741;336742;336743	454099;454100;454101;454102;454103;454104;454105;454106;454107;454108;454109;454110;454111;454112;454113;454114;454115;454116	454100			18	
VLQLYPNNK	1	Unmodified	1087.6026	0.60259438	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.52	4	4	4				3	4	3	5	6	5	6	44.952	39.817	2	2.3489E-11	35138	160511_QHF_FH_JSI10i_2	160.91	112.41			1.0201	0.98767	17.217	22	3	Median	1.1438	0.91514	16.706	5	1	Median	0.75764	0.91662	21.089	6	2	Median	1.1153	1.0964	9.8845	5	0	Median	0.96208	1.045	17.035	6	0	Median	7313600000	3692200000	3621400000	1445100000	693880000	751200000	1920600000	1018200000	902360000	2021800000	981730000	1040100000	1926200000	998390000	927790000	55496	2193	52271	336744;336745;336746;336747;336748;336749;336750;336751;336752;336753;336754;336755;336756;336757;336758;336759;336760;336761;336762;336763;336764;336765	454117;454118;454119;454120;454121;454122;454123;454124;454125;454126;454127;454128;454129;454130;454131;454132;454133;454134;454135;454136;454137;454138;454139;454140;454141;454142;454143;454144;454145;454146;454147;454148;454149;454150;454151;454152;454153	454148			36	
VLQLYQITQINHGLMMVGPSGSGK	1	Oxidation (M)	2586.3298	0.3298137	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	1	2	2	86.41	81.527	3	6.2672E-78	40095	160513_QHF_FH_JSI12Kac_6	208.88	178.99			0.92188	0.89575	15.868	7	0	Median	1.3789	1.1326	13.497	2	0	Median	0.71517	0.85701	NaN	1	0	Median	1.0206	0.96219	16.232	2	0	Median	0.82585	0.84529	8.1987	2	0	Median	1482900000	738550000	744300000	472530000	190850000	281690000	511770000	299470000	212310000	312070000	146000000	166070000	186480000	102240000	84239000	55497	2517	52272	336766;336767;336768;336769;336770;336771;336772	454154;454155;454156;454157;454158;454159;454160;454161;454162;454163;454164;454165;454166	454164		1994;1995	13	
VLQLYQITQINHGLMMVGPSGSGK	1	Unmodified	2570.3349	0.33489907	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.47	6.31		2	9						6	4	6	4	3	92.615	89.577	3;4	1.7879E-93	44777	160513_QHF_FH_JSI10Kac_6	224.99	183.47			0.88937	0.85664	18.186	17	4	Median	1.1506	0.9613	21.05	4	1	Median	0.79614	0.94442	12.855	6	2	Median	0.89135	0.84843	18.872	4	1	Median	0.63685	0.6667	25.894	3	0	Plateau	4027500000	2075500000	1952000000	722170000	296900000	425280000	2010100000	1033700000	976420000	778290000	436970000	341320000	516960000	307970000	208990000	55498	2517	52272	336773;336774;336775;336776;336777;336778;336779;336780;336781;336782;336783;336784;336785;336786;336787;336788;336789	454167;454168;454169;454170;454171;454172;454173;454174;454175;454176;454177;454178;454179;454180;454181;454182;454183;454184;454185;454186;454187;454188;454189;454190;454191;454192;454193	454192			26	
VLQLYQITQINHGLMMVGPSGSGK	1	2 Oxidation (M)	2602.3247	0.32472832	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	2	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	80.842	71.712	3	4.722E-42	38845	160513_QHF_FH_JSI9Kac_6	161.66	147.65			0.97567	0.99818	9.32	3	0	Median	1.3086	1.1393	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97567	0.95171	NaN	1	0	Median	0.93401	0.99818	NaN	1	0	Median	192420000	95842000	96581000	75974000	33880000	42094000	0	0	0	31851000	17838000	14013000	84598000	44125000	40474000	55499	2517	52272	336790;336791;336792	454194;454195;454196;454197;454198	454195		1994;1995	5	
VLQNGGDK	1	Unmodified	829.42938	0.42938104	166	O00767	SCD	Acyl-CoA desaturase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.0996	4.7841	2	0.00018193	2753	160511_QHF_FH_JSI12i_1	122.13	64.665			1.0096	1.0067	15.028	4	0	Median	1.2586	1.0242	NaN	1	0	Median	0.99716	1.1989	NaN	1	0	Median	1.0223	0.98959	NaN	1	0	Median	0.80077	0.83117	NaN	1	0	Median	1951500000	993950000	957550000	302910000	125350000	177560000	602120000	316840000	285280000	538610000	271370000	267240000	507860000	280390000	227480000	55500	166	52273	336793;336794;336795;336796	454199;454200;454201;454202;454203;454204;454205	454201			7	
VLQNNNVDLVNIGSTDIVDGNHK	1	Unmodified	2477.251	0.25102933	1003	P11532	DMD	Dystrophin	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				80.609	79.267	3	0.039164	65159	160511_QHF_FH_JSI9i_3	19.722	5.991			1.0019	0.82804	NaN	1	0	Median	1.0019	0.82804	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22745000	12075000	10670000	22745000	12075000	10670000	0	0	0	0	0	0	0	0	0	55501	1003	52274	336797	454206	454206			1	
VLQPANLGSTLTPHHPPALPSK	1	Unmodified	2274.2485	0.24845055	4256	Q96T58	SPEN	Msx2-interacting protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.751	60.476	4	0.018697	52105	160511_QHF_FH_JSI12i_3	30.244	21.956			0.40572	0.41968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40572	0.41968	NaN	1	1	Median	37322000	25858000	11463000	0	0	0	0	0	0	0	0	0	37322000	25858000	11463000	55502	4256	52275	336798	454207	454207			1	
VLQPGTALFSR	0	Unmodified	1187.6663	0.66625727	1603	P47224	RABIF	Guanine nucleotide exchange factor MSS4	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		3	0			3							1	1	1		58.8	57.778	2	0.00051043	48399	160511_QHF_FH_JSI10i_3	82.749	67.087			0.91878	1.0311	22.375	3	0	Median	1.4995	1.194	NaN	1	0	Median	0.91878	1.0311	NaN	1	0	Median	0.8234	0.7694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	250590000	113080000	137500000	94405000	33034000	61371000	105690000	52437000	53253000	50494000	27614000	22880000	0	0	0	55503	1603	52276	336799;336800;336801	454208	454208			1	
VLQPHPVTPSDTETR	0	Unmodified	1675.8529	0.85294842	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	27.101	26.833	2;3	3.756E-05	23020	160511_QHF_FH_JSI11i_3	93.51	80.677			1.2359	1.1048	13.774	4	0	Median	1.3039	1.1098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1433	1.0709	3.7729	2	0	Median	1.4176	1.4195	NaN	1	0	Median	366940000	154960000	211980000	84990000	39965000	45025000	0	0	0	159000000	66167000	92830000	122960000	48831000	74127000	55504	1892	52277	336802;336803;336804;336805;336806;336807	454209;454210;454211;454212;454213;454214;454215;454216;454217	454212			9	
VLQQAFNYLNQGVVHSITWK	1	Unmodified	2344.2328	0.23280049	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.84			1						5	2	2	1	1	86.545	79.929	3	3.4637E-87	42460	160513_QHF_FH_JSI11Kac_6	223.44	192.33			0.96997	0.95424	29.776	6	4	Median	0.87583	0.73633	9.4482	2	1	Median	1.0329	1.2476	39.013	2	2	Median	1.0156	0.96174	NaN	1	0	Median	0.97953	1.0293	NaN	1	1	Median	1171600000	619170000	552400000	324560000	160360000	164200000	549920000	305520000	244410000	227040000	129300000	97739000	70046000	23990000	46057000	55505	287	52278	336808;336809;336810;336811;336812;336813	454218;454219;454220;454221;454222;454223;454224;454225;454226	454219			9	
VLQQFADNDVSR	0	Unmodified	1390.6841	0.68409218	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.58	4	4					3			2	4	2	3	38.219	34.909	2	3.394E-23	31563	160511_QHF_FH_JSI11i_1	180.36	130.94			0.99465	0.9723	16.242	11	2	Median	1.1042	0.93102	1.197	2	0	Median	0.7841	0.92373	19.718	4	2	Median	0.90068	0.91688	10.063	2	0	Median	1.0619	1.1376	3.5997	3	0	Median	1623600000	865870000	757690000	334290000	159250000	175040000	457790000	272270000	185520000	481180000	262640000	218540000	350300000	171710000	178590000	55506	1747	52279	336814;336815;336816;336817;336818;336819;336820;336821;336822;336823;336824	454227;454228;454229;454230;454231;454232;454233;454234;454235;454236;454237;454238;454239;454240;454241;454242;454243;454244	454228			18	
VLQQRPNANAVR	0	Unmodified	1364.7637	0.7636799	1880	P56524	HDAC4	Histone deacetylase 4	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	43.815	43.178	3	0.050757	39386	160511_QHF_FH_JSI12i_1	20.84	11.307			1.5924	1.6724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5924	1.6724	NaN	1	0	Median	77618000	28451000	49167000	0	0	0	0	0	0	0	0	0	77618000	28451000	49167000	55507	1880	52280	336825	454245	454245			1	
VLQQTLNYINQGVSHALTWK	1	Unmodified	2312.2277	0.22771511	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.24		5	8						3	6	3	4	3	92.59	90.573	2;3	4.9487E-139	83775	160511_QHF_FH_JSI11i_3	284.88	271.94			0.66458	0.75823	42.646	13	5	Median	1.1272	0.96974	41.481	5	3	Median	0.63628	0.75263	1.7259	3	0	Plateau	0.80588	0.75724	45.703	3	1	Median	0.41622	0.44092	56.944	2	1	Median	5188600000	2833000000	2355500000	1126800000	498260000	628540000	1914000000	1003200000	910770000	1398000000	853720000	544280000	749760000	477820000	271940000	55508	686	52281	336826;336827;336828;336829;336830;336831;336832;336833;336834;336835;336836;336837;336838;336839;336840;336841	454246;454247;454248;454249;454250;454251;454252;454253;454254;454255;454256;454257;454258;454259;454260;454261;454262;454263;454264;454265;454266;454267;454268;454269;454270;454271;454272;454273;454274;454275;454276;454277;454278	454249			33	
VLQSALAAIR	0	Unmodified	1040.6342	0.63422886	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.73	6.44	2	4	4					1	4	4	4	4	3	53.113	49.374	2	5.6215E-11	43508	160511_QHF_FH_JSI11i_3	146.69	83.978			0.96062	0.96493	36.871	15	1	Median	1.1196	0.94687	72.293	4	0	Median	0.80254	0.96685	16.699	4	1	Median	0.97893	0.96992	8.8058	4	0	Median	0.9962	0.99937	15.426	3	0	Plateau	5940500000	2990000000	2950500000	867610000	353410000	514200000	1417700000	725420000	692270000	1825000000	972960000	852060000	1830200000	938230000	891960000	55509	2324	52282	336842;336843;336844;336845;336846;336847;336848;336849;336850;336851;336852;336853;336854;336855;336856	454279;454280;454281;454282;454283;454284;454285;454286;454287;454288;454289;454290;454291;454292;454293;454294;454295;454296;454297	454280			19	
VLQSDEYEEVEDK	1	Unmodified	1581.7046	0.70461243	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.59	36.977	2	3.1307E-15	33242	160511_QHF_FH_JSI11i_1	158.41	136.32			1.1688	1.1292	12.072	4	0	Median	1.304	1.0888	NaN	1	0	Median	0.98321	1.1711	NaN	1	0	Median	1.4157	1.3951	NaN	1	0	Median	1.0476	1.072	NaN	1	0	Median	707950000	303640000	404300000	148060000	57034000	91031000	182320000	88655000	93669000	203300000	85595000	117700000	174260000	72360000	101900000	55510	287	52283	336857;336858;336859;336860	454298;454299;454300;454301;454302;454303;454304;454305;454306	454300			9	
VLQSFTVDSSK	1	Unmodified	1209.6241	0.62411768	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.41	5	4	1			2	2			3	4	5	2	42.421	39.055	2	1.7468E-05	34942	160511_QHF_FH_JSI10i_1	104.42	89.559			0.70701	0.83617	46.032	13	3	Median	2.3823	1.9797	107.47	3	2	Plateau	0.6032	0.73702	10.853	4	1	Median	0.82281	0.89535	11.871	4	0	Linear	0.79085	0.87115	32.681	2	0	Median	1252400000	669100000	583330000	285210000	137650000	147560000	357020000	208570000	148450000	355760000	187410000	168350000	254440000	135470000	118970000	55511	512	52284	336861;336862;336863;336864;336865;336866;336867;336868;336869;336870;336871;336872;336873;336874	454307;454308;454309;454310;454311;454312;454313;454314;454315;454316;454317;454318;454319;454320;454321;454322;454323;454324;454325;454326;454327;454328;454329;454330	454319			24	
VLQSLLGPMFK	1	Unmodified	1231.6999	0.69986558	3812	Q8WXI7	MUC16	Mucin-16	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	85.778	85.397	2	0.0006377	75223	160511_QHF_FH_JSI11i_2	74.464	48.905			0.79965	0.90684	39.464	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51127	0.47413	NaN	1	1	Median	0.84641	0.93697	4.6222	2	1	Median	35147000	20934000	14213000	0	0	0	0	0	0	13266000	8703100	4562900	21881000	12231000	9650300	55512	3812	52285	336875;336876;336877;336878;336879	454331;454332;454333;454334;454335	454334			5	
VLQSPATTVVR	0	Unmodified	1169.6768	0.67682195	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	36.797	36.062	2	0.00010884	30795	160511_QHF_FH_JSI11i_2	85.744	47.326			0.83282	0.92936	16.674	6	3	Median	1.1983	1.0284	NaN	1	0	Median	0.70558	0.84333	13.144	2	1	Median	0.82533	0.81656	18.893	2	1	Median	0.98653	1.1017	NaN	1	1	Median	654200000	371250000	282950000	109260000	57258000	52005000	180680000	103120000	77559000	244130000	142490000	101640000	120130000	68385000	51746000	55513	3709	52286	336880;336881;336882;336883;336884;336885	454336;454337;454338;454339;454340;454341;454342;454343	454342			8	
VLQTEQAVK	1	Unmodified	1014.571	0.5709599	4764	Q9H7C9	AAMDC	Mth938 domain-containing protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.293	15.823	2	4.4439E-06	13552	160511_QHF_FH_JSI12i_1	119.29	74.68			1.0503	0.94223	11.426	4	0	Linear	1.3667	1.1267	NaN	1	0	Median	0.96296	1.1167	NaN	1	0	Median	1.1457	1.1311	NaN	1	0	Median	0.83931	0.89524	NaN	1	0	Median	402120000	207030000	195080000	99891000	49561000	50331000	102950000	59362000	43593000	93466000	46049000	47417000	105810000	52062000	53744000	55514	4764	52287	336886;336887;336888;336889	454344;454345;454346;454347;454348	454345			5	
VLQTIGI	0	Unmodified	742.45889	0.45889025	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	62.391	61.689	2	0.021535	56111	160511_QHF_FH_JSI12i_1	56.51	46.204			0.9062	1.0601	8.5971	3	0	Plateau	1.3671	1.0971	NaN	1	0	Median	0.82776	0.98252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.9062	0.92615	NaN	1	0	Median	104940000	56846000	48096000	41600000	19538000	22062000	37424000	24184000	13241000	0	0	0	25917000	13124000	12793000	55515	4193	52288	336890;336891;336892	454349;454350;454351	454349			3	
VLQVLTNIFLYHDFSVQNFIK	1	Unmodified	2537.3682	0.36823134	5232	Q9UBD5	ORC3	Origin recognition complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			97.229	89.816	3	2.7548E-05	53163	160513_QHF_FH_JSI10Kac_6	114.87	85.743			4.7622	5.7117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.7622	5.7117	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	514810000	115470000	399340000	52881000	0	52881000	461930000	115470000	346460000	0	0	0	0	0	0	55516	5232	52289	336893;336894	454352;454353	454353			2	
VLQVSIGPGLPK	1	Unmodified	1206.7336	0.73360855	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.75	3	4	4					4		3	4	4	4	69.864	66.506	2	1.2376E-05	59278	160511_QHF_FH_JSI10i_2	116.52	78.79			1.0608	1.1413	20.412	15	0	Median	1.3723	1.1576	5.3568	3	0	Median	0.82969	0.98927	13.376	4	0	Median	1.1184	1.094	17.267	4	0	Median	1.0523	1.1807	35.564	4	0	Median	515880000	253430000	262440000	72013000	31754000	40259000	125990000	74680000	51307000	163130000	75094000	88035000	154750000	71906000	82841000	55517	2332	52290	336895;336896;336897;336898;336899;336900;336901;336902;336903;336904;336905;336906;336907;336908;336909	454354;454355;454356;454357;454358;454359;454360;454361;454362;454363;454364;454365;454366;454367;454368;454369;454370;454371;454372;454373;454374	454372			20	
VLQYYSAATEHDR	0	Unmodified	1551.7318	0.73177065	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6.67	6.6		2							1			2	1	38.074	28.593	3	0.001175	24318	160511_QHF_FH_JSI12i_2	46.408	39.369			0.99915	1.0216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99915	1.0216	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2236600	1202400	1034200	0	0	0	0	0	0	2236600	1202400	1034200	0	0	0	55518	1535	52291	336910;336911;336912	454375;454376;454377	454375			3	
VLRDNIQGITK	1	Unmodified	1255.7248	0.72483478	2019	P62805	HIST1H4A	Histone H4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		30.738	29.706	3	0.0039416	25463	160511_QHF_FH_JSI11i_3	55.261	41.582			0.99601	1.0297	39.954	4	4	Median	0.7779	0.62163	NaN	1	1	Median	1.2245	1.3759	17.486	2	2	Median	0.91709	0.87193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	598130000	304950000	293190000	207310000	101970000	105340000	282480000	141270000	141210000	108350000	61705000	46642000	0	0	0	55519	2019	52292	336913;336914;336915;336916	454378;454379;454380;454381;454382	454378			5	
VLREEQEHK	1	Unmodified	1166.6044	0.60438529	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			7							1	3	3		5.0321	4.7563	2;3;4	0.0054319	2648	160511_QHF_FH_JSI11i_3	40.727	29.408			0.78971	0.85378	13.294	7	1	Median	1.3467	1.114	NaN	1	0	Median	0.68248	0.78849	8.7361	3	1	Median	0.90154	0.85378	7.161	3	0	Median	NaN	NaN	NaN	0	0	Median	833950000	462620000	371330000	28246000	11383000	16864000	376060000	212100000	163950000	429650000	239130000	190520000	0	0	0	55520	2605	52293	336917;336918;336919;336920;336921;336922;336923	454383;454384;454385;454386;454387;454388;454389	454384			7	
VLRPQVTAVAQQNQGEVPEPQDMK	1	Unmodified	2661.3544	0.35444854	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			55.936	54.38	3	3.292E-09	44557	160511_QHF_FH_JSI9i_3	83.039	80.237			0.99696	0.99104	15.358	2	0	Median	1.3123	1.1047	NaN	1	0	Median	0.7574	0.88905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60315000	34228000	26086000	34547000	17500000	17047000	25768000	16729000	9039500	0	0	0	0	0	0	55521	2517	52294	336924;336925;336926	454390;454391;454392;454393;454394;454395;454396;454397	454396			8	
VLSAADK	1	Unmodified	702.3912	0.39120462	49	CON__P01966			yes	yes	0	0	0	0		By MS/MS		By MS/MS	13	0						2					1		1	10.614	3.3892	2	0.039409	4237	160513_QHF_FH_JSI12Kac_3	57.281	23.543		+	0.97966	1.103	9.8036	2	0	Median	NaN	NaN	NaN	0	0	Median	0.87245	1.0291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1001	1.1822	NaN	1	0	Median	15858000	9891400	5966900	0	0	0	7606700	5476300	2130300	0	0	0	8251600	4415000	3836500	55522	49	52295	336927;336928	454398;454399	454398			2	
VLSAMIR	0	Unmodified	788.45784	0.4578444	345	O43598	DNPH1	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	34.468	33.724	2	0.02555	29452	160511_QHF_FH_JSI11i_3	54.525	54.525			0.77881	0.57513	25.146	4	0	Linear	1.3969	1.1204	NaN	1	0	Median	0.73255	0.85731	NaN	1	0	Median	0.828	0.79256	NaN	1	0	Median	0.59143	0.60821	NaN	1	0	Median	1218400000	569290000	649120000	266330000	96737000	169590000	277430000	132960000	144470000	298110000	130410000	167700000	376540000	209190000	167360000	55523	345	52296	336929;336930;336931;336932	454400;454401;454402;454403	454400			4	
VLSAPPHFHFGQTNR	0	Unmodified	1706.8641	0.86412223	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.47	6.42			11						8	8	7	3	1	50.883	45.69	3;4	3.9581E-05	38235	160511_QHF_FH_JSI10i_3	89.136	78.478			0.99519	0.96759	19.247	17	7	Median	1.1254	0.90938	20.258	6	4	Median	0.75628	0.87415	22.852	7	2	Median	1.1001	1.0805	16.897	3	1	Median	0.99519	1.0601	NaN	1	0	Median	1664300000	844190000	820070000	641930000	294950000	346990000	902510000	490660000	411850000	79406000	38180000	41227000	40403000	20399000	20003000	55524	1284	52297	336933;336934;336935;336936;336937;336938;336939;336940;336941;336942;336943;336944;336945;336946;336947;336948;336949;336950;336951	454404;454405;454406;454407;454408;454409;454410;454411;454412;454413;454414;454415;454416;454417;454418;454419;454420;454421;454422;454423;454424;454425;454426	454404			23	
VLSASEVAALSSPASSAPHSGGK	1	Unmodified	2109.0702	0.070211415	4860	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	54.405	53.982	3	2.2511E-08	47805	160511_QHF_FH_JSI11i_3	80.412	73.81			1.0525	1.0558	35.53	3	1	Plateau	2.2395	1.9206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0933	1.0218	NaN	1	0	Median	1.0494	1.0558	NaN	1	0	Median	125550000	46062000	79488000	23648000	5262300	18386000	0	0	0	49729000	20609000	29121000	52173000	20191000	31981000	55525	4860	52298	336952;336953;336954	454427;454428;454429;454430;454431	454427			5	
VLSDLDQK	1	Unmodified	916.48656	0.48656157	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.2	0.4	8	2								3	3	1	3	17.363	16.792	2	0.0057109	14564	160511_QHF_FH_JSI12i_1	64.803	9.3622			1.4767	1.4249	188.92	10	2	Median	1.8172	1.6028	157.28	3	0	Median	2.2045	2.6896	259.28	3	1	Median	0.19572	0.19014	NaN	1	0	Median	0.18469	0.1951	218.18	3	1	Plateau	1898600000	1052700000	845850000	483870000	191800000	292070000	409360000	216740000	192620000	268860000	238380000	30485000	736460000	405790000	330680000	55526	4703	52299	336955;336956;336957;336958;336959;336960;336961;336962;336963;336964	454432;454433;454434;454435;454436	454433			5	
VLSDVDAFIAYVGTDQK	1	Unmodified	1839.9254	0.92544466	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	2	1	1	96.467	96.313	2;3	9.4451E-06	82890	160511_QHF_FH_JSI12i_2	66.673	60.963			0.39104	0.7042	30.695	5	4	Linear	1.0513	0.91011	NaN	1	1	Median	0.57227	0.67891	45.978	2	2	Median	0.52198	0.51283	NaN	1	1	Median	0.64921	0.7042	NaN	1	0	Median	218370000	134130000	84240000	27137000	10022000	17116000	124200000	78542000	45662000	41502000	29575000	11927000	25526000	15991000	9535900	55527	4831	52300	336965;336966;336967;336968;336969;336970	454437;454438;454439;454440;454441;454442;454443	454437			7	
VLSEAAISASLEK	1	Unmodified	1316.7187	0.71874635	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	59.937	59.2	2	7.5366E-05	53595	160511_QHF_FH_JSI11i_1	100.93	88.355			1.0138	0.95546	47.589	6	2	Median	1.2969	1.1147	48.675	2	1	Median	0.84358	1.0059	35.565	2	0	Median	1.1963	1.1554	NaN	1	0	Median	0.40854	0.41667	NaN	1	1	Median	419610000	204380000	215220000	107140000	44117000	63026000	218900000	113510000	105390000	61394000	21338000	40056000	32170000	25420000	6750500	55528	707	52301	336971;336972;336973;336974;336975;336976	454444;454445;454446;454447;454448;454449	454444			6	
VLSECSPLMNDIFNK	1	Unmodified	1765.8379	0.83789198	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	85.618	84.808	2	2.0109E-05	75414	160511_QHF_FH_JSI10i_2	84.289	70.862			1.1546	1.2121	41.235	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90507	0.90551	NaN	1	1	Median	1.473	1.6224	NaN	1	0	Median	55626000	25082000	30543000	0	0	0	0	0	0	33773000	15510000	18263000	21853000	9572500	12281000	55529	1804	52302	336977;336978;336979	454450;454451;454452	454452			3	
VLSEDAIR	0	Unmodified	901.4869	0.48689592	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	2	1	1	26.23	25.497	2	0.0099826	21392	160511_QHF_FH_JSI11i_2	55.531	29.637			1.0745	1.0185	28.144	6	0	Median	1.2727	1.0636	4.1608	2	0	Median	0.80305	0.94963	7.9365	2	0	Median	0.96102	0.98352	NaN	1	0	Median	1.8779	1.9568	NaN	1	0	Median	807900000	368570000	439330000	191520000	87492000	104030000	274380000	133430000	140950000	193640000	95876000	97763000	148360000	51772000	96589000	55530	1241	52303	336980;336981;336982;336983;336984;336985	454453	454453			1	
VLSEDEEDVDFDIIHNANDTFTVK	1	Unmodified	2764.2715	0.27154958	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	88.328	88.031	3	0.025141	79908	160511_QHF_FH_JSI10i_1	27.203	20.172			1.0701	1.1707	5.9748	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0397	1.2212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1014	1.1223	NaN	1	1	Median	46673000	19740000	26932000	0	0	0	28077000	10172000	17905000	0	0	0	18595000	9568600	9026900	55531	512	52304	336986;336987	454454;454455	454455			2	
VLSFIPPDGNFR	0	Unmodified	1360.7139	0.71393574	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	3	1	77.175	76.412	2	0.00012374	68209	160511_QHF_FH_JSI10i_2	102.06	90.91			0.47806	0.41096	53.276	7	7	Median	0.47806	0.40809	NaN	1	1	Median	0.51572	0.63615	66.733	2	2	Median	0.60564	0.6057	59.83	3	3	Median	0.29443	0.33131	NaN	1	1	Median	568510000	378750000	189770000	87553000	66069000	21484000	109270000	71603000	37671000	256410000	160170000	96242000	115270000	80905000	34369000	55532	5535	52305	336988;336989;336990;336991;336992;336993;336994	454456;454457;454458;454459;454460;454461;454462;454463;454464	454464			9	
VLSFTGTK	1	Unmodified	851.47527	0.4752686	2544	Q14562	DHX8	ATP-dependent RNA helicase DHX8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.634	8	4	1							3	3	3	4	43.213	42.493	2	0.013047	38115	160511_QHF_FH_JSI9i_1	52.683	43.443			0.93663	0.99156	21.762	13	0	Median	1.3367	1.1286	41.055	3	0	Plateau	0.84545	1.0397	10.621	3	0	Median	0.93663	0.94719	17.985	3	0	Median	0.93216	0.95879	16.641	4	0	Median	7186300000	3580000000	3606300000	1049900000	453270000	596580000	1866600000	963780000	902860000	2452600000	1227700000	1224900000	1817200000	935200000	881990000	55533	2544	52306	336995;336996;336997;336998;336999;337000;337001;337002;337003;337004;337005;337006;337007	454465;454466;454467;454468;454469;454470;454471;454472;454473;454474	454473			10	
VLSGDLGQLPTGIR	0	Unmodified	1424.7987	0.798728	2768	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		69.073	68.474	2	0.0073087	59933	160511_QHF_FH_JSI11i_2	60.641	17.199			0.66542	0.66331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66542	0.66331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30908000	20088000	10820000	0	0	0	0	0	0	30908000	20088000	10820000	0	0	0	55534	2768	52307	337008	454475	454475			1	
VLSGEFQIVNPHLLK	1	Unmodified	1692.9563	0.95629128	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.21		8	8						1	3	5	5	4	78.027	76.921	2;3	1.3806E-15	66987	160511_QHF_FH_JSI12i_3	168.3	159.35			0.98988	1.0286	29.865	16	6	Median	1.2511	1.0156	20.277	3	2	Median	0.70289	0.86171	47.793	5	3	Median	1.0644	0.99783	10.91	4	1	Median	1.0831	1.1394	14.547	4	0	Median	2905200000	1371300000	1533900000	140020000	51874000	88149000	524510000	290620000	233890000	1091000000	499270000	591760000	1149600000	529540000	620080000	55535	1242	52308	337009;337010;337011;337012;337013;337014;337015;337016;337017;337018;337019;337020;337021;337022;337023;337024;337025	454476;454477;454478;454479;454480;454481;454482;454483;454484;454485;454486;454487;454488;454489;454490;454491;454492;454493;454494;454495;454496;454497;454498;454499;454500;454501;454502;454503;454504;454505	454503			29	
VLSGISFEVPAGK	1	Unmodified	1302.7184	0.71835242	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.47	3	4						1		2	2	3	1	71.883	69.921	2	0.0019425	61536	160511_QHF_FH_JSI11i_2	59.265	46.649			1.0553	1.0585	10.326	8	2	Median	1.1973	1.007	6.2317	2	0	Median	0.94227	1.1383	1.6864	2	0	Median	1.0523	1.044	3.491	3	1	Median	1.242	1.3426	NaN	1	1	Median	284230000	136600000	147640000	51168000	23370000	27798000	76798000	43095000	33703000	112330000	50758000	61568000	43941000	19373000	24568000	55536	464	52309	337026;337027;337028;337029;337030;337031;337032;337033	454506;454507;454508;454509;454510;454511;454512;454513;454514	454512			9	
VLSGISFEVPAGKK	2	Unmodified	1430.8133	0.81331543	464	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	3	0			3							1	1		1	60.517	59.412	3	3.0388E-05	51154	160511_QHF_FH_JSI12i_3	79.614	74.437			1.1261	1.12	7.4996	3	0	Plateau	1.1819	0.98971	NaN	1	0	Median	0.87838	0.99418	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1261	1.1295	NaN	1	0	Median	219620000	111280000	108350000	19315000	9472000	9842900	39075000	17168000	21907000	0	0	0	161230000	84638000	76596000	55537	464	52310	337034;337035;337036	454515;454516	454516			2	
VLSGLEILSK	1	Unmodified	1057.6383	0.63831118	280	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.791	69.902	2	0.0005398	61203	160511_QHF_FH_JSI11i_2	71.451	39.131			1.1596	1.3104	25.977	4	0	Median	2.2279	1.882	NaN	1	0	Median	1.258	1.5436	NaN	1	0	Median	1.0688	1.1104	NaN	1	0	Median	0.98853	1.1125	NaN	1	0	Median	224700000	99714000	124980000	52910000	17123000	35787000	45512000	23680000	21833000	76945000	34361000	42585000	49332000	24551000	24781000	55538	280	52311	337037;337038;337039;337040	454517;454518;454519	454518			3	
VLSGQDTEDR	0	Unmodified	1118.5204	0.52038089	704	O95562	SFT2D2	Vesicle transport protein SFT2B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.5064	9.1409	2	2.2417E-06	6891	160511_QHF_FH_JSI11i_1	111.61	89.476			0.8912	0.91232	11.42	4	0	Median	1.3219	1.0708	NaN	1	0	Median	0.74184	0.85936	NaN	1	0	Median	0.99337	0.96855	NaN	1	0	Median	0.79954	0.83593	NaN	1	0	Median	745880000	377200000	368680000	174830000	67661000	107170000	199920000	109910000	90006000	207290000	103560000	103740000	163840000	96073000	67769000	55539	704	52312	337041;337042;337043;337044	454520;454521;454522;454523;454524;454525;454526;454527	454521			8	
VLSGTIHAGQPVK	1	Unmodified	1305.7405	0.74048484	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.63		7	6						2	3	5	4	3	26.591	24.873	2;3	3.1617E-05	21579	160511_QHF_FH_JSI10i_2	132.01	105.63			1.1227	1.1308	41.929	15	1	Median	1.1227	0.9733	14.766	3	0	Median	0.89456	1.0338	21.579	5	0	Median	1.591	1.5266	56.722	4	1	Median	1.9792	2.0204	34.174	3	0	Median	3195000000	1308500000	1886600000	332950000	143080000	189870000	635880000	354250000	281630000	782500000	274050000	508450000	1443700000	537090000	906620000	55540	2609	52313	337045;337046;337047;337048;337049;337050;337051;337052;337053;337054;337055;337056;337057;337058;337059	454528;454529;454530;454531;454532;454533;454534;454535;454536;454537;454538;454539;454540;454541;454542;454543;454544	454538			17	
VLSHNLCTVLK	1	Unmodified	1282.7067	0.70674187	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	41.314	40.733	2	0.0010439	34618	160511_QHF_FH_JSI12i_3	82.831	51.301			1.0546	0.91776	28.924	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.59681	0.70953	NaN	1	0	Median	0.75754	0.71606	NaN	1	0	Median	1.1123	1.1763	NaN	1	0	Median	115420000	62446000	52973000	0	0	0	19006000	10948000	8057700	37475000	24922000	12553000	58938000	26576000	32362000	55541	5289	52314	337060;337061;337062	454545;454546;454547	454547			3	
VLSHVNSGCQLLPQHQVPAY	0	Unmodified	2246.1266	0.12662086	1118	P17535	JUND	Transcription factor jun-D	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.67	56.67	3	0.007103	50238	160511_QHF_FH_JSI11i_3	36.481	27.246			0.95156	0.90952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95156	0.90952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29840000	17450000	12390000	0	0	0	0	0	0	29840000	17450000	12390000	0	0	0	55542	1118	52315	337063	454548	454548			1	
VLSIGDGIAR	0	Unmodified	999.57129	0.57129425	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.35	4		3				3	3		2	4	4	3	52.565	47.157	2	1.1362E-07	38768	160511_QHF_FH_JSI9i_3	121.62	68.452			1.0658	1.0729	9.5933	13	2	Median	1.3828	1.1188	5.1776	2	0	Median	0.9743	1.1506	8.8905	4	1	Linear	1.1184	1.0809	7.0987	4	0	Median	0.97276	1.0459	16.767	3	1	Median	3874500000	1806000000	2068500000	586580000	276280000	310300000	986990000	509830000	477160000	1847200000	783550000	1063600000	453770000	236360000	217400000	55543	1263	52316	337064;337065;337066;337067;337068;337069;337070;337071;337072;337073;337074;337075;337076	454549;454550;454551;454552;454553;454554;454555;454556;454557;454558;454559;454560;454561;454562;454563;454564	454560			16	
VLSIQSHVIR	0	Unmodified	1150.6822	0.68224168	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.51		3	9					1	8	7	5	5	4	41.584	36.859	2;3	5.6712E-09	19690	160513_QHF_FH_JSI9Kac_6	134.68	124.07			0.91332	0.93425	32.183	20	2	Median	1.3595	1.1392	43.981	7	1	Median	0.70115	0.85833	17.636	5	0	Median	0.81928	0.81345	16.164	5	0	Median	0.98703	0.69956	48.498	3	1	Plateau	2256500000	1226400000	1030100000	928080000	452330000	475750000	796160000	449250000	346910000	359800000	205020000	154780000	172470000	119780000	52684000	55544	165	52317	337077;337078;337079;337080;337081;337082;337083;337084;337085;337086;337087;337088;337089;337090;337091;337092;337093;337094;337095;337096;337097	454565;454566;454567;454568;454569;454570;454571;454572;454573;454574;454575;454576;454577;454578;454579;454580;454581;454582;454583;454584;454585;454586;454587;454588;454589;454590;454591;454592;454593	454583			29	
VLSKEFHLNESGDPSSK	2	Acetyl (K)	1914.9323	0.93232095	2164	Q01105	SET	Protein SET	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								3			1	2		60.47	49.654	2;3	0.00038885	27122	160513_QHF_FH_JSI11Kac_5	67.418	57.079			0.50736	0.55049	153.89	2	0	Median	NaN	NaN	NaN	0	0	Median	1.365	1.6344	NaN	1	0	Median	0.18858	0.18542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	215330000	169250000	46081000	0	0	0	34210000	16730000	17480000	181120000	152520000	28601000	0	0	0	55545	2164	52318	337098;337099;337100	454594;454595;454596;454597	454594	2283		4	
VLSLETSVNELNSQLNESK	1	Unmodified	2103.0695	0.069542713	2627	Q15075	EEA1	Early endosome antigen 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	83.708	83.105	3	0.0050018	73017	160511_QHF_FH_JSI11i_2	44.238	27.932			1.3857	1.3167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3857	1.3167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15495000	6252000	9243100	0	0	0	0	0	0	15495000	6252000	9243100	0	0	0	55546	2627	52319	337101;337102	454598;454599	454599			2	
VLSLLALVKPEVWTLK	2	Unmodified	1808.1175	0.11754295	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	3	1	2	1	98.943	93.618	2;3	1.0424E-117	88684	160511_QHF_FH_JSI12i_3	245.03	231.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55547	5391	52320	337103;337104;337105;337106;337107;337108;337109	454600;454601;454602;454603;454604;454605;454606	454606			7	
VLSLLALVKPEVWTLKEK	3	Acetyl (K)	2107.2657	0.26566375	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		96.718	87.312	3	0.0034454	49674	160513_QHF_FH_JSI11Kac_6	72.086	58.254			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85864000	85864000	0	0	0	0	0	0	0	85864000	85864000	0	0	0	0	55548	5391	52321	337110	454607	454607	3383		1	
VLSLLGADAVEQK	1	Unmodified	1341.7504	0.75038083	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	2	5								1	2	2	2	66.259	65.45	2;3	1.6366E-10	57114	160511_QHF_FH_JSI11i_2	150.46	120.71			1.1447	1.1449	60.293	7	2	Median	1.1447	0.99113	NaN	1	0	Median	1.1916	1.431	32.793	2	1	Median	1.1719	1.1545	1.1769	2	0	Median	2.156	2.4344	113.66	2	1	Median	408870000	194110000	214760000	58395000	30233000	28162000	117240000	53045000	64195000	158530000	75070000	83463000	74697000	35760000	38937000	55549	714	52322	337111;337112;337113;337114;337115;337116;337117	454608;454609;454610;454611;454612;454613;454614;454615;454616	454615			8	
VLSLLSAPLGSGGFTLLHAAAAAGR	0	Unmodified	2349.3169	0.31686447	4792	Q9H8Y5	ANKZF1	Ankyrin repeat and zinc finger domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.119	87.398	3	6.1475E-18	50132	160513_QHF_FH_JSI10Kac_6	166.59	120.56			1.3572	1.6253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3572	1.6253	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	518880000	210910000	307970000	0	0	0	518880000	210910000	307970000	0	0	0	0	0	0	55550	4792	52323	337118	454617	454617			1	
VLSLNFSECHTK	1	Unmodified	1433.6973	0.6972994	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	2	3	47.393	46.763	2;3	9.8027E-12	39778	160511_QHF_FH_JSI12i_3	131.13	124			1.0979	1.238	21.08	7	0	Median	NaN	NaN	NaN	0	0	Median	0.94837	1.13	18.94	2	0	Median	1.0073	0.95712	10.802	2	0	Median	1.3047	1.3417	14.524	3	0	Median	885150000	413150000	472000000	0	0	0	116290000	69560000	46726000	322840000	158630000	164220000	446020000	184960000	261060000	55551	5433	52324	337119;337120;337121;337122;337123;337124;337125	454618;454619;454620;454621;454622;454623;454624;454625;454626;454627	454625			10	
VLSMAPGLTSVEIIPFR	0	Unmodified	1829.0121	0.012091596	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							1	2	3	2	101.6	101.5	2;3	1.7317E-11	90653	160511_QHF_FH_JSI11i_3	185.59	161.74			1.0441	1.0874	12.783	8	0	Median	1.1917	1.016	NaN	1	0	Median	0.95915	1.1814	9.3312	2	0	Median	1.0876	1.1013	6.9267	3	0	Plateau	0.82117	0.92525	12.908	2	0	Median	2335600000	1185600000	1150000000	156730000	71767000	84966000	627620000	324540000	303070000	873230000	407220000	466020000	678000000	382050000	295950000	55552	678	52325	337126;337127;337128;337129;337130;337131;337132;337133	454628;454629;454630;454631;454632;454633	454628			6	
VLSMTGVGQTLVWCLHK	1	Unmodified	1928.0012	0.001209334	1337	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	2	1	1	86.869	81.006	3	4.3012E-33	43337	160513_QHF_FH_JSI10Kac_6	166.92	138.71			0.88448	0.81197	28.5	6	0	Median	0.92663	0.78247	7.263	2	0	Median	0.64116	0.75568	47.869	2	0	Median	0.82036	0.8004	NaN	1	0	Median	1.1177	1.2164	NaN	1	0	Median	438770000	234160000	204610000	66857000	34561000	32296000	218080000	117690000	100390000	93792000	55674000	38118000	60041000	26232000	33809000	55553	1337	52326	337134;337135;337136;337137;337138;337139	454634;454635;454636;454637;454638	454637			5	
VLSMTGVGQTLVWCLHKE	1	Unmodified	2057.0438	0.04380243	1337	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		84.362	76.89	3	7.3239E-06	43366	160513_QHF_FH_JSI10Kac_6	90.654	80.659			0.80585	0.86444	57.964	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1034	1.3024	NaN	1	0	Median	0.58851	0.57376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	255730000	135470000	120260000	0	0	0	168690000	87737000	80957000	87036000	47728000	39308000	0	0	0	55554	1337	52327	337140;337141	454639;454640	454640			2	
VLSPQDQDVQDNPR	0	Unmodified	1609.7696	0.76961272	30	A6NJ78	METTL15	Probable methyltransferase-like protein 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									2	1		1	26.633	25.612	2	0.00089278	22541	160511_QHF_FH_JSI10i_1	65.179	49.802			0.51226	0.50007	30.024	3	2	Plateau	0.96979	0.78854	14.256	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47342	0.48315	NaN	1	0	Median	108570000	60946000	47622000	76629000	41412000	35216000	0	0	0	0	0	0	31939000	19533000	12405000	55555	30	52328	337142;337143;337144;337145	454641;454642;454643;454644	454642			3	
VLSPYDLTHK	1	Unmodified	1171.6237	0.62372375	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	44.522	43.562	2;3	4.6603E-05	37258	160511_QHF_FH_JSI11i_2	79.201	68.444			0.81915	1.0215	61.074	7	3	Median	1.2671	1.0692	NaN	1	0	Median	0.42431	0.52179	94.999	2	1	Median	0.56922	0.58007	85.2	2	1	Median	0.72819	0.80394	39.808	2	1	Median	532940000	286510000	246430000	61325000	23085000	38240000	162210000	101630000	60581000	217660000	126750000	90918000	91740000	35048000	56693000	55556	5088	52329	337146;337147;337148;337149;337150;337151;337152	454645;454646;454647;454648;454649;454650;454651;454652;454653;454654;454655	454650			11	
VLSPYDLTHKGK	2	Acetyl (K)	1398.7507	0.75071518	5088	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15.5	0.5								1	1			2		62.582	51.666	3	0.0079062	27856	160513_QHF_FH_JSI11Kac_6	48.704	27.864			0.023862	0.023037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.023862	0.023037	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2117600	2091600	26027	0	0	0	0	0	0	2117600	2091600	26027	0	0	0	55557	5088	52330	337153;337154	454656;454657	454656	3307		2	
VLSQPMPPTAGEAEQAADQQER	0	Unmodified	2352.1016	0.1015879	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	51.9	51.28	3	7.8573E-06	46239	160511_QHF_FH_JSI11i_1	74.364	65.973			1.0371	1.1257	15.934	5	1	Median	1.2694	1.0562	NaN	1	0	Median	0.99904	1.1662	4.9967	2	0	Median	1.4853	1.4342	NaN	1	1	Median	0.91355	0.93454	NaN	1	0	Median	405940000	196460000	209480000	85650000	42649000	43001000	161080000	93737000	67339000	77829000	25199000	52630000	81383000	34878000	46505000	55558	5159	52331	337155;337156;337157;337158;337159	454658;454659;454660;454661;454662;454663;454664;454665;454666;454667	454658			9	
VLSQQAASVVK	1	Unmodified	1128.6503	0.65027285	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	3.99	2	4				1				3	1	1	2	28.02	24.691	2	2.848E-07	26020	160511_QHF_FH_JSI12i_1	136.36	59.883			0.88943	0.8047	22.677	7	2	Median	0.90145	0.70647	24.016	3	1	Median	0.66243	0.8047	NaN	1	1	Median	0.89843	0.91825	NaN	1	0	Median	0.84246	0.92258	4.2408	2	0	Median	819550000	432910000	386640000	192810000	100440000	92370000	93336000	57455000	35881000	162940000	81190000	81755000	370460000	193830000	176630000	55559	1359	52332	337160;337161;337162;337163;337164;337165;337166	454668;454669;454670;454671;454672;454673;454674;454675	454670			7	
VLSRPNAQELPSMYQR	0	Unmodified	1887.9625	0.96251564	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			6	5.79		1	2						1	1	3			50.541	47.372	3	3.7819E-08	39624	160511_QHF_FH_JSI10i_3	139.65	126.51			0.95569	1.1047	10.851	4	0	Median	1.0939	0.89988	NaN	1	0	Median	0.92401	1.1047	2.4843	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	497610000	270610000	226990000	136330000	66777000	69556000	361270000	203840000	157440000	0	0	0	0	0	0	55560	4296	52333	337167;337168;337169;337170	454676;454677;454678;454679;454680;454681	454677			6	
VLSRPNAQELPSMYQR	0	Oxidation (M)	1903.9574	0.95743026	4296	Q99623	PHB2	Prohibitin-2	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			3							1	2			38.973	37.482	3	0.018461	31204	160511_QHF_FH_JSI10i_3	39.685	19.846			0.79461	0.7728	24.704	2	0	Median	1.1109	0.9203	NaN	1	0	Median	0.56836	0.64894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123670000	65726000	57941000	75137000	38883000	36254000	48531000	26843000	21687000	0	0	0	0	0	0	55561	4296	52333	337171;337172;337173	454682;454683	454682		2433	2	
VLSSAASLPGSELPSSRPEGSQGGELSR	0	Unmodified	2754.3784	0.37841469	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		3	3							1	3	2		56.338	55.543	3	9.1197E-26	48664	160511_QHF_FH_JSI9i_2	129.23	116.67			1.1085	1.0481	22.262	4	1	Median	1.18	0.99978	NaN	1	0	Median	1.0412	1.2897	NaN	1	0	Median	0.96764	0.9129	26.198	2	1	Median	NaN	NaN	NaN	0	0	Median	169160000	86008000	83148000	50998000	23699000	27300000	53179000	25547000	27632000	64979000	36762000	28217000	0	0	0	55562	235	52334	337174;337175;337176;337177;337178;337179	454684;454685;454686;454687;454688;454689;454690;454691;454692;454693	454689			10	
VLSSIEQK	1	Unmodified	902.5073	0.50729701	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.4	9	6	7			1	6	1		7	10	8	5	18.997	15.802	2	3.8615E-17	1248	160513_QHF_FH_JSI9Kac_4	174.27	0			1.3	1.1846	103.6	30	25	Median	1.1026	0.99982	134.89	7	4	Median	1.0648	1.2555	93.831	10	9	Median	1.0442	1.0079	105.32	8	7	Median	1.7618	1.8314	103.95	5	5	Median	30772000000	16179000000	14593000000	7025500000	3562700000	3462800000	7708500000	3789200000	3919200000	7561600000	3918700000	3643000000	8476300000	4908900000	3567500000	55563	1385	52335	337180;337181;337182;337183;337184;337185;337186;337187;337188;337189;337190;337191;337192;337193;337194;337195;337196;337197;337198;337199;337200;337201;337202;337203;337204;337205;337206;337207;337208;337209	454694;454695;454696;454697;454698;454699;454700;454701;454702;454703;454704;454705;454706;454707;454708;454709;454710;454711;454712;454713;454714;454715;454716;454717;454718;454719;454720;454721;454722;454723;454724;454725;454726;454727	454709			34	
VLSSIRVPIIVPIMMLAIK	1	Unmodified	2092.288	0.28799587	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	1		By MS/MS			16	0									1		1			98.309	92.589	3	0.025567	54106	160513_QHF_FH_JSI10Kac_6	48.288	38.708			1.2284	1.4511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2284	1.4511	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	346590000	172970000	173620000	0	0	0	346590000	172970000	173620000	0	0	0	0	0	0	55564	107	52336	337210	454728	454728			0	
VLSSLGYHVVTFDYR	0	Unmodified	1754.8992	0.89917033	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	3	1	2	75.821	68.895	2;3	2.3811E-23	37775	160513_QHF_FH_JSI10Kac_6	163.99	141.3			0.8742	0.97685	13.989	6	1	Median	1.2232	1.0551	NaN	1	0	Median	0.81899	0.97227	14.255	3	1	Plateau	0.85029	0.81668	NaN	1	0	Median	0.89878	0.94613	NaN	1	0	Median	792560000	394500000	398050000	112490000	46054000	66435000	517560000	267710000	249840000	115120000	56635000	58485000	47394000	24103000	23291000	55565	3509	52337	337211;337212;337213;337214;337215;337216;337217	454729;454730;454731;454732;454733;454734;454735;454736;454737	454737			9	
VLSTDVDVILRK	1	Unmodified	1356.7977	0.79766537	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	62.719	62.134	3	1.9217E-05	55076	160511_QHF_FH_JSI11i_3	93.623	76.85			1.1374	1.0734	28.751	5	2	Median	1.3253	1.0931	NaN	1	0	Median	0.82342	1.0062	55.951	2	2	Median	1.1374	1.0734	NaN	1	0	Median	0.91777	0.92364	NaN	1	0	Median	375640000	198800000	176840000	34972000	17579000	17393000	71714000	36017000	35696000	106140000	62210000	43928000	162820000	82992000	79823000	55566	5002	52338	337218;337219;337220;337221;337222	454738;454739;454740;454741;454742;454743;454744	454738			7	
VLSTPDLEVR	0	Unmodified	1127.6186	0.61863837	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By matching			By MS/MS	1	0	2									1			1	52.303	51.37	2	2.6315E-05	46572	160511_QHF_FH_JSI12i_1	97.431	70.176			1.4587	1.3436	19.125	2	0	Median	1.4391	1.1737	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4785	1.5382	NaN	1	0	Median	917850000	392400000	525450000	438750000	168560000	270190000	0	0	0	0	0	0	479110000	223840000	255260000	55567	1804	52339	337223;337224	454745;454746	454745			2	
VLSTSTDLEAAVADALK	1	Unmodified	1702.8989	0.89889556	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			97.343	97.359	3	0.0012994	88286	160511_QHF_FH_JSI10i_1	57.52	45.828			0.49268	0.52375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49268	0.52375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7335200	5326000	2009200	0	0	0	7335200	5326000	2009200	0	0	0	0	0	0	55568	3266	52340	337225	454747	454747			1	
VLSTTKPFEYETPEMEK	2	Unmodified	2027.9762	0.9761596	2752	Q16666	IFI16	Gamma-interferon-inducible protein 16	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	55.599	55.478	3	2.0826E-05	47567	160511_QHF_FH_JSI12i_3	84.859	68.917			1.2106	1.1806	5.8253	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2023	1.133	NaN	1	0	Median	1.2189	1.2303	NaN	1	0	Median	408840000	163370000	245470000	0	0	0	0	0	0	197440000	75859000	121590000	211400000	87514000	123880000	55569	2752	52341	337226;337227	454748;454749	454749			2	
VLSTVHTHSSVK	1	Unmodified	1293.7041	0.70409934	2362	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.7		7	18						8	10	11	6	6	10.784	8.6458	2;3;4	2.4076E-13	6717	160511_QHF_FH_JSI9i_3	204.5	182.26			0.98071	1.0325	50.03	33	12	Median	1.2942	1.085	59.592	10	4	Median	0.87146	1.0543	55.72	11	6	Median	0.91302	0.87715	10.867	6	0	Median	0.9798	1.0294	52.054	6	2	Median	14640000000	6891600000	7748000000	3266300000	1344800000	1921500000	3949900000	1851900000	2098000000	2451200000	1156400000	1294800000	4972100000	2538400000	2433600000	55570	2362	52342	337228;337229;337230;337231;337232;337233;337234;337235;337236;337237;337238;337239;337240;337241;337242;337243;337244;337245;337246;337247;337248;337249;337250;337251;337252;337253;337254;337255;337256;337257;337258;337259;337260	454750;454751;454752;454753;454754;454755;454756;454757;454758;454759;454760;454761;454762;454763;454764;454765;454766;454767;454768;454769;454770;454771;454772;454773;454774;454775;454776;454777;454778;454779;454780;454781;454782;454783;454784;454785;454786;454787;454788;454789;454790;454791;454792;454793;454794;454795;454796;454797	454768			48	
VLSVAVYNHYK	1	Unmodified	1291.6925	0.69247202	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	4	4	3	3	47.008	41.22	2;3	2.9249E-15	21925	160513_QHF_FH_JSI9Kac_6	134.57	118.31			0.94354	1.0236	58.488	14	4	Median	1.231	1.0399	28.466	4	1	Median	0.82955	0.97891	14.607	4	0	Median	0.92901	0.86134	72.504	3	2	Median	1.1471	1.1605	114.54	3	1	Plateau	2521800000	1208700000	1313200000	601290000	269620000	331670000	659840000	354560000	305280000	528990000	252200000	276790000	731710000	332300000	399410000	55571	598	52343	337261;337262;337263;337264;337265;337266;337267;337268;337269;337270;337271;337272;337273;337274	454798;454799;454800;454801;454802;454803;454804;454805;454806;454807;454808;454809;454810;454811;454812	454804			14	
VLSVCPSNKPAIVEAGGMQALGK	2	Unmodified	2325.2185	0.21847233	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	67.685	66.855	3	8.962E-17	59362	160511_QHF_FH_JSI11i_3	132.14	120.19			0.81852	0.84402	55.134	6	1	Median	0.62558	0.51485	95.233	2	1	Median	0.55186	0.64709	55.371	2	0	Median	0.78701	0.74422	NaN	1	0	Median	0.99282	0.99412	NaN	1	0	Median	623110000	332840000	290270000	80544000	41397000	39147000	185500000	101100000	84401000	265500000	143430000	122070000	91558000	46906000	44652000	55572	1065	52344	337275;337276;337277;337278;337279;337280	454813;454814;454815;454816;454817;454818;454819;454820;454821;454822;454823;454824;454825;454826	454813			14	
VLSVCPSNKPAIVEAGGMQALGK	2	Oxidation (M)	2341.2134	0.21338695	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		57.59	56.822	3	4.0168E-07	50439	160511_QHF_FH_JSI11i_3	88.396	58.245			1.2376	1.3039	16.148	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2412	1.4616	NaN	1	1	Median	1.2341	1.1632	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39421000	11133000	28288000	0	0	0	17239000	5193900	12045000	22183000	5939000	16244000	0	0	0	55573	1065	52344	337281;337282	454827;454828;454829	454827		712	3	
VLSVETPLSIQAHPNK	1	Unmodified	1731.9519	0.95193418	1418	P34949	MPI	Mannose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	59.663	58.881	3	4.4499E-08	52023	160511_QHF_FH_JSI10i_2	137.73	126.46			1.1476	1.179	11.766	7	0	Median	1.2485	1.0625	14.711	2	0	Median	0.96725	1.2049	NaN	1	0	Median	1.1579	1.1312	10.466	2	0	Median	1.0735	1.1606	19.323	2	0	Median	1118600000	489700000	628940000	119640000	52928000	66714000	174510000	87064000	87445000	421770000	187260000	234510000	402720000	162450000	240270000	55574	1418	52345	337283;337284;337285;337286;337287;337288;337289	454830;454831;454832;454833;454834;454835;454836;454837;454838;454839;454840;454841;454842;454843	454841			14	
VLSVIGLK	1	Unmodified	827.54804	0.54803961	4474	Q9BVK2	ALG8	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	1	2	3	2	59.024	57.133	2	0.0057881	50561	160511_QHF_FH_JSI10i_2	64.567	20.45			0.84883	0.91656	11.894	8	0	Median	1.067	0.90953	NaN	1	0	Median	0.79038	0.94425	3.1217	2	0	Median	0.89496	0.9067	20.578	3	0	Median	0.87755	0.92891	10.525	2	0	Median	812140000	413060000	399080000	80925000	35643000	45282000	174180000	96904000	77273000	288650000	135790000	152860000	268380000	144720000	123660000	55575	4474	52346	337290;337291;337292;337293;337294;337295;337296;337297	454844;454845;454846;454847;454848;454849;454850;454851;454852;454853	454851			10	
VLSVPESTPFTAVLK	1	Unmodified	1586.892	0.89195969	1969	P61960	UFM1	Ubiquitin-fold modifier 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	6	8	4							5	5	4	4	90.865	90.3	2;3	6.5109E-05	78068	160511_QHF_FH_JSI12i_2	143.97	134.32			0.99646	1.0163	26.609	18	6	Median	1.1555	0.99211	26.889	5	1	Median	0.88042	1.0595	31.106	5	2	Median	0.95276	0.92405	12.542	4	1	Median	0.99604	1.0769	24.253	4	2	Median	1223600000	598440000	625130000	239560000	112910000	126640000	335460000	165440000	170020000	367630000	187190000	180440000	280920000	132890000	148030000	55576	1969	52347	337298;337299;337300;337301;337302;337303;337304;337305;337306;337307;337308;337309;337310;337311;337312;337313;337314;337315	454854;454855;454856;454857;454858;454859;454860;454861;454862;454863;454864;454865;454866;454867;454868;454869;454870;454871;454872;454873;454874;454875;454876;454877;454878;454879;454880;454881;454882;454883;454884;454885;454886;454887	454860			33	
VLSWIPSNNHQLQLAGALAIANFAR	0	Unmodified	2703.4609	0.46090294	1769	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.78	88.06	3	4.708E-38	50563	160513_QHF_FH_JSI10Kac_6	207.89	172.14			0.62764	0.72693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62764	0.72693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178370000	117770000	60602000	0	0	0	178370000	117770000	60602000	0	0	0	0	0	0	55577	1769	52348	337316	454888	454888			1	
VLTAEELNAAQTSVAYGCIK	1	Unmodified	2137.0725	0.072519601	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	72.585	72.211	3	1.4112E-07	65661	160511_QHF_FH_JSI11i_1	98.169	82.404			0.79606	0.78633	18.733	3	0	Median	NaN	NaN	NaN	0	0	Median	0.67806	0.78633	NaN	1	0	Median	0.79606	0.7822	NaN	1	0	Median	1.0539	1.0848	NaN	1	0	Median	297560000	141170000	156400000	0	0	0	103030000	57540000	45488000	94867000	46024000	48843000	99670000	37604000	62066000	55578	1818	52349	337317;337318;337319	454889;454890;454891;454892;454893;454894;454895	454890			7	
VLTANSNPSSPSAAK	1	Unmodified	1442.7365	0.73652168	5022	Q9NV56	MRGBP	MRG/MORF4L-binding protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				19.766	18.635	2	1.5375E-06	15707	160511_QHF_FH_JSI9i_1	147.24	101.24			4.2872	3.5707	NaN	1	1	Median	4.2872	3.5707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22968000	4105100	18863000	22968000	4105100	18863000	0	0	0	0	0	0	0	0	0	55579	5022	52350	337320	454896	454896			1	
VLTDHWSIPYK	1	Unmodified	1357.703	0.7030367	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									2	1		59.023	58.271	3	0.0097544	50495	160511_QHF_FH_JSI11i_2	44.616	31.479			1.2078	1.1279	29.942	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.1675	1.4247	33.038	2	2	Median	0.99402	1.03	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	92415000	42808000	49607000	0	0	0	56678000	25159000	31519000	35737000	17648000	18088000	0	0	0	55580	5468	52351	337321;337322;337323	454897;454898;454899	454897			3	
VLTDYYR	0	Unmodified	928.46543	0.46543219	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.433	1	3								1	2		1	30.113	29.211	2	0.01639	25556	160511_QHF_FH_JSI10i_2	63.148	42.866			0.88021	0.97855	9.7861	4	0	Median	1.0028	0.85316	NaN	1	0	Median	0.82408	0.99352	8.9508	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91246	1.0268	NaN	1	0	Median	637840000	330190000	307650000	144600000	59223000	85373000	225350000	123210000	102150000	0	0	0	267890000	147760000	120130000	55581	678	52352	337324;337325;337326;337327	454900;454901;454902;454903;454904;454905	454905			6	
VLTEDEMGHPEIGDAIAR	0	Unmodified	1951.9309	0.93094074	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.94	0.639	4	10	3							5	5	3	4	56.892	55.882	2;3	9.4719E-184	48487	160511_QHF_FH_JSI11i_2	347.29	323.22			1.012	1.0423	10.577	17	6	Median	1.2697	1.0423	6.8931	5	2	Median	0.98465	1.1998	10.358	5	2	Median	1.1585	1.1917	17.495	3	0	Median	0.91032	0.99528	6.4469	4	2	Median	18403000000	8602600000	9799900000	3938500000	1475300000	2463200000	4429600000	2246100000	2183400000	4999000000	2400300000	2598800000	5035500000	2480900000	2554600000	55582	1051	52353	337328;337329;337330;337331;337332;337333;337334;337335;337336;337337;337338;337339;337340;337341;337342;337343;337344	454906;454907;454908;454909;454910;454911;454912;454913;454914;454915;454916;454917;454918;454919;454920;454921;454922;454923;454924;454925;454926;454927;454928;454929;454930	454926			25	
VLTEDEMGHPEIGDAIAR	0	Oxidation (M)	1967.9259	0.92585536	1051	P14324	FDPS	Farnesyl pyrophosphate synthase	yes	yes	0	0	1	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.83	0.687	2	3	1							1	1	1	3	46.957	46.091	2;3	7.5866E-05	39412	160511_QHF_FH_JSI12i_2	66.12	48.631			1.0809	1.1181	8.7563	6	0	Median	1.1345	0.93005	NaN	1	0	Median	0.96895	1.1522	NaN	1	0	Median	1.1093	1.0851	NaN	1	0	Median	1.0532	1.1182	5.0063	3	0	Plateau	533480000	262340000	271130000	61937000	27780000	34157000	179940000	88087000	91857000	13533000	6751000	6782000	278060000	139730000	138340000	55583	1051	52353	337345;337346;337347;337348;337349;337350	454931;454932;454933;454934;454935;454936	454932		674	6	
VLTEIIASR	0	Unmodified	1000.5917	0.59169534	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.29	4	4	4				3	4	1	3	6	5	6	49.996	45.302	2	1.4006E-05	37997	160511_QHF_FH_JSI10i_3	109.71	54.273			1.0064	1.3545	13.907	20	0	Linear	1.5736	1.3126	17.694	3	0	Plateau	0.87954	1.0435	17.726	6	0	Median	1.1299	1.0901	11.794	5	0	Median	0.97266	1.0389	12.238	6	0	Median	12888000000	5976600000	6911800000	2225900000	863230000	1362700000	2767000000	1434500000	1332500000	4326300000	2026400000	2299900000	3569200000	1652500000	1916700000	55584	916	52354	337351;337352;337353;337354;337355;337356;337357;337358;337359;337360;337361;337362;337363;337364;337365;337366;337367;337368;337369;337370	454937;454938;454939;454940;454941;454942;454943;454944;454945;454946;454947;454948;454949;454950;454951;454952;454953;454954;454955;454956;454957;454958;454959;454960;454961;454962;454963;454964;454965;454966;454967	454944			31	
VLTELLEQER	0	Unmodified	1228.6663	0.66631685	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	3	1	55.826	55.207	2	1.4083E-06	48660	160511_QHF_FH_JSI10i_2	114.84	72.243			0.89653	1.0212	16.825	5	2	Median	NaN	NaN	NaN	0	0	Median	0.78699	0.92348	NaN	1	0	Median	1.0113	1.0456	22.837	3	2	Median	0.89653	1.0212	NaN	1	0	Median	948610000	513120000	435490000	0	0	0	88216000	47901000	40315000	565470000	284210000	281260000	294920000	181010000	113910000	55585	2409	52355	337371;337372;337373;337374;337375;337376;337377;337378	454968;454969;454970;454971;454972;454973;454974;454975;454976;454977	454977			10	
VLTELLEQERK	1	Unmodified	1356.7613	0.76127986	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	45.831	45.59	3	0.0028159	38988	160511_QHF_FH_JSI12i_3	53.967	34.572			0.89012	0.89621	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89012	0.89621	NaN	1	1	Median	35891000	25911000	9979900	0	0	0	0	0	0	0	0	0	35891000	25911000	9979900	55586	2409	52356	337379	454978	454978			1	
VLTFALSEEVRPQDTVSVIGGVAGGSK	1	Unmodified	2715.4443	0.44430941	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	94.848	94.716	3	2.1343E-17	84487	160511_QHF_FH_JSI11i_3	103.29	92.296			1.2437	0.96752	16.601	4	0	Linear	0.94342	0.79976	NaN	1	0	Median	0.71225	0.88469	NaN	1	0	Median	1.2254	1.152	NaN	1	0	Median	1.0198	1.0581	NaN	1	0	Median	137490000	65661000	71834000	29566000	15644000	13922000	24354000	11417000	12937000	46103000	19108000	26995000	37472000	19492000	17979000	55587	1862	52357	337380;337381;337382;337383	454979;454980;454981;454982;454983;454984;454985;454986	454981			8	
VLTFAYK	1	Unmodified	840.47454	0.47454032	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	46.605	45.62	2	0.032748	39066	160511_QHF_FH_JSI12i_2	50.966	34.039			1.2031	1.2189	17.007	3	0	Median	1.7707	1.5002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2031	1.2189	NaN	1	0	Median	0.95673	1.0709	NaN	1	0	Median	331380000	156810000	174570000	94943000	43149000	51793000	0	0	0	127620000	62934000	64690000	108810000	50726000	58085000	55588	1316	52358	337384;337385;337386	454987;454988;454989	454987			3	
VLTFDLTK	1	Unmodified	935.53278	0.53278348	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	61.992	61.081	2	0.033628	52351	160511_QHF_FH_JSI12i_2	40.882	14.943			0.80979	0.75894	20.495	4	0	Median	0.78912	0.68446	NaN	1	0	Median	0.55128	0.67875	NaN	1	0	Median	0.831	0.84154	NaN	1	0	Median	0.93779	1.0464	NaN	1	0	Median	399150000	215750000	183390000	78710000	43959000	34751000	89339000	52763000	36576000	110210000	61557000	48648000	120890000	57472000	63419000	55589	2560	52359	337387;337388;337389;337390	454990;454991	454990			2	
VLTFLPAK	1	Unmodified	887.54804	0.54803961	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.81	59.487	2	0.0076139	51067	160511_QHF_FH_JSI12i_2	58.981	25.243			1.0786	1.2124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0786	1.2124	NaN	1	0	Median	69167000	34675000	34493000	0	0	0	0	0	0	0	0	0	69167000	34675000	34493000	55590	3648	52360	337391	454992	454992			1	
VLTGVAGEDAECHAAK	1	Unmodified	1626.7672	0.76716988	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	2	3	2	24.9	24.165	2;3	5.7758E-07	20125	160511_QHF_FH_JSI11i_2	126.1	111.41			1.1573	1.1386	23.865	8	1	Median	1.3105	1.1192	NaN	1	0	Median	0.97329	1.1538	22.398	2	0	Median	0.86203	0.87187	24.913	3	1	Median	1.2586	1.3596	1.691	2	0	Median	1019900000	489830000	530100000	84421000	34944000	49477000	262590000	120990000	141590000	471000000	242430000	228570000	201930000	91471000	110460000	55591	686	52361	337392;337393;337394;337395;337396;337397;337398;337399;337400	454993;454994;454995;454996;454997;454998;454999;455000;455001;455002;455003;455004	455002			12	
VLTGYLNYMVQLGK	1	Unmodified	1597.8538	0.85380004	1550	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	2	1	1	3	89.053	83.093	2	3.0194E-17	43574	160513_QHF_FH_JSI11Kac_6	173.71	128.94			0.83251	0.76239	25.022	7	4	Median	0.80379	0.68901	12.247	2	2	Median	0.8906	1.0655	NaN	1	0	Median	0.73144	0.71009	NaN	1	0	Median	0.83251	0.82232	28.664	3	2	Median	396860000	207650000	189210000	124640000	63705000	60935000	91454000	49121000	42333000	68844000	39131000	29713000	111920000	55696000	56227000	55592	1550	52362	337401;337402;337403;337404;337405;337406;337407	455005;455006;455007;455008;455009;455010	455005			6	
VLTIDPTEFK	1	Unmodified	1161.6281	0.62814043	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	69.141	68.408	2	1.7597E-07	60877	160511_QHF_FH_JSI9i_1	133.57	102.5			1.0488	1.028	13.034	8	1	Median	1.1794	0.98739	7.7693	2	0	Median	0.83178	1.0138	24.963	2	0	Median	0.96799	0.95696	8.0588	2	0	Median	1.0637	1.1592	3.6851	2	1	Median	2549900000	1184300000	1365600000	561220000	240990000	320230000	696520000	330610000	365910000	667290000	301440000	365850000	624840000	311220000	313610000	55593	1805	52363	337408;337409;337410;337411;337412;337413;337414;337415	455011;455012;455013;455014;455015;455016;455017;455018;455019;455020;455021;455022;455023;455024;455025	455020			15	
VLTIDPTEFKFK	2	Acetyl (K)	1478.8021	0.80208205	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		88.045	77.555	2	0.0039885	40610	160513_QHF_FH_JSI11Kac_5	71.016	52.236			0.40591	0.38997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40591	0.38997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2563700	2047300	516330	0	0	0	0	0	0	2563700	2047300	516330	0	0	0	55594	1805	52364	337416	455026	455026	1826		1	
VLTLDHPDAVK	1	Unmodified	1206.6608	0.66083754	722	O95749	GGPS1	Geranylgeranyl pyrophosphate synthase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.949	35.605	3	0.0028672	30255	160511_QHF_FH_JSI12i_2	53.967	45.012			0.71107	0.791	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71107	0.791	NaN	1	1	Median	73519000	46537000	26982000	0	0	0	0	0	0	0	0	0	73519000	46537000	26982000	55595	722	52365	337417	455027	455027			1	
VLTLSDDLER	0	Unmodified	1159.6085	0.60846762	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								2	1	1	1	53.073	52.416	2	0.00038857	45440	160511_QHF_FH_JSI11i_2	76.1	54.249			0.94352	0.95607	14.026	4	1	Median	1.1212	0.9567	NaN	1	1	Median	0.80302	0.95544	NaN	1	0	Median	1.1086	1.1421	NaN	1	0	Median	0.77411	0.81012	NaN	1	0	Median	821560000	423490000	398080000	138080000	70488000	67590000	262230000	150840000	111390000	186120000	91652000	94464000	235140000	110510000	124630000	55596	1839	52366	337418;337419;337420;337421;337422	455028;455029;455030;455031;455032;455033;455034	455034			7	
VLTLSEDSPYETLHSFISNAVAPFFK	1	Unmodified	2911.4644	0.46437615	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.981	93.261	3	6.3409E-23	54648	160513_QHF_FH_JSI10Kac_6	127.14	113.24			0.59714	0.70603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59714	0.70603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	120080000	59411000	60672000	0	0	0	120080000	59411000	60672000	0	0	0	0	0	0	55597	2517	52367	337423	455035	455035			1	
VLTMAPGLITLEIVPFR	0	Unmodified	1869.0798	0.079777231	315	O43252	PAPSS1	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	102.49	102.38	3	1.0633E-06	90206	160511_QHF_FH_JSI11i_2	107.98	98.188			1.158	1.154	18.599	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.64194	0.79744	NaN	1	0	Median	1.158	1.154	NaN	1	0	Median	0.88776	0.99501	NaN	1	0	Median	112540000	55415000	57125000	0	0	0	24454000	16381000	8072500	51654000	23031000	28623000	36432000	16002000	20430000	55598	315	52368	337424;337425;337426	455036	455036			1	
VLTMPETCR	0	Unmodified	1105.526	0.52600031	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	34.811	33.91	2	0.00023652	28918	160511_QHF_FH_JSI11i_2	84.498	63.198			1.0296	1.2512	34.758	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0296	1.2512	NaN	1	0	Median	0.87195	0.89646	NaN	1	0	Median	1.6724	1.7962	NaN	1	0	Median	248740000	123920000	124810000	0	0	0	73006000	35464000	37542000	93838000	57268000	36570000	81893000	31192000	50701000	55599	4272	52369	337427;337428;337429	455037;455038;455039;455040	455038			4	
VLTPEEQLADK	1	Unmodified	1241.6503	0.65033243	571	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.02	4	2				4	2			2	4	3	3	44.224	39.459	2	1.1074E-05	35738	160511_QHF_FH_JSI11i_1	107.79	88.694			0.89783	0.95948	14.142	11	1	Median	0.98316	0.80271	NaN	1	0	Median	0.81656	0.96429	11.055	4	0	Median	1.021	1.0094	17.458	3	1	Median	0.74822	0.95333	11.448	3	0	Plateau	4379200000	2330900000	2048400000	608760000	311140000	297620000	1319500000	756160000	563380000	1306500000	692340000	614190000	1144400000	571230000	573180000	55600	571	52370	337430;337431;337432;337433;337434;337435;337436;337437;337438;337439;337440;337441	455041;455042;455043;455044;455045;455046;455047;455048;455049;455050;455051;455052;455053;455054;455055;455056;455057;455058;455059;455060	455044			20	
VLTPELYAELR	0	Unmodified	1302.7184	0.71835242	1017	P12277	CKB	Creatine kinase B-type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	3	2	2	71.984	71.206	2	9.9788E-10	63309	160511_QHF_FH_JSI10i_2	136.57	111.01			1.0032	1.112	15.814	9	0	Median	1.4141	1.1572	12.272	2	0	Median	1.0032	1.2274	8.184	3	0	Plateau	0.98822	0.9782	26.501	2	0	Median	0.93718	0.9884	23.015	2	0	Median	2722400000	1328200000	1394200000	506200000	201480000	304720000	704890000	365650000	339240000	842740000	391810000	450930000	668530000	369230000	299300000	55601	1017	52371	337442;337443;337444;337445;337446;337447;337448;337449;337450	455061;455062;455063;455064;455065;455066;455067;455068;455069;455070;455071;455072;455073;455074;455075	455074			15	
VLTPTQVK	1	Unmodified	884.53312	0.53311783	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.3	4	4	3			3	3	3	2	5	6	5	6	27.11	21.818	2	0.00063796	19707	160511_QHF_FH_JSI11i_1	101.64	34.608			0.97935	1.0127	11.92	22	0	Median	1.1051	0.9056	19.09	5	0	Median	0.85606	1.0217	14.345	6	0	Median	1.0332	1.0357	4.7378	5	0	Median	0.97146	1.0331	5.8912	6	0	Median	13502000000	6452000000	7050000000	2741700000	1201800000	1539800000	3535300000	1843300000	1692000000	4245900000	2001600000	2244300000	2979300000	1405300000	1573900000	55602	1343	52372	337451;337452;337453;337454;337455;337456;337457;337458;337459;337460;337461;337462;337463;337464;337465;337466;337467;337468;337469;337470;337471;337472	455076;455077;455078;455079;455080;455081;455082;455083;455084;455085;455086;455087;455088;455089;455090;455091;455092;455093;455094;455095;455096;455097;455098;455099;455100;455101;455102;455103;455104;455105;455106;455107;455108;455109;455110;455111;455112	455076			37	
VLTQEDFQK	1	Unmodified	1106.5608	0.56078914	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		29.738	29.509	2	0.013402	26368	160511_QHF_FH_JSI11i_1	56.434	34.986			1.2246	1.1873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2246	1.1873	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59974000	24176000	35798000	0	0	0	0	0	0	59974000	24176000	35798000	0	0	0	55603	5051	52373	337473	455113	455113			1	
VLTQMGSPSVR	0	Unmodified	1173.6176	0.61759251	2709	Q15796	SMAD2	Mothers against decapentaplegic homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		2	2							1	2		1	32.715	32.196	2	0.00038778	27810	160511_QHF_FH_JSI9i_2	81.525	36.19			0.89436	0.99416	10.567	2	1	Median	NaN	NaN	NaN	0	0	Median	0.74844	0.92259	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0687	1.0713	NaN	1	0	Median	131950000	62382000	69564000	0	0	0	71632000	30985000	40647000	0	0	0	60314000	31398000	28916000	55604	2709	52374	337474;337475;337476;337477	455114;455115;455116;455117;455118	455115			5	
VLTSAFSR	0	Unmodified	879.48142	0.48141661	4157	Q96KG9	SCYL1	N-terminal kinase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	29.987	29.285	2	0.037188	23918	160511_QHF_FH_JSI9i_3	40.098	16.126			0.80107	0.81362	9.6972	4	0	Median	1.0805	0.88434	NaN	1	0	Median	0.64626	0.7849	NaN	1	0	Median	0.89641	0.84338	NaN	1	0	Median	0.71587	0.70765	NaN	1	0	Median	407110000	217190000	189920000	87939000	37316000	50623000	87306000	51223000	36082000	105670000	59158000	46512000	126190000	69496000	56699000	55605	4157	52375	337478;337479;337480;337481	455119	455119			1	
VLTSDIEK	1	Unmodified	903.49131	0.49131259	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1				1	2	2	22.307	20.451	2	0.0028117	20265	160511_QHF_FH_JSI10i_1	84.568	34.448			0.69473	0.71335	46.472	5	3	Median	NaN	NaN	NaN	0	0	Median	0.47214	0.54586	NaN	1	1	Median	0.74278	0.73136	42.705	2	1	Median	1.0437	1.0782	58.425	2	1	Median	752520000	418210000	334310000	0	0	0	164070000	86397000	77673000	249930000	150220000	99710000	338520000	181590000	156930000	55606	1616	52376	337482;337483;337484;337485;337486	455120;455121;455122;455123;455124	455123			5	
VLTSEDEYNLLSDR	0	Unmodified	1652.7893	0.78934511	4572	Q9BZQ8	FAM129A	Protein Niban	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	62.383	61.754	2	0.00020923	55924	160511_QHF_FH_JSI10i_1	89.403	73.864			0.97909	0.82939	17.4	3	2	Median	0.97909	0.79703	NaN	1	1	Median	0.70846	0.82939	NaN	1	0	Median	1.1483	1.0968	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	282800000	144490000	138310000	83647000	50426000	33221000	90948000	40042000	50905000	108210000	54023000	54183000	0	0	0	55607	4572	52377	337487;337488;337489;337490;337491	455125;455126;455127;455128;455129;455130	455129			6	
VLTSEQK	1	Unmodified	803.43888	0.43888309	4574	Q9BZX2	UCK2	Uridine-cytidine kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	7.1516	6.741	2	0.039053	4375	160511_QHF_FH_JSI9i_1	47.849	24.829			1.1877	1.26	5.0537	3	0	Median	1.4209	1.1607	NaN	1	0	Median	1.0812	1.2727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1877	1.26	NaN	1	0	Median	571990000	265580000	306410000	171970000	78080000	93887000	193380000	97431000	95950000	0	0	0	206640000	90064000	116570000	55608	4574	52378	337492;337493;337494	455131;455132	455132			2	
VLTSGIFETK	1	Unmodified	1093.6019	0.60192568	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.86	1	4	3					2	1	3	1	5	2	55.468	52.067	2	0.00073346	44578	160511_QHF_FH_JSI12i_2	70.1	35.847			0.81673	1.013	9.0006	11	1	Linear	1.2003	0.82958	12.904	3	1	Plateau	0.79884	0.9665	NaN	1	0	Median	1.0364	1.013	8.702	5	0	Median	0.91179	0.979	13.033	2	0	Median	1455200000	743610000	711640000	269750000	132720000	137030000	228500000	131090000	97409000	519100000	262170000	256920000	437910000	217630000	220280000	55609	2048	52379	337495;337496;337497;337498;337499;337500;337501;337502;337503;337504;337505	455133;455134;455135;455136;455137;455138;455139;455140;455141;455142;455143;455144;455145;455146;455147	455134			14	
VLTTALLLQAGSALANYIHFSSYSK	1	Unmodified	2667.4272	0.42720278	3338	Q86V85	GPR180	Integral membrane protein GPR180	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		98.912	89.637	3	1.6333E-110	51384	160513_QHF_FH_JSI11Kac_6	231.9	211.65			0.94753	0.84885	21.343	2	0	Median	0.85355	0.72995	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0519	0.98713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	328570000	171630000	156940000	154290000	82130000	72165000	0	0	0	174280000	89503000	84773000	0	0	0	55610	3338	52380	337506;337507	455148;455149;455150	455148			3	
VLTTGYWPTQSATPK	1	Unmodified	1648.8461	0.84607213	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.198	58.804	2	0.001619	53066	160511_QHF_FH_JSI10i_1	74.698	57.262			0.48378	0.55119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48378	0.55119	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25846000	17274000	8572300	0	0	0	25846000	17274000	8572300	0	0	0	0	0	0	55611	2455	52381	337508	455151	455151			1	
VLTVINQTQK	1	Unmodified	1142.6659	0.66592292	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	6.41	8	8	7			4	3	5	6	10	9	11	11	36.817	32.011	2	2.9718E-34	29890	160511_QHF_FH_JSI12i_1	208.37	119.23			0.91931	0.97174	81.331	41	27	Median	1.2763	1.0659	81.932	10	8	Median	0.91931	1.0925	57.826	9	4	Median	0.91754	0.90686	63.383	11	8	Median	0.81134	0.87832	113.62	11	7	Median	29339000000	13923000000	15416000000	5810400000	2735300000	3075200000	7866000000	4292100000	3573900000	9482400000	4503900000	4978500000	6180400000	2391800000	3788700000	55612	1546	52382	337509;337510;337511;337512;337513;337514;337515;337516;337517;337518;337519;337520;337521;337522;337523;337524;337525;337526;337527;337528;337529;337530;337531;337532;337533;337534;337535;337536;337537;337538;337539;337540;337541;337542;337543;337544;337545;337546;337547;337548;337549	455152;455153;455154;455155;455156;455157;455158;455159;455160;455161;455162;455163;455164;455165;455166;455167;455168;455169;455170;455171;455172;455173;455174;455175;455176;455177;455178;455179;455180;455181;455182;455183;455184;455185;455186;455187;455188;455189;455190;455191;455192;455193;455194;455195;455196;455197;455198;455199;455200;455201;455202;455203;455204;455205;455206;455207;455208;455209;455210;455211;455212;455213;455214;455215;455216;455217;455218;455219	455169			68	
VLTWDVGK	1	Unmodified	916.50182	0.5018177	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.579	50.186	2	0.0096523	43052	160511_QHF_FH_JSI12i_2	64.207	37.605			0.42007	0.46168	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42007	0.46168	NaN	1	1	Median	222460000	161180000	61287000	0	0	0	0	0	0	0	0	0	222460000	161180000	61287000	55613	5535	52383	337550	455220	455220			1	
VLVAFGQR	0	Unmodified	888.51814	0.51813647	5506	Q9Y296	TRAPPC4	Trafficking protein particle complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		51.823	42.656	2	0.0038682	23453	160513_QHF_FH_JSI10Kac_6	84.359	53.055			1.0126	1.0732	8.8234	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96863	1.1423	NaN	1	0	Median	1.0586	1.0083	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54905000	27422000	27483000	0	0	0	36670000	18356000	18314000	18235000	9066000	9168800	0	0	0	55614	5506	52384	337551;337552	455221;455222	455222			2	
VLVAGDTMDSVK	1	Unmodified	1233.6275	0.6274885	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	44.595	43.661	2	0.00015269	38766	160511_QHF_FH_JSI9i_1	83.499	56.369			1.3588	1.2605	41.524	2	1	Median	1.1496	0.9398	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6061	1.6907	NaN	1	1	Median	273860000	115500000	158370000	129190000	49706000	79481000	0	0	0	0	0	0	144680000	65790000	78886000	55615	635	52385	337553;337554	455223;455224	455224			2	
VLVALASEELAK	1	Unmodified	1241.7231	0.72310344	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								5		1	2	1	1	75.517	64.953	2	2.3782E-05	32119	160513_QHF_FH_JSI12Kac_5	98.249	61.555			1.0063	0.99115	24.819	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.51018	0.60469	NaN	1	1	Median	1.015	0.99115	NaN	1	0	Median	0.72118	0.80625	NaN	1	0	Median	17195000	10032000	7163500	0	0	0	4922800	3261700	1661100	7256900	3657700	3599200	5015800	3112500	1903300	55616	6	52386	337555;337556;337557;337558;337559	455225;455226;455227;455228;455229;455230	455228			6	
VLVALYEEPEKPNSALDFLK	2	Unmodified	2274.2148	0.21475039	4264	Q99417	MYCBP	C-Myc-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	95.179	94.989	3	4.4738E-11	82393	160511_QHF_FH_JSI12i_3	127.78	119.6			1.0246	1.0941	11.856	5	0	Plateau	1.0246	0.86294	NaN	1	0	Median	0.76599	0.94306	NaN	1	0	Median	1.1934	1.0919	NaN	1	0	Median	0.92684	0.97233	16.684	2	0	Median	428480000	213190000	215290000	40274000	19363000	20911000	46203000	26500000	19703000	70190000	30613000	39577000	271810000	136710000	135100000	55617	4264	52387	337560;337561;337562;337563;337564	455231;455232;455233;455234;455235;455236;455237;455238;455239	455239			9	
VLVAQHDVYK	1	Unmodified	1170.6397	0.63970816	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.43		10	9					1	4	5	9	5	5	27.214	24.695	2;3	6.516E-10	21326	160511_QHF_FH_JSI9i_2	138.4	121.16			1.0346	0.95553	47.039	24	10	Median	1.0557	0.88512	22.814	5	0	Median	1.014	1.1764	63.121	9	8	Median	1.0698	1.0456	17.384	5	0	Median	0.92668	1.0328	55.404	5	2	Median	3943000000	1774900000	2168100000	636120000	253580000	382540000	1339100000	645670000	693420000	1259100000	523480000	735580000	708730000	352180000	356550000	55618	1041	52388	337565;337566;337567;337568;337569;337570;337571;337572;337573;337574;337575;337576;337577;337578;337579;337580;337581;337582;337583;337584;337585;337586;337587;337588	455240;455241;455242;455243;455244;455245;455246;455247;455248;455249;455250;455251;455252;455253;455254;455255;455256;455257;455258;455259;455260;455261;455262;455263;455264;455265;455266;455267;455268;455269;455270	455254			31	
VLVASATMDTAR	0	Unmodified	1233.6387	0.63872189	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	6.8	5.88		3					2			1	2	1	1	42.342	37.527	2	0.0071688	32108	160511_QHF_FH_JSI12i_2	51.436	50.608			0.8194	0.83405	12.784	5	2	Median	0.96877	0.83405	NaN	1	1	Median	0.6742	0.79544	20.914	2	1	Median	0.8194	0.82184	NaN	1	0	Median	0.87529	0.95025	NaN	1	0	Median	160000000	92108000	67897000	44805000	26467000	18338000	55427000	32602000	22825000	2277400	1347100	930280	57495000	31691000	25804000	55619	398	52389	337589;337590;337591;337592;337593	455271;455272;455273;455274	455271			4	
VLVASATMDTAR	0	Oxidation (M)	1249.6336	0.63363651	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	1	0		By MS/MS			14	0							1				1			33.628	24.176	2	0.036801	14451	160513_QHF_FH_JSI10Kac_4	38.303	26.71			0.93901	1.0966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93901	1.0966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1978000	987080	990930	0	0	0	1978000	987080	990930	0	0	0	0	0	0	55620	398	52389	337594	455275	455275			1	
VLVCGAGPIGMVTLLVAK	1	Unmodified	1797.0256	0.02563317	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	102.2	102.21	2;3	4.8057E-11	88970	160511_QHF_FH_JSI12i_3	163.99	140.14			1.4943	1.5239	33.436	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4943	1.5239	33.436	2	1	Median	238560000	105170000	133400000	0	0	0	0	0	0	0	0	0	238560000	105170000	133400000	55621	2160	52390	337595;337596	455276;455277;455278	455278			3	
VLVDDGWILAYCHVR	0	Unmodified	1814.9138	0.91377454	2835	Q4J6C6	PREPL	Prolyl endopeptidase-like	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	83.002	74.885	3	0.00023493	39444	160513_QHF_FH_JSI12Kac_6	72.891	60.336			0.69556	0.80004	31.485	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69556	0.80004	NaN	1	0	Median	0.71103	0.69922	NaN	1	0	Median	1.223	1.2741	NaN	1	0	Median	249770000	146010000	103770000	0	0	0	185360000	114270000	71094000	43961000	22156000	21805000	20449000	9582900	10866000	55622	2835	52391	337597;337598;337599	455279;455280	455279			1	
VLVDGEEHVGFLK	1	Unmodified	1440.7613	0.76127986	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							2	3	4	3	57.383	56.656	2;3	1.6131E-05	48600	160511_QHF_FH_JSI12i_2	86.262	73.077			1.0509	1.0314	18.823	12	7	Median	1.1017	0.93337	8.9655	2	1	Median	0.93719	1.1286	26.283	3	1	Median	1.202	1.1224	20.412	4	3	Median	0.96087	1.0697	14.362	3	2	Median	1048100000	521450000	526610000	123820000	55445000	68379000	184130000	102760000	81370000	419410000	185730000	233670000	320700000	177510000	143190000	55623	4892	52392	337600;337601;337602;337603;337604;337605;337606;337607;337608;337609;337610;337611	455281;455282;455283;455284;455285;455286;455287;455288;455289;455290;455291;455292;455293;455294;455295;455296	455284			16	
VLVDMSR	0	Unmodified	818.43202	0.43202358	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	5.99	2	4	1				3	1		3	2	3	3	33.693	29.616	2	0.0013855	25298	160511_QHF_FH_JSI11i_2	121.29	59.295			0.98817	1.0098	20.828	11	0	Median	1.1324	0.93238	7.9803	3	0	Plateau	0.91712	1.0996	12.048	2	0	Median	0.81699	0.82603	31.033	3	0	Median	0.98817	1.0868	14.962	3	0	Median	5487400000	2790000000	2697400000	947250000	396530000	550720000	847930000	415500000	432440000	1970500000	1050200000	920230000	1721800000	927710000	794060000	55624	2090	52393	337612;337613;337614;337615;337616;337617;337618;337619;337620;337621;337622	455297;455298;455299;455300;455301;455302;455303;455304;455305;455306;455307	455305			11	
VLVDQTTGLSR	0	Unmodified	1187.651	0.65100113	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	36.316	35.49	2	5.2214E-07	31904	160511_QHF_FH_JSI11i_1	114.84	56.165			0.97076	1.0137	7.2334	7	0	Median	1.1621	0.97241	2.3628	2	0	Median	0.8995	1.0896	10.222	2	0	Median	1.1435	1.1028	NaN	1	0	Median	0.96376	1.0358	5.9569	2	0	Median	2552200000	1247500000	1304600000	546250000	255000000	291240000	774580000	410550000	364030000	618970000	269680000	349280000	612380000	312310000	300060000	55625	2700	52394	337623;337624;337625;337626;337627;337628;337629	455308;455309;455310;455311;455312;455313;455314;455315;455316;455317;455318;455319;455320;455321	455309			14	
VLVDSSFGQPTTQGEAR	0	Unmodified	1790.8799	0.87989145	2297	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.475	47.794	2	8.0433E-23	42965	160511_QHF_FH_JSI10i_1	182.02	157.76			1.0489	1.0263	8.7973	4	0	Median	1.3298	1.0766	NaN	1	0	Median	0.82142	0.9784	NaN	1	0	Median	1.1861	1.1606	NaN	1	0	Median	0.92766	0.96088	NaN	1	0	Median	304010000	145840000	158170000	68651000	27311000	41340000	76753000	43669000	33085000	84163000	36124000	48038000	74439000	38736000	35704000	55626	2297	52395	337630;337631;337632;337633	455322;455323;455324;455325;455326;455327;455328	455326			7	
VLVDVER	0	Unmodified	828.47052	0.47051757	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	2	1	30.944	30.564	2	0.030114	27323	160511_QHF_FH_JSI12i_1	52.268	12.311			0.83087	0.93361	29.225	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7329	0.88401	NaN	1	0	Median	0.75537	0.7389	44.222	2	0	Median	0.94193	0.98599	NaN	1	0	Median	730640000	347420000	383210000	0	0	0	269790000	125300000	144490000	313930000	149410000	164520000	146920000	72716000	74209000	55627	910	52396	337634;337635;337636;337637	455329	455329			1	
VLVEATYNPNMPFK	1	Unmodified	1621.8174	0.81741453	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	3	6								1	4	3	1	70.634	69.983	2;3	1.8738E-22	61313	160511_QHF_FH_JSI11i_2	182.71	138.39			0.82368	0.91874	46.713	9	3	Median	0.31562	0.26513	NaN	1	0	Median	0.70846	0.84364	36.247	4	1	Median	0.95873	0.94256	7.0198	3	1	Median	0.82368	0.94415	NaN	1	1	Median	325200000	195740000	129460000	50111000	26640000	23471000	111660000	68409000	43250000	127870000	79722000	48150000	35558000	20971000	14587000	55628	3438	52397	337638;337639;337640;337641;337642;337643;337644;337645;337646	455330;455331;455332;455333;455334;455335;455336;455337;455338;455339;455340	455336			11	
VLVEDTK	1	Unmodified	802.44363	0.44363412	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	15.573	15.073	2	0.019071	12881	160511_QHF_FH_JSI12i_1	58.917	17.415			0.79486	0.81668	5.5966	5	0	Median	1.0213	0.85427	NaN	1	0	Median	0.64685	0.76918	3.8081	2	0	Median	0.83637	0.81668	NaN	1	0	Median	0.79486	0.85447	NaN	1	0	Median	1491800000	756020000	735760000	340980000	162060000	178920000	406860000	213920000	192940000	350480000	179790000	170690000	393450000	200250000	193200000	55629	5616	52398	337647;337648;337649;337650;337651	455341;455342	455341			2	
VLVEGPLNNLR	0	Unmodified	1222.7034	0.70337105	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	1	2	61.823	60.903	2	6.0271E-13	54178	160511_QHF_FH_JSI11i_3	145.16	113.78			1.0903	1.1549	17.183	7	0	Median	1.4354	1.1993	5.3284	2	0	Median	0.95042	1.1044	14.148	2	0	Median	1.2574	1.157	NaN	1	0	Median	0.84068	0.8797	20.867	2	0	Median	1141800000	564770000	577000000	140080000	56910000	83171000	184730000	109230000	75499000	360930000	164810000	196120000	456030000	233820000	222210000	55630	3904	52399	337652;337653;337654;337655;337656;337657;337658	455343;455344;455345;455346;455347;455348;455349;455350;455351;455352;455353;455354	455344			12	
VLVEPDAGAGVAVMK	1	Oxidation (M)	1470.7752	0.77521537	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	3.77	8					1				2	2	2	3	51.229	50.555	2;3	0.00040398	45919	160511_QHF_FH_JSI12i_1	82.489	56.551			0.85776	0.89045	9.4755	8	0	Median	1.0552	0.86556	17.628	2	0	Median	0.79155	0.93037	8.2973	2	0	Median	0.92386	0.86848	12.818	2	0	Median	0.84537	0.87819	4.0548	2	0	Median	439830000	214860000	224970000	96390000	39971000	56419000	112740000	66864000	45880000	114340000	55171000	59172000	116350000	52853000	63502000	55631	1525	52400	337659;337660;337661;337662;337663;337664;337665;337666;337667	455355;455356;455357;455358;455359;455360;455361;455362	455356		1203	8	
VLVEPDAGAGVAVMK	1	Unmodified	1454.7803	0.78030075	1525	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.76	0.73	7	7	3							5	3	4	5	62.698	61.894	2;3	1.2885E-09	56258	160511_QHF_FH_JSI11i_1	143.24	104.28			1.0351	1.0126	15.82	16	7	Median	1.2448	0.99332	18.161	5	2	Median	0.91741	1.1207	12.41	2	0	Median	1.1124	1.0866	19.758	4	2	Median	0.94751	1.0038	13.643	5	3	Median	3606400000	1656600000	1949800000	1324900000	580250000	744670000	333640000	173670000	159980000	1019600000	457060000	562580000	928180000	445610000	482570000	55632	1525	52400	337668;337669;337670;337671;337672;337673;337674;337675;337676;337677;337678;337679;337680;337681;337682;337683;337684	455363;455364;455365;455366;455367;455368;455369;455370;455371;455372;455373;455374;455375;455376;455377;455378;455379;455380;455381;455382;455383;455384;455385;455386	455365			24	
VLVEQQQDR	0	Unmodified	1113.5778	0.57783619	2968	Q5TDH0	DDI2	Protein DDI1 homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	14.245	13.699	2	0.0092309	11428	160511_QHF_FH_JSI12i_1	51.346	21.97			1.0768	1.094	24.403	3	1	Plateau	1.134	0.92607	NaN	1	0	Median	0.57562	0.67654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0768	1.094	NaN	1	0	Median	212280000	106700000	105580000	61512000	26645000	34866000	68408000	40366000	28042000	0	0	0	82361000	39693000	42668000	55633	2968	52401	337685;337686;337687	455387;455388;455389	455387			3	
VLVESYRK	1	Unmodified	992.56548	0.56548059	3038	Q6DKJ4	NXN	Nucleoredoxin	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		17.018	17.018	3	0.04637	14040	160511_QHF_FH_JSI11i_3	26.789	13.436			0.58231	0.56075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58231	0.56075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	170200000	92036000	78162000	0	0	0	0	0	0	170200000	92036000	78162000	0	0	0	55634	3038	52402	337688	455390	455390			1	
VLVHPPQDGEDEPTLVQK	1	Unmodified	2000.0215	0.021470309	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.46	5.24		4	6					3		1	2	5	5	52.915	49.583	2;3	4.7727E-18	42534	160511_QHF_FH_JSI12i_3	168.89	145.76			1.0768	1.1129	8.4452	11	1	Median	1.3394	1.1235	NaN	1	0	Median	0.85455	1.0369	5.0264	2	0	Median	1.1211	1.0822	6.4592	4	1	Median	1.1087	1.1628	11.509	4	0	Median	2204400000	1060700000	1143700000	219650000	89223000	130420000	257320000	125120000	132190000	864730000	421280000	443450000	862670000	425050000	437620000	55635	2759	52403	337689;337690;337691;337692;337693;337694;337695;337696;337697;337698;337699;337700;337701	455391;455392;455393;455394;455395;455396;455397;455398;455399;455400;455401;455402;455403;455404;455405;455406;455407;455408;455409;455410;455411;455412;455413;455414;455415;455416;455417;455418;455419	455414			29	
VLVIGATNRPDSLDPALR	0	Unmodified	1906.0636	0.063609895	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			67.511	66.022	3	0.014181	55315	160511_QHF_FH_JSI10i_3	41.202	23.713			0.82014	0.96534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.82014	0.96534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16103000	10649000	5453800	0	0	0	16103000	10649000	5453800	0	0	0	0	0	0	55636	285	52404	337702	455420	455420			1	
VLVIGELGVGK	1	Unmodified	1082.6699	0.66994566	2462	Q13637	RAB32	Ras-related protein Rab-32	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	71.771	70.875	2	0.032949	62055	160511_QHF_FH_JSI11i_2	54.416	25.69			0.9779	0.97623	9.5332	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94212	1.1557	NaN	1	0	Median	0.9779	0.97531	NaN	1	0	Median	1.0647	1.1447	NaN	1	0	Median	79635000	43129000	36507000	0	0	0	23574000	12187000	11387000	31568000	18191000	13377000	24493000	12751000	11743000	55637	2462	52405	337703;337704;337705	455421	455421			0	
VLVLGDSGVGK	1	Unmodified	1042.6023	0.60226003	2889	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		46.347	45.932	2	0.007987	41531	160511_QHF_FH_JSI11i_1	50.292	17.064			0.86738	0.93024	44.313	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0736	1.2726	NaN	1	1	Median	0.70076	0.68001	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	129650000	72751000	56900000	0	0	0	53144000	28927000	24217000	76507000	43823000	32683000	0	0	0	55638	2889	52406	337706;337707	455422;455423;455424	455423			3	
VLVLNQTGITWAEVLR	0	Unmodified	1811.0305	0.030518853	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	91.881	83.702	2	2.7342E-43	48623	160513_QHF_FH_JSI10Kac_6	232.6	183.86			1.1375	1.1858	14.869	3	2	Median	NaN	NaN	NaN	0	0	Median	0.97285	1.1157	NaN	1	1	Median	1.4895	1.48	NaN	1	0	Median	1.1375	1.1858	NaN	1	1	Median	154620000	72076000	82547000	0	0	0	84825000	46777000	38048000	34363000	15650000	18713000	35435000	9649600	25786000	55639	2712	52407	337708;337709;337710	455425;455426;455427	455427			3	
VLVLSQDYGK	1	Unmodified	1120.6128	0.61282471	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.61	4						2	1		1	2	2	2	50.797	45.824	2	8.8759E-05	41374	160511_QHF_FH_JSI10i_1	85.676	58.422			0.85949	0.87205	21.321	7	0	Median	1.0747	0.86388	NaN	1	0	Median	0.71294	0.84494	21.895	2	0	Median	1.1246	1.0886	31.365	2	0	Median	0.76108	0.8165	15.968	2	0	Median	274190000	132050000	142140000	41689000	19840000	21850000	80288000	38684000	41604000	86976000	37277000	49700000	65236000	36253000	28982000	55640	2162	52408	337711;337712;337713;337714;337715;337716;337717	455428;455429;455430;455431;455432;455433	455431			6	
VLVMANDPNYLHR	0	Unmodified	1540.782	0.78203208	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	0			By matching	By MS/MS	2.33	0.471		2	1									1	2	49.583	48.863	3	7.5294E-06	41949	160511_QHF_FH_JSI12i_2	95.417	90.339			1.3588	1.376	36.719	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3588	1.376	NaN	1	0	Median	1.482	1.5769	50.724	2	0	Median	286160000	115150000	171020000	0	0	0	0	0	0	127740000	55085000	72660000	158420000	60061000	98358000	55641	1346	52409	337718;337719;337720	455434;455435	455434			2	
VLVMLAAQSR	0	Oxidation (M)	1102.6169	0.61686423	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	49.667	40.121	2	0.00020299	21845	160513_QHF_FH_JSI11Kac_6	91.867	59.547			0.73004	0.78802	9.6424	5	1	Median	0.92021	0.7963	13.599	2	0	Median	0.70482	0.85942	NaN	1	0	Median	0.73004	0.70969	NaN	1	0	Median	0.71126	0.78802	NaN	1	1	Median	119500000	63475000	56028000	54994000	26707000	28287000	27118000	15261000	11857000	23286000	13372000	9913600	14105000	8135000	5970300	55642	3955	52410	337721;337722;337723;337724;337725	455436;455437;455438;455439;455440;455441;455442	455437		2364	7	
VLVMLAAQSR	0	Unmodified	1086.6219	0.62194961	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	61.504	51.758	2	0.0017703	28283	160513_QHF_FH_JSI10Kac_6	78.334	48.958			1.1846	1.0897	15.612	6	0	Median	1.2921	1.0988	12.627	2	0	Median	0.81104	0.9611	16.816	2	0	Median	1.1674	1.0969	NaN	1	0	Median	1.2462	1.3502	NaN	1	0	Median	369080000	185540000	183530000	67969000	31475000	36494000	200870000	104680000	96195000	77769000	36547000	41221000	22469000	12845000	9623600	55643	3955	52410	337726;337727;337728;337729;337730;337731	455443;455444;455445;455446;455447;455448	455448			6	
VLVNDAQK	1	Unmodified	885.49198	0.4919813	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.4	4	3	1			1	2			3	2	2	4	15.468	12.858	2	0.0012164	10774	160511_QHF_FH_JSI11i_1	92.47	33.489			1.1115	1.0577	20.434	10	0	Median	1.278	1.0532	7.2323	2	0	Median	0.8424	0.99781	1.6295	2	0	Median	1.1438	1.1306	0.18653	2	0	Median	0.92005	0.98985	33.314	4	0	Median	5658900000	2894300000	2764600000	1386100000	631430000	754680000	1572400000	884250000	688110000	1499200000	647320000	851920000	1201200000	731320000	469910000	55644	2380	52411	337732;337733;337734;337735;337736;337737;337738;337739;337740;337741;337742	455449;455450;455451;455452;455453;455454;455455;455456;455457;455458;455459;455460;455461;455462	455450			14	
VLVNTKPQEMGTEK	2	Unmodified	1572.8181	0.81814282	4691	Q9H3H1	TRIT1	tRNA dimethylallyltransferase, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		28.413	28.413	3	0.00096969	24522	160511_QHF_FH_JSI11i_3	67.275	28.641			1.5801	1.5029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5801	1.5029	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25145000	7732300	17413000	0	0	0	0	0	0	25145000	7732300	17413000	0	0	0	55645	4691	52412	337743	455463	455463			1	
VLVPATDR	0	Unmodified	869.49707	0.49706667	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.73	0.75	5	4	2							1	3	3	4	24.616	23.999	2	0.0033731	20800	160511_QHF_FH_JSI10i_2	73.039	31.537			0.92768	0.96392	9.2397	6	4	Median	1.1288	0.96166	NaN	1	1	Median	0.78271	0.96618	NaN	1	0	Median	0.95652	0.96128	14.992	2	2	Median	0.8454	0.90125	12.003	2	1	Median	2127100000	1162500000	964570000	371130000	196910000	174220000	353720000	186300000	167420000	869530000	465190000	404340000	532740000	314140000	218600000	55646	1909	52413	337744;337745;337746;337747;337748;337749;337750;337751;337752;337753;337754	455464;455465;455466;455467;455468;455469;455470;455471;455472;455473;455474;455475;455476	455474			13	
VLVPATDRNALSSLWGK	1	Unmodified	1826.005	0.0050323835	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			80.354	78.985	3	0.0086151	66245	160511_QHF_FH_JSI10i_3	42.947	25.03			1.0033	0.84065	NaN	1	0	Median	1.0033	0.84065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33814000	14776000	19039000	33814000	14776000	19039000	0	0	0	0	0	0	0	0	0	55647	1909	52414	337755;337756	455477;455478	455477			2	
VLVPEHEK	1	Unmodified	949.52328	0.52328142	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3.56	4.06		7	1					1		3	2	3	1	14.958	13.358	2;3	0.0099249	10694	160511_QHF_FH_JSI11i_2	39.022	28.608			0.80033	0.91552	16.014	9	1	Median	0.92255	0.77896	27.17	3	0	Median	0.77098	0.94817	3.5737	2	0	Median	0.8617	0.91552	8.2212	3	1	Plateau	0.72721	0.7824	NaN	1	0	Median	716880000	406990000	309890000	160690000	94476000	66216000	220970000	127380000	93591000	290170000	163370000	126800000	45054000	21768000	23286000	55648	1615	52415	337757;337758;337759;337760;337761;337762;337763;337764;337765	455479;455480;455481;455482;455483;455484;455485	455482			7	
VLVQNAAGSQEK	1	Unmodified	1242.6568	0.65681479	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.04	4	3				3	3			2	4	3	4	20.441	16.469	2	4.0887E-11	14268	160511_QHF_FH_JSI12i_1	179.42	147.1			0.95027	0.96106	14.355	13	1	Median	1.3284	1.0992	9.2296	2	0	Median	0.70395	0.81941	9.1767	4	0	Median	0.99268	0.97243	6.3279	3	0	Plateau	0.97048	1.0338	7.0398	4	1	Median	1904300000	1022600000	881700000	559060000	315650000	243410000	444980000	256990000	187990000	406480000	217370000	189110000	493800000	232620000	261190000	55649	5616	52416	337766;337767;337768;337769;337770;337771;337772;337773;337774;337775;337776;337777;337778	455486;455487;455488;455489;455490;455491;455492;455493;455494;455495;455496;455497;455498;455499;455500;455501;455502;455503;455504;455505;455506;455507	455489			22	
VLVQVSYAIGVSHPLSISIFHYGTSQK	1	Unmodified	2929.5702	0.57017862	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	87.512	79.401	3;4	4.5977E-99	43630	160513_QHF_FH_JSI9Kac_6	218.98	203.85			0.72355	0.79626	48.919	7	1	Median	0.72493	0.62619	0.89561	2	0	Median	0.70461	0.82351	4.7598	2	0	Median	1.8766	1.7765	15.499	2	1	Median	0.5465	0.57179	NaN	1	0	Median	1195300000	672120000	523180000	381780000	231540000	150250000	518400000	326650000	191760000	245830000	80194000	165630000	49290000	33744000	15546000	55650	1370	52417	337779;337780;337781;337782;337783;337784;337785	455508;455509;455510;455511;455512;455513;455514;455515;455516;455517	455511			10	
VLVSGLPPSGSWQDLK	1	Unmodified	1681.9039	0.90392136	2376	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		1	3	80.601	79.64	2	2.1398E-07	70113	160511_QHF_FH_JSI11i_2	131.43	94.908			1.1133	0.97024	14.687	5	3	Median	1.1133	0.97024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2014	1.2189	NaN	1	1	Median	0.83573	0.9	16.093	3	1	Plateau	73044000	34886000	38157000	12302000	4922200	7380200	0	0	0	20090000	8622000	11468000	40651000	21342000	19309000	55651	2376	52418	337786;337787;337788;337789;337790	455518;455519;455520;455521;455522	455522			5	
VLVSLSAGGRDEGNYLDDALVR	0	Unmodified	2318.1866	0.18663816	932	P09525	ANXA4	Annexin A4	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		80.297	79.623	3	1.902E-06	70907	160511_QHF_FH_JSI10i_2	70.99	57.953			1.3238	1.2089	22.388	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8252	0.98723	26.997	2	0	Median	1.3238	1.2089	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	161930000	87335000	74593000	0	0	0	91213000	48540000	42673000	70714000	38795000	31919000	0	0	0	55652	932	52419	337791;337792;337793	455523;455524;455525;455526	455526			4	
VLVSSGQVDTGQQQAR	0	Unmodified	1671.854	0.85401105	325	O43379	WDR62	WD repeat-containing protein 62	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	29.387	28.591	2	0.0001006	25628	160511_QHF_FH_JSI12i_1	74.46	60.302			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22714000	13435000	9278900	9278900	0	9278900	13435000	13435000	0	0	0	0	0	0	0	55653	325	52420	337794;337795;337796;337797;337798;337799	455527;455528;455529;455530;455531;455532	455530			6	
VLVTETQVIR	0	Unmodified	1156.6816	0.68157298	4228	Q96RT8	TUBGCP5	Gamma-tubulin complex component 5	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		32.38	32.141	2	0.058351	28750	160511_QHF_FH_JSI11i_1	41.429	12.053			3.7988	3.6735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7988	3.6735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	302350000	214250000	88100000	0	0	0	0	0	0	302350000	214250000	88100000	0	0	0	55654	4228	52421	337800	455533	455533			1	
VLVTGAAGQIAYSLLYSIGNGSVFGK	1	Unmodified	2584.3901	0.39008899	1503	P40925	MDH1	Malate dehydrogenase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	1.09				1					19	4	7	7	2	100.26	91.771	2;3	0	52280	160513_QHF_FH_JSI9Kac_6	483.19	459.71			0.96176	0.94092	23.863	12	4	Median	1.0481	0.91741	16.04	4	2	Median	0.75834	0.90153	7.6925	3	1	Median	1.2579	1.188	13.322	3	1	Median	0.58646	0.61927	21.233	2	0	Median	8458700000	4499600000	3959100000	3100300000	1602400000	1497900000	2254800000	1303100000	951690000	2170600000	1033500000	1137100000	932930000	560590000	372340000	55655	1503	52422	337801;337802;337803;337804;337805;337806;337807;337808;337809;337810;337811;337812;337813;337814;337815;337816;337817;337818;337819;337820	455534;455535;455536;455537;455538;455539;455540;455541;455542;455543;455544;455545;455546;455547;455548;455549;455550;455551;455552;455553;455554;455555;455556;455557	455544			24	
VLVTGATGLLGR	0	Unmodified	1155.6976	0.69755739	5160	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	65.965	62.448	2	9.8457E-05	52326	160511_QHF_FH_JSI10i_3	90.108	60.365			0.90564	0.94088	7.1493	12	0	Median	1.1828	1.009	4.8507	3	0	Median	0.85815	0.99919	9.2896	3	0	Median	0.94289	0.93422	5.5127	3	0	Median	0.88293	0.91995	7.6539	3	0	Median	2935900000	1424800000	1511100000	597920000	278960000	318960000	630170000	343420000	286760000	851300000	387900000	463400000	856540000	414510000	442030000	55656	5160	52423	337821;337822;337823;337824;337825;337826;337827;337828;337829;337830;337831;337832	455558;455559;455560;455561;455562;455563;455564;455565;455566;455567;455568;455569;455570;455571;455572	455563			15	
VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFR	0	Unmodified	3841.0203	0.020295102	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			99.127	91.689	4	1.5005E-116	54735	160513_QHF_FH_JSI10Kac_6	228.8	210.3			0.82031	0.96536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82031	0.96536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	375170000	121280000	253890000	130730000	0	130730000	244440000	121280000	123160000	0	0	0	0	0	0	55657	2533	52424	337833;337834	455573;455574	455574			2	
VLVTTNVCAR	0	Unmodified	1131.607	0.60702783	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0			By MS/MS		15	0								1				1		42.952	32.682	2	0.045601	18662	160513_QHF_FH_JSI11Kac_5	39.022	22.819			0.83782	0.82299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83782	0.82299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5053900	2177500	2876300	0	0	0	0	0	0	5053900	2177500	2876300	0	0	0	55658	5017;5423	52425	337835	455575	455575			1	
VLVTVEEDDTIMEELVDNHGK	1	Unmodified	2384.1417	0.14172138	4943	Q9NR45	NANS	Sialic acid synthase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	94.241	94.239	3	2.3063E-14	81636	160511_QHF_FH_JSI12i_3	121.44	112.84			2.0636	2.0009	9.0877	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.301	2.1338	NaN	1	1	Median	1.8506	1.8764	NaN	1	1	Median	49959000	16167000	33791000	0	0	0	0	0	0	15470000	3756300	11713000	34489000	12411000	22078000	55659	4943	52426	337836;337837	455576;455577	455577			2	
VLVTVIQGAVEYPDPIAQK	1	Unmodified	2039.1303	0.13029248	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	90.883	90.594	3	2.979E-08	82533	160511_QHF_FH_JSI12i_1	104.88	99.067			0.76152	0.88655	18.448	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.7287	0.86907	NaN	1	0	Median	1.2954	1.2509	NaN	1	1	Median	1.0912	1.0972	NaN	1	0	Median	101090000	52025000	49067000	0	0	0	44418000	25341000	19077000	28584000	11428000	17156000	28089000	15256000	12834000	55660	344	52427	337838;337839;337840	455578;455579;455580	455579			2	
VLVVGAGGIGCELLK	1	Unmodified	1483.8432	0.84323535	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.532	83.823	2	7.1131E-07	72465	160511_QHF_FH_JSI12i_2	131.43	109.35			1.0641	0.98935	28.782	4	2	Median	1.1218	0.98176	NaN	1	0	Median	0.75358	0.92187	NaN	1	0	Median	1.0093	0.997	NaN	1	1	Median	1.5953	1.7115	NaN	1	1	Median	132610000	72680000	59933000	13414000	8142500	5271400	32042000	19310000	12732000	46865000	27094000	19771000	40292000	18133000	22159000	55661	5254	52428	337841;337842;337843;337844	455581;455582;455583;455584;455585;455586;455587	455581			7	
VLVVHDGFEGLAK	1	Unmodified	1382.7558	0.75580056	897	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.79		8	5						4	5	3	3	6	59.08	56.086	2;3	2.2902E-11	49519	160511_QHF_FH_JSI11i_3	152.47	139.85			1.0184	1.1135	20.934	15	6	Median	1.3066	1.1275	5.2093	3	1	Median	1.0184	1.2404	5.1146	3	1	Median	1.1193	1.0254	6.5285	3	1	Plateau	0.81186	0.91173	25.66	6	3	Median	2439000000	1173800000	1265300000	334850000	161820000	173030000	512410000	269400000	243010000	883220000	429720000	453500000	708570000	312850000	395720000	55662	897	52429	337845;337846;337847;337848;337849;337850;337851;337852;337853;337854;337855;337856;337857;337858;337859;337860;337861	455588;455589;455590;455591;455592;455593;455594;455595;455596;455597;455598;455599;455600;455601;455602;455603;455604;455605;455606;455607;455608;455609	455588			22	
VLVVSAK	1	Unmodified	714.46398	0.46397563	4695	Q9H3K6	BOLA2	BolA-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6.74	3	4					2	3	2	2	5	4	3	27.188	22.337	2	0.017401	19961	160511_QHF_FH_JSI12i_1	62.717	25.072			0.95678	1.0081	18.849	14	1	Median	1.0712	0.92604	1.3045	2	0	Median	0.80735	0.96588	5.5082	5	0	Median	1.2111	1.2175	14.71	4	0	Median	0.91344	1.0287	32.543	3	1	Median	2584900000	1271900000	1313000000	378240000	165670000	212570000	712250000	366560000	345690000	842070000	397040000	445030000	652350000	342650000	309710000	55663	4695	52430	337862;337863;337864;337865;337866;337867;337868;337869;337870;337871;337872;337873;337874;337875	455610;455611;455612;455613;455614;455615;455616;455617;455618;455619;455620	455613			11	
VLVWDLR	0	Unmodified	899.52289	0.52288749	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	6.02		8	1						3	3	3	3	3	71.719	67.667	2	0.00050644	59736	160511_QHF_FH_JSI11i_2	114.19	47.151			1.04	1.0672	9.4746	8	4	Median	1.1886	1.0157	4.9103	2	1	Median	0.85192	1.0192	22.333	2	1	Median	1.1172	1.105	1.1813	2	1	Median	0.9739	1.0575	3.3743	2	1	Median	1433800000	705680000	728130000	261780000	114870000	146900000	286670000	166140000	120530000	548080000	259540000	288540000	337290000	165130000	172150000	55664	359	52431	337876;337877;337878;337879;337880;337881;337882;337883;337884;337885;337886;337887	455621;455622;455623;455624;455625;455626;455627;455628;455629;455630;455631;455632;455633;455634	455628			14	
VLVYELLLGK	1	Unmodified	1145.706	0.70599682	4188	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	5.5	6.06		3							1		1	1	2	97.955	95.488	2	0.0061239	43946	160513_QHF_FH_JSI12Kac_6	60.892	48.265			0.83853	0.86821	24.861	4	0	Median	NaN	NaN	NaN	0	0	Median	1.149	1.4169	NaN	1	0	Median	0.86333	0.87286	NaN	1	0	Median	0.78378	0.85692	1.0948	2	0	Median	70738000	34418000	36320000	0	0	0	9506000	4313800	5192100	18948000	9794000	9153600	42285000	20311000	21974000	55665	4188	52432	337888;337889;337890;337891	455635;455636;455637	455637			3	
VLVYNNTSIVQDEILAHR	0	Unmodified	2083.1062	0.10620299	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	2	1	1	76.4	73.123	3	2.043E-33	38950	160513_QHF_FH_JSI10Kac_6	165.9	156.48			1.0429	0.99459	28.276	5	1	Median	0.688	0.59526	NaN	1	1	Median	0.88803	1.0316	27.543	2	0	Median	1.0429	0.99459	NaN	1	0	Median	1.0446	1.0677	NaN	1	0	Median	867320000	437380000	429940000	46178000	32368000	13810000	111270000	60311000	50962000	419020000	195630000	223400000	290840000	149070000	141770000	55666	260	52433	337892;337893;337894;337895;337896	455638;455639;455640;455641;455642;455643	455643			6	
VLWLSGLSEPGAAR	0	Unmodified	1454.7882	0.78816332	4738	Q9H5X1	FAM96A	MIP18 family protein FAM96A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	1	2	1	80.16	79.583	2	0.00010303	71023	160511_QHF_FH_JSI11i_3	108.7	90.429			0.76096	0.75409	27.205	5	4	Median	0.93201	0.79783	NaN	1	1	Median	1.0437	1.2192	NaN	1	1	Median	0.74651	0.71656	7.2181	2	1	Median	0.58051	0.5915	NaN	1	1	Median	163120000	98194000	64927000	20551000	12359000	8191400	25030000	11557000	13473000	71133000	44294000	26839000	46407000	29984000	16423000	55667	4738	52434	337897;337898;337899;337900;337901	455644;455645;455646;455647;455648	455644			5	
VLWWYYFSK	1	Unmodified	1290.6437	0.64373091	5132	Q9NYP7;Q9NXB9	ELOVL5;ELOVL2	Elongation of very long chain fatty acids protein 5;Elongation of very long chain fatty acids protein 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.538	83.212	2	0.00012357	46157	160513_QHF_FH_JSI9Kac_6	109.21	58.336			0.95889	0.96954	20.081	4	1	Median	1.0058	0.8504	NaN	1	0	Median	0.80383	0.95736	NaN	1	0	Median	1.4491	1.3592	NaN	1	1	Median	0.91415	0.98188	NaN	1	0	Median	667060000	355930000	311140000	162760000	84454000	78306000	209140000	130520000	78617000	202080000	85292000	116780000	93086000	55658000	37428000	55668	5132	52435	337902;337903;337904;337905	455649;455650;455651;455652;455653	455650			5	
VLWYNTVLNK	1	Unmodified	1248.6867	0.68665836	4455	Q9BV10	ALG12	Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	72.07	71.366	2	2.3466E-05	59861	160511_QHF_FH_JSI10i_3	107.47	76.895			0.7065	0.78797	21.786	5	4	Median	1.2385	1.0355	NaN	1	0	Median	0.7065	0.82892	NaN	1	1	Median	0.69721	0.63878	NaN	1	1	Median	0.68412	0.68804	19.179	2	2	Median	272110000	158590000	113520000	33609000	12709000	20899000	26967000	12676000	14292000	69790000	43031000	26759000	141740000	90172000	51573000	55669	4455	52436	337906;337907;337908;337909;337910	455654;455655;455656;455657;455658;455659;455660	455655			7	
VLYAPWLLK	1	Unmodified	1101.6587	0.65865269	4056	Q96ES6	MFSD3	Major facilitator superfamily domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	88.686	88.1	2	0.059279	73753	160511_QHF_FH_JSI10i_3	33.797	30.225			1.1973	1.2249	16.865	4	0	Median	1.5691	1.3447	NaN	1	0	Median	1.1899	1.4191	NaN	1	0	Median	1.2047	1.1158	NaN	1	0	Median	0.96143	0.985	NaN	1	0	Median	44754000	19808000	24947000	7150300	2635600	4514700	8245700	4061600	4184100	13782000	6168900	7612600	15577000	6941600	8635300	55670	4056	52437	337911;337912;337913;337914	455661	455661			1	
VLYAVFSR	0	Unmodified	953.53345	0.53345218	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	4.78			1					1	4	2	1	1	2	62.255	54.294	2	1.0169E-10	29855	160513_QHF_FH_JSI10Kac_6	154.01	91.296			1.0888	1.0977	17.644	6	1	Median	1.398	1.1917	37.341	2	0	Median	0.8586	1.0264	NaN	1	0	Median	1.1893	1.1116	NaN	1	0	Median	1.0541	1.0977	0.73869	2	1	Median	1248300000	562680000	685610000	228140000	106130000	122020000	678890000	293660000	385220000	188440000	81975000	106460000	152830000	80920000	71909000	55671	236	52438	337915;337916;337917;337918;337919;337920	455662;455663;455664;455665;455666;455667;455668	455668			7	
VLYAYGYYTGEPSK	1	Unmodified	1609.7664	0.76642482	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.26	4	4				1	2	8	9	6	9	7	6	62.353	55.406	2;3	4.9726E-30	30382	160513_QHF_FH_JSI10Kac_6	162.38	153.06			0.94015	0.94651	13.242	24	2	Median	1.0986	0.91071	8.5055	6	0	Median	0.77368	0.92829	20.117	7	1	Median	1.0545	1.0457	11.008	6	1	Median	0.83171	0.92421	3.2266	5	0	Median	1424700000	713830000	710890000	374180000	157680000	216500000	420220000	241870000	178350000	412730000	203740000	208990000	217600000	110540000	107060000	55672	214	52439	337921;337922;337923;337924;337925;337926;337927;337928;337929;337930;337931;337932;337933;337934;337935;337936;337937;337938;337939;337940;337941;337942;337943;337944;337945;337946;337947;337948	455669;455670;455671;455672;455673;455674;455675;455676;455677;455678;455679;455680;455681;455682;455683;455684;455685;455686;455687;455688;455689;455690;455691;455692;455693;455694;455695;455696;455697;455698;455699;455700;455701;455702;455703;455704;455705;455706;455707;455708;455709;455710;455711;455712;455713;455714;455715;455716;455717;455718;455719;455720;455721;455722	455720			54	
VLYAYGYYTGEPSKR	1	Unmodified	1765.8675	0.86753585	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.01			2						9	1	3	4	3	52.893	46.408	2;3	1.6074E-09	24154	160513_QHF_FH_JSI12Kac_6	114.83	80.967			1.2776	1.1644	67.876	6	1	Median	1.7336	1.5149	NaN	1	0	Median	1.3189	1.5586	108.08	2	1	Median	1.72	1.6414	85.781	2	0	Median	0.75931	0.79508	NaN	1	0	Median	1892700000	794010000	1098700000	310620000	108680000	201940000	802100000	386830000	415270000	670880000	244950000	425920000	109070000	53551000	55519000	55673	214	52440	337949;337950;337951;337952;337953;337954;337955;337956;337957;337958;337959	455723;455724;455725;455726;455727;455728;455729;455730;455731;455732;455733;455734;455735;455736	455731			14	
VLYDFVMDDTISPYSR	0	Unmodified	1919.8975	0.89751535	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	91.184	90.631	2	9.0707E-08	79558	160511_QHF_FH_JSI11i_2	137.59	127.26			1.0321	1.1458	7.7411	4	1	Median	1.4154	1.1983	NaN	1	0	Median	0.93882	1.1594	NaN	1	0	Median	1.0028	1.0034	NaN	1	1	Median	1.0622	1.1323	NaN	1	0	Median	130150000	58753000	71399000	29205000	11800000	17405000	29243000	14866000	14377000	45560000	19419000	26141000	26144000	12668000	13476000	55674	251	52441	337960;337961;337962;337963;337964	455737;455738;455739;455740;455741;455742;455743	455741			7	
VLYHFLSSQQLENIWWQR	0	Unmodified	2346.1909	0.19093567	3093	Q6P1M3	LLGL2	Lethal(2) giant larvae protein homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.621	80.337	3	1.2034E-18	46235	160513_QHF_FH_JSI10Kac_6	146.76	133.72			1.317	1.1944	22.684	4	2	Median	1.2084	1.0225	NaN	1	0	Median	0.84898	1.0245	NaN	1	0	Median	1.4354	1.3925	NaN	1	1	Median	1.4947	1.6072	NaN	1	1	Median	669500000	294410000	375080000	142500000	64820000	77681000	285240000	143490000	141750000	100520000	39922000	60599000	141240000	46181000	95055000	55675	3093	52442	337965;337966;337967;337968	455744;455745;455746;455747	455747			4	
VLYLPSFFTYAK	1	Unmodified	1447.7751	0.77513901	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.7		4	3						5	3	3	3	3	97.875	94.247	2	5.7326E-23	82256	160511_QHF_FH_JSI9i_3	178.22	149.82			0.99324	0.98281	15.981	12	3	Median	1.0009	0.84943	13.044	3	0	Plateau	0.87632	1.0859	13.505	3	0	Median	0.99024	0.97315	14.122	3	3	Median	0.83983	0.90221	23.428	3	0	Median	1672900000	833840000	839020000	297180000	133220000	163960000	526180000	263520000	262660000	388470000	196580000	191900000	461030000	240530000	220500000	55676	5158	52443	337969;337970;337971;337972;337973;337974;337975;337976;337977;337978;337979;337980	455748;455749;455750;455751;455752;455753;455754;455755;455756;455757;455758;455759;455760;455761	455753			13	
VLYLVQGEK	1	Unmodified	1047.5964	0.59644637	5348	Q9UJW0	DCTN4	Dynactin subunit 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.314	44.821	2	0.047412	38509	160511_QHF_FH_JSI11i_2	44.753	27.367			0.44621	0.43797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44621	0.43797	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55465000	30975000	24490000	0	0	0	0	0	0	55465000	30975000	24490000	0	0	0	55677	5348	52444	337981	455762	455762			1	
VLYNLFTK	1	Unmodified	996.56442	0.56441796	5028	Q9NVD7;Q9HBI1	PARVA;PARVB	Alpha-parvin;Beta-parvin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	65.553	64.559	2	0.0030848	53981	160511_QHF_FH_JSI10i_3	75.213	54.658			0.92862	0.99228	19.951	6	2	Median	1.4198	1.1504	NaN	1	1	Median	0.91572	1.0871	37.773	2	0	Median	0.83815	0.85422	NaN	1	1	Median	0.92862	0.99228	2.8519	2	0	Median	993770000	548040000	445740000	86152000	41944000	44208000	253220000	143310000	109920000	220900000	131800000	89105000	433490000	230990000	202510000	55678	5028	52445	337982;337983;337984;337985;337986;337987	455763;455764;455765;455766;455767;455768	455765			6	
VLYNLIMGLLPLPR	0	Unmodified	1610.9582	0.95820553	4515	Q9BXH1	BBC3	Bcl-2-binding component 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		98.856	89.58	2	1.0024E-10	51577	160513_QHF_FH_JSI9Kac_6	121.83	82.808			0.77551	0.71866	92.171	2	0	Median	0.43708	0.37452	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.376	1.379	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70449000	35398000	35051000	33629000	20909000	12720000	0	0	0	36820000	14489000	22331000	0	0	0	55679	4515	52446	337988;337989	455769;455770	455770			1	
VLYPNDNFFEGK	1	Unmodified	1441.6878	0.68778057	855;992	P06737;P11217;P11216	PYGL;PYGM;PYGB	Glycogen phosphorylase, liver form;Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form	no	no	0	0	0	0	By MS/MS				1	0	1									1				67.694	66.7	2	0.0087435	59292	160511_QHF_FH_JSI9i_1	48.741	32.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55680	855;992	52447	337990	455771	455771			1	
VLYQYKEK	2	Acetyl (K)	1111.5914	0.59136099	686	O95373	IPO7	Importin-7	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	40.207	30.401	2	0.02103	18094	160513_QHF_FH_JSI12Kac_4	61.582	16.621			0.43012	0.46301	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43012	0.46301	NaN	1	0	Median	15417000	10149000	5268100	0	0	0	0	0	0	0	0	0	15417000	10149000	5268100	55681	686	52448	337991	455772;455773	455773	346		2	
VLYSLYGVVEHSGTMR	0	Oxidation (M)	1825.9033	0.90326943	5680	Q9Y5T5	USP16	Ubiquitin carboxyl-terminal hydrolase 16	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			69.716	62.04	3	0.011995	32983	160513_QHF_FH_JSI9Kac_6	43.208	31.44			0.85898	1.0388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85898	1.0388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21610000	13365000	8244900	0	0	0	21610000	13365000	8244900	0	0	0	0	0	0	55682	5680	52449	337992;337993	455774;455775	455774		2731	2	
VLYSNMLGEENTYLWR	0	Unmodified	1986.9509	0.9509479	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.23	2	11	4						1	3	3	7	5	89.379	88.426	2;3	7.0198E-137	79286	160511_QHF_FH_JSI10i_2	347.7	347.7			1.1073	1.0963	36.314	16	4	Median	1.2394	1.0485	6.3597	2	0	Median	0.876	1.09	7.4877	3	1	Plateau	1.3641	1.2548	49.456	7	3	Median	0.92197	1.0035	16.828	4	0	Median	2431300000	1208700000	1222700000	313970000	154580000	159390000	473180000	256390000	216780000	1055000000	481020000	573990000	589180000	316670000	272510000	55683	2146	52450	337994;337995;337996;337997;337998;337999;338000;338001;338002;338003;338004;338005;338006;338007;338008;338009;338010;338011	455776;455777;455778;455779;455780;455781;455782;455783;455784;455785;455786;455787;455788;455789;455790;455791;455792;455793;455794;455795;455796;455797;455798;455799;455800;455801;455802;455803;455804;455805;455806	455799			31	
VLYSNMLGEENTYLWR	0	Oxidation (M)	2002.9459	0.94586252	2146	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	77.031	76.194	2	3.9762E-07	67710	160511_QHF_FH_JSI10i_2	136.27	119.89			0.96403	1.2199	19.321	4	1	Linear	0.95259	0.83655	NaN	1	1	Median	0.97561	1.194	NaN	1	0	Median	1.2713	1.2614	NaN	1	0	Median	0.84881	0.94886	NaN	1	0	Median	118290000	65785000	52502000	12631000	7955100	4676200	32913000	16961000	15952000	43640000	26551000	17089000	29103000	14318000	14785000	55684	2146	52450	338012;338013;338014;338015;338016	455807;455808;455809;455810;455811;455812;455813	455813		1792	7	
VLYTCFQSIQAQK	1	Unmodified	1584.797	0.79701344	1588	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	5.66			2					1			1	1	1	61.879	58.239	2	0.00017602	50084	160511_QHF_FH_JSI12i_3	105.86	88.838			0.81745	0.89604	32.289	3	3	Median	NaN	NaN	NaN	0	0	Median	0.81745	0.89604	NaN	1	1	Median	0.57125	0.53955	NaN	1	1	Median	0.97392	0.9829	NaN	1	1	Median	53718000	27451000	26267000	0	0	0	1084500	786640	297830	19396000	11468000	7927500	33238000	15196000	18042000	55685	1588	52451	338017;338018;338019	455814;455815;455816	455816			3	
VLYVQDSLEGEAR	0	Unmodified	1477.7413	0.7412727	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	1	3	53.134	52.286	2	5.5223E-05	47291	160511_QHF_FH_JSI11i_1	109.42	94.729			0.87049	0.90224	20.236	6	1	Plateau	0.98128	0.83475	5.9926	2	0	Median	0.84321	1.0035	NaN	1	0	Median	0.89866	0.88198	NaN	1	0	Median	0.6504	0.69075	30.944	2	1	Median	548340000	288490000	259850000	104500000	57889000	46614000	181160000	101380000	79773000	121180000	55395000	65781000	141510000	73826000	67680000	55686	1615	52452	338020;338021;338022;338023;338024;338025;338026	455817;455818;455819;455820;455821;455822;455823;455824;455825;455826;455827	455817			11	
VLYYSATK	1	Unmodified	943.50148	0.50148335	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	27.689	26.905	2	0.018546	22536	160511_QHF_FH_JSI11i_2	47.574	47.574			0.87517	0.87875	20.693	5	0	Median	1.0325	0.87875	NaN	1	0	Median	0.77211	0.91702	39.223	2	0	Median	0.8015	0.81529	NaN	1	0	Median	0.87517	0.97489	NaN	1	0	Median	472100000	265820000	206280000	83125000	37970000	45155000	164510000	108390000	56118000	125450000	63455000	61991000	99025000	56004000	43021000	55687	1273	52453	338027;338028;338029;338030;338031	455828;455829	455829			2	
VLYYTGR	0	Unmodified	870.45995	0.45995289	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				11.512	10.801	3	0.0494	8349	160511_QHF_FH_JSI9i_3	17.909	5.4775			0.66058	0.54341	NaN	1	0	Median	0.66058	0.54341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	136440000	69768000	66676000	136440000	69768000	66676000	0	0	0	0	0	0	0	0	0	55688	4221	52454	338032	455830	455830			1	
VMAAAQAAHADDFIQEMEHGIYTDVGEK	1	Unmodified	3046.3801	0.38007094	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			97.221	97.037	4	0.021764	85838	160511_QHF_FH_JSI10i_2	22.399	19.719			0.88618	1.083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88618	1.083	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32344000	17804000	14539000	0	0	0	32344000	17804000	14539000	0	0	0	0	0	0	55689	2212	52455	338033	455831;455832	455831			2	
VMAAENIPENPLK	1	Unmodified	1424.7334	0.73335055	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	1	2	57.842	57.177	2	9.448E-08	50715	160511_QHF_FH_JSI9i_1	140.07	120.31			1.4002	1.2822	15.305	7	5	Median	1.7018	1.4234	15.443	2	1	Median	1.0695	1.2299	5.8788	2	2	Median	1.5388	1.5084	NaN	1	0	Median	1.1864	1.2026	23.877	2	2	Median	677440000	327730000	349710000	129050000	44566000	84486000	217070000	119230000	97838000	100430000	45055000	55376000	230890000	118880000	112010000	55690	1528	52456	338034;338035;338036;338037;338038;338039;338040	455833;455834;455835;455836;455837;455838;455839;455840;455841	455839			9	
VMAEANHFIDLSQIPCNGK	1	Unmodified	2143.019	0.019044243	274	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		71.553	70.935	3	0.0095526	62159	160511_QHF_FH_JSI11i_2	37.552	28.951			1.0299	1.0197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0299	1.0197	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26280000	17996000	8284000	0	0	0	0	0	0	26280000	17996000	8284000	0	0	0	55691	274	52457	338041	455842	455842			1	
VMAGALEGDLFIGPK	1	Unmodified	1516.796	0.79595081	1524	P42025	ACTR1B	Beta-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.91	0.287	1	10								2	4	2	3	83.031	82.317	2;3	3.0646E-15	71998	160511_QHF_FH_JSI11i_2	166.93	0			0.99412	1.0039	20.674	11	0	Median	1.1908	1.0262	5.8448	2	0	Median	0.88999	1.0891	27.021	4	0	Median	1.0774	1.1074	30.864	2	0	Median	0.90054	1.0039	19.63	3	0	Median	578500000	312570000	265930000	117690000	58692000	58999000	167820000	95551000	72271000	121150000	55823000	65329000	171830000	102500000	69330000	55692	1524	52458	338042;338043;338044;338045;338046;338047;338048;338049;338050;338051;338052	455843;455844;455845;455846;455847;455848;455849;455850;455851;455852;455853;455854;455855;455856;455857;455858;455859	455855			16	
VMAGSLLLDK	1	Unmodified	1045.5842	0.58416712	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	59.497	58.432	2	0.014513	51647	160511_QHF_FH_JSI10i_2	52.549	32.029			0.61547	0.72704	16.561	3	3	Plateau	0.65422	0.55933	NaN	1	1	Median	0.61547	0.76484	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53839	0.59539	NaN	1	1	Median	280100000	169780000	110320000	80580000	45899000	34682000	98775000	60158000	38617000	0	0	0	100750000	63728000	37017000	55693	3229	52459	338053;338054;338055	455860;455861;455862	455862			3	
VMALELGPHK	1	Unmodified	1093.5954	0.59540051	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	43.527	42.72	3	2.177E-06	36501	160511_QHF_FH_JSI11i_2	91.584	82.721			1.1138	1.179	30.619	7	3	Median	1.4079	1.1886	NaN	1	0	Median	1.2759	1.5102	35.008	2	1	Median	0.95505	0.92947	16.397	2	1	Median	0.91558	0.96814	34.472	2	1	Median	596880000	300520000	296350000	67252000	23451000	43801000	142290000	77200000	65095000	217550000	121720000	95823000	169780000	78146000	91636000	55694	3278	52460	338056;338057;338058;338059;338060;338061;338062;338063	455863;455864;455865;455866;455867;455868;455869;455870	455868			8	
VMALWHQLHVNTK	1	Unmodified	1575.8344	0.834402	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	64.091	54.784	4	1.1472E-06	29685	160513_QHF_FH_JSI10Kac_6	102.73	96.29			0.85649	0.9611	112.44	5	2	Median	0.3619	0.31037	NaN	1	1	Median	0.85649	1.006	NaN	1	0	Median	2.4657	2.3999	129.42	2	1	Median	0.45278	0.49926	NaN	1	0	Median	154980000	71145000	83835000	7588900	6082700	1506100	103550000	50897000	52656000	34303000	8088900	26214000	9534600	6076000	3458600	55695	5458	52461	338064;338065;338066;338067;338068	455871;455872;455873;455874;455875;455876	455876			6	
VMASMFYEVSTR	0	Unmodified	1419.6527	0.65265739	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		16	0									3	1	1	1		73.117	64.648	2	1.002E-12	35672	160513_QHF_FH_JSI10Kac_6	130.98	121.65			0.81607	0.89678	11.654	3	0	Plateau	0.88715	0.75475	NaN	1	0	Median	0.81607	0.9424	NaN	1	0	Median	0.90854	0.89678	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	111460000	61846000	49615000	26248000	14725000	11522000	60619000	33774000	26846000	24594000	13346000	11247000	0	0	0	55696	1296	52462	338069;338070;338071	455877;455878;455879	455879			3	
VMATTGGTNLRDDIMR	0	Unmodified	1749.8502	0.850188	1271	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	3	2	1	48.171	47.377	2;3	0.00011154	41747	160511_QHF_FH_JSI10i_2	72.898	58.868			1.0826	0.98655	23.486	8	1	Median	1.2307	1.0313	6.0825	2	0	Median	0.8295	0.93595	23.309	3	0	Median	1.1786	1.1475	21.566	2	0	Median	0.63828	0.65277	NaN	1	1	Median	1508500000	780400000	728060000	436790000	198000000	238790000	766400000	433540000	332860000	237530000	109290000	128250000	67732000	39570000	28162000	55697	1271	52463	338072;338073;338074;338075;338076;338077;338078;338079	455880;455881;455882;455883;455884;455885;455886;455887;455888;455889;455890;455891;455892	455891			13	
VMAYFVENFWGEK	1	Unmodified	1618.749	0.74900062	2287	Q0JRZ9	FCHO2	F-BAR domain only protein 2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		97.648	97.648	2	0.00026213	86974	160511_QHF_FH_JSI11i_3	72.006	57.587			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55698	2287	52464	338080	455893	455893			1	
VMDAVMSDGNLETR	0	Unmodified	1536.6912	0.69122774	3374	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.02	46.609	2	0.001191	42206	160511_QHF_FH_JSI11i_1	78.908	55.303			0.67658	0.65756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67658	0.65756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17405000	10905000	6499700	0	0	0	0	0	0	17405000	10905000	6499700	0	0	0	55699	3374	52465	338081	455894	455894			1	
VMDDLDR	0	Unmodified	862.38547	0.38546731	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.728	17.243	2	0.04193	14565	160511_QHF_FH_JSI11i_1	46.426	22.454			0.82279	0.92204	17.47	4	0	Median	1.2778	1.0403	NaN	1	0	Median	0.804	0.97083	NaN	1	0	Median	0.72377	0.6974	NaN	1	0	Median	0.842	0.87571	NaN	1	0	Median	2413300000	1167200000	1246100000	665430000	270060000	395370000	621080000	346130000	274950000	568560000	301900000	266650000	558280000	249110000	309170000	55700	1664	52466	338082;338083;338084;338085	455895	455895			1	
VMDEVEK	1	Unmodified	848.39497	0.39496937	5562	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.827	12.566	2	0.034446	10161	160511_QHF_FH_JSI11i_1	50.127	29.572			0.9778	1.024	9.6395	3	0	Median	NaN	NaN	NaN	0	0	Median	0.9778	1.1736	NaN	1	0	Median	1.0612	1.024	NaN	1	0	Median	0.93285	0.97428	NaN	1	0	Median	1737300000	909120000	828210000	0	0	0	597090000	325800000	271290000	561150000	268520000	292630000	579100000	314800000	264290000	55701	5562	52467	338086;338087;338088	455896;455897;455898;455899;455900	455897			5	
VMDIPYLNLEGPDLQPK	1	Unmodified	1940.9918	0.99175008	695	O95453	PARN	Poly(A)-specific ribonuclease PARN	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1	0	3									1	1		1	100.72	100.6	3	7.9092E-05	88840	160511_QHF_FH_JSI9i_1	67.646	57.161			1.2223	1.234	33.411	3	1	Median	1.5884	1.2756	NaN	1	0	Median	0.61944	0.7039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2223	1.234	NaN	1	0	Median	63905000	28754000	35151000	12110000	4613000	7497400	24679000	12749000	11930000	0	0	0	27116000	11392000	15724000	55702	695	52468	338089;338090;338091	455901;455902	455902			2	
VMDQHKLTR	1	Acetyl (K)	1168.6023	0.6022768	1073	P15311	EZR	Ezrin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.281	16.178	3	0.0012557	10004	160513_QHF_FH_JSI11Kac_6	68.132	60.565			0.25455	0.25011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25455	0.25011	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19970000	15814000	4155600	0	0	0	0	0	0	19970000	15814000	4155600	0	0	0	55703	1073	52469	338092	455903;455904	455904	918		2	
VMDQKEHK	2	Acetyl (K)	1055.507	0.50697943	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.4	0.49							3	2			2	3		8.2728	-0.54292	2;3	0.010699	3240	160513_QHF_FH_JSI11Kac_4	46.457	36.226			0.33585	0.32772	86.814	5	0	Median	NaN	NaN	NaN	0	0	Median	1.2558	1.4653	5.2852	2	0	Median	0.28109	0.27432	11.481	3	0	Plateau	NaN	NaN	NaN	0	0	Median	84401000	57152000	27249000	0	0	0	14192000	5655300	8536500	70209000	51496000	18712000	0	0	0	55704	2488	52470	338093;338094;338095;338096;338097	455905;455906;455907	455906	2499		3	
VMDQKEHK	2	Acetyl (K);Oxidation (M)	1071.5019	0.50189405	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	1	0	1	1			By MS/MS		14	0							2					2		5.4284	-2.1711	2;3	0.019914	1803	160513_QHF_FH_JSI11Kac_4	51.346	34.57			0.278	0.27288	12.625	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.278	0.27288	12.625	2	0	Median	NaN	NaN	NaN	0	0	Median	20127000	14830000	5296700	0	0	0	0	0	0	20127000	14830000	5296700	0	0	0	55705	2488	52470	338098;338099	455908;455909	455908	2499	1972	1	
VMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFK	1	Unmodified	4058.0612	0.061173639	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	13.4	5.2			1						4	1	2	1	1	94.899	88.188	5	1.0862E-116	45527	160513_QHF_FH_JSI12Kac_6	225.18	216.84			0.81098	0.86281	21.906	5	0	Median	0.81098	0.68025	NaN	1	0	Median	0.71599	0.83815	7.8332	2	0	Median	0.91492	0.86281	NaN	1	0	Median	1.176	1.2346	NaN	1	0	Median	914670000	485020000	429650000	173560000	85135000	88420000	398510000	229460000	169050000	217170000	110230000	106940000	125430000	60203000	65230000	55706	1659	52471	338100;338101;338102;338103;338104	455910;455911;455912;455913;455914;455915	455913			6	
VMDSDEDDDY	0	Unmodified	1202.3921	0.39212841	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7.67	4.71	1			2							2	1		31.182	22.892	2	0.0063481	22041	160511_QHF_FH_JSI10i_1	54.611	54.611			0.95617	0.91667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95617	0.91667	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1262200	769900	492350	0	0	0	0	0	0	1262200	769900	492350	0	0	0	55707	196	52472	338105;338106;338107	455916;455917;455918	455916			3	
VMDVTEDEEEEIK	1	Unmodified	1564.6814	0.68143414	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			44.646	44.223	2	4.5407E-06	39171	160511_QHF_FH_JSI9i_1	87.363	77.676			0.27721	0.32952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.27721	0.32952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74787000	49306000	25481000	0	0	0	74787000	49306000	25481000	0	0	0	0	0	0	55708	733;3526	52473	338108;338109	455919;455920	455920			2	
VMDYHFTTAEASTQDPR	0	Unmodified	1967.8683	0.86834049	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	45.184	44.209	3	4.5615E-05	37886	160511_QHF_FH_JSI12i_2	71.685	57.702			1.0408	1.0646	8.7227	4	0	Median	1.259	1.0836	NaN	1	0	Median	0.77401	0.96064	NaN	1	0	Median	1.0293	1.0459	NaN	1	0	Median	1.0524	1.1859	NaN	1	0	Median	256140000	123670000	132470000	38434000	18241000	20194000	68846000	34474000	34372000	84329000	41449000	42880000	64530000	29509000	35021000	55709	212	52474	338110;338111;338112;338113	455921;455922;455923;455924	455922			4	
VMEAFEQAER	0	Unmodified	1208.5496	0.54957253	1020	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.097	33.167	2	0.00041204	28918	160511_QHF_FH_JSI9i_2	75.378	68.158			1.1318	1.0798	24.952	4	0	Median	1.0488	0.88263	NaN	1	0	Median	0.80462	0.96046	NaN	1	0	Median	1.2214	1.2139	NaN	1	0	Median	1.4144	1.5365	NaN	1	0	Median	301910000	144550000	157350000	70041000	30727000	39315000	63833000	30072000	33762000	87245000	44194000	43051000	80789000	39561000	41228000	55710	1020	52475	338114;338115;338116;338117	455925;455926;455927;455928;455929;455930;455931	455927			7	
VMEEEGLKDEEK	2	Unmodified	1434.6548	0.65482546	2643	Q15208	STK38	Serine/threonine-protein kinase 38	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	20.356	19.864	3	0.045708	17322	160511_QHF_FH_JSI12i_1	32.734	11.177			0.75244	0.79689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75244	0.79689	NaN	1	1	Median	21994000	13928000	8065400	0	0	0	0	0	0	0	0	0	21994000	13928000	8065400	55711	2643	52476	338118	455932	455932			1	
VMEEESTEK	1	Unmodified	1080.4645	0.4645055	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	8.8269	8.4761	2	0.00023798	6329	160511_QHF_FH_JSI10i_1	99.136	69.759			0.74629	0.7004	16.973	4	3	Median	0.77066	0.63097	NaN	1	1	Median	0.77956	0.91793	NaN	1	1	Median	0.68916	0.65432	NaN	1	1	Median	0.72268	0.74973	NaN	1	0	Median	313390000	169780000	143620000	72532000	35266000	37266000	88691000	49354000	39337000	62550000	36441000	26109000	89621000	48714000	40907000	55712	2831	52477	338119;338120;338121;338122;338123	455933;455934;455935;455936;455937	455936			5	
VMEGTVAAQDEFYR	0	Unmodified	1614.7348	0.73480712	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	51.059	50.31	2	1.0982E-14	44753	160511_QHF_FH_JSI9i_1	160.18	144.92			1.2802	1.233	6.9447	5	0	Median	1.453	1.2189	6.471	2	0	Median	1.0601	1.233	NaN	1	0	Median	1.2802	1.2372	NaN	1	0	Median	1.0398	1.0703	NaN	1	0	Median	307340000	138670000	168670000	75447000	29087000	46360000	71872000	32699000	39173000	79400000	36507000	42893000	80621000	40372000	40249000	55713	1517	52478	338124;338125;338126;338127;338128;338129;338130	455938;455939;455940;455941;455942;455943;455944;455945;455946;455947;455948;455949;455950	455944			13	
VMEHFIK	1	Oxidation (M)	918.46332	0.4633237	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	2	2	25.026	24.228	2;3	0.0095569	20737	160511_QHF_FH_JSI9i_2	50.127	30.49			1.2873	1.403	100.5	6	1	Median	2.9813	2.5435	NaN	1	0	Median	1.6097	1.9642	NaN	1	0	Median	0.73856	0.71145	123.35	2	1	Median	0.46996	0.53337	109.46	2	0	Median	1019800000	453390000	566420000	173900000	41452000	132440000	225280000	99869000	125410000	458060000	216150000	241910000	162570000	95917000	66651000	55714	982	52479	338131;338132;338133;338134;338135;338136	455951;455952;455953;455954;455955;455956;455957	455954		560	7	
VMEHFIK	1	Unmodified	902.46841	0.46840908	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.53		11	8						5	5	6	7	6	26.642	24.184	2;3	0.0023069	20634	160511_QHF_FH_JSI12i_2	77.674	40.653			0.94302	0.89555	70.285	24	11	Median	1.0608	0.88034	37.575	5	1	Median	0.7001	0.81691	58.608	6	3	Median	0.96041	0.97083	93.638	7	5	Median	0.93471	0.97121	62.873	6	2	Median	19554000000	8256100000	11298000000	2674200000	1166000000	1508200000	3467400000	1773700000	1693700000	8475700000	3285500000	5190200000	4937000000	2030900000	2906100000	55715	982	52479	338137;338138;338139;338140;338141;338142;338143;338144;338145;338146;338147;338148;338149;338150;338151;338152;338153;338154;338155;338156;338157;338158;338159;338160	455958;455959;455960;455961;455962;455963;455964;455965;455966;455967;455968;455969;455970;455971;455972;455973;455974;455975;455976;455977;455978;455979;455980;455981;455982;455983;455984;455985;455986;455987;455988;455989;455990;455991;455992	455963			35	
VMEHFIKLYK	2	Acetyl (K)	1348.7213	0.7213293	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	66.635	57.597	2;3	4.123E-06	31258	160513_QHF_FH_JSI11Kac_6	104.79	96.385			0.27345	0.28634	110.83	5	0	Median	NaN	NaN	NaN	0	0	Median	1.5602	1.8613	16.108	2	0	Median	0.24625	0.23299	12.085	2	0	Median	0.27345	0.28634	NaN	1	0	Median	843290000	577860000	265430000	9333400	9333400	0	147450000	55227000	92220000	637640000	473840000	163800000	48873000	39459000	9414200	55716	982	52480	338161;338162;338163;338164;338165;338166	455993;455994;455995;455996;455997;455998;455999;456000	455994	771		8	
VMEHFIKLYK	2	Acetyl (K);Oxidation (M)	1364.7162	0.71624393	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	1	1		By MS/MS	By MS/MS		16	0									3		2	1		58.744	49.848	2;3	9.7431E-08	27122	160513_QHF_FH_JSI11Kac_6	118.18	92.135			1.2366	1.4723	158.13	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2366	1.4723	158.13	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43811000	28649000	15161000	0	0	0	25763000	10602000	15161000	18048000	18048000	0	0	0	0	55717	982	52480	338167;338168;338169	456001;456002;456003	456001	771	560	3	
VMELFFTVHRK	1	Unmodified	1405.754	0.75402642	4586	Q9C0E2	XPO4	Exportin-4	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	65.994	57.048	3;4	0.00015413	30041	160513_QHF_FH_JSI12Kac_6	64.82	50.562			0.80389	0.95612	18.412	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.85379	1.0076	5.2652	2	0	Median	1.478	1.4746	NaN	1	1	Median	0.98916	1.0831	NaN	1	0	Median	101780000	58455000	43324000	0	0	0	83889000	49958000	33931000	7037700	3092700	3945000	10852000	5403900	5447800	55718	4586	52481	338170;338171;338172;338173	456004;456005;456006;456007;456008;456009	456005			6	
VMELLVHLNK	1	Unmodified	1194.6795	0.67946449	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	63.719	60.741	3	0.013822	53917	160511_QHF_FH_JSI11i_3	40.496	29.177			0.42784	0.41292	18.094	2	2	Median	0.42444	0.36332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43126	0.46928	NaN	1	1	Median	26288000	22334000	3954000	8782600	5846000	2936500	0	0	0	7694500	7694500	0	9811000	8793500	1017500	55719	2997	52482	338174;338175;338176	456010;456011;456012	456010			3	
VMEMYQPSAVVLQCGADSLSGDR	0	Unmodified	2512.1396	0.13962966	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	84.839	84.504	3	1.8616E-09	76991	160511_QHF_FH_JSI11i_1	90.884	76.476			0.96812	0.92358	35.182	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73356	0.83407	NaN	1	0	Median	0.96812	0.92358	NaN	1	0	Median	1.5685	1.604	NaN	1	1	Median	74296000	34804000	39492000	0	0	0	24546000	15880000	8666000	25438000	10297000	15140000	24312000	8627000	15686000	55720	3882	52483	338177;338178;338179	456013;456014;456015;456016;456017	456014			5	
VMENSSGTPDILTR	0	Unmodified	1518.7348	0.73480712	4088	Q96GD4	AURKB	Aurora kinase B	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		45.519	45.116	2	0.0074724	40779	160511_QHF_FH_JSI11i_1	60.49	45.224			0.96549	0.9274	18.382	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96549	0.9274	18.382	2	2	Median	NaN	NaN	NaN	0	0	Median	72173000	37324000	34848000	0	0	0	0	0	0	72173000	37324000	34848000	0	0	0	55721	4088	52484	338180;338181	456018;456019	456018			2	
VMEPILQILQQK	1	Unmodified	1438.8218	0.82177163	1536	P42356	PI4KA	Phosphatidylinositol 4-kinase alpha	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	95.657	95.66	2	0.0051426	85278	160511_QHF_FH_JSI11i_3	53.756	39.066			1.4512	1.4852	22.122	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3182	1.2702	NaN	1	0	Median	1.5976	1.7367	NaN	1	0	Median	20443000	8926300	11516000	0	0	0	0	0	0	9581700	3500700	6081000	10861000	5425600	5435400	55722	1536	52485	338182;338183	456020	456020			1	
VMEPLTASR	0	Unmodified	1002.5168	0.51681584	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				29.346	28.306	2	0.06074	24491	160511_QHF_FH_JSI9i_2	42.109	13.597			1.3298	1.1328	NaN	1	1	Median	1.3298	1.1328	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60240000	29872000	30368000	60240000	29872000	30368000	0	0	0	0	0	0	0	0	0	55723	4914	52486	338184	456021	456021			1	
VMETKPDK	2	Unmodified	946.47937	0.4793677	3902	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	7.1995	6.7407	2;3	0.014693	4848	160511_QHF_FH_JSI10i_2	80.229	56.706			0.89088	0.91952	22.003	5	0	Median	1.7682	1.5026	NaN	1	0	Median	0.89088	1.0931	NaN	1	0	Median	0.91129	0.8976	NaN	1	0	Median	0.81902	0.91291	1.0211	2	0	Median	370450000	189820000	180630000	95616000	43327000	52290000	41831000	18055000	23777000	55927000	31406000	24521000	177070000	97029000	80043000	55724	3902	52487	338185;338186;338187;338188;338189	456022;456023	456023			2	
VMETQAQVDELK	1	Unmodified	1389.681	0.68098063	1754	P51809	VAMP7	Vesicle-associated membrane protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.302	37.684	2	5.1485E-06	33690	160511_QHF_FH_JSI10i_1	123.01	103.02			1.1174	1.1444	10.507	4	0	Median	1.4976	1.2325	NaN	1	0	Median	0.81959	0.97701	NaN	1	0	Median	1.1115	1.092	NaN	1	0	Median	1.1234	1.1992	NaN	1	0	Median	619230000	254190000	365040000	139700000	59874000	79824000	188300000	77250000	111050000	183320000	66110000	117210000	107910000	50955000	56953000	55725	1754	52488	338190;338191;338192;338193	456024;456025;456026;456027;456028;456029	456027			5	
VMETSAQSSGDHQEQHVSVQEMQELK	1	Oxidation (M)	2957.3131	0.31311359	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	37.681	37.6	4	4.2438E-10	31967	160511_QHF_FH_JSI12i_3	79.445	77.132			0.98013	0.94466	4.8202	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98206	0.91301	NaN	1	0	Median	0.9782	0.97742	NaN	1	0	Median	83005000	42885000	40120000	0	0	0	0	0	0	28794000	14252000	14542000	54211000	28633000	25578000	55726	1016	52489	338194;338195	456030;456031;456032;456033	456032		607	4	
VMETSAQSSGDHQEQHVSVQEMQELK	1	Unmodified	2941.3182	0.31819897	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	1	4	2	42.592	42.096	3;4	4.0538E-70	35880	160511_QHF_FH_JSI12i_3	222.69	216.72			0.99194	0.95264	17.682	9	2	Median	1.1795	1.0143	8.8695	2	0	Median	0.76616	0.93071	NaN	1	0	Median	0.95178	0.91646	24.294	4	2	Median	1.001	1.0016	0.2115	2	0	Median	1554800000	772980000	781810000	191740000	74869000	116870000	256850000	132470000	124370000	698940000	373010000	325920000	407280000	192630000	214650000	55727	1016	52489	338196;338197;338198;338199;338200;338201;338202;338203;338204	456034;456035;456036;456037;456038;456039;456040;456041;456042;456043;456044;456045;456046;456047;456048	456048			15	
VMEVFLAQLR	0	Unmodified	1204.6638	0.66381443	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	81.833	72.625	2	0.0061098	40008	160513_QHF_FH_JSI11Kac_6	60.91	43.046			1.0748	1.0894	28.287	4	2	Median	1.8474	1.619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96783	0.92872	NaN	1	0	Median	0.99833	1.0657	25.675	2	2	Median	208920000	102360000	106560000	80220000	34514000	45706000	0	0	0	72047000	37873000	34174000	56654000	29972000	26682000	55728	4234	52490	338205;338206;338207;338208	456049;456050;456051;456052;456053;456054	456050			6	
VMEVMPLMYDLK	1	Unmodified	1467.7176	0.71756583	3621	Q8NCN5	PDPR	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		96.383	96.112	2	0.0068546	85048	160511_QHF_FH_JSI10i_2	51.927	42.494			0.67664	0.66036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67664	0.66036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10292000	6984600	3307400	0	0	0	0	0	0	10292000	6984600	3307400	0	0	0	55729	3621	52491	338209;338210	456055;456056	456056			2	
VMEYINR	0	Unmodified	923.45349	0.4534873	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	25.664	24.929	2	0.010337	20844	160511_QHF_FH_JSI12i_2	75.269	46.756			0.89123	0.81344	41.374	4	0	Median	1.0598	0.86934	NaN	1	0	Median	0.38143	0.44697	NaN	1	0	Median	0.74948	0.76113	NaN	1	0	Median	1.0756	1.2082	NaN	1	0	Median	1851000000	980140000	870860000	406820000	198960000	207850000	107370000	76013000	31361000	846200000	444870000	401330000	490600000	260290000	230310000	55730	2155	52492	338211;338212;338213;338214	456057;456058;456059	456057			3	
VMFEVWR	0	Unmodified	965.47931	0.47930812	2284	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			68.725	67.244	2	0.023369	56292	160511_QHF_FH_JSI10i_3	55.604	38.218			1.2695	1.4636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2695	1.4636	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	58862000	30250000	28612000	0	0	0	58862000	30250000	28612000	0	0	0	0	0	0	55731	2284	52493	338215	456060;456061	456060			2	
VMFHSFVSK	1	Unmodified	1080.5426	0.54263666	4914	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.25			7						4	3	3	2	3	45.838	41.837	2;3	7.4873E-06	35158	160511_QHF_FH_JSI12i_3	93.111	88.695			1.0105	1.0171	12.846	11	0	Median	1.1352	0.91129	7.7965	3	0	Median	1.0105	1.1877	4.4809	3	0	Plateau	1.1036	1.0652	17.837	2	0	Median	0.8625	0.88425	9.3244	3	0	Plateau	1219800000	592750000	627060000	329880000	134050000	195830000	281140000	124140000	157010000	215720000	107380000	108340000	393060000	227180000	165890000	55732	4914	52494	338216;338217;338218;338219;338220;338221;338222;338223;338224;338225;338226	456062;456063;456064;456065;456066;456067;456068;456069;456070;456071;456072;456073;456074;456075;456076;456077;456078;456079	456075			18	
VMFLEMK	1	Unmodified	896.44998	0.44998183	4215	Q96R06	SPAG5	Sperm-associated antigen 5	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	64.025	63.102	2	0.045932	54242	160511_QHF_FH_JSI12i_2	44.447	32.542			1.1856	1.0596	16.247	3	0	Median	1.1856	1.0114	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1131	1.0596	NaN	1	0	Median	1.2307	1.3677	NaN	1	0	Median	35919000	17420000	18499000	7179700	3452000	3727700	0	0	0	16954000	8411100	8543100	11785000	5556800	6228100	55733	4215	52495	338227;338228;338229	456080	456080			1	
VMFSSFGQIEECR	0	Unmodified	1588.7014	0.7013985	3897	Q92879	CELF1	CUGBP Elav-like family member 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	68.986	68.837	2	4.4962E-05	61256	160511_QHF_FH_JSI11i_3	113.63	101.76			1.322	1.2783	11.662	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2533	1.1772	NaN	1	0	Median	1.3945	1.3882	NaN	1	0	Median	150600000	67010000	83588000	0	0	0	0	0	0	74319000	35885000	38434000	76279000	31125000	45154000	55734	3897	52496	338230;338231	456081;456082;456083;456084	456082			4	
VMGEVGK	1	Unmodified	718.36836	0.36836069	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1.25	0.433	3	1								1	1	1	1	10.891	10.563	2	0.05864	8527	160511_QHF_FH_JSI12i_1	41.227	16.229			0.77411	0.7937	18.614	4	0	Median	0.76461	0.64426	NaN	1	0	Median	0.78373	0.92848	NaN	1	0	Median	0.71829	0.69341	NaN	1	0	Median	0.86045	0.90849	NaN	1	0	Median	2472800000	1284400000	1188500000	378300000	183730000	194570000	852390000	420020000	432370000	624600000	382200000	242400000	617550000	298410000	319150000	55735	1798	52497	338232;338233;338234;338235	456085	456085			1	
VMGFGLYLMDGNVSNIYK	1	Unmodified	2019.9798	0.97980519	4066	Q96F07	CYFIP2	Cytoplasmic FMR1-interacting protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		84.184	83.899	3	0.042368	74770	160511_QHF_FH_JSI11i_3	16.306	7.1425			1.35	1.2025	13.888	2	0	Median	1.2908	1.09	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.412	1.3266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1793800000	796730000	997080000	745320000	352750000	392570000	0	0	0	1048500000	443980000	604510000	0	0	0	55736	4066	52498	338236;338237	456086;456087	456086			2	
VMGLSNYHCK	1	Unmodified	1207.5478	0.54779839	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	22.289	22.28	3	0.013936	18269	160511_QHF_FH_JSI12i_3	35.71	26.023			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55737	4140	52499	338238	456088	456088			1	
VMGTFSTVTSTVK	1	Unmodified	1356.6959	0.69590241	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.75	6.41		5	3				2	3	3	4	5	5	2	57.371	51.878	2	4.4981E-06	28483	160513_QHF_FH_JSI10Kac_6	116.77	95.864			1.1202	1.1293	24.151	16	6	Median	1.346	1.1496	13.483	4	1	Median	0.96683	1.143	38.103	5	3	Median	1.1343	1.1075	19.939	5	1	Median	0.99388	1.0735	26.162	2	1	Median	2334300000	1192900000	1141500000	330150000	143970000	186190000	622920000	389600000	233320000	645510000	302810000	342700000	735760000	356490000	379270000	55738	899	52500	338239;338240;338241;338242;338243;338244;338245;338246;338247;338248;338249;338250;338251;338252;338253;338254	456089;456090;456091;456092;456093;456094;456095;456096;456097;456098;456099;456100;456101;456102;456103;456104;456105;456106;456107;456108	456108			20	
VMGTFSTVTSTVK	1	Oxidation (M)	1372.6908	0.69081704	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	42.673	42.451	2	0.033007	36208	160511_QHF_FH_JSI12i_3	59.542	52.654			1.897	1.8816	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.897	1.8816	NaN	1	1	Median	30151000	9225000	20926000	0	0	0	0	0	0	0	0	0	30151000	9225000	20926000	55739	899	52500	338255	456109	456109			1	
VMHPETMNTSGHDFEEL	0	Unmodified	1972.8295	0.82951214	4287	Q99574	SERPINI1	Neuroserpin	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	53.383	52.413	3	0.0185	45353	160511_QHF_FH_JSI11i_2	31.42	27.872			1.1091	1.1172	9.3887	4	0	Median	1.1291	0.97096	NaN	1	0	Median	0.84758	1.0672	NaN	1	0	Median	1.2092	1.1905	NaN	1	0	Median	1.0894	1.1696	NaN	1	0	Median	230990000	111580000	119410000	38682000	13101000	25581000	96220000	55949000	40272000	55859000	21280000	34579000	40228000	21247000	18981000	55740	4287	52501	338256;338257;338258;338259	456110	456110			1	
VMIGENVDEK	1	Unmodified	1132.5434	0.54342452	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	32.746	31.93	2	6.6394E-05	28476	160511_QHF_FH_JSI11i_1	89.886	67.926			0.82933	0.95884	11.564	7	0	Linear	0.93072	0.78299	17.867	2	0	Median	0.7713	0.92867	12.147	2	0	Median	0.92003	0.90157	NaN	1	0	Median	0.7765	0.86179	4.4285	2	0	Median	7293900000	3746200000	3547800000	1614200000	830520000	783660000	2005500000	1112500000	893000000	1956100000	957380000	998720000	1718200000	845810000	872380000	55741	1372	52502	338260;338261;338262;338263;338264;338265;338266	456111;456112;456113;456114;456115;456116;456117;456118;456119;456120;456121;456122;456123;456124	456112			14	
VMIGENVDEK	1	Oxidation (M)	1148.5383	0.53833914	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1	0	2									1			1	32.951	32.031	2	0.00010965	28788	160511_QHF_FH_JSI12i_1	88.681	71.441			1.8301	1.6891	4.39	2	1	Median	2.1278	1.7424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.574	1.6375	NaN	1	0	Median	291160000	131090000	160070000	123800000	42619000	81180000	0	0	0	0	0	0	167360000	88475000	78886000	55742	1372	52502	338267;338268	456125;456126;456127	456125		1014	3	
VMIGENVDEKHLPTLDHPIIPADYVAIK	2	Acetyl (K)	3168.6529	0.65292197	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.374	79.096	4	5.794E-49	45497	160513_QHF_FH_JSI10Kac_6	168.72	159.13			0.67843	1.047	34.182	3	0	Plateau	1.2288	1.047	NaN	1	0	Median	1.0203	1.1891	NaN	1	0	Median	0.66372	0.62366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	740940000	452680000	288260000	98884000	35781000	63103000	175770000	84006000	91763000	380760000	247360000	133390000	85527000	85527000	0	55743	1372	52503	338269;338270;338271;338272	456128;456129;456130;456131;456132;456133	456132	1315		6	
VMIITGPNMGGK	1	Unmodified	1216.6308	0.63079974	1176	P20585	MSH3	DNA mismatch repair protein Msh3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.584	54.066	2	0.0044316	46789	160511_QHF_FH_JSI11i_2	56.013	30.454			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55744	1176	52504	338273	456134	456134			1	
VMIPQDEYPEINFVGLLIGPR	0	Unmodified	2399.2559	0.2559037	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.84		4	2						6	2	4	3	3	100.46	96.347	2;3	7.1909E-47	50987	160513_QHF_FH_JSI11Kac_6	213.83	194.76			1.0789	1.0948	12.283	12	0	Median	1.2947	1.1099	4.9682	2	0	Median	0.88584	1.0817	12.137	4	0	Median	1.0838	1.0374	5.0771	3	0	Median	1.1067	1.1558	11.664	3	0	Plateau	3847400000	1847000000	2000300000	624100000	269210000	354890000	1017700000	523070000	494610000	1076300000	509680000	566610000	1129300000	545080000	584220000	55745	2689	52505	338274;338275;338276;338277;338278;338279;338280;338281;338282;338283;338284;338285	456135;456136;456137;456138;456139;456140;456141;456142;456143;456144;456145;456146;456147	456139			13	
VMIPQDEYPEINFVGLLIGPR	0	Oxidation (M)	2415.2508	0.25081832	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	12.8	5.63			1						3	1		1	2	97.858	88.538	3	7.8561E-17	48509	160513_QHF_FH_JSI12Kac_6	128.05	120.42			1.2828	1.3079	6.9265	3	0	Median	1.5389	1.3079	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2271	1.1801	NaN	1	0	Median	1.2828	1.3464	NaN	1	0	Median	424070000	199140000	224930000	94555000	40908000	53647000	0	0	0	121280000	62301000	58981000	208230000	95932000	112300000	55746	2689	52505	338286;338287;338288;338289	456148;456149;456150;456151	456151		2102	3	
VMIPVPAGVEDGQTVR	0	Unmodified	1666.8712	0.87124102	4062	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	8	7								4	4	2	5	78.968	78.435	2;3	7.2971E-05	61779	160511_QHF_FH_JSI9i_1	89.548	80.819			0.97848	0.95201	31.372	14	3	Median	1.0047	0.85681	33.114	4	1	Linear	0.61315	0.73329	30.93	4	0	Median	0.97848	0.95714	3.9613	2	0	Median	0.93886	1.0143	42.605	4	2	Median	540930000	284190000	256730000	140910000	61571000	79340000	163240000	100440000	62802000	107470000	56039000	51426000	129310000	66142000	63164000	55747	4062	52506	338290;338291;338292;338293;338294;338295;338296;338297;338298;338299;338300;338301;338302;338303;338304	456152;456153;456154;456155;456156;456157;456158;456159;456160;456161;456162;456163;456164;456165;456166;456167	456161			15	
VMIYQDEVK	1	Unmodified	1123.5583	0.5583463	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	40.671	39.969	2	0.00015459	35316	160511_QHF_FH_JSI9i_1	88.948	72.745			1.5304	1.2361	22.088	5	2	Median	1.5304	1.2312	NaN	1	0	Median	0.91315	1.0997	16.536	2	2	Median	1.597	1.5452	NaN	1	0	Median	1.6533	1.7247	NaN	1	0	Median	1805400000	776580000	1028900000	240280000	86385000	153900000	572930000	260830000	312100000	522590000	253330000	269260000	469640000	176040000	293610000	55748	3085	52507	338305;338306;338307;338308;338309	456168;456169;456170;456171;456172;456173;456174;456175	456173			8	
VMKFSVSPVVR	1	Acetyl (K)	1289.7166	0.71657828	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3		2	2	1	75.274	65.287	2	0.0019424	35349	160513_QHF_FH_JSI11Kac_6	78.513	59.534			0.25894	0.26789	77.121	4	0	Median	NaN	NaN	NaN	0	0	Median	0.94803	1.1274	NaN	1	0	Median	0.23294	0.22543	9.018	2	0	Median	0.27816	0.29868	NaN	1	0	Median	420480000	345770000	74709000	0	0	0	9261600	4338900	4922600	382340000	319210000	63121000	28879000	22214000	6665300	55749	1033	52508	338310;338311;338312;338313;338314	456176;456177;456178;456179	456176	858		4	
VMLALPSVR	0	Unmodified	984.57902	0.57902216	2673	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	68.002	67.224	2	0.00025368	58172	160511_QHF_FH_JSI12i_3	97.798	81.243			1.1783	1.1123	16.236	5	1	Median	1.1783	1.0137	NaN	1	0	Median	0.90458	1.1123	NaN	1	0	Median	1.1961	1.1756	NaN	1	0	Median	0.97035	1.0283	29.832	2	1	Median	292500000	148440000	144060000	44378000	25145000	19233000	46012000	26825000	19187000	55065000	27808000	27257000	147040000	68662000	78380000	55750	2673	52509	338315;338316;338317;338318;338319	456180;456181;456182;456183	456183			4	
VMLAPMQGQR	0	Oxidation (M)	1145.5685	0.56853383	5843				yes	yes	0	0	1	0		By MS/MS			1	0	1										1			43.007	42.596	2	0.0047819	38276	160511_QHF_FH_JSI10i_1	66.682	57.819	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55751	5843	52510	338320	456184	456184		2765	1	
VMLDLLQIPYDK	1	Unmodified	1446.7792	0.77923811	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.64	100.51	2	1.2487E-05	88960	160511_QHF_FH_JSI10i_2	126.67	87.649			0.96462	1.0431	9.5383	4	1	Median	1.0093	0.86859	NaN	1	0	Median	0.83718	1.0365	NaN	1	1	Median	1.0659	1.0637	NaN	1	0	Median	0.92188	1.0497	NaN	1	0	Median	154610000	80298000	74308000	38350000	18663000	19687000	21605000	11378000	10227000	26880000	12482000	14398000	67771000	37775000	29996000	55752	2547	52511	338321;338322;338323;338324	456185;456186;456187;456188;456189;456190	456190			6	
VMLEDGR	0	Unmodified	818.39564	0.39563807	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By matching		1.5	0.5	1	1									1	1		17.757	17.494	2	0.045378	14899	160511_QHF_FH_JSI10i_1	44.721	26.036			0.49722	0.54194	56.353	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69432	0.80725	NaN	1	0	Median	0.35607	0.36383	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	768130000	480920000	287210000	0	0	0	334000000	175490000	158510000	434130000	305430000	128700000	0	0	0	55753	2385	52512	338325;338326	456191	456191			1	
VMLESFIDTQK	1	Unmodified	1309.6588	0.65878863	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	3.42	3	8	2					1		3	3	5	3	71.273	69.669	2;3	9.482E-05	60197	160511_QHF_FH_JSI12i_2	56.359	47.614			0.9592	0.94485	40.148	13	3	Median	1.0997	0.92242	4.2291	2	0	Median	0.80076	0.95958	15.898	3	0	Plateau	0.84697	0.83988	56.845	5	2	Median	1.0172	1.1302	13.684	3	1	Median	1042100000	533830000	508230000	185000000	89382000	95617000	280450000	158340000	122120000	320000000	163130000	156870000	256600000	122980000	133620000	55754	1674	52513	338327;338328;338329;338330;338331;338332;338333;338334;338335;338336;338337;338338;338339;338340	456192;456193;456194;456195;456196;456197;456198;456199;456200;456201;456202;456203;456204;456205;456206;456207;456208;456209;456210;456211	456196			19	
VMLETPEYR	0	Unmodified	1136.5536	0.55359527	5015	Q9NUQ9;Q9H0Q0	FAM49B;FAM49A	Protein FAM49B;Protein FAM49A	yes	no	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									1	2		44.515	44.107	2	7.5297E-05	39620	160511_QHF_FH_JSI10i_1	95.909	76.432			0.60778	0.65101	99.25	2	1	Median	NaN	NaN	NaN	0	0	Median	0.27724	0.3227	NaN	1	0	Median	1.3324	1.3133	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	363780000	185520000	178270000	0	0	0	138250000	111180000	27071000	225530000	74340000	151190000	0	0	0	55755	5015	52514	338341;338342;338343	456212;456213;456214	456213			3	
VMLGETNPADSK	1	Unmodified	1260.602	0.60200203	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.18	4	4	2				3			3	4	3	3	35.115	31.855	2	7.2848E-11	28904	160511_QHF_FH_JSI11i_1	147.95	136.1			0.95212	0.97586	16.835	11	0	Median	1.3051	1.1116	41.43	2	0	Median	0.77546	1.0128	6.701	3	0	Plateau	0.966	0.9439	7.6261	3	0	Plateau	0.95212	1.0214	14.663	3	0	Plateau	7765800000	3949000000	3816800000	1844300000	877370000	966910000	2037700000	1092600000	945060000	2159300000	1094800000	1064500000	1724500000	884250000	840280000	55756	1209;1079	52515	338344;338345;338346;338347;338348;338349;338350;338351;338352;338353;338354;338355;338356	456215;456216;456217;456218;456219;456220;456221;456222;456223;456224;456225;456226;456227;456228;456229;456230;456231;456232;456233;456234;456235;456236;456237;456238;456239	456218			23	
VMLGETNPADSK	1	Oxidation (M)	1276.5969	0.59691665	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	26.648	26.457	2	1.3923E-06	28805	160511_QHF_FH_JSI12i_1	107.06	86.084			10.786	10.506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.786	10.506	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	736980000	59660000	677320000	0	0	0	0	0	0	736980000	59660000	677320000	0	0	0	55757	1209;1079	52515	338357;338358;338359	456240;456241;456242	456241		722	3	
VMLGETNPADSKPGTIR	1	Oxidation (M)	1800.904	0.90399771	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.21	3	6	9				2	4	4	4	8	9	7	40.158	35.972	2;3	2.9314E-32	35567	160511_QHF_FH_JSI11i_3	156.8	132.45			0.99915	1.076	18.904	26	0	Median	1.2522	1.0665	6.6493	4	0	Median	0.91377	1.0939	10.888	8	0	Median	0.96096	0.98709	32.15	7	0	Median	1.0068	1.0958	15.99	7	0	Median	8994500000	4499900000	4494700000	1026000000	474290000	551720000	2310600000	1166300000	1144300000	3713600000	1854500000	1859100000	1944400000	1004700000	939650000	55758	1209;1079	52516	338360;338361;338362;338363;338364;338365;338366;338367;338368;338369;338370;338371;338372;338373;338374;338375;338376;338377;338378;338379;338380;338381;338382;338383;338384;338385;338386;338387	456243;456244;456245;456246;456247;456248;456249;456250;456251;456252;456253;456254;456255;456256;456257;456258;456259;456260;456261;456262;456263;456264;456265;456266;456267;456268;456269;456270;456271;456272;456273;456274;456275;456276;456277;456278;456279;456280;456281;456282;456283;456284;456285;456286;456287;456288;456289;456290;456291;456292	456249		722	49	
VMLGETNPADSKPGTIR	1	Unmodified	1784.9091	0.90908309	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.35	5.71	7	10	11				1	4	4	8	10	10	9	43.313	40.34	2;3	1.4983E-136	35599	160511_QHF_FH_JSI11i_3	291.51	269.49			0.98063	0.98744	22.67	37	11	Median	1.1755	0.98143	36.493	8	4	Median	0.89612	1.0023	18.548	10	2	Median	0.99926	0.98662	18.579	10	2	Median	0.94481	0.99608	16.322	9	3	Median	114990000000	55824000000	59168000000	18546000000	8557800000	9988600000	27118000000	14237000000	12880000000	43478000000	20232000000	23246000000	25849000000	12797000000	13053000000	55759	1209;1079	52516	338388;338389;338390;338391;338392;338393;338394;338395;338396;338397;338398;338399;338400;338401;338402;338403;338404;338405;338406;338407;338408;338409;338410;338411;338412;338413;338414;338415;338416;338417;338418;338419;338420;338421;338422;338423;338424	456293;456294;456295;456296;456297;456298;456299;456300;456301;456302;456303;456304;456305;456306;456307;456308;456309;456310;456311;456312;456313;456314;456315;456316;456317;456318;456319;456320;456321;456322;456323;456324;456325;456326;456327;456328;456329;456330;456331;456332;456333;456334;456335;456336;456337;456338;456339;456340;456341;456342;456343;456344;456345;456346;456347;456348;456349;456350;456351;456352;456353;456354;456355;456356;456357;456358;456359;456360;456361;456362;456363;456364;456365;456366;456367;456368;456369;456370;456371;456372;456373	456296			81	
VMLGETNPADSKPGTIR	1	Acetyl (K);Oxidation (M)	1842.9146	0.9145624	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	1	0	1	1		By MS/MS		By MS/MS	14	0							2				1		1	60.102	49.426	2;3	0.019383	27671	160513_QHF_FH_JSI12Kac_4	45.257	31.293			2.2532	2.5521	137.02	2	1	Median	NaN	NaN	NaN	0	0	Median	5.6767	6.7249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89431	0.96855	NaN	1	0	Median	8172200	2691400	5480800	0	0	0	6703500	1917900	4785600	0	0	0	1468700	773580	695160	55760	1209;1079	52516	338425;338426	456374;456375	456375	923	722	2	
VMLGETNPADSKPGTIR	1	Acetyl (K)	1826.9196	0.91964777	1209;1079	P22392;O60361;P15531	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	no	no	1	0	0	1		By MS/MS		By MS/MS	14	0							4				2		2	65.366	54.661	2;3	0.00023607	29678	160513_QHF_FH_JSI10Kac_4	80.738	64.894			0.81488	0.92804	28.746	2	1	Median	NaN	NaN	NaN	0	0	Median	0.94935	1.1372	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69946	0.75734	NaN	1	0	Median	10229000	4786600	5442800	0	0	0	5900700	2831100	3069600	0	0	0	4328600	1955400	2373200	55761	1209;1079	52516	338427;338428;338429;338430	456376;456377;456378;456379;456380	456376	923		5	
VMLLQQGLNDRSDAVK	1	Unmodified	1785.9407	0.94071757	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			53.807	52.237	3	0.00022049	43705	160511_QHF_FH_JSI10i_3	67.136	55.522			0.95836	0.94793	2.2984	2	0	Median	1.1915	0.96347	NaN	1	0	Median	0.77083	0.93265	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	128720000	51544000	77179000	43883000	19588000	24296000	84840000	31957000	52883000	0	0	0	0	0	0	55762	4337	52517	338431;338432	456381;456382	456381			2	
VMLMASPSMEDLYHK	1	Unmodified	1750.8092	0.80923439	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	72.011	71.467	3	1.9156E-07	62981	160511_QHF_FH_JSI9i_2	141.46	126.07			1.5426	1.7273	52.029	6	6	Median	1.2126	1.0645	NaN	1	1	Median	1.3879	1.7188	NaN	1	1	Median	2.6092	2.5329	53.441	2	2	Median	2.1043	2.2582	71.2	2	2	Median	914240000	376400000	537840000	126490000	54647000	71840000	210280000	89581000	120700000	328520000	126720000	201810000	248960000	105460000	143500000	55763	3438	52518	338433;338434;338435;338436;338437;338438;338439	456383;456384;456385;456386;456387;456388;456389;456390;456391	456388			9	
VMLQHELR	0	Unmodified	1024.5488	0.54878467	2588	Q14997	PSME4	Proteasome activator complex subunit 4	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	22.553	22.548	3	0.042621	18591	160511_QHF_FH_JSI12i_3	50.04	37.993			1.1011	1.1022	11.708	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2761	1.1973	NaN	1	0	Median	0.95012	1.0146	NaN	1	0	Median	150080000	72891000	77190000	0	0	0	0	0	0	79498000	33879000	45619000	70583000	39013000	31571000	55764	2588	52519	338440;338441	456392	456392			0	
VMLVKHK	2	Acetyl (K)	895.53134	0.53134369	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	1	0	0	1			By MS/MS		16	0									1			1		29.472	20.274	3	0.042566	11812	160513_QHF_FH_JSI11Kac_6	41.652	29.296			0.037077	0.036648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.037077	0.036648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13035000	12353000	681950	0	0	0	0	0	0	13035000	12353000	681950	0	0	0	55765	1215;1121	52520	338442	456393	456393			1	
VMLVNSMNTVK	1	Unmodified	1234.6414	0.64136442	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	6.21	3	4	4					3	2	3	4	6	3	53.19	49.411	2	2.3578E-07	42367	160511_QHF_FH_JSI12i_2	121.73	101.21			0.99239	0.97145	19.954	16	2	Median	1.1041	0.95102	4.0191	3	0	Plateau	0.82701	0.98551	2.8943	4	0	Median	1.0426	1.0182	31.002	6	2	Median	0.84472	0.94863	22.214	3	0	Median	2734600000	1379600000	1355000000	412030000	210790000	201240000	609720000	331480000	278230000	952920000	451120000	501790000	759940000	386180000	373760000	55766	1139	52521	338443;338444;338445;338446;338447;338448;338449;338450;338451;338452;338453;338454;338455;338456;338457;338458	456394;456395;456396;456397;456398;456399;456400;456401;456402;456403;456404;456405;456406;456407;456408;456409;456410;456411;456412;456413;456414;456415;456416;456417	456398			24	
VMLVNSMNTVK	1	Oxidation (M)	1250.6363	0.63627905	1139	P18206	VCL	Vinculin	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2	0		2									1		1	36.171	34.827	2	0.0042201	36679	160511_QHF_FH_JSI10i_2	66.27	37.872			1.1075	1.213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1075	1.213	NaN	1	0	Median	19411000	8453500	10957000	0	0	0	0	0	0	0	0	0	19411000	8453500	10957000	55767	1139	52521	338459;338460	456418;456419;456420	456420		777	3	
VMLYPSR	0	Unmodified	864.45276	0.45275902	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.62	2	4	2						4	2	4	3	3	36.741	33.194	2	0.0077995	28273	160511_QHF_FH_JSI12i_3	86.086	62.114			1.0449	1.1203	13.005	12	0	Median	1.3039	1.104	24.576	2	0	Median	1.0349	1.2377	8.9744	4	0	Median	0.96586	0.97527	9.6239	3	0	Median	1.0073	1.1163	11.75	3	0	Median	2845400000	1354700000	1490600000	576900000	248300000	328600000	764900000	377730000	387170000	774510000	379550000	394960000	729050000	349150000	379900000	55768	1135	52522	338461;338462;338463;338464;338465;338466;338467;338468;338469;338470;338471;338472	456421;456422;456423;456424;456425;456426;456427;456428;456429	456428			9	
VMLYPSRI	0	Unmodified	977.53682	0.536823	1135	P18077	RPL35A	60S ribosomal protein L35a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	6.34	2	5	4					1	4	4	5	4	3	58.948	55.69	2	0.0003809	48970	160511_QHF_FH_JSI9i_2	110.36	90.886			1.1534	1.1272	14.412	14	1	Median	1.4655	1.2382	12.691	4	0	Median	0.88083	1.0399	12.02	4	1	Median	1.1936	1.1371	9.9789	3	0	Median	0.96082	1.0445	17.674	3	0	Median	21695000000	10292000000	11402000000	2632300000	1078300000	1554000000	4689200000	2249700000	2439500000	6528800000	3018900000	3509900000	7844300000	3945100000	3899100000	55769	1135	52523	338473;338474;338475;338476;338477;338478;338479;338480;338481;338482;338483;338484;338485;338486;338487;338488	456430;456431;456432;456433;456434;456435;456436;456437;456438;456439;456440;456441;456442;456443;456444;456445;456446;456447;456448;456449;456450;456451;456452;456453;456454;456455;456456	456444			27	
VMMASASDYFK	1	Unmodified	1248.5519	0.55188071	5221	Q9P2N7	KLHL13	Kelch-like protein 13	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	58.511	57.592	2	0.021733	49419	160511_QHF_FH_JSI12i_2	41.54	38.562			1.3258	1.4063	17.062	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5357	1.5866	NaN	1	0	Median	1.1446	1.2464	NaN	1	0	Median	72884000	34096000	38788000	0	0	0	0	0	0	34992000	14080000	20912000	37893000	20016000	17876000	55770	5221	52524	338489;338490	456457	456457			1	
VMMEGGR	0	Unmodified	778.34658	0.34657939	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	3	2	10.806	10.416	2	0.0016681	7925	160511_QHF_FH_JSI12i_2	118.06	81.469			0.95134	0.98844	17.503	9	0	Median	1.2466	1.0458	27.917	2	0	Median	0.86329	1.0339	11.91	2	0	Median	1.1295	1.154	24.873	3	0	Median	0.91603	0.98492	0.5047	2	0	Median	5324100000	2657200000	2666900000	972060000	422740000	549320000	1236800000	669180000	567630000	1971400000	975020000	996350000	1143900000	590290000	553570000	55771	1009;4688	52525	338491;338492;338493;338494;338495;338496;338497;338498;338499	456458;456459;456460;456461;456462;456463;456464;456465;456466;456467;456468;456469	456461			12	
VMMLVYPEELKPVLTQAK	2	Unmodified	2088.1363	0.13630583	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		94.137	93.808	3	0.013889	82307	160511_QHF_FH_JSI9i_2	41.422	31.323			0.76226	0.78857	17.56	4	4	Median	0.80355	0.69563	NaN	1	1	Median	0.66035	0.82185	NaN	1	1	Median	0.85545	0.88938	22.858	2	2	Median	NaN	NaN	NaN	0	0	Median	88098000	47160000	40938000	14113000	7353000	6760200	30275000	18481000	11794000	43710000	21326000	22384000	0	0	0	55772	2977	52526	338500;338501;338502;338503	456470;456471;456472;456473	456470			4	
VMMVALGR	0	Unmodified	875.47211	0.47211425	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		10.8	6.37			2						3	2	2	1		54.237	48.12	2	0.018358	40340	160511_QHF_FH_JSI10i_3	47.75	20.433			0.98796	1.0689	10.032	5	0	Median	1.1715	0.99618	10.388	2	0	Median	0.9617	1.1061	4.838	2	0	Median	0.94791	0.91063	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	457050000	224210000	232830000	148020000	70457000	77567000	186280000	88879000	97406000	122740000	64878000	57861000	0	0	0	55773	5365	52527	338504;338505;338506;338507;338508	456474;456475;456476;456477	456474			4	
VMNILHR	0	Unmodified	881.49054	0.49054151	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			27.047	25.715	3	0.01522	20709	160511_QHF_FH_JSI9i_3	40.103	19.548			1.1309	1.0966	45.98	2	0	Median	0.97839	0.79223	NaN	1	0	Median	1.3072	1.5179	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77046000	36837000	40209000	44326000	18429000	25897000	32720000	18407000	14312000	0	0	0	0	0	0	55774	1306	52528	338509;338510	456478	456478			1	
VMNLISK	1	Unmodified	803.45751	0.45751004	1707	P50502;Q8NFI4	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	35.192	34.436	2	0.04193	28764	160511_QHF_FH_JSI10i_3	46.426	15.136			0.81817	0.87172	24.981	4	0	Median	1.3153	1.0875	NaN	1	0	Median	0.63665	0.74589	NaN	1	0	Median	0.66421	0.64433	NaN	1	0	Median	1.0078	1.0188	NaN	1	0	Median	1842300000	930500000	911760000	321100000	156070000	165030000	264180000	164070000	100110000	597180000	308350000	288830000	659800000	302010000	357790000	55775	1707	52529	338511;338512;338513;338514	456479	456479			1	
VMNMEESNNGSLSAEFK	1	Unmodified	1885.8186	0.8186131	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				56.414	55.262	2	2.7793E-05	49103	160511_QHF_FH_JSI9i_1	95.018	86.289			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13075000	13075000	0	13075000	13075000	0	0	0	0	0	0	0	0	0	0	55776	1500	52530	338515	456480	456480			1	
VMNTGSQFVMEGVK	1	Unmodified	1525.7269	0.72688497	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	55.907	55.139	2	1.1544E-09	47727	160511_QHF_FH_JSI11i_2	144.65	134.12			1.3633	1.4539	16.579	6	2	Median	1.7283	1.5328	NaN	1	0	Median	1.3677	1.6803	0.99881	2	1	Median	1.2859	1.2624	12.496	2	1	Median	1.0913	1.189	NaN	1	0	Median	326180000	135960000	190210000	48407000	16834000	31573000	101370000	40730000	60640000	137080000	54622000	82462000	39316000	23778000	15539000	55777	3785	52531	338516;338517;338518;338519;338520;338521	456481;456482;456483;456484;456485;456486;456487;456488;456489;456490	456488			10	
VMPAPPPK	1	Unmodified	835.4626	0.46259542	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.481	7	4								3	2	2	4	23.316	22.693	2	0.0032937	19958	160511_QHF_FH_JSI12i_1	73.039	58.882			1.2075	1.2797	26.147	7	3	Median	1.4739	1.2377	30.436	2	1	Median	0.98282	1.1719	25.457	2	1	Median	1.2655	1.253	49.573	2	0	Median	1.2075	1.2797	NaN	1	1	Median	2903100000	1430900000	1472200000	719350000	336950000	382400000	674650000	344970000	329680000	763330000	423830000	339490000	745780000	325150000	420630000	55778	1237	52532	338522;338523;338524;338525;338526;338527;338528;338529;338530;338531;338532	456491;456492;456493;456494;456495;456496;456497;456498;456499;456500;456501;456502;456503;456504;456505;456506	456496			16	
VMPAPPPK	1	Oxidation (M)	851.45751	0.45751004	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	23.418	22.698	2	0.010579	19694	160511_QHF_FH_JSI11i_1	60.788	48.527			1.1605	1.0982	30.569	4	0	Median	0.9719	0.82183	11.64	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4346	1.4022	NaN	1	0	Median	1.321	1.3515	NaN	1	0	Median	382990000	182660000	200340000	143430000	72103000	71323000	0	0	0	122590000	63990000	58601000	116980000	46566000	70412000	55779	1237	52532	338533;338534;338535;338536;338537	456507;456508;456509;456510;456511	456507		871	5	
VMPAQLK	1	Unmodified	785.44695	0.44694536	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	27.758	27.009	2	0.037209	23907	160511_QHF_FH_JSI10i_1	48.761	35.208			0.68728	0.76303	8.913	5	0	Median	0.95114	0.81822	NaN	1	0	Median	0.57467	0.69428	3.7182	2	0	Median	0.84809	0.83382	NaN	1	0	Median	0.68728	0.76303	NaN	1	0	Median	877710000	480300000	397420000	262020000	130910000	131110000	355370000	211690000	143670000	117880000	61976000	55902000	142460000	75723000	66733000	55780	4272	52533	338538;338539;338540;338541;338542	456512;456513;456514;456515	456513			4	
VMPFSTACNTPLSNFESHQNYK	1	Oxidation (M)	2587.1472	0.14715788	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0		By MS/MS	By MS/MS		3	0			2								1	1		67.489	66.748	3	0.00042089	59259	160511_QHF_FH_JSI11i_3	44.729	41.928			0.88887	0.936	7.5737	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84208	0.9875	NaN	1	1	Median	0.93825	0.88719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75003000	40275000	34727000	0	0	0	17712000	10102000	7609700	57291000	30173000	27117000	0	0	0	55781	1520	52534	338543;338544	456516;456517	456516		1201	2	
VMPFSTACNTPLSNFESHQNYK	1	Unmodified	2571.1522	0.15224326	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	3	2	1	75.811	75.036	3	1.0778E-46	66896	160511_QHF_FH_JSI11i_3	203.81	196.94			0.97064	1.1218	22.218	6	0	Median	1.239	1.0376	30.185	2	0	Median	0.9667	1.1376	5.6668	2	0	Median	0.78612	0.7281	NaN	1	0	Median	1.1283	1.1514	NaN	1	0	Median	1215500000	630930000	584600000	118650000	54771000	63875000	230680000	125020000	105670000	717970000	378630000	339340000	148230000	72512000	75717000	55782	1520	52534	338545;338546;338547;338548;338549;338550;338551;338552	456518;456519;456520;456521;456522;456523;456524;456525;456526;456527;456528;456529;456530;456531;456532	456519			15	
VMPFVAMIK	1	Unmodified	1034.5657	0.56568029	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		4	4						3	3	3	3	2	83.509	80.86	2	0.00012089	69599	160511_QHF_FH_JSI10i_3	91.906	61.721			1.1554	1.114	23.569	11	0	Median	1.1548	0.99972	22.208	3	0	Median	0.7859	0.93802	33.977	3	0	Median	1.1554	1.114	12.363	3	0	Median	1.3448	1.4527	16.027	2	0	Median	2349000000	1106100000	1242800000	453810000	201470000	252340000	461270000	239660000	221610000	757990000	366920000	391080000	675880000	298090000	377790000	55783	5215	52535	338553;338554;338555;338556;338557;338558;338559;338560;338561;338562;338563	456533;456534;456535;456536;456537;456538;456539;456540;456541;456542;456543;456544;456545;456546;456547;456548;456549;456550;456551;456552;456553;456554;456555	456537			23	
VMPLIIQGFK	1	Unmodified	1144.6678	0.66783717	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	85.717	85.055	2	2.6351E-07	74810	160511_QHF_FH_JSI11i_2	113.89	106.83			0.99232	0.98899	14.956	8	0	Median	1.2123	1.0064	7.5037	2	0	Median	0.87556	1.0236	6.7001	2	0	Median	0.88767	0.87622	18.96	2	0	Median	0.9957	1.066	25.888	2	0	Median	1462300000	658150000	804170000	264880000	124970000	139910000	275600000	142750000	132850000	444540000	193010000	251530000	477300000	197430000	279870000	55784	1691	52536	338564;338565;338566;338567;338568;338569;338570;338571	456556;456557;456558;456559;456560;456561;456562;456563;456564;456565;456566;456567;456568;456569;456570;456571;456572	456566			17	
VMPNAIVQSVGVSSGK	1	Unmodified	1571.8341	0.83412723	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.74	9	7	9				4	6		9	11	10	5	67.259	63.577	2;3	5.8747E-07	56881	160511_QHF_FH_JSI11i_3	163.51	132.01			1.0401	1.0265	21.502	30	0	Median	1.1083	0.92872	35.319	7	0	Median	0.91883	1.0689	15.985	8	0	Median	1.0639	1.0321	7.3478	10	0	Median	1.0069	1.0245	12.727	5	0	Median	3426000000	1759000000	1667000000	543830000	294190000	249640000	597490000	318820000	278670000	1165000000	576040000	588920000	1119700000	569990000	549750000	55785	736	52537	338572;338573;338574;338575;338576;338577;338578;338579;338580;338581;338582;338583;338584;338585;338586;338587;338588;338589;338590;338591;338592;338593;338594;338595;338596;338597;338598;338599;338600;338601;338602;338603;338604;338605;338606	456573;456574;456575;456576;456577;456578;456579;456580;456581;456582;456583;456584;456585;456586;456587;456588;456589;456590;456591;456592;456593;456594;456595;456596;456597;456598;456599;456600;456601;456602;456603;456604;456605;456606;456607;456608;456609;456610;456611;456612;456613;456614;456615;456616;456617;456618;456619;456620;456621;456622;456623;456624;456625;456626	456576			54	
VMQEEIFGPILPIVPVK	1	Unmodified	1908.0794	0.07944288	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	1.75	0.433	1	3								1	2		1	101.97	101.86	3	1.6141E-05	89692	160511_QHF_FH_JSI9i_2	83.106	79.265			1.1141	0.98366	15.116	3	0	Plateau	1.1141	0.94581	NaN	1	0	Median	1.0273	1.2505	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87763	0.98366	NaN	1	0	Median	341290000	177910000	163370000	200920000	96650000	104270000	76086000	39219000	36866000	0	0	0	64275000	42043000	22232000	55786	1745	52538	338607;338608;338609;338610	456627;456628	456628			2	
VMQENSSSFSDLSER	0	Unmodified	1714.7468	0.74682837	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	41.491	40.995	2	1.9759E-06	37040	160511_QHF_FH_JSI11i_1	129.84	115.42			1.0585	1.1299	14.028	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0006	1.1872	NaN	1	0	Median	1.1196	1.0753	NaN	1	0	Median	1.0022	1.0617	22.419	2	2	Median	166450000	76255000	90194000	0	0	0	36548000	17589000	18959000	51823000	23764000	28059000	78078000	34903000	43176000	55787	3306	52539	338611;338612;338613;338614;338615	456629;456630;456631;456632;456633;456634;456635	456630			7	
VMQENSSSFSDLSERR	0	Unmodified	1870.8479	0.84793939	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			35.97	34.968	3	0.00017414	30725	160511_QHF_FH_JSI10i_2	63.709	50.282			1.0453	1.0584	0.39307	2	0	Median	1.2438	1.0555	NaN	1	0	Median	0.87842	1.0614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94541000	46762000	47778000	51414000	23031000	28383000	43127000	23731000	19396000	0	0	0	0	0	0	55788	3306	52540	338616;338617	456636;456637;456638;456639	456639			4	
VMQEQGTHPK	1	Unmodified	1153.555	0.55499226	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.45	4	8	5				2	7	3	4	8	9	8	5.8954	2.1425	2;3	5.2093E-14	3189	160511_QHF_FH_JSI12i_3	158.76	139.97			0.94324	1.0025	19.692	29	2	Median	1.2201	1.0384	16.507	4	0	Median	0.89648	1.053	13.417	8	2	Median	0.94324	0.93038	22.285	9	0	Median	0.98724	1.0536	21.245	8	0	Median	9455800000	4763100000	4692700000	1514200000	653780000	860400000	1943300000	1003600000	939660000	3351900000	1707100000	1644800000	2646500000	1398600000	1247900000	55789	1436	52541	338618;338619;338620;338621;338622;338623;338624;338625;338626;338627;338628;338629;338630;338631;338632;338633;338634;338635;338636;338637;338638;338639;338640;338641;338642;338643;338644;338645;338646	456640;456641;456642;456643;456644;456645;456646;456647;456648;456649;456650;456651;456652;456653;456654;456655;456656;456657;456658;456659;456660;456661;456662;456663;456664;456665;456666;456667;456668;456669;456670;456671;456672;456673;456674;456675	456674			36	
VMQEQGTHPK	1	Oxidation (M)	1169.5499	0.54990688	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.61	1	11	3				3	3		4	4	6	7	4.9303	2.161	2;3	1.8955E-07	2208	160511_QHF_FH_JSI11i_2	120.99	97.917			1.0719	1.0625	17.15	21	1	Median	1.2521	1.0391	32.034	4	1	Median	0.81897	0.98646	7.9883	4	0	Median	1.0875	1.1082	13.921	6	0	Median	1.0444	1.1109	11.619	7	0	Median	2685500000	1301100000	1384400000	520670000	239440000	281230000	320600000	175030000	145580000	935880000	448550000	487330000	908320000	438050000	470270000	55790	1436	52541	338647;338648;338649;338650;338651;338652;338653;338654;338655;338656;338657;338658;338659;338660;338661;338662;338663;338664;338665;338666;338667	456676;456677;456678;456679;456680;456681;456682;456683;456684;456685;456686;456687;456688;456689;456690;456691;456692;456693;456694;456695;456696;456697	456686		1111	22	
VMQEQGTHPKFQK	2	Acetyl (K)	1598.7875	0.78751139	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.8	0.433								1	3		1	2	1	30.912	22.014	3	0.0029771	12677	160513_QHF_FH_JSI10Kac_6	49.627	42.497			0.41613	0.42911	64.998	4	0	Median	NaN	NaN	NaN	0	0	Median	1.1379	1.3045	NaN	1	0	Median	0.33327	0.3297	7.8134	2	0	Median	0.48861	0.52849	NaN	1	0	Median	87865000	56042000	31823000	0	0	0	15617000	7858100	7758800	65949000	44665000	21285000	6298400	3518800	2779700	55791	1436	52542	338668;338669;338670;338671	456698;456699	456699	1412		2	
VMQLALFQGIAK	1	Unmodified	1317.7479	0.74787841	3989	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7	6.38		2	2						2		1	1	4	87.878	84.506	2	6.2367E-09	42469	160513_QHF_FH_JSI11Kac_6	118.18	98.906			0.72764	0.72238	54.35	5	4	Median	NaN	NaN	NaN	0	0	Median	0.34341	0.40669	NaN	1	1	Median	1.362	1.3675	NaN	1	0	Median	0.72764	0.72238	45.629	3	3	Median	165210000	94107000	71099000	0	0	0	34051000	25358000	8693000	35621000	15723000	19898000	95533000	53025000	42508000	55792	3989	52543	338672;338673;338674;338675;338676;338677	456700;456701;456702;456703;456704;456705	456702			6	
VMQPLVQQPILPVVK	1	Unmodified	1688.0059	0.0058840064	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	3	1	87.262	86.749	2;3	0.00052359	79041	160511_QHF_FH_JSI11i_1	68.893	62.234			0.97212	1.0421	35.047	4	4	Median	NaN	NaN	NaN	0	0	Median	0.84794	0.95987	NaN	1	1	Median	0.85809	0.85175	40.144	2	2	Median	1.3754	1.4813	NaN	1	1	Median	66210000	37646000	28564000	0	0	0	20804000	13646000	7157500	32727000	18265000	14461000	12680000	5734800	6944800	55793	2956	52544	338678;338679;338680;338681;338682	456706;456707;456708;456709;456710	456707			5	
VMQQNLVYYQYHR	0	Unmodified	1740.8406	0.84060959	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	5.59			3					1	8	2	4	2	4	51.6	44.321	2;3	1.3107E-50	24341	160513_QHF_FH_JSI10Kac_6	241.23	225.86			1.0118	1.0235	17.284	12	2	Median	1.2097	1.0517	9.1619	2	0	Median	0.89132	1.0383	14.221	4	1	Median	1.121	1.0836	8.6986	2	0	Median	0.90658	0.94767	25.472	4	1	Median	2045700000	1059000000	986700000	333240000	159320000	173930000	1047400000	571920000	475510000	254750000	122620000	132130000	410320000	205180000	205130000	55794	561	52545	338683;338684;338685;338686;338687;338688;338689;338690;338691;338692;338693;338694	456711;456712;456713;456714;456715;456716;456717;456718;456719;456720;456721;456722;456723;456724;456725;456726;456727;456728;456729	456729			19	
VMQQNLVYYQYHR	0	Oxidation (M)	1756.8355	0.83552421	561	O75718	CRTAP	Cartilage-associated protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	47.06	37.899	2;3	1.9965E-25	20126	160513_QHF_FH_JSI9Kac_6	161.99	155.41			1.1051	1.1246	27.94	6	1	Median	1.3694	1.2034	10.459	2	0	Median	0.65983	0.78572	40.359	2	1	Median	1.1488	1.1532	NaN	1	0	Median	1.063	1.1317	NaN	1	0	Median	220860000	107310000	113550000	74626000	30918000	43709000	69789000	37562000	32227000	35515000	17993000	17522000	40934000	20837000	20097000	55795	561	52545	338695;338696;338697;338698;338699;338700	456730;456731;456732;456733;456734;456735;456736;456737;456738;456739;456740	456732		212	11	
VMQQQQQTTQQQLPQK	1	Unmodified	1940.9738	0.97380861	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	22.507	21.973	2;3	1.2604E-97	18737	160511_QHF_FH_JSI9i_1	309.66	285.67			1.0722	1.0261	13.158	8	0	Median	1.0713	0.87738	0.71144	2	0	Median	0.91544	1.0891	19.385	2	0	Median	1.1483	1.1194	4.0073	2	0	Median	0.99329	1.0399	10.17	2	0	Median	1597100000	834360000	762720000	340970000	146670000	194310000	374950000	224630000	150320000	421480000	230140000	191340000	459680000	232920000	226760000	55796	2676	52546	338701;338702;338703;338704;338705;338706;338707;338708	456741;456742;456743;456744;456745;456746;456747;456748;456749;456750;456751;456752;456753;456754;456755;456756;456757	456757			17	
VMQQQQQTTQQQLPQK	1	Oxidation (M)	1956.9687	0.96872323	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	2	1	20.956	19.04	2;3	3.9115E-06	19121	160511_QHF_FH_JSI10i_1	121.08	97.471			0.40033	0.59804	49.643	4	3	Linear	0.44029	0.35267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92869	0.90609	18.552	2	1	Median	0.44	0.45005	NaN	1	1	Median	139630000	74951000	64681000	40334000	19389000	20945000	11843000	11843000	0	18938000	9066100	9872100	68517000	34653000	33863000	55797	2676	52546	338709;338710;338711;338712;338713	456758;456759;456760;456761;456762	456761		2100	5	
VMQTDESNK	1	Unmodified	1050.4652	0.4651742	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1	0	3									1	1		1	6.186	5.7638	2	0.0013128	3484	160511_QHF_FH_JSI9i_1	69.598	58.888			1.3019	1.2755	9.864	2	0	Median	1.4508	1.1896	NaN	1	0	Median	1.1683	1.3677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110930000	58340000	52594000	53072000	24457000	28615000	57863000	33883000	23980000	0	0	0	0	0	0	55798	3653	52547	338714;338715;338716	456763;456764;456765	456764			3	
VMQVLNADAIVVK	1	Unmodified	1398.7905	0.7904715	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.08	5.78	8	6	4				2	2	2	6	6	7	5	73.714	70.68	2;3	1.8006E-30	61879	160511_QHF_FH_JSI12i_2	185.18	165.42			1.0681	1.0752	16.716	24	2	Median	1.3591	1.1205	20.877	6	1	Median	0.93041	1.0994	23.168	6	0	Median	1.0378	1.0101	8.4543	7	0	Median	1.031	1.0906	11.426	5	1	Median	2528000000	1129900000	1398100000	518940000	223830000	295110000	526330000	243610000	282720000	771070000	335190000	435880000	711670000	327310000	384360000	55799	3213	52548	338717;338718;338719;338720;338721;338722;338723;338724;338725;338726;338727;338728;338729;338730;338731;338732;338733;338734;338735;338736;338737;338738;338739;338740	456766;456767;456768;456769;456770;456771;456772;456773;456774;456775;456776;456777;456778;456779;456780;456781;456782;456783;456784;456785;456786;456787;456788;456789;456790;456791;456792;456793;456794;456795;456796	456773			31	
VMQVLNADAIVVK	1	Oxidation (M)	1414.7854	0.78538612	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0		By MS/MS		By MS/MS	14.3	0.471							2	1			1		2	70.941	60.289	2	0.0016639	32254	160513_QHF_FH_JSI10Kac_4	81.017	64.792			0.87867	0.98691	20.523	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81214	0.94688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1137	1.1991	21.691	2	0	Median	17978000	10052000	7925200	0	0	0	11060000	6446000	4613900	0	0	0	6917800	3606400	3311300	55800	3213	52548	338741;338742;338743	456797;456798	456797		2219	2	
VMRVEYHFLSPYVSPK	1	Unmodified	1951.0026	0.0025895425	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	72.666	64.151	3;4	1.8219E-05	35196	160513_QHF_FH_JSI10Kac_6	101.15	85.756			1.6182	1.5859	64.279	5	1	Median	0.74829	0.64306	NaN	1	0	Median	2.5989	3.0195	4.4936	2	0	Median	1.6182	1.5859	NaN	1	1	Median	1.3222	1.3823	NaN	1	0	Median	344150000	109790000	234360000	44833000	28986000	15847000	254370000	60645000	193720000	8121200	3018000	5103200	36824000	17142000	19681000	55801	793	52549	338744;338745;338746;338747;338748	456799;456800;456801;456802;456803;456804;456805;456806	456805			8	
VMSDFAINQEQK	1	Unmodified	1408.6657	0.66566492	4064	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	1		2	42.58	42.025	2	0.00022423	38372	160511_QHF_FH_JSI12i_1	94.465	84.512			1.1159	1.1776	58.689	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.36526	0.42507	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1316	1.1747	0.34962	2	1	Median	505760000	261740000	244020000	0	0	0	154880000	106260000	48626000	0	0	0	350870000	155480000	195390000	55802	4064	52550	338749;338750;338751;338752	456807;456808;456809;456810	456808			4	
VMSEFNNNFR	0	Unmodified	1256.5608	0.56080592	918	P08962	CD63	CD63 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.35	2	4	4					2	3	4	3	5	3	44.143	40.301	2	5.0647E-19	35340	160511_QHF_FH_JSI9i_2	176.4	159.62			1.0726	1.0423	14.163	15	2	Median	1.1923	0.97926	4.9209	4	0	Median	0.88468	1.0423	11.207	3	1	Median	1.0726	1.0474	19.376	5	1	Median	0.98308	1.1049	8.5261	3	0	Median	6840700000	3244000000	3596700000	1027700000	490280000	537390000	1673700000	877330000	796330000	2473100000	1064700000	1408400000	1666300000	811630000	854640000	55803	918	52551	338753;338754;338755;338756;338757;338758;338759;338760;338761;338762;338763;338764;338765;338766;338767	456811;456812;456813;456814;456815;456816;456817;456818;456819;456820;456821;456822;456823;456824;456825;456826;456827;456828;456829;456830;456831	456822			21	
VMSQEIQEQLHK	1	Unmodified	1468.7344	0.73441319	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	36.381	35.729	2;3	1.3877E-11	30442	160511_QHF_FH_JSI12i_3	149.38	130.92			0.84158	0.86842	70.26	10	5	Median	1.3774	1.1843	188.44	2	2	Median	0.74057	0.91941	15.194	2	0	Median	0.84625	0.86093	33.363	3	1	Median	1.2448	1.3548	33.438	3	2	Median	1417100000	745690000	671430000	204240000	120660000	83581000	345600000	173360000	172230000	630070000	339930000	290140000	237210000	111730000	125480000	55804	2517	52552	338768;338769;338770;338771;338772;338773;338774;338775;338776;338777	456832;456833;456834;456835;456836;456837;456838;456839;456840;456841;456842;456843;456844;456845	456843			13	
VMSQNFTNCHTK	1	Oxidation (M)	1481.6391	0.63913259	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	14.279	13.913	3	3.8621E-05	8066	160511_QHF_FH_JSI12i_3	84.352	77.448			0.94505	0.98853	33.159	7	1	Median	NaN	NaN	NaN	0	0	Median	1.0812	1.2409	33.494	3	1	Median	0.85867	0.80846	2.193	2	0	Median	0.92479	0.92628	9.1978	2	0	Median	535050000	283700000	251350000	0	0	0	120520000	48985000	71537000	230510000	132060000	98446000	184020000	102650000	81371000	55805	2381	52553	338778;338779;338780;338781;338782;338783;338784	456846;456847;456848;456849;456850;456851	456850		1938	6	
VMSQNFTNCHTK	1	Unmodified	1465.6442	0.64421797	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.48		6	9						4	5	5	5	4	18.6	16.244	2;3	1.5008E-11	13255	160511_QHF_FH_JSI11i_3	148.89	125.42			0.97833	1.0925	17.776	16	3	Median	1.2877	1.0821	20.111	4	1	Median	0.94315	1.1197	4.5449	5	0	Median	0.91414	0.8941	13.097	4	0	Median	1.1292	1.1699	26.905	3	2	Median	2498200000	1189400000	1308900000	200450000	94728000	105720000	728130000	390060000	338080000	986760000	432530000	554230000	582890000	272070000	310820000	55806	2381	52553	338785;338786;338787;338788;338789;338790;338791;338792;338793;338794;338795;338796;338797;338798;338799;338800;338801;338802;338803	456852;456853;456854;456855;456856;456857;456858;456859;456860;456861;456862;456863;456864;456865;456866;456867;456868;456869;456870;456871;456872;456873;456874;456875;456876;456877;456878;456879;456880	456853			29	
VMSQNFTNCHTKIR	1	Acetyl (K)	1776.84	0.83995767	2381	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		43.045	33.425	3	0.002756	18313	160513_QHF_FH_JSI11Kac_6	63.037	51.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5177100	5177100	0	0	0	0	0	0	0	5177100	5177100	0	0	0	0	55807	2381	52554	338804	456881	456881	2455		1	
VMTDESGK	1	Unmodified	865.38513	0.38513296	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	6.5462	6.1884	2	0.0055642	4047	160511_QHF_FH_JSI10i_1	65.252	37.998			1.3099	1.4357	20.881	5	0	Median	1.7317	1.4357	NaN	1	0	Median	1.0567	1.2852	32.345	2	0	Median	1.6359	1.6089	NaN	1	0	Median	1.0647	1.1332	NaN	1	0	Median	7545200000	3686000000	3859300000	1603200000	635160000	968080000	2197400000	1233600000	963830000	1577000000	602670000	974320000	2167600000	1214600000	953040000	55808	1009;4688	52555	338805;338806;338807;338808;338809	456882;456883;456884;456885;456886;456887;456888;456889	456886			8	
VMTDESGK	1	Oxidation (M)	881.38005	0.38004758	1009;4688	P11940;Q9H361	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.31	5.74	7				3	3				2	3	4	4	5.2519	1.7301	2	0.01155	2438	160511_QHF_FH_JSI12i_1	58.815	49.065			0.95961	1.0164	12.592	13	1	Median	1.4395	1.1706	11.136	2	0	Median	0.86278	1.0483	3.8514	3	0	Plateau	1.0519	1.0125	7.8268	4	0	Median	0.85907	0.91197	14.555	4	1	Median	1946600000	933540000	1013100000	369960000	137130000	232830000	287510000	151600000	135910000	611390000	287300000	324100000	677790000	357510000	320270000	55809	1009;4688	52555	338810;338811;338812;338813;338814;338815;338816;338817;338818;338819;338820;338821;338822	456890;456891;456892;456893;456894;456895;456896;456897;456898;456899	456892		600	10	
VMTIAPGLFGTPLLTSLPEK	1	Unmodified	2084.1591	0.15914976	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.94	3.24	3	8	6						1	3	5	5	5	101.69	101.11	2;3	5.0373E-83	88734	160511_QHF_FH_JSI12i_3	249.41	228.95			0.95297	1.0178	34.481	17	3	Median	1.0112	0.84154	48.694	3	1	Plateau	0.89794	1.0778	7.7802	5	0	Median	0.96909	0.98023	15.424	5	1	Median	1.1926	1.2631	33.875	4	1	Median	14230000000	6879500000	7350300000	2416200000	1258300000	1157900000	3200800000	1633400000	1567400000	4233300000	1998400000	2234900000	4379400000	1989400000	2390000000	55810	4304	52556	338823;338824;338825;338826;338827;338828;338829;338830;338831;338832;338833;338834;338835;338836;338837;338838;338839;338840	456900;456901;456902;456903;456904;456905;456906;456907;456908;456909;456910;456911;456912;456913;456914;456915;456916;456917;456918;456919;456920;456921;456922;456923;456924;456925;456926;456927;456928;456929;456930	456929			31	
VMTIAPGLFGTPLLTSLPEK	1	Oxidation (M)	2100.1541	0.15406439	4304	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	yes	yes	0	0	1	0		By MS/MS			3	0			1								1			101.6	101.45	3	7.3926E-05	84104	160511_QHF_FH_JSI10i_3	69.361	61.272			0.6105	0.70426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6105	0.70426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67879000	49097000	18782000	0	0	0	67879000	49097000	18782000	0	0	0	0	0	0	55811	4304	52556	338841	456931	456931		2438	1	
VMTIPYQPMPASSPVICAGGQDR	0	Unmodified	2474.1756	0.17562124	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	81.08	80.585	2;3	6.5993E-38	73417	160511_QHF_FH_JSI11i_1	192.4	185.17			1.1215	1.1276	14.25	9	0	Median	1.3381	1.1005	12.138	2	0	Median	1.0202	1.2426	5.7655	3	0	Plateau	1.1185	1.0843	0.64042	2	0	Median	1.4365	1.5049	2.0329	2	0	Median	1624400000	703260000	921140000	237250000	99660000	137590000	372220000	178980000	193240000	620690000	292680000	328010000	394240000	131940000	262300000	55812	2656	52557	338842;338843;338844;338845;338846;338847;338848;338849;338850	456932;456933;456934;456935;456936;456937;456938;456939;456940;456941;456942;456943;456944;456945;456946;456947	456933			16	
VMTIPYQPMPASSPVICAGGQDR	0	Oxidation (M)	2490.1705	0.17053586	2656	Q15365	PCBP1	Poly(rC)-binding protein 1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		1	0	2										1	1		72.449	72.175	3	5.8448E-07	65711	160511_QHF_FH_JSI11i_1	76.417	71.16			0.86469	0.92	72.724	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3328	1.5386	NaN	1	1	Median	0.56097	0.55012	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	79862000	45330000	34532000	0	0	0	35761000	14143000	21618000	44102000	31187000	12914000	0	0	0	55813	2656	52557	338851;338852	456948;456949	456948		2079	2	
VMTSGTGAPAK	1	Unmodified	1018.5117	0.51173046	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	10.976	10.726	2	0.00040365	8631	160511_QHF_FH_JSI12i_1	71.614	56.174			0.66581	0.78603	48.306	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.66581	0.79141	NaN	1	0	Median	0.33435	0.32979	NaN	1	1	Median	0.70075	0.72791	NaN	1	0	Median	476400000	277510000	198890000	0	0	0	179420000	103010000	76409000	128740000	80242000	48495000	168250000	94264000	73982000	55814	1743	52558	338853;338854;338855	456950;456951;456952;456953;456954;456955	456952			6	
VMTSGTGAPAKIITAVPK	2	Acetyl (K);Oxidation (M)	1798.9863	0.98627078	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	1	1		By MS/MS	By MS/MS	By MS/MS	13	0.816					3	3	3				5	1	3	73.76	64.478	3	0.00029211	28332	160513_QHF_FH_JSI12Kac_2	70.942	53.453			1.0498	1.0648	42.657	7	0	Median	NaN	NaN	NaN	0	0	Median	1.0734	1.2625	63.048	3	0	Median	1.0667	1.0393	NaN	1	0	Median	0.98746	1.0648	35.727	3	0	Median	39790000	21678000	18112000	0	0	0	11220000	6118400	5101900	5768300	2795700	2972500	22801000	12764000	10038000	55815	1743	52559	338856;338857;338858;338859;338860;338861;338862;338863;338864	456956;456957;456958;456959;456960;456961;456962;456963;456964;456965	456965	1759	1430	10	
VMTSGTGAPAKIITAVPK	2	Acetyl (K)	1782.9914	0.99135615	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	1	2	76.879	66.821	3	0.0099914	34051	160513_QHF_FH_JSI12Kac_3	50.178	28.337			1.0018	1.0362	40.193	4	1	Median	NaN	NaN	NaN	0	0	Median	0.65633	0.78435	NaN	1	0	Median	1.0467	1.03	NaN	1	0	Median	1.3412	1.4506	46.736	2	1	Median	14910000	6957800	7952300	0	0	0	4297100	2081200	2215900	4411000	2039200	2371800	6202000	2837300	3364600	55816	1743	52559	338865;338866;338867;338868	456966;456967;456968;456969	456968	1759		4	
VMTVNYNTHGELGEGAR	0	Unmodified	1846.8632	0.86319553	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	38.376	38.045	3	6.0269E-06	33358	160511_QHF_FH_JSI11i_3	90.385	79.33			0.87732	0.88388	21.344	4	4	Median	NaN	NaN	NaN	0	0	Median	1.0244	1.2228	NaN	1	1	Median	0.80052	0.74931	NaN	1	1	Median	0.87732	0.88388	10.2	2	2	Median	316180000	156240000	159930000	0	0	0	63892000	34708000	29184000	79322000	41368000	37954000	172960000	80168000	92795000	55817	2105	52560	338869;338870;338871;338872	456970;456971;456972;456973	456970			4	
VMTVNYNTHGELGEGARK	1	Unmodified	1974.9582	0.95815855	2105	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			32.983	31.574	3;4	1.5575E-07	25740	160511_QHF_FH_JSI9i_3	95.205	88.635			1.1218	1.0906	4.6506	4	0	Median	1.3697	1.112	1.0728	2	0	Median	0.91124	1.0425	4.689	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	302800000	144380000	158420000	132310000	53782000	78529000	170480000	90595000	79890000	0	0	0	0	0	0	55818	2105	52561	338873;338874;338875;338876	456974;456975;456976;456977;456978;456979;456980	456980			7	
VMTVSFHK	1	Unmodified	947.48987	0.48987281	3882;2438;284	Q13547;Q92769;O15379	HDAC1;HDAC2;HDAC3	Histone deacetylase 1;Histone deacetylase 2;Histone deacetylase 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.09	6.5		4	9					1	8	6	6	5	5	33.359	29.127	2;3	0.00022047	24605	160511_QHF_FH_JSI11i_3	88.948	78.075			1.1722	1.0351	48.84	22	1	Median	1.224	0.99769	29.611	6	0	Median	0.81398	0.98861	84.441	6	1	Median	1.1727	1.1549	10.934	5	0	Median	1.0851	1.0906	47.445	5	0	Median	9775400000	4151400000	5623900000	2066700000	789140000	1277600000	2120200000	1010200000	1110000000	2112300000	911050000	1201200000	3476200000	1441000000	2035200000	55819	2438;3882;284	52562	338877;338878;338879;338880;338881;338882;338883;338884;338885;338886;338887;338888;338889;338890;338891;338892;338893;338894;338895;338896;338897;338898	456981;456982;456983;456984;456985;456986;456987;456988;456989;456990;456991;456992;456993;456994;456995;456996;456997;456998;456999;457000;457001;457002;457003;457004;457005;457006;457007;457008;457009	456983			29	
VMTVSFHK	1	Oxidation (M)	963.48479	0.48478743	3882;2438;284	Q13547;Q92769;O15379	HDAC1;HDAC2;HDAC3	Histone deacetylase 1;Histone deacetylase 2;Histone deacetylase 3	no	no	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.25	6.56		2	5						5	4	4	1	3	25.78	21.59	3	0.0015124	11274	160513_QHF_FH_JSI10Kac_6	71.692	64.472			0.91632	1.0451	40.509	11	0	Median	0.87851	0.70185	54.766	3	0	Plateau	0.91481	1.054	10.78	4	0	Median	0.79834	0.78178	NaN	1	0	Median	2.17	2.2184	53.507	3	0	Plateau	582030000	244140000	337890000	87310000	39336000	47974000	106950000	60538000	46413000	12438000	6385800	6051900	375330000	137880000	237450000	55820	2438;3882;284	52562	338899;338900;338901;338902;338903;338904;338905;338906;338907;338908;338909;338910	457010;457011;457012;457013;457014;457015	457015		112	5	
VMVELLGSYTEDNASQAR	0	Unmodified	1981.9415	0.94150543	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		5								1		1	3	72.883	71.819	2;3	5.1908E-13	61929	160511_QHF_FH_JSI12i_2	180.84	165.47			0.72965	0.83421	33.989	5	3	Median	0.472	0.41325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65167	0.65281	NaN	1	0	Median	0.74283	0.83805	9.611	3	2	Median	240020000	121880000	118140000	12485000	8759400	3725500	0	0	0	25346000	14595000	10751000	202190000	98528000	103670000	55821	3222	52563	338911;338912;338913;338914;338915	457016;457017;457018;457019;457020;457021;457022	457019			7	
VMVGVIILYDHVHPVGAFAK	1	Unmodified	2164.1867	0.18670192	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.92	77.659	4	1.6437E-06	42997	160513_QHF_FH_JSI11Kac_6	78.661	63.069			1.0699	1.1138	22.81	4	0	Median	0.95647	0.80873	NaN	1	0	Median	0.93947	1.1004	NaN	1	0	Median	1.1967	1.1273	NaN	1	0	Median	1.3425	1.4087	NaN	1	0	Median	479830000	214260000	265570000	162680000	87460000	75223000	118090000	58763000	59331000	151240000	56125000	95112000	47820000	11917000	35903000	55822	5015	52564	338916;338917;338918;338919	457023;457024;457025;457026;457027;457028;457029	457024			7	
VMVLDFVTPTPLGTR	0	Unmodified	1644.8909	0.89091383	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		6	8						8	5	4	6	7	97.135	94.164	2;3	1.3161E-30	88143	160511_QHF_FH_JSI11i_2	196.24	179.57			1.0127	1.0714	16.952	21	6	Median	1.4395	1.2095	10.343	5	2	Median	0.87362	1.0189	15.143	4	0	Median	1.0327	0.9956	13.012	5	2	Median	0.94434	1.0515	20.208	7	2	Median	3513000000	1806700000	1706300000	604650000	264300000	340350000	664580000	345540000	319040000	1053600000	551650000	501970000	1190200000	645180000	544980000	55823	2778	52565	338920;338921;338922;338923;338924;338925;338926;338927;338928;338929;338930;338931;338932;338933;338934;338935;338936;338937;338938;338939;338940;338941	457030;457031;457032;457033;457034;457035;457036;457037;457038;457039;457040;457041;457042;457043;457044;457045;457046;457047;457048;457049;457050;457051;457052;457053;457054;457055;457056;457057;457058;457059;457060;457061;457062;457063;457064	457052			35	
VMVLDFVTPTPLGTR	0	Oxidation (M)	1660.8858	0.88582845	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	92.152	91.613	2	0.0010781	80616	160511_QHF_FH_JSI11i_2	101.93	92.974			1.1168	1.0585	23.32	3	3	Median	1.1993	1.0585	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77132	0.78367	NaN	1	1	Median	1.1168	1.2403	NaN	1	1	Median	52393000	29318000	23075000	16541000	7597500	8943600	0	0	0	20180000	13071000	7108400	15673000	8649500	7023200	55824	2778	52565	338942;338943;338944	457065;457066;457067	457067		2140	3	
VMVQINTSGEESK	1	Unmodified	1420.6868	0.68679429	621	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	38.468	38.06	2	2.6453E-05	34210	160511_QHF_FH_JSI11i_1	118.28	104.93			0.79836	0.86705	24.914	4	4	Median	NaN	NaN	NaN	0	0	Median	0.69748	0.80298	30.422	2	2	Median	1.1293	1.1148	NaN	1	1	Median	0.74928	0.75502	NaN	1	1	Median	115920000	60549000	55368000	0	0	0	60835000	33111000	27724000	27923000	10981000	16942000	27159000	16457000	10702000	55825	621	52566	338945;338946;338947;338948	457068;457069;457070;457071	457068			4	
VMVQPINLIFR	0	Oxidation (M)	1344.7588	0.75877744	1997	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	5.75		1	4					1	1	2	2	1	2	88.51	85.265	2	1.0449E-12	74121	160511_QHF_FH_JSI10i_3	143.61	135.57			0.95806	0.98088	18.46	7	1	Median	1.106	0.9044	6.8281	2	0	Median	0.66048	0.78237	31.979	2	1	Median	1.1777	1.1067	NaN	1	0	Median	0.93776	0.98886	0.0068455	2	0	Median	1008800000	533800000	475010000	167290000	85501000	81787000	239310000	136520000	102780000	142680000	69213000	73469000	459530000	242570000	216970000	55826	1997	52567	338949;338950;338951;338952;338953;338954;338955	457072;457073;457074;457075;457076;457077;457078;457079;457080;457081;457082;457083;457084	457075		1662	13	
VMVQPINLIFR	0	Unmodified	1328.7639	0.76386282	1997	P62304	SNRPE	Small nuclear ribonucleoprotein E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.67	2	4	5						3	3	4	4	3	96.294	94.208	2	1.6007E-23	84789	160511_QHF_FH_JSI12i_3	179.73	156.99			0.97022	0.98473	10.665	14	2	Median	1.1426	0.95784	13.078	3	0	Median	0.80735	0.93475	8.0793	4	2	Median	1.1045	1.0608	2.8147	4	0	Median	1.0095	1.017	12.099	3	0	Plateau	6738600000	3385300000	3353300000	1301800000	610970000	690800000	1764200000	981830000	782340000	1593700000	775250000	818440000	2079000000	1017300000	1061700000	55827	1997	52567	338956;338957;338958;338959;338960;338961;338962;338963;338964;338965;338966;338967;338968;338969	457085;457086;457087;457088;457089;457090;457091;457092;457093;457094;457095;457096;457097;457098;457099;457100;457101;457102;457103;457104;457105;457106;457107;457108;457109;457110;457111;457112;457113	457111			29	
VMVTDADR	0	Unmodified	905.42767	0.42766648	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	15.719	15.448	2	0.0078412	12969	160511_QHF_FH_JSI10i_1	58.286	45.297			0.82138	1.0387	12.108	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81782	0.96348	NaN	1	0	Median	1.1352	1.1198	NaN	1	0	Median	0.82138	0.88119	NaN	1	1	Median	1180400000	581550000	598820000	0	0	0	399270000	200140000	199130000	404290000	193370000	210920000	376810000	188050000	188770000	55828	2087	52568	338970;338971;338972	457114;457115;457116	457116			3	
VMVTNVTSLLK	1	Unmodified	1203.6897	0.68969482	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.07	6.54	2	3	4					1	4	3	4	5	2	77.59	74.059	2	2.8389E-09	38658	160513_QHF_FH_JSI11Kac_6	123.79	116.15			0.98909	1.0336	17.133	14	2	Median	1.0284	0.88021	9.5787	3	0	Plateau	0.87133	1.0472	17.544	4	1	Median	0.87363	0.88242	18.35	5	1	Median	1.1333	1.1952	21.088	2	0	Median	1649800000	760120000	889710000	339090000	156470000	182630000	367180000	204810000	162370000	622060000	269690000	352360000	321490000	129150000	192350000	55829	5616;5628	52569	338973;338974;338975;338976;338977;338978;338979;338980;338981;338982;338983;338984;338985;338986	457117;457118;457119;457120;457121;457122;457123;457124;457125;457126;457127;457128;457129;457130;457131;457132;457133;457134;457135;457136	457120			20	
VMVTNVTSLLK	1	Oxidation (M)	1219.6846	0.68460945	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	0	0	1	0			By MS/MS		15	0								1				1		77.269	66.633	2	0.046015	35444	160513_QHF_FH_JSI11Kac_5	35.224	29.914			0.95242	0.94037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95242	0.94037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5578100	2846100	2732000	0	0	0	0	0	0	5578100	2846100	2732000	0	0	0	55830	5616;5628	52569	338987	457137	457137			1	
VMVTNVTSLLKTVK	2	Acetyl (K)	1573.9113	0.91131492	5616;5628	Q9Y490;Q9Y4G6	TLN1;TLN2	Talin-1;Talin-2	no	no	1	0	0	1			By MS/MS		16	0									1			1		88.208	78.879	2	0.00042589	44028	160513_QHF_FH_JSI11Kac_6	111.12	87.136			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18435000	18435000	0	0	0	0	0	0	0	18435000	18435000	0	0	0	0	55831	5616;5628	52570	338988	457138	457138	3502		1	
VMVVGPTDVGK	1	Unmodified	1100.59	0.58998078	3917	Q92989	CLP1	Polyribonucleotide 5'-hydroxyl-kinase Clp1	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	44.348	43.817	2	0.0257	39942	160511_QHF_FH_JSI12i_1	40.725	31.862			0.55446	0.59829	33.962	2	0	Median	NaN	NaN	NaN	0	0	Median	0.4168	0.47056	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73758	0.76069	NaN	1	0	Median	67150000	39459000	27691000	0	0	0	32316000	21585000	10731000	0	0	0	34835000	17875000	16960000	55832	3917	52571	338989;338990	457139	457139			1	
VMVVLGPQTGR	0	Unmodified	1155.6434	0.64341333	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	49.411	48.768	2	0.00036171	42943	160511_QHF_FH_JSI11i_3	73.573	63.485			1.38	0.80864	37.882	5	0	Linear	0.92254	0.80864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94218	0.91789	57.838	2	0	Median	0.82338	0.87496	47.829	2	0	Median	727690000	371780000	355910000	132620000	63471000	69145000	0	0	0	318290000	158100000	160190000	276790000	150210000	126580000	55833	3906	52572	338991;338992;338993;338994;338995	457140;457141;457142;457143	457140			3	
VMYEKEAK	2	Acetyl (K)	1038.5056	0.50558245	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		29.578	21.144	2	0.0014627	13312	160513_QHF_FH_JSI11Kac_4	103.56	84.832			0.51915	0.51351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51915	0.51351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	26068000	17926000	8141800	0	0	0	0	0	0	26068000	17926000	8141800	0	0	0	55834	505	52573	338996	457144;457145	457145	254		2	
VMYEKEAK	2	Acetyl (K);Oxidation (M)	1054.5005	0.50049707	505	O75347	TBCA	Tubulin-specific chaperone A	yes	yes	1	0	1	1				By MS/MS	13	0						1							1	21.949	14.891	2	0.031935	9423	160513_QHF_FH_JSI12Kac_3	45.68	33.911			0.85633	0.9192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85633	0.9192	NaN	1	0	Median	6116400	3064000	3052400	0	0	0	0	0	0	0	0	0	6116400	3064000	3052400	55835	505	52573	338997	457146;457147	457146	254		2	
VMYGSYSYMWSFEK	1	Unmodified	1776.7528	0.75276537	2935	Q5T0W9	FAM83B	Protein FAM83B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	83.408	75.166	2	3.2729E-56	42602	160513_QHF_FH_JSI10Kac_6	215.46	206.46			1.081	1.0458	30.026	4	1	Median	1.1589	0.9916	NaN	1	1	Median	0.51369	0.59474	NaN	1	0	Median	1.1236	1.1029	NaN	1	0	Median	1.0401	1.1287	NaN	1	0	Median	151920000	90702000	61219000	22107000	13475000	8632400	81722000	57328000	24394000	33053000	13731000	19322000	15039000	6168200	8870500	55836	2935	52574	338998;338999;339000;339001	457148;457149;457150;457151;457152;457153	457152			6	
VMYMGEEHLFSVEQITAMLLTK	1	Unmodified	2569.263	0.26303926	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	97.567	89.147	3	2.4801E-89	48374	160513_QHF_FH_JSI12Kac_6	222.72	208.41			0.98093	0.79181	15.692	4	0	Linear	0.99781	0.86997	NaN	1	0	Median	0.66721	0.78716	NaN	1	0	Median	1.1911	1.1177	NaN	1	0	Median	0.96433	1.0184	NaN	1	0	Median	1120100000	574880000	545260000	298340000	144900000	153440000	354020000	200870000	153160000	203260000	95801000	107450000	264520000	133310000	131200000	55837	3852	52575	339002;339003;339004;339005	457154;457155;457156;457157;457158;457159;457160	457157			7	
VMYTPMAPGNYLISVK	1	Unmodified	1782.9048	0.90484933	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.67	3	8	3						2	2	4	5	5	87.501	85.88	2;3	2.0159E-16	41570	160513_QHF_FH_JSI11Kac_6	142.91	100.17			0.90854	0.97979	25.23	16	1	Median	1.175	1.0065	2.7223	2	0	Median	0.79407	0.94197	21.062	4	1	Median	0.98176	0.94952	15.833	5	0	Median	0.9206	1.0224	40.145	5	0	Median	982270000	504850000	477420000	183010000	83143000	99871000	212780000	121510000	91272000	313050000	161080000	151970000	273420000	139110000	134310000	55838	512	52576	339006;339007;339008;339009;339010;339011;339012;339013;339014;339015;339016;339017;339018;339019;339020;339021	457161;457162;457163;457164;457165;457166;457167;457168;457169;457170;457171;457172;457173;457174;457175;457176;457177;457178;457179;457180;457181;457182;457183;457184;457185;457186;457187;457188;457189;457190;457191;457192;457193;457194	457175			33	
VMYTPMAPGNYLISVK	1	Oxidation (M)	1798.8998	0.89976395	512	O75369	FLNB	Filamin-B	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		3										2	1	81.525	80.372	2	0.00079512	69470	160511_QHF_FH_JSI12i_2	67.022	32.135			0.78147	0.85392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78147	0.85392	NaN	1	0	Median	18205000	9945500	8259500	0	0	0	0	0	0	0	0	0	18205000	9945500	8259500	55839	512	52576	339022;339023;339024	457195;457196;457197	457195		189;190	3	
VNAEGSVDSVFSQVCTHLDALK	1	Unmodified	2375.1427	0.14272443	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	98.729	98.596	3	2.8507E-29	84999	160511_QHF_FH_JSI12i_2	177.87	169.58			1.0534	1.2382	27.755	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0347	1.2691	NaN	1	0	Median	0.85994	0.84253	NaN	1	0	Median	1.351	1.4137	22.229	2	1	Median	278780000	142320000	136460000	0	0	0	39793000	19144000	20649000	81349000	46685000	34663000	157640000	76491000	81145000	55840	776	52577	339025;339026;339027;339028	457198;457199;457200;457201;457202	457199			5	
VNAELQAR	0	Unmodified	899.48248	0.48247924	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	2		1	15.402	14.808	2	0.042344	12328	160511_QHF_FH_JSI10i_1	38.962	20.977			0.69901	0.78686	4.7016	4	0	Median	0.96044	0.77944	NaN	1	0	Median	0.68178	0.81602	3.8084	2	0	Median	NaN	NaN	NaN	0	0	Median	0.70562	0.74858	NaN	1	0	Median	1435700000	823490000	612250000	393250000	195740000	197510000	613810000	373600000	240210000	0	0	0	428670000	254150000	174520000	55841	736	52578	339029;339030;339031;339032	457203	457203			1	
VNAGALSAHRYFR	0	Unmodified	1460.7637	0.7636799	4595	Q9GZN1	ACTR6	Actin-related protein 6	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		93.409	92.961	3	0.058527	81725	160511_QHF_FH_JSI11i_2	20.663	8.6868			0.72401	0.71317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72401	0.71317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12426000	5084200	7342200	0	0	0	0	0	0	12426000	5084200	7342200	0	0	0	55842	4595	52579	339033	457204	457204			1	
VNAIEHVIIPR	0	Unmodified	1259.735	0.73500553	5665	Q9Y5K8	ATP6V1D	V-type proton ATPase subunit D	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	49.357	49.238	3	5.9476E-05	42108	160511_QHF_FH_JSI12i_3	78.692	74.164			1.1314	1.1156	0.31069	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1721	1.1131	NaN	1	0	Median	1.0922	1.118	NaN	1	0	Median	132140000	61658000	70485000	0	0	0	0	0	0	65185000	32609000	32576000	66959000	29050000	37910000	55843	5665	52580	339034;339035	457205;457206	457206			2	
VNAIPFTYEQLDVLK	1	Unmodified	1748.9349	0.93488713	2404	Q13421	MSLN	Mesothelin;Megakaryocyte-potentiating factor;Mesothelin, cleaved form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	98.591	98.455	2	7.7516E-05	87170	160511_QHF_FH_JSI10i_2	113.65	98.109			0.88237	0.96933	13.181	6	0	Median	1.116	0.98766	NaN	1	0	Median	0.69304	0.82878	19.778	2	0	Median	0.97823	0.97244	10.145	2	0	Median	0.88959	0.98576	NaN	1	0	Median	197680000	96694000	100990000	32835000	12336000	20499000	74250000	41056000	33194000	56674000	24884000	31789000	33925000	18417000	15508000	55844	2404	52581	339036;339037;339038;339039;339040;339041	457207;457208;457209;457210;457211;457212;457213;457214	457214			8	
VNAMTFTFDNVLPGK	1	Unmodified	1652.8232	0.82322819	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	3	2	91.98	91.468	2;3	1.5843E-06	80432	160511_QHF_FH_JSI11i_2	150.21	124.28			1.0192	1.0958	18.631	8	4	Median	1.1736	1.0024	25.773	2	1	Median	0.88532	1.091	24.02	2	1	Median	1.1121	1.1326	17.836	2	1	Median	1.0516	1.1708	24.54	2	1	Median	334190000	164420000	169770000	56828000	24075000	32752000	86801000	45235000	41566000	103300000	55647000	47650000	87265000	39464000	47801000	55845	2638;2895	52582	339042;339043;339044;339045;339046;339047;339048;339049;339050	457215;457216;457217;457218;457219;457220;457221;457222;457223;457224;457225;457226	457223			12	
VNAQAAAYEYMAAYIENAK	1	Unmodified	2089.9779	0.97789093	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	1	3	4	99.527	99.432	2;3	1.1188E-06	86968	160511_QHF_FH_JSI9i_2	95.814	86.768			1.0622	1.0173	15.402	8	2	Median	1.2424	1.0339	NaN	1	0	Median	0.84421	1.0253	NaN	1	0	Median	1.0133	0.98271	18.717	3	1	Plateau	0.85687	0.90442	20.837	3	1	Plateau	236940000	112880000	124070000	35260000	14799000	20460000	43406000	22739000	20666000	102510000	44180000	58335000	55765000	31159000	24605000	55846	3905	52583	339051;339052;339053;339054;339055;339056;339057;339058;339059	457227;457228;457229;457230;457231;457232;457233;457234;457235;457236;457237;457238;457239	457233			12	
VNASASSLK	1	Unmodified	875.47125	0.47124585	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.41	5.34	4	4	4			2	3			4	4	5	4	15.483	12.583	2	0.00056389	10882	160511_QHF_FH_JSI9i_1	78.334	57.034			0.94596	0.93188	26.712	16	3	Plateau	1.2305	0.91488	9.1435	4	0	Linear	0.89198	1.061	6.4968	3	0	Plateau	1.2576	1.1684	31.916	5	2	Median	0.65918	0.7129	43.089	4	1	Linear	9018500000	4499400000	4519100000	1940500000	809170000	1131300000	2249200000	1187000000	1062200000	2653800000	1397800000	1255900000	2175100000	1105500000	1069600000	55847	2751	52584	339060;339061;339062;339063;339064;339065;339066;339067;339068;339069;339070;339071;339072;339073;339074;339075;339076	457240;457241;457242;457243;457244;457245;457246;457247;457248;457249;457250;457251;457252;457253;457254;457255;457256;457257;457258;457259;457260;457261;457262;457263;457264	457255			25	
VNASASSLKK	2	Unmodified	1003.5662	0.56620887	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	10.793	10.436	2;3	0.0020398	7811	160511_QHF_FH_JSI12i_3	62.463	37.54			0.78985	0.85499	33.953	7	1	Median	1.9448	1.5518	18.543	2	1	Median	0.68702	0.79848	9.671	2	0	Median	1.2365	1.1526	NaN	1	0	Median	0.75936	0.76825	4.0017	2	0	Median	914690000	499680000	415000000	206390000	83752000	122640000	256360000	154190000	102170000	110970000	58360000	52606000	340970000	203370000	137600000	55848	2751	52585	339077;339078;339079;339080;339081;339082;339083	457265;457266;457267;457268;457269;457270;457271;457272	457272			8	
VNATGPQFVSGVIVK	1	Unmodified	1514.8457	0.84567819	2831	Q4G0J3	LARP7	La-related protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	66.65	65.942	2	1.2093E-05	58418	160511_QHF_FH_JSI10i_2	85.845	71.155			1.3717	1.2407	12.305	5	0	Median	1.4855	1.2407	NaN	1	0	Median	1.0566	1.2226	NaN	1	0	Median	1.4864	1.4421	13.627	2	0	Median	1.0463	1.152	NaN	1	0	Median	175430000	79162000	96270000	25200000	10818000	14382000	38543000	19084000	19458000	78113000	32496000	45616000	33576000	16763000	16813000	55849	2831	52586	339084;339085;339086;339087;339088;339089;339090	457273;457274;457275;457276;457277;457278;457279	457279			7	
VNATVPSNMMSVNGQAK	1	Unmodified	1746.8393	0.83928896	4700	Q9H3P7	ACBD3	Golgi resident protein GCP60	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	50.141	49.64	2	1.2776E-32	44586	160511_QHF_FH_JSI10i_1	151.78	129.25			1.023	1.2439	27.052	3	2	Median	NaN	NaN	NaN	0	0	Median	1.023	1.2439	NaN	1	1	Median	1.7806	1.7277	NaN	1	1	Median	0.98121	1.0103	NaN	1	0	Median	218670000	88607000	130060000	0	0	0	65635000	29891000	35744000	80904000	29668000	51236000	72128000	29048000	43080000	55850	4700	52587	339091;339092;339093;339094	457280;457281;457282;457283;457284	457284			5	
VNAVFEWHITK	1	Unmodified	1342.7034	0.70337105	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.74		4	4						7	4	4	3	4	67.049	62.807	2;3	6.7808E-06	32948	160513_QHF_FH_JSI12Kac_6	100.19	84.8			1.0039	1.038	11.776	14	0	Median	1.141	0.83923	13.319	3	0	Plateau	0.86413	1.0182	5.8984	4	0	Median	1.1382	1.0887	5.8197	3	0	Plateau	1.0747	1.1494	13.358	4	0	Median	1838600000	875100000	963520000	269830000	134100000	135720000	445400000	218880000	226530000	434270000	194840000	239420000	689130000	327280000	361850000	55851	1747	52588	339095;339096;339097;339098;339099;339100;339101;339102;339103;339104;339105;339106;339107;339108;339109	457285;457286;457287;457288;457289;457290;457291;457292;457293;457294;457295;457296;457297;457298;457299;457300;457301;457302;457303;457304;457305;457306;457307;457308;457309	457305			25	
VNAVNPTVVMTSMGQATWSDPHK	1	Unmodified	2469.1781	0.17806408	3278	Q7Z4W1	DCXR	L-xylulose reductase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	80.874	80.648	3	1.5058E-08	70054	160511_QHF_FH_JSI12i_3	82.267	67.497			1.3357	1.315	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3357	1.315	NaN	1	0	Median	27573000	13578000	13995000	0	0	0	0	0	0	0	0	0	27573000	13578000	13995000	55852	3278	52589	339110	457310	457310			1	
VNAVPRPIPEK	1	Unmodified	1218.7085	0.70845643	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							3	3	2	1	28.244	27.42	2;3	0.00010444	22753	160511_QHF_FH_JSI10i_3	68.069	51.043			0.89285	0.93863	31.49	9	0	Median	1.5876	1.3129	11.532	3	0	Median	0.81618	0.93863	36.595	3	0	Median	0.83152	0.76966	6.6783	2	0	Median	0.67003	0.67138	NaN	1	0	Median	1474100000	693990000	780120000	506480000	182690000	323790000	513770000	265950000	247820000	363240000	192050000	171190000	90615000	53299000	37316000	55853	4874	52590	339111;339112;339113;339114;339115;339116;339117;339118;339119	457311;457312;457313;457314;457315;457316;457317;457318;457319;457320;457321;457322	457315			12	
VNCLDKFWHK	2	Acetyl (K)	1387.6707	0.67069072	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		69.301	59.788	3	0.00060622	32411	160513_QHF_FH_JSI11Kac_6	74.962	64.015			0.24531	0.24334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24531	0.24334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34160000	26541000	7619600	0	0	0	0	0	0	34160000	26541000	7619600	0	0	0	55854	2579	52591	339120	457323	457323	2552		1	
VNCSFYFK	1	Unmodified	1063.4797	0.47970205	956	P0DN76;Q01081;Q8WU68	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	yes	no	0	0	0	0			By MS/MS	By MS/MS	11.3	6.6		1							2			2	1	45.983	45.48	2	0.026731	39017	160511_QHF_FH_JSI11i_2	51.854	36.192			0.86508	0.87376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86508	0.87376	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	170050000	85468000	84587000	0	0	0	0	0	0	170050000	85468000	84587000	0	0	0	55855	956	52592	339121;339122;339123	457324;457325;457326	457325			3	
VNDAMNMGHTAK	1	Unmodified	1287.57	0.56999039	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	14.088	13.551	3	0.00012489	10689	160511_QHF_FH_JSI11i_2	69.795	60.607			0.90784	0.96121	55.097	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66233	0.65106	NaN	1	0	Median	1.2444	1.4191	NaN	1	0	Median	113520000	65365000	48151000	0	0	0	0	0	0	65143000	45390000	19754000	48372000	19975000	28397000	55856	493	52593	339124;339125;339126	457327;457328	457327			2	
VNDDVGIDWTNENDR	0	Unmodified	1760.7602	0.76017024	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			53.484	53.08	2	0.011219	47809	160511_QHF_FH_JSI10i_1	73.881	64.559			1.2883	1.4645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2883	1.4645	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24119000	12438000	11681000	0	0	0	24119000	12438000	11681000	0	0	0	0	0	0	55857	2535	52594	339127	457329	457329			1	
VNDFLAEIFKK	2	Unmodified	1322.7234	0.72343779	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							3	3	2	1	88.377	87.82	3	6.8665E-07	78188	160511_QHF_FH_JSI11i_3	112.13	87.834			1.0963	1.0642	45.914	8	3	Median	1.5075	1.2827	42.083	2	1	Median	0.95802	1.1245	58.145	3	1	Median	0.7544	0.72286	50.136	2	1	Median	1.0975	1.099	NaN	1	0	Median	234290000	111110000	123180000	20493000	7017500	13475000	49178000	23104000	26074000	71677000	29878000	41799000	92945000	51113000	41833000	55858	2485	52595	339128;339129;339130;339131;339132;339133;339134;339135;339136	457330;457331;457332;457333;457334;457335;457336;457337;457338;457339;457340;457341;457342;457343;457344;457345;457346;457347;457348	457332			19	
VNDNKEPEQIAFQDEDEAQLNK	2	Unmodified	2573.1882	0.1881543	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	1			By MS/MS		1	0	1											1		50.914	50.5	3	5.4454E-10	45609	160511_QHF_FH_JSI11i_1	108.25	101.45			1.4422	1.3551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4422	1.3551	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	50767000	17149000	33618000	0	0	0	0	0	0	50767000	17149000	33618000	0	0	0	55859	2352	52596	339137	457349;457350	457349			2	
VNDTIQIDLETGK	1	Unmodified	1444.7409	0.74093835	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	59.025	58.377	2	2.9949E-10	52544	160511_QHF_FH_JSI10i_1	146.36	131.09			1.1108	1.1029	6.7062	4	0	Median	1.2639	1.0191	NaN	1	0	Median	0.97087	1.1526	NaN	1	0	Median	1.2213	1.1698	NaN	1	0	Median	1.0104	1.0554	NaN	1	0	Median	1634800000	779240000	855590000	263580000	142220000	121360000	462980000	227720000	235260000	328910000	142860000	186040000	579380000	266440000	312930000	55860	2013	52597	339138;339139;339140;339141;339142	457351;457352;457353;457354;457355;457356;457357;457358;457359;457360;457361;457362;457363;457364;457365;457366	457361			16	
VNDVLIVPYRK	1	Unmodified	1314.766	0.76597131	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	50.615	50.063	3	0.00029055	44104	160511_QHF_FH_JSI11i_3	65.395	55.708			0.84349	0.76991	20.623	5	0	Median	0.85304	0.76991	NaN	1	0	Median	0.57544	0.7017	NaN	1	0	Median	0.9408	0.92087	33.55	2	0	Median	0.84349	0.8694	NaN	1	0	Median	485890000	252480000	233410000	47833000	20475000	27358000	54139000	28677000	25463000	201940000	103900000	98035000	181980000	99429000	82550000	55861	2584	52598	339143;339144;339145;339146;339147	457367;457368;457369;457370	457367			4	
VNDVPEEFLYNPLTR	0	Unmodified	1804.8996	0.89956426	700	O95486	SEC24A	Protein transport protein Sec24A	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			89.975	89.892	2	0.0097071	81602	160511_QHF_FH_JSI10i_1	46.159	31.283			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55862	700	52599	339148	457371	457371			1	
VNDVPEEFMYNPLTR	0	Unmodified	1822.856	0.85598488	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	84.953	84.618	2	0.0037176	76826	160511_QHF_FH_JSI10i_1	63.727	40.848			0.91945	1.0738	28.766	3	2	Median	NaN	NaN	NaN	0	0	Median	0.91945	1.0738	NaN	1	1	Median	1.6883	1.6313	NaN	1	0	Median	0.90318	0.93994	NaN	1	1	Median	55884000	30392000	25491000	0	0	0	16857000	10063000	6793800	19224000	8042300	11181000	19803000	12286000	7516200	55863	701	52600	339149;339150;339151	457372;457373;457374	457374			3	
VNDVVPWVLDVILNK	1	Unmodified	1721.9716	0.97160699	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5								2	3	2	103.23	103.19	2;3	5.7855E-07	92300	160511_QHF_FH_JSI11i_3	138.94	92.963			1.0915	1.0884	8.8633	7	2	Median	NaN	NaN	NaN	0	0	Median	0.81695	0.98615	8.1246	2	0	Median	1.234	1.1658	11.984	3	2	Plateau	1.0998	1.0961	0.99698	2	0	Median	366600000	167450000	199150000	0	0	0	24027000	12267000	11760000	86905000	35856000	51049000	255670000	119330000	136340000	55864	2997	52601	339152;339153;339154;339155;339156;339157;339158	457375;457376;457377;457378;457379;457380;457381	457376			7	
VNEAAPEK	1	Unmodified	856.42905	0.42904669	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		8.2703	8.2703	3	0.055367	5948	160511_QHF_FH_JSI11i_3	13.037	0.048511			1.7462	1.6366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7462	1.6366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	215600000	76342000	139260000	0	0	0	0	0	0	215600000	76342000	139260000	0	0	0	55865	2947	52602	339159	457382	457382			1	
VNEAAPEKPQDDSGTAGGISSTSASVNR	1	Unmodified	2744.2849	0.28490823	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.469	31.865	3	1.2524E-31	28352	160511_QHF_FH_JSI10i_1	141.49	128.43			1.0715	1.063	17.447	4	0	Median	1.1814	0.98416	NaN	1	0	Median	0.97178	1.1482	NaN	1	0	Median	1.2584	1.2427	NaN	1	0	Median	0.80292	0.83776	NaN	1	0	Median	758460000	371660000	386800000	149540000	74252000	75290000	258500000	128260000	130240000	202470000	94617000	107860000	147940000	74533000	73412000	55866	2947	52603	339160;339161;339162;339163	457383;457384;457385;457386;457387;457388;457389;457390	457388			8	
VNEAREELMR	0	Oxidation (M)	1261.6085	0.60848439	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	11.256	11.301	2	0.015144	8967	160511_QHF_FH_JSI11i_3	68.657	41.354			1.0197	0.99122	7.9086	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1046	1.0482	NaN	1	0	Median	0.94144	0.93731	NaN	1	0	Median	183450000	94104000	89344000	0	0	0	0	0	0	107180000	53384000	53794000	76269000	40720000	35549000	55867	1944;2125	52604	339164;339165	457391	457391		1615	1	
VNEAREELMR	0	Unmodified	1245.6136	0.61356977	2125;1944	P61204;P84077	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.61		11	4						4	4	5	5	5	19.459	17.286	2;3	0.00012918	14750	160511_QHF_FH_JSI9i_2	78.655	53.802			1.279	1.3031	28.071	15	7	Median	1.267	1.0838	31.099	4	0	Median	1.0759	1.2846	31.153	4	3	Median	1.3594	1.3455	12.483	4	2	Linear	1.2544	1.3031	36.905	3	2	Median	6532400000	2677000000	3855400000	1399400000	518720000	880680000	2278300000	997760000	1280500000	2078800000	804820000	1274000000	775860000	355720000	420140000	55868	1944;2125	52604	339166;339167;339168;339169;339170;339171;339172;339173;339174;339175;339176;339177;339178;339179;339180;339181;339182;339183;339184	457392;457393;457394;457395;457396;457397;457398;457399;457400;457401;457402;457403;457404;457405;457406;457407;457408;457409;457410;457411;457412;457413;457414;457415	457402			24	
VNEASGDGDGEDAVVILEK	1	Unmodified	1915.9011	0.9010804	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	59.461	58.732	2;3	2.3751E-42	53092	160511_QHF_FH_JSI10i_1	205.68	188.74			0.89493	0.95532	23.814	6	3	Median	1.4502	1.2086	35.834	2	1	Median	0.85182	1.0122	NaN	1	0	Median	0.83791	0.79377	NaN	1	0	Median	0.872	0.90537	10.166	2	2	Median	387860000	202100000	185750000	99590000	43202000	56388000	74677000	43448000	31229000	65442000	30949000	34492000	148150000	84503000	63644000	55869	4003	52605	339185;339186;339187;339188;339189;339190	457416;457417;457418;457419;457420;457421;457422;457423;457424;457425;457426	457423			11	
VNEFGESYEEK	1	Unmodified	1329.5725	0.57247604	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.256	29.658	2	2.7697E-09	26448	160511_QHF_FH_JSI11i_1	128.03	118.35			0.89925	0.86576	6.8578	4	0	Linear	1.1553	0.94531	NaN	1	0	Median	0.79349	0.92539	NaN	1	0	Median	1.0191	0.9873	NaN	1	0	Median	0.79228	0.83948	NaN	1	0	Median	833210000	390730000	442490000	171430000	76513000	94914000	245180000	127970000	117200000	166600000	67487000	99114000	250010000	118750000	131250000	55870	4153	52606	339191;339192;339193;339194	457427;457428;457429;457430;457431;457432;457433;457434	457428			8	
VNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATR	0	Unmodified	3867.8837	0.88366278	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		91.007	90.647	3	0.037325	82558	160511_QHF_FH_JSI11i_1	16.611	11.705			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5914400	0	5914400	0	0	0	0	0	0	5914400	0	5914400	0	0	0	55871	751	52607	339195	457435	457435			1	
VNEHEQDGNELQTTPEFR	0	Unmodified	2141.9614	0.96138925	4002	Q96C57	C12orf43	Uncharacterized protein C12orf43	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		3								2			1	37.254	35.902	3	0.0002148	30543	160511_QHF_FH_JSI12i_2	56.215	52.247			0.83304	0.88488	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83304	0.88488	NaN	1	0	Median	23298000	10724000	12574000	0	0	0	0	0	0	0	0	0	23298000	10724000	12574000	55872	4002	52608	339196;339197;339198	457436;457437;457438;457439;457440	457438			5	
VNEIVETNRPDSK	1	Unmodified	1499.758	0.7579854	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.662	4	7	2							1	4	3	5	19.519	19.027	2;3	4.9786E-06	15488	160511_QHF_FH_JSI11i_2	131.37	96.145			1.0273	1.0342	19.438	13	2	Median	1.1303	0.98672	NaN	1	0	Median	1.1069	1.34	7.9573	4	1	Median	1.1317	1.1137	4.3656	3	0	Median	0.84574	0.91039	14.271	5	1	Median	1566700000	795510000	771200000	48749000	20192000	28558000	522570000	258420000	264150000	411690000	226260000	185440000	583690000	290630000	293060000	55873	2598	52609	339199;339200;339201;339202;339203;339204;339205;339206;339207;339208;339209;339210;339211	457441;457442;457443;457444;457445;457446;457447;457448;457449;457450;457451;457452;457453;457454;457455;457456;457457;457458;457459;457460	457452			20	
VNELTKHR	1	Acetyl (K)	1037.5618	0.56179219	5222	Q9P2R3	ANKFY1	Rabankyrin-5	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	16.445	8.8218	3	0.017282	6252	160513_QHF_FH_JSI11Kac_6	40.331	25.18			0.68179	0.83013	16.024	4	0	Linear	0.91803	0.79395	NaN	1	0	Median	0.73087	0.86797	NaN	1	0	Median	0.69836	0.67883	NaN	1	0	Median	0.92152	0.99462	NaN	1	0	Median	40401000	23200000	17201000	9122200	4809600	4312500	10576000	5885100	4691300	14271000	8636800	5634300	6431200	3868300	2563000	55874	5222	52610	339212;339213;339214;339215	457461;457462	457461	3340		2	
VNEMIIGGGMAFTFLK	1	Unmodified	1726.8786	0.87863458	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	5.44		8	3	7	1				35	12	15	19	8	96.424	90.498	2;3	1.0293E-52	47727	160513_QHF_FH_JSI11Kac_6	192.65	164.32			0.9283	0.94027	18.585	40	8	Median	1.1515	0.99295	11.308	8	2	Median	0.7085	0.84673	25.428	13	3	Median	0.9976	0.95499	13.275	12	2	Median	0.88352	0.98227	14.376	7	1	Median	12150000000	6472300000	5678000000	2493300000	1231300000	1261900000	3209900000	2015700000	1194200000	4387600000	2187100000	2200500000	2059500000	1038100000	1021400000	55875	775	52611	339216;339217;339218;339219;339220;339221;339222;339223;339224;339225;339226;339227;339228;339229;339230;339231;339232;339233;339234;339235;339236;339237;339238;339239;339240;339241;339242;339243;339244;339245;339246;339247;339248;339249;339250;339251;339252;339253;339254;339255;339256;339257;339258;339259;339260;339261;339262;339263;339264;339265;339266;339267;339268;339269	457463;457464;457465;457466;457467;457468;457469;457470;457471;457472;457473;457474;457475;457476;457477;457478;457479;457480;457481;457482;457483;457484;457485;457486;457487;457488;457489;457490;457491;457492;457493;457494;457495;457496;457497;457498;457499;457500;457501;457502;457503;457504;457505;457506;457507;457508;457509;457510;457511;457512;457513;457514;457515;457516;457517;457518;457519;457520;457521;457522;457523;457524;457525;457526;457527;457528;457529;457530;457531;457532;457533;457534;457535;457536;457537;457538;457539	457472			75	
VNEMIIGGGMAFTFLK	1	Oxidation (M)	1742.8735	0.8735492	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.08		9	2	6	1				15	5	9	11	8	92.042	86.107	2;3	7.8439E-53	43761	160513_QHF_FH_JSI9Kac_6	193.06	21.328			0.90878	0.91044	21.587	31	4	Median	1.2551	1.0917	7.8087	5	0	Median	0.72953	0.83739	21.052	8	2	Plateau	0.9363	0.89437	24.697	10	1	Median	0.80854	0.85539	25.424	8	1	Median	5018300000	2505500000	2512700000	1475800000	610910000	864860000	1228100000	711590000	516500000	1186100000	612200000	573860000	1128300000	570830000	557510000	55876	775	52611	339270;339271;339272;339273;339274;339275;339276;339277;339278;339279;339280;339281;339282;339283;339284;339285;339286;339287;339288;339289;339290;339291;339292;339293;339294;339295;339296;339297;339298;339299;339300;339301;339302	457540;457541;457542;457543;457544;457545;457546;457547;457548;457549;457550;457551;457552;457553;457554;457555;457556;457557;457558;457559;457560;457561;457562;457563;457564;457565;457566;457567;457568;457569;457570;457571;457572;457573;457574;457575;457576;457577;457578;457579;457580;457581;457582;457583;457584	457565		291;292	43	
VNEMIIGGGMAFTFLK	1	2 Oxidation (M)	1758.8685	0.86846383	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.85		1	1						6	3	1	1	3	84.562	77.275	2;3	3.2639E-24	41391	160513_QHF_FH_JSI11Kac_6	157.2	13.951			0.86246	0.90746	17.267	6	2	Median	1.4797	1.218	NaN	1	0	Median	0.6989	0.84056	NaN	1	0	Median	1.2691	1.2103	NaN	1	0	Median	0.80501	0.84618	4.3079	3	2	Plateau	973640000	505370000	468270000	25881000	8917300	16964000	146350000	88136000	58212000	128630000	60551000	68084000	672770000	347760000	325010000	55877	775	52611	339303;339304;339305;339306;339307;339308;339309;339310	457585;457586;457587;457588;457589;457590;457591;457592;457593	457585		291;292	9	
VNEMIVTGQYGR	0	Unmodified	1365.6711	0.67108465	3251	Q7Z2W9	MRPL21	39S ribosomal protein L21, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	43.238	42.585	2	0.00075107	36370	160511_QHF_FH_JSI12i_2	68.069	57.837			0.7991	0.85799	22.193	5	0	Median	NaN	NaN	NaN	0	0	Median	0.67912	0.78977	NaN	1	0	Median	0.78984	0.76789	26.048	2	0	Median	0.94399	1.0031	22.101	2	0	Median	239680000	131630000	108050000	0	0	0	48606000	31665000	16941000	112990000	60507000	52479000	78090000	39458000	38633000	55878	3251	52612	339311;339312;339313;339314;339315	457594;457595;457596;457597;457598;457599	457596			6	
VNFAMNVGK	1	Oxidation (M)	994.4906	0.49060109	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	4.9			2				2	3	3	1	3	3	3	36.757	29.173	2	0.00026074	25261	160511_QHF_FH_JSI11i_3	87.323	64.303			0.90487	0.94671	23.374	10	1	Median	1.0991	0.9427	NaN	1	0	Median	0.79557	0.95074	43.476	3	1	Median	1.2624	1.1667	19.367	3	0	Plateau	0.92918	0.99703	4.9686	3	0	Median	1982500000	965430000	1017100000	22644000	10792000	11852000	78569000	40431000	38138000	857950000	407970000	449980000	1023300000	506230000	517110000	55879	1055	52613	339316;339317;339318;339319;339320;339321;339322;339323;339324;339325	457600;457601;457602;457603;457604;457605;457606;457607;457608	457601		685	8	
VNFAMNVGK	1	Unmodified	978.49569	0.49568646	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.68	4	3	4				1	4	4	5	6	4	5	50.613	45.603	2	5.7507E-06	38994	160511_QHF_FH_JSI12i_3	114.6	82.132			1.0417	1.0028	11.594	20	0	Median	1.2293	0.92688	6.6331	5	0	Linear	0.83362	0.99663	14.142	6	0	Median	1.1129	1.0642	6.49	4	0	Median	0.89758	0.94334	16.119	5	0	Median	26199000000	12382000000	13817000000	4950800000	2107200000	2843700000	6418700000	3581800000	2836900000	6249900000	2651300000	3598600000	8579700000	4041400000	4538300000	55880	1055	52613	339326;339327;339328;339329;339330;339331;339332;339333;339334;339335;339336;339337;339338;339339;339340;339341;339342;339343;339344;339345	457609;457610;457611;457612;457613;457614;457615;457616;457617;457618;457619;457620;457621;457622;457623;457624;457625;457626;457627;457628;457629;457630;457631;457632;457633;457634;457635;457636;457637;457638;457639;457640	457637			32	
VNFATWNQAR	0	Unmodified	1205.5942	0.59415496	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			50.383	48.8	2	0.0013132	39973	160511_QHF_FH_JSI9i_3	66.621	55.131			1.0695	1.0392	9.298	2	0	Median	1.3455	1.1098	NaN	1	0	Median	0.85014	0.97306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117330000	53580000	63753000	68164000	28043000	40120000	49170000	25537000	23633000	0	0	0	0	0	0	55881	1432	52614	339346;339347	457641;457642;457643;457644	457644			4	
VNFDDYTVNLGGLK	1	Unmodified	1553.7726	0.77257283	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	3	1	83.666	83.141	2	0.0001961	75791	160511_QHF_FH_JSI11i_1	113.61	92.739			0.69677	0.70745	34.485	7	1	Median	0.85493	0.70893	25.419	2	0	Median	0.60017	0.70745	NaN	1	0	Median	0.45875	0.45287	43.087	3	1	Median	0.74012	0.79023	NaN	1	0	Median	598580000	364390000	234180000	101150000	52347000	48806000	142900000	86549000	56352000	246640000	166260000	80376000	107890000	59236000	48650000	55882	2242	52615	339348;339349;339350;339351;339352;339353;339354	457645;457646;457647;457648;457649;457650;457651;457652;457653;457654	457646			10	
VNFEDDSR	0	Unmodified	980.41994	0.41993856	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.1	18.603	2	0.015892	16098	160511_QHF_FH_JSI12i_1	50.04	39.626			0.88687	0.94852	10.284	4	0	Median	1.2589	1.035	NaN	1	0	Median	0.82715	0.97444	NaN	1	0	Median	0.95092	0.92329	NaN	1	0	Median	0.79603	0.81295	NaN	1	0	Median	468690000	228550000	240140000	122280000	48474000	73804000	108880000	56457000	52427000	125080000	63010000	62074000	112440000	60605000	51837000	55883	636	52616	339355;339356;339357;339358	457655;457656;457657;457658;457659	457656			5	
VNFEDDSRGK	1	Unmodified	1165.5364	0.53636531	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	14.031	14.105	3	0.0046023	10943	160511_QHF_FH_JSI12i_3	53.211	43.779			0.80384	0.79908	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80384	0.79908	NaN	1	1	Median	154590000	104180000	50413000	0	0	0	0	0	0	0	0	0	154590000	104180000	50413000	55884	636	52617	339359	457660	457660			1	
VNFGTDFLTAIK	1	Unmodified	1324.7027	0.70270235	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.412	91.917	2	0.0090254	80735	160511_QHF_FH_JSI11i_2	57.836	48.403			1.0145	1.0252	15.148	4	0	Median	1.0047	0.84815	NaN	1	0	Median	0.75421	0.92747	NaN	1	0	Median	1.1439	1.1333	NaN	1	0	Median	1.0245	1.1543	NaN	1	0	Median	238450000	127650000	110810000	50465000	27431000	23034000	82614000	44671000	37942000	56234000	30216000	26018000	49140000	25329000	23812000	55885	2712	52618	339360;339361;339362;339363	457661;457662;457663	457663			3	
VNFHMFDVGGQR	0	Unmodified	1405.6561	0.65610329	2048	Q5JWF2;P63092;P38405	GNAS;GNAL	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	2	1	64.677	60.214	3	0.00043533	49468	160511_QHF_FH_JSI9i_3	55.314	52.126			0.91245	0.85488	19.016	5	0	Median	1.0425	0.84602	NaN	1	0	Median	0.91245	1.0452	NaN	1	0	Median	1.0954	1.0445	28.337	2	0	Median	0.74911	0.81412	NaN	1	0	Median	255120000	137910000	117210000	90982000	47210000	43773000	59567000	31090000	28476000	93336000	53753000	39583000	11232000	5859200	5373100	55886	2048	52619	339364;339365;339366;339367;339368	457664;457665;457666;457667;457668;457669;457670	457667			7	
VNFLPEIITLSK	1	Unmodified	1372.7966	0.79660274	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	1	2	2	101.31	101.22	2	1.1407E-07	90303	160511_QHF_FH_JSI11i_3	136.48	100.14			1.0028	0.98071	10.794	7	1	Median	1.0675	0.89278	4.6629	2	1	Median	0.79688	0.98071	NaN	1	0	Median	1.0215	1.0128	7.3716	2	0	Median	1.0609	1.1209	9.9128	2	0	Median	2504800000	1242900000	1261900000	400010000	201720000	198290000	342410000	199600000	142810000	910700000	443090000	467610000	851720000	398480000	453240000	55887	2517	52620	339369;339370;339371;339372;339373;339374;339375	457671;457672;457673;457674;457675;457676;457677;457678	457672			8	
VNFPENGFLSPDK	1	Unmodified	1462.7092	0.70924429	1376	P31689	DNAJA1	DnaJ homolog subfamily A member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	5.16	4	1						1		1	1	3	1	72.228	70.003	2	0.00016189	63818	160511_QHF_FH_JSI10i_1	83.182	53.415			0.71392	0.7084	36.117	6	3	Median	0.99056	0.82747	NaN	1	0	Median	0.76697	0.8873	NaN	1	0	Median	0.7257	0.71299	45.143	3	2	Plateau	0.6087	0.64088	NaN	1	1	Median	939650000	532500000	407160000	96344000	52993000	43351000	204840000	112680000	92165000	493910000	278100000	215810000	144560000	88729000	55832000	55888	1376	52621	339376;339377;339378;339379;339380;339381	457679;457680;457681;457682;457683;457684;457685	457681			7	
VNFSEAFIAWIHVK	1	Unmodified	1659.8773	0.87731267	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	16	0									3	1		1	1	93.079	83.852	3	9.8169E-06	47317	160513_QHF_FH_JSI11Kac_6	100.45	88.538			0.87884	0.93006	31.632	3	0	Median	0.73255	0.62215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.234	1.1612	NaN	1	0	Median	0.87884	0.93006	NaN	1	0	Median	325510000	161110000	164400000	95129000	57171000	37958000	0	0	0	149470000	66214000	83259000	80905000	37720000	43184000	55889	1190	52622	339382;339383;339384	457686;457687	457686			2	
VNFSEEGETEEDDQDSSHSSVTTVK	1	Unmodified	2755.158	0.15803596	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.489	38.862	3	2.8938E-35	34784	160511_QHF_FH_JSI10i_1	180.37	179.49			0.82429	0.91953	6.5265	4	0	Linear	1.2521	1.0209	NaN	1	0	Median	0.7432	0.8978	NaN	1	0	Median	1.0265	1.0104	NaN	1	0	Median	0.85837	0.91914	NaN	1	0	Median	865540000	483460000	382080000	69616000	29285000	40331000	289430000	178970000	110470000	238460000	116690000	121770000	268030000	158520000	109510000	55890	2906	52623	339385;339386;339387;339388	457688;457689;457690;457691;457692;457693;457694;457695;457696;457697	457693			10	
VNFTVDQIR	0	Unmodified	1090.5771	0.57710791	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	5	6	6	6	56.824	51.497	2	1.836E-08	27139	160513_QHF_FH_JSI9Kac_5	146.69	89.646			1.0573	1.0761	8.9623	23	1	Median	1.3781	1.1215	6.2853	5	0	Median	0.93303	1.0766	12.181	6	0	Median	1.0884	1.0642	5.462	6	0	Median	0.96009	1.0232	7.1234	6	1	Median	29874000000	14852000000	15022000000	5057900000	2091900000	2966000000	7233700000	3599700000	3634000000	9793700000	4896100000	4897600000	7788400000	4263900000	3524500000	55891	1033	52624	339389;339390;339391;339392;339393;339394;339395;339396;339397;339398;339399;339400;339401;339402;339403;339404;339405;339406;339407;339408;339409;339410;339411	457698;457699;457700;457701;457702;457703;457704;457705;457706;457707;457708;457709;457710;457711;457712;457713;457714;457715;457716;457717;457718;457719;457720;457721;457722;457723;457724;457725;457726;457727;457728;457729;457730;457731;457732;457733;457734;457735	457708			38	
VNFTVDQIRAIMDK	1	Unmodified	1648.8607	0.86067633	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		86.785	86.007	3	0.00010751	71889	160511_QHF_FH_JSI10i_3	75.764	63.788			0.092277	0.10459	235.69	3	1	Median	4.4493	3.6374	NaN	1	0	Median	0.092277	0.10459	NaN	1	0	Median	0.045342	0.042005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	147450000	86353000	61093000	62031000	9718900	52312000	40915000	33690000	7225200	44500000	42944000	1555600	0	0	0	55892	1033	52625	339412;339413;339414	457736;457737	457737			2	
VNGDASPAAAESGAK	1	Unmodified	1343.6317	0.63172225	1329	P29966	MARCKS	Myristoylated alanine-rich C-kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.12	4	1			1	1				1	2	2	2	15.556	12.885	2	2.0563E-06	10679	160511_QHF_FH_JSI11i_1	129.37	100.64			1.0443	1.0135	21.941	6	0	Median	1.3596	1.1208	NaN	1	0	Median	0.70472	0.84328	0.7429	2	0	Median	1.3105	1.265	NaN	1	0	Median	1.0551	1.137	30.494	2	0	Median	2230600000	1129100000	1101500000	574460000	248990000	325470000	588920000	385510000	203420000	624180000	299810000	324380000	443060000	194810000	248250000	55893	1329	52626	339415;339416;339417;339418;339419;339420;339421	457738;457739;457740;457741;457742;457743;457744;457745;457746	457739			9	
VNGEDPYPHK	1	Unmodified	1154.5356	0.53563702	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	4.6	4.72		3	1				1			1		2	2	13.572	11.864	2;3	0.036564	9446	160511_QHF_FH_JSI11i_2	45.997	21.102			0.91608	0.89091	35.123	5	1	Median	1.0153	0.89091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68565	0.67452	39.134	2	1	Median	1.0727	1.1168	29.252	2	0	Median	551920000	261500000	290420000	103630000	47043000	56588000	0	0	0	217600000	119320000	98279000	230690000	95136000	135550000	55894	2614	52627	339422;339423;339424;339425;339426	457747;457748;457749	457748			3	
VNGEVVQSGNTNQMVFK	1	Unmodified	1849.8992	0.89924668	4092	Q96GK7	FAHD2A	Fumarylacetoacetate hydrolase domain-containing protein 2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	49.255	48.575	2	1.0018E-10	44026	160511_QHF_FH_JSI11i_1	145.81	123.77			0.94698	0.84634	37.349	4	1	Linear	0.50432	0.40715	NaN	1	1	Median	0.70891	0.8188	NaN	1	0	Median	0.92362	0.87481	NaN	1	0	Median	0.85755	0.87853	NaN	1	0	Median	128940000	72802000	56140000	18890000	10853000	8036600	27209000	15616000	11592000	49168000	29124000	20044000	33675000	17209000	16467000	55895	4092	52628	339427;339428;339429;339430;339431	457750;457751;457752;457753;457754;457755	457750			6	
VNGRPLEMIEPR	0	Unmodified	1409.7449	0.74491829	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.55	0.498		5	6							4	4	2	1	45.038	43.969	2;3	0.00018156	36862	160511_QHF_FH_JSI10i_3	108.47	77.906			0.89064	1.0076	18.92	11	1	Median	1.4947	1.1684	4.2843	4	0	Linear	0.84818	1.0051	5.9344	4	0	Median	0.8219	0.77443	20.843	2	1	Median	0.85401	0.94503	NaN	1	0	Median	4951300000	2379200000	2572100000	2316600000	932070000	1384500000	2292000000	1265000000	1027000000	321740000	171160000	150580000	21000000	10930000	10070000	55896	1987	52629	339432;339433;339434;339435;339436;339437;339438;339439;339440;339441;339442	457756;457757;457758;457759;457760;457761;457762;457763;457764;457765;457766;457767;457768;457769;457770	457758			15	
VNHEPEPAGGATPGATLPK	1	Unmodified	1841.9272	0.92717599	146	O00499	BIN1	Myc box-dependent-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.92	5.28	3	4	2				3			1	2	5	4	34.338	31.437	3	1.1291E-07	26549	160511_QHF_FH_JSI12i_2	89.028	81.62			0.97347	1.0421	17.881	12	2	Median	1.2134	1.0406	NaN	1	0	Median	0.90397	1.0826	7.4196	2	0	Median	1.1288	1.0816	26.276	5	2	Median	0.9281	0.98771	14.444	4	0	Median	1141600000	602930000	538680000	136910000	64707000	72200000	285200000	152620000	132590000	422200000	233940000	188260000	297300000	151660000	145640000	55897	146	52630	339443;339444;339445;339446;339447;339448;339449;339450;339451;339452;339453;339454	457771;457772;457773;457774;457775;457776;457777;457778;457779;457780;457781;457782;457783;457784	457774			14	
VNHNKYMVTER	1	Acetyl (K)	1431.6929	0.69288272	3401	Q8IV08	PLD3	Phospholipase D3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		30.18	20.982	3	0.019425	12082	160513_QHF_FH_JSI11Kac_6	45.257	35.824			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5510400	5510400	0	0	0	0	0	0	0	5510400	5510400	0	0	0	0	55898	3401	52631	339455	457785	457785	2858		1	
VNHVTLSQPK	1	Unmodified	1121.6193	0.61930707	1963	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.56		3	7					2	8	6	5	5	4	19.234	14.98	2;3	5.7558E-08	12677	160511_QHF_FH_JSI10i_2	95.483	82.525			0.98408	0.90613	26.896	20	0	Median	0.98408	0.83763	4.6446	6	0	Median	0.78158	0.92882	45.044	5	0	Median	1.0914	1.0614	9.435	5	0	Median	0.8382	0.86059	6.3437	4	0	Median	13290000000	7215800000	6074400000	308940000	164300000	144630000	2616600000	1229500000	1387000000	4296500000	2058200000	2238300000	6068200000	3763800000	2304400000	55899	1963	52632	339456;339457;339458;339459;339460;339461;339462;339463;339464;339465;339466;339467;339468;339469;339470;339471;339472;339473;339474;339475	457786;457787;457788;457789;457790;457791;457792;457793;457794;457795;457796;457797;457798;457799;457800;457801;457802;457803;457804;457805;457806;457807;457808;457809;457810;457811;457812	457801			27	
VNIAFNYDMPEDSDTYLHR	0	Unmodified	2299.0215	0.021546663	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	3	2	4	77.373	76.646	2;3	1.1279E-42	66550	160511_QHF_FH_JSI12i_3	199.76	191.4			1.0442	1.1092	25.929	10	2	Median	1.3178	1.1215	50.753	3	2	Median	0.87389	1.0374	17.512	2	0	Median	1.1881	1.1448	1.3472	2	0	Median	1.0119	1.0864	4.9506	3	0	Plateau	2823300000	1354300000	1469000000	216220000	101570000	114660000	299090000	155690000	143400000	960310000	426050000	534260000	1347700000	671030000	676680000	55900	2474	52633	339476;339477;339478;339479;339480;339481;339482;339483;339484;339485;339486;339487	457813;457814;457815;457816;457817;457818;457819;457820;457821;457822;457823;457824;457825;457826;457827;457828;457829;457830;457831;457832;457833;457834	457831			22	
VNIAFNYDMPEDSDTYLHR	0	Oxidation (M)	2315.0165	0.016461285	2474	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	68.515	68.366	3	4.0178E-10	58722	160511_QHF_FH_JSI12i_3	124.26	115.55			1.1356	1.1339	24.365	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4942	1.401	36.51	2	0	Median	1.1138	1.1339	0.81664	2	0	Median	243750000	114310000	129440000	0	0	0	0	0	0	92099000	42554000	49544000	151660000	71760000	79895000	55901	2474	52633	339488;339489;339490;339491	457835;457836;457837;457838;457839	457837		1969	3	
VNIDDLVK	1	Unmodified	914.5073	0.50729701	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	60.204	59.325	2	0.0055661	52586	160511_QHF_FH_JSI9i_1	65.246	23.594			1.0665	0.99656	13.83	2	0	Median	1.0917	0.90372	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0419	1.0989	NaN	1	0	Median	296060000	145310000	150760000	152500000	80085000	72413000	0	0	0	0	0	0	143560000	65221000	78343000	55902	655	52634	339492;339493	457840;457841;457842	457841			3	
VNIDFEPFKPINTSLYLCDNK	2	Unmodified	2526.2465	0.24646122	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	99.572	99.592	3	7.9981E-05	86281	160511_QHF_FH_JSI12i_3	61.703	49.507			0.27833	0.28787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27833	0.28787	NaN	1	1	Median	144850000	111970000	32883000	0	0	0	0	0	0	0	0	0	144850000	111970000	32883000	55903	2010	52635	339494	457843	457843			1	
VNIEGGAIALGHPLGASGCR	0	Unmodified	1947.9949	0.9948784	4496	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	2	1		62.57	61.688	3	1.8787E-09	54679	160511_QHF_FH_JSI10i_2	90.308	73.027			0.67641	0.82847	3.5956	3	3	Median	1.0133	0.8711	NaN	1	1	Median	0.6749	0.82042	1.38	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	354670000	202970000	151710000	79941000	36099000	43843000	274730000	166870000	107870000	0	0	0	0	0	0	55904	4496	52636	339495;339496;339497;339498;339499	457844;457845;457846;457847;457848;457849	457848			6	
VNIFGVESGKK	2	Unmodified	1176.6503	0.65027285	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		2	10							4	3	2	3	41.485	40.624	2;3	4.8898E-06	34543	160511_QHF_FH_JSI12i_3	82.278	76.618			1.054	0.98559	14.527	12	2	Median	1.0768	0.91382	11.934	4	2	Median	1.0429	1.2046	12.518	3	0	Median	1.1472	1.0767	10.793	2	0	Median	0.84711	0.92802	7.6281	3	0	Plateau	3462200000	1951300000	1510900000	513070000	230550000	282520000	559130000	293290000	265850000	823810000	462960000	360850000	1566200000	964500000	601680000	55905	4605	52637	339500;339501;339502;339503;339504;339505;339506;339507;339508;339509;339510;339511	457850;457851;457852;457853;457854;457855;457856;457857;457858;457859;457860;457861;457862;457863;457864;457865;457866;457867	457864			18	
VNIGEVLDK	1	Unmodified	985.54441	0.5444108	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.804	55.862	2	0.0039802	48992	160511_QHF_FH_JSI9i_2	57.96	33.805			0.8985	0.92326	7.7058	4	0	Median	0.94608	0.83076	NaN	1	0	Median	0.72055	0.8913	NaN	1	0	Median	0.99207	0.98769	NaN	1	0	Median	0.85331	0.95636	NaN	1	0	Median	246370000	118860000	127510000	45890000	18519000	27371000	41643000	22174000	19470000	87071000	42330000	44741000	71765000	35837000	35928000	55906	2432	52638	339512;339513;339514;339515	457868;457869;457870	457869			3	
VNIGQGSHPQK	1	Unmodified	1163.6047	0.60471964	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	5	4	3	3	11.619	9.0513	2;3	8.1809E-06	7194	160511_QHF_FH_JSI12i_3	81.625	75.189			0.93257	0.92008	18.762	13	1	Median	1.1844	1.0101	25.989	3	1	Median	0.9031	1.0523	21.948	4	0	Median	1.0299	0.96395	13.545	3	0	Plateau	0.85444	0.85792	3.3476	3	0	Median	4030700000	2152900000	1877900000	118840000	50667000	68178000	766380000	359220000	407160000	1440600000	818260000	622300000	1705000000	924710000	780260000	55907	512	52639	339516;339517;339518;339519;339520;339521;339522;339523;339524;339525;339526;339527;339528;339529;339530	457871;457872;457873;457874;457875;457876;457877;457878;457879;457880;457881;457882;457883;457884;457885;457886;457887;457888	457886			18	
VNIHAIITLK	1	Unmodified	1120.6968	0.69682911	4803	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	1	2	2	61.651	60.826	3	0.0012148	52145	160511_QHF_FH_JSI12i_3	54.343	51.224			1.103	1.0609	26.686	4	2	Median	0.9881	0.81801	NaN	1	0	Median	0.81312	0.9108	NaN	1	1	Median	1.5256	1.4562	NaN	1	1	Median	1.2314	1.2358	NaN	1	0	Median	128040000	60976000	67062000	31775000	16273000	15502000	21337000	10525000	10812000	18194000	8451300	9742900	56732000	25726000	31005000	55908	4803	52640	339531;339532;339533;339534;339535;339536	457889;457890;457891;457892;457893;457894;457895;457896	457894			8	
VNIHGIFSVASASVIEK	1	Unmodified	1769.9676	0.96758424	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			83.456	82.192	3	0.038306	67674	160511_QHF_FH_JSI9i_3	38.418	36.548			0.78415	0.7605	21.249	2	0	Median	1.072	0.8838	NaN	1	0	Median	0.57361	0.65441	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72637000	38663000	33974000	40654000	18885000	21770000	31983000	19778000	12204000	0	0	0	0	0	0	55909	723	52641	339537;339538	457897	457897			0	
VNIIPLIAK	1	Unmodified	979.643	0.64300263	2725	Q16181;Q6ZU15	SEPT7;SEPT14	Septin-7;Septin-14	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.77	6	8	6						3	4	5	7	7	77.989	76.278	2	0.0001731	64861	160511_QHF_FH_JSI12i_2	87.323	0			0.96939	1.0046	18.924	23	0	Median	1.3541	1.1172	26.354	4	0	Median	0.83158	1.0046	11.293	5	0	Median	0.9163	0.91628	11.377	7	0	Median	1.0546	1.0381	22.086	7	0	Median	3991900000	1847500000	2144400000	553360000	208540000	344820000	709300000	375130000	334170000	1422200000	675490000	746670000	1307100000	588320000	718750000	55910	2725	52642	339539;339540;339541;339542;339543;339544;339545;339546;339547;339548;339549;339550;339551;339552;339553;339554;339555;339556;339557;339558;339559;339560;339561	457898;457899;457900;457901;457902;457903;457904;457905;457906;457907;457908;457909;457910;457911;457912;457913;457914;457915;457916;457917;457918;457919;457920;457921	457903			24	
VNIIPVIAK	1	Unmodified	965.62735	0.62735256	5192	Q9P0V9	SEPT10	Septin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.26	2	4	5					3		3	4	4	3	70.729	67.831	2	0.0001731	59367	160511_QHF_FH_JSI11i_2	87.323	20.291			1.2022	1.1611	17.66	14	0	Median	1.3269	1.1613	4.5022	3	0	Plateau	0.88435	1.0322	15.349	4	0	Median	1.2953	1.2576	7.5558	4	0	Median	0.9934	1.1438	30.688	3	0	Median	892440000	382110000	510330000	169460000	70390000	99066000	191670000	90449000	101220000	306270000	122700000	183570000	225040000	98568000	126470000	55911	5192	52643	339562;339563;339564;339565;339566;339567;339568;339569;339570;339571;339572;339573;339574;339575	457922;457923;457924;457925;457926;457927;457928;457929;457930;457931;457932;457933;457934;457935;457936;457937;457938	457932			17	
VNIIQFGTGYK	1	Unmodified	1238.6659	0.66592292	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0		By MS/MS		By MS/MS	5.4	5.31		1	3						1		3		2	68.579	66.383	2	0.00012556	57710	160511_QHF_FH_JSI12i_3	96.342	68.133			0.93242	0.96048	32.312	4	3	Median	NaN	NaN	NaN	0	0	Median	0.81788	0.9677	55.665	2	1	Median	NaN	NaN	NaN	0	0	Median	0.93242	0.96048	5.7474	2	2	Median	145660000	74968000	70695000	0	0	0	34691000	17314000	17377000	0	0	0	110970000	57654000	53318000	55912	5369	52644	339576;339577;339578;339579;339580	457939;457940;457941;457942;457943	457942			5	
VNIISVTNK	1	Unmodified	986.57605	0.57604528	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	6.01	1	4	4				2	2	1	2	5	4	3	46.436	42.235	2	0.00019193	35940	160511_QHF_FH_JSI12i_3	85.67	60.111			0.97273	0.98718	34.48	14	1	Median	1.0632	0.8856	15.802	2	0	Median	0.95297	1.1148	50.947	5	1	Median	0.98566	0.96881	23.009	4	0	Median	1.2095	1.2244	39.677	3	0	Plateau	1732500000	856080000	876410000	151040000	67579000	83461000	242520000	137760000	104760000	580220000	290260000	289960000	758710000	360480000	398230000	55913	4535	52645	339581;339582;339583;339584;339585;339586;339587;339588;339589;339590;339591;339592;339593;339594	457944;457945;457946;457947;457948;457949;457950;457951;457952;457953;457954;457955;457956	457956			13	
VNIKPQVDR	1	Unmodified	1067.6087	0.60874239	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.43	6.25		2	7					1	4	6	3	3	2	23.133	19.524	2;3	0.00060993	16657	160511_QHF_FH_JSI11i_3	92.439	65.837			1.0209	1.0712	17.565	14	2	Median	1.2129	0.98667	23.451	6	2	Median	0.90232	0.98613	4.8608	3	0	Plateau	1.1175	1.0733	3.7051	3	0	Plateau	0.85232	0.89446	25.213	2	0	Median	4253000000	2071500000	2181500000	2019500000	863940000	1155600000	1323700000	714270000	609430000	799990000	429180000	370810000	109820000	64095000	45725000	55914	1234	52646	339595;339596;339597;339598;339599;339600;339601;339602;339603;339604;339605;339606;339607;339608	457957;457958;457959;457960;457961;457962;457963;457964;457965;457966;457967;457968;457969;457970;457971;457972;457973;457974;457975;457976	457959			20	
VNILEVASGAVLR	0	Unmodified	1339.7823	0.78234966	2304	Q12788	TBL3	Transducin beta-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	95.363	95.217	2;3	0.0001587	83762	160511_QHF_FH_JSI11i_2	83.397	61.933			1.0506	1.0335	17.192	5	1	Median	1.0506	0.92616	NaN	1	0	Median	0.84683	1.0335	NaN	1	0	Median	0.99115	1.0058	NaN	1	0	Median	1.2772	1.3386	2.4042	2	1	Median	113810000	54453000	59356000	16663000	7594000	9068900	27104000	14461000	12643000	27449000	14928000	12521000	42593000	17470000	25123000	55915	2304	52647	339609;339610;339611;339612;339613	457977;457978;457979;457980;457981;457982;457983	457979			7	
VNILFDFVK	1	Unmodified	1093.6172	0.61718181	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	97.111	96.975	2	0.00056389	85770	160511_QHF_FH_JSI10i_2	78.334	40.776			0.98787	1.0446	24.913	6	1	Median	0.88362	0.78123	NaN	1	0	Median	0.86253	1.042	NaN	1	0	Median	1.0941	1.0739	3.5604	2	0	Median	1.2519	1.3191	35.071	2	1	Median	307710000	144670000	163030000	30828000	10941000	19887000	57240000	27651000	29588000	110100000	45959000	64138000	109540000	60120000	49420000	55916	1839	52648	339614;339615;339616;339617;339618;339619	457984;457985;457986;457987;457988;457989;457990;457991;457992;457993;457994;457995;457996	457994			13	
VNILFDFVKK	2	Unmodified	1221.7121	0.71214483	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	81.282	81.056	3	0.060026	70412	160511_QHF_FH_JSI12i_3	20.13	8.9175			4.6114	5.0155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.6114	5.0155	NaN	1	1	Median	7615300	795370	6819900	0	0	0	0	0	0	0	0	0	7615300	795370	6819900	55917	1839	52649	339620	457997	457997			1	
VNILSDMHLR	0	Unmodified	1196.6336	0.63357693	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	3	0			4								2	1	1	61.186	61.049	3	0.0088071	54239	160511_QHF_FH_JSI11i_3	29.926	25.909			0.90332	0.87347	17.895	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8036	0.76965	NaN	1	0	Median	1.0154	0.99129	NaN	1	0	Median	74247000	38157000	36090000	0	0	0	0	0	0	30442000	18699000	11743000	43805000	19458000	24347000	55918	1725	52650	339621;339622;339623;339624	457998;457999;458000	457998			3	
VNINGGAVSLGHPIGMSGAR	0	Unmodified	1905.9843	0.98431372	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.09	3.78		1	9						1	4	4	2	1	59.688	57.898	2;3	9.3527E-24	47450	160511_QHF_FH_JSI9i_3	133.14	100.19			0.93073	0.95147	19.705	9	3	Median	1.2116	0.96959	25.175	3	0	Plateau	0.76724	0.9288	9.3962	3	1	Plateau	0.96803	0.91435	5.6866	2	2	Median	0.80365	0.80225	NaN	1	0	Median	1462300000	759170000	703090000	482220000	215600000	266620000	575700000	336090000	239610000	326520000	165130000	161390000	77809000	42341000	35468000	55919	1249	52651	339625;339626;339627;339628;339629;339630;339631;339632;339633;339634;339635	458001;458002;458003;458004;458005;458006;458007;458008;458009;458010;458011;458012;458013	458010			13	
VNINGGAVSLGHPIGMSGAR	0	Oxidation (M)	1921.9792	0.97922834	1249	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS			3	0			2							1	1			50.867	49.285	3	6.8105E-07	40408	160511_QHF_FH_JSI9i_3	94.234	86.723			1.0552	1.0057	10.762	2	0	Median	1.3578	1.0852	NaN	1	0	Median	0.82013	0.93202	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	368190000	175600000	192590000	207920000	88363000	119560000	160270000	87236000	73030000	0	0	0	0	0	0	55920	1249	52651	339636;339637	458014;458015;458016	458016		883	3	
VNISNISIIIQELLQENIVR	0	Unmodified	2307.3162	0.31619577	4857	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.48	95.758	3	0.0050809	56523	160513_QHF_FH_JSI10Kac_6	55.208	46.416			1.1839	1.3689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1839	1.3689	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52509000	22725000	29784000	0	0	0	52509000	22725000	29784000	0	0	0	0	0	0	55921	4857	52652	339638	458017	458017			0	
VNIVFNYDMPEDSDTYLHR	0	Unmodified	2327.0528	0.052846792	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	80.913	80.513	3	1.3136E-18	69873	160511_QHF_FH_JSI12i_3	161.65	152.56			1.2419	1.2538	4.2592	4	1	Median	1.5335	1.2849	NaN	1	0	Median	1.0778	1.3226	NaN	1	1	Median	1.304	1.207	NaN	1	0	Median	1.1827	1.2234	NaN	1	0	Median	1050500000	476300000	574210000	74476000	33122000	41354000	89607000	44773000	44834000	376910000	165500000	211410000	509520000	232910000	276610000	55922	97	52653	339639;339640;339641;339642	458018;458019;458020;458021;458022;458023;458024	458024			7	
VNIVFNYDMPEDSDTYLHR	0	Oxidation (M)	2343.0478	0.047761414	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			3									1	2	72.701	72.505	3	1.4903E-09	63040	160511_QHF_FH_JSI12i_3	113.53	105.14			1.0848	1.0913	11.489	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2683	1.1543	NaN	1	0	Median	0.9768	1.0049	11.661	2	0	Median	144000000	65145000	78855000	0	0	0	0	0	0	32871000	13432000	19439000	111130000	51712000	59416000	55923	97	52653	339643;339644;339645	458025;458026;458027	458027		42	2	
VNIVPVIAK	1	Unmodified	951.6117	0.6117025	2603	Q15019	SEPT2	Septin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	3	3	3	63.399	59.913	2	0.0001731	53978	160511_QHF_FH_JSI10i_1	87.323	39.474			0.83358	0.9747	58.833	11	0	Median	0.47045	0.3888	140.32	2	0	Median	0.79836	0.98198	9.8333	3	0	Median	0.95063	0.9747	20.071	3	0	Median	0.78766	0.87254	18.899	3	0	Median	1991900000	1037100000	954880000	341650000	155890000	185760000	512410000	303660000	208750000	687470000	339660000	347810000	450430000	237870000	212560000	55924	2603	52654	339646;339647;339648;339649;339650;339651;339652;339653;339654;339655;339656	458028;458029;458030;458031;458032;458033;458034;458035;458036;458037;458038;458039;458040;458041;458042;458043;458044;458045	458036			18	
VNKDDIQK	2	Unmodified	958.50836	0.50835964	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.0395	8.1372	3	0.03576	5543	160511_QHF_FH_JSI12i_3	29.667	12.891			0.71495	0.72421	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71495	0.72421	NaN	1	0	Median	177400000	72992000	104410000	0	0	0	0	0	0	0	0	0	177400000	72992000	104410000	55925	1436	52655	339657	458046	458046			1	
VNKDDIQKMNPPK	3	Acetyl (K)	1567.8028	0.8028271	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	0	2			By MS/MS		14	0							1					1		42.6	32.464	3	0.0027465	19601	160513_QHF_FH_JSI11Kac_4	68.034	50.753			0.7119	0.70162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7119	0.70162	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4669100	2777200	1891900	0	0	0	0	0	0	4669100	2777200	1891900	0	0	0	55926	1436	52656	339658	458047	458047	1398		1	
VNKDDIQKMNPPK	3	Acetyl (K);Oxidation (M)	1583.7977	0.79774172	1436	P35579	MYH9	Myosin-9	yes	yes	1	0	1	2				By MS/MS	14	0							1						1	29.073	20.823	3	0.00269	12715	160513_QHF_FH_JSI12Kac_4	61.212	46.859			0.7813	0.84525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7813	0.84525	NaN	1	0	Median	6677500	3575700	3101800	0	0	0	0	0	0	0	0	0	6677500	3575700	3101800	55927	1436	52656	339659	458048;458049	458048	1398	1093	2	
VNKHAFSGGR	1	Acetyl (K)	1113.5679	0.56794021	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	22.067	14.56	2;3	0.00082405	8818	160513_QHF_FH_JSI10Kac_6	70.488	57.91			0.81452	0.91574	30.054	6	0	Median	1.0412	0.91574	6.0469	2	0	Median	0.81452	0.97096	1.2684	2	0	Median	0.46278	0.44854	NaN	1	0	Median	0.7086	0.76748	NaN	1	0	Median	74625000	43874000	30752000	9145900	4203200	4942700	37560000	22089000	15471000	19115000	12682000	6433400	8803600	4899000	3904600	55928	1226	52657	339660;339661;339662;339663;339664;339665	458050;458051;458052;458053;458054;458055;458056;458057	458056	1109		8	
VNKPMELYYAPTK	2	Unmodified	1552.796	0.79595081	4275	Q99496	RNF2	E3 ubiquitin-protein ligase RING2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	44.04	43.92	3	7.0195E-05	38758	160511_QHF_FH_JSI11i_3	82.908	67.52			1.0021	0.97142	15.429	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95236	0.87101	NaN	1	0	Median	1.0544	1.0834	NaN	1	0	Median	376710000	183330000	193380000	0	0	0	0	0	0	92805000	41720000	51086000	283900000	141610000	142300000	55929	4275	52658	339666;339667	458058;458059;458060;458061	458059			4	
VNKPPYPK	2	Unmodified	941.53345	0.53345218	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	13.702	13.266	2;3	0.0016599	10686	160511_QHF_FH_JSI11i_3	63.48	59.123			0.97272	0.99355	6.6238	8	0	Median	1.3112	1.0428	1.1003	2	0	Median	0.8779	0.98797	4.0213	2	0	Median	1.0562	0.99355	1.8356	2	0	Median	0.88722	0.89016	4.4781	2	0	Median	5260100000	2488600000	2771400000	1102200000	414010000	688160000	875830000	448160000	427670000	1152100000	523820000	628320000	2129900000	1102600000	1027300000	55930	1039	52659	339668;339669;339670;339671;339672;339673;339674;339675	458062;458063;458064;458065;458066;458067;458068;458069;458070;458071;458072;458073;458074;458075;458076;458077;458078;458079;458080;458081;458082;458083;458084;458085;458086	458064			25	
VNLAELFK	1	Unmodified	932.53312	0.53311783	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.73	6.08	3	4	4					1	3	4	3	4	4	80.715	77.718	2	0.00064102	70381	160511_QHF_FH_JSI9i_2	101.54	54.475			1.0306	0.98164	15.748	15	0	Median	1.0611	0.90129	9.4616	4	0	Median	0.78356	0.95976	10.503	3	0	Median	1.1012	1.0776	10.392	4	0	Median	1.0463	1.1385	19.261	4	0	Median	6336500000	3039000000	3297600000	1165400000	542730000	622670000	1373500000	775760000	597760000	2203700000	939980000	1263700000	1593900000	780490000	813440000	55931	1335	52660	339676;339677;339678;339679;339680;339681;339682;339683;339684;339685;339686;339687;339688;339689;339690	458087;458088;458089;458090;458091;458092;458093;458094;458095;458096;458097;458098;458099;458100;458101;458102;458103;458104;458105;458106;458107;458108;458109;458110;458111;458112;458113;458114;458115	458103			29	
VNLAELFKGK	2	Unmodified	1117.6495	0.64954457	1335	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			69.47	67.998	3	0.026954	56942	160511_QHF_FH_JSI10i_3	36.514	26.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6331900	6331900	0	0	0	0	6331900	6331900	0	0	0	0	0	0	0	55932	1335	52661	339691	458116	458116			1	
VNLDALTQHLDK	1	Unmodified	1365.7252	0.72522871	3662	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		61.79	61.014	3	7.4394E-05	53191	160511_QHF_FH_JSI11i_2	73.219	64.914			1.0142	1.2321	49.138	3	1	Plateau	0.60897	0.52091	NaN	1	1	Median	1.0142	1.2321	NaN	1	0	Median	1.1335	1.2077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	127400000	67235000	60167000	37808000	24221000	13588000	51022000	25364000	25658000	38572000	17650000	20922000	0	0	0	55933	3662	52662	339692;339693;339694	458117;458118;458119;458120	458119			4	
VNLDSEQAVK	1	Unmodified	1101.5666	0.5666028	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	26.998	26.647	2	0.024373	23592	160511_QHF_FH_JSI12i_1	40.994	5.3418			0.86133	1.1206	15.802	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.82109	0.94955	NaN	1	0	Median	0.86133	0.83583	NaN	1	0	Median	1.0918	1.1444	NaN	1	0	Median	602610000	336450000	266160000	0	0	0	202610000	117320000	85291000	167630000	94591000	73035000	232370000	124540000	107830000	55934	2618	52663	339695;339696;339697	458121;458122	458121			2	
VNLEESSGVENSPAGARPK	1	Unmodified	1939.9599	0.95993268	3785	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.2	0.748	1	2	2							1		2	2	32.51	32.09	3	8.4428E-25	28022	160511_QHF_FH_JSI11i_3	177.12	163.33			0.99803	0.9614	8.2403	5	0	Median	1.2135	1.0328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93988	0.92045	6.1568	2	0	Median	0.94979	0.98099	11.731	2	0	Median	404460000	199670000	204800000	82135000	37185000	44950000	0	0	0	223340000	112490000	110850000	98989000	49990000	48999000	55935	3785	52664	339698;339699;339700;339701;339702	458123;458124;458125;458126;458127;458128;458129	458124			6	
VNLEVIK	1	Unmodified	813.496	0.49600404	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.234	44.74	2	0.049097	38455	160511_QHF_FH_JSI11i_2	47.849	9.0569			0.51036	0.51099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51036	0.51099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	119470000	80919000	38554000	0	0	0	0	0	0	119470000	80919000	38554000	0	0	0	55936	3463	52665	339703	458130	458130			1	
VNLEVIKPWITK	2	Unmodified	1438.8548	0.85478632	3463	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							1	3	2	2	79.414	79.093	3	3.4749E-08	65184	160511_QHF_FH_JSI9i_3	114.72	88.591			0.81522	0.83343	5.6565	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.61149	0.75273	NaN	1	1	Median	0.85983	0.81181	NaN	1	1	Median	0.81522	0.84084	NaN	1	1	Median	777690000	382280000	395410000	0	0	0	14490000	9475600	5014100	280280000	142180000	138100000	482910000	230620000	252300000	55937	3463	52666	339704;339705;339706;339707;339708;339709;339710;339711	458131;458132;458133;458134;458135;458136;458137;458138	458135			8	
VNLFILGK	1	Unmodified	902.55894	0.55893865	2341	Q13017	ARHGAP5	Rho GTPase-activating protein 5	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	80.955	71.577	2	0.021154	39338	160513_QHF_FH_JSI11Kac_6	56.122	25.51			1.2232	1.2363	21.754	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.06	NaN	1	0	Median	1.338	1.4419	NaN	1	0	Median	23359000	10664000	12695000	0	0	0	0	0	0	17492000	8363000	9128900	5867200	2301500	3565700	55938	2341	52667	339712;339713	458139	458139			1	
VNLFPGLSPSALK	1	Unmodified	1341.7656	0.76563696	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	87.343	86.713	2	4.1101E-05	77238	160511_QHF_FH_JSI11i_3	114.83	114.83			1.0401	0.99821	16.427	8	0	Median	1.2662	1.0561	14.378	2	0	Median	0.81495	0.94678	19.848	2	0	Median	1.0239	0.98139	8.8093	2	0	Median	0.87311	0.91291	31.285	2	0	Median	582640000	295640000	287000000	81655000	40544000	41111000	90894000	51744000	39149000	155650000	72134000	83514000	254440000	131210000	123230000	55939	4581	52668	339714;339715;339716;339717;339718;339719;339720;339721	458140;458141;458142;458143;458144;458145;458146;458147;458148;458149;458150;458151;458152;458153;458154;458155;458156;458157;458158	458141			19	
VNLFTDFDK	1	Unmodified	1097.5393	0.53932542	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.32	4	4	1				1	4		3	5	3	3	74.266	70.009	2	0.00019186	64411	160511_QHF_FH_JSI10i_1	85.676	60.753			0.46041	0.49433	43.577	14	5	Linear	0.59697	0.50894	43.084	3	1	Plateau	0.90119	1.071	50.963	5	2	Median	0.58455	0.57586	60.837	3	1	Plateau	0.74813	0.82514	23.83	3	1	Plateau	4091700000	2836400000	1255300000	867670000	560710000	306970000	825730000	560880000	264850000	1551800000	1155500000	396320000	846510000	559300000	287210000	55940	1867	52669	339722;339723;339724;339725;339726;339727;339728;339729;339730;339731;339732;339733;339734;339735	458159;458160;458161;458162;458163;458164;458165;458166;458167;458168;458169;458170;458171;458172;458173;458174;458175	458166			17	
VNLGAFR	0	Unmodified	775.43407	0.43407249	3905	Q92905	COPS5	COP9 signalosome complex subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	40.917	40.073	2	0.010511	33430	160511_QHF_FH_JSI10i_3	74.517	37.488			0.95416	0.95158	14.254	5	0	Median	1.4323	1.1715	NaN	1	0	Median	0.86768	1.033	11.607	2	0	Median	0.98564	0.91718	NaN	1	0	Median	0.81534	0.83253	NaN	1	0	Median	814130000	381230000	432900000	346050000	127290000	218770000	268630000	142900000	125730000	102100000	57330000	44774000	97344000	53716000	43628000	55941	3905	52670	339736;339737;339738;339739;339740	458176;458177;458178;458179;458180	458176			5	
VNLGVGAYR	0	Unmodified	947.51886	0.51886475	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			40.216	38.711	2	0.0025864	32339	160511_QHF_FH_JSI10i_3	73.616	53.334			0.89093	1.0419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.89093	1.0419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	286920000	147460000	139460000	0	0	0	286920000	147460000	139460000	0	0	0	0	0	0	55942	1111	52671	339741	458181	458181			1	
VNLLQIVR	0	Unmodified	953.6022	0.60220045	526	O75438	NDUFB1	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	72.477	71.672	2	0.0025673	59098	160511_QHF_FH_JSI9i_3	79.116	53.379			0.88673	0.90423	10.95	6	0	Median	0.98812	0.80197	14.075	2	0	Median	0.78124	0.95223	7.1502	2	0	Median	1.0227	0.94805	NaN	1	0	Median	0.89495	0.90318	NaN	1	0	Median	386290000	193260000	193030000	119830000	60346000	59484000	112820000	58331000	54486000	78125000	34993000	43132000	75514000	39590000	35924000	55943	526	52672	339742;339743;339744;339745;339746;339747	458182;458183;458184;458185;458186;458187;458188;458189;458190;458191;458192	458187			11	
VNLLSFTGSTQVGK	1	Unmodified	1449.7827	0.78274359	1659	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.43	2	5	8						2	4	4	6	3	75.339	73.575	2;3	2.1593E-21	64323	160511_QHF_FH_JSI12i_3	174.84	160.38			0.94465	0.9363	20.133	16	1	Median	1.2097	1.0315	35.021	4	0	Median	0.79702	0.92998	19.768	4	0	Median	0.97914	0.93406	10.454	5	1	Median	0.87323	0.88786	18.908	3	0	Median	2733800000	1362900000	1370900000	197410000	87757000	109650000	288700000	154730000	133960000	734570000	339370000	395200000	1513200000	781060000	732110000	55944	1659	52673	339748;339749;339750;339751;339752;339753;339754;339755;339756;339757;339758;339759;339760;339761;339762;339763;339764	458193;458194;458195;458196;458197;458198;458199;458200;458201;458202;458203;458204;458205;458206;458207;458208;458209;458210;458211;458212;458213;458214;458215;458216;458217;458218;458219;458220;458221	458221			28	
VNLLYSR	0	Unmodified	863.4865	0.48650199	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.37		4	3				2	3	3	3	4	4	4	44.201	38.539	2	0.009364	32744	160511_QHF_FH_JSI12i_3	79.469	50.13			1.0684	1.1175	25.612	15	0	Median	1.5665	1.308	47.265	3	0	Median	0.88049	1.0527	6.9371	4	0	Median	1.1607	1.0393	11.16	4	0	Linear	1.0341	1.1241	12.283	4	0	Median	5093400000	2342500000	2750900000	864110000	307690000	556420000	777510000	407970000	369540000	1702700000	766140000	936540000	1749100000	860680000	888430000	55945	2340	52674	339765;339766;339767;339768;339769;339770;339771;339772;339773;339774;339775;339776;339777;339778;339779	458222;458223;458224;458225;458226;458227;458228;458229;458230;458231;458232	458232			11	
VNLMQHMK	1	Unmodified	999.49939	0.49939163	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	25.019	24.994	2	0.015766	20744	160511_QHF_FH_JSI12i_3	48.756	31.37			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55946	5034	52675	339780	458233	458233			1	
VNLNHEVSNEDVLTK	1	Unmodified	1709.8584	0.85842773	5138	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	42.091	41.98	3	5.9364E-05	35855	160511_QHF_FH_JSI12i_3	83.54	71.926			1.0769	1.0641	3.4805	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1242	1.0382	NaN	1	0	Median	1.0317	1.0906	NaN	1	0	Median	99503000	39677000	59826000	0	0	0	0	0	0	41054000	18695000	22359000	58450000	20983000	37467000	55947	5138	52676	339781;339782	458234;458235	458235			2	
VNLQNNPGAMEHFHMK	1	Unmodified	1865.8665	0.86650677	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		5	15						5	6	7	5	7	47.36	44.942	2;3;4	1.0252E-30	38170	160511_QHF_FH_JSI12i_3	154.69	139.54			1.0471	0.99111	23.971	21	3	Median	1.2454	1.0046	3.9142	5	0	Median	0.7486	0.90377	23.961	6	1	Median	1.0758	0.99111	11.79	5	0	Median	0.91626	0.99243	37.552	5	2	Median	8245200000	4274300000	3970900000	1058500000	458140000	600390000	2221100000	1188000000	1033100000	2760900000	1430600000	1330300000	2204700000	1197500000	1007200000	55948	1741	52677	339783;339784;339785;339786;339787;339788;339789;339790;339791;339792;339793;339794;339795;339796;339797;339798;339799;339800;339801;339802;339803;339804;339805;339806;339807	458236;458237;458238;458239;458240;458241;458242;458243;458244;458245;458246;458247;458248;458249;458250;458251;458252;458253;458254;458255;458256;458257;458258;458259;458260;458261;458262;458263;458264;458265;458266;458267;458268;458269;458270;458271;458272;458273;458274;458275;458276;458277;458278;458279;458280;458281;458282;458283;458284;458285;458286	458276			50	
VNLQNNPGAMEHFHMK	1	Oxidation (M)	1881.8614	0.86142139	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			15							3	4	3	5	34.924	34.164	3;4	8.3606E-06	28522	160511_QHF_FH_JSI10i_3	83.37	63.322			0.99548	1.0096	8.3196	12	7	Median	1.3379	1.0872	3.1019	3	1	Plateau	0.83492	1.007	7.4283	3	0	Median	1.05	0.98988	3.1587	2	2	Median	0.9503	0.94313	6.3747	4	4	Median	1373600000	652170000	721460000	356790000	165160000	191630000	421730000	223060000	198670000	237800000	88423000	149370000	357310000	175530000	181790000	55949	1741	52677	339808;339809;339810;339811;339812;339813;339814;339815;339816;339817;339818;339819;339820;339821;339822	458287;458288;458289;458290;458291;458292;458293;458294;458295;458296;458297;458298;458299;458300;458301;458302;458303;458304;458305;458306;458307	458298		1428;1429	21	
VNLQNNPGAMEHFHMK	1	2 Oxidation (M)	1897.8563	0.85633601	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	2	0	By MS/MS				3	0			1							1				25.617	24.278	4	0.01421	19485	160511_QHF_FH_JSI9i_3	35.329	31.061			1.3217	1.0909	NaN	1	0	Median	1.3217	1.0909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46717000	25133000	21584000	46717000	25133000	21584000	0	0	0	0	0	0	0	0	0	55950	1741	52677	339823	458308	458308		1428;1429	0	
VNLQNNPGAMEHFHMKLFR	1	Acetyl (K)	2324.1307	0.13066038	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		76.762	68.93	4	1.899E-09	38024	160513_QHF_FH_JSI10Kac_6	107.57	99.859			0.2952	0.31232	233.41	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3655	1.627	NaN	1	0	Median	0.063817	0.059952	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	354870000	219420000	135450000	0	0	0	210560000	78015000	132540000	144310000	141400000	2908700	0	0	0	55951	1741	52678	339824;339825	458309;458310	458310	1756		2	
VNLSAAQTLR	0	Unmodified	1071.6037	0.60365701	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		39.846	39.266	2	0.0093585	34274	160511_QHF_FH_JSI9i_2	49.06	33.679			1.131	1.0002	4.7612	3	0	Plateau	1.131	0.97652	NaN	1	0	Median	0.86227	1.0002	NaN	1	0	Median	1.0984	1.0704	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	473410000	236750000	236660000	265680000	129550000	136140000	103310000	58462000	44848000	104410000	48744000	55670000	0	0	0	55952	4445	52679	339826;339827;339828	458311	458311			1	
VNLTGTIQLLEIMK	1	Unmodified	1571.8957	0.89566486	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.77	101.78	2	3.126E-07	90868	160511_QHF_FH_JSI11i_3	90.793	54.459			1.1666	1.1911	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1666	1.1911	NaN	1	0	Median	250080000	117770000	132310000	0	0	0	0	0	0	0	0	0	250080000	117770000	132310000	55953	2533	52680	339829;339830	458312;458313;458314	458312			3	
VNLVSGHVK	1	Unmodified	951.55016	0.55016488	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		19.749	19.749	2	0.055831	16492	160511_QHF_FH_JSI11i_3	43.083	21.929			3.1445	2.9223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1445	2.9223	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31513000	9218600	22294000	0	0	0	0	0	0	31513000	9218600	22294000	0	0	0	55954	1970	52681	339831	458315	458315			1	
VNMPPAVDPAEFFVLMER	0	Unmodified	2061.0064	0.0063542914	4550	Q9BYN8	MRPS26	28S ribosomal protein S26, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	102.47	102.35	2;3	1.6842E-05	88296	160511_QHF_FH_JSI12i_2	117.92	96.157			1.5579	1.5306	56.417	2	1	Median	2.6764	2.281	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90682	1.0271	NaN	1	1	Median	115340000	43653000	71683000	66567000	18231000	48336000	0	0	0	0	0	0	48769000	25422000	23347000	55955	4550	52682	339832;339833;339834	458316;458317;458318	458316			3	
VNNADDFPNLFR	0	Unmodified	1420.6735	0.67352749	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.014	71.128	2	0.00031146	62271	160511_QHF_FH_JSI11i_2	87.298	76.775			1.0347	1.0671	4.6744	4	0	Median	1.2684	1.0773	NaN	1	0	Median	0.85642	1.0569	NaN	1	0	Median	1.0121	1.0118	NaN	1	0	Median	1.0579	1.1326	NaN	1	0	Median	163730000	78230000	85496000	29030000	14794000	14235000	40075000	18953000	21121000	52819000	25057000	27762000	41803000	19426000	22378000	55956	2348	52683	339835;339836;339837;339838	458319;458320;458321;458322;458323;458324	458322			6	
VNNASLIGLGYTQTLRPGVK	1	Unmodified	2100.1691	0.1691376	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	3	3	3	1	72.306	68.396	3	2.8444E-14	37048	160513_QHF_FH_JSI10Kac_6	132.45	116.51			0.89277	0.87308	11.001	10	0	Median	1.0718	0.86388	11.955	3	0	Plateau	0.82938	1.0022	11.701	3	0	Median	0.90048	1.0163	9.265	3	0	Plateau	0.71126	0.76607	NaN	1	0	Median	796540000	410330000	386210000	194720000	96797000	97922000	442390000	244330000	198060000	136380000	57282000	79099000	23044000	11918000	11126000	55957	5499	52684	339839;339840;339841;339842;339843;339844;339845;339846;339847;339848	458325;458326;458327;458328;458329;458330;458331;458332;458333;458334;458335;458336;458337;458338;458339;458340	458340			16	
VNNFGSGLTALGLK	1	Unmodified	1389.7616	0.76161421	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	76.089	75.304	2	0.0001178	65306	160511_QHF_FH_JSI12i_3	125.74	87.654			1.1382	1.0502	13.56	4	0	Median	1.2361	1.0271	NaN	1	0	Median	0.82642	0.93502	NaN	1	0	Median	1.3614	1.2913	NaN	1	0	Median	1.048	1.0739	NaN	1	0	Median	258680000	120610000	138070000	16421000	8998600	7422800	23228000	12931000	10297000	106970000	47372000	59601000	112060000	51313000	60746000	55958	418	52685	339849;339850;339851;339852	458341;458342;458343;458344	458344			4	
VNNFGSGLTALGLKPK	2	Unmodified	1614.9093	0.90934108	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	66.893	65.941	2;3	1.348E-06	54225	160511_QHF_FH_JSI9i_3	119.46	112.73			0.82035	0.73055	15.636	5	5	Median	0.82035	0.67819	NaN	1	1	Median	0.62168	0.72427	1.2218	2	2	Median	1.0758	0.98772	NaN	1	1	Median	0.88429	0.87031	NaN	1	1	Median	1091300000	622440000	468900000	321350000	172970000	148380000	287880000	187040000	100840000	355380000	189610000	165770000	126720000	72821000	53903000	55959	418	52686	339853;339854;339855;339856;339857	458345;458346;458347;458348;458349	458348			5	
VNNSSLIGLGYTQTLK	1	Unmodified	1706.9203	0.9202997	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.04	6.56	6	4	3				3	8	1	5	5	8	7	73.592	68.255	2;3	4.0682E-40	61346	160511_QHF_FH_JSI9i_2	203.85	188.65			1.0393	1.0169	14.621	25	4	Median	1.0949	0.91294	14.823	5	1	Median	0.88333	1.041	10.486	5	0	Median	1.1285	1.0887	7.8457	8	1	Median	0.96869	1.0048	16.238	7	2	Median	2649400000	1369100000	1280300000	411960000	210480000	201480000	537800000	306750000	231050000	1050600000	519360000	531220000	649040000	332470000	316570000	55960	1195	52687	339858;339859;339860;339861;339862;339863;339864;339865;339866;339867;339868;339869;339870;339871;339872;339873;339874;339875;339876;339877;339878;339879;339880;339881;339882	458350;458351;458352;458353;458354;458355;458356;458357;458358;458359;458360;458361;458362;458363;458364;458365;458366;458367;458368;458369;458370;458371;458372;458373;458374;458375;458376;458377;458378;458379;458380;458381;458382;458383	458371			34	
VNNSSLIGLGYTQTLKPGIK	2	Unmodified	2102.1736	0.17355427	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.43	5.55	2	6	14						6	8	8	8	4	72.256	69.635	2;3;4	8.3484E-24	57902	160511_QHF_FH_JSI9i_3	208.51	205.56			0.97766	0.932	21.106	26	7	Median	1.0696	0.89808	16.805	7	3	Median	0.87907	1.0185	11.994	7	2	Median	0.95659	0.93765	30.21	8	2	Median	0.84092	0.88876	22.494	4	0	Median	34343000000	18366000000	15977000000	8487800000	3711400000	4776400000	9991300000	5766700000	4224600000	13104000000	7319200000	5785100000	2759600000	1568200000	1191400000	55961	1195	52688	339883;339884;339885;339886;339887;339888;339889;339890;339891;339892;339893;339894;339895;339896;339897;339898;339899;339900;339901;339902;339903;339904;339905;339906;339907;339908;339909;339910	458384;458385;458386;458387;458388;458389;458390;458391;458392;458393;458394;458395;458396;458397;458398;458399;458400;458401;458402;458403;458404;458405;458406;458407;458408;458409;458410;458411;458412;458413;458414;458415;458416;458417;458418;458419;458420;458421;458422;458423;458424;458425;458426;458427;458428;458429;458430;458431;458432;458433;458434;458435;458436;458437;458438;458439;458440;458441;458442;458443;458444	458414			61	
VNNSSLIGLGYTQTLKPGIK	2	Acetyl (K)	2144.1841	0.18411896	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	0	0	1			By MS/MS		15	0								2				2		84.304	73.778	2;3	9.0385E-05	38917	160513_QHF_FH_JSI11Kac_5	70.414	64.96			0.38421	0.3813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38421	0.3813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9539700	7048000	2491700	0	0	0	0	0	0	9539700	7048000	2491700	0	0	0	55962	1195	52688	339911;339912	458445;458446;458447	458445	1066		3	
VNNSSLIGVGYTQTLRPGVK	1	Unmodified	2102.1484	0.14840216	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.36		4	5					3	3	4	5	4	2	65.328	60.695	2;3	2.5491E-19	33148	160513_QHF_FH_JSI10Kac_6	145.9	123.46			0.91539	0.90606	14.153	14	0	Median	1.0917	0.90606	5.7466	4	0	Median	0.80573	0.98212	8.7738	4	0	Median	0.91264	0.91063	18.663	4	0	Linear	0.73028	0.76428	19.864	2	0	Median	2799700000	1469800000	1329900000	804610000	383140000	421470000	1427700000	781170000	646560000	453850000	244200000	209650000	113540000	61332000	52211000	55963	1570	52689	339913;339914;339915;339916;339917;339918;339919;339920;339921;339922;339923;339924;339925;339926;339927	458448;458449;458450;458451;458452;458453;458454;458455;458456;458457;458458;458459;458460;458461;458462;458463;458464;458465;458466;458467;458468;458469;458470;458471;458472;458473;458474;458475;458476	458475			29	
VNNSTGTSEDPSLQR	0	Unmodified	1603.7438	0.7437919	5310	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.9	17.415	2	1.5052E-06	14920	160511_QHF_FH_JSI12i_1	132.59	128.29			0.93598	0.97378	5.6899	4	0	Median	1.2476	1.0069	NaN	1	0	Median	0.84396	0.99398	NaN	1	0	Median	0.94713	0.88736	NaN	1	0	Median	0.92496	0.95398	NaN	1	0	Median	226530000	113960000	112570000	59342000	29136000	30205000	46548000	25034000	21515000	49709000	22916000	26793000	70928000	36874000	34055000	55964	5310	52690	339928;339929;339930;339931	458477;458478;458479;458480;458481;458482;458483;458484	458480			8	
VNNSTMLGASGDYADFQYLK	1	Unmodified	2193.0048	0.0048339665	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.487	8	5								3	4	3	3	80.47	79.885	2;3	7.5828E-83	73020	160511_QHF_FH_JSI12i_1	247.29	226.63			1.1296	1.0232	10.631	13	3	Linear	1.2351	1.0071	11.502	3	0	Plateau	0.89892	1.0588	2.0115	4	2	Median	1.0245	0.98196	11.024	3	1	Median	0.98326	1.0518	16.151	3	0	Plateau	2518500000	1159100000	1359400000	534050000	235290000	298750000	774960000	368420000	406540000	594610000	233760000	360850000	614890000	321630000	293260000	55965	1301	52691	339932;339933;339934;339935;339936;339937;339938;339939;339940;339941;339942;339943;339944	458485;458486;458487;458488;458489;458490;458491;458492;458493;458494;458495;458496;458497;458498;458499;458500;458501;458502;458503;458504;458505;458506;458507;458508;458509;458510;458511;458512;458513	458493			28	
VNNSTMLGASGDYADFQYLK	1	Oxidation (M)	2208.9997	0.99974859	1301	P28070	PSMB4	Proteasome subunit beta type-4	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	71.057	70.542	2	4.7906E-17	64144	160511_QHF_FH_JSI11i_1	178.07	164.04			0.99698	1.1237	7.9384	3	2	Plateau	1.2532	1.0077	NaN	1	1	Median	0.99698	1.1237	NaN	1	0	Median	0.99231	0.96281	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	68356000	30517000	37839000	19980000	7813100	12167000	30154000	16258000	13897000	18222000	6446200	11775000	0	0	0	55966	1301	52691	339945;339946;339947;339948;339949	458514;458515;458516;458517;458518;458519;458520;458521	458514		953	8	
VNNVNGNQVGHLK	1	Unmodified	1391.727	0.72696004	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2.67	0.471		1	2							1		1	1	16.412	16.437	3	1.7194E-05	13127	160511_QHF_FH_JSI12i_3	91.784	87.797			1.0421	1.0308	1.9439	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1036	1.0451	NaN	1	0	Median	0.98396	1.0167	NaN	1	0	Median	205600000	110270000	95326000	0	0	0	0	0	0	106670000	58581000	48087000	98927000	51688000	47239000	55967	2540	52692	339950;339951;339952	458522;458523;458524	458524			3	
VNPAAALEELEK	1	Unmodified	1282.6769	0.67688153	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	77.571	76.347	2	0.00085835	66952	160511_QHF_FH_JSI11i_2	69.672	47.586			0.88209	0.95123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88209	0.95123	NaN	1	1	Median	26850000	13916000	12934000	0	0	0	0	0	0	0	0	0	26850000	13916000	12934000	55968	4472	52693	339953;339954;339955	458525;458526;458527	458527			3	
VNPALAELNLR	0	Unmodified	1208.6877	0.68772099	1029	P13489	RNH1	Ribonuclease inhibitor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	2	6	4							2	3	4	3	63.78	63.03	2;3	3.8168E-06	55946	160511_QHF_FH_JSI10i_2	111.61	100.01			1.0238	1.0743	26.506	11	2	Median	0.88724	0.73823	53.053	2	1	Median	0.81241	0.95165	8.8335	3	0	Median	1.1524	1.1562	15.872	4	0	Median	1.0809	1.1593	7.9078	2	1	Median	2757300000	1336100000	1421300000	424950000	208790000	216160000	575500000	313630000	261870000	1025100000	493730000	531360000	731800000	319910000	411890000	55969	1029	52694	339956;339957;339958;339959;339960;339961;339962;339963;339964;339965;339966;339967	458528;458529;458530;458531;458532;458533;458534;458535;458536;458537;458538;458539;458540;458541;458542;458543;458544	458543			17	
VNPCIGGVILFHETLYQK	1	Unmodified	2087.0874	0.087381804	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.22	6.08		7	6						5	3	5	5	5	85.951	82.942	2;3	1.1735E-16	42409	160513_QHF_FH_JSI10Kac_6	171.76	136.81			0.86967	0.84624	19.491	15	6	Median	0.99077	0.84624	12.184	3	1	Median	0.84141	0.99049	12.082	4	1	Median	0.77053	0.75342	15.774	4	2	Median	0.97492	1.048	23.369	4	2	Median	5014600000	2544400000	2470100000	690990000	351280000	339710000	1451300000	779150000	672180000	1485800000	801960000	683870000	1386400000	612050000	774390000	55970	803	52695	339968;339969;339970;339971;339972;339973;339974;339975;339976;339977;339978;339979;339980;339981;339982;339983;339984;339985	458545;458546;458547;458548;458549;458550;458551;458552;458553;458554;458555;458556;458557;458558;458559;458560;458561;458562;458563;458564;458565;458566;458567;458568;458569;458570;458571;458572;458573;458574;458575;458576;458577;458578	458578			34	
VNPDTGYINYDQLEENAR	0	Unmodified	2109.9603	0.96032661	1414	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	63.631	63.046	2;3	3.4163E-81	56076	160511_QHF_FH_JSI9i_1	240.2	228.94			0.98779	0.98307	12.988	6	1	Median	1.2198	1.0069	NaN	1	0	Median	0.9036	1.051	15.151	2	1	Median	0.97584	0.95981	NaN	1	0	Median	1.0251	1.0464	23.378	2	0	Median	785670000	373450000	412220000	155130000	69381000	85750000	271440000	142920000	128520000	137650000	59406000	78245000	221450000	101750000	119700000	55971	1414	52696	339986;339987;339988;339989;339990;339991	458579;458580;458581;458582;458583;458584;458585;458586;458587;458588	458588			9	
VNPFRPGDSEPPPAPGAQR	0	Unmodified	1987.9864	0.98642221	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.6	0.49		2	3							2	2	1		42.584	41.562	3	1.2267E-09	33907	160511_QHF_FH_JSI9i_3	120.29	109.82			0.81576	0.90832	22.409	5	1	Median	1.0783	0.9105	0.3393	2	0	Median	0.72944	0.86526	9.5783	2	1	Median	0.60321	0.54586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	795150000	407900000	387250000	522700000	261640000	261060000	232730000	123270000	109470000	39716000	22999000	16717000	0	0	0	55972	2723	52697	339992;339993;339994;339995;339996	458589;458590;458591;458592;458593;458594;458595;458596;458597	458593			9	
VNPHSLPDPEVNEQSSSK	1	Unmodified	1962.9283	0.9282982	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	1	2	3	34.582	33.883	3	7.0052E-09	29648	160511_QHF_FH_JSI10i_2	130.01	101.92			0.98187	1.0754	20.099	7	3	Median	1.2166	1.0178	35.421	2	2	Median	0.98187	1.205	NaN	1	0	Median	0.98125	0.94088	18.899	2	0	Median	1.0202	1.0951	18.223	2	1	Median	505120000	250190000	254930000	96662000	45018000	51644000	66158000	37362000	28796000	198830000	100540000	98281000	143480000	67267000	76211000	55973	4288	52698	339997;339998;339999;340000;340001;340002;340003;340004	458598;458599;458600;458601;458602;458603;458604;458605;458606;458607;458608;458609;458610;458611	458608			14	
VNPILGPQMFQPILPYVFK	1	Unmodified	2200.2119	0.21185404	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	2	3	102.74	102.67	2;3	1.503E-10	91837	160511_QHF_FH_JSI11i_3	160.15	149.52			1.1146	1.1154	25.417	7	1	Median	1.6579	1.3926	NaN	1	0	Median	0.91805	1.0807	NaN	1	0	Median	0.91687	0.86072	33.761	2	0	Median	1.4551	1.1471	16.399	3	1	Plateau	332710000	152370000	180340000	22836000	9090800	13745000	16552000	7176400	9375600	84056000	46092000	37965000	209260000	90007000	119260000	55974	5323	52699	340005;340006;340007;340008;340009;340010;340011	458612;458613;458614;458615;458616;458617;458618	458612			7	
VNPIQGLASK	1	Unmodified	1025.5869	0.58694431	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.46	4	4	4				2	2		3	3	5	5	47.272	43.862	2	9.9695E-10	38374	160511_QHF_FH_JSI9i_2	136.57	114.44			1.038	1.1127	8.2297	15	0	Median	1.3622	1.1402	3.4444	2	0	Median	0.92203	1.0946	1.4908	3	0	Median	1.0647	1.113	6.4578	5	0	Median	0.96696	1.0174	12.733	5	0	Median	6802800000	3529900000	3272900000	1066800000	444950000	621840000	1686100000	951600000	734510000	2363000000	1284700000	1078300000	1686900000	848660000	838250000	55975	1026	52700	340012;340013;340014;340015;340016;340017;340018;340019;340020;340021;340022;340023;340024;340025;340026;340027	458619;458620;458621;458622;458623;458624;458625;458626;458627;458628;458629;458630;458631;458632;458633;458634;458635;458636;458637;458638;458639;458640;458641;458642;458643;458644;458645;458646;458647;458648;458649	458637			30	
VNPIQGLASKWDYEK	2	Unmodified	1746.8941	0.89408495	1026	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS			3	0			2							1	1			73.536	72.078	3	0.00095924	60167	160511_QHF_FH_JSI10i_3	56.599	44.453			0.45485	0.43999	70.081	2	0	Median	0.32612	0.26806	NaN	1	0	Median	0.6344	0.72221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	78528000	48511000	30017000	42409000	29624000	12785000	36120000	18887000	17232000	0	0	0	0	0	0	55976	1026	52701	340028;340029	458650	458650			1	
VNPLSLVEIILHVVR	0	Unmodified	1700.0349	0.034875949	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	101.78	93.625	2;3	1.3549E-44	53493	160513_QHF_FH_JSI9Kac_6	193.77	179.68			0.96093	1.1024	16.363	6	6	Median	1.3163	1.1329	NaN	1	1	Median	0.95358	1.1089	4.691	2	2	Median	0.79969	0.76698	NaN	1	1	Median	1.0496	1.1192	11.455	2	2	Median	6073100000	3146300000	2926800000	1894000000	844470000	1049600000	3996300000	2205500000	1790800000	110270000	62856000	47416000	72503000	33511000	38992000	55977	5441	52702	340030;340031;340032;340033;340034;340035;340036;340037	458651;458652;458653;458654;458655;458656;458657;458658	458653			8	
VNPQGPGPEEK	1	Unmodified	1150.5619	0.56185177	1419	P35052	GPC1	Glypican-1;Secreted glypican-1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.892	12.469	2	1.6001E-05	9925	160511_QHF_FH_JSI9i_1	105.2	90.988			1.0019	1.0395	3.6054	4	0	Median	1.3353	1.0912	NaN	1	0	Median	0.87346	1.0602	NaN	1	0	Median	1.0495	1.0193	NaN	1	0	Median	0.95653	1.0095	NaN	1	0	Median	284410000	140220000	144180000	81106000	33872000	47235000	66517000	37943000	28573000	75190000	38873000	36317000	61595000	29535000	32060000	55978	1419	52703	340038;340039;340040;340041	458659;458660	458660			2	
VNPQISDEK	1	Unmodified	1028.5138	0.51383895	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		16.57	16.449	2	0.001492	13856	160511_QHF_FH_JSI11i_1	71.379	39.025			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55979	1273	52704	340042	458661	458661			1	
VNPQISDEKDEDEK	2	Unmodified	1644.7479	0.74787422	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	17.827	17.148	2;3	6.4966E-06	14726	160511_QHF_FH_JSI12i_1	119.32	99.219			1.4348	1.4665	24.877	3	2	Plateau	1.6575	1.3556	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7444	1.7788	27.303	2	2	Median	105250000	40982000	64271000	17152000	6854500	10297000	0	0	0	0	0	0	88100000	34127000	53973000	55980	1273	52705	340043;340044;340045;340046	458662;458663;458664;458665	458664			4	
VNPTVFFDIAVDGEPLGR	0	Unmodified	1944.9945	0.99452728	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.99	5	8	6						6	5	7	6	7	100.39	98.686	2;3	2.9706E-98	89382	160511_QHF_FH_JSI11i_2	256.52	225.63			1.0391	1.056	11.765	24	0	Median	1.2779	1.0448	4.6518	5	0	Median	0.91917	1.0359	8.1603	7	0	Median	1.0652	1.0605	13.19	6	0	Median	1.0132	1.116	16.599	6	0	Median	37835000000	18154000000	19681000000	5619600000	2479700000	3139900000	8896400000	4724100000	4172400000	10370000000	5012500000	5357900000	12949000000	5937900000	7010900000	55981	2040	52706	340047;340048;340049;340050;340051;340052;340053;340054;340055;340056;340057;340058;340059;340060;340061;340062;340063;340064;340065;340066;340067;340068;340069;340070;340071	458666;458667;458668;458669;458670;458671;458672;458673;458674;458675;458676;458677;458678;458679;458680;458681;458682;458683;458684;458685;458686;458687;458688;458689;458690;458691;458692;458693;458694;458695;458696;458697;458698;458699	458687			33	
VNPTVFFDIAVDGEPLGR	0	Acetyl (Protein N-term)	1987.0051	0.005091963	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.08	3.81	4	4	4						1	3	4	3	3	103.34	102.82	2	2.2044E-22	94293	160511_QHF_FH_JSI10i_1	278.45	256.9			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55982	2040	52706	340072;340073;340074;340075;340076;340077;340078;340079;340080;340081;340082;340083;340084	458700;458701;458702;458703;458704;458705;458706;458707;458708;458709;458710;458711;458712;458713	458705			14	
VNPVTALTLLEK	1	Unmodified	1296.7653	0.76530261	5513	Q9Y2D4	EXOC6B	Exocyst complex component 6B	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	93.943	93.596	2	0.010194	80867	160511_QHF_FH_JSI12i_3	47.971	42.01			0.85816	0.90278	45.357	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85816	0.90278	45.357	2	0	Median	42754000	21061000	21693000	0	0	0	0	0	0	0	0	0	42754000	21061000	21693000	55983	5513	52707	340085;340086	458714;458715	458714			2	
VNQAIWLLCTGAR	0	Unmodified	1500.7871	0.78711746	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12	5.76		2	4					7	9	6	5	6	5	79.638	72.477	2;3	1.1002E-50	39921	160513_QHF_FH_JSI10Kac_6	209.85	185.51			1.1826	1.2071	27.08	20	2	Median	1.4219	1.2061	15.903	5	1	Median	1.0705	1.2727	10.047	5	0	Median	0.83494	0.8147	13.53	6	1	Median	1.3518	1.4358	8.1223	4	0	Median	5740500000	2826200000	2914300000	539470000	218690000	320780000	2393000000	1187500000	1205600000	1642900000	903190000	739740000	1165100000	516870000	648200000	55984	1594	52708	340087;340088;340089;340090;340091;340092;340093;340094;340095;340096;340097;340098;340099;340100;340101;340102;340103;340104;340105;340106;340107;340108	458716;458717;458718;458719;458720;458721;458722;458723;458724;458725;458726;458727;458728;458729;458730;458731;458732;458733;458734;458735;458736;458737;458738;458739;458740;458741;458742;458743;458744;458745;458746;458747;458748;458749;458750	458749			35	
VNQELAGYTGGDVSFIK	1	Unmodified	1796.8945	0.89447888	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								3	2	1	2	69.613	69.04	2;3	3.6351E-22	62735	160511_QHF_FH_JSI11i_1	218.11	178.2			1.0123	0.93285	10.655	7	0	Median	1.1459	0.94046	5.1123	2	0	Median	0.7146	0.82737	10.985	2	0	Median	1.0951	1.0567	NaN	1	0	Median	0.95875	0.97808	6.6959	2	0	Median	896960000	486540000	410410000	230810000	121720000	109090000	259790000	150340000	109450000	158480000	87919000	70561000	247870000	126570000	121300000	55985	5645	52709	340109;340110;340111;340112;340113;340114;340115;340116	458751;458752;458753;458754;458755;458756;458757;458758;458759;458760;458761	458752			11	
VNQIGSVTESLQACK	1	Unmodified	1632.8141	0.81412007	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.31	12	8	8			5	6			5	12	10	12	53.906	50.42	2;3	2.5292E-34	45558	160511_QHF_FH_JSI11i_1	234.17	0			0.92852	1.14	33.224	38	7	Median	1.4021	1.1809	2.7295	5	0	Median	0.87289	1.0335	47.655	12	3	Median	0.82452	0.79142	14.505	10	2	Median	1.1838	1.2718	5.2668	11	2	Median	20724000000	10491000000	10233000000	1552600000	644680000	907970000	6863800000	3629400000	3234400000	7372600000	4046000000	3326600000	4934900000	2170500000	2764400000	55986	854	52710	340117;340118;340119;340120;340121;340122;340123;340124;340125;340126;340127;340128;340129;340130;340131;340132;340133;340134;340135;340136;340137;340138;340139;340140;340141;340142;340143;340144;340145;340146;340147;340148;340149;340150;340151;340152;340153;340154;340155	458762;458763;458764;458765;458766;458767;458768;458769;458770;458771;458772;458773;458774;458775;458776;458777;458778;458779;458780;458781;458782;458783;458784;458785;458786;458787;458788;458789;458790;458791;458792;458793;458794;458795;458796;458797;458798;458799;458800;458801;458802;458803;458804;458805;458806;458807;458808;458809;458810;458811;458812;458813;458814;458815;458816;458817;458818;458819;458820;458821;458822;458823;458824;458825;458826;458827;458828;458829;458830;458831;458832	458770			71	
VNQPASFAIR	0	Unmodified	1101.5931	0.59309232	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	39.967	39.376	2	0.00042695	34474	160511_QHF_FH_JSI11i_3	74.92	60.763			1.0182	1.0802	6.1126	8	0	Median	1.374	1.1511	NaN	1	0	Median	0.89704	1.0685	2.7681	2	0	Median	1.0352	1.0514	4.576	3	0	Median	1.0739	1.142	8.2613	2	0	Median	1480200000	721030000	759190000	231480000	100130000	131350000	339790000	186410000	153380000	575490000	270740000	304760000	333450000	163760000	169700000	55987	512	52711	340156;340157;340158;340159;340160;340161;340162;340163	458833;458834;458835;458836;458837;458838;458839;458840;458841;458842;458843;458844;458845;458846	458834			14	
VNQPASFAVSLNGAK	1	Unmodified	1501.7889	0.7888916	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.766	9	7	4							5	3	6	6	56.564	55.847	2;3	8.8547E-22	48533	160511_QHF_FH_JSI11i_2	180.2	162.33			0.895	0.88518	32.587	20	3	Median	0.96676	0.78274	40.997	5	2	Median	0.67656	0.78777	14.567	3	0	Median	0.97711	0.93987	35.161	6	1	Median	0.9409	1.0033	18.37	6	0	Median	3421400000	1939700000	1481700000	772710000	460420000	312290000	665440000	375330000	290110000	1149400000	639120000	510290000	833830000	464790000	369050000	55988	1192	52712	340164;340165;340166;340167;340168;340169;340170;340171;340172;340173;340174;340175;340176;340177;340178;340179;340180;340181;340182;340183	458847;458848;458849;458850;458851;458852;458853;458854;458855;458856;458857;458858;458859;458860;458861;458862;458863;458864;458865;458866;458867;458868;458869;458870;458871;458872	458869			26	
VNQQPNTSDK	1	Unmodified	1129.5364	0.53636531	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	5.5676	5.2765	2	6.2473E-11	2957	160511_QHF_FH_JSI9i_1	145.72	93.869			0.84132	0.84811	14.683	6	4	Median	1.3022	1.0655	NaN	1	0	Median	0.68489	0.81664	NaN	1	0	Median	0.94625	0.92481	10.477	2	2	Median	0.74058	0.7697	11.954	2	2	Median	1200300000	622580000	577750000	185260000	76059000	109200000	183630000	105230000	78400000	438880000	231940000	206940000	392560000	209350000	183210000	55989	1824	52713	340184;340185;340186;340187;340188;340189	458873;458874;458875;458876;458877;458878;458879;458880	458880			8	
VNQQPNTSDKK	2	Unmodified	1257.6313	0.63132832	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	5.3	5	2					2			2	1	3	3	5.0306	2.6047	2;3	5.208E-13	2519	160511_QHF_FH_JSI10i_1	146.69	131.54			1.064	1.0695	11.017	7	2	Median	1.6214	1.3375	NaN	1	1	Median	0.86272	1.0136	NaN	1	0	Median	1.0726	1.0412	3.7933	2	0	Median	1.064	1.1519	9.0856	3	1	Median	312860000	135060000	177800000	43865000	13391000	30474000	93239000	44863000	48375000	87212000	36058000	51154000	88543000	40744000	47799000	55990	1824	52714	340190;340191;340192;340193;340194;340195;340196;340197;340198	458881;458882;458883;458884;458885;458886;458887;458888;458889	458884			8	
VNQSALEAVTPSPSFQQR	0	Unmodified	1957.9858	0.9857535	5367	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.485	59.058	2	0.00019643	53573	160511_QHF_FH_JSI11i_1	92.939	68.086			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	55991	5367	52715	340199	458890	458890			1	
VNREIVSGMK	1	Unmodified	1131.607	0.60702783	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				19.483	18.282	3	0.00019623	14735	160511_QHF_FH_JSI9i_3	73.781	52.318			1.1161	0.91286	NaN	1	0	Median	1.1161	0.91286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	346030000	145910000	200120000	346030000	145910000	200120000	0	0	0	0	0	0	0	0	0	55992	1773	52716	340200	458891	458891			1	
VNRLDMYGEK	1	Unmodified	1223.5969	0.59685707	5535;1808	P53677;Q9Y2T2	AP3M2;AP3M1	AP-3 complex subunit mu-2;AP-3 complex subunit mu-1	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			5								2	2	1	23.945	23.622	2;3	0.0049882	19967	160511_QHF_FH_JSI11i_3	37.995	25.418			1.0938	1.1354	7.2679	4	2	Median	NaN	NaN	NaN	0	0	Median	1.0537	1.1941	NaN	1	1	Median	1.0938	1.0593	2.6715	2	1	Median	1.2079	1.2017	NaN	1	0	Median	505710000	261610000	244100000	0	0	0	129290000	64059000	65227000	299180000	160510000	138670000	77241000	37038000	40203000	55993	1808;5535	52717	340201;340202;340203;340204;340205	458892;458893;458894;458895	458892			4	
VNSDSGIPGLAASVLVVSHGAYMR	0	Unmodified	2399.2267	0.22672883	4915	Q9NQ88	TIGAR	Fructose-2,6-bisphosphatase TIGAR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.38	6.63		1	3						4	2	3	2	1	92.75	87.952	3	8.6032E-22	45945	160513_QHF_FH_JSI10Kac_6	120.31	105.06			0.96029	1.0687	20.693	7	1	Median	1.5952	1.3442	12.025	2	0	Median	0.89983	1.0567	1.5981	2	0	Median	1.1195	1.0625	24.553	2	1	Median	0.75867	0.80645	NaN	1	0	Median	590450000	306280000	284160000	136450000	68842000	67612000	266380000	146260000	120110000	133210000	64148000	69060000	54406000	27030000	27376000	55994	4915	52718	340206;340207;340208;340209;340210;340211;340212;340213	458896;458897;458898;458899;458900;458901;458902	458902			7	
VNSGLSSDPHFEEPGPMVR	0	Unmodified	2053.9527	0.95273882	1628	P48634	PRRC2A	Protein PRRC2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	53.822	52.707	3	0.029581	46551	160511_QHF_FH_JSI10i_2	30.416	20.628			1.0231	0.90481	37.221	3	2	Plateau	1.0231	0.90481	NaN	1	0	Median	1.175	1.4159	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8152	1.8943	NaN	1	1	Median	65701000	34314000	31387000	30684000	18108000	12576000	18399000	8580000	9818500	0	0	0	16618000	7625400	8992600	55995	1628	52719	340214;340215;340216	458903;458904;458905	458905			3	
VNSININQGSITFAGGPGR	0	Unmodified	1900.9755	0.97552317	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.829	1	1	2							1	1	1	1	66.636	66.034	2	7.3486E-24	58957	160511_QHF_FH_JSI11i_3	140.08	117.61			0.87048	0.8165	54.96	2	1	Median	1.4076	1.2043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53831	0.55357	NaN	1	1	Median	39913000	22791000	17123000	24742000	11549000	13194000	0	0	0	0	0	0	15171000	11242000	3929100	55996	100	52720	340217;340218;340219;340220	458906;458907;458908;458909;458910;458911	458906			6	
VNSLAPGPISGTEGLRR	0	Unmodified	1722.9377	0.9376811	5001	Q9NUI1	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				47.236	45.627	3	0.010268	37347	160511_QHF_FH_JSI9i_3	37.431	26.375			1.3883	1.1312	NaN	1	0	Median	1.3883	1.1312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60217000	30086000	30131000	60217000	30086000	30131000	0	0	0	0	0	0	0	0	0	55997	5001	52721	340221	458912;458913	458912			2	
VNSLGETAER	0	Unmodified	1074.5306	0.53055165	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			14.216	13.975	2	0.01368	11510	160511_QHF_FH_JSI10i_1	43.635	24.859			1.2222	1.4536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2222	1.4536	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124140000	59927000	64216000	0	0	0	124140000	59927000	64216000	0	0	0	0	0	0	55998	2470	52722	340222	458914;458915	458914			2	
VNSMVAYK	1	Unmodified	910.45824	0.45823833	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		5								2	1	2		23.418	22.621	2	0.0088887	19602	160511_QHF_FH_JSI10i_2	56.547	23.189			0.86402	0.87365	43.766	4	3	Median	1.4886	1.2441	15.523	2	2	Median	0.55955	0.68469	NaN	1	0	Median	0.53248	0.53447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	240830000	114090000	126750000	128170000	48762000	79408000	44206000	27260000	16946000	68458000	38065000	30393000	0	0	0	55999	2379	52723	340223;340224;340225;340226;340227	458916;458917;458918;458919;458920	458920			5	
VNSSLSDELRR	0	Unmodified	1274.6579	0.65787742	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			28.01	26.701	3	0.031078	22142	160511_QHF_FH_JSI10i_3	20.84	11.194			0.74574	0.85096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74574	0.85096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34786000	21003000	13783000	0	0	0	34786000	21003000	13783000	0	0	0	0	0	0	56000	5545	52724	340228	458921;458922	458922			2	
VNSVYVLVR	0	Unmodified	1047.6077	0.60767976	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	1	2	1	60.36	50.565	2	0.0093255	27688	160513_QHF_FH_JSI10Kac_6	58.955	34.8			1.0572	1.0438	20.059	6	0	Median	1.5487	1.3094	35.239	2	0	Median	0.91803	1.094	NaN	1	0	Median	1.0572	1.0222	5.5514	2	0	Median	0.95632	1.0248	NaN	1	0	Median	252860000	127480000	125370000	55372000	22686000	32686000	76477000	42278000	34199000	92334000	47186000	45149000	28675000	15333000	13342000	56001	3790	52725	340229;340230;340231;340232;340233;340234	458923;458924;458925;458926;458927;458928	458928			6	
VNSYWFITADHLIEK	1	Unmodified	1834.9254	0.92538508	4920	Q9NQE9	HINT3	Histidine triad nucleotide-binding protein 3	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				84.641	76.03	3	0.00014567	41775	160513_QHF_FH_JSI9Kac_6	109.38	81.885			1.3856	1.1779	NaN	1	1	Median	1.3856	1.1779	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98116000	47176000	50940000	98116000	47176000	50940000	0	0	0	0	0	0	0	0	0	56002	4920	52726	340235	458929	458929			1	
VNTDLGNDLYFVK	1	Unmodified	1496.7511	0.75110911	3778	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	74.4	73.905	2	6.1104E-05	67183	160511_QHF_FH_JSI11i_1	115.33	96.581			0.26702	0.27827	22.71	4	4	Median	0.37827	0.30938	NaN	1	1	Median	0.21313	0.25029	NaN	1	1	Median	0.21674	0.20957	NaN	1	1	Median	0.32895	0.35001	NaN	1	1	Median	954110000	778670000	175450000	128330000	90474000	37852000	234980000	203210000	31772000	302450000	254490000	47962000	288360000	230500000	57860000	56003	3778	52727	340236;340237;340238;340239	458930;458931;458932;458933	458930			4	
VNTFSALLLEPYKPPSAQ	1	Unmodified	1974.0462	0.046228496	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.46	2	8	4					1	1	2	3	7	4	94.401	92.984	2;3	2.5754E-07	83498	160511_QHF_FH_JSI9i_2	104.76	96.679			0.90772	1.0953	21.14	16	2	Linear	1.2484	1.0512	6.9096	2	0	Median	0.88473	1.0869	7.5498	3	0	Median	1.3095	1.242	22.797	7	1	Median	1.2049	1.324	28.606	4	1	Median	519920000	260680000	259230000	64569000	28885000	35683000	129420000	71345000	58078000	204030000	97269000	106760000	121900000	63183000	58712000	56004	357	52728	340240;340241;340242;340243;340244;340245;340246;340247;340248;340249;340250;340251;340252;340253;340254;340255	458934;458935;458936;458937;458938;458939;458940;458941;458942;458943;458944;458945;458946;458947;458948;458949;458950;458951;458952;458953;458954;458955;458956;458957;458958;458959;458960	458945			27	
VNTGFLMSSYK	1	Unmodified	1245.6064	0.60635913	3288	Q7Z6K5	ARPIN	Arpin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	58.338	57.675	2	2.7238E-05	51108	160511_QHF_FH_JSI11i_3	99.283	86.246			0.82348	0.80222	24.655	6	1	Median	0.9697	0.82873	NaN	1	1	Median	0.63792	0.77655	NaN	1	0	Median	0.82348	0.77846	16.426	2	0	Median	0.96055	1.0348	42.076	2	0	Median	347650000	178630000	169030000	37538000	18676000	18862000	54912000	37481000	17431000	120610000	62788000	57821000	134590000	59680000	74912000	56005	3288	52729	340256;340257;340258;340259;340260;340261	458961;458962;458963;458964;458965;458966;458967;458968	458962			8	
VNTHGIFTISTASMVEK	1	Oxidation (M)	1849.9244	0.9243988	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	2	3	2	3	61.906	55.461	3	0.00092133	45426	160511_QHF_FH_JSI9i_3	52.172	42.384			1.1572	1.0931	13.722	9	5	Median	1.4738	1.2301	20.447	2	0	Median	0.93173	1.0931	17.894	3	2	Median	1.2037	1.1559	9.4726	2	1	Median	1.0805	1.2005	13.985	2	2	Median	280420000	131770000	148660000	88955000	39107000	49848000	108440000	60277000	48161000	62772000	22968000	39804000	20258000	9414500	10844000	56006	3852	52730	340262;340263;340264;340265;340266;340267;340268;340269;340270;340271	458969;458970;458971;458972;458973;458974;458975;458976;458977;458978;458979	458972		2305	11	
VNTHGIFTISTASMVEK	1	Unmodified	1833.9295	0.92948418	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	3	3	3	2	69.815	65.736	2;3	1.3527E-07	35189	160513_QHF_FH_JSI11Kac_6	107.57	84.09			1.0518	0.96043	23.226	10	2	Median	1.1998	0.99298	3.4235	3	0	Median	0.63884	0.74854	13.083	3	0	Median	0.65512	0.61194	30.483	3	1	Plateau	1.2395	1.3168	NaN	1	1	Median	1927800000	1006800000	920980000	471760000	189470000	282280000	507890000	289140000	218760000	917860000	512150000	405710000	30292000	16060000	14231000	56007	3852	52730	340272;340273;340274;340275;340276;340277;340278;340279;340280;340281;340282	458980;458981;458982;458983;458984;458985;458986;458987;458988;458989;458990;458991;458992;458993;458994;458995;458996;458997;458998;458999	458989			20	
VNTKSQSAFDLK	2	Acetyl (K)	1378.7092	0.70924429	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	52.777	42.257	2	0.049493	24161	160513_QHF_FH_JSI12Kac_4	49.3	25.981			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2549100	0	2549100	0	0	0	0	0	0	0	0	0	2549100	0	2549100	56008	679	52731	340283	459000	459000	341		1	
VNTLEEGK	1	Unmodified	888.45526	0.45526144	2714	Q15818	NPTX1	Neuronal pentraxin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	11.498	11.181	2	0.019882	8880	160511_QHF_FH_JSI10i_1	46.334	7.558			1.3022	1.4177	27.126	2	0	Median	NaN	NaN	NaN	0	0	Median	1.465	1.7174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1575	1.1702	NaN	1	0	Median	237290000	117230000	120050000	0	0	0	122430000	62079000	60348000	0	0	0	114860000	55155000	59704000	56009	2714	52732	340284;340285	459001;459002	459002			2	
VNTLIRPDGEK	1	Unmodified	1240.6776	0.67755023	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.8	3	8	6				2	4	1	4	6	7	7	27.042	23.868	2;3	7.0958E-09	19815	160511_QHF_FH_JSI12i_3	136.48	77.799			0.88292	0.95068	20.291	24	0	Median	1.2319	1.0284	9.7876	4	0	Median	0.8629	1.0265	22.866	6	0	Median	0.8835	0.84229	6.7699	7	0	Median	0.85676	0.9294	22.995	7	0	Median	22470000000	10712000000	11758000000	2286800000	1086500000	1200300000	4545400000	2209100000	2336300000	8753700000	3834600000	4919200000	6884100000	3582200000	3301900000	56010	2017	52733	340286;340287;340288;340289;340290;340291;340292;340293;340294;340295;340296;340297;340298;340299;340300;340301;340302;340303;340304;340305;340306;340307;340308;340309	459003;459004;459005;459006;459007;459008;459009;459010;459011;459012;459013;459014;459015;459016;459017;459018;459019;459020;459021;459022;459023;459024;459025;459026;459027;459028;459029;459030;459031;459032;459033;459034;459035;459036;459037;459038;459039;459040;459041;459042;459043;459044;459045;459046;459047;459048	459048			46	
VNTLIRPDGEKK	2	Unmodified	1368.7725	0.77251325	2017	P62750	RPL23A	60S ribosomal protein L23a	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		18.507	17.743	3;4	0.0012464	14828	160511_QHF_FH_JSI11i_3	63.727	48.565			0.81595	0.82198	18.683	6	1	Median	1.0193	0.82198	7.241	2	0	Median	0.80655	0.94089	7.5321	2	0	Median	0.71247	0.66075	19.073	2	1	Median	NaN	NaN	NaN	0	0	Median	775780000	410000000	365780000	312730000	162850000	149880000	224390000	119160000	105230000	238660000	127990000	110670000	0	0	0	56011	2017	52734	340310;340311;340312;340313;340314;340315	459049;459050;459051;459052;459053	459050			5	
VNTPTTTVYR	0	Unmodified	1150.5982	0.59823728	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.81	2	4	2				3	1		2	2	4	4	30.104	26.458	2	4.4314E-06	22379	160511_QHF_FH_JSI12i_2	109.71	75.462			1.0377	1.0352	9.2767	12	2	Median	1.2307	1.0284	7.3129	2	0	Median	0.85232	1.0314	2.6482	2	0	Median	1.0377	1.0873	7.2379	4	1	Linear	1.032	1.1182	12.563	4	1	Median	4202600000	2051200000	2151400000	569730000	241420000	328310000	484660000	268120000	216530000	1618100000	809920000	808150000	1530100000	731710000	798380000	56012	1282	52735	340316;340317;340318;340319;340320;340321;340322;340323;340324;340325;340326;340327	459054;459055;459056;459057;459058;459059;459060;459061;459062;459063;459064;459065;459066;459067;459068;459069;459070	459057			17	
VNVAGLVLAGSADFK	1	Unmodified	1459.8035	0.80347903	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.84	4.21	1	8	8						2	4	4	7	4	92.858	91.85	2;3	4.0465E-11	82387	160511_QHF_FH_JSI10i_2	155.02	132.78			1.1348	1.0881	20.419	17	4	Median	1.2932	1.1211	13.089	4	1	Median	0.76498	0.91891	29.064	4	1	Median	1.2133	1.1323	16.524	5	1	Median	0.96002	0.99956	27.404	4	1	Median	988060000	472830000	515230000	92657000	41040000	51617000	145230000	81430000	63800000	376440000	171100000	205340000	373740000	179260000	194480000	56013	2010	52736	340328;340329;340330;340331;340332;340333;340334;340335;340336;340337;340338;340339;340340;340341;340342;340343;340344;340345;340346	459071;459072;459073;459074;459075;459076;459077;459078;459079;459080;459081;459082;459083;459084;459085;459086;459087;459088;459089;459090;459091;459092;459093;459094;459095;459096;459097;459098;459099;459100;459101;459102;459103;459104;459105;459106;459107;459108;459109;459110;459111;459112;459113;459114;459115;459116;459117;459118	459109			48	
VNVDIINFGEEEVNTEK	1	Unmodified	1947.9426	0.94255129	1842	P55036;A2A3N6	PSMD4;PIPSL	26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.1	0.3	9	1								3	3	2	2	84.107	83.59	2;3	2.8167E-11	74285	160511_QHF_FH_JSI9i_1	145.29	125.45			0.95641	0.85884	24.235	10	2	Median	1.0659	0.86237	14.13	3	2	Median	0.73347	0.85532	44.7	3	0	Median	0.91691	0.87119	8.5262	2	0	Median	0.9155	0.94965	18.248	2	0	Median	821900000	435830000	386070000	151060000	82005000	69058000	357760000	193610000	164140000	138220000	68952000	69264000	174860000	91260000	83603000	56014	1842	52737	340347;340348;340349;340350;340351;340352;340353;340354;340355;340356	459119;459120;459121;459122;459123;459124;459125;459126;459127;459128;459129;459130;459131;459132;459133;459134	459133			16	
VNVEAPDVNLEGLGGK	1	Unmodified	1609.8312	0.83115034	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	1	2	3	71.541	71.034	2;3	4.8171E-40	64288	160511_QHF_FH_JSI10i_1	202.44	174.26			1.1128	1.0609	21.019	6	1	Median	1.2665	1.0109	NaN	1	0	Median	0.90378	1.0442	NaN	1	0	Median	1.3337	1.3036	14.211	2	0	Median	0.87295	0.90388	24.914	2	1	Median	1309500000	584090000	725390000	247320000	84058000	163260000	329080000	148700000	180380000	399990000	182190000	217790000	333100000	169140000	163960000	56015	2286	52738	340357;340358;340359;340360;340361;340362;340363;340364	459135;459136;459137;459138;459139;459140;459141;459142;459143;459144;459145;459146;459147	459142			13	
VNVEHMTEK	1	Unmodified	1085.5175	0.51754412	1129	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.2	5.78		4	3					3			2	4	4	18.917	15.632	2;3	0.00077887	12957	160511_QHF_FH_JSI11i_2	79.148	63.267			2.5699	2.6336	47.046	9	9	Median	NaN	NaN	NaN	0	0	Median	4.9917	6.0041	24.779	2	2	Median	2.4579	2.4061	11.078	3	3	Median	2.9195	2.9679	44.389	4	4	Median	1916600000	448500000	1468100000	0	0	0	492330000	93514000	398810000	641660000	185430000	456230000	782620000	169550000	613080000	56016	1129	52739	340365;340366;340367;340368;340369;340370;340371;340372;340373;340374	459148;459149;459150;459151;459152;459153;459154;459155;459156;459157	459151			10	
VNVGAGSHPNK	1	Unmodified	1078.552	0.55195579	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.41	6.56		5	8					4	10	6	8	6	7	9.1589	4.8345	2;3	4.1644E-13	5437	160511_QHF_FH_JSI10i_3	148.32	117.03			0.99999	1.0032	22.021	27	7	Median	1.4122	1.1661	18.557	6	1	Median	0.79109	0.94294	22.144	8	2	Median	1.0503	0.99816	25.039	6	2	Median	0.99894	1.0032	19.918	7	2	Median	19227000000	9163800000	10064000000	1275800000	520600000	755150000	4688300000	2608600000	2079700000	5735200000	2486400000	3248800000	7528100000	3548300000	3979800000	56017	1192	52740	340375;340376;340377;340378;340379;340380;340381;340382;340383;340384;340385;340386;340387;340388;340389;340390;340391;340392;340393;340394;340395;340396;340397;340398;340399;340400;340401	459158;459159;459160;459161;459162;459163;459164;459165;459166;459167;459168;459169;459170;459171;459172;459173;459174;459175;459176;459177;459178;459179;459180;459181;459182;459183;459184	459162			27	
VNVHVLGVLLGQK	1	Unmodified	1374.8347	0.83471958	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			10						4	4	4	3	3	80.312	75.371	2;3	5.5669E-13	39458	160513_QHF_FH_JSI11Kac_6	126.1	95.229			0.86523	0.89208	20.387	7	3	Median	1.4605	1.2285	NaN	1	0	Median	0.70523	0.85153	6.5785	2	1	Median	1.069	1.0215	32.699	2	1	Median	0.90097	0.9398	20.268	2	1	Median	889410000	427700000	461710000	211190000	86331000	124850000	368490000	190280000	178210000	213960000	94079000	119880000	95777000	57007000	38771000	56018	3117	52741	340402;340403;340404;340405;340406;340407;340408;340409;340410;340411;340412;340413;340414;340415	459185;459186;459187;459188;459189;459190;459191;459192;459193;459194;459195;459196;459197;459198;459199;459200;459201;459202;459203	459191			19	
VNVKPSVVK	2	Unmodified	968.60187	0.6018661	484	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	19.823	19.224	3	0.0041755	15468	160511_QHF_FH_JSI9i_3	44.203	12.974			1.0334	0.93813	51.199	4	1	Median	1.0878	0.87324	NaN	1	0	Median	2.1325	2.3923	NaN	1	1	Median	0.83275	0.77282	NaN	1	0	Median	0.98171	1.0079	NaN	1	0	Median	743180000	380370000	362810000	229280000	118360000	110920000	132540000	64133000	68410000	111820000	59799000	52020000	269540000	138070000	131470000	56019	484	52742	340416;340417;340418;340419	459204;459205;459206;459207;459208	459207			5	
VNVNLLIFLLNK	1	Unmodified	1398.8599	0.8598717	1600;3340	P46940;Q86VI3	IQGAP1;IQGAP3	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	4.64			3						17	3	5	9	3	98.985	92.837	2;3	1.0716E-47	50517	160513_QHF_FH_JSI11Kac_6	223.32	175.5			0.81943	0.84781	19.534	11	11	Median	0.82852	0.7348	3.5807	2	2	Median	0.71489	0.82396	9.6334	4	4	Median	1.1174	1.0763	10.343	3	3	Plateau	0.81478	0.85474	2.8781	2	2	Median	14383000000	6989800000	7393500000	3539900000	1748100000	1791900000	3596000000	1900400000	1695600000	4455600000	1826200000	2629400000	2791700000	1515100000	1276500000	56020	1600;3340	52743	340420;340421;340422;340423;340424;340425;340426;340427;340428;340429;340430;340431;340432;340433;340434;340435;340436;340437;340438;340439	459209;459210;459211;459212;459213;459214;459215;459216;459217;459218;459219;459220;459221;459222;459223;459224;459225;459226;459227;459228	459212			20	
VNVNLLIFLLNKK	2	Unmodified	1526.9548	0.95483471	1600;3340	P46940;Q86VI3	IQGAP1;IQGAP3	Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP3	no	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	11.7	6.13			1						2	1	1		1	96.057	90.941	2;3	1.7825E-39	45967	160513_QHF_FH_JSI12Kac_6	173.32	141.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56021	1600;3340	52744	340440;340441;340442	459229;459230;459231	459230			3	
VNVPGSQAQLK	1	Unmodified	1139.6299	0.62987176	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	33.932	32.136	2	0.00032226	29203	160511_QHF_FH_JSI12i_1	72.607	56.067			0.76078	0.78937	21.694	9	2	Median	0.84833	0.7146	13.949	2	1	Median	0.74964	0.89044	6.5141	2	0	Median	0.92063	0.89588	33.576	3	1	Median	0.67446	0.74143	8.862	2	0	Median	1125300000	617790000	507470000	294850000	161480000	133370000	263470000	151390000	112070000	340050000	186530000	153520000	226900000	118390000	108500000	56022	2195	52745	340443;340444;340445;340446;340447;340448;340449;340450;340451	459232;459233;459234;459235;459236;459237;459238;459239	459233			7	
VNVPVIGGHAGK	1	Unmodified	1146.6509	0.65094155	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		8	8						6	4	7	4	7	40.399	38.148	2;3	1.56E-05	33250	160511_QHF_FH_JSI11i_3	113.62	86.507			1.0033	0.97212	56.63	18	4	Median	1.4509	1.1934	14.823	4	0	Median	0.77198	0.94493	91.927	5	1	Median	1.1673	1.144	20.446	4	1	Linear	1.0025	1.0083	54.111	5	2	Median	15810000000	7695900000	8114500000	2293700000	914870000	1378800000	4091900000	2112300000	1979600000	3803400000	1851100000	1952300000	5621500000	2817600000	2803900000	56023	1504	52746	340452;340453;340454;340455;340456;340457;340458;340459;340460;340461;340462;340463;340464;340465;340466;340467;340468;340469;340470;340471;340472;340473	459240;459241;459242;459243;459244;459245;459246;459247;459248;459249;459250;459251;459252;459253;459254;459255;459256;459257;459258;459259;459260;459261;459262;459263;459264;459265;459266;459267;459268;459269;459270;459271;459272;459273;459274;459275;459276;459277;459278;459279;459280;459281;459282;459283;459284;459285;459286;459287;459288;459289;459290;459291;459292;459293;459294	459248			55	
VNVQPELVS	0	Unmodified	983.52876	0.52876073	1803	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	52.631	51.876	2	0.025517	47125	160511_QHF_FH_JSI12i_1	49.097	38.224			1.2065	1.2175	20.335	3	1	Plateau	1.4984	1.2401	NaN	1	0	Median	0.97141	1.1347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80147	0.84117	NaN	1	1	Median	412110000	198210000	213900000	152600000	63500000	89101000	136230000	69957000	66272000	0	0	0	123280000	64751000	58527000	56024	1803	52747	340474;340475;340476	459295;459296;459297	459295			3	
VNVTGIYR	0	Unmodified	920.50797	0.50796571	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	36.909	36.369	2	0.019366	31819	160511_QHF_FH_JSI11i_3	46.813	23.884			0.90154	0.92157	24.245	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.1718	NaN	1	0	Median	0.74785	0.72158	NaN	1	0	Median	0.90154	0.92157	NaN	1	0	Median	487910000	247290000	240620000	0	0	0	59840000	27588000	32252000	171410000	98973000	72432000	256660000	120730000	135940000	56025	1409	52748	340477;340478;340479	459298;459299	459298			2	
VNVTVDYIRPASPATETVPAFSER	0	Unmodified	2618.334	0.33403068	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	3.78	4.37	1	4	3						1	2	3	2	2	76.964	75.537	3	4.4454E-34	63679	160511_QHF_FH_JSI10i_3	171.29	153.86			1.0241	1.1086	30.291	9	1	Median	1.4543	1.2127	12.695	2	0	Median	1.0034	1.2077	5.9148	3	1	Plateau	0.73944	0.7352	48.602	2	0	Median	0.79498	0.8528	5.408	2	0	Median	1651200000	802980000	848230000	488000000	210940000	277060000	830610000	414780000	415830000	182060000	104010000	78048000	150540000	73241000	77299000	56026	3213	52749	340480;340481;340482;340483;340484;340485;340486;340487;340488	459300;459301;459302;459303;459304;459305;459306	459301			6	
VNVVQYPELSDHEFIEEK	1	Unmodified	2174.0532	0.053164368	4653	Q9H1A4	ANAPC1	Anaphase-promoting complex subunit 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.191	70.905	3	0.0042712	61084	160511_QHF_FH_JSI12i_2	47.082	37.169			0.7767	0.85725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7767	0.85725	NaN	1	1	Median	33709000	17155000	16553000	0	0	0	0	0	0	0	0	0	33709000	17155000	16553000	56027	4653	52750	340489	459307	459307			1	
VNVVSILGITGSVLAK	1	Unmodified	1568.9501	0.95014327	3274	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	3	1	2	2	100.3	97.538	2;3	6.739E-12	82699	160511_QHF_FH_JSI9i_3	110.35	89.394			1.0467	0.9685	18.245	7	7	Median	1.0892	0.89522	13.907	2	2	Median	1.063	1.2513	NaN	1	1	Median	1.0653	1.0087	5.7517	2	2	Median	0.75898	0.76997	4.0273	2	2	Median	380140000	216470000	163680000	55566000	30280000	25286000	44597000	21795000	22803000	119040000	66478000	52558000	160950000	97913000	63032000	56028	3274	52751	340490;340491;340492;340493;340494;340495;340496;340497	459308;459309;459310;459311;459312;459313;459314;459315	459313			8	
VNWAEDPALK	1	Unmodified	1141.5768	0.57677356	4702	Q9H3R5	CENPH	Centromere protein H	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	18.884	17.796	2	0.025942	14631	160511_QHF_FH_JSI12i_2	42.109	15.725			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56029	4702	52752	340498	459316	459316			1	
VNWATTPSSQK	1	Unmodified	1217.6041	0.60405094	2163;1375	P31483;Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.86	4.16		5	1				1			1	1	4	1	29.345	27.425	2	5.8329E-06	22979	160511_QHF_FH_JSI11i_2	123.88	110.51			0.74278	0.7473	110.4	7	6	Median	0.16842	0.14222	NaN	1	1	Median	0.38794	0.47268	NaN	1	1	Median	0.90336	0.88871	103.79	4	4	Median	0.86647	0.93239	NaN	1	0	Median	559570000	395030000	164540000	239690000	211220000	28473000	85206000	63381000	21825000	192010000	105830000	86178000	42659000	14594000	28064000	56030	1375;2163	52753	340499;340500;340501;340502;340503;340504;340505	459317;459318;459319;459320;459321;459322;459323	459321			7	
VNWATTPSSQKK	2	Unmodified	1345.699	0.69901396	2163;1375	P31483;Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							3	1	2		20.482	19.668	2;3	0.00023432	16412	160511_QHF_FH_JSI11i_3	66.393	61.098			0.86477	0.85295	22.309	6	2	Median	0.90674	0.73065	29.354	3	2	Median	0.82474	0.92502	NaN	1	0	Median	0.96788	0.9186	21.959	2	0	Median	NaN	NaN	NaN	0	0	Median	498400000	240020000	258380000	167170000	78008000	89157000	138970000	76607000	62360000	192270000	85409000	106860000	0	0	0	56031	1375;2163	52754	340506;340507;340508;340509;340510;340511	459324;459325;459326;459327;459328;459329;459330;459331;459332	459324			9	
VNWTPEINK	1	Unmodified	1099.5662	0.56620887	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	48.081	47.126	2	0.032494	40400	160511_QHF_FH_JSI12i_2	61.679	37.524			1.1796	1.2115	16.734	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3914	1.3637	NaN	1	0	Median	1	1.0763	NaN	1	0	Median	121440000	66643000	54799000	0	0	0	0	0	0	64708000	30727000	33981000	56734000	35916000	20818000	56032	28	52755	340512;340513	459333	459333			0	
VNYDTTESK	1	Unmodified	1055.4771	0.47711909	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.43	4				1	1				1	3	1	1	12.502	9.7874	2	7.0493E-05	8452	160511_QHF_FH_JSI10i_1	96.331	86.743			0.89148	0.85799	14.654	6	0	Median	1.0715	0.8713	NaN	1	0	Median	0.90978	1.0859	18.728	3	0	Median	0.87355	0.84488	NaN	1	0	Median	0.75454	0.80308	NaN	1	0	Median	2640200000	1403400000	1236800000	627650000	337960000	289690000	723150000	427210000	295940000	639720000	340090000	299630000	649670000	298150000	351520000	56033	910	52756	340514;340515;340516;340517;340518;340519	459334;459335;459336;459337;459338;459339;459340;459341	459338			8	
VNYGAYINDFK	1	Unmodified	1302.6245	0.62445203	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.825	64.895	2	0.021006	55758	160511_QHF_FH_JSI12i_2	41.689	24.664			0.72888	0.7949	14.203	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69636	0.71894	NaN	1	0	Median	0.76292	0.87888	NaN	1	0	Median	130800000	80615000	50180000	0	0	0	0	0	0	76456000	48792000	27664000	54339000	31823000	22516000	56034	1094	52757	340520;340521	459342	459342			1	
VNYHYMSQVK	1	Unmodified	1267.6019	0.60194245	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.746	24.72	2	0.00025418	20530	160511_QHF_FH_JSI12i_3	80.231	67.604			1.1088	1.1542	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1088	1.1542	NaN	1	0	Median	37625000	14402000	23223000	0	0	0	0	0	0	0	0	0	37625000	14402000	23223000	56035	4936	52758	340522	459343;459344	459344			2	
VNYQANIWALK	1	Unmodified	1318.7034	0.70337105	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.78		4						1	5	2	4	2	2	72.418	66.803	2	3.7232E-11	35253	160513_QHF_FH_JSI9Kac_6	138.98	107.22			1.0025	1.0876	10.233	10	2	Median	1.3307	1.1609	6.263	2	0	Median	0.90968	1.0876	13.714	4	2	Median	1.1312	1.1231	12.524	2	0	Median	0.97047	1.0495	0.32956	2	0	Median	1049300000	509820000	539500000	210570000	87615000	122960000	343870000	179980000	163890000	261520000	130670000	130840000	233360000	111550000	121810000	56036	2354	52759	340523;340524;340525;340526;340527;340528;340529;340530;340531;340532	459345;459346;459347;459348;459349;459350;459351;459352;459353;459354	459349			10	
VNYVVQEAIVVIK	1	Unmodified	1472.8603	0.86026563	2296	Q10567	AP1B1	AP-1 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.133	83.404	2	0.0011169	73386	160511_QHF_FH_JSI9i_2	76.332	72.477			0.89124	0.88254	7.5739	4	4	Median	0.98807	0.85528	NaN	1	1	Median	0.65147	0.78281	NaN	1	1	Median	0.92959	0.91068	NaN	1	1	Median	0.85447	0.92487	NaN	1	1	Median	128280000	71406000	56878000	28517000	13422000	15095000	25453000	16288000	9164800	41721000	22501000	19220000	32594000	19195000	13398000	56037	2296	52760	340533;340534;340535;340536	459355;459356;459357;459358	459356			4	
VNYVVQEAIVVIR	0	Unmodified	1500.8664	0.86641364	2046	P63010	AP2B1	AP-2 complex subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			84.036	83.412	2	0.0008189	73482	160511_QHF_FH_JSI9i_2	93.058	59.097			0.73343	0.75198	2.0624	2	2	Median	0.87402	0.76302	NaN	1	1	Median	0.61546	0.74109	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56178000	29555000	26623000	30327000	14881000	15446000	25852000	14674000	11177000	0	0	0	0	0	0	56038	2046	52761	340537;340538	459359;459360	459359			2	
VPAATSAIITNDGIGINPAQTAGNVFLK	1	Unmodified	2752.4759	0.47594389	1969	P61960	UFM1	Ubiquitin-fold modifier 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.36	0.479	9	5								3	4	3	4	100.85	100.74	3;4	1.7251E-27	91407	160511_QHF_FH_JSI10i_1	146.65	143.85			1.1316	1.1569	8.3657	13	8	Median	1.4675	1.2212	8.8425	3	2	Plateau	0.96904	1.17	7.3956	4	3	Median	1.1627	1.1228	14.702	3	1	Median	1.1769	1.227	6.5033	3	2	Plateau	1932000000	829060000	1103000000	272660000	116030000	156620000	734520000	333920000	400600000	459700000	200100000	259600000	465170000	179010000	286160000	56039	1969	52762	340539;340540;340541;340542;340543;340544;340545;340546;340547;340548;340549;340550;340551;340552	459361;459362;459363;459364;459365;459366;459367;459368;459369;459370;459371;459372;459373;459374;459375;459376;459377;459378	459371			18	
VPADLGAEAGLQQLLGALR	0	Unmodified	1891.0527	0.052710858	1433	P35270	SPR	Sepiapterin reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	2	3	2	102	101.9	2;3	3.2093E-25	87777	160511_QHF_FH_JSI12i_2	179.14	150.51			0.916	0.9777	9.9911	8	3	Median	1.1913	1.0377	NaN	1	0	Median	0.73511	0.89488	10.692	2	1	Median	0.87247	0.89195	9.7559	3	1	Plateau	0.94049	1.0542	8.8296	2	1	Median	1354000000	714000000	639970000	275580000	129070000	146510000	286780000	154240000	132540000	410100000	232550000	177550000	381510000	198140000	183370000	56040	1433	52763	340553;340554;340555;340556;340557;340558;340559;340560	459379;459380;459381;459382;459383;459384;459385	459380			6	
VPADLLK	1	Unmodified	754.45889	0.45889025	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	33.423	32.698	2	0.048713	29208	160511_QHF_FH_JSI10i_1	43.124	6.9381			0.98755	1.1237	28.775	3	0	Median	0.98755	0.80875	NaN	1	0	Median	0.94839	1.1237	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3677	1.435	NaN	1	0	Median	499560000	254360000	245200000	123750000	56099000	67653000	229610000	122540000	107070000	0	0	0	146200000	75720000	70477000	56041	2094	52764	340561;340562;340563	459386;459387;459388	459388			3	
VPADTEVVCAPPTAYIDFAR	0	Unmodified	2191.062	0.061954915	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								2	3	2	2	86.862	86.4	2;3	2.4714E-25	78620	160511_QHF_FH_JSI11i_1	224.16	194.47			0.97181	1.0712	23.834	9	1	Median	1.2093	0.99057	11.061	2	0	Median	0.9401	1.1083	35.158	3	1	Median	0.92858	0.89961	3.4746	2	0	Median	1.2728	1.3207	1.6574	2	0	Median	2473100000	1191200000	1281900000	274370000	114200000	160170000	778250000	406860000	371380000	776610000	405560000	371060000	643890000	264600000	379290000	56042	1908	52765	340564;340565;340566;340567;340568;340569;340570;340571;340572	459389;459390;459391;459392;459393;459394;459395;459396;459397;459398;459399;459400;459401;459402;459403;459404;459405;459406;459407;459408;459409	459390			21	
VPAFLDLFMQSLFK	1	Unmodified	1654.8793	0.87928651	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	11.7	6.13			1						2		1	1	1	102.37	97.326	2	0.00018176	52990	160513_QHF_FH_JSI11Kac_6	132.76	91.481			1.0224	1.1411	3.226	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0076	1.1675	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0374	1.1154	NaN	1	0	Median	134330000	58267000	76059000	0	0	0	115960000	53472000	62490000	6591600	0	6591600	11773000	4795200	6977800	56043	3440	52766	340573;340574;340575	459410;459411;459412;459413	459410			4	
VPAFLDLFMQSLFKPGAR	1	Unmodified	2036.0917	0.091738901	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		98.728	90.638	3	6.031E-06	54268	160513_QHF_FH_JSI10Kac_6	99.044	88.879			1.0345	1.2162	100.23	3	2	Median	0.28367	0.24821	NaN	1	1	Median	1.0345	1.2162	NaN	1	0	Median	1.6813	1.5828	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1554900000	919550000	635320000	326550000	266920000	59623000	884290000	495680000	388610000	344040000	156950000	187090000	0	0	0	56044	3440	52767	340576;340577;340578	459414;459415;459416;459417	459417			4	
VPAGNWVLIEGVDQPIVK	1	Unmodified	1933.0673	0.067298289	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.355	93.96	3	0.02519	82635	160511_QHF_FH_JSI11i_2	41.86	36.317			0.68523	0.70137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68523	0.70137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23195000	15345000	7850000	0	0	0	0	0	0	23195000	15345000	7850000	0	0	0	56045	2609	52768	340579	459418	459418			0	
VPAINVNDSVTK	1	Unmodified	1255.6772	0.67721588	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	41.794	41.035	2	0.0013493	37158	160511_QHF_FH_JSI11i_1	63.408	44.628			0.83736	0.86284	15.961	5	1	Median	1.0583	0.85399	31.853	2	1	Median	0.75544	0.87576	NaN	1	0	Median	0.88903	0.86284	NaN	1	0	Median	0.80921	0.85818	NaN	1	0	Median	4794800000	2475700000	2319100000	1518100000	735170000	782920000	1339500000	725560000	613910000	1205900000	634150000	571720000	731360000	380850000	350520000	56046	1234	52769	340580;340581;340582;340583;340584	459419;459420;459421;459422;459423;459424;459425;459426;459427;459428	459420			10	
VPAIYGVDTR	0	Unmodified	1089.5819	0.58185893	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	42.97	42.32	2	0.049572	38354	160511_QHF_FH_JSI12i_1	44.753	24.233			0.93149	0.99197	14.552	5	0	Median	0.88652	0.71434	NaN	1	0	Median	0.83668	1.0111	NaN	1	0	Median	0.97854	0.93996	NaN	1	0	Median	0.93149	0.99197	0	2	0	Median	2577800000	1343000000	1234800000	41814000	23411000	18403000	634700000	332880000	301820000	596240000	304020000	292220000	1305100000	682670000	622410000	56047	1372	52770	340585;340586;340587;340588;340589	459429;459430	459430			2	
VPAPVTMDSFFFGCELSGHTR	0	Unmodified	2354.0824	0.082372781	547	O75607	NPM3	Nucleoplasmin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		97.112	96.906	3	1.44E-06	85738	160511_QHF_FH_JSI10i_2	74.062	58.808			0.84039	0.90291	24.023	2	1	Median	NaN	NaN	NaN	0	0	Median	0.88852	1.0701	NaN	1	0	Median	0.79486	0.76186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43041000	22607000	20433000	0	0	0	25898000	13173000	12725000	17142000	9434400	7708000	0	0	0	56048	547	52771	340590;340591	459431;459432	459432			2	
VPAQANGTPTTK	1	Unmodified	1183.6197	0.619701	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	9.931	9.5207	2	0.0073158	7202	160511_QHF_FH_JSI11i_1	51.268	35.065			1.1553	1.084	4.9112	3	0	Median	1.2722	1.0309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1553	1.084	NaN	1	0	Median	1.1116	1.1373	NaN	1	0	Median	164150000	60882000	103270000	42660000	13804000	28857000	0	0	0	63775000	25440000	38335000	57717000	21638000	36079000	56049	4361	52772	340592;340593;340594	459433;459434	459433			2	
VPASIDVNK	1	Unmodified	941.5182	0.51819605	5784				yes	yes	0	0	0	0			By MS/MS		1	0	1											1		53.975	53.564	2	0.037029	48548	160511_QHF_FH_JSI11i_1	46.813	21.869	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86919000	86919000	0	0	0	0	0	0	0	86919000	86919000	0	0	0	0	56050	5784	52773	340595	459435	459435			1	
VPATLQVLQTLPEENYQVLR	0	Unmodified	2310.2583	0.25834654	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	1	3	2	100.26	100.14	3	3.2818E-05	89181	160511_QHF_FH_JSI11i_3	59.512	54.419			0.78012	0.92859	28.89	7	0	Median	1.1923	1.0334	NaN	1	0	Median	0.75947	0.92859	NaN	1	0	Median	1.0335	0.99336	25.358	3	0	Median	0.59446	0.6329	39.399	2	0	Median	341620000	172820000	168790000	48915000	20179000	28736000	48957000	28006000	20951000	159930000	80022000	79907000	83815000	44615000	39200000	56051	2261	52774	340596;340597;340598;340599;340600;340601;340602	459436;459437;459438;459439	459437			3	
VPCNTVFGSQHQMDVAFLEK	1	Unmodified	2306.0824	0.082372781	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.098	74.956	3	0.0048577	66934	160511_QHF_FH_JSI11i_3	41.136	26.522			0.78826	0.7735	23.867	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68213	0.65338	NaN	1	1	Median	0.91089	0.9157	NaN	1	1	Median	56735000	29363000	27372000	0	0	0	0	0	0	30339000	17941000	12398000	26396000	11422000	14974000	56052	3111	52775	340603;340604	459440;459441	459440			2	
VPDGKPENEFAFNAEFK	2	Unmodified	1937.9159	0.9159426	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	3	3	3	62.107	61.369	3	5.22E-05	53144	160511_QHF_FH_JSI11i_2	78.078	69.032			1.0119	1.0577	16.045	10	0	Median	0.99755	0.86667	2.3213	2	0	Median	0.86218	1.0536	15.933	3	0	Median	1.096	1.1055	5.6851	2	0	Median	0.99449	1.1047	18.906	3	0	Median	1188000000	614700000	573270000	221910000	120760000	101150000	234380000	114610000	119770000	334060000	185190000	148870000	397630000	194150000	203480000	56053	2641	52776	340605;340606;340607;340608;340609;340610;340611;340612;340613;340614;340615	459442;459443;459444;459445;459446;459447;459448;459449;459450;459451;459452;459453	459447			12	
VPDGMVGFIIGR	0	Unmodified	1259.6696	0.66962808	3966	Q96AE4	FUBP1	Far upstream element-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	84.599	83.936	2	0.010879	73095	160511_QHF_FH_JSI12i_3	47.187	35.339			1.0025	0.97491	7.2801	4	0	Linear	1.3794	1.1227	NaN	1	0	Median	0.94073	1.0722	NaN	1	0	Median	1.0683	1.0265	NaN	1	0	Median	0.91638	0.94617	NaN	1	0	Median	1204300000	606640000	597650000	81337000	34142000	47195000	172130000	87385000	84741000	444930000	220780000	224150000	505890000	264330000	241560000	56054	3966	52777	340616;340617;340618;340619	459454;459455	459455			2	
VPDSTYEMIGGLDK	1	Unmodified	1523.7178	0.71776007	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	64.494	63.788	2	0.0033694	58081	160511_QHF_FH_JSI12i_1	69.451	56.097			1.257	1.0952	9.2839	5	0	Median	1.257	1.0344	0.58462	2	0	Median	1.0157	1.1626	NaN	1	0	Median	1.3308	1.2897	NaN	1	0	Median	1.0852	1.0952	NaN	1	0	Median	643980000	312920000	331060000	234450000	115890000	118560000	117430000	63160000	54272000	162310000	71464000	90844000	129800000	62413000	67384000	56055	1984	52778	340620;340621;340622;340623;340624	459456;459457;459458;459459;459460	459458			5	
VPDVDIK	1	Unmodified	784.43307	0.43306943	2286;1625	Q09666;P48552	AHNAK;NRIP1	Neuroblast differentiation-associated protein AHNAK;Nuclear receptor-interacting protein 1	no	no	0	0	0	0	By MS/MS				1	0	1									1				29.672	28.398	2	0.048713	24528	160511_QHF_FH_JSI9i_1	43.124	6.9381			1.4354	1.1725	NaN	1	0	Median	1.4354	1.1725	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137280000	61569000	75716000	137280000	61569000	75716000	0	0	0	0	0	0	0	0	0	56056	2286;1625	52779	340625	459461	459461			1	
VPEANILGQIGHGYK	1	Unmodified	1594.8467	0.84674083	1571	P45954	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		60.304	60.304	3	0.003004	53459	160511_QHF_FH_JSI11i_3	53.946	47.062			0.22917	0.22244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22917	0.22244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	593160000	517080000	76083000	0	0	0	0	0	0	593160000	517080000	76083000	0	0	0	56057	1571	52780	340626	459462	459462			1	
VPEGVAGAPNEAALLALMER	0	Unmodified	2007.0459	0.04591092	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			99.425	99.419	3	0.0052274	90062	160511_QHF_FH_JSI10i_1	40.369	22.881			0.48769	0.53086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48769	0.53086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11379000	8446900	2931800	0	0	0	11379000	8446900	2931800	0	0	0	0	0	0	56058	4	52781	340627	459463	459463			1	
VPEIEVTVEGPNNNNPQTSAVR	0	Unmodified	2363.1717	0.17171637	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	60.2	59.546	2	4.987E-05	54156	160511_QHF_FH_JSI12i_1	86.291	73.908			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56059	2087	52782	340628	459464	459464			1	
VPEPNENVGDAVQTK	1	Unmodified	1595.7791	0.77911477	3260	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	35.395	35	2	0.024304	31607	160511_QHF_FH_JSI12i_1	45.077	30.105			0.84721	0.98738	7.6393	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74565	0.88409	NaN	1	0	Median	1.0376	1.005	NaN	1	0	Median	0.84721	0.87713	NaN	1	0	Median	192550000	99788000	92764000	0	0	0	62977000	36300000	26677000	76871000	35450000	41422000	52704000	28039000	24666000	56060	3260	52783	340629;340630;340631	459465;459466	459465			2	
VPEVPTAPATDAAPK	1	Unmodified	1462.7668	0.76675917	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	43.577	42.941	2	0.0039756	38846	160511_QHF_FH_JSI12i_1	63.473	50.045			0.75678	0.78705	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75678	0.78705	NaN	1	1	Median	125750000	71378000	54374000	0	0	0	0	0	0	0	0	0	125750000	71378000	54374000	56061	5298	52784	340632;340633	459467;459468;459469	459468			3	
VPEWVDTVK	1	Unmodified	1071.5601	0.56006086	1483	P39019	RPS19	40S ribosomal protein S19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.91	4	6	2				3			3	4	3	5	51.786	48.54	2	0.0013128	43788	160511_QHF_FH_JSI10i_1	69.598	60.384			0.90175	0.91932	8.1989	13	1	Median	1.1447	0.91932	8.0562	3	0	Median	0.78474	0.93225	3.855	4	0	Linear	0.93842	0.93484	12.416	3	0	Plateau	0.85286	0.90337	10.516	3	1	Median	6672800000	3449300000	3223400000	1312000000	625300000	686740000	1789500000	934190000	855360000	2049100000	1103500000	945620000	1522100000	786370000	735720000	56062	1483	52785	340634;340635;340636;340637;340638;340639;340640;340641;340642;340643;340644;340645;340646;340647;340648	459470;459471;459472;459473;459474;459475;459476;459477;459478;459479;459480;459481;459482;459483;459484;459485;459486;459487;459488;459489;459490;459491;459492;459493;459494;459495;459496;459497;459498;459499;459500;459501;459502;459503;459504;459505;459506;459507;459508;459509	459488			40	
VPFALFESFPEDFYVEGLPEGVPFR	0	Unmodified	2887.4109	0.41088401	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.04	102.93	3	2.8253E-09	90733	160511_QHF_FH_JSI11i_2	78.324	69.356			0.72376	0.74288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72376	0.74288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57918000	32642000	25277000	0	0	0	0	0	0	57918000	32642000	25277000	0	0	0	56063	2087	52786	340649	459510	459510			1	
VPFCPMVGSEVYSTEIK	1	Unmodified	1941.9216	0.92162161	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	2	2	1	79.833	79.305	2;3	5.0278E-08	72279	160511_QHF_FH_JSI11i_1	127.18	110.1			0.95301	0.9373	25.508	6	2	Median	0.96238	0.80945	NaN	1	1	Median	0.76355	0.88605	33.398	2	1	Median	0.96079	0.9373	9.7603	2	0	Median	1.304	1.4344	NaN	1	0	Median	287220000	149570000	137650000	22531000	8888400	13643000	86296000	45622000	40674000	141400000	78171000	63233000	36990000	16893000	20098000	56064	5496	52787	340650;340651;340652;340653;340654;340655	459511;459512;459513;459514;459515;459516;459517;459518	459512			7	
VPFDAATLHTSTAMAAQHGMDDDGTGQK	1	Unmodified	2872.2756	0.27560587	848	P06396	GSN	Gelsolin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	56.929	56.516	4	1.3381E-10	50144	160511_QHF_FH_JSI11i_3	79.388	73.855		+	1.0935	1.1223	15.109	4	0	Median	NaN	NaN	NaN	0	0	Median	0.83213	1.0185	NaN	1	0	Median	1.3173	1.2512	1.6461	2	0	Median	0.92578	0.92735	NaN	1	0	Median	348040000	173150000	174890000	0	0	0	44329000	22406000	21923000	143510000	69860000	73646000	160210000	80888000	79322000	56065	848	52788	340656;340657;340658;340659	459519;459520;459521;459522;459523;459524;459525	459521			7	
VPFIHVGNQVVSELGPIVQFVK	1	Unmodified	2405.3471	0.34710196	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0	By MS/MS		By matching	By matching	3	0			3							1		1	1	101.8	101.75	3	5.6452E-09	82925	160511_QHF_FH_JSI9i_3	98.132	82.711			1.1053	1.0389	5.6193	3	0	Plateau	1.2502	0.99433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1691	1.1117	NaN	1	0	Median	1.0451	1.0389	NaN	1	0	Median	474530000	210110000	264410000	51806000	25213000	26593000	0	0	0	207660000	92249000	115410000	215060000	92651000	122410000	56066	524	52789	340660;340661;340662	459526;459527	459526			2	
VPFILTYDFIHVIQQGK	1	Unmodified	2017.1037	0.1036838	1534	P42338	PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.006	89.286	3	0.018607	51464	160513_QHF_FH_JSI10Kac_6	32.366	23.083			1.3471	1.6269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3471	1.6269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64651000	26073000	38578000	0	0	0	64651000	26073000	38578000	0	0	0	0	0	0	56067	1534	52790	340663	459528	459528			1	
VPFLDHR	0	Unmodified	882.47119	0.47118627	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	3	2	3	29.844	29.22	3	0.0044891	24533	160511_QHF_FH_JSI12i_3	55.676	16.884			1.0031	1.0785	25.086	9	0	Median	1.4661	1.1884	NaN	1	0	Median	1.2693	1.4744	22.616	3	0	Median	0.98197	0.95495	17.202	2	0	Median	0.92112	0.93655	8.0459	3	0	Median	407340000	198810000	208530000	36145000	15867000	20278000	85348000	40753000	44595000	126080000	55205000	70871000	159770000	86983000	72788000	56068	900	52791	340664;340665;340666;340667;340668;340669;340670;340671;340672	459529;459530;459531;459532	459532			4	
VPFLEVNDPGEPSGLETLK	1	Unmodified	2040.0415	0.041537049	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		88.38	87.791	2;3	0.0013803	79991	160511_QHF_FH_JSI11i_1	61.375	48.608			1.7556	1.5503	56.339	2	1	Median	1.2763	1.0409	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.4149	2.3091	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25510000	10606000	14904000	14665000	6732200	7933200	0	0	0	10844000	3873700	6970600	0	0	0	56069	953	52792	340673;340674	459533;459534	459533			2	
VPFSPGPAPPPHMGELDQER	0	Unmodified	2157.0313	0.031323489	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	58.856	58.165	3	2.1687E-07	51645	160511_QHF_FH_JSI11i_3	97.488	89.534			0.93533	0.98955	16.476	5	0	Median	1.6372	1.3986	NaN	1	0	Median	0.91495	1.1152	NaN	1	0	Median	1.026	0.98955	NaN	1	0	Median	0.90646	0.94878	1.2056	2	0	Median	544270000	260760000	283510000	87428000	32037000	55391000	85321000	38201000	47121000	171020000	88201000	82818000	200500000	102320000	98179000	56070	3172	52793	340675;340676;340677;340678;340679	459535;459536;459537;459538;459539;459540;459541	459536			6	
VPGFYQFFYSSDFEQK	1	Unmodified	1987.8992	0.89922991	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	91.16	81.718	3	0.0010104	45770	160513_QHF_FH_JSI11Kac_6	79.022	70.421			0.5405	0.58091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5405	0.58091	NaN	1	0	Median	26857000	18399000	8457700	0	0	0	0	0	0	0	0	0	26857000	18399000	8457700	56071	405	52794	340680;340681	459542;459543	459542			2	
VPGIDATTK	1	Unmodified	900.49165	0.49164694	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By matching	By MS/MS			1	0	2									1	1			22.683	21.942	2	0.051719	19060	160511_QHF_FH_JSI10i_1	35.445	21.032			1.1404	1.135	13.644	2	0	Median	1.5283	1.2499	NaN	1	0	Median	0.85092	1.0306	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	598900000	287860000	311040000	310890000	117040000	193850000	288010000	170820000	117190000	0	0	0	0	0	0	56072	2286	52795	340682;340683	459544	459544			1	
VPGLPMSDQYVK	1	Unmodified	1332.6748	0.67477304	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		58.757	58.334	2	0.055356	52997	160511_QHF_FH_JSI11i_1	35.224	24.701			0.80603	0.79665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80603	0.79665	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	197430000	99478000	97954000	0	0	0	0	0	0	197430000	99478000	97954000	0	0	0	56073	179	52796	340684	459545	459545			1	
VPGLPTPIENMILR	0	Unmodified	1548.8698	0.86978446	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	2	3	2	100.84	100.79	2;3	2.2983E-05	87424	160511_QHF_FH_JSI12i_3	92.295	85.256			1.1476	1.1383	19.881	8	1	Median	2.1254	1.8371	NaN	1	1	Median	1.0195	1.2436	22.511	2	0	Median	1.1478	1.0766	11.877	3	0	Median	1.1156	1.1383	5.8457	2	0	Median	1188200000	544810000	643360000	23829000	8441500	15388000	122740000	55291000	67447000	481060000	217630000	263430000	560550000	263450000	297100000	56074	3101	52797	340685;340686;340687;340688;340689;340690;340691;340692	459546;459547;459548;459549;459550;459551;459552;459553	459553			8	
VPGPSAADR	0	Unmodified	868.44028	0.44028008	5792				yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	45.959	36.687	2	0.017983	19584	160513_QHF_FH_JSI9Kac_6	62.659	34.236	+		0.014943	0.016882	78.376	4	4	Median	0.0061123	0.0051669	NaN	1	1	Median	0.012353	0.01467	NaN	1	1	Median	0.034765	0.033379	NaN	1	1	Median	0.018075	0.019427	NaN	1	1	Median	453080000	445690000	7390900	126110000	125350000	764470	121040000	118910000	2134900	114550000	110950000	3605100	91371000	90485000	886400	56075	5792	52798	340693;340694;340695;340696	459554;459555;459556;459557	459555			4	
VPGPVQQALQSAEMSLDEIEQVILVGGATR	0	Unmodified	3134.6282	0.62816379	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			103.87	98.146	3	9.2262E-49	58115	160513_QHF_FH_JSI10Kac_6	155.8	147.28			0.79401	0.92047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79401	0.92047	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	51211000	24841000	26370000	0	0	0	51211000	24841000	26370000	0	0	0	0	0	0	56076	5633	52799	340697	459558	459558			1	
VPGSQLTLGYMEEHGFTEPILVPK	1	Unmodified	2641.3462	0.34617527	483	O75151	PHF2	Lysine-specific demethylase PHF2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	97.7	97.72	3	0.048931	84633	160511_QHF_FH_JSI12i_3	18.403	14.941			1.2232	1.2599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2232	1.2599	NaN	1	1	Median	15064000	7103000	7961400	0	0	0	0	0	0	0	0	0	15064000	7103000	7961400	56077	483	52800	340698	459559	459559			1	
VPGYGLQVR	0	Unmodified	987.55016	0.55016488	5105	Q9NXE8	CWC25	Pre-mRNA-splicing factor CWC25 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			17.571	16.476	3	0.014041	13201	160511_QHF_FH_JSI9i_3	34.253	15.813			0.39919	0.39366	7.8796	2	2	Median	0.46102	0.37233	NaN	1	1	Median	0.34566	0.41622	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202670000	134210000	68457000	124050000	79393000	44660000	78614000	54816000	23798000	0	0	0	0	0	0	56078	5105	52801	340699;340700	459560;459561	459561			2	
VPHLIDHQISSGENTR	0	Unmodified	1801.9071	0.90710925	5459	Q9UPN6	SCAF8	Protein SCAF8	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				30.401	29.008	3	0.0020275	23572	160511_QHF_FH_JSI9i_3	50.653	46.552			1.8852	1.5298	NaN	1	1	Median	1.8852	1.5298	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26220000	9079700	17141000	26220000	9079700	17141000	0	0	0	0	0	0	0	0	0	56079	5459	52802	340701	459562	459562			1	
VPHLWGQSLYILSSLLAEGFLAAGEIDPLNRR	0	Unmodified	3534.8987	0.8987234	1577	P46019	PHKA2	Phosphorylase b kinase regulatory subunit alpha, liver isoform	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.17	97.447	4	5.3703E-06	57659	160513_QHF_FH_JSI10Kac_6	56.383	50.897			0.95823	1.1396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95823	1.1396	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89929000	48613000	41316000	0	0	0	89929000	48613000	41316000	0	0	0	0	0	0	56080	1577	52803	340702	459563	459563			0	
VPHNAAVQVYDYR	0	Unmodified	1530.7579	0.75792582	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	33.498	32.993	3	2.8015E-05	28722	160511_QHF_FH_JSI11i_3	88.075	76.492			0.89365	0.87545	16.169	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.98085	1.1478	NaN	1	0	Median	0.97806	0.94449	NaN	1	0	Median	0.81652	0.83269	NaN	1	0	Median	400890000	221440000	179450000	0	0	0	18369000	10466000	7903300	173230000	87258000	85969000	209290000	123720000	85578000	56081	2573	52804	340703;340704;340705	459564;459565;459566;459567	459565			4	
VPHSLDLSSPNMANTVNAALK	1	Oxidation (M)	2194.1052	0.10521671	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	56.031	55.907	3	3.9124E-08	48003	160511_QHF_FH_JSI12i_3	95.5	87.14			1.2714	1.2328	7.3995	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3927	1.2991	NaN	1	0	Median	1.1606	1.17	NaN	1	0	Median	134470000	65935000	68531000	0	0	0	0	0	0	50779000	26246000	24532000	83686000	39688000	43998000	56082	3290	52805	340706;340707	459568;459569;459570;459571	459571		2241	4	
VPHSLDLSSPNMANTVNAALK	1	Unmodified	2178.1103	0.11030209	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	2	2	71.452	70.781	3	5.7077E-18	61273	160511_QHF_FH_JSI12i_3	142.43	134.73			0.99513	0.99138	13.577	7	4	Median	0.96025	0.81399	11.952	2	2	Median	0.77467	0.94206	NaN	1	0	Median	1.0556	1.0243	4.623	2	1	Median	1.0096	1.0847	3.4775	2	1	Median	986320000	489190000	497130000	173610000	90383000	83229000	122410000	63260000	59152000	333080000	164010000	169070000	357220000	171530000	185680000	56083	3290	52805	340708;340709;340710;340711;340712;340713;340714	459572;459573;459574;459575;459576;459577;459578;459579;459580;459581;459582;459583	459582			12	
VPHSLDLSSPNMANTVNAALKPLETLSR	1	Unmodified	2974.5546	0.55460491	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	100.85	100.76	4	8.6306E-27	83328	160511_QHF_FH_JSI10i_3	139.4	133.3			0.86485	0.84537	7.3238	4	0	Median	1.1845	0.96122	NaN	1	0	Median	0.70349	0.82072	NaN	1	0	Median	0.92231	0.86601	NaN	1	0	Median	0.81097	0.82521	NaN	1	0	Median	722900000	378730000	344170000	183430000	78999000	104440000	314920000	187070000	127860000	161210000	80368000	80839000	63334000	32297000	31036000	56084	3290	52806	340715;340716;340717;340718	459584;459585;459586;459587;459588	459587			5	
VPHWYHFSCFWK	1	Unmodified	1692.766	0.76598809	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									34	6	7	11	10	78.145	69.521	2;3;4	3.0595E-20	37189	160513_QHF_FH_JSI10Kac_6	137.01	126.95			1.1007	1.0392	24.164	34	7	Median	1.2222	1.0383	14.13	6	2	Median	0.81414	0.93429	7.183	7	0	Median	1.0217	0.97436	25.587	11	3	Median	1.3367	1.4384	20.701	10	2	Median	4758100000	2311500000	2446600000	514070000	222470000	291610000	2254900000	1156700000	1098200000	1079400000	538150000	541270000	909690000	394230000	515460000	56085	939	52807	340719;340720;340721;340722;340723;340724;340725;340726;340727;340728;340729;340730;340731;340732;340733;340734;340735;340736;340737;340738;340739;340740;340741;340742;340743;340744;340745;340746;340747;340748;340749;340750;340751;340752	459589;459590;459591;459592;459593;459594;459595;459596;459597;459598;459599;459600;459601;459602;459603;459604;459605;459606;459607;459608;459609;459610;459611;459612;459613;459614;459615;459616;459617;459618;459619;459620;459621;459622;459623;459624;459625;459626;459627;459628;459629;459630;459631;459632;459633;459634;459635;459636;459637;459638;459639;459640;459641;459642;459643;459644;459645;459646;459647;459648;459649;459650;459651;459652	459639			63	
VPIIVPIMMLAIK	1	Unmodified	1436.8863	0.88628614	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.23			9						5	2	3	5	4	101.55	97.743	2;3	2.7707E-10	51748	160513_QHF_FH_JSI11Kac_6	124.1	109.42			0.88726	0.97483	16.814	9	9	Median	0.7824	0.66217	NaN	1	1	Median	0.75777	0.89988	13.804	2	2	Median	1.0586	0.99596	16.379	3	3	Median	0.96382	0.97483	11.502	3	3	Median	1989900000	1068300000	921530000	10394000	6305100	4089100	461980000	268990000	192990000	644200000	324330000	319870000	873300000	468720000	404580000	56086	107	52808	340753;340754;340755;340756;340757;340758;340759;340760;340761;340762;340763;340764;340765;340766	459653;459654;459655;459656;459657;459658;459659;459660;459661;459662;459663;459664;459665;459666	459659			14	
VPILVAQEGESSQQLNDSSVIISALK	1	Unmodified	2724.4545	0.45453974	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	2	3	2	100.87	100.76	3	1.3807E-41	91339	160511_QHF_FH_JSI12i_1	170.56	164.13			0.84585	0.85904	55.743	8	8	Median	4.3496	3.6116	NaN	1	1	Median	0.84927	0.99121	21.42	2	2	Median	0.8569	0.8444	36.214	3	3	Median	0.78167	0.8015	10.984	2	2	Median	903390000	442760000	460630000	56939000	11395000	45544000	311970000	150390000	161590000	276320000	141850000	134480000	258150000	139130000	119020000	56087	4773	52809	340767;340768;340769;340770;340771;340772;340773;340774	459667;459668;459669;459670;459671;459672;459673;459674	459669			8	
VPIPCYLIALVVGALESR	0	Unmodified	1969.1071	0.10705461	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		104.42	96.897	2;3	6.0058E-06	58278	160513_QHF_FH_JSI10Kac_6	70.235	62.455			1.013	1.156	11.064	4	1	Median	1.39	1.1926	NaN	1	1	Median	0.98231	1.1746	6.6597	2	0	Median	0.99749	0.95984	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1394400000	690170000	704220000	50076000	18476000	31600000	1064700000	530760000	533930000	279630000	140940000	138690000	0	0	0	56088	943	52810	340775;340776;340777;340778	459675;459676;459677;459678	459677			4	
VPIPWVSGTSASTPVFGGILSLINEHR	0	Unmodified	2833.5127	0.51266374	202	O14773	TPP1	Tripeptidyl-peptidase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.84	92.119	3	2.6031E-49	53724	160513_QHF_FH_JSI10Kac_6	173.35	154.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	192570000	110060000	82514000	0	0	0	192570000	110060000	82514000	0	0	0	0	0	0	56089	202	52811	340779	459679	459679			1	
VPITAVIAAK	1	Unmodified	981.62227	0.62226719	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	56.057	55.223	2	0.0010462	47293	160511_QHF_FH_JSI12i_3	68.224	59.009			1.166	1.1198	7.4051	4	0	Median	1.4401	1.1572	NaN	1	0	Median	0.94773	1.0836	NaN	1	0	Median	1.1348	1.0427	NaN	1	0	Median	1.1981	1.2336	NaN	1	0	Median	503600000	252090000	251510000	54434000	25550000	28884000	34963000	22295000	12668000	138680000	61835000	76849000	275520000	142410000	133110000	56090	1316	52812	340780;340781;340782;340783	459680;459681	459681			2	
VPITYLELLN	0	Unmodified	1173.6645	0.66452593	5559	Q9Y371	SH3GLB1	Endophilin-B1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	101.39	101.27	2	6.013E-05	91859	160511_QHF_FH_JSI12i_1	91.065	70.736			0.95927	0.9491	1.3165	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98912	0.94031	NaN	1	0	Median	0.93032	0.95798	NaN	1	0	Median	114320000	58351000	55971000	0	0	0	0	0	0	62458000	30790000	31669000	51864000	27562000	24302000	56091	5559	52813	340784;340785	459682;459683;459684	459683			3	
VPKTAENFR	1	Acetyl (K)	1102.5771	0.57710791	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.6	0.49							2	3			1	2	2	34.7	25.231	2	0.019079	15482	160513_QHF_FH_JSI12Kac_4	54.776	40.78			0.6408	0.70832	52.764	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0165	1.1983	NaN	1	0	Median	0.35833	0.35335	2.3692	2	0	Median	0.66359	0.72603	3.4925	2	0	Median	366410000	253870000	112540000	0	0	0	10480000	5153100	5327400	245630000	181370000	64259000	110300000	67353000	42952000	56092	2040	52814	340786;340787;340788;340789;340790	459685;459686	459686	2101		2	
VPLAFAMVK	1	Unmodified	974.56231	0.56230947	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	69.471	69.322	2	0.012482	60140	160511_QHF_FH_JSI12i_3	55.676	38.311			1.1345	1.1225	3.8893	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2206	1.1538	NaN	1	0	Median	1.0546	1.0921	NaN	1	0	Median	45566000	20456000	25109000	0	0	0	0	0	0	23036000	11109000	11927000	22530000	9346800	13183000	56093	557	52815	340791;340792	459687	459687			1	
VPLAIVNK	1	Unmodified	852.54329	0.54328858	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	41.796	41.153	2	0.02123	35281	160511_QHF_FH_JSI12i_2	50.966	33.118			0.89572	0.91778	13.185	5	0	Median	NaN	NaN	NaN	0	0	Median	0.79062	0.91771	NaN	1	0	Median	0.95789	0.95396	5.4685	2	0	Median	0.86243	0.92605	25.537	2	0	Median	433730000	231150000	202580000	0	0	0	71060000	36639000	34420000	214690000	110050000	104650000	147980000	84467000	63512000	56094	2517	52816	340793;340794;340795;340796;340797	459688;459689	459688			2	
VPLALHPVVGQPFLK	1	Unmodified	1613.9657	0.96573375	5136	Q9NYV4	CDK12	Cyclin-dependent kinase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	78.82	78.067	3	0.000602	67641	160511_QHF_FH_JSI12i_3	67.275	55.36			0.95951	0.91534	7.8732	4	4	Median	1.0693	0.87761	NaN	1	1	Median	0.81469	0.95469	NaN	1	1	Median	1.0846	1.0226	NaN	1	1	Median	0.86095	0.86312	NaN	1	1	Median	491720000	256290000	235430000	76043000	37011000	39032000	76610000	39263000	37347000	144130000	72416000	71711000	194940000	107600000	87337000	56095	5136	52817	340798;340799;340800;340801	459690;459691;459692;459693	459693			4	
VPLAPITDPQQLQLSPLK	1	Unmodified	1957.1248	0.12481317	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.11	0.314	8	1								3	2	2	2	94.363	94.03	2;3	2.8628E-07	85476	160511_QHF_FH_JSI12i_1	79.805	73.077			0.8921	0.87	30.391	9	1	Median	1.4237	1.1796	51.917	3	1	Plateau	1.0377	1.1824	1.0112	2	0	Median	0.85388	0.83478	5.8434	2	0	Median	0.77986	0.80523	5.03	2	0	Median	489430000	255690000	233740000	100300000	45682000	54614000	119660000	61946000	57717000	158570000	88149000	70417000	110900000	59916000	50989000	56096	1373	52818	340802;340803;340804;340805;340806;340807;340808;340809;340810	459694;459695;459696;459697;459698;459699;459700;459701;459702;459703;459704;459705;459706;459707	459699			14	
VPLASQGLGPGSTVLLVVDK	1	Unmodified	1949.1197	0.11972779	828	P05161	ISG15	Ubiquitin-like protein ISG15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.696	3	8	5							2	4	4	6	95.781	95.591	2;3	1.1078E-06	83880	160511_QHF_FH_JSI9i_2	89.483	85.24			0.76979	0.79939	35.704	15	2	Median	0.78941	0.66401	5.3196	2	0	Median	0.59782	0.74401	17.779	3	0	Median	0.87082	0.86423	24.185	4	0	Median	1.0037	1.0596	43.245	6	2	Median	465960000	227790000	238180000	69606000	38908000	30698000	88124000	51189000	36934000	138640000	60379000	78262000	169590000	77311000	92282000	56097	828	52819	340811;340812;340813;340814;340815;340816;340817;340818;340819;340820;340821;340822;340823;340824;340825;340826	459708;459709;459710;459711;459712;459713;459714;459715;459716;459717;459718;459719;459720;459721;459722;459723;459724;459725;459726;459727	459717			19	
VPLDPLIGK	1	Unmodified	950.58007	0.58006802	1797	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		61.067	60.382	2	0.035582	53564	160511_QHF_FH_JSI10i_2	38.962	13.226			0.91904	1.0226	7.7815	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7826	0.96789	NaN	1	0	Median	1.0793	1.0805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	236250000	130470000	105770000	0	0	0	81216000	47760000	33456000	155030000	82711000	72318000	0	0	0	56098	1797	52820	340827;340828	459728;459729	459729			2	
VPLEDLSEDPVVGHLGTSTEEGKK	2	Unmodified	2535.2704	0.27042737	5245	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.832	64.542	4	0.030454	55776	160511_QHF_FH_JSI12i_3	25.213	21.55			0.84597	0.84809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84597	0.84809	NaN	1	0	Median	160880000	88027000	72849000	0	0	0	0	0	0	0	0	0	160880000	88027000	72849000	56099	5245	52821	340829	459730	459730			0	
VPLEVQEADEAK	1	Unmodified	1326.6667	0.66671078	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.261	36.649	2	0.00016982	32706	160511_QHF_FH_JSI10i_1	82.417	63.102			0.91526	0.96149	10.627	4	0	Median	1.1758	0.95631	NaN	1	0	Median	0.83329	0.9667	NaN	1	0	Median	0.84841	0.81484	NaN	1	0	Median	0.98739	1.0509	NaN	1	0	Median	4585800000	2329000000	2256800000	869640000	367910000	501730000	1353900000	784170000	569700000	1117100000	537600000	579460000	1245200000	639330000	605900000	56100	1283	52822	340830;340831;340832;340833	459731;459732;459733;459734;459735;459736;459737	459736			7	
VPLFSPNFSEK	1	Unmodified	1263.6499	0.6499385	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	67.17	66.338	2	0.001868	57239	160511_QHF_FH_JSI12i_3	60.434	48.387			0.80345	0.89432	18.295	6	3	Median	0.7986	0.6799	13.481	2	1	Median	0.74529	0.89432	0.39958	2	1	Median	1.0188	0.97376	NaN	1	1	Median	0.99007	0.99925	NaN	1	0	Median	807870000	432840000	375030000	177710000	101640000	76064000	235930000	149070000	86853000	182840000	96193000	86649000	211400000	85934000	125460000	56101	4348	52823	340834;340835;340836;340837;340838;340839	459738;459739;459740;459741;459742;459743;459744	459743			7	
VPLHKPTDWQK	2	Unmodified	1347.7299	0.72992016	3958	Q96A26	FAM162A	Protein FAM162A	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	2		1	26.499	25.5	3	0.0034648	20759	160511_QHF_FH_JSI9i_3	57.019	35.388			0.78643	0.8507	31.117	4	2	Median	1.657	1.364	NaN	1	1	Median	0.71867	0.82722	24.907	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72197	0.73359	NaN	1	0	Median	258610000	137030000	121580000	46884000	20396000	26488000	103370000	58987000	44387000	0	0	0	108350000	57648000	50702000	56102	3958	52824	340840;340841;340842;340843	459745;459746;459747;459748;459749;459750;459751	459748			7	
VPLIGFAGAPWTLMTYMVEGGGSSTMAQAK	1	Unmodified	3070.4966	0.49662103	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	100.15	92.568	3	1.5864E-48	55444	160513_QHF_FH_JSI10Kac_6	151.91	140.06			0.74084	0.82597	3.2407	2	1	Median	NaN	NaN	NaN	0	0	Median	0.6768	0.80726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81095	0.84512	NaN	1	1	Median	368620000	190350000	178280000	0	0	0	256740000	141870000	114870000	0	0	0	111890000	48477000	63409000	56103	843	52825	340844;340845	459752;459753	459753			2	
VPLILVGNK	1	Unmodified	951.6117	0.6117025	5598	Q9Y3L5	RAP2C	Ras-related protein Rap-2c	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		3	9							2	3	4	3	58.617	57.834	2	0.00059897	51145	160511_QHF_FH_JSI12i_3	77.674	0			1.1697	1.1506	9.0929	12	0	Median	1.4535	1.1936	0.45941	2	0	Median	1.019	1.1409	6.5309	3	0	Plateau	1.1915	1.1067	8.2441	4	0	Median	1.1789	1.1706	13.035	3	0	Median	842070000	394490000	447580000	88731000	39006000	49725000	171020000	88723000	82292000	309920000	129200000	180720000	272410000	137560000	134840000	56104	5598	52826	340846;340847;340848;340849;340850;340851;340852;340853;340854;340855;340856;340857	459754;459755;459756;459757;459758;459759;459760;459761;459762;459763;459764;459765	459765			12	
VPLLLEEQGVVDYFLR	0	Unmodified	1889.0299	0.02985015	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	102.29	102.18	2;3	1.6399E-08	90775	160511_QHF_FH_JSI10i_2	140.03	129.97			1.0709	1.1274	23.112	7	0	Median	1.2731	1.083	24.673	2	0	Median	0.59835	0.71793	NaN	1	0	Median	1.2427	1.2596	15.674	2	0	Median	0.93989	1.0588	15.093	2	0	Median	1186500000	554480000	632040000	247140000	100520000	146620000	149450000	96365000	53080000	547830000	241980000	305850000	242100000	115610000	126490000	56105	1126	52827	340858;340859;340860;340861;340862;340863;340864	459766;459767;459768;459769;459770	459770			5	
VPLLLHQK	1	Unmodified	946.59639	0.59638679	5452	Q9UNY4	TTF2	Transcription termination factor 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	30.866	30.801	3	0.0075989	25995	160511_QHF_FH_JSI12i_3	43.808	24.021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56106	5452	52828	340865	459771	459771			1	
VPLLTAGAPALGFGVK	1	Unmodified	1509.8919	0.89190011	1088	P16066	NPR1	Atrial natriuretic peptide receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	1	2	92.798	92.312	3	0.00011068	81204	160511_QHF_FH_JSI11i_2	68.044	62.561			0.93454	0.97096	11.587	4	0	Median	1.2053	1.0434	NaN	1	0	Median	0.71214	0.84351	NaN	1	0	Median	1.0694	1.0756	NaN	1	0	Median	0.81667	0.90351	NaN	1	0	Median	63366000	31455000	31910000	14118000	6412700	7705800	15691000	9014900	6675800	18599000	9462700	9136800	14957000	6565000	8391800	56107	1088	52829	340866;340867;340868;340869;340870;340871	459772;459773;459774;459775;459776;459777	459774			6	
VPLPSLSPTMQAGTIAR	0	Unmodified	1737.9447	0.94474031	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							1	2	3	2	77.422	76.942	3	1.1092E-17	68464	160511_QHF_FH_JSI10i_2	101.39	89.946			1.0465	0.99216	20.083	7	3	Median	1.2505	1.0646	NaN	1	0	Median	1.2539	1.4061	NaN	1	0	Median	1.0465	0.99216	21.792	3	2	Median	0.89109	0.93095	2.1812	2	1	Median	290240000	144510000	145730000	49401000	21998000	27403000	32849000	14062000	18787000	136470000	70481000	65992000	71519000	37973000	33546000	56108	970	52830	340872;340873;340874;340875;340876;340877;340878;340879	459778;459779;459780;459781;459782;459783	459782			6	
VPLQGFAALEGMNGIQK	1	Unmodified	1771.9291	0.92909025	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.599	1	5	2							1	1	3	3	87.096	86.585	2;3	1.1251E-06	76915	160511_QHF_FH_JSI10i_2	105.14	93.697			0.98597	1.0005	29.69	8	2	Median	1.1699	0.99368	NaN	1	0	Median	0.80521	0.96132	NaN	1	0	Median	0.99959	1.0073	45.579	3	1	Median	0.97254	1.0612	24.581	3	1	Median	300100000	159170000	140930000	52091000	28023000	24068000	63693000	33056000	30637000	101390000	53985000	47405000	82926000	44110000	38816000	56109	3290	52831	340880;340881;340882;340883;340884;340885;340886;340887	459784;459785;459786;459787;459788;459789;459790	459790			6	
VPLQTLHMTSENQEK	1	Unmodified	1753.8669	0.86688392	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	37.312	37.03	3	0.00045582	32368	160511_QHF_FH_JSI11i_3	71.692	60.421			1.1002	1.0716	9.4744	4	3	Median	NaN	NaN	NaN	0	0	Median	0.8832	1.0752	NaN	1	0	Median	1.1002	1.0174	6.8525	2	2	Median	1.1924	1.2211	NaN	1	1	Median	308960000	149240000	159720000	0	0	0	35903000	20168000	15735000	175230000	85018000	90212000	97827000	44054000	53772000	56110	3087	52832	340888;340889;340890;340891	459791;459792;459793;459794;459795	459792			5	
VPLSEFDFSWSK	1	Unmodified	1440.6925	0.6925316	5042	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.821	88.265	2	0.012492	77699	160511_QHF_FH_JSI11i_2	54.784	36.004			1.2331	1.2427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2331	1.2427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	69430000	27896000	41534000	0	0	0	0	0	0	69430000	27896000	41534000	0	0	0	56111	5042	52833	340892	459796	459796			1	
VPLSQLLTSEDMTVSQR	0	Unmodified	1902.9721	0.97207728	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.696	1	3	4							1	2	2	3	82.244	81.868	2;3	2.3586E-11	73023	160511_QHF_FH_JSI11i_3	125.41	109.81			1.0672	1.0873	16.783	8	1	Median	1.3459	1.1584	NaN	1	0	Median	0.8914	1.0679	4.974	2	0	Median	0.93773	0.87909	21.621	2	0	Median	1.1983	1.207	11.239	3	1	Median	328390000	168190000	160200000	38632000	17985000	20647000	69997000	43659000	26338000	102250000	48370000	53879000	117510000	58172000	59337000	56112	6	52834	340893;340894;340895;340896;340897;340898;340899;340900	459797;459798;459799;459800;459801;459802;459803;459804;459805;459806;459807;459808	459797			12	
VPLTPQEKR	1	Unmodified	1066.6135	0.61349341	3301	Q86SF2	GALNT7	N-acetylgalactosaminyltransferase 7	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			4							2	1	1		25.937	24.937	3	0.053089	21055	160511_QHF_FH_JSI11i_3	13.592	5.7871			2.9263	1.3181	62.305	4	0	Linear	2.9518	2.3903	56.146	2	0	Median	4.3766	4.9823	NaN	1	0	Median	1.4252	1.361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1169100000	397380000	771760000	587330000	153170000	434160000	157690000	27064000	130630000	424120000	217150000	206960000	0	0	0	56113	3301	52835	340901;340902;340903;340904	459809;459810	459809			2	
VPLVAEK	1	Unmodified	754.45889	0.45889025	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		83.194	82.832	2	0.057163	75379	160511_QHF_FH_JSI11i_1	46.37	12.632			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5948600	5948600	0	0	0	0	0	0	0	5948600	5948600	0	0	0	0	56114	1519	52836	340905	459811	459811			1	
VPLVAPEDLRDDIIENAPTTHTEEYSGEEK	1	Unmodified	3366.6103	0.61032469	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	2	1	81.551	81.078	4	1.5593E-16	72348	160511_QHF_FH_JSI11i_3	85.814	80.384			0.8681	0.92977	19.518	6	2	Median	0.98436	0.83405	NaN	1	0	Median	0.7651	0.92977	2.4977	2	1	Median	0.80828	0.7776	27.869	2	1	Median	1.1479	1.1545	NaN	1	0	Median	631540000	343700000	287840000	71182000	35112000	36070000	177010000	107260000	69748000	304400000	165020000	139380000	78947000	36303000	42643000	56115	197	52837	340906;340907;340908;340909;340910;340911	459812;459813;459814;459815;459816;459817;459818;459819;459820;459821;459822	459814			11	
VPMTSGVK	1	Unmodified	817.43677	0.4367746	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		14.913	14.487	2	0.019783	11540	160511_QHF_FH_JSI11i_2	46.426	21.427			0.84476	0.95547	3.5839	2	0	Median	NaN	NaN	NaN	0	0	Median	0.78042	0.97999	NaN	1	0	Median	0.9144	0.93156	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	380520000	209460000	171050000	0	0	0	105210000	54340000	50871000	275310000	155120000	120180000	0	0	0	56116	1103	52838	340912;340913	459823	459823			1	
VPNDKYYGAQTVR	1	Acetyl (K)	1551.7682	0.76815616	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	0.617						4	6	1		1	4	4	2	41.37	30.844	2;3	0.0018326	20240	160513_QHF_FH_JSI11Kac_4	75.695	50.31			0.8374	0.91963	17.625	11	0	Median	1.2173	0.96517	NaN	1	0	Median	0.83947	0.99977	6.1209	4	0	Median	0.80426	0.78835	14.799	4	0	Median	0.86255	0.93735	23.979	2	0	Median	176600000	90244000	86355000	31638000	13781000	17858000	48300000	24313000	23987000	90719000	48912000	41807000	5941700	3238000	2703700	56117	887	52839	340914;340915;340916;340917;340918;340919;340920;340921;340922;340923;340924	459824;459825;459826;459827;459828;459829;459830;459831	459828	627		8	
VPNEEDPSLDRPFISEGTTLK	1	Unmodified	2343.1594	0.15942035	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		1.67	0.471	1	2								1	1	1		64.026	63.414	3	0.061931	55335	160511_QHF_FH_JSI11i_2	22.375	14.923			1.1285	0.95744	26.989	3	0	Median	1.1285	0.95744	NaN	1	0	Median	0.63879	0.7412	NaN	1	0	Median	1.2865	1.2713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77407000	39148000	38259000	21841000	8579400	13261000	29145000	19380000	9764300	26421000	11188000	15233000	0	0	0	56118	1462	52840	340925;340926;340927	459832	459832			1	
VPNLSQFV	0	Unmodified	902.48617	0.48616764	1904	P59780	AP3S2	AP-3 complex subunit sigma-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	81.444	81.1	2	0.00811	73910	160511_QHF_FH_JSI11i_1	57.463	57.463			0.8583	0.84964	15.963	3	1	Median	NaN	NaN	NaN	0	0	Median	0.56074	0.66322	NaN	1	1	Median	0.93491	0.89371	NaN	1	0	Median	0.8583	0.84964	NaN	1	0	Median	39390000	22368000	17022000	0	0	0	15879000	10965000	4914800	10799000	5542700	5255900	12712000	5860300	6851700	56119	1904	52841	340928;340929;340930	459833;459834;459835;459836	459834			4	
VPNQYTHLSGLLDIFK	1	Unmodified	1843.9832	0.98323431	2612	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	99.147	99.157	3	3.1471E-05	85942	160511_QHF_FH_JSI12i_3	82.248	63.653			1.027	1.0097	6.3248	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1082	1.0559	NaN	1	0	Median	0.95182	0.96552	NaN	1	0	Median	86708000	41748000	44960000	0	0	0	0	0	0	29578000	13044000	16534000	57130000	28704000	28426000	56120	2612	52842	340931;340932	459837;459838;459839;459840;459841;459842	459841			6	
VPNSNPPEYEFFWGLR	0	Unmodified	1950.9264	0.92644771	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	3	2	1	97.312	97.002	3	2.4393E-05	84713	160511_QHF_FH_JSI9i_2	64.136	45.998			1.0593	1.1021	7.5113	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1865	1.1622	NaN	1	1	Median	0.94568	1.045	NaN	1	0	Median	31849000	16441000	15408000	0	0	0	0	0	0	11119000	3888200	7230800	20730000	12553000	8177700	56121	5436	52843	340933;340934;340935;340936;340937;340938;340939	459843;459844;459845;459846;459847;459848;459849;459850;459851	459846			9	
VPPAINQFTQALDR	0	Unmodified	1568.8311	0.83109076	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.8	8	10	4					4		6	5	9	6	77.791	75.59	2;3	1.9772E-81	67629	160511_QHF_FH_JSI11i_2	212.59	194.17			1.0099	1.0656	10.621	25	4	Median	1.2899	1.0664	6.5499	6	0	Median	0.91331	1.0813	6.5289	5	1	Median	0.99917	1.0143	13.975	8	2	Median	0.94299	0.98283	8.0553	6	1	Median	9278200000	4587500000	4690700000	1748700000	772930000	975770000	2050300000	1031900000	1018400000	3091800000	1577600000	1514200000	2387400000	1205000000	1182400000	56122	2007	52844	340940;340941;340942;340943;340944;340945;340946;340947;340948;340949;340950;340951;340952;340953;340954;340955;340956;340957;340958;340959;340960;340961;340962;340963;340964;340965	459852;459853;459854;459855;459856;459857;459858;459859;459860;459861;459862;459863;459864;459865;459866;459867;459868;459869;459870;459871;459872;459873;459874;459875;459876;459877;459878;459879;459880;459881;459882;459883;459884;459885;459886;459887;459888;459889;459890;459891;459892;459893;459894;459895;459896;459897;459898;459899;459900	459884			49	
VPPATAFEGHMLLSGLEPFR	0	Unmodified	2168.1088	0.10884553	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	98.475	98.494	3	3.1216E-06	85390	160511_QHF_FH_JSI12i_3	81.967	72.87			1.0649	1.0734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0649	1.0734	NaN	1	0	Median	51591000	23672000	27919000	0	0	0	0	0	0	0	0	0	51591000	23672000	27919000	56123	4303	52845	340966	459901;459902	459902			2	
VPPAVIIPPAAPLSGR	0	Unmodified	1553.9293	0.92934824	4714	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	79.055	77.853	3	0.056321	67252	160511_QHF_FH_JSI12i_2	24.793	19.616			0.56837	0.64466	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56837	0.64466	NaN	1	1	Median	10525000	5262400	5262800	0	0	0	0	0	0	0	0	0	10525000	5262400	5262800	56124	4714	52846	340967	459903	459903			1	
VPPFTFHVK	1	Unmodified	1070.5913	0.59130141	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.47	4.54		8	18						4	5	5	10	10	54.831	53.068	3	1.6839E-05	44294	160511_QHF_FH_JSI10i_3	85.731	71.524			0.92815	0.94555	30.307	16	6	Median	1.0853	0.90104	15.382	5	2	Median	0.8227	0.96326	18.055	3	0	Plateau	1.0771	1.0276	16.339	4	2	Median	1.345	1.3762	59.187	4	2	Linear	2427200000	1190600000	1236600000	402610000	183570000	219050000	332230000	175760000	156470000	775430000	355870000	419550000	916930000	475410000	441520000	56125	3085	52847	340968;340969;340970;340971;340972;340973;340974;340975;340976;340977;340978;340979;340980;340981;340982;340983;340984;340985;340986;340987;340988;340989;340990;340991;340992;340993;340994;340995;340996;340997	459904;459905;459906;459907;459908;459909;459910;459911;459912;459913;459914;459915;459916;459917;459918;459919;459920;459921;459922;459923;459924;459925;459926;459927;459928;459929;459930;459931;459932;459933;459934;459935;459936;459937;459938;459939;459940;459941;459942;459943;459944;459945;459946;459947;459948;459949;459950;459951;459952;459953;459954;459955;459956;459957	459916			54	
VPPFTFHVKK	2	Acetyl (K)	1240.6968	0.69682911	3085	Q6NZI2	PTRF	Polymerase I and transcript release factor	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	66.411	56.658	3	0.033565	30597	160513_QHF_FH_JSI11Kac_6	39.179	28.427			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56126	3085	52848	340998;340999	459958;459959	459958			2	
VPPGYHPLDVEK	1	Unmodified	1349.698	0.69795133	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			36.447	35.445	3	0.059736	31045	160511_QHF_FH_JSI10i_2	16.026	0.13607			0.61625	0.62056	6.1862	2	0	Median	0.7676	0.64831	NaN	1	0	Median	0.49474	0.594	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	105900000	67878000	38022000	52969000	35936000	17032000	52932000	31942000	20990000	0	0	0	0	0	0	56127	2636	52849	341000;341001	459960	459960			1	
VPPIKPNAGEESVMNLDK	2	Unmodified	1936.9928	0.99281272	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.786	2	3	4							2	2	2	3	55.822	55.097	3	4.3073E-05	49057	160511_QHF_FH_JSI11i_3	75.97	65.116			0.91952	0.88187	13.173	8	1	Median	0.95694	0.81685	9.0159	2	1	Median	0.85145	1.0093	8.6243	2	0	Median	0.96743	0.92644	5.155	2	0	Median	0.75942	0.78337	14.911	2	0	Median	3204600000	1680200000	1524400000	420200000	177050000	243150000	555070000	312370000	242690000	1009700000	516990000	492720000	1219700000	673820000	545850000	56128	1367	52850	341002;341003;341004;341005;341006;341007;341008;341009;341010	459961;459962;459963;459964;459965;459966;459967;459968;459969;459970;459971;459972;459973;459974;459975;459976;459977;459978;459979	459963			19	
VPPNGLVVYCGTIVTEEGK	1	Unmodified	2031.0347	0.034677532	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		73.033	72.699	3	0.010378	66136	160511_QHF_FH_JSI11i_1	38.377	32.717			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56129	2010	52851	341011	459980	459980			1	
VPPPPPIAR	0	Unmodified	942.56509	0.56508666	882	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								2	1	2	3	32.202	31.484	2	0.009561	28004	160511_QHF_FH_JSI11i_1	50.966	30.411			0.89064	0.88046	12.453	8	0	Median	1.0674	0.89388	0.093182	2	0	Median	0.93253	1.0853	NaN	1	0	Median	0.90858	0.89756	4.7669	2	0	Median	0.71987	0.76621	4.5515	3	0	Median	1878700000	1038900000	839800000	383910000	190380000	193530000	373910000	205320000	168590000	501260000	271130000	230130000	619650000	372090000	247560000	56130	882	52852	341012;341013;341014;341015;341016;341017;341018;341019	459981;459982;459983;459984;459985;459986;459987;459988;459989;459990;459991;459992;459993;459994	459981			14	
VPPPWLIAMQR	0	Unmodified	1306.722	0.72199801	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	84.049	74.924	2	0.049943	39932	160513_QHF_FH_JSI12Kac_6	37.727	37.727			0.98238	1.0006	9.9473	3	0	Median	1.3096	1.1255	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98238	0.92355	NaN	1	0	Median	0.92552	1.0006	NaN	1	0	Median	172440000	88382000	84055000	69773000	34348000	35425000	0	0	0	78140000	40496000	37644000	24524000	13538000	10987000	56131	2412	52853	341020;341021;341022	459995	459995			1	
VPQIEVETHK	1	Unmodified	1178.6295	0.62953741	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	26.513	25.619	3	1.9047E-05	21337	160511_QHF_FH_JSI11i_2	87.184	80.452			0.96487	1.0253	12.701	4	0	Median	1.2888	1.086	NaN	1	0	Median	0.6702	0.81651	NaN	1	0	Median	0.99948	1.0097	NaN	1	0	Median	0.93146	1.0412	NaN	1	0	Median	439730000	221220000	218510000	64746000	22575000	42171000	85174000	46194000	38979000	170540000	92611000	77934000	119270000	59838000	59430000	56132	2517	52854	341023;341024;341025;341026	459996;459997;459998;459999	459998			4	
VPQPVPLIAQKPVGEMK	2	Acetyl (K);Oxidation (M)	1888.0492	0.049205384	3254	Q7Z333	SETX	Probable helicase senataxin	yes	yes	1	0	1	1		By MS/MS		By MS/MS	13	0						2					1		1	77.268	68.87	3	0.011954	34255	160513_QHF_FH_JSI12Kac_3	43.791	36.9			0.88197	1.0018	34.393	2	0	Median	NaN	NaN	NaN	0	0	Median	0.65762	0.78554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1829	1.2776	NaN	1	0	Median	5261800	2900900	2360800	0	0	0	2622800	1477400	1145300	0	0	0	2639000	1423500	1215500	56133	3254	52855	341027;341028	460000;460001	460000	2814	2233	2	
VPQVSTPTLVEVSR	0	Unmodified	1510.8355	0.83550744	50	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0				By MS/MS	1	0	1												1	60.824	60.17	3	0.0043887	54645	160511_QHF_FH_JSI12i_1	32.997	18.028		+	0.32525	0.32401	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.32525	0.32401	NaN	1	1	Median	16262000	13824000	2438000	0	0	0	0	0	0	0	0	0	16262000	13824000	2438000	56134	50	52856	341029	460002	460002			1	
VPSENVLGEVGSGFK	1	Unmodified	1517.7726	0.77257283	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	68.82	67.906	2	0.0038951	59241	160511_QHF_FH_JSI11i_2	54.65	36.912			0.90599	0.8299	12.574	4	1	Median	0.95759	0.8299	0.4079	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71436	0.72498	NaN	1	0	Median	0.86447	0.98536	NaN	1	0	Median	200310000	107520000	92791000	92695000	48642000	44053000	0	0	0	59213000	31794000	27419000	48405000	27086000	21319000	56135	1675	52857	341030;341031;341032;341033	460003;460004;460005;460006	460005			4	
VPSGFYVGSYVHGAMQSPSLHK	1	Unmodified	2347.1419	0.14193657	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	4	4	3	70.533	65.471	3;4	4.7577E-48	34367	160513_QHF_FH_JSI9Kac_6	181.69	168.64			0.92428	0.89021	8.5592	15	1	Median	1.0653	0.87754	11.532	4	0	Median	0.73414	0.85056	5.1593	4	0	Median	0.93858	0.91125	7.2523	4	0	Median	0.94013	0.96229	9.6319	3	1	Plateau	3274500000	1793700000	1480900000	660690000	322290000	338400000	1593600000	945440000	648110000	817100000	425510000	391590000	203210000	100430000	102780000	56136	1568	52858	341034;341035;341036;341037;341038;341039;341040;341041;341042;341043;341044;341045;341046;341047;341048	460007;460008;460009;460010;460011;460012;460013;460014;460015;460016;460017;460018;460019;460020;460021;460022;460023;460024;460025;460026;460027;460028;460029;460030;460031;460032;460033;460034;460035;460036	460027			30	
VPSGFYVGSYVHGAMQSPSLHK	1	Oxidation (M)	2363.1369	0.13685119	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	1	0	By MS/MS				16	0									2	2				65.174	56.274	4	2.408E-11	29787	160513_QHF_FH_JSI9Kac_6	99.11	90.823			1.1695	0.99472	9.0087	2	1	Median	1.1695	0.99472	9.0087	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151360000	72459000	78906000	151360000	72459000	78906000	0	0	0	0	0	0	0	0	0	56137	1568	52858	341049;341050	460037;460038	460037		1233	2	
VPSGQNADVQK	1	Unmodified	1141.5728	0.57275081	4614	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	8.9577	8.6354	2	0.010764	6323	160511_QHF_FH_JSI10i_1	46.462	15.898			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56138	4614	52859	341051;341052;341053	460039;460040;460041	460041			3	
VPSLVGSFIR	0	Unmodified	1073.6233	0.62332982	2093	P78417	GSTO1	Glutathione S-transferase omega-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.288	73.494	2	0.0099773	65418	160511_QHF_FH_JSI11i_3	48.283	22.546			1.3378	1.0714	15.197	4	0	Linear	1.4885	1.2162	NaN	1	0	Median	0.99642	1.1671	NaN	1	0	Median	1.0261	0.98355	NaN	1	0	Median	0.85235	0.87737	NaN	1	0	Median	1100100000	507270000	592810000	348570000	138420000	210150000	267300000	136930000	130360000	302620000	136350000	166270000	181600000	95576000	86020000	56139	2093	52860	341054;341055;341056;341057	460042;460043	460042			2	
VPSMVSTSLNAEALQYLQGYLQAASVTLL	0	Unmodified	3066.5947	0.59473839	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		104.44	104.35	3	4.7487E-14	92050	160511_QHF_FH_JSI11i_2	82.849	70.997			1.1418	1.1431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1418	1.1431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28707000	9207900	19499000	0	0	0	0	0	0	28707000	9207900	19499000	0	0	0	56140	1844	52861	341058	460044	460044			1	
VPSPPDEHQEAENAVSSGNR	0	Unmodified	2118.9566	0.95663822	4525	Q9BXS6	NUSAP1	Nucleolar and spindle-associated protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		29.185	28.967	3	4.263E-05	25703	160511_QHF_FH_JSI11i_1	77.391	67.642			1.1801	1.1382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1801	1.1382	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28620000	15680000	12940000	0	0	0	0	0	0	28620000	15680000	12940000	0	0	0	56141	4525	52862	341059	460045	460045			1	
VPSTEAEALASSLMGLFEK	1	Unmodified	1978.9921	0.99214402	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	4.78	6	9	5						3	4	5	7	7	102.24	100.91	2;3	6.34E-26	90566	160511_QHF_FH_JSI9i_2	210.36	175.68			1.0486	0.9892	13.233	22	10	Median	1.1985	0.9466	4.2747	4	2	Linear	0.79571	0.95614	20.586	5	1	Median	1.054	1.0182	10.012	7	4	Median	0.96398	1.0271	14.51	6	3	Median	9106100000	4582700000	4523400000	1765300000	764080000	1001200000	1688800000	954160000	734620000	3063300000	1533300000	1530000000	2588700000	1331100000	1257600000	56142	1702	52863	341060;341061;341062;341063;341064;341065;341066;341067;341068;341069;341070;341071;341072;341073;341074;341075;341076;341077;341078;341079;341080;341081;341082	460046;460047;460048;460049;460050;460051;460052;460053;460054;460055;460056;460057;460058;460059;460060;460061;460062;460063;460064;460065;460066;460067;460068;460069;460070;460071;460072;460073	460062			28	
VPSTETEALASNLMGMFEK	1	Unmodified	2053.97	0.97002836	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	101.77	101.64	3	8.6607E-11	89531	160511_QHF_FH_JSI9i_2	123.59	103.54			0.86101	0.83753	11.616	2	2	Median	0.92284	0.77149	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80333	0.90922	NaN	1	1	Median	489670000	258950000	230720000	228550000	121320000	107240000	0	0	0	0	0	0	261110000	137630000	123480000	56143	1368	52864	341083;341084	460074;460075	460075			2	
VPSVSSSALVSSLHLLK	1	Unmodified	1722.988	0.98798534	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.46		3	8						3	4	4	4	2	85.878	83.725	2;3	3.5482E-16	74997	160511_QHF_FH_JSI12i_3	131.48	118.36			0.91502	0.96243	10.177	14	1	Median	1.1978	0.96138	5.7983	4	0	Linear	0.84717	0.9586	6.6215	4	0	Median	0.92462	0.92699	13.303	4	1	Median	0.84109	0.8602	9.092	2	0	Median	5628300000	2708200000	2920100000	1507500000	653870000	853670000	1139800000	594760000	545070000	1549700000	762040000	787660000	1431300000	697540000	733740000	56144	5708	52865	341085;341086;341087;341088;341089;341090;341091;341092;341093;341094;341095;341096;341097;341098	460076;460077;460078;460079;460080;460081;460082;460083;460084;460085;460086;460087;460088;460089;460090;460091;460092;460093;460094;460095;460096;460097;460098;460099;460100	460098			25	
VPTANVSVVDLTCR	0	Unmodified	1529.7872	0.78717704	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.09	8	7	5			5	6	5		5	10	10	11	66.305	61.372	2;3	1.0638E-15	55973	160511_QHF_FH_JSI12i_1	152.16	129.63			0.90652	0.9588	19.091	36	2	Median	1.0425	0.87489	10.551	5	1	Median	0.82693	0.9821	6.094	10	0	Median	0.79889	0.7729	9.0469	10	1	Median	1.1278	1.2382	4.8159	11	0	Median	27289000000	14636000000	12653000000	4077400000	2028200000	2049200000	6968000000	3794900000	3173100000	9818800000	5807200000	4011600000	6424700000	3005300000	3419400000	56145	812	52866	341099;341100;341101;341102;341103;341104;341105;341106;341107;341108;341109;341110;341111;341112;341113;341114;341115;341116;341117;341118;341119;341120;341121;341122;341123;341124;341125;341126;341127;341128;341129;341130;341131;341132;341133;341134	460101;460102;460103;460104;460105;460106;460107;460108;460109;460110;460111;460112;460113;460114;460115;460116;460117;460118;460119;460120;460121;460122;460123;460124;460125;460126;460127;460128;460129;460130;460131;460132;460133;460134;460135;460136;460137;460138;460139;460140;460141;460142;460143;460144;460145;460146;460147;460148;460149;460150;460151;460152;460153;460154;460155	460116			55	
VPTANVSVVDLTCRLEK	1	Unmodified	1900.0088	0.0087971324	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	5.77	3	7	8					3	3	5	6	8	5	73.002	70.05	2;3	5.1049E-10	63336	160511_QHF_FH_JSI11i_3	168.5	155.29			1.1289	1.1485	17.802	24	4	Median	1.5019	1.2559	13.055	5	0	Median	0.9948	1.184	13.759	6	2	Median	1.021	0.97528	13.574	8	2	Median	1.2275	1.282	14.132	5	0	Median	42335000000	20405000000	21930000000	3334600000	1361500000	1973100000	11961000000	5677500000	6283500000	20494000000	10263000000	10231000000	6545200000	3102300000	3442900000	56146	812	52867	341135;341136;341137;341138;341139;341140;341141;341142;341143;341144;341145;341146;341147;341148;341149;341150;341151;341152;341153;341154;341155;341156;341157;341158	460156;460157;460158;460159;460160;460161;460162;460163;460164;460165;460166;460167;460168;460169;460170;460171;460172;460173;460174;460175;460176;460177;460178;460179;460180;460181;460182;460183;460184;460185;460186;460187;460188;460189;460190;460191;460192;460193;460194;460195;460196;460197;460198;460199;460200;460201;460202;460203;460204;460205;460206;460207	460158			52	
VPTANVSVVDLTCRLEKPAK	2	Acetyl (K)	2238.2042	0.20420248	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	2			By MS/MS		15	0								1				1		80.651	70.084	3	0.033948	37144	160513_QHF_FH_JSI11Kac_5	43.116	34.636			0.2051	0.20312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2051	0.20312	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27734000	23283000	4450600	0	0	0	0	0	0	27734000	23283000	4450600	0	0	0	56147	812	52868	341159	460208	460208			1	
VPTEENEMSSEADMECLNQRPPENPDTDK	1	Unmodified	3361.4021	0.40206453	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	1			By MS/MS		1	0	2											2		53.248	52.837	3;4	0.0011466	47783	160511_QHF_FH_JSI11i_1	33.676	31.671			0.86614	0.82216	15.977	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86614	0.82216	15.977	2	1	Median	NaN	NaN	NaN	0	0	Median	91009000	39794000	51216000	0	0	0	0	0	0	91009000	39794000	51216000	0	0	0	56148	3852	52869	341160;341161	460209;460210	460209			2	
VPTIFLSK	1	Unmodified	903.54295	0.54295423	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.322	72.025	2	0.018223	62476	160511_QHF_FH_JSI12i_3	46.016	17.487			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56149	3163	52870	341162	460211	460211			1	
VPTLAVPAISLPDDVR	0	Unmodified	1661.9352	0.93522148	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0		By matching	By MS/MS		1	0	2										1	1		94.894	94.746	3	0.0049897	86160	160511_QHF_FH_JSI11i_1	34.928	27.52			1.1928	1.2576	14.575	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2217	1.3942	NaN	1	0	Median	1.1645	1.1345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28070000	13914000	14156000	0	0	0	13839000	7323200	6515400	14231000	6591100	7640300	0	0	0	56150	1273	52871	341163;341164	460212	460212			1	
VPTLAVPAISLPDDVRR	0	Unmodified	1818.0363	0.036332512	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	84.098	83.477	3	0.020931	73561	160511_QHF_FH_JSI9i_2	30.107	19.291			1.0076	1.1137	10.794	5	0	Median	1.3574	1.1801	NaN	1	0	Median	0.91324	1.1137	NaN	1	0	Median	1.0076	1.0041	NaN	1	0	Median	1.1462	1.1601	17.16	2	0	Median	143710000	69223000	74489000	35842000	16948000	18894000	41971000	21942000	20030000	31739000	17290000	14449000	34159000	13043000	21116000	56151	1273	52872	341165;341166;341167;341168;341169	460213;460214;460215;460216	460213			4	
VPTTEKPTVTVNFR	1	Unmodified	1587.8621	0.86205654	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		45.291	43.713	3	0.006205	36411	160511_QHF_FH_JSI10i_3	43.69	31.27			0.94438	0.91423	18.069	2	0	Median	1.2622	1.0388	NaN	1	0	Median	0.70661	0.80458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	288610000	151950000	136670000	118730000	52303000	66423000	169890000	99643000	70243000	0	0	0	0	0	0	56152	2217	52873	341170;341171;341172	460217;460218;460219;460220;460221;460222	460218			6	
VPTWGPLR	0	Unmodified	924.51814	0.51813647	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	50.79	49.875	2	0.0063937	40915	160511_QHF_FH_JSI9i_3	62.714	38.742			0.81886	0.92571	18.237	8	0	Median	1.2761	1.0502	4.4662	2	0	Median	0.79519	0.93389	0.5424	2	0	Median	0.89262	0.86725	8.5237	2	0	Median	0.67365	0.69619	20.932	2	0	Median	933490000	465240000	468250000	293520000	123770000	169750000	219780000	116230000	103560000	262540000	132870000	129660000	157650000	92369000	65279000	56153	2325	52874	341173;341174;341175;341176;341177;341178;341179;341180	460223;460224;460225;460226	460225			4	
VPVASPSAHNISSSGGAPDR	0	Unmodified	1904.9341	0.93405228	3214	Q7KZI7	MARK2	Serine/threonine-protein kinase MARK2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		2	2								2	2		26.943	26.482	3	6.4066E-06	22678	160511_QHF_FH_JSI11i_3	58.49	47.228			0.87504	0.92815	13.825	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83092	1.0235	NaN	1	1	Median	0.9215	0.84171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	67223000	38228000	28996000	0	0	0	20006000	10902000	9104000	47217000	27325000	19892000	0	0	0	56154	3214	52875	341181;341182;341183;341184	460227;460228;460229;460230	460228			4	
VPVASVLI	0	Unmodified	796.50584	0.50584045	4683	Q9H2V7	SPNS1	Protein spinster homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.893	77.461	1;2	0.012791	68902	160511_QHF_FH_JSI9i_1	52.231	52.231			0.65782	0.63897	20.415	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.77012	0.7382	NaN	1	1	Median	0.5619	0.55308	NaN	1	0	Median	20357000	13199000	7158500	0	0	0	0	0	0	8554800	5145800	3409100	11803000	8053100	3749400	56155	4683	52876	341185;341186;341187;341188	460231;460232;460233;460234	460234			3	
VPVATYTNSSQPFR	0	Unmodified	1565.7838	0.78380622	1638	P49005	POLD2	DNA polymerase delta subunit 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		45.942	45.439	3	0.034845	39094	160511_QHF_FH_JSI11i_2	25.185	20.107			0.91004	0.9	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91004	0.9	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33227000	15237000	17991000	0	0	0	0	0	0	33227000	15237000	17991000	0	0	0	56156	1638	52877	341189	460235	460235			1	
VPVDEFDGK	1	Unmodified	1004.4815	0.48147619	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.642	32.04	2	0.013473	28704	160511_QHF_FH_JSI11i_1	46.462	36.048			0.88483	0.84526	6.831	4	0	Median	0.99856	0.81155	NaN	1	0	Median	0.68449	0.78743	NaN	1	0	Median	0.8989	0.88037	NaN	1	0	Median	0.87099	0.91136	NaN	1	0	Median	1179100000	764490000	414660000	271000000	140890000	130110000	326080000	231420000	94665000	346100000	224810000	121290000	235960000	167370000	68588000	56157	3828	52878	341190;341191;341192;341193	460236;460237	460236			2	
VPVDVAYRR	0	Unmodified	1073.5982	0.5981777	2636;1898	Q15149;P58107	PLEC;EPPK1	Plectin;Epiplakin	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			24.688	23.39	3	0.00073994	18890	160511_QHF_FH_JSI9i_3	58.433	41.595			0.84479	0.81424	0.3933	2	1	Median	1.0176	0.8165	NaN	1	1	Median	0.70135	0.81198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	209610000	115270000	94337000	92566000	44320000	48246000	117040000	70948000	46091000	0	0	0	0	0	0	56158	2636;1898	52879	341194;341195	460238;460239;460240	460240			3	
VPVDWSK	1	Unmodified	829.4334	0.43340378	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	30.497	29.897	2	0.04193	26494	160511_QHF_FH_JSI10i_1	46.426	28.864			0.93765	0.87142	8.9929	4	0	Median	1.0641	0.86838	NaN	1	0	Median	0.73094	0.86965	NaN	1	0	Median	1.0659	1.0419	NaN	1	0	Median	0.82619	0.87319	NaN	1	0	Median	1475900000	716890000	759060000	223500000	82596000	140900000	427360000	235650000	191710000	389030000	179970000	209060000	436050000	218670000	217390000	56159	1039	52880	341196;341197;341198;341199	460241	460241			1	
VPVGDQPK	1	Unmodified	838.45487	0.45486751	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.07	9.3364	2	0.023547	6822	160511_QHF_FH_JSI9i_1	54.157	25.008			0.78339	0.62783	NaN	1	1	Median	0.78339	0.62783	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254320000	135810000	118510000	254320000	135810000	118510000	0	0	0	0	0	0	0	0	0	56160	133	52881	341200	460242	460242			1	
VPVGDQPPDIEYQIK	1	Unmodified	1696.8672	0.8672015	1711	P50570	DNM2	Dynamin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	60.965	60.321	2;3	0.00010098	53646	160511_QHF_FH_JSI9i_1	126.76	109.74			0.80875	0.8955	25.171	5	1	Linear	0.98778	0.81329	NaN	1	0	Median	0.76409	0.8955	NaN	1	0	Median	0.77772	0.76884	NaN	1	0	Median	1.0892	1.1397	33.99	2	1	Median	995050000	537540000	457510000	218890000	115460000	103430000	250910000	132650000	118260000	228760000	127950000	100820000	296490000	161490000	135000000	56161	1711	52882	341201;341202;341203;341204;341205	460243;460244;460245;460246;460247;460248;460249;460250;460251;460252;460253;460254;460255	460255			13	
VPVHDVTDASK	1	Unmodified	1166.5932	0.5931519	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.04	5.66	8	6	3				3	3		6	6	5	6	16.229	13.548	2;3	7.043E-05	11045	160511_QHF_FH_JSI11i_2	76.522	65.358			1.0735	1.1085	17.439	23	1	Median	1.2689	1.0309	24.33	6	0	Median	1.0037	1.1957	10.158	6	1	Median	1.2032	1.1632	8.3435	5	0	Median	0.91705	0.98152	21.621	6	0	Median	6138300000	3060000000	3078300000	1281500000	516240000	765250000	1402000000	716690000	685320000	1981700000	1005400000	976330000	1473100000	821690000	651400000	56162	1192	52883	341206;341207;341208;341209;341210;341211;341212;341213;341214;341215;341216;341217;341218;341219;341220;341221;341222;341223;341224;341225;341226;341227;341228	460256;460257;460258;460259;460260;460261;460262;460263;460264;460265;460266;460267;460268;460269;460270;460271;460272;460273;460274;460275;460276;460277;460278;460279;460280	460276			25	
VPVLQLDSGNYLFSTSAICR	0	Unmodified	2239.1307	0.13070318	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.61	100.46	2	0.00050309	88155	160511_QHF_FH_JSI11i_2	74.326	61.966			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56163	1872	52884	341229	460281	460281			1	
VPVMDILK	1	Oxidation (M)	929.52559	0.52558961	5818				yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	64.425	63.525	2	0.0085506	56510	160511_QHF_FH_JSI10i_2	93.262	74.532	+		0.14319	0.15921	7.7007	6	6	Median	0.172	0.14611	NaN	1	1	Median	0.13685	0.16293	4.0081	2	2	Median	0.13909	0.14141	NaN	1	1	Median	0.15548	0.16614	5.2924	2	2	Median	1163300000	1002700000	160560000	166620000	136540000	30085000	322000000	286080000	35928000	292520000	250570000	41950000	382160000	329560000	52593000	56164	5818	52885	341230;341231;341232;341233;341234;341235	460282;460283;460284;460285;460286;460287;460288	460287		2762	7	
VPVPDERFDFLCQYHK	1	Unmodified	2048.9778	0.97783136	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	1		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	71.659	71.077	4	0.00010303	61562	160511_QHF_FH_JSI12i_3	68.944	63.303			1.0077	0.89494	23.831	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0077	1.1178	NaN	1	0	Median	0.77015	0.73213	NaN	1	0	Median	1.0935	1.0939	NaN	1	0	Median	359890000	184400000	175490000	0	0	0	30472000	17447000	13025000	207240000	109700000	97540000	122170000	57248000	64925000	56165	4992	52886	341236;341237;341238	460289;460290	460290			2	
VPVSEGLEHSDLPDGTGEFLDAWLMLVEK	1	Unmodified	3182.5482	0.54818213	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	99.034	89.746	3	0.03515	49311	160513_QHF_FH_JSI12Kac_6	28.047	21.952			1.2217	1.1787	9.2223	2	0	Median	1.2717	1.1043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1737	1.2582	NaN	1	0	Median	152510000	79043000	73465000	64173000	30996000	33176000	0	0	0	0	0	0	88335000	48047000	40289000	56166	3290	52887	341239;341240	460291	460291			1	
VPVVFVTNAGNILQHSK	1	Unmodified	1822.0101	0.010117761	4529	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		8.57	6.43			4						3	3	2	2		78	73.97	2;3	2.2759E-07	67858	160511_QHF_FH_JSI11i_3	124.43	114.65			1.0809	0.96211	9.2852	7	2	Median	1.2066	0.96756	8.2993	3	1	Median	0.72573	0.85155	1.1546	2	1	Median	1.0507	0.9661	3.5596	2	0	Median	NaN	NaN	NaN	0	0	Median	1166600000	629140000	537460000	400620000	198830000	201790000	341470000	204810000	136660000	424510000	225500000	199010000	0	0	0	56167	4529	52888	341241;341242;341243;341244;341245;341246;341247	460292;460293;460294;460295;460296;460297;460298;460299;460300;460301;460302	460292			11	
VPVVHVDEK	1	Unmodified	1020.5604	0.56039521	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	22.063	21.27	3	0.0013161	17655	160511_QHF_FH_JSI12i_2	49.35	40.136			1.0345	1.1933	19.502	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0345	1.2853	NaN	1	0	Median	1.2037	1.1933	NaN	1	0	Median	0.78781	0.88893	NaN	1	0	Median	334380000	147010000	187370000	0	0	0	87707000	39264000	48444000	153930000	67597000	86330000	92744000	40150000	52594000	56168	3734	52889	341248;341249;341250	460303	460303			1	
VPYFNAPVYLENK	1	Unmodified	1552.7926	0.79257999	5116	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.494	74.639	2;3	0.00032835	64511	160511_QHF_FH_JSI12i_2	72.006	54.98			1.2143	1.2793	61.12	4	1	Median	4.4146	3.8323	NaN	1	1	Median	0.80844	0.9778	NaN	1	0	Median	1.3914	1.4	NaN	1	0	Median	1.0597	1.169	NaN	1	0	Median	209710000	96963000	112740000	19354000	3810900	15543000	55653000	31022000	24630000	88757000	39662000	49096000	45944000	22469000	23476000	56169	5116	52890	341251;341252;341253;341254	460304;460305;460306;460307	460304			4	
VPYSIISLLLK	1	Unmodified	1244.7744	0.77441073	1564	P43378	PTPN9	Tyrosine-protein phosphatase non-receptor type 9	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.19	102.01	2	0.0070734	82919	160511_QHF_FH_JSI9i_3	52.579	32.249			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56170	1564	52891	341255	460308	460308			1	
VQAAEHTLR	0	Unmodified	1023.5461	0.54614213	4615	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	4	4	9.0487	8.7738	2;3	0.00022016	6470	160511_QHF_FH_JSI11i_3	61.78	44.549			0.89272	0.94812	25.436	11	1	Median	0.89272	0.76151	NaN	1	0	Median	0.77978	0.94692	0.1792	2	0	Median	0.87834	0.85487	14.479	4	0	Median	1.1994	1.2304	31.784	4	1	Median	1337900000	665180000	672710000	118140000	61946000	56194000	187870000	110460000	77411000	567200000	290120000	277080000	464680000	202660000	262020000	56171	4615	52892	341256;341257;341258;341259;341260;341261;341262;341263;341264;341265;341266	460309;460310;460311;460312;460313;460314;460315;460316;460317;460318;460319;460320	460310			12	
VQAAQSEAK	1	Unmodified	930.47706	0.47705951	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.4205	5.0966	2	0.00045216	2995	160511_QHF_FH_JSI11i_1	80.438	49.72			0.88418	0.96158	11.412	4	0	Median	1.363	1.103	NaN	1	0	Median	0.81107	0.95747	NaN	1	0	Median	0.86056	0.83412	NaN	1	0	Median	0.90845	0.96572	NaN	1	0	Median	3645700000	1805200000	1840400000	896790000	329130000	567650000	808760000	431000000	377760000	878430000	474230000	404200000	1061700000	570880000	490810000	56172	2780	52893	341267;341268;341269;341270	460321;460322;460323;460324;460325;460326;460327	460321			7	
VQAAVELDAQLGR	0	Unmodified	1368.7361	0.73612775	5822				yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.24	103.15	2	0.029459	90911	160511_QHF_FH_JSI11i_2	48.091	24.061	+		0.043775	0.044567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.043775	0.044567	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	140220000	135140000	5087600	0	0	0	0	0	0	140220000	135140000	5087600	0	0	0	56173	5822	52894	341271	460328	460328			1	
VQADDLVK	1	Unmodified	886.476	0.47599688	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	28.076	27.487	2	0.00821	24592	160511_QHF_FH_JSI12i_1	57.177	0			0.97854	1.0651	11.4	4	1	Linear	1.6361	1.3497	NaN	1	1	Median	0.88464	1.0323	NaN	1	0	Median	1.1596	1.1255	NaN	1	0	Median	1.0791	1.1104	NaN	1	0	Median	419610000	204140000	215460000	112520000	48051000	64474000	106390000	60331000	46055000	98656000	48134000	50522000	102040000	47629000	54411000	56174	2806	52895	341272;341273;341274;341275	460329;460330;460331	460330			3	
VQADVPPEILNNVGALHFR	0	Unmodified	2088.1116	0.11162272	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	89.016	88.928	3	6.2336E-05	77126	160511_QHF_FH_JSI12i_3	82.482	73.199			0.37251	0.38458	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37251	0.38458	NaN	1	1	Median	184820000	122780000	62048000	0	0	0	0	0	0	0	0	0	184820000	122780000	62048000	56175	3115	52896	341276	460332	460332			1	
VQAEAERLDQEEAQYQR	0	Unmodified	2061.9716	0.97156	2537	Q14457	BECN1	Beclin-1	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			34.343	33.393	3	0.006633	29320	160511_QHF_FH_JSI10i_2	41.871	32.341			1.0789	1.3277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0789	1.3277	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33887000	18280000	15607000	0	0	0	33887000	18280000	15607000	0	0	0	0	0	0	56176	2537	52897	341277	460333	460333			1	
VQAEDEANGLQTTPASR	0	Unmodified	1785.8493	0.8493196	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.955	29.359	2	2.6252E-11	25638	160511_QHF_FH_JSI9i_1	152.89	130.41			1.0915	0.9965	17.079	4	2	Median	1.1127	0.90038	NaN	1	0	Median	1.1455	1.3326	NaN	1	1	Median	1.0707	1.026	NaN	1	1	Median	0.94652	0.96787	NaN	1	0	Median	201850000	105300000	96549000	50838000	27939000	22899000	48528000	23916000	24612000	36893000	18669000	18224000	65595000	34780000	30815000	56177	1360	52898	341278;341279;341280;341281	460334;460335;460336;460337;460338;460339	460339			6	
VQAELDETK	1	Unmodified	1031.5135	0.5135046	295	O15498	YKT6	Synaptobrevin homolog YKT6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	18.299	17.726	2	0.0050369	15194	160511_QHF_FH_JSI10i_1	57.59	28.441			0.91218	0.93225	27.177	3	1	Plateau	1.7699	1.4456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86961	0.84167	NaN	1	0	Median	1.1004	1.1552	NaN	1	0	Median	423530000	190570000	232960000	124890000	54062000	70825000	0	0	0	161020000	62330000	98694000	137610000	74175000	63439000	56178	295	52899	341282;341283;341284;341285	460340;460341;460342	460341			3	
VQAEYNSIK	1	Unmodified	1050.5346	0.53457439	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	21.15	20.834	2	0.049969	17912	160511_QHF_FH_JSI11i_1	35.826	26.612			0.47067	0.47997	34.404	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38758	0.37633	NaN	1	0	Median	0.57158	0.61217	NaN	1	0	Median	167190000	102880000	64315000	0	0	0	0	0	0	75254000	54958000	20296000	91939000	47920000	44019000	56179	5520	52900	341286;341287	460343	460343			1	
VQAFGWSLPQK	1	Unmodified	1259.6663	0.66625727	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	70.975	70.676	2	1.825E-05	61283	160511_QHF_FH_JSI12i_3	105.98	65.623			1.0572	1.0549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0572	1.0549	NaN	1	1	Median	124900000	57263000	67642000	0	0	0	0	0	0	0	0	0	124900000	57263000	67642000	56180	404	52901	341288	460344	460344			1	
VQAHAAAALINFTEDCPK	1	Unmodified	1954.9571	0.95709591	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5.6	5.2			4						1			3	2	64.245	61.738	2;3	2.45E-50	54766	160511_QHF_FH_JSI11i_3	178.58	163.04			0.94331	0.92694	14.577	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89565	0.86494	8.2024	2	0	Median	1.0307	1.0419	14.951	2	2	Median	844140000	489390000	354750000	0	0	0	0	0	0	322880000	177690000	145190000	521270000	311700000	209570000	56181	127	52902	341289;341290;341291;341292;341293	460345;460346;460347;460348;460349;460350	460347			6	
VQAINVSSR	0	Unmodified	972.53524	0.53524309	3998	Q96C19	EFHD2	EF-hand domain-containing protein D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.06	2	4	1				1			1	2	3	2	21.513	20.066	2	0.00067613	16422	160511_QHF_FH_JSI11i_2	76.221	43.381			0.88474	0.94079	12.722	8	0	Median	1.3732	1.1733	NaN	1	0	Median	0.80827	0.96692	11.814	2	0	Median	0.8873	0.89687	11.791	3	0	Median	0.85647	0.91741	10.319	2	0	Median	899820000	467970000	431850000	152550000	69149000	83401000	193750000	97707000	96042000	324340000	172010000	152330000	229180000	129100000	100080000	56182	3998	52903	341294;341295;341296;341297;341298;341299;341300;341301	460351;460352;460353;460354;460355;460356	460354			6	
VQALTTDISLIFAALK	1	Unmodified	1702.9869	0.9869227	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.47	6.98		7							8	4	3	5	3	100.69	95.512	2;3	4.3273E-139	49347	160513_QHF_FH_JSI12Kac_6	275.35	216.29			0.79177	0.87489	23.185	12	10	Median	1.4236	1.2238	30.086	4	3	Linear	0.72165	0.87489	6.8951	2	2	Median	1.0762	1.0348	16.397	3	3	Median	0.66686	0.70128	5.8967	3	2	Median	1776600000	950440000	826150000	481050000	233870000	247180000	417580000	241590000	175990000	491190000	242170000	249010000	386770000	232800000	153960000	56183	3132	52904	341302;341303;341304;341305;341306;341307;341308;341309;341310;341311;341312;341313;341314;341315;341316	460357;460358;460359;460360;460361;460362;460363;460364;460365;460366;460367;460368;460369;460370;460371;460372;460373	460370			17	
VQAMQISSEK	1	Oxidation (M)	1135.5543	0.55432356	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	1	0		By matching	By MS/MS		1.5	0.5	1	1									1	1		24.197	23.678	2	0.019483	20705	160511_QHF_FH_JSI11i_1	44.57	30.991			0.89277	0.9554	59.04	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1876	1.4504	NaN	1	0	Median	0.67112	0.62933	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	92509000	53310000	39199000	0	0	0	21192000	9588400	11603000	71317000	43721000	27596000	0	0	0	56184	5383	52905	341317;341318	460374	460374		2648	1	
VQAMQISSEK	1	Unmodified	1119.5594	0.55940893	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.2	0.4	4	1								1	3		1	24.688	23.802	2	8.6079E-05	20363	160511_QHF_FH_JSI9i_1	86.18	45.912			1.4217	1.3236	11.949	2	0	Median	1.4852	1.2164	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3608	1.4403	NaN	1	0	Median	427270000	184350000	242930000	221620000	87796000	133830000	0	0	0	0	0	0	205650000	96552000	109100000	56185	5383	52905	341319;341320;341321;341322;341323	460375;460376;460377;460378;460379;460380	460378			6	
VQAMQISSEKEEDDNEK	2	Unmodified	1978.879	0.87896475	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	24.813	24.119	3	9.916E-07	21375	160511_QHF_FH_JSI12i_1	119.4	93.445			0.68621	0.81551	54.376	5	2	Median	0.61324	0.50081	86.308	2	2	Median	0.68621	0.81551	NaN	1	0	Median	0.64994	0.62697	NaN	1	0	Median	1.0271	1.0772	NaN	1	0	Median	655900000	371830000	284060000	163000000	103880000	59118000	132900000	72434000	60466000	158270000	103520000	54759000	201730000	92005000	109720000	56186	5383	52906	341324;341325;341326;341327;341328	460381;460382;460383;460384;460385;460386;460387;460388	460384			8	
VQAMQISSEKEEDDNEK	2	Oxidation (M)	1994.8739	0.87387937	5383	Q9UKY7	CDV3	Protein CDV3 homolog	yes	yes	0	0	1	1				By MS/MS	1	0	1												1	24.7	24.173	3	0.014336	21426	160511_QHF_FH_JSI12i_1	41.202	31.832			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56187	5383	52906	341329	460389	460389		2648	1	
VQANLGAPDINIEGLDAK	1	Unmodified	1836.9581	0.95814177	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	78.319	77.845	2	3.0871E-13	70917	160511_QHF_FH_JSI12i_1	184.76	161.01			0.84973	0.88582	15.409	4	3	Median	0.86905	0.71314	NaN	1	1	Median	0.83084	0.9633	NaN	1	0	Median	0.82634	0.81457	NaN	1	1	Median	0.97512	0.99205	NaN	1	1	Median	440130000	230710000	209420000	80712000	42169000	38543000	163050000	87811000	75240000	114260000	61921000	52337000	82113000	38813000	43300000	56188	2286	52907	341330;341331;341332;341333	460390;460391;460392;460393;460394;460395	460391			6	
VQAQAEQGQQELK	1	Unmodified	1455.7318	0.73177065	4486	Q9BW19	KIFC1	Kinesin-like protein KIFC1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									2		1	1	16.735	16.188	2	4.921E-05	13409	160511_QHF_FH_JSI9i_1	77.744	61.854			1.2235	1.0497	7.969	3	1	Median	1.3076	1.0497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2235	1.2007	NaN	1	0	Median	0.96723	1.0423	NaN	1	0	Median	106640000	56218000	50426000	24702000	15657000	9045200	0	0	0	45131000	20748000	24382000	36812000	19813000	16999000	56189	4486	52908	341334;341335;341336;341337	460396;460397;460398;460399	460399			4	
VQAQGHTLQVAGLR	0	Unmodified	1476.8161	0.8161094	3479	Q8IZ83	ALDH16A1	Aldehyde dehydrogenase family 16 member A1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	6	2	2	2	37.51	35.067	2;3	1.8688E-05	28514	160511_QHF_FH_JSI9i_3	83.862	43.51			0.9968	0.95778	15.738	11	4	Median	1.3785	1.1118	15.504	5	2	Median	0.76254	0.92026	5.6519	2	0	Median	0.88076	0.88506	8.0739	2	0	Median	0.9157	0.91567	12.391	2	2	Median	665500000	318610000	346880000	351700000	148820000	202880000	116220000	68305000	47918000	41472000	25438000	16034000	156100000	76048000	80050000	56190	3479	52909	341338;341339;341340;341341;341342;341343;341344;341345;341346;341347;341348;341349	460400;460401;460402;460403;460404;460405;460406;460407;460408;460409;460410;460411	460405			12	
VQAQGPGLK	1	Unmodified	896.50797	0.50796571	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.2	4.94	3	4	1				2			1	2	3	4	16.31	14.458	2	0.00059897	12239	160511_QHF_FH_JSI10i_2	77.674	42.85			0.9595	0.97262	18.336	10	0	Median	0.97062	0.82318	NaN	1	0	Median	0.79196	0.95463	21.551	2	0	Median	0.99994	0.97513	1.2615	3	0	Median	0.90433	0.95447	26.989	4	0	Median	1243000000	677130000	565880000	95162000	50110000	45052000	373220000	201880000	171340000	374660000	194570000	180090000	399960000	230560000	169390000	56191	512	52910	341350;341351;341352;341353;341354;341355;341356;341357;341358;341359	460412;460413;460414;460415;460416;460417;460418;460419	460419			8	
VQAQLNTEQLLDDVVAK	1	Unmodified	1883	6.5850998E-06	4208	Q96QD9	FYTTD1	UAP56-interacting factor	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			90.992	90.932	2	1.4029E-10	82434	160511_QHF_FH_JSI10i_1	136.27	117.64			0.97291	1.0441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97291	1.0441	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9937700	6954100	2983600	0	0	0	9937700	6954100	2983600	0	0	0	0	0	0	56192	4208	52911	341360	460420	460420			1	
VQAQVIQETIVPK	1	Unmodified	1451.8348	0.83477916	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	6.04	8		1			3	3			2	3	5	5	61.915	57.487	2;3	4.6153E-10	50871	160511_QHF_FH_JSI9i_1	163.78	146.55			0.97393	0.9815	41.129	13	2	Median	1.336	1.09	21.286	2	0	Median	0.95666	1.1371	14.393	3	1	Plateau	1.1668	1.1194	27.051	4	1	Median	0.84916	0.9125	73.791	4	0	Median	1831000000	969770000	861200000	385190000	192850000	192330000	458050000	261980000	196070000	515240000	255560000	259690000	472500000	259390000	213110000	56193	2676	52912	341361;341362;341363;341364;341365;341366;341367;341368;341369;341370;341371;341372;341373;341374;341375	460421;460422;460423;460424;460425;460426;460427;460428;460429;460430;460431;460432;460433;460434;460435;460436;460437	460435			17	
VQASLAANTFTITGHAETK	1	Unmodified	1959.0062	0.0061545955	1172	P20290	BTF3	Transcription factor BTF3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.77	5.33	3	7	8						4	5	5	7	5	57.27	54.924	2;3	3.1282E-83	47053	160511_QHF_FH_JSI12i_3	265.46	248.93			1.0293	0.99256	56.83	21	7	Median	1.3057	1.062	10.529	5	2	Median	0.82292	1.0108	116.91	5	1	Median	1.0405	0.97199	14.089	6	3	Median	0.92327	0.99162	7.1322	5	1	Median	10807000000	5428700000	5378400000	1558800000	787520000	771250000	691300000	396220000	295080000	4884000000	2260900000	2623100000	3673100000	1984100000	1689000000	56194	1172	52913	341376;341377;341378;341379;341380;341381;341382;341383;341384;341385;341386;341387;341388;341389;341390;341391;341392;341393;341394;341395;341396;341397	460438;460439;460440;460441;460442;460443;460444;460445;460446;460447;460448;460449;460450;460451;460452;460453;460454;460455;460456;460457;460458;460459;460460;460461;460462;460463;460464;460465;460466;460467;460468;460469	460462			31	
VQAVNSQGK	1	Unmodified	929.49304	0.49304393	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	6.6627	3.3649	2	3.2093E-06	3947	160511_QHF_FH_JSI12i_1	123.72	95.208			0.99637	1.0453	18.463	7	0	Median	1.3053	1.0628	NaN	1	0	Median	0.83497	0.98059	9.0344	2	0	Median	0.92375	0.90957	10.747	2	0	Median	1.2689	1.3417	12.166	2	0	Median	1806400000	897070000	909340000	433680000	190190000	243490000	470120000	275590000	194530000	415850000	227800000	188050000	486770000	203490000	283280000	56195	1388	52914	341398;341399;341400;341401;341402;341403;341404	460470;460471;460472;460473;460474;460475;460476;460477;460478;460479;460480	460471			11	
VQAVVAVAR	0	Unmodified	911.55525	0.55525025	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		36.934	27.486	2	0.043353	16866	160513_QHF_FH_JSI11Kac_4	43.246	19.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56196	2162	52915	341405	460481	460481			1	
VQAWYMDDAPGDPR	0	Unmodified	1619.7038	0.70384134	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	57.163	56.511	2	0.00016458	51113	160511_QHF_FH_JSI11i_1	95.094	79.522			1.1511	1.1721	18.107	4	2	Median	1.134	0.92202	NaN	1	1	Median	1.1684	1.3481	NaN	1	1	Median	1.0818	1.0512	NaN	1	0	Median	1.2743	1.3069	NaN	1	0	Median	292460000	126110000	166350000	35314000	17666000	17648000	84846000	40256000	44590000	74263000	37526000	36738000	98037000	30666000	67371000	56197	4461	52916	341406;341407;341408;341409;341410;341411	460482;460483;460484;460485;460486;460487;460488;460489	460483			8	
VQCCLYFIAPSGHGLK	1	Unmodified	1848.9015	0.90149529	2725	Q16181	SEPT7	Septin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	69.987	64.097	3	6.867E-07	34037	160513_QHF_FH_JSI9Kac_6	86.378	76.039			0.98247	0.91353	27.161	6	0	Median	0.8536	0.73288	NaN	1	0	Median	0.78892	0.89984	NaN	1	0	Median	0.98247	0.91353	0.41115	2	0	Median	1.3892	1.4191	3.8315	2	0	Median	445820000	213160000	232650000	27246000	14490000	12756000	113360000	62140000	51218000	147840000	75425000	72418000	157370000	61108000	96263000	56198	2725	52917	341412;341413;341414;341415;341416;341417	460490;460491;460492;460493;460494;460495;460496;460497;460498	460493			9	
VQCPALIVHGEK	1	Unmodified	1349.7126	0.71255553	3354	Q86WA6	BPHL	Valacyclovir hydrolase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.085	33.975	3	0.0047614	28821	160511_QHF_FH_JSI12i_3	49.298	35.898			1.7696	1.8359	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7696	1.8359	NaN	1	1	Median	39913000	16356000	23558000	0	0	0	0	0	0	0	0	0	39913000	16356000	23558000	56199	3354	52918	341418	460499	460499			1	
VQDAFAAAK	1	Unmodified	919.47633	0.47633123	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		5.33	6.13	2						1				1	2		24.074	21.13	2	0.0021788	13360	160513_QHF_FH_JSI11Kac_4	80.165	47.325			0.70427	0.67661	17.262	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.57206	0.67886	NaN	1	1	Median	0.81038	0.78635	21.258	2	1	Median	NaN	NaN	NaN	0	0	Median	1085700000	651710000	433980000	0	0	0	472440000	304600000	167850000	613240000	347110000	266130000	0	0	0	56200	2172	52919	341419;341420;341421	460500;460501;460502;460503	460502			4	
VQDAFAAAKLLALALIILLGFVQIGK	2	Unmodified	2695.6404	0.64043044	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		14.3	2.36				1					2		2	1		107.92	101.08	3;4	1.3251E-22	60431	160513_QHF_FH_JSI10Kac_6	122.73	122.57			0.76586	0.82969	5.0906	3	1	Median	NaN	NaN	NaN	0	0	Median	0.73237	0.84123	7.1103	2	0	Median	0.82907	0.82969	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	195170000	111680000	83492000	0	0	0	193300000	110410000	82881000	1875800	1264900	610870	0	0	0	56201	2172	52920	341422;341423;341424	460504;460505;460506;460507;460508	460507			5	
VQDAVQQHQQK	1	Unmodified	1307.6582	0.65821178	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.01	2	9					3			2	4	5	3	5.8795	3.6855	2;3	4.8244E-13	3194	160511_QHF_FH_JSI11i_2	147.2	117.53			1.068	1.1348	22.348	13	3	Median	1.5251	1.295	19.397	2	0	Median	0.99979	1.1348	27.327	3	1	Median	1.0509	1.0347	21.329	5	1	Median	1.1326	1.2351	4.8803	3	1	Median	1313800000	670750000	643030000	226920000	104840000	122080000	249890000	118600000	131290000	498230000	268900000	229330000	338740000	178410000	160330000	56202	5035	52921	341425;341426;341427;341428;341429;341430;341431;341432;341433;341434;341435;341436;341437;341438	460509;460510;460511;460512;460513;460514;460515;460516;460517;460518;460519;460520;460521;460522	460519			14	
VQDDEVGDGTTSVTVLAAELLR	0	Unmodified	2287.1543	0.15433498	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	101.83	101.73	2;3	7.2216E-239	92455	160511_QHF_FH_JSI11i_1	421.87	400.11			1.0005	1.0066	8.5901	8	0	Median	1.3472	1.0902	1.8322	2	0	Median	0.77068	0.91277	2.2185	2	0	Median	0.97121	0.95337	7.1902	2	0	Median	1.0038	1.0551	6.1441	2	0	Median	5065300000	2606500000	2458800000	668280000	294530000	373750000	1726400000	963060000	763310000	1166700000	581820000	584840000	1504000000	767140000	736890000	56203	2090	52922	341439;341440;341441;341442;341443;341444;341445;341446	460523;460524;460525;460526;460527;460528	460524			6	
VQDGKPVILLFR	1	Unmodified	1383.8238	0.82382054	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.33		1	6						4	4	2	3	2	69.432	65.749	2;3	0.001225	35878	160513_QHF_FH_JSI10Kac_6	63.908	48.019			0.85489	0.84702	27.214	11	0	Median	1.0394	0.87631	42.439	4	0	Median	0.80502	0.97215	2.2435	2	0	Median	0.89093	0.83489	7.5254	3	0	Plateau	0.86025	0.92223	22.233	2	0	Median	731920000	387300000	344620000	210970000	103940000	107030000	236650000	138200000	98454000	203650000	102390000	101260000	80653000	42771000	37882000	56204	4956	52923	341447;341448;341449;341450;341451;341452;341453;341454;341455;341456;341457	460529;460530;460531;460532;460533;460534;460535;460536;460537;460538;460539;460540;460541;460542;460543	460543			15	
VQDHLNSLR	0	Unmodified	1080.5676	0.56760585	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	15.387	15.45	3	0.032861	12224	160511_QHF_FH_JSI12i_3	26.786	18.254			1.2783	1.2876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2783	1.2876	NaN	1	1	Median	83262000	34532000	48730000	0	0	0	0	0	0	0	0	0	83262000	34532000	48730000	56205	3003	52924	341458	460544	460544			1	
VQDIKEVK	2	Acetyl (K)	999.56006	0.56006086	5291	Q9UHA3	RSL24D1	Probable ribosome biogenesis protein RLP24	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		34.11	25.274	2	0.048031	15059	160513_QHF_FH_JSI11Kac_3	56.011	11.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1291500	1291500	0	0	0	0	0	0	0	1291500	1291500	0	0	0	0	56206	5291	52925	341459	460545	460545			1	
VQDLLEFLHEK	1	Unmodified	1369.7242	0.72416608	591	O75962	TRIO	Triple functional domain protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	79.708	78.939	3	0.0014091	69301	160511_QHF_FH_JSI11i_2	56.122	41.246			0.57643	0.54797	49.273	6	6	Median	0.82616	0.74311	36.251	2	2	Median	0.72514	0.85772	90.003	2	2	Median	0.53262	0.52213	NaN	1	1	Median	0.47618	0.51198	NaN	1	1	Median	41744000	22572000	19172000	9211400	3829800	5381600	13321000	5532300	7788400	11313000	6999300	4313200	7899000	6210100	1688900	56207	591	52926	341460;341461;341462;341463;341464;341465;341466;341467	460546;460547;460548;460549;460550;460551;460552;460553	460551			8	
VQDQMTK	1	Unmodified	848.4062	0.40620276	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	7.2924	6.9402	2	0.023579	4921	160511_QHF_FH_JSI12i_1	58.604	30.076			0.63029	0.64625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.63029	0.64625	NaN	1	1	Median	97324000	51443000	45881000	0	0	0	0	0	0	0	0	0	97324000	51443000	45881000	56208	3258	52927	341468	460554	460554			1	
VQDTSNTGLGEDIIHQLSK	1	Unmodified	2054.028	0.02801225	3415	Q8IWA0	WDR75	WD repeat-containing protein 75	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.037	72.087	3	0.00043789	63140	160511_QHF_FH_JSI11i_2	58.997	50.055			0.278	0.29875	51.566	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20572	0.20747	NaN	1	1	Median	0.37568	0.4302	NaN	1	1	Median	92498000	68725000	23773000	0	0	0	0	0	0	57016000	41933000	15082000	35482000	26791000	8690700	56209	3415	52928	341469;341470	460555;460556	460556			2	
VQDVFSSTHSLLHYFDR	0	Unmodified	2049.9908	0.99083888	5352	Q9UJX4	ANAPC5	Anaphase-promoting complex subunit 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	7.33	6.13			2						1		1	1	1	84.56	82.645	4	0.00040588	41921	160513_QHF_FH_JSI10Kac_6	61.684	51.626			0.88423	0.97749	2.3169	3	0	Median	NaN	NaN	NaN	0	0	Median	0.84703	0.97749	NaN	1	0	Median	1.1032	0.99148	NaN	1	0	Median	0.88423	0.94756	NaN	1	0	Median	103490000	49031000	54455000	0	0	0	57309000	27792000	29518000	34116000	12990000	21126000	12061000	8249100	3811800	56210	5352	52929	341471;341472;341473	460557;460558;460559	460559			2	
VQEAIIHFR	0	Unmodified	1111.6138	0.61382777	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.12	4.51		4	3						1	1	1	3	3	42.249	40.501	2;3	0.002898	34368	160511_QHF_FH_JSI12i_3	46.334	42.495			1.0578	1.0373	11.565	8	4	Median	1.21	1.0386	NaN	1	0	Median	0.77024	0.92746	NaN	1	0	Median	1.0671	1.0166	9.4786	3	2	Plateau	1.1757	1.1856	10.071	3	2	Median	558830000	287280000	271550000	41344000	19133000	22211000	73929000	41679000	32250000	208940000	109000000	99940000	234620000	117470000	117150000	56211	5351	52930	341474;341475;341476;341477;341478;341479;341480;341481	460560;460561;460562;460563;460564;460565	460564			5	
VQEAINSLGGSVFPK	1	Unmodified	1544.8199	0.81985737	566	O75794	CDC123	Cell division cycle protein 123 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	66.707	65.643	2	1.2725E-34	57362	160511_QHF_FH_JSI11i_2	158.58	98.668			0.98454	1.1347	36.708	2	2	Median	NaN	NaN	NaN	0	0	Median	0.71705	0.8753	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3518	1.471	NaN	1	1	Median	64791000	26073000	38718000	0	0	0	27119000	12510000	14609000	0	0	0	37672000	13563000	24109000	56212	566	52931	341482;341483;341484;341485;341486;341487;341488;341489	460566;460567;460568;460569;460570;460571;460572;460573	460572			8	
VQEAPIDEHWIIECNDGVFQR	0	Unmodified	2554.1911	0.19107161	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.792	80.679	3	1.5475E-05	72101	160511_QHF_FH_JSI11i_3	57.293	53.131			1.0356	1.0334	28.631	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88096	0.84402	NaN	1	0	Median	1.2174	1.2653	NaN	1	1	Median	70747000	38232000	32516000	0	0	0	0	0	0	30115000	18047000	12068000	40632000	20184000	20447000	56213	2532	52932	341490;341491	460574;460575	460574			2	
VQEETTLVDDPFQMK	1	Unmodified	1778.8397	0.83966612	5146	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	72.552	72.178	2	1.0069E-06	65433	160511_QHF_FH_JSI10i_1	130.1	115.68			1.3732	1.4329	10.214	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.4182	1.6803	NaN	1	1	Median	1.5177	1.4329	NaN	1	1	Median	1.3501	1.389	NaN	1	1	Median	192270000	74305000	117960000	0	0	0	55743000	26631000	29111000	64827000	19905000	44922000	71700000	27769000	43931000	56214	5146	52933	341492;341493;341494	460576;460577;460578	460578			3	
VQEFDSGLLHWR	0	Unmodified	1485.7365	0.7364621	167	O14497	ARID1A	AT-rich interactive domain-containing protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	68.957	68.589	3	0.0010659	61012	160511_QHF_FH_JSI11i_3	45.115	23.302			1.3134	1.2543	23.735	3	1	Median	NaN	NaN	NaN	0	0	Median	1.4426	1.7844	NaN	1	1	Median	1.3134	1.2543	NaN	1	0	Median	1.0409	1.136	NaN	1	0	Median	162270000	78887000	83383000	0	0	0	9886400	3946100	5940300	81445000	29888000	51556000	70938000	45052000	25886000	56215	167	52934	341495;341496;341497	460579;460580;460581;460582	460580			4	
VQEFEHVNGR	0	Unmodified	1213.584	0.5839842	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.972	15.058	3	0.015073	12169	160511_QHF_FH_JSI12i_2	32.329	19.144			0.80141	0.90756	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80141	0.90756	NaN	1	1	Median	50782000	21657000	29125000	0	0	0	0	0	0	0	0	0	50782000	21657000	29125000	56216	2578	52935	341498	460583	460583			1	
VQEGETIEDGAR	0	Unmodified	1302.6052	0.60517315	1458	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.015	17.408	2	0.0080282	14936	160511_QHF_FH_JSI12i_1	50.452	4.4552			0.6211	0.71857	4.138	3	0	Plateau	0.8994	0.73199	NaN	1	0	Median	0.6211	0.71857	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63506	0.67631	NaN	1	0	Median	110420000	68228000	42193000	35377000	19918000	15459000	38786000	25361000	13425000	0	0	0	36258000	22950000	13309000	56217	1458	52936	341499;341500;341501	460584;460585	460584			2	
VQEGETIEDGARR	0	Unmodified	1458.7063	0.70628418	1458	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	14.34	13.99	3	0.00027333	11534	160511_QHF_FH_JSI10i_2	53.252	34.194			1.007	1.0065	11.353	9	0	Median	1.1405	0.96303	NaN	1	0	Median	0.78358	0.94235	2.3073	2	0	Median	1.1271	1.0331	11.604	3	0	Plateau	0.99175	1.0065	11.965	3	0	Plateau	503390000	259600000	243790000	72002000	38755000	33247000	145700000	81520000	64177000	168090000	80392000	87696000	117600000	58935000	58666000	56218	1458	52937	341502;341503;341504;341505;341506;341507;341508;341509;341510	460586;460587;460588;460589;460590;460591;460592;460593;460594	460592			9	
VQEHEDSGDSEVENEAK	1	Unmodified	1900.7923	0.79225823	5659	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.506	12.376	3	0.0016863	9975	160511_QHF_FH_JSI11i_1	54.764	43.72			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7713200	7713200	0	0	0	0	0	0	0	7713200	7713200	0	0	0	0	56219	5659	52938	341511	460595	460595			1	
VQEIPQK	1	Unmodified	840.47052	0.47051757	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	13.314	13.043	2	0.030864	10472	160511_QHF_FH_JSI11i_1	53.754	27.86			0.71525	0.72896	10.214	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80789	0.78355	NaN	1	1	Median	0.63323	0.67817	NaN	1	1	Median	555590000	345780000	209810000	0	0	0	0	0	0	288510000	175350000	113160000	267080000	170430000	96645000	56220	427	52939	341512;341513	460596;460597	460596			2	
VQEIQVVK	1	Unmodified	941.55458	0.55458155	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		28.797	28.578	2	0.018359	25303	160511_QHF_FH_JSI11i_1	47.749	27.467			1.4728	1.4289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4728	1.4289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	164000000	75506000	88494000	0	0	0	0	0	0	164000000	75506000	88494000	0	0	0	56221	1656	52940	341514	460598	460598			1	
VQEKQHPVPPPAQNQNQVR	1	Acetyl (K)	2235.1509	0.15086177	2723	Q15942	ZYX	Zyxin	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		32.63	23.445	3	0.012264	14776	160513_QHF_FH_JSI11Kac_4	39.657	24.888			0.2803	0.27663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2803	0.27663	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4386200	3176000	1210200	0	0	0	0	0	0	4386200	3176000	1210200	0	0	0	56222	2723	52941	341515	460599	460599	2649		1	
VQELPLAR	0	Unmodified	924.53927	0.53926584	2483	Q13952	NFYC	Nuclear transcription factor Y subunit gamma	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.286	35.852	2	0.018223	30578	160511_QHF_FH_JSI11i_2	46.016	11.192			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56223	2483	52942	341516	460600	460600			1	
VQELQNLLK	1	Unmodified	1083.6288	0.62880913	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		56.742	56.336	2	0.002734	50980	160511_QHF_FH_JSI11i_1	63.397	32.805			1.2899	1.3683	9.5812	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2598	1.4642	NaN	1	0	Median	1.3207	1.2786	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	192190000	89998000	102190000	0	0	0	115240000	55767000	59471000	76949000	34231000	42718000	0	0	0	56224	3328	52943	341517;341518	460601;460602	460601			2	
VQEMNYIQK	1	Unmodified	1151.5645	0.56449431	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		30.489	30.26	2	0.0026842	27036	160511_QHF_FH_JSI11i_1	63.486	34.399			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56225	418	52944	341519	460603	460603			1	
VQEMVESNEAK	1	Unmodified	1262.5813	0.58126659	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.338	15.865	2	0.00016428	13292	160511_QHF_FH_JSI10i_1	92.866	75.626			0.95483	0.71706	24.91	4	4	Linear	0.93406	0.75879	NaN	1	1	Median	0.68569	0.79406	NaN	1	1	Median	0.97606	0.96578	NaN	1	1	Median	1.2279	1.3121	NaN	1	1	Median	544190000	245820000	298360000	173830000	78698000	95130000	152710000	67243000	85468000	111270000	50346000	60928000	106370000	49534000	56839000	56226	2591	52945	341520;341521;341522;341523	460604;460605;460606;460607	460606			4	
VQENCIDLVGR	0	Unmodified	1301.6398	0.63978452	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	42.428	41.8	2	0.024391	38023	160511_QHF_FH_JSI12i_1	40.994	8.4706			1.4845	1.5098	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4845	1.5098	NaN	1	0	Median	82678000	38209000	44469000	0	0	0	0	0	0	0	0	0	82678000	38209000	44469000	56227	542	52946	341524	460608	460608			1	
VQENDGKEPPPVVNYEEDAR	1	Unmodified	2284.0608	0.060768941	1102	P16591	FER	Tyrosine-protein kinase Fer	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	39.902	39.29	3	0.040367	35655	160511_QHF_FH_JSI12i_1	30.094	23.787			0.82693	0.85103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82693	0.85103	NaN	1	1	Median	24109000	7957500	16152000	0	0	0	0	0	0	0	0	0	24109000	7957500	16152000	56228	1102	52947	341525	460609	460609			1	
VQENLANQR	0	Unmodified	1070.5469	0.54687041	5788				yes	yes	0	0	0	0	By MS/MS				3	0			1							1				9.1553	8.5636	2	0.0080406	6246	160511_QHF_FH_JSI9i_3	52.716	1.3703	+		1.313	1.0834	NaN	1	0	Median	1.313	1.0834	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32407000	13797000	18611000	32407000	13797000	18611000	0	0	0	0	0	0	0	0	0	56229	5788	52948	341526	460610	460610			1	
VQENSAYICSR	0	Unmodified	1325.6034	0.60339901	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	21.052	20.751	2	0.00032487	17830	160511_QHF_FH_JSI11i_1	75.294	70.843			1.063	1.1324	13.396	3	0	Median	NaN	NaN	NaN	0	0	Median	1.063	1.2246	NaN	1	0	Median	0.95947	0.94325	NaN	1	0	Median	1.0827	1.1324	NaN	1	0	Median	136830000	74147000	62679000	0	0	0	29387000	16362000	13026000	44436000	25817000	18619000	63003000	31969000	31034000	56230	5603	52949	341527;341528;341529	460611;460612	460611			2	
VQENSPGHR	0	Unmodified	1022.4894	0.48935553	4793	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	5.58		4	4					3		1	2	4	4	4.5194	1.5832	2;3	1.4972E-05	2189	160511_QHF_FH_JSI11i_3	96.143	65.531			1.1985	1.1681	17.013	9	0	Median	NaN	NaN	NaN	0	0	Median	1.3599	1.5708	NaN	1	0	Median	1.2589	1.2286	16.428	4	0	Median	1.0431	1.0915	15.187	4	0	Median	1289000000	516100000	772940000	224770000	0	224770000	1894100	914960	979180	870000000	419180000	450810000	192380000	95998000	96379000	56231	4793	52950	341530;341531;341532;341533;341534;341535;341536;341537;341538;341539;341540	460613;460614;460615;460616;460617;460618;460619;460620;460621;460622	460616			10	
VQEQELK	1	Unmodified	872.46035	0.46034682	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0			By MS/MS	By MS/MS	13	0						2						1	1	14.016	6.8346	2	0.02255	6019	160513_QHF_FH_JSI11Kac_3	67.981	12.305			1.172	1.1963	18.98	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3859	1.3682	NaN	1	0	Median	0.99114	1.0461	NaN	1	0	Median	25465000	12449000	13016000	0	0	0	0	0	0	15269000	7078500	8190300	10196000	5370400	4826000	56232	2780	52951	341541;341542	460623;460624;460625	460623			3	
VQEQELTR	0	Unmodified	1001.5142	0.5141733	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.315	12.892	2	0.0066274	10624	160511_QHF_FH_JSI12i_1	61.999	30.065			0.93149	0.89084	11.222	4	2	Median	0.93252	0.7773	NaN	1	1	Median	0.73171	0.87135	NaN	1	0	Median	0.93047	0.91077	NaN	1	1	Median	0.96934	1.0196	NaN	1	0	Median	1013800000	489830000	524000000	212170000	102490000	109680000	226770000	103120000	123650000	255380000	101780000	153610000	319500000	182440000	137060000	56233	1085	52952	341543;341544;341545;341546	460626;460627;460628	460627			3	
VQEQLGNDVVEK	1	Unmodified	1356.6885	0.68850885	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	35.633	31.479	2	2.6911E-07	28235	160511_QHF_FH_JSI12i_1	129.82	107.83			0.8929	0.89341	12.951	7	0	Median	0.945	0.77598	NaN	1	0	Median	0.92398	1.0893	5.0448	2	0	Median	0.87778	0.85861	2.7384	2	0	Median	0.85516	0.92153	4.3818	2	0	Median	1839100000	935920000	903180000	458820000	217880000	240940000	471420000	230550000	240870000	467960000	257760000	210200000	440900000	229730000	211160000	56234	275	52953	341547;341548;341549;341550;341551;341552;341553	460629;460630;460631;460632;460633;460634;460635;460636;460637;460638;460639	460632			11	
VQEQVHTLLSQDQAQAAR	0	Unmodified	2021.029	0.029015303	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.576	1	8	4							2	2	5	4	38.144	37.51	2;3	1.5906E-52	32818	160511_QHF_FH_JSI10i_2	167.92	153.31			1.1446	1.099	9.165	13	0	Median	1.2595	1.0679	2.5145	2	0	Median	0.84063	1.0237	6.6518	2	0	Median	1.1446	1.1099	10.6	5	0	Median	1.17	1.1929	6.4445	4	0	Linear	5292900000	2510300000	2782600000	690740000	296970000	393770000	988870000	561620000	427250000	1917000000	852080000	1065000000	1696200000	799590000	896640000	56235	2252	52954	341554;341555;341556;341557;341558;341559;341560;341561;341562;341563;341564;341565;341566	460640;460641;460642;460643;460644;460645;460646;460647;460648;460649;460650;460651;460652;460653;460654;460655;460656;460657;460658;460659;460660;460661;460662;460663	460656			23	
VQEQVMMTVK	1	Oxidation (M)	1207.5941	0.59407988	2473	Q13835	PKP1	Plakophilin-1	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			24.006	23.722	2	0.0036905	20918	160511_QHF_FH_JSI10i_1	59.8	9.193			0.54741	0.6484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54741	0.6484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	484710000	289720000	194990000	0	0	0	484710000	289720000	194990000	0	0	0	0	0	0	56236	2473	52955	341567	460664;460665	460665		1963;1964	2	
VQESADELQK	1	Unmodified	1145.5564	0.55643205	2126	P84085	ARF5	ADP-ribosylation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	17.993	16.198	2	2.3056E-05	13499	160511_QHF_FH_JSI9i_1	98.044	55.445			0.84108	0.90557	6.9341	5	0	Median	1.1293	0.92062	NaN	1	0	Median	0.68018	0.79107	NaN	1	0	Median	0.97937	0.94682	NaN	1	0	Median	0.83927	0.89278	2.0117	2	0	Median	1209300000	642610000	566660000	274430000	130530000	143900000	307310000	166340000	140970000	302610000	167480000	135130000	324930000	178260000	146660000	56237	2126	52956	341568;341569;341570;341571;341572	460666;460667;460668;460669;460670;460671;460672;460673;460674;460675	460673			10	
VQETGDIVISNAYVDLAPTSGTSAK	1	Unmodified	2535.2704	0.27042737	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	81.033	80.779	2	5.516E-28	73307	160511_QHF_FH_JSI10i_1	142.78	121.32			0.99251	1.039	34.031	2	2	Median	NaN	NaN	NaN	0	0	Median	0.72235	0.81682	NaN	1	1	Median	1.3637	1.3217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32004000	13765000	18240000	0	0	0	13488000	9160400	4327700	18516000	4604200	13912000	0	0	0	56238	1747	52957	341573;341574;341575;341576	460676;460677;460678;460679	460679			4	
VQEVLLK	1	Unmodified	827.51165	0.5116541	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	3	2	32.659	31.895	2	0.015056	28571	160511_QHF_FH_JSI11i_1	65.252	15.894			1.0221	0.98823	16.17	8	0	Median	1.0433	0.87839	9.4357	2	0	Median	0.82954	0.99399	13.401	2	0	Median	1.1232	1.1224	10.773	2	0	Median	0.84875	0.90502	26.739	2	0	Median	1349900000	657410000	692460000	255390000	118490000	136910000	380880000	195060000	185810000	402580000	182030000	220550000	311030000	161830000	149200000	56239	5633	52958	341577;341578;341579;341580;341581;341582;341583;341584;341585	460680;460681;460682;460683;460684;460685;460686;460687;460688	460680			9	
VQEVPKLK	2	Acetyl (K)	981.58588	0.58588168	2250	Q07020	RPL18	60S ribosomal protein L18	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		43.647	34.49	2	0.042397	18635	160513_QHF_FH_JSI10Kac_3	50.607	33.221			0.60978	0.65228	145.13	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5542	1.8202	NaN	1	0	Median	0.23924	0.23375	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16843000	11348000	5494900	0	0	0	5386600	2124900	3261700	11456000	9223000	2233200	0	0	0	56240	2250	52959	341586;341587	460689	460689			1	
VQEVQVVGVK	1	Unmodified	1083.6288	0.62880913	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	35.641	34.953	2	0.034368	30734	160511_QHF_FH_JSI9i_1	46.457	21.938			0.75156	0.63901	50.429	3	1	Median	0.75156	0.63901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0882	1.0737	NaN	1	0	Median	0.37433	0.39169	NaN	1	0	Median	200160000	122250000	77911000	29020000	17006000	12014000	0	0	0	92320000	52631000	39689000	78825000	52618000	26207000	56241	4007	52960	341588;341589;341590	460690;460691	460691			2	
VQEYCYDNIHFMK	1	Unmodified	1745.7542	0.75416235	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	56.341	55.394	3	0.00015	47820	160511_QHF_FH_JSI11i_2	57.804	53.702			0.89344	0.99559	22.589	4	0	Median	0.84365	0.71963	NaN	1	0	Median	0.91595	1.1296	NaN	1	0	Median	0.87148	0.87751	NaN	1	0	Median	1.0399	1.1596	NaN	1	0	Median	281350000	150620000	130740000	37649000	21853000	15795000	61641000	34524000	27117000	83587000	35669000	47918000	98477000	58569000	39908000	56242	5722	52961	341591;341592;341593;341594	460692;460693;460694;460695;460696;460697;460698	460695			7	
VQEYGELDAK	1	Unmodified	1150.5506	0.55061839	5051	Q9NVU7	SDAD1	Protein SDA1 homolog	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			26.245	25.942	2	0.00089333	22878	160511_QHF_FH_JSI10i_1	81.972	43.009			0.91313	1.0869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91313	1.0869	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63634000	34226000	29408000	0	0	0	63634000	34226000	29408000	0	0	0	0	0	0	56243	5051	52962	341595	460699	460699			1	
VQFAMHPNPNEK	1	Unmodified	1410.6714	0.671419	5809				yes	yes	0	0	0	0				By MS/MS	2	0		1											1	10.411	9.7203	3	0.030035	7381	160511_QHF_FH_JSI12i_2	20.463	2.3669	+		0.74424	0.82243	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74424	0.82243	NaN	1	0	Median	33775000	16949000	16826000	0	0	0	0	0	0	0	0	0	33775000	16949000	16826000	56244	5809	52963	341596	460700	460700			1	
VQFCPFEKNVESTR	1	Acetyl (K)	1781.8407	0.84066917	4051	Q96EL3	MRPL53	39S ribosomal protein L53, mitochondrial	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		75.193	64.496	2	0.020844	34382	160513_QHF_FH_JSI11Kac_5	58.676	24.791			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2591500	2591500	0	0	0	0	0	0	0	2591500	2591500	0	0	0	0	56245	4051	52964	341597	460701	460701	3039		1	
VQFGVMTR	0	Unmodified	936.48512	0.48512178	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	41.984	41.402	2	0.018251	34620	160511_QHF_FH_JSI10i_3	47.849	17.13			0.73119	0.72951	13.46	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75628	0.91615	NaN	1	0	Median	0.78643	0.72951	NaN	1	0	Median	0.71687	0.72204	NaN	1	0	Median	238650000	146410000	92244000	0	0	0	83675000	51956000	31719000	68447000	37387000	31060000	86532000	57067000	29465000	56246	225	52965	341598;341599;341600	460702;460703	460702			2	
VQFMYGEDPSNAMPVIFGK	1	Unmodified	2128.9962	0.99618354	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				100.48	100.4	3	0.010175	88173	160511_QHF_FH_JSI9i_2	36.637	26.98			1.828	1.5313	NaN	1	1	Median	1.828	1.5313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7987900	2512600	5475300	7987900	2512600	5475300	0	0	0	0	0	0	0	0	0	56247	4181	52966	341601	460704	460704			1	
VQFQGKK	2	Unmodified	833.47594	0.4759373	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	2	3	7.7668	7.5455	2;3	0.0070191	5243	160511_QHF_FH_JSI9i_3	52.683	36.529			1.1232	1.0566	56.585	9	4	Median	1.4097	1.123	104.9	2	2	Median	1.2907	1.4894	4.3244	2	0	Median	1.0902	1.0107	4.6805	2	0	Median	1.0274	1.0566	80.462	3	2	Median	3806500000	2062700000	1743800000	870240000	434110000	436130000	758030000	455270000	302750000	562310000	276880000	285430000	1616000000	896450000	719520000	56248	840	52967	341602;341603;341604;341605;341606;341607;341608;341609;341610	460705;460706;460707;460708;460709;460710;460711;460712;460713;460714	460710			10	
VQFVPFHSDLGYR	0	Unmodified	1563.7834	0.78341229	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	1	2	67.191	66.672	2;3	3.0113E-05	57659	160511_QHF_FH_JSI12i_3	71.976	67.262			0.916	1.0091	13.128	4	1	Median	NaN	NaN	NaN	0	0	Median	0.92611	1.087	NaN	1	0	Median	0.86106	0.81083	NaN	1	0	Median	0.96749	1.0091	5.9497	2	1	Median	451640000	233660000	217980000	0	0	0	43739000	20901000	22838000	199110000	116630000	82476000	208800000	96130000	112670000	56249	3509	52968	341611;341612;341613;341614	460715;460716;460717;460718;460719;460720;460721	460720			7	
VQFWDSATGTLVK	1	Unmodified	1450.7456	0.7456298	3954	Q969X6	CIRH1A	Cirhin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	74.613	73.352	2	0.014884	63395	160511_QHF_FH_JSI12i_2	43.297	26.459			0.8306	0.93224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8306	0.93224	NaN	1	0	Median	15384000	6932200	8451300	0	0	0	0	0	0	0	0	0	15384000	6932200	8451300	56250	3954	52969	341615	460722	460722			1	
VQGDYFETLLYK	1	Unmodified	1474.7344	0.73439641	3013	Q658Y4	FAM91A1	Protein FAM91A1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1.5	0.5	1	1								1		1		84.503	84.036	2	0.032646	73918	160511_QHF_FH_JSI9i_2	39.622	19.632			0.62187	0.57357	26.047	2	0	Median	0.78404	0.68957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49324	0.47709	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35913000	21154000	14759000	16939000	7930600	9008000	0	0	0	18975000	13223000	5751400	0	0	0	56251	3013	52970	341616;341617	460723	460723			1	
VQGETQPQR	0	Unmodified	1041.5203	0.52032131	2557	Q14676	MDC1	Mediator of DNA damage checkpoint protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.8115	5.4654	2	0.035674	3487	160511_QHF_FH_JSI12i_1	47.082	28.351			1.7983	1.8711	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7983	1.8711	NaN	1	1	Median	74999000	20482000	54517000	0	0	0	0	0	0	0	0	0	74999000	20482000	54517000	56252	2557	52971	341618	460724	460724			1	
VQGGALEDSQLVAGVAFK	1	Unmodified	1787.9418	0.94176342	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.64	6	5	1							3	3	2	4	78.032	77.385	2;3	1.5143E-22	70309	160511_QHF_FH_JSI10i_1	171.21	148.33			0.85329	1.5399	36.724	11	6	Linear	0.9291	0.77326	4.7876	2	1	Median	0.75576	0.89786	41.724	3	2	Median	0.85236	0.84383	14.224	2	1	Median	0.76169	0.80576	53.767	4	2	Median	974700000	505360000	469350000	96803000	50834000	45969000	345100000	182550000	162550000	161370000	80789000	80578000	371430000	191180000	180250000	56253	4321	52972	341619;341620;341621;341622;341623;341624;341625;341626;341627;341628;341629;341630	460725;460726;460727;460728;460729;460730;460731;460732;460733;460734;460735;460736;460737;460738;460739;460740	460733			16	
VQGGALEDSQLVAGVAFKK	2	Unmodified	1916.0367	0.036726442	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.289	68.991	3	4.3201E-06	59749	160511_QHF_FH_JSI12i_3	72.772	66.044			1.084	1.1373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.084	1.1373	NaN	1	0	Median	59179000	29740000	29438000	0	0	0	0	0	0	0	0	0	59179000	29740000	29438000	56254	4321	52973	341631	460741	460741			1	
VQGLEQAVDNFEGK	1	Unmodified	1532.7471	0.74708636	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	1	2	65.166	64.386	2	1.0365E-29	58529	160511_QHF_FH_JSI10i_1	186.17	149.74			0.43544	0.5057	30.556	4	3	Median	NaN	NaN	NaN	0	0	Median	0.53885	0.64448	15.526	2	1	Median	NaN	NaN	NaN	0	0	Median	0.37425	0.39775	15.187	2	2	Median	426330000	281030000	145300000	0	0	0	172690000	103390000	69298000	0	0	0	253640000	177640000	76001000	56255	732	52974	341632;341633;341634;341635;341636	460742;460743;460744;460745;460746;460747	460746			6	
VQGLLVPMK	1	Unmodified	983.58377	0.58377319	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.635	56.29	2	0.036116	48234	160511_QHF_FH_JSI12i_2	46.994	18.887			1.3196	1.4424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3196	1.4424	NaN	1	1	Median	61637000	30069000	31568000	0	0	0	0	0	0	0	0	0	61637000	30069000	31568000	56256	1443	52975	341637	460748	460748			1	
VQGLVISQMLRK	1	Oxidation (M)	1386.8017	0.80170489	5329	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	yes	yes	0	0	1	1	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	96.893	87.588	2	0.028685	49862	160513_QHF_FH_JSI11Kac_6	44.309	33.48			0.98097	0.93297	15.62	3	0	Plateau	1.0525	0.91491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98097	0.93297	NaN	1	0	Median	1.1405	1.2103	NaN	1	0	Median	870040000	431740000	438300000	253870000	125810000	128060000	0	0	0	440640000	222590000	218050000	175530000	83339000	92193000	56257	5329	52976	341638;341639;341640	460749	460749			0	
VQGSDSDEEVVVATTR	0	Unmodified	1690.801	0.80097243	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.82	7				1	4				1	5	4	2	40.289	34.962	2;3	2.1282E-31	31640	160511_QHF_FH_JSI12i_1	197.14	163.26			0.93626	1.0046	7.3718	9	0	Median	1.2404	1.0048	NaN	1	0	Median	0.89598	1.0589	6.4655	4	0	Median	1.0326	0.99851	2.9486	3	0	Plateau	0.80903	0.8672	NaN	1	0	Median	1856800000	965750000	891060000	411900000	175530000	236370000	510700000	297710000	212980000	559840000	292570000	267270000	374370000	199940000	174430000	56258	1283	52977	341641;341642;341643;341644;341645;341646;341647;341648;341649;341650;341651;341652	460750;460751;460752;460753;460754;460755;460756;460757;460758;460759;460760;460761;460762;460763	460754			14	
VQGYFASFAK	1	Unmodified	1116.5604	0.56039521	3009	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		54.066	54.066	2	0.056946	47950	160511_QHF_FH_JSI11i_3	41.724	26.573			0.074259	0.068309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.074259	0.068309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	743250000	693940000	49303000	0	0	0	0	0	0	743250000	693940000	49303000	0	0	0	56259	3009	52978	341653	460764	460764			1	
VQHALLTSKASFK	2	Acetyl (K)	1470.8195	0.81946344	5853				yes	yes	1	0	0	1	By MS/MS				16	0									1	1				103.05	93.845	2	0.021165	54320	160513_QHF_FH_JSI9Kac_6	58.37	31.697	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41920000	41920000	0	41920000	41920000	0	0	0	0	0	0	0	0	0	0	56260	5853	52979	341654	460765	460765	3581		1	
VQHLWFQSIFDMLEHFR	0	Unmodified	2232.0939	0.093864166	4950	Q9NRF2	SH2B1	SH2B adapter protein 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.952	92.231	4	1.2451E-24	53824	160513_QHF_FH_JSI10Kac_6	157.74	144.04			0.90785	1.0703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90785	1.0703	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119470000	61062000	58407000	0	0	0	119470000	61062000	58407000	0	0	0	0	0	0	56261	4950	52980	341655	460766	460766			1	
VQHQDALQISDVVMASLLR	0	Unmodified	2122.1205	0.12047285	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	2	2	2	3	97.044	93.309	3	3.6229E-08	87970	160511_QHF_FH_JSI12i_3	102.98	85.489			0.92589	0.92204	8.0268	9	0	Median	1.0526	0.89195	15.988	2	0	Median	0.75788	0.91501	1.5418	2	0	Median	0.97739	0.91796	0.62815	2	0	Median	0.91645	0.93259	9.2621	3	0	Median	4395600000	2326400000	2069200000	673600000	327390000	346210000	591070000	361540000	229530000	1007300000	500980000	506290000	2123700000	1136500000	987160000	56262	2585	52981	341656;341657;341658;341659;341660;341661;341662;341663;341664	460767;460768;460769;460770;460771;460772	460770			2	
VQHQDALQISDVVMASLLR	0	Oxidation (M)	2138.1154	0.11538747	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	87.301	87.169	3	0.00021803	75303	160511_QHF_FH_JSI12i_3	63.857	47.364			1.3213	1.3551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3213	1.3551	NaN	1	1	Median	37027000	20115000	16912000	0	0	0	0	0	0	0	0	0	37027000	20115000	16912000	56263	2585	52981	341665	460773	460773		2033	1	
VQHQTSSTSPLSSPNQTSSEPRPLPAPR	0	Unmodified	2985.4904	0.49042475	3367	Q86X10	RALGAPB	Ral GTPase-activating protein subunit beta	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				37.966	36.494	4	0.0071659	29733	160511_QHF_FH_JSI9i_3	27.638	20.763			1.4872	1.2033	NaN	1	0	Median	1.4872	1.2033	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44192000	19317000	24876000	44192000	19317000	24876000	0	0	0	0	0	0	0	0	0	56264	3367	52982	341666	460774;460775	460775			2	
VQHVIHYQVPR	0	Unmodified	1374.7521	0.75205258	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	0	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			30.173	25.294	3	0.012986	20420	160511_QHF_FH_JSI9i_3	34.695	18.939			1.0866	1.0695	13.125	2	1	Median	1.2035	0.97469	NaN	1	0	Median	0.98105	1.1735	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28586000	12483000	16103000	25555000	11070000	14485000	3031000	1413300	1617700	0	0	0	0	0	0	56265	4603	52983	341667;341668	460776;460777	460776			2	
VQIAANEETQEREEQMK	1	Unmodified	2031.9531	0.95313275	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	2	3	29.856	29.245	3	7.1232E-16	24743	160511_QHF_FH_JSI11i_2	157.03	145.77			0.95322	0.91683	21.093	7	0	Median	0.95322	0.82777	NaN	1	0	Median	0.67854	0.82836	NaN	1	0	Median	0.96	0.93646	13.643	2	0	Median	0.82207	0.91683	24.473	3	0	Plateau	823780000	401860000	421920000	105870000	48358000	57512000	127890000	71828000	56061000	309530000	151310000	158220000	280500000	130360000	150130000	56266	1649	52984	341669;341670;341671;341672;341673;341674;341675	460778;460779;460780;460781;460782;460783;460784;460785;460786;460787;460788;460789;460790;460791;460792	460788			15	
VQIAVANAQELLQR	0	Unmodified	1551.8733	0.87328993	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.39	4	8	2					2		2	4	6	4	74.36	73.077	2;3	3.404E-08	63460	160511_QHF_FH_JSI12i_2	97.86	88.348			1.1567	1.1063	19.537	14	1	Median	1.477	1.2804	25.346	2	0	Median	0.77503	0.96334	27.335	3	0	Plateau	1.1876	1.154	21.712	6	1	Median	1.0002	1.1022	7.0884	3	0	Plateau	1654600000	828620000	825980000	257490000	101290000	156200000	395550000	215590000	179960000	620950000	320540000	300410000	380600000	191190000	189410000	56267	5668	52985	341676;341677;341678;341679;341680;341681;341682;341683;341684;341685;341686;341687;341688;341689;341690;341691	460793;460794;460795;460796;460797;460798;460799;460800;460801;460802;460803;460804;460805;460806;460807;460808;460809;460810;460811;460812;460813;460814;460815;460816	460799			24	
VQIEHISSLIK	1	Unmodified	1265.7343	0.73433683	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		8	4						4	3	3	5	5	59.121	56.328	2;3	6.9029E-06	49580	160511_QHF_FH_JSI9i_2	85.845	78.957			0.92459	0.96077	12.812	16	0	Median	1.1836	0.99039	7.7573	3	0	Plateau	0.7574	0.94237	9.4064	3	0	Plateau	0.93621	0.89093	17.876	5	0	Median	0.91311	0.99232	9.8592	5	0	Median	4321500000	1890200000	2431300000	362750000	145990000	216750000	514400000	262460000	251940000	1632300000	728020000	904260000	1812000000	753710000	1058300000	56268	109	52986	341692;341693;341694;341695;341696;341697;341698;341699;341700;341701;341702;341703;341704;341705;341706;341707	460817;460818;460819;460820;460821;460822;460823;460824;460825;460826;460827;460828;460829;460830;460831;460832;460833;460834;460835	460821			16	
VQIFDLMDAK	1	Unmodified	1178.6005	0.60054547	3727	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		83.906	83.301	2	0.0026328	73294	160511_QHF_FH_JSI11i_2	61.56	39.814			1.0035	0.95354	4.2643	2	1	Median	1.1207	0.98273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8986	0.92522	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52340000	29585000	22755000	17618000	8680300	8937700	0	0	0	34722000	20905000	13817000	0	0	0	56269	3727	52987	341708;341709;341710	460836;460837;460838	460838			3	
VQIFEYNENTR	0	Unmodified	1411.6732	0.67319314	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	50.639	49.648	2	0.0051326	42751	160511_QHF_FH_JSI11i_2	53.756	36.919			0.91969	0.91067	19.211	3	1	Median	0.90695	0.78885	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91969	0.91067	NaN	1	0	Median	1.0508	1.154	NaN	1	0	Median	106810000	55541000	51265000	31981000	17119000	14862000	0	0	0	43938000	21921000	22017000	30888000	16502000	14386000	56270	4042	52988	341711;341712;341713	460839;460840;460841;460842	460842			4	
VQIFEYNENTRK	1	Unmodified	1539.7682	0.76815616	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.71	0.452		2	5							2	3	2		40.186	39.096	2;3	0.00019925	32548	160511_QHF_FH_JSI10i_3	67.519	60.48			0.73281	0.86241	36.453	6	2	Median	0.93938	0.77501	45.74	2	1	Median	0.65667	0.77525	38.759	3	1	Median	1.1586	1.0953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	555390000	280880000	274520000	153970000	72485000	81482000	269480000	146470000	123010000	131950000	61920000	70029000	0	0	0	56271	4042	52989	341714;341715;341716;341717;341718;341719;341720	460843;460844;460845;460846;460847;460848;460849	460845			7	
VQILKDYVR	1	Acetyl (K)	1174.671	0.67100829	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	70.464	59.763	2	0.011484	32001	160513_QHF_FH_JSI11Kac_5	60.973	20.928			0.25563	0.25205	89.287	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91331	1.1052	NaN	1	0	Median	0.25563	0.25205	NaN	1	0	Median	0.19702	0.22163	NaN	1	0	Median	56016000	41937000	14079000	0	0	0	7162300	3455700	3706600	43944000	34347000	9597000	4910100	4135000	775040	56272	1798	52990	341721;341722;341723	460850;460851;460852	460850	1818		3	
VQIPIMLVGNK	1	Unmodified	1210.7108	0.71076462	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	82	81.482	2	7.9747E-06	72791	160511_QHF_FH_JSI11i_3	128.69	107.74			0.90733	0.91713	11.783	7	1	Median	0.99019	0.87445	NaN	1	0	Median	0.79555	0.98647	NaN	1	1	Median	0.90733	0.86844	5.1709	3	0	Median	0.98872	1.0414	17.966	2	0	Median	330720000	167890000	162830000	32957000	12659000	20298000	59883000	36851000	23031000	128950000	66004000	62942000	108930000	52378000	56556000	56273	2660	52991	341724;341725;341726;341727;341728;341729;341730	460853;460854;460855;460856;460857;460858;460859;460860;460861;460862;460863	460854			11	
VQIPIMLVGNKK	2	Unmodified	1338.8057	0.80572764	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	68.978	68.048	2;3	1.244E-05	58796	160511_QHF_FH_JSI12i_3	108.37	99.859			0.77	0.80039	20.384	7	7	Median	0.83915	0.68252	43.051	2	2	Median	0.70841	0.7973	0.54611	2	2	Median	0.88786	0.8339	NaN	1	1	Median	0.82442	0.83424	11.784	2	2	Median	2846500000	1503700000	1342700000	457140000	220100000	237040000	533580000	275610000	257960000	867560000	440640000	426910000	988200000	567380000	420820000	56274	2660	52992	341731;341732;341733;341734;341735;341736;341737	460864;460865;460866;460867;460868;460869;460870;460871;460872;460873;460874	460873			11	
VQIPIMLVGNKK	2	Oxidation (M)	1354.8006	0.80064226	2660	Q15382	RHEB	GTP-binding protein Rheb	yes	yes	0	0	1	1	By MS/MS				3	0			2							2				61.208	59.684	3	9.415E-05	48901	160511_QHF_FH_JSI9i_3	74.611	64.559			1.0258	0.84256	NaN	1	1	Median	1.0258	0.84256	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135320000	58056000	77264000	135320000	58056000	77264000	0	0	0	0	0	0	0	0	0	56275	2660	52992	341738;341739	460875;460876	460876		2088	2	
VQISPDSGGLPER	0	Unmodified	1353.6888	0.6888432	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.4	6.22	4	1				2	3			1	4	2	3	47.299	41.925	2	1.8455E-05	38058	160511_QHF_FH_JSI11i_1	121.9	111.95			1.2349	1.3169	65.95	10	3	Median	1.5065	1.2285	NaN	1	0	Median	1.2349	1.474	70.808	4	2	Median	2.8829	2.7927	111.35	2	1	Median	1.0651	1.1372	4.3967	3	0	Median	3141700000	1396600000	1745100000	682280000	236140000	446140000	954120000	441830000	512280000	822530000	383360000	439170000	682780000	335270000	347510000	56276	3911	52993	341740;341741;341742;341743;341744;341745;341746;341747;341748;341749	460877;460878;460879;460880;460881;460882;460883;460884;460885;460886;460887;460888;460889;460890;460891;460892	460878			16	
VQIVSIK	1	Unmodified	785.50109	0.50108942	2531	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	39.705	38.748	2	0.037612	33152	160511_QHF_FH_JSI11i_2	48.561	10.916			0.95048	1.0129	9.3124	4	0	Median	1.1928	1.015	NaN	1	0	Median	0.88096	1.0769	NaN	1	0	Median	1.0255	1.0109	NaN	1	0	Median	0.79785	0.86608	NaN	1	0	Median	137220000	65545000	71673000	21632000	10006000	11626000	32569000	17482000	15087000	50151000	19420000	30731000	32866000	18638000	14229000	56277	2531	52994	341750;341751;341752;341753	460893	460893			1	
VQIYHNPTANSFR	0	Unmodified	1545.7688	0.76882486	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7							4	3	2	1	37.536	36.52	2;3	2.3239E-07	29801	160511_QHF_FH_JSI9i_3	127.71	114.95			0.98378	0.95858	14.017	8	2	Median	1.186	0.97933	18.876	4	1	Median	0.69004	0.8077	0.35705	2	0	Median	1.0017	0.95025	NaN	1	0	Median	0.96617	0.96703	NaN	1	1	Median	1258600000	633670000	624940000	703010000	335740000	367270000	356910000	199850000	157060000	107020000	51415000	55601000	91678000	46670000	45008000	56278	1710	52995	341754;341755;341756;341757;341758;341759;341760;341761;341762;341763	460894;460895;460896;460897;460898;460899;460900;460901;460902;460903;460904;460905;460906;460907;460908	460904			15	
VQKHQAFEAELSANQSR	1	Acetyl (K)	1983.9763	0.97625145	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		47.348	37.673	3	0.00019262	20530	160513_QHF_FH_JSI11Kac_6	73.11	62.005			0.52412	0.51218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52412	0.51218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6041400	3653000	2388300	0	0	0	0	0	0	6041400	3653000	2388300	0	0	0	56279	2470	52996	341764	460909	460909	2492		1	
VQKVQSVSQNK	2	Acetyl (K)	1285.699	0.69901396	5429	Q9UMY1	NOL7	Nucleolar protein 7	yes	yes	1	0	0	1		By MS/MS	By matching	By MS/MS	13	0						3					1	1	1	23.773	16.402	2	0.014363	10135	160513_QHF_FH_JSI12Kac_3	54.608	18.274			0.85293	0.94277	22.82	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1451	1.3045	NaN	1	0	Median	0.81753	0.84011	NaN	1	0	Median	0.85293	0.94277	NaN	1	0	Median	4852800	2859700	1993100	0	0	0	1676300	949730	726530	1039800	580680	459090	2136800	1329300	807490	56280	5429	52997	341765;341766;341767	460910;460911	460910	3409		2	
VQLAMQTYEMVDK	1	Unmodified	1554.7422	0.74220068	5440	Q9UNL4	ING4	Inhibitor of growth protein 4	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		65.918	65.533	2	0.0007932	59300	160511_QHF_FH_JSI10i_1	79.693	54.838			0.76386	0.79566	32.26	2	2	Median	NaN	NaN	NaN	0	0	Median	0.88029	0.99953	NaN	1	1	Median	0.66284	0.63337	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54764000	30662000	24102000	0	0	0	22247000	11626000	10620000	32517000	19036000	13481000	0	0	0	56281	5440	52998	341768;341769	460912;460913	460913			2	
VQLCAKMMRMR	1	3 Oxidation (M)	1470.6928	0.69276484	4089	Q96GE4	CEP95	Centrosomal protein of 95 kDa	yes	yes	0	0	3	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	21.659	20.834	2	0.020297	17777	160511_QHF_FH_JSI9i_2	40.432	28.899			0.17263	0.16803	85.364	2	2	Median	0.10907	0.091887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27322	0.30729	NaN	1	1	Median	233600000	227330000	6268700	40185000	37469000	2715800	71786000	71786000	0	72200000	72200000	0	49431000	45878000	3552900	56282	4089	52999	341770;341771;341772;341773	460914;460915;460916;460917	460915		2387;2388;2389	4	
VQLDLAETDLSQGVAR	0	Unmodified	1713.8897	0.88972785	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	71.558	71.03	2;3	1.6015E-21	64636	160511_QHF_FH_JSI11i_1	201.95	157.64			0.99386	0.93977	6.7571	8	0	Median	1.1096	0.89768	0.32553	2	0	Median	0.79101	0.92766	1.6065	2	0	Median	1.0231	1.0002	8.5845	2	0	Median	0.99	1.0115	6.4537	2	0	Median	966180000	484290000	481880000	194120000	81036000	113090000	261220000	144990000	116230000	280110000	145780000	134330000	230730000	112490000	118240000	56283	4399	53000	341774;341775;341776;341777;341778;341779;341780;341781	460918;460919;460920;460921;460922;460923;460924;460925;460926;460927;460928;460929;460930	460919			12	
VQLDTIQGELNAPTQFK	1	Unmodified	1900.9894	0.9894419	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	77.158	76.68	2;3	2.1171E-15	68094	160511_QHF_FH_JSI9i_1	184.21	160.97			0.96057	0.98039	12.46	8	1	Median	1.2123	0.98995	4.0837	2	0	Median	0.78061	0.90919	23.878	2	1	Median	1.0574	1.0234	16.771	2	0	Median	0.92506	0.94677	7.6453	2	0	Median	385330000	201470000	183860000	66553000	33105000	33449000	101700000	59516000	42182000	114630000	53546000	61081000	102450000	55301000	47148000	56284	3258	53001	341782;341783;341784;341785;341786;341787;341788;341789	460931;460932;460933;460934;460935;460936;460937;460938;460939;460940;460941;460942;460943	460942			13	
VQLFEDPTVDK	1	Unmodified	1289.6503	0.65033243	1760	P51948	MNAT1	CDK-activating kinase assembly factor MAT1	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	58.16	57.507	2	0.013764	52387	160511_QHF_FH_JSI12i_1	43.282	29.047			0.90103	0.80223	25.522	4	0	Median	0.91898	0.74632	NaN	1	0	Median	0.52555	0.59319	NaN	1	0	Median	0.88343	0.86232	NaN	1	0	Median	1.0424	1.0898	NaN	1	0	Median	158870000	91171000	67697000	51785000	32423000	19362000	30643000	17621000	13022000	40885000	20592000	20293000	35555000	20535000	15020000	56285	1760	53002	341790;341791;341792;341793	460944;460945	460945			2	
VQLGGSDQLGNIMSGYEFINK	1	Unmodified	2269.1049	0.10488236	5549	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	99.155	98.983	3	1.2538E-05	85098	160511_QHF_FH_JSI12i_2	60.278	45.188			0.48236	0.56668	2.4045	2	0	Median	NaN	NaN	NaN	0	0	Median	0.46516	0.5764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.50019	0.55713	NaN	1	0	Median	48350000	32116000	16234000	0	0	0	19723000	13904000	5818400	0	0	0	28628000	18212000	10416000	56286	5549	53003	341794;341795	460946	460946			1	
VQLIKNGK	2	Acetyl (K)	940.57057	0.57056597	1992	P62266	RPS23	40S ribosomal protein S23	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			1	2		38.727	28.953	2	0.016836	17705	160513_QHF_FH_JSI11Kac_4	65.038	32.197			0.27785	0.27202	81.49	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94525	1.1144	NaN	1	0	Median	0.27614	0.27169	0.17444	2	0	Median	NaN	NaN	NaN	0	0	Median	71820000	52717000	19102000	0	0	0	12769000	5953500	6815600	59050000	46764000	12287000	0	0	0	56287	1992	53004	341796;341797;341798	460947	460947	2018		1	
VQLISGPPAK	1	Unmodified	1008.5968	0.59678072	28	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	40.659	39.826	2	0.00031588	34199	160511_QHF_FH_JSI11i_2	78.334	62.132			0.96554	0.96455	24.951	5	0	Median	0.84497	0.74421	NaN	1	0	Median	0.687	0.85113	NaN	1	0	Median	1.045	1.032	9.5604	2	0	Median	1.3234	1.424	NaN	1	0	Median	186410000	88329000	98078000	33108000	16924000	16184000	22249000	12243000	10006000	99305000	46220000	53085000	31745000	12942000	18803000	56288	28	53005	341799;341800;341801;341802;341803	460948;460949	460949			1	
VQLLLGK	1	Unmodified	769.50617	0.5061748	839	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	48.816	47.857	2	0.020648	41965	160511_QHF_FH_JSI9i_2	52.299	17.098			1.0822	1.0851	16.04	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.66943	0.79241	NaN	1	1	Median	1.0822	1.0851	NaN	1	0	Median	0.92613	0.98014	NaN	1	0	Median	58236000	33627000	24610000	0	0	0	15736000	11573000	4163800	25274000	12932000	12341000	17226000	9121600	8104600	56289	839	53006	341804;341805;341806;341807	460950;460951;460952;460953	460951			4	
VQLLSQYDNEK	1	Unmodified	1335.667	0.66704513	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				44.695	43.473	2	0.0024859	38636	160511_QHF_FH_JSI9i_1	60.518	31.045			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56290	697	53007	341808	460954	460954			1	
VQLNVFDEQGEEDSYDLK	1	Unmodified	2126.9644	0.96440894	432	O60610	DIAPH1	Protein diaphanous homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	76.435	76.113	2	3.0308E-61	69250	160511_QHF_FH_JSI12i_1	189.86	167.39			0.85918	0.81682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85918	0.81682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21909000	14385000	7523400	0	0	0	0	0	0	21909000	14385000	7523400	0	0	0	56291	432	53008	341809;341810;341811;341812;341813;341814	460955;460956;460957;460958;460959;460960	460957			6	
VQLPAYLK	1	Unmodified	930.55385	0.55385327	3546	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	56.619	55.901	2	0.0022334	47811	160511_QHF_FH_JSI12i_2	81.635	62.904			0.84868	0.92163	21.916	8	3	Median	1.063	0.91086	NaN	1	0	Median	0.80927	0.9832	10.688	2	1	Median	1.0611	1.037	15.843	3	2	Median	0.67955	0.72359	35.754	2	0	Median	1059900000	516550000	543320000	114660000	55467000	59197000	217870000	110240000	107630000	533610000	251640000	281970000	193720000	99199000	94520000	56292	3546	53009	341815;341816;341817;341818;341819;341820;341821;341822	460961;460962;460963;460964;460965;460966;460967;460968;460969;460970	460962			10	
VQLQDRK	1	Unmodified	885.50321	0.50321468	4879	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			4							1	1	2		7.769	7.4932	2;3	0.011139	5302	160511_QHF_FH_JSI10i_3	44.447	17.845			1.2094	1.0488	22.07	4	1	Median	1.184	0.94593	NaN	1	0	Median	0.71882	0.81546	NaN	1	0	Median	1.3538	1.2501	10.232	2	1	Median	NaN	NaN	NaN	0	0	Median	348720000	171590000	177130000	127160000	52604000	74561000	108510000	62702000	45812000	113040000	56283000	56755000	0	0	0	56293	4879	53010	341823;341824;341825;341826	460971;460972	460972			2	
VQLQEAERR	0	Unmodified	1127.6047	0.60471964	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			13.186	12.424	3	0.00065371	9843	160511_QHF_FH_JSI10i_3	54.982	34.111			0.99272	1.1525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99272	1.1525	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118960000	58798000	60164000	0	0	0	118960000	58798000	60164000	0	0	0	0	0	0	56294	3328	53011	341827	460973	460973			1	
VQLQMAELVTTHK	1	Unmodified	1496.8021	0.80209882	4735	Q9H5N1	RABEP2	Rab GTPase-binding effector protein 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	60.323	60.055	3	0.00028181	51680	160511_QHF_FH_JSI12i_3	64.842	47.256			0.83967	0.8821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83967	0.8821	NaN	1	0	Median	58089000	38091000	19999000	0	0	0	0	0	0	0	0	0	58089000	38091000	19999000	56295	4735	53012	341828	460974	460974			1	
VQLSGPQEAEK	1	Unmodified	1184.6037	0.60371659	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.595	24.039	2	0.00030488	20776	160511_QHF_FH_JSI11i_1	76.228	54.142			1.0922	1.145	8.2805	4	0	Median	1.5115	1.2245	NaN	1	0	Median	1.07	1.2423	NaN	1	0	Median	1.1148	1.0706	NaN	1	0	Median	1.0043	1.0673	NaN	1	0	Median	3922000000	1975200000	1946800000	892150000	391460000	500700000	1063400000	578040000	485310000	1116500000	534230000	582270000	849950000	471430000	378520000	56296	5448	53013	341829;341830;341831;341832	460975;460976;460977;460978;460979;460980;460981	460976			7	
VQLTTCIHHIIK	1	Unmodified	1461.8126	0.81260393	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			9						9	4	5	3	6	51.537	45.919	2;3;4	8.7095E-13	25011	160513_QHF_FH_JSI10Kac_6	119.45	119.45			0.97602	1.1329	19.955	14	1	Plateau	1.513	1.3291	16.013	3	0	Median	1.0285	1.2202	15.091	3	0	Plateau	0.7815	0.73268	17.941	3	0	Plateau	1.1814	1.2181	17.881	5	1	Median	1116400000	555380000	561020000	125570000	55071000	70501000	235410000	129550000	105860000	234730000	124510000	110220000	520690000	246250000	274440000	56297	686	53014	341833;341834;341835;341836;341837;341838;341839;341840;341841;341842;341843;341844;341845;341846;341847;341848;341849;341850	460982;460983;460984;460985;460986;460987;460988;460989;460990;460991;460992;460993;460994;460995;460996;460997;460998;460999;461000	460999			17	
VQLVVGDGR	0	Unmodified	941.52943	0.52942943	1202	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.5	3						3			1	2	1	2	38.461	33.079	2	0.0016754	30183	160511_QHF_FH_JSI12i_1	68.016	32.66			1.0007	1.0694	10.367	6	0	Median	1.3328	1.0908	NaN	1	0	Median	0.999	1.1824	13.542	2	0	Median	0.97324	0.94958	NaN	1	0	Median	1.0007	1.0478	2.2154	2	0	Median	511510000	249270000	262240000	137950000	61489000	76461000	226950000	109370000	117590000	7486600	4147700	3338900	139120000	74271000	64851000	56298	1202	53015	341851;341852;341853;341854;341855;341856	461001;461002;461003;461004;461005;461006;461007;461008	461002			8	
VQLYNLHPFGSQQVVPCK	1	Unmodified	2113.0779	0.077879751	3935	Q969F9	HPS3	Hermansky-Pudlak syndrome 3 protein	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		70.27	70.27	3	0.00036723	62649	160511_QHF_FH_JSI11i_3	62.765	52.484			0.68642	0.62947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68642	0.62947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28321000	18928000	9392700	0	0	0	0	0	0	28321000	18928000	9392700	0	0	0	56299	3935	53016	341857	461009	461009			1	
VQMGVPFTEQIIQTFLNMFTR	0	Unmodified	2499.2654	0.26542252	4214	Q96QU8	XPO6	Exportin-6	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			105.31	99.59	3	1.1119E-07	59000	160513_QHF_FH_JSI10Kac_6	128.01	109.24			0.93248	1.1169	3.2872	2	2	Median	NaN	NaN	NaN	0	0	Median	0.93248	1.1169	3.2872	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	308220000	152820000	155410000	0	0	0	308220000	152820000	155410000	0	0	0	0	0	0	56300	4214	53017	341858;341859	461010;461011	461011			2	
VQMLLSDR	0	Unmodified	960.50625	0.50625115	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		40.524	39.77	2	0.0076141	34823	160511_QHF_FH_JSI9i_2	65.252	22.252			1.0139	0.94901	21.591	2	0	Median	0.95297	0.81465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0787	1.1055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	242860000	125740000	117120000	85545000	42479000	43066000	0	0	0	157310000	83258000	74056000	0	0	0	56301	3101	53018	341860;341861	461012	461012			1	
VQMPSFK	1	Unmodified	835.42621	0.42620992	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	44.302	44.183	2	0.017401	37791	160511_QHF_FH_JSI12i_3	62.717	28.979			1.0777	1.0527	3.4091	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0882	1.0276	NaN	1	1	Median	1.0674	1.0784	NaN	1	1	Median	196240000	101940000	94309000	0	0	0	0	0	0	76063000	43442000	32621000	120180000	58493000	61688000	56302	3405	53019	341862;341863	461013;461014	461014			2	
VQMTSPSSTGSPMFK	1	Unmodified	1583.7324	0.73236428	1684	P49790	NUP153	Nuclear pore complex protein Nup153	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	1	2	49.572	48.735	2	8.5815E-05	41698	160511_QHF_FH_JSI12i_2	110.66	85.807			0.93775	1.041	11.525	6	1	Median	1.5056	1.2939	NaN	1	0	Median	0.90862	1.0743	3.8791	2	1	Median	1.0443	1.0367	NaN	1	0	Median	0.90508	0.96578	8.3834	2	0	Median	211560000	100870000	110690000	38722000	12869000	25853000	60537000	30064000	30473000	43560000	19287000	24274000	68743000	38650000	30093000	56303	1684	53020	341864;341865;341866;341867;341868;341869	461015;461016;461017;461018;461019;461020;461021;461022;461023	461016			9	
VQNATLAVANITNADSATR	0	Unmodified	1928.9916	0.99156716	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	58.045	57.418	2;3	2.3008E-13	51961	160511_QHF_FH_JSI11i_1	166.6	143.68			0.88839	0.87417	7.1124	9	2	Median	0.95807	0.78797	0.60021	2	0	Median	0.683	0.79312	1.6399	2	0	Median	0.91138	0.9022	2.481	3	2	Median	0.86857	0.90576	2.7388	2	0	Median	1198600000	638910000	559730000	283170000	137970000	145200000	237850000	131930000	105920000	427030000	224360000	202670000	250600000	144660000	105940000	56304	1286	53021	341870;341871;341872;341873;341874;341875;341876;341877;341878	461024;461025;461026;461027;461028;461029;461030;461031;461032;461033;461034;461035;461036;461037;461038;461039;461040;461041;461042	461026			19	
VQNEDVQR	0	Unmodified	986.47812	0.47812215	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	6.1678	5.771	2	0.0030375	3794	160511_QHF_FH_JSI12i_1	82.241	53.728			0.81863	0.83584	6.3654	3	3	Median	0.97277	0.79508	NaN	1	1	Median	0.76091	0.9022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81863	0.83584	NaN	1	1	Median	213410000	109370000	104050000	73232000	38224000	35008000	74214000	40220000	33994000	0	0	0	65968000	30925000	35043000	56305	4330	53022	341879;341880;341881	461043;461044;461045	461043			3	
VQNIHPVESAK	1	Unmodified	1220.6513	0.65133548	2100	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							3	2	4	3	13.714	13.344	2;3	4.3143E-05	10166	160511_QHF_FH_JSI12i_3	111.06	72.035			0.88535	0.95026	25.799	12	3	Median	1.144	1.0085	34.485	3	2	Median	0.8153	1.005	16.326	2	0	Median	1.0658	1.037	23.618	4	0	Median	1.0058	1.012	26.415	3	1	Plateau	954110000	478240000	475870000	156870000	76787000	80085000	142070000	85537000	56534000	397030000	180160000	216880000	258130000	135760000	122370000	56306	2100	53023	341882;341883;341884;341885;341886;341887;341888;341889;341890;341891;341892;341893	461046;461047;461048;461049;461050;461051;461052;461053;461054;461055;461056;461057;461058;461059;461060;461061;461062	461061			17	
VQNLLGHYLIHGFR	0	Unmodified	1665.9103	0.91034414	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.909	68.399	4	0.00025776	37293	160513_QHF_FH_JSI10Kac_6	68.034	56.342			0.28065	0.32251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28065	0.32251	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15244000	11231000	4012900	0	0	0	15244000	11231000	4012900	0	0	0	0	0	0	56307	4878	53024	341894	461063	461063			1	
VQNMALYADVGGK	1	Unmodified	1364.6758	0.67583567	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.881	4	1	2							2	2	1	2	50.884	49.874	2	7.005E-17	44396	160511_QHF_FH_JSI9i_1	137.89	116.43			0.92937	0.94037	24.997	6	1	Median	0.89699	0.72237	NaN	1	1	Median	0.80293	0.92352	4.6062	2	0	Median	0.96292	0.92684	NaN	1	0	Median	1.237	1.3358	13.615	2	0	Median	1815500000	1010200000	805290000	18110000	10186000	7923700	621400000	406380000	215020000	499720000	252260000	247460000	676270000	341390000	334880000	56308	1740	53025	341895;341896;341897;341898;341899;341900;341901	461064;461065;461066;461067;461068;461069;461070;461071;461072;461073;461074;461075;461076;461077	461077			14	
VQNMALYADVGGK	1	Oxidation (M)	1380.6708	0.6707503	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	5	5.66	2					1						1	2	39.267	36.022	2	0.0062278	32496	160511_QHF_FH_JSI12i_1	73.951	53.961			1.1686	1.1157	32.289	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1686	1.1157	NaN	1	1	Median	1.3683	1.4704	39.713	2	1	Median	57562000	22803000	34758000	0	0	0	0	0	0	32856000	14981000	17875000	24705000	7821900	16883000	56309	1740	53025	341902;341903;341904	461078;461079;461080	461079		1424	3	
VQNNSVIINCDGFYLISLK	1	Unmodified	2196.1249	0.12488952	1232	P23510	TNFSF4	Tumor necrosis factor ligand superfamily member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	88.146	88.091	3	0.0009769	76338	160511_QHF_FH_JSI12i_3	32.55	17.46			1.1431	1.1419	28.573	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97305	0.93301	NaN	1	0	Median	1.3429	1.3976	NaN	1	0	Median	881120000	377490000	503630000	0	0	0	0	0	0	307330000	138420000	168910000	573790000	239070000	334720000	56310	1232	53026	341905;341906	461081;461082;461083;461084;461085	461084			5	
VQNTSLEAIVQNASSDNQGIQLSAVQAAR	0	Unmodified	3011.5272	0.52720419	158	O00629	KPNA4	Importin subunit alpha-3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			90.786	90.726	3	1.8162E-05	82325	160511_QHF_FH_JSI10i_1	47.73	36.314			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56311	158	53027	341907	461086	461086			1	
VQPEAQAK	1	Unmodified	869.46068	0.46068117	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	5.65	4	1			3	3				1	3	4	3	7.6002	3.5074	2	0.0020959	4582	160511_QHF_FH_JSI10i_1	82.671	56.777			1.0108	1.0168	9.3619	11	0	Median	1.2353	1.0168	NaN	1	0	Median	0.84433	1.0584	4.4296	3	0	Plateau	1.0734	1.0243	12.741	4	0	Median	1.0527	1.1329	9.4607	3	0	Median	4888600000	2596100000	2292500000	1509600000	774850000	734710000	1196800000	666420000	530330000	991230000	496330000	494900000	1191000000	658490000	532560000	56312	2244	53028	341908;341909;341910;341911;341912;341913;341914;341915;341916;341917;341918	461087;461088;461089;461090;461091;461092;461093;461094;461095;461096;461097;461098;461099	461091			13	
VQPIKLAR	1	Acetyl (K)	965.6022	0.60220045	2028	P62857	RPS28	40S ribosomal protein S28	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.8	0.433							1	3			1	1	2	48.569	38.223	2	0.026093	21416	160513_QHF_FH_JSI11Kac_5	58.981	21.96			0.66488	0.71337	51.297	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0667	1.2631	NaN	1	0	Median	0.37129	0.36443	NaN	1	0	Median	0.66488	0.71337	11.99	2	0	Median	23998000	15858000	8140100	0	0	0	4416200	2273900	2142200	11041000	8264600	2776200	8540700	5319000	3221600	56313	2028	53029	341919;341920;341921;341922	461100	461100	2071		1	
VQPNEAVYTK	1	Unmodified	1147.5873	0.58733824	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.22	4	1	2			3				1	4	3	2	25.56	22.529	2	1.562E-09	19118	160511_QHF_FH_JSI9i_1	133.57	123.66			0.87817	0.95288	45.608	10	2	Median	1.2119	1.0082	NaN	1	0	Median	0.80758	0.95715	73.549	4	2	Median	0.93194	0.91526	29.349	3	0	Median	0.87673	0.94483	5.3922	2	0	Median	7826500000	3859000000	3967500000	1650600000	510530000	1140100000	1699800000	977470000	722350000	1725200000	912310000	812890000	2750900000	1458700000	1292200000	56314	1000	53030	341923;341924;341925;341926;341927;341928;341929;341930;341931;341932	461101;461102;461103;461104;461105;461106;461107;461108;461109;461110;461111;461112;461113;461114;461115;461116;461117	461111			17	
VQPPPETPAEEEMETETEAEALQEK	1	Unmodified	2811.2644	0.26441529	3483	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										2	2	1	71.799	71.422	3	4.5083E-11	64643	160511_QHF_FH_JSI10i_1	87.196	84.756			0.87692	0.98846	32.526	3	1	Median	NaN	NaN	NaN	0	0	Median	0.87692	1.0197	NaN	1	0	Median	0.60571	0.57192	NaN	1	1	Median	0.96699	0.98846	NaN	1	0	Median	208230000	124140000	84089000	0	0	0	48623000	24278000	24345000	92021000	58457000	33564000	67582000	41403000	26180000	56315	3483	53031	341933;341934;341935;341936;341937	461118;461119;461120;461121;461122;461123	461122			6	
VQPQWSPPAGTQPCR	0	Unmodified	1707.8151	0.81512312	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS		1.67	0.471	1	2										3		44.166	43.73	2	0.012884	39355	160511_QHF_FH_JSI11i_1	54.7	39.16			1.2988	1.2688	39.836	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2988	1.2688	39.836	2	2	Median	NaN	NaN	NaN	0	0	Median	54577000	24274000	30303000	0	0	0	0	0	0	54577000	24274000	30303000	0	0	0	56316	1665	53032	341938;341939;341940	461124;461125;461126	461124			3	
VQPSDQVGK	1	Unmodified	956.49271	0.49270958	957	P0DN79;P35520	CBS	Cystathionine beta-synthase	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2					1	3	1	11.972	9.9437	2	4.4439E-06	8489	160511_QHF_FH_JSI10i_1	119.29	86.82			1.0129	1.0945	34.824	4	1	Median	NaN	NaN	NaN	0	0	Median	0.97987	1.1561	NaN	1	0	Median	1.4847	1.4601	48.512	2	1	Median	0.90041	0.9514	NaN	1	0	Median	1404700000	780370000	624330000	0	0	0	521670000	307220000	214450000	446470000	229270000	217200000	436560000	243880000	192680000	56317	957	53033	341941;341942;341943;341944;341945	461127;461128;461129;461130;461131;461132;461133;461134	461134			8	
VQPTHVIHLAAMVGGLFR	0	Unmodified	1945.072	0.072006512	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	4	1	1	85.215	77.662	2;3;4	8.0638E-12	42292	160513_QHF_FH_JSI9Kac_6	123.55	107.06			0.97001	0.96829	18.038	7	0	Median	1.0585	0.90325	9.8345	2	0	Median	0.78851	0.94388	11.696	3	0	Plateau	1.3429	1.2702	NaN	1	0	Median	1.1884	1.2525	NaN	1	0	Median	1845500000	1011000000	834430000	443150000	199950000	243200000	1102000000	700820000	401170000	224940000	75401000	149540000	75404000	34883000	40521000	56318	2460	53034	341946;341947;341948;341949;341950;341951;341952;341953	461135;461136;461137;461138;461139;461140;461141;461142;461143;461144;461145	461138			10	
VQPTHVIHLAAMVGGLFR	0	Oxidation (M)	1961.0669	0.066921134	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			79.221	73.58	4	0.024277	40229	160513_QHF_FH_JSI10Kac_6	31.462	25.339			0.669	0.77618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.669	0.77618	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61039000	45735000	15304000	0	0	0	61039000	45735000	15304000	0	0	0	0	0	0	56319	2460	53034	341954	461146	461146			0	
VQPVIGENGGDAR	0	Unmodified	1310.6579	0.65787742	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.349	24.789	2	0.00023184	21839	160511_QHF_FH_JSI10i_1	94.616	69.693			1.1056	1.0171	11.867	4	0	Median	1.185	0.98088	NaN	1	0	Median	0.77168	0.89808	NaN	1	0	Median	1.2268	1.189	NaN	1	0	Median	1.0315	1.0547	NaN	1	0	Median	308950000	157060000	151880000	76213000	30133000	46080000	87175000	58138000	29037000	78873000	38442000	40431000	66685000	30349000	36336000	56320	1201	53035	341955;341956;341957;341958	461147;461148;461149;461150;461151;461152	461150			5	
VQPVMAPDVPATPVAPTESQTVLDALQQR	0	Unmodified	3057.5805	0.58048531	2933	Q5T0F9	CC2D1B	Coiled-coil and C2 domain-containing protein 1B	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	100.75	100.6	3	0.0087887	91099	160511_QHF_FH_JSI12i_1	31.261	26.008			0.78348	0.81513	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78348	0.81513	NaN	1	1	Median	19718000	15119000	4598900	0	0	0	0	0	0	0	0	0	19718000	15119000	4598900	56321	2933	53036	341959	461153	461153			1	
VQPYLDEFQK	1	Unmodified	1265.6292	0.62920306	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	55.417	53.395	2	4.9343E-05	48298	160511_QHF_FH_JSI11i_1	107.57	64.976		+	0.92344	0.88395	40.511	8	2	Median	0.80733	0.65166	NaN	1	0	Median	0.54365	0.67002	19.619	2	0	Median	1.2241	1.2123	25.11	2	0	Median	1.0562	1.1177	46.477	3	2	Median	1357600000	740530000	617030000	234610000	130220000	104390000	342660000	223020000	119640000	389630000	186020000	203610000	390670000	201270000	189400000	56322	58	53037	341960;341961;341962;341963;341964;341965;341966;341967;341968	461154;461155;461156;461157;461158;461159;461160;461161;461162;461163;461164;461165;461166;461167	461154			14	
VQQACEMVMDILR	0	Unmodified	1591.7521	0.75205386	3911	Q92945	KHSRP	Far upstream element-binding protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	3	1	88.246	87.598	2;3	0.00012849	77694	160511_QHF_FH_JSI10i_2	85.963	75.655			1.0901	1.1242	15.93	4	2	Median	NaN	NaN	NaN	0	0	Median	1.1933	1.4717	NaN	1	0	Median	1.0901	1.0823	8.6169	2	1	Median	1.001	1.0987	NaN	1	1	Median	189190000	91704000	97486000	0	0	0	46882000	19626000	27256000	81850000	43457000	38393000	60458000	28621000	31837000	56323	3911	53038	341969;341970;341971;341972;341973	461168;461169;461170;461171	461171			4	
VQQAELHTGSLPR	0	Unmodified	1434.7579	0.75792582	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	4.8	5.11		3	1					1		2	2		1	30.668	27.72	3	4.7262E-05	23164	160511_QHF_FH_JSI12i_3	85.837	69.365			1.8421	1.8794	53.728	4	2	Median	2.5028	2.1351	69.778	2	0	Median	2.2156	2.7098	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1644	1.1776	NaN	1	1	Median	415990000	136880000	279100000	179720000	38514000	141200000	128620000	43573000	85049000	0	0	0	107650000	54794000	52852000	56324	2348	53039	341974;341975;341976;341977;341978	461172;461173;461174;461175;461176	461176			5	
VQQAGEMQNWAQVHGVLK	1	Unmodified	2022.0105	0.010528467	4403	Q9BST9	RTKN	Rhotekin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.306	58.175	3	0.00092421	50004	160511_QHF_FH_JSI12i_3	48.907	39.249			0.90863	0.8759	30.371	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78286	0.70663	NaN	1	1	Median	1.0546	1.0857	NaN	1	0	Median	98358000	52595000	45763000	0	0	0	0	0	0	33564000	17583000	15982000	64793000	35012000	29781000	56325	4403	53040	341979;341980	461177;461178;461179	461178			3	
VQQELSRPGMLEMLLPGQPEAVAR	0	Unmodified	2648.3778	0.37782652	1629	P48637	GSS	Glutathione synthetase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			90.465	89.789	3	2.236E-07	73736	160511_QHF_FH_JSI9i_3	71.174	45.169			1.2534	1.1144	6.4773	3	1	Median	1.2895	1.0738	5.2502	2	1	Median	0.94805	1.1772	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	79110000	37210000	41900000	59785000	28060000	31725000	19326000	9150200	10175000	0	0	0	0	0	0	56326	1629	53041	341981;341982;341983	461180;461181;461182;461183;461184;461185	461180			6	
VQQGERDFEQISK	1	Unmodified	1562.7689	0.76888444	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	3	2	1	25.495	24.957	2;3	0.00011	21105	160511_QHF_FH_JSI11i_3	76.588	57.265			0.93755	1.0363	18.862	7	2	Median	1.2955	1.0686	NaN	1	0	Median	0.93755	1.1663	21.785	3	2	Median	0.94822	0.88651	22.08	2	0	Median	0.89252	0.88992	NaN	1	0	Median	692420000	353950000	338470000	25779000	8166100	17613000	289920000	159870000	130040000	322860000	160500000	162360000	53866000	25414000	28452000	56327	444	53042	341984;341985;341986;341987;341988;341989;341990	461186;461187;461188;461189;461190;461191	461186			6	
VQQGFLK	1	Unmodified	818.46504	0.46503826	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	1	2	24.977	24.266	2	0.029275	20836	160511_QHF_FH_JSI9i_2	52.683	27.685			1.0045	1.0212	15.759	5	0	Median	1.2508	1.0645	NaN	1	0	Median	0.77379	0.9671	NaN	1	0	Median	1.0045	1.0212	NaN	1	0	Median	0.85724	0.92302	28.891	2	0	Median	526540000	270130000	256420000	82663000	40117000	42546000	103940000	58660000	45283000	181620000	88860000	92763000	158320000	82488000	75827000	56328	485	53043	341991;341992;341993;341994;341995	461192;461193	461192			2	
VQQLLHICSEHFDSK	1	Unmodified	1839.8938	0.89376737	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	1	2	3	3	49.563	46.713	3;4	0.00029131	39754	160511_QHF_FH_JSI12i_3	75.463	58.384			0.7775	0.78724	99.75	7	7	Median	NaN	NaN	NaN	0	0	Median	2.1866	2.6664	162.48	2	2	Median	0.64562	0.62311	26.756	2	2	Median	0.7775	0.78724	73.601	3	3	Median	900350000	328930000	571420000	0	0	0	306990000	35855000	271130000	247140000	113510000	133630000	346220000	179570000	166650000	56329	2370	53044	341996;341997;341998;341999;342000;342001;342002;342003;342004	461194;461195;461196;461197;461198;461199;461200;461201;461202	461201			9	
VQQLMAK	1	Unmodified	816.45276	0.45275902	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.4	0.49	3	2								1	1	3		16.088	15.7	2	0.017405	12734	160511_QHF_FH_JSI11i_2	62.714	8.1891			1.0582	1.0735	99.911	5	1	Median	1.66	1.3587	NaN	1	0	Median	1.2483	1.4678	NaN	1	0	Median	0.91854	0.90376	116.5	3	1	Median	NaN	NaN	NaN	0	0	Median	1096000000	579530000	516470000	185380000	74150000	111230000	396450000	201910000	194540000	514170000	303470000	210700000	0	0	0	56330	2217	53045	342005;342006;342007;342008;342009	461203;461204;461205;461206;461207;461208;461209;461210	461210			8	
VQQLVAK	1	Unmodified	784.48069	0.48068833	5709	Q9Y679	AUP1	Ancient ubiquitous protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	14.449	14.114	2	0.015357	11590	160511_QHF_FH_JSI10i_1	64.776	23.274			0.87366	0.94749	21.2	2	1	Median	NaN	NaN	NaN	0	0	Median	0.70196	0.81559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0874	1.1007	NaN	1	1	Median	392570000	236250000	156320000	0	0	0	209380000	137590000	71784000	0	0	0	183190000	98661000	84533000	56331	5709	53046	342010;342011	461211;461212	461212			2	
VQQLVEDIK	1	Unmodified	1070.5972	0.59717465	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	38.629	38.058	2	0.00075572	34136	160511_QHF_FH_JSI11i_1	85.744	48.903			3.0922	3.0024	89.277	5	5	Median	3.0193	2.4608	NaN	1	1	Median	1.3368	1.5583	156.38	2	2	Median	3.0922	3.0024	NaN	1	1	Median	4.1225	4.2231	NaN	1	1	Median	392710000	159360000	233360000	61390000	22855000	38535000	173500000	85333000	88169000	88710000	25883000	62827000	69108000	25284000	43824000	56332	714	53047	342012;342013;342014;342015;342016	461213;461214;461215;461216;461217	461213			5	
VQQLVPK	1	Unmodified	810.49634	0.49633839	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.764	4	1	1							3	1	1	1	20.799	20.095	2	0.016664	17046	160511_QHF_FH_JSI9i_1	62.715	30.245			0.61947	0.56872	47.707	6	1	Median	0.54096	0.44036	30.79	3	1	Median	0.46223	0.53517	NaN	1	0	Median	1.1486	1.1369	NaN	1	0	Median	0.92707	0.99196	NaN	1	0	Median	1543800000	855480000	688310000	424270000	273930000	150330000	311280000	220020000	91260000	441930000	190490000	251440000	366300000	171040000	195270000	56333	361	53048	342017;342018;342019;342020;342021;342022	461218;461219;461220;461221;461222;461223;461224	461223			7	
VQQLVPKRDHALLEEQSK	2	Acetyl (K)	2159.1699	0.16986588	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		52.932	43.207	4	0.0059941	23405	160513_QHF_FH_JSI11Kac_6	50.938	41.891			0.56511	0.55351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56511	0.55351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13906000	9259200	4647000	0	0	0	0	0	0	13906000	9259200	4647000	0	0	0	56334	361	53049	342023	461225	461225	184		1	
VQQQALHSQQQLEAEAQK	1	Unmodified	2063.0396	0.039579989	709	O95613	PCNT	Pericentrin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.342	87.786	3	0.05361	77258	160511_QHF_FH_JSI11i_2	24.287	14.23			1.8565	1.8036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8565	1.8036	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17611000	8275900	9334900	0	0	0	0	0	0	17611000	8275900	9334900	0	0	0	56335	709	53050	342024	461226	461226			1	
VQQQEDEITVLK	1	Unmodified	1428.746	0.74602373	4848	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	42.975	42.319	2	2.6259E-07	38184	160511_QHF_FH_JSI11i_1	152.07	128.64			1.0025	0.90058	13.364	4	0	Median	1.0655	0.88381	NaN	1	0	Median	0.70583	0.82289	NaN	1	0	Median	0.94322	0.91767	NaN	1	0	Median	1.1077	1.1238	NaN	1	0	Median	623350000	336330000	287020000	114720000	64021000	50696000	161630000	98807000	62824000	169200000	98848000	70347000	177800000	74656000	103150000	56336	4848	53051	342025;342026;342027;342028	461227;461228;461229;461230;461231;461232;461233	461227			7	
VQQSLGTRK	1	Unmodified	1015.5774	0.57744226	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							1	2			6.4168	5.9116	2;3	0.0081754	3909	160511_QHF_FH_JSI10i_3	52.716	28.744			1.224	1.154	13.918	3	1	Plateau	1.2499	1.0201	NaN	1	0	Median	1.0781	1.2466	10.918	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	185460000	88791000	96671000	56080000	27484000	28596000	129380000	61307000	68075000	0	0	0	0	0	0	56337	5722	53052	342029;342030;342031	461234;461235	461234			2	
VQQSSESSTSSPSQHEATPGAR	0	Unmodified	2257.0207	0.02069504	484	O75152;A0A1B0GTU1	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	2	3	10.343	9.965	3	2.774E-11	7865	160511_QHF_FH_JSI12i_1	112.85	105.63			1.0373	0.99801	13.939	6	0	Median	1.1359	0.9785	NaN	1	0	Median	0.7837	0.95579	NaN	1	0	Median	0.94725	0.94488	NaN	1	0	Median	1.1859	1.2065	13.228	3	0	Median	283830000	134830000	149000000	44889000	23129000	21760000	35372000	16076000	19296000	56582000	26957000	29625000	146990000	68671000	78322000	56338	484	53053	342032;342033;342034;342035;342036;342037;342038	461236;461237;461238;461239;461240;461241;461242;461243;461244;461245;461246;461247;461248;461249;461250	461239			15	
VQQTVQDLFGR	0	Unmodified	1289.6728	0.67279921	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.37	4	4	4				3	5	1	5	5	5	6	58.692	53.687	2	1.0976E-29	46074	160511_QHF_FH_JSI12i_2	190.24	152.15			0.97639	0.97888	27.816	21	4	Median	1.1322	0.92664	46.051	5	1	Median	0.79108	0.9508	24.326	5	1	Median	1.0083	0.98118	5.1553	5	1	Median	1.0057	1.008	6.015	6	1	Linear	18799000000	9385500000	9413600000	2723400000	1259400000	1463900000	5137100000	2810700000	2326500000	6955100000	3351700000	3603400000	3983400000	1963700000	2019700000	56339	1480	53054	342039;342040;342041;342042;342043;342044;342045;342046;342047;342048;342049;342050;342051;342052;342053;342054;342055;342056;342057;342058;342059	461251;461252;461253;461254;461255;461256;461257;461258;461259;461260;461261;461262;461263;461264;461265;461266;461267;461268;461269;461270;461271;461272;461273;461274;461275;461276;461277;461278;461279;461280;461281;461282;461283;461284	461256			34	
VQQTVQDLFGRAPSK	1	Unmodified	1672.8897	0.88966827	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By matching	By matching	3	0			4								2	1	1	50.565	49.723	2;3	9.8961E-07	41577	160511_QHF_FH_JSI10i_3	127.71	100.3			1.1835	1.3485	31.132	4	1	Median	NaN	NaN	NaN	0	0	Median	1.4213	1.6255	12.505	2	1	Median	0.93248	0.85905	NaN	1	0	Median	1.0827	1.2221	NaN	1	0	Median	601430000	192710000	408720000	0	0	0	378030000	93804000	284230000	149930000	61993000	87936000	73475000	36917000	36558000	56340	1480	53055	342060;342061;342062;342063	461285;461286	461285			2	
VQQVQPAMQAVIR	0	Unmodified	1466.8028	0.80276752	4260	Q96TA1	FAM129B	Niban-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	4.3	7						1			1	2	3	2	51.002	49.095	2;3	0.00011636	44624	160511_QHF_FH_JSI12i_1	89.247	42.049			1.1079	1.1246	29.078	8	5	Median	1.6237	1.3516	NaN	1	0	Median	0.84213	0.97916	11.713	2	2	Median	1.1579	1.1353	43.392	3	3	Median	1.2629	1.3395	26.061	2	0	Median	1335300000	673980000	661330000	163780000	81977000	81801000	415660000	229300000	186360000	455720000	219030000	236680000	300160000	143670000	156490000	56341	4260	53056	342064;342065;342066;342067;342068;342069;342070;342071	461287;461288;461289;461290;461291;461292;461293;461294	461289			7	
VQQWDSQVTMGHLFQK	1	Unmodified	1930.936	0.93596654	2335	Q12979	ABR	Active breakpoint cluster region-related protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	69.424	68.543	3	0.00020195	59136	160511_QHF_FH_JSI12i_3	74.726	64.669			1.6229	1.7777	27.399	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2336	1.4646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1349	2.1578	NaN	1	1	Median	245810000	85647000	160160000	0	0	0	55680000	25134000	30546000	0	0	0	190130000	60513000	129620000	56342	2335	53057	342072;342073	461295;461296	461296			2	
VQREPLLTLVK	1	Unmodified	1294.7973	0.79727144	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		54.673	53.634	3	0.00032737	44190	160511_QHF_FH_JSI9i_3	68.536	57.926			1.1117	0.9759	12.422	3	1	Plateau	1.1225	0.89713	NaN	1	0	Median	0.71146	0.83306	NaN	1	1	Median	1.1117	1.0616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	709970000	340110000	369860000	242980000	112350000	130630000	220580000	120620000	99961000	246410000	107140000	139270000	0	0	0	56343	2370	53058	342074;342075;342076;342077	461297;461298;461299;461300;461301;461302	461301			6	
VQRPPSAASAAPSSSK	1	Unmodified	1539.8005	0.80051892	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			13.09	12.263	3	0.00041163	9571	160511_QHF_FH_JSI9i_3	59.261	47.346			0.93246	0.90987	10.392	2	0	Median	1.0453	0.8454	NaN	1	0	Median	0.83184	0.97925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60700000	32252000	28449000	43828000	22356000	21472000	16872000	9895300	6976600	0	0	0	0	0	0	56344	2925	53059	342078;342079	461303	461303			1	
VQSATHFK	1	Unmodified	916.47667	0.47666558	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								2	1	1	7.9423	7.7103	2	0.0055661	5120	160511_QHF_FH_JSI12i_3	65.246	37.14			0.93054	0.94731	20.621	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7202	0.85972	34.304	2	0	Median	1.0398	0.96207	NaN	1	0	Median	0.91813	0.93277	NaN	1	0	Median	385990000	195550000	190440000	0	0	0	82684000	49396000	33288000	114440000	58508000	55932000	188860000	87648000	101220000	56345	507;5432	53060	342080;342081;342082;342083	461304;461305;461306;461307	461306			4	
VQSATHFKK	2	Unmodified	1044.5716	0.5716286	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	2	2		6.0022	5.6625	2;3	0.00082555	3655	160511_QHF_FH_JSI10i_3	73.665	51.534			1.1497	1.1058	28.845	6	0	Median	1.4043	1.1527	6.7964	2	0	Median	0.85038	0.9934	16.092	2	0	Median	1.4485	1.3623	53.449	2	0	Median	NaN	NaN	NaN	0	0	Median	1354500000	678570000	675890000	447750000	164740000	283010000	406620000	226260000	180360000	500090000	287570000	212520000	0	0	0	56346	507;5432	53061	342084;342085;342086;342087;342088;342089	461308;461309;461310;461311;461312;461313;461314;461315;461316	461310			9	
VQSDGQIVLVDDWIK	1	Unmodified	1713.8938	0.8937506	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	5									3		1	1	89.887	89.342	2;3	1.4604E-21	79615	160511_QHF_FH_JSI9i_1	141.32	116.97			0.98341	1.0457	18.231	3	0	Plateau	0.91185	0.74449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0093	0.9895	NaN	1	0	Median	0.98341	1.0457	NaN	1	0	Median	106940000	54540000	52399000	16025000	8031900	7992700	0	0	0	41179000	23007000	18171000	49736000	23501000	26235000	56347	2265	53062	342090;342091;342092;342093;342094	461317;461318;461319	461319			3	
VQSFFQK	1	Unmodified	882.45995	0.45995289	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	34.207	34.097	2	0.024235	28951	160511_QHF_FH_JSI12i_3	58.167	42.06			2.4676	2.4725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.4676	2.4725	NaN	1	1	Median	160450000	27848000	132600000	0	0	0	0	0	0	0	0	0	160450000	27848000	132600000	56348	135	53063	342095	461320	461320			1	
VQSFQMK	1	Unmodified	866.43202	0.43202358	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	22.702	21.853	2	0.012734	18168	160511_QHF_FH_JSI12i_2	68.915	37.625			1.2385	1.3925	11.867	4	0	Median	1.7991	1.5465	NaN	1	0	Median	1.0981	1.3772	NaN	1	0	Median	1.3969	1.4079	NaN	1	0	Median	1.038	1.1631	NaN	1	0	Median	1153300000	475800000	677530000	261290000	90253000	171030000	298280000	133820000	164460000	338720000	151990000	186720000	255050000	99728000	155320000	56349	4212	53064	342096;342097;342098;342099	461321;461322;461323;461324;461325;461326	461321			6	
VQSGMGLILQGYESGSEEEGEIHEK	1	Unmodified	2705.249	0.24904	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		73.071	73.071	3	5.1305E-09	65166	160511_QHF_FH_JSI11i_3	72.569	68.765			0.68523	0.64049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68523	0.64049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45252000	34050000	11202000	0	0	0	0	0	0	45252000	34050000	11202000	0	0	0	56350	2432	53065	342100	461327;461328	461328			2	
VQSGNINAAK	1	Unmodified	1000.5302	0.53015772	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.6	4	4	4			2	1			3	3	4	5	10.286	8.5274	2	2.085E-07	7122	160511_QHF_FH_JSI12i_1	116.73	54.011			0.96801	0.98945	9.5772	15	0	Median	1.1251	0.94265	7.3467	3	0	Plateau	0.9228	1.1065	5.6952	3	0	Plateau	1.106	1.0859	2.6858	4	0	Median	0.89475	0.95183	8.328	5	0	Median	12622000000	5823200000	6798500000	2349100000	1011200000	1337900000	3359500000	1896100000	1463400000	3555700000	1346400000	2209200000	3357400000	1569500000	1787900000	56351	1655	53066	342101;342102;342103;342104;342105;342106;342107;342108;342109;342110;342111;342112;342113;342114;342115	461329;461330;461331;461332;461333;461334;461335;461336;461337;461338;461339;461340;461341;461342;461343;461344;461345;461346;461347;461348;461349;461350;461351	461338			23	
VQSGSESVIQEYVDLR	0	Unmodified	1807.8952	0.89520716	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	75.365	74.555	2	3.0213E-05	64493	160511_QHF_FH_JSI12i_2	100.19	59.598			1.1539	1.2611	17.608	5	2	Median	1.0512	0.93003	NaN	1	1	Median	1.0567	1.2611	NaN	1	0	Median	1.2856	1.2962	11.539	2	1	Median	1.2766	1.4473	NaN	1	0	Median	209090000	103350000	105740000	32855000	18004000	14850000	50506000	23803000	26704000	77013000	37225000	39788000	48717000	24322000	24396000	56352	2636	53067	342116;342117;342118;342119;342120	461352;461353;461354;461355;461356	461352			5	
VQSHQQASEEK	1	Unmodified	1269.5949	0.59494282	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	2	0		3								1	1		1	4.5437	4.0864	2	0.00028024	2024	160511_QHF_FH_JSI9i_2	77.379	44.538			0.81743	0.90418	18.85	3	0	Median	1.2221	1.0716	NaN	1	0	Median	0.59355	0.73549	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81743	0.90418	NaN	1	0	Median	79802000	45005000	34798000	28194000	12644000	15550000	30681000	19912000	10769000	0	0	0	20927000	12449000	8478200	56353	429	53068	342121;342122;342123	461357	461357			1	
VQSKNKYLHSPESRPVTGER	2	2 Acetyl (K)	2395.2244	0.22442065	3818	Q8WYB5	KAT6B	Histone acetyltransferase KAT6B	yes	yes	2	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	42.923	33.718	4	1.8391E-06	18047	160513_QHF_FH_JSI9Kac_6	81.12	67.248			0.98339	0.97758	13.512	4	0	Median	1.0551	0.86773	NaN	1	0	Median	0.81323	0.96193	NaN	1	0	Median	1.2672	1.1995	NaN	1	0	Median	0.91658	0.99348	NaN	1	0	Median	133230000	65317000	67912000	15185000	6775400	8409500	71620000	36643000	34977000	29184000	13198000	15986000	17241000	8700800	8540100	56354	3818	53069	342124;342125;342126;342127	461358;461359;461360;461361;461362	461359	2947;2948		5	
VQSLQATFGTFESILR	0	Unmodified	1795.9468	0.9468488	2252	Q07065	CKAP4	Cytoskeleton-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.77	6.74		3	3						7	3	3	2	5	96.964	92.113	2;3	1.5071E-32	45892	160513_QHF_FH_JSI12Kac_6	204.13	172.66			0.97307	1.0036	23.285	12	5	Median	1.3641	1.144	32.907	3	2	Median	0.82998	0.99898	15.792	3	2	Median	1.0309	0.98102	3.872	2	0	Median	0.96717	1.0155	30.91	4	1	Median	2835100000	1394100000	1441000000	726550000	329920000	396630000	545420000	283260000	262160000	331390000	147160000	184230000	1231700000	633790000	597960000	56355	2252	53070	342128;342129;342130;342131;342132;342133;342134;342135;342136;342137;342138;342139;342140	461363;461364;461365;461366;461367;461368;461369;461370;461371;461372;461373;461374;461375;461376	461373			14	
VQSPDGVK	1	Unmodified	828.43413	0.43413207	3686	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	10.441	10.002	2	0.0042745	7590	160511_QHF_FH_JSI11i_1	69.198	44.108			1.031	1.1152	18.882	8	0	Median	1.6074	1.3324	23.623	2	0	Median	0.87064	1.0607	10.609	2	0	Median	0.93123	0.91813	19.287	2	0	Median	1.031	1.1363	4.1892	2	0	Median	4462800000	1841200000	2621700000	1127400000	400660000	726690000	335070000	183120000	151950000	1286300000	537750000	748550000	1714100000	719640000	994480000	56356	3686	53071	342141;342142;342143;342144;342145;342146;342147;342148	461377;461378;461379;461380;461381	461377			5	
VQSSYLHSLLEMGELLK	1	Unmodified	1946.0183	0.018299186	2592	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	101.38	101.39	3	1.1808E-06	88059	160511_QHF_FH_JSI12i_3	102.58	74.934			0.7742	0.74985	11.203	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86624	0.81166	NaN	1	0	Median	0.69193	0.69274	NaN	1	0	Median	332500000	177300000	155200000	0	0	0	0	0	0	105010000	43495000	61515000	227490000	133810000	93685000	56357	2592	53072	342149;342150	461382	461382			1	
VQSTADIFGDEEGDLFK	1	Unmodified	1869.8632	0.86323833	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.663	84.202	2	5.8469E-08	76686	160511_QHF_FH_JSI11i_1	136.51	112.66			1.0982	1.0906	17.456	4	0	Median	1.0696	0.87502	NaN	1	0	Median	1.1859	1.3402	NaN	1	0	Median	1.1276	1.1075	NaN	1	0	Median	1.064	1.0738	NaN	1	0	Median	116250000	54027000	62223000	15402000	6923300	8479000	30772000	14413000	16359000	41647000	19140000	22507000	28428000	13550000	14878000	56358	3011	53073	342151;342152;342153;342154	461383;461384;461385;461386;461387;461388;461389;461390;461391;461392	461384			10	
VQSTAFFSGDQASTDKEEDYIR	1	Unmodified	2493.1296	0.12957679	2964	Q5TBB1	RNASEH2B	Ribonuclease H2 subunit B	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	1	2	2	59.197	58.618	3	2.7734E-06	52043	160511_QHF_FH_JSI11i_3	70.315	62.361			0.94929	0.95258	10.912	6	0	Median	1.0663	0.89906	NaN	1	0	Median	0.83635	0.9828	NaN	1	0	Median	1.0089	0.97761	17.969	2	0	Median	0.94929	1.0139	13.245	2	0	Median	263420000	135960000	127460000	40001000	17808000	22192000	42642000	19763000	22878000	90907000	50437000	40470000	89871000	47956000	41915000	56359	2964	53074	342155;342156;342157;342158;342159;342160	461393;461394;461395;461396;461397;461398	461393			6	
VQSVEQIR	0	Unmodified	957.52434	0.52434406	1882;2395	P56545;Q13363	CTBP2;CTBP1	C-terminal-binding protein 2;C-terminal-binding protein 1	no	no	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	22.188	17.775	2	0.043667	11441	160513_QHF_FH_JSI11Kac_4	54.549	12.44			0.89703	0.94391	33.839	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74918	0.74305	NaN	1	1	Median	1.0741	1.1991	NaN	1	1	Median	129420000	58409000	71011000	0	0	0	0	0	0	8060000	4081300	3978700	121360000	54328000	67033000	56360	1882;2395	53075	342161;342162	461399;461400	461400			2	
VQSYFDGIK	1	Unmodified	1055.5288	0.52876073	4685	Q9H300	PARL	Presenilins-associated rhomboid-like protein, mitochondrial;P-beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.002	44.61	2	0.022082	38176	160511_QHF_FH_JSI12i_2	43.808	18.071			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56361	4685	53076	342163	461401	461401			1	
VQSYLENPTSYHLQQSQHQK	1	Unmodified	2414.1615	0.16148604	1161	P19484	TFEB	Transcription factor EB	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		39.872	39.872	4	0.0093948	35020	160511_QHF_FH_JSI11i_3	41.257	37.229			0.85923	0.78701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85923	0.78701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51582000	28295000	23287000	0	0	0	0	0	0	51582000	28295000	23287000	0	0	0	56362	1161	53077	342164	461402	461402			0	
VQTANEVK	1	Unmodified	887.47125	0.47124585	1400	P33176	KIF5B	Kinesin-1 heavy chain	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	5.8	5.88	3					2				1		3	1	8.3243	4.5235	2	0.0053411	5052	160511_QHF_FH_JSI11i_1	63.48	20.233			1.4236	1.1251	8.5045	4	2	Linear	1.5372	1.2706	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1193	1.0992	7.4173	2	1	Median	0.99579	1.0928	NaN	1	0	Median	853550000	358750000	494800000	486340000	186790000	299560000	0	0	0	359730000	168460000	191270000	7483200	3502600	3980600	56363	1400	53078	342165;342166;342167;342168;342169	461403;461404;461405;461406	461404			4	
VQTAVTMGK	1	Unmodified	933.49535	0.49535211	3240	Q7LBR1	CHMP1B	Charged multivesicular body protein 1b	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1									1	1	2	20.655	20.142	2	0.0026916	17336	160511_QHF_FH_JSI11i_1	73.248	30.182			0.47417	0.50706	80.831	4	4	Median	NaN	NaN	NaN	0	0	Median	0.46203	0.55321	NaN	1	1	Median	0.48663	0.46476	NaN	1	1	Median	0.4055	0.42611	138.37	2	2	Median	426780000	244560000	182220000	0	0	0	128900000	74652000	54250000	153120000	89903000	63214000	144760000	80007000	64756000	56364	3240	53079	342170;342171;342172;342173	461407;461408;461409;461410	461407			4	
VQTAVTMK	1	Unmodified	876.47389	0.47388839	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.4	0.49	3	2								2	1	2		18.439	17.991	2	0.011304	15301	160511_QHF_FH_JSI9i_2	53.968	27.859			1.0944	1.1495	27.856	4	0	Median	1.4076	1.1588	NaN	1	0	Median	0.95768	1.1402	NaN	1	0	Median	0.92069	0.9112	42.271	2	0	Median	NaN	NaN	NaN	0	0	Median	468710000	258730000	209970000	121770000	55130000	66638000	181790000	102810000	78982000	165150000	100790000	64354000	0	0	0	56365	4873	53080	342174;342175;342176;342177;342178	461411;461412	461411			2	
VQTERPQPQTLQLDFLMK	1	Unmodified	2171.1409	0.14087394	124	O00399	DCTN6	Dynactin subunit 6	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			81.039	79.721	3	0.0044851	66835	160511_QHF_FH_JSI10i_3	42.382	33.098			0.83884	0.95776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83884	0.95776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41202000	22584000	18619000	0	0	0	41202000	22584000	18619000	0	0	0	0	0	0	56366	124	53081	342179	461413;461414	461413			2	
VQTESSTGSVGSNR	0	Unmodified	1407.659	0.65899964	4387	Q9BRX2	PELO	Protein pelota homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.2581	8.8926	2	8.5084E-07	6679	160511_QHF_FH_JSI10i_1	136.7	113.27			0.81245	0.80828	16.714	4	0	Median	1.0074	0.8251	NaN	1	0	Median	0.82348	0.97028	NaN	1	0	Median	0.80156	0.79181	NaN	1	0	Median	0.62509	0.64632	NaN	1	0	Median	555170000	295840000	259330000	106100000	50446000	55659000	142710000	68845000	73869000	136100000	70326000	65770000	170260000	106220000	64036000	56367	4387	53082	342180;342181;342182;342183	461415;461416;461417;461418;461419;461420;461421;461422	461420			8	
VQTEVLQK	1	Unmodified	943.53385	0.53384611	4322	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.143	20.622	2	0.0030848	17780	160511_QHF_FH_JSI11i_1	75.213	16.295			0.9039	0.91741	9.8177	4	0	Median	1.0358	0.82804	NaN	1	0	Median	0.87652	1.0455	NaN	1	0	Median	0.90602	0.89231	NaN	1	0	Median	0.9018	0.94321	NaN	1	0	Median	922910000	450510000	472400000	245900000	106760000	139130000	131840000	61743000	70099000	234350000	103640000	130710000	310820000	178360000	132460000	56368	4322	53083	342184;342185;342186;342187	461423;461424;461425	461423			3	
VQTFPFLGR	0	Unmodified	1063.5815	0.581465	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3							1	1	1	1	70.309	69.651	2	0.00816	58314	160511_QHF_FH_JSI10i_3	60.436	33.182			0.96641	0.88402	12.194	4	0	Linear	1.2737	1.1153	NaN	1	0	Median	0.94468	1.0933	NaN	1	0	Median	0.98864	0.9258	NaN	1	0	Median	0.85995	0.8717	NaN	1	0	Median	404470000	220830000	183640000	32236000	18618000	13619000	98532000	53376000	45157000	104910000	53553000	51359000	168790000	95284000	73505000	56369	1307	53084	342188;342189;342190;342191	461426;461427;461428;461429;461430;461431	461428			6	
VQTFSIHFGFK	1	Unmodified	1309.6819	0.68190733	523	O75419	CDC45	Cell division control protein 45 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	3	1	2	74.183	69.75	3	1.1904E-07	36376	160513_QHF_FH_JSI9Kac_6	105.65	80.175			0.92512	0.89237	20.443	9	5	Median	0.92512	0.79661	13.344	3	2	Median	0.74363	0.89237	16.938	3	2	Median	1.104	1.0802	NaN	1	0	Median	1.0632	1.1347	12.499	2	1	Median	529760000	267240000	262520000	154840000	80970000	73868000	180720000	100060000	80664000	89422000	40791000	48632000	104780000	45423000	59360000	56370	523	53085	342192;342193;342194;342195;342196;342197;342198;342199;342200	461432;461433;461434;461435;461436;461437;461438;461439;461440;461441;461442;461443;461444	461438			13	
VQTGEEGMPLSTIR	0	Unmodified	1516.7555	0.75554256	2150	Q00534	CDK6	Cyclin-dependent kinase 6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		50.958	50.543	2	0.0065502	45754	160511_QHF_FH_JSI11i_1	61.344	42.672			1.7472	1.6852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7472	1.6852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25910000	9509800	16400000	0	0	0	0	0	0	25910000	9509800	16400000	0	0	0	56371	2150	53086	342201	461445	461445			1	
VQTHLENPTKYHIQQAQR	1	Acetyl (K)	2232.14	0.13996274	465	O75030	MITF	Microphthalmia-associated transcription factor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	46.499	37.203	3;4	1.5498E-05	20313	160513_QHF_FH_JSI11Kac_6	81.317	68.28			1.1107	1.1223	67.535	6	1	Median	NaN	NaN	NaN	0	0	Median	0.38899	0.45662	104.34	2	1	Median	1.1526	1.1223	4.6691	2	0	Median	1.117	1.2217	0.93212	2	0	Median	87033000	49751000	37282000	0	0	0	36250000	25701000	10548000	29092000	14235000	14856000	21692000	9813900	11878000	56372	465	53087	342202;342203;342204;342205;342206;342207	461446;461447;461448;461449;461450;461451	461447	238		6	
VQTLEELEELGK	1	Unmodified	1386.7242	0.72422566	4472;2961	Q5TAP6;Q9BVJ6	UTP14C;UTP14A	U3 small nucleolar RNA-associated protein 14 homolog C;U3 small nucleolar RNA-associated protein 14 homolog A	no	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		72.149	71.868	2	0.00088026	65168	160511_QHF_FH_JSI10i_1	77.744	52.906			1.2446	1.3	79.427	2	2	Median	NaN	NaN	NaN	0	0	Median	0.65146	0.74138	NaN	1	1	Median	2.3778	2.2796	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44605000	24590000	20015000	0	0	0	21966000	15189000	6776700	22639000	9401000	13238000	0	0	0	56373	2961;4472	53088	342208;342209	461452;461453	461453			2	
VQTLQFHPFEAQTLISGSYDK	1	Unmodified	2408.2012	0.20122559	2450	Q13610	PWP1	Periodic tryptophan protein 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	87.13	86.576	3	3.6981E-18	75061	160511_QHF_FH_JSI12i_3	147	138.5			0.95683	0.981	8.0688	7	0	Median	1.1039	0.92649	NaN	1	0	Median	0.83926	0.99701	13.914	2	0	Median	1.0126	0.98223	0.17775	2	0	Median	0.92368	0.98353	12.623	2	0	Median	1197000000	589240000	607730000	74907000	38961000	35947000	149550000	88059000	61494000	438930000	198850000	240080000	533580000	263370000	270210000	56374	2450	53089	342210;342211;342212;342213;342214;342215;342216	461454;461455;461456;461457;461458;461459;461460;461461;461462;461463;461464	461464			11	
VQTLSNQPLLK	1	Unmodified	1239.7187	0.71868677	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	1	2	3	45.103	44.223	2	0.0035734	40313	160511_QHF_FH_JSI12i_1	55.649	44.7			1.0417	1.0291	26.015	7	3	Median	1.0997	0.91966	15.905	2	1	Median	0.78841	0.97567	NaN	1	0	Median	0.81294	0.80962	36.164	2	1	Median	1.1824	1.2599	20.675	2	1	Median	671070000	322680000	348390000	153980000	62480000	91499000	81055000	39715000	41340000	244520000	130260000	114260000	191510000	90218000	101290000	56375	3499	53090	342217;342218;342219;342220;342221;342222;342223;342224	461465;461466;461467;461468;461469;461470;461471;461472;461473;461474	461468			10	
VQTPEVDVK	1	Unmodified	1013.5393	0.53932542	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	32.128	31.552	2	0.0032457	28004	160511_QHF_FH_JSI10i_1	60.019	28.73			0.98971	1.0568	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98971	1.0568	NaN	1	1	Median	352230000	205360000	146870000	0	0	0	0	0	0	0	0	0	352230000	205360000	146870000	56376	2286	53091	342225;342226;342227;342228;342229	461475;461476;461477;461478;461479	461478			5	
VQVALEELQDLK	1	Unmodified	1383.7609	0.76094551	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.58	0.64	6	5	1							3	3	4	2	76.81	76.229	2	1.6141E-05	67253	160511_QHF_FH_JSI9i_2	113.22	82.66			1.1122	1.3591	53.782	11	10	Median	0.87724	0.72425	12.779	2	1	Median	1.1122	1.3591	43.692	3	3	Median	1.2197	1.2054	77.155	4	4	Median	1.5557	1.6644	12.084	2	2	Median	911220000	443490000	467730000	123200000	56948000	66253000	314660000	166190000	148470000	314290000	146410000	167880000	159070000	73949000	85125000	56377	2517	53092	342230;342231;342232;342233;342234;342235;342236;342237;342238;342239;342240;342241	461480;461481;461482;461483;461484;461485;461486;461487;461488;461489;461490;461491;461492	461488			13	
VQVALGNISSK	1	Unmodified	1114.6346	0.63462279	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4									3	2	2	45.934	45.176	2	0.0017159	40541	160511_QHF_FH_JSI10i_1	61.56	39.068			0.95525	1.0783	30.321	7	2	Median	NaN	NaN	NaN	0	0	Median	0.94109	1.0956	44.355	3	2	Median	1.0327	1.0129	8.8494	2	0	Median	0.91756	0.99754	19.94	2	0	Median	337680000	184380000	153300000	0	0	0	128980000	66268000	62707000	118320000	62625000	55691000	90386000	55487000	34899000	56378	586	53093	342242;342243;342244;342245;342246;342247;342248	461493;461494;461495;461496;461497;461498;461499	461495			7	
VQVEAIEGGALQK	1	Unmodified	1340.73	0.72997974	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			49.313	48.893	3	0.0036831	44044	160511_QHF_FH_JSI10i_1	50.897	33.529			1.5054	1.6127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5054	1.6127	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9756500	2447400	7309200	0	0	0	9756500	2447400	7309200	0	0	0	0	0	0	56379	4651	53094	342249	461500	461500			1	
VQVEYKGETK	2	Unmodified	1179.6136	0.61355299	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.82	5.77	4	8	8				2	5	1	6	7	8	7	17.694	14.789	2;3	2.2815E-05	11760	160511_QHF_FH_JSI12i_3	110.66	97.308			0.92269	1.0032	21.242	28	5	Median	1.2575	1.0791	16.175	6	1	Median	0.82876	0.98327	15.009	7	1	Median	1.1617	1.1104	31.022	8	2	Median	0.89011	0.96747	18.294	7	1	Median	16059000000	7846500000	8212900000	1421000000	607470000	813490000	2634300000	1450400000	1183900000	4599000000	2139700000	2459300000	7405200000	3649000000	3756100000	56380	985;1827	53095	342250;342251;342252;342253;342254;342255;342256;342257;342258;342259;342260;342261;342262;342263;342264;342265;342266;342267;342268;342269;342270;342271;342272;342273;342274;342275;342276;342277	461501;461502;461503;461504;461505;461506;461507;461508;461509;461510;461511;461512;461513;461514;461515;461516;461517;461518;461519;461520;461521;461522;461523;461524;461525;461526;461527;461528;461529;461530;461531;461532;461533;461534;461535;461536;461537;461538;461539;461540;461541;461542	461541			42	
VQVEYKGETK	2	Acetyl (K)	1221.6241	0.62411768	985;1827	P11142;P54652	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.5	0.5					3	3					2	2	2	37.143	28.415	2	0.00031562	16454	160513_QHF_FH_JSI11Kac_3	94.297	73.967			0.82427	0.92565	42.735	6	0	Median	NaN	NaN	NaN	0	0	Median	1.035	1.247	8.4844	2	0	Median	0.52299	0.50876	1.0147	2	0	Median	0.85476	0.92565	26.824	2	0	Median	243680000	145640000	98037000	0	0	0	69067000	40461000	28607000	92734000	63975000	28759000	81878000	41207000	40671000	56381	985;1827	53095	342278;342279;342280;342281;342282;342283	461543;461544;461545;461546;461547;461548;461549;461550	461544	784		8	
VQVLSFLWTHTQNK	1	Unmodified	1699.9046	0.90459006	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	3	2	1	1	82.687	76.05	2;3	6.5712E-68	41716	160513_QHF_FH_JSI10Kac_6	267.75	214.96			0.98965	1.0774	24.536	6	1	Median	1.0363	0.88105	26.674	2	0	Median	0.9531	1.111	4.5936	2	0	Median	1.657	1.5771	NaN	1	1	Median	1.0035	1.0793	NaN	1	0	Median	2333800000	1044800000	1289000000	516050000	229610000	286440000	1224000000	594460000	629560000	444230000	152820000	291410000	149540000	67956000	81585000	56382	2993	53096	342284;342285;342286;342287;342288;342289;342290	461551;461552;461553;461554;461555;461556;461557;461558;461559;461560;461561;461562	461561			12	
VQVMHSSIVAHQNFGLK	1	Unmodified	1893.9883	0.98833646	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			51.375	49.794	4	0.00063422	40711	160511_QHF_FH_JSI9i_3	61.641	44.422			1.4477	1.4191	4.4866	2	2	Median	1.7767	1.4648	NaN	1	1	Median	1.1796	1.3747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69845000	32339000	37506000	41664000	20820000	20844000	28181000	11520000	16661000	0	0	0	0	0	0	56383	3430	53097	342291;342292	461563;461564	461564			2	
VQVMVPEAETR	0	Unmodified	1257.6387	0.63872189	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0				By MS/MS	1	0	2												2	43.737	43.101	2	6.1847E-05	39264	160511_QHF_FH_JSI12i_1	102.06	64.87			1.264	1.3156	0.94487	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.264	1.3156	0.94487	2	2	Median	414600000	210980000	203630000	0	0	0	0	0	0	0	0	0	414600000	210980000	203630000	56384	2638;2895	53098	342293;342294	461565;461566	461566			2	
VQVPNMQDK	1	Unmodified	1057.5226	0.5226295	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.321	31.086	2	0.019265	27807	160511_QHF_FH_JSI11i_1	50.805	36.135			0.54614	0.53694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54614	0.53694	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	242680000	156380000	86300000	0	0	0	0	0	0	242680000	156380000	86300000	0	0	0	56385	2676	53099	342295	461567	461567			1	
VQVQDNEGCPVEALVK	1	Unmodified	1783.8774	0.87744861	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	60.088	59.403	2;3	1.3647E-11	52647	160511_QHF_FH_JSI9i_1	155.02	131.27			1.0763	0.90396	21.524	6	1	Median	1.0962	0.90396	0.19038	2	0	Median	1.0693	1.2409	NaN	1	1	Median	0.82834	0.80991	1.1371	2	0	Median	1.2522	1.323	NaN	1	0	Median	853040000	421370000	431670000	201910000	98686000	103230000	162800000	74862000	87941000	276730000	159690000	117040000	211590000	88137000	123460000	56386	1192	53100	342296;342297;342298;342299;342300;342301	461568;461569;461570;461571;461572;461573;461574;461575;461576	461574			9	
VQVQVVER	0	Unmodified	955.54508	0.5450795	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	8.5194	8.2724	3	0.042566	5989	160511_QHF_FH_JSI9i_3	24.923	0			17.908	16.305	83.987	2	2	Median	11.405	9.0033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	28.119	29.528	NaN	1	1	Median	3241600000	201600000	3040000000	984390000	65157000	919230000	0	0	0	0	0	0	2257200000	136440000	2120800000	56387	590	53101	342302;342303	461577;461578	461577			2	
VQVSLDEHFSK	1	Unmodified	1287.6459	0.64591575	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	43.064	42.832	3	0.050143	36541	160511_QHF_FH_JSI12i_3	25.448	17.724			0.88771	0.92947	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88771	0.92947	NaN	1	1	Median	14029000	4610100	9419100	0	0	0	0	0	0	0	0	0	14029000	4610100	9419100	56388	2947	53102	342304	461579	461579			1	
VQVSVLK	1	Unmodified	771.48544	0.48543935	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.31	5	5	4				3	5	1	7	5	5	6	37.962	33.348	2	0.0055575	29067	160511_QHF_FH_JSI10i_2	94.407	39.882			1.0306	1.0665	55.552	22	1	Median	1.3434	1.0657	69.711	7	1	Median	0.99714	1.1961	16.698	5	0	Median	0.98431	0.98851	21.542	4	0	Median	1.0472	1.0963	79.287	6	0	Median	19666000000	8970700000	10696000000	3901300000	1565200000	2336100000	5002000000	2205200000	2796800000	5684700000	2512900000	3171900000	5078300000	2687500000	2390800000	56389	779	53103	342305;342306;342307;342308;342309;342310;342311;342312;342313;342314;342315;342316;342317;342318;342319;342320;342321;342322;342323;342324;342325;342326;342327	461580;461581;461582;461583;461584;461585;461586;461587;461588;461589;461590;461591;461592;461593;461594;461595;461596;461597;461598;461599;461600;461601;461602;461603;461604;461605;461606;461607;461608;461609;461610;461611;461612;461613;461614;461615;461616	461610			37	
VQVSYKGETK	2	Unmodified	1137.603	0.60298831	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.6	0.49		2	3							1	2		2	15.116	14.668	2;3	0.00029673	11477	160511_QHF_FH_JSI12i_3	81.865	64.839			1.0746	1.2581	30.227	5	5	Median	1.4761	1.2581	NaN	1	1	Median	1.2702	1.5219	20.416	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86248	0.87412	10.146	2	2	Median	2502400000	1027800000	1474600000	206650000	89148000	117510000	355820000	159340000	196480000	0	0	0	1939900000	779330000	1160600000	56390	954	53104	342328;342329;342330;342331;342332	461617;461618;461619;461620;461621	461620			5	
VQVSYKGETK	2	Acetyl (K)	1179.6136	0.61355299	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	35.988	26.982	2	4.2105E-06	15275	160513_QHF_FH_JSI10Kac_3	120.09	82.004			0.49489	0.51864	43.767	4	0	Median	NaN	NaN	NaN	0	0	Median	0.64662	0.76876	NaN	1	0	Median	0.35308	0.35008	10.676	2	0	Median	0.64408	0.71247	NaN	1	0	Median	90215000	57579000	32636000	0	0	0	22154000	16529000	5625700	52166000	31851000	20315000	15895000	9199700	6695000	56391	954	53104	342333;342334;342335;342336;342337;342338	461622;461623;461624;461625;461626;461627;461628;461629	461629	723		8	
VQVVDEEGDQQHQEGK	1	Unmodified	1823.8286	0.82858416	2188	Q02447	SP3	Transcription factor Sp3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	16.526	16.25	3	2.1215E-05	13666	160511_QHF_FH_JSI11i_1	85.636	75.168			1.0331	1.0035	26.702	3	1	Median	NaN	NaN	NaN	0	0	Median	0.62778	0.73521	NaN	1	1	Median	1.0331	1.0035	NaN	1	0	Median	1.209	1.2509	NaN	1	0	Median	152720000	72739000	79983000	0	0	0	42017000	24695000	17322000	59287000	29261000	30026000	51419000	18783000	32636000	56392	2188	53105	342339;342340;342341	461630;461631;461632	461631			3	
VQVVGTYR	0	Unmodified	920.50797	0.50796571	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.27	6.3		3	2				1	4	1	3	3	3	2	29.19	23.867	2	0.00063796	20520	160511_QHF_FH_JSI11i_3	101.64	63.405			0.9683	0.95971	12.771	11	0	Median	1.2983	1.1017	14.251	3	0	Median	0.66537	0.81176	12.399	3	0	Plateau	0.93166	0.89212	2.4379	3	0	Median	1.0491	1.1164	0.75841	2	0	Median	1603400000	757210000	846240000	266130000	121810000	144320000	277960000	156430000	121530000	646650000	290970000	355680000	412710000	188010000	224700000	56393	1254	53106	342342;342343;342344;342345;342346;342347;342348;342349;342350;342351;342352	461633;461634;461635;461636;461637;461638;461639;461640;461641;461642;461643;461644;461645;461646;461647	461633			15	
VQVYLHESTQDELARK	1	Unmodified	1914.9799	0.97993984	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.123	36.96	4	0.0592	31385	160511_QHF_FH_JSI12i_3	15.395	3.7523			0.88257	0.93973	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88257	0.93973	NaN	1	0	Median	47399000	25772000	21626000	0	0	0	0	0	0	0	0	0	47399000	25772000	21626000	56394	2453	53107	342353	461648	461648			0	
VQVYQEPNRETR	0	Unmodified	1517.7587	0.7586541	402	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			17.728	16.924	3	0.0059579	14406	160511_QHF_FH_JSI10i_2	35.737	13.539			0.86426	0.89286	4.7283	2	0	Median	1.0486	0.92321	NaN	1	0	Median	0.71231	0.8635	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102280000	55603000	46674000	48565000	22317000	26248000	53711000	33285000	20426000	0	0	0	0	0	0	56395	402	53108	342354;342355	461649	461649			1	
VQYAPERPGPQPTAETTR	0	Unmodified	1996.9967	0.99665254	1657	P49407	ARRB1	Beta-arrestin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			28.625	27.458	3	1.9439E-05	22771	160511_QHF_FH_JSI10i_3	74.786	57.504			1.089	1.0668	21.594	4	1	Linear	1.5728	1.3123	33.995	2	1	Median	0.94085	1.1268	3.3278	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155840000	71095000	84745000	66737000	27535000	39202000	89103000	43560000	45543000	0	0	0	0	0	0	56396	1657	53109	342356;342357;342358;342359	461650;461651;461652;461653	461651			4	
VQYLLLSR	0	Unmodified	990.58622	0.58621603	1716	P50748	KNTC1	Kinetochore-associated protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		16.988	16.988	3	0.035072	14081	160511_QHF_FH_JSI11i_3	27.254	0			4.7692	4.4931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.7692	4.4931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	197920000	16881000	181040000	0	0	0	0	0	0	197920000	16881000	181040000	0	0	0	56397	1716	53110	342360	461654	461654			1	
VQYPDAKPVR	1	Unmodified	1171.635	0.63495714	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		20.264	20.264	3	0.031346	16907	160511_QHF_FH_JSI11i_3	24.957	10.552			0.81397	0.77099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81397	0.77099	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60724000	35162000	25562000	0	0	0	0	0	0	60724000	35162000	25562000	0	0	0	56398	5641	53111	342361	461655	461655			1	
VQYPQSQACK	1	Unmodified	1207.5656	0.56555694	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.697	14.267	2	0.055886	11862	160511_QHF_FH_JSI12i_1	34.387	25.524			1.3538	1.4341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3538	1.4341	NaN	1	0	Median	108700000	49767000	58934000	0	0	0	0	0	0	0	0	0	108700000	49767000	58934000	56399	2517	53112	342362	461656	461656			1	
VQYTETEPYHNYR	0	Unmodified	1698.7638	0.76379906	3341	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	2	1	1	28.187	27.593	3	5.919E-05	23167	160511_QHF_FH_JSI11i_2	77.204	65.765			1.0218	1.1165	16.17	4	1	Linear	1.2461	1.0657	NaN	1	0	Median	0.63781	0.78357	NaN	1	1	Median	0.93883	0.93808	NaN	1	0	Median	1.1121	1.1286	NaN	1	0	Median	213360000	107280000	106080000	55567000	23660000	31906000	48833000	27416000	21417000	45882000	26699000	19182000	63082000	29508000	33574000	56400	3341	53113	342363;342364;342365;342366;342367	461657;461658;461659;461660;461661	461659			5	
VQYTLPDGSTLDVGPAR	0	Unmodified	1787.9054	0.90537792	1524	P42025	ACTR1B	Beta-centractin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	77.675	77.197	2	3.471E-05	70022	160511_QHF_FH_JSI10i_1	112.51	78.128			0.90164	0.86309	13.405	4	4	Median	1.0242	0.85408	NaN	1	1	Median	0.95319	1.1086	NaN	1	1	Median	0.85288	0.82718	NaN	1	1	Median	0.85189	0.87219	NaN	1	1	Median	140280000	83117000	57158000	23329000	15021000	8308100	48578000	29182000	19396000	34989000	20267000	14721000	33380000	18647000	14733000	56401	1524	53114	342368;342369;342370;342371	461662;461663;461664;461665	461664			4	
VQYVIQGYHK	1	Unmodified	1233.6506	0.6506072	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	1	2	2	3	35.758	31.049	2;3	0.00012408	25907	160511_QHF_FH_JSI12i_3	98.392	69.305			1.0908	1.114	26.713	8	5	Median	1.4056	1.2078	NaN	1	0	Median	1.1434	1.3716	0.44222	2	2	Median	0.86817	0.83766	28.88	2	1	Median	0.88938	0.97392	28.413	3	2	Median	651400000	312430000	338960000	30461000	14025000	16436000	59044000	29755000	29289000	230030000	129680000	100350000	331860000	138970000	192890000	56402	5110	53115	342372;342373;342374;342375;342376;342377;342378;342379	461666;461667;461668;461669;461670;461671	461669			6	
VRAEIASK	1	Unmodified	872.50797	0.50796571	2353	Q13123	IK	Protein Red	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		8.9105	8.5172	3	0.034038	6232	160511_QHF_FH_JSI9i_3	27.481	13.324			1.0044	0.95763	25.869	3	1	Median	1.1828	0.95763	NaN	1	0	Median	1.0044	1.1776	NaN	1	1	Median	0.76709	0.70422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	515580000	242750000	272830000	187880000	70594000	117290000	188470000	100060000	88411000	139230000	72098000	67128000	0	0	0	56403	2353	53116	342380;342381;342382	461672;461673	461673			2	
VRAEVEQK	1	Unmodified	957.52434	0.52434406	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		6.6348	6.2879	2	0.013133	4077	160511_QHF_FH_JSI11i_3	83.998	25.017			0.88758	0.94221	7.6881	4	0	Median	0.98996	0.83289	NaN	1	0	Median	0.79116	0.94221	2.085	2	0	Median	1.0425	0.99707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	308590000	170210000	138380000	40578000	22024000	18554000	100800000	59430000	41371000	167210000	88752000	78460000	0	0	0	56404	3438	53117	342383;342384;342385;342386	461674;461675;461676;461677;461678	461675			5	
VRDDVAEYK	1	Unmodified	1093.5404	0.54038805	2479	Q13895	BYSL	Bystin	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	14.288	14.325	2	0.00018852	11110	160511_QHF_FH_JSI12i_3	103.55	67.151			1.1219	1.0891	24.017	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0204	0.91902	NaN	1	0	Median	1.2334	1.2907	NaN	1	0	Median	80632000	35932000	44700000	0	0	0	0	0	0	33720000	14225000	19495000	46912000	21707000	25205000	56405	2479	53118	342387;342388;342389	461679;461680;461681;461682	461682			4	
VRDLLWAK	1	Unmodified	999.58655	0.58655038	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		40.899	40.899	3	0.00835	36017	160511_QHF_FH_JSI11i_3	46.462	39.242			1.0964	1.0353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0964	1.0353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	84600000	34913000	49687000	0	0	0	0	0	0	84600000	34913000	49687000	0	0	0	56406	3660	53119	342390	461683	461683			1	
VRDLTIQK	1	Unmodified	971.57638	0.57637963	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	3	2	1	17.71	16.978	2;3	9.66E-05	13711	160511_QHF_FH_JSI9i_3	118.18	79.155			0.9154	0.93936	15.031	9	0	Median	1.1101	0.90607	14.922	3	0	Median	0.84195	0.94366	13.152	3	0	Median	1.1278	1.0904	4.6623	2	0	Median	0.79881	0.79875	NaN	1	0	Median	2030400000	916990000	1113400000	584570000	230810000	353760000	725360000	411120000	314250000	658610000	250080000	408520000	61880000	24985000	36896000	56407	1064	53120	342391;342392;342393;342394;342395;342396;342397;342398;342399	461684;461685;461686;461687;461688;461689	461687			6	
VRDVLDFYNVPIQDR	0	Unmodified	1847.953	0.95299681	3549	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		2	4							2	3	1		75.761	74.86	3	0.00016008	62966	160511_QHF_FH_JSI10i_3	68.944	63.515			1.2847	1.0229	35.147	4	1	Linear	2.5857	2.1753	NaN	1	0	Median	1.2393	1.4795	30.913	2	1	Median	1.1069	1.0364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	240890000	103870000	137020000	19163000	4566400	14597000	126340000	58321000	68021000	95385000	40982000	54403000	0	0	0	56408	3549	53121	342400;342401;342402;342403;342404;342405	461690;461691;461692;461693;461694;461695;461696;461697;461698;461699;461700	461693			11	
VREADLVIFQFPLYWFSVPAILK	1	Unmodified	2750.52	0.51998095	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									4	1	2	1		101.18	93.669	2;3	3.3423E-124	56229	160513_QHF_FH_JSI10Kac_6	255.27	216.9			1.0795	1.139	8.1906	4	0	Median	1.1571	0.99238	NaN	1	0	Median	0.981	1.1642	4.3716	2	0	Median	1.1848	1.1493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1967000000	939120000	1027800000	540800000	258850000	281950000	1357600000	649020000	708600000	68535000	31244000	37291000	0	0	0	56409	1090	53122	342406;342407;342408;342409	461701;461702;461703;461704	461704			4	
VREAFQPQEPDFPPPPPDLEQLR	0	Unmodified	2701.35	0.35001509	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.57	0.495		3	4							2	5			83.095	82.035	3	9.6568E-06	68928	160511_QHF_FH_JSI10i_3	59.814	52.939			1.0542	1.231	10.459	5	2	Median	1.5113	1.2834	NaN	1	1	Median	1.0201	1.1865	10.97	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	222860000	109960000	112900000	59743000	17284000	42459000	163120000	92677000	70438000	0	0	0	0	0	0	56410	1139	53123	342410;342411;342412;342413;342414;342415;342416	461705;461706;461707;461708;461709;461710;461711;461712	461706			8	
VREATNDDPWGPSGQLMGEIAK	1	Unmodified	2370.1274	0.12740872	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		72.763	72.039	3	8.4891E-07	60412	160511_QHF_FH_JSI10i_3	78.324	75.037			1.2596	1.3156	19.773	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2976	1.513	NaN	1	0	Median	1.2227	1.1439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107460000	52370000	55085000	0	0	0	28169000	13958000	14211000	79286000	38412000	40874000	0	0	0	56411	2558	53124	342417;342418	461713;461714;461715	461714			2	
VREEAER	0	Unmodified	887.44609	0.44609374	2521	Q14244	MAP7	Ensconsin	yes	no	0	0	0	1	By MS/MS	By MS/MS		By matching	2.4	0.49		3	2							1	3		1	1.2519	0.96888	3	0.0084246	710	160511_QHF_FH_JSI10i_2	54.157	22.868			1.1313	1.189	42.766	5	2	Median	2.8269	2.4676	NaN	1	1	Median	0.9558	1.1178	30.878	3	1	Median	NaN	NaN	NaN	0	0	Median	1.1313	1.189	NaN	1	0	Median	146740000	72173000	74563000	27296000	7997300	19299000	115830000	62188000	53641000	0	0	0	3611300	1988200	1623200	56412	2521	53125	342419;342420;342421;342422;342423	461716;461717;461718;461719;461720	461720			5	
VREEEIEVDSR	0	Unmodified	1359.663	0.66302238	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	20.622	20.622	2;3	5.0283E-17	17412	160511_QHF_FH_JSI11i_3	155.99	111.64			0.78101	0.76871	23.941	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9269	0.8815	7.1186	2	0	Median	0.60735	0.615	19.308	2	0	Median	1050100000	607680000	442410000	0	0	0	0	0	0	634740000	330500000	304230000	415360000	277180000	138180000	56413	2586	53126	342424;342425;342426;342427	461721;461722;461723;461724;461725	461723			5	
VREEFKELK	2	Acetyl (K)	1218.6608	0.66083754	791	P02545	LMNA	Prelamin-A/C;Lamin-A/C	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	1	2	2	1	41.53	32.066	3	0.0019818	17599	160513_QHF_FH_JSI11Kac_6	83.397	50.168			0.68637	0.70855	31.737	6	1	Median	1.2564	1.0733	NaN	1	0	Median	0.63123	0.7438	41.835	2	0	Median	0.57898	0.55595	7.376	2	1	Median	0.78842	0.85714	NaN	1	0	Median	191240000	104280000	86958000	20889000	9647800	11241000	55619000	29553000	26066000	89005000	54904000	34100000	25725000	10174000	15551000	56414	791	53127	342428;342429;342430;342431;342432;342433	461726;461727;461728;461729;461730;461731;461732;461733;461734	461727	419		8	
VREEILAK	1	Unmodified	956.56548	0.56548059	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	2	2	18.278	17.903	2;3	0.0030189	14973	160511_QHF_FH_JSI11i_3	54.982	23.908			0.97846	1.0338	25.651	6	0	Median	1.5218	1.2366	NaN	1	0	Median	0.76262	0.92575	NaN	1	0	Median	1.268	1.18	3.1073	2	0	Median	0.70241	0.71636	7.9661	2	0	Median	779070000	423660000	355410000	26737000	9438100	17299000	87691000	55216000	32476000	502860000	261050000	241810000	161780000	97953000	63826000	56415	4628	53128	342434;342435;342436;342437;342438;342439	461735;461736;461737;461738;461739;461740	461736			6	
VREELIDK	1	Unmodified	1000.5553	0.55530983	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	19.073	18.632	2;3	0.001142	15370	160511_QHF_FH_JSI11i_3	70.552	36.346			0.85582	0.80252	42.006	7	2	Median	2.5371	2.1916	NaN	1	1	Median	0.85582	1.0774	NaN	1	0	Median	0.8654	0.70017	13.18	3	0	Plateau	0.66293	0.69772	11.433	2	1	Median	2143600000	1127300000	1016300000	266190000	107570000	158620000	304040000	148920000	155110000	1134700000	539070000	595630000	438710000	331790000	106920000	56416	1520	53129	342440;342441;342442;342443;342444;342445;342446	461741;461742;461743;461744;461745;461746;461747;461748;461749	461741			9	
VREEVPLELVEAHVK	1	Unmodified	1745.9676	0.96758424	3907	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	1	4	1	64.172	63.802	3;4	1.7488E-05	56386	160511_QHF_FH_JSI11i_3	116.35	97.983			1.0174	0.96763	12.988	7	2	Median	1.0294	0.88032	NaN	1	0	Median	0.79767	0.99055	NaN	1	0	Median	1.0773	1.0193	13.155	4	2	Median	0.80048	0.80354	NaN	1	0	Median	734700000	383940000	350760000	37795000	19820000	17975000	60116000	33249000	26866000	548140000	271020000	277120000	88642000	59846000	28795000	56417	3907	53130	342447;342448;342449;342450;342451;342452;342453	461750;461751;461752;461753;461754;461755;461756;461757;461758;461759	461752			10	
VREFNFEK	1	Unmodified	1067.54	0.53999412	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS		3	0			5							2	2	1		29.23	28.141	2;3	0.00071399	22840	160511_QHF_FH_JSI9i_3	78.098	56.65			1.0023	0.94185	7.6061	5	0	Median	1.0906	0.88696	0.3411	2	0	Median	0.87361	1.0032	8.9224	2	0	Median	1.0023	0.94599	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	645180000	348450000	296740000	256350000	124990000	131360000	188460000	100910000	87548000	200370000	122550000	77825000	0	0	0	56418	2087	53131	342454;342455;342456;342457;342458	461760;461761;461762;461763	461762			4	
VREFSITDVVPYPISLR	0	Unmodified	1990.0888	0.088762013	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1		By MS/MS			2.67	0.471		1	2								3			100.07	99.925	3	0.0018608	88092	160511_QHF_FH_JSI10i_2	50.079	45.462			1.0199	1.1563	15.51	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0199	1.1563	15.51	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52146000	23095000	29050000	0	0	0	52146000	23095000	29050000	0	0	0	0	0	0	56419	1417	53132	342459;342460;342461	461764;461765;461766;461767	461766			4	
VREFTMAEIEHFVDPSEK	1	Unmodified	2163.0307	0.030654786	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.73	0.445		6	16							6	11	5		87.15	86.401	3;4	2.5598E-07	71873	160511_QHF_FH_JSI10i_3	108.71	99.771			0.98775	1.0625	27.925	21	6	Median	1.2603	1.1031	34.963	6	4	Median	0.92486	1.0795	12.624	11	2	Median	1.0439	0.97671	42.388	4	0	Median	NaN	NaN	NaN	0	0	Median	639340000	313900000	325450000	79946000	33232000	46714000	286040000	147480000	138560000	273360000	133180000	140180000	0	0	0	56420	1519	53133	342462;342463;342464;342465;342466;342467;342468;342469;342470;342471;342472;342473;342474;342475;342476;342477;342478;342479;342480;342481;342482;342483	461768;461769;461770;461771;461772;461773;461774;461775;461776;461777;461778;461779;461780;461781;461782;461783;461784;461785;461786;461787;461788;461789;461790;461791;461792	461775			25	
VREIIQK	1	Unmodified	884.54435	0.54435122	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.83	0.373		1	5							3	2	1		12.566	11.928	3	0.0017962	9441	160511_QHF_FH_JSI10i_3	100.45	22.777			0.52781	0.50837	78.285	6	5	Median	0.70768	0.6134	92.312	3	2	Median	0.72641	0.83483	96.709	2	2	Median	0.39366	0.37975	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3560400000	1908700000	1651700000	1836100000	830330000	1005800000	1094400000	649230000	445130000	629880000	429110000	200770000	0	0	0	56421	1039	53134	342484;342485;342486;342487;342488;342489	461793;461794;461795;461796;461797;461798	461795			6	
VREIQEK	1	Unmodified	900.50288	0.50288033	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			6.003	5.5068	3	0.025231	3579	160511_QHF_FH_JSI10i_3	34.932	2.0915			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56422	409	53135	342490	461799	461799			1	
VRELEDMYLK	1	Unmodified	1294.6591	0.65912298	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	45.19	44.951	3	4.8168E-06	38389	160511_QHF_FH_JSI12i_3	91.937	74.995			1.4316	1.4726	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4316	1.4726	NaN	1	0	Median	181400000	83223000	98172000	0	0	0	0	0	0	0	0	0	181400000	83223000	98172000	56423	5289	53136	342491;342492	461800;461801;461802	461802			3	
VRELELVYAR	0	Unmodified	1246.7034	0.70337105	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.5	6.5			1						1	1	1			49.979	44.882	3	0.00065246	24592	160513_QHF_FH_JSI10Kac_6	69.979	49.552			1.3521	1.327	10.338	2	1	Median	1.7621	1.4277	NaN	1	1	Median	1.0375	1.2335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	76465000	30701000	45763000	57155000	20509000	36646000	19310000	10193000	9117400	0	0	0	0	0	0	56424	2573	53137	342493;342494	461803;461804;461805	461804			3	
VRELFVQSEIFPLETPAFAIK	1	Unmodified	2433.3308	0.3307832	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		101.4	101.33	3	7.203E-05	83895	160511_QHF_FH_JSI10i_3	62.099	58.504			0.68034	0.70166	3.3972	2	2	Median	NaN	NaN	NaN	0	0	Median	0.60115	0.68501	NaN	1	1	Median	0.76996	0.71872	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	366180000	196320000	169860000	0	0	0	148610000	85623000	62992000	217560000	110700000	106860000	0	0	0	56425	1693	53138	342495;342496	461806;461807	461807			2	
VRELISDNQYR	0	Unmodified	1391.7157	0.71572665	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			27.498	26.149	2;3	4.5401E-06	21232	160511_QHF_FH_JSI9i_3	107.97	98.534			1.1961	0.9594	8.7	3	1	Plateau	1.2854	1.0444	12.008	2	0	Median	0.91545	1.0793	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	290870000	153600000	137280000	194860000	103090000	91774000	96015000	50511000	45503000	0	0	0	0	0	0	56426	1254	53139	342497;342498;342499	461808;461809;461810;461811	461810			4	
VRELLEQISAFDNVPR	0	Unmodified	1885.0058	0.005760665	5095	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.4	0.49		3	2							3	2			81.198	80.197	3	8.2682E-05	71325	160511_QHF_FH_JSI10i_2	56.851	39.107			2.3558	2.2869	104.39	4	4	Median	4.9963	4.2716	127.5	3	3	Plateau	1.7063	1.9249	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68385000	23935000	44451000	48437000	16056000	32381000	19949000	7878900	12070000	0	0	0	0	0	0	56427	5095	53140	342500;342501;342502;342503;342504	461812;461813;461814;461815;461816	461816			5	
VREMEEEAEK	1	Unmodified	1248.5656	0.56561652	3315	Q86U42	PABPN1	Polyadenylate-binding protein 2	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			9.9261	9.4267	3	0.004366	7364	160511_QHF_FH_JSI10i_2	46.378	30.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56428	3315	53141	342505	461817	461817			1	
VREMFMK	1	Unmodified	939.46703	0.46702887	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		24.165	23.527	3	0.009219	19705	160511_QHF_FH_JSI11i_3	55.676	29.074			0.79256	0.83246	87.244	2	2	Median	NaN	NaN	NaN	0	0	Median	0.38646	0.44921	NaN	1	1	Median	1.6254	1.5427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	387560000	238710000	148850000	0	0	0	183200000	131090000	52102000	204360000	107610000	96751000	0	0	0	56429	1883	53142	342506;342507	461818;461819	461818			2	
VRENNYTYEFDFSK	1	Unmodified	1810.8162	0.81622856	2807	Q32P41	TRMT5	tRNA (guanine(37)-N1)-methyltransferase	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		55.208	53.656	3	0.00074706	44858	160511_QHF_FH_JSI10i_3	60.474	53.435			1.2716	1.4969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2716	1.4969	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16780000	6670400	10110000	0	0	0	16780000	6670400	10110000	0	0	0	0	0	0	56430	2807	53143	342508;342509	461820;461821;461822	461821			3	
VREQIDTLFK	1	Unmodified	1247.6874	0.68738664	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		47.19	46.407	2	0.012865	38905	160511_QHF_FH_JSI10i_3	63.216	34.055			0.93028	0.98466	15.823	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93324	1.1012	NaN	1	0	Median	0.92734	0.88043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46094000	22392000	23702000	0	0	0	15241000	8120200	7120900	30853000	14272000	16581000	0	0	0	56431	2213	53144	342510;342511	461823;461824;461825	461825			3	
VREQLGPVTQEFWDNLEK	1	Unmodified	2187.096	0.096032235	58	CON__P15497			yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			85.984	84.778	3	1.4792E-09	69502	160511_QHF_FH_JSI9i_3	133.16	115.11		+	0.90512	0.74587	9.0121	3	3	Plateau	1.0004	0.81376	12.32	2	2	Median	0.68812	0.78189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	131100000	75778000	55317000	90069000	51182000	38887000	41027000	24596000	16431000	0	0	0	0	0	0	56432	58	53145	342512;342513;342514	461826;461827;461828	461827			3	
VREVSQPDWTPPPEVTLVLTK	1	Unmodified	2390.2846	0.28456129	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	2	2	4	2	89.302	87.912	2;3	1.7102E-07	79660	160511_QHF_FH_JSI11i_3	88.071	81.422			1.1461	1.1169	14.792	10	0	Median	1.3674	1.1337	25.267	2	0	Median	0.7676	0.92069	12.681	2	0	Median	1.1774	1.1363	1.6884	4	0	Median	1.0438	1.1122	22.432	2	0	Median	2291600000	1084900000	1206700000	288910000	140920000	148000000	570780000	300040000	270740000	1089900000	467910000	621990000	342020000	176000000	166020000	56433	1034	53146	342515;342516;342517;342518;342519;342520;342521;342522;342523;342524	461829;461830;461831;461832;461833;461834;461835;461836;461837;461838;461839;461840;461841;461842;461843;461844;461845;461846;461847;461848;461849;461850;461851;461852;461853;461854;461855	461831			27	
VREYELR	0	Unmodified	963.51378	0.51377937	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.71	0.452		2	5							4	2	1		14.757	14.013	2;3	0.0099763	11124	160511_QHF_FH_JSI10i_3	120.46	51.074			1.1093	0.9749	15.131	7	1	Median	1.4076	1.1543	11.934	4	1	Median	0.73153	0.86675	8.8814	2	0	Median	1.0396	0.9749	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1382700000	611980000	770720000	945520000	388190000	557330000	317330000	175180000	142160000	119850000	48607000	71238000	0	0	0	56434	2038	53147	342525;342526;342527;342528;342529;342530;342531	461856;461857;461858;461859;461860	461856			5	
VRGADAAQAK	1	Unmodified	985.53049	0.53049207	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		5.3145	4.9239	2;3	1.4821E-06	2856	160511_QHF_FH_JSI10i_3	116.3	88.78			0.89172	1.2025	17.285	5	0	Linear	1.3729	1.1099	16.915	2	0	Median	0.84036	0.97974	8.8457	2	0	Median	0.81131	0.77985	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1049900000	499630000	550230000	583020000	243220000	339800000	404870000	221350000	183510000	61972000	35057000	26915000	0	0	0	56435	2294	53148	342532;342533;342534;342535;342536	461861;461862;461863	461862			3	
VRGEGPGEAGGPLTPR	0	Unmodified	1548.8009	0.80085327	1709	P50548	ERF	ETS domain-containing transcription factor ERF	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				24.321	23	3	0.002927	18553	160511_QHF_FH_JSI9i_3	58.461	46.988			0.78734	0.65301	NaN	1	1	Median	0.78734	0.65301	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16572000	9868500	6703900	16572000	9868500	6703900	0	0	0	0	0	0	0	0	0	56436	1709	53149	342537;342538	461864;461865	461865			2	
VRGEVAPDAK	1	Unmodified	1040.5615	0.56145784	926	P09382	LGALS1	Galectin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	6.11	4	7	8					4	4	6	7	8	6	9.1373	6.3963	2;3	6.7312E-09	5482	160511_QHF_FH_JSI12i_3	142.43	109.59			0.95555	0.97677	13.61	27	1	Median	1.1254	0.95616	10.657	6	0	Median	0.90392	1.0334	12.316	7	0	Median	0.99627	0.9835	13.829	8	1	Median	0.8261	0.88649	13.293	6	0	Median	27386000000	13563000000	13823000000	6371500000	2589700000	3781800000	11506000000	5835900000	5669700000	8277400000	4489700000	3787700000	1231600000	647930000	583710000	56437	926	53150	342539;342540;342541;342542;342543;342544;342545;342546;342547;342548;342549;342550;342551;342552;342553;342554;342555;342556;342557;342558;342559;342560;342561;342562;342563;342564;342565	461866;461867;461868;461869;461870;461871;461872;461873;461874;461875;461876;461877;461878;461879;461880;461881;461882;461883;461884;461885;461886;461887;461888;461889;461890;461891;461892;461893;461894;461895;461896;461897;461898;461899;461900;461901;461902;461903	461899			38	
VRGPEYLTQMWHFMCDALIK	1	Unmodified	2494.196	0.19596275	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			95.132	89.411	4	1.834E-45	51547	160513_QHF_FH_JSI10Kac_6	185.87	169.98			0.75836	0.91019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75836	0.91019	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153200000	83519000	69681000	0	0	0	153200000	83519000	69681000	0	0	0	0	0	0	56438	127	53151	342566	461904;461905	461905			2	
VRGSEIPK	1	Unmodified	884.50797	0.50796571	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		3	0			5							2	2	1		9.2346	8.7421	2;3	0.0024279	6462	160511_QHF_FH_JSI9i_3	64.711	41.971			0.92128	0.88547	24.14	5	0	Median	1.3098	1.0681	4.0748	2	0	Median	0.5758	0.67197	12.289	2	0	Median	0.92128	0.88547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	755630000	350590000	405040000	301870000	117880000	183990000	284580000	150700000	133880000	169170000	82008000	87166000	0	0	0	56439	4292	53152	342567;342568;342569;342570;342571	461906;461907;461908;461909	461909			4	
VRIDEYDYSK	1	Unmodified	1286.6143	0.61428128	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.06	5.48	2	8	4					3	1	3	4	6	5	35.742	33.107	2;3	3.925E-06	28853	160511_QHF_FH_JSI11i_3	88.83	80.317			1.0212	1.0438	18.307	18	4	Median	1.1616	1.0001	5.7237	3	1	Median	0.81793	0.98307	31.207	4	1	Median	1.134	1.1077	18.899	6	1	Median	1.0068	1.0948	10.592	5	1	Median	4236500000	2055300000	2181100000	646670000	296060000	350610000	847540000	450490000	397050000	1340700000	588160000	752550000	1401600000	720630000	680930000	56440	1367	53153	342572;342573;342574;342575;342576;342577;342578;342579;342580;342581;342582;342583;342584;342585;342586;342587;342588;342589	461910;461911;461912;461913;461914;461915;461916;461917;461918;461919;461920;461921;461922;461923;461924;461925	461911			14	
VRIDEYDYSKPIQGQQK	2	Acetyl (K)	2108.0538	0.05383307	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	2		By MS/MS	By MS/MS	By MS/MS	15	0								4			2	1	1	62.396	51.647	3	0.0012207	26203	160513_QHF_FH_JSI10Kac_5	77.746	67.55			0.88609	0.92777	152.95	4	2	Median	NaN	NaN	NaN	0	0	Median	0.99993	1.1895	255.59	2	2	Median	0.59063	0.58542	NaN	1	0	Median	1.3293	1.4703	NaN	1	0	Median	49910000	28636000	21274000	0	0	0	14190000	8899800	5289800	26741000	14922000	11819000	8979400	4814800	4164600	56441	1367	53154	342590;342591;342592;342593	461926;461927;461928;461929;461930	461930	1300		5	
VRIDQYQGADAVGLEEK	1	Unmodified	1889.9483	0.94830537	328	O43396	TXNL1	Thioredoxin-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	3	3	2	52.256	51.488	2;3	1.4845E-06	45049	160511_QHF_FH_JSI9i_2	115.15	98.073			0.98154	1.0613	13.835	10	3	Median	1.2889	1.118	31.046	2	1	Median	0.92849	1.0524	7.4657	3	2	Plateau	1.1265	1.0889	1.1763	3	0	Median	0.83172	0.89915	7.0518	2	0	Median	1469400000	736930000	732450000	217650000	84983000	132670000	399810000	229630000	170180000	743140000	370400000	372740000	108770000	51912000	56860000	56442	328	53155	342594;342595;342596;342597;342598;342599;342600;342601;342602;342603	461931;461932;461933;461934;461935;461936;461937;461938;461939;461940;461941;461942;461943;461944	461937			14	
VRIEGDNENK	1	Unmodified	1172.5786	0.57856447	1725	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.54	0.499		6	7							2	4	4	3	9.175	8.8442	2;3	1.4202E-08	6544	160511_QHF_FH_JSI11i_3	111.63	61.277			1.161	1.2369	39.256	10	1	Median	1.4305	1.2763	36.572	2	0	Median	0.97958	1.1548	14.834	4	0	Median	1.285	1.2192	56.035	3	0	Median	2.4264	2.425	NaN	1	1	Median	839660000	359950000	479710000	148040000	67076000	80960000	208580000	108750000	99831000	390690000	157090000	233600000	92355000	27032000	65323000	56443	1725	53156	342604;342605;342606;342607;342608;342609;342610;342611;342612;342613;342614;342615;342616	461945;461946;461947;461948;461949;461950;461951;461952;461953;461954;461955;461956;461957;461958;461959	461947			15	
VRIPAEVLILNSIVLPHK	1	Unmodified	2010.2354	0.23536667	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.852	84.132	4	0.00087686	47769	160513_QHF_FH_JSI10Kac_6	59.9	56.059			0.94336	1.125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94336	1.125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75402000	33418000	41983000	0	0	0	75402000	33418000	41983000	0	0	0	0	0	0	56444	4124	53157	342617	461960	461960			1	
VRLELEK	1	Unmodified	885.52837	0.5283668	4255	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		27.314	27.314	3	0.0075925	23377	160511_QHF_FH_JSI11i_3	57.047	0			0.92777	0.86787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92777	0.86787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79275000	37892000	41383000	0	0	0	0	0	0	79275000	37892000	41383000	0	0	0	56445	4255	53158	342618	461961	461961			1	
VRLPVDDSTGK	1	Unmodified	1185.6354	0.63535107	4505	Q9BWU0	SLC4A1AP	Kanadaptin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			31.034	29.651	3	0.00053915	24635	160511_QHF_FH_JSI10i_3	64.827	54.069			0.87885	0.84637	4.4178	2	0	Median	1.0131	0.82034	NaN	1	0	Median	0.76243	0.87323	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93670000	41982000	51688000	44334000	18484000	25850000	49337000	23498000	25838000	0	0	0	0	0	0	56446	4505	53159	342619;342620	461962;461963;461964;461965	461963			4	
VRLSPEPWTPETGLVTDAFK	1	Unmodified	2242.1634	0.16338352	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			91.768	90.749	3	8.3694E-05	75762	160511_QHF_FH_JSI10i_3	69.148	50.213			0.67098	0.78464	8.6702	2	2	Median	NaN	NaN	NaN	0	0	Median	0.67098	0.78464	8.6702	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20654000	13912000	6742000	0	0	0	20654000	13912000	6742000	0	0	0	0	0	0	56447	418	53160	342621;342622	461966;461967	461966			2	
VRNNYDEEIISLK	1	Unmodified	1591.8206	0.82058566	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.86	0.35		1	6							3	2	2		50.578	49.524	2;3	6.8017E-06	41491	160511_QHF_FH_JSI10i_3	122.64	98.705			1.2192	1.0323	14.335	7	0	Median	1.2632	1.0929	20.53	3	0	Median	0.873	1.0116	0.16243	2	0	Median	1.1673	1.0898	7.6628	2	0	Median	NaN	NaN	NaN	0	0	Median	858000000	387380000	470620000	161110000	60770000	100340000	282010000	155500000	126510000	414880000	171110000	243770000	0	0	0	56448	1085	53161	342623;342624;342625;342626;342627;342628;342629	461968;461969;461970;461971;461972;461973;461974;461975;461976	461974			9	
VRPAELEQFESTIGFK	1	Unmodified	1849.9574	0.95741349	339	O43491	EPB41L2	Band 4.1-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		81.354	80.477	3	0.00049227	67671	160511_QHF_FH_JSI10i_3	70.281	54.645			0.8545	0.96871	39.462	3	3	Median	0.67774	0.5827	NaN	1	1	Median	0.8545	0.96871	NaN	1	1	Median	1.3491	1.2674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42267000	18823000	23444000	6692700	4418600	2274000	23320000	10616000	12704000	12255000	3788600	8466000	0	0	0	56449	339	53162	342630;342631;342632	461977;461978;461979	461978			3	
VRPDATTK	1	Unmodified	886.48723	0.48723027	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							2	1	1	2	5.6665	5.4593	2;3	0.0089422	3357	160511_QHF_FH_JSI9i_3	41.54	14.938			1.0885	1.0445	101.22	6	0	Median	1.1719	0.96826	16.586	2	0	Median	0.86376	1.0021	NaN	1	0	Median	12.239	11.558	NaN	1	0	Median	0.91633	1.0111	26.262	2	0	Median	1028600000	414060000	614510000	290780000	134940000	155840000	344260000	200400000	143860000	280650000	21106000	259540000	112890000	57620000	55267000	56450	1117	53163	342633;342634;342635;342636;342637;342638	461980;461981;461982;461983	461981			4	
VRPDYTAQNLDHGK	1	Unmodified	1612.7958	0.79576789	2113	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							1	3	3		21.342	20.645	2;3;4	4.8382E-05	16734	160511_QHF_FH_JSI9i_3	91.076	73.96			0.83273	0.84488	13.235	7	1	Median	1.2265	0.98244	NaN	1	0	Median	0.72322	0.84488	12.222	3	0	Median	0.87201	0.82873	15.27	3	1	Median	NaN	NaN	NaN	0	0	Median	868510000	406790000	461710000	198250000	80103000	118150000	323670000	161710000	161960000	346580000	164980000	181610000	0	0	0	56451	2113	53164	342639;342640;342641;342642;342643;342644;342645	461984;461985;461986;461987;461988;461989;461990;461991;461992;461993	461993			10	
VRPTVLMPLWNVLGFALGAGTALLGK	1	Unmodified	2693.5455	0.5454842	4317	Q99807	COQ7	5-demethoxyubiquinone hydroxylase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			103.58	97.864	3;4	1.18E-52	57932	160513_QHF_FH_JSI10Kac_6	177.6	164.92			0.8195	0.95917	15.405	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8195	0.95917	15.405	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	272150000	144710000	127440000	0	0	0	272150000	144710000	127440000	0	0	0	0	0	0	56452	4317	53165	342646;342647	461994;461995;461996	461995			3	
VRQDLVK	1	Unmodified	856.51305	0.51305109	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	10.334	10.429	3	0.030159	7726	160511_QHF_FH_JSI12i_3	35.618	0.79413			0.66478	0.67874	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66478	0.67874	NaN	1	0	Median	179400000	93818000	85579000	0	0	0	0	0	0	0	0	0	179400000	93818000	85579000	56453	122	53166	342648	461997	461997			1	
VRQDLVKDDIK	2	Acetyl (K)	1369.7565	0.75652884	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	1	0	0	2		By matching	By MS/MS		15	0								2			1	1		44.49	34.346	3	0.051358	19452	160513_QHF_FH_JSI11Kac_5	39.424	14.729			1.1687	1.2564	18.412	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2184	1.4311	NaN	1	0	Median	1.1211	1.103	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7723600	3071000	4652600	0	0	0	2915200	883360	2031800	4808500	2187700	2620800	0	0	0	56454	122	53167	342649;342650	461998	461998			1	
VRQEESEQIK	1	Unmodified	1244.6361	0.63607935	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.29		9	7				1	4		4	6	6	5	8.4875	6.0839	2;3	1.4021E-14	5324	160511_QHF_FH_JSI11i_3	150.46	126.11		+	0.9536	0.96757	18.544	21	4	Median	1.0422	0.88598	3.3681	4	0	Median	0.83222	0.98734	22.577	6	2	Median	1.0297	1.0091	21.3	6	2	Median	0.85062	0.87923	10.849	5	0	Median	9969200000	4966600000	5002600000	1068100000	498970000	569150000	2395000000	1391000000	1004100000	4834200000	2156000000	2678200000	1671800000	920650000	751200000	56455	53;71	53168	342651;342652;342653;342654;342655;342656;342657;342658;342659;342660;342661;342662;342663;342664;342665;342666;342667;342668;342669;342670;342671	461999;462000;462001;462002;462003;462004;462005;462006;462007;462008;462009;462010;462011;462012;462013;462014;462015;462016;462017;462018;462019;462020;462021;462022;462023;462024;462025;462026;462027;462028	462001			29	
VRQEESEQIKTLNNK	2	Acetyl (K)	1856.9592	0.9592044	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	1	0	0	2		By MS/MS	By MS/MS		15	0								2			1	1		36.862	26.979	3	0.054899	14416	160513_QHF_FH_JSI10Kac_5	38.511	27.037		+	0.31671	0.31433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31671	0.31433	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4481100	3407200	1073800	0	0	0	0	0	0	4481100	3407200	1073800	0	0	0	56456	53;71	53169	342672;342673	462029;462030	462030	33		2	
VRQGQGQSEPGEYEQR	0	Unmodified	1846.8558	0.85580196	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				10.246	9.6024	3	0.0023669	7158	160511_QHF_FH_JSI9i_3	45.14	27.651			2.0425	1.6478	NaN	1	0	Median	2.0425	1.6478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18212000	5536100	12675000	18212000	5536100	12675000	0	0	0	0	0	0	0	0	0	56457	1554	53170	342674	462031	462031			1	
VRTDITYPAGFMDVISIDK	1	Oxidation (M)	2156.0824	0.082356006	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	3	0			6								2	2	2	82.514	82.023	3	4.882E-09	71333	160511_QHF_FH_JSI12i_3	114.46	105.05			1.0316	1.0306	18.088	6	2	Median	NaN	NaN	NaN	0	0	Median	1.1395	1.3231	2.5652	2	0	Median	1.061	1.0016	17.081	2	1	Median	0.91364	0.93741	0.35323	2	1	Median	876080000	440310000	435760000	0	0	0	107920000	52743000	55175000	321720000	151400000	170330000	446430000	236170000	210260000	56458	2013	53171	342675;342676;342677;342678;342679;342680	462032;462033;462034;462035;462036;462037;462038;462039;462040;462041	462039		1669	10	
VRTDITYPAGFMDVISIDK	1	Unmodified	2140.0874	0.087441384	2013	P62701	RPS4X	40S ribosomal protein S4, X isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.46	4.96	3	8	11						4	5	6	10	5	94.92	93.491	2;3;4	3.2672E-53	83302	160511_QHF_FH_JSI12i_3	252.3	232.56			0.97758	0.98408	14.46	26	6	Median	1.225	1.0554	7.9252	5	1	Median	0.89516	1.0469	10.344	6	0	Median	1.0404	0.99473	19.026	10	5	Median	0.84071	0.8824	4.0795	5	0	Median	9150300000	4540600000	4609600000	875480000	371440000	504040000	1364900000	721570000	643300000	4070600000	1895200000	2175400000	2839300000	1552400000	1286800000	56459	2013	53171	342681;342682;342683;342684;342685;342686;342687;342688;342689;342690;342691;342692;342693;342694;342695;342696;342697;342698;342699;342700;342701;342702;342703;342704;342705;342706	462042;462043;462044;462045;462046;462047;462048;462049;462050;462051;462052;462053;462054;462055;462056;462057;462058;462059;462060;462061;462062;462063;462064;462065;462066;462067;462068;462069;462070;462071;462072;462073;462074;462075;462076;462077;462078;462079;462080;462081;462082;462083;462084;462085;462086;462087;462088;462089;462090;462091;462092;462093;462094;462095;462096;462097;462098;462099;462100;462101;462102;462103;462104;462105;462106;462107;462108;462109;462110;462111;462112;462113;462114	462103			73	
VRTELADK	1	Unmodified	930.51345	0.51344502	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		2	8							3	3	2	2	10.11	9.7563	2;3	0.0014487	7402	160511_QHF_FH_JSI10i_3	72.643	42.079			1.0849	1.0948	20.999	10	0	Median	1.5909	1.2725	3.6204	3	0	Median	0.68689	0.79404	31.278	3	0	Median	1.0849	1.0208	1.8229	2	0	Median	1.07	1.0948	2.6386	2	0	Median	5446800000	2681000000	2765800000	1031500000	375940000	655560000	1976900000	1125400000	851530000	1976700000	954330000	1022300000	461750000	225370000	236380000	56460	1436	53172	342707;342708;342709;342710;342711;342712;342713;342714;342715;342716	462115;462116;462117;462118;462119;462120	462116			6	
VRVDLPDK	1	Unmodified	940.53418	0.53418046	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	29.384	29.331	3	0.0033752	24714	160511_QHF_FH_JSI12i_3	52.49	40.443			0.85905	0.88724	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85905	0.88724	NaN	1	0	Median	133590000	78439000	55153000	0	0	0	0	0	0	0	0	0	133590000	78439000	55153000	56461	1989	53173	342717	462121	462121			1	
VRVDSTAK	1	Unmodified	874.48723	0.48723027	2090	P78371	CCT2	T-complex protein 1 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.45	6.34		3	8					5	4	7	5	4	4	6.9967	3.2448	2;3	0.0010414	4029	160511_QHF_FH_JSI10i_3	73.985	57.209			1.01	0.91463	25.734	19	2	Median	1.0895	0.91784	30.127	6	1	Median	0.84041	0.99655	34.402	5	1	Median	0.9239	0.89483	11.641	4	0	Median	0.91211	0.9782	14.968	4	0	Median	15530000000	7326400000	8203100000	2627100000	974260000	1652800000	3627800000	1819100000	1808700000	5881200000	2837400000	3043800000	3393400000	1695600000	1697700000	56462	2090	53174	342718;342719;342720;342721;342722;342723;342724;342725;342726;342727;342728;342729;342730;342731;342732;342733;342734;342735;342736;342737	462122;462123;462124;462125;462126;462127;462128;462129;462130;462131;462132;462133;462134;462135;462136;462137;462138;462139;462140;462141;462142;462143;462144;462145;462146;462147;462148;462149;462150	462126			29	
VRVDYIIIK	1	Unmodified	1117.6859	0.68593008	4894	Q9NPB8	GPCPD1	Glycerophosphocholine phosphodiesterase GPCPD1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	1	1	4	3	63.021	56.899	3	0.00091959	31273	160513_QHF_FH_JSI10Kac_6	78.655	34.452			1.3539	1.3846	42.634	6	2	Median	1.549	1.3458	NaN	1	0	Median	1.2458	1.4778	NaN	1	0	Median	0.9524	0.90155	64.695	2	1	Median	1.39	1.4444	45.162	2	1	Median	85617000	42006000	43610000	10084000	3698500	6385300	18130000	7644500	10485000	23209000	11996000	11213000	34194000	18667000	15526000	56463	4894	53175	342738;342739;342740;342741;342742;342743;342744;342745;342746	462151;462152;462153;462154;462155;462156;462157;462158;462159;462160;462161;462162;462163	462162			13	
VRVEALQSGGGQER	0	Unmodified	1484.7696	0.76955314	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			22.158	20.921	3	0.015414	16817	160511_QHF_FH_JSI9i_3	40.211	34.727			0.92564	0.88598	0.7181	2	0	Median	1.0785	0.89049	NaN	1	0	Median	0.79446	0.88149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98777000	49093000	49683000	69531000	33953000	35579000	29245000	15141000	14104000	0	0	0	0	0	0	56464	5712	53176	342747;342748	462164;462165	462164			2	
VRVEGDNDK	1	Unmodified	1030.5043	0.5043369	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		5.8087	5.8087	3	0.0042664	3565	160511_QHF_FH_JSI11i_3	48.998	39.217			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56465	1726	53177	342749	462166	462166			1	
VRVELSNGEK	1	Unmodified	1129.6091	0.60913632	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.49		1	6						5	4	3	3	2	22.171	17.999	2;3	3.7037E-06	14453	160511_QHF_FH_JSI9i_3	93.345	82.132			1.3031	1.1244	38.192	11	4	Median	1.5729	1.2834	37.581	4	0	Median	0.77692	0.89221	35.228	3	2	Median	0.8711	0.8188	30.672	3	1	Plateau	2.0816	2.294	NaN	1	1	Median	4711400000	1849600000	2861900000	1390500000	547720000	842790000	1100500000	565210000	535280000	2212400000	733870000	1478500000	8055900	2792100	5263800	56466	2131	53178	342750;342751;342752;342753;342754;342755;342756;342757;342758;342759;342760;342761	462167;462168;462169;462170;462171;462172;462173;462174;462175;462176;462177;462178;462179;462180;462181;462182;462183	462175			17	
VRVELSNGEKR	1	Acetyl (K)	1327.7208	0.72081203	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		33.578	24.253	3	0.0021453	13655	160513_QHF_FH_JSI11Kac_6	74.392	58.139			0.50737	0.49492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50737	0.49492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12106000	8664000	3442000	0	0	0	0	0	0	12106000	8664000	3442000	0	0	0	56467	2131	53179	342762;342763	462184;462185	462184	2234		2	
VRVELSTGMPR	0	Unmodified	1243.6707	0.67069072	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			7.33	6.13			2						1	2	1			42.2	40.66	3	0.0098049	33825	160511_QHF_FH_JSI10i_3	41.242	37.225			0.95519	0.91823	14.187	2	0	Median	1.0371	0.83058	NaN	1	0	Median	0.87976	1.0151	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	219480000	109840000	109640000	150980000	78917000	72060000	68499000	30921000	37578000	0	0	0	0	0	0	56468	2745	53180	342764;342765;342766	462186;462187;462188	462186			3	
VRVESGYFSLEK	1	Unmodified	1412.73	0.72997974	3165	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			52.559	50.997	3	0.020735	42679	160511_QHF_FH_JSI10i_3	41.644	30.795			0.56565	0.6456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56565	0.6456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48438000	29284000	19154000	0	0	0	48438000	29284000	19154000	0	0	0	0	0	0	56469	3165	53181	342767	462189	462189			1	
VRVPEGLLK	1	Unmodified	1009.6284	0.6284152	3319	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		45.862	44.805	3	0.0025203	38973	160511_QHF_FH_JSI11i_3	61.958	43.286			0.83541	0.95288	22.164	3	1	Plateau	0.95695	0.77062	NaN	1	0	Median	0.81563	0.95288	NaN	1	0	Median	1.2654	1.2003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	89734000	46751000	42983000	24978000	12595000	12383000	27564000	15460000	12104000	37191000	18696000	18496000	0	0	0	56470	3319	53182	342768;342769;342770	462190;462191;462192	462190			3	
VRYDSSNQVK	1	Unmodified	1194.5993	0.59929991	744	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							1	2	2		9.4281	9.0642	2;3	3.8958E-07	6854	160511_QHF_FH_JSI11i_3	100.55	81.311			0.77478	0.80948	26.01	5	0	Median	1.5629	1.2715	NaN	1	0	Median	0.74157	0.8754	11.071	2	0	Median	0.73541	0.68708	6.4465	2	0	Median	NaN	NaN	NaN	0	0	Median	302840000	160180000	142650000	29338000	13272000	16066000	123970000	62841000	61127000	149530000	84070000	65459000	0	0	0	56471	744	53183	342771;342772;342773;342774;342775	462193;462194;462195;462196;462197	462195			5	
VRYGLIPEEFFQFLYPK	1	Unmodified	2145.1299	0.12989855	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.766	91.046	3	0.00088536	52802	160513_QHF_FH_JSI10Kac_6	123.03	107.26			1.1006	1.3212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1006	1.3212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	152980000	67824000	85158000	0	0	0	152980000	67824000	85158000	0	0	0	0	0	0	56472	1246	53184	342776	462198	462198			1	
VRYSLDPENPTK	1	Unmodified	1417.7201	0.72014333	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	4.62	4.67		4	7					1	1	5	4	3	1	36.373	34.079	2;3	4.3485E-07	27681	160511_QHF_FH_JSI9i_3	105.65	96.602			1.1701	1.158	14.728	12	0	Median	1.4361	1.2111	12.506	5	0	Median	1.1307	1.2795	8.7805	3	0	Median	1.1822	1.1108	5.8819	3	0	Median	0.7858	0.78115	NaN	1	0	Median	3805900000	1794800000	2011100000	1355800000	592390000	763430000	1079400000	589420000	489960000	1216100000	527160000	688950000	154600000	85853000	68745000	56473	1143	53185	342777;342778;342779;342780;342781;342782;342783;342784;342785;342786;342787;342788;342789	462199;462200;462201;462202;462203;462204;462205;462206;462207;462208;462209;462210;462211;462212;462213;462214;462215;462216;462217;462218;462219;462220	462208			22	
VSAARPNDLDGK	1	Unmodified	1241.6364	0.6364137	3140	Q6T4R5	NHS	Nance-Horan syndrome protein	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		15.004	15.004	3	0.044003	12207	160511_QHF_FH_JSI11i_3	25.014	14.109			1.5006	1.3735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5006	1.3735	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27994000	10993000	17001000	0	0	0	0	0	0	27994000	10993000	17001000	0	0	0	56474	3140	53186	342790	462221	462221			1	
VSADEDLK	1	Unmodified	875.42363	0.42362696	5437	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS		By MS/MS	1	0	3									1	1		1	15.556	14.987	2	0.036037	12499	160511_QHF_FH_JSI10i_1	40.352	6.0989			0.82502	1.1133	29.065	3	0	Plateau	0.82502	0.67412	NaN	1	0	Median	0.82439	0.96904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1827	1.1977	NaN	1	0	Median	475030000	251220000	223820000	124730000	69207000	55519000	171670000	96299000	75371000	0	0	0	178640000	85709000	92928000	56475	5437	53187	342791;342792;342793	462222	462222			1	
VSAGEPGSHPSPAPR	0	Unmodified	1444.7059	0.70589025	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							2	1	1		13.084	12.604	3	0.012637	10212	160511_QHF_FH_JSI9i_2	43.316	29.637			0.95335	0.92118	17.786	4	3	Median	1.082	0.94534	29.447	2	2	Median	0.69945	0.86641	NaN	1	0	Median	1.015	0.97942	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176870000	94253000	82620000	74479000	37925000	36554000	40198000	26825000	13373000	62196000	29503000	32693000	0	0	0	56476	5627	53188	342794;342795;342796;342797	462223;462224;462225;462226	462224			4	
VSAHITEQLGMAPGGEFR	0	Unmodified	1898.9309	0.93088116	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	59.259	58.88	2;3	2.6631E-05	50572	160511_QHF_FH_JSI12i_3	74.519	69.97			0.90742	0.89085	2.7709	3	2	Median	NaN	NaN	NaN	0	0	Median	0.72286	0.89085	NaN	1	1	Median	0.92574	0.86215	NaN	1	1	Median	0.90742	0.91098	NaN	1	0	Median	230250000	121450000	108800000	0	0	0	22448000	13746000	8702200	101600000	47771000	53825000	106210000	59935000	46274000	56477	4721	53189	342798;342799;342800;342801	462227;462228;462229;462230	462229			4	
VSALTQMESACVSIHEALK	1	Unmodified	2073.0235	0.023460919	5573	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	77.197	77.064	3	5.7081E-33	67001	160511_QHF_FH_JSI12i_3	148.44	133.05			1.3765	1.3052	47.327	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0419	0.93397	NaN	1	1	Median	1.8185	1.8239	NaN	1	1	Median	154040000	64644000	89400000	0	0	0	0	0	0	48261000	26289000	21972000	105780000	38354000	67428000	56478	5573	53190	342802;342803;342804	462231;462232;462233	462233			3	
VSAMDNTQQVDGSASVGR	0	Unmodified	1820.8323	0.83228933	4719	Q9H4G0	EPB41L1	Band 4.1-like protein 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.709	31.445	2	0.0029924	27527	160511_QHF_FH_JSI9i_1	70.412	56.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56479	4719	53191	342805	462234	462234			1	
VSANSVYGFTGAQVGK	1	Unmodified	1583.7944	0.79437091	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.42	0.493	7	5								2	3	3	4	55.977	55.254	2;3	1.1203E-21	48734	160511_QHF_FH_JSI10i_2	134.56	99.051			0.94199	0.94144	23.671	9	4	Median	1.055	0.8637	NaN	1	0	Median	0.87269	1.0154	10.692	2	0	Median	1.1687	1.1579	14.934	2	1	Median	0.75873	0.81521	26.753	4	3	Median	417250000	206160000	211090000	69616000	25294000	44323000	100510000	49173000	51339000	89364000	45243000	44121000	157760000	86447000	71308000	56480	1307	53192	342806;342807;342808;342809;342810;342811;342812;342813;342814;342815;342816;342817	462235;462236;462237;462238;462239;462240;462241;462242;462243;462244;462245	462245			11	
VSAPEVSVGHK	1	Unmodified	1108.5877	0.58767259	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	0.493		7	5							2	3	2	5	24.379	23.777	2;3	6.016E-05	20561	160511_QHF_FH_JSI10i_2	64.64	50.522			1.0097	1.0324	32.37	9	3	Median	1.0394	0.89322	23.112	2	0	Median	1.0267	1.2507	1.721	2	1	Median	1.1877	1.1612	41.032	2	1	Median	1.0097	1.0324	29.846	3	1	Plateau	898800000	418060000	480740000	154150000	70637000	83513000	187570000	105740000	81832000	220370000	93379000	126990000	336720000	148300000	188410000	56481	2286	53193	342818;342819;342820;342821;342822;342823;342824;342825;342826;342827;342828;342829	462246;462247;462248;462249;462250;462251;462252;462253;462254;462255;462256;462257;462258;462259	462252			14	
VSAPGVQGDVK	1	Unmodified	1055.5611	0.56112349	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	24.829	24.498	2	0.0040387	21644	160511_QHF_FH_JSI12i_1	55.084	39.933			0.99498	1.0589	44.748	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9538	1.1001	NaN	1	1	Median	2.3467	2.3412	NaN	1	0	Median	0.99498	1.0589	NaN	1	0	Median	793840000	371600000	422240000	0	0	0	327900000	179950000	147960000	131930000	26608000	105320000	334010000	165050000	168960000	56482	2286	53194	342830;342831;342832;342833	462260;462261;462262;462263;462264	462261			5	
VSAQEVRK	1	Unmodified	915.51378	0.51377937	1073	P15311	EZR	Ezrin	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				8.6933	8.2172	2	0.062237	6081	160511_QHF_FH_JSI9i_2	34.808	1.0111			1.2838	1.0784	NaN	1	0	Median	1.2838	1.0784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67563000	29597000	37967000	67563000	29597000	37967000	0	0	0	0	0	0	0	0	0	56483	1073	53195	342834	462265	462265			1	
VSAQGITLTDNQRK	1	Unmodified	1529.8162	0.81616898	3024	Q68CZ2;Q9HBL0	TNS3;TNS1	Tensin-3;Tensin-1	no	no	0	0	0	1		By MS/MS			3	0			1								1			30.043	28.7	3	0.020924	23863	160511_QHF_FH_JSI10i_3	31.043	20.255			0.81828	0.95476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81828	0.95476	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37621000	20131000	17490000	0	0	0	37621000	20131000	17490000	0	0	0	0	0	0	56484	3024	53196	342835	462266	462266			1	
VSASPLLYTLIEK	1	Unmodified	1432.8177	0.81773211	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.19	4.87	3	8	7						3	4	5	6	6	93.876	92.286	2;3	3.2079E-12	43910	160513_QHF_FH_JSI11Kac_6	125.97	91.083			1.0604	1.0373	21.169	21	0	Median	1.168	1.0037	5.3423	4	0	Median	0.89985	1.0562	20.861	5	0	Median	1.0123	1.0219	12.668	6	0	Median	0.99156	1.0437	33.081	6	0	Median	6176800000	3075400000	3101500000	752500000	316360000	436130000	1117000000	591360000	525600000	2221200000	1132600000	1088600000	2086200000	1035000000	1051100000	56485	793	53197	342836;342837;342838;342839;342840;342841;342842;342843;342844;342845;342846;342847;342848;342849;342850;342851;342852;342853;342854;342855;342856	462267;462268;462269;462270;462271;462272;462273;462274;462275;462276;462277;462278;462279;462280;462281;462282;462283;462284;462285;462286;462287;462288;462289;462290;462291;462292;462293;462294;462295;462296;462297;462298;462299;462300;462301;462302;462303;462304;462305;462306;462307;462308;462309;462310;462311;462312;462313;462314;462315;462316;462317	462285			51	
VSASSPSLAVASQSDSK	1	Unmodified	1619.8002	0.80024414	806	P04150	NR3C1	Glucocorticoid receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	35.682	34.952	2	4.0975E-06	31196	160511_QHF_FH_JSI10i_1	112.42	103.1			0.9764	0.87768	20.979	5	3	Median	0.95499	0.77181	12.34	2	2	Median	0.78017	0.87768	NaN	1	0	Median	1.2756	1.2336	NaN	1	1	Median	0.9764	1.0212	NaN	1	0	Median	136000000	64749000	71248000	41096000	20469000	20627000	30224000	13228000	16996000	35225000	14702000	20523000	29453000	16351000	13102000	56486	806	53198	342857;342858;342859;342860;342861	462318;462319;462320;462321;462322;462323;462324	462321			7	
VSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENR	0	Unmodified	4003.8268	0.82675284	3265	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		59.632	58.99	3;4	4.0754E-08	53354	160511_QHF_FH_JSI10i_1	46.186	41.377			0.89593	1.0159	8.7038	3	2	Plateau	1.482	1.209	NaN	1	1	Median	0.89593	1.0159	NaN	1	0	Median	1.1484	1.1112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	66828000	32464000	34364000	16136000	11806000	4330400	31803000	15684000	16119000	18889000	4974200	13915000	0	0	0	56487	3265	53199	342862;342863;342864	462325;462326;462327;462328;462329	462328			5	
VSASVAEVQEQYTER	0	Unmodified	1694.8111	0.81114318	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	44.98	44.254	2	1.1471E-09	39337	160511_QHF_FH_JSI9i_1	144.57	128.82			1.1618	1.1746	13.065	4	2	Median	1.4734	1.2133	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96937	0.94427	NaN	1	0	Median	1.1618	1.2024	7.9076	2	2	Median	375880000	169640000	206250000	58165000	26760000	31405000	0	0	0	123650000	53431000	70222000	194060000	89445000	104620000	56488	2787	53200	342865;342866;342867;342868	462330;462331;462332;462333;462334	462334			5	
VSASWSYTAFVTR	0	Unmodified	1473.7252	0.72522871	25	A6NED2	RCCD1	RCC1 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	77.358	68.951	2	9.2238E-05	36906	160513_QHF_FH_JSI9Kac_6	90.434	75.422			1.2242	1.186	18.555	4	1	Median	1.4187	1.1988	NaN	1	0	Median	0.74348	0.8861	NaN	1	0	Median	1.3858	1.3801	NaN	1	1	Median	1.0813	1.1733	NaN	1	0	Median	179840000	90507000	89331000	32260000	14274000	17986000	98006000	55381000	42625000	37539000	14428000	23111000	12032000	6423300	5608500	56489	25	53201	342869;342870;342871;342872	462335;462336;462337	462336			3	
VSAVEEVR	0	Unmodified	887.47125	0.47124585	5355	Q9UJY4	GGA2	ADP-ribosylation factor-binding protein GGA2	yes	yes	0	0	0	0	By MS/MS				15	0								1		1				5.505	-3.9302	3	0.059857	1749	160513_QHF_FH_JSI9Kac_5	16.333	3.8059			0.026395	0.021237	NaN	1	1	Median	0.026395	0.021237	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5645400	5356700	288710	5645400	5356700	288710	0	0	0	0	0	0	0	0	0	56490	5355	53202	342873	462338	462338			1	
VSAWELINSEYFSEGR	0	Unmodified	1885.8846	0.88464248	1898	P58107	EPPK1	Epiplakin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	97.764	97.783	2	0.00075097	84722	160511_QHF_FH_JSI12i_3	78.096	63.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56491	1898	53203	342874	462339	462339			1	
VSCLGVTDDGMAVATGSWDSFLK	1	Unmodified	2415.1086	0.10864711	2032;2030	P62873;P62879	GNB1;GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	no	no	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	101.3	101.22	3	1.4142E-14	91767	160511_QHF_FH_JSI12i_1	113.78	95.792			0.79575	0.89375	25.519	2	0	Median	NaN	NaN	NaN	0	0	Median	0.62081	0.74619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.02	1.0705	NaN	1	0	Median	248530000	138630000	109900000	0	0	0	126640000	80431000	46211000	0	0	0	121890000	58203000	63688000	56492	2030;2032	53204	342875;342876	462340;462341	462340			1	
VSCQKVITHK	2	Acetyl (K)	1240.6598	0.65979168	652	O95180	CACNA1H	Voltage-dependent T-type calcium channel subunit alpha-1H	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	66.516	56.763	3	0.012296	30714	160513_QHF_FH_JSI11Kac_6	38.634	27.729			0.87898	0.90375	16.982	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0479	1.0191	NaN	1	0	Median	0.73731	0.80149	NaN	1	0	Median	39965000	21212000	18754000	0	0	0	0	0	0	14249000	6650900	7598200	25716000	14561000	11155000	56493	652	53205	342877;342878	462342;462343;462344	462342	323		3	
VSDATGQMNLTK	1	Unmodified	1263.6129	0.61290107	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.22	5.53	5		1			3				4	2	2	1	29.254	24.753	2	2.6824E-05	25092	160511_QHF_FH_JSI12i_1	125.74	87.654			1.0852	0.96972	46.221	9	1	Median	1.1452	0.95141	70.667	4	1	Median	0.65867	0.77834	6.6513	2	0	Median	1.0813	1.0414	0.20943	2	0	Median	1.0989	1.1689	NaN	1	0	Median	4338900000	2188400000	2150500000	1493100000	776610000	716530000	981440000	535530000	445910000	996990000	457980000	539000000	867300000	418260000	449040000	56494	1490	53206	342879;342880;342881;342882;342883;342884;342885;342886;342887	462345;462346;462347;462348;462349;462350;462351;462352;462353;462354;462355;462356;462357	462349			13	
VSDATGQMNLTK	1	Oxidation (M)	1279.6078	0.60781569	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	22.452	22.026	2	8.5497E-05	25004	160511_QHF_FH_JSI12i_1	97.734	77.972			0.95528	0.96405	49.427	6	0	Median	1.1233	0.91692	NaN	1	0	Median	1.0921	1.2802	33.019	2	0	Median	1.0529	1.0258	NaN	1	0	Median	0.51308	0.53932	57.191	2	0	Median	1124900000	577240000	547680000	126490000	54995000	71493000	395520000	218830000	176690000	319110000	125230000	193870000	283790000	178170000	105620000	56495	1490	53206	342888;342889;342890;342891;342892;342893;342894	462358;462359;462360;462361;462362;462363;462364;462365;462366;462367	462362		1174	10	
VSDFGGR	0	Unmodified	736.3504	0.35040244	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1.25	0.433	3	1									2	1	1	10.817	10.498	2	0.048713	8386	160511_QHF_FH_JSI10i_2	43.124	21.577			0.74373	0.83248	37.329	4	0	Median	NaN	NaN	NaN	0	0	Median	0.89859	1.079	3.1386	2	0	Median	0.5236	0.51178	NaN	1	0	Median	0.64905	0.65669	NaN	1	0	Median	451490000	274160000	177330000	0	0	0	251500000	133050000	118450000	85987000	60512000	25475000	114000000	80601000	33404000	56496	1293	53207	342895;342896;342897;342898	462368;462369	462369			2	
VSDGDWICPDK	1	Unmodified	1290.5551	0.55505184	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	3										1	1	1	44.68	44.193	2	0.029633	40197	160511_QHF_FH_JSI12i_1	39.917	33.314			0.95404	0.92682	24.054	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73766	0.83564	NaN	1	0	Median	0.95404	0.92682	NaN	1	0	Median	1.2646	1.3219	NaN	1	0	Median	114800000	51387000	63417000	0	0	0	31000000	16155000	14845000	45724000	20302000	25422000	38079000	14930000	23149000	56497	657	53208	342899;342900;342901	462370	462370			1	
VSDGGSSSTDFK	1	Unmodified	1185.515	0.51496116	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		13.939	13.493	2	0.00034061	10869	160511_QHF_FH_JSI9i_1	89.9	63.516			1.1271	0.93846	31.847	3	3	Median	1.1271	0.89953	NaN	1	1	Median	0.80317	0.93846	NaN	1	1	Median	1.6171	1.5931	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	775280000	352020000	423260000	248210000	115690000	132510000	347100000	181350000	165740000	179980000	54975000	125000000	0	0	0	56498	3290	53209	342902;342903;342904;342905	462371;462372;462373;462374	462373			4	
VSDILHSIFSSYK	1	Unmodified	1494.7718	0.77184455	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.06	5.75		3	9						4	5	4	3	4	85.002	82.319	2;3	8.7361E-31	73374	160511_QHF_FH_JSI12i_3	191.52	154.32			1.0117	0.95418	26.576	15	1	Median	1.1881	1.0102	5.7526	4	0	Median	0.81139	0.90272	3.4792	4	0	Linear	1.0305	0.97041	2.1804	3	0	Plateau	0.79157	0.79579	48.232	4	1	Linear	6052400000	3089500000	2963000000	1232200000	573960000	658270000	1259700000	736930000	522720000	1401800000	681440000	720360000	2158800000	1097100000	1061600000	56499	127	53210	342906;342907;342908;342909;342910;342911;342912;342913;342914;342915;342916;342917;342918;342919;342920;342921	462375;462376;462377;462378;462379;462380;462381;462382;462383;462384;462385;462386;462387;462388;462389;462390;462391;462392;462393;462394;462395;462396;462397;462398;462399;462400;462401;462402;462403;462404;462405;462406;462407;462408;462409;462410;462411;462412	462409			38	
VSDILHSIFSSYKEK	2	Acetyl (K)	1793.92	0.91996535	127	O00410	IPO5	Importin-5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.934	76.615	3	5.022E-05	42510	160513_QHF_FH_JSI11Kac_6	94.454	81.828			0.26026	0.25037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26026	0.25037	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	106200000	82140000	24062000	0	0	0	0	0	0	106200000	82140000	24062000	0	0	0	56500	127	53211	342922	462413	462413	84		1	
VSDSISAQYPVVDHEFDAVVVGAGGAGLR	0	Unmodified	2914.4461	0.44610032	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.381	3	14								5	4	4	4	93.377	92.992	3;4	4.101E-45	80209	160511_QHF_FH_JSI12i_2	188.41	182.69			0.83851	0.89939	21.616	15	9	Median	1.0937	0.93599	18.493	4	2	Median	0.73321	0.86392	19.468	4	2	Median	0.8733	0.87197	34.775	3	2	Plateau	0.79457	0.83779	13.71	4	3	Median	938950000	571730000	367220000	155530000	73983000	81543000	271390000	185670000	85716000	267970000	160220000	107750000	244070000	151860000	92212000	56501	1367	53212	342923;342924;342925;342926;342927;342928;342929;342930;342931;342932;342933;342934;342935;342936;342937;342938;342939	462414;462415;462416;462417;462418;462419;462420;462421;462422;462423;462424;462425;462426;462427;462428;462429;462430;462431;462432;462433;462434;462435;462436	462416			23	
VSDYEMK	1	Unmodified	870.37932	0.3793193	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	14.985	14.556	2	0.0093035	12207	160511_QHF_FH_JSI12i_1	83.753	48.259			2.1415	2.2857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1415	2.2857	NaN	1	1	Median	1374800000	520830000	853990000	0	0	0	0	0	0	0	0	0	1374800000	520830000	853990000	56502	1010	53213	342940	462437	462437			1	
VSEEAESQQQWDTSK	1	Unmodified	1750.7646	0.76458692	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.021	25.453	2	7.1865E-10	22543	160511_QHF_FH_JSI12i_1	148.62	143.12			0.55483	0.53374	28.932	4	3	Median	0.55128	0.4487	NaN	1	1	Median	0.55841	0.63307	NaN	1	1	Median	0.46818	0.45	NaN	1	1	Median	0.76624	0.81406	NaN	1	0	Median	116650000	68833000	47817000	18406000	12336000	6069500	22556000	15047000	7508700	25761000	18598000	7162900	49928000	22852000	27076000	56503	2162	53214	342941;342942;342943;342944	462438;462439;462440;462441	462439			4	
VSEEIEDIIK	1	Unmodified	1173.6129	0.61288429	494	O75223	GGCT	Gamma-glutamylcyclotransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								2	2	1	1	60.864	60.132	2	2.2417E-06	54397	160511_QHF_FH_JSI10i_1	111.61	90.705			1.0301	0.98138	28.963	6	0	Median	1.5346	1.2877	53.166	2	0	Median	0.91142	1.0868	19.834	2	0	Median	1.0342	1.0196	NaN	1	0	Median	0.83782	0.89667	NaN	1	0	Median	1553100000	781480000	771580000	362860000	163730000	199130000	418390000	223740000	194650000	402780000	217130000	185650000	369020000	176870000	192150000	56504	494	53215	342945;342946;342947;342948;342949;342950	462442;462443;462444;462445;462446;462447;462448;462449;462450;462451	462447			10	
VSEFNVSSEGSGEK	1	Unmodified	1454.6525	0.65251728	4472	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	6									2	2	2		29.558	28.952	2	0.0025026	25636	160511_QHF_FH_JSI10i_1	70.089	54.199			0.82816	0.87212	25.538	6	6	Median	0.89657	0.74711	35.055	2	2	Median	0.79579	0.93872	23.581	2	2	Median	0.89972	0.86189	30.721	2	2	Median	NaN	NaN	NaN	0	0	Median	232790000	122380000	110410000	67181000	32445000	34736000	92482000	51586000	40895000	73130000	38352000	34778000	0	0	0	56505	4472	53216	342951;342952;342953;342954;342955;342956	462452;462453;462454;462455;462456;462457	462454			6	
VSEGGPAEIAGLQIGDK	1	Unmodified	1639.8417	0.84171503	216	O14907	TAX1BP3	Tax1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	64.946	64.294	2;3	1.3928E-06	57041	160511_QHF_FH_JSI9i_1	155.17	136.39			0.94357	0.99992	9.1479	7	0	Median	1.2721	1.0739	3.6113	2	0	Median	0.93141	1.0662	NaN	1	0	Median	0.99908	0.9631	5.3058	2	0	Median	0.85645	0.88841	5.0543	2	0	Median	587150000	300540000	286610000	114320000	52922000	61395000	117430000	63524000	53904000	180970000	86428000	94539000	174440000	97667000	76775000	56506	216	53217	342957;342958;342959;342960;342961;342962;342963	462458;462459;462460	462460			3	
VSEGVEQFEDIWQK	1	Unmodified	1692.7995	0.79951586	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	81.194	80.282	2;3	0.00079186	69364	160511_QHF_FH_JSI12i_2	66.262	42.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56507	488	53218	342964;342965	462461;462462	462461			2	
VSEHVGSR	0	Unmodified	869.43553	0.43552905	3685;3907	Q8TAQ2;Q92922	SMARCC2;SMARCC1	SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.5	4.94		7	3					1	1	2	2	4	4	5.3034	3.5234	2;3	0.0049316	2836	160511_QHF_FH_JSI11i_3	38.302	31.179			0.9361	0.9238	28.379	12	0	Median	1.4183	1.1844	59.848	2	0	Median	0.82505	1.0197	21.732	2	0	Median	1.0252	0.99812	29.639	4	0	Median	0.83386	0.88926	15.447	4	0	Median	2648800000	1390900000	1257900000	174190000	90443000	83747000	540100000	294280000	245820000	927050000	473610000	453440000	1007500000	532610000	474880000	56508	3685;3907	53219	342966;342967;342968;342969;342970;342971;342972;342973;342974;342975;342976;342977	462463;462464;462465;462466;462467;462468;462469	462463			7	
VSEMSSFQR	0	Unmodified	1069.4862	0.48624399	707	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.383	24.03	2	0.01597	19995	160511_QHF_FH_JSI11i_2	53.968	33.413			0.99526	1.0145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99526	1.0145	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	194380000	98494000	95888000	0	0	0	0	0	0	194380000	98494000	95888000	0	0	0	56509	707	53220	342978	462470	462470			1	
VSENDFEDLLSNQGFSSR	0	Unmodified	2042.9181	0.91812745	229	O14976	GAK	Cyclin-G-associated kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	86.734	86.248	2	0.0056698	78556	160511_QHF_FH_JSI12i_1	48.704	25.825			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56510	229	53221	342979	462471	462471			1	
VSEPLLWELFLQAGPVVNTHMPK	1	Unmodified	2604.3774	0.37741581	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.61		2	3						7	2	2	4	4	99.654	94.505	3;4	3.2208E-39	50509	160513_QHF_FH_JSI11Kac_6	174.7	156			0.92279	0.93474	18.848	12	1	Median	1.2493	1.082	7.9516	2	0	Median	0.73393	0.90145	22.385	2	0	Median	0.94557	0.8938	8.1754	4	0	Median	1.0648	1.0994	25.925	4	1	Linear	3733000000	1945900000	1787100000	403950000	193590000	210360000	577810000	327670000	250140000	953360000	484790000	468570000	1797900000	939870000	858030000	56511	2671	53222	342980;342981;342982;342983;342984;342985;342986;342987;342988;342989;342990;342991	462472;462473;462474;462475;462476;462477;462478;462479;462480;462481;462482;462483;462484;462485;462486	462474			13	
VSEPLLWELFLQAGPVVNTHMPK	1	Oxidation (M)	2620.3723	0.37233044	2671	Q15427	SF3B4	Splicing factor 3B subunit 4	yes	yes	0	0	1	0				By MS/MS	9.5	6.5			1						1				2	99.592	94.876	3	8.6566E-14	47913	160513_QHF_FH_JSI12Kac_6	107.9	70.812			0.99539	1.0185	8.5932	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99539	1.0185	8.5932	2	1	Median	398200000	146880000	251320000	0	0	0	0	0	0	0	0	0	398200000	146880000	251320000	56512	2671	53222	342992;342993	462487;462488;462489	462488		2094	3	
VSEQGLIEILK	1	Unmodified	1227.7075	0.70745338	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	2	1	78.79	78.059	2	4.0343E-07	69013	160511_QHF_FH_JSI9i_2	117.7	99.879			0.8797	0.90663	4.1548	7	1	Median	1.1259	0.94013	4.641	2	1	Median	0.74842	0.89999	3.3066	2	0	Median	0.88861	0.8784	4.4737	2	0	Median	0.82054	0.88716	NaN	1	0	Median	1135100000	573270000	561850000	221650000	104430000	117210000	362780000	205200000	157580000	310780000	149320000	161460000	239920000	114310000	125610000	56513	196	53223	342994;342995;342996;342997;342998;342999;343000	462490;462491;462492;462493;462494;462495;462496;462497;462498;462499;462500;462501;462502;462503;462504;462505	462499			16	
VSEQGLIEILKK	2	Unmodified	1355.8024	0.8024164	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		6	9							2	4	5	4	70.633	70.018	2;3	9.961E-07	60373	160511_QHF_FH_JSI12i_3	122.45	75.855			0.64867	0.63308	11.558	7	7	Median	0.75887	0.63308	NaN	1	1	Median	0.5097	0.60687	5.6022	2	2	Median	0.64702	0.64352	6.9481	2	2	Median	0.77327	0.77762	4.4238	2	2	Median	989210000	501070000	488140000	68196000	37564000	30632000	129580000	78019000	51565000	231220000	115080000	116130000	560210000	270400000	289810000	56514	196	53224	343001;343002;343003;343004;343005;343006;343007;343008;343009;343010;343011;343012;343013;343014;343015	462506;462507;462508;462509;462510;462511;462512;462513;462514;462515;462516;462517;462518;462519;462520	462517			15	
VSEVKPTYR	1	Unmodified	1077.5819	0.58185894	2152	Q00577	PURA	Transcriptional activator protein Pur-alpha	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		12.757	12.757	3	0.046194	10272	160511_QHF_FH_JSI11i_3	26.673	5.8027			1.1204	1.0513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1204	1.0513	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214990000	95521000	119470000	0	0	0	0	0	0	214990000	95521000	119470000	0	0	0	56515	2152	53225	343016	462521;462522	462522			2	
VSEYVPEIVNFVQK	1	Unmodified	1649.8665	0.86647322	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	1	3	1	88.949	88.313	2;3	2.0463E-13	77803	160511_QHF_FH_JSI11i_2	122.45	110.53			1.0056	1.031	24.157	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2774	1.223	NaN	1	0	Median	0.79157	0.86909	NaN	1	0	Median	47599000	19870000	27728000	0	0	0	0	0	0	25594000	9455500	16138000	22005000	10415000	11590000	56516	1665	53226	343017;343018;343019;343020;343021;343022	462523;462524;462525;462526;462527	462526			5	
VSFADPIYQAGLADDIDRR	0	Unmodified	2121.0491	0.049082043	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	80.612	79.686	3	0.010724	71066	160511_QHF_FH_JSI11i_3	30.152	15.382			0.5312	0.50444	0.88565	2	2	Median	0.58001	0.5013	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4865	0.50761	NaN	1	1	Median	40542000	21884000	18658000	23827000	12462000	11365000	0	0	0	0	0	0	16714000	9421600	7292900	56517	2977	53227	343023;343024;343025	462528;462529;462530	462528			3	
VSFELFADK	1	Unmodified	1054.5335	0.53351176	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.52	6.61	5	7	5				1	6	5	5	8	7	9	75.908	71.685	1;2	1.1463E-05	60184	160511_QHF_FH_JSI9i_3	110.87	77.075			1.0706	1.0794	13.57	28	4	Median	1.2733	1.085	5.4268	5	0	Median	0.90856	1.056	18.695	8	0	Median	1.0706	1.0575	7.0378	6	1	Median	1.0992	1.1649	15.718	9	3	Median	36273000000	15683000000	20590000000	4663700000	1974000000	2689800000	7091500000	3374100000	3717300000	9035400000	3805800000	5229600000	15482000000	6529100000	8952900000	56518	2040	53228	343026;343027;343028;343029;343030;343031;343032;343033;343034;343035;343036;343037;343038;343039;343040;343041;343042;343043;343044;343045;343046;343047;343048;343049;343050;343051;343052;343053;343054	462531;462532;462533;462534;462535;462536;462537;462538;462539;462540;462541;462542;462543;462544;462545;462546;462547;462548;462549;462550;462551;462552;462553;462554;462555;462556;462557;462558;462559;462560;462561;462562;462563;462564;462565;462566;462567;462568;462569;462570;462571;462572;462573;462574;462575;462576;462577;462578;462579;462580;462581;462582;462583;462584;462585;462586;462587;462588;462589	462561			59	
VSFELFADKVPK	2	Unmodified	1378.7497	0.74965254	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	4.69		2	4						1	3	2	1	1	74.484	72.572	3	6.3786E-05	64624	160511_QHF_FH_JSI9i_2	83.617	69.264			0.46274	0.5688	96.392	7	1	Median	0.33408	0.27851	66.494	3	1	Plateau	0.47056	0.56957	0.19044	2	0	Median	0.76161	0.70464	NaN	1	0	Median	1.493	1.537	NaN	1	0	Median	648750000	351590000	297150000	133320000	109200000	24121000	126970000	91873000	35093000	112600000	58738000	53858000	275860000	91781000	184080000	56519	2040	53229	343055;343056;343057;343058;343059;343060;343061	462590;462591;462592;462593;462594;462595;462596;462597;462598;462599;462600;462601;462602;462603;462604	462597			15	
VSFELFADKVPK	2	Acetyl (K)	1420.7602	0.76021723	2040	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.433								3	9	2	2	5	3	86.534	77.608	2;3	8.9141E-19	40481	160513_QHF_FH_JSI11Kac_5	152.62	141.79			0.51078	0.54384	103.07	10	3	Median	0.98337	0.85105	NaN	1	0	Median	1.3677	1.607	NaN	1	1	Median	0.44108	0.44128	147.05	5	2	Median	0.54183	0.57051	9.7083	3	0	Median	535450000	344770000	190690000	47966000	26976000	20990000	120730000	76534000	44199000	287930000	188740000	99189000	78830000	52521000	26308000	56520	2040	53229	343062;343063;343064;343065;343066;343067;343068;343069;343070;343071;343072;343073	462605;462606;462607;462608;462609;462610;462611;462612;462613;462614;462615;462616;462617;462618	462609	2101;2102		13	
VSFGVSEQQAVEAWEK	1	Unmodified	1792.8632	0.86317875	5603	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		76.401	75.699	2	0.0054623	66473	160511_QHF_FH_JSI11i_2	52.576	37.885			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56521	5603	53230	343074;343075	462619;462620	462620			2	
VSFSKSTI	1	Acetyl (K)	909.48075	0.48074791	1281;724;5363	P26599;O95758;Q9UKA9	PTBP1;PTBP3;PTBP2	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3;Polypyrimidine tract-binding protein 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	12.6	0.484					3	5					5	1	2	70.052	60.677	2	0.0015977	30438	160513_QHF_FH_JSI10Kac_3	91.906	81.919			0.87149	0.96908	74.047	6	0	Median	NaN	NaN	NaN	0	0	Median	1.1184	1.3238	31.71	3	0	Median	0.28808	0.28573	NaN	1	0	Median	0.57449	0.60097	40.553	2	0	Median	101380000	65311000	36073000	0	0	0	32160000	16468000	15692000	44662000	34414000	10249000	24561000	14429000	10131000	56522	1281;724;5363	53231	343076;343077;343078;343079;343080;343081;343082;343083	462621;462622;462623;462624;462625;462626;462627;462628	462627	360		8	
VSFSYAGLSGDDPDLGPAHVVTVIAR	0	Unmodified	2642.334	0.33403068	4423	Q9BTV4	TMEM43	Transmembrane protein 43	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		2	3						1	1	3	1	1	94.224	92.366	3	1.7598E-34	43031	160513_QHF_FH_JSI9Kac_6	152.41	144.23			1.0523	0.90093	21.879	5	1	Median	1.0523	0.90093	NaN	1	0	Median	0.90972	1.0917	38.472	2	1	Median	1.0746	1.0458	NaN	1	0	Median	0.89719	0.88408	NaN	1	0	Median	229570000	107980000	121600000	88763000	36465000	52298000	32052000	18104000	13948000	63030000	32109000	30921000	45729000	21298000	24431000	56523	4423	53232	343084;343085;343086;343087;343088;343089	462629;462630;462631;462632;462633;462634;462635;462636;462637;462638	462635			10	
VSFTGSVPTGMK	1	Unmodified	1209.6064	0.60635913	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	5.21	3	4	4				1	2		4	3	5	2	54.398	51.402	2	2.42E-07	44479	160511_QHF_FH_JSI11i_2	130.98	117.95			1.0769	1.0822	17.896	14	6	Median	1.2084	1.0027	23.946	4	1	Median	0.79265	0.92545	19.113	3	2	Median	1.0931	1.0979	15.796	5	2	Median	1.084	1.1382	8.7681	2	1	Median	3699300000	1821000000	1878400000	717320000	342860000	374460000	997780000	577500000	420280000	1246400000	583840000	662520000	737850000	316750000	421100000	56524	1645	53233	343090;343091;343092;343093;343094;343095;343096;343097;343098;343099;343100;343101;343102;343103	462639;462640;462641;462642;462643;462644;462645;462646;462647;462648;462649;462650;462651;462652;462653;462654;462655;462656	462653			18	
VSFYQLSHFLQCK	1	Unmodified	1655.813	0.81299786	1103	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	86.903	81.882	3	3.8044E-17	40375	160513_QHF_FH_JSI12Kac_6	137.68	121.84			0.98226	1.0427	21.178	7	1	Median	1.1888	0.99486	24.103	2	1	Median	0.94948	1.1038	8.0434	2	0	Median	0.78981	0.73917	3.611	2	0	Median	1.0807	1.1248	NaN	1	0	Median	956390000	501940000	454450000	139330000	59253000	80073000	405140000	216240000	188900000	290250000	170370000	119890000	121670000	56086000	65586000	56525	1103	53234	343104;343105;343106;343107;343108;343109;343110	462657;462658;462659;462660;462661;462662;462663;462664;462665;462666;462667;462668;462669	462668			12	
VSGAGFSPSSK	1	Unmodified	1022.5033	0.50327426	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				19.51	18.616	2	0.042273	15783	160511_QHF_FH_JSI9i_2	45.022	24.502			1.1701	0.99843	NaN	1	1	Median	1.1701	0.99843	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29860000	14778000	15082000	29860000	14778000	15082000	0	0	0	0	0	0	0	0	0	56526	4581	53235	343111	462670	462670			1	
VSGAQEMVSSAK	1	Unmodified	1192.5758	0.57578728	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				2	2	2	1	25.544	22.653	2	2.2055E-05	19339	160511_QHF_FH_JSI9i_1	110.66	75.941			1.1614	1.1805	32.454	7	0	Linear	1.0043	0.84333	4.9656	2	0	Median	0.79968	0.95465	34.253	2	0	Median	0.67683	0.65785	38.398	2	0	Median	1.264	1.3442	NaN	1	0	Median	3102100000	1282300000	1819800000	815920000	290340000	525580000	692840000	332240000	360600000	622570000	206320000	416250000	970750000	453430000	517330000	56527	434	53236	343112;343113;343114;343115;343116;343117;343118	462671;462672;462673;462674;462675;462676;462677;462678;462679;462680	462677			10	
VSGAQEMVSSAK	1	Oxidation (M)	1208.5707	0.5707019	434	O60664	PLIN3	Perilipin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	23.311	22.634	2	2.9855E-05	19364	160511_QHF_FH_JSI9i_1	111.63	75.296			0.68644	0.63222	48.56	5	0	Median	1.1218	0.91957	68.215	2	0	Median	0.54196	0.63222	NaN	1	0	Median	0.84569	0.83622	NaN	1	0	Median	0.39368	0.40911	NaN	1	0	Median	894430000	495310000	399120000	258920000	119330000	139590000	211110000	119160000	91952000	229990000	115580000	114410000	194410000	141230000	53174000	56528	434	53236	343119;343120;343121;343122;343123	462681;462682;462683;462684	462684		169	4	
VSGELFAQAPVEQYPGIAVETVTDSSR	0	Unmodified	2849.4083	0.40831783	3613	Q8NC96	NECAP1	Adaptin ear-binding coat-associated protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			98.293	98.3	3	6.9993E-06	89152	160511_QHF_FH_JSI10i_1	58.722	51.691			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56529	3613	53237	343124	462685	462685			1	
VSGETDLSK	1	Unmodified	934.46074	0.46074075	193	O14732	IMPA2	Inositol monophosphatase 2	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	1	0	3									1	1		1	12.521	12.006	2	0.012251	9393	160511_QHF_FH_JSI9i_1	47.869	21.485			0.66776	0.79565	28.347	3	0	Median	1.1891	0.98006	NaN	1	0	Median	0.66776	0.79565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.52722	0.55937	NaN	1	0	Median	614700000	324390000	290310000	218340000	104730000	113610000	188850000	94505000	94340000	0	0	0	207510000	125160000	82354000	56530	193	53238	343125;343126;343127	462686;462687	462686			2	
VSGGLEVLAEK	1	Unmodified	1100.6077	0.60773933	1487	P39687;O43423	ANP32A;ANP32C	Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	2	2	50.598	49.69	2	2.1065E-05	43893	160511_QHF_FH_JSI10i_2	102.53	78.501			0.95498	0.92759	9.0296	7	0	Median	1.1293	0.94238	7.5537	2	0	Median	0.72356	0.87075	8.9426	2	0	Median	0.95024	0.95772	5.6614	2	0	Median	0.95792	1.0817	NaN	1	0	Median	4673400000	2289000000	2384400000	655650000	309630000	346020000	1480400000	807020000	673410000	1724000000	764130000	959900000	813340000	408260000	405080000	56531	1487	53239	343128;343129;343130;343131;343132;343133;343134;343135	462688;462689;462690;462691;462692;462693;462694;462695;462696;462697;462698;462699	462698			12	
VSGGPSLEQR	0	Unmodified	1028.5251	0.52507234	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	1	2	17.296	16.664	2	0.00168	13875	160511_QHF_FH_JSI9i_2	64.42	37.283			0.76617	0.88534	21.225	7	0	Median	0.91524	0.77157	34.782	2	0	Median	0.7718	0.92973	6.9198	2	0	Median	0.76617	0.7523	NaN	1	0	Median	0.82287	0.89567	29.911	2	0	Median	1182700000	683260000	499490000	264200000	136070000	128140000	327820000	191960000	135850000	223440000	131460000	91978000	367290000	223770000	143520000	56532	5494	53240	343136;343137;343138;343139;343140;343141;343142	462700;462701;462702;462703	462702			4	
VSGGVDMSSHQEVFASLFHK	1	Unmodified	2161.0262	0.026238111	2787	Q27J81	INF2	Inverted formin-2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	72.978	72.831	4	1.0628E-11	63169	160511_QHF_FH_JSI12i_3	135.04	125.39			0.88531	0.8708	8.9395	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98868	0.92762	NaN	1	0	Median	0.79274	0.81746	NaN	1	0	Median	175970000	98009000	77958000	0	0	0	0	0	0	58471000	32567000	25904000	117500000	65442000	52054000	56533	2787	53241	343143;343144	462704;462705	462704			2	
VSGHVITDIVEGK	1	Unmodified	1352.73	0.72997974	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	3.54		8	5						1	3	5	3	3	52.031	51.102	2;3	2.2702E-05	44969	160511_QHF_FH_JSI11i_3	120.57	109.42			1.1248	1.1377	19.704	12	3	Median	1.3262	1.123	1.9282	2	1	Median	0.81562	0.99957	14.551	4	1	Linear	1.2709	1.2227	19.726	3	1	Median	0.99999	1.0314	13.855	3	0	Plateau	1195000000	554470000	640480000	151490000	69693000	81794000	264720000	147710000	117010000	367080000	158810000	208280000	411660000	178260000	233400000	56534	1837	53242	343145;343146;343147;343148;343149;343150;343151;343152;343153;343154;343155;343156;343157;343158	462706;462707;462708;462709;462710;462711;462712;462713;462714;462715;462716;462717;462718;462719;462720;462721;462722;462723	462707			18	
VSGHVITDIVEGKK	2	Unmodified	1480.8249	0.82494275	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	1	By MS/MS	By matching	By matching	By MS/MS	3	0			4							1	1	1	1	45.65	44.797	3;4	2.2231E-05	37083	160511_QHF_FH_JSI9i_3	112.42	101.16			1.2363	1.1345	23.286	4	0	Median	1.4318	1.1628	NaN	1	0	Median	0.90327	1.0417	NaN	1	0	Median	1.8727	1.7415	NaN	1	0	Median	1.0675	1.107	NaN	1	0	Median	377880000	159220000	218660000	78714000	27862000	50852000	68254000	37507000	30747000	116390000	36300000	80095000	114520000	57554000	56965000	56535	1837	53243	343159;343160;343161;343162	462724;462725	462724			1	
VSGISFPTTELLR	0	Unmodified	1418.7769	0.77692993	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.299	84.598	2	0.00028277	74559	160511_QHF_FH_JSI9i_2	100.48	82.165			0.40739	0.42217	27.778	4	4	Median	0.37218	0.31835	NaN	1	1	Median	0.29413	0.36152	NaN	1	1	Median	0.58305	0.58293	NaN	1	1	Median	0.44592	0.493	NaN	1	1	Median	340130000	226290000	113840000	65728000	40147000	25581000	77147000	58303000	18845000	119850000	75960000	43886000	77411000	51881000	25531000	56536	4495	53244	343163;343164;343165;343166	462726;462727;462728;462729	462727			4	
VSGLAGSIYR	0	Unmodified	1021.5556	0.55564418	404	O60271;Q9UPT6	SPAG9;MAPK8IP3	C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.07	38.89	2	0.00017223	33157	160511_QHF_FH_JSI12i_3	82.75	62.269			0.85822	0.87339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85822	0.87339	NaN	1	0	Median	108650000	64527000	44126000	0	0	0	0	0	0	0	0	0	108650000	64527000	44126000	56537	404	53245	343167;343168	462730;462731	462731			2	
VSGLGEK	1	Unmodified	688.37555	0.37555455	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				10.722	9.9334	2	0.034446	7445	160511_QHF_FH_JSI9i_1	50.127	7.003			1.1004	0.90561	NaN	1	0	Median	1.1004	0.90561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	580120000	248890000	331230000	580120000	248890000	331230000	0	0	0	0	0	0	0	0	0	56538	1192	53246	343169	462732	462732			1	
VSGLLVLDYSK	1	Unmodified	1192.6703	0.67033959	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.53	6.67	2	4	3					2	4	3	3	4	5	75.396	71.352	2	4.3792E-07	37772	160513_QHF_FH_JSI11Kac_6	110.39	97.35			0.9078	0.91138	13.506	15	0	Median	1.1042	0.91138	14.399	3	0	Median	0.666	0.84576	7.3774	3	0	Plateau	0.98763	0.97321	18.681	4	0	Median	0.9078	0.98564	8.8459	5	0	Median	2448600000	1281200000	1167500000	430750000	208670000	222080000	857430000	504020000	353400000	697120000	324020000	373100000	463350000	244470000	218890000	56539	1372	53247	343170;343171;343172;343173;343174;343175;343176;343177;343178;343179;343180;343181;343182;343183;343184	462733;462734;462735;462736;462737;462738;462739;462740;462741;462742;462743;462744;462745;462746;462747;462748;462749;462750;462751;462752;462753;462754;462755;462756;462757	462738			25	
VSGLQGSDALNIQQNQTSGGSLQAGQQK	1	Unmodified	2813.3904	0.39037636	889	P08047	SP1	Transcription factor Sp1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	55.438	54.829	3	7.9095E-33	49829	160511_QHF_FH_JSI12i_1	153.82	147.53			1.1738	1.1209	7.5045	5	2	Median	1.232	1.0215	NaN	1	0	Median	0.94214	1.1209	NaN	1	0	Median	1.1482	1.1003	7.0156	2	2	Median	1.1738	1.2296	NaN	1	0	Median	660310000	329360000	330950000	160710000	75606000	85109000	124190000	68667000	55526000	213460000	102610000	110850000	161940000	82475000	79466000	56540	889	53248	343185;343186;343187;343188;343189	462758;462759;462760;462761;462762;462763;462764;462765	462761			8	
VSGNPQVHIKNVK	2	Acetyl (K)	1460.81	0.80996139	1576	P46013	MKI67	Antigen KI-67	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.617	30.073	3	0.027318	16632	160513_QHF_FH_JSI11Kac_6	37.954	30.914			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56541	1576	53249	343190	462766	462766			1	
VSGPDLDLNLK	1	Unmodified	1169.6292	0.62920306	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	62.949	62.092	2	0.00025223	56288	160511_QHF_FH_JSI11i_1	85.355	57.612			1.1519	1.0694	1.6317	2	0	Median	1.3344	1.0818	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9944	1.0571	NaN	1	0	Median	470520000	243900000	226610000	181450000	84732000	96715000	0	0	0	0	0	0	289070000	159170000	129900000	56542	2286	53250	343191;343192;343193	462767;462768;462769;462770;462771	462767			5	
VSGPLSGNSANHHADNPR	0	Unmodified	1828.8565	0.85647067	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				13.048	12.156	4	0.041168	9584	160511_QHF_FH_JSI9i_3	16.615	10.711			0.95166	0.76172	NaN	1	0	Median	0.95166	0.76172	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29789000	10358000	19431000	29789000	10358000	19431000	0	0	0	0	0	0	0	0	0	56543	3063	53251	343194	462772	462772			0	
VSGQGLHEGHTFEPAEFIIDTR	0	Unmodified	2439.1819	0.18188713	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.56	3.04		3	14						1		4	10	4	71.772	71.156	3;4	1.0896E-16	62876	160511_QHF_FH_JSI11i_3	140.41	124.93			1.1072	1.0677	16.614	15	5	Median	NaN	NaN	NaN	0	0	Median	1.0113	1.2407	13.133	3	1	Plateau	1.1291	1.0793	20.332	8	2	Median	0.86669	0.89824	8.9057	4	2	Linear	2172100000	1046300000	1125800000	0	0	0	97817000	53581000	44236000	1322300000	618650000	703680000	751990000	374080000	377910000	56544	1192	53252	343195;343196;343197;343198;343199;343200;343201;343202;343203;343204;343205;343206;343207;343208;343209;343210;343211;343212	462773;462774;462775;462776;462777;462778;462779;462780;462781;462782;462783;462784;462785;462786;462787;462788;462789;462790;462791;462792;462793;462794;462795;462796;462797;462798;462799;462800	462775			27	
VSGQPQSVTASSDK	1	Unmodified	1389.6736	0.67358707	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	13.733	13.296	2	3.126E-07	10711	160511_QHF_FH_JSI9i_1	90.793	59.299			1.2368	1.0826	16.021	4	4	Linear	1.1681	0.97538	NaN	1	1	Median	1.1095	1.2936	NaN	1	1	Median	1.2316	1.2016	NaN	1	1	Median	0.89688	0.92817	NaN	1	1	Median	534120000	254990000	279130000	148000000	67683000	80318000	148490000	84537000	63955000	142280000	58509000	83774000	95339000	44261000	51078000	56545	3561	53253	343213;343214;343215;343216;343217	462801;462802;462803;462804;462805	462805			5	
VSGQVQALQNHYR	0	Unmodified	1498.7641	0.76407383	128	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			26.343	25.051	3	2.8779E-05	20720	160511_QHF_FH_JSI10i_3	87.719	73.158			1.2277	1.4017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2277	1.4017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36448000	14243000	22205000	0	0	0	36448000	14243000	22205000	0	0	0	0	0	0	56546	128	53254	343218	462806	462806			1	
VSGSELVQK	1	Unmodified	945.51311	0.51311067	1984	P62195	PSMC5	26S protease regulatory subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	21.396	20.744	2	0.0049801	17848	160511_QHF_FH_JSI10i_1	65.246	44.092			1.0621	1.0746	41.637	3	1	Plateau	1.113	0.90111	NaN	1	0	Median	0.41713	0.49489	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0621	1.1018	NaN	1	0	Median	1161300000	612840000	548490000	406420000	179690000	226730000	260770000	173230000	87548000	0	0	0	494130000	259920000	234210000	56547	1984	53255	343219;343220;343221	462807;462808;462809	462808			3	
VSGSFPEDSSK	1	Unmodified	1138.5142	0.51423288	288	O15400	STX7	Syntaxin-7	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				20.643	19.485	2	0.0096419	16456	160511_QHF_FH_JSI9i_1	48.284	37.12			1.3459	1.1362	NaN	1	0	Median	1.3459	1.1362	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30361000	15674000	14688000	30361000	15674000	14688000	0	0	0	0	0	0	0	0	0	56548	288	53256	343222	462810	462810			1	
VSGSINMLSLTQGLFR	0	Unmodified	1721.9134	0.91344018	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			92.836	87.116	2	2.7998E-07	49939	160513_QHF_FH_JSI10Kac_6	162.93	138.07			0.59619	0.70944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59619	0.70944	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38493000	24671000	13822000	0	0	0	38493000	24671000	13822000	0	0	0	0	0	0	56549	2108	53257	343223;343224	462811;462812	462812			2	
VSGSQIVDIDK	1	Unmodified	1159.6085	0.60846762	1913	P60520	GABARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		42.137	41.358	2	0.0022845	37262	160511_QHF_FH_JSI11i_1	57.348	30.964			2.1083	1.8639	26.143	2	1	Median	2.807	2.2424	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5835	1.5493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126290000	42444000	83842000	41366000	9841000	31525000	0	0	0	84921000	32603000	52318000	0	0	0	56550	1913	53258	343225;343226;343227	462813;462814;462815	462813			3	
VSGSQVEVNDIK	1	Unmodified	1273.6514	0.65139506	467;3284	Q7Z6B7;O75044	SRGAP1;SRGAP2	SLIT-ROBO Rho GTPase-activating protein 1;SLIT-ROBO Rho GTPase-activating protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		31.159	30.548	2	0.00302	27305	160511_QHF_FH_JSI11i_1	67.879	46.029			2.1188	1.9264	30.615	3	3	Median	2.3509	1.9264	NaN	1	1	Median	0.98146	1.1798	NaN	1	1	Median	2.1188	2.0713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	178870000	74376000	104490000	58440000	17047000	41393000	64767000	34693000	30074000	55660000	22635000	33024000	0	0	0	56551	3284;467	53259	343228;343229;343230	462816;462817;462818	462816			3	
VSGTVQQLPAVHHVFQPELPAEPAAYWSK	1	Unmodified	3185.6298	0.62981877	1549	P42858	HTT	Huntingtin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		84.585	84.585	4	2.8591E-06	75504	160511_QHF_FH_JSI11i_3	50.088	47.531			1.0724	1.0071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0724	1.0071	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45807000	24730000	21077000	0	0	0	0	0	0	45807000	24730000	21077000	0	0	0	56552	1549	53260	343231	462819;462820;462821	462819			3	
VSGVDGYETEGIR	0	Unmodified	1380.6521	0.65212334	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	38.655	37.967	2	3.0059E-05	33983	160511_QHF_FH_JSI10i_1	118.28	97.758			0.96731	1.0435	5.4584	5	0	Median	1.2563	1.0435	NaN	1	0	Median	0.85926	1.032	3.5592	2	0	Median	0.96731	0.93513	NaN	1	0	Median	1.0005	1.0704	NaN	1	0	Median	1799400000	943030000	856320000	359940000	161940000	198000000	557650000	341010000	216640000	517390000	260460000	256930000	364380000	179630000	184750000	56553	2545	53261	343232;343233;343234;343235;343236	462822;462823;462824;462825;462826;462827;462828;462829	462826			8	
VSHDPFAQQRPYENFQNTEGK	1	Unmodified	2491.1516	0.15164963	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		42.48	42.48	4	0.0047556	37415	160511_QHF_FH_JSI11i_3	37.686	33.248			0.59971	0.55519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59971	0.55519	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86005000	49062000	36943000	0	0	0	0	0	0	86005000	49062000	36943000	0	0	0	56554	2437	53262	343237	462830	462830			1	
VSHIDVITAEMAK	1	Unmodified	1412.7334	0.73335055	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	51.673	50.696	2;3	4.6787E-05	44388	160511_QHF_FH_JSI9i_2	116.55	95.083			0.95439	0.95173	19.363	8	6	Median	0.90868	0.77561	8.1824	2	2	Median	0.88065	1.0702	15.886	2	2	Median	1.081	1.0719	17.522	2	2	Median	0.94386	1.0398	22.762	2	0	Median	772320000	398800000	373520000	110130000	61256000	48873000	246710000	126490000	120220000	260880000	142550000	118330000	154600000	68502000	86098000	56555	5479	53263	343238;343239;343240;343241;343242;343243;343244;343245	462831;462832;462833;462834;462835;462836;462837;462838;462839	462834			9	
VSHLLGINVTDFTR	0	Unmodified	1570.8467	0.84674083	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.01		5	8						5	5	6	3	4	75.504	72.694	2;3	9.3644E-24	38506	160513_QHF_FH_JSI10Kac_6	163.99	144.23			0.9581	0.98901	20.577	18	4	Median	1.3867	1.1146	32.204	5	0	Median	0.86125	0.99641	21.551	6	0	Median	1.0576	0.99575	3.3335	3	2	Median	0.9191	0.91622	13.954	4	2	Median	11486000000	5719200000	5766800000	1666600000	713520000	953070000	4901100000	2581400000	2319700000	2953800000	1429000000	1524800000	1964600000	995240000	969310000	56556	1436	53264	343246;343247;343248;343249;343250;343251;343252;343253;343254;343255;343256;343257;343258;343259;343260;343261;343262;343263	462840;462841;462842;462843;462844;462845;462846;462847;462848;462849;462850;462851;462852;462853;462854;462855;462856;462857;462858;462859;462860;462861;462862;462863;462864;462865;462866;462867;462868;462869;462870	462870			30	
VSHLSLISVER	0	Unmodified	1238.6983	0.69828568	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			53.332	44.748	3	0.00037721	24650	160513_QHF_FH_JSI10Kac_6	67.456	53.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56557	5472	53265	343264	462871	462871			1	
VSHQGYSTEAEFEEPR	0	Unmodified	1864.8228	0.8227705	1357	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							2	2	3	3	30.906	30.367	2;3	1.4351E-15	25481	160511_QHF_FH_JSI12i_3	156.67	152.71			1.0011	1.0115	12.262	9	3	Median	1.0859	0.93352	18.052	2	2	Median	0.76598	0.94755	NaN	1	0	Median	1.0934	1.0115	5.6832	3	1	Median	1.0011	1.0096	14.418	3	0	Plateau	562940000	273880000	289060000	66278000	27088000	39189000	66820000	37870000	28950000	203280000	96132000	107150000	226560000	112790000	113780000	56558	1357	53266	343265;343266;343267;343268;343269;343270;343271;343272;343273;343274	462872;462873;462874;462875;462876;462877;462878;462879;462880;462881;462882;462883;462884;462885	462883			14	
VSHQVAYGLHELLK	1	Unmodified	1592.8675	0.86747627	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	53.205	52.218	3;4	0.01115	43571	160511_QHF_FH_JSI9i_3	36.928	28.329			1.4042	1.2421	14.388	5	1	Median	1.5011	1.2131	5.677	2	1	Median	1.1166	1.2421	NaN	1	0	Median	1.4042	1.3066	NaN	1	0	Median	0.91133	0.91357	NaN	1	0	Median	272470000	149040000	123430000	49987000	25893000	24094000	20891000	12976000	7915500	77719000	38232000	39487000	123880000	71938000	51938000	56559	3838	53267	343275;343276;343277;343278;343279	462886;462887;462888;462889;462890	462888			4	
VSHSELRK	1	Acetyl (Protein N-term)	996.53524	0.53524309	2083	P78330	PSPH	Phosphoserine phosphatase	yes	yes	0	1	0	1		By MS/MS	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	10.419	10.014	3	0.0072359	7678	160511_QHF_FH_JSI11i_3	46.129	23.441			0.86711	0.88656	12.822	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.80915	1.0032	NaN	1	0	Median	0.92922	0.88656	NaN	1	0	Median	0.73483	0.77631	NaN	1	0	Median	169060000	94204000	74852000	0	0	0	69619000	39413000	30205000	83009000	44684000	38326000	16428000	10107000	6320800	56560	2083	53268	343280;343281;343282	462891;462892;462893	462892			3	
VSHSPALSSDVR	0	Unmodified	1253.6364	0.6364137	3021	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			16.095	15.425	3	0.046501	12968	160511_QHF_FH_JSI10i_2	20.857	11.17			0.59617	0.72954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59617	0.72954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32880000	20407000	12473000	0	0	0	32880000	20407000	12473000	0	0	0	0	0	0	56561	3021	53269	343283	462894	462894			1	
VSHVADTK	1	Unmodified	855.44503	0.4450311	5436	Q9UNF1	MAGED2	Melanoma-associated antigen D2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	5.9		6	1					3		2	1	4	3	5.7768	2.7089	2;3	0.0033399	1428	160513_QHF_FH_JSI9Kac_5	57.859	43.701			1.0397	0.96367	29.202	10	1	Median	1.3329	1.1278	35.493	2	1	Median	1.0513	1.3191	NaN	1	0	Median	0.96218	0.96367	28.422	4	0	Median	0.74614	0.83935	39.333	3	0	Median	1710600000	868680000	841910000	265020000	108690000	156330000	299010000	135040000	163970000	770690000	424320000	346370000	375870000	200630000	175240000	56562	5436	53270	343284;343285;343286;343287;343288;343289;343290;343291;343292;343293	462895;462896;462897;462898;462899;462900;462901;462902;462903;462904	462896			10	
VSHVLAALQAGNR	0	Unmodified	1334.7419	0.74188183	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			44.968	36.074	3	1.3039E-06	19950	160513_QHF_FH_JSI10Kac_6	75.986	69.754			1.1804	1.1891	1.1695	2	0	Median	1.4032	1.199	NaN	1	0	Median	0.99304	1.1793	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55449000	32449000	23000000	21810000	11967000	9843300	33638000	20482000	13157000	0	0	0	0	0	0	56563	5616	53271	343294;343295	462905;462906;462907;462908	462908			4	
VSHVSTGGGASLELLEGK	1	Unmodified	1739.9054	0.90537792	775;866	P00558;P07205	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.64	5.55		9	19						8	6	7	10	13	55.303	52.553	2;3	1.6419E-183	44983	160511_QHF_FH_JSI12i_3	311.69	295.43			0.94788	0.97595	22.507	33	8	Median	1.1587	0.9852	3.3155	6	0	Median	0.80039	0.98426	15.199	7	2	Median	0.98351	0.9578	18.938	9	2	Median	0.88392	0.93672	33.764	11	4	Median	56064000000	24902000000	31162000000	3639100000	1522700000	2116400000	9057600000	5195200000	3862300000	17289000000	7183800000	10105000000	26078000000	11001000000	15078000000	56564	775;866	53272	343296;343297;343298;343299;343300;343301;343302;343303;343304;343305;343306;343307;343308;343309;343310;343311;343312;343313;343314;343315;343316;343317;343318;343319;343320;343321;343322;343323;343324;343325;343326;343327;343328;343329;343330;343331	462909;462910;462911;462912;462913;462914;462915;462916;462917;462918;462919;462920;462921;462922;462923;462924;462925;462926;462927;462928;462929;462930;462931;462932;462933;462934;462935;462936;462937;462938;462939;462940;462941;462942;462943;462944;462945;462946;462947;462948;462949;462950;462951;462952;462953;462954;462955;462956;462957;462958;462959;462960;462961;462962;462963;462964;462965;462966;462967;462968;462969;462970;462971;462972;462973;462974;462975;462976;462977;462978;462979;462980;462981;462982;462983;462984;462985;462986;462987;462988;462989;462990;462991;462992;462993;462994;462995;462996;462997;462998;462999;463000;463001;463002;463003;463004;463005;463006;463007;463008;463009;463010;463011;463012;463013;463014;463015	462989			106	
VSIAVIK	1	Unmodified	728.47963	0.47962569	2191	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.38	6.44	3	2					1	2			4	3	1	46.975	42.647	2	0.032748	36552	160511_QHF_FH_JSI11i_2	50.966	18.495			0.88567	1.0046	19.181	8	1	Median	NaN	NaN	NaN	0	0	Median	0.79252	0.95863	11.084	4	1	Median	1.1145	1.0984	22.676	3	0	Median	1.3408	1.3253	NaN	1	0	Median	478620000	265280000	213340000	0	0	0	210250000	120910000	89337000	253140000	137550000	115590000	15227000	6816500	8410200	56565	2191	53273	343332;343333;343334;343335;343336;343337;343338;343339	463016;463017;463018	463016			3	
VSIAVLR	0	Unmodified	756.48577	0.48577371	1453	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	3	2	2	2	51.558	45.846	2	0.0079244	25231	160513_QHF_FH_JSI10Kac_6	88.35	41.548			1.084	1.0305	10.945	9	0	Median	1.3205	1.1727	7.8231	3	0	Plateau	0.97228	1.1234	18.089	2	0	Median	1.048	0.99542	6.3971	2	0	Median	0.9192	0.96409	5.1954	2	0	Median	994300000	470500000	523800000	269030000	108990000	160040000	239070000	125980000	113090000	254830000	125360000	129470000	231380000	110180000	121200000	56566	1453	53274	343340;343341;343342;343343;343344;343345;343346;343347;343348	463019;463020;463021;463022;463023;463024	463024			6	
VSIDGVEWSDIK	1	Unmodified	1346.6718	0.67179615	3163	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			72.637	72.425	2	0.040349	65632	160511_QHF_FH_JSI10i_1	45.829	7.0753			0.62031	0.73702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62031	0.73702	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36604000	24502000	12102000	0	0	0	36604000	24502000	12102000	0	0	0	0	0	0	56567	3163	53275	343349	463025	463025			1	
VSIFFDYAR	0	Unmodified	1116.5604	0.56039521	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		74.734	74.019	2	0.013585	66058	160511_QHF_FH_JSI11i_3	46.334	36.305			1.007	1.0249	30.662	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1186	1.273	NaN	1	0	Median	0.90647	0.82512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46091000	23100000	22990000	0	0	0	13744000	6413000	7331200	32346000	16687000	15659000	0	0	0	56568	5321	53276	343350;343351	463026;463027	463027			2	
VSIHLPVSR	0	Unmodified	1006.5924	0.59236404	3430	Q8IWV8	UBR2	E3 ubiquitin-protein ligase UBR2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			46.515	44.929	3	0.0064971	36735	160511_QHF_FH_JSI9i_3	40.715	27.362			0.84852	0.83203	12.878	2	1	Median	1.1163	0.91136	NaN	1	0	Median	0.64499	0.75961	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44398000	22433000	21965000	27216000	12147000	15069000	17181000	10286000	6895300	0	0	0	0	0	0	56569	3430	53277	343352;343353;343354	463028;463029;463030;463031	463031			4	
VSIHQMEMER	0	Unmodified	1258.5798	0.5798268	4386	Q9BRT9	GINS4	DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		30.868	30.868	3	0.048915	26778	160511_QHF_FH_JSI11i_3	18.34	15.302			1.2281	1.1523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2281	1.1523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	142100000	62426000	79675000	0	0	0	0	0	0	142100000	62426000	79675000	0	0	0	56570	4386	53278	343355	463032	463032			1	
VSILAAIDEASK	1	Unmodified	1215.6711	0.67106787	58	CON__P15497			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.89	3.96		4	4					1		2	2	3	2	79.31	78.532	2	9.795E-08	67985	160511_QHF_FH_JSI12i_3	137.17	92.858		+	0.7042	0.65554	42.467	8	0	Median	0.52039	0.43997	45.416	2	0	Median	0.45479	0.54695	0.53699	2	0	Median	0.89113	0.8791	30.524	2	0	Median	0.93299	0.99366	26.369	2	0	Median	1009000000	501130000	507910000	91564000	57133000	34431000	135250000	94332000	40918000	329610000	153680000	175940000	452610000	195990000	256620000	56571	58	53279	343356;343357;343358;343359;343360;343361;343362;343363;343364	463033;463034;463035;463036;463037;463038;463039;463040;463041;463042;463043;463044;463045;463046;463047;463048;463049;463050;463051	463049			19	
VSILESLDK	1	Unmodified	1002.5597	0.55972651	977	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.44	4.14	2	4	2					1		2	2	3	2	63.56	61.671	2	3.5787E-05	54097	160511_QHF_FH_JSI9i_2	99.802	63.922			1.0166	0.94677	19.912	9	2	Median	1.1665	0.97239	3.7751	2	0	Median	0.75317	0.91007	0.5941	2	0	Median	0.737	0.73627	35.266	3	1	Plateau	1.0857	1.1639	4.5485	2	1	Median	1001100000	520060000	481070000	204030000	99594000	104440000	248270000	139700000	108570000	304430000	161180000	143250000	244400000	119600000	124810000	56572	977	53280	343365;343366;343367;343368;343369;343370;343371;343372;343373	463052;463053;463054;463055;463056;463057;463058;463059;463060;463061;463062	463056			11	
VSIPEYYEGK	1	Acetyl (Protein N-term)	1225.5867	0.58666954	3790	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	yes	yes	0	1	0	0				By MS/MS	11	0				1									1	76.958	68.452	2	0.049678	26913	160513_QHF_FH_JSI12Kacf_1	40.002	28.154			0.67991	0.7183	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67991	0.7183	NaN	1	1	Median	2325800	1055600	1270100	0	0	0	0	0	0	0	0	0	2325800	1055600	1270100	56573	3790	53281	343374	463063	463063			1	
VSITEAMHR	0	Unmodified	1042.523	0.52296385	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	2	2	1	1	31.172	28.808	3	3.469E-06	24042	160511_QHF_FH_JSI10i_3	103.8	92.21			1.3003	1.2288	35.144	5	2	Median	1.7055	1.4448	51.212	2	1	Median	1.3934	1.5607	NaN	1	1	Median	1.3003	1.2288	NaN	1	0	Median	0.87544	0.85644	NaN	1	0	Median	600990000	279000000	321980000	135290000	69555000	65738000	137100000	57173000	79923000	201150000	89877000	111270000	127450000	62399000	65052000	56574	2636	53282	343375;343376;343377;343378;343379;343380	463064;463065;463066;463067;463068;463069;463070	463066			7	
VSIVTPEDILR	0	Unmodified	1240.7027	0.70270235	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.21	4	4	3				1	5		4	5	4	4	81.026	76.859	2	7.6618E-18	70154	160511_QHF_FH_JSI9i_2	155.42	136.15			0.9995	1.0212	10.53	17	3	Median	1.181	1.0223	5.768	4	0	Linear	0.81505	0.99417	10.264	5	1	Median	1.0816	1.0721	8.0186	4	2	Median	0.97526	1.0493	15.635	4	0	Median	2058600000	1074900000	983720000	360340000	168450000	191880000	609940000	342830000	267110000	635400000	340460000	294950000	452940000	223150000	229790000	56575	1824	53283	343381;343382;343383;343384;343385;343386;343387;343388;343389;343390;343391;343392;343393;343394;343395;343396;343397	463071;463072;463073;463074;463075;463076;463077;463078;463079;463080;463081;463082;463083;463084;463085;463086;463087;463088;463089;463090;463091;463092;463093;463094;463095;463096;463097;463098;463099	463089			29	
VSKEEEEK	2	Unmodified	976.47131	0.47130543	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	4.5782	4.2573	2;3	0.0087722	1996	160511_QHF_FH_JSI12i_2	91.584	50.555			1.5175	1.7691	68.663	7	1	Median	0.80822	0.69515	NaN	1	0	Median	1.5498	1.8765	8.3379	2	0	Median	3.4827	3.4574	81.311	2	1	Median	1.1363	1.2242	34.442	2	0	Median	2151400000	904190000	1247200000	468750000	272850000	195900000	643930000	222830000	421100000	559210000	151690000	407530000	479500000	256820000	222680000	56576	1242	53284	343398;343399;343400;343401;343402;343403;343404	463100;463101;463102;463103	463100			4	
VSKPTDSK	2	Unmodified	860.46035	0.46034682	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	5.0373	4.9023	2;3	0.012574	2585	160511_QHF_FH_JSI12i_3	84.615	46.641			0.9328	0.89284	6.4386	6	1	Median	1.0217	0.86534	NaN	1	0	Median	0.75368	0.92121	NaN	1	0	Median	0.9328	0.89263	4.9057	2	0	Median	0.90242	0.92973	11.902	2	1	Median	1037800000	549410000	488410000	71270000	32368000	38902000	51502000	26614000	24888000	167280000	85210000	82074000	747760000	405220000	342550000	56577	3119	53285	343405;343406;343407;343408;343409;343410	463104;463105;463106;463107	463106			4	
VSLANLKPNPGSK	2	Unmodified	1323.751	0.75104953	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	2	1	1	40.167	39.128	2;3	0.00047391	34352	160511_QHF_FH_JSI11i_3	55.213	41.249			1.0803	1.0313	28.284	6	1	Median	1.2947	1.0359	1.4176	2	0	Median	1.0803	1.2041	21.14	2	1	Median	0.7152	0.67599	NaN	1	0	Median	0.65584	0.67975	NaN	1	0	Median	1556500000	792500000	763960000	695440000	318450000	377000000	483390000	264140000	219250000	263400000	140500000	122900000	114230000	69415000	44815000	56578	5173	53286	343411;343412;343413;343414;343415;343416	463108;463109;463110;463111;463112;463113;463114	463108			7	
VSLDPHAQVAVGILR	0	Unmodified	1573.894	0.89402537	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.487	68.189	2	0.0081452	59010	160511_QHF_FH_JSI12i_3	48.741	33.169			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56579	1435	53287	343417	463115	463115			1	
VSLDVNHFAPDELTVK	1	Unmodified	1782.9152	0.91521432	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.11	9	8	8					3		7	7	7	7	76.037	74.198	2;3	3.6869E-52	66236	160511_QHF_FH_JSI9i_2	212.17	197.75			0.99435	1.0125	24.885	26	2	Median	0.9762	0.82427	13.883	7	0	Median	0.85014	1.003	35.749	7	2	Median	1.0918	1.0658	5.5911	6	0	Median	1.1279	1.2278	13.028	6	0	Median	16419000000	8171400000	8247100000	3278100000	1574900000	1703200000	3909500000	2117900000	1791600000	5259100000	2566500000	2692600000	3971700000	1912000000	2059800000	56580	814	53288	343418;343419;343420;343421;343422;343423;343424;343425;343426;343427;343428;343429;343430;343431;343432;343433;343434;343435;343436;343437;343438;343439;343440;343441;343442;343443;343444;343445	463116;463117;463118;463119;463120;463121;463122;463123;463124;463125;463126;463127;463128;463129;463130;463131;463132;463133;463134;463135;463136;463137;463138;463139;463140;463141;463142;463143;463144;463145;463146;463147;463148;463149;463150;463151;463152;463153;463154;463155;463156;463157;463158;463159;463160;463161;463162;463163;463164;463165;463166;463167;463168;463169;463170;463171;463172;463173;463174;463175;463176;463177;463178;463179;463180;463181;463182;463183;463184;463185;463186;463187;463188;463189	463159			74	
VSLEDLYNGK	1	Unmodified	1136.5714	0.57135383	456	O60884	DNAJA2	DnaJ homolog subfamily A member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	62.545	61.847	2	0.00023715	56230	160511_QHF_FH_JSI12i_1	80.755	63.129			0.91423	0.84528	22.972	3	1	Plateau	0.87181	0.70763	NaN	1	0	Median	0.91423	1.0876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95586	1.0097	NaN	1	0	Median	701420000	322550000	378870000	269870000	117910000	151960000	219200000	129810000	89385000	0	0	0	212350000	74826000	137520000	56581	456	53289	343446;343447;343448	463190;463191;463192;463193	463190			4	
VSLEEIYSGCTK	1	Unmodified	1384.6544	0.65443153	1262;5269	P25685;Q9UDY4	DNAJB1;DNAJB4	DnaJ homolog subfamily B member 1;DnaJ homolog subfamily B member 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	60.745	59.91	2	1.4993E-05	52054	160511_QHF_FH_JSI11i_2	128.01	108.02			1.1728	1.192	24.634	5	4	Median	1.5276	1.3812	NaN	1	1	Median	0.91944	1.1441	NaN	1	1	Median	1.0361	1.0385	19.496	2	2	Median	1.57	1.7631	NaN	1	0	Median	495590000	250210000	245390000	47286000	17902000	29383000	67708000	41955000	25753000	286190000	158170000	128020000	94410000	32181000	62229000	56582	1262;5269	53290	343449;343450;343451;343452;343453	463194;463195;463196;463197;463198;463199	463198			6	
VSLEETAQLPSAPQGSR	0	Unmodified	1768.8955	0.89554151	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	55.499	54.84	2;3	1.5961E-40	49826	160511_QHF_FH_JSI12i_1	206.18	180.71			0.84114	0.91516	19.418	5	1	Linear	1.1265	0.94145	NaN	1	0	Median	0.78969	0.91516	NaN	1	0	Median	0.8511	0.826	NaN	1	0	Median	1.0614	1.1142	28.715	2	1	Median	466550000	236020000	230540000	79133000	39567000	39567000	101200000	51557000	49647000	98641000	50906000	47736000	187580000	93987000	93588000	56583	4378	53291	343454;343455;343456;343457;343458	463200;463201;463202;463203;463204;463205;463206;463207;463208	463203			9	
VSLERLDLDLTADSQPPVFK	1	Unmodified	2242.1845	0.18451289	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	93.061	92.897	3	2.1372E-08	80335	160511_QHF_FH_JSI12i_3	104.06	95.113			0.7809	0.84333	17.388	4	2	Linear	1.0217	0.86431	NaN	1	1	Median	0.92334	1.144	NaN	1	1	Median	0.81616	0.77086	NaN	1	0	Median	0.79851	0.82286	NaN	1	0	Median	323350000	159620000	163730000	9893200	4470400	5422800	22247000	11759000	10488000	84545000	44720000	39825000	206660000	98673000	107990000	56584	2380	53292	343459;343460;343461;343462	463209;463210;463211;463212;463213;463214;463215;463216	463215			8	
VSLFGALVHSR	0	Unmodified	1184.6666	0.66659162	4227	Q96RT7	TUBGCP6	Gamma-tubulin complex component 6	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		74.152	64.797	3	0.026743	35204	160513_QHF_FH_JSI11Kac_6	34.685	24.581			1.961	1.9187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.961	1.9187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6561400	2540800	4020500	0	0	0	0	0	0	6561400	2540800	4020500	0	0	0	56585	4227	53293	343463	463217	463217			1	
VSLGGASR	0	Unmodified	745.40825	0.40825167	2661	Q15386	UBE3C	Ubiquitin-protein ligase E3C	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	5.336	4.9943	2	0.05083	3005	160511_QHF_FH_JSI12i_1	37.094	3.2408			0.82157	0.87761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82157	0.87761	NaN	1	0	Median	1418100000	693000000	725070000	0	0	0	0	0	0	0	0	0	1418100000	693000000	725070000	56586	2661	53294	343464	463218	463218			1	
VSLLGPVTTPEHQLLK	1	Unmodified	1730.9931	0.99307071	4634	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	72.691	72.028	3	3.7272E-06	62482	160511_QHF_FH_JSI12i_3	117.4	106.12			1.1964	1.2786	32.092	6	1	Median	1.6055	1.385	NaN	1	0	Median	1.5651	1.8665	44.293	2	1	Median	1.109	1.0899	7.0893	2	0	Median	1.1594	1.1981	NaN	1	0	Median	324040000	157840000	166200000	34187000	13188000	20999000	64754000	27896000	36858000	126110000	66231000	59881000	98986000	50523000	48463000	56587	4634	53295	343465;343466;343467;343468;343469;343470	463219;463220;463221;463222;463223;463224;463225;463226	463226			8	
VSLMPATLAR	0	Unmodified	1057.5954	0.59540051	299	O15533	TAPBP	Tapasin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		58.463	58.463	2	0.010077	52050	160511_QHF_FH_JSI11i_3	48.157	24.364			0.84919	0.78232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84919	0.78232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	730480000	377550000	352930000	0	0	0	0	0	0	730480000	377550000	352930000	0	0	0	56588	299	53296	343471	463227;463228	463227			2	
VSLQKSTAVMLPK	2	Acetyl (K)	1442.8167	0.81668625	3166	Q6WRI0	IGSF10	Immunoglobulin superfamily member 10	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.833	87.426	2	0.0011482	49211	160513_QHF_FH_JSI9Kac_6	85.377	46.81			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1377800000	1377800000	0	247190000	247190000	0	420610000	420610000	0	351270000	351270000	0	358680000	358680000	0	56589	3166	53297	343472;343473;343474;343475	463229;463230;463231;463232	463230	2786		4	
VSLQVHPDR	0	Unmodified	1049.5618	0.56179219	3814	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	22.176	22.172	3	0.0025863	18642	160511_QHF_FH_JSI11i_3	49.35	31.531			0.91778	0.89046	2.0816	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94581	0.87745	NaN	1	0	Median	0.89057	0.90367	NaN	1	1	Median	253920000	133490000	120430000	0	0	0	0	0	0	115510000	59510000	56000000	138410000	73977000	64433000	56590	3814	53298	343476;343477	463233;463234	463233			2	
VSLSHACK	1	Unmodified	900.44874	0.44873627	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	8.8346	8.5405	2;3	0.015522	6250	160511_QHF_FH_JSI11i_3	30.254	2.4827			1.0651	1.0839	24.092	2	0	Median	NaN	NaN	NaN	0	0	Median	1.156	1.2852	NaN	1	0	Median	0.98136	0.9141	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	263830000	128190000	135640000	0	0	0	39806000	19936000	19870000	224020000	108250000	115770000	0	0	0	56591	5108	53299	343478;343479;343480	463235;463236;463237	463235			3	
VSMAPDGNGGLYR	0	Unmodified	1335.6241	0.62413446	2728	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	40.749	39.54	2	0.013076	33740	160511_QHF_FH_JSI12i_2	51.092	45.596			1.3944	1.3596	6.3276	2	0	Median	1.6819	1.4218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.156	1.3001	NaN	1	0	Median	102700000	49108000	53588000	52691000	22847000	29844000	0	0	0	0	0	0	50006000	26262000	23744000	56592	2728	53300	343481;343482	463238	463238			1	
VSMFVLGTGDEPPPERR	0	Unmodified	1885.9356	0.93563219	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			62.58	61.067	3	9.9561E-07	51160	160511_QHF_FH_JSI10i_3	112.34	95.809			1.1989	1.1408	10.43	2	0	Median	1.5217	1.2282	NaN	1	0	Median	0.94458	1.0597	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	186750000	84645000	102110000	84188000	34089000	50100000	102560000	50556000	52007000	0	0	0	0	0	0	56593	5161	53301	343483;343484	463239;463240;463241;463242;463243	463239			5	
VSMHYSDPKPK	2	Unmodified	1287.6282	0.6281572	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	15.693	15.744	3	0.028372	12416	160511_QHF_FH_JSI12i_3	36.32	23.69			0.28563	0.29268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28563	0.29268	NaN	1	1	Median	66295000	44566000	21728000	0	0	0	0	0	0	0	0	0	66295000	44566000	21728000	56594	2140	53302	343485	463244	463244			1	
VSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGK	2	Oxidation (M)	3895.9415	0.94145243	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	1	1		By MS/MS	By MS/MS		3	0			2								1	1		84.326	83.722	4	0.00014254	74664	160511_QHF_FH_JSI11i_3	38.653	34.501			0.95736	1.0125	0.00098834	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86703	1.0125	NaN	1	0	Median	1.0571	1.0125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58042000	28777000	29266000	0	0	0	27626000	14438000	13188000	30416000	14339000	16077000	0	0	0	56595	989	53303	343486;343487	463245;463246	463245		568	2	
VSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGK	2	Unmodified	3879.9465	0.94653781	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		91.491	90.678	4	5.0278E-27	80338	160511_QHF_FH_JSI11i_3	102.55	98.11			1.1436	0.98683	5.1927	4	1	Median	1.2008	0.98683	1.6678	2	1	Median	0.80856	0.93263	NaN	1	0	Median	1.1239	1.0565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	270650000	136690000	133960000	40728000	21016000	19711000	68405000	34854000	33551000	161520000	80820000	80698000	0	0	0	56596	989	53303	343488;343489;343490;343491	463247;463248;463249;463250;463251;463252;463253;463254;463255;463256;463257;463258	463249			12	
VSMPDVDLNLK	1	Unmodified	1229.6326	0.63257388	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	72.125	71.608	2	0.00026485	65212	160511_QHF_FH_JSI12i_1	78.098	62.947			0.79739	1.093	12.321	4	3	Linear	1.4669	1.1944	NaN	1	1	Median	0.97394	1.1474	NaN	1	1	Median	1.073	1.0412	NaN	1	1	Median	0.87501	0.90543	NaN	1	0	Median	297060000	146330000	150740000	42938000	19508000	23430000	83225000	39399000	43825000	75546000	38962000	36584000	95356000	48457000	46899000	56597	2286	53304	343492;343493;343494;343495;343496	463259;463260;463261;463262;463263;463264	463261			6	
VSMPDVELNLK	1	Unmodified	1243.6482	0.64822394	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	73.163	72.524	2	9.43E-05	65562	160511_QHF_FH_JSI10i_1	87.806	72.869			0.92768	0.94134	19.107	6	4	Median	0.9342	0.78667	NaN	1	0	Median	0.63363	0.73518	NaN	1	0	Median	0.97665	0.94134	6.8306	2	2	Median	1.0382	1.1306	13.436	2	2	Median	374970000	213740000	161240000	40313000	20542000	19771000	103460000	73902000	29560000	114890000	57017000	57872000	116310000	62274000	54032000	56598	2286	53305	343497;343498;343499;343500;343501;343502;343503;343504	463265;463266;463267;463268;463269;463270;463271;463272	463268			7	
VSMSPVLHTQNK	1	Unmodified	1339.6918	0.69182009	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	29.064	28.462	2;3	3.0237E-08	23758	160511_QHF_FH_JSI12i_3	140.07	107.18			1.2418	1.3975	51.483	7	2	Median	1.8325	1.517	11.607	2	1	Median	1.2418	1.4545	NaN	1	0	Median	1.6391	1.5401	88.919	2	1	Median	0.71178	0.73038	16.019	2	0	Median	1330300000	638880000	691460000	88769000	29886000	58883000	187870000	78509000	109360000	412540000	209010000	203520000	641170000	321470000	319700000	56599	3734	53306	343505;343506;343507;343508;343509;343510;343511	463273;463274;463275;463276;463277;463278;463279;463280;463281;463282;463283	463281			11	
VSMSPVLHTQNK	1	Oxidation (M)	1355.6867	0.68673471	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	13.536	13.61	3	0.011041	10598	160511_QHF_FH_JSI12i_3	38.238	29.725			1.4614	1.5121	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4614	1.5121	NaN	1	0	Median	40877000	19825000	21052000	0	0	0	0	0	0	0	0	0	40877000	19825000	21052000	56600	3734	53306	343512	463284	463284		2287	1	
VSMSSSEIEGNVTFHEK	1	Unmodified	1879.8622	0.86219247	3405	Q8IVF2	AHNAK2	Protein AHNAK2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	49.999	49.764	3	0.00014542	42626	160511_QHF_FH_JSI12i_3	60.307	44.68			1.081	1.0829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.081	1.0829	NaN	1	0	Median	29662000	15423000	14239000	0	0	0	0	0	0	0	0	0	29662000	15423000	14239000	56601	3405	53307	343513	463285;463286	463286			2	
VSMVGQVK	1	Unmodified	846.46332	0.4633237	5650	Q9Y570	PPME1	Protein phosphatase methylesterase 1	yes	yes	0	0	0	0		By matching	By MS/MS		2	0		2									1	1		22.969	22.367	2	0.021969	18457	160511_QHF_FH_JSI11i_2	44.395	24.548			1.0361	1.1408	35.208	2	0	Median	NaN	NaN	NaN	0	0	Median	0.73741	0.88942	NaN	1	0	Median	1.4558	1.4634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	319550000	180690000	138860000	0	0	0	120120000	68978000	51140000	199430000	111710000	87723000	0	0	0	56602	5650	53308	343514;343515	463287	463287			1	
VSNLEELPLNEYREYIK	1	Unmodified	2108.079	0.078985188	4380	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2	0		2									1	1		83.644	83.023	3	0.01992	73053	160511_QHF_FH_JSI11i_2	36.638	23.408			0.82703	0.92657	9.9924	2	0	Median	NaN	NaN	NaN	0	0	Median	0.80623	0.9944	NaN	1	0	Median	0.84836	0.86336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	74449000	44179000	30269000	0	0	0	46831000	28519000	18311000	27618000	15660000	11958000	0	0	0	56603	4380	53309	343516;343517	463288;463289	463288			2	
VSNLQYLHSYLTYIK	1	Unmodified	1840.9723	0.97233527	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.57		1	7						8	5	3	4	4	81.603	77.162	2;3	5.9045E-103	39794	160513_QHF_FH_JSI11Kac_6	248.68	223.34			0.97769	0.96913	11.515	16	1	Median	1.2152	0.99776	14.777	5	1	Median	0.81013	0.96305	4.4886	3	0	Median	0.97769	0.9323	9.4221	4	0	Median	0.91505	0.93931	8.922	4	0	Median	7604800000	3883300000	3721500000	2288700000	1016600000	1272100000	2261700000	1212400000	1049300000	1459000000	798600000	660420000	1595400000	855690000	739680000	56604	5295	53310	343518;343519;343520;343521;343522;343523;343524;343525;343526;343527;343528;343529;343530;343531;343532;343533	463290;463291;463292;463293;463294;463295;463296;463297;463298;463299;463300;463301;463302;463303;463304;463305;463306;463307;463308;463309;463310;463311;463312;463313;463314;463315;463316;463317;463318;463319;463320;463321	463299			31	
VSNSGITR	0	Unmodified	832.44028	0.44028008	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.42	1	4					2	3		1	3	4	2	8.393	3.6359	2	0.022642	5137	160511_QHF_FH_JSI9i_2	43.769	28.137			0.96145	0.91362	8.7773	10	0	Linear	1.1786	1.0052	NaN	1	0	Median	0.73154	0.88756	12.136	3	0	Plateau	0.99155	1.0036	6.8889	4	0	Median	0.89009	0.97306	15.597	2	0	Median	5296900000	2762000000	2534900000	918400000	380120000	538290000	770420000	461180000	309240000	2406600000	1231200000	1175400000	1201500000	689530000	512000000	56605	1722	53311	343534;343535;343536;343537;343538;343539;343540;343541;343542;343543	463322;463323;463324;463325	463324			4	
VSNTQDASVSIVDYYEPR	0	Unmodified	2041.9593	0.95926398	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.074	65.473	2	5.5015E-24	59589	160511_QHF_FH_JSI11i_1	183.01	170.25			0.97427	0.97487	12.565	4	0	Median	1.4066	1.1462	NaN	1	0	Median	0.7406	0.85698	NaN	1	0	Median	1.059	1.0239	NaN	1	0	Median	0.89631	0.92817	NaN	1	0	Median	155770000	77402000	78366000	35458000	17492000	17966000	38564000	21740000	16824000	33638000	17071000	16567000	48108000	21099000	27009000	56606	3173	53312	343544;343545;343546;343547	463326;463327;463328;463329;463330;463331;463332	463327			7	
VSPATPK	1	Unmodified	698.39629	0.39629	4824	Q9HAH7	FBRS	Probable fibrosin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	1	2	1	8.9612	8.5672	2	0.045601	5976	160511_QHF_FH_JSI9i_1	44.611	0			0.81953	0.85336	12.302	6	0	Median	1.0543	0.89953	5.9656	2	0	Median	0.74989	0.91134	NaN	1	0	Median	0.81953	0.81325	5.3251	2	0	Median	0.63952	0.6686	NaN	1	0	Median	13616000000	7226700000	6388900000	4019700000	1751300000	2268400000	254480000	146230000	108260000	4673200000	2547700000	2125500000	4668200000	2781500000	1886700000	56607	4824	53313	343548;343549;343550;343551;343552;343553	463333	463333			1	
VSPDMAIFITMNPGYAGR	0	Unmodified	1938.9332	0.93318935	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.9		10							3	2	3	4	4	97.099	95.088	2;3	9.0887E-33	45142	160513_QHF_FH_JSI11Kac_6	167.89	145.36			1.1246	1.0797	14.95	13	4	Median	1.1856	1.0221	7.7473	2	0	Median	0.85932	1.021	23.321	3	0	Median	1.153	1.1459	9.7642	4	2	Median	1.1378	1.2432	9.7286	4	2	Median	610570000	303440000	307130000	47539000	22905000	24633000	175270000	102230000	73042000	263410000	121040000	142370000	124350000	57260000	67085000	56608	2517	53314	343554;343555;343556;343557;343558;343559;343560;343561;343562;343563;343564;343565;343566	463334;463335;463336;463337;463338;463339;463340;463341;463342;463343;463344;463345;463346;463347;463348;463349;463350	463337			17	
VSPEEAIK	1	Unmodified	871.4651	0.46509784	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	27.317	24.088	2	0.005887	20689	160511_QHF_FH_JSI9i_1	64.265	34.079			0.87727	0.84566	9.0894	6	0	Linear	1.0899	0.88363	NaN	1	0	Median	0.73934	0.87549	NaN	1	0	Median	0.92315	0.90974	17.691	2	0	Median	0.87727	0.92649	8.4775	2	0	Median	2073100000	1087200000	985970000	418660000	175750000	242920000	486600000	279470000	207130000	642380000	344070000	298320000	525470000	287870000	237610000	56609	832	53315	343567;343568;343569;343570;343571;343572	463351;463352;463353;463354;463355;463356;463357;463358	463356			8	
VSPEEVTIYNHPGIQAELR	0	Unmodified	2151.096	0.096032235	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.339	64.415	3	3.7328E-06	55407	160511_QHF_FH_JSI12i_2	87.356	78.259			1.3389	1.4193	12.405	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5268	1.5494	NaN	1	0	Median	1.1741	1.3001	NaN	1	0	Median	490250000	235060000	255190000	0	0	0	0	0	0	313340000	131410000	181930000	176910000	103650000	73259000	56610	3734	53316	343573;343574	463359;463360;463361	463360			2	
VSPETVDSVIMGNVLQSSSDAIYLAR	0	Unmodified	2750.3797	0.37966024	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			101.88	101.86	3	1.6437E-13	92616	160511_QHF_FH_JSI10i_1	99.838	92.035			0.99169	1.1637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.99169	1.1637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141300000	58817000	82481000	0	0	0	141300000	58817000	82481000	0	0	0	0	0	0	56611	1545	53317	343575	463362	463362			1	
VSPIQIDGAGR	0	Unmodified	1111.5986	0.59857163	3660	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		40.49	40.167	2	0.0079367	36250	160511_QHF_FH_JSI11i_1	50.353	25.431			1.3198	1.2869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3198	1.2869	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	126430000	52805000	73625000	0	0	0	0	0	0	126430000	52805000	73625000	0	0	0	56612	3660	53318	343576	463363;463364	463364			2	
VSPLNLSSVTP	0	Unmodified	1112.6077	0.60773933	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			77.85	77.328	2	0.00086028	70186	160511_QHF_FH_JSI10i_1	67.897	59.854			1.0066	0.96996	8.1764	2	0	Median	1.2532	1.0277	NaN	1	0	Median	0.80849	0.91547	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44982000	24747000	20235000	24165000	11408000	12757000	20817000	13339000	7477700	0	0	0	0	0	0	56613	5350	53319	343577;343578	463365;463366;463367	463365			3	
VSPMLYK	1	Unmodified	836.44661	0.44661101	2456	Q13619	CUL4A	Cullin-4A	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	34.596	33.893	2	0.023698	28750	160511_QHF_FH_JSI12i_2	55.441	41.028			0.88201	0.97982	11.937	4	0	Median	NaN	NaN	NaN	0	0	Median	0.85083	1.0523	NaN	1	0	Median	0.88479	0.89103	NaN	1	0	Median	0.9435	1.0224	16.11	2	0	Median	934840000	495100000	439740000	0	0	0	283250000	155420000	127830000	340790000	184330000	156470000	310800000	155360000	155450000	56614	2456	53320	343579;343580;343581;343582	463368;463369;463370	463368			3	
VSPNELILGWYATGHDITEHSVLIHEYYSR	0	Unmodified	3498.7208	0.72081862	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.606	85.886	5	1.5339E-10	49047	160513_QHF_FH_JSI10Kac_6	95.435	85.197			0.81147	0.96954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81147	0.96954	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	641280000	460970000	180320000	0	0	0	641280000	460970000	180320000	0	0	0	0	0	0	56615	120	53321	343583	463371	463371			1	
VSPSFSAELK	1	Unmodified	1063.555	0.55497548	2402	Q13416	ORC2	Origin recognition complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	102.88	102.8	2	0.019055	93639	160511_QHF_FH_JSI11i_1	42.109	8.3124			1.3015	1.4676	52.252	5	0	Median	1.1787	0.99188	NaN	1	0	Median	0.73515	0.85492	82.146	2	0	Median	1.7433	1.7197	NaN	1	0	Median	1.4315	1.4676	NaN	1	0	Median	146950000	65431000	81517000	32866000	15339000	17527000	52342000	26286000	26056000	27829000	8779400	19049000	33911000	15026000	18885000	56616	2402	53322	343584;343585;343586;343587;343588	463372	463372			1	
VSPSPSQESLSSSK	1	Unmodified	1418.6889	0.68890278	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	22.288	21.675	2	0.0019743	18975	160511_QHF_FH_JSI12i_1	73.466	36.275			1.1422	0.93293	13.543	3	3	Plateau	1.1491	0.93293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0132	0.97206	NaN	1	1	Median	1.1422	1.2008	NaN	1	1	Median	99616000	44325000	55291000	38644000	16511000	22133000	0	0	0	31208000	14331000	16877000	29764000	13483000	16281000	56617	2902	53323	343589;343590;343591	463373;463374;463375	463374			3	
VSPSTSYTPSR	0	Unmodified	1180.5724	0.57241646	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	20.739	20.083	2	0.0013463	16486	160511_QHF_FH_JSI11i_2	64.297	53.146			1.122	1.0712	9.6332	8	0	Median	1.3789	1.1544	15.134	2	0	Median	0.87443	1.0438	7.48	2	0	Median	1.1222	1.1103	8.8745	2	0	Median	1.0475	1.1403	12.847	2	0	Median	434390000	204570000	229820000	91531000	37199000	54331000	104120000	55025000	49099000	129810000	62710000	67101000	108920000	49634000	59287000	56618	4416	53324	343592;343593;343594;343595;343596;343597;343598;343599	463376;463377;463378;463379;463380;463381;463382	463381			7	
VSPVSYLR	0	Unmodified	919.51272	0.51271674	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	44.918	44.487	2	0.0033353	39207	160511_QHF_FH_JSI11i_3	73.324	50.832			1.0887	1.0859	24.017	3	1	Plateau	1.9834	1.6842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2768	1.2043	NaN	1	0	Median	1.0353	1.0574	NaN	1	0	Median	612540000	259420000	353120000	166120000	52498000	113620000	0	0	0	194970000	94556000	100420000	251440000	112360000	139080000	56619	3734	53325	343600;343601;343602;343603;343604	463383;463384;463385;463386;463387	463383			5	
VSQAAADLK	1	Unmodified	901.4869	0.48689592	2058	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	14.205	13.939	2	0.0024003	11325	160511_QHF_FH_JSI11i_1	74.267	11.721			0.20201	0.2154	21.837	3	3	Median	NaN	NaN	NaN	0	0	Median	0.24378	0.28814	NaN	1	1	Median	0.19088	0.1879	NaN	1	1	Median	0.20201	0.2154	NaN	1	1	Median	4453300000	3792700000	660630000	0	0	0	1669300000	1397700000	271540000	1455300000	1253400000	201850000	1328700000	1141500000	187250000	56620	2058	53326	343605;343606;343607	463388;463389;463390	463388			3	
VSQEHPVVLTK	1	Unmodified	1235.6874	0.68738664	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.52	6.19	2	8	7					4	4	6	6	7	6	24.081	20.778	2;3	1.5133E-05	16813	160511_QHF_FH_JSI12i_3	111.86	96.917			0.97484	0.97808	18.074	25	1	Median	1.1354	0.96278	24.126	6	1	Median	0.80635	0.96415	15.62	6	0	Median	1.0071	0.98913	12.254	7	0	Median	0.94121	1.0282	16.826	6	0	Median	7691400000	3852900000	3838400000	1306600000	636940000	669690000	1647800000	867170000	780670000	2375800000	1306100000	1069700000	2361100000	1042700000	1318400000	56621	1372	53327	343608;343609;343610;343611;343612;343613;343614;343615;343616;343617;343618;343619;343620;343621;343622;343623;343624;343625;343626;343627;343628;343629;343630;343631;343632	463391;463392;463393;463394;463395;463396;463397;463398;463399;463400;463401;463402;463403;463404;463405;463406;463407;463408;463409;463410;463411;463412;463413;463414;463415;463416;463417;463418;463419;463420;463421;463422;463423;463424;463425;463426;463427;463428;463429;463430;463431;463432;463433	463429			43	
VSQEHPVVLTKFVEGAR	1	Acetyl (K)	1937.0371	0.037060793	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		73.938	65.574	3	3.038E-05	35587	160513_QHF_FH_JSI11Kac_6	88.551	72.152			1.3899	1.5001	213.39	2	1	Median	NaN	NaN	NaN	0	0	Median	5.6931	6.783	NaN	1	1	Median	0.33931	0.33174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	107990000	64361000	43629000	0	0	0	17677000	398040	17279000	90313000	63963000	26350000	0	0	0	56622	1372	53328	343633;343634	463434;463435	463434	1316		2	
VSQGQLVVMQPEK	1	Unmodified	1441.7599	0.75989966	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.01	5	4				2	4			4	4	3	4	50.528	45.321	2;3	0.0001272	39664	160511_QHF_FH_JSI10i_2	86.313	76.081			0.96468	0.9826	12.85	13	0	Median	1.1856	0.98399	14.94	2	0	Median	0.75051	0.88479	3.1001	4	0	Median	1.0086	0.9826	10.268	3	0	Plateau	0.95005	1.0095	16.789	4	0	Median	741060000	382620000	358440000	165080000	80474000	84602000	215390000	131070000	84320000	184790000	81452000	103340000	175800000	89621000	86181000	56623	1034	53329	343635;343636;343637;343638;343639;343640;343641;343642;343643;343644;343645;343646;343647;343648;343649	463436;463437;463438;463439;463440;463441;463442;463443;463444;463445;463446;463447;463448;463449;463450;463451;463452;463453;463454;463455;463456;463457;463458;463459	463458			23	
VSQGQLVVMQPEK	1	Oxidation (M)	1457.7548	0.75481428	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3					2	2	3	38.46	33.71	2	0.0017693	29902	160511_QHF_FH_JSI11i_1	67.118	51.917			0.99079	1.0799	17.512	6	3	Median	NaN	NaN	NaN	0	0	Median	0.81479	0.96024	6.984	2	1	Median	1.176	1.1559	NaN	1	0	Median	1.154	1.269	23.642	3	2	Median	187060000	93096000	93960000	0	0	0	68485000	36182000	32303000	7901400	3564700	4336700	110670000	53349000	57320000	56624	1034	53329	343650;343651;343652;343653;343654;343655;343656	463460;463461;463462;463463;463464;463465	463460		648	6	
VSQGSKDPAEGDGAQPEETPR	1	Unmodified	2153.9825	0.98251862	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.419	15.946	3	2.5505E-08	13324	160511_QHF_FH_JSI11i_1	90.308	81.025			1.0045	0.93744	8.5685	4	0	Median	1.1329	0.93488	NaN	1	0	Median	0.79344	0.94	NaN	1	0	Median	0.95916	0.91925	NaN	1	0	Median	1.0519	1.1043	NaN	1	0	Median	622840000	347890000	274950000	140470000	76328000	64145000	173780000	105920000	67857000	151810000	83274000	68533000	156780000	82363000	74418000	56625	2569	53330	343657;343658;343659;343660	463466;463467;463468;463469;463470;463471;463472	463467			7	
VSQGVEDGPDTK	1	Unmodified	1230.5728	0.57281039	5233	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.75	5.76	4				2	2				1	2	3	2	14.608	10.289	2	2.3371E-28	9440	160511_QHF_FH_JSI12i_1	158.42	127			0.82169	0.89206	30.004	7	1	Median	1.0977	0.90523	NaN	1	0	Median	0.78709	0.93033	5.9405	2	0	Median	0.89326	0.86246	45.525	3	0	Median	0.6457	0.68076	NaN	1	1	Median	1552900000	734670000	818240000	471560000	170610000	300950000	548190000	263240000	284950000	528510000	298420000	230090000	4638800	2394800	2244000	56626	5233	53331	343661;343662;343663;343664;343665;343666;343667;343668	463473;463474;463475;463476;463477;463478;463479;463480;463481	463475			9	
VSQLLAVTGK	1	Unmodified	1014.6073	0.6073454	2482	Q13951	CBFB	Core-binding factor subunit beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.961	43.574	2	0.020803	37261	160511_QHF_FH_JSI12i_2	49.3	36.773			2.9427	3.2022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9427	3.2022	NaN	1	1	Median	25033000	6585700	18448000	0	0	0	0	0	0	0	0	0	25033000	6585700	18448000	56627	2482	53332	343669	463482	463482			1	
VSQLLAVTGKK	2	Unmodified	1142.7023	0.70230842	2482	Q13951	CBFB	Core-binding factor subunit beta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.017	32.924	3	0.0030122	27846	160511_QHF_FH_JSI12i_3	52.863	35.921			0.1051	0.10508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.1051	0.10508	NaN	1	1	Median	42433000	39085000	3348400	0	0	0	0	0	0	0	0	0	42433000	39085000	3348400	56628	2482	53333	343670	463483	463483			1	
VSQLMEWTNK	1	Unmodified	1234.6016	0.6016081	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							1	1	3	2	53.002	52.356	2	2.497E-05	46351	160511_QHF_FH_JSI11i_3	106.62	89.379			1.2375	1.1938	30.332	7	2	Median	1.2754	1.112	NaN	1	0	Median	1.6678	2.0509	NaN	1	1	Median	1.1357	0.85778	19.503	3	1	Plateau	1.2377	1.3172	8.227	2	0	Median	912470000	442120000	470350000	124200000	59132000	65071000	206030000	86973000	119060000	313250000	162290000	150960000	268990000	133720000	135270000	56629	4641	53334	343671;343672;343673;343674;343675;343676;343677	463484;463485;463486;463487;463488;463489;463490;463491;463492	463484			9	
VSQLQER	0	Unmodified	858.45593	0.45593014	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	8.8451	8.4892	2	0.013952	6313	160511_QHF_FH_JSI10i_1	66.993	24.124			0.84443	0.93271	11.885	7	0	Median	1.188	0.98744	NaN	1	0	Median	0.77776	0.93364	16.471	2	0	Median	1.0107	1.0177	12.327	2	0	Median	0.77782	0.83609	0.9612	2	0	Median	4450000000	2326800000	2123200000	426320000	198970000	227360000	1411000000	828860000	582090000	1551700000	740520000	811170000	1061000000	558440000	502610000	56630	1460	53335	343678;343679;343680;343681;343682;343683;343684	463493;463494;463495;463496	463495			4	
VSQMAQYFEPLTLAAVGAASK	1	Unmodified	2181.114	0.11399049	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							2	2	4	4	101.45	101.38	2;3	1.074E-36	89877	160511_QHF_FH_JSI10i_2	151.21	146.94			1.1243	1.0964	25.555	12	0	Median	1.1243	0.95856	6.2183	2	0	Median	0.70273	0.85805	10.138	2	0	Median	1.3314	1.2728	24.842	4	0	Median	1.2426	1.3542	23.732	4	0	Median	3152400000	1548900000	1603500000	366740000	151100000	215640000	583860000	341350000	242510000	1085000000	495410000	589610000	1116800000	561030000	555750000	56631	5616	53336	343685;343686;343687;343688;343689;343690;343691;343692;343693;343694;343695;343696	463497;463498;463499;463500;463501;463502;463503;463504;463505;463506	463504			10	
VSQMLILTPFQGQGHGAQLLETVHR	0	Oxidation (M)	2775.449	0.44901763	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS			9.5	6.5			2						2	2	2			80.085	75.825	4	5.9712E-09	39928	160513_QHF_FH_JSI10Kac_6	87.339	74.41			1.0068	1.0298	28.549	4	1	Median	1.3198	1.1129	44.475	2	1	Median	0.88157	1.0298	20.173	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	414930000	188490000	226440000	134700000	45682000	89018000	280230000	142810000	137430000	0	0	0	0	0	0	56632	220	53337	343697;343698;343699;343700	463507;463508;463509;463510	463510		94	3	
VSQMLILTPFQGQGHGAQLLETVHR	0	Unmodified	2759.4541	0.45410301	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	9.38	6.63		1	3						4	3	3	1	1	86.133	82.131	3;4	1.9159E-42	40649	160513_QHF_FH_JSI9Kac_6	164.79	157.76			1.1618	1.369	12.777	8	1	Linear	1.5411	1.2917	15.892	3	1	Plateau	1.1501	1.3585	13.085	3	0	Plateau	1.2855	1.2352	NaN	1	0	Median	1.1374	1.0591	NaN	1	0	Median	3370200000	1575400000	1794800000	901810000	379400000	522400000	1930200000	954050000	976160000	506540000	224670000	281870000	31664000	17288000	14376000	56633	220	53337	343701;343702;343703;343704;343705;343706;343707;343708	463511;463512;463513;463514;463515;463516;463517;463518	463516			8	
VSQNSLGEMTK	1	Unmodified	1192.5758	0.57578728	5398	Q9ULH0	KIDINS220	Kinase D-interacting substrate of 220 kDa	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			23.545	22.675	2	0.054925	19529	160511_QHF_FH_JSI10i_2	34.721	1.563			0.79713	0.98391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79713	0.98391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89141000	48220000	40921000	0	0	0	89141000	48220000	40921000	0	0	0	0	0	0	56634	5398	53338	343709	463519	463519			1	
VSQPEVGAAIK	1	Unmodified	1097.6081	0.60807369	5122	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		31.912	31.677	2	0.021432	28371	160511_QHF_FH_JSI11i_1	49.16	39.572			1.0414	1.0176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0414	1.0176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55248000	27714000	27534000	0	0	0	0	0	0	55248000	27714000	27534000	0	0	0	56635	5122	53339	343710	463520	463520			1	
VSQPIEGHAASFAQFK	1	Unmodified	1715.8631	0.86311917	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.96		8	8					1	5	6	5	6	5	52.649	49.363	2;3	8.5274E-30	41928	160511_QHF_FH_JSI12i_3	201.95	178.35			1.0574	1.072	15.538	22	1	Median	1.2802	1.0828	22.687	6	0	Median	1.0057	1.2078	19.2	5	1	Median	1.1378	1.0845	4.3486	6	0	Median	0.92169	0.95731	6.0987	5	0	Median	17879000000	7903200000	9976000000	1934700000	894810000	1039900000	2937900000	1431000000	1506900000	6382000000	2673300000	3708600000	6624600000	2904100000	3720500000	56636	2155	53340	343711;343712;343713;343714;343715;343716;343717;343718;343719;343720;343721;343722;343723;343724;343725;343726;343727;343728;343729;343730;343731;343732	463521;463522;463523;463524;463525;463526;463527;463528;463529;463530;463531;463532;463533;463534;463535;463536;463537;463538;463539;463540;463541;463542;463543;463544;463545;463546;463547;463548;463549;463550;463551;463552;463553;463554;463555;463556;463557;463558;463559;463560;463561;463562;463563;463564;463565;463566;463567;463568;463569;463570	463567			50	
VSQPTAEQAQAFK	1	Unmodified	1403.7045	0.70449327	968	P10398	ARAF	Serine/threonine-protein kinase A-Raf	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	31.216	30.614	2	0.00017561	27451	160511_QHF_FH_JSI12i_1	82.261	67.288			0.90746	0.8694	15.144	4	0	Median	0.90613	0.73205	NaN	1	0	Median	0.71995	0.85447	NaN	1	0	Median	0.90879	0.88458	NaN	1	0	Median	1.0343	1.0587	NaN	1	0	Median	221320000	106550000	114770000	51291000	24668000	26623000	53342000	29706000	23636000	58707000	25928000	32779000	57978000	26245000	31733000	56637	968	53341	343733;343734;343735;343736	463571;463572;463573;463574;463575;463576;463577	463572			7	
VSQSTSSLVDTSVSATSRPR	0	Unmodified	2064.0447	0.044724946	3452	Q8IY17	PNPLA6	Neuropathy target esterase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.591	38.09	3	0.023515	31108	160511_QHF_FH_JSI9i_3	29.766	19.978			1.3799	1.3218	5.9571	2	1	Median	1.7032	1.3787	NaN	1	0	Median	1.1181	1.2673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60222000	22592000	37630000	36909000	15613000	21296000	23313000	6978900	16334000	0	0	0	0	0	0	56638	3452	53342	343737;343738	463578;463579	463579			2	
VSQTPESLDFLK	1	Unmodified	1362.7031	0.70309628	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.582	65.981	2	3.2489E-07	59986	160511_QHF_FH_JSI11i_1	127.42	98.697			1.1985	1.2193	35.716	4	0	Median	1.0653	0.86046	NaN	1	0	Median	1.6096	1.9211	NaN	1	0	Median	1.0617	1.0294	NaN	1	0	Median	1.3483	1.4442	NaN	1	0	Median	1093700000	508850000	584840000	233420000	109690000	123720000	295950000	127050000	168900000	287500000	142560000	144940000	276820000	129550000	147270000	56639	2332	53343	343739;343740;343741;343742	463580;463581;463582;463583;463584;463585;463586;463587;463588	463582			9	
VSQVIMEK	1	Unmodified	932.5001	0.50010314	532	O75475	PSIP1	PC4 and SFRS1-interacting protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		24.035	23.69	2	0.026177	19778	160511_QHF_FH_JSI11i_2	52.255	26.361			0.69576	0.70389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69576	0.70389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	175540000	114120000	61426000	0	0	0	0	0	0	175540000	114120000	61426000	0	0	0	56640	532	53344	343743	463589	463589			1	
VSRDEAVNK	1	Unmodified	1016.5251	0.52507234	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.6	0.49		2	3							1	2	1	1	5.7226	5.4736	2	0.00011301	3408	160511_QHF_FH_JSI11i_3	108.57	76.635			0.98243	0.93866	20.067	5	1	Median	1.1029	0.93866	NaN	1	0	Median	0.94348	1.1155	35.479	2	1	Median	0.98243	0.92966	NaN	1	0	Median	0.9552	0.95394	NaN	1	0	Median	497160000	260640000	236520000	84088000	36156000	47932000	149530000	80414000	69117000	201870000	104960000	96917000	61666000	39111000	22555000	56641	3709	53345	343744;343745;343746;343747;343748	463590;463591;463592	463590			3	
VSRDTLYEAVR	0	Unmodified	1307.6834	0.68336389	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		4	4							4	4			34.934	33.718	2;3	8.3266E-06	28100	160511_QHF_FH_JSI10i_3	100.09	84.547			1.3022	1.4036	20.852	8	0	Median	1.2845	1.0074	31.418	4	0	Linear	1.1589	1.4036	1.8913	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1227700000	514570000	713170000	724910000	287050000	437870000	502820000	227520000	275310000	0	0	0	0	0	0	56642	2036	53346	343749;343750;343751;343752;343753;343754;343755;343756	463593;463594;463595;463596;463597;463598;463599;463600;463601;463602;463603	463596			11	
VSRLEEELANLK	1	Unmodified	1399.7671	0.76709352	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	58.036	57.905	3	0.002675	51329	160511_QHF_FH_JSI11i_3	51.463	36.902			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56643	2574	53347	343757;343758	463604;463605	463604			2	
VSSAEGAAK	1	Unmodified	818.4134	0.41339662	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	5.51	4	1	2		2	4				3	4	3	3	6.3121	1.9303	2	0.0011739	2751	160511_QHF_FH_JSI11i_1	79.474	43.079			0.97325	1.0145	73.495	13	2	Median	1.1486	0.90538	134.92	3	0	Plateau	0.83933	0.98701	23.647	4	0	Median	1.4469	1.4087	9.815	3	1	Median	0.73933	0.79025	16.668	3	1	Plateau	5896900000	2716500000	3180300000	1139300000	534550000	604760000	1439000000	758090000	680940000	1854600000	691250000	1163300000	1463900000	732630000	731310000	56644	825	53348	343759;343760;343761;343762;343763;343764;343765;343766;343767;343768;343769;343770;343771	463606;463607;463608;463609;463610;463611;463612;463613;463614;463615;463616;463617	463606			12	
VSSAEGAAKEEPK	2	Unmodified	1301.6463	0.64630969	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	8.8271	8.4482	3	0.011963	6014	160511_QHF_FH_JSI12i_2	40.801	28.225			1.0152	1.0182	44.369	5	0	Median	1.0393	0.89414	NaN	1	0	Median	0.55386	0.67345	NaN	1	0	Median	1.5253	1.5065	55.404	2	0	Median	0.96682	1.0655	NaN	1	0	Median	302450000	132640000	169820000	44368000	18116000	26252000	36385000	25090000	11295000	162770000	62408000	100370000	58929000	27025000	31904000	56645	825	53349	343772;343773;343774;343775;343776	463618;463619	463618			2	
VSSAEGAAKEEPK	2	Acetyl (K)	1343.6569	0.65687437	825	P05114	HMGN1	Non-histone chromosomal protein HMG-14	yes	yes	1	0	0	1				By MS/MS	12	0					1								1	23.817	16.768	3	0.011114	8540	160513_QHF_FH_JSI12Kac_2	38.799	30.07			1.3867	1.4963	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3867	1.4963	NaN	1	0	Median	1564800	530380	1034400	0	0	0	0	0	0	0	0	0	1564800	530380	1034400	56646	825	53349	343777	463620	463620	472		1	
VSSDEDLK	1	Unmodified	891.41854	0.41854158	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	10.954	10.368	2	0.042075	7830	160511_QHF_FH_JSI9i_1	39.022	18.74			0.90231	0.85223	16.179	2	0	Median	1.143	0.95553	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71229	0.7601	NaN	1	0	Median	465060000	210960000	254100000	207570000	86958000	120610000	0	0	0	0	0	0	257490000	124000000	133490000	56647	5687	53350	343778;343779	463621;463622	463622			2	
VSSDNVADLHEK	1	Unmodified	1312.6259	0.62590859	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.71	3	8	2				2	3		3	5	4	6	21.933	18.959	2;3	1.905E-05	16373	160511_QHF_FH_JSI10i_2	78.814	65.859			0.99478	1.0412	13.123	18	0	Median	1.0351	0.87936	3.2418	3	0	Median	0.8736	1.0684	12.367	5	0	Median	1.2203	1.2194	11.236	4	0	Median	0.98717	1.0412	3.7158	6	0	Median	4362100000	2142300000	2219800000	673000000	275270000	397720000	1325100000	745200000	579950000	1306700000	555710000	751030000	1057200000	566080000	491100000	56648	1303	53351	343780;343781;343782;343783;343784;343785;343786;343787;343788;343789;343790;343791;343792;343793;343794;343795;343796;343797	463623;463624;463625;463626;463627;463628;463629;463630;463631;463632;463633;463634;463635;463636;463637;463638;463639;463640;463641;463642;463643;463644;463645;463646	463646			24	
VSSDNVADLHEKYSGSTP	1	Acetyl (K)	1946.8858	0.88576469	1303	P28074	PSMB5	Proteasome subunit beta type-5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		60.913	51.386	3	0.030098	27034	160513_QHF_FH_JSI11Kac_3	31.818	27.647			0.70427	0.75922	131.71	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6275	1.9268	NaN	1	0	Median	0.30476	0.29916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11875000	7704600	4170500	0	0	0	4027100	1707900	2319200	7848100	5996700	1851300	0	0	0	56649	1303	53352	343798;343799	463647	463647			1	
VSSDVIDQK	1	Unmodified	989.50294	0.50293991	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.017	20.5	2	0.00012457	17705	160511_QHF_FH_JSI10i_1	101.64	36.606			1.1613	1.0832	27.562	4	0	Median	1.2534	1.0336	NaN	1	0	Median	1.1427	1.3597	NaN	1	0	Median	1.1802	1.1352	NaN	1	0	Median	0.68043	0.70727	NaN	1	0	Median	2211100000	1040100000	1171000000	573380000	236000000	337380000	572660000	239330000	333340000	582690000	281420000	301280000	482350000	283390000	198960000	56650	5494	53353	343800;343801;343802;343803	463648;463649;463650;463651;463652;463653	463651			6	
VSSFEEK	1	Unmodified	824.3916	0.39159855	1504	P40926	MDH2	Malate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.79	3	1				1	1			2	1	1	2	13.853	11.122	2	0.032319	9179	160511_QHF_FH_JSI9i_1	52.786	24.363			1.3995	1.5253	54.316	6	4	Median	1.8525	1.5026	71.013	2	2	Median	1.7778	2.0634	NaN	1	1	Median	2.3627	2.3265	NaN	1	1	Median	0.81487	0.8799	35.077	2	0	Median	3939900000	1598600000	2341300000	1355800000	532710000	823070000	1072400000	432640000	639720000	1461100000	603970000	857120000	50664000	29304000	21360000	56651	1504	53354	343804;343805;343806;343807;343808;343809	463654;463655;463656;463657;463658	463656			5	
VSSGYVPPPVATPFSSK	1	Unmodified	1718.8879	0.88793694	2723	Q15942	ZYX	Zyxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	67.759	67.188	2;3	5.1868E-06	61171	160511_QHF_FH_JSI12i_1	112.43	96.176			1.0207	1.0782	18.712	10	3	Median	1.1599	0.95702	29.444	2	0	Median	0.80306	0.92521	36.105	2	0	Median	1.2381	1.2076	17.256	3	2	Plateau	1.0147	1.0814	1.7973	3	1	Plateau	521530000	252700000	268840000	82947000	37361000	45586000	88512000	45368000	43144000	187670000	92692000	94974000	162410000	77276000	85133000	56652	2723	53355	343810;343811;343812;343813;343814;343815;343816;343817;343818;343819	463659;463660;463661;463662;463663;463664;463665;463666;463667;463668;463669;463670;463671;463672;463673;463674	463664			15	
VSSHANAAQER	0	Unmodified	1168.5585	0.55849773	3937	Q969G5	PRKCDBP	Protein kinase C delta-binding protein	yes	yes	0	0	0	0	By matching	By MS/MS			2	0		2								1	1			4.702	4.3016	2	0.046632	2332	160511_QHF_FH_JSI10i_2	36.424	17.33			0.8406	0.85544	24.415	2	0	Median	0.83538	0.7198	NaN	1	0	Median	0.84585	1.0166	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108770000	61835000	46934000	55973000	29038000	26935000	52796000	32797000	19999000	0	0	0	0	0	0	56653	3937	53356	343820;343821	463675	463675			1	
VSSHLVLR	0	Unmodified	909.5396	0.53960019	4584	Q9C0D5	TANC1	Protein TANC1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			44.939	36.327	3	0.035467	20125	160513_QHF_FH_JSI10Kac_6	27.254	0			0.18814	0.22556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.18814	0.22556	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6949000	6546300	402720	0	0	0	6949000	6546300	402720	0	0	0	0	0	0	56654	4584	53357	343822	463676	463676			1	
VSSLGKDWHK	2	Acetyl (K)	1197.6142	0.6142217	1789	P52943	CRIP2	Cysteine-rich protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.64							1	3	8	2	3	4	3	40.893	31.532	2;3	0.00016206	17518	160513_QHF_FH_JSI10Kac_6	99.815	86.778			0.93329	0.94955	55.201	11	1	Median	1.0489	0.91619	5.0582	2	0	Median	0.93329	1.1196	31.502	3	0	Plateau	0.83554	0.80899	6.5711	3	0	Median	0.987	1.0586	92.837	3	1	Plateau	495330000	256270000	239060000	89214000	38706000	50508000	180430000	93988000	86443000	119610000	68152000	51460000	106080000	55428000	50647000	56655	1789	53358	343823;343824;343825;343826;343827;343828;343829;343830;343831;343832;343833;343834	463677;463678;463679;463680;463681;463682;463683;463684;463685;463686;463687;463688;463689;463690	463690	1803		14	
VSSLQAEPLPR	0	Unmodified	1195.6561	0.65608651	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	40.152	39.292	2	0.0081932	33652	160511_QHF_FH_JSI11i_2	59.84	38.376			1.1068	1.1591	15.631	5	3	Median	1.8532	1.5693	NaN	1	1	Median	0.94202	1.1591	NaN	1	0	Median	1.2296	1.26	18.77	2	2	Median	1.0612	1.1535	NaN	1	0	Median	144590000	65261000	79325000	29481000	11034000	18447000	20055000	12436000	7619800	70137000	29972000	40165000	24913000	11819000	13093000	56656	4678	53359	343835;343836;343837;343838;343839	463691;463692;463693;463694	463692			4	
VSSPLPSPSAMTDAANSQAAAK	1	Unmodified	2100.0157	0.015733004	3813	Q8WXI9	GATAD2B	Transcriptional repressor p66-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	2	3	60.032	59.387	2;3	2.8991E-10	53676	160511_QHF_FH_JSI10i_1	112.17	101.53			0.96931	0.882	12.283	8	2	Median	1.036	0.84733	3.8565	2	1	Median	0.70658	0.80796	8.5232	2	0	Median	1.1356	1.0727	1.9425	2	1	Median	0.91099	0.929	5.5276	2	0	Median	275400000	143020000	132380000	69053000	35989000	33064000	69084000	38521000	30563000	71528000	34380000	37149000	65738000	34132000	31606000	56657	3813	53360	343840;343841;343842;343843;343844;343845;343846;343847;343848	463695;463696;463697;463698;463699	463698			5	
VSSQNLVAIPVYVK	1	Unmodified	1515.8661	0.86607929	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.42	3.82	8	3						1		3	2	4	3	76.027	75.435	2;3	0.00019942	66182	160511_QHF_FH_JSI11i_2	90.653	79.489			1.1319	1.109	23.398	11	1	Median	1.3712	1.109	34.157	3	1	Plateau	0.92482	1.0774	3.1641	2	0	Median	1.079	1.003	25.671	3	0	Median	1.1319	1.1815	13.253	3	0	Median	439670000	207170000	232500000	84424000	32555000	51869000	78836000	44883000	33953000	145210000	71229000	73981000	131200000	58502000	72694000	56658	5535	53361	343849;343850;343851;343852;343853;343854;343855;343856;343857;343858;343859;343860	463700;463701;463702;463703;463704;463705;463706;463707;463708;463709;463710;463711;463712;463713;463714;463715;463716;463717;463718;463719	463718			20	
VSSQSFSEIER	0	Unmodified	1267.6044	0.60444487	3555	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS		1.5	0.5	2	2								1	1	2		36.001	35.48	2	0.0021052	30353	160511_QHF_FH_JSI11i_2	58.676	47.811			1.0256	1.0119	3.7832	4	0	Median	1.208	1.019	NaN	1	0	Median	0.80724	0.94358	NaN	1	0	Median	1.0256	1.0145	1.3447	2	0	Median	NaN	NaN	NaN	0	0	Median	326710000	161190000	165520000	53363000	24239000	29124000	91831000	46342000	45489000	181520000	90608000	90910000	0	0	0	56659	3555	53362	343861;343862;343863;343864	463720	463720			1	
VSSSIQHPETPLHISGFHLPYK	1	Unmodified	2473.2754	0.27539358	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	69.3	69.151	5	0.06135	59609	160511_QHF_FH_JSI12i_3	9.6482	5.9158			0.8378	0.80871	19.05	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97158	0.92533	NaN	1	0	Median	0.72245	0.70679	NaN	1	0	Median	71993000	40608000	31385000	0	0	0	0	0	0	26620000	14378000	12242000	45373000	26230000	19143000	56660	5414	53363	343865;343866	463721	463721			1	
VSSSYPVEPK	1	Unmodified	1091.5499	0.5498901	4425	Q9BTX1	NDC1	Nucleoporin NDC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		23.859	23.305	2	0.0038198	20366	160511_QHF_FH_JSI10i_1	56.013	36.31			1.1511	1.101	4.2358	3	0	Median	1.2676	1.0369	NaN	1	0	Median	0.94043	1.101	NaN	1	0	Median	1.1511	1.1252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	402020000	186830000	215180000	137780000	52093000	85690000	92554000	51457000	41097000	171680000	83283000	88397000	0	0	0	56661	4425	53364	343867;343868;343869	463722;463723	463722			2	
VSSTTSELTK	1	Unmodified	1051.5397	0.53971935	2574	Q14789	GOLGB1	Golgin subfamily B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.894	14.44	2	0.037206	12152	160511_QHF_FH_JSI12i_1	38.303	22.1			1.1666	1.0836	22.812	4	0	Median	1.3228	1.107	NaN	1	0	Median	0.69762	0.84918	NaN	1	0	Median	1.5245	1.4794	NaN	1	0	Median	1.0288	1.0608	NaN	1	0	Median	250770000	122810000	127960000	38056000	14396000	23660000	65706000	32366000	33340000	76006000	41037000	34969000	71003000	35011000	35993000	56662	2574	53365	343870;343871;343872;343873	463724	463724			1	
VSSTWTTTTSATGLPTLEPAPVRR	0	Unmodified	2528.3235	0.32346599	2535	Q14432	PDE3A	cGMP-inhibited 3',5'-cyclic phosphodiesterase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			72.029	70.56	3	0.00011002	58063	160511_QHF_FH_JSI9i_3	48.229	40.14			0.82616	0.80076	25.474	2	0	Median	1.1652	0.9588	NaN	1	0	Median	0.5858	0.66876	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65888000	33290000	32598000	42268000	17883000	24385000	23620000	15407000	8212900	0	0	0	0	0	0	56663	2535	53366	343874;343875	463725;463726	463726			2	
VSSVPNTSQSYAK	1	Unmodified	1366.6729	0.67285879	2602	Q15018	FAM175B	BRISC complex subunit Abro1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.284	21.753	2	5.5657E-05	18743	160511_QHF_FH_JSI11i_1	109.24	81.223			1.0609	1.0111	10.137	4	0	Median	1.2997	1.0649	NaN	1	0	Median	0.81327	0.95998	NaN	1	0	Median	0.98724	0.94047	NaN	1	0	Median	1.14	1.1711	NaN	1	0	Median	404330000	191880000	212460000	100910000	37566000	63342000	96117000	51944000	44173000	107010000	45685000	61323000	100300000	56683000	43618000	56664	2602	53367	343876;343877;343878;343879	463727;463728;463729;463730;463731;463732	463728			6	
VSSVSSSALVSSLHMMK	1	Unmodified	1748.8801	0.88009115	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.55	6.4		2	5						4	3	3	4	1	71.037	67.445	3	5.5961E-17	35304	160513_QHF_FH_JSI9Kac_6	139.49	125.63			1.0578	1.0952	24.311	11	6	Median	1.4535	1.2441	8.172	3	1	Median	0.93125	1.0583	30.124	3	1	Plateau	0.96098	0.89099	18.691	4	4	Median	0.97023	0.98462	NaN	1	0	Median	1165200000	582960000	582270000	204990000	86872000	118120000	186200000	97567000	88629000	538980000	265970000	273010000	235060000	132550000	102510000	56665	5234	53368	343880;343881;343882;343883;343884;343885;343886;343887;343888;343889;343890	463733;463734;463735;463736;463737;463738;463739;463740;463741;463742;463743;463744;463745;463746;463747;463748;463749	463744			17	
VSSYFLGK	1	Unmodified	899.47527	0.4752686	5445	Q9UNQ0	ABCG2	ATP-binding cassette sub-family G member 2	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	41.015	40.91	2	0.024604	35099	160511_QHF_FH_JSI12i_3	42.869	7.3755			0.96464	0.93913	17.091	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1262	1.0598	NaN	1	0	Median	0.82622	0.83223	NaN	1	0	Median	166710000	72595000	94113000	0	0	0	0	0	0	85031000	32865000	52165000	81677000	39730000	41948000	56666	5445	53369	343891;343892	463750	463750			1	
VSSYPVALIPGQFQEYYK	1	Unmodified	2088.0568	0.056793183	3758	Q8WUB8	PHF10	PHD finger protein 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	95.589	95.185	2;3	0.0003749	83502	160511_QHF_FH_JSI11i_2	82.362	45.515			1.2476	1.319	52.127	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73087	0.71516	54.188	2	2	Median	1.2476	1.319	NaN	1	1	Median	31611000	13602000	18008000	0	0	0	0	0	0	18414000	8142900	10271000	13197000	5459600	7737400	56667	3758	53370	343893;343894;343895	463751;463752;463753	463753			3	
VSTAVLSITAK	1	Unmodified	1088.6441	0.64412484	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.54		4	3					3	3	3	4	3	3	56.549	51.408	2	0.00012316	44175	160511_QHF_FH_JSI12i_3	97.456	74.716			1.008	0.8931	26.458	13	3	Median	1.1607	1.0054	19.346	3	1	Median	0.8395	1.3111	29.422	4	0	Linear	0.8036	0.81804	24.672	3	1	Median	1.0203	1.053	37.682	3	1	Plateau	819470000	398510000	420970000	164170000	71409000	92758000	195320000	97826000	97498000	198880000	98480000	100400000	261110000	130790000	130310000	56668	4272	53371	343896;343897;343898;343899;343900;343901;343902;343903;343904;343905;343906;343907;343908	463754;463755;463756;463757;463758;463759;463760;463761;463762;463763;463764;463765;463766;463767;463768;463769	463769			15	
VSTEVDAR	0	Unmodified	875.43486	0.43486035	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				2	1	2	2	13.106	8.2809	2	0.0014529	8286	160511_QHF_FH_JSI9i_1	89.296	66.804			1.0482	1.0683	11.174	7	0	Median	1.2553	1.0296	5.2156	2	0	Median	1.0482	1.2363	NaN	1	0	Median	1.0281	1.0103	9.1908	2	0	Median	0.93421	1.0099	17.444	2	0	Median	5763700000	3062300000	2701300000	1690200000	809570000	880650000	1639900000	967000000	672910000	1346600000	670530000	676070000	1087000000	615250000	471710000	56669	1471	53372	343909;343910;343911;343912;343913;343914;343915	463770;463771;463772;463773;463774;463775;463776;463777;463778;463779;463780	463779			11	
VSTHVIENIYLPAAQTMNSGTFNTTVDIK	1	Unmodified	3163.586	0.58596462	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.82	93.815	3	9.9257E-16	81349	160511_QHF_FH_JSI12i_3	90.974	84.944			0.87413	0.92516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87413	0.92516	NaN	1	0	Median	18568000	8971300	9597100	0	0	0	0	0	0	0	0	0	18568000	8971300	9597100	56670	409	53373	343916	463781;463782;463783	463783			3	
VSTLAGPSSDDENEEESKPEKEDEPQEDAK	3	Unmodified	3288.4277	0.42772846	5409	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	29.428	29.058	4	4.842E-06	26043	160511_QHF_FH_JSI12i_1	45.125	42.96			1.0864	1.0391	23.393	3	2	Median	NaN	NaN	NaN	0	0	Median	0.67706	0.76337	NaN	1	1	Median	1.0864	1.0391	NaN	1	1	Median	1.1706	1.2079	NaN	1	0	Median	102950000	56296000	46651000	0	0	0	33774000	25429000	8345300	22410000	8056900	14353000	46762000	22810000	23953000	56671	5409	53374	343917;343918;343919	463784;463785;463786;463787	463785			4	
VSTLGLYMEANR	0	Unmodified	1352.6758	0.67583567	4946	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3		2	2	2	61.85	57.965	2	3.3126E-05	49833	160511_QHF_FH_JSI12i_3	105.86	95.34			0.90069	0.86565	24.379	5	2	Linear	NaN	NaN	NaN	0	0	Median	0.94963	1.0889	7.832	2	1	Median	1.1988	1.1325	46.599	2	1	Median	0.83545	0.97795	NaN	1	0	Median	228950000	120220000	108730000	0	0	0	61231000	32496000	28735000	94910000	46543000	48367000	72810000	41182000	31628000	56672	4946	53375	343920;343921;343922;343923;343924;343925	463788;463789;463790;463791;463792;463793;463794;463795	463792			8	
VSTLPAITLK	1	Unmodified	1041.6434	0.64339656	869	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	6.15	4	4					2	2		2	4	4	2	66.516	62.442	2	1.0811E-05	54218	160511_QHF_FH_JSI11i_2	104.2	54.074			0.97744	1.0121	20.206	12	0	Median	1.1524	0.98242	7.1169	2	0	Median	0.7981	0.96264	26.585	4	0	Median	1.0032	0.97966	20.777	4	0	Median	1.0053	1.0806	1.7864	2	0	Median	788010000	390230000	397780000	147360000	64678000	82682000	189180000	103490000	85687000	258190000	123770000	134420000	193290000	98295000	94992000	56673	869	53376	343926;343927;343928;343929;343930;343931;343932;343933;343934;343935;343936;343937	463796;463797;463798;463799;463800;463801;463802;463803;463804;463805;463806;463807;463808;463809;463810	463806			15	
VSTSGPR	0	Unmodified	702.36605	0.3660525	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.35	2	3	2				2	4		2	2	5	4	5.7141	1.5316	2	0.0099713	3110	160511_QHF_FH_JSI9i_2	76.847	3.8077		+	1.0277	1.0756	11.966	13	0	Median	1.2909	1.0839	4.804	2	0	Median	0.8154	0.97594	23.938	2	0	Median	1.0447	1.0322	12.126	5	0	Median	1.0055	1.0936	11.006	4	0	Median	18908000000	9379600000	9528700000	3002500000	1377200000	1625200000	3263200000	1640800000	1622400000	7336200000	3645000000	3691200000	5306300000	2716500000	2589800000	56674	51	53377	343938;343939;343940;343941;343942;343943;343944;343945;343946;343947;343948;343949;343950	463811;463812;463813;463814;463815;463816;463817;463818;463819;463820;463821;463822;463823	463817			13	
VSTSSQESK	1	Unmodified	951.4509	0.45090434	3128	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.7926	4.4786	2	0.014862	2380	160511_QHF_FH_JSI12i_1	44.863	18.261			0.91303	0.95432	23.104	4	0	Median	1.3296	1.1	NaN	1	0	Median	0.70836	0.82792	NaN	1	0	Median	1.1768	1.1593	NaN	1	0	Median	0.69321	0.71396	NaN	1	0	Median	697310000	381130000	316180000	76096000	39027000	37069000	195640000	116430000	79210000	234110000	118280000	115830000	191460000	107390000	84072000	56675	3128	53378	343951;343952;343953;343954	463824;463825;463826	463825			3	
VSTTLNVAQAYYAR	0	Unmodified	1555.7995	0.79945628	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	57.847	56.502	2	0.001046	48456	160511_QHF_FH_JSI12i_2	81.865	65.233			1.4198	1.5547	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4198	1.5547	NaN	1	1	Median	19368000	9206300	10162000	0	0	0	0	0	0	0	0	0	19368000	9206300	10162000	56676	376	53379	343955	463827	463827			1	
VSTVAGIGIQGTDK	1	Unmodified	1344.7249	0.72489436	3588	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		45.547	45.143	2	0.006469	40756	160511_QHF_FH_JSI11i_1	61.419	50.268			0.80964	0.77685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80964	0.77685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37439000	21539000	15900000	0	0	0	0	0	0	37439000	21539000	15900000	0	0	0	56677	3588	53380	343956	463828	463828			1	
VSTVFWK	1	Unmodified	865.46979	0.46978929	2502	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	52.867	51.915	2	0.031087	45757	160511_QHF_FH_JSI11i_3	51.787	42.038			1.1683	1.1782	27.17	5	0	Median	1.7136	1.3759	NaN	1	0	Median	1.1683	1.3595	NaN	1	0	Median	1.2122	1.1782	NaN	1	0	Median	0.83381	0.86719	28.75	2	0	Median	2303100000	1136300000	1166700000	227910000	89463000	138450000	330340000	158160000	172180000	583790000	302500000	281280000	1161000000	586220000	574830000	56678	2502	53381	343957;343958;343959;343960;343961	463829;463830;463831;463832;463833;463834;463835	463830			7	
VSTVMDTVGR	0	Unmodified	1063.5332	0.53319418	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		32.113	31.397	2	0.0035443	26728	160511_QHF_FH_JSI11i_2	65.305	48.529			1.047	0.97114	0.57377	2	0	Median	1.1325	0.97508	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.96798	0.9672	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102110000	49417000	52696000	38538000	18215000	20324000	0	0	0	63575000	31202000	32373000	0	0	0	56679	4777	53382	343962;343963	463836;463837	463837			2	
VSVADHSLHLSK	1	Unmodified	1291.6884	0.68844927	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	5.45		17	25						11	11	17	15	10	32.321	29.846	2;3;4	1.8712E-28	24774	160511_QHF_FH_JSI12i_3	161.19	133.45			0.94746	0.95519	88.578	48	12	Median	1.2752	1.0457	80.178	11	2	Median	0.61879	0.76285	90.221	14	5	Median	0.81758	0.80513	68.181	14	4	Median	1.0157	1.0842	113.36	9	1	Median	27765000000	13625000000	14139000000	2770300000	1121000000	1649300000	5097500000	2770600000	2326800000	11249000000	5695700000	5553500000	8647800000	4038000000	4609800000	56680	2364	53383	343964;343965;343966;343967;343968;343969;343970;343971;343972;343973;343974;343975;343976;343977;343978;343979;343980;343981;343982;343983;343984;343985;343986;343987;343988;343989;343990;343991;343992;343993;343994;343995;343996;343997;343998;343999;344000;344001;344002;344003;344004;344005;344006;344007;344008;344009;344010;344011;344012;344013;344014;344015;344016	463838;463839;463840;463841;463842;463843;463844;463845;463846;463847;463848;463849;463850;463851;463852;463853;463854;463855;463856;463857;463858;463859;463860;463861;463862;463863;463864;463865;463866;463867;463868;463869;463870;463871;463872;463873;463874;463875;463876;463877;463878;463879;463880;463881;463882;463883;463884;463885;463886;463887;463888;463889;463890;463891;463892;463893;463894;463895;463896;463897;463898;463899;463900;463901;463902;463903;463904;463905;463906;463907;463908;463909;463910;463911;463912;463913;463914;463915;463916;463917;463918;463919;463920;463921;463922;463923;463924;463925;463926	463917			89	
VSVADHSLHLSKAK	2	Acetyl (K)	1532.8311	0.83109076	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	3	1	45.723	36.422	2;3;4	1.7269E-07	19931	160513_QHF_FH_JSI11Kac_6	161.1	127.88			0.29597	0.28628	198.71	5	1	Median	NaN	NaN	NaN	0	0	Median	5.6732	6.7616	175.58	2	1	Median	0.2647	0.25256	17.722	2	0	Median	0.25695	0.28294	NaN	1	0	Median	397720000	277530000	120180000	0	0	0	61442000	11072000	50371000	321760000	254870000	66892000	14514000	11596000	2918800	56681	2364	53384	344017;344018;344019;344020;344021;344022	463927;463928;463929;463930;463931;463932;463933	463930	2435		7	
VSVEYTEK	1	Unmodified	953.47058	0.47057715	3916	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			21.511	21.242	2	0.038684	18451	160511_QHF_FH_JSI10i_1	48.283	24.328			0.83396	0.98051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.83396	0.98051	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	134770000	74283000	60491000	0	0	0	134770000	74283000	60491000	0	0	0	0	0	0	56682	3916	53385	344023	463934	463934			1	
VSVFFGGLSIK	1	Unmodified	1152.6543	0.6542956	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	86.982	83.824	2	2.8258E-09	76051	160511_QHF_FH_JSI12i_3	127.76	94.924			0.91637	0.87994	17.562	12	3	Median	1.0194	0.85975	9.2668	3	1	Median	0.80348	0.99857	18.411	3	1	Median	1.272	1.2006	20.468	3	1	Plateau	0.76269	0.78056	16.448	3	0	Median	3883900000	1950700000	1933200000	1046000000	478960000	567050000	1284400000	663590000	620760000	893450000	465410000	428030000	660070000	342730000	317340000	56683	97	53386	344024;344025;344026;344027;344028;344029;344030;344031;344032;344033;344034;344035	463935;463936;463937;463938;463939;463940;463941;463942;463943;463944;463945;463946;463947;463948;463949;463950	463946			16	
VSVFFGGLSIKK	2	Unmodified	1280.7493	0.74925861	97	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.4			10						7	6	5	3	3	74.513	70.292	2;3	0.00030549	58828	160511_QHF_FH_JSI9i_3	74.162	63.011			0.76846	0.45528	28.767	13	5	Linear	0.72898	0.60423	22.881	4	1	Linear	0.64888	0.75892	43.247	4	1	Median	0.93953	0.87878	12.217	3	2	Median	0.84059	0.87508	19.941	2	1	Median	1608000000	942650000	665380000	415660000	242370000	173290000	596550000	394450000	202110000	279390000	142480000	136910000	316420000	163350000	153080000	56684	97	53387	344036;344037;344038;344039;344040;344041;344042;344043;344044;344045;344046;344047;344048;344049;344050;344051;344052	463951;463952;463953;463954;463955;463956;463957;463958;463959;463960;463961;463962;463963;463964;463965	463957			14	
VSVGAPDLSLEASEGSIK	1	Unmodified	1757.9047	0.90470922	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.866	69.316	2;3	8.3598E-07	62934	160511_QHF_FH_JSI11i_1	145.6	130.92			0.92374	0.89273	14.641	8	1	Median	0.88637	0.71705	13.296	2	1	Median	0.75669	0.88126	5.6983	2	0	Median	0.92374	0.89273	2.8047	2	0	Median	0.99365	1.0216	1.7362	2	0	Median	703100000	384240000	318850000	109530000	61511000	48020000	269320000	149920000	119400000	138040000	66424000	71614000	186200000	106380000	79820000	56685	2286	53388	344053;344054;344055;344056;344057;344058;344059;344060	463966;463967;463968;463969;463970;463971;463972;463973;463974;463975;463976;463977	463967			12	
VSVGEFSAEGEGNSK	1	Unmodified	1495.6791	0.67906638	5004	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		40.165	39.796	2	0.0027783	35685	160511_QHF_FH_JSI10i_1	66.989	52.298			0.78741	0.92455	22.068	3	3	Median	NaN	NaN	NaN	0	0	Median	0.67443	0.77882	24.259	2	2	Median	1.0027	0.99054	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81129000	39382000	41746000	0	0	0	53098000	27137000	25961000	28030000	12246000	15785000	0	0	0	56686	5004	53389	344061;344062;344063	463978;463979;463980	463979			3	
VSVGIHK	1	Unmodified	738.43882	0.43882351	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	14.09	13.754	2	0.013281	10654	160511_QHF_FH_JSI12i_3	70.912	46.94			1.1188	1.0914	68.125	5	2	Median	1.4264	1.1544	NaN	1	0	Median	0.73166	0.82192	NaN	1	0	Median	1.1188	1.0914	NaN	1	0	Median	1.298	1.3127	130.72	2	2	Median	2854500000	1251500000	1602900000	401600000	152620000	248970000	436390000	210480000	225910000	528940000	272750000	256190000	1487500000	615680000	871860000	56687	1242	53390	344064;344065;344066;344067;344068	463981;463982;463983	463983			3	
VSVHVIEGDHR	0	Unmodified	1246.6418	0.64183343	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		7	21							6	5	7	10	20.911	20.419	2;3;4	9.8515E-06	16105	160511_QHF_FH_JSI12i_3	108.43	85.691			1.0428	0.94963	26.975	26	5	Median	1.1412	0.93661	17.349	6	2	Median	0.93144	1.0634	13.887	5	1	Median	0.76066	0.71163	28.358	6	0	Median	1.0379	1.747	31.659	9	2	Linear	2690300000	1375500000	1314800000	242820000	121380000	121440000	425270000	208320000	216950000	884740000	514240000	370500000	1137500000	531590000	605890000	56688	1650	53391	344069;344070;344071;344072;344073;344074;344075;344076;344077;344078;344079;344080;344081;344082;344083;344084;344085;344086;344087;344088;344089;344090;344091;344092;344093;344094;344095;344096	463984;463985;463986;463987;463988;463989;463990;463991;463992;463993;463994;463995;463996;463997;463998;463999;464000;464001;464002;464003;464004;464005;464006;464007;464008;464009	464003			24	
VSVHVLAR	0	Unmodified	879.52904	0.5290355	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	2	1	29.923	24.477	3	0.0034199	20117	160511_QHF_FH_JSI10i_3	44.377	17.684			1.0838	1.1405	19.295	7	0	Median	1.2012	0.99529	20.491	2	0	Median	0.79902	0.93954	35.58	2	0	Median	1.2321	1.168	3.3638	2	0	Median	1.0008	1.0904	NaN	1	0	Median	535700000	258360000	277340000	203890000	91531000	112360000	206570000	109130000	97442000	103350000	46806000	56541000	21886000	10889000	10997000	56689	1060	53392	344097;344098;344099;344100;344101;344102;344103	464010;464011;464012;464013;464014;464015;464016;464017;464018;464019	464010			10	
VSVINTVDTSHEDMIHDAQMDYYGTR	0	Acetyl (Protein N-term)	3038.3386	0.33860006	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	1	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.786	4	3	2							1	1	4	3	88.486	88.08	3	3.7758E-113	80109	160511_QHF_FH_JSI10i_1	193.54	181.57			0.090198	0.10631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.090198	0.10631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	256230000	241170000	15057000	0	0	0	256230000	241170000	15057000	0	0	0	0	0	0	56690	1860	53393	344104;344105;344106;344107;344108;344109;344110;344111;344112	464020;464021;464022;464023;464024;464025;464026;464027;464028;464029;464030;464031;464032;464033;464034;464035;464036;464037;464038;464039;464040	464033			21	
VSVINTVDTSHEDMIHDAQMDYYGTR	0	Acetyl (Protein N-term);Oxidation (M)	3054.3335	0.33351468	1860	P55735	SEC13	Protein SEC13 homolog	yes	yes	0	1	1	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									1	1	3	83.17	82.515	3	1.1827E-12	75253	160511_QHF_FH_JSI11i_1	88.222	76.48			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56691	1860	53393	344113;344114;344115;344116;344117	464041;464042;464043;464044;464045;464046	464041		1541;1542	6	
VSVLDYLSYAVYQQGDLDK	1	Unmodified	2175.0736	0.073565459	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	96.755	87.501	3	5.6305E-07	47724	160513_QHF_FH_JSI12Kac_6	89.846	80.75			0.77409	0.72793	28.538	2	0	Median	0.70744	0.59491	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84702	0.89069	NaN	1	0	Median	322780000	201310000	121470000	128570000	81019000	47550000	0	0	0	0	0	0	194220000	120290000	73920000	56692	1035	53394	344118;344119	464047	464047			1	
VSVLNVAVLENPSPFHSPFR	0	Unmodified	2208.1691	0.1691376	5043	Q9NVP2	ASF1B	Histone chaperone ASF1B	yes	yes	0	0	0	0	By MS/MS	By MS/MS			7.33	6.13			2						1	1	2			96.214	94.182	3	2.6379E-11	82953	160511_QHF_FH_JSI10i_3	127.32	117.22			1.0618	1.001	16.233	3	1	Median	1.1958	1.001	NaN	1	0	Median	0.91921	1.0645	22.402	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	268110000	142310000	125800000	33726000	12006000	21719000	234390000	130310000	104080000	0	0	0	0	0	0	56693	5043	53395	344120;344121;344122	464048;464049;464050;464051	464048			4	
VSVNDFIIK	1	Unmodified	1033.5808	0.5807963	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	71.163	70.275	2	0.00067613	60433	160511_QHF_FH_JSI12i_2	76.221	37.259			0.81791	0.97611	14.321	3	0	Median	NaN	NaN	NaN	0	0	Median	0.79348	0.97611	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91688	0.97292	20.251	2	0	Median	194530000	109470000	85063000	0	0	0	114090000	62971000	51118000	0	0	0	80445000	46500000	33946000	56694	122	53396	344123;344124;344125	464052;464053;464054;464055;464056	464053			5	
VSVNGAVVLEEPVGELR	0	Unmodified	1765.9574	0.95741349	241	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	1	1	2	77.978	77.387	2	6.9339E-08	70112	160511_QHF_FH_JSI10i_1	130.24	108.68			0.34323	0.35856	43.788	5	5	Median	0.2458	0.21731	NaN	1	1	Median	0.5243	0.62311	NaN	1	1	Median	0.34323	0.33724	NaN	1	1	Median	0.42956	0.46187	35.804	2	2	Median	237440000	167960000	69479000	32697000	26786000	5911400	74728000	49259000	25469000	45057000	29266000	15791000	84960000	62652000	22308000	56695	241	53397	344126;344127;344128;344129;344130	464057;464058;464059;464060;464061	464060			5	
VSVPDEMSADLEK	1	Unmodified	1418.6599	0.65991084	5164	Q9NZN5	ARHGEF12	Rho guanine nucleotide exchange factor 12	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	58.17	57.644	2	0.0059567	52028	160511_QHF_FH_JSI10i_1	52.344	18.458			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56696	5164	53398	344131;344132	464062;464063	464063			2	
VSVPLIAQGNSYPSETTVK	1	Unmodified	1989.0419	0.0418714	983	P11047	LAMC1	Laminin subunit gamma-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	70.231	69.637	2	0.00036257	63216	160511_QHF_FH_JSI11i_1	63.76	55.031			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8867300	3660800	5206500	0	0	0	0	0	0	0	0	0	8867300	3660800	5206500	56697	983	53399	344133;344134;344135	464064;464065;464066	464064			3	
VSVPLLK	1	Unmodified	754.49528	0.49527576	4424	Q9BTW9	TBCD	Tubulin-specific chaperone D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	55.344	54.39	2	0.02555	47899	160511_QHF_FH_JSI10i_2	54.525	9.9143			0.86881	0.90818	2.1034	4	0	Median	1.0412	0.90168	NaN	1	0	Median	0.74022	0.89253	NaN	1	0	Median	0.88208	0.91471	NaN	1	0	Median	0.85575	0.9369	NaN	1	0	Median	262960000	149460000	113500000	56290000	31033000	25256000	52388000	32320000	20069000	91986000	50912000	41073000	62291000	35190000	27101000	56698	4424	53400	344136;344137;344138;344139	464067;464068;464069;464070	464070			4	
VSVPSNLSYGEWLHGFEK	1	Unmodified	2048.0003	0.0003409361	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	3	2	3	88.964	88.498	2;3	2.6208E-23	76889	160511_QHF_FH_JSI12i_3	159.18	145.75			1.0629	1.0145	17.738	8	1	Median	1.2097	1.0644	NaN	1	0	Median	1.0147	1.1869	31.949	2	1	Median	1.0961	1.0743	20.328	2	0	Median	0.9616	0.96702	13.051	3	0	Median	1592900000	812090000	780860000	128940000	50421000	78520000	279190000	149500000	129690000	107280000	63382000	43899000	1077500000	548790000	528750000	56699	3328	53401	344140;344141;344142;344143;344144;344145;344146;344147;344148	464071;464072;464073;464074;464075;464076;464077;464078;464079;464080;464081;464082;464083;464084;464085;464086;464087;464088;464089;464090	464088			20	
VSVPSNLSYGEWLHGFEKK	2	Acetyl (K)	2218.1059	0.10586864	3328	Q86UP2	KTN1	Kinectin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		85.07	75.753	3	1.5112E-07	41963	160513_QHF_FH_JSI11Kac_6	104.63	90.322			0.31339	0.30652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31339	0.30652	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88037000	62779000	25258000	0	0	0	0	0	0	88037000	62779000	25258000	0	0	0	56700	3328	53402	344149	464091	464091	2838		1	
VSVQNGSIHQK	1	Unmodified	1195.6309	0.63093439	3291	Q7Z739	YTHDF3	YTH domain-containing family protein 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	1	3	10.871	10.934	2;3	7.9369E-06	8190	160511_QHF_FH_JSI12i_3	109.44	83.055			0.65447	0.65118	8.3802	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81476	0.76078	NaN	1	0	Median	0.69389	0.69554	9.3202	2	1	Median	441100000	239830000	201270000	0	0	0	0	0	0	49480000	27828000	21652000	391620000	212010000	179620000	56701	3291	53403	344150;344151;344152;344153;344154	464092;464093;464094;464095;464096;464097	464095			6	
VSVSATPGHTK	1	Unmodified	1082.572	0.57202253	4621	Q9H089	LSG1	Large subunit GTPase 1 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	10.716	10.763	2	9.2713E-07	8025	160511_QHF_FH_JSI12i_3	119.53	101.71			0.49604	0.48514	33.275	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64791	0.61384	NaN	1	1	Median	0.37977	0.38343	NaN	1	1	Median	225090000	153660000	71426000	0	0	0	0	0	0	60745000	35968000	24777000	164340000	117700000	46649000	56702	4621	53404	344155;344156;344157	464098;464099;464100	464100			3	
VSVSPVVHVR	0	Unmodified	1077.6295	0.62947783	3788	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	33.137	32.406	3	4.6105E-08	27079	160511_QHF_FH_JSI10i_3	97.565	85.852			0.91708	0.94333	12.18	4	0	Median	1.3457	1.0793	NaN	1	0	Median	0.8841	0.998	NaN	1	0	Median	0.95129	0.89165	NaN	1	0	Median	0.79438	0.81878	NaN	1	0	Median	511370000	267500000	243870000	125830000	51711000	74119000	130140000	65738000	64405000	119280000	71938000	47339000	136120000	78109000	58010000	56703	3788	53405	344158;344159;344160;344161	464101;464102;464103;464104;464105;464106	464102			5	
VSVSSHFVGFLMK	1	Unmodified	1436.7486	0.74860669	2541	Q14534	SQLE	Squalene monooxygenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	3	1	2	76.832	70.942	2;3	3.0859E-06	38486	160513_QHF_FH_JSI10Kac_6	110.46	92.195			0.82221	0.91231	20.297	6	0	Median	1.4825	1.278	NaN	1	0	Median	0.8076	0.92889	0.23254	2	0	Median	0.82032	0.80373	NaN	1	0	Median	0.73858	0.78853	18.306	2	0	Median	501830000	264060000	237780000	107820000	47361000	60458000	266140000	144400000	121740000	41813000	25145000	16668000	86065000	47151000	38914000	56704	2541	53406	344162;344163;344164;344165;344166;344167;344168	464107;464108;464109;464110;464111;464112;464113	464113			7	
VSVTTNTTDSVSDEEK	1	Unmodified	1710.7796	0.77956828	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	29.966	29.376	2	5.8573E-08	26306	160511_QHF_FH_JSI12i_1	133.71	116.69			1.3806	1.1987	32.448	5	4	Median	1.3806	1.1657	NaN	1	0	Median	0.66012	0.74853	NaN	1	1	Median	1.8645	1.7868	NaN	1	1	Median	1.2763	1.3272	14.401	2	2	Median	111400000	48416000	62980000	30324000	15041000	15283000	23514000	11768000	11746000	11265000	1842400	9422800	46293000	19765000	26528000	56705	4936	53407	344169;344170;344171;344172;344173	464114;464115;464116;464117;464118;464119	464116			6	
VSVYLQNWSHVLSYVSK	1	Unmodified	2008.0418	0.04181182	2349	Q13098	GPS1	COP9 signalosome complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			6						8	5	3	3	3	91.218	85.66	2;3	1.5097E-168	44062	160513_QHF_FH_JSI11Kac_6	330.63	281.97			1.127	1.0703	25.332	12	1	Median	1.2171	1.0371	15.746	3	0	Plateau	1.2886	1.532	34.221	3	1	Median	0.94062	0.89847	24.939	3	0	Median	1.1076	1.1566	12.066	3	0	Median	7216000000	3411300000	3804700000	1876100000	867970000	1008100000	2202900000	963030000	1239900000	1447200000	763990000	683250000	1689800000	816340000	873460000	56706	2349	53408	344174;344175;344176;344177;344178;344179;344180;344181;344182;344183;344184;344185;344186;344187	464120;464121;464122;464123;464124;464125;464126;464127;464128;464129;464130;464131;464132;464133;464134;464135;464136;464137;464138;464139;464140;464141;464142;464143;464144	464128			25	
VSWLGEEPVAGVWSEK	1	Unmodified	1771.8781	0.87810054	4350	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.445		8	3							2	2	3	4	88.396	87.924	2;3	3.6562E-10	76309	160511_QHF_FH_JSI12i_3	145.17	121.93			0.90905	0.96477	12.967	11	1	Median	1.1109	0.95706	12.634	2	0	Median	0.83587	1.0322	9.5563	2	0	Median	0.94898	0.95371	19.7	3	1	Median	0.88116	0.96137	11.14	4	0	Median	584330000	297510000	286820000	96464000	45612000	50852000	147830000	80968000	66860000	171790000	81480000	90315000	168240000	89450000	78789000	56707	4350	53409	344188;344189;344190;344191;344192;344193;344194;344195;344196;344197;344198	464145;464146;464147;464148;464149;464150;464151;464152;464153;464154;464155;464156;464157;464158;464159;464160;464161;464162;464163;464164;464165	464165			21	
VSWSPAEDHNAPIEK	1	Unmodified	1678.7951	0.79509919	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		6	4							1	2	4	3	40.84	40.27	2;3	1.2737E-09	34365	160511_QHF_FH_JSI12i_3	158.4	148.45			1.0527	1.0599	20.082	10	7	Median	1.0279	0.87242	NaN	1	1	Median	0.76636	0.93687	6.7031	2	2	Median	1.3258	1.2365	22.597	4	2	Median	0.97129	1.1769	10.491	3	2	Plateau	3248100000	1592200000	1655900000	319590000	166360000	153220000	462860000	239500000	223360000	1140000000	542530000	597450000	1325600000	643760000	681890000	56708	1388	53410	344199;344200;344201;344202;344203;344204;344205;344206;344207;344208	464166;464167;464168;464169;464170;464171;464172;464173;464174;464175;464176	464175			11	
VSWWGSTLAMLQR	0	Unmodified	1533.7762	0.77621842	752	O96006	ZBED1	Zinc finger BED domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	91.177	83.596	2	3.7298E-05	48225	160513_QHF_FH_JSI10Kac_6	94.465	69.611			1.2175	1.3911	2.1442	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1798	1.4124	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2564	1.3702	NaN	1	1	Median	171250000	70014000	101240000	0	0	0	154710000	63929000	90782000	0	0	0	16539000	6085000	10454000	56709	752	53411	344209;344210;344211	464177;464178;464179;464180	464180			4	
VSYALLFGDYLPQNIQAAR	0	Unmodified	2138.116	0.1160394	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	92.705	84.357	2;3	2.1986E-33	49292	160513_QHF_FH_JSI10Kac_6	200.13	172.72			1.2575	0.98266	19.38	4	0	Linear	1.1586	0.99786	NaN	1	0	Median	0.8761	1.0258	NaN	1	0	Median	1.4852	1.4008	NaN	1	0	Median	1.3649	1.4275	NaN	1	0	Median	245490000	124940000	120550000	73894000	41638000	32256000	69306000	37546000	31760000	52645000	21604000	31041000	49645000	24153000	25492000	56710	5258	53412	344212;344213;344214;344215;344216	464181;464182;464183;464184;464185	464185			5	
VSYARPSSEVIK	1	Unmodified	1334.7194	0.71941505	2700	Q15717	ELAVL1	ELAV-like protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.88	0.331		1	7							3	3	2		27.847	26.93	2;3	0.0020552	21776	160511_QHF_FH_JSI9i_3	74.162	45.075			0.88934	0.97524	25.117	7	0	Median	0.82309	0.7274	6.7513	3	0	Median	0.84618	0.9967	3.0773	2	0	Median	1.2829	1.1974	3.4218	2	0	Median	NaN	NaN	NaN	0	0	Median	1590500000	786330000	804140000	554690000	281680000	273010000	596990000	317170000	279820000	438780000	187470000	251310000	0	0	0	56711	2700	53413	344217;344218;344219;344220;344221;344222;344223;344224	464186;464187;464188;464189;464190;464191;464192;464193;464194;464195;464196	464193			11	
VSYFAVFDGHGGIR	0	Unmodified	1523.7521	0.75211216	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	3	2	2	2	72.444	68.154	2;3	5.7003E-05	61290	160511_QHF_FH_JSI11i_3	85.271	79.992			1.0839	0.9263	31.343	9	2	Linear	1.3945	1.1183	46.368	3	1	Plateau	0.91221	1.0533	4.3321	2	0	Median	1.2183	1.1573	20.274	2	1	Median	0.9467	0.97897	18.148	2	0	Median	976220000	472690000	503530000	227510000	98049000	129460000	265030000	138690000	126340000	243670000	105650000	138020000	240010000	130300000	109700000	56712	4627	53414	344225;344226;344227;344228;344229;344230;344231;344232;344233	464197;464198;464199;464200;464201;464202;464203;464204	464197			7	
VSYFPTVPGVYIVSTK	1	Unmodified	1755.9447	0.94472354	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.38	6	8	7					1	8	6	6	10	8	93.519	91.042	2;3	3.9022E-23	43701	160513_QHF_FH_JSI11Kac_6	147.26	113.38			1.0597	0.97611	22.698	23	8	Median	1.3411	1.1037	23.251	6	3	Median	0.78275	0.95244	28.74	5	2	Median	0.98062	1.0067	15.623	7	0	Median	0.86594	0.94959	28.884	5	3	Median	1238300000	598530000	639800000	367040000	156280000	210760000	339940000	170640000	169300000	326000000	164780000	161230000	205350000	106840000	98511000	56713	512	53415	344234;344235;344236;344237;344238;344239;344240;344241;344242;344243;344244;344245;344246;344247;344248;344249;344250;344251;344252;344253;344254;344255;344256;344257;344258;344259;344260;344261;344262;344263	464205;464206;464207;464208;464209;464210;464211;464212;464213;464214;464215;464216;464217;464218;464219;464220;464221;464222;464223;464224;464225;464226;464227;464228;464229;464230;464231;464232;464233;464234;464235;464236;464237;464238;464239;464240;464241	464213			37	
VSYGIGDEEHDQEGR	0	Unmodified	1689.7231	0.72305646	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	2.71	10	9	1				1			7	5	4	5	24.924	23.748	2;3	7.5947E-15	21040	160511_QHF_FH_JSI12i_1	167.44	160.91			0.95356	1.0301	11.573	18	3	Median	1.3535	1.0952	11.098	4	0	Median	0.80645	0.9735	13.612	5	2	Median	1.059	1.0461	6.5223	4	1	Median	0.92156	1.0049	9.3368	5	0	Median	2898300000	1440600000	1457700000	468250000	192520000	275740000	816420000	433980000	382430000	813420000	401370000	412040000	800190000	412740000	387450000	56714	1294	53416	344264;344265;344266;344267;344268;344269;344270;344271;344272;344273;344274;344275;344276;344277;344278;344279;344280;344281;344282;344283;344284	464242;464243;464244;464245;464246;464247;464248;464249;464250;464251;464252;464253;464254;464255;464256;464257;464258;464259;464260;464261;464262;464263;464264;464265;464266;464267;464268;464269;464270;464271;464272;464273;464274;464275;464276;464277	464251			36	
VSYIPDEQIAQGPENGRR	0	Unmodified	2028.0025	0.0024662011	5153	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.4	0.49		3	2							1	2	2		47.559	46.74	3	0.00011329	41193	160511_QHF_FH_JSI11i_3	58.83	41.95			1.1801	1.3167	14.224	5	0	Median	1.5442	1.3167	NaN	1	0	Median	1.0877	1.3048	9.769	2	0	Median	1.2103	1.1967	24.843	2	0	Median	NaN	NaN	NaN	0	0	Median	438330000	203600000	234730000	112150000	42392000	69759000	214450000	111170000	103290000	111720000	50036000	61688000	0	0	0	56715	5153	53417	344285;344286;344287;344288;344289	464278;464279;464280;464281;464282;464283;464284;464285	464278			7	
VSYLRPLDFEEAR	0	Unmodified	1593.8151	0.81510635	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.75	0.433		1	3							2	1	1		65.571	64.593	3	0.0033645	54067	160511_QHF_FH_JSI10i_3	50.897	41.097			0.99349	0.78741	17.195	4	1	Linear	1.2347	1.0293	16.863	2	1	Median	0.69898	0.80757	NaN	1	0	Median	0.87568	0.80305	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	233080000	122640000	110430000	94587000	46717000	47871000	68828000	40437000	28391000	69662000	35490000	34172000	0	0	0	56716	4047	53418	344290;344291;344292;344293	464286;464287;464288;464289	464287			4	
VSYLTIHYR	0	Unmodified	1150.6135	0.61349341	5137	Q9NYW8	RBAK	RB-associated KRAB zinc finger protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	52.37	43.032	3	0.0010546	23636	160513_QHF_FH_JSI10Kac_6	63.216	33.473			1.0193	1.0352	9.9472	4	0	Median	1.2283	0.99909	NaN	1	0	Median	0.90829	1.0727	NaN	1	0	Median	1.144	1.1157	NaN	1	0	Median	0.81158	0.88943	NaN	1	0	Median	75362000	37181000	38181000	15691000	7187800	8503600	34744000	17114000	17631000	14123000	7548000	6575200	10803000	5331400	5471500	56717	5137	53419	344294;344295;344296;344297	464290;464291;464292;464293;464294;464295;464296;464297	464297			8	
VSYLVFDEADR	0	Unmodified	1312.6299	0.62993134	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	65.643	64.343	2	0.0018132	56173	160511_QHF_FH_JSI11i_2	65.5	50.35			2.0254	2.173	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0254	2.173	NaN	1	0	Median	40288000	17252000	23036000	0	0	0	0	0	0	0	0	0	40288000	17252000	23036000	56718	3377	53420	344298;344299;344300	464298;464299;464300	464300			3	
VSYSHIQSK	1	Unmodified	1047.5349	0.53490874	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.35		4	8						3	5	3	4	3	11.701	9.835	2;3	2.704E-06	7988	160511_QHF_FH_JSI11i_3	100.48	80.173			1.0441	1.1376	36.91	15	3	Median	1.8922	1.5681	50.013	5	2	Median	0.93155	1.0935	15.33	3	0	Median	0.99732	0.95937	29.322	4	1	Median	1.1715	1.184	15.9	3	0	Plateau	3115400000	1366700000	1748800000	311420000	106310000	205110000	454900000	231080000	223820000	921350000	368790000	552560000	1427800000	660480000	767280000	56719	1298	53421	344301;344302;344303;344304;344305;344306;344307;344308;344309;344310;344311;344312;344313;344314;344315	464301;464302;464303;464304;464305;464306;464307;464308;464309;464310;464311;464312;464313;464314;464315;464316;464317;464318;464319;464320;464321	464302			21	
VSYVQLK	1	Unmodified	835.48035	0.48035398	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	2	2	2	32.833	32.11	2	0.027924	27128	160511_QHF_FH_JSI11i_2	53.351	26.389			0.98896	0.96169	14.793	8	0	Median	1.0975	0.90536	8.6004	2	0	Median	0.83002	0.99485	4.8598	2	0	Median	0.91662	0.90687	4.6903	2	0	Median	1.1606	1.2443	8.2711	2	0	Median	1266700000	646920000	619820000	222290000	98337000	123950000	380010000	206720000	173300000	430400000	212290000	218110000	234040000	129570000	104460000	56720	1085	53422	344316;344317;344318;344319;344320;344321;344322;344323	464322;464323;464324;464325;464326	464324			5	
VSYVSGSSLLTTHPQPMDQASLK	1	Unmodified	2445.221	0.22097475	5025	Q9NV88	INTS9	Integrator complex subunit 9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	67.951	67.302	3	3.44E-11	59726	160511_QHF_FH_JSI10i_2	101.94	82.217			0.93422	1.0257	18.391	6	0	Median	1.163	1.0268	NaN	1	0	Median	0.83274	1.0326	NaN	1	0	Median	0.85091	0.82957	29.866	2	0	Median	0.93422	1.05	10.727	2	0	Median	243060000	124860000	118200000	32970000	15348000	17621000	30622000	17538000	13084000	92719000	47594000	45125000	86754000	44384000	42370000	56721	5025	53423	344324;344325;344326;344327;344328;344329	464327;464328;464329;464330;464331;464332;464333;464334;464335;464336;464337;464338	464335			12	
VSYYENVIK	1	Unmodified	1113.5706	0.57062555	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	6.61	4						2	1		1	1	4	1	48.921	43.972	2	0.0013805	24932	160513_QHF_FH_JSI12Kac_4	85.731	42.484			0.86336	0.83068	10.993	7	3	Median	0.95564	0.78821	NaN	1	0	Median	0.86336	1.0464	NaN	1	0	Median	0.89959	0.87766	8.4767	4	3	Median	0.72882	0.79987	NaN	1	0	Median	1108900000	513330000	595560000	140330000	66245000	74086000	287600000	140820000	146780000	658340000	295320000	363020000	22622000	10943000	11679000	56722	1823	53424	344330;344331;344332;344333;344334;344335;344336	464339;464340;464341;464342;464343;464344;464345;464346;464347;464348	464346			10	
VTAAAMAGNK	1	Unmodified	932.47495	0.47495102	1016	P12270	TPR	Nucleoprotein TPR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	4.6	4.72		3	1				1			1	1	2	1	15.988	13.882	2	0.0016134	11117	160511_QHF_FH_JSI11i_2	78.149	48.576			1.2107	1.2138	30.429	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2882	1.5666	NaN	1	0	Median	0.94864	0.9455	31.444	2	0	Median	1.2593	1.2476	NaN	1	0	Median	229920000	101480000	128440000	0	0	0	62563000	31106000	31457000	134400000	55945000	78455000	32954000	14430000	18525000	56723	1016	53425	344337;344338;344339;344340;344341	464349;464350;464351;464352;464353	464351			5	
VTAAIASNIWAAYDR	0	Unmodified	1620.826	0.82600539	5527	Q9Y2Q5	LAMTOR2	Ragulator complex protein LAMTOR2	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		79.442	79.442	2	0.0052984	70969	160511_QHF_FH_JSI11i_3	53.448	37.31			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56724	5527	53426	344342	464354	464354			1	
VTAAMGK	1	Unmodified	676.3578	0.357796	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	9.3748	9.0515	2	0.016664	6490	160511_QHF_FH_JSI9i_1	62.714	25.069			0.7539	0.80842	21.736	10	0	Median	0.99564	0.82265	16.883	2	0	Median	0.71786	0.86649	2.001	2	0	Median	0.91387	0.90964	35.766	3	0	Plateau	0.64723	0.66563	16.421	3	0	Median	13715000000	6824700000	6890700000	2383100000	1070700000	1312400000	3602600000	1730600000	1872000000	4108400000	2109600000	1998800000	3621300000	1913800000	1707400000	56725	1953	53427	344343;344344;344345;344346;344347;344348;344349;344350;344351;344352	464355;464356;464357;464358;464359;464360;464361;464362;464363;464364;464365	464362			11	
VTAAMGKK	2	Unmodified	804.45276	0.45275902	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	6.0176	6.1132	2;3	0.014521	3692	160511_QHF_FH_JSI12i_3	42.599	26.265			0.66928	0.68832	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66928	0.68832	NaN	1	0	Median	641490000	226580000	414920000	0	0	0	0	0	0	0	0	0	641490000	226580000	414920000	56726	1953	53428	344353;344354	464366;464367	464367			2	
VTADVINAAEK	1	Unmodified	1129.5979	0.59790293	309	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.1	4.99	4	3	1				2			3	3	2	2	38.56	35.789	2	6.7718E-13	32299	160511_QHF_FH_JSI11i_1	143.89	101.78			1.1356	1.0737	33.001	10	4	Median	1.5894	1.3131	28.055	3	2	Median	0.8245	0.99582	48.338	3	1	Median	0.95009	0.92466	17.989	2	0	Median	0.99154	1.0673	28.432	2	1	Median	9785700000	5241200000	4544500000	1987100000	1009500000	977590000	2672700000	1468400000	1204300000	2601900000	1322500000	1279400000	2524000000	1440800000	1083200000	56727	309	53429	344355;344356;344357;344358;344359;344360;344361;344362;344363;344364	464368;464369;464370;464371;464372;464373;464374;464375;464376;464377;464378;464379;464380;464381;464382;464383;464384;464385;464386;464387	464370			20	
VTADVTSAVMGNPVTR	0	Unmodified	1616.8192	0.81920545	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	59.373	58.717	3	0.024562	53406	160511_QHF_FH_JSI12i_1	34.928	27.889			0.83597	0.82297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83597	0.82297	NaN	1	1	Median	11432000	7381900	4050000	0	0	0	0	0	0	0	0	0	11432000	7381900	4050000	56728	3102	53430	344365	464388	464388			1	
VTAEADSSSPTGILATSESK	1	Unmodified	1949.9429	0.94294522	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	49.886	49.208	2	7.4551E-33	44238	160511_QHF_FH_JSI10i_1	189.1	164.24			0.89266	0.90298	4.8697	4	0	Median	1.0139	0.82894	NaN	1	0	Median	0.76693	0.92671	NaN	1	0	Median	0.91888	0.9051	NaN	1	0	Median	0.8672	0.90087	NaN	1	0	Median	361640000	195160000	166480000	91096000	46933000	44163000	81302000	47397000	33906000	94394000	52199000	42194000	94847000	48631000	46216000	56729	8	53431	344366;344367;344368;344369;344370	464389;464390;464391;464392;464393;464394;464395;464396;464397;464398	464395			10	
VTAEVVLAHLGGGSTSR	0	Unmodified	1652.8846	0.8845829	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.74	6.14		5	11						7	7	5	6	5	64.513	61.36	2;3	1.208E-15	54302	160511_QHF_FH_JSI11i_3	180.78	128.85			1.0655	1.0531	19.499	23	14	Median	1.6079	1.3633	21.976	7	6	Median	0.95512	1.0924	22.503	5	1	Median	1.0693	1.0075	16.088	6	5	Median	1.0299	1.0751	14.135	5	2	Median	11064000000	5091700000	5972000000	1060000000	413800000	646170000	1333400000	638580000	694820000	4120100000	1968100000	2151900000	4550300000	2071200000	2479100000	56730	816	53432	344371;344372;344373;344374;344375;344376;344377;344378;344379;344380;344381;344382;344383;344384;344385;344386;344387;344388;344389;344390;344391;344392;344393	464399;464400;464401;464402;464403;464404;464405;464406;464407;464408;464409;464410;464411;464412;464413;464414;464415;464416;464417;464418;464419;464420;464421;464422;464423;464424;464425;464426	464402			28	
VTAFLDDLSQK	1	Unmodified	1235.6398	0.63976774	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3									2	2	3	63.571	62.738	2	9.6591E-05	53775	160511_QHF_FH_JSI12i_2	98.943	80.163			0.86963	0.93487	52.447	5	4	Median	NaN	NaN	NaN	0	0	Median	1.0791	1.2567	NaN	1	1	Median	0.43671	0.43367	NaN	1	1	Median	0.86963	0.93487	47.987	3	2	Median	243140000	130570000	112570000	0	0	0	48265000	27433000	20832000	50643000	31866000	18778000	144230000	71270000	72963000	56731	4551	53433	344394;344395;344396;344397;344398;344399;344400	464427;464428;464429;464430;464431;464432;464433;464434	464428			8	
VTAGNDEVEAAAQAAGIHDAIMAFPEGYR	0	Unmodified	2973.3927	0.39268454	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		93.714	93.319	3	5.444E-06	81801	160511_QHF_FH_JSI11i_2	44.811	38.651			1.0888	1.1028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0888	1.1028	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	19798000	11081000	8717100	0	0	0	0	0	0	19798000	11081000	8717100	0	0	0	56732	4880	53434	344401	464435	464435			1	
VTAHWEK	1	Unmodified	869.43955	0.43955179	5276	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	11.81	11.899	3	0.0078333	9100	160511_QHF_FH_JSI12i_3	50.607	23.278			1.6911	1.7332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6911	1.7332	NaN	1	1	Median	99999000	34004000	65995000	0	0	0	0	0	0	0	0	0	99999000	34004000	65995000	56733	5276	53435	344402	464436	464436			1	
VTAIDFR	0	Unmodified	820.4443	0.44430282	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	39.151	38.329	2	0.031087	32640	160511_QHF_FH_JSI12i_2	51.787	7.0951			0.75397	0.77148	6.1541	5	0	Median	0.89269	0.75793	NaN	1	0	Median	0.62426	0.77148	NaN	1	0	Median	0.77929	0.77858	9.8421	2	0	Median	0.75397	0.83495	NaN	1	0	Median	888700000	505360000	383330000	160060000	90131000	69934000	184110000	111070000	73038000	341190000	186260000	154920000	203340000	117900000	85438000	56734	5345	53436	344403;344404;344405;344406;344407	464437;464438;464439	464437			3	
VTAIEPIINHGGASASTQHLHPSLR	0	Unmodified	2605.3725	0.37248187	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			54.442	52.885	5	7.0884E-05	44234	160511_QHF_FH_JSI10i_3	49.638	42.277			0.62334	0.70789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.62334	0.70789	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23401000	17313000	6088500	0	0	0	23401000	17313000	6088500	0	0	0	0	0	0	56735	3819	53437	344408	464440	464440			1	
VTAIHIDPATHR	0	Unmodified	1329.7153	0.71533272	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.95	6.29		10	15						12	9	10	12	6	29.096	25.422	2;3;4	1.3167E-16	20539	160511_QHF_FH_JSI12i_3	167.67	130.48			0.9647	1.1046	28.319	31	5	Median	1.5663	1.327	17.645	9	3	Median	0.95265	1.1046	7.1497	9	1	Median	0.96275	0.92413	25.084	7	1	Median	0.75868	0.78259	14.61	6	0	Median	13299000000	6831700000	6467300000	1912100000	704920000	1207200000	2564500000	1294700000	1269900000	3986600000	1931900000	2054700000	4835700000	2900200000	1935500000	56736	1650	53438	344409;344410;344411;344412;344413;344414;344415;344416;344417;344418;344419;344420;344421;344422;344423;344424;344425;344426;344427;344428;344429;344430;344431;344432;344433;344434;344435;344436;344437;344438;344439;344440;344441;344442;344443;344444;344445	464441;464442;464443;464444;464445;464446;464447;464448;464449;464450;464451;464452;464453;464454;464455;464456;464457;464458;464459;464460;464461;464462;464463;464464;464465;464466;464467;464468;464469;464470;464471;464472;464473;464474;464475;464476;464477;464478;464479;464480;464481;464482;464483;464484;464485;464486;464487;464488;464489;464490;464491;464492;464493;464494;464495	464483			55	
VTALCWHPTK	1	Unmodified	1211.6121	0.61211321	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	38.393	37.607	3	1.6672E-05	31844	160511_QHF_FH_JSI12i_3	77.64	69.536			0.91699	0.87337	33.527	4	0	Median	1.0688	0.86862	NaN	1	0	Median	0.76316	0.87814	NaN	1	0	Median	0.78671	0.73349	NaN	1	0	Median	1.5623	1.5784	NaN	1	0	Median	349260000	175710000	173550000	47598000	23491000	24107000	51425000	29005000	22420000	85580000	48631000	36949000	164660000	74582000	90073000	56737	3736	53439	344446;344447;344448;344449	464496;464497;464498;464499;464500;464501	464501			6	
VTANNDKNR	1	Acetyl (K)	1072.5261	0.52613497	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		6.7041	-0.62573	2	0.0081735	2488	160513_QHF_FH_JSI11Kac_3	65.305	35.832			0.78125	0.84713	115.87	2	0	Median	NaN	NaN	NaN	0	0	Median	1.6196	1.9222	NaN	1	0	Median	0.37686	0.37334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39110000	25192000	13918000	0	0	0	13454000	5750200	7703500	25656000	19441000	6214800	0	0	0	56738	1192	53440	344450;344451	464502;464503	464502	1061		2	
VTAPDVDLHLK	1	Unmodified	1206.6608	0.66083754	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.1	3.99	2	7						1		2	2	4	2	53.972	52.116	2;3	4.5173E-05	45652	160511_QHF_FH_JSI9i_2	81.525	62.779			0.9421	0.99766	15.552	10	1	Median	0.99461	0.8636	14.904	2	0	Median	0.9409	1.1154	0.29984	2	0	Median	1.0531	1.0545	10.301	4	0	Median	0.74538	0.85176	21.95	2	1	Median	1445000000	744720000	700260000	218290000	93736000	124550000	352790000	186930000	165870000	486370000	255450000	230920000	387530000	208600000	178930000	56739	2286	53441	344452;344453;344454;344455;344456;344457;344458;344459;344460;344461	464504;464505;464506;464507;464508;464509;464510;464511;464512;464513;464514;464515;464516	464510			11	
VTAPPEAEYSGLVR	0	Unmodified	1487.762	0.76200815	911	P08648	ITGA5	Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		54.672	54.26	2	0.040638	49172	160511_QHF_FH_JSI11i_1	46.592	26.805			1.547	1.4799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.547	1.4799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25557000	13440000	12117000	0	0	0	0	0	0	25557000	13440000	12117000	0	0	0	56740	911	53442	344462	464517	464517			1	
VTAPQPAATNGDLASR	0	Unmodified	1567.7954	0.79543354	2142	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	33.69	33.085	2	0.00028267	29603	160511_QHF_FH_JSI11i_1	85.554	70.288			0.79829	0.83858	18.14	4	4	Median	1.0724	0.86501	NaN	1	1	Median	0.70059	0.81295	NaN	1	1	Median	0.9096	0.87269	NaN	1	1	Median	0.58673	0.59451	NaN	1	1	Median	105440000	62464000	42979000	20376000	7965900	12410000	35871000	23229000	12642000	31108000	20289000	10819000	18088000	10980000	7107200	56741	2142	53443	344463;344464;344465;344466;344467;344468	464518;464519;464520;464521;464522;464523	464518			6	
VTAQDVR	0	Unmodified	787.41882	0.41881635	1270	P26038	MSN	Moesin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			9.8107	9.5751	2	0.041038	7369	160511_QHF_FH_JSI10i_1	49.325	12.35			0.69599	0.81154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69599	0.81154	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	365140000	197670000	167470000	0	0	0	365140000	197670000	167470000	0	0	0	0	0	0	56742	1270	53444	344469	464524	464524			1	
VTAQDVRK	1	Unmodified	915.51378	0.51377937	1270	P26038	MSN	Moesin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.12	0.781	2	3	3							1	2	3	2	8.3869	8.2237	2;3	0.0013499	5697	160511_QHF_FH_JSI12i_3	58.433	21.28			0.89771	0.96655	19.309	8	0	Median	1.1267	0.97566	NaN	1	0	Median	0.78112	0.93152	6.1674	2	0	Median	0.89273	0.86501	29.05	3	0	Plateau	0.89488	0.91217	7.2413	2	0	Median	1586700000	820380000	766340000	185460000	67552000	117910000	134630000	77633000	56994000	590280000	280310000	309970000	676340000	394890000	281460000	56743	1270	53445	344470;344471;344472;344473;344474;344475;344476;344477	464525;464526;464527;464528;464529	464528			5	
VTAQGPGLEPSGNIANK	1	Unmodified	1651.8529	0.85294842	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	5.48	9	4	6		2	6	3			6	8	6	10	43.7	39.149	2;3	3.8236E-66	35443	160511_QHF_FH_JSI11i_1	237.32	208.36			0.974	0.98483	29.491	26	6	Median	1.2036	0.95291	20.436	5	3	Median	0.9122	1.0864	33.14	8	2	Median	0.98153	0.95776	7.3727	6	0	Median	0.97268	1.0431	42.308	7	1	Median	7692700000	3864300000	3828400000	1708600000	863560000	845010000	2071200000	995810000	1075400000	2197900000	1056000000	1142000000	1715000000	948940000	766030000	56744	1192	53446	344478;344479;344480;344481;344482;344483;344484;344485;344486;344487;344488;344489;344490;344491;344492;344493;344494;344495;344496;344497;344498;344499;344500;344501;344502;344503;344504;344505;344506;344507	464530;464531;464532;464533;464534;464535;464536;464537;464538;464539;464540;464541;464542;464543;464544;464545;464546;464547;464548;464549;464550;464551;464552;464553;464554;464555;464556;464557;464558;464559;464560;464561;464562;464563;464564;464565;464566;464567;464568;464569;464570;464571;464572;464573;464574;464575;464576;464577;464578;464579;464580;464581;464582;464583;464584	464533			55	
VTAQSIIPGILER	0	Unmodified	1395.8086	0.80856441	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	82.967	82.871	2	0.00024508	73911	160511_QHF_FH_JSI11i_3	77.597	67.073			0.83806	0.82426	1.5271	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90024	0.83321	NaN	1	0	Median	0.78018	0.81541	NaN	1	0	Median	127950000	62387000	65564000	0	0	0	0	0	0	89945000	46578000	43367000	38005000	15809000	22196000	56745	485	53447	344508;344509	464585;464586	464585			2	
VTASGFPVILSAPWYLDLISYGQDWR	0	Unmodified	2953.5014	0.50143035	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			100.78	95.062	3	1.1328E-06	56041	160513_QHF_FH_JSI10Kac_6	96.793	84.116			0.98504	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98504	1.1675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100040000	67543000	32496000	0	0	0	100040000	67543000	32496000	0	0	0	0	0	0	56746	874	53448	344510	464587;464588	464587			2	
VTASGFPVILSAPWYLDLISYGQDWRK	1	Unmodified	3081.5964	0.59639337	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	98.961	90.867	3;4	4.787E-99	54469	160513_QHF_FH_JSI10Kac_6	219.55	195.28			1.1991	1.1639	20.504	6	2	Median	1.4985	1.2612	0.027877	2	2	Median	0.74988	0.88753	21.641	2	0	Median	1.1471	1.0743	NaN	1	0	Median	1.2536	1.3202	NaN	1	0	Median	1758500000	895530000	863010000	424610000	197910000	226700000	891340000	497580000	393760000	197930000	94597000	103340000	244660000	105440000	139220000	56747	874	53449	344511;344512;344513;344514;344515;344516	464589;464590;464591;464592;464593;464594;464595	464593			6	
VTASSGITIPKPPKPPDK	3	Unmodified	1832.0407	0.040749188	3936	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			49.335	47.767	4	0.0011156	39935	160511_QHF_FH_JSI10i_3	57.482	51.215			0.64158	0.74457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64158	0.74457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42796000	23293000	19504000	0	0	0	42796000	23293000	19504000	0	0	0	0	0	0	56748	3936	53450	344517	464596	464596			1	
VTAVALTDSVHNVWHQEAGK	1	Unmodified	2161.0916	0.091615559	3761	Q8WUF8	FAM172A	Protein FAM172A	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	63.658	63.372	3	5.034E-15	54655	160511_QHF_FH_JSI12i_3	145.75	128.16			1.0293	1.0336	22.507	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0293	1.0336	22.507	2	2	Median	67180000	33934000	33247000	0	0	0	0	0	0	0	0	0	67180000	33934000	33247000	56749	3761	53451	344518;344519	464597;464598	464598			2	
VTAVHKANIMK	2	Acetyl (K)	1252.6962	0.69617719	386;1738	O43837;P51553	IDH3B;IDH3G	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	no	no	1	0	0	1			By MS/MS		16	0									1			1		39.02	29.506	3	0.00093317	16317	160513_QHF_FH_JSI11Kac_6	63.727	50.719			0.23611	0.22981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23611	0.22981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11814000	9586500	2227300	0	0	0	0	0	0	11814000	9586500	2227300	0	0	0	56750	386;1738	53452	344520	464599	464599	201		1	
VTAVIPCFPYAR	0	Unmodified	1392.7224	0.72239194	1920;1008	P60891;P21108;P11908	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.78	5.77	3	3	1					1	1		2	5	2	77.101	74.487	2	6.8386E-05	67546	160511_QHF_FH_JSI10i_2	95.608	75.846			0.97046	1.0357	21.141	9	4	Median	NaN	NaN	NaN	0	0	Median	0.94105	1.1206	9.2249	2	0	Median	0.86116	0.85346	13.192	5	3	Median	1.1924	1.2838	15.202	2	1	Median	818810000	417430000	401380000	0	0	0	173350000	90905000	82446000	431770000	222310000	209460000	213680000	104210000	109470000	56751	1920;1008	53453	344521;344522;344523;344524;344525;344526;344527;344528;344529	464600;464601;464602;464603;464604;464605;464606;464607;464608;464609;464610	464610			11	
VTAVPTLLK	1	Unmodified	940.59572	0.59571809	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72	4	4	3				1	3		3	4	5	3	57.665	54.133	2	0.00092686	46339	160511_QHF_FH_JSI12i_2	71.501	37.986			0.91084	0.99072	18.043	15	0	Median	1.1803	0.9747	11.844	3	0	Median	0.79485	0.95753	11.351	4	0	Median	1.0139	1.0337	25.242	5	0	Median	0.89044	0.99983	24.545	3	0	Median	5462800000	2718600000	2744300000	1027700000	449920000	577800000	1290400000	725660000	564760000	2018400000	1030000000	988480000	1126300000	513030000	613220000	56752	4367	53454	344530;344531;344532;344533;344534;344535;344536;344537;344538;344539;344540;344541;344542;344543;344544	464611;464612;464613;464614;464615;464616;464617;464618;464619;464620;464621;464622;464623;464624;464625;464626;464627;464628;464629;464630;464631;464632;464633	464614			23	
VTAVPTLLKYGTPQK	2	Acetyl (K)	1656.9451	0.94505789	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							2	2				4		79.842	69.203	2;3	0.00024219	36791	160513_QHF_FH_JSI11Kac_4	77.776	56.919			0.29717	0.29314	11.823	4	0	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29717	0.29314	11.823	4	0	Linear	NaN	NaN	NaN	0	0	Median	48190000	36049000	12140000	0	0	0	0	0	0	48190000	36049000	12140000	0	0	0	56753	4367	53455	344545;344546;344547;344548	464634;464635;464636;464637;464638;464639;464640	464635	3146		7	
VTAYKAVQEK	2	Acetyl (K)	1177.6343	0.63428844	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.5	0.5						3	3				2	2	2	35.569	26.528	2	0.0011421	15499	160513_QHF_FH_JSI12Kac_3	86.879	62.003			0.96523	1.0451	11.785	6	0	Median	NaN	NaN	NaN	0	0	Median	0.78623	0.93585	4.3798	2	0	Median	1.2013	1.1725	10.514	2	0	Median	0.96523	1.0577	7.4406	2	0	Median	85254000	42596000	42658000	0	0	0	31700000	16489000	15211000	18478000	8842500	9635800	35075000	17265000	17810000	56754	5542	53456	344549;344550;344551;344552;344553;344554	464641;464642;464643;464644;464645;464646	464643	3482		6	
VTAYTVDVTGR	0	Unmodified	1180.6088	0.60880197	2286	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	5.88		2					3			1	1	1	2	44.864	38.169	2	0.0027303	21878	160513_QHF_FH_JSI12Kac_4	68.893	38.206			0.92453	1.0238	12.28	5	2	Median	1.4389	1.2454	NaN	1	1	Median	0.77615	0.9155	NaN	1	0	Median	1.1554	1.1306	NaN	1	0	Median	0.91355	0.99645	3.825	2	1	Median	104180000	49160000	55024000	42858000	15825000	27033000	6965600	4305800	2659800	12031000	6308400	5722700	42329000	22721000	19608000	56755	2286	53457	344555;344556;344557;344558;344559	464647;464648;464649;464650	464650			4	
VTDAIVLLDR	0	Unmodified	1113.6394	0.63937381	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		14.5	0.5							1	1			1	1		73.892	63.23	2	0.0040961	33808	160513_QHF_FH_JSI10Kac_4	65.305	40.382			0.81538	0.87767	10.159	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69457	0.81683	NaN	1	0	Median	0.95721	0.94304	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42425000	22607000	19818000	0	0	0	9743200	5384500	4358700	32682000	17223000	15459000	0	0	0	56756	989	53458	344560;344561	464651	464651			1	
VTDAIVLLDREQGGK	1	Unmodified	1612.8784	0.87843489	989	P11172	UMPS	Uridine 5'-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5'-phosphate decarboxylase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	54.775	54.292	2;3	0.00026223	46488	160511_QHF_FH_JSI12i_3	69.379	64.324			1.0022	1.0219	18.863	7	1	Median	1.6819	1.419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1571	1.0722	13.197	3	1	Median	0.88179	0.91526	11.517	3	0	Median	1262100000	657330000	604770000	93874000	39997000	53877000	0	0	0	575080000	268980000	306100000	593150000	348360000	244790000	56757	989	53459	344562;344563;344564;344565;344566;344567;344568	464652;464653;464654;464655;464656	464654			5	
VTDALNATR	0	Unmodified	959.50361	0.50360861	980	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	6.01	4	4				2	2	1		2	3	3	5	19.527	15.741	2	0.00034516	13641	160511_QHF_FH_JSI11i_1	82.452	51.223			0.99253	0.97118	24.724	12	0	Median	1.1515	0.96186	13.419	2	0	Median	0.67606	0.82955	2.4564	3	0	Plateau	0.99253	0.97118	6.2847	2	0	Median	1.0446	1.1255	30.232	5	0	Median	11544000000	5389800000	6154200000	2758800000	1287200000	1471700000	3413400000	1808200000	1605300000	2668300000	1104800000	1563500000	2703500000	1189700000	1513800000	56758	980	53460	344569;344570;344571;344572;344573;344574;344575;344576;344577;344578;344579;344580;344581	464657;464658;464659;464660;464661;464662;464663;464664;464665	464657			9	
VTDAPTYTTRDELVAK	1	Unmodified	1778.905	0.90504357	5113	Q9NXV6	CDKN2AIP	CDKN2A-interacting protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	1	3	38.003	37.313	3	0.00090861	31707	160511_QHF_FH_JSI12i_3	63.682	37.535			1.2264	1.301	25.275	6	3	Median	1.5955	1.3579	NaN	1	0	Median	0.92233	1.1371	NaN	1	0	Median	1.1363	1.1406	NaN	1	1	Median	1.2328	1.3998	31.049	3	2	Median	432970000	206240000	226730000	81708000	41934000	39774000	71727000	33181000	38546000	86277000	46244000	40032000	193260000	84885000	108370000	56759	5113	53461	344582;344583;344584;344585;344586;344587	464666;464667;464668;464669;464670;464671	464670			6	
VTDDLVCLVYK	1	Unmodified	1323.6744	0.67443869	1661	P49458	SRP9	Signal recognition particle 9 kDa protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	75.07	74.579	2	2.2891E-06	67861	160511_QHF_FH_JSI12i_1	118.18	91.063			0.95843	0.94775	9.4375	4	2	Median	1.0787	0.89735	NaN	1	0	Median	0.83439	1.001	NaN	1	1	Median	0.87218	0.86894	NaN	1	0	Median	1.0532	1.0642	NaN	1	1	Median	483950000	257470000	226490000	44729000	21513000	23216000	127610000	68086000	59524000	130870000	83364000	47502000	180750000	84505000	96243000	56760	1661	53462	344588;344589;344590;344591	464672;464673;464674;464675	464673			4	
VTDEILHLVPNIDNFR	0	Unmodified	1893.9949	0.99486163	1724	P51003;Q9NRJ5	PAPOLA;PAPOLB	Poly(A) polymerase alpha;Poly(A) polymerase beta	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	96.27	95.934	3	4.922E-05	82520	160511_QHF_FH_JSI12i_2	76.85	51.531			0.79138	0.83419	33.571	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64631	0.65792	NaN	1	0	Median	0.96901	1.0577	NaN	1	0	Median	38347000	22304000	16044000	0	0	0	0	0	0	20298000	12912000	7385500	18049000	9391000	8658000	56761	1724	53463	344592;344593;344594	464676;464677;464678;464679	464677			4	
VTDESIPSYSGSDMPR	0	Unmodified	1739.7672	0.76722946	4335	Q99996	AKAP9	A-kinase anchor protein 9	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	48.849	48.305	2	0.012868	43511	160511_QHF_FH_JSI10i_1	51.841	40.308			0.76065	0.79368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.76065	0.79368	NaN	1	1	Median	42472000	34795000	7676800	0	0	0	18656000	18656000	0	0	0	0	23816000	16139000	7676800	56762	4335	53464	344595;344596	464680;464681	464681			2	
VTDFGDKVEDPTFLNQLQSGVNR	1	Unmodified	2578.2663	0.26634504	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By matching	2	0.816	2	2	2							1	2	2	1	81.165	80.816	3	1.8661E-09	72285	160511_QHF_FH_JSI11i_3	94.671	86.959			0.9719	0.94724	3.9928	6	1	Median	1.1032	0.94163	NaN	1	0	Median	0.79347	0.9434	1.4137	2	1	Median	0.9719	0.94898	1.18	2	0	Median	1.027	1.0399	NaN	1	0	Median	531990000	265650000	266340000	87664000	32866000	54798000	126620000	66751000	59865000	198040000	100800000	97242000	119670000	65237000	54435000	56763	2517	53465	344597;344598;344599;344600;344601;344602	464682;464683;464684;464685	464682			4	
VTDHATTALLHYQLPQMPDVVVR	0	Unmodified	2603.353	0.35299198	3099	Q6P2C8	MED27	Mediator of RNA polymerase II transcription subunit 27	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		86.081	86.081	4	0.0046988	76826	160511_QHF_FH_JSI11i_3	30.585	22.592			1.2709	1.1927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2709	1.1927	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37856000	14689000	23167000	0	0	0	0	0	0	37856000	14689000	23167000	0	0	0	56764	3099	53466	344603	464686	464686			1	
VTDLLGGLFSK	1	Unmodified	1148.6441	0.64412484	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	90.365	89.794	2	4.0447E-07	77687	160511_QHF_FH_JSI12i_2	117.67	83.584			1.083	1.0745	8.3078	6	0	Median	1.1955	1.0199	13.331	2	0	Median	0.79815	0.99296	NaN	1	0	Median	1.0902	1.107	NaN	1	0	Median	1.0028	1.0979	7.2676	2	0	Median	473920000	259320000	214600000	123090000	66903000	56190000	109450000	74434000	35014000	124820000	58981000	65840000	116560000	59007000	57554000	56765	346	53467	344604;344605;344606;344607;344608;344609	464687;464688;464689;464690;464691;464692;464693;464694;464695;464696;464697;464698	464690			12	
VTDPVGDIVSFMHSFEEK	1	Unmodified	2035.9561	0.95609286	4013	Q96CS3	FAF2	FAS-associated factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	102.02	101.91	3	1.5432E-18	89672	160511_QHF_FH_JSI11i_2	169.25	153.13			0.97968	1.0785	11.581	4	0	Linear	0.99277	0.84311	NaN	1	0	Median	0.76434	0.93433	NaN	1	0	Median	1.0446	1.0551	NaN	1	0	Median	0.96677	1.0832	NaN	1	0	Median	907570000	474640000	432930000	159730000	87614000	72117000	224610000	128120000	96491000	249660000	122530000	127130000	273570000	136370000	137200000	56766	4013	53468	344610;344611;344612;344613	464699;464700;464701;464702;464703;464704	464702			6	
VTDRNITLSLVANPSHLEAADPVVMGK	1	Unmodified	2846.496	0.4960274	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			83.378	82.132	4	0.028131	68950	160511_QHF_FH_JSI10i_3	23.394	13.935			1.2644	1.4761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2644	1.4761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17995000	7288200	10707000	0	0	0	17995000	7288200	10707000	0	0	0	0	0	0	56767	2185	53469	344614	464705	464705			1	
VTDYAEEK	1	Unmodified	953.43419	0.43419164	5093	Q9NX55	HYPK	Huntingtin-interacting protein K	yes	yes	0	0	0	0			By MS/MS	By MS/MS	7	6	2					2						2	2	13.61	9.8828	2	0.026246	6845	160513_QHF_FH_JSI11Kac_3	61.962	45.036			1.1917	1.2162	14.216	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4269	1.391	5.7304	2	1	Median	1.0404	1.0953	1.5543	2	0	Median	880150000	453220000	426930000	0	0	0	0	0	0	402690000	184740000	217960000	477450000	268490000	208970000	56768	5093	53470	344615;344616;344617;344618	464706;464707;464708	464707			3	
VTEAEIVPMGK	1	Unmodified	1172.6111	0.61111015	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.38	47.699	2	2.5842E-05	42352	160511_QHF_FH_JSI9i_1	100.02	70.93			0.80101	0.82001	7.3694	4	1	Median	1.1087	0.90608	NaN	1	0	Median	0.64117	0.75729	NaN	1	0	Median	0.84289	0.82584	NaN	1	1	Median	0.76121	0.81423	NaN	1	0	Median	1588500000	839100000	749390000	310200000	138670000	171540000	402980000	229050000	173930000	461370000	264060000	197310000	413940000	207320000	206620000	56769	512	53471	344619;344620;344621;344622	464709;464710;464711;464712;464713;464714;464715	464715			7	
VTEASSNSFVAIK	1	Unmodified	1351.6983	0.69834526	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	44.004	43.34	2	3.5612E-05	38888	160511_QHF_FH_JSI10i_1	116.55	95.083			0.84533	0.79234	9.8706	4	0	Median	0.9583	0.80952	NaN	1	0	Median	0.6602	0.76323	NaN	1	0	Median	0.79058	0.77552	NaN	1	0	Median	0.90387	0.94725	NaN	1	0	Median	375260000	208380000	166870000	66160000	33835000	32325000	98878000	65531000	33347000	100530000	52881000	47654000	109690000	56138000	53548000	56770	3848	53472	344623;344624;344625;344626;344627	464716;464717;464718;464719;464720;464721;464722	464720			7	
VTEDEEPPTEQDK	1	Unmodified	1515.6577	0.65766223	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.408	16.926	2	5.3081E-22	14035	160511_QHF_FH_JSI9i_1	172.34	156.45			1.1776	1.1202	11.633	4	0	Median	1.3438	1.1099	NaN	1	0	Median	1.1547	1.3838	NaN	1	0	Median	1.2011	1.1307	NaN	1	0	Median	1.0165	1.0669	NaN	1	0	Median	302820000	143210000	159610000	93968000	40833000	53135000	67433000	29747000	37686000	63290000	32031000	31259000	78127000	40599000	37528000	56771	5323	53473	344628;344629;344630;344631	464723;464724;464725;464726;464727;464728;464729;464730	464729			8	
VTEELAAATAQVSHLQLK	1	Unmodified	1908.0316	0.031641064	2938	Q5T1M5	FKBP15	FK506-binding protein 15	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.159	70.274	3	0.00091825	60595	160511_QHF_FH_JSI12i_2	48.968	42.806			1.1711	1.2053	19.127	4	0	Median	1.4846	1.2807	NaN	1	0	Median	0.73	0.87774	NaN	1	0	Median	1.0938	1.1342	NaN	1	0	Median	1.2537	1.3473	NaN	1	0	Median	270890000	117710000	153180000	58873000	20628000	38245000	74991000	35763000	39228000	92003000	40038000	51965000	45024000	21278000	23746000	56772	2938	53474	344632;344633;344634;344635	464731;464732;464733	464731			3	
VTEELLTDNR	0	Unmodified	1188.5986	0.59863121	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			34.913	34.568	2	0.044573	30916	160511_QHF_FH_JSI10i_1	44.318	28.656			0.78422	0.92609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.78422	0.92609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52714000	27081000	25633000	0	0	0	52714000	27081000	25633000	0	0	0	0	0	0	56773	5295	53475	344636	464734	464734			1	
VTEETVYTCTGHPLK	1	Unmodified	1733.8294	0.82943578	1505	P40937	RFC5	Replication factor C subunit 5	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	2	0		3									1	1	1	35.447	34.539	3	3.5646E-05	29268	160511_QHF_FH_JSI12i_2	94.532	94.124			1.0536	1.0544	16.008	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.93147	1.1538	NaN	1	0	Median	1.0536	1.0544	NaN	1	0	Median	1.2632	1.4392	NaN	1	0	Median	252250000	118430000	133820000	0	0	0	78638000	36565000	42073000	105880000	56284000	49599000	67727000	25578000	42149000	56774	1505	53476	344637;344638;344639	464735;464736	464735			2	
VTEGGEPYR	0	Unmodified	1006.472	0.47197413	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	1	2	2	12.146	11.707	2	0.0080406	9591	160511_QHF_FH_JSI12i_1	52.716	13.924			0.97425	1.0426	7.7565	6	0	Median	1.284	1.1114	NaN	1	0	Median	0.85908	1.071	NaN	1	0	Median	0.97836	0.97145	6.1803	2	0	Median	0.94935	1.0418	10.916	2	0	Median	3382900000	1785300000	1597700000	122430000	59949000	62478000	173510000	99303000	74204000	1491500000	767530000	723950000	1595500000	858520000	737020000	56775	2569	53477	344640;344641;344642;344643;344644;344645	464737;464738;464739;464740;464741;464742;464743;464744;464745	464740			9	
VTEGLTDVILYHQPDDK	1	Unmodified	1941.9684	0.96837211	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.595	4	7	1							3	3	3	3	67.763	66.918	2;3	1.0644E-09	58401	160511_QHF_FH_JSI11i_2	141	130.9			1.0183	1.0901	26.576	11	1	Median	0.97069	0.81307	23.634	3	1	Median	1.1994	1.4355	33.705	2	0	Median	1.256	1.1698	7.6717	3	0	Plateau	0.80387	0.87445	9.4774	3	0	Median	3017200000	1529400000	1487800000	445630000	216740000	228890000	784200000	396400000	387800000	992640000	505620000	487020000	794760000	410670000	384090000	56776	423	53478	344646;344647;344648;344649;344650;344651;344652;344653;344654;344655;344656;344657	464746;464747;464748;464749;464750;464751;464752;464753;464754;464755;464756;464757;464758;464759;464760;464761;464762;464763;464764;464765	464760			20	
VTEGLTDVILYHQPDDKK	2	Unmodified	2070.0633	0.063335123	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	59.476	59.207	4	0.0034811	51064	160511_QHF_FH_JSI12i_3	47.397	38.903			1.2637	1.2717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2637	1.2717	NaN	1	1	Median	56382000	29266000	27116000	0	0	0	0	0	0	0	0	0	56382000	29266000	27116000	56777	423	53479	344658	464766	464766			1	
VTEGLVDVILYHQPDDK	1	Unmodified	1939.9891	0.98910755	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	81.701	81.272	3	6.9671E-06	71660	160511_QHF_FH_JSI9i_2	90.714	79.86			1.0255	1.0104	1.7662	5	0	Median	1.1976	1.0104	NaN	1	0	Median	0.78686	0.98581	NaN	1	0	Median	1.0273	1.0111	1.67	2	0	Median	1.0255	1.0299	NaN	1	0	Median	532040000	260710000	271330000	93864000	37598000	56266000	107070000	60364000	46707000	243910000	119250000	124670000	87189000	43500000	43689000	56778	326	53480	344659;344660;344661;344662;344663	464767;464768;464769;464770;464771;464772;464773;464774;464775;464776	464770			10	
VTEGLVDVILYHQPDDKK	2	Unmodified	2068.0841	0.084070566	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	72.51	72.363	4	1.1262E-05	62882	160511_QHF_FH_JSI12i_3	82.482	77.029			1.1575	1.1194	55.793	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7511	1.6608	NaN	1	1	Median	0.76514	0.75449	NaN	1	0	Median	44670000	25477000	19193000	0	0	0	0	0	0	17581000	9214000	8366600	27089000	16263000	10826000	56779	326	53481	344664;344665	464777;464778;464779	464779			3	
VTEGQQER	0	Unmodified	945.45157	0.45157304	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	4.8684	1.572	2	0.004134	2427	160511_QHF_FH_JSI10i_1	69.628	43.519			0.90835	0.97366	4.4904	7	0	Median	1.2691	1.0468	NaN	1	0	Median	0.78754	0.94057	3.3674	2	0	Median	1.02	1.0034	4.252	2	0	Median	0.90734	0.98067	2.1631	2	0	Median	7170200000	3870700000	3299600000	751270000	329080000	422190000	2142300000	1221200000	921130000	2146900000	1091300000	1055600000	2129800000	1229100000	900680000	56780	2380	53482	344666;344667;344668;344669;344670;344671;344672	464780;464781;464782;464783;464784;464785;464786	464782			7	
VTEGSFVYK	1	Unmodified	1028.5179	0.51786169	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.2	3	4	4				3	3	1	4	5	4	5	38.389	33.787	2	0.00040657	30715	160511_QHF_FH_JSI12i_1	81.296	34.87			0.87436	0.87517	24.368	17	3	Median	0.87983	0.7276	16.26	4	1	Median	0.79333	0.95882	43.222	4	2	Median	0.89918	0.90677	12.44	4	0	Median	0.86556	0.97727	17.951	5	0	Median	5635400000	2734300000	2901100000	1640200000	793010000	847190000	986370000	508290000	478080000	1371800000	611540000	760270000	1637000000	821440000	815580000	56781	1702	53483	344673;344674;344675;344676;344677;344678;344679;344680;344681;344682;344683;344684;344685;344686;344687;344688;344689;344690	464787;464788;464789;464790;464791;464792;464793;464794;464795;464796;464797;464798;464799;464800;464801;464802;464803;464804;464805;464806;464807;464808	464794			22	
VTEGSFVYKGGK	2	Acetyl (K)	1312.6663	0.66631685	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							3				1	1	1	51.284	40.775	2	2.5066E-19	23819	160513_QHF_FH_JSI11Kac_4	158.79	140.35			0.6135	0.67655	61.956	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0265	1.2281	NaN	1	0	Median	0.35794	0.35581	NaN	1	0	Median	0.6135	0.67655	NaN	1	0	Median	105900000	75989000	29907000	0	0	0	18452000	9797700	8654700	74721000	57333000	17388000	12723000	8858100	3864800	56782	1702	53484	344691;344692;344693	464809;464810;464811;464812	464810	1715		4	
VTELALTASDR	0	Unmodified	1174.6194	0.61936665	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.55	3	4	3			1		1		3	4	3	2	41.292	38.765	2	4.8618E-06	33014	160511_QHF_FH_JSI12i_2	111.06	91.786			0.87963	1.0057	11.523	11	1	Median	1.3285	1.1268	10.558	3	0	Median	0.85264	1.0042	9.8645	4	1	Median	1.0483	1.0452	11.232	2	0	Median	0.82647	0.90863	9.5116	2	0	Median	1989900000	1019900000	969930000	264600000	112870000	151720000	641440000	375110000	266330000	552080000	254670000	297410000	531750000	277280000	254460000	56783	2094	53485	344694;344695;344696;344697;344698;344699;344700;344701;344702;344703;344704;344705	464813;464814;464815;464816;464817;464818;464819;464820;464821;464822;464823;464824;464825;464826;464827;464828;464829;464830;464831	464815			19	
VTELEDEVR	0	Unmodified	1088.535	0.53496832	4458	Q9BV38	WDR18	WD repeat-containing protein 18	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									1			2	29.477	28.678	2	0.011327	25753	160511_QHF_FH_JSI12i_1	58.426	33.607			1.3669	1.1364	16.95	3	2	Median	1.3704	1.1364	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1552	1.1984	23.575	2	2	Median	289830000	144330000	145500000	76608000	32415000	44193000	0	0	0	0	0	0	213220000	111910000	101310000	56784	4458	53486	344706;344707;344708	464832;464833;464834	464833			3	
VTELNPDK	1	Unmodified	914.47091	0.4709115	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		15.401	14.828	2	0.0053541	12165	160511_QHF_FH_JSI9i_1	63.419	37.525			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56785	5743	53487	344709;344710	464835;464836	464836			2	
VTELQQQPLCTSVNTIYDNAVQGLR	0	Unmodified	2846.4233	0.42325639	3968	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	97.622	97.422	3	1.3736E-08	88324	160511_QHF_FH_JSI12i_1	80.293	74.974			1.4359	1.5053	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4359	1.5053	NaN	1	1	Median	20444000	5656100	14788000	0	0	0	0	0	0	0	0	0	20444000	5656100	14788000	56786	3968	53488	344711	464837	464837			1	
VTELVDAVYDPYKPYQLK	2	Unmodified	2140.1092	0.10922268	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	77.576	76.746	3	0.0024606	68336	160511_QHF_FH_JSI10i_2	50.053	39.677			1.1188	1.2752	36.467	4	4	Median	NaN	NaN	NaN	0	0	Median	0.79546	0.97284	56.696	2	2	Median	1.3256	1.3355	NaN	1	1	Median	1.0669	1.2176	NaN	1	1	Median	100330000	54427000	45904000	0	0	0	40317000	24683000	15634000	24173000	11849000	12324000	35841000	17895000	17946000	56787	2119	53489	344712;344713;344714;344715;344716	464838;464839;464840;464841;464842;464843	464843			6	
VTENIPQIISFIEGIIAR	0	Unmodified	2012.1306	0.13062683	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.82	95.359	3	4.5516E-06	57408	160513_QHF_FH_JSI10Kac_6	95.094	79.329			1.052	1.0539	4.9703	2	1	Median	1.2798	1.0916	NaN	1	1	Median	0.86475	1.0175	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123540000	56029000	67513000	44218000	14215000	30003000	79324000	41814000	37511000	0	0	0	0	0	0	56788	4819	53490	344717;344718	464844;464845;464846	464845			3	
VTEQEWR	0	Unmodified	946.45084	0.45084476	931	P09497	CLTB	Clathrin light chain B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		17.542	17.269	2	0.030951	13933	160511_QHF_FH_JSI11i_2	51.854	17.047			0.92897	0.90014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92897	0.90014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	150990000	78145000	72847000	0	0	0	0	0	0	150990000	78145000	72847000	0	0	0	56789	931	53491	344719	464847	464847			1	
VTEWQQTYTYDSGIHSGANTCVPSVSSK	1	Unmodified	3101.4036	0.40364316	1065	P14923	JUP	Junction plakoglobin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	60.377	60.288	3	2.3132E-08	51883	160511_QHF_FH_JSI12i_3	69.248	66.663			1.0409	0.96466	42.934	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93102	0.87127	14.401	2	2	Median	1.7327	1.7943	NaN	1	0	Median	59680000	27502000	32179000	0	0	0	0	0	0	37023000	21595000	15427000	22658000	5906200	16751000	56790	1065	53492	344720;344721;344722	464848;464849;464850;464851	464850			4	
VTFDPTSSYTLEDLKPDTLYR	1	Unmodified	2460.206	0.20603619	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								2	1	2	1	89.789	89.269	3	2.7623E-06	76999	160511_QHF_FH_JSI12i_2	73.21	57.956			0.69021	0.75475	15.268	6	2	Median	0.78097	0.68543	22.184	2	2	Median	0.65785	0.81216	NaN	1	0	Median	0.66892	0.6534	11.834	2	0	Median	0.74342	0.81555	NaN	1	0	Median	263580000	153820000	109760000	89031000	50805000	38226000	48707000	29664000	19043000	80289000	42881000	37408000	45557000	30473000	15084000	56791	971	53493	344723;344724;344725;344726;344727;344728	464852;464853;464854;464855;464856;464857;464858	464853			7	
VTFEDATDFFGR	0	Unmodified	1403.6357	0.635745	3362	Q86WQ0	NR2C2AP	Nuclear receptor 2C2-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.989	85.308	2	0.014088	75153	160511_QHF_FH_JSI9i_2	43.512	38.547			1.1479	1.177	3.0079	4	0	Median	1.4014	1.1848	NaN	1	0	Median	0.94605	1.1693	NaN	1	0	Median	1.2525	1.2323	NaN	1	0	Median	1.052	1.1479	NaN	1	0	Median	131960000	57996000	73968000	23286000	9915700	13370000	28561000	14018000	14543000	41390000	16282000	25108000	38727000	17781000	20946000	56792	3362	53494	344729;344730;344731;344732	464859;464860;464861;464862	464860			4	
VTFEVFVQADAPHGVAWDSK	1	Unmodified	2202.0746	0.074568512	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	87.591	87.459	3	0.041847	75930	160511_QHF_FH_JSI12i_3	25.496	16.232			1.6875	1.7448	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6875	1.7448	NaN	1	1	Median	23132000	9665900	13466000	0	0	0	0	0	0	0	0	0	23132000	9665900	13466000	56793	3922	53495	344733	464863	464863			1	
VTFLPTGITFK	1	Unmodified	1222.6962	0.69616041	5701	Q9Y624	F11R	Junctional adhesion molecule A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	88.761	88.272	2	1.452E-05	77737	160511_QHF_FH_JSI11i_2	105.98	97.062			0.70904	0.7236	3.954	5	0	Median	0.84153	0.70834	NaN	1	0	Median	0.6185	0.75333	NaN	1	0	Median	0.75789	0.72752	6.5551	2	0	Median	0.68301	0.7236	NaN	1	0	Median	265430000	151580000	113840000	40438000	21401000	19036000	37719000	21505000	16214000	163860000	94929000	68928000	23414000	13748000	9665900	56794	5701	53496	344734;344735;344736;344737;344738	464864;464865;464866;464867;464868;464869;464870;464871;464872	464870			9	
VTFMSAVSSQEK	1	Unmodified	1312.6333	0.63330216	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48.926	48.767	2	0.0019491	41746	160511_QHF_FH_JSI12i_3	72.817	48.828			0.80217	0.81348	25.053	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73024	0.66193	NaN	1	1	Median	0.92133	0.94156	20.677	2	2	Median	162490000	87847000	74646000	0	0	0	0	0	0	34792000	17549000	17244000	127700000	70299000	57402000	56795	5334	53497	344739;344740;344741	464873;464874;464875	464874			3	
VTFQFSYGTK	1	Unmodified	1176.5815	0.58152458	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.3	6.71		2	3						5	1	2	3	4	63.751	59.126	2	3.2705E-07	32552	160513_QHF_FH_JSI10Kac_6	111.06	67.811			0.96582	1.0055	32.145	10	5	Median	1.1294	0.94686	NaN	1	0	Median	0.89266	1.0594	7.9642	2	2	Median	1.1252	0.53758	42.739	3	1	Plateau	1.0014	1.0375	28.265	4	2	Median	2508100000	1344400000	1163700000	179670000	81434000	98241000	797940000	431250000	366680000	698310000	420280000	278030000	832190000	411420000	420770000	56796	5645	53498	344742;344743;344744;344745;344746;344747;344748;344749;344750;344751	464876;464877;464878;464879;464880;464881;464882;464883;464884;464885	464884			10	
VTFQGVGDEEDEDEIIVPK	1	Unmodified	2118.0005	0.0004600951	692	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	76.192	75.771	2	1.7486E-17	68645	160511_QHF_FH_JSI10i_1	184	170.32			0.84722	0.99214	30.11	5	2	Median	0.63345	0.54003	NaN	1	0	Median	0.91764	1.0558	8.7995	2	2	Median	0.83015	0.81041	NaN	1	0	Median	1.0634	1.0836	NaN	1	0	Median	180150000	104690000	75463000	31594000	16086000	15508000	72485000	44355000	28130000	43553000	23997000	19555000	32519000	20249000	12270000	56797	692	53499	344752;344753;344754;344755;344756	464886;464887;464888;464889;464890;464891;464892	464891			7	
VTFQTPLR	0	Unmodified	960.53927	0.53926584	5714	Q9Y6A5	TACC3	Transforming acidic coiled-coil-containing protein 3	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	49.885	49.034	2	0.056342	43345	160511_QHF_FH_JSI11i_3	35.88	7.3678			0.84958	0.78595	15.498	4	0	Linear	1.3466	1.0938	NaN	1	0	Median	0.76085	0.92581	NaN	1	0	Median	0.94866	0.89817	NaN	1	0	Median	0.73842	0.74933	NaN	1	0	Median	420350000	225510000	194840000	65631000	25843000	39789000	82327000	51208000	31119000	131550000	64054000	67500000	140840000	84409000	56430000	56798	5714	53500	344757;344758;344759;344760	464893	464893			1	
VTFSEDDEIINPEDVDPSVGR	0	Unmodified	2332.0707	0.070664925	2333	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	82.155	81.814	2	5.3426E-13	74241	160511_QHF_FH_JSI10i_1	160.78	134.8			1.0642	1.2088	12.039	3	2	Median	NaN	NaN	NaN	0	0	Median	1.0609	1.2088	NaN	1	0	Median	1.0642	1.0273	NaN	1	1	Median	1.2531	1.2995	NaN	1	1	Median	64130000	28517000	35613000	0	0	0	25432000	11123000	14309000	19412000	10048000	9364200	19286000	7345900	11940000	56799	2333	53501	344761;344762;344763	464894;464895;464896;464897;464898;464899	464898			6	
VTFVNFTVTR	0	Unmodified	1182.6397	0.63970816	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	10.8	6.37			2						3	2	1	1	1	73.534	67.471	2	0.00061411	57456	160511_QHF_FH_JSI10i_3	70.816	55.435			1.0388	0.99719	3.6365	5	0	Median	1.2584	1.0475	1.642	2	0	Median	0.85188	0.97817	NaN	1	0	Median	1.0388	0.97589	NaN	1	0	Median	0.93689	0.99719	NaN	1	0	Median	706430000	272270000	434160000	335750000	115620000	220130000	126390000	74552000	51842000	143570000	46302000	97263000	100720000	35795000	64924000	56800	2517	53502	344764;344765;344766;344767;344768	464900;464901;464902;464903;464904;464905	464901			6	
VTGAALIPPPGGTSLTSLGQAAQ	0	Unmodified	2106.1321	0.13208339	4433	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	91.654	91.049	2;3	0.0090109	80831	160511_QHF_FH_JSI9i_1	56.482	44.505			0.79948	0.7338	36.69	2	2	Median	1.168	0.95115	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.54724	0.56612	NaN	1	1	Median	22444000	13331000	9113300	13839000	7116000	6722900	0	0	0	0	0	0	8605500	6215100	2390400	56801	4433	53503	344769;344770	464906;464907	464907			2	
VTGADVPMPYAK	1	Unmodified	1247.622	0.62200919	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	49.546	48.869	2;3	4.21E-05	43464	160511_QHF_FH_JSI9i_1	101.97	80.229			0.57671	0.68305	31.727	5	1	Median	0.84021	0.68305	NaN	1	0	Median	0.57671	0.69645	NaN	1	1	Median	0.51406	0.49755	NaN	1	0	Median	0.80519	0.8358	47.186	2	0	Median	2444800000	1368500000	1076400000	650930000	340860000	310070000	622910000	382760000	240150000	534030000	262450000	271580000	636970000	382400000	254570000	56802	990	53504	344771;344772;344773;344774;344775	464908;464909;464910;464911;464912;464913;464914;464915;464916	464916			9	
VTGDDSMR	0	Unmodified	879.37563	0.37563091	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.17	5.55	3	1				2					2	3	1	7.7825	5.1866	2	0.0226	4956	160511_QHF_FH_JSI11i_1	43.808	34.058			1.0904	1.0586	17.994	6	0	Median	NaN	NaN	NaN	0	0	Median	0.8339	0.9816	2.0769	2	0	Median	1.1234	1.1041	22.059	3	0	Median	1.1951	1.271	NaN	1	0	Median	3953200000	1871200000	2082000000	0	0	0	1573500000	794800000	778650000	1169900000	433730000	736180000	1209900000	642700000	567170000	56803	1192	53505	344776;344777;344778;344779;344780;344781	464917;464918;464919;464920;464921	464917			5	
VTGEADVEFATHEDAVAAMAK	1	Unmodified	2160.9997	0.99974859	1864	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	3	2	63.328	62.599	3	3.0565E-09	54494	160511_QHF_FH_JSI11i_2	96.131	86.601			0.82097	0.90479	19.131	7	3	Median	1.2627	1.1146	NaN	1	1	Median	0.69456	0.83794	7.8267	2	1	Median	0.8566	0.83252	35.527	2	1	Median	0.90218	0.96794	9.5419	2	0	Median	342420000	172520000	169890000	36034000	13372000	22662000	114160000	62676000	51485000	78311000	38080000	40230000	113910000	58395000	55515000	56804	1864	53506	344782;344783;344784;344785;344786;344787;344788;344789	464922;464923;464924;464925;464926;464927;464928;464929;464930;464931	464929			10	
VTGEADVEFATHEDAVAAMSK	1	Oxidation (M)	2192.9896	0.98957783	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	49.964	48.566	3	0.00041628	41557	160511_QHF_FH_JSI12i_2	48.656	20.478			0.79207	0.85884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79207	0.85884	NaN	1	0	Median	22758000	12732000	10026000	0	0	0	0	0	0	0	0	0	22758000	12732000	10026000	56805	1383	53507	344790	464932	464932		1022	1	
VTGEADVEFATHEDAVAAMSK	1	Unmodified	2176.9947	0.99466321	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.2	0.4	4	1									2		3	60.818	60.135	3	1.9688E-15	51227	160511_QHF_FH_JSI12i_2	119.06	5.0762			0.80553	1.169	17.475	5	1	Linear	NaN	NaN	NaN	0	0	Median	0.70469	0.8294	17.775	2	1	Median	NaN	NaN	NaN	0	0	Median	1.019	1.1525	19.165	3	0	Plateau	517930000	281150000	236780000	0	0	0	220480000	124200000	96275000	0	0	0	297450000	156940000	140510000	56806	1383	53507	344791;344792;344793;344794;344795	464933;464934;464935;464936;464937;464938	464933			6	
VTGEADVEFATHEEAVAAMSK	1	Unmodified	2191.0103	0.010313275	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.82	0.386	2	9								2	5	3	1	62.877	62.154	3	7.1335E-10	54106	160511_QHF_FH_JSI11i_2	109.85	89.222			0.74806	0.83233	28.467	10	5	Median	0.82116	0.70096	27.583	2	1	Median	0.61914	0.74413	28.587	4	2	Median	0.57622	0.57982	39.608	3	2	Plateau	0.81495	0.90383	NaN	1	0	Median	852940000	497690000	355250000	127130000	69750000	57375000	323800000	195720000	128080000	261270000	150130000	111140000	140750000	82089000	58661000	56807	1775	53508	344796;344797;344798;344799;344800;344801;344802;344803;344804;344805;344806	464939;464940;464941;464942;464943;464944;464945;464946;464947;464948;464949;464950;464951;464952;464953;464954;464955	464952			17	
VTGEVHIGGVMLK	1	Unmodified	1338.733	0.73295662	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	3	2	3	2	54.958	51.664	3	5.9234E-05	45543	160511_QHF_FH_JSI10i_2	67.519	54.564			0.96306	1.1011	13.967	10	0	Linear	0.9573	0.82239	7.5781	3	0	Median	0.69032	0.84321	14.806	2	0	Median	1.0217	0.97442	7.5908	3	0	Plateau	1.0344	1.0981	16.717	2	0	Median	651210000	325980000	325230000	116690000	55150000	61541000	105650000	56954000	48697000	231320000	122430000	108890000	197540000	91444000	106100000	56808	3965	53509	344807;344808;344809;344810;344811;344812;344813;344814;344815;344816	464956;464957;464958;464959;464960;464961;464962;464963;464964;464965;464966;464967;464968	464965			12	
VTGEVLDILTR	0	Unmodified	1214.6871	0.68705229	590	O75955	FLOT1	Flotillin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.048	75.201	2	0.010996	65982	160511_QHF_FH_JSI11i_2	46.64	24.111			1.0276	1.0513	11.977	4	0	Median	1.1978	1.0103	NaN	1	0	Median	0.88708	1.094	NaN	1	0	Median	1.1904	1.1887	NaN	1	0	Median	0.81554	0.89729	NaN	1	0	Median	248040000	132870000	115170000	40698000	19347000	21351000	59129000	33793000	25335000	88175000	45923000	42253000	60034000	33807000	26226000	56809	590	53510	344817;344818;344819;344820	464969;464970;464971	464970			3	
VTGGAASKLSK	2	Acetyl (K)	1059.5924	0.59242362	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	0.786						4	3	2		1	3	2	3	28.714	18.818	2	8.5659E-05	5672	160513_QHF_FH_JSI9Kac_3	97.734	71.35			0.8332	0.86569	19.514	9	0	Median	1.6369	1.3316	NaN	1	0	Median	0.7567	0.91049	17.996	3	0	Plateau	0.81699	0.79752	8.026	2	0	Median	0.77073	0.83412	13.488	3	0	Plateau	471100000	255570000	215520000	159190000	82034000	77152000	100410000	57096000	43316000	64039000	35366000	28674000	147460000	81078000	66383000	56810	1546	53511	344821;344822;344823;344824;344825;344826;344827;344828;344829	464972;464973;464974;464975;464976;464977;464978;464979	464976	1564		8	
VTGGIFSVTK	1	Unmodified	1007.5651	0.56514624	3763	Q8WUH6	TMEM263	Transmembrane protein 263	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.56	6.45		1	4					1	3	2	2	2	3	53.345	48.016	2	0.00059875	42290	160511_QHF_FH_JSI11i_3	70.908	42.69			1.0836	1.0714	32.855	8	2	Median	1.3162	1.1302	0.459	2	0	Median	1.2107	1.4106	NaN	1	1	Median	0.99776	0.94447	20.852	2	0	Median	0.91098	0.99826	44.657	3	1	Median	2150600000	1064000000	1086600000	67428000	25457000	41970000	323120000	176700000	146420000	632730000	334860000	297870000	1127300000	526940000	600360000	56811	3763	53512	344830;344831;344832;344833;344834;344835;344836;344837;344838	464980;464981;464982;464983;464984;464985;464986;464987;464988	464981			9	
VTGGYPFEAYK	1	Unmodified	1230.5921	0.59208927	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.196	49.8	2	0.012108	42641	160511_QHF_FH_JSI12i_2	55.084	34.755			0.57621	0.64686	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57621	0.64686	NaN	1	1	Median	148640000	114980000	33658000	0	0	0	0	0	0	0	0	0	148640000	114980000	33658000	56812	5	53513	344839	464989	464989			1	
VTGPQATTGTPLVTMRPASQAGK	1	Unmodified	2268.1896	0.18961504	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			50.22	48.634	3	0.0077365	39740	160511_QHF_FH_JSI9i_3	32.706	18.245			0.82642	0.81298	24.415	2	0	Median	1.178	0.96618	NaN	1	0	Median	0.57978	0.68408	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	40117000	18081000	22036000	20812000	9756500	11056000	19305000	8325000	10980000	0	0	0	0	0	0	56813	1743	53514	344840;344841	464990;464991	464991			2	
VTGQFPWSSLR	0	Unmodified	1276.6564	0.65642086	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							3	2	2	1	70.57	69.695	2	0.00069372	57316	160511_QHF_FH_JSI9i_3	82.261	69.224			0.75986	0.7992	21.909	8	8	Median	1.2832	1.0238	13.163	3	3	Plateau	0.7069	0.84485	7.5422	2	2	Median	0.66729	0.63739	22.922	2	2	Median	0.59915	0.60554	NaN	1	1	Median	761870000	393150000	368720000	341500000	151050000	190440000	203630000	113090000	90536000	131070000	72926000	58143000	85676000	56081000	29595000	56814	5645	53515	344842;344843;344844;344845;344846;344847;344848;344849	464992;464993;464994;464995;464996;464997;464998;464999;465000	464994			9	
VTGQNQEQFLLLAK	1	Unmodified	1587.8621	0.86205654	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	2	3	67.83	67.102	2	3.5281E-06	61137	160511_QHF_FH_JSI12i_1	122.42	96.38			0.96451	1.0007	12.81	9	3	Median	1.1324	0.93305	14.018	2	1	Median	0.79186	0.94428	4.7263	2	0	Median	0.93505	0.91912	21.813	2	0	Median	0.96451	1.0068	9.1546	3	2	Plateau	988600000	509500000	479110000	151600000	63765000	87830000	253090000	142080000	111010000	264180000	135350000	128830000	319740000	168300000	151440000	56815	5261	53516	344850;344851;344852;344853;344854;344855;344856;344857;344858	465001;465002;465003;465004;465005;465006;465007;465008;465009;465010;465011;465012;465013;465014;465015	465005			15	
VTGSLETK	1	Unmodified	833.44945	0.44944778	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.43	8	2	1		1	3	1			2	5	5	4	12.34	9.8153	1;2	0.0035769	8519	160511_QHF_FH_JSI10i_1	71.501	39.031			0.91234	1.0093	11.97	16	0	Median	1.3167	1.1086	13.833	2	0	Median	0.90024	1.0458	10.127	5	0	Median	0.9246	0.94879	10.164	5	0	Median	0.88721	0.95224	13.483	4	0	Median	17773000000	8036200000	9736400000	4117300000	1465000000	2652200000	4894200000	2483600000	2410700000	4441900000	2150800000	2291100000	4319200000	1936800000	2382400000	56816	1195	53517	344859;344860;344861;344862;344863;344864;344865;344866;344867;344868;344869;344870;344871;344872;344873;344874	465016;465017;465018;465019;465020;465021;465022;465023;465024;465025	465020			10	
VTGSLETKYR	1	Acetyl (K)	1194.6245	0.62445203	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14.5	0.5							2	2				2	2	40.523	30.613	2	6.7166E-06	18651	160513_QHF_FH_JSI11Kac_4	116.3	89.174			0.51769	0.53959	27.939	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43515	0.43053	0.85529	2	0	Median	0.63638	0.69661	5.045	2	0	Median	236400000	147270000	89127000	0	0	0	0	0	0	179750000	112830000	66912000	56654000	34439000	22215000	56817	1195	53518	344875;344876;344877;344878	465026;465027	465026	1067		2	
VTGSLSSAK	1	Unmodified	848.46035	0.46034682	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.94	4	3	1				1			2	2	3	2	10.824	9.6744	2	0.011448	7654	160511_QHF_FH_JSI11i_1	48.794	23.235			0.93559	1.0346	23.554	9	1	Median	1.3273	1.094	3.6703	2	0	Median	0.95405	1.1494	14.887	2	0	Median	1.0274	1.0889	15.187	3	0	Plateau	0.72059	0.75443	40.238	2	1	Median	7709000000	3586800000	4122300000	1463100000	484410000	978730000	2086000000	1026000000	1060000000	2444100000	1176100000	1268000000	1715800000	900250000	815550000	56818	1488	53519	344879;344880;344881;344882;344883;344884;344885;344886;344887	465028;465029;465030;465031;465032;465033;465034;465035;465036;465037;465038	465028			11	
VTGTLDANR	0	Unmodified	945.48796	0.48795855	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.1	4	2				1	3			1	3	4	2	13.111	11.674	2	0.0038344	9451	160511_QHF_FH_JSI9i_1	58.596	23.102			0.98373	0.98589	8.3155	7	0	Median	1.1542	0.96928	NaN	1	0	Median	0.92169	1.1218	12.158	2	0	Median	0.98373	1.0382	3.5547	3	0	Plateau	0.91254	0.96895	NaN	1	0	Median	9108100000	4260200000	4847800000	1829900000	764050000	1065900000	2314900000	1129200000	1185700000	2543900000	1262800000	1281100000	2419300000	1104100000	1315200000	56819	2751	53520	344888;344889;344890;344891;344892;344893;344894;344895;344896;344897	465039;465040;465041;465042;465043;465044;465045;465046;465047	465043			9	
VTGTLETK	1	Unmodified	847.4651	0.46509784	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.41	3	4				2	1			1	2	3	4	13.317	10.836	2	0.019882	9171	160511_QHF_FH_JSI10i_1	46.334	23.842			0.89764	0.98426	9.6119	10	0	Median	1.2606	1.0724	NaN	1	0	Median	0.7573	0.9141	7.3174	2	0	Median	1.0756	1.0511	10.849	3	0	Plateau	0.8655	0.95387	10.842	4	0	Median	14684000000	7662400000	7021300000	211230000	84850000	126380000	4824100000	2662500000	2161600000	4426400000	2125400000	2301000000	5221900000	2789700000	2432200000	56820	1570	53521	344898;344899;344900;344901;344902;344903;344904;344905;344906;344907	465048;465049;465050;465051;465052	465050			5	
VTGTLETKYK	2	Acetyl (K)	1180.634	0.63395408	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	0.831						4	3	3		1	3	3	3	39.162	28.721	2	0.00031527	19093	160513_QHF_FH_JSI11Kac_4	94.309	77.069			0.59971	0.64921	60.793	9	0	Median	NaN	NaN	NaN	0	0	Median	1.2004	1.4272	10.434	3	0	Median	0.35244	0.34752	2.0002	3	0	Plateau	0.59971	0.64921	11.596	3	0	Median	333580000	217760000	115820000	8070900	8070900	0	81878000	43232000	38647000	186180000	128860000	57325000	57453000	37601000	19852000	56821	1570	53522	344908;344909;344910;344911;344912;344913;344914;344915;344916;344917	465053;465054;465055;465056;465057;465058;465059;465060;465061;465062	465056	1584;1585		10	
VTGYGGWSWISK	1	Unmodified	1339.6561	0.65608651	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			74.862	71.013	2	0.0096626	38338	160513_QHF_FH_JSI10Kac_6	52.788	41.637			0.83292	0.95416	27.402	2	1	Median	NaN	NaN	NaN	0	0	Median	0.83292	0.95416	27.402	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50813000	26665000	24147000	0	0	0	50813000	26665000	24147000	0	0	0	0	0	0	56822	2311	53523	344918;344919	465063;465064	465064			2	
VTHALVNIR	0	Unmodified	1021.6033	0.60326308	2941	Q5T2E6	C10orf76	UPF0668 protein C10orf76	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			25.722	24.415	3	0.00013534	19740	160511_QHF_FH_JSI9i_3	78.149	56.701			0.98966	0.97339	6.7227	2	0	Median	1.2299	1.0208	NaN	1	0	Median	0.79633	0.9282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60036000	29908000	30128000	35268000	15418000	19850000	24768000	14490000	10278000	0	0	0	0	0	0	56823	2941	53524	344920;344921	465065;465066;465067;465068	465067			4	
VTHAVVTVPAYFNDAQR	0	Unmodified	1886.9639	0.96389585	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.33		9	8						4	5	5	6	5	59.681	57.15	2;3	7.2723E-23	50650	160511_QHF_FH_JSI11i_3	222.94	203.28			1.0278	1.0447	16.745	20	1	Median	1.2551	1.0691	12.275	5	0	Median	0.90122	1.0806	12.282	5	0	Median	1.0906	1.0376	2.3833	5	0	Median	1.0081	1.0304	28.756	5	1	Median	10243000000	5075200000	5168100000	1419200000	677050000	742140000	2115400000	1118900000	996420000	3883400000	1886000000	1997400000	2825300000	1393200000	1432100000	56824	982	53525	344922;344923;344924;344925;344926;344927;344928;344929;344930;344931;344932;344933;344934;344935;344936;344937;344938;344939;344940;344941;344942	465069;465070;465071;465072;465073;465074;465075;465076;465077;465078;465079;465080;465081;465082;465083;465084;465085;465086;465087;465088;465089;465090;465091;465092;465093;465094;465095;465096;465097;465098;465099;465100;465101;465102;465103;465104;465105;465106;465107;465108;465109;465110;465111;465112;465113;465114	465073			46	
VTHELQAMK	1	Unmodified	1055.5434	0.54336494	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	14.079	13.622	2;3	5.6772E-06	10685	160511_QHF_FH_JSI11i_2	91.867	72.624			0.7867	0.88793	27.791	6	1	Median	1.3685	1.1702	NaN	1	0	Median	0.9366	1.1632	25.929	2	1	Median	0.74606	0.75925	9.8783	2	0	Median	0.63294	0.70856	NaN	1	0	Median	1195100000	631310000	563770000	87263000	47061000	40202000	370260000	208130000	162130000	604230000	316370000	287850000	133330000	59742000	73589000	56825	1131	53526	344943;344944;344945;344946;344947;344948;344949	465115;465116;465117;465118;465119;465120;465121;465122;465123	465118			8	
VTHELQAMKDK	2	Acetyl (K)	1340.6758	0.67583567	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		33.212	24.381	3	0.025446	13824	160513_QHF_FH_JSI10Kac_6	42.031	29.023			0.92514	0.99865	28.813	2	2	Median	NaN	NaN	NaN	0	0	Median	0.68315	0.81457	NaN	1	1	Median	1.2528	1.2243	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	14580000	7383400	7196500	0	0	0	8534700	4833500	3701200	6045200	2549900	3495300	0	0	0	56826	1131	53527	344950;344951	465124;465125	465125	982		2	
VTHELQAMKDK	2	Acetyl (K);Oxidation (M)	1356.6708	0.6707503	1131	P17980	PSMC3	26S protease regulatory subunit 6A	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		19.293	9.8598	3	0.0012187	7837	160513_QHF_FH_JSI11Kac_5	65.179	50.922			0.27844	0.26887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27844	0.26887	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3617600	2910000	707590	0	0	0	0	0	0	3617600	2910000	707590	0	0	0	56827	1131	53527	344952	465126	465126	982	758	1	
VTHETSAHEGQTEAPSIDEK	1	Unmodified	2164.9873	0.98726965	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	3.5		6	5					1		3	2	5	2	17.516	16.345	2;3;4	3.844E-13	13360	160511_QHF_FH_JSI11i_3	116.08	86.392			0.8497	0.89248	19.933	11	0	Median	1.4023	1.1961	21.809	3	0	Median	0.84215	1.0427	3.6575	2	0	Median	0.80242	0.79572	17.487	4	0	Median	0.84408	0.85616	0.31566	2	0	Median	1178100000	612530000	565550000	134490000	52392000	82093000	158640000	92813000	65827000	504730000	276880000	227840000	380230000	190440000	189790000	56828	1076	53528	344953;344954;344955;344956;344957;344958;344959;344960;344961;344962;344963;344964	465127;465128;465129;465130;465131;465132;465133;465134;465135;465136;465137;465138;465139;465140;465141;465142;465143;465144;465145;465146;465147;465148	465131			22	
VTHFSIVLTAK	1	Unmodified	1214.7023	0.70230842	3704	Q8TCE6;Q6NSW5	FAM45A;FAM45B	Protein FAM45A;Protein FAM45B	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	16	0									4	1	1	1	1	61.51	52.246	3	0.0062362	27739	160513_QHF_FH_JSI9Kac_6	52.247	45.926			0.87941	0.90301	8.4537	4	0	Median	1.025	0.87933	NaN	1	0	Median	0.80584	0.92733	NaN	1	0	Median	0.9597	0.93205	NaN	1	0	Median	0.73778	0.77714	NaN	1	0	Median	37917000	19649000	18269000	8857100	4359900	4497300	13470000	7515300	5954800	8305300	3873000	4432400	7284900	3900600	3384200	56829	3704	53529	344965;344966;344967;344968	465149;465150	465150			0	
VTHLFDVHSLEQQSEITPK	1	Unmodified	2207.1222	0.12224699	3199	Q70CQ3	USP30	Ubiquitin carboxyl-terminal hydrolase 30	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.796	66.5	4	0.00061912	57524	160511_QHF_FH_JSI12i_3	49.224	40.177			0.75777	0.76849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75777	0.76849	NaN	1	0	Median	34444000	14885000	19559000	0	0	0	0	0	0	0	0	0	34444000	14885000	19559000	56830	3199	53530	344969	465151	465151			1	
VTHLYQLK	1	Unmodified	1000.5706	0.57056597	4668	Q9H270	VPS11	Vacuolar protein sorting-associated protein 11 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	24.828	24.295	2;3	0.00066997	19957	160511_QHF_FH_JSI12i_3	69.825	54.163			0.76525	0.89919	41.333	5	2	Median	1.0848	0.89919	NaN	1	0	Median	0.76525	0.90271	NaN	1	0	Median	0.53402	0.5116	NaN	1	1	Median	0.59648	0.62676	65.834	2	1	Median	160320000	100810000	59512000	31676000	13257000	18419000	26269000	17095000	9173900	42171000	30626000	11545000	60204000	39829000	20375000	56831	4668	53531	344970;344971;344972;344973;344974	465152;465153;465154;465155;465156	465155			4	
VTHTETGKVLFGPEAPK	2	Acetyl (K)	1851.9731	0.97306355	1736	P51531	SMARCA2	Probable global transcription activator SNF2L2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0								4		1	1	1	1	59.943	49.215	3	0.010914	26944	160513_QHF_FH_JSI11Kac_5	50.079	39.292			0.41895	0.45128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41895	0.45128	NaN	1	1	Median	4981400	874310	4107100	745140	0	745140	1000500	0	1000500	815070	0	815070	2420600	874310	1546300	56832	1736	53532	344975;344976;344977;344978	465157;465158;465159;465160;465161	465158	1752		5	
VTHTGQVYDDK	1	Unmodified	1261.5939	0.59388018	514	O75380	NDUFS6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		9								2	2	3	2	9.2737	8.8366	2;3	3.8865E-07	6471	160511_QHF_FH_JSI12i_2	102.4	93.887			0.86108	0.98563	21.086	9	3	Median	1.1935	1.0199	3.6503	2	0	Median	0.77519	0.94542	5.8909	2	0	Median	1.3016	1.3215	27.5	3	3	Median	0.71955	0.79935	4.9936	2	0	Median	1542800000	813740000	729020000	237500000	102530000	134970000	275860000	180330000	95536000	726180000	348030000	378150000	303220000	182860000	120360000	56833	514	53533	344979;344980;344981;344982;344983;344984;344985;344986;344987	465162;465163;465164;465165;465166;465167;465168;465169;465170;465171;465172;465173;465174;465175;465176	465165			15	
VTHYFFWLLK	1	Unmodified	1352.7281	0.72812924	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	3	1	85.74	77.647	2;3	4.3186E-07	43952	160513_QHF_FH_JSI10Kac_6	121.83	106.07			0.9949	0.95058	19.101	7	1	Median	1.0289	0.87305	12.031	2	0	Median	0.98436	1.1615	14.904	2	0	Median	1.1914	1.1289	26.566	2	1	Median	0.88148	0.92602	NaN	1	0	Median	5624100000	2868100000	2756000000	1825200000	898920000	926240000	1467400000	784790000	682640000	1291700000	635360000	656310000	1039900000	549040000	490820000	56834	162	53534	344988;344989;344990;344991;344992;344993;344994;344995	465177;465178;465179;465180;465181;465182;465183;465184;465185;465186;465187	465185			11	
VTIAQGGVLPNIQAVLLPK	1	Unmodified	1930.1615	0.16153303	819;2765	Q99878;Q96KK5;Q93077;Q7L7L0;P20671;P0C0S8;P04908;Q9BTM1;Q16777;Q6FI13	HIST1H2AJ;HIST1H2AH;HIST1H2AC;HIST3H2A;HIST1H2AD;HIST1H2AG;HIST1H2AB;H2AFJ;HIST2H2AC;HIST2H2AA3	Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-B/E;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.863	6	3	4							2	3	3	5	101.52	101.44	2;3	5.111E-111	90574	160511_QHF_FH_JSI11i_3	236.28	212.53			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56835	819;2765	53535	344996;344997;344998;344999;345000;345001;345002;345003;345004;345005;345006;345007;345008	465188;465189;465190;465191;465192;465193;465194;465195;465196;465197;465198;465199;465200	465189			13	
VTIDPENNLISIWNNGK	1	Unmodified	1925.9847	0.98469087	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.4	0.49		3	2									2	3	96.997	96.732	2;3	2.8102E-06	83704	160511_QHF_FH_JSI12i_3	116.24	99.465			1.1562	1.3132	45.418	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.7656	3.6699	NaN	1	1	Median	1.1644	1.3213	33.654	3	2	Plateau	39965000	12635000	27330000	0	0	0	0	0	0	6999800	1477700	5522100	32965000	11158000	21808000	56836	999	53536	345009;345010;345011;345012;345013	465201;465202;465203;465204;465205;465206;465207	465207			7	
VTIEYYSQLK	1	Unmodified	1242.6496	0.64960415	1645	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.546	55.354	2	7.02E-06	30497	160513_QHF_FH_JSI10Kac_6	111.46	87.5			0.99494	0.75779	24.231	4	0	Linear	0.94529	0.81132	NaN	1	0	Median	0.96879	1.1652	NaN	1	0	Median	0.71596	0.68754	NaN	1	0	Median	0.64631	0.70779	NaN	1	0	Median	74677000	37773000	36904000	24289000	11793000	12496000	31768000	16533000	15235000	10812000	5333500	5478700	7808400	4113100	3695300	56837	1645	53537	345014;345015;345016;345017	465208;465209;465210;465211;465212	465212			5	
VTILCDKFSGHPK	2	Acetyl (K)	1542.7864	0.78644876	3315	Q86U42;A6NDY0	PABPN1;PABPN1L	Polyadenylate-binding protein 2;Embryonic polyadenylate-binding protein 2	yes	no	1	0	0	1			By MS/MS		16	0									1			1		63.243	53.544	3	0.00045141	29016	160513_QHF_FH_JSI11Kac_6	72.417	60.625			0.43268	0.4253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43268	0.4253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12678000	9379000	3298800	0	0	0	0	0	0	12678000	9379000	3298800	0	0	0	56838	3315	53538	345018	465213	465213	2829		1	
VTILELFR	0	Unmodified	989.59097	0.59096706	986	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1	1	2	1	1	94.047	92.551	2	0.00015009	82540	160511_QHF_FH_JSI12i_3	124.83	109.4			0.95287	0.95949	16.242	5	0	Median	1.5236	1.2579	NaN	1	0	Median	0.91264	1.0696	15.43	2	0	Median	0.92288	0.8566	NaN	1	0	Median	0.95287	0.95949	NaN	1	0	Median	248450000	120840000	127610000	40917000	14123000	26793000	76851000	39082000	37768000	49305000	25341000	23964000	81377000	42290000	39087000	56839	986	53539	345019;345020;345021;345022;345023	465214;465215;465216;465217;465218;465219;465220	465218			7	
VTILGHVQR	0	Unmodified	1021.6033	0.60326308	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47			5						6	4	2	2	3	32.479	27.178	2;3	0.00012265	15453	160513_QHF_FH_JSI10Kac_6	109.36	64.59			0.99402	1.078	30.253	11	1	Median	1.4412	1.2488	32.372	4	1	Median	0.92301	1.0753	10.898	2	0	Median	0.91818	0.89013	18.044	2	0	Median	0.99402	1.078	43.312	3	0	Median	740060000	344540000	395510000	402530000	168410000	234120000	199490000	104170000	95327000	85348000	46309000	39038000	52689000	25657000	27031000	56840	2176	53540	345024;345025;345026;345027;345028;345029;345030;345031;345032;345033;345034	465221;465222;465223;465224;465225;465226;465227;465228;465229;465230;465231;465232;465233	465233			12	
VTIMGIYSIK	1	Unmodified	1123.6311	0.63111731	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.62		3	2					2	3	3	3	3	1	79.958	74.073	2	8.4267E-12	39169	160513_QHF_FH_JSI11Kac_6	147.2	98.405			0.95967	0.95515	9.3493	8	0	Median	1.1293	0.97979	19.171	2	0	Median	0.79583	0.92288	2.8107	2	0	Median	1.0268	0.96911	8.4003	3	0	Median	0.9182	1.0214	NaN	1	0	Median	8690000000	4402100000	4287900000	2538400000	1076800000	1461600000	3908000000	2140400000	1767500000	2188200000	1152400000	1035800000	55391000	32439000	22952000	56841	1410	53541	345035;345036;345037;345038;345039;345040;345041;345042;345043;345044	465234;465235;465236;465237;465238;465239;465240;465241;465242;465243;465244	465237			11	
VTIMGIYSIK	1	Oxidation (M)	1139.626	0.62603194	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.49								4	6	3	2	2	3	72.127	62.53	2	0.0030617	33080	160513_QHF_FH_JSI9Kac_6	66.568	47.792			0.95905	0.96319	18.061	10	0	Median	1.1727	1.0216	11.753	3	0	Median	0.6337	0.74583	24.315	2	0	Median	0.99594	0.96473	8.4525	2	0	Median	0.96358	1.0423	22.643	3	0	Plateau	547410000	277640000	269760000	159400000	74428000	84975000	125990000	66009000	59981000	135620000	68124000	67494000	126400000	69082000	57314000	56842	1410	53541	345045;345046;345047;345048;345049;345050;345051;345052;345053;345054	465245;465246;465247;465248;465249;465250;465251;465252	465248		1063	8	
VTIMGIYSIKK	2	Unmodified	1251.7261	0.72608033	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		62.262	61.256	3	0.0013617	50405	160511_QHF_FH_JSI9i_3	62.14	58.286			0.99366	1.0106	18.507	3	2	Plateau	1.2257	1.0106	NaN	1	1	Median	1.1558	1.3361	NaN	1	0	Median	0.99366	0.94155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	122850000	55624000	67228000	41651000	19460000	22192000	24243000	9771200	14471000	56957000	26393000	30565000	0	0	0	56843	1410	53542	345055;345056;345057	465253;465254;465255	465255			2	
VTIPPPSSSVAISNHVTPPPIPK	1	Unmodified	2334.2947	0.29473204	3613	Q8NC96	NECAP1	Adaptin ear-binding coat-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	73.248	72.954	3	0.00019372	63151	160511_QHF_FH_JSI12i_3	45.88	38.346			1.2001	1.1249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2001	1.1249	NaN	1	0	Median	31526000	17283000	14243000	0	0	0	0	0	0	0	0	0	31526000	17283000	14243000	56844	3613	53543	345058	465256;465257	465256			2	
VTISFMK	1	Unmodified	824.44661	0.44661101	1793	P53041	PPP5C	Serine/threonine-protein phosphatase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	55.205	54.396	2	0.019031	46528	160511_QHF_FH_JSI12i_3	58.981	27.692			1.0175	0.96358	5.0417	5	0	Median	1.1131	0.96358	NaN	1	0	Median	0.75783	0.91867	NaN	1	0	Median	1.0237	1.0513	NaN	1	0	Median	0.93632	0.98122	2.8038	2	0	Median	865690000	437050000	428640000	122440000	52806000	69634000	121360000	68449000	52908000	159550000	78042000	81505000	462350000	237760000	224590000	56845	1793	53544	345059;345060;345061;345062;345063;345064	465258;465259;465260;465261;465262;465263	465263			6	
VTKPEPAALPGLDTK	2	Unmodified	1535.8559	0.85590853	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	46.975	46.734	3	0.031031	39932	160511_QHF_FH_JSI12i_3	33.308	30.228			0.87978	0.92366	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87978	0.92366	NaN	1	0	Median	70319000	39332000	30987000	0	0	0	0	0	0	0	0	0	70319000	39332000	30987000	56846	719	53545	345065	465264;465265	465264			2	
VTKPVQIQK	2	Unmodified	1039.639	0.63897988	5058	Q9NW13	RBM28	RNA-binding protein 28	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	14.778	13.933	3	0.005003	10529	160511_QHF_FH_JSI12i_3	46.335	37.331			1.2666	1.432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2666	1.432	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107680000	54232000	53452000	0	0	0	107680000	54232000	53452000	0	0	0	0	0	0	56847	5058	53546	345066;345067;345068	465266;465267;465268	465268			3	
VTKSYSFDEIRK	2	Acetyl (K)	1513.7777	0.77765821	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	1	0	0	2			By MS/MS		15.5	0.5								1	1			2		55.196	44.92	3	0.00038688	24305	160513_QHF_FH_JSI11Kac_6	89.629	69.248			0.115	0.1146	35.278	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.115	0.1146	35.278	2	2	Median	NaN	NaN	NaN	0	0	Median	24323000	22954000	1368500	0	0	0	0	0	0	24323000	22954000	1368500	0	0	0	56848	1566	53547	345069;345070	465269;465270	465269	1580		2	
VTLADITVVCTLLWLYK	1	Unmodified	2007.1115	0.11147129	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	1.57				1					8	2	2	2	3	101.88	93.436	2;3	2.4587E-70	56633	160513_QHF_FH_JSI10Kac_6	257.52	241.76			0.89108	0.95098	26.458	8	2	Median	1.3904	1.1754	26.919	2	1	Median	0.74451	0.88842	6.5735	2	0	Median	0.79357	0.75401	3.2836	2	0	Median	1.1772	1.2611	25.465	2	1	Median	812590000	434050000	378550000	202590000	85459000	117140000	496370000	285310000	211070000	101050000	57752000	43300000	12574000	5528800	7045100	56849	1284	53548	345071;345072;345073;345074;345075;345076;345077;345078;345079	465271;465272;465273;465274;465275;465276;465277;465278;465279;465280;465281;465282;465283;465284;465285	465284			15	
VTLATLK	1	Unmodified	744.47454	0.47454032	857	P06748	NPM1	Nucleophosmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.48	4	4	6				1	4	4	5	5	8	5	41.198	36.935	2	0.015369	31986	160511_QHF_FH_JSI11i_3	64.757	17.014			1.0599	1.0394	47.913	23	2	Median	1.1701	1.0455	24.868	5	0	Median	0.87327	1.0031	11.733	5	0	Median	1.0239	1.0224	72.113	8	2	Median	1.4535	1.4546	32.692	5	0	Median	53320000000	23069000000	30252000000	8567600000	3459500000	5108100000	11341000000	5336300000	6004700000	19644000000	9324000000	10320000000	13768000000	4948700000	8819000000	56850	857	53549	345080;345081;345082;345083;345084;345085;345086;345087;345088;345089;345090;345091;345092;345093;345094;345095;345096;345097;345098;345099;345100;345101;345102	465286;465287;465288;465289;465290;465291;465292;465293;465294;465295;465296;465297;465298;465299;465300;465301;465302;465303;465304;465305;465306;465307;465308;465309;465310;465311;465312;465313;465314;465315;465316;465317;465318;465319;465320;465321;465322;465323;465324;465325;465326;465327;465328	465286			43	
VTLAVSDLQK	1	Unmodified	1072.6128	0.61282471	4850	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.67	5.91	4	4					4			2	4	3	3	54.947	50.802	2	5.9066E-05	45212	160511_QHF_FH_JSI9i_1	91.265	52.012			1.0697	1.1013	30.536	12	1	Median	1.3907	1.1706	9.3676	2	0	Median	0.865	1.0427	56.611	4	1	Median	1.163	1.1618	9.4008	3	0	Plateau	1.0563	1.105	5.5809	3	0	Median	1369300000	629890000	739410000	231850000	94604000	137250000	396170000	194430000	201740000	399130000	183430000	215700000	342150000	157420000	184720000	56851	4850	53550	345103;345104;345105;345106;345107;345108;345109;345110;345111;345112;345113;345114	465329;465330;465331;465332;465333;465334;465335;465336;465337;465338;465339;465340;465341;465342;465343;465344	465339			16	
VTLDWAK	1	Unmodified	831.44905	0.44905385	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.764	1	1	4							1	2	1	2	49.206	48.367	2	0.039053	44031	160511_QHF_FH_JSI12i_1	47.849	22.85			0.89624	0.97845	15.419	6	0	Median	0.84938	0.68199	NaN	1	0	Median	0.82573	0.97845	2.7112	2	0	Median	0.98608	0.94102	NaN	1	0	Median	0.97359	1.0186	1.0985	2	0	Median	3145500000	1576600000	1568900000	227920000	100560000	127360000	1946500000	1042600000	903920000	318770000	145630000	173140000	652360000	287850000	364510000	56852	1154	53551	345115;345116;345117;345118;345119;345120	465345;465346;465347	465345			3	
VTLDWAKPK	2	Acetyl (K)	1098.6073	0.6073454	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.793							4	4	3	2	2	4	3	71.377	61.055	2	0.00054856	30561	160513_QHF_FH_JSI10Kac_5	98.582	85.128			0.79608	0.89884	141.1	11	1	Median	1.0763	0.91948	28.18	2	0	Median	0.77303	0.92652	4.2881	2	0	Median	0.71002	0.69353	244.75	4	1	Median	0.81525	0.89006	15.078	3	0	Plateau	610850000	311500000	299350000	40230000	20865000	19365000	137600000	70296000	67306000	278190000	141990000	136190000	154830000	78340000	76491000	56853	1154	53552	345121;345122;345123;345124;345125;345126;345127;345128;345129;345130;345131	465348;465349;465350;465351;465352;465353;465354;465355;465356;465357	465356	1025		10	
VTLEGLK	1	Unmodified	758.4538	0.45380487	2911	Q5M775	SPECC1	Cytospin-B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	38.299	37.098	2	0.011468	31663	160511_QHF_FH_JSI12i_2	70.912	1.9976			0.18639	0.18178	47.257	2	0	Median	0.154	0.13015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22559	0.25391	NaN	1	0	Median	147250000	118350000	28900000	53963000	46044000	7919000	0	0	0	0	0	0	93288000	72307000	20981000	56854	2911	53553	345132;345133	465358	465358			1	
VTLEGPSATAPASSPGLAK	1	Unmodified	1752.9258	0.92577901	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	52.056	51.384	2	3.6994E-05	45626	160511_QHF_FH_JSI9i_1	112.02	88.273			1.1931	1.2565	17.585	4	0	Median	1.825	1.5559	NaN	1	0	Median	1.1646	1.3286	NaN	1	0	Median	1.2223	1.1882	NaN	1	0	Median	1.0002	1.0265	NaN	1	0	Median	132370000	62584000	69789000	31598000	12211000	19387000	35503000	18571000	16932000	34128000	17916000	16212000	31144000	13885000	17258000	56855	3094	53554	345134;345135;345136;345137;345138	465359;465360;465361;465362	465362			4	
VTLELKPLSTLQPGVNSGAVILGK	2	Unmodified	2433.4207	0.42066084	3495	Q8N0Z6	TTC5	Tetratricopeptide repeat protein 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	96.705	96.568	3	0.00039469	85931	160511_QHF_FH_JSI11i_3	48.641	36.207			0.99591	0.92381	31.736	3	2	Median	NaN	NaN	NaN	0	0	Median	0.52457	0.61758	NaN	1	1	Median	0.99591	0.92381	NaN	1	1	Median	1.1433	1.1552	NaN	1	0	Median	57623000	31300000	26323000	0	0	0	15909000	10935000	4974200	13154000	5993200	7161200	28559000	14372000	14187000	56856	3495	53555	345139;345140;345141	465363;465364;465365;465366	465363			4	
VTLENFYSNLIAQHEER	0	Unmodified	2062.012	0.011968255	2643	Q15208	STK38	Serine/threonine-protein kinase 38	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	85.914	85.473	3	0.0014024	74310	160511_QHF_FH_JSI12i_3	47.082	40.814			0.93987	0.89803	16.1	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0657	1.2203	NaN	1	0	Median	0.93987	0.89803	NaN	1	1	Median	0.99325	0.96158	NaN	1	0	Median	147420000	76506000	70912000	0	0	0	32140000	13920000	18220000	82649000	45627000	37022000	32629000	16959000	15670000	56857	2643	53556	345142;345143;345144	465367;465368;465369	465369			3	
VTLEVGK	1	Unmodified	744.43815	0.43815481	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	28.941	28.55	2	0.039053	25265	160511_QHF_FH_JSI11i_1	47.849	21.74			0.99748	1.0178	36.558	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79461	0.78598	NaN	1	0	Median	1.2521	1.3181	NaN	1	0	Median	341700000	172160000	169540000	0	0	0	0	0	0	201860000	103120000	98744000	139840000	69038000	70800000	56858	455	53557	345145;345146	465370;465371	465370			2	
VTLEYRPVIDK	1	Unmodified	1331.7449	0.74490152	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	3.16		7	7					1		4	4	4	3	50.81	49.321	2;3	0.00069688	41285	160511_QHF_FH_JSI10i_3	86.898	54.578			0.86562	0.94963	15.37	15	0	Median	1.2398	1.021	20.59	4	0	Median	0.83548	1.0554	6.3305	4	0	Linear	0.8467	0.82667	13.816	4	0	Median	0.83587	0.87043	7.6523	3	0	Median	10098000000	4777900000	5320400000	1079700000	458890000	620850000	2007400000	942950000	1064500000	3859000000	1865600000	1993300000	3152100000	1510400000	1641700000	56859	1367	53558	345147;345148;345149;345150;345151;345152;345153;345154;345155;345156;345157;345158;345159;345160;345161	465372;465373;465374;465375;465376;465377;465378;465379;465380;465381;465382;465383;465384;465385	465375			14	
VTLGLIR	0	Unmodified	770.50142	0.50142377	4928	Q9NQT5	EXOSC3	Exosome complex component RRP40	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		3	0			3							1	1	1		52.615	51.567	2	0.02747	43175	160511_QHF_FH_JSI10i_3	53.576	27.234			1.0229	0.91922	13.832	3	0	Median	1.2089	0.96558	NaN	1	0	Median	0.64658	0.74424	NaN	1	0	Median	1.0229	0.91922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	133870000	65296000	68578000	53765000	24006000	29760000	46104000	25263000	20841000	34004000	16027000	17977000	0	0	0	56860	4928	53559	345162;345163;345164	465386	465386			1	
VTLGQLQK	1	Unmodified	885.52837	0.5283668	714	O95672	ECEL1	Endothelin-converting enzyme-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	35.836	35.141	2	0.0077127	30541	160511_QHF_FH_JSI11i_3	58.679	24.94			1.199	1.1151	34.234	5	1	Median	1.199	1.0314	NaN	1	0	Median	0.89396	1.1151	NaN	1	0	Median	1.3947	1.3214	NaN	1	0	Median	1.2206	1.3032	64.639	2	1	Median	394750000	195540000	199210000	44685000	17908000	26777000	41441000	20996000	20445000	125500000	65260000	60244000	183120000	91374000	91744000	56861	714	53560	345165;345166;345167;345168;345169	465387;465388;465389;465390	465387			4	
VTLGTQPTVLR	0	Unmodified	1183.6925	0.69247202	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	49.577	48.659	2	9.9788E-10	42943	160511_QHF_FH_JSI10i_2	136.57	85.221			1.0929	1.0376	76.471	8	1	Median	1.3834	1.1457	27.898	2	0	Median	0.9379	1.1211	19.481	2	0	Median	0.38392	0.38002	151.24	2	0	Median	0.87137	0.93796	22.821	2	1	Median	2361300000	1279700000	1081600000	405620000	177080000	228550000	430800000	233860000	196940000	759120000	472920000	286200000	765780000	395830000	369940000	56862	2734	53561	345170;345171;345172;345173;345174;345175;345176;345177	465391;465392;465393;465394;465395;465396;465397;465398	465397			8	
VTLILELLQHK	1	Unmodified	1305.802	0.80202247	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0				By MS/MS	9.5	6.5			1						1				2	90.167	85.434	3	2.2703E-05	80510	160511_QHF_FH_JSI12i_3	98.353	89.165			0.35041	0.36287	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35041	0.36287	NaN	1	1	Median	28996000	16946000	12050000	0	0	0	0	0	0	0	0	0	28996000	16946000	12050000	56863	4733	53562	345178;345179	465399;465400	465399			2	
VTLKYPHYFPLLK	2	Acetyl (K)	1659.9389	0.9388503	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.444	75.127	3	0.00060578	41535	160513_QHF_FH_JSI11Kac_6	68.513	56.359			0.18302	0.17254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.18302	0.17254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135930000	116990000	18936000	0	0	0	0	0	0	135930000	116990000	18936000	0	0	0	56864	1787	53563	345180	465401;465402	465401	1799		2	
VTLLDLMIAK	1	Unmodified	1115.6624	0.66241744	5227	Q9UBB4	ATXN10	Ataxin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	2	3	3	98.306	94.903	2	2.3964E-08	89238	160511_QHF_FH_JSI11i_2	126.24	102.29			1.0525	1.0526	8.3842	10	0	Median	1.2376	1.0692	6.8725	3	0	Median	0.80074	0.98439	8.0304	2	0	Median	1.0164	1.0434	8.5398	3	0	Median	1.0414	1.1343	9.3323	2	0	Median	1981100000	971940000	1009200000	336440000	150910000	185530000	426510000	235470000	191050000	709200000	343130000	366070000	508950000	242440000	266510000	56865	5227	53564	345181;345182;345183;345184;345185;345186;345187;345188;345189;345190;345191	465403;465404;465405;465406;465407;465408;465409;465410;465411;465412;465413;465414;465415;465416;465417;465418;465419	465411			17	
VTLLEGDHVR	0	Unmodified	1137.6142	0.6142217	543	O75534	CSDE1	Cold shock domain-containing protein E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	1	1	3	32.75	31.826	2	0.00080553	27102	160511_QHF_FH_JSI12i_2	76.827	59.441			0.96151	0.9131	18.426	4	2	Median	1.0703	0.92298	NaN	1	0	Median	0.74169	0.90333	NaN	1	1	Median	0.86376	0.86357	NaN	1	0	Median	1.1992	1.2902	NaN	1	1	Median	207400000	106870000	100530000	45027000	23752000	21275000	51220000	26861000	24359000	66629000	33622000	33007000	44520000	22633000	21887000	56866	543	53565	345192;345193;345194;345195;345196;345197	465420;465421;465422;465423;465424;465425	465421			6	
VTLLLFK	1	Unmodified	832.54223	0.54222595	5579	Q9Y3C4	TPRKB	EKC/KEOPS complex subunit TPRKB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	2	1	1	1	80.798	73.919	2	0.0092714	40725	160513_QHF_FH_JSI10Kac_6	85.359	48.331			1.1109	0.99122	10.233	5	0	Median	1.1978	1.008	2.3799	2	0	Median	0.83536	0.98111	NaN	1	0	Median	0.95208	0.88939	NaN	1	0	Median	1.1109	1.1804	NaN	1	0	Median	796600000	369470000	427130000	311260000	119960000	191300000	233430000	132060000	101370000	186020000	87972000	98046000	65888000	29479000	36409000	56867	5579	53566	345198;345199;345200;345201;345202	465426;465427;465428;465429;465430;465431	465431			6	
VTLLLSSK	1	Unmodified	859.53787	0.53786886	4996	Q9NTZ6	RBM12	RNA-binding protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.38			4					1	3	3	2	2	1	53.149	47.965	2	0.024207	25526	160513_QHF_FH_JSI9Kac_6	53.775	38.999			0.7589	0.76104	21.986	8	0	Median	0.76494	0.6462	16.972	3	0	Median	0.65432	0.76976	9.7074	2	0	Median	0.89445	0.82721	24.48	2	0	Median	1.1335	1.1258	NaN	1	0	Median	393810000	202500000	191310000	67223000	35269000	31954000	75613000	43855000	31757000	147470000	74665000	72800000	103510000	48706000	54800000	56868	4996	53567	345203;345204;345205;345206;345207;345208;345209;345210	465432;465433;465434;465435	465434			4	
VTLLQLLLGHK	1	Unmodified	1233.7809	0.78089309	1625	P48552	NRIP1	Nuclear receptor-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			92.748	85.459	3	2.0421E-05	47476	160513_QHF_FH_JSI9Kac_6	93.345	70.428			0.55243	0.56423	68.978	2	2	Median	1.07	0.91894	NaN	1	1	Median	0.28522	0.34644	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61120000	36737000	24383000	33827000	14460000	19367000	27293000	22277000	5016300	0	0	0	0	0	0	56869	1625	53568	345211;345212;345213	465436;465437;465438	465436			3	
VTLMQLPTR	0	Unmodified	1057.5954	0.59540051	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	2	3	2	2	61.203	58.526	2	0.00013468	48932	160511_QHF_FH_JSI10i_3	90.696	78.629			0.84919	0.87547	17.436	9	1	Median	1.2573	1.0533	19.536	2	1	Median	0.68269	0.84591	18.277	3	0	Median	0.78758	0.73781	8.2842	2	0	Median	0.83373	0.87663	0.18703	2	0	Median	3136900000	1604700000	1532200000	625650000	267040000	358610000	777800000	436370000	341430000	758240000	393420000	364820000	975180000	507880000	467310000	56870	1867	53569	345214;345215;345216;345217;345218;345219;345220;345221;345222	465439;465440;465441;465442;465443;465444;465445;465446;465447;465448;465449	465442			10	
VTLNGVPAQPLGPR	0	Unmodified	1417.8041	0.80414773	834	P05362	ICAM1	Intercellular adhesion molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	58.526	57.881	2	0.00029629	50727	160511_QHF_FH_JSI9i_2	81.865	71.342			1.4862	1.4155	54.045	4	3	Median	1.1619	0.9643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4312	1.3159	NaN	1	1	Median	2.1771	2.2835	57.324	2	2	Median	101320000	34560000	66765000	25487000	10978000	14509000	0	0	0	21055000	8174600	12881000	54783000	15407000	39375000	56871	834	53570	345223;345224;345225;345226;345227	465450;465451;465452;465453;465454;465455	465452			6	
VTLNPPGTFLEGVAK	1	Unmodified	1541.8453	0.84534384	3381	Q86Y39	NDUFA11	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	2	6	2							1	2	4	3	82.354	81.803	2	4.5565E-07	72012	160511_QHF_FH_JSI11i_2	132.59	106.54			0.79389	0.87214	17.469	10	4	Median	0.81812	0.70116	NaN	1	0	Median	0.66692	0.78927	14.474	2	0	Median	0.82749	0.80967	23.945	4	2	Median	0.84675	0.90859	6.7563	3	2	Median	631200000	325590000	305600000	55681000	26005000	29676000	94411000	51035000	43376000	249030000	130230000	118800000	232070000	118330000	113750000	56872	3381	53571	345228;345229;345230;345231;345232;345233;345234;345235;345236;345237	465456;465457;465458;465459;465460;465461;465462;465463;465464;465465;465466;465467;465468;465469;465470	465466			15	
VTLNTLQAWSK	1	Unmodified	1259.6874	0.68738664	2352	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	65.987	65.541	2	5.2315E-07	56617	160511_QHF_FH_JSI12i_3	129.16	108.25			0.85091	0.83638	3.9345	4	3	Median	NaN	NaN	NaN	0	0	Median	0.70459	0.80871	NaN	1	1	Median	0.9244	0.86672	2.9985	2	2	Median	0.81361	0.8244	NaN	1	0	Median	404850000	221390000	183460000	0	0	0	59349000	32640000	26708000	175750000	95239000	80514000	169750000	93512000	76239000	56873	2352	53572	345238;345239;345240;345241	465471;465472;465473;465474;465475	465474			5	
VTLPDGK	1	Unmodified	728.40685	0.40685468	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	26.084	23.961	2	0.0082581	20998	160511_QHF_FH_JSI11i_1	84.244	19.44			0.8035	0.82574	60.947	6	2	Median	0.55788	0.45833	90.792	2	1	Median	0.79039	0.93174	NaN	1	0	Median	0.49259	0.48577	67.492	2	1	Median	0.83323	0.88636	NaN	1	0	Median	4140300000	2579900000	1560500000	1291500000	793570000	497900000	12729000	6541500	6187900	1938000000	1311900000	626130000	898140000	467880000	430260000	56874	1282	53573	345242;345243;345244;345245;345246;345247;345248	465476;465477;465478;465479;465480;465481;465482;465483;465484;465485	465476			10	
VTLQEVLTLLPNSMALLLQK	1	Unmodified	2223.2912	0.29122657	2993	Q5VW36	FOCAD	Focadhesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			103.13	95.667	3	5.4935E-11	54385	160513_QHF_FH_JSI9Kac_6	118.37	102.78			1.0587	1.0524	24.77	2	0	Median	1.4708	1.2539	NaN	1	0	Median	0.76205	0.88335	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	169660000	85096000	84560000	61490000	25463000	36027000	108170000	59633000	48533000	0	0	0	0	0	0	56875	2993	53574	345249;345250	465486;465487;465488	465486			3	
VTLSEGPHHVALFK	1	Unmodified	1533.8304	0.83036248	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	1	3	48.278	47.547	2;3;4	2.3927E-05	40384	160511_QHF_FH_JSI12i_3	109.22	94.963			0.97513	0.99999	16.259	5	0	Median	1.5317	1.2619	NaN	1	0	Median	0.97513	1.0964	NaN	1	0	Median	0.9022	0.83863	NaN	1	0	Median	0.927	0.94568	7.8968	2	0	Median	934870000	438030000	496840000	106890000	34081000	72806000	141550000	72865000	68689000	94614000	41910000	52704000	591820000	289170000	302640000	56876	409	53575	345251;345252;345253;345254;345255;345256	465489;465490;465491;465492;465493;465494;465495;465496;465497;465498	465497			10	
VTLSFPSTLQTGTGTLK	1	Unmodified	1749.9513	0.95126548	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.775	6	8	6							4	5	6	5	81.456	80.874	2;3	3.753E-30	72068	160511_QHF_FH_JSI11i_3	185.59	167.33			1.0185	0.99501	12.849	20	3	Median	1.0986	0.94103	8.9889	4	1	Median	0.75384	0.93981	10.135	5	0	Median	1.0629	1.0398	8.75	6	2	Median	0.88056	0.97766	17.766	5	0	Median	2221800000	1118800000	1103000000	292520000	138580000	153930000	475300000	292020000	183290000	823990000	370820000	453160000	629990000	317350000	312640000	56877	1862	53576	345257;345258;345259;345260;345261;345262;345263;345264;345265;345266;345267;345268;345269;345270;345271;345272;345273;345274;345275;345276	465499;465500;465501;465502;465503;465504;465505;465506;465507;465508;465509;465510;465511;465512;465513;465514;465515;465516;465517;465518;465519;465520;465521;465522;465523;465524;465525;465526;465527;465528;465529;465530;465531;465532	465499			34	
VTLSVLSR	0	Unmodified	873.52837	0.5283668	157	O00625	PIR	Pirin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			2						2	1	1	1	1	54.834	49.142	2	0.019744	40219	160511_QHF_FH_JSI9i_3	51.346	21.161			0.93652	0.88261	12.156	4	0	Median	1.1091	0.88458	NaN	1	0	Median	0.70518	0.80142	NaN	1	0	Median	1.0907	1.0708	NaN	1	0	Median	0.80415	0.88065	NaN	1	0	Median	383770000	203010000	180760000	162050000	80317000	81728000	165740000	92587000	73152000	42962000	22966000	19995000	13029000	7142300	5886700	56878	157	53577	345277;345278;345279;345280	465533;465534;465535	465535			3	
VTLTLPVLNAAR	0	Unmodified	1266.766	0.76597131	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	3	2	85.069	84.478	2	2.3321E-31	70586	160511_QHF_FH_JSI10i_3	189.38	139.96			0.99211	0.99182	11.852	10	0	Median	1.3156	1.0909	15.464	2	0	Median	0.81302	0.91772	11.177	3	0	Median	1.0819	1.0059	10.163	3	0	Median	0.89344	0.95083	18.419	2	0	Median	1226900000	625680000	601250000	207630000	96054000	111570000	236330000	129040000	107290000	333440000	170270000	163170000	449540000	230320000	219220000	56879	677	53578	345281;345282;345283;345284;345285;345286;345287;345288;345289;345290	465536;465537;465538;465539;465540;465541;465542;465543;465544;465545;465546;465547;465548;465549;465550;465551;465552;465553;465554;465555;465556;465557;465558	465541			23	
VTLTSEEEAR	0	Unmodified	1133.5564	0.55643205	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.03	6.32	7	4	4		1	4	3	4	3	6	7	9	8	26.04	20.976	2	2.9818E-14	18274	160511_QHF_FH_JSI11i_2	163.32	86.261			1.0003	1.0289	10.418	30	7	Median	1.2332	1.0251	9.4869	6	1	Median	0.86879	1.0305	10.993	7	2	Median	1.0027	1.0191	10.621	9	2	Median	0.98165	1.0321	10.966	8	2	Median	62510000000	28221000000	34290000000	8289800000	4076700000	4213100000	14064000000	6834400000	7229800000	18865000000	7997000000	10868000000	21291000000	9312400000	11979000000	56880	761	53579	345291;345292;345293;345294;345295;345296;345297;345298;345299;345300;345301;345302;345303;345304;345305;345306;345307;345308;345309;345310;345311;345312;345313;345314;345315;345316;345317;345318;345319;345320	465559;465560;465561;465562;465563;465564;465565;465566;465567;465568;465569;465570;465571;465572;465573;465574;465575;465576;465577;465578;465579;465580;465581;465582;465583;465584;465585;465586;465587;465588;465589;465590;465591;465592;465593	465583			35	
VTLTSEEEARLK	1	Unmodified	1374.7355	0.73545904	761	P00338	LDHA	L-lactate dehydrogenase A chain	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								1	2	3	34.864	34.377	2;3	2.3613E-05	29214	160511_QHF_FH_JSI12i_3	120.68	84.739			0.41359	0.41769	43.038	6	2	Median	NaN	NaN	NaN	0	0	Median	0.70001	0.85826	NaN	1	0	Median	0.34358	0.33314	21.712	2	1	Median	0.41318	0.7383	36.105	3	1	Plateau	1023400000	645780000	377570000	0	0	0	223490000	122830000	100670000	178950000	124520000	54427000	620910000	398430000	222480000	56881	761	53580	345321;345322;345323;345324;345325;345326	465594;465595;465596;465597;465598;465599	465599			6	
VTLVFEHVDQDLR	0	Unmodified	1569.8151	0.81510635	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	3	4	66.358	65.748	2;3	3.4677E-05	56658	160511_QHF_FH_JSI12i_3	134.2	104.45			1.0132	1.0256	16.099	9	1	Median	1.1955	1.0256	NaN	1	0	Median	0.85564	1.0455	NaN	1	0	Median	1.0132	0.99876	4.471	3	0	Median	0.94474	0.9896	25.752	4	1	Median	606820000	320920000	285900000	59487000	26740000	32748000	76500000	43053000	33448000	228880000	121460000	107420000	241960000	129670000	112290000	56882	1007	53581	345327;345328;345329;345330;345331;345332;345333;345334;345335	465600;465601;465602;465603;465604;465605;465606;465607;465608;465609;465610;465611;465612	465609			13	
VTLVQTLEIQR	0	Unmodified	1298.7558	0.75580056	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	68.26	67.482	2	0.00032487	58240	160511_QHF_FH_JSI12i_2	75.294	56.023			1.0395	1.2603	23.107	5	0	Median	1.0395	0.93483	NaN	1	0	Median	1.0312	1.2603	NaN	1	0	Median	1.2899	1.3093	NaN	1	0	Median	1.2501	1.2958	36.019	2	0	Median	221490000	100000000	121480000	36272000	16845000	19426000	44749000	21063000	23686000	28235000	11940000	16296000	112230000	50155000	62075000	56883	2636	53582	345336;345337;345338;345339;345340	465613;465614;465615;465616;465617	465613			5	
VTLVVGASQDIIPQLK	1	Unmodified	1679.9822	0.98217168	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.67	0.471	1	2									1		2	91.715	91.274	2;3	0.0023323	82707	160511_QHF_FH_JSI10i_1	54.501	42.809			1.1254	1.2667	48.176	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78581	0.90099	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6117	1.7808	NaN	1	1	Median	28952000	15667000	13284000	0	0	0	14024000	8915000	5109400	0	0	0	14927000	6752500	8174700	56884	1199	53583	345341;345342;345343	465618;465619;465620	465620			3	
VTLYNTDQDGSDSPR	0	Unmodified	1666.7435	0.74345755	5469	Q9UPW0	FOXJ3	Forkhead box protein J3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			32.965	32.625	2	6.439E-05	29141	160511_QHF_FH_JSI10i_1	75.695	60.124			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56885	5469	53584	345344	465621	465621			1	
VTMAVPEDLR	0	Unmodified	1129.5801	0.58014438	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.684	53.019	2	0.03264	48173	160511_QHF_FH_JSI12i_1	46.819	36.588			0.98239	1.0412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98239	1.0412	NaN	1	1	Median	40627000	17514000	23113000	0	0	0	0	0	0	0	0	0	40627000	17514000	23113000	56886	1726	53585	345345	465622	465622			1	
VTMINAIPVASLDPIK	1	Unmodified	1680.9484	0.94842871	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.46	0.499	7	6								4	2	4	3	100.41	100.29	2;3	4.5686E-11	88635	160511_QHF_FH_JSI9i_1	104.87	89.6			1.0925	1.0434	20.535	12	1	Median	1.1076	0.98029	18.965	3	1	Plateau	0.82044	0.95514	8.3074	2	0	Median	1.1038	1.1132	18.739	4	0	Median	1.1073	1.2056	5.4432	3	0	Plateau	296810000	142160000	154650000	58730000	28845000	29885000	40179000	21249000	18930000	137990000	65647000	72342000	59913000	26417000	33496000	56887	5658	53586	345346;345347;345348;345349;345350;345351;345352;345353;345354;345355;345356;345357;345358	465623;465624;465625;465626;465627;465628;465629;465630;465631;465632;465633;465634;465635;465636;465637;465638;465639;465640;465641;465642;465643;465644	465637			21	
VTMLFLGLHNVR	0	Oxidation (M)	1414.7755	0.77549014	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	2	3	68.782	59.857	2;3	4.9108E-19	31724	160513_QHF_FH_JSI9Kac_6	152.28	130.28			1.0654	1.1051	41.619	10	2	Median	1.1913	1.01	3.7303	2	0	Median	0.95328	1.1192	73.965	3	1	Median	1.2259	1.1834	9.5122	2	0	Median	1.0536	1.1038	33.95	3	1	Median	2910100000	1419400000	1490700000	784300000	347750000	436550000	1052400000	540450000	511910000	488650000	225070000	263580000	584830000	306150000	278680000	56888	1064	53587	345359;345360;345361;345362;345363;345364;345365;345366;345367;345368	465645;465646;465647;465648;465649;465650;465651;465652;465653;465654;465655;465656;465657;465658;465659;465660	465650		704	16	
VTMLFLGLHNVR	0	Unmodified	1398.7806	0.78057552	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	1.57				1					8	2	2	3	2	78.695	70.29	2;3	3.8165E-13	36932	160513_QHF_FH_JSI12Kac_6	157.96	131.91			1.0419	1.0697	9.8706	9	1	Median	1.303	1.0953	3.3526	2	0	Median	0.97549	1.1	5.3202	2	1	Median	1.0854	1.0268	7.1512	3	0	Plateau	1.1144	1.1775	11.291	2	0	Median	12684000000	5944500000	6739000000	1058400000	414880000	643510000	8585700000	4240700000	4345000000	2355900000	977960000	1378000000	683470000	310930000	372530000	56889	1064	53587	345369;345370;345371;345372;345373;345374;345375;345376;345377	465661;465662;465663;465664;465665;465666;465667;465668;465669;465670;465671;465672;465673;465674	465672			14	
VTMLWNK	1	Unmodified	890.46841	0.46840908	4535	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.5	0.5		3	3							2	2		2	49.229	48.092	2	0.016664	42069	160511_QHF_FH_JSI9i_2	62.714	41.56			0.89874	0.92817	11.702	6	0	Median	1.2254	1.0021	14.034	2	0	Median	0.74744	0.89811	18.653	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8613	0.92633	3.4687	2	0	Median	1134700000	562860000	571820000	234840000	100670000	134180000	348730000	163990000	184740000	0	0	0	551100000	298190000	252910000	56890	4535	53588	345378;345379;345380;345381;345382;345383	465675;465676;465677;465678;465679;465680;465681;465682	465678			8	
VTMNDEDMDTYVFAVGTR	0	Unmodified	2062.8976	0.8975917	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											2	1	81.787	81.379	2;3	7.2112E-07	74136	160511_QHF_FH_JSI11i_1	115.82	94.185			1.1234	1.0712	11.758	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1808	1.1197	6.2586	2	1	Median	0.92039	0.92713	NaN	1	0	Median	62513000	26419000	36094000	0	0	0	0	0	0	44940000	15682000	29259000	17573000	10737000	6835700	56891	3959	53589	345384;345385;345386	465683;465684;465685;465686	465683			4	
VTMNDEDMDTYVFAVGTRK	1	Unmodified	2190.9926	0.99255472	3959	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	72.838	72.691	3	1.2564E-06	64745	160511_QHF_FH_JSI11i_3	95.48	86.661			0.92549	0.90005	4.6767	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99293	0.93031	NaN	1	0	Median	0.86264	0.87077	NaN	1	0	Median	232490000	125770000	106730000	0	0	0	0	0	0	146390000	75424000	70963000	86108000	50342000	35767000	56892	3959	53590	345387;345388	465687;465688;465689;465690	465687			4	
VTMNFEPNK	1	Unmodified	1078.5117	0.51173046	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.042	38.739	2	0.054071	34920	160511_QHF_FH_JSI11i_1	34.932	13.25			0.78596	0.75645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78596	0.75645	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	20012000	11560000	8451200	0	0	0	0	0	0	20012000	11560000	8451200	0	0	0	56893	1873	53591	345389	465691	465691			1	
VTNEDFKK	2	Unmodified	979.49746	0.4974606	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2	0		5								2	1		2	10.393	9.8103	2;3	0.0046737	7736	160511_QHF_FH_JSI10i_2	55.549	24.986			0.35739	0.40071	17.037	5	5	Median	0.58342	0.49903	11.688	2	2	Median	0.317	0.38762	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33261	0.37383	9.818	2	2	Median	937890000	582720000	355170000	281560000	161390000	120170000	268930000	195340000	73596000	0	0	0	387390000	225980000	161410000	56894	1983	53592	345390;345391;345392;345393;345394	465692;465693;465694;465695;465696	465696			5	
VTNEFVHINNLK	1	Unmodified	1426.7569	0.75686319	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							1	2	2	1	48.352	47.536	2;3	0.00022155	40857	160511_QHF_FH_JSI12i_2	79.148	67.984			0.92236	1.0079	27.766	6	4	Median	1.3159	1.1566	NaN	1	1	Median	0.80416	0.9817	23.901	2	2	Median	1.257	1.2263	47.197	2	1	Median	0.80534	0.85996	NaN	1	0	Median	355190000	148310000	206880000	17009000	6303500	10706000	45476000	27550000	17926000	266610000	100630000	165980000	26089000	13819000	12271000	56895	160	53593	345395;345396;345397;345398;345399;345400	465697;465698;465699;465700;465701;465702;465703	465698			7	
VTNEYNESLLYSPEEPK	1	Unmodified	2010.9422	0.94221693	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.212	58.562	2	2.0201E-30	51923	160511_QHF_FH_JSI9i_1	191.09	174.14			1.0803	1.0466	12.955	4	0	Median	1.0983	0.89232	NaN	1	0	Median	0.83725	0.99714	NaN	1	0	Median	1.2569	1.2069	NaN	1	0	Median	1.0626	1.0985	NaN	1	0	Median	180140000	96103000	84038000	48556000	23440000	25115000	37163000	21023000	16140000	47782000	27710000	20072000	46641000	23930000	22712000	56896	2832	53594	345401;345402;345403;345404	465704;465705;465706;465707;465708;465709;465710	465710			7	
VTNGAFTGEISPGMIK	1	Unmodified	1620.8181	0.81814282	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89	9	8	8				4	7		9	9	10	8	68.352	64.477	2;3	1.7607E-80	57611	160511_QHF_FH_JSI10i_2	241.51	216.13			0.99875	1.0025	14.582	35	3	Median	1.1721	0.98422	13.425	8	0	Median	0.89343	1.0497	19.506	9	0	Median	0.97216	0.96971	9.7286	10	1	Median	1.0333	1.1214	12.328	8	2	Median	24820000000	11654000000	13166000000	4550800000	1972400000	2578400000	6589800000	3297800000	3292000000	7379000000	3384600000	3994400000	6300400000	2999000000	3301400000	56897	1908	53595	345405;345406;345407;345408;345409;345410;345411;345412;345413;345414;345415;345416;345417;345418;345419;345420;345421;345422;345423;345424;345425;345426;345427;345428;345429;345430;345431;345432;345433;345434;345435;345436;345437;345438;345439;345440	465711;465712;465713;465714;465715;465716;465717;465718;465719;465720;465721;465722;465723;465724;465725;465726;465727;465728;465729;465730;465731;465732;465733;465734;465735;465736;465737;465738;465739;465740;465741;465742;465743;465744;465745;465746;465747;465748;465749;465750;465751;465752;465753;465754;465755;465756;465757;465758;465759;465760;465761;465762;465763;465764;465765;465766;465767;465768;465769;465770;465771;465772;465773;465774;465775;465776;465777;465778;465779;465780;465781;465782;465783;465784;465785;465786;465787;465788;465789;465790;465791;465792;465793;465794;465795;465796;465797;465798;465799;465800;465801;465802;465803;465804;465805;465806;465807	465799			97	
VTNGAFTGEISPGMIK	1	Oxidation (M)	1636.8131	0.81305744	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.97	5.02	14	9	3				4	2		8	7	10	7	57.895	55.179	2;3	1.6256E-06	48920	160511_QHF_FH_JSI9i_1	128.96	114.28			1.07	1.0795	52.986	31	14	Median	0.98789	0.81573	29.695	8	3	Median	0.91371	1.0989	71.441	6	5	Median	1.0653	1.0458	51.064	10	3	Median	1.1144	1.1832	49.823	7	3	Median	2503900000	964390000	1539500000	309940000	146270000	163670000	699930000	277450000	422480000	819570000	326960000	492610000	674460000	213710000	460760000	56898	1908	53595	345441;345442;345443;345444;345445;345446;345447;345448;345449;345450;345451;345452;345453;345454;345455;345456;345457;345458;345459;345460;345461;345462;345463;345464;345465;345466;345467;345468;345469;345470;345471;345472	465808;465809;465810;465811;465812;465813;465814;465815;465816;465817;465818;465819;465820;465821;465822;465823;465824;465825;465826;465827;465828;465829;465830;465831;465832;465833;465834;465835;465836;465837;465838;465839;465840;465841;465842	465830		1567	35	
VTNGVGKK	2	Unmodified	801.47085	0.47085192	1631	P48651	PTDSS1	Phosphatidylserine synthase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			3.1787	2.7157	3	0.047444	1490	160511_QHF_FH_JSI10i_3	26.384	18.043			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20273000	0	20273000	11627000	0	11627000	8645500	0	8645500	0	0	0	0	0	0	56899	1631	53596	345473;345474	465843;465844	465843			2	
VTNLHLMLQLVR	0	Unmodified	1435.8333	0.83333937	446	O60763	USO1	General vesicular transport factor p115	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	16	0									3		1	1	1	79.805	71.637	3	0.026891	39768	160513_QHF_FH_JSI10Kac_6	34.898	20.107			0.81531	0.94874	5.5466	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.81531	0.94874	NaN	1	1	Median	1.1027	1.0459	NaN	1	0	Median	0.89185	0.95144	NaN	1	0	Median	224320000	122070000	102250000	0	0	0	176380000	96941000	79443000	17964000	9249600	8714800	29973000	15877000	14097000	56900	446	53597	345475;345476;345477	465845;465846	465846			1	
VTNLLMLK	1	Unmodified	930.55722	0.55722409	1281;724	P26599;O95758	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.69	2	4					1	4	1	2	5	3	2	66.879	61.438	2	0.0016104	53743	160511_QHF_FH_JSI9i_2	87.181	0			1.0297	1.0599	21.979	12	0	Median	1.3312	1.1314	27.295	2	0	Median	0.95298	1.1247	27.319	5	0	Median	1.0199	1.0315	3.3546	3	0	Plateau	0.83933	0.92804	26.777	2	0	Median	5380600000	2658700000	2721800000	906300000	382150000	524150000	1402000000	695150000	706890000	1854100000	904490000	949570000	1218200000	676930000	541220000	56901	1281;724	53598	345478;345479;345480;345481;345482;345483;345484;345485;345486;345487;345488;345489	465847;465848;465849;465850;465851;465852;465853;465854;465855;465856;465857;465858;465859	465852			13	
VTNLSEDTR	0	Unmodified	1033.504	0.50400254	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.375	12.938	2	0.002369	10571	160511_QHF_FH_JSI10i_1	74.376	49.744			2.619	2.4864	18.427	4	4	Median	2.7301	2.2405	NaN	1	1	Median	2.8305	3.3961	NaN	1	1	Median	2.4327	2.3702	NaN	1	1	Median	2.5125	2.6082	NaN	1	1	Median	2407900000	558070000	1849800000	457110000	111940000	345170000	693640000	141170000	552470000	745570000	171050000	574520000	511590000	133910000	377690000	56902	570	53599	345490;345491;345492;345493	465860;465861;465862;465863	465862			4	
VTNLSEDTRETDLQELFRPFGSISR	0	Unmodified	2909.4519	0.45191398	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	2		By MS/MS			2	0		1									1			93.85	93.474	4	0.059611	82805	160511_QHF_FH_JSI10i_2	18.904	16.181			1.2684	1.494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2684	1.494	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16714000	9597100	7117400	0	0	0	16714000	9597100	7117400	0	0	0	0	0	0	56903	570	53600	345494	465864	465864			1	
VTNPNAR	0	Unmodified	770.4035	0.40350064	2037	P62910	RPL32	60S ribosomal protein L32	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.29	6	2	4	2		1	2	3	3		4	4	5	4	5.1981	0.59367	2	0.010846	1734	160513_QHF_FH_JSI11Kac_4	81.864	55.068			0.92406	1.023	16.214	17	0	Median	1.3053	1.0686	7.8131	4	0	Median	0.84558	1.0102	24.865	4	0	Median	1.0467	1.023	19.401	5	0	Median	0.90562	1.0032	2.7134	4	0	Median	18312000000	8863100000	9448800000	4880700000	2054500000	2826200000	2394800000	1282800000	1112000000	8292400000	4073900000	4218500000	2744100000	1451900000	1292200000	56904	2037	53601	345495;345496;345497;345498;345499;345500;345501;345502;345503;345504;345505;345506;345507;345508;345509;345510;345511	465865;465866;465867;465868;465869;465870;465871;465872;465873;465874;465875;465876	465869			12	
VTNQLQYLHK	1	Unmodified	1242.6721	0.67207093	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	30.151	29.679	3	0.0023271	25589	160511_QHF_FH_JSI11i_3	39.785	29.236			1.1722	1.2017	17.043	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1722	1.3026	NaN	1	0	Median	1.0097	0.93919	NaN	1	0	Median	1.1842	1.2017	NaN	1	0	Median	242820000	101280000	141550000	0	0	0	20324000	8014400	12310000	103330000	45228000	58099000	119170000	48036000	71137000	56905	1259	53602	345512;345513;345514	465877;465878	465877			2	
VTNTTPWEHPYPDLPSR	0	Unmodified	2008.9643	0.96428978	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	0			By MS/MS		3	0			1									1		58.093	58.093	3	0.0403	51278	160511_QHF_FH_JSI11i_3	23.33	14.511			0.99558	0.93909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99558	0.93909	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2182100000	1145700000	1036400000	0	0	0	0	0	0	2182100000	1145700000	1036400000	0	0	0	56906	682	53603	345515	465879	465879			1	
VTNVDEEK	1	Unmodified	932.44509	0.44509068	2564	Q14690	PDCD11	Protein RRP5 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	8.0392	7.6791	2	0.031505	5602	160511_QHF_FH_JSI12i_1	49.715	27.584			0.23541	0.24725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23541	0.24725	NaN	1	1	Median	159370000	129800000	29567000	0	0	0	0	0	0	0	0	0	159370000	129800000	29567000	56907	2564	53604	345516	465880	465880			1	
VTNYIFDSLR	0	Unmodified	1226.6295	0.62953741	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			35.671	35.319	2	0.041969	31600	160511_QHF_FH_JSI10i_1	55.531	27.357			0.34777	0.408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.34777	0.408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251920000	180590000	71333000	0	0	0	251920000	180590000	71333000	0	0	0	0	0	0	56908	3699	53605	345517	465881	465881			1	
VTPDIEESLLEPENEK	1	Unmodified	1840.8942	0.89420411	2501	Q14151	SAFB2	Scaffold attachment factor B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	1	2	3	72.646	72.153	2;3	4.9511E-07	65701	160511_QHF_FH_JSI12i_1	131.79	106.5			0.78225	0.82101	20.676	6	1	Median	0.82358	0.66889	NaN	1	0	Median	0.743	0.86833	NaN	1	0	Median	1.0247	0.96185	15.105	2	0	Median	0.65107	0.68331	18.678	2	1	Median	350170000	193910000	156260000	55381000	31170000	24210000	57443000	30729000	26714000	134710000	69734000	64977000	102630000	62279000	40353000	56909	2501	53606	345518;345519;345520;345521;345522;345523;345524	465882;465883;465884;465885;465886;465887;465888;465889;465890;465891;465892	465885			10	
VTPDTDWAR	0	Unmodified	1059.4985	0.49852324	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6.13	4						2			1	2	1	2	37.275	33.542	2	0.00017471	30667	160511_QHF_FH_JSI12i_1	87.181	66.482			0.88726	0.97396	11.277	6	1	Median	1.2021	0.99198	NaN	1	0	Median	0.83249	0.96799	7.9907	2	0	Median	1.2662	1.2333	NaN	1	1	Median	0.87146	0.93245	3.5674	2	0	Median	4111200000	1863100000	2248200000	741390000	267580000	473800000	1200700000	576420000	624240000	1267800000	547890000	719920000	901360000	471160000	430200000	56910	1798	53607	345525;345526;345527;345528;345529;345530	465893;465894;465895;465896;465897;465898;465899;465900;465901;465902	465894			10	
VTPEIPAGLPSPR	0	Unmodified	1332.7402	0.74015049	1521	P41273	TNFSF9	Tumor necrosis factor ligand superfamily member 9	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		64.499	63.753	2	0.0046827	58014	160511_QHF_FH_JSI11i_1	54.486	17.011			0.97156	0.87387	15.07	2	0	Median	1.1813	0.97213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79905	0.78554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	80464000	34842000	45622000	35978000	12658000	23320000	0	0	0	44487000	22185000	22302000	0	0	0	56911	1521	53608	345531;345532	465903;465904;465905	465904			3	
VTPENAGQWKPDELQVLEK	2	Unmodified	2180.1113	0.11134795	400	O60244	MED14	Mediator of RNA polymerase II transcription subunit 14	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	69.801	69.503	3	0.0071326	60150	160511_QHF_FH_JSI12i_3	44.587	28.465			0.96388	0.99087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96388	0.99087	NaN	1	1	Median	57566000	29320000	28246000	0	0	0	0	0	0	0	0	0	57566000	29320000	28246000	56912	400	53609	345533	465906	465906			1	
VTPEPGAGPTQGLLR	0	Unmodified	1491.8045	0.80454166	3386	Q86YP4	GATAD2A	Transcriptional repressor p66-alpha	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		51.211	50.684	2	0.017297	43659	160511_QHF_FH_JSI11i_2	50.354	34.782			0.45069	0.44419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45069	0.44419	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	81011000	48343000	32668000	0	0	0	0	0	0	81011000	48343000	32668000	0	0	0	56913	3386	53610	345534	465907	465907			1	
VTPFILK	1	Unmodified	816.51093	0.51092582	3527	Q8N4H5	TOMM5	Mitochondrial import receptor subunit TOM5 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	58.384	57.377	2	0.013926	50635	160511_QHF_FH_JSI10i_2	67.035	44.412			1.0259	1.1216	23.354	7	0	Median	0.93785	0.77596	16.529	2	0	Median	1.0134	1.2005	9.6122	2	0	Median	1.0857	1.0852	NaN	1	0	Median	1.1609	1.2424	11.956	2	0	Median	1614200000	802460000	811700000	371320000	200830000	170500000	336030000	159770000	176260000	240260000	122670000	117590000	666550000	319190000	347360000	56914	3527	53611	345535;345536;345537;345538;345539;345540;345541	465908;465909;465910;465911;465912;465913;465914;465915;465916;465917;465918	465916			11	
VTPGSGALQGQSVSVWELLFYR	0	Unmodified	2393.2379	0.23794545	1898	P58107	EPPK1	Epiplakin	yes	no	0	0	0	0	By MS/MS		By matching		16	0									2	1		1		96.996	87.74	3	7.1002E-08	50139	160513_QHF_FH_JSI9Kac_6	81.12	58.685			0.84222	0.75512	43.501	2	0	Median	1.2264	1.0271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.57837	0.55517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	239590000	115580000	124010000	130980000	54389000	76590000	0	0	0	108610000	61188000	47421000	0	0	0	56915	1898	53612	345542;345543	465919	465919			1	
VTPNPDLLDLVQTADEK	1	Unmodified	1866.9575	0.95747307	3522	Q8N3V7	SYNPO	Synaptopodin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	1	2		92.859	92.237	2	7.1598E-05	83901	160511_QHF_FH_JSI11i_1	78.763	55.387			0.90207	0.75975	26.632	3	3	Median	1.0434	0.86015	17.554	2	2	Median	NaN	NaN	NaN	0	0	Median	0.58913	0.57192	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35246000	19240000	16007000	19666000	8869500	10797000	0	0	0	15580000	10370000	5209900	0	0	0	56916	3522	53613	345544;345545;345546;345547;345548	465920;465921;465922;465923;465924	465921			5	
VTPPAVTGSPEFER	0	Unmodified	1485.7464	0.74635808	4310	Q99735	MGST2	Microsomal glutathione S-transferase 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		1	2	51.313	50.553	2	0.0012605	45805	160511_QHF_FH_JSI12i_1	61.233	42.626			1.1945	1.0439	2.6603	3	2	Plateau	1.2494	1.0439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0488	1.0362	NaN	1	1	Median	0.95941	0.99364	NaN	1	1	Median	494600000	214370000	280240000	145200000	66589000	78610000	0	0	0	230860000	103460000	127410000	118540000	44319000	74223000	56917	4310	53614	345549;345550;345551;345552	465925;465926;465927;465928	465927			4	
VTPPEGYEVVTVFPK	1	Unmodified	1660.8712	0.87122424	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	10	5								3	5	3	4	79.208	78.643	2;3	5.8663E-05	71720	160511_QHF_FH_JSI12i_1	83.729	65.365			0.9547	0.949	23.534	15	4	Median	0.9547	0.79197	7.4185	3	0	Median	0.74088	0.88267	36.807	5	2	Median	1.06	1.0379	12.528	3	0	Median	1.0069	1.0429	4.6351	4	2	Median	1630600000	841670000	788890000	272150000	152720000	119430000	555010000	301920000	253090000	401100000	193260000	207840000	402300000	193770000	208530000	56918	98	53615	345553;345554;345555;345556;345557;345558;345559;345560;345561;345562;345563;345564;345565;345566;345567	465929;465930;465931;465932;465933;465934;465935;465936;465937;465938;465939;465940;465941;465942;465943;465944;465945;465946;465947;465948;465949;465950;465951;465952	465938			24	
VTPQSDGSSSK	1	Unmodified	1091.5095	0.50948185	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.77	5.37	4		3		3	3				2	4	3	4	5.8987	2.1331	2	1.1074E-05	3176	160511_QHF_FH_JSI11i_1	107.79	71.393			1.0237	1.0535	10.196	12	0	Median	1.2705	1.037	3.3129	2	0	Median	0.96222	1.1494	16.946	3	0	Plateau	1.2075	1.1889	9.6404	3	0	Plateau	0.9896	1.0588	4.4809	4	0	Median	7882000000	3844500000	4037500000	1724200000	803160000	921080000	1971200000	957600000	1013600000	1999400000	984180000	1015200000	2187300000	1099600000	1087700000	56919	1417	53616	345568;345569;345570;345571;345572;345573;345574;345575;345576;345577;345578;345579;345580	465953;465954;465955;465956;465957;465958;465959;465960;465961;465962;465963;465964;465965;465966;465967;465968;465969;465970;465971;465972;465973	465953			21	
VTPQSLFILFGVYGDVQR	0	Unmodified	2038.0888	0.088762013	1281	P26599	PTBP1	Polypyrimidine tract-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.8	4.35		5	5	6	3	3	3	1	60	25	19	28	14	103.25	95.566	2;3	1.231E-44	53619	160513_QHF_FH_JSI10Kac_6	228.19	206.13			1.0281	1.0348	33.577	70	35	Median	1.2128	1.0433	39.442	18	9	Median	0.87319	1.0319	31.666	15	6	Median	1.0324	1.0297	35.324	26	14	Median	1.017	1.0542	21.603	11	6	Median	23180000000	10870000000	12311000000	5160200000	2266200000	2894000000	6035800000	3316100000	2719600000	8531000000	3730000000	4801000000	3453500000	1557300000	1896200000	56920	1281	53617	345581;345582;345583;345584;345585;345586;345587;345588;345589;345590;345591;345592;345593;345594;345595;345596;345597;345598;345599;345600;345601;345602;345603;345604;345605;345606;345607;345608;345609;345610;345611;345612;345613;345614;345615;345616;345617;345618;345619;345620;345621;345622;345623;345624;345625;345626;345627;345628;345629;345630;345631;345632;345633;345634;345635;345636;345637;345638;345639;345640;345641;345642;345643;345644;345645;345646;345647;345648;345649;345650;345651;345652;345653;345654;345655;345656;345657;345658;345659;345660;345661;345662;345663;345664;345665;345666	465974;465975;465976;465977;465978;465979;465980;465981;465982;465983;465984;465985;465986;465987;465988;465989;465990;465991;465992;465993;465994;465995;465996;465997;465998;465999;466000;466001;466002;466003;466004;466005;466006;466007;466008;466009;466010;466011;466012;466013;466014;466015;466016;466017;466018;466019;466020;466021;466022;466023;466024;466025;466026;466027;466028;466029;466030;466031;466032;466033;466034;466035;466036;466037;466038;466039;466040;466041;466042;466043;466044;466045;466046;466047;466048;466049;466050;466051;466052;466053;466054;466055;466056;466057;466058;466059;466060;466061;466062;466063;466064;466065;466066;466067;466068;466069;466070;466071;466072;466073;466074;466075;466076;466077;466078;466079;466080	466070			106	
VTPTANQWDYK	1	Unmodified	1321.6303	0.63026569	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	1		2	40.094	39.356	2	0.006946	33372	160511_QHF_FH_JSI12i_2	52.79	41.96			1	1.0225	54.596	3	2	Median	2.7579	2.2279	NaN	1	0	Median	0.6709	0.77787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1	1.0225	NaN	1	1	Median	210580000	116810000	93763000	20505000	5665300	14840000	101800000	65017000	36786000	0	0	0	88269000	46132000	42137000	56921	2547	53618	345667;345668;345669;345670	466081;466082;466083;466084	466081			4	
VTPTRTEIIILATR	0	Unmodified	1582.9406	0.94064121	1227	P23396	RPS3	40S ribosomal protein S3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	70.093	61.196	3	0.0011552	33388	160513_QHF_FH_JSI10Kac_6	49.482	44.328			1.2762	1.2877	10.668	4	0	Median	1.4749	1.2369	NaN	1	0	Median	1.1194	1.3406	NaN	1	0	Median	1.455	1.4152	NaN	1	0	Median	1.0368	1.1073	NaN	1	0	Median	879140000	381100000	498040000	174050000	71552000	102500000	440580000	182230000	258350000	98456000	42784000	55671000	166050000	84526000	81519000	56922	1227	53619	345671;345672;345673;345674	466085;466086;466087;466088	466088			4	
VTPVDYLLGVADLTGELMR	0	Unmodified	2061.0816	0.081627724	4292	Q99598	TSNAX	Translin-associated protein X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	0.3		9	1							3	2	2	3	104.01	103.93	2;3	1.2296E-24	91648	160511_QHF_FH_JSI11i_2	179.56	158.01			1.0281	1.0612	19.221	9	4	Median	0.93055	0.78593	18.791	3	2	Median	0.72116	0.89411	24.233	2	1	Median	1.1271	1.124	12.252	2	1	Median	1.0319	1.1399	1.9932	2	0	Median	360290000	183530000	176750000	92159000	51840000	40319000	30848000	19202000	11647000	157550000	77483000	80063000	79733000	35008000	44726000	56923	4292	53620	345675;345676;345677;345678;345679;345680;345681;345682;345683;345684	466089;466090;466091;466092;466093;466094;466095;466096;466097	466093			9	
VTPVEVMPVFPDFK	1	Unmodified	1603.832	0.83200197	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.43	0.495	4	3								2	2	1	2	100.99	100.88	3	9.4211E-05	88670	160511_QHF_FH_JSI9i_2	75.462	67.679			0.9276	0.91822	13.764	7	0	Median	1.1114	0.95106	23.66	2	0	Median	0.74409	0.87909	6.1589	2	0	Median	1.0387	0.98818	NaN	1	0	Median	0.85823	0.89991	20.362	2	0	Median	203950000	110760000	93193000	49578000	23573000	26005000	66947000	41388000	25559000	25316000	11628000	13689000	62108000	34168000	27940000	56924	3563	53621	345685;345686;345687;345688;345689;345690;345691	466098;466099;466100;466101	466100			3	
VTPVLYLNYGPYSSYAPHYDSTFANISK	1	Unmodified	3166.5288	0.52876732	4903	Q9NPI1	BRD7	Bromodomain-containing protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									1	2	99.294	99.22	3	3.2442E-06	88266	160511_QHF_FH_JSI11i_3	54.605	48.9			1.6054	1.724	49.688	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7713	2.5349	NaN	1	1	Median	1.1935	1.2769	42.461	2	2	Median	125650000	50015000	75630000	0	0	0	0	0	0	70247000	21400000	48847000	55398000	28614000	26784000	56925	4903	53622	345692;345693;345694	466102;466103;466104;466105	466102			4	
VTQALNVLTTTFGR	0	Unmodified	1519.8358	0.83584179	3127	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			80.416	79.71	2	0.016218	70977	160511_QHF_FH_JSI10i_2	52.391	35.759			0.66868	0.85986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66868	0.85986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12607000	8518400	4088900	0	0	0	12607000	8518400	4088900	0	0	0	0	0	0	56926	3127	53623	345695;345696	466106;466107	466107			2	
VTQDATPGSALDK	1	Unmodified	1301.6463	0.64630969	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	23.944	23.397	2	0.00010642	20648	160511_QHF_FH_JSI12i_1	91.937	68.509			0.97566	0.97852	7.78	4	0	Median	1.3515	1.1106	NaN	1	0	Median	0.7902	0.93139	NaN	1	0	Median	0.96333	0.95501	NaN	1	0	Median	0.98815	1.0026	NaN	1	0	Median	512370000	252530000	259840000	109530000	42698000	66834000	113380000	61874000	51504000	111710000	52812000	58895000	177750000	95143000	82610000	56927	2170	53624	345697;345698;345699;345700	466108;466109;466110;466111;466112;466113;466114;466115	466111			8	
VTQDELK	1	Unmodified	831.4338	0.43379771	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	5.92	4	1			1	3	1			1	2	4	3	14.766	10.935	2	0.025424	7340	160513_QHF_FH_JSI11Kac_3	65.252	26.46			0.95011	0.97095	19.54	10	0	Median	1.4717	1.2558	NaN	1	0	Median	1.0236	1.2312	43.885	2	0	Median	1.013	0.97646	7.2578	4	0	Median	0.83975	0.88741	5.6787	3	0	Plateau	15373000000	7332300000	8040700000	3868900000	1703200000	2165700000	3426500000	1596000000	1830500000	4287200000	1980100000	2307100000	3790400000	2053000000	1737400000	56928	1154	53625	345701;345702;345703;345704;345705;345706;345707;345708;345709;345710	466116;466117;466118;466119;466120;466121;466122	466118			7	
VTQEIVTER	0	Unmodified	1073.5717	0.57168818	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		22.356	21.816	2	0.0041879	18822	160511_QHF_FH_JSI11i_1	68.016	34.374			0.1776	0.16833	19.281	3	3	Plateau	0.1776	0.14474	NaN	1	1	Median	0.16609	0.19576	NaN	1	1	Median	0.21449	0.20719	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1783000000	1515800000	267150000	617220000	524710000	92511000	536320000	445760000	90562000	629410000	545330000	84082000	0	0	0	56929	2493	53626	345711;345712;345713	466123;466124;466125	466123			3	
VTQKSYK	2	Acetyl (K)	894.48108	0.48108226	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1		By MS/MS			13	0						1					1			14.043	6.6117	2	0.038051	5618	160513_QHF_FH_JSI10Kac_3	65.252	26.46		+	0.90127	1.0807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90127	1.0807	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34752000	18336000	16416000	0	0	0	34752000	18336000	16416000	0	0	0	0	0	0	56930	51	53627	345714	466126	466126	29		1	
VTQLASYFEPLILAAVGVASK	1	Unmodified	2176.2144	0.21435646	5628	Q9Y4G6	TLN2	Talin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	103.78	103.79	3	1.138E-18	90526	160511_QHF_FH_JSI12i_3	152.81	138.2			1.0977	1.061	3.7948	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1143	1.0329	NaN	1	0	Median	1.0813	1.0898	NaN	1	0	Median	69644000	33515000	36129000	0	0	0	0	0	0	13460000	6531900	6928100	56184000	26983000	29200000	56931	5628	53628	345715;345716	466127;466128;466129;466130	466130			4	
VTQLDLDGPK	1	Unmodified	1084.5764	0.57643921	2415	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.573	37.954	2	0.0001284	34577	160511_QHF_FH_JSI12i_1	98.044	67.877			0.91569	0.88136	11.601	4	4	Median	0.9553	0.79444	NaN	1	1	Median	0.87772	1.0194	NaN	1	1	Median	0.96189	0.94199	NaN	1	1	Median	0.78829	0.82462	NaN	1	1	Median	1055000000	633450000	421590000	163020000	94288000	68734000	308520000	194540000	113990000	346210000	199230000	146980000	237290000	145400000	91889000	56932	2415	53629	345717;345718;345719;345720	466131;466132;466133;466134	466132			4	
VTQLDPKEEEVSLQGINTR	1	Unmodified	2155.1121	0.11207623	5750	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	yes	yes	0	0	0	1	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	59.24	58.3	3	0.033315	50013	160511_QHF_FH_JSI12i_2	28.65	20.26			1.2658	1.0432	33.882	3	1	Median	1.2658	1.0432	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4995	1.5137	NaN	1	1	Median	0.71126	0.76952	NaN	1	0	Median	80119000	36780000	43339000	26074000	12012000	14062000	0	0	0	28394000	10719000	17675000	25651000	14049000	11602000	56933	5750	53630	345721;345722;345723	466135;466136	466135			2	
VTQNLPMK	1	Unmodified	929.50044	0.50043749	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	23.478	22.852	2	0.019342	19750	160511_QHF_FH_JSI11i_1	46.835	22.016			2.5112	2.0683	27.6	3	0	Median	2.5112	2.0683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.6492	1.5986	NaN	1	0	Median	2.6479	2.7753	NaN	1	0	Median	402590000	150200000	252390000	111860000	43422000	68441000	0	0	0	166990000	63391000	103590000	123740000	43387000	80356000	56934	2785	53631	345724;345725;345726	466137;466138	466137			2	
VTQQDVKK	2	Unmodified	944.5291	0.52909508	1426	P35241	RDX	Radixin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		5.9569	5.6103	2	0.0079912	3481	160511_QHF_FH_JSI11i_2	58.23	6.3755			1.2377	1.1344	22.283	3	2	Median	1.2942	1.1344	NaN	1	1	Median	0.6689	0.81761	NaN	1	1	Median	1.2377	1.2512	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	139730000	70849000	68886000	45824000	20387000	25436000	32285000	21669000	10617000	61626000	28793000	32833000	0	0	0	56935	1426	53632	345727;345728;345729	466139;466140;466141;466142	466141			4	
VTQQGLK	1	Unmodified	772.4443	0.44430282	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.64	5.96	4	4				3	3			2	4	4	4	9.2097	5.6315	2	0.010327	5877	160511_QHF_FH_JSI12i_1	75.311	18.8			0.91494	0.97679	25.409	14	1	Median	1.2597	1.0443	1.9979	2	0	Median	0.92902	1.1308	39.418	4	1	Median	0.9341	0.91681	12.721	4	0	Median	0.67451	0.73575	17.76	4	0	Median	10690000000	5441300000	5248300000	2285200000	945620000	1339600000	2845800000	1458500000	1387300000	2900400000	1484800000	1415600000	2658300000	1552400000	1105900000	56936	1650	53633	345730;345731;345732;345733;345734;345735;345736;345737;345738;345739;345740;345741;345742;345743	466143;466144;466145;466146;466147;466148;466149;466150;466151;466152;466153;466154;466155;466156;466157	466145			15	
VTQSAYAQIVQFGMNEK	1	Unmodified	1912.9353	0.93529784	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.75	0.829	2	1	1							1	1		2	77.151	76.719	2;3	1.4532E-05	69620	160511_QHF_FH_JSI10i_1	68.567	62.663			0.87006	0.89689	30.841	4	2	Median	1.1897	1.0489	NaN	1	1	Median	0.63629	0.76688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88757	0.90723	48.597	2	1	Median	163990000	83779000	80212000	28054000	16109000	11945000	65056000	38461000	26595000	0	0	0	70881000	29209000	41672000	56937	5640	53634	345744;345745;345746;345747	466158;466159;466160;466161	466159			4	
VTQSAYAQIVQFGMNEK	1	Oxidation (M)	1928.9302	0.93021246	5640	Q9Y4W6	AFG3L2	AFG3-like protein 2	yes	yes	0	0	1	0			By MS/MS		15	0								1				1		75.862	65.197	3	0.00030281	34702	160513_QHF_FH_JSI11Kac_5	66.335	51.413			0.87671	0.86647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87671	0.86647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5627000	3426800	2200200	0	0	0	0	0	0	5627000	3426800	2200200	0	0	0	56938	5640	53634	345748	466162	466162		2720	1	
VTQSDLYK	1	Unmodified	952.48656	0.48656157	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	21.49	21.174	2	0.017274	18319	160511_QHF_FH_JSI11i_1	46.994	19.857			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56939	329	53635	345749;345750	466163;466164	466163			2	
VTQSDLYKK	2	Acetyl (K)	1122.5921	0.59208927	329	O43399	TPD52L2	Tumor protein D54	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		35.621	26.734	2	0.021031	15767	160513_QHF_FH_JSI11Kac_3	78.334	43.039			0.30044	0.30004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30044	0.30004	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	5385700	4133900	1251800	0	0	0	0	0	0	5385700	4133900	1251800	0	0	0	56940	329	53636	345751	466165	466165	170		1	
VTQSNFAVGYK	1	Unmodified	1212.6139	0.61388734	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.15	6.41	4	4	2			2	3	3	2	4	7	5	4	41.148	35.814	2	2.7738E-09	31492	160511_QHF_FH_JSI10i_2	149.72	137.87			0.9404	0.96622	7.8602	20	1	Median	1.144	0.95759	1.2995	4	0	Median	0.82119	0.99376	9.0888	7	1	Median	0.97082	0.93177	6.6011	5	0	Median	0.92796	1.0008	8.7718	4	0	Median	8233600000	4152900000	4080600000	1423500000	600430000	823030000	2034400000	1080400000	953990000	2668700000	1305200000	1363600000	2107000000	1166900000	940060000	56941	1195	53637	345752;345753;345754;345755;345756;345757;345758;345759;345760;345761;345762;345763;345764;345765;345766;345767;345768;345769;345770;345771	466166;466167;466168;466169;466170;466171;466172;466173;466174;466175;466176;466177;466178;466179;466180;466181;466182;466183;466184;466185;466186;466187;466188;466189;466190;466191;466192;466193;466194;466195;466196;466197;466198;466199;466200;466201;466202;466203	466199			38	
VTQVDGHSSK	1	Unmodified	1056.52	0.51998696	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.79	3	9					6			3	5	5	5	5.3273	2.158	2;3	2.6077E-09	2630	160511_QHF_FH_JSI11i_2	128.03	91.334			0.92939	0.96423	22.748	17	5	Median	1.5542	1.3204	26.272	2	1	Median	0.77389	0.96423	28.221	5	2	Median	0.92939	0.95463	20.009	5	1	Median	0.87006	0.94677	8.414	5	1	Median	3296800000	1579400000	1717400000	712460000	277920000	434550000	764840000	427050000	337790000	952920000	463770000	489150000	866560000	410640000	455920000	56942	323	53638	345772;345773;345774;345775;345776;345777;345778;345779;345780;345781;345782;345783;345784;345785;345786;345787;345788;345789	466204;466205;466206;466207;466208;466209;466210;466211;466212;466213;466214;466215;466216;466217;466218;466219;466220;466221;466222;466223;466224;466225;466226;466227;466228;466229;466230;466231	466220			28	
VTQVDGNSPVR	0	Unmodified	1170.5993	0.59929991	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.88	5.86	2	1				3	2			2	1	2	3	21.244	16.631	2	0.00016793	14012	160511_QHF_FH_JSI9i_1	92.538	74.912			1.28	1.2617	23.485	7	2	Median	1.5316	1.2617	NaN	1	1	Median	0.62732	0.77784	NaN	1	1	Median	1.2424	1.2149	26.101	2	0	Median	1.3415	1.4243	19.885	3	0	Plateau	1470800000	589680000	881130000	781400000	311760000	469640000	19274000	10435000	8838300	18459000	9651900	8807000	651670000	257830000	393840000	56943	1620	53639	345790;345791;345792;345793;345794;345795;345796;345797	466232;466233;466234;466235;466236;466237;466238;466239;466240;466241	466238			10	
VTQVENEEK	1	Unmodified	1074.5193	0.51931826	170	O14524	TMEM194A	Transmembrane protein 194A	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		8.2569	8.1398	2	0.0018761	5855	160511_QHF_FH_JSI11i_1	76.1	48.275			1.3848	1.3497	64.628	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3848	1.3497	64.628	2	2	Median	NaN	NaN	NaN	0	0	Median	173450000	69622000	103830000	0	0	0	0	0	0	173450000	69622000	103830000	0	0	0	56944	170	53640	345798;345799	466242;466243	466243			2	
VTQWAEER	0	Unmodified	1017.488	0.48795855	4659	Q9H1H9	KIF13A	Kinesin-like protein KIF13A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		8.3149	8.3149	3	0.050412	6024	160511_QHF_FH_JSI11i_3	15.151	2.9147			1.2149	1.1344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2149	1.1344	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117190000	52407000	64784000	0	0	0	0	0	0	117190000	52407000	64784000	0	0	0	56945	4659	53641	345800	466244	466244			1	
VTRADVDVQPYAFTTK	1	Unmodified	1809.9261	0.92611336	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		52.112	52.112	3	0.017314	46024	160511_QHF_FH_JSI11i_3	43.454	29.799			0.092858	0.086371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.092858	0.086371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	100460000	75704000	24753000	0	0	0	0	0	0	100460000	75704000	24753000	0	0	0	56946	4559	53642	345801	466245	466245			1	
VTRPDSGHLYAMK	1	Unmodified	1473.7398	0.73983292	2669	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	1	2		25.946	25.146	3;4	0.0015032	20996	160511_QHF_FH_JSI10i_3	55.724	42.957			0.8191	0.91348	171.12	5	2	Median	6.0825	4.903	284.78	2	1	Median	0.79761	0.91348	NaN	1	0	Median	1.9018	1.777	121.34	2	1	Median	NaN	NaN	NaN	0	0	Median	817470000	215240000	602230000	458260000	63892000	394370000	59590000	34715000	24876000	299620000	116640000	182990000	0	0	0	56947	2669	53643	345802;345803;345804;345805;345806	466246;466247;466248;466249;466250	466248			5	
VTRPQELDLTHQGQPITEEEQAAK	1	Unmodified	2717.362	0.36203634	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.57	0.495		3	4							3	3	1		48.302	47.185	3;4	1.5775E-11	39352	160511_QHF_FH_JSI10i_3	97.509	90.063			0.91656	1.0452	16.05	7	4	Median	1.2149	1.0452	19.314	3	3	Median	0.89748	1.0569	16.201	3	0	Median	0.89768	0.81373	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	280120000	141820000	138300000	106930000	48845000	58086000	125790000	68538000	57248000	47408000	24441000	22967000	0	0	0	56948	3200	53644	345807;345808;345809;345810;345811;345812;345813	466251;466252;466253;466254;466255;466256;466257;466258;466259;466260;466261;466262	466253			12	
VTRPQELDLTHQGQPITEEEQAAKLK	2	Acetyl (K)	3000.5516	0.55162802	3200	Q70E73	RAPH1	Ras-associated and pleckstrin homology domains-containing protein 1	yes	yes	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	69.02	59.333	4	0.0029907	32197	160513_QHF_FH_JSI11Kac_6	58.627	47.624			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20570000	11669000	8900700	0	0	0	0	0	0	11669000	11669000	0	8900700	0	8900700	56949	3200	53645	345814;345815	466263;466264	466263	2794		2	
VTSAHKGPDETLR	1	Acetyl (K)	1451.7369	0.73685603	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.703							4	7	3	2	5	3	4	26.795	17.915	2;3	4.5454E-06	11345	160513_QHF_FH_JSI11Kac_5	104.24	90.475			0.85241	0.94961	33.992	14	0	Median	1.1774	1.0031	7.2028	2	0	Median	0.97706	1.1487	10.063	5	0	Median	0.51596	0.50847	13.832	3	0	Median	0.83921	0.92487	5.0127	4	0	Median	360200000	210810000	149380000	39595000	17909000	21685000	78922000	42238000	36684000	151830000	103870000	47961000	89847000	46794000	43053000	56950	1206	53646	345816;345817;345818;345819;345820;345821;345822;345823;345824;345825;345826;345827;345828;345829	466265;466266;466267;466268;466269;466270;466271;466272;466273;466274;466275;466276	466273	1078		12	
VTSAQKHVLHVQLNRPNK	2	Acetyl (K)	2110.176	0.17595431	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			42.345	33.727	4	0.040672	18756	160513_QHF_FH_JSI10Kac_6	32.091	27.09			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4133700	0	4133700	0	0	0	4133700	0	4133700	0	0	0	0	0	0	56951	2340	53647	345830	466277	466277			1	
VTSAVEALLSADSASR	0	Unmodified	1575.8104	0.8104149	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		4	2					1		1	1	3	2	73.992	71.939	2	5.16E-11	62962	160511_QHF_FH_JSI12i_3	183.79	170.19			0.9926	0.97604	12.06	7	1	Median	1.2468	1.0983	NaN	1	0	Median	0.77061	0.92834	NaN	1	0	Median	0.9926	0.97604	15.186	3	1	Median	0.92757	0.99783	16.375	2	0	Median	733400000	359500000	373900000	100370000	51688000	48681000	146040000	77095000	68945000	261510000	120010000	141500000	225480000	110710000	114770000	56952	1573	53648	345831;345832;345833;345834;345835;345836;345837	466278;466279;466280;466281;466282;466283;466284;466285;466286;466287;466288;466289	466289			12	
VTSEELHYFVQNHFTSAR	0	Unmodified	2164.0338	0.033766329	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.84	4.85		4	12						3	6	8	2	3	67.936	65.683	3;4	2.9068E-33	35651	160513_QHF_FH_JSI10Kac_6	161.95	146.06			0.96081	0.98556	26.755	18	2	Median	1.2363	1.0376	26.255	5	1	Median	0.83761	1.0055	32.524	8	1	Median	0.96081	0.92491	5.1767	2	0	Median	0.89111	0.93916	11.096	3	0	Median	4041000000	2002900000	2038100000	893380000	369150000	524230000	1803900000	934490000	869360000	820350000	412380000	407970000	523460000	286930000	236530000	56953	1216	53649	345838;345839;345840;345841;345842;345843;345844;345845;345846;345847;345848;345849;345850;345851;345852;345853;345854;345855;345856	466290;466291;466292;466293;466294;466295;466296;466297;466298;466299;466300;466301;466302;466303;466304;466305;466306;466307;466308;466309;466310;466311;466312;466313;466314;466315;466316;466317;466318;466319;466320;466321;466322;466323	466323			34	
VTSEGAGLQLQK	1	Unmodified	1229.6616	0.66156582	965	P10253	GAA	Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				32.773	31.508	2	0.020696	27521	160511_QHF_FH_JSI9i_1	49.472	33.507			0.32099	0.26563	NaN	1	1	Median	0.32099	0.26563	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53695000	37130000	16566000	53695000	37130000	16566000	0	0	0	0	0	0	0	0	0	56954	965	53650	345857	466324	466324			1	
VTSFASNLHTDNLNAK	1	Unmodified	1730.8588	0.85876208	478	O75128	COBL	Protein cordon-bleu	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	42.254	42.106	2;3	7.2354E-06	37068	160511_QHF_FH_JSI11i_3	99.451	89.254			1.0186	0.99426	11.243	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1563	1.0765	NaN	1	0	Median	0.89727	0.91828	NaN	1	0	Median	355720000	175640000	180080000	0	0	0	0	0	0	147730000	65106000	82622000	207990000	110530000	97461000	56955	478	53651	345858;345859;345860	466325;466326;466327;466328;466329	466325			5	
VTSLGKDWHRPCLK	2	Acetyl (K)	1737.8985	0.89845882	1700	P50238	CRIP1	Cysteine-rich protein 1	yes	yes	1	0	0	2	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	53.921	44.562	3;4	0.00036858	24401	160513_QHF_FH_JSI10Kac_6	82.651	66.158			0.94836	0.98162	92.553	7	1	Median	1.1528	0.98162	NaN	1	0	Median	1.1187	1.326	10.154	2	0	Median	0.19549	0.18533	73.674	2	1	Median	0.85622	0.91738	11.505	2	0	Median	296560000	173720000	122840000	25723000	11412000	14312000	173420000	91870000	81550000	46766000	40933000	5832800	50652000	29510000	21142000	56956	1700	53652	345861;345862;345863;345864;345865;345866;345867	466330;466331;466332;466333;466334;466335;466336	466335	1714		7	
VTSLPDNHK	1	Unmodified	1009.5193	0.51925868	3797	Q8WWC4	C2orf47	Uncharacterized protein C2orf47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	10.064	9.614	3	0.0014156	7093	160511_QHF_FH_JSI11i_2	55.064	33.378			1.3649	1.5178	22.634	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81188	0.97348	NaN	1	0	Median	1.2547	1.3111	NaN	1	0	Median	1.3649	1.5178	NaN	1	0	Median	240980000	123220000	117760000	0	0	0	74636000	40466000	34170000	77852000	40560000	37292000	88489000	42191000	46298000	56957	3797	53653	345868;345869;345870;345871	466337;466338	466338			2	
VTSMSTQTK	1	Unmodified	981.4801	0.48009598	5480	Q9UQN3	CHMP2B	Charged multivesicular body protein 2b	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	8.5536	8.1268	2	0.0087069	6062	160511_QHF_FH_JSI12i_1	51.949	20.015			1.1643	1.0398	18.93	3	1	Plateau	1.1048	0.92014	NaN	1	0	Median	0.6954	0.80953	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1643	1.175	NaN	1	0	Median	386480000	195090000	191400000	117190000	59743000	57447000	139150000	68303000	70845000	0	0	0	130150000	67042000	63105000	56958	5480	53654	345872;345873;345874	466339;466340	466339			2	
VTSQQFEAEAADEK	1	Unmodified	1551.7053	0.70528113	3121	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	yes	yes	0	0	0	0			By MS/MS		1	0	2											2		36.154	35.9	2	0.0021261	32216	160511_QHF_FH_JSI11i_1	72.496	62.264			0.45337	0.43203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45337	0.43203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	46883000	32280000	14602000	0	0	0	0	0	0	46883000	32280000	14602000	0	0	0	56959	3121	53655	345875;345876	466341;466342	466341			2	
VTSQVLGLGINGK	1	Unmodified	1284.7402	0.74015049	1643	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	57.538	56.612	2	0.0049459	49056	160511_QHF_FH_JSI11i_2	54.198	36.333			1.0019	1.0489	12.32	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95986	0.96143	NaN	1	0	Median	1.0458	1.1444	NaN	1	0	Median	47610000	24520000	23090000	0	0	0	0	0	0	25355000	13350000	12004000	22255000	11169000	11086000	56960	1643	53656	345877;345878	466343	466343			1	
VTSSEPPNPASSSK	1	Unmodified	1386.6627	0.66268803	3848	Q92575	UBXN4	UBX domain-containing protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	16.107	15.524	2	0.00029238	13205	160511_QHF_FH_JSI10i_1	103.08	88.41			1.1925	0.93711	13.607	3	3	Plateau	1.2607	1.0308	NaN	1	1	Median	0.78711	0.92741	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1925	1.2149	NaN	1	1	Median	242120000	120420000	121700000	90643000	40782000	49862000	68304000	42470000	25834000	0	0	0	83177000	37169000	46008000	56961	3848	53657	345879;345880;345881	466344;466345;466346;466347	466346			4	
VTSTNNMAYNK	1	Unmodified	1241.571	0.57103625	4108	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.77	14.316	2	6.1798E-10	11702	160511_QHF_FH_JSI11i_1	138.4	117.88			0.88257	0.86717	21.553	4	0	Median	0.99242	0.80285	NaN	1	0	Median	0.78488	0.93663	NaN	1	0	Median	1.1057	1.08	NaN	1	0	Median	0.64543	0.65315	NaN	1	0	Median	771560000	398520000	373040000	180630000	67922000	112700000	187020000	96672000	90347000	221160000	113860000	107300000	182760000	120070000	62686000	56962	4108	53658	345882;345883;345884;345885	466348;466349;466350;466351;466352;466353;466354	466348			7	
VTSTQQQTR	0	Unmodified	1047.5309	0.530886	1640	P49023	PXN	Paxillin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	4.6979	4.3839	2	0.00011924	2261	160511_QHF_FH_JSI11i_1	92.051	77.382			1.0685	1.0815	16.531	4	0	Median	1.402	1.1458	NaN	1	0	Median	1.0659	1.2438	NaN	1	0	Median	1.0712	1.0209	NaN	1	0	Median	0.79201	0.84939	NaN	1	0	Median	955160000	476270000	478890000	104200000	43544000	60652000	246660000	134310000	112350000	323860000	147380000	176480000	280440000	151040000	129400000	56963	1640	53659	345886;345887;345888;345889	466355;466356;466357	466355			3	
VTSVVFHPSQDLVFSASPDATIR	0	Unmodified	2472.2649	0.26488848	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	82.262	81.612	3	3.3503E-59	72576	160511_QHF_FH_JSI10i_2	212.36	190.14			1.112	1.2201	15.16	7	0	Median	1.4069	1.2201	NaN	1	0	Median	1.2067	1.4473	7.3003	2	0	Median	1.1985	1.1954	14.991	2	0	Median	0.99296	1.0639	11.623	2	0	Median	2135700000	1036600000	1099200000	270350000	120770000	149590000	401840000	189460000	212380000	722240000	363560000	358680000	741310000	362800000	378510000	56964	5426	53660	345890;345891;345892;345893;345894;345895;345896	466358;466359;466360;466361;466362;466363;466364;466365;466366;466367;466368;466369;466370;466371;466372;466373	466370			16	
VTSVVVDVVPR	0	Unmodified	1168.6816	0.68157298	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	57.861	56.806	2	3.6132E-07	48747	160511_QHF_FH_JSI12i_2	118.71	101.33			1.1158	0.98643	13.26	5	0	Median	1.123	0.95957	3.9037	2	0	Median	0.66972	0.81227	NaN	1	0	Median	1.1451	1.1642	NaN	1	0	Median	0.91795	1.0353	NaN	1	0	Median	323850000	180060000	143790000	70263000	32914000	37348000	55324000	33290000	22034000	84587000	46202000	38384000	113680000	67657000	46022000	56965	1040	53661	345897;345898;345899;345900;345901	466374;466375;466376;466377;466378;466379	466375			6	
VTSWVLNTFLGYLK	1	Unmodified	1639.8974	0.89737941	577	O75879	GATB	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	97.773	89.689	2;3	1.0835E-24	50662	160513_QHF_FH_JSI11Kac_6	125.61	112.78			0.99154	0.98749	21.307	6	0	Median	1.2365	1.0595	1.1691	2	0	Median	0.7752	0.91295	2.3099	2	0	Median	1.4956	1.4642	NaN	1	0	Median	0.73603	0.78514	NaN	1	0	Median	826570000	409230000	417340000	312760000	135800000	176950000	380750000	210750000	170010000	88840000	36838000	52002000	44223000	25841000	18381000	56966	577	53662	345902;345903;345904;345905;345906;345907	466380;466381;466382;466383;466384;466385;466386	466381			7	
VTSYIINNLQPDTTYR	0	Unmodified	1896.9581	0.95814177	5520	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.33	0.471		2	1							1		2		68.012	67.517	2	4.839E-11	59998	160511_QHF_FH_JSI11i_3	130.1	107.18			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56967	5520	53663	345908;345909;345910	466387;466388;466389	466387			3	
VTTAAAAAATSQDPEQHLTELREPAPGTNQR	0	Unmodified	3230.5916	0.59159536	5261	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.5	0.5		2	2							2	1	1		53.737	52.563	3;4	2.5042E-58	46131	160511_QHF_FH_JSI9i_2	188.97	183.31			1.2017	1.1019	17.229	4	1	Median	1.5316	1.2536	26.359	2	0	Median	0.9148	1.0605	NaN	1	1	Median	1.1383	1.1449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	583220000	256170000	327040000	501420000	212130000	289300000	12804000	9085500	3718600	68988000	34959000	34029000	0	0	0	56968	5261	53664	345911;345912;345913;345914	466390;466391;466392;466393;466394;466395;466396	466394			7	
VTTADPYASGK	1	Unmodified	1108.5401	0.5400537	1656	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	18.378	17.76	2	8.0088E-08	15370	160511_QHF_FH_JSI12i_1	125.48	109.28			1.1634	1.0862	16.68	3	1	Plateau	1.1634	0.96104	NaN	1	0	Median	1.1163	1.3217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1695	1.2276	NaN	1	0	Median	517210000	241150000	276060000	154050000	77694000	76355000	217110000	88558000	128550000	0	0	0	146060000	74902000	71154000	56969	1656	53665	345915;345916;345917	466397;466398;466399;466400;466401	466398			5	
VTTEDPAR	0	Unmodified	887.43486	0.43486035	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	8.7437	8.3546	2	0.02123	5859	160511_QHF_FH_JSI9i_1	45.081	29.642			0.86255	0.70017	9.0763	3	0	Plateau	0.86255	0.70017	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61405	0.59662	NaN	1	0	Median	0.65281	0.6961	NaN	1	0	Median	1110300000	659260000	451030000	424590000	231330000	193260000	0	0	0	338900000	210710000	128190000	346800000	217230000	129570000	56970	1002	53666	345918;345919;345920	466402;466403;466404	466403			3	
VTTEIQLPSQSPVEEQSPASLSSLR	0	Unmodified	2682.3712	0.37120404	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	81.747	81.301	2;3	3.1156E-09	74093	160511_QHF_FH_JSI11i_1	122.31	108.08			1.1304	1.0109	16.035	5	2	Median	1.2334	1.0109	NaN	1	0	Median	0.73931	0.87599	NaN	1	0	Median	1.2181	1.1765	9.2637	2	1	Median	0.8296	0.85576	NaN	1	1	Median	371750000	194190000	177560000	58428000	33620000	24808000	94969000	56905000	38065000	153620000	64482000	89138000	64736000	39183000	25553000	56971	3799	53667	345921;345922;345923;345924;345925	466405;466406;466407;466408;466409;466410;466411;466412	466407			8	
VTTEQYQK	1	Unmodified	995.49238	0.49237523	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	3	1	11.115	8.7675	2	0.013939	7397	160511_QHF_FH_JSI10i_1	51.854	38.647			1.0583	1.1452	15.868	7	3	Median	1.6651	1.3678	NaN	1	0	Median	1.0213	1.2095	7.726	2	0	Median	1.1057	1.094	23.653	3	2	Median	1.0237	1.063	NaN	1	1	Median	2698800000	1441700000	1257100000	459840000	226540000	233300000	669540000	392760000	276780000	1083400000	594730000	488680000	486020000	227670000	258340000	56972	5098	53668	345926;345927;345928;345929;345930;345931;345932	466413;466414;466415;466416;466417;466418	466416			6	
VTTFEHQYVSAIK	1	Unmodified	1521.7827	0.78274359	1330	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.8	5.6		4							1	2	1	2		46.159	43.711	2;3	1.425E-07	38498	160511_QHF_FH_JSI10i_2	113.76	100.35			1.1398	1.1341	22.568	5	1	Median	1.4229	1.2093	34.114	2	1	Median	0.77096	0.94059	NaN	1	0	Median	1.2433	1.2675	15.726	2	0	Median	NaN	NaN	NaN	0	0	Median	488140000	222490000	265650000	110540000	44771000	65764000	125790000	64950000	60836000	251820000	112770000	139050000	0	0	0	56973	1330	53669	345933;345934;345935;345936;345937	466419;466420;466421;466422	466421			4	
VTTGSVPVSMATVIIHIPQYTK	1	Unmodified	2341.2716	0.27155376	1114	P17301	ITGA2	Integrin alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	99.51	99.517	3	5.491E-06	88674	160511_QHF_FH_JSI11i_3	81.665	73.065			1.3056	1.3229	24.581	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4995	1.3796	34.593	2	2	Median	1.3056	1.3229	NaN	1	0	Median	93242000	45409000	47833000	0	0	0	0	0	0	41988000	21494000	20494000	51255000	23916000	27339000	56974	1114	53670	345938;345939;345940	466423;466424;466425;466426;466427	466424			5	
VTTGTSNTTAIK	1	Unmodified	1192.6299	0.62993134	2651	Q15291	RBBP5	Retinoblastoma-binding protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	15.195	14.737	2	0.00033149	12054	160511_QHF_FH_JSI9i_1	72.2	44.026			0.76502	0.83085	20.613	4	0	Median	1.371	1.1351	NaN	1	0	Median	0.66869	0.80393	NaN	1	0	Median	0.70675	0.69414	NaN	1	0	Median	0.82809	0.85867	NaN	1	0	Median	468270000	265450000	202820000	119980000	45152000	74827000	125670000	84279000	41390000	103840000	63160000	40682000	118780000	72858000	45921000	56975	2651	53671	345941;345942;345943;345944	466428;466429;466430	466430			3	
VTTHPLAK	1	Unmodified	865.50215	0.50215205	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.51		8	7					1	8	6	6	6	6	10.566	7.4008	2;3	0.0030694	6963	160511_QHF_FH_JSI10i_2	52.716	43.944			0.86736	0.92131	24.899	24	0	Median	1.0588	0.92131	24.986	6	0	Median	0.85522	1.0187	14.014	6	0	Median	0.92124	0.90289	19.137	6	0	Median	0.65022	0.69121	25.734	6	0	Median	29353000000	13676000000	15676000000	3398200000	1624700000	1773500000	5437400000	2607300000	2830100000	9767700000	4253000000	5514700000	10749000000	5191400000	5557900000	56976	4276	53672	345945;345946;345947;345948;345949;345950;345951;345952;345953;345954;345955;345956;345957;345958;345959;345960;345961;345962;345963;345964;345965;345966;345967;345968	466431;466432;466433;466434;466435;466436;466437;466438;466439;466440;466441;466442;466443;466444;466445;466446;466447;466448;466449;466450;466451;466452;466453;466454;466455;466456;466457;466458;466459;466460	466449			30	
VTTHPLAKDK	2	Acetyl (K)	1150.6346	0.63462279	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.667							1	4	4	2	3	2	2	22.7	14.079	3	0.00099006	8341	160513_QHF_FH_JSI12Kac_6	67.08	50.166			0.8864	0.72809	86.942	9	1	Median	2.0815	1.6975	119.71	2	1	Median	0.90406	1.0641	25.049	3	0	Plateau	0.28225	0.27173	6.3508	2	0	Median	0.48395	0.51729	8.1996	2	0	Median	376230000	249200000	127030000	21102000	8699000	12403000	79500000	34862000	44638000	222630000	167810000	54824000	52994000	37830000	15164000	56977	4276	53673	345969;345970;345971;345972;345973;345974;345975;345976;345977	466461;466462;466463;466464;466465;466466;466467;466468;466469;466470;466471;466472;466473;466474;466475;466476;466477	466475	3099		17	
VTTLPGHIQAVYVQNVVK	1	Unmodified	1965.1047	0.10474643	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	2	2	5	70.498	66.823	2;3	2.074E-33	34931	160513_QHF_FH_JSI9Kac_6	165.75	151.5			0.99823	1.0375	13.185	10	0	Median	1.0503	0.89206	15.741	3	0	Plateau	0.88057	1.0388	4.28	2	0	Median	1.0107	1.0035	6.2379	2	0	Median	0.76989	0.77165	21.38	3	0	Plateau	1814800000	917470000	897340000	309800000	116490000	193310000	229290000	125450000	103840000	182180000	87535000	94642000	1093600000	588010000	505550000	56978	179	53674	345978;345979;345980;345981;345982;345983;345984;345985;345986;345987;345988;345989	466478;466479;466480;466481;466482;466483;466484;466485;466486;466487;466488;466489;466490;466491;466492	466486			15	
VTTMDAELEFAIQPNTTGK	1	Unmodified	2065.0038	0.003771334	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	12									3	3	4	2	81.135	80.639	2;3	4.8702E-138	73292	160511_QHF_FH_JSI10i_1	287.14	274.16			0.94436	0.91551	14.084	10	4	Median	0.93792	0.75814	14.392	3	2	Median	0.7744	0.91096	1.4248	2	0	Median	0.99079	0.93168	14.616	3	2	Median	0.92819	0.96631	8.3582	2	0	Median	1024200000	505760000	518430000	170120000	78922000	91194000	280910000	147190000	133720000	256280000	125430000	130850000	316880000	154220000	162660000	56979	1073;1426;1270	53675	345990;345991;345992;345993;345994;345995;345996;345997;345998;345999;346000;346001	466493;466494;466495;466496;466497;466498;466499;466500;466501;466502;466503;466504;466505;466506;466507;466508;466509;466510;466511;466512;466513;466514;466515;466516;466517;466518;466519;466520;466521;466522;466523;466524;466525;466526;466527;466528	466515			36	
VTTMDAELEFAIQPNTTGK	1	Oxidation (M)	2080.9987	0.99868596	1270;1426;1073	P15311;P35241;P26038	EZR;RDX;MSN	Ezrin;Radixin;Moesin	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	69.764	69.169	2;3	3.8764E-16	62717	160511_QHF_FH_JSI10i_1	124.3	102.43			1.0528	1.0808	48.361	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0528	1.0808	48.361	2	2	Median	87438000	43422000	44016000	0	0	0	0	0	0	0	0	0	87438000	43422000	44016000	56980	1073;1426;1270	53675	346002;346003;346004;346005;346006;346007	466529;466530;466531;466532;466533;466534	466533		720	6	
VTTQTSLPLFR	0	Unmodified	1261.703	0.7030367	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		64.19	63.729	2	0.012556	56531	160511_QHF_FH_JSI11i_3	54.539	25.843			0.88142	0.79423	48.578	2	2	Median	0.65579	0.56333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1847	1.1198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	189220000	96262000	92958000	80031000	47289000	32742000	0	0	0	109190000	48974000	60216000	0	0	0	56981	2448	53676	346008;346009	466535;466536	466535			2	
VTTTVHNIIVGK	1	Unmodified	1280.7452	0.74523587	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			8						6	3	4	3	4	40.527	36.267	2;3	2.6617E-05	29470	160511_QHF_FH_JSI9i_3	134.25	105.16			1.0979	1.1785	32.45	14	9	Median	1.3253	0.88664	27.533	3	2	Plateau	1.0766	1.1991	3.6434	4	2	Linear	0.86362	0.80438	46.794	3	2	Plateau	1.177	1.1776	46.358	4	3	Median	1368100000	699390000	668710000	51910000	23099000	28811000	215960000	116950000	99006000	302080000	152550000	149520000	798150000	406780000	391370000	56982	1201	53677	346010;346011;346012;346013;346014;346015;346016;346017;346018;346019;346020;346021;346022;346023	466537;466538;466539;466540;466541;466542;466543;466544;466545;466546;466547;466548;466549;466550;466551;466552	466543			15	
VTTVASHTSDSDVPSGVTEVVVK	1	Unmodified	2313.17	0.16998504	981	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	3	2	3	54.884	54.138	3	2.9433E-11	46432	160511_QHF_FH_JSI12i_2	103.58	95.684			1.0916	1.0621	21.341	9	0	Median	0.95557	0.79548	3.2241	2	0	Median	0.78235	0.93478	14.885	2	0	Median	1.1113	1.0826	2.7084	2	0	Median	1.1162	1.1704	11.359	3	0	Plateau	758770000	387700000	371070000	119180000	59378000	59807000	201550000	118970000	82575000	208320000	106550000	101780000	229720000	102810000	126910000	56983	981	53678	346024;346025;346026;346027;346028;346029;346030;346031;346032;346033	466553;466554;466555;466556;466557;466558;466559;466560;466561;466562;466563;466564;466565;466566;466567;466568;466569;466570;466571;466572	466556			20	
VTTVTEIGK	1	Unmodified	946.53351	0.53351176	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	4	2	2	30.442	25.723	2	0.00091672	22644	160511_QHF_FH_JSI11i_1	71.692	45.798			0.90837	0.94459	23.728	8	1	Median	1.1446	0.93287	NaN	1	0	Median	0.67664	0.79822	30.49	3	1	Median	0.99135	0.97216	15.118	2	0	Median	1.0012	1.057	14.13	2	0	Median	1827400000	953270000	874120000	383610000	113640000	269960000	540820000	351410000	189420000	363290000	192860000	170430000	539670000	295350000	244320000	56984	1805	53679	346034;346035;346036;346037;346038;346039;346040;346041;346042	466573;466574;466575;466576;466577;466578;466579;466580;466581;466582;466583;466584;466585;466586;466587	466574			15	
VTTVVATLGQGPER	0	Unmodified	1426.778	0.77799256	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.22		4	1				2	3		2	4	3	1	53.076	47.384	2	2.3861E-05	41041	160511_QHF_FH_JSI11i_2	102.4	86.861			1.0308	1.0343	18.701	8	5	Median	1.1108	0.92596	14.395	2	1	Median	1.0144	1.2459	16.379	3	2	Median	0.98432	0.9681	10.608	2	1	Median	1.373	1.4217	NaN	1	1	Median	110730000	51835000	58896000	27913000	14451000	13462000	26487000	11509000	14978000	33868000	17368000	16500000	22463000	8507200	13955000	56985	1688	53680	346043;346044;346045;346046;346047;346048;346049;346050;346051;346052	466588;466589;466590;466591;466592;466593;466594;466595;466596	466593			9	
VTTVVATPGQGPDRPQEVSYTDTK	1	Unmodified	2545.266	0.26601069	1689	P49841	GSK3B	Glycogen synthase kinase-3 beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	1	4	46.377	45.53	3	4.765E-13	41178	160511_QHF_FH_JSI11i_1	109.08	94.668			0.94848	1.0177	18.293	8	2	Median	1.0414	0.88371	14.927	2	0	Median	0.8582	1.0235	1.8244	2	0	Median	1.1118	1.0791	NaN	1	0	Median	0.91907	0.96236	26.295	3	2	Plateau	778610000	402440000	376170000	131100000	73237000	57860000	197880000	109000000	88878000	167750000	82375000	85373000	281890000	137830000	144060000	56986	1689	53681	346053;346054;346055;346056;346057;346058;346059;346060;346061	466597;466598;466599;466600;466601;466602;466603;466604;466605;466606;466607;466608;466609;466610;466611;466612;466613	466599			17	
VTVAGGVHISGLHTESAPR	0	Unmodified	1886.9963	0.99625861	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	6.6		2	8						11	6	7	4	4	48.548	43.285	3;4	3.707E-34	22915	160513_QHF_FH_JSI9Kac_6	162.76	151.49			1.1228	1.0881	16.631	21	0	Median	1.2562	1.0455	13.343	6	0	Median	0.90126	1.0484	10.072	7	0	Median	1.5134	1.4035	8.6542	4	0	Median	1.0183	1.0437	18.145	4	0	Median	3599700000	1687100000	1912600000	1123200000	483720000	639470000	1106600000	567990000	538660000	716590000	288450000	428140000	653250000	346950000	306310000	56987	1650	53682	346062;346063;346064;346065;346066;346067;346068;346069;346070;346071;346072;346073;346074;346075;346076;346077;346078;346079;346080;346081;346082	466614;466615;466616;466617;466618;466619;466620;466621;466622;466623;466624;466625;466626;466627;466628;466629;466630;466631;466632;466633;466634;466635;466636;466637;466638;466639;466640;466641;466642;466643;466644;466645;466646;466647;466648;466649;466650;466651;466652;466653;466654;466655	466639			41	
VTVAGLAGK	1	Unmodified	814.49125	0.49125301	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	6.2	4	4	5				3	4	1	4	6	6	5	37.551	33.35	2	1.6761E-05	28964	160511_QHF_FH_JSI9i_2	108.46	47.673			0.97911	1.0416	43.065	21	1	Median	1.3436	1.0975	21.005	4	0	Median	0.77756	0.92854	15.629	6	0	Median	1.0153	1.0207	79.417	6	1	Median	0.97942	1.0802	20.909	5	0	Median	9854000000	4605000000	5249000000	1918400000	855080000	1063300000	2139200000	1032800000	1106400000	3331700000	1448300000	1883400000	2464700000	1268800000	1195900000	56988	4276	53683	346083;346084;346085;346086;346087;346088;346089;346090;346091;346092;346093;346094;346095;346096;346097;346098;346099;346100;346101;346102;346103	466656;466657;466658;466659;466660;466661;466662;466663;466664;466665;466666;466667;466668;466669;466670;466671;466672;466673;466674;466675;466676;466677;466678;466679;466680;466681;466682;466683;466684;466685;466686;466687;466688;466689;466690;466691;466692	466677			37	
VTVAGLAGKDPVQCSR	1	Unmodified	1656.8617	0.86173896	4276	Q99497	PARK7	Protein deglycase DJ-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			7							2	2	2	1	44.202	43.27	2;3	8.5452E-05	38139	160511_QHF_FH_JSI11i_3	77.324	65.409			0.9126	1.0687	28.758	7	0	Median	1.7421	1.4207	3.7696	2	0	Median	0.89496	1.021	6.4619	2	0	Median	0.77612	0.74004	2.4655	2	0	Median	1.3353	1.3475	NaN	1	0	Median	888700000	446570000	442140000	206760000	80987000	125770000	289470000	165870000	123600000	337350000	178860000	158490000	55124000	20850000	34275000	56989	4276	53684	346104;346105;346106;346107;346108;346109;346110	466693;466694;466695;466696;466697;466698;466699;466700;466701;466702	466694			10	
VTVDTGVIPASEEK	1	Unmodified	1443.7457	0.74568938	454	O60841	EIF5B	Eukaryotic translation initiation factor 5B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.56	5.87	4				1	4				1	3	2	3	53.878	48.84	2	2.0511E-30	43718	160511_QHF_FH_JSI10i_1	195.25	148.05			1.027	1.0408	35.345	8	1	Median	1.1662	0.96592	NaN	1	0	Median	0.84157	0.99185	11.176	2	0	Median	1.0463	1.0143	5.0572	2	0	Median	1.0485	1.0878	54.46	3	1	Median	2034400000	980820000	1053600000	505430000	224040000	281390000	513660000	279110000	234550000	521680000	219250000	302430000	493670000	258420000	235250000	56990	454	53685	346111;346112;346113;346114;346115;346116;346117;346118;346119	466703;466704;466705;466706;466707;466708;466709;466710;466711;466712;466713;466714;466715	466710			13	
VTVEPQDSGTSALPLVSLFFYVVTDGK	1	Unmodified	2868.4797	0.47969186	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		1							5	2	1	2	1	104.64	98.527	3	1.6719E-48	58389	160513_QHF_FH_JSI10Kac_6	163.16	151.42			1.03	0.9958	8.7676	4	1	Median	1.1858	1.0352	4.5659	2	1	Median	0.72223	0.86747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93862	0.98931	NaN	1	0	Median	283480000	134220000	149270000	110940000	51124000	59819000	151830000	71560000	80268000	0	0	0	20714000	11536000	9178100	56991	2466	53686	346120;346121;346122;346123;346124;346125	466716;466717;466718;466719;466720;466721;466722;466723	466722			8	
VTVESTPDLEK	1	Unmodified	1216.6187	0.61869795	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	2	3	2	40.721	36.935	2	1.6001E-05	33312	160511_QHF_FH_JSI12i_1	105.2	86.217			0.8936	0.94143	6.7987	8	0	Median	1.198	0.97532	NaN	1	0	Median	0.82339	0.95838	13.904	2	0	Median	0.93318	0.90145	4.9634	3	0	Median	0.88535	0.94995	1.9407	2	0	Median	1347200000	692430000	654730000	283640000	135000000	148640000	322880000	185870000	137010000	397250000	194690000	202570000	343380000	176870000	166510000	56992	2521	53687	346126;346127;346128;346129;346130;346131;346132;346133	466724;466725;466726;466727;466728;466729;466730;466731;466732;466733;466734	466726			11	
VTVEVIPR	0	Unmodified	911.54402	0.54401687	46	CON__P00735			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1.8	0.4	1	4								1	1	2	1	26.427	25.676	2	0.04312	22335	160511_QHF_FH_JSI10i_2	38.792	14.836		+	1.0672	1.1243	7.8663	5	0	Median	1.3421	1.1243	NaN	1	0	Median	0.85666	1.0478	NaN	1	0	Median	1.0901	1.0884	11.793	2	0	Median	1.0672	1.2039	NaN	1	0	Median	1453300000	717170000	736170000	231280000	106350000	124930000	269330000	156390000	112940000	693870000	321340000	372530000	258850000	133090000	125760000	56993	46	53688	346134;346135;346136;346137;346138	466735;466736	466736			2	
VTVFNASSWTIHQHSFK	1	Unmodified	1987.9904	0.99044495	14	A2RUS2	DENND3	DENN domain-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	70.932	62.096	4	1.1082E-07	33893	160513_QHF_FH_JSI10Kac_6	106.94	97.157			0.99415	0.96578	27.455	4	0	Median	1.2321	1.0715	NaN	1	0	Median	0.65865	0.76517	NaN	1	0	Median	1.5139	1.4354	NaN	1	0	Median	0.80213	0.87052	NaN	1	0	Median	151580000	67534000	84047000	29899000	9158200	20740000	86775000	43182000	43593000	17738000	6362500	11376000	17170000	8831700	8338500	56994	14	53689	346139;346140;346141;346142	466737;466738;466739;466740;466741	466741			4	
VTVGVDGTLYK	1	Unmodified	1150.6234	0.6233894	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			50.128	49.707	2	0.016659	44875	160511_QHF_FH_JSI10i_1	50.108	31.328			0.54333	0.64566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54333	0.64566	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59691000	36416000	23274000	0	0	0	59691000	36416000	23274000	0	0	0	0	0	0	56995	1785	53690	346143	466742	466742			1	
VTVHKNK	2	Acetyl (K)	866.4974	0.49740102	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		10.155	0.80763	3	0.034075	3674	160513_QHF_FH_JSI11Kac_6	35.295	24.538			0.27707	0.27105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27707	0.27105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6556100	4937600	1618500	0	0	0	0	0	0	6556100	4937600	1618500	0	0	0	56996	438	53691	346144	466743	466743			1	
VTVIPFYMGMR	0	Unmodified	1312.6672	0.66718524	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		3	4						3	3	2	3	2	88.393	85.28	2	0.00014613	42499	160513_QHF_FH_JSI11Kac_6	90.657	61.93			0.93404	0.91868	11.227	10	1	Median	1.0078	0.90087	14.315	3	0	Median	0.74853	0.89406	14.681	2	0	Median	0.99671	0.921	11.558	3	1	Plateau	0.95316	0.98282	6.7748	2	0	Median	928250000	455250000	473010000	197950000	94988000	102960000	130280000	78561000	51719000	354280000	177270000	177010000	245750000	104430000	141320000	56997	5534	53692	346145;346146;346147;346148;346149;346150;346151;346152;346153;346154	466744;466745;466746;466747;466748;466749;466750;466751;466752;466753;466754;466755;466756;466757;466758	466748			14	
VTVIPFYMGMR	0	2 Oxidation (M)	1344.657	0.65701449	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	2	0	By MS/MS				15	0								1		1				76.124	65.617	2	0.0037837	33821	160513_QHF_FH_JSI9Kac_5	49.813	45.03			1.6737	1.3829	NaN	1	0	Median	1.6737	1.3829	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2670000	1076000	1594000	2670000	1076000	1594000	0	0	0	0	0	0	0	0	0	56998	5534	53692	346155	466759	466759		2688;2689	1	
VTVIPFYMGMR	0	Oxidation (M)	1328.6621	0.66209987	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		81.059	71.745	2	0.040606	39456	160513_QHF_FH_JSI11Kac_6	49.715	28.716			1.3083	1.2575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3083	1.2575	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	30278000	14847000	15432000	0	0	0	0	0	0	30278000	14847000	15432000	0	0	0	56999	5534	53692	346156	466760	466760		2688;2689	0	
VTVITKHNDDEQYAWESSAGGSFTVR	1	Acetyl (K)	2938.3733	0.37332931	880	P07900;Q14568	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	yes	no	1	0	0	1			By MS/MS		16	0									1			1		76.474	67.149	3	7.8076E-14	36612	160513_QHF_FH_JSI11Kac_6	140.09	126.2			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23363000	23363000	0	0	0	0	0	0	0	23363000	23363000	0	0	0	0	57000	880	53693	346157	466761	466761	619		1	
VTVLFAGQHIAK	1	Unmodified	1282.7398	0.73975656	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.84	6.52		7	8					2	8	7	7	6	5	53.648	49.286	2;3	2.5597E-17	40418	160511_QHF_FH_JSI9i_3	169.09	169.09			1.0152	1.0287	16.857	25	2	Median	1.3497	1.1437	15.694	7	0	Median	0.84857	1.0009	6.1803	7	0	Median	1.0992	1.0553	10.911	6	0	Median	0.84311	0.84048	25.134	5	2	Median	35611000000	17187000000	18424000000	8861600000	3834400000	5027100000	7808400000	3763500000	4045000000	9422300000	4541000000	4881300000	9518800000	5048600000	4470200000	57001	1192	53694	346158;346159;346160;346161;346162;346163;346164;346165;346166;346167;346168;346169;346170;346171;346172;346173;346174;346175;346176;346177;346178;346179;346180;346181;346182	466762;466763;466764;466765;466766;466767;466768;466769;466770;466771;466772;466773;466774;466775;466776;466777;466778;466779;466780;466781;466782;466783;466784;466785;466786;466787;466788;466789;466790;466791;466792;466793;466794;466795;466796;466797;466798;466799;466800;466801;466802;466803;466804;466805;466806;466807;466808;466809;466810;466811;466812;466813;466814;466815;466816;466817;466818;466819;466820;466821	466789			60	
VTVLFAGQHISK	1	Unmodified	1298.7347	0.73467118	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.55		5	8					2	8	7	6	5	5	53.24	48.563	2;3	9.6634E-13	25731	160513_QHF_FH_JSI9Kac_6	137.89	120.38			0.92646	0.92207	23.546	23	0	Median	1.1171	0.93896	39.881	7	0	Median	0.79528	0.81511	12.161	6	0	Linear	0.93259	0.93455	11.559	5	0	Median	0.83642	0.85362	8.0576	5	0	Median	7993000000	3906600000	4086400000	2303500000	947720000	1355800000	2214600000	1190500000	1024100000	1763200000	784890000	978340000	1711700000	983520000	728180000	57002	512	53695	346183;346184;346185;346186;346187;346188;346189;346190;346191;346192;346193;346194;346195;346196;346197;346198;346199;346200;346201;346202;346203;346204;346205	466822;466823;466824;466825;466826;466827;466828;466829;466830;466831;466832;466833;466834;466835;466836;466837;466838;466839;466840;466841;466842;466843;466844;466845;466846;466847;466848;466849;466850;466851;466852;466853;466854;466855;466856;466857;466858;466859;466860;466861;466862;466863;466864	466849			42	
VTVLGHVQR	0	Unmodified	1007.5876	0.58761301	897;1129	P17858;P08237	PFKL;PFKM	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, muscle type	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.47		3	4						4	4	4	2	1	24.385	20.626	2;3	0.00044201	11580	160513_QHF_FH_JSI9Kac_6	66.299	54.085			0.88044	0.95189	26.536	11	0	Median	1.3079	1.0964	30.901	4	0	Median	0.68336	0.61152	22.773	4	0	Linear	0.76749	0.75487	40.886	2	0	Median	0.88044	0.95189	NaN	1	0	Median	2554300000	1218800000	1335500000	1271300000	562180000	709150000	1140800000	583450000	557380000	119470000	61339000	58132000	22694000	11850000	10844000	57003	1129;897	53696	346206;346207;346208;346209;346210;346211;346212;346213;346214;346215;346216	466865;466866;466867;466868;466869;466870;466871;466872;466873;466874;466875;466876;466877;466878	466874			14	
VTVLTHCNTGALATAGYGTALGVIR	0	Unmodified	2515.3217	0.32169185	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		79.669	76.847	3	3.0284E-14	39832	160513_QHF_FH_JSI10Kac_6	103.96	88.059			1.252	1.2583	15.635	3	0	Median	1.5551	1.2583	NaN	1	0	Median	1.0757	1.2406	22.081	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	137960000	63227000	74735000	24069000	7655400	16413000	113890000	55572000	58322000	0	0	0	0	0	0	57004	4456	53697	346217;346218;346219;346220	466879;466880;466881;466882;466883;466884	466884			6	
VTVLTLQDK	1	Unmodified	1015.5914	0.59136099	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.91	4	6	2				3			4	5	4	2	49.145	46.158	2	0.0026959	39623	160511_QHF_FH_JSI11i_2	73.233	46.54			0.96778	0.94819	21.194	14	9	Median	1.0483	0.87704	16.448	4	3	Median	1.0027	1.1986	16.166	4	3	Median	0.93678	0.94299	23.127	4	2	Median	0.99291	1.0716	17.063	2	1	Median	1911400000	1048400000	862930000	519590000	283350000	236240000	596550000	331190000	265360000	548280000	309530000	238750000	246940000	124360000	122580000	57005	5254	53698	346221;346222;346223;346224;346225;346226;346227;346228;346229;346230;346231;346232;346233;346234;346235	466885;466886;466887;466888;466889;466890;466891;466892;466893;466894;466895;466896;466897;466898	466895			14	
VTVMASLR	0	Unmodified	875.48987	0.48987281	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.37			4					1	4	2	2	3	2	44.015	38.361	2	0.00076556	32090	160511_QHF_FH_JSI10i_3	98.523	65.165			1.0392	1.0654	8.2168	9	0	Median	1.2734	1.0658	0.060454	2	0	Median	0.79719	0.93646	1.774	2	0	Median	1.0315	0.98853	11.65	3	0	Plateau	0.98756	1.0205	8.7158	2	0	Median	1344800000	654540000	690270000	342840000	149280000	193570000	372900000	201580000	171320000	295510000	135430000	160070000	333550000	168250000	165310000	57006	2094	53699	346236;346237;346238;346239;346240;346241;346242;346243;346244	466899;466900;466901;466902;466903;466904;466905;466906	466899			8	
VTVMSTINPTK	1	Unmodified	1189.6377	0.63765925	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5	5.2		3					1				1	2	1	48.849	44.585	2	1.8838E-06	39384	160511_QHF_FH_JSI10i_2	112.75	72.747			0.84589	0.87718	12.828	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80001	0.80066	12.908	2	0	Median	0.84589	0.93593	NaN	1	0	Median	150530000	77395000	73135000	0	0	0	0	0	0	72947000	40996000	31950000	77583000	36399000	41184000	57007	2432	53700	346245;346246;346247;346248	466907;466908;466909;466910	466910			4	
VTVPLVR	0	Unmodified	782.50142	0.50142377	5375	Q9UKM9	RALY	RNA-binding protein Raly	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	44.829	44.382	2	0.008553	37899	160511_QHF_FH_JSI12i_3	72.021	0			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57008	5375	53701	346249;346250;346251;346252	466911;466912;466913;466914	466914			4	
VTVSPYTEIHLK	1	Unmodified	1385.7555	0.7554662	2383	Q13287	NMI	N-myc-interactor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	55.894	54.969	3	4.0667E-06	47545	160511_QHF_FH_JSI11i_2	99.539	91.026			0.85521	0.94959	8.7896	3	1	Median	NaN	NaN	NaN	0	0	Median	0.78764	0.94959	NaN	1	1	Median	0.85521	0.88634	NaN	1	0	Median	0.9334	1.0553	NaN	1	0	Median	213750000	113510000	100240000	0	0	0	56948000	32934000	24013000	92113000	47929000	44184000	64692000	32650000	32042000	57009	2383	53702	346253;346254;346255	466915;466916;466917;466918;466919	466918			5	
VTVVDVNESR	0	Unmodified	1116.5775	0.57750184	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	5.59	5	1				3				2	3	2	2	33.277	29.822	2	0.0024282	26424	160511_QHF_FH_JSI10i_1	59.931	41.606			0.88986	0.90241	32.209	9	3	Median	0.86166	0.70739	2.631	2	2	Median	1.0317	1.2267	37.374	3	0	Median	0.76125	0.74036	27.991	2	0	Median	0.92853	1.0076	9.6535	2	1	Median	1262400000	619690000	642750000	443180000	212010000	231160000	258330000	128260000	130080000	274020000	134010000	140010000	286910000	145420000	141490000	57010	440	53703	346256;346257;346258;346259;346260;346261;346262;346263;346264	466920;466921;466922;466923;466924;466925;466926;466927	466921			8	
VTWAHPEFGQVLASCSFDR	0	Unmodified	2206.0266	0.026572462	4042	Q96EE3	SEH1L	Nucleoporin SEH1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	81.797	80.857	3	0.0075105	67848	160511_QHF_FH_JSI10i_3	37.237	28.418			1.1693	1.0437	23.793	3	2	Median	1.1693	0.97167	NaN	1	1	Median	1.3559	1.5135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0334	1.0437	NaN	1	0	Median	83205000	27129000	56076000	16984000	2283900	14700000	30766000	7826800	22939000	0	0	0	35455000	17018000	18437000	57011	4042	53704	346265;346266;346267	466928;466929;466930;466931	466928			4	
VTWDGHSGSMAR	0	Unmodified	1302.5775	0.57751861	2676	Q15459	SF3A1	Splicing factor 3A subunit 1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	2.56	0.497		4	5							1	2	3	3	24.141	23.607	2;3	2.009E-05	19934	160511_QHF_FH_JSI11i_3	84.169	64.543			1.0617	1.0929	15.529	9	0	Median	1.5581	1.3261	NaN	1	0	Median	0.99438	1.2052	13.831	2	0	Median	1.0617	1.1099	7.1934	3	0	Plateau	0.85214	0.87359	5.9634	3	0	Plateau	1174800000	597820000	576950000	84211000	34125000	50086000	126720000	63212000	63505000	495980000	234360000	261620000	467860000	266130000	201740000	57012	2676	53705	346268;346269;346270;346271;346272;346273;346274;346275;346276	466932;466933;466934;466935;466936;466937	466934			6	
VTWSSGSTEAIYR	0	Unmodified	1455.6994	0.69940789	11	A1X283	SH3PXD2B	SH3 and PX domain-containing protein 2B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		49.784	49.258	2	0.056578	42485	160511_QHF_FH_JSI11i_2	43.297	32.077			0.70468	0.69252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70468	0.69252	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18042000	10997000	7045300	0	0	0	0	0	0	18042000	10997000	7045300	0	0	0	57013	11	53706	346277	466938	466938			1	
VTWVSQASADQR	0	Unmodified	1346.6579	0.65787742	3457	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	34.425	33.095	2	0.0035693	28012	160511_QHF_FH_JSI12i_2	65.347	32.506			0.45077	0.49059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45077	0.49059	NaN	1	1	Median	25078000	18977000	6101600	0	0	0	0	0	0	0	0	0	25078000	18977000	6101600	57014	3457	53707	346278;346279	466939;466940	466939			2	
VTYASDYFDQLYAWAVELIR	0	Unmodified	2422.1845	0.18451289	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			102.47	96.749	2;3	1.5347E-165	57188	160513_QHF_FH_JSI10Kac_6	318.43	292.79			0.95103	1.1299	4.6286	2	1	Median	NaN	NaN	NaN	0	0	Median	0.95103	1.1299	4.6286	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182060000	98993000	83062000	0	0	0	182060000	98993000	83062000	0	0	0	0	0	0	57015	1609	53708	346280;346281	466941;466942;466943	466943			3	
VTYASDYFDQLYAWAVELIRR	0	Unmodified	2578.2856	0.28562392	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			100.45	94.73	3	0.00062791	55780	160513_QHF_FH_JSI10Kac_6	55.588	47.784			1.2067	1.4561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2067	1.4561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	285510000	122120000	163400000	0	0	0	285510000	122120000	163400000	0	0	0	0	0	0	57016	1609	53709	346282	466944	466944			1	
VTYCPTEPGNYIINIK	1	Unmodified	1880.9342	0.93423521	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								2	1	3	4	75.632	74.955	2;3	1.6437E-11	65908	160511_QHF_FH_JSI11i_2	112.13	89.405			0.67005	0.74503	42.44	6	4	Median	0.41419	0.34285	NaN	1	1	Median	0.64213	0.74524	NaN	1	1	Median	0.69917	0.74482	NaN	1	0	Median	0.91438	0.9242	32.223	3	2	Median	249220000	137770000	111450000	33543000	20461000	13081000	71564000	42516000	29048000	38663000	20120000	18544000	105450000	54675000	50772000	57017	1192	53710	346283;346284;346285;346286;346287;346288;346289;346290;346291;346292	466945;466946;466947;466948;466949;466950;466951;466952;466953	466953			9	
VTYDMIGGLSSQLK	1	Unmodified	1510.7701	0.77012999	3586	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	76.5	75.727	2	0.0055166	65528	160511_QHF_FH_JSI12i_2	53.569	28.227			0.73256	0.76546	15.222	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70785	0.68735	NaN	1	1	Median	0.75813	0.85245	NaN	1	0	Median	32091000	20629000	11462000	0	0	0	0	0	0	16768000	12087000	4680700	15323000	8541500	6781400	57018	3586	53711	346293;346294	466954;466955	466955			2	
VTYHPDGPEGQAYDVDFTPPFR	0	Unmodified	2507.1394	0.13935361	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		75.744	75.744	3	3.0243E-16	67579	160511_QHF_FH_JSI11i_3	138.66	134.59			1.1773	1.137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1773	1.137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	173590000	84824000	88768000	0	0	0	0	0	0	173590000	84824000	88768000	0	0	0	57019	2614	53712	346295;346296	466956;466957;466958	466956			3	
VTYKNVPNWHR	1	Acetyl (K)	1454.7419	0.74188183	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	51.22	41.876	2;3	2.2915E-05	21806	160513_QHF_FH_JSI12Kac_6	93.839	83.513			0.82047	0.8754	31.589	7	0	Median	1.1103	0.95118	NaN	1	0	Median	0.83641	0.99338	3.5692	2	0	Median	0.51541	0.4929	6.4811	2	0	Median	0.79271	0.8489	4.347	2	0	Median	660130000	375380000	284750000	54835000	25916000	28918000	336110000	185500000	150610000	187050000	121560000	65490000	82131000	42401000	39731000	57020	2021	53713	346297;346298;346299;346300;346301;346302;346303	466959;466960;466961;466962;466963;466964;466965;466966;466967;466968;466969;466970;466971	466966	2061		13	
VTYLVHNFEEGGGVAMGMYNQDK	1	Oxidation (M)	2574.1519	0.15190891	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.61		2	4						8	3	3	4	4	70.03	64.449	3	8.0389E-38	34002	160513_QHF_FH_JSI9Kac_6	162.71	159.06			0.9309	0.9277	27.276	13	3	Median	1.1188	0.95154	54.416	3	2	Median	0.80596	0.97247	18.022	2	0	Median	0.97983	0.9387	14.945	4	1	Median	0.88993	0.92579	13.755	4	0	Median	813220000	387050000	426170000	119260000	59984000	59279000	79247000	43316000	35931000	213420000	97547000	115870000	401290000	186200000	215090000	57021	576	53714	346304;346305;346306;346307;346308;346309;346310;346311;346312;346313;346314;346315;346316;346317	466972;466973;466974;466975;466976;466977;466978;466979;466980;466981;466982;466983;466984;466985;466986;466987;466988;466989;466990;466991;466992;466993;466994	466982		221;222	23	
VTYLVHNFEEGGGVAMGMYNQDK	1	Unmodified	2558.157	0.15699429	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.61		4	8						9	3	3	7	8	75.69	71.716	2;3;4	2.4926E-90	38419	160513_QHF_FH_JSI10Kac_6	228.71	216.05			0.89963	0.85592	38.476	20	7	Median	0.98845	0.82431	73.772	3	1	Plateau	0.64651	0.77335	4.4927	3	0	Median	0.89105	0.84814	21.919	6	2	Median	1.0453	1.0761	32.134	8	4	Median	4859800000	2469600000	2390200000	632740000	250530000	382210000	843000000	536220000	306780000	1697300000	880970000	816320000	1686800000	801850000	884940000	57022	576	53714	346318;346319;346320;346321;346322;346323;346324;346325;346326;346327;346328;346329;346330;346331;346332;346333;346334;346335;346336;346337;346338	466995;466996;466997;466998;466999;467000;467001;467002;467003;467004;467005;467006;467007;467008;467009;467010;467011;467012;467013;467014;467015;467016;467017;467018;467019;467020;467021;467022;467023;467024;467025;467026;467027;467028;467029;467030;467031;467032;467033;467034;467035	467034			41	
VTYLVHNFEEGGGVAMGMYNQDK	1	2 Oxidation (M)	2590.1468	0.14682353	576	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	65.029	56.058	3	3.1219E-14	29290	160513_QHF_FH_JSI12Kac_6	114.04	107.48			0.91275	1.0169	40.629	6	5	Median	1.1938	1.0187	51.403	2	2	Median	0.65806	0.76406	37.357	2	2	Median	1.7468	1.6898	NaN	1	1	Median	0.95413	1.0393	NaN	1	0	Median	102730000	54497000	48238000	40458000	18962000	21496000	31828000	21958000	9869300	8539500	2350400	6189100	21910000	11227000	10683000	57023	576	53714	346339;346340;346341;346342;346343;346344	467036;467037;467038;467039;467040;467041;467042;467043	467040		221;222	8	
VTYMEASAK	1	Unmodified	998.47428	0.47428232	1977	P62070	RRAS2	Ras-related protein R-Ras2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	20.299	19.708	2	0.0097011	16801	160511_QHF_FH_JSI11i_1	50.805	28.845			1.0125	1.2369	32.372	3	0	Plateau	1.5264	1.2369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3866	1.3836	NaN	1	0	Median	0.73927	0.75309	NaN	1	0	Median	390160000	205290000	184870000	82999000	34980000	48020000	0	0	0	131200000	43080000	88122000	175960000	127230000	48731000	57024	1977	53715	346345;346346;346347	467044;467045;467046	467044			3	
VTYMEEERNFTTEQVTAMLLSK	1	Unmodified	2619.256	0.25603963	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	93.139	89.732	3	1.3296E-47	43741	160513_QHF_FH_JSI11Kac_6	181.69	161.07			0.98357	0.95599	11.244	10	0	Median	1.0684	0.90698	7.7266	2	0	Median	0.70773	0.85024	4.0141	2	0	Median	0.89941	0.87113	12.715	3	0	Plateau	1.0055	1.0262	9.1158	3	0	Median	2726800000	1468600000	1258200000	315560000	154270000	161290000	448690000	279010000	169670000	503220000	275710000	227510000	1459300000	759590000	699730000	57025	1417	53716	346348;346349;346350;346351;346352;346353;346354;346355;346356;346357	467047;467048;467049;467050;467051;467052;467053;467054;467055;467056;467057;467058;467059;467060;467061;467062;467063;467064;467065	467050			19	
VTYMEEERNFTTEQVTAMLLSK	1	Oxidation (M)	2635.251	0.25095425	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	88.987	88.898	3	0.0002812	77230	160511_QHF_FH_JSI12i_3	54.672	46.96			1.1005	1.1212	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1005	1.1212	NaN	1	1	Median	109130000	59884000	49248000	0	0	0	0	0	0	0	0	0	109130000	59884000	49248000	57026	1417	53716	346358	467066	467066		1078	1	
VTYRPLDPDNYDK	1	Unmodified	1594.7627	0.76273643	449	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		43.241	42.45	3	0.026223	37275	160511_QHF_FH_JSI11i_3	34.82	20.563			1.2947	1.1369	33.112	2	1	Median	1.7469	1.4368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.95963	0.89956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148350000	72319000	76028000	28798000	9185000	19613000	0	0	0	119550000	63134000	56415000	0	0	0	57027	449	53717	346359;346360	467067;467068	467067			2	
VTYTPMAPGSYLISIK	1	Oxidation (M)	1755.9117	0.91170885	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.59	6.54		5	4					4	4	4	5	4	4	80.349	75.515	2;3	5.7816E-33	38776	160513_QHF_FH_JSI9Kac_6	172.76	149.38			0.95322	1.024	13.029	17	1	Median	1.2125	1.0264	6.0859	4	0	Median	0.96684	0.99098	18.728	5	0	Linear	0.98607	0.99029	8.5913	4	0	Median	0.98112	1.0787	12.29	4	1	Median	533530000	271680000	261850000	106230000	44074000	62153000	110370000	60999000	49375000	143490000	76883000	66604000	173440000	89724000	83713000	57028	1192	53718	346361;346362;346363;346364;346365;346366;346367;346368;346369;346370;346371;346372;346373;346374;346375;346376;346377	467069;467070;467071;467072;467073;467074;467075;467076;467077;467078;467079;467080;467081;467082;467083;467084;467085;467086;467087;467088;467089;467090;467091	467084		820	23	
VTYTPMAPGSYLISIK	1	Unmodified	1739.9168	0.91679423	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	6.31	9	8	5						8	7	8	8	7	87.378	84.689	2;3	2.369E-43	40238	160513_QHF_FH_JSI12Kac_6	185.57	152.52			0.93513	0.97262	20.867	28	5	Median	1.1806	0.9988	7.4425	5	1	Median	0.78768	0.92822	10.418	8	2	Median	0.96854	0.94252	35.696	8	1	Median	0.96185	0.996	8.7922	7	1	Median	5183800000	2685200000	2498600000	1077200000	506200000	571020000	1416500000	808540000	607970000	1681500000	853210000	828340000	1008500000	517280000	491260000	57029	1192	53718	346378;346379;346380;346381;346382;346383;346384;346385;346386;346387;346388;346389;346390;346391;346392;346393;346394;346395;346396;346397;346398;346399;346400;346401;346402;346403;346404;346405;346406;346407	467092;467093;467094;467095;467096;467097;467098;467099;467100;467101;467102;467103;467104;467105;467106;467107;467108;467109;467110;467111;467112;467113;467114;467115;467116;467117;467118;467119;467120;467121;467122;467123;467124;467125;467126;467127;467128;467129;467130;467131;467132;467133;467134;467135;467136;467137;467138;467139;467140;467141;467142;467143;467144;467145	467141			54	
VTYVVLDEADR	0	Unmodified	1278.6456	0.6455814	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.858	51.362	2	0.00014102	46580	160511_QHF_FH_JSI12i_1	83.883	57.499			0.87883	1.0587	11.397	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.87756	1.029	NaN	1	1	Median	0.87883	0.85808	NaN	1	1	Median	1.0373	1.0587	NaN	1	0	Median	289080000	154860000	134220000	0	0	0	107510000	60557000	46950000	99885000	52883000	47002000	81687000	41417000	40271000	57030	3216	53719	346408;346409;346410	467146;467147;467148;467149	467147			4	
VVAAPQRPGTEPQPEMPDTVLQSETLK	1	Unmodified	2917.4855	0.48552229	655	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.81	0.808	7	5	4							5	6	4	1	67.754	67.028	3;4	9.3313E-21	59739	160511_QHF_FH_JSI11i_3	118.67	107.04			0.99967	0.96816	15.444	16	2	Median	1.0617	0.85704	15.916	5	2	Median	0.87367	1.0411	9.4456	6	0	Median	0.97102	0.88382	10.386	4	0	Linear	1.0435	1.0496	NaN	1	0	Median	966880000	509500000	457380000	256250000	121870000	134380000	374780000	206510000	168270000	307680000	166560000	141120000	28173000	14560000	13613000	57031	655	53720	346411;346412;346413;346414;346415;346416;346417;346418;346419;346420;346421;346422;346423;346424;346425;346426	467150;467151;467152;467153;467154;467155;467156;467157;467158;467159;467160;467161;467162;467163;467164;467165;467166;467167;467168;467169;467170;467171;467172;467173;467174;467175;467176;467177;467178;467179;467180;467181;467182;467183;467184	467153			35	
VVACNLYPFVK	1	Unmodified	1308.69	0.69002918	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	69.47	68.763	2	0.00039046	60084	160511_QHF_FH_JSI11i_2	72.23	64.187			0.60161	0.60499	30	6	1	Median	0.60939	0.5105	NaN	1	0	Median	0.55724	0.66139	12.115	2	0	Median	0.56038	0.55115	12.69	2	0	Median	1.0428	1.1301	NaN	1	1	Median	742480000	426160000	316330000	74186000	40808000	33378000	180980000	130570000	50413000	256730000	169150000	87578000	230590000	85628000	144960000	57032	1381	53721	346427;346428;346429;346430;346431;346432	467185;467186;467187;467188;467189;467190;467191;467192	467190			7	
VVACTSAFLLWDPTK	1	Unmodified	1706.8702	0.87017839	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	6.63	3	6							4	1	5	5	2	93.562	90.82	2;3	1.965E-24	44139	160513_QHF_FH_JSI11Kac_6	160.22	141.6			0.90225	0.92312	31.073	13	6	Median	0.97293	0.85329	NaN	1	1	Median	0.65121	0.74757	21.197	5	3	Median	0.90225	0.92312	17.055	5	2	Median	1.5473	1.698	25.346	2	0	Median	651850000	338220000	313630000	17902000	9421900	8480100	228890000	121000000	107890000	305840000	166190000	139650000	99217000	41609000	57607000	57033	1334	53722	346433;346434;346435;346436;346437;346438;346439;346440;346441;346442;346443;346444;346445	467193;467194;467195;467196;467197;467198;467199;467200;467201;467202;467203;467204;467205;467206;467207;467208;467209	467194			17	
VVADGAGLPGEDWVFVSSK	1	Unmodified	1931.9629	0.9628928	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.27	0.442	11	4								2	4	5	4	88.879	88.433	2;3	2.8691E-16	80439	160511_QHF_FH_JSI11i_1	174.65	129.4			1.0033	1.0031	22.024	12	8	Median	1.2859	1.0499	19.59	2	1	Median	0.99957	1.1714	14.182	3	2	Median	1.0071	0.98412	19.581	3	2	Median	0.92093	0.94431	30.916	4	3	Median	627570000	303310000	324250000	79335000	28228000	51107000	235980000	120640000	115340000	150490000	69001000	81490000	161760000	85442000	76322000	57034	2460	53723	346446;346447;346448;346449;346450;346451;346452;346453;346454;346455;346456;346457;346458;346459;346460	467210;467211;467212;467213;467214;467215;467216;467217;467218;467219;467220;467221;467222;467223;467224;467225;467226;467227;467228;467229	467212			20	
VVAEEAWENHLK	1	Unmodified	1423.7096	0.70957864	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	43.274	42.058	3	0.032101	36021	160511_QHF_FH_JSI12i_2	32.202	26.818			0.64651	0.64417	67.287	2	1	Median	1.2021	1.0367	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3477	0.40029	NaN	1	1	Median	107870000	70705000	37161000	41518000	21266000	20252000	0	0	0	0	0	0	66348000	49439000	16909000	57035	5626	53724	346461;346462	467230;467231	467230			2	
VVAEGFDSANGINISPDDK	1	Unmodified	1946.9222	0.92215019	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	63.998	63.373	2;3	7.1787E-138	57413	160511_QHF_FH_JSI10i_1	347.65	331.51			0.97124	0.93802	12.266	8	1	Median	1.1368	0.94062	11.045	2	0	Median	0.75495	0.88545	7.5591	2	0	Median	1.0705	1.0397	22.493	2	1	Median	0.97124	0.99972	8.4126	2	0	Median	1591300000	807620000	783650000	318390000	137630000	180750000	468810000	278740000	190070000	385690000	191140000	194550000	418380000	200110000	218270000	57036	2639	53725	346463;346464;346465;346466;346467;346468;346469;346470	467232;467233;467234;467235;467236;467237;467238;467239;467240;467241;467242;467243;467244;467245	467242			14	
VVAEPQTQR	0	Unmodified	1026.5458	0.54580778	3859	Q92615	LARP4B	La-related protein 4B	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	11.563	10.869	2	3.4939E-05	8797	160511_QHF_FH_JSI12i_1	100.19	61.396			1.0959	0.89587	22.58	3	2	Median	1.3019	1.0635	24.26	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80296	0.82471	NaN	1	0	Median	308510000	152290000	156220000	207440000	93495000	113950000	0	0	0	0	0	0	101060000	58791000	42273000	57037	3859	53726	346471;346472;346473	467246;467247;467248;467249	467247			4	
VVAEVGDIPTVLVQNK	1	Unmodified	1679.9458	0.94578617	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			79.33	79.169	3	0.0010086	71845	160511_QHF_FH_JSI10i_1	52.254	45.956			0.75575	0.88198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75575	0.88198	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27801000	18326000	9474700	0	0	0	27801000	18326000	9474700	0	0	0	0	0	0	57038	5394	53727	346474	467250	467250			1	
VVAEVYDQER	0	Unmodified	1206.5881	0.58806652	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.33	4.78	4	1					1			1	3	1	1	27.999	25.883	2	1.5386E-05	22956	160511_QHF_FH_JSI10i_1	100.25	80.469			0.95601	1.0218	39.249	6	1	Median	1.1869	0.97975	NaN	1	0	Median	0.87865	1.0656	54.618	3	1	Median	0.88641	0.8697	NaN	1	0	Median	1.0311	1.0792	NaN	1	0	Median	1041600000	496820000	544730000	217580000	101310000	116270000	338410000	173280000	165130000	251380000	116810000	134570000	234190000	105420000	128760000	57039	5315	53728	346475;346476;346477;346478;346479;346480	467251;467252;467253;467254;467255;467256;467257	467254			7	
VVAEVYDQERFDNSDLSA	0	Unmodified	2055.9385	0.93852854	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	61.893	61.252	2;3	7.7981E-52	55787	160511_QHF_FH_JSI12i_1	216.46	208.55			1.0479	1.0636	7.6302	8	0	Median	1.346	1.114	4.6803	2	0	Median	0.86709	1.027	3.0798	2	0	Median	1.0803	1.0456	14.315	2	0	Median	1.0378	1.0787	9.7123	2	0	Median	1299300000	642730000	656610000	247630000	106540000	141090000	374810000	181080000	193730000	326660000	176940000	149720000	350230000	178170000	172070000	57040	5315	53729	346481;346482;346483;346484;346485;346486;346487;346488	467258;467259;467260;467261;467262;467263;467264;467265;467266;467267;467268;467269;467270;467271;467272	467262			15	
VVAFMDHIR	0	Unmodified	1086.5644	0.56443473	972	P24468;P10589	NR2F2;NR2F1	COUP transcription factor 2;COUP transcription factor 1	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	44.538	44.418	3	0.0014745	39213	160511_QHF_FH_JSI11i_3	45.022	38.287			0.72669	0.69847	1.4696	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78001	0.70577	NaN	1	0	Median	0.67701	0.69125	NaN	1	0	Median	86799000	48457000	38341000	0	0	0	0	0	0	40356000	22027000	18329000	46443000	26430000	20013000	57041	972	53730	346489;346490	467273;467274	467273			2	
VVAGDEWLFEGPGTYIPR	0	Unmodified	2004.9945	0.99452728	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	98.846	98.707	2;3	1.7499E-05	86713	160511_QHF_FH_JSI11i_2	65.231	47.314			1.1444	1.2582	5.4539	5	0	Median	1.482	1.2947	4.0468	2	0	Median	1.0263	1.2656	NaN	1	0	Median	1.122	1.1455	NaN	1	0	Median	1.1444	1.2549	NaN	1	0	Median	131560000	60673000	70892000	41636000	16345000	25291000	24771000	11679000	13092000	28071000	15787000	12284000	37088000	16862000	20225000	57042	2573	53731	346491;346492;346493;346494;346495;346496	467275;467276;467277;467278;467279;467280;467281;467282	467278			7	
VVAGDEWLFEGPGTYIPRK	1	Unmodified	2133.0895	0.089490294	2573	Q14764	MVP	Major vault protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								2	1	2	86.172	85.536	3	2.2188E-05	74250	160511_QHF_FH_JSI12i_3	89.107	72.8			1.3845	1.4373	48.282	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.73852	0.87151	54.713	2	1	Median	NaN	NaN	NaN	0	0	Median	1.3845	1.4373	NaN	1	1	Median	69040000	22191000	46849000	0	0	0	29016000	13115000	15901000	0	0	0	40024000	9075900	30949000	57043	2573	53732	346497;346498;346499;346500;346501	467283;467284;467285;467286;467287;467288;467289;467290	467289			8	
VVAHMMPDLPNVGLER	0	Unmodified	1776.9015	0.90149529	4815	Q9H9T3	ELP3	Elongator complex protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	72.78	72.002	3	1.4737E-05	64261	160511_QHF_FH_JSI11i_3	91.969	87.797			1.3119	1.3197	22.565	7	1	Median	1.7778	1.5068	45.843	2	1	Median	1.2635	1.5136	19.388	2	0	Median	1.3679	1.3368	9.4739	2	0	Median	1.2099	1.2067	NaN	1	0	Median	499530000	230940000	268590000	70298000	24135000	46163000	109180000	53852000	55331000	216860000	101090000	115770000	103190000	51865000	51324000	57044	4815	53733	346502;346503;346504;346505;346506;346507;346508	467291;467292;467293;467294;467295;467296;467297;467298;467299;467300	467292			10	
VVAIRPAIQIHR	0	Unmodified	1371.8463	0.84628732	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			49.218	40.605	4	0.0026783	22382	160513_QHF_FH_JSI10Kac_6	37.18	29.815			0.73401	0.8781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73401	0.8781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9563000	5562400	4000600	0	0	0	9563000	5562400	4000600	0	0	0	0	0	0	57045	3146	53734	346509	467301	467301			1	
VVAIYDYTK	1	Unmodified	1070.5648	0.56481189	3484;5123	Q8IZP0;Q9NYB9	ABI1;ABI2	Abl interactor 1;Abl interactor 2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		47.687	46.948	2	0.00097702	42321	160511_QHF_FH_JSI10i_1	82.426	56.689			0.87292	0.87896	92.5	4	1	Median	0.94767	0.80753	NaN	1	0	Median	1.8927	2.268	122.67	2	1	Median	0.80406	0.811	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	355830000	106900000	248930000	39197000	21387000	17811000	245270000	56055000	189220000	71362000	29458000	41904000	0	0	0	57046	3484;5123	53735	346510;346511;346512;346513	467302;467303	467302			2	
VVALEQSR	0	Unmodified	900.50288	0.50288033	2635	Q15126	PMVK	Phosphomevalonate kinase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	18.138	17.192	2	0.022268	14443	160511_QHF_FH_JSI9i_2	44.117	27.606			1.1407	1.0932	9.6635	2	0	Median	1.3818	1.1706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94173	1.021	NaN	1	0	Median	150190000	73317000	76871000	67039000	29501000	37537000	0	0	0	0	0	0	83149000	43816000	39333000	57047	2635	53736	346514;346515	467304;467305	467305			2	
VVALFYFASK	1	Unmodified	1143.6328	0.63283187	2256	Q07812	BAX	Apoptosis regulator BAX	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	1	2	2	85.044	78.413	2	5.561E-05	42008	160513_QHF_FH_JSI11Kac_6	89.247	53.303			1.3936	1.4689	51.783	5	4	Median	1.3688	1.1493	NaN	1	1	Median	2.022	2.3715	NaN	1	1	Median	1.2747	1.1986	NaN	1	1	Median	2.2422	2.3864	68.625	2	1	Median	724530000	208700000	515820000	187660000	58437000	129230000	240270000	49650000	190620000	209220000	66619000	142600000	87377000	33997000	53380000	57048	2256	53737	346516;346517;346518;346519;346520;346521;346522	467306;467307;467308;467309;467310;467311;467312;467313	467307			8	
VVALIGVATAADTLVTK	1	Unmodified	1640.9713	0.97127264	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.258		13	1							4	4	3	3	100.01	99.88	2;3	1.9932E-07	88342	160511_QHF_FH_JSI10i_2	122.42	112.74			0.39324	0.36677	35.122	6	6	Median	0.41764	0.37003	NaN	1	1	Median	0.41148	0.51063	54.605	2	2	Median	0.48356	0.46743	35.545	2	2	Median	0.29466	0.31487	NaN	1	1	Median	65850000	49958000	15892000	5099600	3290800	1808800	20891000	17316000	3574500	27029000	19101000	7928100	12830000	10250000	2580500	57049	5002	53738	346523;346524;346525;346526;346527;346528;346529;346530;346531;346532;346533;346534;346535;346536	467314;467315;467316;467317;467318;467319;467320;467321;467322;467323;467324;467325;467326;467327	467325			14	
VVALPDHLGNR	0	Unmodified	1189.6568	0.65675521	5637	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	40.775	40.222	3	9.5511E-05	35362	160511_QHF_FH_JSI11i_3	71.555	58.202			1.1748	1.0896	7.0554	4	0	Median	1.2006	1.0171	NaN	1	0	Median	0.84134	1.0332	NaN	1	0	Median	1.2721	1.1656	NaN	1	0	Median	1.1495	1.1491	NaN	1	0	Median	492780000	247060000	245710000	50966000	23252000	27714000	77037000	41092000	35945000	151210000	73319000	77889000	213570000	109400000	104160000	57050	5637	53739	346537;346538;346539;346540	467328;467329;467330;467331;467332	467329			5	
VVANGDTANK	1	Unmodified	987.49852	0.49852324	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	6.0636	5.7397	2	2.0842E-07	3703	160511_QHF_FH_JSI10i_1	116.73	63.175			0.75868	0.86117	19.669	4	0	Median	1.3332	1.1078	NaN	1	0	Median	0.73264	0.89319	NaN	1	0	Median	0.72057	0.68836	NaN	1	0	Median	0.78566	0.83031	NaN	1	0	Median	1273200000	670940000	602270000	359330000	161890000	197440000	276520000	144920000	131600000	312040000	178160000	133890000	325320000	185970000	139350000	57051	4456	53740	346541;346542;346543;346544	467333;467334;467335;467336;467337	467336			5	
VVAPTISSPVCQEQLVEAGR	0	Unmodified	2139.0994	0.099403054	5616	Q9Y490	TLN1	Talin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									1	3	3	1	69.382	68.912	2;3	1.1881E-24	62424	160511_QHF_FH_JSI10i_1	142.85	124.02			1.0284	1.0373	26.214	7	3	Median	1.2704	1.0373	NaN	1	0	Median	0.94528	1.1102	12.643	2	1	Median	0.84728	0.82096	25.986	3	2	Median	1.5777	1.6267	NaN	1	0	Median	337840000	158310000	179530000	35590000	19079000	16511000	72710000	33887000	38824000	158520000	78626000	79899000	71020000	26722000	44298000	57052	5616	53741	346545;346546;346547;346548;346549;346550;346551;346552	467338;467339;467340;467341;467342;467343;467344;467345	467344			8	
VVAQSTNSEEIIEGEYNTVMLAIGR	0	Unmodified	2722.3484	0.34836011	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		101.55	101.5	3	1.3075E-34	92229	160511_QHF_FH_JSI10i_1	169.51	158.82			1.1039	1.1765	20.371	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1438	1.3587	NaN	1	0	Median	1.0654	1.0186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	775820000	379130000	396690000	0	0	0	448060000	224720000	223330000	327770000	154410000	173360000	0	0	0	57053	2778	53742	346553;346554	467346	467346			1	
VVASGPGLEHGK	1	Unmodified	1149.6142	0.6142217	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.4	5.98		7	7					3	3	5	4	6	5	16.647	13.731	2;3	1.5843E-06	8160	160513_QHF_FH_JSI11Kac_6	95.417	82.409			0.81962	0.80669	19.069	20	2	Median	0.98855	0.82506	9.189	5	0	Median	0.59289	0.71144	25.98	4	1	Median	0.78568	0.77527	26.309	6	0	Median	0.81354	0.86039	10.656	5	1	Median	2735600000	1455200000	1280400000	497500000	222560000	274940000	512070000	337880000	174190000	1056300000	526070000	530190000	669780000	368720000	301060000	57054	512	53743	346555;346556;346557;346558;346559;346560;346561;346562;346563;346564;346565;346566;346567;346568;346569;346570;346571;346572;346573;346574	467347;467348;467349;467350;467351;467352;467353;467354;467355;467356;467357;467358;467359;467360;467361;467362;467363;467364;467365;467366;467367;467368;467369;467370;467371	467354			25	
VVASVHASISGSSASSTSSTPEVK	1	Unmodified	2274.1339	0.13393388	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		37.03	37.03	3	2.9592E-08	32439	160511_QHF_FH_JSI11i_3	80.412	65.798			1.507	1.4302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.507	1.4302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26858000	12901000	13957000	0	0	0	0	0	0	26858000	12901000	13957000	0	0	0	57055	1774	53744	346575	467372;467373	467373			2	
VVAVDCGIK	1	Unmodified	959.511	0.51100218	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	30.809	28.417	2	0.0024461	25167	160511_QHF_FH_JSI10i_1	75.738	60.963			1.034	0.96996	26.649	5	0	Median	1.1688	0.96996	NaN	1	0	Median	1.034	1.2214	NaN	1	0	Median	0.87836	0.85347	18.022	2	0	Median	1.4254	1.5197	NaN	1	0	Median	1613600000	783240000	830330000	161370000	74845000	86529000	510800000	266150000	244650000	595080000	289330000	305750000	346310000	152910000	193400000	57056	1372	53745	346576;346577;346578;346579;346580	467374;467375;467376;467377;467378;467379;467380	467377			7	
VVAVFVQGPAWQFK	1	Unmodified	1574.8609	0.86093433	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.93	6.49			7						8	4	3	3	5	88.186	82.884	2;3	3.9176E-37	42272	160513_QHF_FH_JSI9Kac_6	223.55	206.92			1.128	1.0392	19.007	14	2	Median	1.1301	0.96017	13.712	4	0	Median	0.89162	1.0259	5.6718	3	0	Median	1.317	1.2536	14.234	2	0	Median	1.2825	1.3546	19.959	5	2	Median	1098500000	544400000	554060000	232720000	123950000	108770000	262040000	162970000	99065000	285890000	119200000	166700000	317800000	138270000	179530000	57057	3090	53746	346581;346582;346583;346584;346585;346586;346587;346588;346589;346590;346591;346592;346593;346594;346595	467381;467382;467383;467384;467385;467386;467387;467388;467389;467390;467391;467392;467393;467394;467395;467396;467397;467398;467399;467400;467401;467402;467403;467404	467395			24	
VVAVSDGETK	1	Unmodified	1003.5186	0.51858998	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	14.469	13.961	2	0.0029807	11800	160511_QHF_FH_JSI12i_1	71.349	40.06			0.92109	0.85	7.9968	3	1	Median	0.99726	0.85	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8576	0.82405	NaN	1	0	Median	0.92109	0.95874	NaN	1	1	Median	159920000	83600000	76318000	65303000	32104000	33199000	0	0	0	48427000	26093000	22334000	46189000	25404000	20785000	57058	3482	53747	346596;346597;346598	467405;467406;467407	467406			3	
VVCDENGSK	1	Unmodified	1006.439	0.43895945	1009;2385	Q13310;P11940	PABPC4;PABPC1	Polyadenylate-binding protein 4;Polyadenylate-binding protein 1	no	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.4687	5.1448	2	1.9956E-06	3063	160511_QHF_FH_JSI11i_1	128.69	100.17			0.98127	0.94695	14.808	4	0	Median	1.1302	0.9121	NaN	1	0	Median	0.83136	0.98313	NaN	1	0	Median	0.85408	0.82385	NaN	1	0	Median	1.1274	1.1704	NaN	1	0	Median	1751500000	896570000	854950000	176100000	92641000	83458000	552750000	308560000	244190000	509690000	286700000	222990000	512980000	208660000	304320000	57059	2385;1009	53748	346599;346600;346601;346602	467408;467409;467410	467408			3	
VVCVYGGTGISEQIAELK	1	Unmodified	1921.9819	0.98191368	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	71.518	70.934	3	0.047375	63173	160511_QHF_FH_JSI11i_3	20.65	5.015			0.96168	0.91942	9.7063	3	0	Median	NaN	NaN	NaN	0	0	Median	0.96168	1.0835	NaN	1	0	Median	0.97959	0.91942	NaN	1	0	Median	0.89219	0.91252	NaN	1	0	Median	228600000	126390000	102210000	0	0	0	40549000	22884000	17665000	120390000	68744000	51642000	67665000	34765000	32900000	57060	3216	53749	346603;346604;346605	467411;467412	467411			2	
VVDAILGLAHHGNGQLR	0	Unmodified	1768.9696	0.96964993	4819	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			54.295	52.732	3	0.0015472	43192	160511_QHF_FH_JSI9i_3	55.755	40.23			0.58195	0.65479	47.447	3	3	Median	1.4168	1.1683	NaN	1	1	Median	0.48683	0.54648	25.571	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74350000	46978000	27372000	21297000	8706000	12591000	53053000	38273000	14780000	0	0	0	0	0	0	57061	4819	53750	346606;346607;346608	467413;467414;467415	467415			3	
VVDALGNAIDGK	1	Unmodified	1170.6245	0.62445203	1263	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.05	4	1				4	3			1	4	3	4	51.553	45.464	2	8.2724E-16	40186	160511_QHF_FH_JSI9i_1	158.41	113.96			1.0325	1.0878	22.241	11	0	Median	1.3919	1.1662	NaN	1	0	Median	0.74945	0.90803	33.23	4	0	Median	1.1168	1.1064	17.662	3	0	Median	1.0325	1.0878	17.926	3	0	Median	14272000000	7001200000	7271200000	2914800000	1361000000	1553800000	3779100000	1833500000	1945600000	4058500000	2115600000	1942900000	3520000000	1691200000	1828900000	57062	1263	53751	346609;346610;346611;346612;346613;346614;346615;346616;346617;346618;346619;346620	467416;467417;467418;467419;467420;467421;467422;467423;467424;467425;467426;467427;467428;467429;467430;467431;467432;467433;467434;467435;467436;467437;467438;467439;467440;467441;467442	467436			27	
VVDDAKKKSLGVMQFK	4	3 Acetyl (K)	1918.0234	0.023384564	5771				yes	yes	3	0	0	3			By MS/MS		13	0						1						1		39.95	30.876	3	0.018199	17786	160513_QHF_FH_JSI11Kac_3	39.685	22.616	+		0.90557	0.89515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90557	0.89515	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81361000	46417000	34944000	0	0	0	0	0	0	81361000	46417000	34944000	0	0	0	57063	5771	53752	346621	467443	467443	3554;3555;3556		1	
VVDDELATR	0	Unmodified	1016.5138	0.51383895	122	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	22.873	22.012	2	0.0094738	19338	160511_QHF_FH_JSI12i_1	51.066	38.078			0.98189	0.90237	14.82	2	0	Median	1.1998	1.0021	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80358	0.8126	NaN	1	0	Median	329630000	162880000	166740000	147820000	73796000	74029000	0	0	0	0	0	0	181800000	89087000	92715000	57064	122	53753	346622;346623	467444	467444			1	
VVDELNLLHTELAK	1	Unmodified	1592.8774	0.87737225	3641	Q8NEU8	APPL2	DCC-interacting protein 13-beta	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.555	72.93	3	0.019966	63947	160511_QHF_FH_JSI11i_2	37.77	27.285			1.0535	1.0685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0535	1.0685	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	19593000	10062000	9531600	0	0	0	0	0	0	19593000	10062000	9531600	0	0	0	57065	3641	53754	346624	467445	467445			1	
VVDFDETWNK	1	Unmodified	1251.5772	0.57716749	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	54.971	54.308	2	0.0052716	49289	160511_QHF_FH_JSI12i_1	54.191	42.555			1.3966	1.4492	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3966	1.4492	NaN	1	0	Median	118920000	53332000	65589000	0	0	0	0	0	0	0	0	0	118920000	53332000	65589000	57066	2454	53755	346625	467446	467446			1	
VVDFIDEGVNIGLEVK	1	Unmodified	1744.9247	0.92471638	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			99.225	99.219	3	0.00022145	89794	160511_QHF_FH_JSI10i_1	59.862	48.389			0.70442	0.79693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70442	0.79693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17849000	12013000	5836100	0	0	0	17849000	12013000	5836100	0	0	0	0	0	0	57067	1415	53756	346626	467447;467448;467449	467447			3	
VVDGAVGAQWLAEFRK	1	Unmodified	1744.9261	0.92605378	970	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	80.42	79.699	3	1.1267E-05	71022	160511_QHF_FH_JSI11i_3	95.662	80.026			0.80426	0.90456	29.848	5	2	Median	1.2549	1.0184	NaN	1	0	Median	0.71112	0.82872	12.384	2	1	Median	1.1212	1.0596	NaN	1	0	Median	0.50196	0.50858	NaN	1	1	Median	549920000	268960000	280960000	90979000	42142000	48837000	167050000	84848000	82200000	262880000	123300000	139570000	29014000	18667000	10347000	57068	970	53757	346627;346628;346629;346630;346631	467450;467451;467452;467453;467454;467455;467456;467457	467451			8	
VVDHYENPR	0	Unmodified	1127.536	0.53597137	4661	Q9H1K1	ISCU	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	9.3622	9.4597	3	0.038147	6847	160511_QHF_FH_JSI12i_3	25.437	15.206			0.7752	0.76001	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7752	0.76001	NaN	1	1	Median	32796000	17908000	14888000	0	0	0	0	0	0	0	0	0	32796000	17908000	14888000	57069	4661	53758	346632	467458	467458			1	
VVDLAPLHLDAR	0	Unmodified	1317.7405	0.74048484	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	64.69	63.784	3	0.0019687	54891	160511_QHF_FH_JSI12i_2	50.088	38.169			1.0666	1.1105	13.43	4	0	Median	1.4819	1.3335	NaN	1	0	Median	0.79111	0.96152	NaN	1	0	Median	1.1475	1.1227	NaN	1	0	Median	0.99132	1.0985	NaN	1	0	Median	202040000	103970000	98066000	36320000	15849000	20471000	37298000	21433000	15865000	82175000	41220000	40955000	46244000	25469000	20775000	57070	5675	53759	346633;346634;346635;346636	467459;467460;467461;467462	467459			3	
VVDLEGSLK	1	Unmodified	958.53351	0.53351176	3506	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	1	0	4									1	1	1	1	43.273	42.616	2	0.037177	38707	160511_QHF_FH_JSI12i_1	38.615	20.706			1.0082	0.99895	11.366	4	0	Median	1.0143	0.82889	NaN	1	0	Median	0.82731	0.98006	NaN	1	0	Median	1.1076	1.0803	NaN	1	0	Median	1.0022	1.0182	NaN	1	0	Median	340030000	171700000	168330000	47831000	25195000	22636000	95252000	45838000	49414000	109710000	54456000	55257000	87235000	46212000	41023000	57071	3506	53760	346637;346638;346639;346640	467463	467463			1	
VVDLITNLDMAAFQSHSGLSIFIYR	0	Unmodified	2809.4473	0.44728629	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			96.877	89.463	3	5.3087E-35	52853	160513_QHF_FH_JSI10Kac_6	160.47	147.79			0.93146	0.93961	22.363	2	0	Median	1.27	1.1006	NaN	1	0	Median	0.68316	0.80218	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	318440000	164500000	153940000	84562000	32228000	52334000	233880000	132280000	101610000	0	0	0	0	0	0	57072	3290	53761	346641;346642	467464;467465	467465			2	
VVDLLAPYAK	1	Unmodified	1087.6277	0.6277465	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.53	5.98	4	4	4			1	3	3		4	4	5	6	69.368	65.083	2	7.2871E-08	59327	160511_QHF_FH_JSI10i_1	123.72	88.913			1.0052	1.0246	21.841	19	1	Median	1.1493	1.0105	9.6748	4	0	Linear	0.89425	1.0733	10.929	4	0	Median	1.06	1.0431	31.759	5	1	Median	0.94522	1.0353	25.655	6	0	Median	13284000000	6484600000	6799600000	2290700000	1040100000	1250600000	3482500000	1907800000	1574700000	4191300000	2021400000	2169800000	3319700000	1515200000	1804500000	57073	851	53762	346643;346644;346645;346646;346647;346648;346649;346650;346651;346652;346653;346654;346655;346656;346657;346658;346659;346660;346661	467466;467467;467468;467469;467470;467471;467472;467473;467474;467475;467476;467477;467478;467479;467480;467481;467482;467483;467484;467485;467486;467487;467488;467489;467490;467491;467492;467493;467494;467495;467496;467497;467498;467499;467500;467501;467502;467503;467504;467505;467506;467507;467508;467509;467510;467511	467485			46	
VVDLLAPYAKGGK	2	Acetyl (K)	1371.7762	0.77620165	851	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.2	0.4							4	1			1	3	1	77.574	66.928	2;3	0.00026736	35611	160513_QHF_FH_JSI11Kac_5	97.456	70.342			0.51744	0.5334	33.759	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42935	0.42013	NaN	1	0	Median	0.6236	0.67721	NaN	1	0	Median	24218000	19459000	4759600	0	0	0	3666000	3666000	0	16835000	13810000	3025200	3717000	1982500	1734400	57074	851	53763	346662;346663;346664;346665;346666	467512;467513;467514;467515;467516;467517	467517	510		6	
VVDLLAQDADIVCR	0	Unmodified	1585.8134	0.81339179	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	1	2	75.39	74.987	2;3	1.2129E-09	68294	160511_QHF_FH_JSI12i_1	144.1	109.22			1.0973	1.0783	14.161	4	1	Median	NaN	NaN	NaN	0	0	Median	0.74091	0.8804	NaN	1	0	Median	1.097	1.0665	NaN	1	1	Median	1.1462	1.1632	9.1708	2	0	Median	172040000	93740000	78298000	0	0	0	55359000	33050000	22308000	59056000	29169000	29887000	57623000	31521000	26102000	57075	1356	53764	346667;346668;346669;346670	467518;467519;467520;467521;467522;467523	467520			5	
VVDLLNQAALITNDSK	1	Unmodified	1712.9309	0.93086439	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	84.244	83.792	2;3	3.9401E-05	74563	160511_QHF_FH_JSI9i_1	79.837	61.004			0.7983	0.87321	14.884	6	2	Median	1.1923	0.99161	NaN	1	0	Median	0.76825	0.89787	NaN	1	0	Median	0.84818	0.82782	15.852	2	1	Median	0.7469	0.75263	17.078	2	1	Median	168890000	99213000	69676000	23773000	11976000	11798000	41738000	26069000	15669000	56318000	32363000	23956000	47059000	28806000	18253000	57076	3888	53765	346671;346672;346673;346674;346675;346676	467524;467525;467526;467527	467527			4	
VVDLLVIK	1	Unmodified	897.5899	0.58990443	1883	P56556	NDUFA6	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.29	3	4	2				2	4		3	5	4	3	74.254	69.528	2	0.0012589	62354	160511_QHF_FH_JSI9i_2	91.9	76.461			0.98155	1.0297	7.8243	15	0	Median	1.2663	1.0813	2.9669	3	0	Median	0.89052	1.0705	8.713	5	0	Median	0.99948	0.96968	8.5506	4	0	Median	0.95781	0.99974	6.6078	3	0	Median	766910000	389450000	377450000	124330000	56068000	68264000	214540000	104490000	110050000	257280000	135780000	121500000	170750000	93117000	77635000	57077	1883	53766	346677;346678;346679;346680;346681;346682;346683;346684;346685;346686;346687;346688;346689;346690;346691	467528;467529;467530;467531;467532;467533;467534;467535;467536;467537;467538;467539;467540;467541;467542;467543;467544	467536			17	
VVDLMAHMASK	1	Oxidation (M)	1216.5944	0.59441423	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.17	6.72	1	24	12				2	8	29	19	21	18	18	32.399	27.177	2;3	2.8643E-05	15740	160513_QHF_FH_JSI11Kac_6	100.48	72.078			0.93511	0.92026	50.027	74	18	Median	0.96354	0.83003	26.712	19	4	Median	0.78078	0.91571	71.369	20	9	Median	0.98636	0.94158	36.127	18	2	Median	0.92559	0.97903	47.739	17	3	Median	7914400000	3630900000	4283500000	1369400000	588930000	780470000	2006800000	1126800000	880020000	3087400000	1300800000	1786700000	1450700000	614360000	836340000	57078	812	53767	346692;346693;346694;346695;346696;346697;346698;346699;346700;346701;346702;346703;346704;346705;346706;346707;346708;346709;346710;346711;346712;346713;346714;346715;346716;346717;346718;346719;346720;346721;346722;346723;346724;346725;346726;346727;346728;346729;346730;346731;346732;346733;346734;346735;346736;346737;346738;346739;346740;346741;346742;346743;346744;346745;346746;346747;346748;346749;346750;346751;346752;346753;346754;346755;346756;346757;346758;346759;346760;346761;346762;346763;346764;346765;346766;346767	467545;467546;467547;467548;467549;467550;467551;467552;467553;467554;467555;467556;467557;467558;467559;467560;467561;467562;467563;467564;467565;467566;467567;467568;467569;467570;467571;467572;467573;467574;467575;467576;467577;467578;467579;467580;467581;467582;467583;467584;467585;467586;467587;467588;467589;467590;467591;467592;467593;467594;467595;467596;467597;467598;467599;467600;467601;467602;467603;467604;467605;467606;467607;467608;467609;467610;467611;467612;467613;467614;467615;467616;467617;467618;467619;467620;467621;467622;467623;467624;467625;467626	467570		337;338	79	
VVDLMAHMASK	1	Unmodified	1200.5995	0.59949961	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.82	4	17	13					3	8	13	10	12	10	46.424	43.423	2;3	6.0691E-11	23087	160513_QHF_FH_JSI9Kac_6	133.81	124.15			0.91852	0.90619	129.78	45	32	Median	0.91481	0.75541	87.783	13	9	Median	0.75868	0.90012	198.31	10	5	Median	0.94296	0.90352	114.93	12	10	Median	1.656	1.7846	117.47	10	8	Median	101440000000	54346000000	47093000000	19791000000	9786700000	10004000000	15959000000	9969000000	5990400000	40621000000	21340000000	19281000000	25068000000	13251000000	11817000000	57079	812	53767	346768;346769;346770;346771;346772;346773;346774;346775;346776;346777;346778;346779;346780;346781;346782;346783;346784;346785;346786;346787;346788;346789;346790;346791;346792;346793;346794;346795;346796;346797;346798;346799;346800;346801;346802;346803;346804;346805;346806;346807;346808;346809;346810;346811;346812	467627;467628;467629;467630;467631;467632;467633;467634;467635;467636;467637;467638;467639;467640;467641;467642;467643;467644;467645;467646;467647;467648;467649;467650;467651;467652;467653;467654;467655;467656;467657;467658;467659;467660;467661;467662;467663;467664;467665;467666;467667;467668;467669;467670;467671;467672;467673;467674;467675;467676;467677;467678;467679;467680;467681;467682;467683;467684;467685;467686;467687;467688;467689;467690;467691;467692;467693;467694;467695;467696;467697;467698;467699;467700;467701;467702;467703;467704;467705;467706;467707;467708;467709;467710;467711	467696			85	
VVDLMAHMASK	1	2 Oxidation (M)	1232.5893	0.58932885	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.18		2	3					2	1	3	1	2	2	19.49	15.482	3	0.0028168	12805	160511_QHF_FH_JSI11i_2	47.915	38.26			0.89179	0.88675	21.064	7	4	Median	0.86939	0.7053	12.976	3	1	Plateau	0.89179	1.1191	NaN	1	1	Median	0.81654	0.83325	NaN	1	0	Median	1.0501	1.1109	9.9399	2	2	Median	581000000	304740000	276260000	165940000	86932000	79007000	106230000	62299000	43932000	135910000	78027000	57886000	172920000	77482000	95435000	57080	812	53767	346813;346814;346815;346816;346817;346818;346819;346820	467712;467713;467714;467715;467716;467717;467718;467719;467720;467721;467722	467716		337;338	11	
VVDLMAHMASKE	1	2 Oxidation (M)	1361.6319	0.63192195	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	2	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.09		16	25				2	7	2	8	12	16	16	22.762	20.212	2;3	7.504E-11	39724	160511_QHF_FH_JSI11i_3	127.42	113.31			1.1282	1.0914	47.964	42	14	Median	1.1955	0.9933	17.658	7	2	Median	1.4712	1.8245	37.474	10	3	Linear	1.1642	1.1254	58.098	12	6	Median	1.2346	1.2571	47.28	13	3	Median	4200600000	1870300000	2330300000	395750000	181190000	214550000	713030000	361450000	351590000	1550500000	627600000	922870000	1541300000	700060000	841280000	57081	812	53768	346821;346822;346823;346824;346825;346826;346827;346828;346829;346830;346831;346832;346833;346834;346835;346836;346837;346838;346839;346840;346841;346842;346843;346844;346845;346846;346847;346848;346849;346850;346851;346852;346853;346854;346855;346856;346857;346858;346859;346860;346861;346862;346863;346864;346865;346866;346867;346868;346869;346870;346871;346872	467723;467724;467725;467726;467727;467728;467729;467730;467731;467732;467733;467734;467735;467736;467737;467738;467739;467740;467741;467742;467743;467744;467745;467746;467747;467748;467749;467750;467751;467752;467753;467754;467755;467756;467757;467758;467759;467760;467761;467762;467763;467764;467765;467766;467767;467768;467769;467770;467771;467772;467773;467774;467775;467776;467777;467778;467779;467780;467781;467782	467735		337;338	60	
VVDLMAHMASKE	1	Oxidation (M)	1345.637	0.63700733	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.82	6.42		31	33				1	18	25	28	23	31	26	33.347	28.963	2;3	4.2129E-09	25320	160511_QHF_FH_JSI11i_2	147.37	137.14			1.1089	1.0653	75.14	103	23	Median	1.2201	1.0231	57.229	27	6	Median	0.83754	0.99634	58.023	23	4	Median	1.11	1.0855	93.98	29	11	Median	1.0456	1.1396	82.508	24	2	Median	29321000000	12942000000	16379000000	4081300000	1800100000	2281200000	5099200000	2597600000	2501700000	9373400000	3790000000	5583500000	10767000000	4754200000	6012400000	57082	812	53768	346873;346874;346875;346876;346877;346878;346879;346880;346881;346882;346883;346884;346885;346886;346887;346888;346889;346890;346891;346892;346893;346894;346895;346896;346897;346898;346899;346900;346901;346902;346903;346904;346905;346906;346907;346908;346909;346910;346911;346912;346913;346914;346915;346916;346917;346918;346919;346920;346921;346922;346923;346924;346925;346926;346927;346928;346929;346930;346931;346932;346933;346934;346935;346936;346937;346938;346939;346940;346941;346942;346943;346944;346945;346946;346947;346948;346949;346950;346951;346952;346953;346954;346955;346956;346957;346958;346959;346960;346961;346962;346963;346964;346965;346966;346967;346968;346969;346970;346971;346972;346973;346974;346975;346976;346977;346978;346979;346980	467783;467784;467785;467786;467787;467788;467789;467790;467791;467792;467793;467794;467795;467796;467797;467798;467799;467800;467801;467802;467803;467804;467805;467806;467807;467808;467809;467810;467811;467812;467813;467814;467815;467816;467817;467818;467819;467820;467821;467822;467823;467824;467825;467826;467827;467828;467829;467830;467831;467832;467833;467834;467835;467836;467837;467838;467839;467840;467841;467842;467843;467844;467845;467846;467847;467848;467849;467850;467851;467852;467853;467854;467855;467856;467857;467858;467859;467860;467861;467862;467863;467864;467865;467866;467867;467868;467869;467870;467871;467872;467873;467874;467875;467876;467877;467878;467879;467880;467881;467882;467883;467884;467885;467886;467887;467888;467889;467890;467891;467892;467893;467894;467895;467896;467897;467898;467899;467900;467901;467902;467903;467904;467905;467906;467907;467908;467909;467910;467911;467912;467913;467914;467915;467916;467917;467918;467919;467920;467921;467922;467923;467924;467925;467926	467859		337;338	138	
VVDLMAHMASKE	1	Unmodified	1329.6421	0.64209271	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.69	4	19	17					3	9	13	12	13	14	48.369	45.581	2;3	9.8366E-15	24043	160513_QHF_FH_JSI9Kac_6	134.75	115.4			1.0554	1.0337	128	50	33	Median	1.3351	1.1013	90.265	12	9	Median	0.75494	0.89567	97.832	11	5	Median	1.082	1.0562	137.65	13	10	Median	0.96945	0.99188	170.83	14	9	Median	225260000000	101230000000	124030000000	37167000000	15202000000	21966000000	39249000000	19654000000	19595000000	76875000000	34840000000	42036000000	71966000000	31532000000	40434000000	57083	812	53768	346981;346982;346983;346984;346985;346986;346987;346988;346989;346990;346991;346992;346993;346994;346995;346996;346997;346998;346999;347000;347001;347002;347003;347004;347005;347006;347007;347008;347009;347010;347011;347012;347013;347014;347015;347016;347017;347018;347019;347020;347021;347022;347023;347024;347025;347026;347027;347028;347029;347030;347031;347032	467927;467928;467929;467930;467931;467932;467933;467934;467935;467936;467937;467938;467939;467940;467941;467942;467943;467944;467945;467946;467947;467948;467949;467950;467951;467952;467953;467954;467955;467956;467957;467958;467959;467960;467961;467962;467963;467964;467965;467966;467967;467968;467969;467970;467971;467972;467973;467974;467975;467976;467977;467978;467979;467980;467981;467982;467983;467984;467985;467986;467987;467988;467989;467990;467991;467992;467993;467994;467995;467996;467997;467998;467999;468000;468001;468002;468003;468004;468005;468006;468007;468008;468009;468010;468011;468012;468013;468014;468015;468016;468017;468018;468019;468020;468021;468022;468023;468024;468025;468026;468027;468028;468029;468030;468031;468032;468033;468034	468011			106	
VVDLMAHMASKE	1	Acetyl (K)	1371.6527	0.65265739	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.1	0.639							1	4	2		2	4	1	72.645	62.341	2;3	6.9779E-15	33306	160513_QHF_FH_JSI11Kac_5	142.1	131.27			0.29296	0.29285	121.11	7	3	Median	NaN	NaN	NaN	0	0	Median	1.7866	2.1042	50.307	2	0	Median	0.26324	0.26257	93.905	4	2	Median	0.13364	0.14208	NaN	1	1	Median	141170000	113170000	28002000	0	0	0	8585800	3542600	5043200	129030000	106370000	22662000	3553700	3257500	296170	57084	812	53768	347033;347034;347035;347036;347037;347038;347039	468035;468036;468037;468038;468039;468040;468041	468038	457		7	
VVDLMAHMASKE	1	Acetyl (K);Oxidation (M)	1387.6476	0.64757201	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	1	1		By MS/MS	By MS/MS		14.8	0.433							1	3			2	2		53.724	43.075	2	0.005586	23651	160513_QHF_FH_JSI10Kac_4	59.908	54.809			0.68568	0.74775	130.03	4	0	Median	NaN	NaN	NaN	0	0	Median	1.8795	2.2285	3.3213	2	0	Median	0.23817	0.23522	12.444	2	0	Median	NaN	NaN	NaN	0	0	Median	36565000	27594000	8971100	0	0	0	5306100	1900500	3405600	31259000	25694000	5565500	0	0	0	57085	812	53768	347040;347041;347042;347043	468042;468043	468042	457	337;338	2	
VVDNEGTLQLK	1	Unmodified	1214.6507	0.65066678	4662	Q9H1Z4	WDR13	WD repeat-containing protein 13	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		36.332	36.077	2	0.058525	32474	160511_QHF_FH_JSI11i_1	41.796	28.148			1.3911	1.3643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3911	1.3643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41980000	19680000	22300000	0	0	0	0	0	0	41980000	19680000	22300000	0	0	0	57086	4662	53769	347044	468044	468044			1	
VVDNPIYLSDMGAALTGAESHELQDVLEETNIPK	1	Unmodified	3667.7927	0.79272251	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By matching	2.2	0.4		4	1							1	1	1	2	101.9	101.81	3	1.1601E-148	90380	160511_QHF_FH_JSI10i_2	271.92	265.51			0.98443	1.0941	17.452	4	0	Median	1.3221	1.1559	NaN	1	0	Median	0.82997	1.0355	NaN	1	0	Median	1.1676	1.1894	NaN	1	0	Median	0.7559	0.81042	NaN	1	0	Median	779230000	379940000	399290000	98669000	59387000	39281000	171260000	90206000	81059000	275200000	116880000	158310000	234090000	113460000	120630000	57087	1459	53770	347045;347046;347047;347048;347049	468045	468045			1	
VVDNSALGNSPYHR	0	Unmodified	1527.743	0.74300404	3091	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							1	1	3	4	26.094	25.751	2;3	1.6676E-21	22114	160511_QHF_FH_JSI11i_3	176.8	141.91			1.4915	1.5277	21.286	7	4	Median	2.1612	1.8813	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.398	1.2965	1.7981	2	0	Median	1.5098	1.5299	24.413	4	3	Median	957710000	415350000	542360000	123650000	49608000	74045000	0	0	0	399130000	195150000	203990000	434930000	170590000	264330000	57088	3091	53771	347050;347051;347052;347053;347054;347055;347056;347057;347058	468046;468047;468048;468049;468050;468051;468052;468053;468054;468055;468056;468057;468058	468049			13	
VVDNTTAK	1	Unmodified	846.4447	0.44469675	4642	Q9H0U4;Q92928	RAB1B;RAB1C	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	5.6047	2.3051	2	0.0012164	3091	160511_QHF_FH_JSI10i_1	92.47	50.968			0.88381	0.86859	10.994	7	0	Median	1.1809	0.93508	NaN	1	0	Median	0.64524	0.75653	0.21764	2	0	Median	0.95757	0.93313	10.136	2	0	Median	0.82163	0.8894	8.5241	2	0	Median	4881900000	2523000000	2359000000	1009500000	423210000	586300000	1280500000	745840000	534660000	1109300000	595550000	513750000	1482600000	758370000	724250000	57089	4642	53772	347059;347060;347061;347062;347063;347064;347065	468059;468060;468061;468062;468063;468064;468065;468066;468067;468068;468069	468063			11	
VVDPFSK	1	Unmodified	790.4225	0.42250475	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	3	2	3	38.054	37.263	2	0.0094456	32409	160511_QHF_FH_JSI9i_2	79.116	63.677			0.9645	1.0314	24.378	10	1	Median	1.2462	1.0292	8.4543	2	0	Median	1.0153	1.156	5.6203	3	0	Median	1.0061	1.0034	18.903	2	0	Median	0.6682	0.6557	25.607	3	1	Median	9801600000	5062200000	4739400000	1655100000	687420000	967720000	2855800000	1583900000	1271900000	3310400000	1664800000	1645600000	1980200000	1126000000	854190000	57090	1948	53773	347066;347067;347068;347069;347070;347071;347072;347073;347074;347075	468070;468071;468072;468073;468074;468075;468076;468077;468078;468079;468080;468081;468082;468083;468084;468085;468086;468087;468088;468089;468090;468091;468092	468085			23	
VVDPFSKK	2	Unmodified	918.51747	0.51746776	1948	P61247	RPS3A	40S ribosomal protein S3a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	4.92		7	9						3	5	3	6	5	28.065	26.006	2;3	0.00078302	21679	160511_QHF_FH_JSI11i_2	67.993	48.898			1.0636	1.1562	55.792	19	7	Median	1.5101	1.289	68.368	5	3	Median	1.0636	1.328	15.317	3	1	Median	0.89752	0.90599	83.777	6	3	Median	0.92945	1.0401	14.333	5	0	Median	3792900000	1643300000	2149600000	308970000	101620000	207350000	464810000	272000000	192810000	1083800000	485640000	598190000	1935300000	784030000	1151300000	57091	1948	53774	347076;347077;347078;347079;347080;347081;347082;347083;347084;347085;347086;347087;347088;347089;347090;347091;347092;347093;347094	468093;468094;468095;468096;468097;468098;468099;468100;468101;468102;468103;468104;468105;468106;468107;468108;468109;468110;468111;468112;468113	468105			21	
VVDRDSEEAEIIRK	1	Unmodified	1657.8635	0.8635131	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		2	6							4	3	1		26.844	25.766	3;4	5.4193E-05	20760	160511_QHF_FH_JSI9i_3	94.551	73.599			0.94641	0.95061	23.301	8	2	Median	1.3204	1.0857	30.949	4	2	Median	0.81275	0.93448	11.871	3	0	Median	0.91005	0.86713	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1724100000	853870000	870250000	414170000	168090000	246080000	1121700000	574450000	547250000	188250000	111330000	76918000	0	0	0	57092	939	53775	347095;347096;347097;347098;347099;347100;347101;347102	468114;468115;468116;468117;468118;468119;468120;468121;468122;468123;468124;468125;468126	468121			13	
VVDRFVEFLK	1	Unmodified	1250.7023	0.70230842	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	2	1	65.212	64.556	3	0.00067347	53201	160511_QHF_FH_JSI9i_3	67.726	48.946			0.90506	0.92272	52.699	5	3	Median	1.1301	0.92272	NaN	1	0	Median	0.90506	1.0564	NaN	1	0	Median	1.4723	1.3843	81.647	2	2	Median	0.58249	0.6206	NaN	1	1	Median	291270000	132810000	158460000	62272000	24466000	37806000	63821000	33290000	30531000	116910000	50789000	66123000	48262000	24263000	23999000	57093	439	53776	347103;347104;347105;347106;347107;347108	468127;468128;468129;468130;468131;468132;468133;468134	468133			8	
VVDRWNEK	1	Unmodified	1044.5352	0.53524309	2840	Q4U2R6	MRPL51	39S ribosomal protein L51, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		3	0			3							1	1	1		13.129	12.577	3	0.045342	10059	160511_QHF_FH_JSI10i_3	24.03	9.3506			0.77609	0.82251	28.884	3	0	Median	0.77609	0.62899	NaN	1	0	Median	0.71034	0.82251	NaN	1	0	Median	1.2147	1.1203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	144800000	71323000	73474000	25820000	17577000	8242400	65581000	31678000	33903000	53396000	22068000	31329000	0	0	0	57094	2840	53777	347109;347110;347111	468135	468135			1	
VVDSLYNK	1	Unmodified	936.49165	0.49164694	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	2	1	2	23.854	23.135	2	0.0014474	19781	160511_QHF_FH_JSI9i_1	89.369	61.844			1.0314	1.0805	11.185	6	0	Median	1.3367	1.1138	NaN	1	0	Median	0.9534	1.149	22.716	2	0	Median	1.0649	1.0331	NaN	1	0	Median	0.99027	1.089	5.3993	2	0	Median	1755900000	734570000	1021300000	355040000	119850000	235190000	518360000	248200000	270150000	363940000	120740000	243200000	518520000	245770000	272740000	57095	109	53778	347112;347113;347114;347115;347116;347117	468136;468137;468138;468139;468140;468141;468142;468143;468144	468142			9	
VVDSLYNKAK	2	Acetyl (K)	1177.6343	0.63428844	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				2	1	1	46.383	36.398	2	2.9654E-12	21557	160513_QHF_FH_JSI11Kac_4	157.91	110.83			0.56832	0.56616	38.251	4	0	Linear	NaN	NaN	NaN	0	0	Median	1.0138	1.1964	3.2168	2	0	Median	0.55701	0.54487	NaN	1	0	Median	0.70544	0.76544	NaN	1	0	Median	29914000	18639000	11275000	0	0	0	9809600	4434600	5374900	11834000	8974700	2859700	8269800	5229500	3040300	57096	109	53779	347118;347119;347120;347121	468145;468146;468147;468148	468146	69		4	
VVDSMDALDK	1	Unmodified	1091.5169	0.51687542	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	36.934	36.323	2	2.3473E-05	32532	160511_QHF_FH_JSI11i_1	97.965	77.445			1.2856	1.4258	25.52	4	0	Median	1.0628	0.87005	NaN	1	0	Median	1.1876	1.3847	NaN	1	0	Median	1.547	1.482	NaN	1	0	Median	1.3916	1.4682	NaN	1	0	Median	563740000	239020000	324720000	123930000	46791000	77141000	148480000	59812000	88666000	149620000	69437000	80182000	141710000	62977000	78730000	57097	4871	53780	347122;347123;347124;347125	468149;468150;468151	468149			3	
VVDSMEDEVQR	0	Unmodified	1305.5871	0.58708025	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	27.41	26.82	2	0.00041739	23783	160511_QHF_FH_JSI10i_1	80.688	72.468			1.0009	1.0471	7.3416	3	3	Median	1.3492	1.1294	NaN	1	1	Median	0.88693	1.0471	NaN	1	1	Median	1.0009	0.97518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	319560000	174060000	145490000	78661000	33899000	44761000	144730000	84720000	60012000	96164000	55446000	40718000	0	0	0	57098	5502	53781	347126;347127;347128;347129;347130;347131	468152;468153;468154;468155;468156;468157	468155			6	
VVDSMEDEVQRR	0	Unmodified	1461.6882	0.68819127	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	2.25	0.433		3	1							1	1		2	23.852	23.065	2;3	1.422E-06	19912	160511_QHF_FH_JSI10i_2	92.943	76.806			0.77885	0.82348	13.741	4	3	Median	0.82429	0.70095	NaN	1	1	Median	0.74535	0.91687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76297	0.82348	14.097	2	1	Median	488310000	286160000	202140000	167950000	91967000	75980000	206230000	127160000	79070000	0	0	0	114120000	67033000	47092000	57099	5502	53782	347132;347133;347134;347135	468158;468159;468160;468161	468160			4	
VVDYSQFQESDDADEDYGR	0	Unmodified	2236.9033	0.90326525	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	51.932	51.436	2;3	9.7554E-297	46567	160511_QHF_FH_JSI11i_1	366.14	360.82			0.84001	0.8904	8.1186	6	0	Median	NaN	NaN	NaN	0	0	Median	0.76399	0.8904	0.66932	2	0	Median	0.91042	0.88949	7.4874	2	0	Median	0.90913	0.93553	15.484	2	0	Median	883310000	470970000	412330000	0	0	0	352790000	199800000	152990000	278880000	138800000	140080000	251630000	132370000	119260000	57100	4657	53783	347136;347137;347138;347139;347140;347141;347142	468162;468163;468164;468165;468166;468167;468168;468169;468170;468171;468172	468163			11	
VVDYSQFQESDDADEDYGRDSGPPTK	1	Unmodified	2919.2319	0.23186961	4657	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	24									9	5	5	5	51.833	51.114	3;4	3.5289E-82	45246	160511_QHF_FH_JSI10i_1	231.9	228.7			0.97228	0.95129	15.7	22	9	Median	1.2465	1.0118	10.229	7	3	Median	0.73311	0.84735	15.26	5	2	Median	0.91684	0.88298	22.886	5	3	Median	0.92628	0.97013	10.481	5	1	Median	4679600000	2425100000	2254500000	492530000	213150000	279380000	1692100000	1028200000	663890000	1117700000	560910000	556780000	1377300000	622820000	754470000	57101	4657	53784	347143;347144;347145;347146;347147;347148;347149;347150;347151;347152;347153;347154;347155;347156;347157;347158;347159;347160;347161;347162;347163;347164;347165;347166	468173;468174;468175;468176;468177;468178;468179;468180;468181;468182;468183;468184;468185;468186;468187;468188;468189;468190;468191;468192;468193;468194;468195;468196;468197;468198;468199;468200;468201;468202;468203;468204;468205;468206;468207;468208;468209;468210;468211;468212;468213	468195			38	
VVDYTTAK	1	Unmodified	895.4651	0.46509784	2020	P62820	RAB1A	Ras-related protein Rab-1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	2	2	16.812	14.092	2	0.015282	12115	160511_QHF_FH_JSI12i_1	50.607	28.836			0.90949	1.0108	27.13	6	2	Median	1.4916	1.2292	NaN	1	0	Median	0.73166	0.85181	NaN	1	0	Median	1.0107	0.99104	44.333	2	1	Median	0.88872	0.95908	31.628	2	1	Median	4228600000	2015800000	2212800000	772650000	293400000	479250000	1039400000	621610000	417780000	1274600000	589340000	685290000	1141900000	511440000	630480000	57102	2020	53785	347167;347168;347169;347170;347171;347172	468214;468215;468216;468217;468218;468219;468220;468221;468222	468216			9	
VVEDDEDDFPTTR	0	Unmodified	1536.658	0.65799658	5671	Q9Y5P4	COL4A3BP	Collagen type IV alpha-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	36.638	35.908	2	9.9456E-05	32169	160511_QHF_FH_JSI10i_1	93.821	85.596			0.97132	1.0266	16.024	5	2	Median	1.0134	0.82772	18.171	2	2	Median	0.91958	1.0928	NaN	1	0	Median	1.076	1.0266	NaN	1	0	Median	0.97132	1.0276	NaN	1	0	Median	168470000	93509000	74965000	52582000	28840000	23742000	36612000	23036000	13576000	38592000	21855000	16737000	40688000	19778000	20911000	57103	5671	53786	347173;347174;347175;347176;347177	468223;468224;468225;468226;468227;468228;468229	468227			7	
VVEDGILK	1	Unmodified	871.50148	0.50148335	1421	P35221	CTNNA1	Catenin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.504	31.9	2	0.054003	28769	160511_QHF_FH_JSI12i_1	36.395	15.836			0.84747	0.90538	30.307	4	0	Median	1.1196	0.9313	NaN	1	0	Median	0.79091	0.95272	NaN	1	0	Median	0.90807	0.88019	NaN	1	0	Median	0.49856	0.50415	NaN	1	0	Median	940170000	456510000	483660000	203420000	89077000	114340000	268930000	131870000	137070000	286010000	132800000	153210000	181800000	102760000	79043000	57104	1421	53787	347178;347179;347180;347181	468230;468231;468232	468230			3	
VVEDIEYLK	1	Unmodified	1106.5859	0.58594126	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		50.957	50.277	2	0.00097702	45323	160511_QHF_FH_JSI10i_1	82.426	49.163			1.1458	1.14	4.9519	3	3	Median	1.3385	1.117	NaN	1	1	Median	1.0361	1.2272	NaN	1	1	Median	1.1458	1.14	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	342570000	192130000	150430000	96850000	51142000	45708000	112250000	64429000	47819000	133470000	76561000	56908000	0	0	0	57105	675	53788	347182;347183;347184	468233;468234;468235	468234			3	
VVEEIRR	0	Unmodified	899.51886	0.51886475	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	1	By MS/MS	By matching			2	0		2								1	1			10.329	9.8046	3	0.0087304	7564	160511_QHF_FH_JSI9i_2	46.426	22.902			1.2033	1.2209	8.7383	2	0	Median	1.5516	1.2988	NaN	1	0	Median	0.9332	1.1478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	561110000	274360000	286760000	220900000	81004000	139900000	340210000	193360000	146860000	0	0	0	0	0	0	57106	1747	53789	347185;347186	468236	468236			1	
VVEGPAQAMSR	0	Unmodified	1143.5706	0.57064232	4360	Q9BQE5	APOL2	Apolipoprotein L2	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.946	24.687	2	0.010764	20608	160511_QHF_FH_JSI12i_2	46.462	28.022			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57107	4360	53790	347187	468237	468237			1	
VVEGSFVYK	1	Unmodified	1026.5386	0.53859714	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			38.201	37.831	2	0.0011469	33907	160511_QHF_FH_JSI10i_1	73.665	55.898			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57108	1368	53791	347188	468238	468238			1	
VVEHNIR	0	Unmodified	865.477	0.47699993	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								2	4	2	6.1741	6.0419	2;3	0.0044676	3634	160511_QHF_FH_JSI12i_3	57.281	35.15			0.87056	0.96464	12.867	4	0	Median	NaN	NaN	NaN	0	0	Median	0.84589	1.0445	NaN	1	0	Median	0.95316	0.93861	19.041	2	0	Median	0.88483	0.89086	NaN	1	0	Median	2008500000	442800000	1565700000	0	0	0	235420000	51211000	184210000	908970000	212390000	696590000	864100000	179210000	684900000	57109	110	53792	347189;347190;347191;347192;347193;347194;347195;347196	468239;468240;468241;468242;468243;468244;468245;468246;468247	468247			9	
VVEIAPAAHLDPQLR	0	Unmodified	1627.9046	0.90459006	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		8	2							3	2	2	3	60.968	60.053	2;3	3.6104E-07	53156	160511_QHF_FH_JSI10i_2	132.44	121.18			0.98456	1.1136	16.492	9	2	Median	1.3083	1.1136	18.841	3	1	Median	0.98456	1.219	NaN	1	0	Median	0.88225	0.89485	17.791	2	0	Median	0.83197	1.1266	10.912	3	1	Plateau	1777500000	845870000	931590000	293120000	113920000	179200000	363720000	212300000	151420000	696630000	332870000	363760000	423990000	186790000	237210000	57110	1002	53793	347197;347198;347199;347200;347201;347202;347203;347204;347205;347206	468248;468249;468250;468251;468252;468253;468254;468255;468256;468257;468258;468259;468260;468261;468262;468263	468261			16	
VVEIVDEK	1	Unmodified	929.50696	0.50696266	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	28.671	28.081	2	0.0013131	25118	160511_QHF_FH_JSI12i_1	107.01	69.914			0.88746	0.93439	12.848	4	4	Median	1.1811	0.97955	NaN	1	1	Median	0.857	1.0434	NaN	1	1	Median	0.91901	0.89131	NaN	1	1	Median	0.73648	0.77643	NaN	1	1	Median	971370000	549850000	421520000	192480000	94158000	98318000	285120000	167050000	118070000	272480000	174560000	97921000	221300000	114080000	107220000	57111	3132	53794	347207;347208;347209;347210;347211;347212;347213	468264;468265;468266;468267;468268;468269;468270	468266			7	
VVEIVKK	2	Unmodified	813.53239	0.53238955	318	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	35.372	35.244	3	0.060054	29937	160511_QHF_FH_JSI12i_3	22.131	3.0368			0.056409	0.061349	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.056409	0.061349	NaN	1	1	Median	6506400	6307900	198530	0	0	0	0	0	0	0	0	0	6506400	6307900	198530	57112	318	53795	347214	468271	468271			1	
VVELSYWEWLPLLK	1	Unmodified	1773.9705	0.97054436	3238	Q7L8L6	FASTKD5	FAST kinase domain-containing protein 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	98.578	89.151	2	4.3119E-57	48939	160513_QHF_FH_JSI12Kac_6	243.01	197.87			0.88361	0.88639	28.922	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1465	1.0875	NaN	1	0	Median	0.68102	0.72245	NaN	1	1	Median	577960000	309450000	268510000	0	0	0	0	0	0	230460000	113230000	117230000	347500000	196230000	151280000	57113	3238	53796	347215;347216	468272;468273	468273			2	
VVESPDFSK	1	Unmodified	1006.4971	0.49712625	5755	Q9Y6Y8	SEC23IP	SEC23-interacting protein	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	29.544	28.626	2	0.034013	25581	160511_QHF_FH_JSI12i_1	39.305	28.431			1.0542	0.96428	19.649	2	0	Median	1.029	0.8392	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.08	1.108	NaN	1	0	Median	181980000	85190000	96792000	83854000	36737000	47117000	0	0	0	0	0	0	98127000	48453000	49675000	57114	5755	53797	347217;347218	468274;468275	468274			2	
VVETEDAYK	1	Unmodified	1052.5026	0.50260556	2649	Q15286	RAB35	Ras-related protein Rab-35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	17.287	16.806	2	2.693E-05	13895	160511_QHF_FH_JSI9i_1	103.83	92.96			0.95758	0.91811	14.927	4	0	Median	1.1829	0.96176	NaN	1	0	Median	0.99908	1.1677	NaN	1	0	Median	0.91781	0.87645	NaN	1	0	Median	0.77928	0.83183	NaN	1	0	Median	1453100000	784390000	668660000	388990000	184320000	204670000	386120000	218090000	168030000	327010000	178180000	148820000	350940000	203790000	147140000	57115	2649	53798	347219;347220;347221;347222	468276;468277;468278;468279;468280;468281;468282	468281			7	
VVETELQEGATK	1	Unmodified	1302.6667	0.66671078	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	27.31	26.55	2	7.1603E-05	23020	160511_QHF_FH_JSI9i_1	106	93.777			1.0596	0.94333	30.159	4	3	Median	1.241	1.0159	31.104	2	2	Median	0.54534	0.64392	NaN	1	1	Median	1.1118	1.0914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	222290000	119680000	102610000	107030000	49416000	57610000	73465000	48536000	24929000	41796000	21728000	20068000	0	0	0	57116	3653	53799	347223;347224;347225;347226;347227	468283;468284;468285;468286;468287;468288	468287			6	
VVEVGSK	1	Unmodified	716.40685	0.40685468	1055	P14618	PKM	Pyruvate kinase PKM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	5.71	4	3	4		1	2	3	1		2	5	6	5	10.485	7.1301	2	0.0097642	6722	160511_QHF_FH_JSI11i_2	77.741	12.069			0.85733	0.88847	15.139	18	0	Median	1.4414	1.2488	8.3518	2	0	Median	0.79633	0.87852	11.396	5	0	Median	0.92092	0.92183	11.35	6	0	Median	0.75882	0.81066	8.6199	5	0	Median	60255000000	29381000000	30874000000	10450000000	4851900000	5597900000	17284000000	9033100000	8250800000	15826000000	8197700000	7628200000	16695000000	7298800000	9396600000	57117	1055	53800	347228;347229;347230;347231;347232;347233;347234;347235;347236;347237;347238;347239;347240;347241;347242;347243;347244;347245	468289;468290;468291;468292;468293;468294;468295;468296;468297;468298;468299;468300;468301;468302;468303;468304;468305;468306;468307;468308;468309;468310;468311	468304			23	
VVEVLAGHGHLYSR	0	Unmodified	1535.8209	0.82086043	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.97	6.41		3	19						14	11	9	8	8	39.752	35.675	2;3;4	4.2281E-17	29747	160511_QHF_FH_JSI10i_3	132.76	104.56			1.0151	1.0179	21.754	31	5	Median	1.2345	0.98873	13.015	9	0	Median	0.96714	1.1054	23.23	8	0	Median	0.99739	0.9272	16.675	8	3	Median	0.93434	0.95909	31.048	6	2	Median	7673900000	3434400000	4239500000	2690100000	932980000	1757100000	1679900000	700360000	979570000	1744000000	900070000	843980000	1559900000	901010000	658850000	57118	1650	53801	347246;347247;347248;347249;347250;347251;347252;347253;347254;347255;347256;347257;347258;347259;347260;347261;347262;347263;347264;347265;347266;347267;347268;347269;347270;347271;347272;347273;347274;347275;347276;347277;347278;347279;347280;347281	468312;468313;468314;468315;468316;468317;468318;468319;468320;468321;468322;468323;468324;468325;468326;468327;468328;468329;468330;468331;468332;468333;468334;468335;468336;468337;468338;468339;468340;468341;468342;468343;468344;468345;468346;468347;468348;468349;468350;468351;468352;468353;468354;468355;468356;468357;468358;468359;468360;468361;468362;468363;468364;468365;468366;468367;468368;468369;468370;468371;468372;468373;468374;468375;468376;468377;468378;468379;468380;468381	468327			69	
VVFAADGILWPDK	1	Unmodified	1429.7606	0.76055158	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	1	2	4	91.222	90.591	2;3	0.00020163	78198	160511_QHF_FH_JSI12i_2	150.94	132.16			1.1066	1.2438	40.989	7	7	Median	0.73225	0.64619	NaN	1	1	Median	0.73355	0.89687	NaN	1	1	Median	1.1322	1.1221	15.582	2	2	Median	1.2698	1.4255	34.624	3	3	Median	277160000	132860000	144300000	27790000	16643000	11147000	38312000	20907000	17405000	104210000	50430000	53778000	106850000	44882000	61970000	57119	140	53802	347282;347283;347284;347285;347286;347287;347288;347289	468382;468383;468384;468385;468386;468387;468388;468389	468383			8	
VVFDSAQR	0	Unmodified	920.47158	0.4715802	1040	P13798	APEH	Acylamino-acid-releasing enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	20.646	19.983	2	0.0012793	16337	160511_QHF_FH_JSI11i_2	91.626	56.802			0.8622	1.0135	17.596	5	0	Median	1.306	1.1495	NaN	1	0	Median	0.82871	1.0135	NaN	1	0	Median	0.96137	0.96183	31.647	2	0	Median	0.8622	0.96366	NaN	1	0	Median	711620000	352270000	359350000	127280000	58845000	68440000	128590000	56269000	72325000	289350000	159960000	129400000	166390000	77195000	89193000	57120	1040	53803	347290;347291;347292;347293;347294	468390;468391;468392;468393;468394	468393			5	
VVFEQTK	1	Unmodified	849.45962	0.45961853	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.32	4	5	3			3	3	4	2	6	5	7	6	22.649	17.555	2	0.0028642	16173	160511_QHF_FH_JSI11i_1	108.24	82.129			1.0073	0.99204	17.315	23	1	Median	1.1811	0.96952	18.523	6	0	Median	0.72796	0.86257	23.2	5	0	Median	1.011	0.98747	16.398	6	1	Median	0.9299	1.0094	14.679	6	0	Median	39876000000	19442000000	20434000000	8903300000	3940700000	4962700000	9447300000	4927400000	4519900000	12989000000	6294600000	6694000000	8536800000	4279600000	4257200000	57121	1908	53804	347295;347296;347297;347298;347299;347300;347301;347302;347303;347304;347305;347306;347307;347308;347309;347310;347311;347312;347313;347314;347315;347316;347317;347318	468395;468396;468397;468398;468399;468400;468401;468402;468403;468404;468405;468406;468407;468408;468409;468410;468411;468412;468413;468414;468415;468416;468417;468418;468419;468420;468421;468422;468423;468424	468399			30	
VVFPSGEVVEQK	1	Unmodified	1316.6976	0.69761697	4849	Q9HC36	RNMTL1	rRNA methyltransferase 3, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching			1	0	2									1	1			51.612	50.805	2	0.0019536	45185	160511_QHF_FH_JSI9i_1	58.699	39.919			0.86499	0.85735	8.2084	2	0	Median	1.0752	0.90858	NaN	1	0	Median	0.6959	0.809	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	71515000	40238000	31277000	30165000	15662000	14503000	41350000	24577000	16774000	0	0	0	0	0	0	57122	4849	53805	347319;347320	468425	468425			1	
VVFQEFR	0	Unmodified	923.4865	0.48650199	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							2	2	2	3	45.54	44.765	2	0.002495	38224	160511_QHF_FH_JSI12i_3	118.01	96.857			0.92735	1.0317	17.107	6	1	Median	NaN	NaN	NaN	0	0	Median	0.87794	1.0387	11.523	2	0	Median	1.0212	1.0004	14.928	2	0	Median	0.99882	1.0457	32.937	2	1	Median	8034700000	4155800000	3878900000	0	0	0	1896800000	944450000	952380000	3249800000	1586000000	1663800000	2888100000	1625400000	1262700000	57123	1436	53806	347321;347322;347323;347324;347325;347326;347327;347328;347329	468426;468427;468428;468429;468430;468431;468432;468433;468434;468435;468436;468437	468437			12	
VVFQVPDWLHHLLMGTR	0	Unmodified	2047.0826	0.082571198	5684	Q9Y5W7	SNX14	Sorting nexin-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		96.34	88.275	4	0.0003935	52190	160513_QHF_FH_JSI10Kac_6	61.815	52.066			1.4074	1.2191	23.199	3	0	Median	1.4074	1.2191	NaN	1	0	Median	0.8098	0.94188	NaN	1	0	Median	1.633	1.4964	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	211610000	101340000	110270000	37924000	14481000	23443000	116630000	65025000	51603000	57058000	21833000	35226000	0	0	0	57124	5684	53807	347330;347331;347332	468438;468439	468439			1	
VVFRDPYR	0	Unmodified	1050.5611	0.56106391	2039	P62917	RPL8	60S ribosomal protein L8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		6.43	6.07		2	3						2	3	3	1		34.45	31.239	3	0.013135	25393	160511_QHF_FH_JSI9i_3	41.448	27.241			1.1761	1.1754	19.14	7	2	Median	1.2449	1.0082	20.955	3	1	Median	0.99173	1.1754	15.745	3	1	Median	1.586	1.458	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	995930000	482200000	513730000	342350000	149210000	193140000	503140000	268860000	234280000	150440000	64129000	86309000	0	0	0	57125	2039	53808	347333;347334;347335;347336;347337;347338;347339	468440;468441;468442;468443;468444;468445	468442			6	
VVFSTGPQSTK	1	Unmodified	1149.603	0.60298831	438	O60678	PRMT3	Protein arginine N-methyltransferase 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	28.354	27.783	2	7.1923E-05	23303	160511_QHF_FH_JSI12i_3	91.867	60.793			0.93843	1.0339	12.405	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84575	0.84837	NaN	1	0	Median	0.93843	1.0321	7.1748	2	0	Median	128040000	56247000	71791000	0	0	0	0	0	0	33884000	16624000	17261000	94153000	39623000	54530000	57126	438	53809	347340;347341;347342;347343	468446;468447	468447			2	
VVFVFGPDK	1	Unmodified	1006.5488	0.54876789	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.68	6.48	4	4	4			1	4	4	4	6	6	6	7	67.574	62.08	2	4.2006E-07	32196	160513_QHF_FH_JSI10Kac_5	136.16	117.42			1.0571	1.0622	11.977	25	0	Median	1.1833	1.0213	16.024	6	0	Median	0.8044	0.9589	9.6442	6	0	Median	1.1311	1.088	11.167	6	0	Median	1.0571	1.1272	5.4711	7	0	Median	26260000000	13135000000	13125000000	4841600000	2313400000	2528200000	6243900000	3340300000	2903700000	8541500000	4149100000	4392400000	6633000000	3332100000	3300800000	57127	1333	53810	347344;347345;347346;347347;347348;347349;347350;347351;347352;347353;347354;347355;347356;347357;347358;347359;347360;347361;347362;347363;347364;347365;347366;347367;347368	468448;468449;468450;468451;468452;468453;468454;468455;468456;468457;468458;468459;468460;468461;468462;468463;468464;468465;468466;468467;468468;468469;468470;468471;468472;468473;468474;468475;468476;468477;468478;468479;468480;468481;468482;468483;468484;468485;468486;468487;468488;468489;468490;468491	468483			44	
VVFVFGPDKK	2	Unmodified	1134.6437	0.64373091	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.4	6.59		6	8					2	9	7	7	6	5	56.594	51.88	2;3	7.4305E-10	45295	160511_QHF_FH_JSI11i_3	144.09	135.18			0.98356	0.9955	25.418	25	6	Median	1.0694	0.90462	20.686	7	2	Median	0.93148	1.0964	29.372	7	2	Median	1.1001	1.0701	22.935	6	2	Median	0.95181	0.9928	9.9373	5	0	Median	11485000000	5342800000	6142200000	2420900000	1126700000	1294100000	2248600000	1146100000	1102500000	2745700000	1190000000	1555700000	4069800000	1880000000	2189900000	57128	1333	53811	347369;347370;347371;347372;347373;347374;347375;347376;347377;347378;347379;347380;347381;347382;347383;347384;347385;347386;347387;347388;347389;347390;347391;347392;347393	468492;468493;468494;468495;468496;468497;468498;468499;468500;468501;468502;468503;468504;468505;468506;468507;468508;468509;468510;468511;468512;468513;468514;468515;468516;468517;468518;468519;468520;468521;468522;468523;468524;468525;468526;468527;468528;468529;468530;468531;468532;468533;468534;468535;468536;468537;468538;468539;468540;468541;468542;468543;468544;468545;468546;468547;468548	468496			56	
VVFVFGPDKK	2	Acetyl (K)	1176.6543	0.6542956	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								2	2		1	2	1	76.996	67.038	2	6.3097E-05	35651	160513_QHF_FH_JSI11Kac_5	110.87	76.064			0.27323	0.26903	86.019	4	1	Median	NaN	NaN	NaN	0	0	Median	1.0573	1.2645	NaN	1	0	Median	0.27323	0.26903	9.9767	2	0	Median	0.16986	0.18247	NaN	1	1	Median	131010000	101100000	29914000	0	0	0	8188300	3706000	4482300	116770000	91994000	24777000	6053800	5399100	654690	57129	1333	53811	347394;347395;347396;347397	468549;468550;468551;468552;468553;468554;468555	468550	1262		6	
VVFVGNFLR	0	Unmodified	1049.6022	0.60220045	4801	Q9H999;Q8TE04	PANK3;PANK1	Pantothenate kinase 3;Pantothenate kinase 1	yes	no	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		79.606	72.075	2	0.0081126	39872	160513_QHF_FH_JSI10Kac_6	70.912	49.612			0.90169	0.96073	13.619	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90271	1.0578	NaN	1	0	Median	0.90067	0.87252	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114550000	63677000	50870000	0	0	0	68803000	39655000	29148000	45743000	24022000	21722000	0	0	0	57130	4801	53812	347398;347399	468556;468557;468558;468559	468559			4	
VVFWLHDSFPK	1	Unmodified	1373.7132	0.71320746	2201	Q03111	MLLT1	Protein ENL	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	77.378	72.807	3	5.3779E-05	63462	160511_QHF_FH_JSI10i_3	79.82	73.091			1.109	0.98002	12.622	8	1	Median	1.1712	0.972	1.5557	2	0	Median	0.81302	0.94369	4.9499	2	0	Median	1.1269	1.0609	8.4747	2	1	Median	1.1008	1.1417	23.821	2	0	Median	780230000	408800000	371430000	162200000	83873000	78330000	202610000	105540000	97069000	230980000	115480000	115510000	184440000	103910000	80526000	57131	2201	53813	347400;347401;347402;347403;347404;347405;347406;347407	468560;468561;468562;468563;468564;468565;468566;468567;468568;468569;468570;468571;468572	468562			13	
VVGAMQLYSVDR	0	Unmodified	1336.6809	0.68092105	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0		By MS/MS			3	0			1								1			56.933	55.392	2	0.015565	46309	160511_QHF_FH_JSI10i_3	51.436	19.116			0.74338	0.86093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74338	0.86093	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65551000	40957000	24594000	0	0	0	65551000	40957000	24594000	0	0	0	0	0	0	57132	1807;2155	53814	347408	468573	468573			1	
VVGAMQLYSVDRK	1	Unmodified	1464.7759	0.77588407	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.28		3	8					1	5	5	6	4	2	50.023	45.918	2;3	5.9243E-13	38303	160511_QHF_FH_JSI10i_3	123.28	109.04			0.9693	0.9445	24.654	16	1	Median	0.97882	0.77784	16.896	5	0	Median	0.93816	1.1522	19.476	5	0	Median	1.064	1.0275	33.34	4	1	Median	0.7706	0.79258	12.602	2	0	Median	3483200000	1741600000	1741700000	1471700000	789520000	682170000	1076600000	526160000	550460000	734240000	317680000	416560000	200690000	108220000	92471000	57133	1807;2155	53815	347409;347410;347411;347412;347413;347414;347415;347416;347417;347418;347419;347420;347421;347422;347423;347424;347425	468574;468575;468576;468577;468578;468579;468580;468581;468582;468583;468584;468585;468586;468587;468588;468589;468590;468591;468592;468593;468594;468595;468596;468597;468598	468582			23	
VVGAMQLYSVDRK	1	Oxidation (M)	1480.7708	0.77079869	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	1	1	By MS/MS	By MS/MS	By MS/MS		5	4.47			5					1		3	1	2		39.015	35.724	3	1.5659E-05	29885	160511_QHF_FH_JSI10i_3	77.22	55.969			0.84814	0.68633	21.745	4	1	Linear	0.89542	0.72381	23.707	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0692	0.97602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	371240000	180020000	191220000	300420000	149170000	151250000	0	0	0	70824000	30848000	39977000	0	0	0	57134	1807;2155	53815	347426;347427;347428;347429;347430;347431	468599;468600;468601;468602;468603;468604;468605	468601		1500	7	
VVGAQSLK	1	Unmodified	800.4756	0.47560295	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.9	3.75	4	4	1				1			2	2	3	3	16.403	15.201	2	0.0099826	12916	160511_QHF_FH_JSI12i_1	55.531	10.838			1.0576	1.0831	12.69	10	0	Median	1.2906	1.0649	1.127	2	0	Median	0.93539	1.1353	1.3767	2	0	Median	0.95377	0.9833	6.0368	3	0	Plateau	1.0753	1.0928	24.166	3	0	Median	5203500000	2577600000	2626000000	804330000	356140000	448190000	1284400000	709220000	575200000	1549600000	611790000	937810000	1565200000	900410000	664790000	57135	1764	53816	347432;347433;347434;347435;347436;347437;347438;347439;347440;347441	468606;468607;468608;468609;468610;468611;468612;468613;468614	468607			9	
VVGAVGSDEK	1	Unmodified	959.49238	0.49237523	2581	Q14914	PTGR1	Prostaglandin reductase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.12	6.13	4					3	1			1	2	3	2	13.578	9.6972	2	1.562E-09	8761	160511_QHF_FH_JSI11i_1	133.57	87.856			1.0069	1.0265	24.065	8	2	Median	1.323	1.0836	NaN	1	0	Median	0.93282	1.1052	49.231	2	1	Median	0.99599	0.95592	19.863	3	1	Plateau	0.85663	0.93005	21.398	2	0	Median	3817700000	1863500000	1954200000	830300000	362410000	467890000	875850000	384040000	491800000	989130000	539750000	449380000	1122500000	577290000	545160000	57136	2581	53817	347442;347443;347444;347445;347446;347447;347448;347449	468615;468616;468617;468618;468619;468620;468621;468622;468623;468624;468625	468615			11	
VVGAVIDQGLITR	0	Unmodified	1339.7823	0.78234966	88	E9PRG8	C11orf98	Uncharacterized protein C11orf98	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	63.144	62.344	2	0.00013948	55280	160511_QHF_FH_JSI10i_2	84.687	55.02			0.94014	0.9693	10.345	5	0	Median	1.192	1.0184	NaN	1	0	Median	0.85341	1.0168	6.761	2	0	Median	0.95031	0.96033	NaN	1	0	Median	0.72848	0.8117	NaN	1	0	Median	524210000	265010000	259190000	111800000	49648000	62153000	137360000	64269000	73088000	168280000	87385000	80892000	106770000	63712000	43061000	57137	88	53818	347450;347451;347452;347453;347454	468626;468627;468628	468628			3	
VVGCSCVVVK	1	Unmodified	1105.5624	0.56238582	1258	P25398	RPS12	40S ribosomal protein S12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	27.518	26.776	2	1.4221E-05	23467	160511_QHF_FH_JSI11i_1	101.25	89.484			0.8324	0.94819	43.992	8	1	Median	1.0218	0.85982	35.881	2	0	Median	0.80008	0.94819	8.4822	2	0	Median	0.69853	0.69713	5.5984	2	0	Median	1.5601	1.6801	60.555	2	1	Median	1590800000	800170000	790580000	286730000	123340000	163390000	506800000	267440000	239370000	457600000	270200000	187410000	339620000	139200000	200420000	57138	1258	53819	347455;347456;347457;347458;347459;347460;347461;347462	468629;468630;468631;468632;468633;468634;468635;468636;468637;468638;468639;468640	468629			12	
VVGDRENGSDNLPSSAGSGDK	1	Unmodified	2059.9407	0.94065381	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		20.349	19.835	3	2.7623E-06	16720	160511_QHF_FH_JSI11i_3	73.21	64.61			0.86876	1.0519	14.434	3	0	Median	1.2232	1.0642	NaN	1	0	Median	0.85899	1.0519	NaN	1	0	Median	0.86876	0.82415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105980000	62086000	43890000	24413000	11498000	12914000	22691000	12754000	9937300	58872000	37834000	21038000	0	0	0	57139	329	53820	347463;347464;347465;347466	468641;468642;468643;468644;468645;468646;468647	468641			7	
VVGDRENGSDNLPSSAGSGDKPLSDPAPF	1	Unmodified	2884.3475	0.34750849	329	O43399	TPD52L2	Tumor protein D54	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.748	4	4	2							2	2	3	3	61.047	60.398	3	2.1007E-11	55157	160511_QHF_FH_JSI12i_1	82.849	72.338			0.94644	0.9999	8.6529	10	0	Median	1.1048	0.9368	14.613	2	0	Median	0.864	1.0334	5.0672	2	0	Median	0.99148	0.95309	10.558	3	0	Median	0.90953	1.0027	7.1818	3	0	Median	1221300000	603970000	617370000	208650000	97665000	110990000	278950000	158210000	120740000	441110000	206170000	234930000	292640000	141930000	150710000	57140	329	53821	347467;347468;347469;347470;347471;347472;347473;347474;347475;347476	468648;468649;468650;468651;468652;468653;468654;468655;468656;468657;468658;468659;468660;468661;468662;468663;468664;468665;468666;468667;468668;468669;468670;468671;468672;468673	468657			26	
VVGDVAYDEAK	1	Unmodified	1164.5663	0.56626845	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				2	1	1	2	27.996	23.212	2	5.5897E-07	5916	160513_QHF_FH_JSI9Kac_3	107.95	82.058			0.98512	0.90657	22.787	6	1	Median	0.98512	0.79799	3.3648	2	0	Median	0.54365	0.64994	NaN	1	0	Median	1.0592	1.033	NaN	1	0	Median	1.0267	1.1074	13.627	2	1	Median	2983100000	1538600000	1444500000	780580000	354580000	426000000	706430000	397400000	309030000	771550000	440380000	331170000	724570000	346230000	378330000	57141	1004	53822	347477;347478;347479;347480;347481;347482	468674;468675;468676;468677;468678;468679;468680;468681;468682;468683	468680			10	
VVGFHVLGPNAGEVTQGFAAALK	1	Unmodified	2281.2219	0.22190145	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.23	5.09		3	15						4	7	5	5	5	92.316	90.32	2;3;4	3.3747E-107	43963	160513_QHF_FH_JSI10Kac_6	237.15	212.55			0.90386	0.90251	17.169	21	4	Median	1.3306	1.0647	14.355	7	4	Median	0.88419	1.0541	3.9972	5	0	Median	0.86303	0.80866	11.602	5	0	Median	0.79461	0.82967	11.376	4	0	Median	9182500000	4358100000	4824400000	2825500000	1255200000	1570200000	2027600000	987670000	1039900000	2338800000	1119600000	1219200000	1990600000	995500000	995090000	57142	2778	53823	347483;347484;347485;347486;347487;347488;347489;347490;347491;347492;347493;347494;347495;347496;347497;347498;347499;347500;347501;347502;347503;347504	468684;468685;468686;468687;468688;468689;468690;468691;468692;468693;468694;468695;468696;468697;468698;468699;468700;468701;468702;468703;468704;468705;468706;468707;468708;468709;468710;468711;468712;468713;468714;468715;468716;468717;468718;468719;468720;468721;468722;468723;468724;468725;468726;468727;468728;468729;468730;468731;468732;468733;468734;468735;468736;468737;468738;468739;468740;468741;468742;468743;468744;468745	468745			62	
VVGGLLSAHLLSK	1	Unmodified	1292.7816	0.78162138	4465	Q9BV94	EDEM2	ER degradation-enhancing alpha-mannosidase-like protein 2	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			65.565	64.067	3	0.045046	53700	160511_QHF_FH_JSI10i_3	28.283	21.847			1.42	1.6234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.42	1.6234	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35462000	18806000	16656000	0	0	0	35462000	18806000	16656000	0	0	0	0	0	0	57143	4465	53824	347505	468746	468746			1	
VVGIHMQGLGCDEMLQGFAVAVK	1	Unmodified	2458.2171	0.21709212	765	P00390	GSR	Glutathione reductase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	97.063	97.079	3	3.4597E-05	84117	160511_QHF_FH_JSI12i_3	54.668	46.38			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12874000	12874000	0	0	0	0	0	0	0	0	0	0	12874000	12874000	0	57144	765	53825	347506	468747	468747			1	
VVGLYGFMLSISPR	0	Unmodified	1537.8327	0.83267067	2212	Q03519	TAP2	Antigen peptide transporter 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.191	87.471	2	2.6629E-07	50137	160513_QHF_FH_JSI10Kac_6	115.29	90.07			0.62201	0.732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62201	0.732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102800000	81149000	21653000	0	0	0	102800000	81149000	21653000	0	0	0	0	0	0	57145	2212	53826	347507	468748	468748			1	
VVGPQQLHSETNER	0	Unmodified	1592.7907	0.79068251	4395	Q9BSF4	C19orf52	Uncharacterized protein C19orf52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	21.198	20.596	3	3.9382E-05	17364	160511_QHF_FH_JSI11i_3	82.102	70.333			1.0603	1.0362	17.796	5	1	Median	1.2716	1.0926	NaN	1	0	Median	0.82405	0.98679	34.146	2	1	Median	1.1139	1.0362	NaN	1	0	Median	0.95338	0.96386	NaN	1	0	Median	219630000	111580000	108050000	38069000	12694000	25376000	66291000	39164000	27127000	78791000	38148000	40643000	36480000	21572000	14907000	57146	4395	53827	347508;347509;347510;347511;347512	468749;468750;468751;468752;468753;468754;468755	468750			7	
VVGRPQPQLQYVDALGYVSLFPLLLR	0	Unmodified	2940.6589	0.65893405	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			98.2	90.773	3	3.8497E-34	51226	160513_QHF_FH_JSI9Kac_6	152.35	138.62			1.0001	1.004	5.3964	2	0	Median	1.2217	1.043	NaN	1	0	Median	0.81876	0.96641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	369030000	194000000	175030000	120880000	43715000	77164000	248150000	150290000	97866000	0	0	0	0	0	0	57147	2466	53828	347513;347514	468756;468757	468756			2	
VVGSEFVQK	1	Unmodified	991.53385	0.53384611	1567	P43686	PSMC4	26S protease regulatory subunit 6B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.99	4	4	1				1	1		2	2	4	3	32.63	30.022	2	0.00082487	27124	160511_QHF_FH_JSI12i_1	78.377	42.191			0.94014	0.96996	19.582	10	2	Median	0.87484	0.72798	7.2895	2	1	Median	0.84296	1.0053	3.8643	2	0	Median	0.94014	0.94665	13.096	4	0	Median	1.1241	1.2179	12.757	2	1	Median	2663300000	1345200000	1318100000	327910000	161230000	166670000	733070000	368800000	364260000	1023200000	522300000	500890000	579140000	292910000	286230000	57148	1567	53829	347515;347516;347517;347518;347519;347520;347521;347522;347523;347524;347525	468758;468759;468760;468761;468762;468763;468764;468765;468766;468767	468761			10	
VVGSELIQK	1	Unmodified	971.56515	0.56514624	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	3	2	37.364	34.706	2	3.1093E-06	29584	160511_QHF_FH_JSI12i_2	124.08	68.069			1.088	1.0979	15.904	10	0	Median	1.2445	1.062	7.5704	2	0	Median	0.86507	1.0204	11.34	3	0	Median	1.1154	1.1459	16.132	3	0	Median	1.2316	1.3267	17.397	2	0	Median	2470000000	1229600000	1240400000	425780000	168900000	256880000	655470000	366370000	289110000	774190000	396130000	378060000	614570000	298200000	316370000	57149	1983	53830	347526;347527;347528;347529;347530;347531;347532;347533;347534;347535	468768;468769;468770;468771;468772;468773;468774;468775;468776;468777;468778;468779;468780;468781;468782;468783	468771			16	
VVGSELIQKYLGDGPK	2	Acetyl (K)	1743.9407	0.94070079	1983	P62191	PSMC1	26S protease regulatory subunit 4	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		86.675	77.351	3	0.00049174	43019	160513_QHF_FH_JSI11Kac_6	65.811	43.336			0.53116	0.52541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53116	0.52541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	33821000	22828000	10993000	0	0	0	0	0	0	33821000	22828000	10993000	0	0	0	57150	1983	53831	347536	468784	468784	2005		1	
VVGTGTSLALSSLLSLLLFAGMQMYSR	0	2 Oxidation (M)	2846.4922	0.49218758	3556	Q8N6L1	KRTCAP2	Keratinocyte-associated protein 2	yes	yes	0	0	2	0		By MS/MS			16	0									1		1			103.23	97.512	3	3.4186E-14	57714	160513_QHF_FH_JSI10Kac_6	103.63	92.109			0.95338	1.1465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95338	1.1465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	149430000	72240000	77188000	0	0	0	149430000	72240000	77188000	0	0	0	0	0	0	57151	3556	53832	347537	468785	468785		2266;2267	1	
VVGTGTSLALSSLLSLLLFAGMQMYSR	0	Oxidation (M)	2830.4973	0.49727295	3556	Q8N6L1	KRTCAP2	Keratinocyte-associated protein 2	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			104.6	98.88	3	2.7218E-08	58552	160513_QHF_FH_JSI10Kac_6	97.94	84.21			0.291	0.34257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.291	0.34257	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35887000	30911000	4976100	0	0	0	35887000	30911000	4976100	0	0	0	0	0	0	57152	3556	53832	347538	468786	468786		2266;2267	1	
VVGTPEVLR	0	Unmodified	968.56548	0.56548059	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		37.843	37.099	2	0.023873	32300	160511_QHF_FH_JSI9i_2	49.423	30.692			0.46168	0.42741	42.581	2	2	Median	0.37082	0.31629	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5748	0.57757	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	355140000	254470000	100660000	156270000	119630000	36639000	0	0	0	198870000	134840000	64024000	0	0	0	57153	5163	53833	347539;347540	468787;468788	468787			2	
VVGVLLGSWQK	1	Unmodified	1184.6917	0.69174374	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	2	3	3	2	74.771	70.011	2	3.8352E-07	58821	160511_QHF_FH_JSI9i_3	118.18	107.03			1.31	1.2304	62.55	10	7	Median	1.2412	1.0213	18.331	2	0	Median	0.93289	1.0976	73.785	3	2	Median	1.4715	1.3778	98.566	3	3	Median	1.5296	1.5868	27.948	2	2	Median	1621800000	779830000	841940000	398860000	182580000	216280000	477860000	247270000	230590000	530010000	259620000	270390000	215040000	90356000	124680000	57154	1748	53834	347541;347542;347543;347544;347545;347546;347547;347548;347549;347550	468789;468790;468791;468792;468793;468794;468795;468796;468797;468798;468799	468795			10	
VVHAWWGIH	0	Unmodified	1103.5665	0.56648364	656	O95210	STBD1	Starch-binding domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	62.255	52.867	3	1.6425E-05	28885	160513_QHF_FH_JSI10Kac_6	95.62	94.209			1.1817	1.1131	20.509	5	0	Median	1.2666	1.0316	NaN	1	0	Median	0.94537	1.1131	NaN	1	0	Median	1.1817	1.1331	NaN	1	0	Median	1.0376	1.1528	39.963	2	0	Median	66415000	33166000	33249000	15828000	7701400	8126800	30087000	15636000	14451000	10719000	4821400	5897400	9780300	5007100	4773200	57155	656	53835	347551;347552;347553;347554;347555	468800;468801;468802;468803;468804;468805;468806;468807	468807			8	
VVHFAEPGAGTK	1	Unmodified	1211.6299	0.62987176	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	23.619	23.601	3	0.011785	19449	160511_QHF_FH_JSI12i_3	43.382	36.18			1.2185	1.2244	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2185	1.2244	NaN	1	1	Median	94083000	42015000	52068000	0	0	0	0	0	0	0	0	0	94083000	42015000	52068000	57156	3858	53836	347556	468808	468808			1	
VVHIIQAR	0	Unmodified	934.57123	0.57123467	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By matching		By matching	16	0									3	1	1		1	26.48	18.303	3	0.041672	10557	160513_QHF_FH_JSI9Kac_6	39.298	35.89			0.90479	1.0174	4.2341	3	0	Median	1.3086	1.0891	NaN	1	0	Median	0.88624	1.0174	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90479	1.0077	NaN	1	0	Median	21712000	11609000	10103000	5260600	2637600	2623000	13340000	7077200	6263100	0	0	0	3110700	1894000	1216800	57157	1259	53837	347557;347558;347559	468809	468809			0	
VVHIMDFQR	0	Oxidation (M)	1159.5808	0.58081308	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	1	2	2	31.866	29.938	2;3	0.00094927	24455	160511_QHF_FH_JSI9i_3	60.398	60.398			1.1619	0.96246	16.302	7	2	Median	1.1729	0.95664	0.85764	2	0	Median	0.97234	1.0899	NaN	1	0	Median	1.0982	1.0218	23.81	2	1	Median	1.0549	1.1156	27.585	2	1	Median	767620000	395470000	372150000	298800000	148470000	150330000	132990000	70997000	61994000	206760000	104880000	101890000	129060000	71129000	57932000	57158	1556	53838	347560;347561;347562;347563;347564;347565;347566	468810;468811;468812;468813;468814;468815;468816;468817;468818;468819	468815		1226	10	
VVHIMDFQR	0	Unmodified	1143.5859	0.58589846	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		4	8						8	5	5	5	5	48.288	44.017	2;3	7.8653E-12	36806	160511_QHF_FH_JSI10i_3	138.4	129.04			0.83952	0.93026	13.814	20	0	Median	1.1816	0.9801	18.646	5	0	Median	0.818	0.93759	7.2651	5	0	Median	1.0327	0.97582	6.5814	5	0	Median	0.75104	0.78837	10.728	5	0	Median	13220000000	6685700000	6534500000	3108100000	1385200000	1722900000	2791900000	1664900000	1127000000	4403400000	2157700000	2245800000	2916900000	1478000000	1438900000	57159	1556	53838	347567;347568;347569;347570;347571;347572;347573;347574;347575;347576;347577;347578;347579;347580;347581;347582;347583;347584;347585;347586	468820;468821;468822;468823;468824;468825;468826;468827;468828;468829;468830;468831;468832;468833;468834;468835;468836;468837;468838;468839;468840;468841;468842;468843;468844;468845;468846;468847;468848;468849;468850;468851;468852;468853;468854;468855;468856	468825			37	
VVHLLNDQHLGVVTAATSLITTLAQK	1	Unmodified	2741.544	0.54396387	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.6	5.2			4						1	3	2			101.8	99.876	3;4	2.6504E-16	85497	160511_QHF_FH_JSI10i_3	116.08	109.21			1.0394	0.88559	15.694	5	1	Median	1.0637	0.92588	2.4558	3	0	Plateau	0.62239	0.7223	18.082	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	201520000	112810000	88704000	124020000	66359000	57660000	77499000	46454000	31044000	0	0	0	0	0	0	57160	635	53839	347587;347588;347589;347590;347591	468857;468858;468859;468860;468861;468862;468863;468864;468865;468866;468867;468868	468860			12	
VVHLSQEINHLQK	1	Unmodified	1543.8471	0.84707518	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	33.973	33.918	4	0.0015896	29661	160511_QHF_FH_JSI11i_3	59.116	49.317			0.075478	0.073548	11.896	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.071503	0.067614	NaN	1	1	Median	0.079673	0.080002	NaN	1	1	Median	427170000	396070000	31105000	0	0	0	0	0	0	265400000	251760000	13645000	161770000	144310000	17460000	57161	4932	53840	347592;347593	468869;468870	468869			2	
VVHSYEELEENYTR	0	Unmodified	1766.8111	0.81114318	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.08		8	3						4	3	3	4	5	44.485	41.452	2;3	9.2783E-11	35664	160511_QHF_FH_JSI12i_2	151.74	143.39			1.1487	1.2422	13.704	15	1	Median	1.4984	1.3779	4.664	3	0	Plateau	1.0789	1.3404	12.087	3	0	Plateau	1.1706	1.1431	12.494	4	1	Median	1.0235	1.1186	15.978	5	0	Median	1340200000	616310000	723840000	151740000	61632000	90111000	227570000	101270000	126290000	466340000	231100000	235240000	494490000	222300000	272200000	57162	1002	53841	347594;347595;347596;347597;347598;347599;347600;347601;347602;347603;347604;347605;347606;347607;347608	468871;468872;468873;468874;468875;468876;468877;468878;468879;468880;468881;468882;468883;468884;468885;468886;468887;468888;468889;468890;468891;468892;468893;468894;468895;468896	468874			26	
VVHTILHQTAK	1	Unmodified	1245.7194	0.71935547	4140	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	3	2	1	17.729	12.998	2;3	0.00015016	10131	160511_QHF_FH_JSI9i_3	69.554	64.052			1.1927	1.1005	37.994	7	0	Median	1.5576	1.2927	18.242	3	0	Median	1.3485	1.5799	77.53	2	0	Median	1.0982	1.1005	NaN	1	0	Median	0.91742	0.97653	NaN	1	0	Median	118880000	50942000	67940000	73758000	32055000	41703000	31252000	11962000	19291000	7133400	3549100	3584400	6738900	3376900	3362000	57163	4140	53842	347609;347610;347611;347612;347613;347614;347615;347616;347617	468897;468898;468899;468900;468901;468902;468903;468904;468905;468906	468901			9	
VVHVNGYGK	1	Unmodified	971.51886	0.51886475	935	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			7								2	3	2	12.527	12.301	2;3	1.3776E-06	9797	160511_QHF_FH_JSI10i_3	114.28	103.57			1.1279	1.1675	35.645	6	1	Median	NaN	NaN	NaN	0	0	Median	0.92361	1.0599	6.2262	2	0	Median	2.0082	1.8978	46.512	2	1	Median	1.1279	1.1395	10.884	2	0	Median	2804400000	998850000	1805600000	0	0	0	460120000	217290000	242830000	960680000	306970000	653700000	1383600000	474580000	909030000	57164	935	53843	347618;347619;347620;347621;347622;347623;347624	468907;468908;468909;468910;468911;468912;468913;468914;468915;468916	468911			10	
VVHWYFSQLDSNSSNDINKR	1	Unmodified	2408.1509	0.15092135	4718	Q9H4F8	SMOC1	SPARC-related modular calcium-binding protein 1	yes	yes	0	0	0	1				By MS/MS	16	0									1				1	69.756	59.989	4	0.046119	31477	160513_QHF_FH_JSI12Kac_6	28.202	20.21			0.46761	0.50798	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46761	0.50798	NaN	1	1	Median	12132000	5883200	6249100	0	0	0	0	0	0	0	0	0	12132000	5883200	6249100	57165	4718	53844	347625	468917	468917			1	
VVIDAFR	0	Unmodified	818.46504	0.46503826	144	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	45.979	45.286	2	0.0042289	38766	160511_QHF_FH_JSI12i_2	99.384	68.715			0.98707	0.91084	16.756	6	1	Median	1.0919	0.93663	NaN	1	0	Median	0.67387	0.83487	NaN	1	0	Median	0.98707	0.95923	11.269	2	1	Median	0.9303	0.98003	33.062	2	0	Median	1896500000	985520000	910940000	296840000	129100000	167740000	419230000	230730000	188500000	690120000	370530000	319590000	490270000	255170000	235100000	57166	144	53845	347626;347627;347628;347629;347630;347631	468918;468919;468920;468921;468922	468919			5	
VVIEDEQLVLGASQEPVGR	0	Unmodified	2037.0742	0.074234161	3053	Q6IBS0	TWF2	Twinfilin-2	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	75.074	74.519	2	0.0005702	67869	160511_QHF_FH_JSI12i_1	88.507	75.307			0.47225	0.4814	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.47225	0.4814	NaN	1	1	Median	18629000	17202000	1426700	0	0	0	0	0	0	0	0	0	18629000	17202000	1426700	57167	3053	53846	347632	468923	468923			1	
VVIFQQEQENK	1	Unmodified	1360.6987	0.69867961	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.02	4	4					2			2	3	2	3	40.704	38.013	2	1.0521E-37	32494	160511_QHF_FH_JSI11i_2	200.54	161.76			0.93333	1.0789	11.762	10	1	Median	1.3852	1.1507	5.0096	2	0	Median	0.90376	1.0556	7.2698	3	0	Median	1.1157	1.1082	0.69746	2	0	Median	0.83694	0.89169	9.1841	3	1	Median	981940000	478520000	503420000	163810000	82784000	81025000	273590000	129250000	144340000	330630000	159130000	171500000	213910000	107360000	106550000	57168	2052	53847	347633;347634;347635;347636;347637;347638;347639;347640;347641;347642	468924;468925;468926;468927;468928;468929;468930;468931;468932;468933;468934;468935;468936;468937;468938;468939	468934			16	
VVIGFVPLAEIMGYSTVLR	0	Unmodified	2063.1489	0.14891943	3948	Q969S9	GFM2	Ribosome-releasing factor 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		101.22	98.364	3	9.4753E-06	92260	160511_QHF_FH_JSI11i_3	80.638	74.371			0.94972	0.99877	9.5724	2	0	Median	NaN	NaN	NaN	0	0	Median	0.89697	1.0687	NaN	1	0	Median	1.0056	0.9334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	105510000	52154000	53360000	0	0	0	76764000	36578000	40186000	28750000	15577000	13174000	0	0	0	57169	3948	53848	347643;347644	468940;468941	468940			2	
VVIGMDVAASEFFR	0	Unmodified	1539.7755	0.77554972	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.78	4.35	2	66	17	2					10	8	19	39	31	100.38	99.249	2;3	3.9905E-52	86588	160511_QHF_FH_JSI10i_2	220.25	206.48			1.013	1.0005	19.135	74	19	Median	1.1821	0.98699	34.27	6	1	Median	0.81579	0.98413	29.691	13	4	Median	1.082	1.0601	12.802	29	8	Median	0.92943	0.98688	11.874	26	6	Median	7916300000	3789700000	4126700000	1263000000	551870000	711130000	1676200000	905690000	770470000	2928100000	1365500000	1562600000	2049100000	966620000	1082400000	57170	854	53849	347645;347646;347647;347648;347649;347650;347651;347652;347653;347654;347655;347656;347657;347658;347659;347660;347661;347662;347663;347664;347665;347666;347667;347668;347669;347670;347671;347672;347673;347674;347675;347676;347677;347678;347679;347680;347681;347682;347683;347684;347685;347686;347687;347688;347689;347690;347691;347692;347693;347694;347695;347696;347697;347698;347699;347700;347701;347702;347703;347704;347705;347706;347707;347708;347709;347710;347711;347712;347713;347714;347715;347716;347717;347718;347719;347720;347721;347722;347723;347724;347725;347726;347727;347728;347729;347730;347731;347732;347733;347734;347735;347736;347737;347738;347739;347740;347741	468942;468943;468944;468945;468946;468947;468948;468949;468950;468951;468952;468953;468954;468955;468956;468957;468958;468959;468960;468961;468962;468963;468964;468965;468966;468967;468968;468969;468970;468971;468972;468973;468974;468975;468976;468977;468978;468979;468980;468981;468982;468983;468984;468985;468986;468987;468988;468989;468990;468991;468992;468993;468994;468995;468996;468997;468998;468999;469000;469001;469002;469003;469004;469005;469006;469007;469008;469009;469010;469011;469012;469013;469014;469015;469016;469017;469018;469019;469020;469021;469022;469023;469024;469025;469026;469027;469028;469029;469030;469031;469032;469033;469034;469035;469036;469037;469038;469039;469040;469041;469042;469043;469044;469045;469046;469047;469048;469049;469050;469051;469052;469053;469054;469055;469056;469057;469058;469059;469060;469061;469062;469063;469064;469065;469066;469067;469068;469069;469070;469071;469072;469073;469074;469075;469076;469077;469078;469079;469080;469081;469082;469083;469084;469085;469086;469087;469088;469089;469090;469091;469092;469093;469094	469059			152	
VVIGMDVAASEFFR	0	Oxidation (M)	1555.7705	0.77046434	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.45	1	8			2			3	3	3	4	5	5	81.418	76.839	2;3	4.2162E-25	40980	160513_QHF_FH_JSI10Kac_6	160.67	104.66			1.0288	1.0598	11.572	17	1	Median	1.1803	1.0668	7.0202	3	0	Median	0.82251	0.99926	7.2361	4	0	Median	1.0785	1.0598	4.7485	5	1	Median	0.91724	1.0054	19.724	5	0	Median	2936100000	1470500000	1465600000	782480000	326520000	455960000	898780000	496790000	401990000	515680000	243890000	271790000	739120000	403270000	335850000	57171	854	53849	347742;347743;347744;347745;347746;347747;347748;347749;347750;347751;347752;347753;347754;347755;347756;347757;347758	469095;469096;469097;469098;469099;469100;469101;469102;469103;469104;469105;469106;469107;469108;469109;469110;469111;469112;469113;469114;469115;469116;469117;469118;469119;469120	469119		385	26	
VVIIDESHFLK	1	Unmodified	1298.7234	0.72343779	5149	Q9NZC9	SMARCAL1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	65.58	64.28	3	0.01823	55357	160511_QHF_FH_JSI12i_2	46.352	43.31			1.5237	1.6925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5237	1.6925	NaN	1	0	Median	11799000	4404400	7394100	0	0	0	0	0	0	0	0	0	11799000	4404400	7394100	57172	5149	53850	347759	469121	469121			0	
VVIIGAGK	1	Unmodified	755.49052	0.49052473	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.59	4	4	4				2	3	4	4	5	6	6	34.708	30.195	2	0.0016919	26906	160511_QHF_FH_JSI11i_1	86.086	39.735			1.0086	1.0489	14.53	21	0	Median	1.3429	1.1117	6.4525	4	0	Median	0.81421	0.96468	16.064	5	0	Median	1.0682	1.0634	13.424	6	0	Median	0.95889	1.0288	16.778	6	0	Median	4203000000	1915800000	2287200000	712610000	328950000	383670000	944060000	489540000	454520000	1473600000	612720000	860880000	1072700000	484560000	588160000	57173	2569	53851	347760;347761;347762;347763;347764;347765;347766;347767;347768;347769;347770;347771;347772;347773;347774;347775;347776;347777;347778;347779;347780	469122;469123;469124;469125;469126;469127;469128;469129;469130;469131;469132;469133;469134;469135;469136;469137;469138;469139;469140;469141;469142;469143;469144;469145;469146;469147;469148;469149	469124			28	
VVIIGAGKPAAVVLQTK	2	Unmodified	1663.0396	0.039626976	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS				15	0								1		1				74.119	63.571	3	0.054377	32890	160513_QHF_FH_JSI9Kac_5	34.909	22.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57174	2569	53852	347781	469150	469150			1	
VVILGSGVR	0	Unmodified	898.56	0.56000128	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			49.64	41.027	2	0.039489	22641	160513_QHF_FH_JSI10Kac_6	43.808	14.001			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57175	3647	53853	347782	469151	469151			1	
VVINFKK	2	Unmodified	846.53272	0.5327239	2862	Q53SF7	COBLL1	Cordon-bleu protein-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	30.059	29.354	3	0.0098396	24255	160511_QHF_FH_JSI9i_3	48.504	29.773			1.4482	1.4688	30.674	4	3	Median	2.9156	2.34	NaN	1	1	Median	1.4286	1.5999	NaN	1	1	Median	1.468	1.3485	NaN	1	1	Median	1.23	1.1441	NaN	1	0	Median	98792000	44371000	54421000	24301000	9946100	14355000	21809000	9816000	11993000	20993000	9358300	11634000	31688000	15251000	16438000	57176	2862	53854	347783;347784;347785;347786	469152;469153;469154;469155	469154			4	
VVINGQEVK	1	Unmodified	984.5604	0.56039521	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	25.553	24.99	2	0.0034126	22345	160511_QHF_FH_JSI12i_1	60.436	31.06			1.0161	1.0055	27.885	4	2	Median	1.5059	1.2494	NaN	1	1	Median	0.67045	0.77526	NaN	1	0	Median	1.3354	1.3134	NaN	1	1	Median	0.77319	0.80926	NaN	1	0	Median	801350000	436310000	365040000	161200000	84852000	76352000	163740000	86411000	77326000	242050000	136480000	105580000	234360000	128570000	105780000	57177	943	53855	347787;347788;347789;347790	469156;469157;469158;469159;469160	469158			5	
VVINVPIFK	1	Unmodified	1027.643	0.64300263	1622	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	82.025	81.29	2	2.5579E-05	72310	160511_QHF_FH_JSI10i_2	104.45	85.717			1.1085	1.1157	11.929	8	0	Median	1.3351	1.1292	6.481	2	0	Median	0.86345	1.0179	17.751	2	0	Median	1.0863	1.056	14.229	2	0	Median	1.0278	1.0792	17.995	2	0	Median	240760000	115430000	125320000	40746000	17531000	23215000	45620000	23054000	22566000	80253000	37410000	42844000	74137000	37440000	36697000	57178	1622	53856	347791;347792;347793;347794;347795;347796;347797;347798	469161;469162;469163;469164;469165;469166;469167;469168;469169;469170;469171;469172;469173;469174	469171			14	
VVIQSNDDIASR	0	Unmodified	1315.6732	0.67319314	3921	Q93008	USP9X	Probable ubiquitin carboxyl-terminal hydrolase FAF-X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	6.18	3					2	1			1	1	2	2	35.089	31.178	2	0.00024235	27782	160511_QHF_FH_JSI10i_1	93.096	83.39			1.038	0.92529	19.947	5	3	Median	1.038	0.86502	NaN	1	1	Median	0.60555	0.70453	NaN	1	1	Median	1.058	1.0147	13.052	2	1	Median	1.0429	1.1493	NaN	1	0	Median	814130000	474080000	340050000	212480000	118000000	94484000	307000000	197180000	109830000	292280000	157680000	134590000	2367500	1220500	1146900	57179	3921	53857	347799;347800;347801;347802;347803;347804	469175;469176;469177;469178;469179;469180	469177			6	
VVISLQLTAEK	1	Unmodified	1199.7125	0.71253876	1333	P30041	PRDX6	Peroxiredoxin-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	68.613	67.759	2	9.3199E-05	58623	160511_QHF_FH_JSI12i_3	105.2	68.502			0.85917	0.885	26.257	8	1	Median	0.85718	0.719	26.36	2	1	Median	0.68372	0.8093	10.271	2	0	Median	1.0171	1.0074	10.106	2	0	Median	1.0877	1.1521	34.924	2	0	Median	604130000	277550000	326580000	110850000	60185000	50665000	90098000	33762000	56335000	214200000	107640000	106550000	188980000	75959000	113020000	57180	1333	53858	347805;347806;347807;347808;347809;347810;347811;347812	469181;469182;469183;469184;469185;469186;469187;469188	469188			6	
VVITVQQLSNK	1	Unmodified	1227.7187	0.71868677	2917	Q5R372	RABGAP1L	Rab GTPase-activating protein 1-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		14.6	0.49							2	3		1	2	2		62.67	51.831	2	0.001377	26238	160513_QHF_FH_JSI10Kac_5	77.677	43.811			0.84677	0.92661	25.745	4	1	Median	NaN	NaN	NaN	0	0	Median	0.65573	0.78878	0.84501	2	0	Median	1.2075	1.2012	14.779	2	1	Median	NaN	NaN	NaN	0	0	Median	15487000	7882600	7604800	0	0	0	8452700	4504300	3948500	7034700	3378300	3656300	0	0	0	57181	2917	53859	347813;347814;347815;347816;347817	469189;469190;469191;469192;469193	469193			5	
VVITYSSR	0	Unmodified	923.50763	0.50763136	4740	Q9H6B4	CLMP	CXADR-like membrane protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	15	0.632							1	3	1		3	1	1	35.451	26.063	2	0.023118	15278	160513_QHF_FH_JSI11Kac_5	54.611	35.829			0.85426	1.0119	12.257	5	0	Median	NaN	NaN	NaN	0	0	Median	0.84619	0.98595	5.9158	3	0	Median	1.1725	1.1481	NaN	1	0	Median	1.1259	1.2272	NaN	1	0	Median	48324000	23649000	24675000	0	0	0	29577000	16295000	13282000	13121000	5157300	7963900	5626000	2197600	3428400	57182	4740	53860	347818;347819;347820;347821;347822	469194;469195;469196;469197	469195			4	
VVIVDPETGK	1	Unmodified	1055.5863	0.58627561	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	38.567	37.949	2	0.0015325	33475	160511_QHF_FH_JSI9i_1	65.305	58.637			1.1298	1.1646	33.448	4	1	Median	1.1777	0.96363	NaN	1	0	Median	1.029	1.1946	NaN	1	0	Median	2.1162	2.0804	NaN	1	1	Median	1.0838	1.1354	NaN	1	0	Median	555760000	262050000	293710000	91603000	42362000	49241000	168440000	92554000	75885000	174550000	66307000	108240000	121160000	60824000	60340000	57183	2636	53861	347823;347824;347825;347826	469198;469199;469200;469201;469202	469202			4	
VVIVDPETNK	1	Unmodified	1112.6077	0.60773933	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6	4	1				3	1			1	3	2	3	40.784	36.234	2	2.0955E-09	32754	160511_QHF_FH_JSI12i_1	130.75	82.899			0.9605	1.0472	20.198	9	2	Median	0.79203	0.65111	NaN	1	0	Median	0.79851	0.94004	17.786	3	1	Median	0.99859	0.98699	11.976	2	0	Median	1.0147	1.0608	10.797	3	1	Median	1747900000	822600000	925330000	315810000	116210000	199600000	464330000	247340000	216990000	496490000	224700000	271780000	471300000	234350000	236950000	57184	1085	53862	347827;347828;347829;347830;347831;347832;347833;347834;347835	469203;469204;469205;469206;469207;469208;469209;469210;469211;469212;469213;469214;469215;469216;469217;469218;469219;469220	469207			18	
VVIVNPETK	1	Unmodified	997.5808	0.5807963	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.636	33.032	2	0.0016808	29578	160511_QHF_FH_JSI11i_1	67.993	43.838			0.68932	0.74616	11.633	4	0	Median	1.015	0.83875	NaN	1	0	Median	0.63386	0.75064	NaN	1	0	Median	0.65456	0.63226	NaN	1	0	Median	0.72592	0.7417	NaN	1	0	Median	299290000	183880000	115400000	75939000	52490000	23449000	62301000	39639000	22662000	79502000	44281000	35221000	81544000	47474000	34070000	57185	5202	53863	347836;347837;347838;347839	469221;469222;469223;469224;469225	469222			5	
VVIYHLR	0	Unmodified	898.53887	0.53887191	3362	Q86WQ0	NR2C2AP	Nuclear receptor 2C2-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.32			5						8	3	3	4	3	37.048	31.197	2;3	0.0010839	16553	160513_QHF_FH_JSI12Kac_6	92.692	72.138			1.0404	1.0506	27.999	13	1	Median	1.2247	1.0632	3.0345	3	0	Plateau	0.91255	1.0935	12.892	3	0	Median	1.2237	1.164	43.624	4	1	Median	0.91754	1.0092	23.403	3	0	Median	829520000	400790000	428730000	211120000	92481000	118640000	302290000	159280000	143010000	199190000	88632000	110560000	116920000	60397000	56522000	57186	3362	53864	347840;347841;347842;347843;347844;347845;347846;347847;347848;347849;347850;347851;347852	469226;469227;469228;469229;469230;469231;469232;469233;469234;469235;469236;469237;469238	469235			13	
VVKHPIFER	1	Acetyl (K)	1165.6608	0.66077796	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									3		1	2		41.939	32.668	2;3	0.001542	17987	160513_QHF_FH_JSI11Kac_6	63.624	50.271			0.2951	0.28898	105.79	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3273	1.5769	NaN	1	0	Median	0.26213	0.25551	17.404	2	1	Median	NaN	NaN	NaN	0	0	Median	54860000	36733000	18127000	0	0	0	17186000	7154400	10031000	37674000	29579000	8095300	0	0	0	57187	5251	53865	347853;347854;347855	469239;469240;469241	469239	3345		3	
VVKQASEGPLK	2	Acetyl (K)	1196.6765	0.6764876	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	1.28				1	3	8	5	4	2	2	6	7	8	35.369	25.907	2;3	8.9564E-27	5847	160513_QHF_FH_JSI9Kac_3	182.64	134.77			0.63801	0.67675	181.73	19	2	Median	0.94833	0.80973	3.6047	2	0	Median	1.0302	1.1511	21.237	4	0	Median	0.39414	0.38905	306.55	7	2	Median	0.63617	0.67225	8.3848	6	0	Median	3296800000	2076000000	1220800000	463110000	237210000	225900000	681080000	303090000	377980000	1481800000	1122700000	359120000	670830000	413030000	257810000	57188	812	53866	347856;347857;347858;347859;347860;347861;347862;347863;347864;347865;347866;347867;347868;347869;347870;347871;347872;347873;347874;347875;347876;347877;347878	469242;469243;469244;469245;469246;469247;469248;469249;469250;469251;469252;469253;469254;469255;469256;469257;469258;469259;469260;469261;469262;469263;469264;469265;469266;469267;469268;469269;469270;469271;469272;469273;469274;469275;469276;469277;469278	469256	451		36	
VVKQASEGPLK	2	Unmodified	1154.6659	0.66592292	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			13.205	12.442	3	0.031156	9829	160511_QHF_FH_JSI10i_3	35.594	23.728			0.25813	0.3033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25813	0.3033	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43831000	35894000	7937000	0	0	0	43831000	35894000	7937000	0	0	0	0	0	0	57189	812	53866	347879	469279	469279			1	
VVKTALDAFGR	1	Acetyl (K)	1217.6768	0.67682195	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		69.707	58.779	2	0.046732	31575	160513_QHF_FH_JSI11Kac_5	43.512	31.665			0.7172	0.69794	4.4649	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7172	0.69794	4.4649	2	0	Median	NaN	NaN	NaN	0	0	Median	6719500	3608400	3111100	0	0	0	0	0	0	6719500	3608400	3111100	0	0	0	57190	1747	53867	347880;347881	469280	469280			1	
VVKVTAPEAQAK	2	Unmodified	1239.7187	0.71868677	5325	Q9UI40	SLC24A2	Sodium/potassium/calcium exchanger 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				55.889	54.323	3	0.00081096	44553	160511_QHF_FH_JSI9i_3	45.433	9.1125			1.4228	1.1361	NaN	1	0	Median	1.4228	1.1361	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	249460000	110830000	138630000	249460000	110830000	138630000	0	0	0	0	0	0	0	0	0	57191	5325	53868	347882	469281	469281			1	
VVLAEVIQAFSAPENAVR	0	Unmodified	1912.0418	0.04181182	4295	Q99622	C12orf57	Protein C10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6	5.79		2	4						2		3	2	3	99.897	97.955	2;3	2.2452E-22	90800	160511_QHF_FH_JSI11i_3	215.34	191.62			1.029	1.0733	23.642	8	2	Median	NaN	NaN	NaN	0	0	Median	0.78005	0.95039	24.029	3	0	Plateau	1.3437	1.254	12.599	2	1	Median	0.97936	1.0042	17.751	3	1	Plateau	1148700000	539350000	609360000	0	0	0	282570000	148530000	134040000	450120000	184950000	265170000	416020000	205880000	210140000	57192	4295	53869	347883;347884;347885;347886;347887;347888;347889;347890	469282;469283;469284;469285;469286;469287;469288;469289	469283			7	
VVLASQPDLECGFSR	0	Unmodified	1676.8192	0.81920545	5214	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		63.237	62.795	2	0.0048076	57055	160511_QHF_FH_JSI11i_1	54.259	41.059			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57193	5214	53870	347891	469290	469290			1	
VVLAYEPVWAIGTGK	1	Unmodified	1601.8817	0.88172935	1908	P60174	TPI1	Triosephosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	6.33	9	9	8					3	8	11	9	9	8	90.248	87.211	2;3	3.7351E-40	80135	160511_QHF_FH_JSI11i_2	206.51	169.32			1.0476	1.054	18.094	36	2	Median	1.2029	1.0038	30.136	10	2	Median	0.8894	1.07	6.3077	9	0	Median	1.0733	1.06	7.3314	9	0	Median	0.96128	1.0344	12.744	8	0	Median	29217000000	13758000000	15459000000	5540200000	2512700000	3027500000	7365600000	3629400000	3736100000	9469100000	4290800000	5178300000	6841700000	3325100000	3516600000	57194	1908	53871	347892;347893;347894;347895;347896;347897;347898;347899;347900;347901;347902;347903;347904;347905;347906;347907;347908;347909;347910;347911;347912;347913;347914;347915;347916;347917;347918;347919;347920;347921;347922;347923;347924;347925;347926;347927;347928	469291;469292;469293;469294;469295;469296;469297;469298;469299;469300;469301;469302;469303;469304;469305;469306;469307;469308;469309;469310;469311;469312;469313;469314;469315;469316;469317;469318;469319;469320;469321;469322;469323;469324;469325;469326;469327;469328;469329;469330;469331;469332;469333;469334;469335;469336;469337;469338;469339;469340;469341;469342;469343;469344;469345;469346;469347;469348;469349;469350;469351;469352;469353;469354;469355;469356;469357;469358;469359;469360;469361;469362;469363;469364;469365;469366;469367;469368;469369;469370;469371;469372;469373;469374;469375;469376;469377;469378;469379;469380;469381;469382;469383;469384;469385;469386;469387;469388;469389;469390;469391;469392;469393;469394;469395;469396;469397;469398;469399;469400;469401;469402;469403;469404;469405;469406	469373			116	
VVLCFDR	0	Unmodified	907.45857	0.45857268	412	O60341	KDM1A	Lysine-specific histone demethylase 1A	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				42.402	40.842	2	0.021331	33394	160511_QHF_FH_JSI9i_3	51.688	23.176			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57195	412	53872	347929	469407	469407			1	
VVLDDKDYFLFR	1	Acetyl (K)	1570.8031	0.80314468	1959	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	87.936	78.55	2	2.7649E-12	43772	160513_QHF_FH_JSI11Kac_6	129.16	98.284			0.30048	0.3045	77.308	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5513	0.52602	NaN	1	0	Median	0.16377	0.17627	NaN	1	1	Median	110940000	78603000	32342000	0	0	0	0	0	0	81816000	52475000	29342000	29129000	26128000	3000400	57196	1959	53873	347930;347931	469408;469409;469410	469409	1979		3	
VVLDVGSGTGILCMFAAK	1	Unmodified	1836.9478	0.94777678	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	3	0			3								1	1	1	101.61	101.56	2	3.7379E-184	88303	160511_QHF_FH_JSI12i_3	321.01	130.86			1.4266	1.0751	19.984	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95007	1.0751	NaN	1	0	Median	1.0921	1.0456	NaN	1	0	Median	1.4266	1.4975	NaN	1	0	Median	868310000	371770000	496540000	0	0	0	144830000	80986000	63840000	179860000	104730000	75137000	543620000	186060000	357560000	57197	4325	53874	347932;347933;347934	469411;469412	469412			2	
VVLEAPDETTLK	1	Unmodified	1313.7078	0.70784731	3045	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	55.8	53.426	2	9.1442E-16	47209	160511_QHF_FH_JSI9i_1	157.24	139.42			1.0594	1.0231	8.7494	5	0	Median	1.2504	1.0231	NaN	1	0	Median	0.83993	0.98216	NaN	1	0	Median	1.0871	1.0753	NaN	1	0	Median	0.95124	1.0204	16.267	2	0	Median	1577800000	814730000	763060000	378240000	183340000	194900000	348250000	177860000	170390000	424840000	208850000	216000000	426460000	244680000	181780000	57198	3045	53875	347935;347936;347937;347938;347939	469413;469414;469415;469416;469417;469418;469419;469420;469421	469419			9	
VVLEAPLITESALEVVRK	1	Unmodified	1965.151	0.15102792	3888	Q92797	SYMPK	Symplekin	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	98.149	98.158	3	4.9991E-05	85002	160511_QHF_FH_JSI12i_3	68.653	51.574			1.2084	1.1924	19.332	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4611	1.3671	NaN	1	0	Median	0.99944	1.0401	NaN	1	0	Median	62113000	29561000	32552000	0	0	0	0	0	0	21834000	9034200	12800000	40279000	20527000	19753000	57199	3888	53876	347940;347941	469422;469423;469424	469424			3	
VVLEGPAPWGFR	0	Unmodified	1326.7085	0.70845643	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		78.348	77.985	2	0.00055789	69641	160511_QHF_FH_JSI11i_3	83.948	73.424			1.214	1.09	30.265	2	2	Median	1.023	0.88	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4408	1.3501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	163370000	63641000	99732000	44675000	20786000	23889000	0	0	0	118700000	42855000	75843000	0	0	0	57200	4937	53877	347942;347943	469425;469426	469425			2	
VVLEHEEVR	0	Unmodified	1108.5877	0.58767259	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.15	6.07		8	1					3	1	3	3	3	4	21.729	18.465	2;3	6.4923E-06	15189	160511_QHF_FH_JSI11i_2	93.111	85.544			0.95269	1.0075	7.6295	13	0	Median	1.0186	0.88243	14.799	3	0	Plateau	0.81969	1.0075	1.3353	3	0	Plateau	0.98823	1.0147	2.3744	3	0	Median	0.8844	1.007	8.8203	4	0	Linear	2282400000	1235900000	1046500000	368080000	182380000	185700000	628190000	368560000	259620000	729620000	374850000	354770000	556510000	310070000	246440000	57201	5708	53878	347944;347945;347946;347947;347948;347949;347950;347951;347952;347953;347954;347955;347956	469427;469428;469429;469430;469431;469432;469433;469434;469435;469436;469437;469438;469439;469440;469441;469442	469437			16	
VVLENEAVR	0	Unmodified	1027.5662	0.56620887	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	28.963	28.097	2	0.018902	24595	160511_QHF_FH_JSI10i_2	42.599	8.3459			0.68125	0.63964	14.111	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.68125	0.84365	NaN	1	0	Median	0.62129	0.63964	NaN	1	0	Median	0.69342	0.7704	NaN	1	0	Median	218650000	133750000	84902000	0	0	0	61283000	33404000	27879000	93544000	60977000	32567000	63825000	39368000	24457000	57202	5234	53879	347957;347958;347959	469443	469443			1	
VVLEPDSRK	1	Unmodified	1041.5819	0.58185893	5220	Q9P2N5	RBM27	RNA-binding protein 27	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	14.924	14.986	2	0.0031402	12276	160511_QHF_FH_JSI11i_3	69.598	43.659			0.92434	0.9685	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92434	0.9685	NaN	1	0	Median	17991000	8919500	9071400	0	0	0	0	0	0	0	0	0	17991000	8919500	9071400	57203	5220	53880	347960;347961	469444;469445	469444			2	
VVLFEMEAR	0	Unmodified	1092.5638	0.56376603	479	O75131	CPNE3	Copine-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	64.83	63.933	2	0.00092686	54985	160511_QHF_FH_JSI12i_2	71.501	53.516			1.0911	1.0946	9.0178	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.89615	1.0946	NaN	1	1	Median	1.2461	1.2591	NaN	1	0	Median	0.95527	1.0639	NaN	1	0	Median	559170000	276010000	283160000	0	0	0	137340000	66931000	70409000	250370000	117140000	133230000	171460000	91945000	79514000	57204	479	53881	347962;347963;347964	469446;469447;469448	469446			3	
VVLGEFGVR	0	Unmodified	974.55492	0.5549159	260	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1							1	1	1	1	57.94	57.132	2	0.013011	50524	160511_QHF_FH_JSI10i_2	46.994	17.618			0.85617	0.88267	21.588	4	1	Median	0.97322	0.8299	NaN	1	0	Median	0.7532	0.9388	NaN	1	0	Median	1.2698	1.1731	NaN	1	1	Median	0.62383	0.70259	NaN	1	0	Median	416980000	207540000	209440000	115540000	54449000	61091000	95034000	52902000	42132000	94015000	42876000	51139000	112390000	57312000	55074000	57205	260	53882	347965;347966;347967;347968	469449;469450;469451;469452;469453	469453			5	
VVLHDGDPNEPVSDYINANIIMPEFETK	1	Unmodified	3155.5121	0.51213097	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		100.73	100.66	3;4	1.1787E-07	91331	160511_QHF_FH_JSI10i_1	63.901	58.471			0.99601	1.0503	7.4515	2	2	Median	NaN	NaN	NaN	0	0	Median	0.87864	0.99642	NaN	1	1	Median	1.1291	1.1072	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78805000	32612000	46193000	0	0	0	23543000	16070000	7473300	55261000	16542000	38719000	0	0	0	57206	2239	53883	347969;347970	469454;469455	469454			2	
VVLIGDSGVGK	1	Unmodified	1042.6023	0.60226003	2722;2009	P62491;Q15907	RAB11A;RAB11B	Ras-related protein Rab-11A;Ras-related protein Rab-11B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.42	4	5	4				5			3	4	5	6	47.665	44.306	2	5.0708E-08	25599	160513_QHF_FH_JSI11Kac_4	118.18	45.534			1.3853	1.3499	32.008	16	5	Linear	1.6529	1.3718	31.466	3	0	Plateau	0.71208	0.86763	23.412	4	0	Median	0.84408	0.81792	41.918	4	1	Median	0.71243	0.78836	34.056	5	4	Median	6926000000	3427000000	3499000000	1249800000	538070000	711700000	1884700000	1058700000	826020000	2077700000	986310000	1091400000	1713800000	843900000	869870000	57207	2009;2722	53884	347971;347972;347973;347974;347975;347976;347977;347978;347979;347980;347981;347982;347983;347984;347985;347986;347987;347988	469456;469457;469458;469459;469460;469461;469462;469463;469464;469465;469466;469467;469468;469469;469470;469471;469472;469473;469474;469475;469476;469477;469478;469479;469480;469481	469467			26	
VVLIGGKPDR	1	Unmodified	1052.6342	0.63422886	1975	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.48	5.46		7	11					1	4	8	5	6	4	27.683	25.114	2;3	2.8543E-13	20294	160511_QHF_FH_JSI9i_3	160.88	139.35			0.77892	0.81943	73.825	23	1	Median	1.0539	0.89043	86.768	8	0	Median	0.69178	0.80037	8.4162	5	0	Median	0.81228	0.80732	108.35	6	1	Median	0.77044	0.78104	14.164	4	0	Median	29967000000	14823000000	15144000000	11360000000	4685000000	6674800000	7751100000	4474700000	3276400000	8458600000	4190700000	4268000000	2397400000	1472800000	924600000	57208	1975	53885	347989;347990;347991;347992;347993;347994;347995;347996;347997;347998;347999;348000;348001;348002;348003;348004;348005;348006;348007;348008;348009;348010;348011	469482;469483;469484;469485;469486;469487;469488;469489;469490;469491;469492;469493;469494;469495;469496;469497;469498;469499;469500;469501;469502;469503;469504;469505;469506;469507;469508;469509;469510;469511;469512;469513;469514;469515;469516;469517;469518;469519;469520	469505			39	
VVLIVGETGSGK	1	Unmodified	1157.6656	0.66558856	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0		By matching	By MS/MS		14.5	0.5							1	1			1	1		57.615	46.821	2	0.0028021	27028	160513_QHF_FH_JSI11Kac_4	66.435	55.27			0.90066	0.98514	16.789	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91523	1.1093	NaN	1	0	Median	0.88632	0.87487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7762100	3579500	4182600	0	0	0	2418500	1319900	1098500	5343700	2259600	3084100	0	0	0	57209	4750	53886	348012;348013	469521	469521			1	
VVLKHLK	2	Acetyl (K)	877.57492	0.57492306	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	35.624	26.626	2;3	0.010357	14019	160513_QHF_FH_JSI12Kac_6	57.281	53.873			0.96974	0.93005	25.837	8	0	Median	1.0752	0.93005	4.0518	2	0	Median	1.0943	1.3208	1.2841	2	0	Median	0.69444	0.67074	2.4149	2	0	Median	0.85851	0.916	6.9023	2	0	Median	480570000	279280000	201300000	80138000	39741000	40397000	151790000	96168000	55618000	151570000	87920000	63646000	97083000	55447000	41636000	57210	2094	53887	348014;348015;348016;348017;348018;348019;348020;348021	469522;469523;469524;469525;469526;469527;469528;469529;469530;469531	469527	2193		10	
VVLLGAPNAGK	1	Unmodified	1037.6233	0.62332982	549	O75616	ERAL1	GTPase Era, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	44.744	43.888	2	0.0014306	37740	160511_QHF_FH_JSI11i_2	63.673	53.967			1.0854	1.1054	45.668	5	0	Median	3.0531	2.6388	NaN	1	0	Median	0.64586	0.77826	NaN	1	0	Median	1.0987	1.0828	2.9095	2	0	Median	1.0368	1.1177	NaN	1	0	Median	218290000	106000000	112290000	27115000	7362000	19753000	42390000	25215000	17175000	108830000	52074000	56755000	39954000	21348000	18606000	57211	549	53888	348022;348023;348024;348025;348026	469532;469533;469534	469534			2	
VVLLGEGCVGK	1	Unmodified	1129.6165	0.61652988	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	49.506	48.544	2	0.0019023	41868	160511_QHF_FH_JSI11i_2	64.841	35.368			1.0508	1.0956	17.72	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96755	0.96659	NaN	1	1	Median	1.1413	1.2419	NaN	1	0	Median	91247000	46832000	44415000	0	0	0	0	0	0	53586000	28171000	25415000	37661000	18661000	19000000	57212	5388	53889	348027;348028;348029	469535;469536;469537	469537			3	
VVLLGMDILSALVTR	0	Unmodified	1598.9429	0.9429494	3266	Q7Z460	CLASP1	CLIP-associating protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	101.39	98.531	2	1.5141E-06	55054	160513_QHF_FH_JSI10Kac_6	106.49	82.641			0.82386	0.91342	1.967	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75505	0.9008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89894	0.92621	NaN	1	0	Median	84542000	42658000	41884000	0	0	0	43438000	20860000	22578000	0	0	0	41105000	21798000	19306000	57213	3266	53890	348030;348031	469538;469539;469540	469540			3	
VVLLHGPPGTGK	1	Unmodified	1173.687	0.68699271	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.66		7	4						7	5	5	5	3	39.092	35.268	2;3	1.9704E-07	29569	160511_QHF_FH_JSI12i_3	132.91	127.43			0.95094	1.0028	30.024	17	1	Median	1.0309	0.89045	25.281	5	0	Median	0.85509	1.0254	18.99	4	0	Median	0.95094	0.96994	39.886	5	1	Median	1.0046	1.028	46.056	3	0	Median	2395500000	1214400000	1181000000	678490000	326860000	351630000	602330000	314510000	287820000	557510000	281320000	276200000	557130000	291750000	265380000	57214	2692	53891	348032;348033;348034;348035;348036;348037;348038;348039;348040;348041;348042;348043;348044;348045;348046;348047;348048;348049	469541;469542;469543;469544;469545;469546;469547;469548;469549;469550;469551;469552;469553;469554;469555;469556;469557;469558;469559;469560;469561;469562;469563;469564;469565;469566;469567;469568;469569	469562			29	
VVLLTEVDK	1	Unmodified	1014.5961	0.59611202	1506	P40938	RFC3	Replication factor C subunit 3	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	63.216	52.516	2	0.040404	29159	160513_QHF_FH_JSI12Kac_4	41.448	13.274			0.72613	0.77276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72613	0.77276	NaN	1	0	Median	5113400	2536000	2577400	0	0	0	0	0	0	0	0	0	5113400	2536000	2577400	57215	1506	53892	348050	469570	469570			1	
VVLLTGETSTDLK	1	Unmodified	1374.7606	0.76061116	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								3	2	2	3	58.152	57.297	2	8.1764E-16	52137	160511_QHF_FH_JSI12i_1	166.55	117.13			0.92789	0.93411	30.93	8	4	Median	1.0403	0.85188	51.254	3	2	Median	0.7082	0.8614	2.8678	2	1	Median	1.043	1.0146	NaN	1	0	Median	0.92789	0.99495	0.32896	2	1	Median	592500000	310360000	282140000	129230000	67431000	61801000	152120000	85051000	67073000	143420000	74060000	69355000	167730000	83820000	83911000	57216	552	53893	348051;348052;348053;348054;348055;348056;348057;348058;348059;348060	469571;469572;469573;469574;469575;469576;469577;469578;469579;469580	469574			10	
VVLNMNLTPTQGSYTFDPVTK	1	Unmodified	2324.1722	0.17223365	5535	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.414	91.354	3	0.0011035	82845	160511_QHF_FH_JSI10i_1	47.603	39.002			0.50622	0.58079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.50622	0.58079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26713000	15834000	10878000	0	0	0	26713000	15834000	10878000	0	0	0	0	0	0	57217	5535	53894	348061	469581	469581			1	
VVLPCSVQEYQVGQLYSVAEASK	1	Unmodified	2553.2785	0.27848963	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.75	0.433	1	3									1	2	1	92.787	92.291	3	2.2016E-08	81834	160511_QHF_FH_JSI10i_2	93.729	80.672			0.67629	0.738	30.932	4	3	Median	NaN	NaN	NaN	0	0	Median	0.56783	0.69046	NaN	1	1	Median	0.99861	0.96679	28.773	2	1	Median	0.50752	0.57107	NaN	1	1	Median	173510000	100940000	72568000	0	0	0	36314000	24387000	11927000	102730000	53025000	49707000	34465000	23531000	10934000	57218	1636	53895	348062;348063;348064;348065	469582;469583;469584;469585;469586;469587	469587			6	
VVLPIEAPIR	0	Unmodified	1105.6859	0.68593008	767	P00403	MT-CO2	Cytochrome c oxidase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.59	6.37	4	4	3					5	1	4	4	4	5	75.94	71.803	2	2.5173E-07	65127	160511_QHF_FH_JSI10i_2	131.06	85.344			1.0112	1.0053	54.778	17	3	Median	1.3235	1.0962	73.882	4	1	Median	0.75674	0.90278	68.433	4	1	Median	1.1482	1.1518	14.265	4	0	Median	0.92765	1.0053	31.453	5	1	Median	4555500000	2553700000	2001800000	728120000	344580000	383540000	1318600000	850950000	467670000	1406300000	712930000	693410000	1102400000	645280000	457130000	57219	767	53896	348066;348067;348068;348069;348070;348071;348072;348073;348074;348075;348076;348077;348078;348079;348080;348081;348082	469588;469589;469590;469591;469592;469593;469594;469595;469596;469597;469598;469599;469600;469601;469602;469603;469604;469605;469606;469607;469608;469609;469610;469611	469609			24	
VVLPTFILEK	1	Unmodified	1157.706	0.70599682	4512;4513	Q9BXB4;Q9BXB5	OSBPL11;OSBPL10	Oxysterol-binding protein-related protein 11;Oxysterol-binding protein-related protein 10	no	no	0	0	0	0			By MS/MS		3	0			1									1		92.106	92.106	2	0.05622	82101	160511_QHF_FH_JSI11i_3	41.876	12.727			0.30095	0.28126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30095	0.28126	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134070000	112800000	21264000	0	0	0	0	0	0	134070000	112800000	21264000	0	0	0	57220	4512;4513	53897	348083	469612	469612			1	
VVLPTFILEPR	0	Unmodified	1282.7649	0.76490868	4560	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	97.033	96.833	2	0.00040931	85754	160511_QHF_FH_JSI10i_2	71.349	68.093			1.0574	1.128	12.398	7	0	Median	1.2894	1.128	NaN	1	0	Median	0.96251	1.1601	14.038	2	0	Median	1.1829	1.1358	12.621	2	0	Median	1.2316	1.2434	21.439	2	0	Median	140560000	62751000	77807000	18701000	6471500	12230000	31897000	16664000	15234000	39924000	18801000	21123000	50036000	20815000	29221000	57221	4560	53898	348084;348085;348086;348087;348088;348089;348090;348091	469613;469614;469615;469616;469617;469618;469619;469620;469621;469622;469623;469624;469625	469623			13	
VVLPTFILER	0	Unmodified	1185.7121	0.71214483	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		92.155	92.155	2	0.00037215	82190	160511_QHF_FH_JSI11i_3	76.605	61.023			0.84291	0.79253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84291	0.79253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	145120000	73954000	71161000	0	0	0	0	0	0	145120000	73954000	71161000	0	0	0	57222	4248	53899	348092	469626;469627	469627			2	
VVLPTLASLR	0	Unmodified	1067.6703	0.67028001	2180	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	77.291	76.518	2	0.024205	62953	160511_QHF_FH_JSI9i_3	41.029	16.106			0.94815	0.89397	7.8923	4	0	Median	1.0652	0.86762	NaN	1	0	Median	0.76433	0.88855	NaN	1	0	Median	1.0829	1.0335	NaN	1	0	Median	0.84393	0.89942	NaN	1	0	Median	141570000	69346000	72227000	27094000	11364000	15730000	37339000	22246000	15093000	29711000	12600000	17111000	47429000	23136000	24292000	57223	2180	53900	348093;348094;348095;348096	469628;469629;469630;469631	469630			4	
VVLPYLVPK	1	Unmodified	1026.6478	0.64775366	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							1	2	2	2	74.744	74.139	2	0.0022117	65005	160511_QHF_FH_JSI11i_2	65.676	61.32			0.82302	0.87039	9.5983	7	0	Median	1.039	0.87039	NaN	1	0	Median	0.68168	0.80837	14.273	2	0	Median	0.9114	0.91204	11.295	2	0	Median	0.80333	0.86222	8.6238	2	0	Median	521710000	278830000	242880000	74205000	35682000	38523000	121790000	72912000	48876000	209360000	111470000	97897000	116350000	58767000	57587000	57224	3860	53901	348097;348098;348099;348100;348101;348102;348103	469632;469633;469634;469635	469634			4	
VVLQELRR	0	Unmodified	1011.6189	0.61891314	2715;2398	Q13404;Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			28.242	26.895	3	0.014151	21872	160511_QHF_FH_JSI9i_3	35.438	3.1178			1.2179	1.1855	16.019	2	0	Median	1.6242	1.3277	NaN	1	0	Median	0.91321	1.0586	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	239190000	114760000	124420000	121300000	52145000	69158000	117880000	62617000	55266000	0	0	0	0	0	0	57225	2398;2715	53902	348104;348105	469636;469637	469637			2	
VVLQQDPQQAR	0	Unmodified	1280.6837	0.68369824	416	O60437	PPL	Periplakin	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	21.939	21.553	2	0.00034543	18583	160511_QHF_FH_JSI10i_1	88.948	68.619			0.88037	0.96871	15.648	2	2	Median	NaN	NaN	NaN	0	0	Median	0.9127	1.082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8492	0.86724	NaN	1	1	Median	119780000	66981000	52797000	0	0	0	62931000	37262000	25669000	0	0	0	56847000	29719000	27128000	57226	416	53903	348106;348107;348108	469638;469639;469640	469639			3	
VVLSGHPFK	1	Unmodified	982.56	0.56000128	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			31.788	30.395	3	0.0015482	24723	160511_QHF_FH_JSI9i_3	54.416	45.202			1.5925	1.5094	62.545	2	0	Median	2.9326	2.3489	NaN	1	0	Median	0.86482	0.9699	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85144000	37660000	47484000	54176000	17884000	36292000	30968000	19776000	11191000	0	0	0	0	0	0	57227	2795	53904	348109;348110	469641;469642	469641			2	
VVLSLHHPPDR	0	Unmodified	1268.699	0.69895438	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			28.89	27.537	3	0.002146	22744	160511_QHF_FH_JSI10i_3	48.944	39.986			0.96213	0.90718	3.8476	2	0	Median	1.1107	0.88283	NaN	1	0	Median	0.83344	0.9322	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91595000	50124000	41471000	51464000	27491000	23973000	40131000	22632000	17499000	0	0	0	0	0	0	57228	1790	53905	348111;348112	469643;469644	469643			1	
VVLSSQDK	1	Unmodified	874.476	0.47599688	2895;2638	Q15155;Q5JPE7;P69849	NOMO1;NOMO2;NOMO3	Nodal modulator 1;Nodal modulator 2;Nodal modulator 3	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	13.259	12.836	2	0.0063395	10717	160511_QHF_FH_JSI12i_1	62.88	48.723			0.86608	0.97525	7.6982	4	0	Linear	1.349	1.1255	NaN	1	0	Median	0.79855	0.94715	NaN	1	0	Median	1.0971	1.0756	NaN	1	0	Median	0.93593	0.99687	NaN	1	0	Median	973130000	499430000	473700000	210630000	82105000	128530000	260640000	153500000	107140000	247550000	126450000	121110000	254310000	137380000	116930000	57229	2638;2895	53906	348113;348114;348115;348116	469645;469646;469647;469648;469649	469647			5	
VVLSVPAEVTVILLDIEGTTTPIAFVK	1	Unmodified	2823.6249	0.62489953	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.67	6.6		2							1	1	1	1		104.49	102.53	3;4	3.7404E-10	92355	160511_QHF_FH_JSI11i_2	77.641	75.328			0.96514	0.97622	22.327	3	1	Median	1.1604	0.97622	NaN	1	1	Median	0.96514	1.138	NaN	1	0	Median	0.7498	0.73303	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	49506000	26491000	23016000	8650000	2758500	5891500	30175000	18896000	11279000	10681000	4836200	5845300	0	0	0	57230	5317	53907	348117;348118;348119	469650;469651;469652	469651			2	
VVLSVSSGGQHTVLLVK	1	Unmodified	1722.004	0.003969751	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2		2	1	3	62.5	62.22	2;3	5.2389E-55	33999	160513_QHF_FH_JSI10Kac_6	190.1	132.57			0.83238	0.8325	6.9783	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83238	0.8325	6.9783	2	2	Median	162430000	79548000	82882000	0	0	0	0	0	0	0	0	0	162430000	79548000	82882000	57231	1145	53908	348120;348121;348122;348123;348124;348125	469653;469654;469655;469656;469657;469658;469659	469659			7	
VVLTDPEAAK	1	Unmodified	1041.5706	0.57062555	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	3									2			1	34.376	33.121	2	0.0016427	29880	160511_QHF_FH_JSI12i_1	68.846	41.716			0.71389	0.59487	NaN	1	1	Median	0.71389	0.59487	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118160000	70835000	47328000	118160000	70835000	47328000	0	0	0	0	0	0	0	0	0	57232	802	53909	348126;348127;348128	469660;469661;469662	469660			3	
VVLTQANK	1	Unmodified	871.51272	0.51271674	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.22	5.24	4	3					2			1	2	3	3	17.17	15.071	2	0.0071383	12608	160511_QHF_FH_JSI10i_1	67.032	45.732			0.9476	0.95968	36.496	9	1	Median	1.653	1.3716	NaN	1	0	Median	1.2388	1.5023	63.38	2	0	Median	0.9476	0.93157	6.5037	3	0	Median	0.86755	0.92786	28.837	3	1	Median	2043100000	966070000	1077100000	191870000	77525000	114340000	650920000	286340000	364580000	657040000	307720000	349320000	543310000	294490000	248820000	57233	636	53910	348129;348130;348131;348132;348133;348134;348135;348136;348137	469663;469664;469665;469666;469667;469668;469669;469670;469671;469672;469673	469668			11	
VVLTSLGQDHNSK	1	Unmodified	1396.731	0.73104237	5103	Q9NXC5	MIOS	WD repeat-containing protein mio	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	29.119	29.083	3	0.0016735	24367	160511_QHF_FH_JSI12i_3	51.009	49.082			0.85558	0.81451	19.896	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85558	0.81451	NaN	1	1	Median	0.72471	0.72394	26.439	2	1	Median	116500000	67836000	48664000	0	0	0	0	0	0	26649000	15499000	11149000	89852000	52337000	37515000	57234	5103	53911	348138;348139;348140	469674;469675;469676	469675			3	
VVLVDRK	1	Unmodified	827.52289	0.52288749	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	1	2		14.24	13.783	2	0.0084309	10898	160511_QHF_FH_JSI9i_3	84.097	25.852			0.86877	0.8362	49.756	4	2	Median	1.0568	0.84787	NaN	1	0	Median	0.71417	0.8247	NaN	1	0	Median	1.1638	1.1061	81.492	2	2	Median	NaN	NaN	NaN	0	0	Median	764000000	386950000	377050000	232830000	111220000	121620000	179840000	98569000	81276000	351330000	177170000	174160000	0	0	0	57235	1085	53912	348141;348142;348143;348144	469677;469678;469679;469680;469681;469682	469682			6	
VVLVFGYNCCK	1	Unmodified	1357.6523	0.65226346	3648	Q8NEZ5	FBXO22	F-box only protein 22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	72.647	64.16	2	1.3566E-11	35335	160513_QHF_FH_JSI10Kac_6	144.38	136.99			0.9909	1.7916	31.347	5	2	Plateau	0.9909	0.84204	NaN	1	0	Median	1.1764	1.4076	34.117	2	1	Median	0.92935	0.89035	NaN	1	1	Median	1.2696	1.3767	NaN	1	0	Median	133600000	66929000	66673000	11627000	6843500	4783700	74971000	38084000	36887000	29785000	13583000	16202000	17219000	8418600	8800200	57236	3648	53913	348145;348146;348147;348148;348149	469683;469684;469685;469686;469687	469687			5	
VVLVLAGR	0	Unmodified	825.54362	0.54362294	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.17	3	4	4		1	2	4	6	7	8	10	7	6	53.27	46.645	2	3.3401E-43	25744	160513_QHF_FH_JSI9Kac_5	209.44	109.93			0.94863	1.0642	60.697	30	4	Median	1.3649	1.2137	26.998	7	1	Median	0.9361	1.0825	70.617	10	2	Median	1.0745	1.0136	92.066	7	1	Median	0.85577	0.92565	8.5347	6	0	Median	32368000000	14852000000	17516000000	9270800000	3620700000	5650100000	9303300000	4638200000	4665100000	8473100000	3867800000	4605300000	5320800000	2725000000	2595800000	57237	1953	53914	348150;348151;348152;348153;348154;348155;348156;348157;348158;348159;348160;348161;348162;348163;348164;348165;348166;348167;348168;348169;348170;348171;348172;348173;348174;348175;348176;348177;348178;348179;348180	469688;469689;469690;469691;469692;469693;469694;469695;469696;469697;469698;469699;469700;469701;469702;469703;469704;469705;469706;469707;469708;469709;469710;469711;469712;469713;469714;469715;469716;469717;469718;469719;469720;469721;469722;469723;469724;469725;469726;469727;469728;469729;469730;469731;469732;469733;469734;469735;469736;469737;469738;469739;469740;469741;469742	469699			55	
VVLVNNILQNAQER	0	Unmodified	1608.8948	0.89475365	672	O95295	SNAPIN	SNARE-associated protein Snapin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.38	0.484		5	3							3	2	3		70.689	69.818	2	9.9178E-10	58455	160511_QHF_FH_JSI10i_3	146.16	139.92			0.98881	0.94653	11.49	7	3	Median	1.2009	1.0608	12.214	3	2	Median	0.79559	0.9372	2.1177	2	0	Median	0.89525	0.86844	12.177	2	1	Median	NaN	NaN	NaN	0	0	Median	167210000	88379000	78833000	85635000	44133000	41502000	50835000	28061000	22774000	30742000	16184000	14557000	0	0	0	57238	672	53915	348181;348182;348183;348184;348185;348186;348187;348188	469743;469744;469745;469746;469747;469748;469749;469750;469751;469752;469753	469745			11	
VVLVSSASDIPVQSHR	0	Unmodified	1692.9159	0.91588303	1599	P46939	UTRN	Utrophin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		49.22	49.22	3	1.8157E-05	43557	160511_QHF_FH_JSI11i_3	99.796	82.718			0.99441	0.95232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99441	0.95232	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	61661000	25115000	36546000	0	0	0	0	0	0	61661000	25115000	36546000	0	0	0	57239	1599	53916	348189	469754	469754			1	
VVLVTGAGAGLGR	0	Unmodified	1168.6928	0.69280637	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.54	1	4	5					4	4	4	4	4	6	55.506	50.323	2	6.748E-08	42204	160511_QHF_FH_JSI10i_3	140.45	109.22			1.0665	1.0479	11.637	17	0	Median	1.156	0.99338	9.0571	4	0	Median	0.84535	1.0537	4.9454	4	0	Linear	1.1149	1.0789	18.034	4	0	Median	0.94148	1.0329	14.152	5	0	Median	2671200000	1307700000	1363500000	531820000	225810000	306020000	643440000	355260000	288180000	694320000	329320000	365000000	801580000	397320000	404260000	57240	1747	53917	348190;348191;348192;348193;348194;348195;348196;348197;348198;348199;348200;348201;348202;348203;348204;348205;348206;348207	469755;469756;469757;469758;469759;469760;469761;469762;469763;469764;469765;469766;469767;469768;469769;469770;469771;469772;469773;469774;469775;469776;469777;469778;469779;469780;469781;469782;469783;469784;469785	469760			31	
VVLWGSDYSK	1	Unmodified	1152.5815	0.58152458	737	O95834	EML2	Echinoderm microtubule-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.7	3	3	1							2	2	2	1	55.309	54.658	2	1.0811E-05	47949	160511_QHF_FH_JSI9i_2	104.2	91.163			1.1588	1.1521	31.796	6	2	Median	1.2457	1.0641	NaN	1	0	Median	0.91285	1.0934	22.514	2	0	Median	1.1075	1.0926	18.743	2	1	Median	2.1486	2.2094	NaN	1	1	Median	762740000	427100000	335630000	113470000	56976000	56495000	216950000	132880000	84067000	380290000	221630000	158660000	52026000	15612000	36414000	57241	737	53918	348208;348209;348210;348211;348212;348213;348214	469786;469787;469788;469789;469790;469791;469792;469793	469789			8	
VVLWSFFEALVLVAMTLGQIYYLK	1	Unmodified	2802.5434	0.54341851	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	10.7	4.37			2	2	2		2		1		2	3	4	107.69	100.79	3	3.4462E-52	60361	160513_QHF_FH_JSI10Kac_6	177.61	167.35			0.95481	1.0385	39.65	9	1	Median	NaN	NaN	NaN	0	0	Median	1.1231	1.3172	63.796	2	0	Median	0.92175	0.90389	37.845	3	1	Median	1.0517	1.1422	32.755	4	0	Median	93878000	46376000	47502000	0	0	0	38753000	21072000	17681000	15710000	6737600	8972000	39416000	18567000	20849000	57242	2655	53919	348215;348216;348217;348218;348219;348220;348221;348222;348223	469794;469795;469796;469797;469798;469799;469800;469801;469802;469803;469804;469805;469806;469807;469808;469809;469810;469811;469812;469813;469814	469814			21	
VVLWSFFEALVLVAMTLGQIYYLK	1	Oxidation (M)	2818.5383	0.53833313	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	13.5	2.5				2					2		2	1	1	107.26	98.95	3	4.5078E-27	37274	160513_QHF_FH_JSI10Kac_1	140.97	126.56			1.2536	0.59043	51.105	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.78586	0.92365	63.461	2	0	Median	NaN	NaN	NaN	0	0	Median	1.3238	1.4108	NaN	1	0	Median	114420000	71456000	42968000	0	0	0	102110000	63366000	38742000	5523700	5523700	0	6792100	2566200	4225900	57243	2655	53919	348224;348225;348226;348227	469815;469816;469817;469818;469819;469820	469818		2073	6	
VVMALGDYMGASCHACIGGTNVR	0	Unmodified	2438.0963	0.096325061	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.27		4	4						1	2	3	2	2	70.895	69.414	3	8.3306E-48	58198	160511_QHF_FH_JSI10i_3	199.33	196.64			1.0372	1.1488	13.66	9	2	Median	1.3754	1.1544	11.411	2	0	Median	0.98265	1.1577	7.3775	3	1	Median	0.90733	0.88338	7.0528	2	1	Median	1.0899	1.1643	1.9008	2	0	Median	926230000	453510000	472720000	143930000	60723000	83204000	301450000	154290000	147160000	313470000	166550000	146920000	167390000	71951000	95438000	57244	1917	53920	348228;348229;348230;348231;348232;348233;348234;348235;348236	469821;469822;469823;469824;469825;469826;469827;469828;469829;469830;469831;469832;469833;469834;469835;469836;469837;469838	469825			18	
VVMALGDYMGASCHACIGGTNVR	0	Oxidation (M)	2454.0912	0.091239683	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	0	0	1	0		By MS/MS	By MS/MS		3	0			2								1	1		59.412	58.647	3	0.00021427	48993	160511_QHF_FH_JSI10i_3	46.578	43.696			0.88306	0.91018	28.505	2	1	Median	NaN	NaN	NaN	0	0	Median	0.99429	1.1134	NaN	1	0	Median	0.78428	0.74403	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49522000	24792000	24729000	0	0	0	20116000	9312600	10803000	29406000	15480000	13926000	0	0	0	57245	1917	53920	348237;348238	469839;469840	469840		1593	2	
VVMDGVISDHECQELQR	0	Unmodified	2013.9248	0.92480951	2806	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.33	0.471		2	1									1	2	50.494	49.774	3	0.00013329	42555	160511_QHF_FH_JSI12i_2	61.648	57.807			1.0916	1.1384	32.143	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0563	1.0646	NaN	1	0	Median	1.6967	1.8308	10.339	2	1	Median	114110000	65347000	48760000	0	0	0	0	0	0	59575000	40863000	18712000	54532000	24484000	30049000	57246	2806	53921	348239;348240;348241	469841;469842;469843;469844	469842			4	
VVMEFLHECMVNK	1	Unmodified	1634.7619	0.76189026	2880	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									1	3	63.689	63.546	2;3	3.0266E-05	54966	160511_QHF_FH_JSI12i_3	76.728	68.129			1.175	1.1405	25.259	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0121	0.95398	NaN	1	0	Median	1.3642	1.3636	NaN	1	0	Median	171880000	75476000	96407000	0	0	0	0	0	0	79832000	34033000	45799000	92052000	41443000	50609000	57247	2880	53922	348242;348243;348244;348245	469845;469846;469847;469848;469849	469847			5	
VVMITGDNPLTACHVAQELHFIEK	1	Unmodified	2721.3618	0.36184211	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		93.378	93.378	4	1.3365E-08	83242	160511_QHF_FH_JSI11i_3	86.856	74.054			0.96698	0.91687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96698	0.91687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24667000	11478000	13189000	0	0	0	0	0	0	24667000	11478000	13189000	0	0	0	57248	4868	53923	348246	469850	469850			1	
VVNALEAQNR	0	Unmodified	1112.5938	0.5938206	3416	Q8IWA4	MFN1	Mitofusin-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	20.697	19.562	2	0.017273	16109	160511_QHF_FH_JSI12i_2	50.04	28.512			2.0696	2.3268	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0696	2.3268	NaN	1	1	Median	15336000	7081900	8254200	0	0	0	0	0	0	0	0	0	15336000	7081900	8254200	57249	3416	53924	348247	469851	469851			1	
VVNAPIFHVNSDDPEAVMYVCK	1	Unmodified	2503.1876	0.18756613	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	81.863	81.337	3	8.5961E-14	70472	160511_QHF_FH_JSI12i_3	123.19	114.59			1.1036	1.072	29.007	5	1	Median	NaN	NaN	NaN	0	0	Median	0.78023	0.95376	NaN	1	0	Median	1.0098	0.99422	10.659	2	1	Median	1.4982	1.5783	22.838	2	0	Median	290910000	133660000	157240000	0	0	0	39013000	18226000	20787000	117190000	55943000	61248000	134700000	59497000	75206000	57250	2185	53925	348248;348249;348250;348251;348252	469852;469853;469854;469855;469856;469857;469858;469859;469860;469861	469859			10	
VVNAVLTQIDQIK	1	Unmodified	1439.8348	0.83477916	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.69	5.99	7	9	2				3	5		7	8	7	4	74.925	71.198	2;3	1.0955E-07	64299	160511_QHF_FH_JSI10i_2	134.99	113.36			1.0159	1.0703	43.43	26	7	Median	1.0501	0.8718	40.074	7	5	Median	0.85694	1.0161	57.661	8	1	Median	1.129	1.1229	34.879	7	1	Median	0.98372	1.1298	14.976	4	0	Linear	2526400000	1317800000	1208600000	517780000	266980000	250800000	706290000	411680000	294610000	800530000	384280000	416240000	501790000	254880000	246910000	57251	2692	53926	348253;348254;348255;348256;348257;348258;348259;348260;348261;348262;348263;348264;348265;348266;348267;348268;348269;348270;348271;348272;348273;348274;348275;348276;348277;348278	469862;469863;469864;469865;469866;469867;469868;469869;469870;469871;469872;469873;469874;469875;469876;469877;469878;469879;469880;469881;469882;469883;469884;469885;469886;469887;469888;469889;469890;469891;469892;469893;469894;469895;469896;469897;469898;469899;469900	469899			39	
VVNAVLTQIDQIKR	1	Unmodified	1595.9359	0.93589019	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				63.579	62.071	3	0.0037136	50984	160511_QHF_FH_JSI9i_3	45.614	33.638			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57252	2692	53927	348279	469901	469901			1	
VVNGAAASQPPSK	1	Unmodified	1224.6463	0.64625011	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	12.124	11.87	2	2.5363E-05	9749	160511_QHF_FH_JSI12i_1	142.1	93.3			1.1483	1.2067	12.616	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1483	1.3362	NaN	1	0	Median	1.2415	1.2067	NaN	1	0	Median	0.99163	1.0398	NaN	1	0	Median	369520000	173020000	196500000	0	0	0	121600000	57802000	63799000	124310000	55755000	68559000	123600000	59461000	64141000	57253	542	53928	348280;348281;348282	469902;469903;469904;469905;469906;469907	469905			6	
VVNGPEILNK	1	Unmodified	1081.6132	0.61315906	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	39.976	39.133	2	0.00038857	33509	160511_QHF_FH_JSI12i_2	76.1	67.237			0.94872	0.99015	23.519	5	1	Median	1.1191	0.99015	NaN	1	0	Median	1.0593	1.272	27.276	2	1	Median	0.94872	0.95501	NaN	1	0	Median	0.75715	0.82042	NaN	1	0	Median	256260000	125130000	131130000	46190000	20014000	26177000	80593000	37309000	43284000	72111000	36982000	35128000	57367000	30826000	26541000	57254	1586	53929	348283;348284;348285;348286;348287	469908;469909;469910;469911;469912	469909			5	
VVNHSPQPQNVVFDVQIPK	1	Unmodified	2144.1378	0.13783747	84	CON__Q9TRI1			yes	yes	0	0	0	0				By MS/MS	3	0			1										1	68.412	68.114	3	4.8311E-05	58934	160511_QHF_FH_JSI12i_3	64.2	54.669		+	0.93387	0.94197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93387	0.94197	NaN	1	0	Median	35615000	17115000	18500000	0	0	0	0	0	0	0	0	0	35615000	17115000	18500000	57255	84	53930	348288	469913	469913			1	
VVNIVPVIAK	1	Unmodified	1050.6801	0.68011642	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.18	4	4	2				3	3		3	5	4	4	69.586	65.043	2	8.0762E-05	56199	160511_QHF_FH_JSI12i_2	87.181	78.236			0.94058	1.0705	22.809	16	2	Median	1.323	1.1305	25.492	3	1	Median	0.92004	1.1075	18.531	5	1	Median	0.84771	0.84615	22.723	4	0	Median	0.91751	1.0082	14.459	4	0	Median	1269700000	637800000	631940000	235330000	98697000	136640000	333250000	176210000	157040000	414490000	203780000	210700000	286670000	159110000	127560000	57256	5298	53931	348289;348290;348291;348292;348293;348294;348295;348296;348297;348298;348299;348300;348301;348302;348303;348304	469914;469915;469916;469917;469918;469919;469920;469921;469922;469923;469924;469925;469926;469927;469928;469929;469930;469931;469932;469933;469934	469917			20	
VVNLGIPTLLYGLGSWLFAR	0	Unmodified	2188.2408	0.24084598	33	A6NNL5	C15orf61	Uncharacterized protein C15orf61	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			103	97.279	2;3	6.2454E-25	57565	160513_QHF_FH_JSI10Kac_6	148.52	109.3			0.955	1.1423	17.242	2	1	Median	NaN	NaN	NaN	0	0	Median	0.955	1.1423	17.242	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	469700000	258890000	210810000	0	0	0	469700000	258890000	210810000	0	0	0	0	0	0	57257	33	53932	348305;348306	469935;469936;469937	469935			3	
VVNLGVLAQK	1	Unmodified	1039.639	0.63897988	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0				By MS/MS	2.5	0.5		1	1										2	56.581	55.779	2	4.393E-05	47826	160511_QHF_FH_JSI12i_3	94.114	67.152			0.99157	1.035	6.9648	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99157	1.035	6.9648	2	0	Median	97773000	45884000	51889000	0	0	0	0	0	0	0	0	0	97773000	45884000	51889000	57258	3676	53933	348307;348308	469938;469939;469940	469939			3	
VVNMHPQDFK	1	Unmodified	1213.5914	0.59137776	4736	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2.5	0.5		2	2							1		2	1	28.776	28.413	3	0.015613	24596	160511_QHF_FH_JSI9i_2	38.791	32.948			0.70913	0.74602	37.035	4	1	Linear	2.1346	1.7633	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84478	0.8425	18.544	2	0	Median	0.91921	0.94277	NaN	1	0	Median	233170000	116470000	116700000	35021000	4212300	30809000	0	0	0	134030000	72458000	61570000	64121000	39802000	24319000	57259	4736	53934	348309;348310;348311;348312	469941;469942;469943;469944	469942			4	
VVNNDHFLYWGEVSR	0	Unmodified	1833.8798	0.87983187	4974	Q9NRY4	ARHGAP35	Rho GTPase-activating protein 35	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	64.016	63.871	3	0.00039716	56717	160511_QHF_FH_JSI11i_3	73.464	63.543			1.8182	1.8297	54.939	4	3	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92515	0.88423	88.587	2	1	Median	1.2237	1.2418	7.3439	2	2	Median	252880000	120610000	132280000	0	0	0	0	0	0	101820000	59515000	42304000	151070000	61093000	89973000	57260	4974	53935	348313;348314;348315;348316	469945;469946;469947;469948;469949	469946			5	
VVNPLFEK	1	Unmodified	944.53312	0.53311783	2007	P62424	RPL7A	60S ribosomal protein L7a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.88	5.93	4	4	3				2	3		3	5	5	3	53.199	48.948	2	0.0006504	42981	160511_QHF_FH_JSI11i_3	96.492	50.121			1.1405	1.1577	11.895	15	0	Median	1.4886	1.2029	10.547	3	0	Median	1.0712	1.2784	11.576	5	0	Median	1.1642	1.141	9.6633	4	0	Median	0.94929	1.03	1.6992	3	0	Median	12220000000	5475300000	6745200000	2441600000	975530000	1466000000	3060100000	1469500000	1590600000	4181700000	1717200000	2464400000	2537000000	1313000000	1224100000	57261	2007	53936	348317;348318;348319;348320;348321;348322;348323;348324;348325;348326;348327;348328;348329;348330;348331;348332	469950;469951;469952;469953;469954;469955;469956;469957;469958;469959;469960;469961;469962;469963;469964;469965;469966;469967;469968;469969;469970;469971;469972;469973;469974;469975;469976	469950			27	
VVNPYYLR	0	Unmodified	1022.5549	0.5549159	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	42.461	41.494	2	0.0035933	35704	160511_QHF_FH_JSI11i_2	71.378	52.647			0.95363	0.97552	5.9381	3	0	Plateau	1.1503	0.97552	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95363	0.95917	NaN	1	0	Median	0.97944	1.071	NaN	1	0	Median	253630000	141030000	112600000	52272000	23655000	28617000	0	0	0	117720000	71536000	46183000	83644000	45842000	37801000	57262	2356	53937	348333;348334;348335	469977	469977			1	
VVNQLLTEMDGLEAR	0	Unmodified	1686.8611	0.86107026	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.433	2	6								1	2	3	2	80.634	79.956	2;3	4.5579E-10	69072	160511_QHF_FH_JSI12i_2	151.1	127.11			1.1328	1.1377	23.389	8	3	Median	1.6755	1.4454	NaN	1	1	Median	0.86676	1.043	41.299	2	1	Median	1.1597	1.104	9.076	3	1	Median	0.89774	0.98246	30.133	2	0	Median	266270000	139840000	126430000	19726000	6470800	13255000	71464000	43948000	27516000	112460000	55359000	57102000	62620000	34064000	28556000	57263	285	53938	348336;348337;348338;348339;348340;348341;348342;348343	469978;469979;469980;469981;469982;469983;469984;469985;469986	469980			8	
VVNSETPVVVDFHAQWCGPCK	1	Unmodified	2428.1304	0.13038561	4313	Q99757	TXN2	Thioredoxin, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	72.538	72.391	3	1.0836E-06	62793	160511_QHF_FH_JSI12i_3	77.08	64.042			1.0908	1.0674	59.205	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74688	0.7023	NaN	1	1	Median	1.5931	1.6224	NaN	1	0	Median	53052000	24928000	28124000	0	0	0	0	0	0	19580000	13797000	5783200	33472000	11131000	22340000	57264	4313	53939	348344;348345	469987;469988;469989	469989			3	
VVNSILAFR	0	Unmodified	1017.5971	0.59711507	2203	Q03154	ACY1	Aminoacylase-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	60.937	60.34	2	0.035309	52048	160511_QHF_FH_JSI12i_3	39.022	21.174			0.99708	1.0479	10.674	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.94942	1.0479	NaN	1	0	Median	0.97328	0.87843	NaN	1	0	Median	0.99708	1.0647	NaN	1	0	Median	111290000	49282000	62005000	0	0	0	30224000	10933000	19291000	33570000	16413000	17157000	47493000	21937000	25557000	57265	2203	53940	348346;348347;348348	469990;469991	469991			2	
VVNSYPLAHK	1	Unmodified	1126.6135	0.61349341	5301	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	20.591	20.591	3	1.5383E-05	17349	160511_QHF_FH_JSI11i_3	90.108	76.339			1.4244	1.3845	7.9685	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3645	1.3086	NaN	1	0	Median	1.487	1.4647	NaN	1	0	Median	397710000	179440000	218280000	0	0	0	0	0	0	178700000	67041000	111660000	219010000	112400000	106610000	57266	5301	53941	348349;348350	469992;469993;469994	469992			3	
VVNTDHGSPEQLQIPVTDSGR	0	Unmodified	2248.1084	0.10838784	3061	Q6IQ49	SDE2	Protein SDE2 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	51.43	50.034	3	1.8241E-05	42833	160511_QHF_FH_JSI12i_2	67.11	62.108			1.0036	1.0997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0036	1.0997	NaN	1	1	Median	37110000	20408000	16701000	0	0	0	0	0	0	0	0	0	37110000	20408000	16701000	57267	3061	53942	348351	469995	469995			1	
VVNTSDPDMR	0	Unmodified	1132.5183	0.5182724	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.412	15.939	2	0.00077936	13169	160511_QHF_FH_JSI9i_1	69.825	64.083			1.0599	0.9934	12.525	4	1	Median	1.1574	0.94474	NaN	1	0	Median	0.85379	0.99437	NaN	1	0	Median	1.3065	1.2493	NaN	1	0	Median	0.97055	0.99243	NaN	1	1	Median	148790000	80571000	68224000	34500000	20392000	14108000	41483000	25139000	16344000	46651000	23170000	23481000	26160000	11870000	14290000	57268	4892	53943	348352;348353;348354;348355	469996;469997;469998;469999;470000;470001	470001			6	
VVNVANVGAVPSGQDNIHR	0	Unmodified	1945.013	0.012971308	107	O00203	AP3B1	AP-3 complex subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.23	4.64	2	4	5					2		1	3	6	3	46.847	44.523	2;3	7.1768E-25	39394	160511_QHF_FH_JSI11i_3	143.86	103.94			1.0727	1.0814	11.822	12	2	Median	1.2684	1.0946	NaN	1	0	Median	1.0728	1.2514	12.238	3	0	Median	1.0726	1.0472	11.046	5	2	Median	0.98418	1.0684	14.916	3	0	Median	2499200000	1178100000	1321100000	189010000	79095000	109910000	378570000	200730000	177840000	1333200000	614000000	719180000	598420000	284300000	314120000	57269	107	53944	348356;348357;348358;348359;348360;348361;348362;348363;348364;348365;348366;348367;348368	470002;470003;470004;470005;470006;470007;470008;470009;470010;470011;470012;470013;470014;470015;470016;470017;470018;470019	470004			17	
VVNVELPIEANLVWQLGK	1	Unmodified	2020.1357	0.13571221	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		6									1	3	2	101.96	101.83	2;3	3.2741E-23	89614	160511_QHF_FH_JSI11i_2	220.9	193.23			1.0795	1.1417	13.234	6	4	Median	NaN	NaN	NaN	0	0	Median	0.88699	1.0974	NaN	1	0	Median	1.2499	1.2395	6.1676	3	2	Median	0.89209	1.0021	16.21	2	2	Median	856480000	413940000	442540000	0	0	0	101470000	53730000	47741000	522220000	237150000	285070000	232790000	123050000	109730000	57270	3852	53945	348369;348370;348371;348372;348373;348374	470020;470021;470022;470023;470024;470025;470026	470022			7	
VVNVSSIMSVR	0	Unmodified	1189.6489	0.64889264	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.57		1	4						4	2	3	2	2	67.144	62.765	2	5.6131E-06	52662	160511_QHF_FH_JSI10i_3	127.4	111.19			1.0449	1.0745	17.258	9	1	Median	1.4388	1.1828	18.18	2	0	Median	0.93286	1.0691	23.862	3	1	Plateau	1.1294	1.0488	12.087	2	0	Median	0.96085	1.0124	8.4152	2	0	Median	4603300000	2167900000	2435300000	844130000	303900000	540230000	1577900000	765600000	812300000	924230000	457300000	466930000	1257000000	641140000	615880000	57271	1092	53946	348375;348376;348377;348378;348379;348380;348381;348382;348383	470027;470028;470029;470030;470031;470032;470033;470034;470035;470036	470028			10	
VVNVSSIMSVR	0	Oxidation (M)	1205.6438	0.64380726	1092	P16152	CBR1	Carbonyl reductase [NADPH] 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.2	4.42			2				3	4	4	3	3	3	4	51.506	42.092	2	0.0018219	21508	160513_QHF_FH_JSI10Kac_5	71.614	55.732			1.8572	1.0597	21.981	12	1	Linear	1.9314	1.6191	37.488	3	1	Plateau	0.85538	1.022	15.244	3	0	Median	1.0552	1.0467	21.813	3	0	Median	0.99007	1.0728	11.391	3	0	Median	286510000	130660000	155840000	135760000	56383000	79373000	58360000	30736000	27624000	62374000	29412000	32962000	30016000	14133000	15883000	57272	1092	53946	348384;348385;348386;348387;348388;348389;348390;348391;348392;348393;348394;348395;348396	470037;470038;470039;470040;470041;470042;470043;470044;470045;470046;470047;470048;470049;470050;470051;470052	470046		740	16	
VVPAYVPTPIHPIFGGATHSAFGLK	1	Unmodified	2575.3951	0.39511479	4105	Q96HA1	POM121	Nuclear envelope pore membrane protein POM 121	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	90.618	90.058	4	3.6008E-09	77400	160511_QHF_FH_JSI12i_3	75.539	71.828			1.0318	0.98732	5.3146	4	0	Median	1.2045	0.98926	NaN	1	0	Median	0.78175	0.91236	NaN	1	0	Median	1.0312	0.98539	NaN	1	0	Median	1.0324	1.0374	NaN	1	0	Median	208070000	107610000	100460000	20884000	9213100	11671000	18070000	10792000	7278100	81267000	38922000	42344000	87846000	48678000	39168000	57273	4105	53947	348397;348398;348399;348400	470053;470054;470055;470056;470057;470058	470058			6	
VVPCLVTPVTGR	0	Unmodified	1296.7224	0.72239194	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.25	0.433		3	1							1	1	2		61.668	61.086	2	0.0074692	53677	160511_QHF_FH_JSI9i_2	51.092	44.789			0.68407	0.76059	30.911	4	1	Median	1.0947	0.94359	NaN	1	0	Median	0.77776	0.96446	NaN	1	0	Median	0.59015	0.56554	11.417	2	1	Median	NaN	NaN	NaN	0	0	Median	264930000	144790000	120140000	44972000	18691000	26281000	69428000	32987000	36441000	150530000	93112000	57415000	0	0	0	57274	512	53948	348401;348402;348403;348404	470059;470060;470061;470062	470060			2	
VVPDPNVIK	1	Unmodified	979.57023	0.57023162	5017;5423	Q9NUU7;Q9UMR2	DDX19A;DDX19B	ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		43.687	43.014	2	0.0030629	38205	160511_QHF_FH_JSI9i_1	61.962	42.176			0.50858	0.33269	73.104	3	1	Plateau	0.87739	0.71195	NaN	1	0	Median	1.0132	1.2017	NaN	1	1	Median	0.2948	0.28358	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1451600000	859430000	592180000	393550000	214340000	179210000	476070000	273650000	202410000	581980000	371430000	210550000	0	0	0	57275	5017;5423	53949	348405;348406;348407	470063;470064;470065	470065			3	
VVPEMTEILK	1	Unmodified	1157.6366	0.63659662	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							2	2	3	2	70.879	70.249	2	1.4201E-07	64084	160511_QHF_FH_JSI11i_1	120.15	105.38			0.86618	0.92644	9.1021	9	0	Median	1.0251	0.85742	12.43	2	0	Median	0.83051	1.0052	5.5783	2	0	Median	0.87585	0.8741	6.8197	3	0	Plateau	0.83811	0.90796	4.1192	2	0	Median	2692900000	1330700000	1362100000	482260000	204380000	277890000	612650000	323480000	289180000	958420000	452490000	505930000	639520000	350360000	289150000	57276	1041	53950	348408;348409;348410;348411;348412;348413;348414;348415;348416	470066;470067;470068;470069;470070;470071;470072;470073;470074;470075;470076;470077;470078;470079;470080;470081;470082;470083;470084;470085;470086;470087	470069			22	
VVPGFIVQGGDPTGTGSGGESIYGAPFK	1	Unmodified	2693.3337	0.33369632	3156	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		94.11	93.807	3	0.019865	82409	160511_QHF_FH_JSI11i_2	23.62	20.405			1.1591	1.0992	9.794	2	0	Median	1.3697	1.1781	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98081	1.0257	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	42001000	21966000	20036000	19986000	10955000	9031300	0	0	0	22015000	11011000	11004000	0	0	0	57277	3156	53951	348417;348418	470088;470089	470089			2	
VVPGYGHAVLR	0	Unmodified	1166.656	0.65602693	517	O75390	CS	Citrate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	5.88		3	8						4	4	4	4	3	37.123	33.968	2;3	7.9713E-08	27796	160511_QHF_FH_JSI9i_3	100.48	78.391			0.92123	1.0092	17.033	14	1	Median	1.2326	0.9666	18.21	3	0	Plateau	1.0576	1.0193	20.327	4	1	Linear	1.0008	0.93699	13.78	4	0	Median	0.8441	0.86841	16.354	3	0	Median	4735500000	2552000000	2183500000	1814300000	876440000	937840000	1235700000	761110000	474580000	951480000	507280000	444190000	734090000	407210000	326880000	57278	517	53952	348419;348420;348421;348422;348423;348424;348425;348426;348427;348428;348429;348430;348431;348432;348433	470090;470091;470092;470093;470094;470095;470096;470097;470098;470099;470100;470101;470102;470103;470104;470105;470106;470107;470108;470109;470110;470111;470112	470104			23	
VVPHVVMQYNFDFSK	1	Unmodified	1808.892	0.89197646	405	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	77.22	76.954	3	0.0005254	66759	160511_QHF_FH_JSI12i_3	56.648	39.429			0.97434	0.98545	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97434	0.98545	NaN	1	0	Median	36497000	19854000	16643000	0	0	0	0	0	0	0	0	0	36497000	19854000	16643000	57279	405	53953	348434	470113	470113			1	
VVPIASLTPYQSK	1	Unmodified	1401.7868	0.78676633	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.74	4	4					2	1		2	3	2	4	67.191	64.469	2	9.7452E-05	58794	160511_QHF_FH_JSI11i_1	94.363	85.876			1.0643	1.0343	12.058	9	1	Median	1.1887	0.99491	5.4873	2	0	Median	0.80203	0.96162	15.408	2	0	Median	1.1749	1.1435	2.795	2	0	Median	0.88862	0.97559	16.572	3	1	Median	871580000	458600000	412990000	143190000	70605000	72589000	213330000	125880000	87448000	290180000	148680000	141500000	224880000	113430000	111450000	57280	1293	53954	348435;348436;348437;348438;348439;348440;348441;348442;348443;348444;348445	470114;470115;470116;470117;470118;470119;470120;470121;470122;470123	470114			9	
VVPINTPTAAVDQTLFPGK	1	Unmodified	1967.0728	0.072777598	4878	Q9NNW5	WDR6	WD repeat-containing protein 6	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				86.879	86.056	3	0.022263	76600	160511_QHF_FH_JSI9i_1	32.627	26.646			1.773	1.4471	NaN	1	1	Median	1.773	1.4471	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14793000	4831900	9960900	14793000	4831900	9960900	0	0	0	0	0	0	0	0	0	57281	4878	53955	348446	470124	470124			1	
VVPLADIITPNQFEAELLSGRK	1	Unmodified	2409.3268	0.32676045	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							3	3	4	2	101.53	101.46	3;4	5.6004E-58	90569	160511_QHF_FH_JSI11i_3	215.06	197.7			0.98334	0.9843	13.699	12	0	Median	1.2617	1.0779	17.073	3	0	Median	0.98455	1.0295	10.45	3	0	Plateau	0.98346	0.95569	15.398	4	0	Median	0.9048	0.92024	7.058	2	0	Median	6664900000	3507200000	3157600000	758920000	332430000	426490000	1424800000	742490000	682360000	2630700000	1350900000	1279800000	1850400000	1081400000	768990000	57282	165	53956	348447;348448;348449;348450;348451;348452;348453;348454;348455;348456;348457;348458	470125;470126;470127;470128;470129;470130;470131;470132;470133;470134;470135;470136;470137;470138;470139;470140;470141;470142	470126			18	
VVPLHSLK	1	Unmodified	891.55419	0.55418762	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							1	1		2	27.014	26.111	3	0.0007276	21489	160511_QHF_FH_JSI12i_3	79.474	61.439			1.0325	1.0863	3.2638	3	1	Median	1.3112	1.0863	NaN	1	0	Median	0.95222	1.0981	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0325	1.0329	NaN	1	1	Median	268530000	124940000	143590000	75119000	29023000	46096000	71286000	35358000	35928000	0	0	0	122130000	60558000	61568000	57283	1615	53957	348459;348460;348461;348462	470143;470144;470145;470146	470145			4	
VVPLSQR	0	Unmodified	797.47594	0.4759373	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0	By MS/MS				1.5	0.5	1	1								2				73.331	72.466	2	0.01374	64525	160511_QHF_FH_JSI9i_1	69.234	22.467			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113560000	113560000	0	113560000	113560000	0	0	0	0	0	0	0	0	0	0	57284	2386	53958	348463;348464	470147;470148	470147			2	
VVPLVQMGETDANVAK	1	Unmodified	1669.8709	0.87090667	4065	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	66.829	66.229	2	0.00012866	60405	160511_QHF_FH_JSI12i_1	105.65	93.436			0.88024	0.80428	15.478	4	2	Median	0.8711	0.71973	NaN	1	1	Median	0.68113	0.76872	NaN	1	1	Median	0.88947	0.84149	NaN	1	0	Median	0.95708	1.0273	NaN	1	0	Median	169690000	104430000	65263000	46276000	31258000	15018000	32352000	21527000	10825000	51104000	29345000	21759000	39960000	22300000	17660000	57285	4065	53959	348465;348466;348467;348468	470149;470150;470151;470152	470150			4	
VVPLYGR	0	Unmodified	802.47012	0.47012364	4328	Q99942	RNF5	E3 ubiquitin-protein ligase RNF5	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			33.815	32.415	2	0.035371	27043	160511_QHF_FH_JSI10i_3	49.669	30.714			1.0442	1.2067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0442	1.2067	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41812000	23119000	18693000	0	0	0	41812000	23119000	18693000	0	0	0	0	0	0	57286	4328	53960	348469	470153;470154	470154			2	
VVPPLDEDGR	0	Unmodified	1095.556	0.55603811	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	36.352	35.746	2	8.8468E-05	32146	160511_QHF_FH_JSI11i_1	85.731	73.684			1.0219	1.0671	19.283	4	1	Median	1.0186	0.83785	NaN	1	1	Median	1.0253	1.2237	NaN	1	0	Median	1.245	1.2227	NaN	1	0	Median	0.88174	0.93126	NaN	1	0	Median	796740000	358320000	438420000	122080000	63715000	58365000	225540000	93328000	132220000	244370000	101560000	142810000	204750000	99716000	105030000	57287	1252	53961	348470;348471;348472;348473;348474	470155;470156;470157	470155			3	
VVPPLDEDGRSLLSQMLHYDPNK	1	Unmodified	2622.3112	0.31118674	1252	P24941	CDK2	Cyclin-dependent kinase 2	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	100.88	100.88	4	7.575E-10	89891	160511_QHF_FH_JSI11i_3	96.131	89.179			1.199	1.1662	14.028	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1212	1.0561	NaN	1	0	Median	1.2823	1.2878	NaN	1	0	Median	184530000	79535000	105000000	0	0	0	0	0	0	105840000	53022000	52819000	78693000	26513000	52180000	57288	1252	53962	348475;348476	470158;470159	470158			2	
VVPPSPMTDPTMLTDMMK	1	Unmodified	1989.9284	0.92836325	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									3	2	3	3	100.84	100.73	2;3	4.5435E-11	91415	160511_QHF_FH_JSI11i_1	164.68	145.58			1.0244	1.0038	6.99	10	6	Median	1.2325	1.0023	11.157	2	1	Median	0.7596	0.91017	5.1009	2	1	Median	1.0407	0.99304	3.1314	3	2	Median	1.0083	1.0594	3.1275	3	2	Median	1260700000	637740000	622960000	287600000	130530000	157070000	195650000	115070000	80580000	398770000	189220000	209550000	378680000	202910000	175760000	57289	5179	53963	348477;348478;348479;348480;348481;348482;348483;348484;348485;348486;348487	470160;470161;470162;470163;470164;470165;470166;470167;470168;470169;470170;470171;470172;470173;470174	470163			15	
VVPQIPVK	1	Unmodified	878.55894	0.55893865	5551	Q9Y303	AMDHD2	Putative N-acetylglucosamine-6-phosphate deacetylase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		47.605	47.194	2	0.015981	42705	160511_QHF_FH_JSI11i_1	48.504	36.599			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57290	5551	53964	348488	470175	470175			1	
VVPQQITHTSPR	0	Unmodified	1361.7415	0.74154747	4630	Q9H0E3	SAP130	Histone deacetylase complex subunit SAP130	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		24.458	23.586	3	5.9239E-05	19505	160511_QHF_FH_JSI10i_3	77.279	66.28			0.79898	0.91899	26	3	0	Median	1.4467	1.171	NaN	1	0	Median	0.79898	0.91899	NaN	1	0	Median	0.7299	0.69647	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	124470000	66923000	57544000	36828000	16082000	20746000	51101000	30999000	20102000	36537000	19841000	16696000	0	0	0	57291	4630	53965	348489;348490;348491	470176;470177;470178;470179	470178			4	
VVPSDLYPLVLGFLR	0	Unmodified	1686.9709	0.97087871	2586	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.32		9	8						8	6	6	7	6	101.8	99.041	2;3	2.6083E-11	51599	160513_QHF_FH_JSI11Kac_6	162.38	149.8			1.0606	1.0463	10.008	25	4	Median	1.2299	1.0394	14.447	6	2	Median	0.85734	1.0101	5.7002	6	0	Median	1.1051	1.0867	3.2047	7	2	Median	0.93622	1.0405	13.472	6	0	Median	7627200000	3794100000	3833100000	979160000	453790000	525360000	1257700000	681040000	576640000	2935400000	1399400000	1536000000	2455000000	1259900000	1195100000	57292	2586	53966	348492;348493;348494;348495;348496;348497;348498;348499;348500;348501;348502;348503;348504;348505;348506;348507;348508;348509;348510;348511;348512;348513;348514;348515;348516	470180;470181;470182;470183;470184;470185;470186;470187;470188;470189;470190;470191;470192;470193;470194;470195;470196;470197;470198;470199;470200;470201;470202;470203;470204;470205;470206;470207;470208;470209;470210;470211;470212;470213;470214;470215;470216;470217	470190			38	
VVPSFLPVDQGGSLVGR	0	Unmodified	1725.9414	0.94136949	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.595	1	7	4							2	2	5	3	87.917	87.53	2;3	4.4968E-11	78237	160511_QHF_FH_JSI11i_3	151.1	131.26			1.024	1.029	13.429	12	1	Median	1.1859	0.99401	3.4451	2	0	Median	0.89813	1.099	6.523	2	0	Median	1.0017	1.0148	19.746	5	1	Median	1.0467	1.0396	8.2081	3	0	Median	650550000	317590000	332960000	88558000	38191000	50367000	114830000	62505000	52327000	290290000	141250000	149040000	156870000	75643000	81222000	57293	2493	53967	348517;348518;348519;348520;348521;348522;348523;348524;348525;348526;348527;348528	470218;470219;470220;470221;470222;470223;470224;470225;470226;470227;470228;470229;470230;470231;470232;470233;470234;470235;470236;470237;470238	470219			21	
VVPSYMQAVNR	0	Unmodified	1262.6441	0.64414162	3741	Q8TEX9	IPO4	Importin-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	45.776	44.901	2	3.77E-07	39590	160511_QHF_FH_JSI11i_3	118.33	100.43			0.96984	1.0481	21.726	5	0	Median	1.613	1.2907	NaN	1	0	Median	0.72245	0.86279	27.521	2	0	Median	1.1338	1.0661	NaN	1	0	Median	0.96984	0.98283	NaN	1	0	Median	509560000	266960000	242610000	54093000	19714000	34379000	176140000	103840000	72296000	109900000	48893000	61003000	169430000	94504000	74928000	57294	3741	53968	348529;348530;348531;348532;348533	470239;470240;470241;470242;470243;470244;470245;470246;470247	470240			9	
VVPTFEAVAPQSR	0	Unmodified	1399.746	0.74596415	629	O94927	HAUS5	HAUS augmin-like complex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	57.937	57.013	2	0.00054127	49422	160511_QHF_FH_JSI11i_2	84.658	57.544			0.70975	0.74172	14.95	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82837	0.82442	NaN	1	0	Median	0.60811	0.66732	NaN	1	1	Median	55230000	32558000	22672000	0	0	0	0	0	0	33531000	19444000	14088000	21699000	13115000	8584400	57295	629	53969	348534;348535;348536	470248;470249;470250;470251	470251			4	
VVPTPNNGSTELVALHR	0	Unmodified	1802.9639	0.96389585	4868	Q9HD20	ATP13A1	Manganese-transporting ATPase 13A1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	53.269	52.671	3	4.4328E-05	45167	160511_QHF_FH_JSI12i_3	72.184	65.603			0.87894	0.84248	5.639	3	0	Median	NaN	NaN	NaN	0	0	Median	0.73877	0.84248	NaN	1	0	Median	0.87894	0.8395	NaN	1	0	Median	0.90781	0.92723	NaN	1	0	Median	186540000	85711000	100830000	0	0	0	34735000	11694000	23041000	82874000	39753000	43121000	68933000	34264000	34669000	57296	4868	53970	348537;348538;348539	470252;470253	470253			1	
VVPTTDHIDTEK	1	Unmodified	1353.6776	0.67760981	554	O75663	TIPRL	TIP41-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	5.06	1	6					2			1	2	2	4	27.056	24.331	2;3	9.442E-06	20312	160511_QHF_FH_JSI12i_2	102.87	97.03			0.86363	0.96473	49.841	9	6	Median	1.3159	1.1125	NaN	1	0	Median	1.4579	1.788	94.953	2	2	Median	0.87237	0.84704	21.278	2	1	Median	0.79675	0.86123	31.816	4	3	Median	474070000	240480000	233590000	75983000	31835000	44147000	71692000	38780000	32913000	178930000	95342000	83591000	147460000	74518000	72943000	57297	554	53971	348540;348541;348542;348543;348544;348545;348546;348547;348548	470254;470255;470256;470257;470258;470259;470260;470261;470262	470255			9	
VVPTVYMK	1	Unmodified	935.51502	0.51502492	5501	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	44.981	44.122	2	0.001083	38851	160511_QHF_FH_JSI10i_2	94.262	75.531			0.95842	0.92832	8.2902	5	0	Median	0.97993	0.84017	NaN	1	0	Median	0.72828	0.88722	NaN	1	0	Median	0.98812	0.95935	4.649	2	0	Median	0.89487	1.0325	NaN	1	0	Median	569310000	284310000	285000000	114550000	52068000	62484000	127060000	69454000	57605000	193370000	91466000	101900000	134330000	71324000	63008000	57298	5501	53972	348549;348550;348551;348552;348553	470263;470264;470265;470266;470267	470267			5	
VVPVRLDLTEK	1	Unmodified	1267.75	0.7499869	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	55.145	54.253	3	0.0050138	46437	160511_QHF_FH_JSI12i_3	35.594	16.495			0.97573	1.0511	41.631	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67895	0.78308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4022	1.4109	NaN	1	0	Median	720910000	308240000	412670000	0	0	0	359390000	163230000	196160000	0	0	0	361510000	145000000	216510000	57299	3891	53973	348554;348555	470268;470269	470269			2	
VVQDAQTFAEWK	1	Unmodified	1420.6987	0.69867961	1107	P17050	NAGA	Alpha-N-acetylgalactosaminidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.168	53.65	2	0.0023394	46415	160511_QHF_FH_JSI11i_2	59.542	38.672			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57300	1107	53974	348556	470270	470270			1	
VVQDLSGEHMGAVWTMK	1	Unmodified	1886.9019	0.90188922	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	64.27	63.527	2;3	6.3487E-06	56216	160511_QHF_FH_JSI10i_2	94.384	84.635			0.87189	0.92329	56.141	6	3	Median	1.2178	1.048	NaN	1	0	Median	0.79367	0.97714	51.516	2	2	Median	0.53221	0.5148	87.068	2	1	Median	0.80627	0.89466	NaN	1	0	Median	1109400000	573460000	535900000	181210000	72699000	108510000	306770000	173380000	133390000	415220000	209350000	205870000	206160000	118040000	88122000	57301	2902	53975	348557;348558;348559;348560;348561;348562;348563	470271;470272;470273;470274;470275;470276;470277;470278;470279;470280	470278			10	
VVQDTYQIMK	1	Unmodified	1223.622	0.62200919	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	40.521	39.925	2	0.00032192	36315	160511_QHF_FH_JSI12i_1	78.149	53.012			1.0203	1.0186	11.039	4	2	Median	1.0841	0.93224	NaN	1	0	Median	1.0147	1.2121	NaN	1	1	Median	1.0259	1.0066	NaN	1	1	Median	0.97899	1.0307	NaN	1	0	Median	721880000	383430000	338450000	20008000	10395000	9613200	222540000	118240000	104310000	251630000	124820000	126810000	227700000	129980000	97722000	57302	225	53976	348564;348565;348566;348567;348568	470281;470282;470283;470284;470285;470286	470283			6	
VVQEENQHMQMTIQALQDELR	0	Unmodified	2539.2159	0.21590615	3395	Q8IUD2	ERC1	ELKS/Rab6-interacting/CAST family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	4	3	80.624	80.062	3	9.4218E-14	69520	160511_QHF_FH_JSI12i_3	125.09	117.19			0.96193	1.0574	26.466	6	1	Median	1.4008	1.237	NaN	1	0	Median	0.86288	1.0379	NaN	1	0	Median	0.77984	0.75894	20.699	2	1	Median	1.1651	1.22	17.605	2	0	Median	267500000	140900000	126610000	32958000	14121000	18837000	25958000	15501000	10457000	98628000	59661000	38967000	109960000	51613000	58345000	57303	3395	53977	348569;348570;348571;348572;348573;348574;348575;348576;348577	470287;470288;470289;470290;470291;470292;470293;470294;470295;470296;470297;470298;470299;470300	470299			14	
VVQEREDALR	0	Unmodified	1213.6415	0.64149908	4871	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		12.183	12.183	2;3	0.0031285	9749	160511_QHF_FH_JSI11i_3	73.985	26.162			1.0157	0.95125	7.7479	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0157	0.95125	7.7479	2	0	Median	NaN	NaN	NaN	0	0	Median	194690000	88545000	106150000	0	0	0	0	0	0	194690000	88545000	106150000	0	0	0	57304	4871	53978	348578;348579	470301;470302;470303;470304	470303			4	
VVQGDIGEANEDVTQIVEILHSGPSK	1	Unmodified	2733.3821	0.38210308	3377	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.6	0.49		2	3									2	3	100.88	100.82	3;4	1.8025E-74	87465	160511_QHF_FH_JSI12i_3	247.5	230.99			0.8089	0.83584	76.907	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.50424	0.49187	130.56	2	2	Median	0.51842	0.53938	53.563	3	1	Plateau	1150000000	760420000	389590000	0	0	0	0	0	0	363150000	250840000	112300000	786860000	509580000	277290000	57305	3377	53979	348580;348581;348582;348583;348584	470305;470306;470307;470308;470309	470309			5	
VVQGLFDNFLR	0	Unmodified	1306.7034	0.70337105	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		88.062	88.062	2	0.0085405	78586	160511_QHF_FH_JSI11i_3	73.233	54.139			0.794	0.76075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.794	0.76075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30060000	13340000	16720000	0	0	0	0	0	0	30060000	13340000	16720000	0	0	0	57306	3777	53980	348585	470310;470311	470310			2	
VVQHLGPATDFYKK	2	Unmodified	1601.8566	0.85657723	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			39.54	38.049	4	0.055352	31704	160511_QHF_FH_JSI10i_3	22.391	8.3074			0.6829	0.80389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6829	0.80389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16766000	11962000	4803800	0	0	0	16766000	11962000	4803800	0	0	0	0	0	0	57307	701	53981	348586	470312	470312			1	
VVQHSNVVINLIGR	0	Unmodified	1546.8944	0.89435972	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	65.639	56.691	2;3	3.4587E-17	31132	160513_QHF_FH_JSI10Kac_6	137.68	111.56			1.0049	0.98037	7.3675	5	0	Median	1.1264	0.98037	NaN	1	0	Median	0.82867	0.98203	5.156	2	0	Median	1.0049	0.97916	NaN	1	0	Median	1.0357	1.1446	NaN	1	0	Median	222290000	116130000	106160000	64485000	31692000	32793000	111540000	60882000	50663000	32334000	16318000	16016000	13924000	7234700	6689600	57308	2767	53982	348587;348588;348589;348590;348591	470313;470314;470315;470316	470316			4	
VVQISGLSATFAEIFLEIIQSSLPEGVR	0	Unmodified	3002.6328	0.63283846	4086	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		105.83	96.214	3	0.055764	46328	160513_QHF_FH_JSI11Kac_5	26.422	20.127			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	777630	0	777630	0	0	0	0	0	0	777630	0	777630	0	0	0	57309	4086	53983	348592	470317	470317			1	
VVQLDVRDNMVK	1	Unmodified	1414.7602	0.76023401	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	46.016	45.774	3	0.057545	39116	160511_QHF_FH_JSI12i_3	30.059	19.424			10.491	10.508	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10.491	10.508	NaN	1	1	Median	160100000	22292000	137810000	0	0	0	0	0	0	0	0	0	160100000	22292000	137810000	57310	736	53984	348593	470318	470318			1	
VVQLHEYSEELEK	1	Unmodified	1601.7937	0.7937022	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.81	4.25		11	3					2		3	3	5	5	45.816	43.575	2;3	1.771E-12	37278	160511_QHF_FH_JSI12i_2	123.8	87.841			0.91037	0.94513	38.77	14	7	Median	1.033	0.87899	46.92	3	2	Median	0.70463	0.86191	15.233	3	2	Plateau	1.0024	0.98122	27.33	4	1	Median	1.0578	1.1065	57.764	4	2	Median	1193600000	584490000	609090000	174790000	89880000	84905000	313210000	156120000	157090000	453550000	230630000	222920000	252030000	107850000	144180000	57311	2560	53985	348594;348595;348596;348597;348598;348599;348600;348601;348602;348603;348604;348605;348606;348607;348608;348609	470319;470320;470321;470322;470323;470324;470325;470326;470327;470328;470329;470330;470331;470332;470333;470334;470335;470336;470337;470338;470339	470324			21	
VVQMLGSLGGQINK	1	Unmodified	1442.7915	0.79153413	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.57	6	9	12						2	5	6	10	8	64.416	63.138	2;3	1.4647E-44	56150	160511_QHF_FH_JSI11i_3	252.42	222.67			1.23	1.2064	70.976	29	21	Median	1.3254	1.076	66.796	5	4	Median	1.2967	1.5126	54.031	6	2	Median	1.6835	1.66	84.735	10	9	Median	0.9002	1.0089	73.176	8	6	Median	5367000000	2616600000	2750500000	588230000	268760000	319470000	908240000	483510000	424740000	1918600000	891400000	1027200000	1951900000	972900000	979030000	57312	2094	53986	348610;348611;348612;348613;348614;348615;348616;348617;348618;348619;348620;348621;348622;348623;348624;348625;348626;348627;348628;348629;348630;348631;348632;348633;348634;348635;348636;348637;348638	470340;470341;470342;470343;470344;470345;470346;470347;470348;470349;470350;470351;470352;470353;470354;470355;470356;470357;470358;470359;470360;470361;470362;470363;470364;470365;470366;470367;470368;470369;470370;470371;470372;470373;470374;470375;470376;470377;470378;470379;470380;470381;470382;470383;470384;470385	470341			46	
VVQMLGSLGGQINK	1	Oxidation (M)	1458.7864	0.78644876	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0				By MS/MS	3	0			2										2	47.666	47.426	2	0.0012427	40516	160511_QHF_FH_JSI12i_3	103.08	79.478			0.95628	1.0077	78.09	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95628	1.0077	78.09	2	2	Median	42113000	21917000	20196000	0	0	0	0	0	0	0	0	0	42113000	21917000	20196000	57313	2094	53986	348639;348640	470386;470387	470386		1779	2	
VVQNDAYTAPALPSSIR	0	Unmodified	1800.937	0.9370124	4538	Q9BY77	POLDIP3	Polymerase delta-interacting protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	59.758	59.021	2;3	0.00016939	53408	160511_QHF_FH_JSI11i_1	73.877	49.024			1.0735	1.0212	26.042	5	0	Median	1.239	1.0231	19.05	2	0	Median	0.64596	0.77606	NaN	1	0	Median	1.5807	1.5295	NaN	1	0	Median	0.99445	1.0212	NaN	1	0	Median	458060000	225990000	232070000	218380000	96729000	121660000	81879000	50622000	31257000	61040000	28640000	32399000	96758000	49999000	46760000	57314	4538	53987	348641;348642;348643;348644;348645	470388;470389;470390;470391	470388			4	
VVQPQEEIATKK	2	Acetyl (K)	1410.7718	0.77184455	4115	Q96HW7	INTS4	Integrator complex subunit 4	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						5					3	2		46.023	36.783	2;3	0.023925	19761	160513_QHF_FH_JSI10Kac_3	66.595	51.33			1.0285	1.0828	32.328	4	0	Median	NaN	NaN	NaN	0	0	Median	0.7081	0.83539	22.363	2	0	Median	1.4194	1.3544	17.321	2	0	Median	NaN	NaN	NaN	0	0	Median	11464000	5705500	5758900	0	0	0	7391300	4031300	3360000	4073000	1674100	2398900	0	0	0	57315	4115	53988	348646;348647;348648;348649;348650	470392;470393;470394	470392	3045		3	
VVQSLEQTAR	0	Unmodified	1129.6091	0.60913632	2688	Q15631	TSN	Translin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	5.88	4	4			3	4	4	4	4	6	7	7	7	23.311	16.896	2	1.5337E-24	11424	160513_QHF_FH_JSI12Kac_3	180.44	111.52			1.1379	1.1028	18.527	27	4	Median	1.2042	1.0549	14.661	6	2	Median	0.84506	1.0116	14.659	7	0	Median	1.2253	1.2169	18.302	7	1	Median	1.0976	1.1901	19.509	7	1	Median	6507900000	3245300000	3262600000	2254900000	1061900000	1192900000	1541500000	907060000	634400000	1294000000	599200000	694810000	1417600000	677080000	740480000	57316	2688	53989	348651;348652;348653;348654;348655;348656;348657;348658;348659;348660;348661;348662;348663;348664;348665;348666;348667;348668;348669;348670;348671;348672;348673;348674;348675;348676;348677	470395;470396;470397;470398;470399;470400;470401;470402;470403;470404;470405;470406;470407;470408;470409;470410;470411;470412;470413;470414;470415;470416;470417;470418;470419;470420;470421;470422;470423;470424;470425;470426;470427;470428;470429;470430;470431;470432;470433	470420			39	
VVQTDETAR	0	Unmodified	1017.5091	0.50908792	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	8.0013	7.652	2	0.00088814	5414	160511_QHF_FH_JSI10i_1	72.23	50.93			1.0836	1.09	26.501	4	2	Median	1.7932	1.46	NaN	1	0	Median	0.66097	0.76493	NaN	1	0	Median	1.0919	1.0684	NaN	1	1	Median	1.0754	1.112	NaN	1	1	Median	392840000	203360000	189480000	134530000	60928000	73602000	99915000	61683000	38232000	84164000	43831000	40333000	74230000	36917000	37312000	57317	5	53990	348678;348679;348680;348681;348682	470434;470435;470436;470437;470438	470437			5	
VVQTKYVEAK	2	Acetyl (K)	1205.6656	0.66558856	4274	Q99471	PFDN5	Prefoldin subunit 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				2	1	1	37.897	28.891	2	0.00034863	16886	160513_QHF_FH_JSI11Kac_3	93.111	77.96			0.35191	0.34435	69.081	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1558	1.3669	NaN	1	0	Median	0.35191	0.34435	NaN	1	0	Median	0.68341	0.74189	NaN	1	0	Median	16472000	11633000	4839100	0	0	0	4842600	3083200	1759400	7716500	5868300	1848200	3912800	2681300	1231500	57318	4274	53991	348683;348684;348685;348686	470439;470440;470441;470442;470443;470444	470441	3098		6	
VVQVFSEYFK	1	Unmodified	1244.6441	0.64412484	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.21		6	1					1	2	3	3	1	3	75.854	72.315	2	5.5935E-05	64842	160511_QHF_FH_JSI9i_2	102.61	90.761			0.95489	1.08	32.109	10	7	Median	0.77247	0.65144	31.74	3	2	Plateau	0.94472	1.1185	38.232	3	2	Median	0.9512	0.96223	NaN	1	0	Median	1.0886	1.1694	29.527	3	3	Median	798440000	406780000	391660000	150110000	84349000	65756000	229950000	116800000	113150000	175430000	100060000	75364000	242960000	105560000	137400000	57319	4524	53992	348687;348688;348689;348690;348691;348692;348693;348694;348695;348696	470445;470446;470447;470448;470449;470450;470451;470452;470453;470454;470455	470448			11	
VVQVSAGDSHTAALTDDGR	0	Unmodified	1897.913	0.91298249	1145	P18754	RCC1	Regulator of chromosome condensation	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.624	5	6	1							1	2	5	4	33.765	33.168	2;3	2.2729E-18	28316	160511_QHF_FH_JSI11i_2	136.04	125.7			1.1447	1.163	13.977	9	3	Median	1.5682	1.3463	NaN	1	0	Median	0.83448	0.99943	14.749	2	0	Median	1.1366	1.1219	10.556	4	3	Median	1.1789	1.2781	6.3736	2	0	Median	1015600000	495080000	520550000	86033000	28666000	57367000	107310000	54372000	52938000	474090000	226840000	247250000	348200000	185200000	163000000	57320	1145	53993	348697;348698;348699;348700;348701;348702;348703;348704;348705;348706;348707;348708	470456;470457;470458;470459;470460;470461;470462;470463;470464;470465;470466;470467;470468;470469;470470;470471;470472	470468			17	
VVQVYRK	1	Unmodified	890.53379	0.53378653	1949;5450	P61254;Q2PPJ7;Q9UNX3	RPL26;RALGAPA2;RPL26L1	60S ribosomal protein L26;Ral GTPase-activating protein subunit alpha-2;60S ribosomal protein L26-like 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.38			6					1	4	4	3	3	1	12.93	9.0425	2;3	0.0030602	5716	160513_QHF_FH_JSI10Kac_6	74.335	45.823			1.1952	0.95869	19.186	11	1	Median	1.2727	1.0399	10.172	4	0	Median	0.7264	0.82777	7.2929	3	0	Plateau	1.2145	1.1686	36.597	3	1	Median	0.86349	0.95016	NaN	1	0	Median	2736800000	1398600000	1338200000	1293400000	565400000	727970000	945640000	546510000	399130000	484250000	279300000	204950000	13545000	7379000	6166400	57321	1949;5450	53994	348709;348710;348711;348712;348713;348714;348715;348716;348717;348718;348719	470473;470474;470475;470476;470477;470478;470479;470480;470481	470481			9	
VVRPDSELGERPPEDNQSFQYDHEAFLGK	1	Unmodified	3358.5854	0.58544735	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS		2.78	0.416		2	7							2	5	2		62.046	61.004	4;5	2.269E-27	53625	160511_QHF_FH_JSI11i_3	134.69	128.79			0.90811	0.83828	23.507	9	1	Median	1.2334	1.0092	36.626	2	0	Median	0.70202	0.83828	25.451	5	1	Median	0.88201	0.81617	6.1138	2	0	Median	NaN	NaN	NaN	0	0	Median	941430000	490070000	451360000	117580000	65269000	52308000	400100000	219060000	181040000	423750000	205740000	218010000	0	0	0	57322	2652	53995	348720;348721;348722;348723;348724;348725;348726;348727;348728	470482;470483;470484;470485;470486;470487;470488;470489;470490;470491;470492;470493;470494	470483			13	
VVRPQGAEPVK	1	Unmodified	1178.6772	0.6771563	2278	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				13.865	12.972	3	0.032938	10115	160511_QHF_FH_JSI9i_3	30.004	21.491			1.0325	0.85158	NaN	1	0	Median	1.0325	0.85158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	68153000	34508000	33646000	68153000	34508000	33646000	0	0	0	0	0	0	0	0	0	57323	2278	53996	348729	470495	470495			1	
VVRYEGFFSLWK	1	Unmodified	1529.8031	0.8030851	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			83.514	76.408	3	1.6717E-06	42923	160513_QHF_FH_JSI10Kac_6	103.85	75.884			1.5159	1.5144	1.1631	2	1	Median	1.7541	1.5269	NaN	1	1	Median	1.3101	1.502	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118130000	53016000	65112000	35128000	12616000	22512000	83001000	40400000	42601000	0	0	0	0	0	0	57324	2198	53997	348730;348731	470496;470497	470497			2	
VVSAAVQAQHSATK	1	Unmodified	1395.747	0.74702678	4678	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.07	4.99		5	7					3		4	3	5	3	13.965	11.851	2;3	4.2574E-06	9797	160511_QHF_FH_JSI11i_3	134.56	120.79			1.1648	1.1713	70.232	14	14	Median	0.92308	0.77846	76.792	4	4	Median	0.69345	0.85355	33.863	3	3	Plateau	2.1313	2.0852	94.391	5	5	Median	0.90754	0.91123	83.117	2	2	Median	773150000	361560000	411580000	128060000	56015000	72042000	197310000	103640000	93673000	245990000	108610000	137380000	201790000	93303000	108490000	57325	4678	53998	348732;348733;348734;348735;348736;348737;348738;348739;348740;348741;348742;348743;348744;348745;348746	470498;470499;470500;470501;470502;470503;470504;470505;470506;470507;470508;470509;470510;470511;470512	470498			15	
VVSAFLK	1	Unmodified	762.46398	0.46397563	1578	P46060	RANGAP1	Ran GTPase-activating protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	1	2	39.748	38.835	2	0.032748	31860	160511_QHF_FH_JSI9i_3	50.966	17.608			1.0659	1.0165	27.086	5	1	Median	1.2522	1.0165	NaN	1	0	Median	0.56098	0.63658	NaN	1	1	Median	1.0659	1.0392	NaN	1	0	Median	1.0762	1.1273	25.293	2	0	Median	1805500000	926100000	879440000	185630000	77372000	108260000	162620000	87144000	75476000	522110000	266860000	255260000	935170000	494730000	440450000	57326	1578	53999	348747;348748;348749;348750;348751	470513;470514;470515;470516;470517;470518;470519	470518			7	
VVSATHQVFLPAYAAWTTELGNLQSHLILTLLNK	1	Unmodified	3748.0352	0.035216885	5201	Q9P260	KIAA1468	LisH domain and HEAT repeat-containing protein KIAA1468	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									5	3	1	1		99.418	90.897	4;5	4.3158E-80	52034	160513_QHF_FH_JSI9Kac_6	233.86	227.37			0.86298	0.75076	33.399	4	3	Median	0.84111	0.73279	18.192	3	2	Median	1.0253	1.2306	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1176400000	533510000	642880000	639570000	353260000	286310000	495790000	156730000	339060000	41029000	23523000	17506000	0	0	0	57327	5201	54000	348752;348753;348754;348755;348756	470520;470521;470522;470523	470520			3	
VVSDREEPEAAYR	0	Unmodified	1519.7267	0.72668527	3146	Q6UVK1	CSPG4	Chondroitin sulfate proteoglycan 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		18.009	18.009	3	0.0038651	15021	160511_QHF_FH_JSI11i_3	46.206	35.853			0.87372	0.84407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87372	0.84407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	174120000	99144000	74977000	0	0	0	0	0	0	174120000	99144000	74977000	0	0	0	57328	3146	54001	348757	470524	470524			1	
VVSEDFLQDVSASTK	1	Unmodified	1623.7992	0.79918151	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.35	2.99	8	6	2				1			4	6	3	4	71.386	70.011	2;3	5.6591E-31	64155	160511_QHF_FH_JSI12i_1	234.92	219.29			0.94691	1.0033	11.398	17	5	Median	1.1645	0.98117	2.9435	4	1	Median	0.93879	1.1309	7.0758	6	1	Median	0.93174	0.8881	8.6905	3	1	Plateau	0.8406	0.90657	4.0122	4	2	Median	4456300000	2238400000	2217900000	922790000	394380000	528420000	1083400000	592340000	491070000	1264900000	554130000	710760000	1185200000	697570000	487620000	57329	939	54002	348758;348759;348760;348761;348762;348763;348764;348765;348766;348767;348768;348769;348770;348771;348772;348773;348774	470525;470526;470527;470528;470529;470530;470531;470532;470533;470534;470535;470536;470537;470538;470539;470540;470541;470542;470543;470544;470545;470546;470547;470548;470549;470550;470551;470552;470553;470554;470555;470556;470557	470535			33	
VVSEIPVLK	1	Unmodified	982.60628	0.60628277	5583	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	2	1	56.178	55.357	2	0.0030296	47874	160511_QHF_FH_JSI11i_2	62.107	52.121			1.0833	1.0904	49.366	7	0	Median	2.5079	2.0822	87.748	2	0	Median	0.8685	1.0407	17.253	2	0	Median	1.1025	1.0896	0.093565	2	0	Median	0.90827	1.0201	NaN	1	0	Median	752710000	338160000	414550000	133910000	46236000	87679000	247300000	119290000	128010000	261070000	117910000	143160000	110430000	54726000	55703000	57330	5583	54003	348775;348776;348777;348778;348779;348780;348781	470558;470559;470560;470561;470562;470563;470564	470564			7	
VVSETNDTK	1	Unmodified	991.4822	0.48220447	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.79	5.33	4	4	2	2	3	3	1			5	4	5	5	6.0255	2.5369	2	6.2368E-08	3354	160511_QHF_FH_JSI11i_1	141.48	114.88			0.96034	0.90357	17.932	18	1	Median	1.1082	0.92071	1.3808	4	1	Median	0.6336	0.75791	13.834	4	0	Median	0.92906	0.89264	13.34	5	0	Median	0.99267	1.098	26.006	5	0	Median	30072000000	16075000000	13997000000	5288600000	2707500000	2581100000	7571700000	4207400000	3364300000	7990200000	4059800000	3930400000	9221600000	5100600000	4121000000	57331	842	54004	348782;348783;348784;348785;348786;348787;348788;348789;348790;348791;348792;348793;348794;348795;348796;348797;348798;348799;348800	470565;470566;470567;470568;470569;470570;470571;470572;470573;470574;470575;470576;470577;470578;470579;470580;470581;470582;470583;470584;470585;470586;470587;470588;470589;470590;470591;470592;470593	470567			29	
VVSETNDTKVLR	1	Acetyl (K)	1401.7464	0.74635808	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.433						1	3				1	2	1	42.682	32.848	2	0.0026841	19173	160513_QHF_FH_JSI11Kac_3	75.509	48.62			0.32236	0.32941	186.68	4	1	Median	NaN	NaN	NaN	0	0	Median	0.89328	1.091	NaN	1	0	Median	0.056978	0.05574	183.15	2	1	Median	0.49323	0.53319	NaN	1	0	Median	81294000	66657000	14637000	0	0	0	8795900	4612000	4183900	65196000	57443000	7753200	7301100	4601700	2699400	57332	842	54005	348801;348802;348803;348804	470594;470595;470596;470597	470595	499		4	
VVSETNDTKVLRH	1	Acetyl (K)	1538.8053	0.80526994	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.75							5	4	2	1	3	3	4	35.889	26.407	2;3	4.0524E-20	14090	160513_QHF_FH_JSI10Kac_5	157.56	145.64			0.6436	0.70744	76.029	9	1	Median	0.88534	0.76653	NaN	1	0	Median	1.1905	1.4274	11.379	2	0	Median	0.24152	0.23713	35.814	3	1	Median	0.6436	0.70744	5.2184	3	0	Median	402170000	284120000	118050000	11881000	6641600	5239100	108680000	54040000	54640000	217710000	190060000	27656000	63896000	33378000	30518000	57333	842	54006	348805;348806;348807;348808;348809;348810;348811;348812;348813;348814;348815	470598;470599;470600;470601;470602;470603;470604;470605;470606;470607;470608;470609;470610;470611;470612;470613	470613	499		16	
VVSGIASKPK	2	Unmodified	984.59678	0.59678072	2667	Q15398	DLGAP5	Disks large-associated protein 5	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				12.23	11.433	3	0.05117	8834	160511_QHF_FH_JSI9i_3	30.55	22.904			3.3988	2.8017	NaN	1	1	Median	3.3988	2.8017	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27851000	9231500	18619000	27851000	9231500	18619000	0	0	0	0	0	0	0	0	0	57334	2667	54007	348816	470614	470614			1	
VVSHLIEK	1	Unmodified	923.54402	0.54401687	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		17.065	17.065	2	0.02187	14214	160511_QHF_FH_JSI11i_3	55.37	10.975			1.4062	1.3665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4062	1.3665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	63326000	29102000	34224000	0	0	0	0	0	0	63326000	29102000	34224000	0	0	0	57335	5608	54008	348817	470615	470615			1	
VVSHSGSAGLSQVR	0	Unmodified	1382.7266	0.72662569	3107	Q6P4R8	NFRKB	Nuclear factor related to kappa-B-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			15.352	14.359	3	0.0031184	11491	160511_QHF_FH_JSI10i_3	45.33	36.63			1.2996	1.2804	9.9844	2	0	Median	1.6424	1.374	NaN	1	0	Median	1.0283	1.1931	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27522000	11915000	15607000	14466000	6206400	8259300	13057000	5708900	7347800	0	0	0	0	0	0	57336	3107	54009	348818;348819	470616;470617;470618	470616			3	
VVSILGVESQAVSLAACHLLQVMFDALK	1	Unmodified	2997.6031	0.60313501	4704	Q9H3U1	UNC45A	Protein unc-45 homolog A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.5	98.783	3	4.78E-84	58457	160513_QHF_FH_JSI10Kac_6	205.89	193.93			0.8128	0.97245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8128	0.97245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	139670000	86208000	53459000	0	0	0	139670000	86208000	53459000	0	0	0	0	0	0	57337	4704	54010	348820	470619	470619			1	
VVSISSEHLEPITPTK	1	Unmodified	1735.9356	0.93561541	116	O00267	SUPT5H	Transcription elongation factor SPT5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.29	1	4	2					1		2	1	3	2	55.216	53.145	3	1.0959E-05	45415	160511_QHF_FH_JSI12i_2	95.662	77.249			0.92877	0.90573	14.917	8	3	Median	1.0927	0.90944	7.314	2	1	Median	0.7367	0.91311	NaN	1	1	Median	0.99241	0.95991	13.006	3	0	Median	0.69189	0.76047	23.573	2	1	Median	832490000	439960000	392530000	163820000	73699000	90119000	178900000	102810000	76091000	315750000	152910000	162840000	174030000	110540000	63484000	57338	116	54011	348821;348822;348823;348824;348825;348826;348827;348828	470620;470621;470622;470623;470624;470625;470626;470627;470628;470629	470622			10	
VVSIYGSSIDVELQQR	0	Unmodified	1791.9367	0.93667805	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.999	72.723	2	7.4418E-06	62789	160511_QHF_FH_JSI12i_2	118.48	86.475			0.72521	0.75142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72521	0.75142	NaN	1	1	Median	5812300	3918400	1893900	0	0	0	0	0	0	0	0	0	5812300	3918400	1893900	57339	369	54012	348829	470630	470630			1	
VVSLLDLTEYEMR	0	Unmodified	1566.7963	0.79634474	5270	Q9UDY8	MALT1	Mucosa-associated lymphoid tissue lymphoma translocation protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	99.486	99.316	2	0.00019792	87020	160511_QHF_FH_JSI9i_2	80.763	73.635			0.7753	0.91166	32.984	5	2	Median	1.0375	0.91166	NaN	1	0	Median	0.7753	0.99697	NaN	1	0	Median	0.77436	0.77978	NaN	1	0	Median	1.0972	1.2021	54.506	2	2	Median	78262000	41032000	37229000	12782000	6461000	6321100	12608000	8464900	4142700	24943000	10255000	14688000	27929000	15851000	12078000	57340	5270	54013	348830;348831;348832;348833;348834	470631;470632;470633;470634;470635;470636	470633			5	
VVSLLLSHLPLLQPGNTEAK	1	Unmodified	2128.2256	0.22558985	2913	Q5PRF9	SAMD4B	Protein Smaug homolog 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		90.688	81.339	3	3.0494E-05	45583	160513_QHF_FH_JSI11Kac_6	76.301	59.421			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57341	2913	54014	348835	470637	470637			1	
VVSLQLLLSVLQNAGPVFR	0	Unmodified	2052.2095	0.20954585	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									5	2	3			101.32	94.219	2;3	6.1759E-122	56396	160513_QHF_FH_JSI10Kac_6	297.16	265.97			1.0885	1.0148	24.143	5	2	Median	1.0221	0.86521	11.243	2	0	Median	1.0885	1.2495	18.766	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	654860000	343510000	311360000	252190000	147470000	104720000	402670000	196030000	206640000	0	0	0	0	0	0	57342	5718	54015	348836;348837;348838;348839;348840	470638;470639;470640;470641;470642;470643	470642			6	
VVSNFMDFDETGVLK	1	Unmodified	1699.8127	0.81272309	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	2	4	1	87.234	86.842	2	0.00049984	76319	160511_QHF_FH_JSI11i_2	90.614	66.864			1.1286	1.2748	7.5644	3	3	Median	NaN	NaN	NaN	0	0	Median	1.1236	1.2748	NaN	1	1	Median	1.327	1.2783	NaN	1	1	Median	1.1286	1.1198	NaN	1	1	Median	46464000	20008000	26456000	0	0	0	17757000	7836100	9920600	14670000	4976100	9694300	14036000	7195600	6840900	57343	4637	54016	348841;348842;348843;348844;348845;348846;348847;348848	470644;470645;470646;470647;470648;470649;470650;470651	470650			8	
VVSPALR	0	Unmodified	740.45447	0.45447358	1767;254	O15131;P52294	KPNA5;KPNA1	Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	no	no	0	0	0	0		By MS/MS			3	0			1								1			20.977	19.794	2	0.026947	16210	160511_QHF_FH_JSI10i_3	46.663	11.958			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57344	254;1767	54017	348849	470652	470652			1	
VVSPGIDLSGLTLQSNAPSSMMVK	1	Unmodified	2430.2498	0.24983204	2423	Q13485	SMAD4	Mothers against decapentaplegic homolog 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	98.779	98.67	3	1.0202E-08	89293	160511_QHF_FH_JSI10i_1	72.316	57.388			0.75289	0.84838	12.716	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.75289	0.84838	NaN	1	0	Median	0.68835	0.66578	NaN	1	1	Median	0.81099	0.80343	NaN	1	0	Median	59669000	34592000	25077000	0	0	0	33903000	19350000	14552000	12728000	8024300	4703700	13038000	7216900	5821300	57345	2423	54018	348850;348851;348852	470653;470654;470655	470655			3	
VVSPIIDVINMDNFQYVGASADLK	1	Unmodified	2607.3254	0.32543982	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	101.97	101.82	3	7.051E-13	89626	160511_QHF_FH_JSI11i_2	102.07	94.794			1.0995	1.1645	5.4821	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2027	1.2105	NaN	1	0	Median	1.0052	1.1202	NaN	1	1	Median	379700000	158880000	220820000	0	0	0	0	0	0	234700000	95619000	139080000	145000000	63257000	81742000	57346	2294	54019	348853;348854	470656;470657	470657			2	
VVSPPEPEK	1	Unmodified	980.51786	0.51786169	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	21.47	20.632	2	0.0092336	17568	160511_QHF_FH_JSI9i_1	60.436	46.44			0.88524	0.81475	19.051	2	2	Median	1.1261	0.93224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69589	0.71207	NaN	1	1	Median	126500000	69185000	57316000	57875000	22550000	35324000	0	0	0	0	0	0	68627000	46635000	21992000	57347	3499	54020	348855;348856	470658;470659	470659			2	
VVSPWNSEDAK	1	Unmodified	1230.5881	0.58806652	990	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			2	1	2	3	36.881	34.968	2	6.4424E-05	29762	160511_QHF_FH_JSI11i_2	93.111	52.842			1.1228	1.1818	8.2863	8	2	Median	1.3241	1.1173	10.645	2	1	Median	0.97586	1.1594	NaN	1	0	Median	1.207	1.1897	13.806	2	0	Median	1.1422	1.2113	8.0697	3	1	Plateau	1102200000	464850000	637390000	306280000	132330000	173940000	175710000	65987000	109720000	259240000	102040000	157190000	361020000	164490000	196540000	57348	990	54021	348857;348858;348859;348860;348861;348862;348863;348864	470660;470661;470662;470663;470664;470665;470666;470667	470665			8	
VVSQSLQHYLELGR	0	Unmodified	1627.8682	0.86820455	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							3	3	1	1	65.531	64.598	2;3	0.00034861	57224	160511_QHF_FH_JSI11i_3	62.861	50.942			0.82453	0.87598	18.964	7	2	Median	1.3231	1.0922	31.203	2	1	Median	0.75119	0.85923	8.5861	3	1	Plateau	1.0023	0.96647	NaN	1	0	Median	0.82453	0.82203	NaN	1	0	Median	298050000	157310000	140740000	86883000	39998000	46885000	92993000	57739000	35254000	64428000	30001000	34427000	53745000	29574000	24170000	57349	647	54022	348865;348866;348867;348868;348869;348870;348871;348872	470668;470669;470670;470671;470672;470673;470674;470675	470668			8	
VVSQYHELVVQAR	0	Unmodified	1526.8205	0.82052608	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.7		6	5						8	3	4	6	6	40.721	36.439	2;3	3.1143E-53	30980	160511_QHF_FH_JSI12i_3	239.02	218.15			0.95731	0.99024	13.869	19	2	Median	1.2285	1.0735	17.082	3	0	Median	1.0093	1.1645	7.2624	4	0	Median	1.0041	0.96643	10.363	6	0	Median	0.9233	0.94076	13.622	6	2	Median	3701500000	1778700000	1922800000	360320000	132990000	227330000	450950000	218410000	232540000	1606100000	776990000	829130000	1284100000	650330000	633770000	57350	2780	54023	348873;348874;348875;348876;348877;348878;348879;348880;348881;348882;348883;348884;348885;348886;348887;348888;348889;348890;348891	470676;470677;470678;470679;470680;470681;470682;470683;470684;470685;470686;470687;470688;470689;470690;470691;470692;470693;470694;470695;470696;470697;470698;470699;470700;470701;470702;470703;470704;470705	470699			29	
VVSQYSSLLSPMSVNAVMK	1	Unmodified	2039.0431	0.043133728	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.95	0.785	7	8	6							4	5	6	6	91.957	91.54	2;3	2.9741E-24	82976	160511_QHF_FH_JSI10i_1	211.13	185			1.0218	1.0423	16.934	21	2	Median	1.1121	0.94714	7.4625	4	0	Median	0.87552	1.0423	8.7685	5	0	Median	0.994	1.0097	13.565	6	0	Median	1.1396	1.211	21.548	6	2	Median	3504300000	1657100000	1847300000	515820000	247720000	268100000	870420000	445600000	424820000	1242900000	573590000	669320000	875180000	390140000	485040000	57351	1722	54024	348892;348893;348894;348895;348896;348897;348898;348899;348900;348901;348902;348903;348904;348905;348906;348907;348908;348909;348910;348911;348912	470706;470707;470708;470709;470710;470711;470712;470713;470714;470715;470716;470717;470718;470719;470720;470721;470722;470723;470724;470725;470726;470727;470728;470729;470730;470731;470732;470733;470734;470735;470736;470737;470738;470739;470740;470741;470742;470743;470744;470745;470746;470747;470748;470749;470750;470751;470752;470753;470754;470755	470730			50	
VVSQYSSLLSPMSVNAVMK	1	Oxidation (M)	2055.038	0.03804835	1722	P50991	CCT4	T-complex protein 1 subunit delta	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	80.107	79.602	3	8.0732E-05	69076	160511_QHF_FH_JSI12i_3	59.182	50.25			1.2305	1.3153	24.641	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4132	1.381	25.886	2	1	Median	1.12	1.207	31.148	2	1	Median	216650000	80977000	135670000	0	0	0	0	0	0	105360000	44573000	60785000	111290000	36404000	74889000	57352	1722	54024	348913;348914;348915;348916	470756;470757;470758;470759;470760	470759		1410	5	
VVSSGAPHAILLK	1	Unmodified	1290.766	0.76597131	3073	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							2	2	2	1	40.471	39.654	3	1.3026E-05	34754	160511_QHF_FH_JSI11i_3	90.731	82.321			0.85845	0.79489	37.791	7	4	Median	0.70613	0.59053	50.22	2	1	Median	0.8234	0.98079	41.683	2	2	Median	0.81924	0.79218	0.48344	2	1	Median	1.1595	1.2062	NaN	1	0	Median	1341400000	730600000	610790000	164620000	92462000	72163000	207870000	113530000	94340000	448410000	244720000	203680000	520500000	279890000	240610000	57353	3073	54025	348917;348918;348919;348920;348921;348922;348923	470761;470762;470763;470764;470765;470766;470767;470768;470769;470770	470762			10	
VVSSIEQK	1	Unmodified	888.49165	0.49164694	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.39	8	4	3			3	3			5	5	6	5	14.03	11.097	2	5.7046E-23	7239	160513_QHF_FH_JSI10Kac_3	190.08	70.518			1.0285	1.1	79.746	21	17	Median	1.4502	1.3311	81.326	5	4	Median	0.56701	0.66226	79.508	5	4	Median	0.73075	0.73698	85.366	6	6	Median	1.0204	1.1	82.691	5	3	Median	61904000000	33179000000	28726000000	15226000000	6691300000	8534800000	13546000000	7823700000	5722600000	17531000000	9901700000	7629500000	15601000000	8761900000	6838700000	57354	2051	54026	348924;348925;348926;348927;348928;348929;348930;348931;348932;348933;348934;348935;348936;348937;348938;348939;348940;348941;348942;348943;348944	470771;470772;470773;470774;470775;470776;470777;470778;470779;470780;470781;470782;470783;470784;470785;470786;470787;470788;470789;470790;470791;470792;470793	470791			23	
VVSSIEQKTEGAEK	2	Acetyl (K)	1545.7886	0.78861683	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						4					1	1	2	45.615	36.542	2	6.5286E-06	20182	160513_QHF_FH_JSI12Kac_3	104.79	97.415			0.46519	0.45034	38.48	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.70855	0.83497	NaN	1	0	Median	0.42443	0.40383	NaN	1	0	Median	0.66626	0.72367	NaN	1	0	Median	14095000	6730700	7364200	0	0	0	3440400	1835600	1604800	4721500	2685400	2036100	5933000	2209700	3723300	57355	2051	54027	348945;348946;348947;348948	470794;470795;470796;470797;470798	470795	2117		5	
VVSSSIVDK	1	Unmodified	932.51786	0.51786169	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	5.43	3	3					2			1	2	3	2	24.985	22.233	2	0.00065183	19079	160511_QHF_FH_JSI9i_2	76.679	59.293			1.0722	1.0524	42.869	8	2	Median	1.0679	0.92454	NaN	1	0	Median	0.72141	0.85041	43.16	2	1	Median	1.1045	1.0624	56.569	3	1	Median	0.91843	0.99565	19.7	2	0	Median	2199100000	1000300000	1198700000	106590000	42778000	63809000	532480000	224780000	307700000	699630000	309580000	390050000	860370000	423210000	437160000	57356	2006	54028	348949;348950;348951;348952;348953;348954;348955;348956	470799;470800;470801;470802;470803;470804;470805;470806;470807;470808	470806			10	
VVSSSIVDKYIGESAR	1	Acetyl (K)	1750.9101	0.91012895	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	78.796	68.306	2	9.6517E-07	36244	160513_QHF_FH_JSI11Kac_5	112.43	88.138			0.84399	0.92515	15.783	3	0	Median	NaN	NaN	NaN	0	0	Median	0.88579	1.0058	NaN	1	0	Median	0.75464	0.74108	NaN	1	0	Median	0.84399	0.92515	NaN	1	0	Median	17258000	10517000	6740300	0	0	0	2179300	1328200	851120	13953000	8500500	5452600	1125100	688520	436610	57357	2006	54029	348957;348958;348959	470809;470810;470811	470810	2035		3	
VVSSVLQFGNISFK	1	Unmodified	1523.8348	0.83477916	1437	P35580	MYH10	Myosin-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	90.323	89.716	2	1.1348E-06	78041	160511_QHF_FH_JSI12i_3	155.99	143.03			0.41551	0.38229	152.82	2	1	Median	0.15887	0.12974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0867	1.1264	NaN	1	0	Median	42781000	28163000	14618000	17805000	14264000	3541200	0	0	0	0	0	0	24976000	13899000	11077000	57358	1437	54030	348960;348961;348962	470812;470813;470814;470815	470815			4	
VVSTPPSVTEPPEK	1	Unmodified	1465.7664	0.76642482	3869	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				37.815	36.592	2	0.0065502	32264	160511_QHF_FH_JSI9i_1	61.344	50.179			1.1833	0.97267	NaN	1	1	Median	1.1833	0.97267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22129000	9325000	12804000	22129000	9325000	12804000	0	0	0	0	0	0	0	0	0	57359	3869	54031	348963	470816	470816			1	
VVSVLHHLSIK	1	Unmodified	1230.7448	0.74484194	3353	Q86W92	PPFIBP1	Liprin-beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.11	6.35			17						11	8	7	6	7	46.458	42.428	2;3;4	1.1994E-06	35794	160511_QHF_FH_JSI12i_3	124.1	111.89			0.81076	0.65952	95.667	25	22	Median	0.90618	0.75612	108.29	8	5	Median	0.68881	0.79757	104.5	4	4	Median	0.77392	0.73081	90.101	6	6	Median	0.39921	0.4329	99.499	7	7	Median	1254500000	646400000	608060000	366550000	157210000	209340000	198300000	115760000	82544000	285300000	152820000	132480000	404320000	220620000	183700000	57360	3353	54032	348964;348965;348966;348967;348968;348969;348970;348971;348972;348973;348974;348975;348976;348977;348978;348979;348980;348981;348982;348983;348984;348985;348986;348987;348988;348989;348990;348991	470817;470818;470819;470820;470821;470822;470823;470824;470825;470826;470827;470828;470829;470830;470831;470832;470833;470834;470835;470836;470837;470838;470839;470840;470841;470842;470843;470844;470845	470837			29	
VVTAAAQAK	1	Unmodified	857.49707	0.49706667	2409	Q13428	TCOF1	Treacle protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.5	5.5	2	1					1				1	1	2	9.5752	7.3649	2	4.6266E-05	6511	160511_QHF_FH_JSI12i_1	98.458	59.24			1.0597	1.1369	26.347	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1413	1.3495	NaN	1	1	Median	0.98399	0.95785	NaN	1	0	Median	0.98312	1.0563	37.959	2	0	Median	1008700000	559610000	449120000	0	0	0	500340000	278850000	221490000	10546000	5623400	4922700	497850000	275140000	222710000	57361	2409	54033	348992;348993;348994;348995	470846;470847;470848;470849	470847			4	
VVTATLWGEDADK	1	Unmodified	1403.6933	0.69325988	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	55.602	55.074	2	4.3991E-06	50058	160511_QHF_FH_JSI12i_1	124.42	106.6			6.7327	7.3738	170.16	2	2	Median	NaN	NaN	NaN	0	0	Median	20.906	24.561	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1682	2.2138	NaN	1	1	Median	1654800000	117720000	1537100000	0	0	0	1586800000	91346000	1495500000	0	0	0	67996000	26379000	41617000	57362	1293	54034	348996;348997	470850;470851	470850			2	
VVTATLWGEDADKFDGSR	1	Unmodified	1965.9432	0.94321999	1293	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	64.711	64.421	3	0.00019754	55618	160511_QHF_FH_JSI12i_3	69.737	59.68			0.85586	0.98643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85586	0.98643	NaN	1	0	Median	73093000	44544000	28550000	0	0	0	0	0	0	0	0	0	73093000	44544000	28550000	57363	1293	54035	348998	470852	470852			1	
VVTDLISLIR	0	Unmodified	1127.6914	0.69140938	1475	P38432	COIL	Coilin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	90.159	89.581	2	0.0024135	77399	160511_QHF_FH_JSI12i_2	60.019	30.643			1.0969	1.1596	7.7442	4	0	Median	1.412	1.1864	NaN	1	0	Median	0.82436	1.01	NaN	1	0	Median	1.1368	1.1335	NaN	1	0	Median	1.0585	1.1938	NaN	1	0	Median	111320000	52998000	58321000	22643000	10870000	11773000	27321000	14357000	12964000	31659000	12614000	19045000	29696000	15156000	14540000	57364	1475	54036	348999;349000;349001;349002	470853;470854;470855;470856;470857	470853			5	
VVTDTDETELAR	0	Unmodified	1347.6518	0.65178899	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6	4					4				2	2	2	2	31.281	25.461	2	3.4109E-24	5894	160513_QHF_FH_JSI9Kac_3	169.37	157.14			0.97679	0.98194	7.2834	8	0	Median	1.1655	0.94431	6.9588	2	0	Median	0.90001	1.0556	11.668	2	0	Median	1.014	0.98752	4.6327	2	0	Median	0.88802	0.9621	4.7683	2	0	Median	5150500000	2601500000	2549000000	1315300000	636480000	678770000	1342400000	739560000	602820000	1040600000	459380000	581190000	1452300000	766080000	686200000	57365	832	54037	349003;349004;349005;349006;349007;349008;349009;349010	470858;470859;470860;470861;470862;470863;470864;470865;470866;470867;470868;470869	470865			12	
VVTGVANALAHR	0	Unmodified	1206.6833	0.68330431	72	CON__Q3SX09			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	8.78	6.46			5						4	3	3	2	1	37.169	32.46	2;3	9.8958E-07	27063	160511_QHF_FH_JSI10i_3	122.86	109.43		+	0.7865	0.85144	29.594	9	0	Median	0.76688	0.61524	23.182	3	0	Median	0.7865	0.91897	28.549	3	0	Plateau	1.0583	1.0065	7.9816	2	0	Median	1.1264	1.2293	NaN	1	0	Median	712780000	395680000	317100000	285880000	150060000	135820000	306560000	187550000	119010000	112590000	54756000	57834000	7737900	3307300	4430600	57366	72	54038	349011;349012;349013;349014;349015;349016;349017;349018;349019	470870;470871;470872;470873;470874;470875;470876;470877;470878;470879	470872			10	
VVTLLSDPENIVK	1	Unmodified	1425.8079	0.80789571	4286	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	76.898	76.361	2	0.0067223	69571	160511_QHF_FH_JSI12i_1	60.547	45.282			1.0315	1.0367	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0315	1.0367	NaN	1	1	Median	17372000	9064200	8308300	0	0	0	0	0	0	0	0	0	17372000	9064200	8308300	57367	4286	54039	349020	470880	470880			1	
VVTLLYDLVTEK	1	Unmodified	1391.7912	0.79118301	4651	Q9H173	SIL1	Nucleotide exchange factor SIL1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	1	3	99.974	99.864	2	8.7202E-05	88415	160511_QHF_FH_JSI10i_2	104.82	94.066			0.90769	0.89985	91.457	7	7	Median	1.7413	1.493	95.532	2	2	Median	1.6562	2.0003	142.67	2	2	Median	0.90769	0.89985	NaN	1	1	Median	1.7834	1.912	125.2	2	2	Median	239930000	93369000	146560000	48539000	19814000	28725000	65459000	27113000	38346000	46586000	22889000	23697000	79344000	23553000	55791000	57368	4651	54040	349021;349022;349023;349024;349025;349026;349027;349028	470881;470882;470883;470884;470885;470886;470887;470888	470887			8	
VVTLQGQIIEQSGTMTGGGSK	1	Unmodified	2090.0678	0.067768574	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	63.061	62.431	3	1.8142E-07	56944	160511_QHF_FH_JSI12i_1	85.518	57.306			0.80932	0.80688	7.2081	3	3	Plateau	0.98676	0.80496	NaN	1	1	Median	0.68993	0.80688	NaN	1	1	Median	0.94936	0.91308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	184060000	103370000	80698000	34599000	18745000	15854000	87796000	52040000	35756000	61669000	32581000	29088000	0	0	0	57369	4989	54041	349029;349030;349031;349032;349033	470889;470890;470891;470892;470893	470890			5	
VVTPLHINLSGQK	1	Unmodified	1404.8089	0.80889876	3722	Q8TDM6	DLG5	Disks large homolog 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	53.956	53.837	3	0.0015317	46148	160511_QHF_FH_JSI12i_3	52.5	43.306			0.63923	0.62931	11.67	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64039	0.57946	NaN	1	0	Median	0.63808	0.68345	NaN	1	0	Median	95363000	49269000	46095000	0	0	0	0	0	0	47452000	20616000	26836000	47911000	28652000	19258000	57370	3722	54042	349034;349035	470894;470895;470896	470895			3	
VVTQNICQYR	0	Unmodified	1279.6343	0.63430521	3499	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	30.241	29.369	2	0.0007075	25729	160511_QHF_FH_JSI10i_2	70.256	55.587			0.7418	0.89122	36.362	3	0	Median	NaN	NaN	NaN	0	0	Median	0.72938	0.89122	NaN	1	0	Median	0.7418	0.75264	NaN	1	0	Median	1.4086	1.5112	NaN	1	0	Median	152350000	70561000	81785000	0	0	0	32389000	12757000	19632000	79661000	42482000	37179000	40296000	15322000	24974000	57371	3499	54043	349036;349037;349038	470897;470898;470899;470900	470900			4	
VVTSENEAGK	1	Unmodified	1032.5088	0.50875357	1649	P49321	NASP	Nuclear autoantigenic sperm protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.57	5.34	4	1				2				1	2	2	2	7.9603	5.5856	2	2.0362E-09	5051	160511_QHF_FH_JSI10i_1	131.06	107.11			0.97294	0.95968	10.886	7	0	Median	1.1597	0.95435	NaN	1	0	Median	0.76164	0.90154	2.0287	2	0	Median	1.1054	1.0833	17.137	2	0	Median	0.98036	1.0477	2.2151	2	0	Median	3056400000	1342300000	1714200000	804390000	294550000	509840000	752960000	390370000	362590000	738370000	321420000	416950000	760720000	335950000	424780000	57372	1649	54044	349039;349040;349041;349042;349043;349044;349045	470901;470902;470903;470904;470905;470906;470907;470908;470909;470910;470911	470908			11	
VVTSEQHIPVSANLPSGYLGYQELGMGR	0	Unmodified	3001.4968	0.49675568	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	84.576	84.49	3	1.7959E-11	73359	160511_QHF_FH_JSI12i_3	84.529	77.953			1.1021	1.0968	2.9841	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1463	1.0739	NaN	1	1	Median	1.0597	1.1202	NaN	1	0	Median	41164000	16731000	24433000	0	0	0	0	0	0	19725000	6192700	13533000	21439000	10539000	10900000	57373	4555	54045	349046;349047	470912;470913;470914;470915;470916;470917	470916			6	
VVTTNYKPVANHQYNIEYER	1	Acetyl (K)	2479.2132	0.21318726	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.201	52.948	3	2.9262E-13	29214	160513_QHF_FH_JSI10Kac_6	122.77	104.47			0.93503	0.95713	6.6427	4	0	Median	1.27	1.0907	NaN	1	0	Median	0.79685	0.95114	NaN	1	0	Median	0.99119	0.95806	NaN	1	0	Median	0.88205	0.9562	NaN	1	0	Median	68040000	32742000	35299000	14294000	5210700	9083700	19579000	10124000	9454300	22207000	11201000	11006000	11960000	6205600	5754700	57374	1045	54046	349048;349049;349050;349051	470918;470919;470920;470921;470922;470923;470924	470924	875		7	
VVTTNYKPVANHQYNIEYER	1	Unmodified	2437.2026	0.20262257	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.481	41.898	4	0.0072675	34230	160511_QHF_FH_JSI9i_3	36.481	24.285			1.1059	0.90153	NaN	1	0	Median	1.1059	0.90153	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55625000	27684000	27941000	55625000	27684000	27941000	0	0	0	0	0	0	0	0	0	57375	1045	54046	349052	470925;470926	470925			2	
VVTTNYKPVANHQYNIEYERK	2	Acetyl (K)	2607.3082	0.30815028	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	56.397	47.065	4	3.3577E-13	25863	160513_QHF_FH_JSI10Kac_6	116.21	105.53			0.92109	0.95118	11.47	4	0	Median	1.1433	0.97655	NaN	1	0	Median	0.96146	1.1314	NaN	1	0	Median	0.88241	0.86309	NaN	1	0	Median	0.86137	0.92647	NaN	1	0	Median	112280000	58333000	53951000	18974000	6798900	12176000	46388000	25604000	20784000	23751000	13782000	9968500	23171000	12148000	11023000	57376	1045	54047	349053;349054;349055;349056	470927;470928;470929;470930;470931;470932;470933	470932	875		7	
VVTVFSVADGYSENNVFYGHHAK	1	Unmodified	2539.2132	0.21318726	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.58		1	4						6	3	4	1	3	76.474	71.685	3;4	8.7534E-90	38261	160513_QHF_FH_JSI10Kac_6	222.06	206.94			0.92659	0.97109	20.718	11	2	Median	0.89621	0.78051	12.258	3	1	Plateau	0.79483	0.93374	6.2498	4	1	Median	1.4249	1.3384	NaN	1	0	Median	1.3607	1.3567	6.8896	3	0	Plateau	1934700000	933280000	1001500000	358100000	194620000	163490000	316820000	176090000	140730000	142060000	56504000	85551000	1117800000	506070000	611690000	57377	472	54048	349057;349058;349059;349060;349061;349062;349063;349064;349065;349066;349067	470934;470935;470936;470937;470938;470939;470940;470941;470942;470943;470944;470945;470946;470947;470948;470949;470950;470951	470950			18	
VVTVGQFK	1	Unmodified	876.5069	0.50690308	5246	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.85	6.61	4	4	3				2	4	3	5	4	5	6	38.023	33.216	2	0.001083	28121	160511_QHF_FH_JSI12i_2	94.262	58.076			0.98673	0.95681	20.132	20	1	Median	1.1194	0.95921	25.182	5	0	Median	0.79758	0.95748	11.965	4	0	Median	0.96694	0.95441	19.17	5	1	Median	0.93037	0.97717	23.319	6	0	Median	3135200000	1597200000	1538000000	563470000	271300000	292170000	719170000	392150000	327020000	1000900000	501740000	499150000	851640000	432000000	419640000	57378	5246	54049	349068;349069;349070;349071;349072;349073;349074;349075;349076;349077;349078;349079;349080;349081;349082;349083;349084;349085;349086;349087	470952;470953;470954;470955;470956;470957;470958;470959;470960;470961;470962;470963;470964;470965;470966;470967;470968;470969;470970;470971;470972;470973;470974;470975	470955			24	
VVTVHLEK	1	Unmodified	923.54402	0.54401687	5497	Q9Y266	NUDC	Nuclear migration protein nudC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.72		5	2						2	1	2	3	3	25.847	23.22	2;3	0.0017225	18968	160511_QHF_FH_JSI12i_3	93.374	36.093			0.86855	0.78987	44.249	8	4	Median	0.81298	0.69544	NaN	1	0	Median	0.55646	0.67335	4.7329	2	1	Median	0.95756	0.9488	15.588	3	2	Median	0.98337	1.0468	100.3	2	1	Median	1181700000	629230000	552470000	85620000	45608000	40013000	131760000	72138000	59619000	337980000	154260000	183720000	626340000	357230000	269110000	57379	5497	54050	349088;349089;349090;349091;349092;349093;349094;349095;349096	470976;470977;470978;470979;470980;470981;470982;470983;470984;470985;470986	470984			11	
VVTVSEYYLRPVSQQEFDK	1	Unmodified	2286.1532	0.15321276	3906	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	2	3	3	3	71.882	68.318	3	4.166E-13	37046	160513_QHF_FH_JSI10Kac_6	128.38	103.49			0.91621	0.88557	18.056	11	0	Median	1.1691	1.0082	3.4212	2	0	Median	0.93555	1.1317	9.0625	3	0	Plateau	0.9099	0.84075	3.6959	3	0	Median	0.84295	0.8634	6.1375	3	0	Plateau	1988800000	1001700000	987100000	328300000	137340000	190960000	414300000	212940000	201360000	742760000	369580000	373180000	503400000	281810000	221590000	57380	3906	54051	349097;349098;349099;349100;349101;349102;349103;349104;349105;349106;349107	470987;470988;470989;470990;470991;470992;470993;470994;470995;470996;470997;470998;470999;471000;471001;471002;471003;471004	471004			18	
VVTVVTTK	1	Unmodified	845.52222	0.52221879	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.2	5.88		2					3				2	1	2	26.522	20.887	2	0.017935	13288	160513_QHF_FH_JSI11Kac_4	58.596	41.669			0.99894	1.0818	9.0856	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0216	1.2422	4.5841	2	0	Median	1.0868	1.0798	NaN	1	0	Median	0.96593	1.0544	3.6352	2	0	Median	195390000	101530000	93853000	0	0	0	98661000	50341000	48320000	29065000	13687000	15379000	67659000	37504000	30154000	57381	3216	54052	349108;349109;349110;349111;349112	471005;471006;471007;471008	471006			4	
VVTYGMANLLTGPK	1	Unmodified	1462.7854	0.78538612	4279	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.41	2	8	9					2	3	7	7	6	4	76.779	74.299	2;3	2.2464E-45	38461	160513_QHF_FH_JSI11Kac_6	194.96	148.5			1.0568	1.0058	13.482	24	4	Median	1.2299	1.0113	11.541	7	2	Median	0.83555	1.0069	15.952	7	2	Median	0.95646	0.96551	9.5923	6	0	Median	1.0001	1.0836	18.033	4	0	Median	3018500000	1449800000	1568800000	557980000	264380000	293600000	581580000	305680000	275900000	1013900000	471270000	542610000	865090000	408430000	456650000	57382	4279	54053	349113;349114;349115;349116;349117;349118;349119;349120;349121;349122;349123;349124;349125;349126;349127;349128;349129;349130;349131;349132;349133;349134;349135;349136	471009;471010;471011;471012;471013;471014;471015;471016;471017;471018;471019;471020;471021;471022;471023;471024;471025;471026;471027;471028;471029;471030;471031;471032;471033;471034;471035;471036;471037;471038;471039;471040;471041;471042;471043;471044;471045;471046;471047;471048;471049	471023			41	
VVVAENFDEIVNNENK	1	Unmodified	1831.8952	0.89520716	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.56	8	8	8				1		1	7	8	5	6	69.74	68.274	2;3	5.0581E-290	61003	160511_QHF_FH_JSI9i_1	370.44	346.18			0.99003	1.0022	22.743	23	4	Median	0.92354	0.76436	14.728	6	2	Median	0.80797	0.99115	20.983	8	1	Median	1.0785	1.0339	15.233	5	1	Median	1.115	1.1695	5.1232	4	0	Median	14421000000	6765800000	7655400000	2799700000	1380500000	1419300000	4534700000	2226700000	2308000000	3528200000	1625400000	1902800000	3558500000	1533200000	2025300000	57383	1344	54054	349137;349138;349139;349140;349141;349142;349143;349144;349145;349146;349147;349148;349149;349150;349151;349152;349153;349154;349155;349156;349157;349158;349159;349160;349161;349162	471050;471051;471052;471053;471054;471055;471056;471057;471058;471059;471060;471061;471062;471063;471064;471065;471066;471067;471068;471069;471070;471071;471072;471073;471074;471075;471076;471077;471078;471079;471080;471081;471082;471083;471084;471085;471086;471087;471088;471089;471090;471091;471092;471093;471094;471095;471096;471097;471098;471099;471100;471101;471102;471103;471104;471105;471106;471107;471108;471109	471096			59	
VVVDLSEQEEEK	1	Unmodified	1402.6828	0.68275477	5108	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		40.48	40.122	2	0.0022227	36244	160511_QHF_FH_JSI11i_1	71.555	49.026			0.9696	1.0164	29.32	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0689	1.2505	NaN	1	0	Median	0.8795	0.82604	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	159110000	75321000	83792000	0	0	0	92205000	43308000	48898000	66908000	32013000	34895000	0	0	0	57384	5108	54055	349163;349164	471110;471111	471110			2	
VVVEPPEGEEK	1	Unmodified	1210.6081	0.60813326	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	4.2	6					1				1	2	3	1	32.071	29.787	2	4.1769E-06	25870	160511_QHF_FH_JSI9i_1	116.3	100.1			1.0214	0.97318	6.1459	5	5	Median	1.1687	0.97318	NaN	1	1	Median	0.81202	0.93026	NaN	1	1	Median	0.99349	0.96746	8.6962	2	2	Median	1.0214	1.0481	NaN	1	1	Median	492480000	262770000	229710000	116990000	59002000	57993000	119960000	68439000	51517000	121610000	63638000	57974000	133920000	71692000	62225000	57385	2578	54056	349165;349166;349167;349168;349169;349170;349171	471112;471113;471114;471115;471116;471117;471118;471119	471119			8	
VVVEPVGPVGFKPETFR	1	Unmodified	1856.0196	0.019619815	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	72.603	72.021	3	0.0011252	64231	160511_QHF_FH_JSI11i_3	53.453	37.147			0.97622	0.88604	61.557	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0461	1.172	NaN	1	0	Median	0.97622	0.88604	NaN	1	0	Median	0.33683	0.36079	NaN	1	1	Median	85622000	46721000	38901000	0	0	0	21530000	10221000	11309000	51990000	27535000	24455000	12102000	8964300	3137700	57386	4558	54057	349172;349173;349174	471120;471121;471122;471123;471124	471121			5	
VVVFIKPTCPYCR	1	Unmodified	1637.8422	0.8421895	1446	P35754	GLRX	Glutaredoxin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	64.685	55.493	3	0.0073684	30398	160513_QHF_FH_JSI10Kac_6	46.481	39.423			0.93746	1.0356	25.163	4	0	Median	1.2309	1.0547	NaN	1	0	Median	0.86069	1.017	NaN	1	0	Median	0.67419	0.64244	NaN	1	0	Median	1.0211	1.1039	NaN	1	0	Median	331080000	173360000	157720000	54466000	23315000	31150000	167810000	85803000	82009000	81583000	51961000	29623000	27223000	12283000	14940000	57387	1446	54058	349175;349176;349177;349178	471125;471126;471127;471128;471129;471130;471131;471132	471131			8	
VVVGIVLWNIFNR	0	Unmodified	1527.8926	0.89256881	736	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				97.674	88.568	2	0.0053319	50780	160513_QHF_FH_JSI9Kac_6	83.783	68.517			1.2344	1.0639	NaN	1	0	Median	1.2344	1.0639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69080000	32734000	36346000	69080000	32734000	36346000	0	0	0	0	0	0	0	0	0	57388	736	54059	349179	471133	471133			0	
VVVHPLVLLSVVDHFNR	0	Unmodified	1942.1153	0.11525153	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	5.82			5						13	3	6	4	5	92.397	86.483	2;3;4	4.3147E-148	46379	160513_QHF_FH_JSI10Kac_6	222.45	203.62			0.97148	1.0117	20.171	18	4	Median	1.2521	1.0676	11.932	3	0	Plateau	0.83381	0.97388	5.1781	6	3	Median	1.1083	1.052	30.079	4	0	Median	1.0377	1.0726	30.005	5	1	Median	13333000000	6932800000	6400200000	2602500000	1159000000	1443400000	7719900000	4211400000	3508600000	1588400000	787820000	800590000	1422200000	774580000	647620000	57389	1748	54060	349180;349181;349182;349183;349184;349185;349186;349187;349188;349189;349190;349191;349192;349193;349194;349195;349196;349197	471134;471135;471136;471137;471138;471139;471140;471141;471142;471143;471144;471145;471146;471147;471148;471149;471150;471151;471152;471153;471154;471155	471151			22	
VVVHPLVLLSVVDHFNRIGK	1	Unmodified	2240.3157	0.31574226	1748	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			88.024	82.306	4;5	7.1E-06	46455	160513_QHF_FH_JSI10Kac_6	127.22	123.11			0.19111	0.22581	85.903	2	2	Median	NaN	NaN	NaN	0	0	Median	0.19111	0.22581	85.903	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	132660000	116430000	16228000	0	0	0	132660000	116430000	16228000	0	0	0	0	0	0	57390	1748	54061	349198;349199	471156;471157	471156			2	
VVVHQETEIADE	0	Unmodified	1367.6569	0.65687437	988	P11171	EPB41	Protein 4.1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	30.925	30.202	2	1.9874E-05	26930	160511_QHF_FH_JSI10i_1	111.61	99.56			0.6477	0.75635	14.968	3	0	Plateau	1.2351	1.002	NaN	1	0	Median	0.63743	0.74309	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81712	0.85154	NaN	1	0	Median	142580000	79340000	63238000	42773000	18141000	24633000	51362000	34569000	16793000	0	0	0	48442000	26630000	21813000	57391	988	54062	349200;349201;349202	471158;471159;471160;471161;471162	471161			5	
VVVITKHNDDEQYAWESSAGGSFTVR	1	Acetyl (K)	2936.3941	0.39406475	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		77.729	68.412	3	1.2042E-10	37394	160513_QHF_FH_JSI11Kac_6	133.95	115.85			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14260000	14260000	0	0	0	0	0	0	0	14260000	14260000	0	0	0	0	57392	898	54063	349203	471163	471163	654		1	
VVVITQNIDELHRK	1	Unmodified	1662.9417	0.94170385	5102	Q9NXA8	SIRT5	NAD-dependent protein deacylase sirtuin-5, mitochondrial	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		44.068	44.068	3	0.0029473	38886	160511_QHF_FH_JSI11i_3	46.408	34.263			0.83711	0.7983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83711	0.7983	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56002000	29419000	26583000	0	0	0	0	0	0	56002000	29419000	26583000	0	0	0	57393	5102	54064	349204	471164	471164			1	
VVVLGLLPR	0	Unmodified	964.64334	0.64333698	2629	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.54		4	4					3	4	4	4	4	3	79.643	74.928	2	3.7812E-11	39342	160513_QHF_FH_JSI11Kac_6	155.19	118.17			1.0094	1.01	12.583	15	0	Median	1.2164	1.035	9.704	4	0	Median	0.86486	1.0223	9.7508	4	0	Median	1.0403	0.98552	16.942	4	0	Median	0.97181	1.01	19.118	3	0	Median	4137200000	2089900000	2047300000	919820000	436420000	483400000	1379500000	698590000	680930000	1032500000	547780000	484670000	805450000	407130000	398320000	57394	2629	54065	349205;349206;349207;349208;349209;349210;349211;349212;349213;349214;349215;349216;349217;349218;349219	471165;471166;471167;471168;471169;471170;471171;471172;471173;471174;471175;471176;471177;471178;471179;471180;471181;471182;471183;471184;471185;471186;471187;471188;471189;471190;471191;471192;471193;471194;471195;471196	471175			32	
VVVLGSGGVGK	1	Unmodified	970.58113	0.58113065	5598	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.89	5.17	1	4	2				1	1		1	2	3	3	38.119	35.372	2	0.00013855	30095	160511_QHF_FH_JSI12i_2	83.998	67.796			1.0403	1.1028	55.604	9	2	Median	1.4924	1.3126	NaN	1	0	Median	0.96809	1.1556	7.8732	2	0	Median	1.1259	1.1028	77.281	3	1	Median	0.70555	0.75759	61.056	3	1	Median	726890000	381160000	345730000	129360000	62786000	66574000	235690000	123980000	111710000	195660000	101480000	94172000	166180000	92911000	73265000	57395	5598	54066	349220;349221;349222;349223;349224;349225;349226;349227;349228	471197;471198;471199;471200;471201;471202;471203;471204;471205;471206	471198			9	
VVVLMGSTSDLGHCEK	1	Unmodified	1730.8331	0.83314095	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.36	2	8	5					4	4	4	4	8	7	53.765	49.816	2;3	1.2626E-43	27202	160513_QHF_FH_JSI10Kac_6	178.14	165.94			0.90393	0.94911	29.249	22	4	Median	0.86082	0.75111	17.67	4	1	Linear	0.78594	0.93393	13.844	4	0	Median	0.74759	0.74747	21.36	8	3	Median	1.2511	1.3614	9.4227	6	0	Median	5419100000	2729000000	2690100000	489450000	229940000	259500000	901120000	497920000	403200000	2374100000	1270900000	1103200000	1654500000	730270000	924230000	57396	1206	54067	349229;349230;349231;349232;349233;349234;349235;349236;349237;349238;349239;349240;349241;349242;349243;349244;349245;349246;349247;349248;349249;349250;349251	471207;471208;471209;471210;471211;471212;471213;471214;471215;471216;471217;471218;471219;471220;471221;471222;471223;471224;471225;471226;471227;471228;471229;471230;471231;471232;471233;471234;471235;471236;471237;471238;471239;471240;471241;471242	471241			36	
VVVLMGSTSDLGHCEK	1	Oxidation (M)	1746.8281	0.82805557	1206	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	15	0.707							1	2	1		2	1	1	48.633	38.49	3	0.00030902	19920	160513_QHF_FH_JSI10Kac_5	67.605	58.674			1.082	1.2375	29.931	4	1	Median	NaN	NaN	NaN	0	0	Median	0.90569	1.0779	8.3127	2	0	Median	2.0674	2.0171	NaN	1	1	Median	1.2244	1.3396	NaN	1	0	Median	52152000	23678000	28473000	0	0	0	34621000	17451000	17169000	5197900	1466800	3731100	12333000	4760000	7573100	57397	1206	54067	349252;349253;349254;349255	471243;471244;471245	471245		831	3	
VVVNFAPTIQEIK	1	Unmodified	1456.829	0.8289655	3257	Q7Z3B1	NEGR1	Neuronal growth regulator 1	yes	yes	0	0	0	0	By MS/MS			By matching	2	0		2								1			1	78.746	77.783	2	0.052289	68711	160511_QHF_FH_JSI9i_2	61.344	22.776			0.89081	0.87675	11.349	2	0	Median	0.91255	0.80914	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8696	0.95	NaN	1	0	Median	34934000	17093000	17841000	15903000	8633600	7269900	0	0	0	0	0	0	19031000	8459900	10571000	57398	3257	54068	349256;349257	471246	471246			0	
VVVPPLPGK	1	Unmodified	904.57459	0.57458871	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.66	5	4	1				2			4	2	3	3	54.372	51.781	2	0.00010545	46720	160511_QHF_FH_JSI11i_1	93.262	81.894			0.91369	0.94564	8.224	12	2	Median	1.1348	0.94812	9.9168	4	2	Median	0.82268	0.99401	4.8937	2	0	Median	0.92159	0.90436	7.0359	3	0	Plateau	0.84066	0.85033	8.499	3	0	Median	1379900000	709830000	670060000	355150000	166240000	188910000	296920000	171000000	125920000	427310000	214980000	212320000	300510000	157610000	142900000	57399	419	54069	349258;349259;349260;349261;349262;349263;349264;349265;349266;349267;349268;349269	471247;471248;471249;471250;471251;471252;471253;471254;471255;471256;471257;471258;471259;471260;471261	471248			15	
VVVQVLAEEPEAVLK	1	Unmodified	1621.9291	0.92907347	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.79	0.766	8	7	4							5	5	5	4	83.473	82.881	2;3	2.949E-65	73753	160511_QHF_FH_JSI10i_2	227.81	187.22			0.90944	0.94006	11.674	19	0	Median	1.2061	1.0669	8.9983	5	0	Median	0.9008	1.0817	7.371	5	0	Median	0.78268	0.86683	7.9647	5	0	Linear	0.85773	0.98672	5.5847	4	0	Linear	2859600000	1474500000	1385100000	412040000	178560000	233490000	980600000	512020000	468590000	685220000	372090000	313120000	781760000	411830000	369930000	57400	1650	54070	349270;349271;349272;349273;349274;349275;349276;349277;349278;349279;349280;349281;349282;349283;349284;349285;349286;349287;349288	471262;471263;471264;471265;471266;471267;471268;471269;471270;471271;471272;471273;471274;471275;471276;471277;471278;471279;471280;471281;471282;471283;471284;471285;471286;471287;471288;471289;471290;471291;471292	471290			30	
VVVSGGR	0	Unmodified	672.39187	0.39187332	1041	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.79	6.07	6	5	2				2	4		3	5	6	5	7.2699	4.1437	2	0.00099273	2593	160513_QHF_FH_JSI10Kac_5	111.69	70.479			1.0112	1.0206	18.025	19	3	Median	1.3024	1.0308	8.0155	3	0	Plateau	0.80725	0.94063	6.3505	5	1	Median	1.083	1.0692	5.8132	6	1	Median	1.0089	1.0904	31.782	5	1	Median	49475000000	23667000000	25808000000	5900400000	2511800000	3388600000	9534600000	4946800000	4587800000	18496000000	8870900000	9625000000	15544000000	7337600000	8206600000	57401	1041	54071	349289;349290;349291;349292;349293;349294;349295;349296;349297;349298;349299;349300;349301;349302;349303;349304;349305;349306;349307	471293;471294;471295;471296;471297;471298;471299;471300;471301;471302;471303;471304;471305;471306;471307;471308;471309;471310;471311;471312;471313;471314;471315;471316	471316			24	
VVVSGLPPSGSWQDLK	1	Unmodified	1667.8883	0.88827129	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.61	0.487	14	22								10	8	9	9	75.643	74.947	2;3	4.8171E-40	67607	160511_QHF_FH_JSI10i_1	202.44	179.72			0.90476	0.98337	68.889	24	15	Median	1.1922	0.98527	122.17	6	5	Median	0.8504	1.0112	43.209	7	4	Median	1.0544	1.0564	14.93	6	2	Median	0.84686	0.95375	20.549	5	4	Median	2156600000	1478600000	678000000	1028500000	845370000	183140000	458380000	291500000	166880000	391280000	179810000	211470000	278470000	161960000	116510000	57402	2260	54072	349308;349309;349310;349311;349312;349313;349314;349315;349316;349317;349318;349319;349320;349321;349322;349323;349324;349325;349326;349327;349328;349329;349330;349331;349332;349333;349334;349335;349336;349337;349338;349339;349340;349341;349342;349343	471317;471318;471319;471320;471321;471322;471323;471324;471325;471326;471327;471328;471329;471330;471331;471332;471333;471334;471335;471336;471337;471338;471339;471340;471341;471342;471343;471344;471345;471346;471347;471348;471349;471350;471351;471352;471353;471354;471355;471356;471357;471358;471359;471360;471361;471362;471363;471364;471365;471366;471367;471368;471369;471370;471371;471372	471340			55	
VVVSHSTHR	0	Unmodified	1020.5465	0.54647648	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	7.33	6.13			6						3	3	4		2	5.2445	2.4071	2;3	7.9007E-05	2546	160511_QHF_FH_JSI9i_3	82.645	43.869			0.86892	0.82889	41.684	8	1	Median	1.2145	0.98068	47.554	3	0	Median	0.50929	0.59465	12.031	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.86892	0.90429	28.652	2	0	Median	1446600000	746430000	700200000	970690000	462350000	508330000	391130000	249000000	142130000	0	0	0	84822000	35081000	49741000	57403	3222	54073	349344;349345;349346;349347;349348;349349;349350;349351;349352	471373;471374;471375;471376;471377;471378;471379	471378			7	
VVVSPTK	1	Unmodified	728.44324	0.44324019	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			2	2	2	1	15.031	13.245	2	0.0062314	10958	160511_QHF_FH_JSI9i_1	91.906	27.13			1.0514	1.0222	18.709	7	0	Median	1.2519	1.0398	27.295	2	0	Median	0.97588	1.1483	16.453	2	0	Median	1.0091	1.0033	11.786	2	0	Median	0.74315	0.7901	NaN	1	0	Median	5130300000	2527500000	2602800000	1147100000	525530000	621530000	1146300000	629870000	516390000	1812500000	818890000	993620000	1024500000	553170000	471310000	57404	1154	54074	349353;349354;349355;349356;349357;349358;349359	471380;471381;471382;471383;471384;471385;471386;471387;471388	471385			9	
VVVSPTKK	2	Unmodified	856.5382	0.53820321	1154	P19338	NCL	Nucleolin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	3.81		2	8						1	3	4	2	2	9.9166	8.9629	2;3	0.00061109	6755	160511_QHF_FH_JSI9i_3	79.474	52.22			0.85401	0.94285	19.127	11	0	Median	1.5444	1.2129	1.9473	3	0	Median	0.79868	0.9428	11.292	4	0	Median	0.92114	0.87499	10.562	2	0	Median	0.7214	0.75479	10.199	2	0	Median	12803000000	6385400000	6417700000	2624300000	985100000	1639200000	2285200000	1197100000	1088200000	2832200000	1514100000	1318000000	5061400000	2689000000	2372400000	57405	1154	54075	349360;349361;349362;349363;349364;349365;349366;349367;349368;349369;349370	471389;471390;471391;471392;471393;471394;471395;471396;471397;471398;471399;471400;471401;471402;471403;471404;471405;471406	471397			18	
VVVSPTKK	2	Acetyl (K)	898.54877	0.54876789	1154	P19338	NCL	Nucleolin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		29.707	21.31	2	0.059316	12437	160513_QHF_FH_JSI10Kac_3	74.255	45.105			0.95204	1.0253	32.242	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0865	1.2879	NaN	1	0	Median	0.83422	0.8163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	16325000	8279800	8044800	0	0	0	12594000	6290900	6303200	3730500	1988900	1741600	0	0	0	57406	1154	54075	349371;349372	471407	471407			1	
VVVTMEHSAK	1	Unmodified	1099.5696	0.56957969	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.36		8	10					2	8	6	7	7	8	19.766	16.236	2;3	2.5419E-09	13218	160511_QHF_FH_JSI11i_2	128.38	102.49			0.90735	0.99031	43.137	25	7	Median	1.1661	0.99031	62.083	5	2	Median	0.79431	0.92408	14.976	6	1	Median	1.0628	1.0514	35.977	7	1	Median	0.89377	0.97429	45.926	7	3	Median	4901900000	2328400000	2573500000	326430000	127440000	198990000	1234000000	676010000	558020000	1844000000	775800000	1068200000	1497400000	749170000	748270000	57407	1865	54076	349373;349374;349375;349376;349377;349378;349379;349380;349381;349382;349383;349384;349385;349386;349387;349388;349389;349390;349391;349392;349393;349394;349395;349396;349397;349398;349399;349400	471408;471409;471410;471411;471412;471413;471414;471415;471416;471417;471418;471419;471420;471421;471422;471423;471424;471425;471426;471427;471428;471429;471430;471431;471432;471433;471434;471435;471436;471437;471438;471439	471423			32	
VVVTMEHSAK	1	Oxidation (M)	1115.5645	0.56449431	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.15	5.4		8	2					3		2	2	5	4	14.903	12.204	2;3	0.0013191	12930	160511_QHF_FH_JSI12i_3	90.657	73.881			0.9986	1.0408	45.862	12	3	Median	1.0797	0.92392	97.647	2	1	Median	0.72325	0.88682	7.9178	2	0	Median	1.1211	1.1183	39.799	4	1	Median	2.0947	1.3427	37.801	4	1	Linear	876310000	418480000	457830000	152120000	77568000	74548000	248980000	131950000	117030000	287940000	127790000	160150000	187280000	81174000	106100000	57408	1865	54076	349401;349402;349403;349404;349405;349406;349407;349408;349409;349410;349411;349412;349413	471440;471441;471442;471443;471444;471445;471446;471447;471448;471449;471450	471450		1550	9	
VVVTTPLHR	0	Unmodified	1020.608	0.60801411	964	P10244	MYBL2	Myb-related protein B	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				30.241	28.849	3	0.0010091	23464	160511_QHF_FH_JSI9i_3	48.091	34.088			1.4437	1.2105	NaN	1	0	Median	1.4437	1.2105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15019000	8328300	6690800	15019000	8328300	6690800	0	0	0	0	0	0	0	0	0	57409	964	54077	349414	471451;471452	471451			2	
VVVVAGETGSGK	1	Unmodified	1101.603	0.60298831	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	22.042	21.515	2	0.00010626	18256	160511_QHF_FH_JSI9i_1	88.681	80.148			1.2345	1.087	26.58	4	1	Linear	1.2428	1.0161	NaN	1	0	Median	1.0943	1.2713	NaN	1	0	Median	2.0286	1.9168	NaN	1	1	Median	1.2262	1.2497	NaN	1	0	Median	315700000	131750000	183950000	91101000	34773000	56328000	71706000	36106000	35600000	66194000	24467000	41727000	86703000	36408000	50295000	57410	3267	54078	349415;349416;349417;349418;349419	471453;471454;471455;471456;471457;471458;471459;471460	471459			8	
VVVVDCKK	2	Unmodified	945.53174	0.53173762	2825	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	11.825	11.709	2;3	0.0024209	8916	160511_QHF_FH_JSI12i_3	49.715	34.276			1.2769	1.3638	31.685	5	2	Median	NaN	NaN	NaN	0	0	Median	1.2769	1.5744	NaN	1	1	Median	0.85498	0.83609	4.784	2	1	Median	1.4179	1.4306	6.7661	2	0	Median	416120000	208530000	207590000	0	0	0	46992000	27364000	19629000	104590000	51111000	53482000	264540000	130060000	134480000	57411	2825	54079	349420;349421;349422;349423;349424	471461;471462;471463;471464	471464			4	
VVVVDSRPWLEGR	0	Unmodified	1510.8256	0.82561145	5320	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			58.362	56.827	3	0.020324	47560	160511_QHF_FH_JSI10i_3	40.725	17.12			0.65091	0.7575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.65091	0.7575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37393000	20117000	17276000	0	0	0	37393000	20117000	17276000	0	0	0	0	0	0	57412	5320	54080	349425	471465	471465			1	
VVVVGDQSAGK	1	Unmodified	1057.5768	0.57677356	409	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	yes	yes	0	0	0	0		By matching	By MS/MS		13	0						2					1	1		27.823	20.021	2	0.0080965	12273	160513_QHF_FH_JSI11Kac_3	56.729	46.742			0.77211	0.83105	0.22866	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69772	0.82971	NaN	1	0	Median	0.85443	0.8324	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4939700	2427200	2512500	0	0	0	1981300	877460	1103900	2958400	1549700	1408600	0	0	0	57413	409	54081	349426;349427	471466;471467	471467			2	
VVVVQAISALCQK	1	Unmodified	1413.8014	0.80137054	5708;5234	Q9Y678;Q9UBF2	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.74	6.46		6	4					8	5	4	6	7	6	75.948	70.369	2;3	3.1348E-20	34156	160513_QHF_FH_JSI10Kac_5	157.95	130.83			0.903	0.98585	39.133	22	4	Median	1.2676	1.0696	17.44	4	0	Median	0.79785	0.9574	32.733	6	1	Median	0.86414	0.82861	33.422	7	2	Median	1.2218	1.3476	56.808	5	1	Median	686480000	364960000	321520000	98146000	50297000	47849000	193350000	113630000	79713000	269760000	147180000	122590000	125220000	53856000	71368000	57414	5708;5234	54082	349428;349429;349430;349431;349432;349433;349434;349435;349436;349437;349438;349439;349440;349441;349442;349443;349444;349445;349446;349447;349448;349449;349450	471468;471469;471470;471471;471472;471473;471474;471475;471476;471477;471478;471479;471480;471481;471482;471483;471484;471485;471486;471487;471488;471489;471490;471491;471492;471493;471494;471495;471496	471491			28	
VVVVTGANTGIGK	1	Unmodified	1213.703	0.7030367	3700	Q8TC12	RDH11	Retinol dehydrogenase 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.56	4	4	3			1	4			3	6	3	4	43.288	39.804	2	5.2925E-05	36273	160511_QHF_FH_JSI12i_1	110.39	66.038			0.96745	1.0212	10.861	14	2	Median	1.3616	1.141	9.6582	3	1	Plateau	0.75757	0.90983	8.8953	4	0	Linear	0.92718	0.89074	9.9862	3	0	Median	1.008	1.1054	6.1067	4	1	Median	666240000	333080000	333160000	117440000	51466000	65972000	178260000	96697000	81567000	188170000	89869000	98300000	182370000	95050000	87316000	57415	3700	54083	349451;349452;349453;349454;349455;349456;349457;349458;349459;349460;349461;349462;349463;349464;349465;349466	471497;471498;471499;471500;471501;471502;471503;471504;471505;471506;471507;471508;471509;471510;471511;471512;471513;471514;471515;471516;471517;471518;471519;471520;471521;471522	471502			26	
VVVVVPNEEDWK	1	Unmodified	1411.7347	0.73473076	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		66.693	66.257	2	0.00039189	60261	160511_QHF_FH_JSI11i_1	88.496	70.631			0.28588	0.27625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28588	0.27625	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	25990000	20391000	5598400	0	0	0	0	0	0	25990000	20391000	5598400	0	0	0	57416	2785	54084	349467;349468	471523;471524	471523			2	
VVVVVPNEEDWKK	2	Unmodified	1539.8297	0.82969378	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	57.494	56.557	3	4.7083E-05	49692	160511_QHF_FH_JSI9i_2	65.043	62.075			0.85892	1.0282	12.413	4	0	Linear	0.87076	0.7584	NaN	1	0	Median	0.71965	0.88948	NaN	1	0	Median	1.0095	1.0142	NaN	1	0	Median	0.84724	0.94673	NaN	1	0	Median	952960000	504780000	448180000	133660000	73099000	60559000	182700000	100000000	82695000	359420000	185800000	173620000	277190000	145880000	131310000	57417	2785	54085	349469;349470;349471;349472	471525;471526;471527;471528;471529;471530	471527			6	
VVVWDWVR	0	Unmodified	1057.5709	0.57090032	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.4	5.31		1	3						1	1	1	2	1	80.501	78.338	2	0.00042359	39468	160513_QHF_FH_JSI9Kac_6	113.7	87.094			2.4017	2.4934	77.57	5	4	Median	1.3158	1.1227	NaN	1	0	Median	7.5809	8.8921	NaN	1	1	Median	2.8686	2.7747	47.437	2	2	Median	2.4017	2.4934	NaN	1	1	Median	705200000	109400000	595800000	103350000	42603000	60744000	214130000	6187900	207940000	272180000	39503000	232680000	115540000	21109000	94428000	57418	2962	54086	349473;349474;349475;349476;349477	471531;471532;471533;471534;471535	471534			5	
VVVYLQK	1	Unmodified	847.51674	0.51673948	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.44	6.72	2	4	1				1	4	4	4	4	5	3	42.382	36.432	2	0.0092953	19708	160513_QHF_FH_JSI9Kac_5	85.306	42.533			0.94813	0.91981	29.152	16	2	Median	1.2017	1.027	26.373	4	0	Median	0.68293	0.8233	29.782	4	1	Median	1.0167	1.0354	14.229	5	0	Median	0.84519	0.91601	44.911	3	1	Median	1594600000	796690000	797930000	330470000	137460000	193010000	366600000	202790000	163810000	640930000	340090000	300850000	256610000	116350000	140260000	57419	1806	54087	349478;349479;349480;349481;349482;349483;349484;349485;349486;349487;349488;349489;349490;349491;349492;349493	471536;471537;471538;471539;471540;471541;471542;471543;471544;471545;471546;471547;471548;471549;471550;471551;471552;471553;471554;471555;471556	471538			21	
VVVYSNTIQSIIAIIR	0	Unmodified	1788.0509	0.050919944	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	96.841	88.317	2;3	5.6238E-182	50005	160513_QHF_FH_JSI9Kac_6	305.98	266.71			0.93672	0.82412	23.392	9	0	Median	0.9403	0.80358	3.1529	2	0	Median	0.5968	0.69735	7.2239	2	0	Median	1.2874	1.2138	2.8737	2	0	Median	0.7944	0.84185	21.203	3	0	Median	2082300000	1128100000	954190000	432700000	226480000	206220000	590810000	383520000	207290000	629650000	287480000	342170000	429100000	230590000	198510000	57420	915	54088	349494;349495;349496;349497;349498;349499;349500;349501;349502	471557;471558;471559;471560;471561;471562;471563;471564;471565;471566;471567	471559			11	
VVWVEESDK	1	Unmodified	1089.5342	0.53424004	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.29	4.4	3	3					1			1	2	2	2	37.699	35.586	2	0.00014996	31808	160511_QHF_FH_JSI10i_1	89.355	76.318			0.9899	1.1351	15.769	6	2	Median	NaN	NaN	NaN	0	0	Median	0.9899	1.1773	8.9628	2	1	Median	1.3011	1.2968	15.026	2	1	Median	0.91018	0.96127	1.7986	2	0	Median	1448100000	689840000	758210000	0	0	0	511500000	244940000	266560000	619500000	280030000	339470000	317050000	164870000	152180000	57421	154	54089	349503;349504;349505;349506;349507;349508;349509	471568;471569;471570;471571;471572;471573	471569			6	
VVWVEESDKR	1	Unmodified	1245.6354	0.63535107	154	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		9	6							3	3	5	4	27.269	26.689	2;3	7.157E-06	22012	160511_QHF_FH_JSI12i_3	118.5	97.975			0.7337	0.81838	61.922	12	3	Median	1.5443	1.341	105.41	2	1	Median	0.61747	0.77133	21.649	3	1	Median	1.2506	1.2528	81.958	3	0	Median	0.33716	0.37081	62.58	4	1	Linear	1668500000	928630000	739840000	170670000	49413000	121260000	433360000	285710000	147650000	503180000	289390000	213800000	561270000	304130000	257140000	57422	154	54090	349510;349511;349512;349513;349514;349515;349516;349517;349518;349519;349520;349521;349522;349523;349524	471574;471575;471576;471577;471578;471579;471580;471581;471582;471583;471584;471585;471586;471587;471588;471589	471589			16	
VVYASATGASEPR	0	Unmodified	1306.6517	0.65172941	16	A3KN83;Q9Y2G9	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	yes	no	0	0	0	0		By MS/MS			1	0	1										1			22.358	22.082	2	0.005332	19227	160511_QHF_FH_JSI10i_1	82.261	69.733			0.64641	0.75789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64641	0.75789	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37935000	20649000	17286000	0	0	0	37935000	20649000	17286000	0	0	0	0	0	0	57423	16	54091	349525	471590	471590			0	
VVYENAYGQFIGPHR	0	Unmodified	1748.8635	0.86345352	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	5.31		8	9						4	6	5	7	3	56.512	53.812	2;3	8.7559E-22	46173	160511_QHF_FH_JSI12i_3	169.79	163.06			0.91299	1.0564	21.463	18	2	Median	1.3088	1.1208	15.978	5	1	Median	0.90383	1.0704	11.071	5	0	Median	0.91215	0.8618	19.27	5	1	Median	0.76342	0.73722	4.3427	3	0	Plateau	6879000000	3495600000	3383400000	811420000	351000000	460420000	1910700000	903820000	1006900000	2661800000	1466000000	1195700000	1495100000	774750000	720310000	57424	2778	54092	349526;349527;349528;349529;349530;349531;349532;349533;349534;349535;349536;349537;349538;349539;349540;349541;349542;349543;349544;349545;349546	471591;471592;471593;471594;471595;471596;471597;471598;471599;471600;471601;471602;471603;471604;471605;471606;471607;471608;471609;471610;471611;471612;471613;471614;471615;471616;471617;471618;471619;471620;471621;471622	471616			32	
VVYFGDSMHSDIFPAR	0	Unmodified	1839.8614	0.86140461	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		4	5						2	2	2	4	3	73.597	71.28	2;3	4.7961E-07	62538	160511_QHF_FH_JSI12i_3	96.103	82.44			1.1921	1.1895	15.328	10	3	Median	1.5433	1.3196	18.074	2	1	Median	0.95125	1.1375	18.672	2	1	Median	1.2497	1.1869	16.849	4	1	Median	1.0507	1.1028	14.111	2	0	Median	924380000	452520000	471860000	105520000	44814000	60706000	136770000	80836000	55932000	387540000	192610000	194930000	294560000	134260000	160290000	57425	2970	54093	349547;349548;349549;349550;349551;349552;349553;349554;349555;349556;349557	471623;471624;471625;471626;471627;471628;471629;471630;471631;471632;471633;471634;471635	471635			13	
VVYFGDSMHSDIFPAR	0	Oxidation (M)	1855.8563	0.85631924	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	63.46	63.174	3	0.016432	54355	160511_QHF_FH_JSI12i_3	35.329	29.031			1.0219	1.0446	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0219	1.0446	NaN	1	0	Median	68158000	35698000	32460000	0	0	0	0	0	0	0	0	0	68158000	35698000	32460000	57426	2970	54093	349558	471636	471636		2176	1	
VVYGDTDSVMCR	0	Unmodified	1400.6064	0.60643548	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	37.526	37.115	2	0.010843	33425	160511_QHF_FH_JSI11i_1	47.228	45.584			1.1108	0.92585	18.65	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1108	1.294	NaN	1	0	Median	0.94999	0.92585	NaN	1	0	Median	1.2178	1.2621	NaN	1	0	Median	186730000	92605000	94120000	0	0	0	51050000	28908000	22142000	82806000	39212000	43594000	52869000	24486000	28383000	57427	1307	54094	349559;349560;349561	471637;471638;471639;471640;471641	471638			5	
VVYGGGAAEISCALAVSQEADK	1	Unmodified	2194.0576	0.057597819	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	1	2	2	78.53	77.909	3	7.767E-08	70596	160511_QHF_FH_JSI10i_1	84.946	77.143			0.84744	0.83515	22.39	6	1	Median	0.90964	0.74095	NaN	1	0	Median	0.73575	0.88516	NaN	1	0	Median	0.68156	0.68144	20.542	2	0	Median	0.98215	1.0515	4.3189	2	1	Median	583250000	336670000	246580000	48209000	25400000	22809000	126190000	76276000	49916000	253760000	145530000	108240000	155080000	89468000	65616000	57428	1630	54095	349562;349563;349564;349565;349566;349567	471642;471643;471644;471645;471646;471647;471648;471649;471650;471651	471648			10	
VVYIFGPPVK	1	Unmodified	1117.6536	0.65356732	1693	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.31	3	6	4			3	3	7	9	6	10	10	9	73.5	67.301	2;3	1.9323E-06	35028	160513_QHF_FH_JSI9Kac_5	144.83	134.12			0.98437	1.0172	17.914	32	3	Median	1.22	1.0214	20.535	6	1	Median	0.84229	1.0211	17.292	9	1	Median	1.0239	1.0091	19.742	9	1	Median	0.9404	1.0201	16.169	8	0	Median	5687500000	2725800000	2961800000	1023100000	469120000	554000000	1699900000	908680000	791180000	1868700000	845470000	1023200000	1095900000	502490000	593420000	57429	1693	54096	349568;349569;349570;349571;349572;349573;349574;349575;349576;349577;349578;349579;349580;349581;349582;349583;349584;349585;349586;349587;349588;349589;349590;349591;349592;349593;349594;349595;349596;349597;349598;349599;349600;349601;349602	471652;471653;471654;471655;471656;471657;471658;471659;471660;471661;471662;471663;471664;471665;471666;471667;471668;471669;471670;471671;471672;471673;471674;471675;471676;471677;471678;471679;471680;471681;471682;471683;471684;471685;471686;471687;471688;471689;471690;471691;471692;471693;471694;471695;471696;471697;471698;471699;471700	471660			49	
VVYNVLSELEK	1	Unmodified	1291.7024	0.702368	1231	P23497;Q9H930	SP100;SP140L	Nuclear autoantigen Sp-100;Nuclear body protein SP140-like protein	yes	no	0	0	0	0	By MS/MS				2	0		1								1				77.816	77.068	2	0.041357	67932	160511_QHF_FH_JSI9i_2	37.508	20.84			0.81634	0.71683	NaN	1	0	Median	0.81634	0.71683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35968000	18115000	17854000	35968000	18115000	17854000	0	0	0	0	0	0	0	0	0	57430	1231	54097	349603	471701	471701			1	
VVYQPGYPK	1	Unmodified	1049.5546	0.55458155	3117	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								1	1	2	2	30.924	30.279	2	0.0074887	27291	160511_QHF_FH_JSI12i_1	53.351	32.831			1.0081	1.1284	27.729	6	1	Median	0.83311	0.7255	NaN	1	0	Median	0.88791	1.053	NaN	1	0	Median	1.4471	1.4292	22.253	2	1	Median	1.0081	1.087	15.075	2	0	Median	251570000	119170000	132400000	24322000	11702000	12620000	55617000	32414000	23202000	100440000	40104000	60339000	71190000	34948000	36243000	57431	3117	54098	349604;349605;349606;349607;349608;349609	471702;471703;471704;471705;471706	471704			5	
VVYSAFLMATPR	0	Unmodified	1353.7115	0.7114929	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.2	6.62		2	3					1	4	3	3	2	2	77.331	72.616	2	2.3794E-39	39283	160513_QHF_FH_JSI10Kac_6	192.1	192.1			1.0907	1.1427	17.465	10	1	Median	1.5039	1.314	31.73	3	0	Plateau	0.77777	0.92162	7.3463	3	1	Plateau	1.234	1.1755	1.1404	2	0	Median	1.0907	1.191	7.2615	2	0	Median	1731200000	805810000	925390000	387320000	157640000	229680000	471680000	259550000	212130000	620580000	278180000	342400000	251610000	110440000	141180000	57432	2609	54099	349610;349611;349612;349613;349614;349615;349616;349617;349618;349619	471707;471708;471709;471710;471711;471712;471713;471714;471715;471716;471717;471718;471719;471720;471721;471722;471723;471724	471724			18	
VVYSAFLMATPR	0	Oxidation (M)	1369.7064	0.70640752	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.9	0.35								1	6	2	1	2	2	73.637	64.465	2	5.9418E-24	34299	160513_QHF_FH_JSI9Kac_6	162.36	132.1			0.89797	0.93648	9.9312	7	4	Median	1.207	1.0329	16.42	2	0	Median	0.89797	1.0255	NaN	1	0	Median	0.93086	0.89409	6.9657	2	2	Median	0.8736	0.92968	1.0301	2	2	Median	477190000	241780000	235420000	111580000	47456000	64124000	112800000	62934000	49866000	143560000	73949000	69614000	109250000	57438000	51814000	57433	2609	54099	349620;349621;349622;349623;349624;349625;349626	471725;471726;471727;471728;471729;471730;471731;471732;471733;471734	471729		2050	10	
VVYSGDTMPCEALVR	0	Unmodified	1695.796	0.79602716	4348	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		59.925	59.498	2	0.00019277	53939	160511_QHF_FH_JSI11i_1	89.283	74.593			1.0718	1.0332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0718	1.0332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79898000	47216000	32681000	0	0	0	0	0	0	79898000	47216000	32681000	0	0	0	57434	4348	54100	349627	471735	471735			1	
VVYSPVDGTRPSESIVVPGNTR	0	Unmodified	2328.2074	0.2073736	4305	Q99715	COL12A1	Collagen alpha-1(XII) chain	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		58.504	58.504	3	0.001162	51928	160511_QHF_FH_JSI11i_3	42.711	33.892			0.74933	0.71758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74933	0.71758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29998000	20075000	9923200	0	0	0	0	0	0	29998000	20075000	9923200	0	0	0	57435	4305	54101	349628;349629	471736;471737	471736			2	
VVYTPESLYK	1	Unmodified	1197.6281	0.62814043	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			51.89	51.481	2	0.0062388	46383	160511_QHF_FH_JSI10i_1	62.582	42.441			0.60179	0.70368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.60179	0.70368	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	57580000	34459000	23122000	0	0	0	57580000	34459000	23122000	0	0	0	0	0	0	57436	2279	54102	349630;349631	471738;471739	471738			2	
VWAEPCLIDAAK	1	Unmodified	1371.6857	0.68567208	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			67.599	67.29	2	0.015565	60914	160511_QHF_FH_JSI10i_1	51.436	40.216			0.59192	0.66354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59192	0.66354	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	32870000	22897000	9973100	0	0	0	32870000	22897000	9973100	0	0	0	0	0	0	57437	4715	54103	349632	471740	471740			1	
VWAEYALK	1	Unmodified	978.51747	0.51746776	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.514	49.534	2	0.0076348	42603	160511_QHF_FH_JSI11i_2	58.917	36.786			0.92419	0.99005	6.214	4	0	Median	1.251	1.0668	NaN	1	0	Median	0.79025	0.96164	NaN	1	0	Median	1.0056	1.0193	NaN	1	0	Median	0.8494	0.92702	NaN	1	0	Median	735160000	385840000	349320000	112120000	58405000	53719000	139380000	86877000	52503000	257250000	115820000	141430000	226400000	124740000	101660000	57438	3101	54104	349633;349634;349635;349636	471741;471742;471743;471744;471745;471746;471747	471744			7	
VWAHYEEQPVEEVMPVLEEK	1	Unmodified	2440.1621	0.16206289	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.39	0.487		11	7							5	1	5	7	84.323	83.925	3	6.1036E-19	74183	160511_QHF_FH_JSI11i_3	158.74	155.08			0.81403	0.82193	47.05	15	6	Median	0.68156	0.59057	61.006	4	2	Median	NaN	NaN	NaN	0	0	Median	0.80968	0.81143	38.315	5	2	Median	0.90412	0.91903	29.206	6	2	Median	2300100000	1142500000	1157700000	265640000	138120000	127510000	0	0	0	722530000	345890000	376640000	1312000000	658450000	653520000	57439	3213	54105	349637;349638;349639;349640;349641;349642;349643;349644;349645;349646;349647;349648;349649;349650;349651;349652;349653;349654	471748;471749;471750;471751;471752;471753;471754;471755;471756;471757;471758;471759;471760;471761;471762;471763;471764;471765;471766;471767;471768;471769;471770;471771;471772;471773;471774;471775;471776;471777;471778;471779;471780;471781	471750			33	
VWAHYEEQPVEEVMPVLEEK	1	Oxidation (M)	2456.157	0.15697751	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	67.578	67.281	3	3.9437E-10	58195	160511_QHF_FH_JSI12i_3	116.73	109.74			1.0988	1.1419	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0988	1.1419	NaN	1	0	Median	46779000	23032000	23747000	0	0	0	0	0	0	0	0	0	46779000	23032000	23747000	57440	3213	54105	349655;349656	471782;471783;471784;471785	471785		2220	4	
VWDAVSGDELMTLAHK	1	Unmodified	1770.8611	0.86107026	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.615	3	8	2							1	4	4	4	78.307	77.581	2;3	2.4269E-52	68326	160511_QHF_FH_JSI11i_2	179.17	167			0.88062	0.92039	15.166	13	4	Median	1.0672	0.91168	NaN	1	0	Median	0.82321	0.96821	5.8466	4	0	Median	0.92243	0.91572	13.953	4	2	Median	0.82997	0.87549	24.344	4	2	Median	3442400000	1688100000	1754300000	503140000	191620000	311520000	811890000	434710000	377190000	1418000000	716020000	701980000	709330000	345720000	363610000	57441	5595	54106	349657;349658;349659;349660;349661;349662;349663;349664;349665;349666;349667;349668;349669	471786;471787;471788;471789;471790;471791;471792;471793;471794;471795;471796;471797;471798;471799;471800;471801;471802;471803;471804;471805;471806;471807	471801			22	
VWDDGIIDPADTR	0	Unmodified	1471.6943	0.69432251	4852	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	63.486	62.84	2	0.0009024	57041	160511_QHF_FH_JSI12i_1	67.022	51.757			1.2397	1.2918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2397	1.2918	NaN	1	0	Median	136380000	62634000	73742000	0	0	0	0	0	0	0	0	0	136380000	62634000	73742000	57442	4852	54107	349670	471808	471808			1	
VWDISGLR	0	Unmodified	944.50797	0.50796571	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.792	58.87	2	0.0034924	50511	160511_QHF_FH_JSI12i_2	72.138	46.029			1.0115	1.1291	6.883	4	0	Median	1.4035	1.1923	NaN	1	0	Median	0.95314	1.1588	NaN	1	0	Median	1.0735	1.1002	NaN	1	0	Median	0.9337	1.0193	NaN	1	0	Median	1113500000	546110000	567440000	139130000	63446000	75680000	252220000	136400000	115830000	478570000	220870000	257710000	243630000	125400000	118220000	57443	1805	54108	349671;349672;349673;349674	471809;471810;471811	471809			3	
VWDISGLRK	1	Unmodified	1072.6029	0.60292873	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	1	By matching	By matching	By MS/MS	By matching	3	0			4							1	1	1	1	48.085	47.23	3	0.013348	41391	160511_QHF_FH_JSI11i_3	34.721	34.721			0.91277	0.8688	18.226	4	0	Median	1.0069	0.8038	NaN	1	0	Median	0.82742	0.93906	NaN	1	0	Median	1.2061	1.1453	NaN	1	0	Median	0.75816	0.76364	NaN	1	0	Median	450780000	229910000	220870000	161100000	66061000	95035000	108630000	61098000	47527000	126080000	71083000	54997000	54975000	31666000	23308000	57444	1805	54109	349675;349676;349677;349678	471812	471812			1	
VWDLAQQVVLSSYR	0	Unmodified	1662.873	0.87295558	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.32		10							4	4	4	3	3	86.724	83.751	2;3	3.0209E-24	43140	160513_QHF_FH_JSI10Kac_6	158.2	106.28			0.84923	0.8847	24.934	13	7	Median	1.0135	0.8847	19.298	3	2	Median	0.76937	0.92641	26.42	4	2	Median	0.97229	0.97066	40.047	3	1	Median	0.65487	0.69836	18.49	3	2	Plateau	847400000	455210000	392190000	143470000	74822000	68644000	268340000	142370000	125970000	236510000	124310000	112200000	199080000	113710000	85374000	57445	4355	54110	349679;349680;349681;349682;349683;349684;349685;349686;349687;349688;349689;349690;349691;349692	471813;471814;471815;471816;471817;471818;471819;471820;471821;471822;471823;471824;471825;471826;471827;471828;471829;471830;471831	471831			19	
VWDLFPEADK	1	Unmodified	1218.5921	0.59208927	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.57	5.97	1	4						2		1	1	3	2	79.043	75.527	2	0.00074073	68345	160511_QHF_FH_JSI9i_2	70.056	50.962			1.0719	1.092	8.0925	7	1	Median	1.2448	1.0662	NaN	1	0	Median	0.86219	1.0593	NaN	1	0	Median	1.2334	1.1704	8.5929	3	1	Median	0.97817	1.072	7.9249	2	0	Median	1184600000	592940000	591640000	193270000	71535000	121740000	222690000	121590000	101100000	478590000	224070000	254530000	290010000	175750000	114270000	57446	40	54111	349693;349694;349695;349696;349697;349698;349699	471832;471833;471834;471835;471836;471837;471838;471839;471840;471841;471842	471839			11	
VWDPDNPLTDR	0	Unmodified	1326.6204	0.62042929	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	1	2	3	56.69	55.877	2	0.0024558	50786	160511_QHF_FH_JSI11i_1	72.325	62.437			0.91099	0.90831	20.587	7	7	Median	0.91099	0.75828	NaN	1	1	Median	0.75437	0.88217	NaN	1	1	Median	0.9333	0.91729	14.965	2	2	Median	1.0589	1.1607	20.695	3	3	Median	767970000	391760000	376210000	68531000	31219000	37312000	156640000	90498000	66139000	264260000	132840000	131420000	278540000	137200000	141340000	57447	606	54112	349700;349701;349702;349703;349704;349705;349706	471843;471844;471845;471846;471847;471848;471849	471843			7	
VWDVESGSLK	1	Unmodified	1118.5608	0.56078914	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	47.471	46.076	2	0.051505	39403	160511_QHF_FH_JSI12i_2	42.864	18.013			0.73242	0.78308	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73242	0.78308	NaN	1	1	Median	41380000	24333000	17047000	0	0	0	0	0	0	0	0	0	41380000	24333000	17047000	57448	4592	54113	349707	471850	471850			1	
VWDVRPFAPK	1	Unmodified	1213.6608	0.66077796	4029	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	55.108	54.271	2;3	0.00039526	47915	160511_QHF_FH_JSI11i_3	68.893	54.017			0.93573	0.92386	8.4996	8	0	Median	1.1454	0.93106	7.0427	2	0	Median	0.80834	0.92415	6.316	2	0	Median	1.0431	0.97521	13.707	2	0	Median	0.86996	0.88687	11.726	2	0	Median	2574200000	1126500000	1447800000	701670000	253430000	448240000	561370000	307360000	254010000	777130000	329800000	447330000	534060000	235890000	298170000	57449	4029	54114	349708;349709;349710;349711;349712;349713;349714;349715	471851;471852;471853;471854;471855;471856;471857	471852			7	
VWDYETGDFER	0	Unmodified	1415.5994	0.59935949	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	54.798	53.989	2	3.4655E-05	48936	160511_QHF_FH_JSI11i_1	98.048	91.744			1.0417	1.0667	6.518	8	0	Median	1.2428	1.032	6.3178	2	0	Median	0.97711	1.1759	2.4206	2	0	Median	1.0781	1.0524	0.26514	2	0	Median	0.98302	1.0602	6.7419	2	0	Median	1161300000	571340000	590010000	198140000	93555000	104590000	302140000	149760000	152390000	408340000	200590000	207750000	252720000	127440000	125280000	57450	1553	54115	349716;349717;349718;349719;349720;349721;349722;349723	471858;471859;471860;471861;471862;471863;471864;471865;471866;471867;471868;471869	471859			12	
VWEFYHYR	0	Unmodified	1198.556	0.55597854	5102	Q9NXA8	SIRT5	NAD-dependent protein deacylase sirtuin-5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	60.119	50.83	3	4.9029E-06	27759	160513_QHF_FH_JSI10Kac_6	119.29	103.15			1.0081	1.0817	8.1164	4	0	Median	1.2753	1.0948	NaN	1	0	Median	0.92067	1.099	NaN	1	0	Median	1.1039	1.0688	NaN	1	0	Median	0.87185	0.92626	NaN	1	0	Median	156110000	77258000	78852000	24242000	11042000	13200000	74711000	37555000	37156000	26867000	13572000	13295000	30289000	15088000	15201000	57451	5102	54116	349724;349725;349726;349727	471870;471871;471872;471873;471874;471875;471876	471876			7	
VWELGGCANK	1	Unmodified	1132.5335	0.53352853	899	P08240	SRPR	Signal recognition particle receptor subunit alpha	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	39.626	38.26	2	0.013089	32620	160511_QHF_FH_JSI12i_2	44.377	34.112			1.8985	2.1163	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8985	2.1163	NaN	1	0	Median	34162000	16345000	17817000	0	0	0	0	0	0	0	0	0	34162000	16345000	17817000	57452	899	54117	349728	471877	471877			1	
VWEQIDQMK	1	Unmodified	1175.5645	0.56449431	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	46.587	45.196	2	0.011448	38571	160511_QHF_FH_JSI12i_2	48.794	28.465			1.3544	1.4966	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3544	1.4966	NaN	1	0	Median	126670000	61451000	65216000	0	0	0	0	0	0	0	0	0	126670000	61451000	65216000	57453	2517	54118	349729	471878;471879	471878			2	
VWGMGLNK	1	Unmodified	903.46366	0.46365805	4120	Q96I51	WBSCR16	Williams-Beuren syndrome chromosomal region 16 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	44.001	43.881	2	0.0010903	37444	160511_QHF_FH_JSI12i_3	94.163	94.163			1.1053	1.0871	7.1029	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1001	1.0339	NaN	1	0	Median	1.1106	1.1431	NaN	1	0	Median	277370000	134230000	143140000	0	0	0	0	0	0	95787000	40140000	55647000	181590000	94093000	87493000	57454	4120	54119	349730;349731	471880;471881	471881			2	
VWGNVGTVEWADPIEDPDPEVMAK	1	Unmodified	2653.237	0.23701875	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	99.939	99.886	3	1.4188E-07	90386	160511_QHF_FH_JSI10i_1	66.52	54.732			1.1157	1.1735	18.774	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.91456	1.0357	24.512	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1157	1.1735	NaN	1	1	Median	98157000	44570000	53587000	0	0	0	60292000	28221000	32071000	0	0	0	37864000	16348000	21516000	57455	423	54120	349732;349733;349734;349735;349736;349737	471882;471883;471884;471885;471886;471887	471886			6	
VWGQVWHSIQTLK	1	Unmodified	1580.8463	0.8463469	218	O14920	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	76.147	68.008	3	0.00056559	37539	160513_QHF_FH_JSI10Kac_6	73.386	52.653			0.96598	1.0615	54.402	3	1	Median	1.8779	1.5952	NaN	1	0	Median	0.46562	0.54311	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96598	1.0615	NaN	1	0	Median	124120000	71746000	52377000	32878000	11405000	21473000	80589000	54050000	26539000	0	0	0	10656000	6290500	4365200	57456	218	54121	349738;349739;349740	471888;471889	471889			2	
VWGTTCTK	1	Unmodified	951.4484	0.44840192	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	15.887	15.311	2	0.00821	12277	160511_QHF_FH_JSI11i_2	57.177	33.205			1.0913	1.1558	27.024	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95221	0.95473	NaN	1	0	Median	1.2507	1.3991	NaN	1	0	Median	249410000	133370000	116040000	0	0	0	0	0	0	130800000	70589000	60214000	118600000	62780000	55823000	57457	678	54122	349741;349742	471890;471891;471892;471893	471892			4	
VWGTTCTKHPHIK	2	Acetyl (K)	1605.8086	0.80858118	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.785	29.271	3	0.0019646	16218	160513_QHF_FH_JSI11Kac_6	64.65	50.934			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1382500	1382500	0	0	0	0	0	0	0	1382500	1382500	0	0	0	0	57458	678	54123	349743	471894	471894	337		1	
VWGVPIPVFHHK	1	Unmodified	1414.7874	0.78737546	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.36	5.01			27						6	15	9	5	4	74.777	72.213	3;4	3.2373E-05	61106	160511_QHF_FH_JSI10i_3	69.979	64.7			0.93694	0.93505	25.802	29	5	Median	1.228	1.0307	21.656	12	2	Median	0.77463	0.88809	32.36	9	2	Median	1.0099	0.92959	22.08	4	0	Median	0.8298	0.84647	10.114	4	1	Median	791850000	416650000	375200000	159880000	77903000	81973000	251310000	151740000	99570000	151080000	67530000	83549000	229580000	119470000	110110000	57459	4983	54124	349744;349745;349746;349747;349748;349749;349750;349751;349752;349753;349754;349755;349756;349757;349758;349759;349760;349761;349762;349763;349764;349765;349766;349767;349768;349769;349770;349771;349772;349773;349774;349775;349776	471895;471896;471897;471898;471899;471900;471901;471902;471903;471904;471905;471906;471907;471908;471909;471910;471911;471912;471913;471914;471915;471916;471917;471918;471919;471920;471921;471922;471923;471924;471925;471926;471927;471928;471929;471930;471931;471932;471933;471934;471935;471936;471937;471938;471939	471903			43	
VWGVPIPVFHHKTK	2	Acetyl (K)	1685.9406	0.94058163	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		76.357	67.032	4	0.00038509	36556	160513_QHF_FH_JSI11Kac_6	67.964	61.801			0.19686	0.19062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.19686	0.19062	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	21927000	18392000	3535300	0	0	0	0	0	0	21927000	18392000	3535300	0	0	0	57460	4983	54125	349777	471940	471940	3286		1	
VWIGIKK	2	Unmodified	842.53781	0.53780928	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	36.018	35.257	3	0.0045808	29524	160511_QHF_FH_JSI12i_3	59.205	31.68			1.0761	1.0575	19.721	4	1	Median	0.99179	0.79245	NaN	1	0	Median	0.83711	1.0179	NaN	1	0	Median	1.1675	1.0986	NaN	1	1	Median	1.2791	1.2693	NaN	1	0	Median	288230000	149410000	138820000	93576000	48564000	45012000	80358000	47718000	32640000	37715000	16382000	21333000	76576000	36745000	39831000	57461	1586	54126	349778;349779;349780;349781	471941;471942;471943;471944	471944			4	
VWIKPGAEQSFLYGNHVLK	2	Unmodified	2185.1684	0.16840932	5484	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			6							5	1			74.594	73.137	3;4	5.5864E-05	60930	160511_QHF_FH_JSI10i_3	62.94	53.283			0.74367	0.76476	21.929	5	3	Median	0.83756	0.67858	24.192	4	3	Median	0.72206	0.82803	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	343270000	176360000	166920000	216590000	102020000	114570000	126680000	74334000	52350000	0	0	0	0	0	0	57462	5484	54127	349782;349783;349784;349785;349786;349787	471945;471946;471947;471948;471949;471950	471945			6	
VWIMQNETGISHDAIAQESK	1	Unmodified	2256.0845	0.084481271	3425	Q8IWR0	ZC3H7A	Zinc finger CCCH domain-containing protein 7A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	62.335	62.195	3	2.8289E-10	55250	160511_QHF_FH_JSI11i_3	118.52	96.089			0.99634	0.97287	8.3725	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98565	0.91695	NaN	1	0	Median	1.0072	1.0322	NaN	1	0	Median	177410000	89461000	87949000	0	0	0	0	0	0	102270000	53355000	48910000	75145000	36106000	39039000	57463	3425	54128	349788;349789	471951;471952;471953;471954;471955	471952			5	
VWINTSDIILVGLR	0	Unmodified	1597.9192	0.91917749	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		4							8	3	3	3	3	96.077	90.473	2;3	3.1753E-45	49700	160513_QHF_FH_JSI10Kac_6	191.52	159.51			1.0077	0.98852	17.39	12	1	Median	1.1614	0.98369	12.721	3	0	Median	0.70865	0.83902	4.5743	3	1	Plateau	1.1625	1.1108	19.374	3	0	Median	0.98723	1.0434	7.5501	3	0	Median	4710400000	2491900000	2218500000	850550000	377360000	473190000	1739100000	1065100000	673940000	1401300000	666050000	735200000	719570000	383400000	336170000	57464	1608	54129	349790;349791;349792;349793;349794;349795;349796;349797;349798;349799;349800;349801	471956;471957;471958;471959;471960;471961;471962;471963;471964;471965;471966;471967;471968;471969	471968			14	
VWINTSDIILVGLRDYQDNK	1	Unmodified	2361.2329	0.23286007	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	91.663	84.081	3	0.00039911	48526	160513_QHF_FH_JSI10Kac_6	80.236	59.422			1.015	1.1333	1.0454	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94778	1.125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0869	1.1418	NaN	1	1	Median	262760000	147900000	114860000	0	0	0	137040000	77784000	59258000	0	0	0	125710000	70113000	55601000	57465	1608	54130	349802;349803	471970;471971	471971			2	
VWIPDDLRK	1	Unmodified	1140.6291	0.62914348	395	O43933	PEX1	Peroxisome biogenesis factor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	52.187	52.069	3	0.0015159	44675	160511_QHF_FH_JSI12i_3	53.089	38.882			0.61462	0.59824	16.061	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55893	0.53402	NaN	1	0	Median	0.67586	0.67019	NaN	1	0	Median	72881000	43555000	29326000	0	0	0	0	0	0	29807000	20077000	9729800	43075000	23479000	19596000	57466	395	54131	349804;349805	471972;471973	471973			2	
VWIPDPEEVWK	1	Unmodified	1396.7027	0.70270235	4932;5631	Q9NQX4;Q9Y4I1	MYO5C;MYO5A	Unconventional myosin-Vc;Unconventional myosin-Va	no	no	0	0	0	0				By MS/MS	2	0		1											1	93.262	92.504	2	0.0093558	79820	160511_QHF_FH_JSI12i_2	48.796	20.398			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57467	4932;5631	54132	349806	471974	471974			1	
VWISFAQFELSSGK	1	Unmodified	1597.814	0.81404372	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	89.778	81.653	2	6.2474E-05	43575	160513_QHF_FH_JSI12Kac_6	142.08	104.97			1.3469	1.2854	39.355	4	4	Median	1.151	0.98003	30.446	2	2	Median	1.7806	2.0584	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2653	1.3594	NaN	1	1	Median	214190000	95672000	118520000	81772000	37253000	44518000	108950000	48657000	60294000	0	0	0	23467000	9761800	13705000	57468	4566	54133	349807;349808;349809;349810	471975;471976;471977;471978	471977			4	
VWITNGGLANIFTVFAK	1	Unmodified	1850.0091	0.0090551289	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.35	6.4			10						7	3	5	4	5	100.57	96.431	2;3	1.8901E-167	51045	160513_QHF_FH_JSI9Kac_6	294.85	264.92			0.96522	0.96698	14.162	15	4	Median	1.1259	0.96251	19.319	2	0	Median	0.85671	0.99345	8.7849	4	2	Median	0.89365	0.83149	5.4295	4	0	Median	1.0247	1.0332	16.453	5	2	Median	1954700000	996860000	957790000	534090000	276620000	257470000	210560000	118470000	92092000	462490000	242670000	219820000	747510000	359100000	388410000	57469	4777	54134	349811;349812;349813;349814;349815;349816;349817;349818;349819;349820;349821;349822;349823;349824;349825;349826;349827	471979;471980;471981;471982;471983;471984;471985;471986;471987;471988;471989;471990;471991;471992;471993;471994;471995	471988			17	
VWLDPNETNEIANANSR	0	Unmodified	1941.9181	0.91806787	2129	P84098	RPL19	60S ribosomal protein L19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.36	4.12	8	9	5				2	1		6	6	5	8	64.836	62.779	2;3	4.0888E-159	57013	160511_QHF_FH_JSI10i_1	295.78	282.38			1.0783	1.0642	16.914	23	4	Median	1.3061	1.0518	5.2468	5	1	Median	0.99683	1.1583	22.878	6	1	Median	1.0681	1.0797	6.903	5	1	Median	0.9942	1.0569	18.504	7	1	Median	11857000000	5594000000	6263300000	2221300000	1002500000	1218800000	2689500000	1416200000	1273300000	3863300000	1708500000	2154800000	3083200000	1466800000	1616400000	57470	2129	54135	349828;349829;349830;349831;349832;349833;349834;349835;349836;349837;349838;349839;349840;349841;349842;349843;349844;349845;349846;349847;349848;349849;349850;349851;349852	471996;471997;471998;471999;472000;472001;472002;472003;472004;472005;472006;472007;472008;472009;472010;472011;472012;472013;472014;472015;472016;472017;472018;472019;472020;472021;472022;472023;472024;472025;472026;472027;472028;472029;472030;472031;472032;472033;472034;472035;472036;472037;472038;472039;472040;472041;472042;472043;472044;472045;472046;472047;472048	472017			53	
VWLEVEPVGMLK	1	Unmodified	1398.7581	0.75810874	1554	P43121	MCAM	Cell surface glycoprotein MUC18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	92.495	92	2	4.199E-06	80799	160511_QHF_FH_JSI11i_2	123.86	91.531			0.88641	0.90356	6.0161	4	0	Median	0.99829	0.83723	NaN	1	0	Median	0.72482	0.88771	NaN	1	0	Median	0.91652	0.91969	NaN	1	0	Median	0.85728	0.96583	NaN	1	0	Median	420960000	213530000	207440000	74761000	33635000	41126000	114620000	58438000	56179000	118910000	62421000	56486000	112680000	59034000	53644000	57471	1554	54136	349853;349854;349855;349856	472049;472050;472051;472052;472053;472054;472055;472056;472057;472058	472055			10	
VWLFETNPR	0	Unmodified	1160.5978	0.59784335	3089	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	68.152	67.256	2	0.0036856	58036	160511_QHF_FH_JSI12i_3	59.245	48.535			1.0593	1.1682	11.442	6	0	Median	1.6021	1.4008	NaN	1	0	Median	1.0503	1.2503	6.9319	2	0	Median	1.056	1.0411	NaN	1	0	Median	1.0484	1.1112	4.401	2	0	Median	456300000	206550000	249750000	57608000	23981000	33628000	137560000	69199000	68361000	64237000	29930000	34307000	196900000	83438000	113460000	57472	3089	54137	349857;349858;349859;349860;349861;349862	472059;472060;472061;472062;472063;472064;472065	472065			7	
VWLGIMLPVLGIK	1	Unmodified	1437.8782	0.8781643	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			6						9	1	4	6	4	100.2	94.797	2;3	8.1287E-31	89655	160511_QHF_FH_JSI12i_3	164.57	149.42			1.1167	1.1058	12.15	8	8	Median	1.2983	1.1161	NaN	1	1	Median	0.85378	1.0026	25.95	2	2	Median	1.1631	1.1027	2.3626	3	3	Median	1.0218	1.0718	15.358	2	2	Median	2520000000	1275800000	1244200000	557660000	250450000	307210000	688070000	405260000	282810000	705900000	328650000	377250000	568350000	291420000	276940000	57473	3074	54138	349863;349864;349865;349866;349867;349868;349869;349870;349871;349872;349873;349874;349875;349876;349877	472066;472067;472068;472069;472070;472071;472072;472073;472074;472075;472076;472077;472078;472079;472080	472076			15	
VWLGIMLPVLGIK	1	Oxidation (M)	1453.8731	0.87307892	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	1	2	2	96.855	88.446	2	7.7282E-13	52650	160513_QHF_FH_JSI10Kac_6	130.96	116.27			0.93077	0.92435	10.997	4	3	Median	0.98468	0.84579	NaN	1	1	Median	0.76251	0.91415	NaN	1	0	Median	1.1739	1.0989	NaN	1	1	Median	0.87982	0.93466	NaN	1	1	Median	511110000	264010000	247090000	105670000	51277000	54389000	123280000	79456000	43824000	180250000	75099000	105150000	101910000	58182000	43726000	57474	3074	54138	349878;349879;349880;349881;349882;349883	472081;472082;472083;472084;472085;472086;472087	472086		2189	7	
VWLLFDYAEHDLWHIIK	1	Unmodified	2197.136	0.13604656	1651	P49336;Q9BWU1	CDK8;CDK19	Cyclin-dependent kinase 8;Cyclin-dependent kinase 19	yes	no	0	0	0	0		By MS/MS			16	0									1		1			96.644	90.924	4	6.3171E-17	52733	160513_QHF_FH_JSI10Kac_6	136.01	114.03			0.72791	0.85203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72791	0.85203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87726000	40363000	47363000	0	0	0	87726000	40363000	47363000	0	0	0	0	0	0	57475	1651	54139	349884	472088	472088			1	
VWLYHDGR	0	Unmodified	1044.5141	0.51411372	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	1	3	3	35.711	30.624	3	0.015264	16791	160513_QHF_FH_JSI9Kac_6	40.352	23.812			1.2093	1.1732	17.339	9	0	Median	1.3727	1.1724	19.51	2	0	Median	0.84082	1.0175	NaN	1	0	Median	1.3743	1.3249	17.218	3	0	Median	1.3637	1.365	18.735	3	0	Plateau	269760000	116770000	152990000	8991900	3556400	5435500	20730000	11945000	8784800	92669000	37867000	54803000	147360000	63398000	83966000	57476	1704	54140	349885;349886;349887;349888;349889;349890;349891;349892;349893	472089;472090;472091;472092;472093;472094;472095;472096	472091			7	
VWNDLRPK	1	Unmodified	1026.5611	0.56106391	5686	Q9Y5X2	SNX8	Sorting nexin-8	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.194	24.84	3	0.0086376	20128	160511_QHF_FH_JSI9i_3	44.753	28.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57477	5686	54141	349894	472097	472097			1	
VWNLANCK	1	Unmodified	1003.4909	0.49093544	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	3.92	3	4	4						1	2	4	2	4	36.389	34.929	2	0.00027729	29032	160511_QHF_FH_JSI10i_3	114.02	84.685			0.98708	1.0289	41.838	12	4	Median	1.2806	1.0692	16.799	2	1	Median	0.83762	1.0002	24.593	4	2	Median	0.80514	0.76839	5.5821	2	1	Median	1.5968	1.6266	62.708	4	0	Median	4597400000	1961900000	2635500000	315030000	122670000	192350000	943270000	434140000	509130000	1118700000	552670000	566030000	2220400000	852380000	1368000000	57478	2061	54142	349895;349896;349897;349898;349899;349900;349901;349902;349903;349904;349905;349906	472098;472099;472100;472101;472102;472103;472104;472105;472106;472107;472108;472109;472110;472111;472112;472113;472114;472115;472116;472117;472118;472119;472120;472121	472107			24	
VWNLANCKLK	2	Acetyl (K)	1286.6805	0.68052712	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.5	0.5								3	3		2	2	2	69.186	59.29	2	7.754E-12	31972	160513_QHF_FH_JSI11Kac_6	152.59	121.22			0.82801	0.90962	76.835	5	0	Median	NaN	NaN	NaN	0	0	Median	0.93636	1.0932	14.885	2	0	Median	0.26367	0.2595	20.453	2	0	Median	0.82801	0.90962	NaN	1	0	Median	134140000	105620000	28523000	0	0	0	24185000	11765000	12420000	98784000	83255000	15529000	11172000	10598000	574310	57479	2061	54143	349907;349908;349909;349910;349911;349912	472122;472123;472124	472122	2131		3	
VWNLVTGQEIMSLGGHPNNVVSVK	1	Unmodified	2577.3373	0.33734191	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	2	1	92.461	92.232	3	5.6002E-13	79947	160511_QHF_FH_JSI12i_3	104.38	97.352			0.91507	0.76055	26.18	4	0	Linear	NaN	NaN	NaN	0	0	Median	0.64396	0.78309	NaN	1	0	Median	0.61796	0.59358	30.924	2	0	Median	0.85194	0.86141	NaN	1	0	Median	366820000	220850000	145970000	0	0	0	43481000	26934000	16547000	126640000	78664000	47979000	196700000	115250000	81447000	57480	3276	54144	349913;349914;349915;349916	472125;472126;472127	472127			3	
VWNMDTFMPVGEMK	1	Unmodified	1683.7459	0.74590585	3276	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	94.147	93.477	2	0.0053377	80734	160511_QHF_FH_JSI12i_2	53.569	44.839			1.6431	1.8353	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6431	1.8353	NaN	1	1	Median	8968600	2222700	6746000	0	0	0	0	0	0	0	0	0	8968600	2222700	6746000	57481	3276	54145	349917;349918	472128;472129	472129			2	
VWNTLSIK	1	Unmodified	959.54402	0.54401687	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	50.646	49.814	2	0.020585	42838	160511_QHF_FH_JSI12i_2	45.68	18.718			0.86652	0.86866	16.941	5	0	Median	0.96791	0.81687	NaN	1	0	Median	0.75124	0.93065	NaN	1	0	Median	0.86652	0.86866	NaN	1	0	Median	0.91209	1.0111	28.197	2	0	Median	416060000	228950000	187110000	70293000	30626000	39667000	87232000	44344000	42887000	107750000	65190000	42564000	150780000	88791000	61990000	57482	3736	54146	349919;349920;349921;349922;349923	472130;472131;472132;472133;472134	472131			5	
VWPHLALR	0	Unmodified	990.57632	0.57632005	4015	Q96CU9	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			57.73	56.189	3	0.016201	47017	160511_QHF_FH_JSI10i_3	35.295	19.633			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57483	4015	54147	349924	472135	472135			1	
VWPNVEADGSEPTK	1	Unmodified	1527.7205	0.72053726	3636	Q8NEB9	PIK3C3	Phosphatidylinositol 3-kinase catalytic subunit type 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	47.668	47.131	2	0.018417	42566	160511_QHF_FH_JSI11i_1	50.354	34.782			0.51733	0.52998	8.2089	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.57477	0.56165	NaN	1	1	Median	0.46562	0.50009	NaN	1	1	Median	98926000	64171000	34755000	0	0	0	0	0	0	55195000	35373000	19822000	43731000	28798000	14933000	57484	3636	54148	349925;349926	472136;472137	472136			2	
VWPPGAQEPCTVRPAQVEPLLR	0	Unmodified	2499.3056	0.30564786	3167	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				75.533	74.078	3	0.020757	60920	160511_QHF_FH_JSI9i_3	29.444	21.822			1.2548	1.0527	NaN	1	1	Median	1.2548	1.0527	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15072000	5597700	9474600	15072000	5597700	9474600	0	0	0	0	0	0	0	0	0	57485	3167	54149	349927;349928	472138;472139	472139			2	
VWQCGGSLEIIPCSR	0	Unmodified	1760.8338	0.83380965	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3								1	3	3	70.251	69.651	2	2.2411E-11	61009	160511_QHF_FH_JSI11i_2	103.35	90.148			1.2961	1.3744	21.496	5	1	Median	NaN	NaN	NaN	0	0	Median	1.2967	1.599	NaN	1	0	Median	1.0362	1.0173	11.358	2	0	Median	1.351	1.4025	2.8571	2	1	Median	110670000	49490000	61177000	0	0	0	19069000	8138600	10930000	45183000	21657000	23526000	46415000	19694000	26720000	57486	2294	54150	349929;349930;349931;349932;349933;349934;349935	472140;472141;472142;472143;472144;472145;472146;472147;472148;472149	472144			10	
VWQLGSSSPNFTLEGHEK	1	Unmodified	2014.9749	0.97485447	1438	P35606	COPB2	Coatomer subunit beta'	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.13	6.28		3	7						5	4	4	4	3	68.164	64.77	2;3	7.5525E-67	54332	160511_QHF_FH_JSI10i_3	231.86	222.28			0.95937	0.99003	19.57	15	4	Median	1.2333	1.0487	15.65	4	3	Median	0.93623	1.0891	27.1	4	0	Median	0.81486	0.77081	16.595	4	1	Linear	0.903	0.92977	3.958	3	0	Median	5042300000	2539400000	2502900000	622410000	267220000	355180000	1322600000	687060000	635560000	1910100000	938960000	971110000	1187200000	646150000	541070000	57487	1438	54151	349936;349937;349938;349939;349940;349941;349942;349943;349944;349945;349946;349947;349948;349949;349950	472150;472151;472152;472153;472154;472155;472156;472157;472158;472159;472160;472161;472162;472163;472164;472165;472166;472167;472168;472169;472170;472171;472172;472173	472155			24	
VWQLQDLSFQTAAR	0	Unmodified	1661.8526	0.85255449	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							2	2	2	2	83.477	82.953	2	0.00025397	71898	160511_QHF_FH_JSI12i_3	104.79	79.94			0.94752	0.87925	83.832	6	6	Median	0.91615	0.77968	NaN	1	1	Median	0.68874	0.85019	NaN	1	1	Median	0.98673	0.94313	5.167	2	2	Median	0.3405	0.37233	158.4	2	2	Median	620290000	409940000	210350000	81643000	38148000	43495000	70515000	40426000	30089000	152330000	83479000	68856000	315800000	247890000	67911000	57488	5135	54152	349951;349952;349953;349954;349955;349956;349957;349958	472174;472175;472176;472177;472178;472179;472180;472181	472181			8	
VWQVTIGTR	0	Unmodified	1058.5873	0.58727866	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.83	6.58		4	4					3	7	4	6	3	5	56.655	50.916	2	5.8767E-08	27021	160513_QHF_FH_JSI9Kac_6	145.63	75.366			0.97197	1.048	10.689	18	4	Median	1.2989	1.0757	12.123	4	0	Median	0.90877	1.0568	7.0507	6	2	Median	1.1401	1.088	13.105	3	0	Plateau	0.96758	1.0181	13.161	5	2	Median	26116000000	12826000000	13290000000	3770500000	1546700000	2223800000	12896000000	6286200000	6609800000	4622400000	2412500000	2209900000	4827400000	2581000000	2246400000	57489	2061	54153	349959;349960;349961;349962;349963;349964;349965;349966;349967;349968;349969;349970;349971;349972;349973;349974;349975;349976	472182;472183;472184;472185;472186;472187;472188;472189;472190;472191;472192;472193;472194;472195;472196;472197;472198;472199;472200;472201;472202;472203;472204;472205;472206;472207;472208;472209;472210;472211;472212;472213;472214;472215;472216;472217	472205			36	
VWQYITLMR	0	Unmodified	1208.6376	0.63759967	2471	Q13823	GNL2	Nucleolar GTP-binding protein 2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			78.813	73.065	2	1.9365E-05	39922	160513_QHF_FH_JSI10Kac_6	128.69	85.44			1.0494	1.2489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0494	1.2489	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	327620000	186810000	140810000	0	0	0	327620000	186810000	140810000	0	0	0	0	0	0	57490	2471	54154	349977	472218	472218			1	
VWSEVNQAVLDYENR	0	Unmodified	1820.8693	0.86932676	5073	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	70.222	69.328	2;3	0.00011036	61024	160511_QHF_FH_JSI9i_2	100.55	81.808			0.85885	0.87498	20.847	7	2	Median	0.99292	0.851	NaN	1	0	Median	0.74186	0.90831	13.297	2	2	Median	1.035	1.0633	27.561	2	0	Median	0.88069	0.96621	35.432	2	0	Median	197450000	112290000	85163000	20979000	11782000	9196800	48386000	29136000	19250000	75991000	40429000	35562000	52099000	30944000	21155000	57491	5073	54155	349978;349979;349980;349981;349982;349983;349984	472219;472220;472221;472222;472223;472224;472225;472226;472227	472222			8	
VWSEVNQAVLDYENRESTPK	1	Unmodified	2363.1394	0.13935361	5073	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	65.902	65.755	3	0.0012114	58461	160511_QHF_FH_JSI11i_3	45.704	36.885			1.6228	1.5702	31.914	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3588	1.253	NaN	1	0	Median	1.938	1.9677	NaN	1	0	Median	64148000	21979000	42169000	0	0	0	0	0	0	35267000	11518000	23749000	28881000	10462000	18420000	57492	5073	54156	349985;349986	472228;472229;472230;472231;472232	472228			5	
VWSPLVTEEGK	1	Unmodified	1243.6449	0.64485312	98	O00151	PDLIM1	PDZ and LIM domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	1	2		55.945	55.231	2	5.7198E-05	47708	160511_QHF_FH_JSI11i_2	94.309	82.716			1.2384	1.1759	19.059	4	0	Median	1.2296	1.0524	NaN	1	0	Median	0.88283	1.084	NaN	1	0	Median	1.4325	1.4262	15.785	2	0	Median	NaN	NaN	NaN	0	0	Median	2033200000	959410000	1073800000	454610000	187880000	266730000	478220000	283220000	195010000	1100300000	488310000	612040000	0	0	0	57493	98	54157	349987;349988;349989;349990	472233;472234;472235;472236	472234			4	
VWSRNEDITEPQSILAAAEK	1	Unmodified	2256.1386	0.13862533	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			74.375	72.916	3	3.3123E-05	60937	160511_QHF_FH_JSI10i_3	66.325	51.853			1.0997	1.239	17.887	3	1	Plateau	1.4981	1.227	25.283	2	1	Median	1.0841	1.239	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114540000	49483000	65054000	66814000	27025000	39788000	47724000	22458000	25266000	0	0	0	0	0	0	57494	5526	54158	349991;349992;349993	472237;472238;472239	472237			3	
VWVQAFK	1	Unmodified	876.48577	0.48577371	996	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	3	2	3	1	52.195	49.441	2	0.0091535	42094	160511_QHF_FH_JSI12i_3	80.377	54.268			0.88147	0.75311	33.644	9	3	Median	0.88147	0.75311	9.4692	3	1	Median	0.81137	0.9478	39.161	2	1	Median	0.95245	0.92025	37.359	3	1	Plateau	1.3374	1.3342	NaN	1	0	Median	2909100000	1587900000	1321200000	479350000	241950000	237400000	613590000	363600000	249990000	946240000	495180000	451060000	869890000	487130000	382770000	57495	996	54159	349994;349995;349996;349997;349998;349999;350000;350001;350002	472240;472241;472242;472243;472244;472245;472246;472247;472248	472247			9	
VWVVATK	1	Unmodified	801.47487	0.47487467	1553	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	46.519	36.881	2	0.027473	20055	160513_QHF_FH_JSI11Kac_6	63.306	45.458			0.91217	0.91858	10.318	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.052	0.98811	NaN	1	0	Median	0.79092	0.85395	NaN	1	0	Median	164670000	84233000	80439000	0	0	0	0	0	0	139930000	70054000	69872000	24746000	14179000	10567000	57496	1553	54160	350003;350004	472249	472249			1	
VWWYRPFQYFEK	1	Unmodified	1747.8511	0.85109792	3349	Q86VZ5	SGMS1	Phosphatidylcholine:ceramide cholinephosphotransferase 1	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.824	78.198	3	0.0037791	43537	160513_QHF_FH_JSI10Kac_6	52.495	40.291			0.85515	0.99092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.85515	0.99092	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	191770000	101310000	90454000	0	0	0	191770000	101310000	90454000	0	0	0	0	0	0	57497	3349	54161	350005	472250	472250			1	
VWYEWAVTAPVCSAIHNPTGR	0	Unmodified	2413.1637	0.16373465	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	84.652	79.761	3	2.8325E-37	40835	160513_QHF_FH_JSI11Kac_6	166.25	160.29			1.1915	1.2607	19.737	7	0	Median	1.4594	1.2607	NaN	1	0	Median	1.3251	1.5216	15.413	2	0	Median	1.0191	0.98381	0.80675	2	0	Median	1.2564	1.3015	12.078	2	0	Median	556930000	258190000	298750000	68543000	24250000	44293000	180970000	92782000	88184000	127920000	65556000	62361000	179510000	75598000	103910000	57498	197	54162	350006;350007;350008;350009;350010;350011;350012	472251;472252;472253;472254;472255;472256;472257;472258;472259;472260	472255			10	
VWYHVCSSR	0	Unmodified	1192.5448	0.54476192	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									14	3	5	2	4	33.612	24.839	3	0.0010456	13774	160513_QHF_FH_JSI10Kac_6	63.426	54.472			1.0437	1.142	39.711	13	0	Median	1.4944	1.281	11.512	2	0	Median	0.88698	1.0154	61.238	5	0	Median	1.0016	0.95969	4.3721	2	0	Median	1.0936	1.1915	7.65	4	0	Median	274790000	137910000	136880000	17657000	5900000	11757000	195860000	102090000	93771000	26813000	14994000	11819000	34458000	14927000	19531000	57499	3828	54163	350013;350014;350015;350016;350017;350018;350019;350020;350021;350022;350023;350024;350025;350026	472261;472262;472263;472264;472265;472266;472267;472268;472269;472270	472266			6	
VWYVSNIDGTHIAK	1	Unmodified	1601.8202	0.82019173	856	P06744	GPI	Glucose-6-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.46	6.73	2	13	7					6	13	11	10	11	9	62.865	57.968	2;3	3.9277E-56	30493	160513_QHF_FH_JSI9Kac_6	170.79	141.25			0.97139	0.94182	23.259	41	9	Median	1.1044	0.8964	15.154	11	2	Median	0.75602	0.92978	21.231	10	3	Median	0.97963	0.94182	13.141	11	2	Median	0.89757	0.94317	40.828	9	2	Median	39597000000	19333000000	20265000000	5578500000	2440700000	3137900000	8410300000	4601900000	3808300000	14562000000	7032300000	7529500000	11047000000	5257600000	5789100000	57500	856	54164	350027;350028;350029;350030;350031;350032;350033;350034;350035;350036;350037;350038;350039;350040;350041;350042;350043;350044;350045;350046;350047;350048;350049;350050;350051;350052;350053;350054;350055;350056;350057;350058;350059;350060;350061;350062;350063;350064;350065;350066;350067	472271;472272;472273;472274;472275;472276;472277;472278;472279;472280;472281;472282;472283;472284;472285;472286;472287;472288;472289;472290;472291;472292;472293;472294;472295;472296;472297;472298;472299;472300;472301;472302;472303;472304;472305;472306;472307;472308;472309;472310;472311;472312;472313;472314;472315;472316;472317;472318;472319;472320;472321;472322;472323;472324;472325;472326;472327;472328;472329;472330;472331;472332;472333;472334;472335;472336;472337;472338;472339;472340;472341;472342;472343;472344;472345;472346;472347;472348;472349;472350;472351;472352;472353;472354;472355;472356;472357;472358;472359;472360	472342			89	
VYADASLVFPLLVAETFAQK	1	Unmodified	2181.1722	0.17215729	1654	P49366	DHPS	Deoxyhypusine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		5								1	1	2	1	103.39	103.3	2;3	1.7626E-54	91048	160511_QHF_FH_JSI11i_2	220.19	188.96			0.97542	0.96132	4.3396	5	0	Median	1.0949	0.95935	NaN	1	0	Median	0.85723	1.0161	NaN	1	0	Median	0.99238	0.96721	0.86263	2	0	Median	0.79636	0.90021	NaN	1	0	Median	95835000	47391000	48444000	18431000	11086000	7344400	15642000	7799900	7841900	50610000	22670000	27940000	11152000	5834300	5318000	57501	1654	54165	350068;350069;350070;350071;350072	472361;472362;472363;472364;472365	472364			3	
VYAENAIRK	1	Unmodified	1062.5822	0.58219329	4873	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		15.348	14.814	2;3	0.016044	12018	160511_QHF_FH_JSI10i_3	43.808	24.714			1.1319	1.3499	12.347	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1353	1.3454	0.47297	2	0	Median	1.1319	1.0865	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	165890000	71452000	94436000	0	0	0	111320000	45127000	66193000	54567000	26325000	28243000	0	0	0	57502	4873	54166	350073;350074;350075	472366;472367;472368	472367			3	
VYAFLHIPVQSASDSVLMEMK	1	Unmodified	2364.1858	0.18577522	2990	Q5VV42	CDKAL1	Threonylcarbamoyladenosine tRNA methylthiotransferase	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	100.82	100.83	3	1.128E-06	87449	160511_QHF_FH_JSI12i_3	76.704	61.935			1.0876	1.0492	31.641	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4207	1.3123	NaN	1	0	Median	0.83251	0.83885	NaN	1	0	Median	126620000	67487000	59132000	0	0	0	0	0	0	43894000	21423000	22471000	82725000	46063000	36662000	57503	2990	54167	350076;350077	472369	472369			1	
VYAHHAVSTLGISK	1	Unmodified	1481.7991	0.79906235	2820	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			2						2	1		2	1	33.858	29.204	3	0.001119	24756	160511_QHF_FH_JSI11i_3	54.402	48.679			1.022	1.0045	53.925	4	1	Median	3.2492	2.7642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.022	1.0045	2.935	2	1	Median	0.85064	0.85268	NaN	1	0	Median	170350000	72010000	98342000	14524000	3214400	11310000	0	0	0	66900000	35244000	31656000	88927000	33551000	55376000	57504	2820	54168	350078;350079;350080;350081	472370;472371;472372;472373;472374;472375	472371			6	
VYAILTHGIFSGPAISR	0	Unmodified	1800.9887	0.98865404	1920;1008	P60891;P21108;P11908	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									12	3	3	3	3	80.63	72.373	2;3	1.0931E-266	40527	160513_QHF_FH_JSI10Kac_6	354.38	300.81			1.1205	1.1474	24.394	12	8	Median	1.526	1.3281	23.681	3	2	Median	0.9415	1.1169	22.376	3	2	Median	1.8694	1.8258	37.21	3	2	Plateau	1.0563	1.1129	4.9177	3	2	Median	53689000000	24240000000	29449000000	9684200000	4434200000	5250000000	27225000000	12900000000	14325000000	9792800000	2748200000	7044700000	6987700000	4158100000	2829600000	57505	1920;1008	54169	350082;350083;350084;350085;350086;350087;350088;350089;350090;350091;350092;350093	472376;472377;472378;472379;472380;472381;472382;472383;472384;472385;472386;472387;472388;472389;472390;472391	472389			16	
VYALPEDLVEVK	1	Unmodified	1373.7442	0.74423282	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	79.626	79.154	2	0.0014328	72042	160511_QHF_FH_JSI11i_1	75.197	48.24			0.8627	0.86007	23.178	4	4	Median	0.74877	0.61725	NaN	1	1	Median	0.89273	1.0646	NaN	1	1	Median	0.83368	0.80395	NaN	1	1	Median	0.89387	0.92011	NaN	1	1	Median	177800000	93030000	84774000	33755000	17574000	16181000	43995000	23399000	20596000	48155000	26170000	21985000	51899000	25886000	26013000	57506	1039	54170	350094;350095;350096;350097	472392;472393;472394;472395	472392			4	
VYALPEDLVEVKPK	2	Unmodified	1598.892	0.89195969	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.48	5	5	4					4		3	5	5	5	73.291	70.089	2;3	3.3889E-05	61490	160511_QHF_FH_JSI12i_2	114.74	66.631			0.851	0.8836	13.665	16	5	Median	0.98372	0.80498	10.941	3	0	Median	0.77826	0.9158	6.3682	4	1	Median	0.93527	0.93785	10.944	4	1	Median	0.83913	0.83538	19.819	5	3	Median	6397700000	3416900000	2980800000	946410000	431700000	514710000	1635000000	974610000	660410000	2259900000	1196900000	1062900000	1556400000	813660000	742720000	57507	1039	54171	350098;350099;350100;350101;350102;350103;350104;350105;350106;350107;350108;350109;350110;350111;350112;350113;350114;350115	472396;472397;472398;472399;472400;472401;472402;472403;472404;472405;472406;472407;472408;472409;472410;472411;472412;472413;472414;472415;472416;472417;472418;472419;472420;472421;472422;472423;472424;472425;472426;472427;472428;472429	472403			34	
VYAPASTLVDQPYANEGTVVVTER	0	Unmodified	2578.2915	0.29149716	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	1	2	76.783	76.306	2;3	8.4549E-28	69575	160511_QHF_FH_JSI12i_1	178.03	160.82			1.1308	1.111	6.2341	4	0	Median	1.3277	1.1082	NaN	1	0	Median	0.85258	1.0137	NaN	1	0	Median	1.1338	1.1137	NaN	1	0	Median	1.1279	1.1788	NaN	1	0	Median	437520000	201700000	235820000	86426000	33904000	52522000	132820000	63179000	69639000	127940000	61779000	66162000	90339000	42839000	47499000	57508	2493	54172	350116;350117;350118;350119;350120;350121	472430;472431;472432;472433;472434;472435;472436;472437	472433			8	
VYASNQEFESVR	0	Unmodified	1427.6681	0.66810776	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		35.535	35.232	2	0.0025506	31615	160511_QHF_FH_JSI11i_1	56.725	45.895			1.0022	1.0847	2.0104	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91707	1.1002	NaN	1	0	Median	1.0952	1.0694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	182630000	94532000	88101000	0	0	0	78363000	38963000	39400000	104270000	55569000	48700000	0	0	0	57509	4152	54173	350122;350123	472438;472439	472438			2	
VYATILNAGTNTDGFK	1	Unmodified	1683.8468	0.84680041	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	6.04	2	4	2				1	3		3	5	2	2	68.901	65.334	2	8.1907E-43	34295	160513_QHF_FH_JSI11Kac_5	176.51	156.75			0.79083	0.86087	22.066	11	3	Median	1.0975	0.9352	10.826	3	0	Median	0.69995	0.85708	26.686	4	2	Median	0.83628	0.81653	7.4782	2	0	Median	0.64767	0.70275	36.066	2	1	Median	976390000	573500000	402900000	165570000	77964000	87611000	368440000	237200000	131240000	209520000	124440000	85079000	232860000	133890000	98968000	57510	1650	54174	350124;350125;350126;350127;350128;350129;350130;350131;350132;350133;350134;350135	472440;472441;472442;472443;472444;472445;472446;472447;472448;472449;472450;472451;472452;472453;472454;472455;472456;472457;472458	472454			19	
VYCHYFVK	1	Unmodified	1114.527	0.52698659	5074	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	37.965	28.862	3	0.011119	15172	160513_QHF_FH_JSI12Kac_6	41.029	32.448			1.0812	1.2037	20.081	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0052	1.2037	NaN	1	0	Median	1.0812	1.0563	NaN	1	0	Median	1.458	1.5667	NaN	1	0	Median	18547000	8712100	9834900	0	0	0	6550700	3324700	3226000	5967000	3084600	2882500	6029400	2302900	3726500	57511	5074	54175	350136;350137;350138	472459;472460;472461	472460			3	
VYDDAHNMLNTLISQK	1	Unmodified	1860.904	0.90399771	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0	By matching		By MS/MS		2	0		2								1		1		73.69	72.97	3	4.2316E-05	63945	160511_QHF_FH_JSI11i_2	78.95	63.696			1.1648	1.0687	16.89	2	0	Median	1.1213	0.94836	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.21	1.2042	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72112000	36042000	36070000	29260000	14568000	14692000	0	0	0	42853000	21474000	21378000	0	0	0	57512	4303	54176	350139;350140	472462;472463;472464	472463			3	
VYDEEVEEPVLK	1	Unmodified	1447.7082	0.70824124	3011	Q641Q2;Q9Y4E1	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	yes	no	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		50.016	49.599	2	0.0023289	44665	160511_QHF_FH_JSI10i_1	71.066	56.375			0.88252	0.94652	33.907	2	2	Median	NaN	NaN	NaN	0	0	Median	0.63243	0.74474	NaN	1	1	Median	1.2315	1.203	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	199060000	119270000	79793000	0	0	0	89188000	60423000	28765000	109870000	58846000	51028000	0	0	0	57513	3011	54177	350141;350142	472465;472466	472466			2	
VYDEVVDTSK	1	Unmodified	1153.5503	0.55028404	3335	Q86V21	AACS	Acetoacetyl-CoA synthetase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		26.301	26.062	2	0.0021511	22904	160511_QHF_FH_JSI11i_1	61.593	56.006			1.1816	1.2603	2.1317	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0861	1.2794	NaN	1	1	Median	1.2856	1.2414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	186700000	89943000	96755000	0	0	0	108870000	54793000	54078000	77827000	35150000	42678000	0	0	0	57514	3335	54178	350143;350144	472467;472468	472467			2	
VYDQMPEPR	0	Unmodified	1133.5175	0.51754412	495	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	29.093	28.375	2	0.00076946	25370	160511_QHF_FH_JSI12i_1	74.464	61.937			0.92427	0.97018	15.94	3	0	Plateau	1.5649	1.3027	NaN	1	0	Median	0.86931	1.0118	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92427	0.97018	NaN	1	0	Median	425640000	211520000	214120000	116700000	39298000	77404000	149000000	85714000	63282000	0	0	0	159940000	86510000	73433000	57515	495	54179	350145;350146;350147	472469;472470;472471	472469			3	
VYDQTNPYTDVR	0	Unmodified	1469.6787	0.67867245	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	33.784	33.202	2	0.0025	29914	160511_QHF_FH_JSI12i_1	56.783	40.892			1.0461	1.0934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0461	1.0934	NaN	1	0	Median	41086000	15834000	25252000	0	0	0	0	0	0	0	0	0	41086000	15834000	25252000	57516	5468	54180	350148	472472	472472			1	
VYDQVVEDLNSR	0	Unmodified	1435.6943	0.69432251	4887	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.74	48.061	2	3.977E-05	43378	160511_QHF_FH_JSI11i_1	112.13	93.345			0.77378	0.75683	2.5128	4	3	Median	0.90617	0.74719	NaN	1	1	Median	0.62413	0.73342	NaN	1	1	Median	0.79939	0.77546	NaN	1	1	Median	0.74899	0.76659	NaN	1	0	Median	598680000	339000000	259680000	156960000	80153000	76809000	146140000	102590000	43553000	167410000	91150000	76264000	128160000	65112000	63052000	57517	4887	54181	350149;350150;350151;350152	472473;472474;472475;472476	472473			4	
VYEAVELLK	1	Unmodified	1062.5961	0.59611202	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.83	0.373	1	5								1	2	1	2	61.403	60.512	2	0.0045868	52485	160511_QHF_FH_JSI11i_2	66.621	41.699			1.0456	1.0293	21.445	6	3	Median	1.2555	1.086	NaN	1	0	Median	0.71069	0.84532	0.32761	2	0	Median	1.2678	1.3049	NaN	1	1	Median	1.047	1.1682	25.489	2	2	Median	449670000	223790000	225880000	48971000	20559000	28412000	122220000	75090000	47135000	93612000	38881000	54730000	184860000	89259000	95606000	57518	3736	54182	350153;350154;350155;350156;350157;350158	472477;472478;472479;472480;472481	472480			5	
VYEDPALSAIFLHNNYNYILK	1	Unmodified	2496.2689	0.26891122	5465	Q9UPT5	EXOC7	Exocyst complex component 7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	12.5	6.06		1							3		2	1	1	90.625	82.45	3	3.2451E-13	47651	160513_QHF_FH_JSI10Kac_6	110.56	96.833			1.0761	1.1825	10.125	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0761	1.273	NaN	1	0	Median	1.1351	1.0984	NaN	1	0	Median	0.97345	1.0487	NaN	1	0	Median	175410000	84481000	90933000	0	0	0	78608000	33398000	45210000	67563000	34142000	33421000	29244000	16942000	12302000	57519	5465	54183	350159;350160;350161;350162	472482;472483;472484	472484			3	
VYEEVLSVTPNDGFAK	1	Unmodified	1766.8727	0.87268081	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	69.457	68.899	2;3	2.6291E-65	62353	160511_QHF_FH_JSI10i_1	229.54	204.11			1.1287	1.1346	12.657	8	0	Median	1.1281	0.93257	0.5557	2	0	Median	0.95914	1.1227	5.3342	2	0	Median	1.1871	1.1556	6.4183	2	0	Median	1.2569	1.2768	4.3802	2	0	Median	1041300000	452130000	589200000	225700000	94497000	131200000	283560000	119280000	164280000	285030000	135550000	149480000	247040000	102800000	144240000	57520	2307	54184	350163;350164;350165;350166;350167;350168;350169;350170	472485;472486;472487;472488;472489;472490;472491;472492;472493;472494;472495;472496;472497;472498;472499	472493			15	
VYEFLDK	1	Unmodified	912.45928	0.45928418	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.2	0.4	4	1								1	2	1	1	46.543	45.809	2	0.037218	41162	160511_QHF_FH_JSI11i_1	48.756	24.783			0.89399	0.98392	10.919	5	0	Median	0.94463	0.7709	NaN	1	0	Median	0.81669	0.98733	0.48936	2	0	Median	1.0153	0.99884	NaN	1	0	Median	0.89399	0.91576	NaN	1	0	Median	544220000	296630000	247590000	47981000	23635000	24346000	310110000	178630000	131480000	115990000	60047000	55945000	70136000	34318000	35818000	57521	313	54185	350171;350172;350173;350174;350175	472500;472501;472502	472500			3	
VYEGERPLTK	1	Unmodified	1190.6295	0.62953741	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.31		8	6					4	4	5	5	6	6	18.934	15.497	2;3	2.5738E-06	12627	160511_QHF_FH_JSI12i_3	113.22	81.285			0.99655	0.96607	11.642	22	0	Median	1.1606	0.99464	9.4372	5	0	Median	0.78975	0.94423	7.7138	5	0	Median	1.0257	1.0181	10.795	6	0	Median	0.94585	1.0429	16.396	6	0	Median	24240000000	12402000000	11838000000	2926600000	1162300000	1764200000	4364100000	2289900000	2074200000	9813900000	5080500000	4733400000	7135800000	3869700000	3266100000	57522	982	54186	350176;350177;350178;350179;350180;350181;350182;350183;350184;350185;350186;350187;350188;350189;350190;350191;350192;350193;350194;350195;350196;350197	472503;472504;472505;472506;472507;472508;472509;472510;472511;472512;472513;472514;472515;472516;472517;472518;472519;472520;472521;472522;472523;472524;472525;472526;472527;472528;472529;472530;472531;472532;472533;472534;472535;472536;472537;472538;472539;472540;472541;472542;472543;472544;472545;472546;472547;472548;472549;472550;472551	472548			49	
VYEGERPLTKDNHLLGTFDLTGIPPAPR	1	Acetyl (K)	3147.6353	0.63529807	982	P11021	HSPA5	78 kDa glucose-regulated protein	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		84.449	75.132	4	5.1982E-16	41531	160513_QHF_FH_JSI11Kac_6	144.49	128.84			0.073642	0.071996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.073642	0.071996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	90342000	87111000	3230800	0	0	0	0	0	0	90342000	87111000	3230800	0	0	0	57523	982	54187	350198	472552	472552	772		1	
VYEILPTFDVLHFK	1	Unmodified	1719.9236	0.92359416	4216	Q96RD7	PANX1	Pannexin-1	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	101.24	101.13	3	7.3256E-05	88827	160511_QHF_FH_JSI11i_2	65.472	56.188			1.0068	0.9664	44.214	2	0	Median	0.82125	0.70693	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2342	1.3211	NaN	1	0	Median	207140000	118980000	88164000	38462000	21265000	17197000	55790000	34658000	21132000	71150000	36888000	34261000	41738000	26164000	15574000	57524	4216	54188	350199;350200;350201;350202	472553	472553			1	
VYEIPGLEPITFAGK	1	Unmodified	1632.8763	0.87630962	4558	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	97.016	96.767	2	0.00010588	87894	160511_QHF_FH_JSI12i_1	102.4	78.015			0.89948	0.90744	12.538	6	1	Median	1.1072	0.9378	3.7682	2	1	Median	0.61458	0.70035	NaN	1	0	Median	0.9617	0.95245	NaN	1	0	Median	0.79538	0.84333	9.4763	2	0	Median	130710000	76354000	54352000	33382000	17123000	16259000	25448000	16755000	8692700	26620000	16894000	9726400	45255000	25581000	19674000	57525	4558	54189	350203;350204;350205;350206;350207;350208;350209	472554;472555;472556;472557;472558	472556			5	
VYEIQDIYENSWTK	1	Unmodified	1786.8414	0.84138068	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	9	8								4	3	5	5	79.131	78.499	2;3	1.6257E-06	71182	160511_QHF_FH_JSI10i_1	155.02	119.47			1.0185	1.043	15.348	16	5	Median	1.4177	1.1525	5.7855	3	0	Median	0.81627	0.96629	23.31	3	0	Plateau	0.9455	0.96059	7.2232	5	3	Median	0.97633	1.0437	13.256	5	2	Median	1024300000	502060000	522240000	137230000	56668000	80565000	207480000	106590000	100890000	393070000	186270000	206800000	286510000	152530000	133990000	57526	5494	54190	350210;350211;350212;350213;350214;350215;350216;350217;350218;350219;350220;350221;350222;350223;350224;350225;350226	472559;472560;472561;472562;472563;472564;472565;472566;472567;472568;472569;472570;472571;472572;472573;472574;472575;472576;472577;472578;472579;472580;472581;472582	472571			23	
VYELLGLLGEVHPSEMINNAENLFR	0	Unmodified	2856.448	0.44801458	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.93	89.851	3	1.165E-64	50736	160513_QHF_FH_JSI11Kac_6	197.12	188.24			1.1655	1.3443	36.092	3	0	Plateau	0.82561	0.6913	NaN	1	0	Median	1.1655	1.3864	NaN	1	0	Median	1.2304	1.1559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	967260000	443560000	523700000	199860000	90421000	109440000	406850000	187140000	219710000	360550000	166000000	194550000	0	0	0	57527	2094	54191	350227;350228;350229	472583;472584;472585;472586	472583			4	
VYELPFLVALDHRK	1	Unmodified	1698.9457	0.94572659	3618	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			6						3	2	3	3	1	87.382	84.39	3;4	2.6987E-05	76399	160511_QHF_FH_JSI12i_3	101.39	89.105			0.99439	0.92148	44.249	9	3	Median	1.7385	1.4776	60.689	2	0	Median	1.4185	1.4014	65.769	3	2	Plateau	0.99439	0.92148	4.7071	3	1	Median	0.79513	0.82345	NaN	1	0	Median	173490000	82964000	90528000	30214000	11710000	18504000	56361000	27261000	29100000	63967000	30660000	33307000	22951000	13334000	9617200	57528	3618	54192	350230;350231;350232;350233;350234;350235;350236;350237;350238	472587;472588;472589;472590;472591;472592;472593;472594;472595;472596;472597;472598	472597			11	
VYENVGLMQQQK	1	Unmodified	1435.7129	0.71294946	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	4										1	2	1	40.104	39.691	2;3	5.2591E-05	35604	160511_QHF_FH_JSI10i_1	109.42	88.549			0.67769	0.68004	43.606	4	2	Median	NaN	NaN	NaN	0	0	Median	0.35916	0.42129	NaN	1	1	Median	0.71508	0.69669	48.928	2	1	Median	0.91582	0.93818	NaN	1	0	Median	346570000	233370000	113200000	0	0	0	159030000	122690000	36340000	153880000	92873000	61008000	33663000	17807000	15855000	57529	2239	54193	350239;350240;350241;350242	472599;472600;472601	472601			3	
VYENYPTYDLTER	0	Unmodified	1661.7573	0.7573167	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	53.006	52.339	2	2.5448E-10	47401	160511_QHF_FH_JSI11i_1	147.72	130.48			0.93534	0.951	3.1024	4	0	Median	1.1841	0.96529	NaN	1	0	Median	0.78815	0.93693	NaN	1	0	Median	0.94359	0.93204	NaN	1	0	Median	0.92716	0.99687	NaN	1	0	Median	1513900000	716400000	797520000	274290000	103780000	170500000	440990000	221840000	219150000	408930000	184890000	224050000	389700000	205890000	183820000	57530	1444	54194	350243;350244;350245;350246	472602;472603;472604;472605;472606;472607;472608;472609;472610	472603			9	
VYENYPTYDLTERK	1	Unmodified	1789.8523	0.85227972	1444	P35659	DEK	Protein DEK	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.65	5.21	3	9	4					4		5	5	5	5	47.544	44.499	2;3	1.839E-06	38262	160511_QHF_FH_JSI11i_2	131.43	108.2			1.0963	1.0642	17.097	18	5	Median	1.2728	1.0368	28.771	4	2	Median	0.82335	0.98742	20.392	5	2	Median	1.1551	1.1634	12.066	4	1	Median	0.99482	1.1034	6.2938	5	0	Median	2504500000	1175000000	1329500000	344250000	145280000	198970000	635300000	332470000	302830000	735320000	302360000	432960000	789680000	394910000	394770000	57531	1444	54195	350247;350248;350249;350250;350251;350252;350253;350254;350255;350256;350257;350258;350259;350260;350261;350262;350263;350264;350265;350266	472611;472612;472613;472614;472615;472616;472617;472618;472619;472620;472621;472622;472623;472624;472625;472626;472627;472628;472629;472630;472631;472632;472633;472634;472635;472636;472637;472638;472639	472633			29	
VYETDNNIVVYK	1	Unmodified	1455.7246	0.72456001	2208	Q03393	PTS	6-pyruvoyl tetrahydrobiopterin synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		46.346	45.661	2	0.0028514	41077	160511_QHF_FH_JSI10i_1	68.657	49.877			0.24717	0.2431	28.399	3	3	Plateau	0.17461	0.14523	NaN	1	1	Median	0.19628	0.23115	NaN	1	1	Median	0.24717	0.2431	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	322590000	262040000	60553000	115920000	98671000	17251000	89778000	70623000	19154000	116890000	92745000	24147000	0	0	0	57532	2208	54196	350267;350268;350269	472640;472641;472642	472641			3	
VYEVATFYTMYNR	0	Unmodified	1655.7654	0.76537896	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.73		4							7	3	3	3	2	77.635	72.1	2;3	8.0629E-32	39371	160513_QHF_FH_JSI10Kac_6	182.28	168.62			1.1858	1.1951	14.918	11	0	Median	1.2197	1.0433	14.136	3	0	Plateau	0.79853	0.94182	21.536	3	0	Plateau	1.0673	1.0281	18.408	3	0	Plateau	1.019	1.118	9.4338	2	0	Median	1152200000	590410000	561810000	269540000	122600000	146940000	491600000	279600000	212000000	263320000	126860000	136460000	127750000	61342000	66412000	57533	1158	54197	350270;350271;350272;350273;350274;350275;350276;350277;350278;350279;350280	472643;472644;472645;472646;472647;472648;472649;472650;472651;472652;472653;472654;472655	472653			12	
VYEVATFYTMYNR	0	Oxidation (M)	1671.7603	0.76029359	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	73.353	64.641	2	2.2946E-12	34361	160513_QHF_FH_JSI9Kac_6	126.67	115.77			0.97016	0.99875	44.774	4	1	Median	1.3456	1.1429	NaN	1	0	Median	0.36662	0.44111	NaN	1	1	Median	0.89282	0.88046	NaN	1	0	Median	1.0542	1.1329	NaN	1	0	Median	78115000	46970000	31145000	18403000	10528000	7875000	20154000	14562000	5592600	16066000	10278000	5788200	23492000	11603000	11890000	57534	1158	54197	350281;350282;350283;350284	472656;472657;472658;472659;472660;472661	472658		790	6	
VYFASLLTVALHGK	1	Unmodified	1517.8606	0.86059998	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.814	81.52	3	9.2299E-38	46915	160513_QHF_FH_JSI10Kac_6	157.56	145.87			0.86494	0.91554	25.596	4	0	Median	0.67388	0.58586	NaN	1	0	Median	0.90867	1.0444	NaN	1	0	Median	0.99876	0.96083	NaN	1	0	Median	0.82331	0.87238	NaN	1	0	Median	287050000	140490000	146570000	67037000	36134000	30903000	82669000	39142000	43527000	106180000	50684000	55496000	31168000	14526000	16642000	57535	236	54198	350285;350286;350287;350288	472662;472663;472664;472665;472666;472667;472668;472669;472670	472669			9	
VYFGGFFIR	0	Unmodified	1104.5757	0.57565135	5029	Q9NVE7	PANK4	Pantothenate kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.483	77.233	2	0.00029463	43928	160513_QHF_FH_JSI10Kac_6	100.74	59.44			1.0394	1.0434	19.028	4	0	Median	1.7545	1.5226	NaN	1	0	Median	0.8774	1.0488	NaN	1	0	Median	1.0951	1.0357	NaN	1	0	Median	0.98653	1.0381	NaN	1	0	Median	1364900000	670440000	694470000	248010000	89939000	158070000	598720000	319280000	279440000	327430000	157170000	170260000	190760000	104050000	86707000	57536	5029	54199	350289;350290;350291;350292	472671;472672;472673;472674;472675;472676	472676			6	
VYFHTDAAQAVGK	1	Unmodified	1405.699	0.69901396	5712	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	4	4	3	37.269	36.742	2;3	1.3818E-07	31093	160511_QHF_FH_JSI12i_3	133.32	111.09			1.2151	1.1649	24.946	9	2	Median	1.213	1.059	7.635	2	0	Median	0.58809	0.71743	4.5498	2	2	Median	1.5028	1.3968	9.5388	3	0	Plateau	1.2034	1.227	5.6963	2	0	Median	1146300000	552020000	594310000	137250000	54683000	82568000	171220000	106510000	64717000	372060000	170180000	201890000	465790000	220650000	245140000	57537	5712	54200	350293;350294;350295;350296;350297;350298;350299;350300;350301;350302;350303;350304;350305	472677;472678;472679;472680;472681;472682;472683;472684;472685;472686;472687;472688;472689;472690;472691;472692;472693;472694	472691			18	
VYFKDTHPK	2	Acetyl (K)	1175.5975	0.597509	764	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3		2	2	1	34.308	25.113	3	0.0012815	14061	160513_QHF_FH_JSI11Kac_6	67.726	55.86			0.2684	0.25598	114.91	5	1	Median	NaN	NaN	NaN	0	0	Median	1.4732	1.7239	2.6237	2	0	Median	0.26396	0.25509	0.49088	2	0	Median	0.15061	0.15906	NaN	1	1	Median	102610000	77029000	25581000	0	0	0	18994000	8850400	10144000	76743000	62101000	14642000	6872200	6077300	794890	57538	764	54201	350306;350307;350308;350309;350310	472695;472696;472697;472698;472699;472700;472701	472696	374;375		7	
VYFLIYGGSTEEQR	0	Unmodified	1660.8097	0.80968662	3901	Q92889	ERCC4	DNA repair endonuclease XPF	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									6	2		2	2	78.495	69.433	2	4.5635E-11	37492	160513_QHF_FH_JSI9Kac_6	171.62	157.71			1.035	0.97585	12.296	5	5	Median	1.046	0.89677	11.952	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0336	0.99715	7.2484	2	2	Median	1.035	1.1465	NaN	1	1	Median	158540000	80277000	78268000	90352000	45864000	44488000	0	0	0	54102000	28534000	25568000	14090000	5877900	8212300	57539	3901	54202	350311;350312;350313;350314;350315;350316	472702;472703;472704;472705;472706;472707	472704			6	
VYFLPITPHYVTQVIR	0	Unmodified	1945.0826	0.082554423	1296	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	1	2	91.131	87.041	3	9.5975E-06	84971	160511_QHF_FH_JSI11i_3	96.993	88.174			1.0778	1.0289	7.0712	6	0	Median	1.1848	0.98567	4.1081	2	0	Median	0.88275	1.0547	NaN	1	0	Median	1.1096	1.0433	NaN	1	0	Median	0.97692	1.0067	13.872	2	0	Median	1615400000	805580000	809780000	445360000	200210000	245150000	644270000	345030000	299250000	74637000	33315000	41323000	451090000	227030000	224060000	57540	1296	54203	350317;350318;350319;350320;350321;350322	472708;472709;472710;472711;472712;472713;472714;472715;472716;472717;472718	472709			11	
VYFPEQIHDVVR	0	Unmodified	1500.7725	0.77251325	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	62.36	61.667	3	0.005138	53158	160511_QHF_FH_JSI12i_3	52.79	46.061			1.1585	1.2034	6.0459	3	1	Median	1.3069	1.0853	NaN	1	0	Median	0.99461	1.2066	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1585	1.2034	NaN	1	1	Median	149010000	69292000	79718000	35190000	17544000	17646000	73157000	33156000	40002000	0	0	0	40663000	18592000	22071000	57541	3122	54204	350323;350324;350325	472719;472720;472721	472721			3	
VYFPYLLISK	1	Unmodified	1241.706	0.70599682	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	96.763	93.919	2	0.00050101	86249	160511_QHF_FH_JSI12i_3	72.643	62.732			1.045	0.98899	12.799	12	0	Median	1.1864	1.0298	11.241	3	0	Median	0.79172	0.94048	23.678	3	0	Median	1.039	0.99725	1.9797	3	0	Plateau	1.0579	1.0856	13.341	3	0	Plateau	1652500000	795700000	856810000	358150000	146910000	211250000	465640000	246690000	218950000	405750000	205440000	200310000	422960000	196650000	226310000	57542	1307	54205	350326;350327;350328;350329;350330;350331;350332;350333;350334;350335;350336;350337	472722;472723;472724;472725;472726;472727;472728;472729;472730;472731;472732;472733;472734;472735;472736;472737;472738;472739;472740;472741;472742	472736			21	
VYFQSPPGAAGEGPGGADDEGPVRR	0	Unmodified	2485.1622	0.16221432	4004	Q96C90	PPP1R14B	Protein phosphatase 1 regulatory subunit 14B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			50.126	48.831	3	6.3599E-17	40040	160511_QHF_FH_JSI9i_3	122.77	122.77			1.1084	1.1621	6.0696	4	1	Linear	1.3823	1.1416	6.3498	2	0	Median	0.89732	1.0667	4.9192	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	663660000	302770000	360890000	404320000	164320000	240000000	259340000	138450000	120890000	0	0	0	0	0	0	57543	4004	54206	350338;350339;350340;350341	472743;472744;472745;472746;472747;472748;472749;472750;472751;472752	472748			10	
VYGAAIQFYEPYSR	0	Unmodified	1662.8042	0.80420731	3000	Q5VZ89	DENND4C	DENN domain-containing protein 4C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9	7		2							2	1		2	1	74.552	68.15	2	2.2053E-16	36619	160513_QHF_FH_JSI11Kac_6	151.15	130.86			1.4619	1.4066	15.748	3	2	Plateau	1.4466	1.1752	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4619	1.4108	NaN	1	0	Median	0.96116	1.0311	NaN	1	1	Median	46702000	20523000	26179000	15562000	6845600	8716300	0	0	0	16834000	8586800	8247000	14306000	5090300	9215800	57544	3000	54207	350342;350343;350344;350345	472753;472754;472755;472756;472757	472755			5	
VYGALMWALGK	1	Unmodified	1207.6424	0.6423507	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2		2	2	1	86.637	83.4	2	5.1095E-08	43522	160513_QHF_FH_JSI10Kac_6	119.27	107.43			0.81539	0.77088	66.593	5	1	Median	NaN	NaN	NaN	0	0	Median	0.52821	0.6069	92.488	2	1	Median	0.4844	0.45729	73.853	2	0	Median	0.95105	0.96479	NaN	1	0	Median	2272100000	1412000000	860130000	0	0	0	1033600000	630230000	403410000	1071600000	700100000	371450000	166890000	81623000	85264000	57545	5163	54208	350346;350347;350348;350349;350350	472758;472759;472760;472761;472762;472763;472764;472765;472766;472767	472767			10	
VYGALMWALGK	1	Oxidation (M)	1223.6373	0.63726532	5163	Q9NZN4	EHD2	EH domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.253	70.969	2	0.00093863	38153	160513_QHF_FH_JSI9Kac_6	79.713	14.247			0.88716	0.90528	61.476	4	1	Median	0.92671	0.79365	NaN	1	0	Median	0.84931	1.0067	NaN	1	0	Median	2.9595	2.9081	NaN	1	0	Median	0.75795	0.81405	NaN	1	1	Median	132810000	66916000	65894000	55386000	30606000	24780000	33899000	19263000	14636000	20218000	6771200	13447000	23307000	10275000	13031000	57546	5163	54208	350351;350352;350353;350354	472768;472769;472770;472771	472769		2595	4	
VYGALMWSLGK	1	Unmodified	1223.6373	0.63726532	4727;4664	Q9H4M9;Q9H223	EHD1;EHD4	EH domain-containing protein 1;EH domain-containing protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	81.371	76.244	2	5.6921E-10	39984	160513_QHF_FH_JSI11Kac_6	131.44	21.577			1.0643	1.0738	9.583	7	0	Median	1.1537	0.97772	13.252	2	0	Median	0.91716	1.0623	6.9622	2	0	Median	0.99283	0.95368	NaN	1	0	Median	1.0885	1.1394	0.52743	2	0	Median	2342300000	1105000000	1237300000	481660000	230770000	250890000	835600000	429760000	405840000	534250000	230400000	303850000	490800000	214060000	276750000	57547	4727;4664	54209	350355;350356;350357;350358;350359;350360;350361;350362	472772;472773;472774;472775;472776;472777;472778;472779;472780;472781;472782;472783;472784;472785;472786;472787	472776			16	
VYGALMWSLGK	1	Oxidation (M)	1239.6322	0.63217995	4727;4664	Q9H4M9;Q9H223	EHD1;EHD4	EH domain-containing protein 1;EH domain-containing protein 4	no	no	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	76.575	67.372	2	0.00030534	36162	160513_QHF_FH_JSI9Kac_6	88.136	76.5			0.89862	0.91498	16.801	4	2	Median	0.80834	0.69104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.02	0.9381	NaN	1	0	Median	0.89862	0.95446	9.502	2	2	Median	239090000	123090000	116000000	100380000	56954000	43422000	0	0	0	55676000	30082000	25594000	83034000	36051000	46983000	57548	4727;4664	54209	350363;350364;350365;350366	472788;472789;472790;472791;472792;472793	472790		2509	6	
VYGDENSDK	1	Unmodified	1025.4302	0.4301689	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			6.4554	6.2174	2	0.0042219	4157	160511_QHF_FH_JSI10i_1	67.897	50.512			1.4323	1.6744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4323	1.6744	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	91887000	41585000	50302000	0	0	0	91887000	41585000	50302000	0	0	0	0	0	0	57549	404	54210	350367	472794	472794			1	
VYGPGVAK	1	Unmodified	789.43849	0.43848916	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.38	4.06	2	4	1				1			2	2	3	1	17.778	16.286	2	0.01211	13578	160511_QHF_FH_JSI10i_1	53.554	39.141			1.0525	1.0567	10.17	8	0	Median	1.4932	1.2395	10.117	2	0	Median	0.84238	1.0285	5.3753	2	0	Median	1.0648	1.0537	0.57879	3	0	Median	0.85796	0.9568	NaN	1	0	Median	3797900000	1725600000	2072300000	695210000	296290000	398920000	1144900000	534730000	610170000	1436400000	574470000	861950000	521350000	320120000	201240000	57550	1192	54211	350368;350369;350370;350371;350372;350373;350374;350375	472795;472796;472797;472798;472799	472796			5	
VYGPGVAKTGLK	2	Acetyl (K)	1230.6972	0.69722304	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.881						1	1	4	1	1	1	2	3	55.358	45.066	2	0.0027465	24292	160513_QHF_FH_JSI11Kac_6	75.294	63.58			0.86511	0.94561	38.622	6	0	Median	1.4854	1.2783	NaN	1	0	Median	0.97247	1.1635	NaN	1	0	Median	0.43776	0.43126	NaN	1	0	Median	0.82878	0.91844	9.6689	3	0	Median	125390000	75785000	49602000	12583000	6148500	6434600	18877000	9930900	8946600	47899000	33896000	14002000	46028000	25809000	20218000	57551	1192	54212	350376;350377;350378;350379;350380;350381;350382	472800;472801;472802;472803;472804;472805;472806	472801	1062		7	
VYHNQYSTNSFALNK	1	Unmodified	1784.8482	0.84819739	2311	Q12830	BPTF	Nucleosome-remodeling factor subunit BPTF	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	38.482	37.555	3	2.4153E-05	32779	160511_QHF_FH_JSI11i_3	103.83	93.064			1.0483	0.97097	14.2	5	3	Median	1.0877	0.90609	NaN	1	1	Median	0.92906	1.0676	13.419	2	2	Median	1.1504	1.0858	NaN	1	0	Median	0.79126	0.82087	NaN	1	0	Median	161320000	87779000	73544000	13378000	9057900	4319700	47960000	25931000	22029000	60079000	28025000	32054000	39906000	24765000	15141000	57552	2311	54213	350383;350384;350385;350386;350387	472807;472808;472809;472810;472811;472812;472813	472807			7	
VYIASSSGSTAIK	1	Unmodified	1282.6769	0.67688153	511	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	4.28	2	7							1	3	3	2	2	34.366	33.557	2	2.7511E-05	29515	160511_QHF_FH_JSI10i_2	82.417	70.823			1.1279	1.101	32.076	7	3	Median	1.5143	1.3516	NaN	1	1	Median	1.0721	1.2783	33.489	2	1	Median	1.0312	1.0173	11.184	2	0	Median	0.88163	0.95693	59.564	2	1	Median	445560000	211150000	234420000	36176000	15452000	20724000	152980000	83059000	69923000	193020000	86143000	106880000	63382000	26493000	36889000	57553	511	54214	350388;350389;350390;350391;350392;350393;350394;350395;350396;350397	472814;472815;472816;472817;472818;472819;472820;472821;472822;472823;472824;472825;472826;472827	472826			14	
VYIDPFTYEDPNEAVREFAK	1	Unmodified	2402.143	0.14304201	1833	P54760;P54753	EPHB4;EPHB3	Ephrin type-B receptor 4;Ephrin type-B receptor 3	yes	no	0	0	0	1				By MS/MS	2	0		1											1	95.633	95.09	3	0.022004	81829	160511_QHF_FH_JSI12i_2	30.684	22.496			2.2107	2.4734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2107	2.4734	NaN	1	0	Median	9035700	3022000	6013700	0	0	0	0	0	0	0	0	0	9035700	3022000	6013700	57554	1833	54215	350398	472828	472828			1	
VYIDPLK	1	Unmodified	846.48511	0.485105	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.394	49.867	2	0.019031	42975	160511_QHF_FH_JSI11i_2	58.981	27.692			0.33477	0.34435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33477	0.34435	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	90682000	81052000	9629500	0	0	0	0	0	0	90682000	81052000	9629500	0	0	0	57555	140	54216	350399	472829	472829			1	
VYIGSFWSHPLLIPDNR	0	Unmodified	2013.0472	0.047231549	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	88.868	79.477	3	3.567E-05	44380	160513_QHF_FH_JSI11Kac_6	79.013	58.074			0.9535	0.95764	13.21	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0974	1.0514	NaN	1	0	Median	0.82843	0.87224	NaN	1	1	Median	193530000	107470000	86058000	0	0	0	0	0	0	125040000	67148000	57894000	68488000	40323000	28164000	57556	4727	54217	350400;350401	472830;472831;472832	472831			3	
VYIGSFWSHPLLIPDNRK	1	Unmodified	2141.1422	0.14219457	4727	Q9H4M9	EHD1	EH domain-containing protein 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	83.491	75.249	3;4	4.2214E-13	40849	160513_QHF_FH_JSI9Kac_6	132.5	117.58			0.81707	0.90653	33.515	8	4	Median	0.72714	0.61516	56.876	2	1	Median	0.73371	0.87518	12.076	2	1	Median	0.76857	0.73013	47.944	2	1	Median	0.87705	0.93558	6.5033	2	1	Median	4191600000	2264900000	1926700000	805200000	415780000	389420000	2274200000	1281300000	992850000	699140000	349930000	349210000	413080000	217830000	195240000	57557	4727	54218	350402;350403;350404;350405;350406;350407;350408;350409	472833;472834;472835;472836;472837;472838;472839;472840;472841;472842;472843;472844	472837			12	
VYINLDK	1	Unmodified	863.47527	0.4752686	514	O75380	NDUFS6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	41.981	41.234	2	0.024235	35325	160511_QHF_FH_JSI12i_2	58.167	16.865			1.0587	1.161	11.556	7	1	Median	1.4025	1.1831	NaN	1	0	Median	0.9899	1.2017	8.9378	2	0	Median	1.2167	1.2164	6.5843	2	0	Median	0.91081	0.98779	10.678	2	1	Median	620060000	288310000	331750000	72270000	26488000	45782000	165370000	77410000	87959000	217790000	101310000	116490000	164630000	83104000	81526000	57558	514	54219	350410;350411;350412;350413;350414;350415;350416	472845;472846	472845			2	
VYINYYDMNAANVGWNNSTFA	0	Unmodified	2426.0637	0.063745829	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	4.71	8								1	3	2	2	2	100.06	98.982	2;3	5.4679E-28	91582	160511_QHF_FH_JSI12i_1	178.84	174.29			1.1115	1.1045	7.1056	9	0	Median	1.3446	1.1417	4.4851	3	0	Median	0.86017	0.99939	11.704	2	0	Median	1.1224	1.0907	1.779	2	0	Median	1.0783	1.1444	2.9502	2	0	Median	6751700000	3301000000	3450700000	1468400000	627100000	841310000	2119400000	1140400000	979020000	1406700000	662150000	744550000	1757200000	871360000	885800000	57559	1048	54220	350417;350418;350419;350420;350421;350422;350423;350424;350425	472847;472848;472849;472850;472851;472852;472853;472854;472855;472856;472857	472850			11	
VYINYYDMNAANVGWNNSTFA	0	Oxidation (M)	2442.0587	0.058660451	1048	P14174	MIF	Macrophage migration inhibitory factor	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	92.787	92.572	2;3	5.2041E-05	84040	160511_QHF_FH_JSI11i_1	72.265	67.55			0.6658	0.71527	34.889	2	2	Median	NaN	NaN	NaN	0	0	Median	0.47746	0.55889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92844	0.9154	NaN	1	1	Median	64083000	42958000	21126000	0	0	0	51993000	35474000	16519000	0	0	0	12091000	7483800	4606700	57560	1048	54220	350426;350427;350428	472858;472859;472860	472858		668	3	
VYIPCIYVLNK	1	Unmodified	1380.7475	0.74754405	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	87.573	87.13	2	0.00013488	77689	160511_QHF_FH_JSI11i_3	98.392	89.07			0.88232	0.94366	30.022	5	2	Median	NaN	NaN	NaN	0	0	Median	0.75033	0.94366	NaN	1	1	Median	0.72975	0.69042	27.653	2	0	Median	1.0988	1.1408	16.978	2	1	Median	84137000	40234000	43903000	0	0	0	11396000	5476600	5919300	43319000	21143000	22176000	29422000	13614000	15808000	57561	5505	54221	350429;350430;350431;350432;350433	472861;472862;472863;472864;472865;472866;472867	472863			7	
VYISLLPLGDGLTLAFK	1	Unmodified	1819.0495	0.04952296	3346	Q86VU5	COMTD1	Catechol O-methyltransferase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	98.506	89.218	2	0.001519	51302	160513_QHF_FH_JSI9Kac_6	128.54	94.655			0.78214	0.73937	57.985	2	2	Median	1.3154	1.1141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46507	0.49067	NaN	1	1	Median	80482000	42365000	38117000	41632000	20085000	21547000	0	0	0	0	0	0	38850000	22280000	16570000	57562	3346	54222	350434;350435	472868;472869	472868			2	
VYISSPHSSPAHNK	1	Unmodified	1522.7528	0.75284044	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	3	0			3							1		1	1	13.135	12.835	4	0.0025417	9714	160511_QHF_FH_JSI12i_3	46.797	41.334			0.88829	0.87532	41.388	3	1	Plateau	0.52324	0.41904	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98112	0.91489	NaN	1	0	Median	0.76316	0.78553	NaN	1	0	Median	285710000	179330000	106380000	154020000	113180000	40844000	0	0	0	67172000	34590000	32582000	64515000	31559000	32956000	57563	4564	54223	350436;350437;350438	472870;472871;472872	472872			3	
VYISYLDSIHFFRPR	0	Unmodified	1911.9996	0.99955308	3886	Q92793	CREBBP	CREB-binding protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		82.964	75.122	4	6.7182E-17	42261	160513_QHF_FH_JSI10Kac_6	139.3	129.88			0.64614	0.71275	28.067	3	0	Plateau	0.94953	0.82614	NaN	1	0	Median	0.60739	0.71275	NaN	1	0	Median	1.2647	1.2266	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	269850000	151470000	118380000	75849000	34435000	41414000	172260000	109620000	62647000	21733000	7414600	14319000	0	0	0	57564	3886	54224	350439;350440;350441	472873;472874	472874			2	
VYISYLDSVHFFRPK	1	Unmodified	1869.9778	0.977755	2285	Q09472	EP300	Histone acetyltransferase p300	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.694	72.437	4	5.8156E-08	38132	160513_QHF_FH_JSI12Kac_6	116.84	107.09			0.99134	1.0212	6.6783	4	0	Median	1.0234	0.89852	NaN	1	0	Median	0.84281	1.01	NaN	1	0	Median	1.0979	1.0331	NaN	1	0	Median	0.96029	1.0326	NaN	1	0	Median	422500000	207260000	215240000	79485000	36658000	42827000	261070000	132730000	128350000	52918000	22982000	29936000	29027000	14893000	14134000	57565	2285	54225	350442;350443;350444;350445	472875;472876;472877;472878;472879	472878			5	
VYIVHGVQEDLR	0	Unmodified	1426.7569	0.75686319	2607	Q15024	EXOSC7	Exosome complex component RRP42	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	2	3	5	49.015	44.528	2;3	0.00024556	38092	160511_QHF_FH_JSI12i_3	77.677	60.241			0.98723	0.97828	23.127	9	3	Median	1.3559	1.1723	25.953	2	0	Median	0.77892	0.97102	24.331	2	1	Median	0.87429	0.86528	17.359	2	0	Median	1.2511	1.2523	29.768	3	2	Plateau	410760000	201200000	209560000	62440000	22340000	40100000	34264000	18026000	16237000	109040000	59316000	49728000	205010000	101520000	103490000	57566	2607	54226	350446;350447;350448;350449;350450;350451;350452;350453;350454;350455;350456;350457;350458	472880;472881;472882;472883;472884;472885;472886;472887;472888;472889;472890;472891;472892;472893;472894;472895	472892			16	
VYIYHLR	0	Unmodified	962.53379	0.53378653	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	2	3	3	2	44.06	35.798	2;3	0.0016431	19626	160513_QHF_FH_JSI10Kac_6	79.454	66.465			1.0823	1.0497	65.962	10	2	Median	1.2445	1.0662	3.3008	2	0	Median	0.85316	1.0043	117.08	3	1	Median	1.0472	0.9838	4.969	3	1	Plateau	1.1695	1.258	0.93386	2	0	Median	663470000	359760000	303710000	144670000	63322000	81345000	279040000	185830000	93210000	135480000	63730000	71747000	104280000	46870000	57413000	57567	5161	54227	350459;350460;350461;350462;350463;350464;350465;350466;350467;350468	472896;472897;472898;472899;472900;472901;472902;472903;472904;472905	472903			10	
VYIYHSSSK	1	Unmodified	1082.5397	0.53965977	1269	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	9.5	6.5			2						2	1	1		2	17.13	13.624	2;3	0.0017925	8015	160513_QHF_FH_JSI9Kac_6	51.268	37.914			1.414	1.3428	52.529	4	2	Median	0.96628	0.83831	NaN	1	0	Median	0.73174	0.86506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1207	2.1142	1.9979	2	2	Median	138110000	59798000	78311000	10337000	6650500	3686100	18940000	9485300	9454400	0	0	0	108830000	43662000	65170000	57568	1269	54228	350469;350470;350471;350472	472906;472907;472908;472909;472910	472906			5	
VYIYSSGSVEAQK	1	Unmodified	1429.7089	0.70890994	5317	Q9UHY7	ENOPH1	Enolase-phosphatase E1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	39.792	39.081	2	0.00012728	35351	160511_QHF_FH_JSI11i_1	100.72	83.696			0.69907	0.70165	30.671	5	2	Median	1.157	0.96621	45.248	2	2	Median	0.69907	0.81364	NaN	1	0	Median	0.68609	0.66983	NaN	1	0	Median	0.60104	0.61533	NaN	1	0	Median	258380000	138250000	120130000	53415000	25561000	27854000	84050000	48734000	35315000	53839000	25207000	28632000	67078000	38751000	28327000	57569	5317	54229	350473;350474;350475;350476;350477	472911;472912;472913;472914;472915;472916;472917;472918	472912			8	
VYLEAYTSVLTVGK	1	Unmodified	1541.8341	0.83411046	4680	Q9H2P9	DPH5	Diphthine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	2	2	2	2	84.916	80.454	2	5.2698E-24	42712	160513_QHF_FH_JSI10Kac_6	155.97	129			0.563	1.1952	38.218	8	5	Linear	1.4927	1.2848	60.991	2	2	Median	1.0012	1.1952	15.627	2	1	Median	1.1849	1.1793	57.771	2	1	Median	1.2749	1.3901	50.781	2	1	Median	279210000	142810000	136400000	56310000	23703000	32607000	111280000	62635000	48644000	67244000	36493000	30750000	44381000	19983000	24399000	57570	4680	54230	350478;350479;350480;350481;350482;350483;350484;350485	472919;472920;472921;472922;472923;472924;472925;472926;472927	472927			9	
VYLEDGFAYVPLK	1	Unmodified	1512.7864	0.78643198	1670	P49643	PRIM2	DNA primase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.33	0.471	2	1								1	1	1		88.511	88.208	2	0.00035386	77780	160511_QHF_FH_JSI9i_2	96.89	59.778			1.0179	0.98105	33.981	3	1	Median	1.3147	1.1198	NaN	1	1	Median	0.51731	0.58843	NaN	1	0	Median	1.0179	0.98105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77341000	41469000	35872000	23477000	12502000	10975000	24451000	14087000	10364000	29413000	14880000	14533000	0	0	0	57571	1670	54231	350486;350487;350488	472928;472929;472930	472930			2	
VYLGASTPDLQ	0	Unmodified	1162.587	0.58700389	4549	Q9BYN0	SRXN1	Sulfiredoxin-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	61.406	60.756	2	0.00013659	55171	160511_QHF_FH_JSI12i_1	95.352	79.711			0.52437	0.54227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.52437	0.54227	NaN	1	1	Median	30787000	20534000	10253000	0	0	0	0	0	0	0	0	0	30787000	20534000	10253000	57572	4549	54232	350489	472931	472931			1	
VYLGDIPLK	1	Unmodified	1016.5906	0.59063271	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.33	0.471		2	1							1		1	1	69.031	67.906	2	0.014343	59309	160511_QHF_FH_JSI11i_2	55.531	46.758			0.33071	0.33477	162.25	3	3	Median	0.045775	0.036258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.33071	0.33477	NaN	1	1	Median	0.76313	0.85367	NaN	1	1	Median	625770000	481350000	144420000	164890000	157930000	6958200	0	0	0	297020000	211010000	86007000	163870000	112410000	51452000	57573	2997	54233	350490;350491;350492	472932;472933;472934	472934			3	
VYLILEYAPLGTVYR	0	Unmodified	1768.9764	0.97635802	226	O14965	AURKA	Aurora kinase A	yes	yes	0	0	0	0		By MS/MS	By matching		16	0									2		1	1		94.604	87.044	2	2.1459E-12	50099	160513_QHF_FH_JSI10Kac_6	121.08	96.694			0.83546	0.88731	22.273	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88568	1.0387	NaN	1	0	Median	0.78809	0.75801	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	148730000	69721000	79012000	0	0	0	118350000	56556000	61794000	30383000	13165000	17218000	0	0	0	57574	226	54234	350493;350494	472935	472935			0	
VYLKGVHPK	2	Acetyl (K)	1081.6284	0.6284152	5309	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		39.56	30.016	3	0.0035695	16575	160513_QHF_FH_JSI11Kac_6	53.756	40.379			0.30857	0.30487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30857	0.30487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13104000	9443000	3661100	0	0	0	0	0	0	13104000	9443000	3661100	0	0	0	57575	5309	54235	350495	472936	472936	3360;3361		1	
VYLLYRPGHYDILYK	1	Unmodified	1912.0247	0.024705193	4077	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	5.07			3						13	3	8	3	2	76.138	69.598	2;3;4	1.6252E-31	37656	160513_QHF_FH_JSI10Kac_6	172.99	133.73			0.89698	0.98599	14.917	16	3	Median	1.2644	1.0772	2.3685	3	1	Median	0.84611	0.99326	17.225	8	2	Median	0.94755	0.88548	12.427	3	0	Median	0.90621	0.94626	9.2959	2	0	Median	18450000000	9939700000	8509900000	2210900000	944980000	1265900000	11602000000	6751000000	4851200000	2214700000	1027300000	1187400000	2421900000	1216500000	1205400000	57576	4077	54236	350496;350497;350498;350499;350500;350501;350502;350503;350504;350505;350506;350507;350508;350509;350510;350511	472937;472938;472939;472940;472941;472942;472943;472944;472945;472946;472947;472948;472949;472950;472951;472952;472953;472954;472955;472956;472957;472958	472956			22	
VYLPEPPFPHAELIQTNK	1	Unmodified	2092.0993	0.099326699	5025	Q9NV88	INTS9	Integrator complex subunit 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2.33	0.471		2	1								1	1	1	84.747	84.288	3	0.0078601	74234	160511_QHF_FH_JSI11i_2	43.024	33.463			0.792	0.80321	41.924	3	1	Median	NaN	NaN	NaN	0	0	Median	0.55118	0.66645	NaN	1	0	Median	1.5081	1.4851	NaN	1	1	Median	0.792	0.80321	NaN	1	0	Median	67571000	36062000	31509000	0	0	0	20640000	14561000	6079600	12486000	4458300	8027900	34444000	17043000	17401000	57577	5025	54237	350512;350513;350514	472959;472960;472961	472960			3	
VYLQNEYK	1	Unmodified	1055.5288	0.52876073	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.12	4.14	3	4					1			1	2	3	2	29.003	28.234	2	3.6415E-09	25477	160511_QHF_FH_JSI12i_1	136.11	101.31			0.92569	1.0435	14.61	5	1	Median	1.2247	1.055	NaN	1	0	Median	0.79021	0.98806	NaN	1	0	Median	1.0016	0.99822	28.609	2	1	Median	0.92569	1.0435	NaN	1	0	Median	1704900000	876900000	828040000	352280000	169540000	182740000	317190000	181640000	135550000	701890000	340480000	361410000	333580000	185240000	148340000	57578	1544	54238	350515;350516;350517;350518;350519;350520;350521;350522	472962;472963;472964;472965;472966;472967;472968;472969;472970;472971;472972	472965			11	
VYLQNEYKFSPTDFLAK	2	Unmodified	2062.0411	0.041143118	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	85.682	85.53	3	0.061296	74278	160511_QHF_FH_JSI12i_3	28.956	20.356			1.38	1.5007	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.38	1.5007	NaN	1	1	Median	10832000	3571900	7259800	0	0	0	0	0	0	0	0	0	10832000	3571900	7259800	57579	1544	54239	350523	472973	472973			1	
VYLTGYNFTLADILLYYGLHR	0	Unmodified	2504.3104	0.31038211	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	1.18				1					16	8	6	2	1	101.6	93.224	3	1.764E-106	49172	160513_QHF_FH_JSI12Kac_6	237.09	218.15			0.97862	1.0488	15.605	6	2	Median	1.0798	0.94087	27.709	2	2	Median	0.96017	1.1236	NaN	1	0	Median	1.1036	1.069	12.437	2	0	Median	0.92552	0.96731	NaN	1	0	Median	6963600000	3002900000	3960600000	2669900000	963990000	1705900000	3029400000	1432300000	1597100000	708090000	325160000	382940000	556180000	281500000	274680000	57580	323	54240	350524;350525;350526;350527;350528;350529;350530;350531;350532;350533;350534;350535;350536;350537;350538;350539;350540	472974;472975;472976;472977;472978;472979;472980;472981;472982;472983;472984;472985;472986;472987;472988;472989;472990;472991	472985			17	
VYMGEMGR	0	Oxidation (M)	957.40482	0.40482255	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	1	0			By MS/MS	By MS/MS	2	0		2										1	1	27.373	26.546	2	0.030454	22263	160511_QHF_FH_JSI11i_2	46.021	34.653			1.159	1.2312	26.61	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0037	1.02	NaN	1	0	Median	1.3382	1.4861	NaN	1	0	Median	230070000	116080000	113990000	0	0	0	0	0	0	125140000	62096000	63039000	104930000	53982000	50951000	57581	1100	54241	350541;350542	472992;472993	472993			2	
VYMGEMGR	0	Unmodified	941.40991	0.40990792	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	27.493	26.59	2	0.00093228	22275	160511_QHF_FH_JSI11i_2	96.285	75.131			0.86582	0.97035	3.8982	4	0	Median	1.1485	0.98931	NaN	1	0	Median	0.80505	0.98848	NaN	1	0	Median	0.91625	0.95256	NaN	1	0	Median	0.81817	0.91105	NaN	1	0	Median	2020800000	948800000	1072000000	360090000	145300000	214790000	478880000	250290000	228590000	766230000	354850000	411370000	415560000	198350000	217210000	57582	1100	54241	350543;350544;350545;350546	472994;472995;472996;472997	472996			4	
VYMGEMGRLK	1	Unmodified	1182.5889	0.58893492	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	37.468	37.305	3	0.053793	31760	160511_QHF_FH_JSI12i_3	29.926	20.972			0.11792	0.11788	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.11792	0.11788	NaN	1	1	Median	29767000	27006000	2761500	0	0	0	0	0	0	0	0	0	29767000	27006000	2761500	57583	1100	54242	350547	472998	472998			1	
VYMGHGGK	1	Unmodified	847.40106	0.4010578	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	6.2623	6.0314	2;3	0.004332	3854	160511_QHF_FH_JSI11i_3	41.429	33.089			0.87113	0.96146	22.481	8	1	Median	1.0018	0.81073	26.154	2	0	Median	0.84491	1.0068	8.5544	2	1	Median	0.7635	0.72058	2.6715	2	0	Median	1.1183	1.1619	4.2856	2	0	Median	1618100000	762190000	855920000	180860000	83281000	97584000	293220000	152960000	140270000	387450000	247960000	139490000	756570000	277980000	478590000	57584	4160	54243	350548;350549;350550;350551;350552;350553;350554;350555;350556	472999;473000;473001;473002;473003;473004;473005;473006;473007	473000			9	
VYMGPGQLYQDLQNLLHDLNVIGQITQLIGNLK	1	Unmodified	3707.9709	0.97090207	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			105.79	100.07	3	1.6479E-185	59307	160513_QHF_FH_JSI10Kac_6	279.58	268.05			1.0193	1.1956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0193	1.1956	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104080000	55812000	48263000	0	0	0	104080000	55812000	48263000	0	0	0	0	0	0	57585	233	54244	350557	473008	473008			1	
VYMYQLFR	0	Unmodified	1118.5583	0.55828672	1688	P49840	GSK3A	Glycogen synthase kinase-3 alpha	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.982	71.915	2	0.0085613	39362	160513_QHF_FH_JSI10Kac_6	70.716	58.188			1.575	1.814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.575	1.814	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	182230000	93390000	88845000	0	0	0	182230000	93390000	88845000	0	0	0	0	0	0	57586	1688	54245	350558	473009	473009			1	
VYNALVAFIR	0	Unmodified	1164.6655	0.66552898	4495	Q9BW92	TARS2	Threonine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	2	3	2	2	83.572	78.993	2	6.1184E-12	41103	160513_QHF_FH_JSI11Kac_6	151.04	128.25			1.0601	1.0272	16.432	9	1	Median	1.2487	1.0514	2.5753	2	0	Median	0.8943	1.0714	27.355	3	1	Plateau	0.95691	0.90946	17.212	2	0	Median	1.0107	1.0442	5.9825	2	0	Median	1956100000	1035700000	920480000	311180000	139110000	172070000	1039800000	596070000	443710000	455440000	223530000	231920000	149750000	76968000	72781000	57587	4495	54246	350559;350560;350561;350562;350563;350564;350565;350566;350567	473010;473011;473012;473013;473014;473015;473016;473017;473018;473019;473020	473012			11	
VYNASSTIVPSLK	1	Unmodified	1377.7504	0.75038083	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		67.177	56.134	2	0.0052505	31220	160513_QHF_FH_JSI11Kac_4	59.542	48.712			1.4137	1.3953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4137	1.3953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4385200	1892500	2492700	0	0	0	0	0	0	4385200	1892500	2492700	0	0	0	57588	4956	54247	350568	473021	473021			1	
VYNEAGVTFT	0	Unmodified	1099.5186	0.51858998	762	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4	4			1						1	2	1	1	52.434	51.765	2	4.4314E-06	46691	160511_QHF_FH_JSI10i_1	109.71	105.58			0.96491	0.9226	9.7451	4	0	Median	1.1723	0.95595	NaN	1	0	Median	0.74951	0.89042	NaN	1	0	Median	1.0994	1.0904	NaN	1	0	Median	0.84685	0.88344	NaN	1	0	Median	587410000	311910000	275500000	132210000	55641000	76567000	177940000	115810000	62129000	111550000	47255000	64300000	165710000	93206000	72501000	57589	762	54248	350569;350570;350571;350572;350573	473022;473023;473024;473025;473026;473027;473028;473029;473030	473027			9	
VYNENLVHMIEHAQK	1	Unmodified	1823.8989	0.89885275	585	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	56.048	55.925	3;4	0.00012649	48000	160511_QHF_FH_JSI12i_3	69.729	65.181			1.3736	1.3442	42	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9141	1.809	NaN	1	0	Median	0.98576	0.9988	NaN	1	0	Median	999540000	433840000	565700000	0	0	0	0	0	0	257090000	96916000	160180000	742450000	336920000	405520000	57590	585	54249	350574;350575	473031;473032;473033	473032			2	
VYNGLQGY	0	Unmodified	912.43413	0.43413207	5251	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	41.992	41.264	2	0.021736	37373	160511_QHF_FH_JSI12i_1	44.611	36.94			1.2979	1.0629	7.5344	3	0	Plateau	1.2979	1.0573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.249	1.201	NaN	1	0	Median	1.1758	1.2082	NaN	1	0	Median	335400000	142390000	193010000	133390000	51881000	81505000	0	0	0	105480000	45088000	60392000	96532000	45417000	51114000	57591	5251	54250	350576;350577;350578	473034;473035;473036;473037;473038	473035			5	
VYNNTAR	0	Unmodified	836.41407	0.41406533	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	4.917	4.5314	2	0.023369	2537	160511_QHF_FH_JSI10i_1	55.604	32.981			1.2106	1.2523	11.218	3	0	Plateau	1.4284	1.1635	NaN	1	0	Median	1.0704	1.2523	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3692	1.4503	NaN	1	0	Median	2057400000	962780000	1094600000	279660000	124030000	155630000	1005800000	491380000	514450000	0	0	0	771910000	347370000	424540000	57592	1242	54251	350579;350580;350581	473039	473039			1	
VYNSHSLR	0	Unmodified	974.49338	0.49337828	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			8.5226	7.9514	2;3	0.0018088	5839	160511_QHF_FH_JSI10i_3	52.255	36.816			0.9313	0.90507	27.754	4	0	Median	1.2195	1.0029	5.2686	2	0	Median	0.60297	0.68841	29.45	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	576210000	289240000	286970000	389960000	180250000	209710000	186250000	108990000	77263000	0	0	0	0	0	0	57593	5161	54252	350582;350583;350584;350585	473040;473041;473042	473040			3	
VYNVDGPSNNATGQSR	0	Unmodified	1677.7707	0.77067535	3679	Q8TAA9	VANGL1	Vang-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	21.108	20.808	2	3.4623E-10	17983	160511_QHF_FH_JSI10i_1	145.71	111.75			0.97911	1.0185	12.982	3	0	Median	NaN	NaN	NaN	0	0	Median	0.86916	1.0185	NaN	1	0	Median	1.3086	1.2749	NaN	1	0	Median	0.97911	1.0178	NaN	1	0	Median	139190000	74609000	64584000	0	0	0	42514000	25694000	16820000	45565000	21962000	23603000	51114000	26952000	24161000	57594	3679	54253	350586;350587;350588;350589	473043;473044;473045;473046;473047;473048;473049	473048			7	
VYNVTQHAVGIVVNK	1	Unmodified	1639.9046	0.90459006	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.97	6.55	2	9	11					6	10	9	11	10	8	54.061	49.456	2;3	5.6549E-103	25957	160513_QHF_FH_JSI9Kac_6	288.51	262.46			1.0047	1.0559	34.449	36	10	Median	1.3748	1.1372	15.059	9	2	Median	0.86347	1.05	16.665	9	2	Median	1.0212	1.0196	41.677	10	4	Median	0.90399	0.92367	50.798	8	2	Median	67198000000	35230000000	31969000000	11207000000	4745100000	6461900000	17571000000	9254100000	8316500000	20059000000	10779000000	9279400000	18362000000	10451000000	7911100000	57595	1591	54254	350590;350591;350592;350593;350594;350595;350596;350597;350598;350599;350600;350601;350602;350603;350604;350605;350606;350607;350608;350609;350610;350611;350612;350613;350614;350615;350616;350617;350618;350619;350620;350621;350622;350623;350624;350625;350626;350627	473050;473051;473052;473053;473054;473055;473056;473057;473058;473059;473060;473061;473062;473063;473064;473065;473066;473067;473068;473069;473070;473071;473072;473073;473074;473075;473076;473077;473078;473079;473080;473081;473082;473083;473084;473085;473086;473087;473088;473089;473090;473091;473092;473093;473094;473095;473096;473097;473098;473099;473100;473101;473102;473103;473104;473105;473106;473107;473108;473109;473110;473111;473112;473113;473114;473115;473116;473117;473118;473119;473120;473121;473122;473123;473124;473125;473126;473127;473128;473129;473130;473131;473132;473133;473134;473135;473136;473137	473113			87	
VYNVTQHAVGIVVNKQVK	2	Acetyl (K)	2037.1371	0.13710919	1591	P46778	RPL21	60S ribosomal protein L21	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	69.397	60.383	3	3.5631E-06	33074	160513_QHF_FH_JSI10Kac_6	99.891	90.361			1.0224	1.2408	55.918	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0224	1.2408	NaN	1	0	Median	0.41561	0.40846	NaN	1	0	Median	0.73581	0.79471	NaN	1	0	Median	50019000	31101000	18918000	0	0	0	21088000	11569000	9518700	13655000	9053200	4602300	15276000	10479000	4797300	57596	1591	54255	350628;350629;350630	473138;473139;473140;473141	473141	1612		4	
VYNWDVK	1	Unmodified	922.45487	0.45486751	1961	P61758	VBP1	Prefoldin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	37.677	37.02	2	0.011271	32455	160511_QHF_FH_JSI10i_2	62.464	39.445			0.9392	0.94575	10.903	6	0	Median	1.1882	1.0152	17.455	2	0	Median	0.94181	1.0934	NaN	1	0	Median	0.90616	0.90551	3.9884	2	0	Median	0.93659	0.96031	NaN	1	0	Median	618760000	318020000	300740000	146900000	67176000	79719000	115370000	55808000	59558000	286260000	158970000	127290000	70239000	36072000	34167000	57597	1961	54256	350631;350632;350633;350634;350635;350636;350637	473142;473143;473144;473145;473146;473147;473148;473149	473149			8	
VYNYNHLMPTR	0	Oxidation (M)	1422.6714	0.671419	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.53	5.42		4	11						4	4	5	6	4	29.985	27.558	2;3	2.8245E-05	20877	160511_QHF_FH_JSI12i_3	86.911	81.757			0.94414	1.0783	29.31	19	2	Median	1.6231	1.3448	11.892	4	0	Median	0.93108	1.0798	28.952	5	1	Median	1.0007	0.9425	33.75	6	1	Median	0.7417	0.80095	13.833	4	0	Median	3493700000	1797500000	1696200000	897750000	418630000	479120000	969100000	478150000	490960000	919500000	488560000	430940000	707340000	412160000	295180000	57598	1953	54257	350638;350639;350640;350641;350642;350643;350644;350645;350646;350647;350648;350649;350650;350651;350652;350653;350654;350655;350656	473150;473151;473152;473153;473154;473155;473156;473157;473158;473159;473160;473161;473162;473163;473164;473165;473166;473167;473168;473169;473170;473171	473167		1625	22	
VYNYNHLMPTR	0	Unmodified	1406.6765	0.67650438	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	6.03		7	11						7	6	7	6	6	42.689	39.373	2;3	2.8184E-13	32191	160511_QHF_FH_JSI9i_3	150.61	139.44			0.96633	0.99273	17.851	25	12	Median	1.2611	1.0728	19.394	6	3	Median	0.88882	1.0802	18.815	7	5	Median	1.0306	1.002	13.087	6	1	Median	0.82582	0.88611	13.546	6	3	Median	23001000000	11867000000	11134000000	7963200000	3423000000	4540300000	7567700000	4191400000	3376300000	3823600000	2047500000	1776100000	3646500000	2205100000	1441400000	57599	1953	54257	350657;350658;350659;350660;350661;350662;350663;350664;350665;350666;350667;350668;350669;350670;350671;350672;350673;350674;350675;350676;350677;350678;350679;350680;350681	473172;473173;473174;473175;473176;473177;473178;473179;473180;473181;473182;473183;473184;473185;473186;473187;473188;473189;473190;473191;473192;473193;473194;473195;473196;473197;473198;473199;473200;473201;473202;473203;473204;473205;473206;473207	473184			36	
VYPHTPTSFK	1	Unmodified	1175.5975	0.597509	1543	P42702	LIFR	Leukemia inhibitory factor receptor	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	30.339	30.306	3	0.0016072	25515	160511_QHF_FH_JSI12i_3	42.21	33.206			1.3174	1.3318	4.3295	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4403	1.3732	NaN	1	0	Median	1.2049	1.2916	NaN	1	0	Median	107290000	49057000	58232000	0	0	0	0	0	0	36646000	17952000	18694000	70642000	31105000	39538000	57600	1543	54258	350682;350683	473208;473209;473210	473210			3	
VYPSSLSK	1	Unmodified	879.47018	0.47018322	3343	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.34		3	1				1	1	1	2	2	1	2	27.917	23.607	2	0.0030848	20036	160511_QHF_FH_JSI12i_2	75.213	25.173			1.0865	1.0068	15.29	7	0	Median	1.1879	1.03	7.8573	2	0	Median	0.97933	1.1676	28.092	2	0	Median	0.98592	1.0068	NaN	1	0	Median	1.0432	1.0926	18.264	2	0	Median	682180000	347450000	334730000	13755000	5882600	7872300	150070000	85162000	64907000	277550000	135360000	142190000	240800000	121040000	119760000	57601	3343	54259	350684;350685;350686;350687;350688;350689;350690	473211;473212;473213;473214;473215;473216;473217;473218	473212			8	
VYPYLCR	0	Unmodified	969.47422	0.47422274	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		39.856	39.398	2	0.055002	33728	160511_QHF_FH_JSI11i_2	46.766	20.164			4.4037	4.4958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4037	4.4958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	468670000	46223000	422450000	0	0	0	0	0	0	468670000	46223000	422450000	0	0	0	57602	2545	54260	350691	473219	473219			1	
VYQETSEMR	0	Unmodified	1141.5074	0.50737336	2706	Q15773	MLF2	Myeloid leukemia factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	14.345	13.903	2	0.0013061	11704	160511_QHF_FH_JSI12i_1	69.628	62.434			1.0348	1.0249	18.821	4	0	Median	1.4388	1.1898	NaN	1	0	Median	0.71383	0.84946	NaN	1	0	Median	0.91221	0.88288	NaN	1	0	Median	1.1738	1.2067	NaN	1	0	Median	300370000	159870000	140500000	62840000	23355000	39485000	75099000	45613000	29486000	60901000	34633000	26268000	101530000	56271000	45261000	57603	2706	54261	350692;350693;350694;350695	473220;473221	473220			2	
VYQGLYCVAIR	0	Unmodified	1340.6911	0.69109181	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	9	7		2							2	1		1	2	65.319	59.927	2	3.1591E-07	32506	160513_QHF_FH_JSI11Kac_6	112.84	98.839			0.8602	0.92193	14.366	4	0	Median	1.319	1.1614	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.84621	0.82727	NaN	1	0	Median	0.85217	0.92193	2.4771	2	0	Median	193320000	102540000	90776000	30494000	13832000	16662000	0	0	0	87889000	46771000	41117000	74938000	41941000	32998000	57604	2598	54262	350696;350697;350698;350699	473222;473223;473224	473223			3	
VYQLLVNEQEPCK	1	Unmodified	1618.8025	0.80249275	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			53.301	52.897	2	0.019636	47901	160511_QHF_FH_JSI10i_1	42.336	1.6112			0.79027	0.90313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79027	0.90313	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	118270000	66047000	52219000	0	0	0	118270000	66047000	52219000	0	0	0	0	0	0	57605	4152	54263	350700	473225	473225			1	
VYQSLCPTSWVTDWDEQRAEGTFPGK	1	Unmodified	3056.3974	0.39743557	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		92.834	92.834	3	0.0063786	82785	160511_QHF_FH_JSI11i_3	32.72	30.213			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57606	1061	54264	350701	473226	473226			1	
VYQSLCPTSWVTDWDEQRAEGTFPGKI	1	Unmodified	3169.4815	0.48149955	1061	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	yes	yes	0	0	0	2			By MS/MS		3	0			2									2		100.81	100.81	3	3.2565E-41	89810	160511_QHF_FH_JSI11i_3	170.16	158.14			1.1026	1.0159	11.274	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1026	1.0159	11.274	2	2	Median	NaN	NaN	NaN	0	0	Median	138800000	67325000	71474000	0	0	0	0	0	0	138800000	67325000	71474000	0	0	0	57607	1061	54265	350702;350703	473227;473228	473227			2	
VYQWDDPDPR	0	Unmodified	1289.5677	0.56766543	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	3.76	4	5					1			2	2	3	3	42.738	40.866	2	1.6418E-06	37047	160511_QHF_FH_JSI11i_1	125.48	109.82			1.0169	1.2205	15.298	9	1	Median	1.6383	1.401	11.241	2	0	Median	1.0173	1.2305	1.1457	2	0	Median	1.1718	1.1533	22.594	2	1	Median	0.91388	1.0555	5.1926	3	0	Plateau	3631300000	1758600000	1872600000	603140000	215000000	388140000	1005900000	496330000	509570000	933900000	509410000	424490000	1088300000	537900000	550440000	57608	1650	54266	350704;350705;350706;350707;350708;350709;350710;350711;350712;350713	473229;473230;473231;473232;473233;473234;473235;473236;473237;473238;473239;473240;473241;473242;473243;473244	473230			15	
VYRDDIGR	0	Unmodified	992.50394	0.50394297	4017	Q96CW1	AP2M1	AP-2 complex subunit mu	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			5							2	2	1		11.503	10.907	2;3	0.046496	8386	160511_QHF_FH_JSI10i_3	27.001	16.136			1.1053	1.0503	13.744	5	0	Median	1.5428	1.2651	1.9088	2	0	Median	0.83978	0.97579	7.2304	2	0	Median	1.1053	1.0503	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	410880000	197200000	213680000	94196000	38128000	56067000	208260000	107180000	101080000	108430000	51898000	56530000	0	0	0	57609	4017	54267	350714;350715;350716;350717;350718	473245;473246	473245			2	
VYREELK	1	Unmodified	935.50763	0.50763136	805	P04083	ANXA1	Annexin A1	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	2.5	0.5		2	2							1	2		1	11.118	10.711	3	0.022295	7969	160511_QHF_FH_JSI12i_3	44.447	25.716			0.91204	0.8682	21.939	4	1	Median	0.92199	0.78621	NaN	1	0	Median	0.85309	1.0099	32.024	2	0	Median	NaN	NaN	NaN	0	0	Median	0.90221	0.93605	NaN	1	1	Median	3690400000	2167100000	1523300000	508440000	316260000	192190000	1204500000	650460000	554040000	0	0	0	1977400000	1200400000	777040000	57610	805	54268	350719;350720;350721;350722	473247;473248;473249	473249			3	
VYRIEGDETSTEAATR	0	Unmodified	1796.8541	0.85407063	1771	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							1	1	2	2	26.878	26.272	3	1.3975E-30	22528	160511_QHF_FH_JSI11i_3	156.67	138.31			1.0623	1.0812	20.977	6	0	Median	1.3157	1.1159	NaN	1	0	Median	0.87882	1.065	NaN	1	0	Median	1.0623	1.0426	7.2921	2	0	Median	0.91157	0.94625	43.893	2	0	Median	575110000	301340000	273760000	91880000	40946000	50935000	158930000	84126000	74804000	259400000	137760000	121640000	64893000	38511000	26382000	57611	1771	54269	350723;350724;350725;350726;350727;350728	473250;473251;473252;473253;473254	473251			5	
VYRLELGFK	1	Unmodified	1123.639	0.63897988	4038	Q96E29	MTERF3	Transcription termination factor 3, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				58.759	57.213	3	0.059206	46969	160511_QHF_FH_JSI9i_3	28.958	22.653			1.4287	1.1575	NaN	1	1	Median	1.4287	1.1575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25685000	8957900	16727000	25685000	8957900	16727000	0	0	0	0	0	0	0	0	0	57612	4038	54270	350729	473255	473255			1	
VYSDLHAFYYSWYGSPR	0	Unmodified	2109.9585	0.95847612	2979	Q5VSG8	MANEAL	Glycoprotein endo-alpha-1,2-mannosidase-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	80.917	72.66	3	9.486E-12	39169	160513_QHF_FH_JSI9Kac_6	128.69	122.85			1.0094	1.0736	12.753	4	0	Median	1.4757	1.2557	NaN	1	0	Median	0.91789	1.0797	NaN	1	0	Median	1.11	1.0674	NaN	1	0	Median	0.87866	0.91896	NaN	1	0	Median	619410000	282860000	336550000	145440000	56147000	89290000	243920000	112910000	131000000	120290000	57508000	62784000	109760000	56291000	53470000	57613	2979	54271	350730;350731;350732;350733	473256;473257;473258	473256			3	
VYSLDDIRR	0	Unmodified	1135.5986	0.59857163	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.62	0.484		3	5							1	3	4		38.317	37.545	2;3	0.0001503	33057	160511_QHF_FH_JSI10i_2	76.679	59.439			0.94726	1.0126	20.582	7	1	Median	1.2505	1.0608	NaN	1	0	Median	0.77898	0.89135	12.17	3	0	Median	1.0575	1.0126	31.276	3	1	Median	NaN	NaN	NaN	0	0	Median	1049000000	536220000	512810000	139930000	60691000	79235000	453650000	256620000	197030000	455450000	218910000	236550000	0	0	0	57614	2545	54272	350734;350735;350736;350737;350738;350739;350740;350741	473259;473260;473261;473262;473263	473263			5	
VYSLFLDESR	0	Unmodified	1227.6136	0.61355299	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		66.447	65.711	2	0.051892	57244	160511_QHF_FH_JSI11i_2	35.224	24.073			1.3108	1.2525	80.38	2	0	Median	2.5081	2.2111	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68504	0.70946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81605000	30334000	51270000	46045000	12776000	33270000	0	0	0	35559000	17559000	18001000	0	0	0	57615	5487	54273	350742;350743	473264;473265	473265			2	
VYSPHVLNLTLIDLPGITK	1	Unmodified	2092.1932	0.19322708	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	3	3	3	4	98.341	95.721	2;3	9.4445E-43	87886	160511_QHF_FH_JSI12i_3	201.67	191.3			0.99354	1.0332	15.105	12	0	Median	1.2307	1.061	1.1817	2	0	Median	0.94495	1.0886	3.8472	3	0	Plateau	1.0335	0.98091	7.0087	3	0	Median	0.95769	0.98801	27.2	4	0	Median	5229300000	2554000000	2675300000	603970000	331850000	272120000	1254800000	625380000	629460000	1194800000	584210000	610590000	2175700000	1012600000	1163100000	57616	1711	54274	350744;350745;350746;350747;350748;350749;350750;350751;350752;350753;350754;350755;350756	473266;473267;473268;473269;473270;473271;473272;473273;473274;473275;473276;473277;473278;473279;473280;473281;473282	473277			16	
VYSQLTMQK	1	Unmodified	1096.5587	0.55868065	4751	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1.75	0.433	1	3								1	1	1	1	30.544	29.664	2	0.032902	25051	160511_QHF_FH_JSI12i_2	39.547	18.922			0.71095	0.68941	48.699	4	0	Median	0.78884	0.66499	NaN	1	0	Median	0.93341	1.1221	NaN	1	0	Median	0.36743	0.34424	NaN	1	0	Median	0.64075	0.71472	NaN	1	0	Median	136170000	86673000	49501000	49793000	29560000	20234000	25543000	14892000	10652000	24272000	18491000	5781400	36564000	23731000	12834000	57617	4751	54275	350757;350758;350759;350760	473283	473283			1	
VYSRGDSEPLSEAAQAHTR	0	Unmodified	2072.9875	0.98754442	482	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				26.867	25.512	4	0.015085	20666	160511_QHF_FH_JSI9i_3	35.036	14.386			1.0394	0.85826	NaN	1	1	Median	1.0394	0.85826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23387000	10787000	12601000	23387000	10787000	12601000	0	0	0	0	0	0	0	0	0	57618	482	54276	350761	473284;473285	473284			2	
VYSSHTGYPGGFR	0	Unmodified	1426.663	0.6629628	4543	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		27.313	26.316	2;3	4.946E-05	21798	160511_QHF_FH_JSI10i_3	84.718	76.993			0.93053	0.94618	9.6732	4	1	Median	1.0422	0.84572	NaN	1	0	Median	0.90529	1.0191	0.85433	2	0	Median	0.94966	0.88384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	291240000	159840000	131400000	23934000	11424000	12510000	169560000	96554000	73009000	97747000	51861000	45886000	0	0	0	57619	4543	54277	350762;350763;350764;350765	473286;473287;473288;473289;473290;473291;473292	473289			7	
VYSTALSSFLTK	1	Unmodified	1315.7024	0.702368	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.54		3	4					1	4	4	3	2	3	78.316	74.199	2	1.3218E-10	66360	160511_QHF_FH_JSI12i_3	141.88	122.09			0.9444	0.93156	19.315	12	1	Median	1.1199	0.93156	8.2234	4	0	Median	0.89683	1.0675	28.777	3	1	Plateau	1.0296	0.99837	29.516	2	0	Median	0.97947	0.99021	21.346	3	0	Plateau	2117200000	1134000000	983160000	448030000	200830000	247200000	439110000	250730000	188380000	488800000	237120000	251680000	741270000	445370000	295900000	57620	4361	54278	350766;350767;350768;350769;350770;350771;350772;350773;350774;350775;350776;350777	473293;473294;473295;473296;473297;473298;473299;473300;473301;473302;473303;473304;473305;473306;473307;473308;473309;473310;473311;473312;473313;473314;473315	473313			23	
VYSTSVTGSR	0	Unmodified	1055.5247	0.52473799	4669	Q9H299	SH3BGRL3	SH3 domain-binding glutamic acid-rich-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	6.18	2	4					3	1		1	3	4	2	17.609	13.875	2	8.8468E-05	11797	160511_QHF_FH_JSI12i_2	85.731	76.143			1.0681	1.0724	10.069	10	0	Median	1.1594	0.96863	NaN	1	0	Median	0.85892	1.0342	2.6848	3	0	Median	1.1699	1.138	7.8511	4	0	Median	0.92457	1.0155	16.298	2	0	Median	1387500000	679440000	708090000	224570000	91171000	133400000	422630000	233000000	189630000	521410000	254620000	266800000	218910000	100650000	118270000	57621	4669	54279	350778;350779;350780;350781;350782;350783;350784;350785;350786;350787	473316;473317;473318;473319;473320;473321;473322;473323;473324;473325;473326;473327;473328	473317			13	
VYSYALALK	1	Unmodified	1026.575	0.57498264	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8.14	6.53		2	2					1	2	2	2		3	59.533	54.952	2	0.00066253	48548	160511_QHF_FH_JSI10i_2	76.478	48.055			1.4847	1.3398	48.236	7	6	Median	1.2692	1.0556	33.718	2	2	Median	0.9495	1.1533	64.07	2	1	Median	NaN	NaN	NaN	0	0	Median	1.7085	1.8963	58.387	3	3	Median	2925000000	1298300000	1626800000	441910000	196990000	244920000	1067300000	494150000	573130000	0	0	0	1415800000	607120000	808700000	57622	5370	54280	350788;350789;350790;350791;350792;350793;350794	473329;473330;473331;473332;473333;473334;473335;473336;473337	473334			9	
VYSYALALKHANAK	2	Acetyl (K)	1589.8566	0.85657723	5370	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	63.439	53.652	3	2.9535E-05	29032	160513_QHF_FH_JSI11Kac_6	95.631	90.553			0.43877	0.44809	64.591	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29668	0.2838	NaN	1	0	Median	0.6489	0.70749	NaN	1	1	Median	82263000	66412000	15851000	0	0	0	0	0	0	65786000	55508000	10278000	16477000	10904000	5573300	57623	5370	54281	350795;350796	473338;473339	473338	3372;3373		2	
VYSYFECR	0	Unmodified	1122.4804	0.48043033	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	38.768	37.815	2	0.039164	32098	160511_QHF_FH_JSI12i_2	39.663	27.307			0.99242	1.1072	13.358	4	0	Median	1.3681	1.1958	NaN	1	0	Median	0.85743	1.0251	NaN	1	0	Median	0.89645	0.91175	NaN	1	0	Median	1.0987	1.2039	NaN	1	0	Median	281170000	140200000	140960000	28278000	12091000	16186000	63602000	33118000	30483000	126630000	64659000	61974000	62653000	30333000	32321000	57624	1566	54282	350797;350798;350799;350800	473340;473341	473340			2	
VYTDVQQVASSLTHPR	0	Unmodified	1799.9166	0.91661131	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	64.091	63.441	2;3	1.239E-15	54929	160511_QHF_FH_JSI12i_3	139.6	139.6			1.1696	1.0796	19.405	6	0	Median	1.2396	1.05	NaN	1	0	Median	0.7465	0.91621	NaN	1	0	Median	1.2454	1.2344	15.002	2	0	Median	1.1061	1.1919	30.839	2	0	Median	2384300000	1172200000	1212100000	242870000	114090000	128780000	465610000	278230000	187380000	895320000	415850000	479470000	780460000	364020000	416440000	57625	2509	54283	350801;350802;350803;350804;350805;350806;350807	473342;473343;473344;473345;473346;473347;473348;473349	473349			8	
VYTENVDKR	1	Unmodified	1122.5669	0.56693715	6	A0FGR8	ESYT2	Extended synaptotagmin-2	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	9.8954	9.9901	3	0.011449	7349	160511_QHF_FH_JSI12i_3	43.651	36.991			1.1492	1.1645	18.27	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1492	1.1645	18.27	2	2	Median	124240000	57665000	66578000	0	0	0	0	0	0	0	0	0	124240000	57665000	66578000	57626	6	54284	350808;350809	473350;473351	473351			2	
VYTFNSVR	0	Unmodified	984.50288	0.50288033	1168;1239;2758;2177	P23634;P20020;Q01814;Q16720	ATP2B4;ATP2B1;ATP2B2;ATP2B3	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 3	no	no	0	0	0	0	By MS/MS				3	0			1							1				34.539	33.108	2	0.048721	26987	160511_QHF_FH_JSI9i_3	37.558	17.276			1.6424	1.3533	NaN	1	0	Median	1.6424	1.3533	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	41936000	15402000	26533000	41936000	15402000	26533000	0	0	0	0	0	0	0	0	0	57627	1239;1168;2177;2758	54285	350810	473352	473352			1	
VYTHEVVTLWYR	0	Unmodified	1564.8038	0.80381338	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.5	6.62		4	5						13	2	5	6	9	67.902	62.324	2;3	5.9831E-31	32608	160513_QHF_FH_JSI12Kac_6	201.33	187.13			0.92654	1.0468	36.806	18	9	Median	1.2843	1.1012	7.8137	2	0	Median	0.90087	1.0558	4.4339	4	3	Median	1.3919	1.3594	63.432	5	2	Median	0.88645	0.932	19.14	7	4	Median	7539300000	3459500000	4079800000	1022400000	436100000	586340000	2848400000	1484000000	1364400000	2321000000	852190000	1468800000	1347600000	687230000	660330000	57628	850	54286	350811;350812;350813;350814;350815;350816;350817;350818;350819;350820;350821;350822;350823;350824;350825;350826;350827;350828;350829;350830;350831;350832	473353;473354;473355;473356;473357;473358;473359;473360;473361;473362;473363;473364;473365;473366;473367;473368;473369;473370;473371;473372;473373;473374;473375;473376;473377;473378;473379;473380;473381;473382;473383;473384	473374			31	
VYTHNLYYLAQVYQHLEMFEK	1	Oxidation (M)	2704.2996	0.29955942	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	90.13	80.976	4	6.3952E-18	45456	160513_QHF_FH_JSI11Kac_6	132.65	120.33			0.954	0.96192	9.398	3	0	Plateau	1.1382	0.96192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.94186	0.88639	NaN	1	0	Median	1.0174	1.0691	NaN	1	0	Median	572560000	300160000	272400000	163210000	92415000	70800000	0	0	0	211570000	120620000	90952000	197770000	87120000	110650000	57629	4047	54287	350833;350834;350835	473385;473386;473387;473388	473386		2383	4	
VYTHNLYYLAQVYQHLEMFEK	1	Unmodified	2688.3046	0.3046448	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	91.002	82.98	3;4	2.5189E-74	45871	160513_QHF_FH_JSI9Kac_6	215.79	202.86			0.89048	0.99874	48.947	9	2	Median	1.3481	1.1511	9.2981	2	0	Median	0.85015	0.99874	5.4628	3	2	Plateau	0.96166	0.91349	12.618	2	0	Median	0.4508	0.4794	96.097	2	0	Median	4588400000	2173500000	2414800000	1207600000	508170000	699430000	2399400000	1157200000	1242300000	808540000	418520000	390020000	172780000	89676000	83099000	57630	4047	54287	350836;350837;350838;350839;350840;350841;350842;350843;350844	473389;473390;473391;473392;473393;473394;473395;473396;473397	473392			8	
VYTKGAGSGELK	2	Acetyl (K)	1250.6507	0.65066678	1192	P21333	FLNA	Filamin-A	yes	yes	1	0	0	1		By matching	By MS/MS		14	0							2				1	1		35.546	26.124	2	0.0009349	16212	160513_QHF_FH_JSI11Kac_4	83.862	70.27			0.55305	0.59199	78.822	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88062	1.0336	NaN	1	0	Median	0.34733	0.33905	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9740900	6600500	3140400	0	0	0	2235500	1170200	1065300	7505400	5430300	2075100	0	0	0	57631	1192	54288	350845;350846	473398	473398	1051		1	
VYTLSVSGDR	0	Unmodified	1095.556	0.55603812	359	O43684	BUB3	Mitotic checkpoint protein BUB3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.44	3	4					2	3		2	4	3	3	40.324	36.149	2	0.00044464	31803	160511_QHF_FH_JSI9i_2	74.376	57.6			0.97515	1.3238	22.47	11	4	Linear	1.1273	0.96777	20.455	2	1	Median	1.0269	1.0509	20.622	4	2	Linear	1.1504	1.1548	25.617	3	1	Median	1.1185	1.2269	28.528	2	0	Median	2022800000	909470000	1113400000	204430000	95742000	108680000	591150000	253860000	337280000	701170000	315220000	385950000	526100000	244640000	281460000	57632	359	54289	350847;350848;350849;350850;350851;350852;350853;350854;350855;350856;350857;350858	473399;473400;473401;473402;473403;473404;473405;473406;473407;473408;473409;473410;473411;473412	473406			14	
VYTLTPFLANNR	0	Unmodified	1407.751	0.75104953	1657	P49407	ARRB1	Beta-arrestin-1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	75.146	74.273	2	0.00024126	64455	160511_QHF_FH_JSI12i_3	93.178	79.408			1.1388	1.0126	52.689	2	2	Median	1.7593	1.4698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73713	0.69765	NaN	1	1	Median	45509000	20425000	25084000	14184000	4950200	9233900	0	0	0	0	0	0	31325000	15474000	15851000	57633	1657	54290	350859;350860	473413;473414	473414			2	
VYTQVEFKR	1	Unmodified	1168.6241	0.6240581	4913	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	yes	yes	0	0	0	1	By matching	By MS/MS		By MS/MS	16	0									3	1	1		1	36.487	27.605	3	0.0016663	15556	160513_QHF_FH_JSI10Kac_6	53.683	38.143			1.2428	1.3487	10.114	3	0	Median	1.534	1.3487	NaN	1	0	Median	1.2428	1.475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1174	1.2054	NaN	1	0	Median	14652000	6569300	8082500	3002700	1369600	1633200	7972300	3045700	4926600	0	0	0	3676700	2154000	1522800	57634	4913	54291	350861;350862;350863	473415	473415			1	
VYTVGPDYAHAEAR	0	Unmodified	1547.7369	0.73685603	321	O43314;Q6PFW1	PPIP5K2;PPIP5K1	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2;Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	yes	no	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	34.199	32.869	3	0.0022352	28526	160511_QHF_FH_JSI9i_2	49.482	42.443			1.2742	1.3602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2742	1.3602	NaN	1	1	Median	26100000	10238000	15861000	0	0	0	0	0	0	0	0	0	26100000	10238000	15861000	57635	321	54292	350864;350865	473416;473417	473417			2	
VYTYVFHK	1	Unmodified	1055.544	0.54401687	3646	Q8NEZ3	WDR19	WD repeat-containing protein 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			44.358	35.743	3	0.015254	19040	160513_QHF_FH_JSI9Kac_6	43.083	35.703			0.88051	1.0276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88051	1.0276	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4423700	2828900	1594900	0	0	0	4423700	2828900	1594900	0	0	0	0	0	0	57636	3646	54293	350866;350867	473418;473419	473418			1	
VYVGNLGNNGNK	1	Unmodified	1247.6258	0.62584901	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	5.95	4	4	7				2	4	1	4	5	6	7	31.456	27.666	2	9.9417E-30	23114	160511_QHF_FH_JSI12i_3	171.73	156.58			1.0882	1.1514	19.755	17	4	Median	1.1783	0.96471	25.207	2	2	Median	0.86555	1.025	18.341	5	0	Median	1.2039	1.1607	14.21	5	1	Median	1.0882	1.1242	22.932	5	1	Median	3482300000	1534800000	1947500000	49331000	21430000	27901000	825700000	384190000	441510000	1166500000	475920000	690590000	1440800000	653280000	787500000	57637	2131	54294	350868;350869;350870;350871;350872;350873;350874;350875;350876;350877;350878;350879;350880;350881;350882;350883;350884;350885;350886;350887;350888;350889	473420;473421;473422;473423;473424;473425;473426;473427;473428;473429;473430;473431;473432;473433;473434;473435;473436;473437;473438;473439;473440;473441;473442;473443;473444;473445	473445			25	
VYVGNLGNNGNKTELER	1	Unmodified	1875.9439	0.94388869	2131	P84103	SRSF3	Serine/arginine-rich splicing factor 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			39.602	38.101	3	7.9367E-05	31195	160511_QHF_FH_JSI9i_3	72.207	62.924			0.73736	0.72203	35.237	2	0	Median	0.68427	0.56279	NaN	1	0	Median	0.79458	0.92633	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	87415000	48567000	38848000	42333000	24997000	17336000	45082000	23570000	21512000	0	0	0	0	0	0	57638	2131	54295	350890;350891	473446;473447;473448	473448			3	
VYVGNLGTGAGK	1	Unmodified	1134.6033	0.60332266	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.85	3.32	5	3	4				1			3	2	3	5	36.73	35.349	2	9.6406E-07	31658	160511_QHF_FH_JSI11i_1	134.68	80.127			1.0389	1.0153	39.825	11	3	Median	1.1229	0.95187	28.871	2	0	Median	0.95286	1.152	17.86	2	0	Median	1.0389	0.99971	24.201	3	0	Median	1.0932	1.1685	66.03	4	3	Median	3624600000	1785400000	1839200000	624540000	298680000	325860000	941140000	526830000	414300000	1315700000	634930000	680790000	743240000	324990000	418250000	57639	2745	54296	350892;350893;350894;350895;350896;350897;350898;350899;350900;350901;350902;350903;350904	473449;473450;473451;473452;473453;473454;473455;473456;473457;473458;473459;473460;473461;473462;473463;473464	473451			15	
VYVGNLGTGAGKGELER	1	Unmodified	1718.8951	0.89514758	2745	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	2.88	0.331		1	7							3	2	2	1	44.028	42.946	2;3	1.6339E-05	35015	160511_QHF_FH_JSI9i_3	68.82	57.558			1.2685	1.0736	32.3	7	2	Median	1.2685	1.0147	32.754	3	1	Plateau	0.74965	0.87455	29.003	2	1	Median	0.9742	0.92436	NaN	1	0	Median	1.527	1.531	NaN	1	0	Median	761970000	327480000	434500000	272600000	92252000	180340000	232740000	124090000	108650000	203810000	86611000	117190000	52831000	24522000	28309000	57640	2745	54297	350905;350906;350907;350908;350909;350910;350911;350912	473465;473466;473467;473468;473469;473470;473471;473472	473470			8	
VYVGSIYYELGEDTIR	0	Unmodified	1875.9254	0.92544466	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.58	6.02		8	1						3	3	3	4	2	87.772	85.405	2;3	1.4069E-32	43357	160513_QHF_FH_JSI10Kac_6	204.48	167.63			0.9457	1.1474	9.7292	12	2	Linear	1.2848	1.1213	15.78	3	0	Plateau	0.95694	1.1051	8.2107	3	0	Plateau	0.94695	1.0188	8.439	4	2	Linear	0.8996	0.98638	4.0684	2	0	Median	617680000	315450000	302230000	156620000	72379000	84242000	176520000	96649000	79876000	202370000	109150000	93215000	82166000	37265000	44901000	57641	5315	54298	350913;350914;350915;350916;350917;350918;350919;350920;350921;350922;350923;350924	473473;473474;473475;473476;473477;473478;473479;473480;473481;473482;473483;473484;473485;473486;473487;473488;473489;473490;473491;473492;473493;473494	473494			22	
VYVHYKGK	2	Acetyl (K)	1034.5549	0.5549159	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		29.081	19.919	3	0.035906	11672	160513_QHF_FH_JSI11Kac_6	39.022	26.066			0.20869	0.20588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.20869	0.20588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13345000	12496000	849770	0	0	0	0	0	0	13345000	12496000	849770	0	0	0	57642	2419	54299	350925	473495	473495			1	
VYVIGSFVDK	1	Unmodified	1125.607	0.60701105	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.6	5.33		2					1	4	3	3	4	2	1	73.335	65.342	2	3.9192E-07	35334	160513_QHF_FH_JSI11Kac_6	108.98	82.015			1.4387	1.4493	97.01	10	6	Median	1.6617	1.4062	129.22	3	3	Median	1.0529	6.0427	119.37	4	2	Linear	1.4384	1.3907	35.41	2	1	Median	1.3497	1.4937	NaN	1	0	Median	2456600000	385440000	2071100000	1160200000	136890000	1023300000	1044800000	164000000	880760000	241980000	81940000	160040000	9646500	2607100	7039400	57643	3217	54300	350926;350927;350928;350929;350930;350931;350932;350933;350934;350935	473496;473497;473498;473499;473500;473501;473502;473503;473504	473497			9	
VYVPTGFSAFPFELLHTPEK	1	Unmodified	2278.1674	0.16740626	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.23		4	3						3	3	3	3	1	99.519	97.03	3	1.4208E-33	84118	160511_QHF_FH_JSI10i_3	190.71	179.25			0.93404	0.87946	13.875	10	0	Median	1.0083	0.82604	10.448	3	0	Plateau	0.78264	0.95815	23.7	3	0	Median	0.86525	0.96476	8.003	3	0	Plateau	0.69866	0.78046	NaN	1	0	Median	4275800000	2130000000	2145800000	726930000	337400000	389520000	1241500000	648790000	592690000	2028500000	983960000	1044500000	278950000	159870000	119070000	57644	862	54301	350936;350937;350938;350939;350940;350941;350942;350943;350944;350945	473505;473506;473507;473508;473509;473510;473511;473512;473513;473514;473515;473516;473517	473508			13	
VYVQHLLK	1	Unmodified	998.5913	0.59130141	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.3	6.36		5	10						8	6	5	7	5	38.637	34.956	2;3	0.00015898	30236	160511_QHF_FH_JSI11i_3	100.45	78.987			1.0134	1.0341	74.521	23	3	Median	1.2081	1.0449	17.599	6	0	Median	0.85241	0.97585	5.4156	5	1	Median	1.0629	1.0341	139.22	7	2	Median	1.0134	1.0567	20.625	5	0	Median	6610800000	3220700000	3390200000	1436000000	685220000	750780000	1239500000	640260000	599250000	1972400000	838450000	1133900000	1962900000	1056700000	906190000	57645	1100	54302	350946;350947;350948;350949;350950;350951;350952;350953;350954;350955;350956;350957;350958;350959;350960;350961;350962;350963;350964;350965;350966;350967;350968	473518;473519;473520;473521;473522;473523;473524;473525;473526;473527;473528;473529;473530;473531;473532;473533;473534;473535;473536;473537;473538;473539;473540;473541;473542;473543;473544;473545;473546;473547;473548;473549;473550;473551;473552;473553;473554;473555;473556;473557;473558;473559;473560;473561;473562	473520			45	
VYVVEGSK	1	Unmodified	879.47018	0.47018322	575	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								2	1	1	1	19.548	18.966	2	0.011665	16203	160511_QHF_FH_JSI11i_1	53.968	24.819			0.97273	1.041	7.8956	5	0	Median	1.3524	1.1366	0.90088	2	0	Median	0.90156	1.041	NaN	1	0	Median	0.97273	0.95723	NaN	1	0	Median	0.93571	0.98823	NaN	1	0	Median	979100000	513860000	465240000	214570000	101910000	112660000	313720000	177590000	136130000	237550000	119910000	117640000	213250000	114450000	98801000	57646	575	54303	350969;350970;350971;350972;350973	473563;473564;473565;473566;473567;473568	473564			6	
VYVVGTAHFSDDSK	1	Unmodified	1523.7256	0.72562264	4721	Q9H4I3	TRABD	TraB domain-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	40.254	40.156	3	4.7041E-05	34312	160511_QHF_FH_JSI12i_3	73.887	63.402			1.1081	1.0905	21.72	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97591	0.93525	NaN	1	0	Median	1.2581	1.2715	NaN	1	0	Median	141110000	67413000	73700000	0	0	0	0	0	0	55396000	27461000	27935000	85717000	39952000	45765000	57647	4721	54304	350974;350975;350976	473569;473570;473571;473572	473572			4	
VYWDNGAQIISPHDK	1	Unmodified	1741.8424	0.84238373	4080	Q96G03	PGM2	Phosphoglucomutase-2	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				55.74	54.72	3	0.0020779	48066	160511_QHF_FH_JSI9i_2	58.09	46.82			0.18016	0.15518	NaN	1	1	Median	0.18016	0.15518	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	357660000	310550000	47107000	357660000	310550000	47107000	0	0	0	0	0	0	0	0	0	57648	4080	54305	350977	473573	473573			1	
VYWIASVIQTAGYR	0	Unmodified	1625.8566	0.85657723	3946	Q969R5	L3MBTL2	Lethal(3)malignant brain tumor-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	90.245	81.566	2	8.3894E-07	46795	160513_QHF_FH_JSI10Kac_6	107.06	82.674			0.90272	0.89019	37.328	7	2	Median	1.6325	1.3848	62.488	2	0	Median	0.6896	0.82759	NaN	1	0	Median	0.80986	0.79464	17.652	2	1	Median	0.79511	0.85242	15.603	2	1	Median	404420000	221710000	182710000	82705000	30633000	52073000	92802000	57441000	35361000	136450000	76585000	59864000	92461000	57047000	35414000	57649	3946	54306	350978;350979;350980;350981;350982;350983;350984	473574;473575;473576;473577	473577			4	
VYWTNWHTGTISYR	0	Unmodified	1782.8478	0.84780346	2259	Q07954	LRP1	Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									7		4	2	1	71.126	62.563	2;3	1.137E-09	34334	160513_QHF_FH_JSI10Kac_6	117.94	93.146			1.1518	1.1923	25.962	4	2	Median	NaN	NaN	NaN	0	0	Median	0.89564	1.0637	39.637	2	1	Median	1.1076	1.0505	NaN	1	1	Median	1.2461	1.3533	NaN	1	0	Median	132850000	93097000	39753000	0	0	0	98810000	75103000	23706000	17938000	9828100	8110400	16102000	8165100	7936600	57650	2259	54307	350985;350986;350987;350988;350989;350990;350991	473578;473579;473580;473581;473582;473583;473584	473584			7	
VYYDGTVEQHPFGEAAYPADGADAGQK	1	Unmodified	2855.2675	0.26746725	3275	Q7Z4R8	C6orf120	UPF0669 protein C6orf120	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	58.334	57.794	3	1.0531E-06	52407	160511_QHF_FH_JSI11i_1	61.801	58.814			0.95255	0.99643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95255	0.99643	NaN	1	1	Median	33408000	2551200	30856000	0	0	0	0	0	0	13127000	0	13127000	20280000	2551200	17729000	57651	3275	54308	350992;350993	473585;473586	473585			2	
VYYDISTAK	1	Unmodified	1058.5284	0.52842638	475	O75116	ROCK2	Rho-associated protein kinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.559	34.954	2	0.0040651	31301	160511_QHF_FH_JSI10i_1	57.59	46.368			0.75976	0.74859	22.851	4	0	Median	0.91553	0.75471	NaN	1	0	Median	0.63049	0.74252	NaN	1	0	Median	0.99988	0.98387	NaN	1	0	Median	0.55336	0.56232	NaN	1	0	Median	355180000	199880000	155310000	67330000	37773000	29557000	89901000	57550000	32351000	115520000	59704000	55816000	82433000	44852000	37581000	57652	475	54309	350994;350995;350996;350997	473587;473588;473589;473590	473589			4	
VYYFNHITNASQWER	0	Unmodified	1926.9013	0.90129559	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.465	59.591	3	0.0003019	32763	160513_QHF_FH_JSI10Kac_6	74.772	64.672			0.53032	0.63602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53032	0.63602	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9085500	6320000	2765500	0	0	0	9085500	6320000	2765500	0	0	0	0	0	0	57653	2433	54310	350998	473591	473591			1	
VYYFNHITNASQWERPSGNSSSGGK	1	Unmodified	2785.2845	0.28445472	2433	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	62.844	53.79	3;4	1.2217E-64	29474	160513_QHF_FH_JSI10Kac_6	197.92	188.46			1.0036	1.069	11.178	6	0	Median	1.2218	1.0573	9.6864	2	0	Median	0.89814	1.069	7.0672	2	0	Median	0.88392	0.8557	NaN	1	0	Median	1.0561	1.1376	NaN	1	0	Median	283150000	141840000	141310000	58179000	25668000	32511000	185360000	96841000	88516000	21969000	11181000	10788000	17645000	8154000	9490900	57654	2433	54311	350999;351000;351001;351002;351003;351004	473592;473593;473594;473595;473596;473597;473598;473599;473600;473601	473599			10	
VYYLSWLR	0	Unmodified	1098.5862	0.58621603	733;3526	O95819;Q8N4C8	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	2	1	1	2	82.129	76.376	2	0.00023078	40371	160513_QHF_FH_JSI11Kac_6	117.93	93.731			0.89516	1.0561	32.052	6	0	Plateau	0.92559	0.77961	34.054	2	0	Median	0.87272	1.0368	NaN	1	0	Median	1.1321	1.0758	NaN	1	0	Median	0.66598	0.69628	45.97	2	0	Median	1755400000	872400000	883050000	338440000	162990000	175450000	755030000	389520000	365510000	436900000	190480000	246430000	225070000	129420000	95654000	57655	733;3526	54312	351005;351006;351007;351008;351009;351010	473602;473603;473604;473605;473606;473607	473602			6	
VYYNAGPK	1	Unmodified	910.45487	0.45486751	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.4	15.423	2	0.057914	12492	160511_QHF_FH_JSI12i_2	44.447	27.061			1.4169	1.5417	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4169	1.5417	NaN	1	1	Median	24985000	9349200	15636000	0	0	0	0	0	0	0	0	0	24985000	9349200	15636000	57656	382	54313	351011	473608	473608			1	
VYYSYSQISHK	1	Unmodified	1373.6616	0.66156582	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.7	5.59			3					1	8	3	3	3	3	37.301	30.593	2;3	3.1957E-36	16914	160513_QHF_FH_JSI11Kac_6	174.77	160.34			1.1679	1.1715	20.134	11	0	Median	1.1235	0.96641	28.692	3	0	Plateau	1.0734	1.2736	14.145	2	0	Median	1.0082	0.9361	20.58	3	0	Median	1.1679	1.1715	15.742	3	0	Median	464510000	205040000	259460000	55131000	24478000	30653000	45663000	25813000	19850000	133150000	62150000	70996000	230570000	92603000	137960000	57657	5229	54314	351012;351013;351014;351015;351016;351017;351018;351019;351020;351021;351022;351023	473609;473610;473611;473612;473613;473614;473615;473616;473617;473618;473619;473620;473621;473622;473623;473624;473625	473612			17	
VYYSYSQISHKHNVPDDGLPLQSQQLPQSGK	2	Acetyl (K)	3554.743	0.74301062	5229	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	73.55	64.838	4	8.8867E-21	35086	160513_QHF_FH_JSI11Kac_6	108.71	99.245			0.85418	0.89667	14.611	4	0	Median	0.83763	0.7162	NaN	1	0	Median	0.82205	0.94141	NaN	1	0	Median	0.87107	0.85406	NaN	1	0	Median	0.92996	1.0009	NaN	1	0	Median	175310000	92041000	83270000	20809000	8506900	12302000	84557000	46444000	38113000	42212000	22978000	19234000	27733000	14111000	13621000	57658	5229	54315	351024;351025;351026;351027	473626;473627;473628;473629;473630;473631;473632	473626	3342		7	
VYYTAGYNSPVK	1	Unmodified	1360.6663	0.66631685	5692	Q9Y5Z4	HEBP2	Heme-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	40.857	39.878	2	0.00050571	34821	160511_QHF_FH_JSI9i_2	85.377	74.854			1.2203	1.1713	28.331	5	4	Median	1.4533	1.2591	10.219	2	2	Median	0.90929	1.0728	NaN	1	1	Median	0.70839	0.66654	NaN	1	1	Median	1.2203	1.2863	NaN	1	0	Median	89372000	44765000	44607000	38297000	15705000	22592000	17432000	9867600	7564000	16486000	10768000	5717600	17157000	8424100	8733200	57659	5692	54316	351028;351029;351030;351031;351032	473633;473634;473635;473636;473637	473635			5	
VYYTMEPEHPVGNWQK	1	Unmodified	1976.9091	0.90908309	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	52.621	52.503	3	1.1053E-05	45047	160511_QHF_FH_JSI12i_3	95.57	77.205			0.97258	0.94137	32.198	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2538	1.1821	NaN	1	0	Median	0.75441	0.74969	NaN	1	0	Median	136240000	61211000	75028000	0	0	0	0	0	0	59796000	22057000	37740000	76442000	39154000	37288000	57660	2390	54317	351033;351034	473638;473639	473639			2	
VYYYNAR	0	Unmodified	947.45012	0.45011648	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	21.253	20.255	2	0.028437	16760	160511_QHF_FH_JSI12i_2	53.098	42.684			0.83386	0.97264	5.2186	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75657	0.9374	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.91903	1.0092	NaN	1	0	Median	158170000	90828000	67345000	0	0	0	78291000	45956000	32335000	0	0	0	79882000	44872000	35010000	57661	203	54318	351035;351036	473640	473640			1	
WAAGQNK	1	Unmodified	773.38204	0.38203692	455	O60869	EDF1	Endothelial differentiation-related factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	3	1	7.7024	7.5013	2	0.010475	5249	160511_QHF_FH_JSI11i_3	65.263	57.259			1.2269	1.0978	24.431	5	1	Median	1.3254	1.0978	NaN	1	0	Median	0.70474	0.8192	NaN	1	0	Median	1.1872	1.135	35.7	2	1	Median	1.2269	1.2833	NaN	1	0	Median	1214900000	580320000	634540000	71521000	39451000	32071000	122670000	67819000	54848000	490990000	241560000	249430000	529680000	231490000	298190000	57662	455	54319	351037;351038;351039;351040;351041;351042	473641;473642;473643;473644	473642			4	
WAANSFER	0	Unmodified	979.45118	0.45117911	5328	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			32.37	31.425	2	0.015199	27567	160511_QHF_FH_JSI10i_2	49.418	33.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57663	5328	54320	351043	473645	473645			1	
WAAQTIR	0	Unmodified	844.45554	0.45553621	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			24.274	22.986	2	0.019031	18928	160511_QHF_FH_JSI10i_3	58.981	49.231			1.3218	1.2766	18.096	2	0	Median	1.3794	1.1233	NaN	1	0	Median	1.2666	1.4509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100400000	42837000	57564000	27086000	10766000	16320000	73316000	32072000	41244000	0	0	0	0	0	0	57664	100	54321	351044;351045	473646;473647	473646			2	
WAAVVVPSGEEQR	0	Unmodified	1426.7205	0.72047768	1354;2788;1353;1124	P30480;P30460;P18463;P30462;P01889;Q29718;P03989;Q04826;P30488;P30487;P30485;P30483;P30461;P13747;P30508;Q29960;P30510;Q07000;P30505;Q9TNN7;P30504;P30501;Q29963;Q29865;P01893;P17693	HLA-B;HLA-E;HLA-C;HLA-H;HLA-G	HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain;HLA class I histocompatibility antigen, alpha chain E;HLA class I histocompatibility antigen, Cw-12 alpha chain;HLA class I histocompatibility antigen, Cw-16 alpha chain;HLA class I histocompatibility antigen, Cw-14 alpha chain;HLA class I histocompatibility antigen, Cw-15 alpha chain;HLA class I histocompatibility antigen, Cw-8 alpha chain;HLA class I histocompatibility antigen, Cw-5 alpha chain;HLA class I histocompatibility antigen, Cw-4 alpha chain;HLA class I histocompatibility antigen, Cw-2 alpha chain;HLA class I histocompatibility antigen, Cw-6 alpha chain;HLA class I histocompatibility antigen, Cw-18 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H;HLA class I histocompatibility antigen, alpha chain G	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	6.24	7	4	1				2	4		4	5	4	5	54.418	50.306	2	7.483E-07	44412	160511_QHF_FH_JSI10i_2	131.09	105.04			0.92448	0.94912	11.888	18	8	Median	1.265	1.0292	11.185	4	1	Median	0.74537	0.91747	8.7005	5	2	Median	0.96532	0.95363	8.4771	4	2	Median	0.89167	0.97405	14.91	5	3	Median	3319800000	1826200000	1493600000	504000000	266670000	237330000	900980000	541580000	359400000	1147500000	632380000	515080000	767330000	385570000	381760000	57665	1353;1354;2788;1124	54322	351046;351047;351048;351049;351050;351051;351052;351053;351054;351055;351056;351057;351058;351059;351060;351061;351062;351063	473648;473649;473650;473651;473652;473653;473654;473655;473656;473657;473658;473659;473660;473661;473662;473663;473664;473665;473666;473667;473668;473669;473670;473671;473672;473673	473671			26	
WADPQISESNFSPK	1	Unmodified	1604.7471	0.74708636	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.07	1	3					3			1	3	1	2	63.189	58.437	2;3	3.0357E-07	52968	160511_QHF_FH_JSI10i_1	91.123	70.084			2.2166	1.8919	40.814	5	3	Median	2.2166	1.8919	NaN	1	1	Median	2.5397	3.0899	NaN	1	1	Median	2.7568	2.758	NaN	1	1	Median	1.2115	1.3009	7.6691	2	0	Median	273220000	64425000	208800000	87656000	19713000	67943000	76040000	19515000	56526000	103320000	22890000	80432000	6203800	2306600	3897200	57666	4494	54323	351064;351065;351066;351067;351068;351069;351070	473674;473675;473676;473677;473678;473679;473680;473681	473675			8	
WADVRFPEK	1	Unmodified	1146.5822	0.58219329	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	45.644	45.043	3	0.018485	38485	160511_QHF_FH_JSI12i_3	32.523	26.291			0.879	0.9845	12.93	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86655	1.0788	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89163	0.89848	NaN	1	0	Median	112580000	55097000	57479000	0	0	0	29970000	14303000	15667000	0	0	0	82606000	40794000	41812000	57667	4856	54324	351071;351072	473682;473683	473683			2	
WAEDQNSLLK	1	Unmodified	1202.5932	0.5931519	1685;31	P49792;A6NKT7;Q7Z3J3	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	no	no	0	0	0	0				By MS/MS	14	0							1						1	55.352	44.763	2	0.00063311	25405	160513_QHF_FH_JSI12Kac_4	76.827	61.165			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57668	1685;31	54325	351073	473684	473684			1	
WAEQYLK	1	Unmodified	936.47052	0.47051757	1332	P30040	ERP29	Endoplasmic reticulum resident protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.91	6.86	2	4						3	2	3	3	2	3	42.147	37.762	2	0.01104	34119	160511_QHF_FH_JSI11i_1	72.234	50.933			1.11	1.2471	25.6	10	0	Median	0.90762	0.75912	5.0599	3	0	Median	1.036	1.2118	13.683	3	0	Median	1.287	1.2867	0.36666	2	0	Median	1.2476	1.3539	1.6561	2	0	Median	1478200000	660170000	818040000	224030000	83948000	140090000	410840000	227030000	183810000	578870000	232890000	345980000	264470000	116300000	148170000	57669	1332	54326	351074;351075;351076;351077;351078;351079;351080;351081;351082;351083;351084	473685;473686;473687;473688;473689;473690;473691;473692;473693;473694;473695;473696;473697;473698;473699;473700	473685			16	
WAESVPEEAPGFSNTSLIILHQLEDK	1	Unmodified	2909.4447	0.44470334	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0			By MS/MS	By MS/MS	6	5.79		1	2						1			2	2	99.12	96.736	3	5.4161E-36	87911	160511_QHF_FH_JSI12i_3	163.61	138.2			1.4674	1.4951	42.477	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1794	1.1072	NaN	1	1	Median	1.8257	2.0189	NaN	1	1	Median	659610000	252920000	406690000	0	0	0	0	0	0	200690000	69700000	130990000	458920000	183220000	275700000	57670	3765	54327	351085;351086;351087;351088	473701;473702;473703	473703			3	
WAEYHADIYDK	1	Unmodified	1409.6252	0.62518031	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	50.173	40.99	3	0.0042168	21439	160513_QHF_FH_JSI12Kac_6	53.967	48.813			2.0544	2.3345	33.968	2	2	Median	NaN	NaN	NaN	0	0	Median	1.5421	1.836	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.7369	2.9683	NaN	1	1	Median	37411000	11635000	25776000	0	0	0	25414000	8112700	17301000	0	0	0	11998000	3522400	8475100	57671	4971	54328	351089;351090;351091	473704;473705;473706	473705			3	
WAFSMYDLDGNGYISR	0	Unmodified	1893.8356	0.83558379	1468	P37235	HPCAL1	Hippocalcin-like protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									3		2		1	87.849	80.269	2	3.3273E-15	45961	160513_QHF_FH_JSI10Kac_6	130.79	116.1			1.0068	1.1262	11.16	2	1	Median	NaN	NaN	NaN	0	0	Median	1.053	1.2187	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96261	1.0407	NaN	1	0	Median	80082000	47235000	32847000	0	0	0	55558000	35214000	20344000	0	0	0	24524000	12021000	12504000	57672	1468	54329	351092;351093;351094	473707;473708;473709;473710	473710			4	
WAGFHTIK	1	Unmodified	958.50249	0.5024864	3436	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	6.25	5.63			3						1	1	1	1	1	39.466	36.546	3	0.00022294	29906	160511_QHF_FH_JSI9i_3	92.439	63.927			0.68992	0.70889	7.0296	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.62244	0.74149	NaN	1	1	Median	0.67563	0.64601	NaN	1	0	Median	0.68992	0.70889	NaN	1	0	Median	212810000	101990000	110820000	0	0	0	8244100	3842900	4401200	61527000	31449000	30079000	143040000	66697000	76338000	57673	3436	54330	351095;351096;351097;351098	473711;473712;473713	473711			3	
WAGGGFLSTVGDLLK	1	Unmodified	1519.8035	0.80347903	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	101.94	101.83	2	9.0908E-05	84432	160511_QHF_FH_JSI10i_3	108.56	85.923			0.74207	0.76725	3.2721	3	1	Median	0.94032	0.76725	NaN	1	1	Median	0.6898	0.79955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74207	0.74951	NaN	1	0	Median	344640000	203640000	141000000	56130000	26107000	30022000	123970000	88385000	35581000	0	0	0	164550000	89148000	75399000	57674	2118	54331	351099;351100;351101	473714;473715;473716;473717	473714			4	
WAGLAEMR	0	Unmodified	932.45382	0.45382165	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2.33	0.471		2	1							1	1		1	48.778	47.552	2	0.0066274	41602	160511_QHF_FH_JSI9i_2	61.999	50.094			1.1417	1.1196	44.917	2	0	Median	1.8266	1.5382	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7136	0.81494	NaN	1	0	Median	75577000	32550000	43027000	40306000	11714000	28591000	0	0	0	0	0	0	35272000	20836000	14436000	57675	3988	54332	351102;351103;351104	473718;473719	473719			2	
WAHLDIAGVMTNK	1	Unmodified	1454.734	0.73401926	1313	P28838	LAP3	Cytosol aminopeptidase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	7.33	6.13			2						1		2		1	70.437	67.39	2;3	0.0030974	58549	160511_QHF_FH_JSI12i_3	56.225	49.097			0.87308	0.96176	20.968	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71588	0.82923	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0648	1.1155	NaN	1	0	Median	126200000	78308000	47895000	0	0	0	66989000	48303000	18686000	0	0	0	59214000	30005000	29209000	57676	1313	54333	351105;351106;351107	473720;473721;473722	473721			2	
WAIAQLNYADMLK	1	Unmodified	1535.7806	0.7806351	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.89	6.84		3	1						5	2	2	3	2	94.362	90.388	2	1.0104E-15	44637	160513_QHF_FH_JSI11Kac_6	141.88	111.31			0.87029	0.87239	19.395	7	2	Median	0.87309	0.7421	34.756	2	0	Median	0.74409	0.92281	NaN	1	0	Median	0.88524	0.85367	3.0687	2	1	Median	0.91625	0.97015	16.235	2	1	Median	456230000	245650000	210580000	145410000	79258000	66156000	59910000	32571000	27339000	205010000	112400000	92608000	45893000	21415000	24478000	57677	2517	54334	351108;351109;351110;351111;351112;351113;351114;351115;351116	473723;473724;473725;473726;473727;473728;473729;473730;473731;473732;473733;473734	473724			12	
WAIELSGPGGGSR	0	Unmodified	1285.6415	0.64149908	2892	Q5J8M3	EMC4	ER membrane protein complex subunit 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	61.038	60.901	2	0.0081823	52429	160511_QHF_FH_JSI12i_3	50.648	46.035			1.086	1.0652	4.8466	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1719	1.1023	NaN	1	1	Median	1.0064	1.0293	NaN	1	0	Median	239970000	122200000	117770000	0	0	0	0	0	0	121860000	63998000	57863000	118110000	58197000	59909000	57678	2892	54335	351117;351118	473735;473736	473736			2	
WAIIEEFTK	1	Unmodified	1135.5914	0.59136099	796	P03891	MT-ND2	NADH-ubiquinone oxidoreductase chain 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	85.664	84.983	2	0.0017027	73511	160511_QHF_FH_JSI12i_2	67.897	53.69			1.1916	1.3077	23.192	4	0	Median	1.0605	0.8783	NaN	1	0	Median	1.1173	1.3726	NaN	1	0	Median	1.2707	1.2458	NaN	1	0	Median	1.3274	1.4866	NaN	1	0	Median	156540000	80822000	75718000	25582000	12159000	13423000	34615000	14533000	20082000	49856000	24425000	25431000	46487000	29705000	16782000	57679	796	54336	351119;351120;351121;351122	473737;473738	473737			1	
WAILNVMGK	1	Unmodified	1030.5634	0.5633721	2386	Q13315	ATM	Serine-protein kinase ATM	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		82.242	81.273	2	0.0044694	68134	160511_QHF_FH_JSI10i_3	67.032	47.555			1.1185	1.1314	51.879	4	4	Median	0.98574	0.82757	NaN	1	1	Median	0.77886	0.91854	73.689	2	2	Median	1.6994	1.5933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44621000	24982000	19639000	12285000	6431400	5853100	19953000	13073000	6879900	12384000	5477900	6906000	0	0	0	57680	2386	54337	351123;351124;351125;351126	473739;473740;473741;473742	473740			4	
WALHILAR	0	Unmodified	978.57632	0.57632005	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			6						12	4	4	6	4	65.562	58.569	2;3	0.0011324	31875	160513_QHF_FH_JSI11Kac_6	63.21	50.854			1.0252	1.0632	18.795	11	2	Median	1.1752	1.0228	20.057	3	0	Plateau	0.979	1.1688	22.776	4	2	Median	1.2276	1.1784	1.0859	2	0	Median	0.99402	1.037	3.5259	2	0	Median	3762000000	1817000000	1945000000	441130000	216040000	225080000	2091100000	990140000	1100900000	608060000	285090000	322970000	621780000	325780000	296000000	57681	686	54338	351127;351128;351129;351130;351131;351132;351133;351134;351135;351136;351137;351138;351139;351140;351141;351142;351143;351144	473743;473744;473745;473746;473747;473748;473749;473750;473751;473752;473753;473754;473755;473756;473757;473758;473759;473760;473761;473762;473763;473764;473765;473766;473767;473768;473769;473770;473771	473749			29	
WALHIVAR	0	Unmodified	964.56067	0.56066998	287	O15397	IPO8	Importin-8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	57.54	48.36	3	0.004191	26482	160513_QHF_FH_JSI10Kac_6	54.157	44.917			0.80593	0.92138	18.945	3	0	Plateau	1.0165	0.88594	NaN	1	0	Median	0.80562	0.92138	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1605	1.2522	NaN	1	0	Median	141010000	78605000	62409000	35357000	19192000	16165000	84319000	48690000	35629000	0	0	0	21338000	10723000	10614000	57682	287	54339	351145;351146;351147	473772;473773;473774;473775;473776	473776			5	
WALSQSNPSALR	0	Unmodified	1328.6837	0.68369824	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.19	3	4	4						4	3	4	4	4	54.411	51.352	2	1.2291E-10	44509	160511_QHF_FH_JSI11i_2	142.83	118.8			0.89122	0.9463	10.978	15	0	Median	1.2982	1.1203	10.679	3	0	Median	0.79568	0.94379	4.4143	4	0	Median	0.93534	0.92852	7.9209	4	0	Median	0.90762	0.85976	9.3056	4	0	Linear	8568100000	4231400000	4336700000	1959600000	800500000	1159100000	2585400000	1368200000	1217300000	2267000000	1125400000	1141700000	1756100000	937360000	818710000	57683	1846	54340	351148;351149;351150;351151;351152;351153;351154;351155;351156;351157;351158;351159;351160;351161;351162	473777;473778;473779;473780;473781;473782;473783;473784;473785;473786;473787;473788;473789;473790;473791;473792;473793;473794;473795;473796;473797;473798;473799;473800;473801;473802;473803;473804	473795			28	
WALSSLLQQLLK	1	Unmodified	1398.8235	0.82348619	3150	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		98.996	91.498	2	7.8936E-07	54527	160513_QHF_FH_JSI10Kac_6	126.31	115.48			0.86331	0.92733	20.94	4	4	Median	1.091	0.9277	NaN	1	1	Median	0.86331	1.0202	13.562	2	2	Median	0.72914	0.67734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	483590000	252990000	230600000	94141000	42469000	51672000	335290000	177740000	157550000	54166000	32782000	21384000	0	0	0	57684	3150	54341	351163;351164;351165;351166	473805;473806;473807;473808	473807			4	
WALWFFK	1	Unmodified	996.52216	0.52215921	853	P06730;A6NMX2	EIF4E;EIF4E1B	Eukaryotic translation initiation factor 4E;Eukaryotic translation initiation factor 4E type 1B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.1	5.4			4						14	5	5	5	3	95.843	89.425	1;2	0.0066928	49445	160513_QHF_FH_JSI9Kac_6	91.093	50.825			1.0234	1.0251	18.689	18	0	Median	1.01	0.89412	23.938	5	0	Median	0.94584	1.0427	21.76	5	0	Median	1.1427	1.1498	16.056	5	0	Median	1.0455	1.0555	3.2886	3	0	Median	43937000000	19948000000	23989000000	9995600000	4223500000	5772100000	10369000000	4526400000	5842500000	12476000000	5018700000	7457000000	11097000000	6179300000	4917400000	57685	853	54342	351167;351168;351169;351170;351171;351172;351173;351174;351175;351176;351177;351178;351179;351180;351181;351182;351183;351184	473809;473810;473811;473812;473813;473814;473815;473816;473817;473818;473819;473820;473821;473822;473823;473824;473825;473826;473827;473828;473829;473830;473831	473822			23	
WANFHLENSGWQK	1	Unmodified	1615.7532	0.75317479	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	4.78			26						5	11	12	4	4	63.36	60.727	2;3	1.7336E-07	50861	160511_QHF_FH_JSI9i_3	92.856	71.299			0.95181	0.86521	31.607	26	7	Median	1.0082	0.83024	14.13	8	2	Median	0.97935	1.1212	37.788	11	2	Median	0.89275	0.84333	23.845	4	2	Median	0.61904	0.63073	27.739	3	1	Plateau	5353700000	2771500000	2582300000	834420000	407330000	427100000	1583200000	766510000	816660000	1454900000	734170000	720750000	1481200000	863460000	617780000	57686	1039	54343	351185;351186;351187;351188;351189;351190;351191;351192;351193;351194;351195;351196;351197;351198;351199;351200;351201;351202;351203;351204;351205;351206;351207;351208;351209;351210;351211;351212;351213;351214;351215	473832;473833;473834;473835;473836;473837;473838;473839;473840;473841;473842;473843;473844;473845;473846;473847;473848;473849;473850;473851;473852;473853;473854;473855;473856;473857;473858;473859;473860;473861;473862;473863;473864;473865;473866;473867;473868;473869;473870;473871;473872;473873;473874;473875;473876;473877;473878;473879;473880;473881;473882;473883;473884;473885	473874			53	
WAPGSVKPIYK	2	Unmodified	1244.6917	0.69174374	5047	Q9NVS2	MRPS18A	28S ribosomal protein S18a, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	44.273	43.147	3	0.00078064	36073	160511_QHF_FH_JSI10i_3	60.598	48.329			0.98575	0.74655	21.911	3	0	Plateau	1.0902	0.88654	NaN	1	0	Median	0.98575	1.1534	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73656	0.74655	NaN	1	0	Median	888690000	412690000	476000000	280900000	121660000	159250000	279720000	121050000	158670000	0	0	0	328060000	169980000	158080000	57687	5047	54344	351216;351217;351218	473886;473887	473886			2	
WAPNENK	1	Unmodified	857.40317	0.40316629	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	15.076	14.224	2	0.020509	11310	160511_QHF_FH_JSI12i_2	60.648	26.461			0.43603	0.48933	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43603	0.48933	NaN	1	1	Median	148470000	97984000	50485000	0	0	0	0	0	0	0	0	0	148470000	97984000	50485000	57688	255	54345	351219	473888	473888			1	
WAPNENKFAVGSGSR	1	Acetyl (K)	1660.7958	0.79576789	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		66.79	57.151	2	0.0033393	31000	160513_QHF_FH_JSI11Kac_6	76.522	57.28			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5055600	5055600	0	0	0	0	0	0	0	5055600	5055600	0	0	0	0	57689	255	54346	351220	473889	473889	137		1	
WAQFFIHPLMIR	0	Oxidation (M)	1573.8228	0.82277468	387	O43847	NRD1	Nardilysin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	83.779	75.59	2;3	3.2974E-05	40032	160513_QHF_FH_JSI12Kac_6	93.111	77.845			1.3833	1.268	32.475	7	0	Median	1.5114	1.268	NaN	1	0	Median	1.4677	1.7327	9.1857	2	0	Median	0.92696	0.886	31.294	2	0	Median	1.2027	1.2669	27.506	2	0	Median	3684800000	1558600000	2126200000	914290000	358460000	555830000	1663500000	652550000	1010900000	574940000	273910000	301040000	532130000	273710000	258430000	57690	387	54347	351221;351222;351223;351224;351225;351226;351227	473890;473891;473892;473893;473894;473895;473896;473897;473898;473899;473900;473901	473898		155	12	
WAQFFIHPLMIR	0	Unmodified	1557.8279	0.82786006	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	86.179	78.286	2;3	7.8262E-24	43165	160513_QHF_FH_JSI11Kac_6	161.79	150.26			1.0674	1.0601	19.535	8	3	Median	1.1819	1.0245	NaN	1	0	Median	0.91795	1.097	26.672	3	3	Median	1.2377	1.1736	0.64594	2	0	Median	0.84654	0.88558	19.446	2	0	Median	15399000000	7575000000	7823700000	2045200000	721700000	1323500000	7903300000	3976300000	3927000000	3141800000	1629400000	1512400000	2308300000	1247600000	1060700000	57691	387	54347	351228;351229;351230;351231;351232;351233;351234;351235	473902;473903;473904;473905;473906;473907;473908;473909;473910;473911;473912;473913	473904			12	
WAQIHLVK	1	Unmodified	993.57599	0.5759857	163	O00754	MAN2B1	Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	41.917	41.806	3	0.015326	36796	160511_QHF_FH_JSI11i_3	42.109	25.906			0.93335	0.91495	2.32	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95695	0.90006	NaN	1	1	Median	0.91034	0.93008	NaN	1	1	Median	320680000	135520000	185160000	0	0	0	0	0	0	121770000	48777000	72994000	198910000	86747000	112170000	57692	163	54348	351236;351237	473914;473915	473914			2	
WASGLTPAQNCPR	0	Unmodified	1456.6881	0.6881317	299	O15533	TAPBP	Tapasin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3								2	2	2	36.971	36.246	2	0.0013487	31824	160511_QHF_FH_JSI10i_2	63.694	57.161			0.98196	1.0544	36.599	6	0	Median	NaN	NaN	NaN	0	0	Median	0.87868	1.0324	11.682	2	0	Median	0.80918	0.78537	32.963	2	0	Median	1.4515	1.5481	28.487	2	0	Median	169020000	85810000	83208000	0	0	0	61645000	34450000	27195000	54319000	27908000	26411000	53054000	23451000	29602000	57693	299	54349	351238;351239;351240;351241;351242;351243	473916;473917;473918;473919;473920;473921;473922;473923;473924;473925;473926	473924			11	
WASSLHGSLFPHLSLR	0	Unmodified	1806.9529	0.95293723	4956	Q9NRG9	AAAS	Aladin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.388	71.321	3	0.0016015	39014	160513_QHF_FH_JSI10Kac_6	63.691	45.774			0.63969	0.74674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.63969	0.74674	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61568000	34449000	27118000	0	0	0	61568000	34449000	27118000	0	0	0	0	0	0	57694	4956	54350	351244	473927	473927			1	
WATHGEPSPVNSHPQR	0	Unmodified	1798.8499	0.84992873	2242	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				23.605	22.308	4	0.032344	18001	160511_QHF_FH_JSI9i_3	18.455	17.63			1.3855	1.1036	NaN	1	0	Median	1.3855	1.1036	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52838000	29741000	23097000	52838000	29741000	23097000	0	0	0	0	0	0	0	0	0	57695	2242	54351	351245	473928	473928			1	
WAVIQGQAVR	0	Unmodified	1126.6247	0.6247268	3411	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3							1	2	1	1	45.75	44.986	2	0.0023184	38360	160511_QHF_FH_JSI12i_3	60.59	51.002			0.85097	0.74177	17.984	5	0	Median	0.85097	0.74177	NaN	1	0	Median	0.54839	0.65986	7.6629	2	0	Median	1.0029	0.97548	NaN	1	0	Median	0.86144	0.88266	NaN	1	0	Median	231550000	133820000	97723000	36981000	22161000	14820000	65105000	40878000	24226000	63147000	31879000	31268000	66314000	38906000	27409000	57696	3411	54352	351246;351247;351248;351249;351250	473929;473930;473931;473932;473933;473934;473935	473935			7	
WAVSSGSSTALLYSK	1	Unmodified	1555.7882	0.7882229	261	O15164	TRIM24	Transcription intermediary factor 1-alpha	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	11.3	6.6		1							2	1		1	1	70.596	64.174	2	1.5507E-06	34636	160513_QHF_FH_JSI11Kac_6	124.86	109.59			0.78141	0.7582	8.8986	3	1	Plateau	1.0639	0.90565	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78141	0.7582	NaN	1	0	Median	0.75026	0.82169	NaN	1	1	Median	35021000	20737000	14284000	8158500	4833500	3325000	0	0	0	14502000	7419200	7083000	12360000	8484000	3876000	57697	261	54353	351251;351252;351253	473936;473937;473938	473938			3	
WCAHTNVELK	1	Unmodified	1256.5972	0.59719142	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	30.167	29.696	3	0.0021402	24767	160511_QHF_FH_JSI12i_3	43.419	32.895			1.6688	1.6437	12.599	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1722	1.386	NaN	1	0	Median	1.6056	1.5195	NaN	1	0	Median	1.716	1.7782	NaN	1	0	Median	85091000	31581000	53510000	0	0	0	8711700	2895000	5816700	37403000	13413000	23990000	38976000	15273000	23703000	57698	2094	54354	351254;351255;351256	473939	473939			1	
WCEYGLTFTEK	1	Unmodified	1432.6333	0.63330216	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	6.43	1	5	1						3	2	2	3	3	68.781	65.631	2	0.00010126	57568	160511_QHF_FH_JSI11i_2	100.48	84.595			0.98577	0.9298	21.685	10	6	Median	1.0251	0.87445	7.6198	2	2	Median	0.87949	1.0575	17.143	2	1	Median	0.8272	0.85686	28.897	3	2	Median	1.0252	1.1524	26.298	3	1	Median	1407100000	681240000	725810000	230260000	129240000	101020000	272750000	123530000	149230000	515570000	232070000	283500000	388470000	196400000	192070000	57699	1570	54355	351257;351258;351259;351260;351261;351262;351263;351264;351265;351266	473940;473941;473942;473943;473944;473945;473946;473947;473948;473949;473950;473951;473952;473953	473948			14	
WCNEHLK	1	Unmodified	985.44399	0.44398525	1192;512;2527	P21333;O75369;Q14315	FLNA;FLNB;FLNC	Filamin-A;Filamin-B;Filamin-C	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5								1	4	3	13.201	13.001	2;3	0.0084918	9513	160511_QHF_FH_JSI12i_3	46.426	27.695			0.86086	0.89688	44.156	8	2	Median	NaN	NaN	NaN	0	0	Median	1.0066	1.2253	NaN	1	0	Median	0.75082	0.7126	60.535	4	1	Median	0.88227	1.5649	32.183	3	1	Plateau	872050000	333210000	538850000	0	0	0	54012000	30346000	23666000	463800000	202080000	261720000	354240000	100780000	253470000	57700	1192;512;2527	54356	351267;351268;351269;351270;351271;351272;351273;351274	473954;473955;473956;473957;473958;473959;473960	473959			7	
WCSWSLSQAR	0	Unmodified	1279.5768	0.57679033	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.57	5.97		1	4						2	1	3	2	1	56.486	52.794	2	0.00022292	28969	160513_QHF_FH_JSI10Kac_6	93.649	84.736			0.87592	0.94633	8.9135	6	0	Median	1.2898	1.05	NaN	1	0	Median	0.89048	1.0035	3.93	3	0	Plateau	0.89169	0.84728	2.8436	2	0	Median	NaN	NaN	NaN	0	0	Median	517130000	246680000	270460000	109940000	43089000	66851000	294870000	147700000	147170000	112320000	55889000	56431000	0	0	0	57701	895	54357	351275;351276;351277;351278;351279;351280;351281	473961;473962;473963;473964;473965;473966;473967;473968;473969;473970	473970			10	
WCSYSASNNSTIDSAWK	1	Unmodified	1975.837	0.83704036	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	57.451	57.197	2	1.7818E-16	50832	160511_QHF_FH_JSI11i_3	121.28	115.44			1.3322	1.4314	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3322	1.4314	NaN	1	1	Median	19566000	5267200	14299000	0	0	0	0	0	0	0	0	0	19566000	5267200	14299000	57702	3290	54358	351282;351283	473971;473972	473971			2	
WCTISTHEANK	1	Unmodified	1345.6085	0.60848439	66	CON__Q29443;CON__Q0IIK2			yes	no	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	19.691	19.7	2;3	0.00344	16020	160511_QHF_FH_JSI12i_3	68.557	59.603		+	1.149	1.1054	7.2167	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1034	1.0488	NaN	1	0	Median	1.0968	1.0873	9.771	2	1	Median	370760000	154690000	216070000	0	0	0	0	0	0	129270000	64452000	64815000	241500000	90241000	151260000	57703	66	54359	351284;351285;351286	473973;473974	473973			1	
WDAWNALGSLPK	1	Unmodified	1356.6826	0.68263561	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	91.942	91.462	2	8.1236E-05	78835	160511_QHF_FH_JSI12i_2	93.258	74.946			1.0017	0.9248	15.779	5	2	Median	1.0017	0.849	NaN	1	1	Median	0.74203	0.90388	NaN	1	1	Median	1.0953	1.0656	20.04	2	0	Median	1.019	1.1276	NaN	1	0	Median	492510000	211440000	281070000	71110000	37621000	33489000	126780000	70126000	56655000	168430000	52882000	115550000	126180000	50808000	75376000	57704	538	54360	351287;351288;351289;351290;351291	473975;473976;473977;473978;473979;473980	473976			6	
WDAWNELK	1	Unmodified	1060.4978	0.49779495	863	P07108	DBI	Acyl-CoA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							2	2	2	3	64.156	63.395	2	0.00067397	54162	160511_QHF_FH_JSI12i_2	100.45	90.464			0.85769	0.97659	29.393	9	1	Plateau	1.125	0.91038	4.2284	2	0	Median	0.90062	1.0891	34.564	2	0	Median	0.99974	1.0052	4.0882	2	0	Median	0.73183	0.8214	43.214	3	1	Plateau	2917800000	1584000000	1333800000	451210000	250260000	200950000	652210000	385300000	266910000	1192600000	639540000	553100000	621730000	308900000	312830000	57705	863	54361	351292;351293;351294;351295;351296;351297;351298;351299;351300	473981;473982;473983;473984;473985;473986;473987;473988;473989;473990;473991;473992;473993;473994;473995;473996;473997;473998;473999;474000;474001	473983			21	
WDDPYYDIAR	0	Unmodified	1312.5724	0.57241646	2261	Q07960	ARHGAP1	Rho GTPase-activating protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	4.5	5.5	2	1					1					2	2	64.367	61.154	2	0.026988	55742	160511_QHF_FH_JSI11i_1	54.608	43.916			0.8509	0.84458	16.206	4	2	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83704	0.81707	7.0923	2	2	Median	0.9887	1.0692	3.7538	2	0	Median	133980000	69710000	64267000	0	0	0	0	0	0	108040000	54536000	53506000	25934000	15173000	10760000	57706	2261	54362	351301;351302;351303;351304	474002;474003;474004;474005	474003			2	
WDDSGNDIIVLAK	1	Unmodified	1444.7198	0.71980898	1421;1272	P35221;P26232	CTNNA1;CTNNA2	Catenin alpha-1;Catenin alpha-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	74.001	73.562	2	0.00012851	66896	160511_QHF_FH_JSI12i_1	85.958	71.751			0.85346	0.77711	20.707	5	2	Median	0.85346	0.69835	NaN	1	0	Median	0.78336	0.93281	25.826	2	2	Median	1.0276	1.0101	NaN	1	0	Median	0.72018	0.73987	NaN	1	0	Median	463020000	237590000	225430000	72771000	35186000	37585000	175050000	87757000	87298000	118570000	58423000	60149000	96618000	56221000	40397000	57707	1421;1272	54363	351305;351306;351307;351308;351309	474006;474007;474008;474009;474010;474011;474012;474013;474014;474015;474016	474009			11	
WDEAFRK	1	Unmodified	950.46102	0.46101552	1294	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	23.19	23.181	3	0.0054677	19031	160511_QHF_FH_JSI12i_3	56.011	45.597			1.1935	1.1759	2.1063	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2372	1.1585	NaN	1	1	Median	1.1513	1.1935	NaN	1	0	Median	338370000	129760000	208610000	0	0	0	0	0	0	133830000	53164000	80669000	204540000	76598000	127940000	57708	1294	54364	351310;351311	474017;474018;474019	474018			3	
WDEMNILATYHPADK	1	Unmodified	1802.8298	0.82977013	1516	P41236	PPP1R2	Protein phosphatase inhibitor 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	74.34	73.362	2;3	8.8933E-05	64343	160511_QHF_FH_JSI11i_2	75.574	69.411			0.99582	1.0463	6.5284	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.94494	1.1507	NaN	1	0	Median	1.0451	1.0499	NaN	1	0	Median	0.90014	1.0121	4.2136	2	1	Median	840620000	468430000	372200000	0	0	0	263760000	153900000	109860000	359200000	200140000	159060000	217660000	114380000	103280000	57709	1516	54365	351312;351313;351314;351315	474020;474021;474022;474023	474022			4	
WDFIHMIQMLYYVK	1	Unmodified	1885.9259	0.92591913	1696	P50135	HNMT	Histamine N-methyltransferase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	100.02	90.681	3	8.6201E-05	52115	160513_QHF_FH_JSI11Kac_6	85.837	76.98			1.0091	1.0904	16.964	3	0	Median	0.95483	0.83061	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2053	1.1343	NaN	1	0	Median	1.0091	1.0904	NaN	1	0	Median	469010000	225330000	243690000	256790000	120730000	136060000	0	0	0	149610000	77076000	72529000	62621000	27519000	35102000	57710	1696	54366	351316;351317;351318	474024;474025;474026;474027	474025			4	
WDFMRPIVLK	1	Unmodified	1303.7111	0.71109897	3924	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	84.854	84.207	3	0.0006452	70647	160511_QHF_FH_JSI10i_3	65.347	55.66			0.81566	0.84846	19.317	4	0	Median	1.0777	0.88952	NaN	1	0	Median	0.68322	0.80929	NaN	1	0	Median	0.97377	0.93012	NaN	1	0	Median	0.5844	0.60519	NaN	1	0	Median	101890000	57885000	44001000	21789000	10084000	11705000	15366000	9421800	5943700	42037000	24711000	17326000	22695000	13668000	9027000	57711	3924	54367	351319;351320;351321;351322	474028;474029;474030;474031;474032;474033;474034;474035;474036;474037;474038	474033			11	
WDGNEMAK	1	Unmodified	949.39637	0.39636635	5110	Q9NXR7	BRE	BRCA1-A complex subunit BRE	yes	yes	0	0	0	0				By MS/MS	14	0							1						1	27.544	19.698	2	0.044589	11975	160513_QHF_FH_JSI12Kac_4	54.157	50.304			1.1647	1.2545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1647	1.2545	NaN	1	1	Median	6168300	3335900	2832400	0	0	0	0	0	0	0	0	0	6168300	3335900	2832400	57712	5110	54368	351323	474039	474039			1	
WDGQETTLVR	0	Unmodified	1203.5884	0.58840088	838	P05413	FABP3	Fatty acid-binding protein, heart	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.6	6.22		2					1	2		1	3	1		45.175	39.62	2	0.0020879	22069	160513_QHF_FH_JSI10Kac_4	87.308	71.105			0.80853	0.76136	28.631	4	3	Linear	1.6004	1.3327	NaN	1	1	Median	0.80853	0.94841	0.099258	2	1	Median	0.65295	0.66105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	56117000	33542000	22575000	1254800	636900	617910	27492000	14984000	12508000	27371000	17921000	9449500	0	0	0	57713	838	54369	351324;351325;351326;351327;351328	474040;474041;474042;474043;474044;474045	474041			6	
WDGSAVK	1	Unmodified	761.3708	0.37080353	2596	Q15005	SPCS2	Signal peptidase complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			14.7	0.471							1	2		1	2			22.259	12.821	2	0.032283	9332	160513_QHF_FH_JSI10Kac_4	60.788	43.861			0.73688	0.88352	16.442	3	0	Plateau	0.87237	0.75163	NaN	1	0	Median	0.62784	0.74957	23.252	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	113420000	58905000	54516000	12491000	5929900	6561300	100930000	52975000	47955000	0	0	0	0	0	0	57714	2596	54370	351329;351330;351331	474046;474047	474047			2	
WDGVPFILR	0	Unmodified	1101.5971	0.59711507	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	3	3	4	89.041	86.138	2	0.00014774	77680	160511_QHF_FH_JSI12i_3	89.55	78.677			0.80144	0.83965	14.112	11	2	Median	1.1273	0.97118	8.1241	3	1	Median	0.72104	0.85181	7.523	2	0	Median	0.78778	0.7746	11.82	3	0	Median	0.73604	0.81879	17.947	3	1	Median	1245600000	643770000	601810000	234400000	105440000	128960000	173160000	97157000	76003000	459410000	244530000	214870000	378610000	196640000	181970000	57715	1000	54371	351332;351333;351334;351335;351336;351337;351338;351339;351340;351341;351342;351343;351344	474048;474049;474050;474051;474052;474053;474054;474055;474056;474057;474058;474059;474060;474061;474062;474063;474064;474065;474066;474067;474068;474069;474070	474066			23	
WDIITRK	1	Unmodified	930.5287	0.52870115	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	37.738	36.956	3	0.0048338	31022	160511_QHF_FH_JSI10i_3	54.549	35.571			1.0981	1.0402	31.713	4	0	Median	1.0701	0.85676	NaN	1	0	Median	1.1268	1.2798	NaN	1	0	Median	1.3564	1.263	NaN	1	0	Median	0.64352	0.66697	NaN	1	0	Median	291610000	131750000	159850000	93081000	37313000	55768000	100500000	46108000	54390000	73426000	33340000	40087000	24600000	14991000	9609800	57716	552	54372	351345;351346;351347;351348	474071;474072;474073;474074	474073			4	
WDKLLLTSTEK	2	Acetyl (K)	1374.7395	0.73948179	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	78.534	67.993	2	0.01977	36099	160513_QHF_FH_JSI11Kac_5	49.5	36.885			0.67276	0.69976	39.344	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53886	0.52982	NaN	1	0	Median	0.83992	0.92422	NaN	1	0	Median	12136000	6804100	5331700	0	0	0	0	0	0	9462500	5241300	4221200	2673400	1562900	1110500	57717	3217	54373	351349;351350	474075;474076	474075	2800		2	
WDLGLNK	1	Unmodified	844.4443	0.44430282	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3									2	2	1	54.65	53.927	2	0.029275	46069	160511_QHF_FH_JSI12i_2	52.683	33.878			0.93789	1.0051	2.9464	5	0	Median	NaN	NaN	NaN	0	0	Median	0.8274	0.99814	0.97802	2	0	Median	1.0386	1.0211	4.7061	2	0	Median	0.93789	1.0386	NaN	1	0	Median	315620000	168860000	146760000	0	0	0	101960000	53583000	48378000	135890000	69245000	66641000	77772000	46028000	31744000	57718	3904	54374	351351;351352;351353;351354;351355	474077;474078;474079;474080;474081	474078			5	
WDLGLNKK	2	Unmodified	972.53927	0.53926584	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	41.293	41.083	3	0.058755	35115	160511_QHF_FH_JSI12i_3	22.086	8.0833			1.4299	1.5291	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4299	1.5291	NaN	1	1	Median	48017000	16880000	31137000	0	0	0	0	0	0	0	0	0	48017000	16880000	31137000	57719	3904	54375	351356	474082	474082			1	
WDLSAQQIEER	0	Unmodified	1373.6575	0.65754307	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		57.759	57.256	2	0.00059428	49547	160511_QHF_FH_JSI11i_2	84.17	73.006			1.3452	1.3599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3452	1.3599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	173240000	88251000	84989000	0	0	0	0	0	0	173240000	88251000	84989000	0	0	0	57720	1787	54376	351357	474083	474083			1	
WDLSPEQIK	1	Unmodified	1114.5659	0.56587452	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			59.519	59.125	2	0.018992	53445	160511_QHF_FH_JSI10i_1	51.066	40.356			0.59954	0.72035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59954	0.72035	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64710000	40961000	23749000	0	0	0	64710000	40961000	23749000	0	0	0	0	0	0	57721	4551	54377	351358	474084	474084			1	
WDMSAENAR	0	Unmodified	1078.4502	0.45019283	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	30.184	29.343	2	0.0094738	24590	160511_QHF_FH_JSI12i_2	51.066	42.726			1.1976	1.2436	30.503	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5517	1.543	NaN	1	0	Median	0.9244	1.0023	NaN	1	0	Median	83526000	36690000	46836000	0	0	0	0	0	0	50765000	22318000	28447000	32761000	14372000	18389000	57722	5330	54378	351359;351360	474085;474086;474087;474088	474085			4	
WDNLIYYALGGHK	1	Unmodified	1548.7725	0.77251325	2647	Q15269	PWP2	Periodic tryptophan protein 2 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3		1	3	2	85.617	81.537	3	0.0022179	75550	160511_QHF_FH_JSI12i_3	49.31	43.595			0.472	0.83841	76.446	6	3	Plateau	NaN	NaN	NaN	0	0	Median	0.72973	0.84587	NaN	1	1	Median	0.41293	0.39989	101	3	2	Plateau	0.51364	0.53344	62.692	2	0	Median	411380000	253140000	158250000	0	0	0	108170000	56566000	51604000	143210000	89163000	54047000	160000000	107410000	52594000	57723	2647	54379	351361;351362;351363;351364;351365;351366	474089;474090;474091;474092;474093;474094;474095;474096	474093			8	
WDPTANEDPEWILVEK	1	Unmodified	1940.9156	0.91560825	2524	Q14257	RCN2	Reticulocalbin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	3	1	92.388	92.152	2	6.3984E-05	83973	160511_QHF_FH_JSI12i_1	91.62	78.853			0.8348	0.93417	14.353	5	4	Median	NaN	NaN	NaN	0	0	Median	0.73449	0.88074	8.3297	2	2	Median	0.99522	0.97497	25.026	2	2	Median	0.91815	0.98003	NaN	1	0	Median	436870000	215130000	221750000	0	0	0	156290000	85050000	71244000	174580000	78539000	96041000	106000000	51537000	54462000	57724	2524	54380	351367;351368;351369;351370;351371;351372	474097;474098;474099;474100;474101;474102;474103	474101			7	
WDQSTFLGR	0	Unmodified	1108.5302	0.53015772	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.9	5.97	1	5	1					3		2	2	2	4	55.075	51.265	2	0.0036856	46259	160511_QHF_FH_JSI12i_2	59.245	0			1.018	1.0738	34.879	10	3	Median	1.2251	1.0488	30.672	2	0	Median	1.0477	1.2705	37.332	2	1	Median	0.95684	0.94807	7.2813	2	0	Median	1.0184	1.1597	48.431	4	2	Median	925560000	420830000	504740000	129770000	52357000	77416000	224350000	106120000	118220000	134200000	63892000	70305000	437240000	198450000	238790000	57725	4503	54381	351373;351374;351375;351376;351377;351378;351379;351380;351381;351382	474104;474105;474106;474107;474108;474109;474110;474111;474112	474104			9	
WDQTADQTPGATPK	1	Unmodified	1514.7001	0.70013617	542	O75533	SF3B1	Splicing factor 3B subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.47	5					1				1	2	2	1	28.476	26.556	2	2.5134E-06	23755	160511_QHF_FH_JSI12i_1	127.56	114.98			1.0935	1.0857	37.239	6	3	Median	1.3504	1.114	NaN	1	0	Median	0.80493	0.95482	56.543	2	2	Median	1.3157	1.2913	52.966	2	1	Median	1.0076	1.058	NaN	1	0	Median	619800000	309550000	310250000	75718000	28577000	47141000	262810000	134930000	127890000	135330000	70471000	64857000	145940000	75579000	70363000	57726	542	54382	351383;351384;351385;351386;351387;351388	474113;474114;474115;474116;474117;474118;474119;474120;474121	474116			9	
WDSEVMASTVVK	1	Unmodified	1350.649	0.64895222	3623	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			59.126	58.25	2	0.0092458	51517	160511_QHF_FH_JSI10i_2	47.894	36.046			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57727	3623	54383	351389	474122	474122			1	
WDTFPLGR	0	Unmodified	990.49232	0.49231565	5639	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	64.618	63.501	2	0.023205	54700	160511_QHF_FH_JSI12i_2	43.246	32.832			0.66911	0.64873	68.823	2	1	Median	0.46385	0.39876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9652	1.0554	NaN	1	0	Median	57005000	33385000	23620000	38702000	24570000	14132000	0	0	0	0	0	0	18302000	8815200	9487200	57728	5639	54384	351390;351391	474123;474124;474125	474124			3	
WDTGENPIYK	1	Unmodified	1221.5666	0.5666028	841	P05556	ITGB1	Integrin beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.89	3.96	4	4					1			2	2	2	3	48.633	46.716	2	0.00036973	40182	160511_QHF_FH_JSI11i_2	76.679	56.159			1.1144	1.1959	26.964	9	3	Median	0.99682	0.83569	3.8043	2	0	Median	0.94338	1.1397	28.453	2	1	Median	1.3313	1.3268	23.037	2	1	Median	1.1177	1.1959	23.518	3	1	Plateau	2043500000	1034100000	1009400000	482110000	252710000	229400000	504890000	241720000	263170000	569670000	281800000	287870000	486810000	257830000	228990000	57729	841	54385	351392;351393;351394;351395;351396;351397;351398;351399;351400	474126;474127;474128;474129;474130;474131;474132;474133;474134;474135;474136;474137;474138;474139;474140	474137			15	
WDVLIQQATQCLNR	0	Unmodified	1743.8726	0.872638	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	80.777	79.8	2	0.0005109	69036	160511_QHF_FH_JSI12i_2	93.345	81.479			0.50213	0.52561	66.853	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1807	1.1316	NaN	1	1	Median	0.75922	0.82566	90.975	2	2	Median	44813000	21746000	23067000	0	0	0	0	0	0	17139000	7053100	10086000	27674000	14693000	12981000	57730	4442	54386	351401;351402;351403	474141;474142;474143	474142			3	
WDVPEAVEWMSK	1	Unmodified	1475.6755	0.67550132	3234	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	95.392	95.018	2	0.0011394	81854	160511_QHF_FH_JSI12i_2	68.536	61.846			1.3047	1.2045	14.925	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.94137	1.2045	NaN	1	1	Median	1.078	1.02	NaN	1	1	Median	1.3047	1.3739	NaN	1	0	Median	42508000	20575000	21933000	0	0	0	13325000	7418000	5906600	15812000	7688600	8123100	13371000	5468400	7903000	57731	3234	54387	351404;351405;351406	474144;474145;474146	474144			3	
WDVSTTK	1	Unmodified	835.40758	0.40758296	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.677	24.15	2	0.056861	21387	160511_QHF_FH_JSI12i_1	46.426	29.499			1.826	1.9004	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.826	1.9004	NaN	1	1	Median	167130000	51334000	115790000	0	0	0	0	0	0	0	0	0	167130000	51334000	115790000	57732	878	54388	351407	474147	474147			1	
WDVTVLELSYHK	1	Unmodified	1488.7613	0.76127986	3090	Q6P1J9	CDC73	Parafibromin	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			80.275	74.679	3	0.0010767	40915	160513_QHF_FH_JSI10Kac_6	64.121	48.181			0.55755	0.6384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.55755	0.6384	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59863000	34740000	25124000	0	0	0	59863000	34740000	25124000	0	0	0	0	0	0	57733	3090	54389	351408	474148	474148			1	
WDYLTQVEK	1	Unmodified	1180.5764	0.57643921	4837	Q9HB71	CACYBP	Calcyclin-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.29	6.23	4	4	1				2	3		3	4	2	5	61.64	57.295	2	3.157E-05	49607	160511_QHF_FH_JSI11i_2	101.72	62.075			0.90546	0.87246	23.494	14	3	Median	1.0198	0.86563	11.049	3	0	Plateau	0.67304	0.81575	18.863	4	1	Median	0.97566	0.98848	10.16	2	0	Median	1.0866	1.1502	32.342	5	2	Median	3999800000	1971000000	2028800000	527550000	251620000	275940000	820050000	445010000	375040000	1431200000	671920000	759240000	1221100000	602490000	618600000	57734	4837	54390	351409;351410;351411;351412;351413;351414;351415;351416;351417;351418;351419;351420;351421;351422	474149;474150;474151;474152;474153;474154;474155;474156;474157;474158;474159;474160;474161;474162;474163;474164;474165;474166;474167;474168;474169;474170;474171;474172	474164			24	
WDYSATEEGMK	1	Unmodified	1315.5391	0.53906742	5360	Q9UK59	DBR1	Lariat debranching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	44.297	43.521	2	0.0019759	38687	160511_QHF_FH_JSI9i_1	74.162	69.863			0.988	0.96055	40.439	5	2	Median	1.1019	0.88853	68.378	2	2	Median	1.2375	1.4365	NaN	1	0	Median	0.988	0.96055	NaN	1	0	Median	0.83152	0.84834	NaN	1	0	Median	355350000	155220000	200130000	82999000	39105000	43894000	86836000	32180000	54657000	99010000	43649000	55361000	86509000	40289000	46220000	57735	5360	54391	351423;351424;351425;351426;351427	474173;474174;474175;474176;474177	474176			5	
WEAAEGLLQEALDK	1	Unmodified	1571.7831	0.78313752	178	O14579	COPE	Coatomer subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.31	0.462		9	4							2	2	3	6	94.454	94.188	2;3	1.4651E-06	81540	160511_QHF_FH_JSI12i_2	133.32	115.51			0.92552	0.89815	35.302	11	2	Median	1.3106	1.1246	29.437	2	0	Median	0.48361	0.60738	52.056	2	1	Median	0.92552	0.89815	12.735	3	0	Median	0.8793	0.94327	37.567	4	1	Median	670080000	343180000	326900000	86891000	44389000	42502000	121630000	71082000	50543000	215500000	101020000	114490000	246060000	126690000	119370000	57736	178	54392	351428;351429;351430;351431;351432;351433;351434;351435;351436;351437;351438;351439;351440	474178;474179;474180;474181;474182;474183;474184;474185;474186;474187;474188;474189;474190;474191;474192;474193;474194;474195;474196;474197;474198;474199	474182			22	
WEAAHVAEQWR	0	Unmodified	1381.6527	0.65273247	788	P01891	HLA-A	HLA class I histocompatibility antigen, A-68 alpha chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									2	3	44.036	43.893	2;3	0.0051266	38759	160511_QHF_FH_JSI11i_3	34.386	25.873			1.1117	1.0306	29.337	5	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1306	1.058	3.707	2	0	Median	0.86417	0.95747	40.915	3	2	Median	256520000	128400000	128120000	0	0	0	0	0	0	146090000	71262000	74832000	110420000	57135000	53289000	57737	788	54393	351441;351442;351443;351444;351445	474200;474201;474202;474203;474204	474201			4	
WEAFGLR	0	Unmodified	877.44464	0.44463717	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		56.169	56.169	2	0.022138	49815	160511_QHF_FH_JSI11i_3	50.966	32.161			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57738	4997	54394	351446	474205	474205			1	
WEAVDESELEAQAVTTSK	1	Unmodified	1991.9324	0.93238053	238	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	4									1		2	1	67.387	66.773	2	6.4476E-11	60740	160511_QHF_FH_JSI11i_1	148.72	135.95			1.1456	1.1181	35.278	4	4	Median	0.91616	0.74717	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.186	1.1529	38.93	2	2	Median	1.4326	1.4279	NaN	1	1	Median	66832000	32031000	34801000	18292000	11573000	6719600	0	0	0	32209000	13650000	18559000	16331000	6808000	9522600	57739	238	54395	351447;351448;351449;351450	474206;474207;474208;474209	474207			4	
WEDAIPLALK	1	Unmodified	1154.6336	0.63356015	943	P09960	LTA4H	Leukotriene A-4 hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.707	2	4	2							2	3	2	1	78.46	77.643	2	0.00059699	68953	160511_QHF_FH_JSI10i_2	70.919	52.883			0.9626	0.88342	13.253	8	0	Median	1.0001	0.84904	3.9469	2	0	Median	0.70098	0.7954	7.667	3	0	Median	0.99678	0.97462	4.6304	2	0	Median	1.0284	1.1535	NaN	1	0	Median	875690000	460280000	415420000	122890000	61044000	61849000	257050000	149650000	107400000	334110000	164840000	169260000	161640000	84737000	76904000	57740	943	54396	351451;351452;351453;351454;351455;351456;351457;351458	474210;474211;474212;474213;474214;474215;474216;474217;474218;474219;474220	474219			11	
WEDAQITLLK	1	Unmodified	1215.6499	0.6499385	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	69.892	68.97	2	0.0013443	59353	160511_QHF_FH_JSI12i_2	74.464	61.428			0.76108	0.82503	8.4521	3	0	Plateau	0.84717	0.71993	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81035	0.84043	NaN	1	0	Median	0.74253	0.82503	NaN	1	0	Median	222950000	129720000	93229000	55030000	30581000	24448000	0	0	0	78730000	44900000	33830000	89186000	54236000	34951000	57741	444	54397	351459;351460;351461	474221;474222;474223;474224	474222			2	
WEDRGPSGQGQGQFLIQQVTLK	1	Unmodified	2471.2557	0.25572077	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			76.935	75.519	3	0.042074	63273	160511_QHF_FH_JSI10i_3	27.904	19.716			0.71695	0.80612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.71695	0.80612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22908000	14054000	8854400	0	0	0	22908000	14054000	8854400	0	0	0	0	0	0	57742	2466	54398	351462	474225	474225			1	
WEESGPQFITNSEEVR	0	Unmodified	1906.8697	0.86972069	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	62.189	61.443	2	5.8365E-06	54368	160511_QHF_FH_JSI10i_2	133.71	127.76			1.1557	1.1568	12.379	6	0	Median	1.3123	1.1414	NaN	1	0	Median	1.1044	1.3255	17.343	2	0	Median	1.1929	1.1819	9.8109	2	0	Median	0.94568	1.0654	NaN	1	0	Median	335050000	171900000	163160000	31890000	13656000	18234000	103850000	54605000	49244000	130510000	65646000	64863000	68806000	37991000	30815000	57743	2379	54399	351463;351464;351465;351466;351467;351468	474226;474227;474228;474229;474230;474231;474232;474233;474234;474235;474236	474236			11	
WEFKHPQPFLR	1	Acetyl (K)	1525.783	0.78301836	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1			By MS/MS	By matching	16	0									2			1	1	76.169	66.785	3	0.012876	36382	160513_QHF_FH_JSI11Kac_6	38.021	29.508			0.4873	0.49052	50.124	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.36007	0.34413	NaN	1	0	Median	0.65947	0.69917	NaN	1	0	Median	113080000	74835000	38245000	0	0	0	0	0	0	82122000	60627000	21495000	30958000	14208000	16750000	57744	878	54400	351469;351470	474237	474237	595		1	
WEFPNFNSR	0	Unmodified	1195.5411	0.54105675	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0		By MS/MS		By matching	3	0			2								1		1	72.91	72.037	2	0.0058526	60434	160511_QHF_FH_JSI10i_3	58.426	52.56			0.82611	0.88803	5.334	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75064	0.85516	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90916	0.92216	NaN	1	0	Median	198610000	104500000	94107000	0	0	0	156910000	82143000	74763000	0	0	0	41700000	22356000	19344000	57745	3955	54401	351471;351472	474238;474239;474240	474239			3	
WEGLVYAPPGK	1	Unmodified	1215.6288	0.62880913	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.2	1	2					1	4	2	2	1	2	5	68.282	60.166	2	0.00034904	51570	160511_QHF_FH_JSI12i_2	74.165	58.575			1.0181	1.064	13.62	8	1	Median	1.0502	0.87114	NaN	1	0	Median	0.86084	1.0204	NaN	1	0	Median	1.087	1.0727	16.552	2	1	Median	1.0635	1.1549	10.576	4	0	Median	661330000	331510000	329820000	2169200	1185800	983370	3610400	1894000	1716400	382960000	196080000	186880000	272590000	132350000	140240000	57746	5542	54402	351473;351474;351475;351476;351477;351478;351479;351480;351481;351482	474241;474242;474243;474244;474245;474246;474247;474248;474249;474250;474251	474242			11	
WEKVQQLVPK	2	Acetyl (K)	1295.7238	0.72377215	361	O43707	ACTN4	Alpha-actinin-4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		72.17	61.247	2	0.0055044	33415	160513_QHF_FH_JSI11Kac_4	67.563	55.337			0.90454	0.90712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90454	0.90712	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	3835300	2110500	1724800	0	0	0	0	0	0	3835300	2110500	1724800	0	0	0	57747	361	54403	351483	474252	474252	184;185		1	
WELLQQVDTSTR	0	Unmodified	1474.7416	0.74160705	810	P04264;CON__P04264	KRT1	Keratin, type II cytoskeletal 1	yes	no	0	0	0	0	By MS/MS				2	0		1								1				69.462	68.577	2	0.00075107	60408	160511_QHF_FH_JSI9i_2	68.069	42.632		+	0.44294	0.37438	NaN	1	0	Median	0.44294	0.37438	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34511000	25409000	9102300	34511000	25409000	9102300	0	0	0	0	0	0	0	0	0	57748	810	54404	351484	474253	474253			1	
WELNPEIVAR	0	Unmodified	1225.6455	0.64552182	4544	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	70.319	69.429	2	0.0025974	60679	160511_QHF_FH_JSI11i_2	68.456	60.516			0.94426	0.9646	5.5644	4	0	Median	1.0435	0.94216	NaN	1	0	Median	0.73611	0.89814	NaN	1	0	Median	0.99361	1.0202	NaN	1	0	Median	0.89737	0.98757	NaN	1	0	Median	252860000	132980000	119880000	47006000	25685000	21321000	51788000	27415000	24373000	94113000	50487000	43626000	59958000	29394000	30564000	57749	4544	54405	351485;351486;351487;351488	474254;474255;474256;474257	474256			4	
WELNSGDGAFYGPK	1	Unmodified	1539.6994	0.69940789	1282	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.91	6.15	6	6	4				1	4	2	5	6	5	7	68.721	65.133	2;3	1.3672E-23	34216	160513_QHF_FH_JSI11Kac_5	147.62	130.19			0.98284	1.0376	16.542	23	4	Median	1.2286	1.0345	9.0706	5	1	Median	0.89025	1.0803	14.796	6	1	Median	1.0665	0.99645	19.452	5	1	Median	0.93942	1.0376	21.812	7	1	Median	5708100000	2919800000	2788200000	842610000	412490000	430120000	1749200000	1066800000	682480000	1873900000	823810000	1050100000	1242300000	616800000	625490000	57750	1282	54406	351489;351490;351491;351492;351493;351494;351495;351496;351497;351498;351499;351500;351501;351502;351503;351504;351505;351506;351507;351508;351509;351510;351511	474258;474259;474260;474261;474262;474263;474264;474265;474266;474267;474268;474269;474270;474271;474272;474273;474274;474275;474276;474277;474278;474279;474280;474281;474282;474283;474284;474285;474286;474287;474288;474289;474290;474291;474292;474293;474294;474295;474296;474297;474298;474299;474300;474301;474302;474303;474304	474291			47	
WELNTYLYAPK	1	Unmodified	1396.7027	0.70270235	421	O60502	MGEA5	Protein O-GlcNAcase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	1	2	2	2	79.746	75.796	2	5.8919E-07	40451	160513_QHF_FH_JSI10Kac_6	110.47	82.075			1.4699	1.5428	25.371	7	2	Median	3.088	2.6243	NaN	1	0	Median	1.2787	1.5241	25.942	2	0	Median	1.6058	1.5697	25.218	2	2	Median	1.3855	1.4923	4.7113	2	0	Median	599230000	236370000	362860000	28998000	9498300	19500000	191390000	84424000	106970000	141700000	46980000	94719000	237140000	95468000	141680000	57751	421	54407	351512;351513;351514;351515;351516;351517;351518	474305;474306;474307;474308;474309;474310;474311;474312	474311			8	
WELYIPPK	1	Unmodified	1044.5644	0.56441796	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		70.484	69.874	2	0.052614	61143	160511_QHF_FH_JSI11i_2	36.701	26.233			0.78559	0.79253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78559	0.79253	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18799000	10902000	7896600	0	0	0	0	0	0	18799000	10902000	7896600	0	0	0	57752	2216	54408	351519	474313	474313			1	
WEPYDPEK	1	Unmodified	1062.4658	0.46582612	2529	Q14320	FAM50A	Protein FAM50A	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.807	40.362	2	0.0061634	36241	160511_QHF_FH_JSI10i_1	63.419	47.216			1.0439	1.0937	8.7127	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.9599	1.1128	NaN	1	0	Median	1.1352	1.0937	NaN	1	0	Median	0.90649	0.94941	NaN	1	1	Median	432560000	206880000	225680000	0	0	0	151130000	66799000	84331000	157440000	78333000	79107000	123990000	61750000	62238000	57753	2529	54409	351520;351521;351522	474314;474315;474316;474317;474318	474318			5	
WEQIEGNSK	1	Unmodified	1089.5091	0.50908792	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2								1	2	1	1	19.317	18.809	2	0.0046873	16005	160511_QHF_FH_JSI11i_1	66.27	56.682			1.3434	1.118	34.701	5	2	Median	1.3434	1.118	NaN	1	0	Median	0.84807	1.0109	0.43057	2	0	Median	1.8838	1.8002	NaN	1	1	Median	2.0577	2.1023	NaN	1	1	Median	263040000	114700000	148340000	34764000	17016000	17749000	98555000	55151000	43404000	72736000	22367000	50369000	56988000	20168000	36820000	57754	2294	54410	351523;351524;351525;351526;351527	474319;474320;474321	474319			3	
WEQQVSAADGKPGR	1	Acetyl (K)	1569.7536	0.75356872	3164	Q6W2J9	BCOR	BCL-6 corepressor	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	42.49	32.544	2	0.007088	19195	160513_QHF_FH_JSI12Kac_4	66.262	50.372			0.4621	0.48626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4621	0.48626	NaN	1	1	Median	1574800	1290700	284160	0	0	0	0	0	0	0	0	0	1574800	1290700	284160	57755	3164	54411	351528	474322	474322	2785		1	
WEQVPLIK	1	Unmodified	1011.5753	0.57531699	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1.67	0.471	2	4								1	2	2	1	59.274	58.521	2	0.0061156	50740	160511_QHF_FH_JSI11i_2	70.912	56.755			0.85463	0.90867	18.423	6	0	Median	0.98885	0.86287	NaN	1	0	Median	0.65295	0.78362	20.202	2	0	Median	1.0749	1.0518	19.948	2	0	Median	0.79999	0.91855	NaN	1	0	Median	287600000	152290000	135310000	42165000	18722000	23444000	69335000	40701000	28634000	122080000	65858000	56223000	54014000	27008000	27006000	57756	1241	54412	351529;351530;351531;351532;351533;351534	474323;474324;474325	474325			3	
WETPYMHALAAAASSK	1	Unmodified	1732.8243	0.82429083	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	3.43		3	10						1	5	4	3	2	71.967	70.443	2;3	6.1015E-06	58141	160511_QHF_FH_JSI9i_3	103.5	94.213			0.88397	0.99322	23.518	12	4	Median	1.4761	1.2263	36.86	4	3	Median	0.86774	1.017	1.6563	3	0	Plateau	0.91883	0.87996	23.449	3	1	Median	0.87209	0.89293	2.9209	2	0	Median	2928100000	1550800000	1377300000	309890000	146000000	163890000	392650000	210720000	181930000	747080000	406540000	340540000	1478500000	787530000	690920000	57757	2532	54413	351535;351536;351537;351538;351539;351540;351541;351542;351543;351544;351545;351546;351547;351548	474326;474327;474328;474329;474330;474331;474332;474333;474334;474335;474336;474337;474338;474339;474340;474341;474342;474343;474344;474345;474346;474347;474348;474349	474337			24	
WETPYMHALAAAASSK	1	Oxidation (M)	1748.8192	0.81920545	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	57.022	56.773	3	0.04538	48717	160511_QHF_FH_JSI12i_3	31.883	25.002			0.70473	0.71996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70473	0.71996	NaN	1	1	Median	97435000	56704000	40731000	0	0	0	0	0	0	0	0	0	97435000	56704000	40731000	57758	2532	54413	351549	474350	474350			1	
WEVADLQPQLK	1	Unmodified	1325.698	0.69795133	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		72.124	71.776	2	0.0024558	65287	160511_QHF_FH_JSI11i_1	72.325	54.429			0.97099	0.9313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97099	0.9313	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31584000	13324000	18260000	0	0	0	0	0	0	31584000	13324000	18260000	0	0	0	57759	1216	54414	351550	474351	474351			1	
WEVEEMK	1	Unmodified	949.42152	0.42151847	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							3	2	2	2	40.865	39.923	2	0.0093343	34323	160511_QHF_FH_JSI11i_2	79.597	68.229			1.2776	1.1811	41.689	8	3	Median	1.851	1.5746	58.894	3	2	Median	0.9474	1.1439	NaN	1	0	Median	1.4944	1.489	28.241	2	1	Median	0.95922	1.0393	10.732	2	0	Median	1704000000	801590000	902390000	338500000	131790000	206720000	238480000	125270000	113210000	700730000	318830000	381900000	426260000	225690000	200560000	57760	1299	54415	351551;351552;351553;351554;351555;351556;351557;351558;351559	474352;474353;474354;474355;474356;474357;474358;474359;474360;474361;474362;474363;474364	474363			13	
WEVIANYMNIHSSSGVK	1	Unmodified	1933.9356	0.93563219	4282	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			74.726	68.216	3	3.2722E-05	37136	160513_QHF_FH_JSI10Kac_6	80.859	70.391			0.73043	0.86952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73043	0.86952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	158090000	103860000	54224000	0	0	0	158090000	103860000	54224000	0	0	0	0	0	0	57761	4282	54416	351560	474365	474365			1	
WEVLIGSTHILTPQK	1	Unmodified	1720.9512	0.9512059	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			78.971	71.782	3	0.00026515	39779	160513_QHF_FH_JSI10Kac_6	70.98	59.718			0.80455	0.81216	28.803	2	1	Median	1.1628	0.99562	NaN	1	1	Median	0.55669	0.6625	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	264170000	160290000	103870000	55732000	27322000	28410000	208430000	132970000	75463000	0	0	0	0	0	0	57762	1962	54417	351561;351562	474366;474367;474368	474367			3	
WEWLVNQHR	0	Unmodified	1266.6258	0.62578944	4502	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			56.142	54.585	3	0.016767	45662	160511_QHF_FH_JSI10i_3	30.141	23.907			1.7633	1.7342	83.914	2	2	Median	3.7647	3.139	NaN	1	1	Median	0.82591	0.95809	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25739000	7617500	18121000	12748000	1143100	11605000	12991000	6474400	6516900	0	0	0	0	0	0	57763	4502	54418	351563;351564;351565	474369;474370;474371	474370			3	
WEYMHSPSENSK	1	Unmodified	1493.6245	0.62452839	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.691	27.669	3	0.0027964	23758	160511_QHF_FH_JSI11i_3	46.069	42.101			1.251	1.2175	18.564	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.163	1.0677	NaN	1	0	Median	1.3457	1.3883	NaN	1	0	Median	170540000	70448000	100090000	0	0	0	0	0	0	71809000	34367000	37442000	98728000	36081000	62647000	57764	1456	54419	351566;351567	474372;474373	474372			2	
WEYVPLGPFLGK	1	Unmodified	1404.7442	0.74417324	1104	P16930	FAH	Fumarylacetoacetase	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.9	100.78	2	0.0048822	88468	160511_QHF_FH_JSI11i_2	63.076	50.12			1.212	1.3823	32.675	4	1	Median	1.793	1.5845	NaN	1	0	Median	1.3816	1.6899	NaN	1	0	Median	0.83224	0.82397	NaN	1	1	Median	1.0631	1.2059	NaN	1	0	Median	132200000	65417000	66783000	16406000	5419300	10987000	38457000	17128000	21329000	42497000	22798000	19699000	34839000	20072000	14767000	57765	1104	54420	351568;351569;351570;351571	474374;474375;474376	474376			1	
WFAFFKYK	2	Unmodified	1135.5855	0.58548775	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			75.974	69.602	3	0.058934	37980	160513_QHF_FH_JSI10Kac_6	37.727	31.726			0.19779	0.23704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.19779	0.23704	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19868000	16664000	3203900	0	0	0	19868000	16664000	3203900	0	0	0	0	0	0	57766	1806	54421	351572	474377	474377			1	
WFATTDWIAIYQR	0	Unmodified	1669.8253	0.8252771	1121;1215	P22694;P17612	PRKACB;PRKACA	cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	6.29		1	2						6	3	1	2	3	92.011	86.307	2;3	1.0372E-24	44682	160513_QHF_FH_JSI11Kac_6	208.75	196.69			1.012	1.0148	31.491	9	1	Median	1.3253	1.1521	44.043	3	1	Plateau	0.99277	1.1866	NaN	1	0	Median	1.0001	0.94664	0.54579	2	0	Median	0.88364	0.92426	5.6942	3	0	Median	1625500000	775210000	850280000	362660000	138620000	224040000	670320000	329010000	341310000	298210000	148220000	149990000	294310000	159360000	134950000	57767	1215;1121	54422	351573;351574;351575;351576;351577;351578;351579;351580;351581	474378;474379;474380;474381;474382;474383;474384;474385;474386;474387;474388;474389;474390;474391;474392	474381			15	
WFDFPFTR	0	Unmodified	1114.5236	0.52361577	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	89.771	89.727	2	0.058017	77912	160511_QHF_FH_JSI12i_3	39.022	36.67			1.0518	1.0232	0.31707	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1141	1.0209	NaN	1	0	Median	0.99301	1.0255	NaN	1	0	Median	53555000	25780000	27775000	0	0	0	0	0	0	28192000	13751000	14441000	25362000	12029000	13333000	57768	2947	54423	351582;351583	474393;474394	474394			2	
WFEEASEVAQSNR	0	Unmodified	1551.6954	0.69538514	2873	Q58WW2	DCAF6	DDB1- and CUL4-associated factor 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.748	42.366	2	0.012009	36300	160511_QHF_FH_JSI12i_2	55.452	45.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7117600	0	7117600	0	0	0	0	0	0	0	0	0	7117600	0	7117600	57769	2873	54424	351584	474395	474395			1	
WFEENASQSTVK	1	Unmodified	1424.6572	0.65720872	2324	Q12905	ILF2	Interleukin enhancer-binding factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	3.66	5	10	5				1	1		6	5	6	5	35.121	33.323	2	2.8005E-14	27246	160511_QHF_FH_JSI11i_2	134.68	112.59			0.96515	0.96504	46.338	16	11	Median	1.2578	1.0488	59.736	6	5	Median	0.9106	1.0726	48.689	5	4	Median	0.65079	0.64592	28.097	2	1	Median	0.99646	1.0444	9.0216	3	1	Plateau	3448800000	1845600000	1603300000	718500000	318360000	400140000	1369600000	787700000	581870000	741130000	396720000	344410000	619630000	342790000	276840000	57770	2324	54425	351585;351586;351587;351588;351589;351590;351591;351592;351593;351594;351595;351596;351597;351598;351599;351600;351601;351602;351603;351604;351605;351606	474396;474397;474398;474399;474400;474401;474402;474403;474404;474405;474406;474407;474408;474409;474410;474411;474412;474413;474414;474415;474416;474417;474418;474419;474420;474421;474422;474423;474424;474425	474418			30	
WFGFLEAQQAFQSVGTK	1	Unmodified	1942.9577	0.95774784	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			4							1	1	1	1	101.12	101.03	2	1.0828E-30	83637	160511_QHF_FH_JSI10i_3	194.06	177.44			0.84124	0.92608	34.889	4	0	Median	1.7768	1.4664	NaN	1	0	Median	0.86442	1.009	NaN	1	0	Median	0.69684	0.6362	NaN	1	0	Median	0.81868	0.84994	NaN	1	0	Median	299880000	167610000	132270000	27981000	9793500	18187000	63209000	35095000	28114000	92140000	55701000	36440000	116550000	67022000	49530000	57771	878	54426	351607;351608;351609;351610	474426;474427;474428	474426			3	
WFGMFANLPIGIPYSISFK	1	Oxidation (M)	2203.1176	0.1176193	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	1	0		By MS/MS	By MS/MS		16	0									3		1	2		97.766	89.584	2;3	9.6389E-34	50565	160513_QHF_FH_JSI11Kac_6	168	156.08			1.1148	1.205	18.318	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1735	1.3912	NaN	1	0	Median	1.3156	1.2376	24.082	2	0	Median	NaN	NaN	NaN	0	0	Median	442120000	233990000	208130000	0	0	0	164790000	74223000	90568000	277320000	159760000	117560000	0	0	0	57772	251	54427	351611;351612;351613	474429;474430;474431;474432;474433	474431		106	5	
WFGMFANLPIGIPYSISFK	1	Unmodified	2187.1227	0.12270468	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	2	1	99.363	91.074	2;3	1.3067E-25	51964	160513_QHF_FH_JSI9Kac_6	204.35	189.56			0.96431	0.9433	15.139	6	1	Median	1.4037	1.1953	16.413	2	0	Median	0.79813	0.94133	1.3435	2	0	Median	0.96431	0.91454	3.3294	2	1	Median	NaN	NaN	NaN	0	0	Median	4498100000	2432700000	2065300000	922330000	382320000	540010000	2441200000	1451400000	989870000	819320000	459730000	359590000	315200000	139340000	175870000	57773	251	54427	351614;351615;351616;351617;351618;351619;351620	474434;474435;474436;474437;474438;474439;474440;474441;474442;474443;474444;474445	474437			12	
WFGMFANLPIGIPYSISFKR	1	Unmodified	2343.2238	0.22381571	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			96.99	90.141	3;4	1.769E-06	52936	160513_QHF_FH_JSI10Kac_6	81.665	73.576			0.52858	0.63217	51.522	3	1	Median	1.466	1.2707	NaN	1	1	Median	0.46091	0.54214	21.728	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	872330000	525840000	346480000	245220000	92858000	152360000	627110000	432990000	194120000	0	0	0	0	0	0	57774	251	54428	351621;351622;351623	474446;474447;474448	474447			3	
WFGMFANLPIGIPYSISFKR	1	Oxidation (M)	2359.2187	0.21873033	251	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			94.698	88.977	3	1.97E-06	51187	160513_QHF_FH_JSI10Kac_6	81.967	70.345			1.0548	1.2487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0548	1.2487	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	100470000	60878000	39594000	0	0	0	100470000	60878000	39594000	0	0	0	0	0	0	57775	251	54428	351624	474449	474449		106	1	
WFGSDVLQQPLPSMPAK	1	Unmodified	1899.9553	0.955305	4949	Q9NRA8	EIF4ENIF1	Eukaryotic translation initiation factor 4E transporter	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		88.284	87.728	3	0.056796	77223	160511_QHF_FH_JSI11i_2	24.053	10.626			5.1949	5.0901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	5.1949	5.0901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	11198000	1375700	9822200	0	0	0	0	0	0	11198000	1375700	9822200	0	0	0	57776	4949	54429	351625	474450	474450			1	
WFHPNITGVEAENLLLTR	0	Unmodified	2109.1007	0.10072368	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								3	1	1	90.952	90.92	3	3.1353E-06	78788	160511_QHF_FH_JSI12i_3	93.684	84.865			0.94891	0.92258	0.70374	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9926	0.92719	NaN	1	0	Median	0.90714	0.918	NaN	1	0	Median	168620000	82065000	86556000	0	0	0	0	0	0	117280000	56858000	60425000	51338000	25207000	26131000	57777	2239	54430	351626;351627;351628;351629;351630	474451;474452;474453;474454;474455	474455			4	
WFLDALEK	1	Unmodified	1020.528	0.52803245	2343	Q13042	CDC16	Cell division cycle protein 16 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.755	77.553	2	0.032995	67157	160511_QHF_FH_JSI12i_2	49.418	32.032			0.96323	1.0535	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96323	1.0535	NaN	1	1	Median	19170000	10976000	8193800	0	0	0	0	0	0	0	0	0	19170000	10976000	8193800	57778	2343	54431	351631	474456	474456			1	
WFLTCINQPQFR	0	Unmodified	1608.7871	0.78711746	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.54		2	4						4	2	3	3	2	85.208	81.55	2	1.7057E-31	42377	160513_QHF_FH_JSI10Kac_6	187.22	161.1			0.92318	0.99845	18.526	10	2	Median	1.2008	1.01	15.041	2	0	Median	0.839	0.9847	12.03	3	1	Plateau	0.82888	0.8016	7.8804	3	1	Median	1.1274	1.162	14.062	2	0	Median	2732200000	1400700000	1331500000	384360000	179740000	204620000	1269000000	682910000	586080000	652630000	364650000	287980000	426240000	173430000	252810000	57779	1284	54432	351632;351633;351634;351635;351636;351637;351638;351639;351640;351641	474457;474458;474459;474460;474461;474462;474463;474464;474465;474466;474467;474468;474469;474470;474471;474472;474473	474473			17	
WFNGQPIHAELSPVTDFR	0	Unmodified	2113.0381	0.038123426	956	P0DN76;Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		5	10							4	4	3	4	78.921	78.209	2;3	2.0178E-07	69422	160511_QHF_FH_JSI11i_3	113.56	104.3			1.2499	1.1678	16.739	10	3	Median	1.5013	1.2914	14.563	2	0	Median	1.1052	1.2973	23.164	4	2	Median	1.0471	1.1446	12.306	3	1	Plateau	1.1206	1.1706	NaN	1	0	Median	1261300000	608760000	652490000	81224000	35972000	45252000	174800000	91172000	83624000	477850000	228300000	249560000	527380000	253320000	274060000	57780	956	54433	351642;351643;351644;351645;351646;351647;351648;351649;351650;351651;351652;351653;351654;351655;351656	474474;474475;474476;474477;474478;474479;474480;474481;474482;474483;474484;474485;474486;474487;474488;474489;474490;474491;474492	474475			18	
WFNISFDIFGR	0	Unmodified	1400.6877	0.68772099	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	96.237	87.83	2	0.00010838	49542	160513_QHF_FH_JSI9Kac_6	91.085	76.679			0.9913	1.0075	2.1995	4	0	Median	1.2162	1.0268	NaN	1	0	Median	0.87052	1.0259	NaN	1	0	Median	1.0438	0.98946	NaN	1	0	Median	0.94148	0.98663	NaN	1	0	Median	754180000	371600000	382580000	126700000	52325000	74371000	370780000	203760000	167030000	132060000	50441000	81616000	124640000	65080000	59564000	57781	1872	54434	351657;351658;351659;351660	474493;474494;474495;474496;474497	474494			5	
WFNTILDDSHLLVHCYLSNLVR	0	Unmodified	2714.3639	0.36389102	408	O60306	AQR	Intron-binding protein aquarius	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.774	86.374	4	0.023263	48893	160513_QHF_FH_JSI11Kac_6	31.473	28.259			0.87384	0.83203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87384	0.83203	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18215000	11279000	6936100	0	0	0	0	0	0	18215000	11279000	6936100	0	0	0	57782	408	54435	351661	474498	474498			0	
WFPAVCAHSK	1	Unmodified	1201.5702	0.57024839	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	40.988	40.275	2;3	0.00043608	33754	160511_QHF_FH_JSI10i_3	63.408	63.408			0.87017	1.0082	28.848	7	3	Median	1.2909	1.0327	NaN	1	0	Median	0.80034	0.92809	11.706	2	1	Median	0.79775	0.74747	8.8225	2	1	Median	1.3341	1.4482	14.886	2	1	Median	1108200000	529830000	578330000	150240000	66124000	84120000	206060000	100580000	105490000	300110000	155090000	145020000	451750000	208040000	243710000	57783	1857	54436	351662;351663;351664;351665;351666;351667;351668	474499;474500;474501;474502;474503;474504;474505;474506;474507;474508;474509	474502			11	
WFPFPYPWR	0	Unmodified	1294.6287	0.62874955	3155	Q6UWU4	C6orf89	Bombesin receptor-activated protein C6orf89	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	92.683	84.696	2	0.00049376	45438	160513_QHF_FH_JSI12Kac_6	83.614	72.021			0.93282	1.0332	22.849	3	0	Median	1.6775	1.4249	NaN	1	0	Median	0.88512	1.0332	NaN	1	0	Median	0.93282	0.91582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	185740000	93073000	92662000	42325000	16822000	25503000	117380000	64922000	52455000	26032000	11329000	14704000	0	0	0	57784	3155	54437	351669;351670;351671;351672;351673	474510;474511;474512;474513;474514;474515	474513			6	
WFPYFLVR	0	Unmodified	1126.5964	0.59638679	4785	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.962	81.667	2	0.0026311	47105	160513_QHF_FH_JSI10Kac_6	89.673	58.384			1.0666	1.0083	19.641	4	1	Median	1.1761	0.99475	NaN	1	1	Median	0.63223	0.75612	NaN	1	0	Median	1.2532	1.2159	NaN	1	0	Median	0.9672	1.0221	NaN	1	0	Median	313430000	169280000	144140000	57083000	23719000	33364000	155270000	102280000	52996000	69523000	28959000	40564000	31548000	14331000	17217000	57785	4785	54438	351674;351675;351676;351677	474516;474517;474518;474519;474520;474521;474522	474521			7	
WFQPAIPSWLQK	1	Unmodified	1499.7925	0.79252041	3202	Q70J99	UNC13D	Protein unc-13 homolog D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		96.355	95.937	2	0.0071688	79799	160511_QHF_FH_JSI10i_3	51.436	42.253			0.88252	0.85647	13.265	3	0	Plateau	1.2604	1.0672	NaN	1	0	Median	0.81028	0.94369	NaN	1	0	Median	0.88252	0.81871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	41829000	19762000	22067000	11355000	4927300	6427700	14782000	6603500	8178500	15692000	8231100	7460800	0	0	0	57786	3202	54439	351678;351679;351680	474523;474524;474525	474524			3	
WFQQKYDGIILPGK	2	Acetyl (K)	1733.9141	0.91409211	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									3			2	1	82.584	73.227	2;3	2.7575E-16	40312	160513_QHF_FH_JSI11Kac_6	138.24	116.49			0.14826	0.14441	106.03	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14826	0.14441	106.03	2	1	Median	NaN	NaN	NaN	0	0	Median	91801000	76969000	14831000	0	0	0	0	0	0	85993000	71162000	14831000	5807500	5807500	0	57787	2038	54440	351681;351682;351683	474526;474527;474528	474526	2091		3	
WFSESGK	1	Unmodified	839.38137	0.38136821	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0		By MS/MS		By matching	2	0		2									1		1	17.732	16.858	2	0.045437	14336	160511_QHF_FH_JSI10i_2	44.692	30.279			0.70303	0.82237	2.9204	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68042	0.83953	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72639	0.80556	NaN	1	0	Median	362410000	197210000	165200000	0	0	0	186460000	102730000	83728000	0	0	0	175950000	94476000	81472000	57788	2692	54441	351684;351685	474529;474530	474530			2	
WFSESGKLVTK	2	Acetyl (K)	1322.6871	0.68705229	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		62.44	52.741	2	0.0044174	28582	160513_QHF_FH_JSI11Kac_6	72.922	57.34			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8996500	8996500	0	0	0	0	0	0	0	8996500	8996500	0	0	0	0	57789	2692	54442	351686	474531	474531	2633		1	
WFSIQNNQLVYQK	1	Unmodified	1666.8467	0.84674083	2620	Q15057	ACAP2	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	74.346	73.574	2	6.3491E-10	63909	160511_QHF_FH_JSI12i_3	113.62	98.943			1.1759	1.0636	20.409	6	5	Median	1.3471	1.1242	7.4474	2	2	Median	1.1801	1.3892	NaN	1	1	Median	1.034	0.95264	15.183	2	2	Median	0.82487	0.80076	NaN	1	0	Median	151280000	61173000	90107000	28761000	10881000	17881000	16013000	4971100	11042000	62415000	25425000	36990000	44091000	19896000	24195000	57790	2620	54443	351687;351688;351689;351690;351691;351692;351693;351694	474532;474533;474534;474535;474536;474537;474538;474539	474539			8	
WFSTPLLLEASEFLAEDSQEK	1	Unmodified	2439.1846	0.18457247	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		102.82	102.82	3	0.00093105	91892	160511_QHF_FH_JSI11i_3	58.914	22.748			1.4829	1.3742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4829	1.3742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53525000	22254000	31272000	0	0	0	0	0	0	53525000	22254000	31272000	0	0	0	57791	5135	54444	351695	474540	474540			0	
WFTDLSVLQLNR	0	Unmodified	1490.7882	0.78816332	4181	Q96N67	DOCK7	Dedicator of cytokinesis protein 7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	95.861	95.864	2	0.0016573	85400	160511_QHF_FH_JSI11i_3	74.162	65.942			1.5179	1.5131	28.453	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3155	1.2374	NaN	1	1	Median	1.7514	1.8504	NaN	1	1	Median	25442000	9048500	16393000	0	0	0	0	0	0	12175000	4157300	8017800	13267000	4891300	8375500	57792	4181	54445	351696;351697	474541;474542;474543;474544	474541			4	
WFTDTSIILFLNKK	2	Unmodified	1724.9501	0.95014327	818;2049	P04899;P63096	GNAI2;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1	no	no	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		95.419	92.559	3	0.00057413	90163	160511_QHF_FH_JSI11i_3	69.108	57.846			0.35546	0.36562	47.337	2	2	Median	NaN	NaN	NaN	0	0	Median	0.22377	0.26161	NaN	1	1	Median	0.56463	0.51097	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	248330000	192400000	55930000	0	0	0	196180000	154940000	41242000	52144000	37456000	14688000	0	0	0	57793	818;2049	54446	351698;351699	474545;474546	474545			2	
WFTETSIILFLNK	1	Unmodified	1610.8708	0.87083031	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	95.962	87.555	2;3	5.5936E-13	51788	160513_QHF_FH_JSI10Kac_6	111.63	75.893			0.9889	1.0912	33.914	8	1	Median	0.80259	0.69968	12.929	2	1	Median	0.87018	1.0309	16.986	2	0	Median	1.5411	1.4799	36.645	2	0	Median	1.1197	1.1828	17.848	2	0	Median	1815000000	869390000	945580000	442520000	244630000	197890000	407640000	214910000	192730000	381930000	156460000	225470000	582880000	253390000	329490000	57794	915	54447	351700;351701;351702;351703;351704;351705;351706;351707;351708	474547;474548;474549;474550;474551;474552;474553;474554;474555;474556;474557;474558;474559;474560	474560			14	
WFTETSIILFLNKK	2	Unmodified	1738.9658	0.96579333	915	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	3.9			1						9	2	2	2	4	90.84	82.53	2;3	3.5235E-10	44179	160513_QHF_FH_JSI12Kac_6	117.92	108.97			0.83644	0.73888	31.822	8	8	Median	0.86379	0.73888	1.138	2	2	Median	0.57441	0.68166	3.1608	2	2	Median	0.77839	0.73849	5.5722	2	2	Median	1.2223	1.2896	42.952	2	2	Median	4927200000	2508400000	2418700000	883410000	464790000	418620000	1825200000	1116700000	708490000	715760000	336170000	379590000	1502800000	590810000	912030000	57795	915	54448	351709;351710;351711;351712;351713;351714;351715;351716;351717;351718	474561;474562;474563;474564;474565;474566;474567;474568;474569;474570	474568			10	
WFTHASPTLFNAGTNRPQLSSCFLLSMK	1	Oxidation (M)	3226.5692	0.56920912	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	1	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	82.76	74.873	4	4.0676E-20	42183	160513_QHF_FH_JSI10Kac_6	112.8	80.31			0.96501	1.115	80.69	3	2	Plateau	0.81044	0.6974	NaN	1	1	Median	0.96501	1.115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.21891	0.23155	NaN	1	1	Median	306800000	145230000	161570000	62910000	24025000	38884000	190430000	85443000	104980000	0	0	0	53466000	35761000	17705000	57796	1242	54449	351719;351720;351721	474571;474572;474573	474573		877	3	
WFTHASPTLFNAGTNRPQLSSCFLLSMK	1	Unmodified	3210.5743	0.5742945	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			85.043	79.376	3;4	7.6848E-49	44390	160513_QHF_FH_JSI10Kac_6	167.67	155.18			0.69924	0.82991	3.3882	2	1	Median	NaN	NaN	NaN	0	0	Median	0.69924	0.82991	3.3882	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	544460000	377200000	167260000	0	0	0	544460000	377200000	167260000	0	0	0	0	0	0	57797	1242	54449	351722;351723	474574;474575	474574			2	
WFTLSSGQGQVLLR	0	Unmodified	1590.8518	0.85182621	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		81.925	79.194	2	4.342E-05	41263	160513_QHF_FH_JSI10Kac_6	101.48	84.046			1.1416	1.0327	17.845	3	0	Median	1.2283	0.98847	NaN	1	0	Median	1.0236	1.1908	20.144	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	194890000	97271000	97619000	24914000	12037000	12878000	169980000	85234000	84741000	0	0	0	0	0	0	57798	4399	54450	351724;351725;351726;351727	474576;474577;474578;474579	474579			4	
WFTNFLK	1	Unmodified	954.49634	0.49633839	3956	Q969Z3	MARC2	Mitochondrial amidoxime reducing component 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	3	1	72.882	72.129	2	0.011468	62684	160511_QHF_FH_JSI12i_3	75.311	54.157			1.1857	1.1051	68.84	7	5	Median	1.2434	0.99824	NaN	1	0	Median	1.1306	1.3274	96.015	2	2	Median	0.70725	0.66067	96.465	3	3	Plateau	1.1322	1.1191	NaN	1	0	Median	708920000	333670000	375250000	125450000	42387000	83065000	130820000	70202000	60613000	230420000	126810000	103610000	222230000	94268000	127970000	57799	3956	54451	351728;351729;351730;351731;351732;351733;351734	474580;474581;474582;474583;474584;474585;474586;474587;474588;474589	474589			10	
WFTSQVIR	0	Unmodified	1035.5502	0.55016488	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.75	6.4		1	4						3	2	3	2	1	53.121	49.157	2	0.00056048	43402	160511_QHF_FH_JSI11i_3	104.21	83.689			1.083	1.0798	19.444	8	4	Median	1.1028	0.91204	25.873	2	1	Median	1.0982	1.2992	8.3405	3	3	Plateau	1.1203	1.0552	1.2829	2	0	Median	0.80236	0.82005	NaN	1	0	Median	1099400000	518150000	581250000	235820000	102990000	132830000	444640000	192030000	252610000	164180000	84238000	79942000	254750000	138890000	115870000	57800	2517	54452	351735;351736;351737;351738;351739;351740;351741;351742	474590;474591;474592;474593;474594;474595;474596;474597;474598;474599	474590			10	
WFVLGVGQVIK	1	Unmodified	1244.7281	0.72812924	5710	Q9Y680	FKBP7	Peptidyl-prolyl cis-trans isomerase FKBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	89.227	83.707	2	4.8004E-05	43634	160513_QHF_FH_JSI11Kac_6	98.933	84.776			1.0199	0.93917	18.862	6	1	Median	1.0388	0.88767	NaN	1	0	Median	0.59967	0.69514	NaN	1	1	Median	1.1308	1.0726	10.807	2	0	Median	0.8494	0.88424	19.357	2	0	Median	622720000	288250000	334470000	149890000	63507000	86381000	116040000	65614000	50430000	235500000	97094000	138410000	121280000	62034000	59249000	57801	5710	54453	351743;351744;351745;351746;351747;351748	474600;474601;474602;474603;474604;474605;474606;474607;474608	474601			9	
WFVLKPNIISYYVSEDLK	2	Unmodified	2213.1772	0.17724267	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	94.359	85.985	3	1.1261E-05	50348	160513_QHF_FH_JSI10Kac_6	93.684	78.914			0.96957	1.1277	14.305	4	0	Linear	0.98692	0.85895	NaN	1	0	Median	0.88911	1.0571	NaN	1	0	Median	0.95252	0.90928	NaN	1	0	Median	1.095	1.1763	NaN	1	0	Median	310630000	180450000	130180000	64485000	45207000	19278000	89892000	45688000	44204000	65515000	31571000	33944000	90736000	57981000	32755000	57802	5289	54454	351749;351750;351751;351752	474609;474610;474611;474612;474613;474614	474614			6	
WFVLSNGLLSYYR	0	Unmodified	1616.8351	0.83511351	1201	P22059	OSBP	Oxysterol-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	92.658	84.119	2	1.1424E-19	48961	160513_QHF_FH_JSI10Kac_6	149.33	121.9			1.1754	1.0875	41.239	5	1	Median	1.1754	0.99586	NaN	1	0	Median	0.81955	0.97419	NaN	1	0	Median	1.9601	1.8833	46.842	2	1	Median	1.0424	1.0875	NaN	1	0	Median	4283700000	2106600000	2177100000	734130000	346480000	387640000	1750000000	1014500000	735450000	1036100000	424060000	612030000	763460000	321480000	441970000	57803	1201	54455	351753;351754;351755;351756;351757	474615;474616;474617;474618;474619;474620	474620			6	
WFVMGPPR	0	Unmodified	988.49529	0.49529253	3082	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	62.165	61.568	2	0.0078799	54493	160511_QHF_FH_JSI11i_3	58.167	47.753			0.87993	0.97381	6.1509	3	0	Median	NaN	NaN	NaN	0	0	Median	0.85863	0.9957	NaN	1	0	Median	1.0584	0.97381	NaN	1	0	Median	0.87993	0.88674	NaN	1	0	Median	195690000	99672000	96018000	0	0	0	61776000	34405000	27371000	51399000	25069000	26330000	82514000	40198000	42316000	57804	3082	54456	351758;351759;351760	474621;474622	474621			2	
WFWLLPVK	1	Unmodified	1087.6219	0.62187326	4733	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	95.167	86.773	2	0.012144	48803	160513_QHF_FH_JSI11Kac_6	63.148	42.448			0.94445	1.0527	17.461	4	0	Linear	1.0685	0.91228	NaN	1	0	Median	0.92641	1.0766	NaN	1	0	Median	0.96284	0.9051	NaN	1	0	Median	0.66276	0.70496	NaN	1	0	Median	571780000	278120000	293660000	148220000	73087000	75128000	193140000	102370000	90768000	147820000	65501000	82320000	82602000	37155000	45447000	57805	4733	54457	351761;351762;351763;351764	474623;474624;474625;474626;474627	474623			5	
WFYIDFGGLKPAGSEPTPK	2	Unmodified	2109.0571	0.057127534	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	90.976	90.91	3	8.6616E-05	78928	160511_QHF_FH_JSI12i_3	64.2	59.673			1.1273	1.1863	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1273	1.1863	NaN	1	0	Median	58130000	32882000	25247000	0	0	0	0	0	0	0	0	0	58130000	32882000	25247000	57806	562	54458	351765	474628	474628			1	
WFYIDFGGVK	1	Unmodified	1230.6073	0.6073454	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									3	1	1	1		86.898	79.015	2	0.022899	45129	160513_QHF_FH_JSI10Kac_6	46.447	35.087			1.1305	1.1205	16.758	3	0	Median	1.1305	0.9676	NaN	1	0	Median	0.93883	1.1205	NaN	1	0	Median	1.409	1.3517	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	400040000	203990000	196040000	119700000	61201000	58498000	156490000	79912000	76575000	123850000	62882000	60971000	0	0	0	57807	5345	54459	351766;351767;351768	474629;474630	474630			2	
WFYIDFGGVKPMGSEPVPK	2	Unmodified	2153.0656	0.06558373	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	88.691	83.179	3	1.7638E-06	43016	160513_QHF_FH_JSI11Kac_6	89.107	80.288			0.86149	0.8756	16.648	6	0	Median	1.068	0.92142	NaN	1	0	Median	0.74809	0.87851	NaN	1	0	Median	0.85644	0.80095	5.3683	2	0	Median	1.02	1.0438	25.316	2	0	Median	1030600000	537720000	492860000	236280000	126430000	109850000	241840000	142130000	99709000	268750000	142870000	125880000	283710000	126280000	157420000	57808	5345	54460	351769;351770;351771;351772;351773;351774	474631;474632;474633;474634;474635;474636;474637;474638;474639;474640;474641	474632			11	
WFYIDFGGVKPMGSEPVPK	2	Oxidation (M)	2169.0605	0.060498352	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	1	1	By matching			By MS/MS	11.7	6.13			1						2	1			2	84.163	78.089	3	0.00095201	39499	160513_QHF_FH_JSI12Kac_6	61.226	52.407			0.92183	0.87295	29.461	3	1	Plateau	0.88729	0.76286	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1613	1.1913	20.278	2	1	Median	120210000	56253000	63958000	39378000	21451000	17928000	0	0	0	0	0	0	80832000	34802000	46030000	57809	5345	54460	351775;351776;351777	474642;474643	474643		2634	2	
WFYIVVVPIDR	0	Unmodified	1405.7758	0.77580772	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	93.14	83.913	2	2.3896E-05	47289	160513_QHF_FH_JSI11Kac_6	102.07	92.635			1.1532	1.0662	8.1201	3	0	Plateau	1.091	0.94987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1532	1.0825	NaN	1	0	Median	0.88656	0.93275	NaN	1	0	Median	826060000	365340000	460720000	260090000	114700000	145390000	0	0	0	374570000	159190000	215380000	191400000	91449000	99950000	57810	971	54461	351778;351779;351780	474644;474645;474646;474647;474648;474649	474645			6	
WGAQHAGAR	0	Unmodified	952.46275	0.46274685	20	A5PLL7	TMEM189	Transmembrane protein 189	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				60.551	59.578	2	0.047573	52346	160511_QHF_FH_JSI9i_2	44.721	22.099			5.8553	5.1863	NaN	1	1	Median	5.8553	5.1863	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16123000	3528000	12595000	16123000	3528000	12595000	0	0	0	0	0	0	0	0	0	57811	20	54462	351781	474650	474650			1	
WGASTATTQK	1	Unmodified	1049.5142	0.5141733	5380	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	3	1	15.064	14.593	2	0.001677	12135	160511_QHF_FH_JSI10i_2	73.985	63.112			1.2693	1.1616	42.855	6	3	Median	1.7175	1.4617	NaN	1	0	Median	0.59027	0.73019	NaN	1	0	Median	1.7167	1.6711	38.675	3	3	Median	0.64919	0.72729	NaN	1	0	Median	422490000	209140000	213350000	81406000	40040000	41366000	47726000	31678000	16048000	223400000	93928000	129470000	69954000	43491000	26463000	57812	5380	54463	351782;351783;351784;351785;351786;351787;351788	474651;474652;474653;474654;474655;474656;474657;474658;474659;474660	474659			10	
WGDAGAEYVVESTGVFTTMEK	1	Oxidation (M)	2292.0256	0.025628988	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.74	10	14	4						4	10	7	8	7	87.403	86.066	2;3	1.1441E-16	77371	160511_QHF_FH_JSI10i_2	134.85	127.48			0.71082	0.80101	23.809	27	6	Median	1.2341	1.0128	43.166	5	2	Median	0.63367	0.77468	12.844	7	3	Median	0.91726	0.92828	22.163	8	1	Median	0.65864	0.70876	12.706	7	0	Median	2134200000	1182200000	952050000	341920000	138740000	203180000	635720000	393210000	242510000	617070000	331890000	285180000	539520000	318340000	221180000	57813	812	54464	351789;351790;351791;351792;351793;351794;351795;351796;351797;351798;351799;351800;351801;351802;351803;351804;351805;351806;351807;351808;351809;351810;351811;351812;351813;351814;351815;351816;351817;351818;351819;351820	474661;474662;474663;474664;474665;474666;474667;474668;474669;474670;474671;474672;474673;474674;474675;474676;474677;474678;474679;474680;474681;474682;474683;474684;474685;474686;474687;474688;474689;474690;474691;474692;474693;474694;474695;474696;474697;474698;474699;474700;474701;474702;474703;474704;474705;474706;474707;474708;474709;474710;474711;474712;474713;474714;474715;474716	474711		339	55	
WGDAGAEYVVESTGVFTTMEK	1	Unmodified	2276.0307	0.030714366	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.1	2.25	138	231	28	3	1				8	80	98	124	107	106.14	105.74	2;3	3.1932E-188	46527	160513_QHF_FH_JSI10Kac_6	295.09	280.3			0.94782	0.96388	27.884	330	100	Median	0.3363	1.1489	24.707	66	27	Plateau	0.70267	0.80871	18.137	80	25	Median	0.20345	1.0295	17.733	102	22	Linear	0.70335	0.74733	19.633	82	26	Median	29781000000	15607000000	14174000000	5754300000	2421400000	3332900000	7985900000	4746300000	3239600000	10424000000	5138600000	5285700000	5616400000	3300600000	2315800000	57814	812	54464	351821;351822;351823;351824;351825;351826;351827;351828;351829;351830;351831;351832;351833;351834;351835;351836;351837;351838;351839;351840;351841;351842;351843;351844;351845;351846;351847;351848;351849;351850;351851;351852;351853;351854;351855;351856;351857;351858;351859;351860;351861;351862;351863;351864;351865;351866;351867;351868;351869;351870;351871;351872;351873;351874;351875;351876;351877;351878;351879;351880;351881;351882;351883;351884;351885;351886;351887;351888;351889;351890;351891;351892;351893;351894;351895;351896;351897;351898;351899;351900;351901;351902;351903;351904;351905;351906;351907;351908;351909;351910;351911;351912;351913;351914;351915;351916;351917;351918;351919;351920;351921;351922;351923;351924;351925;351926;351927;351928;351929;351930;351931;351932;351933;351934;351935;351936;351937;351938;351939;351940;351941;351942;351943;351944;351945;351946;351947;351948;351949;351950;351951;351952;351953;351954;351955;351956;351957;351958;351959;351960;351961;351962;351963;351964;351965;351966;351967;351968;351969;351970;351971;351972;351973;351974;351975;351976;351977;351978;351979;351980;351981;351982;351983;351984;351985;351986;351987;351988;351989;351990;351991;351992;351993;351994;351995;351996;351997;351998;351999;352000;352001;352002;352003;352004;352005;352006;352007;352008;352009;352010;352011;352012;352013;352014;352015;352016;352017;352018;352019;352020;352021;352022;352023;352024;352025;352026;352027;352028;352029;352030;352031;352032;352033;352034;352035;352036;352037;352038;352039;352040;352041;352042;352043;352044;352045;352046;352047;352048;352049;352050;352051;352052;352053;352054;352055;352056;352057;352058;352059;352060;352061;352062;352063;352064;352065;352066;352067;352068;352069;352070;352071;352072;352073;352074;352075;352076;352077;352078;352079;352080;352081;352082;352083;352084;352085;352086;352087;352088;352089;352090;352091;352092;352093;352094;352095;352096;352097;352098;352099;352100;352101;352102;352103;352104;352105;352106;352107;352108;352109;352110;352111;352112;352113;352114;352115;352116;352117;352118;352119;352120;352121;352122;352123;352124;352125;352126;352127;352128;352129;352130;352131;352132;352133;352134;352135;352136;352137;352138;352139;352140;352141;352142;352143;352144;352145;352146;352147;352148;352149;352150;352151;352152;352153;352154;352155;352156;352157;352158;352159;352160;352161;352162;352163;352164;352165;352166;352167;352168;352169;352170;352171;352172;352173;352174;352175;352176;352177;352178;352179;352180;352181;352182;352183;352184;352185;352186;352187;352188;352189;352190;352191;352192;352193;352194;352195;352196;352197;352198;352199;352200;352201;352202;352203;352204;352205;352206;352207;352208;352209;352210;352211;352212;352213;352214;352215;352216;352217;352218;352219;352220;352221;352222;352223;352224;352225;352226;352227;352228;352229	474717;474718;474719;474720;474721;474722;474723;474724;474725;474726;474727;474728;474729;474730;474731;474732;474733;474734;474735;474736;474737;474738;474739;474740;474741;474742;474743;474744;474745;474746;474747;474748;474749;474750;474751;474752;474753;474754;474755;474756;474757;474758;474759;474760;474761;474762;474763;474764;474765;474766;474767;474768;474769;474770;474771;474772;474773;474774;474775;474776;474777;474778;474779;474780;474781;474782;474783;474784;474785;474786;474787;474788;474789;474790;474791;474792;474793;474794;474795;474796;474797;474798;474799;474800;474801;474802;474803;474804;474805;474806;474807;474808;474809;474810;474811;474812;474813;474814;474815;474816;474817;474818;474819;474820;474821;474822;474823;474824;474825;474826;474827;474828;474829;474830;474831;474832;474833;474834;474835;474836;474837;474838;474839;474840;474841;474842;474843;474844;474845;474846;474847;474848;474849;474850;474851;474852;474853;474854;474855;474856;474857;474858;474859;474860;474861;474862;474863;474864;474865;474866;474867;474868;474869;474870;474871;474872;474873;474874;474875;474876;474877;474878;474879;474880;474881;474882;474883;474884;474885;474886;474887;474888;474889;474890;474891;474892;474893;474894;474895;474896;474897;474898;474899;474900;474901;474902;474903;474904;474905;474906;474907;474908;474909;474910;474911;474912;474913;474914;474915;474916;474917;474918;474919;474920;474921;474922;474923;474924;474925;474926;474927;474928;474929;474930;474931;474932;474933;474934;474935;474936;474937;474938;474939;474940;474941;474942;474943;474944;474945;474946;474947;474948;474949;474950;474951;474952;474953;474954;474955;474956;474957;474958;474959;474960;474961;474962;474963;474964;474965;474966;474967;474968;474969;474970;474971;474972;474973;474974;474975;474976;474977;474978;474979;474980;474981;474982;474983;474984;474985;474986;474987;474988;474989;474990;474991;474992;474993;474994;474995;474996;474997;474998;474999;475000;475001;475002;475003;475004;475005;475006;475007;475008;475009;475010;475011;475012;475013;475014;475015;475016;475017;475018;475019;475020;475021;475022;475023;475024;475025;475026;475027;475028;475029;475030;475031;475032;475033;475034;475035;475036;475037;475038;475039;475040;475041;475042;475043;475044;475045;475046;475047;475048;475049;475050;475051;475052;475053;475054;475055;475056;475057;475058;475059;475060;475061;475062;475063;475064;475065;475066;475067;475068;475069;475070;475071;475072;475073;475074;475075;475076;475077;475078;475079;475080;475081;475082;475083;475084;475085;475086;475087;475088;475089;475090;475091;475092;475093;475094;475095;475096;475097;475098;475099;475100;475101;475102;475103;475104;475105;475106;475107;475108;475109;475110;475111;475112;475113;475114;475115;475116;475117;475118;475119;475120;475121;475122;475123;475124;475125;475126;475127;475128;475129;475130;475131;475132;475133;475134;475135;475136;475137;475138;475139;475140;475141;475142;475143;475144;475145;475146;475147;475148;475149;475150;475151;475152;475153;475154;475155;475156;475157;475158;475159;475160;475161;475162;475163;475164;475165;475166;475167;475168;475169;475170;475171;475172;475173;475174;475175;475176;475177;475178;475179;475180;475181;475182;475183;475184;475185;475186;475187;475188;475189;475190;475191;475192;475193;475194;475195;475196;475197;475198;475199;475200;475201;475202;475203;475204;475205;475206;475207;475208;475209;475210;475211;475212;475213;475214;475215;475216;475217;475218;475219;475220;475221;475222;475223;475224;475225;475226;475227;475228;475229;475230;475231;475232;475233;475234;475235;475236;475237;475238;475239;475240;475241;475242;475243;475244;475245;475246;475247;475248;475249;475250;475251;475252;475253;475254;475255;475256;475257;475258;475259;475260;475261;475262;475263;475264;475265;475266;475267;475268;475269;475270;475271;475272;475273;475274;475275;475276;475277;475278;475279;475280;475281;475282;475283;475284;475285;475286;475287;475288;475289;475290;475291;475292;475293;475294;475295;475296;475297;475298;475299;475300;475301;475302;475303;475304;475305;475306;475307;475308;475309;475310;475311;475312;475313;475314;475315;475316;475317;475318;475319;475320;475321;475322;475323;475324;475325;475326;475327;475328;475329;475330;475331;475332;475333;475334;475335;475336;475337;475338;475339;475340;475341;475342;475343;475344;475345;475346;475347;475348;475349;475350;475351;475352;475353;475354;475355;475356;475357;475358;475359;475360;475361;475362;475363;475364;475365;475366;475367;475368;475369;475370;475371;475372;475373;475374;475375;475376;475377	475377			651	
WGDAGAEYVVESTGVFTTMEKAGAHLQGGAK	2	Acetyl (K)	3208.5135	0.51352796	812	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	92.673	84.204	3;4	2.9135E-123	49234	160513_QHF_FH_JSI10Kac_6	234.37	226.07			0.68897	0.77626	32.462	8	0	Median	1.4146	1.1929	2.1368	2	0	Median	0.77026	0.9185	15.547	2	0	Median	0.6144	0.57932	16.703	2	0	Median	0.60612	0.64767	17.364	2	0	Median	1356200000	727660000	628560000	226270000	105020000	121250000	491250000	257620000	233630000	385830000	239490000	146340000	252870000	125530000	127340000	57815	812	54465	352230;352231;352232;352233;352234;352235;352236;352237;352238	475378;475379;475380;475381;475382;475383;475384;475385;475386;475387;475388;475389;475390	475389	445;458		13	
WGDEHIPGSPYR	0	Unmodified	1412.6473	0.64731274	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.36		9	4						3	2	3	6	5	46.773	44.465	2;3	7.773E-05	37436	160511_QHF_FH_JSI12i_3	54.772	52.532			1.0018	1.0253	21.489	16	1	Median	1.7258	1.5137	14.815	2	1	Median	0.89859	1.0574	11.363	3	0	Median	1.0471	1.0393	7.1884	6	0	Median	0.8081	0.8256	13.467	5	0	Median	2507300000	1271300000	1236000000	49758000	18111000	31646000	286760000	140190000	146570000	1083700000	507430000	576220000	1087100000	605520000	481610000	57816	1192	54466	352239;352240;352241;352242;352243;352244;352245;352246;352247;352248;352249;352250;352251;352252;352253;352254	475391;475392;475393;475394;475395;475396;475397;475398;475399;475400;475401;475402;475403;475404;475405;475406;475407;475408;475409;475410;475411;475412;475413;475414;475415;475416	475411			26	
WGDIEFPPPFGR	0	Unmodified	1416.6826	0.68263561	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							4	2	2	2	99.106	98.993	2	7.5486E-05	85233	160511_QHF_FH_JSI12i_2	94.309	94.309			0.94126	1.0104	22.931	7	0	Median	1.6983	1.4561	NaN	1	0	Median	0.90948	1.0606	6.852	2	0	Median	1.0381	1.0162	8.729	2	0	Median	0.73374	0.77897	17.28	2	0	Median	932930000	479300000	453640000	86786000	27687000	59099000	161510000	89014000	72499000	346270000	173580000	172690000	338370000	189020000	149340000	57817	1798	54467	352255;352256;352257;352258;352259;352260;352261;352262;352263;352264	475417;475418;475419;475420;475421;475422;475423;475424;475425;475426;475427;475428;475429;475430;475431;475432;475433;475434;475435;475436;475437;475438;475439;475440;475441	475424			25	
WGEEEAELNK	1	Unmodified	1203.5408	0.54078198	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	34.883	34.277	2	0.00076069	30223	160511_QHF_FH_JSI9i_1	83.948	53.693			0.85392	0.94304	28.9	4	3	Median	1.1128	0.94295	NaN	1	1	Median	0.81286	0.94314	NaN	1	1	Median	0.54769	0.532	NaN	1	1	Median	0.89705	0.95824	NaN	1	0	Median	358970000	185100000	173870000	64890000	26872000	38018000	98122000	57983000	40139000	88122000	52760000	35362000	107840000	47484000	60354000	57818	1665	54468	352265;352266;352267;352268	475442;475443;475444;475445;475446	475446			5	
WGEEHIPGSPFHVTVP	0	Unmodified	1787.8631	0.86311917	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	81.726	80.853	3	0.063898	70936	160511_QHF_FH_JSI11i_2	16.182	12.214			0.8022	0.84222	23.194	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98899	0.99232	NaN	1	0	Median	0.65069	0.71482	NaN	1	0	Median	194440000	102300000	92138000	0	0	0	0	0	0	131300000	70987000	60314000	63137000	31313000	31823000	57819	512	54469	352269;352270	475447	475447			1	
WGEPEPFLR	0	Unmodified	1129.5556	0.55564418	1307	P28340	POLD1	DNA polymerase delta catalytic subunit	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		62.118	61.596	2	0.055499	53609	160511_QHF_FH_JSI11i_2	53.753	44.89			1.321	1.3336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.321	1.3336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	59487000	22942000	36546000	0	0	0	0	0	0	59487000	22942000	36546000	0	0	0	57820	1307	54470	352271	475448	475448			1	
WGFIPLVIYLGFK	1	Unmodified	1551.8854	0.88535817	5189	Q9P0U1	TOMM7	Mitochondrial import receptor subunit TOM7 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	4	2	1	101.64	95.973	2;3	4.076E-17	55873	160513_QHF_FH_JSI10Kac_6	113.47	102.53			1.0215	1.1148	34.345	8	0	Median	1.245	1.0608	NaN	1	0	Median	1.0113	1.1843	15.745	4	0	Median	1.2978	1.211	35.11	2	0	Median	0.49313	0.5179	NaN	1	0	Median	7239100000	3361800000	3877300000	1566700000	597510000	969160000	4038100000	2005300000	2032800000	1139300000	426320000	712960000	495040000	332680000	162360000	57821	5189	54471	352272;352273;352274;352275;352276;352277;352278;352279;352280;352281	475449;475450;475451;475452;475453;475454;475455;475456;475457;475458;475459;475460;475461;475462;475463;475464;475465;475466	475463			18	
WGFIPLVIYLGFKR	1	Unmodified	1707.9865	0.98646919	5189	Q9P0U1	TOMM7	Mitochondrial import receptor subunit TOM7 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			97.838	90.425	3	1.8079E-07	53624	160513_QHF_FH_JSI10Kac_6	105.65	94.594			0.95201	0.95705	56.641	2	0	Median	1.6771	1.4285	NaN	1	0	Median	0.54041	0.6412	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	310650000	150020000	160630000	92374000	24469000	67906000	218270000	125550000	92720000	0	0	0	0	0	0	57822	5189	54472	352282;352283	475467;475468;475469	475468			3	
WGFTGQK	1	Unmodified	822.40244	0.40243801	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	3	0			3							1	1		1	31.099	30.156	2	0.01639	25070	160511_QHF_FH_JSI12i_3	63.148	45.586			0.82343	0.84867	21.461	3	0	Plateau	1.5368	1.2507	NaN	1	0	Median	0.75076	0.87845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82343	0.84867	NaN	1	0	Median	489960000	282210000	207750000	81034000	29750000	51284000	97338000	54252000	43086000	0	0	0	311590000	198210000	113380000	57823	5135	54473	352284;352285;352286	475470;475471	475470			2	
WGGDGLLYSASQDR	0	Unmodified	1523.7005	0.70047052	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	60.35	59.694	2	0.00042539	53028	160511_QHF_FH_JSI11i_3	73.848	66.995			1.271	1.2194	19.959	6	5	Median	1.6621	1.3858	NaN	1	1	Median	0.82197	1.0266	NaN	1	1	Median	1.2821	1.2897	10.966	2	1	Median	0.98691	1.0162	28.823	2	2	Median	200750000	91129000	109620000	25276000	8074400	17201000	40474000	25883000	14591000	80771000	31085000	49686000	54231000	26086000	28145000	57824	5054	54474	352287;352288;352289;352290;352291;352292	475472;475473;475474;475475;475476;475477;475478	475472			7	
WGGIMVYNVDSK	1	Unmodified	1367.6544	0.65437195	4234	Q96S52	PIGS	GPI transamidase component PIG-S	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.62		3	3						4	1	3	3	3	71.061	67.141	2	3.8351E-13	35318	160513_QHF_FH_JSI9Kac_6	132.32	115.7			1.134	1.1445	15.028	10	0	Median	1.3514	1.1546	NaN	1	0	Median	0.91284	1.3112	28.964	3	0	Plateau	1.1442	1.183	3.1431	3	0	Plateau	0.96022	1.0414	5.1036	3	0	Median	648460000	291130000	357330000	71368000	19685000	51682000	193900000	92629000	101280000	203460000	94595000	108870000	179730000	84224000	95503000	57825	4234	54475	352293;352294;352295;352296;352297;352298;352299;352300;352301;352302	475479;475480;475481;475482;475483;475484;475485;475486;475487;475488;475489	475484			10	
WGGVEMHNK	1	Unmodified	1056.4811	0.48109903	1785	P52789	HK2	Hexokinase-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.923	19.937	3	0.021769	16225	160511_QHF_FH_JSI12i_3	35.511	28.616			1.3016	1.3447	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3016	1.3447	NaN	1	1	Median	143890000	66834000	77053000	0	0	0	0	0	0	0	0	0	143890000	66834000	77053000	57826	1785	54476	352303	475490	475490			1	
WGIQQNSGFGK	1	Unmodified	1220.5938	0.5938206	4208	Q96QD9	FYTTD1	UAP56-interacting factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	46.154	45.301	2	0.00027385	38488	160511_QHF_FH_JSI12i_3	77.677	66.526			0.85302	0.7142	20.449	4	0	Linear	1.3827	1.1577	NaN	1	0	Median	0.83326	0.95203	NaN	1	0	Median	0.87325	0.82271	NaN	1	0	Median	0.71037	0.7183	NaN	1	0	Median	219820000	130310000	89509000	33744000	14249000	19495000	35506000	21454000	14052000	65832000	38615000	27217000	84733000	55989000	28744000	57827	4208	54477	352304;352305;352306;352307	475491;475492;475493;475494;475495	475494			5	
WGIQSAMNTSIVR	0	Unmodified	1461.7398	0.73983291	5032	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	70.385	69.303	2	0.00054065	56926	160511_QHF_FH_JSI9i_3	69.721	58.569			0.94022	1.0576	22.751	3	0	Median	1.3306	1.0817	NaN	1	0	Median	0.94022	1.0576	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69493	0.72156	NaN	1	0	Median	87259000	43727000	43532000	26822000	10801000	16021000	22932000	10468000	12465000	0	0	0	37505000	22459000	15046000	57828	5032	54478	352308;352309;352310	475496	475496			1	
WGLAWVSSQFYNK	1	Unmodified	1584.7725	0.77251325	2537	Q14457	BECN1	Beclin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		86.419	80.718	2	1.5557E-30	43859	160513_QHF_FH_JSI11Kac_6	166.34	149.72			0.64592	0.77609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64592	0.77609	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	123990000	64992000	58995000	0	0	0	123990000	64992000	58995000	0	0	0	0	0	0	57829	2537	54479	352311;352312	475497;475498	475497			2	
WGLGGTCVNVGCIPK	1	Unmodified	1616.7803	0.78031752	2778;4879	Q9NNW7;Q16881	TXNRD2;TXNRD1	Thioredoxin reductase 2, mitochondrial;Thioredoxin reductase 1, cytoplasmic	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	3	2	73.855	73.227	2	0.00057406	64236	160511_QHF_FH_JSI11i_2	69.864	56.201			1.0651	1.0166	30.747	7	4	Median	NaN	NaN	NaN	0	0	Median	1.196	1.4011	5.5736	2	1	Median	0.85496	0.81054	22.454	3	2	Median	1.0352	1.0821	31.405	2	1	Median	984410000	516310000	468090000	0	0	0	117490000	51097000	66394000	579590000	323100000	256490000	287330000	142120000	145210000	57830	4879;2778	54480	352313;352314;352315;352316;352317;352318;352319	475499;475500;475501;475502;475503;475504;475505;475506;475507;475508	475505			10	
WGLVPSWFK	1	Unmodified	1118.5913	0.59130141	4079	Q96FZ2	HMCES	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	98.283	98.293	2	0.011448	85310	160511_QHF_FH_JSI12i_3	48.794	32.591			0.76848	0.78224	6.2114	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86073	0.81736	NaN	1	0	Median	0.68612	0.74862	NaN	1	0	Median	108030000	68026000	40002000	0	0	0	0	0	0	37093000	20002000	17091000	70935000	48024000	22911000	57831	4079	54481	352320;352321	475509;475510;475511	475511			3	
WGMLFLVNQLFK	1	Oxidation (M)	1510.8006	0.80064226	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			95.309	89.589	2	0.002053	51637	160513_QHF_FH_JSI10Kac_6	78.06	66.131			1.1084	1.3236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1084	1.3236	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122340000	64317000	58027000	0	0	0	122340000	64317000	58027000	0	0	0	0	0	0	57832	2909	54482	352322	475512	475512		2165	1	
WGPNHAADPIITR	0	Unmodified	1446.7368	0.73679645	4494	Q9BW91	NUDT9	ADP-ribose pyrophosphatase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			44.389	42.816	3	0.0051229	35611	160511_QHF_FH_JSI10i_3	41.967	36.36			1.0529	1.0155	20.381	4	2	Median	1.3729	1.1025	21.61	2	1	Median	0.79523	0.93129	22.234	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	439460000	205920000	233540000	272070000	115030000	157040000	167390000	90892000	76495000	0	0	0	0	0	0	57833	4494	54483	352323;352324;352325;352326	475513;475514;475515;475516;475517;475518	475513			6	
WGQIVLK	1	Unmodified	842.50142	0.50142377	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.18	6.69	1	4	2						4	2	2	4	3	54.794	51.005	2	0.02555	43897	160511_QHF_FH_JSI12i_2	54.525	19.42			1.0507	1.0485	26.668	11	1	Median	1.5257	1.3212	10.228	2	0	Median	0.82955	1.003	6.2624	2	0	Median	1.0887	1.0605	20.012	4	0	Median	0.80416	0.88296	49.566	3	1	Median	1742200000	780040000	962150000	198020000	73652000	124370000	276240000	126500000	149740000	693910000	302170000	391740000	574010000	277720000	296290000	57834	4715	54484	352327;352328;352329;352330;352331;352332;352333;352334;352335;352336;352337	475519;475520;475521;475522;475523;475524;475525;475526;475527;475528;475529	475520			11	
WGQIVLKNDHQEDFWK	2	Acetyl (K)	2084.0116	0.011574324	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		80.403	71.089	3	0.044581	39016	160513_QHF_FH_JSI11Kac_6	35.64	26.356			0.23337	0.22193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23337	0.22193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	49178000	45329000	3849200	0	0	0	0	0	0	49178000	45329000	3849200	0	0	0	57835	4715	54485	352338	475530	475530			1	
WGQPPSPTPVPRPPDADPNTPSPK	1	Unmodified	2534.2554	0.25538642	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		55.13	55.13	3	5.0125E-06	48892	160511_QHF_FH_JSI11i_3	62.19	54.478			1.4508	1.3667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4508	1.3667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57877000	21678000	36200000	0	0	0	0	0	0	57877000	21678000	36200000	0	0	0	57836	2578	54486	352339	475531;475532;475533	475533			3	
WGSVTHQSVGVVK	1	Unmodified	1382.7306	0.73064844	719	O95714	HERC2	E3 ubiquitin-protein ligase HERC2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	34.227	33.462	3	0.00046258	28174	160511_QHF_FH_JSI12i_3	69.602	61.089			0.89457	0.94888	76.844	2	2	Median	NaN	NaN	NaN	0	0	Median	1.4579	1.6338	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54892	0.5511	NaN	1	1	Median	79179000	45067000	34113000	0	0	0	22493000	11391000	11102000	0	0	0	56686000	33675000	23010000	57837	719	54487	352340;352341	475534;475535	475535			2	
WGTDEAQFIYILGNR	0	Unmodified	1781.8737	0.87368386	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.54		9	4						7	4	3	7	6	95.96	92.862	2;3	1.124E-33	47027	160513_QHF_FH_JSI10Kac_6	219.92	203.54			1.0488	1.0713	21.795	20	0	Median	1.5258	1.2988	20.864	4	0	Median	0.9006	1.0781	6.8728	3	0	Plateau	1.1608	1.0876	7.348	7	0	Median	0.78856	0.84003	16.861	6	0	Median	1758400000	882050000	876350000	393230000	160610000	232620000	516550000	284300000	232250000	514440000	234920000	279510000	334180000	202210000	131970000	57838	891	54488	352342;352343;352344;352345;352346;352347;352348;352349;352350;352351;352352;352353;352354;352355;352356;352357;352358;352359;352360;352361	475536;475537;475538;475539;475540;475541;475542;475543;475544;475545;475546;475547;475548;475549;475550;475551;475552;475553;475554;475555;475556;475557;475558;475559;475560;475561;475562;475563;475564;475565;475566;475567;475568	475567			33	
WGTDEEK	1	Unmodified	863.36611	0.36611208	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	1	2	12.099	11.697	2	0.0055575	9279	160511_QHF_FH_JSI10i_1	94.407	60.669			0.91196	0.97324	15.837	5	0	Median	1.5274	1.2382	NaN	1	0	Median	0.91196	1.0673	NaN	1	0	Median	0.99273	0.97324	NaN	1	0	Median	0.81792	0.85367	2.1882	2	0	Median	5368400000	2881200000	2487200000	889000000	329330000	559670000	1537200000	739430000	797780000	1381900000	781470000	600390000	1560400000	1031000000	529380000	57839	916	54489	352362;352363;352364;352365;352366;352367	475569;475570;475571;475572;475573;475574;475575;475576	475573			8	
WGTFSNLWEHNQAIIK	1	Unmodified	1942.969	0.96898123	1550	P42892	ECE1	Endothelin-converting enzyme 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		82.056	82.056	3	9.6714E-05	73315	160511_QHF_FH_JSI11i_3	79.022	67.76			0.72123	0.67697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72123	0.67697	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	58410000	31302000	27108000	0	0	0	0	0	0	58410000	31302000	27108000	0	0	0	57840	1550	54490	352368	475577	475577			1	
WGTLTDCVVMRDPQTK	1	Unmodified	1905.9077	0.90770288	1763	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							1	2	1		59.752	58.769	3	0.00010572	52079	160511_QHF_FH_JSI11i_3	73.887	64.603			0.83738	0.88931	25.245	4	1	Median	1.4396	1.1609	NaN	1	0	Median	0.71395	0.86574	29.372	2	1	Median	0.77179	0.74221	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	807480000	469920000	337560000	47988000	20945000	27042000	310000000	192120000	117880000	449490000	256860000	192630000	0	0	0	57841	1763	54491	352369;352370;352371;352372	475578;475579;475580;475581;475582	475578			5	
WGTPVPLEGFEDK	1	Unmodified	1473.714	0.71399532	1872	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.38	0.484	5	3								1	3	2	2	79.789	79.161	2	5.755E-07	71797	160511_QHF_FH_JSI10i_1	93.345	74.102			0.99493	0.98818	14.402	7	3	Median	1.4284	1.1488	NaN	1	1	Median	0.92152	1.1022	15.484	2	1	Median	1.0042	0.9878	0.054997	2	1	Median	0.87219	0.94284	24.553	2	0	Median	615310000	317280000	298030000	19715000	6907100	12808000	196610000	97069000	99542000	232170000	121840000	110320000	166820000	91456000	75360000	57842	1872	54492	352373;352374;352375;352376;352377;352378;352379;352380	475583;475584;475585;475586;475587;475588;475589;475590	475588			8	
WGTSGLVGR	0	Unmodified	931.48756	0.48756462	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			38.469	37.503	2	0.059841	33013	160511_QHF_FH_JSI10i_2	42.287	26.906			0.59347	0.72175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59347	0.72175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36244000	20571000	15673000	0	0	0	36244000	20571000	15673000	0	0	0	0	0	0	57843	5161	54493	352381	475591	475591			1	
WHFYDTVK	1	Unmodified	1094.5185	0.5185304	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.61	5.57		5	9						4	4	5	5	4	51.085	48.183	2;3	0.00094656	41712	160511_QHF_FH_JSI11i_3	62.546	54.659			0.92627	0.8955	11.168	16	4	Median	1.0912	0.94177	10.441	2	0	Median	0.72921	0.83343	5.7166	5	3	Median	0.96199	0.90423	11.871	5	0	Median	0.96337	0.99833	12.651	4	1	Median	3378800000	1507800000	1871000000	78838000	34482000	44356000	297940000	178460000	119470000	1417800000	570320000	847470000	1584200000	724570000	859650000	57844	1367	54494	352382;352383;352384;352385;352386;352387;352388;352389;352390;352391;352392;352393;352394;352395;352396;352397;352398;352399	475592;475593;475594;475595;475596;475597;475598;475599;475600;475601;475602;475603;475604;475605;475606;475607;475608;475609;475610;475611;475612;475613;475614;475615	475592			24	
WHIPIPSGK	1	Unmodified	1033.5709	0.57090032	3598	Q8NBN3	TMEM87A	Transmembrane protein 87A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	54.246	53.408	3	0.00080499	44971	160511_QHF_FH_JSI10i_3	60.436	50.848			1.0864	1.0335	4.9931	4	0	Median	1.2942	1.0292	NaN	1	0	Median	0.89591	1.0378	NaN	1	0	Median	1.194	1.1126	NaN	1	0	Median	0.98846	0.9863	NaN	1	0	Median	437490000	217740000	219750000	51742000	20656000	31086000	58333000	30980000	27353000	101230000	49694000	51540000	226180000	116410000	109770000	57845	3598	54495	352400;352401;352402;352403;352404	475616;475617;475618;475619;475620;475621;475622;475623;475624;475625;475626;475627;475628;475629;475630	475621			15	
WHLEQQQAIQTTEAEK	1	Unmodified	1938.9436	0.94355434	5289	Q9UH65	SWAP70	Switch-associated protein 70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							1	1	3	2	43.107	42.752	2;3	1.9634E-07	37589	160511_QHF_FH_JSI11i_3	131.69	122.16			0.8757	0.87392	32.747	7	5	Median	0.65592	0.55444	NaN	1	1	Median	0.56832	0.70774	NaN	1	1	Median	0.93971	0.87392	34.169	3	2	Median	1.0123	1.0638	22.868	2	1	Median	626550000	347660000	278890000	54018000	30415000	23603000	103120000	66129000	36995000	255380000	138930000	116450000	214030000	112180000	101850000	57846	5289	54496	352405;352406;352407;352408;352409;352410;352411	475631;475632;475633;475634;475635;475636;475637;475638;475639;475640	475633			10	
WHLLSELEAAPYLPQEEK	1	Unmodified	2152.0841	0.084070566	3756	Q8WUA4	GTF3C2	General transcription factor 3C polypeptide 2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	95.097	95.104	3	0.0066514	82444	160511_QHF_FH_JSI12i_3	44.391	35.599			0.39685	0.41707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.39685	0.41707	NaN	1	1	Median	13729000	9751800	3977000	0	0	0	0	0	0	0	0	0	13729000	9751800	3977000	57847	3756	54497	352412	475641;475642	475641			2	
WHTLAYVSDLGK	1	Unmodified	1388.7089	0.70885036	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	59.652	59.384	2	0.0019757	51122	160511_QHF_FH_JSI12i_3	60.434	42.569			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57848	5332	54498	352413	475643	475643			1	
WHYFLVFEK	1	Unmodified	1267.639	0.63897988	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.315	72.057	3	6.94E-05	39316	160513_QHF_FH_JSI11Kac_6	85.676	48.694			0.80732	1.0314	26.884	4	0	Linear	0.79672	0.6864	NaN	1	0	Median	0.81805	0.97313	NaN	1	0	Median	0.8652	0.81486	NaN	1	0	Median	0.48982	0.51753	NaN	1	0	Median	572260000	327610000	244650000	108930000	78844000	30085000	208040000	98612000	109430000	150920000	78426000	72495000	104370000	71730000	32644000	57849	220	54499	352414;352415;352416;352417	475644;475645;475646;475647;475648;475649	475644			6	
WIDATSGIYNSEK	1	Unmodified	1482.6991	0.69907354	3799	Q8WWI1	LMO7	LIM domain only protein 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	51.89	51.247	2	8.0691E-05	46156	160511_QHF_FH_JSI10i_1	98.898	88.527			0.64889	0.63739	90.645	5	3	Median	5.9699	4.955	NaN	1	0	Median	0.51387	0.61329	NaN	1	0	Median	0.72215	0.71193	15.64	2	2	Median	0.60654	0.61813	NaN	1	1	Median	611120000	360590000	250530000	57489000	7095500	50393000	186890000	139480000	47404000	238080000	133250000	104840000	128660000	80762000	47897000	57850	3799	54500	352418;352419;352420;352421;352422	475650;475651;475652;475653;475654;475655	475652			6	
WIDETPPVDQPSR	0	Unmodified	1538.7365	0.73652168	2645	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	46.351	45.698	2	0.00079618	41525	160511_QHF_FH_JSI12i_1	66.262	50.997			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57851	2645	54501	352423	475656	475656			1	
WIDLTMEDIRR	0	Unmodified	1446.7289	0.72893388	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	1		By MS/MS	By matching	By matching	2.33	0.471		2	1								1	1	1	67.2	66.637	3	0.057661	59345	160511_QHF_FH_JSI10i_2	16.472	9.4331			1.0657	1.1723	4.5099	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.91502	1.1126	NaN	1	0	Median	1.0657	1.0716	NaN	1	0	Median	1.1578	1.1723	NaN	1	0	Median	169340000	85166000	84179000	0	0	0	36467000	14764000	21703000	25052000	15001000	10051000	107830000	55401000	52426000	57852	1636	54502	352424;352425;352426	475657	475657			1	
WIDNPTVDDR	0	Unmodified	1229.5677	0.56766543	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.14	4.45	4	2					1			1	1	1	4	37.693	35.384	2	4.8906E-05	32249	160511_QHF_FH_JSI12i_1	93.178	80.551			1.0196	1.0862	13.522	6	1	Median	1.7078	1.3825	NaN	1	0	Median	0.91292	1.0656	NaN	1	0	Median	1.0701	1.035	NaN	1	0	Median	1.2174	1.3152	14.167	3	1	Plateau	1490700000	707630000	783050000	180880000	62591000	118290000	383620000	193330000	190290000	519290000	249030000	270260000	406890000	202690000	204210000	57853	1139	54503	352427;352428;352429;352430;352431;352432;352433	475658;475659;475660;475661;475662;475663;475664;475665;475666	475662			9	
WIDNPTVDDRGVGQAAIR	0	Unmodified	1981.997	0.99698689	1139	P18206	VCL	Vinculin	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	52.367	51.978	3	0.0015381	45868	160511_QHF_FH_JSI10i_2	72.184	67.484			1.415	1.4457	11.347	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3507	1.6477	NaN	1	0	Median	1.9517	1.8123	NaN	1	0	Median	1.415	1.4457	NaN	1	0	Median	170960000	63604000	107350000	0	0	0	51344000	24027000	27317000	50990000	18141000	32849000	68623000	21437000	47186000	57854	1139	54504	352434;352435;352436	475667;475668;475669;475670	475668			3	
WIEQVTGR	0	Unmodified	987.51378	0.51377937	5463	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		30.082	29.299	2	0.012705	24716	160511_QHF_FH_JSI11i_2	61.999	35.397			0.3226	0.38457	18.863	3	2	Plateau	0.44861	0.38457	NaN	1	0	Median	0.37865	0.4604	NaN	1	1	Median	0.3226	0.31575	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98675000	66199000	32476000	20317000	14330000	5986600	36403000	23731000	12672000	41955000	28138000	13817000	0	0	0	57855	5463	54505	352437;352438;352439	475671;475672;475673	475672			3	
WIEQWIK	1	Unmodified	1001.5335	0.53345218	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	0	0	0	0	By MS/MS		By matching		2	0		2								1		1		63.638	62.905	2	0.032886	55568	160511_QHF_FH_JSI9i_2	55.604	44.73			0.93135	0.85175	6.2992	2	0	Median	0.96599	0.81464	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89796	0.89054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	72804000	34839000	37965000	22276000	10343000	11933000	0	0	0	50527000	24495000	26032000	0	0	0	57856	5590	54506	352440;352441	475674	475674			1	
WIESKHK	2	Acetyl (K)	968.50797	0.50796571	1297	P27797	CALR	Calreticulin	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									3		1	2		19.486	11.103	2;3	0.010412	7656	160513_QHF_FH_JSI11Kac_6	57.177	33.222			0.22439	0.21769	89.373	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.90361	1.0718	NaN	1	0	Median	0.23729	0.22847	6.8341	2	0	Median	NaN	NaN	NaN	0	0	Median	100770000	81036000	19739000	0	0	0	3653000	2159200	1493800	97122000	78877000	18245000	0	0	0	57857	1297	54507	352442;352443;352444	475675;475676;475677	475675	1230		3	
WIGLDLSNGK	1	Unmodified	1101.5819	0.58185893	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	65.332	64.409	2	0.00038059	55313	160511_QHF_FH_JSI12i_2	76.345	67.482			0.52572	0.55012	36.887	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42733	0.42382	NaN	1	0	Median	0.64676	0.71407	NaN	1	0	Median	331700000	234600000	97100000	0	0	0	0	0	0	204760000	155310000	49447000	126940000	79289000	47653000	57858	1132	54508	352445;352446	475678;475679;475680	475678			3	
WIGLDLSNGKPR	1	Unmodified	1354.7357	0.73573382	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.92	5.53		1	9						3	5	4	2	2	58.545	55.552	2;3	1.013E-06	45793	160511_QHF_FH_JSI9i_3	106.49	97.298			0.8878	0.87164	27.157	12	1	Median	1.0225	0.84194	34.575	4	1	Median	0.68216	0.78384	18.972	4	0	Median	0.96491	0.91124	0.18031	2	0	Median	1.025	1.0936	34.229	2	0	Median	3080700000	1542700000	1538000000	920110000	360900000	559200000	721790000	354730000	367060000	1374700000	789050000	585630000	64083000	37998000	26085000	57859	1132	54509	352447;352448;352449;352450;352451;352452;352453;352454;352455;352456;352457;352458;352459	475681;475682;475683;475684;475685;475686;475687;475688;475689;475690;475691;475692;475693;475694;475695;475696;475697;475698;475699;475700;475701;475702;475703;475704;475705	475696			25	
WIIALYTSK	1	Unmodified	1093.6172	0.61718181	4168	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	80.963	72.706	2	0.0031078	40728	160513_QHF_FH_JSI10Kac_6	75.043	68.148			1.1842	1.2351	44.286	4	0	Median	0.64738	0.55153	NaN	1	0	Median	1.1943	1.4309	NaN	1	0	Median	1.1741	1.1038	NaN	1	0	Median	1.2935	1.3822	NaN	1	0	Median	354930000	182520000	172410000	92113000	64733000	27380000	140890000	59023000	81868000	78126000	36857000	41269000	43803000	21909000	21894000	57860	4168	54510	352460;352461;352462;352463	475706;475707;475708;475709;475710;475711;475712;475713	475712			8	
WIKDNISPK	2	Acetyl (K)	1141.6132	0.61315906	2084	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	14	0							2					1	1	54.266	43.559	2	0.042594	25325	160513_QHF_FH_JSI11Kac_4	45.368	31.776			0.61791	0.63338	32.688	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5112	0.50267	NaN	1	0	Median	0.7469	0.79809	NaN	1	0	Median	9080800	5496300	3584500	0	0	0	0	0	0	6335800	4019500	2316300	2745000	1476900	1268200	57861	2084	54511	352464;352465	475714;475715	475714			2	
WILSQTHNIFTQAGVR	0	Unmodified	1869.985	0.98496564	3642	Q8NEW0	SLC30A7	Zinc transporter 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	77.694	69.848	3	2.9862E-16	37265	160513_QHF_FH_JSI9Kac_6	116.43	90.84			0.81277	0.9184	0.11639	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76656	0.91764	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.86177	0.91916	NaN	1	0	Median	480440000	289070000	191370000	0	0	0	436190000	264790000	171390000	0	0	0	44253000	24277000	19977000	57862	3642	54512	352466;352467;352468	475716;475717;475718	475716			3	
WINATDPSAR	0	Unmodified	1129.5516	0.55162144	900	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2	0		3									1	1	1	28.541	27.675	2	0.0024321	23330	160511_QHF_FH_JSI11i_2	59.908	48.314			1.0081	1.0089	44.412	3	0	Median	NaN	NaN	NaN	0	0	Median	1.5774	1.948	NaN	1	0	Median	1.0081	1.0089	NaN	1	0	Median	0.74779	0.83615	NaN	1	0	Median	231730000	107500000	124230000	0	0	0	100830000	40466000	60366000	60054000	26368000	33687000	70843000	40663000	30181000	57863	900	54513	352469;352470;352471	475719;475720;475721	475721			3	
WINEAQEAASSDNIMVQYHALGVLYHLR	0	Unmodified	3227.5822	0.58221665	5234	Q9UBF2	COPG2	Coatomer subunit gamma-2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				87.163	78.544	4	0.013026	43492	160513_QHF_FH_JSI9Kac_6	42.659	31.348			1.2256	1.0443	NaN	1	1	Median	1.2256	1.0443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56276000	25528000	30748000	56276000	25528000	30748000	0	0	0	0	0	0	0	0	0	57864	5234	54514	352472	475722	475722			1	
WINTVAQALHLLSTLYGPFPNCYGIGR	0	Unmodified	3060.5644	0.56438174	4666	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.187	93.467	4	2.724E-08	54817	160513_QHF_FH_JSI10Kac_6	94.08	85.112			1.2124	1.4445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2124	1.4445	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	138260000	49806000	88451000	0	0	0	138260000	49806000	88451000	0	0	0	0	0	0	57865	4666	54515	352473	475723;475724	475723			2	
WIPEAQILGGGQVATLSK	1	Unmodified	1867.0203	0.020348097	4590	Q9C0I1	MTMR12	Myotubularin-related protein 12	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	88.433	88.323	2	0.0022384	76686	160511_QHF_FH_JSI12i_3	61.375	37.626			1.5334	1.6404	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5334	1.6404	NaN	1	1	Median	12214000	3335100	8878900	0	0	0	0	0	0	0	0	0	12214000	3335100	8878900	57866	4590	54516	352474	475725	475725			1	
WIPGAADDSK	1	Unmodified	1058.5033	0.50327426	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	37.104	35.752	2	0.03654	30415	160511_QHF_FH_JSI12i_2	46.001	25.302			1.5876	1.73	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5876	1.73	NaN	1	1	Median	37486000	13075000	24411000	0	0	0	0	0	0	0	0	0	37486000	13075000	24411000	57867	3819	54517	352475	475726	475726			1	
WIPLVNGGTTQGPR	0	Unmodified	1494.7943	0.79431133	3441	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.901	65.411	2	0.0021894	53734	160511_QHF_FH_JSI9i_3	57.836	51.596			0.74531	0.72431	26.302	2	1	Median	1.0769	0.87236	NaN	1	0	Median	0.5158	0.60139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35734000	18655000	17079000	25637000	11559000	14077000	10097000	7096100	3001400	0	0	0	0	0	0	57868	3441	54518	352476;352477	475727;475728;475729;475730	475729			4	
WIQTVLAR	0	Unmodified	985.5709	0.57090032	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	47.608	47.368	2	0.054734	40596	160511_QHF_FH_JSI12i_3	45.081	22.95			1.5242	1.5729	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5242	1.5729	NaN	1	1	Median	25437000	10798000	14639000	0	0	0	0	0	0	0	0	0	25437000	10798000	14639000	57869	3429	54519	352478	475731	475731			1	
WISDWNLTTEK	1	Unmodified	1391.6721	0.67213051	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		4	6						2	3	2	2	5	69.014	68.271	2	7.0098E-08	60530	160511_QHF_FH_JSI10i_2	150.27	115.88			0.89364	0.95597	17.139	9	3	Median	1.1295	0.94728	4.4777	2	0	Median	0.76469	0.88123	17.672	2	0	Median	1.0415	1.0074	16.221	2	1	Median	0.83446	0.95597	27.709	3	2	Median	1397500000	656660000	740850000	221960000	104520000	117440000	264130000	142070000	122070000	458450000	210360000	248090000	452980000	199720000	253260000	57870	3222	54520	352479;352480;352481;352482;352483;352484;352485;352486;352487;352488;352489;352490	475732;475733;475734;475735;475736;475737;475738;475739;475740;475741;475742;475743;475744;475745;475746;475747;475748;475749;475750;475751;475752;475753;475754;475755;475756;475757	475751			26	
WISIMTER	0	Oxidation (M)	1050.5168	0.51681584	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.31	6.33		3	3				1	4	2	2	4	4	3	45.984	40.147	2	0.0057852	34223	160511_QHF_FH_JSI12i_3	70.525	54.322			1.05	1.0498	17.178	13	0	Median	1.0357	0.88811	12.015	2	0	Median	0.8879	1.0268	9.5305	4	0	Median	1.1586	1.1429	20.068	4	0	Median	0.95012	0.97427	18.175	3	0	Plateau	1934100000	967780000	966340000	149130000	67979000	81150000	626300000	351570000	274730000	690990000	301840000	389150000	467700000	246390000	221310000	57871	870	54521	352491;352492;352493;352494;352495;352496;352497;352498;352499;352500;352501;352502;352503	475758;475759;475760;475761;475762;475763;475764;475765;475766;475767;475768	475766		413	11	
WISIMTER	0	Unmodified	1034.5219	0.52190122	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		8	4						4	4	4	4	4	60.312	57.336	2	0.0016051	56916	160511_QHF_FH_JSI11i_2	87.251	75.84			0.94381	0.93634	16.68	16	1	Median	1.213	1.0367	15.627	4	1	Median	0.86076	0.96566	18.62	4	0	Median	0.90984	0.89443	14.579	4	0	Median	0.6854	0.71299	22.856	4	0	Linear	25829000000	12188000000	13641000000	6815100000	2770600000	4044500000	7997200000	4216100000	3781100000	7009000000	3201400000	3807600000	4008000000	2000400000	2007700000	57872	870	54521	352504;352505;352506;352507;352508;352509;352510;352511;352512;352513;352514;352515;352516;352517;352518;352519	475769;475770;475771;475772;475773;475774;475775;475776;475777;475778;475779;475780;475781;475782;475783;475784;475785;475786;475787;475788;475789;475790;475791;475792;475793;475794;475795;475796;475797;475798;475799	475785			31	
WISLNTVALVTDNAVYHWSMEGESQPVK	1	Unmodified	3173.5492	0.54918518	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	96.044	87.637	3;4	1.3577E-99	49310	160513_QHF_FH_JSI11Kac_6	223.64	203.38			1.2381	1.1195	51.74	8	0	Median	1.641	1.4156	47.792	2	0	Median	0.74812	0.88863	8.9025	2	0	Median	2.065	1.9471	63.659	2	0	Median	1.4808	1.5604	76.009	2	0	Median	4226400000	1543100000	2683300000	817110000	284550000	532560000	938880000	567210000	371670000	1246400000	296200000	950230000	1224000000	395180000	828790000	57873	2155	54522	352520;352521;352522;352523;352524;352525;352526;352527	475800;475801;475802;475803;475804;475805;475806;475807;475808;475809;475810;475811;475812;475813;475814;475815	475803			16	
WISLNTVALVTDNAVYHWSMEGESQPVK	1	Oxidation (M)	3189.5441	0.54409981	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	1		2	95.177	86.651	3;4	6.6336E-59	46794	160513_QHF_FH_JSI12Kac_6	181.05	170.53			1.0949	1.1283	36.034	5	1	Median	1.7791	1.5385	43.853	2	0	Median	1.0949	1.2656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81328	0.87416	3.7535	2	0	Median	517950000	231400000	286550000	177360000	61785000	115570000	56477000	36067000	20410000	0	0	0	284120000	133550000	150570000	57874	2155	54522	352528;352529;352530;352531;352532	475816;475817;475818;475819;475820;475821;475822;475823	475819		1802	8	
WISSGEYIQMSGR	0	Unmodified	1512.7031	0.70311306	1532	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	3	2	3	56.583	55.776	2	4.6662E-05	49424	160511_QHF_FH_JSI11i_3	113.03	99.434			0.94719	0.99708	16.027	8	3	Median	1.2117	1.0541	NaN	1	0	Median	0.87821	1.0778	17.425	3	2	Median	0.89136	0.87443	10.697	2	1	Median	1.0102	1.0427	25.876	2	0	Median	521810000	255760000	266050000	42384000	17721000	24663000	167560000	95666000	71899000	153980000	71347000	82635000	157880000	71022000	86855000	57875	1532	54523	352533;352534;352535;352536;352537;352538;352539;352540;352541	475824;475825;475826;475827;475828;475829;475830;475831;475832;475833;475834;475835;475836	475825			13	
WISYTYLYVR	0	Unmodified	1362.6972	0.69722304	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.993	71.709	2	0.00016159	37602	160513_QHF_FH_JSI12Kac_6	96.948	84.332			0.90491	0.95514	13.856	4	0	Median	0.94367	0.79102	NaN	1	0	Median	0.8078	0.97113	NaN	1	0	Median	1.1722	1.1075	NaN	1	0	Median	0.86774	0.93942	NaN	1	0	Median	672290000	349870000	322420000	175070000	89420000	85648000	300940000	163440000	137500000	134040000	58926000	75109000	62242000	38076000	24166000	57876	3516	54524	352542;352543;352544;352545	475837;475838;475839;475840;475841;475842	475840			6	
WITEEQPNSATNLR	0	Unmodified	1657.806	0.80599822	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	45.363	44.571	2	0.0010578	38135	160511_QHF_FH_JSI12i_2	81.625	66.653			0.89902	0.93728	33.083	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96278	0.95391	46.764	2	2	Median	0.89902	0.93728	NaN	1	1	Median	57495000	32866000	24629000	0	0	0	0	0	0	40860000	21791000	19069000	16634000	11074000	5560200	57877	3819	54525	352546;352547;352548;352549;352550	475843;475844;475845;475846;475847	475843			5	
WITPAFQIHK	1	Unmodified	1239.6764	0.67642802	5438	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.317	60.492	3	1.1291E-05	53305	160511_QHF_FH_JSI11i_3	79.974	68.761			1.1116	1.0917	5.4286	4	0	Median	1.4047	1.1424	NaN	1	0	Median	0.93388	1.0451	NaN	1	0	Median	1.1108	1.0336	NaN	1	0	Median	1.1123	1.1404	NaN	1	0	Median	680050000	349830000	330230000	142780000	68762000	74022000	135700000	68961000	66737000	134600000	63425000	71173000	266970000	148680000	118290000	57878	5438	54526	352551;352552;352553;352554	475848;475849;475850;475851;475852;475853;475854;475855;475856;475857	475848			10	
WITPVLLLIDFYEK	1	Unmodified	1748.9753	0.97529538	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	101.12	92.677	2;3	1.4159E-11	56092	160513_QHF_FH_JSI10Kac_6	147.71	126.84			1.0596	1.1509	42.077	7	0	Median	1.2543	1.0855	24.39	2	0	Median	0.85519	1.026	16.246	2	0	Median	1.4988	1.4733	NaN	1	0	Median	0.65108	0.69816	74.509	2	0	Median	1039500000	581840000	457630000	358710000	176770000	181950000	581270000	328100000	253170000	11319000	6082200	5236500	88166000	70889000	17278000	57879	3290	54527	352555;352556;352557;352558;352559;352560;352561;352562	475858;475859;475860;475861;475862;475863;475864;475865;475866;475867;475868;475869;475870	475868			13	
WITVGNCLHK	1	Unmodified	1226.623	0.62301224	1110	P17152	TMEM11	Transmembrane protein 11, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	42.696	41.818	3	0.012726	35195	160511_QHF_FH_JSI10i_3	41.54	32.586			0.43034	0.47156	33.718	2	2	Median	NaN	NaN	NaN	0	0	Median	0.31269	0.37152	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59225	0.59852	NaN	1	1	Median	104850000	61179000	43674000	0	0	0	19038000	13806000	5232000	0	0	0	85815000	47373000	38442000	57880	1110	54528	352563;352564	475871;475872	475871			2	
WIVALTHSER	0	Unmodified	1210.6459	0.64585618	2989	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	54.876	45.667	3	0.0029694	25137	160513_QHF_FH_JSI10Kac_6	48.442	34.93			0.81591	0.93002	3.0646	3	0	Plateau	1.0874	0.91803	NaN	1	0	Median	0.78538	0.93002	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81591	0.87729	NaN	1	0	Median	54023000	23490000	30532000	17011000	6132600	10879000	30426000	14282000	16145000	0	0	0	6584900	3076000	3508900	57881	2989	54529	352565;352566;352567	475873;475874	475874			2	
WIVLFPEGGFLR	0	Unmodified	1432.7867	0.78670675	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.348	89.627	2	0.0053869	51692	160513_QHF_FH_JSI10Kac_6	75.294	49.356			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57882	3855	54530	352568	475875	475875			1	
WIVLFPEGGFLRK	1	Unmodified	1560.8817	0.88166977	3855	Q92604	LPGAT1	Acyl-CoA:lysophosphatidylglycerol acyltransferase 1	yes	yes	0	0	0	1	By MS/MS			By matching	16	0									2	1			1	89.328	80.273	3	0.0027413	44592	160513_QHF_FH_JSI9Kac_6	48.14	31.201			1.1586	1.094	12.59	2	0	Median	1.1769	1.0008	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1406	1.1959	NaN	1	0	Median	44553000	20455000	24099000	25980000	9706400	16274000	0	0	0	0	0	0	18573000	10748000	7825000	57883	3855	54531	352569;352570	475876	475876			1	
WIVNLIR	0	Unmodified	912.55452	0.55452197	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.17	6.63		3	4						5	3	3	3	3	76.357	72.338	2	0.01003	64833	160511_QHF_FH_JSI11i_2	76.592	45.873			0.88638	0.9126	14.449	12	0	Median	1.1618	1.01	19.498	3	0	Median	0.84503	0.98438	5.1795	3	0	Plateau	0.91474	0.86578	10.759	3	0	Median	0.74685	0.76994	15.69	3	0	Plateau	2801500000	1459800000	1341800000	532200000	232810000	299400000	1272600000	679150000	593470000	613030000	331370000	281660000	383690000	216450000	167230000	57884	1909	54532	352571;352572;352573;352574;352575;352576;352577;352578;352579;352580;352581;352582	475877;475878;475879;475880;475881;475882;475883;475884;475885;475886;475887;475888;475889;475890;475891;475892;475893;475894;475895;475896;475897;475898;475899	475890			23	
WIVPGGGMEPEEEPSVAAVR	0	Unmodified	2109.0201	0.0200901	746	O95989	NUDT3	Diphosphoinositol polyphosphate phosphohydrolase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	78.238	77.036	2	0.000224	66557	160511_QHF_FH_JSI12i_2	62.89	57.506			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57885	746	54533	352583	475900	475900			1	
WIVSQMYK	1	Unmodified	1053.5317	0.53173762	2591	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.607	55.06	2	0.054734	46045	160511_QHF_FH_JSI10i_3	45.081	32.044			0.67456	0.77131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67456	0.77131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35100000	21655000	13445000	0	0	0	35100000	21655000	13445000	0	0	0	0	0	0	57886	2591	54534	352584	475901	475901			1	
WIYEDVER	0	Unmodified	1108.5189	0.51892433	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	46.675	45.691	2	0.00596	39309	160511_QHF_FH_JSI11i_2	60.59	41.807			0.74212	1.0696	24.371	3	2	Plateau	1.2786	1.1273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.74212	0.73185	NaN	1	1	Median	0.66427	0.74702	NaN	1	1	Median	129300000	74290000	55014000	32552000	12354000	20198000	0	0	0	50171000	30516000	19655000	46581000	31420000	15161000	57887	388	54535	352585;352586;352587;352588;352589	475902;475903;475904;475905;475906;475907	475907			6	
WKAYDATHLVK	2	Acetyl (K)	1372.7139	0.71393574	979	P10768	ESD	S-formylglutathione hydrolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	62.369	52.573	3	0.0010631	28561	160513_QHF_FH_JSI11Kac_6	72.496	61.177			0.19934	0.20664	203.55	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.050006	0.04899	NaN	1	1	Median	0.79465	0.87158	NaN	1	0	Median	34032000	27027000	7004800	0	0	0	0	0	0	20849000	19657000	1191700	13183000	7370100	5813100	57888	979	54536	352590;352591	475908;475909	475908	750		2	
WKDEDISQK	2	Unmodified	1147.551	0.55095274	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.223	16.223	3	0.030889	13378	160511_QHF_FH_JSI11i_3	25.296	15.65			0.86645	0.80683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86645	0.80683	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97190000	43239000	53951000	0	0	0	0	0	0	97190000	43239000	53951000	0	0	0	57889	1810	54537	352592	475910	475910			1	
WKDSDEADLVLAK	2	Unmodified	1488.746	0.74602373	2367	Q13185	CBX3	Chromobox protein homolog 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.496		9	7							2	3	5	6	53.23	52.611	2;3	6.8745E-06	44503	160511_QHF_FH_JSI12i_3	127.56	112.88			1.022	1.0464	33.439	14	10	Median	0.94614	0.8161	15.184	2	2	Median	1.022	1.2419	4.2564	2	2	Median	1.2488	1.2582	32.871	4	3	Median	0.72803	0.77683	39.702	6	3	Median	1978000000	893750000	1084200000	119140000	51996000	67144000	265330000	100980000	164350000	598360000	239950000	358420000	995120000	500830000	494290000	57890	2367	54538	352593;352594;352595;352596;352597;352598;352599;352600;352601;352602;352603;352604;352605;352606;352607;352608	475911;475912;475913;475914;475915;475916;475917;475918;475919;475920;475921;475922;475923;475924;475925;475926;475927;475928;475929;475930;475931;475932;475933;475934;475935;475936;475937	475929			27	
WKDTDEADLVLAK	2	Unmodified	1502.7617	0.76167379	1572	P45973	CBX5	Chromobox protein homolog 5	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4								1	3	2	54.713	54.396	2;3	0.000572	46300	160511_QHF_FH_JSI12i_3	98.105	86.885			1.1848	1.1417	24.647	6	3	Median	NaN	NaN	NaN	0	0	Median	0.56967	0.70657	NaN	1	1	Median	1.2522	1.2704	11.304	3	1	Median	1.0415	1.0548	10.567	2	1	Median	503300000	221830000	281470000	0	0	0	21769000	13360000	8409100	174970000	63600000	111370000	306570000	144870000	161700000	57891	1572	54539	352609;352610;352611;352612;352613;352614	475938;475939;475940;475941;475942;475943;475944;475945	475942			8	
WKFLEHK	2	Acetyl (K)	1028.5444	0.54435122	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.121	46.393	3	0.023255	25071	160513_QHF_FH_JSI11Kac_6	51.346	32.906			0.26197	0.25588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26197	0.25588	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6471400	5367300	1104100	0	0	0	0	0	0	6471400	5367300	1104100	0	0	0	57892	998	54540	352615	475946	475946	792		1	
WKPADLK	2	Unmodified	856.48069	0.48068833	3075	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	26.461	25.761	3	0.0406	21116	160511_QHF_FH_JSI9i_3	35.295	19.633			0.68765	0.62036	30.434	2	2	Median	0.60608	0.50024	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7802	0.76931	NaN	1	1	Median	290770000	136110000	154660000	70787000	31448000	39339000	0	0	0	0	0	0	219990000	104660000	115320000	57893	3075	54541	352616;352617	475947;475948	475947			2	
WKPGSLASHVK	2	Unmodified	1208.6666	0.66659162	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			10							2	5	3		29.263	28.354	3;4	0.0003586	24416	160511_QHF_FH_JSI10i_3	75.819	65.448			0.64223	0.77176	72.881	9	3	Median	0.64899	0.52186	70.448	2	0	Median	0.6397	0.75371	51.121	4	2	Median	0.92621	0.86798	108.24	3	1	Median	NaN	NaN	NaN	0	0	Median	1063100000	546210000	516840000	281760000	150660000	131090000	301060000	159560000	141500000	480240000	235990000	244240000	0	0	0	57894	850	54542	352618;352619;352620;352621;352622;352623;352624;352625;352626;352627	475949;475950;475951;475952;475953;475954;475955;475956;475957;475958;475959;475960;475961;475962	475956			14	
WKPPMIDNPSYQGIWK	2	Oxidation (M)	1974.9662	0.96620404	1299	P27824	CANX	Calnexin	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			19							6	7	3	3	75.944	75.033	3	6.7667E-07	61315	160511_QHF_FH_JSI9i_3	127.88	118.46			0.82439	0.82471	28.097	15	4	Median	1.0125	0.81207	16.286	5	0	Median	0.72823	0.83979	29.564	4	1	Median	1.1537	1.0906	59.193	3	1	Plateau	0.79961	0.80816	1.1734	3	2	Median	1577200000	884490000	692740000	420110000	213700000	206400000	442610000	265030000	177580000	269740000	151610000	118130000	444770000	254150000	190620000	57895	1299	54543	352628;352629;352630;352631;352632;352633;352634;352635;352636;352637;352638;352639;352640;352641;352642;352643;352644;352645;352646	475963;475964;475965;475966;475967;475968;475969;475970;475971;475972;475973;475974;475975;475976;475977;475978;475979;475980;475981;475982;475983;475984;475985;475986;475987;475988;475989;475990;475991;475992;475993;475994;475995	475980		947	32	
WKPPMIDNPSYQGIWK	2	Unmodified	1958.9713	0.97128941	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	4.74			16						3	8	6	2	3	81.81	79.721	2;3	8.4366E-08	67342	160511_QHF_FH_JSI10i_3	137.52	116.28			0.78679	0.81733	31.528	19	4	Median	0.82602	0.67651	35.021	8	2	Median	0.76036	0.87698	22.23	6	1	Median	1.0453	0.98334	5.7911	2	0	Median	0.78679	0.81733	31.939	3	1	Median	9479600000	4758300000	4721400000	1533500000	781600000	751870000	1552700000	846300000	706380000	3353100000	1591300000	1761800000	3040400000	1539100000	1501300000	57896	1299	54543	352647;352648;352649;352650;352651;352652;352653;352654;352655;352656;352657;352658;352659;352660;352661;352662;352663;352664;352665	475996;475997;475998;475999;476000;476001;476002;476003;476004;476005;476006;476007;476008;476009;476010;476011;476012;476013;476014;476015;476016;476017;476018;476019;476020;476021;476022;476023;476024;476025;476026;476027;476028;476029;476030;476031;476032;476033;476034;476035;476036;476037;476038;476039;476040;476041;476042	476006			46	
WKPPQGTDSIK	2	Unmodified	1255.6561	0.65608651	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	31.265	30.414	2;3	0.0033809	24956	160511_QHF_FH_JSI9i_3	47.062	42.596			0.99602	0.84066	17.999	5	0	Median	1.1052	0.87573	5.779	2	0	Median	0.99602	1.1442	NaN	1	0	Median	0.80047	0.75212	NaN	1	0	Median	0.7316	0.73148	NaN	1	0	Median	4810200000	2321600000	2488600000	1407900000	587230000	820650000	940150000	426220000	513930000	1032000000	470060000	561970000	1430100000	838100000	592040000	57897	5315	54544	352666;352667;352668;352669;352670	476043;476044;476045;476046;476047;476048;476049;476050	476048			8	
WKPSEMK	2	Unmodified	904.44767	0.44767364	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	18.736	18.762	3	0.032922	15121	160511_QHF_FH_JSI12i_3	35.295	35.295			1.1939	1.2065	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1939	1.2065	NaN	1	0	Median	120120000	67976000	52147000	0	0	0	0	0	0	0	0	0	120120000	67976000	52147000	57898	4152	54545	352671	476051	476051			1	
WKQPLTVIVTPVSK	2	Unmodified	1594.9447	0.94466396	4133	Q96J02	ITCH	E3 ubiquitin-protein ligase Itchy homolog	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				68.918	67.43	3	0.0041579	55340	160511_QHF_FH_JSI9i_3	55.724	45.652			0.83871	0.70111	NaN	1	1	Median	0.83871	0.70111	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14308000	8640800	5667500	14308000	8640800	5667500	0	0	0	0	0	0	0	0	0	57899	4133	54546	352672	476052	476052			1	
WKVPTYK	2	Unmodified	920.51199	0.51198846	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	34.162	33.567	3	0.0035541	27622	160511_QHF_FH_JSI9i_3	79.116	60.385			1.2015	1.0637	23.877	5	1	Median	1.2015	0.96193	NaN	1	0	Median	0.90559	1.0637	NaN	1	0	Median	1.3678	1.2539	37.475	2	1	Median	1.3619	1.394	NaN	1	0	Median	978350000	437950000	540400000	212940000	86710000	126230000	197440000	93876000	103560000	304000000	141440000	162560000	263970000	115920000	148050000	57900	2094	54547	352673;352674;352675;352676;352677	476053;476054;476055;476056;476057;476058;476059;476060	476059			8	
WLAGDVPAAR	0	Unmodified	1054.556	0.55597854	623	O94906	PRPF6	Pre-mRNA-processing factor 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	43.197	42.228	2	0.01167	36266	160511_QHF_FH_JSI11i_2	46.158	31.376			1.2521	1.3856	7.4695	4	0	Median	1.6245	1.3776	NaN	1	0	Median	1.1416	1.4132	NaN	1	0	Median	1.3733	1.3936	NaN	1	0	Median	1.1224	1.203	NaN	1	0	Median	323950000	132860000	191090000	60903000	22932000	37971000	70073000	22819000	47254000	110860000	51331000	59529000	82108000	35776000	46332000	57901	623	54548	352678;352679;352680;352681	476061;476062;476063;476064	476063			4	
WLAIDANAR	0	Unmodified	1028.5403	0.54032847	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.81		4	1					1	4	2	3	2	3	51.483	46.271	2	0.00018709	39908	160511_QHF_FH_JSI12i_2	86.095	74.584			0.93779	1.0332	18.299	10	2	Median	1.2828	1.097	34.463	2	1	Median	0.70357	0.86328	11.456	3	1	Plateau	1.0219	1.0236	19.778	2	0	Median	0.96025	1.0629	19.295	3	0	Median	1652300000	873510000	778750000	226450000	105320000	121130000	358290000	201700000	156590000	606790000	332870000	273920000	460730000	233610000	227110000	57902	2585	54549	352682;352683;352684;352685;352686;352687;352688;352689;352690;352691	476065;476066;476067;476068;476069;476070;476071;476072;476073;476074;476075	476066			11	
WLALGSSGGGLHLIQK	1	Unmodified	1635.9097	0.90967544	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		75.187	74.468	3	0.0024299	61555	160511_QHF_FH_JSI9i_3	53.981	42.189			0.86912	0.749	51.041	2	1	Median	0.6411	0.52208	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1782	1.0746	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69456000	36542000	32914000	37349000	21277000	16072000	0	0	0	32107000	15265000	16842000	0	0	0	57903	5472	54550	352692;352693	476076;476077	476077			1	
WLAPDGLIFPDR	0	Unmodified	1398.7296	0.7295858	4325	Q99873	PRMT1	Protein arginine N-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							2	3	3	2	91.179	90.572	2	4.2299E-05	78218	160511_QHF_FH_JSI12i_2	101.38	82.287			0.90003	0.9684	2.5528	9	2	Median	1.1653	0.97662	0.40314	2	0	Median	0.78258	0.9684	1.9372	3	2	Plateau	0.98069	0.95556	5.0563	2	0	Median	0.89349	0.94719	1.4152	2	0	Median	1726100000	891180000	834950000	237940000	105220000	132720000	407530000	234660000	172870000	638140000	324410000	313730000	442510000	226890000	215630000	57904	4325	54551	352694;352695;352696;352697;352698;352699;352700;352701;352702;352703	476078;476079;476080;476081;476082;476083;476084;476085;476086;476087;476088;476089;476090;476091;476092;476093;476094;476095;476096;476097;476098;476099;476100	476082			23	
WLAVDYENVRPDIVLLGK	1	Unmodified	2099.1415	0.14152586	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	100.55	100.56	3	0.00077448	89610	160511_QHF_FH_JSI11i_3	61.102	53.148			1.0013	1.057	9.507	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1194	1.057	NaN	1	1	Median	1.0013	1.0091	12.901	2	2	Median	268490000	141360000	127130000	0	0	0	0	0	0	54024000	22244000	31780000	214470000	119120000	95352000	57905	808	54552	352704;352705;352706	476101;476102;476103	476101			3	
WLAVLYFK	1	Unmodified	1038.5902	0.59023878	5323	Q9UI26	IPO11	Importin-11	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		86.951	77.628	1	0.01772	43176	160513_QHF_FH_JSI11Kac_6	60.294	53.844			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9912800	0	9912800	0	0	0	0	0	0	9912800	0	9912800	0	0	0	57906	5323	54553	352707	476104	476104			1	
WLCLHQK	1	Unmodified	983.50111	0.50110619	245	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		5.5647	5.5647	3	0.035378	3252	160511_QHF_FH_JSI11i_3	23.972	0			1.1927	1.1273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1927	1.1273	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	268030000	121160000	146860000	0	0	0	0	0	0	268030000	121160000	146860000	0	0	0	57907	245	54554	352708	476105	476105			1	
WLCPLSGKK	2	Unmodified	1087.5848	0.58483582	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	33.792	33.682	3	0.011823	28524	160511_QHF_FH_JSI12i_3	43.308	36.648			1.5137	1.5352	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5137	1.5352	NaN	1	1	Median	28708000	12504000	16205000	0	0	0	0	0	0	0	0	0	28708000	12504000	16205000	57908	4521	54555	352709	476106	476106			1	
WLDDIGLPQYK	1	Unmodified	1346.6871	0.68705229	3353	Q86W92	PPFIBP1	Liprin-beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.75	0.433	1	3								1	2	1		77.548	76.978	2	0.012925	68612	160511_QHF_FH_JSI10i_2	53.327	38.176			0.78172	0.85677	25.178	4	0	Median	1.2616	1.1023	NaN	1	0	Median	0.60025	0.71028	24.291	2	0	Median	0.83977	0.87038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	104450000	57967000	46487000	18887000	9460800	9426000	49757000	27657000	22100000	35810000	20849000	14961000	0	0	0	57909	3353	54556	352710;352711;352712;352713	476107;476108;476109	476109			3	
WLDFGEVSTQEALK	1	Unmodified	1621.7988	0.79878758	4079	Q96FZ2	HMCES	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			82.16	81.494	2	0.013357	72582	160511_QHF_FH_JSI10i_2	55.04	27.711			0.45936	0.56141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.45936	0.56141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39046000	28565000	10481000	0	0	0	39046000	28565000	10481000	0	0	0	0	0	0	57910	4079	54557	352714	476110	476110			1	
WLDGIRK	1	Unmodified	886.50249	0.5024864	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			10							5	3	2		27.717	26.638	2;3	0.0040217	22321	160511_QHF_FH_JSI11i_3	59.205	32.603			0.67726	0.78485	62.334	10	1	Median	0.5932	0.48528	89.506	5	1	Median	0.66977	0.77055	27.216	3	0	Median	0.97474	0.92825	7.1032	2	0	Median	NaN	NaN	NaN	0	0	Median	2782900000	1133200000	1649700000	1077700000	388180000	689500000	806850000	405300000	401560000	898370000	339740000	558620000	0	0	0	57911	1066	54558	352715;352716;352717;352718;352719;352720;352721;352722;352723;352724	476111;476112;476113;476114;476115;476116;476117;476118;476119;476120;476121;476122	476112			12	
WLEAQIIQAR	0	Unmodified	1226.6772	0.6771563	2933	Q5T0F9	CC2D1B	Coiled-coil and C2 domain-containing protein 1B	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.119	60.607	2	0.025656	52689	160511_QHF_FH_JSI11i_2	48.283	37.76			7.8212	7.643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.8212	7.643	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13629000	3666000	9962600	0	0	0	0	0	0	13629000	3666000	9962600	0	0	0	57912	2933	54559	352725	476123	476123			1	
WLEASEEER	0	Unmodified	1147.5146	0.51456723	2496	Q14137	BOP1	Ribosome biogenesis protein BOP1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.585	24.326	2	0.038799	20288	160511_QHF_FH_JSI12i_2	46.462	28.426			0.69573	0.74284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69573	0.74284	NaN	1	1	Median	17380000	10374000	7005700	0	0	0	0	0	0	0	0	0	17380000	10374000	7005700	57913	2496	54560	352726	476124	476124			1	
WLFPTSMR	0	Unmodified	1036.5164	0.51642191	5424	Q9UMR5	PPT2	Lysosomal thioesterase PPT2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	73.135	72.335	2	0.022642	62689	160511_QHF_FH_JSI12i_3	43.769	34.253			0.96129	0.8995	23.199	4	1	Median	0.91953	0.77293	NaN	1	0	Median	0.67119	0.78147	NaN	1	0	Median	1.3112	1.2467	NaN	1	1	Median	1.005	1.0354	NaN	1	0	Median	145830000	72048000	73786000	34103000	18029000	16074000	24707000	14177000	10530000	36982000	13617000	23365000	50042000	26225000	23817000	57914	5424	54561	352727;352728;352729;352730	476125;476126	476126			2	
WLFSTNHK	1	Unmodified	1031.5189	0.51886475	766	P00395	MT-CO1	Cytochrome c oxidase subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	3	3	2	1	39.719	37.065	2;3	0.00018244	31768	160511_QHF_FH_JSI11i_3	87.181	70.978			0.83022	0.84475	11.741	9	0	Median	1.045	0.84608	11.721	3	0	Median	0.77835	0.89413	14.792	3	0	Median	0.78785	0.735	2.2148	2	0	Median	0.83441	0.84475	NaN	1	0	Median	2241500000	1193700000	1047800000	579950000	264520000	315430000	522590000	309030000	213560000	386550000	202320000	184230000	752450000	417860000	334600000	57915	766	54562	352731;352732;352733;352734;352735;352736;352737;352738;352739	476127;476128;476129;476130;476131;476132;476133;476134;476135;476136;476137;476138;476139	476128			13	
WLGDLILSK	1	Unmodified	1043.6015	0.60153174	540	O75530	EED	Polycomb protein EED	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	82.145	81.408	2	0.014604	70352	160511_QHF_FH_JSI12i_2	45.161	28.621			0.98507	1.0844	24.379	5	2	Median	1.0465	0.91127	40.15	2	2	Median	0.76378	0.92865	NaN	1	0	Median	1.2476	1.2436	NaN	1	0	Median	0.98507	1.0844	NaN	1	0	Median	118250000	58111000	60136000	28860000	14273000	14586000	36495000	22884000	13611000	31061000	12124000	18937000	21831000	8829900	13001000	57916	540	54563	352740;352741;352742;352743;352744	476140;476141;476142;476143;476144;476145;476146	476140			7	
WLGEPIK	1	Unmodified	841.46979	0.46978929	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	42.182	41.203	2	0.01534	35297	160511_QHF_FH_JSI12i_2	64.803	38.694			0.92524	0.90339	55.628	6	2	Median	0.57721	0.48973	66.311	2	1	Median	0.58535	0.72625	73.043	2	1	Median	1.0164	1.0427	NaN	1	0	Median	0.93112	1.0462	NaN	1	0	Median	887120000	466630000	420490000	238240000	138500000	99738000	285950000	162310000	123640000	224460000	105420000	119040000	138470000	60394000	78072000	57917	197	54564	352745;352746;352747;352748;352749;352750	476147;476148;476149;476150;476151	476147			5	
WLGEQLK	1	Unmodified	872.4756	0.47560295	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By matching	By matching		By MS/MS	2	0		3								1	1		1	39.18	38.054	2	0.011877	32392	160511_QHF_FH_JSI12i_2	70.268	21.764			1.1559	0.99528	25.038	3	0	Median	1.18	0.99528	NaN	1	0	Median	1.1559	1.4105	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77524	0.86792	NaN	1	0	Median	209310000	107140000	102170000	53413000	23568000	29845000	85666000	48555000	37111000	0	0	0	70232000	35018000	35214000	57918	3111	54565	352751;352752;352753	476152	476152			1	
WLGESEK	1	Unmodified	847.40758	0.40758296	507;5432	O75351;Q9UN37	VPS4B;VPS4A	Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	18.203	17.474	2	0.027977	14100	160511_QHF_FH_JSI11i_2	55.676	32.657			0.93612	0.95539	18.112	4	2	Median	0.92739	0.7836	NaN	1	0	Median	0.94493	1.1751	NaN	1	1	Median	1.042	1.0456	NaN	1	1	Median	0.77352	0.87294	NaN	1	0	Median	351040000	176520000	174520000	71848000	35822000	36027000	67586000	32853000	34733000	118900000	58885000	60011000	92710000	48958000	43752000	57919	507;5432	54566	352754;352755;352756;352757	476153;476154;476155	476154			3	
WLGGAVEDYFMR	0	Unmodified	1442.6653	0.66527099	3934	Q969E8	TSR2	Pre-rRNA-processing protein TSR2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	88.913	88.408	2	0.00069572	76282	160511_QHF_FH_JSI12i_2	71.016	54.443			0.93382	0.92498	9.4673	3	0	Plateau	1.2303	1.0742	NaN	1	0	Median	0.93382	1.1022	NaN	1	0	Median	0.93297	0.92498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69558000	35950000	33608000	18965000	7047400	11917000	17246000	8953000	8293100	33347000	19950000	13397000	0	0	0	57920	3934	54567	352758;352759;352760;352761;352762	476156;476157;476158;476159;476160;476161;476162	476156			7	
WLGLEEACQLAQFK	1	Unmodified	1691.8341	0.83412723	1713	P50583	NUDT2	Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	94.826	94.502	2	2.8355E-07	81549	160511_QHF_FH_JSI12i_2	91.855	74.829			0.8951	1.0013	53.446	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1762	1.4611	NaN	1	0	Median	0.68117	0.68616	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48669000	22514000	26155000	0	0	0	24454000	11450000	13004000	24215000	11064000	13151000	0	0	0	57921	1713	54568	352763;352764;352765	476163;476164;476165	476163			3	
WLGVLLPK	1	Unmodified	924.57967	0.57967409	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	3.69		3	8						1	3	3	4	2	78.785	77.332	2	0.018844	69290	160511_QHF_FH_JSI11i_3	57.559	47.572			0.58198	0.61532	71.337	12	11	Median	1.0691	0.42596	82.732	3	3	Plateau	0.49815	0.63763	59.368	3	3	Median	1.0192	0.97434	93.156	4	3	Median	1.0204	1.0471	80.218	2	2	Median	732490000	329740000	402750000	122490000	54266000	68221000	129240000	68270000	60973000	205240000	76921000	128320000	275520000	130280000	145240000	57922	1094	54569	352766;352767;352768;352769;352770;352771;352772;352773;352774;352775;352776;352777	476166;476167;476168;476169;476170;476171;476172;476173;476174;476175;476176;476177;476178;476179;476180;476181	476166			16	
WLHFYEMK	1	Unmodified	1152.5426	0.54263666	4646	Q9H0W9	C11orf54	Ester hydrolase C11orf54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	2	1	5	5	62.135	58.027	3	0.0023402	50166	160511_QHF_FH_JSI12i_3	57.598	43.392			0.81441	0.77245	32.381	9	1	Median	1.0547	0.9091	NaN	1	0	Median	0.5224	0.63589	NaN	1	0	Median	0.83393	0.78969	13.38	4	1	Median	0.78621	0.76612	53.382	3	0	Median	205370000	102020000	103350000	11128000	5351600	5776100	26759000	16496000	10263000	80487000	40867000	39620000	86992000	39306000	47686000	57923	4646	54570	352778;352779;352780;352781;352782;352783;352784;352785;352786;352787;352788;352789;352790	476182;476183;476184;476185;476186;476187;476188;476189;476190;476191;476192;476193;476194	476191			13	
WLHGLESQIQSDDYGK	1	Unmodified	1874.8799	0.87989145	2162	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	55.119	54.998	2;3	9.3388E-05	48731	160511_QHF_FH_JSI11i_3	79.652	71.738			0.43016	0.41689	21.798	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38479	0.35734	NaN	1	1	Median	0.48087	0.48636	NaN	1	1	Median	248490000	163980000	84508000	0	0	0	0	0	0	98899000	70388000	28512000	149590000	93596000	55996000	57924	2162	54571	352791;352792;352793;352794	476195;476196;476197;476198	476195			4	
WLHNEDQMAVEK	1	Unmodified	1498.6875	0.68746299	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.35	0.478		20	11							7	2	10	12	32.812	32.186	2;3	2.3879E-05	26629	160511_QHF_FH_JSI12i_3	132.78	116.53			0.80364	0.83767	117.08	28	18	Median	1.0645	0.92749	61.149	6	4	Median	0.80364	0.99392	8.7564	2	0	Median	0.61976	0.62073	158.09	9	7	Median	0.63501	0.68791	116.22	11	7	Median	4496700000	2240100000	2256600000	577990000	208760000	369230000	451540000	229950000	221600000	1487900000	707090000	780820000	1979200000	1094300000	884960000	57925	1471	54572	352795;352796;352797;352798;352799;352800;352801;352802;352803;352804;352805;352806;352807;352808;352809;352810;352811;352812;352813;352814;352815;352816;352817;352818;352819;352820;352821;352822;352823;352824;352825	476199;476200;476201;476202;476203;476204;476205;476206;476207;476208;476209;476210;476211;476212;476213;476214;476215;476216;476217;476218;476219;476220;476221;476222;476223;476224;476225;476226;476227;476228;476229;476230;476231;476232;476233;476234;476235;476236;476237;476238	476237			38	
WLHNEDQMAVEK	1	Oxidation (M)	1514.6824	0.68237762	1471	P37837	TALDO1	Transaldolase	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			4									2	2	24.237	24.238	2;3	0.0019426	16847	160511_QHF_FH_JSI12i_3	61.167	54.481			0.44452	0.45951	65.98	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1501	1.114	NaN	1	1	Median	0.86093	0.87582	91.218	2	2	Median	303040000	173290000	129750000	0	0	0	0	0	0	64056000	29372000	34684000	238990000	143920000	95064000	57926	1471	54572	352826;352827;352828;352829	476239;476240;476241;476242	476242		1144	4	
WLHQQTEK	1	Unmodified	1068.5352	0.53524309	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	8.8657	8.9145	2	0.0049375	6586	160511_QHF_FH_JSI11i_3	67.169	42.247			1.0211	0.99952	54.617	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5575	1.4707	NaN	1	0	Median	0.66942	0.6793	NaN	1	0	Median	203770000	85433000	118340000	0	0	0	0	0	0	84598000	38324000	46274000	119170000	47109000	72066000	57927	5135	54573	352830;352831	476243;476244;476245;476246	476243			4	
WLHSMTDDPPTTK	1	Unmodified	1527.7028	0.70277871	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	33.97	33.897	2;3	0.0027757	28620	160511_QHF_FH_JSI12i_3	54.871	49.792			1.1628	1.1846	87.648	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.46776	0.44237	NaN	1	1	Median	1.6883	1.735	53.974	2	2	Median	276910000	146980000	129920000	0	0	0	0	0	0	19344000	12668000	6675700	257560000	134320000	123250000	57928	5319	54574	352832;352833;352834	476247;476248;476249	476248			3	
WLITLNK	1	Unmodified	886.52764	0.52763852	853	P06730	EIF4E	Eukaryotic translation initiation factor 4E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	70.319	66.852	2	0.0076848	59474	160511_QHF_FH_JSI11i_3	86.512	9.1381			1.0672	1.1565	27.527	12	0	Median	2.1459	1.7127	43.672	3	0	Plateau	1.039	1.1682	29.567	3	0	Median	1.3659	1.2835	24.999	3	0	Median	0.87153	0.92484	13.154	3	0	Median	3001600000	1123000000	1878600000	640920000	199500000	441420000	756520000	338890000	417630000	872380000	330110000	542270000	731750000	254490000	477260000	57929	853	54575	352835;352836;352837;352838;352839;352840;352841;352842;352843;352844;352845;352846	476250;476251;476252;476253;476254;476255;476256;476257;476258;476259;476260;476261;476262;476263;476264;476265;476266;476267;476268;476269;476270;476271;476272	476250			23	
WLLAEMLGDLSDSQLK	1	Unmodified	1817.9233	0.92333617	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							1	2	4	4	102.52	102.46	2;3	8.2673E-31	89291	160511_QHF_FH_JSI12i_3	196.15	168.67			0.85473	0.93591	13.327	11	1	Median	1.1904	1.0093	NaN	1	0	Median	0.83898	1.0292	6.3113	2	0	Median	0.88589	0.86457	11.676	4	1	Median	0.75477	0.81145	15.358	4	0	Median	1014200000	522280000	491970000	51189000	22939000	28250000	95758000	50173000	45585000	335540000	169940000	165610000	531760000	279230000	252530000	57930	5247	54576	352847;352848;352849;352850;352851;352852;352853;352854;352855;352856;352857	476273;476274;476275;476276;476277;476278;476279;476280;476281;476282;476283;476284;476285;476286;476287;476288;476289;476290;476291;476292	476291			20	
WLLAEMLGDLSDSQLK	1	Oxidation (M)	1833.9183	0.91825079	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	103.34	103.34	3	0.016432	90128	160511_QHF_FH_JSI12i_3	35.329	29.297			1.3422	1.3349	44.212	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0129	0.97654	NaN	1	0	Median	1.7784	1.8249	NaN	1	0	Median	23714000	9075000	14639000	0	0	0	0	0	0	8348000	3374800	4973200	15366000	5700200	9665800	57931	5247	54576	352858;352859	476293;476294	476294		2614	2	
WLLEGTPSSASEGDEDLRR	0	Unmodified	2117.0025	0.0025257806	563	O75781	PALM	Paralemmin-1	yes	yes	0	0	0	1			By MS/MS		2.5	0.5		1	1									2		58.228	57.977	3	0.015174	50401	160511_QHF_FH_JSI11i_2	31.818	22.238			1.3381	1.333	36.432	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3381	1.333	36.432	2	2	Median	NaN	NaN	NaN	0	0	Median	116080000	54893000	61192000	0	0	0	0	0	0	116080000	54893000	61192000	0	0	0	57932	563	54577	352860;352861	476295;476296	476296			2	
WLLELSK	1	Unmodified	887.51165	0.5116541	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	71.495	70.609	2	0.025501	62674	160511_QHF_FH_JSI10i_2	54.549	26.037			0.98725	0.99909	9.5085	4	0	Median	1.1924	1.0071	NaN	1	0	Median	0.96408	1.1913	NaN	1	0	Median	1.011	0.99116	NaN	1	0	Median	0.847	0.96631	NaN	1	0	Median	144240000	69504000	74733000	22164000	9521600	12642000	30939000	15633000	15305000	55279000	27667000	27612000	35856000	16682000	19174000	57933	1435	54578	352862;352863;352864;352865	476297;476298;476299;476300;476301	476301			5	
WLLFFHFGK	1	Unmodified	1193.6386	0.63858595	3439	Q8IXB1	DNAJC10	DnaJ homolog subfamily C member 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	2	3	3	90.885	82.575	2;3	9.8071E-05	46043	160513_QHF_FH_JSI11Kac_6	83.005	73.052			1.011	0.93563	22.653	8	2	Median	1.011	0.86275	1.0491	2	0	Median	0.7274	0.86199	6.847	2	0	Median	1.1555	1.0905	16.921	2	1	Median	1.2167	1.2857	31.25	2	1	Median	2885200000	1358200000	1527000000	785210000	372410000	412810000	1171100000	567370000	603750000	535350000	255800000	279550000	393540000	162610000	230930000	57934	3439	54579	352866;352867;352868;352869;352870;352871;352872;352873;352874;352875	476302;476303;476304;476305;476306;476307;476308;476309;476310;476311;476312;476313;476314;476315;476316;476317;476318	476302			17	
WLLLNDPEDTSSGSK	1	Unmodified	1660.7944	0.79443049	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	72.268	71.582	2	6.5507E-05	62604	160511_QHF_FH_JSI11i_2	75.479	57.614			0.99471	1.0236	23.416	7	6	Median	1.1378	1.0236	NaN	1	1	Median	0.58044	0.69375	15.48	3	3	Plateau	1.2724	1.2038	NaN	1	1	Median	1.097	1.2009	6.9355	2	1	Median	342070000	178640000	163420000	36277000	17584000	18693000	126720000	78229000	48492000	66025000	21193000	44833000	113040000	61639000	51404000	57935	5161	54580	352876;352877;352878;352879;352880;352881;352882;352883	476319;476320;476321;476322;476323;476324;476325;476326	476324			8	
WLLLTGISAQQNR	0	Unmodified	1498.8256	0.82561145	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.78	6.51		6	8					1	8	7	6	6	4	82.925	79.203	2;3	1.198E-76	40299	160513_QHF_FH_JSI9Kac_6	240.18	219.31			1.206	1.245	14.06	23	3	Median	1.4652	1.245	11.888	7	0	Median	1.0556	1.2308	5.9769	6	0	Median	1.3741	1.3005	10.529	6	1	Median	1.0678	1.1089	20.455	4	2	Median	8809700000	4093800000	4715900000	2138300000	928630000	1209700000	4599200000	2142500000	2456700000	1345100000	643890000	701190000	727150000	378760000	348390000	57936	2155	54581	352884;352885;352886;352887;352888;352889;352890;352891;352892;352893;352894;352895;352896;352897;352898;352899;352900;352901;352902;352903;352904;352905;352906	476327;476328;476329;476330;476331;476332;476333;476334;476335;476336;476337;476338;476339;476340;476341;476342;476343;476344;476345;476346;476347;476348;476349;476350;476351;476352;476353;476354;476355;476356;476357;476358;476359;476360;476361	476351			35	
WLLQGIFSTTVLCQK	1	Unmodified	1792.9546	0.95457672	2172	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	2	3	3	96.353	89.641	2;3	4.6598E-43	46669	160513_QHF_FH_JSI12Kac_6	175.74	146.78			1.0736	1.1735	27.671	10	0	Median	0.91531	0.77359	26.614	2	0	Median	0.9806	1.1735	8.4707	2	0	Median	1.0264	0.98543	16.001	3	0	Median	1.5729	1.6675	11.958	3	0	Plateau	3059400000	1479200000	1580200000	350300000	192660000	157650000	1048600000	510860000	537690000	1088500000	538810000	549700000	572080000	236890000	335180000	57937	2172	54582	352907;352908;352909;352910;352911;352912;352913;352914;352915;352916	476362;476363;476364;476365;476366;476367;476368;476369;476370;476371;476372;476373;476374	476371			12	
WLLSDYVK	1	Unmodified	1022.5437	0.54368251	5366	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2	0		4								1	1	1	1	75.273	74.418	2	0.0055642	65309	160511_QHF_FH_JSI11i_2	65.252	52.264			0.72177	1.0445	21.707	4	1	Linear	1.691	1.4475	NaN	1	1	Median	0.90379	1.1022	NaN	1	0	Median	0.86848	0.8683	NaN	1	0	Median	0.91628	0.98987	NaN	1	0	Median	164540000	75358000	89179000	26980000	9960100	17020000	39511000	20057000	19453000	66603000	29552000	37051000	31443000	15789000	15654000	57938	5366	54583	352917;352918;352919;352920	476375;476376;476377;476378	476376			4	
WLLWPMLFPVAPR	0	Oxidation (M)	1640.8901	0.89012597	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	2	1	98.431	89.722	2;3	1.2646E-16	48913	160513_QHF_FH_JSI12Kac_6	140.14	125.46			1.1951	1.0689	22.827	6	0	Median	1.5955	1.351	40.381	2	0	Median	0.84663	0.99923	NaN	1	0	Median	1.2729	1.185	7.3201	2	0	Median	0.94373	0.99723	NaN	1	0	Median	1624400000	775360000	849060000	506860000	226400000	280460000	376730000	191490000	185240000	470750000	216870000	253880000	270080000	140600000	129480000	57939	4856	54584	352921;352922;352923;352924;352925;352926	476379;476380;476381;476382;476383;476384;476385;476386	476383		2543	8	
WLLWPMLFPVAPR	0	Unmodified	1624.8952	0.89521134	4856	Q9HCE1	MOV10	Putative helicase MOV-10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	3	2	100.18	91.638	2;3	2.3545E-09	52595	160513_QHF_FH_JSI11Kac_6	154.49	120.6			0.87047	1.0002	25.163	9	1	Median	1.5467	1.3078	10.868	2	0	Median	0.92428	1.1013	13.618	2	0	Median	0.79865	0.7493	31.189	3	1	Median	0.86463	0.90533	0.39213	2	0	Median	6320300000	3269200000	3051100000	1562000000	606730000	955290000	2450600000	1402100000	1048500000	1447700000	854490000	593240000	859940000	405910000	454040000	57940	4856	54584	352927;352928;352929;352930;352931;352932;352933;352934;352935	476387;476388;476389;476390;476391;476392;476393;476394;476395;476396;476397;476398;476399;476400;476401;476402	476391			16	
WLLYHELVLTTK	1	Unmodified	1514.8497	0.84970094	398	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									3		2	1		80.862	74.026	2;3	6.9401E-08	40939	160513_QHF_FH_JSI10Kac_6	108.7	94.579			2.388	2.8247	81.06	2	1	Median	NaN	NaN	NaN	0	0	Median	2.388	2.8247	81.06	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	465980000	196710000	269270000	0	0	0	419490000	150220000	269270000	46489000	46489000	0	0	0	0	57941	398	54585	352936;352937;352938	476403;476404;476405;476406	476405			4	
WLMHLAPGFK	1	Unmodified	1198.6321	0.63212037	4692	Q9H3H3	C11orf68	UPF0696 protein C11orf68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	2	1	2	70.055	69.222	3	0.00082247	59554	160511_QHF_FH_JSI12i_3	56.432	43.816			1.0772	1.0067	52.177	6	3	Median	1.1763	0.96926	NaN	1	0	Median	0.83169	0.96902	44.754	2	1	Median	1.2646	1.1842	NaN	1	1	Median	0.5477	0.57808	83.813	2	1	Median	190760000	91639000	99125000	27821000	14284000	13537000	39896000	18009000	21887000	45363000	19511000	25851000	77684000	39835000	37849000	57942	4692	54586	352939;352940;352941;352942;352943;352944	476407;476408;476409;476410;476411;476412;476413;476414;476415;476416;476417;476418	476417			12	
WLMVHVDK	1	Unmodified	1026.5321	0.53207197	4152	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	16	0									4	1	1	1	1	56.761	47.615	3	0.0037079	25847	160513_QHF_FH_JSI11Kac_6	56.258	32.228			1.0889	1.2984	20.36	3	0	Plateau	1.0544	0.90054	NaN	1	0	Median	1.0889	1.2984	NaN	1	0	Median	1.3165	1.2624	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53233000	24609000	28625000	11958000	5132700	6824900	22675000	11613000	11062000	18601000	7863000	10738000	0	0	0	57943	4152	54587	352945;352946;352947;352948	476419;476420;476421;476422;476423	476420			5	
WLNENAVEK	1	Unmodified	1101.5455	0.54547343	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.28	6.07	2	8	2				1	5		4	5	4	5	35.946	31.515	2	0.00025167	27650	160511_QHF_FH_JSI11i_1	84.213	32.358			0.57948	0.50454	67.449	12	9	Median	0.58174	0.48888	65.979	3	2	Median	0.44245	0.5207	68.054	5	4	Median	0.39287	0.38356	71.204	2	1	Median	0.81606	0.9109	94.185	2	2	Median	3029700000	1488300000	1541400000	589340000	343530000	245810000	527180000	244000000	283180000	557110000	239910000	317200000	1356000000	660810000	695220000	57944	1234	54588	352949;352950;352951;352952;352953;352954;352955;352956;352957;352958;352959;352960;352961;352962;352963;352964;352965;352966	476424;476425;476426;476427;476428;476429;476430;476431;476432;476433;476434;476435;476436;476437;476438;476439;476440;476441;476442;476443;476444;476445;476446	476424			23	
WLNVHYHCSGAPAAPLQ	0	Unmodified	1919.9101	0.91008614	2439	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	61.886	55.707	3	0.0016298	30134	160513_QHF_FH_JSI11Kac_6	52.522	47.313			1.0703	0.99983	30.656	6	0	Median	1.0207	0.88928	NaN	1	0	Median	0.78844	0.94781	NaN	1	0	Median	1.03	0.98502	9.6665	2	0	Median	1.6147	1.6629	19.284	2	0	Median	205340000	92147000	113190000	13250000	5985400	7264800	32114000	16990000	15124000	82312000	39229000	43083000	77663000	29942000	47721000	57945	2439	54589	352967;352968;352969;352970;352971;352972	476447;476448;476449;476450;476451;476452	476449			6	
WLPAGDALLQMITIHLPSPVTAQK	1	Oxidation (M)	2615.4145	0.4145296	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			14						14	5	7	8	8	99.469	95.16	2;3;4	2.5862E-149	47500	160513_QHF_FH_JSI12Kac_6	262.5	241.25			0.87246	0.89843	12.478	27	4	Median	1.1787	0.97067	3.4431	5	0	Median	0.82133	0.95553	7.4831	6	2	Median	0.8937	0.83926	15.917	8	2	Median	0.86966	0.89314	6.7902	8	0	Median	23988000000	12957000000	11031000000	3586100000	1738100000	1848000000	3591600000	2024800000	1566700000	6834100000	3665000000	3169100000	9976200000	5529300000	4446900000	57946	1033	54590	352973;352974;352975;352976;352977;352978;352979;352980;352981;352982;352983;352984;352985;352986;352987;352988;352989;352990;352991;352992;352993;352994;352995;352996;352997;352998;352999;353000	476453;476454;476455;476456;476457;476458;476459;476460;476461;476462;476463;476464;476465;476466;476467;476468;476469;476470;476471;476472;476473;476474;476475;476476;476477;476478;476479;476480;476481;476482;476483;476484;476485;476486;476487;476488;476489;476490;476491;476492	476487		644	40	
WLPAGDALLQMITIHLPSPVTAQK	1	Unmodified	2599.4196	0.41961498	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.7	6.63		5	14						21	6	11	12	11	100.7	96.225	2;3;4	5.0363E-246	53960	160513_QHF_FH_JSI10Kac_6	319.67	283.87			0.89462	0.92467	28.156	40	21	Median	0.91039	0.83305	42.341	6	3	Median	0.85314	0.93688	15.17	11	3	Median	1.4313	1.4208	37.613	12	8	Linear	0.89624	0.92905	16.016	11	7	Median	152620000000	73902000000	78720000000	19046000000	9818100000	9227600000	31615000000	15844000000	15771000000	59485000000	27430000000	32056000000	42476000000	20810000000	21665000000	57947	1033	54590	353001;353002;353003;353004;353005;353006;353007;353008;353009;353010;353011;353012;353013;353014;353015;353016;353017;353018;353019;353020;353021;353022;353023;353024;353025;353026;353027;353028;353029;353030;353031;353032;353033;353034;353035;353036;353037;353038;353039;353040	476493;476494;476495;476496;476497;476498;476499;476500;476501;476502;476503;476504;476505;476506;476507;476508;476509;476510;476511;476512;476513;476514;476515;476516;476517;476518;476519;476520;476521;476522;476523;476524;476525;476526;476527;476528;476529;476530;476531;476532;476533;476534;476535;476536;476537;476538;476539;476540;476541;476542;476543;476544;476545;476546;476547;476548;476549;476550	476547			56	
WLPAGTGPQAFSR	0	Unmodified	1386.7044	0.70443369	1710	P50552	VASP	Vasodilator-stimulated phosphoprotein	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				62.836	61.329	2	0.0094107	50381	160511_QHF_FH_JSI9i_3	49.3	43.52			1.7901	1.4761	NaN	1	0	Median	1.7901	1.4761	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27879000	13176000	14703000	27879000	13176000	14703000	0	0	0	0	0	0	0	0	0	57948	1710	54591	353041	476551	476551			1	
WLPAVIAASK	1	Unmodified	1054.6175	0.61751616	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	71.92	71.114	2	0.0021201	63352	160511_QHF_FH_JSI11i_3	61.78	61.78			1.0572	1.0273	10.871	4	0	Median	1.0456	0.84488	NaN	1	0	Median	0.90404	1.044	NaN	1	0	Median	1.0918	1.011	NaN	1	0	Median	1.069	1.0769	NaN	1	0	Median	394120000	201060000	193050000	83125000	37540000	45585000	70966000	42991000	27975000	89893000	50382000	39511000	150130000	70151000	79981000	57949	680	54592	353042;353043;353044;353045	476552;476553;476554;476555;476556	476552			5	
WLPELVEHAK	1	Unmodified	1220.6554	0.65535823	2187	Q02252	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.85	59.85	3	0.0043281	53162	160511_QHF_FH_JSI11i_3	45.126	36.397			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57950	2187	54593	353046	476557	476557			1	
WLPFFPK	1	Unmodified	933.51126	0.51126017	244	O15085	ARHGEF11	Rho guanine nucleotide exchange factor 11	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	92.362	91.852	2	0.016583	79608	160511_QHF_FH_JSI12i_3	62.842	54.688			1.3963	1.5685	71.851	2	1	Median	NaN	NaN	NaN	0	0	Median	2.1396	2.6069	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.91125	0.94367	NaN	1	0	Median	29282000	13945000	15337000	0	0	0	6595400	2685800	3909600	0	0	0	22687000	11259000	11428000	57951	244	54594	353047;353048	476558;476559;476560	476560			3	
WLPLEANPEVTNQFLK	1	Unmodified	1897.9938	0.993799	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	100.81	100.68	2;3	2.6607E-52	86535	160511_QHF_FH_JSI12i_2	222.49	199.27			0.84398	0.93553	17.656	7	1	Median	0.84398	0.71086	NaN	1	0	Median	0.72193	0.89087	6.9175	2	1	Median	0.81952	0.82857	26.117	2	0	Median	0.89957	1.0366	8.5634	2	0	Median	892320000	500260000	392060000	92773000	54574000	38200000	160410000	93876000	66535000	368210000	200290000	167920000	270930000	151520000	119410000	57952	1076	54595	353049;353050;353051;353052;353053;353054;353055	476561;476562;476563;476564;476565;476566;476567;476568;476569;476570	476562			10	
WLPLGLGLNHLGK	1	Unmodified	1416.8242	0.82415489	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.1	4.78			26						5	13	9	4	5	91.541	89.632	2;3	5.227E-17	42031	160513_QHF_FH_JSI11Kac_6	134.13	105.8			0.92089	0.89609	31.966	29	8	Median	1.057	0.90894	19.348	11	3	Median	0.74502	0.88888	50.667	9	2	Median	0.88239	0.83465	16.666	4	1	Median	0.88914	0.93354	23.632	5	2	Median	3473400000	1713000000	1760400000	596500000	290420000	306080000	1027600000	558220000	469400000	692200000	324310000	367900000	1157000000	540030000	616990000	57953	2370	54596	353056;353057;353058;353059;353060;353061;353062;353063;353064;353065;353066;353067;353068;353069;353070;353071;353072;353073;353074;353075;353076;353077;353078;353079;353080;353081;353082;353083;353084;353085;353086	476571;476572;476573;476574;476575;476576;476577;476578;476579;476580;476581;476582;476583;476584;476585;476586;476587;476588;476589;476590;476591;476592;476593;476594;476595;476596;476597;476598;476599;476600;476601;476602;476603;476604;476605;476606;476607;476608;476609;476610;476611;476612;476613;476614;476615;476616;476617;476618;476619;476620;476621;476622;476623;476624;476625;476626;476627;476628;476629;476630;476631	476597			61	
WLPQQNAAHFLLSTNDK	1	Unmodified	1982.001	0.0010096381	3018	Q66LE6	PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			76.281	74.842	3	3.9332E-05	61563	160511_QHF_FH_JSI9i_3	74.12	51.645			1.2	0.99758	NaN	1	0	Median	1.2	0.99758	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35194000	14990000	20204000	35194000	14990000	20204000	0	0	0	0	0	0	0	0	0	57954	3018	54597	353087;353088	476632;476633;476634	476634			3	
WLPVQESSTDDK	1	Unmodified	1403.6569	0.65687437	5715	Q9Y6A9	SPCS1	Signal peptidase complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	1	3	2	48.103	47.273	2	2.2701E-05	42678	160511_QHF_FH_JSI11i_1	110.38	102.16			1.1075	0.99973	69.56	8	0	Median	1.1075	0.92668	9.5491	2	0	Median	0.81695	1.0081	NaN	1	0	Median	1.224	1.1842	14.623	3	0	Median	2.4082	2.6213	140.97	2	0	Median	1124300000	403610000	720660000	214380000	75698000	138680000	46557000	24397000	22160000	577500000	253290000	324210000	285840000	50232000	235610000	57955	5715	54598	353089;353090;353091;353092;353093;353094;353095;353096	476635;476636;476637;476638;476639;476640;476641;476642;476643;476644;476645	476635			11	
WLPYEAGQR	0	Unmodified	1118.5509	0.55089316	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	1	2	48.995	48.063	2	0.00067613	41105	160511_QHF_FH_JSI12i_3	89.296	72.056			0.98927	1.068	13.538	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98369	1.1322	NaN	1	0	Median	0.99489	1.0074	NaN	1	0	Median	0.93879	1.0009	20.965	2	0	Median	911370000	477300000	434070000	0	0	0	51666000	26869000	24797000	309660000	169800000	139860000	550040000	280630000	269410000	57956	1085	54599	353097;353098;353099;353100;353101	476646;476647;476648	476648			3	
WLQAMFFYLK	1	Oxidation (M)	1361.6842	0.68421552	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	86.925	77.799	2	0.0024225	42959	160513_QHF_FH_JSI9Kac_6	70.919	54.202			1.134	1.3854	23.553	3	0	Plateau	1.13	0.97616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4731	1.3854	NaN	1	0	Median	1.4355	1.5278	NaN	1	0	Median	272940000	112280000	160670000	113860000	53367000	60493000	0	0	0	76282000	27025000	49257000	82802000	31885000	50916000	57957	1435	54600	353102;353103;353104	476649;476650;476651;476652;476653;476654;476655	476652		1091	7	
WLQAMFFYLK	1	Unmodified	1345.6893	0.68930089	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			93.013	85.724	2	0.0062573	49756	160513_QHF_FH_JSI10Kac_6	72.038	47.095			7.1534	7.1611	86.859	2	2	Median	4.5559	3.8747	NaN	1	1	Median	11.232	13.235	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	327770000	38380000	289390000	158060000	27496000	130560000	169710000	10883000	158830000	0	0	0	0	0	0	57958	1435	54600	353105;353106	476656;476657	476657			2	
WLQDLQEENESLK	1	Unmodified	1630.7839	0.7838658	3328	Q86UP2	KTN1	Kinectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	56.809	55.866	2	1.5887E-05	49362	160511_QHF_FH_JSI10i_2	134.75	114.99			0.78985	0.85761	53.616	8	8	Median	0.91235	0.77553	68.445	2	2	Median	0.96185	1.1727	77.988	2	2	Median	0.78985	0.79881	43.774	2	2	Median	0.78596	0.86934	72.758	2	2	Median	411690000	208320000	203370000	94119000	46266000	47853000	102610000	45185000	57426000	118560000	65018000	53540000	96400000	51851000	44550000	57959	3328	54601	353107;353108;353109;353110;353111;353112;353113;353114	476658;476659;476660;476661;476662;476663;476664;476665	476665			8	
WLQDNLTLRK	1	Unmodified	1285.7143	0.71427009	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		47.089	46.284	3	0.0023402	40685	160511_QHF_FH_JSI11i_3	57.019	49.295			1.6031	1.4193	17.139	2	2	Median	1.9406	1.6022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3243	1.2573	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	176750000	76432000	100320000	69391000	26703000	42688000	0	0	0	107360000	49729000	57634000	0	0	0	57960	3896	54602	353115;353116	476666;476667	476666			2	
WLQDVFNVPLVIQMTDDEK	1	Unmodified	2289.1351	0.13511986	1226	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	102.29	102.11	2	1.7286E-15	88105	160511_QHF_FH_JSI12i_2	153.24	127.52			0.99176	1.1261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99176	1.1261	NaN	1	1	Median	48628000	23504000	25124000	0	0	0	0	0	0	0	0	0	48628000	23504000	25124000	57961	1226	54603	353117	476668	476668			1	
WLQETSK	1	Unmodified	890.44978	0.44978213	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	16.263	15.348	2	0.020458	12359	160511_QHF_FH_JSI12i_2	60.682	28.727			0.60596	0.67997	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60596	0.67997	NaN	1	1	Median	109820000	61996000	47825000	0	0	0	0	0	0	0	0	0	109820000	61996000	47825000	57962	1743	54604	353118	476669	476669			1	
WLQETSKDSSGTK	2	Acetyl (K)	1507.7155	0.71545188	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							4				2		2	35.382	25.981	2	0.0060487	15589	160513_QHF_FH_JSI12Kac_4	68.551	52.327			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6112800	3371800	2741100	0	0	0	2639700	1593100	1046600	0	0	0	3473100	1778600	1694500	57963	1743	54605	353119;353120;353121;353122	476670;476671;476672;476673	476672	1757;1760		4	
WLQLTMFA	0	Oxidation (M)	1024.5052	0.50518852	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	1	0	By MS/MS				15	0								1		1				89.613	79.144	2	0.058915	39738	160513_QHF_FH_JSI9Kac_5	38.238	38.238			1.1832	0.99123	NaN	1	0	Median	1.1832	0.99123	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1297700	648890	648850	1297700	648890	648850	0	0	0	0	0	0	0	0	0	57964	871	54606	353123	476674	476674			1	
WLSAEIEDVKPAK	2	Unmodified	1484.7875	0.78749461	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	1	4	53.505	52.852	2;3	0.00010166	45211	160511_QHF_FH_JSI12i_3	77.912	70.873			0.84077	0.86979	27.31	7	2	Median	0.93171	0.79919	NaN	1	0	Median	0.6961	0.87034	NaN	1	0	Median	0.6834	0.6898	NaN	1	0	Median	1.0298	1.0585	28.362	4	2	Median	853730000	390940000	462800000	85930000	43651000	42279000	97843000	50825000	47019000	113460000	56284000	57171000	556500000	240180000	316330000	57965	2767	54607	353124;353125;353126;353127;353128;353129;353130	476675;476676;476677;476678;476679;476680;476681;476682;476683;476684;476685	476683			11	
WLSCETQLPVSFR	0	Unmodified	1621.7923	0.79226242	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	79.393	78.701	2	0.010495	69285	160511_QHF_FH_JSI11i_2	57.836	43.417			0.76796	0.70963	24.285	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.58854	0.72767	NaN	1	0	Median	0.65701	0.69203	NaN	1	0	Median	0.65417	0.67175	41.552	2	1	Median	127740000	69879000	57861000	0	0	0	30887000	20143000	10744000	37804000	22798000	15006000	59049000	26938000	32112000	57966	552	54608	353131;353132;353133;353134	476686;476687	476687			2	
WLSDECTNAVVNFLSR	0	Unmodified	1909.8992	0.89924668	538	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5								1	2	3	95.836	95.791	2;3	0.0002153	82912	160511_QHF_FH_JSI12i_3	60.317	50.217			0.92083	0.97885	44.422	5	4	Median	NaN	NaN	NaN	0	0	Median	0.83313	0.97885	NaN	1	1	Median	0.57968	0.53788	NaN	1	1	Median	1.4758	1.5227	28.899	3	2	Median	81947000	43248000	38699000	0	0	0	6257900	4003000	2254900	15812000	11627000	4185100	59876000	27618000	32259000	57967	538	54609	353135;353136;353137;353138;353139;353140	476688;476689;476690;476691;476692;476693;476694	476691			7	
WLSFHSGYDFGYMVK	1	Unmodified	1835.8341	0.83412723	5277	Q9UFF9	CNOT8	CCR4-NOT transcription complex subunit 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	82.771	74.654	3	0.00036142	42013	160513_QHF_FH_JSI10Kac_6	78.373	67.103			1.105	1.1242	33.822	3	1	Median	NaN	NaN	NaN	0	0	Median	0.57664	0.68317	NaN	1	1	Median	1.3223	1.3027	NaN	1	0	Median	1.105	1.1242	NaN	1	0	Median	122490000	65666000	56820000	0	0	0	78410000	50687000	27723000	24403000	7613700	16789000	19673000	7365500	12308000	57968	5277	54610	353141;353142;353143	476695;476696;476697;476698	476698			4	
WLSLPLFEAFAQHVLNR	0	Unmodified	2040.0945	0.094516093	3955	Q969Z0	TBRG4	Protein TBRG4	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	3	2	1	98.612	90.817	2;3	3.3845E-12	48977	160513_QHF_FH_JSI12Kac_6	131.56	119.93			1.0614	1.0947	10.702	7	1	Median	1.3014	1.1583	NaN	1	0	Median	0.87097	0.99573	15.632	3	0	Median	1.1588	1.0954	12.485	2	1	Median	1.0437	1.0947	NaN	1	0	Median	11998000000	5653500000	6344100000	2706200000	1193500000	1512700000	5737800000	2664800000	3073000000	2375300000	1158600000	1216700000	1178200000	636600000	541580000	57969	3955	54611	353144;353145;353146;353147;353148;353149;353150	476699;476700;476701;476702;476703	476700			5	
WLSPTQLSALCK	1	Unmodified	1402.7279	0.72787125	5252	Q9UBS8	RNF14	E3 ubiquitin-protein ligase RNF14	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	72.054	71.757	2	0.00026927	62249	160511_QHF_FH_JSI12i_3	91.855	75.223			1.1606	1.1994	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1606	1.1994	NaN	1	1	Median	24049000	9256500	14793000	0	0	0	0	0	0	0	0	0	24049000	9256500	14793000	57970	5252	54612	353151	476704	476704			1	
WLSQYID	0	Unmodified	923.43888	0.43888309	4941	Q9NR31	SAR1A	GTP-binding protein SAR1a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	65.009	64.395	2	0.010553	58510	160511_QHF_FH_JSI11i_1	74.335	56.568			1.0262	1.0416	4.2392	4	0	Median	1.2955	1.073	NaN	1	0	Median	0.82985	0.97139	NaN	1	0	Median	1.0826	1.0465	NaN	1	0	Median	0.97269	1.0368	NaN	1	0	Median	209990000	101100000	108890000	45916000	21103000	24813000	42462000	20764000	21699000	61342000	27961000	33381000	60273000	31276000	28998000	57971	4941	54613	353152;353153;353154;353155	476705;476706;476707;476708;476709;476710;476711;476712	476706			8	
WLSTRPEVASIEPLGLDEQQCSQK	1	Unmodified	2770.3596	0.3595935	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			3								1	2		76.741	76.042	3	2.3227E-07	67850	160511_QHF_FH_JSI11i_3	65.071	52.991			0.75024	0.77978	26.212	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80897	0.93857	NaN	1	0	Median	0.69578	0.64786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32490000	23153000	9336400	0	0	0	12518000	7046500	5471800	19971000	16107000	3864500	0	0	0	57972	3734	54614	353156;353157;353158	476713;476714;476715;476716	476713			4	
WLSTSIPEAQWHSSLAR	0	Unmodified	1967.9854	0.98535957	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.39		7	9						4	6	6	4	4	71.574	69.128	2;3	9.7002E-17	35629	160513_QHF_FH_JSI9Kac_6	133.86	113.12			0.94701	0.98252	15.516	19	3	Median	1.3256	1.1223	10.932	6	3	Median	0.87237	1.0142	17.011	5	0	Median	0.89102	0.85103	8.2373	4	0	Median	0.87439	0.9048	7.8237	4	0	Median	5459300000	2768100000	2691200000	1200100000	523960000	676180000	1887300000	941330000	945960000	1284300000	732170000	552100000	1087600000	570630000	516930000	57973	1650	54615	353159;353160;353161;353162;353163;353164;353165;353166;353167;353168;353169;353170;353171;353172;353173;353174;353175;353176;353177;353178	476717;476718;476719;476720;476721;476722;476723;476724;476725;476726;476727;476728;476729;476730;476731;476732;476733;476734;476735;476736;476737;476738;476739;476740;476741;476742;476743;476744;476745;476746;476747;476748;476749;476750;476751;476752;476753;476754;476755;476756;476757	476749			41	
WLSYTLGVHVNQAK	1	Unmodified	1614.8518	0.85182621	2618	Q15054	POLD3	DNA polymerase delta subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			2						3	1	2	1	1	63.676	60.041	2;3	0.00040886	32796	160513_QHF_FH_JSI10Kac_6	65.805	54.535			0.96647	1.1357	26.121	3	0	Median	0.94119	0.76588	NaN	1	0	Median	1.0115	1.194	7.0808	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	234250000	112080000	122170000	62824000	36606000	26219000	171430000	75476000	95955000	0	0	0	0	0	0	57974	2618	54616	353179;353180;353181;353182;353183	476758;476759;476760;476761;476762;476763	476763			5	
WLTIQSGEQPYK	1	Unmodified	1448.73	0.72997974	392	O43920	NDUFS5	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	55.996	55.032	2	2.6616E-05	47715	160511_QHF_FH_JSI11i_2	136.52	136.52			0.8956	0.85824	21.276	5	2	Median	1.028	0.88329	18.418	2	2	Median	0.69476	0.85824	NaN	1	0	Median	0.66919	0.67163	NaN	1	0	Median	1.0292	1.1541	NaN	1	0	Median	438310000	212260000	226050000	159980000	72091000	87886000	86951000	48015000	38936000	121830000	58469000	63357000	69559000	33686000	35873000	57975	392	54617	353184;353185;353186;353187;353188	476764;476765;476766;476767;476768;476769;476770;476771;476772	476769			9	
WLTYFMAVK	1	Unmodified	1157.5943	0.59433788	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	84.199	74.819	2	0.0088664	39894	160513_QHF_FH_JSI12Kac_6	71.501	48.182			2.3906	2.4191	42.734	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4374	3.2726	NaN	1	1	Median	1.6625	1.7882	NaN	1	1	Median	387080000	164500000	222580000	0	0	0	0	0	0	237710000	84083000	153620000	149370000	80416000	68956000	57976	3221	54618	353189;353190	476773;476774	476774			2	
WLVIDPVPAAVPTQVAGPK	1	Unmodified	1957.1037	0.1036838	3094	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		100.57	100.43	3	0.00050605	88118	160511_QHF_FH_JSI11i_2	57.788	48.625			1.3882	1.3378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3882	1.3378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17316000	7007800	10308000	0	0	0	0	0	0	17316000	7007800	10308000	0	0	0	57977	3094	54619	353191	476775	476775			1	
WLVIDRK	1	Unmodified	928.54944	0.54943659	415	O60427	FADS1	Fatty acid desaturase 1	no	no	0	0	0	1		By MS/MS			3	0			1								1			39.987	38.496	3	0.058534	32134	160511_QHF_FH_JSI10i_3	22.74	12.326			2.0341	2.3943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0341	2.3943	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16325000	6407600	9917100	0	0	0	16325000	6407600	9917100	0	0	0	0	0	0	57978	415	54620	353192	476776	476776			1	
WLVQVPR	0	Unmodified	896.52322	0.52322184	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			3							1	2			45.537	44.182	2;3	0.014002	48161	160511_QHF_FH_JSI9i_3	58.246	24.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57979	2168	54621	353193;353194;353195	476777;476778;476779	476779			3	
WLWMLGAHR	0	Unmodified	1168.5964	0.59640356	5023	Q9NV66	TYW1	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	1	2	1		77.629	70.195	3	0.00018172	38849	160513_QHF_FH_JSI10Kac_6	74.301	53.431			1.3877	1.3769	43.581	2	0	Median	1.1755	1.0117	NaN	1	0	Median	1.6381	1.8738	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	110660000	42465000	68198000	27371000	11064000	16307000	83292000	31400000	51891000	0	0	0	0	0	0	57980	5023	54622	353196;353197;353198;353199	476780;476781;476782;476783;476784	476784			5	
WLWMLGAHR	0	Oxidation (M)	1184.5913	0.59131818	5023	Q9NV66	TYW1	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	yes	yes	0	0	1	0		By MS/MS			16	0									1		1			68.871	61.195	3	0.03149	33653	160513_QHF_FH_JSI10Kac_6	34.387	27.34			0.3508	0.41531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.3508	0.41531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34136000	24975000	9160500	0	0	0	34136000	24975000	9160500	0	0	0	0	0	0	57981	5023	54622	353200	476785	476785			1	
WLYHLAK	1	Unmodified	929.51232	0.51232281	4997	Q9NU22	MDN1	Midasin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	39.308	39.112	3	0.017926	33354	160511_QHF_FH_JSI12i_3	36.185	19.221			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57982	4997	54623	353201	476786	476786			1	
WLYHLYIK	1	Unmodified	1134.6226	0.62260154	2280	Q08AM6	VAC14	Protein VAC14 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	1	1	2	71.76	62.863	2;3	0.0062664	33279	160513_QHF_FH_JSI9Kac_6	41.429	37.729			1.0202	1.0081	10.62	6	3	Median	1.1795	1.0081	0.21662	2	0	Median	0.93403	1.1166	NaN	1	1	Median	1.0665	1.0043	NaN	1	1	Median	0.86914	0.91691	17.122	2	1	Median	1067500000	524460000	543000000	168900000	73878000	95022000	424490000	210920000	213580000	213270000	108500000	104770000	260800000	131170000	129630000	57983	2280	54624	353202;353203;353204;353205;353206;353207	476787;476788;476789;476790;476791	476788			5	
WLYLPDFFR	0	Unmodified	1255.639	0.63897988	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			95.506	88.113	2	0.020977	51632	160513_QHF_FH_JSI10Kac_6	47.823	34.315			0.79791	0.80888	6.1951	2	0	Median	0.98406	0.84511	NaN	1	0	Median	0.64697	0.77422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	150050000	81909000	68142000	53407000	26830000	26578000	96643000	55079000	41564000	0	0	0	0	0	0	57984	3832	54625	353208;353209	476792;476793;476794	476794			3	
WLYVAMLR	0	Unmodified	1050.5685	0.56845748	5353	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	81.906	73.66	2	0.0015258	41423	160513_QHF_FH_JSI10Kac_6	98.415	64.412			0.75156	1.0002	22.387	4	0	Linear	0.95747	0.82393	NaN	1	0	Median	0.75422	0.90308	NaN	1	0	Median	1.172	1.1077	NaN	1	0	Median	1.267	1.3617	NaN	1	0	Median	283040000	129030000	154000000	52801000	28761000	24039000	154580000	71556000	83027000	52409000	20375000	32034000	23245000	8341400	14903000	57985	5353	54626	353210;353211;353212;353213	476795;476796;476797;476798;476799	476799			5	
WMALESILHR	0	Unmodified	1254.6543	0.65431237	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.25	5.63			3						1	1	2	1		80.259	78.184	3	3.2048E-05	69973	160511_QHF_FH_JSI11i_3	83.869	72.336			0.69452	0.70814	14.714	4	0	Median	0.77661	0.6551	NaN	1	0	Median	0.58825	0.70814	6.291	2	0	Median	0.99112	0.90892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	77015000	37802000	39213000	10739000	5598400	5140400	37949000	22572000	15377000	28327000	9631900	18696000	0	0	0	57986	774	54627	353214;353215;353216;353217	476800;476801;476802;476803;476804;476805	476800			6	
WMDEAQALDTADR	0	Unmodified	1520.6566	0.6565568	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	51.706	51.169	2	0.00074259	46146	160511_QHF_FH_JSI10i_1	81.525	78.023			2.0273	2.2071	5.5605	2	2	Median	NaN	NaN	NaN	0	0	Median	1.9707	2.2956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.0854	2.122	NaN	1	1	Median	373180000	121830000	251350000	0	0	0	196720000	73947000	122770000	0	0	0	176460000	47884000	128580000	57987	4518	54628	353218;353219	476806;476807	476807			2	
WMDEAQALDTADRFINSK	1	Unmodified	2109.979	0.97895357	4518	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	88.093	88.038	3	1.9636E-05	76394	160511_QHF_FH_JSI12i_3	83.253	79.649			1.3752	1.3336	8.3683	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5254	1.4149	NaN	1	0	Median	1.2399	1.257	NaN	1	0	Median	309770000	131740000	178030000	0	0	0	0	0	0	99278000	35560000	63719000	210500000	96184000	114310000	57988	4518	54629	353220;353221	476808;476809;476810	476809			3	
WMDWNAPQVQYR	0	Unmodified	1592.7194	0.71943182	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.18	0.386		9	2							2	2	3	4	71.305	70.663	2	0.00010718	61284	160511_QHF_FH_JSI12i_2	84.213	69.522			1.3188	1.2783	22.068	6	1	Median	1.3702	1.1775	NaN	1	0	Median	0.84327	1.0092	NaN	1	0	Median	1.4109	1.3801	8.5666	2	0	Median	1.4518	1.5588	30.332	2	1	Median	332360000	144940000	187420000	41389000	15860000	25530000	64631000	37223000	27408000	138790000	63071000	75715000	87554000	28784000	58771000	57989	1388	54630	353222;353223;353224;353225;353226;353227;353228;353229;353230;353231;353232	476811;476812;476813;476814;476815;476816;476817;476818;476819;476820;476821;476822;476823;476824;476825	476815			15	
WMEANQHSLNILGQK	1	Unmodified	1767.8726	0.872638	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	58.857	58.726	3	3.8637E-05	52199	160511_QHF_FH_JSI11i_3	92.935	84.142			1.055	1.0267	0.43861	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0939	1.0235	NaN	1	0	Median	1.0175	1.0299	NaN	1	0	Median	330830000	179010000	151830000	0	0	0	0	0	0	133930000	71282000	62649000	196900000	107730000	89178000	57990	2140	54631	353233;353234	476826;476827	476826			2	
WMEEQAQSLIDK	1	Oxidation (M)	1492.6868	0.68679429	925	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	yes	yes	0	0	1	0			By MS/MS		1	0	2											2		52.171	51.759	2	0.0019906	47027	160511_QHF_FH_JSI11i_1	63.624	53.253			0.6821	0.66038	25.494	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6821	0.66038	25.494	2	1	Median	NaN	NaN	NaN	0	0	Median	53966000	35081000	18885000	0	0	0	0	0	0	53966000	35081000	18885000	0	0	0	57991	925	54632	353235;353236	476828;476829	476828		502	2	
WMEEQAQSLIDK	1	Unmodified	1476.6919	0.69187967	925	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	2	3	2	60.674	59.932	2	9.9238E-11	51113	160511_QHF_FH_JSI12i_2	145.25	134.72			1.0474	1.1078	26.92	9	5	Median	1.16	0.96281	13.928	2	1	Median	0.78675	0.93911	38.217	2	2	Median	1.2373	1.2762	41.878	3	2	Median	1.051	1.146	4.7928	2	0	Median	2773700000	1427600000	1346000000	381760000	193750000	188020000	583020000	328900000	254120000	1097400000	606150000	491280000	711440000	298850000	412590000	57992	925	54632	353237;353238;353239;353240;353241;353242;353243;353244;353245	476830;476831;476832;476833;476834;476835;476836;476837;476838;476839;476840;476841;476842	476832			13	
WMEVVVITHK	1	Unmodified	1240.6638	0.66381443	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			65.114	56.58	3	0.0004982	31049	160513_QHF_FH_JSI10Kac_6	72.2	24.913			0.87006	0.86499	7.5746	2	0	Median	1.068	0.91258	NaN	1	0	Median	0.70879	0.81988	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81008000	42975000	38033000	25074000	10101000	14973000	55934000	32874000	23060000	0	0	0	0	0	0	57993	5618	54633	353246;353247	476843;476844;476845	476844			3	
WMGIAFR	0	Unmodified	879.44253	0.44252868	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.462	64.971	2	0.049359	54553	160511_QHF_FH_JSI10i_3	43	33.251			0.91584	0.88921	9.0355	2	0	Median	1.0115	0.83417	NaN	1	0	Median	0.82925	0.94787	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	89235000	42516000	46719000	41529000	19141000	22388000	47706000	23375000	24331000	0	0	0	0	0	0	57994	4442	54634	353248;353249	476846;476847	476846			2	
WMGPIPPAVNAR	0	Unmodified	1307.6809	0.68086147	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	64.119	63.522	2	0.034619	54735	160511_QHF_FH_JSI12i_3	46.891	34.844			1.0235	0.97138	7.6437	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.96592	1.1279	NaN	1	0	Median	1.0235	0.97138	NaN	1	0	Median	1.0704	1.0765	NaN	1	1	Median	269830000	129130000	140700000	0	0	0	45008000	23724000	21284000	130420000	67202000	63215000	94407000	38204000	56203000	57995	5526	54635	353250;353251;353252	476848;476849;476850;476851;476852;476853;476854;476855	476854			8	
WMIPSEAK	1	Unmodified	960.47389	0.47388839	1698	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	48.055	47.294	2	0.025539	40591	160511_QHF_FH_JSI12i_2	52.716	29.193			0.83649	0.88329	19.541	5	1	Median	1.1759	1.0001	NaN	1	0	Median	0.51408	0.60355	NaN	1	0	Median	0.83125	0.83076	8.6703	2	0	Median	0.83649	0.91351	NaN	1	1	Median	917600000	485140000	432460000	168140000	78504000	89636000	52282000	31928000	20354000	453400000	239100000	214300000	243780000	135610000	108170000	57996	1698	54636	353253;353254;353255;353256;353257	476856;476857	476856			2	
WMIQYNNLNLK	1	Oxidation (M)	1451.7231	0.72312022	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.38	6.63		1	3						4	1	2	3	2	74.135	69.065	2	2.4024E-11	36824	160513_QHF_FH_JSI11Kac_6	140.5	123.48			1.0245	0.98135	21.236	7	1	Median	1.2556	1.088	NaN	1	0	Median	0.69344	0.79284	23.73	2	1	Median	0.8943	0.83117	23.489	2	0	Median	1.0509	1.0977	6.153	2	0	Median	435530000	215600000	219930000	63882000	28064000	35818000	84065000	49679000	34387000	145170000	76775000	68397000	142410000	61086000	81328000	57997	1004	54637	353258;353259;353260;353261;353262;353263;353264;353265	476858;476859;476860;476861;476862;476863;476864;476865;476866;476867;476868;476869	476861		590	12	
WMIQYNNLNLK	1	Unmodified	1435.7282	0.7282056	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	4	3	3	3	79.031	75.749	2	5.9583E-20	39018	160513_QHF_FH_JSI11Kac_6	168.23	146.49			1.1198	1.0755	16.514	12	5	Median	1.2716	1.075	19.971	3	1	Median	0.89828	1.076	23.965	3	1	Median	1.1213	1.1215	5.8387	3	2	Median	1.0103	1.0478	19.672	3	1	Median	4118900000	1961800000	2157100000	761040000	350810000	410230000	959620000	532640000	426980000	1272000000	613500000	658450000	1126300000	464810000	661460000	57998	1004	54637	353266;353267;353268;353269;353270;353271;353272;353273;353274;353275;353276;353277;353278	476870;476871;476872;476873;476874;476875;476876;476877;476878;476879;476880;476881;476882;476883;476884;476885;476886;476887;476888;476889;476890;476891	476877			22	
WMPGITQWK	1	Unmodified	1145.5692	0.56918576	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	74.033	73.236	2	2.1385E-05	61392	160511_QHF_FH_JSI10i_3	106.36	88.971			0.77412	0.75835	8.0253	4	1	Median	1.0606	0.85127	NaN	1	0	Median	0.63349	0.72566	NaN	1	0	Median	0.85205	0.79252	NaN	1	0	Median	0.70332	0.71792	NaN	1	1	Median	3096000000	1589300000	1506800000	635040000	329420000	305620000	599580000	356660000	242930000	708150000	356260000	351890000	1153300000	546930000	606320000	57999	2282	54638	353279;353280;353281;353282	476892;476893;476894;476895;476896;476897;476898	476895			7	
WMPGITQWK	1	Oxidation (M)	1161.5641	0.56410038	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	1	0	By MS/MS				3	0			1							1				61.656	60.141	2	0.026636	49364	160511_QHF_FH_JSI9i_3	42.864	23.078			1.342	1.0668	NaN	1	0	Median	1.342	1.0668	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50321000	17933000	32388000	50321000	17933000	32388000	0	0	0	0	0	0	0	0	0	58000	2282	54638	353283	476899	476899			1	
WMQSELNVEEVVNDR	0	Unmodified	1846.852	0.85196214	2842	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		75.335	74.584	2	9.1862E-06	66413	160511_QHF_FH_JSI10i_2	126.1	88.676			1.2935	1.6102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2935	1.6102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30249000	14277000	15972000	0	0	0	30249000	14277000	15972000	0	0	0	0	0	0	58001	2842	54639	353284;353285;353286	476900;476901;476902;476903	476903			4	
WMQVASLNEK	1	Unmodified	1204.591	0.59104341	5221	Q9P2N7	KLHL13	Kelch-like protein 13	no	no	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		48.769	47.714	2	0.0063505	41234	160511_QHF_FH_JSI11i_2	54.608	42.76			0.5504	0.46903	NaN	1	1	Median	0.5504	0.46903	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23490000	13780000	9709300	23490000	13780000	9709300	0	0	0	0	0	0	0	0	0	58002	5221	54640	353287;353288;353289	476904;476905;476906	476906			3	
WMSETGIIDVFLLLGPSISDVFR	0	Unmodified	2594.3454	0.34544698	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0		By MS/MS	By MS/MS		13.5	2.5				2					2		2	2		104.32	96.289	2;3	6.6254E-87	58250	160513_QHF_FH_JSI10Kac_6	217.11	193.97			0.95146	1.1203	13.833	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.95146	1.1203	NaN	1	0	Median	0.94943	0.91938	11.052	2	1	Median	NaN	NaN	NaN	0	0	Median	143680000	92816000	50862000	0	0	0	132020000	86561000	45460000	11657000	6254800	5402200	0	0	0	58003	2569	54641	353290;353291;353292;353293	476907;476908;476909;476910	476910			4	
WNDGLDQYR	0	Unmodified	1165.5152	0.51523593	678	O95340	PAPSS2	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	41.2	40.265	2	0.00092741	34536	160511_QHF_FH_JSI11i_2	71.491	63.559			0.83625	1.0043	5.7498	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.75289	0.9352	NaN	1	0	Median	1.0054	1.0043	NaN	1	0	Median	0.83625	0.89623	NaN	1	0	Median	172120000	89278000	82844000	0	0	0	48549000	26550000	21999000	83187000	40380000	42807000	40385000	22348000	18037000	58004	678	54642	353294;353295;353296	476911;476912;476913	476912			3	
WNDVAGLEGAK	1	Unmodified	1158.5669	0.56693715	5432	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	44.007	43.182	2	0.0073282	39125	160511_QHF_FH_JSI11i_1	51.092	38.56			1.8656	1.8336	42.092	4	0	Median	1.7087	1.4295	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.2544	2.2177	61.116	2	0	Median	2.0368	2.3355	NaN	1	0	Median	202140000	70719000	131420000	35390000	14760000	20630000	0	0	0	131170000	43141000	88024000	35585000	12818000	22767000	58005	5432	54643	353297;353298;353299;353300	476914;476915;476916	476914			3	
WNENVQYLSEDR	0	Unmodified	1551.6954	0.69538514	394	O43929	ORC4	Origin recognition complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	50.348	49.821	2	0.00019599	43015	160511_QHF_FH_JSI11i_2	80.763	65.134			0.9963	0.99596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9963	0.99596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	32194000	12809000	19385000	0	0	0	0	0	0	32194000	12809000	19385000	0	0	0	58006	394	54644	353301;353302;353303;353304	476917;476918;476919;476920	476918			4	
WNFDDLLEK	1	Unmodified	1178.5608	0.56078914	5505	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		91.912	91.425	2	0.0057937	80397	160511_QHF_FH_JSI11i_2	56.563	39.467			0.91505	0.9351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91505	0.9351	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75780000	37669000	38111000	0	0	0	0	0	0	75780000	37669000	38111000	0	0	0	58007	5505	54645	353305;353306	476921;476922	476922			2	
WNFIYVFHTLGQYFQK	1	Unmodified	2090.0414	0.04141789	2583	Q14956	GPNMB	Transmembrane glycoprotein NMB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	97.872	89.452	3	2.4885E-24	53501	160513_QHF_FH_JSI10Kac_6	156.17	116.32			0.71672	0.79524	15.78	4	0	Median	1.0364	0.86783	NaN	1	0	Median	0.65481	0.77499	NaN	1	0	Median	0.64261	0.60548	NaN	1	0	Median	0.78449	0.81603	NaN	1	0	Median	715280000	363520000	351760000	200020000	72730000	127290000	250640000	127260000	123370000	151610000	94236000	57373000	113010000	69284000	43724000	58008	2583	54646	353307;353308;353309;353310	476923;476924;476925;476926	476926			4	
WNGILGLAYATLAK	1	Unmodified	1489.8293	0.82929985	5691	Q9Y5Z0	BACE2	Beta-secretase 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				94.721	85.708	2	0.0043315	48520	160513_QHF_FH_JSI9Kac_6	72.265	47.883			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58009	5691	54647	353311	476927	476927			1	
WNIKPESK	2	Unmodified	1000.5342	0.53418046	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	22.255	22.246	3	0.005903	18241	160511_QHF_FH_JSI12i_3	48.794	27.266			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58010	5393	54648	353312	476928	476928			1	
WNLDELPK	1	Unmodified	1013.5182	0.51819605	1128	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.667	4	4	1							3	2	2	2	65.627	64.87	2	0.0034465	58894	160511_QHF_FH_JSI11i_1	72.485	61.611			0.96751	1.0446	16.783	8	0	Median	1.1841	1.004	28.26	2	0	Median	0.89085	1.0526	14.905	2	0	Median	1.057	1.0388	17.034	2	0	Median	0.90261	0.97114	24.128	2	0	Median	1314100000	642650000	671400000	173330000	72615000	100720000	343220000	168890000	174330000	436660000	224230000	212430000	360850000	176920000	183930000	58011	1128	54649	353313;353314;353315;353316;353317;353318;353319;353320;353321	476929;476930;476931;476932;476933;476934;476935;476936;476937;476938;476939;476940	476929			12	
WNPEALPSNTGEVNFQSGIIAAR	0	Unmodified	2470.2241	0.2240863	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		88.174	87.91	3	4.3818E-05	78525	160511_QHF_FH_JSI11i_3	52.061	40.105			0.69549	0.74677	34.088	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7655	0.95032	NaN	1	1	Median	0.63188	0.58682	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38159000	22578000	15581000	0	0	0	21852000	11332000	10520000	16307000	11247000	5060600	0	0	0	58012	1435	54650	353322;353323	476941;476942	476941			2	
WNPTQNVR	0	Unmodified	1013.5043	0.50427732	3204	Q712K3	UBE2R2	Ubiquitin-conjugating enzyme E2 R2	no	no	0	0	0	0	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		28.026	27.128	2	0.0088887	22575	160511_QHF_FH_JSI10i_3	56.547	40.344			0.98093	1.0208	13.226	3	1	Plateau	0.98093	0.80721	NaN	1	0	Median	0.83914	1.0208	NaN	1	0	Median	1.0842	1.0088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	221540000	105830000	115710000	42268000	18615000	23653000	81293000	43191000	38102000	97977000	44022000	53955000	0	0	0	58013	3204	54651	353324;353325;353326	476943;476944	476944			2	
WNQDTMEQK	1	Unmodified	1178.5026	0.50262234	2689	Q15637	SF1	Splicing factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.14	0.35	6	1								2	2	2	1	21.447	20.881	2	4.9713E-06	18245	160511_QHF_FH_JSI12i_1	117.4	93.426			0.88043	0.88805	44.208	6	4	Median	1.5847	1.3193	74.921	2	2	Median	0.82783	0.96359	NaN	1	0	Median	1.0146	0.99088	48.523	2	2	Median	0.77431	0.81844	NaN	1	0	Median	812950000	403410000	409550000	184770000	70545000	114220000	138380000	78032000	60349000	284730000	153680000	131050000	205080000	101150000	103930000	58014	2689	54652	353327;353328;353329;353330;353331;353332;353333	476945;476946;476947;476948;476949;476950;476951;476952;476953	476948			9	
WNQLQAFWGTGK	1	Unmodified	1434.7044	0.70443369	3258	Q7Z3B4	NUP54	Nucleoporin p54	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							2	5	2	1	77.962	77.156	2	4.7652E-05	66896	160511_QHF_FH_JSI12i_3	99.568	85.45			0.95794	1.0612	14.298	9	6	Median	1.4757	1.2451	19.591	2	2	Median	0.82135	0.98946	9.11	4	4	Median	1.0151	0.9883	10.065	2	0	Median	1.0839	1.0947	NaN	1	0	Median	426400000	226390000	200010000	47549000	20664000	26885000	103620000	53512000	50112000	103700000	51598000	52098000	171530000	100620000	70917000	58015	3258	54653	353334;353335;353336;353337;353338;353339;353340;353341;353342;353343	476954;476955;476956;476957;476958;476959;476960;476961;476962;476963;476964;476965;476966;476967;476968;476969	476968			16	
WNQQQLDDLYLIAICHR	0	Unmodified	2185.0739	0.073857005	4003	Q96C86	DCPS	m7GpppX diphosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	89.252	81.34	3	2.024E-10	43406	160513_QHF_FH_JSI12Kac_6	99.392	86.355			1.0132	0.94719	80.282	3	0	Median	3.8446	3.2332	NaN	1	0	Median	0.60005	0.71422	NaN	1	0	Median	1.0132	0.94719	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	369890000	209150000	160740000	58851000	13414000	45437000	121580000	87687000	33892000	189460000	108040000	81413000	0	0	0	58016	4003	54654	353344;353345;353346;353347	476970;476971;476972;476973	476972			4	
WNSFTILLIHSGGYSQR	0	Unmodified	1978.0061	0.006095016	201	O14772	FPGT	Fucose-1-phosphate guanylyltransferase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			82.353	76.76	3	0.00022297	42475	160513_QHF_FH_JSI10Kac_6	69.081	62.191			0.58195	0.68687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.58195	0.68687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67412000	44316000	23096000	0	0	0	67412000	44316000	23096000	0	0	0	0	0	0	58017	201	54655	353348	476974	476974			1	
WNSPAEEGSSDCEVFSK	1	Unmodified	1927.7894	0.78942146	1417	P34932	HSPA4	Heat shock 70 kDa protein 4	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.188	50.522	2	2.8298E-10	45922	160511_QHF_FH_JSI12i_1	153.39	143.88			0.67563	0.71066	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67563	0.71066	NaN	1	1	Median	90743000	46124000	44619000	0	0	0	0	0	0	0	0	0	90743000	46124000	44619000	58018	1417	54656	353349	476975	476975			1	
WNSVFDQLTQVVK	1	Unmodified	1562.8093	0.80929269	1575	P45985	MAP2K4	Dual specificity mitogen-activated protein kinase kinase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	2	1	97.978	97.859	2	9.9456E-05	84410	160511_QHF_FH_JSI12i_3	93.821	84.866			1.1507	1.1214	36.002	5	2	Median	NaN	NaN	NaN	0	0	Median	1.1992	1.4446	36.97	2	0	Median	1.0641	1.0259	12.582	2	2	Median	1.9045	2.1264	NaN	1	0	Median	140860000	52866000	87998000	0	0	0	20706000	7777300	12929000	48811000	20860000	27951000	71348000	24229000	47118000	58019	1575	54657	353350;353351;353352;353353;353354;353355	476976;476977;476978;476979;476980;476981;476982;476983	476982			8	
WNSVFPK	1	Unmodified	876.44939	0.4493882	4936	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	45.228	44.987	2	0.022676	38375	160511_QHF_FH_JSI12i_3	59.205	38.923			0.97608	0.9751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97608	0.9751	NaN	1	1	Median	158020000	95785000	62235000	0	0	0	0	0	0	0	0	0	158020000	95785000	62235000	58020	4936	54658	353356	476984	476984			1	
WNSVSPASAGK	1	Unmodified	1102.5407	0.5407224	3323	Q86UE4	MTDH	Protein LYRIC	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	3.93	2	4	3					1		2	3	3	2	25.084	23.615	2	8.8921E-05	19522	160511_QHF_FH_JSI12i_3	89.047	68.492			1.0293	1.1035	38.5	10	2	Median	1.1106	0.95836	15.556	2	0	Median	0.88766	1.0657	56.611	3	1	Plateau	0.94452	0.96668	35.128	3	1	Median	1.1272	1.1936	6.7257	2	0	Median	1140300000	533500000	606770000	107330000	43574000	63760000	251510000	133460000	118050000	421750000	200000000	221750000	359670000	156470000	203200000	58021	3323	54659	353357;353358;353359;353360;353361;353362;353363;353364;353365;353366	476985;476986;476987;476988;476989;476990;476991;476992;476993;476994;476995;476996	476996			11	
WNTALIGLMTYFR	0	Unmodified	1584.8123	0.81226958	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	96.689	88.28	2;3	4.645E-17	49935	160513_QHF_FH_JSI9Kac_6	135.58	118.37			1.0047	0.99525	8.8521	8	0	Median	1.1609	0.9794	4.6394	2	0	Median	0.78807	0.92579	7.8625	2	0	Median	1.14	1.0735	14.619	2	0	Median	0.97815	1.0343	0.96361	2	0	Median	4980700000	2506100000	2474600000	1198100000	553360000	644700000	1553200000	860500000	692670000	1319000000	615210000	703810000	910460000	477070000	433400000	58022	3101	54660	353367;353368;353369;353370;353371;353372;353373;353374	476997;476998;476999;477000;477001;477002;477003;477004;477005;477006;477007;477008;477009	477001			13	
WNTALIGLMTYFR	0	Oxidation (M)	1600.8072	0.8071842	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0		By MS/MS			16	0									2		2			88.969	83.249	2	0.0036922	47168	160513_QHF_FH_JSI10Kac_6	60.509	51.996			0.75168	0.89194	14.985	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75168	0.89194	14.985	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	206870000	122810000	84055000	0	0	0	206870000	122810000	84055000	0	0	0	0	0	0	58023	3101	54660	353375;353376	477010;477011	477011		2198	2	
WNTDNTLGTEIAIEDQICQGLK	1	Unmodified	2518.201	0.20096759	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									1	2	3	101	100.87	3	5.0524E-29	91567	160511_QHF_FH_JSI11i_1	173.56	170.59			0.95584	1.0934	24.627	6	2	Median	NaN	NaN	NaN	0	0	Median	0.8822	1.0274	NaN	1	0	Median	0.76994	0.77637	6.6068	2	0	Median	1.2615	1.3455	7.5567	3	2	Plateau	1053500000	539480000	513980000	0	0	0	241660000	120010000	121640000	299460000	173480000	125970000	512350000	245990000	266360000	58024	1570	54661	353377;353378;353379;353380;353381;353382	477012;477013;477014;477015;477016;477017;477018;477019	477012			8	
WNTDNTLGTEISWENK	1	Unmodified	1906.8697	0.86972069	5499	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								1	3	2	2	72.848	72.204	2	1.0299E-11	65761	160511_QHF_FH_JSI11i_1	113.65	92.696			0.99602	1.0876	21.093	7	3	Median	1.1548	0.98729	NaN	1	0	Median	0.927	1.1333	33.314	3	2	Median	1.0793	1.0876	NaN	1	0	Median	0.89322	0.98373	18.913	2	1	Median	339480000	170710000	168770000	41195000	19612000	21583000	118160000	57437000	60720000	71776000	37400000	34376000	108350000	56260000	52088000	58025	5499	54662	353383;353384;353385;353386;353387;353388;353389;353390	477020;477021;477022;477023;477024;477025;477026;477027;477028;477029;477030;477031;477032	477020			13	
WNTDNTLGTEITVEDQLAR	0	Unmodified	2175.0444	0.044390595	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.31	0.464	11	5								4	3	4	5	80.896	80.336	2;3	3.3886E-32	72892	160511_QHF_FH_JSI10i_1	233.4	210.87			0.93994	0.96466	12.639	16	6	Median	1.1872	0.98921	8.5918	4	0	Median	0.77176	0.91654	6.9932	3	0	Plateau	0.96962	0.95954	9.4589	4	2	Median	0.93324	0.97689	19.141	5	4	Median	2118500000	1092500000	1026000000	219670000	96031000	123640000	649440000	364870000	284580000	499910000	229080000	270820000	749490000	402520000	346970000	58026	1195	54663	353391;353392;353393;353394;353395;353396;353397;353398;353399;353400;353401;353402;353403;353404;353405;353406	477033;477034;477035;477036;477037;477038;477039;477040;477041;477042;477043;477044;477045;477046;477047;477048;477049;477050;477051;477052;477053;477054	477046			22	
WNTDNTLGTEITVEDQLARGLK	1	Unmodified	2473.2449	0.24488132	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	89.883	89.795	3	4.3049E-07	77930	160511_QHF_FH_JSI12i_3	96.544	83.507			0.33193	0.3369	43.6	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33193	0.3369	43.6	2	2	Median	109710000	77942000	31765000	0	0	0	0	0	0	0	0	0	109710000	77942000	31765000	58027	1195	54664	353407;353408	477055;477056;477057	477056			3	
WNTTLYEGTWR	0	Unmodified	1425.6677	0.66771383	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	65.831	65.087	2	0.0021021	57646	160511_QHF_FH_JSI11i_3	58.699	51.571			0.86753	0.90081	29.756	2	1	Median	NaN	NaN	NaN	0	0	Median	0.96415	1.1118	NaN	1	1	Median	0.7806	0.72989	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	183820000	110270000	73551000	0	0	0	36932000	11632000	25299000	146890000	98637000	48251000	0	0	0	58028	871	54665	353409;353410;353411	477058;477059;477060;477061	477058			4	
WNVDSVHAK	1	Unmodified	1054.5196	0.51959303	5028	Q9NVD7	PARVA	Alpha-parvin	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	25.274	25.242	2	0.036438	20991	160511_QHF_FH_JSI12i_3	38.776	32.04			0.97127	1.0077	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97127	1.0077	NaN	1	0	Median	39927000	20065000	19861000	0	0	0	0	0	0	0	0	0	39927000	20065000	19861000	58029	5028	54666	353412	477062	477062			1	
WNVEMESSR	0	Unmodified	1136.4921	0.49205765	4246	Q96ST2	IWS1	Protein IWS1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	37.318	36.369	2	0.0037462	30794	160511_QHF_FH_JSI12i_2	58.981	50.118			1.1034	1.1438	7.5021	4	0	Median	1.4551	1.2858	NaN	1	0	Median	0.87912	1.0744	NaN	1	0	Median	1.1457	1.1401	NaN	1	0	Median	1.0626	1.1475	NaN	1	0	Median	168740000	81941000	86800000	36701000	16842000	19860000	35119000	19605000	15514000	54021000	25887000	28134000	42899000	19607000	23293000	58030	4246	54667	353413;353414;353415;353416	477063;477064;477065;477066;477067;477068;477069	477063			7	
WNVLGLQGALLTHFLQPIYLK	1	Unmodified	2423.3729	0.37292278	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	3.74			2						20	6	7	6	3	99.289	91.882	2;3;4	1.0917E-209	54205	160513_QHF_FH_JSI10Kac_6	301.94	273.4			1.0498	1.0296	36.557	21	13	Median	1.1096	0.93056	51.655	5	3	Median	0.81082	0.9711	49.953	7	5	Median	1.0982	1.0732	8.1448	6	3	Median	1.0241	1.0552	8.7555	3	2	Median	41592000000	21641000000	19951000000	6429400000	3647300000	2782100000	17350000000	9342000000	8007500000	11414000000	5455400000	5958100000	6399800000	3196400000	3203500000	58031	1857	54668	353417;353418;353419;353420;353421;353422;353423;353424;353425;353426;353427;353428;353429;353430;353431;353432;353433;353434;353435;353436;353437;353438	477070;477071;477072;477073;477074;477075;477076;477077;477078;477079;477080;477081;477082;477083;477084;477085;477086;477087;477088;477089;477090;477091;477092;477093;477094;477095;477096	477089			27	
WNYALLVPMLGLAAFR	0	Oxidation (M)	1849.9913	0.99129657	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	97.494	88.991	2	0.00071535	50381	160513_QHF_FH_JSI11Kac_6	73.848	32.795			0.83447	0.848	17.641	4	2	Median	NaN	NaN	NaN	0	0	Median	0.89438	1.0468	NaN	1	0	Median	0.77857	0.73592	NaN	1	0	Median	0.80522	0.848	17.346	2	2	Median	307390000	159440000	147960000	0	0	0	104870000	44958000	59917000	64219000	39735000	24483000	138300000	74744000	63556000	58032	3990	54669	353439;353440;353441;353442;353443	477097;477098;477099;477100;477101	477097		2371	5	
WNYALLVPMLGLAAFR	0	Unmodified	1833.9964	0.99638195	3990	Q96BQ5	CCDC127	Coiled-coil domain-containing protein 127	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	3	2	2	99.472	91.339	2;3	4.3797E-08	55127	160513_QHF_FH_JSI10Kac_6	112.72	100.95			0.91358	0.91352	27.961	9	4	Median	1.0068	0.85256	13.29	2	1	Median	0.76308	0.91196	4.3171	3	1	Median	1.0843	1.034	5.8361	2	0	Median	0.74875	0.78274	72.057	2	2	Median	2692300000	1424700000	1267600000	639700000	289570000	350130000	930860000	561770000	369100000	962120000	467330000	494790000	159660000	106040000	53619000	58033	3990	54669	353444;353445;353446;353447;353448;353449;353450;353451;353452	477102;477103;477104;477105;477106;477107;477108;477109;477110	477109			9	
WPDFNQEAYVGGTMVR	0	Unmodified	1868.8516	0.85156821	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	80.688	79.536	2	0.0069932	70210	160511_QHF_FH_JSI9i_2	49.929	34.39			1.4956	1.6182	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4956	1.6182	NaN	1	0	Median	14469000	6651500	7817100	0	0	0	0	0	0	0	0	0	14469000	6651500	7817100	58034	2294	54670	353453;353454	477111;477112	477112			2	
WPDLLTEMVNR	0	Unmodified	1372.6809	0.68092105	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.487		8	5							1	3	4	5	93.363	93.076	2	0.0021126	81994	160511_QHF_FH_JSI11i_2	63.283	51.436			1.0331	0.99223	29.712	10	10	Median	1.1617	1.0036	NaN	1	1	Median	0.90347	1.0956	65.798	2	2	Median	1.4054	1.4186	32.252	3	3	Plateau	0.867	0.89984	19.082	4	4	Median	504580000	223510000	281080000	41589000	15037000	26552000	125070000	54731000	70335000	139920000	60420000	79498000	198010000	93317000	104690000	58035	1844	54671	353455;353456;353457;353458;353459;353460;353461;353462;353463;353464;353465;353466;353467	477113;477114;477115;477116;477117;477118;477119;477120;477121;477122;477123;477124;477125;477126	477119			14	
WPFSLSEQQLDAR	0	Unmodified	1575.7682	0.76815616	4164	Q96L92	SNX27	Sorting nexin-27	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	77.174	76.616	2	0.0019054	68564	160511_QHF_FH_JSI11i_3	59.542	45.384			1.0526	0.98774	14.193	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0891	1.2297	NaN	1	0	Median	1.0526	0.98774	NaN	1	0	Median	0.89163	0.94268	NaN	1	1	Median	166900000	90194000	76711000	0	0	0	31515000	15982000	15533000	76815000	36632000	40183000	58574000	37580000	20994000	58036	4164	54672	353468;353469;353470	477127;477128;477129;477130	477128			4	
WPFWLSPR	0	Unmodified	1087.5603	0.56033563	1282;13	P26639;A2RTX5	TARS;TARSL2	Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	2	1	85.581	78.981	2	0.00089183	43698	160513_QHF_FH_JSI10Kac_6	104.37	86.98			1.0157	1.0466	11.9	5	1	Median	1.2456	1.0466	NaN	1	0	Median	0.93465	1.0848	NaN	1	0	Median	1.1891	1.1492	21.397	2	1	Median	0.9833	1.0265	NaN	1	0	Median	5424500000	2683400000	2741100000	1006500000	424020000	582470000	3281000000	1734600000	1546400000	565040000	252750000	312290000	571990000	272080000	299910000	58037	1282;13	54673	353471;353472;353473;353474;353475	477131;477132;477133;477134;477135;477136;477137;477138;477139	477139			9	
WPGDILAYK	1	Unmodified	1061.5546	0.55458155	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	2	0		3								1		1	1	69.872	68.949	2	0.010906	59349	160511_QHF_FH_JSI12i_2	49.418	33.215			1.1801	1.1838	2.0409	3	0	Median	1.39	1.1616	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1801	1.1838	NaN	1	0	Median	1.0852	1.21	NaN	1	0	Median	283770000	141530000	142250000	64086000	35661000	28424000	0	0	0	121650000	57932000	63719000	98037000	47931000	50105000	58038	5279	54674	353476;353477;353478	477140;477141	477140			2	
WPILGQLFFSSK	1	Unmodified	1421.7707	0.77072234	3022	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				102.03	101.84	2	0.034486	82741	160511_QHF_FH_JSI9i_3	39.266	29.034			1.3281	1.1055	NaN	1	0	Median	1.3281	1.1055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16282000	6348700	9933200	16282000	6348700	9933200	0	0	0	0	0	0	0	0	0	58039	3022	54675	353479	477142	477142			1	
WPTETDVSSAK	1	Unmodified	1219.5721	0.57208211	1298	P27816	MAP4	Microtubule-associated protein 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		34.296	33.553	2	0.0033523	30106	160511_QHF_FH_JSI11i_1	68.893	57.124			0.95462	0.86574	26.246	2	2	Median	0.86182	0.7191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0574	1.0423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	755000000	366850000	388150000	352920000	167550000	185360000	0	0	0	402080000	199300000	202780000	0	0	0	58040	1298	54676	353480;353481	477143;477144	477143			2	
WPTSGQLFLGHPK	1	Unmodified	1466.767	0.76703394	4427	Q9BTY2	FUCA2	Plasma alpha-L-fucosidase	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			61.541	60.022	3	0.00067548	49199	160511_QHF_FH_JSI9i_3	56.482	50.044			0.87883	0.87152	12.898	2	0	Median	1.1544	0.95474	NaN	1	0	Median	0.66904	0.79555	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	192610000	100660000	91955000	99438000	43094000	56345000	93175000	57564000	35610000	0	0	0	0	0	0	58041	4427	54677	353482;353483	477145	477145			1	
WPVSMFEK	1	Unmodified	1022.4895	0.48953845	992	P11216	PYGB	Glycogen phosphorylase, brain form	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		5.525	5.3295	3	0.064437	3103	160511_QHF_FH_JSI11i_2	8.8629	2.0388			0.88881	0.90027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88881	0.90027	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	265160000	105960000	159200000	0	0	0	0	0	0	265160000	105960000	159200000	0	0	0	58042	992	54678	353484	477146	477146			1	
WPYAGTAEAIK	1	Unmodified	1205.6081	0.60807369	3	P0DPI2;A0A0B4J2D5			yes	no	0	0	0	0			By MS/MS		2	0		1										1		49.546	49.021	2	0.056686	42340	160511_QHF_FH_JSI11i_2	42.161	28.166			1.0721	1.0888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0721	1.0888	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98272000	34431000	63841000	0	0	0	0	0	0	98272000	34431000	63841000	0	0	0	58043	3	54679	353485	477147	477147			1	
WPYQNGFTFHTWLR	0	Unmodified	1851.8845	0.88452332	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	83.37	75.486	3	0.00028991	42467	160513_QHF_FH_JSI10Kac_6	71.692	59.546			0.95962	1.0324	29.883	3	0	Median	0.81672	0.70067	NaN	1	0	Median	1.0491	1.2612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95962	1.0324	NaN	1	0	Median	229590000	125670000	103920000	50090000	33455000	16635000	150150000	75690000	74465000	0	0	0	29342000	16524000	12819000	58044	1718	54680	353486;353487;353488;353489	477148;477149;477150;477151;477152	477152			3	
WQALLVQIR	0	Unmodified	1125.6659	0.66586334	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			9.5	6.5			1						1		2			77.5	71.434	2	0.010781	39061	160513_QHF_FH_JSI10Kac_6	57.177	39.938			0.95496	1.1401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95496	1.1401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	319420000	173440000	145970000	0	0	0	319420000	173440000	145970000	0	0	0	0	0	0	58045	2517	54681	353490;353491	477153;477154	477154			2	
WQALLVQIRK	1	Unmodified	1253.7608	0.76082635	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	68.832	60.303	3	0.001787	31793	160513_QHF_FH_JSI12Kac_6	65.347	57.243			0.54568	0.50848	92.583	5	5	Median	1.0344	0.8842	89.94	2	2	Median	0.68607	0.80735	155.09	2	2	Median	NaN	NaN	NaN	0	0	Median	0.48362	0.50848	NaN	1	1	Median	113880000	64017000	49868000	23968000	11878000	12090000	82657000	46971000	35686000	0	0	0	7259900	5167700	2092200	58046	2517	54682	353492;353493;353494;353495;353496	477155;477156;477157;477158;477159	477157			5	
WQALPALR	0	Unmodified	953.54469	0.54468557	2962	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	2.75	0.433		1	3							2	1		1	58.434	57.354	2	0.013047	47992	160511_QHF_FH_JSI10i_3	52.683	32.401			0.8565	0.86219	12.326	4	1	Median	1.0798	0.91183	14.344	2	1	Median	0.78108	0.90227	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73986	0.7572	NaN	1	0	Median	145070000	75315000	69754000	57495000	26709000	30786000	37020000	20704000	16316000	0	0	0	50554000	27902000	22653000	58047	2962	54683	353497;353498;353499;353500	477160;477161;477162	477160			3	
WQASSLPADDLCTENAIMLK	1	Unmodified	2262.0661	0.066054015	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	87.067	86.581	3	0.046594	78833	160511_QHF_FH_JSI12i_1	24.029	9.7194			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9575800	0	9575800	0	0	0	0	0	0	0	0	0	9575800	0	9575800	58048	2517	54684	353501	477163	477163			1	
WQATVHAAESVDEK	1	Unmodified	1569.7423	0.74233534	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	31.924	31.846	2;3	0.00013833	26877	160511_QHF_FH_JSI12i_3	106.49	85.622			0.71989	0.70455	1.3353	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71989	0.70455	1.3353	2	0	Median	139490000	71264000	68225000	0	0	0	0	0	0	0	0	0	139490000	71264000	68225000	58049	4890	54685	353502;353503;353504	477164;477165;477166;477167;477168	477168			5	
WQDEDGK	1	Unmodified	876.36136	0.36136105	1484	P39023	RPL3	60S ribosomal protein L3	yes	yes	0	0	0	0	By matching	By MS/MS	By matching		1	0	3									1	1	1		8.8227	8.4711	2	0.04276	6390	160511_QHF_FH_JSI10i_1	46.016	37.675			0.75609	0.87923	29.452	3	0	Median	1.4601	1.2274	NaN	1	0	Median	0.75609	0.87923	NaN	1	0	Median	0.71118	0.68224	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	135430000	74411000	61017000	37954000	16871000	21083000	49771000	29114000	20658000	47702000	28426000	19276000	0	0	0	58050	1484	54686	353505;353506;353507	477169	477169			1	
WQDIQNDPR	0	Unmodified	1170.5418	0.54178503	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	no	no	0	0	0	0				By MS/MS	5.67	5.91	1	1					1						3	26.525	22.858	2	0.0019838	13820	160513_QHF_FH_JSI12Kac_4	81.525	57.37			1.3156	1.3991	8.7968	3	1	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3156	1.3991	8.7968	3	1	Plateau	142320000	72774000	69549000	0	0	0	0	0	0	0	0	0	142320000	72774000	69549000	58051	2578	54687	353508;353509;353510	477170;477171;477172;477173	477173			4	
WQEVIPYTPAMQR	0	Unmodified	1617.7973	0.79734779	934	P09601	HMOX1	Heme oxygenase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	70.466	69.512	2	0.012099	60794	160511_QHF_FH_JSI11i_2	46.352	30.813			0.91301	0.98559	0.048484	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92457	0.98525	NaN	1	0	Median	0.9016	0.98593	NaN	1	1	Median	56825000	30031000	26794000	0	0	0	0	0	0	38511000	20753000	17758000	18314000	9278500	9035700	58052	934	54688	353511;353512	477174;477175	477175			2	
WQFLTLR	0	Unmodified	962.53379	0.53378653	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	1	2	2	79.108	78.311	2	0.013047	68774	160511_QHF_FH_JSI11i_2	68.422	47.268			0.82279	0.82759	7.7285	6	1	Median	1.0843	0.88402	NaN	1	0	Median	0.74579	0.86084	NaN	1	0	Median	0.82279	0.78938	0.32075	2	0	Median	0.85415	0.871	12.801	2	1	Median	286480000	129030000	157450000	87318000	31993000	55325000	67029000	34416000	32613000	74879000	34930000	39949000	57259000	27696000	29562000	58053	5215	54689	353513;353514;353515;353516;353517;353518	477176;477177;477178;477179;477180;477181;477182;477183	477181			8	
WQFSMSAIK	1	Unmodified	1096.5376	0.53755128	203	O14776	TCERG1	Transcription elongation regulator 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	1	1	2	2	73.881	70.218	2	0.0010523	63419	160511_QHF_FH_JSI11i_3	81.296	65.857			0.66086	0.7372	80.617	6	4	Median	1.0527	0.84537	NaN	1	1	Median	0.62231	0.71099	NaN	1	1	Median	0.4298	0.41521	116.67	2	1	Median	0.33923	0.35385	108.92	2	1	Median	2550300000	2156600000	393700000	95921000	42901000	53020000	153880000	100390000	53488000	844860000	701720000	143130000	1455700000	1311600000	144050000	58054	203	54690	353519;353520;353521;353522;353523;353524	477184;477185;477186;477187;477188	477184			5	
WQFTLPMMSTLYR	0	2 Oxidation (M)	1704.8004	0.80038426	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	2	0				By MS/MS	16	0									1				1	84.704	75.262	2	0.03537	40122	160513_QHF_FH_JSI12Kac_6	30.004	10.345			1.1699	1.2734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1699	1.2734	NaN	1	0	Median	17001000	8018200	8983200	0	0	0	0	0	0	0	0	0	17001000	8018200	8983200	58055	3101	54691	353525	477189	477189			1	
WQGELQR	0	Unmodified	915.45626	0.45626449	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching		3	0			3							1	1	1		10.318	9.8696	3	0.049546	7408	160511_QHF_FH_JSI9i_3	19.636	1.5775			0.69329	0.56213	22.758	3	0	Median	0.69329	0.56213	NaN	1	0	Median	0.36593	0.44042	NaN	1	0	Median	0.73571	0.694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	332680000	205140000	127540000	182500000	114030000	68477000	90234000	62435000	27799000	59944000	28677000	31267000	0	0	0	58056	2305	54692	353526;353527;353528	477190	477190			1	
WQGLWNIPTYK	1	Unmodified	1404.719	0.71902112	4470	Q9BVG9	PTDSS2	Phosphatidylserine synthase 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			2							1			1	85.519	84.821	2	0.045129	73579	160511_QHF_FH_JSI12i_3	49.35	43.569			1.1595	1.0689	16.208	2	0	Median	1.137	0.95319	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1825	1.1987	NaN	1	0	Median	44304000	18732000	25572000	15615000	5509900	10105000	0	0	0	0	0	0	28689000	13222000	15467000	58057	4470	54693	353529;353530	477191;477192	477192			1	
WQGNDIVVK	1	Unmodified	1057.5556	0.55564418	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	40.266	39.352	2	0.0012639	33766	160511_QHF_FH_JSI11i_2	69.812	29.714			0.56023	0.5967	62.443	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38002	0.3837	NaN	1	0	Median	0.8259	0.92792	NaN	1	1	Median	153930000	102760000	51172000	0	0	0	0	0	0	98822000	69319000	29503000	55105000	33436000	21669000	58058	2403	54694	353531;353532	477193;477194	477194			2	
WQHDLFDSGFGGGAGVETGGK	1	Unmodified	2120.9552	0.95518166	3337	Q86V81	ALYREF	THO complex subunit 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.78	5.04		7	8						3	3	3	5	7	69.316	67.239	2;3	4.7947E-18	59588	160511_QHF_FH_JSI11i_3	144.5	141.53			1.0403	1.0813	22.181	16	4	Median	1.2319	1.0646	10.446	2	0	Median	0.96529	1.2025	17.804	3	0	Median	1.1698	1.1015	24.371	5	2	Median	0.88895	0.9303	24.251	6	2	Median	3922700000	1852300000	2070400000	135380000	66376000	69004000	394310000	185600000	208710000	1443500000	692120000	751400000	1949500000	908230000	1041300000	58059	3337	54695	353533;353534;353535;353536;353537;353538;353539;353540;353541;353542;353543;353544;353545;353546;353547;353548;353549;353550	477195;477196;477197;477198;477199;477200;477201;477202;477203;477204;477205;477206;477207;477208;477209;477210;477211;477212;477213;477214;477215;477216;477217;477218;477219;477220;477221;477222;477223	477198			27	
WQIGEQEFEALMR	0	Unmodified	1635.7715	0.77152697	1440	P35611	ADD1	Alpha-adducin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	96.401	96.065	2	0.0085143	82787	160511_QHF_FH_JSI12i_2	50.284	34.03			0.89848	0.90696	1.0321	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.942	0.91361	NaN	1	1	Median	0.85696	0.90037	NaN	1	0	Median	31371000	18564000	12807000	0	0	0	0	0	0	17549000	11168000	6380600	13823000	7396100	6426400	58060	1440	54696	353551;353552	477224;477225	477224			2	
WQLDNWLNK	1	Unmodified	1215.6037	0.60365701	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	79.497	79.242	2	0.00079779	68781	160511_QHF_FH_JSI12i_3	73.931	49.008			1.2757	1.2917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2757	1.2917	NaN	1	0	Median	35025000	16181000	18844000	0	0	0	0	0	0	0	0	0	35025000	16181000	18844000	58061	5294	54697	353553	477226;477227	477227			2	
WQLSVATEQPELEGPR	0	Unmodified	1838.9163	0.91627696	4940	Q9NR30	DDX21	Nucleolar RNA helicase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.737	3	4	2							1	2	3	3	73.682	73.141	2	4.8315E-22	63071	160511_QHF_FH_JSI12i_2	179.67	161.54			0.98991	1.0842	22.289	9	5	Median	1.0999	0.92481	NaN	1	1	Median	1.0043	1.2169	14.765	2	1	Median	0.85053	1.2573	27.181	3	2	Plateau	1.1251	1.189	27.583	3	1	Plateau	665470000	332260000	333220000	64593000	32195000	32398000	142110000	76507000	65607000	252320000	121450000	130880000	206440000	102110000	104330000	58062	4940	54698	353554;353555;353556;353557;353558;353559;353560;353561;353562	477228;477229;477230;477231;477232;477233;477234;477235;477236;477237;477238;477239;477240	477233			13	
WQLYAAQSTK	1	Unmodified	1194.6033	0.60332266	751	O96005	CLPTM1	Cleft lip and palate transmembrane protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	1	2	2	50.524	44.257	2	0.00065821	37883	160511_QHF_FH_JSI12i_3	70.552	65.563			1.2067	1.181	9.8973	6	0	Median	1.4169	1.174	NaN	1	0	Median	0.93112	1.1284	NaN	1	0	Median	1.1138	1.08	13.498	2	0	Median	1.2067	1.2762	3.9928	2	0	Median	445130000	206570000	238560000	16489000	7390500	9098900	20905000	10394000	10511000	187430000	91753000	95682000	220300000	97035000	123270000	58063	751	54699	353563;353564;353565;353566;353567;353568	477241;477242;477243;477244;477245;477246;477247;477248;477249;477250;477251	477248			11	
WQMLIGK	1	Unmodified	874.47349	0.47349446	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							3	2	3	2	57.716	56.856	2	0.014353	46736	160511_QHF_FH_JSI9i_3	66.994	45.693			1.0223	1.0563	25.794	10	5	Median	1.433	1.2159	50.703	3	2	Median	0.8332	1.0113	20.911	2	1	Median	1.0814	1.0607	9.6358	3	2	Median	0.96814	1.023	3.9465	2	0	Median	1162400000	570740000	591610000	192360000	83463000	108900000	175660000	93814000	81849000	459540000	232210000	227330000	334790000	161250000	173540000	58064	3250	54700	353569;353570;353571;353572;353573;353574;353575;353576;353577;353578	477252;477253;477254;477255;477256;477257;477258;477259;477260;477261	477257			10	
WQMNPYDR	0	Unmodified	1108.476	0.47601365	3828	Q92499	DDX1	ATP-dependent RNA helicase DDX1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	4.67	5.09		3	2						1	1		3	2	40.296	39.681	2	0.0016392	34099	160511_QHF_FH_JSI11i_2	86.794	54.859			1.0895	1.0279	18.869	5	0	Median	1.0895	0.95612	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2251	1.1834	19.914	2	0	Median	1.1085	1.1809	25.835	2	0	Median	604800000	290820000	313990000	103610000	47460000	56145000	0	0	0	305440000	141750000	163690000	195760000	101600000	94155000	58065	3828	54701	353579;353580;353581;353582;353583;353584	477262;477263;477264;477265;477266;477267;477268;477269;477270	477268			9	
WQNADLNGK	1	Unmodified	1044.4989	0.49885759	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				23.059	22.077	2	0.0070362	18856	160511_QHF_FH_JSI9i_2	62.546	43.764			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7740400	0	7740400	7740400	0	7740400	0	0	0	0	0	0	0	0	0	58066	1060	54702	353585	477271	477271			1	
WQNNLLPSR	0	Unmodified	1126.5883	0.5883413	1986	P62244	RPS15A	40S ribosomal protein S15a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	48.83	48.026	2	7.1337E-06	39964	160511_QHF_FH_JSI10i_3	112.84	97.691			0.91884	0.89909	11.377	11	0	Median	1.2011	0.9867	12.732	2	0	Median	0.88471	1.0126	11.375	3	0	Median	0.91884	0.88047	1.6996	3	0	Median	0.83949	0.85055	12.612	3	0	Median	7495200000	3807400000	3687800000	2382400000	1056900000	1325500000	2605000000	1408800000	1196200000	1488000000	757470000	730550000	1019800000	584150000	435610000	58067	1986	54703	353586;353587;353588;353589;353590;353591;353592;353593;353594;353595;353596	477272;477273;477274;477275;477276;477277;477278;477279;477280;477281;477282;477283;477284;477285;477286;477287;477288;477289	477276			17	
WQNSYSIK	1	Unmodified	1024.4978	0.49779495	2715;2398	Q13404;Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.95	1	4	4						3	3	3	3	3	34.811	31.989	2	0.0016273	27757	160511_QHF_FH_JSI11i_3	86.953	54.993			1.0163	0.90776	18.395	12	0	Median	1.0723	0.81935	6.0777	3	0	Plateau	0.73588	0.89483	24.097	3	0	Median	0.99216	0.96189	19.278	3	0	Median	1.0411	1.126	26.408	3	0	Median	5027300000	2335800000	2691500000	662920000	292040000	370880000	1035600000	551170000	484400000	1533000000	741020000	792030000	1795800000	751600000	1044200000	58068	2398;2715	54704	353597;353598;353599;353600;353601;353602;353603;353604;353605;353606;353607;353608	477290;477291;477292;477293;477294;477295;477296;477297;477298;477299;477300;477301;477302;477303;477304;477305;477306;477307;477308;477309;477310;477311;477312;477313;477314;477315;477316;477317;477318;477319	477292			30	
WQPDTEEEYEDSSGNVVNK	1	Unmodified	2224.9397	0.93965075	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	49.975	49.475	2	1.0775E-07	44524	160511_QHF_FH_JSI10i_1	106.17	100.51			0.87803	1.014	2.9362	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.86229	1.014	NaN	1	0	Median	1.0797	1.0355	NaN	1	0	Median	0.94233	0.97717	NaN	1	0	Median	136610000	73539000	63072000	0	0	0	52398000	29404000	22994000	36032000	19919000	16113000	48180000	24215000	23965000	58069	2319	54705	353609;353610;353611	477320;477321;477322;477323;477324;477325;477326	477326			7	
WQPDTEEEYEDSSGNVVNKK	2	Unmodified	2353.0346	0.03461377	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.9	0.7	3	5	2							1	2	3	4	44.629	43.931	3	1.1185E-08	38245	160511_QHF_FH_JSI9i_2	104.89	101.48			1.0177	0.97815	19.165	10	2	Median	0.97315	0.84042	NaN	1	0	Median	0.9324	1.1174	27.187	2	0	Median	1.0642	1.0378	16.373	3	0	Median	0.92079	0.95155	21.756	4	2	Median	760930000	389630000	371290000	45228000	27240000	17988000	183030000	88476000	94557000	266330000	127160000	139170000	266330000	146750000	119580000	58070	2319	54706	353612;353613;353614;353615;353616;353617;353618;353619;353620;353621	477327;477328;477329;477330;477331;477332;477333;477334;477335;477336;477337;477338;477339;477340;477341;477342;477343;477344;477345;477346;477347;477348	477338			22	
WQPGEEPAGSVVQDSR	0	Unmodified	1740.8067	0.80672651	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	48.041	47.185	2	1.715E-05	42090	160511_QHF_FH_JSI9i_1	116.51	97.379			0.98946	0.97578	8.3569	9	3	Median	1.1001	0.93295	12.817	3	2	Median	0.81206	0.96432	1.6708	2	0	Median	1.0435	1.0243	9.4395	2	1	Median	0.9738	1.0411	5.0296	2	0	Median	760120000	364420000	395700000	182120000	81492000	100620000	187450000	101860000	85592000	191060000	87753000	103310000	199490000	93310000	106180000	58071	5663	54707	353622;353623;353624;353625;353626;353627;353628;353629;353630	477349;477350;477351;477352;477353;477354;477355;477356;477357;477358;477359;477360;477361;477362;477363;477364	477359			16	
WQPGEEPAGSVVQDSRLDTIFFAK	1	Unmodified	2676.3184	0.31838061	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		96.587	96.587	3	0.020072	86058	160511_QHF_FH_JSI11i_3	31.775	24.744			1.1181	1.0698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1181	1.0698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26174000	12502000	13672000	0	0	0	0	0	0	26174000	12502000	13672000	0	0	0	58072	5663	54708	353631	477365	477365			1	
WQPLLSTVTGVHK	1	Unmodified	1464.8089	0.80889876	719	O95714;Q9BVR0	HERC2;HERC2P3	E3 ubiquitin-protein ligase HERC2;Putative HERC2-like protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			66.337	64.842	3	0.0032026	53160	160511_QHF_FH_JSI9i_3	53.001	44.897			0.35255	0.33363	19.803	2	2	Median	0.3645	0.29003	NaN	1	1	Median	0.34098	0.38377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61946000	43503000	18443000	30752000	22203000	8549000	31194000	21300000	9893900	0	0	0	0	0	0	58073	719	54709	353632;353633	477366;477367	477367			2	
WQPLYLEIR	0	Unmodified	1216.6604	0.66044361	1125	P17706	PTPN2	Tyrosine-protein phosphatase non-receptor type 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0.816	1	1	1								1	1	1	8.4454	7.9358	3	0.007618	2491	160511_QHF_FH_JSI11i_1	42.599	16.66			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58074	1125	54710	353634;353635;353636	477368;477369;477370	477368			3	
WQPPLSHNGVLTGYVLSYHPLDEGGK	1	Unmodified	2863.4293	0.42932804	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.57	6.43			8						6	6	3	4	1	89.412	85.58	3;4	3.6781E-79	40888	160513_QHF_FH_JSI9Kac_6	213.05	180.79			1.021	0.985	19.912	14	1	Median	1.021	0.85412	24.433	6	0	Median	0.82644	0.97144	17.084	3	1	Median	1.1091	1.0613	18.362	4	0	Median	1.1642	1.222	NaN	1	0	Median	2984900000	1436800000	1548100000	700610000	316220000	384400000	1057500000	515910000	541590000	1007400000	487090000	520320000	219410000	117590000	101820000	58075	1388	54711	353637;353638;353639;353640;353641;353642;353643;353644;353645;353646;353647;353648;353649;353650	477371;477372;477373;477374;477375;477376;477377;477378;477379;477380;477381;477382;477383;477384;477385;477386;477387;477388;477389;477390;477391;477392;477393;477394;477395;477396;477397;477398	477393			28	
WQPTASEPVK	1	Unmodified	1141.5768	0.57677356	2827	Q49A26	GLYR1	Putative oxidoreductase GLYR1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				34.629	33.586	2	0.0035049	29328	160511_QHF_FH_JSI9i_2	69.375	51.527			2.1962	1.8901	NaN	1	1	Median	2.1962	1.8901	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44756000	16611000	28144000	44756000	16611000	28144000	0	0	0	0	0	0	0	0	0	58076	2827	54712	353651	477399	477399			1	
WQQLQAK	1	Unmodified	900.48175	0.48175096	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	20.734	19.599	2	0.022022	16064	160511_QHF_FH_JSI12i_2	59.641	36.622			0.55236	0.61838	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55236	0.61838	NaN	1	1	Median	90323000	54004000	36320000	0	0	0	0	0	0	0	0	0	90323000	54004000	36320000	58077	3101	54713	353652	477400	477400			1	
WQQVWLLALER	0	Unmodified	1440.7878	0.78776939	5458;2199	Q9UPN3;Q03001	MACF1;DST	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	90.643	82.333	2	6.6278E-07	47676	160513_QHF_FH_JSI10Kac_6	105.86	81.009			1.0385	0.8778	11.477	4	0	Linear	1.2918	1.1102	NaN	1	0	Median	0.74976	0.87415	NaN	1	0	Median	1.0286	1.0037	NaN	1	0	Median	1.0485	1.1171	NaN	1	0	Median	386310000	208280000	178020000	53184000	25149000	28034000	194670000	112370000	82303000	93666000	46150000	47516000	44786000	24617000	20169000	58078	5458;2199	54714	353653;353654;353655;353656	477401;477402;477403;477404;477405;477406;477407;477408	477407			8	
WQSGLSINNVFK	1	Unmodified	1391.7197	0.7197494	3123	Q6PIW4	FIGNL1	Fidgetin-like protein 1	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				78.65	77.255	2	0.043315	63562	160511_QHF_FH_JSI9i_3	37.556	27.775			1.0279	0.86778	NaN	1	0	Median	1.0279	0.86778	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11097000	5137800	5959200	11097000	5137800	5959200	0	0	0	0	0	0	0	0	0	58079	3123	54715	353657	477409	477409			1	
WQVINQR	0	Unmodified	942.50355	0.50354903	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	3	0			4							2	1		1	31.36	30.41	2	0.0095833	24807	160511_QHF_FH_JSI9i_3	68.398	48.116			0.9079	0.83889	17.08	3	0	Median	0.9079	0.75625	NaN	1	0	Median	0.90898	1.0558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82451	0.83889	NaN	1	0	Median	168950000	81151000	87799000	73225000	31788000	41437000	62000000	32053000	29947000	0	0	0	33725000	17310000	16415000	58080	4831	54716	353658;353659;353660;353661	477410;477411;477412;477413	477413			4	
WQVVDTPGILDHPLEDR	0	Unmodified	1988.9956	0.99558991	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	81.5	81.274	3	0.0017294	72616	160511_QHF_FH_JSI11i_3	42.633	33.587			0.31227	0.31772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31227	0.31772	NaN	1	1	Median	50992000	39447000	11545000	0	0	0	0	0	0	0	0	0	50992000	39447000	11545000	58081	4559	54717	353662;353663	477414;477415	477414			2	
WQYLLMAAEPYETIAFK	1	Unmodified	2073.0281	0.028135591	2672	Q15428	SF3A2	Splicing factor 3A subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		95.114	87.554	2	0.0014339	51223	160513_QHF_FH_JSI10Kac_6	107.61	85.999			2.1887	2.3613	158.14	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64727	0.77179	NaN	1	1	Median	7.4011	7.2242	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	96690000	57745000	38945000	0	0	0	75471000	55935000	19536000	21218000	1809800	19408000	0	0	0	58082	2672	54718	353664;353665	477416;477417	477417			2	
WREEQMER	0	Unmodified	1162.5189	0.5189411	930	P09496	CLTA	Clathrin light chain A	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			15.924	14.93	3	0.0023237	11695	160511_QHF_FH_JSI9i_3	65.465	26.69			1.424	1.3825	59.532	2	0	Median	2.6494	2.1062	NaN	1	0	Median	0.76543	0.90753	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	104930000	44691000	60237000	50286000	13205000	37081000	54642000	31486000	23156000	0	0	0	0	0	0	58083	930	54719	353666;353667	477418;477419;477420	477420			3	
WRELPDSK	1	Unmodified	1029.5243	0.52434406	2144	Q00059	TFAM	Transcription factor A, mitochondrial	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				21.587	20.317	3	0.019419	16337	160511_QHF_FH_JSI9i_3	37.191	22.04			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58084	2144	54720	353668	477421	477421			1	
WRGEEVAVK	1	Unmodified	1072.5665	0.56654322	1462	P36897	TGFBR1	TGF-beta receptor type-1	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		3	0			3							1	1	1		23.233	22.375	3	0.007994	18782	160511_QHF_FH_JSI11i_3	36.424	21.758			0.61467	0.57886	63.65	3	1	Plateau	1.323	1.0902	NaN	1	0	Median	1.8137	2.0674	NaN	1	1	Median	0.61467	0.57886	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	312570000	143230000	169340000	40540000	16783000	23757000	110040000	31032000	79010000	161990000	95417000	66572000	0	0	0	58085	1462	54721	353669;353670;353671	477422;477423	477422			2	
WRPDEEILK	1	Unmodified	1184.619	0.61897272	962	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	yes	yes	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	2.5	0.5		4	4							1	1	3	3	50.138	49.51	2;3	0.00048136	42247	160511_QHF_FH_JSI12i_3	96.342	73.602			0.96799	0.87327	17.7	7	1	Median	1.0238	0.87327	NaN	1	0	Median	0.49007	0.60575	NaN	1	0	Median	0.91962	0.88758	13.943	2	1	Median	0.98434	1.0101	11.544	3	0	Plateau	688830000	338150000	350680000	35616000	17674000	17942000	28551000	18347000	10205000	247210000	116640000	130570000	377460000	185490000	191960000	58086	962	54722	353672;353673;353674;353675;353676;353677;353678;353679	477424;477425;477426;477427	477427			4	
WRPVDLAQVK	1	Unmodified	1210.6822	0.68224168	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			6							2	1	2	1	52.985	52.159	2;3	8.176E-05	46007	160511_QHF_FH_JSI11i_3	104.22	78.662			0.89634	0.8311	4.678	6	0	Median	1.0073	0.82292	1.5183	2	0	Median	0.71976	0.83985	NaN	1	0	Median	0.89634	0.83112	0.12234	2	0	Median	0.69228	0.74179	NaN	1	0	Median	1186100000	629770000	556320000	399290000	201960000	197320000	237910000	147430000	90474000	478250000	239120000	239130000	70636000	41246000	29390000	58087	1388	54723	353680;353681;353682;353683;353684;353685	477428;477429;477430;477431;477432;477433	477430			6	
WSAEASGKPSPSDPGSGTATMMNSSSR	1	Unmodified	2682.165	0.16499279	2899	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			42.759	41.467	3	0.012643	34613	160511_QHF_FH_JSI10i_3	32.434	29.994			0.67443	0.65721	7.5844	2	1	Median	0.80586	0.69342	NaN	1	0	Median	0.56445	0.62289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	63646000	35852000	27794000	34226000	15469000	18757000	29420000	20383000	9037500	0	0	0	0	0	0	58088	2899	54724	353686;353687	477434;477435	477434			2	
WSANEIQVVVATVAFGMGIDKPDVR	1	Unmodified	2701.3898	0.38977142	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			98.851	91.424	3	9.7351E-27	54500	160513_QHF_FH_JSI10Kac_6	135.75	122.56			0.62583	0.62774	1.7838	2	0	Median	0.73025	0.61987	NaN	1	0	Median	0.53635	0.63571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	302400000	193050000	109350000	97655000	56420000	41235000	204750000	136630000	68113000	0	0	0	0	0	0	58089	1579	54725	353688;353689	477436;477437	477437			1	
WSDVAGLEGAK	1	Unmodified	1131.556	0.55603812	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	44.361	43.617	2	0.0071763	37220	160511_QHF_FH_JSI12i_2	51.276	37.697			0.81207	0.85244	16.027	5	0	Median	1.1627	1.0428	NaN	1	0	Median	0.72737	0.85244	NaN	1	0	Median	0.76341	0.75198	12.579	2	0	Median	0.90648	0.9675	NaN	1	0	Median	417450000	252370000	165080000	46735000	26871000	19865000	114300000	70691000	43612000	215660000	133570000	82090000	40753000	21238000	19516000	58090	507	54726	353690;353691;353692;353693;353694	477438;477439;477440;477441;477442;477443;477444	477440			7	
WSEPNEEELIK	1	Unmodified	1372.6511	0.65106071	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.9	4	5				2	2	1		2	4	2	6	58.907	54.717	2	7.4301E-18	49518	160511_QHF_FH_JSI11i_1	155.84	134.38			0.94352	0.95328	33.831	14	1	Median	1.0807	0.90669	6.4668	2	0	Median	0.80747	0.95837	15.031	4	0	Median	0.79076	0.78699	4.1468	2	0	Median	0.99856	1.0994	46.609	6	1	Median	3938700000	2109600000	1829100000	795960000	379520000	416440000	1146800000	709860000	436990000	819670000	454210000	365470000	1176200000	566000000	610190000	58091	1488	54727	353695;353696;353697;353698;353699;353700;353701;353702;353703;353704;353705;353706;353707;353708	477445;477446;477447;477448;477449;477450;477451;477452;477453;477454;477455;477456;477457;477458;477459;477460;477461;477462;477463;477464;477465;477466;477467;477468;477469;477470;477471;477472;477473;477474;477475;477476	477447			32	
WSETQNVVTK	1	Unmodified	1190.5932	0.5931519	4176	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5	5.2		3					1			1		2	1	32.648	28.669	2	0.0060576	24227	160511_QHF_FH_JSI11i_2	55.064	43.913			0.94701	0.82309	11.663	3	2	Median	0.94701	0.82309	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.97718	0.98145	NaN	1	0	Median	0.72639	0.78717	NaN	1	1	Median	78693000	41327000	37367000	42445000	22384000	20061000	0	0	0	3542200	1577500	1964600	32706000	17365000	15341000	58092	4176	54728	353709;353710;353711;353712	477477;477478;477479;477480;477481	477481			5	
WSFDDVPMTPLR	0	Unmodified	1462.6915	0.69148574	5205	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	92.029	91.534	2	0.0003278	80512	160511_QHF_FH_JSI11i_2	72.434	72.434			0.91068	1.0113	2.632	5	2	Median	1.2113	1.0272	NaN	1	0	Median	0.80822	0.99386	2.4532	2	2	Median	0.98161	1.0064	NaN	1	0	Median	0.91068	1.0488	NaN	1	0	Median	347400000	183550000	163850000	51233000	20019000	31214000	135180000	80190000	54992000	94545000	48054000	46491000	66440000	35283000	31156000	58093	5205	54729	353713;353714;353715;353716;353717	477482;477483;477484;477485;477486;477487;477488;477489;477490;477491;477492;477493	477489			12	
WSFDVFALNEASGEHSLK	1	Unmodified	2035.964	0.96395543	1832	P54750	PDE1A	Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	93.438	93.415	3	0.010153	81004	160511_QHF_FH_JSI12i_3	40.432	32.898			1.4892	1.4835	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4892	1.4835	NaN	1	1	Median	42869000	21508000	21362000	0	0	0	0	0	0	0	0	0	42869000	21508000	21362000	58094	1832	54730	353718	477494	477494			1	
WSFLFSLTDLK	1	Unmodified	1355.7125	0.71253876	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	96.835	88.426	2	1.7387E-07	50045	160513_QHF_FH_JSI9Kac_6	115.7	101.02			0.99712	1.0167	14.698	4	0	Median	1.0531	0.91816	NaN	1	0	Median	0.94415	1.1258	NaN	1	0	Median	1.2464	1.1966	NaN	1	0	Median	0.84071	0.89001	NaN	1	0	Median	1259700000	567980000	691750000	298470000	121520000	176950000	415270000	225520000	189740000	255430000	100500000	154940000	290550000	120440000	170110000	58095	3699	54731	353719;353720;353721;353722	477495;477496;477497;477498	477495			4	
WSFVESLEPSHVVQVR	0	Unmodified	1897.9686	0.96864688	4371	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	3	0			3								1	1	1	84.341	83.875	3	6.9009E-06	72741	160511_QHF_FH_JSI12i_3	82.464	76.56			1.0273	0.95745	23.669	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2001	1.3865	NaN	1	0	Median	1.0273	0.95745	NaN	1	0	Median	0.87604	0.89251	NaN	1	0	Median	309620000	169640000	139980000	0	0	0	41751000	17854000	23897000	158730000	88272000	70458000	109140000	63515000	45624000	58096	4371	54732	353723;353724;353725	477499;477500;477501	477501			2	
WSGLLVTVGEVLEK	1	Unmodified	1528.8501	0.85009487	4171	Q96M27	PRRC1	Protein PRRC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.41			5						7	4	6	1	1	97.569	93.527	2;3	0.0001536	48220	160513_QHF_FH_JSI9Kac_6	92.457	79.32			0.95079	0.88672	64.117	11	7	Median	1.3187	1.1084	53.174	4	3	Median	0.72077	0.82248	88.966	5	4	Median	0.89821	0.83164	NaN	1	0	Median	0.95079	0.95535	NaN	1	0	Median	1031700000	514050000	517660000	246750000	108160000	138590000	436840000	243120000	193720000	156030000	69985000	86047000	192090000	92792000	99296000	58097	4171	54733	353726;353727;353728;353729;353730;353731;353732;353733;353734;353735;353736;353737	477502;477503;477504;477505;477506;477507;477508;477509;477510;477511;477512;477513;477514	477507			13	
WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK	1	Unmodified	3470.7106	0.71064786	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.59	0.492		21	30							20	23	6	2	89.602	88.916	3;4	7.8471E-68	77340	160511_QHF_FH_JSI11i_3	202.3	198.07			0.93782	0.94901	20.877	51	15	Median	1.2379	1.0538	23.199	20	7	Median	0.81506	0.93769	17.166	23	6	Median	1.0199	0.96116	24.335	6	2	Median	0.84441	0.84303	10.87	2	0	Median	5118600000	2608700000	2509900000	956110000	473520000	482590000	2040900000	1135700000	905200000	1644400000	758180000	886200000	477240000	241340000	235900000	58098	1343	54734	353738;353739;353740;353741;353742;353743;353744;353745;353746;353747;353748;353749;353750;353751;353752;353753;353754;353755;353756;353757;353758;353759;353760;353761;353762;353763;353764;353765;353766;353767;353768;353769;353770;353771;353772;353773;353774;353775;353776;353777;353778;353779;353780;353781;353782;353783;353784;353785;353786;353787;353788	477515;477516;477517;477518;477519;477520;477521;477522;477523;477524;477525;477526;477527;477528;477529;477530;477531;477532;477533;477534;477535;477536;477537;477538;477539;477540;477541;477542;477543;477544;477545;477546;477547;477548;477549;477550;477551;477552;477553;477554;477555;477556;477557;477558;477559;477560;477561;477562;477563;477564;477565;477566;477567;477568;477569;477570;477571;477572;477573;477574;477575;477576;477577;477578;477579;477580;477581;477582;477583;477584;477585;477586;477587;477588;477589;477590;477591;477592;477593;477594;477595;477596;477597;477598;477599;477600;477601;477602;477603;477604;477605;477606;477607;477608;477609;477610;477611;477612;477613;477614;477615;477616	477517			102	
WSIHIVIPK	1	Unmodified	1091.6492	0.64915064	3647	Q8NEZ4	KMT2C	Histone-lysine N-methyltransferase 2C	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			76.211	69.961	3	0.0050306	38162	160513_QHF_FH_JSI10Kac_6	45.368	38.473			0.8343	0.99639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.8343	0.99639	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39091000	21177000	17914000	0	0	0	39091000	21177000	17914000	0	0	0	0	0	0	58099	3647	54735	353789	477617;477618	477617			2	
WSIKQITPQQQEK	2	Acetyl (K)	1654.8679	0.8678702	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.467	62.736	2	0.020545	33492	160513_QHF_FH_JSI11Kac_5	58.676	43.8			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2261000	2261000	0	0	0	0	0	0	0	2261000	2261000	0	0	0	0	58100	2094	54736	353790	477619	477619	2189		1	
WSLEALNR	0	Unmodified	987.51378	0.51377937	2889	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.735	57.481	2	0.042893	49502	160511_QHF_FH_JSI12i_3	47.443	29.408			1.2984	1.2825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2984	1.2825	NaN	1	1	Median	43250000	22821000	20429000	0	0	0	0	0	0	0	0	0	43250000	22821000	20429000	58101	2889	54737	353791	477620	477620			1	
WSLELEDQER	0	Unmodified	1303.6044	0.60444487	1467	P37198	NUP62	Nuclear pore glycoprotein p62	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		59.53	58.841	2	0.00774	51077	160511_QHF_FH_JSI11i_2	51.092	40.86			0.71757	0.79851	14.872	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71423	0.88706	NaN	1	0	Median	0.72092	0.71881	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	68133000	34132000	34001000	0	0	0	21893000	11041000	10852000	46240000	23091000	23149000	0	0	0	58102	1467	54738	353792;353793	477621;477622	477621			2	
WSLLQQQK	1	Unmodified	1029.5607	0.56072956	51	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.04	6.57	4	4	4				4	5	5	5	8	6	7	54.407	48.889	2	0.00013352	41538	160511_QHF_FH_JSI12i_3	126.24	79.176		+	0.92559	0.94154	36.821	22	2	Median	1.1212	0.91573	43.866	4	1	Median	0.73842	0.87361	53.848	6	1	Median	1.0009	1.0034	16.926	6	0	Median	0.83833	0.89874	24.936	6	0	Median	23809000000	11397000000	12412000000	3612400000	1558400000	2054000000	4944300000	2753800000	2190500000	6526000000	3055600000	3470400000	8726200000	4029400000	4696800000	58103	51	54739	353794;353795;353796;353797;353798;353799;353800;353801;353802;353803;353804;353805;353806;353807;353808;353809;353810;353811;353812;353813;353814;353815;353816;353817;353818;353819	477623;477624;477625;477626;477627;477628;477629;477630;477631;477632;477633;477634;477635;477636;477637;477638;477639;477640;477641;477642;477643;477644;477645;477646;477647;477648;477649;477650;477651;477652;477653;477654;477655;477656;477657;477658;477659;477660;477661;477662;477663;477664;477665;477666;477667;477668;477669;477670;477671;477672;477673	477668			51	
WSLLQQQKTAR	1	Acetyl (K)	1399.7572	0.75719754	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.4	0.728							1	2	4	1	2	3	1	65.807	55.901	2	4.176E-09	30692	160513_QHF_FH_JSI10Kac_6	123.96	96.653		+	0.52667	0.54545	44.334	6	1	Median	NaN	NaN	NaN	0	0	Median	0.70607	0.82865	16.16	2	0	Median	0.3952	0.36547	16.212	3	1	Median	0.64666	0.69875	NaN	1	0	Median	148110000	96116000	51995000	4400600	4400600	0	60695000	34742000	25953000	67806000	46086000	21720000	15210000	10887000	4322600	58104	51	54740	353820;353821;353822;353823;353824;353825;353826	477674;477675;477676;477677;477678;477679;477680;477681;477682;477683	477683	26		10	
WSLQSEAHR	0	Unmodified	1112.5363	0.53630573	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	4	3	3	28.45	25.188	2;3	6.675E-05	20735	160511_QHF_FH_JSI10i_3	70.389	65.693			0.93403	1.0361	14.965	13	1	Median	1.5048	1.2211	7.0644	3	0	Plateau	0.89608	1.0587	17.399	4	1	Median	0.99408	0.962	16.58	3	0	Median	0.92519	0.91696	3.1957	3	0	Plateau	2350800000	1146900000	1203900000	504000000	198860000	305140000	502940000	282810000	220130000	859740000	442530000	417210000	484160000	222720000	261450000	58105	2751	54741	353827;353828;353829;353830;353831;353832;353833;353834;353835;353836;353837;353838;353839	477684;477685;477686;477687;477688;477689;477690;477691;477692;477693;477694;477695;477696;477697;477698;477699;477700;477701;477702	477690			18	
WSMPELAEVEENK	1	Unmodified	1560.713	0.71300904	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.004	77.176	2	0.0021387	67805	160511_QHF_FH_JSI11i_2	57.802	50.913			1.371	1.0746	37.802	4	1	Linear	0.88388	0.77018	NaN	1	1	Median	0.90504	1.1267	NaN	1	0	Median	1.036	1.025	NaN	1	0	Median	1.7658	1.9047	NaN	1	0	Median	150770000	70504000	80269000	24017000	13626000	10391000	41489000	21169000	20320000	42445000	19214000	23231000	42823000	16495000	26327000	58106	2578	54742	353840;353841;353842;353843	477703;477704;477705	477705			3	
WSMPELAEVEENKK	2	Unmodified	1688.808	0.80797206	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	67.33	66.813	3	3.4085E-05	57916	160511_QHF_FH_JSI12i_3	80.706	76.315			0.80614	0.87934	24.388	5	0	Median	0.80614	0.70924	NaN	1	0	Median	0.71878	0.87934	NaN	1	0	Median	0.93489	0.9	33.739	2	0	Median	1.1545	1.1655	NaN	1	0	Median	476360000	230240000	246120000	36791000	23327000	13464000	65969000	37109000	28860000	209310000	91822000	117490000	164290000	77984000	86304000	58107	2578	54743	353844;353845;353846;353847;353848	477706;477707;477708;477709;477710;477711;477712	477712			7	
WSNAKMEIATK	2	Acetyl (K)	1319.6544	0.65437195	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		61.912	51.005	2	0.045021	27837	160513_QHF_FH_JSI11Kac_5	61.344	42.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58108	2641	54744	353849	477713	477713			1	
WSNFDPTGLER	0	Unmodified	1320.6099	0.6098646	5035;2957	Q5T9A4;Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	62.151	61.253	2	0.00095352	52401	160511_QHF_FH_JSI12i_2	67.207	59.727			1.1504	1.1781	65.818	3	0	Plateau	NaN	NaN	NaN	0	0	Median	3.5978	4.3509	NaN	1	0	Median	1.1504	1.1781	NaN	1	0	Median	1.7973	1.9695	NaN	1	0	Median	205440000	82636000	122810000	0	0	0	52232000	14704000	37528000	95066000	47389000	47676000	58144000	20542000	37602000	58109	2957;5035	54745	353850;353851;353852;353853	477714;477715;477716;477717	477714			2	
WSNIYEDNGDDAPQNAK	1	Unmodified	1935.8235	0.82349878	3559	Q8N6N3	C1orf52	UPF0690 protein C1orf52	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	40.802	40.385	2	1.8009E-08	36345	160511_QHF_FH_JSI11i_1	133.32	122.42			0.56984	0.56062	47.511	4	4	Median	NaN	NaN	NaN	0	0	Median	0.42005	0.47551	NaN	1	1	Median	0.88422	0.84489	66.142	2	2	Median	0.58752	0.59381	NaN	1	1	Median	76272000	47601000	28671000	0	0	0	13530000	12039000	1491300	44876000	22499000	22376000	17866000	13063000	4803200	58110	3559	54746	353854;353855;353856;353857	477718;477719;477720;477721	477718			4	
WSPALQIR	0	Unmodified	969.5396	0.53960019	1937	P61088;Q5JXB2	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	2	3	3	4	59.204	55.305	2	0.00035431	47362	160511_QHF_FH_JSI12i_3	111.04	57.481			0.84389	0.90482	10.035	11	2	Median	1.2877	1.032	4.4397	2	0	Median	0.72826	0.87389	8.3441	3	1	Median	0.96796	0.90482	12.792	3	0	Median	0.84055	0.85097	3.3666	3	1	Plateau	5097100000	2630600000	2466500000	1278300000	538040000	740290000	1449600000	847080000	602560000	1214100000	638270000	575820000	1155000000	607180000	547820000	58111	1937	54747	353858;353859;353860;353861;353862;353863;353864;353865;353866;353867;353868;353869	477722;477723;477724;477725;477726;477727;477728;477729;477730;477731;477732;477733;477734;477735;477736;477737	477735			16	
WSPESPLQAPR	0	Unmodified	1266.6357	0.63568542	3593	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	55.101	54.427	2	2.0917E-05	46750	160511_QHF_FH_JSI12i_3	102.61	91.779			1.061	1.0658	14.936	6	0	Median	0.99765	0.86265	NaN	1	0	Median	0.7106	0.85386	NaN	1	0	Median	1.2004	1.1713	3.2555	2	0	Median	1.0255	1.0658	9.3469	2	0	Median	745950000	347010000	398940000	97349000	48465000	48884000	92157000	48576000	43581000	299320000	133350000	165970000	257120000	116620000	140500000	58112	3593	54748	353870;353871;353872;353873;353874;353875	477738;477739;477740;477741;477742;477743;477744;477745;477746;477747;477748	477748			11	
WSPIASTLPELVQR	0	Unmodified	1595.8671	0.86714192	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							4	4	1	1	92.251	91.682	2;3	8.8586E-05	75174	160511_QHF_FH_JSI9i_3	57.106	52.202			0.9713	0.97803	14.867	10	2	Median	1.2153	1.0312	5.7733	4	1	Median	0.74536	0.86534	15.963	4	1	Median	1.0488	0.98976	NaN	1	0	Median	0.72548	0.73201	NaN	1	0	Median	449210000	223510000	225690000	176220000	73878000	102350000	151850000	83425000	68429000	84731000	45652000	39079000	36395000	20559000	15836000	58113	2441	54749	353876;353877;353878;353879;353880;353881;353882;353883;353884;353885	477749;477750;477751;477752;477753;477754;477755;477756;477757;477758;477759;477760;477761;477762;477763;477764;477765;477766;477767;477768	477761			20	
WSPTGPGTNNPNANLMLASASFDSTVR	0	Unmodified	2804.3188	0.31879132	4568	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	90.186	90.12	3	7.4594E-06	78238	160511_QHF_FH_JSI12i_3	53.705	50.876			1.0638	1.1213	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0638	1.1213	NaN	1	0	Median	21709000	9879800	11829000	0	0	0	0	0	0	0	0	0	21709000	9879800	11829000	58114	4568	54750	353886;353887	477769;477770;477771	477771			3	
WSPTHEQQLISGSLDNIVK	1	Unmodified	2151.096	0.096032235	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.192	80.072	3	8.0079E-06	69467	160511_QHF_FH_JSI12i_3	81.967	76.862			1.092	1.0764	3.2756	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1587	1.1016	NaN	1	0	Median	1.0291	1.0518	NaN	1	0	Median	313830000	162250000	151580000	0	0	0	0	0	0	126410000	68306000	58102000	187420000	93945000	93478000	58115	4592	54751	353888;353889	477772;477773;477774	477773			3	
WSPVQSVEK	1	Unmodified	1058.5397	0.53965977	1914	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	42.183	41.599	2	0.00064398	35414	160511_QHF_FH_JSI12i_3	76.827	61.676			1.032	1.0186	17.522	7	3	Median	1.09	0.96084	NaN	1	0	Median	0.77229	0.94347	NaN	1	0	Median	1.0078	1.0186	17.675	3	3	Median	1.201	1.2881	14.485	2	0	Median	699400000	377840000	321560000	100550000	54713000	45842000	76477000	35247000	41230000	299550000	177400000	122150000	222810000	110480000	112330000	58116	1914	54752	353890;353891;353892;353893;353894;353895;353896	477775;477776;477777;477778;477779;477780;477781;477782	477782			8	
WSQQVER	0	Unmodified	931.45118	0.45117911	2874	Q5BJD5	TMEM41B	Transmembrane protein 41B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	13.714	13.436	2	0.012734	10444	160511_QHF_FH_JSI12i_3	68.915	41.39			1.7809	1.9751	63.746	2	0	Median	NaN	NaN	NaN	0	0	Median	2.4954	3.0999	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.271	1.2584	NaN	1	0	Median	103650000	45169000	58477000	0	0	0	60502000	20670000	39832000	0	0	0	43144000	24498000	18646000	58117	2874	54753	353897;353898;353899	477783;477784	477784			2	
WSSAIQNVTDTK	1	Unmodified	1348.6623	0.6622941	4876	Q9HD67	MYO10	Unconventional myosin-X	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	44.226	42.845	2	0.0073496	36695	160511_QHF_FH_JSI12i_2	51.092	31.305			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58118	4876	54754	353900	477785	477785			1	
WSSGVGGSGGGSSGR	0	Unmodified	1293.5698	0.5697907	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			14.016	13.103	2	0.01994	10300	160511_QHF_FH_JSI9i_3	42.095	32.508			1.2879	1.2788	6.7445	2	0	Median	1.4561	1.2192	NaN	1	0	Median	1.1392	1.3413	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34865000	16248000	18617000	19018000	8233400	10785000	15847000	8015100	7831900	0	0	0	0	0	0	58119	641	54755	353901;353902	477786;477787	477787			2	
WSSLACNIALDAVK	1	Unmodified	1546.7814	0.78136338	1655	P49368	CCT3	T-complex protein 1 subunit gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		6	6							4	2	3	3	79.898	79.258	2;3	3.3031E-07	69852	160511_QHF_FH_JSI9i_2	90.146	75.173			1.2538	1.391	39.791	10	2	Median	2.3693	2.0141	41.859	2	2	Median	1.0711	1.2755	28.463	2	0	Median	0.84289	0.8206	3.0657	3	0	Plateau	1.445	1.464	9.7596	3	0	Median	2096500000	1011600000	1084900000	94734000	33739000	60995000	230900000	110390000	120500000	835130000	461740000	373380000	935750000	405700000	530050000	58120	1655	54756	353903;353904;353905;353906;353907;353908;353909;353910;353911;353912;353913;353914	477788;477789;477790;477791;477792;477793;477794;477795;477796;477797;477798;477799;477800;477801;477802;477803;477804;477805;477806;477807;477808;477809	477799			22	
WSSNGYFYSGK	1	Unmodified	1294.5619	0.56185177	2320	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		56.043	46.847	2	0.025622	25439	160513_QHF_FH_JSI11Kac_6	48.284	39.421			1.6283	1.3876	NaN	1	1	Median	1.6283	1.3876	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8039500	3592400	4447100	8039500	3592400	4447100	0	0	0	0	0	0	0	0	0	58121	2320	54757	353915;353916	477810;477811	477810			2	
WSTAVEFCK	1	Unmodified	1126.5117	0.51173046	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.62	1	4	1						3	1	2	3	3	53.786	50.158	2	0.0012609	43319	160511_QHF_FH_JSI11i_2	69.825	56.788			1.0558	1.1386	33.377	9	2	Median	1.3631	1.1534	NaN	1	1	Median	0.85759	1.0377	10.066	2	1	Median	0.92142	0.95447	55.027	3	0	Median	1.1424	1.2714	26.603	3	0	Median	2156500000	1052300000	1104200000	214650000	75051000	139600000	447450000	228590000	218860000	906870000	492010000	414860000	587550000	256630000	330910000	58122	893	54758	353917;353918;353919;353920;353921;353922;353923;353924;353925	477812;477813;477814;477815;477816;477817;477818;477819;477820;477821;477822	477819			11	
WSTAVEFCKK	2	Acetyl (K)	1296.6173	0.61725816	893	P08174	CD55	Complement decay-accelerating factor	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.262	55.596	2	0.006221	30126	160513_QHF_FH_JSI11Kac_6	76.465	65.314			0.41966	0.41465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41966	0.41465	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	16000000	9733100	6267100	0	0	0	0	0	0	16000000	9733100	6267100	0	0	0	58123	893	54759	353926	477823	477823	632		1	
WSTDDVQINDISLQDYIAVK	1	Unmodified	2322.138	0.13795663	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	101.08	100.97	2;3	1.1229E-160	91679	160511_QHF_FH_JSI11i_1	302.8	289.12			1.0001	0.97416	12.28	9	2	Median	1.1712	0.95411	9.9912	2	0	Median	0.7269	0.85567	18.957	2	0	Median	1.1288	1.1148	8.053	3	2	Median	0.8996	0.94299	1.0642	2	0	Median	3862100000	1986200000	1875900000	407300000	197310000	209990000	1565500000	870560000	694970000	1124400000	526430000	597970000	764890000	391900000	372990000	58124	1594	54760	353927;353928;353929;353930;353931;353932;353933;353934;353935	477824;477825;477826;477827;477828;477829;477830;477831;477832;477833;477834;477835;477836;477837	477824			14	
WSTISENLFATTGYPGK	1	Unmodified	1870.9101	0.91012895	3657	Q8NFH4	NUP37	Nucleoporin Nup37	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	84.399	83.863	2	0.00018895	73786	160511_QHF_FH_JSI11i_2	72.089	62.767			0.92082	0.9732	12.083	6	3	Median	1.0958	0.9689	NaN	1	0	Median	0.95081	1.1207	NaN	1	1	Median	0.81955	0.82533	NaN	1	0	Median	0.89178	0.97753	11.285	3	2	Median	112740000	54682000	58061000	16353000	5315000	11038000	16201000	6862400	9338300	24305000	14067000	10238000	55885000	28438000	27447000	58125	3657	54761	353936;353937;353938;353939;353940;353941;353942;353943	477838;477839;477840;477841;477842;477843;477844;477845;477846;477847	477843			9	
WSTLSADIEETFK	1	Unmodified	1525.73	0.73003931	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	83.521	82.426	2	0.03632	71565	160511_QHF_FH_JSI12i_2	54.471	44.466			0.6681	0.73541	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6681	0.73541	NaN	1	0	Median	21238000	14414000	6823400	0	0	0	0	0	0	0	0	0	21238000	14414000	6823400	58126	2119	54762	353944	477848	477848			0	
WSTLVEDYGMELRK	1	Unmodified	1725.8396	0.83960654	110	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2.8	0.4		1	4									3	2	70.742	70.499	2;3	0.00022367	62752	160511_QHF_FH_JSI11i_3	54.501	47.27			0.694	0.71025	88.992	5	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.694	0.66261	113.2	3	1	Median	1.07	1.0877	60.28	2	2	Median	1484500000	826120000	658360000	0	0	0	0	0	0	602820000	328110000	274710000	881660000	498010000	383650000	58127	110	54763	353945;353946;353947;353948;353949	477849;477850;477851;477852;477853;477854;477855;477856	477851			8	
WSVGHTMGK	1	Unmodified	1001.4753	0.47528537	2830	Q4G0I0	CCSMST1	Protein CCSMST1	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	24.526	23.649	3	0.018999	19138	160511_QHF_FH_JSI9i_3	24.089	14.875			1.5324	0.91193	38.6	3	0	Plateau	0.92217	0.75484	NaN	1	0	Median	0.7801	0.91193	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5324	1.5865	NaN	1	0	Median	231890000	106150000	125740000	61033000	28679000	32354000	53655000	28843000	24812000	0	0	0	117200000	48628000	68574000	58128	2830	54764	353950;353951;353952	477857;477858	477857			2	
WSVHIAMHPQVNIYSVTR	0	Oxidation (M)	2153.084	0.084027761	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	2	2	3	72.443	63.62	3;4	6.1498E-12	34469	160513_QHF_FH_JSI11Kac_6	124.84	114.89			1.1313	1.1101	29.801	10	4	Median	1.1027	0.93676	5.7754	3	2	Median	0.88799	1.0543	1.2287	2	0	Median	2.0488	1.9031	1.8881	2	0	Median	1.2095	1.2796	21.259	3	2	Median	2942700000	1434100000	1508600000	764120000	377780000	386340000	1147400000	646670000	500740000	240510000	79288000	161220000	790650000	330370000	460290000	58129	2751	54765	353953;353954;353955;353956;353957;353958;353959;353960;353961;353962	477859;477860;477861;477862;477863;477864;477865;477866;477867;477868;477869;477870;477871;477872;477873	477859		2126	15	
WSVHIAMHPQVNIYSVTR	0	Unmodified	2137.0891	0.089113139	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	1	3		2	76.785	69.039	2;3;4	3.5629E-43	38021	160513_QHF_FH_JSI10Kac_6	202.63	170.95			1.1479	1.3575	25.632	6	1	Median	1.0567	0.89998	NaN	1	0	Median	1.1253	1.3198	25.481	3	0	Median	NaN	NaN	NaN	0	0	Median	1.387	1.5077	10.859	2	1	Median	2751300000	1368700000	1382500000	398450000	188640000	209810000	2275100000	1144900000	1130200000	0	0	0	77741000	35183000	42559000	58130	2751	54765	353963;353964;353965;353966;353967;353968	477874;477875;477876;477877;477878;477879;477880;477881	477880			8	
WSVHIAMHPQVNIYSVTRK	1	Oxidation (M)	2281.179	0.17899078	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	1	1		By MS/MS			16	0									1		1			66.728	58.854	5	0.017744	32314	160513_QHF_FH_JSI10Kac_6	45.696	36.877			1.446	1.6912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.446	1.6912	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24454000	9540300	14913000	0	0	0	24454000	9540300	14913000	0	0	0	0	0	0	58131	2751	54766	353969	477882	477882		2126	1	
WSYGAGIVLR	0	Unmodified	1120.6029	0.60292873	5645	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	70.399	65.633	2	0.0023303	55471	160511_QHF_FH_JSI10i_3	71.501	55.298			1.1224	1.0136	13.299	8	0	Median	1.1666	0.96683	0.6513	2	0	Median	0.81223	0.95674	7.6492	2	0	Median	1.2326	1.1808	14.562	2	0	Median	1.0981	1.1385	15.922	2	0	Median	822650000	388740000	433910000	158240000	71556000	86680000	307950000	153710000	154240000	188850000	79655000	109190000	167630000	83820000	83806000	58132	5645	54767	353970;353971;353972;353973;353974;353975;353976;353977	477883;477884;477885;477886;477887;477888;477889;477890;477891;477892	477883			10	
WSYTFQTFSFLSR	0	Unmodified	1668.7936	0.79364262	2773	Q16854	DGUOK	Deoxyguanosine kinase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			91.332	84.083	2	4.7287E-06	48589	160513_QHF_FH_JSI10Kac_6	124.42	106.36			1.1369	1.152	1.1325	2	1	Median	1.3136	1.1428	NaN	1	1	Median	0.98403	1.1613	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	265900000	142540000	123370000	64432000	28412000	36020000	201470000	114120000	87347000	0	0	0	0	0	0	58133	2773	54768	353978;353979	477893;477894	477894			2	
WTAFTFLK	1	Unmodified	1012.5382	0.53820321	529	O75448	MED24	Mediator of RNA polymerase II transcription subunit 24	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	84.469	83.806	2	0.015282	72599	160511_QHF_FH_JSI12i_3	50.607	27.678			0.93985	0.94377	5.4291	4	0	Median	1.2015	0.99148	NaN	1	0	Median	0.85795	0.97535	NaN	1	0	Median	0.9641	0.91322	NaN	1	0	Median	0.9162	0.88379	NaN	1	0	Median	125800000	61974000	63825000	32466000	14494000	17972000	23445000	10140000	13304000	25453000	13780000	11672000	44435000	23559000	20876000	58134	529	54769	353980;353981;353982;353983	477895;477896	477896			2	
WTAISALEYGVPVTLIGEAVFAR	0	Unmodified	2462.3209	0.32094679	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.62		3	1						7	3	3	3	2	101.17	95.876	2;3	2.3618E-73	49886	160513_QHF_FH_JSI12Kac_6	221.13	192.83			1.0425	1.0876	13.41	11	2	Median	1.4704	1.2808	6.414	3	1	Plateau	0.88473	1.0497	12.423	3	1	Plateau	1.0425	0.96511	17.424	3	0	Median	1.0405	1.105	5.9516	2	0	Median	2243900000	1062600000	1181300000	451720000	171980000	279740000	996570000	507730000	488840000	175350000	78105000	97243000	620270000	304760000	315510000	58135	1764	54770	353984;353985;353986;353987;353988;353989;353990;353991;353992;353993;353994	477897;477898;477899;477900;477901;477902;477903;477904;477905;477906;477907;477908;477909	477906			13	
WTCCALLAGSEYLK	1	Unmodified	1670.7796	0.77964882	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		80.918	80.23	2;3	0.0053185	70551	160511_QHF_FH_JSI11i_2	53.6	43.369			3.1831	3.7698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3.1831	3.7698	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6705600	1415300	5290300	0	0	0	6705600	1415300	5290300	0	0	0	0	0	0	58136	282	54771	353995;353996	477910;477911	477910			2	
WTDENIDTVALK	1	Unmodified	1403.6933	0.69325988	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By MS/MS			14	0							1				1			70.078	59.437	2	0.025642	31933	160513_QHF_FH_JSI10Kac_4	52.79	35.354			0.46736	0.54999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46736	0.54999	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1891900	1594100	297780	0	0	0	1891900	1594100	297780	0	0	0	0	0	0	58137	2517	54772	353997	477912	477912			1	
WTDLFDNK	1	Unmodified	1037.4818	0.48181054	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	56.168	55.243	2	0.015282	47220	160511_QHF_FH_JSI12i_2	50.607	43.783			1.085	1.2135	3.9034	3	0	Median	NaN	NaN	NaN	0	0	Median	1.085	1.2854	NaN	1	0	Median	1.2171	1.2135	NaN	1	0	Median	1.0578	1.1931	NaN	1	0	Median	151940000	74204000	77733000	0	0	0	50079000	25673000	24406000	51551000	21744000	29807000	50308000	26788000	23520000	58138	1316	54773	353998;353999;354000	477913;477914;477915;477916;477917	477913			5	
WTDQASAEK	1	Unmodified	1034.4669	0.46688876	3653	Q8NFC6	BOD1L1	Biorientation of chromosomes in cell division protein 1-like 1	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	1	0	4									1		1	2	11.924	11.435	2	0.0022106	9249	160511_QHF_FH_JSI12i_1	66.621	56.207			0.86678	0.77823	21.239	2	0	Median	1.0683	0.90434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.70325	0.6697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69137000	38271000	30865000	30997000	17912000	13085000	0	0	0	38139000	20359000	17780000	0	0	0	58139	3653	54774	354001;354002;354003;354004	477918;477919;477920	477918			3	
WTEGLISASK	1	Unmodified	1090.5659	0.56587452	481;118	O75146;O00291	HIP1R;HIP1	Huntingtin-interacting protein 1-related protein;Huntingtin-interacting protein 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	45.59	44.453	2	0.015423	38014	160511_QHF_FH_JSI12i_2	51.445	38.918			1.3952	1.2572	13.636	3	1	Median	1.4132	1.2158	NaN	1	0	Median	1.0229	1.2572	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3952	1.5629	NaN	1	1	Median	186450000	90208000	96239000	44374000	19051000	25323000	72074000	34575000	37499000	0	0	0	69999000	36582000	33417000	58140	481;118	54775	354005;354006;354007	477921;477922	477921			2	
WTETYVR	0	Unmodified	953.46068	0.46068117	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	30.479	29.477	2	0.01409	24652	160511_QHF_FH_JSI11i_2	58.167	16.865			1.002	1.0294	17.105	4	3	Median	1.0955	0.91503	NaN	1	1	Median	0.85316	1.0566	NaN	1	1	Median	1.3286	1.3641	NaN	1	1	Median	0.91642	1.0029	NaN	1	0	Median	935110000	423290000	511820000	33522000	17048000	16474000	284790000	127280000	157520000	391930000	150200000	241740000	224860000	128770000	96090000	58141	1867	54776	354008;354009;354010;354011;354012	477923;477924;477925;477926;477927	477926			5	
WTEYGLTFTEK	1	Unmodified	1373.6503	0.65033243	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.27	6.19	3	9	6					4	4	7	7	5	7	70.71	66.877	2	5.7198E-05	57216	160511_QHF_FH_JSI12i_2	94.309	85.351			1.007	1.0035	45.232	20	5	Median	1.1333	0.95404	21.643	4	2	Median	0.85883	1.0366	60.927	6	1	Median	0.96039	1.0022	25.165	5	0	Median	1.1431	1.176	49.115	5	2	Median	5231100000	2577400000	2653700000	765640000	354600000	411030000	1254800000	689630000	565140000	1624100000	728780000	895350000	1586600000	804420000	782150000	58142	1195	54777	354013;354014;354015;354016;354017;354018;354019;354020;354021;354022;354023;354024;354025;354026;354027;354028;354029;354030;354031;354032;354033;354034;354035;354036;354037;354038	477928;477929;477930;477931;477932;477933;477934;477935;477936;477937;477938;477939;477940;477941;477942;477943;477944;477945;477946;477947;477948;477949;477950;477951;477952;477953;477954;477955;477956;477957;477958;477959;477960;477961;477962;477963;477964;477965;477966	477930			39	
WTFNPAVLTK	1	Unmodified	1175.6339	0.63389451	3389	Q86YT6	MIB1	E3 ubiquitin-protein ligase MIB1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	78.806	78.551	2	0.011324	68121	160511_QHF_FH_JSI12i_3	52.79	40.942			1.1678	1.1872	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1678	1.1872	NaN	1	0	Median	41619000	18409000	23210000	0	0	0	0	0	0	0	0	0	41619000	18409000	23210000	58143	3389	54778	354039	477967	477967			1	
WTGGAVVSSHK	1	Unmodified	1127.5724	0.57235688	4539	Q9BY89	KIAA1671	Uncharacterized protein KIAA1671	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	17.952	17.991	3	0.046645	14521	160511_QHF_FH_JSI12i_3	26.659	19.278			0.96879	0.99732	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96879	0.99732	NaN	1	1	Median	64811000	34977000	29833000	0	0	0	0	0	0	0	0	0	64811000	34977000	29833000	58144	4539	54779	354040	477968	477968			1	
WTGMIIGPPR	0	Unmodified	1126.5957	0.59573486	2715;2398	Q13404;Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	68.094	64.085	2	0.00046778	55228	160511_QHF_FH_JSI12i_3	73.665	64.892			0.95243	0.93393	7.7418	10	2	Median	1.158	0.90999	2.2893	3	2	Plateau	0.78521	0.93882	9.568	3	0	Median	1.0486	0.99349	9.4176	2	0	Median	0.84949	0.88255	10.231	2	0	Median	2860400000	1473300000	1387100000	820080000	388830000	431250000	1126800000	602560000	524270000	415910000	214070000	201840000	497600000	267870000	229740000	58145	2398;2715	54780	354041;354042;354043;354044;354045;354046;354047;354048;354049;354050;354051;354052	477969;477970;477971;477972;477973;477974;477975;477976;477977;477978;477979;477980;477981;477982;477983;477984;477985;477986;477987;477988;477989	477984			21	
WTIDLKSGSGK	2	Acetyl (K)	1232.6401	0.6401021	1747	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	yes	yes	1	0	0	1			By MS/MS	By MS/MS	15	0								2				1	1	73.113	62.347	2	0.015306	33318	160513_QHF_FH_JSI11Kac_5	61.353	49.306			3.8775	3.6998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.8775	3.6998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6755000	1456600	5298500	0	0	0	0	0	0	6755000	1456600	5298500	0	0	0	58146	1747	54781	354053;354054	477990;477991	477990	1766;1767		2	
WTKVHELK	2	Acetyl (K)	1081.592	0.59202969	255	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		38.186	28.705	3	0.012181	15893	160513_QHF_FH_JSI11Kac_6	54.416	40.647			0.12522	0.12358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.12522	0.12358	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12891000	11311000	1579800	0	0	0	0	0	0	12891000	11311000	1579800	0	0	0	58147	255	54782	354055	477992	477992	138		1	
WTLGFCDER	0	Unmodified	1182.5128	0.51279309	677	O95336	PGLS	6-phosphogluconolactonase	yes	yes	0	0	0	0			By MS/MS	By matching	3	0			2									1	1	62.582	62.442	2	0.013878	55496	160511_QHF_FH_JSI11i_3	45.997	40.838			1.1482	1.0805	51.301	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83365	0.75177	NaN	1	0	Median	1.5813	1.553	NaN	1	0	Median	96147000	41238000	54909000	0	0	0	0	0	0	52627000	27586000	25041000	43520000	13652000	29867000	58148	677	54783	354056;354057	477993	477993			1	
WTLLQEQK	1	Unmodified	1044.5604	0.56039521	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.95	4	4						3	3	3	3	5	3	56.176	51.407	2	0.00024038	44131	160511_QHF_FH_JSI11i_2	117.16	70.79		+	0.81853	0.88726	29.283	14	5	Median	0.76719	0.63245	27.107	3	1	Plateau	0.77989	0.94578	15.58	3	1	Plateau	0.92337	0.89468	46.904	5	3	Median	0.85907	0.89301	10.059	3	0	Median	2746800000	1487500000	1259300000	418210000	222370000	195840000	574350000	339240000	235110000	1012400000	507380000	505020000	741820000	418510000	323320000	58149	53;71	54784	354058;354059;354060;354061;354062;354063;354064;354065;354066;354067;354068;354069;354070;354071	477994;477995;477996;477997;477998;477999;478000;478001;478002;478003;478004;478005;478006;478007	478003			14	
WTLLQEQKSAK	2	Acetyl (K)	1372.7351	0.73506511	71;53	CON__P08729;CON__Q3KNV1;P08729	KRT7	Keratin, type II cytoskeletal 7	no	no	1	0	0	1			By MS/MS	By matching	15.3	0.471								2	1			2	1	67.46	57.052	2	0.00011968	30781	160513_QHF_FH_JSI11Kac_6	96.015	78.989		+	0.50205	0.52131	30.939	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42866	0.41888	NaN	1	0	Median	0.588	0.6488	NaN	1	0	Median	30449000	24620000	5829400	0	0	0	0	0	0	26449000	22289000	4160000	3999800	2330400	1669400	58150	53;71	54785	354072;354073;354074	478008;478009;478010	478008	34		3	
WTLLSLVLSQHVK	1	Unmodified	1522.8871	0.88714908	610	O94822	LTN1	E3 ubiquitin-protein ligase listerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.361	84.032	3	3.3097E-09	46683	160513_QHF_FH_JSI9Kac_6	116.51	103.37			0.92414	0.91089	22.754	4	0	Median	1.0482	0.88825	NaN	1	0	Median	0.86289	1.0176	NaN	1	0	Median	0.98975	0.93411	NaN	1	0	Median	0.56866	0.60808	NaN	1	0	Median	782700000	412690000	370010000	222170000	110900000	111270000	360830000	193700000	167130000	156070000	75706000	80366000	43624000	32380000	11244000	58151	610	54786	354075;354076;354077;354078	478011;478012;478013;478014;478015;478016	478013			5	
WTNIPLLVK	1	Unmodified	1082.6488	0.64881629	4193	Q96P70	IPO9	Importin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.667	1	4	4							2	2	3	2	78.965	78.235	2	0.0012639	69656	160511_QHF_FH_JSI10i_2	69.812	55.654			1.1499	1.2299	16.726	9	0	Median	1.2559	1.0382	6.8088	2	0	Median	0.94447	1.1388	19.174	2	0	Median	1.278	1.2299	17.565	3	0	Median	1.3222	1.3973	16.712	2	0	Median	1014300000	488580000	525710000	172330000	78799000	93535000	218270000	119480000	98794000	393830000	185100000	208730000	229850000	105200000	124650000	58152	4193	54787	354079;354080;354081;354082;354083;354084;354085;354086;354087	478017;478018;478019;478020;478021;478022;478023;478024;478025;478026;478027;478028;478029;478030;478031;478032;478033;478034;478035	478032			19	
WTNQLNSLNQAVVSK	1	Unmodified	1700.8846	0.8845829	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							1	3	3	5	61.123	60.47	2;3	1.6358E-14	53596	160511_QHF_FH_JSI11i_3	156.08	133.21			1.1278	1.1617	69.369	11	4	Median	1.3147	1.1563	NaN	1	0	Median	0.96795	1.172	8.4074	3	0	Median	0.79219	0.94645	23.188	3	1	Plateau	1.3412	1.4254	101.04	4	3	Median	1635900000	581830000	1054100000	129480000	58470000	71009000	240320000	122710000	117600000	428770000	200710000	228060000	837340000	199940000	637400000	58153	1943	54788	354088;354089;354090;354091;354092;354093;354094;354095;354096;354097;354098;354099	478036;478037;478038;478039;478040;478041;478042;478043;478044;478045;478046;478047;478048;478049;478050;478051;478052;478053;478054;478055;478056	478036			21	
WTPIEYFNNK	1	Unmodified	1310.6295	0.62953741	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	76.363	75.591	2	1.1359E-09	67454	160511_QHF_FH_JSI11i_3	135.83	104.76			1.0252	0.99332	26.626	6	2	Median	1.2551	1.0296	38.539	2	0	Median	0.9941	1.185	34.795	2	2	Median	0.88122	0.83107	NaN	1	0	Median	1.0589	1.0649	NaN	1	0	Median	859760000	416630000	443130000	97069000	42677000	54392000	154390000	76295000	78092000	277080000	135970000	141110000	331230000	161680000	169540000	58154	2332	54789	354100;354101;354102;354103;354104;354105	478057;478058;478059;478060;478061;478062;478063;478064;478065	478059			9	
WTPVGPAPSTSQSQK	1	Unmodified	1569.7787	0.77872084	5294	Q9UHB7	AFF4	AF4/FMR2 family member 4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	38.59	38.53	2	0.0012496	33840	160511_QHF_FH_JSI11i_3	60.49	39.619			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58155	5294	54790	354106;354107;354108	478066;478067;478068	478066			3	
WTQYLFIK	1	Unmodified	1097.591	0.59096706	2610	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.406	68.999	2	0.0096472	36151	160513_QHF_FH_JSI12Kac_6	68.422	58.435			1.0817	1.093	14.333	4	0	Median	1.4352	1.238	NaN	1	0	Median	0.80848	0.96365	NaN	1	0	Median	1.2883	1.2361	NaN	1	0	Median	0.90818	0.96652	NaN	1	0	Median	514680000	272150000	242530000	112500000	56107000	56388000	209900000	121290000	88610000	109500000	47067000	62437000	82781000	47690000	35090000	58156	2610	54791	354109;354110;354111;354112	478069;478070;478071;478072;478073;478074;478075;478076	478074			8	
WTSQDSLLGMEFSGR	0	Unmodified	1712.7828	0.78281994	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.24		10	6						1	4	3	5	5	81.282	80.118	2;3	1.4878E-06	69628	160511_QHF_FH_JSI12i_2	152.14	137.17			1.0221	1.122	14.159	17	6	Median	1.3628	1.1563	11.134	4	2	Median	0.94032	1.1625	8.3237	3	0	Median	0.98914	0.97148	10.378	5	2	Median	0.93014	1.0405	15.349	5	2	Median	3510300000	1755700000	1754600000	375260000	135520000	239740000	405470000	205770000	199700000	1555800000	823130000	732660000	1173800000	591260000	582490000	58157	1650	54792	354113;354114;354115;354116;354117;354118;354119;354120;354121;354122;354123;354124;354125;354126;354127;354128;354129	478077;478078;478079;478080;478081;478082;478083;478084;478085;478086;478087;478088;478089;478090;478091;478092;478093;478094;478095;478096;478097;478098;478099;478100;478101;478102;478103;478104;478105;478106	478084			30	
WTSQDSLLGMEFSGR	0	Oxidation (M)	1728.7777	0.77773456	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	69.915	69.317	2	0.00054059	61688	160511_QHF_FH_JSI11i_3	110.38	100.89			0.89277	1.0004	11.494	5	3	Median	NaN	NaN	NaN	0	0	Median	0.83234	1.0004	NaN	1	0	Median	1.0129	0.97269	21.683	2	2	Median	0.96696	1.0072	6.7234	2	1	Median	263480000	126000000	137480000	0	0	0	42860000	16153000	26708000	104840000	51623000	53222000	115780000	58226000	57550000	58158	1650	54792	354130;354131;354132;354133;354134	478107;478108;478109;478110;478111	478107		1326	5	
WTSQHSNTQTLGK	1	Unmodified	1486.7165	0.71645494	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	2	3	2	15.103	14.678	2;3	1.9708E-07	11700	160511_QHF_FH_JSI9i_3	107.65	93.616			0.94169	0.96095	25.416	9	3	Median	1.3372	1.0872	10.545	2	0	Median	0.98477	1.1384	8.8708	2	0	Median	0.85839	0.80637	14.124	3	2	Median	0.7233	0.73602	37.712	2	1	Median	1519100000	726620000	792510000	233580000	95507000	138070000	312880000	134870000	178010000	827660000	416390000	411270000	145010000	79855000	65157000	58159	3132	54793	354135;354136;354137;354138;354139;354140;354141;354142;354143	478112;478113;478114;478115;478116;478117;478118;478119;478120;478121;478122;478123;478124;478125;478126;478127	478123			15	
WTTEEQLLAVQAIRK	1	Unmodified	1784.9785	0.97848328	5371	Q9UKL0	RCOR1	REST corepressor 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.235	69.936	3	0.00045898	60547	160511_QHF_FH_JSI12i_3	71.344	59.652			0.37249	0.38105	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37249	0.38105	NaN	1	1	Median	199220000	144040000	55179000	0	0	0	0	0	0	0	0	0	199220000	144040000	55179000	58160	5371	54794	354144	478128	478128			1	
WTTEQQQR	0	Unmodified	1075.5047	0.50467125	2611	Q15041	ARL6IP1	ADP-ribosylation factor-like protein 6-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.22	5	4	2				2	1		4	4	3	3	10.951	9.3643	2	6.1051E-05	7288	160511_QHF_FH_JSI11i_2	134.44	112.31			0.93448	1.0231	37.06	12	3	Median	1.2394	1.0276	61.448	3	1	Plateau	0.87482	1.0187	25.471	3	1	Median	0.8668	0.87073	18.034	3	1	Median	0.85247	0.88758	12.531	3	0	Plateau	2001300000	1037100000	964120000	582980000	285110000	297870000	773740000	413430000	360310000	324070000	175240000	148840000	320460000	163360000	157100000	58161	2611	54795	354145;354146;354147;354148;354149;354150;354151;354152;354153;354154;354155;354156;354157;354158	478129;478130;478131;478132;478133;478134;478135;478136;478137;478138;478139;478140;478141;478142;478143;478144;478145;478146;478147	478142			19	
WTTLNSLQLHGLQLR	0	Unmodified	1778.9792	0.97915198	2282	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	12.3	5.87			2						5	2	3	1	1	80.917	75.021	2;3	2.3617E-07	40505	160513_QHF_FH_JSI10Kac_6	107.98	84.838			1.1425	1.2911	8.4107	7	1	Median	1.5029	1.2578	3.6875	2	0	Median	1.1268	1.0719	12.662	3	1	Plateau	1.4335	1.3412	NaN	1	0	Median	1.1305	1.1753	NaN	1	0	Median	2216700000	1155000000	1061700000	446180000	205650000	240520000	1475200000	824050000	651160000	181420000	72124000	109300000	113890000	53179000	60712000	58162	2282	54796	354159;354160;354161;354162;354163;354164;354165	478148;478149;478150;478151;478152;478153;478154	478153			7	
WTTTALGLLTIPIIIHPIDR	0	Unmodified	2243.3042	0.30417452	5267	Q9UDX5	MTFP1	Mitochondrial fission process protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		97.638	88.379	3	0.00011883	50496	160513_QHF_FH_JSI11Kac_6	105.32	86.288			1.1449	1.0434	34.703	2	2	Median	0.9326	0.81639	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4056	1.3336	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	566420000	274550000	291870000	335530000	190520000	145010000	0	0	0	230890000	84029000	146860000	0	0	0	58163	5267	54797	354166;354167	478155;478156	478155			2	
WTVEHIVYK	1	Unmodified	1173.6182	0.61824444	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		48.234	47.713	3	0.0071979	41119	160511_QHF_FH_JSI11i_2	40.994	22.682			1.1335	1.1554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1335	1.1554	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	27786000	13712000	14074000	0	0	0	0	0	0	27786000	13712000	14074000	0	0	0	58164	1499	54798	354168	478157;478158	478158			2	
WTYIEFYSR	0	Unmodified	1263.5924	0.59242362	4932	Q9NQX4	MYO5C	Unconventional myosin-Vc	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	78.111	68.731	2	0.010995	36220	160513_QHF_FH_JSI12Kac_6	56.916	51.434			1.0702	1.1041	13.904	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2564	1.2182	NaN	1	0	Median	0.91156	1.0008	NaN	1	0	Median	27731000	11056000	16675000	0	0	0	0	0	0	14452000	5190400	9262000	13278000	5865300	7413100	58165	4932	54799	354169;354170;354171;354172	478159;478160;478161;478162;478163	478162			5	
WVAAVGK	1	Unmodified	729.41736	0.41735979	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		23.68	23.335	2	0.018161	19421	160511_QHF_FH_JSI11i_2	54.525	37.598			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58166	4773	54800	354173	478164	478164			1	
WVAIQSVSAWPEK	1	Unmodified	1499.7773	0.77726428	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.01		6	5						4	4	5	3	3	76.749	73.614	2	6.1115E-13	66628	160511_QHF_FH_JSI10i_2	128.01	89.232			0.90324	0.94825	20.81	13	5	Median	0.96025	0.82296	25.346	4	3	Median	0.80016	0.94183	27.804	3	2	Median	1.1653	1.0803	13.228	3	0	Median	1.1327	1.194	14.122	3	0	Plateau	784200000	374650000	409550000	154760000	66442000	88316000	139240000	73898000	65338000	272210000	123320000	148890000	217990000	110990000	107000000	58167	4160	54801	354174;354175;354176;354177;354178;354179;354180;354181;354182;354183;354184;354185;354186;354187;354188	478165;478166;478167;478168;478169;478170;478171;478172;478173;478174;478175;478176;478177;478178;478179;478180;478181;478182;478183;478184;478185;478186;478187	478179			23	
WVAVVVPSGQEQR	0	Unmodified	1453.7678	0.76776223	788	P01891	HLA-A	HLA class I histocompatibility antigen, A-68 alpha chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.67	6.51	4	8	4				5	8	4	6	10	9	8	58.961	53.353	2;3	1.4117E-07	46054	160511_QHF_FH_JSI11i_2	139.43	134.37			1.0044	1.0457	16.365	32	4	Median	1.2404	1.0444	8.9062	6	1	Median	0.87024	1.0223	15.52	9	0	Median	1.0999	1.0752	18.066	9	1	Median	0.91904	1.0184	21.385	8	2	Median	3519100000	1680500000	1838500000	602220000	289890000	312330000	908330000	444710000	463630000	1248900000	611050000	637870000	759590000	334880000	424720000	58168	788	54802	354189;354190;354191;354192;354193;354194;354195;354196;354197;354198;354199;354200;354201;354202;354203;354204;354205;354206;354207;354208;354209;354210;354211;354212;354213;354214;354215;354216;354217;354218;354219;354220;354221	478188;478189;478190;478191;478192;478193;478194;478195;478196;478197;478198;478199;478200;478201;478202;478203;478204;478205;478206;478207;478208;478209;478210;478211;478212;478213;478214;478215;478216;478217;478218;478219;478220;478221;478222;478223;478224;478225;478226;478227;478228;478229;478230;478231;478232;478233;478234;478235;478236;478237;478238;478239;478240;478241;478242;478243;478244	478218			55	
WVCSSLR	0	Unmodified	906.43817	0.43817159	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	26.761	26.084	2	0.027475	22320	160511_QHF_FH_JSI11i_3	56.011	44.106			0.70388	0.70478	58.09	4	1	Median	1.0865	0.86626	NaN	1	0	Median	0.88839	1.0294	NaN	1	0	Median	0.2973	0.279	NaN	1	1	Median	0.55769	0.5734	NaN	1	0	Median	1109700000	670680000	439060000	162190000	77832000	84359000	348050000	189730000	158320000	226550000	163400000	63154000	372960000	239720000	133230000	58169	1650	54803	354222;354223;354224;354225	478245;478246;478247;478248	478245			4	
WVDLTMDDIRR	0	Unmodified	1418.6976	0.69763375	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	60.729	60.592	3	0.0038502	53832	160511_QHF_FH_JSI11i_3	36.284	33.156			1.0538	1.0496	8.8694	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0389	0.9858	NaN	1	0	Median	1.0688	1.1175	NaN	1	0	Median	126990000	59244000	67745000	0	0	0	0	0	0	56734000	31869000	24865000	70256000	27376000	42880000	58170	2145	54804	354226;354227	478249	478249			1	
WVDWTVSEPR	0	Unmodified	1273.6091	0.60913632	3440	Q8IXH7	NELFCD	Negative elongation factor C/D	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	2	0		3									1	1	1	60.963	60.068	2	0.059725	51523	160511_QHF_FH_JSI12i_2	46.158	34.565			1.2023	1.4669	6.8296	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.1002	1.3538	NaN	1	0	Median	1.4031	1.495	NaN	1	0	Median	1.2023	1.3116	NaN	1	0	Median	92438000	42827000	49611000	0	0	0	31254000	13684000	17570000	38552000	19963000	18589000	22632000	9180200	13451000	58171	3440	54805	354228;354229;354230	478250	478250			0	
WVEISNEVRK	1	Unmodified	1258.667	0.66698555	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								1	2	4	33.438	33.248	2;3	4.0418E-05	27999	160511_QHF_FH_JSI12i_3	93.325	82.112			1.2455	1.173	55.56	7	5	Median	NaN	NaN	NaN	0	0	Median	1.4313	1.721	NaN	1	1	Median	1.1983	1.1238	6.0561	2	1	Median	1.0447	1.0601	75.715	4	3	Median	685590000	347060000	338530000	0	0	0	52743000	23138000	29605000	237280000	125040000	112240000	395570000	198880000	196690000	58172	1117	54806	354231;354232;354233;354234;354235;354236;354237	478251;478252;478253;478254;478255;478256;478257	478255			7	
WVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIK	1	Unmodified	4451.3208	0.32077592	5502	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			98.728	93.007	4	4.7294E-55	54465	160513_QHF_FH_JSI10Kac_6	149.48	142.44			0.64336	0.73619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.64336	0.73619	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112150000	66940000	45214000	0	0	0	112150000	66940000	45214000	0	0	0	0	0	0	58173	5502	54807	354238	478258	478258			1	
WVGGPEIELIAIATGGR	0	Unmodified	1737.9414	0.94136949	1630	P48643	CCT5	T-complex protein 1 subunit epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		5							5	2	2	3	3	98.771	94.413	2;3	6.454E-11	51357	160513_QHF_FH_JSI10Kac_6	127.79	106.42			1.0259	0.56039	41.612	10	4	Linear	1.5911	1.3925	46.667	2	1	Median	0.88488	1.0797	21.938	2	0	Median	0.46939	0.47253	59.36	3	1	Plateau	0.96333	1.0138	37.679	3	2	Plateau	5332700000	3287300000	2045400000	426900000	182440000	244460000	621150000	354650000	266490000	3142300000	2169700000	972660000	1142300000	580530000	561760000	58174	1630	54808	354239;354240;354241;354242;354243;354244;354245;354246;354247;354248	478259;478260;478261;478262;478263;478264;478265;478266;478267;478268;478269	478269			11	
WVGILEGLQSILHK	1	Unmodified	1591.9086	0.9086128	5677	Q9Y5S2	CDC42BPB	Serine/threonine-protein kinase MRCK beta	yes	yes	0	0	0	0		By MS/MS		By MS/MS	9.5	6.5			1						1		1		1	98.789	93.993	3	0.00063492	46796	160513_QHF_FH_JSI12Kac_6	73.037	54.204			1.1385	1.2852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1385	1.2852	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50118000	34710000	15408000	0	0	0	31490000	16082000	15408000	0	0	0	18628000	18628000	0	58175	5677	54809	354249;354250	478270;478271	478271			2	
WVGLSYWHCSWAK	1	Unmodified	1678.7715	0.77146739	2318	Q12873	CHD3	Chromodomain-helicase-DNA-binding protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.228	71.162	3	0.00042296	38865	160513_QHF_FH_JSI10Kac_6	67.93	62.502			0.97811	1.1567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97811	1.1567	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	202710000	104490000	98220000	0	0	0	202710000	104490000	98220000	0	0	0	0	0	0	58176	2318	54810	354251	478272;478273	478272			2	
WVGTIHGAAGTVYEDLR	0	Unmodified	1843.9217	0.92169668	164	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	7.33	6.13			2						1	1		1	1	64.872	61.892	3	4.9303E-05	53600	160511_QHF_FH_JSI12i_3	70.942	59.027			1.5814	1.3642	19.105	3	1	Median	1.5814	1.3642	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6902	1.5499	NaN	1	0	Median	1.0574	1.0644	NaN	1	0	Median	175500000	79143000	96362000	9037600	3602000	5435600	0	0	0	71728000	25981000	45747000	94738000	49559000	45179000	58177	164	54811	354252;354253;354254	478274;478275;478276;478277	478276			4	
WVGVILDEAK	1	Unmodified	1128.6179	0.61791009	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	66.37	65.474	2	0.014736	56276	160511_QHF_FH_JSI12i_2	52.278	40.915			0.38422	0.37744	80.572	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.33924	0.41367	NaN	1	1	Median	0.38422	0.37744	NaN	1	1	Median	1.4475	1.5916	NaN	1	1	Median	194330000	136240000	58094000	0	0	0	54747000	38936000	15810000	81197000	62039000	19159000	58391000	35266000	23125000	58178	2516	54812	354255;354256;354257	478278;478279;478280	478278			3	
WVGVLSELHK	1	Unmodified	1166.6448	0.64479354	2983	Q5VT25	CDC42BPA	Serine/threonine-protein kinase MRCK alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	3	0			4							1		1	2	59.008	58.497	3	3.501E-05	50320	160511_QHF_FH_JSI12i_3	95.573	85.886			1.2713	1.1886	145.88	4	4	Median	0.46339	0.38439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	6.5134	6.1523	NaN	1	1	Median	1.1585	1.1886	157.28	2	2	Median	115340000	56479000	58858000	17263000	11721000	5542000	0	0	0	17250000	1852300	15398000	80824000	42906000	37918000	58179	2983	54813	354258;354259;354260;354261	478281;478282;478283;478284	478284			4	
WVHAEMVNK	1	Unmodified	1112.5437	0.54369929	1579	P46063	RECQL	ATP-dependent DNA helicase Q1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			5								1	2	2	23.11	22.851	2;3	0.00017868	18596	160511_QHF_FH_JSI12i_3	86.833	77.245			0.96633	1.0285	34.107	5	1	Median	NaN	NaN	NaN	0	0	Median	0.96633	1.1171	NaN	1	0	Median	1.185	1.1162	11.584	2	0	Median	0.63134	0.63496	26.382	2	1	Median	1170200000	551080000	619100000	0	0	0	70644000	31701000	38943000	537390000	227750000	309640000	562150000	291630000	270520000	58180	1579	54814	354262;354263;354264;354265;354266	478285;478286;478287;478288;478289;478290	478288			5	
WVINPSGGLISK	1	Unmodified	1269.7081	0.70812208	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.71	0.452		2	5							3	2	1	1	72.408	71.507	2	0.00013674	62023	160511_QHF_FH_JSI12i_3	84.507	74.554			1.07	0.99979	35.266	7	3	Median	1.2113	0.99979	48.913	3	2	Median	0.61155	0.72499	13.416	2	1	Median	1.07	1.0171	NaN	1	0	Median	1.092	1.1236	NaN	1	0	Median	555160000	278220000	276940000	116980000	60137000	56843000	101800000	64987000	36808000	129160000	64112000	65052000	207220000	88984000	118230000	58181	1207	54815	354267;354268;354269;354270;354271;354272;354273	478291;478292;478293;478294;478295;478296;478297;478298;478299	478299			9	
WVIYNDQK	1	Unmodified	1064.5291	0.52909508	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	42.646	41.679	2	0.0021479	35720	160511_QHF_FH_JSI11i_2	91.9	67.268			1.5706	1.605	23.158	5	3	Median	1.6941	1.4316	NaN	1	1	Median	1.3119	1.6021	44.841	2	1	Median	1.5706	1.605	NaN	1	0	Median	1.5241	1.6704	NaN	1	1	Median	1220500000	499860000	720630000	215470000	74389000	141080000	471860000	193920000	277940000	287980000	147280000	140700000	245190000	84271000	160920000	58182	1573	54816	354274;354275;354276;354277;354278	478300;478301;478302;478303;478304	478302			5	
WVKHWVK	2	Acetyl (K)	1023.5654	0.56542101	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	47.869	38.202	3	0.021167	20760	160513_QHF_FH_JSI11Kac_6	44.447	19.524			0.44245	0.45752	63.943	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30698	0.2911	NaN	1	0	Median	0.63769	0.71908	NaN	1	0	Median	20601000	15175000	5426300	0	0	0	0	0	0	17807000	13587000	4220500	2794000	1588300	1205700	58183	1600	54817	354279;354280	478305;478306;478307	478305	1628		3	
WVLIGSPLVGQPK	1	Unmodified	1392.8129	0.8129215	1873	P56199	ITGA1	Integrin alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	2	2	4	2	86.272	83.899	2	5.3522E-05	75862	160511_QHF_FH_JSI11i_2	110.14	95.469			1.107	1.101	20.696	10	2	Median	1.3283	1.1488	19.102	2	0	Median	0.78949	0.94876	25.579	2	0	Median	1.107	1.241	10.892	4	2	Linear	1.1617	1.198	43.147	2	0	Median	209450000	93470000	115980000	28229000	11914000	16316000	30022000	16540000	13482000	100870000	44845000	56021000	50332000	20170000	30162000	58184	1873	54818	354281;354282;354283;354284;354285;354286;354287;354288;354289;354290	478308;478309;478310;478311;478312;478313;478314;478315;478316;478317;478318;478319	478317			10	
WVLMSNSTVDEVIK	1	Unmodified	1619.8229	0.82289384	5821				yes	yes	0	0	0	0		By matching		By MS/MS	2.67	0.471		1	2								1		2	46.149	45.666	3	0.032025	38987	160511_QHF_FH_JSI12i_3	26.124	6.3838	+		1.0409	1.049	1.4409	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.8375	1.0232	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0409	1.049	0	2	0	Median	204040000	108700000	95339000	0	0	0	39596000	21433000	18163000	0	0	0	164450000	87270000	77176000	58185	5821	54819	354291;354292;354293	478320	478320			1	
WVLTGTPIQNSLK	1	Unmodified	1455.8086	0.80856441	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	3	3	2	75.648	74.828	2	6.618E-17	66788	160511_QHF_FH_JSI11i_3	138.25	117.38			0.9631	0.94662	15.931	8	2	Median	1.1145	0.93343	13.081	2	1	Median	0.79854	0.92128	0.80364	2	0	Median	1.0444	1.0324	9.2352	2	1	Median	1.0584	1.1072	32.618	2	0	Median	541220000	244600000	296620000	85587000	34252000	51335000	82858000	48757000	34102000	199290000	84341000	114940000	173490000	77253000	96241000	58186	2540	54820	354294;354295;354296;354297;354298;354299;354300;354301;354302;354303;354304	478321;478322;478323;478324;478325;478326;478327;478328;478329;478330;478331;478332;478333;478334;478335;478336	478322			16	
WVNEAQEAASSDNIMVQYHALGLLYHVR	0	Unmodified	3213.5666	0.56656658	5708	Q9Y678	COPG1	Coatomer subunit gamma-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	85.447	77.91	4	5.0284E-34	43960	160513_QHF_FH_JSI10Kac_6	137.62	131.96			0.82522	0.93603	10.034	2	0	Median	NaN	NaN	NaN	0	0	Median	0.72942	0.87192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93361	1.0049	NaN	1	0	Median	825140000	468120000	357020000	0	0	0	677550000	388710000	288840000	0	0	0	147590000	79418000	68176000	58187	5708	54821	354305;354306	478337;478338	478338			2	
WVNKHLIK	2	Acetyl (K)	1078.6287	0.62874955	2636	Q15149	PLEC	Plectin	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		46.62	36.945	3	0.035906	20080	160513_QHF_FH_JSI11Kac_6	39.022	31.376			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8643100	8643100	0	0	0	0	0	0	0	8643100	8643100	0	0	0	0	58188	2636	54822	354307	478339;478340	478339			2	
WVNPHKL	1	Unmodified	892.49192	0.49192172	1000	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.03	6.01			20						9	10	8	8	3	23.495	20.372	2;3	0.0052227	16377	160511_QHF_FH_JSI11i_3	52.683	52.683			0.86057	0.75158	103.72	27	5	Median	1.1239	0.95953	113.42	8	2	Median	0.53618	0.63036	67.917	8	2	Median	1.0237	1.009	125.8	8	1	Median	0.92883	0.96475	92.506	3	0	Median	9471800000	4393700000	5078200000	3123400000	1138100000	1985300000	2152300000	1230000000	922340000	2314000000	915910000	1398100000	1882200000	1109700000	772470000	58189	1000	54823	354308;354309;354310;354311;354312;354313;354314;354315;354316;354317;354318;354319;354320;354321;354322;354323;354324;354325;354326;354327;354328;354329;354330;354331;354332;354333;354334;354335;354336	478341;478342;478343;478344;478345;478346;478347;478348;478349;478350;478351;478352;478353;478354;478355;478356;478357;478358;478359;478360;478361;478362;478363;478364;478365;478366;478367;478368;478369;478370;478371;478372;478373;478374;478375	478343			35	
WVPAGGSTGFSR	0	Unmodified	1220.5938	0.5938206	3570	Q8N8S7	ENAH	Protein enabled homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			45.737	44.154	2	0.00099221	36128	160511_QHF_FH_JSI9i_3	66.19	48.677			1.0471	1.0212	0.28682	2	0	Median	1.2528	1.0191	NaN	1	0	Median	0.87517	1.0233	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101740000	56379000	45363000	56793000	28432000	28362000	44949000	27948000	17002000	0	0	0	0	0	0	58190	3570	54824	354337;354338	478376;478377;478378;478379	478379			4	
WVPEITHHCPK	1	Unmodified	1402.6816	0.68158975	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							1	1	2	5	34.476	34.225	3;4	7.6633E-05	28582	160511_QHF_FH_JSI12i_3	65.395	60.101			1.0821	1.0493	34.284	8	1	Median	NaN	NaN	NaN	0	0	Median	1.9493	2.2706	NaN	1	1	Median	1.0723	1.001	8.7001	2	0	Median	1.0327	1.0342	29.262	5	0	Median	916190000	382040000	534160000	0	0	0	19539000	7791800	11747000	205310000	105720000	99592000	691340000	268530000	422820000	58191	1924	54825	354339;354340;354341;354342;354343;354344;354345;354346;354347	478380;478381;478382;478383;478384;478385;478386;478387	478385			5	
WVPENSEIVWSIK	1	Unmodified	1585.814	0.81404372	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		86.136	85.553	2	0.055415	75274	160511_QHF_FH_JSI11i_2	43.502	33.953			1.2661	1.2636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2661	1.2636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52568000	13815000	38753000	0	0	0	0	0	0	52568000	13815000	38753000	0	0	0	58192	4524	54826	354348	478388	478388			1	
WVPEQSSAVVLAVLHFPFIPIQVK	1	Unmodified	2703.5152	0.51522993	4368	Q9BRB3	PIGQ	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	99.596	91.49	3	3.2697E-27	52175	160513_QHF_FH_JSI9Kac_6	142.42	126.52			1.1595	1.2259	11.302	3	0	Median	1.1917	1.0162	NaN	1	0	Median	1.037	1.245	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1595	1.2259	NaN	1	0	Median	290540000	144590000	145950000	90928000	44455000	46473000	152720000	78925000	73794000	0	0	0	46897000	21212000	25685000	58193	4368	54827	354349;354350;354351	478389;478390;478391;478392;478393;478394	478390			6	
WVPLQIDMKPEVPR	1	Unmodified	1706.9178	0.91779728	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	2	1	81.345	80.631	2;3	9.5258E-05	66535	160511_QHF_FH_JSI9i_3	83.729	79.486			0.56507	0.59026	34.614	4	1	Median	1.1282	0.90493	NaN	1	0	Median	0.66293	0.74315	NaN	1	0	Median	0.48166	0.46883	NaN	1	0	Median	0.4442	0.44767	NaN	1	1	Median	1001200000	648560000	352620000	125770000	53593000	72174000	138280000	81110000	57172000	573660000	397460000	176200000	163480000	116400000	47075000	58194	3132	54828	354352;354353;354354;354355;354356	478395;478396;478397;478398;478399;478400;478401	478400			7	
WVPPAASGGSR	0	Unmodified	1083.5461	0.54614213	3975	Q96B01	RAD51AP1	RAD51-associated protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			29.616	28.273	2	0.051078	23531	160511_QHF_FH_JSI10i_3	35.511	27.092			0.68926	0.78573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68926	0.78573	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36278000	20708000	15571000	0	0	0	36278000	20708000	15571000	0	0	0	0	0	0	58195	3975	54829	354357	478402	478402			1	
WVPPLIGELYGLR	0	Unmodified	1511.85	0.85003529	5180	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	3	0			6							2	2	1	1	102.34	102.24	2;3	3.2432E-05	89067	160511_QHF_FH_JSI12i_3	84.821	75.533			1.1043	0.98543	15.474	6	0	Median	1.0789	0.91402	0.8017	2	0	Median	0.92515	1.0702	28.955	2	0	Median	1.1563	1.0564	NaN	1	0	Median	1.0929	1.1017	NaN	1	0	Median	554370000	288180000	266180000	36648000	19162000	17486000	251070000	137960000	113110000	70581000	34501000	36081000	196070000	96562000	99508000	58196	5180	54830	354358;354359;354360;354361;354362;354363	478403;478404;478405	478405			3	
WVPQMGDHTEVLKGIQK	2	Acetyl (K)	2007.0248	0.024781548	1448	P35914	HMGCL	Hydroxymethylglutaryl-CoA lyase, mitochondrial	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By matching	16	0									3	1		1	1	76.171	67.052	3	1.8374E-05	36546	160513_QHF_FH_JSI11Kac_6	94.569	84.23			0.90245	0.87645	27.889	3	0	Median	0.7586	0.66147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.90245	0.87645	NaN	1	0	Median	1.1056	1.1554	NaN	1	0	Median	106770000	58013000	48754000	28035000	14018000	14017000	0	0	0	45448000	27329000	18118000	33284000	16666000	16618000	58197	1448	54831	354364;354365;354366	478406;478407;478408	478407	1430		3	
WVPSLNEVPLHYLK	1	Unmodified	1693.9192	0.91917749	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	92.218	91.71	3	2.3483E-05	79088	160511_QHF_FH_JSI12i_3	109.84	104.63			1.0063	1.037	22.144	5	1	Median	1.5077	1.26	NaN	1	1	Median	0.65573	0.76799	7.0771	2	0	Median	1.1257	1.0695	NaN	1	0	Median	1.0063	1.037	NaN	1	0	Median	514150000	266460000	247690000	14247000	4658700	9588400	55481000	35204000	20277000	126210000	63695000	62514000	318210000	162900000	155320000	58198	4416	54832	354367;354368;354369;354370;354371	478409;478410;478411;478412;478413;478414;478415;478416;478417;478418;478419;478420;478421	478421			13	
WVPSLNEVPLHYLKPNSFVK	2	Acetyl (K)	2408.2893	0.28925273	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		92.454	83.082	3	4.0529E-05	46713	160513_QHF_FH_JSI11Kac_6	74.207	51.772			0.78389	0.76774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78389	0.76774	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	88460000	53934000	34526000	0	0	0	0	0	0	88460000	53934000	34526000	0	0	0	58199	4416	54833	354372	478422;478423	478422	3157		2	
WVPVVDPQEEER	0	Unmodified	1481.7151	0.71505795	3773	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	yes	yes	0	0	0	0			By MS/MS		1.5	0.5	1	1										2		59.747	59.281	2	0.057134	53858	160511_QHF_FH_JSI11i_1	42.718	26.464			0.35122	0.35113	64.623	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.35122	0.35113	64.623	2	2	Median	NaN	NaN	NaN	0	0	Median	172740000	141100000	31647000	0	0	0	0	0	0	172740000	141100000	31647000	0	0	0	58200	3773	54834	354373;354374	478424;478425	478424			2	
WVSELSYVEEK	1	Unmodified	1367.6609	0.66089712	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	60.807	59.484	2	0.0025392	51048	160511_QHF_FH_JSI12i_2	72.006	62.052			1.6566	1.7974	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6566	1.7974	NaN	1	1	Median	24840000	9483700	15356000	0	0	0	0	0	0	0	0	0	24840000	9483700	15356000	58201	2637	54835	354375	478426	478426			1	
WVTFLLK	1	Unmodified	905.53747	0.53747492	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.62	4.88		5	6						2	3	4	3	3	81.558	79.724	2	0.022676	72016	160511_QHF_FH_JSI11i_3	59.205	59.205			0.6224	0.70384	87.841	13	12	Median	1.112	0.97144	110.27	3	2	Median	1.0931	1.3096	98.691	4	4	Median	0.38729	0.36016	90.346	3	3	Plateau	0.46167	0.47114	98.064	3	3	Median	1420800000	724950000	695840000	533380000	268450000	264930000	531660000	274670000	256990000	131130000	71153000	59976000	224620000	110680000	113940000	58202	5161	54836	354376;354377;354378;354379;354380;354381;354382;354383;354384;354385;354386;354387;354388	478427;478428;478429;478430;478431;478432;478433;478434;478435;478436;478437;478438;478439;478440;478441;478442;478443;478444;478445	478428			19	
WVTHLVK	1	Unmodified	881.51232	0.51232281	2421	Q13464	ROCK1	Rho-associated protein kinase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.853	27.831	3	0.030994	23336	160511_QHF_FH_JSI12i_3	33.797	24.28			0.39304	0.38526	53.468	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60597	0.56227	NaN	1	1	Median	0.25493	0.26397	NaN	1	1	Median	39994000	27934000	12060000	0	0	0	0	0	0	15807000	9175400	6631400	24187000	18758000	5428700	58203	2421	54837	354389;354390	478446;478447	478447			2	
WVTLLQDWHVILPR	0	Unmodified	1774.9883	0.98826011	20	A5PLL7	TMEM189	Transmembrane protein 189	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	93.335	84.766	3	6.8338E-06	47516	160513_QHF_FH_JSI11Kac_6	101.89	83.747			0.99528	1.1771	43.398	5	3	Median	1.4109	1.185	NaN	1	1	Median	0.99528	1.1771	NaN	1	0	Median	1.3705	1.2933	NaN	1	0	Median	0.6115	0.64868	52.187	2	2	Median	707400000	379330000	328070000	170600000	71724000	98872000	222640000	122270000	100370000	134880000	66404000	68472000	179290000	118930000	60356000	58204	20	54838	354391;354392;354393;354394;354395	478448;478449;478450;478451;478452	478448			5	
WVTTASLLDYDTVAGADK	1	Unmodified	1924.9418	0.941823	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.479	5	9								3	4	4	3	86.491	85.966	2;3	1.8375E-11	78073	160511_QHF_FH_JSI10i_1	147.35	133.67			0.99866	1.0027	33.733	14	5	Median	1.0013	0.84616	14.192	3	2	Median	0.8325	0.99991	14.355	4	1	Median	1.2621	1.2012	22.113	4	1	Median	0.88558	0.97256	59.505	3	1	Plateau	568130000	305110000	263020000	161790000	93875000	67918000	140330000	81963000	58365000	172720000	80997000	91726000	93289000	48280000	45009000	58205	2665	54839	354396;354397;354398;354399;354400;354401;354402;354403;354404;354405;354406;354407;354408;354409	478453;478454;478455;478456;478457;478458;478459;478460;478461;478462;478463;478464;478465;478466;478467;478468;478469;478470;478471;478472;478473;478474;478475;478476	478461			24	
WVTVGYHYNWDSK	1	Unmodified	1653.7576	0.75759147	2465	Q13686	ALKBH1	Alkylated DNA repair protein alkB homolog 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.269	59.395	3	0.020564	32602	160513_QHF_FH_JSI10Kac_6	38.511	28.589			0.69846	0.8056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.69846	0.8056	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14685000	8206700	6478100	0	0	0	14685000	8206700	6478100	0	0	0	0	0	0	58206	2465	54840	354410	478477	478477			1	
WVTYFNKPDIDAWELRK	2	Unmodified	2180.1055	0.10547471	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			6						6	2	2	7	1	83.198	79.256	3;4	0.0019845	75306	160511_QHF_FH_JSI11i_3	46.621	43.43			0.83079	0.96664	22.647	12	6	Plateau	1.0213	0.87434	8.1741	2	2	Median	0.86574	1.028	8.7065	2	0	Median	0.74769	0.70461	21.53	7	4	Median	0.85425	0.91455	NaN	1	0	Median	1120600000	637060000	483500000	239810000	122030000	117770000	599960000	367350000	232610000	216360000	120620000	95736000	64435000	27059000	37376000	58207	1179	54841	354411;354412;354413;354414;354415;354416;354417;354418;354419;354420;354421;354422	478478;478479;478480;478481;478482;478483;478484;478485;478486;478487;478488;478489;478490;478491	478478			14	
WVTYFNKPDIDAWELRK	2	Acetyl (K)	2222.116	0.1160394	1179	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	yes	yes	1	0	0	2			By MS/MS		16	0									1			1		87.484	78.155	3	0.001799	43551	160513_QHF_FH_JSI11Kac_6	66.827	57.663			0.44415	0.43088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44415	0.43088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69550000	56727000	12823000	0	0	0	0	0	0	69550000	56727000	12823000	0	0	0	58208	1179	54841	354423	478492	478492	1033		1	
WVVIGDENYGEGSSR	0	Unmodified	1666.7587	0.75871368	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								3	2	2	1	57.672	56.86	2	9.1197E-15	49196	160511_QHF_FH_JSI11i_2	161.99	147.31			0.84923	0.94525	24.588	7	0	Median	1.5075	1.2579	15.459	2	0	Median	0.6693	0.80232	31.023	2	0	Median	0.87735	0.87149	11.489	2	0	Median	0.84923	0.9432	NaN	1	0	Median	1187900000	638630000	549260000	204750000	87550000	117200000	369090000	229460000	139640000	405850000	224170000	181680000	208200000	97452000	110750000	58209	4315	54842	354424;354425;354426;354427;354428;354429;354430;354431	478493;478494;478495;478496;478497;478498;478499;478500;478501;478502;478503;478504	478503			12	
WVVPVLPK	1	Unmodified	936.57967	0.57967409	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	2	1	74.069	73.16	2	0.010972	63977	160511_QHF_FH_JSI11i_2	63.148	59.755			1.0415	0.99241	10.536	7	0	Median	1.1677	0.96996	11.117	2	0	Median	0.83082	0.98764	0.68101	2	0	Median	1.0361	0.99762	7.6134	2	0	Median	1.1047	1.2467	NaN	1	0	Median	441440000	210670000	230770000	70811000	27340000	43471000	115920000	60034000	55884000	162020000	81456000	80567000	92693000	41844000	50849000	58210	3921	54843	354432;354433;354434;354435;354436;354437;354438	478505;478506;478507;478508;478509;478510;478511;478512;478513;478514;478515	478513			11	
WVVYTTEMNGK	1	Unmodified	1326.6278	0.62782285	5319	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.833	52.866	2	0.00016529	45367	160511_QHF_FH_JSI12i_2	82.749	67.599			1.0818	1.1911	13.037	4	1	Median	1.3579	1.1621	NaN	1	0	Median	0.99199	1.2208	NaN	1	1	Median	0.95214	0.98293	NaN	1	0	Median	1.1798	1.3419	NaN	1	0	Median	213120000	108430000	104690000	37836000	15064000	22772000	46139000	25966000	20173000	76449000	43633000	32816000	52700000	23768000	28932000	58211	5319	54844	354439;354440;354441;354442	478516;478517;478518;478519;478520;478521;478522	478518			7	
WVYGPGGAR	0	Unmodified	961.477	0.47699993	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	30.039	29.567	2	0.00081451	25503	160511_QHF_FH_JSI11i_3	73.616	61.409			0.94758	0.96049	26.206	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2629	1.536	NaN	1	0	Median	1.0679	0.99277	NaN	1	0	Median	0.94758	0.96049	NaN	1	0	Median	286100000	154030000	132070000	0	0	0	80912000	39099000	41814000	85756000	51683000	34073000	119430000	63249000	56181000	58212	586	54845	354443;354444;354445	478523;478524;478525;478526;478527	478524			5	
WVYPLTPEANFTDSTTQSCTHSR	0	Unmodified	2697.2129	0.21292926	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	72.263	71.906	3	2.8649E-11	62385	160511_QHF_FH_JSI12i_3	103.84	97.191			1.3132	1.3248	22.269	3	1	Median	NaN	NaN	NaN	0	0	Median	1.3132	1.607	NaN	1	1	Median	1.1044	1.0307	NaN	1	0	Median	1.325	1.3248	NaN	1	0	Median	126550000	53329000	73218000	0	0	0	31952000	10714000	21238000	41322000	17344000	23978000	53273000	25271000	28002000	58213	2358	54846	354446;354447;354448;354449	478528;478529;478530;478531;478532;478533;478534;478535	478535			8	
WVYPSEQMFWNAMLK	1	Unmodified	1928.8953	0.89534728	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		95.235	85.843	2	0.0096111	48525	160513_QHF_FH_JSI11Kac_6	63.408	48.718			2.8725	2.7637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.8725	2.7637	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	83585000	19058000	64526000	0	0	0	0	0	0	83585000	19058000	64526000	0	0	0	58214	1810	54847	354450	478536	478536			1	
WWDIIDIQKK	2	Unmodified	1343.7238	0.72377215	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	76.749	76.472	3	0.00043794	66410	160511_QHF_FH_JSI12i_3	74.944	69.46			1.8529	1.9909	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8529	1.9909	NaN	1	1	Median	19636000	4730900	14905000	0	0	0	0	0	0	0	0	0	19636000	4730900	14905000	58215	2755	54848	354451	478537	478537			1	
WWDNLNHLNQFVDHEK	1	Unmodified	2093.9708	0.97077214	2480	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1		1	3	3	74.213	73.177	3;4	0.00041932	64332	160511_QHF_FH_JSI12i_3	55.864	46.863			1.0161	1.0562	29.398	7	2	Median	NaN	NaN	NaN	0	0	Median	1.0161	1.1977	NaN	1	0	Median	0.95058	0.87455	24.071	3	1	Plateau	1.2716	1.3457	21.854	3	1	Median	404790000	212630000	192150000	0	0	0	119440000	62262000	57173000	138760000	78284000	60480000	146590000	72086000	74501000	58216	2480	54849	354452;354453;354454;354455;354456;354457;354458	478538;478539;478540;478541;478542;478543;478544;478545;478546;478547;478548	478546			10	
WWGLQNK	1	Unmodified	930.47119	0.47118627	2145	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	51.086	45.992	2	0.0080097	38434	160511_QHF_FH_JSI10i_3	85.306	67.54			0.93934	0.92606	11.854	8	0	Median	1.1671	0.96332	2.6955	2	0	Median	0.70076	0.80935	19.751	2	0	Median	0.93934	0.90666	2.2341	2	0	Median	0.93308	0.98977	10.108	2	0	Median	831890000	360380000	471510000	162830000	67933000	94902000	150650000	81038000	69616000	185640000	80291000	105350000	332760000	131120000	201650000	58217	2145	54850	354459;354460;354461;354462;354463;354464;354465;354466	478549;478550;478551;478552;478553;478554;478555;478556;478557;478558;478559;478560	478550			12	
WWGLQSK	1	Unmodified	903.46029	0.46028724	1636	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	52.692	47.606	2	0.011062	39000	160511_QHF_FH_JSI9i_3	72.138	60.77			0.86142	0.8197	14.574	8	0	Median	0.9995	0.83318	18.234	2	0	Median	0.80036	0.93793	27.313	2	0	Median	0.84242	0.79862	0.044393	2	0	Median	0.8581	0.89968	9.5249	2	0	Median	1764400000	853010000	911370000	381650000	157210000	224440000	375760000	193770000	181990000	408210000	201060000	207150000	598760000	300980000	297790000	58218	1636	54851	354467;354468;354469;354470;354471;354472;354473;354474	478561;478562;478563;478564;478565;478566;478567;478568;478569;478570	478565			10	
WWHTGALYR	0	Unmodified	1188.5829	0.58286199	895	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									71	13	20	19	19	56.628	47.348	2;3	6.8018E-05	23889	160513_QHF_FH_JSI11Kac_6	98.033	77.163			0.99221	1.0335	23.581	59	12	Median	1.3489	1.1592	10.452	12	4	Median	0.83289	0.98999	35.156	17	2	Median	1.0053	0.98309	17.414	17	4	Median	0.82976	0.87983	15.536	13	2	Median	3456900000	1717000000	1739800000	487550000	215450000	272100000	1968700000	1007100000	961580000	561030000	263110000	297920000	439600000	231370000	208230000	58219	895	54852	354475;354476;354477;354478;354479;354480;354481;354482;354483;354484;354485;354486;354487;354488;354489;354490;354491;354492;354493;354494;354495;354496;354497;354498;354499;354500;354501;354502;354503;354504;354505;354506;354507;354508;354509;354510;354511;354512;354513;354514;354515;354516;354517;354518;354519;354520;354521;354522;354523;354524;354525;354526;354527;354528;354529;354530;354531;354532;354533;354534;354535;354536;354537;354538;354539;354540;354541;354542;354543;354544;354545	478571;478572;478573;478574;478575;478576;478577;478578;478579;478580;478581;478582;478583;478584;478585;478586;478587;478588;478589;478590;478591;478592;478593;478594;478595;478596;478597;478598;478599;478600;478601;478602;478603;478604;478605;478606;478607;478608;478609;478610;478611;478612;478613;478614;478615;478616;478617;478618;478619;478620;478621;478622;478623;478624;478625;478626;478627;478628;478629;478630;478631;478632;478633;478634;478635;478636;478637;478638;478639;478640;478641;478642;478643;478644;478645;478646;478647	478574			73	
WWIGYLQR	0	Unmodified	1120.5818	0.58179936	5016	Q9NUU6	FAM105A	Inactive ubiquitin thioesterase FAM105A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	2	1	80.385	72.127	2	0.0021796	39329	160513_QHF_FH_JSI11Kac_6	95.793	61.996			1.0586	1.0196	5.4627	4	1	Median	1.1217	0.94154	NaN	1	0	Median	0.83827	0.98871	NaN	1	0	Median	1.1215	1.0558	NaN	1	1	Median	0.99929	1.0514	NaN	1	0	Median	639480000	355610000	283870000	129450000	61242000	68209000	358030000	217100000	140930000	79287000	42279000	37007000	72712000	34983000	37728000	58220	5016	54853	354546;354547;354548;354549;354550	478648;478649;478650;478651;478652;478653;478654	478649			7	
WWPGGLGK	1	Unmodified	899.46537	0.46537261	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	61.423	60.595	2	0.0062521	53661	160511_QHF_FH_JSI11i_3	63.148	51.243			0.80022	0.8247	8.8109	4	1	Median	1.1179	0.91511	NaN	1	0	Median	0.74484	0.8411	NaN	1	0	Median	0.85973	0.80863	NaN	1	0	Median	0.71734	0.74016	NaN	1	1	Median	912330000	560820000	351510000	134670000	65967000	68705000	130070000	74271000	55795000	143030000	74715000	68317000	504560000	345870000	158690000	58221	2624	54854	354551;354552;354553;354554	478655;478656;478657;478658;478659;478660;478661;478662	478655			8	
WWQLPYYWVGIK	1	Unmodified	1637.8395	0.83947061	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	2	3	2	95.694	87.132	2;3	4.6412E-08	49781	160513_QHF_FH_JSI9Kac_6	130.96	85.827			0.9857	0.91715	24.174	10	1	Median	1.0289	0.88949	31.964	3	0	Median	0.71023	0.83662	1.8693	2	0	Median	0.9443	0.89949	25.963	3	1	Plateau	1.0499	1.1084	24.034	2	0	Median	10454000000	5205700000	5248000000	2434000000	1164600000	1269300000	3335300000	1878100000	1457100000	3083700000	1447700000	1636000000	1600900000	715300000	885570000	58222	1558	54855	354555;354556;354557;354558;354559;354560;354561;354562;354563;354564	478663;478664;478665;478666;478667;478668;478669;478670;478671;478672;478673;478674;478675;478676;478677;478678	478671			16	
WWTCFVK	1	Unmodified	1025.4793	0.47930812	257	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	66.648	65.83	2	0.018889	56753	160511_QHF_FH_JSI12i_3	59.205	48.332			1.3307	1.349	26.972	4	1	Median	1.7255	1.4232	NaN	1	1	Median	1.1105	1.2788	NaN	1	0	Median	0.93117	0.86515	NaN	1	0	Median	1.5946	1.6159	NaN	1	0	Median	426200000	181870000	244330000	41496000	11509000	29987000	99013000	47955000	51059000	116090000	66496000	49597000	169600000	55914000	113690000	58223	257	54856	354565;354566;354567;354568	478679;478680;478681;478682;478683	478683			5	
WWVLGAWMR	0	Unmodified	1203.6012	0.60115459	4395	Q9BSF4	C19orf52	Uncharacterized protein C19orf52	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.67	85.299	2	5.2244E-07	49894	160513_QHF_FH_JSI10Kac_6	133.47	113.33			1.2112	1.1493	40.411	4	0	Median	1.5754	1.3493	NaN	1	0	Median	0.84962	0.97883	NaN	1	0	Median	0.93125	0.93636	NaN	1	0	Median	2.0879	2.2492	NaN	1	0	Median	325240000	161180000	164060000	70697000	28981000	41716000	189080000	103210000	85866000	36223000	17120000	19103000	29246000	11866000	17379000	58224	4395	54857	354569;354570;354571;354572	478684;478685;478686;478687;478688;478689	478689			6	
WYAEAMPFPLNFFLPGR	0	Unmodified	2055.0077	0.0076749204	2429	Q13505	MTX1	Metaxin-1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		100.02	90.604	2	0.0015238	52050	160513_QHF_FH_JSI11Kac_6	125.97	111.94			0.92554	0.91158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92554	0.91158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38751000	23027000	15724000	0	0	0	0	0	0	38751000	23027000	15724000	0	0	0	58225	2429	54858	354573	478690	478690			1	
WYAGLQK	1	Unmodified	864.44939	0.4493882	1358	P30536	TSPO	Translocator protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	32.444	31.814	2	0.013952	26703	160511_QHF_FH_JSI12i_3	66.994	31.888			1.1116	1.1433	71.949	6	1	Median	1.4385	1.2227	NaN	1	0	Median	0.859	1.0691	NaN	1	0	Median	1.4548	1.4421	144.54	2	1	Median	1.124	1.1763	65.272	2	0	Median	1525100000	727930000	797180000	202150000	105870000	96279000	290290000	147060000	143230000	610120000	251140000	358980000	422550000	223860000	198690000	58226	1358	54859	354574;354575;354576;354577;354578;354579	478691;478692;478693;478694;478695;478696;478697	478697			7	
WYDLEYSNEYSLKPQPQDVVSK	2	Unmodified	2687.2755	0.27551274	2213	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	73.813	73.523	3	1.2437E-05	63809	160511_QHF_FH_JSI12i_3	72.015	66.585			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16825000	0	16825000	0	0	0	0	0	0	0	0	0	16825000	0	16825000	58227	2213	54860	354580	478698;478699	478699			2	
WYDLMDNK	1	Unmodified	1083.4695	0.46953129	4399	Q9BSJ8	ESYT1	Extended synaptotagmin-1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.783	51.827	2	0.012705	44792	160511_QHF_FH_JSI11i_2	61.999	51.532			0.83014	0.88079	27.743	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7199	0.7239	NaN	1	1	Median	0.95726	1.0717	NaN	1	0	Median	189410000	102920000	86489000	0	0	0	0	0	0	117280000	61516000	55766000	72125000	41401000	30724000	58228	4399	54861	354581;354582	478700;478701	478701			2	
WYELGHK	1	Unmodified	931.4552	0.45520186	2307	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		21.695	21.695	3	0.0075653	18308	160511_QHF_FH_JSI11i_3	47.067	25.603			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58229	2307	54862	354583	478702	478702			1	
WYFLLAR	0	Unmodified	967.52797	0.52797287	2710	Q15800	MSMO1	Methylsterol monooxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			2						2	1	2	1		85.565	82.911	2	0.0092953	43037	160513_QHF_FH_JSI10Kac_6	85.306	57.2			0.94841	1.1285	15.839	3	0	Median	1.6409	1.4039	NaN	1	0	Median	0.89851	1.0791	6.3332	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	752140000	352700000	399440000	8566100	4059800	4506400	743580000	348640000	394940000	0	0	0	0	0	0	58230	2710	54863	354584;354585;354586;354587	478703;478704;478705;478706;478707	478707			5	
WYHAQMPDSLR	0	Unmodified	1402.6452	0.64520425	3819	Q8WYP5	AHCTF1	Protein ELYS	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	44.083	43.845	3	0.039119	37577	160511_QHF_FH_JSI12i_3	22.321	19.098			3.4138	3.3104	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.4138	3.3104	NaN	1	0	Median	44150000	17705000	26444000	0	0	0	0	0	0	0	0	0	44150000	17705000	26444000	58231	3819	54864	354588	478708	478708			1	
WYHPGCFVK	1	Unmodified	1192.5488	0.54878467	939	P09874	PARP1	Poly [ADP-ribose] polymerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			40.252	38.743	3	0.0099127	32475	160511_QHF_FH_JSI10i_3	31.422	25.389			1.025	0.99789	12.388	2	0	Median	1.1156	0.9142	NaN	1	0	Median	0.94185	1.0892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	177730000	91111000	86619000	61416000	32560000	28856000	116310000	58551000	57763000	0	0	0	0	0	0	58232	939	54865	354589;354590	478709;478710;478711;478712	478711			4	
WYKDAHVAK	2	Acetyl (K)	1158.5822	0.58219329	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	32.84	24.008	3	0.0014992	13513	160513_QHF_FH_JSI11Kac_6	64.297	34.043			0.27833	0.2553	102.43	3	1	Median	NaN	NaN	NaN	0	0	Median	0.84515	1.0198	NaN	1	0	Median	0.27833	0.2553	NaN	1	0	Median	0.12748	0.13805	NaN	1	1	Median	92655000	68384000	24271000	0	0	0	26207000	16599000	9608300	57739000	43605000	14134000	8708900	8179700	529190	58233	3218	54866	354591;354592;354593	478713;478714;478715;478716;478717	478714	2804		5	
WYKEAHVAK	2	Acetyl (K)	1172.5978	0.59784335	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	31.96	23.214	3	0.0037776	13200	160513_QHF_FH_JSI11Kac_6	52.79	34.118			0.4511	0.47299	82.715	3	0	Median	NaN	NaN	NaN	0	0	Median	1.2818	1.4853	NaN	1	0	Median	0.31245	0.29786	NaN	1	0	Median	0.4511	0.47299	NaN	1	0	Median	72162000	51571000	20591000	0	0	0	14133000	6121200	8012000	51015000	40309000	10706000	7013800	5141100	1872600	58234	5722	54867	354594;354595;354596	478718;478719;478720	478719	3541		3	
WYLENVYPELR	0	Unmodified	1480.7351	0.73506511	2294	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.205	84.611	2	0.0046049	74561	160511_QHF_FH_JSI11i_2	71.889	54.722			1.271	1.2972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.271	1.2972	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	182900000	78127000	104770000	0	0	0	0	0	0	182900000	78127000	104770000	0	0	0	58235	2294	54868	354597	478721	478721			1	
WYLSAFHAGR	0	Unmodified	1206.5934	0.59342667	4248	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	65.253	56.087	3	0.00057179	30756	160513_QHF_FH_JSI10Kac_6	61.353	57.336			0.94501	0.95398	4.4254	4	0	Median	1.2078	1.0293	NaN	1	0	Median	0.82507	0.96876	NaN	1	0	Median	0.9917	0.93497	NaN	1	0	Median	0.90051	0.93944	NaN	1	0	Median	157060000	87988000	69067000	21204000	8051800	13152000	88128000	55035000	33093000	29004000	14226000	14778000	18718000	10676000	8042600	58236	4248	54869	354598;354599;354600;354601	478722;478723;478724;478725;478726;478727	478727			6	
WYLSGFYK	1	Unmodified	1062.5175	0.51746776	4560;4648	Q9H0X9;Q9BZF1	OSBPL5;OSBPL8	Oxysterol-binding protein-related protein 5;Oxysterol-binding protein-related protein 8	no	no	0	0	0	0			By MS/MS		16	0									1			1		77.903	68.585	2	0.014771	37512	160513_QHF_FH_JSI11Kac_6	57.177	39.938			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58237	4648;4560	54870	354602	478728	478728			1	
WYNGTNNK	1	Unmodified	995.44609	0.44609374	1111	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	2	0.816	2	2	2							1	1	2	2	9.6251	9.4006	2	0.0062316	7091	160511_QHF_FH_JSI9i_2	63.21	56.386			1.0938	0.97274	31.547	5	2	Median	1.1331	0.97274	NaN	1	0	Median	0.70773	0.83923	NaN	1	0	Median	1.4823	1.361	41.322	2	2	Median	0.84232	0.8667	NaN	1	0	Median	269410000	123590000	145830000	59429000	18487000	40942000	45459000	28437000	17022000	99626000	37594000	62032000	64899000	39069000	25830000	58238	1111	54871	354603;354604;354605;354606;354607;354608	478729;478730;478731;478732;478733	478732			5	
WYNHIKSYEK	2	Acetyl (K)	1408.6776	0.67755023	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	1	0	0	1		By matching	By MS/MS		16	0									3		1	2		42.972	33.686	3	0.0010721	18616	160513_QHF_FH_JSI11Kac_6	65.395	49.142			0.2991	0.2985	70.418	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89329	1.0474	NaN	1	0	Median	0.31396	0.30985	5.2775	2	0	Median	NaN	NaN	NaN	0	0	Median	90430000	59597000	30833000	0	0	0	23995000	9780900	14214000	66435000	49817000	16618000	0	0	0	58239	1245	54872	354609;354610;354611	478734;478735;478736	478736	1141		3	
WYNLMIQNK	1	Unmodified	1208.6012	0.60121417	1746	P51649	ALDH5A1	Succinate-semialdehyde dehydrogenase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4		2	1	2	66.658	59.476	2	0.0024182	32745	160513_QHF_FH_JSI10Kac_6	78.496	52.602			0.89802	0.95991	52.028	4	0	Median	NaN	NaN	NaN	0	0	Median	1.2735	1.5015	70.536	2	0	Median	1.046	1.0105	NaN	1	0	Median	0.70175	0.77515	NaN	1	0	Median	108050000	57076000	50972000	0	0	0	71433000	39804000	31629000	22725000	10740000	11984000	13891000	6531800	7359000	58240	1746	54873	354612;354613;354614;354615;354616	478737;478738;478739;478740;478741;478742;478743	478743			7	
WYPEEYEFAPK	1	Unmodified	1457.6503	0.65033243	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.433	67.535	2	0.00029574	58178	160511_QHF_FH_JSI12i_2	75.294	57.43			0.81161	0.84116	1.603	4	2	Median	1.0122	0.86783	NaN	1	0	Median	0.67537	0.83928	NaN	1	1	Median	0.84814	0.84189	NaN	1	1	Median	0.77665	0.84043	NaN	1	0	Median	358990000	206590000	152400000	65939000	37656000	28284000	109910000	67668000	42245000	102020000	58820000	43201000	81113000	42445000	38668000	58241	5576	54874	354617;354618;354619;354620	478744;478745;478746;478747;478748;478749	478745			6	
WYPEEYEFAPKK	2	Unmodified	1585.7453	0.74529545	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	57.249	56.995	3	0.0095547	49005	160511_QHF_FH_JSI12i_3	45.115	34.63			1.7493	1.8224	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7493	1.8224	NaN	1	1	Median	40395000	16479000	23916000	0	0	0	0	0	0	0	0	0	40395000	16479000	23916000	58242	5576	54875	354621	478750;478751	478751			2	
WYQMGAYQPFFR	0	Oxidation (M)	1608.7184	0.71836919	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			4						4	2	2	2	2	72.743	68.102	2	2.4163E-10	35758	160513_QHF_FH_JSI9Kac_6	119.07	112.53			0.98655	0.98938	8.9749	8	0	Median	1.3223	1.0817	13.099	2	0	Median	0.81903	0.96524	3.982	2	0	Median	1.1002	1.058	6.8868	2	0	Median	0.90213	0.93355	5.226	2	0	Median	826470000	436010000	390460000	179280000	80604000	98678000	328750000	199460000	129300000	132720000	64318000	68406000	185710000	91637000	94077000	58243	2569	54876	354622;354623;354624;354625;354626;354627;354628;354629	478752;478753;478754;478755;478756;478757;478758;478759;478760;478761;478762;478763;478764;478765	478762		2017	14	
WYQMGAYQPFFR	0	Unmodified	1592.7235	0.72345457	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.61		4	8						9	8	4	3	6	83.371	79.37	2;3	7.5236E-19	40092	160513_QHF_FH_JSI9Kac_6	150.36	144.12			1.0185	1.0159	34.022	20	8	Median	1.1665	0.94617	47.181	7	4	Median	0.89972	1.0637	31.836	4	0	Median	1.0355	1.0083	4.7731	3	2	Median	0.9732	1.039	31.106	6	2	Median	5450400000	2485700000	2964700000	1246800000	517970000	728840000	2448300000	1151000000	1297300000	757310000	337740000	419570000	997920000	478990000	518930000	58244	2569	54876	354630;354631;354632;354633;354634;354635;354636;354637;354638;354639;354640;354641;354642;354643;354644;354645;354646;354647;354648;354649;354650	478766;478767;478768;478769;478770;478771;478772;478773;478774;478775;478776;478777;478778;478779;478780;478781;478782;478783;478784;478785;478786;478787;478788;478789;478790;478791	478779			25	
WYQYFTK	1	Unmodified	1034.4862	0.48616764	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		46.126	46.126	2	0.02967	40754	160511_QHF_FH_JSI11i_3	54.549	36.514			1.5654	1.4473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5654	1.4473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35333000	15177000	20156000	0	0	0	0	0	0	35333000	15177000	20156000	0	0	0	58245	4890	54877	354651	478792	478792			1	
WYTMLANEK	1	Unmodified	1154.543	0.54303059	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			50.694	49.745	2	0.018992	43917	160511_QHF_FH_JSI10i_2	51.066	37.612			18.597	22.977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18.597	22.977	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	534330000	31930000	502400000	0	0	0	534330000	31930000	502400000	0	0	0	0	0	0	58246	3795	54878	354652	478793	478793			1	
WYVDGPASTAFQEHVSR	0	Unmodified	1948.9068	0.9067749	1621	P48449	LSS	Lanosterol synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		61.739	60.728	3	0.00015262	53898	160511_QHF_FH_JSI11i_3	61.096	51.812			1.4754	1.3654	38.976	3	2	Median	2.9452	2.4683	NaN	1	1	Median	1.0006	1.1834	NaN	1	0	Median	1.4754	1.3654	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	164300000	61590000	102710000	15665000	4137800	11527000	54464000	21639000	32825000	94173000	35813000	58360000	0	0	0	58247	1621	54879	354653;354654;354655	478794;478795;478796	478794			3	
WYVNLHSLMDR	0	Unmodified	1432.6922	0.69215444	626	O94919	ENDOD1	Endonuclease domain-containing 1 protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			79.047	73.299	3	0.00076128	40080	160513_QHF_FH_JSI10Kac_6	62.088	47.526			0.59545	0.70411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.59545	0.70411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	37291000	18742000	18549000	0	0	0	37291000	18742000	18549000	0	0	0	0	0	0	58248	626	54880	354656	478797	478797			1	
WYYNAAGFNK	1	Unmodified	1232.5615	0.56145784	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	4	3	3	3	55.36	51.36	2	2.0001E-06	45432	160511_QHF_FH_JSI11i_3	111.82	99.968			1.111	1.1601	19.585	11	6	Median	1.4288	1.2359	4.1056	3	2	Plateau	0.81417	0.94025	14.726	2	1	Median	1.0775	1.0542	18.762	3	1	Median	1.111	1.1778	32.476	3	2	Median	2270300000	1159800000	1110500000	232180000	98506000	133670000	177370000	88208000	89158000	1028900000	583490000	445410000	831850000	389580000	442270000	58249	1066	54881	354657;354658;354659;354660;354661;354662;354663;354664;354665;354666;354667;354668;354669	478798;478799;478800;478801;478802;478803;478804;478805;478806;478807;478808;478809;478810;478811;478812	478798			15	
YAACNAVGQMATDFAPGFQK	1	Unmodified	2145.9612	0.96119501	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4									3	2	3	81.101	80.529	3	8.3335E-09	70758	160511_QHF_FH_JSI11i_2	106.94	102.14			0.93856	0.92377	26.193	7	6	Median	NaN	NaN	NaN	0	0	Median	0.82525	0.9976	23.86	2	2	Median	0.92225	0.90747	2.5172	2	1	Median	1.1802	1.3009	41.388	3	3	Plateau	397710000	213980000	183730000	0	0	0	111080000	62206000	48874000	166980000	94377000	72600000	119650000	57394000	62256000	58250	127	54882	354670;354671;354672;354673;354674;354675;354676;354677	478813;478814;478815;478816;478817;478818;478819;478820;478821;478822	478819			10	
YAAIDPSMVSAEELEVQK	1	Unmodified	1978.9558	0.95575851	5151	Q9NZD8	SPG21	Maspardin	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		77.825	77.5	2;3	5.2728E-07	70385	160511_QHF_FH_JSI10i_1	92.856	71.225			0.74354	0.70888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.74354	0.70888	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	46851000	28103000	18748000	0	0	0	0	0	0	46851000	28103000	18748000	0	0	0	58251	5151	54883	354678;354679	478823;478824	478824			2	
YAAKFYR	1	Acetyl (K)	959.4865	0.48650199	942;2388	P09914;Q13325	IFIT1;IFIT5	Interferon-induced protein with tetratricopeptide repeats 1;Interferon-induced protein with tetratricopeptide repeats 5	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	42.205	33.026	2	0.0093735	18134	160513_QHF_FH_JSI11Kac_6	92.319	62.981			0.74975	0.76362	18.203	4	0	Median	0.71406	0.61083	NaN	1	0	Median	0.63493	0.75567	NaN	1	0	Median	0.78722	0.77165	NaN	1	0	Median	0.87914	0.95357	NaN	1	0	Median	47531000	25303000	22228000	7472700	4347600	3125100	17304000	9477000	7827400	13849000	6618200	7230800	8905000	4860200	4044700	58252	942;2388	54884	354680;354681;354682;354683	478825;478826	478826	706		2	
YAALANLDNIFSAGQGGDQGSGFGTTGK	1	Unmodified	2716.2729	0.27288698	1774	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								2	2	3	98.079	98.013	3	3.0646E-21	87255	160511_QHF_FH_JSI11i_3	131.56	128.95			0.90694	0.86737	30.034	6	5	Median	NaN	NaN	NaN	0	0	Median	0.51133	0.62357	NaN	1	1	Median	1.041	0.95252	24.457	2	2	Median	0.93822	0.93895	36.553	3	2	Median	243340000	134630000	108700000	0	0	0	25103000	16383000	8719200	89690000	45857000	43833000	128540000	72393000	56151000	58253	1774	54885	354684;354685;354686;354687;354688;354689;354690	478827;478828;478829;478830;478831;478832;478833;478834;478835;478836;478837;478838	478829			12	
YAALSDQGLDIK	1	Unmodified	1292.6612	0.66123147	3805	Q8WX93	PALLD	Palladin	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			55.369	54.973	2	0.0033223	49581	160511_QHF_FH_JSI10i_1	66.486	43.474			0.73164	0.8675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.73164	0.8675	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	217720000	128370000	89353000	0	0	0	217720000	128370000	89353000	0	0	0	0	0	0	58254	3805	54886	354691	478839	478839			1	
YAALSVDGEDENEGEDYAE	0	Unmodified	2074.8127	0.8127189	1237	P23588	EIF4B	Eukaryotic translation initiation factor 4B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	57.814	57.163	2	1.4989E-32	51574	160511_QHF_FH_JSI10i_1	191.79	186.71			1.0015	0.98421	2.7817	4	0	Linear	1.2805	1.046	NaN	1	0	Median	0.82147	0.97952	NaN	1	0	Median	1.0466	0.99827	NaN	1	0	Median	0.95829	1.0008	NaN	1	0	Median	567570000	300920000	266660000	69773000	24296000	45477000	187970000	108900000	79073000	155170000	81882000	73287000	154660000	85837000	68822000	58255	1237	54887	354692;354693;354694;354695	478840;478841;478842;478843;478844;478845;478846	478845			7	
YAALVVEPTSDGNYVTK	1	Unmodified	1825.9098	0.90979459	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	60.954	60.353	2	2.0446E-10	54586	160511_QHF_FH_JSI10i_1	141.13	116.27			0.87111	0.79864	24.935	6	4	Median	0.98623	0.79231	NaN	1	1	Median	0.66711	0.8012	37.819	2	1	Median	0.85987	0.80502	NaN	1	0	Median	0.93929	0.98745	32.949	2	2	Median	327100000	184510000	142590000	40899000	24863000	16036000	119640000	71080000	48556000	70552000	38548000	32004000	96010000	50013000	45997000	58256	940	54888	354696;354697;354698;354699;354700;354701;354702	478847;478848;478849;478850;478851;478852;478853;478854	478852			8	
YAALYQPLFDK	1	Unmodified	1327.6812	0.68123863	4309	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.71	6.63	2	4	2					4	2	3	4	4	3	76.074	71.353	2	1.1407E-23	63196	160511_QHF_FH_JSI12i_2	180.8	153.06			0.92769	1.0013	13.627	12	3	Median	1.2697	1.0802	16.616	3	1	Median	0.83252	0.9787	8.5174	4	0	Median	0.95256	0.96462	4.326	2	1	Median	0.95303	1.0669	17.14	3	1	Median	2265800000	1226400000	1039400000	403730000	195600000	208130000	655950000	384450000	271500000	662650000	351860000	310780000	543500000	294500000	249000000	58257	4309	54889	354703;354704;354705;354706;354707;354708;354709;354710;354711;354712;354713;354714;354715;354716	478855;478856;478857;478858;478859;478860;478861;478862;478863;478864;478865;478866;478867;478868;478869;478870;478871;478872;478873;478874;478875;478876;478877;478878;478879	478858			25	
YAAPEQNNDPQQSK	1	Unmodified	1588.7118	0.71176349	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		12.296	11.87	2	3.5273E-06	9530	160511_QHF_FH_JSI10i_1	122.51	85.166			0.96459	0.9325	16.027	3	2	Median	0.96459	0.78869	NaN	1	0	Median	0.93896	1.0866	NaN	1	1	Median	0.97811	0.9325	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	105490000	53607000	51885000	34234000	19927000	14307000	38488000	14787000	23701000	32771000	18893000	13877000	0	0	0	58258	3676	54890	354717;354718;354719	478880;478881;478882;478883	478881			4	
YAAVTQFEATDAR	0	Unmodified	1441.6838	0.68375782	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.09	2	5					1			1	2	3	2	44.719	42.728	2	5.2015E-06	37649	160511_QHF_FH_JSI10i_2	125.75	95.492			0.52647	0.58462	45.746	8	8	Median	0.71705	0.60933	NaN	1	1	Median	0.52404	0.62499	15.294	2	2	Median	0.46843	0.46376	62.862	3	3	Median	0.72648	0.77337	75.628	2	2	Median	532160000	287740000	244420000	51821000	27848000	23973000	56702000	32842000	23860000	229720000	131440000	98283000	193910000	95606000	98308000	58259	1862	54891	354720;354721;354722;354723;354724;354725;354726;354727	478884;478885;478886;478887;478888;478889;478890;478891	478891			8	
YAAVTQFEATDARR	0	Unmodified	1597.7849	0.78486885	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.64		5	3						5	3	6	2	2	39.298	35.291	2;3	2.4381E-30	29404	160511_QHF_FH_JSI10i_3	186.51	176.39			0.93422	1.0449	31.221	13	5	Median	1.3094	1.1125	16.442	3	0	Median	0.88085	1.0499	42.547	6	3	Median	1.182	1.1238	39.186	2	1	Median	0.86335	0.92005	7.334	2	1	Median	1320100000	659940000	660110000	291650000	128260000	163390000	755630000	388920000	366700000	152800000	73119000	79678000	119980000	69632000	50346000	58260	1862	54892	354728;354729;354730;354731;354732;354733;354734;354735;354736;354737;354738;354739;354740	478892;478893;478894;478895;478896;478897;478898;478899;478900;478901;478902;478903;478904;478905;478906;478907;478908	478893			17	
YAAYHDLPMS	0	Unmodified	1166.5066	0.50664508	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	46.042	45.251	2	0.00044858	38914	160511_QHF_FH_JSI11i_2	74.255	70.847			0.94974	1.0086	11.762	6	0	Median	1.2543	1.048	NaN	1	0	Median	0.81361	0.97243	24.421	2	0	Median	0.96619	0.9571	3.1873	2	0	Median	0.96378	1.0392	NaN	1	0	Median	352810000	185380000	167430000	62714000	30664000	32050000	98207000	48755000	49452000	135260000	69900000	65355000	56638000	36060000	20577000	58261	5555	54893	354741;354742;354743;354744;354745;354746	478909;478910;478911;478912;478913;478914;478915;478916	478914			7	
YAAYQQLQR	0	Unmodified	1139.5724	0.57235688	4549	Q9BYN0	SRXN1	Sulfiredoxin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	26.535	25.686	2	0.0044805	22319	160511_QHF_FH_JSI10i_2	66.993	46.368			0.64191	0.73287	10.782	3	2	Median	NaN	NaN	NaN	0	0	Median	0.59847	0.73287	NaN	1	1	Median	0.87508	0.87252	NaN	1	1	Median	0.64191	0.7165	NaN	1	0	Median	114500000	63233000	51271000	0	0	0	31750000	22833000	8917000	52343000	22872000	29471000	30411000	17528000	12883000	58262	4549	54894	354747;354748;354749	478917;478918;478919	478919			3	
YADALQEIIQER	0	Unmodified	1447.7307	0.73070802	5743	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	73.391	72.441	2	1.0752E-05	62537	160511_QHF_FH_JSI12i_2	117.98	96.512			1.3755	1.4814	3.3464	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4622	1.5169	NaN	1	1	Median	1.2939	1.4468	NaN	1	0	Median	182030000	70165000	111870000	0	0	0	0	0	0	91895000	35527000	56368000	90140000	34639000	55501000	58263	5743	54895	354750;354751	478920;478921	478920			2	
YADEEIPR	0	Unmodified	991.46108	0.4610751	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	24.258	23.64	2	0.0030152	20681	160511_QHF_FH_JSI10i_1	75.738	53.967			0.9883	1.0027	13.685	5	1	Median	1.2096	1.0027	NaN	1	0	Median	0.84555	1.0154	12.08	2	0	Median	0.9883	0.95995	NaN	1	0	Median	1.2453	1.3071	NaN	1	1	Median	986090000	458960000	527130000	191330000	73249000	118080000	280730000	146410000	134320000	269230000	141940000	127300000	244800000	97369000	147430000	58264	512	54896	354752;354753;354754;354755;354756	478922;478923;478924;478925;478926	478924			5	
YADEEIPRSPFK	1	Unmodified	1450.7092	0.70924429	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			47.43	46.468	3	0.0082645	40977	160511_QHF_FH_JSI10i_2	48.659	36.299			4.8779	6.039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.8779	6.039	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	328820000	27267000	301560000	0	0	0	328820000	27267000	301560000	0	0	0	0	0	0	58265	512	54897	354757	478927	478927			1	
YADFAPSLLQVWKK	2	Unmodified	1664.8926	0.89262839	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	89.661	89.281	3	0.00085344	77367	160511_QHF_FH_JSI12i_3	55.724	49.602			1.2229	1.2446	71.637	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0727	1.2496	NaN	1	0	Median	0.37544	0.3606	NaN	1	1	Median	1.2229	1.2446	NaN	1	0	Median	53874000	26844000	27030000	0	0	0	10200000	5549900	4650500	10027000	7079800	2947500	33647000	14214000	19432000	58266	4829	54898	354758;354759;354760	478928;478929;478930	478930			3	
YADLLLEK	1	Unmodified	963.5277	0.5276981	4271	Q99459	CDC5L	Cell division cycle 5-like protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			52.435	52.026	2	0.01829	46884	160511_QHF_FH_JSI10i_1	57.96	17.893			0.14814	0.16825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.14814	0.16825	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	29868000	23916000	5951500	0	0	0	29868000	23916000	5951500	0	0	0	0	0	0	58267	4271	54899	354761	478931	478931			1	
YADLNSNK	1	Unmodified	923.43486	0.43486035	5822				yes	yes	0	0	0	0		By MS/MS			14	0							1				1			9.4579	-0.50242	2	0.029951	3380	160513_QHF_FH_JSI10Kac_4	49.358	6.235	+		0.66883	0.77929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.66883	0.77929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10361000	5467500	4893800	0	0	0	10361000	5467500	4893800	0	0	0	0	0	0	58268	5822	54900	354762	478932	478932			1	
YADLPGIAR	0	Unmodified	974.51853	0.5185304	2441	Q13561	DCTN2	Dynactin subunit 2	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2.33	0.471		2	1							2			1	46.195	44.843	2	0.00083418	39252	160511_QHF_FH_JSI9i_2	84.568	44.465			1.3005	1.198	31.461	3	3	Median	1.6986	1.4312	42.056	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1139	1.198	NaN	1	1	Median	545770000	182160000	363610000	309730000	73865000	235860000	0	0	0	0	0	0	236050000	108290000	127750000	58269	2441	54901	354763;354764;354765	478933;478934;478935	478935			3	
YADLSHNR	0	Unmodified	974.45699	0.45699277	1818	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.86	1	8	4						4	3	3	5	6	8.0581	6.0627	2;3	9.797E-05	4992	160511_QHF_FH_JSI11i_3	130.04	119.63			1.1919	1.2873	29.829	17	1	Median	1.625	1.3801	19.787	3	0	Median	1.1407	1.4138	40.971	3	0	Median	1.2651	1.2873	21.949	5	0	Median	0.8912	0.95938	33.849	6	1	Median	2764400000	1183200000	1581200000	393470000	151720000	241740000	635850000	319660000	316190000	1020400000	379340000	641040000	714660000	332450000	382200000	58270	1818	54902	354766;354767;354768;354769;354770;354771;354772;354773;354774;354775;354776;354777;354778;354779;354780;354781;354782	478936;478937;478938;478939;478940;478941;478942;478943;478944;478945;478946;478947;478948;478949;478950;478951;478952;478953;478954	478937			19	
YADLTEDQLPSCESLK	1	Unmodified	1867.851	0.85095909	1144	P18669	PGAM1	Phosphoglycerate mutase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	3.6	9					1				2	2	2	4	61.825	60.236	2;3	3.1658E-137	54343	160511_QHF_FH_JSI10i_1	291.13	288.99			1.0721	1.0589	23.921	9	4	Median	1.3135	1.081	2.9292	2	1	Median	0.79322	0.94027	3.6048	2	1	Median	0.88727	0.85218	21.221	2	0	Median	1.0839	1.1404	22.784	3	2	Plateau	4691300000	2180900000	2510400000	644480000	274000000	370480000	1043700000	522620000	521100000	1572300000	702010000	870260000	1430800000	682240000	748600000	58271	1144	54903	354783;354784;354785;354786;354787;354788;354789;354790;354791;354792	478955;478956;478957;478958;478959;478960;478961;478962;478963;478964;478965;478966;478967;478968;478969;478970;478971;478972	478965			18	
YADLYAASFINLLYYPFSYLFR	0	Unmodified	2709.3519	0.35191257	1690	P49902	NT5C2	Cytosolic purine 5'-nucleotidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.49	98.772	2	3.3508E-74	58477	160513_QHF_FH_JSI10Kac_6	216.71	198.35			0.80725	0.93389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80725	0.93389	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60780000	32096000	28684000	0	0	0	60780000	32096000	28684000	0	0	0	0	0	0	58272	1690	54904	354793	478973	478973			1	
YADTLFDILVAGSMLAPGGTR	0	Unmodified	2167.0983	0.098340421	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	1	2	3	2	101.07	96.807	2;3	1.2557E-28	54660	160513_QHF_FH_JSI10Kac_6	152.04	142.99			1.0669	1.1562	7.7213	8	1	Median	1.3766	1.1773	NaN	1	0	Median	1.0142	1.2051	7.562	2	0	Median	1.0542	1.0696	7.6131	3	1	Median	1.0328	1.1267	9.1248	2	0	Median	1021100000	519490000	501620000	151730000	64826000	86904000	261440000	145460000	115980000	423940000	215340000	208600000	184000000	93865000	90137000	58273	5722	54905	354794;354795;354796;354797;354798;354799;354800;354801	478974;478975;478976;478977;478978;478979;478980	478980			7	
YADVIIPR	0	Unmodified	945.52837	0.5283668	4574	Q9BZX2;Q9HA47	UCK2;UCK1	Uridine-cytidine kinase 2;Uridine-cytidine kinase 1	yes	no	0	0	0	0				By MS/MS	2	0		1											1	46.708	45.312	2	0.061119	38758	160511_QHF_FH_JSI12i_2	43.808	25.077			1.0416	1.1772	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0416	1.1772	NaN	1	1	Median	92396000	47805000	44591000	0	0	0	0	0	0	0	0	0	92396000	47805000	44591000	58274	4574	54906	354802	478981	478981			1	
YADVIVHR	0	Unmodified	971.51886	0.51886475	5523	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.229	19.921	3	0.0051689	16319	160511_QHF_FH_JSI11i_2	40.002	16.573			1.4976	1.49	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4976	1.49	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	56452000	20462000	35990000	0	0	0	0	0	0	56452000	20462000	35990000	0	0	0	58275	5523	54907	354803	478982	478982			1	
YAEAVTR	0	Unmodified	808.40792	0.40791731	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.02	4	2	3		1	3	3	3		4	4	5	6	11.304	6.7563	2	3.2854E-11	5370	160513_QHF_FH_JSI11Kac_4	149.4	80.016			0.95362	1.0012	13.243	19	0	Median	1.2384	1.0187	13.63	4	0	Median	0.87426	1.0231	6.6901	4	0	Linear	0.95171	0.94382	8.1368	5	0	Median	0.88929	0.94491	16.98	6	0	Median	23567000000	11898000000	11669000000	6532500000	3003000000	3529500000	5033400000	2766000000	2267400000	4547600000	2301600000	2246000000	7453700000	3827600000	3626100000	58276	775	54908	354804;354805;354806;354807;354808;354809;354810;354811;354812;354813;354814;354815;354816;354817;354818;354819;354820;354821;354822	478983;478984;478985;478986;478987;478988;478989;478990;478991;478992;478993;478994;478995;478996;478997;478998;478999;479000;479001;479002	478992			20	
YAEAVTRAK	1	Unmodified	1007.54	0.53999412	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	8.3385	8.4362	3	0.012192	5879	160511_QHF_FH_JSI12i_3	46.819	15.325			0.22061	0.22374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.22061	0.22374	NaN	1	1	Median	167560000	138360000	29194000	0	0	0	0	0	0	0	0	0	167560000	138360000	29194000	58277	775	54909	354823	479003	479003			1	
YAEEDRR	0	Unmodified	937.42536	0.42535829	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.47		10	7				1	5		5	4	7	7	4.44	1.6238	2;3	0.00089149	2154	160511_QHF_FH_JSI9i_2	127.12	32.455			1.0638	1.0856	53.775	22	4	Median	1.5849	1.1473	82.232	5	0	Median	0.79383	0.95362	30.574	4	0	Median	1.3334	1.3576	32.487	6	2	Median	0.94	1.0559	48.689	7	2	Median	13054000000	5994200000	7059900000	2295000000	828230000	1466800000	2622900000	1429500000	1193400000	5188700000	2301500000	2887300000	2947400000	1435000000	1512400000	58278	1480	54910	354824;354825;354826;354827;354828;354829;354830;354831;354832;354833;354834;354835;354836;354837;354838;354839;354840;354841;354842;354843;354844;354845;354846	479004;479005;479006;479007;479008;479009;479010;479011;479012;479013;479014;479015;479016;479017;479018;479019;479020;479021;479022	479009			19	
YAEEELEQVR	0	Unmodified	1264.5935	0.59354583	2446	Q13586	STIM1	Stromal interaction molecule 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1	0	4									1	1	1	1	35.26	34.655	2	8.6316E-05	31365	160511_QHF_FH_JSI12i_1	86.136	41.741			1.0335	1.0067	11.02	4	0	Median	1.1694	0.98375	NaN	1	0	Median	1.0622	1.2281	NaN	1	0	Median	0.97779	0.96397	NaN	1	0	Median	1.0055	1.0301	NaN	1	0	Median	371780000	194600000	177180000	64230000	35505000	28726000	99040000	47222000	51819000	110880000	51589000	59287000	97636000	60284000	37352000	58279	2446	54911	354847;354848;354849;354850	479023;479024;479025	479024			3	
YAEEQQDLALLSISTFQR	0	Unmodified	2111.0535	0.053498719	107	O00203;Q13367	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	yes	no	0	0	0	0				By MS/MS	1	0	1												1	94.027	93.678	3	0.0012403	85119	160511_QHF_FH_JSI12i_1	42.633	32.675			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58280	107	54912	354851	479026	479026			1	
YAEERDR	0	Unmodified	937.42536	0.42535829	1436;1437	P35579;P35580	MYH9;MYH10	Myosin-9;Myosin-10	no	no	0	0	0	1		By MS/MS			15	0								1			1			4.9628	-4.512	3	0.050959	1386	160513_QHF_FH_JSI10Kac_5	32.355	0			0.89308	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89308	1.041	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11870000	6304300	5565400	0	0	0	11870000	6304300	5565400	0	0	0	0	0	0	58281	1436;1437	54913	354852	479027	479027			1	
YAEIVHLTLPDGTK	1	Unmodified	1555.8246	0.8246084	1189	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.384	65.484	3	2.5506E-05	57559	160511_QHF_FH_JSI9i_2	82.925	74.104			0.94238	0.92326	11.418	4	0	Median	0.92767	0.83331	NaN	1	0	Median	0.69149	0.84235	NaN	1	0	Median	1.0456	1.0119	NaN	1	0	Median	0.95733	1.0291	NaN	1	0	Median	354930000	194240000	160690000	36356000	18201000	18156000	85135000	47646000	37489000	150800000	87745000	63052000	82643000	40648000	41996000	58282	1189	54914	354853;354854;354855;354856	479028;479029;479030;479031;479032;479033;479034	479030			7	
YAEKLIQEGK	2	Acetyl (K)	1219.6449	0.64485312	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							3				2	1		46.546	36.34	2	0.010062	21580	160513_QHF_FH_JSI11Kac_4	71.349	24.151			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4019300	2256900	1762400	0	0	0	4019300	2256900	1762400	0	0	0	0	0	0	58283	878	54915	354857;354858;354859	479035;479036;479037	479037	596		3	
YAELLAIIEELGK	1	Unmodified	1460.8126	0.81264673	168	O14519	CDK2AP1	Cyclin-dependent kinase 2-associated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.8	5.6		4							1	1	1	1	2	101.94	99.975	2	3.8228E-15	90488	160511_QHF_FH_JSI11i_2	155.97	142.38			0.97086	0.9564	22.006	5	1	Median	0.9886	0.8505	NaN	1	0	Median	0.58583	0.72658	NaN	1	0	Median	0.95695	0.9564	NaN	1	0	Median	1.1014	1.1711	14.972	2	1	Median	412910000	207320000	205590000	49118000	24257000	24860000	48102000	30308000	17793000	120440000	62119000	58325000	195250000	90634000	104610000	58284	168	54916	354860;354861;354862;354863;354864	479038;479039;479040;479041;479042;479043;479044;479045	479042			8	
YAELLEEHR	0	Unmodified	1158.5669	0.56693715	1493	P40222	TXLNA	Alpha-taxilin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.974	26.61	2	0.010603	22318	160511_QHF_FH_JSI11i_2	50.04	6.2325			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58285	1493	54917	354865	479046	479046			1	
YAELLVSQGVVNQPEYEEEISK	1	Unmodified	2523.2381	0.2380646	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	78.904	78.374	3	1.6888E-05	71371	160511_QHF_FH_JSI12i_1	63.398	59.511			0.65422	0.67915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.65422	0.67915	NaN	1	1	Median	74715000	44970000	29745000	0	0	0	0	0	0	0	0	0	74715000	44970000	29745000	58286	2185	54918	354866	479047	479047			1	
YAELLVSQGVVNQPEYEEEISKYDK	2	Unmodified	2929.4233	0.42329919	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		2										1	1	81.98	80.856	3	8.3303E-07	71130	160511_QHF_FH_JSI11i_2	62.274	55.321			1.2678	1.3377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2678	1.3377	NaN	1	1	Median	13287000	2639000	10648000	0	0	0	0	0	0	0	0	0	13287000	2639000	10648000	58287	2185	54919	354867;354868	479048;479049	479049			2	
YAELSEEDLK	1	Unmodified	1195.5608	0.56084872	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		39.021	38.719	2	0.0006401	34860	160511_QHF_FH_JSI11i_1	85.744	71.587			1.8179	1.7681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8179	1.7681	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	143480000	62774000	80703000	0	0	0	0	0	0	143480000	62774000	80703000	0	0	0	58288	2832	54920	354869	479050	479050			1	
YAENVPHNMTEK	1	Unmodified	1431.6453	0.64526383	1396	P32780	GTF2H1	General transcription factor IIH subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		20.973	20.65	3	0.04647	17007	160511_QHF_FH_JSI11i_2	27.34	18.45			2.3157	2.2915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3157	2.2915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26590000	9980700	16610000	0	0	0	0	0	0	26590000	9980700	16610000	0	0	0	58289	1396	54921	354870	479051	479051			1	
YAEQLPVAQIIHQK	1	Unmodified	1636.8937	0.89369102	3867	Q92643	PIGK	GPI-anchor transamidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	62.637	61.739	3	1.461E-05	53114	160511_QHF_FH_JSI12i_2	76.262	59.094			0.86518	0.87461	16.101	2	0	Median	1.1622	0.98008	NaN	1	0	Median	0.64408	0.7805	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	95388000	42811000	52576000	39961000	14485000	25476000	55427000	28326000	27101000	0	0	0	0	0	0	58290	3867	54922	354871;354872;354873	479052;479053;479054	479052			3	
YAEQQNEEEK	1	Unmodified	1266.5364	0.53642488	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	6.9075	6.5104	2	1.0525E-08	4246	160511_QHF_FH_JSI9i_1	179.51	120.59			1.0534	0.84961	29.218	5	3	Median	1.1176	0.91633	10.692	2	2	Median	0.65804	0.79081	NaN	1	1	Median	0.59574	0.56137	NaN	1	0	Median	1.2151	1.2386	NaN	1	0	Median	343670000	180300000	163370000	127580000	59429000	68156000	81848000	46325000	35523000	50910000	29901000	21008000	83327000	44641000	38685000	58291	3267	54923	354874;354875;354876;354877;354878	479055;479056;479057;479058;479059	479058			5	
YAETLFDILVAGGMLAPGGTLADDMMR	0	Unmodified	2827.3595	0.35945884	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	9.25	6.76		1	1						2	1		2	1	101.89	95.655	3	2.0747E-12	91339	160511_QHF_FH_JSI11i_2	78.717	71.441			1.2965	1.2483	22.008	3	1	Plateau	1.2018	1.0333	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5596	1.5174	NaN	1	1	Median	1.3987	1.508	NaN	1	0	Median	140620000	50880000	89743000	73508000	28139000	45370000	0	0	0	9564400	2966000	6598400	57550000	19775000	37775000	58292	3218	54924	354879;354880;354881;354882	479060;479061;479062;479063	479062			4	
YAEYFLRPMLQYVCDNSPEVR	0	Unmodified	2649.2356	0.23557896	127	O00410	IPO5	Importin-5	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			88.185	82.466	3	0.00092966	46600	160513_QHF_FH_JSI10Kac_6	77.287	69.198			0.51501	0.59599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.51501	0.59599	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52074000	41359000	10715000	0	0	0	52074000	41359000	10715000	0	0	0	0	0	0	58293	127	54925	354883	479064	479064			1	
YAEYLQPSAK	1	Unmodified	1168.5764	0.57643921	5679	Q9Y5T4	DNAJC15	DnaJ homolog subfamily C member 15	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	30.429	29.83	2	0.029837	26512	160511_QHF_FH_JSI10i_1	39.848	23.308			1.8884	1.7878	11.606	4	1	Median	1.9699	1.6669	NaN	1	0	Median	1.289	1.5141	NaN	1	0	Median	1.9799	1.9216	NaN	1	1	Median	1.8104	1.9175	NaN	1	0	Median	172730000	71537000	101190000	30958000	10450000	20508000	36154000	14394000	21760000	45776000	21202000	24574000	59841000	25491000	34350000	58294	5679	54926	354884;354885;354886;354887	479065;479066	479066			2	
YAEYSFTSLPVPESNLR	0	Unmodified	1971.9578	0.95780742	2977	Q5UIP0	RIF1	Telomere-associated protein RIF1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	84.337	83.275	2	3.218E-07	73272	160511_QHF_FH_JSI11i_2	95.417	68.631			1.3842	1.5317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3842	1.5317	NaN	1	0	Median	20994000	6774400	14219000	0	0	0	0	0	0	0	0	0	20994000	6774400	14219000	58295	2977	54927	354888;354889;354890;354891	479067;479068;479069;479070;479071	479070			5	
YAFDFAR	0	Unmodified	888.413	0.41300269	4418;3845	Q9BTE7;Q92564	DCUN1D5;DCUN1D4	DCN1-like protein 5;DCN1-like protein 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	52.866	51.896	2	0.011323	44800	160511_QHF_FH_JSI11i_2	71.141	61.391			1.087	1.14	10.3	4	0	Median	1.3328	1.1251	NaN	1	0	Median	0.75981	0.94187	NaN	1	0	Median	1.1338	1.1552	NaN	1	0	Median	1.0422	1.1796	NaN	1	0	Median	334750000	171700000	163050000	61293000	30855000	30438000	69754000	37730000	32024000	135500000	64057000	71441000	68208000	39060000	29148000	58296	4418;3845	54928	354892;354893;354894;354895	479072;479073;479074;479075	479074			4	
YAFELVDK	1	Unmodified	983.4964	0.49639797	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	56.91	55.978	2	0.010155	47961	160511_QHF_FH_JSI12i_2	55.37	37.984			1.2836	1.3415	23.035	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1613	1.1399	NaN	1	0	Median	1.4187	1.5789	NaN	1	0	Median	92100000	41500000	50601000	0	0	0	0	0	0	55468000	26082000	29386000	36632000	15417000	21215000	58297	5482	54929	354896;354897	479076	479076			1	
YAFGQETNVPLNNFSADQVTR	0	Unmodified	2370.124	0.1240379	356	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	77.462	76.839	2	2.0959E-85	66242	160511_QHF_FH_JSI12i_2	248.23	236.25			1.0195	1.0513	15.318	7	1	Median	1.214	1.0513	NaN	1	0	Median	0.89559	1.0588	24.458	2	0	Median	1.0455	1.0198	12.268	2	0	Median	1.0667	1.119	23.885	2	1	Median	216890000	102910000	113980000	28508000	12358000	16151000	63551000	33723000	29827000	73835000	31219000	42616000	50993000	25607000	25387000	58298	356	54930	354898;354899;354900;354901;354902;354903;354904	479077;479078;479079;479080;479081;479082;479083;479084;479085;479086;479087;479088;479089;479090;479091	479081			15	
YAFHMILAGHR	0	Unmodified	1314.6655	0.66554576	5524	Q9Y2L5	TRAPPC8	Trafficking protein particle complex subunit 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			56.243	47.492	3;4	0.0018339	26098	160513_QHF_FH_JSI10Kac_6	49.3	45.656			0.87181	1.0367	3.3022	3	0	Plateau	1.282	1.0917	NaN	1	0	Median	0.88571	1.0443	2.9486	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101010000	53184000	47830000	17334000	7467300	9867100	83680000	45717000	37963000	0	0	0	0	0	0	58299	5524	54931	354905;354906;354907	479092;479093;479094	479094			2	
YAFLLHGYQPAHPTFPVEVLINAGR	0	Unmodified	2809.4704	0.470405	266	O15230	LAMA5	Laminin subunit alpha-5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			89.047	83.327	4	9.8334E-14	47202	160513_QHF_FH_JSI10Kac_6	147.67	132.35			0.4383	0.52576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4383	0.52576	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31477000	22758000	8719300	0	0	0	31477000	22758000	8719300	0	0	0	0	0	0	58300	266	54932	354908	479095	479095			1	
YAFSGVAFTGAK	1	Unmodified	1217.6081	0.60807369	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.6	6.54		4	4					3	4	5	3	4	3	65.955	60.738	2	4.2003E-19	33257	160513_QHF_FH_JSI10Kac_6	155.15	143.3			1.0863	1.1175	15	14	3	Median	1.1489	0.99101	13.507	4	1	Median	0.92709	1.1162	12.487	3	0	Median	1.1834	1.1713	18.067	4	2	Median	1.0791	1.1578	15.166	3	0	Median	1796900000	883280000	913590000	334870000	154820000	180060000	440400000	232280000	208120000	617070000	288510000	328550000	404540000	207680000	196860000	58301	1241	54933	354909;354910;354911;354912;354913;354914;354915;354916;354917;354918;354919;354920;354921;354922;354923	479096;479097;479098;479099;479100;479101;479102;479103;479104;479105;479106;479107;479108;479109;479110;479111;479112;479113;479114;479115;479116;479117;479118	479117			23	
YAFVNWINK	1	Unmodified	1153.592	0.59202969	1039	P13797;P13796	PLS3;LCP1	Plastin-3;Plastin-2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.69	6.22		4	5						4	4	3	3	3	75.012	71.799	2	3.1704E-08	60884	160511_QHF_FH_JSI10i_3	148.33	129.54			0.84135	0.9082	29.779	13	6	Median	0.79088	0.664	38.4	4	3	Median	0.85429	0.99414	7.4018	3	0	Plateau	0.89737	0.9082	25.089	3	1	Median	1.4385	1.4622	30.146	3	2	Plateau	13447000000	6922400000	6524200000	3446300000	1878900000	1567400000	2649200000	1461200000	1188000000	3166100000	1583600000	1582500000	4184900000	1998700000	2186200000	58302	1039	54934	354924;354925;354926;354927;354928;354929;354930;354931;354932;354933;354934;354935;354936	479119;479120;479121;479122;479123;479124;479125;479126;479127;479128;479129;479130;479131;479132;479133;479134;479135;479136;479137;479138;479139;479140	479122			22	
YAGDIIK	1	Unmodified	778.4225	0.42250475	3216	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	26.587	25.7	2	0.013827	21495	160511_QHF_FH_JSI11i_2	68.915	27.413			0.19191	0.22024	105.05	3	3	Median	0.86904	0.74167	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.089657	0.091544	NaN	1	1	Median	0.19191	0.22024	NaN	1	1	Median	1772800000	1606800000	166000000	113210000	63418000	49795000	0	0	0	1354300000	1284100000	70237000	305310000	259340000	45963000	58303	3216	54935	354937;354938;354939	479141;479142;479143	479143			3	
YAGEPVPFIEPPESFEFYAQQLRK	1	Unmodified	2841.4014	0.40138196	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	101.24	101.17	3;4	3.8544E-25	89665	160511_QHF_FH_JSI10i_2	154.42	147.22			0.94306	1.0209	19.568	6	0	Median	0.97441	0.8423	NaN	1	0	Median	0.82331	1.016	NaN	1	0	Median	0.97357	0.95412	37.754	2	0	Median	1.029	1.0785	7.0774	2	0	Median	1305800000	607460000	698320000	187880000	70030000	117850000	436620000	228860000	207760000	394190000	176710000	217470000	287100000	131860000	155240000	58304	1544	54936	354940;354941;354942;354943;354944;354945	479144;479145;479146;479147;479148;479149;479150	479150			6	
YAGFIHMK	1	Unmodified	965.47931	0.47930812	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3	2	1	1	2	40.942	36.107	3	0.0023458	31051	160511_QHF_FH_JSI11i_3	63.48	48.329			0.89915	0.85928	66.819	6	3	Median	0.65216	0.54326	40.214	2	1	Median	1.0061	1.1693	NaN	1	0	Median	1.7267	1.5579	NaN	1	1	Median	0.49263	0.52595	94.052	2	1	Median	145120000	78802000	66322000	43859000	23536000	20323000	11920000	7527400	4393000	34578000	9701000	24877000	54766000	38038000	16729000	58305	3063	54937	354946;354947;354948;354949;354950;354951	479151;479152;479153;479154	479151			4	
YAGGTNDK	1	Unmodified	824.36645	0.36644643	4965	Q9NRV9	HEBP1	Heme-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										1	2	1	4.3314	4.1366	2	0.014809	2105	160511_QHF_FH_JSI12i_1	60.478	43.551			0.65454	0.66052	30.337	4	2	Median	NaN	NaN	NaN	0	0	Median	0.48773	0.56576	NaN	1	0	Median	0.90631	0.88528	33.573	2	1	Median	0.60063	0.62488	NaN	1	1	Median	401540000	264300000	137240000	0	0	0	153450000	117330000	36122000	98413000	53912000	44501000	149680000	93066000	56613000	58306	4965	54938	354952;354953;354954;354955	479155;479156;479157	479156			3	
YAGGVAEYR	0	Unmodified	984.46649	0.46649483	5224	Q9P2T1	GMPR2	GMP reductase 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	20.539	19.561	2	0.00014543	16155	160511_QHF_FH_JSI12i_2	89.752	67.26			1.0752	1.2546	17.468	2	0	Median	NaN	NaN	NaN	0	0	Median	0.91612	1.1088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2619	1.4195	NaN	1	0	Median	202030000	105820000	96210000	0	0	0	116260000	62831000	53431000	0	0	0	85770000	42990000	42779000	58307	5224	54939	354956;354957	479158;479159;479160	479158			3	
YAGHVGSVNSIK	1	Unmodified	1230.6357	0.63568542	5521	Q9Y2I8	WDR37	WD repeat-containing protein 37	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	19.54	19.553	2	1.7322E-06	15871	160511_QHF_FH_JSI12i_3	101.65	69.712			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58308	5521	54940	354958	479161	479161			1	
YAGKDGYNYTLSK	2	Acetyl (K)	1520.7147	0.7147236	1387	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						2	3				2	2	1	54.098	43.911	2	2.6096E-62	24240	160513_QHF_FH_JSI10Kac_4	218.01	192.45			0.75804	0.86035	44.19	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.2181	19.513	2	0	Median	0.54478	0.51563	NaN	1	0	Median	0.64951	0.69756	NaN	1	0	Median	73365000	33395000	39970000	0	0	0	40932000	22782000	18150000	15660000	1570000	14090000	16772000	9043400	7729000	58309	1387	54941	354959;354960;354961;354962;354963	479162;479163;479164;479165;479166;479167	479163	1341		6	
YAGLSTCFR	0	Unmodified	1073.4964	0.49641475	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	42.674	41.794	2	0.00029835	35921	160511_QHF_FH_JSI11i_2	93.992	60.441			1.1615	1.2555	22.333	7	5	Median	1.5906	1.2911	NaN	1	0	Median	0.87492	1.0426	3.8608	2	1	Median	1.036	1.0207	33.965	2	2	Median	1.3794	1.424	17.807	2	2	Median	784010000	311980000	472030000	26337000	7427500	18909000	162890000	79112000	83778000	291950000	117010000	174940000	302840000	108430000	194400000	58310	1667	54942	354964;354965;354966;354967;354968;354969;354970	479168;479169;479170;479171;479172;479173	479171			6	
YAGSALQYEDVSTAVQNLQK	1	Unmodified	2184.0699	0.069877064	4888	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.496	9	7								4	3	5	4	76.962	76.332	2;3	1.8458E-42	69450	160511_QHF_FH_JSI11i_1	243.78	229.09			0.93615	0.92378	30.84	16	3	Median	1.2516	0.87656	26.063	4	0	Linear	0.80081	0.92735	19.183	3	0	Median	0.96516	0.9243	44.701	5	2	Median	0.94828	0.98271	18.88	4	1	Median	982090000	525860000	456230000	178520000	86173000	92352000	248170000	146950000	101220000	307170000	152810000	154360000	248220000	139920000	108300000	58311	4888	54943	354971;354972;354973;354974;354975;354976;354977;354978;354979;354980;354981;354982;354983;354984;354985;354986	479174;479175;479176;479177;479178;479179;479180;479181;479182;479183;479184;479185;479186;479187;479188;479189;479190;479191;479192;479193;479194;479195;479196	479175			23	
YAGSNIVQLLIGNK	1	Unmodified	1488.83	0.83002813	3388	Q86YS6	RAB43	Ras-related protein Rab-43	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			99.345	99.12	2	0.00061732	80345	160511_QHF_FH_JSI9i_3	69.979	61.754			0.86023	0.85847	10.17	2	0	Median	0.94277	0.79891	NaN	1	0	Median	0.78491	0.92248	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19307000	10379000	8927600	10246000	5384700	4861200	9060900	4994400	4066500	0	0	0	0	0	0	58312	3388	54944	354987;354988	479197;479198	479198			1	
YAHEKLNASR	1	Acetyl (K)	1229.6153	0.61528433	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		18.952	9.7723	3	6.6832E-05	7178	160513_QHF_FH_JSI11Kac_6	91.961	57.269			0.2446	0.23892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2446	0.23892	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12226000	9656600	2568900	0	0	0	0	0	0	12226000	9656600	2568900	0	0	0	58313	1664	54945	354989	479199	479199	1692		1	
YAHGLISDYIPK	1	Unmodified	1375.7136	0.71360139	2964	Q5TBB1	RNASEH2B	Ribonuclease H2 subunit B	yes	yes	0	0	0	0	By matching	By MS/MS		By matching	2.25	0.433		3	1							1	1		2	57.714	56.844	3	0.0033251	50183	160511_QHF_FH_JSI10i_2	43.502	35.778			0.89881	1.1817	8.7292	4	0	Linear	1.4613	1.2077	NaN	1	0	Median	0.88017	1.0641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1399	1.2317	8.9219	2	0	Median	175750000	71100000	104650000	35036000	14165000	20871000	53529000	29247000	24282000	0	0	0	87185000	27688000	59497000	58314	2964	54946	354990;354991;354992;354993	479200;479201	479200			2	
YAHMINGFTALALTK	1	Unmodified	1649.8599	0.85994805	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			10						5	4	5	2	4	76.467	73.141	2;3	3.8662E-32	38597	160513_QHF_FH_JSI10Kac_6	211.38	173.82			0.76954	0.78187	65.304	13	10	Median	0.93318	0.78187	6.5144	3	2	Median	0.754	0.90103	54.733	5	4	Median	0.70818	0.67691	102.61	2	1	Median	0.56197	0.57034	118	3	3	Median	1456200000	837260000	618970000	224750000	100710000	124040000	678850000	444780000	234070000	137090000	85785000	51301000	415560000	205990000	209560000	58315	1356	54947	354994;354995;354996;354997;354998;354999;355000;355001;355002;355003;355004;355005;355006;355007;355008	479202;479203;479204;479205;479206;479207;479208;479209;479210;479211;479212;479213;479214;479215;479216;479217;479218;479219	479218			17	
YAHMINGFTALALTK	1	Oxidation (M)	1665.8549	0.85486267	1356	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS			11.7	6.13			1						2	2	1			69.674	63.797	3	0.00013749	33712	160513_QHF_FH_JSI9Kac_6	81.448	75.542			0.94181	0.76759	14.993	3	2	Median	0.97778	0.82119	9.5456	2	1	Median	0.55201	0.65123	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	112740000	56945000	55799000	75984000	34701000	41283000	36760000	22243000	14517000	0	0	0	0	0	0	58316	1356	54947	355009;355010;355011	479220;479221;479222;479223	479222		992	4	
YAHVVLR	0	Unmodified	856.49192	0.49192172	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	16.676	15.883	2	0.0014324	12980	160511_QHF_FH_JSI10i_3	120.76	94.647			1.0755	1.0204	68.162	4	2	Median	1.9702	1.5753	101.87	2	2	Median	1.2068	1.3582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75583	0.7636	NaN	1	0	Median	2695100000	1128700000	1566400000	1203700000	426950000	776740000	445620000	210270000	235360000	0	0	0	1045800000	491530000	554280000	58317	1993	54948	355012;355013;355014;355015	479224;479225;479226;479227	479224			4	
YAHWVVSQPPDMHLK	1	Unmodified	1806.8876	0.88755978	205	O14787	TNPO2	Transportin-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	56.635	56.47	3;4	0.0002361	48506	160511_QHF_FH_JSI12i_3	45.992	41.444			1.2303	1.2458	11.575	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3496	1.2782	NaN	1	0	Median	1.1214	1.1349	13.18	2	0	Median	257760000	114500000	143260000	0	0	0	0	0	0	83920000	33948000	49971000	173840000	80548000	93292000	58318	205	54949	355016;355017;355018	479228;479229;479230;479231	479230			4	
YAHWVVSQPPDTYLK	1	Unmodified	1802.8992	0.89917033	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.84	6.08		11	3						5	4	5	6	4	65.333	62.353	2;3	6.8567E-05	55569	160511_QHF_FH_JSI10i_2	98.582	81.504			0.93583	1.0865	35.183	17	6	Median	0.93583	0.78905	35.192	3	2	Plateau	0.87293	1.0865	24.381	5	3	Median	1.158	1.1032	51.704	6	1	Median	1.3182	1.3444	23.57	3	0	Plateau	2142500000	999610000	1142900000	193190000	91790000	101400000	628560000	329740000	298830000	913630000	376420000	537210000	407080000	201670000	205410000	58319	3914	54950	355019;355020;355021;355022;355023;355024;355025;355026;355027;355028;355029;355030;355031;355032;355033;355034;355035;355036;355037	479232;479233;479234;479235;479236;479237;479238;479239;479240;479241;479242;479243;479244;479245;479246;479247;479248;479249;479250;479251;479252;479253;479254;479255;479256;479257;479258	479250			27	
YAIAVNDLGTEYVHR	0	Unmodified	1719.858	0.8580338	628	O94925	GLS	Glutaminase kidney isoform, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	62.504	61.608	3	1.446E-07	53650	160511_QHF_FH_JSI11i_2	137.8	119.2			1.0052	1.0144	17.101	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.62611	0.77037	NaN	1	0	Median	1.0052	1.0144	NaN	1	0	Median	0.96086	1.054	NaN	1	0	Median	269120000	143190000	125930000	0	0	0	71982000	45001000	26981000	113330000	55763000	57569000	83807000	42430000	41377000	58320	628	54951	355038;355039;355040	479259;479260;479261;479262;479263;479264	479262			6	
YAIHCIHAIFSSK	1	Unmodified	1545.7762	0.77621842	4988	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		60.665	50.951	4	0.00074944	27590	160513_QHF_FH_JSI11Kac_6	69.229	64.338			2.0157	1.9112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0157	1.9112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	17731000	7540300	10191000	0	0	0	0	0	0	17731000	7540300	10191000	0	0	0	58321	4988	54952	355041	479265	479265			1	
YAILNEPFK	1	Unmodified	1093.5808	0.5807963	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		62.093	61.097	2	0.00027695	52976	160511_QHF_FH_JSI11i_2	95.815	78.45			0.83346	0.86872	4.2882	3	2	Plateau	1.053	0.89691	NaN	1	1	Median	0.82022	0.91285	NaN	1	0	Median	0.83346	0.84141	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	532130000	284450000	247680000	208550000	99394000	109150000	20927000	14302000	6624700	302660000	170760000	131900000	0	0	0	58322	2578	54953	355042;355043;355044	479266;479267;479268	479268			3	
YAILNRDPNNPK	1	Unmodified	1413.7365	0.7364621	321	O43314	PPIP5K2	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				28.315	26.947	3	0.052881	21920	160511_QHF_FH_JSI9i_3	21.557	8.7902			0.96752	0.79197	NaN	1	0	Median	0.96752	0.79197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20390000	7219900	13170000	20390000	7219900	13170000	0	0	0	0	0	0	0	0	0	58323	321	54954	355045	479269	479269			1	
YAINPHLTEDQRFPQLR	0	Unmodified	2097.0756	0.075571565	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			62.256	60.739	4	0.00010672	49842	160511_QHF_FH_JSI9i_3	65.107	61.666			0.97812	0.95123	11.109	2	0	Median	1.2466	1.029	NaN	1	0	Median	0.7675	0.87936	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	119960000	67093000	52869000	70527000	35601000	34926000	49434000	31492000	17943000	0	0	0	0	0	0	58324	5414	54955	355046;355047	479270;479271;479272;479273	479273			4	
YAIQLITAASLVCR	0	Unmodified	1577.8599	0.85994805	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.162	77.9	2	1.8424E-16	43025	160513_QHF_FH_JSI11Kac_6	138.24	107.36			0.79159	0.90682	22.465	4	1	Linear	1.0806	0.92548	NaN	1	0	Median	0.75348	0.88853	NaN	1	0	Median	0.87705	0.83286	NaN	1	0	Median	1.2448	1.3698	NaN	1	1	Median	235090000	124660000	110430000	44551000	18699000	25852000	130780000	78417000	52362000	51850000	23789000	28061000	7907900	3755800	4152100	58325	5487	54956	355048;355049;355050;355051	479274;479275;479276;479277	479274			4	
YAIQLITAASLVCRK	1	Unmodified	1705.9549	0.95491107	5487	Q9Y230	RUVBL2	RuvB-like 2	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			79.991	74.35	3	0.00081446	40700	160513_QHF_FH_JSI10Kac_6	54.859	44.225			0.75789	0.90095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75789	0.90095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	214730000	136710000	78014000	0	0	0	214730000	136710000	78014000	0	0	0	0	0	0	58326	5487	54957	355052	479278	479278			1	
YAKYLPHSAGR	1	Acetyl (K)	1303.6673	0.6673199	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		36.715	27.697	3	0.00029301	15605	160513_QHF_FH_JSI10Kac_6	84.718	62.672			0.6262	0.66453	366.09	2	2	Median	NaN	NaN	NaN	0	0	Median	7.4027	8.8459	NaN	1	1	Median	0.052971	0.049922	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	215510000	146070000	69436000	0	0	0	63489000	2157300	61332000	152020000	143910000	8103900	0	0	0	58327	1594	54958	355053;355054	479279;479280	479280	1621		2	
YALIQHQK	1	Unmodified	999.55016	0.55016488	1671	P49711;Q8NI51	CTCF;CTCFL	Transcriptional repressor CTCF;Transcriptional repressor CTCFL	yes	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	14.88	14.911	2;3	2.5653E-05	12177	160511_QHF_FH_JSI11i_3	114.78	98.007			1.1784	1.1594	34.199	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91566	0.86213	1.162	2	0	Median	1.5308	1.5586	1.1035	2	0	Median	287320000	128100000	159220000	0	0	0	0	0	0	142160000	79136000	63020000	145170000	48967000	96201000	58328	1671	54959	355055;355056;355057;355058	479281;479282;479283;479284	479281			4	
YALPLVGHR	0	Unmodified	1024.5818	0.58179936	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.55	0.498		5	6							3	2	2	4	45.655	44.663	2;3	2.4932E-06	37634	160511_QHF_FH_JSI10i_3	96.253	84.884			0.91157	0.89295	16.095	9	1	Median	1.1726	0.93146	18.728	3	0	Median	0.59499	0.71122	8.3518	2	0	Median	0.87973	0.87052	3.5978	2	0	Median	0.9337	0.97331	4.5351	2	1	Median	1918500000	948840000	969620000	622890000	286910000	335980000	372270000	220490000	151790000	440160000	204300000	235860000	483140000	237150000	245990000	58329	1034	54960	355059;355060;355061;355062;355063;355064;355065;355066;355067;355068;355069	479285;479286;479287;479288;479289;479290;479291;479292;479293;479294;479295;479296;479297;479298;479299;479300;479301;479302;479303;479304	479290			20	
YALQMEQLNGILLHLESELAQTR	0	Oxidation (M)	2685.3796	0.37960066	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		96.413	88.349	3	1.1914E-89	49569	160513_QHF_FH_JSI11Kac_6	219.38	206.95			1.0224	0.97332	10.402	3	0	Plateau	1.323	1.1529	NaN	1	0	Median	0.9644	1.1496	NaN	1	0	Median	1.0224	0.96147	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1004800000	482730000	522030000	296310000	123920000	172390000	323270000	153860000	169410000	385170000	204950000	180230000	0	0	0	58330	842	54961	355070;355071;355072	479305;479306;479307	479305		364	3	
YALQMEQLNGILLHLESELAQTR	0	Unmodified	2669.3847	0.38468604	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	2	2	1	1	99.805	94.167	3	3.8674E-107	50961	160513_QHF_FH_JSI11Kac_6	235.95	215.19			1.2741	1.1852	12.888	6	2	Median	1.3169	1.1245	11.473	2	1	Median	0.9262	1.1126	4.8845	2	1	Median	1.357	1.2739	NaN	1	0	Median	1.4217	1.4803	NaN	1	0	Median	9483500000	4311100000	5172400000	2479700000	1095500000	1384200000	3428900000	1758600000	1670300000	1818500000	805060000	1013400000	1756400000	651900000	1104500000	58331	842	54961	355073;355074;355075;355076;355077;355078	479308;479309;479310;479311;479312;479313	479308			6	
YALQSQQR	0	Unmodified	992.50394	0.50394297	1545	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.48	2	3	1				1	4		2	3	4	2	15.496	11.236	2	0.0014339	10332	160511_QHF_FH_JSI9i_2	89.55	62.025			0.86713	0.98373	14.97	11	1	Median	1.1326	0.96235	13.307	2	0	Median	0.82517	1.0093	1.7625	3	0	Plateau	0.99479	0.99184	25.687	4	1	Median	0.8581	0.9279	0.78129	2	0	Median	1294600000	612450000	682190000	204720000	89090000	115630000	467380000	246970000	220420000	611630000	270840000	340790000	10913000	5557700	5354900	58332	1545	54962	355079;355080;355081;355082;355083;355084;355085;355086;355087;355088;355089	479314;479315;479316;479317;479318;479319;479320;479321;479322;479323;479324	479317			11	
YALSVGYR	0	Unmodified	927.48142	0.48141661	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.37		1	2					1	4	2	2	2	2	46.994	39.961	2	1.6695E-10	22017	160513_QHF_FH_JSI10Kac_6	149.4	97.827			1.0793	1.0792	14.449	7	1	Median	1.3145	1.0869	12.251	2	0	Median	0.97776	1.155	9.6054	2	0	Median	1.27	1.194	25.354	2	0	Median	0.89473	0.9562	NaN	1	1	Median	549420000	255960000	293460000	49838000	22378000	27460000	218500000	110720000	107790000	237310000	99038000	138270000	43768000	23824000	19944000	58333	1054	54963	355090;355091;355092;355093;355094;355095;355096;355097	479325;479326;479327;479328;479329;479330;479331	479331			7	
YALTGDEVK	1	Unmodified	994.49713	0.49712625	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.73	6.31	7					3	5			2	5	4	4	34.229	29.599	1;2	1.6335E-06	25810	160511_QHF_FH_JSI9i_1	131.06	96.254			0.90563	1.022	18.402	13	2	Median	1.1173	0.92267	26.335	2	0	Median	0.8594	1.0273	13.626	4	1	Median	0.95148	0.93347	25.874	3	1	Median	0.88848	0.92756	18.983	4	0	Median	7859100000	4034000000	3825100000	1337900000	703210000	634730000	2204100000	1160200000	1043900000	1759600000	874190000	885380000	2557500000	1296400000	1261100000	58334	2013;1204	54964	355098;355099;355100;355101;355102;355103;355104;355105;355106;355107;355108;355109;355110;355111;355112	479332;479333;479334;479335;479336;479337;479338;479339;479340;479341;479342;479343;479344;479345;479346;479347;479348;479349	479343			17	
YALTGDEVKK	2	Unmodified	1122.5921	0.59208927	2013;1204	P62701;Q8TD47;P22090	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	5.82	3	12	9				3	8		8	10	9	8	25.872	22.401	2;3	1.1133E-06	19259	160511_QHF_FH_JSI10i_2	120.99	103.75			1.0291	1.0602	71.47	35	26	Median	0.95522	0.80427	77.167	8	7	Median	0.71753	0.8337	71.707	10	8	Median	1.9245	1.8978	77.564	9	7	Median	1.0248	1.0316	57.181	8	4	Median	8805600000	3715300000	5090300000	2405600000	792320000	1613300000	2829600000	1425100000	1404600000	2547000000	993670000	1553400000	1023300000	504280000	519030000	58335	2013;1204	54965	355113;355114;355115;355116;355117;355118;355119;355120;355121;355122;355123;355124;355125;355126;355127;355128;355129;355130;355131;355132;355133;355134;355135;355136;355137;355138;355139;355140;355141;355142;355143;355144;355145;355146;355147	479350;479351;479352;479353;479354;479355;479356;479357;479358;479359;479360;479361;479362;479363;479364;479365;479366;479367;479368;479369;479370;479371;479372;479373;479374;479375;479376;479377;479378;479379;479380;479381;479382;479383;479384;479385;479386;479387	479382			38	
YALTTTLSAR	0	Unmodified	1095.5924	0.59242362	4834	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.6	6.47		2	1					1	1		2	1	2	48.905	44.331	2	0.0019904	37874	160511_QHF_FH_JSI12i_3	62.558	53.695			0.8713	1.0518	27.524	5	1	Median	NaN	NaN	NaN	0	0	Median	0.78898	0.96795	11.746	2	1	Median	1.087	1.0595	NaN	1	0	Median	1.0296	1.1026	52.131	2	0	Median	539010000	239140000	299870000	0	0	0	180460000	93456000	87008000	23484000	11286000	12198000	335060000	134400000	200660000	58336	4834	54966	355148;355149;355150;355151;355152	479388;479389;479390;479391;479392;479393	479393			6	
YALVWGTSTK	1	Unmodified	1124.5866	0.58660996	1843	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		12.5	6.06		1							3	1	2	1		61.248	54.279	2	8.314E-06	28844	160513_QHF_FH_JSI9Kac_6	108.98	84.202			1.0154	0.99046	16.412	4	0	Median	1.0327	0.88541	NaN	1	0	Median	0.97491	1.1642	12.219	2	0	Median	0.99848	0.91866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	298430000	134370000	164060000	53904000	27535000	26369000	184550000	77242000	107300000	59984000	29597000	30387000	0	0	0	58337	1843	54967	355153;355154;355155;355156	479394;479395;479396;479397;479398;479399	479397			5	
YALYDASFETK	1	Unmodified	1306.6081	0.60813326	1925	P60981	DSTN	Destrin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							4	3	3	2	57.857	56.943	2	1.7725E-18	51734	160511_QHF_FH_JSI11i_1	166.19	149.98			0.99674	0.96696	17.553	12	4	Median	1.1234	0.91504	14.781	4	2	Median	0.97151	1.117	20.876	3	1	Median	1.0226	0.98446	22.928	3	1	Median	0.86455	0.93661	9.2133	2	0	Median	6466200000	3167700000	3298500000	1240800000	572760000	668020000	1639400000	823700000	815660000	1885800000	903270000	982490000	1700300000	867950000	832360000	58338	1925	54968	355157;355158;355159;355160;355161;355162;355163;355164;355165;355166;355167;355168	479400;479401;479402;479403;479404;479405;479406;479407;479408;479409;479410;479411;479412;479413;479414;479415;479416;479417;479418;479419;479420;479421	479402			22	
YALYDATYETK	1	Unmodified	1336.6187	0.61869795	1236;5500	P23528;Q9Y281	CFL1;CFL2	Cofilin-1;Cofilin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.79	6.51	7	4	4		1	1	3	4	4	6	9	7	6	51.64	46.531	2	3.1332E-38	41804	160511_QHF_FH_JSI9i_1	208.25	182.69			0.99639	1.0212	20.548	28	5	Median	1.094	0.97437	23.569	6	1	Median	0.85402	1.0177	26.245	9	2	Median	0.9712	0.96614	20.638	7	2	Median	1.0359	1.0557	7.0784	6	0	Median	53196000000	26587000000	26609000000	8442600000	4567400000	3875300000	19409000000	9831700000	9576900000	16258000000	7932400000	8325800000	9086600000	4256100000	4830600000	58339	1236;5500	54969	355169;355170;355171;355172;355173;355174;355175;355176;355177;355178;355179;355180;355181;355182;355183;355184;355185;355186;355187;355188;355189;355190;355191;355192;355193;355194;355195;355196	479422;479423;479424;479425;479426;479427;479428;479429;479430;479431;479432;479433;479434;479435;479436;479437;479438;479439;479440;479441;479442;479443;479444;479445;479446;479447;479448;479449;479450;479451;479452;479453;479454;479455;479456;479457;479458;479459;479460;479461;479462;479463;479464;479465;479466;479467;479468;479469;479470;479471;479472;479473;479474;479475;479476;479477;479478;479479;479480;479481;479482;479483;479484;479485;479486;479487;479488;479489;479490;479491;479492;479493;479494;479495;479496;479497;479498	479467			77	
YAMAWGVVER	0	Unmodified	1180.5699	0.56991404	2118	P83111	LACTB	Serine beta-lactamase-like protein LACTB, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			67.774	60.013	2	0.0044456	32912	160513_QHF_FH_JSI10Kac_6	63.419	49.416			0.82209	0.96884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82209	0.96884	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16732000	9088900	7642900	0	0	0	16732000	9088900	7642900	0	0	0	0	0	0	58340	2118	54970	355197	479499;479500	479499			2	
YAMEQSIK	1	Unmodified	968.46372	0.46371763	5315	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.67	0.471	2	4								3	2		1	25.615	24.66	2	7.6752E-05	20561	160511_QHF_FH_JSI12i_2	132.57	105.96			0.57339	0.89571	53.845	6	1	Linear	1.0552	0.85891	71.896	3	1	Median	0.90833	1.0923	59.854	2	0	Median	NaN	NaN	NaN	0	0	Median	0.86361	0.93408	NaN	1	0	Median	1071800000	560230000	511560000	428650000	184660000	243990000	411150000	242360000	168800000	0	0	0	231980000	133210000	98774000	58341	5315	54971	355198;355199;355200;355201;355202;355203	479501;479502;479503;479504;479505;479506;479507;479508;479509	479501			9	
YAMMFAELK	1	Unmodified	1102.5191	0.51912402	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		77.084	67.759	2	0.0032869	36989	160513_QHF_FH_JSI11Kac_6	80.165	64.726			2.1337	2.0537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1337	2.0537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	71386000	26827000	44559000	0	0	0	0	0	0	71386000	26827000	44559000	0	0	0	58342	3290	54972	355204	479510	479510			1	
YAMPSSTPLYHNAIK	1	Unmodified	1691.8341	0.83412723	3330	Q86UU0	BCL9L	B-cell CLL/lymphoma 9-like protein	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	2	0		3									1	1	1	51.427	50.471	3	0.022722	44439	160511_QHF_FH_JSI10i_2	18.321	13.852			2.2527	2.3063	20.313	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.3183	1.5817	NaN	1	0	Median	2.2527	2.3063	NaN	1	0	Median	1.8917	2.1769	NaN	1	0	Median	267710000	108790000	158920000	0	0	0	63383000	40739000	22645000	138070000	37190000	100880000	66252000	30858000	35394000	58343	3330	54973	355205;355206;355207	479511	479511			1	
YAMVYGYNAAYNR	0	Oxidation (M)	1570.6875	0.68746299	902	P08493	MGP	Matrix Gla protein	yes	yes	0	0	1	0			By MS/MS		16	0									1			1		49.331	39.629	2	0.036548	21554	160513_QHF_FH_JSI11Kac_6	51.727	36.755			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	881460	0	881460	0	0	0	0	0	0	881460	0	881460	0	0	0	58344	902	54974	355208	479512	479512			1	
YAMVYGYNAAYNR	0	Unmodified	1554.6925	0.69254837	902	P08493	MGP	Matrix Gla protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		59.273	50.174	2	1.2914E-16	27697	160513_QHF_FH_JSI10Kac_6	141.48	131.53			1.2633	1.346	17.253	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0155	1.1914	NaN	1	0	Median	1.5715	1.5207	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37402000	14853000	22549000	4755200	0	4755200	23936000	12118000	11818000	8710300	2735500	5974800	0	0	0	58345	902	54974	355209;355210;355211;355212	479513;479514;479515;479516;479517;479518	479517			6	
YANEVNSDAGAFK	1	Unmodified	1384.6259	0.62590859	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.46	4						5			1	3	3	2	35.649	30.461	2	3.3564E-22	27748	160511_QHF_FH_JSI12i_1	176.42	163.9			0.97342	1.0205	34.253	8	5	Median	1.0786	0.90113	NaN	1	0	Median	0.80419	0.94743	21.567	2	1	Median	1.2206	1.1803	57.278	3	3	Median	0.94969	1.0245	11.629	2	1	Median	879820000	419490000	460330000	208470000	79602000	128860000	280220000	152570000	127640000	181180000	84279000	96903000	209950000	103040000	106920000	58346	5295	54975	355213;355214;355215;355216;355217;355218;355219;355220;355221	479519;479520;479521;479522;479523;479524;479525;479526;479527;479528;479529;479530;479531	479521			13	
YANMWLEYYNLER	0	Unmodified	1763.7977	0.79774172	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	1	2	2	2	86.458	81.459	2	1.0598E-40	41957	160513_QHF_FH_JSI11Kac_6	199.7	176.32			1.139	1.1316	17.147	7	3	Median	1.139	0.95737	NaN	1	0	Median	0.84104	0.99606	18.04	2	1	Median	1.2936	1.2728	10.712	2	1	Median	0.99506	1.0731	22.552	2	1	Median	439460000	224480000	214990000	59332000	24499000	34833000	174230000	103440000	70790000	107940000	47304000	60640000	97954000	49228000	48725000	58347	2604	54976	355222;355223;355224;355225;355226;355227;355228	479532;479533;479534;479535;479536;479537;479538;479539	479533			7	
YANMWLEYYNLER	0	Oxidation (M)	1779.7927	0.79265635	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	81.251	71.809	2	2.8053E-06	38039	160513_QHF_FH_JSI12Kac_6	128.28	122.04			0.89854	0.96175	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89854	0.96175	NaN	1	1	Median	29725000	15615000	14109000	0	0	0	0	0	0	0	0	0	29725000	15615000	14109000	58348	2604	54976	355229	479540;479541	479540		2046	2	
YANNLTQLDNGVR	0	Unmodified	1476.7321	0.732105	3920	Q92995	USP13	Ubiquitin carboxyl-terminal hydrolase 13	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		44.647	43.918	2	2.4802E-05	37733	160511_QHF_FH_JSI11i_2	83	67.109			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58349	3920	54977	355230;355231	479542;479543	479542			2	
YANNSNYK	1	Unmodified	972.43011	0.43010932	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	2	4	2	7.2775	6.2594	2	0.00063924	4644	160511_QHF_FH_JSI10i_1	101.6	97.244			1.0123	1.0243	15.958	11	0	Median	1.3909	1.1837	30.364	3	0	Median	0.86092	1.028	4.1663	2	0	Median	1.0292	1.012	12.996	4	0	Median	0.90863	0.99588	9.8275	2	0	Median	2272100000	1059800000	1212300000	427560000	162640000	264920000	544140000	275070000	269070000	684660000	295310000	389350000	615750000	326780000	288970000	58350	1952;3963	54978	355232;355233;355234;355235;355236;355237;355238;355239;355240;355241;355242	479544;479545;479546;479547;479548;479549;479550;479551;479552;479553;479554;479555;479556;479557;479558;479559;479560	479550			17	
YANVIAYDHSR	0	Unmodified	1307.6258	0.62584901	971;2390	Q13332;P10586	PTPRS;PTPRF	Receptor-type tyrosine-protein phosphatase S;Receptor-type tyrosine-protein phosphatase F	no	no	0	0	0	0	By MS/MS	By matching			2	0		2								1	1			26.931	25.96	3	0.04061	22381	160511_QHF_FH_JSI9i_2	40.516	10.18			0.51882	0.53053	20.042	2	0	Median	0.54344	0.46043	NaN	1	0	Median	0.49532	0.6113	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155310000	86350000	68956000	54696000	22407000	32289000	100610000	63943000	36667000	0	0	0	0	0	0	58351	2390;971	54979	355243;355244	479561	479561			0	
YAPAEGNR	0	Unmodified	876.40898	0.40897995	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	7.92	7.4853	2	0.0025205	5235	160511_QHF_FH_JSI11i_2	79.469	46.998			1.032	1.0661	16.834	4	1	Median	1.0085	0.84526	NaN	1	0	Median	0.79585	0.96695	NaN	1	0	Median	1.1915	1.2054	NaN	1	0	Median	1.0561	1.1753	NaN	1	1	Median	294660000	163830000	130840000	62152000	28624000	33528000	49117000	31816000	17302000	109970000	62835000	47133000	73426000	40551000	32874000	58352	4259	54980	355245;355246;355247;355248	479562;479563;479564	479563			3	
YAPENLDEQIK	1	Unmodified	1318.6405	0.64049603	4777	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	43.187	42.53	2	6.8364E-10	37591	160511_QHF_FH_JSI9i_1	138.08	114.73			0.541	0.55158	66.26	4	1	Median	1.9588	1.6115	NaN	1	0	Median	0.29235	0.34035	NaN	1	1	Median	0.51258	0.49745	NaN	1	0	Median	0.57101	0.6116	NaN	1	0	Median	704850000	439670000	265170000	122010000	45037000	76974000	148930000	94517000	54414000	167670000	126540000	41129000	266230000	173580000	92655000	58353	4777	54981	355249;355250;355251;355252	479565;479566;479567;479568;479569	479569			5	
YAPGDAVEK	1	Unmodified	948.45526	0.45526144	4623	Q9H0A0	NAT10	N-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	19.039	18.416	2	0.00059589	15821	160511_QHF_FH_JSI10i_1	77.732	52.809			0.87808	0.92427	14.634	3	1	Plateau	1.4614	1.1908	NaN	1	1	Median	0.81829	0.96465	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87808	0.89879	NaN	1	0	Median	363500000	194890000	168600000	133120000	69923000	63194000	113340000	61774000	51567000	0	0	0	117040000	63196000	53844000	58354	4623	54982	355253;355254;355255;355256;355257	479570;479571;479572;479573;479574;479575	479572			6	
YAPLGWSK	1	Unmodified	920.4756	0.47560295	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		3	0			2							1		1		45.788	44.983	2	0.0013672	39520	160511_QHF_FH_JSI11i_3	85.212	53.922			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58355	2517	54983	355258;355259	479576;479577	479576			2	
YAPLGWSKK	2	Acetyl (K)	1090.5811	0.58113065	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.129	51.416	2	0.021034	27889	160513_QHF_FH_JSI11Kac_6	65.305	32.465			0.17903	0.17467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.17903	0.17467	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5198800	4715400	483420	0	0	0	0	0	0	5198800	4715400	483420	0	0	0	58356	2517	54984	355260	479578	479578	2511		1	
YAPLHLVPLIER	0	Unmodified	1419.8238	0.82382054	3229;4066	Q7L576;Q96F07	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	3	2	2	77.418	76.727	2;3	5.7456E-06	68231	160511_QHF_FH_JSI11i_3	90.614	86.752			0.84612	0.85365	19.692	9	2	Median	1.3363	1.1266	29.877	2	1	Median	0.70635	0.81568	5.7205	3	0	Plateau	1.0388	0.98545	7.9278	2	1	Median	0.76852	0.8001	9.1614	2	0	Median	428440000	224810000	203630000	61626000	29517000	32108000	92120000	51936000	40183000	152510000	78096000	74417000	122180000	65258000	56925000	58357	3229;4066	54985	355261;355262;355263;355264;355265;355266;355267;355268;355269	479579;479580;479581;479582;479583;479584;479585;479586;479587;479588;479589;479590;479591;479592;479593;479594;479595;479596;479597	479580			19	
YAPLSFR	0	Unmodified	852.44939	0.4493882	5274	Q9UEU0	VTI1B	Vesicle transport through interaction with t-SNAREs homolog 1B	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			46.678	45.116	2	0.013218	37682	160511_QHF_FH_JSI10i_3	71.141	7.854			0.76348	0.84894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76348	0.84894	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30589000	15345000	15243000	0	0	0	30589000	15345000	15243000	0	0	0	0	0	0	58358	5274	54986	355270	479598	479598			1	
YAPSEAGLHEMDIR	0	Unmodified	1587.7351	0.73514147	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.74	6.04	2	8	4					1	4	5	4	6	4	49.768	46.832	2;3	2.081E-21	40186	160511_QHF_FH_JSI12i_2	197.31	168.59			0.88515	0.95187	10.876	17	1	Median	1.2654	1.0676	16.906	4	1	Median	0.7588	0.819	7.9942	4	0	Linear	1.0167	0.95187	8.3195	5	0	Median	0.8159	0.89478	9.8265	4	0	Median	7360500000	3913500000	3447000000	1040100000	508780000	531350000	1534600000	886680000	647960000	3437100000	1750200000	1686900000	1348700000	767900000	580780000	58359	1192	54987	355271;355272;355273;355274;355275;355276;355277;355278;355279;355280;355281;355282;355283;355284;355285;355286;355287;355288;355289	479599;479600;479601;479602;479603;479604;479605;479606;479607;479608;479609;479610;479611;479612;479613;479614;479615;479616;479617;479618;479619;479620;479621;479622;479623;479624;479625	479602			27	
YAPSEAGLHEMDIR	0	Oxidation (M)	1603.7301	0.73005609	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	1	0			By MS/MS		2	0		1										1		33.731	33.32	3	0.0455	28250	160511_QHF_FH_JSI11i_2	32.127	26.743			0.94908	0.95743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94908	0.95743	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114990000	58491000	56497000	0	0	0	0	0	0	114990000	58491000	56497000	0	0	0	58360	1192	54987	355290	479626	479626			1	
YAPSGFYIASGDVSGK	1	Unmodified	1617.7675	0.76748745	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.38	6.11	10	6	1				1	6		8	5	7	4	65.261	61.604	2;3	1.8422E-07	55784	160511_QHF_FH_JSI10i_1	141.37	129.73			0.9448	0.87816	22.625	24	14	Median	1.0148	0.85379	24.882	8	6	Median	0.74119	0.88162	11.223	5	2	Median	0.94295	0.91369	31.115	7	5	Median	0.89203	0.98777	14.155	4	1	Median	2989900000	1514300000	1475600000	701000000	354440000	346560000	702520000	376600000	325920000	1096100000	515450000	580700000	490260000	267820000	222440000	58361	472	54988	355291;355292;355293;355294;355295;355296;355297;355298;355299;355300;355301;355302;355303;355304;355305;355306;355307;355308;355309;355310;355311;355312;355313;355314	479627;479628;479629;479630;479631;479632;479633;479634;479635;479636;479637;479638;479639;479640;479641;479642;479643;479644;479645;479646;479647;479648;479649;479650;479651;479652;479653;479654;479655;479656	479638			30	
YAPSYYHVMPK	1	Unmodified	1354.638	0.63799361	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	39.735	39.637	3	0.00015371	34815	160511_QHF_FH_JSI11i_3	82.171	73.572			0.89466	0.85684	12.081	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0231	0.93326	NaN	1	1	Median	0.78237	0.78668	NaN	1	1	Median	127880000	60955000	66928000	0	0	0	0	0	0	71051000	36257000	34793000	56833000	24698000	32134000	58362	3133	54989	355315;355316	479657;479658	479657			2	
YAPTEAQLNAVDALIDSMSLAK	1	Unmodified	2320.1621	0.16206289	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.81	0.726	6	7	3							2	4	4	6	102.34	102.26	2;3	1.1918E-162	88162	160511_QHF_FH_JSI12i_2	372.91	337.39			0.86214	0.91261	14.665	16	3	Median	1.0895	0.91415	13.061	2	0	Median	0.7688	0.92262	7.0949	4	1	Median	0.88473	0.85209	6.4842	4	1	Median	0.82185	0.88778	22.932	6	1	Median	3907800000	2016400000	1891300000	853420000	358240000	495190000	932260000	516220000	416040000	1304700000	699580000	605130000	817360000	442390000	374970000	58363	1024	54990	355317;355318;355319;355320;355321;355322;355323;355324;355325;355326;355327;355328;355329;355330;355331;355332	479659;479660;479661;479662;479663;479664;479665;479666;479667;479668;479669;479670;479671;479672;479673;479674;479675;479676;479677;479678;479679;479680;479681	479661			23	
YAPTEVGLHEMHIK	1	Unmodified	1623.8079	0.80791248	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							1	2	4	2	48.143	47.515	3;4	1.105E-15	42054	160511_QHF_FH_JSI10i_2	141.32	133.94			1.1042	0.98876	18.919	9	1	Median	1.1042	0.95308	NaN	1	0	Median	0.76095	0.91952	10.268	2	0	Median	1.0463	1.0283	18.868	4	1	Median	1.2416	1.3369	8.2974	2	0	Median	1005500000	507730000	497790000	97176000	43107000	54069000	198650000	96453000	102200000	505730000	270320000	235410000	203970000	97850000	106120000	58364	512	54991	355333;355334;355335;355336;355337;355338;355339;355340;355341	479682;479683;479684;479685;479686;479687;479688;479689;479690;479691	479690			10	
YAPTIAPSPEDGFEVQPLHPDK	1	Unmodified	2407.1696	0.16959111	1614	P48067	SLC6A9	Sodium- and chloride-dependent glycine transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	1	2	1	73.969	73.324	3	3.5519E-07	63296	160511_QHF_FH_JSI12i_2	80.303	71.703			0.83712	0.84751	58.394	5	0	Median	1.2193	1.0349	NaN	1	0	Median	0.24282	0.29437	NaN	1	0	Median	0.5546	0.54981	61.197	2	0	Median	0.83712	0.90721	NaN	1	0	Median	265120000	151050000	114070000	29663000	13015000	16648000	66612000	47403000	19208000	124760000	66466000	58297000	44088000	24169000	19919000	58365	1614	54992	355342;355343;355344;355345;355346	479692;479693;479694;479695;479696;479697;479698	479693			7	
YAPVAKDLASR	1	Acetyl (K)	1231.6561	0.65608651	1367	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.5	0.5							3	3		1	1	2	2	52.876	42.275	2	0.0028338	23397	160513_QHF_FH_JSI11Kac_5	74.162	57.136			0.72008	0.77243	39.619	6	0	Median	1.1431	0.93626	NaN	1	0	Median	0.8859	1.0477	NaN	1	0	Median	0.4307	0.42102	5.0509	2	0	Median	0.72008	0.77243	3.7654	2	0	Median	44688000	28123000	16566000	2325600	965690	1359900	7419000	3805500	3613400	24361000	16417000	7943900	10583000	6934400	3648300	58366	1367	54993	355347;355348;355349;355350;355351;355352	479699;479700;479701;479702;479703	479703	1304		5	
YAQAGFEGFK	1	Unmodified	1116.524	0.52400971	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	4.21	3	4	1					1		1	3	3	2	44.863	42.905	2	1.1434E-09	37636	160511_QHF_FH_JSI10i_2	135.79	126.2			0.99083	1.0911	22.132	9	2	Median	1.3208	1.1361	NaN	1	0	Median	0.87294	1.0779	36.318	3	1	Median	1.0094	0.99634	10.625	3	0	Plateau	1.0473	1.1237	4.1609	2	1	Median	1254200000	620990000	633250000	191130000	82971000	108160000	310700000	157460000	153240000	433160000	212030000	221130000	319240000	168530000	150710000	58367	552	54994	355353;355354;355355;355356;355357;355358;355359;355360;355361	479704;479705;479706;479707;479708;479709;479710;479711;479712;479713;479714;479715;479716;479717;479718	479717			15	
YAQDEHLITFFVPVFEPLPPQYFIR	0	Unmodified	3065.5691	0.56911599	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	98.383	90.801	3	2.1425E-15	48934	160513_QHF_FH_JSI12Kac_6	117.51	106.09			0.7714	0.85484	4.7674	2	1	Median	NaN	NaN	NaN	0	0	Median	0.76466	0.88415	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77819	0.8265	NaN	1	1	Median	311020000	182480000	128540000	0	0	0	179090000	83987000	95102000	0	0	0	131930000	98494000	33437000	58368	552	54995	355362;355363	479719;479720	479719			2	
YAQGADSVEPMFR	0	Unmodified	1469.6609	0.66091389	5381;5387	Q9UKV8;Q9UL18	AGO2;AGO1	Protein argonaute-2;Protein argonaute-1	no	no	0	0	0	0		By MS/MS	By MS/MS	By matching	1.67	0.471	2	4									2	3	1	50.044	49.338	2	0.0001143	44576	160511_QHF_FH_JSI11i_1	89.805	77.939			0.91503	1.0814	28.998	6	2	Median	NaN	NaN	NaN	0	0	Median	0.90251	1.0814	10.616	2	0	Median	0.83972	0.83674	34.373	3	2	Median	1.1664	1.3316	NaN	1	0	Median	289190000	148190000	141000000	0	0	0	82391000	40794000	41597000	158530000	84380000	74145000	48270000	23014000	25256000	58369	5381;5387	54996	355364;355365;355366;355367;355368;355369	479721;479722;479723;479724;479725	479721			5	
YAQICYWIK	1	Unmodified	1243.606	0.6059652	643	O95084	PRSS23	Serine protease 23	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	75.221	65.779	2	0.00018543	34464	160513_QHF_FH_JSI12Kac_6	93.992	79.054			1.5141	1.6053	43.575	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5141	1.6053	43.575	2	2	Median	42139000	17491000	24648000	0	0	0	0	0	0	0	0	0	42139000	17491000	24648000	58370	643	54997	355370;355371;355372;355373	479726;479727;479728;479729	479728			4	
YAQPATATAATAAAAAAAAYSDGYGR	0	Unmodified	2431.1404	0.14041625	314	O43251	RBFOX2	RNA binding protein fox-1 homolog 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	80.649	80.131	3	5.413E-16	73024	160511_QHF_FH_JSI12i_1	81.151	73.347			0.92397	0.95184	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92397	0.95184	NaN	1	1	Median	71296000	43496000	27800000	0	0	0	0	0	0	0	0	0	71296000	43496000	27800000	58371	314	54998	355374;355375;355376	479730;479731;479732	479730			3	
YAQVKPDGTYVK	2	Unmodified	1367.7085	0.70851601	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	2	0		3										2	1	24.689	24.034	2	0.0040606	19971	160511_QHF_FH_JSI11i_2	94.297	78.635			0.57955	0.61549	87.606	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9789	0.99388	117.55	2	2	Median	0.57955	0.61549	NaN	1	1	Median	52387000	29891000	22497000	0	0	0	0	0	0	39381000	19920000	19461000	13006000	9970500	3035600	58372	2624	54999	355377;355378;355379	479733;479734;479735	479735			3	
YAQVKPDGTYVK	2	Acetyl (K)	1409.7191	0.7190807	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	47.429	38.487	2	0.016587	21085	160513_QHF_FH_JSI12Kac_3	59.757	52.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	970830	0	970830	0	0	0	0	0	0	0	0	0	970830	0	970830	58373	2624	54999	355380	479736	479736	2588;2589		1	
YAQVKPDGTYVKPLSNK	3	Acetyl (K)	1949.0258	0.025827405	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	0.737							3	4	2	2	3	2	2	55.967	45.675	3	3.6929E-05	23409	160513_QHF_FH_JSI12Kac_5	100.35	83.414			0.96256	0.94449	21.219	8	0	Median	0.85039	0.72713	14.393	2	0	Median	0.89964	1.0755	26.723	2	0	Median	0.96147	0.94449	7.8669	2	0	Median	1.0055	1.0979	3.4024	2	0	Median	217230000	109530000	107700000	33006000	16571000	16435000	58424000	33025000	25399000	68237000	32548000	35688000	57566000	27388000	30178000	58374	2624	55000	355381;355382;355383;355384;355385;355386;355387;355388;355389	479737;479738;479739;479740;479741;479742;479743;479744;479745	479742	2588;2589		8	
YASENHLSR	0	Unmodified	1075.5047	0.50467125	1349	P30408	TM4SF1	Transmembrane 4 L6 family member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.82	5.19		8	6						3	3	5	4	5	7.917	6.4319	2;3	1.2613E-06	5368	160511_QHF_FH_JSI10i_2	103.26	88.582			0.84314	0.87474	24.214	17	0	Median	1.3064	1.0833	5.3411	3	0	Plateau	0.72586	0.88707	35.165	5	0	Median	0.87536	0.85597	4.0464	4	0	Median	0.68836	0.69231	12.474	5	0	Median	5082500000	2136200000	2946300000	575760000	205470000	370290000	1022500000	429700000	592800000	2108400000	808380000	1300000000	1375900000	692640000	683230000	58375	1349	55001	355390;355391;355392;355393;355394;355395;355396;355397;355398;355399;355400;355401;355402;355403;355404;355405;355406	479746;479747;479748;479749;479750;479751;479752;479753;479754;479755;479756;479757;479758;479759;479760;479761;479762;479763;479764;479765;479766	479760			21	
YASENVNK	1	Unmodified	923.43486	0.43486035	2020;4642	Q9H0U4;P62820	RAB1B;RAB1A	Ras-related protein Rab-1B;Ras-related protein Rab-1A	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.12	4	5				2	1			2	3	3	4	8.0702	5.9072	2	0.00028448	5191	160511_QHF_FH_JSI12i_1	113.41	52.613			0.94841	0.92877	62.637	12	7	Median	1.4273	1.1997	31.428	2	1	Median	0.77401	0.89794	104.93	3	2	Median	0.73148	0.71941	73.25	3	1	Plateau	0.972	1.048	53.672	4	3	Median	6265800000	2975900000	3289900000	1652200000	674130000	978060000	1579400000	823310000	756040000	1642200000	733400000	908770000	1392100000	745090000	647050000	58376	4642;2020	55002	355407;355408;355409;355410;355411;355412;355413;355414;355415;355416;355417;355418	479767;479768;479769;479770;479771;479772;479773;479774;479775;479776;479777;479778;479779;479780;479781;479782;479783	479772			17	
YASETLQAQSEEARR	0	Unmodified	1737.8282	0.82819023	5408	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			20.91	20.09	3	0.028812	17297	160511_QHF_FH_JSI10i_2	27.58	16.309			1.0705	1.3091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0705	1.3091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43865000	26582000	17283000	0	0	0	43865000	26582000	17283000	0	0	0	0	0	0	58377	5408	55003	355419	479784	479784			1	
YASFQVENDQER	0	Unmodified	1484.6532	0.65318598	1814	P53992	SEC24C	Protein transport protein Sec24C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								3	3	2	3	32.387	31.654	2	2.8895E-32	28414	160511_QHF_FH_JSI11i_1	196.48	178.17			1.073	1.1008	20.254	9	5	Median	1.2062	0.9938	NaN	1	0	Median	0.96783	1.1655	21.526	3	2	Median	1.339	1.3123	32.944	2	1	Median	1.0527	1.1008	18.428	3	2	Median	1011800000	522550000	489290000	121490000	50513000	70974000	280590000	146880000	133710000	196100000	100620000	95479000	413660000	224540000	189120000	58378	1814	55004	355420;355421;355422;355423;355424;355425;355426;355427;355428;355429;355430	479785;479786;479787;479788;479789;479790;479791;479792;479793;479794;479795;479796;479797;479798;479799;479800	479786			16	
YASICQQNGIVPIVEPEILPDGDHDLK	1	Unmodified	3019.4961	0.49608698	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4									5	4	1	105.85	105.77	3	6.5269E-10	91216	160511_QHF_FH_JSI10i_1	71.974	65.315			0.88648	0.89629	26.153	8	5	Median	NaN	NaN	NaN	0	0	Median	0.83947	0.8752	30.317	4	2	Median	0.92835	0.90625	25.88	4	3	Median	NaN	NaN	NaN	0	0	Median	133420000	82463000	50955000	0	0	0	90651000	55136000	35515000	42767000	27328000	15440000	0	0	0	58379	803;944	55005	355431;355432;355433;355434;355435;355436;355437;355438;355439;355440	479801;479802;479803;479804;479805;479806;479807;479808;479809;479810	479803			10	
YASICQQNGIVPIVEPEILPDGDHDLKR	1	Acetyl (K)	3217.6078	0.60776269	803;944	P04075;P09972	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	no	no	1	0	0	1			By MS/MS		16	0									1			1		86.748	77.424	3	9.6263E-21	43058	160513_QHF_FH_JSI11Kac_6	156.92	139.56			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	73737000	73737000	0	0	0	0	0	0	0	73737000	73737000	0	0	0	0	58380	803;944	55006	355441	479811	479811	433		1	
YASNAVSEALIR	0	Unmodified	1292.6725	0.67246486	5393	Q9ULA0	DNPEP	Aspartyl aminopeptidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	49.864	48.872	2	0.0021805	42134	160511_QHF_FH_JSI11i_2	57.149	41.267			0.35808	0.35111	36.777	3	1	Plateau	0.38382	0.32747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.34911	0.35111	NaN	1	0	Median	0.59449	0.6393	NaN	1	1	Median	206410000	135130000	71275000	76631000	53509000	23122000	0	0	0	86142000	58577000	27565000	43633000	23045000	20589000	58381	5393	55007	355442;355443;355444	479812;479813	479813			2	
YASPEMCFVFSDR	0	Unmodified	1607.6748	0.6748494	1359	P30566	ADSL	Adenylosuccinate lyase	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.263	74.003	2	0.061679	63871	160511_QHF_FH_JSI12i_2	42.395	35.862			1.4322	1.6238	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4322	1.6238	NaN	1	1	Median	9654000	3683800	5970200	0	0	0	0	0	0	0	0	0	9654000	3683800	5970200	58382	1359	55008	355445	479814	479814			1	
YASSANLHLPK	1	Unmodified	1199.6299	0.62987176	61	CON__P34955			yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	32.641	32.594	2;3	0.0011921	27444	160511_QHF_FH_JSI12i_3	70.1	48.014		+	1.1841	1.2148	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1841	1.2148	NaN	1	1	Median	281560000	179810000	101750000	0	0	0	0	0	0	13226000	13226000	0	268340000	166580000	101750000	58383	61	55009	355446;355447;355448;355449	479815;479816;479817;479818	479818			4	
YASWAASQINR	0	Unmodified	1265.6153	0.61528433	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			6	5.79		1	2						1	1	3			41.214	38.069	2	0.00038161	31172	160511_QHF_FH_JSI9i_3	72.643	58.436			0.96588	1.0672	24.235	4	1	Median	1.499	1.2377	NaN	1	0	Median	0.775	0.92026	27.273	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	204450000	103390000	101060000	69522000	35010000	34512000	134930000	68383000	66543000	0	0	0	0	0	0	58384	2597	55010	355450;355451;355452;355453	479819;479820;479821;479822;479823;479824;479825	479821			7	
YATALYSAASK	1	Unmodified	1144.5764	0.57643921	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.48	6.48	3	8	3			2	3	7	7	7	10	11	5	38.43	32.604	2	4.8242E-11	18571	160513_QHF_FH_JSI10Kac_4	134.68	113.77			1.3412	1.3071	114.59	33	33	Median	2.7485	2.308	114.17	7	7	Median	0.90289	1.0746	135.29	10	10	Median	0.80073	0.73022	87.204	11	11	Median	2.2855	2.5004	152.72	5	5	Median	4460800000	2432300000	2028500000	951970000	447190000	504780000	1490800000	864580000	626260000	1327600000	784190000	543390000	690430000	336370000	354060000	58385	1612	55011	355454;355455;355456;355457;355458;355459;355460;355461;355462;355463;355464;355465;355466;355467;355468;355469;355470;355471;355472;355473;355474;355475;355476;355477;355478;355479;355480;355481;355482;355483;355484;355485;355486	479826;479827;479828;479829;479830;479831;479832;479833;479834;479835;479836;479837;479838;479839;479840;479841;479842;479843;479844;479845;479846;479847;479848;479849;479850;479851;479852;479853;479854;479855;479856;479857;479858;479859;479860;479861	479834			36	
YATALYSAASKQNK	2	Acetyl (K)	1556.7835	0.78347187	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.7	0.937						4	11	13	8	6	11	8	11	49.288	39.242	2;3	8.444E-15	21671	160513_QHF_FH_JSI10Kac_6	140.24	114.2			0.1063	0.12032	255.09	14	11	Median	4.6341	3.9805	NaN	1	1	Median	0.63054	0.75377	191.04	6	3	Median	0.047176	0.046729	17.276	2	2	Median	0.039197	0.042037	353.02	5	5	Median	684690000	364990000	319700000	40473000	19194000	21279000	256920000	135820000	121100000	165790000	82873000	82914000	221520000	127110000	94409000	58386	1612	55012	355487;355488;355489;355490;355491;355492;355493;355494;355495;355496;355497;355498;355499;355500;355501;355502;355503;355504;355505;355506;355507;355508;355509;355510;355511;355512;355513;355514;355515;355516;355517;355518;355519;355520;355521;355522	479862;479863;479864;479865;479866;479867;479868;479869;479870;479871;479872;479873;479874;479875;479876;479877;479878;479879;479880;479881;479882;479883;479884;479885;479886;479887;479888;479889;479890;479891;479892;479893;479894;479895;479896;479897;479898	479898	1638;1640		37	
YATDTFAGLCHQLTNALVER	0	Unmodified	2279.1005	0.10046569	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	92.182	91.936	3	2.6379E-11	79531	160511_QHF_FH_JSI12i_3	127.32	115.18			0.93826	1.1241	46.373	5	1	Median	2.375	2.0475	NaN	1	1	Median	0.93826	1.1241	NaN	1	0	Median	0.70646	0.67914	13.984	2	0	Median	1.1483	1.1632	NaN	1	0	Median	413970000	192900000	221070000	28602000	4283200	24319000	42661000	22973000	19687000	204060000	108930000	95127000	138650000	56713000	81935000	58387	5448	55013	355523;355524;355525;355526;355527	479899;479900;479901;479902;479903;479904;479905;479906	479906			8	
YATEEALK	1	Unmodified	923.46001	0.46001246	1989	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.636	18.516	2	0.013215	15791	160511_QHF_FH_JSI11i_1	51.736	19.381			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58388	1989	55014	355528	479907	479907			1	
YATLATVSR	0	Unmodified	980.5291	0.52909508	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.45		4	2					1		1	2	3	1	28.628	26.747	2	0.00315	22460	160511_QHF_FH_JSI11i_2	61.582	36.584			0.94673	0.99174	34.617	7	1	Median	1.4616	1.2484	NaN	1	0	Median	0.88577	1.0659	10.198	2	0	Median	0.94673	0.96549	56.909	3	1	Median	0.7894	0.88523	NaN	1	0	Median	1080700000	543890000	536850000	194700000	91554000	103140000	273570000	157700000	115860000	464410000	221190000	243210000	148070000	73442000	74630000	58389	2517	55015	355529;355530;355531;355532;355533;355534;355535	479908;479909;479910;479911;479912;479913;479914;479915;479916	479914			9	
YATLPNIMK	1	Unmodified	1049.558	0.55795237	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	57.664	56.906	2	2.1385E-05	49296	160511_QHF_FH_JSI11i_2	106.36	88.448			0.94785	0.94955	17.591	6	1	Median	1.0831	0.89023	NaN	1	0	Median	1.0091	1.2154	20.755	2	1	Median	0.93061	0.93762	7.5298	2	0	Median	0.81202	0.91177	NaN	1	0	Median	1983500000	1019600000	963940000	401860000	171640000	230220000	452840000	233560000	219280000	675220000	355890000	319330000	453600000	258490000	195110000	58390	1473	55016	355536;355537;355538;355539;355540;355541	479917;479918;479919;479920;479921;479922;479923;479924;479925	479924			9	
YATLPNIMKAK	2	Unmodified	1248.69	0.69002918	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	1	1	2	49.724	48.997	2;3	0.0007868	41709	160511_QHF_FH_JSI12i_3	60.49	51.057			1.3445	1.3302	56.415	5	3	Plateau	0.4599	0.3695	NaN	1	1	Median	0.47488	0.53886	NaN	1	1	Median	1.3299	1.2856	NaN	1	0	Median	1.0334	1.0769	34.7	2	1	Median	1282900000	591070000	691840000	24271000	19470000	4801100	23363000	19651000	3712700	475590000	210250000	265340000	759690000	341700000	417990000	58391	1473	55017	355542;355543;355544;355545;355546	479926;479927;479928;479929;479930	479929			5	
YATLPNIMKAK	2	Oxidation (M)	1264.6849	0.6849438	1473	P38117	ETFB	Electron transfer flavoprotein subunit beta	yes	yes	0	0	1	1	By MS/MS			By matching	3	0			2							1			1	35.749	34.957	3	0.036683	28472	160511_QHF_FH_JSI9i_3	38.238	34.086			0.6234	0.56509	5.1373	2	0	Median	0.66412	0.54493	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58517	0.58599	NaN	1	0	Median	177920000	98693000	79227000	88794000	51141000	37653000	0	0	0	0	0	0	89126000	47552000	41574000	58392	1473	55017	355547;355548	479931	479931			1	
YATLSLFNTYK	1	Unmodified	1319.6762	0.67615325	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		4	1						4	2	1	2	4	76.482	71.93	2	2.8519E-09	38892	160513_QHF_FH_JSI10Kac_6	123.75	107.08			1.0275	1.0407	16.276	8	1	Median	1.1438	0.97155	18.455	2	0	Median	1.1161	1.2852	NaN	1	0	Median	0.91418	0.90024	20.6	2	0	Median	0.94541	1.0399	10.558	3	1	Median	737580000	357840000	379740000	239910000	108210000	131700000	188840000	92249000	96591000	175640000	92810000	82834000	133190000	64574000	68614000	58393	5646	55018	355549;355550;355551;355552;355553;355554;355555;355556;355557	479932;479933;479934;479935;479936;479937;479938;479939	479939			7	
YATLSLFNTYKGK	2	Unmodified	1504.7926	0.79257999	5646	Q9Y520	PRRC2C	Protein PRRC2C	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			63.705	62.193	3	0.014946	52000	160511_QHF_FH_JSI10i_3	45.28	42.615			0.23715	0.26335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.23715	0.26335	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20393000	17517000	2876700	0	0	0	20393000	17517000	2876700	0	0	0	0	0	0	58394	5646	55019	355558	479940	479940			1	
YAVDDVQYVDEIASVLTSQK	1	Unmodified	2242.1005	0.10050849	1022	P12955	PEPD	Xaa-Pro dipeptidase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		101.96	101.88	3	2.4072E-14	92600	160511_QHF_FH_JSI11i_1	135.38	126.9			4.0011	3.859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0011	3.859	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	305010000	54195000	250810000	0	0	0	0	0	0	305010000	54195000	250810000	0	0	0	58395	1022	55020	355559	479941	479941			1	
YAVDYSWYVDTILNLIR	0	Unmodified	2103.0677	0.06769222	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0		By MS/MS			16	0									2		2			101.65	95.933	2;3	1.2449E-96	56658	160513_QHF_FH_JSI10Kac_6	292.35	262.81			0.93561	1.1178	0.71931	2	0	Median	NaN	NaN	NaN	0	0	Median	0.93561	1.1178	0.71931	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	311920000	150340000	161580000	0	0	0	311920000	150340000	161580000	0	0	0	0	0	0	58396	726	55021	355560;355561	479942;479943;479944	479944			3	
YAVDYTWYVDTILNLIR	0	Unmodified	2117.0833	0.083342284	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			101.95	96.227	3	1.9294E-11	56871	160513_QHF_FH_JSI10Kac_6	124.09	109.4			0.83001	0.98285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83001	0.98285	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	62812000	33832000	28980000	0	0	0	62812000	33832000	28980000	0	0	0	0	0	0	58397	635	55022	355562	479945	479945			1	
YAVFGLGNSAYASHFNK	1	Unmodified	1844.8846	0.8845829	5023	Q9NV66	TYW1	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			4							2	1	1		66.326	65.207	3	1.7658E-06	57879	160511_QHF_FH_JSI11i_3	98.508	88.897			1.3298	1.1597	34.406	4	2	Median	1.1625	0.9453	36.434	2	1	Median	1.466	1.6815	NaN	1	1	Median	1.2063	1.0996	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168590000	77313000	91278000	65105000	30828000	34277000	32207000	11252000	20955000	71280000	35234000	36046000	0	0	0	58398	5023	55023	355563;355564;355565;355566	479946;479947;479948;479949;479950;479951	479946			6	
YAVGEECDFEVGK	1	Unmodified	1501.6395	0.63950975	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	50.975	50.435	2	0.0089815	45596	160511_QHF_FH_JSI11i_1	58.37	49.366			3.383	3.328	56.144	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3178	2.2375	NaN	1	1	Median	4.9378	4.9499	NaN	1	1	Median	43007000	11736000	31271000	0	0	0	0	0	0	25947000	8119000	17828000	17060000	3616900	13443000	58399	5330	55024	355567;355568	479952;479953	479952			2	
YAVIGTYDGR	0	Unmodified	1113.5455	0.54547343	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.3	6.28	2	2					3	4	1	2	3	3	4	44.211	37.408	2	0.0017078	32556	160511_QHF_FH_JSI11i_2	87.308	60.705			1.0286	1.1385	13.978	11	3	Median	1.4541	1.2124	NaN	1	0	Median	0.86704	1.0033	19.57	3	0	Median	1.1626	1.1385	9.7085	3	1	Median	1.0731	1.1611	8.2698	4	2	Median	642490000	296580000	345910000	9409200	3478100	5931200	181130000	86703000	94423000	224760000	112360000	112390000	227200000	94036000	133160000	58400	2902	55025	355569;355570;355571;355572;355573;355574;355575;355576;355577;355578;355579;355580	479954;479955;479956;479957;479958;479959;479960;479961;479962;479963;479964;479965	479960			12	
YAVLYQPLFDK	1	Unmodified	1355.7125	0.71253876	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63	3	4	4				1	4	4	4	5	5	6	80.786	76.169	2	3.3414E-18	69732	160511_QHF_FH_JSI11i_2	163.32	134.23			0.92044	0.97465	13.672	19	2	Median	1.0325	0.85331	14.058	3	0	Median	0.85855	1.028	6.6948	5	0	Median	0.97427	0.92646	12.385	5	0	Median	0.95299	1.0292	19.661	6	2	Median	8436100000	4068400000	4367800000	1612000000	706870000	905150000	1864200000	930390000	933840000	3042400000	1434900000	1607500000	1917500000	996260000	921210000	58401	1852	55026	355581;355582;355583;355584;355585;355586;355587;355588;355589;355590;355591;355592;355593;355594;355595;355596;355597;355598;355599;355600	479966;479967;479968;479969;479970;479971;479972;479973;479974;479975;479976;479977;479978;479979;479980;479981;479982;479983;479984;479985;479986;479987;479988;479989;479990;479991;479992;479993;479994;479995;479996;479997;479998;479999;480000;480001;480002;480003;480004;480005;480006;480007;480008;480009;480010;480011;480012	479996			47	
YAVLYQPLFDKR	1	Acetyl (K)	1553.8242	0.82421447	1852	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									2			1	1	83.242	73.926	2	4.7414E-05	39332	160513_QHF_FH_JSI12Kac_6	101.95	76.295			0.33155	0.30558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.33155	0.30558	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	60581000	42877000	17703000	0	0	0	0	0	0	60581000	42877000	17703000	0	0	0	58402	1852	55027	355601;355602	480013;480014	480014	1868		1	
YAVQYDNHYTNTK	1	Unmodified	1615.7267	0.72668527	5100	Q9NX74	DUS2	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		27.503	27.139	3	0.0001672	22807	160511_QHF_FH_JSI11i_2	80.905	72.077			1.4402	1.4295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4402	1.4295	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29243000	9431800	19811000	0	0	0	0	0	0	29243000	9431800	19811000	0	0	0	58403	5100	55028	355603	480015	480015			1	
YAVSMAR	0	Unmodified	796.39016	0.39015876	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	6.39	2	3	4						4	3	3	5	2	23.724	20.563	2	0.008921	17944	160511_QHF_FH_JSI10i_2	81.381	52.853			0.89062	0.91104	24.434	12	1	Median	0.89697	0.75146	17.382	3	0	Plateau	0.58733	0.71938	14.395	3	0	Median	0.89967	0.88279	30.268	4	1	Median	1.0924	1.154	23.379	2	0	Median	2952500000	1503000000	1449600000	622950000	286840000	336110000	733120000	403330000	329800000	1331600000	700720000	630830000	264910000	112070000	152840000	58404	1039	55029	355604;355605;355606;355607;355608;355609;355610;355611;355612;355613;355614;355615;355616	480016;480017;480018;480019;480020;480021;480022;480023;480024;480025	480023			10	
YAVTTGDHGIIR	0	Unmodified	1301.6728	0.67279921	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	33.585	32.949	2;3	4.9344E-11	28860	160511_QHF_FH_JSI10i_2	150.35	122.14			1.0435	1.0539	13.965	12	1	Median	1.2097	1.029	1.7594	2	0	Median	0.93754	1.1508	1.4193	2	0	Median	1.0592	1.0425	7.119	4	1	Median	0.97316	1.0355	24.622	4	0	Median	4167500000	1987900000	2179500000	591830000	269420000	322400000	627280000	326370000	300910000	1688600000	812150000	876480000	1259700000	579980000	679750000	58405	1805	55030	355617;355618;355619;355620;355621;355622;355623;355624;355625;355626;355627;355628	480026;480027;480028;480029;480030;480031;480032;480033;480034;480035;480036;480037;480038;480039;480040;480041;480042;480043;480044;480045;480046;480047	480041			22	
YAVWFGGSMLASTPEFYQVCHTK	1	Oxidation (M)	2694.2247	0.22467992	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	84.716	75.336	3	2.405E-61	40125	160513_QHF_FH_JSI12Kac_6	202.22	194.77			1.0003	1.0026	17.069	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93424	0.88858	NaN	1	0	Median	1.0709	1.1312	NaN	1	0	Median	106890000	53445000	53446000	0	0	0	0	0	0	27852000	13266000	14587000	79039000	40179000	38859000	58406	1939	55031	355629;355630	480048;480049;480050;480051	480050		1604	4	
YAVWFGGSMLASTPEFYQVCHTK	1	Unmodified	2678.2298	0.2297653	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	91.195	84.566	3	1.1777E-60	42999	160513_QHF_FH_JSI12Kac_6	197.72	100.23			1.1181	1.0792	23.486	5	0	Median	1.2684	1.0792	NaN	1	0	Median	0.91094	1.0749	NaN	1	0	Median	0.87234	0.81888	NaN	1	0	Median	1.3044	1.3624	20.678	2	0	Median	959450000	477530000	481920000	122700000	59805000	62892000	351930000	177140000	174780000	204320000	106350000	97972000	280510000	134230000	146280000	58407	1939	55031	355631;355632;355633;355634;355635	480052;480053;480054;480055;480056;480057;480058;480059;480060;480061;480062	480060			11	
YAYIQVTHVIPFFDEK	1	Unmodified	1968.9986	0.99855002	4555	Q9BZ29	DOCK9	Dedicator of cytokinesis protein 9	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	75.95	75.811	3	0.00060846	45835	160513_QHF_FH_JSI10Kac_6	86.367	77.976			0.96766	0.93525	4.79	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0453	0.96746	NaN	1	0	Median	0.89583	0.9041	NaN	1	0	Median	135280000	72724000	62551000	0	0	0	0	0	0	72636000	35281000	37355000	62639000	37443000	25196000	58408	4555	55032	355636;355637;355638	480063;480064	480064			2	
YAYVLFYR	0	Unmodified	1093.5597	0.55966693	633	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.709	66.025	2	1.7236E-23	34638	160513_QHF_FH_JSI12Kac_6	181.42	156.42			1.0881	1.0314	13.349	4	0	Median	1.1166	0.95618	NaN	1	0	Median	1.0871	1.2997	NaN	1	0	Median	1.089	1.044	NaN	1	0	Median	0.96185	1.0188	NaN	1	0	Median	2176200000	1102700000	1073400000	602410000	319860000	282550000	689360000	307960000	381400000	587130000	306490000	280640000	297270000	168440000	128830000	58409	633	55033	355639;355640;355641;355642	480065;480066;480067;480068;480069;480070;480071	480068			7	
YAYYDTER	0	Unmodified	1079.456	0.45598972	120	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	21.685	21.009	2	2.5229E-06	17280	160511_QHF_FH_JSI11i_2	143.11	131.34			1.019	1.0465	3.6948	8	0	Median	1.2644	1.0547	5.4878	2	0	Median	0.84741	1.019	2.8514	2	0	Median	1.0944	1.0892	1.9113	2	0	Median	0.9515	1.0366	2.2561	2	0	Median	1542000000	770820000	771150000	289160000	112910000	176240000	318940000	169140000	149800000	429370000	217950000	211430000	504500000	270830000	233670000	58410	120	55034	355643;355644;355645;355646;355647;355648;355649;355650	480072;480073;480074;480075;480076;480077;480078;480079;480080	480078			9	
YCALLLPLLK	1	Unmodified	1202.7097	0.70970199	2358	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	99.379	99.17	2	0.0012448	86813	160511_QHF_FH_JSI11i_2	67.032	61.873			1.4387	1.4649	69.71	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95002	0.89481	NaN	1	0	Median	2.1787	2.3981	NaN	1	1	Median	24861000	11451000	13411000	0	0	0	0	0	0	16356000	8380800	7975500	8505100	3069800	5435400	58411	2358	55035	355651;355652	480081;480082	480082			2	
YCAQDAFFQVK	1	Unmodified	1375.6231	0.62307182	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.18	6.03	4	4						3		1	4	3	3	62.99	59.569	2	4.8618E-06	52327	160511_QHF_FH_JSI9i_2	111.06	102.1			1.1195	1.1634	20.887	11	4	Median	1.382	1.1634	NaN	1	0	Median	0.8748	1.0338	17.91	4	2	Median	1.1581	1.1138	19.704	3	1	Median	1.1392	1.2438	14.187	3	1	Plateau	1070900000	551080000	519860000	75469000	32901000	42568000	321420000	179180000	142240000	384460000	183980000	200480000	289600000	155030000	134570000	58412	2340	55036	355653;355654;355655;355656;355657;355658;355659;355660;355661;355662;355663	480083;480084;480085;480086;480087;480088;480089;480090;480091;480092;480093;480094;480095	480090			13	
YCAYNIGDQSAINELMQMR	0	Unmodified	2276.0024	0.0024079005	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		95.108	94.774	2	0.0034021	83208	160511_QHF_FH_JSI11i_2	51.218	46.22			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58413	5295	55037	355664	480096	480096			1	
YCENKFNDK	2	Acetyl (K)	1258.5288	0.52883709	5388	Q9UL25	RAB21	Ras-related protein Rab-21	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		33.106	23.921	2	0.026104	14991	160513_QHF_FH_JSI11Kac_4	60.59	52.057			0.10302	0.10408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10302	0.10408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2172900	1854300	318580	0	0	0	0	0	0	2172900	1854300	318580	0	0	0	58414	5388	55038	355665	480097	480097	3381		1	
YCFGVEDTLK	1	Unmodified	1230.5591	0.55907458	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	57.741	56.817	2	0.00061383	48688	160511_QHF_FH_JSI12i_2	86.136	70.754			0.72047	0.77635	42.217	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5595	0.57599	NaN	1	1	Median	0.92776	1.0464	NaN	1	1	Median	143870000	88050000	55816000	0	0	0	0	0	0	93557000	60685000	32872000	50308000	27365000	22943000	58415	2010	55039	355666;355667	480098;480099	480098			2	
YCFPNYVGRPK	1	Unmodified	1399.6707	0.67069072	1941;1524	P42025;P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	no	no	0	0	0	1		By MS/MS			3	0			1								1			44.912	43.366	3	0.017558	36069	160511_QHF_FH_JSI10i_3	30.872	29.617			0.78064	0.87016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.78064	0.87016	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	39619000	18083000	21536000	0	0	0	39619000	18083000	21536000	0	0	0	0	0	0	58416	1524;1941	55040	355668	480100	480100			1	
YCHADIPR	0	Unmodified	1030.4654	0.46544897	5155	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	0	By MS/MS	By matching			3	0			2							1	1			28.934	27.581	3	0.056101	22420	160511_QHF_FH_JSI9i_3	15.151	3.9293			1.1346	1.0852	6.8969	2	0	Median	1.4326	1.1395	NaN	1	0	Median	0.8986	1.0336	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	101210000	50350000	50855000	50104000	22563000	27540000	51102000	27787000	23315000	0	0	0	0	0	0	58417	5155	55041	355669;355670	480101	480101			1	
YCIFANFSVTGGK	1	Unmodified	1462.6915	0.69148574	1971	P61964;Q86VZ2	WDR5;WDR5B	WD repeat-containing protein 5;WD repeat-containing protein 5B	yes	no	0	0	0	0			By MS/MS		3	0			1									1		79.664	79.664	2	0.0084193	71167	160511_QHF_FH_JSI11i_3	48.188	32.297			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58418	1971	55042	355671	480102	480102			1	
YCIFDLATGK	1	Unmodified	1186.5692	0.56924534	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		75.829	75.196	2	0.011586	66016	160511_QHF_FH_JSI11i_2	46.457	34.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58419	641	55043	355672	480103	480103			1	
YCKGEKCYKYIKYSK	5	4 Acetyl (K)	2185.0224	0.022398286	2393	Q13360	ZNF177	Zinc finger protein 177	yes	yes	4	0	0	4		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	96.615	88.425	3	0.016473	47682	160513_QHF_FH_JSI12Kac_6	32.995	23.074			2.0492	1.9251	109.2	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.19361	0.23166	NaN	1	1	Median	2.0492	1.9251	NaN	1	0	Median	0.98669	1.0611	NaN	1	0	Median	327880000	192680000	135200000	0	0	0	91491000	84739000	6752100	144370000	52820000	91546000	92026000	55122000	36904000	58420	2393	55044	355673;355674;355675	480104;480105	480104	2466;2467;2468;2469		2	
YCLMSVR	0	Unmodified	927.43064	0.43064337	5522;5462	Q9Y2K7;Q9UPP1	KDM2A;PHF8	Lysine-specific demethylase 2A;Histone lysine demethylase PHF8	no	no	0	0	0	0			By MS/MS		2	0		1										1		12.058	11.852	3	0.056863	9171	160511_QHF_FH_JSI11i_2	16.294	11.938			11.207	11.351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11.207	11.351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2088300000	139860000	1948500000	0	0	0	0	0	0	2088300000	139860000	1948500000	0	0	0	58421	5522;5462	55045	355676	480106	480106			1	
YCLSILTSHVK	1	Unmodified	1319.6908	0.69075746	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	1	2	2	2	62.251	56.784	3	9.9957E-12	30982	160513_QHF_FH_JSI11Kac_6	133.89	120.08			0.87876	0.90867	27.046	7	2	Median	1.0575	0.90867	NaN	1	0	Median	0.79485	0.92795	17.495	2	1	Median	0.77857	0.7413	7.0254	2	1	Median	1.2763	1.3373	21.141	2	0	Median	433230000	217600000	215640000	27285000	14301000	12984000	111740000	61534000	50205000	129240000	66477000	62759000	164970000	75284000	89690000	58422	648	55046	355677;355678;355679;355680;355681;355682;355683	480107;480108;480109;480110;480111;480112;480113;480114	480109			8	
YCNLQKYNGK	2	Acetyl (K)	1328.6183	0.6183208	213	O14879	IFIT3	Interferon-induced protein with tetratricopeptide repeats 3	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		34.707	25.414	2	0.018208	15747	160513_QHF_FH_JSI11Kac_4	62.2	50.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1484200	1484200	0	0	0	0	0	0	0	1484200	1484200	0	0	0	0	58423	213	55047	355684	480115	480115	116		1	
YCNTWPVAISMLASK	1	Unmodified	1739.8375	0.83749805	2160	Q00796	SORD	Sorbitol dehydrogenase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	97.01	96.928	2	6.5705E-05	83796	160511_QHF_FH_JSI12i_3	143.42	137.96			0.95423	1.1061	33.926	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95423	1.1061	NaN	1	0	Median	0.64785	0.61793	NaN	1	0	Median	1.0892	1.1179	NaN	1	0	Median	113560000	66914000	46649000	0	0	0	12769000	7532800	5236300	36590000	22132000	14459000	64203000	37249000	26954000	58424	2160	55048	355685;355686;355687	480116;480117;480118;480119;480120	480120			4	
YCTYQGQDER	0	Unmodified	1318.5248	0.52481434	5821				yes	yes	0	0	0	0				By MS/MS	1	0	1												1	49.371	48.705	3	0.052548	44348	160511_QHF_FH_JSI12i_1	17.026	13.704	+		0.58894	0.62946	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.58894	0.62946	NaN	1	0	Median	22789000	13086000	9703600	0	0	0	0	0	0	0	0	0	22789000	13086000	9703600	58425	5821	55049	355688	480121	480121			1	
YCVEEEEK	1	Unmodified	1084.4383	0.43829074	2087	P78347	GTF2I	General transcription factor II-I	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	15.092	14.662	2	0.003527	12362	160511_QHF_FH_JSI12i_1	71.877	57.875			1.2959	1.3864	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2959	1.3864	NaN	1	0	Median	44299000	18259000	26040000	0	0	0	0	0	0	0	0	0	44299000	18259000	26040000	58426	2087	55050	355689	480122	480122			1	
YCYLQNEVFGLFQK	1	Unmodified	1807.8603	0.86034198	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	100.93	100.77	3	4.5181E-05	86619	160511_QHF_FH_JSI12i_2	76.357	71.74			0.79	0.82988	21.33	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72512	0.7137	NaN	1	1	Median	0.86068	0.96498	NaN	1	0	Median	76558000	41499000	35059000	0	0	0	0	0	0	42209000	22659000	19550000	34349000	18840000	15509000	58427	1085	55051	355690;355691;355692	480123;480124;480125	480123			3	
YDAFGEDSSSAMGVENR	0	Unmodified	1833.7476	0.74755665	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	49.344	48.665	2	4.9189E-07	43858	160511_QHF_FH_JSI10i_1	91.845	84.269			0.9481	0.91141	7.5219	4	0	Median	1.1089	0.91491	NaN	1	0	Median	0.76163	0.90793	NaN	1	0	Median	1.0806	1.0295	NaN	1	0	Median	0.83186	0.86148	NaN	1	0	Median	203450000	98111000	105340000	43893000	22027000	21866000	44505000	24209000	20296000	62301000	27706000	34594000	52749000	24169000	28580000	58428	5544	55052	355693;355694;355695;355696;355697	480126;480127;480128;480129;480130;480131	480129			6	
YDAFGEDSSSAMGVENR	0	Oxidation (M)	1849.7425	0.74247127	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	1	0		By MS/MS			1	0	1										1			37.53	37.159	2	0.040807	33271	160511_QHF_FH_JSI10i_1	51.726	46.342			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9749200	9749200	0	0	0	0	9749200	9749200	0	0	0	0	0	0	0	58429	5544	55052	355698	480132	480132			1	
YDAFLASESLIK	1	Unmodified	1355.6973	0.69728262	2036	P62906	RPL10A	60S ribosomal protein L10a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5	5.79	1	2						1		1	2	1		78.851	75.809	2	0.00053195	68952	160511_QHF_FH_JSI10i_2	84.658	73.901			0.62045	0.58597	36.21	4	3	Median	0.50958	0.43583	NaN	1	1	Median	0.51996	0.6212	47.401	2	2	Median	0.77835	0.77282	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	166710000	112040000	54669000	76808000	50395000	26412000	86896000	59896000	27000000	3008600	1751400	1257200	0	0	0	58430	2036	55053	355699;355700;355701;355702	480133;480134;480135;480136;480137	480137			5	
YDAGEHGLQEAEK	1	Unmodified	1445.6423	0.64228694	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	19.854	18.997	2	5.2376E-05	16220	160511_QHF_FH_JSI10i_2	77.062	62.09			1.0238	0.98772	32.18	6	5	Median	1.2771	1.1044	30.337	2	2	Median	0.48896	0.57595	NaN	1	1	Median	1.0131	1.0043	NaN	1	0	Median	1.0789	1.1557	24.557	2	2	Median	108820000	54344000	54480000	26371000	12513000	13858000	16282000	10602000	5679800	33339000	17086000	16254000	32832000	14144000	18688000	58431	3922	55054	355703;355704;355705;355706;355707;355708;355709	480138;480139;480140;480141;480142;480143;480144;480145	480145			8	
YDCGEEILITVLSAMTEEAAVAIK	1	Unmodified	2625.2918	0.29175643	2060	P63241;Q6IS14	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.43	6.37		2	1	1					3	2	1	3	1	104.81	100.72	2;3	4.0695E-34	52342	160513_QHF_FH_JSI12Kac_6	158	145.69			1.0165	1.1134	45.335	6	1	Median	1.8043	1.5296	93.494	2	1	Median	0.97932	1.1585	NaN	1	0	Median	1.1281	1.103	10.86	2	0	Median	1.0065	1.0701	NaN	1	0	Median	254320000	116180000	138140000	42137000	9062800	33074000	128910000	55500000	73411000	43496000	21805000	21691000	39774000	29810000	9964700	58432	2060	55055	355710;355711;355712;355713;355714;355715;355716	480146;480147;480148;480149;480150;480151;480152;480153;480154;480155;480156;480157;480158	480156			13	
YDDAERR	0	Unmodified	923.40971	0.40970823	1327	P29692	EEF1D	Elongation factor 1-delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		12						3		3	5	4	3	4.2509	1.9312	2;3	0.0017757	1978	160511_QHF_FH_JSI12i_2	117.16	88.648			1.2088	1.2221	64.096	14	6	Median	2.7595	1.1058	44.134	3	2	Plateau	1.3342	1.6182	76.37	4	3	Median	1.1821	1.1789	75.652	4	1	Median	1.1306	1.2819	54.481	3	0	Plateau	1335100000	631750000	703400000	257270000	104310000	152970000	298590000	137430000	161160000	278610000	120700000	157910000	500680000	269320000	231360000	58433	1327	55056	355717;355718;355719;355720;355721;355722;355723;355724;355725;355726;355727;355728;355729;355730;355731	480159;480160;480161;480162;480163;480164;480165;480166;480167;480168;480169;480170;480171;480172;480173;480174;480175	480160			17	
YDDAIQLYDR	0	Unmodified	1270.583	0.58298115	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	48.191	47.509	2	0.0023504	42198	160511_QHF_FH_JSI9i_1	60.398	46.395			0.96508	0.97474	26.342	4	0	Median	1.3743	1.1368	NaN	1	0	Median	0.70572	0.83575	NaN	1	0	Median	0.74538	0.72344	NaN	1	0	Median	1.2495	1.2751	NaN	1	0	Median	275120000	135260000	139860000	46105000	19097000	27007000	62066000	33697000	28370000	81488000	43789000	37700000	85460000	38681000	46780000	58434	2597	55057	355732;355733;355734;355735	480176;480177;480178;480179;480180	480180			5	
YDDEDISEDIK	1	Unmodified	1340.562	0.56197093	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			41.595	41.193	2	0.052698	37040	160511_QHF_FH_JSI10i_1	35.178	26.265			1.9368	2.27	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.9368	2.27	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	96943000	28152000	68791000	0	0	0	96943000	28152000	68791000	0	0	0	0	0	0	58435	5321	55058	355736	480181	480181			1	
YDDEEFEYR	0	Unmodified	1264.4884	0.48841206	1932	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	37.287	36.675	2	0.00037183	32854	160511_QHF_FH_JSI11i_1	81.95	81.95			0.99979	1.0003	5.1128	4	0	Median	1.2489	1.0389	NaN	1	0	Median	0.79049	0.93084	NaN	1	0	Median	1.0023	0.97314	NaN	1	0	Median	0.99727	1.0283	NaN	1	0	Median	293960000	148120000	145840000	44706000	20851000	23855000	89085000	50402000	38682000	89170000	38377000	50792000	71002000	38490000	32512000	58436	1932	55059	355737;355738;355739;355740	480182;480183;480184;480185;480186;480187;480188;480189	480182			8	
YDDIEGANYFQQANELSK	1	Unmodified	2103.9385	0.93852854	1306	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	69.965	69.37	2	6.4476E-11	63215	160511_QHF_FH_JSI12i_1	148.72	136.36			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7201000	7201000	0	0	0	0	0	0	0	0	0	0	7201000	7201000	0	58437	1306	55060	355741	480190	480190			1	
YDDMAAAMK	1	Oxidation (M)	1030.41	0.4099675	1384;1976	P61981;P31946	YWHAG;YWHAB	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	21.244	20.723	2	0.0013961	24104	160511_QHF_FH_JSI11i_1	71.501	15.243			1.5156	1.2656	110.8	5	0	Median	1.7776	1.4592	20.13	2	0	Median	0.58779	0.68069	NaN	1	0	Median	2.7569	2.6594	189.9	2	0	Median	NaN	NaN	NaN	0	0	Median	969480000	380010000	589470000	380040000	168230000	211810000	260880000	111150000	149730000	328550000	100630000	227920000	0	0	0	58438	1976;1384	55061	355742;355743;355744;355745;355746;355747;355748	480191;480192;480193;480194	480191		1023;1024	4	
YDDMAAAMK	1	Unmodified	1014.4151	0.41505288	1384;1976	P61981;P31946	YWHAG;YWHAB	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			2	1	2	2	29.31	27.375	2	5.8402E-06	24320	160511_QHF_FH_JSI10i_1	114.28	110.89			0.85614	0.83906	89.631	7	3	Median	1.1876	0.93798	127.07	2	2	Median	0.64373	0.74716	NaN	1	0	Median	0.96225	0.9332	15.039	2	0	Median	1.1919	1.252	172.65	2	1	Median	5772100000	2732600000	3039500000	2108700000	863800000	1244900000	1071800000	689030000	382770000	1125200000	571360000	553880000	1466400000	608440000	857960000	58439	1976;1384	55061	355749;355750;355751;355752;355753;355754;355755	480195;480196;480197;480198;480199;480200;480201;480202;480203	480200			9	
YDDMAAAMK	1	2 Oxidation (M)	1046.4049	0.40488213	1384;1976	P61981;P31946	YWHAG;YWHAB	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	no	no	0	0	2	0			By MS/MS		1	0	1											1		27.471	27.265	2	0.0086566	24159	160511_QHF_FH_JSI11i_1	73.665	15.806			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58440	1976;1384	55061	355756	480204	480204		1023;1024	1	
YDDMAACMK	1	Unmodified	1103.4086	0.4085873	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	1	2	1	26.399	25.78	2	0.00010659	22768	160511_QHF_FH_JSI10i_1	93.162	93.162			0.9598	1.0063	66.496	6	4	Median	0.99601	0.81728	107.98	2	2	Median	0.84991	0.97758	NaN	1	0	Median	0.62819	0.60562	75.897	2	2	Median	1.2701	1.3587	NaN	1	0	Median	1488200000	860250000	627960000	189840000	101370000	88463000	325980000	198860000	127130000	608370000	396510000	211860000	364020000	163510000	200500000	58441	2051	55062	355757;355758;355759;355760;355761;355762	480205;480206;480207;480208;480209;480210;480211;480212	480210			8	
YDDMASAMK	1	Unmodified	1030.41	0.4099675	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	25.096	24.765	2	0.00059589	21660	160511_QHF_FH_JSI11i_1	77.732	14.167			0.97643	1.0656	16.17	3	0	Median	NaN	NaN	NaN	0	0	Median	0.97643	1.1645	NaN	1	0	Median	1.0848	1.0656	NaN	1	0	Median	0.82113	0.85094	NaN	1	0	Median	601030000	299320000	301710000	0	0	0	183860000	97666000	86195000	223590000	103250000	120340000	193570000	98401000	95173000	58442	2224	55063	355763;355764;355765	480213;480214;480215;480216;480217;480218;480219	480214			7	
YDDMATCMK	1	Unmodified	1133.4192	0.41915198	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	24.689	24.339	2	0.0012639	21641	160511_QHF_FH_JSI12i_1	69.812	67.946			0.77233	0.77417	5.9327	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82013	0.80734	NaN	1	0	Median	0.72732	0.74236	NaN	1	0	Median	314060000	178250000	135810000	0	0	0	0	0	0	180950000	106000000	74958000	133110000	72257000	60850000	58443	1288	55064	355766;355767	480220;480221;480222;480223	480223			4	
YDDMLVVPIIENTPEEK	1	Unmodified	2003.9762	0.9761596	4101	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	11									2	3	3	3	93.827	93.52	2;3	2.3355E-05	84994	160511_QHF_FH_JSI12i_1	97.69	82.814			0.65213	0.65574	29.659	9	7	Median	0.51503	0.42073	NaN	1	0	Median	0.5937	0.67303	8.472	2	2	Median	0.67815	0.65574	23.71	3	2	Median	0.78526	0.77664	32.663	3	3	Median	154400000	87630000	66772000	14925000	7668200	7256900	42754000	27655000	15100000	51608000	28787000	22821000	45115000	23520000	21594000	58444	4101	55065	355768;355769;355770;355771;355772;355773;355774;355775;355776;355777;355778	480224;480225;480226;480227;480228;480229;480230;480231;480232;480233;480234;480235;480236;480237	480232			14	
YDDPEVQK	1	Unmodified	992.44509	0.44509068	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		7	6	2					2					2	2		16.306	12.505	2	0.0016552	10881	160511_QHF_FH_JSI11i_1	100.19	62.63			0.63129	0.67994	53.951	4	2	Linear	NaN	NaN	NaN	0	0	Median	1.0166	1.194	77.28	2	1	Median	1.022	1.0064	49.676	2	1	Median	NaN	NaN	NaN	0	0	Median	878760000	616590000	262180000	0	0	0	439000000	303460000	135540000	439760000	313120000	126640000	0	0	0	58445	1480	55066	355779;355780;355781;355782	480238;480239;480240	480238			3	
YDDPEVQKDIK	2	Acetyl (K)	1390.6616	0.6616254	1480	P38646	HSPA9	Stress-70 protein, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						2					1	1		46.995	37.692	2	0.015343	20200	160513_QHF_FH_JSI10Kac_3	53.683	46.463			0.66631	0.71499	31.802	2	0	Median	NaN	NaN	NaN	0	0	Median	0.75926	0.89528	NaN	1	0	Median	0.58473	0.571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7746400	4697500	3048900	0	0	0	3668900	2345600	1323300	4077500	2351900	1725600	0	0	0	58446	1480	55067	355783;355784	480241	480241	1470;1481		1	
YDDYPENGVVQMNSR	0	Unmodified	1785.7628	0.76281278	4259	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.849	45.355	2	1.1575E-05	40903	160511_QHF_FH_JSI11i_1	119.69	113.72			0.78817	0.92149	18.525	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.78817	0.92149	NaN	1	0	Median	1.3439	1.3143	NaN	1	1	Median	1.1709	1.2061	NaN	1	1	Median	150150000	70619000	79535000	0	0	0	40939000	22160000	18779000	57035000	27213000	29822000	52180000	21246000	30934000	58447	4259	55068	355785;355786;355787	480242;480243;480244;480245;480246	480242			5	
YDDYSSSR	0	Unmodified	991.3883	0.38830408	1474	P38159;Q96E39	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	yes	no	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	8.6858	6.8832	2	0.00057467	5916	160511_QHF_FH_JSI10i_1	103.74	77.63			1.0115	0.98606	12.128	5	0	Median	1.1738	0.95558	NaN	1	0	Median	0.98429	1.1685	NaN	1	0	Median	1.0923	1.073	11.95	2	0	Median	0.83404	0.89519	NaN	1	0	Median	1596500000	778670000	817840000	283420000	130740000	152680000	462080000	221250000	240830000	448780000	222590000	226190000	402220000	204090000	198140000	58448	1474	55069	355788;355789;355790;355791;355792	480247;480248;480249;480250;480251;480252	480251			6	
YDEAASYIQSK	1	Unmodified	1273.5826	0.5826468	818	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	2	1	32.56	32.064	2	0.00010917	28633	160511_QHF_FH_JSI11i_1	97.813	85.766			1.0189	0.9262	61.774	6	6	Median	1.6466	1.3476	NaN	1	1	Median	1.0115	1.1731	86.447	2	2	Median	1.1199	1.0969	80.313	2	2	Median	0.53304	0.54645	NaN	1	1	Median	534740000	251550000	283180000	84262000	34623000	49639000	173430000	78462000	94972000	179100000	85628000	93471000	97941000	52838000	45103000	58449	818	55070	355793;355794;355795;355796;355797;355798;355799	480253;480254;480255;480256;480257;480258;480259	480253			7	
YDEEFQR	0	Unmodified	985.41412	0.4141249	1844	P55060	CSE1L	Exportin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	18.22	17.727	2	0.0046967	15045	160511_QHF_FH_JSI11i_1	97.602	93.246			1.098	1.1644	16.75	4	0	Median	1.104	0.92097	NaN	1	0	Median	1.0921	1.2916	NaN	1	0	Median	1.3475	1.2972	NaN	1	0	Median	0.97912	1.0497	NaN	1	0	Median	1718900000	758470000	960450000	331440000	134860000	196580000	404930000	201540000	203400000	576020000	246720000	329300000	406520000	175350000	231170000	58450	1844	55071	355800;355801;355802;355803	480260;480261;480262;480263;480264	480260			5	
YDEMVESMK	1	Unmodified	1130.4624	0.46239701	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	32.486	31.83	2	0.00028063	27859	160511_QHF_FH_JSI9i_1	95.502	87.562			0.7639	0.63863	105.08	7	7	Median	1.2465	1.0293	67.504	2	2	Median	0.72037	0.85546	118.85	2	2	Median	0.29122	0.2877	NaN	1	1	Median	1.2518	1.3325	176.41	2	2	Median	2605300000	1369600000	1235700000	720220000	305920000	414300000	849340000	501070000	348270000	448220000	269020000	179200000	587570000	293580000	293980000	58451	1990	55072	355804;355805;355806;355807;355808;355809;355810	480265;480266;480267;480268;480269;480270;480271	480270			7	
YDEMVESMK	1	Oxidation (M)	1146.4573	0.45731163	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	1	0				By MS/MS	1	0	1												1	32.372	31.796	2	0.0058318	28641	160511_QHF_FH_JSI12i_1	58.433	50.015			0.6122	0.6329	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6122	0.6329	NaN	1	0	Median	74201000	45800000	28402000	0	0	0	0	0	0	0	0	0	74201000	45800000	28402000	58452	1990	55072	355811	480272	480272		1654;1655	1	
YDEMVESMKK	2	Unmodified	1258.5574	0.55736002	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.287		10	1							2	2	3	4	25.653	24.904	2;3	6.5754E-05	20637	160511_QHF_FH_JSI11i_2	105.52	87.898			2.8068	3.1272	149.82	9	9	Median	1.1166	0.96708	227.76	2	2	Median	0.31567	0.38412	35.909	2	2	Median	3.3323	3.3369	73.297	3	3	Median	6.7322	7.5031	123.77	2	2	Median	1291500000	563990000	727490000	171500000	64989000	106510000	225160000	142690000	82474000	733690000	316100000	417590000	161120000	40212000	120910000	58453	1990	55073	355812;355813;355814;355815;355816;355817;355818;355819;355820;355821;355822	480273;480274;480275;480276;480277;480278;480279;480280;480281;480282;480283	480278			11	
YDENMVLVSLLK	1	Unmodified	1422.7429	0.74285261	680	O95352	ATG7	Ubiquitin-like modifier-activating enzyme ATG7	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			97.708	97.572	2	0.003536	86391	160511_QHF_FH_JSI10i_2	65.5	42.859			0.94651	1.1925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.94651	1.1925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11502000	5781700	5719900	0	0	0	11502000	5781700	5719900	0	0	0	0	0	0	58454	680	55074	355823	480284	480284			1	
YDEPLGK	1	Unmodified	820.39668	0.39668393	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				19.471	18.34	2	0.011144	15305	160511_QHF_FH_JSI9i_1	78.616	47.947			1.1441	0.93194	NaN	1	1	Median	1.1441	0.93194	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	172910000	109280000	63631000	172910000	109280000	63631000	0	0	0	0	0	0	0	0	0	58455	4266	55075	355824	480285	480285			1	
YDERPGPSPLPHR	0	Unmodified	1519.7532	0.75317479	910	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	yes	yes	0	0	0	1	By MS/MS				3	0			2							2				23.346	22.049	3;4	0.0036697	17771	160511_QHF_FH_JSI9i_3	34.179	19.921			0.91268	0.738	4.6051	2	0	Median	0.91268	0.738	4.6051	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	157010000	85423000	71591000	157010000	85423000	71591000	0	0	0	0	0	0	0	0	0	58456	910	55076	355825;355826	480286;480287;480288	480288			3	
YDESDNAFIR	0	Unmodified	1228.536	0.53603095	346	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.862	39.153	2	0.0067631	35181	160511_QHF_FH_JSI10i_1	53.965	37.425			1.1355	1.183	65.489	3	1	Median	2.6189	2.1828	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.63198	0.58961	NaN	1	1	Median	1.1355	1.183	NaN	1	0	Median	157100000	78145000	78959000	36303000	12278000	24025000	0	0	0	69814000	41542000	28271000	50987000	24325000	26662000	58457	346	55077	355827;355828;355829;355830	480289;480290;480291	480291			3	
YDEVLHMVR	0	Unmodified	1160.5648	0.56482866	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			41.453	40.487	3	0.0038018	35643	160511_QHF_FH_JSI10i_2	47.187	39.807			2.33	2.8594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.33	2.8594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	23590000	7940200	15650000	0	0	0	23590000	7940200	15650000	0	0	0	0	0	0	58458	1805	55078	355831	480292	480292			1	
YDEYVNVK	1	Unmodified	1028.4815	0.48147619	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	27.507	26.925	2	0.00096024	23951	160511_QHF_FH_JSI12i_1	95.909	73.778			1.1813	0.91651	14.785	4	1	Linear	1.3275	1.0636	NaN	1	0	Median	0.76616	0.88782	NaN	1	0	Median	1.2707	1.2543	NaN	1	1	Median	1.0982	1.1556	NaN	1	0	Median	946500000	472350000	474150000	243880000	103170000	140710000	331190000	175140000	156050000	231920000	124170000	107750000	139510000	69855000	69651000	58459	3766	55079	355832;355833;355834;355835	480293;480294;480295	480294			3	
YDGFRESEFEK	1	Unmodified	1405.615	0.61500956	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	37.998	37.411	3	0.0034075	32878	160511_QHF_FH_JSI10i_2	50.207	45.359			0.86854	0.97323	11.507	5	0	Median	NaN	NaN	NaN	0	0	Median	0.77891	0.93488	NaN	1	0	Median	1.1405	1.103	10.681	2	0	Median	0.86026	0.92383	7.3663	2	0	Median	900390000	456640000	443750000	0	0	0	148630000	85290000	63344000	413430000	190130000	223300000	338330000	181220000	157110000	58460	2277	55080	355836;355837;355838;355839;355840	480296;480297;480298;480299	480297			4	
YDGHLPIEIK	1	Unmodified	1183.6237	0.62372375	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		6	3							2	3	3	1	54.545	53.475	2;3	0.00036151	47056	160511_QHF_FH_JSI9i_2	64.439	56.513			1.0932	1.0983	32.801	7	1	Median	1.4026	1.1969	32.795	2	0	Median	1.2851	1.508	44.831	2	0	Median	0.85904	0.88253	21.612	2	1	Median	1.0932	1.2167	NaN	1	0	Median	874370000	471650000	402720000	121230000	59531000	61695000	211840000	105840000	106000000	369260000	215540000	153720000	172050000	90745000	81308000	58461	1566	55081	355841;355842;355843;355844;355845;355846;355847;355848;355849	480300;480301;480302;480303;480304;480305;480306;480307;480308;480309;480310;480311;480312;480313;480314;480315;480316;480317;480318;480319;480320;480321	480310			22	
YDGIILPGK	1	Unmodified	974.54368	0.54368251	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.07	6.07	4	4	2				2	3		4	4	4	3	57.456	53.211	2	1.2546E-06	46746	160511_QHF_FH_JSI9i_2	133.55	105.04			0.88759	0.92139	12.219	15	3	Median	1.3181	0.93201	12.434	4	1	Linear	0.71617	0.84401	13.515	4	1	Median	0.92676	0.9288	12.804	4	1	Median	0.88759	0.98517	8.4463	3	0	Median	14704000000	7313000000	7391100000	2684700000	1118600000	1566100000	3852600000	2038200000	1814400000	4823900000	2541600000	2282400000	3342800000	1614700000	1728200000	58462	2038	55082	355850;355851;355852;355853;355854;355855;355856;355857;355858;355859;355860;355861;355862;355863;355864	480322;480323;480324;480325;480326;480327;480328;480329;480330;480331;480332;480333;480334;480335;480336;480337;480338;480339;480340;480341;480342;480343;480344;480345;480346;480347;480348;480349;480350;480351	480342			30	
YDGKWEVEEMK	2	Unmodified	1412.6282	0.62821678	1299	P27824	CANX	Calnexin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	3.93		17	13						3	7	6	8	12	44.788	43.123	2;3	5.2185E-17	36579	160511_QHF_FH_JSI12i_3	155.48	142.13			0.83347	0.84206	50.391	29	8	Median	0.93755	0.73921	8.1717	5	1	Plateau	0.68977	0.82027	14.962	5	1	Median	1.1936	1.1342	60.827	8	2	Median	0.82602	0.86428	63.616	11	4	Median	9774400000	5250500000	4523900000	738500000	419530000	318970000	1127300000	595610000	531730000	3643600000	1846500000	1797100000	4265000000	2388900000	1876100000	58463	1299	55083	355865;355866;355867;355868;355869;355870;355871;355872;355873;355874;355875;355876;355877;355878;355879;355880;355881;355882;355883;355884;355885;355886;355887;355888;355889;355890;355891;355892;355893;355894;355895;355896;355897	480352;480353;480354;480355;480356;480357;480358;480359;480360;480361;480362;480363;480364;480365;480366;480367;480368;480369;480370;480371;480372;480373;480374;480375;480376;480377;480378;480379;480380;480381;480382;480383;480384;480385;480386;480387;480388;480389;480390;480391;480392;480393;480394;480395;480396;480397;480398;480399;480400;480401;480402;480403;480404;480405;480406;480407;480408;480409;480410;480411;480412;480413;480414;480415;480416;480417;480418;480419	480411			68	
YDGKWEVEEMK	2	Oxidation (M)	1428.6231	0.6231314	1299	P27824	CANX	Calnexin	yes	yes	0	0	1	1			By MS/MS	By MS/MS	3	0			2									1	1	30.467	30.435	2	0.01611	25888	160511_QHF_FH_JSI12i_3	66.595	58.95			1.0032	0.97306	46.608	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.441	1.3529	NaN	1	0	Median	0.69844	0.69986	NaN	1	0	Median	148640000	61989000	86652000	0	0	0	0	0	0	43280000	14218000	29062000	105360000	47771000	57590000	58464	1299	55083	355898;355899	480420;480421	480421		948	2	
YDGLVGMFDPK	1	Unmodified	1240.5798	0.57981002	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	76.573	75.835	2	2.4898E-09	66475	160511_QHF_FH_JSI11i_2	129.38	116.76			1.0327	1.1196	8.2436	5	0	Median	1.2113	1.0378	NaN	1	0	Median	0.91797	1.1196	NaN	1	0	Median	1.1716	1.1557	13.911	2	0	Median	1.0128	1.128	NaN	1	0	Median	458930000	225410000	233520000	86924000	44180000	42745000	76306000	47220000	29086000	196640000	79000000	117640000	99067000	55011000	44056000	58465	1012;1666	55084	355900;355901;355902;355903;355904	480422;480423;480424;480425;480426;480427;480428;480429;480430	480429			9	
YDGNVYENLFEWAK	1	Unmodified	1746.789	0.78895118	2624	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	100.27	100.06	2	0.0010661	85884	160511_QHF_FH_JSI12i_2	66.267	59.378			1.3554	1.4707	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3554	1.4707	NaN	1	0	Median	25512000	11465000	14047000	0	0	0	0	0	0	0	0	0	25512000	11465000	14047000	58466	2624	55085	355905	480431	480431			1	
YDGQVAVFGSDLQEK	1	Unmodified	1654.7839	0.7838658	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	5.24	8	3					3			3	5	2	4	62.824	61.163	2;3	4.1764E-137	55691	160511_QHF_FH_JSI12i_1	284.32	266.84			0.9475	0.96205	12.673	10	1	Median	1.112	0.92283	7.0177	2	0	Median	0.80621	0.94689	16.878	4	1	Median	1.0394	1.0053	7.3467	2	0	Median	0.98354	1.0144	10.758	2	0	Median	2992900000	1526300000	1466500000	662380000	325070000	337320000	747520000	434060000	313460000	902640000	440320000	462320000	680330000	326900000	353430000	58467	1208	55086	355906;355907;355908;355909;355910;355911;355912;355913;355914;355915;355916;355917;355918;355919	480432;480433;480434;480435;480436;480437;480438;480439;480440;480441;480442;480443;480444;480445;480446;480447;480448;480449;480450;480451;480452	480436			21	
YDGSTIVPGEQGAEYQHFIQQCTDDVR	0	Unmodified	3112.3832	0.38324207	2487	Q14019	COTL1	Coactosin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.728	4	2	1							1	3	1	2	75.825	75.371	3	5.0508E-18	66872	160511_QHF_FH_JSI10i_2	109.06	106.75			1.0572	1.1691	23.19	6	3	Median	1.3161	1.1437	NaN	1	0	Median	0.99025	1.1952	8.6709	3	2	Median	0.94777	0.91677	NaN	1	0	Median	1.7778	1.8397	NaN	1	1	Median	338950000	142330000	196620000	42458000	15629000	26829000	166770000	78524000	88247000	78317000	35590000	42728000	51404000	12591000	38812000	58468	2487	55087	355920;355921;355922;355923;355924;355925;355926	480453;480454;480455;480456;480457;480458;480459;480460;480461;480462;480463	480462			11	
YDHGTFFPMGDEGASSQIGR	0	Unmodified	2170.9378	0.93781703	5243	Q9UBN7	HDAC6	Histone deacetylase 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		63.314	62.847	3	1.4124E-16	55651	160511_QHF_FH_JSI11i_3	117.29	109.3			0.60795	0.54336	161.89	2	2	Median	0.20234	0.17296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8267	1.7071	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57285000	20189000	37096000	10694000	9175400	1518100	0	0	0	46591000	11013000	35578000	0	0	0	58469	5243	55088	355927;355928	480464;480465	480464			2	
YDIDLPNK	1	Unmodified	976.48656	0.48656157	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		46.664	45.98	2	0.0006475	41613	160511_QHF_FH_JSI11i_1	101.33	42.346			1.0554	1.0192	8.232	3	0	Median	1.3998	1.157	NaN	1	0	Median	0.83735	0.9916	NaN	1	0	Median	1.0554	1.0192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1366600000	684340000	682230000	366640000	154280000	212360000	486290000	250900000	235380000	513640000	279160000	234480000	0	0	0	58470	112	55089	355929;355930;355931	480466;480467;480468;480469	480467			4	
YDIDLPNKK	2	Unmodified	1104.5815	0.58152458	112	O00244	ATOX1	Copper transport protein ATOX1	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.57	0.495		3	4							2		3	2	36.594	36.299	2;3	5.1574E-06	30735	160511_QHF_FH_JSI12i_3	117.04	100.83			1.0231	0.94686	48.96	6	2	Median	1.1484	0.96507	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83293	0.83208	71.918	3	2	Median	1.1385	1.1621	31.661	2	0	Median	811160000	428050000	383110000	61697000	21317000	40380000	0	0	0	341440000	175210000	166230000	408020000	231520000	176500000	58471	112	55090	355932;355933;355934;355935;355936;355937;355938	480470;480471;480472;480473;480474;480475;480476	480475			7	
YDIEFEDK	1	Unmodified	1057.4604	0.4604064	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	46.983	46.303	2	0.0013022	42061	160511_QHF_FH_JSI12i_1	91.318	82.104			0.97023	1.2553	15.693	4	0	Linear	0.98895	0.81449	NaN	1	0	Median	0.91171	1.0702	NaN	1	0	Median	1.2383	1.1797	NaN	1	0	Median	0.95186	0.99567	NaN	1	0	Median	1030100000	502070000	528060000	218740000	107780000	110960000	252460000	124770000	127690000	321300000	154670000	166630000	237640000	114860000	122770000	58472	1388	55091	355939;355940;355941;355942	480477;480478;480479;480480;480481;480482;480483;480484	480480			8	
YDLFVGSQATDFGEALVR	0	Unmodified	1986.9687	0.96870646	388	O43852	CALU	Calumenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	100.14	100.03	2;3	2.4934E-13	86113	160511_QHF_FH_JSI12i_2	185.87	172.44			1.1392	1.2466	13.51	6	4	Median	1.7009	1.4735	17.347	2	1	Median	1.0377	1.2675	8.6562	2	2	Median	1.1748	1.165	NaN	1	0	Median	1.077	1.1825	NaN	1	1	Median	230720000	114610000	116110000	43230000	18664000	24566000	78021000	40360000	37661000	63860000	31355000	32505000	45612000	24233000	21380000	58473	388	55092	355943;355944;355945;355946;355947;355948	480485;480486;480487;480488;480489;480490;480491;480492;480493;480494	480485			10	
YDLHQVK	1	Unmodified	901.46577	0.46576654	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		16.997	16.743	3	0.0025321	13542	160511_QHF_FH_JSI11i_2	70.912	42.4			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58474	4361	55093	355949	480495	480495			1	
YDLHQVKK	2	Acetyl (K)	1071.5713	0.57129425	4361	Q9BQG0	MYBBP1A	Myb-binding protein 1A	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		35.825	26.005	3	0.008792	15303	160513_QHF_FH_JSI11Kac_5	57.59	39.327			1.774	1.7113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.774	1.7113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3435900	1976200	1459800	0	0	0	0	0	0	3435900	1976200	1459800	0	0	0	58475	4361	55094	355950	480496	480496	3145		1	
YDLPASYKFHK	2	Acetyl (K)	1409.698	0.69795133	4960	Q9NRN9	METTL5	Methyltransferase-like protein 5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.681	53.996	3	0.013247	29265	160513_QHF_FH_JSI11Kac_6	48.568	36.65			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6098700	6098700	0	0	0	0	0	0	0	6098700	6098700	0	0	0	0	58476	4960	55095	355951	480497	480497	3278		1	
YDLSPITVK	1	Unmodified	1034.5648	0.56481189	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	2	1	55.428	54.799	2	0.00065183	49480	160511_QHF_FH_JSI11i_1	76.679	52.707			1.0114	1.0418	14.678	5	0	Median	1.3035	1.0863	NaN	1	0	Median	0.79618	0.94997	NaN	1	0	Median	0.94326	0.94549	26.275	2	0	Median	1.0114	1.0418	NaN	1	0	Median	860530000	447870000	412660000	117820000	52353000	65470000	184420000	98914000	85501000	366690000	186110000	180590000	191590000	110500000	81098000	58477	3953	55096	355952;355953;355954;355955;355956	480498;480499;480500	480498			3	
YDLTPAIQTTSTLYER	0	Unmodified	1870.9313	0.93125832	3074	Q6NUQ4	TMEM214	Transmembrane protein 214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	4	6								2	3	3	2	74.971	74.296	2	5.5826E-12	66089	160511_QHF_FH_JSI10i_2	114.82	100.26			0.93158	0.99021	19.179	8	0	Median	1.3463	1.1158	1.1784	2	0	Median	0.81892	0.98239	1.8713	2	0	Median	1.2531	1.2156	29.749	2	0	Median	0.78731	0.83023	5.8949	2	0	Median	309220000	154820000	154400000	57644000	25123000	32521000	91842000	49937000	41905000	80218000	42460000	37758000	79519000	37299000	42220000	58478	3074	55097	355957;355958;355959;355960;355961;355962;355963;355964;355965;355966	480501;480502;480503;480504;480505;480506;480507;480508;480509;480510;480511;480512	480512			12	
YDLTVPFAR	0	Unmodified	1080.5604	0.56039521	1012;1666	P12081;P49590	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	6.47	3	4						4		2	3	3	3	73.412	69.162	2	4.5526E-05	60476	160511_QHF_FH_JSI12i_2	98.523	73.629			0.9027	0.96326	12.076	11	0	Median	1.2285	1.0271	3.2875	2	0	Median	0.87025	1.0337	11.434	3	0	Plateau	0.96413	0.9197	17.608	3	0	Median	0.9027	0.95459	9.562	3	0	Median	1065800000	540610000	525230000	167850000	66426000	101420000	260790000	142810000	117980000	399090000	198180000	200910000	238100000	133190000	104910000	58479	1012;1666	55098	355967;355968;355969;355970;355971;355972;355973;355974;355975;355976;355977	480513;480514;480515;480516;480517;480518;480519;480520;480521;480522;480523;480524;480525;480526	480515			14	
YDLVQLMALFFHR	0	Unmodified	1651.8545	0.85446874	3832	Q92508	PIEZO1	Piezo-type mechanosensitive ion channel component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	99.572	91.139	3	7.5486E-42	52083	160513_QHF_FH_JSI9Kac_6	164.48	149.09			1.0879	1.1422	23.867	4	0	Median	1.9722	1.7182	NaN	1	0	Median	0.91069	1.0893	NaN	1	0	Median	1.247	1.1976	NaN	1	0	Median	0.94912	0.99768	NaN	1	0	Median	1662900000	745100000	917840000	345850000	113140000	232710000	547380000	276930000	270440000	538100000	238650000	299440000	231620000	116380000	115240000	58480	3832	55099	355978;355979;355980;355981	480527;480528;480529;480530;480531;480532;480533;480534	480529			8	
YDNFAHR	0	Unmodified	921.40931	0.4093143	5278	Q9UFN0	NIPSNAP3A	Protein NipSnap homolog 3A	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	9.5722	9.6209	2;3	0.020418	6961	160511_QHF_FH_JSI12i_3	60.709	53.798			0.93618	0.96452	9.6485	4	1	Linear	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.94363	0.87975	6.5098	2	0	Median	0.85094	0.86288	15.269	2	1	Median	230220000	124360000	105850000	0	0	0	0	0	0	103090000	59259000	43835000	127120000	65104000	62018000	58481	5278	55100	355982;355983;355984;355985	480535;480536;480537	480537			3	
YDNGSGYR	0	Unmodified	930.38316	0.38315913	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	8.0875	7.6913	2	0.0045282	5335	160511_QHF_FH_JSI12i_2	68.422	63.567			0.96337	0.95479	16.921	8	0	Median	1.0348	0.87851	8.9973	2	0	Median	0.74001	0.87832	18.311	2	0	Median	1.0003	0.99424	2.9468	2	0	Median	0.82475	0.87771	36.719	2	0	Median	577920000	293420000	284490000	100980000	46742000	54233000	150830000	81491000	69342000	192050000	91058000	100990000	134060000	74132000	59927000	58482	2265	55101	355986;355987;355988;355989;355990;355991;355992;355993	480538;480539;480540;480541;480542;480543	480540			6	
YDNLEMEYLQK	1	Unmodified	1444.6544	0.65443153	3765	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									2	1		59.943	59.533	2	1.3941E-05	53839	160511_QHF_FH_JSI11i_1	106.62	77.301			1.3563	1.4464	15.235	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3883	1.6109	NaN	1	1	Median	1.3251	1.2986	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	701510000	275120000	426390000	0	0	0	309350000	123410000	185940000	392160000	151710000	240450000	0	0	0	58483	3765	55102	355994;355995;355996	480544;480545;480546	480544			3	
YDNLHLEDLFIGNK	1	Unmodified	1689.8362	0.83623572	5657	Q9Y5B8	NME7	Nucleoside diphosphate kinase 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.777	84.184	3	0.021702	74060	160511_QHF_FH_JSI11i_2	32.152	23.768			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58484	5657	55103	355997	480547	480547			1	
YDNLITPVVDSLK	1	Unmodified	1475.7872	0.78716026	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	87.176	86.62	2	0.0047926	77045	160511_QHF_FH_JSI9i_1	62.408	53.921			1.2724	1.2137	11.952	3	1	Median	1.7708	1.4889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2724	1.2137	NaN	1	0	Median	1.1794	1.2074	NaN	1	0	Median	68401000	32162000	36239000	9056300	3982800	5073500	0	0	0	32651000	16691000	15960000	26694000	11487000	15206000	58485	3675	55104	355998;355999;356000	480548;480549;480550	480550			3	
YDNMAELFAVVK	1	Unmodified	1398.6853	0.68533773	5358	Q9UK41	VPS28	Vacuolar protein sorting-associated protein 28 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	92.07	91.558	2	4.8453E-06	79039	160511_QHF_FH_JSI12i_2	99.752	87.705			0.94902	0.96426	28.359	4	1	Median	1.3351	1.1122	NaN	1	0	Median	0.54017	0.65473	NaN	1	1	Median	1.1737	1.2224	NaN	1	0	Median	0.76738	0.83598	NaN	1	0	Median	126300000	67028000	59274000	25314000	13056000	12258000	26719000	18824000	7895100	36764000	15904000	20860000	37505000	19244000	18261000	58486	5358	55105	356001;356002;356003;356004;356005	480551;480552;480553;480554	480551			4	
YDPDPAPHMENLK	1	Unmodified	1525.6871	0.68712864	4129	Q96IY1	NSL1	Kinetochore-associated protein NSL1 homolog	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	2	0		3									1	1	1	39.872	38.943	3	0.0031281	33449	160511_QHF_FH_JSI11i_2	43.813	36.443			1.5141	1.3365	17.463	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.5141	1.8552	NaN	1	0	Median	1.3554	1.3365	NaN	1	0	Median	1.6136	1.7473	NaN	1	0	Median	111330000	50599000	60730000	0	0	0	31578000	12673000	18905000	47118000	23764000	23354000	32632000	14161000	18471000	58487	4129	55106	356006;356007;356008	480555	480555			1	
YDPEGDNTGEQVAVK	1	Unmodified	1620.7267	0.72674485	1230	P23458	JAK1	Tyrosine-protein kinase JAK1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	32.462	31.858	2	7.5684E-07	28575	160511_QHF_FH_JSI11i_1	136.96	123.36			0.83598	0.77029	10.033	4	0	Median	0.86693	0.71343	NaN	1	0	Median	0.61613	0.71541	NaN	1	0	Median	0.89439	0.86635	NaN	1	0	Median	0.80613	0.82939	NaN	1	0	Median	273010000	139410000	133600000	71499000	35637000	35862000	70361000	36882000	33479000	76853000	37246000	39607000	54298000	29649000	24649000	58488	1230	55107	356009;356010;356011;356012	480556;480557;480558;480559;480560;480561;480562;480563	480557			8	
YDPGALVIPFSGALELK	1	Unmodified	1788.9662	0.96618726	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	101.85	101.73	2	6.6886E-08	89495	160511_QHF_FH_JSI11i_2	135.81	121.88			1.0358	1.1139	15.774	3	0	Median	1.0358	0.87917	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1778	1.1856	NaN	1	0	Median	0.99651	1.1139	NaN	1	0	Median	1066300000	502920000	563390000	212660000	108100000	104550000	0	0	0	342070000	136140000	205920000	511590000	258680000	252910000	58489	4992	55108	356013;356014;356015	480564;480565;480566;480567	480566			4	
YDPINSMLSIYMDTLNIFMR	0	Unmodified	2436.1528	0.15276053	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	2	2		1	103.56	95.703	2;3	3.0807E-248	57897	160513_QHF_FH_JSI10Kac_6	330.52	292.22			1.2522	1.2486	25.512	5	2	Median	1.2687	1.0797	20.548	2	1	Median	1.1457	1.3462	12.096	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7178	1.8719	NaN	1	1	Median	834950000	370900000	464050000	288150000	120760000	167390000	538450000	248680000	289770000	0	0	0	8351100	1466500	6884600	58490	4694	55109	356016;356017;356018;356019;356020	480568;480569;480570;480571;480572;480573	480572			5	
YDPINSMLSIYMDTLNIFMR	0	Oxidation (M)	2452.1477	0.14767515	4694	Q9H3K2	GHITM	Growth hormone-inducible transmembrane protein	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	101.84	92.402	3	6.721E-05	50893	160513_QHF_FH_JSI12Kac_6	70.094	62.101			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	16026000	8402400	7623100	0	0	0	0	0	0	0	0	0	16026000	8402400	7623100	58491	4694	55109	356021	480574	480574		2516	1	
YDPNVYSIK	1	Unmodified	1097.5393	0.53932542	859	P06756	ITGAV	Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	42.247	41.619	2	0.010039	37460	160511_QHF_FH_JSI10i_1	50.805	11.142			0.5668	0.58078	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5668	0.58078	NaN	1	0	Median	69041000	41196000	27845000	0	0	0	0	0	0	0	0	0	69041000	41196000	27845000	58492	859	55110	356022;356023;356024	480575;480576;480577	480576			3	
YDPPLEDGAMPSAR	0	Unmodified	1517.682	0.68204326	1607	P47756	CAPZB	F-actin-capping protein subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	4	2								1	3	1	1	50.606	49.876	2	1.318E-06	44867	160511_QHF_FH_JSI10i_1	134.13	93.406			0.90532	0.99301	2.949	5	1	Median	1.1999	0.99348	NaN	1	0	Median	0.83693	1.008	3.5251	2	1	Median	1.0302	0.99301	NaN	1	0	Median	0.90532	0.95156	NaN	1	0	Median	2138800000	1142200000	996600000	519930000	246950000	272980000	604310000	365150000	239160000	566520000	265680000	300830000	448010000	264390000	183620000	58493	1607	55111	356025;356026;356027;356028;356029;356030	480578;480579;480580;480581;480582;480583;480584;480585;480586;480587	480583			10	
YDPSIGIYGLDFYVVLGRPGFSIADK	1	Unmodified	2861.464	0.46398222	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	1	3	97.29	88.867	2;3	2.9267E-270	53086	160513_QHF_FH_JSI10Kac_6	331.8	283.68			0.95119	0.98867	10.239	8	2	Median	1.1935	1.0015	3.305	2	0	Median	0.83528	1.0005	0.21308	2	0	Median	0.99391	0.95196	NaN	1	0	Median	0.9103	0.9656	18.742	3	2	Median	4016200000	2030300000	1985900000	1122600000	493090000	629540000	1861900000	1014400000	847440000	614110000	319080000	295030000	417550000	203650000	213900000	58494	2038	55112	356031;356032;356033;356034;356035;356036;356037;356038	480588;480589;480590;480591;480592;480593;480594;480595;480596;480597;480598;480599;480600;480601	480601			14	
YDPSIGIYGLDFYVVLGRPGFSIADKK	2	Unmodified	2989.5589	0.55894523	2038	P62913	RPL11	60S ribosomal protein L11	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	95.616	87.558	3;4	6.9932E-58	49121	160513_QHF_FH_JSI9Kac_6	182.39	165.59			0.86158	0.84323	9.9893	6	0	Median	0.95353	0.81521	2.6143	2	0	Median	0.68616	0.81316	7.3027	2	0	Median	NaN	NaN	NaN	0	0	Median	0.8785	0.93925	12.9	2	0	Median	1839500000	1030400000	809100000	434100000	225400000	208700000	898920000	539130000	359790000	0	0	0	506430000	265830000	240610000	58495	2038	55113	356039;356040;356041;356042;356043;356044	480602;480603;480604;480605;480606;480607;480608;480609;480610;480611	480603			10	
YDPSLTFSENVDLTEPIISR	0	Unmodified	2295.1271	0.12705759	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									1	2	3	97.093	96.836	2;3	6.7248E-43	87783	160511_QHF_FH_JSI10i_1	206.63	185.96			1.064	1.1163	23.179	6	3	Median	NaN	NaN	NaN	0	0	Median	0.76652	0.91268	NaN	1	0	Median	1.0444	1.0167	13.891	2	1	Median	1.2682	1.3191	20.905	3	2	Median	104310000	53529000	50785000	0	0	0	43698000	22979000	20720000	21400000	11304000	10096000	39216000	19247000	19969000	58496	1674	55114	356045;356046;356047;356048;356049;356050	480612;480613;480614;480615;480616;480617;480618;480619;480620	480619			9	
YDPTIEDFYRK	1	Unmodified	1445.6827	0.68269519	5598	Q9Y3L5;P10114;P61225	RAP2C;RAP2A;RAP2B	Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	56.672	55.869	3	4.7798E-05	49289	160511_QHF_FH_JSI10i_2	63.401	59.183			0.89248	0.89363	14.496	5	0	Median	1.0294	0.89363	NaN	1	0	Median	0.6989	0.83791	NaN	1	0	Median	0.89248	0.91654	NaN	1	0	Median	0.90144	0.96232	26.586	2	0	Median	494190000	256440000	237750000	77932000	29771000	48161000	151920000	92208000	59714000	159300000	80573000	78730000	105040000	53893000	51145000	58497	5598	55115	356051;356052;356053;356054;356055	480621;480622;480623;480624	480624			3	
YDPTIEDSYRK	1	Unmodified	1385.6463	0.64630969	1946;2023	P61224;P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.48	4	4	1				1	5		3	3	2	7	34.144	29.804	2;3	8.5255E-06	25145	160511_QHF_FH_JSI12i_2	88.155	78.103			1.0722	1.16	48.25	15	5	Median	1.4165	1.1745	65.987	3	2	Median	0.9669	1.16	92.318	3	1	Median	1.2364	1.2129	10.926	2	0	Median	1.0061	1.0952	30.646	7	2	Median	1502500000	731880000	770660000	132700000	53563000	79136000	146660000	68633000	78027000	194720000	82766000	111950000	1028500000	526920000	501550000	58498	1946;2023	55116	356056;356057;356058;356059;356060;356061;356062;356063;356064;356065;356066;356067;356068;356069;356070	480625;480626;480627;480628;480629;480630;480631;480632;480633;480634;480635;480636;480637;480638;480639;480640;480641	480629			17	
YDSIPVSTSLLGDTSDTTSTGLAQR	0	Unmodified	2584.2504	0.2504202	2901	Q5JS54	PSMG4	Proteasome assembly chaperone 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	2	1	1	81.723	81.318	2;3	1.6227E-45	74092	160511_QHF_FH_JSI12i_1	197.49	189.89			0.94283	0.97568	6.9486	5	0	Median	1.1448	0.97568	NaN	1	0	Median	0.82168	0.95299	12.169	2	0	Median	1.0735	1.0308	NaN	1	0	Median	0.94283	0.95604	NaN	1	0	Median	367550000	210660000	156890000	37620000	17800000	19820000	253500000	152240000	101260000	47780000	25525000	22255000	28650000	15087000	13563000	58499	2901	55117	356071;356072;356073;356074;356075	480642;480643;480644;480645;480646;480647;480648;480649;480650	480645			9	
YDSPINSASHIPSSK	1	Unmodified	1601.7686	0.76855009	181	O14639	ABLIM1	Actin-binding LIM protein 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	35.957	35.812	3	5.1654E-05	30397	160511_QHF_FH_JSI12i_3	85.982	78.942			0.99484	1.0115	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99484	1.0115	NaN	1	0	Median	75336000	38850000	36486000	0	0	0	0	0	0	0	0	0	75336000	38850000	36486000	58500	181	55118	356076	480651;480652	480651			2	
YDSWHKEVLSK	2	Acetyl (K)	1432.6987	0.69867961	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		52.351	42.626	3	0.0014704	23032	160513_QHF_FH_JSI11Kac_6	67.964	54.763			0.73763	0.69486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73763	0.69486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28791000	19365000	9425800	0	0	0	0	0	0	28791000	19365000	9425800	0	0	0	58501	2517	55119	356077	480653	480653	2512		1	
YDTDFYILDK	1	Unmodified	1291.5972	0.59723423	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0		By matching		By MS/MS	1	0	2										1		1	72.252	71.858	2	0.0014431	65579	160511_QHF_FH_JSI12i_1	76.943	43.681			1.9779	2.2303	5.5836	2	0	Median	NaN	NaN	NaN	0	0	Median	1.7597	2.144	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.2232	2.3201	NaN	1	0	Median	114280000	42432000	71849000	0	0	0	65764000	22767000	42997000	0	0	0	48517000	19666000	28852000	58502	1064	55120	356078;356079	480654	480654			1	
YDTDGSK	1	Unmodified	784.32391	0.32391291	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			4.7238	4.4847	2	0.010355	2331	160511_QHF_FH_JSI10i_1	75.189	59.75			1.0431	1.2729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0431	1.2729	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	277120000	148130000	128990000	0	0	0	277120000	148130000	128990000	0	0	0	0	0	0	58503	1939	55121	356080	480655;480656	480655			2	
YDTDGSKWIK	2	Acetyl (K)	1253.5928	0.59281755	1939	P61158	ACTR3	Actin-related protein 3	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	56.66	46.048	2	0.00095964	26006	160513_QHF_FH_JSI12Kac_4	87.913	72.251			1.039	1.1318	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.039	1.1318	NaN	1	0	Median	9721900	5810900	3911000	0	0	0	0	0	0	0	0	0	9721900	5810900	3911000	58504	1939	55122	356081	480657	480657	1949		1	
YDVEIVEEYFAR	0	Unmodified	1531.7195	0.71947463	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		91.111	90.595	2	0.002125	79753	160511_QHF_FH_JSI11i_2	72.006	62.573			0.55936	0.55023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.55936	0.55023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12684000	9400200	3283800	0	0	0	0	0	0	12684000	9400200	3283800	0	0	0	58505	2947	55123	356082	480658	480658			1	
YDVQHLQTALR	0	Unmodified	1342.6993	0.69934831	184	O14653	GOSR2	Golgi SNAP receptor complex member 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		4										2	2	45.179	44.237	2;3	7.2018E-05	37989	160511_QHF_FH_JSI11i_2	72.29	60.371			0.95527	1.0245	7.3419	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.93227	0.97267	NaN	1	1	Median	0.97884	1.0791	NaN	1	0	Median	81668000	38280000	43388000	0	0	0	0	0	0	22447000	8599200	13848000	59220000	29681000	29540000	58506	184	55124	356083;356084;356085;356086	480659;480660;480661;480662	480662			4	
YDWDLLAAR	0	Unmodified	1121.5506	0.55055881	2609	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.951	74.093	2	1.3115E-05	63947	160511_QHF_FH_JSI12i_2	110.12	94.969			1.0052	1.0521	1.0635	4	0	Linear	1.2277	1.0228	NaN	1	0	Median	0.83955	1.04	NaN	1	0	Median	1.0803	1.0492	NaN	1	0	Median	0.93528	1.0347	NaN	1	0	Median	378170000	191250000	186920000	63479000	32167000	31312000	88858000	47978000	40880000	148280000	72450000	75831000	77551000	38651000	38900000	58507	2609	55125	356087;356088;356089;356090	480663;480664;480665;480666;480667;480668;480669;480670	480664			8	
YDYEEVEAEGANK	1	Unmodified	1515.6365	0.63653286	1460	P36871	PGM1	Phosphoglucomutase-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	8					6				2	4	4	4	40.237	35.996	2;3	4.3231E-22	32283	160511_QHF_FH_JSI11i_1	174.4	168.36			0.90438	0.95036	18.43	14	3	Median	1.107	0.91381	6.5855	2	0	Median	0.90038	1.0545	28.287	4	2	Median	1.162	1.124	16.621	4	0	Linear	0.87472	0.93446	16.451	4	1	Median	3558700000	1776700000	1781900000	551170000	192880000	358300000	979490000	498570000	480920000	1209000000	638860000	570130000	819000000	446430000	372570000	58508	1460	55126	356091;356092;356093;356094;356095;356096;356097;356098;356099;356100;356101;356102;356103;356104	480671;480672;480673;480674;480675;480676;480677;480678;480679;480680;480681;480682;480683;480684;480685;480686;480687;480688;480689;480690;480691;480692;480693;480694;480695;480696	480671			25	
YDYNSGEELESYK	1	Unmodified	1595.6627	0.66274761	5595	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.4	4.8	4					1				1	1	1	2	47.16	44.794	2	2.2909E-66	40845	160511_QHF_FH_JSI12i_1	227.31	219.39			0.84853	0.9633	16.71	5	0	Median	0.83435	0.68061	NaN	1	0	Median	0.84853	1.0033	NaN	1	0	Median	1.0303	1.0031	NaN	1	0	Median	0.83053	0.89408	10.546	2	0	Median	3003500000	1747300000	1256300000	439380000	231430000	207950000	906260000	562930000	343330000	722110000	386450000	335650000	935770000	566450000	369320000	58509	5595	55127	356105;356106;356107;356108;356109	480697;480698;480699;480700;480701;480702;480703;480704;480705;480706;480707;480708;480709;480710;480711;480712;480713	480704			17	
YDYQRQPDSGISSIR	0	Unmodified	1783.8489	0.84892567	816	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			4							1	1	1	1	38.138	37.355	3	1.3507E-05	32725	160511_QHF_FH_JSI11i_3	121.95	112.9			1.0079	1.0475	16.149	4	0	Median	1.7002	1.3782	NaN	1	0	Median	0.89401	1.0494	NaN	1	0	Median	1.1362	1.0455	NaN	1	0	Median	0.8112	0.94607	NaN	1	0	Median	471080000	210720000	260360000	38894000	14118000	24776000	209110000	99807000	109310000	150200000	57738000	92460000	72878000	39061000	33817000	58510	816	55128	356110;356111;356112;356113	480714;480715;480716;480717;480718	480714			5	
YDYVFPENGLVAYK	1	Unmodified	1676.8086	0.80862399	275	O15305	PMM2	Phosphomannomutase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.4	0.49	6	4								2	3	3	2	80.535	79.981	2	6.3315E-07	72911	160511_QHF_FH_JSI12i_1	137.89	125.32			0.87045	0.94868	14.638	10	8	Median	1.3328	1.1206	7.915	2	2	Median	0.80601	1.0038	13.764	3	3	Median	0.87183	0.86194	9.8216	3	3	Median	0.86683	0.94868	5.7887	2	0	Median	880520000	477490000	403040000	114110000	49371000	64739000	281730000	157960000	123770000	293060000	158640000	134420000	191620000	111520000	80104000	58511	275	55129	356114;356115;356116;356117;356118;356119;356120;356121;356122;356123	480719;480720;480721;480722;480723;480724;480725;480726;480727;480728;480729	480723			11	
YDYVLTGYTR	0	Unmodified	1249.5979	0.59790293	165	O00764	PDXK	Pyridoxal kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.94	6.58	2	4	2				2	4	3	5	5	3	4	56.505	50.561	2	4.3744E-06	26694	160513_QHF_FH_JSI9Kac_5	116.52	103.89			1.1732	1.1665	30.543	15	3	Median	2.0261	1.7254	30.456	5	3	Median	1.1732	1.4586	19.04	3	0	Plateau	1.0739	1.0574	14.756	3	0	Median	1.2456	1.0337	18.239	4	0	Linear	1844100000	779290000	1064800000	282610000	91563000	191040000	364320000	183920000	180390000	666300000	302290000	364010000	530830000	201510000	329320000	58512	165	55130	356124;356125;356126;356127;356128;356129;356130;356131;356132;356133;356134;356135;356136;356137;356138;356139;356140	480730;480731;480732;480733;480734;480735;480736;480737;480738;480739;480740;480741;480742;480743;480744;480745;480746	480734			16	
YEAAGEAVK	1	Unmodified	936.45526	0.45526144	264	O15226	NKRF	NF-kappa-B-repressing factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	1	3	12.292	11.887	2	0.00067613	9460	160511_QHF_FH_JSI11i_1	76.221	40.341			1.1096	1.1934	49.903	6	3	Median	2.2051	1.8231	NaN	1	1	Median	1.1136	1.3077	NaN	1	0	Median	1.1057	1.0892	NaN	1	0	Median	0.76178	0.79244	64.419	3	2	Median	681470000	339720000	341750000	94164000	34971000	59193000	107840000	65989000	41854000	114660000	55501000	59162000	364790000	183250000	181540000	58513	264	55131	356141;356142;356143;356144;356145;356146	480747;480748;480749;480750;480751	480747			5	
YEAAGTLVTLSSAPTAIK	1	Unmodified	1791.9618	0.96183016	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.45	4.63	9	8	2					3		5	5	8	4	74.991	72.88	2;3	1.2515E-32	65835	160511_QHF_FH_JSI11i_3	153.39	130.17			0.91935	0.94401	13.102	21	3	Median	1.1351	0.97227	7.9429	5	0	Median	0.8129	0.96945	10.879	5	2	Median	0.86516	0.89133	15.613	7	1	Median	0.91015	0.96883	10.19	4	0	Median	1825700000	921440000	904210000	340910000	161950000	178970000	524390000	280290000	244100000	542350000	263510000	278840000	418000000	215700000	202300000	58514	1804	55132	356147;356148;356149;356150;356151;356152;356153;356154;356155;356156;356157;356158;356159;356160;356161;356162;356163;356164;356165;356166;356167;356168	480752;480753;480754;480755;480756;480757;480758;480759;480760;480761;480762;480763;480764;480765;480766;480767;480768;480769;480770;480771;480772;480773;480774;480775;480776;480777;480778;480779;480780;480781;480782;480783;480784;480785;480786;480787;480788;480789	480752			38	
YEAANWK	1	Unmodified	880.40792	0.40791731	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	21.09	19.955	2	0.045521	16497	160511_QHF_FH_JSI12i_2	48.504	29.027			0.5624	0.61898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5624	0.61898	NaN	1	1	Median	179860000	103110000	76745000	0	0	0	0	0	0	0	0	0	179860000	103110000	76745000	58515	1922	55133	356169	480790	480790			1	
YEAANWKYK	2	Acetyl (K)	1213.5768	0.57677356	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		49.569	39.025	2	0.0029642	21801	160513_QHF_FH_JSI11Kac_5	81.548	73.227			0.34025	0.32467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.34025	0.32467	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	6731800	5152700	1579100	0	0	0	0	0	0	6731800	5152700	1579100	0	0	0	58516	1922	55134	356170	480791	480791	1927;1928		1	
YEAIVEENK	1	Unmodified	1093.5292	0.52915466	4264	Q99417	MYCBP	C-Myc-binding protein	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			22.479	22.203	2	0.0096681	19431	160511_QHF_FH_JSI10i_1	60.019	29.332			0.54458	0.66191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.54458	0.66191	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65609000	38962000	26647000	0	0	0	65609000	38962000	26647000	0	0	0	0	0	0	58517	4264	55135	356171	480792	480792			1	
YEAIVEENKK	2	Unmodified	1221.6241	0.62411768	4264	Q99417	MYCBP	C-Myc-binding protein	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	16.705	15.728	2	0.01981	12804	160511_QHF_FH_JSI12i_2	47.198	18.111			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58518	4264	55136	356172	480793	480793			1	
YEAPQATDGLAGALDAR	0	Unmodified	1717.8271	0.8271276	448	O60784	TOM1	Target of Myb protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	60.859	60.366	2	1.3125E-10	54633	160511_QHF_FH_JSI10i_1	135.58	109.54			0.85097	0.78709	12.268	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.85097	1.0053	NaN	1	1	Median	0.89444	0.87573	NaN	1	1	Median	0.73812	0.78709	NaN	1	1	Median	127560000	75101000	52455000	0	0	0	37621000	22578000	15043000	45268000	25118000	20151000	44666000	27406000	17261000	58519	448	55137	356173;356174;356175;356176	480794;480795;480796;480797	480796			4	
YEAPWTVYAMNWSVRPDK	1	Unmodified	2212.0412	0.041159893	1970	P61962	DCAF7	DDB1- and CUL4-associated factor 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			84.813	78.164	3	9.1661E-05	44049	160513_QHF_FH_JSI10Kac_6	140.28	126.58			0.81808	0.9838	11.764	3	3	Plateau	1.3954	1.2131	NaN	1	1	Median	0.85697	1.0078	6.8944	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	338300000	163560000	174750000	34914000	11112000	23802000	303390000	152450000	150940000	0	0	0	0	0	0	58520	1970	55138	356177;356178;356179	480798;480799;480800	480799			3	
YEAQGDKAK	2	Acetyl (K)	1050.4982	0.49818889	507	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	yes	yes	1	0	0	1				By MS/MS	13	0						1							1	11.113	4.0708	2	0.040941	4570	160513_QHF_FH_JSI12Kac_3	53.968	31.837			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2641400	2641400	0	0	0	0	0	0	0	0	0	0	2641400	2641400	0	58521	507	55139	356180	480801	480801			1	
YEATSVQQK	1	Unmodified	1052.5138	0.51383895	2906	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	10.268	9.8878	2	5.6693E-06	7421	160511_QHF_FH_JSI9i_1	114.89	96.164			0.83877	0.94583	8.7729	4	0	Linear	1.0009	0.81553	NaN	1	0	Median	0.73842	0.89613	NaN	1	0	Median	0.79071	0.76966	NaN	1	0	Median	0.88974	0.93325	NaN	1	0	Median	1131400000	606590000	524840000	277910000	136140000	141770000	286900000	165740000	121160000	264300000	142510000	121790000	302330000	162200000	140120000	58522	2906	55140	356181;356182;356183;356184	480802;480803;480804;480805;480806;480807;480808;480809	480809			8	
YEAVGSVHQAWEAIR	0	Unmodified	1714.8427	0.84271808	4456	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	4	3	3	59.241	55.68	2;3	1.1689E-41	47990	160511_QHF_FH_JSI12i_3	197.56	181.93			0.9179	0.8996	13.724	8	1	Median	1.0786	0.93317	NaN	1	0	Median	0.78188	0.94235	19.792	2	1	Median	0.9179	0.86683	0.068172	2	0	Median	1.1065	1.1297	20.117	3	0	Plateau	839350000	417540000	421810000	48081000	18129000	29952000	153120000	83060000	70063000	319930000	154110000	165810000	318220000	162230000	155990000	58523	4456	55141	356185;356186;356187;356188;356189;356190;356191;356192;356193;356194;356195;356196;356197	480810;480811;480812;480813;480814;480815;480816;480817;480818;480819;480820;480821;480822;480823;480824;480825	480823			15	
YEAWLAEAESR	0	Unmodified	1323.6095	0.60953025	2690	Q15642	TRIP10	Cdc42-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	54.689	53.58	2	1.825E-05	45843	160511_QHF_FH_JSI12i_2	105.98	89.837			1.2105	1.3687	29.013	3	2	Median	1.2105	1.0164	NaN	1	0	Median	1.1467	1.3687	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6823	1.8156	NaN	1	1	Median	182320000	84718000	97604000	61847000	31738000	30109000	63886000	32012000	31875000	0	0	0	56588000	20968000	35620000	58524	2690	55142	356198;356199;356200	480826;480827;480828	480826			3	
YEDAVQFIR	0	Unmodified	1139.5611	0.56112349	3931;2334	Q12974;Q93096	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	no	no	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	15	0								3		1	1		1	61.217	50.544	2	0.0049917	25622	160513_QHF_FH_JSI10Kac_5	62.546	33.385			1.7983	1.5186	NaN	1	1	Median	1.7983	1.5186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10757000	3945600	6811500	10757000	3945600	6811500	0	0	0	0	0	0	0	0	0	58525	2334;3931	55143	356201;356202;356203	480829;480830;480831	480831			3	
YEDAYQYQNIFGPLVK	1	Unmodified	1946.9414	0.94142907	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	8	6								3	5	2	4	92.229	91.825	2;3	9.4114E-17	81759	160511_QHF_FH_JSI9i_1	122.42	90.413			0.9158	0.9046	16.631	8	3	Median	1.0004	0.8715	NaN	1	0	Median	1.039	1.1814	2.1373	2	2	Median	0.9158	0.9172	1.0671	2	0	Median	0.86484	0.87922	12.699	3	1	Median	181270000	89650000	91620000	15145000	8733000	6411800	54942000	26147000	28795000	65043000	32971000	32072000	46141000	21799000	24341000	58526	3904	55144	356204;356205;356206;356207;356208;356209;356210;356211;356212;356213;356214;356215;356216;356217	480832;480833;480834;480835;480836;480837;480838;480839;480840;480841;480842;480843;480844;480845;480846;480847	480842			16	
YEDEINK	1	Unmodified	909.40798	0.40797689	51;810;79;57;45;54;78;63	CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__H-INV:HIT000016045;CON__O95678;O95678;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q5XKE5;Q5XKE5;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT75;KRT3;KRT76;KRT5;KRT79;KRT1;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	11.75	11.347	2	0.0019594	9243	160511_QHF_FH_JSI12i_1	114.72	64.601		+	1.2062	1.2253	54.983	4	1	Median	1.1196	0.92662	NaN	1	0	Median	2.6972	3.2082	NaN	1	1	Median	1.149	1.1113	NaN	1	0	Median	1.2662	1.3509	NaN	1	0	Median	2258200000	1096600000	1161600000	539010000	303880000	235130000	571750000	269520000	302230000	485200000	231310000	253900000	662200000	291900000	370300000	58527	51;45;54;57;78;79;810;63	55145	356218;356219;356220;356221	480848;480849;480850;480851;480852;480853;480854	480851			7	
YEDEINKR	1	Unmodified	1065.5091	0.50908792	51;810;79;57;45;54;63	CON__P05787;P05787;CON__H-INV:HIT000016045;CON__O95678;O95678;CON__P12035;P12035;CON__Q01546;Q01546;CON__P13647;P13647;CON__Q922U2;CON__Q5XQN5;P04264;CON__P04264;CON__P35908v2;CON__P35908;P35908;CON__Q3TTY5	KRT8;KRT75;KRT3;KRT76;KRT5;KRT1;KRT2	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	8.9391	8.5219	2;3	0.0015821	6148	160511_QHF_FH_JSI11i_2	69.423	47.976		+	1.204	1.1346	28.182	7	7	Median	1.2838	1.1101	3.0897	2	2	Median	0.93074	1.1424	31.383	2	2	Median	1.5111	1.5418	32.804	2	2	Median	0.77715	0.83832	NaN	1	1	Median	1512200000	677130000	835070000	295050000	141260000	153790000	326570000	141150000	185420000	651540000	268230000	383310000	239040000	126490000	112550000	58528	51;45;54;57;79;810;63	55146	356222;356223;356224;356225;356226;356227;356228	480855;480856;480857;480858;480859;480860;480861	480858			7	
YEDEINRR	0	Unmodified	1093.5152	0.51523593	53	CON__P08729			yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	2	1	8.6007	8.5065	2;3	0.0071763	6132	160511_QHF_FH_JSI11i_3	60.682	48.913		+	1.424	1.3873	42.858	4	3	Median	NaN	NaN	NaN	0	0	Median	0.79298	0.97804	NaN	1	1	Median	2.0771	1.9238	49.093	2	1	Median	1.3997	1.4156	NaN	1	1	Median	246810000	95629000	151180000	0	0	0	47260000	23696000	23564000	136770000	47909000	88856000	62785000	24024000	38761000	58529	53	55147	356229;356230;356231;356232	480862;480863;480864;480865	480862			4	
YEDFKEEGSENAVK	2	Unmodified	1643.7315	0.73149588	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4									2	2	2	25.386	24.705	2;3	6.2543E-05	20584	160511_QHF_FH_JSI11i_2	126.76	102.68			0.82457	0.83696	54.429	5	5	Median	NaN	NaN	NaN	0	0	Median	1.0506	1.302	NaN	1	1	Median	0.72306	0.72579	20.153	2	2	Median	0.72938	0.78964	94.976	2	2	Median	402360000	197610000	204750000	0	0	0	111620000	57388000	54231000	208790000	104320000	104480000	81943000	35902000	46041000	58530	4992	55148	356233;356234;356235;356236;356237;356238	480866;480867;480868;480869;480870;480871;480872	480870			7	
YEDFSNLGTTHLLR	0	Unmodified	1664.8158	0.81583463	1216	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.16		8	2						2	3	2	4	3	64.698	62.566	2;3	2.2639E-21	54468	160511_QHF_FH_JSI11i_2	174.42	124.38			1.0471	1.0621	13.428	12	1	Median	1.3828	1.1546	11.56	3	0	Median	0.84877	1.0305	1.3194	2	0	Median	1.0471	1.0688	14.035	4	0	Median	0.95438	1.0717	22.281	3	1	Median	2389200000	1144900000	1244300000	284050000	121700000	162340000	590270000	304670000	285600000	886560000	413690000	472880000	628300000	304830000	323470000	58531	1216	55149	356239;356240;356241;356242;356243;356244;356245;356246;356247;356248;356249;356250	480873;480874;480875;480876;480877;480878;480879;480880;480881;480882;480883;480884;480885;480886;480887;480888;480889;480890;480891;480892;480893	480888			21	
YEDFVVDGFNVLYNK	1	Unmodified	1820.8621	0.86211612	3111	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		6								4		1	1	99.24	99.091	2;3	9.9885E-05	86979	160511_QHF_FH_JSI11i_2	104.87	91.439			0.9288	0.82158	11.851	4	3	Median	0.95482	0.82158	6.591	2	2	Median	NaN	NaN	NaN	0	0	Median	0.94766	0.97155	NaN	1	0	Median	0.70362	0.74082	NaN	1	1	Median	57618000	33122000	24496000	22396000	12315000	10081000	0	0	0	21241000	13542000	7698700	13981000	7265000	6716100	58532	3111	55150	356251;356252;356253;356254;356255;356256	480894;480895;480896;480897;480898;480899;480900	480900			7	
YEDICPSTHNMDVPNIK	1	Unmodified	2031.903	0.90301143	2060	P63241;Q9GZV4;Q6IS14	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	yes	no	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	54.809	53.867	3	9.4424E-05	46651	160511_QHF_FH_JSI11i_2	65.949	60.521			1.2974	1.3875	43.755	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9613	1.0183	NaN	1	0	Median	1.751	1.8906	NaN	1	0	Median	70657000	28452000	42206000	0	0	0	0	0	0	39179000	18820000	20359000	31478000	9631600	21847000	58533	2060	55151	356257;356258	480901	480901			1	
YEDMAAFMK	1	Unmodified	1104.462	0.46200307	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.6	0.49	2	3								1	2	1	1	54.649	53.943	2	0.00010355	46610	160511_QHF_FH_JSI11i_2	93.429	66.467			0.81631	0.82837	4.1218	5	1	Median	0.98981	0.84814	NaN	1	0	Median	0.66798	0.81987	1.227	2	1	Median	0.81631	0.82837	NaN	1	0	Median	0.86841	0.90318	NaN	1	0	Median	1100400000	591930000	508510000	193050000	90198000	102860000	444050000	225440000	218620000	313330000	200610000	112730000	149990000	75687000	74305000	58534	1385	55152	356259;356260;356261;356262;356263	480902;480903;480904;480905;480906	480905			5	
YEEENFYLEPYLK	1	Unmodified	1735.7981	0.79811888	1066	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							3	2	1	2	80.919	80.318	2	3.6436E-15	73184	160511_QHF_FH_JSI11i_1	187.85	176.32			0.81617	0.86686	18.366	7	4	Median	1.2243	1.0546	13.44	2	2	Median	0.61748	0.7388	9.4723	2	2	Median	0.78431	0.7611	NaN	1	0	Median	0.87948	0.94877	12.769	2	0	Median	1084500000	625460000	459070000	39724000	17403000	22320000	405460000	274830000	130640000	271160000	142210000	128950000	368190000	191020000	177170000	58535	1066	55153	356264;356265;356266;356267;356268;356269;356270;356271	480907;480908;480909;480910;480911;480912;480913;480914;480915;480916;480917;480918	480908			12	
YEEGINIHLAK	1	Unmodified	1285.6667	0.6666512	2338	Q12996	CSTF3	Cleavage stimulation factor subunit 3	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	44.149	43.214	3	3.9516E-05	37114	160511_QHF_FH_JSI12i_2	68.536	53.334			1.0218	1.0657	13.06	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1591	1.1688	NaN	1	0	Median	0.90085	0.97165	NaN	1	0	Median	128090000	63383000	64708000	0	0	0	0	0	0	71471000	32675000	38796000	56620000	30708000	25912000	58536	2338	55154	356272;356273	480919	480919			1	
YEEIDNAPEER	0	Unmodified	1363.5892	0.58918874	1658	P49411	TUFM	Elongation factor Tu, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	5.88	3					2				1	1	1	2	25.339	21.601	2	2.2889E-07	19260	160511_QHF_FH_JSI12i_1	121.9	107.22			1.1754	1.1798	23.924	5	2	Median	1.1754	0.95826	NaN	1	0	Median	1.0043	1.1798	NaN	1	1	Median	1.4899	1.4006	NaN	1	0	Median	1.1929	1.2615	38.625	2	1	Median	402000000	186820000	215170000	132490000	58592000	73894000	122660000	60496000	62160000	2593100	1015600	1577400	144260000	66719000	77541000	58537	1658	55155	356274;356275;356276;356277;356278	480920;480921;480922;480923;480924;480925;480926;480927	480921			8	
YEELFPAFSDSR	0	Unmodified	1459.662	0.66195975	1838	P54920	NAPA	Alpha-soluble NSF attachment protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.97	4	4	2					2		3	3	4	2	74.14	72.388	2	3.1541E-07	64633	160511_QHF_FH_JSI10i_2	127.83	119.61			0.90989	0.95201	13.783	10	5	Median	1.2269	1.0305	9.4788	2	1	Median	0.77614	0.94046	18.784	3	1	Median	0.95856	0.91643	9.4039	3	2	Median	0.88123	0.96441	20.557	2	1	Median	757540000	370820000	386720000	118960000	49093000	69868000	216780000	122050000	94733000	238620000	107520000	131110000	183180000	92168000	91008000	58538	1838	55156	356279;356280;356281;356282;356283;356284;356285;356286;356287;356288;356289;356290	480928;480929;480930;480931;480932;480933;480934;480935;480936;480937;480938;480939;480940;480941;480942;480943;480944;480945	480943			18	
YEELQSLAGK	1	Unmodified	1136.5714	0.57135383	51	CON__P05787;P05787;CON__H-INV:HIT000292931	KRT8	Keratin, type II cytoskeletal 8	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.32	4.17	9	7	3			1	2			6	5	6	5	40.709	38.65	2	8.4267E-12	22571	160513_QHF_FH_JSI11Kac_4	147.2	27.08		+	1.1958	1.3017	125.36	22	15	Median	1.8724	1.5574	208.58	6	5	Median	0.67923	0.78726	86.617	5	4	Median	1.114	1.0635	84.861	6	4	Median	1.1798	1.2776	82.176	5	2	Median	28709000000	12180000000	16530000000	7285800000	2313900000	4971800000	7224800000	3709200000	3515500000	7266400000	3254300000	4012100000	6932300000	2902300000	4030100000	58539	51	55157	356291;356292;356293;356294;356295;356296;356297;356298;356299;356300;356301;356302;356303;356304;356305;356306;356307;356308;356309;356310;356311;356312	480946;480947;480948;480949;480950;480951;480952;480953;480954;480955;480956;480957;480958;480959;480960;480961;480962;480963;480964;480965;480966;480967;480968;480969;480970;480971;480972;480973;480974;480975;480976;480977;480978	480962			33	
YEELQSLAGKHGDDLR	1	Acetyl (K)	1871.9014	0.90135517	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	1			By MS/MS		15	0								1				1		61.491	50.584	3	0.00034727	27592	160513_QHF_FH_JSI11Kac_5	82.349	62.771		+	0.10251	0.099671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10251	0.099671	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2865100	2665700	199430	0	0	0	0	0	0	2865100	2665700	199430	0	0	0	58540	51	55158	356313	480979	480979	31		1	
YEELQSLAGKHGDDLRR	1	Acetyl (K)	2028.0025	0.0024662011	51	CON__P05787;P05787	KRT8	Keratin, type II cytoskeletal 8	yes	no	1	0	0	2		By MS/MS	By MS/MS		16	0									3		1	2		53.394	44.042	3;4	0.0025212	23826	160513_QHF_FH_JSI11Kac_6	62.813	54.989		+	0.3599	0.34044	92.931	3	1	Median	NaN	NaN	NaN	0	0	Median	1.2718	1.5025	NaN	1	0	Median	0.31898	0.30405	15.988	2	1	Median	NaN	NaN	NaN	0	0	Median	314690000	259010000	55678000	0	0	0	23351000	7062500	16288000	291340000	251950000	39390000	0	0	0	58541	51	55159	356314;356315;356316	480980;480981;480982	480980	31		2	
YEELQVTAGK	1	Unmodified	1136.5714	0.57135383	78	CON__Q5XKE5;Q5XKE5	KRT79	Keratin, type II cytoskeletal 79	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.18	6.06	3	1	1			3	2	1		3	3	3	2	44.411	38.709	2	7.3248E-06	20969	160513_QHF_FH_JSI10Kac_3	110.87	0		+	1.212	1.3263	71.698	11	5	Median	1.0493	0.884	58.84	3	2	Median	0.32934	0.39476	62.599	3	1	Plateau	1.3555	3.0187	52.811	3	1	Plateau	2.2879	2.4602	87.381	2	1	Median	10459000000	4644900000	5814000000	511070000	208880000	302190000	3286900000	2084700000	1202200000	3631300000	1263000000	2368300000	3029800000	1088400000	1941400000	58542	78	55160	356317;356318;356319;356320;356321;356322;356323;356324;356325;356326;356327	480983;480984;480985;480986;480987;480988;480989;480990;480991;480992;480993;480994	480994			12	
YEENPLHFLMGVWGSAFSILFNR	0	Unmodified	2726.3315	0.33152825	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				78.153	77.428	3	0.053039	68225	160511_QHF_FH_JSI9i_2	17.749	14.65			0.22368	0.1913	NaN	1	1	Median	0.22368	0.1913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88244000	74625000	13619000	88244000	74625000	13619000	0	0	0	0	0	0	0	0	0	58543	1604	55161	356328	480995	480995			1	
YEESLADSDNK	1	Unmodified	1269.5361	0.53609053	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									2	2	1	1	17.17	16.688	2	0.00014102	14260	160511_QHF_FH_JSI12i_1	83.883	79.584			0.53115	0.48293	60.059	4	3	Median	0.59032	0.50266	NaN	1	1	Median	0.33498	0.37822	NaN	1	1	Median	0.47792	0.46397	NaN	1	1	Median	1.3968	1.4444	NaN	1	0	Median	119290000	73218000	46073000	28769000	18982000	9786800	32307000	24850000	7456400	16581000	12296000	4285300	41634000	17090000	24544000	58544	3063	55162	356329;356330;356331;356332;356333;356334	480996;480997;480998;480999;481000;481001;481002	480997			7	
YEETVFYGLQYILNK	1	Unmodified	1878.9404	0.94036644	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	2	3	94.818	86.515	2;3	6.0461E-54	46607	160513_QHF_FH_JSI12Kac_6	188.06	158.72			0.9704	1.0069	17.539	7	3	Median	0.9704	0.83051	NaN	1	0	Median	1.0292	1.2171	24.128	2	2	Median	1.1216	1.0549	6.5861	2	1	Median	0.88586	0.93985	4.5665	2	0	Median	471070000	258390000	212680000	88924000	48998000	39927000	153780000	86360000	67417000	79295000	43469000	35826000	149080000	79564000	69513000	58545	1566	55163	356335;356336;356337;356338;356339;356340;356341;356342	481003;481004;481005;481006;481007;481008;481009;481010;481011;481012	481010			10	
YEEVARK	1	Unmodified	893.46068	0.46068117	73;2069;886;858;929	P06753;CON__Q3SX28;P07951;P09493;P67936	TPM3;TPM2;TPM1;TPM4	Tropomyosin alpha-3 chain;Tropomyosin beta chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.29	4.6		7	5					1	1	2	2	5	5	5.7615	3.998	2;3	0.00097184	3260	160511_QHF_FH_JSI12i_2	95.62	25.353		+	1.0964	1.0268	32.888	12	2	Median	1.1889	1.0011	7.9479	2	0	Median	0.80047	0.99549	NaN	1	0	Median	1.0626	1.0503	34.291	4	1	Median	1.0518	1.1616	45.301	5	1	Median	5785700000	2492000000	3293800000	1017700000	409750000	607930000	398530000	177440000	221090000	1320000000	666370000	653620000	3049500000	1238400000	1811100000	58546	858;73;886;929;2069	55164	356343;356344;356345;356346;356347;356348;356349;356350;356351;356352;356353;356354;356355;356356	481013;481014;481015;481016;481017;481018;481019;481020;481021;481022;481023;481024;481025;481026;481027;481028;481029;481030;481031;481032;481033	481019			20	
YEEVSVSGFEEFHR	0	Unmodified	1713.7635	0.76346471	4367	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.36		9	4						3	4	4	3	5	60.671	58.248	2;3	1.0897E-30	50098	160511_QHF_FH_JSI12i_2	154.86	152.66			1.0479	1.0107	13.61	16	2	Median	1.1909	1.0107	10.38	4	0	Median	0.74989	0.895	6.9558	4	0	Median	1.1541	1.1486	12.485	3	0	Median	1.0286	1.1449	14.635	5	2	Median	1516700000	769200000	747460000	247730000	116350000	131380000	356690000	208850000	147840000	561040000	262460000	298580000	351200000	181540000	169660000	58547	4367	55165	356357;356358;356359;356360;356361;356362;356363;356364;356365;356366;356367;356368;356369;356370;356371;356372	481034;481035;481036;481037;481038;481039;481040;481041;481042;481043;481044;481045;481046;481047;481048;481049;481050;481051;481052;481053;481054;481055;481056;481057;481058;481059	481036			25	
YEEYDNAIITMMNHPTDAWK	1	Unmodified	2441.0668	0.066782296	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	1	2	91.261	90.717	3	1.7836E-10	79767	160511_QHF_FH_JSI9i_2	119.62	111.02			0.9211	0.99713	9.2754	7	5	Median	1.1479	0.96565	9.2642	2	2	Median	0.82223	0.99567	0.20714	2	2	Median	1.0205	1.0196	NaN	1	0	Median	0.81965	0.9164	18.095	2	1	Median	793210000	420780000	372430000	146300000	68047000	78250000	199410000	119430000	79977000	215560000	117790000	97774000	231940000	115520000	116430000	58548	2155	55166	356373;356374;356375;356376;356377;356378;356379	481060;481061;481062;481063;481064;481065;481066;481067	481063			8	
YEGFFGLYR	0	Unmodified	1150.5447	0.54474515	5345;562	Q9UJS0;O75746	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	3	2	2	3	75.477	73.01	2	2.4965E-06	64069	160511_QHF_FH_JSI12i_3	126.28	98.104			0.96249	0.97867	11.484	10	0	Median	1.2047	1.0403	9.7103	3	0	Median	0.79209	0.93299	15.059	2	0	Median	0.96533	0.94614	9.4582	2	0	Median	1.0484	1.0781	14.427	3	0	Plateau	1208300000	596240000	612070000	252150000	111400000	140750000	168570000	96958000	71607000	385560000	168970000	216590000	402040000	218910000	183130000	58549	5345;562	55167	356380;356381;356382;356383;356384;356385;356386;356387;356388;356389	481068;481069;481070;481071;481072;481073;481074;481075;481076;481077;481078;481079	481078			12	
YEGFFSLWK	1	Unmodified	1175.5651	0.56514624	2198	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.71	5.87			5						2	1	2	2	2	91.958	88.502	2	4.2032E-06	81033	160511_QHF_FH_JSI12i_3	120.15	91.006			0.8755	0.90574	12.404	6	0	Median	1.0024	0.8312	NaN	1	0	Median	0.77593	0.93999	NaN	1	0	Median	1.0163	0.97553	23.656	2	0	Median	0.87264	0.90683	5.4193	2	0	Median	797280000	409110000	388180000	74922000	34528000	40393000	79344000	43087000	36257000	282040000	144050000	137980000	360980000	187440000	173540000	58550	2198	55168	356390;356391;356392;356393;356394;356395;356396	481080;481081;481082;481083;481084;481085;481086;481087;481088;481089;481090;481091;481092;481093;481094;481095;481096;481097;481098;481099	481096			20	
YEGGYPALTEVMNK	1	Unmodified	1570.7337	0.73374448	500	O75323	GBAS	Protein NipSnap homolog 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		69.001	68.193	2	1.383E-07	59536	160511_QHF_FH_JSI11i_2	97.163	79.299			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10815000	10815000	0	0	0	0	10815000	10815000	0	0	0	0	0	0	0	58551	500	55169	356397;356398	481100;481101	481100			2	
YEGILYTIDTDNSTVALAK	1	Unmodified	2086.047	0.047016357	4508	Q9BX40	LSM14B	Protein LSM14 homolog B	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	86.615	85.615	2	2.8221E-05	75416	160511_QHF_FH_JSI11i_2	82.34	60.467			0.90523	0.96449	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90523	0.96449	NaN	1	1	Median	7648800	5530800	2117900	0	0	0	0	0	0	0	0	0	7648800	5530800	2117900	58552	4508	55170	356399;356400	481102;481103	481103			2	
YEGILYTIDTENSTVALAK	1	Unmodified	2100.0627	0.062666421	3625	Q8ND56	LSM14A	Protein LSM14 homolog A	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		87.178	86.607	2	0.00010521	76129	160511_QHF_FH_JSI11i_2	89.013	73.982			0.89628	0.87949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89628	0.87949	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	13154000	5510700	7643100	0	0	0	0	0	0	13154000	5510700	7643100	0	0	0	58553	3625	55171	356401	481104	481104			1	
YEGSGEDGGAAAQSLYIANHAY	0	Unmodified	2242.9767	0.97670496	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	4									1	2		1	63.263	62.649	2	6.1949E-121	57050	160511_QHF_FH_JSI12i_1	277.94	255.71			0.93674	1.0629	14.355	4	2	Median	1.4447	1.2019	NaN	1	0	Median	0.91426	1.0629	15.415	2	2	Median	NaN	NaN	NaN	0	0	Median	0.86496	0.91282	NaN	1	0	Median	137410000	70933000	66473000	22597000	9905000	12692000	77061000	40794000	36266000	0	0	0	37749000	20234000	17515000	58554	944	55172	356402;356403;356404;356405	481105;481106;481107;481108;481109;481110	481106			6	
YEHALSQCSVDVYKK	2	Unmodified	1825.8669	0.86688392	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	30.707	30.643	3	0.0018818	25858	160511_QHF_FH_JSI12i_3	58.814	47.87			4.4148	4.582	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.4148	4.582	NaN	1	1	Median	14575000	2563900	12011000	0	0	0	0	0	0	0	0	0	14575000	2563900	12011000	58555	2516	55173	356406	481111	481111			1	
YEHDDIVSTVSVLSSGTQAVSGSK	1	Unmodified	2465.1922	0.19217704	4355	Q9BQA1	WDR77	Methylosome protein 50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							2	1	1	3	75.628	74.882	3	3.5225E-24	66540	160511_QHF_FH_JSI10i_2	146.19	138.09			0.99776	0.98395	21.444	6	2	Median	1.382	1.1784	43.077	2	1	Median	0.81626	1.022	NaN	1	0	Median	0.97953	0.97701	NaN	1	0	Median	0.95444	0.97407	2.4289	2	1	Median	426840000	210510000	216330000	121320000	53446000	67873000	107270000	48129000	59136000	86886000	43161000	43724000	111370000	65776000	45594000	58556	4355	55174	356407;356408;356409;356410;356411;356412;356413	481112;481113;481114;481115;481116;481117;481118;481119;481120;481121;481122;481123;481124;481125	481121			14	
YEHVLGALLSVGGK	1	Unmodified	1441.7929	0.79291434	135	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		69.368	69.368	3	0.051749	61826	160511_QHF_FH_JSI11i_3	26.292	21.401			4.5143	4.2101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.5143	4.2101	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12744000	2348000	10396000	0	0	0	0	0	0	12744000	2348000	10396000	0	0	0	58557	135	55175	356414	481126	481126			1	
YEIEETETVTK	1	Unmodified	1340.6347	0.63474195	2233	Q05682	CALD1	Caldesmon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									2	1	1	1	37.523	36.789	2	1.6049E-05	32969	160511_QHF_FH_JSI11i_1	120.09	107.13			0.88518	0.89552	44.126	5	2	Median	1.063	0.86777	87.603	2	2	Median	0.66736	0.79284	NaN	1	0	Median	0.92428	0.91041	NaN	1	0	Median	0.88518	0.89552	NaN	1	0	Median	819660000	430110000	389560000	256470000	132110000	124360000	177320000	103670000	73648000	203470000	107460000	96013000	182410000	86866000	95540000	58558	2233	55176	356415;356416;356417;356418;356419	481127;481128;481129;481130;481131;481132;481133;481134	481127			8	
YEILQSVDDAAIVIK	1	Unmodified	1675.9033	0.90325265	2325	Q12906	ILF3	Interleukin enhancer-binding factor 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	1	2	2	92.792	92.364	2	9.5808E-10	84083	160511_QHF_FH_JSI12i_1	146.36	127.22			0.9373	0.97049	17.135	7	1	Median	1.1076	0.92845	6.2638	2	1	Median	0.86901	0.98484	NaN	1	0	Median	1.0146	0.99722	8.3107	2	0	Median	0.74249	0.79659	32.601	2	0	Median	170980000	84522000	86460000	29774000	11870000	17903000	34619000	18266000	16353000	54681000	26182000	28499000	51908000	28203000	23705000	58559	2325	55177	356420;356421;356422;356423;356424;356425;356426	481135;481136;481137;481138;481139;481140;481141;481142;481143;481144;481145;481146;481147;481148;481149;481150	481140			16	
YEILTPNSIPK	1	Unmodified	1273.6918	0.69180331	1436	P35579	MYH9	Myosin-9	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.656	6	4	1							4	2	2	3	61.805	60.925	2	5.4347E-06	55553	160511_QHF_FH_JSI12i_1	106.2	91.048			0.80244	0.82253	32.936	10	5	Median	0.6216	0.51912	33.033	4	3	Median	0.65333	0.78597	27.042	2	0	Median	0.83267	0.83147	4.5156	2	0	Median	0.93544	1.0093	9.5532	2	2	Median	1455000000	840440000	614520000	446600000	268340000	178260000	327600000	204000000	123600000	414900000	228240000	186650000	265860000	139860000	126000000	58560	1436	55178	356427;356428;356429;356430;356431;356432;356433;356434;356435;356436;356437	481151;481152;481153;481154;481155;481156;481157;481158;481159;481160;481161;481162;481163;481164;481165;481166	481155			16	
YEIMDGAPVK	1	Unmodified	1121.5427	0.54269624	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	4.55	6						1			1	2	1	3	49.379	46.713	2	2.2811E-07	41590	160511_QHF_FH_JSI9i_1	115.71	109.93			1.1764	1.2316	12.172	5	2	Median	1.475	1.2223	NaN	1	0	Median	0.84744	1.0061	NaN	1	1	Median	1.4514	1.4042	NaN	1	0	Median	1.1626	1.2552	2.6767	2	1	Median	1757200000	880080000	877150000	363450000	184550000	178900000	461510000	233590000	227920000	520940000	249050000	271890000	411340000	212890000	198450000	58561	525	55179	356438;356439;356440;356441;356442;356443;356444	481167;481168;481169;481170;481171;481172;481173;481174;481175;481176;481177	481175			11	
YEISSVPTFLFFK	1	Unmodified	1576.8177	0.81773211	595	O76003	GLRX3	Glutaredoxin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.76		4	4						8	4	4	4	4	97.99	93.15	2;3	6.3744E-53	90923	160511_QHF_FH_JSI11i_3	190.86	152.86			0.96256	0.99951	15.778	14	0	Median	1.1599	0.97158	13.293	4	0	Linear	0.73999	0.89241	15.374	3	0	Median	0.97603	0.99291	15.233	3	0	Median	0.90475	0.9702	19.46	4	0	Median	7714900000	4095100000	3619800000	1580200000	731040000	849200000	1794600000	1065100000	729460000	1948000000	1022700000	925350000	2392000000	1276200000	1115800000	58562	595	55180	356445;356446;356447;356448;356449;356450;356451;356452;356453;356454;356455;356456;356457;356458;356459;356460	481178;481179;481180;481181;481182;481183;481184;481185;481186;481187;481188;481189;481190;481191;481192;481193;481194;481195;481196;481197;481198;481199;481200;481201;481202;481203;481204	481178			27	
YEITEQR	0	Unmodified	937.45051	0.45051041	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	17.898	17.209	2	0.00485	14585	160511_QHF_FH_JSI10i_2	97.033	61.832			0.93358	1.0069	19.078	6	0	Median	1.6051	1.3512	7.869	2	0	Median	0.82245	1.0066	NaN	1	0	Median	0.90838	0.90107	2.1154	2	0	Median	0.9207	1.0073	NaN	1	0	Median	1682100000	825190000	856870000	669440000	261130000	408310000	128900000	63369000	65534000	697720000	404250000	293470000	186000000	96438000	89557000	58563	2196	55181	356461;356462;356463;356464;356465;356466	481205;481206;481207;481208;481209;481210;481211	481211			7	
YEITEQRK	1	Unmodified	1065.5455	0.54547343	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.12		10	5					4	3	5	4	7	6	13.799	10.503	2;3	0.00011375	8931	160511_QHF_FH_JSI11i_3	140.09	93.664			0.86122	0.86123	21.48	20	6	Median	1.1181	0.94162	16.836	4	1	Median	0.89739	1.0675	18.931	4	1	Median	0.85831	0.8459	12.508	6	2	Median	0.63472	0.70441	18.624	6	2	Median	7263200000	3916100000	3347100000	688640000	354970000	333660000	1032800000	543310000	489460000	3193800000	1600900000	1592900000	2348000000	1416900000	931030000	58564	2196	55182	356467;356468;356469;356470;356471;356472;356473;356474;356475;356476;356477;356478;356479;356480;356481;356482;356483;356484;356485;356486;356487;356488	481212;481213;481214;481215;481216;481217;481218;481219;481220;481221;481222;481223;481224;481225;481226;481227;481228;481229;481230;481231;481232;481233;481234;481235;481236;481237;481238;481239	481212			28	
YEITFTLPPVHR	0	Unmodified	1471.7823	0.78234966	4597	Q9GZN8	C20orf27	UPF0687 protein C20orf27	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	75.304	75.115	3	2.7659E-05	66944	160511_QHF_FH_JSI11i_3	67.08	61.864			1.1557	1.0902	5.895	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.191	1.0902	NaN	1	0	Median	0.98776	1.0303	6.9433	2	0	Median	94115000	40178000	53937000	0	0	0	0	0	0	39069000	19063000	20005000	55047000	21115000	33932000	58565	4597	55183	356489;356490;356491	481240;481241;481242	481241			3	
YEIVGNLGEGTFGK	1	Unmodified	1482.7355	0.73545904	1680	P49761	CLK3	Dual specificity protein kinase CLK3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	68.983	67.684	2	0.0011243	59261	160511_QHF_FH_JSI11i_2	62.694	44.469			1.0742	1.1738	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0742	1.1738	NaN	1	1	Median	19056000	7054400	12001000	0	0	0	0	0	0	0	0	0	19056000	7054400	12001000	58566	1680	55184	356492;356493	481243;481244	481244			2	
YEKDIAAYR	1	Acetyl (K)	1169.5717	0.57168818	928;1280	P09429;P26583	HMGB1;HMGB2	High mobility group protein B1;High mobility group protein B2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.1	0.781						2	3	3			3	3	2	47.801	37.741	2	4.8583E-07	21229	160513_QHF_FH_JSI10Kac_4	138.66	102.78			0.72037	0.79027	39.299	8	0	Median	NaN	NaN	NaN	0	0	Median	0.91945	1.1042	4.2477	3	0	Plateau	0.47142	0.45885	17.884	3	0	Median	0.72037	0.79027	0.46595	2	0	Median	216540000	138350000	78197000	0	0	0	46038000	23361000	22677000	127320000	89534000	37789000	43182000	25450000	17732000	58567	928;1280	55185	356494;356495;356496;356497;356498;356499;356500;356501	481245;481246;481247;481248;481249;481250	481245	679		6	
YEKSLYSMIK	2	Acetyl (K);Oxidation (M)	1318.6479	0.64788959	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		57.568	46.702	2	0.038219	25656	160513_QHF_FH_JSI11Kac_5	50.194	33.523			0.015835	0.015737	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.015835	0.015737	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3017700	2998200	19561	0	0	0	0	0	0	3017700	2998200	19561	0	0	0	58568	891	55186	356502	481251	481251	631		1	
YEKSLYSMIK	2	Acetyl (K)	1302.653	0.65297497	891	P08133	ANXA6	Annexin A6	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		74.92	64.33	2	0.00049943	34294	160513_QHF_FH_JSI11Kac_5	91.658	68.878			0.085326	0.091369	77.331	2	2	Median	NaN	NaN	NaN	0	0	Median	0.13614	0.15786	NaN	1	1	Median	0.05348	0.052884	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	12199000	11465000	733220	0	0	0	3033900	2634400	399500	9164700	8831000	333720	0	0	0	58569	891	55186	356503;356504	481252;481253	481252	631		2	
YELGRPAANTK	1	Unmodified	1218.6357	0.63568542	1985	P62241	RPS8	40S ribosomal protein S8	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.43	5.75		2	8					2	2	5	4	3	2	20.158	17.622	2;3	4.5234E-05	14210	160511_QHF_FH_JSI9i_3	110.14	84.576			0.95447	0.90228	16.081	13	0	Median	1.0765	0.90228	13.664	5	0	Median	0.72009	0.80443	16.108	3	0	Plateau	1.0197	0.96147	4.898	3	0	Median	0.65424	0.66405	2.9814	2	0	Median	10827000000	5159700000	5667000000	3659200000	1755800000	1903500000	4089600000	1824700000	2264900000	2609500000	1320300000	1289200000	468280000	258820000	209460000	58570	1985	55187	356505;356506;356507;356508;356509;356510;356511;356512;356513;356514;356515;356516;356517;356518	481254;481255;481256;481257;481258;481259;481260;481261;481262;481263;481264;481265;481266;481267;481268;481269	481263			16	
YELHLKSFEK	2	Acetyl (K)	1334.6871	0.68705229	2193	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	16	0									4		1	2	1	67.446	58.183	2;3	0.00015509	31526	160513_QHF_FH_JSI11Kac_6	96.113	74.65			0.30676	0.29381	153.66	3	1	Median	NaN	NaN	NaN	0	0	Median	1.0164	1.1737	NaN	1	0	Median	0.30676	0.29381	NaN	1	0	Median	0.050425	0.054573	NaN	1	1	Median	401230000	284050000	117180000	0	0	0	53159000	26172000	26987000	336480000	246620000	89865000	11583000	11259000	323640	58571	2193	55188	356519;356520;356521;356522	481270;481271;481272;481273	481272	2313		4	
YELISETGGSHDK	1	Unmodified	1434.6627	0.66268803	2325;4243	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.39	5.99	1	8	3				1	5		4	4	6	4	29.997	26.013	2;3	6.1399E-06	21769	160511_QHF_FH_JSI12i_2	118.76	87.535			1.0336	1.0308	26.906	17	1	Median	1.2866	1.0939	15.61	4	0	Median	1.0986	1.3643	30.918	4	1	Median	0.99428	0.96186	4.0743	5	0	Median	0.7807	0.87222	26.773	4	0	Median	2727100000	1266600000	1460600000	401250000	186840000	214420000	501280000	199130000	302150000	1294500000	509810000	784640000	530130000	370790000	159340000	58572	2325;4243	55189	356523;356524;356525;356526;356527;356528;356529;356530;356531;356532;356533;356534;356535;356536;356537;356538;356539;356540	481274;481275;481276;481277;481278;481279;481280;481281;481282;481283;481284;481285;481286;481287;481288;481289;481290;481291;481292;481293;481294;481295;481296;481297;481298;481299;481300	481276			27	
YELISETGGSHDKR	1	Acetyl (K)	1632.7744	0.77436375	2325;4243	Q12906;Q96SI9	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	no	no	1	0	0	1			By MS/MS		15	0								1				1		41.399	31.245	3	0.0012075	17967	160513_QHF_FH_JSI11Kac_5	69.258	59.47			0.045962	0.045142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.045962	0.045142	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5172600	4993400	179200	0	0	0	0	0	0	5172600	4993400	179200	0	0	0	58573	2325;4243	55190	356541	481301	481301	2419		1	
YELLQEPGGGGSGGESR	0	Unmodified	1691.7751	0.77509203	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.321	41.854	2	7.1896E-06	37753	160511_QHF_FH_JSI11i_1	109.22	95.063			1.6386	1.7873	15.877	3	3	Median	NaN	NaN	NaN	0	0	Median	1.6386	1.8384	NaN	1	1	Median	1.8623	1.7873	NaN	1	1	Median	1.3524	1.3784	NaN	1	1	Median	83088000	28864000	54224000	0	0	0	18296000	6829800	11466000	32194000	9675000	22519000	32599000	12359000	20239000	58574	401	55191	356542;356543;356544	481302;481303;481304	481302			3	
YELPLVIQALTNIEDK	1	Unmodified	1858.0088	0.0087803574	4207	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	102.5	102.49	2;3	9.5414E-10	91611	160511_QHF_FH_JSI11i_3	184.21	155.4			0.98551	0.99473	24.706	5	2	Median	0.77117	0.64897	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1966	1.1286	2.3223	2	1	Median	0.86704	0.87408	18.285	2	1	Median	368350000	181790000	186560000	49879000	30378000	19501000	0	0	0	98013000	44314000	53699000	220460000	107100000	113360000	58575	4207	55192	356545;356546;356547;356548;356549	481305;481306;481307;481308;481309;481310;481311	481307			7	
YELQLANPK	1	Unmodified	1074.571	0.5709599	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.94	4	3	1				1			2	2	2	3	46.626	44.65	2	7.425E-05	38363	160511_QHF_FH_JSI11i_2	114.5	106.67			0.90314	0.88788	42.943	9	4	Median	1.326	1.1188	30.842	2	1	Median	0.4872	0.57641	50.201	2	1	Median	0.96997	0.95877	10.864	2	1	Median	0.73422	0.76275	56.213	3	1	Median	930860000	398860000	532000000	174920000	70035000	104890000	125900000	67342000	58559000	332240000	157360000	174880000	297800000	104120000	193680000	58576	3101	55193	356550;356551;356552;356553;356554;356555;356556;356557;356558	481312;481313;481314;481315;481316;481317;481318;481319;481320	481319			9	
YEMFAQTLQQSR	0	Unmodified	1500.7031	0.70311306	1846	P55072	VCP	Transitional endoplasmic reticulum ATPase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	6.04	1	5	3					3	1	4	4	3	2	57.905	54.035	2	8.8184E-16	47494	160511_QHF_FH_JSI9i_2	157.68	129.67			1.3827	1.3577	32.991	12	7	Median	1.2316	1.0507	28.064	4	3	Median	1.6164	1.9783	33.469	3	2	Median	1.0734	1.0483	31.088	3	1	Plateau	1.263	1.353	25.777	2	1	Median	1370600000	597600000	773030000	183190000	69864000	113330000	440000000	175090000	264910000	421940000	184490000	237450000	325480000	168150000	157330000	58577	1846	55194	356559;356560;356561;356562;356563;356564;356565;356566;356567;356568;356569;356570;356571	481321;481322;481323;481324;481325;481326;481327;481328;481329;481330;481331;481332;481333;481334;481335;481336;481337	481329			17	
YENDPELEK	1	Unmodified	1135.5033	0.50333384	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				19.79	18.66	2	0.0065635	15691	160511_QHF_FH_JSI9i_1	54.416	36.431			7.5298	6.1866	NaN	1	0	Median	7.5298	6.1866	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67479000	14853000	52627000	67479000	14853000	52627000	0	0	0	0	0	0	0	0	0	58578	4461	55195	356572	481338	481338			1	
YENGAFQER	0	Unmodified	1112.4887	0.48868683	1241	P23919	DTYMK	Thymidylate kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	1	2	18.003	17.326	2	3.081E-05	14138	160511_QHF_FH_JSI11i_2	102.07	102.07			1.1361	0.96813	25.944	5	0	Median	1.1464	0.96813	NaN	1	0	Median	0.78413	0.96219	NaN	1	0	Median	1.1361	1.1468	NaN	1	0	Median	1.0053	1.0905	49.434	2	0	Median	333480000	154230000	179250000	50493000	16235000	34258000	45532000	26663000	18869000	113550000	53506000	60044000	123900000	57827000	66077000	58579	1241	55196	356573;356574;356575;356576;356577	481339;481340;481341;481342;481343;481344	481343			6	
YENNVMNIR	0	Unmodified	1151.5393	0.53934219	2264	Q08209;P16298	PPP3CA;PPP3CB	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	35.789	34.639	2	0.00025079	30379	160511_QHF_FH_JSI10i_2	111.17	95.786			1.0745	1.2659	7.4123	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0761	1.3341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0729	1.2013	NaN	1	1	Median	139830000	68548000	71286000	0	0	0	69663000	33865000	35799000	0	0	0	70171000	34683000	35487000	58580	2264	55197	356578;356579;356580	481345;481346;481347	481347			3	
YEPAAVSEQGDK	1	Unmodified	1292.5885	0.58846046	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.66	4					2				1	1	3	1	22.441	20.452	2	2.6939E-05	17531	160511_QHF_FH_JSI11i_1	114.83	102.99			0.73391	0.74128	13.931	5	5	Linear	0.72482	0.58471	NaN	1	1	Median	0.6611	0.77297	NaN	1	1	Median	0.69471	0.67381	17.664	2	2	Median	0.71253	0.74128	NaN	1	1	Median	667390000	395150000	272240000	179530000	106060000	73475000	147650000	88753000	58895000	172880000	93459000	79418000	167330000	106880000	60451000	58581	821	55198	356581;356582;356583;356584;356585;356586	481348;481349;481350;481351;481352;481353	481348			6	
YEPAAVSEQGDKK	2	Unmodified	1420.6834	0.68342347	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	2.66	3	9	7				1			3	4	6	7	16.219	15.456	2;3	4.3691E-11	12240	160511_QHF_FH_JSI12i_3	125.53	117.01			1.0585	1.1199	21.967	20	9	Median	1.3721	1.162	13.798	3	1	Median	0.93163	1.098	26.309	4	2	Median	1.1035	1.0523	23.811	6	3	Median	1.0358	1.1055	22.637	7	3	Median	1961000000	927360000	1033600000	307890000	140150000	167740000	338520000	178160000	160350000	592890000	268420000	324470000	721690000	340640000	381050000	58582	821	55199	356587;356588;356589;356590;356591;356592;356593;356594;356595;356596;356597;356598;356599;356600;356601;356602;356603;356604;356605;356606	481354;481355;481356;481357;481358;481359;481360;481361;481362;481363;481364;481365;481366;481367;481368;481369;481370;481371;481372;481373;481374;481375;481376;481377;481378;481379;481380;481381	481379			28	
YEPGYNSSHPTIVMFWK	1	Oxidation (M)	2070.9509	0.9509479	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	76.124	67.692	3	0.00039124	35385	160513_QHF_FH_JSI12Kac_6	62.94	36.211			0.88562	0.83537	27.507	4	1	Median	1.0321	0.87598	NaN	1	0	Median	0.4729	0.56075	NaN	1	1	Median	1.1324	1.0849	NaN	1	0	Median	0.7599	0.79664	NaN	1	0	Median	138000000	73606000	64392000	43449000	19163000	24287000	25186000	16417000	8768900	18553000	10267000	8286300	50810000	27760000	23050000	58583	5332	55200	356607;356608;356609;356610	481382;481383;481384;481385;481386;481387	481386		2631	6	
YEPGYNSSHPTIVMFWK	1	Unmodified	2054.956	0.95603328	5332	Q9UII4	HERC5	E3 ISG15--protein ligase HERC5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	79.9	71.615	3	4.4332E-24	39026	160513_QHF_FH_JSI11Kac_6	151.62	115.43			0.88938	0.90008	11.109	4	0	Median	0.90419	0.78689	NaN	1	0	Median	0.73065	0.86196	NaN	1	0	Median	1.0827	1.0184	NaN	1	0	Median	0.87482	0.93989	NaN	1	0	Median	1125600000	576980000	548580000	266970000	135220000	131750000	354880000	194960000	159920000	351300000	169260000	182040000	152400000	77530000	74869000	58584	5332	55200	356611;356612;356613;356614	481388;481389;481390;481391;481392;481393;481394;481395	481389			8	
YEPPHIK	1	Unmodified	882.45995	0.45995289	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		18.484	18.484	3	0.019327	15485	160511_QHF_FH_JSI11i_3	34.808	16.077			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58585	2560	55201	356615	481396	481396			1	
YEPPHIKK	2	Unmodified	1010.5549	0.5549159	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	13.684	13.102	3	0.0046302	10430	160511_QHF_FH_JSI9i_3	53.166	42.293			0.80733	0.64873	26.52	3	0	Plateau	0.63029	0.51604	NaN	1	0	Median	0.44877	0.51431	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80733	0.81553	NaN	1	0	Median	447070000	207520000	239550000	141050000	62516000	78536000	74067000	46046000	28021000	0	0	0	231950000	98957000	133000000	58586	2560	55202	356616;356617;356618	481397	481397			1	
YEPVAEIGVGAYGTVYK	1	Unmodified	1814.9091	0.90906631	1007	P11802	CDK4	Cyclin-dependent kinase 4	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		73.784	73.154	2	0.0074449	64011	160511_QHF_FH_JSI11i_2	55.105	8.2253			2.5327	2.5412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.5327	2.5412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	201670000	47736000	153940000	0	0	0	0	0	0	201670000	47736000	153940000	0	0	0	58587	1007	55203	356619	481398	481398			1	
YEQGTGCWQGPNR	0	Unmodified	1551.6525	0.65247447	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.629	1	5	3							1	3	2	3	26.883	26.339	2	5.1538E-31	22362	160511_QHF_FH_JSI11i_3	193.96	190.04			0.92588	0.87972	37.571	8	4	Median	0.88377	0.7612	NaN	1	1	Median	0.95022	1.1568	57.201	2	2	Median	0.87247	0.83767	7.8424	2	0	Median	1.0147	1.1447	41.121	3	1	Median	409690000	198790000	210900000	19861000	10985000	8876300	94689000	52749000	41940000	162510000	72810000	89697000	132630000	62250000	70384000	58588	1050	55204	356620;356621;356622;356623;356624;356625;356626;356627;356628	481399;481400;481401;481402;481403;481404;481405;481406;481407;481408;481409;481410;481411;481412;481413;481414	481400			16	
YESAAVILHSPLTSGMR	0	Unmodified	1830.9298	0.92981853	2981	Q5VST6	ABHD17B	Alpha/beta hydrolase domain-containing protein 17B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	67.931	67.634	3	0.01394	58580	160511_QHF_FH_JSI12i_3	39.523	28.468			0.8747	0.87548	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.8747	0.87548	NaN	1	1	Median	90253000	45248000	45005000	0	0	0	0	0	0	0	0	0	90253000	45248000	45005000	58589	2981	55205	356629	481415	481415			1	
YESGDHVAVYPANDSALVNQLGK	1	Unmodified	2446.1765	0.1764674	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	66.05	65.321	3	4.3956E-17	57006	160511_QHF_FH_JSI11i_2	133.26	126.31			0.81663	0.80433	20.266	6	2	Median	1.029	0.88298	NaN	1	0	Median	0.5845	0.68341	0.98793	2	0	Median	0.81663	0.80433	2.6064	2	1	Median	1.0699	1.1795	NaN	1	1	Median	341560000	187800000	153760000	55751000	24117000	31634000	82242000	49284000	32958000	144110000	82685000	61428000	59451000	31710000	27741000	58590	1100	55206	356630;356631;356632;356633;356634;356635	481416;481417;481418;481419;481420;481421;481422	481420			7	
YESLTDPSK	1	Unmodified	1038.487	0.4869555	898;880;2870;2869	P08238;Q58FF7;P07900;Q58FF8;Q58FF6	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB2P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 2;Putative heat shock protein HSP 90-beta 4	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.07	4	2				2				1	3	3	1	22.516	19.879	2	3.5372E-08	16920	160511_QHF_FH_JSI9i_1	147.51	137.09			0.73536	0.76746	23.796	7	1	Median	0.91079	0.74777	NaN	1	0	Median	0.46649	0.55192	25.581	3	1	Plateau	0.65509	0.63895	30.617	2	0	Median	0.90945	0.96728	NaN	1	0	Median	3843000000	2224400000	1618500000	817560000	441080000	376480000	928310000	621710000	306590000	1142200000	667220000	475010000	954860000	494420000	460440000	58591	898;880;2870;2869	55207	356636;356637;356638;356639;356640;356641;356642;356643	481423;481424;481425;481426;481427;481428;481429;481430	481428			8	
YESSALPSGQLTSLSEYASR	0	Unmodified	2145.0226	0.022592521	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.598	9	8	1							5	4	5	4	74.539	73.903	2;3	1.4951E-67	67317	160511_QHF_FH_JSI11i_1	281.07	268.06			1.0181	1.0152	10.181	17	0	Median	1.2766	1.0721	4.976	4	0	Median	0.80977	0.96773	2.6948	4	0	Median	1.0181	1.0152	4.1023	5	0	Median	0.99413	1.0961	20.768	4	0	Median	2761700000	1390200000	1371400000	476990000	202260000	274730000	680310000	381980000	298330000	1001700000	516880000	484870000	602610000	289090000	313520000	58592	2328	55208	356644;356645;356646;356647;356648;356649;356650;356651;356652;356653;356654;356655;356656;356657;356658;356659;356660;356661	481431;481432;481433;481434;481435;481436;481437;481438;481439;481440;481441;481442;481443;481444;481445;481446;481447;481448;481449;481450;481451;481452;481453;481454;481455;481456;481457;481458;481459;481460	481434			30	
YESSSYTDQFSR	0	Unmodified	1468.6107	0.61065246	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	33.167	32.781	2	0.00012115	29564	160511_QHF_FH_JSI12i_1	85.958	81.804			0.83761	0.97339	4.4548	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.82304	0.95204	NaN	1	0	Median	1.0183	0.97339	NaN	1	1	Median	1.0145	1.0374	NaN	1	0	Median	105190000	51923000	53264000	0	0	0	38979000	20213000	18766000	40066000	20786000	19280000	26142000	10924000	15218000	58593	2253	55209	356662;356663;356664	481461;481462;481463;481464	481462			4	
YESSTASALVA	0	Unmodified	1097.5241	0.52406928	1995	P62277	RPS13	40S ribosomal protein S13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	5.21	4			4	3	2			1	2	5	4	3	44.33	37.749	2	2.7538E-09	17166	160513_QHF_FH_JSI11Kac_2	124.08	121.39			1.0087	1.0572	9.9671	12	0	Median	1.5748	1.3021	NaN	1	0	Median	0.90361	1.0572	5.4333	4	0	Median	1.103	1.0685	4.898	4	0	Median	0.98538	1.0513	15.977	3	0	Median	3169700000	1497200000	1672500000	546620000	192560000	354060000	906190000	486790000	419390000	969170000	446560000	522600000	747740000	371330000	376410000	58594	1995	55210	356665;356666;356667;356668;356669;356670;356671;356672;356673;356674;356675;356676;356677;356678	481465;481466;481467;481468;481469;481470;481471;481472;481473;481474;481475;481476;481477;481478;481479;481480;481481;481482;481483;481484;481485	481465			21	
YESVLQLGR	0	Unmodified	1063.5662	0.56620887	1795	P53365	ARFIP2	Arfaptin-2	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	47.835	47.595	2	0.015813	40650	160511_QHF_FH_JSI12i_3	43.769	8.9615			0.80618	0.85215	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80618	0.85215	NaN	1	0	Median	58279000	36844000	21436000	0	0	0	0	0	0	0	0	0	58279000	36844000	21436000	58595	1795	55211	356679	481486	481486			1	
YESWEDDQVPK	1	Unmodified	1394.599	0.59902514	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	39.677	39.181	2	0.014049	35585	160511_QHF_FH_JSI12i_1	52.725	42.202			1.0613	1.1589	2.0058	2	2	Median	NaN	NaN	NaN	0	0	Median	0.97681	1.1426	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1532	1.1755	NaN	1	1	Median	72919000	36822000	36097000	0	0	0	40539000	23985000	16554000	0	0	0	32380000	12836000	19543000	58596	1718	55212	356680;356681	481487;481488	481487			2	
YETEINITK	1	Unmodified	1109.5605	0.56045479	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				38.846	37.63	2	0.01773	33291	160511_QHF_FH_JSI9i_1	52.278	30.192			0.67695	0.55464	NaN	1	1	Median	0.67695	0.55464	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	47548000	30101000	17447000	47548000	30101000	17447000	0	0	0	0	0	0	0	0	0	58597	1085	55213	356682	481489	481489			1	
YETELAMR	0	Unmodified	1011.4695	0.46953129	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.53	4.16	4	6	3				2			2	5	4	4	33.078	30.77	2	0.00017471	26623	160511_QHF_FH_JSI9i_2	122.74	102.46			1.0696	1.1149	34.426	12	3	Median	1.2136	0.99874	NaN	1	0	Median	1.0311	1.2245	21.139	5	2	Median	1.1298	1.1525	19.452	3	0	Median	1.3348	1.4455	66.852	3	1	Plateau	9472100000	4990500000	4481600000	1335400000	645090000	690270000	3269300000	1719700000	1549600000	3290300000	1767400000	1522900000	1577100000	858270000	718860000	58598	842	55214	356683;356684;356685;356686;356687;356688;356689;356690;356691;356692;356693;356694;356695;356696;356697	481490;481491;481492;481493;481494;481495;481496;481497;481498;481499;481500;481501;481502;481503;481504;481505;481506;481507	481502			18	
YETELAMR	0	Oxidation (M)	1027.4644	0.46444592	842	P05783	KRT18	Keratin, type I cytoskeletal 18	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	5.1	6	3					1	1		1	3	3	4	25.03	22.851	2	0.0034527	15456	160511_QHF_FH_JSI12i_2	81.191	68.759			0.91469	1.0164	56.976	11	0	Median	1.8249	1.4921	NaN	1	0	Median	0.9302	1.0953	21.528	3	0	Median	0.3219	0.32816	71.784	3	0	Median	0.86046	0.90883	21.483	4	0	Median	816860000	492150000	324710000	47773000	20934000	26839000	187600000	90838000	96760000	329050000	221360000	107690000	252440000	159030000	93414000	58599	842	55214	356698;356699;356700;356701;356702;356703;356704;356705;356706;356707;356708	481508;481509;481510;481511	481508		363	4	
YETFISDVLQR	0	Unmodified	1369.6878	0.68778057	5240	Q9UBK9	UXT	Protein UXT	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		78.447	77.772	2	0.0076582	69206	160511_QHF_FH_JSI10i_2	71.349	60.198			1.13	1.2781	0.055396	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0348	1.2776	NaN	1	1	Median	1.2341	1.2786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51847000	26513000	25334000	0	0	0	29023000	14835000	14188000	22825000	11678000	11147000	0	0	0	58600	5240	55215	356709;356710	481512;481513	481513			2	
YETGPGGTSR	0	Unmodified	1023.4621	0.46213773	3264	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		9.1826	1.5673	2	0.014862	3627	160513_QHF_FH_JSI11Kac_4	49.418	38.545			1.1098	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1098	1.0854	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	4528600	1975900	2552700	0	0	0	0	0	0	4528600	1975900	2552700	0	0	0	58601	3264	55216	356711	481514	481514			1	
YETGQLFLHSIFGYR	0	Unmodified	1829.9101	0.91006937	5534	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			3						6	2	3	2	2	87.002	80.059	2;3	2.3697E-31	44150	160513_QHF_FH_JSI10Kac_6	180.28	135.67			0.98389	0.90599	6.683	6	1	Median	1.0636	0.91141	1.64	2	1	Median	0.74898	0.89867	NaN	1	0	Median	0.95096	0.88768	3.6827	2	0	Median	0.99869	1.05	NaN	1	0	Median	1491900000	765870000	725980000	507200000	242520000	264680000	498760000	261680000	237090000	252650000	129620000	123030000	233240000	132050000	101180000	58602	5534	55217	356712;356713;356714;356715;356716;356717;356718;356719;356720	481515;481516;481517;481518;481519;481520;481521;481522;481523;481524;481525;481526	481526			12	
YETIHLTEEPTK	1	Unmodified	1459.7195	0.71947463	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		36.376	35.942	2;3	8.0312E-06	30640	160511_QHF_FH_JSI11i_2	97.813	78.027			0.42167	0.42693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42167	0.42693	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134040000	82412000	51628000	0	0	0	0	0	0	134040000	82412000	51628000	0	0	0	58603	4679	55218	356721;356722	481527;481528	481528			2	
YETLFQALDR	0	Unmodified	1254.6245	0.62445203	3071	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		72.966	72.966	2	0.023678	65094	160511_QHF_FH_JSI11i_3	48.698	36.071			1.8559	1.7086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8559	1.7086	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	20588000	7958100	12630000	0	0	0	0	0	0	20588000	7958100	12630000	0	0	0	58604	3071	55219	356723	481529	481529			1	
YETSGIGEAR	0	Unmodified	1081.504	0.50400254	1962	P61764	STXBP1	Syntaxin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	18.237	17.515	2	0.0050363	14298	160511_QHF_FH_JSI11i_2	64.04	29.232			0.82665	0.73553	20.983	3	2	Median	0.86084	0.73553	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59273	0.5883	NaN	1	1	Median	0.82665	0.8948	NaN	1	0	Median	75282000	47185000	28097000	23558000	14736000	8821800	0	0	0	26096000	16469000	9627300	25628000	15980000	9647500	58605	1962	55220	356724;356725;356726;356727;356728	481530;481531;481532;481533;481534;481535	481533			6	
YETSSTSAGDRYDSLLGR	0	Unmodified	1976.9076	0.90756276	227	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	45.893	45.172	3	0.0088803	37704	160511_QHF_FH_JSI10i_3	40.52	35.091			1.2704	1.2814	12.411	6	0	Median	1.5936	1.3539	NaN	1	0	Median	0.96968	1.1264	16.231	2	0	Median	1.2704	1.2362	7.0719	2	0	Median	1.4124	1.4264	NaN	1	0	Median	468760000	220410000	248350000	89892000	30466000	59427000	132640000	74366000	58272000	190760000	78370000	112390000	55465000	37207000	18257000	58606	227	55221	356729;356730;356731;356732;356733;356734	481536;481537;481538;481539	481537			4	
YEVFRTEEEEK	1	Unmodified	1457.6674	0.66743906	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							1	3	2	2	28.852	28.425	2;3	0.00032045	24375	160511_QHF_FH_JSI11i_3	57.175	44.906			0.87261	0.91459	43.21	7	1	Median	3.1561	2.7217	NaN	1	0	Median	0.7879	0.9539	15.499	2	1	Median	0.96268	0.92339	1.355	2	0	Median	0.80109	0.80996	5.2055	2	0	Median	748630000	403060000	345570000	79569000	27499000	52070000	151370000	81125000	70246000	264140000	143800000	120340000	253550000	150640000	102910000	58607	1076	55222	356735;356736;356737;356738;356739;356740;356741;356742	481540;481541;481542;481543;481544;481545;481546;481547;481548;481549	481540			10	
YEVTSGGGGTSR	0	Unmodified	1169.5313	0.53127993	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.2	4	1					3			1	2	2	3	13.1	9.6689	2	0.00010358	8538	160511_QHF_FH_JSI9i_1	89.171	70.396			0.93282	0.94358	9.7728	8	0	Median	1.1476	0.93133	NaN	1	0	Median	0.75311	0.89823	8.8135	2	0	Median	1.04	1.0227	13.429	2	0	Median	0.90955	0.97355	9.5953	3	0	Median	1147500000	619430000	528080000	181840000	84212000	97623000	341380000	218530000	122850000	317900000	153420000	164470000	306390000	163260000	143140000	58608	1085	55223	356743;356744;356745;356746;356747;356748;356749;356750	481550;481551;481552;481553;481554;481555;481556	481555			7	
YEWDVAEAR	0	Unmodified	1137.5091	0.50908792	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.91	3.58	4	4	2				1			3	3	2	3	46.032	44.185	2	3.0712E-16	39939	160511_QHF_FH_JSI11i_1	172.21	137.41			0.89554	0.95935	7.9422	11	0	Median	1.0826	0.87887	5.1179	3	0	Median	0.77798	0.93549	8.6226	3	0	Plateau	0.89758	0.89515	12.44	2	0	Median	0.89554	0.99589	3.2407	3	0	Median	8941100000	4544500000	4396600000	1541200000	702990000	838230000	2191700000	1232400000	959300000	3388900000	1668300000	1720600000	1819200000	940750000	878470000	58609	1033	55224	356751;356752;356753;356754;356755;356756;356757;356758;356759;356760;356761	481557;481558;481559;481560;481561;481562;481563;481564;481565;481566;481567;481568;481569;481570;481571;481572;481573;481574;481575;481576;481577;481578;481579;481580;481581;481582	481558			24	
YEWDVAEARK	1	Unmodified	1265.6041	0.60405094	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.61	6.23		8	8						7	6	5	6	6	38.459	35.29	2;3	3.1107E-14	30452	160511_QHF_FH_JSI11i_3	163.16	131.23			1.0415	1.0477	11.545	22	0	Median	1.2753	1.0609	8.9588	5	0	Median	0.9103	1.0504	8.9071	5	0	Median	1.0967	1.0608	10.913	6	0	Median	0.91755	0.966	16.477	6	0	Median	16408000000	7729200000	8678300000	1621300000	711310000	910020000	2906000000	1491100000	1414900000	6232100000	2875000000	3357100000	5648100000	2651800000	2996300000	58610	1033	55225	356762;356763;356764;356765;356766;356767;356768;356769;356770;356771;356772;356773;356774;356775;356776;356777;356778;356779;356780;356781;356782;356783;356784	481583;481584;481585;481586;481587;481588;481589;481590;481591;481592;481593;481594;481595;481596;481597;481598;481599;481600;481601;481602;481603;481604;481605;481606;481607;481608;481609;481610;481611;481612;481613;481614;481615;481616;481617;481618;481619;481620;481621;481622;481623;481624;481625;481626;481627	481586			44	
YEYCIWIDGLSALLGK	1	Unmodified	1899.9441	0.94407161	4141	Q96JJ3	ELMO2	Engulfment and cell motility protein 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				92.482	83.624	3	0.054743	46917	160513_QHF_FH_JSI9Kac_6	17.281	6.494			1.1681	1.0125	NaN	1	0	Median	1.1681	1.0125	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	75140000	33993000	41147000	75140000	33993000	41147000	0	0	0	0	0	0	0	0	0	58611	4141	55226	356785	481628	481628			1	
YEYHWADGTNIK	1	Unmodified	1495.6732	0.67319314	4788	Q9H8S9;Q7L9L4	MOB1A;MOB1B	MOB kinase activator 1A;MOB kinase activator 1B	yes	no	0	0	0	0			By MS/MS		2	0		2										2		44.319	43.826	2	0.0018645	37749	160511_QHF_FH_JSI11i_2	61.353	54.5			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58612	4788	55227	356786;356787	481629;481630	481630			2	
YEYQPFAGK	1	Unmodified	1101.5131	0.51311067	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.31	5.51	7	3					2	1		3	2	5	3	41.589	38.342	2	1.8263E-07	32870	160511_QHF_FH_JSI11i_2	121.62	96.696			1.1501	1.0936	40.32	11	4	Median	1.1966	0.98995	8.8664	2	0	Median	0.72011	0.84569	70.246	2	2	Median	1.3104	1.3131	40.11	4	2	Median	0.83637	0.8695	39.758	3	0	Plateau	1497900000	810440000	687450000	309530000	135130000	174400000	294720000	162760000	131960000	734860000	435770000	299090000	158790000	76794000	81992000	58613	472	55228	356788;356789;356790;356791;356792;356793;356794;356795;356796;356797;356798;356799;356800	481631;481632;481633;481634;481635;481636;481637;481638;481639;481640;481641;481642;481643;481644;481645;481646	481644			16	
YEYQPFAGKIK	2	Acetyl (K)	1384.7027	0.70270235	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	71	60.31	2	8.9595E-07	32306	160513_QHF_FH_JSI11Kac_5	107.15	70.461			0.65043	0.71255	34.723	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68459	0.81329	NaN	1	0	Median	0.4262	0.42181	NaN	1	0	Median	0.65043	0.71255	NaN	1	0	Median	20724000	14054000	6670900	0	0	0	3896500	2527600	1369000	15445000	10638000	4807000	1383200	888320	494860	58614	472	55229	356801;356802;356803	481647;481648;481649;481650	481648	240		4	
YEYVLHPR	0	Unmodified	1075.5451	0.5450795	3154	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			26.98	26.066	3	0.0071903	22679	160511_QHF_FH_JSI10i_2	41.575	28.987			0.75757	0.92359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.75757	0.92359	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35476000	19776000	15700000	0	0	0	35476000	19776000	15700000	0	0	0	0	0	0	58615	3154	55230	356804	481651	481651			1	
YFAATQFEPLAAR	0	Unmodified	1483.746	0.74596415	5334	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								1	2	2	70.259	69.526	2	3.0776E-10	60215	160511_QHF_FH_JSI12i_3	146.11	127.33			1.0209	1.0167	20.421	5	3	Median	NaN	NaN	NaN	0	0	Median	1.2562	1.432	NaN	1	1	Median	0.94444	0.93825	19.663	2	1	Median	0.96	0.99533	3.0013	2	1	Median	198220000	100110000	98101000	0	0	0	13930000	4931700	8997900	96509000	50902000	45607000	87777000	44281000	43496000	58616	5334	55231	356805;356806;356807;356808;356809	481652;481653;481654;481655;481656;481657	481656			6	
YFAEALGPLQSFQARPDDLLINTYPK	1	Unmodified	2966.5178	0.5178087	953	P0DMN0;P0DMM9	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	yes	no	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	101.17	101.17	3	8.3063E-51	87799	160511_QHF_FH_JSI12i_3	197.37	185.17			1.0404	1.0123	6.1742	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.142	1.0574	NaN	1	0	Median	0.94794	0.96901	NaN	1	0	Median	518040000	248150000	269890000	0	0	0	0	0	0	221950000	104590000	117360000	296090000	143560000	152530000	58617	953	55232	356810;356811	481658;481659	481658			2	
YFAEALGPLQSFQARPDDLLISTYPK	1	Unmodified	2939.5069	0.50690966	1699	P50225;P50226	SULT1A1;SULT1A2	Sulfotransferase 1A1;Sulfotransferase 1A2	yes	no	0	0	0	1	By matching	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		101.23	101.19	3	5.4689E-26	90242	160511_QHF_FH_JSI11i_3	138.93	133.03			1.2188	1.1578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2188	1.1578	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	430300000	215820000	214480000	91643000	39240000	52403000	132780000	79880000	52903000	205880000	96702000	109180000	0	0	0	58618	1699	55233	356812;356813;356814	481660;481661	481660			2	
YFAGNLASGGAAGATSLCFVYPLDFAR	0	Unmodified	2795.3377	0.33773584	1014;1013	P12236;P12235	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	no	no	0	0	0	0		By matching		By MS/MS	2.33	0.471		2	1								1		2	101.69	101.62	3	1.474E-11	88403	160511_QHF_FH_JSI12i_3	84.948	81.612			1.0183	1.1239	20.345	3	0	Median	NaN	NaN	NaN	0	0	Median	0.82061	1.0088	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.225	1.2965	20.201	2	0	Median	752120000	331100000	421010000	0	0	0	338460000	167220000	171230000	0	0	0	413660000	163880000	249780000	58619	1014;1013	55234	356815;356816;356817	481662	481662			1	
YFAHIIK	1	Unmodified	890.50142	0.50142377	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	4.62		2	10						2	5	3	2	4	30.674	28.801	2;3	0.0028434	23940	160511_QHF_FH_JSI9i_3	72.234	48.805			1.7172	1.5173	91.014	13	12	Median	2.2819	1.919	80.342	5	5	Median	1.0445	1.2143	90.076	2	1	Median	1.2095	1.1395	144.61	2	2	Median	0.68754	0.70228	110.57	4	4	Median	1684400000	849880000	834540000	396400000	163430000	232970000	177010000	98101000	78905000	286070000	132770000	153300000	824940000	455580000	369360000	58620	2168	55235	356818;356819;356820;356821;356822;356823;356824;356825;356826;356827;356828;356829;356830;356831	481663;481664;481665;481666;481667;481668;481669;481670;481671;481672;481673;481674;481675;481676;481677;481678;481679	481671			17	
YFALPHK	1	Unmodified	874.47012	0.47012364	2999	Q5VYS8	ZCCHC6	Terminal uridylyltransferase 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			5							1	2	1	1	32.409	31.345	3	0.010757	25453	160511_QHF_FH_JSI9i_3	41.502	32.262			0.91475	1.0209	33.861	4	1	Median	2.0431	1.6295	NaN	1	0	Median	0.87076	1.0209	27.481	2	1	Median	NaN	NaN	NaN	0	0	Median	0.7884	0.79617	NaN	1	0	Median	178110000	71810000	106300000	53388000	17253000	36135000	69291000	25390000	43900000	0	0	0	55427000	29167000	26260000	58621	2999	55236	356832;356833;356834;356835;356836	481680;481681;481682;481683	481682			4	
YFAQEALTVLSLA	0	Unmodified	1424.7551	0.75513185	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	102.24	102.14	2	0.00010208	88029	160511_QHF_FH_JSI12i_2	93.111	74.331			1.0145	1.025	16.746	8	1	Median	1.1659	0.97211	26.596	2	1	Median	0.69813	0.84404	4.3935	2	0	Median	1.1691	1.1661	8.0139	2	0	Median	0.95671	1.025	9.9247	2	0	Median	1994100000	1036500000	957580000	349550000	169720000	179830000	553570000	338620000	214950000	634490000	288440000	346050000	456440000	239690000	216750000	58622	1345	55237	356837;356838;356839;356840;356841;356842;356843;356844	481684;481685;481686;481687;481688;481689;481690;481691;481692;481693;481694;481695;481696	481686			13	
YFASEIIGFLSAIGHPFPK	1	Unmodified	2093.0986	0.098598418	3918	Q92990	GLMN	Glomulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			4						8	2	3	3	4	99.542	93.919	3;4	8.6924E-45	50720	160513_QHF_FH_JSI11Kac_6	180.14	164.2			0.94691	0.98715	36.553	12	4	Median	1.2683	1.0782	12.319	2	0	Median	0.81576	0.9781	16.78	3	1	Median	1.0812	1.0314	44.831	3	1	Median	0.81521	0.84101	55.757	4	2	Median	2692700000	1338500000	1354200000	579920000	271410000	308510000	589190000	320870000	268320000	873990000	421350000	452650000	649590000	324890000	324700000	58623	3918	55238	356845;356846;356847;356848;356849;356850;356851;356852;356853;356854;356855;356856	481697;481698;481699;481700;481701;481702;481703;481704;481705;481706;481707;481708;481709;481710;481711	481699			15	
YFASIHPASTK	1	Unmodified	1220.619	0.61897272	3743	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	25.28	24.621	2;3	0.0006377	19802	160511_QHF_FH_JSI9i_3	74.464	59.795			0.87771	0.93282	169.36	2	2	Median	NaN	NaN	NaN	0	0	Median	2.7053	3.0895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.28477	0.28165	NaN	1	1	Median	137700000	90723000	46973000	0	0	0	11575000	3115700	8459600	0	0	0	126120000	87607000	38514000	58624	3743	55239	356857;356858;356859	481712;481713;481714	481713			3	
YFDEHYEYR	0	Unmodified	1320.5411	0.54111633	1404	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS		2	0		4								1	1	2		31.192	30.507	2;3	0.00073319	25655	160511_QHF_FH_JSI11i_2	61.765	61.693			1.1336	1.0858	7.5227	4	0	Median	1.2163	1.003	NaN	1	0	Median	0.8416	1.0294	NaN	1	0	Median	1.1336	1.1553	1.2205	2	0	Median	NaN	NaN	NaN	0	0	Median	172810000	78156000	94653000	25792000	9933500	15859000	38908000	21569000	17339000	108110000	46654000	61455000	0	0	0	58625	1404	55240	356860;356861;356862;356863	481715;481716;481717	481715			2	
YFDEISQDTGK	1	Unmodified	1301.5776	0.57756142	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								2	2	2	2	35.247	34.566	2	3.4533E-06	30236	160511_QHF_FH_JSI9i_1	117.02	106.79			0.79329	0.64809	171.89	7	5	Median	1.6163	1.3225	100.87	2	2	Median	0.058579	0.069378	NaN	1	0	Median	0.97137	0.94683	181.25	2	2	Median	0.4078	0.43389	262.85	2	1	Median	4340400000	2367300000	1973100000	1200000000	399020000	801000000	571110000	539320000	31793000	1514000000	750960000	763040000	1055300000	678010000	377240000	58626	2010	55241	356864;356865;356866;356867;356868;356869;356870;356871	481718;481719;481720;481721;481722;481723;481724;481725;481726	481724			9	
YFDENAAEDFEK	1	Unmodified	1476.6045	0.60450445	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.878	51.212	2	0.0025038	46531	160511_QHF_FH_JSI12i_1	59.265	49.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58627	5626	55242	356872	481727	481727			1	
YFDFEEILAFVNHHWELLQLGK	1	Unmodified	2747.3748	0.37477328	2951	Q5T6S3	PHF19	PHD finger protein 19	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			99.468	93.748	4	7.7636E-38	55050	160513_QHF_FH_JSI10Kac_6	169.84	162.89			0.87427	1.0332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87427	1.0332	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	249500000	127230000	122270000	0	0	0	249500000	127230000	122270000	0	0	0	0	0	0	58628	2951	55243	356873	481728;481729	481728			2	
YFDGNLEK	1	Unmodified	984.45526	0.45526144	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			27.426	27.115	2	0.024588	23948	160511_QHF_FH_JSI10i_1	53.404	37.26			0.86746	1.0005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86746	1.0005	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	85125000	52518000	32607000	0	0	0	85125000	52518000	32607000	0	0	0	0	0	0	58629	5641	55244	356874	481730	481730			1	
YFDKASYR	1	Acetyl (K)	1090.5084	0.50835964	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15.1	0.781							2	3	3		3	3	2	41.13	31.452	2	1.2422E-06	17298	160513_QHF_FH_JSI11Kac_6	138.54	116.41			0.42991	0.46838	84.449	8	0	Median	NaN	NaN	NaN	0	0	Median	1.2167	1.4119	10.508	3	0	Median	0.25299	0.24681	6.0224	3	0	Median	0.42991	0.46838	42.344	2	0	Median	468470000	333330000	135150000	0	0	0	85846000	35652000	50193000	344520000	270270000	74251000	38108000	27405000	10702000	58630	1322	55245	356875;356876;356877;356878;356879;356880;356881;356882	481731;481732;481733;481734;481735;481736;481737	481731	1256		7	
YFDLGLPNRDQTDDQVTIDSALATQK	1	Unmodified	2923.4199	0.41994515	1635	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	1	2	2	86.092	85.759	3;4	4.0322E-17	76491	160511_QHF_FH_JSI11i_3	100.79	94.624			0.81211	0.81387	3.5262	6	1	Median	0.99516	0.85665	NaN	1	0	Median	0.63483	0.78834	NaN	1	0	Median	0.84812	0.80653	4.2409	2	0	Median	0.79621	0.81387	2.4791	2	1	Median	205810000	116190000	89621000	23734000	9420000	14314000	24147000	15370000	8777400	87202000	51532000	35671000	70728000	39869000	30859000	58631	1635	55246	356883;356884;356885;356886;356887;356888	481738;481739;481740;481741;481742;481743;481744;481745	481738			8	
YFDLIYVHNPVFK	1	Unmodified	1653.8555	0.8555146	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By matching		By matching	By MS/MS	16	0									3	1		1	1	84.037	74.911	3	0.00015111	39921	160513_QHF_FH_JSI12Kac_6	79.466	59.888			0.68414	0.72844	14.101	3	0	Median	1.0378	0.87059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.67388	0.65904	NaN	1	0	Median	0.68414	0.72844	NaN	1	0	Median	260550000	136980000	123570000	129750000	57660000	72087000	0	0	0	89990000	53730000	36260000	40816000	25594000	15222000	58632	907	55247	356889;356890;356891	481746	481746			1	
YFDLIYVHNPVFKPFEK	2	Unmodified	2155.1142	0.11424848	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			5						10	2	3	5	5	88.285	82.88	3;4	9.6278E-24	42128	160513_QHF_FH_JSI9Kac_6	151.62	142.58			0.97883	1.0699	68.287	15	8	Median	0.70935	0.6057	4.9011	2	1	Median	0.12384	0.14721	108.92	3	3	Plateau	1.2882	1.2346	45.809	5	1	Median	1.0199	1.0752	44.838	5	3	Median	4159100000	2604400000	1554700000	725000000	373350000	351640000	2106800000	1592900000	513890000	895660000	397290000	498360000	431670000	240820000	190850000	58633	907	55248	356892;356893;356894;356895;356896;356897;356898;356899;356900;356901;356902;356903;356904;356905;356906	481747;481748;481749;481750;481751;481752;481753;481754;481755;481756;481757;481758;481759;481760;481761;481762;481763;481764;481765;481766	481754			20	
YFDPANGK	1	Unmodified	910.41848	0.418482	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.45	5.73	1	4	2				4			3	3	2	3	17.543	14.039	2	0.00019177	13628	160511_QHF_FH_JSI10i_1	121.29	90.574			0.8929	0.8935	57.318	11	4	Median	1.0472	0.8935	14.394	3	0	Median	0.81458	0.93396	73.188	3	1	Median	0.86777	0.87586	6.1149	2	0	Median	0.43343	0.47219	100.35	3	3	Median	5889300000	2980500000	2908800000	653740000	323400000	330340000	4097200000	2053900000	2043300000	695220000	350430000	344790000	443100000	252760000	190340000	58634	1033	55249	356907;356908;356909;356910;356911;356912;356913;356914;356915;356916;356917	481767;481768;481769;481770;481771;481772;481773;481774;481775;481776;481777;481778;481779;481780;481781;481782	481772			16	
YFDPANGKFSK	2	Acetyl (K)	1314.6245	0.62445203	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	0.917						2	3	4	1	1	3	3	3	58.915	48.504	2	1.8842E-14	27141	160513_QHF_FH_JSI12Kac_4	152.54	141.71			0.78409	0.79856	37.054	9	0	Median	0.9688	0.82144	NaN	1	0	Median	0.86909	1.0419	7.8599	3	0	Median	0.4553	0.44931	35.463	3	0	Median	0.73409	0.79781	0.13454	2	0	Median	445480000	274620000	170860000	17532000	8073200	9458700	118430000	66978000	51449000	195540000	132410000	63134000	113980000	67159000	46822000	58635	1033	55250	356918;356919;356920;356921;356922;356923;356924;356925;356926;356927	481783;481784;481785;481786;481787;481788;481789;481790;481791;481792;481793;481794;481795	481790	852;859		13	
YFDQEMLNVHNLNYSSSR	0	Unmodified	2215.9957	0.99566626	4474	Q9BVK2	ALG8	Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	3	1	65.889	65.288	3	1.6106E-05	57752	160511_QHF_FH_JSI10i_2	80.382	73.583			0.88244	0.98215	29.892	6	3	Median	1.4695	1.2991	NaN	1	1	Median	0.85739	1.0649	NaN	1	0	Median	0.89774	0.90583	29.995	3	2	Median	0.5737	0.64407	NaN	1	0	Median	349520000	170970000	178550000	30876000	12476000	18400000	60145000	32749000	27396000	224100000	109260000	114840000	34391000	16480000	17912000	58636	4474	55251	356928;356929;356930;356931;356932;356933	481796;481797;481798;481799;481800;481801;481802	481802			7	
YFDSGDYNMAK	1	Unmodified	1309.5285	0.52850274	373;1874	O43768;P56211	ENSA;ARPP19	Alpha-endosulfine;cAMP-regulated phosphoprotein 19	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	37.951	37.338	2	1.9214E-10	33488	160511_QHF_FH_JSI11i_1	140.45	134.14			0.80486	0.93919	55.497	5	2	Median	0.77166	0.62725	NaN	1	0	Median	0.80486	0.95232	NaN	1	0	Median	0.98275	0.93919	NaN	1	0	Median	0.81441	0.86579	105.67	2	2	Median	3654900000	1782300000	1872600000	428670000	185890000	242780000	772160000	393960000	378200000	1028800000	470240000	558570000	1425200000	732170000	693040000	58637	373;1874	55252	356934;356935;356936;356937;356938	481803;481804;481805;481806;481807;481808;481809;481810	481803			8	
YFDSGDYNMAK	1	Oxidation (M)	1325.5234	0.52341736	373;1874	O43768;P56211	ENSA;ARPP19	Alpha-endosulfine;cAMP-regulated phosphoprotein 19	no	no	0	0	1	0	By MS/MS				1	0	1									1				38.573	37.357	2	0.00035408	32969	160511_QHF_FH_JSI9i_1	79.489	75.038			3.458	2.8906	NaN	1	0	Median	3.458	2.8906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	86018000	23260000	62758000	86018000	23260000	62758000	0	0	0	0	0	0	0	0	0	58638	373;1874	55252	356939	481811	481811		146	1	
YFDTVPVAAAMCVLK	1	Unmodified	1683.8364	0.83643542	2665	Q15393	SF3B3	Splicing factor 3B subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	2	2	99.214	99.041	2;3	9.8892E-05	86767	160511_QHF_FH_JSI11i_2	72.891	65.3			1.051	1.0816	23.766	6	2	Median	NaN	NaN	NaN	0	0	Median	0.80403	0.99175	51.136	2	2	Median	1.051	1.0816	1.9768	2	0	Median	1.0447	1.1048	8.6224	2	0	Median	122810000	57783000	65029000	0	0	0	28686000	13426000	15260000	61035000	31032000	30003000	33091000	13325000	19766000	58639	2665	55253	356940;356941;356942;356943;356944;356945;356946	481812;481813;481814;481815;481816;481817	481814			6	
YFDWILISR	0	Unmodified	1211.6339	0.63389451	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	87.149	78.876	2	1.8098E-07	43354	160513_QHF_FH_JSI9Kac_6	157.91	140.67			0.88593	0.88523	17.182	4	0	Median	1.175	1.0231	NaN	1	0	Median	0.61645	0.73922	NaN	1	0	Median	1.0687	1.0113	NaN	1	0	Median	0.73439	0.77487	NaN	1	0	Median	1396100000	763380000	632710000	264150000	131460000	132680000	456070000	273200000	182870000	417830000	231860000	185970000	258050000	126860000	131190000	58640	4991	55254	356947;356948;356949;356950	481818;481819;481820;481821;481822;481823;481824	481821			7	
YFEADPPGQVAASPDPTT	0	Unmodified	1861.837	0.83702358	345	O43598	DNPH1	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	4									1	1	1	1	58.367	57.715	2	6.2706E-07	52224	160511_QHF_FH_JSI10i_1	116.13	101.98			0.89275	0.90315	10.422	4	2	Median	0.90885	0.74529	NaN	1	1	Median	0.79025	0.93868	NaN	1	1	Median	0.93391	0.90883	NaN	1	0	Median	0.87693	0.8975	NaN	1	0	Median	278050000	154610000	123450000	84493000	49179000	35314000	61085000	32410000	28676000	74535000	39779000	34755000	57941000	33241000	24700000	58641	345	55255	356951;356952;356953;356954	481825;481826;481827;481828	481827			4	
YFEAVQLSSQQR	0	Unmodified	1454.7154	0.7153923	3429	Q8IWV7	UBR1	E3 ubiquitin-protein ligase UBR1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		45.722	45.219	2	7.0215E-05	39845	160511_QHF_FH_JSI10i_2	85.958	66.196			1.7954	1.7879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7954	1.7879	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	31847000	7629400	24218000	0	0	0	0	0	0	31847000	7629400	24218000	0	0	0	58642	3429	55256	356955;356956;356957	481829;481830;481831	481831			3	
YFEGVSPK	1	Unmodified	925.45453	0.45453316	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.68	3.01	6	6	6					1		5	6	4	4	27.338	26.163	2	0.0016363	21912	160511_QHF_FH_JSI12i_2	86.833	70.679			0.75672	0.6677	76.64	19	17	Median	0.75672	0.61432	74.651	5	5	Median	0.77221	0.90343	74.117	6	6	Median	1.2253	1.233	107.81	4	3	Median	0.85071	0.91236	71.123	4	3	Median	4241000000	2195500000	2045500000	872930000	463850000	409080000	1574300000	772190000	802070000	1001100000	503770000	497370000	792710000	455730000	336980000	58643	2094	55257	356958;356959;356960;356961;356962;356963;356964;356965;356966;356967;356968;356969;356970;356971;356972;356973;356974;356975;356976	481832;481833;481834;481835;481836;481837;481838;481839;481840;481841;481842;481843;481844;481845;481846;481847;481848;481849;481850;481851;481852	481835			21	
YFEIQFSPGGEPDGGK	1	Unmodified	1726.7839	0.7838658	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	6	2								1	2	2	3	70.045	69.436	2	4.8261E-05	62839	160511_QHF_FH_JSI10i_1	106.61	70.648			1.2018	1.247	38.431	7	7	Median	2.6189	2.1902	NaN	1	1	Median	1.068	1.2337	18.545	2	2	Median	1.3257	1.247	NaN	1	1	Median	1.1789	1.2039	37.63	3	3	Plateau	177100000	78501000	98597000	8066700	2085600	5981100	75558000	36309000	39250000	24797000	7151400	17645000	68676000	32955000	35721000	58644	2332	55258	356977;356978;356979;356980;356981;356982;356983;356984	481853;481854;481855;481856;481857;481858;481859;481860	481858			8	
YFEITDESPYVHYLNTFSSK	1	Unmodified	2439.1271	0.12705759	5411	Q9ULV4	CORO1C	Coronin-1C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	1	3	2	92.994	92.728	3	2.6596E-15	81516	160511_QHF_FH_JSI11i_2	154.26	150			1.5463	1.5392	42.459	7	3	Median	0.74562	0.63076	NaN	1	0	Median	0.75173	0.91644	NaN	1	1	Median	1.8582	1.8609	13.053	3	2	Median	1.2357	1.3098	22.821	2	0	Median	463930000	183360000	280570000	29406000	15650000	13756000	62424000	30432000	31992000	246850000	82517000	164330000	125250000	54762000	70492000	58645	5411	55259	356985;356986;356987;356988;356989;356990;356991	481861;481862;481863;481864;481865;481866;481867;481868;481869;481870;481871;481872;481873;481874	481867			14	
YFEVEEADGNK	1	Unmodified	1299.5619	0.56191135	1456	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	32.47	31.872	2	7.8477E-05	28391	160511_QHF_FH_JSI11i_1	100.57	77.829			2.0095	1.9658	48.151	4	4	Median	NaN	NaN	NaN	0	0	Median	2.324	2.8393	NaN	1	1	Median	2.1242	1.9888	NaN	1	1	Median	1.2969	1.3261	54.032	2	2	Median	334400000	122150000	212250000	23329000	0	23329000	66004000	20100000	45904000	70574000	22490000	48084000	174490000	79556000	94937000	58646	1456	55260	356992;356993;356994;356995;356996	481875;481876;481877;481878;481879	481875			5	
YFEYIMAK	1	Unmodified	1063.5049	0.50485417	1035	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	56.71	55.622	2	0.0075998	47742	160511_QHF_FH_JSI12i_2	68.787	33.293			0.79403	0.68219	91.287	3	3	Median	0.79403	0.68219	NaN	1	1	Median	1.5976	1.9714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.288	0.32032	NaN	1	1	Median	393260000	149340000	243920000	96730000	34068000	62662000	208100000	61467000	146630000	0	0	0	88431000	53809000	34622000	58647	1035	55261	356997;356998;356999	481880;481881;481882	481880			3	
YFFAVDTAYVAK	1	Unmodified	1393.6918	0.69180331	640	O95070	YIF1A	Protein YIF1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.22	6.96		5							4	2	3	2	2	77.316	73.176	2	1.3579E-15	37001	160513_QHF_FH_JSI12Kac_6	138.66	107.24			1.1188	0.96919	35.442	9	4	Median	1.628	1.3873	50.722	2	1	Median	0.73739	0.84944	30.926	3	2	Plateau	0.97169	0.9523	46.59	2	0	Median	0.94375	1.0189	41.377	2	1	Median	744810000	367250000	377570000	152370000	59189000	93182000	261670000	130310000	131360000	185860000	97369000	88494000	144910000	80383000	64530000	58648	640	55262	357000;357001;357002;357003;357004;357005;357006;357007;357008	481883;481884;481885;481886;481887;481888;481889;481890;481891;481892;481893;481894	481892			12	
YFFDFLDEQAEK	1	Unmodified	1550.6929	0.69292553	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			91.832	91.405	2	0.0059076	81194	160511_QHF_FH_JSI10i_2	61.958	52.071			1.1879	1.4473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1879	1.4473	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	54835000	24038000	30797000	0	0	0	54835000	24038000	30797000	0	0	0	0	0	0	58649	236	55263	357009	481895	481895			1	
YFFFDDGNGLK	1	Unmodified	1321.5979	0.59790293	1928	P61009	SPCS3	Signal peptidase complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	2	1	1	78.826	77.762	2	9.4414E-05	68381	160511_QHF_FH_JSI11i_2	88.136	73.999			1.0882	1.0505	17.132	5	1	Median	1.2459	1.0249	NaN	1	0	Median	0.76218	0.89858	22.095	2	1	Median	1.1096	1.1266	NaN	1	0	Median	1.0882	1.2006	NaN	1	0	Median	646140000	298570000	347570000	19836000	7972100	11864000	166970000	92792000	74180000	260750000	108600000	152150000	198580000	89200000	109380000	58650	1928	55264	357010;357011;357012;357013;357014	481896;481897;481898;481899;481900	481900			5	
YFFGEGYTYGAQLQK	1	Unmodified	1770.8253	0.82533668	3110	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	72.671	72.034	2	1.2815E-06	64287	160511_QHF_FH_JSI11i_3	133.89	121.28			0.22515	0.2215	58.378	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4071	0.39367	81.331	2	0	Median	0.43011	0.46835	NaN	1	0	Median	106110000	79897000	26215000	0	0	0	0	0	0	80810000	62463000	18347000	25302000	17434000	7868500	58651	3110	55265	357015;357016;357017;357018;357019	481901;481902;481903;481904;481905;481906	481901			6	
YFFLLNLK	1	Unmodified	1056.6008	0.60080346	5472	Q9UPZ3	HPS5	Hermansky-Pudlak syndrome 5 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	91.908	85.276	2	0.00040871	45577	160513_QHF_FH_JSI11Kac_6	114.02	103.31			0.82844	0.85206	24.738	5	2	Median	1.7059	1.446	NaN	1	1	Median	0.71359	0.85206	NaN	1	1	Median	0.82844	0.79597	NaN	1	0	Median	0.80737	0.84764	3.0175	2	0	Median	455530000	272040000	183500000	97213000	53189000	44025000	139000000	98372000	40631000	115720000	69236000	46481000	103600000	51240000	52360000	58652	5472	55266	357020;357021;357022;357023;357024	481907;481908;481909;481910;481911;481912;481913	481908			7	
YFFTGSR	0	Unmodified	876.413	0.41300269	3050	Q6IA86	ELP2	Elongator complex protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	32.194	31.47	2	0.0076848	25804	160511_QHF_FH_JSI9i_3	86.512	47.294			0.89821	1.0081	8.2918	4	1	Median	1.2256	1.0166	NaN	1	0	Median	0.89272	1.066	NaN	1	0	Median	0.90372	0.87811	NaN	1	1	Median	0.88599	0.99968	NaN	1	0	Median	326910000	168460000	158450000	99896000	44223000	55673000	92128000	57102000	35025000	63351000	29441000	33911000	71536000	37691000	33845000	58653	3050	55267	357025;357026;357027;357028	481914;481915;481916;481917	481916			4	
YFFYSSGEK	1	Unmodified	1126.4971	0.49712625	1689;1688	P49841;P49840	GSK3B;GSK3A	Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	1	3	2	1	47.685	43.204	2	6.0004E-06	37115	160511_QHF_FH_JSI11i_2	113.71	102.48			1.1129	0.94614	29.184	7	4	Median	1.1129	0.94614	NaN	1	1	Median	0.87243	1.0513	30.866	3	3	Plateau	0.81803	0.79785	5.1125	2	0	Median	1.3533	1.5085	NaN	1	0	Median	417360000	222980000	194380000	11616000	5747700	5868200	143610000	76086000	67527000	165120000	91694000	73424000	97010000	49451000	47559000	58654	1689;1688	55268	357029;357030;357031;357032;357033;357034;357035	481918;481919;481920;481921;481922;481923;481924;481925;481926	481922			9	
YFGDIISVGQR	0	Unmodified	1253.6404	0.64043645	4008	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	64.149	64.004	2	0.00038672	55380	160511_QHF_FH_JSI12i_3	109.44	92.721			0.98035	0.95886	37.8	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3189	1.2527	NaN	1	1	Median	0.72868	0.73396	NaN	1	1	Median	189150000	91168000	97983000	0	0	0	0	0	0	107500000	49479000	58019000	81654000	41689000	39965000	58655	4008	55269	357036;357037;357038	481927;481928;481929	481929			3	
YFGGMVWYFVNNK	1	Unmodified	1623.7544	0.75442035	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	2	2	2	3	90.681	82.371	2;3	2.4248E-109	47674	160513_QHF_FH_JSI10Kac_6	263.57	252.35			0.87139	0.89199	13.338	8	0	Median	0.99381	0.84373	12.16	2	0	Median	0.73478	0.87558	5.5154	2	0	Median	1.055	0.9995	10.849	2	0	Median	0.73966	0.77595	16.82	2	0	Median	4273600000	2266500000	2007100000	773640000	330950000	442680000	2307000000	1410300000	896650000	746680000	285780000	460900000	446320000	239470000	206850000	58656	2104	55270	357039;357040;357041;357042;357043;357044;357045;357046;357047	481930;481931;481932;481933;481934;481935;481936;481937;481938;481939;481940;481941;481942;481943;481944;481945	481945			16	
YFGGMVWYFVNNK	1	Oxidation (M)	1639.7493	0.74933497	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	2	3	3	2	82.942	74.856	2;3	7.3708E-63	40506	160513_QHF_FH_JSI9Kac_6	224.24	217.11			0.74183	0.781	18.575	10	5	Median	1.072	0.91652	2.6278	2	0	Median	0.66331	0.76417	20.97	3	3	Median	0.65787	0.63213	8.917	3	2	Plateau	0.87146	0.92264	1.2531	2	0	Median	1022000000	544640000	477370000	224350000	90270000	134080000	463890000	274290000	189600000	172180000	96955000	75224000	161580000	83121000	78462000	58657	2104	55270	357048;357049;357050;357051;357052;357053;357054;357055;357056;357057	481946;481947;481948;481949;481950;481951;481952;481953;481954;481955;481956	481949		1781	11	
YFGGMVWYFVNNKK	2	Unmodified	1751.8494	0.84938336	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			83.215	77.622	3	0.00029983	43090	160513_QHF_FH_JSI10Kac_6	83.194	73.137			2.2599	2.6712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.2599	2.6712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135350000	48862000	86491000	0	0	0	135350000	48862000	86491000	0	0	0	0	0	0	58658	2104	55271	357058	481957	481957			1	
YFGGTEDR	0	Unmodified	943.40356	0.40356022	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.71	3	4	2					3		3	2	3	4	13.738	11.071	2	0.00060547	9845	160511_QHF_FH_JSI9i_2	102.72	60.255			0.88232	0.88912	11.892	12	0	Median	1.0251	0.86174	14.418	3	0	Median	0.71176	0.87046	14.959	2	0	Median	0.87395	0.91737	13.955	3	0	Median	0.83367	0.92159	12.298	4	0	Median	4117500000	2136700000	1980800000	637810000	318270000	319540000	893440000	514710000	378730000	1414400000	719920000	694460000	1171800000	583780000	588050000	58659	2751	55272	357059;357060;357061;357062;357063;357064;357065;357066;357067;357068;357069;357070	481958;481959;481960;481961;481962;481963;481964;481965;481966;481967;481968;481969;481970;481971	481965			14	
YFGPNLLNTVK	1	Unmodified	1264.6816	0.68157298	2008	P62487	POLR2G	DNA-directed RNA polymerase II subunit RPB7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	72.335	71.4	2	1.5619E-05	63592	160511_QHF_FH_JSI11i_3	105.4	84.495			1.0915	1.17	26.28	5	2	Median	1.4652	1.17	NaN	1	1	Median	1.3366	1.5327	36.232	2	1	Median	1.0915	1.0137	NaN	1	0	Median	1.0705	1.1125	NaN	1	0	Median	376490000	174330000	202160000	48797000	22120000	26677000	93244000	46083000	47160000	100090000	42198000	57894000	134360000	63929000	70430000	58660	2008	55273	357071;357072;357073;357074;357075	481972;481973;481974;481975;481976;481977;481978;481979	481973			8	
YFHLVLPTDELAEPKK	2	Unmodified	1899.0142	0.014200086	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	74.461	74.171	4	0.0063106	64363	160511_QHF_FH_JSI12i_3	46.926	36.458			1.8115	1.8439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8115	1.8439	NaN	1	1	Median	33608000	14598000	19010000	0	0	0	0	0	0	0	0	0	33608000	14598000	19010000	58661	5622	55274	357076	481980	481980			1	
YFHPPAHLQAK	1	Unmodified	1307.6775	0.67749065	4947;3002	Q9NR56;Q5VZF2	MBNL1;MBNL2	Muscleblind-like protein 1;Muscleblind-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			13							4	2	2	5	25.556	24.928	2;3;4	5.9094E-05	19890	160511_QHF_FH_JSI12i_3	77.662	58.99			1.2279	1.2183	56.008	13	7	Median	0.91479	0.76271	45.746	4	3	Median	1.4849	1.7346	41.798	2	1	Median	1.2675	1.1939	2.8562	2	0	Median	1.5676	1.6002	74.752	5	3	Median	2151600000	987730000	1163900000	485840000	212860000	272980000	264790000	123400000	141390000	382300000	192150000	190150000	1018700000	459320000	559380000	58662	4947;3002	55275	357077;357078;357079;357080;357081;357082;357083;357084;357085;357086;357087;357088;357089	481981;481982;481983;481984;481985;481986;481987;481988;481989;481990;481991;481992;481993;481994;481995;481996	481993			15	
YFHVVIAGPQDSPFEGGTFK	1	Unmodified	2195.0688	0.068754852	1937	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		6	10						8	4	7	7	6	81.304	77.966	2;3	2.4567E-138	40508	160513_QHF_FH_JSI10Kac_6	315.73	259.61			1.0348	1.0323	21.499	20	9	Median	1.1457	0.96625	31.678	4	3	Median	0.90491	1.0595	29.029	5	2	Median	1.1721	1.1417	13.846	6	3	Median	0.89626	0.95229	8.014	5	1	Median	7858300000	3654100000	4204100000	933230000	445150000	488080000	1848600000	865900000	982740000	2450400000	1079500000	1370900000	2626000000	1263600000	1362400000	58663	1937	55276	357090;357091;357092;357093;357094;357095;357096;357097;357098;357099;357100;357101;357102;357103;357104;357105;357106;357107;357108;357109;357110;357111;357112;357113	481997;481998;481999;482000;482001;482002;482003;482004;482005;482006;482007;482008;482009;482010;482011;482012;482013;482014;482015;482016;482017;482018;482019;482020;482021;482022;482023;482024;482025;482026;482027;482028;482029;482030;482031;482032;482033;482034;482035;482036;482037;482038;482039;482040;482041	482039			45	
YFIEDGR	0	Unmodified	898.41848	0.418482	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	28.7	27.791	2	0.019133	23953	160511_QHF_FH_JSI9i_2	58.819	49.348			1.0852	1.1528	20.934	4	0	Median	1.4382	1.2556	NaN	1	0	Median	0.65267	0.79728	NaN	1	0	Median	1.2277	1.2294	NaN	1	0	Median	0.95928	1.0809	NaN	1	0	Median	478340000	257870000	220470000	124660000	64213000	60444000	137280000	80471000	56808000	103570000	47945000	55622000	112840000	65240000	47601000	58664	1388	55277	357114;357115;357116;357117	482042;482043;482044	482043			3	
YFIHYSGWNK	1	Unmodified	1313.6193	0.61930707	5256	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	2	4	2	2	58.165	49.722	2;3	3.8927E-07	26328	160513_QHF_FH_JSI9Kac_6	122.96	108.09			1.1009	1.1259	13.619	9	0	Median	1.1852	1.0086	11	2	0	Median	0.85969	1.0199	8.8541	3	0	Median	1.2244	1.1961	3.1826	2	0	Median	1.1846	1.2922	19.485	2	0	Median	540130000	277030000	263100000	104310000	44324000	59986000	282220000	166450000	115760000	80552000	35376000	45175000	73056000	30878000	42179000	58665	5256	55278	357118;357119;357120;357121;357122;357123;357124;357125;357126;357127	482045;482046;482047;482048;482049;482050;482051;482052;482053;482054;482055	482049			9	
YFILPDSLPLDTLLVDVEPK	1	Unmodified	2286.2399	0.23990251	2001	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.75	4	8	9							3	7	7	4	103.23	103.16	2;3	1.1831E-99	89022	160511_QHF_FH_JSI12i_2	260.85	243.78			0.95085	0.9693	21.232	19	4	Median	1.015	0.87316	6.0858	3	1	Plateau	0.73358	0.9047	25.478	5	1	Median	1.0813	1.0808	18.58	7	2	Median	0.9144	1.0407	6.8887	4	0	Linear	2682900000	1404900000	1278000000	342030000	174590000	167450000	642990000	367030000	275960000	776290000	375510000	400780000	921540000	487750000	433790000	58666	2001	55279	357128;357129;357130;357131;357132;357133;357134;357135;357136;357137;357138;357139;357140;357141;357142;357143;357144;357145;357146;357147;357148	482056;482057;482058;482059;482060;482061;482062;482063;482064;482065;482066;482067;482068;482069;482070;482071;482072;482073;482074;482075;482076;482077;482078;482079;482080;482081;482082;482083;482084;482085;482086;482087;482088;482089	482063			34	
YFILPYVIYR	0	Unmodified	1345.7434	0.74344495	2877	Q5I7T1;Q5BKT4	ALG10B;ALG10	Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase;Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	91.212	83.038	2	2.3E-06	44323	160513_QHF_FH_JSI12Kac_6	122.5	106.03			0.70476	0.75747	5.7727	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68894	0.83144	NaN	1	0	Median	0.79385	0.7481	NaN	1	0	Median	0.70476	0.75747	NaN	1	0	Median	540760000	311270000	229490000	0	0	0	284990000	167170000	117810000	164410000	94362000	70047000	91363000	49736000	41627000	58667	2877	55280	357149;357150;357151;357152	482090;482091;482092;482093	482092			4	
YFISHVLAFFAASDGIVNENLVER	0	Unmodified	2710.3755	0.37550156	1373	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	96.268	87.944	3	4.1348E-52	52219	160513_QHF_FH_JSI10Kac_6	175.28	164.29			1.1919	1.1852	58.376	4	3	Median	1.6184	1.3788	32.517	2	2	Median	1.1084	1.2822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.41919	0.44647	NaN	1	1	Median	604140000	256390000	347750000	279470000	82294000	197180000	190980000	72856000	118120000	0	0	0	133690000	101240000	32450000	58668	1373	55281	357153;357154;357155;357156	482094;482095;482096;482097	482097			4	
YFKLQTFVR	1	Acetyl (K)	1242.6761	0.67609367	3255	Q7Z353	HDX	Highly divergent homeobox	yes	yes	1	0	0	1		By MS/MS	By MS/MS		16	0									2		1	1		47.731	38.581	2	0.026104	21260	160513_QHF_FH_JSI10Kac_6	60.59	7.4197			0.22709	0.24316	32.461	2	2	Median	NaN	NaN	NaN	0	0	Median	0.16753	0.19329	NaN	1	1	Median	0.30783	0.3059	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8738400	7293500	1444900	0	0	0	5422400	4683100	739320	3315900	2610300	705560	0	0	0	58669	3255	55282	357157;357158	482098;482099	482099	2815		2	
YFLASLDR	0	Unmodified	983.50763	0.50763136	3115	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.6	0.49		2	3								2	2	1	54.044	53.398	2	0.0057259	47210	160511_QHF_FH_JSI10i_2	64.757	38.064			1.1888	1.2394	10.84	5	0	Median	NaN	NaN	NaN	0	0	Median	1.1309	1.339	10.928	2	0	Median	1.1643	1.125	3.4405	2	0	Median	1.3008	1.3122	NaN	1	0	Median	380630000	175840000	204790000	0	0	0	100090000	51372000	48715000	200920000	94537000	106380000	79627000	29935000	49692000	58670	3115	55283	357159;357160;357161;357162;357163	482100;482101;482102;482103;482104	482103			5	
YFLFYDGETVSGK	1	Unmodified	1524.7137	0.71366097	2829	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	77.324	76.49	2	5.0463E-05	65974	160511_QHF_FH_JSI12i_2	116.23	100.01			1.1247	1.3755	14.137	4	4	Linear	1.0899	0.94522	NaN	1	1	Median	0.9808	1.1969	NaN	1	1	Median	1.3144	1.2887	NaN	1	1	Median	1.1605	1.2534	NaN	1	1	Median	144670000	65855000	78818000	24482000	9497800	14984000	25087000	12109000	12978000	55275000	25732000	29543000	39829000	18516000	21312000	58671	2829	55284	357164;357165;357166;357167	482105;482106;482107;482108	482105			4	
YFLHTGHLTIAGCK	1	Unmodified	1616.8133	0.81333221	1665	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			2						2			2	2	51.373	46.418	3;4	5.5967E-08	25087	160513_QHF_FH_JSI11Kac_6	114.56	100.31			1.0247	1.0563	29.899	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.92395	0.8678	6.5325	2	0	Median	1.2873	1.4006	18.638	2	0	Median	160220000	64428000	95793000	0	0	0	0	0	0	69844000	26384000	43461000	90377000	38045000	52333000	58672	1665	55285	357168;357169;357170;357171	482109;482110;482111;482112	482109			3	
YFLHTSTPLDYEATR	0	Unmodified	1812.8683	0.86826413	401	O60245	PCDH7	Protocadherin-7	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	59.171	59.171	2;3	5.2019E-05	52510	160511_QHF_FH_JSI11i_3	78.096	58.335			1.0166	0.9439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0166	0.9439	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	111700000	68054000	43647000	0	0	0	0	0	0	111700000	68054000	43647000	0	0	0	58673	401	55286	357172;357173;357174	482113;482114;482115	482114			3	
YFLKPEVLQK	2	Unmodified	1263.7227	0.72270951	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	1	2	2	51.683	50.938	2;3	0.00039526	41703	160511_QHF_FH_JSI9i_3	68.893	51.526			0.64174	0.61183	21.046	7	1	Median	0.88693	0.71057	18.879	2	0	Median	0.66968	0.78381	NaN	1	0	Median	0.54094	0.51386	22.602	2	1	Median	0.57976	0.57793	8.0625	2	0	Median	1261100000	748610000	512470000	325870000	165260000	160610000	252420000	148590000	103830000	269430000	178180000	91249000	413360000	256580000	156790000	58674	3122	55287	357175;357176;357177;357178;357179;357180;357181	482116;482117;482118;482119;482120;482121;482122;482123	482119			8	
YFLNHIDQTTTWQDPR	0	Unmodified	2033.9595	0.95953875	1598	P46937	YAP1	Transcriptional coactivator YAP1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	60.505	60.324	3	0.0031191	53668	160511_QHF_FH_JSI11i_3	42.059	36.215			0.74435	0.75896	29.073	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72857	0.6686	NaN	1	1	Median	0.91373	0.94009	30.268	2	2	Median	318240000	171660000	146570000	0	0	0	0	0	0	93377000	46150000	47227000	224860000	125510000	99346000	58675	1598	55288	357182;357183;357184	482124;482125;482126;482127	482124			4	
YFLNHIEK	1	Unmodified	1062.5498	0.54983053	4611	Q9GZV5	WWTR1	WW domain-containing transcription regulator protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	31.093	30.371	3	0.0018257	25398	160511_QHF_FH_JSI12i_3	56.729	49.249			0.43029	0.47922	65.291	2	1	Median	NaN	NaN	NaN	0	0	Median	0.24861	0.30201	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.74473	0.76039	NaN	1	0	Median	201060000	125720000	75338000	0	0	0	82827000	68028000	14798000	0	0	0	118230000	57694000	60539000	58676	4611	55289	357185;357186	482128;482129;482130	482129			3	
YFLNLVLVDEEDRR	0	Unmodified	1779.9155	0.91554867	525	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	yes	yes	0	0	0	1		By MS/MS	By MS/MS		6.25	5.63			3						1		2	2		81.937	79.657	3	0.00010868	68756	160511_QHF_FH_JSI10i_3	54.276	36.787			0.81206	1.0818	12.397	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.93216	1.1	17.48	2	1	Median	1.1596	1.0818	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	227400000	120050000	107350000	0	0	0	160290000	89252000	71034000	67115000	30795000	36320000	0	0	0	58677	525	55290	357187;357188;357189;357190	482131;482132;482133;482134;482135	482134			5	
YFLPPGVR	0	Unmodified	947.52289	0.52288749	3313	Q86TX2;P49753	ACOT1;ACOT2	Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial	yes	no	0	0	0	0		By MS/MS	By MS/MS		3	0			2								1	1		49.365	48.582	2	0.042918	42699	160511_QHF_FH_JSI11i_3	38.836	20.061			1.042	1.0868	29.141	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1353	1.3354	NaN	1	1	Median	0.95639	0.88439	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	66255000	33950000	32305000	0	0	0	19361000	8579700	10781000	46894000	25370000	21524000	0	0	0	58678	3313	55291	357191;357192	482136;482137	482136			2	
YFLQGMGYIPSASMTR	0	Unmodified	1820.859	0.85896177	5288	Q9UGV2	NDRG3	Protein NDRG3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.09	6.08		5	3						3	2	3	3	3	82.678	80.035	2	2.176E-53	41598	160513_QHF_FH_JSI10Kac_6	201.04	184.67			0.9775	0.97147	10.363	11	4	Median	1.1651	0.99109	2.8282	2	1	Median	0.86618	1.0396	5.3122	3	0	Median	1.0232	0.96258	9.9205	3	0	Plateau	1.0681	1.0705	15.147	3	3	Median	532470000	294150000	238320000	67052000	30809000	36243000	134240000	71955000	62286000	167960000	99688000	68272000	163210000	91696000	71519000	58679	5288	55292	357193;357194;357195;357196;357197;357198;357199;357200;357201;357202;357203	482138;482139;482140;482141;482142;482143;482144;482145;482146;482147;482148;482149;482150;482151;482152	482152			15	
YFLSGSLDGK	1	Unmodified	1085.5393	0.53932542	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	51.504	50.334	2	0.010075	44404	160511_QHF_FH_JSI10i_2	57.931	37.649			0.44943	0.5169	4.8592	2	2	Median	NaN	NaN	NaN	0	0	Median	0.43192	0.53497	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.46765	0.49944	NaN	1	1	Median	69359000	46598000	22760000	0	0	0	28302000	21009000	7293100	0	0	0	41056000	25589000	15467000	58680	2902	55293	357204;357205	482153;482154	482154			2	
YFLVGAGAIGCELLK	1	Unmodified	1609.8538	0.85380004	1208	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		8	4						8	4	5	6	5	94.783	91.591	2;3	5.4878E-33	44766	160513_QHF_FH_JSI11Kac_6	206.11	199.88			0.80073	0.8641	44.351	20	7	Median	0.90121	0.78756	39.958	4	1	Median	0.69594	0.86256	23.38	5	3	Median	0.69314	0.66715	41.899	6	1	Median	1.1097	1.1676	64.308	5	2	Median	1264300000	715140000	549170000	165950000	77767000	88185000	334320000	187510000	146810000	477530000	293840000	183680000	286500000	156020000	130480000	58681	1208	55294	357206;357207;357208;357209;357210;357211;357212;357213;357214;357215;357216;357217;357218;357219;357220;357221;357222;357223;357224;357225	482155;482156;482157;482158;482159;482160;482161;482162;482163;482164;482165;482166;482167;482168;482169;482170;482171;482172;482173;482174;482175;482176;482177;482178;482179;482180;482181;482182;482183;482184;482185;482186;482187	482163			33	
YFLWPLQHGTLHFCGFK	1	Unmodified	2150.056	0.056022096	1090	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.9	3.66			2						21	4	4	8	7	87.891	80.107	2;3;4	3.7073E-167	44352	160513_QHF_FH_JSI10Kac_6	345.51	316.21			0.98107	1.0018	39.65	23	4	Median	1.3458	1.1829	13.332	4	1	Median	0.83635	0.98803	12.116	4	2	Median	0.93094	0.88951	46.043	8	1	Median	0.84657	0.89068	42.67	7	0	Median	40366000000	19586000000	20779000000	4998800000	1974200000	3024600000	21892000000	11240000000	10652000000	7960500000	4011500000	3949000000	5514600000	2360600000	3153900000	58682	1090	55295	357226;357227;357228;357229;357230;357231;357232;357233;357234;357235;357236;357237;357238;357239;357240;357241;357242;357243;357244;357245;357246;357247;357248	482188;482189;482190;482191;482192;482193;482194;482195;482196;482197;482198;482199;482200;482201;482202;482203;482204;482205;482206;482207;482208;482209;482210;482211;482212;482213;482214	482212			26	
YFLWVVK	1	Unmodified	953.53747	0.53747492	2043	P62993	GRB2	Growth factor receptor-bound protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.62	6.27		5	4						4	3	3	3	4	81.531	78.448	2	7.039E-05	41393	160513_QHF_FH_JSI10Kac_6	123.34	103.05			0.9346	0.99767	16.002	13	3	Median	1.1498	0.96433	12.466	3	1	Plateau	0.80196	0.9446	10.054	3	0	Plateau	0.96931	0.90883	4.4139	3	0	Plateau	0.99482	1.035	20.827	4	2	Median	4812000000	2195200000	2616800000	1235200000	504220000	730940000	1289800000	674080000	615720000	1282600000	610370000	672190000	1004500000	406520000	597940000	58683	2043	55296	357249;357250;357251;357252;357253;357254;357255;357256;357257;357258;357259;357260;357261	482215;482216;482217;482218;482219;482220;482221;482222;482223;482224;482225;482226;482227;482228;482229;482230;482231;482232;482233;482234;482235;482236;482237;482238;482239;482240;482241;482242;482243	482243			29	
YFNAAVNHVDFSQNVAVANYINK	1	Unmodified	2597.2663	0.26628546	4287	Q99574	SERPINI1	Neuroserpin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			4								2	1	1	79.604	78.866	3	4.1262E-15	68518	160511_QHF_FH_JSI12i_3	123.43	115.86			1.1028	1.0591	10.181	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.79468	0.96411	NaN	1	1	Median	1.0393	0.97173	NaN	1	0	Median	1.1265	1.1544	NaN	1	0	Median	126610000	69682000	56929000	0	0	0	10077000	4981900	5094700	50275000	25099000	25176000	66259000	39601000	26659000	58684	4287	55297	357262;357263;357264;357265	482244;482245;482246;482247;482248	482248			5	
YFNEGTVLAHYADVLGLLLR	0	Unmodified	2263.2001	0.20010338	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.517	90.09	3	5.2833E-58	51294	160513_QHF_FH_JSI9Kac_6	201.31	180.26			1.266	1.1392	88.84	4	1	Median	1.2976	1.1233	NaN	1	0	Median	0.88206	1.0373	NaN	1	0	Median	1.2352	1.1554	NaN	1	1	Median	6.2756	6.5113	NaN	1	0	Median	783420000	349340000	434080000	242660000	98923000	143740000	230770000	138870000	91908000	192330000	88471000	103860000	117650000	23078000	94574000	58685	2540	55298	357266;357267;357268;357269	482249;482250;482251;482252;482253	482250			5	
YFNLASQGGHILAFYNLAQMHASGTGVMR	0	Unmodified	3153.5277	0.52767866	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									5	2	1	1	1	87.802	79.451	3;4	2.0746E-255	45668	160513_QHF_FH_JSI10Kac_6	317.19	304.41			1.0808	1.0028	22.172	5	0	Median	1.2189	1.034	17.899	2	0	Median	0.74337	0.87373	NaN	1	0	Median	1.5477	1.5064	NaN	1	0	Median	0.95139	1.0028	NaN	1	0	Median	882930000	361430000	521490000	566860000	204460000	362400000	171260000	85719000	85545000	97560000	48771000	48788000	47241000	22480000	24761000	58686	5258	55299	357270;357271;357272;357273;357274	482254;482255;482256;482257;482258;482259	482259			6	
YFNLASQGGHILAFYNLAQMHASGTGVMR	0	Oxidation (M)	3169.5226	0.52259328	5258	Q9UBV2	SEL1L	Protein sel-1 homolog 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			85.315	78.175	3;4	6.6954E-62	42547	160513_QHF_FH_JSI9Kac_6	189.24	178.63			0.99183	0.99568	31.393	2	1	Median	1.4512	1.2432	NaN	1	0	Median	0.6779	0.79747	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1176200000	907840000	268330000	54855000	26708000	28147000	1121300000	881130000	240180000	0	0	0	0	0	0	58687	5258	55299	357275;357276	482260;482261;482262	482260		2621	3	
YFNSYTLTGR	0	Unmodified	1220.5826	0.58258722	4128	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.49		4	4					1	4	4	3	3	3	47.534	43.288	2	6.6028E-11	38048	160511_QHF_FH_JSI9i_2	145.17	121.02			1.139	1.0866	13.871	13	0	Median	1.4275	1.1989	13.816	4	0	Median	0.86729	1.0565	16.531	3	0	Median	1.1166	1.0783	7.0833	3	0	Median	1.0795	1.1715	20.132	3	0	Median	2175300000	1111400000	1063800000	349140000	144870000	204270000	472060000	271390000	200670000	623340000	329640000	293700000	730720000	365540000	365170000	58688	4128	55300	357277;357278;357279;357280;357281;357282;357283;357284;357285;357286;357287;357288;357289	482263;482264;482265;482266;482267;482268;482269;482270;482271;482272;482273;482274;482275;482276;482277;482278	482270			16	
YFPEYAEK	1	Unmodified	1045.4757	0.47566253	4924	Q9NQR4	NIT2	Omega-amidase NIT2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.25	5.65	1	4	1					2		2	1	3	2	38.875	35.625	2	0.0016392	30469	160511_QHF_FH_JSI11i_2	86.794	69.408			0.91039	0.9497	19.542	8	0	Median	0.93156	0.78116	21.76	2	0	Median	0.816	1.0085	NaN	1	0	Median	1.0463	1.059	12.755	3	0	Median	0.75007	0.81524	3.9822	2	0	Median	984820000	485110000	499710000	188960000	103420000	85543000	183040000	99374000	83663000	415850000	180370000	235480000	196970000	101950000	95021000	58689	4924	55301	357290;357291;357292;357293;357294;357295;357296;357297	482279;482280;482281;482282;482283;482284;482285;482286;482287;482288;482289;482290;482291	482286			13	
YFPFMDLK	1	Unmodified	1059.5099	0.50993955	3734	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	86.712	86.191	2	0.0016392	76621	160511_QHF_FH_JSI10i_2	86.794	56.076			0.84738	0.84482	6.3983	5	0	Median	0.91925	0.79022	NaN	1	0	Median	0.73465	0.89317	NaN	1	0	Median	0.91106	0.88393	6.3994	2	0	Median	0.75432	0.81774	NaN	1	0	Median	164210000	83218000	80989000	20037000	10015000	10021000	36642000	20328000	16315000	74786000	37995000	36791000	32741000	14879000	17862000	58690	3734	55302	357298;357299;357300;357301;357302	482292;482293;482294;482295;482296;482297;482298;482299;482300;482301	482300			10	
YFPGFDWFFLDPITSSGIK	1	Unmodified	2236.0881	0.088093311	3509	Q8N2K0	ABHD12	Monoacylglycerol lipase ABHD12	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									4			2	2	100.36	90.925	2;3	6.8244E-86	50041	160513_QHF_FH_JSI12Kac_6	218.31	199.68			0.83488	0.84894	27.168	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7213	0.68086	17.68	2	0	Median	0.96156	1.0298	13.785	2	0	Median	244430000	130810000	113620000	0	0	0	0	0	0	87183000	49848000	37335000	157250000	80963000	76285000	58691	3509	55303	357303;357304;357305;357306	482302;482303;482304	482303			3	
YFPGHSK	1	Unmodified	834.40244	0.40243801	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							2	2	1	2	9.401	9.077	2;3	0.0030995	6740	160511_QHF_FH_JSI9i_3	67.981	51.054			1.0053	0.99046	4.7113	4	0	Median	1.1584	0.93243	NaN	1	0	Median	0.87417	1.0236	NaN	1	0	Median	1.0155	0.95873	NaN	1	0	Median	0.99515	1.0232	NaN	1	0	Median	1609400000	528930000	1080500000	531100000	102030000	429080000	373790000	123740000	250050000	192780000	112840000	79936000	511760000	190330000	321440000	58692	3159	55304	357307;357308;357309;357310;357311;357312;357313	482305;482306;482307;482308;482309;482310;482311;482312;482313;482314;482315	482312			11	
YFPGMFPFK	1	Unmodified	1132.5416	0.54157402	3749	Q8WTV0	SCARB1	Scavenger receptor class B member 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	86.419	83.467	2	0.00012089	76951	160511_QHF_FH_JSI11i_3	91.906	74.521			0.93128	0.8737	23.885	11	3	Median	0.93128	0.8032	7.5242	3	1	Median	0.65942	0.79442	13.454	2	0	Median	1.093	1.0421	25.628	3	1	Median	0.95725	1.0043	30.551	3	1	Median	1752500000	881480000	871020000	406320000	198060000	208260000	290050000	162130000	127930000	445900000	208260000	237640000	610210000	313020000	297190000	58693	3749	55305	357314;357315;357316;357317;357318;357319;357320;357321;357322;357323;357324;357325	482316;482317;482318;482319;482320;482321;482322;482323;482324;482325;482326;482327;482328;482329;482330;482331;482332;482333;482334;482335;482336;482337;482338;482339	482317			24	
YFPTQALNFAFK	1	Unmodified	1445.7343	0.73433683	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.36	2	7	8	1	2			1	9	8	6	8	8	91.373	87.422	2	7.7475E-23	82801	160511_QHF_FH_JSI10i_2	176.38	151.61			1.0358	0.91092	35.225	25	15	Median	1.262	1.0587	55.624	7	4	Median	0.77585	0.84535	18.198	6	5	Median	1.0802	1.042	14.828	5	2	Median	0.88512	0.89731	35.548	7	4	Median	170750000000	77400000000	93347000000	37372000000	15589000000	21783000000	37291000000	18623000000	18669000000	30466000000	13492000000	16974000000	65618000000	29696000000	35922000000	58694	1014;826;1013;4626	55306	357326;357327;357328;357329;357330;357331;357332;357333;357334;357335;357336;357337;357338;357339;357340;357341;357342;357343;357344;357345;357346;357347;357348;357349;357350;357351;357352;357353;357354;357355	482340;482341;482342;482343;482344;482345;482346;482347;482348;482349;482350;482351;482352;482353;482354;482355;482356;482357;482358;482359;482360;482361;482362;482363;482364;482365;482366;482367;482368;482369;482370;482371;482372;482373;482374;482375;482376;482377;482378;482379;482380;482381;482382;482383;482384;482385;482386;482387;482388;482389;482390;482391;482392;482393;482394;482395;482396;482397;482398;482399;482400	482385			61	
YFPTQALNFAFKDK	2	Unmodified	1688.8562	0.85624288	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	0	0	0	1		By MS/MS	By MS/MS		3	0			3								2	1		82.275	81.42	3	0.00020958	72657	160511_QHF_FH_JSI11i_3	90.229	77.847			0.56559	0.51661	26.858	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.68755	0.79055	15.362	2	2	Median	0.56559	0.51661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	183120000	104790000	78333000	0	0	0	112470000	61139000	51326000	70655000	43648000	27007000	0	0	0	58695	1014;826;1013;4626	55307	357356;357357;357358	482401;482402;482403	482401			3	
YFPTQALNFAFKDK	2	Acetyl (K)	1730.8668	0.86680757	826;1014;1013;4626	P12236;P05141;P12235;Q9H0C2	SLC25A6;SLC25A5;SLC25A4;SLC25A31	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									9	3	2	2	2	87.742	79.426	2;3	2.7122E-45	43649	160513_QHF_FH_JSI9Kac_6	196.57	156.65			0.68172	0.70116	135.97	9	2	Median	0.90668	0.76937	215.48	3	1	Median	0.17637	0.20731	186.32	2	1	Median	0.70493	0.67186	6.0371	2	0	Median	0.4863	0.51257	70.832	2	0	Median	2998000000	1820400000	1177600000	621400000	368500000	252890000	581080000	409340000	171740000	1177800000	658780000	519030000	617680000	383780000	233900000	58696	1014;826;1013;4626	55307	357359;357360;357361;357362;357363;357364;357365;357366;357367	482404;482405;482406;482407;482408;482409;482410;482411;482412;482413;482414	482407	480		11	
YFPYYGK	1	Unmodified	936.43815	0.43815481	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	3	3	2	2	47.267	42.828	2	0.01003	37840	160511_QHF_FH_JSI10i_2	76.592	65.523			0.88642	0.96697	7.4036	10	1	Median	1.2408	1.0412	0.58569	3	0	Plateau	0.77265	0.92273	3.8571	3	0	Median	0.94049	0.95714	4.0738	2	1	Median	0.8031	0.88291	10.603	2	0	Median	1911100000	908740000	1002300000	323700000	134330000	189370000	485280000	218780000	266510000	627340000	301240000	326100000	474750000	254390000	220350000	58697	1829	55308	357368;357369;357370;357371;357372;357373;357374;357375;357376;357377	482415;482416;482417;482418;482419;482420;482421;482422;482423;482424;482425;482426;482427;482428;482429;482430;482431	482427			17	
YFQFQEEGK	1	Unmodified	1174.5295	0.52948901	256	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	5	2	5	6					3		4	4	4	4	39.815	37.244	2	3.8499E-08	31926	160511_QHF_FH_JSI11i_2	146.81	141.44			1.1324	1.1455	43.16	16	7	Median	1.0501	0.86242	69.586	4	4	Median	0.85246	1.0205	27.854	4	0	Linear	1.1324	1.1237	27.029	4	1	Median	1.1228	1.2399	38.557	4	2	Median	1572200000	780120000	792050000	389570000	190420000	199150000	392480000	217610000	174870000	525230000	249880000	275350000	264890000	122200000	142680000	58698	256	55309	357378;357379;357380;357381;357382;357383;357384;357385;357386;357387;357388;357389;357390;357391;357392;357393	482432;482433;482434;482435;482436;482437;482438;482439;482440;482441;482442;482443;482444;482445;482446;482447;482448;482449;482450;482451;482452;482453	482445			22	
YFQHLLGK	1	Unmodified	1004.5444	0.54435122	5633	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.79	4.59		1	11						2	4	4	3	3	37.355	35.154	2;3	0.00060509	29554	160511_QHF_FH_JSI12i_3	85.212	56.063			7.6394	8.6108	248.53	12	12	Median	7.2398	5.9755	282.71	4	4	Median	1.1311	1.3446	285.65	4	4	Median	22.271	21.253	NaN	1	1	Median	5.0717	5.5744	249.77	3	3	Median	4299500000	1951000000	2348500000	1422700000	603160000	819570000	1055600000	593880000	461740000	529030000	33212000	495820000	1292100000	720760000	571340000	58699	5633	55310	357394;357395;357396;357397;357398;357399;357400;357401;357402;357403;357404;357405;357406;357407	482454;482455;482456;482457;482458;482459;482460;482461;482462;482463;482464;482465;482466;482467;482468;482469	482467			16	
YFQINQDEEEEEDED	0	Unmodified	1930.7228	0.72284126	1431	P35268	RPL22	60S ribosomal protein L22	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.62	9			1	2					4	3	2	3	50.707	47.913	2	4.4607E-40	43357	160511_QHF_FH_JSI10i_1	205.53	205.53			0.91985	0.99697	16.574	8	1	Median	1.3694	1.1173	NaN	1	0	Median	0.71839	0.7912	14.176	3	1	Median	1.164	1.1236	16.922	2	0	Median	0.91985	0.97911	7.3068	2	0	Median	1826300000	876220000	950060000	131520000	58885000	72636000	571840000	290070000	281770000	510540000	229220000	281320000	612380000	298050000	314330000	58700	1431	55311	357408;357409;357410;357411;357412;357413;357414;357415;357416;357417;357418;357419	482470;482471;482472;482473;482474;482475;482476;482477;482478;482479;482480;482481;482482;482483;482484;482485;482486;482487;482488;482489	482479			20	
YFQISQDEDESESED	0	Unmodified	1819.6908	0.69081285	3109	Q6P5R6	RPL22L1	60S ribosomal protein L22-like 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										1		2	47.042	46.499	2	2.6481E-06	41911	160511_QHF_FH_JSI10i_1	122.69	122.69			0.5238	0.59725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.5238	0.59725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33816000	26764000	7052200	0	0	0	21729000	14677000	7052200	0	0	0	12086000	12086000	0	58701	3109	55312	357420;357421;357422	482490;482491;482492	482492			3	
YFQSNAEPR	0	Unmodified	1110.5094	0.50942227	3774	Q8WV22	NSMCE1	Non-structural maintenance of chromosomes element 1 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		14.441	14.218	2	0.0014259	11262	160511_QHF_FH_JSI11i_2	77.674	67.206			0.56509	0.56482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56509	0.56482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	18448000	10020000	8427300	0	0	0	0	0	0	18448000	10020000	8427300	0	0	0	58702	3774	55313	357423	482493	482493			1	
YFQTYFLTPSVK	1	Unmodified	1492.7602	0.76021723	1463	P36915	GNL1	Guanine nucleotide-binding protein-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.44		6	4					2	4	4	5	4	3	79.372	75.073	2	1.0463E-61	38580	160513_QHF_FH_JSI9Kac_6	220.25	159.66			0.93671	0.94975	28.877	14	5	Median	1.0867	0.90666	20.325	4	1	Median	0.65755	0.76989	44.703	4	3	Median	0.89854	0.86903	11.051	3	1	Median	0.98478	1.0974	4.3428	3	0	Plateau	915140000	479900000	435240000	171780000	73757000	98023000	248070000	143780000	104280000	293550000	165360000	128190000	201750000	97003000	104740000	58703	1463	55314	357424;357425;357426;357427;357428;357429;357430;357431;357432;357433;357434;357435;357436;357437;357438;357439	482494;482495;482496;482497;482498;482499;482500;482501;482502;482503;482504;482505;482506;482507;482508;482509;482510;482511;482512;482513	482508			20	
YFSEADK	1	Unmodified	858.37595	0.37594848	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									1	2	2	11.947	11.606	2	0.017903	9544	160511_QHF_FH_JSI12i_1	60.76	43.833			1.0919	1.1578	75.554	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0919	1.2913	NaN	1	0	Median	1.7864	1.7652	59.645	2	1	Median	0.53596	0.57924	79.881	2	1	Median	1665200000	873690000	791550000	0	0	0	498940000	275540000	223400000	585860000	285010000	300850000	580430000	313140000	267300000	58704	1015	55315	357440;357441;357442;357443;357444	482514;482515;482516;482517	482515			4	
YFSEADKIK	2	Acetyl (K)	1141.5655	0.56554017	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	48.987	38.577	2	8.6489E-06	22711	160513_QHF_FH_JSI11Kac_4	127.3	96.73			0.30313	0.34423	158.91	4	3	Median	NaN	NaN	NaN	0	0	Median	0.14342	0.17202	NaN	1	1	Median	0.44583	0.44008	255.98	2	2	Median	0.64068	0.68883	NaN	1	0	Median	71918000	46452000	25466000	0	0	0	17257000	15048000	2209200	35675000	20972000	14704000	18986000	10432000	8553200	58705	1015	55316	357445;357446;357447;357448;357449	482518;482519;482520;482521;482522;482523	482520	822		6	
YFSERGDAVAK	1	Unmodified	1241.6041	0.60405094	5391	Q9UL46	PSME2	Proteasome activator complex subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	2	2	2	15.758	15.382	2;3	8.856E-05	12478	160511_QHF_FH_JSI10i_3	77.062	65.85			1.0231	1.2494	106.65	7	6	Median	2.6161	2.1027	NaN	1	1	Median	0.92061	1.1002	17.981	2	1	Median	0.91671	0.85186	170.12	2	2	Median	0.93098	0.94112	181.76	2	2	Median	1539000000	780820000	758200000	59111000	18505000	40606000	409510000	231070000	178440000	451460000	248420000	203040000	618940000	282830000	336120000	58706	5391	55317	357450;357451;357452;357453;357454;357455;357456	482524;482525;482526;482527;482528;482529;482530;482531	482527			8	
YFSERGDAVTK	1	Unmodified	1271.6146	0.61461563	2244	Q06323	PSME1	Proteasome activator complex subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							1	2	3	2	16.011	15.71	2;3	0.00020839	12987	160511_QHF_FH_JSI11i_3	127.42	106.55			0.69558	0.74229	82.016	8	5	Median	1.0892	0.93089	NaN	1	0	Median	0.79769	0.93453	6.743	2	0	Median	0.45268	0.42433	133.64	3	3	Median	0.42135	0.42703	52.363	2	2	Median	2149200000	934080000	1215200000	175540000	64290000	111250000	589450000	284790000	304660000	1062300000	382290000	680030000	321940000	202710000	119230000	58707	2244	55318	357457;357458;357459;357460;357461;357462;357463;357464	482532;482533;482534;482535;482536;482537;482538;482539;482540;482541;482542	482534			11	
YFSFPVFFFK	1	Unmodified	1327.6641	0.664132	3168	Q6XUX3	DSTYK	Dual serine/threonine and tyrosine protein kinase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	99.759	94.981	2	0.00056175	89119	160511_QHF_FH_JSI12i_3	82.279	67.612			1.2346	1.2656	6.9004	2	1	Median	NaN	NaN	NaN	0	0	Median	1.1881	1.3289	NaN	1	1	Median	1.2828	1.2054	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	168340000	77521000	90822000	0	0	0	21244000	11019000	10226000	147100000	66502000	80596000	0	0	0	58708	3168	55319	357465;357466;357467	482543;482544;482545	482545			3	
YFSGAHDGDVYPAWSQK	1	Unmodified	1926.8537	0.8536767	684	O95365	ZBTB7A	Zinc finger and BTB domain-containing protein 7A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	49.301	49.182	3	0.00015916	42045	160511_QHF_FH_JSI12i_3	74.428	68.788			1.6916	1.7116	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6916	1.7116	NaN	1	1	Median	46948000	9350700	37597000	0	0	0	0	0	0	17852000	0	17852000	29096000	9350700	19745000	58709	684	55320	357468;357469	482546;482547	482547			2	
YFSGPAITLENTR	0	Unmodified	1467.7358	0.73579339	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				60.57	59.598	2	0.0022046	52388	160511_QHF_FH_JSI9i_2	58.676	30.934			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58710	647	55321	357470	482548	482548			1	
YFSLPFCVGSK	1	Unmodified	1303.6271	0.62709457	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	84.53	83.827	2	1.4725E-07	74688	160511_QHF_FH_JSI11i_3	123.86	100.34			1.0386	1.0806	23.503	7	0	Median	1.2449	1.0478	NaN	1	0	Median	0.95769	1.136	7.066	2	0	Median	0.84002	0.81742	0.90113	2	0	Median	1.35	1.4029	16.877	2	0	Median	472960000	228350000	244610000	19114000	8373800	10740000	95962000	50455000	45507000	191700000	101860000	89842000	166190000	67664000	98521000	58711	4874	55322	357471;357472;357473;357474;357475;357476;357477	482549;482550;482551;482552;482553;482554;482555;482556;482557;482558;482559	482551			10	
YFSLPFCVGSKK	2	Unmodified	1431.7221	0.72205759	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			2								1	1		71.086	70.357	3	0.0039406	59130	160511_QHF_FH_JSI10i_3	49.929	44.025			0.98669	0.99898	16.313	2	1	Median	NaN	NaN	NaN	0	0	Median	0.9847	1.1211	NaN	1	1	Median	0.98868	0.89015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	81636000	42091000	39545000	0	0	0	34057000	15546000	18511000	47579000	26545000	21034000	0	0	0	58712	4874	55323	357478;357479	482560;482561	482561			2	
YFSSMAEFLK	1	Unmodified	1221.574	0.57399637	3803	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.664	75.379	2	0.0017807	65282	160511_QHF_FH_JSI12i_3	63.816	45.591			1.7455	1.7632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7455	1.7632	NaN	1	0	Median	55580000	24407000	31173000	0	0	0	0	0	0	0	0	0	55580000	24407000	31173000	58713	3803	55324	357480	482562	482562			1	
YFTCDEGHGIFVR	0	Unmodified	1599.714	0.71401209	2516	Q14203	DCTN1	Dynactin subunit 1	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	24.076	23.014	3	0.048779	19008	160511_QHF_FH_JSI12i_2	14.353	7.3139			1.1746	1.3776	19.554	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2729	1.5819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0839	1.1997	NaN	1	0	Median	400160000	127980000	272180000	0	0	0	27904000	11856000	16047000	0	0	0	372260000	116120000	256130000	58714	2516	55325	357481;357482	482563	482563			1	
YFTDAGLK	1	Unmodified	913.45453	0.45453316	5722	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.632	1	3	1							1	1	2	1	32.379	31.517	2	0.0025205	26708	160511_QHF_FH_JSI11i_2	79.469	41.823			0.85105	0.75398	69.636	5	4	Median	0.91303	0.75398	NaN	1	1	Median	0.53617	0.65286	NaN	1	1	Median	1.3444	1.3428	60.711	2	1	Median	0.27121	0.29428	NaN	1	1	Median	1200700000	669500000	531250000	75537000	40775000	34762000	263620000	146480000	117140000	620300000	313960000	306340000	241290000	168280000	73015000	58715	5722	55326	357483;357484;357485;357486;357487	482564;482565;482566;482567;482568	482567			5	
YFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIR	0	Unmodified	4222.1085	0.10851776	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0		By MS/MS			16	0									1		1			100.73	95.008	4	1.7397E-55	55982	160513_QHF_FH_JSI10Kac_6	191.34	177.7			0.80074	0.94423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.80074	0.94423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	361570000	291950000	69621000	0	0	0	361570000	291950000	69621000	0	0	0	0	0	0	58716	2014;2065	55327	357488	482569	482569			1	
YFTEAGLK	1	Unmodified	927.47018	0.47018322	3218	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.64	5.14		7	2					1	1	4	4	2	1	33.284	31.403	2	0.0021269	27515	160511_QHF_FH_JSI10i_2	91.626	60.337			0.42565	0.40226	114.11	10	10	Median	1.3739	1.1625	123.58	3	3	Plateau	0.58661	0.70037	111.45	4	4	Median	1.2786	1.3352	192.88	2	2	Median	0.31436	0.3533	NaN	1	1	Median	5060100000	2581400000	2478800000	1071500000	494300000	577170000	1433100000	850950000	582190000	2069000000	902040000	1167000000	486490000	334080000	152410000	58717	3218	55328	357489;357490;357491;357492;357493;357494;357495;357496;357497;357498;357499	482570;482571;482572;482573;482574;482575;482576;482577;482578;482579;482580;482581	482579			12	
YFTHVMINK	1	Unmodified	1151.5798	0.57975045	4219	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			42.324	33.706	3	0.022141	18732	160513_QHF_FH_JSI10Kac_6	36.381	29.45			0.4156	0.49331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.4156	0.49331	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3775100	2721900	1053200	0	0	0	3775100	2721900	1053200	0	0	0	0	0	0	58718	4219	55329	357500	482582	482582			1	
YFTLGLPTGSTPLGCYK	1	Unmodified	1873.9284	0.92842155	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	1	3	2	92.468	91.989	2	2.2693E-10	80753	160511_QHF_FH_JSI11i_2	142.83	121.07			0.85342	0.8899	24.525	6	5	Median	NaN	NaN	NaN	0	0	Median	0.60556	0.74031	NaN	1	0	Median	0.9072	0.90428	31.979	3	3	Median	0.92557	0.998	18.48	2	2	Median	181750000	99386000	82368000	0	0	0	32234000	17472000	14762000	91805000	47919000	43887000	57715000	33995000	23719000	58719	1596;3725	55330	357501;357502;357503;357504;357505;357506;357507	482583;482584;482585;482586;482587;482588;482589;482590;482591	482587			9	
YFTLGLPTGSTPLGCYKK	2	Unmodified	2002.0234	0.023384564	1596;3725	P46926;Q8TDQ7	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	no	no	0	0	0	1	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	80.785	80.059	3	0.0067069	71399	160511_QHF_FH_JSI11i_3	50.966	44.55			0.72509	0.67785	25.219	4	1	Median	0.96539	0.7895	NaN	1	0	Median	0.44929	0.50706	NaN	1	0	Median	0.62287	0.582	NaN	1	0	Median	0.84409	0.86691	NaN	1	1	Median	111410000	67627000	43783000	18613000	8577000	10035000	31464000	22746000	8718300	35614000	22763000	12851000	25720000	13541000	12179000	58720	1596;3725	55331	357508;357509;357510;357511	482592;482593;482594	482592			2	
YFTWDEVAQR	0	Unmodified	1313.6041	0.60405094	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	60.201	59.401	2	0.00031818	51490	160511_QHF_FH_JSI11i_2	78.264	66.217			1.1178	2.0922	33.523	4	2	Linear	NaN	NaN	NaN	0	0	Median	0.85758	1.0369	NaN	1	1	Median	1.5427	1.5774	45.828	2	1	Median	1.1022	1.2236	NaN	1	0	Median	274950000	106950000	168010000	0	0	0	53539000	25416000	28124000	175130000	60052000	115080000	46286000	21479000	24808000	58721	415	55332	357512;357513;357514;357515;357516	482595;482596;482597;482598;482599	482597			5	
YFTWDPSRFPQPR	0	Unmodified	1695.8158	0.81577505	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			74.627	68.117	3	0.0017605	37092	160513_QHF_FH_JSI10Kac_6	66.498	56.172			0.6659	0.79023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.6659	0.79023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18082000	11298000	6783800	0	0	0	18082000	11298000	6783800	0	0	0	0	0	0	58722	2569	55333	357517	482600	482600			1	
YFVEAGAMAVR	0	Unmodified	1212.5961	0.59612879	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.68	6.6	3	4	4				1	3	4	4	6	5	4	56.695	52.021	2	1.2276E-47	46041	160511_QHF_FH_JSI10i_2	214.12	182.83			1.0538	1.0304	16.295	19	2	Median	1.2943	1.0899	19.209	4	0	Median	0.79662	0.94769	14.563	6	2	Median	1.2333	1.1321	10.597	5	0	Median	0.90448	0.97008	8.0594	4	0	Median	7037000000	3464700000	3572200000	1441500000	675120000	766350000	1674700000	998790000	675870000	2109600000	968050000	1141600000	1811200000	822770000	988450000	58723	1132	55334	357518;357519;357520;357521;357522;357523;357524;357525;357526;357527;357528;357529;357530;357531;357532;357533;357534;357535;357536	482601;482602;482603;482604;482605;482606;482607;482608;482609;482610;482611;482612;482613;482614;482615;482616;482617;482618;482619;482620;482621;482622;482623;482624;482625;482626;482627;482628;482629;482630	482619			30	
YFVEAGAMAVR	0	Oxidation (M)	1228.591	0.59104341	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.62		4						3	3	2	3	2	3	43.896	37.647	2	2.7676E-08	20295	160513_QHF_FH_JSI9Kac_5	118.5	98.708			0.98291	1.0652	14.658	10	3	Median	1.2376	1.051	13.828	2	0	Median	1.0337	1.2475	16.824	3	1	Plateau	1.0399	1.0392	28.952	2	1	Median	0.90123	1.0142	12.482	3	1	Median	579370000	281160000	298210000	110420000	50832000	59586000	163640000	86857000	76779000	154730000	71838000	82896000	150580000	71632000	78948000	58724	1132	55334	357537;357538;357539;357540;357541;357542;357543;357544;357545;357546	482631;482632;482633;482634;482635;482636;482637;482638;482639;482640;482641;482642;482643;482644;482645	482634		761	15	
YFVISNTTGYNDR	0	Unmodified	1548.7209	0.72087161	1652	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.4		4	3					6	4	4	4	6	3	56.023	50.007	2	4.2566E-12	27415	160513_QHF_FH_JSI10Kac_6	123.63	102.76			1.2472	1.2125	21.678	14	4	Median	1.1648	1.0006	18.605	3	1	Plateau	0.979	1.1797	32.811	4	2	Median	1.4162	1.3298	21.34	4	1	Median	1.0582	1.1457	18.82	3	0	Median	404680000	185370000	219320000	68661000	29340000	39321000	100380000	53643000	46740000	111260000	50680000	60584000	124380000	51703000	72674000	58725	1652	55335	357547;357548;357549;357550;357551;357552;357553;357554;357555;357556;357557;357558;357559;357560;357561;357562;357563	482646;482647;482648;482649;482650;482651;482652;482653;482654;482655;482656;482657;482658;482659;482660;482661;482662;482663;482664;482665;482666;482667;482668;482669;482670	482670			25	
YFVLYKPPPK	2	Unmodified	1250.7063	0.70633117	4660	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	47.874	47.633	3	0.0025133	39292	160511_QHF_FH_JSI9i_3	54.066	47.772			0.88148	0.88646	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88148	0.88646	NaN	1	0	Median	54849000	34000000	20850000	0	0	0	0	0	0	0	0	0	54849000	34000000	20850000	58726	4660	55336	357564;357565;357566	482671;482672;482673	482672			3	
YFVQGMGYMPSASMTR	0	Oxidation (M)	1840.7946	0.79464696	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.13	5.45		7	5						3	3	6	2	4	62.441	59.852	2	3.4266E-05	53304	160511_QHF_FH_JSI12i_3	112.13	110.75			1.1606	1.1219	34.268	11	3	Median	1.4747	1.2354	31.583	2	1	Median	0.8813	1.0572	51.141	4	2	Median	1.1754	1.123	0.13264	2	0	Median	1.2209	1.2193	23.253	3	0	Median	275460000	142270000	133180000	27989000	12111000	15879000	91533000	52793000	38740000	55025000	28651000	26374000	100910000	48717000	52192000	58727	3851	55337	357567;357568;357569;357570;357571;357572;357573;357574;357575;357576;357577;357578;357579;357580;357581	482674;482675;482676;482677;482678;482679;482680;482681;482682;482683;482684;482685;482686;482687;482688;482689;482690;482691;482692	482688		2302;2303;2304	19	
YFVQGMGYMPSASMTR	0	Unmodified	1824.7997	0.79973233	3851	Q92597	NDRG1	Protein NDRG1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.37	1	7	5						3	4	4	4	4	71.775	69.607	2;3	4.6781E-75	37464	160513_QHF_FH_JSI10Kac_6	227.57	217.92			1.0979	1.0463	14.7	16	0	Median	1.2947	1.0885	17.983	4	0	Median	0.80945	0.99435	14.513	4	0	Median	1.1835	1.1366	16.753	4	0	Median	0.99566	1.0526	12.787	4	0	Median	2012400000	1021100000	991390000	392030000	166680000	225350000	441730000	260000000	181740000	681870000	341880000	339990000	496810000	252500000	244310000	58728	3851	55337	357582;357583;357584;357585;357586;357587;357588;357589;357590;357591;357592;357593;357594;357595;357596;357597	482693;482694;482695;482696;482697;482698;482699;482700;482701;482702;482703;482704;482705;482706;482707;482708;482709;482710;482711;482712;482713;482714;482715;482716;482717;482718;482719	482719			27	
YFVSNIYLSPR	0	Unmodified	1357.703	0.7030367	5736	Q9Y6M0	PRSS21	Testisin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.86		4	1						4	2	2	3	2	70.629	66.369	2	1.2301E-26	36318	160513_QHF_FH_JSI10Kac_6	175.65	143.33			1.3634	1.3539	26.819	9	0	Median	1.2483	1.0704	12.082	2	0	Median	0.91639	1.1019	35.581	2	0	Median	1.6298	1.513	19.943	3	0	Median	1.1415	1.2452	31.039	2	0	Median	801320000	351130000	450180000	143930000	57251000	86676000	244030000	127910000	116130000	271560000	103110000	168450000	141790000	62865000	78929000	58729	5736	55338	357598;357599;357600;357601;357602;357603;357604;357605;357606	482720;482721;482722;482723;482724;482725;482726;482727;482728;482729	482729			10	
YFVTFPYPYMNGR	0	Unmodified	1653.765	0.76498503	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		4	4						5	3	3	3	4	87.006	83.366	2	7.5082E-32	43335	160513_QHF_FH_JSI10Kac_6	182.76	168.07			1.0334	1.0383	17.437	13	3	Median	1.3204	1.1273	20.693	3	0	Median	0.85338	1.0295	24.979	3	0	Median	1.0334	0.97428	17.755	3	1	Median	0.95747	1.0474	13.555	4	2	Median	1373400000	720120000	653240000	249580000	123570000	126010000	426260000	234400000	191860000	323990000	163410000	160590000	373530000	198750000	174780000	58730	5215	55339	357607;357608;357609;357610;357611;357612;357613;357614;357615;357616;357617;357618;357619	482730;482731;482732;482733;482734;482735;482736;482737;482738;482739;482740;482741;482742;482743;482744;482745;482746	482746			13	
YFVTFPYPYMNGR	0	Oxidation (M)	1669.7599	0.75989966	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	80.965	71.835	2	8.2787E-20	38023	160513_QHF_FH_JSI12Kac_6	150.35	140.35			0.99315	1.0756	20.751	3	0	Plateau	1.8309	1.587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.174	1.1526	NaN	1	0	Median	0.99315	1.0756	NaN	1	0	Median	137650000	66430000	71217000	34637000	14039000	20598000	0	0	0	44269000	20770000	23498000	58741000	31621000	27121000	58731	5215	55339	357620;357621;357622	482747;482748;482749;482750;482751	482751		2607	5	
YFYFYNTGLQNQR	0	Unmodified	1712.7947	0.79470526	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	75.148	67.07	2;3	1.4129E-32	35598	160513_QHF_FH_JSI9Kac_6	188.04	141.15			1.4874	1.4644	59.037	5	0	Median	2.023	1.7476	NaN	1	0	Median	0.56909	0.66454	12.788	2	0	Median	1.4874	1.4644	NaN	1	0	Median	2.2136	2.4342	NaN	1	0	Median	144580000	75881000	68696000	27557000	11289000	16268000	79202000	48996000	30206000	24345000	11014000	13331000	13473000	4581200	8891800	58732	1615	55340	357623;357624;357625;357626;357627	482752;482753;482754;482755;482756;482757;482758;482759;482760;482761	482754			10	
YFYLLENLAWVK	1	Unmodified	1557.8232	0.82315184	2789	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	3	3	2	2	96.15	87.945	2	2.3885E-39	47619	160513_QHF_FH_JSI12Kac_6	216.87	0			0.6672	0.67602	93.818	10	7	Median	0.74742	0.65056	84.722	3	3	Median	0.59558	0.70249	169.48	3	2	Median	0.80037	0.76922	43.076	2	2	Median	0.76539	0.81519	51.083	2	0	Median	1085000000	589780000	495210000	275590000	133090000	142500000	338980000	187110000	151870000	199880000	129490000	70395000	270540000	140090000	130450000	58733	2789	55341	357628;357629;357630;357631;357632;357633;357634;357635;357636;357637	482762;482763;482764;482765;482766;482767;482768;482769;482770;482771;482772;482773	482769			12	
YFYVSAEQVVQGMK	1	Unmodified	1647.7967	0.79667909	741	O95881	TXNDC12	Thioredoxin domain-containing protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6	6.04		7	4						4	5	4	4	2	79.717	76.831	2;3	1.4149E-114	40433	160513_QHF_FH_JSI10Kac_6	272.03	236.08			0.93295	0.9137	22.233	14	7	Median	1.0513	0.9137	14.594	4	2	Median	0.64186	0.76089	27.768	4	3	Median	0.89547	0.8985	29.762	4	2	Median	0.93295	1.026	3.0166	2	0	Median	968890000	517410000	451480000	186950000	92989000	93964000	317120000	185580000	131540000	292800000	142800000	149990000	172020000	96037000	75983000	58734	741	55342	357638;357639;357640;357641;357642;357643;357644;357645;357646;357647;357648;357649;357650;357651;357652	482774;482775;482776;482777;482778;482779;482780;482781;482782;482783;482784;482785;482786;482787;482788;482789;482790;482791;482792;482793;482794;482795;482796;482797	482797			24	
YGAAEPHTIAAFLGGAAAQEVIK	1	Unmodified	2284.1852	0.18518159	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	2	2	91.737	91.377	3;4	3.0899E-30	78917	160511_QHF_FH_JSI12i_3	171.06	163.24			0.91156	0.92795	39.599	5	3	Median	NaN	NaN	NaN	0	0	Median	0.91156	1.1156	NaN	1	0	Median	0.69049	0.68056	57.789	2	2	Median	0.67936	0.72723	34.47	2	1	Median	549090000	298980000	250110000	0	0	0	20201000	12099000	8102600	261280000	130950000	130330000	267610000	155930000	111680000	58735	2442	55343	357653;357654;357655;357656;357657	482798;482799;482800;482801;482802;482803;482804	482803			7	
YGAAMALGICCAGTGNK	1	Unmodified	1713.7637	0.76368118	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.866	56.359	2	0.00055347	48830	160511_QHF_FH_JSI11i_2	66.262	52.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58736	4272	55344	357658	482805	482805			1	
YGAATANYMEVVSLLK	1	Unmodified	1728.8757	0.87565769	1558	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		6							3	2	3	2	2	96.451	92.946	2;3	6.1803E-63	45308	160513_QHF_FH_JSI11Kac_6	209.21	179.47			0.47275	0.57999	46.106	8	4	Median	0.90776	0.77796	NaN	1	0	Median	0.51739	0.64559	16.541	3	2	Median	0.52206	0.52784	50.502	2	1	Median	0.27509	0.29949	55.617	2	1	Median	886820000	660410000	226410000	54164000	22265000	31898000	243040000	182660000	60372000	352260000	263120000	89138000	237360000	192360000	44997000	58737	1558	55345	357659;357660;357661;357662;357663;357664;357665;357666;357667	482806;482807;482808;482809;482810;482811;482812;482813	482807			8	
YGADALR	0	Unmodified	764.3817	0.38170256	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								2	1	2	1	16.492	15.835	2	0.010159	12841	160511_QHF_FH_JSI12i_2	76.035	29.268			0.88219	0.94974	21.282	6	0	Median	0.91685	0.76275	29.085	2	0	Median	0.77514	0.96275	NaN	1	0	Median	1.0188	1.0086	0.6651	2	0	Median	0.6245	0.68822	NaN	1	0	Median	1002600000	511120000	491430000	226830000	100520000	126300000	167820000	84310000	83512000	428690000	229580000	199110000	179220000	96714000	82509000	58738	1520	55346	357668;357669;357670;357671;357672;357673	482814;482815;482816;482817;482818	482815			5	
YGAFEVTEDTEK	1	Unmodified	1387.6143	0.61434085	4564	Q9BZH6	WDR11	WD repeat-containing protein 11	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	43.973	43.465	2	0.00028971	39228	160511_QHF_FH_JSI11i_1	74.841	66.309			0.96858	0.96956	19.883	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1497	1.1159	NaN	1	0	Median	0.81599	0.84239	NaN	1	1	Median	77630000	38262000	39368000	0	0	0	0	0	0	42649000	19118000	23531000	34981000	19144000	15837000	58739	4564	55347	357674;357675	482819;482820;482821	482819			3	
YGAFGLPITVAHVDGQTHMLFGSDR	0	Unmodified	2688.3119	0.31185545	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	1	1	1	3	95.119	93.658	3;4	1.7065E-16	85883	160511_QHF_FH_JSI11i_3	113.54	110.85			0.78752	0.77989	31.451	6	3	Median	0.95031	0.81226	NaN	1	1	Median	0.82947	0.9458	NaN	1	1	Median	1.2779	1.1704	NaN	1	0	Median	0.74769	0.74882	22.559	3	1	Plateau	414630000	225390000	189240000	154660000	75522000	79137000	14295000	5643200	8652200	69889000	36183000	33706000	175780000	108040000	67742000	58740	5526	55348	357676;357677;357678;357679;357680;357681	482822;482823;482824;482825;482826;482827;482828;482829;482830	482823			9	
YGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEK	1	Unmodified	3922.9862	0.98623456	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			96.048	88.655	5	5.1154E-116	52019	160513_QHF_FH_JSI10Kac_6	223.71	209.97			0.91866	0.92599	22.444	2	0	Median	1.2658	1.0852	NaN	1	0	Median	0.66672	0.7901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	481860000	271590000	210280000	88131000	38876000	49255000	393730000	232710000	161020000	0	0	0	0	0	0	58741	5526	55349	357682;357683	482831;482832;482833	482833			3	
YGAHNYHPLPVALER	0	Unmodified	1735.8794	0.87943794	808	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				50.26	48.656	3	0.001208	39890	160511_QHF_FH_JSI9i_3	55.213	38.547			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58742	808	55350	357684	482834	482834			1	
YGAIRDIDLK	1	Unmodified	1162.6346	0.63462279	2260	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	yes	yes	0	0	0	1		By MS/MS			3	0			2								2			43.554	42.02	2;3	0.056967	34991	160511_QHF_FH_JSI10i_3	50.04	21.866			0.92197	1.0725	14.581	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92197	1.0725	14.581	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	256470000	104160000	152310000	0	0	0	256470000	104160000	152310000	0	0	0	0	0	0	58743	2260	55351	357685;357686	482835;482836	482835			2	
YGALVFMDECHATGFLGPTGR	0	Unmodified	2298.0562	0.056158031	546	O75600	GCAT	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	16	0									4	2		1	1	92.311	83.218	4	0.051541	46828	160513_QHF_FH_JSI9Kac_6	14.015	10.212			0.95811	0.81339	18.269	4	0	Median	0.95811	0.81339	2.8833	2	0	Median	NaN	NaN	NaN	0	0	Median	1.166	1.1215	NaN	1	0	Median	0.70213	0.73995	NaN	1	0	Median	1770300000	813640000	956660000	1449100000	675990000	773070000	0	0	0	268750000	108960000	159780000	52497000	28687000	23809000	58744	546	55352	357687;357688;357689;357690	482837;482838	482838			2	
YGALVICETSEQK	1	Unmodified	1496.7181	0.71809442	1568	P43897	TSFM	Elongation factor Ts, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.5	0.5	1	1									1	1		47.377	46.907	2	0.00076363	40431	160511_QHF_FH_JSI11i_2	80.763	61.002			0.81858	0.868	55.683	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0994	1.2868	NaN	1	1	Median	0.60951	0.5855	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	53260000	33166000	20095000	0	0	0	36057000	19445000	16612000	17203000	13720000	3483000	0	0	0	58745	1568	55353	357691;357692	482839;482840	482840			2	
YGALVNNFAAWDHVSAK	1	Unmodified	1861.9111	0.911132	4006	Q96CB9	NSUN4	5-methylcytosine rRNA methyltransferase NSUN4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	73.262	72.91	3	9.8063E-07	63172	160511_QHF_FH_JSI12i_3	111.78	102.49			0.95967	0.8085	21.512	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.95967	1.2085	NaN	1	0	Median	1.1574	1.0418	NaN	1	0	Median	0.77201	0.79092	NaN	1	0	Median	160060000	91652000	68403000	0	0	0	41209000	21169000	20039000	52426000	30810000	21617000	66420000	39673000	26747000	58746	4006	55354	357693;357694;357695	482841;482842;482843;482844;482845;482846;482847	482846			7	
YGAPEDWELK	1	Unmodified	1206.5557	0.55570376	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	53.729	53.065	2	0.00059875	48225	160511_QHF_FH_JSI12i_1	70.908	59.757			0.79499	0.83859	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79499	0.83859	NaN	1	0	Median	61736000	29620000	32116000	0	0	0	0	0	0	0	0	0	61736000	29620000	32116000	58747	2712	55355	357696	482848	482848			1	
YGASLLHTYAGPSLLVLGPR	0	Unmodified	2084.1419	0.14186022	3858	Q92614	MYO18A	Unconventional myosin-XVIIIa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	85.242	76.992	3	1.0307E-25	42464	160513_QHF_FH_JSI11Kac_6	149.36	132.28			1.0305	1.0861	30.174	4	0	Median	1.5953	1.3738	NaN	1	0	Median	0.96533	1.1378	NaN	1	0	Median	1.1	1.0368	NaN	1	0	Median	0.6423	0.67351	NaN	1	0	Median	569160000	263550000	305620000	110920000	32545000	78376000	246360000	131190000	115170000	163720000	72003000	91713000	48170000	27813000	20358000	58748	3858	55356	357697;357698;357699;357700	482849;482850;482851;482852	482849			3	
YGAVDPLLALLAVPDMSSLACGYLR	0	Unmodified	2664.3655	0.3655305	1766	P52292	KPNA2	Importin subunit alpha-1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		103.8	103.71	3	3.3613E-08	91464	160511_QHF_FH_JSI11i_2	74.222	70.694			1.492	1.5217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.492	1.5217	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57471000	15047000	42424000	0	0	0	0	0	0	57471000	15047000	42424000	0	0	0	58749	1766	55357	357701	482853	482853			1	
YGCLAGVR	0	Unmodified	894.43817	0.43817159	5200	Q9P258	RCC2	Protein RCC2	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	25.262	24.627	2	0.010783	20525	160511_QHF_FH_JSI12i_2	54.787	44.48			0.98555	1.0499	65.899	4	0	Median	NaN	NaN	NaN	0	0	Median	0.27671	0.33789	NaN	1	0	Median	1.0458	1.0731	NaN	1	0	Median	1.1851	1.2635	29.293	2	0	Median	437250000	261120000	176130000	0	0	0	83812000	58986000	24826000	187410000	114420000	72985000	166030000	87710000	78323000	58750	5200	55358	357702;357703;357704;357705	482854;482855	482854			2	
YGDFFIR	0	Unmodified	916.4443	0.44430282	5494	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	58.821	57.88	2	0.013047	50308	160511_QHF_FH_JSI11i_2	68.422	33.614			1.0722	1.0631	31.531	3	0	Median	1.5425	1.3148	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0722	1.0631	NaN	1	0	Median	0.62799	0.70699	NaN	1	0	Median	458550000	271720000	186830000	95978000	36260000	59718000	0	0	0	212380000	138660000	73716000	150200000	96801000	53397000	58751	5494	55359	357706;357707;357708	482856	482856			1	
YGDFNKEVHK	2	Acetyl (K)	1277.6041	0.60405094	1270	P26038	MSN	Moesin	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.8	0.4							1	4			3	2		38.965	29.118	2;3	8.7999E-09	16692	160513_QHF_FH_JSI11Kac_5	134.13	36.396			0.74676	0.8775	81.216	5	0	Median	NaN	NaN	NaN	0	0	Median	1.035	1.2394	23.919	3	0	Median	0.27241	0.26915	2.9497	2	0	Median	NaN	NaN	NaN	0	0	Median	145460000	99688000	45767000	0	0	0	24275000	11893000	12382000	121180000	87795000	33386000	0	0	0	58752	1270	55360	357709;357710;357711;357712;357713	482857;482858;482859	482857	1173;1178		3	
YGDFRADDADEFGYSR	0	Unmodified	1882.7758	0.77582031	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	52.09	51.972	3	0.0073884	44431	160511_QHF_FH_JSI12i_3	41.988	37.597			0.8971	0.87429	31.223	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1896	1.0903	NaN	1	0	Median	0.67651	0.70109	NaN	1	0	Median	230670000	132510000	98159000	0	0	0	0	0	0	47129000	23005000	24124000	183540000	109510000	74035000	58753	3213	55361	357714;357715	482860;482861	482861			2	
YGDGGSTFQSTTGHCVHMR	0	Unmodified	2096.8793	0.8792563	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS			5.6	5.2			4						1	1	4			31.856	29.057	3;4	1.0214E-05	24300	160511_QHF_FH_JSI10i_3	79.97	79.483			1.0377	1.1956	29.229	5	1	Median	2.7005	2.2464	NaN	1	1	Median	1.0227	1.1792	2.7279	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	114310000	51709000	62599000	16335000	3368100	12967000	97973000	48341000	49632000	0	0	0	0	0	0	58754	1383	55362	357716;357717;357718;357719;357720	482862;482863;482864;482865;482866;482867	482863			6	
YGDGIQLTR	0	Unmodified	1021.5193	0.51925868	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	34.162	33.442	2	0.00019108	29259	160511_QHF_FH_JSI10i_2	85.744	63.613			0.97342	0.96508	42.207	6	1	Median	1.1914	1.0178	NaN	1	0	Median	1.263	1.4946	71.349	2	1	Median	0.83573	0.8267	14.359	2	0	Median	1.0489	1.172	NaN	1	0	Median	971140000	437420000	533720000	152470000	72842000	79632000	424500000	160790000	263710000	286010000	157540000	128470000	108160000	46251000	61911000	58755	1085	55363	357721;357722;357723;357724;357725;357726	482868;482869;482870;482871;482872;482873	482873			6	
YGDGPRPPK	1	Unmodified	985.49813	0.49812931	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.707	1	2	5							1	2	2	3	10.395	10.156	2;3	0.0029406	7640	160511_QHF_FH_JSI11i_3	46.001	38.873			0.78303	0.73513	46.58	8	0	Median	0.68437	0.58282	NaN	1	0	Median	0.63552	0.74901	56.402	2	0	Median	1.2475	1.1665	0.70472	2	0	Median	0.54998	0.56519	50.255	3	0	Median	2227800000	1193900000	1033900000	196550000	116690000	79864000	716260000	399090000	317170000	954520000	417710000	536810000	360470000	260430000	100050000	58756	2265	55364	357727;357728;357729;357730;357731;357732;357733;357734	482874;482875;482876;482877;482878;482879;482880;482881;482882;482883;482884	482875			11	
YGDLANWMIPGK	1	Unmodified	1363.6595	0.65945733	1865	P55809;Q9BYC2	OXCT1;OXCT2	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial;Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.56	4.45	2	4	2						1	1	2	5	1	80.822	79.215	2	1.1183E-10	70239	160511_QHF_FH_JSI11i_2	143.96	133.44			1.0638	1.1536	37.322	9	6	Median	1.5495	1.3369	NaN	1	1	Median	1.0883	1.2687	8.9548	2	1	Median	0.95585	0.93261	47.523	5	4	Median	0.90003	1.0126	NaN	1	0	Median	1767300000	805440000	961850000	289850000	122860000	166990000	290980000	141850000	149120000	901210000	404970000	496240000	285250000	135750000	149490000	58757	1865	55365	357735;357736;357737;357738;357739;357740;357741;357742;357743	482885;482886;482887;482888;482889;482890;482891;482892;482893;482894;482895;482896	482893			12	
YGDLANWMIPGKMVK	2	Acetyl (K)	1763.8739	0.87388356	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		2	1	89.052	79.679	2;3	3.3211E-74	44519	160513_QHF_FH_JSI11Kac_6	224.82	182.26			0.78581	0.75663	15.671	3	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83226	0.80181	8.2019	2	1	Median	0.58108	0.6231	NaN	1	0	Median	194890000	95931000	98960000	0	0	0	0	0	0	151940000	67473000	84469000	42948000	28457000	14491000	58758	1865	55366	357744;357745;357746;357747	482897;482898;482899;482900;482901;482902	482898	1879;1881		6	
YGDLLPADGILIQGNDLK	1	Unmodified	1914.0098	0.0098429899	1168;1239	P23634;P20020	ATP2B4;ATP2B1	Plasma membrane calcium-transporting ATPase 4;Plasma membrane calcium-transporting ATPase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	10	2								4	4	2	2	94.25	93.914	2;3	3.6582E-11	84970	160511_QHF_FH_JSI10i_1	138.42	64.955			0.86063	0.81713	25.325	12	6	Median	0.90024	0.78085	33.955	4	3	Median	0.74326	0.88085	17.881	4	3	Median	1.1074	1.062	10.307	2	0	Median	0.718	0.72717	16.341	2	0	Median	351220000	179210000	172010000	67821000	35485000	32336000	156020000	76372000	79649000	68955000	33276000	35679000	58426000	34078000	24349000	58759	1239;1168	55367	357748;357749;357750;357751;357752;357753;357754;357755;357756;357757;357758;357759	482903;482904;482905;482906;482907;482908;482909;482910;482911;482912;482913;482914;482915;482916;482917;482918;482919;482920	482914			18	
YGDLYQASFDADSATLR	0	Unmodified	1891.8588	0.85882166	5033	Q9NVH2	INTS7	Integrator complex subunit 7	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		69.005	68.618	2	0.00045479	62376	160511_QHF_FH_JSI11i_1	67.997	43.144			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58760	5033	55368	357760	482921	482921			1	
YGDSEFTVQSTTGHCVHMR	0	Unmodified	2210.9473	0.94733586	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2							1	1	1	1	39.634	39.086	3;4	3.3139E-11	33795	160511_QHF_FH_JSI11i_3	135.28	135.13			0.83863	1.0261	19.679	4	0	Linear	1.1415	1.0009	NaN	1	0	Median	0.90731	1.1022	NaN	1	0	Median	0.79248	0.71461	NaN	1	0	Median	1.0083	1.0519	NaN	1	0	Median	151250000	83874000	67378000	17329000	7086500	10243000	43420000	24619000	18801000	52332000	31249000	21083000	38171000	20920000	17251000	58761	1775	55369	357761;357762;357763;357764	482922;482923;482924;482925	482922			3	
YGDSGEQIAGFVK	1	Unmodified	1369.6514	0.65139506	975	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	2	1	1	53.604	52.713	2	0.00012929	47556	160511_QHF_FH_JSI10i_1	142.1	134.45			0.8158	0.74549	32.577	6	4	Median	1.0732	0.9103	24.728	2	1	Median	0.73145	0.87692	28.554	2	1	Median	0.7538	0.72718	NaN	1	1	Median	0.42196	0.44738	NaN	1	1	Median	1471400000	915590000	555840000	384580000	223640000	160930000	553520000	362000000	191520000	509960000	314520000	195450000	23369000	15436000	7932800	58762	975	55370	357765;357766;357767;357768;357769;357770	482926;482927;482928;482929;482930;482931;482932	482928			7	
YGEAGEGPGWGGAHPR	0	Unmodified	1596.707	0.70695288	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.65	0.478		6	11							1	8	4	4	27.435	26.899	2;3	1.9317E-11	22507	160511_QHF_FH_JSI11i_3	124.09	117.37			0.88972	1.0253	25.439	14	5	Median	1.5262	1.2893	NaN	1	0	Median	0.82071	0.99234	11.949	6	2	Median	1.1565	1.0697	21.454	4	1	Median	0.7616	0.78286	44.001	3	2	Median	931230000	457070000	474160000	61224000	20638000	40586000	286230000	144560000	141670000	408670000	208100000	200570000	175110000	83770000	91337000	58763	1283	55371	357771;357772;357773;357774;357775;357776;357777;357778;357779;357780;357781;357782;357783;357784;357785;357786;357787	482933;482934;482935;482936;482937;482938;482939;482940;482941;482942;482943;482944;482945;482946;482947;482948;482949;482950;482951;482952;482953;482954;482955	482934			22	
YGEDGLAGESVEFQNLATLKPSNK	2	Unmodified	2566.2551	0.25511165	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	79.347	79.093	3	4.1896E-05	68633	160511_QHF_FH_JSI12i_3	52.321	44.609			0.81094	0.80769	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81094	0.80769	NaN	1	1	Median	29958000	17296000	12662000	0	0	0	0	0	0	0	0	0	29958000	17296000	12662000	58764	1251	55372	357788	482956	482956			1	
YGEFFPVPESILTSMKK	2	Unmodified	1972.0016	0.0015864895	5282	Q9UGM6	WARS2	Tryptophan--tRNA ligase, mitochondrial	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	100.87	100.89	3	0.0060733	87483	160511_QHF_FH_JSI12i_3	46.663	33.036			0.72416	0.74712	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72416	0.74712	NaN	1	1	Median	25467000	15635000	9832500	0	0	0	0	0	0	0	0	0	25467000	15635000	9832500	58765	5282	55373	357789	482957	482957			1	
YGEGDSLTLQQLK	1	Unmodified	1450.7304	0.73037367	2613	Q15043	SLC39A14	Zinc transporter ZIP14	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.867	56.208	2	0.00018093	50954	160511_QHF_FH_JSI12i_1	101.39	65.073			1.1638	1.24	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1638	1.24	NaN	1	0	Median	341900000	172380000	169520000	0	0	0	0	0	0	0	0	0	341900000	172380000	169520000	58766	2613	55374	357790	482958	482958			1	
YGEGHQAWIIGIVEK	1	Unmodified	1698.873	0.87295558	1691	P49903	SEPHS1	Selenide, water dikinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			2						5	1	2	1	3	77.518	70.825	2;3	1.2869E-62	38695	160513_QHF_FH_JSI10Kac_6	229.32	203.39			0.88789	0.94612	81.141	6	1	Median	1.4898	1.2507	NaN	1	0	Median	0.95153	1.1417	18.312	2	0	Median	0.94968	0.89244	NaN	1	0	Median	0.29858	0.30711	101.51	2	1	Median	759660000	404260000	355400000	171630000	54887000	116740000	345550000	187550000	158000000	77822000	42560000	35261000	164670000	119270000	45400000	58767	1691	55375	357791;357792;357793;357794;357795;357796;357797	482959;482960;482961;482962;482963;482964;482965;482966;482967	482966			8	
YGEIPAELR	0	Unmodified	1046.5397	0.53965977	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		47.005	46.267	2	0.0036856	39871	160511_QHF_FH_JSI11i_2	59.245	41.21			1.0967	1.2197	9.2451	2	0	Median	NaN	NaN	NaN	0	0	Median	1.068	1.3021	NaN	1	0	Median	1.1261	1.1425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	219870000	119530000	100340000	0	0	0	85393000	46220000	39173000	134480000	73311000	61168000	0	0	0	58768	4221	55376	357798;357799	482968;482969	482968			2	
YGEMPVDK	1	Unmodified	937.42152	0.42151847	2403	Q13418	ILK	Integrin-linked protein kinase	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	24.862	24.324	2	0.020585	21586	160511_QHF_FH_JSI12i_1	45.68	36.44			0.40018	0.42058	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.40018	0.42058	NaN	1	0	Median	122430000	82843000	39589000	0	0	0	0	0	0	0	0	0	122430000	82843000	39589000	58769	2403	55377	357800	482970	482970			1	
YGEPGEVFINK	1	Unmodified	1251.6136	0.61355299	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.08	0.828	4	4	5							3	3	5	2	49.05	48.328	2	1.355E-09	41605	160511_QHF_FH_JSI11i_2	128.28	110.37			1.5247	2.2147	33.515	12	8	Linear	2.2741	1.8902	27.832	3	2	Plateau	1.0863	1.5931	25.978	3	2	Plateau	1.7097	1.6941	49.545	4	3	Median	1.2167	1.2646	41.022	2	1	Median	5104600000	1850900000	3253700000	1197500000	349790000	847670000	1445700000	601570000	844130000	1688800000	581510000	1107300000	772640000	318000000	454650000	58770	1222	55378	357801;357802;357803;357804;357805;357806;357807;357808;357809;357810;357811;357812;357813	482971;482972;482973;482974;482975;482976;482977;482978;482979;482980;482981;482982;482983;482984;482985;482986;482987;482988;482989;482990;482991;482992;482993	482991			23	
YGEPGEVFINKGK	2	Acetyl (K)	1478.7405	0.74054442	1222	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							6				1	2	3	67.508	56.678	2;3	0.00078994	30575	160513_QHF_FH_JSI10Kac_4	84.17	73.34			0.50321	1.7341	143.94	4	1	Linear	NaN	NaN	NaN	0	0	Median	1.112	1.3495	NaN	1	0	Median	0.51083	0.51192	NaN	1	0	Median	0.1463	0.15742	172.56	2	1	Median	20912000	13773000	7138200	0	0	0	8073900	3918400	4155500	5204600	3861800	1342800	7633100	5993200	1639900	58771	1222	55379	357814;357815;357816;357817;357818;357819	482994;482995;482996;482997;482998;482999;483000	482994	1095		7	
YGEPSEVFINR	0	Unmodified	1309.6303	0.63026569	3809	Q8WXF1	PSPC1	Paraspeckle component 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	49.249	48.111	2	0.0011577	41099	160511_QHF_FH_JSI12i_2	83.647	71.421			0.84602	1.0479	25.264	3	1	Median	1.7214	1.4688	NaN	1	0	Median	0.84602	1.0479	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.81187	0.89588	NaN	1	0	Median	235940000	113320000	122620000	80814000	33157000	47657000	78622000	45344000	33278000	0	0	0	76508000	34818000	41690000	58772	3809	55380	357820;357821;357822	483001;483002	483001			2	
YGEPTLRR	0	Unmodified	990.52468	0.52467841	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.33	0.471		2	1							2	1			15.021	14.245	3	0.024508	11134	160511_QHF_FH_JSI9i_3	27.824	13.617			1.3189	1.2364	5.7023	3	1	Plateau	1.4184	1.1823	7.5561	2	1	Median	0.92274	1.1422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	221950000	108590000	113360000	173310000	80367000	92943000	48639000	28224000	20414000	0	0	0	0	0	0	58773	2370	55381	357823;357824;357825	483003;483004;483005	483003			3	
YGEVLNLVLSSK	1	Unmodified	1320.7289	0.7289171	5038	Q9NVM6	DNAJC17	DnaJ homolog subfamily C member 17	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	81.101	80.951	2	0.00026538	70367	160511_QHF_FH_JSI12i_3	91.961	70.513			1.4657	1.3923	48.776	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4657	1.3923	NaN	1	1	Median	0.97029	0.98158	62.798	2	2	Median	139550000	71903000	67650000	0	0	0	0	0	0	24944000	8720600	16224000	114610000	63183000	51427000	58774	5038	55382	357826;357827;357828	483006;483007;483008	483008			3	
YGEYFPGTGDLR	0	Unmodified	1373.6252	0.62518031	3882;2438	Q13547;Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.85	5.6	4	4	2					3		3	3	4	3	59.867	56.776	2	7.9652E-08	48683	160511_QHF_FH_JSI12i_2	137.95	135.8			0.81759	0.94395	29.41	13	2	Median	1.3717	1.1264	8.7178	3	0	Median	0.75282	0.94395	3.8973	3	0	Median	0.92666	0.9215	44.8	4	2	Median	0.71068	0.7675	8.3808	3	0	Plateau	2249400000	1175100000	1074300000	373150000	154480000	218670000	591150000	339760000	251390000	803650000	403570000	400070000	481480000	277260000	204220000	58775	2438;3882	55383	357829;357830;357831;357832;357833;357834;357835;357836;357837;357838;357839;357840;357841	483009;483010;483011;483012;483013;483014;483015;483016;483017;483018;483019;483020;483021;483022;483023;483024;483025	483013			17	
YGFGEAGKPK	2	Unmodified	1052.5291	0.52909508	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	16.759	16.503	3	0.0049354	13111	160511_QHF_FH_JSI12i_3	48.44	41.837			1.1847	1.1464	65.163	4	3	Median	NaN	NaN	NaN	0	0	Median	1.8583	2.1245	NaN	1	1	Median	1.0411	0.99262	81.652	2	2	Median	0.75522	0.74323	NaN	1	0	Median	831780000	368150000	463630000	0	0	0	36512000	15910000	20602000	449640000	165710000	283930000	345630000	186530000	159100000	58776	2419	55384	357842;357843;357844;357845	483026;483027;483028;483029;483030	483029			5	
YGFIEGHVVIPR	0	Unmodified	1385.7456	0.74557022	1089	P16070	CD44	CD44 antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.38	6.61		4	8						9	5	5	5	6	64.728	60.652	2;3	8.1547E-20	32962	160513_QHF_FH_JSI11Kac_6	131.43	122.38			1.0637	1.0505	23.728	20	2	Median	1.3234	1.1045	24.725	5	0	Median	0.81597	0.99067	13.183	5	0	Median	1.3195	1.2442	9.2568	5	1	Median	0.70456	0.75942	17.255	5	1	Median	7242500000	3482600000	3759900000	779070000	323600000	455480000	1709500000	939940000	769540000	2583900000	1093700000	1490200000	2170100000	1125400000	1044700000	58777	1089	55385	357846;357847;357848;357849;357850;357851;357852;357853;357854;357855;357856;357857;357858;357859;357860;357861;357862;357863;357864;357865;357866	483031;483032;483033;483034;483035;483036;483037;483038;483039;483040;483041;483042;483043;483044;483045;483046;483047;483048;483049;483050;483051;483052;483053;483054;483055;483056;483057;483058;483059;483060;483061;483062;483063;483064;483065;483066;483067	483041			37	
YGFLWPGLNVPLMK	1	Unmodified	1633.8691	0.86905617	2108	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	102.16	102.08	2	3.4294E-06	84658	160511_QHF_FH_JSI10i_3	133.13	117.5			0.17622	0.19033	109.57	4	4	Median	0.047798	0.037532	NaN	1	1	Median	0.24005	0.2811	NaN	1	1	Median	0.50444	0.46436	NaN	1	1	Median	0.12937	0.12887	NaN	1	1	Median	2035000000	1658400000	376590000	511560000	479780000	31780000	269610000	222870000	46734000	341470000	210220000	131250000	912310000	745480000	166830000	58778	2108	55386	357867;357868;357869;357870	483068;483069;483070;483071	483069			4	
YGFNEGHSFR	0	Unmodified	1212.5312	0.53122035	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0	By MS/MS				3	0			1							1				29.004	27.624	3	0.03882	22429	160511_QHF_FH_JSI9i_3	25.964	21.81			1.3242	1.0887	NaN	1	1	Median	1.3242	1.0887	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27639000	13187000	14452000	27639000	13187000	14452000	0	0	0	0	0	0	0	0	0	58779	5173	55387	357871	483072	483072			1	
YGFQSLR	0	Unmodified	869.43955	0.43955179	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			34.877	33.456	2	0.032886	28104	160511_QHF_FH_JSI10i_3	50.898	39.829			0.89873	1.0086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.89873	1.0086	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102380000	55813000	46565000	0	0	0	102380000	55813000	46565000	0	0	0	0	0	0	58780	5300	55388	357872	483073;483074	483074			2	
YGFYTHVFR	0	Unmodified	1188.5716	0.5716286	46	CON__P00735;P00734	F2	Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain	yes	no	0	0	0	0		By MS/MS	By matching	By matching	16	0									3		1	1	1	58.416	49.053	3	0.00084954	26757	160513_QHF_FH_JSI10Kac_6	68.016	63.862		+	0.90059	1.0484	17.312	3	0	Median	NaN	NaN	NaN	0	0	Median	0.90059	1.0572	NaN	1	0	Median	1.0705	1.0484	NaN	1	0	Median	0.72315	0.78012	NaN	1	0	Median	76664000	43849000	32815000	0	0	0	46065000	26986000	19079000	15152000	7064700	8087300	15447000	9798000	5648600	58781	46	55389	357873;357874;357875	483075;483076	483076			2	
YGGAPQALTLK	1	Unmodified	1117.6132	0.61315906	726	O95782	AP2A1	AP-2 complex subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	44.755	43.7	2	0.0024772	37252	160511_QHF_FH_JSI12i_2	72.243	62.332			1.0959	1.2312	14.08	5	2	Median	1.5138	1.3303	NaN	1	0	Median	1.0182	1.2748	NaN	1	0	Median	1.2096	1.1996	NaN	1	1	Median	0.958	1.0698	19.877	2	1	Median	903840000	457650000	446190000	103300000	40776000	62522000	107260000	52046000	55218000	209110000	104940000	104170000	484160000	259880000	224280000	58782	726	55390	357876;357877;357878;357879;357880	483077;483078;483079;483080;483081;483082	483078			6	
YGGDEIPFSPYR	0	Unmodified	1399.6408	0.64083038	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	3.22	8	5	3					1		4	4	6	3	65.215	63.563	2	7.0008E-23	54555	160511_QHF_FH_JSI12i_2	177.06	45.053			1.0051	1.0584	8.4168	12	6	Median	1.2805	1.0723	2.7636	3	1	Plateau	0.87941	1.0825	5.1	3	2	Plateau	1.0721	1.0582	10.464	4	2	Median	0.83409	0.90927	1.6388	2	1	Median	3733600000	1800900000	1932600000	655940000	255330000	400610000	997930000	512090000	485840000	1248500000	616680000	631840000	831190000	416850000	414340000	58783	1192	55391	357881;357882;357883;357884;357885;357886;357887;357888;357889;357890;357891;357892;357893;357894;357895;357896;357897	483083;483084;483085;483086;483087;483088;483089;483090;483091;483092;483093;483094;483095;483096;483097;483098;483099;483100;483101	483087			19	
YGGDEIPYSPFR	0	Unmodified	1399.6408	0.64083038	2527	Q14315	FLNC	Filamin-C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	4.4			4				1			1	2	1	1	66.655	63.256	2	0.016529	56556	160511_QHF_FH_JSI11i_3	42.743	0.74241			0.91243	0.95886	8.7528	4	0	Median	1.3534	1.107	NaN	1	0	Median	0.81919	0.95886	4.1766	2	0	Median	0.98223	0.91026	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	160320000	75941000	84380000	47241000	18638000	28603000	40242000	18121000	22121000	72837000	39182000	33656000	0	0	0	58784	2527	55392	357898;357899;357900;357901;357902	483102;483103;483104;483105;483106	483102			5	
YGGDPQNPHK	1	Unmodified	1111.5047	0.50467125	3701	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		2											2	6.945	6.3433	3	0.048437	4270	160511_QHF_FH_JSI12i_2	25.474	17.587			0.71188	0.78456	44.028	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71188	0.78456	44.028	2	2	Median	88745000	42280000	46466000	0	0	0	0	0	0	0	0	0	88745000	42280000	46466000	58785	3701	55393	357903;357904	483107;483108	483108			2	
YGGEEEDQPIYLAVK	1	Unmodified	1709.8148	0.81483158	5428	Q9UMX5	NENF	Neudesin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	63.858	63.231	2	1.0049E-09	57082	160511_QHF_FH_JSI10i_1	145.91	124.54			0.87686	0.86314	75.796	5	2	Median	1.271	1.0602	NaN	1	1	Median	0.68776	0.80395	NaN	1	0	Median	0.87686	0.86314	NaN	1	0	Median	0.49543	0.50842	136.43	2	1	Median	447990000	268870000	179120000	95670000	40653000	55017000	97256000	66434000	30821000	91835000	59600000	32235000	163230000	102190000	61044000	58786	5428	55394	357905;357906;357907;357908;357909	483109;483110;483111;483112;483113;483114	483113			6	
YGGELVPHFPAR	0	Unmodified	1341.683	0.68296996	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6								1	4	2	53.741	53.317	2;3	5.7501E-05	47205	160511_QHF_FH_JSI11i_3	77.744	71.743			0.95164	0.94306	9.9028	6	3	Median	NaN	NaN	NaN	0	0	Median	0.99465	1.1148	NaN	1	0	Median	1.0345	0.96331	3.6853	3	2	Median	0.84127	0.86226	4.0361	2	1	Median	1779200000	909000000	870180000	0	0	0	138100000	72305000	65791000	993230000	478820000	514400000	647860000	357870000	289990000	58787	512	55395	357910;357911;357912;357913;357914;357915;357916	483115;483116;483117;483118;483119;483120;483121;483122;483123;483124;483125	483116			11	
YGGISTASVDFEQPTR	0	Unmodified	1726.8162	0.81622856	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	3	1	58.49	58.01	2	2.9576E-07	52474	160511_QHF_FH_JSI10i_1	154.28	128.66			1.4121	1.5788	24.054	5	4	Median	NaN	NaN	NaN	0	0	Median	1.4121	1.6569	NaN	1	1	Median	1.3132	1.2363	25.288	3	2	Median	1.6046	1.6416	NaN	1	1	Median	300680000	137920000	162760000	0	0	0	58219000	24014000	34206000	173890000	80057000	93828000	68577000	33853000	34724000	58788	2140	55396	357917;357918;357919;357920;357921	483126;483127;483128;483129;483130	483129			5	
YGGISTASVDFEQPTRDGLGSDNIGSR	0	Unmodified	2798.3107	0.31072905	2140	P98175	RBM10	RNA-binding protein 10	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				67.782	66.884	3	0.038308	58900	160511_QHF_FH_JSI9i_2	23.917	20.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	17613000	0	17613000	17613000	0	17613000	0	0	0	0	0	0	0	0	0	58789	2140	55397	357922	483131	483131			1	
YGGPNHIVGSPFK	1	Unmodified	1371.6935	0.69353465	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.23		2	8						5	4	5	3	3	43.828	40.957	2;3	1.075E-05	34686	160511_QHF_FH_JSI12i_3	135.99	104.56			0.84165	0.96189	38.268	13	1	Median	1.6612	1.3871	44.702	4	1	Median	0.84165	0.96189	18.893	3	0	Median	0.79816	0.75	16.544	3	0	Median	0.76338	0.77011	2.0838	3	0	Median	4848200000	2401900000	2446300000	863670000	303770000	559910000	1095800000	600900000	494940000	1224400000	554200000	670170000	1664300000	943010000	721260000	58790	512	55398	357923;357924;357925;357926;357927;357928;357929;357930;357931;357932;357933;357934;357935;357936;357937	483132;483133;483134;483135;483136;483137;483138;483139;483140;483141;483142;483143;483144;483145;483146;483147;483148;483149;483150;483151;483152;483153;483154;483155;483156;483157;483158;483159;483160	483156			29	
YGGPPPDSVYSGQQPSVGTEIFVGK	1	Unmodified	2565.2387	0.23873331	423	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.12	0.331	7	1								1	3	2	2	77.75	77.291	2;3	8.7838E-29	69962	160511_QHF_FH_JSI10i_1	124.66	118.22			0.94142	1.0346	15.27	8	1	Median	1.4042	1.1457	NaN	1	0	Median	0.90694	1.0713	16.852	3	1	Median	1.1171	1.0828	11.363	2	0	Median	0.80468	0.84086	0.66184	2	0	Median	984510000	525490000	459020000	136310000	56468000	79839000	323480000	184030000	139460000	219970000	97687000	122290000	304740000	187310000	117440000	58791	423	55399	357938;357939;357940;357941;357942;357943;357944;357945	483161;483162;483163;483164;483165;483166;483167;483168;483169;483170;483171;483172;483173;483174;483175;483176;483177;483178;483179;483180;483181;483182;483183;483184;483185;483186	483176			26	
YGGPPPDSVYSGVQPGIGTEVFVGK	1	Unmodified	2506.238	0.23800503	326	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.29	0.452	5	2								2	2	1	2	84.605	84.101	2;3	3.8615E-14	76302	160511_QHF_FH_JSI10i_1	111.97	108.51			0.78453	0.77597	41.084	7	3	Median	0.8	0.67882	79.826	2	1	Median	0.56757	0.67831	48.57	2	1	Median	1.0287	1.007	NaN	1	0	Median	0.71324	0.71403	11.765	2	1	Median	570610000	317970000	252640000	102450000	47110000	55339000	198840000	116340000	82501000	122060000	63081000	58982000	147260000	91439000	55816000	58792	326	55400	357946;357947;357948;357949;357950;357951;357952	483187;483188;483189;483190;483191;483192;483193;483194;483195;483196;483197;483198;483199;483200;483201;483202;483203	483196			17	
YGGPPPGWEGPHPQR	0	Unmodified	1630.7641	0.76407383	4	A0AV96	RBM47	RNA-binding protein 47	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			36.895	35.437	3	0.0023181	29598	160511_QHF_FH_JSI10i_3	47.545	42.466			1.0816	1.2342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0816	1.2342	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35599000	15156000	20443000	0	0	0	35599000	15156000	20443000	0	0	0	0	0	0	58793	4	55401	357953	483204	483204			1	
YGGPYHIGGSPFK	1	Unmodified	1378.667	0.66698555	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.97	6.24		7	14						10	6	10	6	9	50.081	46.343	2;3	1.7795E-31	38860	160511_QHF_FH_JSI10i_3	196.27	175.37			0.98963	0.92753	39.936	27	9	Median	1.2397	1.0201	14.954	6	0	Median	0.86662	1.0314	49.012	8	3	Median	1.0974	1.0369	13.558	5	0	Median	0.81237	0.84732	50.428	8	6	Median	27607000000	14919000000	12689000000	3024900000	1170100000	1854800000	4940500000	2751400000	2189100000	5072500000	2510600000	2561900000	14570000000	8486800000	6082800000	58794	1192	55402	357954;357955;357956;357957;357958;357959;357960;357961;357962;357963;357964;357965;357966;357967;357968;357969;357970;357971;357972;357973;357974;357975;357976;357977;357978;357979;357980;357981;357982;357983;357984	483205;483206;483207;483208;483209;483210;483211;483212;483213;483214;483215;483216;483217;483218;483219;483220;483221;483222;483223;483224;483225;483226;483227;483228;483229;483230;483231;483232;483233;483234;483235;483236;483237;483238;483239;483240;483241;483242;483243;483244;483245;483246;483247;483248;483249;483250;483251;483252;483253;483254;483255;483256;483257;483258;483259;483260	483220			56	
YGGQPVPNFPSK	1	Unmodified	1289.6404	0.64043645	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.43	5	4	1				1	5		4	4	4	4	49.02	44.329	2	3.3545E-14	40706	160511_QHF_FH_JSI12i_1	132.78	108.62			0.86529	0.90036	17.282	13	1	Median	1.1989	1.1418	11.503	4	0	Linear	0.75692	0.90036	12.327	3	0	Median	0.89448	0.88941	24.178	4	1	Median	0.73536	0.82536	20.066	2	0	Median	3662100000	1947000000	1715100000	1124000000	458630000	665340000	1044800000	664690000	380160000	1154000000	621950000	532000000	339350000	201760000	137590000	58795	1192	55403	357985;357986;357987;357988;357989;357990;357991;357992;357993;357994;357995;357996;357997;357998;357999;358000	483261;483262;483263;483264;483265;483266;483267;483268;483269;483270;483271;483272;483273;483274;483275;483276;483277;483278;483279;483280;483281;483282;483283;483284;483285;483286;483287	483268			27	
YGGRDYSLDEFEANK	1	Unmodified	1762.7798	0.77984305	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		49.132	48.462	3	0.027062	42772	160511_QHF_FH_JSI10i_2	34.851	30.15			1.3572	2.2498	32.931	3	0	Plateau	1.3572	1.1647	NaN	1	0	Median	1.325	1.5929	NaN	1	0	Median	2.3126	2.2498	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	108850000	37954000	70895000	20206000	8217100	11989000	25545000	10433000	15112000	63097000	19304000	43794000	0	0	0	58796	5161	55404	358001;358002;358003	483288;483289	483289			2	
YGGTFQNVSVQLPITLNK	1	Unmodified	1978.0524	0.052376507	635	O94973	AP2A2	AP-2 complex subunit alpha-2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	92.092	92.077	2;3	9.5013E-11	79796	160511_QHF_FH_JSI12i_3	106.58	95.652			1.3119	1.2625	30.54	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.349	1.2937	3.4503	2	2	Median	0.8126	0.76353	NaN	1	0	Median	71776000	32666000	39110000	0	0	0	0	0	0	39582000	16144000	23439000	32194000	16522000	15672000	58797	635	55405	358004;358005;358006;358007	483290;483291;483292;483293;483294	483294			5	
YGHELLINTLITSGADTAK	1	Unmodified	2016.0528	0.052770437	243	O15084;Q8N8A2	ANKRD28;ANKRD44	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A;Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B	yes	no	0	0	0	0			By MS/MS		3	0			1									1		78.302	78.302	3	0.0097965	69938	160511_QHF_FH_JSI11i_3	38.878	29.128			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58798	243	55406	358008	483295	483295			1	
YGIEPTMVVQGVK	1	Unmodified	1419.7432	0.74318696	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.44	0.497	5	4								2	3	2	2	66.798	66.093	2	7.6444E-05	57723	160511_QHF_FH_JSI11i_2	100.48	89.647			0.92162	1.0795	24.995	9	4	Median	1.5548	1.3199	13.173	2	1	Median	0.72574	0.85397	16.115	3	1	Median	1.0578	1.034	39.269	2	1	Median	0.87453	0.94123	28.936	2	1	Median	382170000	198960000	183210000	65412000	25080000	40332000	134160000	79149000	55012000	117950000	62551000	55402000	64650000	32184000	32466000	58799	5	55407	358009;358010;358011;358012;358013;358014;358015;358016;358017	483296;483297;483298;483299;483300;483301;483302;483303;483304;483305;483306;483307	483306			12	
YGIICMEDLIHEIYTVGK	1	Unmodified	2153.0537	0.053698415	1138	P18124	RPL7	60S ribosomal protein L7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.83	6.49		3	1						2	1	1	3	1	100.13	97.601	3	1.4214E-17	52410	160513_QHF_FH_JSI10Kac_6	142.3	99.96			1.2647	1.3115	25.783	6	5	Median	1.0198	0.87121	NaN	1	1	Median	0.73366	0.8725	NaN	1	0	Median	1.2763	1.3096	11.333	3	3	Plateau	1.2531	1.4319	NaN	1	1	Median	1832600000	936910000	895680000	149360000	72969000	76389000	213980000	138990000	74987000	1154700000	559970000	594710000	314580000	164980000	149600000	58800	1138	55408	358018;358019;358020;358021;358022;358023	483308;483309;483310;483311;483312;483313	483313			6	
YGINTDPPK	1	Unmodified	1003.4975	0.4974606	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		25.599	25.423	2	0.014191	22347	160511_QHF_FH_JSI11i_1	55.676	28.151			0.88331	0.87261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88331	0.87261	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	113100000	45777000	67319000	0	0	0	0	0	0	113100000	45777000	67319000	0	0	0	58801	5574	55409	358024	483314	483314			1	
YGINTTDIFQTVDLWEGK	1	Unmodified	2099.0211	0.021135958	1470	P37802	TAGLN2	Transgelin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.23	6.69	6	8	1						7	3	8	5	6	100.12	97.726	2;3	0	87599	160511_QHF_FH_JSI12i_2	404.77	382.45			0.92405	0.94669	23.752	21	5	Median	1.4911	1.2668	17.87	3	1	Plateau	0.81109	0.96269	12.44	7	2	Median	1.0622	1.0297	9.6974	5	1	Median	0.77892	0.85918	23.653	6	1	Median	14042000000	7559800000	6482100000	1512000000	659000000	852960000	3783600000	2176000000	1607600000	4063500000	2025800000	2037700000	4682900000	2699000000	1983800000	58802	1470	55410	358025;358026;358027;358028;358029;358030;358031;358032;358033;358034;358035;358036;358037;358038;358039;358040;358041;358042;358043;358044;358045;358046	483315;483316;483317;483318;483319;483320;483321;483322;483323;483324;483325;483326;483327;483328;483329;483330;483331;483332;483333;483334;483335;483336;483337;483338;483339;483340;483341;483342;483343;483344;483345;483346	483319			32	
YGIPEPPEPK	1	Unmodified	1125.5706	0.57062555	2140;1782	P98175;P52756	RBM10;RBM5	RNA-binding protein 10;RNA-binding protein 5	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		45.65	44.97	2	0.0043293	39970	160511_QHF_FH_JSI9i_1	66.27	55.049			1.7952	3.4629	49.187	3	3	Plateau	1.7952	1.4816	NaN	1	1	Median	3.0691	3.5942	NaN	1	1	Median	1.6147	1.5941	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	324480000	94020000	230460000	75778000	26537000	49241000	147180000	37926000	109250000	101530000	29556000	71970000	0	0	0	58803	2140;1782	55411	358047;358048;358049	483347;483348;483349	483349			3	
YGIPIGAKPTSVQLAK	2	Unmodified	1641.9454	0.94539224	15	A3KMH1	VWA8	von Willebrand factor A domain-containing protein 8	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			2							1			1	58.695	57.15	3	0.010263	49051	160511_QHF_FH_JSI12i_3	42.338	30.724			1.8877	1.5459	NaN	1	1	Median	1.8877	1.5459	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	88043000	33667000	54377000	88043000	33667000	54377000	0	0	0	0	0	0	0	0	0	58804	15	55412	358050;358051	483350;483351	483351			2	
YGIPYFETSAATGQNVEK	1	Unmodified	1973.9371	0.93707198	106	O00194	RAB27B	Ras-related protein Rab-27B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	2	1	1	69.341	68.752	2	0.00050035	62355	160511_QHF_FH_JSI10i_1	78.814	60.678			0.68619	0.7234	74.982	2	2	Median	NaN	NaN	NaN	0	0	Median	0.37563	0.42571	NaN	1	1	Median	1.2535	1.2293	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48578000	22621000	25957000	11946000	0	11946000	23357000	17553000	5803400	13276000	5068200	8207700	0	0	0	58805	106	55413	358052;358053;358054;358055;358056	483352;483353;483354;483355;483356	483353			5	
YGIQADAK	1	Unmodified	864.43413	0.43413207	3965	Q96AC1	FERMT2	Fermitin family homolog 2	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		15.352	15.229	2	0.0053228	12710	160511_QHF_FH_JSI11i_1	63.565	47.411			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58806	3965	55414	358057	483357	483357			1	
YGIQMPAFSK	1	Unmodified	1140.5638	0.56376603	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.09	0.793	3	4	4							2	3	3	3	65.497	64.815	2	2.664E-07	55499	160511_QHF_FH_JSI12i_2	113.74	106.84			1.2374	1.1342	62.914	10	3	Median	3.6173	2.9681	130.01	2	1	Median	0.984	1.1895	43.491	2	1	Median	1.1696	1.0867	23.936	3	1	Median	1.0166	1.0532	40.435	3	0	Median	2403500000	978750000	1424800000	323700000	106050000	217640000	656200000	247340000	408870000	861710000	374300000	487410000	561910000	251060000	310840000	58807	1600	55415	358058;358059;358060;358061;358062;358063;358064;358065;358066;358067;358068	483358;483359;483360;483361;483362;483363;483364;483365;483366;483367;483368;483369;483370;483371;483372;483373;483374;483375;483376	483362			19	
YGIRPENVIIYGQSIGTVPSVDLAAR	0	Unmodified	2787.4919	0.4919283	2981	Q5VST6	ABHD17B	Alpha/beta hydrolase domain-containing protein 17B	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			96.318	95.51	3	0.0014846	79437	160511_QHF_FH_JSI10i_3	36.576	33.24			1.2489	1.5104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2489	1.5104	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7457000	2416100	5040800	0	0	0	7457000	2416100	5040800	0	0	0	0	0	0	58808	2981	55416	358069	483377	483377			1	
YGISGELAMRPLASLSGGQK	1	Unmodified	2034.0568	0.056809958	5014	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			77.143	75.726	3	0.0213	63581	160511_QHF_FH_JSI10i_3	31.111	21.453			0.87103	0.83973	16.589	2	0	Median	0.89981	0.74678	NaN	1	0	Median	0.84317	0.94424	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55064000	27916000	27148000	33231000	16180000	17051000	21833000	11736000	10096000	0	0	0	0	0	0	58809	5014	55417	358070;358071	483378	483378			1	
YGISNEKPEVK	2	Unmodified	1262.6507	0.65066678	3563	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	2	1	1	22.501	21.826	2;3	0.010146	18718	160511_QHF_FH_JSI10i_2	63.283	44.972			1.2055	1.224	55.2	6	2	Median	1.491	1.2666	10.388	2	0	Median	0.89141	1.1006	20.588	2	0	Median	2.7454	2.7802	NaN	1	1	Median	0.49065	0.50625	NaN	1	1	Median	356860000	188320000	168540000	82263000	32105000	50158000	137160000	80195000	56969000	19976000	3522900	16453000	117450000	72493000	44958000	58810	3563	55418	358072;358073;358074;358075;358076;358077	483379;483380;483381;483382;483383	483381			5	
YGISSMIQSQEKPDR	1	Unmodified	1737.8356	0.83558379	1064	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.921	44.339	3	1.6823E-05	36948	160511_QHF_FH_JSI10i_3	120.53	107.39			0.82131	0.79713	10.354	2	1	Median	1.0609	0.85768	NaN	1	1	Median	0.63586	0.74085	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	183440000	93467000	89974000	85540000	33336000	52205000	97901000	60131000	37770000	0	0	0	0	0	0	58811	1064	55419	358078;358079	483384;483385;483386	483384			3	
YGIVDYMIEQSGPPSK	1	Unmodified	1782.8498	0.84983687	1034	P13667	PDIA4	Protein disulfide-isomerase A4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	4.43	3	11	9						3	6	4	9	7	80.876	79.039	2;3	3.9611E-98	71576	160511_QHF_FH_JSI11i_3	264.72	258.06			1.263	1.1431	28.275	20	11	Median	1.3315	1.1431	7.5992	4	1	Median	1.0331	1.2721	24.442	2	1	Median	1.6402	1.6023	23.429	9	6	Median	0.76028	0.7669	31.633	5	3	Median	3119600000	1432000000	1687500000	373010000	165730000	207290000	303540000	146320000	157220000	1590900000	657360000	933520000	852130000	462620000	389510000	58812	1034	55420	358080;358081;358082;358083;358084;358085;358086;358087;358088;358089;358090;358091;358092;358093;358094;358095;358096;358097;358098;358099;358100;358101;358102;358103;358104;358105	483387;483388;483389;483390;483391;483392;483393;483394;483395;483396;483397;483398;483399;483400;483401;483402;483403;483404;483405;483406;483407;483408;483409;483410;483411;483412;483413;483414;483415;483416;483417;483418;483419;483420;483421	483388			35	
YGKDATNVGDEGGFAPNILENK	2	Unmodified	2308.0972	0.097154447	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	62.791	62.51	3	1.5356E-05	53916	160511_QHF_FH_JSI12i_3	66.467	57.967			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58813	854	55421	358106	483422	483422			1	
YGKSLYYYIQQDTK	2	Acetyl (K)	1810.8778	0.87776618	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	78.816	70.282	2;3	2.8974E-55	38206	160513_QHF_FH_JSI11Kac_6	206.32	191.64			0.80376	0.81919	34.899	4	0	Median	NaN	NaN	NaN	0	0	Median	0.98197	1.1685	NaN	1	0	Median	0.63981	0.61632	26.795	2	0	Median	0.83738	0.9009	NaN	1	0	Median	279630000	182590000	97046000	0	0	0	33364000	20179000	13186000	219990000	147160000	72828000	26279000	15246000	11033000	58814	870	55422	358107;358108;358109;358110	483423;483424;483425;483426;483427	483424	578		5	
YGLFAPVHK	1	Unmodified	1030.56	0.56000128	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	6.25	5.63			6						2	3	2		3	42.402	41.387	2;3	6.6862E-05	34819	160511_QHF_FH_JSI10i_3	71.501	62.287			0.76495	0.87543	38.412	5	3	Median	0.63694	0.51927	NaN	1	1	Median	0.76601	0.88053	0.82195	2	0	Median	NaN	NaN	NaN	0	0	Median	0.76689	0.84937	61.7	2	2	Median	363570000	189750000	173830000	62564000	36284000	26280000	153490000	74787000	78704000	0	0	0	147520000	78674000	68843000	58815	1360	55423	358111;358112;358113;358114;358115;358116;358117;358118	483428;483429;483430;483431;483432;483433;483434;483435;483436	483430			9	
YGLFAPVHKVTK	2	Acetyl (K)	1400.7816	0.78162138	1360	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.771	56.132	3	0.011178	30402	160513_QHF_FH_JSI11Kac_6	39.509	31.405			0.48703	0.46998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48703	0.46998	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	9188500	6646800	2541700	0	0	0	0	0	0	9188500	6646800	2541700	0	0	0	58816	1360	55424	358119	483437	483437	1294		1	
YGLFPANYVELR	0	Unmodified	1440.7402	0.74015049	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	86.04	85.013	2	0.012829	73462	160511_QHF_FH_JSI12i_2	54.416	35.636			0.26605	0.27842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26605	0.27842	NaN	1	1	Median	16931000	12869000	4062100	0	0	0	0	0	0	0	0	0	16931000	12869000	4062100	58817	2522	55425	358120	483438	483438			1	
YGLFPANYVELRQ	0	Unmodified	1568.7987	0.798728	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	82.7	82.163	2	8.3857E-06	73030	160511_QHF_FH_JSI10i_2	87.328	59.707			0.95746	1.0019	21.975	6	2	Median	1.6369	1.3809	NaN	1	0	Median	0.7714	0.93161	NaN	1	1	Median	1.0711	1.0732	24.164	2	1	Median	0.84983	0.91309	23.416	2	0	Median	328530000	162290000	166230000	53360000	21162000	32198000	57190000	33216000	23974000	133150000	64255000	68900000	84820000	43662000	41158000	58818	2522	55426	358121;358122;358123;358124;358125;358126;358127	483439;483440;483441;483442;483443;483444;483445;483446;483447;483448;483449	483447			11	
YGLIFHSTFIGR	0	Unmodified	1409.7456	0.74557022	153	O00567	NOP56	Nucleolar protein 56	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	1	1	2	75.996	67.346	2;3	8.5817E-26	36666	160513_QHF_FH_JSI11Kac_6	174.4	153.61			1.3241	1.1708	21.782	6	1	Median	1.3751	1.1708	9.2089	2	1	Median	0.87414	1.032	NaN	1	0	Median	1.5438	1.4727	NaN	1	0	Median	1.0266	1.0773	38.338	2	0	Median	1569300000	738560000	830700000	274790000	120490000	154300000	828670000	393950000	434720000	241840000	100050000	141780000	223970000	124070000	99903000	58819	153	55427	358128;358129;358130;358131;358132;358133;358134	483450;483451;483452;483453;483454;483455;483456;483457;483458;483459	483451			10	
YGLIGLNGIGK	1	Unmodified	1103.6339	0.63389451	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	1	2	1	69.413	68.643	2	7.243E-05	59540	160511_QHF_FH_JSI12i_3	91.783	25.101			1.189	1.0375	36.962	5	0	Median	1.2158	0.9912	NaN	1	0	Median	0.8795	1.0071	NaN	1	0	Median	1.6902	1.6096	53.544	2	0	Median	1.0259	1.0375	NaN	1	0	Median	304570000	148080000	156500000	27142000	12440000	14702000	47467000	29765000	17702000	127850000	47361000	80490000	102110000	58513000	43601000	58820	5279	55428	358135;358136;358137;358138;358139	483460;483461;483462;483463;483464	483464			4	
YGLIPEEFFQFLYPK	1	Unmodified	1889.9604	0.9603736	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.35	6.24		8	4						5	2	4	5	6	102	99.414	2;3	1.265E-09	88866	160511_QHF_FH_JSI12i_2	167.18	150.65			0.82607	0.93096	36.975	17	11	Median	1.0886	0.92924	10.079	2	1	Median	0.66322	0.8048	13.449	4	3	Linear	1.0362	1.0628	30.809	5	3	Median	0.75509	0.79043	55.252	6	4	Median	1700700000	932710000	768030000	210720000	104100000	106630000	348590000	202930000	145660000	705610000	363150000	342470000	435820000	262540000	173270000	58821	1246	55429	358140;358141;358142;358143;358144;358145;358146;358147;358148;358149;358150;358151;358152;358153;358154;358155;358156	483465;483466;483467;483468;483469;483470;483471;483472;483473;483474;483475;483476;483477;483478;483479;483480;483481;483482;483483;483484;483485	483467			21	
YGLIYHASLVGQTSPK	1	Unmodified	1732.9148	0.91482039	5544	Q9Y2X3	NOP58	Nucleolar protein 58	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	4	4	4	4	59.649	54.356	2;3	5.4761E-43	29759	160513_QHF_FH_JSI10Kac_6	211.67	192.92			1.16	0.99943	27.952	13	2	Median	1.2535	1.0827	24.714	3	1	Median	0.73322	0.86454	7.3856	4	0	Median	1.2336	1.2134	2.8006	4	0	Linear	0.63461	0.65813	35.094	2	1	Median	1145500000	614090000	531410000	148540000	67594000	80946000	461310000	294440000	166870000	368720000	141640000	227080000	166930000	110420000	56519000	58822	5544	55430	358157;358158;358159;358160;358161;358162;358163;358164;358165;358166;358167;358168;358169;358170;358171;358172	483486;483487;483488;483489;483490;483491;483492;483493;483494;483495;483496;483497;483498;483499;483500;483501;483502;483503;483504;483505;483506;483507;483508;483509;483510	483509			25	
YGLLQVSEGLSFLHSSVK	1	Unmodified	1963.0415	0.041477469	3102	Q6P3W7	SCYL2	SCY1-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		99.171	99.021	3	6.7664E-06	82053	160511_QHF_FH_JSI10i_3	86.455	79.681			0.68386	0.76517	32.427	3	1	Median	1.0875	0.9135	NaN	1	0	Median	0.68386	0.76517	NaN	1	0	Median	0.50659	0.48707	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114390000	70699000	43690000	12249000	5684100	6565300	40151000	25610000	14540000	61989000	39404000	22585000	0	0	0	58823	3102	55431	358173;358174;358175	483511;483512;483513;483514	483513			4	
YGLNMCR	0	Unmodified	912.39459	0.39459221	1994	P62273	RPS29	40S ribosomal protein S29	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	27.035	26.423	2	0.0068249	22607	160511_QHF_FH_JSI11i_3	89.703	53.116			0.95704	1.045	24.224	6	0	Median	1.357	1.1776	NaN	1	0	Median	1.1046	1.3182	17.972	2	0	Median	0.92612	0.90734	5.0968	2	0	Median	0.78622	0.76602	NaN	1	0	Median	807450000	412110000	395340000	77907000	31746000	46161000	219300000	112780000	106520000	382300000	203140000	179160000	127950000	64447000	63499000	58824	1994	55432	358176;358177;358178;358179;358180;358181	483515;483516;483517;483518;483519;483520	483515			6	
YGLPVNFQAMLLQPNKK	2	Unmodified	1960.0604	0.060438772	1190	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	93.824	93.226	3	3.3686E-23	77842	160511_QHF_FH_JSI10i_3	180.97	161.71			0.90354	0.89038	20.662	5	2	Median	1.2366	0.99929	6.0649	2	2	Median	0.73578	0.89038	NaN	1	0	Median	0.90354	0.84004	NaN	1	0	Median	0.60869	0.60775	NaN	1	0	Median	472090000	232800000	239300000	180270000	76987000	103280000	88754000	51198000	37556000	98535000	47204000	51331000	104530000	57407000	47125000	58825	1190	55433	358182;358183;358184;358185;358186	483521;483522;483523;483524;483525;483526;483527;483528;483529;483530;483531;483532	483526			12	
YGLQDSDEEEEEHPSK	1	Unmodified	1890.7755	0.77554554	1790	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			22.54	22.264	3	0.00039019	19356	160511_QHF_FH_JSI10i_1	68.129	64.161			0.47667	0.52978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.47667	0.52978	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18980000	14872000	4107900	0	0	0	18980000	14872000	4107900	0	0	0	0	0	0	58826	1790	55434	358187	483533	483533			1	
YGLSAHPVAPQMFGYAGK	1	Unmodified	1892.9243	0.92433922	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6							2	2	2	3	66.027	65.293	2;3	1.845E-31	56417	160511_QHF_FH_JSI12i_3	140.96	131.78			0.89078	0.97274	26.609	8	3	Median	1.534	1.2876	0.76097	2	1	Median	0.79441	0.93645	16.327	2	1	Median	0.94179	0.94336	28.551	2	0	Median	0.712	0.73964	27.793	2	1	Median	1006400000	545930000	460430000	90932000	39474000	51458000	189380000	99993000	89391000	268370000	144820000	123550000	457670000	261640000	196030000	58827	1207	55435	358188;358189;358190;358191;358192;358193;358194;358195;358196	483534;483535;483536;483537;483538;483539;483540;483541;483542;483543;483544;483545	483543			11	
YGLSAHPVAPQMFGYAGK	1	Oxidation (M)	1908.9193	0.91925384	1207	P22307	SCP2	Non-specific lipid-transfer protein	yes	yes	0	0	1	0				By MS/MS	3	0			1										1	54.199	53.961	3	0.0015125	46306	160511_QHF_FH_JSI12i_3	54.237	50.334			1.3194	1.3541	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3194	1.3541	NaN	1	1	Median	41256000	22523000	18733000	0	0	0	0	0	0	0	0	0	41256000	22523000	18733000	58828	1207	55435	358197	483546	483546		832	1	
YGLSPGPVTESTRPVYLK	1	Unmodified	1963.0415	0.041477469	5538	Q9Y2U8	LEMD3	Inner nuclear membrane protein Man1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	59.594	58.732	3	2.7729E-05	48105	160511_QHF_FH_JSI9i_3	80.738	55.954			0.89048	1.052	36.59	6	2	Median	1.7372	1.4305	31.667	2	1	Median	0.88005	1.0522	11.831	2	0	Median	0.85033	0.79216	NaN	1	0	Median	0.58309	0.61222	NaN	1	1	Median	282770000	151830000	130930000	77310000	28846000	48464000	109760000	64876000	44881000	77588000	46222000	31366000	18112000	11890000	6221600	58829	5538	55436	358198;358199;358200;358201;358202;358203	483547;483548;483549;483550;483551;483552;483553;483554	483551			8	
YGLTLDPEADSEYLSR	0	Unmodified	1827.8527	0.85267365	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	77.923	77.386	2	0.0037986	70511	160511_QHF_FH_JSI12i_1	55.452	42.252			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58830	693	55437	358204	483555	483555			1	
YGLVFAGGASGLQIFPTK	1	Unmodified	1824.9774	0.97742065	1443	P35658	NUP214	Nuclear pore complex protein Nup214	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	8.57	6.43			4						3	2	2	1	2	96.613	93.286	2;3	6.448E-31	87691	160511_QHF_FH_JSI12i_3	188.4	163.55			1.0119	1.0119	38.427	7	1	Median	1.4122	1.1954	23.565	2	1	Median	0.85318	0.98642	24.08	2	0	Median	1.6273	1.5112	NaN	1	0	Median	0.59183	0.60194	18.216	2	0	Median	438030000	217030000	221000000	91409000	36340000	55069000	82822000	48959000	33863000	44778000	16456000	28322000	219020000	115270000	103750000	58831	1443	55438	358205;358206;358207;358208;358209;358210;358211	483556;483557;483558;483559;483560	483558			4	
YGLVGLEPTK	1	Unmodified	1075.5914	0.59136099	3795	Q8WW59	SPRYD4	SPRY domain-containing protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.67	0.471	1	2									1	2		52.6	52.188	2	0.0012922	45384	160511_QHF_FH_JSI11i_2	71.425	61.838			1.6913	1.6462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6913	1.6462	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	43188000	18914000	24274000	0	0	0	0	0	0	43188000	18914000	24274000	0	0	0	58832	3795	55439	358212;358213;358214	483561;483562;483563	483562			3	
YGLVGPNGK	1	Unmodified	903.48142	0.48141661	3634	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.288	24.029	2	0.0010523	20071	160511_QHF_FH_JSI12i_2	81.297	60.143			3.1925	3.659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.1925	3.659	NaN	1	1	Median	311460000	55859000	255600000	0	0	0	0	0	0	0	0	0	311460000	55859000	255600000	58833	3634	55440	358215	483564	483564			1	
YGMGTSVER	0	Unmodified	998.44913	0.4491302	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	19.224	18.458	2	0.0094798	15528	160511_QHF_FH_JSI9i_2	51.059	41.819			0.94959	1.0583	11.214	4	0	Median	1.2605	1.0699	NaN	1	0	Median	0.84754	1.0467	NaN	1	0	Median	1.0639	1.0866	NaN	1	0	Median	0.77137	0.85495	NaN	1	0	Median	937560000	472340000	465220000	165700000	71993000	93708000	208590000	108490000	100100000	386810000	183410000	203400000	176460000	108450000	68011000	58834	903	55441	358216;358217;358218;358219	483565;483566;483567;483568;483569	483566			5	
YGMGTSVER	0	Oxidation (M)	1014.444	0.44404482	903	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	19.186	18.428	2	0.019332	15544	160511_QHF_FH_JSI9i_2	47.198	28.467			0.93004	0.91586	41.359	3	0	Median	2.0334	1.7518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93004	0.91586	NaN	1	0	Median	0.75902	0.81197	NaN	1	0	Median	142580000	69544000	73038000	35733000	10816000	24917000	0	0	0	65302000	33914000	31388000	41548000	24814000	16733000	58835	903	55441	358220;358221;358222	483570	483570		482	1	
YGMHQNTLR	0	Unmodified	1118.5291	0.52911186	4021	Q96D46	NMD3	60S ribosomal export protein NMD3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			13.259	12.432	2;3	0.015643	9893	160511_QHF_FH_JSI10i_3	40.058	36.044			1.6005	1.5824	78.592	2	2	Median	3.2207	2.7584	NaN	1	1	Median	0.7954	0.90773	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	56929000	26596000	30333000	9005600	1515100	7490500	47923000	25081000	22842000	0	0	0	0	0	0	58836	4021	55442	358223;358224	483571;483572	483571			2	
YGMLLYQNYR	0	Unmodified	1319.6332	0.63324258	2387	Q13322	GRB10	Growth factor receptor-bound protein 10	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				67.988	59.279	2	0.0054039	31482	160513_QHF_FH_JSI9Kac_6	64.207	44.964			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58837	2387	55443	358225	483573	483573			1	
YGMMAQVTQTLK	1	Unmodified	1369.6734	0.67339283	43	CON__ENSEMBL:ENSBTAP00000032840			yes	yes	0	0	0	0		By MS/MS			3	0			1								1			61.512	59.988	2	0.0015084	50264	160511_QHF_FH_JSI10i_3	64.297	54.61		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58838	43	55444	358226	483574	483574			1	
YGMNPHQTPAQLYTLQPK	1	Oxidation (M)	2102.0255	0.025509829	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	1	0	By matching		By MS/MS	By MS/MS	2.4	0.49		3	2							1		2	2	47.987	47.344	3	3.137E-12	41548	160511_QHF_FH_JSI11i_3	150.45	146.6			0.99678	0.98732	24.225	5	0	Median	1.1244	0.98732	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.92885	0.90234	35.099	2	0	Median	0.78067	0.82316	29.722	2	0	Median	614920000	300740000	314180000	32343000	15442000	16901000	0	0	0	302220000	136140000	166070000	280360000	149150000	131200000	58839	1381	55445	358227;358228;358229;358230;358231	483575;483576;483577;483578;483579;483580;483581	483575		1017	7	
YGMNPHQTPAQLYTLQPK	1	Unmodified	2086.0306	0.030595207	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.5		4	6						6	4	3	5	4	59.882	56.306	2;3	7.8153E-24	49517	160511_QHF_FH_JSI9i_2	180.78	173.33			0.95867	0.97352	22.821	15	3	Median	1.2785	1.0712	18.877	3	1	Median	0.76825	0.94496	27.875	3	0	Median	1.0839	1.0968	13.432	5	2	Median	0.7929	0.81488	21.788	4	0	Median	4470800000	2166000000	2304800000	603260000	267080000	336180000	656260000	314430000	341830000	1676700000	803120000	873560000	1534600000	781350000	753230000	58840	1381	55445	358232;358233;358234;358235;358236;358237;358238;358239;358240;358241;358242;358243;358244;358245;358246;358247	483582;483583;483584;483585;483586;483587;483588;483589;483590;483591;483592;483593;483594;483595;483596;483597;483598;483599;483600;483601;483602;483603;483604;483605;483606;483607;483608;483609;483610;483611;483612;483613;483614;483615;483616;483617;483618	483600			37	
YGMPPQDAFTTQWLVR	0	Unmodified	1908.9193	0.91925384	2578	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									3	2	2	92.68	92.16	2	0.00027569	81701	160511_QHF_FH_JSI10i_2	85.845	72.182			0.843	0.93129	32.501	4	2	Median	NaN	NaN	NaN	0	0	Median	0.9345	1.1629	NaN	1	1	Median	0.9895	1.0092	42.776	2	1	Median	0.64782	0.70862	NaN	1	0	Median	92248000	55240000	37008000	0	0	0	19408000	12031000	7377000	51448000	27478000	23970000	21392000	15730000	5661700	58841	2578	55446	358248;358249;358250;358251;358252;358253;358254	483619;483620;483621;483622;483623;483624;483625;483626;483627	483625			9	
YGMSDVMPSGR	0	Unmodified	1198.5111	0.51107853	2555	Q14671	PUM1	Pumilio homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		43.498	42.774	2	0.022417	36694	160511_QHF_FH_JSI11i_2	41.399	30.248			0.65613	0.72165	3.9953	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62448	0.74232	NaN	1	1	Median	0.68939	0.70155	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45588000	30599000	14989000	0	0	0	17975000	12320000	5655200	27614000	18280000	9334000	0	0	0	58842	2555	55447	358255;358256	483628;483629	483628			2	
YGMSMYVLGMAEEFK	1	Unmodified	1754.7718	0.77178625	3175	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.097	84.117	2	2.2564E-53	48892	160513_QHF_FH_JSI10Kac_6	202.44	182.35			0.83152	1.3167	18.473	3	0	Plateau	1.531	1.3167	NaN	1	0	Median	0.81978	0.96038	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2692	1.3281	NaN	1	0	Median	158640000	68210000	90430000	39296000	15166000	24129000	70115000	30381000	39734000	0	0	0	49229000	22662000	26567000	58843	3175	55448	358257;358258;358259;358260	483630;483631;483632;483633;483634;483635	483634			6	
YGMSPPGSVADK	1	Unmodified	1207.5543	0.55432356	3960	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				33.569	32.314	2	0.042836	28121	160511_QHF_FH_JSI9i_1	45.368	33.52			0.069044	0.057019	NaN	1	1	Median	0.069044	0.057019	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	568740000	528550000	40186000	568740000	528550000	40186000	0	0	0	0	0	0	0	0	0	58844	3960	55449	358261	483636	483636			1	
YGMWHFLLGDK	1	Unmodified	1365.654	0.65397802	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.55	5.79			16						6	5	10	5	2	87.207	83.917	2;3	1.2192E-14	41951	160513_QHF_FH_JSI10Kac_6	152.81	139.46			0.97803	1.0403	27.991	16	4	Median	1.5326	1.3157	22.785	4	1	Median	0.88811	1.0681	28.185	7	2	Median	0.91937	0.88202	19.139	3	0	Plateau	0.67207	0.70833	22.006	2	1	Median	1050100000	542680000	507390000	247540000	112860000	134690000	540990000	285890000	255100000	149730000	76135000	73596000	111810000	67798000	44007000	58845	675	55450	358262;358263;358264;358265;358266;358267;358268;358269;358270;358271;358272;358273;358274;358275;358276;358277;358278;358279;358280;358281;358282;358283	483637;483638;483639;483640;483641;483642;483643;483644;483645;483646;483647;483648;483649;483650;483651;483652;483653;483654;483655;483656;483657;483658;483659;483660;483661	483659			25	
YGMWHFLLGDK	1	Oxidation (M)	1381.6489	0.64889264	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	77.216	68.095	3	0.0022968	36561	160513_QHF_FH_JSI9Kac_6	50.786	43.242			0.93787	1.1774	23.12	3	1	Plateau	1.6711	1.4044	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93787	0.90866	NaN	1	1	Median	0.92752	0.98716	NaN	1	0	Median	132050000	56626000	75424000	59426000	20716000	38711000	0	0	0	26832000	14990000	11842000	45792000	20920000	24872000	58846	675	55450	358284;358285;358286	483662;483663;483664;483665;483666	483664		234	5	
YGNANVWK	1	Unmodified	950.46102	0.46101552	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.7	6.78		5	1						4	2	2	2	4	31	26.902	2	0.0020172	23357	160511_QHF_FH_JSI9i_2	91.906	71.624			0.8614	0.874	47.392	10	1	Median	1.4299	1.236	50.82	2	0	Median	0.66216	0.8028	13.826	2	0	Median	1.1248	1.127	2.634	2	0	Median	0.7314	0.81306	60.898	4	1	Median	1524400000	796940000	727430000	277000000	113280000	163720000	373420000	197900000	175530000	508360000	268610000	239750000	365590000	217160000	148430000	58847	2014;2065	55451	358287;358288;358289;358290;358291;358292;358293;358294;358295;358296	483667;483668;483669;483670;483671;483672;483673;483674;483675	483670			9	
YGNQLVR	0	Unmodified	848.45045	0.45045083	1411	P33993	MCM7	DNA replication licensing factor MCM7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	1.75	0.433	1	3								1	1	1	1	16.382	15.726	2	0.014789	12722	160511_QHF_FH_JSI12i_2	65.672	45.826			0.65008	0.7054	22.931	4	0	Median	1.2185	1.0438	NaN	1	0	Median	0.54849	0.6823	NaN	1	0	Median	0.63821	0.61593	NaN	1	0	Median	0.66217	0.72928	NaN	1	0	Median	669600000	382330000	287270000	177650000	80483000	97167000	215390000	125810000	89578000	80181000	54809000	25372000	196380000	121230000	75151000	58848	1411	55452	358297;358298;358299;358300	483676;483677	483676			2	
YGPADVEDTTGSGATDSK	1	Unmodified	1769.7592	0.75916719	1245	P24534	EEF1B2	Elongation factor 1-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	3	1	1	33.448	32.844	2	3.6798E-07	29225	160511_QHF_FH_JSI10i_1	115.68	104.76			1.0182	1.0902	8.51	4	1	Median	1.404	1.1511	NaN	1	0	Median	0.92149	1.1101	NaN	1	1	Median	1.125	1.0706	NaN	1	0	Median	0.91093	0.94637	NaN	1	0	Median	288040000	127350000	160690000	72229000	33608000	38621000	79234000	34089000	45146000	72402000	24048000	48354000	64176000	35610000	28566000	58849	1245	55453	358301;358302;358303;358304;358305;358306	483678;483679;483680;483681;483682;483683;483684;483685;483686;483687	483684			10	
YGPDAFFNFPGK	1	Unmodified	1358.6295	0.62953741	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		83.253	82.649	2	0.0012092	72700	160511_QHF_FH_JSI11i_2	76.228	57.124			1.1258	1.1218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1258	1.1218	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51666000	24390000	27277000	0	0	0	0	0	0	51666000	24390000	27277000	0	0	0	58850	1718	55454	358307	483688	483688			1	
YGPFVADFADK	1	Unmodified	1228.5764	0.57643921	1246	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	4.21	3	4	1					1		2	2	3	2	69.017	67.119	2	0.00014821	58921	160511_QHF_FH_JSI11i_2	94.309	74.523			1.0127	0.96612	20.512	9	5	Median	1.1495	0.96509	0.15004	2	1	Median	0.94128	1.1334	21.692	2	1	Median	0.91632	0.90488	32.033	3	2	Median	0.8963	0.9622	22.18	2	1	Median	1147800000	550320000	597460000	217370000	100820000	116560000	327270000	153190000	174080000	336140000	154430000	181710000	267000000	141880000	125120000	58851	1246	55455	358308;358309;358310;358311;358312;358313;358314;358315;358316	483689;483690;483691;483692;483693;483694;483695;483696;483697;483698;483699;483700;483701;483702;483703;483704	483699			16	
YGPGEPSPVSETVVTPEAAPEK	1	Unmodified	2240.0849	0.084858426	1388	P32004	L1CAM	Neural cell adhesion molecule L1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	59.294	58.644	2	2.1852E-28	53084	160511_QHF_FH_JSI11i_1	173.36	161.74			1.0087	1.001	9.0838	4	0	Median	1.2374	1.0095	NaN	1	0	Median	0.75251	0.87117	NaN	1	0	Median	1.0956	1.0831	NaN	1	0	Median	0.92861	0.9925	NaN	1	0	Median	405850000	198060000	207790000	102080000	51375000	50708000	98382000	49412000	48970000	112810000	46684000	66124000	92575000	50587000	41988000	58852	1388	55456	358317;358318;358319;358320	483705;483706;483707;483708;483709;483710;483711;483712;483713	483706			9	
YGPIADVSIVYDQQSR	0	Unmodified	1809.8897	0.88972785	2044	P62995	TRA2B	Transformer-2 protein homolog beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	3	2	2	72.598	71.85	2;3	1.0673E-07	65304	160511_QHF_FH_JSI10i_1	138.24	122.85			1.3017	1.2445	39.988	7	6	Median	1.3017	1.1493	NaN	1	1	Median	1.0594	1.2445	47.054	3	3	Median	1.4626	1.439	NaN	1	1	Median	1.5846	1.7621	62.46	2	1	Median	381770000	145270000	236500000	28011000	12827000	15184000	194720000	77006000	117710000	48504000	17282000	31222000	110540000	38160000	72383000	58853	2044	55457	358321;358322;358323;358324;358325;358326;358327;358328	483714;483715;483716;483717;483718;483719;483720;483721	483718			7	
YGPIVDVYVPLDFYTR	0	Unmodified	1915.972	0.97200092	535	O75494	SRSF10	Serine/arginine-rich splicing factor 10	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.67	101.49	2	2.4114E-06	87443	160511_QHF_FH_JSI12i_2	137.89	123.66			1.2907	1.4258	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2907	1.4258	NaN	1	1	Median	126740000	48782000	77956000	0	0	0	0	0	0	0	0	0	126740000	48782000	77956000	58854	535	55458	358329	483722	483722			1	
YGPLPGPAVPR	0	Unmodified	1122.6186	0.61857879	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By matching			By MS/MS	2	0		2								1			1	52.751	51.536	2	0.062023	44175	160511_QHF_FH_JSI12i_2	33.263	25.695			1.1571	1.1504	30.325	2	0	Median	1.6393	1.4256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81676	0.92839	NaN	1	0	Median	93851000	46834000	47017000	42409000	16906000	25503000	0	0	0	0	0	0	51442000	29928000	21514000	58855	235	55459	358330;358331	483723	483723			1	
YGPLSELHYPIDSLTK	1	Unmodified	1831.9356	0.93561541	5621	Q9Y4C8	RBM19	Probable RNA-binding protein 19	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.762	80.142	3	0.022408	70465	160511_QHF_FH_JSI11i_2	31.876	21.021			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58856	5621	55460	358332	483724	483724			1	
YGPLSGVNVVYDQR	0	Unmodified	1565.7838	0.78380622	2447	Q13595	TRA2A	Transformer-2 protein homolog alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4	4.93	1	4						1		1	1	3	1	64.08	63.269	2	1.0832E-09	54931	160511_QHF_FH_JSI11i_2	145.31	134.15			0.93193	0.99511	13.026	5	0	Median	1.2488	1.1099	NaN	1	0	Median	0.84786	1.0536	NaN	1	0	Median	0.96377	0.94062	7.9646	2	0	Median	0.73657	0.80487	NaN	1	0	Median	315050000	161780000	153280000	48362000	21724000	26638000	60316000	32729000	27586000	126090000	61345000	64741000	80291000	45980000	34311000	58857	2447	55461	358333;358334;358335;358336;358337;358338	483725;483726;483727;483728;483729;483730;483731;483732;483733	483729			9	
YGPPPSYPNLK	1	Unmodified	1231.6237	0.62372375	2412	Q13435	SF3B2	Splicing factor 3B subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	43.884	42.787	2	0.00024695	37562	160511_QHF_FH_JSI9i_2	78.934	67.087			0.87806	0.87226	16.881	5	1	Median	1.2821	1.0815	11.482	2	1	Median	0.62351	0.76627	NaN	1	0	Median	0.87806	0.87226	NaN	1	0	Median	0.74016	0.82336	NaN	1	0	Median	388150000	197900000	190250000	104010000	45091000	58916000	82714000	40677000	42038000	102130000	54739000	47395000	99292000	57390000	41902000	58858	2412	55462	358339;358340;358341;358342;358343;358344	483734;483735;483736;483737;483738;483739;483740;483741;483742;483743;483744;483745;483746	483741			13	
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	1	Oxidation (M)	3799.7981	0.79808266	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			2									1	1	75.575	75.432	4	2.4696E-07	65349	160511_QHF_FH_JSI12i_3	46.898	42.624			0.8905	0.88426	38.172	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2419	1.1582	NaN	1	0	Median	0.6385	0.67508	NaN	1	0	Median	96862000	53207000	43655000	0	0	0	0	0	0	38241000	14329000	23913000	58621000	38879000	19742000	58859	1063	55463	358345;358346	483747;483748;483749	483748		702	3	
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	1	Unmodified	3783.8032	0.80316804	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0			By MS/MS	By MS/MS	5	4.93		1	4						1			2	4	83.12	81.306	4	1.0919E-46	73967	160511_QHF_FH_JSI11i_3	150.8	146.36			0.68848	0.7341	20.49	6	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0182	0.96807	12.848	2	1	Median	0.62376	0.68418	10.232	4	2	Median	688160000	407950000	280220000	0	0	0	0	0	0	528270000	308130000	220140000	159900000	99819000	60079000	58860	1063	55463	358347;358348;358349;358350;358351;358352	483750;483751;483752;483753;483754;483755;483756;483757;483758;483759;483760;483761;483762;483763	483752			14	
YGPSLMPGGNK	1	Unmodified	1119.5383	0.53827956	1764	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							2	3	2	3	40.046	39.242	2	5.1992E-07	33172	160511_QHF_FH_JSI12i_3	114.89	91.466			1.0295	1.1545	21.814	10	0	Median	1.4638	1.2211	3.3685	2	0	Median	0.91086	1.1261	22.56	3	0	Median	1.0683	1.066	18.247	2	0	Median	0.80472	0.8912	27.818	3	0	Median	2823500000	1417000000	1406500000	438750000	194020000	244730000	585340000	301300000	284040000	989040000	487820000	501220000	810350000	433850000	376500000	58861	1764	55464	358353;358354;358355;358356;358357;358358;358359;358360;358361;358362	483764;483765;483766;483767;483768;483769;483770;483771;483772;483773;483774;483775;483776;483777;483778;483779;483780;483781;483782;483783;483784;483785;483786;483787	483786			24	
YGPVFSFTMVGK	1	Unmodified	1331.6584	0.6583947	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			3						2	1	1	1	2	84.432	80.15	2	1.2454E-06	39591	160513_QHF_FH_JSI12Kac_6	119.16	98.852			0.95222	0.98325	10.873	5	2	Median	1.4158	1.1819	NaN	1	0	Median	0.80053	0.91581	NaN	1	0	Median	1.1741	1.1384	NaN	1	0	Median	0.94208	0.98147	0.2567	2	2	Median	411840000	212660000	199170000	33477000	11279000	22198000	60446000	39490000	20956000	100950000	55796000	45151000	216970000	106100000	110870000	58862	2771	55465	358363;358364;358365;358366;358367	483788;483789;483790;483791;483792;483793;483794;483795;483796	483796			8	
YGPVFSFTMVGK	1	Oxidation (M)	1347.6533	0.65330932	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				77.722	69.105	2	0.0046752	37231	160513_QHF_FH_JSI9Kac_6	79.16	60.849			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58863	2771	55465	358368	483797	483797		2135	1	
YGQGAGEGSTR	0	Unmodified	1081.4789	0.47885043	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	5.6756	5.4459	2	0.00038842	3416	160511_QHF_FH_JSI10i_1	72.325	50.554			0.69732	0.78095	8.6473	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69732	0.83593	NaN	1	0	Median	0.77652	0.72959	NaN	1	0	Median	0.67393	0.71198	NaN	1	0	Median	211020000	122920000	88098000	0	0	0	78117000	50496000	27621000	71523000	37309000	34214000	61380000	35117000	26262000	58864	4581	55466	358369;358370;358371;358372	483798;483799;483800;483801	483800			4	
YGQGFYLISPSEFER	0	Unmodified	1791.8468	0.84680041	3093	Q6P1M3	LLGL2	Lethal(2) giant larvae protein homolog 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		90.43	89.913	2	0.0060447	78943	160511_QHF_FH_JSI11i_2	61.435	54.462			2.2132	2.164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2132	2.164	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10712000	2909100	7802900	0	0	0	0	0	0	10712000	2909100	7802900	0	0	0	58865	3093	55467	358373	483802	483802			1	
YGQHPNIITLK	1	Unmodified	1282.7034	0.70337105	2669;1755	Q15418;P51812;Q15349;Q9UK32	RPS6KA1;RPS6KA3;RPS6KA2;RPS6KA6	Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		4	8							1	5	4	2	39.996	39.303	2;3	1.4863E-05	34637	160511_QHF_FH_JSI9i_2	93.345	67.228			0.82257	0.86454	41.076	12	7	Median	1.3322	1.1366	NaN	1	0	Median	0.65888	0.81844	48.475	5	5	Median	0.89536	0.88876	50.181	4	2	Median	0.79421	0.81401	12.371	2	0	Median	1838200000	922660000	915540000	113120000	49704000	63416000	419700000	248120000	171570000	669350000	279380000	389970000	636040000	345460000	290590000	58866	2669;1755	55468	358374;358375;358376;358377;358378;358379;358380;358381;358382;358383;358384;358385	483803;483804;483805;483806;483807;483808;483809;483810;483811;483812;483813;483814;483815;483816;483817;483818;483819;483820;483821;483822	483811			20	
YGQHPPDAVDEPQMLTNEK	1	Unmodified	2167.9844	0.98443288	1273	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	47.362	46.528	3	2.712E-08	40058	160511_QHF_FH_JSI11i_2	105.67	102.85			1.0175	1.254	24.699	5	0	Median	1.5138	1.2675	NaN	1	0	Median	1.0175	1.2625	NaN	1	0	Median	1.2197	1.254	NaN	1	0	Median	0.77759	0.81866	14.05	2	0	Median	319010000	150200000	168810000	62330000	25553000	36777000	68924000	30927000	37997000	93831000	40578000	53253000	93927000	53140000	40787000	58867	1273	55469	358386;358387;358388;358389;358390	483823;483824;483825;483826;483827;483828;483829;483830;483831;483832;483833;483834;483835	483830			12	
YGQISEVVVVK	1	Unmodified	1219.6812	0.68123863	2486	Q14011	CIRBP	Cold-inducible RNA-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.55	0.498	5	6								2	3	3	3	54.489	53.781	2	0.00012811	47533	160511_QHF_FH_JSI10i_2	96.113	65.427			1.1289	1.1502	42.41	9	8	Median	1.7355	1.4639	NaN	1	1	Median	0.73684	0.88411	45.13	3	3	Median	1.3488	1.329	20.432	2	2	Median	0.57584	0.63968	43.182	3	2	Median	819320000	437430000	381890000	61360000	24356000	37004000	321890000	177330000	144560000	200050000	94889000	105160000	236020000	140850000	95171000	58868	2486	55470	358391;358392;358393;358394;358395;358396;358397;358398;358399;358400;358401	483836;483837;483838;483839;483840;483841;483842;483843;483844;483845;483846;483847	483847			12	
YGQLIEINSHSLFSK	1	Unmodified	1734.8941	0.89408495	2692	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.69	4.84		4	7						2	3	3	4	3	74.067	72.041	2;3	3.5737E-22	63167	160511_QHF_FH_JSI12i_3	177.88	166.24			0.80576	0.85761	30.259	13	1	Median	1.3796	1.1794	32.263	3	1	Median	0.79814	0.93948	7.6599	3	0	Median	0.88315	0.83482	18.184	4	0	Median	0.59954	0.59962	11.304	3	0	Median	2923800000	1362400000	1561400000	484390000	159120000	325270000	425660000	253530000	172130000	1075900000	376110000	699770000	937840000	573590000	364260000	58869	2692	55471	358402;358403;358404;358405;358406;358407;358408;358409;358410;358411;358412;358413;358414	483848;483849;483850;483851;483852;483853;483854;483855;483856;483857;483858;483859;483860;483861;483862;483863;483864;483865;483866;483867;483868;483869;483870;483871;483872;483873;483874;483875	483873			28	
YGQLSEK	1	Unmodified	823.40758	0.40758296	196	O14737	PDCD5	Programmed cell death protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1.25	0.433	3	1								1	2		1	11.934	11.424	2	0.021461	9144	160511_QHF_FH_JSI10i_2	56.547	34.844			0.89519	1.0064	26.386	4	1	Median	1.3683	1.1122	NaN	1	0	Median	0.89519	1.0889	25.268	2	1	Median	NaN	NaN	NaN	0	0	Median	0.67444	0.70677	NaN	1	0	Median	1063100000	531280000	531860000	225560000	95592000	129970000	532550000	254610000	277940000	0	0	0	305030000	181080000	123950000	58870	196	55472	358415;358416;358417;358418	483876;483877	483877			2	
YGQNGDFTR	0	Unmodified	1056.4625	0.46247208	602	O76094	SRP72	Signal recognition particle subunit SRP72	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	15.927	15.086	2	0.0031278	12191	160511_QHF_FH_JSI12i_2	61.679	50.969			0.9943	0.96104	74.677	2	1	Median	1.9033	1.6296	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51944	0.56678	NaN	1	0	Median	60127000	31266000	28861000	21085000	6802100	14283000	0	0	0	0	0	0	39043000	24464000	14579000	58871	602	55473	358419;358420	483878;483879;483880	483878			3	
YGREEMLALFLK	1	Unmodified	1468.7748	0.77482144	3172	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS		By MS/MS		3	0			2							1		1		86.346	85.747	3	0.0011881	70719	160511_QHF_FH_JSI9i_3	65.179	57.635			0.83563	0.74208	160.46	2	2	Median	2.761	2.3078	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.25291	0.23861	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26210000	13287000	12923000	14292000	4590900	9701200	0	0	0	11918000	8695900	3221800	0	0	0	58872	3172	55474	358421;358422	483881;483882	483882			2	
YGSDIVPFSK	1	Unmodified	1111.555	0.55497548	1024	P13010	XRCC5	X-ray repair cross-complementing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	5.84	1	4	1				2	1		2	4	1	2	58.006	53.464	2	0.00030866	46377	160511_QHF_FH_JSI11i_2	78.556	64.838			1.0358	1.1893	88.786	8	1	Median	1.5498	1.3261	22.749	2	1	Median	1.0445	4.1355	137.35	3	0	Plateau	1.0135	1.0241	NaN	1	0	Median	0.88687	0.96477	5.9689	2	0	Median	6641700000	1540700000	5101100000	514550000	206170000	308390000	4645700000	659580000	3986100000	875810000	383540000	492270000	605700000	291380000	314320000	58873	1024	55475	358423;358424;358425;358426;358427;358428;358429;358430;358431	483883;483884;483885;483886;483887;483888;483889;483890;483891;483892;483893;483894	483890			12	
YGSGSGQQSVTGVEASDDANSYWR	0	Unmodified	2520.0789	0.078938201	4862	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										3	1	1	55.345	54.879	2;3	8.6579E-125	49800	160511_QHF_FH_JSI12i_1	274.23	263.88			1.0828	1.0676	4.0895	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.88702	1.0458	4.9654	2	1	Median	1.1314	1.1105	NaN	1	0	Median	0.97557	1.0522	NaN	1	0	Median	154970000	78756000	76216000	0	0	0	73184000	37020000	36164000	45115000	18226000	26889000	36673000	23511000	13162000	58874	4862	55476	358432;358433;358434;358435;358436	483895;483896;483897;483898;483899;483900;483901;483902;483903	483898			9	
YGSGSGQQSVTGVTSVDDSNSYWR	0	Unmodified	2536.1102	0.11023833	4273	Q99470	SDF2	Stromal cell-derived factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	1	2	2	59.614	58.972	2;3	6.601E-31	52341	160511_QHF_FH_JSI9i_1	168.32	161.75			0.85549	1.006	32.923	3	3	Median	1.7392	1.4609	NaN	1	1	Median	0.85549	1.006	NaN	1	1	Median	0.77876	0.75777	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	40350000	24137000	16213000	9234200	2661300	6572900	16483000	10770000	5712900	14632000	10705000	3927300	0	0	0	58875	4273	55477	358437;358438;358439;358440;358441;358442	483904;483905;483906;483907;483908;483909	483909			6	
YGSGVLPDAPK	1	Unmodified	1102.5659	0.56587452	3839	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	39.176	38.55	2	0.00026485	35175	160511_QHF_FH_JSI12i_1	78.098	64.102			0.74791	0.67693	29.984	4	1	Linear	1.4319	1.1598	NaN	1	1	Median	0.72868	0.87417	NaN	1	0	Median	0.57857	0.56146	NaN	1	0	Median	0.76764	0.78423	NaN	1	0	Median	247200000	134150000	113050000	38687000	15130000	23556000	64538000	38184000	26354000	74128000	41872000	32256000	69844000	38962000	30882000	58876	3839	55478	358443;358444;358445;358446	483910;483911;483912;483913;483914;483915;483916	483913			7	
YGSPGNVSK	1	Unmodified	907.43995	0.43994572	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	2	1	2	9.951	9.5715	2	0.0027755	7073	160511_QHF_FH_JSI11i_2	63.216	27.031			1.1244	1.0446	24.961	5	3	Median	1.2553	1.0446	NaN	1	1	Median	1.1244	1.3707	NaN	1	1	Median	1.2475	1.2682	NaN	1	0	Median	0.70314	0.80515	5.3061	2	1	Median	647990000	353210000	294780000	46052000	16446000	29606000	201360000	99689000	101670000	164710000	83662000	81052000	235860000	153410000	82449000	58877	686	55479	358447;358448;358449;358450;358451;358452	483917;483918;483919;483920;483921;483922;483923;483924	483921			8	
YGSPYPWPLNHILAYQK	1	Unmodified	2046.0363	0.036332512	524	O75431	MTX2	Metaxin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	6.55	5.79			8						3		1	5	5	92.274	89.562	3	2.4446E-24	44227	160513_QHF_FH_JSI10Kac_6	155.92	146.64			0.86633	0.86517	32.17	9	3	Median	NaN	NaN	NaN	0	0	Median	0.98503	1.1391	NaN	1	0	Median	1.0171	0.92759	44.062	4	1	Median	0.82431	0.83821	21.742	4	2	Median	536450000	266200000	270250000	0	0	0	179040000	94023000	85015000	155750000	77975000	77775000	201660000	94203000	107460000	58878	524	55480	358453;358454;358455;358456;358457;358458;358459;358460;358461;358462;358463	483925;483926;483927;483928;483929;483930;483931;483932;483933;483934;483935;483936;483937;483938;483939	483938			14	
YGSVAFPNFEQGVACLR	0	Unmodified	1913.9094	0.90941744	93	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	89.409	88.758	2	0.0006942	78805	160511_QHF_FH_JSI10i_2	74.76	60.502			0.79088	0.77684	14.98	3	3	Median	NaN	NaN	NaN	0	0	Median	0.60339	0.71845	NaN	1	1	Median	0.79088	0.77684	NaN	1	1	Median	0.89423	0.95972	NaN	1	1	Median	46090000	24307000	21782000	0	0	0	15320000	9785400	5534700	18023000	10305000	7718100	12747000	4217000	8529600	58879	93	55481	358464;358465;358466;358467	483940;483941;483942;483943;483944	483943			5	
YGSVIQLLHMK	1	Unmodified	1287.7009	0.70092821	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			6						2	2	2	3	1	71.881	69.875	2;3	5.6081E-06	59131	160511_QHF_FH_JSI10i_3	88.441	81.553			1.1857	1.1445	41.995	7	3	Median	1.6094	1.3178	11.069	2	1	Median	0.79741	0.92442	NaN	1	0	Median	1.1857	1.1445	60.861	3	2	Median	0.68493	0.70235	NaN	1	0	Median	805100000	472110000	332990000	166590000	73558000	93027000	117940000	65374000	52565000	334010000	218060000	115950000	186560000	115120000	71446000	58880	2547	55482	358468;358469;358470;358471;358472;358473;358474;358475	483945;483946;483947;483948;483949;483950;483951;483952;483953;483954;483955;483956;483957;483958	483950			14	
YGSVTVWR	0	Unmodified	966.49232	0.49231565	1912	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	50.076	40.757	2	0.0052731	22410	160513_QHF_FH_JSI10Kac_6	78.324	59.945			0.88072	0.8726	16.617	4	0	Median	1.0802	0.92279	NaN	1	0	Median	0.71811	0.82513	NaN	1	0	Median	1.135	1.0822	NaN	1	0	Median	0.67492	0.73251	NaN	1	0	Median	98414000	58343000	40070000	11495000	6627400	4867300	60174000	37578000	22596000	18291000	9561700	8729500	8453800	4576300	3877500	58881	1912	55483	358476;358477;358478;358479	483959;483960;483961;483962	483961			4	
YGSYNVFWTSNPGLPLLTEMVK	1	Unmodified	2515.2457	0.24573294	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0			By MS/MS	By matching	16	0									2			1	1	97.895	88.468	3	6.1276E-05	50584	160513_QHF_FH_JSI11Kac_6	62.611	59.017			0.94157	0.95785	20.174	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1445	1.1047	NaN	1	0	Median	0.7746	0.83051	NaN	1	0	Median	140500000	66497000	74000000	0	0	0	0	0	0	84297000	38003000	46294000	56199000	28493000	27706000	58882	2466	55484	358480;358481	483963	483963			1	
YGTCPHGGYGLGLER	0	Unmodified	1635.7464	0.74637486	375	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.2		4	5						2	1	2	4	4	40.878	38.602	2;3	1.6418E-05	32667	160511_QHF_FH_JSI12i_3	115.09	107.72			0.9195	1.009	24.541	11	1	Median	1.9248	1.6301	NaN	1	0	Median	1.057	1.2467	18.154	2	0	Median	0.86602	0.8539	19.935	4	0	Median	0.94717	0.99047	14.055	4	1	Median	1523100000	813440000	709660000	61014000	17086000	43928000	246310000	137590000	108720000	652590000	381840000	270750000	563200000	276920000	286270000	58883	375	55485	358482;358483;358484;358485;358486;358487;358488;358489;358490;358491;358492	483964;483965;483966;483967;483968;483969;483970;483971;483972;483973;483974;483975;483976;483977;483978	483975			15	
YGTFMAPDLFGSK	1	Unmodified	1432.6697	0.66968766	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.5	4.2	1	6	2						1	3	1	4	2	84.843	83.307	2	8.6478E-06	75162	160511_QHF_FH_JSI11i_3	131.43	94.321			0.61459	0.57814	67.266	10	9	Median	0.72904	0.62791	42.805	3	2	Median	0.41181	0.50813	NaN	1	1	Median	0.68595	0.66348	92.492	4	4	Median	0.36827	0.41321	4.0508	2	2	Median	2409600000	1519400000	890120000	584750000	322460000	262280000	352110000	231700000	120410000	677220000	375420000	301790000	795490000	589850000	205640000	58884	1604	55486	358493;358494;358495;358496;358497;358498;358499;358500;358501;358502	483979;483980;483981;483982;483983;483984;483985;483986;483987;483988;483989;483990;483991	483979			13	
YGTFMAPDLFGSK	1	Oxidation (M)	1448.6646	0.66460229	1604	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	yes	yes	0	0	1	0		By MS/MS			2	0		1									1			77.587	76.856	2	0.011596	68370	160511_QHF_FH_JSI10i_2	54.471	47.618			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58885	1604	55486	358503	483992	483992		1283	1	
YGTPEELQELVDTAHSMGIIVLLDVVHSHASK	1	Unmodified	3487.7657	0.7657199	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	2	1		1	99.093	90.735	5	2.6846E-79	54531	160513_QHF_FH_JSI10Kac_6	200.79	190.28			0.78922	0.79613	28.333	4	2	Median	0.99932	0.85464	22.48	2	2	Median	0.72271	0.8694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.49499	0.51954	NaN	1	0	Median	750370000	405560000	344800000	241650000	122500000	119150000	299170000	150840000	148320000	0	0	0	209550000	132220000	77331000	58886	2216	55487	358504;358505;358506;358507	483993;483994;483995;483996;483997	483997			5	
YGTVSSIAQLHVR	0	Unmodified	1429.7678	0.76776222	3306	Q86TC9	MYPN	Myopalladin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			3						3	3	2	1		54.656	48.544	3	2.2332E-11	40634	160511_QHF_FH_JSI10i_3	124.12	117.26			0.96715	0.8571	20.903	5	2	Median	1.1908	1.0096	23.154	2	1	Median	0.631	0.74339	15.312	2	0	Median	0.96715	0.93014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	217360000	110400000	106960000	95938000	41312000	54626000	110510000	63683000	46831000	10906000	5405500	5500300	0	0	0	58887	3306	55488	358508;358509;358510;358511;358512;358513	483998;483999;484000;484001;484002;484003;484004;484005;484006	483999			9	
YGVAWEKYCQR	1	Acetyl (K)	1500.682	0.68198369	2571	Q14739	LBR	Lamin-B receptor	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	63.48	54.085	2	3.4583E-11	29793	160513_QHF_FH_JSI10Kac_6	138.66	111.99			1.0093	0.9909	261.41	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0093	0.9909	261.41	2	2	Median	NaN	NaN	NaN	0	0	Median	43470000	32193000	11276000	0	0	0	14265000	14265000	0	25090000	13814000	11276000	4114300	4114300	0	58888	2571	55489	358514;358515;358516;358517	484007;484008;484009;484010	484010	2544		4	
YGVFPLR	0	Unmodified	850.47012	0.47012364	999;2197	P11388;Q02880	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	2	1	55.274	54.57	2	0.0045813	46641	160511_QHF_FH_JSI12i_3	98.03	70.714			1.0224	1.059	16.435	6	3	Median	1.4965	1.2584	NaN	1	0	Median	0.76791	0.91181	4.6921	2	2	Median	1.2425	1.1933	0.4273	2	1	Median	0.8777	0.88949	NaN	1	0	Median	761770000	397580000	364180000	64603000	28483000	36120000	236460000	138910000	97556000	271230000	131420000	139820000	189470000	98777000	90690000	58889	999;2197	55490	358518;358519;358520;358521;358522;358523	484011;484012;484013;484014;484015;484016;484017;484018	484017			8	
YGVGFWK	1	Unmodified	855.42792	0.42792448	4315	Q99798	ACO2	Aconitate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							2	2	1	2	55.533	54.51	2	0.011089	44754	160511_QHF_FH_JSI9i_3	72.021	56.581			0.90451	0.92814	25.626	7	0	Median	1.602	1.3165	13.674	2	0	Median	0.91297	1.0909	24.585	2	0	Median	0.90451	0.92814	NaN	1	0	Median	0.74165	0.78885	18.665	2	0	Median	1431100000	721850000	709240000	312420000	117260000	195170000	434660000	216790000	217870000	157440000	71695000	85741000	526570000	316110000	210460000	58890	4315	55491	358524;358525;358526;358527;358528;358529;358530	484019;484020;484021;484022;484023;484024;484025;484026;484027	484023			9	
YGVIILDEAHER	0	Unmodified	1413.7252	0.72522871	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.59		8						6	7	5	6	6	4	57.301	51.408	2;3	9.1531E-25	28063	160513_QHF_FH_JSI10Kac_6	147.26	126.03			1.0097	1.1688	39.089	18	4	Median	1.6579	1.3629	31.145	4	1	Median	0.99867	1.2365	9.6403	5	0	Median	1.1341	1.1367	27.719	5	1	Median	0.73814	0.80455	46.007	4	2	Median	1938500000	905630000	1032800000	254680000	86128000	168550000	599320000	291310000	308010000	715070000	298560000	416500000	369400000	229630000	139770000	58891	300	55492	358531;358532;358533;358534;358535;358536;358537;358538;358539;358540;358541;358542;358543;358544;358545;358546;358547;358548;358549;358550;358551	484028;484029;484030;484031;484032;484033;484034;484035;484036;484037;484038;484039;484040;484041;484042;484043;484044;484045;484046;484047;484048	484047			20	
YGVIIVGNPK	1	Unmodified	1058.6124	0.61243078	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.9	6.17	1	4				1	2	4	4	3	4	4	5	55.698	48.468	2	2.2186E-12	24530	160513_QHF_FH_JSI10Kac_5	157.52	122.71			0.95865	1.0345	32.522	16	2	Median	1.2862	1.114	4.4673	3	0	Plateau	0.83723	1.0042	12.669	4	0	Median	1.0933	1.0542	12.207	4	0	Median	0.70381	0.77056	43.468	5	2	Median	842940000	422480000	420470000	170170000	64131000	106040000	240550000	128260000	112290000	263960000	132720000	131250000	168260000	97376000	70884000	58892	3904	55493	358552;358553;358554;358555;358556;358557;358558;358559;358560;358561;358562;358563;358564;358565;358566;358567	484049;484050;484051;484052;484053;484054;484055;484056;484057;484058;484059;484060;484061;484062;484063;484064;484065;484066;484067;484068;484069;484070;484071;484072;484073;484074	484069			25	
YGVNPGPIVGTTR	0	Unmodified	1329.7041	0.70409934	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.96	6.41	6	4	4				3	4	2	5	6	6	6	49.677	44.951	2	1.6188E-22	39531	160511_QHF_FH_JSI9i_2	180.07	165.86			0.84638	0.92369	23.438	19	5	Median	1.3142	1.1008	37.008	4	1	Median	0.77943	0.92369	9.7704	5	2	Median	1.0219	1.0263	12.309	5	1	Median	0.71628	0.77856	18.595	5	1	Median	3456600000	1819700000	1636900000	767330000	375420000	391910000	729090000	407930000	321150000	1165700000	547190000	618540000	794450000	489170000	305280000	58893	1526;1527	55494	358568;358569;358570;358571;358572;358573;358574;358575;358576;358577;358578;358579;358580;358581;358582;358583;358584;358585;358586;358587;358588;358589;358590	484075;484076;484077;484078;484079;484080;484081;484082;484083;484084;484085;484086;484087;484088;484089;484090;484091;484092;484093;484094;484095;484096;484097;484098;484099;484100;484101;484102;484103;484104;484105;484106;484107	484094			33	
YGVNPGPIVGTTRK	1	Unmodified	1457.7991	0.79906235	1526;1527	P42166;P42167	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching		2.4	0.49		3	2							2	2	1		37.565	36.487	3	5.1015E-05	29645	160511_QHF_FH_JSI9i_3	89.26	74.16			0.67303	1.2237	43.411	5	0	Linear	0.98753	0.83504	51.892	2	0	Median	0.7311	0.87213	50.817	2	0	Median	0.5022	0.50251	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	364610000	208710000	155900000	144150000	69751000	74401000	186680000	119610000	67069000	33778000	19351000	14427000	0	0	0	58894	1526;1527	55495	358591;358592;358593;358594;358595	484108;484109;484110;484111;484112;484113	484112			6	
YGVQADRVDK	1	Unmodified	1149.5778	0.57783619	2522	Q14247	CTTN	Src substrate cortactin	yes	yes	0	0	0	1	By MS/MS				2	0		1								1				14.781	14.064	2	0.060704	11542	160511_QHF_FH_JSI9i_2	69.825	56.317			0.80783	0.70581	NaN	1	1	Median	0.80783	0.70581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42044000	22980000	19064000	42044000	22980000	19064000	0	0	0	0	0	0	0	0	0	58895	2522	55496	358596	484114	484114			1	
YGVSGYPTLK	1	Unmodified	1083.5601	0.56006086	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.3	6.63	4	4	4				2	5	4	5	6	6	6	49.14	43.847	2	1.9974E-10	24098	160513_QHF_FH_JSI11Kac_5	135.79	110.87			1.0035	0.99355	12.024	23	2	Median	1.2021	0.99646	11.053	5	0	Median	0.77739	0.92895	11.671	6	0	Median	1.0504	1.0238	10.68	6	2	Median	0.85476	0.92756	9.2742	6	0	Median	14542000000	7135800000	7406500000	2822000000	1107700000	1714400000	3702200000	2020100000	1682100000	4971300000	2207100000	2764200000	3046700000	1800900000	1245800000	58896	1344	55497	358597;358598;358599;358600;358601;358602;358603;358604;358605;358606;358607;358608;358609;358610;358611;358612;358613;358614;358615;358616;358617;358618;358619	484115;484116;484117;484118;484119;484120;484121;484122;484123;484124;484125;484126;484127;484128;484129;484130;484131;484132;484133;484134;484135;484136;484137;484138;484139;484140;484141;484142;484143;484144;484145;484146;484147;484148;484149;484150;484151;484152;484153;484154;484155;484156;484157;484158;484159;484160;484161	484147			47	
YGVSGYPTLKIFR	1	Acetyl (K)	1541.8242	0.82421447	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		84.554	75.237	2	0.002518	41642	160513_QHF_FH_JSI11Kac_6	77.305	61.734			0.27027	0.26461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27027	0.26461	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41403000	30031000	11372000	0	0	0	0	0	0	41403000	30031000	11372000	0	0	0	58897	1344	55498	358620	484162	484162	1277		1	
YGWHPATVCK	1	Unmodified	1217.5652	0.56516301	2709;2124	Q15796;P84022	SMAD2;SMAD3	Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3	no	no	0	0	0	0				By MS/MS	3	0			1										1	27.416	27.379	3	0.00098501	22876	160511_QHF_FH_JSI12i_3	65.719	60.825			0.69456	0.70103	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.69456	0.70103	NaN	1	1	Median	55145000	30835000	24310000	0	0	0	0	0	0	0	0	0	55145000	30835000	24310000	58898	2709;2124	55499	358621	484163	484163			1	
YGWLAAPQAYVSEK	1	Unmodified	1581.7827	0.78274359	2216	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.687	1	3	2							1	1	3	1	73.622	73.151	2	0.00010719	64524	160511_QHF_FH_JSI9i_2	113.63	90.75			0.93144	0.94471	14.736	6	1	Median	1.2008	1.0302	NaN	1	1	Median	0.74981	0.92558	NaN	1	0	Median	0.94033	0.96424	19.35	3	0	Median	0.85126	0.84819	NaN	1	0	Median	301880000	148830000	153050000	38819000	17874000	20946000	86888000	48006000	38882000	148160000	70471000	77685000	28021000	12481000	15540000	58899	2216	55500	358622;358623;358624;358625;358626;358627	484164;484165;484166;484167;484168;484169;484170;484171;484172	484166			9	
YGWSADESGQIFICSQEESIKPK	2	Unmodified	2658.2272	0.22718234	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	1			By matching	By MS/MS	3	0			2									1	1	75.196	75.053	3	2.4344E-08	65092	160511_QHF_FH_JSI12i_3	82.635	75.76			0.98202	0.97644	22.398	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.199	1.144	NaN	1	0	Median	0.80428	0.83341	NaN	1	0	Median	75681000	41424000	34257000	0	0	0	0	0	0	36551000	16918000	19633000	39130000	24506000	14624000	58900	5247	55501	358628;358629	484173	484173			1	
YGYEIPVDMLCK	1	Unmodified	1486.6836	0.68362317	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	82.206	81.592	2	6.4663E-06	72605	160511_QHF_FH_JSI10i_2	119.16	93.036			1.0011	1.1255	39.44	8	8	Median	2.2753	1.9579	27.495	2	2	Median	0.93899	1.1255	0.83295	2	2	Median	0.86472	0.84665	28.568	2	2	Median	0.85931	0.93985	30.879	2	2	Median	929240000	414370000	514870000	139330000	50336000	88995000	254000000	109970000	144040000	319550000	146190000	173350000	216360000	107880000	108480000	58901	1922	55502	358630;358631;358632;358633;358634;358635;358636;358637	484174;484175;484176;484177;484178;484179;484180;484181;484182	484182			9	
YGYEIPVDMLCKR	1	Acetyl (K)	1684.7953	0.79529888	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		84.899	74.382	2	0.048468	39226	160513_QHF_FH_JSI11Kac_5	51.092	44.989			2.2989	2.1892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2989	2.1892	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1530500	1018700	511730	0	0	0	0	0	0	1530500	1018700	511730	0	0	0	58902	1922	55503	358638	484183	484183			1	
YGYEKPEER	1	Unmodified	1169.5353	0.53530267	1988	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.138	11.228	2	0.044896	8481	160511_QHF_FH_JSI12i_3	54.416	36.381			0.82637	0.82369	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82637	0.82369	NaN	1	0	Median	28034000	16030000	12005000	0	0	0	0	0	0	0	0	0	28034000	16030000	12005000	58903	1988	55504	358639	484184	484184			1	
YGYIHLYDLETGTCIYMNR	0	Unmodified	2381.082	0.08203843	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				82.724	74.098	3	3.2049E-08	40471	160513_QHF_FH_JSI9Kac_6	161.32	145.9			1.5288	1.3341	NaN	1	1	Median	1.5288	1.3341	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	66159000	21637000	44522000	66159000	21637000	44522000	0	0	0	0	0	0	0	0	0	58904	2155	55505	358640	484185	484185			1	
YGYIHLYDLETGTCIYMNR	0	Oxidation (M)	2397.077	0.076953052	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	1	0			By matching	By MS/MS	16	0									2			1	1	80.658	71.28	3	2.4945E-34	37711	160513_QHF_FH_JSI12Kac_6	167.29	159.84			1.0552	1.0788	7.4593	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1586	1.1372	NaN	1	0	Median	0.96104	1.0233	NaN	1	0	Median	70025000	31082000	38943000	0	0	0	0	0	0	15289000	6131500	9158000	54736000	24951000	29785000	58905	2155	55505	358641;358642	484186;484187	484186		1803	2	
YGYILPDITK	1	Unmodified	1181.6332	0.6332258	5173	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				71.583	70.729	2	0.011656	62436	160511_QHF_FH_JSI9i_2	56.013	47.055			0.53394	0.47996	NaN	1	1	Median	0.53394	0.47996	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	46825000	29851000	16974000	46825000	29851000	16974000	0	0	0	0	0	0	0	0	0	58906	5173	55506	358643	484188	484188			1	
YGYNAGEATHHAVDSAVNVGVTAYNINNIGIK	1	Unmodified	3331.6222	0.62216721	3494	Q8N0X7	SPG20	Spartin	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	80.781	80.556	4	8.3272E-07	70007	160511_QHF_FH_JSI12i_3	50.865	48.458			0.78563	0.81481	26.178	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78563	0.81481	26.178	2	2	Median	47409000	30318000	17091000	0	0	0	0	0	0	0	0	0	47409000	30318000	17091000	58907	3494	55507	358644;358645	484189;484190;484191	484190			3	
YGYTEDPLEVR	0	Unmodified	1340.6248	0.62484596	2584	Q14966	ZNF638	Zinc finger protein 638	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	52.933	52.44	2	0.011523	47386	160511_QHF_FH_JSI11i_1	46.001	35.172			0.68972	0.81157	18.855	3	0	Median	NaN	NaN	NaN	0	0	Median	0.68972	0.81157	NaN	1	0	Median	1.0554	0.98184	NaN	1	0	Median	0.65321	0.67339	NaN	1	0	Median	147050000	73319000	73735000	0	0	0	42703000	19557000	23146000	50208000	22013000	28195000	54143000	31749000	22394000	58908	2584	55508	358646;358647;358648	484192;484193;484194	484192			3	
YGYTHLSAGELLR	0	Unmodified	1478.7518	0.75177781	1342	P30085	CMPK1	UMP-CMP kinase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			5									3	2	54.555	54.494	2;3	4.6435E-05	46710	160511_QHF_FH_JSI12i_3	78.342	68.11			0.93007	0.86765	35.394	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99735	0.94035	20.328	3	3	Median	0.49718	0.51717	NaN	1	1	Median	614500000	304280000	310220000	0	0	0	0	0	0	576910000	280070000	296840000	37594000	24215000	13379000	58909	1342	55509	358649;358650;358651;358652;358653	484195;484196;484197;484198;484199	484199			5	
YGYTHLSTGDLLR	0	Unmodified	1494.7467	0.74669243	776	P00568	AK1	Adenylate kinase isoenzyme 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1		1	3	2	55.641	53.873	2;3	4.012E-07	47811	160511_QHF_FH_JSI11i_3	135.86	106.9			1.1283	1.1152	13.219	5	1	Median	NaN	NaN	NaN	0	0	Median	0.8087	0.94622	NaN	1	1	Median	1.3074	1.2325	15.116	2	0	Median	1.1074	1.132	2.1123	2	0	Median	825220000	351260000	473960000	0	0	0	4345200	2662200	1682900	531930000	206100000	325830000	288940000	142500000	146440000	58910	776	55510	358654;358655;358656;358657;358658;358659	484200;484201;484202;484203;484204;484205;484206;484207;484208;484209;484210;484211;484212	484203			13	
YHAASAEEQATIER	0	Unmodified	1574.7325	0.73249893	5532	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	17.806	17.819	2	0.0025198	14794	160511_QHF_FH_JSI11i_3	69.979	53.347			0.87764	0.90374	34.933	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0896	1.0334	48.176	2	2	Median	0.87764	0.90374	NaN	1	0	Median	73094000	35050000	38043000	0	0	0	0	0	0	49303000	23380000	25924000	23790000	11671000	12120000	58911	5532	55511	358660;358661;358662	484213;484214;484215	484213			3	
YHEEFEK	1	Unmodified	980.42396	0.42396131	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.12	0.331		7	1							2	2	2	2	11.615	11.191	2;3	0.0088923	9040	160511_QHF_FH_JSI9i_2	49.442	33.239			1.0663	1.1451	30.721	8	2	Median	0.94811	0.81465	62.03	2	1	Median	0.87412	1.0667	4.0518	2	1	Median	1.3215	1.3569	2.58	2	0	Median	1.0663	1.1276	8.1567	2	0	Median	1687100000	754300000	932760000	192680000	89597000	103090000	438200000	211830000	226360000	654110000	282220000	371900000	402070000	170660000	231410000	58912	2579	55512	358663;358664;358665;358666;358667;358668;358669;358670	484216;484217;484218;484219;484220;484221	484218			6	
YHEEFEKSR	1	Acetyl (K)	1265.5677	0.56766543	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		26.019	16.907	3	0.0096017	10279	160513_QHF_FH_JSI11Kac_6	42.718	37.404			0.27824	0.27965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27824	0.27965	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	7660100	6254600	1405600	0	0	0	0	0	0	7660100	6254600	1405600	0	0	0	58913	2579	55513	358671	484222	484222	2550		1	
YHEQLSTQSLIELFESFK	1	Unmodified	2198.0895	0.089549874	2155	Q00610	CLTC	Clathrin heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.44	6.77		3	2						4	2	2	3	2	99.664	95.901	3	2.6362E-33	49793	160513_QHF_FH_JSI9Kac_6	163.18	139.86			1.1803	1.0548	14.269	9	0	Median	1.2212	1.0476	1.9186	2	0	Median	0.98592	1.1746	31.958	2	0	Median	1.1803	1.1113	5.7537	3	0	Median	0.93348	0.97118	11.686	2	0	Median	2445500000	1101000000	1344500000	435570000	207350000	228220000	507850000	191710000	316140000	754260000	343850000	410400000	747830000	358110000	389720000	58914	2155	55514	358672;358673;358674;358675;358676;358677;358678;358679;358680	484223;484224;484225;484226;484227;484228;484229;484230;484231;484232;484233;484234	484229			12	
YHFAALEK	1	Unmodified	977.49707	0.49706667	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	33.185	32.681	3	0.0053311	27917	160511_QHF_FH_JSI11i_3	43.808	34.945			1.3215	1.2753	36.615	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.60464	0.70835	NaN	1	1	Median	1.0128	0.96743	NaN	1	0	Median	1.4661	1.4695	NaN	1	0	Median	171140000	86622000	84515000	0	0	0	18416000	9359300	9057000	61439000	27027000	34412000	91282000	50236000	41045000	58915	3032	55515	358681;358682;358683	484235;484236;484237;484238	484235			4	
YHFEDVGGVQGAR	0	Unmodified	1433.6688	0.66877646	4875	Q9HD47	RANGRF	Ran guanine nucleotide release factor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.668	35.245	3	0.0035142	30063	160511_QHF_FH_JSI11i_2	33.195	21.982			0.83671	0.89096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83671	0.89096	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38857000	21630000	17227000	0	0	0	0	0	0	38857000	21630000	17227000	0	0	0	58916	4875	55516	358684	484239	484239			1	
YHFFLYK	1	Unmodified	1016.512	0.51198846	2306;3053	Q12792;Q6IBS0	TWF1;TWF2	Twinfilin-1;Twinfilin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.63	6.37		4	15						11	8	8	5	9	60.477	55.667	2;3	0.002143	30399	160513_QHF_FH_JSI11Kac_6	74.335	50.907			0.93386	0.92196	23.358	23	5	Median	0.8447	0.72488	26.536	7	2	Median	0.69677	0.81443	13.555	5	1	Median	1.0772	1.0106	7.6966	5	1	Median	1.0465	1.1065	14.178	6	1	Median	4815100000	2368900000	2446200000	1355200000	623900000	731300000	1117300000	632130000	485140000	1184400000	539390000	644960000	1158300000	573460000	584810000	58917	2306;3053	55517	358685;358686;358687;358688;358689;358690;358691;358692;358693;358694;358695;358696;358697;358698;358699;358700;358701;358702;358703;358704;358705;358706;358707;358708;358709;358710;358711;358712;358713;358714	484240;484241;484242;484243;484244;484245;484246;484247;484248;484249;484250;484251;484252;484253;484254;484255;484256;484257;484258;484259;484260;484261;484262;484263;484264;484265;484266;484267;484268;484269;484270;484271;484272;484273;484274;484275;484276;484277;484278;484279;484280;484281;484282;484283;484284;484285;484286;484287;484288;484289;484290;484291;484292;484293;484294;484295;484296;484297;484298;484299;484300;484301;484302;484303;484304;484305;484306;484307	484265			68	
YHFLILLFSK	1	Unmodified	1279.7329	0.73288027	2277	Q08945	SSRP1	FACT complex subunit SSRP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.9	5.51			4						13	3	5	6	3	92.262	86.209	2;3	4.1113E-09	45020	160513_QHF_FH_JSI11Kac_6	138.11	122.57			0.78375	0.85539	36.339	16	0	Median	0.74635	0.6335	24.023	3	0	Median	0.72254	0.83379	15.558	5	0	Median	1.3196	1.2626	58.754	5	0	Median	0.69094	0.73184	16.159	3	0	Median	4262500000	2332700000	1929800000	847920000	391340000	456580000	1187500000	696330000	491120000	1482800000	775450000	707350000	744300000	469580000	274730000	58918	2277	55518	358715;358716;358717;358718;358719;358720;358721;358722;358723;358724;358725;358726;358727;358728;358729;358730;358731	484308;484309;484310;484311;484312;484313;484314;484315;484316;484317;484318;484319;484320;484321;484322;484323;484324;484325;484326;484327;484328;484329;484330;484331;484332;484333;484334	484310			27	
YHFNMGLLMGEAR	0	Unmodified	1537.717	0.71698898	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.91	6.47			6						5	2	5	2	2	77.79	73.825	2;3	3.3771E-05	38315	160513_QHF_FH_JSI11Kac_6	89.013	77.399			1.1327	1.1256	26.442	9	3	Median	1.5431	1.295	25.723	2	0	Median	0.78197	0.90774	20.721	5	2	Median	1.5921	1.5264	2.3565	2	1	Median	NaN	NaN	NaN	0	0	Median	664550000	321060000	343490000	129680000	57943000	71740000	393210000	205750000	187460000	141650000	57364000	84286000	0	0	0	58919	1609	55519	358732;358733;358734;358735;358736;358737;358738;358739;358740;358741;358742	484335;484336;484337;484338;484339;484340;484341;484342;484343;484344;484345;484346;484347	484339			13	
YHFNMGLLMGEAR	0	Oxidation (M)	1553.7119	0.7119036	1609	P47897	QARS	Glutamine--tRNA ligase	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	66.56	56.694	3	0.038779	29678	160513_QHF_FH_JSI12Kac_6	32.624	28.076			0.84932	0.88701	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84932	0.88701	NaN	1	0	Median	7169900	3523300	3646600	0	0	0	0	0	0	0	0	0	7169900	3523300	3646600	58920	1609	55519	358743	484348	484348			0	
YHGNVMLLR	0	Unmodified	1101.5753	0.57533377	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.08	6.32		3	5						4	3	2	4	3	39.29	35.859	2;3	1.35E-05	19860	160513_QHF_FH_JSI10Kac_6	101.54	101.54			1.0759	1.0626	26.037	12	0	Median	1.6679	1.3093	35.105	3	0	Median	0.82039	0.99111	11.329	2	0	Median	1.2423	1.2085	22.514	4	0	Median	0.91214	0.95267	19.638	3	0	Median	2497100000	1131200000	1365900000	635110000	163730000	471390000	212490000	99061000	113430000	786490000	413390000	373100000	863020000	455040000	407980000	58921	1650	55520	358744;358745;358746;358747;358748;358749;358750;358751;358752;358753;358754;358755	484349;484350;484351;484352;484353;484354;484355;484356;484357;484358;484359;484360;484361;484362	484362			14	
YHGNVMLLR	0	Oxidation (M)	1117.5702	0.57024839	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	1		2	36.62	27.727	3	0.0040427	15060	160513_QHF_FH_JSI9Kac_6	47.603	26.733			1.5245	1.624	36.609	3	0	Plateau	2.119	1.8225	NaN	1	0	Median	1.0968	1.2822	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80444	0.87653	NaN	1	0	Median	32174000	16050000	16124000	12720000	3954900	8765500	11748000	6166900	5580800	0	0	0	7705900	5927800	1778100	58922	1650	55520	358756;358757;358758;358759	484363;484364;484365;484366;484367;484368	484363		1327	6	
YHGQLTK	1	Unmodified	845.43955	0.43955179	1240	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		6.4436	6.4436	3	0.028336	4227	160511_QHF_FH_JSI11i_3	34.824	20.667			1.7936	1.6896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7936	1.6896	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	144440000	59154000	85284000	0	0	0	0	0	0	144440000	59154000	85284000	0	0	0	58923	1240	55521	358760	484369	484369			1	
YHGYIFGFYK	1	Unmodified	1293.6182	0.61824444	874	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.2	6.27			7						12	4	7	4	4	70.048	64.409	2;3	0.00031292	34927	160513_QHF_FH_JSI10Kac_6	78.334	57.557			1.0349	1.0083	27.893	16	6	Median	1.0719	0.93237	7.6171	3	1	Median	0.78622	0.93652	37.47	6	2	Median	1.0773	1.0147	20.133	3	1	Plateau	1.0484	1.0794	26.563	4	2	Median	2559600000	1337500000	1222100000	390240000	183190000	207050000	1226100000	742810000	483290000	488040000	189580000	298450000	455250000	221940000	233310000	58924	874	55522	358761;358762;358763;358764;358765;358766;358767;358768;358769;358770;358771;358772;358773;358774;358775;358776;358777;358778;358779	484370;484371;484372;484373;484374;484375;484376;484377;484378;484379;484380;484381;484382;484383;484384;484385;484386;484387;484388;484389;484390;484391;484392;484393;484394;484395;484396;484397;484398;484399;484400;484401;484402;484403;484404;484405	484400			34	
YHGYPYSFLMS	0	Unmodified	1363.5907	0.59070906	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	77.241	76.313	2	0.00097709	66870	160511_QHF_FH_JSI11i_2	67.032	55.868			1.3511	1.4336	5.2981	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3369	1.3809	NaN	1	0	Median	1.3654	1.4883	NaN	1	0	Median	53636000	21262000	32374000	0	0	0	0	0	0	34950000	13147000	21803000	18686000	8115600	10571000	58925	4641	55523	358780;358781	484406	484406			1	
YHIQVCTTTPCMLR	0	Unmodified	1778.8266	0.82661579	1158	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			56.583	55.037	3	0.0021483	46010	160511_QHF_FH_JSI10i_3	45.115	40.647			0.84107	0.95868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84107	0.95868	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13911000	9095000	4815900	0	0	0	13911000	9095000	4815900	0	0	0	0	0	0	58926	1158	55524	358782	484407	484407			1	
YHISALYVVDLK	1	Unmodified	1419.7762	0.77620165	5135;5134	Q9NYU2;Q9NYU1	UGGT1;UGGT2	UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									4	2	1	1		77.019	68.962	2;3	9.0218E-05	36865	160513_QHF_FH_JSI9Kac_6	85.288	72.088			0.79836	0.83864	19.437	3	0	Plateau	1.1322	0.96155	NaN	1	0	Median	0.71564	0.83434	NaN	1	0	Median	1.3004	1.2254	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	299520000	144570000	154940000	95173000	41376000	53798000	175590000	90395000	85192000	28754000	12804000	15951000	0	0	0	58927	5135;5134	55525	358783;358784;358785;358786	484408;484409;484410;484411	484409			4	
YHISALYVVDLKK	2	Unmodified	1547.8712	0.87116466	5135;5134	Q9NYU2;Q9NYU1	UGGT1;UGGT2	UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2	no	no	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									6	2	2	1	1	70.751	62.145	3;4	1.8027E-08	32982	160513_QHF_FH_JSI9Kac_6	106.13	84.075			1.0231	0.95774	24.831	6	0	Median	1.1835	1.0094	14.316	2	0	Median	0.60208	0.72225	4.5279	2	0	Median	1.3576	1.3528	NaN	1	0	Median	0.97118	1.0056	NaN	1	0	Median	266620000	145690000	120930000	71911000	35205000	36706000	139750000	86672000	53082000	34658000	12792000	21866000	20298000	11023000	9274900	58928	5135;5134	55526	358787;358788;358789;358790;358791;358792	484412;484413;484414;484415;484416;484417;484418	484414			6	
YHISTIFK	1	Unmodified	1007.544	0.54401687	647	O95155	UBE4B	Ubiquitin conjugation factor E4 B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	44.809	43.959	3	0.00101	36330	160511_QHF_FH_JSI9i_3	61.962	61.962			1.0803	1.0414	6.7848	4	0	Median	1.1088	0.91695	NaN	1	0	Median	0.91619	1.0261	NaN	1	0	Median	1.1573	1.0584	NaN	1	0	Median	1.0526	1.0569	NaN	1	0	Median	487980000	230810000	257170000	99430000	47405000	52024000	104580000	45128000	59452000	91441000	46131000	45310000	192530000	92150000	100380000	58929	647	55527	358793;358794;358795;358796	484419;484420;484421;484422;484423;484424	484422			6	
YHLLLVAAK	1	Unmodified	1026.6226	0.62260154	3340	Q86VI3	IQGAP3	Ras GTPase-activating-like protein IQGAP3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	57.277	48.019	2;3	0.00029295	26125	160513_QHF_FH_JSI11Kac_6	72.485	30.376			0.90774	0.93339	28.887	6	2	Median	1.2681	1.0784	NaN	1	0	Median	0.8338	0.96256	58.329	2	2	Median	0.83103	0.81389	0.76532	2	0	Median	0.98865	1.0647	NaN	1	0	Median	171190000	94006000	77187000	18567000	7536500	11030000	67493000	42571000	24922000	61457000	32865000	28592000	23676000	11033000	12643000	58930	3340	55528	358797;358798;358799;358800;358801;358802	484425;484426;484427;484428;484429	484425			5	
YHLMQFAEVTR	0	Oxidation (M)	1409.6762	0.67617003	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	51.8	42.518	2;3	7.3691E-10	22643	160513_QHF_FH_JSI9Kac_6	120.06	120.06			0.94969	0.96276	12.902	7	0	Median	1.2778	1.08	5.0293	2	0	Median	0.88523	1.0424	11.236	2	0	Median	0.96063	0.93772	NaN	1	0	Median	0.79298	0.84294	10.489	2	0	Median	867560000	418870000	448700000	259110000	113440000	145670000	241890000	119040000	122850000	31519000	13184000	18336000	335040000	173200000	161840000	58931	2909	55529	358803;358804;358805;358806;358807;358808;358809	484430;484431;484432;484433;484434;484435;484436;484437	484434		2167	8	
YHLMQFAEVTR	0	Unmodified	1393.6813	0.6812554	2909	Q5JVF3	PCID2	PCI domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	2	2	2	3	63.117	54.906	2;3	7.9817E-37	30016	160513_QHF_FH_JSI10Kac_6	169.65	156.25			1.0033	1.1865	20.473	9	1	Median	1.4317	1.2207	4.0213	2	0	Median	1.0098	1.1995	1.4355	2	0	Median	0.93401	0.87944	3.5141	2	0	Median	1.0033	1.0464	30.189	3	1	Median	4191000000	1866500000	2324500000	783920000	327870000	456050000	1829400000	736980000	1092500000	617720000	285110000	332610000	959880000	516520000	443370000	58932	2909	55529	358810;358811;358812;358813;358814;358815;358816;358817;358818	484438;484439;484440;484441;484442;484443;484444;484445;484446;484447;484448;484449;484450;484451;484452;484453;484454;484455	484452			18	
YHLQQNVQFSEDTVR	0	Unmodified	1862.8911	0.89112484	3333	Q86UX6	STK32C	Serine/threonine-protein kinase 32C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	54.502	45.454	3	0.00020492	24147	160513_QHF_FH_JSI9Kac_6	74.789	65.419			0.72624	0.78633	13.358	4	3	Median	0.99863	0.82492	NaN	1	0	Median	0.65145	0.75327	21.702	2	2	Median	NaN	NaN	NaN	0	0	Median	0.69384	0.74955	NaN	1	1	Median	38094000	23300000	14794000	5472600	2752500	2720100	26367000	15867000	10499000	0	0	0	6254100	4679600	1574400	58933	3333	55530	358819;358820;358821;358822;358823;358824	484456;484457;484458;484459;484460;484461;484462	484457			7	
YHNVGLSK	1	Unmodified	916.47667	0.47666558	2488	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		8	8							3	4	4	5	10.881	10.527	2;3	0.0007284	7773	160511_QHF_FH_JSI12i_3	66.351	37.433			1.0774	1.053	47.291	16	5	Median	1.2278	1.0332	8.9572	3	0	Median	0.94666	1.1052	21.792	4	0	Median	1.6975	1.5832	26.765	4	1	Linear	0.65798	0.67311	79.007	5	4	Median	13264000000	6427600000	6836600000	1102000000	424510000	677500000	1929200000	804890000	1124300000	3847400000	1777200000	2070200000	6385700000	3421000000	2964600000	58934	2488	55531	358825;358826;358827;358828;358829;358830;358831;358832;358833;358834;358835;358836;358837;358838;358839;358840	484463;484464;484465;484466;484467;484468;484469;484470;484471;484472;484473;484474;484475;484476;484477;484478;484479;484480;484481	484479			19	
YHPDEVGK	1	Unmodified	943.43995	0.43994572	4521	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		8								2		3	3	8.9819	8.5566	2;3	0.00068332	6232	160511_QHF_FH_JSI12i_2	81.548	68.511			0.90738	0.97955	9.7054	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0204	1.0368	15.532	2	1	Median	0.88645	0.97955	3.0123	2	1	Median	756330000	358710000	397620000	0	0	0	0	0	0	449780000	197640000	252140000	306550000	161070000	145480000	58935	4521	55532	358841;358842;358843;358844;358845;358846;358847;358848	484482;484483;484484;484485;484486;484487;484488;484489;484490	484484			9	
YHPGYFGK	1	Unmodified	967.4552	0.45520186	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.28	5.38		8	12						5	5	7	6	7	24.093	21.514	2;3	0.00039863	17626	160511_QHF_FH_JSI10i_3	77.674	70.786			0.82815	0.83021	35.149	21	4	Median	1.4506	1.2055	20.907	5	0	Median	0.71626	0.81727	36.099	5	0	Median	0.82815	0.78001	55.131	5	2	Median	0.77769	0.82295	24.424	6	2	Median	20137000000	9130500000	11006000000	3357100000	1349700000	2007400000	3444900000	1649300000	1795600000	5355400000	2414400000	2941000000	7979100000	3717100000	4262000000	58936	1589	55533	358849;358850;358851;358852;358853;358854;358855;358856;358857;358858;358859;358860;358861;358862;358863;358864;358865;358866;358867;358868;358869;358870;358871;358872;358873	484491;484492;484493;484494;484495;484496;484497;484498;484499;484500;484501;484502;484503;484504;484505;484506;484507;484508;484509;484510;484511;484512;484513;484514;484515;484516;484517;484518;484519;484520;484521;484522;484523;484524;484525;484526;484527;484528;484529;484530;484531;484532;484533;484534;484535;484536;484537;484538;484539;484540;484541;484542;484543;484544;484545;484546;484547;484548;484549;484550;484551	484508			61	
YHPGYFGKVGMK	2	Acetyl (K)	1424.6911	0.69109181	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	2	2	56.526	47.149	2;3	0.00060349	24655	160513_QHF_FH_JSI12Kac_6	69.721	56.799			0.6749	0.72129	54.563	6	0	Median	NaN	NaN	NaN	0	0	Median	0.95686	1.123	9.7639	2	0	Median	0.35175	0.33994	6.2907	2	0	Median	0.6749	0.72129	12.324	2	0	Median	302680000	188800000	113880000	0	0	0	88636000	46385000	42251000	158350000	111990000	46357000	55692000	30422000	25270000	58937	1589	55534	358874;358875;358876;358877;358878;358879	484552;484553;484554;484555;484556;484557;484558	484555	1599;1601		7	
YHPGYFGKVGMK	2	Acetyl (K);Oxidation (M)	1440.686	0.68600643	1589	P46776	RPL27A	60S ribosomal protein L27a	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		46.682	37.522	3	0.002256	20498	160513_QHF_FH_JSI11Kac_6	60.641	54.918			1.0437	0.95544	21.991	2	1	Median	0.95905	0.81784	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1358	1.1162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29266000	8641000	20625000	7963500	4052700	3910800	7643700	0	7643700	13659000	4588300	9070600	0	0	0	58938	1589	55534	358880;358881;358882	484559;484560;484561;484562	484559	1599;1601	1249	4	
YHPIDIETSVSR	0	Unmodified	1415.7045	0.70449327	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	40.08	39.884	2	0.052848	33949	160511_QHF_FH_JSI12i_3	43.512	22.064			0.90085	0.93377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90085	0.93377	NaN	1	1	Median	24886000	14204000	10682000	0	0	0	0	0	0	0	0	0	24886000	14204000	10682000	58939	5202	55535	358883	484563	484563			1	
YHQIGSGK	1	Unmodified	888.44537	0.44536545	230	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.69	6.45			9						7	4	3	5	4	5.5192	1.8303	2;3	0.0014529	2663	160511_QHF_FH_JSI12i_3	89.296	58.577			0.96897	0.97557	38.446	15	2	Median	1.2343	1.0267	17.036	4	0	Median	1.4302	1.6545	24.04	3	0	Plateau	1.1647	1.118	30.23	4	2	Median	0.60942	0.63643	31.656	4	0	Median	10353000000	4838700000	5513800000	971790000	413920000	557870000	1768600000	778540000	990040000	2875600000	1196200000	1679400000	4736600000	2450100000	2286500000	58940	230	55536	358884;358885;358886;358887;358888;358889;358890;358891;358892;358893;358894;358895;358896;358897;358898;358899	484564;484565;484566;484567;484568;484569;484570;484571;484572;484573;484574;484575;484576;484577;484578;484579	484575			16	
YHSDDYIK	1	Unmodified	1039.4611	0.4610751	2438	Q13547	HDAC1	Histone deacetylase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	14.856	14.237	2	0.007058	11064	160511_QHF_FH_JSI11i_2	60.682	54.579			1.1168	0.96925	10.489	3	0	Median	1.1316	0.96925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1168	1.108	NaN	1	0	Median	0.80386	0.90094	NaN	1	0	Median	101630000	47533000	54095000	28741000	15922000	12818000	0	0	0	42635000	17248000	25387000	30253000	14363000	15890000	58941	2438	55537	358900;358901;358902	484580;484581;484582;484583;484584	484584			5	
YHSDEYIK	1	Unmodified	1053.4767	0.47672516	3882	Q92769	HDAC2	Histone deacetylase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	14.262	13.657	2	0.011461	11042	160511_QHF_FH_JSI12i_2	54.157	38.718			1.0334	1.1411	14.036	4	1	Median	1.3523	1.1901	NaN	1	1	Median	1.1107	1.3545	NaN	1	0	Median	0.96136	0.97058	NaN	1	0	Median	0.95383	1.0941	NaN	1	0	Median	201970000	97040000	104930000	32458000	13786000	18673000	51319000	25439000	25880000	70726000	33473000	37253000	47465000	24342000	23122000	58942	3882	55538	358903;358904;358905;358906	484585;484586;484587;484588;484589	484585			5	
YHSLAPMYYR	0	Unmodified	1299.607	0.60702783	1727;1174;1931	P20339;P51148;P61020	RAB5A;RAB5C;RAB5B	Ras-related protein Rab-5A;Ras-related protein Rab-5C;Ras-related protein Rab-5B	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.95	5.63		3	13						5	4	7	5	5	39.876	37.067	2;3	1.8874E-11	30416	160511_QHF_FH_JSI9i_3	118.5	95.854			1.1212	1.0914	34.496	20	2	Median	1.3468	1.106	15.255	4	0	Median	0.81027	0.95463	9.2795	6	0	Median	1.2423	1.1918	40.174	5	0	Median	1.0429	1.1376	58.099	5	2	Median	2696700000	1387300000	1309500000	559120000	237610000	321510000	657390000	356860000	300530000	567420000	314260000	253160000	912810000	478550000	434260000	58943	1174;1727;1931	55539	358907;358908;358909;358910;358911;358912;358913;358914;358915;358916;358917;358918;358919;358920;358921;358922;358923;358924;358925;358926;358927	484590;484591;484592;484593;484594;484595;484596;484597;484598;484599;484600;484601;484602;484603;484604;484605;484606;484607;484608;484609;484610;484611;484612;484613;484614	484605			22	
YHSLAPMYYR	0	Oxidation (M)	1315.6019	0.60194245	1727;1174;1931	P20339;P51148;P61020	RAB5A;RAB5C;RAB5B	Ras-related protein Rab-5A;Ras-related protein Rab-5C;Ras-related protein Rab-5B	no	no	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	31.652	30.584	3	0.0007838	23385	160511_QHF_FH_JSI12i_3	57.55	50.661			0.9872	1.0594	18.601	4	1	Median	1.1157	0.91069	27.362	2	1	Median	0.97014	1.1165	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0046	1.0156	NaN	1	0	Median	217260000	111240000	106020000	80591000	38377000	42214000	51528000	30624000	20904000	0	0	0	85138000	42237000	42900000	58944	1174;1727;1931	55539	358928;358929;358930;358931	484615;484616;484617;484618;484619;484620	484620		796	6	
YHTEIVFAR	0	Unmodified	1134.5822	0.58219329	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.32	6.64		9	3						7	4	5	5	5	40.669	36.576	2;3	5.412E-08	31537	160511_QHF_FH_JSI12i_2	103.83	94.476			0.90695	1.0009	18.087	18	1	Median	1.1115	0.94403	7.5805	4	0	Linear	0.89138	1.1054	5.2076	5	0	Median	0.91605	0.88136	27.712	5	1	Median	0.86227	0.93595	25.461	4	0	Median	2508400000	1198400000	1310000000	283250000	113920000	169330000	672400000	366540000	305850000	855040000	397220000	457820000	697690000	320720000	376970000	58945	821	55540	358932;358933;358934;358935;358936;358937;358938;358939;358940;358941;358942;358943;358944;358945;358946;358947;358948;358949;358950	484621;484622;484623;484624;484625;484626;484627;484628;484629;484630;484631;484632;484633;484634;484635;484636;484637;484638	484624			18	
YHTESLQNMSK	1	Unmodified	1336.6082	0.60815004	637	O94992	HEXIM1	Protein HEXIM1	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				20.762	19.833	3	0.019027	16894	160511_QHF_FH_JSI9i_2	36.252	28.147			1.161	0.97669	NaN	1	1	Median	1.161	0.97669	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22514000	12211000	10304000	22514000	12211000	10304000	0	0	0	0	0	0	0	0	0	58946	637	55541	358951	484639	484639			1	
YHTINGHNAEVR	0	Unmodified	1409.68	0.68000985	1212	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		10.003	10.003	3	0.0011118	7577	160511_QHF_FH_JSI11i_3	62.891	45.949			0.48784	0.4369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48784	0.4369	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	48071000	26870000	21201000	0	0	0	0	0	0	48071000	26870000	21201000	0	0	0	58947	1212	55542	358952	484640	484640			1	
YHTSQSGDEMTSLSEYVSR	0	Oxidation (M)	2191.9328	0.93279124	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.66		8	6						4	4	6	4	4	43.319	40.314	2;3	4.2891E-42	34437	160511_QHF_FH_JSI12i_3	204.52	199.03			1.045	1.0856	6.9499	15	0	Median	1.411	1.1958	8.0633	3	0	Median	0.89827	1.0877	3.0893	4	0	Median	1.0441	1.0095	6.0892	4	0	Median	1.0523	1.1093	3.2672	4	0	Median	3541500000	1718300000	1823200000	325160000	132170000	192990000	515190000	256680000	258510000	1040100000	528310000	511790000	1661000000	801140000	859870000	58948	898	55543	358953;358954;358955;358956;358957;358958;358959;358960;358961;358962;358963;358964;358965;358966;358967;358968;358969;358970	484641;484642;484643;484644;484645;484646;484647;484648;484649;484650;484651;484652;484653;484654;484655;484656;484657;484658;484659;484660;484661;484662;484663;484664;484665;484666;484667;484668;484669;484670;484671;484672;484673	484669		473	33	
YHTSQSGDEMTSLSEYVSR	0	Unmodified	2175.9379	0.93787661	898	P08238	HSP90AB1	Heat shock protein HSP 90-beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.5	2	16	12					2	6	6	8	14	10	57.993	55.104	2;3	1.4751E-266	48501	160511_QHF_FH_JSI10i_2	419.88	418.24			1.0426	1.0803	21.553	33	7	Median	1.3283	1.1189	9.4962	5	0	Median	0.88928	1.0657	11.976	7	1	Median	1.0633	1.0065	25.867	12	3	Median	0.97166	1.0807	25.412	9	3	Median	33256000000	16689000000	16567000000	4148100000	1735400000	2412700000	4765600000	2442900000	2322600000	10171000000	5084500000	5086500000	14172000000	7426300000	6745500000	58949	898	55543	358971;358972;358973;358974;358975;358976;358977;358978;358979;358980;358981;358982;358983;358984;358985;358986;358987;358988;358989;358990;358991;358992;358993;358994;358995;358996;358997;358998;358999;359000;359001;359002;359003;359004;359005;359006;359007;359008	484674;484675;484676;484677;484678;484679;484680;484681;484682;484683;484684;484685;484686;484687;484688;484689;484690;484691;484692;484693;484694;484695;484696;484697;484698;484699;484700;484701;484702;484703;484704;484705;484706;484707;484708;484709;484710;484711;484712;484713;484714;484715;484716;484717;484718;484719;484720;484721;484722;484723;484724;484725;484726;484727;484728;484729;484730;484731;484732;484733;484734	484714			61	
YHVLFLGTDR	0	Unmodified	1219.635	0.63495714	4333	Q99985	SEMA3C	Semaphorin-3C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	63.75	54.428	3	0.0041087	29601	160513_QHF_FH_JSI11Kac_6	35.348	27.687			1.1013	1.0118	39.082	2	1	Median	0.88062	0.76749	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3774	1.3339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	18259000	8795600	9463500	9395600	5260800	4134800	0	0	0	8863500	3534800	5328700	0	0	0	58950	4333	55544	359009;359010;359011;359012	484735;484736;484737;484738	484735			4	
YHVLVNLGK	1	Unmodified	1041.5971	0.59711507	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	6.48			7						6	2	2	4	5	43.643	39.823	2;3	7.9546E-06	34640	160511_QHF_FH_JSI11i_3	84.498	75.916			1.0978	1.2041	54.305	11	5	Median	1.2108	1.0067	47.762	2	0	Median	0.78012	0.88716	NaN	1	0	Median	0.80608	0.75749	48.404	3	2	Plateau	1.0978	1.2041	71.242	5	3	Median	1070800000	637900000	432910000	217150000	121560000	95595000	167080000	109810000	57272000	222890000	119750000	103150000	463680000	286790000	176900000	58951	552	55545	359013;359014;359015;359016;359017;359018;359019;359020;359021;359022;359023;359024;359025	484739;484740;484741;484742;484743;484744;484745;484746;484747;484748;484749;484750;484751;484752;484753;484754;484755;484756	484739			18	
YHVPVVVVPEGSASDTHEQAILR	0	Unmodified	2502.2867	0.28668655	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	3.94		6	4						1	2	2	4	3	64.586	63.296	3;4	2.0583E-24	56076	160511_QHF_FH_JSI11i_3	163.45	152.15			1.0764	1.0959	17.207	11	2	Median	1.536	1.3262	15.525	2	1	Median	0.8914	1.0983	3.7729	2	0	Median	1.1709	1.1044	16.626	4	1	Median	0.98226	0.9906	8.2659	3	0	Plateau	3343400000	1631900000	1711400000	207240000	92823000	114410000	484710000	273450000	211260000	1446300000	641140000	805140000	1205100000	624510000	580630000	58952	817	55546	359026;359027;359028;359029;359030;359031;359032;359033;359034;359035;359036	484757;484758;484759;484760;484761;484762;484763;484764;484765;484766;484767;484768;484769;484770;484771;484772;484773;484774;484775	484760			19	
YHVSEKPYGIVEK	2	Acetyl (K)	1589.809	0.80895834	645	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		55.241	45.513	2	0.0050703	24575	160513_QHF_FH_JSI11Kac_6	70.977	56.287			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4666000	4666000	0	0	0	0	0	0	0	4666000	4666000	0	0	0	0	58953	645	55547	359037	484776	484776	322		1	
YHWLVLPWTSISSLK	1	Unmodified	1828.9876	0.98759141	3247	Q7Z2E3	APTX	Aprataxin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	92.117	83.788	2;3	2.0819E-10	45019	160513_QHF_FH_JSI12Kac_6	141.73	109.66			1.1274	1.0778	10.292	8	0	Median	1.2504	1.0778	2.1273	2	0	Median	0.77323	0.90323	1.7512	2	0	Median	1.2093	1.1671	1.884	2	0	Median	1.0117	1.0619	6.0993	2	0	Median	3133100000	1474300000	1658800000	712310000	282460000	429850000	1284700000	648020000	636710000	618680000	280520000	338160000	517410000	263320000	254090000	58954	3247	55548	359038;359039;359040;359041;359042;359043;359044;359045	484777;484778;484779;484780;484781;484782;484783;484784;484785;484786;484787;484788;484789;484790;484791	484787			15	
YHYVGTFPDGQK	1	Unmodified	1410.6568	0.65681479	676	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	33.816	32.865	2	0.0025232	28850	160511_QHF_FH_JSI10i_2	70.17	58.123			2.9936	3.6512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.9936	3.6512	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	27048000	8865900	18182000	0	0	0	27048000	8865900	18182000	0	0	0	0	0	0	58955	676	55549	359046;359047;359048	484792;484793;484794	484793			3	
YIAEAVASIVEAK	1	Unmodified	1362.7395	0.73948179	4829	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	73.63	72.761	2	0.0025318	62890	160511_QHF_FH_JSI12i_2	66.663	49.151			0.48679	0.47891	17.904	4	4	Median	0.50818	0.43833	NaN	1	1	Median	0.39738	0.48693	NaN	1	1	Median	0.4663	0.47102	NaN	1	1	Median	0.57777	0.65796	NaN	1	1	Median	161230000	116200000	45038000	23780000	15239000	8541000	31562000	22321000	9241100	69959000	53601000	16358000	35934000	25036000	10898000	58956	4829	55550	359049;359050;359051;359052	484795;484796;484797;484798	484795			4	
YIAENGTDPINNQPLSEEQLIDIK	1	Unmodified	2713.3447	0.34465494	5426	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									2	2	3	2	86.065	85.609	2;3	8.3671E-28	77662	160511_QHF_FH_JSI10i_1	195.38	175.81			0.94196	0.98304	9.1757	8	0	Median	1.1471	0.92733	12.364	2	0	Median	0.88441	1.034	2.4344	2	0	Median	1.0225	1.0018	7.8028	2	0	Median	0.85385	0.8922	9.5976	2	0	Median	1132500000	605030000	527430000	189530000	95628000	93898000	361970000	198830000	163140000	319740000	169570000	150170000	261230000	141010000	120220000	58957	5426	55551	359053;359054;359055;359056;359057;359058;359059;359060;359061	484799;484800;484801;484802;484803;484804;484805;484806;484807;484808;484809;484810;484811;484812;484813;484814;484815;484816;484817;484818;484819;484820;484821;484822;484823;484824;484825	484818			27	
YIAFDFHK	1	Unmodified	1039.5127	0.51271674	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	50.562	49.647	3	0.00019677	43502	160511_QHF_FH_JSI11i_3	89.752	63.813			0.98433	0.96526	13.326	8	0	Median	1.0618	0.88259	8.4171	2	0	Median	0.74887	0.87378	11.602	2	0	Median	1.022	1.0253	0.97482	2	0	Median	1.009	1.1009	16.113	2	0	Median	430610000	216230000	214370000	57237000	25592000	31645000	76341000	46929000	29413000	145460000	64844000	80620000	151560000	78869000	72695000	58958	4991	55552	359062;359063;359064;359065;359066;359067;359068;359069	484826;484827;484828;484829;484830;484831;484832;484833;484834;484835;484836;484837;484838;484839;484840;484841;484842	484826			17	
YIAIASTTVETTDPEK	1	Unmodified	1737.8673	0.86726108	1368	P31150	GDI1	Rab GDP dissociation inhibitor alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	53.793	53.129	2;3	2.6398E-07	48035	160511_QHF_FH_JSI11i_1	151.78	138.12			0.93697	1.0258	21.45	8	1	Median	1.5849	1.2974	24.379	2	1	Median	0.81759	0.95512	9.3005	2	0	Median	0.82367	0.81045	13.831	2	0	Median	1.0112	1.0616	4.0534	2	0	Median	771530000	388760000	382760000	148420000	62111000	86306000	213070000	117010000	96055000	192940000	104180000	88751000	217110000	105450000	111650000	58959	1368	55553	359070;359071;359072;359073;359074;359075;359076;359077	484843;484844;484845;484846;484847;484848;484849;484850;484851;484852;484853;484854;484855	484843			13	
YIAIVSTTVETK	1	Unmodified	1323.7286	0.72858275	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.04	6.62	4	4	3			1	2	5	5	6	9	5	4	59.918	54.026	2	9.5973E-09	29241	160513_QHF_FH_JSI11Kac_5	117.67	113.37			0.94342	0.98402	49.645	24	8	Median	0.96949	0.811	44.335	6	2	Median	0.81025	0.98182	73.119	9	6	Median	0.91096	0.90646	23.973	5	0	Median	0.98698	1.0771	6.9133	4	0	Median	2778300000	1338000000	1440300000	551470000	239670000	311800000	835560000	434770000	400780000	871360000	417290000	454070000	519880000	246250000	273620000	58960	1702	55554	359078;359079;359080;359081;359082;359083;359084;359085;359086;359087;359088;359089;359090;359091;359092;359093;359094;359095;359096;359097;359098;359099;359100;359101	484856;484857;484858;484859;484860;484861;484862;484863;484864;484865;484866;484867;484868;484869;484870;484871;484872;484873;484874;484875;484876;484877;484878;484879;484880;484881;484882;484883;484884;484885;484886;484887;484888;484889;484890;484891;484892;484893;484894;484895	484883			40	
YIAIVSTTVETKEPEK	2	Unmodified	1806.9615	0.96149581	1702	P50395	GDI2	Rab GDP dissociation inhibitor beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.26	6.36		14	10					6	8	7	8	12	11	54.179	49.87	2;3	1.3682E-15	43806	160511_QHF_FH_JSI9i_2	117.23	99.865			0.46191	0.5022	91.466	33	32	Median	0.89332	0.76146	113.33	6	5	Median	0.33109	0.40631	70.633	7	7	Median	0.48218	0.47003	106.77	9	9	Median	0.50035	0.54483	83.379	11	11	Median	8487500000	5453700000	3033800000	1433100000	1110000000	323070000	1181200000	810510000	370680000	2577000000	1544700000	1032300000	3296200000	1988500000	1307700000	58961	1702	55555	359102;359103;359104;359105;359106;359107;359108;359109;359110;359111;359112;359113;359114;359115;359116;359117;359118;359119;359120;359121;359122;359123;359124;359125;359126;359127;359128;359129;359130;359131;359132;359133;359134;359135;359136;359137;359138;359139	484896;484897;484898;484899;484900;484901;484902;484903;484904;484905;484906;484907;484908;484909;484910;484911;484912;484913;484914;484915;484916;484917;484918;484919;484920;484921;484922;484923;484924;484925;484926;484927;484928;484929;484930;484931;484932;484933;484934;484935;484936;484937;484938	484913			43	
YIANLGHGLYPDMDPEHVGAFVDAVHK	1	Unmodified	2964.4229	0.42286246	843	P06132	UROD	Uroporphyrinogen decarboxylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			8									2	6	88.829	88.752	4;5	1.6965E-13	76576	160511_QHF_FH_JSI12i_3	94.72	88.559			1.1416	1.142	21.476	8	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3484	1.2482	10.222	2	0	Median	1.0636	1.0841	22.929	6	3	Median	672500000	304810000	367690000	0	0	0	0	0	0	174400000	71535000	102860000	498100000	233280000	264820000	58962	843	55556	359140;359141;359142;359143;359144;359145;359146;359147	484939;484940;484941;484942;484943;484944;484945;484946;484947	484943			7	
YIANTVELR	0	Unmodified	1077.5819	0.58185893	817	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		4						4		1	3	2	2	42.707	36.463	2	3.1835E-05	31311	160511_QHF_FH_JSI12i_2	101.6	59.313			0.97223	1.0662	26.743	7	1	Median	0.86313	0.69723	NaN	1	0	Median	0.83048	1.0033	16.384	2	1	Median	1.2434	1.2377	33.42	2	0	Median	1.0856	1.203	17.071	2	0	Median	650160000	332720000	317440000	5533700	2986300	2547400	138720000	76550000	62168000	277950000	124650000	153290000	227960000	128530000	99435000	58963	817	55557	359148;359149;359150;359151;359152;359153;359154;359155	484948;484949;484950;484951;484952;484953;484954;484955;484956	484949			9	
YIAPTVLTDVDPK	1	Unmodified	1430.7657	0.76569654	1745	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.416	7	2								3	3	1	2	66.113	65.434	2	1.015E-05	59637	160511_QHF_FH_JSI12i_1	133.91	91.803			0.91561	0.88644	18.49	9	8	Median	1.0764	0.88867	8.8157	3	3	Median	0.70963	0.8401	25.938	3	3	Median	0.91561	0.88644	NaN	1	0	Median	0.90056	0.94852	28.446	2	2	Median	1389300000	711260000	678030000	321220000	141330000	179890000	406390000	229890000	176500000	210280000	125000000	85286000	451390000	215040000	236350000	58964	1745	55558	359156;359157;359158;359159;359160;359161;359162;359163;359164	484957;484958;484959;484960;484961;484962;484963;484964;484965;484966;484967	484960			11	
YIASLVNADK	1	Unmodified	1092.5815	0.58152458	4666	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	40.377	39.418	2	0.0044189	33768	160511_QHF_FH_JSI11i_2	65.933	51.397			2.881	2.8579	39.767	3	3	Plateau	1.4759	1.2924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.881	2.8579	NaN	1	1	Median	1.8341	2.0113	NaN	1	1	Median	55416000	17339000	38077000	13391000	4824700	8566100	0	0	0	26138000	7372300	18766000	15887000	5142400	10744000	58965	4666	55559	359165;359166;359167	484968;484969;484970	484970			3	
YIASTQRPDGTWR	0	Unmodified	1549.7637	0.76373948	4378	Q9BRP8	WIBG	Partner of Y14 and mago	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				30.043	28.651	3	0.026546	23356	160511_QHF_FH_JSI9i_3	34.685	13.455			1.2942	1.0279	NaN	1	0	Median	1.2942	1.0279	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30679000	15452000	15228000	30679000	15452000	15228000	0	0	0	0	0	0	0	0	0	58966	4378	55560	359168	484971	484971			1	
YIASVQGSTPSPR	0	Unmodified	1361.6939	0.69392858	1685	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.61	3	5	1				1	2		3	2	5	2	31.247	28.817	2	7.476E-23	24999	160511_QHF_FH_JSI9i_2	149.23	127.77			0.89982	0.92939	15.716	10	3	Median	1.2869	1.0866	NaN	1	0	Median	0.70666	0.85256	0.079413	2	1	Median	0.99125	0.96665	20.059	5	1	Median	0.84071	0.90522	4.971	2	1	Median	490860000	248450000	242410000	67245000	27738000	39507000	130100000	67470000	62633000	188220000	99262000	88958000	105290000	53981000	51311000	58967	1685	55561	359169;359170;359171;359172;359173;359174;359175;359176;359177;359178;359179;359180	484972;484973;484974;484975;484976;484977;484978;484979;484980;484981;484982;484983;484984;484985;484986;484987	484982			16	
YIATDFTLK	1	Unmodified	1070.5648	0.56481189	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By matching		By MS/MS	1.67	0.471	1	2								1	1		1	58.219	57.523	2	0.00020158	49303	160511_QHF_FH_JSI12i_2	90.657	66.502			0.95219	0.9471	29.472	2	0	Median	1.3927	1.1665	NaN	1	0	Median	0.65104	0.76894	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115590000	60767000	54823000	69587000	32789000	36798000	46003000	27979000	18025000	0	0	0	0	0	0	58968	387	55562	359181;359182;359183	484988;484989	484988			2	
YIATITDK	1	Unmodified	923.4964	0.49639797	3434;489	Q8IWZ3;O75179	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	no	no	0	0	0	0		By MS/MS			1	0	1										1			27.056	26.744	2	0.011461	23648	160511_QHF_FH_JSI10i_1	54.157	17.137			0.26613	0.30145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.26613	0.30145	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	30994000	23816000	7177600	0	0	0	30994000	23816000	7177600	0	0	0	0	0	0	58969	3434;489	55563	359184	484990	484990			1	
YIAVSFIDP	0	Unmodified	1023.5277	0.5276981	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			88.456	88.354	2	0.00036627	80245	160511_QHF_FH_JSI10i_1	91.584	74.023			0.49445	0.56651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.49445	0.56651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13996000	8979400	5017100	0	0	0	13996000	8979400	5017100	0	0	0	0	0	0	58970	140	55564	359185	484991	484991			1	
YIAVSFVDP	0	Unmodified	1009.512	0.51204804	2194	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	80.142	79.8	2	0.00015866	72398	160511_QHF_FH_JSI10i_1	88.591	87.381			0.86195	0.91724	24.419	2	0	Median	NaN	NaN	NaN	0	0	Median	0.67808	0.77178	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0957	1.0901	NaN	1	0	Median	37302000	19606000	17696000	0	0	0	21202000	12329000	8872900	0	0	0	16100000	7276700	8823000	58971	2194	55565	359186;359187;359188;359189	484992;484993;484994;484995	484994			4	
YICDNQDTISSK	1	Unmodified	1442.6348	0.63475872	50	CON__P02769			yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	22.939	22.369	2	3.977E-05	19604	160511_QHF_FH_JSI12i_1	112.13	39.482		+	0.84948	0.87445	67.828	7	6	Median	0.95249	0.81028	87.421	2	2	Median	0.94889	1.1168	NaN	1	0	Median	0.64487	0.61393	61.695	2	2	Median	0.42577	0.44284	96.22	2	2	Median	462910000	302540000	160370000	63004000	37653000	25351000	52465000	26970000	25495000	138330000	89741000	48592000	209110000	148180000	60929000	58972	50	55566	359190;359191;359192;359193;359194;359195;359196	484996;484997;484998;484999;485000;485001;485002;485003	484998			8	
YICPHAPR	0	Unmodified	1012.4913	0.49126979	685	O95372	LYPLA2	Acyl-protein thioesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			13.155	12.393	3	0.0098557	9826	160511_QHF_FH_JSI10i_3	42.869	19.441			1.2547	1.4371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2547	1.4371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	111610000	39655000	71953000	0	0	0	111610000	39655000	71953000	0	0	0	0	0	0	58973	685	55567	359197;359198	485004;485005	485004			2	
YICQIKNDGGMR	1	Unmodified	1453.6806	0.68060348	3821	Q8WZ42	TTN	Titin	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	26.447	25.876	2	0.010982	22781	160511_QHF_FH_JSI10i_1	82.452	25.275			0.040335	0.0394	90.901	4	4	Median	0.064519	0.052521	NaN	1	1	Median	0.025216	0.029557	NaN	1	1	Median	0.010205	0.0099175	NaN	1	1	Median	0.079156	0.080993	NaN	1	1	Median	270780000	264160000	6617000	42928000	40580000	2347700	90735000	89417000	1318500	82380000	82008000	371820	54732000	52153000	2579000	58974	3821	55568	359199;359200;359201;359202	485006;485007;485008;485009	485008			4	
YIDQEELNK	1	Unmodified	1150.5506	0.55061839	898;880;2870	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.17	5.98	8	8	3		1	7	6	1	1	7	9	9	10	27.276	22.787	2	5.2963E-32	13770	160513_QHF_FH_JSI12Kac_3	192.14	128.66			0.88571	0.98357	131.24	33	30	Median	1.5776	1.3505	130.02	6	5	Median	0.88571	1.0113	154.96	9	7	Median	1.2117	1.2418	125.95	8	8	Median	0.49678	0.50835	132.34	10	10	Median	92143000000	45623000000	46520000000	23996000000	13535000000	10461000000	22003000000	8467400000	13535000000	22111000000	10503000000	11609000000	24033000000	13118000000	10915000000	58975	898;880;2870	55569	359203;359204;359205;359206;359207;359208;359209;359210;359211;359212;359213;359214;359215;359216;359217;359218;359219;359220;359221;359222;359223;359224;359225;359226;359227;359228;359229;359230;359231;359232;359233;359234;359235;359236;359237	485010;485011;485012;485013;485014;485015;485016;485017;485018;485019;485020;485021;485022;485023;485024;485025;485026;485027;485028;485029;485030;485031;485032;485033;485034;485035;485036;485037;485038;485039;485040;485041;485042;485043;485044;485045;485046;485047;485048;485049;485050;485051;485052;485053;485054;485055	485043			46	
YIDQEELNKTK	2	Acetyl (K)	1421.7038	0.70382456	898;880;2870	P08238;P07900;Q14568;Q58FF8	HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2	no	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						7					2	2	3	44.073	35.068	2;3	3.0726E-11	18927	160513_QHF_FH_JSI10Kac_3	139.86	123.19			1.7377	1.882	224.89	4	3	Median	NaN	NaN	NaN	0	0	Median	9.111	10.797	NaN	1	1	Median	0.26187	0.25924	33.298	2	1	Median	13.465	14.462	NaN	1	1	Median	75826000	50937000	24889000	0	0	0	15807000	6890900	8915900	39282000	29206000	10076000	20737000	14840000	5897300	58976	898;880;2870	55570	359238;359239;359240;359241;359242;359243;359244	485056;485057;485058;485059;485060;485061;485062;485063	485063	602;618		8	
YIDSADLEPITSQEEPVR	0	Unmodified	2060.9902	0.99022976	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	66.187	65.645	2;3	7.8883E-42	59619	160511_QHF_FH_JSI11i_1	210.38	193.43			0.89861	0.94721	12.35	7	0	Median	1.473	1.217	NaN	1	0	Median	0.80931	0.95123	0.59883	2	0	Median	0.88654	0.85526	1.7625	2	0	Median	0.93628	0.96674	8.9116	2	0	Median	732280000	332470000	399810000	120560000	46055000	74501000	217320000	114640000	102680000	204240000	83455000	120780000	190170000	88322000	101850000	58977	1126	55571	359245;359246;359247;359248;359249;359250;359251	485064;485065;485066;485067;485068;485069;485070;485071;485072	485064			9	
YIDSADLEPITSQEEPVRYHEAWQK	1	Unmodified	3003.425	0.42503053	1126	P17812	CTPS1	CTP synthase 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		69.409	69.409	4	0.00018359	61988	160511_QHF_FH_JSI11i_3	65.901	62.839			1.0288	0.93697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0288	0.93697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	39347000	17243000	22104000	0	0	0	0	0	0	39347000	17243000	22104000	0	0	0	58978	1126	55572	359252	485073	485073			0	
YIDTEHGGSQAR	0	Unmodified	1332.6058	0.60584185	2674	Q15436	SEC23A	Protein transport protein Sec23A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.11	0.314		8	1							2	2	2	3	8.0181	7.6351	2;3	2.1703E-11	5369	160511_QHF_FH_JSI11i_2	130.56	126.93			0.92833	0.98073	16.084	9	0	Median	1.201	1.0334	7.3925	2	0	Median	0.6769	0.83656	16.429	2	0	Median	1.0074	1.0192	13.062	2	0	Median	0.89232	0.98154	20.96	3	0	Median	1158700000	595710000	563020000	174510000	68928000	105580000	290980000	191420000	99563000	365370000	166590000	198780000	327860000	168780000	159090000	58979	2674	55573	359253;359254;359255;359256;359257;359258;359259;359260;359261	485074;485075;485076;485077;485078;485079;485080;485081;485082;485083;485084;485085;485086;485087;485088;485089;485090	485085			17	
YIEFHSQSGFYYK	1	Unmodified	1667.762	0.76200815	4393	Q9BSC4	NOL10	Nucleolar protein 10	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			61.002	52.603	3	0.014069	29021	160513_QHF_FH_JSI10Kac_6	43.761	36.217			0.85228	0.97938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.85228	0.97938	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13393000	6817000	6575800	0	0	0	13393000	6817000	6575800	0	0	0	0	0	0	58980	4393	55574	359262	485091	485091			1	
YIEGLSAESNSISK	1	Unmodified	1496.7359	0.73585297	3318	Q86U86	PBRM1	Protein polybromo-1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	45.506	44.854	2	0.00068703	40765	160511_QHF_FH_JSI12i_1	89.189	56.242			0.53731	0.53166	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53731	0.53166	NaN	1	1	Median	15375000	11696000	3678800	0	0	0	0	0	0	0	0	0	15375000	11696000	3678800	58981	3318	55575	359263	485092	485092			1	
YIEIYVQK	1	Unmodified	1054.5699	0.56989727	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.32	6.36	4	7	4					3	4	4	7	6	5	49.767	46.233	2	0.00062453	39582	160511_QHF_FH_JSI12i_2	124.59	66.401			1.0298	0.96685	63.056	20	14	Median	1.4992	1.2253	33.753	3	2	Median	0.75929	0.90897	66.695	7	5	Median	0.7662	0.75358	74.777	6	4	Median	1.1259	1.1784	73.488	4	3	Median	2117100000	1058200000	1058900000	219040000	89880000	129160000	723400000	376580000	346820000	580790000	278140000	302650000	593860000	313560000	280300000	58982	1807;2155	55576	359264;359265;359266;359267;359268;359269;359270;359271;359272;359273;359274;359275;359276;359277;359278;359279;359280;359281;359282;359283;359284;359285	485093;485094;485095;485096;485097;485098;485099;485100;485101;485102;485103;485104;485105;485106;485107;485108;485109;485110;485111;485112;485113;485114;485115;485116;485117;485118;485119;485120;485121	485096			29	
YIELFLNSCPK	1	Unmodified	1382.6904	0.69042311	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.648	72.372	2	7.9501E-05	62501	160511_QHF_FH_JSI12i_2	100.48	79.104			0.25537	0.27113	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25537	0.27113	NaN	1	1	Median	14125000	11291000	2834600	0	0	0	0	0	0	0	0	0	14125000	11291000	2834600	58983	2314	55577	359286	485122	485122			1	
YIELFLNSTPGGGSGMGGSGMGGYGR	0	Unmodified	2521.1366	0.1365932	1382	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.433		6	2							1	1	4	2	88.209	87.746	2;3	3.6078E-10	76293	160511_QHF_FH_JSI12i_3	77.19	69.914			0.69796	0.73649	76.307	6	5	Median	2.7079	2.3315	NaN	1	1	Median	0.46472	0.59482	NaN	1	1	Median	1.3541	1.3595	92.7	2	2	Median	0.5135	0.55802	45.257	2	1	Median	132600000	61529000	71069000	11754000	2955100	8799300	13294000	12388000	906950	68119000	19170000	48948000	39431000	27016000	12415000	58984	1382	55578	359287;359288;359289;359290;359291;359292;359293;359294	485123;485124;485125;485126;485127;485128;485129;485130;485131;485132	485132			10	
YIELLTR	0	Unmodified	906.51747	0.51746776	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	49.76	48.691	2	0.001372	41911	160511_QHF_FH_JSI11i_2	134.66	47.081			0.17656	0.18587	172.36	4	4	Median	NaN	NaN	NaN	0	0	Median	0.10794	0.12954	NaN	1	1	Median	0.13257	0.13144	NaN	1	1	Median	1.016	1.1299	206.23	2	2	Median	698500000	441120000	257380000	0	0	0	149040000	114860000	34178000	206300000	168480000	37821000	343160000	157780000	185390000	58985	1085	55579	359295;359296;359297;359298	485133;485134;485135;485136	485135			4	
YIENMSR	0	Unmodified	911.4171	0.41710179	3426	Q8IWS0	PHF6	PHD finger protein 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	14.564	14.06	2	0.011879	11144	160511_QHF_FH_JSI11i_2	76.035	61.622			0.394	0.42538	73.393	4	4	Linear	2.5698	2.1723	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64249	0.64481	74.212	2	2	Median	0.61679	0.69483	NaN	1	1	Median	356670000	174880000	181800000	52704000	12463000	40241000	0	0	0	212690000	111450000	101240000	91283000	50968000	40315000	58986	3426	55580	359299;359300;359301;359302	485137;485138;485139;485140	485140			4	
YIESPVLFLR	0	Unmodified	1235.6914	0.69140938	2509	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	84.886	84.107	2	4.5501E-14	73969	160511_QHF_FH_JSI11i_2	160.11	82.824			1.026	1.102	22.856	5	3	Median	1.026	0.86637	NaN	1	0	Median	0.59095	0.71603	NaN	1	1	Median	1.1354	1.1498	NaN	1	0	Median	1.0413	1.1713	8.6247	2	2	Median	748220000	380840000	367390000	94176000	43865000	50311000	142060000	90362000	51696000	195580000	88128000	107460000	316410000	158480000	157920000	58987	2509	55581	359303;359304;359305;359306;359307	485141;485142;485143;485144;485145;485146;485147	485146			7	
YIETLNVPGAVLVFLPGWNLIYTMQK	1	Oxidation (M)	2994.5929	0.5928879	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	3	2	1	1	100.69	92.434	2;3;4	4.8228E-173	52876	160513_QHF_FH_JSI9Kac_6	284.72	263.19			1.0364	0.89289	12.9	7	0	Median	1.0389	0.88433	0.70831	3	0	Median	0.81797	0.97522	18.991	2	0	Median	1.2586	1.1832	NaN	1	0	Median	0.91764	0.97259	NaN	1	0	Median	1762200000	898250000	863990000	652100000	332680000	319420000	634640000	337310000	297330000	170100000	76425000	93676000	305390000	151830000	153560000	58988	2265	55582	359308;359309;359310;359311;359312;359313;359314	485148;485149;485150;485151;485152;485153;485154;485155;485156;485157;485158;485159;485160	485152		1873	13	
YIETLNVPGAVLVFLPGWNLIYTMQK	1	Unmodified	2978.598	0.59797328	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.7	5.22		2							10	4	4	3	1	102.33	95.452	2;3;4	5.289E-150	56768	160513_QHF_FH_JSI10Kac_6	324.19	302.94			0.9464	0.90002	12.539	11	2	Median	1.0338	0.89975	12.158	4	0	Median	0.71238	0.87746	11.556	4	2	Median	0.84965	0.80604	15.597	2	0	Median	0.9464	1.0038	NaN	1	0	Median	7584900000	3932700000	3652200000	3059000000	1509300000	1549700000	2995600000	1633500000	1362200000	1163100000	591910000	571160000	367240000	198090000	169150000	58989	2265	55582	359315;359316;359317;359318;359319;359320;359321;359322;359323;359324;359325;359326	485161;485162;485163;485164;485165;485166;485167;485168;485169;485170;485171;485172;485173;485174;485175;485176;485177;485178	485176			18	
YIETSELCGGAR	0	Unmodified	1354.6187	0.61871473	133	O00429	DNM1L	Dynamin-1-like protein	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	1	1									1		1	34.038	33.203	2	0.0048822	29721	160511_QHF_FH_JSI10i_1	63.076	48.313			1.4794	1.685	12.476	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3026	1.5427	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6801	1.8404	NaN	1	1	Median	81879000	37783000	44096000	0	0	0	62449000	31026000	31423000	0	0	0	19431000	6757300	12673000	58990	133	55583	359327;359328	485179;485180	485180			2	
YIEVFKSHR	1	Acetyl (K)	1219.635	0.63495714	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									7		4	2	1	45.827	36.77	2;3	3.421E-06	20237	160513_QHF_FH_JSI10Kac_6	112.71	95.198			0.075553	0.082388	259.09	5	5	Median	NaN	NaN	NaN	0	0	Median	0.42539	0.50409	239.79	3	3	Plateau	0.016536	0.01588	NaN	1	1	Median	0.075553	0.082388	NaN	1	1	Median	231000000	186440000	44561000	0	0	0	92869000	51626000	41243000	125600000	123130000	2472100	12529000	11683000	845990	58991	1775	55584	359329;359330;359331;359332;359333;359334;359335	485181;485182;485183;485184;485185;485186;485187	485184	1790		7	
YIFAVAHR	0	Unmodified	975.52904	0.5290355	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By matching		16	0									2		1	1		43.181	34.062	3	0.0038958	18855	160513_QHF_FH_JSI10Kac_6	51.335	24.539			1.0683	1.149	27.258	2	0	Median	NaN	NaN	NaN	0	0	Median	1.1741	1.3932	NaN	1	0	Median	0.97195	0.94757	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	12942000	5563800	7377900	0	0	0	7721500	3814600	3907000	5220100	1749200	3470900	0	0	0	58992	2767	55585	359336;359337	485188	485188			1	
YIFDLFYK	1	Unmodified	1107.5641	0.56408361	1513	P41223	BUD31	Protein BUD31 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.93		4							3	2	2	1	2	90.757	87.1	2	0.0052731	42063	160513_QHF_FH_JSI12Kac_6	78.324	47.034			0.73065	0.77415	12.764	7	0	Median	1.0078	0.84382	23.147	2	0	Median	0.62252	0.74398	5.6213	2	0	Median	0.71862	0.70288	NaN	1	0	Median	0.74869	0.82851	8.341	2	0	Median	290420000	163200000	127220000	66123000	36159000	29964000	85468000	52929000	32539000	49467000	25065000	24402000	89362000	49050000	40313000	58993	1513	55586	359338;359339;359340;359341;359342;359343;359344	485189;485190;485191;485192;485193;485194	485193			6	
YIFDNVAK	1	Unmodified	968.49673	0.49673232	2652	Q15293	RCN1	Reticulocalbin-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	42.967	41.978	2	0.0031292	36040	160511_QHF_FH_JSI11i_2	81.296	44.276			1.2936	1.2582	48.818	4	3	Median	1.0643	0.90783	48.309	2	2	Median	NaN	NaN	NaN	0	0	Median	2.2026	2.1227	NaN	1	1	Median	1.1144	1.2392	NaN	1	0	Median	580500000	279200000	301300000	257840000	125830000	132010000	0	0	0	149630000	65193000	84441000	173020000	88184000	84839000	58994	2652	55587	359345;359346;359347;359348	485195;485196;485197;485198;485199	485199			5	
YIFSVVENLQR	0	Unmodified	1366.7245	0.72450043	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			78.01	76.611	2	0.0060337	64266	160511_QHF_FH_JSI10i_3	62.463	34.064			1.1879	1.3558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1879	1.3558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19805000	9999300	9805500	0	0	0	19805000	9999300	9805500	0	0	0	0	0	0	58995	2305	55588	359349	485200	485200			1	
YIFTMLSTLAR	0	Unmodified	1314.7006	0.70059386	2197	Q02880	TOP2B	DNA topoisomerase 2-beta	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		88.391	79.061	2	2.8689E-11	44144	160513_QHF_FH_JSI11Kac_6	166.09	152.71			0.64592	0.606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.64592	0.606	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	202760000	111360000	91401000	0	0	0	0	0	0	202760000	111360000	91401000	0	0	0	58996	2197	55589	359350	485201	485201			1	
YIGESAR	0	Unmodified	794.39227	0.39226725	2006	P62333	PSMC6	26S protease regulatory subunit 10B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.6	5.2		4						1		2	1	1	1	8.7748	6.4758	2	0.0084038	5696	160511_QHF_FH_JSI11i_2	83.614	28.85			1.1008	1.1918	13.245	5	0	Linear	1.1303	0.96091	4.4437	2	0	Median	0.90903	1.1306	NaN	1	0	Median	1.2563	1.291	NaN	1	0	Median	1.0507	1.1829	NaN	1	0	Median	1735800000	835650000	900110000	308840000	130330000	178510000	397940000	214200000	183740000	560140000	242800000	317340000	468840000	248320000	220530000	58997	2006	55590	359351;359352;359353;359354;359355	485202;485203;485204;485205;485206;485207	485205			6	
YIGEVGDIVVGR	0	Unmodified	1275.6823	0.68230126	2476	Q13868	EXOSC2	Exosome complex component RRP4	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	63.877	62.959	2	0.0030581	54839	160511_QHF_FH_JSI11i_2	67.704	37.895			0.59603	0.62684	5.851	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.60702	0.60143	NaN	1	1	Median	0.58524	0.65332	NaN	1	1	Median	112240000	63259000	48984000	0	0	0	0	0	0	65830000	37390000	28440000	46413000	25869000	20543000	58998	2476	55591	359356;359357	485208;485209	485209			2	
YIGIVKQAGLER	1	Acetyl (K)	1387.7823	0.78234966	1775	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									5		1	2	2	69.017	59.815	2	0.00079472	32976	160513_QHF_FH_JSI10Kac_6	87.298	57.489			19.45	20.755	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19.45	20.755	NaN	1	1	Median	27389000	22742000	4647300	0	0	0	4777900	4777900	0	10218000	10218000	0	12393000	7745700	4647300	58999	1775	55592	359358;359359;359360;359361;359362	485210;485211;485212;485213;485214	485214	1791		5	
YIGNMHGNEVVGR	0	Unmodified	1444.6881	0.6881317	594	O75976	CPD	Carboxypeptidase D	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	24.63	24.605	2	0.0051635	20409	160511_QHF_FH_JSI12i_3	53.683	38.71			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59000	594	55593	359363	485215	485215			1	
YIGTGHADTTK	1	Unmodified	1162.5619	0.56185177	4502	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.58		10	3					2	6	4	3	8	6	9.11	5.7945	2;3	2.3175E-07	5643	160511_QHF_FH_JSI11i_2	121.83	105.29			1.0787	0.99981	48.23	21	12	Median	1.5801	1.326	32.903	4	2	Linear	0.60627	0.7453	45.272	3	1	Plateau	1.2677	1.2182	56.415	8	5	Median	0.776	0.8709	50.808	6	4	Median	3663800000	1922500000	1741300000	526180000	282140000	244040000	637480000	365230000	272260000	1851500000	966150000	885370000	648610000	308990000	339620000	59001	4502	55594	359364;359365;359366;359367;359368;359369;359370;359371;359372;359373;359374;359375;359376;359377;359378;359379;359380;359381;359382;359383;359384	485216;485217;485218;485219;485220;485221;485222;485223;485224;485225;485226;485227;485228;485229;485230;485231;485232;485233;485234;485235;485236;485237;485238;485239;485240;485241;485242	485227			27	
YIHLENLLAR	0	Unmodified	1240.6928	0.69280637	2801	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		6	10							5	4	4	3	64.569	63.77	2;3	5.4163E-15	55985	160511_QHF_FH_JSI11i_3	137.05	121.18			1.0106	1.0657	34.118	12	6	Median	1.2184	0.98357	54.739	4	3	Median	0.87143	1.0473	19.199	2	0	Median	1.1702	1.0954	39.221	3	2	Median	1.0057	1.0367	12.598	3	1	Median	1031500000	461300000	570170000	114620000	54091000	60528000	134650000	61187000	73461000	335540000	140970000	194570000	446670000	205060000	241610000	59002	2801	55595	359385;359386;359387;359388;359389;359390;359391;359392;359393;359394;359395;359396;359397;359398;359399;359400	485243;485244;485245;485246;485247;485248;485249;485250;485251;485252;485253;485254;485255;485256;485257;485258;485259;485260;485261;485262;485263;485264;485265;485266;485267	485244			25	
YIHNLLK	1	Unmodified	899.52289	0.52288749	4632	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		25.203	25.203	3	0.03581	21541	160511_QHF_FH_JSI11i_3	31.935	7.3038			0.24853	0.23662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24853	0.23662	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42674000	22784000	19890000	0	0	0	0	0	0	42674000	22784000	19890000	0	0	0	59003	4632	55596	359401	485268	485268			1	
YIHSANVLHR	0	Unmodified	1208.6414	0.6414395	1309;1289	P27361;P31152;Q16659;P28482	MAPK3;MAPK4;MAPK6;MAPK1	Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6;Mitogen-activated protein kinase 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									68	11	23	16	18	29.285	20.823	2;3;4	3.6548E-14	9968	160513_QHF_FH_JSI12Kac_6	125.18	92.658			1.0655	1.1503	37.787	54	16	Median	1.6104	1.401	31.931	10	2	Median	0.93908	1.1145	42.614	16	5	Median	1.1524	1.1442	33.06	15	3	Median	0.87585	0.9721	36.074	13	6	Median	1607600000	764880000	842700000	181350000	65980000	115370000	811270000	417880000	393380000	239250000	103640000	135610000	375710000	177380000	198340000	59004	1289;1309	55597	359402;359403;359404;359405;359406;359407;359408;359409;359410;359411;359412;359413;359414;359415;359416;359417;359418;359419;359420;359421;359422;359423;359424;359425;359426;359427;359428;359429;359430;359431;359432;359433;359434;359435;359436;359437;359438;359439;359440;359441;359442;359443;359444;359445;359446;359447;359448;359449;359450;359451;359452;359453;359454;359455;359456;359457;359458;359459;359460;359461;359462;359463;359464;359465;359466;359467;359468;359469	485269;485270;485271;485272;485273;485274;485275;485276;485277;485278;485279;485280;485281;485282;485283;485284;485285;485286;485287;485288;485289;485290;485291;485292;485293;485294;485295;485296;485297;485298;485299;485300;485301;485302;485303;485304;485305;485306;485307;485308;485309;485310;485311;485312;485313;485314;485315;485316;485317;485318;485319;485320;485321;485322;485323;485324;485325;485326;485327;485328;485329;485330;485331;485332;485333;485334;485335;485336;485337	485312			65	
YIIEELNVR	0	Unmodified	1147.6237	0.62372375	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	63.106	61.979	2	0.0084672	54085	160511_QHF_FH_JSI11i_2	52.937	6.9645			1.0858	1.0582	49.295	2	2	Median	1.7597	1.4995	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66994	0.74676	NaN	1	1	Median	194990000	110100000	84886000	65483000	31661000	33822000	0	0	0	0	0	0	129510000	78442000	51065000	59005	1520	55598	359470;359471;359472;359473	485338;485339;485340;485341	485340			4	
YIIEELNVRK	1	Unmodified	1275.7187	0.71868677	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.45	0.498		6	5							2	3	3	3	51.902	51.183	2;3	6.1042E-08	43830	160511_QHF_FH_JSI12i_3	96.143	75.355			0.91558	0.92967	38.755	11	7	Median	1.2374	1.0725	19.255	2	2	Median	0.74741	0.92967	64.783	3	2	Median	1.6105	1.5762	36.522	3	2	Plateau	0.75292	0.86291	21.436	3	1	Median	1694200000	837400000	856760000	107980000	54818000	53166000	289880000	152590000	137290000	618690000	284380000	334310000	677600000	345610000	332000000	59006	1520	55599	359474;359475;359476;359477;359478;359479;359480;359481;359482;359483;359484	485342;485343;485344;485345;485346;485347;485348;485349;485350;485351;485352	485351			11	
YIIGMLER	0	Unmodified	993.53174	0.53173762	486	O75165	DNAJC13	DnaJ homolog subfamily C member 13	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			61.516	60.658	2	0.019355	53744	160511_QHF_FH_JSI10i_2	45.718	32.73			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59007	486	55600	359485	485353	485353			1	
YIIIGDMGVGK	1	Unmodified	1164.6213	0.62128091	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.18	2		2					2		2	1	1	2	71.355	67.189	2	0.00015666	61903	160511_QHF_FH_JSI12i_1	93.551	31.351			1.8715	1.8119	84.634	6	5	Plateau	0.49595	0.40763	76.955	2	2	Median	0.94164	1.0793	NaN	1	1	Median	1.8715	1.8119	NaN	1	1	Median	0.80066	0.85241	114.7	2	1	Median	190700000	101390000	89307000	46092000	33077000	13015000	23798000	12548000	11250000	79062000	30442000	48620000	41750000	25328000	16422000	59008	1938	55601	359486;359487;359488;359489;359490;359491	485354;485355;485356;485357;485358;485359	485356			6	
YIIIGDMGVGK	1	Oxidation (M)	1180.6162	0.61619553	1938	P61106	RAB14	Ras-related protein Rab-14	yes	yes	0	0	1	0				By MS/MS	15	0								1					1	62.146	51.412	2	0.0063055	26136	160513_QHF_FH_JSI12Kac_5	71.223	50.894			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59009	1938	55601	359492	485360	485360		1602	1	
YIIIGDTGVGK	1	Unmodified	1134.6285	0.62847478	1930	P61019;Q8WUD1	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.39	6.27	5	4	4				5	5		5	6	6	6	59.02	53.872	2	4.0492E-23	46237	160511_QHF_FH_JSI12i_2	174.02	110.54			1.068	1.0587	78.485	23	10	Median	1.1655	0.99583	50.419	5	3	Median	1.068	1.2756	71.689	6	3	Median	1.0711	1.0604	39.049	6	2	Median	0.2457	0.26835	121.61	6	2	Plateau	4513000000	2382000000	2131000000	993910000	409350000	584560000	971720000	491240000	480490000	1380600000	696950000	683640000	1166800000	784420000	382340000	59010	1930	55602	359493;359494;359495;359496;359497;359498;359499;359500;359501;359502;359503;359504;359505;359506;359507;359508;359509;359510;359511;359512;359513;359514;359515	485361;485362;485363;485364;485365;485366;485367;485368;485369;485370;485371;485372;485373;485374;485375;485376;485377;485378;485379;485380;485381;485382;485383;485384;485385;485386;485387;485388;485389;485390;485391;485392;485393;485394	485366			34	
YIISLDQDSVVK	1	Unmodified	1378.7344	0.73439641	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	68.517	68.085	2	4.3667E-05	61938	160511_QHF_FH_JSI11i_1	101.3	71.486			0.59078	0.67568	25.227	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.57256	0.67568	NaN	1	0	Median	0.8698	0.83477	NaN	1	0	Median	1.0393	1.1167	NaN	1	0	Median	146240000	74688000	71555000	0	0	0	58630000	33178000	25452000	47740000	21880000	25860000	39872000	19630000	20242000	59011	5207	55603	359516;359517;359518	485395;485396;485397	485395			3	
YIIYAKER	1	Acetyl (K)	1096.5917	0.59169534	1674	P49736	MCM2	DNA replication licensing factor MCM2	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		51.591	41.871	2	0.059692	22671	160513_QHF_FH_JSI11Kac_6	51.854	22.478			1.2937	1.2525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2937	1.2525	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8803400	6408300	2395100	0	0	0	0	0	0	8803400	6408300	2395100	0	0	0	59012	1674	55604	359519	485398	485398			1	
YIKDYMK	2	Acetyl (K)	1001.4892	0.4892041	1036	P13693;Q9HAU6	TPT1;TPT1P8	Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8	yes	no	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.4	0.49							3	2			2	2	1	46.905	36.629	2	0.0076877	20825	160513_QHF_FH_JSI10Kac_4	95.531	77.495			0.65409	0.71749	62.961	5	0	Median	NaN	NaN	NaN	0	0	Median	0.94329	1.1161	0.66246	2	0	Median	0.34765	0.34124	40.397	2	0	Median	0.65409	0.71749	NaN	1	0	Median	122340000	71032000	51308000	0	0	0	41677000	21224000	20453000	58112000	36829000	21283000	22551000	12979000	9571900	59013	1036	55605	359520;359521;359522;359523;359524	485399;485400;485401;485402;485403	485400	864;867		5	
YIKDYMK	2	Acetyl (K);Oxidation (M)	1017.4841	0.48411873	1036	P13693;Q9HAU6	TPT1;TPT1P8	Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8	yes	no	1	0	1	1				By MS/MS	14	0							1						1	30.759	21.524	2	0.034278	13486	160513_QHF_FH_JSI12Kac_4	67.981	52.542			7.1745	7.7549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	7.1745	7.7549	NaN	1	1	Median	6933100	572140	6361000	0	0	0	0	0	0	0	0	0	6933100	572140	6361000	59014	1036	55605	359525	485404	485404	864;867		1	
YIKLQNVYR	1	Acetyl (K)	1237.6819	0.68190733	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	1	2	60.263	50.776	2	0.00019412	26543	160513_QHF_FH_JSI12Kac_6	95.741	72.313			0.61779	0.66484	36.019	2	0	Median	NaN	NaN	NaN	0	0	Median	0.7249	0.85769	NaN	1	0	Median	0.52652	0.51535	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51693000	27141000	24552000	0	0	0	16907000	10165000	6741800	16322000	7662100	8659600	18464000	9313600	9150700	59015	2442	55606	359526;359527;359528;359529	485405;485406;485407;485408	485407	2480		4	
YILAATLDNTLK	1	Unmodified	1334.7446	0.74456717	1971	P61964	WDR5	WD repeat-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.75	4.26		6	1					1		2	2	2	2	74.494	71.904	2	8.2579E-10	64444	160511_QHF_FH_JSI10i_2	121.83	100.96			1.3541	1.4986	65.513	6	6	Median	1.7501	1.5371	35.93	2	2	Median	1.3387	1.6402	NaN	1	1	Median	0.67267	0.67429	100.17	2	2	Median	1.5087	1.7181	NaN	1	1	Median	201440000	83976000	117460000	42726000	15623000	27103000	45291000	18253000	27038000	60530000	28218000	32312000	52892000	21883000	31009000	59016	1971	55607	359530;359531;359532;359533;359534;359535;359536;359537	485409;485410;485411;485412;485413;485414;485415;485416	485416			8	
YILAEPDPHAPDPEK	1	Unmodified	1690.8203	0.82025131	5241	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.5	0.5	2	2								1	1	2		47.515	46.914	3	0.00023316	42273	160511_QHF_FH_JSI10i_1	50.155	46.651			0.93324	0.95825	13.968	4	1	Median	0.99741	0.88031	NaN	1	1	Median	0.87321	1.0431	NaN	1	0	Median	0.96556	0.94508	20.963	2	0	Median	NaN	NaN	NaN	0	0	Median	177250000	93053000	84194000	27858000	15115000	12743000	54724000	31788000	22936000	94666000	46151000	48515000	0	0	0	59017	5241	55608	359538;359539;359540;359541	485417;485418;485419	485417			3	
YILATLLK	1	Unmodified	933.5899	0.58990443	3119	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.64	6.14			7					1	3	3	2	3	3	75.69	71.803	2	0.0013089	38015	160513_QHF_FH_JSI11Kac_6	100.45	55.84			0.94833	1.0277	69.272	11	9	Median	0.75741	0.62632	94.49	3	2	Median	0.89203	1.0211	72.416	2	2	Median	1.172	1.1377	72.828	3	2	Median	0.94833	1.0277	58.655	3	3	Median	489530000	246990000	242540000	98831000	59360000	39471000	96172000	58128000	38044000	177160000	73399000	103760000	117370000	56105000	61263000	59018	3119	55609	359542;359543;359544;359545;359546;359547;359548;359549;359550;359551;359552	485420;485421;485422;485423;485424;485425;485426;485427;485428;485429;485430	485424			11	
YILAVHSDFFQK	1	Unmodified	1466.7558	0.75580056	5209	Q9P2D0	IBTK	Inhibitor of Bruton tyrosine kinase	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	69.419	69.121	3	0.0014121	59892	160511_QHF_FH_JSI12i_3	52.79	44.756			1.0943	1.1012	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0943	1.1012	NaN	1	0	Median	35991000	17436000	18556000	0	0	0	0	0	0	0	0	0	35991000	17436000	18556000	59019	5209	55610	359553	485431;485432	485432			2	
YILDGSGYFDVR	0	Unmodified	1403.6721	0.67213051	4461	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	74.707	73.954	2	0.0015749	63799	160511_QHF_FH_JSI12i_2	61.65	51.697			1.0412	1.1138	23.654	4	1	Median	1.5623	1.3087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.92865	0.90862	26.885	2	0	Median	0.98972	1.1289	NaN	1	0	Median	267990000	124690000	143300000	74045000	28873000	45172000	0	0	0	140750000	68793000	71961000	53189000	27027000	26162000	59020	4461	55611	359554;359555;359556;359557	485433;485434;485435;485436	485434			4	
YILGSVVDSEK	1	Unmodified	1208.6289	0.62886871	233	O15013	ARHGEF10	Rho guanine nucleotide exchange factor 10	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		50.833	50.307	2	0.0085645	43400	160511_QHF_FH_JSI11i_2	50.108	32.868			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59021	233	55612	359558	485437	485437			1	
YILNFLR	0	Unmodified	937.53854	0.53853756	3205	Q719H9;Q4G0X4	KCTD1;KCTD21	BTB/POZ domain-containing protein KCTD1;BTB/POZ domain-containing protein KCTD21	yes	no	0	0	0	0	By matching	By MS/MS			3	0			2							1	1			77.367	75.959	2	0.028305	63794	160511_QHF_FH_JSI10i_3	58.246	35.624			0.87968	0.866	3.9538	2	0	Median	1.0087	0.84212	NaN	1	0	Median	0.76717	0.89055	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	31393000	15312000	16082000	18965000	8102500	10863000	12428000	7209100	5218800	0	0	0	0	0	0	59022	3205	55613	359559;359560	485438	485438			1	
YILPDEPAIIVHPNWAAK	1	Unmodified	2046.0938	0.093847391	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	86.71	86.158	3	9.8519E-10	76558	160511_QHF_FH_JSI10i_2	113.01	87.695			0.43485	0.93517	44.529	5	0	Linear	1.1047	0.93517	NaN	1	0	Median	0.80524	0.99907	NaN	1	0	Median	0.46791	0.46826	NaN	1	0	Median	0.79268	0.85152	65.187	2	0	Median	356390000	181280000	175100000	54452000	23394000	31059000	67112000	33326000	33786000	106380000	59592000	46784000	128440000	64971000	63474000	59023	3438	55614	359561;359562;359563;359564;359565	485439;485440;485441;485442	485441			3	
YILSGDGAGTLFIIDEK	1	Unmodified	1810.9353	0.93528106	5745	Q9Y6N8	CDH10	Cadherin-10	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	95.831	95.484	2	1.86E-05	83808	160511_QHF_FH_JSI11i_2	100.55	84.298			1.0383	0.924	29.087	3	3	Median	1.0383	0.924	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4413	1.42	NaN	1	1	Median	0.74257	0.81562	NaN	1	1	Median	29538000	15646000	13892000	4910600	727170	4183500	0	0	0	12390000	6806100	5583500	12238000	8112900	4125000	59024	5745	55615	359566;359567;359568	485443;485444;485445	485445			3	
YILVSLILLGK	1	Unmodified	1230.7951	0.79514617	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	96.423	88.015	2	1.3677E-10	52202	160513_QHF_FH_JSI10Kac_6	129.1	109.83			0.80572	0.8603	22.364	4	4	Median	0.69842	0.59438	NaN	1	1	Median	0.7805	0.93279	NaN	1	1	Median	0.83175	0.79344	NaN	1	1	Median	0.91543	0.97377	NaN	1	1	Median	370430000	186680000	183750000	93418000	53200000	40218000	65946000	35698000	30248000	128440000	61290000	67153000	82623000	36496000	46127000	59025	5448	55616	359569;359570;359571;359572;359573	485446;485447;485448;485449;485450	485450			5	
YILVTGGVISGIGK	1	Unmodified	1375.8075	0.80750177	1126;4951	P17812;Q9NRF8	CTPS1;CTPS2	CTP synthase 1;CTP synthase 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.8	6.74		4	4						7	3	3	5	4	79.471	75.321	2;3	1.2747E-24	39115	160513_QHF_FH_JSI11Kac_6	159.94	148.4			0.93692	0.85881	22.808	13	1	Median	0.91054	0.79626	2.722	3	0	Plateau	0.65807	0.78966	15.451	3	0	Plateau	0.99028	0.96168	33.131	4	1	Median	1.0076	1.0801	18.08	3	0	Median	1994400000	977170000	1017300000	431790000	236120000	195670000	624560000	333220000	291340000	619750000	283460000	336290000	318330000	124370000	193960000	59026	1126;4951	55617	359574;359575;359576;359577;359578;359579;359580;359581;359582;359583;359584;359585;359586;359587;359588	485451;485452;485453;485454;485455;485456;485457;485458;485459;485460;485461;485462;485463;485464;485465;485466;485467;485468;485469;485470;485471;485472;485473;485474	485457			23	
YIMGSGESFMQLQQR	0	Unmodified	1773.8178	0.81782524	385	O43824	GTPBP6	Putative GTP-binding protein 6	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			69.73	68.933	2	0.021581	61228	160511_QHF_FH_JSI10i_2	49.5	40.178			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2861900	2861900	0	0	0	0	2861900	2861900	0	0	0	0	0	0	0	59027	385	55618	359589	485475	485475			1	
YIMLNPSSR	0	Unmodified	1079.5434	0.54336494	998	P11387	TOP1	DNA topoisomerase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.93		4	2						2	2	1	3	2	42.03	39.165	2	2.3118E-05	33283	160511_QHF_FH_JSI12i_3	105.57	70.319			0.98298	0.92754	19.818	8	2	Median	1.2398	1.0505	21.484	2	1	Median	0.58619	0.7294	NaN	1	1	Median	0.92586	0.92174	12.78	3	0	Plateau	1.0583	1.1259	11.951	2	0	Median	954520000	488230000	466290000	142670000	57473000	85193000	168810000	104860000	63950000	350020000	185220000	164800000	293020000	140670000	152350000	59028	998	55619	359590;359591;359592;359593;359594;359595;359596;359597	485476;485477;485478;485479;485480;485481;485482;485483;485484;485485;485486;485487;485488;485489;485490	485490			15	
YIMSYISR	0	Unmodified	1031.511	0.51100218	2332	Q12965	MYO1E	Unconventional myosin-Ie	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	55.749	46.368	2	1.3055E-06	25558	160513_QHF_FH_JSI10Kac_6	133.6	110.58			0.92814	0.96819	11.546	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.83672	0.96819	NaN	1	0	Median	1.0296	1.0024	NaN	1	0	Median	1.0993	1.2005	NaN	1	0	Median	120790000	58475000	62316000	0	0	0	60799000	27924000	32876000	45165000	23542000	21622000	14827000	7009500	7817300	59029	2332	55620	359598;359599;359600;359601	485491;485492;485493;485494;485495	485495			5	
YIMVPSGNMGVFDPTEIHNR	0	Oxidation (M)	2292.0667	0.066722717	5171	Q9P003	CNIH4	Protein cornichon homolog 4	yes	yes	0	0	1	0			By MS/MS		3	0			1									1		76.139	76.139	3	6.8862E-06	67884	160511_QHF_FH_JSI11i_3	76.155	68.457			1.5661	1.4566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5661	1.4566	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	38423000	19233000	19191000	0	0	0	0	0	0	38423000	19233000	19191000	0	0	0	59030	5171	55621	359602	485496	485496		2596	1	
YIMVPSGNMGVFDPTEIHNR	0	Unmodified	2276.0718	0.071808095	5171	Q9P003	CNIH4	Protein cornichon homolog 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							2	2	2	2	83.062	82.434	3	1.8449E-25	71309	160511_QHF_FH_JSI12i_2	176.11	171.84			1.0098	0.98265	12.683	7	0	Median	1.1467	0.97853	NaN	1	0	Median	0.74148	0.89593	13.065	2	0	Median	1.1327	1.1112	12.457	2	0	Median	0.95187	1.0082	13.025	2	0	Median	1353600000	692150000	661490000	174080000	116550000	57531000	315170000	172590000	142570000	524320000	237680000	286630000	340080000	165320000	174760000	59031	5171	55621	359603;359604;359605;359606;359607;359608;359609;359610	485497;485498;485499;485500;485501;485502;485503;485504;485505;485506;485507;485508;485509;485510	485499			14	
YIMVSFVDP	0	Unmodified	1069.5154	0.51541885	430	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			91.454	91.394	2	0.010062	82978	160511_QHF_FH_JSI10i_1	59.641	49.227			0.72452	0.7895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72452	0.7895	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11459000	5737900	5720600	0	0	0	11459000	5737900	5720600	0	0	0	0	0	0	59032	430	55622	359611	485511	485511			1	
YINENLIVNTDELGR	0	Unmodified	1761.8897	0.88972785	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.795	7	4	3							3	4	4	3	71.558	70.805	2;3	2.5608E-52	64468	160511_QHF_FH_JSI11i_1	222.99	206.61			0.90148	0.9898	10.013	13	1	Median	1.1735	0.99815	12.8	3	0	Median	0.82025	0.97346	8.1168	4	1	Median	1.0585	1.0379	15.244	3	0	Median	0.84332	0.90298	10.143	3	0	Plateau	1899000000	1046100000	852870000	273560000	147790000	125770000	717590000	397560000	320020000	465770000	246300000	219470000	442090000	254480000	187600000	59033	1132	55623	359612;359613;359614;359615;359616;359617;359618;359619;359620;359621;359622;359623;359624;359625	485512;485513;485514;485515;485516;485517;485518;485519;485520;485521;485522;485523;485524;485525;485526;485527;485528;485529;485530;485531;485532;485533;485534;485535	485515			24	
YINTEHGGSQAR	0	Unmodified	1331.6218	0.62182627	2675	Q15437	SEC23B	Protein transport protein Sec23B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		3	6								3	4	2	6.2432	6.0923	2;3	2.9574E-07	3690	160511_QHF_FH_JSI12i_3	136.02	131.72			0.8699	0.87582	35.725	9	4	Median	NaN	NaN	NaN	0	0	Median	0.99206	1.1917	20.308	3	1	Plateau	1.0306	1.0088	52.776	4	3	Median	0.78055	0.79216	14.2	2	0	Median	943640000	433570000	510070000	0	0	0	111130000	58007000	53124000	461760000	171000000	290760000	370750000	204560000	166190000	59034	2675	55624	359626;359627;359628;359629;359630;359631;359632;359633;359634	485536;485537;485538;485539;485540;485541;485542;485543;485544;485545;485546;485547;485548;485549	485547			14	
YINVGDLAR	0	Unmodified	1019.54	0.53999412	5590	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		48.272	47.484	2	0.0031928	41842	160511_QHF_FH_JSI10i_2	60.118	19.34			1.4472	1.3453	17.146	2	2	Median	1.4049	1.1917	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4909	1.5188	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	217370000	102320000	115050000	91402000	42929000	48473000	0	0	0	125960000	59390000	66574000	0	0	0	59035	5590	55625	359635;359636;359637	485550;485551;485552	485552			3	
YIPDAMNLILLLVTEK	1	Unmodified	1845.0322	0.032158336	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		8	8						10	8	6	6	6	103.47	100.12	2;3	8.1643E-53	53774	160513_QHF_FH_JSI9Kac_6	194.85	145.5			0.87031	0.9248	28.716	26	3	Median	0.76694	0.65445	37.798	8	2	Median	0.86752	1.0317	8.3474	6	1	Median	0.98597	0.96687	17.297	6	0	Median	0.84848	0.90597	14.775	6	0	Median	9891200000	5566300000	4324900000	4304800000	2791000000	1513800000	4458900000	2206700000	2252200000	670640000	332970000	337670000	456890000	235610000	221280000	59036	1544	55626	359638;359639;359640;359641;359642;359643;359644;359645;359646;359647;359648;359649;359650;359651;359652;359653;359654;359655;359656;359657;359658;359659;359660;359661;359662;359663	485553;485554;485555;485556;485557;485558;485559;485560;485561;485562;485563;485564;485565;485566;485567;485568;485569;485570;485571;485572;485573;485574;485575;485576;485577;485578;485579;485580;485581;485582;485583;485584;485585;485586;485587;485588;485589;485590;485591;485592;485593;485594;485595;485596;485597;485598	485583			46	
YIPDAMNLILLLVTEK	1	Oxidation (M)	1861.0271	0.027072958	1544	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	2	1	2	2	99.694	92.229	2;3	6.3526E-05	51693	160513_QHF_FH_JSI9Kac_6	84.14	68.001			1.0532	0.95576	20.588	7	3	Median	1.1026	0.94653	1.3724	2	1	Median	0.91337	1.0518	NaN	1	0	Median	0.90127	0.85709	31.674	2	1	Median	0.8133	0.84584	33.487	2	1	Median	719530000	371320000	348210000	213500000	95543000	117960000	82430000	45862000	36568000	257570000	128050000	129520000	166030000	101870000	64163000	59037	1544	55626	359664;359665;359666;359667;359668;359669;359670	485599;485600;485601;485602;485603;485604;485605	485600		1219	7	
YIPFTHGK	1	Unmodified	961.50215	0.50215205	270	O15258	RER1	Protein RER1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							2	3	2	2	30.365	29.588	2;3	0.00013051	24953	160511_QHF_FH_JSI10i_3	94.114	74.478			1.1052	1.1254	45.506	9	1	Median	1.634	1.2998	0.27615	2	0	Median	0.94975	1.109	76.806	3	0	Median	1.2321	1.1862	12.801	2	0	Median	0.98422	1.0065	15.794	2	1	Median	2684100000	1287500000	1396600000	683370000	297340000	386030000	515790000	299080000	216710000	690700000	289230000	401470000	794220000	401870000	392350000	59038	270	55627	359671;359672;359673;359674;359675;359676;359677;359678;359679	485606;485607;485608;485609;485610;485611;485612;485613;485614;485615;485616;485617;485618;485619;485620;485621;485622;485623;485624;485625	485612			20	
YIPLPQR	0	Unmodified	885.50724	0.50723743	3801	Q8WWM7	ATXN2L	Ataxin-2-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	40.932	40.072	2	0.010438	35154	160511_QHF_FH_JSI11i_3	74.832	65.082			0.92069	0.90808	57.03	5	2	Median	1.1755	0.96438	82.365	2	1	Median	1.9171	2.2282	NaN	1	1	Median	0.92069	0.87373	NaN	1	0	Median	0.91916	0.90808	NaN	1	0	Median	842880000	400120000	442750000	229150000	102030000	127120000	183150000	70046000	113100000	208810000	101200000	107620000	221770000	126850000	94912000	59039	3801	55628	359680;359681;359682;359683;359684	485626;485627;485628;485629;485630;485631	485626			6	
YIPNRGPLDK	1	Unmodified	1171.635	0.63495714	1292	P27635	RPL10	60S ribosomal protein L10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.71	4.62		3	15						3	6	6	6	3	30.387	27.959	2;3	3.1486E-05	24128	160511_QHF_FH_JSI11i_3	76.143	40.199			0.89159	0.92401	57.633	15	7	Median	1.6457	1.345	101.03	4	3	Median	0.91843	1.0647	56.802	4	2	Median	0.92319	0.87496	37.609	4	2	Median	0.89159	0.9143	7.1759	3	0	Median	10979000000	5059700000	5919200000	5115600000	2117100000	2998500000	2565100000	1316700000	1248400000	2803900000	1352800000	1451100000	494350000	273110000	221250000	59040	1292	55629	359685;359686;359687;359688;359689;359690;359691;359692;359693;359694;359695;359696;359697;359698;359699;359700;359701;359702;359703;359704;359705	485632;485633;485634;485635;485636;485637;485638;485639;485640;485641;485642;485643;485644;485645;485646;485647;485648;485649;485650;485651;485652;485653;485654;485655;485656;485657;485658;485659;485660;485661	485634			30	
YIPPGQR	0	Unmodified	829.44464	0.44463717	4302	Q99700	ATXN2	Ataxin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			12.352	11.607	2	0.040678	9092	160511_QHF_FH_JSI10i_3	47.045	16.975			1.1369	1.0828	6.4513	2	0	Median	1.3912	1.1333	NaN	1	0	Median	0.92909	1.0345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	77913000	36307000	41605000	38025000	14420000	23605000	39887000	21887000	18000000	0	0	0	0	0	0	59041	4302	55630	359706;359707	485662;485663	485662			2	
YIPPHLR	0	Unmodified	894.50757	0.50757178	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			23.735	22.447	2;3	0.0032925	18495	160511_QHF_FH_JSI10i_3	64.776	10.251			0.96027	0.95753	2.1973	2	1	Median	1.1852	0.97252	NaN	1	0	Median	0.77803	0.94277	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	122030000	64819000	57214000	42621000	17700000	24921000	79412000	47119000	32293000	0	0	0	0	0	0	59042	154	55631	359708;359709	485664;485665	485664			2	
YIPPIPVHR	0	Unmodified	1090.6287	0.62874955	2305	Q12789	GTF3C1	General transcription factor 3C polypeptide 1	yes	yes	0	0	0	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	48.266	47.412	3	0.0008694	39709	160511_QHF_FH_JSI10i_3	59.245	52.51			0.97447	0.96301	15.868	4	0	Median	1.5179	1.2733	NaN	1	0	Median	0.82639	0.94433	NaN	1	0	Median	1.0337	0.98206	NaN	1	0	Median	0.91861	0.888	NaN	1	0	Median	150680000	66888000	83788000	33921000	11500000	22421000	34902000	15407000	19495000	37055000	15282000	21772000	44799000	24699000	20100000	59043	2305	55632	359710;359711;359712;359713	485666;485667	485666			2	
YIPQQDALEDK	1	Unmodified	1318.6405	0.64049603	5627	Q9Y4F1	FARP1	FERM, RhoGEF and pleckstrin domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		40.056	39.299	2	0.00027694	35491	160511_QHF_FH_JSI11i_1	77.533	71.892			1.8073	1.6278	8.5203	2	1	Median	2.0693	1.7289	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.5786	1.5326	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	102650000	32922000	69725000	27369000	5775900	21593000	0	0	0	75278000	27146000	48132000	0	0	0	59044	5627	55633	359714;359715	485668;485669	485668			2	
YIQAACK	1	Unmodified	852.41637	0.41637351	2155;1807	P53675;Q00610	CLTCL1;CLTC	Clathrin heavy chain 2;Clathrin heavy chain 1	no	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3.86	4.16		5	1				1				3	1	3	9.266	8.7506	2	0.0064979	6498	160511_QHF_FH_JSI11i_2	91.584	37.059			0.22518	0.22632	171.2	5	5	Median	NaN	NaN	NaN	0	0	Median	0.6374	0.77839	262.2	2	2	Median	0.22518	0.22632	NaN	1	1	Median	0.72851	0.80313	189.62	2	2	Median	779860000	487070000	292780000	0	0	0	186410000	100540000	85870000	235330000	178200000	57124000	358120000	208330000	149790000	59045	1807;2155	55634	359716;359717;359718;359719;359720;359721;359722	485670;485671;485672;485673;485674;485675;485676	485673			7	
YIQAEPPTNK	1	Unmodified	1159.5873	0.58733824	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	20.797	20.504	2	6.516E-10	17688	160511_QHF_FH_JSI10i_1	138.4	77.636			0.91901	1.0823	13.824	3	0	Median	NaN	NaN	NaN	0	0	Median	0.91901	1.0823	NaN	1	0	Median	1.2032	1.1461	NaN	1	0	Median	0.83014	0.88118	NaN	1	0	Median	290150000	141790000	148360000	0	0	0	89666000	47222000	42444000	106960000	49673000	57288000	93522000	44899000	48623000	59046	3685	55635	359723;359724;359725	485677;485678;485679	485679			3	
YIQDFQR	0	Unmodified	968.47158	0.4715802	1117	P17480	UBTF	Nucleolar transcription factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									1	2	2	24.445	23.621	2	0.0035087	19513	160511_QHF_FH_JSI12i_2	92.677	71.13			0.37989	0.38025	13.321	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.33205	0.40862	NaN	1	1	Median	0.37989	0.38025	NaN	1	1	Median	0.44438	0.49224	NaN	1	1	Median	295820000	186620000	109210000	0	0	0	86622000	59125000	27497000	105830000	69539000	36289000	103370000	57953000	45420000	59047	1117	55636	359726;359727;359728;359729;359730	485680;485681;485682;485683;485684	485681			5	
YIQEAEMLR	0	Unmodified	1151.5645	0.56449431	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	1	2	1	41.496	40.601	2	0.00085786	35395	160511_QHF_FH_JSI9i_2	95.909	79.133			0.58009	0.54294	60.225	6	6	Median	1.1003	0.93235	61.926	2	2	Median	0.30323	0.37655	NaN	1	1	Median	0.82948	0.85841	79.323	2	2	Median	0.40618	0.46389	NaN	1	1	Median	377320000	217600000	159730000	109850000	56273000	53581000	60711000	47400000	13311000	153340000	79333000	74006000	53416000	34588000	18828000	59048	2226	55637	359731;359732;359733;359734;359735;359736	485685;485686;485687;485688;485689;485690	485686			6	
YIQELWR	0	Unmodified	1006.5236	0.52361577	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.458		7	3							2	2	3	3	51.894	51.035	2	2.9803E-06	44063	160511_QHF_FH_JSI11i_2	158.38	137.82			0.91137	0.76036	71.309	10	8	Median	0.93733	0.76036	15.541	2	1	Median	1.0469	1.256	108.7	2	2	Median	0.626	0.57461	80.949	3	3	Median	0.97644	0.98221	93.893	3	2	Median	14297000000	6786600000	7510400000	1379500000	524570000	854920000	3421900000	1629700000	1792200000	6061600000	3034000000	3027600000	3434000000	1598300000	1835700000	59049	1951	55638	359737;359738;359739;359740;359741;359742;359743;359744;359745;359746	485691;485692;485693;485694;485695;485696;485697;485698;485699;485700;485701;485702;485703	485700			13	
YIQELWRK	1	Unmodified	1134.6186	0.61857879	1951	P61313	RPL15	60S ribosomal protein L15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		41.861	40.325	3	0.0011785	32894	160511_QHF_FH_JSI9i_3	73.665	59.662			1.8826	1.5636	NaN	1	1	Median	1.8826	1.5636	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74583000	33501000	41081000	74583000	33501000	41081000	0	0	0	0	0	0	0	0	0	59050	1951	55639	359747;359748;359749	485704;485705;485706	485706			3	
YIQEQNEK	1	Unmodified	1050.4982	0.49818889	3280	Q7Z5G4;Q2TAP0	GOLGA7;GOLGA7B	Golgin subfamily A member 7;Golgin subfamily A member 7B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	7.3853	7.0167	2	0.00018323	4709	160511_QHF_FH_JSI11i_1	136.11	108.59			4.0183	4.087	59.477	3	3	Plateau	1.7634	1.4498	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	4.7239	4.5308	NaN	1	1	Median	1.8031	1.9067	NaN	1	1	Median	111070000	34089000	76981000	43466000	20023000	23443000	0	0	0	31602000	3682100	27920000	36002000	10384000	25618000	59051	3280	55640	359750;359751;359752;359753	485707;485708;485709;485710	485707			4	
YIQHTYR	0	Unmodified	979.48756	0.48756462	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	5.17	4.84			5						1	2	3		1	9.3551	7.8511	2;3	0.0006967	6117	160511_QHF_FH_JSI10i_3	102.72	71.43			0.9241	0.98465	24.97	6	1	Median	1.414	1.1558	16.972	2	0	Median	0.82044	0.94582	15.012	3	0	Median	NaN	NaN	NaN	0	0	Median	0.64246	0.64093	NaN	1	1	Median	978400000	399410000	578990000	479550000	152340000	327210000	422770000	199880000	222890000	0	0	0	76082000	47195000	28887000	59052	1773	55641	359754;359755;359756;359757;359758;359759	485711;485712;485713;485714;485715;485716;485717;485718;485719	485712			9	
YIQPWESEFIDSQR	0	Unmodified	1796.837	0.836964	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	75.426	74.571	2	1.9669E-06	66289	160511_QHF_FH_JSI10i_2	130.56	122.46			1.129	1.1495	9.63	4	0	Median	1.4334	1.202	NaN	1	0	Median	0.91274	1.0992	NaN	1	0	Median	1.0729	1.0777	NaN	1	0	Median	1.1881	1.3303	NaN	1	0	Median	417660000	193440000	224210000	67666000	24501000	43164000	119800000	62968000	56835000	143070000	59903000	83170000	87114000	46069000	41045000	59053	3101	55642	359760;359761;359762;359763	485720;485721;485722;485723;485724;485725;485726	485726			7	
YIQQTKPLTLER	1	Acetyl (K)	1530.8406	0.84059282	379	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14.3	0.471							2	1			1	2		62.862	51.968	2	0.00075322	28246	160513_QHF_FH_JSI11Kac_5	85.377	58.863			0.37845	0.36706	17.711	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37845	0.36706	17.711	2	0	Median	NaN	NaN	NaN	0	0	Median	7180500	5385700	1794800	0	0	0	1192800	1192800	0	5987700	4192900	1794800	0	0	0	59054	379	55643	359764;359765;359766	485727;485728;485729;485730	485729	197		4	
YISAAPGAEAK	1	Unmodified	1076.5502	0.55022446	2555;3692	Q14671;Q8TB72	PUM1;PUM2	Pumilio homolog 1;Pumilio homolog 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	4.23	5	2					1			2	2	3	1	19.62	18.218	2	8.2525E-05	15824	160511_QHF_FH_JSI12i_1	90.108	59.372			1.0171	0.90244	45.196	8	6	Median	1.006	0.86206	0.19777	2	1	Median	0.84717	1.0012	104.09	2	2	Median	1.0549	1.0603	29.706	3	3	Median	0.79391	0.81697	NaN	1	0	Median	634850000	331850000	303000000	110800000	68142000	42657000	249780000	146940000	102850000	146730000	55526000	91208000	127540000	61250000	66287000	59055	2555;3692	55644	359767;359768;359769;359770;359771;359772;359773;359774	485731;485732;485733;485734;485735;485736;485737;485738;485739;485740	485733			10	
YISAAPGAEAKYR	1	Acetyl (K)	1437.7252	0.72522871	2555;3692	Q14671;Q8TB72	PUM1;PUM2	Pumilio homolog 1;Pumilio homolog 2	no	no	1	0	0	1			By MS/MS		14.5	0.5							1	1				2		46.587	36.189	2	0.0046277	21522	160513_QHF_FH_JSI11Kac_4	63.283	36.769			0.25864	0.25403	58.154	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25864	0.25403	58.154	2	1	Median	NaN	NaN	NaN	0	0	Median	5871600	4107900	1763700	0	0	0	0	0	0	5871600	4107900	1763700	0	0	0	59056	2555;3692	55645	359775;359776	485741;485742;485743	485742	2536		3	
YISFEER	0	Unmodified	942.4447	0.44469675	2513	Q14192	FHL2	Four and a half LIM domains protein 2	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		31.53	30.743	2	0.052111	26023	160511_QHF_FH_JSI11i_2	42.474	26.838			1.0394	1.0422	13.063	3	0	Median	1.2597	1.0642	NaN	1	0	Median	0.68027	0.84048	NaN	1	0	Median	1.0394	1.0422	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	386760000	188050000	198700000	90467000	38095000	52372000	94440000	49743000	44697000	201850000	100210000	101640000	0	0	0	59057	2513	55646	359777;359778;359779	485744	485744			1	
YISGSIHYSR	0	Unmodified	1181.5829	0.58292157	1094	P16278	GLB1	Beta-galactosidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.4	6.43			3						4	2	2	1	2	26.244	20.981	3	0.00010234	12152	160513_QHF_FH_JSI10Kac_6	88.441	63.586			1.0782	1.0506	18.751	7	1	Median	1.1774	0.98077	8.7961	2	0	Median	1.0894	1.2733	35.98	2	1	Median	1.1791	1.1629	NaN	1	0	Median	0.9941	1.0709	2.6976	2	0	Median	182070000	86728000	95344000	58366000	20976000	37390000	79021000	41198000	37823000	12857000	6001000	6855600	31830000	18554000	13276000	59058	1094	55647	359780;359781;359782;359783;359784;359785;359786	485745;485746;485747;485748;485749;485750;485751;485752;485753;485754;485755	485755			11	
YISKPENLK	2	Unmodified	1090.6023	0.60226003	5561	Q9Y376	CAB39	Calcium-binding protein 39	no	no	0	0	0	1				By MS/MS	3	0			2										2	16.816	16.861	2;3	0.0014691	13642	160511_QHF_FH_JSI12i_3	113.71	85.498			2.181	2.2105	164.46	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.181	2.2105	164.46	2	2	Median	354480000	99036000	255450000	0	0	0	0	0	0	0	0	0	354480000	99036000	255450000	59059	5561	55648	359787;359788	485756;485757	485757			2	
YISPDQLADLYK	1	Unmodified	1424.7187	0.71874635	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	6.23	18	4	6			3	3	4	4	11	10	10	11	73.716	69.558	2;3	2.6495E-31	65647	160511_QHF_FH_JSI9i_2	188.28	179.06			0.86666	0.87039	33.54	40	18	Median	0.94963	0.83069	40.318	11	5	Median	0.75224	0.90074	28.171	9	2	Median	0.83408	0.8303	29.904	9	5	Median	0.85843	0.94641	37.256	11	6	Median	107740000000	48196000000	59543000000	21297000000	8625700000	12672000000	29638000000	15159000000	14479000000	28359000000	13360000000	14999000000	28444000000	11051000000	17393000000	59060	854	55649	359789;359790;359791;359792;359793;359794;359795;359796;359797;359798;359799;359800;359801;359802;359803;359804;359805;359806;359807;359808;359809;359810;359811;359812;359813;359814;359815;359816;359817;359818;359819;359820;359821;359822;359823;359824;359825;359826;359827;359828;359829;359830	485758;485759;485760;485761;485762;485763;485764;485765;485766;485767;485768;485769;485770;485771;485772;485773;485774;485775;485776;485777;485778;485779;485780;485781;485782;485783;485784;485785;485786;485787;485788;485789;485790;485791;485792;485793;485794;485795;485796;485797;485798;485799;485800;485801;485802;485803;485804;485805;485806;485807;485808;485809;485810;485811;485812;485813;485814;485815;485816;485817;485818;485819;485820;485821;485822;485823;485824;485825;485826;485827;485828;485829;485830;485831;485832;485833;485834;485835;485836;485837;485838;485839;485840;485841;485842;485843;485844	485823			87	
YISPDQLADLYKSFIK	2	Acetyl (K)	1942.0088	0.0087803574	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1			By MS/MS	By MS/MS	16	0									4			2	2	97.28	87.855	2;3	1.5029E-103	50089	160513_QHF_FH_JSI11Kac_6	254.4	206.51			0.27425	0.26003	45.716	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27425	0.26003	5.3021	2	0	Median	0.22111	0.2371	78.463	2	1	Median	1818300000	1404300000	413990000	0	0	0	0	0	0	1641000000	1252800000	388210000	177260000	151480000	25778000	59061	854	55650	359831;359832;359833;359834	485845;485846;485847;485848;485849;485850;485851	485846	529		7	
YISWTEQNYPQGGK	1	Unmodified	1669.7736	0.77363546	429	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	48.493	47.095	2	0.01762	40208	160511_QHF_FH_JSI12i_2	51.092	19.495			1.8096	1.8923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8096	1.8923	NaN	1	1	Median	16877000	3257400	13620000	0	0	0	0	0	0	0	0	0	16877000	3257400	13620000	59062	429	55651	359835	485852	485852			1	
YITASTFAQAR	0	Unmodified	1227.6248	0.62478638	4288	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.33	6.67		1	2						3	2	2	2		44.828	39.822	2	0.001377	21596	160513_QHF_FH_JSI11Kac_6	77.677	64.411			1.0171	0.95803	47.685	6	4	Median	1.8399	1.5446	74.96	2	1	Median	0.70251	0.85495	42.513	2	2	Median	1.0171	0.95803	1.8516	2	1	Median	NaN	NaN	NaN	0	0	Median	257110000	113040000	144070000	28634000	5848700	22785000	108070000	54885000	53180000	120410000	52304000	68108000	0	0	0	59063	4288	55652	359836;359837;359838;359839;359840;359841	485853;485854;485855;485856;485857;485858	485854			6	
YITDWQNVFR	0	Unmodified	1340.6513	0.65133548	503	O75340	PDCD6	Programmed cell death protein 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	78.956	75.678	2	2.1831E-14	69110	160511_QHF_FH_JSI11i_3	164.96	159.17			0.99476	1.0026	21.803	12	1	Median	0.86209	0.73595	14.38	3	0	Plateau	0.70645	0.8624	14.94	3	0	Plateau	1.1865	1.1486	19.066	3	0	Median	0.99683	1.0597	29.408	3	1	Plateau	4523100000	2309200000	2213900000	634610000	298940000	335670000	989970000	522270000	467700000	1842700000	904570000	938110000	1055800000	583400000	472410000	59064	503	55653	359842;359843;359844;359845;359846;359847;359848;359849;359850;359851;359852;359853	485859;485860;485861;485862;485863;485864;485865;485866;485867;485868;485869;485870;485871;485872;485873;485874;485875;485876;485877;485878;485879;485880	485859			22	
YITEPEMVFEEHEVNEDIQPMTAFESEK	1	Unmodified	3370.4897	0.48974055	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	96.518	96.356	3	7.8716E-12	85846	160511_QHF_FH_JSI11i_3	84.933	78.638			1.0697	1.0723	16.2	6	1	Median	1.3397	1.1747	NaN	1	1	Median	0.80571	0.99562	NaN	1	0	Median	1.0697	1.0408	14.703	2	0	Median	1.0364	1.0761	30.69	2	0	Median	169960000	82178000	87786000	17557000	5248800	12308000	23845000	14301000	9543400	56177000	29151000	27026000	72386000	33477000	38909000	59065	2314	55654	359854;359855;359856;359857;359858;359859;359860	485881;485882;485883;485884;485885;485886;485887;485888;485889;485890;485891;485892;485893;485894;485895;485896	485881			16	
YITGTDILDMK	1	Unmodified	1268.6322	0.63223953	5570	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		69.944	69.622	2	5.1685E-07	63045	160511_QHF_FH_JSI10i_1	114.97	60.811			1.0339	1.1126	30.813	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75433	0.89474	NaN	1	0	Median	1.4172	1.3834	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109340000	62171000	47171000	0	0	0	55595000	32590000	23005000	53747000	29582000	24165000	0	0	0	59066	5570	55655	359861;359862	485897;485898	485898			2	
YITKSGTR	1	Acetyl (K)	966.51345	0.51344502	856;75	P06744;CON__Q3ZBD7	GPI	Glucose-6-phosphate isomerase	no	no	1	0	0	1			By MS/MS		14	0							1					1		17.834	10.212	2	0.0435	7707	160513_QHF_FH_JSI11Kac_4	50.04	40.402		+	0.44926	0.44794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44926	0.44794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8339700	6199900	2139800	0	0	0	0	0	0	8339700	6199900	2139800	0	0	0	59067	856;75	55656	359863	485899	485899			1	
YITQNGDYQLR	0	Unmodified	1369.6626	0.66262845	4524	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	34.628	33.849	2	3.7897E-13	29715	160511_QHF_FH_JSI10i_2	148.96	125.64			0.91268	0.90788	19.8	6	2	Median	0.93968	0.80248	NaN	1	0	Median	0.75397	0.88854	31.634	2	1	Median	1.058	1.0632	NaN	1	0	Median	0.79717	0.87279	23.027	2	1	Median	425020000	222460000	202560000	66354000	34184000	32170000	119730000	63014000	56713000	122220000	57838000	64380000	116720000	67428000	49295000	59068	4524	55657	359864;359865;359866;359867;359868;359869;359870	485900;485901;485902;485903;485904;485905;485906;485907;485908;485909;485910;485911	485911			12	
YITTIAGVMTLSQVK	1	Unmodified	1623.8906	0.89057948	1260	P25445	FAS	Tumor necrosis factor receptor superfamily member 6	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		83.371	77.778	2	1.5958E-23	41794	160513_QHF_FH_JSI11Kac_6	155.15	129.21			1.1255	1.3655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1255	1.3655	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	21138000	16190000	4948000	0	0	0	21138000	16190000	4948000	0	0	0	0	0	0	59069	1260	55658	359871;359872	485912;485913	485912			2	
YIVAYHAAGK	1	Unmodified	1091.5764	0.57637963	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	8.2	6.37			6						4	2		5	3	27.279	23.644	2;3	8.2819E-05	19460	160511_QHF_FH_JSI12i_3	86.794	64.054			1.1236	0.97727	71.163	9	4	Median	1.138	0.97727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1236	1.131	59.307	5	3	Median	0.95524	0.94384	110.67	3	1	Median	463240000	223180000	240050000	10054000	5311700	4742000	0	0	0	229780000	103400000	126380000	223400000	114470000	108930000	59070	4202	55659	359873;359874;359875;359876;359877;359878;359879;359880;359881;359882	485914;485915;485916;485917;485918;485919;485920;485921;485922;485923	485922			10	
YIVAYHAAGKK	2	Unmodified	1219.6713	0.67134264	4202	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	yes	yes	0	0	0	1	By MS/MS			By MS/MS	3	0			5							2			3	16.996	16.441	2;3	8.3701E-05	12652	160511_QHF_FH_JSI12i_3	98.392	73.538			1.269	1.1655	40.188	2	1	Median	1.8759	1.5486	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85838	0.87723	NaN	1	0	Median	101400000	43312000	58092000	33008000	14128000	18880000	0	0	0	0	0	0	68395000	29184000	39212000	59071	4202	55660	359883;359884;359885;359886;359887	485924;485925;485926;485927;485928	485927			5	
YIVFVTNYPLTISGK	1	Unmodified	1713.9342	0.93415885	4007	Q96CM8	ACSF2	Acyl-CoA synthetase family member 2, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.54	6.98		6							7	4	3	3	3	91.458	86.674	2;3	6.0539E-103	43833	160513_QHF_FH_JSI11Kac_6	248.41	230.74			1.0537	1.0085	23.268	13	6	Median	1.0726	0.9368	27.584	4	2	Median	0.7404	0.87076	33.102	3	2	Median	1.0826	1.0661	1.6881	3	1	Median	1.0626	1.1269	7.9911	3	1	Plateau	2036400000	928880000	1107600000	568170000	254410000	313750000	371940000	213840000	158110000	636400000	254310000	382090000	459940000	206320000	253610000	59072	4007	55661	359888;359889;359890;359891;359892;359893;359894;359895;359896;359897;359898;359899;359900	485929;485930;485931;485932;485933;485934;485935;485936;485937;485938;485939;485940;485941;485942;485943;485944;485945	485931			16	
YIVIEPTR	0	Unmodified	989.55458	0.55458155	1110	P17152	TMEM11	Transmembrane protein 11, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	41.123	39.752	2	0.016878	33990	160511_QHF_FH_JSI12i_2	65.252	6.5913			0.43249	0.48758	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.43249	0.48758	NaN	1	1	Median	114530000	79049000	35483000	0	0	0	0	0	0	0	0	0	114530000	79049000	35483000	59073	1110	55662	359901	485946	485946			1	
YIVLHFGR	0	Unmodified	1003.5603	0.56033563	2434	Q13535	ATR	Serine/threonine-protein kinase ATR	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	59.414	50.118	3	0.00041969	27417	160513_QHF_FH_JSI10Kac_6	90.777	82.645			0.94593	0.93245	15.44	4	0	Median	0.88626	0.76607	NaN	1	0	Median	0.74712	0.88235	NaN	1	0	Median	1.0096	0.9854	NaN	1	0	Median	1.0158	1.0991	NaN	1	0	Median	254400000	142590000	111810000	30181000	15598000	14583000	168250000	100710000	67535000	31581000	15133000	16448000	24394000	11150000	13243000	59074	2434	55663	359902;359903;359904;359905	485947;485948;485949;485950	485950			2	
YIVNGSHEANK	1	Unmodified	1230.5993	0.59929991	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							3	2	5	3	10.089	9.7518	2;3	9.4043E-06	7081	160511_QHF_FH_JSI12i_3	126.07	72.897			1.0133	1.005	29.804	10	7	Median	0.97054	0.86074	18.213	2	2	Median	0.7379	0.90581	44.856	2	0	Median	1.1079	1.1175	31.098	4	3	Median	0.86644	0.967	42.706	2	2	Median	445830000	222320000	223510000	66804000	32442000	34362000	116590000	63943000	52649000	185820000	92393000	93428000	76615000	33547000	43068000	59075	1839	55664	359906;359907;359908;359909;359910;359911;359912;359913;359914;359915;359916;359917;359918	485951;485952;485953;485954;485955;485956;485957;485958;485959;485960;485961;485962;485963	485963			13	
YIVPMLTVDGK	1	Unmodified	1234.6631	0.66314572	1054	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	4.21	3	4	1					1		1	2	4	2	75.57	73.465	2	2.4898E-09	64037	160511_QHF_FH_JSI12i_2	129.38	98.01			0.75307	0.82847	17.972	7	3	Median	0.83247	0.70752	NaN	1	0	Median	0.65393	0.79354	22.667	2	1	Median	0.8999	0.89487	10.904	2	1	Median	0.6605	0.70585	25.048	2	1	Median	1381600000	771330000	610310000	198600000	109980000	88616000	409930000	236550000	173380000	394450000	209210000	185240000	378660000	215580000	163070000	59076	1054	55665	359919;359920;359921;359922;359923;359924;359925;359926;359927	485964;485965;485966;485967;485968;485969;485970;485971;485972;485973;485974;485975	485967			12	
YIVQVDGK	1	Unmodified	920.49673	0.49673232	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	2									1	1			32.952	32.157	2	0.002353	28620	160511_QHF_FH_JSI10i_1	89.296	52.275			0.73853	0.72865	0.062679	2	1	Median	0.87317	0.72897	NaN	1	0	Median	0.62465	0.72833	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	232440000	156180000	76262000	95813000	58109000	37704000	136630000	98070000	38558000	0	0	0	0	0	0	59077	5158	55666	359928;359929	485976;485977	485976			2	
YIVSAWYNMGMTLHK	1	Unmodified	1812.8691	0.86913253	3345	Q86VS8	HOOK3	Protein Hook homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			80.813	73.192	3	2.3247E-05	40969	160513_QHF_FH_JSI10Kac_6	97.797	96.611			1.0813	1.1317	87.592	3	2	Median	2.3854	2.0533	113.92	2	2	Median	0.9491	1.1317	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	184070000	72545000	111530000	108570000	32116000	76455000	75500000	40428000	35072000	0	0	0	0	0	0	59078	3345	55667	359930;359931;359932	485978;485979;485980	485980			3	
YIYDQCPAVAGYGPIEQLPDYNR	0	Unmodified	2701.2483	0.24825214	1379	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	84.276	83.939	3	3.139E-08	76269	160511_QHF_FH_JSI10i_1	78.202	74.964			1.3668	1.5283	24.499	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3668	1.5929	NaN	1	0	Median	1.0565	1.0223	NaN	1	0	Median	1.4506	1.5283	NaN	1	0	Median	165530000	74986000	90539000	0	0	0	51248000	25991000	25257000	52169000	23220000	28949000	62108000	25775000	36333000	59079	1379	55668	359933;359934;359935	485981;485982;485983;485984;485985	485985			5	
YIYDSAFHPDTGEK	1	Unmodified	1641.7311	0.73110195	4806	Q9H9B4	SFXN1	Sideroflexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.21	4.86	3	13	4					4		4	7	6	7	46.203	43.27	2;3	8.8368E-15	37378	160511_QHF_FH_JSI11i_2	161.99	142.67			1.1111	1.0602	36.081	19	4	Median	1.3436	1.1217	31.889	4	1	Median	0.91394	1.0419	56.592	5	0	Median	1.1144	1.0937	6.9507	5	0	Median	0.95594	0.96154	42.84	5	3	Median	3181700000	1488600000	1693100000	537790000	213360000	324430000	791900000	479200000	312700000	1338400000	584230000	754140000	513680000	211810000	301870000	59080	4806	55669	359936;359937;359938;359939;359940;359941;359942;359943;359944;359945;359946;359947;359948;359949;359950;359951;359952;359953;359954;359955;359956;359957;359958;359959	485986;485987;485988;485989;485990;485991;485992;485993;485994;485995;485996;485997;485998;485999;486000;486001;486002;486003;486004;486005;486006;486007;486008;486009;486010;486011;486012;486013;486014;486015;486016;486017;486018;486019;486020;486021	486010			34	
YIYFYEK	1	Unmodified	1024.4906	0.49058431	4212	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.65		2	1					1	3	2	2	1	2	56.509	50.322	2	0.011867	26172	160513_QHF_FH_JSI12Kac_6	79.597	31.093			1.0368	0.92112	58.757	7	3	Median	1.057	0.91034	0.44395	2	0	Median	1.7538	2.081	36.1	2	2	Median	0.99832	0.96987	NaN	1	0	Median	0.55928	0.60526	59.388	2	1	Median	632910000	320000000	312910000	84350000	41800000	42550000	199160000	82750000	116410000	85948000	40820000	45128000	263460000	154630000	108830000	59081	4212	55670	359960;359961;359962;359963;359964;359965;359966	486022;486023;486024;486025;486026;486027	486027			6	
YIYIMGIQER	0	Unmodified	1284.6536	0.65364367	1225	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.5	6.06		2							6	3	3	1	1	72.817	66.266	2	2.2953E-09	36423	160513_QHF_FH_JSI10Kac_6	131.41	62.493			1.1417	1.0748	41.714	8	4	Median	1.1887	1.0435	7.028	3	2	Median	2.1125	2.5695	53.574	3	2	Plateau	0.75284	0.72291	NaN	1	0	Median	1.0965	1.1602	NaN	1	0	Median	730360000	305010000	425350000	217310000	98207000	119110000	351630000	119300000	232330000	107880000	62499000	45386000	53538000	25005000	28533000	59082	1225	55671	359967;359968;359969;359970;359971;359972;359973;359974	486028;486029;486030;486031;486032;486033;486034;486035;486036;486037	486037			10	
YIYVADILAHEIHVLEK	1	Unmodified	2025.0935	0.09351304	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13	5.62		1	1						7	2	3	2	2	95.061	88.684	3;4	6.3128E-24	47362	160513_QHF_FH_JSI9Kac_6	147.56	130.07			0.979	0.90675	50.154	9	4	Median	1.4368	1.2282	57.24	2	1	Median	0.5566	0.69125	42.335	3	2	Median	1.4864	1.4138	29.716	2	1	Median	1.196	1.2184	41.779	2	0	Median	1766900000	749860000	1017000000	435450000	118520000	316930000	472820000	301410000	171420000	434070000	163450000	270620000	424530000	166480000	258050000	59083	2639	55672	359975;359976;359977;359978;359979;359980;359981;359982;359983	486038;486039;486040;486041;486042;486043;486044;486045;486046;486047;486048	486042			11	
YIYYLITK	1	Unmodified	1075.5954	0.59538373	5647	Q9Y530	OARD1	O-acetyl-ADP-ribose deacetylase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.6	0.484								3	5	4	2	2		73.332	63.945	2	0.0038269	34012	160513_QHF_FH_JSI9Kac_6	86.794	73.757			1.2381	1.0361	238.42	8	8	Median	1.2877	1.0361	256.26	4	4	Median	0.47377	0.56651	293.61	2	2	Median	0.7905	0.76744	335.96	2	2	Median	NaN	NaN	NaN	0	0	Median	415060000	225630000	189430000	136690000	62612000	74081000	83440000	70482000	12958000	194930000	92538000	102390000	0	0	0	59084	5647	55673	359984;359985;359986;359987;359988;359989;359990;359991	486049;486050;486051;486052;486053;486054;486055;486056;486057	486056			9	
YKAEDEK	2	Unmodified	881.41306	0.41306227	985	P11142	HSPA8	Heat shock cognate 71 kDa protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.11	4.91	4	8	3					3		3	6	5	4	4.6654	2.809	2;3	0.0036679	2075	160511_QHF_FH_JSI12i_2	82.452	15.771			2.0289	2.1511	61.535	18	2	Linear	1.263	1.0512	6.7607	3	0	Plateau	0.74589	0.87726	29.34	6	1	Median	1.1846	1.1388	117.44	5	1	Median	0.96559	1.0404	15.671	4	0	Median	32703000000	16348000000	16355000000	6025800000	2505400000	3520500000	8839500000	5028000000	3811500000	9731100000	4853200000	4877900000	8106700000	3961200000	4145500000	59085	985	55674	359992;359993;359994;359995;359996;359997;359998;359999;360000;360001;360002;360003;360004;360005;360006;360007;360008;360009	486058;486059;486060;486061;486062;486063;486064;486065;486066;486067;486068;486069;486070;486071;486072;486073;486074;486075;486076;486077;486078;486079;486080	486061			23	
YKAEDEVQR	1	Unmodified	1136.5462	0.54620171	954;1416	P0DMV9;P0DMV8;P34931	HSPA1B;HSPA1A;HSPA1L	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like	no	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.68	5.64	2	8	6				1	5		4	5	8	5	9.8348	7.1144	2;3	2.8489E-07	6492	160511_QHF_FH_JSI10i_2	127.4	95.077			0.94503	0.93627	17.696	22	1	Median	1.1261	0.95015	24.178	4	0	Median	0.7498	0.86368	14.953	5	0	Median	0.92528	0.91216	15.878	8	1	Median	0.96137	1.048	8.2237	5	0	Median	9787100000	4723000000	5064000000	1307400000	406980000	900440000	1451300000	779740000	671550000	4026600000	2009200000	2017300000	3001800000	1527100000	1474700000	59086	954;1416	55675	360010;360011;360012;360013;360014;360015;360016;360017;360018;360019;360020;360021;360022;360023;360024;360025;360026;360027;360028;360029;360030;360031	486081;486082;486083;486084;486085;486086;486087;486088;486089;486090;486091;486092;486093;486094;486095;486096;486097;486098;486099;486100;486101;486102;486103;486104;486105;486106;486107;486108;486109;486110	486106			30	
YKAEDEVQRER	1	Unmodified	1421.6899	0.68990583	954	P0DMV9;P0DMV8	HSPA1B;HSPA1A	Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A	yes	no	0	0	0	2	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			9.8997	9.3475	3	0.011838	7735	160511_QHF_FH_JSI9i_2	50.354	29.769			1.7806	1.7542	75.146	2	1	Median	3.5721	2.9843	NaN	1	1	Median	0.88754	1.0311	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	350620000	102910000	247710000	227700000	35089000	192610000	122920000	67820000	55098000	0	0	0	0	0	0	59087	954	55676	360032;360033	486111;486112	486112			2	
YKDAIHFYNK	2	Acetyl (K)	1339.6561	0.65608651	1386	P31948	STIP1	Stress-induced-phosphoprotein 1	yes	yes	1	0	0	1			By MS/MS		16	0									2			2		51.311	41.591	3	0.027524	22538	160513_QHF_FH_JSI11Kac_6	41.109	33.739			0.27154	0.26285	253.97	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27154	0.26285	253.97	2	2	Median	NaN	NaN	NaN	0	0	Median	17438000	10572000	6865900	0	0	0	0	0	0	17438000	10572000	6865900	0	0	0	59088	1386	55677	360034;360035	486113;486114	486114	1333		2	
YKDPQDENK	2	Unmodified	1135.5146	0.51456723	4091	Q96GG9;Q6PH85	DCUN1D1;DCUN1D2	DCN1-like protein 1;DCN1-like protein 2	yes	no	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	5.4832	5.0921	2	0.0009045	3108	160511_QHF_FH_JSI11i_1	96.668	61.23			1.0658	1.1981	49.589	3	2	Plateau	1.1759	1.0332	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.611	2.6012	NaN	1	1	Median	1.0658	1.1981	NaN	1	0	Median	109570000	44672000	64898000	33243000	11757000	21486000	0	0	0	26821000	7597600	19224000	49506000	25318000	24188000	59089	4091	55678	360036;360037;360038;360039	486115;486116;486117;486118	486115			4	
YKEALLGR	1	Acetyl (K)	990.54983	0.54983053	1773	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		47.272	36.842	2	0.033124	20662	160513_QHF_FH_JSI11Kac_5	55.37	32.441			0.24603	0.24143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24603	0.24143	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10189000	7719900	2469500	0	0	0	0	0	0	10189000	7719900	2469500	0	0	0	59090	1773	55679	360040	486119	486119			1	
YKEEFEK	2	Unmodified	971.46001	0.46001246	2579	Q14847	LASP1	LIM and SH3 domain protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.03		6	2					1		2	1	4	2	12.774	11.41	2;3	0.0037812	9241	160511_QHF_FH_JSI12i_2	77.058	36.029			1.273	1.0963	63.391	9	3	Median	1.3071	1.1197	2.9812	2	0	Median	0.4445	0.5497	NaN	1	1	Median	1.1349	1.1432	49.714	4	1	Median	1.8291	1.9698	115.08	2	1	Median	2903200000	1512100000	1391100000	498710000	224860000	273850000	427740000	259600000	168130000	1268600000	695330000	573290000	708120000	332300000	375820000	59091	2579	55680	360041;360042;360043;360044;360045;360046;360047;360048;360049	486120;486121;486122;486123;486124;486125;486126;486127;486128;486129	486122			10	
YKEELIEK	2	Unmodified	1050.5597	0.55972651	5450	Q9UNX3	RPL26L1	60S ribosomal protein L26-like 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		2								1	1			21.987	21.084	2	0.030035	17936	160511_QHF_FH_JSI9i_2	99.802	27.317			1.3258	1.3597	44.971	2	2	Median	1.145	0.98935	NaN	1	1	Median	1.5351	1.8688	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108020000	46187000	61837000	56124000	27693000	28431000	51900000	18493000	33406000	0	0	0	0	0	0	59092	5450	55681	360050;360051	486130;486131	486130			2	
YKEETIEK	2	Unmodified	1038.5233	0.523341	1949	P61254	RPL26	60S ribosomal protein L26	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.44	5.6	3	11	6				1	6		3	8	9	7	11.574	8.8629	2;3	0.00032126	5928	160513_QHF_FH_JSI11Kac_5	93.111	77.96			0.79859	0.85255	90.255	27	16	Median	0.99885	0.85255	16.134	3	1	Median	0.51655	0.62036	84.726	8	5	Median	0.8977	0.89589	106.98	9	5	Median	0.77174	0.77178	98.013	7	5	Median	20341000000	11013000000	9327700000	2142000000	879500000	1262500000	4241100000	2800000000	1441200000	5766900000	3455100000	2311700000	8191100000	3878800000	4312300000	59093	1949	55682	360052;360053;360054;360055;360056;360057;360058;360059;360060;360061;360062;360063;360064;360065;360066;360067;360068;360069;360070;360071;360072;360073;360074;360075;360076;360077;360078	486132;486133;486134;486135;486136;486137;486138;486139;486140;486141;486142;486143;486144;486145;486146;486147;486148;486149;486150;486151;486152;486153;486154;486155;486156;486157;486158	486148			27	
YKEETIEKMQE	2	Acetyl (K);Oxidation (M)	1484.6705	0.67047553	1949	P61254	RPL26	60S ribosomal protein L26	yes	yes	1	0	1	2		By MS/MS		By MS/MS	13.7	0.471						1	2				1		2	32.677	24.052	2	0.015374	14072	160513_QHF_FH_JSI10Kac_4	65.347	47.035			0.428	0.46358	1.4178	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.428	0.46358	1.4178	2	0	Median	5731600	3514300	2217300	0	0	0	0	0	0	0	0	0	5731600	3514300	2217300	59094	1949	55683	360079;360080;360081	486159;486160;486161	486159	1959	1620	2	
YKEEYAVLISEAQAIK	2	Unmodified	1853.9775	0.97748023	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	2	3	75.707	75.003	3	2.0225E-05	64931	160511_QHF_FH_JSI12i_3	95.347	77.209			1.0305	0.94308	35.868	5	1	Median	NaN	NaN	NaN	0	0	Median	0.60378	0.75135	NaN	1	0	Median	1.0305	0.94308	NaN	1	0	Median	1.2729	1.3154	46.824	3	1	Median	422380000	199510000	222870000	0	0	0	109340000	58699000	50638000	70101000	32655000	37446000	242940000	108150000	134790000	59095	2517	55684	360082;360083;360084;360085;360086;360087	486162;486163;486164;486165;486166;486167;486168;486169;486170	486170			9	
YKETDLLILFK	2	Unmodified	1381.7857	0.7857037	840	P05455	SSB	Lupus La protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	1	2	86.86	86.293	3	0.0030153	75966	160511_QHF_FH_JSI11i_2	58.676	54.913			0.92076	0.90694	20.931	3	3	Plateau	NaN	NaN	NaN	0	0	Median	0.56126	0.66913	NaN	1	1	Median	0.92076	0.90694	NaN	1	1	Median	0.8774	0.99942	NaN	1	1	Median	33154000	16413000	16741000	0	0	0	7103300	4468500	2634800	12432000	6989600	5442400	13619000	4955100	8663500	59096	840	55685	360088;360089;360090;360091	486171;486172;486173;486174;486175;486176	486173			6	
YKFEVYEK	2	Unmodified	1104.5492	0.54916182	763	P00374	DHFR	Dihydrofolate reductase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.8	0.4		1	4							1		2	2	35.602	35.342	2;3	0.0010239	29938	160511_QHF_FH_JSI12i_3	72.325	72.325			1.96	1.8241	45.858	5	1	Median	2.2092	1.8763	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.6015	2.4541	41.958	2	1	Median	1.0801	1.1125	16.219	2	0	Median	1201200000	483610000	717600000	60720000	18987000	41734000	0	0	0	527140000	132480000	394660000	613350000	332150000	281200000	59097	763	55686	360092;360093;360094;360095;360096	486177;486178;486179;486180	486179			4	
YKGDLAPLWK	2	Unmodified	1189.6495	0.64954457	3904	Q92900	UPF1	Regulator of nonsense transcripts 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			5							1	2		2	54.437	53.408	2;3	0.0011913	45419	160511_QHF_FH_JSI12i_3	50.284	44.098			0.53213	0.59537	56.165	5	1	Linear	3.2845	2.7232	NaN	1	1	Median	1.2023	1.3975	5.2812	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71343	0.71992	14.476	2	0	Median	388480000	214190000	174290000	17338000	5616800	11721000	55307000	31807000	23500000	0	0	0	315830000	176760000	139070000	59098	3904	55687	360097;360098;360099;360100;360101	486181;486182;486183;486184;486185;486186	486185			6	
YKLDEDEDEDDADLSK	2	Unmodified	1898.7905	0.7905269	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	8									2	2	2	2	36.793	36.184	2;3	5.6381E-65	32643	160511_QHF_FH_JSI12i_1	236.43	216.59			0.95316	0.9616	25.606	8	3	Median	1.4231	1.2144	33.652	2	2	Median	0.9891	1.1605	6.34	2	0	Median	0.79373	0.76803	28.07	2	1	Median	0.93022	0.95555	1.5311	2	0	Median	2038500000	963740000	1074700000	60187000	24472000	35716000	674810000	360450000	314360000	612990000	278150000	334850000	690490000	300670000	389810000	59099	657	55688	360102;360103;360104;360105;360106;360107;360108;360109	486187;486188;486189;486190;486191;486192;486193;486194;486195;486196;486197;486198;486199;486200	486194			14	
YKLDIAQLEENLK	2	Unmodified	1575.8508	0.85082315	501	O75330	HMMR	Hyaluronan mediated motility receptor	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	79.913	79.672	3	0.0027366	69202	160511_QHF_FH_JSI12i_3	50.088	30.249			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59100	501	55689	360110;360111	486201;486202	486202			2	
YKLPIPFPEGK	2	Unmodified	1287.7227	0.72270951	3379	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	yes	yes	0	0	0	1	By MS/MS	By matching		By MS/MS	3	0			3							1	1		1	72.177	71.103	3	0.0026466	61521	160511_QHF_FH_JSI12i_3	52.391	43.501			1.0983	1.1293	30.414	3	1	Plateau	0.75819	0.62215	NaN	1	1	Median	0.83251	0.93057	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1192	1.1293	NaN	1	0	Median	97929000	54028000	43901000	20681000	10617000	10064000	21205000	13100000	8105200	0	0	0	56043000	30312000	25732000	59101	3379	55690	360112;360113;360114	486203;486204	486204			2	
YKLPVHTEISWK	2	Unmodified	1499.8136	0.81364979	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	3	1	2	56.457	55.388	3;4	0.015366	46550	160511_QHF_FH_JSI10i_3	41.052	26.491			1.0581	1.107	50.636	6	4	Median	1.3759	1.1489	NaN	1	0	Median	0.62423	0.71161	28.707	3	2	Median	2.7031	2.5825	NaN	1	1	Median	1.2332	1.2583	NaN	1	1	Median	151970000	74554000	77414000	19408000	9760800	9647100	45428000	29880000	15549000	29804000	9886400	19917000	57328000	25027000	32301000	59102	3736	55691	360115;360116;360117;360118;360119;360120;360121	486205;486206;486207;486208;486209;486210	486206			6	
YKMGGDIANR	1	Acetyl (K)	1165.555	0.55499226	5475	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		39.489	29.716	2	0.034871	18118	160513_QHF_FH_JSI11Kac_4	54.416	36.381			0.24008	0.23742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24008	0.23742	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	5322200	4190100	1132000	0	0	0	0	0	0	5322200	4190100	1132000	0	0	0	59103	5475	55692	360122	486211	486211			1	
YKPAVNQIECHPYLTQEK	2	Unmodified	2217.0888	0.088838367	1067	P15121	AKR1B1	Aldose reductase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							2	2	3		44.514	43.612	3;4	3.8187E-11	38107	160511_QHF_FH_JSI11i_3	134.37	120.95			0.81882	0.82221	33.917	7	2	Median	1.1527	0.9422	19.264	2	0	Median	0.73884	0.87869	11.913	2	0	Median	0.81392	0.77574	46.631	3	2	Median	NaN	NaN	NaN	0	0	Median	1029400000	563610000	465740000	176960000	79718000	97240000	309170000	158110000	151060000	543230000	325780000	217440000	0	0	0	59104	1067	55693	360123;360124;360125;360126;360127;360128;360129	486212;486213;486214;486215;486216;486217;486218;486219;486220;486221	486213			10	
YKPESEELTAER	1	Unmodified	1450.694	0.69398816	867	P07237	P4HB	Protein disulfide-isomerase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.39	5	8	6				2	7	3	5	8	8	10	26.682	22.651	2;3	5.9897E-23	19592	160511_QHF_FH_JSI9i_2	158.58	145.18			0.93826	0.95626	24.922	30	2	Median	1.0771	0.90376	13.041	5	0	Median	0.85722	1.0247	34.376	8	1	Median	0.9703	0.98087	14.707	7	0	Median	0.87766	0.96902	29.045	10	1	Median	17342000000	9229600000	8112800000	1600100000	685300000	914760000	3283200000	1955700000	1327600000	7401200000	3908600000	3492600000	5057900000	2680000000	2377900000	59105	867	55694	360130;360131;360132;360133;360134;360135;360136;360137;360138;360139;360140;360141;360142;360143;360144;360145;360146;360147;360148;360149;360150;360151;360152;360153;360154;360155;360156;360157;360158;360159;360160	486222;486223;486224;486225;486226;486227;486228;486229;486230;486231;486232;486233;486234;486235;486236;486237;486238;486239;486240;486241;486242;486243;486244;486245;486246;486247;486248;486249;486250;486251;486252;486253;486254;486255;486256;486257;486258;486259;486260;486261;486262;486263;486264;486265;486266;486267;486268;486269;486270;486271;486272;486273;486274;486275;486276;486277;486278	486250			57	
YKPGVLLGFNMK	2	Unmodified	1365.7479	0.74787841	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	7.33	6.13			2						1		1	1	1	68.13	65.544	3	0.00085485	58488	160511_QHF_FH_JSI11i_3	58.172	49.351			0.95552	0.94545	29.968	3	0	Median	NaN	NaN	NaN	0	0	Median	0.49364	0.56809	NaN	1	0	Median	1.0291	0.96341	NaN	1	0	Median	0.95552	0.94545	NaN	1	0	Median	291250000	161710000	129530000	0	0	0	60312000	34640000	25672000	104870000	53028000	51843000	126060000	74043000	52019000	59106	4679	55695	360161;360162;360163	486279;486280;486281	486279			3	
YKPLDLRPK	2	Unmodified	1128.6655	0.66552898	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	0	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.9	5.96			14						6	8	5	3	4	29.364	26.005	2;3;4	3.427E-05	21949	160511_QHF_FH_JSI11i_3	103.55	96.658			0.77636	0.84825	61.21	19	3	Median	0.995	0.84825	94.224	7	2	Median	0.75984	0.88914	17.011	5	0	Median	1.2199	1.1511	47.664	3	1	Plateau	0.78642	0.81069	11.187	4	0	Median	14536000000	7633800000	6902000000	5634000000	3058000000	2576000000	3994100000	2091400000	1902700000	3889100000	1849500000	2039600000	1018500000	634840000	383660000	59107	1546	55696	360164;360165;360166;360167;360168;360169;360170;360171;360172;360173;360174;360175;360176;360177;360178;360179;360180;360181;360182;360183	486282;486283;486284;486285;486286;486287;486288;486289;486290;486291;486292;486293;486294;486295;486296;486297;486298;486299;486300;486301;486302;486303;486304;486305;486306;486307;486308;486309;486310;486311;486312;486313;486314;486315;486316	486287			34	
YKPLDLRPK	2	Acetyl (K)	1170.6761	0.67609367	1546	P42766	RPL35	60S ribosomal protein L35	yes	yes	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	51.627	41.889	3	0.019719	22706	160513_QHF_FH_JSI11Kac_6	49.5	40.546			0.33267	0.34456	38.761	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.26444	0.26196	NaN	1	0	Median	0.41849	0.45321	NaN	1	0	Median	42729000	32633000	10095000	0	0	0	0	0	0	33996000	26777000	7218600	8733300	5856400	2876900	59108	1546	55696	360184;360185	486317;486318	486317	1565		2	
YKPLNTTPNATK	2	Unmodified	1346.7194	0.71941505	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			4							1	2	1		17.942	17.114	3	0.0014017	13572	160511_QHF_FH_JSI9i_3	63.76	59.055			1.5539	1.5846	72.982	4	4	Median	2.2032	1.8139	NaN	1	1	Median	0.63575	0.74178	88.24	2	2	Median	1.9965	1.8537	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	334300000	157180000	177120000	118880000	50828000	68052000	115390000	66181000	49211000	100020000	40169000	59855000	0	0	0	59109	4206	55697	360186;360187;360188;360189	486319;486320;486321;486322	486322			4	
YKPLNTTPNATK	2	Acetyl (K)	1388.73	0.72997974	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	1	0	0	1		By MS/MS	By MS/MS		14	0							2				1	1		42.026	32.013	2	0.012772	18372	160513_QHF_FH_JSI10Kac_4	54.608	28.669			0.94761	1.0354	26.882	2	0	Median	NaN	NaN	NaN	0	0	Median	0.71933	0.85618	NaN	1	0	Median	1.2483	1.2522	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8037600	4152700	3884800	0	0	0	4185200	2228200	1957000	3852400	1924600	1927900	0	0	0	59110	4206	55697	360190;360191	486323;486324;486325	486324	3079		3	
YKPLPQISK	2	Unmodified	1072.6281	0.62808085	4991	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			12							3	4	2	3	28.91	27.949	2;3	0.00014657	22868	160511_QHF_FH_JSI9i_3	70.552	57.117			1.0109	0.96069	59.552	10	2	Median	0.8744	0.71104	97.301	3	0	Median	0.91746	1.0474	56.009	4	1	Median	NaN	NaN	NaN	0	0	Median	1.1686	1.1989	38.021	3	1	Median	1299600000	659810000	639840000	307580000	124820000	182760000	387330000	209620000	177710000	0	0	0	604730000	325370000	279370000	59111	4991	55698	360192;360193;360194;360195;360196;360197;360198;360199;360200;360201;360202;360203	486326;486327;486328;486329;486330;486331;486332;486333;486334;486335;486336;486337	486334			12	
YKPNMIK	2	Unmodified	892.48406	0.48405915	4954	Q9NRG1	PRTFDC1	Phosphoribosyltransferase domain-containing protein 1	yes	yes	0	0	0	1	By matching			By MS/MS	3	0			2							1			1	17.495	16.94	3	0.017185	13482	160511_QHF_FH_JSI12i_3	47.067	30.913			1.3148	1.1916	38.43	2	0	Median	1.1252	0.90806	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5363	1.5637	NaN	1	0	Median	544880000	217530000	327350000	131960000	64367000	67597000	0	0	0	0	0	0	412910000	153160000	259760000	59112	4954	55699	360204;360205	486338	486338			1	
YKPTPIPIK	2	Unmodified	1055.6379	0.63791725	2493	Q14126	DSG2	Desmoglein-2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			3							1	1	1		34.463	33.508	3	0.006326	28024	160511_QHF_FH_JSI10i_3	37.696	28.834			1.0774	1.2401	17.781	3	0	Plateau	1.0774	0.87573	NaN	1	0	Median	0.85573	0.97765	NaN	1	0	Median	1.3	1.2401	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1396600000	665040000	731510000	365760000	158930000	206840000	379060000	191340000	187720000	651730000	314780000	336960000	0	0	0	59113	2493	55700	360206;360207;360208	486339;486340;486341;486342;486343	486340			5	
YKPVVLTDDQVDQALWEEQVLQK	2	Unmodified	2743.4069	0.40686127	4395	Q9BSF4	C19orf52	Uncharacterized protein C19orf52	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	89.9	89.856	3	3.8714E-09	80224	160511_QHF_FH_JSI11i_3	89.511	78.706			0.78403	0.76717	2.411	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79629	0.7542	NaN	1	0	Median	0.77196	0.78036	NaN	1	0	Median	77024000	39977000	37047000	0	0	0	0	0	0	41689000	21030000	20660000	35335000	18947000	16387000	59114	4395	55701	360209;360210	486344;486345;486346;486347;486348;486349	486346			6	
YKPYEEALLQAEAPR	1	Unmodified	1776.9046	0.90464964	2604	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	yes	yes	0	0	0	1	By matching	By MS/MS	By matching		2	0		3								1	1	1		56.615	55.811	3	0.0026227	49209	160511_QHF_FH_JSI10i_2	51.888	39.742			0.72002	0.86323	22.668	3	0	Median	0.69619	0.5954	NaN	1	0	Median	0.72002	0.86323	NaN	1	0	Median	0.87753	0.89792	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	330380000	187300000	143080000	88244000	48790000	39454000	151920000	89745000	62171000	90220000	48766000	41454000	0	0	0	59115	2604	55702	360211;360212;360213	486350	486350			1	
YKQDVYLLPK	2	Unmodified	1265.702	0.70197407	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	no	no	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4								1	1	3	44.067	43.734	2;3	0.00014263	38640	160511_QHF_FH_JSI10i_2	69.01	65.753			0.9016	0.92515	99.713	5	4	Median	NaN	NaN	NaN	0	0	Median	5.9571	7.4939	NaN	1	0	Median	0.63853	0.61503	NaN	1	1	Median	0.9016	0.92515	20.139	3	3	Median	715000000	358320000	356680000	0	0	0	40743000	5624100	35119000	239040000	136560000	102480000	435220000	216140000	219080000	59116	389	55703	360214;360215;360216;360217;360218	486351;486352;486353;486354;486355	486352			5	
YKQIFLGGVDK	2	Unmodified	1266.6972	0.69722304	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	0	0	0	1	By MS/MS	By MS/MS			3	0			4							2	2			45.213	43.635	3	0.018787	35655	160511_QHF_FH_JSI9i_3	42.095	25.958			0.5833	0.6658	67.467	4	4	Median	0.59142	0.48792	102.2	2	2	Median	0.5833	0.6658	47.379	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115450000	72879000	42573000	56925000	36133000	20792000	58527000	36746000	21781000	0	0	0	0	0	0	59117	1014;826	55704	360219;360220;360221;360222	486356;486357;486358;486359	486358			4	
YKQIFLGGVDK	2	Acetyl (K)	1308.7078	0.70778773	826;1014	P12236;P05141	SLC25A6;SLC25A5	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	no	no	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.2	0.687							2	6	4	2	4	2	4	72.104	62.092	2	1.64E-19	33173	160513_QHF_FH_JSI11Kac_5	162.36	128.4			0.76523	0.82792	56.629	10	0	Median	0.91519	0.77234	NaN	1	0	Median	0.86823	1.0324	51.812	4	0	Linear	0.67381	0.66509	NaN	1	0	Median	0.769	0.83334	77.633	4	0	Median	1142500000	674870000	467620000	97818000	55892000	41925000	292510000	166360000	126150000	341070000	237820000	103250000	411090000	214790000	196300000	59118	1014;826	55704	360223;360224;360225;360226;360227;360228;360229;360230;360231;360232;360233;360234	486360;486361;486362;486363;486364;486365;486366;486367;486368;486369;486370;486371;486372;486373;486374;486375;486376;486377;486378	486369	477;481;817;819		19	
YKQIFLGGVDKR	2	Acetyl (K)	1464.8089	0.80889876	826	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	yes	yes	1	0	0	2		By MS/MS			16	0									1		1			60.324	51.925	3	0.0019139	28594	160513_QHF_FH_JSI10Kac_6	73.877	49.157			0.29509	0.3518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.29509	0.3518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	33108000	26403000	6705400	0	0	0	33108000	26403000	6705400	0	0	0	0	0	0	59119	826	55705	360235	486379	486379	477;481		1	
YKSQDPR	1	Acetyl (K)	934.45084	0.45084476	1322	P29401	TKT	Transketolase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		8.9025	1.2914	2	0.029142	3467	160513_QHF_FH_JSI11Kac_4	77.058	35.405			0.089345	0.086957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.089345	0.086957	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10475000	9474600	1000800	0	0	0	0	0	0	10475000	9474600	1000800	0	0	0	59120	1322	55706	360236	486380	486380			1	
YKSYSPYDMLESIRK	2	Acetyl (K)	1920.9291	0.92914983	870	P07355;A6NMY6	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	yes	no	1	0	0	2			By MS/MS	By MS/MS	16	0									2			1	1	80.796	71.418	3	9.0666E-07	39171	160513_QHF_FH_JSI11Kac_6	112.57	92.184			0.44403	0.43945	14.448	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4246	0.39677	NaN	1	0	Median	0.46435	0.48672	NaN	1	0	Median	224940000	163360000	61582000	0	0	0	0	0	0	187530000	139660000	47871000	37415000	23704000	13711000	59121	870	55707	360237;360238	486381;486382	486381	579		2	
YKVEYPIMYSTDPENGHIFNCIQR	1	Unmodified	2973.3789	0.37894873	214	O14880	MGST3	Microsomal glutathione S-transferase 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			7							1	4	2		78.199	77.213	3;4	1.5416E-12	68465	160511_QHF_FH_JSI11i_3	99.603	97.129			0.85608	0.98679	17.553	7	1	Median	1.2411	1.0324	NaN	1	0	Median	0.87507	1.0112	10.46	4	1	Median	0.78436	0.72027	3.683	2	0	Median	NaN	NaN	NaN	0	0	Median	357670000	193050000	164620000	13127000	6304300	6823200	134430000	69081000	65354000	210110000	117660000	92445000	0	0	0	59122	214	55708	360239;360240;360241;360242;360243;360244;360245	486383;486384;486385;486386;486387;486388;486389;486390;486391	486387			9	
YKVPDGKPENEFAFNAEFK	3	Unmodified	2229.0742	0.074234161	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	2		By MS/MS	By MS/MS	By MS/MS	3	0			7								3	2	2	62.506	61.778	3;4	3.8279E-10	53061	160511_QHF_FH_JSI12i_3	128.01	119.65			1.076	1.0756	28.053	7	1	Median	NaN	NaN	NaN	0	0	Median	1.076	1.2033	39.225	3	0	Plateau	1.211	1.1464	11.313	2	1	Median	1.0889	1.1233	25.894	2	0	Median	1647100000	732400000	914660000	0	0	0	230350000	125370000	104980000	856920000	372870000	484050000	559780000	234150000	325630000	59123	2641	55709	360246;360247;360248;360249;360250;360251;360252	486392;486393;486394;486395;486396;486397;486398;486399;486400;486401	486401			10	
YKWCEYGLTFTEK	2	Acetyl (K)	1765.8022	0.8021584	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	80.9	73.413	2	7.7454E-21	41006	160513_QHF_FH_JSI10Kac_6	191.26	167.51			3.252	3.6206	105.84	2	1	Median	NaN	NaN	NaN	0	0	Median	6.4437	7.6528	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6412	1.7129	NaN	1	0	Median	116330000	37130000	79196000	0	0	0	51829000	25492000	26337000	29550000	0	29550000	34947000	11639000	23309000	59124	1570	55710	360253;360254;360255;360256	486402;486403;486404;486405	486405	1585		4	
YKYGYEIPVDMLCK	2	Acetyl (K)	1819.8525	0.85247941	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		86.215	75.707	2	0.02578	39821	160513_QHF_FH_JSI11Kac_5	47.288	38.334			0.70477	0.68149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70477	0.68149	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2106600	1473400	633230	0	0	0	0	0	0	2106600	1473400	633230	0	0	0	59125	1922	55711	360257	486406	486406	1928		1	
YKYGYEIPVDMLCK	2	Acetyl (K);Oxidation (M)	1835.8474	0.84739403	1922	P60900	PSMA6	Proteasome subunit alpha type-6	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		79.07	68.483	2	0.039663	36373	160513_QHF_FH_JSI11Kac_5	49.5	36.073			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1232300	1232300	0	0	0	0	0	0	0	1232300	1232300	0	0	0	0	59126	1922	55711	360258	486407	486407	1928		1	
YLAAGSSNAVK	1	Unmodified	1079.5611	0.56112349	2889	Q5HYI8	RABL3	Rab-like protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.75	5.36	1	2					1			1	2	1		18.309	15.942	2	0.0014697	13393	160511_QHF_FH_JSI9i_2	76.1	50.161			0.63815	0.58056	212.6	4	4	Median	0.44183	0.36488	NaN	1	1	Median	0.88518	1.0526	357.4	2	2	Median	0.9217	0.92375	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1326200000	71328000	1254800000	26179000	14348000	11831000	1296500000	55411000	1241100000	3492700	1568600	1924100	0	0	0	59127	2889	55712	360259;360260;360261;360262	486408;486409;486410;486411	486410			4	
YLAEDSNMSVPSEPSSPQSSTR	0	Unmodified	2368.0489	0.048883626	2432	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	2	2	2	47.974	47.38	2	1.3389E-33	43005	160511_QHF_FH_JSI12i_1	190.87	185.98			1.1526	1.0527	29.311	6	5	Median	1.2973	1.0506	NaN	1	0	Median	0.91266	1.0601	45.73	2	2	Median	1.1737	1.1234	46.404	2	2	Median	1.0296	1.0548	NaN	1	1	Median	220890000	112580000	108310000	50215000	25097000	25118000	68396000	38505000	29891000	68608000	30611000	37996000	33675000	18365000	15310000	59128	2432	55713	360263;360264;360265;360266;360267;360268;360269	486412;486413;486414;486415;486416;486417;486418;486419;486420	486416			9	
YLAEFATGNDR	0	Unmodified	1255.5833	0.5833155	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.88	6.29		5						3		2	3	2	1	43.284	38.793	2	1.4739E-07	34207	160511_QHF_FH_JSI9i_2	123.86	108.71			0.83736	0.91935	34.948	8	3	Median	0.99079	0.84596	36.487	2	0	Median	0.85471	1.0061	53.689	3	3	Median	0.8141	0.81676	3.9767	2	0	Median	1.1308	1.2675	NaN	1	0	Median	799870000	441110000	358760000	133060000	70774000	62287000	241900000	133450000	108450000	286110000	163220000	122900000	138790000	73667000	65128000	59129	1990	55714	360270;360271;360272;360273;360274;360275;360276;360277	486421;486422;486423;486424;486425;486426;486427;486428;486429;486430;486431;486432	486425			12	
YLAEFATGNDRK	1	Unmodified	1383.6783	0.67827852	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.96	5.75		14	21					3	9	10	10	15	12	32.996	29.802	2;3	2.5093E-31	25933	160511_QHF_FH_JSI9i_2	204.5	178.11			1.0922	0.99504	102.41	42	32	Median	1.2228	0.9992	35.185	9	4	Median	0.51335	0.60874	118.62	10	9	Median	1.0437	1.0417	125.07	12	10	Median	2.0779	2.2941	108.99	11	9	Median	36859000000	18734000000	18125000000	2885100000	1489400000	1395700000	6144600000	2922500000	3222000000	17662000000	9873700000	7788400000	10167000000	4448300000	5718500000	59130	1990	55715	360278;360279;360280;360281;360282;360283;360284;360285;360286;360287;360288;360289;360290;360291;360292;360293;360294;360295;360296;360297;360298;360299;360300;360301;360302;360303;360304;360305;360306;360307;360308;360309;360310;360311;360312;360313;360314;360315;360316;360317;360318;360319;360320;360321;360322;360323;360324	486433;486434;486435;486436;486437;486438;486439;486440;486441;486442;486443;486444;486445;486446;486447;486448;486449;486450;486451;486452;486453;486454;486455;486456;486457;486458;486459;486460;486461;486462;486463;486464;486465;486466;486467;486468;486469;486470;486471;486472;486473;486474;486475;486476;486477;486478;486479;486480;486481;486482;486483;486484;486485;486486;486487;486488;486489;486490;486491;486492;486493;486494;486495;486496;486497;486498;486499;486500;486501;486502;486503;486504;486505;486506;486507;486508;486509;486510;486511	486470			79	
YLAEFATGNDRKEAAENSLVAYK	2	Acetyl (K)	2601.2711	0.27109607	1990	P62258	YWHAE	14-3-3 protein epsilon	yes	yes	1	0	0	2	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	75.434	66.964	3	4.7849E-37	37206	160513_QHF_FH_JSI10Kac_6	163.18	144.14			0.71024	0.67078	49.936	4	0	Median	0.86836	0.73792	NaN	1	0	Median	1.2003	1.43	NaN	1	0	Median	0.46347	0.43691	NaN	1	0	Median	0.58092	0.60974	NaN	1	0	Median	291690000	179470000	112220000	31068000	17602000	13465000	76927000	41087000	35841000	135960000	89731000	46232000	47735000	31050000	16685000	59131	1990	55716	360325;360326;360327;360328	486512;486513;486514;486515;486516;486517;486518	486518	2012		7	
YLAEKYEWDVAEARK	2	Acetyl (K)	1911.9367	0.93667805	1033	P13639	EEF2	Elongation factor 2	yes	yes	1	0	0	2		By MS/MS	By MS/MS		16	0									2		1	1		69.475	60.862	3	1.3581E-10	33002	160513_QHF_FH_JSI11Kac_6	125.89	108.81			0.89352	0.95261	125.64	2	1	Median	NaN	NaN	NaN	0	0	Median	1.936	2.316	NaN	1	1	Median	0.41239	0.39183	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	153200000	95528000	57676000	0	0	0	22465000	2391400	20074000	130740000	93137000	37602000	0	0	0	59132	1033	55717	360329;360330	486519;486520	486519	860		2	
YLAEKYLQK	2	Acetyl (K)	1196.6441	0.64412484	5394	Q9ULC3	RAB23	Ras-related protein Rab-23	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		58.007	47.141	2	0.025385	25848	160513_QHF_FH_JSI11Kac_5	60.91	45.248			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3510000	3510000	0	0	0	0	0	0	0	3510000	3510000	0	0	0	0	59133	5394	55718	360331	486521	486521	3384		1	
YLAEVAAGDDK	1	Unmodified	1150.5506	0.55061839	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.58	5.08	8	4	2		1	3	1			6	5	4	4	27.925	24.275	2	9.7629E-20	5989	160513_QHF_FH_JSI9Kac_3	163.77	108.05			0.57596	0.57007	120.96	17	15	Median	1.1257	0.92374	95.082	5	4	Median	2.0962	2.6168	106.6	5	5	Median	0.57596	0.57007	228.12	3	2	Median	0.48596	0.52562	89.087	4	4	Median	17817000000	8913700000	8903700000	4129200000	2331100000	1798100000	5399000000	2894200000	2504800000	3862200000	1331700000	2530400000	4427100000	2356700000	2070400000	59134	2051	55719	360332;360333;360334;360335;360336;360337;360338;360339;360340;360341;360342;360343;360344;360345;360346;360347;360348;360349;360350	486522;486523;486524;486525;486526;486527;486528;486529;486530;486531;486532;486533;486534;486535;486536;486537;486538;486539;486540;486541;486542;486543	486532			22	
YLAEVAAGDDKK	2	Unmodified	1278.6456	0.6455814	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.15	4.72	13	16	15				5	4		11	15	14	13	22.846	20.731	2;3	4.7136E-17	17338	160511_QHF_FH_JSI11i_2	215.87	178.15			1.5598	1.6775	149.73	51	51	Median	1.4208	1.1676	160.72	11	11	Median	1.4817	1.7793	126.73	15	15	Median	1.1152	1.0372	180.63	13	13	Median	1.8612	1.9955	140.83	12	12	Median	27048000000	13197000000	13852000000	4258300000	2212100000	2046200000	7619800000	3945700000	3674100000	7959800000	3862200000	4097600000	7210200000	3176600000	4033600000	59135	2051	55720	360351;360352;360353;360354;360355;360356;360357;360358;360359;360360;360361;360362;360363;360364;360365;360366;360367;360368;360369;360370;360371;360372;360373;360374;360375;360376;360377;360378;360379;360380;360381;360382;360383;360384;360385;360386;360387;360388;360389;360390;360391;360392;360393;360394;360395;360396;360397;360398;360399;360400;360401;360402;360403	486544;486545;486546;486547;486548;486549;486550;486551;486552;486553;486554;486555;486556;486557;486558;486559;486560;486561;486562;486563;486564;486565;486566;486567;486568;486569;486570;486571;486572;486573;486574;486575;486576;486577;486578;486579;486580;486581;486582;486583;486584;486585;486586;486587;486588;486589;486590;486591;486592;486593;486594;486595;486596;486597;486598;486599;486600;486601;486602;486603;486604	486590			61	
YLAEVAAGDDKK	2	Acetyl (K)	1320.6561	0.65614609	2051	P63104	YWHAZ	14-3-3 protein zeta/delta	yes	yes	1	0	0	1		By MS/MS	By MS/MS		13	0						4					2	2		43.262	34.128	2;3	0.00044805	18486	160513_QHF_FH_JSI10Kac_3	91.855	69.213			3.9431	4.0977	42.168	2	2	Median	NaN	NaN	NaN	0	0	Median	4.8609	5.5212	NaN	1	1	Median	3.1986	3.0412	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	8555700	4833500	3722200	0	0	0	4010900	2204200	1806800	4544800	2629300	1915400	0	0	0	59136	2051	55720	360404;360405;360406;360407	486605;486606;486607;486608	486607	2118		4	
YLAEVACGDDRK	1	Unmodified	1395.6453	0.64526383	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.21	0.41		11	3							3	2	4	5	21.435	20.812	2;3	2.484E-05	17762	160511_QHF_FH_JSI9i_2	89.382	79.194			0.84132	0.82267	83.317	12	11	Median	1.4924	1.2916	71.951	2	1	Median	0.77691	0.95883	40.162	2	2	Median	0.44532	0.42684	56.429	4	4	Median	1.4151	1.5044	101.27	4	4	Median	1138900000	579450000	559480000	111570000	55140000	56427000	245570000	139340000	106230000	400290000	247880000	152410000	381520000	137100000	244420000	59137	1288	55721	360408;360409;360410;360411;360412;360413;360414;360415;360416;360417;360418;360419;360420;360421	486609;486610;486611;486612;486613;486614;486615;486616;486617;486618;486619;486620;486621;486622;486623;486624	486613			16	
YLAEVASGEK	1	Unmodified	1065.5342	0.53424004	2224	Q04917	YWHAH	14-3-3 protein eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.94	5.64	8	4	1				5			2	5	5	6	26.548	23.497	2	9.8476E-14	14557	160513_QHF_FH_JSI11Kac_4	149.72	110.93			0.50385	0.47875	98.577	18	16	Median	0.7374	0.6091	34.01	2	2	Median	0.53538	0.64273	78.709	5	5	Median	0.27899	0.27555	111.33	5	4	Median	0.46076	0.50551	123.17	6	5	Median	3452000000	2083400000	1368600000	447180000	246130000	201050000	874720000	592630000	282090000	1010700000	567600000	443150000	1119300000	677050000	442270000	59138	2224	55722	360422;360423;360424;360425;360426;360427;360428;360429;360430;360431;360432;360433;360434;360435;360436;360437;360438;360439	486625;486626;486627;486628;486629;486630;486631;486632;486633;486634;486635;486636;486637;486638;486639;486640;486641;486642;486643	486637			19	
YLAEVATGDDK	1	Unmodified	1180.5612	0.56118307	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.87	8	3				5	2			3	6	4	5	31.556	27.487	2	2.9301E-07	16062	160513_QHF_FH_JSI11Kac_3	109.66	86.344			0.53334	0.50278	105.3	17	17	Median	1.5347	1.2569	139.94	2	2	Median	0.39765	0.4799	119.38	6	6	Median	1.1053	1.0891	123.53	4	4	Median	0.53334	0.58642	94.607	5	5	Median	6226000000	2867700000	3358300000	1392000000	548760000	843250000	1487300000	676610000	810660000	1712500000	836250000	876270000	1634200000	806060000	828120000	59139	1385	55723	360440;360441;360442;360443;360444;360445;360446;360447;360448;360449;360450;360451;360452;360453;360454;360455;360456;360457	486644;486645;486646;486647;486648;486649;486650;486651;486652;486653;486654;486655;486656;486657;486658;486659;486660;486661;486662	486651			19	
YLAEVATGDDKK	2	Unmodified	1308.6561	0.65614609	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.64	4.14	2	15	2				3			5	6	5	6	22.433	20.848	2;3	1.548E-06	17299	160511_QHF_FH_JSI11i_2	123.95	102.65			1.9854	2.0945	134.39	18	17	Median	0.92912	0.79519	90.076	4	4	Median	3.3223	3.9989	49.219	4	4	Median	2.0372	2.035	168.17	5	4	Median	1.9349	2.0816	157.82	5	5	Median	1783100000	889720000	893340000	418860000	207460000	211410000	319700000	124230000	195470000	563480000	325220000	238270000	481020000	232820000	248190000	59140	1385	55724	360458;360459;360460;360461;360462;360463;360464;360465;360466;360467;360468;360469;360470;360471;360472;360473;360474;360475;360476;360477;360478;360479	486663;486664;486665;486666;486667;486668;486669;486670;486671;486672;486673;486674;486675;486676;486677;486678;486679;486680;486681;486682;486683;486684;486685;486686	486678			24	
YLAEVATGDDKK	2	Acetyl (K)	1350.6667	0.66671078	1385	P31947	SFN	14-3-3 protein sigma	yes	yes	1	0	0	1		By MS/MS			13	0						1					1			43.057	33.999	2	0.020366	18490	160513_QHF_FH_JSI10Kac_3	60.434	42.122			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	917400	917400	0	0	0	0	917400	917400	0	0	0	0	0	0	0	59141	1385	55724	360480	486687	486687	1330		1	
YLAEVATGEK	1	Unmodified	1079.5499	0.5498901	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.57	4.18	6	8	4			1	2			5	7	6	3	28.658	26.619	2	1.0649E-06	23414	160511_QHF_FH_JSI10i_1	126.07	94.994			0.99505	0.82508	119.97	21	19	Median	0.99505	0.82508	85.398	5	4	Median	1.3809	1.6385	91.45	7	7	Median	1.0405	1.0394	178.16	6	5	Median	0.53055	0.56757	145.18	3	3	Median	12887000000	6133800000	6752800000	2631200000	1235800000	1395400000	4611600000	2426000000	2185600000	3191300000	1435300000	1756000000	2452500000	1036700000	1415800000	59142	1976	55725	360481;360482;360483;360484;360485;360486;360487;360488;360489;360490;360491;360492;360493;360494;360495;360496;360497;360498;360499;360500;360501	486688;486689;486690;486691;486692;486693;486694;486695;486696;486697;486698;486699;486700;486701;486702;486703;486704;486705;486706;486707;486708;486709	486695			22	
YLAEVATGEKR	1	Acetyl (K)	1277.6616	0.66156582	1976	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			43.081	33.039	2	0.032017	18939	160513_QHF_FH_JSI10Kac_4	57.174	34.937			1.3115	1.5324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3115	1.5324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2199800	1019700	1180100	0	0	0	2199800	1019700	1180100	0	0	0	0	0	0	59143	1976	55726	360502	486710	486710			1	
YLAFLRK	1	Unmodified	909.54362	0.54362294	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	3	1	1	48.831	42.802	2;3	0.0031	35902	160511_QHF_FH_JSI10i_3	67.035	27.492			0.20765	0.24079	151.45	4	3	Median	NaN	NaN	NaN	0	0	Median	0.38017	0.45632	138.88	3	3	Median	NaN	NaN	NaN	0	0	Median	0.062961	0.065894	NaN	1	0	Median	442250000	271270000	170980000	4083200	4083200	0	419540000	249760000	169780000	0	0	0	18625000	17419000	1205900	59144	1497	55727	360503;360504;360505;360506;360507;360508	486711;486712;486713;486714;486715;486716;486717	486712			7	
YLAIAPPIIK	1	Unmodified	1097.6849	0.68486744	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.93	5.93	2	4	4					3	1	3	4	4	3	77.834	74.895	2	2.4968E-07	67654	160511_QHF_FH_JSI10i_2	114.6	89.971			1.0174	0.99473	14.369	13	0	Median	1.1529	0.99473	8.3827	3	0	Plateau	0.77052	0.9275	15.859	4	0	Median	0.95391	0.98845	10.422	3	0	Plateau	1.0065	1.1506	11.719	3	0	Plateau	1440900000	705140000	735780000	236170000	106110000	130070000	349170000	169990000	179180000	531960000	274110000	257850000	323610000	154930000	168680000	59145	2734	55728	360509;360510;360511;360512;360513;360514;360515;360516;360517;360518;360519;360520;360521;360522	486718;486719;486720;486721;486722;486723;486724;486725;486726;486727;486728;486729;486730;486731;486732;486733;486734;486735;486736;486737;486738;486739;486740	486738			21	
YLALESMCTLASSEFSHEAVK	1	Unmodified	2372.1028	0.10283345	726;635	O95782;O94973	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	no	no	0	0	0	0				By MS/MS	2	0		2											2	90.468	89.597	3	3.1068E-18	77364	160511_QHF_FH_JSI12i_2	141.31	118.44			0.97575	1.0853	23.499	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97575	1.0853	23.499	2	2	Median	92424000	45793000	46630000	0	0	0	0	0	0	0	0	0	92424000	45793000	46630000	59146	726;635	55729	360523;360524	486741;486742	486742			2	
YLANIEQQHGNSGR	0	Unmodified	1585.7597	0.75971673	5382	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.47	0.499		9	8							2	4	7	4	18.643	18.253	2;3	3.7275E-07	15776	160511_QHF_FH_JSI10i_2	106.3	93.94			1.356	1.4077	49.789	13	11	Median	1.1651	1.017	54.561	2	1	Median	0.99477	1.2147	47.428	4	3	Median	1.4465	1.4041	49.292	4	4	Median	1.0797	1.1003	72.315	3	3	Plateau	1195900000	484260000	711670000	117890000	50829000	67059000	207290000	96432000	110860000	524880000	161850000	363040000	345870000	175160000	170710000	59147	5382	55730	360525;360526;360527;360528;360529;360530;360531;360532;360533;360534;360535;360536;360537;360538;360539;360540;360541	486743;486744;486745;486746;486747;486748;486749;486750;486751;486752;486753;486754;486755;486756;486757;486758;486759;486760;486761;486762;486763	486757			21	
YLAPSGPSGTLK	1	Unmodified	1189.6343	0.63428844	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.33	6.4	4	4	4			2	3	4	3	5	6	7	6	38.517	33.277	2	2.0016E-07	28510	160511_QHF_FH_JSI12i_2	132.78	124.25			0.98889	1.053	18.617	24	1	Median	1.3161	1.0652	11.944	5	0	Median	0.86889	1.014	12.031	6	0	Median	0.99641	0.99089	30.897	7	1	Median	0.94939	1.042	8.1452	6	0	Median	10007000000	4815400000	5191500000	2061000000	803270000	1257700000	2526100000	1329800000	1196300000	3371000000	1630700000	1740300000	2048800000	1051600000	997270000	59148	2751	55731	360542;360543;360544;360545;360546;360547;360548;360549;360550;360551;360552;360553;360554;360555;360556;360557;360558;360559;360560;360561;360562;360563;360564;360565	486764;486765;486766;486767;486768;486769;486770;486771;486772;486773;486774;486775;486776;486777;486778;486779;486780;486781;486782;486783;486784;486785;486786;486787;486788;486789;486790;486791;486792;486793;486794;486795;486796;486797;486798;486799;486800;486801;486802;486803;486804;486805;486806;486807;486808;486809;486810;486811;486812;486813;486814;486815;486816;486817	486772			54	
YLAQWYSETNGR	0	Unmodified	1486.6841	0.68409218	2442	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	48.048	47.888	2	0.0004356	40982	160511_QHF_FH_JSI12i_3	87.298	72.032			0.79219	0.78711	43.02	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66887	0.63469	NaN	1	1	Median	1.0937	1.0699	43.405	2	2	Median	98211000	50711000	47499000	0	0	0	0	0	0	37159000	24419000	12741000	61051000	26293000	34759000	59149	2442	55732	360566;360567;360568	486818;486819;486820	486820			3	
YLAQYYFK	1	Unmodified	1094.5437	0.54368251	5350	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	1	2			60.316	51.556	2	0.0043706	28492	160513_QHF_FH_JSI10Kac_6	69.176	34.368			1.0085	1.0405	25.62	2	2	Median	0.99141	0.86813	NaN	1	1	Median	1.0258	1.2472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	55504000	32120000	23384000	28254000	15059000	13194000	27251000	17061000	10190000	0	0	0	0	0	0	59150	5350	55733	360569;360570;360571	486821;486822;486823	486823			3	
YLASGAIDGIINIFDIATGK	1	Unmodified	2051.0939	0.09390697	4605	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.14	0.35		6	1							1	2	2	2	103.36	103.29	2;3	7.2521E-68	91019	160511_QHF_FH_JSI11i_2	234.67	222.04			0.89063	0.9141	21.039	7	0	Median	1.0151	0.9141	NaN	1	0	Median	0.70616	0.86374	6.0081	2	0	Median	0.89109	0.89466	4.9852	2	0	Median	1.155	1.2309	32.029	2	0	Median	389370000	200460000	188910000	46897000	22598000	24299000	71879000	41449000	30430000	187540000	98541000	89002000	83050000	37876000	45175000	59151	4605	55734	360572;360573;360574;360575;360576;360577;360578	486824;486825;486826;486827;486828;486829;486830;486831	486825			8	
YLASGSFDK	1	Unmodified	986.47091	0.4709115	4568;459	Q9BZK7;O60907	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	no	no	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								1		2	2	27.501	26.632	2	0.0045667	22227	160511_QHF_FH_JSI11i_2	66.692	47.961			1.1325	1.2619	66.288	5	5	Median	1.7503	1.4905	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2343	1.2539	91.702	2	2	Median	0.67718	0.75808	72.064	2	2	Median	520640000	267980000	252660000	65441000	31313000	34128000	0	0	0	276550000	137740000	138810000	178650000	98928000	79724000	59152	4568;459	55735	360579;360580;360581;360582;360583	486832;486833;486834;486835;486836	486835			5	
YLASGSGDTTVR	0	Unmodified	1225.5939	0.59388018	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.79	1	3					2			1	1	3	1	20.055	16.845	2	0.00081181	14361	160511_QHF_FH_JSI11i_1	70.056	29.788			0.52257	0.52162	25.314	3	2	Plateau	0.70751	0.60044	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86834	0.85276	NaN	1	0	Median	0.48297	0.52162	NaN	1	1	Median	53837000	33615000	20222000	21817000	12525000	9292100	0	0	0	6282700	3322100	2960600	25737000	17768000	7969400	59153	5054	55736	360584;360585;360586;360587;360588;360589	486837;486838;486839;486840;486841;486842;486843	486837			7	
YLASMRPFAQSFDIYLTQILR	0	Unmodified	2532.3199	0.31990094	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			96.81	91.09	3	3.4815E-16	52866	160513_QHF_FH_JSI10Kac_6	122.16	101.27			0.6913	0.82871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6913	0.82871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	153900000	78857000	75041000	0	0	0	153900000	78857000	75041000	0	0	0	0	0	0	59154	3063	55737	360590	486844	486844			1	
YLATLNFVHR	0	Unmodified	1232.6666	0.66659162	2268	Q08345	DDR1	Epithelial discoidin domain-containing receptor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			63.513	54.873	3	3.4443E-14	30199	160513_QHF_FH_JSI10Kac_6	154.85	121.47			1.0312	1.0359	35.745	2	0	Median	0.94843	0.80452	NaN	1	0	Median	1.1213	1.3337	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	48010000	25965000	22044000	14590000	7881600	6708000	33420000	18084000	15336000	0	0	0	0	0	0	59155	2268	55738	360591;360592	486845;486846;486847;486848	486847			4	
YLATVVGYLVVSRPFLDLSHPR	0	Unmodified	2501.3795	0.37946473	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									2	1	1			92.058	84.769	4	3.5313E-13	46969	160513_QHF_FH_JSI9Kac_6	105.96	94.336			1.1739	1.1803	56.981	2	0	Median	0.92289	0.7889	NaN	1	0	Median	1.4931	1.766	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	293790000	151730000	142060000	71239000	37121000	34118000	222550000	114610000	107940000	0	0	0	0	0	0	59156	1304	55739	360593;360594	486849;486850;486851	486850			3	
YLAVESPFLK	1	Unmodified	1165.6383	0.63831118	1704	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.919	72.042	2	0.00031035	63045	160511_QHF_FH_JSI11i_2	90.657	79.947			0.68661	0.76712	48.797	4	4	Median	0.41083	0.34892	NaN	1	1	Median	0.5773	0.71922	NaN	1	1	Median	0.8166	0.81822	NaN	1	1	Median	0.95681	1.1013	NaN	1	1	Median	706320000	509660000	196660000	159640000	119350000	40297000	174400000	132940000	41460000	236690000	164160000	72530000	135590000	93215000	42370000	59157	1704	55740	360595;360596;360597;360598	486852;486853;486854;486855	486854			4	
YLCDEQK	1	Unmodified	954.41168	0.41168206	2217	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		9.4979	9.3707	2	0.044146	7046	160511_QHF_FH_JSI11i_1	48.756	36.851			0.5546	0.53898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.5546	0.53898	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	74271000	35903000	38368000	0	0	0	0	0	0	74271000	35903000	38368000	0	0	0	59158	2217	55741	360599	486856	486856			1	
YLDEDTIYHLQPSGR	0	Unmodified	1805.8584	0.85842773	1370	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.41	5.09	2	9	3					2	1	4	4	6	3	59.295	56.669	2;3	9.672E-98	48508	160511_QHF_FH_JSI12i_2	275.95	266.52			1.007	1.0088	10.439	16	0	Median	1.1934	1.0068	5.4766	4	0	Median	0.79456	0.9772	6.7699	3	0	Plateau	1.0591	1.0424	15.372	6	0	Median	0.84636	0.95167	7.4405	3	0	Median	4185000000	1850000000	2334900000	773550000	315550000	458000000	1008200000	529100000	479150000	1468400000	597970000	870380000	934800000	407400000	527400000	59159	1370	55742	360600;360601;360602;360603;360604;360605;360606;360607;360608;360609;360610;360611;360612;360613;360614;360615;360616	486857;486858;486859;486860;486861;486862;486863;486864;486865;486866;486867;486868;486869;486870;486871;486872;486873;486874;486875;486876;486877	486860			19	
YLDELMK	1	Unmodified	910.447	0.44700494	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.6	0.49	2	3								3		1	1	42.979	42.137	2	0.0085196	36680	160511_QHF_FH_JSI9i_2	72.138	25.475			0.088451	0.085474	243.36	4	4	Linear	2.9256	2.4669	264.61	2	2	Median	NaN	NaN	NaN	0	0	Median	0.089744	0.089825	NaN	1	1	Median	6.9133	6.9814	NaN	1	1	Median	727540000	388950000	338590000	353540000	148790000	204750000	0	0	0	243590000	199540000	44048000	130410000	40620000	89793000	59160	1600	55743	360617;360618;360619;360620;360621	486878;486879;486880;486881;486882	486881			5	
YLDESSGGWR	0	Unmodified	1168.5149	0.51490158	92	O00115	DNASE2	Deoxyribonuclease-2-alpha	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	31.921	31.038	2	0.011066	26318	160511_QHF_FH_JSI11i_2	56.729	41.067			0.56208	0.6078	9.8358	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.49459	0.6078	NaN	1	1	Median	0.52799	0.52825	NaN	1	1	Median	0.57224	0.63851	NaN	1	0	Median	124350000	75413000	48937000	0	0	0	34477000	23138000	11339000	53318000	32146000	21172000	36555000	20129000	16426000	59161	92	55744	360622;360623;360624	486883;486884;486885	486884			3	
YLDFVFAVK	1	Unmodified	1100.5906	0.59063271	1028	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10	6.93		3							4	1	2	2	2	86.322	81.317	2	8.9542E-05	43654	160513_QHF_FH_JSI10Kac_6	114.5	73.195			0.64507	0.71307	23.179	7	2	Median	0.64507	0.5628	NaN	1	0	Median	0.58874	0.71149	6.2026	2	1	Median	0.6559	0.64005	15.278	2	1	Median	0.92934	0.98455	11.286	2	0	Median	332180000	172730000	159440000	66202000	33445000	32757000	121360000	74360000	47002000	94329000	40589000	53740000	50283000	24339000	25943000	59162	1028	55745	360625;360626;360627;360628;360629;360630;360631	486886;486887;486888;486889;486890;486891;486892;486893;486894	486894			9	
YLDIHER	0	Unmodified	944.47158	0.4715802	1978	P62072	TIMM10	Mitochondrial import inner membrane translocase subunit Tim10	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		18.146	17.634	2	0.0097796	14386	160511_QHF_FH_JSI11i_2	77.674	14.96			1.1989	1.3279	40.583	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4244	1.7693	NaN	1	1	Median	1.0091	0.99667	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93851000	40167000	53683000	0	0	0	29753000	10649000	19105000	64097000	29519000	34579000	0	0	0	59163	1978	55746	360632;360633	486895;486896	486895			2	
YLDLEEEADTTK	1	Unmodified	1425.6511	0.65112029	5386	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1	0	2									1			1	47.849	46.624	2	0.00070045	42344	160511_QHF_FH_JSI12i_1	70.977	46.888			1.608	1.3125	NaN	1	1	Median	1.608	1.3125	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	14791000	2424200	12367000	14791000	2424200	12367000	0	0	0	0	0	0	0	0	0	59164	5386	55747	360634;360635	486897;486898	486897			2	
YLDLHDCYLK	1	Unmodified	1338.6278	0.62782285	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	52.013	51.486	2;3	0.00044592	44395	160511_QHF_FH_JSI11i_2	74.944	67.574			0.80956	0.81842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.80956	0.81842	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	98715000	54154000	44561000	0	0	0	0	0	0	98715000	54154000	44561000	0	0	0	59165	2319	55748	360636;360637	486899;486900	486900			2	
YLDLILNDFVR	0	Unmodified	1379.7449	0.74490152	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	5.5	6.06		3							1	1		1	2	98.394	95.145	2	1.8792E-09	88963	160511_QHF_FH_JSI11i_2	156.83	132.8			0.66891	0.68025	88.97	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66891	0.68025	NaN	1	0	Median	1.2959	1.4006	111.15	2	2	Median	661610000	380640000	280970000	0	0	0	0	0	0	316590000	163750000	152840000	345020000	216890000	128130000	59166	2614	55749	360638;360639;360640;360641	486901;486902;486903;486904	486903			4	
YLDPEYIDR	0	Unmodified	1182.5557	0.55570376	586	O75935	DCTN3	Dynactin subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	1	2	44.782	44.116	2	0.0034032	39631	160511_QHF_FH_JSI10i_1	60.478	39.779			1.0563	1.1525	29.074	5	2	Median	1.0563	0.87394	NaN	1	0	Median	0.97297	1.1525	NaN	1	0	Median	1.2875	1.2674	NaN	1	0	Median	0.99269	1.0196	50.884	2	2	Median	806960000	420500000	386470000	152730000	66567000	86163000	173740000	93561000	80178000	180940000	87034000	93906000	299550000	173340000	126220000	59167	586	55750	360642;360643;360644;360645;360646	486905;486906;486907;486908	486907			4	
YLDPSFFQHR	0	Unmodified	1308.6251	0.62512073	4874	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	55.237	54.294	3	0.017485	46685	160511_QHF_FH_JSI12i_2	50.353	50.353			0.87675	0.9224	38.157	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70575	0.70427	NaN	1	0	Median	1.0892	1.2081	NaN	1	0	Median	79480000	37721000	41759000	0	0	0	0	0	0	51352000	27938000	23414000	28128000	9783200	18344000	59168	4874	55751	360647;360648	486909	486909			0	
YLDQMEDLYEDFHIVK	1	Unmodified	2056.9452	0.94519382	357	O43681	ASNA1	ATPase ASNA1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By matching	2	0		5								1	2	1	1	95.926	95.624	3	0.0025082	84269	160511_QHF_FH_JSI10i_2	53.565	49.761			0.88716	0.89566	21.806	5	2	Median	1.327	1.1434	NaN	1	0	Median	0.72749	0.89254	0.49274	2	2	Median	0.88716	0.89141	NaN	1	0	Median	1.3072	1.4509	NaN	1	0	Median	94072000	49452000	44620000	11258000	5620600	5637400	29613000	18159000	11453000	25111000	12141000	12970000	28090000	13532000	14559000	59169	357	55752	360649;360650;360651;360652;360653	486910;486911;486912	486911			2	
YLDSIPPGQYMDSSLVK	1	Unmodified	1911.9288	0.92881548	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	22									7	3	7	5	76.627	76.094	2;3	5.8836E-11	67640	160511_QHF_FH_JSI9i_1	107.65	78.514			0.83691	0.79279	17.406	18	15	Median	0.91224	0.76265	15.851	6	5	Median	0.65881	0.76529	4.2275	3	2	Median	0.87802	0.84388	24.845	5	4	Median	0.7988	0.83391	7.6614	4	4	Median	1348200000	758820000	589400000	369620000	182550000	187070000	235710000	149920000	85787000	373340000	200560000	172780000	369550000	225780000	143770000	59170	850	55753	360654;360655;360656;360657;360658;360659;360660;360661;360662;360663;360664;360665;360666;360667;360668;360669;360670;360671;360672;360673;360674;360675	486913;486914;486915;486916;486917;486918;486919;486920;486921;486922;486923;486924;486925;486926;486927;486928;486929;486930;486931;486932;486933;486934;486935;486936;486937;486938;486939	486939			27	
YLEAGAAGLR	0	Unmodified	1019.54	0.53999412	5159	Q9NZL4	HSPBP1	Hsp70-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	32.302	31.298	2	2.6721E-07	27407	160511_QHF_FH_JSI10i_2	113.7	78.89			0.8842	0.90902	96.653	5	1	Median	0.95232	0.80973	NaN	1	0	Median	0.8842	1.0887	NaN	1	0	Median	0.96316	0.9783	NaN	1	0	Median	0.28522	0.31601	149.43	2	1	Median	970120000	535740000	434380000	167790000	75948000	91846000	206770000	124770000	82000000	325280000	162190000	163090000	270280000	172830000	97450000	59171	5159	55754	360676;360677;360678;360679;360680	486940;486941;486942;486943;486944;486945;486946	486945			7	
YLEANMTQSALPK	1	Unmodified	1464.7283	0.72826518	4992	Q9NTK5	OLA1	Obg-like ATPase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	2	3	3	51.832	49.87	2	2.055E-07	45045	160511_QHF_FH_JSI10i_1	167.2	136.88			0.75242	0.75705	13.659	9	1	Median	0.77167	0.64825	2.5335	2	0	Median	0.69606	0.84187	8.6967	2	0	Median	0.75021	0.72772	9.841	3	0	Plateau	0.72524	0.78311	21.329	2	1	Median	1840100000	1047200000	792890000	306170000	147850000	158320000	482310000	285540000	196770000	516710000	310250000	206460000	534920000	303580000	231340000	59172	4992	55755	360681;360682;360683;360684;360685;360686;360687;360688;360689;360690;360691	486947;486948;486949;486950;486951;486952;486953;486954;486955;486956;486957;486958;486959;486960;486961;486962;486963	486953			17	
YLEATGQLPVKK	2	Unmodified	1345.7606	0.76055158	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	38.153	36.801	3	0.046792	31281	160511_QHF_FH_JSI12i_2	26.942	23.72			1.3043	1.4034	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3043	1.4034	NaN	1	1	Median	31777000	15984000	15793000	0	0	0	0	0	0	0	0	0	31777000	15984000	15793000	59173	4221	55756	360692	486964	486964			1	
YLECSALQQDGVK	1	Unmodified	1509.7133	0.71334339	2128	P84095	RHOG	Rho-related GTP-binding protein RhoG	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	40.676	40.231	2	4.3991E-06	36255	160511_QHF_FH_JSI11i_1	124.42	89.891			0.74255	0.78798	35.019	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.3922	1.5868	NaN	1	1	Median	1.1244	1.0951	NaN	1	1	Median	0.74255	0.78798	NaN	1	1	Median	109480000	41906000	67576000	0	0	0	25469000	5218000	20251000	34598000	13783000	20815000	49416000	22905000	26511000	59174	2128	55757	360693;360694;360695	486965;486966;486967	486965			3	
YLECSALTQR	0	Unmodified	1239.5918	0.59177169	2045	P63000;P15153;P60763	RAC1;RAC2;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	4.8		4					1			1	1	2	1	34.985	32.233	2	5.3038E-08	28442	160511_QHF_FH_JSI10i_2	124.74	91.903			1.1912	1.1706	68.825	5	4	Median	6.1579	5.2053	NaN	1	1	Median	0.80073	0.9885	NaN	1	0	Median	1.4483	1.4527	30.529	2	2	Median	0.93533	1.0706	NaN	1	1	Median	508310000	233360000	274960000	52696000	13998000	38699000	113670000	61214000	52454000	205730000	89080000	116650000	136220000	69064000	67153000	59175	2045	55758	360696;360697;360698;360699;360700	486968;486969;486970;486971;486972;486973	486973			6	
YLEDFITNITNISQETVHTTR	0	Unmodified	2494.234	0.23398228	3683	Q8TAG9	EXOC6	Exocyst complex component 6	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	99.19	99.21	3	0.0047089	85959	160511_QHF_FH_JSI12i_3	37.09	29.286			0.3899	0.40378	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.3899	0.40378	NaN	1	1	Median	22690000	19782000	2908500	0	0	0	0	0	0	0	0	0	22690000	19782000	2908500	59176	3683	55759	360701	486974	486974			1	
YLEDGGLER	0	Unmodified	1050.4982	0.49818889	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1.33	0.471	2	1									2	1		25.983	25.519	2	0.00046315	22499	160511_QHF_FH_JSI10i_1	91.853	14.571			0.76264	0.89262	42.311	3	0	Median	NaN	NaN	NaN	0	0	Median	0.52492	0.62148	51.202	2	0	Median	0.92916	0.9081	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	315160000	177130000	138030000	0	0	0	173500000	110840000	62659000	141660000	66292000	75369000	0	0	0	59177	862	55760	360702;360703;360704	486975;486976	486975			2	
YLEDGGLERK	1	Unmodified	1178.5932	0.5931519	862	P07099	EPHX1	Epoxide hydrolase 1	yes	yes	0	0	0	1		By MS/MS		By MS/MS	2.33	0.471		2	1								1		2	19.673	19.286	2;3	0.0027893	15823	160511_QHF_FH_JSI12i_2	69.423	42.821			0.52959	0.59904	200.63	2	1	Median	NaN	NaN	NaN	0	0	Median	2.0063	2.4751	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.13979	0.14498	NaN	1	0	Median	121660000	70879000	50786000	0	0	0	81870000	39199000	42671000	0	0	0	39795000	31679000	8115700	59178	862	55761	360705;360706;360707	486977;486978;486979	486977			3	
YLEDRDLQ	0	Unmodified	1050.4982	0.49818889	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	1				By MS/MS	1	0	1												1	26.016	25.478	2	0.021928	22658	160511_QHF_FH_JSI12i_1	83.753	4.9823			0.97209	0.99391	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97209	0.99391	NaN	1	0	Median	174560000	74088000	100480000	0	0	0	0	0	0	0	0	0	174560000	74088000	100480000	59179	488	55762	360708	486980	486980			1	
YLEEERPFAIEQVTGMLLAK	1	Unmodified	2336.2086	0.20861915	723	O95757	HSPA4L	Heat shock 70 kDa protein 4L	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	101.26	101.27	3	1.8521E-05	87914	160511_QHF_FH_JSI12i_3	88.548	73.778			0.73874	0.75821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.73874	0.75821	NaN	1	1	Median	269030000	160600000	108420000	0	0	0	0	0	0	0	0	0	269030000	160600000	108420000	59180	723	55763	360709	486981	486981			1	
YLEEIATQMR	0	Unmodified	1252.6122	0.61217279	2176	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.2	3.63	1	7	1				1			2	3	3	2	47.059	45.132	2	2.6435E-07	41157	160511_QHF_FH_JSI12i_2	175.51	161.93			0.23425	0.27405	224.39	9	9	Median	0.79272	0.66935	324.49	2	2	Median	0.11752	0.14006	94.926	2	2	Median	1.1898	1.1505	231.23	3	3	Median	0.52812	0.59123	374.52	2	2	Median	1949200000	1180600000	768550000	431500000	219280000	212220000	273150000	241690000	31460000	734880000	430640000	304240000	509640000	289010000	220640000	59181	2176	55764	360710;360711;360712;360713;360714;360715;360716;360717;360718;360719	486982;486983;486984;486985;486986;486987;486988;486989;486990;486991	486983			10	
YLELLER	0	Unmodified	934.51238	0.51238239	485	O75153	CLUH	Clustered mitochondria protein homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		54.358	53.84	2	0.023293	46592	160511_QHF_FH_JSI11i_2	49.933	21.361			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59182	485	55765	360720	486992	486992			1	
YLELLGYR	0	Unmodified	1025.5546	0.55458155	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		66.036	65.342	2	0.0015233	56890	160511_QHF_FH_JSI11i_2	88.35	43.93			0.27132	0.30153	11.494	2	1	Median	NaN	NaN	NaN	0	0	Median	0.22716	0.27799	NaN	1	1	Median	0.32407	0.32706	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	115360000	77475000	37887000	0	0	0	44263000	32711000	11552000	71099000	44764000	26335000	0	0	0	59183	636	55766	360721;360722	486993;486994	486993			2	
YLELLGYRK	1	Unmodified	1153.6495	0.64954457	636	O94979	SEC31A	Protein transport protein Sec31A	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.8	6.03		2	12						6	6	6	5	3	55.735	52.055	2;3	3.0576E-05	45807	160511_QHF_FH_JSI11i_3	107.57	86.202			1.848	1.9592	144.08	19	19	Median	1.153	0.96245	176.2	6	6	Median	0.83288	1.0349	150.47	5	5	Median	2.1216	2.1255	156.23	5	5	Median	0.26945	0.27186	118.16	3	3	Plateau	1897200000	1020300000	876850000	423100000	181290000	241810000	404760000	216570000	188190000	665950000	319850000	346090000	403350000	302590000	100760000	59184	636	55767	360723;360724;360725;360726;360727;360728;360729;360730;360731;360732;360733;360734;360735;360736;360737;360738;360739;360740;360741;360742	486995;486996;486997;486998;486999;487000;487001;487002;487003;487004;487005;487006;487007;487008;487009;487010;487011;487012;487013;487014	486996			20	
YLEMIYSMCK	1	Unmodified	1336.5866	0.58655166	686	O95373	IPO7	Importin-7	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	12.5	6.06		1							3		1	1	2	72.561	66.523	2	4.9639E-05	35713	160513_QHF_FH_JSI11Kac_6	86.624	69.907			3.842	4.1793	30.575	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.842	4.1793	30.575	2	2	Median	50632000	16349000	34283000	0	0	0	12242000	12242000	0	0	0	0	38389000	4106700	34283000	59185	686	55768	360743;360744;360745;360746	487015;487016;487017;487018	487016			4	
YLENYDAIR	0	Unmodified	1155.556	0.55603811	1076	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	39.53	38.573	2	6.6655E-05	32851	160511_QHF_FH_JSI12i_2	96.668	81.999			0.86442	1.0234	61.264	4	2	Median	0.44352	0.38265	NaN	1	1	Median	0.82247	1.0289	NaN	1	0	Median	1.6913	1.6418	NaN	1	1	Median	0.90851	1.0179	NaN	1	0	Median	473790000	220790000	253000000	79516000	42178000	37338000	104140000	47717000	56425000	151280000	73078000	78201000	138850000	57821000	81032000	59186	1076	55769	360747;360748;360749;360750;360751;360752	487019;487020;487021;487022;487023;487024;487025	487021			7	
YLEPLYNDYRK	1	Unmodified	1472.73	0.72997974	3582	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		43.979	43.496	3	0.059334	37422	160511_QHF_FH_JSI11i_2	21.656	16.163			1.3441	1.3456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3441	1.3456	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	73522000	35224000	38298000	0	0	0	0	0	0	73522000	35224000	38298000	0	0	0	59187	3582	55770	360753	487026	487026			1	
YLEQLHQLYSDSFPMELR	0	Unmodified	2268.0885	0.088504016	1500	P40763	STAT3	Signal transducer and activator of transcription 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.25	0.433		3	1								1	2	1	92.346	91.789	3	0.0086569	81307	160511_QHF_FH_JSI10i_2	42.123	28.082			2.0661	2.2103	29.034	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.0629	1.2796	NaN	1	1	Median	1.9241	1.9504	NaN	1	0	Median	2.0661	2.2326	NaN	1	0	Median	75104000	33232000	41872000	0	0	0	25812000	16857000	8955500	23579000	5974000	17605000	25712000	10401000	15311000	59188	1500	55771	360754;360755;360756;360757	487027;487028;487029	487029			2	
YLESEEYQER	0	Unmodified	1344.5834	0.58337508	5707	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	22.298	21.767	2	0.00017227	19045	160511_QHF_FH_JSI12i_1	82.749	79.178			1.17	1.1844	9.8437	4	0	Median	1.2656	1.0412	NaN	1	0	Median	1.0993	1.2807	NaN	1	0	Median	1.164	1.1163	NaN	1	0	Median	1.176	1.2566	NaN	1	0	Median	389280000	174680000	214600000	93231000	37316000	55915000	83986000	46063000	37922000	105690000	46361000	59328000	106370000	44943000	61431000	59189	5707	55772	360758;360759;360760;360761	487030;487031;487032;487033;487034;487035	487032			6	
YLESFLAFTTHPSQFLR	0	Unmodified	2056.0418	0.04181182	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.36	6.54		4	3						4	3	4	1	3	95.584	92.972	2;3	3.8989E-69	46517	160513_QHF_FH_JSI10Kac_6	301.93	260.39			0.95422	0.92602	49.88	9	7	Median	2.5107	2.1875	NaN	1	1	Median	0.84624	1.029	50.227	4	3	Median	0.95422	0.92602	NaN	1	0	Median	0.74384	0.8306	57.011	3	3	Median	1420100000	830460000	589590000	67499000	10699000	56800000	1080100000	695010000	385110000	63626000	24421000	39205000	208800000	100330000	108470000	59190	4831	55773	360762;360763;360764;360765;360766;360767;360768;360769;360770;360771;360772	487036;487037;487038;487039;487040;487041;487042;487043;487044;487045;487046;487047;487048	487047			13	
YLESLGEEQRK	1	Unmodified	1350.6779	0.67794416	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.22	0.416		7	2							2	1	2	4	22.537	21.83	2;3	0.00015805	18747	160511_QHF_FH_JSI9i_2	78.043	55.125			0.51524	0.51666	80.063	7	7	Median	1.574	1.3802	NaN	1	1	Median	0.34013	0.41736	NaN	1	1	Median	0.65503	0.6485	128.42	2	2	Median	1.6858	1.8426	84.87	3	3	Plateau	710000000	404300000	305700000	17778000	4212600	13565000	204770000	135740000	69032000	172200000	100190000	72012000	315240000	164160000	151090000	59191	2195	55774	360773;360774;360775;360776;360777;360778;360779;360780;360781	487049;487050;487051;487052;487053;487054;487055;487056;487057	487052			9	
YLESLVQTQQQLIK	1	Unmodified	1689.9301	0.93013611	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	2.85	10	11						1		3	6	6	7	71.677	70.5	2;3	6.3721E-97	64061	160511_QHF_FH_JSI10i_1	229.16	184.85			1.3286	1.3124	93.796	18	18	Median	1.5754	1.3496	74.626	3	3	Median	1.2574	1.454	68.409	4	4	Median	1.2235	1.1605	93.678	5	5	Median	1.8294	2.0132	132.61	6	6	Median	673330000	345130000	328200000	86795000	40249000	46546000	163130000	95659000	67467000	202990000	97061000	105930000	220420000	112160000	108260000	59192	444	55775	360782;360783;360784;360785;360786;360787;360788;360789;360790;360791;360792;360793;360794;360795;360796;360797;360798;360799;360800;360801;360802;360803	487058;487059;487060;487061;487062;487063;487064;487065;487066;487067;487068;487069;487070;487071;487072;487073;487074;487075;487076;487077;487078;487079;487080	487072			23	
YLESNGIK	1	Unmodified	922.476	0.47599688	1372	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	18.044	17.358	2	0.0011298	14713	160511_QHF_FH_JSI10i_2	111.82	42.426			0.49833	0.41692	119.16	7	6	Median	1.6006	1.3527	166.45	2	1	Median	0.66709	0.81298	112.7	2	2	Median	1.059	1.0795	139	2	2	Median	0.19236	0.20676	NaN	1	1	Median	1953700000	1040400000	913310000	376850000	136070000	240770000	419170000	258330000	160840000	921220000	458530000	462690000	236500000	187490000	49008000	59193	1372	55776	360804;360805;360806;360807;360808;360809;360810	487081;487082;487083;487084;487085;487086;487087	487087			7	
YLETLLYSQQQLAK	1	Unmodified	1696.9036	0.903587	2448	Q13596	SNX1	Sorting nexin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	5	2	2	71.053	70.322	2;3	4.4031E-10	63839	160511_QHF_FH_JSI10i_1	110.86	95.591			0.42442	0.5008	145.74	5	5	Median	NaN	NaN	NaN	0	0	Median	0.24747	0.30398	180.48	3	3	Plateau	1.8232	1.7619	NaN	1	1	Median	0.25779	0.27385	NaN	1	1	Median	142270000	66957000	75309000	23247000	9470200	13777000	59229000	42995000	16234000	30432000	3634300	26798000	29358000	10858000	18500000	59194	2448	55777	360811;360812;360813;360814;360815;360816;360817;360818;360819;360820;360821	487088;487089;487090;487091;487092;487093;487094;487095;487096;487097;487098	487093			11	
YLETYLNLHWANVVYYSPNEVK	1	Unmodified	2714.3381	0.33805342	2639	Q15165	PON2	Serum paraoxonase/arylesterase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			88.569	81.375	3	2.8549E-10	44651	160513_QHF_FH_JSI9Kac_6	151.82	129.59			0.82675	0.83103	34.582	2	2	Median	1.2383	1.0612	NaN	1	1	Median	0.55198	0.65075	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	156250000	92241000	64007000	54161000	27130000	27031000	102090000	65111000	36975000	0	0	0	0	0	0	59195	2639	55778	360822;360823	487099;487100	487099			2	
YLEVVLNTLQQASQAQVDK	1	Unmodified	2146.127	0.12699801	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.37	4.5	7	15	2						3	5	8	7	7	94.66	93.674	2;3	3.7349E-64	84095	160511_QHF_FH_JSI11i_2	266.15	219.55			1.7413	1.967	235.11	19	18	Median	4.4466	3.8271	216.84	4	3	Median	0.01839	0.022398	219.15	4	4	Linear	2.7845	2.7675	274.9	6	6	Median	1.1511	1.1352	257.1	5	5	Median	1171000000	651260000	519740000	218960000	95187000	123770000	316690000	241080000	75611000	318540000	155820000	162720000	316800000	159180000	157630000	59196	2585	55779	360824;360825;360826;360827;360828;360829;360830;360831;360832;360833;360834;360835;360836;360837;360838;360839;360840;360841;360842;360843;360844;360845;360846;360847;360848;360849;360850	487101;487102;487103;487104;487105;487106;487107;487108;487109;487110;487111;487112;487113;487114;487115;487116;487117;487118;487119;487120;487121;487122;487123;487124;487125;487126;487127;487128;487129;487130;487131;487132	487124			32	
YLFALLVGTK	1	Unmodified	1123.6641	0.664132	5307	Q9UHP3	USP25	Ubiquitin carboxyl-terminal hydrolase 25	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.714	80.996	2	0.03159	45603	160513_QHF_FH_JSI10Kac_6	53.089	47.781			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26452000	0	26452000	0	0	0	26452000	0	26452000	0	0	0	0	0	0	59197	5307	55780	360851	487133	487133			1	
YLFGWMVPPK	1	Unmodified	1236.6365	0.63653704	2664	Q15392	DHCR24	Delta(24)-sterol reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.83		5	7						4	5	4	3	4	90.564	87.189	2;3	5.2593E-19	76939	160511_QHF_FH_JSI10i_3	157.52	142.85			0.39869	0.83917	27.347	11	3	Linear	0.96163	0.83917	30.081	3	2	Median	0.86629	0.97011	32.586	3	1	Median	0.79584	0.77897	1.042	2	0	Median	0.72904	0.79107	33.146	3	0	Plateau	841930000	474770000	367160000	187320000	100860000	86465000	266300000	166620000	99684000	225380000	123730000	101650000	162920000	83568000	79356000	59198	2664	55781	360852;360853;360854;360855;360856;360857;360858;360859;360860;360861;360862;360863;360864;360865;360866;360867	487134;487135;487136;487137;487138;487139;487140;487141;487142;487143;487144;487145;487146;487147;487148;487149;487150;487151;487152;487153;487154;487155;487156;487157;487158	487142			25	
YLFIFSVANMR	0	Oxidation (M)	1375.6958	0.69584284	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	1	1	2	86.732	78.46	2	2.0502E-11	43070	160513_QHF_FH_JSI9Kac_6	141.48	118.05			0.95886	1.0246	13.343	4	0	Median	1.3525	1.1438	NaN	1	0	Median	0.80789	0.96644	NaN	1	0	Median	0.88988	0.8474	NaN	1	0	Median	1.0332	1.0863	NaN	1	0	Median	1345900000	666760000	679130000	446340000	212210000	234130000	428450000	248280000	180170000	238190000	120020000	118170000	232910000	86254000	146660000	59199	5365	55782	360868;360869;360870;360871;360872	487159;487160;487161;487162;487163;487164;487165;487166	487162		2643	8	
YLFIFSVANMR	0	Unmodified	1359.7009	0.70092821	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	92.055	83.727	2	1.8595E-46	44940	160513_QHF_FH_JSI12Kac_6	214.12	189.97			1.0452	1.0559	18.645	4	0	Median	1.3628	1.1449	NaN	1	0	Median	0.81944	0.97385	NaN	1	0	Median	1.3331	1.2516	NaN	1	0	Median	0.77697	0.81987	NaN	1	0	Median	4077900000	1880100000	2197700000	886960000	361630000	525340000	1631500000	837280000	794270000	1116600000	442160000	674470000	442720000	239050000	203670000	59200	5365	55782	360873;360874;360875;360876	487167;487168;487169;487170;487171;487172;487173;487174	487172			8	
YLFPEDPSYSSTMIDDEALK	1	Unmodified	2320.0457	0.045695728	2356	Q13131	PRKAA1	5'-AMP-activated protein kinase catalytic subunit alpha-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	90.404	89.867	2;3	1.707E-10	81809	160511_QHF_FH_JSI12i_1	120.53	106.56			0.15211	0.14469	94.464	3	3	Median	0.10248	0.08395	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.15211	0.14469	NaN	1	1	Median	0.52589	0.52805	NaN	1	1	Median	162030000	135720000	26306000	72384000	64109000	8275600	0	0	0	72372000	62314000	10058000	17269000	9297000	7972100	59201	2356	55783	360877;360878;360879	487175;487176;487177	487176			3	
YLFTGLK	1	Unmodified	840.47454	0.47454032	1824	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.33	0.471		4	2							2	1	1	2	54.991	54.053	2	0.0099713	47448	160511_QHF_FH_JSI9i_2	76.847	51.848			1.0345	1.0617	9.6837	6	0	Median	1.2137	1.0039	19.747	2	0	Median	0.83935	1.0549	NaN	1	0	Median	1.0343	1.0685	NaN	1	0	Median	0.99889	1.061	6.068	2	0	Median	1824000000	864640000	959400000	371720000	152550000	219160000	310510000	161570000	148940000	597610000	276650000	320960000	544210000	273870000	270340000	59202	1824	55784	360880;360881;360882;360883;360884;360885	487178;487179;487180;487181;487182	487179			5	
YLFTLIR	0	Unmodified	924.54329	0.54328858	1895	P57740	NUP107	Nuclear pore complex protein Nup107	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6.38		4	4						4	3	3	3	3	76.711	73.377	2	2.2252E-24	37095	160513_QHF_FH_JSI12Kac_6	181.15	155.6			0.99475	1.4292	17.513	12	0	Linear	1.6214	1.4054	22.158	3	0	Plateau	0.91972	1.1072	13.354	3	0	Plateau	1.4038	1.3228	24.225	3	0	Plateau	1.0209	1.0434	5.7294	3	0	Plateau	1522800000	757170000	765640000	403670000	182400000	221260000	448670000	221160000	227510000	327360000	163500000	163860000	343110000	190110000	153010000	59203	1895	55785	360886;360887;360888;360889;360890;360891;360892;360893;360894;360895;360896;360897	487183;487184;487185;487186;487187;487188;487189;487190;487191;487192;487193;487194;487195;487196;487197;487198;487199;487200	487198			18	
YLFYFER	0	Unmodified	1036.5018	0.5018177	687	O95376	ARIH2	E3 ubiquitin-protein ligase ARIH2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	76.664	68.285	2	6.5732E-05	37779	160513_QHF_FH_JSI10Kac_6	123.99	90.473			0.88972	0.87382	13.755	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89383	1.0647	NaN	1	0	Median	0.86121	0.81719	NaN	1	0	Median	0.83546	0.87382	NaN	1	0	Median	195880000	95747000	100130000	0	0	0	98202000	52303000	45899000	64731000	30439000	34292000	32944000	13005000	19939000	59204	687	55786	360898;360899;360900	487201;487202;487203;487204;487205	487205			5	
YLGAMQVADK	1	Unmodified	1094.543	0.54303059	3817	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	38.2	37.25	2	0.0012666	31703	160511_QHF_FH_JSI11i_2	71.614	42.276			1.7288	1.9784	83.567	3	3	Median	2.6134	2.2041	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.48635	0.49259	NaN	1	1	Median	1.7288	1.9784	NaN	1	1	Median	252680000	127010000	125670000	61369000	20224000	41145000	0	0	0	123950000	76992000	46957000	67364000	29796000	37568000	59205	3817	55787	360901;360902;360903;360904	487206;487207;487208;487209	487209			4	
YLGDASVEPDPLQMPTFPPDYGFPERK	1	Unmodified	3065.4481	0.44807416	1120	P17568	NDUFB7	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	yes	yes	0	0	0	1			By MS/MS		2	0		1										1		100.77	100.65	3	0.017608	88318	160511_QHF_FH_JSI11i_2	27.722	9.4057			0.2294	0.23132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2294	0.23132	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23855000	22071000	1784200	0	0	0	0	0	0	23855000	22071000	1784200	0	0	0	59206	1120	55788	360905	487210	487210			1	
YLGFGTPSNLGK	1	Unmodified	1252.6452	0.64518747	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	3	2	2	59.336	58.458	2	5.7326E-23	51930	160511_QHF_FH_JSI11i_3	178.22	153.3			1.1611	1.1763	18.582	8	1	Median	1.2743	1.0624	17.123	2	0	Median	0.91567	1.1024	37.008	2	1	Median	1.3018	1.2552	11.899	2	0	Median	1.1827	1.2561	12.532	2	0	Median	704060000	309130000	394930000	96406000	37903000	58503000	121830000	64643000	57189000	243580000	100300000	143280000	242250000	106290000	135960000	59207	598	55789	360906;360907;360908;360909;360910;360911;360912;360913;360914	487211;487212;487213;487214;487215;487216;487217;487218;487219;487220;487221;487222;487223	487211			13	
YLGGSMDLSTFDFR	0	Unmodified	1607.729	0.72899346	744	O95983	MBD3	Methyl-CpG-binding domain protein 3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	88.603	87.65	2	0.012557	75670	160511_QHF_FH_JSI12i_2	45.973	31			1.177	1.3201	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.177	1.3201	NaN	1	0	Median	15266000	7247600	8018500	0	0	0	0	0	0	0	0	0	15266000	7247600	8018500	59208	744	55790	360915	487224	487224			1	
YLGINSDGLVVGR	0	Unmodified	1361.7303	0.73031409	2530	Q14331	FRG1	Protein FRG1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										1	2	68.506	67.444	2	0.00048557	58046	160511_QHF_FH_JSI12i_2	90.827	63.573			0.49331	0.48648	33.333	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49331	0.48648	NaN	1	1	Median	0.7259	0.8084	22.421	2	2	Median	114210000	67290000	46917000	0	0	0	0	0	0	41262000	29422000	11839000	72946000	37868000	35078000	59209	2530	55791	360916;360917;360918	487225;487226;487227	487226			3	
YLGIPGDK	1	Unmodified	861.45962	0.45961853	2778	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.04	2	4	2				1	1		1	3	3	3	40.842	38.147	2	0.0012793	33454	160511_QHF_FH_JSI9i_2	91.626	26.823			1.0021	1.0586	21.772	10	0	Median	1.2678	1.0435	NaN	1	0	Median	1.0104	1.166	20.914	3	0	Median	1.041	1.0128	26.184	3	0	Median	0.98266	1.0755	15.853	3	0	Plateau	2734000000	1400500000	1333500000	398620000	179740000	218870000	761080000	371660000	389420000	965240000	517010000	448230000	609030000	332070000	276960000	59210	2778	55792	360919;360920;360921;360922;360923;360924;360925;360926;360927;360928	487228;487229;487230;487231;487232;487233;487234;487235;487236;487237;487238;487239;487240;487241	487237			14	
YLGLLAMSK	1	Unmodified	994.55214	0.55213871	179	O14617	AP3D1	AP-3 complex subunit delta-1	yes	yes	0	0	0	0	By matching		By MS/MS		16	0									2	1		1		74.895	65.934	2	0.035113	35908	160513_QHF_FH_JSI11Kac_6	43.185	24.402			1.594	1.4268	33.191	2	0	Median	2.0973	1.8043	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2116	1.1284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93132000	32458000	60673000	39213000	12258000	26954000	0	0	0	53919000	20200000	33719000	0	0	0	59211	179	55793	360929;360930	487242	487242			1	
YLGLLENLR	0	Unmodified	1089.6182	0.61824444	100	O00159	MYO1C	Unconventional myosin-Ic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	75.655	75.513	2	7.9469E-06	67265	160511_QHF_FH_JSI11i_3	130.28	104.34			2.7012	2.6446	23.803	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3838	2.2349	NaN	1	1	Median	3.0609	3.1293	NaN	1	1	Median	209930000	70171000	139760000	0	0	0	0	0	0	146150000	54872000	91282000	63775000	15299000	48476000	59212	100	55794	360931;360932	487243;487244	487243			2	
YLGLPGSLK	1	Unmodified	946.54877	0.54876789	2466	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	58.934	58.029	2	0.0029291	49773	160511_QHF_FH_JSI12i_2	62.546	35.944			0.99716	1.0254	15.475	3	0	Median	NaN	NaN	NaN	0	0	Median	0.841	1.0254	NaN	1	0	Median	0.99716	1.0129	NaN	1	0	Median	1.1842	1.3321	NaN	1	0	Median	303420000	142950000	160470000	0	0	0	85410000	47298000	38111000	126960000	55441000	71518000	91053000	40212000	50841000	59213	2466	55795	360933;360934;360935	487245;487246;487247	487245			3	
YLGLYNDPNSNPK	1	Unmodified	1493.7151	0.71505795	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	43.381	42.898	2	8.7773E-07	36765	160511_QHF_FH_JSI12i_2	88.681	74.474			1.1236	1.09	51.345	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1236	1.09	51.345	2	2	Median	NaN	NaN	NaN	0	0	Median	41752000	15625000	26127000	0	0	0	0	0	0	41752000	15625000	26127000	0	0	0	59214	562	55796	360936;360937;360938;360939	487248;487249;487250;487251	487248			4	
YLGNSPYDIALVK	1	Unmodified	1451.766	0.76603089	5736	Q9Y6M0	PRSS21	Testisin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.4	5.33	3	4	1					2		3	2	3	2	73.156	70.288	2	6.1955E-07	62736	160511_QHF_FH_JSI9i_2	155.97	127.57			0.97637	0.97611	25.844	9	0	Median	0.8248	0.69182	9.9348	2	0	Median	0.76442	0.90684	5.1215	2	0	Median	0.97637	0.99917	28.066	3	0	Plateau	1.0092	1.0931	3.6055	2	0	Median	976110000	503790000	472310000	144900000	87886000	57009000	260180000	141400000	118780000	370580000	166900000	203690000	200450000	107610000	92836000	59215	5736	55797	360940;360941;360942;360943;360944;360945;360946;360947;360948;360949	487252;487253;487254;487255;487256;487257;487258;487259;487260;487261;487262;487263;487264;487265;487266;487267;487268;487269	487263			18	
YLGPAVLMQAYR	0	Unmodified	1380.7224	0.72239194	1196	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.91	5.25		5	4						2	3	3	3	2	77.699	75.749	2	3.351E-31	66534	160511_QHF_FH_JSI12i_3	185.84	181.22			0.8735	1.0255	14.629	11	5	Median	1.3119	1.052	12.435	3	1	Median	0.82383	1.0255	3.3181	3	2	Median	0.96788	0.91672	11.227	3	2	Median	0.74334	0.7978	9.8457	2	0	Median	1615600000	815530000	800060000	320530000	136550000	183970000	449170000	242190000	206970000	478650000	250730000	227920000	367240000	186050000	181190000	59216	1196	55798	360950;360951;360952;360953;360954;360955;360956;360957;360958;360959;360960	487270;487271;487272;487273;487274;487275;487276;487277;487278;487279;487280;487281;487282;487283;487284;487285	487284			16	
YLGQDYEQLR	0	Unmodified	1283.6146	0.61461563	871	P07384	CAPN1	Calpain-1 catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	40.766	40.129	2	1.5386E-05	34375	160511_QHF_FH_JSI11i_2	100.25	28.016			1.0138	1.0838	10.077	5	2	Median	1.3689	1.1859	NaN	1	0	Median	0.84357	1.0005	11.31	2	1	Median	1.0611	1.0528	9.2316	2	1	Median	NaN	NaN	NaN	0	0	Median	932860000	479420000	453440000	186490000	87698000	98790000	312110000	183840000	128280000	434260000	207890000	226370000	0	0	0	59217	871	55799	360961;360962;360963;360964;360965;360966	487286;487287;487288;487289;487290;487291	487291			6	
YLGQLHYLQSR	0	Unmodified	1376.7201	0.72008375	4703	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									6		2	1	3	53.168	44.165	2;3	3.2056E-07	24306	160513_QHF_FH_JSI10Kac_6	112.75	93.477			0.89845	1.0648	22.629	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.0638	1.2729	25.244	2	0	Median	NaN	NaN	NaN	0	0	Median	0.95906	1.0004	NaN	1	0	Median	146380000	81359000	65021000	0	0	0	111200000	67687000	43512000	0	0	0	35182000	13673000	21509000	59218	4703	55800	360967;360968;360969;360970;360971;360972	487292;487293;487294;487295;487296;487297	487297			6	
YLGYANEVGEAFR	0	Unmodified	1487.7045	0.70449327	5267	Q9UDX5	MTFP1	Mitochondrial fission process protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		5									2	2	1	65.529	64.716	2	0.00028277	57263	160511_QHF_FH_JSI10i_2	100.48	71.004			0.95385	0.99457	45.11	5	5	Median	NaN	NaN	NaN	0	0	Median	0.81703	1.0044	32.915	2	2	Median	0.73504	0.74933	40.041	2	2	Median	1.7105	1.8511	NaN	1	1	Median	171230000	84906000	86329000	0	0	0	67662000	31449000	36213000	77932000	44300000	33632000	25640000	9156700	16484000	59219	5267	55801	360973;360974;360975;360976;360977	487298;487299;487300;487301;487302	487301			5	
YLHENLPIPQR	0	Unmodified	1378.7357	0.73573382	1837	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		10	6							2	2	6	6	45.164	44.563	2;3	2.667E-07	39160	160511_QHF_FH_JSI9i_2	120.99	110.62			0.89055	0.90685	30.781	15	9	Median	1.0584	0.91935	1.9366	2	0	Median	0.79149	0.96643	9.8712	2	1	Median	0.92595	0.90569	37.218	6	4	Median	0.89055	0.89062	38.392	5	4	Median	1890600000	920900000	969720000	214990000	104520000	110470000	279900000	180350000	99544000	698620000	308840000	389780000	697120000	327190000	369930000	59220	1837	55802	360978;360979;360980;360981;360982;360983;360984;360985;360986;360987;360988;360989;360990;360991;360992;360993	487303;487304;487305;487306;487307;487308;487309;487310;487311;487312;487313;487314;487315;487316;487317;487318;487319;487320;487321;487322;487323;487324;487325;487326;487327;487328	487315			26	
YLHNFQGK	1	Unmodified	1005.5032	0.50321468	666	O95251	KAT7	Histone acetyltransferase KAT7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	13.544	13.617	3	0.0020151	10569	160511_QHF_FH_JSI12i_3	65.252	52.215			0.98778	0.99709	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98778	0.99709	NaN	1	1	Median	95325000	40585000	54740000	0	0	0	0	0	0	0	0	0	95325000	40585000	54740000	59221	666	55803	360994	487329	487329			1	
YLHPPPHLK	1	Unmodified	1100.6131	0.61309948	4947	Q9NR56	MBNL1	Muscleblind-like protein 1	no	no	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	19.983	19.992	3	0.00068168	16825	160511_QHF_FH_JSI11i_3	52.482	46.447			1.1646	1.1782	46.553	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5251	1.4116	NaN	1	0	Median	0.82447	0.83003	49.543	2	0	Median	350160000	182250000	167910000	0	0	0	0	0	0	86630000	33023000	53607000	263530000	149220000	114300000	59222	4947	55804	360995;360996;360997	487330;487331	487330			2	
YLHPSSYTK	1	Unmodified	1094.5397	0.53965977	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	13.255	13.139	2;3	0.015876	10120	160511_QHF_FH_JSI12i_3	39.848	19.148			1.4705	1.4645	86.989	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.2429	2.1094	NaN	1	1	Median	0.77059	0.76808	91.269	2	2	Median	372860000	205990000	166860000	0	0	0	9862200	9862200	0	145030000	51286000	93741000	217970000	144850000	73120000	59223	2454	55805	360998;360999;361000;361001	487332;487333;487334;487335;487336	487336			5	
YLHVGYIVPPAPEK	1	Unmodified	1581.8555	0.8555146	444	O60749	SNX2	Sorting nexin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.78		3							5	2	2	2	2	64.513	59.031	3	0.00035123	31917	160513_QHF_FH_JSI11Kac_6	51.726	40.464			1.0036	0.95403	22.385	7	3	Median	1.168	0.99102	15.213	2	1	Median	0.86276	1.041	12.336	2	1	Median	1.0093	0.9666	2.0768	2	1	Median	0.53433	0.57832	NaN	1	0	Median	581310000	315100000	266210000	123730000	61278000	62451000	204320000	117070000	87242000	229120000	124380000	104750000	24142000	12371000	11771000	59224	444	55806	361002;361003;361004;361005;361006;361007;361008;361009	487337;487338;487339;487340;487341;487342;487343;487344;487345;487346;487347	487337			11	
YLIALYTK	1	Unmodified	983.56917	0.56916898	5630	Q9Y4H2	IRS2	Insulin receptor substrate 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.452								2	5	2	3	1	1	71.917	62.774	2	0.0014638	32847	160513_QHF_FH_JSI12Kac_6	98.997	59.778			0.95792	0.82296	39.605	7	2	Median	1.0385	0.8852	10.31	2	0	Median	1.0488	1.2482	58.241	3	2	Median	0.82997	0.78248	NaN	1	0	Median	0.74453	0.78802	NaN	1	0	Median	472860000	229150000	243700000	77851000	31045000	46807000	192480000	87802000	104680000	135860000	68322000	67542000	66656000	41984000	24672000	59225	5630	55807	361010;361011;361012;361013;361014;361015;361016	487348;487349;487350;487351;487352;487353;487354	487352			7	
YLIANATNPESK	1	Unmodified	1319.6721	0.67213051	1288	P27348	YWHAQ	14-3-3 protein theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.48	5.86	5	4	4			3	3	2		4	5	6	6	41.297	36.888	2	6.2179E-23	31522	160511_QHF_FH_JSI12i_2	204.52	155.11			1.0079	1.0775	20.915	20	1	Median	1.094	0.9108	35.26	3	0	Median	0.80591	0.97948	7.4692	5	0	Median	1.1104	1.0818	22.543	6	1	Median	1.0632	1.1596	10.355	6	0	Median	11501000000	5769800000	5730900000	2172400000	971560000	1200800000	2792700000	1515400000	1277300000	3707000000	1788900000	1918100000	2828600000	1493900000	1334700000	59226	1288	55808	361017;361018;361019;361020;361021;361022;361023;361024;361025;361026;361027;361028;361029;361030;361031;361032;361033;361034;361035;361036;361037	487355;487356;487357;487358;487359;487360;487361;487362;487363;487364;487365;487366;487367;487368;487369;487370;487371;487372;487373;487374;487375;487376;487377;487378;487379;487380;487381;487382;487383;487384;487385;487386;487387;487388;487389;487390;487391;487392;487393;487394;487395;487396;487397;487398;487399;487400;487401;487402;487403	487362			49	
YLIATSEQPIAALHR	0	Unmodified	1681.9152	0.91515474	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	62.937	62.022	3	2.294E-05	53360	160511_QHF_FH_JSI12i_2	105.95	99.118			0.87341	0.92964	11.565	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84589	0.85664	NaN	1	1	Median	0.90183	1.0089	NaN	1	0	Median	213990000	103090000	110900000	0	0	0	0	0	0	141690000	59862000	81829000	72294000	43227000	29067000	59227	1667	55809	361038;361039	487404;487405;487406	487405			3	
YLIATSEQPIAALHRDEWLRPEDLPIK	1	Unmodified	3173.6873	0.68733364	1667	P49591	SARS	Serine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	2		By MS/MS			3	0			1								1			100.89	100.72	5	1.1958E-17	83265	160511_QHF_FH_JSI10i_3	104.53	97.803			0.76479	0.87632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76479	0.87632	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59537000	34156000	25381000	0	0	0	59537000	34156000	25381000	0	0	0	0	0	0	59228	1667	55810	361040	487407	487407			1	
YLIEIAK	1	Unmodified	848.50076	0.50075507	1813	P53990	IST1	IST1 homolog	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	54.217	52.84	2	0.048713	45331	160511_QHF_FH_JSI12i_2	43.124	15.017			0.97618	1.0895	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97618	1.0895	NaN	1	0	Median	107720000	46035000	61686000	0	0	0	0	0	0	0	0	0	107720000	46035000	61686000	59229	1813	55811	361041	487408	487408			1	
YLIGPYYRK	1	Unmodified	1171.639	0.63897988	3152	Q6UWJ1	TMCO3	Transmembrane and coiled-coil domain-containing protein 3	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		32.291	28.013	2	0.0090215	24262	160511_QHF_FH_JSI11i_3	57.559	15.485			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59230	3152	55812	361042;361043	487409;487410	487409			2	
YLILKDPNK	2	Acetyl (K)	1144.6492	0.64921022	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		65.846	54.79	2	0.013602	30555	160513_QHF_FH_JSI11Kac_4	59.245	47.755			0.42105	0.41271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.42105	0.41271	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	13792000	9560000	4232300	0	0	0	0	0	0	13792000	9560000	4232300	0	0	0	59231	282	55813	361044	487411	487411	152		1	
YLILPVHSNIPMMDQK	1	Unmodified	1897.9794	0.97941126	3221	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				83.248	82.641	3	0.00043848	72855	160511_QHF_FH_JSI9i_2	66.436	48.808			1.3188	1.108	NaN	1	1	Median	1.3188	1.108	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34609000	14970000	19639000	34609000	14970000	19639000	0	0	0	0	0	0	0	0	0	59232	3221	55814	361045	487412	487412			1	
YLINGVNANNTR	0	Unmodified	1347.6895	0.6895119	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.748	2	4	4							1	3	4	2	36.308	35.642	2	2.1381E-05	31128	160511_QHF_FH_JSI9i_2	131.44	111.14			0.99174	0.96458	67.965	9	3	Median	1.0424	0.87679	NaN	1	1	Median	0.75797	0.92351	93.315	3	1	Median	0.99174	1.0166	94.362	3	1	Median	0.98909	1.044	11.186	2	0	Median	600220000	300810000	299420000	67481000	26888000	40592000	157070000	93381000	63689000	220360000	102480000	117880000	155320000	78056000	77259000	59233	679	55815	361046;361047;361048;361049;361050;361051;361052;361053;361054;361055	487413;487414;487415;487416;487417;487418;487419;487420;487421;487422;487423;487424;487425;487426;487427	487420			15	
YLIPNAGDATK	1	Unmodified	1161.603	0.60298831	5019	Q9NUY8	TBC1D23	TBC1 domain family member 23	yes	yes	0	0	0	0			By MS/MS	By matching	1	0	2											1	1	40.49	40.019	2	0.001381	35959	160511_QHF_FH_JSI11i_1	64.04	51.413			1.0845	1.0961	14.192	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0412	0.99148	NaN	1	0	Median	1.1295	1.2118	NaN	1	0	Median	90862000	46943000	43920000	0	0	0	0	0	0	46934000	25555000	21379000	43928000	21388000	22541000	59234	5019	55816	361056;361057	487428	487428			1	
YLIPNATQPESK	1	Unmodified	1359.7034	0.70343063	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.08	6.22	4	5	3			3	3	6		5	7	6	6	46.699	40.717	2	1.0513E-15	35038	160511_QHF_FH_JSI12i_2	155.42	139.22			0.87369	0.89868	21.012	22	4	Median	1.1236	0.91703	31.962	4	2	Median	0.79188	0.96392	23.378	7	2	Median	0.91014	0.89099	6.1044	5	0	Median	0.8438	0.90695	21.679	6	0	Median	14355000000	6643000000	7712200000	2918700000	1158000000	1760700000	3464600000	1857500000	1607100000	3554500000	1718900000	1835600000	4417300000	1908500000	2508800000	59235	1384	55817	361058;361059;361060;361061;361062;361063;361064;361065;361066;361067;361068;361069;361070;361071;361072;361073;361074;361075;361076;361077;361078;361079;361080;361081	487429;487430;487431;487432;487433;487434;487435;487436;487437;487438;487439;487440;487441;487442;487443;487444;487445;487446;487447;487448;487449;487450;487451;487452;487453;487454;487455;487456;487457;487458;487459;487460;487461;487462;487463;487464;487465;487466;487467	487435			39	
YLKDVTLQK	2	Acetyl (K)	1148.6441	0.64412484	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	1	0	0	1			By MS/MS	By MS/MS	13.5	0.5						1	1					1	1	56.199	46.099	2	0.030935	25239	160513_QHF_FH_JSI11Kac_3	58.433	31.303			0.6178	0.67284	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.6178	0.67284	NaN	1	1	Median	11180000	7110800	4069300	0	0	0	0	0	0	1557100	1557100	0	9623000	5553700	4069300	59236	1143	55818	361082;361083	487468;487469	487468	997		2	
YLKGDHAGVLK	2	Acetyl (K)	1241.6768	0.67682195	2751	Q16658	FSCN1	Fascin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									4		1	2	1	38.702	29.598	2;3	0.00038685	16375	160513_QHF_FH_JSI11Kac_6	81.625	52.669			0.78532	0.79063	46.738	3	2	Median	NaN	NaN	NaN	0	0	Median	1.4721	1.7538	NaN	1	1	Median	0.78532	0.77107	NaN	1	1	Median	0.72563	0.79063	NaN	1	0	Median	55790000	32515000	23276000	0	0	0	17375000	7435300	9939800	26014000	17094000	8920100	12401000	7985500	4415600	59237	2751	55819	361084;361085;361086;361087	487470;487471;487472;487473	487470	2666		4	
YLKQQCHAQK	2	Acetyl (K)	1344.6609	0.66085431	4027	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		12.502	3.1893	3	0.025347	4597	160513_QHF_FH_JSI11Kac_6	42.336	32.649			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1705500	1705500	0	0	0	0	0	0	0	1705500	1705500	0	0	0	0	59238	4027	55820	361088	487474	487474	3038		1	
YLKSEPIPESNDGPVK	2	Acetyl (K)	1813.9098	0.90979459	1344	P30101	PDIA3	Protein disulfide-isomerase A3	yes	yes	1	0	0	1			By MS/MS		13	0						2						2		61.515	51.903	2;3	0.0035484	27272	160513_QHF_FH_JSI11Kac_3	74.76	65.571			0.23722	0.22595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23722	0.22595	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3543400	3392200	151160	0	0	0	0	0	0	3543400	3392200	151160	0	0	0	59239	1344	55821	361089;361090	487475;487476	487475	1275		2	
YLLADNRHYTFYVWK	1	Unmodified	1987.9945	0.9944677	2877	Q5I7T1;Q5BKT4	ALG10B;ALG10	Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase;Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase	yes	no	0	0	0	1		By MS/MS			16	0									1		1			76.295	70.045	4	3.2027E-07	38244	160513_QHF_FH_JSI10Kac_6	106.58	86.906			1.0747	1.2901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0747	1.2901	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94401000	41640000	52761000	0	0	0	94401000	41640000	52761000	0	0	0	0	0	0	59240	2877	55822	361091	487477	487477			1	
YLLDGISYLLQMLNYR	0	Oxidation (M)	1990.0234	0.023384564	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	2	1	99.049	91.105	2;3	2.2427E-31	51428	160513_QHF_FH_JSI11Kac_6	207.95	161.98			0.69666	0.78069	35.461	5	3	Median	NaN	NaN	NaN	0	0	Median	0.71354	0.83421	9.3759	2	2	Median	0.54346	0.51042	34.616	2	1	Median	0.94628	0.98113	NaN	1	0	Median	903470000	535060000	368420000	0	0	0	425910000	233230000	192680000	358490000	233720000	124770000	119080000	68108000	50968000	59241	24	55823	361092;361093;361094;361095;361096;361097	487478;487479;487480;487481;487482;487483	487479		7	6	
YLLDGISYLLQMLNYR	0	Unmodified	1974.0285	0.028469942	24	A6NDU8	C5orf51	UPF0600 protein C5orf51	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	101.72	93.275	2;3	1.3092E-182	56558	160513_QHF_FH_JSI10Kac_6	366.75	299.6			0.93261	1.044	44.871	8	0	Median	1.8066	1.5432	5.8347	2	0	Median	0.87816	1.044	1.3556	2	0	Median	1.0629	1.0465	12.197	2	0	Median	0.46072	0.48889	3.2447	2	0	Median	5194300000	2555300000	2639000000	1263500000	523760000	739760000	3775500000	1935600000	1839900000	49089000	21997000	27092000	106250000	73990000	32259000	59242	24	55823	361098;361099;361100;361101;361102;361103;361104;361105	487484;487485;487486;487487;487488;487489;487490;487491;487492;487493;487494	487494			11	
YLLETSGNLDGLEYK	1	Unmodified	1713.8461	0.8461317	1566	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	2	1	74.278	73.684	2	1.5617E-14	64617	160511_QHF_FH_JSI11i_2	156.69	156.69			1.0488	1.1388	64.722	7	2	Median	0.8708	0.73267	NaN	1	0	Median	0.91326	1.1388	103.41	3	1	Median	1.3059	1.3059	28.197	2	1	Median	1.0927	1.2471	NaN	1	0	Median	527450000	238900000	288550000	70021000	29670000	40350000	218830000	102260000	116580000	170990000	75530000	95457000	67608000	31442000	36166000	59243	1566	55824	361106;361107;361108;361109;361110;361111;361112	487495;487496;487497;487498;487499;487500;487501;487502;487503;487504	487502			10	
YLLFHLVK	1	Unmodified	1031.6168	0.61678788	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.1	4.55			1						6	3	1	1	2	74.857	66.063	3	0.00024137	36211	160513_QHF_FH_JSI10Kac_6	89.55	43.124			1.3597	1.2394	67.065	6	5	Median	0.78662	0.67094	73.153	2	2	Median	1.401	1.6093	NaN	1	0	Median	1.41	1.365	NaN	1	1	Median	1.6058	1.7553	80.358	2	2	Median	142170000	65300000	76867000	46864000	26677000	20186000	58675000	25137000	33538000	11062000	3410600	7651500	25566000	10074000	15491000	59244	2767	55825	361113;361114;361115;361116;361117;361118;361119	487505;487506;487507;487508;487509;487510;487511;487512	487512			8	
YLLGDAPVSPSSQK	1	Unmodified	1460.7511	0.75110911	5122	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	51.286	50.62	2	0.00097094	45905	160511_QHF_FH_JSI12i_1	83.397	59.053			0.7194	0.7389	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7194	0.7389	NaN	1	1	Median	34257000	22397000	11860000	0	0	0	0	0	0	0	0	0	34257000	22397000	11860000	59245	5122	55826	361120	487513	487513			1	
YLLGDMEGR	0	Unmodified	1052.4961	0.4960804	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	47.214	46.233	2	0.00020645	39642	160511_QHF_FH_JSI11i_2	85.064	48.043			1.0137	1.0302	8.3393	4	0	Median	1.1357	0.9641	NaN	1	0	Median	0.86328	1.0487	NaN	1	0	Median	0.98909	1.012	NaN	1	0	Median	1.0389	1.1729	NaN	1	0	Median	1264500000	640210000	624320000	245700000	121680000	124020000	256660000	139780000	116880000	431910000	205070000	226830000	330260000	173670000	156580000	59246	2734	55827	361121;361122;361123;361124	487514;487515;487516;487517;487518;487519	487517			6	
YLLGTSLAR	0	Unmodified	992.56548	0.56548059	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.55		5	3					1	4	5	3	2	3	54.679	50.355	2	3.7593E-07	42114	160511_QHF_FH_JSI10i_3	139.31	41.18			0.97581	0.95674	35.861	13	3	Median	1.4496	1.2363	27.772	5	2	Median	0.99275	1.1745	16.515	3	0	Median	0.76997	0.77877	28.877	2	0	Median	0.56615	0.58454	8.5935	3	1	Median	9163500000	4933300000	4230200000	3040800000	1378900000	1661900000	2261000000	1298000000	962950000	1235700000	727580000	508130000	2626100000	1528900000	1097200000	59247	779	55828	361125;361126;361127;361128;361129;361130;361131;361132;361133;361134;361135;361136;361137	487520;487521;487522;487523;487524;487525;487526;487527;487528;487529;487530	487522			11	
YLLGVQPAWGSAEAVDIDR	0	Unmodified	2059.0375	0.037454724	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		5								2		2	1	91.193	90.558	2	1.6932E-16	79797	160511_QHF_FH_JSI9i_2	123.84	106.03			0.91035	0.8832	34.01	3	3	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.274	1.2382	47.775	2	2	Median	1.1982	1.3252	NaN	1	1	Median	35975000	17006000	18969000	0	0	0	0	0	0	24027000	12737000	11290000	11948000	4269100	7678800	59248	2299	55829	361138;361139;361140;361141;361142	487531;487532;487533;487534;487535	487533			5	
YLLHGLECVVAMHQAQLISK	1	Unmodified	2309.2024	0.20242834	1839	P55010	EIF5	Eukaryotic translation initiation factor 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	83.602	83.411	3;4	7.6395E-12	74992	160511_QHF_FH_JSI11i_3	107.57	93.023			1.8714	1.9085	39.479	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8714	1.9085	39.479	2	2	Median	121060000	48749000	72311000	0	0	0	0	0	0	0	0	0	121060000	48749000	72311000	59249	1839	55830	361143;361144;361145	487536;487537;487538	487536			3	
YLLHYLVSLQNWLNR	0	Unmodified	1931.0418	0.041752241	3501	Q8N1B3	FAM58A	Cyclin-related protein FAM58A	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			93.1	87.379	3	0.00024075	50102	160513_QHF_FH_JSI10Kac_6	90.861	76.875			0.26815	0.32131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.26815	0.32131	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	154150000	130840000	23306000	0	0	0	154150000	130840000	23306000	0	0	0	0	0	0	59250	3501	55831	361146	487539	487539			1	
YLLLAGAPR	0	Unmodified	972.57565	0.57565135	1269	P26006	ITGA3	Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9	7		1							1			1	1	60.602	55.091	2	0.0066382	29776	160513_QHF_FH_JSI11Kac_6	58.819	49.874			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59251	1269	55832	361147;361148	487540;487541	487541			2	
YLLLASSPQDSR	0	Unmodified	1348.6987	0.69867961	4818	Q9HA65	TBC1D17	TBC1 domain family member 17	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	52.85	51.465	2	0.00010808	44053	160511_QHF_FH_JSI12i_2	84.17	63.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59252	4818	55833	361149	487542	487542			1	
YLLLFPNVLLMLSASPR	0	Unmodified	1946.1063	0.10632633	2503	Q14155	ARHGEF7	Rho guanine nucleotide exchange factor 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching		16	0									7	2	4	1		101.26	94.022	2;3	3.2185E-55	53295	160513_QHF_FH_JSI9Kac_6	190.1	150.18			1.0048	1.2053	81.515	7	4	Median	0.67092	0.57534	5.7903	2	0	Median	2.3905	2.8565	44.468	4	4	Linear	5.4748	5.1449	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2397500000	1065200000	1332300000	475610000	257400000	218220000	1782500000	712170000	1070300000	139350000	95636000	43719000	0	0	0	59253	2503	55834	361150;361151;361152;361153;361154;361155;361156	487543;487544;487545;487546;487547;487548;487549	487544			6	
YLLLGAIHK	1	Unmodified	1026.6226	0.62260154	3539	Q8N584	TTC39C	Tetratricopeptide repeat protein 39C	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.61		4	7						8	4	5	5	5	60.132	55.805	2;3	6.726E-05	46549	160511_QHF_FH_JSI10i_3	93.374	85.449			1.0166	0.95475	51.183	19	9	Median	1.5156	1.2687	55.771	4	2	Median	0.78523	0.93716	55.848	5	2	Median	1.0166	0.95475	41.559	5	2	Median	0.80839	0.83086	57.529	5	3	Median	1583600000	728400000	855170000	263580000	89145000	174440000	310910000	142090000	168820000	544940000	261240000	283700000	464130000	235920000	228210000	59254	3539	55835	361157;361158;361159;361160;361161;361162;361163;361164;361165;361166;361167;361168;361169;361170;361171;361172;361173;361174;361175	487550;487551;487552;487553;487554;487555;487556;487557;487558;487559;487560;487561;487562;487563;487564;487565;487566;487567;487568;487569;487570;487571;487572;487573;487574;487575;487576;487577;487578	487554			29	
YLLLGQGDFIR	0	Unmodified	1293.7081	0.70812208	4018	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								2		1	1	82.406	81.538	2	0.0026828	70399	160511_QHF_FH_JSI12i_2	56.729	42.056			0.89691	0.9674	4.3482	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89973	0.93811	NaN	1	0	Median	0.89411	0.99761	NaN	1	0	Median	67550000	34499000	33051000	0	0	0	0	0	0	39751000	20420000	19330000	27800000	14079000	13721000	59255	4018	55836	361176;361177;361178;361179	487579;487580;487581;487582;487583;487584	487579			6	
YLLLHLLGR	0	Unmodified	1096.6757	0.67569974	3324	Q86UE8;Q9UKI8	TLK2;TLK1	Serine/threonine-protein kinase tousled-like 2;Serine/threonine-protein kinase tousled-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	80.54	72.656	2;3	5.3286E-08	40441	160513_QHF_FH_JSI10Kac_6	113.5	97.539			0.78582	0.88506	57.208	6	3	Median	1.1238	0.95879	91.903	2	2	Median	0.53882	0.64146	32.404	2	1	Median	1.7942	1.7603	NaN	1	0	Median	0.9125	0.97109	NaN	1	0	Median	464200000	289990000	174220000	39015000	14080000	24935000	383050000	259800000	123250000	23995000	8521200	15474000	18139000	7585600	10553000	59256	3324	55837	361180;361181;361182;361183;361184;361185	487585;487586;487587;487588;487589;487590;487591;487592	487590			8	
YLLLLAAGDPR	0	Unmodified	1200.6867	0.68665836	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									3	2		1		80.977	72.118	2	6.5001E-08	39594	160513_QHF_FH_JSI11Kac_6	117.89	86.517			1.1458	1.0925	52.716	3	2	Median	1.6379	1.414	71.515	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1458	1.0925	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	117750000	54172000	63576000	66398000	24324000	42074000	0	0	0	51350000	29848000	21503000	0	0	0	59257	2997	55838	361186;361187;361188	487593;487594;487595;487596	487593			4	
YLLLMDLQDRNEK	1	Unmodified	1649.8447	0.84469192	1616	P48163	ME1	NADP-dependent malic enzyme	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		70.327	70.327	2;3	2.7751E-08	62825	160511_QHF_FH_JSI11i_3	103.22	87.681			1.6203	1.5077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6203	1.5077	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	78827000	29311000	49515000	0	0	0	0	0	0	78827000	29311000	49515000	0	0	0	59258	1616	55839	361189;361190	487597;487598	487598			2	
YLLLVLMDAER	0	Unmodified	1334.7268	0.72680861	5295	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			91.86	86.14	2	0.0025386	49255	160513_QHF_FH_JSI10Kac_6	70.1	41.701			0.73459	0.849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.73459	0.849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52699000	29463000	23237000	0	0	0	52699000	29463000	23237000	0	0	0	0	0	0	59259	5295	55840	361191	487599	487599			1	
YLLNFIAAMPLISLVNNFLK	1	Unmodified	2293.2908	0.29083264	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	105.48	97.028	2;3	1.3513E-139	59017	160513_QHF_FH_JSI10Kac_6	336.27	297.48			0.80267	0.77897	24.522	8	3	Median	0.72659	0.61578	24.115	2	0	Median	0.65646	0.77897	1.8415	2	0	Median	0.86966	0.85218	19.791	2	2	Median	0.99743	1.0792	1.8616	2	1	Median	1452400000	837880000	614490000	43945000	30654000	13291000	1348300000	777300000	570960000	30327000	15900000	14427000	29835000	14025000	15810000	59260	1304	55841	361192;361193;361194;361195;361196;361197;361198;361199	487600;487601;487602;487603;487604;487605;487606;487607;487608;487609;487610;487611;487612	487611			13	
YLLNFIAAMPLISLVNNFLK	1	Oxidation (M)	2309.2857	0.28574726	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				103.3	94.105	3	5.3295E-08	54394	160513_QHF_FH_JSI9Kac_6	95.554	87.333			0.97736	0.83463	NaN	1	0	Median	0.97736	0.83463	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50772000	23191000	27581000	50772000	23191000	27581000	0	0	0	0	0	0	0	0	0	59261	1304	55841	361200	487613;487614	487613		960	2	
YLLPLILGGR	0	Unmodified	1113.691	0.69101545	515	O75381	PEX14	Peroxisomal membrane protein PEX14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	96.02	95.709	2	0.013033	77901	160511_QHF_FH_JSI9i_3	44.447	34.859			0.61221	0.67534	43.361	4	2	Median	1.1157	0.9435	NaN	1	0	Median	0.79577	0.95141	NaN	1	0	Median	0.4368	0.41917	NaN	1	1	Median	0.47099	0.48339	NaN	1	1	Median	44059000	24690000	19369000	10483000	5068900	5414200	8089800	4095600	3994100	10151000	6255700	3895100	15335000	9269300	6065800	59262	515	55842	361201;361202;361203;361204	487615;487616;487617;487618;487619	487617			5	
YLLQEQLK	1	Unmodified	1033.5808	0.5807963	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	2	2	45.392	44.428	2	0.0020931	38696	160511_QHF_FH_JSI9i_2	80.462	37.339			0.97029	1.019	32.828	6	5	Median	1.0004	0.85824	NaN	1	1	Median	0.85526	1.0705	NaN	1	0	Median	1.3158	1.3536	47.136	2	2	Median	0.81569	0.92383	33.862	2	2	Median	2405500000	1238700000	1166700000	342390000	159640000	182750000	295750000	202810000	92947000	1002500000	457950000	544550000	764830000	418340000	346490000	59263	1459	55843	361205;361206;361207;361208;361209;361210;361211	487620;487621;487622;487623;487624;487625;487626;487627;487628	487623			9	
YLLQETWLEK	1	Unmodified	1321.6918	0.69180331	4109	Q96HE7	ERO1L	ERO1-like protein alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								2	2	1	1	75.28	74.425	2	2.02E-11	64301	160511_QHF_FH_JSI12i_2	152.28	112.28			0.84723	0.88541	42.377	4	2	Median	0.64066	0.54851	NaN	1	1	Median	0.58355	0.70356	NaN	1	1	Median	1.1204	1.1143	NaN	1	0	Median	1.2507	1.3908	NaN	1	0	Median	440180000	229740000	210440000	87038000	45688000	41350000	120040000	73216000	46819000	144580000	63370000	81207000	88527000	47468000	41059000	59264	4109	55844	361212;361213;361214;361215;361216;361217	487629;487630;487631;487632;487633;487634;487635;487636	487629			8	
YLLQPVLAPLHR	0	Unmodified	1418.8398	0.83980496	4580	Q9C0B7	TANGO6	Transport and Golgi organization protein 6 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	72.821	72.02	3	4.3129E-05	62220	160511_QHF_FH_JSI12i_3	68.069	58.88			1.0173	1.004	15.588	4	0	Median	1.1691	0.96583	NaN	1	0	Median	0.89941	1.0436	NaN	1	0	Median	1.1508	1.0944	NaN	1	0	Median	0.7394	0.76985	NaN	1	0	Median	93311000	50330000	42981000	17479000	9527100	7951600	13072000	7793200	5279200	25120000	11153000	13967000	37640000	21857000	15783000	59265	4580	55845	361218;361219;361220;361221	487637;487638;487639;487640;487641;487642;487643;487644	487643			8	
YLLSQSSPAPLTAAEEELR	0	Unmodified	2074.0582	0.058249746	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	6	8								3	4	2	5	85.597	84.991	2;3	4.5668E-54	73438	160511_QHF_FH_JSI12i_2	220.85	208.47			0.95762	0.92025	34.296	13	11	Median	0.83072	0.70338	21.604	3	3	Plateau	0.5866	0.69805	16.498	4	4	Median	1.2295	1.2025	5.6456	2	1	Median	1.3222	1.4628	29.007	4	3	Median	590200000	292000000	298210000	111930000	53550000	58381000	169070000	100590000	68477000	123650000	48985000	74666000	185550000	88870000	96681000	59266	2306	55846	361222;361223;361224;361225;361226;361227;361228;361229;361230;361231;361232;361233;361234;361235	487645;487646;487647;487648;487649;487650;487651;487652;487653;487654;487655;487656;487657;487658;487659;487660;487661	487647			17	
YLLSQSSPAPLTAAEEELRQIK	1	Unmodified	2443.2959	0.29585426	2306	Q12792	TWF1	Twinfilin-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	96.352	96.174	3	6.307E-10	83237	160511_QHF_FH_JSI12i_3	107.45	72.543			1.0328	1.1338	24.216	6	1	Median	0.98551	0.83191	NaN	1	0	Median	0.88399	1.0862	NaN	1	0	Median	1.2311	1.1581	43.536	2	1	Median	1.147	1.2126	3.4337	2	0	Median	255930000	114930000	141000000	26788000	13191000	13597000	34531000	18391000	16140000	75852000	27115000	48738000	118750000	56233000	62522000	59267	2306	55847	361236;361237;361238;361239;361240;361241	487662;487663;487664;487665;487666;487667;487668;487669;487670	487669			9	
YLLSSAYVDSHK	1	Unmodified	1381.6878	0.68778057	3844	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	41.377	40.849	2;3	0.039456	36885	160511_QHF_FH_JSI11i_1	38.303	3.008			0.61554	0.66265	39.614	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.44243	0.42871	NaN	1	0	Median	0.75607	0.79153	25.135	2	0	Median	97297000	55027000	42270000	0	0	0	0	0	0	33784000	22405000	11379000	63513000	32622000	30891000	59268	3844	55848	361242;361243;361244	487671;487672	487671			2	
YLLTMDK	1	Unmodified	882.45209	0.45209032	5254	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.577	1	4	1							1	2	2	1	45.216	44.094	2	0.0049209	37675	160511_QHF_FH_JSI11i_2	84.244	27.733			0.7707	0.84412	25.754	4	2	Median	0.75493	0.65042	NaN	1	1	Median	0.7719	0.89616	NaN	1	0	Median	0.76951	0.7951	NaN	1	1	Median	1.0688	1.204	NaN	1	0	Median	871670000	343700000	527970000	182160000	69008000	113150000	24548000	14431000	10117000	398330000	123140000	275190000	266640000	137130000	129510000	59269	5254	55849	361245;361246;361247;361248;361249;361250	487673;487674;487675;487676;487677;487678;487679	487679			7	
YLLTPSMQK	1	Unmodified	1079.5685	0.56851706	3950	Q969U7	PSMG2	Proteasome assembly chaperone 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.75	0.433	1	3								1		2	1	47.446	46.602	2	0.00083406	40641	160511_QHF_FH_JSI9i_2	73.248	63.017			1.1011	1.0166	31.242	4	1	Median	1.1295	0.96328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.83324	0.8199	38.032	2	1	Median	1.1768	1.3137	NaN	1	0	Median	544850000	259250000	285600000	113040000	58777000	54259000	0	0	0	292460000	131580000	160880000	139350000	68891000	70461000	59270	3950	55850	361251;361252;361253;361254	487680;487681;487682;487683	487682			4	
YLLVPAFQGALTMK	1	Unmodified	1550.8531	0.85307176	2082	P78318	IGBP1	Immunoglobulin-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	100.96	100.84	2	9.704E-05	89335	160511_QHF_FH_JSI10i_2	110.66	85.003			0.80402	0.80801	15.404	4	0	Median	0.94913	0.79879	NaN	1	0	Median	0.49955	0.61888	NaN	1	0	Median	0.8155	0.81734	NaN	1	0	Median	0.7927	0.8825	NaN	1	0	Median	297670000	184400000	113270000	40482000	20820000	19662000	80768000	58110000	22658000	88457000	47927000	40530000	87966000	57544000	30422000	59271	2082	55851	361255;361256;361257;361258	487684;487685;487686;487687;487688	487688			5	
YLLVPAYIFAGWSIADSLK	1	Unmodified	2126.1452	0.14521426	2877	Q5I7T1;Q5BKT4	ALG10B;ALG10	Putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase;Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	16	0									4		2	1	1	100.45	92.879	3	2.685E-18	52425	160513_QHF_FH_JSI11Kac_6	133.45	116.76			0.6947	0.7954	53.418	4	3	Median	NaN	NaN	NaN	0	0	Median	0.69738	0.81878	28.787	2	2	Median	0.33113	0.3143	NaN	1	0	Median	0.86076	0.94712	NaN	1	1	Median	210930000	139050000	71887000	0	0	0	132620000	77251000	55373000	64768000	49539000	15229000	13542000	12257000	1284900	59272	2877	55852	361259;361260;361261;361262	487689;487690;487691;487692	487689			4	
YLLVVSTR	0	Unmodified	949.55967	0.55966693	3728	Q8TE77	SSH3	Protein phosphatase Slingshot homolog 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.471								2	4	2	2	1	1	59.164	49.404	2	0.00050914	25708	160513_QHF_FH_JSI12Kac_6	111.82	61.696			0.96098	1.0002	14.464	6	0	Median	1.051	0.89893	16.876	2	0	Median	0.93491	1.0892	13.843	2	0	Median	1.2313	1.1532	NaN	1	0	Median	0.90775	0.98008	NaN	1	0	Median	220350000	105850000	114510000	43281000	17271000	26010000	88885000	51001000	37883000	63023000	23981000	39042000	25163000	13593000	11571000	59273	3728	55853	361263;361264;361265;361266;361267;361268	487693;487694;487695;487696;487697	487697			5	
YLLWAYTSSHDDK	1	Unmodified	1597.7413	0.7412727	2805	Q32NC0	C18orf21	UPF0711 protein C18orf21	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									10	1	3	3	3	69.1	60.25	2;3	5.9003E-20	32967	160513_QHF_FH_JSI10Kac_6	189.72	152.53			0.96766	1.0921	35.615	8	4	Median	1.5807	1.3708	NaN	1	0	Median	0.92087	1.1016	41.999	3	2	Median	1.181	1.1715	NaN	1	0	Median	1.0168	1.0828	27.014	3	2	Plateau	236410000	96841000	139570000	34681000	13668000	21013000	114900000	44689000	70214000	37969000	17951000	20018000	48855000	20533000	28322000	59274	2805	55854	361269;361270;361271;361272;361273;361274;361275;361276;361277;361278	487698;487699;487700;487701;487702;487703;487704;487705;487706	487705			8	
YLLYGEK	1	Unmodified	884.46437	0.46436956	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.059	36.626	2	0.048731	31263	160511_QHF_FH_JSI11i_2	47.916	29.11			3.245	3.2524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.245	3.2524	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	72903000	22942000	49961000	0	0	0	0	0	0	72903000	22942000	49961000	0	0	0	59275	1733	55855	361279	487707	487707			1	
YLLYGEKGTGK	2	Acetyl (K)	1269.6605	0.66050319	1733	P51398	DAP3	28S ribosomal protein S29, mitochondrial	yes	yes	1	0	0	1		By MS/MS		By MS/MS	14	0							2				1		1	56.046	45.434	2	0.0034985	25194	160513_QHF_FH_JSI10Kac_4	75.294	46.207			0.56175	0.61898	12.217	2	2	Median	NaN	NaN	NaN	0	0	Median	0.59103	0.67482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53393	0.56775	NaN	1	1	Median	4177300	2461200	1716100	0	0	0	2457600	1299600	1158100	0	0	0	1719700	1161700	558030	59276	1733	55856	361280;361281	487708;487709	487708	1749		2	
YLLYKPTFSQLYTFLAASFK	2	Unmodified	2400.277	0.27695671	3579	Q8N9R8	SCAI	Protein SCAI	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		97.915	89.836	3	5.5826E-45	50779	160513_QHF_FH_JSI11Kac_6	183.54	153.44			0.74069	0.91687	18.503	3	0	Plateau	1.0942	0.91687	NaN	1	0	Median	0.78813	0.9371	NaN	1	0	Median	0.7129	0.67314	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	565260000	309720000	255540000	130260000	61507000	68757000	214340000	123630000	90710000	220650000	124580000	96071000	0	0	0	59277	3579	55857	361282;361283;361284	487710;487711;487712;487713	487710			4	
YLMASDPNLQVLGAAYIQHK	1	Unmodified	2231.1409	0.14087394	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	2	1	85.23	81.792	3	1.0168E-25	40877	160513_QHF_FH_JSI11Kac_6	149.52	129.43			0.90493	0.95718	23.836	6	3	Median	1.298	1.0966	19.952	2	1	Median	0.85087	1.0461	NaN	1	0	Median	0.78912	0.78454	28.855	2	1	Median	0.67383	0.76891	NaN	1	1	Median	211350000	114100000	97245000	56455000	22454000	34001000	39906000	25217000	14689000	79138000	47068000	32070000	35847000	19363000	16484000	59278	5608	55858	361285;361286;361287;361288;361289;361290	487714;487715;487716;487717;487718;487719;487720;487721	487715			8	
YLMEEDEDAYK	1	Unmodified	1404.5755	0.57551251	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.147	40.508	2	3.1332E-38	36659	160511_QHF_FH_JSI12i_1	208.25	203.95			1.0657	1.0719	8.091	4	0	Median	1.3113	1.0827	NaN	1	0	Median	1.0457	1.2536	NaN	1	0	Median	1.0861	1.059	NaN	1	0	Median	1.0008	1.0613	NaN	1	0	Median	2563800000	1359700000	1204100000	367870000	168490000	199370000	696660000	404510000	292150000	765660000	366310000	399350000	733620000	420350000	313270000	59279	1590	55859	361291;361292;361293;361294	487722;487723;487724;487725;487726;487727;487728;487729;487730;487731;487732;487733;487734	487727			13	
YLMEEDEDAYK	1	Oxidation (M)	1420.5704	0.57042713	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	1	0	3									1		1	1	34.724	34.014	2	4.7805E-05	24478	160511_QHF_FH_JSI11i_1	109.29	102.99			2.3328	2.123	114.04	2	2	Median	5.6399	4.7549	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.96489	0.94787	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64354000	17971000	46383000	37886000	3749800	34136000	0	0	0	26468000	14221000	12247000	0	0	0	59280	1590	55859	361295;361296;361297	487735;487736;487737	487735		1256	3	
YLMEEDEDAYKK	2	Unmodified	1532.6705	0.67047553	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.53	3.08	13	13	6				1	1		6	9	11	8	34.518	33.228	2;3	1.5787E-16	26823	160511_QHF_FH_JSI9i_3	140.63	136.24			0.97642	0.89463	77.098	31	22	Median	1.0349	0.85214	22.712	5	0	Median	0.73383	0.86712	75.306	8	6	Median	0.81532	0.78061	100.4	10	10	Median	1.0015	1.0819	79.569	8	6	Median	12513000000	5850200000	6662700000	1997600000	833690000	1163900000	3578100000	1811500000	1766700000	4288000000	1899700000	2388300000	2649200000	1305300000	1343800000	59281	1590	55860	361298;361299;361300;361301;361302;361303;361304;361305;361306;361307;361308;361309;361310;361311;361312;361313;361314;361315;361316;361317;361318;361319;361320;361321;361322;361323;361324;361325;361326;361327;361328;361329;361330;361331	487738;487739;487740;487741;487742;487743;487744;487745;487746;487747;487748;487749;487750;487751;487752;487753;487754;487755;487756;487757;487758;487759;487760;487761;487762;487763;487764;487765;487766;487767;487768;487769;487770;487771;487772;487773;487774;487775;487776;487777;487778;487779;487780;487781;487782;487783;487784;487785;487786;487787;487788;487789;487790;487791;487792;487793	487761			56	
YLMEEDEDAYKK	2	Oxidation (M)	1548.6654	0.66539015	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.452	4	10								2	2	4	6	25.577	24.743	2;3	2.2734E-05	28151	160511_QHF_FH_JSI12i_2	95.401	90.403			0.99534	1.0967	69.978	13	7	Median	0.84554	0.7241	100.64	2	2	Median	1.1696	1.4126	18.634	2	1	Median	0.95881	0.93821	33.3	3	1	Median	0.90264	0.96266	90.411	6	3	Median	1067100000	556580000	510550000	76417000	38954000	37462000	141950000	67921000	74032000	160520000	89266000	71252000	688240000	360440000	327800000	59282	1590	55860	361332;361333;361334;361335;361336;361337;361338;361339;361340;361341;361342;361343;361344;361345	487794;487795;487796;487797;487798;487799;487800;487801;487802;487803;487804;487805;487806;487807	487797		1256	14	
YLMEEDEDAYKK	2	Acetyl (K)	1574.681	0.68104021	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		55.393	45.817	2	0.002754	24762	160513_QHF_FH_JSI11Kac_3	77.662	72.564			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1728900	1728900	0	0	0	0	0	0	0	1728900	1728900	0	0	0	0	59283	1590	55860	361346	487808	487808	1609		1	
YLMIEEYLTK	1	Unmodified	1301.6577	0.65772599	732	O95817	BAG3	BAG family molecular chaperone regulator 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	88.292	87.671	2	4.0864E-05	75781	160511_QHF_FH_JSI12i_2	94.692	75.912			0.94773	0.95062	21.235	4	2	Linear	0.74546	0.63877	NaN	1	1	Median	0.80555	0.98634	NaN	1	1	Median	0.92919	0.91619	NaN	1	0	Median	0.91618	1.0072	NaN	1	0	Median	140110000	74755000	65354000	21000000	9800200	11200000	27306000	13667000	13640000	54795000	33682000	21113000	37008000	17607000	19401000	59284	732	55861	361347;361348;361349;361350	487809;487810;487811;487812;487813;487814	487810			6	
YLNAGAGGIAGAFIHEK	1	Unmodified	1687.8682	0.86820455	2757	Q16719	KYNU	Kynureninase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.42	5.48		6	9						4	5	6	4	4	67.733	65.081	2;3	1.822E-22	57887	160511_QHF_FH_JSI11i_3	169.61	163.03			0.87194	0.82859	33.635	16	7	Median	1.0923	0.90458	36.188	4	2	Median	0.84988	0.98621	39.619	5	2	Median	0.89457	0.84395	16.729	3	0	Median	0.65818	0.66583	44.522	4	3	Median	7014700000	3745900000	3268800000	646150000	296370000	349780000	2079600000	1244300000	835250000	2409100000	1194700000	1214400000	1879900000	1010600000	869380000	59285	2757	55862	361351;361352;361353;361354;361355;361356;361357;361358;361359;361360;361361;361362;361363;361364;361365;361366;361367;361368;361369	487815;487816;487817;487818;487819;487820;487821;487822;487823;487824;487825;487826;487827;487828;487829;487830;487831;487832;487833;487834;487835;487836;487837;487838;487839;487840;487841;487842	487816			28	
YLNAGAGGIAGAFIHEKHAHTIK	2	Acetyl (K)	2417.2604	0.26041222	2757	Q16719	KYNU	Kynureninase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.687	64.304	5	3.3968E-05	34906	160513_QHF_FH_JSI11Kac_6	83.245	66.739			0.14007	0.1348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.14007	0.1348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	30467000	28267000	2200700	0	0	0	0	0	0	30467000	28267000	2200700	0	0	0	59286	2757	55863	361370	487843	487843	2668		1	
YLNEAAGVAAEEAR	0	Unmodified	1462.7052	0.70522155	3482	Q8IZH2	XRN1	5'-3' exoribonuclease 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.67	0.471	1	2									1	1	1	37.597	37.19	2	0.00022664	31737	160511_QHF_FH_JSI11i_2	87.184	72.212			1.3547	1.4428	118.7	2	1	Median	NaN	NaN	NaN	0	0	Median	2.8794	3.34	NaN	1	1	Median	0.63733	0.62328	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	171300000	42088000	129210000	0	0	0	153440000	30803000	122640000	17858000	11286000	6572100	0	0	0	59287	3482	55864	361371;361372;361373	487844;487845;487846	487846			3	
YLNEQLYSGPSSAAQR	0	Unmodified	1782.8537	0.8536767	305	O43159	RRP8	Ribosomal RNA-processing protein 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	3	2	2	44.419	43.673	2;3	2.3999E-10	37615	160511_QHF_FH_JSI11i_2	148.68	123.24			0.72135	0.69592	35.596	6	5	Median	1.0694	0.92864	57.484	2	2	Median	0.5397	0.62551	8.3487	2	2	Median	0.91898	0.9105	31.273	2	1	Median	NaN	NaN	NaN	0	0	Median	170060000	92285000	77780000	37466000	18478000	18988000	38359000	27939000	10419000	94240000	45867000	48373000	0	0	0	59288	305	55865	361374;361375;361376;361377;361378;361379;361380;361381;361382	487847;487848;487849;487850;487851;487852;487853;487854;487855;487856;487857	487854			11	
YLNEYGAPDAGGLEHVPLGWSYWYALEK	1	Unmodified	3197.5135	0.5134516	1081	P15586	GNS	N-acetylglucosamine-6-sulfatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	93.264	84.914	3	2.1493E-99	45624	160513_QHF_FH_JSI12Kac_6	221.86	190.09			1.099	1.042	7.6	4	0	Median	1.2148	1.035	NaN	1	0	Median	0.87858	1.0098	NaN	1	0	Median	1.2726	1.1964	NaN	1	0	Median	0.99416	1.0491	NaN	1	0	Median	741140000	344190000	396960000	146110000	68181000	77926000	187970000	96804000	91164000	148080000	48325000	99760000	258980000	130880000	128110000	59289	1081	55866	361383;361384;361385;361386	487858;487859;487860;487861;487862;487863;487864;487865	487863			8	
YLNFFTK	1	Unmodified	931.48035	0.48035398	1010	P12004	PCNA	Proliferating cell nuclear antigen	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		8	6							4	4	3	3	62.191	61.22	2	0.0049995	51320	160511_QHF_FH_JSI10i_3	105.12	74.398			3.0413	2.8941	134.65	14	14	Median	1.2147	1.0112	129.68	4	4	Median	0.99695	1.2193	144.47	4	4	Median	4.7847	4.4999	177.79	3	3	Median	2.9979	3.3182	156.28	3	3	Median	15170000000	6985400000	8184700000	3250800000	1530600000	1720200000	3778300000	1879200000	1899100000	4052800000	1713600000	2339200000	4088200000	1862100000	2226200000	59290	1010	55867	361387;361388;361389;361390;361391;361392;361393;361394;361395;361396;361397;361398;361399;361400	487866;487867;487868;487869;487870;487871;487872;487873;487874;487875;487876;487877;487878;487879;487880;487881;487882;487883;487884;487885;487886;487887	487872			22	
YLNIFGESQPNPK	1	Unmodified	1505.7514	0.75144346	5345	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.69	3.58	4	8						1		2	3	4	4	62.486	61.693	2;3	9.9057E-41	52978	160511_QHF_FH_JSI12i_2	199.68	176.07			0.97454	0.95068	33.315	11	9	Median	1.246	1.0871	5.2837	2	2	Median	0.55336	0.68709	42.297	3	3	Median	0.97454	0.95068	53.623	3	3	Median	0.82848	0.94278	9.4808	3	1	Median	1149100000	644930000	504130000	187380000	82771000	104610000	343790000	208650000	135140000	345440000	213850000	131590000	272440000	139660000	132790000	59291	5345	55868	361401;361402;361403;361404;361405;361406;361407;361408;361409;361410;361411;361412;361413	487888;487889;487890;487891;487892;487893;487894;487895;487896;487897;487898;487899;487900;487901;487902	487890			14	
YLNNVVEQLK	1	Unmodified	1218.6608	0.66083754	2379	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								1	2	2	3	53.302	52.343	2	1.1773E-06	45282	160511_QHF_FH_JSI11i_2	127.3	84.217			3.8615	4.2799	162.66	7	7	Median	5.4366	4.6	NaN	1	1	Median	1.2806	1.5733	222.3	2	2	Median	0.99836	1.0075	234.81	2	2	Median	0.97887	1.106	191.36	2	2	Median	438160000	198110000	240060000	54302000	11093000	43209000	111270000	59071000	52203000	131640000	59842000	71794000	140950000	68100000	72852000	59292	2379	55869	361414;361415;361416;361417;361418;361419;361420;361421	487903;487904;487905;487906;487907;487908;487909;487910	487908			8	
YLNTNPVGGLLEYAR	0	Unmodified	1678.8679	0.8678702	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.3	0.64	1	5	4							2	2	4	2	87.512	87.005	2;3	1.069E-65	77301	160511_QHF_FH_JSI10i_2	235.31	178.75			0.9464	0.9134	30.667	9	1	Median	1.0696	0.91838	4.7138	2	0	Median	0.5807	0.68167	40.022	2	1	Median	0.92135	0.9134	30.657	3	0	Median	1.1416	1.2428	20.272	2	0	Median	880940000	431640000	449300000	143710000	61247000	82461000	203900000	110640000	93261000	337090000	159560000	177530000	196240000	100180000	96054000	59293	1857	55870	361422;361423;361424;361425;361426;361427;361428;361429;361430;361431	487911;487912;487913;487914;487915;487916;487917;487918;487919;487920;487921;487922;487923;487924;487925;487926	487924			15	
YLNTQFIK	1	Unmodified	1025.5546	0.55458155	2454	Q13617	CUL2	Cullin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		48.223	47.378	2	0.010583	40687	160511_QHF_FH_JSI11i_2	63.534	28.726			0.76526	0.93795	50.395	3	1	Plateau	0.81488	0.70701	NaN	1	0	Median	0.76526	0.93795	NaN	1	0	Median	1.8728	1.8822	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	278180000	125540000	152640000	78567000	40980000	37587000	83145000	42100000	41045000	116470000	42456000	74011000	0	0	0	59294	2454	55871	361432;361433;361434	487927;487928	487927			2	
YLNWIGVPTK	1	Unmodified	1189.6495	0.64954457	449	O60825;Q16875	PFKFB2;PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1								1	2	3	71.106	70.386	2	0.00017002	61732	160511_QHF_FH_JSI11i_2	94.692	84.168			1.426	1.7521	43.746	5	5	Median	NaN	NaN	NaN	0	0	Median	1.426	1.7686	NaN	1	1	Median	1.0557	1.0649	70.426	2	2	Median	1.4868	1.6194	15.122	2	2	Median	329170000	169970000	159200000	0	0	0	59912000	26990000	32923000	176230000	97566000	78666000	93021000	45416000	47606000	59295	449	55872	361435;361436;361437;361438;361439;361440	487929;487930;487931;487932;487933;487934	487932			6	
YLPALDEFPHPPK	1	Unmodified	1522.782	0.78201531	1892	P57678	GEMIN4	Gem-associated protein 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	2	0		3									1	1	1	73.216	72.325	3	0.002929	64480	160511_QHF_FH_JSI10i_2	54.199	49.651			0.86846	0.91288	11.997	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.63499	0.75239	NaN	1	1	Median	0.89028	0.91288	NaN	1	0	Median	0.82013	0.93729	NaN	1	0	Median	163230000	97908000	65321000	0	0	0	50015000	28176000	21839000	58562000	35904000	22658000	54651000	33828000	20823000	59296	1892	55873	361441;361442;361443	487935;487936	487936			1	
YLPALGYSK	1	Unmodified	1010.5437	0.54368251	1823	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	6	3	4	2					1	2	4	2	3	3	55.102	52.048	2	3.1964E-05	44842	160511_QHF_FH_JSI11i_2	101.54	44.261			0.92053	0.98195	23.933	12	1	Median	0.98509	0.84905	39.175	4	1	Median	0.86835	1.0594	9.6452	2	0	Median	0.88949	0.87654	18.31	3	0	Median	0.68063	0.75116	18.053	3	0	Plateau	1750800000	928580000	822260000	386800000	179060000	207740000	368070000	199440000	168630000	515390000	282240000	233150000	480570000	267840000	212730000	59297	1823	55874	361444;361445;361446;361447;361448;361449;361450;361451;361452;361453;361454;361455	487937;487938;487939;487940;487941;487942;487943;487944;487945;487946;487947;487948;487949;487950;487951	487944			15	
YLPDIIK	1	Unmodified	860.50076	0.50075507	279	O15355	PPM1G	Protein phosphatase 1G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	60.624	59.877	2	0.012047	51299	160511_QHF_FH_JSI12i_2	74.415	35.197			0.81402	1.0951	41.268	6	2	Linear	1.0038	0.88193	NaN	1	0	Median	0.50538	0.60753	61.043	2	1	Median	0.7274	0.71832	53.889	2	1	Median	0.88261	0.97866	NaN	1	0	Median	744260000	392470000	351800000	130930000	70987000	59939000	183980000	96188000	87787000	288940000	153140000	135790000	140430000	72146000	68279000	59298	279	55875	361456;361457;361458;361459;361460;361461	487952;487953;487954;487955;487956;487957;487958	487954			7	
YLPDTLLLEECGLLRK	1	Unmodified	1932.039	0.039034628	1199	P21964	COMT	Catechol O-methyltransferase	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	92.758	92.735	3	0.0071081	80356	160511_QHF_FH_JSI12i_3	46.926	37.642			2.3005	2.157	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3005	2.157	NaN	1	1	Median	32106000	10690000	21416000	0	0	0	0	0	0	0	0	0	32106000	10690000	21416000	59299	1199	55876	361462	487959	487959			1	
YLPELMAEK	1	Unmodified	1092.5525	0.55253264	2255	Q07666;Q5VWX1;O75525	KHDRBS1;KHDRBS2;KHDRBS3	KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.62	2	4	3					3		2	4	5	1	62.66	59.34	2	0.00059589	51539	160511_QHF_FH_JSI11i_2	77.732	48.583			1.087	1.0818	38.467	12	7	Median	1.2183	1.0065	9.0437	2	1	Median	1.1082	1.3359	25.759	4	2	Median	0.97008	1.0176	55.546	5	4	Median	1.0428	1.1781	NaN	1	0	Median	3857600000	2012800000	1844800000	767440000	347360000	420080000	903030000	436980000	466040000	1381600000	774720000	606850000	805560000	453770000	351790000	59300	2255	55877	361463;361464;361465;361466;361467;361468;361469;361470;361471;361472;361473;361474	487960;487961;487962;487963;487964;487965;487966;487967;487968;487969;487970;487971;487972;487973;487974;487975;487976;487977;487978;487979;487980;487981;487982;487983	487974			24	
YLPENDLK	1	Unmodified	990.50221	0.50221163	160	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	34.351	33.416	2	0.0028117	29125	160511_QHF_FH_JSI9i_2	84.568	34.441			0.67082	0.68585	35.799	4	3	Median	0.86453	0.73258	NaN	1	1	Median	0.52051	0.64211	NaN	1	1	Median	0.45112	0.45252	NaN	1	1	Median	1.0047	1.0764	NaN	1	0	Median	203390000	114130000	89265000	54738000	27309000	27429000	46738000	27558000	19180000	59825000	40882000	18943000	42091000	18378000	23713000	59301	160	55878	361475;361476;361477;361478	487984;487985;487986;487987	487985			4	
YLPFMLSELR	0	Unmodified	1267.6635	0.66348007	5809				yes	yes	0	0	0	0	By MS/MS				3	0			1							1				32.78	31.363	3	0.023827	25615	160511_QHF_FH_JSI9i_3	23.851	8.9748	+		NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59302	5809	55879	361479	487988	487988			1	
YLPHSAGR	0	Unmodified	899.46135	0.46134987	1594	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	6.5		2	8						7	5	5	4	3	11.95	8.5723	2;3	5.8417E-05	7456	160511_QHF_FH_JSI11i_3	106.04	88.222			0.9806	0.96232	18.455	17	1	Median	1.2509	1.0634	6.2943	5	0	Median	0.87207	0.96563	26.26	5	1	Median	0.9162	0.87704	6.6123	4	0	Linear	0.71907	0.72595	13.28	3	0	Plateau	14305000000	7064500000	7240500000	6278400000	2971100000	3307200000	4640600000	2407600000	2233000000	1894500000	1001300000	893170000	1491500000	684460000	807060000	59303	1594	55880	361480;361481;361482;361483;361484;361485;361486;361487;361488;361489;361490;361491;361492;361493;361494;361495;361496	487989;487990;487991;487992;487993;487994;487995;487996;487997;487998;487999;488000;488001;488002;488003;488004;488005;488006;488007;488008;488009;488010;488011;488012;488013;488014;488015;488016;488017;488018;488019	487991			31	
YLPPATQVVLISATLPHEILEMTNK	1	Unmodified	2777.5037	0.50373854	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.35	6.4		4	7						6	5	4	3	5	101.25	98.342	3;4	4.0921E-34	50906	160513_QHF_FH_JSI11Kac_6	155.56	134.74			1.0633	0.99097	17.46	17	2	Median	1.1911	0.99847	7.3396	5	2	Median	0.79978	0.95923	5.2258	4	0	Median	1.0956	1.053	7.7837	3	0	Median	0.89198	0.94424	32.025	5	0	Median	5215800000	2633400000	2582500000	958410000	448800000	509610000	1261000000	691060000	569930000	1536700000	761760000	774940000	1459700000	731750000	727980000	59304	1481	55881	361497;361498;361499;361500;361501;361502;361503;361504;361505;361506;361507;361508;361509;361510;361511;361512;361513	488020;488021;488022;488023;488024;488025;488026;488027;488028;488029;488030;488031;488032;488033;488034;488035;488036;488037;488038;488039;488040;488041;488042;488043;488044;488045;488046;488047;488048	488028			29	
YLPPATQVVLISATLPHEILEMTNK	1	Oxidation (M)	2793.4987	0.49865316	1481	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	yes	yes	0	0	1	0	By MS/MS		By matching	By MS/MS	10.8	6.37			2						3	2		1	2	98.625	93.112	3	9.9224E-17	88654	160511_QHF_FH_JSI12i_3	121.1	118.22			0.92212	0.91446	17.73	5	2	Median	1.2466	1.0665	21.751	2	2	Median	NaN	NaN	NaN	0	0	Median	0.82986	0.77304	NaN	1	0	Median	0.8663	0.89385	6.0194	2	0	Median	531980000	242580000	289400000	171710000	67882000	103830000	0	0	0	97069000	51243000	45826000	263200000	123460000	139740000	59305	1481	55881	361514;361515;361516;361517;361518	488049;488050;488051;488052;488053	488051		1158	5	
YLPWALVASMLAGSLLK	1	Oxidation (M)	1848.0219	0.021928001	3558	Q8N6M3	FITM2	Fat storage-inducing transmembrane protein 2	yes	yes	0	0	1	0			By MS/MS	By MS/MS	16	0									2			1	1	100.85	91.42	3	3.712E-05	52530	160513_QHF_FH_JSI11Kac_6	79.346	69.007			0.76814	0.7814	77.198	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4353	1.3488	NaN	1	0	Median	0.41109	0.4527	NaN	1	1	Median	91460000	43521000	47939000	0	0	0	0	0	0	77825000	32073000	45752000	13635000	11448000	2187100	59306	3558	55882	361519;361520	488054;488055;488056	488055		2268	3	
YLPWALVASMLAGSLLK	1	Unmodified	1832.027	0.027013379	3558	Q8N6M3	FITM2	Fat storage-inducing transmembrane protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	103.29	94.847	2;3	1.3089E-69	54371	160513_QHF_FH_JSI9Kac_6	256.52	228.86			0.67167	0.63923	45.691	8	0	Median	1.1147	0.95749	92.087	2	0	Median	0.80131	0.95181	7.2569	2	0	Median	0.67167	0.63923	12.152	2	0	Median	0.46464	0.5068	6.7352	2	0	Median	2708400000	1264800000	1443600000	750910000	273050000	477870000	1475400000	692670000	782740000	445800000	272840000	172960000	36238000	26237000	10001000	59307	3558	55882	361521;361522;361523;361524;361525;361526;361527;361528	488057;488058;488059;488060;488061;488062;488063;488064;488065;488066;488067;488068;488069;488070;488071;488072	488063			16	
YLQAASNNSR	0	Unmodified	1122.5418	0.54178503	5482	Q9UQR1	ZNF148	Zinc finger protein 148	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	8.7055	8.0812	2	0.015736	5847	160511_QHF_FH_JSI12i_2	51.066	32.742			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11122000	11122000	0	0	0	0	0	0	0	0	0	0	11122000	11122000	0	59308	5482	55883	361529	488073	488073			1	
YLQAIMDSNAQSHK	1	Unmodified	1604.7617	0.76169057	2452	Q13614	MTMR2	Myotubularin-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	34.185	33.499	3	0.00011802	28228	160511_QHF_FH_JSI12i_3	92.265	81.221			0.089655	0.093622	132.18	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.089655	0.093622	132.18	2	2	Median	187330000	164400000	22929000	16222000	16222000	0	51065000	31153000	19913000	72076000	72076000	0	47966000	44950000	3017000	59309	2452	55884	361530;361531;361532;361533;361534;361535;361536	488074;488075;488076;488077;488078;488079;488080;488081;488082	488082			9	
YLQAVGMFR	0	Unmodified	1083.5535	0.55353569	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.5	6.6		6	4						6	6	4	4	2	62.788	58.171	2	9.2465E-06	31539	160513_QHF_FH_JSI11Kac_6	125.01	110.14			0.54148	0.54205	119.35	13	13	Median	0.71836	0.62623	113.5	5	5	Median	1.1082	1.2799	149.35	4	4	Median	0.30502	0.29531	143.03	3	3	Plateau	0.54148	0.54205	NaN	1	1	Median	869640000	423490000	446150000	276510000	124200000	152310000	293040000	137130000	155910000	169300000	93848000	75448000	130800000	68312000	62487000	59310	1194	55885	361537;361538;361539;361540;361541;361542;361543;361544;361545;361546;361547;361548;361549;361550;361551;361552	488083;488084;488085;488086;488087;488088;488089;488090;488091;488092;488093;488094;488095;488096;488097;488098	488086			16	
YLQAVGMFR	0	Oxidation (M)	1099.5485	0.54845032	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			51.464	42.544	2	0.046957	22701	160513_QHF_FH_JSI9Kac_6	52.403	26.509			1.1504	0.99734	NaN	1	1	Median	1.1504	0.99734	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15639000	7336000	8303000	10470000	7336000	3133700	5169300	0	5169300	0	0	0	0	0	0	59311	1194	55885	361553;361554	488099;488100	488099			2	
YLQAVVSSMPR	0	Unmodified	1249.6489	0.64889264	664	O95248	SBF1	Myotubularin-related protein 5	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	59.187	58.59	2	0.033376	52036	160511_QHF_FH_JSI11i_3	39.148	28.319			0.92961	0.91182	28.599	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.2642	1.4627	NaN	1	0	Median	0.85725	0.82571	NaN	1	0	Median	1.0604	1.0841	NaN	1	0	Median	990000000	518070000	471940000	0	0	0	124700000	57843000	66857000	467730000	264870000	202860000	397570000	195350000	202220000	59312	664	55886	361555;361556;361557	488101;488102;488103	488101			3	
YLQDLLAWVEENQHR	0	Unmodified	1912.9432	0.94316041	2636	Q15149	PLEC	Plectin	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			4									2	2	97.898	97.908	3	0.0003642	85099	160511_QHF_FH_JSI12i_3	59.513	54.304			0.68359	0.65295	175.17	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66825	0.63073	78.214	2	1	Median	2.5004	2.444	259.98	2	2	Median	131470000	55250000	76221000	0	0	0	0	0	0	70278000	31492000	38786000	61192000	23757000	37435000	59313	2636	55887	361558;361559;361560;361561	488104;488105;488106;488107	488107			3	
YLQDNPASGEK	1	Unmodified	1220.5673	0.56733108	2771	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				17.074	16.012	2	0.0005216	13268	160511_QHF_FH_JSI9i_1	77.744	38.596			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59314	2771	55888	361562	488108	488108			1	
YLQDSTFATSPHLESLLK	1	Unmodified	2049.0419	0.0418714	4487	Q9BW27	NUP85	Nuclear pore complex protein Nup85	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.762	77.943	3	2.2707E-07	68550	160511_QHF_FH_JSI11i_2	110.77	102.46			0.80409	0.88007	9.3244	4	2	Median	0.99249	0.85561	NaN	1	1	Median	0.74417	0.90524	NaN	1	1	Median	0.76031	0.75386	NaN	1	0	Median	0.85039	0.92981	NaN	1	0	Median	777540000	380250000	397290000	182550000	89172000	93379000	200380000	102890000	97491000	206980000	97117000	109860000	187630000	91073000	96558000	59315	4487	55889	361563;361564;361565;361566	488109;488110;488111	488110			3	
YLQEEVNINR	0	Unmodified	1276.6412	0.64116473	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		36.974	36.275	2	0.0016869	31005	160511_QHF_FH_JSI11i_2	76.221	65.356			1.1849	1.3056	33.958	2	2	Median	NaN	NaN	NaN	0	0	Median	1.3581	1.66	NaN	1	1	Median	1.0337	1.0269	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	99343000	35725000	63618000	0	0	0	54525000	17187000	37338000	44819000	18538000	26280000	0	0	0	59316	5298	55890	361567;361568	488112;488113	488112			2	
YLQEEVNINRK	1	Unmodified	1404.7361	0.73612775	5298	Q9UHD8	SEPT9	Septin-9	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									3	2	27.859	27.841	2;3	1.7353E-06	23901	160511_QHF_FH_JSI11i_3	125.23	97.364			1.1179	1.1361	44.285	5	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0988	1.0427	60.595	3	3	Median	1.1507	1.1546	2.2826	2	1	Median	565090000	293920000	271170000	0	0	0	0	0	0	339510000	167160000	172360000	225580000	126770000	98814000	59317	5298	55891	361569;361570;361571;361572;361573	488114;488115;488116;488117;488118;488119	488114			6	
YLQEFAPLGTGGGLYHFR	0	Unmodified	2025.0108	0.010846043	4124	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.5	0.5		1	1								1		1	83.018	82.593	3	0.00012068	73677	160511_QHF_FH_JSI10i_2	67.449	58.74			0.65872	0.75084	16.802	2	1	Median	NaN	NaN	NaN	0	0	Median	0.54271	0.66673	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.79954	0.84556	NaN	1	0	Median	93550000	55764000	37787000	0	0	0	34598000	24608000	9989400	0	0	0	58953000	31156000	27797000	59318	4124	55892	361574;361575	488120;488121	488120			1	
YLQEQAYR	0	Unmodified	1069.5193	0.51925868	3003	Q5VZK9	LRRC16A	Leucine-rich repeat-containing protein 16A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	18.464	17.809	2	0.0069632	14470	160511_QHF_FH_JSI12i_2	60.972	23.878			0.94545	1.0101	10.177	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0922	1.0854	NaN	1	0	Median	0.81841	0.93992	NaN	1	0	Median	92507000	50224000	42283000	0	0	0	0	0	0	44849000	26315000	18535000	47658000	23909000	23749000	59319	3003	55893	361576;361577	488122;488123	488122			2	
YLQEVIDVLETDGHFR	0	Unmodified	1932.9581	0.95814177	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		8								2	2	2	2	97.205	96.977	3	9.8364E-06	85948	160511_QHF_FH_JSI10i_2	94.203	85.554			2.4169	2.301	143.21	8	6	Median	2.6095	2.301	153.15	2	1	Median	1.4689	1.8136	223.4	2	2	Median	1.8304	1.9028	209.66	2	2	Median	2.1706	2.3766	158.59	2	1	Median	170620000	85189000	85430000	28849000	8357500	20492000	42303000	23891000	18413000	58982000	32373000	26609000	40485000	20568000	19917000	59320	2195	55894	361578;361579;361580;361581;361582;361583;361584;361585	488124;488125;488126;488127;488128;488129;488130;488131;488132	488132			9	
YLQEVIDVLETDGHFREK	1	Unmodified	2190.0957	0.095697884	2195	Q02818	NUCB1	Nucleobindin-1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	86.81	86.678	4	0.00016973	75216	160511_QHF_FH_JSI12i_3	72.819	63.565			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10858000	0	10858000	0	0	0	0	0	0	0	0	0	10858000	0	10858000	59321	2195	55895	361586	488133;488134	488133			2	
YLQGSSVQLR	0	Unmodified	1149.6142	0.6142217	3041	Q6EMK4	VASN	Vasorin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		31.53	31.141	2	0.012729	26410	160511_QHF_FH_JSI11i_2	54.712	36.174			1.6868	1.6799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6868	1.6799	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	51793000	19938000	31855000	0	0	0	0	0	0	51793000	19938000	31855000	0	0	0	59322	3041	55896	361587	488135	488135			1	
YLQLAEELIRPER	0	Unmodified	1628.8886	0.88860564	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.62	0.484		3	5							1	3	2	2	74.502	73.964	3	3.3803E-05	66007	160511_QHF_FH_JSI11i_3	111.79	88.655			13.335	13.258	230.94	8	8	Median	14.958	12.955	NaN	1	1	Median	1.2866	1.5761	270.84	3	3	Plateau	1.9071	1.7894	307.28	2	2	Median	1.4834	1.5204	309.53	2	2	Median	802700000	402400000	400300000	79064000	4245900	74818000	271110000	125390000	145730000	278190000	165640000	112550000	174340000	107130000	67210000	59323	2545	55897	361588;361589;361590;361591;361592;361593;361594;361595	488136;488137;488138;488139;488140;488141;488142;488143;488144;488145	488137			10	
YLQLQQEK	1	Unmodified	1048.5553	0.55530983	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	25.28	24.021	2	0.019551	19970	160511_QHF_FH_JSI12i_2	57.047	40.845			2.9192	3.1761	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.9192	3.1761	NaN	1	1	Median	39390000	16801000	22590000	0	0	0	0	0	0	0	0	0	39390000	16801000	22590000	59324	138	55898	361596	488146	488146			1	
YLQLTQSELSSYHRK	1	Unmodified	1851.9479	0.94791144	3547	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				43.814	42.23	4	0.06028	34480	160511_QHF_FH_JSI9i_3	18.465	14.363			0.80341	0.67408	NaN	1	1	Median	0.80341	0.67408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12323000	7521400	4801600	12323000	7521400	4801600	0	0	0	0	0	0	0	0	0	59325	3547	55899	361597	488147	488147			1	
YLQQELPVR	0	Unmodified	1144.6241	0.6240581	212	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									2	1	1	41.762	40.826	2	0.00031657	35982	160511_QHF_FH_JSI10i_2	92.439	57.632			0.72646	0.89691	35.157	3	1	Median	NaN	NaN	NaN	0	0	Median	0.72646	0.89691	NaN	1	1	Median	0.55793	0.56025	NaN	1	0	Median	1.0113	1.1145	NaN	1	0	Median	196060000	126800000	69262000	0	0	0	29019000	16054000	12965000	108160000	75345000	32810000	58887000	35400000	23487000	59326	212	55900	361598;361599;361600;361601	488148;488149;488150	488149			3	
YLQQIFESQR	0	Unmodified	1310.6619	0.66190017	4093	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	50.446	49.27	2	6.4148E-05	42213	160511_QHF_FH_JSI12i_2	114.84	67.759			0.58658	0.69338	5.5915	2	2	Median	NaN	NaN	NaN	0	0	Median	0.58178	0.72134	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.59143	0.6665	NaN	1	1	Median	173350000	101350000	72000000	0	0	0	80328000	46513000	33815000	0	0	0	93020000	54834000	38186000	59327	4093	55901	361602;361603	488151;488152	488151			2	
YLQQLAEK	1	Unmodified	991.53385	0.53384611	2168	Q01433	AMPD2	AMP deaminase 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	26.493	25.676	2	0.012756	21355	160511_QHF_FH_JSI12i_2	61.962	28.224			8.7851	9.6049	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.7851	9.6049	NaN	1	1	Median	45568000	29950000	15618000	0	0	0	0	0	0	27282000	27282000	0	18286000	2668100	15618000	59328	2168	55902	361604;361605	488153;488154	488153			2	
YLQQPGCLLVGTNMDNR	0	Unmodified	1977.9401	0.94006564	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		67.185	66.61	2	0.0036407	58177	160511_QHF_FH_JSI11i_2	54.776	42.215			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59329	23	55903	361606	488155	488155			1	
YLQQPGCLLVGTNMDNRLPLENGR	0	Unmodified	2757.3691	0.36905275	23	A6NDG6	PGP	Phosphoglycolate phosphatase	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		2	2							2	2			82.15	81.175	3	4.4631E-06	68029	160511_QHF_FH_JSI10i_3	63.184	49.996			1.095	1.266	0.12904	2	0	Median	NaN	NaN	NaN	0	0	Median	1.095	1.266	0.12904	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	67065000	29819000	37246000	0	0	0	67065000	29819000	37246000	0	0	0	0	0	0	59330	23	55904	361607;361608;361609;361610	488156;488157;488158;488159;488160;488161	488157			6	
YLQSLLAEVER	0	Unmodified	1319.7085	0.70851601	660	O95232	LUC7L3	Luc7-like protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	75.387	74.381	2	8.1557E-06	64305	160511_QHF_FH_JSI12i_2	112.36	66.677			0.21567	0.24766	0.31245	2	2	Median	NaN	NaN	NaN	0	0	Median	0.2038	0.2482	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22823	0.24711	NaN	1	1	Median	83842000	64357000	19485000	0	0	0	51219000	40051000	11167000	0	0	0	32624000	24306000	8318000	59331	660	55905	361611;361612	488162;488163	488162			2	
YLQSNSNNWR	0	Unmodified	1280.5898	0.58979786	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.24		4	4				1	3	12	7	8	3	6	28.078	21.659	2	2.2123E-17	12168	160513_QHF_FH_JSI11Kac_6	166.16	149.96			0.77345	0.85055	47.998	20	5	Median	0.94979	0.81113	46.227	6	2	Median	0.75128	0.90557	56.236	7	3	Median	0.87501	0.85441	9.5058	2	0	Median	0.73838	0.77508	58.444	5	0	Median	692480000	378210000	314270000	158760000	76821000	81944000	397040000	226390000	170650000	51941000	26052000	25889000	84735000	48946000	35788000	59332	3290	55906	361613;361614;361615;361616;361617;361618;361619;361620;361621;361622;361623;361624;361625;361626;361627;361628;361629;361630;361631;361632;361633;361634;361635;361636	488164;488165;488166;488167;488168;488169;488170;488171;488172;488173;488174;488175;488176;488177;488178;488179;488180;488181;488182;488183;488184;488185;488186;488187;488188;488189	488168			26	
YLQSTQAIHDVFSQYK	1	Unmodified	1926.9476	0.94757708	3312	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	66.215	65.921	3	0.049623	57113	160511_QHF_FH_JSI12i_3	26.931	5.1279			52.29	53.715	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	52.29	53.715	NaN	1	1	Median	386940000	4805700	382130000	0	0	0	0	0	0	0	0	0	386940000	4805700	382130000	59333	3312	55907	361637	488190	488190			1	
YLQTLTTIAAEK	1	Unmodified	1350.7395	0.73948179	1286	P27105	STOM	Erythrocyte band 7 integral membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.11	6.3	4	7	2					4	2	3	5	6	5	61.056	57.423	2	1.4823E-06	31018	160513_QHF_FH_JSI11Kac_5	115.57	68.492			5.5781	5.476	225.68	13	13	Median	5.8652	5.0465	452.89	2	2	Median	4.6547	5.6036	43.386	3	3	Plateau	5.5781	5.465	248.52	5	5	Median	35.358	39.345	237.68	3	3	Plateau	944610000	426070000	518540000	183380000	88978000	94400000	205150000	113660000	91485000	361480000	185130000	176360000	194600000	38303000	156290000	59334	1286	55908	361638;361639;361640;361641;361642;361643;361644;361645;361646;361647;361648;361649;361650;361651;361652;361653;361654;361655;361656	488191;488192;488193;488194;488195;488196;488197;488198;488199;488200;488201;488202;488203;488204;488205;488206;488207;488208;488209	488203			19	
YLQTVQYGVHGNFPR	0	Unmodified	1777.89	0.89000263	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	58.205	48.896	3	0.00015835	26854	160513_QHF_FH_JSI10Kac_6	78.285	67.341			0.74549	0.87857	21.912	3	1	Median	1.3406	1.153	NaN	1	0	Median	0.74549	0.87857	NaN	1	0	Median	0.74438	0.74733	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	57792000	29711000	28081000	14257000	6353200	7903700	36504000	20186000	16318000	4817600	3171700	1646000	2213100	0	2213100	59335	2540	55909	361657;361658;361659;361660;361661	488210;488211;488212;488213;488214;488215	488214			6	
YLQVHILHPPLVPGK	1	Unmodified	1709.9981	0.99809651	281	O15360	FANCA	Fanconi anemia group A protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	12.8	5.63			1						3	1	1		2	71.496	65.049	4	6.0513E-05	57570	160511_QHF_FH_JSI12i_3	98.531	86.917			0.85335	0.8839	12.594	4	4	Median	0.8928	0.75118	NaN	1	1	Median	0.81563	0.98437	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.8496	0.8839	10.136	2	2	Median	85331000	46351000	38980000	14776000	7257600	7517900	26221000	13870000	12351000	0	0	0	44335000	25223000	19111000	59336	281	55910	361662;361663;361664;361665	488216;488217;488218;488219	488217			4	
YLQWEIGNK	1	Unmodified	1149.5819	0.58185893	3217	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	55.487	54.547	2	7.6351E-05	46798	160511_QHF_FH_JSI12i_2	114.28	81.161			0.58968	0.62826	25.855	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.513	0.52329	NaN	1	1	Median	0.67782	0.7543	NaN	1	1	Median	318650000	184900000	133750000	0	0	0	0	0	0	194240000	111350000	82892000	124410000	73548000	50860000	59337	3217	55911	361666;361667	488220;488221	488220			2	
YLRDVNCPFK	1	Unmodified	1310.6441	0.64414162	5486	Q9Y224	C14orf166	UPF0568 protein C14orf166	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							1	2	1	1	35.677	34.784	3	0.0015868	30267	160511_QHF_FH_JSI11i_3	64.439	49.563			2.2599	2.0229	128.38	5	5	Median	20.767	17.057	NaN	1	1	Median	0.76411	0.87833	73.064	2	2	Median	2.2599	2.0229	NaN	1	1	Median	3.6806	3.625	NaN	1	1	Median	220770000	101240000	119530000	27559000	2126000	25433000	117780000	70476000	47305000	47969000	20095000	27874000	27463000	8548100	18915000	59338	5486	55912	361668;361669;361670;361671;361672	488222;488223;488224;488225;488226	488222			5	
YLSATTGFGR	0	Unmodified	1071.5349	0.53490874	1884	P56937	HSD17B7	3-keto-steroid reductase	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			36.622	35.662	2	0.023218	31292	160511_QHF_FH_JSI10i_2	48.794	25.366			1.9405	2.3475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9405	2.3475	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43189000	14204000	28985000	0	0	0	43189000	14204000	28985000	0	0	0	0	0	0	59339	1884	55913	361673	488227	488227			1	
YLSEVASGDNK	1	Unmodified	1181.5564	0.55643205	1384	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.51	8	7	4			3	4	1		7	7	7	6	21.154	18.103	2	7.841E-25	16202	160511_QHF_FH_JSI12i_1	226.59	158.17			2.4395	2.8042	131	25	25	Median	2.5139	2.0984	130.24	6	6	Median	2.6021	3.0974	141.91	7	7	Median	1.2097	1.1983	157.92	6	6	Median	2.1821	2.4584	121	6	6	Median	16348000000	7582500000	8765900000	3889700000	1846600000	2043100000	4203800000	1865500000	2338300000	3525300000	1831500000	1693800000	4729600000	2039000000	2690700000	59340	1384	55914	361674;361675;361676;361677;361678;361679;361680;361681;361682;361683;361684;361685;361686;361687;361688;361689;361690;361691;361692;361693;361694;361695;361696;361697;361698;361699;361700	488228;488229;488230;488231;488232;488233;488234;488235;488236;488237;488238;488239;488240;488241;488242;488243;488244;488245;488246;488247;488248;488249;488250;488251;488252;488253;488254;488255	488235			28	
YLSFHFK	1	Unmodified	940.48069	0.48068833	1791	P53004	BLVRA	Biliverdin reductase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.2	5.92		4	7						4	5	4	3	3	51.18	47.678	2;3	0.00056508	41537	160511_QHF_FH_JSI11i_3	105.39	89.237			0.99661	0.99143	26.771	13	3	Median	1.1692	0.98666	19.625	4	0	Median	0.87001	1.0121	30.326	4	2	Median	1.1022	1.0459	15.434	2	0	Median	0.89075	0.90879	43.067	3	1	Median	5832300000	2827700000	3004600000	1571800000	639160000	932670000	1502700000	865860000	636810000	1034200000	488620000	545560000	1723600000	834060000	889530000	59341	1791	55915	361701;361702;361703;361704;361705;361706;361707;361708;361709;361710;361711;361712;361713;361714;361715	488256;488257;488258;488259;488260;488261;488262;488263;488264;488265;488266;488267;488268;488269;488270;488271;488272;488273;488274;488275;488276;488277;488278;488279;488280;488281;488282;488283;488284;488285;488286;488287;488288;488289;488290;488291;488292;488293;488294	488258			39	
YLSFLMGELLTR	0	Oxidation (M)	1457.7588	0.75883702	5794				yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		1	0	5									2	2	1		77.884	77.404	2	0.013518	68908	160511_QHF_FH_JSI9i_1	49.368	17.995	+		0.81031	0.94418	2.1477	5	0	Linear	1.1216	0.92498	0	2	0	Median	0.80043	0.94418	0	2	0	Median	0.99654	0.97478	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1034200000	557660000	476570000	314230000	159420000	154810000	513900000	268780000	245110000	206110000	129460000	76648000	0	0	0	59342	5794	55916	361716;361717;361718;361719;361720	488295;488296;488297	488297		2749	3	
YLSFTPPEK	1	Unmodified	1080.5492	0.54916182	2366	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	50.216	49.233	2	0.0045543	42352	160511_QHF_FH_JSI11i_2	56.729	49.018			0.95319	1.0075	13.5	4	2	Linear	1.0439	0.90744	NaN	1	1	Median	1.0182	1.2361	NaN	1	1	Median	0.95657	0.9613	NaN	1	0	Median	0.96404	1.0559	NaN	1	0	Median	302670000	151450000	151220000	56649000	30129000	26520000	57788000	29678000	28110000	104500000	52292000	52207000	83731000	39348000	44382000	59343	2366	55917	361721;361722;361723;361724	488298;488299;488300;488301	488300			4	
YLSGIAHFLEK	1	Unmodified	1276.6816	0.68157298	2299	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.6	5.2			8						2	4	2	3	1	69.642	67.749	2;3	8.6737E-07	60102	160511_QHF_FH_JSI11i_3	116.54	100.16			43.127	45.29	325.81	8	8	Median	76.308	60.508	325.03	3	3	Plateau	2.8188	3.2318	386.45	2	2	Median	1.2221	1.138	529.84	2	2	Median	42.951	43.547	NaN	1	1	Median	989860000	236020000	753840000	270650000	42161000	228490000	173660000	42330000	131330000	377240000	148180000	229060000	168310000	3346800	164960000	59344	2299	55918	361725;361726;361727;361728;361729;361730;361731;361732;361733;361734	488302;488303;488304;488305;488306;488307;488308;488309;488310;488311;488312;488313;488314	488303			13	
YLSHSEFK	1	Unmodified	1009.4869	0.48689592	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	0			By MS/MS		2.33	0.471		2	1									3		14.394	14.245	3	0.001249	11362	160511_QHF_FH_JSI11i_2	67.993	51.216			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59345	3860	55919	361735;361736;361737	488315;488316;488317	488316			3	
YLSKPPK	2	Unmodified	831.48544	0.48543935	5202	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By matching	3	0			3							1	1		1	8.3442	7.9959	3	0.043876	5808	160511_QHF_FH_JSI10i_3	32.61	25.38			1.6786	1.3862	24.317	3	0	Median	1.6786	1.3862	NaN	1	0	Median	1.7422	2.0025	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2386	1.2648	NaN	1	0	Median	406620000	181280000	225340000	106250000	42956000	63292000	112750000	49521000	63232000	0	0	0	187620000	88806000	98813000	59346	5202	55920	361738;361739;361740	488318;488319	488318			2	
YLSLHDNK	1	Unmodified	988.49779	0.49779495	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.5	0.5		2	2									2	2	15.03	14.61	2	0.0012322	11765	160511_QHF_FH_JSI11i_3	86.095	54.806			3.6684	4.0175	198.31	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3.6684	4.0175	198.31	2	2	Median	23721000	9369100	14352000	0	0	0	0	0	0	0	0	0	23721000	9369100	14352000	59347	3159	55921	361741;361742;361743;361744	488320;488321;488322;488323	488320			4	
YLSLHDNKYIR	1	Acetyl (K)	1462.7569	0.75686319	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		56.274	46.546	2	0.049549	25196	160513_QHF_FH_JSI11Kac_6	59.757	41.446			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59348	3159	55922	361745	488324	488324			1	
YLSLLYPAR	0	Unmodified	1094.6124	0.61243078	5369	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		66.534	65.799	2	0.025517	58000	160511_QHF_FH_JSI9i_2	49.097	33.716			2.0614	1.8875	13.636	2	2	Median	1.9983	1.714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1264	2.0786	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24464000	8831000	15633000	10863000	4197000	6666400	0	0	0	13601000	4634100	8966900	0	0	0	59349	5369	55923	361746;361747	488325;488326	488325			2	
YLSNAYAR	0	Unmodified	956.47158	0.4715802	119	O00299	CLIC1	Chloride intracellular channel protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.71	2	4	3					4	4	4	4	5	4	20.344	16.009	2	2.8063E-05	13690	160511_QHF_FH_JSI12i_2	138.37	95.367			0.94059	0.89557	18.62	17	3	Median	0.98391	0.80807	23.768	4	0	Median	0.90436	1.0555	10.923	4	0	Median	0.93016	0.89457	18.836	5	2	Median	0.9132	0.97412	10.351	4	1	Median	7495900000	3621200000	3874700000	1329500000	523860000	805690000	1455100000	807760000	647370000	2914600000	1438800000	1475800000	1796600000	850770000	945800000	59350	119	55924	361748;361749;361750;361751;361752;361753;361754;361755;361756;361757;361758;361759;361760;361761;361762;361763;361764	488327;488328;488329;488330;488331;488332;488333;488334;488335;488336;488337;488338;488339;488340;488341;488342;488343;488344;488345;488346;488347;488348;488349	488330			23	
YLSPKYIK	2	Acetyl (K)	1052.5906	0.59063271	1917	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.1	0.759							3	5	4	2	3	3	4	52.074	41.92	2	0.00026211	21871	160513_QHF_FH_JSI12Kac_6	119.27	54.237			0.80868	0.79773	132.51	12	1	Median	0.94394	0.80497	4.7064	2	0	Median	0.89187	1.0657	3.7343	3	0	Plateau	0.47412	0.47012	30.119	3	0	Median	0.68049	0.75348	220.74	4	1	Median	880620000	524950000	355680000	85866000	41763000	44103000	180040000	94385000	85656000	414390000	291200000	123200000	200320000	97600000	102720000	59351	1917	55925	361765;361766;361767;361768;361769;361770;361771;361772;361773;361774;361775;361776	488350;488351;488352;488353;488354;488355;488356;488357;488358;488359;488360;488361;488362;488363;488364	488362	1922		15	
YLSQQWAK	1	Unmodified	1022.5185	0.5185304	1045	P13984	GTF2F2	General transcription factor IIF subunit 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								1	3	1	29.023	28.677	2	0.0015252	24650	160511_QHF_FH_JSI11i_3	102.71	84.728			2.1394	2.0938	23.96	4	4	Median	NaN	NaN	NaN	0	0	Median	1.4348	1.7746	NaN	1	1	Median	2.1394	2.0792	24.388	2	2	Median	2.7063	2.8206	NaN	1	1	Median	271490000	115240000	156250000	0	0	0	59482000	24069000	35413000	162850000	75865000	86982000	49161000	15309000	33852000	59352	1045	55926	361777;361778;361779;361780;361781	488365;488366;488367;488368;488369;488370;488371	488365			7	
YLSSANPNDNR	0	Unmodified	1249.5687	0.56872807	2421	Q13464	ROCK1	Rho-associated protein kinase 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	11.767	11.449	2	0.00047191	9140	160511_QHF_FH_JSI11i_1	79.148	64.991			0.30014	0.32415	163.96	2	1	Median	NaN	NaN	NaN	0	0	Median	0.91287	1.0334	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.098682	0.10168	NaN	1	1	Median	47102000	31125000	15977000	0	0	0	23031000	11350000	11681000	0	0	0	24071000	19775000	4296000	59353	2421	55927	361782;361783;361784	488372;488373;488374	488372			3	
YLSVQGQLFR	0	Unmodified	1209.6506	0.6506072	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	61.214	60.939	2	0.012816	52598	160511_QHF_FH_JSI12i_3	44.719	35.806			0.79465	0.80532	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79465	0.80532	NaN	1	0	Median	33302000	18099000	15203000	0	0	0	0	0	0	0	0	0	33302000	18099000	15203000	59354	5158	55928	361785	488375	488375			1	
YLSYLLYPLCVGGAVYSLLNIK	1	Unmodified	2518.3546	0.35455511	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	16	0									3	1	1		1	101.11	93.002	3	8.8901E-17	56163	160513_QHF_FH_JSI10Kac_6	122.77	115.41			1.0936	1.2922	40.138	3	0	Median	1.6508	1.4463	NaN	1	0	Median	1.0936	1.2922	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.65538	0.68686	NaN	1	0	Median	341470000	153980000	187500000	80306000	18248000	62058000	223790000	110970000	112820000	0	0	0	37379000	24764000	12615000	59355	4153	55929	361786;361787;361788	488376;488377;488378;488379	488379			4	
YLTAEAFGFK	1	Unmodified	1145.5757	0.57571092	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.16	6.94	5	4	1					5	4	4	4	5	6	71.372	66.442	2	2.3731E-14	59669	160511_QHF_FH_JSI10i_2	164.57	128.69			1.0254	1.0775	46.047	19	8	Median	1.1673	0.96924	24.372	4	2	Median	0.96348	1.1348	31.595	4	1	Median	0.93818	0.95618	51.074	5	2	Median	0.95893	1.0226	65.657	6	3	Median	7757900000	3729400000	4028500000	1304100000	546300000	757810000	1646800000	840890000	805880000	3023500000	1452400000	1571100000	1783500000	889750000	893760000	59356	2751	55930	361789;361790;361791;361792;361793;361794;361795;361796;361797;361798;361799;361800;361801;361802;361803;361804;361805;361806;361807	488380;488381;488382;488383;488384;488385;488386;488387;488388;488389;488390;488391;488392;488393;488394;488395;488396;488397;488398;488399;488400;488401;488402;488403;488404;488405;488406;488407;488408;488409;488410;488411;488412	488403			33	
YLTAEETDK	1	Unmodified	1068.4975	0.49752018	4853	Q9HCD5	NCOA5	Nuclear receptor coactivator 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	15.296	14.837	2	6.6655E-05	12393	160511_QHF_FH_JSI10i_1	96.668	71.774			0.45642	0.48446	40.671	4	2	Median	0.91838	0.74295	NaN	1	0	Median	0.53739	0.62324	NaN	1	0	Median	0.38765	0.37658	NaN	1	1	Median	0.30711	0.31456	NaN	1	1	Median	336380000	221760000	114620000	68976000	36757000	32219000	98174000	67328000	30846000	88013000	61710000	26303000	81221000	55966000	25256000	59357	4853	55931	361808;361809;361810;361811	488413;488414;488415;488416	488415			4	
YLTEHPDPNNENIVGYNNK	1	Unmodified	2230.0291	0.029074882	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	2	1	43.834	43.258	3	2.3962E-14	37000	160511_QHF_FH_JSI11i_2	151.95	146.37			1.0208	1.1244	21.441	5	1	Median	NaN	NaN	NaN	0	0	Median	0.88722	1.0709	6.8963	2	0	Median	1.097	1.0891	6.6427	2	0	Median	1.6852	1.7227	NaN	1	1	Median	490370000	202320000	288040000	0	0	0	192800000	78769000	114040000	271540000	117780000	153760000	26021000	5777900	20244000	59358	3101	55932	361812;361813;361814;361815;361816	488417;488418;488419;488420;488421	488420			5	
YLTEHPDPNNENIVGYNNKK	2	Unmodified	2358.124	0.1240379	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			5									2	3	37.343	37.261	3;4	1.5198E-06	31641	160511_QHF_FH_JSI12i_3	85.636	77.547			1.4548	1.4454	29.375	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2965	1.1894	2.1566	2	0	Median	1.8603	1.9302	15.501	2	2	Median	241580000	94739000	146840000	0	0	0	0	0	0	153620000	67162000	86461000	87957000	27576000	60380000	59359	3101	55933	361817;361818;361819;361820;361821	488422;488423;488424;488425;488426;488427;488428;488429	488429			8	
YLTGEKGVR	1	Acetyl (K)	1063.5662	0.56620887	4609	Q9GZT9	EGLN1	Egl nine homolog 1	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.775							3	4	3	2	4	1	3	31.925	22.803	2	0.00019988	12755	160513_QHF_FH_JSI12Kac_5	107.66	53.115			1.0159	1.189	136.76	8	1	Median	1.7344	1.4484	4.4319	2	0	Median	1.1661	1.3341	214.63	3	1	Median	0.7772	0.7665	NaN	1	0	Median	0.81322	0.8796	7.4696	2	0	Median	201680000	92886000	108800000	34505000	11879000	22627000	61548000	20987000	40561000	62630000	34605000	28026000	42998000	25415000	17583000	59360	4609	55934	361822;361823;361824;361825;361826;361827;361828;361829;361830;361831	488430;488431;488432;488433;488434;488435;488436;488437;488438	488436	3195		9	
YLTLNTESTR	0	Unmodified	1196.6037	0.60371659	846	P06276	BCHE	Cholinesterase	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		32.074	31.685	2	0.010051	26913	160511_QHF_FH_JSI11i_2	57.96	23.152			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	12804000	0	12804000	0	0	0	0	0	0	12804000	0	12804000	0	0	0	59361	846	55935	361832	488439	488439			1	
YLTMLQTQQK	1	Unmodified	1252.6486	0.64855829	2199	Q03001	DST	Dystonin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	43.312	41.931	2	0.011582	35889	160511_QHF_FH_JSI12i_2	46.462	16.652			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59362	2199	55936	361833	488440	488440			1	
YLTNAYSR	0	Unmodified	986.48214	0.48214489	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2	0		4								1	1	1	1	19.565	18.8	2	0.011039	15382	160511_QHF_FH_JSI12i_2	54.549	34.267			0.87419	0.90996	27.233	4	0	Median	1.6974	1.4367	NaN	1	0	Median	0.66232	0.80685	NaN	1	0	Median	1.0235	1.0237	NaN	1	0	Median	0.74667	0.80886	NaN	1	0	Median	319370000	162440000	156920000	70554000	28858000	41696000	62466000	33571000	28895000	103250000	52955000	50293000	83099000	47058000	36040000	59363	5711	55937	361834;361835;361836;361837	488441;488442	488441			2	
YLTNAYSRDEFTNTCPSDK	1	Unmodified	2280.9957	0.99572584	5711	Q9Y696	CLIC4	Chloride intracellular channel protein 4	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		42.343	42.343	3	0.00019404	37265	160511_QHF_FH_JSI11i_3	67.43	62.101			1.0504	0.99709	36.69	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0504	0.99709	36.69	2	2	Median	NaN	NaN	NaN	0	0	Median	49327000	26984000	22343000	0	0	0	0	0	0	49327000	26984000	22343000	0	0	0	59364	5711	55938	361838;361839	488443;488444	488443			2	
YLTNEREPYAPGTEGNVK	1	Unmodified	2036.9803	0.98033378	711	O95625	ZBTB11	Zinc finger and BTB domain-containing protein 11	yes	yes	0	0	0	1			By MS/MS		3	0			2									2		34.167	34.167	3	0.00015296	29820	160511_QHF_FH_JSI11i_3	79.837	69.878			0.84844	0.79298	64.755	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84844	0.79298	64.755	2	2	Median	NaN	NaN	NaN	0	0	Median	57707000	31903000	25804000	0	0	0	0	0	0	57707000	31903000	25804000	0	0	0	59365	711	55939	361840;361841	488445;488446	488446			2	
YLTNQKNSNSK	2	Acetyl (K)	1337.6575	0.65754307	4823	Q9HAF1	MEAF6	Chromatin modification-related protein MEAF6	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.8	0.95						7	7		2		5	6	5	16.249	8.6198	2;3	0.0001887	6505	160513_QHF_FH_JSI10Kac_4	88.155	75.773			0.72338	0.86772	358.04	6	4	Median	NaN	NaN	NaN	0	0	Median	0.082951	0.099614	237.86	3	2	Plateau	1.5933	1.5718	NaN	1	0	Median	1.7198	1.8857	680.1	2	2	Median	411960000	246940000	165020000	0	0	0	139870000	112990000	26878000	183380000	94001000	89382000	88701000	39944000	48757000	59366	4823	55940	361842;361843;361844;361845;361846;361847;361848;361849;361850;361851;361852;361853;361854;361855;361856;361857	488447;488448;488449;488450;488451;488452;488453;488454;488455;488456;488457;488458;488459;488460;488461;488462	488448	3240;3241		16	
YLTNQKNSNSKNDR	2	2 Acetyl (K)	1764.8391	0.83908927	4823	Q9HAF1	MEAF6	Chromatin modification-related protein MEAF6	yes	yes	2	0	0	2		By MS/MS	By MS/MS	By MS/MS	13.6	0.49						4	6				3	3	4	24.721	16.781	2;3	2.4414E-44	10349	160513_QHF_FH_JSI10Kac_4	191.05	180.82			0.92205	1.0455	17.154	10	0	Median	NaN	NaN	NaN	0	0	Median	0.84996	1.0151	2.5586	3	0	Plateau	1.1022	1.0958	20.605	3	0	Plateau	0.89346	0.97537	14.026	4	0	Median	134050000	61521000	72527000	0	0	0	36730000	15979000	20751000	39636000	18186000	21450000	57682000	27356000	30326000	59367	4823	55941	361858;361859;361860;361861;361862;361863;361864;361865;361866;361867	488463;488464;488465;488466;488467;488468;488469;488470;488471;488472;488473;488474;488475;488476;488477	488465	3240;3241		15	
YLTNQKNSNSKNDRR	2	2 Acetyl (K)	1920.9402	0.9402003	4823	Q9HAF1	MEAF6	Chromatin modification-related protein MEAF6	yes	yes	2	0	0	3	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	0.686							4	9	4	2	6	4	5	20.929	12.191	3	0.00071849	7775	160513_QHF_FH_JSI11Kac_6	83.729	73.533			0.9841	0.99666	13.204	17	0	Median	1.2012	1.011	3.6116	2	0	Median	0.82197	0.96367	18.427	6	0	Median	1.1237	1.085	11.503	4	0	Median	0.87512	0.94026	9.181	5	0	Median	1637800000	835720000	802090000	260790000	112620000	148170000	618120000	327040000	291080000	320240000	150100000	170140000	438670000	245970000	192700000	59368	4823	55942	361868;361869;361870;361871;361872;361873;361874;361875;361876;361877;361878;361879;361880;361881;361882;361883;361884	488478;488479;488480;488481;488482;488483;488484;488485;488486;488487	488479	3240;3241		10	
YLTQVATGQPHEGSSYSSR	0	Unmodified	2066.9657	0.96574634	5178	Q9P086	MED11	Mediator of RNA polymerase II transcription subunit 11	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	28.504	28.482	3	4.7671E-05	25024	160511_QHF_FH_JSI10i_2	61.102	55.56			0.89745	0.8917	38.344	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2452	1.1694	NaN	1	1	Median	0.64683	0.67993	NaN	1	1	Median	42804000	18085000	24718000	0	0	0	0	0	0	29093000	8002300	21091000	13711000	10083000	3627500	59369	5178	55943	361885;361886;361887	488488;488489;488490	488489			3	
YLTSNVAYGSTGIR	0	Unmodified	1500.7573	0.75725712	4801	Q9H999;Q9BZ23	PANK3;PANK2	Pantothenate kinase 3;Pantothenate kinase 2, mitochondrial	yes	no	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.472	45.522	2	0.00017477	38948	160511_QHF_FH_JSI12i_2	109.24	88.932			0.46007	0.48419	88.769	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25907	0.25847	NaN	1	1	Median	0.81702	0.90703	NaN	1	1	Median	81460000	58907000	22552000	0	0	0	0	0	0	60958000	45583000	15376000	20501000	13324000	7176700	59370	4801	55944	361888;361889	488491;488492	488491			2	
YLTTAVITNK	1	Unmodified	1122.6285	0.62847478	1909	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.48	6.47	4	7	2			1	3	3	3	4	7	7	5	46.132	41.363	2	3.617E-14	22734	160513_QHF_FH_JSI10Kac_6	158.37	137.81			0.46785	0.4783	92.071	21	17	Median	0.3143	0.26073	139.02	4	1	Median	0.36583	0.43135	72.788	6	6	Median	0.39288	0.40406	84.727	7	6	Median	0.53948	0.59519	63.207	4	4	Median	4593300000	2503900000	2089400000	569030000	310520000	258510000	1056900000	648170000	408720000	1697200000	847290000	849890000	1270200000	697930000	572290000	59371	1909	55945	361890;361891;361892;361893;361894;361895;361896;361897;361898;361899;361900;361901;361902;361903;361904;361905;361906;361907;361908;361909;361910;361911;361912	488493;488494;488495;488496;488497;488498;488499;488500;488501;488502;488503;488504;488505;488506;488507;488508;488509;488510;488511;488512;488513;488514	488514			22	
YLTVAAVFR	0	Unmodified	1038.5862	0.58621603	2075;872;811	P07437;P68371;P04350	TUBB;TUBB4B;TUBB4A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.47		4	4				1	3	7	5	5	5	4	72.967	67.312	2	1.379E-16	36554	160513_QHF_FH_JSI10Kac_6	168.23	110.68			0.89706	0.8977	13.508	19	0	Median	1.0704	0.93058	10.036	5	0	Median	0.73776	0.82353	12.213	5	0	Median	0.97417	0.95601	18.335	5	0	Median	0.83144	0.85003	10.701	4	0	Median	39151000000	18949000000	20202000000	7893000000	3283000000	4610000000	10302000000	5713400000	4589000000	9604700000	4484900000	5119800000	11351000000	5467600000	5883600000	59372	872;2075;811	55946	361913;361914;361915;361916;361917;361918;361919;361920;361921;361922;361923;361924;361925;361926;361927;361928;361929;361930;361931	488515;488516;488517;488518;488519;488520;488521;488522;488523;488524;488525;488526;488527;488528;488529;488530;488531;488532;488533;488534;488535;488536;488537;488538;488539;488540;488541;488542;488543;488544;488545;488546;488547;488548;488549;488550;488551;488552;488553	488550			39	
YLTVATVFR	0	Unmodified	1068.5968	0.59678072	4440;2430	Q9BUF5;Q13509	TUBB6;TUBB3	Tubulin beta-6 chain;Tubulin beta-3 chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.59	6.71	3	4	3					3	4	5	5	4	3	69.232	64.804	2	7.2619E-11	35558	160513_QHF_FH_JSI10Kac_6	149.65	96.487			1.0364	1.0253	45.483	17	0	Median	1.2009	1.0253	54.873	5	0	Median	0.7492	0.89523	43.478	5	0	Median	1.0248	1.0243	61.533	4	0	Median	1.1527	1.1674	20.455	3	0	Plateau	4260700000	1986500000	2274200000	978450000	331830000	646620000	1307500000	675240000	632260000	780140000	379420000	400730000	1194600000	600040000	594590000	59373	4440;2430	55947	361932;361933;361934;361935;361936;361937;361938;361939;361940;361941;361942;361943;361944;361945;361946;361947;361948	488554;488555;488556;488557;488558;488559;488560;488561;488562;488563;488564;488565;488566;488567;488568;488569;488570;488571;488572;488573;488574	488574			21	
YLTVQNTVR	0	Unmodified	1092.5928	0.59275797	5552	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		28.786	28.417	2	0.002875	24003	160511_QHF_FH_JSI11i_2	72.607	58.604			1.2001	1.2161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2001	1.2161	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	270330000	137110000	133220000	0	0	0	0	0	0	270330000	137110000	133220000	0	0	0	59374	5552	55948	361949	488575	488575			1	
YLVFFFYPLDFTFVCPTEIIAFGDRLEEFR	0	Unmodified	3750.8473	0.84726468	2364	Q13162	PRDX4	Peroxiredoxin-4	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			103.24	97.52	3	1.7635E-106	57732	160513_QHF_FH_JSI10Kac_6	226.4	213.15			1.2847	1.5373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2847	1.5373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	431640000	208040000	223600000	0	0	0	431640000	208040000	223600000	0	0	0	0	0	0	59375	2364	55949	361950	488576;488577	488577			2	
YLVGGLSGVDEGLSSTENLK	1	Unmodified	2037.0266	0.026615266	5106	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		5										2	3	79.428	78.432	2;3	2.49E-11	69020	160511_QHF_FH_JSI11i_2	108.17	84.794			1.3709	1.4521	32.34	3	2	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2655	1.2408	NaN	1	1	Median	1.0139	1.064	43.98	2	1	Median	32000000	13905000	18094000	0	0	0	0	0	0	11347000	4095800	7251400	20652000	9809700	10843000	59376	5106	55950	361951;361952;361953;361954;361955	488578;488579;488580;488581;488582	488582			5	
YLVHLADTIYR	0	Unmodified	1362.7296	0.7295858	5656	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.41	59.41	2	0.014388	52753	160511_QHF_FH_JSI11i_3	45.161	28.49			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59377	5656	55951	361956	488583	488583			1	
YLVIDEAHR	0	Unmodified	1114.5771	0.57710791	403	O60264;P28370	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	1	1	3	32.392	31.381	2;3	1.0483E-06	26643	160511_QHF_FH_JSI12i_2	105.52	86.775			0.84395	1.0759	21.64	6	2	Linear	0.84395	0.71584	12.69	2	1	Median	0.93702	1.1421	NaN	1	0	Median	1.0332	1.0415	NaN	1	0	Median	0.71384	0.78287	13.038	2	1	Median	638230000	322610000	315620000	108310000	55380000	52934000	138430000	84925000	53509000	234060000	104890000	129170000	157430000	77415000	80013000	59378	403	55952	361957;361958;361959;361960;361961;361962;361963	488584;488585;488586;488587;488588;488589;488590;488591	488584			7	
YLVIQGDER	0	Unmodified	1091.5611	0.56112349	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	2	0		3								1	1		1	36.183	35.066	2	0.0013529	29772	160511_QHF_FH_JSI12i_2	69.423	43.597			0.35051	0.33939	57.077	3	0	Plateau	0.33662	0.29395	NaN	1	0	Median	0.49323	0.59742	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.80206	0.90929	NaN	1	0	Median	164740000	110380000	54353000	57352000	39150000	18202000	55484000	40753000	14731000	0	0	0	51900000	30480000	21420000	59379	774	55953	361964;361965;361966	488592;488593;488594;488595	488592			4	
YLVLANMLMK	1	Oxidation (M)	1210.6454	0.64538717	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.5	6.5			5						5	3	1	3	3	81.395	76.368	2	0.00052048	70531	160511_QHF_FH_JSI12i_3	98.523	83.854			0.87369	0.82103	44.791	10	6	Median	1.6267	1.3914	53.852	3	3	Median	1.5332	1.7708	NaN	1	1	Median	1.2707	1.2231	41.127	3	1	Plateau	0.76221	0.75646	5.5362	3	1	Plateau	545200000	291350000	253840000	175130000	84234000	90894000	41687000	19906000	21781000	158340000	87500000	70836000	170040000	99714000	70330000	59380	1943	55954	361967;361968;361969;361970;361971;361972;361973;361974;361975;361976	488596;488597;488598;488599;488600;488601;488602;488603;488604;488605	488603		1611;1612	8	
YLVLANMLMK	1	Unmodified	1194.6505	0.65047255	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.58	6.44		4	8						7	5	5	5	4	90.963	87.662	2	6.5417E-14	43255	160513_QHF_FH_JSI9Kac_6	154.31	100.15			0.80338	0.69289	112.71	19	19	Median	0.80558	0.69289	130.24	5	5	Median	0.80338	0.95866	123.46	5	5	Median	0.6836	0.65059	111.13	5	5	Median	0.73355	0.79783	126.94	4	4	Median	4653900000	2532100000	2121800000	1030400000	564590000	465830000	1093700000	579170000	514580000	1423800000	752720000	671050000	1106000000	635650000	470320000	59381	1943	55954	361977;361978;361979;361980;361981;361982;361983;361984;361985;361986;361987;361988;361989;361990;361991;361992;361993;361994;361995	488606;488607;488608;488609;488610;488611;488612;488613;488614;488615;488616;488617;488618;488619;488620;488621;488622;488623;488624;488625;488626;488627;488628;488629;488630;488631;488632	488625			27	
YLVLANMLMK	1	2 Oxidation (M)	1226.6403	0.64030179	1943	P61201	COPS2	COP9 signalosome complex subunit 2	yes	yes	0	0	2	0	By MS/MS	By MS/MS			15.7	0.471								1	2	2	1			67.426	58.284	2	0.0010251	30457	160513_QHF_FH_JSI9Kac_5	68.422	37.851			1.2143	0.99032	32.684	3	1	Median	1.5265	1.2469	32.577	2	0	Median	0.72261	0.83446	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34991000	16477000	18513000	21326000	9119600	12207000	13665000	7357900	6306900	0	0	0	0	0	0	59382	1943	55954	361996;361997;361998	488633;488634;488635	488633		1611;1612	3	
YLVLDEADR	0	Unmodified	1092.5451	0.54513908	154	O00571;O15523;Q9NQI0	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.73	3.62	5	4	1				1			3	2	2	4	45.397	44.47	2	7.595E-07	38343	160511_QHF_FH_JSI11i_2	136.8	118.07			0.95575	0.88701	23.015	10	3	Median	1.0571	0.86014	8.8294	3	0	Median	0.60885	0.72214	NaN	1	0	Median	0.94294	0.93655	3.3354	2	0	Median	0.8005	0.88343	36.701	4	3	Median	3251100000	1613600000	1637400000	611270000	246570000	364700000	475860000	287420000	188440000	1085400000	496680000	588730000	1078500000	582950000	495570000	59383	154	55955	361999;362000;362001;362002;362003;362004;362005;362006;362007;362008;362009	488636;488637;488638;488639;488640;488641;488642;488643;488644;488645;488646;488647;488648	488648			13	
YLVLFFYPLDFTFVCPTEIVAFSDK	1	Unmodified	3030.5129	0.51290624	1338	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	11.3	6.6		1							2		2		1	103.57	98.503	2;3	4.4261E-150	57586	160513_QHF_FH_JSI10Kac_6	270.84	227.82			0.83247	0.97804	28.138	2	0	Median	NaN	NaN	NaN	0	0	Median	0.83247	0.97804	28.138	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	196660000	91152000	105500000	0	0	0	194480000	91152000	103320000	0	0	0	2180100	0	2180100	59384	1338	55956	362010;362011;362012	488649;488650;488651;488652	488651			4	
YLVMDEADR	0	Unmodified	1110.5016	0.5015597	4640	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		36.921	36.487	2	0.0090738	31124	160511_QHF_FH_JSI11i_2	60.59	41.113			0.37903	0.38189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.37903	0.38189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24129000	16131000	7997400	0	0	0	0	0	0	24129000	16131000	7997400	0	0	0	59385	4640	55957	362013	488653	488653			1	
YLVNPEGQVVK	1	Unmodified	1244.6765	0.6764876	3733	Q8TED1	GPX8	Probable glutathione peroxidase 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.44	5.12	2	5					2			2	1	2	4	48.692	45.502	2	5.5607E-05	40009	160511_QHF_FH_JSI10i_2	102.62	88.415			1.1456	0.98171	81.255	9	7	Median	1.0117	0.85319	19.843	2	0	Median	1.52	1.8414	NaN	1	1	Median	1.9471	1.9416	12.513	2	2	Median	0.66984	0.72773	113.95	4	4	Median	822950000	355950000	467000000	247230000	102740000	144480000	62791000	28241000	34549000	109150000	43355000	65794000	403780000	181610000	222170000	59386	3733	55958	362014;362015;362016;362017;362018;362019;362020;362021;362022	488654;488655;488656;488657;488658;488659;488660;488661	488661			7	
YLVPQAR	0	Unmodified	845.47594	0.4759373	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	24.285	23.327	2	0.011095	19522	160511_QHF_FH_JSI12i_2	71.995	44.678			1.0093	0.96638	4.2195	5	0	Median	1.1348	0.94314	3.4421	2	0	Median	0.79313	0.98513	NaN	1	0	Median	1.0093	1.031	NaN	1	0	Median	0.84614	0.95087	NaN	1	0	Median	1348300000	717180000	631110000	245530000	107160000	138370000	288320000	172730000	115580000	470120000	242650000	227470000	344330000	194640000	149690000	59387	1459	55959	362023;362024;362025;362026;362027	488662;488663;488664;488665;488666;488667	488663			6	
YLVPSDITVAQFMWIIR	0	Unmodified	2051.0914	0.09140455	1913	P60520	GABARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				98.678	89.544	2	0.0021944	51525	160513_QHF_FH_JSI9Kac_6	142.83	99.202			1.819	1.5572	NaN	1	1	Median	1.819	1.5572	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44516000	19161000	25355000	44516000	19161000	25355000	0	0	0	0	0	0	0	0	0	59388	1913	55960	362028	488668	488668			1	
YLVPSDLTVGQFYFLIR	0	Unmodified	2030.0877	0.08769938	649	O95166;Q9H0R8	GABARAP;GABARAPL1	Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	2	2	1	1	97.172	89.089	2;3	1.1571E-96	53032	160513_QHF_FH_JSI10Kac_6	240.6	203.17			1.1519	1.1093	22.515	6	0	Median	1.4955	1.2874	32.042	2	0	Median	0.7738	0.90805	11.384	2	0	Median	1.2907	1.2131	NaN	1	0	Median	1.1302	1.1988	NaN	1	0	Median	1455900000	661310000	794640000	442190000	167630000	274560000	480170000	251650000	228520000	357300000	161370000	195930000	176280000	80661000	95621000	59389	649	55961	362029;362030;362031;362032;362033;362034	488669;488670;488671;488672;488673;488674;488675;488676	488676			7	
YLVPSDLTVGQFYFLIRK	1	Unmodified	2158.1827	0.1826624	649	O95166;Q9H0R8	GABARAP;GABARAPL1	Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1	yes	no	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	93.109	86.315	3	4.2369E-17	47719	160513_QHF_FH_JSI9Kac_6	133.86	109.82			1.3768	1.5775	10.993	3	2	Plateau	1.5234	1.3022	NaN	1	0	Median	1.2402	1.4445	13.04	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	426270000	187350000	238920000	72220000	31815000	40406000	354050000	155540000	198520000	0	0	0	0	0	0	59390	649	55962	362035;362036;362037;362038	488677;488678;488679;488680	488677			4	
YLVQDTDEFILPTGANK	1	Unmodified	1922.9626	0.96255845	219	O14925;Q5SRD1	TIMM23;TIMM23B	Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	2	3	3	80.661	80.198	2;3	1.9816E-12	72888	160511_QHF_FH_JSI11i_1	182.57	172.78			0.87272	0.85115	20.152	10	8	Median	0.84631	0.69291	18.035	2	1	Median	0.69698	0.80606	14.197	2	1	Median	0.90138	0.87928	16.102	3	3	Median	0.93253	0.9705	22.113	3	3	Median	1139400000	610200000	529170000	183940000	86401000	97536000	219580000	132840000	86738000	347370000	192670000	154690000	388490000	198280000	190210000	59391	219	55963	362039;362040;362041;362042;362043;362044;362045;362046;362047;362048	488681;488682;488683;488684;488685;488686;488687;488688;488689;488690;488691;488692;488693;488694;488695;488696;488697	488681			17	
YLVSLGCIK	1	Unmodified	1051.5736	0.57360243	439	O60684	KPNA6	Importin subunit alpha-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	2	1	65.438	62.831	2	0.0017342	33967	160513_QHF_FH_JSI11Kac_6	83.265	56.663			1.05	1.0429	20.155	5	0	Median	1.1502	1.0028	NaN	1	0	Median	0.8505	1.0463	NaN	1	0	Median	1.025	1.0078	4.8379	2	0	Median	1.4542	1.5868	NaN	1	0	Median	177180000	82105000	95073000	19141000	7366300	11775000	34031000	17142000	16889000	85243000	40941000	44302000	38763000	16656000	22107000	59392	439	55964	362049;362050;362051;362052;362053;362054	488698;488699;488700;488701;488702;488703;488704;488705;488706	488700			9	
YLVTFSPLMDTQDDPQAIIIWDILTGHK	1	Unmodified	3229.6369	0.63693756	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									6	2	2		2	100.12	92.01	3;4	0	50030	160513_QHF_FH_JSI12Kac_6	365.82	341.9			1.2565	1.3466	11.784	6	0	Median	1.7534	1.528	2.1729	2	0	Median	1.0266	1.2253	2.5629	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2565	1.3219	13.407	2	0	Median	2860500000	1319800000	1540600000	596780000	166850000	429930000	1270900000	716940000	553980000	0	0	0	992750000	436030000	556730000	59393	1867	55965	362055;362056;362057;362058;362059;362060	488707;488708;488709;488710;488711;488712;488713;488714;488715;488716	488712			10	
YLVTFSPLMDTQDDPQAIIIWDILTGHK	1	Oxidation (M)	3245.6319	0.63185218	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	99.587	90.144	3	1.5496E-155	49598	160513_QHF_FH_JSI12Kac_6	262.79	245.99			1.2201	1.2865	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2201	1.2865	NaN	1	0	Median	185580000	90089000	95492000	0	0	0	0	0	0	0	0	0	185580000	90089000	95492000	59394	1867	55965	362061	488717;488718	488718		1555	2	
YLVVLYYNANR	0	Unmodified	1386.7296	0.7295858	5574	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	2.01				2	1			1	8	2	4	4	2	77.343	68.914	2;3	4.0653E-58	37792	160513_QHF_FH_JSI10Kac_6	221.25	167.1			0.898	0.98217	39.094	10	4	Median	1.201	1.0235	NaN	1	0	Median	0.80974	0.95829	33.197	3	2	Plateau	0.78167	0.75817	24.595	4	1	Median	1.247	1.3387	65.137	2	1	Median	2902400000	1315100000	1587300000	496660000	230790000	265870000	1486900000	649950000	836910000	458830000	186050000	272780000	460040000	248320000	211720000	59395	5574	55966	362062;362063;362064;362065;362066;362067;362068;362069;362070;362071;362072;362073	488719;488720;488721;488722;488723;488724;488725;488726;488727;488728;488729;488730;488731;488732;488733;488734;488735;488736	488732			18	
YLVVYNPLEQDR	0	Unmodified	1507.7671	0.76709352	2755	Q16706	MAN2A1	Alpha-mannosidase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	75.546	74.795	2	0.00032	65617	160511_QHF_FH_JSI11i_2	74.162	43.598			0.29981	0.35689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.29981	0.35689	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	15339000	12370000	2969600	0	0	0	15339000	12370000	2969600	0	0	0	0	0	0	59396	2755	55967	362074;362075;362076	488737;488738;488739	488738			3	
YLVYAILWSLSGDSR	0	Unmodified	1741.9039	0.90392136	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0			By matching	By MS/MS	16	0									2			1	1	97.326	87.901	2	0.021081	48200	160513_QHF_FH_JSI12Kac_6	61.435	46.169			1.1728	1.1846	10.721	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3317	1.2779	NaN	1	0	Median	1.0329	1.0982	NaN	1	0	Median	179400000	62809000	116590000	0	0	0	0	0	0	113630000	40524000	73105000	65774000	22285000	43489000	59397	2517	55968	362077;362078	488740	488740			0	
YLWESPSLAIK	1	Unmodified	1305.6969	0.69688869	648	O95163	IKBKAP	Elongator complex protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	76.209	75.337	2	9.5965E-05	66221	160511_QHF_FH_JSI11i_2	97.431	85.205			0.86812	0.90321	11.367	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74257	0.90321	NaN	1	0	Median	0.86812	0.86071	NaN	1	0	Median	0.96051	1.0688	NaN	1	0	Median	209540000	109630000	99915000	0	0	0	58002000	29514000	28489000	87620000	48835000	38785000	63919000	31277000	32642000	59398	648	55969	362079;362080;362081	488741;488742;488743	488742			0	
YLWNNIK	1	Unmodified	949.50215	0.50215205	813	P04632;Q96L46	CAPNS1;CAPNS2	Calpain small subunit 1;Calpain small subunit 2	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	46.896	45.975	2	0.0080097	40131	160511_QHF_FH_JSI11i_3	85.306	71.635			0.83427	0.892	30.28	6	1	Median	0.82436	0.68019	42.891	2	1	Median	0.82084	0.99452	NaN	1	0	Median	1.0591	1.0381	26.007	2	0	Median	0.70074	0.80199	NaN	1	0	Median	1262400000	624450000	637910000	203560000	92652000	110910000	241680000	128670000	113010000	517450000	225100000	292340000	299670000	178020000	121650000	59399	813	55970	362082;362083;362084;362085;362086;362087	488744;488745;488746;488747;488748;488749	488744			6	
YLYAFSIVPMK	1	Unmodified	1330.6995	0.69953123	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.36	6.97		6							5	3	2	3	3	90.341	86.225	2;3	1.4612E-14	43342	160513_QHF_FH_JSI11Kac_6	174.02	160.41			0.98291	0.99068	79.877	11	5	Median	1.5734	1.3743	74.034	3	2	Median	1.0191	1.232	47.099	2	0	Median	0.90814	0.85256	69.544	3	1	Median	0.92996	0.99068	130.07	3	2	Median	1378900000	644050000	734850000	355980000	129270000	226710000	362790000	198700000	164080000	452820000	226900000	225910000	207320000	89175000	118150000	59400	3032	55971	362088;362089;362090;362091;362092;362093;362094;362095;362096;362097;362098	488750;488751;488752;488753;488754;488755;488756;488757;488758;488759;488760;488761;488762;488763;488764	488752			15	
YLYAFSIVPMK	1	Oxidation (M)	1346.6944	0.69444585	3032	Q69YN2	CWF19L1	CWF19-like protein 1	yes	yes	0	0	1	0	By MS/MS		By MS/MS	By MS/MS	15.8	0.433								1	3	2		1	1	82.621	73.162	2	5.6324E-10	38769	160513_QHF_FH_JSI12Kac_6	130.96	78.968			0.73383	0.68418	26.154	4	0	Median	1.0457	0.89373	19.657	2	0	Median	NaN	NaN	NaN	0	0	Median	0.59937	0.58714	NaN	1	0	Median	0.57475	0.60187	NaN	1	0	Median	138580000	76307000	62278000	48028000	25015000	23013000	0	0	0	41715000	22649000	19066000	48842000	28643000	20199000	59401	3032	55971	362099;362100;362101;362102	488765;488766;488767;488768;488769	488768		2182	5	
YLYEEYLQAFTYYK	1	Unmodified	1892.8873	0.88726824	1304	P28288	ABCD3	ATP-binding cassette sub-family D member 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			90.306	83.088	2	1.1276E-55	47887	160513_QHF_FH_JSI10Kac_6	210.91	173.36			0.84058	0.83706	10.392	2	0	Median	1.0645	0.90089	NaN	1	0	Median	0.66373	0.77776	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	178620000	92584000	86031000	60428000	28871000	31557000	118190000	63712000	54474000	0	0	0	0	0	0	59402	1304	55972	362103;362104	488770;488771;488772;488773	488772			4	
YLYEIAR	0	Unmodified	926.48617	0.48616764	50	CON__P02769;CON__P02768-1;P02768	ALB	Serum albumin	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		5.5	6.06		3							1	1	1	2		43.054	40.01	2	0.005779	35103	160511_QHF_FH_JSI9i_2	81.381	0		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59403	50	55973	362105;362106;362107;362108	488774;488775;488776;488777	488775			4	
YLYFLYLK	1	Unmodified	1121.6161	0.61611918	4783	Q9H8H0	NOL11	Nucleolar protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									4	2	1	1		86.956	79.073	2	0.00075471	45174	160513_QHF_FH_JSI10Kac_6	99.919	48.065			4.6177	5.4972	43.931	3	3	Plateau	2.7482	2.3363	NaN	1	1	Median	4.6177	5.5129	NaN	1	1	Median	4.4119	4.2193	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1586200000	168010000	1418200000	406990000	43448000	363550000	705450000	66271000	639170000	473780000	58288000	415490000	0	0	0	59404	4783	55974	362109;362110;362111;362112	488778;488779;488780;488781	488781			4	
YLYHGNTNPELAFESAK	1	Unmodified	1952.9268	0.92684164	3862	Q92621	NUP205	Nuclear pore complex protein Nup205	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		5	5							1	1	4	4	55.993	55.367	2;3	1.3012E-40	48900	160511_QHF_FH_JSI11i_3	166.6	149.39			1.1549	1.1868	31.051	8	4	Median	0.83434	0.70804	NaN	1	1	Median	0.74179	0.91082	NaN	1	0	Median	1.2932	1.24	23.907	3	2	Median	1.1515	1.201	27.302	3	1	Median	1146800000	564130000	582650000	116430000	67378000	49049000	222940000	116900000	106040000	458120000	227840000	230280000	349290000	152010000	197280000	59405	3862	55975	362113;362114;362115;362116;362117;362118;362119;362120;362121;362122	488782;488783;488784;488785;488786;488787;488788;488789;488790;488791	488784			10	
YLYLTPQDYK	1	Unmodified	1302.6496	0.64960415	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.33	0.471	2	1								1			2	59.118	57.785	2	0.0026513	49551	160511_QHF_FH_JSI12i_2	72.23	52.468			0.53937	0.5815	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.53937	0.5815	NaN	1	0	Median	43782000	28660000	15122000	0	0	0	0	0	0	0	0	0	43782000	28660000	15122000	59406	2348	55976	362123;362124;362125	488792;488793;488794	488792			3	
YLYLTPQDYKR	1	Acetyl (K)	1500.7613	0.76127986	2348	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		73.744	63.014	2	0.036455	33608	160513_QHF_FH_JSI11Kac_5	55.567	36.296			0.45588	0.45227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45588	0.45227	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3000700	2333100	667620	0	0	0	0	0	0	3000700	2333100	667620	0	0	0	59407	2348	55977	362126	488795	488795			1	
YLYPNIDK	1	Unmodified	1024.5229	0.52294707	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	42.535	41.568	2	0.014809	36304	160511_QHF_FH_JSI9i_2	60.478	17.563			0.78667	0.84101	25.901	4	1	Median	0.71955	0.60557	NaN	1	1	Median	0.85605	1.0621	NaN	1	0	Median	0.72898	0.72859	NaN	1	0	Median	0.84891	0.97078	NaN	1	0	Median	355640000	211580000	144060000	75417000	39043000	36374000	68957000	49907000	19050000	143840000	98688000	45147000	67428000	23938000	43490000	59408	1528	55978	362127;362128;362129;362130;362131	488796;488797;488798	488797			3	
YLYSSEDYIK	1	Unmodified	1279.5972	0.59723423	2370	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	48.652	47.82	2	6.2346E-10	43231	160511_QHF_FH_JSI11i_1	138.54	118.02			0.84266	0.89716	18.134	8	2	Median	0.78772	0.65651	13.299	2	1	Median	0.84101	1.0042	0.67275	2	0	Median	0.90216	0.89716	3.1652	2	0	Median	0.78012	0.84891	13.176	2	1	Median	2214500000	1102100000	1112400000	490720000	248890000	241830000	595780000	319250000	276520000	648440000	295240000	353190000	479540000	238720000	240820000	59409	2370	55979	362132;362133;362134;362135;362136;362137;362138;362139;362140	488799;488800;488801;488802;488803;488804;488805;488806;488807;488808;488809;488810;488811;488812;488813;488814;488815;488816	488800			18	
YLYTLVITDK	1	Unmodified	1227.6751	0.67509062	2056	P63173	RPL38	60S ribosomal protein L38	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	5.86	3	5	3			1	2	21	5	12	13	7	8	75.405	67.883	2	2.0684E-24	35075	160513_QHF_FH_JSI9Kac_5	177.36	154.53			1.0415	0.99013	27.923	37	10	Median	1.0812	0.91944	14.942	11	5	Median	0.87373	1.0376	14.892	12	1	Median	1.1878	1.1362	54.633	7	3	Median	1.0415	1.116	25.855	7	1	Median	11749000000	5450400000	6298200000	2049500000	969470000	1080000000	3149000000	1491200000	1657800000	4259600000	1889300000	2370300000	2290400000	1100300000	1190000000	59410	2056	55980	362141;362142;362143;362144;362145;362146;362147;362148;362149;362150;362151;362152;362153;362154;362155;362156;362157;362158;362159;362160;362161;362162;362163;362164;362165;362166;362167;362168;362169;362170;362171;362172;362173;362174;362175;362176;362177;362178;362179;362180	488817;488818;488819;488820;488821;488822;488823;488824;488825;488826;488827;488828;488829;488830;488831;488832;488833;488834;488835;488836;488837;488838;488839;488840;488841;488842;488843;488844;488845;488846;488847;488848;488849;488850;488851;488852;488853;488854;488855;488856;488857;488858;488859;488860;488861;488862;488863;488864;488865;488866;488867;488868;488869;488870;488871;488872;488873;488874;488875;488876;488877;488878;488879;488880;488881;488882;488883;488884;488885;488886;488887;488888;488889;488890;488891;488892	488827			76	
YLYYTGR	0	Unmodified	934.45487	0.45486751	313	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	38.097	29.011	2	7.2943E-05	16324	160513_QHF_FH_JSI10Kac_6	122.98	111.07			0.96732	1.0031	6.3492	4	0	Median	1.1586	0.98877	NaN	1	0	Median	0.86545	1.0185	NaN	1	0	Median	1.0812	1.0175	NaN	1	0	Median	0.8196	0.89061	NaN	1	0	Median	121320000	58144000	63181000	21527000	8260700	13266000	48749000	23854000	24895000	28887000	14998000	13889000	22162000	11031000	11131000	59411	313	55981	362181;362182;362183;362184	488893;488894;488895;488896;488897;488898	488898			6	
YMACCLLYR	0	Unmodified	1248.5454	0.54535555	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.86	6.79	2	4	2					2	4	3	4	4	3	57.524	53.002	2	2.4683E-24	27583	160513_QHF_FH_JSI12Kac_6	187.14	168.7			1.0645	0.99786	25.342	14	0	Median	1.1818	0.99453	22.219	3	0	Median	0.79597	0.94541	6.7341	4	0	Median	0.95156	0.93508	23.558	4	0	Median	1.2331	1.3268	25.909	3	0	Median	6992400000	3542300000	3450000000	687870000	327130000	360740000	2022200000	1195600000	826690000	2561900000	1200200000	1361700000	1720300000	819450000	900890000	59412	27;2073;2074;4359	55982	362185;362186;362187;362188;362189;362190;362191;362192;362193;362194;362195;362196;362197;362198	488899;488900;488901;488902;488903;488904;488905;488906;488907;488908;488909;488910;488911;488912;488913;488914;488915;488916;488917;488918;488919	488917			21	
YMACCLLYR	0	Oxidation (M)	1264.5403	0.54027017	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	5.72		1	1					2	4	2	2	1	3	53.384	44.824	2	3.4176E-07	23335	160513_QHF_FH_JSI12Kac_6	135.87	131.25			1.1808	1.045	12.855	7	1	Median	1.1955	1.0145	4.1938	2	0	Median	0.88685	1.0287	9.6064	2	0	Median	1.0083	0.95626	NaN	1	0	Median	1.1828	1.2848	2.241	2	1	Median	291500000	143530000	147970000	48664000	23178000	25486000	72714000	38479000	34234000	51995000	28954000	23042000	118130000	52921000	65207000	59413	27;2073;2074;4359	55982	362199;362200;362201;362202;362203;362204;362205;362206	488920;488921;488922;488923;488924;488925;488926;488927;488928;488929;488930;488931	488929		9	12	
YMACCLLYRGDVVPK	1	Unmodified	1843.8783	0.87831701	2073;4359;2074;27	A6NHL2;P68363;P68366;Q9BQE3	TUBAL3;TUBA1B;TUBA4A;TUBA1C	Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	no	no	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	63.021	62.125	3	0.0002613	53585	160511_QHF_FH_JSI12i_3	69.403	64.854			1.0344	1.1313	15.27	2	1	Median	NaN	NaN	NaN	0	0	Median	1.0912	1.2603	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.98051	1.0155	NaN	1	0	Median	183410000	93400000	90012000	0	0	0	66239000	29446000	36794000	0	0	0	117170000	63954000	53218000	59414	27;2073;2074;4359	55983	362207;362208	488932;488933;488934	488934			3	
YMADMDELFSQVDEK	1	Unmodified	1819.7645	0.76445226	5434	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	5										1	2	2	88.136	87.778	2;3	3.2752E-07	79622	160511_QHF_FH_JSI10i_1	139.46	124.78			1.0223	1.1529	14.252	5	0	Median	NaN	NaN	NaN	0	0	Median	1.0223	1.189	NaN	1	0	Median	1.0875	1.0339	15.409	2	0	Median	1.0439	1.072	21.062	2	0	Median	99048000	47672000	51377000	0	0	0	14522000	6710200	7811800	46695000	24145000	22550000	37831000	16817000	21015000	59415	5434	55984	362209;362210;362211;362212;362213	488935;488936;488937;488938;488939;488940;488941;488942;488943;488944	488944			10	
YMAEALLLR	0	Unmodified	1078.5845	0.58450147	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	11.5	6.37		1	1						4	2	1	2	1	70.97	64.819	2	0.000854	35658	160513_QHF_FH_JSI10Kac_6	89.401	67.27			1.0242	0.9415	31.449	6	1	Median	0.87059	0.72664	26.277	2	1	Median	0.59564	0.70776	NaN	1	0	Median	1.1567	1.1641	19.655	2	0	Median	1.1401	1.2548	NaN	1	0	Median	395040000	202640000	192400000	62855000	32981000	29874000	66638000	42952000	23686000	251980000	119450000	132530000	13571000	7260300	6311100	59416	611	55985	362214;362215;362216;362217;362218;362219	488945;488946;488947;488948;488949	488948			5	
YMAFAHDLMADAQR	0	Unmodified	1638.7283	0.72828195	1071	P15289	ARSA	Arylsulfatase A;Arylsulfatase A component B;Arylsulfatase A component C	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	64.134	63.845	3	0.0057595	55098	160511_QHF_FH_JSI12i_3	38.337	26.052			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59417	1071	55986	362220	488950	488950			1	
YMAQGKHIGK	2	Acetyl (K)	1173.5965	0.59646314	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.458								3	7	3	5	1	1	26.786	18.245	2;3	2.5223E-05	10858	160513_QHF_FH_JSI10Kac_6	100.48	85.216			0.88914	0.91124	142.32	10	5	Median	1.0935	0.96121	79.775	3	1	Plateau	0.72298	0.86387	199.54	5	4	Median	0.62257	0.60594	NaN	1	0	Median	0.71647	0.75621	NaN	1	0	Median	431640000	224300000	207340000	89910000	38477000	51434000	166470000	84301000	82166000	97561000	56463000	41098000	77700000	45061000	32639000	59418	1650	55987	362221;362222;362223;362224;362225;362226;362227;362228;362229;362230	488951;488952;488953;488954;488955;488956;488957;488958;488959;488960;488961;488962;488963;488964	488962	1673		14	
YMAQGKHIGK	2	Acetyl (K);Oxidation (M)	1189.5914	0.59137776	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	1	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	21.376	13.732	3	6.3449E-05	8197	160513_QHF_FH_JSI9Kac_6	96.342	89.063			0.81875	0.90053	20.952	4	0	Median	1.1723	1.0076	NaN	1	0	Median	0.89087	1.0681	NaN	1	0	Median	0.69682	0.67804	NaN	1	0	Median	0.75246	0.80486	NaN	1	0	Median	117780000	61201000	56577000	23833000	11073000	12759000	32414000	16389000	16025000	19307000	11577000	7730200	42224000	22162000	20062000	59419	1650	55987	362231;362232;362233;362234	488965;488966;488967;488968;488969;488970;488971;488972	488967	1673	1328	8	
YMDAWNTVSR	0	Unmodified	1241.5499	0.54990688	5668	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	44.887	43.939	2	0.0005345	37430	160511_QHF_FH_JSI12i_2	71.614	66.132			0.59851	0.73774	23.16	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.59851	0.73774	NaN	1	0	Median	1.141	1.1719	NaN	1	1	Median	0.82359	0.9149	NaN	1	0	Median	1053100000	626320000	426750000	0	0	0	333620000	205200000	128420000	503650000	291170000	212480000	215800000	129950000	85853000	59420	5668	55988	362235;362236;362237	488973;488974;488975;488976	488973			4	
YMDLLWR	0	Unmodified	995.48987	0.48987281	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	72.684	71.806	2	0.010355	62927	160511_QHF_FH_JSI11i_2	80.462	69.094			0.93601	1.0179	16.095	4	0	Median	1.3054	1.1296	NaN	1	0	Median	0.75998	0.91733	NaN	1	0	Median	1.1528	1.1703	NaN	1	0	Median	0.75756	0.83913	NaN	1	0	Median	232410000	113260000	119150000	35785000	18394000	17390000	57115000	29384000	27731000	83997000	33459000	50538000	55514000	32023000	23490000	59421	558	55989	362238;362239;362240;362241	488977;488978;488979;488980;488981;488982	488980			6	
YMDVPENNQHGYEAGSVALHVEK	1	Unmodified	2586.1809	0.18090085	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	50.97	50.734	4	8.7086E-05	43430	160511_QHF_FH_JSI12i_3	51.827	44.795			1.0529	1.1846	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0529	1.1846	NaN	1	0	Median	71485000	33523000	37962000	0	0	0	0	0	0	0	0	0	71485000	33523000	37962000	59422	3308	55990	362242	488983;488984	488984			2	
YMEAFKPFLGIGLK	2	Oxidation (M)	1628.8636	0.86363645	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	1	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	82.218	81.513	3	0.0018584	70753	160511_QHF_FH_JSI12i_3	68.83	57.551			1.0859	0.97738	17.131	4	3	Median	1.272	1.0167	NaN	1	0	Median	0.70681	0.81564	NaN	1	1	Median	1.2996	1.2299	NaN	1	1	Median	0.927	0.93962	NaN	1	1	Median	400740000	181830000	218910000	53924000	21127000	32797000	52693000	32562000	20131000	125200000	57142000	68062000	168920000	70995000	97924000	59423	2585	55991	362243;362244;362245;362246	488985;488986;488987;488988	488988		2034	4	
YMEAFKPFLGIGLK	2	Unmodified	1612.8687	0.86872182	2585	Q14974	KPNB1	Importin subunit beta-1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.87	0.34		2	13							3	4	3	5	92.608	92.122	2;3	6.2027E-05	79548	160511_QHF_FH_JSI12i_3	129.89	108.52			0.53556	0.51012	105.69	15	15	Median	1.4743	1.2197	127.05	3	3	Plateau	0.45254	0.52658	80.034	4	4	Median	0.54255	0.51451	112.1	3	3	Median	0.46768	0.51012	135.4	5	5	Median	2430800000	1274100000	1156700000	268540000	126210000	142330000	410460000	278880000	131580000	585630000	305300000	280330000	1166200000	563690000	602480000	59424	2585	55991	362247;362248;362249;362250;362251;362252;362253;362254;362255;362256;362257;362258;362259;362260;362261	488989;488990;488991;488992;488993;488994;488995;488996;488997;488998;488999;489000;489001;489002;489003;489004;489005;489006;489007;489008;489009	489009			21	
YMEENDQLK	1	Unmodified	1168.507	0.50703901	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	4									2	1	1		20.495	19.82	2	8.7542E-06	16847	160511_QHF_FH_JSI9i_1	129.42	116.04			0.49897	0.43959	78.149	4	4	Median	1.0773	0.88309	112.19	2	2	Median	0.317	0.37148	NaN	1	1	Median	0.50782	0.48377	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1248600000	745420000	503170000	676370000	359100000	317270000	250830000	183800000	67028000	321390000	202520000	118870000	0	0	0	59425	1741	55992	362262;362263;362264;362265	489010;489011;489012;489013;489014	489014			5	
YMEENDQLK	1	Oxidation (M)	1184.502	0.50195363	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	1	0		By MS/MS	By matching	By MS/MS	10	5.2	1					3					1	1	2	18.383	12.812	2	0.012002	8320	160513_QHF_FH_JSI12Kac_3	51.854	41.867			0.81997	0.87515	18.815	4	1	Median	NaN	NaN	NaN	0	0	Median	0.53198	0.60815	NaN	1	0	Median	0.93794	0.89947	NaN	1	0	Median	0.81997	0.87515	3.6049	2	1	Median	85623000	43600000	42022000	0	0	0	2150700	1371400	779240	3406700	1665100	1741700	80065000	40564000	39501000	59426	1741	55992	362266;362267;362268;362269	489015;489016;489017	489016		1426	3	
YMEENDQLKK	2	Unmodified	1296.602	0.60200203	1741	P51572	BCAP31	B-cell receptor-associated protein 31	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4									1	2	2	15.379	14.803	2	0.0011872	11764	160511_QHF_FH_JSI11i_2	85.716	65.091			0.98986	1.0211	21.024	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1418	1.1235	29.516	2	2	Median	0.92748	1.0054	18.203	2	2	Median	161800000	77995000	83800000	0	0	0	0	0	0	82890000	36667000	46223000	78906000	41328000	37577000	59427	1741	55993	362270;362271;362272;362273;362274	489018;489019;489020;489021;489022	489021			5	
YMELYTHVYNYCTSVHQSNQAR	0	Unmodified	2763.217	0.21696878	2453	Q13616	CUL1	Cullin-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	16	0									2		1		1	61.935	52.789	4	3.3107E-18	29039	160513_QHF_FH_JSI10Kac_6	132.65	129.88			1.1577	1.2938	51.984	2	1	Median	NaN	NaN	NaN	0	0	Median	0.77225	0.89587	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.7354	1.8686	NaN	1	1	Median	58429000	31017000	27412000	0	0	0	50869000	29047000	21822000	0	0	0	7560300	1970300	5589900	59428	2453	55994	362275;362276	489023;489024;489025;489026	489026			4	
YMEVSGNLR	0	Unmodified	1067.507	0.50697943	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.492	29.578	2	0.00010621	25902	160511_QHF_FH_JSI10i_2	93.195	21.246			0.83007	0.80721	46.206	4	1	Median	1.0205	0.8646	NaN	1	0	Median	0.55584	0.6704	NaN	1	0	Median	1.8463	1.867	NaN	1	0	Median	0.67515	0.75363	NaN	1	1	Median	420330000	214020000	206300000	71207000	38091000	33116000	73692000	44198000	29494000	167650000	67611000	100040000	107770000	64121000	43651000	59429	2319	55995	362277;362278;362279;362280	489027;489028;489029;489030;489031	489031			5	
YMEVSGNLRDLYDDK	1	Unmodified	1816.8302	0.83016406	2319	Q12874	SF3A3	Splicing factor 3A subunit 3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			3									1	2	60.735	60.552	2;3	0.00015721	52177	160511_QHF_FH_JSI12i_3	75.911	65.252			0.93521	0.93799	14.356	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2476	1.1842	NaN	1	0	Median	0.90898	0.92467	2.0224	2	0	Median	378250000	171390000	206860000	0	0	0	0	0	0	125990000	45278000	80716000	252260000	126120000	126140000	59430	2319	55996	362281;362282;362283	489032;489033;489034;489035;489036;489037	489035			6	
YMFFNREDVLWFK	1	Unmodified	1793.8599	0.85994805	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			87.3	81.581	3	0.0053991	45985	160513_QHF_FH_JSI10Kac_6	61.375	44.71			0.20996	0.25198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.20996	0.25198	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	65423000	57128000	8295300	0	0	0	65423000	57128000	8295300	0	0	0	0	0	0	59431	2795	55997	362284	489038	489038			1	
YMFFNREDVLWFKPVELR	1	Unmodified	2388.2089	0.20889392	2795	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	yes	yes	0	0	0	2		By MS/MS			16	0									1		1			88.796	83.075	4	0.0072661	46990	160513_QHF_FH_JSI10Kac_6	58.688	50.602			0.68724	0.81655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.68724	0.81655	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	253690000	141500000	112190000	0	0	0	253690000	141500000	112190000	0	0	0	0	0	0	59432	2795	55998	362285	489039	489039			1	
YMGAAAMYLISK	1	Unmodified	1317.6461	0.64611545	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.78	6.46			5						4	2	2	3	2	75.78	71.691	2	2.772E-24	38733	160513_QHF_FH_JSI10Kac_6	170.47	154.59			1.1286	1.0265	39.414	9	2	Median	1.3327	1.114	11.57	2	0	Median	0.7758	0.92	3.7635	2	0	Median	1.1286	1.0612	73.154	3	2	Median	1.0819	1.1278	32.455	2	0	Median	2932900000	1400500000	1532400000	588930000	266750000	322180000	758040000	333320000	424720000	1031400000	510140000	521240000	554520000	290280000	264250000	59433	4773	55999	362286;362287;362288;362289;362290;362291;362292;362293;362294	489040;489041;489042;489043;489044;489045;489046;489047;489048;489049;489050;489051;489052;489053;489054;489055;489056	489056			17	
YMGAAAMYLISK	1	Oxidation (M)	1333.641	0.64103007	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.37			4						6	3	2	3	2	67.224	61.184	2	8.8565E-16	33203	160513_QHF_FH_JSI11Kac_6	140.17	124.55			0.94136	0.98675	16.762	8	1	Median	1.1449	0.96459	12.159	2	0	Median	0.85104	0.99199	1.091	2	0	Median	0.80879	0.78697	19.965	2	1	Median	1.0557	1.1015	15.222	2	0	Median	271030000	142240000	128780000	76241000	32758000	43483000	62808000	37440000	25368000	44351000	25848000	18503000	87626000	46196000	41430000	59434	4773	55999	362295;362296;362297;362298;362299;362300;362301;362302;362303;362304	489057;489058;489059;489060;489061;489062;489063;489064;489065;489066	489060		2529;2530	10	
YMGAAAMYLISK	1	2 Oxidation (M)	1349.6359	0.63594469	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	2	0	By MS/MS				16	0									1	1				57.525	48.374	2	0.0071013	25775	160513_QHF_FH_JSI9Kac_6	45.137	40.838			1.065	0.92747	NaN	1	0	Median	1.065	0.92747	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13263000	7247800	6015300	13263000	7247800	6015300	0	0	0	0	0	0	0	0	0	59435	4773	55999	362305	489067;489068	489068		2529;2530	2	
YMGDLSGGQVLK	1	Unmodified	1266.6278	0.62782285	1355	P30519	HMOX2	Heme oxygenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		49.944	49.099	2	0.00033325	42450	160511_QHF_FH_JSI11i_2	84.17	69.305			0.95508	0.95816	29.515	3	1	Median	0.80777	0.68521	NaN	1	1	Median	1.0142	1.2341	NaN	1	0	Median	0.95508	0.95816	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	267760000	124800000	142960000	70911000	34393000	36518000	65650000	26184000	39466000	131200000	64223000	66974000	0	0	0	59436	1355	56000	362306;362307;362308	489069;489070;489071	489070			3	
YMGKGVSK	2	Unmodified	868.44767	0.44767364	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			7.428	6.9072	3	0.059847	4789	160511_QHF_FH_JSI10i_3	29.473	11.438			0.22608	0.27333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.22608	0.27333	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	84309000	68766000	15543000	0	0	0	84309000	68766000	15543000	0	0	0	0	0	0	59437	854	56001	362309	489072	489072			1	
YMGKGVSK	2	Acetyl (K)	910.45824	0.45823833	854	P06733	ENO1	Alpha-enolase	yes	yes	1	0	0	1		By matching	By MS/MS	By matching	15	0								3			1	1	1	24.156	14.916	2	0.0034151	10085	160513_QHF_FH_JSI11Kac_5	91.318	62.806			0.4926	0.55656	54.051	3	0	Median	NaN	NaN	NaN	0	0	Median	0.8782	1.0468	NaN	1	0	Median	0.36226	0.35705	NaN	1	0	Median	0.4926	0.55656	NaN	1	0	Median	30304000	20445000	9858300	0	0	0	8729600	4073500	4656100	14953000	11604000	3348300	6621400	4767500	1853900	59438	854	56001	362310;362311;362312	489073	489073	521;530		1	
YMHAGSSDLLSEAIPESLK	1	Unmodified	2046.9932	0.99320665	3838	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	77.785	76.561	3	0.00097008	66136	160511_QHF_FH_JSI12i_2	45.347	39.805			0.89914	0.96734	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89914	0.96734	NaN	1	0	Median	31886000	18098000	13789000	0	0	0	0	0	0	0	0	0	31886000	18098000	13789000	59439	3838	56002	362313	489074	489074			1	
YMHSGPVVAMVWEGLNVVK	1	Oxidation (M)	2131.0595	0.059452494	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			26						13	14	9	5	11	89.793	85.941	2;3	2.2813E-13	45643	160513_QHF_FH_JSI10Kac_6	127.78	119.79			1.0217	1.0109	19.875	31	7	Median	1.2228	0.9978	20.807	11	3	Median	0.90524	0.99848	31.073	7	3	Median	1.0077	0.93801	4.81	5	0	Median	1.0267	1.0581	13.065	8	1	Median	5857300000	2813400000	3043900000	1573400000	717920000	855460000	1221500000	632670000	588810000	1167500000	583950000	583550000	1894900000	878820000	1016100000	59440	1079	56003	362314;362315;362316;362317;362318;362319;362320;362321;362322;362323;362324;362325;362326;362327;362328;362329;362330;362331;362332;362333;362334;362335;362336;362337;362338;362339;362340;362341;362342;362343;362344;362345;362346;362347;362348;362349;362350;362351;362352	489075;489076;489077;489078;489079;489080;489081;489082;489083;489084;489085;489086;489087;489088;489089;489090;489091;489092;489093;489094;489095;489096;489097;489098;489099;489100;489101;489102;489103;489104;489105;489106;489107;489108;489109;489110;489111;489112;489113;489114;489115;489116;489117;489118;489119;489120;489121;489122;489123;489124;489125;489126;489127;489128;489129;489130;489131;489132;489133;489134;489135;489136;489137;489138;489139;489140;489141;489142;489143;489144	489143		723;724	68	
YMHSGPVVAMVWEGLNVVK	1	Unmodified	2115.0645	0.064537872	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.47	5.1			47						11	18	21	6	13	101.05	99.195	2;3;4	6.7254E-104	45799	160513_QHF_FH_JSI9Kac_6	289.23	273.84			0.97505	0.97767	16.637	49	17	Median	1.1305	0.93856	17.717	15	6	Median	0.85952	1.0164	16.207	18	4	Median	0.99897	0.93542	12.632	5	1	Median	0.9335	0.96999	17.103	11	6	Median	21344000000	10446000000	10899000000	2882900000	1357300000	1525600000	5320400000	2910000000	2410300000	4626800000	2081700000	2545200000	8514200000	4096700000	4417600000	59441	1079	56003	362353;362354;362355;362356;362357;362358;362359;362360;362361;362362;362363;362364;362365;362366;362367;362368;362369;362370;362371;362372;362373;362374;362375;362376;362377;362378;362379;362380;362381;362382;362383;362384;362385;362386;362387;362388;362389;362390;362391;362392;362393;362394;362395;362396;362397;362398;362399;362400;362401;362402;362403;362404;362405;362406;362407;362408;362409;362410	489145;489146;489147;489148;489149;489150;489151;489152;489153;489154;489155;489156;489157;489158;489159;489160;489161;489162;489163;489164;489165;489166;489167;489168;489169;489170;489171;489172;489173;489174;489175;489176;489177;489178;489179;489180;489181;489182;489183;489184;489185;489186;489187;489188;489189;489190;489191;489192;489193;489194;489195;489196;489197;489198;489199;489200;489201;489202;489203;489204;489205;489206;489207;489208;489209;489210;489211;489212;489213;489214;489215;489216;489217;489218;489219;489220;489221;489222;489223;489224;489225;489226;489227	489202			82	
YMHSGPVVAMVWEGLNVVK	1	2 Oxidation (M)	2147.0544	0.054367116	1079	P15531	NME1	Nucleoside diphosphate kinase A	yes	yes	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.25	5.63			9						3	4	4	1	3	83.223	79.569	3	4.721E-19	39160	160513_QHF_FH_JSI9Kac_6	144.3	130.05			1.1027	1.0585	24.457	9	4	Median	1.1803	0.97442	8.9328	4	1	Median	1.2158	1.4164	31.205	3	2	Plateau	1.8316	1.7038	NaN	1	1	Median	1.0549	1.125	NaN	1	0	Median	689380000	313110000	376280000	380280000	178900000	201380000	106740000	49845000	56897000	67838000	21738000	46101000	134520000	62625000	71894000	59442	1079	56003	362411;362412;362413;362414;362415;362416;362417;362418;362419;362420;362421;362422	489228;489229;489230;489231;489232;489233;489234;489235;489236;489237;489238;489239;489240;489241;489242;489243	489238		723;724	15	
YMIGVTYGGDDIPLSPYR	0	Unmodified	2015.9663	0.96626362	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	1.8	0.4	1	4								1		2	2	90.176	89.636	2	2.635E-11	78850	160511_QHF_FH_JSI9i_2	143.86	107.01			1.2902	1.3336	15.602	4	0	Median	1.9978	1.6898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2601	1.2215	1.0468	2	0	Median	1.3124	1.4453	NaN	1	0	Median	231320000	97207000	134120000	49627000	19709000	29919000	0	0	0	102130000	47682000	54449000	79564000	29816000	49749000	59443	512	56004	362423;362424;362425;362426;362427	489244;489245;489246;489247	489246			4	
YMIGVTYGGDDIPLSPYR	0	Oxidation (M)	2031.9612	0.96117824	512	O75369	FLNB	Filamin-B	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	83.371	82.277	2	0.00044975	71137	160511_QHF_FH_JSI12i_2	72.089	56.55			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59444	512	56004	362428	489248	489248		191	1	
YMIVDEGHR	0	Unmodified	1118.5179	0.51787847	1737;1736	P51531;P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	no	no	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	25.266	24.461	2	0.0034126	20161	160511_QHF_FH_JSI11i_2	60.436	54.777			0.98444	1.0666	42.077	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.369	1.4363	NaN	1	0	Median	0.7079	0.79214	NaN	1	0	Median	110660000	68006000	42655000	0	0	0	0	0	0	39518000	18343000	21175000	71143000	49663000	21480000	59445	1736;1737	56005	362429;362430	489249	489249			1	
YMKMIQLGK	2	Acetyl (K)	1152.6035	0.60352235	4153	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		70.13	60.616	2	2.1379E-06	32833	160513_QHF_FH_JSI11Kac_6	133.55	108.73			0.033438	0.031916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.033438	0.031916	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	27647000	26595000	1052400	0	0	0	0	0	0	27647000	26595000	1052400	0	0	0	59446	4153	56006	362431	489250	489250	3057		1	
YMLLPNQVWDSIIQQATK	1	Unmodified	2147.1085	0.10851118	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.27	4.63		7	6						2	3	4	4	4	101.86	100.56	2;3	8.7339E-160	89257	160511_QHF_FH_JSI12i_3	302.35	278			0.93454	0.92004	30.118	15	3	Median	0.93454	0.794	17.364	3	0	Median	0.71024	0.83558	42.822	4	2	Median	0.94073	0.92167	23.342	4	0	Median	1.5549	1.6075	25.481	4	1	Linear	3211200000	1526600000	1684600000	515520000	240240000	275280000	470760000	263410000	207350000	923530000	475940000	447590000	1301400000	547020000	754420000	59447	231	56007	362432;362433;362434;362435;362436;362437;362438;362439;362440;362441;362442;362443;362444;362445;362446	489251;489252;489253;489254;489255;489256;489257;489258;489259;489260;489261;489262;489263;489264;489265;489266;489267;489268;489269;489270;489271	489271			21	
YMLPLDNLK	1	Unmodified	1105.5842	0.58416712	1711	P50570	DNM2	Dynamin-2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								1	2	2	3	72.249	71.603	2	0.00029471	65034	160511_QHF_FH_JSI11i_1	94.302	76.917			1.0094	1.0273	58.035	6	5	Median	1.4146	1.2053	NaN	1	1	Median	0.64322	0.76573	NaN	1	1	Median	0.91275	0.90777	23.895	2	2	Median	1.7483	1.8901	92.63	2	1	Median	837430000	321840000	515580000	147310000	55865000	91448000	43664000	24490000	19174000	322730000	157630000	165110000	323720000	83860000	239860000	59448	1711	56008	362447;362448;362449;362450;362451;362452;362453;362454	489272;489273;489274;489275;489276;489277;489278;489279	489272			8	
YMLTHQELASDGEIETK	1	Unmodified	1963.9197	0.91970735	2186	Q02241	KIF23	Kinesin-like protein KIF23	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		48.691	48.17	3	0.00011524	41475	160511_QHF_FH_JSI11i_2	76.713	61.321			1.8185	1.8851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.8185	1.8851	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	35858000	7556700	28301000	0	0	0	0	0	0	35858000	7556700	28301000	0	0	0	59449	2186	56009	362455;362456	489280;489281	489281			2	
YMMVDSAEDQK	1	Unmodified	1315.5424	0.54243824	4710	Q9H467	CUEDC2	CUE domain-containing protein 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	2	2	31.119	30.74	2	8.8291E-05	27494	160511_QHF_FH_JSI12i_1	99.688	94.747			0.74744	0.82238	52.778	6	6	Median	NaN	NaN	NaN	0	0	Median	0.69826	0.8135	43.994	2	2	Median	0.95955	0.93244	95.417	2	2	Median	0.8387	0.87955	51.962	2	2	Median	301400000	173340000	128060000	0	0	0	143200000	92889000	50308000	77978000	42851000	35127000	80226000	37601000	42624000	59450	4710	56010	362457;362458;362459;362460;362461;362462	489282;489283;489284;489285;489286;489287	489284			6	
YMMWFQR	0	Unmodified	1060.4623	0.46227785	488	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	74.152	65.463	2	0.010231	35620	160513_QHF_FH_JSI11Kac_6	83.229	60.607			0.88367	0.94543	11.403	4	0	Median	1.2422	1.0572	NaN	1	0	Median	0.78074	0.92568	NaN	1	0	Median	1.0002	0.96561	NaN	1	0	Median	0.72719	0.80398	NaN	1	0	Median	190810000	93526000	97286000	26477000	10277000	16200000	127610000	63444000	64161000	22386000	11104000	11282000	14344000	8700000	5643800	59451	488	56011	362463;362464;362465;362466	489288;489289;489290;489291;489292	489289			5	
YMNSDTTSPELR	0	Unmodified	1412.6242	0.62419403	4247	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	28.644	28.203	2	0.0019064	25236	160511_QHF_FH_JSI12i_1	59.067	53.847			1.4877	1.634	22.291	2	1	Median	NaN	NaN	NaN	0	0	Median	1.2274	1.3958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8031	1.913	NaN	1	0	Median	60335000	19942000	40394000	0	0	0	24202000	7653500	16549000	0	0	0	36133000	12288000	23845000	59452	4247	56012	362467;362468;362469	489293;489294;489295	489294			3	
YMNSGPVVAMVWEGLNVVK	1	2 Oxidation (M)	2124.0384	0.038382701	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	2	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.51		3	1						1	1	1	1	2	95.706	93.694	3	1.3379E-09	42462	160513_QHF_FH_JSI12Kac_6	108.92	98.077			1.0647	1.035	9.2464	5	2	Median	1.1578	0.96975	NaN	1	1	Median	0.71765	0.92314	NaN	1	1	Median	1.1061	1.035	NaN	1	0	Median	1.0578	1.1318	2.974	2	0	Median	147160000	80301000	66858000	7995500	3573500	4421900	12625000	7657700	4967500	35654000	14253000	21401000	90884000	54817000	36067000	59453	1209	56013	362470;362471;362472;362473;362474	489296;489297;489298;489299;489300;489301;489302	489301		840;841	7	
YMNSGPVVAMVWEGLNVVK	1	Oxidation (M)	2108.0435	0.043468079	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.05	6.63		6	7						9	3	6	4	9	98.581	95.066	2;3	2.7956E-56	49213	160513_QHF_FH_JSI11Kac_6	192.24	178.5			1.016	1.0053	27.156	22	13	Median	1.0891	0.90638	7.7486	3	0	Plateau	0.76375	0.90242	27.462	6	5	Median	1.09	1.0552	8.5593	4	1	Median	1.0132	1.042	35.639	9	7	Median	6957600000	3387800000	3569700000	648390000	320570000	327820000	1036800000	587590000	449250000	1389100000	690930000	698170000	3883200000	1788800000	2094500000	59454	1209	56013	362475;362476;362477;362478;362479;362480;362481;362482;362483;362484;362485;362486;362487;362488;362489;362490;362491;362492;362493;362494;362495;362496	489303;489304;489305;489306;489307;489308;489309;489310;489311;489312;489313;489314;489315;489316;489317;489318;489319;489320;489321;489322;489323;489324;489325	489309		840;841	22	
YMNSGPVVAMVWEGLNVVK	1	Unmodified	2092.0486	0.048553457	1209	P22392;O60361	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.64		8	7						10	5	6	6	8	100.31	96.813	2;3	1.373E-237	90103	160511_QHF_FH_JSI9i_2	349.57	341.16			1.0111	1.0656	10.545	25	4	Median	1.2577	1.0658	5.2378	5	0	Median	0.89376	1.065	8.3323	6	0	Median	0.99913	0.95167	11.316	6	0	Median	1.0342	1.0869	12.654	8	4	Median	28696000000	13660000000	15036000000	3497000000	1539600000	1957400000	5393600000	2975500000	2418100000	8750800000	4181900000	4568800000	11055000000	4962800000	6092200000	59455	1209	56013	362497;362498;362499;362500;362501;362502;362503;362504;362505;362506;362507;362508;362509;362510;362511;362512;362513;362514;362515;362516;362517;362518;362519;362520;362521	489326;489327;489328;489329;489330;489331;489332;489333;489334;489335;489336;489337;489338;489339;489340;489341;489342;489343;489344;489345;489346;489347;489348;489349;489350;489351;489352;489353;489354;489355;489356;489357;489358;489359;489360;489361;489362;489363;489364;489365;489366;489367;489368;489369;489370;489371	489348			46	
YMNSLLIGELSPEQPSFEPTK	1	Unmodified	2379.1668	0.16681392	415	O60427	FADS1	Fatty acid desaturase 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		96.283	96.065	3	0.0016561	84304	160511_QHF_FH_JSI11i_2	45.992	37.903			1.0927	1.0217	50.535	2	2	Median	0.84354	0.7147	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.4155	1.4605	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	44349000	19933000	24416000	9569400	5890400	3679100	0	0	0	34780000	14043000	20737000	0	0	0	59456	415	56014	362522;362523	489372;489373	489373			2	
YMPAVTSTPTVNQHETSTSK	1	Unmodified	2178.0263	0.02629769	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	40.408	39.735	3	1.6265E-06	33901	160511_QHF_FH_JSI12i_3	85.146	60.859			1.0386	0.99823	29.803	5	0	Median	0.64203	0.53922	NaN	1	0	Median	0.62966	0.76149	NaN	1	0	Median	1.052	0.99823	NaN	1	0	Median	1.0468	1.0752	2.574	2	0	Median	197560000	111780000	85772000	22784000	11144000	11640000	43173000	30656000	12517000	63832000	34831000	29001000	67766000	35152000	32614000	59457	2637	56015	362524;362525;362526;362527;362528;362529	489374;489375;489376;489377;489378;489379;489380;489381;489382;489383;489384	489383			11	
YMPDICVIR	0	Unmodified	1165.5624	0.56238582	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0			By MS/MS	By matching	2	0		2										1	1	67.765	66.828	2	0.0087891	58343	160511_QHF_FH_JSI11i_2	51.854	42.991			1.6992	1.8272	19.564	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5189	1.5911	NaN	1	0	Median	1.9008	2.0983	NaN	1	0	Median	65013000	24039000	40973000	0	0	0	0	0	0	37513000	15682000	21831000	27500000	8357200	19143000	59458	3921	56016	362530;362531	489385	489385			1	
YMPHAVLK	1	Unmodified	957.51061	0.51060825	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.85	3.53		2	10						1	4	4	3	2	30.584	29.012	2;3	0.0016567	24216	160511_QHF_FH_JSI10i_3	54.157	54.157			1.155	1.1837	72.122	12	6	Median	0.81871	0.68411	78.211	4	3	Median	0.98084	1.1183	96.864	3	0	Median	1.9139	1.8934	34.787	3	2	Median	1.3806	1.3903	19.025	2	1	Median	2044400000	975340000	1069100000	376550000	185370000	191180000	354510000	211970000	142540000	516010000	221750000	294260000	797350000	356250000	441100000	59459	3101	56017	362532;362533;362534;362535;362536;362537;362538;362539;362540;362541;362542;362543;362544	489386;489387;489388;489389;489390;489391;489392;489393;489394;489395;489396;489397	489387			12	
YMPHAVLK	1	Oxidation (M)	973.50552	0.50552287	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	1	0	By matching		By matching	By MS/MS	2.25	0.433		3	1							1		1	2	29.252	28.561	3	0.011748	23908	160511_QHF_FH_JSI12i_3	38.962	24.756			1.1666	1.1337	57.507	4	0	Median	1.3994	1.2158	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97253	0.96463	NaN	1	0	Median	1.7752	1.879	81.343	2	0	Median	176530000	74463000	102060000	42475000	11795000	30680000	0	0	0	44666000	24633000	20033000	89385000	38035000	51350000	59460	3101	56017	362545;362546;362547;362548	489398	489398		2199	1	
YMPQFMK	1	Unmodified	943.42958	0.42958073	5576	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	53.723	52.819	2	0.0091535	46589	160511_QHF_FH_JSI11i_3	80.377	60.095			0.99078	0.9303	26.729	8	1	Median	1.2339	1.02	30.212	2	0	Median	0.80189	0.94825	25.594	2	0	Median	0.79665	0.78665	40.921	2	1	Median	0.94447	0.99992	30.273	2	0	Median	985220000	449410000	535820000	185940000	76428000	109520000	195220000	100210000	95009000	321000000	143460000	177540000	283060000	129300000	153750000	59461	5576	56018	362549;362550;362551;362552;362553;362554;362555;362556	489399;489400;489401;489402;489403;489404;489405;489406;489407;489408;489409;489410	489400			12	
YMPQNPCIIATK	1	Unmodified	1434.6999	0.69994194	2283	Q09028	RBBP4	Histone-binding protein RBBP4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	2	2	2	52.701	51.934	2	0.001168	46716	160511_QHF_FH_JSI10i_1	64.82	37.705			0.84743	0.9307	19.529	7	0	Median	1.2155	1.0317	NaN	1	0	Median	0.77117	0.91006	3.1713	2	0	Median	0.81408	0.80808	2.5567	2	0	Median	1.18	1.2716	6.0843	2	0	Median	526730000	297270000	229460000	34445000	15854000	18591000	140400000	86710000	53693000	213390000	124160000	89238000	138490000	70554000	67934000	59462	2283	56019	362557;362558;362559;362560;362561;362562;362563	489411;489412;489413;489414;489415;489416;489417;489418;489419;489420;489421	489415			10	
YMPQNPHIIATK	1	Oxidation (M)	1427.7231	0.72312022	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.11	4.87		1	14						3	4	5	4	5	32.55	30.439	2;3	3.1772E-06	25287	160511_QHF_FH_JSI12i_3	125.74	107.3			1.1648	1.104	44.225	17	1	Median	1.0749	0.8753	28.806	4	0	Median	0.87131	1.0307	14.636	4	1	Median	1.1025	1.0641	17.626	4	0	Median	1.4147	1.4299	59.993	5	0	Median	2744100000	1237600000	1506500000	177390000	78639000	98753000	296380000	171780000	124610000	523470000	258900000	264560000	1746800000	728270000	1018600000	59463	2741	56020	362564;362565;362566;362567;362568;362569;362570;362571;362572;362573;362574;362575;362576;362577;362578;362579;362580;362581	489422;489423;489424;489425;489426;489427;489428;489429;489430;489431;489432;489433;489434;489435;489436;489437;489438;489439;489440;489441;489442;489443;489444;489445;489446;489447	489446		2122	25	
YMPQNPHIIATK	1	Unmodified	1411.7282	0.7282056	2741	Q16576	RBBP7	Histone-binding protein RBBP7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.96	6.58		6	9						10	6	8	5	6	42.966	38.778	2;3	8.4763E-10	32636	160511_QHF_FH_JSI10i_3	121.61	86.805			0.96827	0.97926	20.246	23	4	Median	1.2399	1.0673	15.757	6	1	Median	0.83553	0.97326	28.048	6	1	Median	1.0606	0.99651	16.955	5	0	Median	0.85251	0.94277	20.826	6	2	Median	18777000000	7942200000	10835000000	2576900000	1162300000	1414600000	3721900000	1966300000	1755600000	6028700000	2587200000	3441500000	6449400000	2226400000	4222900000	59464	2741	56020	362582;362583;362584;362585;362586;362587;362588;362589;362590;362591;362592;362593;362594;362595;362596;362597;362598;362599;362600;362601;362602;362603;362604;362605;362606	489448;489449;489450;489451;489452;489453;489454;489455;489456;489457;489458;489459;489460;489461;489462;489463;489464;489465;489466;489467;489468;489469;489470;489471;489472;489473;489474;489475;489476;489477;489478;489479;489480;489481;489482;489483;489484;489485;489486;489487;489488;489489;489490;489491;489492;489493;489494;489495;489496;489497;489498;489499;489500;489501;489502;489503	489464			56	
YMQAVIQYGK	1	Unmodified	1199.6009	0.60087982	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.493								5	7	4	3	2	3	53.141	43.124	2	1.4412E-11	23356	160513_QHF_FH_JSI11Kac_6	148.38	135.79			2.2566	2.1074	112.58	11	11	Median	1.9881	1.6873	93.622	4	4	Median	0.80874	0.96633	155.3	2	2	Median	0.8106	0.75024	146.06	2	2	Median	3.4884	0.99619	154.61	3	3	Plateau	361450000	173420000	188030000	130150000	52598000	77553000	36603000	18935000	17668000	120400000	66988000	53408000	74300000	34894000	39405000	59465	2419	56021	362607;362608;362609;362610;362611;362612;362613;362614;362615;362616;362617;362618	489504;489505;489506;489507;489508;489509;489510;489511;489512;489513;489514;489515	489507			12	
YMQAVIQYGK	1	Oxidation (M)	1215.5958	0.59579444	2419	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.3	1.11						2	1	2	1	1	3	1	1	37.046	25.739	2	0.0035028	6201	160513_QHF_FH_JSI9Kac_3	63.565	55.345			0.83279	0.93933	32.577	5	1	Median	1.3316	0.46809	NaN	1	0	Median	0.82057	0.97496	1.4886	2	0	Median	0.6721	0.656	NaN	1	1	Median	0.85752	0.93933	NaN	1	0	Median	38581000	21957000	16624000	3036200	1245700	1790600	12455000	6909400	5545400	11490000	8124200	3365800	11600000	5678000	5922400	59466	2419	56021	362619;362620;362621;362622;362623;362624	489516;489517;489518;489519;489520	489517		1948	4	
YMSPEQISSQDYGK	1	Unmodified	1631.7137	0.71373732	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	41.436	40.791	2	2.258E-06	36252	160511_QHF_FH_JSI9i_1	152.85	140.99			1.0938	1.0808	13.022	4	0	Median	1.167	0.96916	NaN	1	0	Median	1.0251	1.1922	NaN	1	0	Median	0.99541	0.97984	NaN	1	0	Median	1.1798	1.2451	NaN	1	0	Median	734690000	333670000	401010000	161940000	52448000	109490000	162260000	84963000	77300000	193600000	90687000	102910000	216890000	105570000	111310000	59467	1162	56022	362625;362626;362627;362628	489521;489522;489523;489524;489525;489526;489527;489528;489529;489530;489531	489531			11	
YMSPEQISSQDYGK	1	Oxidation (M)	1647.7087	0.70865195	1162	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	yes	yes	0	0	1	0	By MS/MS				1	0	1									1				42.002	40.788	2	0.02088	36134	160511_QHF_FH_JSI9i_1	44.564	30.658			1.8297	1.4987	NaN	1	0	Median	1.8297	1.4987	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	22009000	9161300	12848000	22009000	9161300	12848000	0	0	0	0	0	0	0	0	0	59468	1162	56022	362629	489532	489532		791	1	
YMSPMEAQEFGILDK	1	Unmodified	1757.8004	0.80044384	2759	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		6								1	1	2	2	81.189	80.438	2;3	1.8173E-07	70890	160511_QHF_FH_JSI9i_2	140.31	130.36			0.96797	1.1516	10.96	5	1	Median	1.4841	1.2743	NaN	1	0	Median	0.93341	1.1516	NaN	1	1	Median	1.0517	1.0583	13.504	2	0	Median	0.96797	1.0352	NaN	1	0	Median	461430000	214680000	246750000	86531000	41682000	44849000	89176000	46308000	42868000	244250000	107880000	136370000	41473000	18812000	22661000	59469	2759	56023	362630;362631;362632;362633;362634;362635	489533;489534;489535;489536;489537;489538;489539;489540;489541	489536			9	
YMSQMSVPEQAELEK	1	Unmodified	1768.8012	0.80117212	2637	Q15154	PCM1	Pericentriolar material 1 protein	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	56.669	56.009	2	0.05561	50871	160511_QHF_FH_JSI12i_1	43.628	29.722			1.3786	1.4408	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3786	1.4408	NaN	1	1	Median	20211000	10018000	10193000	0	0	0	0	0	0	0	0	0	20211000	10018000	10193000	59470	2637	56024	362636	489542	489542			1	
YMSSQHLFK	1	Unmodified	1139.5434	0.54336494	5718	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	27.134	27.115	3	0.012038	22643	160511_QHF_FH_JSI12i_3	43.308	37.273			0.34495	0.33767	52.111	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.24395	0.2336	NaN	1	1	Median	0.48776	0.48812	NaN	1	1	Median	132350000	85212000	47140000	0	0	0	0	0	0	42149000	29685000	12464000	90203000	55528000	34676000	59471	5718	56025	362637;362638	489543;489544	489544			2	
YMTDGMLLR	0	Unmodified	1098.5202	0.52018666	300;398;2544	O43143;O60231;Q14562	DHX15;DHX16;DHX8	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15;Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16;ATP-dependent RNA helicase DHX8	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	2	1	54.339	53.435	2	3.1742E-05	46984	160511_QHF_FH_JSI9i_2	101.64	76.749			1.0119	0.96169	10.004	6	0	Median	1.1583	0.95845	4.4662	2	0	Median	0.75815	0.93493	NaN	1	0	Median	0.95347	0.94536	13.025	2	0	Median	1.032	1.1489	NaN	1	0	Median	2152400000	1073800000	1078600000	389310000	176640000	212670000	439500000	239370000	200130000	794990000	380590000	414390000	528610000	277240000	251370000	59472	300;398;2544	56026	362639;362640;362641;362642;362643;362644	489545;489546;489547;489548;489549;489550;489551;489552;489553	489551			9	
YMTISDEWDIPEK	1	Oxidation (M)	1641.7232	0.72323938	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1	0	2											1	1	64.515	63.975	2	0.00014774	58167	160511_QHF_FH_JSI11i_1	94.191	84.545			2.3024	2.2848	21.473	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7646	2.6595	NaN	1	0	Median	1.9174	1.963	NaN	1	1	Median	69585000	23034000	46551000	0	0	0	0	0	0	36328000	11673000	24655000	33257000	11361000	21896000	59473	1867	56027	362645;362646	489554;489555	489554		1556	2	
YMTISDEWDIPEK	1	Unmodified	1625.7283	0.72832476	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	74.202	73.518	2	3.8049E-41	66449	160511_QHF_FH_JSI10i_1	206.97	194.35			0.94753	0.96344	8.1444	8	0	Median	1.2008	1.0128	11.813	2	0	Median	0.81843	0.97374	7.8111	2	0	Median	0.96501	0.96279	4.8406	2	0	Median	0.9041	0.97779	14.548	2	0	Median	1510100000	777600000	732520000	243750000	119700000	124050000	430530000	219020000	211510000	431190000	195530000	235660000	404640000	243350000	161290000	59474	1867	56027	362647;362648;362649;362650;362651;362652;362653;362654	489556;489557;489558;489559;489560;489561;489562;489563;489564;489565;489566;489567;489568;489569;489570;489571;489572;489573;489574;489575;489576	489565			21	
YMTISGFQIEETIDR	0	Unmodified	1801.8557	0.85565053	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		85.11	84.517	2	6.3309E-05	74363	160511_QHF_FH_JSI11i_2	116.24	99.212			1.0486	1.0941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0486	1.0941	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	37113000	17355000	19758000	0	0	0	0	0	0	37113000	17355000	19758000	0	0	0	59475	916	56028	362655	489577;489578	489577			2	
YMTISGFQIEETIDRETSGNLEQLLLAVVK	1	Unmodified	3396.7487	0.74867285	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching	By MS/MS	11.9	6.27		2	1						7	5	2	1	2	101.05	95.21	3;4	7.1842E-261	49881	160513_QHF_FH_JSI12Kac_6	321.04	311.33			1.0274	0.98072	23.117	10	2	Median	1.1742	0.99136	23.424	5	2	Median	0.79541	0.94338	4.0834	2	0	Median	0.69983	0.68326	NaN	1	0	Median	1.1086	1.1743	24.071	2	0	Median	6002500000	3155300000	2847200000	1898700000	864230000	1034400000	3247500000	1910600000	1336900000	87476000	52428000	35047000	768930000	328040000	440890000	59476	916	56029	362656;362657;362658;362659;362660;362661;362662;362663;362664;362665	489579;489580;489581;489582;489583;489584;489585;489586;489587;489588;489589;489590;489591;489592;489593	489588			15	
YMTISGFQIEETIDRETSGNLEQLLLAVVK	1	Oxidation (M)	3412.7436	0.74358747	916	P08758	ANXA5	Annexin A5	yes	yes	0	0	1	1	By MS/MS			By MS/MS	16	0									2	1			1	99.344	90.046	3	7.0454E-163	49525	160513_QHF_FH_JSI12Kac_6	272.27	259.79			1.0102	0.96536	16.177	2	0	Median	0.98953	0.86102	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0312	1.0824	NaN	1	0	Median	499960000	255780000	244180000	291090000	144580000	146510000	0	0	0	0	0	0	208870000	111200000	97674000	59477	916	56029	362666;362667	489594;489595;489596;489597	489597		495	4	
YMTLNPSTK	1	Unmodified	1053.5165	0.51648149	5330	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	29.72	28.741	2	0.00015606	24183	160511_QHF_FH_JSI11i_2	88.819	75.83			2.4173	2.4264	31.246	4	3	Linear	NaN	NaN	NaN	0	0	Median	0.8636	1.0681	NaN	1	1	Median	2.1069	2.1085	NaN	1	0	Median	1.335	1.5032	24.823	2	2	Median	274670000	120900000	153780000	0	0	0	59487000	33075000	26411000	73888000	23089000	50800000	141300000	64731000	76565000	59478	5330	56030	362668;362669;362670;362671	489598;489599;489600;489601	489600			4	
YMTPEDFVQR	0	Unmodified	1284.5809	0.58087266	562	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	54.522	53.575	2	0.011086	45810	160511_QHF_FH_JSI12i_2	46.891	25.99			0.95458	0.97281	4.9494	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0161	1.0075	NaN	1	0	Median	0.89679	0.93935	NaN	1	0	Median	60745000	26249000	34496000	0	0	0	0	0	0	43744000	19306000	24438000	17000000	6942500	10058000	59479	562	56031	362672;362673	489602	489602			1	
YMVADKFTELQK	2	Acetyl (K);Oxidation (M)	1529.7436	0.74358089	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	1	0	1	1			By MS/MS		15	0								1				1		74.812	64.116	2	0.0016655	34180	160513_QHF_FH_JSI11Kac_5	77.379	67.426			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2159300	2159300	0	0	0	0	0	0	0	2159300	2159300	0	0	0	0	59480	1345	56032	362674	489603	489603	1281	989	1	
YMVADKFTELQK	2	Acetyl (K)	1513.7487	0.74866627	1345	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		78.957	68.37	2	0.00016357	36315	160513_QHF_FH_JSI11Kac_5	95.573	77.709			0.41434	0.40718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.41434	0.40718	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3700800	3067900	632890	0	0	0	0	0	0	3700800	3067900	632890	0	0	0	59481	1345	56032	362675	489604	489604	1281		1	
YMVADRFSELQK	1	Unmodified	1485.7286	0.72859953	1346	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			50.965	49.4	3	0.029262	41277	160511_QHF_FH_JSI10i_3	36.847	29.482			0.52047	0.60913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.52047	0.60913	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9726600	6422800	3303800	0	0	0	9726600	6422800	3303800	0	0	0	0	0	0	59482	1346	56033	362676	489605	489605			1	
YMVALQIAR	0	Unmodified	1063.5848	0.58483582	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	70.296	60.687	2	0.0016147	32923	160513_QHF_FH_JSI11Kac_6	84.097	61.055			1.0413	1.075	32.136	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87919	0.85649	NaN	1	0	Median	1.2333	1.3493	NaN	1	1	Median	44286000	23838000	20448000	0	0	0	0	0	0	31359000	16557000	14801000	12927000	7280200	5646900	59483	3212	56034	362677;362678	489606;489607;489608	489607			3	
YMVQWPGAR	0	Unmodified	1106.5331	0.5331346	5147	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2								3	1	1	41.616	41.049	2;3	0.0047129	48029	160511_QHF_FH_JSI12i_3	56.547	46.959			0.98207	1.1981	124.44	3	2	Median	NaN	NaN	NaN	0	0	Median	0.33651	0.4103	151.55	2	2	Median	NaN	NaN	NaN	0	0	Median	1.2243	1.2271	NaN	1	0	Median	134760000	82717000	52047000	0	0	0	81884000	62114000	19771000	0	0	0	52880000	20603000	32277000	59484	5147	56035	362679;362680;362681;362682;362683	489609;489610;489611;489612;489613	489613			5	
YMVSGTNVYGILR	0	Unmodified	1471.7493	0.74933497	319	O43292	GPAA1	Glycosylphosphatidylinositol anchor attachment 1 protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.62		1	1						3	1	1	1	2	75.955	70.268	2	6.7091E-05	64679	160511_QHF_FH_JSI10i_2	136.63	108.47			1.1544	1.5166	27.505	5	5	Linear	1.5317	1.3172	NaN	1	1	Median	1.1544	1.4218	NaN	1	1	Median	0.95285	0.92992	NaN	1	1	Median	0.92236	0.98946	39.281	2	2	Median	285870000	137850000	148020000	53012000	19124000	33888000	133870000	66505000	67366000	31617000	18174000	13444000	67374000	34046000	33327000	59485	319	56036	362684;362685;362686;362687;362688	489614;489615;489616;489617;489618	489615			5	
YMVWSDEMVK	1	Unmodified	1286.5675	0.56753078	4711	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								2	2	2	1	65.016	64.172	2	0.0013003	56425	160511_QHF_FH_JSI9i_2	77.677	67.446			1.0275	0.96897	34.17	7	6	Median	0.92454	0.8004	27.028	2	2	Median	0.77007	0.92469	41.663	2	2	Median	1.1545	1.1508	46.904	2	2	Median	1.178	1.3344	NaN	1	0	Median	427250000	219050000	208210000	101320000	55664000	45652000	120010000	71120000	48893000	153890000	64927000	88958000	52040000	27337000	24703000	59486	4711	56037	362689;362690;362691;362692;362693;362694;362695	489619;489620;489621;489622;489623;489624;489625	489620			7	
YMVYPQTFALNADRWYQYFTK	1	Unmodified	2704.2784	0.27843005	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	16	0									4	1	1	1	1	95.488	87.095	3	2.7662E-13	48937	160513_QHF_FH_JSI11Kac_6	115.76	112.36			0.79177	1.0529	6.3919	4	0	Linear	1.207	1.0218	NaN	1	0	Median	0.80597	0.95372	NaN	1	0	Median	1.157	1.0953	NaN	1	0	Median	1.0272	1.0849	NaN	1	0	Median	1513100000	753600000	759540000	221500000	89006000	132500000	799640000	439920000	359720000	226380000	103220000	123150000	265620000	121450000	144170000	59487	4890	56038	362696;362697;362698;362699	489626;489627;489628;489629;489630;489631	489626			6	
YMVYPQTFALNADRWYQYFTK	1	Oxidation (M)	2720.2733	0.27334467	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS			16	0									2	1	1			92.812	85.523	3	0.018063	49639	160513_QHF_FH_JSI10Kac_6	35.748	28.301			1.2344	1.2358	9.4505	2	1	Median	1.5226	1.3212	NaN	1	1	Median	1.0007	1.1559	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	254880000	137220000	117660000	75333000	30358000	44975000	179540000	106860000	72680000	0	0	0	0	0	0	59488	4890	56038	362700;362701	489632;489633	489633		2547	2	
YNACILEYK	1	Unmodified	1172.5536	0.55359527	2734	Q16531	DDB1	DNA damage-binding protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	48.878	47.918	2	0.00067888	41028	160511_QHF_FH_JSI12i_2	76.17	56.383			0.6507	0.73902	23.198	3	1	Median	NaN	NaN	NaN	0	0	Median	0.60719	0.73902	NaN	1	1	Median	0.6507	0.65532	NaN	1	0	Median	0.93129	1.0259	NaN	1	0	Median	228010000	133630000	94377000	0	0	0	54001000	33235000	20766000	99050000	58933000	40117000	74959000	41465000	33494000	59489	2734	56039	362702;362703;362704	489634;489635;489636;489637	489634			4	
YNADEAR	0	Unmodified	837.3617	0.3616954	1608	P47813;O14602	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	yes	no	0	0	0	0	By MS/MS				1	0	1									1				5.9198	5.3133	2	0.025048	3210	160511_QHF_FH_JSI9i_1	54.774	43.659			1.1477	0.93499	NaN	1	0	Median	1.1477	0.93499	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	618930000	275250000	343680000	618930000	275250000	343680000	0	0	0	0	0	0	0	0	0	59490	1608	56040	362705	489638	489638			1	
YNAPTSHVTPSVK	1	Unmodified	1399.7096	0.70957864	404	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.45	6.29		2	5					1	3	3	2	3	3	26.27	22.687	2;3	1.4284E-07	18694	160511_QHF_FH_JSI12i_3	110.44	107.22			1.0973	1.0471	37.008	10	1	Plateau	2.4151	1.9976	47.426	2	0	Median	1.6169	1.9394	20.954	2	1	Median	1.1913	1.1276	22.736	3	0	Plateau	0.98762	0.97225	49.002	3	0	Plateau	755260000	396910000	358360000	15460000	4158800	11301000	35208000	14984000	20224000	305850000	161030000	144820000	398750000	216740000	182010000	59491	404	56041	362706;362707;362708;362709;362710;362711;362712;362713;362714;362715;362716	489639;489640;489641;489642;489643;489644;489645;489646;489647;489648;489649;489650	489650			12	
YNDDIRK	1	Unmodified	922.45084	0.45084476	5588	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	7.968	7.3437	2	0.027975	5150	160511_QHF_FH_JSI12i_2	53.554	3.4347			0.87366	0.95794	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87366	0.95794	NaN	1	0	Median	62940000	32809000	30131000	0	0	0	0	0	0	0	0	0	62940000	32809000	30131000	59492	5588	56042	362717	489651	489651			1	
YNDPIYVK	1	Unmodified	1010.5073	0.50729701	2046;2296	P63010;Q10567	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	2	1	1	34.416	33.742	2	0.0021479	30550	160511_QHF_FH_JSI12i_1	82.279	63.548			0.92682	0.93615	10.643	5	0	Median	1.2566	1.0187	NaN	1	0	Median	0.70262	0.85024	13.613	2	0	Median	0.92682	0.892	NaN	1	0	Median	0.93511	0.97339	NaN	1	0	Median	2124300000	1159500000	964820000	395710000	205080000	190620000	644340000	377550000	266790000	607120000	339520000	267600000	477140000	237330000	239810000	59493	2046;2296	56043	362718;362719;362720;362721;362722	489652;489653;489654;489655;489656;489657	489654			6	
YNDTFWK	1	Unmodified	972.43413	0.43413207	1057	P14625;Q58FF3	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.47	6.35	3	4	3					3	2	3	4	5	3	47.172	43.222	2	0.0039163	37791	160511_QHF_FH_JSI11i_3	101.41	70.694			1.0218	0.99794	11.558	15	1	Median	1.1736	0.98307	6.0922	3	0	Plateau	0.80833	0.94436	14.322	4	0	Median	1.1056	1.0496	7.8896	5	1	Median	1.031	1.1339	15.266	3	0	Plateau	6917000000	3460500000	3456500000	1139800000	535910000	603920000	1715200000	1043700000	671480000	2613900000	1182900000	1431000000	1448100000	697930000	750140000	59494	1057	56044	362723;362724;362725;362726;362727;362728;362729;362730;362731;362732;362733;362734;362735;362736;362737	489658;489659;489660;489661;489662;489663;489664;489665;489666;489667;489668;489669;489670;489671;489672;489673;489674;489675;489676;489677;489678;489679;489680	489659			23	
YNEEERAQQEAEAAQR	0	Unmodified	1920.8562	0.85619589	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			22.984	22.114	3	0.05107	19043	160511_QHF_FH_JSI10i_2	27.43	16.796			1.3476	1.6571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.3476	1.6571	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	34222000	13424000	20798000	0	0	0	34222000	13424000	20798000	0	0	0	0	0	0	59495	4266	56045	362738	489681	489681			1	
YNEESQK	1	Unmodified	896.38758	0.3875758	4627	Q9H0C8	ILKAP	Integrin-linked kinase-associated serine/threonine phosphatase 2C	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			4.6667	4.4276	2	0.015081	2318	160511_QHF_FH_JSI10i_1	57.281	36.127			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59496	4627	56046	362739	489682	489682			1	
YNEETFGYEVPIK	1	Unmodified	1587.7457	0.74568938	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	66.879	66.279	2	6.5305E-05	59959	160511_QHF_FH_JSI10i_1	105.17	90.964			1.104	1.0906	14.791	4	3	Median	1.0788	0.90094	NaN	1	1	Median	0.86817	1.0106	NaN	1	0	Median	1.2657	1.2486	NaN	1	1	Median	1.1297	1.1769	NaN	1	1	Median	615400000	302080000	313320000	144900000	73435000	71463000	139090000	83094000	55999000	178170000	70112000	108060000	153240000	75443000	77796000	59497	2508	56047	362740;362741;362742;362743	489683;489684;489685;489686;489687	489685			5	
YNEETFGYEVPIKEEGDYVLVLK	2	Unmodified	2733.3425	0.34252968	2508	Q14165	MLEC	Malectin	yes	yes	0	0	0	1				By MS/MS	2	0		1											1	95.232	94.689	3	0.025367	81442	160511_QHF_FH_JSI12i_2	26.754	23.226			0.9508	1.0582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9508	1.0582	NaN	1	0	Median	15615000	8098400	7516200	0	0	0	0	0	0	0	0	0	15615000	8098400	7516200	59498	2508	56048	362744	489688	489688			1	
YNELSYK	1	Unmodified	915.4338	0.43379771	4411	Q9BT78	COPS4	COP9 signalosome complex subunit 4	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	21.959	21.177	2	0.030187	17470	160511_QHF_FH_JSI11i_2	54.205	24.632			1.1589	1.1773	37.091	3	3	Median	NaN	NaN	NaN	0	0	Median	1.4675	1.794	NaN	1	1	Median	1.1589	1.1773	NaN	1	1	Median	0.79679	0.85642	NaN	1	1	Median	284200000	128270000	155930000	0	0	0	76550000	29058000	47492000	125010000	55180000	69834000	82633000	44028000	38605000	59499	4411	56049	362745;362746;362747	489689;489690;489691	489690			3	
YNEQHVPGSPFTAR	0	Unmodified	1601.7587	0.7586541	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.18	6.03		8	8						6	4	5	7	6	38.686	35.917	2;3	1.3427E-09	31473	160511_QHF_FH_JSI11i_3	142.89	122.59			0.92763	1.0018	16.649	21	7	Median	1.2828	1.0868	3.9277	4	0	Median	0.83335	1.0163	15.146	5	1	Median	0.88869	0.85531	17.091	7	3	Median	0.97928	1.0018	14.174	5	3	Median	8035100000	4030200000	4004900000	964830000	423930000	540910000	1485800000	718760000	767030000	3265600000	1671500000	1594100000	2318900000	1216000000	1102800000	59500	1192	56050	362748;362749;362750;362751;362752;362753;362754;362755;362756;362757;362758;362759;362760;362761;362762;362763;362764;362765;362766;362767;362768;362769	489692;489693;489694;489695;489696;489697;489698;489699;489700;489701;489702;489703;489704;489705;489706;489707;489708;489709;489710;489711;489712;489713;489714;489715;489716;489717;489718;489719;489720;489721;489722;489723;489724;489725	489695			34	
YNFEMLQQHTVLQGQR	0	Unmodified	1990.9683	0.9683293	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	2	1	69.035	62.906	3	1.0787E-63	34534	160513_QHF_FH_JSI10Kac_6	209.31	200.49			1.1372	1.1023	13.093	6	1	Median	1.5196	1.3121	NaN	1	0	Median	0.95958	1.1276	20.582	2	0	Median	1.1812	1.1023	2.9862	2	0	Median	0.92009	0.98377	NaN	1	1	Median	609210000	295600000	313610000	74408000	24546000	49863000	270350000	149480000	120860000	128040000	56834000	71202000	136420000	64738000	71684000	59501	1822	56051	362770;362771;362772;362773;362774;362775	489726;489727;489728;489729;489730;489731;489732;489733;489734;489735;489736	489736			11	
YNFEMLQQHTVLQGQR	0	Oxidation (M)	2006.9632	0.96324392	1822	P54278	PMS2	Mismatch repair endonuclease PMS2	yes	yes	0	0	1	0	By MS/MS	By MS/MS		By MS/MS	16	0									5	1	2		2	64.486	55.241	3	0.00039848	30550	160513_QHF_FH_JSI10Kac_6	63.631	59.014			1.1461	1.0728	19.674	4	0	Median	1.151	0.98368	NaN	1	0	Median	1.2068	1.4288	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.984	1.0377	16.951	2	0	Median	72994000	33792000	39202000	19278000	9299000	9979400	18371000	6803400	11567000	0	0	0	35345000	17690000	17656000	59502	1822	56051	362776;362777;362778;362779;362780	489737;489738;489739;489740;489741;489742	489740		1505	6	
YNFFTGCPK	1	Unmodified	1132.5012	0.50116577	4321	Q99832	CCT7	T-complex protein 1 subunit eta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.75	5.95	1	4	4						3	3	2	4	3	54.792	51.762	2	0.00011482	45477	160511_QHF_FH_JSI11i_3	92.439	88.327			1.0523	1.0204	35.523	12	1	Median	0.8612	0.73531	16.801	3	0	Median	0.83165	1.0011	19.618	2	0	Median	0.91581	0.88051	28.96	4	1	Median	1.374	1.5002	21.638	3	0	Median	2370400000	1253900000	1116500000	169350000	87386000	81969000	368290000	236150000	132140000	1096100000	614250000	481800000	736660000	316110000	420560000	59503	4321	56052	362781;362782;362783;362784;362785;362786;362787;362788;362789;362790;362791;362792	489743;489744;489745;489746;489747;489748;489749;489750;489751;489752;489753;489754;489755;489756;489757;489758	489743			15	
YNFHGTAEQDLPFCK	1	Unmodified	1825.8094	0.80936904	1517	P41240	CSK	Tyrosine-protein kinase CSK	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	57.71	57.455	3	9.8069E-06	49431	160511_QHF_FH_JSI12i_3	81.526	74.015			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59504	1517	56053	362793	489759	489759			1	
YNFIADVVEK	1	Unmodified	1196.6077	0.60773933	3878	Q92743	HTRA1	Serine protease HTRA1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	1	2	72.64	71.68	2	0.0036451	61822	160511_QHF_FH_JSI12i_2	68.847	49.576			0.74267	0.63556	46.124	5	3	Median	0.74267	0.63556	NaN	1	0	Median	0.3192	0.39486	NaN	1	1	Median	1.0292	1.0355	NaN	1	0	Median	0.83246	0.88781	50.536	2	2	Median	135760000	75155000	60610000	23598000	14565000	9033600	23885000	17212000	6672700	40646000	18823000	21823000	47635000	24554000	23081000	59505	3878	56054	362794;362795;362796;362797;362798	489760;489761;489762;489763;489764	489760			5	
YNFLPEALDFVGVHQER	0	Unmodified	2033.0007	0.0006752871	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	100.78	100.79	3	1.1307E-06	87400	160511_QHF_FH_JSI12i_3	104.88	96.411			1.0457	1.0139	0.57726	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0913	1.018	NaN	1	1	Median	1.0021	1.0097	NaN	1	0	Median	161100000	81978000	79125000	0	0	0	0	0	0	79071000	36192000	42879000	82033000	45786000	36246000	59506	2925	56055	362799;362800	489765;489766	489766			2	
YNFPLVTLYATLGK	1	Unmodified	1598.8708	0.87083031	418	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.2	6.46			4						5	3	3	2	1	98.592	94.868	2	1.5592E-10	49020	160513_QHF_FH_JSI11Kac_6	127.17	108.91			0.98684	0.89372	11.284	8	4	Median	1.0569	0.86292	6.798	3	2	Median	0.66816	0.76969	11.46	3	2	Median	1.0151	0.96739	NaN	1	0	Median	0.99889	1.0308	NaN	1	0	Median	1511400000	792890000	718490000	325480000	168150000	157340000	517410000	293360000	224050000	188180000	93258000	94919000	480320000	238130000	242180000	59507	418	56056	362801;362802;362803;362804;362805;362806;362807;362808;362809	489767;489768;489769;489770;489771;489772;489773;489774;489775;489776;489777;489778;489779	489771			13	
YNFPNPNPFVEDDMDK	1	Unmodified	1940.8251	0.82507869	282	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	81.056	80.586	2	4.1559E-08	71592	160511_QHF_FH_JSI9i_1	135.6	130.52			0.80795	0.80212	11.272	4	2	Median	1.124	0.89483	NaN	1	1	Median	0.62887	0.7076	NaN	1	1	Median	0.79771	0.74605	NaN	1	0	Median	0.81832	0.8624	NaN	1	0	Median	146600000	79004000	67597000	25461000	9675100	15786000	33510000	20344000	13167000	49833000	25406000	24427000	37796000	23579000	14218000	59508	282	56057	362810;362811;362812;362813	489780;489781;489782;489783;489784;489785;489786	489786			7	
YNFPVEVEVPMER	0	Unmodified	1607.7654	0.76537896	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	4	4	4							3	3	4	2	84.165	83.509	2	5.2017E-16	75879	160511_QHF_FH_JSI10i_1	167.6	152.62			1.0322	1.0087	15.343	11	2	Median	1.2392	1.0531	10.111	3	0	Median	0.84941	0.98433	25.864	3	1	Median	1.0638	1.0381	3.5047	3	1	Plateau	0.96828	1.0457	5.0928	2	0	Median	1841300000	921120000	920170000	276780000	125960000	150820000	559060000	298320000	260740000	546020000	268310000	277710000	459440000	228540000	230900000	59509	2094	56058	362814;362815;362816;362817;362818;362819;362820;362821;362822;362823;362824;362825	489787;489788;489789;489790;489791;489792;489793;489794;489795;489796;489797;489798;489799;489800;489801;489802;489803;489804;489805;489806;489807;489808	489797			22	
YNFPVEVEVPMER	0	Oxidation (M)	1623.7603	0.76029359	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0			By MS/MS	By MS/MS	1.5	0.5	1	1										1	1	75.416	74.633	2	0.024658	67843	160511_QHF_FH_JSI11i_1	61.435	46.169			1.2964	1.3297	66.307	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.85606	0.83204	NaN	1	1	Median	1.9631	2.1251	NaN	1	1	Median	48752000	20702000	28049000	0	0	0	0	0	0	17440000	10471000	6968200	31312000	10231000	21081000	59510	2094	56058	362826;362827	489809;489810	489809			2	
YNFPVEVEVPMERK	1	Unmodified	1735.8603	0.86034198	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			73.777	73.015	3	0.0011033	64921	160511_QHF_FH_JSI10i_2	56.473	48.16			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59511	2094	56059	362828	489811	489811			1	
YNFRFEEPDSASVK	1	Unmodified	1687.7842	0.78420015	3580	Q8N9T8	KRI1	Protein KRI1 homolog	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			54.41	52.852	3	0.016908	44160	160511_QHF_FH_JSI10i_3	44.567	31.154			1.3783	1.5958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3783	1.5958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	69363000	31575000	37788000	0	0	0	69363000	31575000	37788000	0	0	0	0	0	0	59512	3580	56060	362829	489812	489812			1	
YNGEPEHIER	0	Unmodified	1242.5629	0.56291441	2571	Q14739	LBR	Lamin-B receptor	yes	yes	0	0	0	0	By MS/MS		By matching	By MS/MS	2	0		3								1		1	1	13.559	13.003	3	0.018372	10349	160511_QHF_FH_JSI12i_2	23.028	13.34			1.063	1.2156	13.713	3	0	Plateau	1.063	0.9289	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2037	1.2156	NaN	1	0	Median	1.0127	1.1129	NaN	1	0	Median	215530000	101680000	113850000	45708000	22963000	22745000	0	0	0	109530000	51606000	57925000	60291000	27113000	33178000	59513	2571	56061	362830;362831;362832	489813;489814	489813			2	
YNGGVGR	0	Unmodified	721.35074	0.35073679	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	6.633	6.3714	2	0.015502	4215	160511_QHF_FH_JSI11i_3	64.547	46.853			0.9288	0.9567	16.78	6	0	Median	1.4205	1.224	NaN	1	0	Median	0.9299	1.138	NaN	1	0	Median	0.84659	0.82803	7.2988	2	0	Median	0.90093	0.9567	7.597	2	0	Median	5144600000	2548400000	2596200000	815260000	326470000	488800000	799580000	419440000	380140000	1771400000	913410000	857980000	1758400000	889070000	869290000	59514	1143	56062	362833;362834;362835;362836;362837;362838	489815;489816;489817;489818;489819;489820	489816			6	
YNGLIHR	0	Unmodified	871.46644	0.46643525	1592	P46779	RPL28	60S ribosomal protein L28	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			15.913	14.92	2;3	0.0039309	11747	160511_QHF_FH_JSI9i_3	58.981	44.206			1.2263	1.0589	12.451	4	0	Median	1.3228	1.0589	2.3839	2	0	Median	1.0166	1.181	18.445	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	808330000	383480000	424850000	450370000	208290000	242080000	357950000	175190000	182770000	0	0	0	0	0	0	59515	1592	56063	362839;362840;362841;362842	489821;489822;489823;489824;489825	489823			5	
YNHIDESEMK	1	Unmodified	1264.5394	0.53940177	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	16.801	16.112	2	0.00037669	13052	160511_QHF_FH_JSI12i_2	76.465	60.262			1.1989	1.188	24.076	4	0	Median	1.0727	0.90338	NaN	1	0	Median	0.82683	1.0125	NaN	1	0	Median	1.3724	1.3941	NaN	1	0	Median	1.3401	1.4805	NaN	1	0	Median	373990000	166340000	207650000	72661000	32196000	40465000	83296000	42618000	40678000	140840000	62767000	78078000	77186000	28761000	48426000	59516	3852	56064	362843;362844;362845;362846;362847	489826;489827;489828;489829;489830;489831;489832	489826			6	
YNHIDESEMK	1	Oxidation (M)	1280.5343	0.53431639	3852	Q92598	HSPH1	Heat shock protein 105 kDa	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		16.709	16.116	2	0.0017063	12994	160511_QHF_FH_JSI11i_2	67.704	55.478			0.60959	0.69564	54.615	2	1	Median	NaN	NaN	NaN	0	0	Median	0.36955	0.47278	NaN	1	1	Median	1.0055	1.0235	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	44849000	20056000	24793000	8129500	0	8129500	13339000	9437500	3901700	23380000	10618000	12762000	0	0	0	59517	3852	56064	362848;362849;362850	489833;489834;489835	489834		2306	3	
YNHMLSATVK	1	Unmodified	1162.5805	0.58047873	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	4.93		1	4						1	1	1	2	2	25.218	22.299	2;3	6.1447E-05	18607	160511_QHF_FH_JSI11i_3	80.037	70.849			1.2396	1.2033	48.838	3	1	Plateau	2.4503	2.1463	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8459	1.7181	NaN	1	0	Median	0.8324	0.84269	NaN	1	0	Median	350610000	145750000	204870000	13103000	2231000	10871000	0	0	0	147780000	68722000	79061000	189730000	74793000	114940000	59518	2605	56065	362851;362852;362853;362854;362855;362856	489836;489837;489838;489839;489840;489841	489836			6	
YNHPKPNLLYQK	2	Acetyl (K)	1555.8147	0.81471242	2943	Q5T3I0	GPATCH4	G patch domain-containing protein 4	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By matching	16	0									5	1	1	2	1	50.257	40.859	2;3	0.00045323	22428	160513_QHF_FH_JSI10Kac_6	73.435	46.809			0.83084	0.97469	23.28	5	0	Median	1.3315	1.1344	NaN	1	0	Median	0.83084	0.97469	NaN	1	0	Median	0.69919	0.68512	3.6464	2	0	Median	0.93991	0.99585	NaN	1	0	Median	121590000	64924000	56662000	18738000	8116000	10622000	45977000	30240000	15737000	25677000	10613000	15064000	31195000	15955000	15240000	59519	2943	56066	362857;362858;362859;362860;362861	489842;489843;489844	489843	2720		3	
YNIEKDIAAHIK	2	Acetyl (K)	1455.7722	0.7721789	2054	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.6	0.49								2	3	1	1	2	1	73.314	63.569	3	0.00010932	34444	160513_QHF_FH_JSI11Kac_6	86.467	76.642			0.71445	0.77625	24.649	5	0	Median	0.96563	0.82892	NaN	1	0	Median	0.81598	0.96851	NaN	1	0	Median	0.59033	0.56472	10.833	2	0	Median	0.71445	0.77625	NaN	1	0	Median	93677000	63170000	30508000	12608000	7493400	5114600	5298200	2810000	2488200	53596000	38108000	15487000	22175000	14758000	7417400	59520	2054	56067	362862;362863;362864;362865;362866	489845;489846;489847;489848;489849;489850	489845	2119;2120		6	
YNIELDPR	0	Unmodified	1018.5084	0.50835964	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	46.581	45.809	2	0.0024625	39430	160511_QHF_FH_JSI11i_2	79.906	44.026			1.0123	1.0388	17.583	7	1	Median	1.0123	0.86644	NaN	1	0	Median	0.83601	0.99695	34.122	2	0	Median	1.0607	1.0399	4.6843	2	1	Median	1.0447	1.1353	12.569	2	0	Median	757170000	288150000	469020000	119360000	24721000	94641000	171250000	85908000	85338000	196410000	97086000	99323000	270160000	80439000	189720000	59521	2076	56068	362867;362868;362869;362870;362871;362872;362873;362874	489851;489852;489853;489854;489855;489856;489857;489858;489859	489858			9	
YNIEVVCEYIVK	1	Unmodified	1527.7643	0.76431633	1508	P41091;Q2VIR3	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	yes	no	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.4	0.49	3	2									2	1	2	82.244	81.758	2	2.9942E-06	74670	160511_QHF_FH_JSI12i_1	100.88	86.459			2.1343	2.1681	79.536	4	3	Median	NaN	NaN	NaN	0	0	Median	2.0397	2.4418	114.66	2	1	Median	3.6165	3.6961	NaN	1	1	Median	1.2595	1.2718	NaN	1	1	Median	404710000	88565000	316140000	0	0	0	248070000	45638000	202430000	138850000	35168000	103680000	17784000	7758900	10025000	59522	1508	56069	362875;362876;362877;362878;362879	489860;489861;489862;489863;489864;489865	489862			6	
YNIIPVLSDILQESVK	1	Unmodified	1830.0139	0.013865735	5321	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	yes	yes	0	0	0	0		By matching		By MS/MS	2	0		2									1		1	102.81	102.7	3	6.6012E-06	88629	160511_QHF_FH_JSI12i_2	85.619	74.505			0.59708	0.6843	29.049	2	0	Median	NaN	NaN	NaN	0	0	Median	0.68257	0.84034	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.5223	0.55724	NaN	1	0	Median	23548000	15183000	8365300	0	0	0	9338500	4907800	4430700	0	0	0	14210000	10275000	3934600	59523	5321	56070	362880;362881	489866	489866			1	
YNILGTNAIMDK	1	Oxidation (M)	1367.6755	0.67550132	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	1	0	By MS/MS			By MS/MS	1.67	0.471	1	2								1			2	67.615	66.678	2	0.0025183	60905	160511_QHF_FH_JSI12i_1	83	63.729			2.0561	2.2607	2.4326	3	3	Plateau	2.4864	2.1871	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.1449	2.277	1.0129	2	2	Median	424630000	117660000	306970000	127110000	30735000	96378000	0	0	0	0	0	0	297520000	86925000	210590000	59524	4442	56071	362882;362883;362884	489867;489868;489869	489868		2473	3	
YNILGTNAIMDK	1	Unmodified	1351.6806	0.6805867	4442	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2	0		2								1	1			68.798	67.951	2	1.4719E-05	60351	160511_QHF_FH_JSI10i_2	127.87	103.71			0.68189	0.69105	15.594	2	2	Median	0.91504	0.77161	NaN	1	1	Median	0.50814	0.6189	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151520000	88163000	63361000	61383000	29787000	31596000	90141000	58376000	31765000	0	0	0	0	0	0	59525	4442	56071	362885;362886	489870;489871	489871			2	
YNILGTNTIMDK	1	Unmodified	1381.6912	0.69115139	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.38	4	4	4				1	4	2	4	5	5	5	70.464	66.566	2	1.551E-31	57910	160511_QHF_FH_JSI12i_2	192.1	167.17			1.002	0.89641	24.326	18	1	Median	1.0156	0.85435	5.8704	4	0	Median	0.71625	0.85185	20.866	4	0	Median	1.0703	1.0435	28.404	5	0	Median	0.78874	0.86695	34.066	5	1	Median	12437000000	6059900000	6377400000	1840200000	980170000	859980000	2625400000	1394200000	1231200000	5010000000	2218100000	2791900000	2961700000	1467400000	1494300000	59526	2161	56072	362887;362888;362889;362890;362891;362892;362893;362894;362895;362896;362897;362898;362899;362900;362901;362902;362903;362904;362905	489872;489873;489874;489875;489876;489877;489878;489879;489880;489881;489882;489883;489884;489885;489886;489887;489888;489889;489890;489891;489892;489893;489894;489895;489896;489897;489898;489899;489900;489901;489902;489903;489904;489905	489878			34	
YNILGTNTIMDK	1	Oxidation (M)	1397.6861	0.68606601	2161	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.2	6.18		5	1				1	3		1	3	4	2	59.644	54.399	2	6.3572E-05	47184	160511_QHF_FH_JSI11i_2	101.93	89.34			0.70595	0.33372	80.721	9	4	Plateau	0.33216	0.28186	NaN	1	1	Median	0.49102	0.60497	49.645	2	1	Median	1.3069	0.38137	68.798	4	1	Linear	0.40159	0.44777	140.45	2	1	Median	1183100000	975040000	208070000	200450000	170210000	30242000	179510000	148740000	30766000	398290000	307500000	90789000	404860000	348580000	56272000	59527	2161	56072	362906;362907;362908;362909;362910;362911;362912;362913;362914;362915	489906;489907;489908;489909;489910;489911;489912;489913;489914;489915;489916	489910		1809	11	
YNIMAFNAADK	1	Unmodified	1256.586	0.58595803	1432	P35269	GTF2F1	General transcription factor IIF subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	60.068	59.154	2	0.016001	50670	160511_QHF_FH_JSI12i_2	42.718	16.025			1.2091	1.2977	22.47	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0835	1.1071	NaN	1	0	Median	1.3492	1.5212	NaN	1	0	Median	112610000	49003000	63602000	0	0	0	0	0	0	57596000	26502000	31094000	55010000	22501000	32509000	59528	1432	56073	362916;362917	489917;489918	489917			2	
YNIMLVR	0	Unmodified	907.49496	0.49495818	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.29	6.43		4	4				1	4	4	4	4	5	4	58.754	52.969	2	3.1112E-07	29074	160513_QHF_FH_JSI10Kac_6	144.29	54.621			1.0149	1.0032	18.431	17	0	Median	1.2339	1.0471	6.8428	4	0	Median	0.80789	0.96584	8.9603	4	0	Median	0.89146	0.89291	28.155	5	0	Median	0.96268	1.0482	15.675	4	0	Median	5574300000	2799800000	2774500000	1015500000	484540000	531000000	1497300000	838910000	658350000	1871800000	931590000	940220000	1189700000	544770000	644950000	59529	1721	56074	362918;362919;362920;362921;362922;362923;362924;362925;362926;362927;362928;362929;362930;362931;362932;362933;362934	489919;489920;489921;489922;489923;489924;489925;489926;489927;489928;489929;489930;489931;489932;489933;489934;489935;489936;489937;489938;489939;489940;489941;489942;489943;489944	489944			26	
YNIMLVR	0	Oxidation (M)	923.48987	0.48987281	1721	P50990	CCT8	T-complex protein 1 subunit theta	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.8	0.4								1	4	2	1	1	1	54.433	44.839	2	0.019458	23760	160513_QHF_FH_JSI9Kac_6	66.087	41.236			1.0051	0.99175	3.4269	5	0	Median	1.1893	1.0028	1.5712	2	0	Median	0.84508	0.99175	NaN	1	0	Median	1.0042	0.96997	NaN	1	0	Median	1.0051	1.0616	NaN	1	0	Median	460720000	225190000	235530000	159580000	69310000	90272000	118500000	63797000	54701000	103580000	53125000	50454000	79058000	38956000	40102000	59530	1721	56074	362935;362936;362937;362938;362939	489945;489946;489947	489946		1404	3	
YNIPHGPVVGSTR	0	Unmodified	1395.7259	0.72589741	1703	P50402	EMD	Emerin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			2.75	0.433		1	3							2	2			38.653	37.281	2;3	0.00022228	31115	160511_QHF_FH_JSI10i_3	64.798	55.511			1.3836	1.3647	5.8902	4	4	Median	1.6693	1.3971	9.5659	2	2	Median	1.1567	1.3647	2.6591	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1296800000	552530000	744230000	650170000	261810000	388360000	646590000	290710000	355870000	0	0	0	0	0	0	59531	1703	56075	362940;362941;362942;362943	489948;489949;489950;489951	489948			4	
YNKDGSVAIASK	2	Acetyl (K)	1293.6565	0.65648044	1865	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	40.995	32.075	2	0.0048911	18029	160513_QHF_FH_JSI12Kac_3	63.408	44.137			0.83953	0.93909	26.3	3	0	Median	NaN	NaN	NaN	0	0	Median	0.83953	0.98523	NaN	1	0	Median	0.61346	0.6111	NaN	1	0	Median	0.86101	0.93909	NaN	1	0	Median	16219000	9405900	6813600	0	0	0	5126000	2987800	2138300	5327400	3291200	2036200	5766000	3126800	2639100	59532	1865	56076	362944;362945;362946	489952;489953	489952	1877;1882		2	
YNKPAFLK	2	Unmodified	979.5491	0.54910224	4896	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			29.506	28.126	3	0.013947	23365	160511_QHF_FH_JSI10i_3	41.029	7.2325			1.215	0.98945	124.98	2	2	Median	1.215	0.98945	124.98	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203940000	80130000	123810000	203940000	80130000	123810000	0	0	0	0	0	0	0	0	0	59533	4896	56077	362947;362948;362949	489954;489955;489956	489954			3	
YNLAVVWLR	0	Unmodified	1132.6393	0.63931423	5675	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									2			1	1	84.166	74.787	2	4.7665E-05	41324	160513_QHF_FH_JSI11Kac_6	121.99	80.337			0.83194	0.83738	2.2733	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88697	0.85095	NaN	1	0	Median	0.78032	0.82403	NaN	1	1	Median	166290000	94173000	72120000	0	0	0	0	0	0	113250000	62172000	51078000	53042000	32001000	21042000	59534	5675	56078	362950;362951	489957;489958	489957			2	
YNLDASEEEDSNK	1	Unmodified	1512.6216	0.62161108	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.43	5.42	5					2				1	2	2	2	28.401	25.566	2	8.6622E-82	22214	160511_QHF_FH_JSI9i_1	240.85	227.15			0.90668	0.86382	37.553	7	5	Median	0.85881	0.70553	NaN	1	0	Median	0.78405	0.93	50.818	2	2	Median	1.1139	1.0671	29.891	2	1	Median	1.0251	1.0981	58.725	2	2	Median	1000000000	502110000	497920000	186960000	80334000	106630000	442640000	250670000	191960000	152650000	77604000	75048000	217780000	93496000	124290000	59535	657	56079	362952;362953;362954;362955;362956;362957;362958	489959;489960;489961;489962;489963;489964;489965;489966;489967	489965			9	
YNLDASEEEDSNKK	2	Unmodified	1640.7166	0.71657409	657	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS				1	0	1									1				21.812	20.629	3	0.002624	17506	160511_QHF_FH_JSI9i_1	48.405	41.968			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59536	657	56080	362959	489968	489968			1	
YNLDFWRK	1	Unmodified	1140.5716	0.5716286	2460	Q13630	TSTA3	GDP-L-fucose synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							2	1	1	2	60.779	59.815	3	0.00029499	50271	160511_QHF_FH_JSI10i_3	82.426	68.219			0.98693	0.87021	21.559	5	2	Median	1.0068	0.83563	5.734	2	1	Median	0.84268	0.98336	NaN	1	0	Median	1.2542	1.1646	NaN	1	0	Median	0.66109	0.65583	NaN	1	1	Median	228780000	111210000	117580000	53517000	27013000	26503000	62675000	36267000	26408000	85824000	34883000	50941000	26766000	13043000	13723000	59537	2460	56081	362960;362961;362962;362963;362964;362965	489969;489970;489971;489972;489973;489974;489975;489976;489977;489978	489973			10	
YNLGLDLR	0	Unmodified	962.51853	0.5185304	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.14	0.639	1	4	2							2	3	1	1	61.003	59.991	2	0.00091687	52114	160511_QHF_FH_JSI11i_2	96.492	17.023			0.88634	1.0459	15.26	7	2	Median	1.1474	0.9835	13.292	2	2	Median	0.85511	1.0459	22.889	3	0	Median	1.0601	1.0598	NaN	1	0	Median	0.87383	0.96876	NaN	1	0	Median	724140000	379060000	345080000	133450000	57980000	75466000	173520000	97547000	75970000	240880000	130210000	110670000	176290000	93323000	82968000	59538	762	56082	362966;362967;362968;362969;362970;362971;362972	489979;489980;489981;489982;489983;489984;489985	489984			7	
YNLIAVSNHYGGMGGGHYTAFAK	1	Unmodified	2427.143	0.1429992	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	2	3	2	71.56	63.771	3;4	1.1937E-61	34972	160513_QHF_FH_JSI10Kac_6	202.73	191.43			0.77566	0.84894	45.313	9	1	Median	1.3262	1.1333	28.634	2	0	Median	0.70972	0.83148	13.095	2	0	Median	0.89184	0.84894	70.972	3	1	Median	0.73487	0.7886	3.4611	2	0	Median	785040000	475610000	309430000	125560000	61335000	64221000	241590000	131370000	110210000	297770000	206950000	90816000	120130000	75948000	44180000	59539	5626	56083	362973;362974;362975;362976;362977;362978;362979;362980;362981;362982	489986;489987;489988;489989;489990;489991;489992;489993;489994;489995;489996;489997;489998;489999;490000;490001;490002;490003	490001			18	
YNLIAVSNHYGGMGGGHYTAFAK	1	Oxidation (M)	2443.1379	0.13791382	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	1	0	By MS/MS	By MS/MS			16	0									2	1	1			65.62	57.119	4	3.4509E-08	31360	160513_QHF_FH_JSI10Kac_6	78.354	70.55			1.1218	1.115	16.934	2	0	Median	1.4715	1.2569	NaN	1	0	Median	0.85522	0.98918	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	81136000	40581000	40555000	25145000	11022000	14123000	55991000	29559000	26433000	0	0	0	0	0	0	59540	5626	56083	362983;362984	490004;490005;490006	490006		2717	3	
YNLIVVGR	0	Unmodified	932.54435	0.54435122	3826	Q92466	DDB2	DNA damage-binding protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		15.8	0.433								1	3	2	1	1		60.886	51.408	2	0.0065668	28241	160513_QHF_FH_JSI10Kac_6	74.929	51.354			0.75758	0.88293	12.385	4	1	Linear	1.1878	0.99523	16.216	2	0	Median	0.74699	0.87847	NaN	1	0	Median	0.8793	0.85388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	124100000	63011000	61084000	29448000	13887000	15561000	49189000	24475000	24714000	45459000	24650000	20809000	0	0	0	59541	3826	56084	362985;362986;362987;362988	490007;490008	490008			2	
YNLKPIPLK	2	Unmodified	1084.6645	0.66446635	4206	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			8							2	2	2	2	46.212	45.359	2;3	0.0018899	39575	160511_QHF_FH_JSI11i_3	57.59	37.069			0.7387	0.69301	15.909	4	4	Median	0.82008	0.65072	NaN	1	1	Median	0.66539	0.73806	NaN	1	1	Median	0.93044	0.87178	NaN	1	1	Median	0.5901	0.60677	NaN	1	1	Median	508510000	265350000	243160000	168980000	79172000	89810000	20701000	13303000	7398000	118340000	56419000	61923000	200480000	116460000	84027000	59542	4206	56085	362989;362990;362991;362992;362993;362994;362995;362996	490009;490010;490011;490012;490013;490014;490015;490016	490010			8	
YNLNSHPPLNVLEQATIK	1	Unmodified	2050.0847	0.084739268	641	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		75.716	75.716	3	0.0013119	67666	160511_QHF_FH_JSI11i_3	52.295	43.476			1.0872	1.0206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0872	1.0206	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	45689000	23945000	21744000	0	0	0	0	0	0	45689000	23945000	21744000	0	0	0	59543	641	56086	362997	490017	490017			1	
YNLPESAPLIYNSFAQFLVK	1	Unmodified	2313.2045	0.20452005	2970	Q5TFE4	NT5DC1	5'-nucleotidase domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By matching	By matching	By MS/MS	4.8	5.6		4							1	1	1	1	2	101.66	99.69	3	3.3889E-10	88360	160511_QHF_FH_JSI12i_2	116.6	103.18			0.8518	0.83725	13.068	5	1	Median	0.8518	0.73397	NaN	1	1	Median	0.55207	0.68549	NaN	1	0	Median	0.8554	0.84725	NaN	1	0	Median	0.82441	0.89499	9.4319	2	0	Median	368330000	194720000	173600000	43324000	20275000	23049000	60099000	37151000	22948000	101700000	54831000	46865000	163210000	82466000	80740000	59544	2970	56087	362998;362999;363000;363001;363002	490018;490019;490020	490018			2	
YNLQEVVK	1	Unmodified	991.53385	0.53384611	5107	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									3	1	2	42.736	41.964	2	0.0021469	35998	160511_QHF_FH_JSI11i_2	89.698	59.513			0.97541	1.0414	26.648	5	2	Median	NaN	NaN	NaN	0	0	Median	1.0397	1.2386	31.353	2	1	Median	0.97541	1.0102	NaN	1	0	Median	1.2249	1.345	36.178	2	1	Median	266810000	146080000	120730000	0	0	0	83129000	48704000	34425000	92273000	49350000	42924000	91405000	48028000	43377000	59545	5107	56088	363003;363004;363005;363006;363007;363008	490021;490022;490023;490024;490025;490026	490026			6	
YNLQLINALVLYVGTQAIAHIHNK	1	Unmodified	2705.5017	0.50170513	21	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	98.958	90.53	4	4.7734E-53	51639	160513_QHF_FH_JSI9Kac_6	187.19	174.96			0.77067	0.77615	50.079	4	0	Median	0.80523	0.68361	NaN	1	0	Median	0.7376	0.88121	NaN	1	0	Median	1.6496	1.5844	NaN	1	0	Median	0.46008	0.4829	NaN	1	0	Median	1785300000	965750000	819570000	415750000	182870000	232880000	624510000	402790000	221720000	536420000	238500000	297920000	208630000	141580000	67054000	59546	21	56089	363009;363010;363011;363012	490027;490028;490029;490030;490031;490032;490033;490034	490030			8	
YNLSQPSEAPPLAVHDEAEK	1	Unmodified	2194.0542	0.054227	1213	P22670	RFX1	MHC class II regulatory factor RFX1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.686	53.168	3	0.0005995	45959	160511_QHF_FH_JSI11i_2	51.487	42.555			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59547	1213	56090	363013	490035	490035			1	
YNLYTAEGK	1	Unmodified	1057.508	0.50802529	3576	Q8N9N2	ASCC1	Activating signal cointegrator 1 complex subunit 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	30.949	30.101	2	0.0016682	25424	160511_QHF_FH_JSI12i_2	76.827	59.441			1.2345	1.2759	14.154	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3989	1.4102	NaN	1	1	Median	1.0894	1.1544	NaN	1	1	Median	47344000	24799000	22545000	0	0	0	0	0	0	23942000	11963000	11979000	23402000	12836000	10566000	59548	3576	56091	363014;363015	490036;490037	490036			2	
YNNFQMHLDR	0	Unmodified	1336.5983	0.59825406	614	O94855	SEC24D	Protein transport protein Sec24D	yes	yes	0	0	0	0		By matching	By MS/MS	By matching	3	0			3								1	1	1	36.992	36.452	3	0.01004	31910	160511_QHF_FH_JSI11i_3	37.18	27.858			0.79465	0.74519	43.402	3	0	Median	NaN	NaN	NaN	0	0	Median	1.3321	1.5558	NaN	1	0	Median	0.79465	0.74519	NaN	1	0	Median	0.73923	0.72289	NaN	1	0	Median	124380000	67373000	57004000	0	0	0	25182000	12941000	12240000	53845000	31853000	21991000	45351000	22578000	22773000	59549	614	56092	363016;363017;363018	490038	490038			1	
YNNPAMLHNIDQEMLK	1	Unmodified	1929.9077	0.90770288	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		2										2		62.777	62.255	2;3	3.5592E-07	54194	160511_QHF_FH_JSI11i_2	148.68	138.13			1.5156	1.5561	32.277	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5156	1.5561	32.277	2	2	Median	NaN	NaN	NaN	0	0	Median	431660000	121670000	309980000	0	0	0	0	0	0	431660000	121670000	309980000	0	0	0	59550	5448	56093	363019;363020	490039;490040	490039			2	
YNPENLATLER	0	Unmodified	1318.6517	0.65172941	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	5.57	5.97	1	4						2		1	1	3	2	54.055	50.348	2	0.00028702	43147	160511_QHF_FH_JSI12i_2	91.867	72.09			1.1559	1.1458	22.743	7	0	Median	2.1054	1.7973	NaN	1	0	Median	1.4471	1.7739	NaN	1	0	Median	1.0616	1.0748	11.465	3	0	Plateau	1.0038	1.1042	1.5401	2	0	Median	1033200000	494400000	538800000	155140000	65480000	89656000	131010000	53104000	77905000	526600000	254050000	272550000	220460000	121770000	98689000	59551	5247	56094	363021;363022;363023;363024;363025;363026;363027	490041;490042;490043;490044;490045;490046	490043			5	
YNPENNTWTLIAPMNVAR	0	Unmodified	2103.0208	0.020758802	5754	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.75	0.433		1	3								1	1	2	89.998	89.705	2	0.00014731	77887	160511_QHF_FH_JSI12i_3	72.937	64.207			1.069	1.2532	19.767	2	1	Median	NaN	NaN	NaN	0	0	Median	0.86239	1.0898	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.325	1.4412	NaN	1	1	Median	20342000	12373000	7968800	0	0	0	11679000	6870800	4808400	0	0	0	8662800	5502400	3160400	59552	5754	56095	363028;363029;363030;363031	490047;490048;490049;490050	490050			4	
YNPLQDEWVLVSAHR	0	Unmodified	1825.9111	0.911132	881	P07902	GALT	Galactose-1-phosphate uridylyltransferase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	80.923	80.923	3	4.6251E-08	70313	160511_QHF_FH_JSI12i_3	77.562	69.202			0.82385	0.76665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82385	0.76665	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	38389000	17507000	20881000	0	0	0	0	0	0	38389000	17507000	20881000	0	0	0	59553	881	56096	363032;363033	490051;490052	490052			2	
YNPNVLPVQCTGK	1	Unmodified	1488.7395	0.73949856	822	P05026	ATP1B1	Sodium/potassium-transporting ATPase subunit beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.17	0.373	5	1								1	2	2	1	47.766	47.139	2	8.5669E-05	41888	160511_QHF_FH_JSI9i_1	113.47	101.26			1.232	1.2166	44.248	5	3	Median	1.5562	1.3253	NaN	1	0	Median	0.9893	1.1651	NaN	1	1	Median	1.0822	1.0565	19.948	2	2	Median	2.7429	2.9369	NaN	1	0	Median	351790000	162190000	189600000	36819000	18958000	17861000	52513000	28585000	23928000	170430000	84292000	86140000	92024000	30355000	61669000	59554	822	56097	363034;363035;363036;363037;363038;363039	490053;490054;490055;490056;490057;490058	490057			5	
YNPPDHDVVAMAR	0	Unmodified	1483.6878	0.68779734	1259	P25440	BRD2	Bromodomain-containing protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2.67	0.471		1	2									2	1	37.199	36.997	3	0.00048808	31443	160511_QHF_FH_JSI12i_3	58.32	50.592			1.3406	1.261	46.08	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.88012	0.84648	56.46	2	0	Median	1.3406	1.261	NaN	1	0	Median	106900000	52923000	53982000	0	0	0	0	0	0	74666000	37856000	36810000	32239000	15067000	17171000	59555	1259	56098	363040;363041;363042	490059;490060;490061	490061			2	
YNPPDHEVVAMAR	0	Unmodified	1497.7034	0.70344741	457;2622	O60885;Q15059	BRD4;BRD3	Bromodomain-containing protein 4;Bromodomain-containing protein 3	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.44	0.497		5	4							1	1	5	2	36.533	35.97	2;3	1.3262E-05	31488	160511_QHF_FH_JSI11i_3	109	97.021			1.1141	1.1224	13.441	7	1	Median	1.1141	0.94688	NaN	1	0	Median	0.76998	0.93299	NaN	1	0	Median	1.1308	1.0884	3.6011	3	0	Plateau	1.2069	1.2784	10.26	2	1	Median	499900000	236690000	263210000	60603000	30816000	29787000	75658000	43994000	31664000	210010000	92461000	117550000	153620000	69420000	84203000	59556	457;2622	56099	363043;363044;363045;363046;363047;363048;363049;363050;363051	490062;490063;490064;490065;490066;490067;490068;490069;490070;490071;490072;490073;490074	490063			12	
YNPTWHCIVGR	0	Unmodified	1401.6612	0.66118866	2054;4072	P63167;Q96FJ2	DYNLL1;DYNLL2	Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic	no	no	0	0	0	0		By MS/MS			16	0									1		1			53.722	45.139	3	0.0017135	24854	160513_QHF_FH_JSI10Kac_6	54.471	45.517			0.7785	0.92428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7785	0.92428	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	10827000	5828800	4997700	0	0	0	10827000	5828800	4997700	0	0	0	0	0	0	59557	2054;4072	56100	363052	490075	490075			1	
YNQLLRIEEELGSK	1	Unmodified	1690.889	0.88899957	854	P06733	ENO1	Alpha-enolase	yes	yes	0	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							1	2	1	2	71.766	71.155	3	0.00019051	63427	160511_QHF_FH_JSI10i_2	65.374	51.628			0.62834	0.69906	132.14	6	3	Median	1.0543	0.90417	NaN	1	0	Median	0.92458	1.1171	33.494	2	0	Median	0.042421	0.039553	NaN	1	1	Median	0.34028	0.34411	67.442	2	2	Median	656710000	507350000	149360000	37415000	21999000	15416000	137520000	86536000	50982000	147440000	141300000	6147000	334330000	257520000	76812000	59558	854	56101	363053;363054;363055;363056;363057;363058	490076;490077;490078;490079;490080	490078			5	
YNQMDSTEDAQEEFGWK	1	Unmodified	2076.8371	0.83709994	4316	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	61.769	61.277	2	1.1726E-97	55569	160511_QHF_FH_JSI11i_1	255.45	255.45			1.1151	1.0339	7.0984	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.88815	1.0339	NaN	1	0	Median	1.0094	0.99166	NaN	1	0	Median	1.1151	1.1388	NaN	1	0	Median	136150000	69985000	66162000	0	0	0	39556000	18361000	21195000	41580000	22627000	18952000	55011000	28996000	26015000	59559	4316	56102	363059;363060;363061	490081;490082;490083;490084;490085;490086;490087	490081			7	
YNQPFFVTSLPDDK	1	Unmodified	1669.7988	0.79878758	1316	P29144	TPP2	Tripeptidyl-peptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1								1	1	1	2	77.35	76.722	2	0.00097498	66403	160511_QHF_FH_JSI12i_2	83.314	67.775			1.0877	1.0637	10.902	4	3	Median	1.2612	1.0358	NaN	1	1	Median	0.88108	1.0491	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0877	1.1876	13.625	2	1	Median	348510000	167430000	181080000	38438000	17339000	21098000	75951000	42435000	33516000	123660000	47658000	76003000	110460000	59997000	50467000	59560	1316	56103	363062;363063;363064;363065;363066	490088;490089;490090;490091	490088			4	
YNRDANVSGTLVSSSTLEK	1	Unmodified	2040.0124	0.012362185	4130	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			45.573	43.991	3	5.3056E-05	36605	160511_QHF_FH_JSI10i_3	68.82	59.405			0.55675	0.53183	39.317	2	0	Median	0.8775	0.70229	NaN	1	0	Median	0.35325	0.40275	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60088000	42351000	17738000	24429000	15195000	9234200	35659000	27156000	8503400	0	0	0	0	0	0	59561	4130	56104	363067;363068	490092;490093;490094;490095;490096;490097;490098;490099	490093			8	
YNRDFESHITSYK	1	Unmodified	1658.7689	0.76888444	40	Q99613;B5ME19	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	yes	no	0	0	0	1	By MS/MS	By MS/MS			3	0			5							3	2			35.395	33.953	3	3.3245E-07	28485	160511_QHF_FH_JSI10i_3	88.552	77.908			1.2355	1.0898	20.391	4	1	Median	1.1159	0.89976	24.497	3	0	Plateau	0.92978	1.0545	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	151690000	62957000	88729000	128350000	52094000	76253000	23339000	10863000	12476000	0	0	0	0	0	0	59562	40	56105	363069;363070;363071;363072;363073	490100;490101;490102;490103;490104;490105	490101			6	
YNREGDLLFTVAK	1	Unmodified	1524.7936	0.79364262	2391	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.36	5.91		2	6						3	4	3	2	2	60.598	57.536	2;3	2.8269E-05	48246	160511_QHF_FH_JSI10i_3	89.013	74.755			1.0475	1.0166	24.932	11	0	Median	1.2487	1.0808	29.646	4	0	Median	0.9969	1.1669	19.181	3	0	Median	1.0385	0.99064	3.6559	2	0	Median	0.76958	0.79437	6.749	2	0	Median	1404500000	612660000	791850000	220110000	83905000	136200000	276530000	121840000	154690000	740260000	322110000	418150000	167610000	84805000	82807000	59563	2391	56106	363074;363075;363076;363077;363078;363079;363080;363081;363082;363083;363084	490106;490107;490108;490109;490110;490111;490112;490113;490114;490115;490116;490117;490118;490119;490120	490109			14	
YNSEVVDK	1	Unmodified	952.45018	0.45017606	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		13.131	12.705	2	0.025863	10347	160511_QHF_FH_JSI10i_1	52.482	31.328			1.33	1.1689	24.307	3	1	Plateau	1.4151	1.1689	NaN	1	0	Median	0.63704	0.75133	NaN	1	1	Median	1.1481	1.1168	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	513080000	219050000	294030000	154170000	65548000	88623000	215500000	77699000	137800000	143410000	75798000	67608000	0	0	0	59564	387	56107	363085;363086;363087	490121;490122	490122			2	
YNSHSLENESIK	1	Unmodified	1419.663	0.66302238	2426	Q13496	MTM1	Myotubularin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		20.589	20.589	2	0.013211	17302	160511_QHF_FH_JSI11i_3	45.368	25.581			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59565	2426	56108	363088	490123	490123			1	
YNSMEDAK	1	Unmodified	956.39095	0.39094662	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	9.3082	8.9427	2	0.00027425	6674	160511_QHF_FH_JSI11i_1	114.28	88.172			1.1653	1.1543	24.774	4	0	Median	1.075	0.88929	NaN	1	0	Median	0.92601	1.0975	NaN	1	0	Median	1.2633	1.2141	NaN	1	0	Median	1.5549	1.614	NaN	1	0	Median	2343200000	1231900000	1111300000	491560000	257580000	233980000	751980000	439920000	312050000	589670000	318440000	271230000	509970000	215960000	294010000	59566	3603	56109	363089;363090;363091;363092	490124;490125;490126;490127;490128;490129;490130	490124			7	
YNSMEDAK	1	Oxidation (M)	972.38586	0.38586124	3603	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	yes	yes	0	0	1	0		By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3					2	2	3	6.556	3.288	2	0.010747	1951	160513_QHF_FH_JSI11Kac_3	61.962	50.241			1.1206	1.1857	27.558	7	0	Median	NaN	NaN	NaN	0	0	Median	0.63507	0.74216	7.5627	2	0	Median	1.4164	1.3923	12.834	2	0	Median	1.1206	1.1857	5.2783	3	0	Median	585850000	305610000	280240000	0	0	0	160630000	96144000	64490000	117600000	56029000	61569000	307620000	153440000	154180000	59567	3603	56109	363093;363094;363095;363096;363097;363098;363099	490131;490132;490133;490134;490135	490133		2272	5	
YNSMPVPGPNGTILMETHK	1	Unmodified	2085.0023	0.002331546	290	O15431	SLC31A1	High affinity copper uptake protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.039	65.138	3	3.0181E-06	56761	160511_QHF_FH_JSI11i_2	89.668	84.564			0.7811	0.80469	13.84	4	0	Median	0.82748	0.70495	NaN	1	0	Median	0.63775	0.78391	NaN	1	0	Median	0.99303	0.98212	NaN	1	0	Median	0.73732	0.82603	NaN	1	0	Median	326370000	181700000	144670000	65466000	37734000	27732000	89471000	46710000	42761000	101480000	53061000	48418000	69956000	44197000	25759000	59568	290	56110	363100;363101;363102;363103	490136;490137;490138;490139;490140;490141	490140			6	
YNSQLLSFVR	0	Unmodified	1225.6455	0.64552182	793	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.29	6.51		5	4						5	3	4	4	3	72.058	68.428	2	6.2202E-26	57773	160511_QHF_FH_JSI10i_3	194.06	167.46			0.7986	0.85245	16.939	13	3	Median	1.0048	0.95209	11.743	3	0	Plateau	0.5951	0.71863	20.464	4	2	Median	0.96143	0.90917	12.475	3	1	Median	0.80615	0.82219	12.65	3	0	Plateau	3788400000	2106000000	1682400000	1129500000	525230000	604250000	1108700000	751520000	357140000	768850000	423730000	345120000	781420000	405520000	375900000	59569	793	56111	363104;363105;363106;363107;363108;363109;363110;363111;363112;363113;363114;363115;363116;363117	490142;490143;490144;490145;490146;490147;490148;490149;490150;490151;490152;490153;490154;490155;490156;490157;490158;490159;490160;490161;490162;490163;490164;490165;490166	490147			25	
YNSQTAK	1	Unmodified	810.38718	0.38718187	1857	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		1.3227	1.226	2	0.020341	712	160511_QHF_FH_JSI11i_1	60.76	48.404			1.1859	1.1139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1859	1.1139	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	64227000	29163000	35064000	0	0	0	0	0	0	64227000	29163000	35064000	0	0	0	59570	1857	56112	363118	490167	490167			1	
YNSSSISSVLK	1	Unmodified	1183.6085	0.60846762	1726	P51116	FXR2	Fragile X mental retardation syndrome-related protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		6.33	6.13		2						1		1	1	1		49.295	45.015	2	0.016059	39246	160511_QHF_FH_JSI9i_2	50.284	38.436			0.87891	0.89024	10.833	3	2	Median	0.87891	0.74127	NaN	1	1	Median	0.72104	0.89801	NaN	1	1	Median	0.90803	0.89024	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	151050000	89515000	61533000	72310000	41482000	30828000	68068000	41812000	26256000	10670000	6222000	4448400	0	0	0	59571	1726	56113	363119;363120;363121	490168;490169;490170	490168			3	
YNTEEFITVYPTDPPK	1	Unmodified	1912.9095	0.90946024	3988	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	4									2	2			72.697	72.006	2	1.9408E-11	65263	160511_QHF_FH_JSI10i_1	111.39	95.498			1.0004	0.9846	12.682	3	3	Median	1.0808	0.92027	9.5562	2	2	Median	0.99164	1.1082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	107020000	45253000	61766000	73874000	32135000	41739000	33146000	13118000	20027000	0	0	0	0	0	0	59572	3988	56114	363122;363123;363124;363125	490171;490172;490173;490174	490172			4	
YNTIETFNELFDAHK	1	Unmodified	1840.8632	0.86317875	3516	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	2.2	0.4		4	1							1	1	2	1	85.264	84.711	3	3.6718E-05	75286	160511_QHF_FH_JSI10i_2	78.285	71.705			0.99744	1.1406	16.188	5	1	Linear	1.2869	1.0994	NaN	1	0	Median	0.96277	1.1406	NaN	1	0	Median	1.2722	1.2678	27.866	2	1	Median	1.2091	1.3405	NaN	1	0	Median	148500000	73494000	75009000	21310000	9392500	11918000	50058000	25614000	24444000	48874000	24366000	24508000	28261000	14122000	14140000	59573	3516	56115	363126;363127;363128;363129;363130	490175;490176;490177;490178	490178			3	
YNTPKYR	1	Acetyl (K)	982.48723	0.48723027	1590	P46777	RPL5	60S ribosomal protein L5	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		25.195	16.092	2	0.019888	9972	160513_QHF_FH_JSI11Kac_6	76.774	50.665			0.2799	0.27095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.2799	0.27095	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22906000	17758000	5147800	0	0	0	0	0	0	22906000	17758000	5147800	0	0	0	59574	1590	56116	363131	490179;490180	490180	1607		2	
YNTWVLQDTVLESHLQLLSTILSSAQGLK	1	Unmodified	3256.7343	0.73434342	4749	Q9H6R4	NOL6	Nucleolar protein 6	yes	yes	0	0	0	0				By MS/MS	16	0									1				1	99.806	90.364	3	1.8486E-44	49735	160513_QHF_FH_JSI12Kac_6	214.91	203.65			0.21499	0.22923	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.21499	0.22923	NaN	1	1	Median	83432000	68414000	15018000	0	0	0	0	0	0	0	0	0	83432000	68414000	15018000	59575	4749	56117	363132	490181	490181			1	
YNVLGAETVLNQMR	0	Unmodified	1606.8137	0.81372614	2785	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	80.207	79.381	2	1.767E-05	69778	160511_QHF_FH_JSI11i_2	119.45	86.502			0.70768	0.66721	8.5957	3	3	Plateau	0.67548	0.59402	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70768	0.70257	NaN	1	1	Median	0.63072	0.66721	NaN	1	1	Median	59810000	35922000	23888000	13224000	8910300	4313600	0	0	0	33412000	18360000	15052000	13174000	8652000	4522100	59576	2785	56118	363133;363134;363135;363136	490182;490183;490184;490185;490186	490186			5	
YNVPLNR	0	Unmodified	874.4661	0.4661009	5293	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		27.292	27.292	2	0.02555	23366	160511_QHF_FH_JSI11i_3	54.525	30.553			1.7749	1.6677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7749	1.6677	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	53896000	21225000	32671000	0	0	0	0	0	0	53896000	21225000	32671000	0	0	0	59577	5293	56119	363137	490187	490187			1	
YNVTVIQYIGELLR	0	Unmodified	1679.9247	0.9246568	228	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.62	6.5		2	3						3	1	2	3	2	100.86	97.334	2	5.1585E-37	48603	160513_QHF_FH_JSI12Kac_6	182.37	150.94			0.82036	0.88068	16.691	8	3	Median	0.76287	0.64906	NaN	1	0	Median	0.63331	0.74215	26.246	2	1	Median	0.98378	0.94533	12.692	3	1	Plateau	0.85423	0.89481	3.7367	2	1	Median	1920300000	970250000	950090000	485590000	247880000	237710000	100310000	66723000	33586000	680400000	317610000	362800000	654040000	338040000	316000000	59578	228	56120	363138;363139;363140;363141;363142;363143;363144;363145	490188;490189;490190;490191;490192;490193;490194;490195	490195			8	
YNYDDVLLLSQFIRPHGGMLPR	0	Unmodified	2603.3319	0.33186261	5047	Q9NVS2	MRPS18A	28S ribosomal protein S18a, mitochondrial	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			90.951	85.23	4	1.18E-13	48570	160513_QHF_FH_JSI10Kac_6	114.72	106.33			1.234	1.4813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.234	1.4813	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	94683000	38188000	56495000	0	0	0	94683000	38188000	56495000	0	0	0	0	0	0	59579	5047	56121	363146	490196	490196			1	
YNYHLDSSGSYVFENTVATVMALRR	0	Unmodified	2892.3865	0.38647695	1664	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			89.514	83.793	4	0.0097626	47519	160513_QHF_FH_JSI10Kac_6	47.919	35.723			0.64774	0.74811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64774	0.74811	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	53040000	33731000	19309000	0	0	0	53040000	33731000	19309000	0	0	0	0	0	0	59580	1664	56122	363147	490197	490197			1	
YNYLKPR	1	Acetyl (K)	994.52362	0.52361577	1879	P56385	ATP5I	ATP synthase subunit e, mitochondrial	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		41.853	32.256	2	0.015053	17697	160513_QHF_FH_JSI11Kac_6	83.614	56.089			0.27737	0.27264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.27737	0.27264	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	25781000	20293000	5488000	0	0	0	0	0	0	25781000	20293000	5488000	0	0	0	59581	1879	56123	363148	490198	490198	1893		1	
YNYLSLDSAK	1	Unmodified	1172.5714	0.57135383	376	O43795	MYO1B	Unconventional myosin-Ib	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	1	0	3										1	1	1	50.935	50.436	2	0.0090732	45434	160511_QHF_FH_JSI10i_1	49.418	38.951			0.62906	0.68553	16.14	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.6102	0.68553	NaN	1	0	Median	0.65909	0.6295	NaN	1	0	Median	0.82019	0.86023	NaN	1	0	Median	86455000	44100000	42355000	0	0	0	33427000	19922000	13505000	32552000	14959000	17593000	20476000	9219400	11257000	59582	376	56124	363149;363150;363151	490199	490199			1	
YPALTKPENQDIDWTLLEGETR	1	Unmodified	2588.2758	0.27584709	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.38	0.484		5	3							1	2	2	3	83.672	83.137	3	1.166E-09	74309	160511_QHF_FH_JSI11i_3	102.48	94.947			0.80366	0.83166	11.581	7	1	Median	0.88471	0.76406	NaN	1	0	Median	0.67781	0.83722	24.327	2	1	Median	0.8138	0.80278	4.9988	2	0	Median	0.83987	0.87729	5.9133	2	0	Median	763530000	406560000	356970000	79395000	42208000	37186000	164650000	99938000	64713000	319550000	157160000	162390000	199930000	107250000	92683000	59583	1039	56125	363152;363153;363154;363155;363156;363157;363158;363159	490200;490201;490202;490203;490204;490205;490206;490207;490208;490209;490210;490211;490212;490213;490214;490215;490216	490200			17	
YPALTKPENQDIDWTLLEGETREER	1	Unmodified	3002.4621	0.46214431	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	2	By matching	By MS/MS	By MS/MS		2.5	0.5		2	2							1	2	1		78.096	77.388	4	0.0022316	68776	160511_QHF_FH_JSI11i_3	37.228	25.284			0.98689	0.98372	9.1436	4	0	Median	1.0902	0.91603	NaN	1	0	Median	0.91317	1.074	4.2923	2	0	Median	1.0049	0.92883	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	212520000	99877000	112640000	22642000	9547700	13094000	101960000	48946000	53018000	87911000	41384000	46528000	0	0	0	59584	1039	56126	363160;363161;363162;363163	490217;490218;490219;490220	490218			4	
YPDENGFDAFLK	1	Unmodified	1414.6405	0.64049603	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1	0	3									1	1	1		75.852	75.39	2	0.011995	67139	160511_QHF_FH_JSI9i_1	45.908	33.672			1.0248	1.1014	16.692	3	0	Median	1.0248	0.85877	NaN	1	0	Median	0.97569	1.1793	NaN	1	0	Median	1.1349	1.1014	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	239770000	132310000	107460000	78895000	44820000	34074000	79937000	52457000	27479000	80940000	35031000	45909000	0	0	0	59585	387	56127	363164;363165;363166	490221;490222	490222			2	
YPDLYPQEDEDEEEEREK	1	Unmodified	2311.9604	0.96044577	3531	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.054	41.594	3	2.3785E-06	37675	160511_QHF_FH_JSI12i_1	97.284	89.292			1.1437	1.1549	5.1244	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.89161	1.0533	NaN	1	0	Median	1.0916	1.0608	NaN	1	0	Median	1.1437	1.1549	NaN	1	0	Median	468010000	204590000	263420000	0	0	0	143910000	69347000	74567000	144150000	51137000	93017000	179950000	84105000	95840000	59586	3531	56128	363167;363168;363169	490223;490224;490225;490226;490227;490228	490226			6	
YPDRVPVIVEK	1	Unmodified	1313.7343	0.73433683	1913;649	O95166;Q9H0R8;P60520	GABARAP;GABARAPL1;GABARAPL2	Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1;Gamma-aminobutyric acid receptor-associated protein-like 2	no	no	0	0	0	1			By MS/MS	By matching	3	0			2									1	1	43.669	43.553	3	0.024794	38186	160511_QHF_FH_JSI11i_3	35.645	22.554			1.7377	1.7278	23.366	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5251	1.4646	NaN	1	0	Median	1.98	2.0382	NaN	1	0	Median	310990000	146350000	164650000	0	0	0	0	0	0	177820000	83139000	94677000	133180000	63206000	69972000	59587	649;1913	56129	363170;363171	490229	490229			1	
YPDSHQLFVGNLPHDIDENELK	1	Unmodified	2579.2292	0.22923125	5433	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	74.475	74.33	4	2.0652E-05	64553	160511_QHF_FH_JSI12i_3	62.611	55.5			1.2119	1.1776	40.78	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6725	1.5711	NaN	1	0	Median	0.87818	0.88258	NaN	1	1	Median	146920000	66456000	80461000	0	0	0	0	0	0	58845000	17036000	41809000	88072000	49421000	38651000	59588	5433	56130	363172;363173	490230;490231	490231			2	
YPDYEVTWANDGY	0	Unmodified	1591.6467	0.64670362	4971	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	yes	yes	0	0	0	0	By matching		By MS/MS	By MS/MS	1	0	3									1		1	1	77.066	76.485	2	0.022228	69667	160511_QHF_FH_JSI11i_1	41.876	41.473			0.89373	0.92417	13.184	3	0	Plateau	1.3639	1.0891	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88429	0.84325	NaN	1	0	Median	0.9742	1.0128	NaN	1	0	Median	52985000	28710000	24275000	11821000	6300800	5520600	0	0	0	21656000	9999300	11657000	19507000	12410000	7097800	59589	4971	56131	363174;363175;363176	490232	490232			1	
YPEAPPFVR	0	Unmodified	1074.5498	0.54983053	2398	Q13404	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.09	5.88	4	4					1	2		2	2	4	3	53.044	49.474	2	0.0029033	42412	160511_QHF_FH_JSI12i_2	62.659	52.191			1.0338	1.0334	11.989	11	0	Median	1.1159	0.91853	11.773	2	0	Median	0.75824	0.90786	10.478	2	0	Median	1.0934	1.0888	6.895	4	0	Median	0.93393	1.0334	12.65	3	0	Median	1832100000	929710000	902360000	293300000	145760000	147530000	428400000	246150000	182250000	645060000	304660000	340400000	465320000	233140000	232180000	59590	2398	56132	363177;363178;363179;363180;363181;363182;363183;363184;363185;363186;363187	490233;490234;490235;490236;490237;490238;490239;490240;490241;490242	490235			10	
YPEAPPSVR	0	Unmodified	1014.5134	0.51344502	2715	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	25.101	24.751	2	0.03425	21848	160511_QHF_FH_JSI11i_1	39.253	28.38			0.92071	0.94575	1.2386	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.96472	0.95407	NaN	1	0	Median	0.87871	0.93751	NaN	1	0	Median	768850000	415380000	353470000	0	0	0	0	0	0	419830000	224210000	195620000	349010000	191170000	157840000	59591	2715	56133	363188;363189	490243;490244	490243			2	
YPEGGQILK	1	Unmodified	1003.5338	0.53384611	5155	Q9NZJ4	SACS	Sacsin	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	32.96	31.638	3	0.051238	26799	160511_QHF_FH_JSI12i_2	14.207	0			0.30106	0.34074	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30106	0.34074	NaN	1	0	Median	68216000	61500000	6715700	0	0	0	0	0	0	0	0	0	68216000	61500000	6715700	59592	5155	56134	363190	490245	490245			1	
YPEHAIHK	1	Unmodified	993.50321	0.50321468	1410	P33992	MCM5	DNA replication licensing factor MCM5	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	6.2172	6.3149	2	0.02123	3905	160511_QHF_FH_JSI12i_3	45.081	17.557			1.2371	1.2434	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2371	1.2434	NaN	1	0	Median	88380000	35942000	52438000	0	0	0	0	0	0	0	0	0	88380000	35942000	52438000	59593	1410	56135	363191	490246	490246			1	
YPFESAEAQLLNK	1	Unmodified	1508.7511	0.75110911	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.92	0.266	1	12								3	1	5	4	67.405	66.558	2;3	3.5455E-05	57868	160511_QHF_FH_JSI12i_2	80.706	50.094			0.97448	0.94647	23.577	12	5	Median	1.0707	0.92843	8.9427	3	0	Median	0.77097	0.94217	NaN	1	0	Median	1.0546	1.0556	27.311	5	5	Median	0.95171	1.0624	23.569	3	0	Plateau	867140000	451380000	415760000	157270000	78316000	78952000	76512000	42783000	33730000	453090000	231520000	221570000	180280000	98766000	81513000	59594	1242	56136	363192;363193;363194;363195;363196;363197;363198;363199;363200;363201;363202;363203;363204	490247;490248;490249;490250;490251;490252;490253;490254;490255;490256;490257;490258;490259;490260;490261;490262;490263;490264	490252			17	
YPFILPHQQVDK	1	Unmodified	1483.7823	0.78234966	5395	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.79	0.41		3	11							1	3	4	6	53.233	52.526	2;3	1.4568E-05	44443	160511_QHF_FH_JSI12i_3	96.82	90.978			1.0472	1.0661	20.943	9	6	Median	NaN	NaN	NaN	0	0	Median	0.83186	0.95844	13.195	3	2	Median	1.1124	1.0661	NaN	1	1	Median	1.0673	1.2013	27.712	5	3	Median	1530900000	753090000	777850000	0	0	0	294790000	156890000	137900000	300960000	143210000	157750000	935190000	453000000	482190000	59595	5395	56137	363205;363206;363207;363208;363209;363210;363211;363212;363213;363214;363215;363216;363217;363218	490265;490266;490267;490268;490269;490270;490271;490272;490273;490274;490275;490276;490277;490278;490279;490280;490281;490282;490283	490276			19	
YPGVIYVPEPWAFYTLHVSSR	0	Unmodified	2480.2529	0.25286723	5077	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	16	0									3			1	2	93.763	84.341	3	4.5444E-05	45678	160513_QHF_FH_JSI12Kac_6	110.67	97.477			0.65359	0.67801	18.992	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.90362	0.85723	NaN	1	1	Median	0.5991	0.6317	10.005	2	2	Median	576520000	314500000	262010000	0	0	0	0	0	0	320030000	154640000	165400000	256480000	159870000	96615000	59596	5077	56138	363219;363220;363221	490284;490285;490286	490285			3	
YPGVIYVPEPWAFYTLHVSSRH	0	Unmodified	2617.3118	0.31177909	5077	Q9NWW5	CLN6	Ceroid-lipofuscinosis neuronal protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	89.627	81.684	3;4	6.3508E-11	46938	160513_QHF_FH_JSI10Kac_6	92.29	72.215			1.1009	1.2423	12.644	3	1	Plateau	1.2559	1.0986	NaN	1	0	Median	1.1009	1.302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.95503	1.0169	NaN	1	1	Median	232740000	107160000	125580000	77162000	24104000	53058000	100860000	45310000	55545000	0	0	0	54724000	37745000	16979000	59597	5077	56139	363222;363223;363224	490287;490288;490289	490289			3	
YPGYMNNDLIGLIASLIPTPR	0	Unmodified	2317.214	0.21403888	1223	P23258;Q9NRH3	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	yes	no	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			102.1	94.649	2;3	8.4803E-73	56945	160513_QHF_FH_JSI10Kac_6	208.2	188.62			0.90703	0.91034	26.218	2	0	Median	1.269	1.0958	NaN	1	0	Median	0.64831	0.75629	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	135810000	67187000	68626000	85653000	35431000	50222000	50160000	31756000	18404000	0	0	0	0	0	0	59598	1223	56140	363225;363226	490290;490291	490291			2	
YPHLQVIGGNVVTAAQAK	1	Unmodified	1865.0159	0.015931421	1182	P20839	IMPDH1	Inosine-5'-monophosphate dehydrogenase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.89	5.4			7						2	1	2	5	1	60.168	59.505	2;3	1.8967E-06	52672	160511_QHF_FH_JSI11i_3	101.96	88.124			1.0741	0.99705	10.597	5	3	Median	1.2331	0.99705	NaN	1	1	Median	0.82328	0.92889	NaN	1	0	Median	1.0799	1.0259	0.66348	2	2	Median	0.81279	0.79841	NaN	1	0	Median	799330000	426950000	372380000	132330000	74933000	57401000	143330000	78383000	64948000	396710000	205060000	191650000	126960000	68577000	58380000	59599	1182	56141	363227;363228;363229;363230;363231;363232;363233;363234;363235	490292;490293;490294;490295;490296;490297;490298;490299;490300;490301;490302;490303	490292			12	
YPHMLSVK	1	Unmodified	973.50552	0.50552287	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.78	0.416		2	7							2	4	1	2	29.486	28.471	2;3	0.00029777	23296	160511_QHF_FH_JSI12i_3	91.853	80.98			0.77319	0.84361	37.806	8	0	Median	1.3256	1.0644	NaN	1	0	Median	0.5496	0.62965	51.649	4	0	Median	0.96769	0.92659	NaN	1	0	Median	0.76996	0.81045	14.488	2	0	Median	1610300000	868410000	741850000	195710000	79876000	115840000	512370000	316970000	195400000	316410000	146460000	169950000	585770000	325110000	260660000	59600	5558	56142	363236;363237;363238;363239;363240;363241;363242;363243;363244	490304;490305;490306;490307;490308;490309;490310;490311;490312;490313;490314;490315;490316;490317	490315			14	
YPHYFPLLK	1	Unmodified	1176.6332	0.63316622	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.1	6.46		1	5						4		4	3	3	65.629	61.651	2;3	5.545E-06	54624	160511_QHF_FH_JSI11i_3	96.711	90.709			1.2015	1.1847	17.768	9	2	Median	NaN	NaN	NaN	0	0	Median	1.0127	1.5296	27.713	3	2	Plateau	1.2015	1.1847	10.919	3	0	Median	1.0518	1.0799	12.936	3	0	Median	946240000	467220000	479010000	0	0	0	73106000	37533000	35573000	326280000	153480000	172800000	546850000	276210000	270640000	59601	1787	56143	363245;363246;363247;363248;363249;363250;363251;363252;363253;363254	490318;490319;490320;490321;490322;490323;490324;490325;490326;490327;490328;490329;490330;490331;490332;490333;490334;490335;490336;490337;490338;490339;490340;490341	490321			23	
YPHYFPVMK	1	Unmodified	1180.5739	0.57393679	4551	Q9BYT8	NLN	Neurolysin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.88	0.331		1	7							2	3	1	2	48.699	47.696	3	2.4874E-05	40654	160511_QHF_FH_JSI12i_3	81.548	77.693			1.1857	1.1904	10.86	5	1	Median	1.3391	1.0879	19.746	2	0	Median	1.0114	1.1904	NaN	1	1	Median	1.2283	1.1396	NaN	1	0	Median	1.1857	1.1914	NaN	1	0	Median	252190000	118950000	133240000	41794000	18249000	23544000	44504000	22393000	22111000	78032000	37247000	40785000	87859000	41062000	46797000	59602	4551	56144	363255;363256;363257;363258;363259;363260;363261;363262	490342;490343;490344;490345;490346;490347;490348;490349;490350;490351	490350			10	
YPIDLAGLLQYVANQLK	1	Unmodified	1918.0564	0.056399252	3675	Q8NI27	THOC2	THO complex subunit 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.82	94.362	3	2.13E-05	56770	160513_QHF_FH_JSI10Kac_6	88.009	74.177			0.70915	0.70629	38.769	2	0	Median	0.63457	0.53694	NaN	1	0	Median	0.7925	0.92904	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	109300000	57354000	51946000	40721000	22867000	17855000	68579000	34488000	34091000	0	0	0	0	0	0	59603	3675	56145	363263;363264	490352;490353	490353			2	
YPIEHGIITNWDDMEK	1	Unmodified	1959.9037	0.90366336	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	5.31	7	21	10						8	8	12	14	12	68.688	66.332	2;3	6.8389E-31	58608	160511_QHF_FH_JSI10i_2	196.38	192.04			0.96965	0.98131	18.525	42	13	Median	1.232	1.0125	12.314	8	1	Median	0.84193	0.97869	23.306	12	4	Median	0.96401	0.96056	12.939	11	4	Median	0.89553	1.0176	21.059	11	4	Median	58141000000	29888000000	28253000000	9755600000	4476800000	5278800000	13462000000	7409900000	6051600000	18443000000	9557100000	8885400000	16481000000	8444300000	8036900000	59604	2015;2070	56146	363265;363266;363267;363268;363269;363270;363271;363272;363273;363274;363275;363276;363277;363278;363279;363280;363281;363282;363283;363284;363285;363286;363287;363288;363289;363290;363291;363292;363293;363294;363295;363296;363297;363298;363299;363300;363301;363302;363303;363304;363305;363306;363307;363308;363309;363310	490354;490355;490356;490357;490358;490359;490360;490361;490362;490363;490364;490365;490366;490367;490368;490369;490370;490371;490372;490373;490374;490375;490376;490377;490378;490379;490380;490381;490382;490383;490384;490385;490386;490387;490388;490389;490390;490391;490392;490393;490394;490395;490396;490397;490398;490399;490400;490401;490402;490403;490404;490405;490406;490407;490408;490409;490410;490411;490412;490413;490414;490415;490416;490417;490418;490419;490420;490421;490422;490423;490424;490425;490426;490427;490428;490429;490430;490431;490432;490433;490434;490435;490436;490437;490438;490439;490440;490441;490442;490443;490444;490445;490446;490447;490448;490449;490450;490451;490452;490453;490454;490455;490456;490457;490458;490459;490460;490461;490462;490463;490464;490465;490466;490467;490468;490469;490470;490471;490472;490473;490474;490475;490476;490477;490478;490479;490480;490481;490482;490483;490484;490485;490486;490487;490488;490489;490490;490491;490492;490493;490494;490495;490496;490497;490498;490499;490500;490501;490502;490503;490504;490505;490506;490507;490508;490509;490510	490467			157	
YPIEHGIITNWDDMEK	1	Oxidation (M)	1975.8986	0.89857798	2070;2015	P63267;P62736;P68032;P68133	ACTG2;ACTA2;ACTC1;ACTA1	Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.61		13							1	3	3	4	4	58.419	56.834	2;3	3.8937E-05	48811	160511_QHF_FH_JSI12i_2	92.856	81.417			1.0117	1.0616	15.313	14	4	Median	1.3705	1.1315	3.1798	3	2	Plateau	0.93562	1.1207	13.785	3	1	Median	0.79042	1.0078	16.216	4	1	Linear	0.90138	0.99088	15.905	4	0	Median	8792900000	4538700000	4254200000	788130000	341960000	446160000	1632400000	801910000	830510000	3423600000	1850900000	1572700000	2948800000	1543900000	1404900000	59605	2015;2070	56146	363311;363312;363313;363314;363315;363316;363317;363318;363319;363320;363321;363322;363323;363324	490511;490512;490513;490514;490515;490516;490517;490518;490519;490520;490521;490522;490523;490524;490525;490526;490527;490528;490529;490530;490531;490532;490533;490534;490535;490536;490537;490538;490539;490540	490514		1671;1729	30	
YPIEHGIITNWDDMEKIWHHTFYNELR	1	Acetyl (K);Oxidation (M)	3514.6405	0.64045981	2070	P68032;P68133	ACTC1;ACTA1	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	yes	no	1	0	1	1			By MS/MS		16	0									2			2		84.773	75.456	4;5	0.0056506	41768	160513_QHF_FH_JSI11Kac_6	54.732	48.952			0.4535	0.44049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4535	0.44049	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	109130000	87212000	21923000	0	0	0	0	0	0	109130000	87212000	21923000	0	0	0	59606	2070	56147	363325;363326	490541;490542	490541	2141	1729	2	
YPIEHGIITNWDDMEKIWHHTFYNELR	1	Acetyl (K)	3498.6455	0.64554518	2070	P68032;P68133	ACTC1;ACTA1	Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle	yes	no	1	0	0	1		By MS/MS	By MS/MS		16	0									5		2	3		91.332	83.425	4;5	5.0331E-36	48074	160513_QHF_FH_JSI10Kac_6	135.01	118.57			0.25525	0.24556	189.55	5	2	Median	NaN	NaN	NaN	0	0	Median	1.6359	1.9399	2.9812	2	0	Median	0.038642	0.03706	100.46	3	2	Plateau	NaN	NaN	NaN	0	0	Median	1803900000	1443800000	360100000	0	0	0	488910000	198790000	290120000	1315000000	1245000000	69979000	0	0	0	59607	2070	56147	363327;363328;363329;363330;363331	490543;490544;490545;490546;490547	490547	2141		4	
YPIEHGIVTNWDDMEK	1	Unmodified	1945.888	0.88801329	2062;1916	P60709;P63261	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.23	0.421		10	3							3	1	5	4	66.155	65.288	2;3	1.6205E-17	57958	160511_QHF_FH_JSI11i_3	125.52	119.36			0.3589	0.37809	58.038	6	6	Linear	1.2595	1.0643	64.129	2	2	Median	0.41541	0.49905	NaN	1	1	Median	0.36265	0.35959	14.72	2	2	Median	0.44683	0.48021	NaN	1	1	Median	605690000	433820000	171860000	98142000	59261000	38881000	119290000	80961000	38333000	297550000	231100000	66451000	90700000	62500000	28200000	59608	1916;2062	56148	363332;363333;363334;363335;363336;363337;363338;363339;363340;363341;363342;363343;363344	490548;490549;490550;490551;490552;490553;490554;490555;490556;490557;490558;490559;490560;490561;490562;490563;490564	490548			17	
YPIFFFGTHETAFLGPK	1	Unmodified	1970.9931	0.99307071	3277	Q7Z4V5;Q9Y3E1	HDGFRP2;HDGFRP3	Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.82	6.56		1	5						5	2	3	3	3	94.719	90.817	2;3	8.4537E-07	85894	160511_QHF_FH_JSI12i_3	114.59	105.06			0.98305	0.90866	19.251	11	6	Median	1.1969	0.99145	19.11	2	0	Median	0.73481	0.86708	16.201	3	2	Median	0.96355	0.90583	4.5455	3	2	Plateau	0.99932	1.0547	31.583	3	2	Median	2245800000	1213400000	1032400000	491950000	212570000	279380000	533010000	309670000	223340000	545450000	325850000	219600000	675410000	365360000	310050000	59609	3277	56149	363345;363346;363347;363348;363349;363350;363351;363352;363353;363354;363355	490565;490566;490567;490568;490569;490570;490571;490572;490573;490574;490575;490576;490577;490578;490579;490580;490581;490582;490583	490577			19	
YPIPPPDAK	1	Unmodified	996.52803	0.52803245	2191;1453	Q02750;P36507	MAP2K1;MAP2K2	Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2	no	no	0	0	0	0	By MS/MS				1	0	2									2				33.61	32.355	2	0.0065549	28554	160511_QHF_FH_JSI9i_1	55.531	34.832			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59610	2191;1453	56150	363356;363357	490584;490585	490585			2	
YPIREDLLK	1	Unmodified	1145.6445	0.64445919	5555	Q9Y315	DERA	Deoxyribose-phosphate aldolase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	44.463	44.225	3	0.015114	39258	160511_QHF_FH_JSI11i_3	39.022	12.349			0.9264	0.95871	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9264	0.95871	NaN	1	0	Median	144520000	66551000	77969000	0	0	0	0	0	0	0	0	0	144520000	66551000	77969000	59611	5555	56151	363358;363359	490586;490587	490586			2	
YPLFEGQETGKK	2	Unmodified	1395.7034	0.70343063	1519	P41250	GARS	Glycine--tRNA ligase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			7									2	5	31.131	31.084	2;3	0.0004745	26595	160511_QHF_FH_JSI12i_3	58.098	49.094			0.93273	0.96013	9.4417	5	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.97168	0.90543	8.296	2	0	Median	0.93273	0.96652	10.089	3	1	Median	768750000	423680000	345060000	0	0	0	0	0	0	298030000	154000000	144030000	470720000	269680000	201040000	59612	1519	56152	363360;363361;363362;363363;363364;363365;363366	490588;490589;490590;490591;490592;490593;490594;490595	490591			7	
YPLVFSPQMVGFYIK	1	Unmodified	1787.9321	0.93205036	557	O75691	UTP20	Small subunit processome component 20 homolog	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		95.731	86.525	2	0.00078859	49046	160513_QHF_FH_JSI11Kac_6	104.59	83.759			1.0495	0.95972	24.266	2	0	Median	0.94051	0.8084	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1711	1.1394	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	113690000	56475000	57219000	27303000	14058000	13245000	0	0	0	86391000	42416000	43974000	0	0	0	59613	557	56153	363367;363368	490596;490597	490596			2	
YPMAVGLNK	1	Unmodified	991.51609	0.51608756	5604	Q9Y3U8	RPL36	60S ribosomal protein L36	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.93	4.57	3	5	4					2		2	4	4	4	43	40.792	2	9.4063E-05	34848	160511_QHF_FH_JSI12i_2	94.262	72.131			0.94657	0.96035	12.54	14	1	Median	1.1761	0.9711	2.09	2	0	Median	0.78019	0.97111	10.595	4	0	Linear	0.94657	0.93907	4.2037	4	0	Median	0.98262	1.0133	21.769	4	1	Median	3386700000	1729500000	1657300000	469670000	238480000	231200000	663250000	369330000	293920000	1055900000	538280000	517620000	1197900000	583380000	614550000	59614	5604	56154	363369;363370;363371;363372;363373;363374;363375;363376;363377;363378;363379;363380;363381;363382	490598;490599;490600;490601;490602;490603;490604;490605;490606;490607;490608;490609;490610;490611;490612;490613;490614;490615;490616;490617;490618;490619;490620;490621;490622;490623;490624;490625;490626;490627;490628;490629;490630;490631;490632;490633	490604			36	
YPNAELAWCQEEHK	1	Unmodified	1773.7781	0.77806891	2185	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	45.502	44.11	3	0.0043769	37719	160511_QHF_FH_JSI12i_2	49.988	45.886			1.1396	1.2014	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1396	1.2014	NaN	1	1	Median	17159000	5313600	11845000	0	0	0	0	0	0	0	0	0	17159000	5313600	11845000	59615	2185	56155	363383	490634	490634			1	
YPNLQVIGGNVVTAAQAK	1	Unmodified	1841.9999	0.99994701	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.78	0.416	2	7								2	3	2	2	74.368	73.733	2;3	4.7819E-05	63633	160511_QHF_FH_JSI12i_2	72.446	67.642			1.1695	1.1848	21.791	5	3	Median	NaN	NaN	NaN	0	0	Median	1.0236	1.1964	24.83	2	1	Median	1.1975	1.2118	3.1819	2	1	Median	0.72874	0.80825	NaN	1	1	Median	136710000	63369000	73338000	0	0	0	53568000	21956000	31613000	74431000	34837000	39594000	8707800	6576400	2131400	59616	1015	56156	363384;363385;363386;363387;363388;363389;363390;363391;363392	490635;490636;490637;490638;490639;490640;490641;490642;490643	490637			9	
YPPFLPVAFHVLFASSHTPR	0	Unmodified	2282.2	0.2000438	3777	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	3	2	2	93.46	85.501	3;4	3.1534E-08	49486	160513_QHF_FH_JSI10Kac_6	97.457	80.527			0.99382	1.055	17.002	8	2	Median	1.4178	1.2219	NaN	1	1	Median	0.78135	0.90318	15.281	3	1	Median	1.1199	1.0662	0.77099	2	0	Median	0.93744	0.99858	27.406	2	0	Median	854500000	401970000	452530000	111640000	49929000	61710000	360520000	181160000	179360000	258620000	110870000	147750000	123720000	60006000	63714000	59617	3777	56157	363393;363394;363395;363396;363397;363398;363399;363400	490644;490645;490646;490647;490648;490649;490650	490648			6	
YPPSATTLHFEFYADPGAEVK	1	Unmodified	2339.111	0.1110136	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	80.612	80.371	3	0.042936	69599	160511_QHF_FH_JSI12i_3	19.992	16.604			1.1224	1.1346	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1224	1.1346	NaN	1	0	Median	85345000	32969000	52376000	0	0	0	0	0	0	0	0	0	85345000	32969000	52376000	59618	3290	56158	363401	490651	490651			1	
YPQLLPGIR	0	Unmodified	1055.6128	0.61276513	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4							1	2	2	2	63.681	62.774	2	0.0022117	52712	160511_QHF_FH_JSI10i_3	65.676	45.394			1.0347	1.0792	14.622	6	2	Median	1.5201	1.2153	NaN	1	0	Median	0.85003	0.99777	20.765	2	1	Median	1.1482	1.0837	NaN	1	0	Median	0.9001	0.96473	15.269	2	1	Median	1220800000	675510000	545280000	53995000	24173000	29821000	354480000	210330000	144150000	273930000	125220000	148710000	538390000	315800000	222590000	59619	1234	56159	363402;363403;363404;363405;363406;363407;363408	490652;490653;490654;490655;490656;490657;490658;490659	490655			8	
YPQLTGFHSDLHFLDK	1	Unmodified	1916.9421	0.94209778	697	O95466	FMNL1	Formin-like protein 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			3									1	2	75.113	74.971	3;4	0.013268	65152	160511_QHF_FH_JSI12i_3	38.418	28.63			1.2264	1.1667	13.209	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.371	1.2809	NaN	1	0	Median	1.0971	1.0627	NaN	1	0	Median	58376000	31412000	26964000	0	0	0	0	0	0	27514000	16279000	11235000	30862000	15133000	15729000	59620	697	56160	363409;363410;363411	490660;490661	490661			2	
YPSATNNTPAK	1	Unmodified	1162.5619	0.56185177	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	1	0	3									1	1		1	11.19	10.721	2	0.0022954	8581	160511_QHF_FH_JSI12i_1	57.267	39.882			0.77309	1.0045	9.6853	3	0	Plateau	1.2213	1.0045	NaN	1	0	Median	0.77079	0.90957	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77309	0.8276	NaN	1	0	Median	338720000	172940000	165770000	122120000	53420000	68699000	109580000	62645000	46932000	0	0	0	107020000	56878000	50142000	59621	3736	56161	363412;363413;363414	490662;490663	490662			2	
YPSHSFIGEESVAAGEK	1	Unmodified	1806.8424	0.84244331	1317	P29218	IMPA1	Inositol monophosphatase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.56	5.6		3	4						2	2	1	3	3	43.529	41	2;3	7.3834E-31	34853	160511_QHF_FH_JSI12i_3	156.22	150.31			0.89778	0.92335	38.82	9	3	Median	2.0446	1.7312	41.443	2	2	Median	1.4986	1.8061	NaN	1	1	Median	0.89642	0.84568	26.589	3	0	Plateau	0.894	0.86549	7.2975	3	0	Plateau	1433300000	696640000	736630000	191150000	53045000	138110000	231890000	96197000	135700000	379300000	216470000	162830000	630930000	330930000	300000000	59622	1317	56162	363415;363416;363417;363418;363419;363420;363421;363422;363423	490664;490665;490666;490667;490668;490669;490670;490671;490672;490673;490674;490675;490676;490677	490674			13	
YPSLELERR	0	Unmodified	1161.6142	0.6142217	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.5	0.5		1	1							1	1			34.082	32.85	3	0.014237	27440	160511_QHF_FH_JSI10i_3	33.922	17.719			1.1497	1.118	4.0966	2	0	Median	1.2796	1.0861	NaN	1	0	Median	1.033	1.1509	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60346000	26489000	33857000	29662000	11418000	18244000	30684000	15071000	15612000	0	0	0	0	0	0	59623	2927	56163	363424;363425	490678;490679	490678			2	
YPSLGQKPGGSDFLMK	2	Unmodified	1723.8603	0.86034198	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	57.754	57.022	2;3	7.7388E-05	50561	160511_QHF_FH_JSI11i_3	69.729	61.552			1.0164	1.0034	5.9863	7	0	Median	1.3274	1.0959	NaN	1	0	Median	0.84334	0.98939	1.9305	2	0	Median	1.093	1.029	3.5604	2	0	Median	0.95126	0.96494	8.6713	2	0	Median	2593500000	1334500000	1259000000	324400000	155210000	169190000	331630000	180550000	151080000	734850000	355670000	379190000	1202600000	643110000	559490000	59624	373	56164	363426;363427;363428;363429;363430;363431;363432	490680;490681;490682;490683;490684;490685;490686;490687;490688;490689;490690;490691;490692;490693	490683			14	
YPSLGQKPGGSDFLMK	2	Oxidation (M)	1739.8553	0.8552566	373	O43768	ENSA	Alpha-endosulfine	yes	yes	0	0	1	1	By matching	By MS/MS			3	0			2							1	1			51.698	50.12	3	0.00916	41936	160511_QHF_FH_JSI10i_3	44.252	38.878			1.0954	1.0528	5.0309	2	0	Median	1.2327	1.0161	NaN	1	0	Median	0.9734	1.091	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203870000	96246000	107620000	98902000	40046000	58856000	104970000	56200000	48767000	0	0	0	0	0	0	59625	373	56164	363433;363434	490694	490694		147	1	
YPSLSLHGIEGAFSGSGAK	1	Unmodified	1876.9319	0.93192702	4160	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	yes	yes	0	0	0	0		By matching	By matching	By MS/MS	3	0			3								1	1	1	75.446	74.879	3	3.585E-05	65199	160511_QHF_FH_JSI12i_3	51.819	47.471			1.2892	1.244	24.692	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.7159	0.80172	NaN	1	0	Median	1.3461	1.2714	NaN	1	0	Median	1.1786	1.1766	NaN	1	0	Median	132700000	58741000	73954000	0	0	0	21701000	11561000	10140000	57462000	25642000	31820000	53532000	21538000	31993000	59626	4160	56165	363435;363436;363437	490695	490695			1	
YPSPFFVFGEK	1	Unmodified	1316.6441	0.64412484	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.9	4.06		4	5						1	2	2	3	3	88.503	87.078	2	0.00014133	76718	160511_QHF_FH_JSI12i_3	83.869	72.275			1.077	1.0943	15.616	10	2	Median	1.1697	0.97946	11.227	2	1	Median	0.90728	1.0952	7.1679	2	1	Median	1.2235	1.1854	14.629	3	0	Plateau	1.0892	1.1243	20.074	3	0	Median	1959200000	841060000	1118100000	229790000	97411000	132380000	241210000	116130000	125080000	530540000	216010000	314530000	957650000	411500000	546150000	59627	2265	56166	363438;363439;363440;363441;363442;363443;363444;363445;363446;363447	490696;490697;490698;490699;490700;490701;490702;490703;490704;490705;490706;490707;490708;490709;490710;490711;490712;490713;490714;490715	490713			19	
YPSPPMGSVSAPNLPTAEDNLEYVR	0	Unmodified	2703.285	0.28503157	1583	P46109	CRKL	Crk-like protein	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	84.928	84.468	3	1.2141E-16	76968	160511_QHF_FH_JSI12i_1	118.37	112.07			1.1755	1.0732	6.8569	4	1	Linear	1.377	1.1131	NaN	1	0	Median	0.91806	1.0766	NaN	1	0	Median	1.3075	1.2479	NaN	1	1	Median	1.0568	1.0845	NaN	1	0	Median	211430000	95517000	115920000	49897000	19413000	30484000	58178000	31704000	26474000	48857000	18713000	30145000	54500000	25687000	28813000	59628	1583	56167	363448;363449;363450;363451	490716;490717;490718	490717			3	
YPTLLEVLLNFLK	1	Unmodified	1561.912	0.91196685	1535	P42345	MTOR	Serine/threonine-protein kinase mTOR	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			104.38	98.662	2	0.020081	58397	160513_QHF_FH_JSI10Kac_6	45.911	18.813			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59629	1535	56168	363452	490719	490719			1	
YPTQSGKPPLLVSAPSK	2	Unmodified	1768.9723	0.97233527	4603	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	3	0			3							1		1	1	46.753	46.136	3	0.0024162	37685	160511_QHF_FH_JSI9i_3	45.257	38.528			0.92123	0.68607	21.778	3	2	Plateau	1.2165	0.97697	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.69764	0.65677	NaN	1	1	Median	0.66633	0.68607	NaN	1	1	Median	777590000	413620000	363960000	174960000	81135000	93824000	0	0	0	327250000	174460000	152790000	275380000	158030000	117350000	59630	4603	56169	363453;363454;363455	490720;490721;490722;490723	490721			4	
YPVGVHFLPK	1	Unmodified	1155.6441	0.64406526	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.97		5	6						4	5	4	3	3	56.008	52.621	2;3	2.2876E-05	46423	160511_QHF_FH_JSI11i_3	72.643	68.344			0.96001	0.94619	12.649	14	1	Median	1.0187	0.83615	8.7949	4	1	Linear	0.80677	0.96307	21.05	4	0	Median	0.96729	0.98378	2.6995	3	0	Plateau	0.89302	0.90728	9.5368	3	0	Median	12510000000	5631700000	6878600000	3300400000	1516700000	1783600000	2704500000	1378700000	1325800000	2631400000	1204700000	1426700000	3874000000	1531500000	2342500000	59631	1234	56170	363456;363457;363458;363459;363460;363461;363462;363463;363464;363465;363466;363467;363468;363469;363470	490724;490725;490726;490727;490728;490729;490730;490731;490732;490733;490734;490735;490736;490737;490738;490739;490740;490741;490742;490743;490744;490745;490746;490747;490748;490749;490750;490751;490752;490753;490754;490755	490727			32	
YPVNSVNILK	1	Unmodified	1145.6445	0.64445919	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.7	4	4	3					1		2	3	4	3	55.261	53.661	2	0.004538	48266	160511_QHF_FH_JSI10i_1	55.112	15.466			0.8878	0.91499	23.575	12	3	Median	0.84787	0.70027	1.4993	2	0	Median	0.71654	0.87515	20.766	3	1	Plateau	1.0532	1.0352	20.748	4	1	Median	1.0797	1.203	22.943	3	1	Median	5753600000	2964900000	2788800000	841430000	380670000	460760000	1431700000	787900000	643760000	2177900000	1162000000	1015900000	1302700000	634320000	668350000	59632	1132	56171	363471;363472;363473;363474;363475;363476;363477;363478;363479;363480;363481;363482	490756;490757;490758;490759;490760;490761;490762;490763;490764;490765;490766;490767;490768;490769	490760			14	
YPVNSVNILKAHGR	1	Acetyl (K)	1608.8736	0.87362428	1132	P17987	TCP1	T-complex protein 1 subunit alpha	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		61.181	51.473	3	0.0073868	27785	160513_QHF_FH_JSI11Kac_6	53.328	40.768			0.29842	0.29552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29842	0.29552	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	15925000	13057000	2867600	0	0	0	0	0	0	15925000	13057000	2867600	0	0	0	59633	1132	56172	363483	490770	490770	986		1	
YPVPENWLHK	1	Unmodified	1281.6506	0.6506072	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.496		7	9							1	1	6	8	54.811	54.216	2;3	4.1826E-08	46592	160511_QHF_FH_JSI12i_3	99.973	99.973			0.99945	0.98224	24.515	10	2	Median	1.2055	1.0273	NaN	1	0	Median	0.82849	1.0097	NaN	1	0	Median	0.98514	0.95211	22.814	5	2	Median	1.0197	1.0329	30.682	3	0	Median	2492800000	1247800000	1245000000	172850000	81333000	91513000	193690000	97060000	96630000	1220500000	629220000	591250000	905760000	440180000	465580000	59634	1488	56173	363484;363485;363486;363487;363488;363489;363490;363491;363492;363493;363494;363495;363496;363497;363498;363499	490771;490772;490773;490774;490775;490776;490777;490778;490779;490780;490781;490782;490783;490784;490785;490786;490787;490788;490789;490790;490791;490792;490793;490794;490795;490796;490797;490798;490799;490800;490801	490795			31	
YPVPENWLHKEAHQLFLEPEVLDPESVELK	2	Acetyl (K)	3626.8297	0.82970036	1488	P39748	FEN1	Flap endonuclease 1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		93.992	84.609	4	4.8685E-06	47780	160513_QHF_FH_JSI11Kac_6	79.021	63.411			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	115990000	115990000	0	0	0	0	0	0	0	115990000	115990000	0	0	0	0	59635	1488	56174	363500	490802	490802	1500		1	
YPVVHIGK	1	Unmodified	911.52289	0.52288749	140	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.7	0.458		3	7								3	3	4	29.096	28.429	3	0.0039218	24302	160511_QHF_FH_JSI12i_2	43.808	34.594			1.1737	1.2223	71.892	8	4	Median	NaN	NaN	NaN	0	0	Median	0.60373	0.67249	89.236	3	2	Median	1.3806	1.2905	27.26	3	2	Plateau	0.92619	0.95529	45.781	2	0	Median	423330000	185590000	237740000	0	0	0	77044000	45331000	31712000	192060000	69805000	122250000	154230000	70456000	83776000	59636	140	56175	363501;363502;363503;363504;363505;363506;363507;363508;363509;363510	490803;490804;490805;490806;490807;490808;490809;490810	490805			7	
YPVWLWK	1	Unmodified	990.53272	0.5327239	2347	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	9.5	6.5			3						3	2		2	2	80.167	75.332	2	0.049359	69802	160511_QHF_FH_JSI11i_3	43	22.718			0.9926	0.89977	18.46	6	0	Median	1.2825	1.0743	19.896	2	0	Median	NaN	NaN	NaN	0	0	Median	0.88269	0.83129	6.0208	2	0	Median	0.88549	0.92236	24.625	2	0	Median	485100000	257220000	227880000	145290000	65431000	79856000	0	0	0	153450000	84187000	69263000	186360000	107600000	78763000	59637	2347	56176	363511;363512;363513;363514;363515;363516	490811;490812	490811			2	
YPVYGVQWHPEK	1	Unmodified	1501.7354	0.73539946	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.57	0.495		3	4							1		3	3	49.777	49.284	2;3	1.1883E-05	42098	160511_QHF_FH_JSI12i_3	98.902	93.823			0.99657	1.0011	44.081	7	0	Median	0.96024	0.82455	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.99625	0.94632	3.549	3	0	Plateau	1.0386	1.0743	72.741	3	0	Median	1435200000	724150000	711070000	86523000	35389000	51134000	0	0	0	568400000	257330000	311070000	780300000	431430000	348870000	59638	3891	56177	363517;363518;363519;363520;363521;363522;363523	490813;490814;490815;490816;490817;490818;490819;490820;490821;490822;490823;490824;490825;490826;490827;490828	490827			16	
YPYHLMLQK	1	Unmodified	1191.6111	0.61105057	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.5	4.36		1	6						1	2	2	2	2	45.094	44.422	2;3	0.00013099	37348	160511_QHF_FH_JSI10i_3	69.954	52.518			1.0276	1.0626	14.667	7	0	Median	1.0213	0.85231	18.152	2	0	Median	1.0033	1.1258	NaN	1	0	Median	1.0231	0.97204	13.937	2	0	Median	1.0319	1.0779	2.021	2	0	Median	860820000	454930000	405890000	141920000	64831000	77091000	105610000	57774000	47833000	252460000	122290000	130160000	360830000	210030000	150800000	59639	3290	56178	363524;363525;363526;363527;363528;363529;363530;363531	490829;490830;490831;490832;490833;490834;490835;490836;490837;490838;490839;490840;490841;490842;490843;490844	490834			16	
YPYMVEWYTK	1	Unmodified	1378.6268	0.62676022	4637	Q9H0P0	NT5C3A	Cytosolic 5'-nucleotidase 3A	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	73.559	72.283	2	0.015035	62394	160511_QHF_FH_JSI12i_2	45.161	37.515			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59640	4637	56179	363532	490845	490845			1	
YPYWPHQPIENL	0	Unmodified	1555.746	0.74596415	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		76.685	75.97	2	0.00010728	66726	160511_QHF_FH_JSI11i_2	88.496	71.918			1.1049	1.1256	10.553	3	2	Median	1.541	1.3487	NaN	1	1	Median	0.92984	1.1213	NaN	1	1	Median	1.1049	1.1256	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	431930000	210150000	221780000	104190000	42933000	61261000	145400000	75159000	70237000	182340000	92056000	90287000	0	0	0	59641	589	56180	363533;363534;363535	490846;490847;490848;490849	490848			4	
YQADIPEMLLEGESDEREQSK	1	Unmodified	2466.122	0.12204857	4414	Q9BTC8	MTA3	Metastasis-associated protein MTA3	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	76.336	76.198	3	1.6657E-05	66182	160511_QHF_FH_JSI12i_3	63.578	54.978			0.63452	0.59672	38.968	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.4847	0.453	NaN	1	1	Median	0.83064	0.78602	NaN	1	0	Median	48966000	27841000	21124000	0	0	0	0	0	0	16636000	10450000	6185400	32330000	17391000	14939000	59642	4414	56181	363536;363537	490850;490851;490852;490853;490854	490853			5	
YQADITDLLK	1	Unmodified	1178.6183	0.61830402	2389	Q13330	MTA1	Metastasis-associated protein MTA1	yes	yes	0	0	0	0	By MS/MS		By MS/MS		1	0	2									1		1		73.753	73.127	2	0.011124	65006	160511_QHF_FH_JSI9i_1	56.432	23.591			0.7199	0.62827	22.962	2	0	Median	0.67864	0.53411	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.76368	0.73903	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	86799000	54487000	32311000	25835000	15630000	10205000	0	0	0	60964000	38857000	22106000	0	0	0	59643	2389	56182	363538;363539	490855;490856	490855			2	
YQAECSQFK	1	Unmodified	1159.4968	0.49680868	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		18.246	18.126	2	0.00025799	15419	160511_QHF_FH_JSI11i_1	97.431	75.345			1.9667	1.9138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9667	1.9138	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	109500000	35484000	74015000	0	0	0	0	0	0	109500000	35484000	74015000	0	0	0	59644	1085	56183	363540	490857	490857			1	
YQAEIPDRLVEGESDNR	0	Unmodified	1989.9392	0.93919724	606	O94776	MTA2	Metastasis-associated protein MTA2	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		49.647	49.647	3	0.024786	43904	160511_QHF_FH_JSI11i_3	34.721	25.306			1.0886	1.0048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0886	1.0048	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	51267000	28102000	23166000	0	0	0	0	0	0	51267000	28102000	23166000	0	0	0	59645	606	56184	363541	490858	490858			1	
YQAIASNSK	1	Unmodified	980.49271	0.49270958	533	O75477	ERLIN1	Erlin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		9.7237	9.5423	2	0.0043924	7304	160511_QHF_FH_JSI10i_1	56.916	39.068			0.83714	0.88484	9.1733	2	1	Median	NaN	NaN	NaN	0	0	Median	0.81049	0.94413	NaN	1	0	Median	0.86467	0.82926	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	84987000	47770000	37217000	0	0	0	48199000	27457000	20742000	36787000	20312000	16475000	0	0	0	59646	533	56185	363542;363543	490859;490860	490860			2	
YQAIFDNTTSLTDK	1	Unmodified	1615.773	0.77296676	2437	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	2	1	59.387	58.803	2	5.8868E-05	53456	160511_QHF_FH_JSI12i_1	74.46	53.59			0.62679	0.63395	40.324	4	4	Median	0.75033	0.61281	NaN	1	1	Median	0.37692	0.43816	59.082	2	2	Median	0.68739	0.65581	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	134780000	74480000	60296000	21834000	11558000	10276000	65801000	41580000	24221000	47141000	21342000	25799000	0	0	0	59647	2437	56186	363544;363545;363546;363547;363548;363549	490861;490862;490863;490864;490865;490866	490863			6	
YQALMDGLSLESLLSFVK	1	Unmodified	2013.0493	0.049264964	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0			By matching	By MS/MS	2	0		2										1	1	103.29	103.16	3	5.7065E-06	89109	160511_QHF_FH_JSI12i_2	88.565	79.623			0.80092	0.8511	13.691	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75834	0.77256	NaN	1	0	Median	0.8459	0.93761	NaN	1	0	Median	39593000	20872000	18721000	0	0	0	0	0	0	27731000	15393000	12338000	11861000	5479000	6382500	59648	387	56187	363550;363551	490867	490867			1	
YQASHPNLR	0	Unmodified	1084.5414	0.5413911	720	O95721	SNAP29	Synaptosomal-associated protein 29	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			4							2	2			11.871	11.127	2;3	0.00093332	8557	160511_QHF_FH_JSI9i_3	71.379	60.912			1.1589	1.1497	17.765	4	0	Median	1.5671	1.2809	4.1935	2	0	Median	0.83005	0.97122	12.777	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	212170000	95053000	117120000	97607000	35936000	61671000	114560000	59117000	55447000	0	0	0	0	0	0	59649	720	56188	363552;363553;363554;363555	490868;490869;490870;490871;490872	490871			5	
YQASSEAPPAK	1	Unmodified	1147.551	0.55095274	4784	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		12.243	12.113	2	0.0023991	9727	160511_QHF_FH_JSI11i_1	61.161	42.067			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59650	4784	56189	363556	490873	490873			1	
YQAVTATLEEK	1	Unmodified	1251.6347	0.63468237	1497	P40429;Q6NVV1	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.1	6.29	7	5	5			3	3	3	3	7	9	8	5	40.229	35.86	2	1.7397E-14	21214	160513_QHF_FH_JSI11Kac_4	149.23	129.47			0.90293	0.98001	59.667	27	11	Median	0.96983	0.83163	69.974	7	5	Median	0.84255	1.0146	65.137	8	3	Median	0.90293	0.93915	71.008	7	3	Median	0.97907	1.0705	12.483	5	0	Median	14508000000	7445100000	7063200000	3448200000	1587900000	1860300000	4001800000	2161200000	1840600000	4195600000	2182800000	2012800000	2862800000	1513200000	1349600000	59651	1497	56190	363557;363558;363559;363560;363561;363562;363563;363564;363565;363566;363567;363568;363569;363570;363571;363572;363573;363574;363575;363576;363577;363578;363579;363580;363581;363582;363583;363584;363585	490874;490875;490876;490877;490878;490879;490880;490881;490882;490883;490884;490885;490886;490887;490888;490889;490890;490891;490892;490893;490894;490895;490896;490897;490898;490899;490900;490901;490902;490903;490904;490905;490906;490907;490908;490909;490910;490911;490912;490913;490914;490915;490916;490917;490918;490919;490920;490921;490922;490923	490899			50	
YQAYMSNLESHSAILDQK	1	Unmodified	2096.9837	0.98370459	204	O14777	NDC80	Kinetochore protein NDC80 homolog	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.67	0.471		1	2								1	1	1	59.152	58.773	3	2.7614E-07	52091	160511_QHF_FH_JSI11i_3	105.06	96.67			1.2522	1.1887	43.895	3	1	Median	NaN	NaN	NaN	0	0	Median	0.5233	0.63965	NaN	1	1	Median	1.2522	1.1887	NaN	1	0	Median	1.4383	1.4941	NaN	1	0	Median	137810000	81529000	56280000	0	0	0	38273000	26651000	11621000	60914000	40732000	20182000	38621000	14145000	24476000	59652	204	56191	363586;363587;363588	490924;490925;490926;490927;490928;490929	490925			6	
YQDILVFR	0	Unmodified	1052.5655	0.56548059	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				64.36	63.427	2	0.0070664	55759	160511_QHF_FH_JSI9i_2	69.998	50.362			0.98629	0.86821	NaN	1	1	Median	0.98629	0.86821	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	127350000	69987000	57363000	127350000	69987000	57363000	0	0	0	0	0	0	0	0	0	59653	1163	56192	363589	490930	490930			1	
YQDLGAYSSAR	0	Unmodified	1229.5677	0.56766543	750	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.78	5.83	2	4					3			1	2	3	3	30.078	26.465	2	0.0014832	23006	160511_QHF_FH_JSI9i_2	63.283	50.656			0.96375	1.0424	20.858	9	2	Median	1.1783	0.99475	NaN	1	0	Median	0.82018	0.99101	13.043	2	0	Median	1.1365	1.1055	18.193	3	1	Plateau	1.5103	1.5863	21.602	3	1	Plateau	815910000	360260000	455660000	61286000	25931000	35356000	55325000	32097000	23229000	345430000	153940000	191500000	353870000	148290000	205580000	59654	750	56193	363590;363591;363592;363593;363594;363595;363596;363597;363598	490931;490932;490933;490934;490935;490936;490937;490938;490939	490936			9	
YQDTPGVK	1	Unmodified	906.4447	0.44469675	1798	P53396	ACLY	ATP-citrate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.696	4	3	1							3	2	1	2	11.486	10.959	2	0.00061167	8545	160511_QHF_FH_JSI11i_1	102.51	88.842			1.3705	1.5321	33.045	8	4	Median	2.5245	2.0252	27.629	3	2	Median	1.1992	1.4303	24.65	2	1	Median	1.0711	1.0411	NaN	1	0	Median	1.139	1.2526	28.322	2	1	Median	5360700000	2779300000	2581400000	1200100000	479660000	720430000	1537800000	894110000	643680000	1230600000	639130000	591520000	1392100000	766400000	625720000	59655	1798	56194	363599;363600;363601;363602;363603;363604;363605;363606	490940;490941;490942;490943;490944;490945;490946;490947;490948	490940			9	
YQEAAPNVANNTGPHAASCFGAK	1	Unmodified	2374.076	0.07604185	442	O60716	CTNND1	Catenin delta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	39.428	38.759	3	2.131E-17	33277	160511_QHF_FH_JSI11i_2	137.45	129.06			1.0193	1.0373	13.491	6	1	Median	0.98348	0.86805	NaN	1	0	Median	0.84256	1.0261	NaN	1	0	Median	1.013	0.98667	8.6204	2	0	Median	1.1361	1.2078	2.0473	2	1	Median	347620000	183960000	163660000	27874000	14048000	13826000	54868000	26119000	28749000	182110000	96979000	85133000	82764000	46811000	35953000	59656	442	56195	363607;363608;363609;363610;363611;363612	490949;490950;490951;490952;490953;490954;490955;490956;490957;490958;490959;490960;490961;490962;490963;490964	490959			16	
YQEALAK	1	Unmodified	821.42832	0.42831841	807	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	12.754	12.335	2	0.0072762	9957	160511_QHF_FH_JSI10i_1	88.029	34.319			1.1586	1.029	42.223	4	0	Median	1.0807	0.87926	NaN	1	0	Median	0.69926	0.81615	NaN	1	0	Median	1.2421	1.2044	NaN	1	0	Median	2.0081	2.0659	NaN	1	0	Median	1203700000	517920000	685770000	301730000	135150000	166580000	344880000	170480000	174410000	366930000	168860000	198070000	190150000	43436000	146710000	59657	807	56196	363613;363614;363615;363616	490965;490966;490967;490968	490967			4	
YQEALHLGSQLLR	0	Unmodified	1526.8205	0.82052608	109	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		59.584	59.584	2	0.00027791	52859	160511_QHF_FH_JSI11i_3	100.72	66.856			0.48692	0.46394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.48692	0.46394	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	26591000	20524000	6066500	0	0	0	0	0	0	26591000	20524000	6066500	0	0	0	59658	109	56197	363617	490969	490969			1	
YQEEFEHFQQELDK	1	Unmodified	1868.8217	0.82170787	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.89	0.314	1	8								2	2	3	2	57.339	56.458	2;3	7.0127E-31	49706	160511_QHF_FH_JSI10i_2	171.67	169.55			0.95578	0.96837	23.021	9	2	Median	1.3296	1.1311	32.143	2	1	Median	0.71301	0.87236	13.866	2	1	Median	0.95578	0.9868	32.116	3	0	Median	0.92556	1.0194	7.2632	2	0	Median	2275400000	1106600000	1168700000	422530000	126530000	296000000	641260000	317090000	324170000	720020000	382980000	337050000	491550000	280050000	211510000	59659	1648	56198	363618;363619;363620;363621;363622;363623;363624;363625;363626	490970;490971;490972;490973;490974;490975;490976;490977;490978;490979;490980;490981;490982;490983;490984;490985;490986	490983			17	
YQEELNFDNPLGMR	0	Unmodified	1724.7828	0.78281994	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			78.086	77.355	2	0.0086298	68878	160511_QHF_FH_JSI10i_2	59.418	37.954			0.66453	0.83805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.66453	0.83805	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11558000	8174900	3383600	0	0	0	11558000	8174900	3383600	0	0	0	0	0	0	59660	5626	56199	363627	490987	490987			1	
YQEGGVESAFHK	1	Unmodified	1350.6204	0.62042929	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.35		9	9					7	5	8	5	10	7	31.932	27.604	2;3	3.0489E-07	23234	160511_QHF_FH_JSI11i_2	128.28	104.85			1.0915	1.0873	31.118	29	12	Median	1.306	1.0983	38.434	8	2	Median	0.85812	0.98847	21.478	5	2	Median	1.1134	1.0962	34.735	9	4	Median	1.027	1.0732	29.516	7	4	Median	4541300000	2279200000	2262200000	956160000	470640000	485520000	906380000	524130000	382250000	1507300000	685390000	821930000	1171500000	599010000	572450000	59661	1490	56200	363628;363629;363630;363631;363632;363633;363634;363635;363636;363637;363638;363639;363640;363641;363642;363643;363644;363645;363646;363647;363648;363649;363650;363651;363652;363653;363654;363655;363656;363657	490988;490989;490990;490991;490992;490993;490994;490995;490996;490997;490998;490999;491000;491001;491002;491003;491004;491005;491006;491007;491008;491009;491010;491011;491012;491013;491014;491015;491016;491017;491018;491019;491020;491021;491022;491023;491024;491025;491026;491027;491028;491029;491030;491031;491032;491033;491034	491017			47	
YQEGGVESAFHKTSTGAPAAIK	2	Acetyl (K)	2290.123	0.12297527	1490	P40121	CAPG	Macrophage-capping protein	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		64.92	54	3	0.015083	29270	160513_QHF_FH_JSI11Kac_5	34.65	25.831			0.25073	0.24694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.25073	0.24694	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	36736000	28846000	7889400	0	0	0	0	0	0	36736000	28846000	7889400	0	0	0	59662	1490	56201	363658	491035	491035	1502		1	
YQEGVSAENPVENHINITQSDK	1	Unmodified	2471.1565	0.15646024	2873	Q58WW2	DCAF6	DDB1- and CUL4-associated factor 6	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	51.091	50.1	3	5.4649E-06	43259	160511_QHF_FH_JSI11i_2	64.87	56.48			0.87133	1.0043	29.344	3	1	Plateau	1.1421	1.0043	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.68907	0.68585	NaN	1	0	Median	1.1018	1.2213	NaN	1	0	Median	63786000	31770000	32015000	13227000	4249200	8977700	0	0	0	30405000	16502000	13903000	20154000	11019000	9134700	59663	2873	56202	363659;363660;363661	491036;491037;491038	491038			3	
YQELINDIAR	0	Unmodified	1233.6354	0.63535107	1600	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.624	5	6	1							1	3	4	4	52.162	51.333	2	1.3907E-05	43779	160511_QHF_FH_JSI12i_2	152.97	125.72			0.66197	0.6845	77.744	11	11	Median	0.52781	0.43273	NaN	1	1	Median	0.44964	0.55041	58.965	2	2	Median	0.7467	0.77046	38.698	4	4	Median	0.67822	0.73229	126.98	4	4	Median	4822000000	2918100000	1903900000	408130000	252830000	155300000	1067000000	644060000	422900000	2100200000	1235000000	865180000	1246700000	786190000	460560000	59664	1600	56203	363662;363663;363664;363665;363666;363667;363668;363669;363670;363671;363672;363673	491039;491040;491041;491042;491043;491044;491045;491046;491047;491048;491049;491050;491051;491052	491042			14	
YQEQGGEASPQR	0	Unmodified	1348.6008	0.60075648	5346	Q9UJU6	DBNL	Drebrin-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	8.6561	8.3053	2	7.3223E-11	6006	160511_QHF_FH_JSI11i_1	147.91	132.76			0.88145	0.88165	12.669	4	0	Median	1.3664	1.1327	NaN	1	0	Median	0.75658	0.87493	NaN	1	0	Median	0.90667	0.88717	NaN	1	0	Median	0.85693	0.87617	NaN	1	0	Median	369670000	202470000	167210000	98747000	41653000	57095000	99183000	63517000	35666000	83480000	44166000	39314000	88264000	53129000	35134000	59665	5346	56204	363674;363675;363676;363677	491053;491054;491055;491056;491057;491058;491059;491060	491054			8	
YQETFNVIER	0	Unmodified	1297.6303	0.63026569	2340	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.33	5.62	2	4	3					3		3	4	3	2	51.546	47.919	2	6.8502E-10	42008	160511_QHF_FH_JSI9i_2	138.22	123.07			0.94472	0.93101	7.028	11	1	Median	1.1698	0.99294	8.9441	3	0	Median	0.78982	0.93101	5.2403	3	0	Median	0.89705	0.90992	1.0069	3	0	Plateau	0.94643	1.0291	5.5509	2	1	Median	3245100000	1678700000	1566400000	571890000	268550000	303340000	706710000	384910000	321800000	896570000	469810000	426760000	1069900000	555440000	514490000	59666	2340	56205	363678;363679;363680;363681;363682;363683;363684;363685;363686;363687;363688;363689	491061;491062;491063;491064;491065;491066;491067;491068;491069;491070;491071;491072;491073;491074;491075;491076	491070			16	
YQEVTNNLEFAK	1	Unmodified	1454.7042	0.70415892	2536	Q14444	CAPRIN1	Caprin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.58	4	5	1				4			2	4	4	4	51.554	47.776	2	1.1322E-15	26728	160513_QHF_FH_JSI12Kac_4	140.07	101.99			0.89436	0.91192	26.075	14	6	Median	1.1734	0.9722	31.655	2	1	Median	0.75851	0.88695	23.352	4	1	Median	0.91786	0.90964	27.187	4	2	Median	0.925	0.99761	33.754	4	2	Median	5960500000	3203300000	2757200000	1492700000	721010000	771640000	1523100000	857200000	665850000	1431300000	716390000	714890000	1513500000	908650000	604830000	59667	2536	56206	363690;363691;363692;363693;363694;363695;363696;363697;363698;363699;363700;363701;363702;363703	491077;491078;491079;491080;491081;491082;491083;491084;491085;491086;491087;491088;491089;491090;491091;491092;491093;491094;491095;491096;491097;491098	491096			22	
YQEYIPVQTGAHADLNPFYQK	1	Unmodified	2481.1965	0.19647456	3267	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	75.139	73.878	3	0.00012287	63728	160511_QHF_FH_JSI12i_2	56.529	48.725			0.68898	0.78612	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.68898	0.78612	NaN	1	1	Median	35202000	21971000	13231000	0	0	0	0	0	0	0	0	0	35202000	21971000	13231000	59668	3267	56207	363704	491099	491099			1	
YQFDPNLGIR	0	Unmodified	1221.6142	0.6142217	2997	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	2	1	1	63.92	63.029	2	0.0029403	55948	160511_QHF_FH_JSI10i_2	71.501	23.653			0.97795	1.0624	7.7404	5	4	Median	1.4149	1.2042	NaN	1	1	Median	0.81288	1.0161	6.2991	2	2	Median	1.0364	1.0479	NaN	1	1	Median	0.97795	1.0887	NaN	1	0	Median	515190000	248420000	266770000	83245000	31585000	51660000	183560000	101380000	82177000	142110000	65086000	77021000	106280000	50366000	55916000	59669	2997	56208	363705;363706;363707;363708;363709	491100;491101;491102;491103;491104;491105	491105			6	
YQFLCLK	1	Unmodified	970.49462	0.49462383	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		61.375	60.864	2	0.02833	52857	160511_QHF_FH_JSI11i_2	55.441	35.159			0.30511	0.30722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.30511	0.30722	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	24396000	19794000	4602100	0	0	0	0	0	0	24396000	19794000	4602100	0	0	0	59670	2712	56209	363710	491106	491106			1	
YQFLEEAFQNQK	1	Unmodified	1543.7307	0.73070802	5461	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		7									1	2	4	67.668	66.606	2	1.7746E-28	60281	160511_QHF_FH_JSI10i_2	161.76	0			1.0199	1.1195	26.589	6	6	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1405	1.1265	44.453	2	2	Median	1.0199	1.1195	22.762	4	4	Median	156820000	74279000	82538000	0	0	0	0	0	0	59557000	24681000	34876000	97261000	49599000	47662000	59671	5461	56210	363711;363712;363713;363714;363715;363716;363717	491107;491108;491109;491110;491111;491112;491113	491113			7	
YQFSLSSTEK	1	Unmodified	1188.5663	0.56626845	5142	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	46.481	45.531	2	0.00093589	39159	160511_QHF_FH_JSI11i_2	81.338	63.952			0.78887	0.81654	52.194	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56921	0.56453	NaN	1	1	Median	1.0933	1.181	NaN	1	1	Median	77137000	44522000	32615000	0	0	0	0	0	0	54301000	35777000	18524000	22836000	8744900	14091000	59672	5142	56211	363718;363719	491114;491115	491115			2	
YQGDGIVEDEEETMENNEEK	1	Unmodified	2356.9489	0.94889481	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	7										3	2	2	54.196	53.718	2;3	8.9468E-68	48476	160511_QHF_FH_JSI10i_1	233.52	228.44			0.89852	0.99306	43.658	6	2	Median	NaN	NaN	NaN	0	0	Median	0.98399	1.1665	44.226	3	1	Median	0.80789	0.78529	39.4	2	1	Median	0.82047	0.84163	NaN	1	0	Median	414270000	227790000	186480000	0	0	0	183740000	80212000	103520000	84893000	50784000	34109000	145640000	96789000	48850000	59673	5124	56212	363720;363721;363722;363723;363724;363725;363726	491116;491117;491118;491119;491120;491121	491119			6	
YQGDGIVEDEEETMENNEEKK	2	Unmodified	2485.0439	0.043857827	5124	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	yes	yes	0	0	0	1		By MS/MS		By matching	1	0	2										1		1	49.777	49.234	3	8.6355E-07	44289	160511_QHF_FH_JSI10i_1	79.143	71.867			0.94139	1.0542	26.634	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0771	1.2727	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.82276	0.87327	NaN	1	0	Median	154450000	80410000	74037000	0	0	0	45946000	20183000	25763000	0	0	0	108500000	60227000	48274000	59674	5124	56213	363727;363728	491122	491122			1	
YQGGFLISR	0	Unmodified	1039.5451	0.5450795	1862	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By matching	9.5	6.5			2						2	1	2		1	53.309	47.919	2	0.014318	39355	160511_QHF_FH_JSI9i_3	45.489	34.616			1.0513	1.0635	13.014	4	0	Median	1.2295	0.98256	NaN	1	0	Median	0.90049	1.0635	2.5351	2	0	Median	NaN	NaN	NaN	0	0	Median	1.2129	1.3268	NaN	1	0	Median	493420000	239600000	253820000	207360000	92065000	115290000	273140000	141630000	131500000	0	0	0	12922000	5898500	7023100	59675	1862	56214	363729;363730;363731;363732	491123;491124	491123			2	
YQGVNLYIK	1	Unmodified	1096.5917	0.59169534	2385	Q13310	PABPC4	Polyadenylate-binding protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.92	6.51		4	3					2	3	3	3	3	3	56.559	51.819	2	1.8768E-06	44462	160511_QHF_FH_JSI12i_2	129.47	114.69			0.90224	0.9305	39.095	12	3	Median	0.93513	0.796	11.799	3	1	Median	0.81044	1.0071	42.007	3	0	Median	0.95624	0.94689	40.025	3	1	Median	0.83484	0.94744	53.069	3	1	Median	1178100000	647420000	530650000	266710000	137670000	129040000	226120000	124580000	101540000	333530000	169170000	164360000	351710000	216010000	135710000	59676	2385	56215	363733;363734;363735;363736;363737;363738;363739;363740;363741;363742;363743;363744	491125;491126;491127;491128;491129;491130;491131;491132;491133;491134;491135;491136;491137	491126			13	
YQGVNLYVK	1	Unmodified	1082.576	0.57604528	1009	P11940;Q4VXU2	PABPC1;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.26	6.59	4	4	4				3	4	4	5	6	6	6	49.614	44.563	2	3.1562E-07	23163	160513_QHF_FH_JSI12Kac_6	138.9	98.792			1.06	1.0128	10.814	22	0	Median	1.1837	1.001	4.7742	5	0	Median	0.85112	1.0195	6.3057	6	0	Median	1.0803	1.0246	8.4386	5	0	Median	0.99954	1.0518	19.378	6	0	Median	5515000000	2559300000	2955700000	810930000	362490000	448440000	1247900000	602230000	645650000	1989100000	875540000	1113600000	1467000000	719010000	748020000	59677	1009	56216	363745;363746;363747;363748;363749;363750;363751;363752;363753;363754;363755;363756;363757;363758;363759;363760;363761;363762;363763;363764;363765;363766;363767	491138;491139;491140;491141;491142;491143;491144;491145;491146;491147;491148;491149;491150;491151;491152;491153;491154;491155;491156;491157;491158;491159;491160;491161;491162;491163;491164;491165;491166;491167;491168;491169;491170;491171;491172;491173	491171			36	
YQGYIGAALVLGGVDVTGPHLYSIYPHGSTDK	1	Unmodified	3347.6826	0.6826422	4267	Q99436	PSMB7	Proteasome subunit beta type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	89.765	81.47	3;4	1.6202E-208	47073	160513_QHF_FH_JSI10Kac_6	290.28	272.9			1.0537	1.0748	28.109	8	0	Median	1.1988	1.0314	18.594	2	0	Median	0.64415	0.76368	27.525	2	0	Median	1.5448	1.4668	10.594	2	0	Median	1.0208	1.0748	6.1414	2	0	Median	2106800000	1062500000	1044300000	446840000	219540000	227300000	773690000	480200000	293490000	558150000	199540000	358610000	328100000	163200000	164900000	59678	4267	56217	363768;363769;363770;363771;363772;363773;363774;363775	491174;491175;491176;491177;491178;491179;491180;491181;491182;491183;491184;491185;491186;491187;491188;491189	491187			16	
YQHLITNSFVECNR	0	Unmodified	1779.8363	0.8362525	5641	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			46.469	44.907	3	0.0087094	37500	160511_QHF_FH_JSI10i_3	37.555	24.763			1.9678	2.2399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.9678	2.2399	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	11978000	4597000	7381200	0	0	0	11978000	4597000	7381200	0	0	0	0	0	0	59679	5641	56218	363776	491190	491190			1	
YQHLKGK	2	Acetyl (K)	914.4974	0.49740102	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		10.976	1.6441	3	0.034931	3954	160513_QHF_FH_JSI11Kac_6	34.808	18.605			0.28938	0.28916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28938	0.28916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	34945000	27798000	7146700	0	0	0	0	0	0	34945000	27798000	7146700	0	0	0	59680	1283	56219	363777	491191	491191			1	
YQIDDKPNNQIR	1	Unmodified	1502.7478	0.74775506	4890	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.83	0.373		1	5							1		2	3	25.661	25.645	2;3	2.7773E-06	21342	160511_QHF_FH_JSI12i_3	111.06	91.295			0.75689	0.74212	7.7792	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81625	0.769	2.4658	2	2	Median	0.67457	0.69029	7.6727	2	2	Median	381660000	256700000	124960000	0	0	0	0	0	0	187190000	128690000	58502000	194470000	128010000	66463000	59681	4890	56220	363778;363779;363780;363781;363782;363783	491192;491193;491194;491195;491196;491197	491197			6	
YQIDPDACFSAK	1	Unmodified	1413.6235	0.62346575	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	4.86	5.79	4	1					2			1	3	1	2	55.161	52.779	2	5.7588E-06	48029	160511_QHF_FH_JSI12i_1	133.89	118.63			0.91084	0.92741	20.264	6	1	Median	1.0177	0.82749	NaN	1	0	Median	0.77124	0.92741	4.7236	2	1	Median	0.81518	0.79404	NaN	1	0	Median	1.1873	1.2571	1.1338	2	0	Median	2182200000	1160600000	1021600000	293510000	148800000	144720000	549820000	331180000	218640000	739000000	380750000	358260000	599850000	299880000	299970000	59682	1195	56221	363784;363785;363786;363787;363788;363789;363790	491198;491199;491200;491201;491202;491203;491204;491205;491206;491207;491208	491202			11	
YQIHIPLPPK	1	Unmodified	1204.6968	0.69682911	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.24	0.426		32	10							8	11	10	13	63.826	62.931	2;3	1.2731E-05	55360	160511_QHF_FH_JSI11i_3	103.74	92.146			0.86063	0.90874	19.403	15	7	Median	0.98488	0.832	14.534	2	1	Median	0.8118	0.9813	16.861	5	2	Median	1.1196	1.0642	NaN	1	0	Median	0.83374	0.90708	23.809	7	4	Median	983040000	470110000	512930000	70097000	31310000	38787000	215940000	114450000	101490000	207950000	93115000	114830000	489050000	231240000	257810000	59683	1449	56222	363791;363792;363793;363794;363795;363796;363797;363798;363799;363800;363801;363802;363803;363804;363805;363806;363807;363808;363809;363810;363811;363812;363813;363814;363815;363816;363817;363818;363819;363820;363821;363822;363823;363824;363825;363826;363827;363828;363829;363830;363831;363832	491209;491210;491211;491212;491213;491214;491215;491216;491217;491218;491219;491220;491221;491222;491223;491224;491225;491226;491227;491228;491229;491230;491231;491232;491233;491234;491235;491236;491237;491238;491239;491240;491241;491242;491243;491244;491245;491246;491247;491248;491249;491250;491251;491252;491253;491254;491255;491256;491257;491258;491259;491260;491261;491262;491263;491264;491265;491266;491267;491268;491269;491270;491271;491272;491273;491274	491219			66	
YQILPLHSQIPR	0	Unmodified	1463.8249	0.82488317	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.74	4.9		6	10						3	5	3	7	4	60.162	58.473	2;3	1.7629E-11	49016	160511_QHF_FH_JSI10i_3	149.49	144.41			0.79414	0.78795	15.569	18	5	Median	1.032	0.83193	11.965	5	0	Median	0.69547	0.78219	6.02	3	0	Median	0.95019	0.92372	19.242	6	3	Median	0.66992	0.70985	8.9607	4	2	Median	3547300000	1933200000	1614200000	665880000	313560000	352320000	736710000	459730000	276980000	1367900000	683010000	684930000	776800000	476880000	299930000	59684	2265	56223	363833;363834;363835;363836;363837;363838;363839;363840;363841;363842;363843;363844;363845;363846;363847;363848;363849;363850;363851	491275;491276;491277;491278;491279;491280;491281;491282;491283;491284;491285;491286;491287;491288;491289;491290;491291;491292;491293;491294;491295;491296;491297;491298	491281			24	
YQINNISTVPK	1	Unmodified	1275.6823	0.68230126	2253	Q07157	TJP1	Tight junction protein ZO-1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By matching	2	0		3								1		1	1	45.906	44.923	2	0.0034222	38617	160511_QHF_FH_JSI11i_2	68.626	37.552			1.3598	1.197	47.617	3	1	Median	1.3598	1.197	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.5133	2.6515	NaN	1	1	Median	1.0124	1.1317	NaN	1	0	Median	109570000	43664000	65908000	35999000	14547000	21452000	0	0	0	39321000	10804000	28517000	34252000	18313000	15939000	59685	2253	56224	363852;363853;363854	491299;491300	491300			2	
YQIQEHQPK	1	Unmodified	1169.5829	0.58292157	569	O75818	RPP40	Ribonuclease P protein subunit p40	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		12.76	12.76	3	0.010918	10239	160511_QHF_FH_JSI11i_3	44.318	36.672			0.71304	0.64425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.71304	0.64425	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	52227000	29508000	22719000	0	0	0	0	0	0	52227000	29508000	22719000	0	0	0	59686	569	56225	363855	491301	491301			1	
YQLDPTASISAK	1	Unmodified	1292.6612	0.66123147	1570	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.05	5.68	4	5	5			2	3	2		4	4	6	7	53.107	49.444	2	8.3171E-23	45172	160511_QHF_FH_JSI12i_1	175.86	145.61			0.91456	0.91279	33.493	20	7	Plateau	1.2099	0.98701	69.222	4	1	Median	0.74292	0.90763	25.479	4	0	Median	1.0379	1.0043	15.033	6	3	Median	1.109	1.1975	15.12	6	3	Median	11246000000	5232400000	6013400000	2827100000	1202800000	1624300000	2736800000	1399800000	1337100000	3063800000	1338800000	1725000000	2618100000	1291000000	1327100000	59687	1570	56226	363856;363857;363858;363859;363860;363861;363862;363863;363864;363865;363866;363867;363868;363869;363870;363871;363872;363873;363874;363875;363876	491302;491303;491304;491305;491306;491307;491308;491309;491310;491311;491312;491313;491314;491315;491316;491317;491318;491319;491320;491321;491322;491323;491324;491325;491326;491327;491328;491329;491330;491331;491332;491333;491334;491335	491312			34	
YQLEIPENFTTR	0	Unmodified	1509.7464	0.74635808	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	1	2		74.152	73.416	2	1.2681E-06	64439	160511_QHF_FH_JSI11i_2	101.93	86.778			0.83982	0.78689	8.9429	3	3	Median	0.84307	0.71754	NaN	1	1	Median	0.63261	0.78689	NaN	1	1	Median	0.83982	0.85804	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	378160000	202440000	175720000	84065000	44725000	39340000	102850000	63663000	39190000	191250000	94053000	97193000	0	0	0	59688	1778	56227	363877;363878;363879;363880	491336;491337;491338;491339;491340	491339			5	
YQLFAFISHMGTSTMCGHYVCHIK	1	Unmodified	2887.3067	0.30665219	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				83.032	74.414	5	1.8017E-05	40702	160513_QHF_FH_JSI9Kac_6	96.54	93.762			0.60424	0.52457	NaN	1	1	Median	0.60424	0.52457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	64144000	46624000	17520000	64144000	46624000	17520000	0	0	0	0	0	0	0	0	0	59689	1573	56228	363881	491341	491341			1	
YQLLQLVEPFGVISNHLILNK	1	Unmodified	2437.3733	0.37331671	1556	P43243	MATR3	Matrin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.25	6.56		2	5						5	4	3	2	3	100.05	96.45	2;3	1.2754E-146	52811	160513_QHF_FH_JSI10Kac_6	268.9	244.6			0.82927	0.89138	11.655	12	2	Plateau	0.93397	0.77552	9.1836	4	2	Median	0.7185	0.84299	10.017	3	0	Median	0.97114	0.92339	4.9881	2	0	Median	0.8236	0.84827	15.955	3	0	Median	10914000000	6033400000	4880300000	1714100000	915160000	798930000	1696600000	985470000	711180000	2879800000	1464900000	1414900000	4623200000	2667900000	1955300000	59690	1556	56229	363882;363883;363884;363885;363886;363887;363888;363889;363890;363891;363892;363893	491342;491343;491344;491345;491346;491347;491348;491349;491350;491351;491352;491353;491354;491355;491356;491357;491358;491359;491360;491361	491361			20	
YQLLVYHADSLFHDK	1	Unmodified	1847.9206	0.92063405	5351	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	2	2	2	4	74.225	68.325	3;4	5.4903E-17	37304	160513_QHF_FH_JSI10Kac_6	137.19	122.27			0.9912	0.91902	24.73	10	1	Median	0.9912	0.85921	0.63788	2	0	Median	0.7807	0.89822	2.1894	2	0	Median	1.153	1.1009	37.446	2	0	Median	1.2641	1.3474	21.587	4	1	Median	782380000	336620000	445770000	196590000	75337000	121250000	296880000	138250000	158630000	114550000	59846000	54708000	174360000	63186000	111170000	59691	5351	56230	363894;363895;363896;363897;363898;363899;363900;363901;363902;363903	491362;491363;491364;491365;491366;491367;491368;491369;491370;491371;491372	491372			11	
YQLNLFAR	0	Unmodified	1023.5502	0.55016488	2549;2546	Q14571;Q14643	ITPR2;ITPR1	Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1	no	no	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	65.84	64.946	2	0.009583	56072	160511_QHF_FH_JSI12i_3	55.902	18.927			0.96964	1.0373	3.0794	2	0	Median	NaN	NaN	NaN	0	0	Median	0.92654	1.0601	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0148	1.0149	NaN	1	0	Median	165190000	85411000	79777000	0	0	0	60319000	28612000	31706000	0	0	0	104870000	56799000	48071000	59692	2546;2549	56231	363904;363905	491373	491373			1	
YQLQSQEETK	1	Unmodified	1252.5935	0.59354583	3643	Q8NEY1	NAV1	Neuron navigator 1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		17.579	17.459	2	0.0050947	14797	160511_QHF_FH_JSI11i_1	56.563	43.936			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59693	3643	56232	363906	491374	491374			1	
YQLSIHK	1	Unmodified	887.4865	0.48650199	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.84	6.3		8	9						8	7	7	5	6	28.846	25.213	2;3	0.0024373	21080	160511_QHF_FH_JSI11i_3	111.01	80.289			0.98505	0.9998	44.565	23	9	Median	1.2665	1.0633	37.239	6	2	Median	0.83093	0.97707	36.349	6	4	Median	0.98505	0.92557	39.661	5	2	Median	0.99397	1.0337	67.72	6	1	Median	6638400000	3168400000	3470000000	805880000	347680000	458200000	1027300000	506790000	520500000	1718600000	726200000	992370000	3086600000	1587700000	1498900000	59694	821	56233	363907;363908;363909;363910;363911;363912;363913;363914;363915;363916;363917;363918;363919;363920;363921;363922;363923;363924;363925;363926;363927;363928;363929;363930;363931	491375;491376;491377;491378;491379;491380;491381;491382;491383;491384;491385;491386;491387;491388;491389;491390;491391;491392;491393;491394;491395;491396;491397;491398;491399;491400;491401;491402	491376			28	
YQLSIHKNPNTSEPQHLLVMK	2	Acetyl (K)	2518.3002	0.30022813	821	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		73.534	64.151	4	4.5505E-13	34873	160513_QHF_FH_JSI11Kac_6	107.74	96.119			0.23316	0.2269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.23316	0.2269	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	45218000	37784000	7433200	0	0	0	0	0	0	45218000	37784000	7433200	0	0	0	59695	821	56234	363932	491403	491403	469;470		1	
YQLSSEAAK	1	Unmodified	995.49238	0.49237523	4967	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	yes	yes	0	0	0	0			By matching	By MS/MS	1	0	2											1	1	18.866	18.565	2	0.030514	16120	160511_QHF_FH_JSI12i_1	40.067	8.1123			0.58483	0.59313	10.491	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66526	0.6388	NaN	1	0	Median	0.51413	0.55072	NaN	1	0	Median	72059000	42644000	29414000	0	0	0	0	0	0	35619000	19438000	16181000	36440000	23206000	13233000	59696	4967	56235	363933;363934	491404	491404			1	
YQMGDQNVYPGPIDNSGLLK	1	Unmodified	2208.0521	0.05211851	5626	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	1	2	2	77.946	77.487	2	1.973E-11	68877	160511_QHF_FH_JSI9i_1	109.84	94.082			0.81873	0.8752	20.472	6	6	Median	0.67821	0.55413	NaN	1	1	Median	0.76966	0.8604	NaN	1	1	Median	0.98051	0.94068	5.5969	2	2	Median	0.79541	0.81971	11.676	2	2	Median	112570000	65842000	46728000	14953000	10437000	4516200	18493000	12769000	5723800	40987000	20912000	20074000	38137000	21723000	16414000	59697	5626	56236	363935;363936;363937;363938;363939;363940;363941	491405;491406;491407;491408;491409;491410;491411	491411			7	
YQMLAFVHK	1	Unmodified	1135.5848	0.58483582	5545	Q9Y2X7	GIT1	ARF GTPase-activating protein GIT1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	9.5	6.5			1						1			1	1	57.335	52.368	2;3	4.511E-05	44620	160511_QHF_FH_JSI12i_3	85.731	77.805			0.73255	0.73061	39.153	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.56491	0.55392	NaN	1	1	Median	0.94994	0.96365	NaN	1	0	Median	108400000	47949000	60449000	0	0	0	0	0	0	6619800	4483100	2136700	101780000	43466000	58312000	59698	5545	56237	363942;363943	491412;491413;491414	491414			3	
YQNIWNINLQLRPSLITGIMK	1	Unmodified	2514.3781	0.37808452	5526	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	94.234	86.778	2;3	3.4119E-104	50594	160513_QHF_FH_JSI10Kac_6	259.98	232.95			0.83985	0.89801	14.899	4	0	Median	1.0499	0.91661	NaN	1	0	Median	0.66463	0.78927	15.353	2	0	Median	NaN	NaN	NaN	0	0	Median	0.94437	1.0068	NaN	1	0	Median	1421500000	840790000	580660000	303270000	141660000	161610000	949630000	601180000	348450000	0	0	0	168560000	97953000	70609000	59699	5526	56238	363944;363945;363946;363947	491415;491416;491417;491418;491419;491420	491420			6	
YQNLLPLFVGHNMLLVSEEPK	1	Unmodified	2440.2825	0.2824528	3297	Q7Z7H8	MRPL10	39S ribosomal protein L10, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	101.4	101.41	3	9.7295E-28	90447	160511_QHF_FH_JSI11i_3	195.18	181.17			1.3012	1.2759	0.083309	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3538	1.2766	NaN	1	1	Median	1.2506	1.2751	NaN	1	0	Median	646130000	253670000	392460000	0	0	0	0	0	0	277620000	98984000	178630000	368510000	154690000	213830000	59700	3297	56239	363948;363949	491421;491422	491421			2	
YQNSEEK	1	Unmodified	896.38758	0.3875758	8	A0MZ66	KIAA1598	Shootin-1	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	1	0	4										1	1	2	4.6067	4.3512	2	0.0059444	2139	160511_QHF_FH_JSI12i_1	95.352	64.634			0.54705	0.59838	57.989	4	1	Median	NaN	NaN	NaN	0	0	Median	0.7281	0.84516	NaN	1	0	Median	0.30915	0.30005	NaN	1	0	Median	0.64514	0.66182	63.083	2	1	Median	394270000	254550000	139720000	0	0	0	115380000	77307000	38072000	81301000	61308000	19993000	197590000	115930000	81653000	59701	8	56240	363950;363951;363952;363953	491423;491424	491423			2	
YQNYIMEGVK	1	Unmodified	1243.5907	0.59070906	5644	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	47.124	45.728	2	0.00034398	39253	160511_QHF_FH_JSI11i_2	87.149	56.585			1.3001	1.4648	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3001	1.4648	NaN	1	1	Median	112730000	49243000	63483000	0	0	0	0	0	0	0	0	0	112730000	49243000	63483000	59702	5644	56241	363954;363955	491425;491426	491426			2	
YQPCLPSTQEDVINK	1	Unmodified	1790.8509	0.85089951	4221	Q96RP9	GFM1	Elongation factor G, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	55.957	55.542	2	7.465E-07	50309	160511_QHF_FH_JSI11i_1	140.39	117.02			0.45942	0.44627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.45942	0.44627	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	28440000	21657000	6783200	0	0	0	0	0	0	28440000	21657000	6783200	0	0	0	59703	4221	56242	363956;363957	491427;491428	491427			2	
YQPFKPLSIGGIIILK	2	Unmodified	1786.0757	0.075678131	4272	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	yes	yes	0	0	0	1	By MS/MS		By MS/MS		9.5	6.5			1						1	1		1		95.98	91.202	2;3	0.00041668	81879	160511_QHF_FH_JSI9i_3	60.209	55.405			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59704	4272	56243	363958;363959	491429;491430	491430			2	
YQPLASTASDNDFVTPEPR	0	Unmodified	2106.9858	0.98581308	2605	Q15021	NCAPD2	Condensin complex subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	62.352	61.718	2	9.0068E-15	56058	160511_QHF_FH_JSI11i_1	155.09	143.99			0.96276	0.86608	10.788	4	0	Median	1.0013	0.81572	NaN	1	0	Median	0.71257	0.82998	NaN	1	0	Median	0.92571	0.90374	NaN	1	0	Median	1.0028	1.0331	NaN	1	0	Median	296910000	156500000	140420000	52096000	23525000	28571000	87287000	49648000	37639000	86234000	44740000	41494000	71297000	38585000	32712000	59705	2605	56244	363960;363961;363962;363963	491431;491432;491433;491434;491435;491436;491437;491438;491439;491440	491432			10	
YQQAGLPLIVLAGK	1	Unmodified	1469.8606	0.86059998	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	4.94		8	5					3		4	5	4	3	88.823	86.26	2;3	3.5357E-06	76806	160511_QHF_FH_JSI12i_2	121.6	111.6			0.81348	0.84352	54.747	15	9	Median	0.48577	1.193	64.052	4	3	Linear	0.62881	0.73923	38.587	4	2	Median	1.0288	1.0313	36.553	4	2	Median	0.69561	0.80224	80.28	3	2	Median	1075900000	735840000	340090000	226110000	162820000	63294000	224070000	163230000	60846000	277150000	144510000	132640000	348600000	265290000	83310000	59706	1194	56245	363964;363965;363966;363967;363968;363969;363970;363971;363972;363973;363974;363975;363976;363977;363978;363979	491441;491442;491443;491444;491445;491446;491447;491448;491449;491450;491451;491452;491453;491454;491455;491456;491457;491458;491459;491460;491461;491462;491463;491464	491446			24	
YQQELEEEIK	1	Unmodified	1307.6245	0.62451161	3036	Q6DD88	ATL3	Atlastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	36.562	36.025	2	1.0298E-06	32215	160511_QHF_FH_JSI11i_1	125.68	108.56			2.0467	2.0153	81.577	5	5	Median	4.7458	3.9503	NaN	1	1	Median	1.5755	1.876	NaN	1	1	Median	0.96494	0.94923	106.47	2	2	Median	2.3203	2.4462	NaN	1	1	Median	982000000	447780000	534220000	95318000	17984000	77334000	181950000	86956000	94989000	483590000	261440000	222160000	221140000	81406000	139730000	59707	3036	56246	363980;363981;363982;363983;363984	491465;491466;491467;491468;491469	491465			5	
YQQFKDFQR	1	Acetyl (K)	1300.62	0.62003536	2474;97	Q13838;O00148	DDX39B;DDX39A	Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A	no	no	1	0	0	1		By matching	By MS/MS		15	0								2			1	1		50.568	40.088	2	3.104E-05	22350	160513_QHF_FH_JSI11Kac_5	128.36	120.98			0.54742	0.59396	101.95	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0319	1.2214	NaN	1	0	Median	0.29039	0.28885	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	24484000	18374000	6110000	0	0	0	3973800	1919000	2054800	20510000	16455000	4055300	0	0	0	59708	2474;97	56247	363985;363986	491470	491470	66		1	
YQQFPEFK	1	Unmodified	1085.5182	0.51819605	3215	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.67	0.471	2	4								1	2	2	1	47.129	46.335	2	0.0059685	39660	160511_QHF_FH_JSI12i_2	72.492	57.053			0.6512	0.74679	20.008	6	5	Median	0.60515	0.50684	NaN	1	1	Median	0.57242	0.6873	24.554	2	1	Median	0.80924	0.79969	2.1561	2	2	Median	0.62635	0.70811	NaN	1	1	Median	503090000	243250000	259840000	73903000	35473000	38431000	143410000	63240000	80168000	193940000	91834000	102110000	91835000	52705000	39130000	59709	3215	56248	363987;363988;363989;363990;363991;363992	491471;491472;491473;491474;491475;491476	491472			6	
YQQGDFGYCPR	0	Unmodified	1389.5772	0.57718426	2068	P67870	CSNK2B	Casein kinase II subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	36.144	35.235	2	3.4747E-05	30074	160511_QHF_FH_JSI11i_2	98.033	96.836			0.8111	0.80994	26.003	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.96341	1.1723	NaN	1	0	Median	0.8111	0.8072	NaN	1	0	Median	1.2201	1.3313	NaN	1	0	Median	94668000	44405000	50262000	0	0	0	26853000	10686000	16167000	46353000	25235000	21118000	21462000	8484800	12977000	59710	2068	56249	363993;363994;363995	491477;491478;491479;491480;491481;491482	491480			6	
YQQLFEDIR	0	Unmodified	1210.5982	0.59823728	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								1	1	2	1	55.689	54.825	2	7.0397E-05	47036	160511_QHF_FH_JSI12i_2	114.89	79.599			0.4888	0.41532	53.995	5	5	Median	0.4888	0.41532	NaN	1	1	Median	0.29806	0.36717	NaN	1	1	Median	0.59701	0.59896	93.567	2	2	Median	0.61455	0.6889	NaN	1	1	Median	603280000	339520000	263760000	65295000	41975000	23320000	71887000	47990000	23897000	375580000	196990000	178580000	90522000	52564000	37958000	59711	1409	56250	363996;363997;363998;363999;364000	491483;491484;491485;491486;491487	491483			5	
YQQLFEDIRGQSDIAITK	1	Unmodified	2124.0851	0.085133198	1409	P33991	MCM4	DNA replication licensing factor MCM4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.33	0.471		2	1							1	1	1		71.061	70.515	3	3.3356E-06	62652	160511_QHF_FH_JSI10i_2	100.97	90.105			0.43223	0.38247	86.833	3	3	Median	0.43223	0.38247	NaN	1	1	Median	0.21427	0.26542	NaN	1	1	Median	1.4562	1.3862	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	446440000	198880000	247560000	46193000	24493000	21700000	79702000	61204000	18497000	320540000	113180000	207360000	0	0	0	59712	1409	56251	364001;364002;364003	491488;491489;491490	491490			3	
YQQLQKDLSK	2	Acetyl (K)	1291.6772	0.67721588	263	O15212	PFDN6	Prefoldin subunit 6	yes	yes	1	0	0	1			By MS/MS		13	0						1						1		43.607	34.397	2	0.0038399	19477	160513_QHF_FH_JSI11Kac_3	77.662	49.92			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59713	263	56252	364004	491491	491491	145		1	
YQQPFEDFR	0	Unmodified	1228.5513	0.55128709	1152	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	48.892	47.932	2	0.00048844	41270	160511_QHF_FH_JSI11i_2	89.752	79.229			0.74883	0.83158	8.3726	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.74542	0.92581	NaN	1	1	Median	0.74883	0.78606	NaN	1	1	Median	0.80064	0.87974	NaN	1	0	Median	79206000	47938000	31267000	0	0	0	19615000	11515000	8100500	37623000	22748000	14874000	21968000	13675000	8292600	59714	1152	56253	364005;364006;364007	491492;491493;491494;491495	491494			4	
YQSALLPHK	1	Unmodified	1055.5764	0.57637963	4617	Q9H061	TMEM126A	Transmembrane protein 126A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			9							3	2	2	2	27.547	26.769	2;3	0.00038973	22718	160511_QHF_FH_JSI11i_3	85.676	57.164			0.99406	1.0331	56.542	7	2	Median	1.7212	1.4012	102.21	2	1	Median	1.0262	1.179	3.336	2	0	Median	0.61379	0.56774	NaN	1	0	Median	0.76574	0.7841	39.002	2	1	Median	596690000	300960000	295730000	96954000	44565000	52389000	160570000	69695000	90880000	114170000	56460000	57706000	225000000	130240000	94759000	59715	4617	56254	364008;364009;364010;364011;364012;364013;364014;364015;364016	491496;491497;491498;491499;491500;491501;491502;491503	491497			8	
YQSAPSQAPGNTIER	0	Unmodified	1617.7747	0.7746981	3378	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.6	5.2	4						1			1	1	2	1	24.316	23.765	2	0.00032418	20726	160511_QHF_FH_JSI11i_1	97.911	91.252			0.96827	0.90795	17.776	4	0	Median	1.1592	0.96601	NaN	1	0	Median	0.67356	0.7643	NaN	1	0	Median	1.214	1.1568	NaN	1	0	Median	0.80881	0.85338	NaN	1	0	Median	135100000	65345000	69759000	23161000	10225000	12936000	23711000	12959000	10751000	39248000	15200000	24048000	48984000	26960000	22023000	59716	3378	56255	364017;364018;364019;364020;364021	491504;491505;491506;491507;491508;491509	491504			6	
YQSFNNQSDLEK	1	Unmodified	1471.6579	0.657937	1669	P49642	PRIM1	DNA primase small subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	28.058	27.557	2	4.0666E-05	24361	160511_QHF_FH_JSI11i_1	111.94	71.585			0.7796	0.76332	52.862	4	4	Median	0.75196	0.6042	NaN	1	1	Median	0.64545	0.76687	NaN	1	1	Median	1.3046	1.2283	67.931	2	2	Median	NaN	NaN	NaN	0	0	Median	248620000	131560000	117060000	39359000	24276000	15083000	74646000	48864000	25782000	134610000	58421000	76191000	0	0	0	59717	1669	56256	364022;364023;364024;364025;364026	491510;491511;491512;491513;491514	491511			5	
YQSHDYAFSSVEK	1	Unmodified	1559.6892	0.68923713	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.16	5.61		11	4						4	4	3	7	5	34.985	32.291	2;3	9.1128E-07	27869	160511_QHF_FH_JSI11i_3	128.85	121.72			1.0791	1.0417	23.902	16	4	Median	1.0044	0.85407	11.09	3	1	Plateau	0.7409	0.90219	10.757	3	1	Median	1.0969	1.0742	15.365	5	0	Median	1.1128	1.2209	37.009	5	2	Median	1397700000	673250000	724400000	162270000	69558000	92713000	254990000	145820000	109170000	566930000	260110000	306820000	413450000	197760000	215690000	59718	5300	56257	364027;364028;364029;364030;364031;364032;364033;364034;364035;364036;364037;364038;364039;364040;364041;364042;364043;364044;364045	491515;491516;491517;491518;491519;491520;491521;491522;491523;491524;491525;491526;491527;491528;491529;491530;491531;491532;491533;491534;491535;491536;491537;491538;491539;491540	491516			26	
YQSNSIQIQWFWR	0	Unmodified	1754.8529	0.85288884	3290	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			86.522	80.82	2	1.0576E-50	45485	160513_QHF_FH_JSI10Kac_6	242.82	220.18			0.88036	1.0561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.88036	1.0561	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	470940000	251590000	219360000	0	0	0	470940000	251590000	219360000	0	0	0	0	0	0	59719	3290	56258	364046	491541;491542	491542			2	
YQTFLQLLYTLQGK	1	Unmodified	1714.9294	0.92940782	659	O95229	ZWINT	ZW10 interactor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	97.302	88.498	2;3	3.7655E-45	50353	160513_QHF_FH_JSI9Kac_6	189.33	166.41			0.85972	0.84384	27.31	7	2	Median	0.77166	0.67253	14.715	2	0	Median	1.1861	1.4062	NaN	1	1	Median	0.93776	0.8815	21.942	2	1	Median	0.85072	0.90943	10.586	2	0	Median	958140000	481020000	477120000	347910000	171430000	176490000	164710000	82786000	81928000	311320000	152790000	158530000	134200000	74015000	60184000	59720	659	56259	364047;364048;364049;364050;364051;364052;364053	491543;491544;491545;491546;491547;491548;491549;491550	491545			8	
YQTLSLK	1	Unmodified	851.47527	0.4752686	5479	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	31.52	30.393	2	0.0089406	25631	160511_QHF_FH_JSI12i_2	81.297	26.772			0.75181	0.90006	36.888	2	0	Median	NaN	NaN	NaN	0	0	Median	0.55869	0.69341	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0117	1.1683	NaN	1	0	Median	245430000	136450000	108980000	0	0	0	110670000	68106000	42566000	0	0	0	134760000	68341000	66416000	59721	5479	56260	364054;364055	491551;491552	491551			2	
YQTNPCIGYK	1	Unmodified	1242.5703	0.57030797	1136	P18084	ITGB5	Integrin beta-5	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	29.787	29.219	2	0.023208	26120	160511_QHF_FH_JSI12i_1	48.796	27.926			1.5849	1.6889	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5849	1.6889	NaN	1	1	Median	22265000	9739000	12526000	0	0	0	0	0	0	0	0	0	22265000	9739000	12526000	59722	1136	56261	364056	491553	491553			1	
YQTPDHWYPSDLQAR	0	Unmodified	1875.854	0.85401105	949	P0CG30;P0CG29	GSTT2B;GSTT2	Glutathione S-transferase theta-2B;Glutathione S-transferase theta-2	yes	no	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		54.789	54.789	3	0.016293	48404	160511_QHF_FH_JSI9i_2	32.815	29.036			1.154	1.0877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.154	1.0877	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	57792000	25595000	32197000	0	0	0	0	0	0	57792000	25595000	32197000	0	0	0	59723	949	56262	364057;364058	491554;491555	491555			1	
YQTQPVTLGEVEQVQSGK	1	Unmodified	1990.0007	0.0007348666	693	O95425	SVIL	Supervillin	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				60.239	59.135	2	0.00031705	52513	160511_QHF_FH_JSI9i_1	68.809	51			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59724	693	56263	364059	491556	491556			1	
YQVEYDAYK	1	Unmodified	1177.5292	0.52915466	1110	P17152	TMEM11	Transmembrane protein 11, mitochondrial	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	37.692	37.259	2	0.00039074	33774	160511_QHF_FH_JSI12i_1	81.594	58.765			1.3928	1.4011	5.8766	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3824	1.344	NaN	1	0	Median	1.4033	1.4605	NaN	1	0	Median	255880000	107180000	148700000	0	0	0	0	0	0	145610000	61422000	84183000	110280000	45762000	64515000	59725	1110	56264	364060;364061	491557;491558;491559	491558			3	
YQVFFFGTHETAFLGPK	1	Unmodified	1987.9832	0.98323431	1758	P51858	HDGF	Hepatoma-derived growth factor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.95	6.66		12	10						15	9	10	8	10	89.17	85.609	2;3	1.5881E-128	41837	160513_QHF_FH_JSI9Kac_6	311.16	298.54			0.99188	0.98221	36.763	29	11	Median	1.143	1.0287	10.001	5	1	Median	0.71526	0.8664	14.766	8	2	Median	1.0409	0.98505	13.1	6	2	Median	0.96352	1.0493	57.941	10	6	Median	63983000000	30871000000	33112000000	10530000000	4204000000	6325600000	26604000000	13989000000	12616000000	9051800000	4681100000	4370700000	17797000000	7997600000	9799800000	59726	1758	56265	364062;364063;364064;364065;364066;364067;364068;364069;364070;364071;364072;364073;364074;364075;364076;364077;364078;364079;364080;364081;364082;364083;364084;364085;364086;364087;364088;364089;364090;364091;364092;364093;364094;364095;364096;364097;364098	491560;491561;491562;491563;491564;491565;491566;491567;491568;491569;491570;491571;491572;491573;491574;491575;491576;491577;491578;491579;491580;491581;491582;491583;491584;491585;491586;491587;491588;491589;491590;491591;491592;491593;491594;491595;491596;491597;491598;491599;491600;491601;491602;491603;491604;491605;491606;491607;491608;491609;491610;491611;491612;491613;491614;491615;491616;491617;491618;491619;491620;491621;491622;491623;491624;491625;491626;491627;491628	491601			68	
YQVFMLHSNMQTSDQK	1	Unmodified	1955.887	0.88696744	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		16	0									3	1	1	1		61.388	52.334	3	4.8085E-24	28783	160513_QHF_FH_JSI10Kac_6	151.48	151.48			0.9287	1.0249	11.161	3	0	Plateau	0.98782	0.84741	NaN	1	0	Median	0.87312	1.0313	NaN	1	0	Median	1.0478	1.0249	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	58401000	30086000	28315000	22703000	11228000	11475000	23362000	12693000	10668000	12336000	6164000	6172000	0	0	0	59727	4750	56266	364099;364100;364101	491629;491630;491631;491632;491633;491634	491634			6	
YQVFMLHSNMQTSDQKK	2	Unmodified	2083.9819	0.98193045	4750	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		9.5	6.5			1						1		1	1		48.588	44.296	3;4	4.1476E-05	24464	160513_QHF_FH_JSI10Kac_6	77.562	54.759			0.5235	0.54345	64.023	2	1	Median	NaN	NaN	NaN	0	0	Median	0.71674	0.85461	NaN	1	0	Median	0.38235	0.34558	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	50900000	35821000	15080000	0	0	0	17430000	9426500	8003200	33471000	26394000	7076500	0	0	0	59728	4750	56267	364102;364103	491635;491636;491637	491637			3	
YQVGVHYELTEEEK	1	Unmodified	1722.8101	0.81008055	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	1	3	3	4	46.508	44.886	2;3	4.7414E-17	39584	160511_QHF_FH_JSI11i_3	131.37	90.78			1.2298	1.3446	29.588	8	3	Median	1.1518	0.99659	NaN	1	0	Median	1.0334	1.2607	10.468	2	1	Median	1.6032	1.5597	22.349	2	1	Median	1.4329	1.4327	43.116	3	1	Median	589560000	244800000	344750000	56202000	30201000	26001000	112170000	66735000	45433000	180580000	70584000	109990000	240610000	77283000	163330000	59729	2517	56268	364104;364105;364106;364107;364108;364109;364110;364111;364112;364113;364114	491638;491639;491640;491641;491642;491643;491644;491645;491646;491647;491648;491649;491650	491639			13	
YQVLLDGLVLQGLYQLLEPR	0	Unmodified	2329.3046	0.30456845	1455	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			101.92	94.47	3	1.2837E-34	56805	160513_QHF_FH_JSI10Kac_6	166.06	154			1.2989	1.3078	15.888	2	0	Median	1.7197	1.4633	NaN	1	0	Median	0.98111	1.1688	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	251100000	117020000	134080000	93543000	31042000	62501000	157550000	85974000	71580000	0	0	0	0	0	0	59730	1455	56269	364115;364116	491651;491652	491652			2	
YQVSWSLDHK	1	Unmodified	1261.6091	0.60913632	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.88	6.64		8	7						10	5	7	7	6	50.242	45.84	2;3	1.7136E-25	38756	160511_QHF_FH_JSI12i_3	188.04	181.74			1.0758	1.0253	26.787	24	10	Median	1.1543	0.94886	32.173	5	3	Median	0.91368	1.0787	20.123	6	3	Median	1.1131	1.0223	27.312	7	3	Median	1.0071	1.0593	32.434	6	1	Median	5214500000	2792300000	2422200000	455210000	205350000	249850000	1049200000	497740000	551470000	1772900000	1012300000	760640000	1937100000	1076900000	860230000	59731	1740	56270	364117;364118;364119;364120;364121;364122;364123;364124;364125;364126;364127;364128;364129;364130;364131;364132;364133;364134;364135;364136;364137;364138;364139;364140;364141	491653;491654;491655;491656;491657;491658;491659;491660;491661;491662;491663;491664;491665;491666;491667;491668;491669;491670;491671;491672;491673;491674;491675;491676;491677;491678;491679;491680;491681;491682;491683;491684;491685;491686;491687;491688;491689;491690;491691;491692	491682			39	
YQVSWSLDHKSAHAGTYEVR	1	Acetyl (K)	2375.1295	0.12945763	1740	P51571	SSR4	Translocon-associated protein subunit delta	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		65.529	55.863	3	0.00028159	30245	160513_QHF_FH_JSI11Kac_6	80.752	72.108			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6075500	6075500	0	0	0	0	0	0	0	6075500	6075500	0	0	0	0	59732	1740	56271	364142	491693;491694	491693	1753		2	
YQWGIMK	1	Unmodified	924.45276	0.45275902	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	51.189	50.275	2	0.0097624	41201	160511_QHF_FH_JSI9i_3	77.748	56.594			0.93575	0.94032	16.884	8	0	Median	1.3108	1.1178	28.106	2	0	Median	0.85204	1.0214	13.326	2	0	Median	0.88962	0.88102	2.1947	2	0	Median	0.98931	1.0855	18.682	2	0	Median	1918300000	923410000	994920000	226420000	93469000	132950000	359960000	208040000	151920000	629340000	279270000	350080000	702600000	342630000	359970000	59733	5215	56272	364143;364144;364145;364146;364147;364148;364149;364150	491695;491696;491697;491698;491699;491700;491701;491702;491703;491704;491705;491706;491707;491708;491709;491710	491702			16	
YQWGIMK	1	Oxidation (M)	940.44767	0.44767364	5215	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	yes	yes	0	0	1	0	By matching	By MS/MS	By matching	By MS/MS	3	0			4							1	1	1	1	38.546	37.76	2	0.052195	32090	160511_QHF_FH_JSI12i_3	50.025	25.026			1.2006	1.0703	13.883	4	0	Linear	1.8655	1.5305	NaN	1	0	Median	1.157	1.3203	NaN	1	0	Median	1.2458	1.1695	NaN	1	0	Median	1.117	1.1245	NaN	1	0	Median	176920000	73201000	103720000	21479000	6715000	14764000	28661000	11054000	17607000	45666000	21627000	24039000	81111000	33805000	47306000	59734	5215	56272	364151;364152;364153;364154	491711	491711			1	
YQYAELGK	1	Unmodified	970.476	0.47599688	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0		By MS/MS	By MS/MS		2	0		2									1	1		29.06	28.411	2	0.0052486	24924	160511_QHF_FH_JSI10i_2	74.127	47.525			0.84561	0.93958	5.4883	2	2	Median	NaN	NaN	NaN	0	0	Median	0.78556	0.97676	NaN	1	1	Median	0.91025	0.90381	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75129000	39166000	35963000	0	0	0	30362000	15143000	15220000	44767000	24024000	20743000	0	0	0	59735	3921	56273	364155;364156	491712;491713	491713			2	
YRCELLYEGPPDDEAAMGIK	1	Oxidation (M)	2342.0559	0.055883259	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	1	1		By MS/MS	By MS/MS	By MS/MS	2.57	0.495		3	4								3	3	1	60.729	60.228	3	5.4535E-08	53236	160511_QHF_FH_JSI11i_3	102.98	98.54			0.93114	1.0754	23.024	5	1	Median	NaN	NaN	NaN	0	0	Median	1.0586	1.3064	27.518	2	0	Median	0.93	0.91011	2.6554	2	1	Median	1.2024	1.1797	NaN	1	0	Median	705320000	338640000	366680000	0	0	0	212360000	103690000	108670000	364060000	184090000	179980000	128890000	50864000	78027000	59736	1033	56274	364157;364158;364159;364160;364161;364162;364163	491714;491715;491716;491717;491718;491719;491720;491721;491722;491723;491724;491725;491726	491714		628	13	
YRCELLYEGPPDDEAAMGIK	1	Unmodified	2326.061	0.060968637	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.27	0.68	2	7	6							2	4	5	4	69.722	69.112	2;3	1.0632E-18	59734	160511_QHF_FH_JSI12i_3	159.04	155.81			0.8829	0.95926	33.012	14	3	Median	0.89992	0.78808	38.501	2	1	Median	1.1146	1.3185	26.406	4	0	Median	0.77315	0.77166	12.293	5	1	Median	0.89844	0.92308	15.761	3	1	Plateau	3731800000	1941400000	1790400000	300540000	155950000	144590000	681470000	329110000	352360000	1818700000	974700000	844010000	931090000	481600000	449490000	59737	1033	56274	364164;364165;364166;364167;364168;364169;364170;364171;364172;364173;364174;364175;364176;364177;364178	491727;491728;491729;491730;491731;491732;491733;491734;491735;491736;491737;491738;491739;491740;491741;491742;491743;491744;491745;491746;491747;491748;491749;491750;491751;491752;491753;491754;491755;491756;491757;491758;491759;491760;491761;491762;491763;491764;491765;491766;491767;491768;491769;491770;491771;491772;491773;491774;491775;491776;491777;491778	491772			52	
YRDPTTVTTLR	0	Unmodified	1321.699	0.69901396	2052	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			29.272	27.947	3	0.01971	23193	160511_QHF_FH_JSI10i_3	25.141	19.322			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59738	2052	56275	364179	491779	491779			1	
YRDQIPSPGLMVFPK	1	Unmodified	1746.9127	0.9127119	1829	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.8	0.4		1	4							3	2			75.25	73.938	2;3	2.7301E-05	60747	160511_QHF_FH_JSI9i_3	97.836	87.46			0.8785	0.87207	8.5729	5	0	Median	1.0454	0.87088	8.5749	3	0	Median	0.79429	0.92523	1.85	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	508750000	251740000	257010000	284930000	136730000	148200000	223820000	115010000	108810000	0	0	0	0	0	0	59739	1829	56276	364180;364181;364182;364183;364184	491780;491781;491782;491783;491784;491785;491786;491787	491783			8	
YRDTVLLPQTSFPMK	1	Unmodified	1794.9338	0.93384128	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.75	0.433		1	3							2	1	1		70.287	69.332	3	0.00013871	61751	160511_QHF_FH_JSI11i_3	78.69	61.201			1.0595	0.90862	18.093	4	0	Median	1.2964	1.0602	23.343	2	0	Median	0.73574	0.82745	NaN	1	0	Median	0.99705	0.91849	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	515580000	252960000	262610000	223940000	107740000	116210000	141690000	77106000	64587000	149940000	68120000	81818000	0	0	0	59740	4983	56277	364185;364186;364187;364188	491788;491789;491790;491791;491792;491793;491794	491789			7	
YRDTVLLPQTSFPMK	1	Oxidation (M)	1810.9288	0.9287559	4983	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	yes	yes	0	0	1	1	By MS/MS	By MS/MS			3	0			3							2	1			61.312	59.794	3	0.01756	49217	160511_QHF_FH_JSI9i_3	48.823	42.66			0.89901	1.0302	34.526	3	2	Median	1.1867	0.95769	48.462	2	2	Median	0.89901	1.0302	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	108380000	49692000	58688000	61108000	22002000	39106000	47272000	27690000	19582000	0	0	0	0	0	0	59741	4983	56277	364189;364190;364191	491795;491796;491797	491796		2567	3	
YRDVAECGPQQELDLNSPR	0	Unmodified	2246.0386	0.038593711	4416	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			47.86	46.897	3	0.012873	41334	160511_QHF_FH_JSI10i_2	38.878	33.063			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59742	4416	56278	364192	491798	491798			1	
YREAIIK	1	Unmodified	891.5178	0.51780212	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		27.885	26.963	3	0.010815	22653	160511_QHF_FH_JSI11i_3	45.718	2.4716			2.6099	3.1087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.6099	3.1087	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18041000	7130200	10910000	0	0	0	18041000	7130200	10910000	0	0	0	0	0	0	59743	4880	56279	364193;364194	491799;491800	491799			2	
YREANGLPIMESNCFDPSK	1	Unmodified	2227.0038	0.003788109	5086	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.5	0.5		1	1								1	1		63.896	63.475	3	0.00013624	56185	160511_QHF_FH_JSI11i_3	77.391	67.603			0.93719	1.0096	42.238	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1124	1.361	NaN	1	1	Median	0.7896	0.74891	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	54930000	30278000	24652000	0	0	0	18807000	6118500	12689000	36122000	24160000	11963000	0	0	0	59744	5086	56280	364195;364196	491801;491802	491801			2	
YRELLAK	1	Unmodified	891.5178	0.51780212	1181	P20810	CAST	Calpastatin	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			3							2	1			17.789	16.712	3	0.0029842	13486	160511_QHF_FH_JSI9i_3	74.127	29.68			22.541	25.353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	22.541	25.353	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	141720000	8655400	133060000	0	0	0	141720000	8655400	133060000	0	0	0	0	0	0	59745	1181	56281	364197;364198;364199	491803;491804;491805	491805			3	
YREMMIVMR	0	Unmodified	1227.5926	0.59264009	3896	Q92878	RAD50	DNA repair protein RAD50	yes	yes	0	0	0	1		By MS/MS			16	0									1		1			51.92	43.321	3	0.023939	23908	160513_QHF_FH_JSI10Kac_6	49.35	45.196			1.2479	1.4347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2479	1.4347	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13418000	5919900	7498100	0	0	0	13418000	5919900	7498100	0	0	0	0	0	0	59746	3896	56282	364200	491806	491806			0	
YREVQLPDR	0	Unmodified	1174.6095	0.60947067	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			25.552	24.245	3	0.0020992	19636	160511_QHF_FH_JSI9i_3	49.35	38.186			1.1065	1.0694	19.891	2	0	Median	1.5159	1.2309	NaN	1	0	Median	0.80768	0.92906	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	124120000	59806000	64315000	77954000	36558000	41396000	46167000	23249000	22919000	0	0	0	0	0	0	59747	1060	56283	364201;364202	491807;491808	491808			2	
YREWHHFLVVNMK	1	Unmodified	1757.8824	0.88241483	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									9	1	6		2	74.767	66.865	4	0.00010743	36966	160513_QHF_FH_JSI10Kac_6	84.506	74.309			0.83477	0.91891	26.512	9	1	Median	1.0407	0.90052	NaN	1	0	Median	0.76891	0.91194	29.858	6	0	Median	NaN	NaN	NaN	0	0	Median	1.0132	1.0861	23.636	2	1	Median	350540000	178160000	172380000	34486000	17064000	17422000	291530000	150330000	141200000	0	0	0	24523000	10760000	13763000	59748	1343	56284	364203;364204;364205;364206;364207;364208;364209;364210;364211	491809;491810;491811;491812;491813;491814;491815;491816;491817;491818	491816			8	
YRGDVYLVGATNAGK	1	Unmodified	1582.8104	0.81035532	3612	Q8NC60	NOA1	Nitric oxide-associated protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				41.24	39.704	3	0.018461	32450	160511_QHF_FH_JSI9i_3	43.557	30.79			0.65287	0.53088	NaN	1	1	Median	0.65287	0.53088	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26895000	10965000	15930000	26895000	10965000	15930000	0	0	0	0	0	0	0	0	0	59749	3612	56285	364212	491819	491819			1	
YRGMGSLDAMDK	1	Unmodified	1342.601	0.60095617	1015	P12268	IMPDH2	Inosine-5'-monophosphate dehydrogenase 2	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.613	35.155	3	0.043129	29309	160511_QHF_FH_JSI10i_3	33.317	30.955			0.53118	0.62407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.53118	0.62407	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	44732000	30478000	14253000	0	0	0	44732000	30478000	14253000	0	0	0	0	0	0	59750	1015	56286	364213	491820	491820			1	
YRGSIHDFPGFDPNQDAEALYTAMK	1	Unmodified	2842.3021	0.30207862	891	P08133	ANXA6	Annexin A6	yes	yes	0	0	0	1		By MS/MS	By MS/MS		3	0			4								1	3		94.537	94.323	3;4	4.2109E-09	81727	160511_QHF_FH_JSI11i_3	75.326	68.295			1.4331	1.5174	33.752	2	1	Median	NaN	NaN	NaN	0	0	Median	1.6213	1.9264	NaN	1	1	Median	1.2668	1.1952	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	63956000	25767000	38189000	0	0	0	3964900	1313600	2651400	59991000	24454000	35537000	0	0	0	59751	891	56287	364214;364215;364216;364217	491821;491822;491823;491824	491821			4	
YRLEALK	1	Unmodified	891.5178	0.51780212	4831	Q9HAV4	XPO5	Exportin-5	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.83	0.373		1	5							3	1	1	1	27.647	26.792	3	0.0042344	22790	160511_QHF_FH_JSI11i_3	72.485	28.038			1.1136	1.073	90.053	6	3	Median	1.1855	0.96101	138.54	3	2	Median	1.0064	1.1646	NaN	1	0	Median	1.0461	0.98867	NaN	1	1	Median	1.6671	1.6694	NaN	1	0	Median	756130000	335020000	421110000	311090000	111940000	199150000	180890000	94729000	86164000	211120000	103880000	107230000	53036000	24474000	28561000	59752	4831	56288	364218;364219;364220;364221;364222;364223	491825;491826;491827;491828;491829;491830;491831	491825			7	
YRPEFLK	1	Unmodified	951.5178	0.51780212	5303	Q9UHJ6	SHPK	Sedoheptulokinase	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			36.08	34.64	3	0.023275	28908	160511_QHF_FH_JSI10i_3	36.395	10.658			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59753	5303	56289	364224	491832	491832			1	
YRPENTPEPVSTSVSHYGAEPTTVSPCPSSSAK	1	Unmodified	3518.626	0.62599153	884	P07947	YES1	Tyrosine-protein kinase Yes	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			50.51	48.943	4	0.05311	40832	160511_QHF_FH_JSI10i_3	13.742	11.907			0.70723	0.8388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.70723	0.8388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19134000	14560000	4574100	0	0	0	19134000	14560000	4574100	0	0	0	0	0	0	59754	884	56290	364225	491833	491833			1	
YRPLFDYFLK	1	Unmodified	1360.718	0.71795849	1520	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.32			8						5	4	5	3	1	84.736	80.059	2;3	3.5413E-11	75969	160511_QHF_FH_JSI11i_3	137.89	126.68			0.76463	0.84939	25.736	9	1	Median	0.98404	0.83693	43.187	3	1	Median	0.73801	0.85496	3.6508	3	0	Median	0.9249	0.8598	9.3271	2	0	Median	0.76198	0.81525	NaN	1	0	Median	3273600000	1862700000	1411000000	732490000	347630000	384860000	2029700000	1226900000	802780000	348680000	179940000	168740000	162750000	108160000	54591000	59755	1520	56291	364226;364227;364228;364229;364230;364231;364232;364233;364234;364235;364236;364237;364238	491834;491835;491836;491837;491838;491839;491840;491841;491842;491843;491844;491845;491846;491847;491848;491849;491850;491851;491852;491853;491854;491855;491856;491857;491858;491859	491836			26	
YRPLGSEDPEPK	1	Unmodified	1386.6779	0.67794416	2390	Q13332	PTPRS	Receptor-type tyrosine-protein phosphatase S	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			23.772	22.516	3	0.030887	18507	160511_QHF_FH_JSI10i_3	31.801	24.076			0.87342	1.0108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87342	1.0108	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	24322000	12073000	12249000	0	0	0	24322000	12073000	12249000	0	0	0	0	0	0	59756	2390	56292	364239	491860;491861	491861			2	
YRQDDDQR	0	Unmodified	1094.4741	0.4740994	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2	0		4								2	2			1.7767	1.4206	2;3	0.0070021	769	160511_QHF_FH_JSI10i_2	49.423	37.376			0.9862	1.0233	22.7	4	0	Median	1.4386	1.2282	9.4981	2	0	Median	0.69537	0.84978	9.959	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	70169000	36533000	33636000	20409000	9276400	11133000	49759000	27257000	22503000	0	0	0	0	0	0	59757	3213	56293	364240;364241;364242;364243	491862;491863;491864;491865	491864			4	
YRQENQEAVGGFFSQIGELYVVHHLWAYK	1	Unmodified	3467.7051	0.70510897	4336	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS			16	0									3	1	2			91.698	84.931	4;5	4.8954E-85	48793	160513_QHF_FH_JSI10Kac_6	214.78	208.99			0.73573	0.78483	7.2329	3	1	Median	0.90758	0.78483	NaN	1	1	Median	0.69461	0.82309	9.4618	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	851320000	500910000	350410000	63612000	40595000	23018000	787700000	460310000	327390000	0	0	0	0	0	0	59758	4336	56294	364244;364245;364246	491866;491867;491868;491869	491868			4	
YRQQFEELYK	1	Unmodified	1402.6881	0.68811492	2925	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		37.003	37.003	3	0.020636	32491	160511_QHF_FH_JSI11i_3	40.533	33.494			0.72499	0.68915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.72499	0.68915	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	42763000	23684000	19079000	0	0	0	0	0	0	42763000	23684000	19079000	0	0	0	59759	2925	56295	364247	491870	491870			1	
YRQTTQDAPEEVR	0	Unmodified	1591.759	0.75904803	5172	Q9P013	CWC15	Spliceosome-associated protein CWC15 homolog	yes	yes	0	0	0	1	By MS/MS	By MS/MS			2.67	0.471		1	2							2	1			14.915	14.067	3	0.0008225	11187	160511_QHF_FH_JSI10i_3	59.248	55.146			0.89028	1.131	43.462	3	1	Plateau	1.3288	1.1075	54.652	2	1	Median	0.67942	0.78475	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	102110000	44614000	57499000	69622000	30001000	39622000	32491000	14613000	17878000	0	0	0	0	0	0	59760	5172	56296	364248;364249;364250	491871;491872;491873	491871			3	
YRSEALPTDLPAPSAPDLTEPK	1	Unmodified	2367.1958	0.19580586	1050	P14314	PRKCSH	Glucosidase 2 subunit beta	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.18	3.81	3	4	3					1		1	3	4	3	71.276	69.716	3	4.1635E-10	62685	160511_QHF_FH_JSI11i_3	109.44	99.325			0.9193	0.94712	13.845	11	1	Median	1.0963	0.93731	NaN	1	0	Median	0.78951	0.96041	27.536	3	1	Median	0.95749	0.96314	8.186	4	0	Median	0.88479	0.93437	7.2377	3	0	Median	1739800000	879740000	860020000	194210000	83637000	110570000	361290000	194270000	167020000	743000000	383680000	359310000	441270000	218150000	223120000	59761	1050	56297	364251;364252;364253;364254;364255;364256;364257;364258;364259;364260;364261	491874;491875;491876;491877;491878;491879;491880;491881;491882;491883;491884;491885;491886;491887;491888;491889;491890;491891;491892;491893;491894	491876			21	
YRVPDVLVADPPIAR	0	Unmodified	1679.9359	0.93589019	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.64	0.481		4	7							3	4	3	1	70.967	70.129	2;3	5.6229E-05	58716	160511_QHF_FH_JSI10i_3	89.506	83.208			0.87012	0.89032	7.8494	11	0	Median	1.2568	1.0086	10.218	3	0	Median	0.74655	0.88015	2.0737	4	0	Median	0.91626	0.93021	10.173	3	0	Plateau	0.87012	0.8905	NaN	1	0	Median	2460300000	1303300000	1157000000	1103200000	512300000	590890000	916190000	558000000	358190000	373790000	194270000	179520000	67153000	38713000	28441000	59762	2569	56298	364262;364263;364264;364265;364266;364267;364268;364269;364270;364271;364272	491895;491896;491897;491898;491899;491900;491901;491902;491903;491904;491905;491906;491907;491908;491909;491910;491911	491898			17	
YRWTEYGLTFTEK	1	Unmodified	1692.8148	0.814772	1195	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	7.33	6.13			6						3	3	3	2	1	71.024	67.547	2;3	5.4539E-05	57530	160511_QHF_FH_JSI10i_3	85.837	81.036			1.0451	1.1942	50.199	9	2	Median	1.8547	1.5834	39.591	3	1	Plateau	0.95184	1.0934	10.769	3	0	Plateau	1.0895	1.0235	47.903	2	1	Median	3.7813	3.9597	NaN	1	0	Median	784030000	335210000	448810000	194420000	66251000	128170000	356600000	177590000	179010000	182730000	77517000	105220000	50270000	13857000	36413000	59763	1195	56299	364273;364274;364275;364276;364277;364278;364279;364280;364281	491912;491913;491914;491915;491916;491917;491918;491919;491920;491921	491915			10	
YSAEMPQLPQDLK	1	Unmodified	1518.7388	0.73882986	940	P09884	POLA1	DNA polymerase alpha catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	3										2	1		65.755	65.423	2	0.0078904	59526	160511_QHF_FH_JSI11i_1	49.081	31.86			0.86904	1.027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.86904	1.027	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	93947000	45846000	48102000	0	0	0	93947000	45846000	48102000	0	0	0	0	0	0	59764	940	56300	364282;364283;364284	491922;491923;491924	491922			3	
YSAFQLAPFQDHGLPAVSVDSPVR	0	Unmodified	2600.3023	0.30233662	3877	Q92738	USP6NL	USP6 N-terminal-like protein	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	94.924	94.931	3	0.0020418	82293	160511_QHF_FH_JSI12i_3	36.504	28.607			1.7453	1.8055	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.7453	1.8055	NaN	1	1	Median	24122000	6985200	17137000	0	0	0	0	0	0	0	0	0	24122000	6985200	17137000	59765	3877	56301	364285	491925	491925			1	
YSAGCIYYYPSFHYTHNPSQAEK	1	Unmodified	2782.2122	0.21220098	701	O95487	SEC24B	Protein transport protein Sec24B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	1	2	1	1	65.735	56.804	3;4	2.3682E-17	31119	160513_QHF_FH_JSI10Kac_6	122.3	119.69			1.1096	1.1462	11.218	5	2	Median	1.5639	1.3277	NaN	1	1	Median	0.89572	1.0607	10.967	2	1	Median	1.1425	1.084	NaN	1	0	Median	1.1096	1.1941	NaN	1	0	Median	119900000	59668000	60232000	7299300	2247800	5051500	71451000	37967000	33484000	18023000	8206600	9816200	23127000	11246000	11880000	59766	701	56302	364286;364287;364288;364289;364290	491926;491927;491928;491929;491930;491931;491932	491931			7	
YSAKDYFFK	2	Acetyl (K)	1209.5706	0.57062555	1838;4649	P54920;Q9H115	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	no	no	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		75.574	64.999	2	0.025645	34610	160513_QHF_FH_JSI11Kac_5	49.418	40.061			0.59482	0.64113	87.102	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0091	1.1869	NaN	1	0	Median	0.3506	0.34631	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	8179700	5663600	2516100	0	0	0	2300200	1309600	990550	5879500	4354000	1525500	0	0	0	59767	1838;4649	56303	364291;364292	491933	491933	1848		1	
YSALFLGVAYGATR	0	Unmodified	1487.7773	0.77726428	1879	P56385	ATP5I	ATP synthase subunit e, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.4	6.05		3	3	2					12	4	7	5	4	82.515	75.972	2;3	1.5648E-16	41668	160513_QHF_FH_JSI10Kac_6	166.04	154.31			0.93515	0.90181	28.796	17	9	Median	1.2886	1.1042	28.989	4	2	Median	0.78248	0.9237	37.374	6	3	Median	0.92838	0.88406	18.131	4	3	Median	0.84936	0.89149	26.855	3	1	Plateau	2673000000	1248500000	1424600000	786000000	304850000	481150000	1081100000	549370000	531760000	500430000	252710000	247720000	305480000	141530000	163950000	59768	1879	56304	364293;364294;364295;364296;364297;364298;364299;364300;364301;364302;364303;364304;364305;364306;364307;364308;364309;364310;364311;364312	491934;491935;491936;491937;491938;491939;491940;491941;491942;491943;491944;491945;491946;491947;491948;491949;491950;491951;491952;491953;491954	491952			21	
YSALHAK	1	Unmodified	788.41809	0.41808807	690	O95394	PGM3	Phosphoacetylglucosamine mutase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	7.2011	6.9571	2	0.049808	4839	160511_QHF_FH_JSI9i_3	42.914	26.359			1.2506	1.3033	20.556	4	0	Median	2.1012	1.7724	NaN	1	0	Median	1.08	1.2387	NaN	1	0	Median	1.1378	1.0918	NaN	1	0	Median	1.3745	1.3713	NaN	1	0	Median	478550000	221060000	257500000	34429000	10386000	24043000	49723000	26701000	23022000	168290000	66228000	102060000	226120000	117740000	108370000	59769	690	56305	364313;364314;364315;364316	491955	491955			1	
YSALNVQHQMLK	1	Unmodified	1430.734	0.73401926	138	O00461	GOLIM4	Golgi integral membrane protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.73	3.91		5	5						1	1	2	5	3	40.856	39.41	2;3	7.1991E-08	34717	160511_QHF_FH_JSI10i_2	105.03	94.126			1.1715	1.0294	28.208	11	3	Median	1.1715	0.99257	NaN	1	0	Median	0.77481	0.91475	16.694	2	0	Median	1.2656	1.2543	31.68	5	2	Median	1.2287	1.2538	34.085	3	1	Median	884930000	482360000	402560000	71201000	33826000	37374000	132420000	85168000	47253000	357300000	202500000	154810000	324000000	160870000	163130000	59770	138	56306	364317;364318;364319;364320;364321;364322;364323;364324;364325;364326;364327	491956;491957;491958;491959;491960;491961;491962;491963;491964;491965;491966	491963			9	
YSAPVIHVLDASK	1	Unmodified	1398.7507	0.75071518	4303	Q99707	MTR	Methionine synthase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	54.626	54.505	3	7.4343E-05	48365	160511_QHF_FH_JSI11i_3	72.891	62.566			1.3016	1.2801	4.9229	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2912	1.2363	NaN	1	0	Median	1.3121	1.3255	NaN	1	0	Median	111390000	52094000	59294000	0	0	0	0	0	0	55490000	29732000	25759000	55898000	22362000	33535000	59771	4303	56307	364328;364329	491967;491968	491967			2	
YSAQGER	0	Unmodified	809.36678	0.36678078	323	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3									2	2	2	4.9458	4.6371	2	0.023698	2432	160511_QHF_FH_JSI12i_2	55.441	32.819			0.84566	0.89228	20.009	6	1	Median	NaN	NaN	NaN	0	0	Median	0.93344	1.0976	22.381	2	0	Median	0.84566	0.84541	0.72723	2	0	Median	0.80977	0.87958	26.623	2	1	Median	1307000000	722800000	584170000	0	0	0	435600000	243200000	192400000	474990000	268880000	206110000	396380000	210720000	185660000	59772	323	56308	364330;364331;364332;364333;364334;364335	491969;491970;491971;491972;491973;491974	491971			6	
YSASKPLK	2	Acetyl (K)	934.51238	0.51238239	1234	P23526	AHCY	Adenosylhomocysteinase	yes	yes	1	0	0	1			By MS/MS		14	0							1					1		31.266	22.144	2	0.005903	14103	160513_QHF_FH_JSI11Kac_4	84.498	47.797			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	19261000	19261000	0	0	0	0	0	0	0	19261000	19261000	0	0	0	0	59773	1234	56309	364336	491975	491975	1113		1	
YSAVDTNPLSLYVMHPFWNTIVK	1	Unmodified	2694.3516	0.35159499	4585	Q9C0D9	EPT1	Ethanolaminephosphotransferase 1	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		96.361	86.961	3	1.012E-48	49354	160513_QHF_FH_JSI11Kac_6	185.45	159.44			1.0333	0.97345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0333	0.97345	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	214240000	96954000	117280000	0	0	0	0	0	0	214240000	96954000	117280000	0	0	0	59774	4585	56310	364337	491976	491976			1	
YSCFALFVK	1	Unmodified	1133.558	0.55795237	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			77.276	71.21	2	5.7028E-05	38879	160513_QHF_FH_JSI10Kac_6	103.83	81.596			1.1362	1.3472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1362	1.3472	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	337130000	163510000	173620000	0	0	0	337130000	163510000	173620000	0	0	0	0	0	0	59775	2094	56311	364338	491977	491977			1	
YSDADIEPFLK	1	Unmodified	1296.6238	0.62378333	2485	Q14008	CKAP5	Cytoskeleton-associated protein 5	yes	yes	0	0	0	0		By MS/MS	By matching		1	0	2										1	1		68.019	67.661	2	0.018712	61331	160511_QHF_FH_JSI10i_1	42.161	34.118			1.2587	1.3309	38.611	2	0	Median	NaN	NaN	NaN	0	0	Median	1.5	1.7488	NaN	1	0	Median	1.0563	1.013	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	75990000	31295000	44696000	0	0	0	40299000	15490000	24808000	35692000	15804000	19888000	0	0	0	59776	2485	56312	364339;364340	491978	491978			1	
YSDDTPLPTPSYK	1	Unmodified	1482.6878	0.68784015	3861	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	50.13	49.465	2	0.0058014	44832	160511_QHF_FH_JSI12i_1	61.435	44.764			0.67685	0.70135	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.67685	0.70135	NaN	1	1	Median	48141000	29863000	18278000	0	0	0	0	0	0	0	0	0	48141000	29863000	18278000	59777	3861	56313	364341	491979	491979			1	
YSDFEWLR	0	Unmodified	1114.5084	0.50835964	419	O60493	SNX3	Sorting nexin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	68.137	67.24	2	0.00091687	59753	160511_QHF_FH_JSI10i_2	96.492	88.801			1.0388	1.0677	10.743	4	0	Median	1.3252	1.1067	NaN	1	0	Median	0.75684	0.93807	NaN	1	0	Median	1.196	1.2083	NaN	1	0	Median	0.90223	1.03	NaN	1	0	Median	488170000	239400000	248770000	69278000	29403000	39875000	111520000	63029000	48489000	170870000	72816000	98057000	136500000	74150000	62354000	59778	419	56314	364342;364343;364344;364345	491980;491981;491982;491983	491983			4	
YSDIDIILLK	1	Unmodified	1191.6751	0.67509062	3914	Q92973	TNPO1	Transportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							2	1	1	1	86.825	86.056	2	4.6871E-05	75646	160511_QHF_FH_JSI11i_2	105.4	92.019			0.91828	0.92501	3.9805	5	0	Median	1.0238	0.88103	1.0462	2	0	Median	0.78178	0.95658	NaN	1	0	Median	0.91828	0.92501	NaN	1	0	Median	0.84242	0.9489	NaN	1	0	Median	215450000	109230000	106220000	42250000	18390000	23860000	35042000	17768000	17274000	69328000	35876000	33452000	68833000	37196000	31637000	59779	3914	56315	364346;364347;364348;364349;364350	491984;491985;491986;491987;491988;491989;491990;491991;491992	491990			9	
YSDIEPSTEGEVIFR	0	Unmodified	1740.8206	0.82064524	883	P07942	LAMB1	Laminin subunit beta-1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	65.88	65.402	2	0.014032	59224	160511_QHF_FH_JSI10i_1	53.569	37.679			0.69858	0.76252	9.6878	2	2	Median	NaN	NaN	NaN	0	0	Median	0.7185	0.81659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.67921	0.71204	NaN	1	1	Median	41993000	24673000	17320000	0	0	0	20987000	11522000	9465400	0	0	0	21006000	13151000	7854900	59780	883	56316	364351;364352	491993;491994	491994			2	
YSDLTTLVAFPSSSVYPTK	1	Unmodified	2075.0463	0.046288076	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								3	3	3	3	94.443	94.081	2;3	6.0652E-11	85461	160511_QHF_FH_JSI12i_1	175.15	152.92			0.85168	0.83509	10.359	12	2	Median	1.1245	0.91697	9.0963	3	0	Median	0.63328	0.7434	11.854	3	2	Plateau	0.83259	0.81502	5.9389	3	0	Median	0.88205	0.91935	12.625	3	0	Median	568990000	306500000	262490000	92130000	40098000	52032000	138990000	75081000	63906000	204220000	119070000	85144000	133660000	72248000	61411000	59781	1254	56317	364353;364354;364355;364356;364357;364358;364359;364360;364361;364362;364363;364364	491995;491996;491997;491998;491999;492000;492001;492002;492003;492004;492005;492006;492007;492008;492009;492010;492011	492003			17	
YSDSLVQK	1	Unmodified	938.47091	0.4709115	1778	P52701	MSH6	DNA mismatch repair protein Msh6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	19.947	19.441	2	0.00821	16857	160511_QHF_FH_JSI12i_1	57.177	35.046			1.0716	1.0742	10.49	4	0	Median	1.3785	1.1329	NaN	1	0	Median	0.87489	1.0185	NaN	1	0	Median	0.97322	0.96316	NaN	1	0	Median	1.18	1.2167	NaN	1	0	Median	425700000	179230000	246470000	109620000	37492000	72125000	69068000	21701000	47367000	112380000	58107000	54270000	134640000	61932000	72704000	59782	1778	56318	364365;364366;364367;364368	492012;492013;492014;492015	492013			4	
YSEEGVYNVQYSFIK	1	Unmodified	1824.857	0.85703074	5002	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	yes	yes	0	0	0	0	By matching	By matching	By MS/MS		2	0		3								1	1	1		73.383	72.649	2	2.937E-05	63662	160511_QHF_FH_JSI11i_2	122.42	109.85			0.82011	1.0444	16.689	3	0	Plateau	1.2151	1.0444	NaN	1	0	Median	0.91468	1.1099	NaN	1	0	Median	0.82011	0.81029	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	97944000	56006000	41938000	24654000	12789000	11866000	25218000	15014000	10204000	48072000	28203000	19869000	0	0	0	59783	5002	56319	364369;364370;364371	492016	492016			1	
YSEFTSTTSGTGHNQTR	0	Unmodified	1872.8238	0.82383313	1637	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.8	4.09		5	4						1	2	2	4	2	16.527	15.317	2;3	3.9189E-12	12637	160511_QHF_FH_JSI11i_3	148.52	140.18			0.91539	0.88218	23.886	9	1	Median	1.2655	1.0678	NaN	1	0	Median	1.0552	1.2869	16.753	2	1	Median	0.90414	0.87523	13.162	4	0	Median	0.72888	0.74251	22.697	2	0	Median	457330000	237900000	219430000	72797000	29468000	43329000	83667000	40412000	43255000	181660000	100280000	81377000	119200000	67738000	51466000	59784	1637	56320	364372;364373;364374;364375;364376;364377;364378;364379;364380;364381	492017;492018;492019;492020;492021;492022;492023;492024;492025;492026;492027;492028;492029;492030;492031	492018			15	
YSEGEIR	0	Unmodified	852.39775	0.39774656	5663	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	12.301	11.565	2	0.023935	9006	160511_QHF_FH_JSI12i_2	49.358	23.25			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59785	5663	56321	364382	492032	492032			1	
YSEGYPGK	1	Unmodified	899.4025	0.40249759	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.91	4.79	4	4	1				2			3	3	3	2	14.574	12.404	2	0.0020172	10650	160511_QHF_FH_JSI10i_2	91.041	60.323			0.98243	1.0353	25.817	10	2	Median	0.96466	0.78138	49.38	2	1	Median	1.0086	1.1743	5.0088	3	0	Median	1.0019	0.9675	11.595	3	0	Median	0.75439	0.80992	19.586	2	1	Median	4567200000	2365100000	2202100000	989270000	542530000	446740000	1156100000	640350000	515710000	1280400000	606970000	673470000	1141500000	575290000	566180000	59786	1415	56322	364383;364384;364385;364386;364387;364388;364389;364390;364391;364392;364393	492033;492034;492035;492036;492037;492038;492039;492040;492041;492042;492043;492044;492045;492046;492047;492048;492049;492050	492050			18	
YSEGYPGKR	1	Acetyl (K)	1097.5142	0.5141733	1415	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	26.811	18.965	2	0.038948	11652	160513_QHF_FH_JSI12Kac_4	59.245	44.579			2.0812	2.2371	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0812	2.2371	NaN	1	1	Median	6078500	3650500	2428000	0	0	0	0	0	0	0	0	0	6078500	3650500	2428000	59787	1415	56323	364394	492051	492051			1	
YSELTTVQQQLIR	0	Unmodified	1577.8413	0.8413211	344	O43592	XPOT	Exportin-T	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.79	2	4						2		2	1	3	2	67.061	63.815	2	1.11E-40	55689	160511_QHF_FH_JSI11i_2	198.25	167.45			0.92392	0.89845	20.474	8	2	Median	0.961	0.80142	9.8759	2	0	Median	0.7081	0.86985	NaN	1	0	Median	0.97396	0.97479	27.864	3	1	Median	0.86649	0.92671	3.8066	2	1	Median	488550000	256620000	231930000	83342000	47604000	35738000	77078000	46927000	30151000	204950000	102430000	102520000	123180000	59655000	63526000	59788	344	56324	364395;364396;364397;364398;364399;364400;364401;364402	492052;492053;492054;492055;492056;492057;492058;492059;492060;492061;492062;492063;492064	492061			13	
YSEQMTYGISSEK	1	Unmodified	1521.6657	0.6657245	246	O15111	CHUK	Inhibitor of nuclear factor kappa-B kinase subunit alpha	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		38.41	38.127	2	0.00099529	34365	160511_QHF_FH_JSI11i_1	64.121	40.745			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59789	246	56325	364403	492065	492065			1	
YSEQTEFGITSDK	1	Unmodified	1503.6729	0.67291837	218	O14920	IKBKB	Inhibitor of nuclear factor kappa-B kinase subunit beta	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	42.23	41.71	2	2.3754E-05	37654	160511_QHF_FH_JSI11i_1	83.226	69.456			0.50786	0.55087	24.623	2	1	Median	NaN	NaN	NaN	0	0	Median	0.40984	0.46284	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.62931	0.65564	NaN	1	1	Median	56099000	37647000	18452000	0	0	0	20695000	12718000	7977800	0	0	0	35404000	24929000	10474000	59790	218	56326	364404;364405;364406	492066;492067;492068	492066			3	
YSERYDPEPK	1	Unmodified	1282.583	0.58298115	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			2									1	1	15.045	15.076	3	0.026254	12272	160511_QHF_FH_JSI11i_3	33.088	28.915			1.1854	1.1567	10.04	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3341	1.2418	NaN	1	0	Median	1.0534	1.0774	NaN	1	0	Median	135070000	58486000	76582000	0	0	0	0	0	0	67434000	23942000	43492000	67634000	34544000	33089000	59791	2558	56327	364407;364408	492069	492069			1	
YSESAGGFYYVESGK	1	Unmodified	1642.7151	0.71511753	2303	Q12769	NUP160	Nuclear pore complex protein Nup160	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								2	3	3	3	51.552	50.727	2	1.1835E-07	45871	160511_QHF_FH_JSI10i_1	174.9	156.84			0.79426	0.80381	33.433	9	8	Median	0.94857	0.80381	NaN	1	1	Median	0.57379	0.67712	19.833	3	3	Plateau	0.87382	0.86005	65.453	2	2	Median	0.93163	1.0148	36.975	3	2	Median	494240000	273490000	220750000	22428000	5620900	16807000	182560000	114320000	68244000	142690000	76362000	66328000	146560000	77186000	69376000	59792	2303	56328	364409;364410;364411;364412;364413;364414;364415;364416;364417;364418;364419	492070;492071;492072;492073;492074;492075;492076;492077;492078;492079;492080	492075			11	
YSESLLCSNLESATYSNR	0	Unmodified	2092.9371	0.93714833	2707	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.5	0.5	2	2									1		3	65.15	64.388	2	1.7694E-06	55236	160511_QHF_FH_JSI12i_2	131.26	123.35			0.79574	0.86447	64.116	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.7525	0.86171	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4962	1.6148	74.779	2	1	Median	61372000	28643000	32728000	0	0	0	26611000	13334000	13277000	0	0	0	34761000	15310000	19451000	59793	2707	56329	364420;364421;364422;364423	492081;492082;492083	492081			3	
YSESLLGVPIAYDNIK	1	Unmodified	1780.9247	0.92471638	2810	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		89.529	89.169	2	9.8037E-05	81236	160511_QHF_FH_JSI11i_1	96.745	72.894			0.87903	0.8391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.87903	0.8391	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	10480000	3833900	6646000	0	0	0	0	0	0	10480000	3833900	6646000	0	0	0	59794	2810	56330	364424	492084	492084			1	
YSEVFEAINITNNEK	1	Unmodified	1769.8472	0.84719434	2076	P68400;Q8NEV1	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		7								1	2	2	2	72.623	71.72	2;3	9.3698E-17	63659	160511_QHF_FH_JSI10i_2	124.86	110.95			0.37509	0.40242	66.234	6	6	Median	0.35001	0.30126	NaN	1	1	Median	0.33337	0.40399	NaN	1	1	Median	0.8732	0.86726	109.14	2	2	Median	0.40422	0.44903	27.404	2	2	Median	237560000	156350000	81208000	28637000	22112000	6525400	25249000	17836000	7413500	78446000	44806000	33641000	105220000	71596000	33628000	59795	2076	56331	364425;364426;364427;364428;364429;364430;364431	492085;492086;492087;492088;492089;492090;492091;492092	492092			8	
YSEVFEAINITNNER	0	Unmodified	1797.8533	0.85334235	1165	P19784	CSNK2A2	Casein kinase II subunit alpha'	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				72.941	72.106	2	1.0953E-16	63616	160511_QHF_FH_JSI9i_2	123.95	85.166			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59796	1165	56332	364432	492093	492093			1	
YSFGATCVK	1	Unmodified	1031.4746	0.47461667	774	P00533	EGFR	Epidermal growth factor receptor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		35.143	34.72	2	0.029619	29536	160511_QHF_FH_JSI11i_2	48.283	31.507			1.2517	1.2443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2517	1.2443	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	32653000	16209000	16444000	0	0	0	0	0	0	32653000	16209000	16444000	0	0	0	59797	774	56333	364433	492094	492094			1	
YSFLQFDPAPR	0	Unmodified	1339.6561	0.65608651	2065;2014	P62714;P67775	PPP2CB;PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.58	6.51	2	4	2					1	3	2	3	4	3	79.623	76.385	2	1.195E-23	69927	160511_QHF_FH_JSI11i_3	180.67	171.46			1.1272	1.0461	20.733	12	2	Median	1.2333	1.048	1.1071	2	0	Median	0.81324	1.0055	27.479	3	1	Median	1.2176	1.1716	21.915	4	0	Median	0.93883	1.0523	28.071	3	1	Median	2809900000	1311900000	1498000000	354840000	164860000	189980000	551390000	292620000	258760000	1155800000	523560000	632200000	747910000	330840000	417070000	59798	2014;2065	56334	364434;364435;364436;364437;364438;364439;364440;364441;364442;364443;364444;364445	492095;492096;492097;492098;492099;492100;492101;492102;492103;492104;492105;492106;492107;492108;492109;492110;492111;492112	492095			18	
YSFMATVTK	1	Unmodified	1046.5107	0.51066783	389	O43865	AHCYL1	Putative adenosylhomocysteinase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02		3	4					1	2	3	3	3	1	53.666	50.19	2	0.00025167	44370	160511_QHF_FH_JSI11i_3	84.213	73.798			1.2144	1.2271	20.409	10	3	Median	1.614	1.3236	11.194	3	1	Median	1.1212	1.2747	21.229	3	2	Median	1.0448	1.0086	33.422	3	0	Median	1.098	1.129	NaN	1	0	Median	1910200000	871210000	1039000000	272050000	102740000	169310000	406180000	200870000	205310000	637900000	308870000	329030000	594050000	258740000	335300000	59799	389	56335	364446;364447;364448;364449;364450;364451;364452;364453;364454;364455	492113;492114;492115;492116;492117;492118;492119;492120;492121;492122;492123;492124;492125;492126	492114			14	
YSFMAVIHFAGLK	1	Unmodified	1482.7693	0.76934213	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.1	5.96			3						7	3	3	3	1	89.649	83.278	2;3	9.4968E-22	45196	160513_QHF_FH_JSI10Kac_6	185.71	164.97			0.73702	0.84072	33.217	9	1	Median	0.82134	0.69391	30.113	3	1	Plateau	0.70453	0.84072	12.087	3	0	Median	1.1205	1.0685	12.539	2	0	Median	1.0839	1.1377	NaN	1	0	Median	2598700000	1394700000	1204000000	737380000	416120000	321250000	950300000	546290000	404000000	689060000	332540000	356510000	221970000	99769000	122200000	59800	2533	56336	364456;364457;364458;364459;364460;364461;364462;364463;364464;364465	492127;492128;492129;492130;492131;492132;492133;492134;492135;492136;492137;492138;492139;492140;492141	492141			15	
YSFMAVIHFAGLK	1	Oxidation (M)	1498.7643	0.76425675	2533	Q14376	GALE	UDP-glucose 4-epimerase	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				81.855	73.229	3	0.0019954	39901	160513_QHF_FH_JSI9Kac_6	50.675	38.315			0.75923	0.66484	NaN	1	0	Median	0.75923	0.66484	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80530000	46317000	34213000	80530000	46317000	34213000	0	0	0	0	0	0	0	0	0	59801	2533	56336	364466	492142	492142		1999	1	
YSFQDFVSHFHVLLPR	0	Unmodified	1991.0054	0.0053667345	39	B2RTY4	MYO9A	Unconventional myosin-IXa	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		93.352	85.801	4	1.6907E-07	49851	160513_QHF_FH_JSI10Kac_6	106.36	99.139			1.2753	1.3571	30.221	2	1	Median	NaN	NaN	NaN	0	0	Median	1.4093	1.6805	NaN	1	0	Median	1.1541	1.096	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	114560000	37617000	76944000	0	0	0	66231000	27410000	38821000	48330000	10207000	38123000	0	0	0	59802	39	56337	364467;364468	492143;492144;492145;492146	492144			4	
YSGAYGASVSDEELK	1	Unmodified	1574.71	0.71003215	5098	Q9NX63	CHCHD3	MICOS complex subunit MIC19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								3	2	1	1	42.314	41.602	2	2.9071E-21	37387	160511_QHF_FH_JSI10i_1	172.76	158.55			0.91889	1.0452	21.091	5	0	Median	0.7916	0.65628	NaN	1	0	Median	0.84761	1.0237	10.507	2	0	Median	1.0884	1.0495	NaN	1	0	Median	1.0008	1.0452	NaN	1	0	Median	1912100000	963950000	948180000	200310000	101530000	98780000	638410000	365760000	272650000	494240000	247340000	246900000	579170000	249330000	329850000	59803	5098	56338	364469;364470;364471;364472;364473;364474;364475	492147;492148;492149;492150;492151;492152;492153;492154;492155;492156;492157;492158;492159;492160	492154			14	
YSGDQILIR	0	Unmodified	1063.5662	0.56620887	5285	Q9UGP8	SEC63	Translocation protein SEC63 homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		42.288	41.814	2	0.060479	35975	160511_QHF_FH_JSI11i_2	51.113	37.394			0.79599	0.79651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.79599	0.79651	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	86564000	44710000	41854000	0	0	0	0	0	0	86564000	44710000	41854000	0	0	0	59804	5285	56339	364476	492161	492161			1	
YSGETVQER	0	Unmodified	1067.4884	0.48835248	4907	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	yes	yes	0	0	0	0		By MS/MS			1	0	1										1			10.323	10.088	2	0.05804	7865	160511_QHF_FH_JSI10i_1	52.786	32.087			0.7515	0.8845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.7515	0.8845	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90046000	52442000	37604000	0	0	0	90046000	52442000	37604000	0	0	0	0	0	0	59805	4907	56340	364477	492162	492162			0	
YSGGNYRDNYDN	0	Unmodified	1436.5593	0.55928559	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		16.074	16.074	2	0.00054453	13247	160511_QHF_FH_JSI11i_3	93.556	82.336			0.98418	0.91087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98418	0.91087	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114580000	61187000	53397000	0	0	0	0	0	0	114580000	61187000	53397000	0	0	0	59806	2141	56341	364478	492163;492164	492163			2	
YSGGPQIVK	1	Unmodified	947.50763	0.50763136	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	25.231	24.348	2	0.014224	20891	160511_QHF_FH_JSI9i_2	53.775	41.344			0.92556	0.93209	16.637	4	0	Median	1.0335	0.88785	NaN	1	0	Median	0.80205	0.97855	NaN	1	0	Median	0.82891	0.83944	NaN	1	0	Median	1.0984	1.2244	NaN	1	0	Median	315140000	168910000	146230000	59361000	28921000	30440000	54696000	33768000	20927000	111420000	60145000	51270000	89672000	46075000	43597000	59807	2570	56342	364479;364480;364481;364482	492165;492166	492166			2	
YSGGPQIVKK	2	Unmodified	1075.6026	0.60259438	2570	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			6							1	1	1	3	16.946	16.599	2;3	0.0020598	13244	160511_QHF_FH_JSI12i_3	58.592	50.357			0.4416	0.44984	52.544	6	6	Plateau	0.62103	0.51217	NaN	1	1	Median	0.79916	0.93283	NaN	1	1	Median	1.8046	1.7211	NaN	1	1	Median	0.4416	0.44984	55.512	3	3	Plateau	344710000	190890000	153820000	68136000	33763000	34373000	57505000	29549000	27956000	18080000	3598800	14482000	200990000	123980000	77013000	59808	2570	56343	364483;364484;364485;364486;364487;364488	492167;492168;492169;492170;492171;492172	492171			6	
YSGHLLLAHIIAK	1	Unmodified	1434.8347	0.83471958	5618	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	1	2	2	2	68.095	59.026	3;4	6.3784E-06	31304	160513_QHF_FH_JSI9Kac_6	91.858	76.958			0.97421	0.83071	61.136	7	2	Median	1.012	0.83071	NaN	1	0	Median	1.1876	1.4167	130.66	2	1	Median	0.96478	0.93919	28.811	2	1	Median	0.77159	0.84037	32.742	2	0	Median	189780000	95248000	94535000	15216000	7611200	7605300	57404000	26927000	30477000	85579000	42915000	42664000	31584000	17795000	13789000	59809	5618	56344	364489;364490;364491;364492;364493;364494;364495	492173;492174;492175;492176;492177;492178;492179;492180;492181;492182	492176			10	
YSGKEGDK	2	Acetyl (K)	924.41888	0.41887593	1278	P26447	S100A4	Protein S100-A4	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13.2	0.433						3	1				1	1	2	8.4106	1.0774	2	0.012677	3162	160513_QHF_FH_JSI12Kac_3	70.908	46.936			0.63783	0.68674	34.197	4	0	Median	NaN	NaN	NaN	0	0	Median	0.87994	1.0535	NaN	1	0	Median	0.523	0.51823	NaN	1	0	Median	0.63024	0.68674	30.624	2	0	Median	111580000	67741000	43841000	0	0	0	32006000	15213000	16792000	37880000	27533000	10347000	41695000	24994000	16701000	59810	1278	56345	364496;364497;364498;364499	492183;492184;492185;492186;492187	492185	1188		5	
YSGLIVNK	1	Unmodified	892.50182	0.5018177	3308	Q86TI2	DPP9	Dipeptidyl peptidase 9	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	31.262	31.184	2	0.058176	26359	160511_QHF_FH_JSI12i_3	44.395	12.459			6.0984	6.1626	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6.0984	6.1626	NaN	1	1	Median	232200000	41953000	190250000	0	0	0	0	0	0	0	0	0	232200000	41953000	190250000	59811	3308	56346	364500	492188	492188			1	
YSGPEDDAAISLAFSK	1	Unmodified	1669.7835	0.78353145	999	P11388	TOP2A	DNA topoisomerase 2-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									1	3	1	2	73.5	73.135	2;3	1.0655E-05	66717	160511_QHF_FH_JSI12i_1	86.756	71.612			0.9315	0.98618	37.438	3	2	Median	NaN	NaN	NaN	0	0	Median	0.51809	0.60427	NaN	1	0	Median	1.2979	1.2606	NaN	1	1	Median	0.9315	0.98618	NaN	1	1	Median	187850000	106100000	81750000	0	0	0	68728000	46149000	22579000	59309000	27652000	31657000	59814000	32300000	27513000	59812	999	56347	364501;364502;364503;364504;364505;364506;364507	492189;492190;492191;492192;492193;492194;492195;492196	492191			8	
YSGRDSLIFLVDASK	1	Unmodified	1669.8675	0.86753585	1023	P12956	XRCC6	X-ray repair cross-complementing protein 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			2							1	1			78.198	76.789	3	0.017604	64468	160511_QHF_FH_JSI10i_3	44.005	33.061			2.177	2.1011	52.12	2	2	Median	1.7911	1.4534	NaN	1	1	Median	2.6462	3.0374	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	60664000	21328000	39336000	23956000	9940000	14016000	36708000	11388000	25320000	0	0	0	0	0	0	59813	1023	56348	364508;364509	492197;492198	492197			2	
YSGSEGSTQTLTK	1	Unmodified	1357.6361	0.63613893	1268	P25815	S100P	Protein S100-P	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	2.63	5	8	4			1				7	5	3	3	18.015	16.284	2	1.6469E-62	5486	160513_QHF_FH_JSI9Kac_3	218.75	193.98			1.0674	1.0228	44.56	18	14	Median	1.2701	1.0307	47.911	7	6	Median	0.84595	0.99184	41.394	5	4	Median	1.1277	1.1008	27.173	3	2	Median	0.84787	0.90183	73.839	3	2	Median	10848000000	5235300000	5612600000	3546700000	1283300000	2263400000	2667800000	1581400000	1086400000	2304000000	1210900000	1093100000	2329400000	1159700000	1169700000	59814	1268	56349	364510;364511;364512;364513;364514;364515;364516;364517;364518;364519;364520;364521;364522;364523;364524;364525;364526;364527	492199;492200;492201;492202;492203;492204;492205;492206;492207;492208;492209;492210;492211;492212;492213;492214;492215;492216;492217;492218	492207			20	
YSGSYNDYLR	0	Unmodified	1236.5411	0.54111633	4197	Q96PK6	RBM14	RNA-binding protein 14	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	40.806	39.845	2	6.9071E-06	34021	160511_QHF_FH_JSI12i_2	107.57	87.054			0.90722	0.95503	3.6243	4	0	Median	1.0883	0.92784	NaN	1	0	Median	0.79686	0.98303	NaN	1	0	Median	0.91503	0.92548	NaN	1	0	Median	0.89948	0.98993	NaN	1	0	Median	987140000	488430000	498700000	205500000	87244000	118260000	207910000	114090000	93821000	378190000	177120000	201070000	195530000	109980000	85550000	59815	4197	56350	364528;364529;364530;364531	492219;492220;492221;492222;492223	492220			5	
YSGTLNLDR	0	Unmodified	1037.5142	0.5141733	1650	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.33	6.17	3	4	3				1	3	1	4	3	4	4	36.055	32.345	2	1.9696E-06	28128	160511_QHF_FH_JSI9i_2	128.86	111.47			0.93152	0.94819	34.953	15	0	Median	1.2306	1.0209	20.192	4	0	Median	0.98321	1.1843	3.8108	3	0	Plateau	0.69834	0.70428	45.392	4	0	Median	0.85231	0.91528	14.388	4	0	Median	5030900000	2537600000	2493300000	750880000	283070000	467810000	1326100000	692390000	633690000	1648200000	860980000	787260000	1305700000	701130000	604530000	59816	1650	56351	364532;364533;364534;364535;364536;364537;364538;364539;364540;364541;364542;364543;364544;364545;364546	492224;492225;492226;492227;492228;492229;492230;492231;492232;492233;492234;492235;492236;492237;492238;492239;492240	492232			17	
YSGVLSSIGK	1	Unmodified	1009.5444	0.5444108	5158	Q9NZJ7	MTCH1	Mitochondrial carrier homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	3	0			3							1	1		1	45.854	44.717	2	0.0021417	37984	160511_QHF_FH_JSI12i_3	61.65	43.664			0.6799	0.68127	37.084	3	0	Plateau	1.7524	1.4225	NaN	1	0	Median	0.92748	1.0643	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.6799	0.68127	NaN	1	0	Median	403470000	198710000	204760000	78319000	27994000	50325000	112220000	50027000	62198000	0	0	0	212930000	120690000	92234000	59817	5158	56352	364547;364548;364549	492241;492242;492243	492243			3	
YSGVNQSMLFDK	1	Unmodified	1387.6442	0.6442012	3133	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		56.475	55.968	2	0.00069401	48471	160511_QHF_FH_JSI11i_2	71.03	51.269			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59818	3133	56353	364550	492244	492244			1	
YSHEVLSEENFK	1	Unmodified	1480.6834	0.68342347	3250	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	3.87		11							1	3	2	4	3	36.315	34.651	2;3	1.1084E-05	29450	160511_QHF_FH_JSI11i_2	82.912	79.572			0.88309	0.94206	35.993	12	8	Median	0.96514	0.81193	28.045	3	2	Median	0.7742	0.94206	7.3605	2	1	Median	0.92712	0.92715	57.772	4	3	Median	0.94735	1.0725	31.741	3	2	Median	1020400000	538770000	481590000	278570000	151720000	126850000	241480000	122630000	118850000	274360000	152480000	121890000	225950000	111940000	114000000	59819	3250	56354	364551;364552;364553;364554;364555;364556;364557;364558;364559;364560;364561;364562	492245;492246;492247;492248;492249;492250;492251;492252;492253;492254;492255;492256;492257;492258;492259;492260	492254			16	
YSHLQPGDHLTDITLK	1	Unmodified	1836.937	0.9370124	2614	Q15046	KARS	Lysine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.6	0.49		4	6							1	1	4	4	52.397	51.94	2;3;4	2.1404E-08	45473	160511_QHF_FH_JSI11i_3	138.39	132.85			1.0639	1.0704	13.297	10	2	Median	1.3068	1.1122	NaN	1	1	Median	0.88288	1.0766	NaN	1	0	Median	1.0784	1.0536	8.628	4	1	Median	1.035	1.0462	20.251	4	0	Median	3632600000	1804100000	1828500000	84940000	36846000	48094000	127450000	71832000	55614000	1533900000	729740000	804170000	1886300000	965660000	920600000	59820	2614	56355	364563;364564;364565;364566;364567;364568;364569;364570;364571;364572	492261;492262;492263;492264;492265;492266;492267;492268;492269;492270;492271;492272;492273;492274;492275;492276;492277	492265			17	
YSHNSLMVQAIK	1	Unmodified	1389.7075	0.70747015	5625	Q9Y4E6	WDR7	WD repeat-containing protein 7	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	37.652	37.489	3	0.0019646	31800	160511_QHF_FH_JSI12i_3	39.006	20.99			1.0876	1.0934	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0876	1.0934	NaN	1	0	Median	86902000	34898000	52004000	0	0	0	0	0	0	0	0	0	86902000	34898000	52004000	59821	5625	56356	364573	492278	492278			1	
YSHSGSSSPDTK	1	Unmodified	1251.5368	0.53675924	5474	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.21	5.31		6	5					2	1	2	2	5	5	5.0844	2.9332	2;3	7.4835E-11	2611	160511_QHF_FH_JSI11i_3	147.74	137.03			0.77053	0.80808	16.43	13	2	Median	1.0352	0.87528	5.4191	2	0	Median	0.63844	0.78658	17.75	2	0	Median	0.77053	0.75508	23.614	5	1	Median	0.76582	0.79616	8.7859	4	1	Median	1111300000	613890000	497440000	67006000	21600000	45406000	184850000	123840000	61011000	447710000	227690000	220020000	411760000	240760000	171000000	59822	5474	56357	364574;364575;364576;364577;364578;364579;364580;364581;364582;364583;364584;364585;364586;364587	492279;492280;492281;492282;492283;492284;492285;492286;492287;492288;492289;492290;492291	492280			13	
YSHVQEVQER	0	Unmodified	1273.6051	0.60511357	3921	Q93008;O00507	USP9X;USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		8	4							2	2	4	4	9.7672	9.4922	2;3	3.1935E-10	6821	160511_QHF_FH_JSI12i_3	120.96	89.529			0.87934	0.94275	33.165	11	1	Median	1.3309	1.1222	NaN	1	0	Median	0.58206	0.71891	1.3998	2	0	Median	1.1211	1.1091	55.014	4	1	Median	0.86837	0.93735	8.9514	4	0	Median	890990000	504340000	386650000	64788000	28743000	36045000	130150000	87282000	42870000	434390000	259950000	174440000	261660000	128360000	133300000	59823	3921	56358	364588;364589;364590;364591;364592;364593;364594;364595;364596;364597;364598;364599	492292;492293;492294;492295;492296;492297;492298;492299;492300;492301;492302;492303;492304;492305;492306;492307	492305			16	
YSIAITWGGHHIPK	1	Unmodified	1578.8307	0.83069683	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.7	6.39			16						23	10	7	9	13	63.363	58.029	2;3;4	8.2287E-08	31243	160513_QHF_FH_JSI10Kac_6	112.42	99.656			1.0403	1.0502	32.894	34	9	Median	0.96093	0.82701	29.434	9	2	Median	0.76044	0.89917	9.9985	5	1	Median	1.3422	1.2655	29.901	9	2	Median	1.1256	1.1719	24.167	11	4	Median	3606700000	1838200000	1768400000	1024300000	529810000	494470000	1164100000	673170000	490910000	572230000	248170000	324060000	846070000	387080000	459000000	59824	512	56359	364600;364601;364602;364603;364604;364605;364606;364607;364608;364609;364610;364611;364612;364613;364614;364615;364616;364617;364618;364619;364620;364621;364622;364623;364624;364625;364626;364627;364628;364629;364630;364631;364632;364633;364634;364635;364636;364637;364638	492308;492309;492310;492311;492312;492313;492314;492315;492316;492317;492318;492319;492320;492321;492322;492323;492324;492325;492326;492327;492328;492329;492330;492331;492332;492333;492334;492335;492336;492337;492338;492339;492340;492341;492342;492343;492344;492345;492346;492347;492348;492349;492350;492351;492352;492353;492354;492355;492356;492357;492358;492359;492360;492361;492362;492363	492360			50	
YSIGGLSPFSEYAFR	0	Unmodified	1692.8148	0.814772	971	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		3	3							1	2	1	2	93.34	93.073	2	2.8889E-05	80569	160511_QHF_FH_JSI12i_3	122.51	109.89			0.86785	1.0929	27.404	4	1	Linear	NaN	NaN	NaN	0	0	Median	0.53027	0.63159	NaN	1	1	Median	1.1359	1.0904	NaN	1	0	Median	0.86785	0.91109	25.979	2	0	Median	149520000	74204000	75318000	0	0	0	18039000	12416000	5622800	54630000	25365000	29265000	76852000	36423000	40430000	59825	971	56360	364639;364640;364641;364642;364643;364644	492364;492365;492366;492367;492368;492369;492370;492371;492372;492373	492373			10	
YSILSELYELIGFHR	0	Unmodified	1838.9567	0.95668521	4203	Q96Q05	TRAPPC9	Trafficking protein particle complex subunit 9	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			98.58	92.859	3	1.6627E-06	54341	160513_QHF_FH_JSI10Kac_6	106.42	89.739			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59826	4203	56361	364645	492374	492374			1	
YSIVFIAR	0	Unmodified	967.5491	0.54910224	48	CON__P01045-1;CON__Q2KJ62;CON__P01044-1			yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	72.122	63.359	2	0.0011123	33159	160513_QHF_FH_JSI12Kac_6	102.3	82.936		+	0.93563	0.94808	6.0718	4	0	Median	1.219	1.0359	NaN	1	0	Median	0.7896	0.9374	NaN	1	0	Median	0.94478	0.8959	NaN	1	0	Median	0.92657	0.95889	NaN	1	0	Median	112180000	56440000	55745000	18510000	8074300	10435000	44128000	25174000	18954000	29262000	15121000	14141000	20285000	8070100	12215000	59827	48	56362	364646;364647;364648;364649	492375;492376;492377;492378;492379	492378			5	
YSKHDMNK	2	Acetyl (K)	1063.4757	0.4756793	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		2	1		14.863	5.5578	3	0.013658	5389	160513_QHF_FH_JSI10Kac_5	47.198	36.784			0.55304	0.58992	68.39	2	0	Median	NaN	NaN	NaN	0	0	Median	0.79209	0.95679	NaN	1	0	Median	0.38614	0.36373	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	35381000	25308000	10073000	0	0	0	6415200	3369500	3045700	28965000	21938000	7027000	0	0	0	59828	805	56363	364650;364651;364652	492380;492381;492382	492382	442		3	
YSKHDMNK	2	Acetyl (K);Oxidation (M)	1079.4706	0.47059393	805	P04083	ANXA1	Annexin A1	yes	yes	1	0	1	1			By MS/MS	By MS/MS	15	0								2				1	1	6.5397	-2.9049	3	0.038308	2308	160513_QHF_FH_JSI11Kac_5	33.378	18.704			0.50582	0.52943	47.259	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.38627	0.37903	NaN	1	0	Median	0.66236	0.73949	NaN	1	0	Median	15639000	11246000	4393800	0	0	0	0	0	0	9577600	7303400	2274200	6061900	3942300	2119600	59829	805	56363	364653;364654	492383;492384;492385	492383	442		3	
YSKSFSDTLK	2	Acetyl (K)	1216.5976	0.59756858	4445	Q9BUL8	PDCD10	Programmed cell death protein 10	yes	yes	1	0	0	1		By MS/MS			14	0							1				1			54.837	44.254	2	0.018401	24567	160513_QHF_FH_JSI10Kac_4	52.79	39.412			0.97524	1.1462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.97524	1.1462	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6149700	3776000	2373700	0	0	0	6149700	3776000	2373700	0	0	0	0	0	0	59830	4445	56364	364655	492386	492386	3162		1	
YSLDLASLILYAYQLSTALAYLESK	1	Unmodified	2808.4837	0.4837146	2229	Q05397	PTK2	Focal adhesion kinase 1	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			106.07	100.35	3	2.72E-42	59483	160513_QHF_FH_JSI10Kac_6	163.71	149.65			0.77357	0.916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.77357	0.916	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	203880000	102100000	101790000	0	0	0	203880000	102100000	101790000	0	0	0	0	0	0	59831	2229	56365	364656	492387	492387			1	
YSLDPENPTK	1	Unmodified	1162.5506	0.55061839	1143	P18621	RPL17	60S ribosomal protein L17	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.08	5.81	4	4				3	2			2	4	4	3	40.47	36.008	2	3.667E-14	32498	160511_QHF_FH_JSI11i_1	161.92	145.71			0.94425	0.99353	8.4344	12	2	Median	1.1232	0.93842	13.612	2	1	Median	0.8903	1.0586	7.8807	4	0	Median	0.96573	0.94203	6.9281	3	0	Plateau	0.88002	0.96395	3.1838	3	1	Median	6821900000	3514200000	3307700000	971840000	441680000	530160000	1907300000	1131200000	776010000	2251900000	1051800000	1200100000	1691000000	889550000	801400000	59832	1143	56366	364657;364658;364659;364660;364661;364662;364663;364664;364665;364666;364667;364668;364669	492388;492389;492390;492391;492392;492393;492394;492395;492396;492397;492398;492399;492400;492401;492402;492403;492404;492405;492406;492407;492408;492409;492410;492411	492390			24	
YSLEPVAVELK	1	Unmodified	1246.6809	0.68090428	775	P00558	PGK1	Phosphoglycerate kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.12	6.16	4	5	4			2	6	5		6	6	7	7	72.864	67.368	2	3.6379E-23	62337	160511_QHF_FH_JSI12i_1	174.98	134.63			0.96044	0.98728	19.639	26	5	Median	1.1401	0.92194	12.938	6	0	Median	0.85732	1.0136	13.691	6	0	Median	0.99914	0.98436	20.556	7	4	Median	0.93567	0.99258	26.409	7	1	Median	32981000000	15920000000	17061000000	4625900000	2040900000	2585000000	8010300000	4340000000	3670200000	13268000000	6190000000	7077600000	7076800000	3348900000	3727900000	59833	775	56367	364670;364671;364672;364673;364674;364675;364676;364677;364678;364679;364680;364681;364682;364683;364684;364685;364686;364687;364688;364689;364690;364691;364692;364693;364694;364695	492412;492413;492414;492415;492416;492417;492418;492419;492420;492421;492422;492423;492424;492425;492426;492427;492428;492429;492430;492431;492432;492433;492434;492435;492436;492437;492438;492439;492440;492441;492442;492443;492444;492445;492446;492447;492448;492449;492450;492451;492452;492453;492454;492455;492456;492457;492458;492459;492460;492461;492462;492463;492464;492465;492466;492467;492468;492469	492429			58	
YSLEQDIR	0	Unmodified	1022.5033	0.50327426	5230	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	0.632						1	3	1		1	2	1	1	45.409	35.436	2	8.0687E-07	20045	160513_QHF_FH_JSI10Kac_4	138.78	80.591			0.90935	0.9858	8.0242	5	0	Median	1.285	1.0969	NaN	1	0	Median	0.80838	0.95612	9.2895	2	0	Median	0.93267	0.92607	NaN	1	0	Median	0.90935	0.9858	NaN	1	0	Median	315010000	174020000	140990000	24592000	8791800	15801000	141010000	87016000	53990000	29710000	13131000	16579000	119700000	65081000	54623000	59834	5230	56368	364696;364697;364698;364699;364700	492470;492471;492472;492473;492474	492471			5	
YSLFLPLHELWK	1	Unmodified	1544.8391	0.83913625	718	O95707	POP4	Ribonuclease P protein subunit p29	yes	yes	0	0	0	0	By matching			By MS/MS	16	0									2	1			1	90.896	81.817	3	0.016392	44104	160513_QHF_FH_JSI12Kac_6	51.875	38.196			1.1949	1.139	7.241	2	0	Median	1.2477	1.0821	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1443	1.1988	NaN	1	0	Median	83315000	38634000	44681000	34690000	16431000	18259000	0	0	0	0	0	0	48625000	22203000	26422000	59835	718	56369	364701;364702	492475	492475			0	
YSLIVAQHVEK	1	Unmodified	1285.703	0.7030367	2414	Q13439	GOLGA4	Golgin subfamily A member 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			47.432	38.821	3	0.014837	21436	160513_QHF_FH_JSI10Kac_6	25.731	19.498			1.0272	1.186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0272	1.186	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	13653000	7100000	6553400	0	0	0	13653000	7100000	6553400	0	0	0	0	0	0	59836	2414	56370	364703	492476	492476			1	
YSLKPNDQILAEDK	2	Unmodified	1632.8359	0.83590137	1856	P55263	ADK	Adenosine kinase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.46	3.37		6	6					1		1	4	5	3	47.938	46.412	2;3	0.00011579	40922	160511_QHF_FH_JSI10i_2	100.45	84.818			0.90446	1.0246	18.765	12	10	Median	1.3955	1.1897	NaN	1	1	Median	0.87899	1.0812	30.305	3	3	Median	1.0521	0.98275	16.734	5	4	Median	0.86372	0.8619	13.36	3	2	Median	2567100000	1464100000	1103000000	148310000	67297000	81014000	343610000	213430000	130180000	970560000	555040000	415530000	1104700000	628340000	476320000	59837	1856	56371	364704;364705;364706;364707;364708;364709;364710;364711;364712;364713;364714;364715;364716	492477;492478;492479;492480;492481;492482;492483;492484;492485;492486;492487;492488;492489;492490	492488			14	
YSLLPFWYTLLYQAHR	0	Unmodified	2070.0727	0.072718018	2569	Q14697	GANAB	Neutral alpha-glucosidase AB	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.6	1.87				8	8	8	6	3	14	5	14	16	12	97.827	88.708	2;3	1.3947E-121	47996	160513_QHF_FH_JSI12Kac_6	325.03	295.49			1.0697	1.1195	29.057	37	8	Median	1.0583	0.95809	23.714	2	1	Median	1.2846	1.4453	30.665	13	5	Median	0.89588	0.89092	18.748	13	1	Median	1.0697	1.1586	8.0504	9	1	Median	123920000000	54458000000	69461000000	5650700000	2675100000	2975500000	39921000000	20859000000	19062000000	46469000000	17183000000	29286000000	31878000000	13741000000	18137000000	59838	2569	56372	364717;364718;364719;364720;364721;364722;364723;364724;364725;364726;364727;364728;364729;364730;364731;364732;364733;364734;364735;364736;364737;364738;364739;364740;364741;364742;364743;364744;364745;364746;364747;364748;364749;364750;364751;364752;364753;364754;364755;364756;364757;364758;364759;364760;364761;364762;364763	492491;492492;492493;492494;492495;492496;492497;492498;492499;492500;492501;492502;492503;492504;492505;492506;492507;492508;492509;492510;492511;492512;492513;492514;492515;492516;492517;492518;492519;492520;492521;492522;492523;492524;492525;492526;492527;492528;492529;492530;492531;492532;492533;492534;492535;492536;492537;492538;492539;492540;492541;492542;492543	492535			52	
YSLPTPK	1	Unmodified	804.43815	0.43815481	5414	Q9ULX3	NOB1	RNA-binding protein NOB1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		32.636	32.346	2	0.048713	28943	160511_QHF_FH_JSI10i_1	43.124	30.135			1.095	1.1411	23.918	2	0	Median	NaN	NaN	NaN	0	0	Median	0.84769	0.96354	NaN	1	0	Median	1.4144	1.3514	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	62069000	29755000	32314000	0	0	0	31344000	16335000	15008000	30725000	13419000	17306000	0	0	0	59839	5414	56373	364764;364765	492544	492544			1	
YSLQSANASSLSSGQLK	1	Unmodified	1739.869	0.86899241	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								1	3	2	1	51.203	50.571	2	6.0018E-52	43739	160511_QHF_FH_JSI11i_2	214.23	187.53			0.84803	0.86114	17.213	5	3	Median	NaN	NaN	NaN	0	0	Median	0.8007	0.9176	28.86	2	2	Median	0.95664	0.93246	17.569	2	1	Median	0.77093	0.86114	NaN	1	0	Median	146350000	84697000	61652000	0	0	0	51188000	28038000	23150000	58635000	33362000	25274000	36526000	23297000	13229000	59840	4679	56374	364766;364767;364768;364769;364770;364771;364772	492545;492546;492547;492548;492549;492550;492551;492552;492553;492554	492553			10	
YSLQSANASSLSSGQLKSPSLSQSQASR	1	Unmodified	2868.4213	0.42134213	4679	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			50.913	49.965	4	0.049958	43989	160511_QHF_FH_JSI10i_2	16.447	4.8156			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	42608000	0	42608000	0	0	0	42608000	0	42608000	0	0	0	0	0	0	59841	4679	56375	364773	492555	492555			1	
YSLQYYMGLAEELVR	0	Unmodified	1833.8971	0.89712142	1002	P11498	PC	Pyruvate carboxylase, mitochondrial	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			96.489	90.768	2	0.00047947	52608	160513_QHF_FH_JSI10Kac_6	134.06	117.92			1.2646	1.4785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2646	1.4785	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	117710000	53777000	63932000	0	0	0	117710000	53777000	63932000	0	0	0	0	0	0	59842	1002	56376	364774	492556	492556			1	
YSLRDEFPLLTTK	1	Unmodified	1581.8403	0.84025847	815	P04818	TYMS	Thymidylate synthase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		3	0			6							2	1	3		79.906	79.236	2;3	2.7619E-05	70556	160511_QHF_FH_JSI11i_3	89.466	77.775			1.0115	0.86073	18.664	4	1	Median	1.2532	1.019	15.36	2	1	Median	NaN	NaN	NaN	0	0	Median	0.84923	0.77292	6.7012	2	0	Median	NaN	NaN	NaN	0	0	Median	430680000	218270000	212410000	245150000	107420000	137730000	0	0	0	185530000	110850000	74676000	0	0	0	59843	815	56377	364775;364776;364777;364778;364779;364780	492557;492558;492559;492560;492561;492562;492563	492557			7	
YSLVEAK	1	Unmodified	808.43307	0.43306943	1085	P15924	DSP	Desmoplakin	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1.25	0.433	3	1									1	2	1	25.675	25.331	2	0.0099224	21119	160511_QHF_FH_JSI11i_2	77.058	27.699			0.90294	0.98906	37.222	4	0	Median	NaN	NaN	NaN	0	0	Median	0.69477	0.82299	NaN	1	0	Median	1.3242	1.2906	11.635	2	0	Median	0.60124	0.61157	NaN	1	0	Median	512100000	249010000	263090000	0	0	0	95339000	54319000	41020000	334040000	151900000	182150000	82719000	42801000	39918000	59844	1085	56378	364781;364782;364783;364784	492564;492565	492565			2	
YSLVSEQLEPAATSTYR	0	Unmodified	1913.9371	0.93707198	5608	Q9Y446	PKP3	Plakophilin-3	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2	0		3								1		2		64.246	63.579	2	1.0564E-07	55422	160511_QHF_FH_JSI11i_2	162.32	138.47			0.73143	0.73697	48.293	3	2	Median	1.3798	1.2106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.56797	0.58279	33.196	2	1	Median	NaN	NaN	NaN	0	0	Median	79698000	37949000	41749000	18190000	5174900	13015000	0	0	0	61508000	32774000	28734000	0	0	0	59845	5608	56379	364785;364786;364787	492566;492567;492568	492567			3	
YSNDLYELQASR	0	Unmodified	1457.6787	0.67867245	1743	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.43	4.34	2	4					1			1	2	2	2	48.866	46.632	2	7.7399E-05	40237	160511_QHF_FH_JSI11i_2	93.959	76.095			1.0441	0.98847	10.189	7	0	Median	1.1201	0.94322	NaN	1	0	Median	0.85574	1.0324	11.55	2	0	Median	0.99251	0.96647	3.1839	2	0	Median	1.0638	1.1507	8.6871	2	0	Median	327810000	168080000	159730000	40311000	20589000	19722000	43821000	22426000	21394000	138410000	66170000	72240000	105270000	58891000	46374000	59846	1743	56380	364788;364789;364790;364791;364792;364793;364794	492569;492570;492571;492572;492573;492574;492575;492576;492577;492578;492579	492579			11	
YSNDVTSLPFLLEILTVLPEEVHSR	0	Unmodified	2870.5066	0.50657531	5666	Q9Y5L0	TNPO3	Transportin-3	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	103.96	103.97	3	0.044018	90668	160511_QHF_FH_JSI12i_3	19.25	12.526			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1407800	0	1407800	0	0	0	0	0	0	0	0	0	1407800	0	1407800	59847	5666	56381	364795	492580	492580			1	
YSNEDTLSVALPYFWEHFDK	1	Unmodified	2460.1274	0.12739194	1284	P26641	EEF1G	Elongation factor 1-gamma	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.27	6.61		5	2						4	2	2	4	3	98.841	95.746	2;3	6.823E-79	89197	160511_QHF_FH_JSI11i_2	284.72	264.88			0.88401	0.90377	47.446	11	2	Median	1.0392	0.87167	8.2693	2	0	Median	0.74278	0.89291	10.239	2	0	Median	1.002	1.0249	75.618	4	2	Median	0.87368	0.86865	15.115	3	0	Plateau	6004700000	2997300000	3007400000	571860000	291490000	280380000	826520000	445520000	381000000	2136500000	926900000	1209600000	2469800000	1333400000	1136500000	59848	1284	56382	364796;364797;364798;364799;364800;364801;364802;364803;364804;364805;364806	492581;492582;492583;492584;492585;492586;492587;492588;492589;492590;492591;492592;492593;492594;492595;492596	492589			15	
YSNENLDLAR	0	Unmodified	1193.5677	0.56766543	1459	P36776	LONP1	Lon protease homolog, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	34.139	33.451	2	2.7129E-05	29961	160511_QHF_FH_JSI11i_1	97.277	78.738			1.0159	1.0194	15.143	7	0	Median	1.3854	1.1684	17.153	2	0	Median	0.82224	0.97445	6.3735	2	0	Median	1.1359	1.144	18.339	2	0	Median	0.84716	0.90282	NaN	1	0	Median	1718600000	792350000	926290000	429030000	170040000	258980000	426020000	211870000	214150000	520180000	239860000	280320000	343410000	170570000	172840000	59849	1459	56383	364807;364808;364809;364810;364811;364812;364813	492597;492598;492599;492600;492601;492602;492603;492604;492605;492606	492597			10	
YSNFVSFPLYLNGR	0	Unmodified	1675.8358	0.83584179	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.6	6.17		6	8						6	5	5	6	4	91.99	89.366	2;3	9.0044E-38	41817	160513_QHF_FH_JSI12Kac_6	188.06	170.25			0.89681	1.0149	29.58	20	12	Median	1.2496	1.0598	33.949	5	4	Median	0.8493	1.0132	18.205	5	3	Median	0.90818	0.8627	16.736	6	4	Median	0.94522	1.0146	54.688	4	1	Median	2005500000	1051500000	953980000	456940000	207310000	249630000	878220000	492450000	385770000	386740000	201550000	185190000	283580000	150200000	133380000	59850	2328	56384	364814;364815;364816;364817;364818;364819;364820;364821;364822;364823;364824;364825;364826;364827;364828;364829;364830;364831;364832;364833	492607;492608;492609;492610;492611;492612;492613;492614;492615;492616;492617;492618;492619;492620;492621;492622;492623;492624;492625;492626;492627;492628;492629;492630;492631	492628			25	
YSNSALGHVNCTIK	1	Unmodified	1562.7511	0.75112588	4919	Q9NQC3	RTN4	Reticulon-4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.13	5.97		5	6						4	2	3	6	4	34.622	32.209	2;3	2.184E-05	27902	160511_QHF_FH_JSI11i_3	138.02	114.7			1.0344	1.1751	24.473	14	5	Median	1.2558	1.0786	39.67	2	1	Median	1.0344	1.2409	4.3802	2	0	Median	0.92391	0.87886	20.853	6	3	Median	1.2214	1.2751	11.212	4	1	Median	2124000000	1007000000	1117000000	139610000	72143000	67462000	246310000	118280000	128030000	929580000	468490000	461090000	808520000	348090000	460430000	59851	4919	56385	364834;364835;364836;364837;364838;364839;364840;364841;364842;364843;364844;364845;364846;364847;364848	492632;492633;492634;492635;492636;492637;492638;492639;492640;492641;492642;492643;492644;492645;492646;492647;492648;492649;492650	492634			18	
YSNSEVVTGSGR	0	Unmodified	1254.584	0.58404378	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By matching	1	0	3										1	1	1	15.966	15.695	2	0.0014153	13273	160511_QHF_FH_JSI10i_1	62.894	50.367			0.98606	1.1095	8.0951	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.93111	1.1108	NaN	1	0	Median	0.98606	0.95288	NaN	1	1	Median	1.0529	1.076	NaN	1	0	Median	222700000	116400000	106300000	0	0	0	77017000	40117000	36900000	78044000	38959000	39085000	67643000	37328000	30315000	59852	3229	56386	364849;364850;364851	492651;492652	492652			2	
YSNSEVVTGSGRQEAQK	1	Unmodified	1838.8759	0.8758687	3229	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.843	14.843	3	0.024826	12121	160511_QHF_FH_JSI11i_3	37.092	20.426			0.49538	0.44902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.49538	0.44902	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33239000	22700000	10539000	0	0	0	0	0	0	33239000	22700000	10539000	0	0	0	59853	3229	56387	364852	492653	492653			1	
YSNVIQLLHIK	1	Unmodified	1326.766	0.76597131	2546	Q14571	ITPR2	Inositol 1,4,5-trisphosphate receptor type 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			4						2	2	2	1	1	75.385	72.378	3	4.351E-06	65406	160511_QHF_FH_JSI11i_3	103.91	93.299			0.8313	0.90616	40.565	6	2	Median	1.605	1.3321	0.083022	2	1	Median	0.5936	0.69573	33.375	2	1	Median	0.56326	0.53096	NaN	1	0	Median	0.93837	0.93213	NaN	1	0	Median	446260000	216860000	229400000	76212000	22884000	53328000	143110000	87391000	55721000	123380000	68060000	55324000	103550000	38523000	65025000	59854	2546	56388	364853;364854;364855;364856;364857;364858	492654;492655;492656;492657;492658;492659;492660	492654			7	
YSPDCIIIVVSNPVDILTYVTWK	1	Unmodified	2694.3979	0.39787649	864	P07195	LDHB	L-lactate dehydrogenase B chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS			11.3	6.6		1							2	1	2			101.76	97.919	2;3	1.7223E-168	56053	160513_QHF_FH_JSI10Kac_6	278.39	249.38			1.62	1.5061	30.581	3	1	Median	1.7995	1.5061	NaN	1	1	Median	1.186	1.4147	42.945	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	408060000	162420000	245640000	8326000	1769100	6557000	399730000	160650000	239080000	0	0	0	0	0	0	59855	864	56389	364859;364860;364861	492661;492662;492663;492664	492662			4	
YSPGYNTEVGDK	1	Unmodified	1328.5885	0.58846046	675	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									1		2	27.245	26.572	2	2.6655E-05	23781	160511_QHF_FH_JSI12i_1	114.89	84.639			1.0346	1.0512	56.488	3	3	Plateau	NaN	NaN	NaN	0	0	Median	1.6165	1.9082	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0346	1.0512	63.34	2	2	Median	371600000	215210000	156380000	0	0	0	17033000	4721000	12312000	0	0	0	354560000	210490000	144070000	59856	675	56390	364862;364863;364864	492665;492666;492667	492666			3	
YSPHLLANSK	1	Unmodified	1128.5928	0.59275797	777	P00813	ADA	Adenosine deaminase	yes	yes	0	0	0	0	By MS/MS			By MS/MS	3	0			3							2			1	25.658	24.752	2;3	0.0081704	20355	160511_QHF_FH_JSI12i_3	45.879	33.303			0.55107	0.52808	64.767	3	2	Plateau	1.473	1.2011	62.353	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51593	0.52808	NaN	1	1	Median	413360000	219840000	193520000	124500000	66493000	58011000	0	0	0	0	0	0	288850000	153350000	135500000	59857	777	56391	364865;364866;364867	492668;492669;492670	492670			3	
YSPLEFLR	0	Unmodified	1023.5389	0.53893149	3252	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	76.095	75.248	2	0.020956	65108	160511_QHF_FH_JSI12i_2	45.335	32.846			0.95872	0.98919	4.927	4	0	Median	1.1445	0.99674	NaN	1	0	Median	0.81236	0.9817	NaN	1	0	Median	0.92863	0.96218	NaN	1	0	Median	0.98979	1.0769	NaN	1	0	Median	106520000	52327000	54190000	19196000	9396100	9799800	26649000	12873000	13776000	35706000	17990000	17717000	24966000	12069000	12897000	59858	3252	56392	364868;364869;364870;364871	492671;492672;492673;492674	492671			4	
YSPLHNVK	1	Unmodified	956.50797	0.50796571	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	3	0			7							1	2	2	2	16.489	16.056	2;3	0.0018874	13166	160511_QHF_FH_JSI11i_3	84.244	61.224			1.1462	1.1454	26.981	7	2	Median	1.4112	1.1454	NaN	1	0	Median	1.1362	1.3143	9.2004	2	0	Median	1.087	1.0167	6.2225	2	0	Median	1.1385	1.1553	59.872	2	2	Median	1555800000	807310000	748530000	110680000	38976000	71700000	239610000	117980000	121630000	543270000	284100000	259160000	662290000	366250000	296030000	59859	1615	56393	364872;364873;364874;364875;364876;364877;364878	492675;492676;492677;492678;492679;492680	492676			6	
YSPPAISPLVSEK	1	Unmodified	1386.7395	0.73948179	2567	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.43	0.495	4	3								2	2	2	1	61.752	61.075	2	0.0019514	53152	160511_QHF_FH_JSI11i_2	59.198	38.498			1.0913	1.1411	9.1093	5	1	Median	1.4247	1.2007	7.2006	2	0	Median	1.0242	1.2207	NaN	1	1	Median	1.0807	1.048	6.1395	2	0	Median	NaN	NaN	NaN	0	0	Median	286810000	143870000	142940000	79029000	42772000	36257000	63795000	30921000	32874000	143990000	70177000	73810000	0	0	0	59860	2567	56394	364879;364880;364881;364882;364883;364884;364885	492681;492682;492683;492684;492685	492685			5	
YSPTSPTYSPTSPK	1	Unmodified	1511.7144	0.71438925	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.361	32.757	2	0.00015244	29296	160511_QHF_FH_JSI11i_1	96.64	47.899			0.94558	0.95196	10.942	4	1	Median	1.0949	0.90174	NaN	1	1	Median	0.85877	1.0113	NaN	1	0	Median	1.0412	1.005	NaN	1	0	Median	0.77362	0.80175	NaN	1	0	Median	282860000	134100000	148770000	62571000	24251000	38319000	89167000	44246000	44920000	77508000	37381000	40127000	53616000	28217000	25399000	59861	1251	56395	364886;364887;364888;364889	492686;492687;492688;492689;492690;492691;492692;492693	492687			8	
YSPTSPTYSPTTPK	1	Unmodified	1525.73	0.73003931	1251	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									1	2	1	1	35.39	34.835	2	0.0014755	30483	160511_QHF_FH_JSI9i_1	76.655	61.389			0.85508	0.87888	20.333	5	3	Median	1.2013	0.97952	NaN	1	1	Median	0.68893	0.80994	35.073	2	2	Median	0.76186	0.7461	NaN	1	0	Median	0.85508	0.87888	NaN	1	0	Median	183080000	97164000	85919000	26872000	12560000	14312000	76604000	43780000	32824000	45254000	20772000	24482000	34352000	20052000	14300000	59862	1251	56396	364890;364891;364892;364893;364894	492694;492695;492696;492697	492697			4	
YSPTTSHVGA	0	Unmodified	1018.472	0.47197413	4592	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2	0		4								1	1	1	1	17.282	16.592	2	0.0036155	13523	160511_QHF_FH_JSI11i_2	56.27	37.464			0.92855	0.98421	17.757	4	0	Median	1.1787	1.0429	NaN	1	0	Median	0.92272	1.1096	NaN	1	0	Median	0.93442	0.92881	NaN	1	0	Median	0.68105	0.74151	NaN	1	0	Median	146900000	71333000	75566000	32739000	12608000	20131000	25596000	13599000	11997000	50728000	23874000	26855000	37835000	21252000	16583000	59863	4592	56397	364895;364896;364897;364898	492698;492699	492699			1	
YSQFINFPIYVWSSK	1	Unmodified	1877.9352	0.93522148	1057	P14625	HSP90B1	Endoplasmin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.71	5.73		6	8	7	2	1	2	1	11	5	8	9	16	97.496	91.918	2;3	1.5243E-116	82408	160511_QHF_FH_JSI9i_3	269.7	255.89			1.0284	1.0717	30.97	37	9	Median	1.0649	0.96055	10.322	5	0	Median	0.94363	1.0641	29.338	8	0	Median	1.2014	1.2027	50.809	9	2	Median	1.0286	1.0717	19.918	15	7	Median	78937000000	36977000000	41960000000	12171000000	5433000000	6738000000	16257000000	9147300000	7110100000	27278000000	11674000000	15604000000	23231000000	10723000000	12508000000	59864	1057	56398	364899;364900;364901;364902;364903;364904;364905;364906;364907;364908;364909;364910;364911;364912;364913;364914;364915;364916;364917;364918;364919;364920;364921;364922;364923;364924;364925;364926;364927;364928;364929;364930;364931;364932;364933;364934;364935;364936	492700;492701;492702;492703;492704;492705;492706;492707;492708;492709;492710;492711;492712;492713;492714;492715;492716;492717;492718;492719;492720;492721;492722;492723;492724;492725;492726;492727;492728;492729;492730;492731;492732;492733;492734;492735;492736;492737;492738;492739;492740;492741;492742;492743;492744;492745;492746;492747;492748;492749;492750;492751;492752;492753;492754;492755;492756	492712			57	
YSQICAK	1	Unmodified	868.41129	0.41128813	1878	P56381;Q5VTU8	ATP5E;ATP5EP2	ATP synthase subunit epsilon, mitochondrial;ATP synthase subunit epsilon-like protein, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	3.92	3	5					1			1	2	3	3	11.376	10.15	2	0.012077	7953	160511_QHF_FH_JSI12i_2	75.311	60.647			0.89383	0.91487	44.161	9	3	Median	0.92361	0.80302	NaN	1	0	Median	1.0196	1.2227	17.289	2	0	Median	0.98209	1.0014	15.289	3	0	Plateau	0.57618	0.61811	81.336	3	3	Median	1952100000	1035900000	916200000	105590000	67246000	38347000	555780000	274130000	281650000	693100000	357130000	335970000	597640000	337400000	260230000	59865	1878	56399	364937;364938;364939;364940;364941;364942;364943;364944;364945	492757;492758;492759;492760;492761;492762;492763;492764	492758			8	
YSQLVVETIR	0	Unmodified	1206.6608	0.66083754	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	6.11		4						5	5	4	3	3	4	57.709	50.237	2	7.4043E-09	27484	160513_QHF_FH_JSI11Kac_5	121.83	71.79			0.88625	0.90922	32.251	14	5	Median	1.107	0.94529	47.565	4	2	Median	0.74441	0.90635	28.921	3	0	Median	0.72581	0.71889	18.515	3	1	Median	0.94081	1.0394	27.993	4	2	Median	1053000000	613050000	439960000	214430000	105500000	108930000	270140000	157330000	112810000	289140000	181840000	107290000	279310000	168380000	110930000	59866	3834	56400	364946;364947;364948;364949;364950;364951;364952;364953;364954;364955;364956;364957;364958;364959	492765;492766;492767;492768;492769;492770;492771;492772;492773;492774;492775;492776;492777;492778;492779;492780;492781;492782;492783;492784;492785;492786	492772			22	
YSQLVVETIRR	0	Unmodified	1362.7619	0.76194857	3834	Q92522	H1FX	Histone H1x	yes	yes	0	0	0	1		By MS/MS			3	0			1								1			42.528	40.995	3	0.023366	34199	160511_QHF_FH_JSI10i_3	25.155	20.174			0.44993	0.53176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.44993	0.53176	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26473000	22408000	4065800	0	0	0	26473000	22408000	4065800	0	0	0	0	0	0	59867	3834	56401	364960	492787	492787			1	
YSQNIYIQNR	0	Unmodified	1297.6415	0.64149908	4330	Q99959	PKP2	Plakophilin-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By MS/MS	2	0		5								1	1	1	2	31.195	30.317	2	0.0024077	25553	160511_QHF_FH_JSI12i_2	63.216	51.368			1.3219	1.3193	13.627	3	1	Plateau	NaN	NaN	NaN	0	0	Median	1.1289	1.3835	NaN	1	0	Median	1.3219	1.3193	NaN	1	0	Median	0.95061	1.0709	NaN	1	1	Median	102090000	47338000	54757000	0	0	0	27328000	12712000	14616000	45295000	18592000	26703000	29472000	16035000	13437000	59868	4330	56402	364961;364962;364963;364964;364965	492788;492789;492790;492791	492789			4	
YSQSDLEQTK	1	Unmodified	1197.5513	0.55134667	2560	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		19.115	18.926	2	0.0001851	16212	160511_QHF_FH_JSI10i_1	93.477	63.81			9.7449	10.409	29.417	2	2	Median	NaN	NaN	NaN	0	0	Median	10.797	12.816	NaN	1	1	Median	8.7953	8.4542	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2853900000	186880000	2667000000	0	0	0	1730100000	100400000	1629700000	1123800000	86487000	1037300000	0	0	0	59869	2560	56403	364966;364967	492792;492793	492793			2	
YSQTGNYELAVALSR	0	Unmodified	1670.8264	0.82639932	1486	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	2	1	64.167	63.364	2	1.7773E-21	54485	160511_QHF_FH_JSI12i_2	176.91	161.02			1.3266	1.3927	20.402	4	3	Median	NaN	NaN	NaN	0	0	Median	1.6131	1.9622	NaN	1	1	Median	1.3266	1.3514	12.284	2	2	Median	1.1667	1.3159	NaN	1	0	Median	531400000	236880000	294510000	0	0	0	122500000	47869000	74628000	270950000	126780000	144160000	137950000	62232000	75720000	59870	1486	56404	364968;364969;364970;364971	492794;492795;492796;492797;492798	492795			5	
YSQVLANGLDNK	1	Unmodified	1320.6674	0.66737948	1993	P62269	RPS18	40S ribosomal protein S18	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.94	5.75	8	7	8			2	5	4		7	8	11	8	42.087	38.275	2	1.1569E-33	33155	160511_QHF_FH_JSI11i_2	240.1	217.36			0.94215	0.97669	116.02	34	32	Median	2.4058	1.9568	110.44	7	7	Median	1.0608	1.2306	124.51	8	8	Median	1.0896	1.0664	145.39	11	10	Median	0.64312	0.70252	79.808	8	7	Median	11547000000	5295600000	6251000000	2698100000	1062300000	1635800000	3069500000	1586400000	1483100000	3531300000	1504700000	2026600000	2247600000	1142200000	1105400000	59871	1993	56405	364972;364973;364974;364975;364976;364977;364978;364979;364980;364981;364982;364983;364984;364985;364986;364987;364988;364989;364990;364991;364992;364993;364994;364995;364996;364997;364998;364999;365000;365001;365002;365003;365004;365005	492799;492800;492801;492802;492803;492804;492805;492806;492807;492808;492809;492810;492811;492812;492813;492814;492815;492816;492817;492818;492819;492820;492821;492822;492823;492824;492825;492826;492827;492828;492829;492830;492831;492832;492833;492834;492835;492836;492837;492838;492839;492840;492841;492842	492831			44	
YSQVLGLGGR	0	Unmodified	1048.5665	0.56654322	1150	P18887	XRCC1	DNA repair protein XRCC1	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			40.945	39.979	2	0.010077	35171	160511_QHF_FH_JSI10i_2	48.157	36.747			0.54135	0.65717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.54135	0.65717	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	50964000	35882000	15082000	0	0	0	50964000	35882000	15082000	0	0	0	0	0	0	59872	1150	56406	365006	492843	492843			1	
YSQYQQAIYK	1	Unmodified	1290.6245	0.62445203	197	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.64	0.481	4	7								3	3	3	2	32.172	31.408	2	1.5529E-08	26980	160511_QHF_FH_JSI9i_2	117.89	98.536			0.92833	0.91545	27.118	8	3	Median	1.2576	1.0544	10.014	2	2	Median	0.70596	0.84454	1.4336	2	0	Median	1.1035	1.0615	40.267	2	0	Median	0.73319	0.79122	45.282	2	1	Median	1122400000	537200000	585200000	211960000	87704000	124260000	340310000	180480000	159830000	302480000	134310000	168170000	267640000	134700000	132940000	59873	197	56407	365007;365008;365009;365010;365011;365012;365013;365014;365015;365016;365017	492844;492845;492846;492847;492848;492849;492850;492851;492852;492853;492854;492855;492856	492852			13	
YSSAFTNR	0	Unmodified	944.43519	0.4351947	4641	Q9H0U3	MAGT1	Magnesium transporter protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							2	1	1	1	16.685	16.108	2	0.0057259	13370	160511_QHF_FH_JSI9i_2	64.757	38.649			1.0881	1.1129	17.56	5	0	Median	1.3113	1.0951	33.707	2	0	Median	0.9112	1.0883	NaN	1	0	Median	1.3382	1.2239	NaN	1	0	Median	1.0881	1.1129	NaN	1	0	Median	373940000	171990000	201950000	165020000	68682000	96336000	92082000	47701000	44380000	47184000	21181000	26002000	69660000	34430000	35231000	59874	4641	56408	365018;365019;365020;365021;365022	492857;492858;492859;492860;492861	492860			5	
YSSDVQEMILSSATADRIPIAVSGVR	0	Unmodified	2764.4065	0.40654369	3860	Q92616	GCN1L1	Translational activator GCN1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.67	0.471		2	4							2	2	1	1	100.46	100.37	3	8.0239E-21	89465	160511_QHF_FH_JSI11i_3	122.41	112.92			1.2726	1.3266	14.991	6	1	Median	1.7448	1.4858	21.313	2	0	Median	1.203	1.4413	6.4531	2	0	Median	1.2505	1.1657	NaN	1	0	Median	1.1911	1.1955	NaN	1	1	Median	742940000	343010000	399930000	179220000	67510000	111710000	405960000	205770000	200190000	101040000	46086000	54950000	56720000	23645000	33075000	59875	3860	56409	365023;365024;365025;365026;365027;365028	492862;492863;492864;492865;492866;492867;492868;492869;492870;492871;492872	492864			11	
YSSDYFQAPSDYR	0	Unmodified	1597.6685	0.66850169	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.56	0.497	4	5								3	2	2	2	52.051	51.203	2	6.995E-05	46373	160511_QHF_FH_JSI11i_1	103.21	101.83			0.98644	1.0053	18.069	9	1	Median	1.3673	1.1004	35.232	3	1	Median	0.8027	0.97651	4.1076	2	0	Median	1.0446	1.012	2.0048	2	0	Median	0.89324	0.95246	8.2782	2	0	Median	417450000	206060000	211390000	113970000	48482000	65485000	104120000	65472000	38643000	109620000	49280000	60345000	89742000	42826000	46915000	59876	2271	56410	365029;365030;365031;365032;365033;365034;365035;365036;365037	492873;492874;492875;492876;492877;492878;492879;492880;492881;492882;492883;492884;492885;492886;492887;492888;492889	492874			17	
YSSEVATESPLDFTK	1	Unmodified	1672.7832	0.7831971	3748	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	64.804	64.267	2	0.00024177	58368	160511_QHF_FH_JSI11i_1	84.169	63.391			0.39332	0.40209	38.53	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.31315	0.3062	NaN	1	0	Median	0.494	0.52802	NaN	1	1	Median	78840000	56700000	22141000	0	0	0	0	0	0	55954000	41900000	14054000	22886000	14800000	8086600	59877	3748	56411	365038;365039	492890;492891	492890			2	
YSSNLGNFNYEQR	0	Unmodified	1590.7063	0.70628418	4575	Q9BZZ5	API5	Apoptosis inhibitor 5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		46.368	45.865	2	0.012889	39454	160511_QHF_FH_JSI11i_2	45.359	38.08			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59878	4575	56412	365040	492892	492892			1	
YSSQDADEQDWEFQK	1	Unmodified	1874.7595	0.75950154	4581	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	48.928	48.427	2	1.5247E-06	43600	160511_QHF_FH_JSI10i_1	132.47	129.74			1.3602	1.4246	7.7173	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1396	1.3649	NaN	1	0	Median	1.6294	1.5855	NaN	1	0	Median	1.3602	1.4246	NaN	1	0	Median	148050000	62738000	85316000	0	0	0	54435000	24490000	29945000	34331000	13153000	21178000	59288000	25095000	34193000	59879	4581	56413	365041;365042;365043	492893;492894;492895;492896;492897;492898	492898			6	
YSSSGSPANSFHFK	1	Unmodified	1514.679	0.6790068	129	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	4.84			5						1	2	1	1	2	39.801	37.717	2;3	2.5853E-05	33017	160511_QHF_FH_JSI11i_3	106.54	101.45			0.74842	1.0451	27.351	6	1	Linear	1.9088	1.5508	16.833	2	1	Median	0.91024	1.1074	NaN	1	0	Median	0.90534	0.85558	NaN	1	0	Median	0.9344	0.94498	6.0456	2	0	Median	928090000	478520000	449570000	57694000	20532000	37162000	81729000	49738000	31991000	281890000	135720000	146160000	506780000	272530000	234250000	59880	129	56414	365044;365045;365046;365047;365048;365049	492899;492900;492901;492902;492903;492904;492905	492900			6	
YSSSSIPEPFGSR	0	Unmodified	1412.6572	0.65720872	3760	Q8WUF5	PPP1R13L	RelA-associated inhibitor	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.351	52.828	2	0.0038458	45730	160511_QHF_FH_JSI11i_2	63.32	47.439			0.70956	0.69661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.70956	0.69661	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	41558000	23271000	18287000	0	0	0	0	0	0	41558000	23271000	18287000	0	0	0	59881	3760	56415	365050	492906	492906			1	
YSTDVSVDEVK	1	Unmodified	1240.5823	0.58231244	762	P00367;P49448	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.14	5.94	4					3				1	2	2	2	40.499	36.249	2	5.4676E-13	32529	160511_QHF_FH_JSI11i_1	146.11	123.37			0.97106	0.95921	19.208	7	0	Median	0.86934	0.70351	NaN	1	0	Median	0.70616	0.83656	1.1517	2	0	Median	0.99879	0.98035	3.0828	2	0	Median	1.0722	1.1662	11.232	2	0	Median	2729400000	1592400000	1136900000	399820000	240070000	159750000	920370000	577510000	342860000	734890000	385650000	349240000	674280000	389200000	285080000	59882	762	56416	365051;365052;365053;365054;365055;365056;365057	492907;492908;492909;492910;492911;492912;492913;492914;492915;492916;492917;492918	492908			12	
YSTGLAGNLLGDLHYTTEGIPVLIVGHHILYGK	1	Unmodified	3520.8718	0.87183995	948	P0CG13	CHTF8	Chromosome transmission fidelity protein 8 homolog	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			95.707	89.986	5	6.2332E-22	51944	160513_QHF_FH_JSI10Kac_6	110.16	100.86			0.72109	0.86889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.72109	0.86889	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	292310000	180700000	111610000	0	0	0	292310000	180700000	111610000	0	0	0	0	0	0	59883	948	56417	365058	492919;492920	492920			2	
YSTIPKFGIEK	2	Acetyl (K)	1323.7075	0.70745338	225	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.613	63.916	2	0.011321	34062	160513_QHF_FH_JSI11Kac_5	63.283	51.793			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4479700	4479700	0	0	0	0	0	0	0	4479700	4479700	0	0	0	0	59884	225	56418	365059	492921	492921	121		1	
YSTKPDAVFAGAMPTMASVK	2	Oxidation (M)	2087.0067	0.0067482219	2796	Q2PZI1	DPY19L1	Probable C-mannosyltransferase DPY19L1	yes	yes	0	0	1	1				By MS/MS	3	0			1										1	58.8	58.538	3	7.3234E-05	50348	160511_QHF_FH_JSI12i_3	66.536	57.44			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59885	2796	56419	365060	492922	492922		2144	1	
YSTKPDAVFAGAMPTMASVK	2	Unmodified	2071.0118	0.0118336	2796	Q2PZI1	DPY19L1	Probable C-mannosyltransferase DPY19L1	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	70.528	70.23	3	0.00088059	60861	160511_QHF_FH_JSI12i_3	50.323	42.369			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59886	2796	56419	365061	492923	492923			1	
YSTLHTQSAEPPPPPEPARI	0	Unmodified	2187.096	0.096032235	3714	Q8TCZ2	CD99L2	CD99 antigen-like protein 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2								1	3	2	48.564	48.134	3	1.9622E-05	42486	160511_QHF_FH_JSI11i_3	65.25	57.27			0.92851	1.1525	17.932	3	1	Median	NaN	NaN	NaN	0	0	Median	0.92851	1.1525	NaN	1	0	Median	0.91729	0.87653	NaN	1	1	Median	1.1855	1.2285	NaN	1	0	Median	126420000	64048000	62374000	0	0	0	24498000	11005000	13493000	62614000	31707000	30907000	39309000	21336000	17974000	59887	3714	56420	365062;365063;365064;365065;365066;365067	492924;492925;492926;492927;492928;492929;492930;492931	492924			8	
YSTPHAFTFNTSSPSSEGSLSQR	0	Unmodified	2487.1302	0.13024549	801	P04049	RAF1	RAF proto-oncogene serine/threonine-protein kinase	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			55.619	54.06	3	1.0867E-14	45171	160511_QHF_FH_JSI10i_3	116.94	104.81			1.1548	1.1221	2.7484	2	0	Median	1.388	1.1441	NaN	1	0	Median	0.96068	1.1005	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92298000	43462000	48836000	45362000	19242000	26119000	46937000	24219000	22717000	0	0	0	0	0	0	59888	801	56421	365068;365069	492932;492933;492934;492935	492933			4	
YSTPVDIWSIGTIFAELATK	1	Unmodified	2211.1463	0.14633647	850	P06493	CDK1	Cyclin-dependent kinase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.14	6.81		9	3						9	4	6	5	6	102.96	99.439	2;3	3.1213E-177	50831	160513_QHF_FH_JSI12Kac_6	346.57	312.39			0.93111	0.96849	14.678	21	7	Median	1.1077	0.95825	13.781	4	0	Median	0.80698	0.96209	10.333	6	5	Median	0.99218	0.97913	8.243	5	0	Median	0.85275	0.93643	23.957	6	2	Median	2872900000	1500700000	1372300000	1006800000	486090000	520750000	1328000000	736850000	591170000	363690000	178990000	184700000	174390000	98752000	75634000	59889	850	56422	365070;365071;365072;365073;365074;365075;365076;365077;365078;365079;365080;365081;365082;365083;365084;365085;365086;365087;365088;365089;365090	492936;492937;492938;492939;492940;492941;492942;492943;492944;492945;492946;492947;492948;492949;492950;492951;492952;492953;492954;492955;492956;492957;492958;492959;492960;492961;492962;492963;492964;492965;492966;492967;492968;492969	492963			34	
YSTSGSSGLTTGK	1	Unmodified	1244.5885	0.58846046	2780	Q16891	IMMT	MICOS complex subunit MIC60	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5	5.54	4	3	1				3			4	3	2	2	19.702	16.731	2	1.7332E-07	14669	160511_QHF_FH_JSI12i_1	138.99	110.82			1.0216	1.0701	58.433	10	5	Median	2.3314	1.9263	73.366	3	3	Median	0.65841	0.77117	87.509	3	2	Median	1.0779	1.0578	9.98	2	0	Median	1.0071	1.0701	3.5038	2	0	Median	1886300000	943700000	942610000	579090000	283540000	295550000	445860000	242700000	203150000	390220000	211520000	178700000	471150000	205940000	265210000	59890	2780	56423	365091;365092;365093;365094;365095;365096;365097;365098;365099;365100;365101	492970;492971;492972;492973;492974;492975;492976;492977;492978;492979;492980;492981	492972			12	
YSTSLSWIHLLK	1	Unmodified	1446.7871	0.78710068	5019	Q9NUY8	TBC1D23	TBC1 domain family member 23	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.2	6.37			6						4	2	3	3	2	83.584	79.494	3	2.3184E-17	41781	160513_QHF_FH_JSI10Kac_6	146.36	136.82			1.0504	1.0029	19.989	9	2	Median	1.0295	0.87494	8.8075	2	0	Median	0.97165	1.1703	27.492	3	2	Median	1.2157	1.1457	18.827	2	0	Median	0.92518	0.94944	21.807	2	0	Median	1082500000	517390000	565130000	328990000	161360000	167640000	363750000	189300000	174440000	229640000	83279000	146360000	160150000	83455000	76695000	59891	5019	56424	365102;365103;365104;365105;365106;365107;365108;365109;365110;365111	492982;492983;492984;492985;492986;492987;492988;492989;492990;492991;492992;492993;492994;492995	492995			14	
YSTWEPEENILDAR	0	Unmodified	1721.7897	0.78967946	4851	Q9HC52	CBX8	Chromobox protein homolog 8	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	72.839	71.554	2	0.0033791	61737	160511_QHF_FH_JSI12i_2	56.783	42.092			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59892	4851	56425	365112	492996	492996			1	
YSVDIPLDK	1	Unmodified	1048.5441	0.54407645	1953	P61353	RPL27	60S ribosomal protein L27	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.93	6.17	4	3	1			2	2	2		2	5	4	3	62.453	57.248	2	2.4592E-06	50742	160511_QHF_FH_JSI9i_1	126.41	81.965			1.0029	0.97334	40.674	13	1	Median	1.3834	1.1659	2.8339	2	0	Median	0.73698	0.90637	56.923	5	1	Median	0.96417	0.9377	24.174	4	0	Median	1.2706	1.3725	53.256	2	0	Median	14528000000	6949200000	7578500000	2927500000	1129000000	1798500000	4141400000	2207700000	1933700000	3686600000	1783600000	1903000000	3772300000	1829000000	1943300000	59893	1953	56426	365113;365114;365115;365116;365117;365118;365119;365120;365121;365122;365123;365124;365125;365126	492997;492998;492999;493000;493001;493002;493003;493004;493005;493006;493007;493008;493009;493010;493011;493012;493013;493014;493015;493016	493012			20	
YSVFFQSLAVVEQEMKK	2	Unmodified	2032.0339	0.03394925	2598	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.7	6.13			2						4	1	2	2	1	95.792	90.2	3	1.8494E-24	49315	160513_QHF_FH_JSI10Kac_6	157.54	140.46			0.7358	0.83252	55.829	6	2	Median	1.0225	0.86917	NaN	1	0	Median	0.7358	0.86476	11.466	2	1	Median	1.3503	1.2554	108.5	2	1	Median	0.57727	0.61346	NaN	1	0	Median	1827100000	793260000	1033900000	123200000	75341000	47856000	625170000	357200000	267980000	905370000	263360000	642010000	173390000	97363000	76030000	59894	2598	56427	365127;365128;365129;365130;365131;365132	493017;493018;493019;493020;493021;493022;493023;493024;493025	493025			9	
YSVGIHNLLAYVK	1	Unmodified	1475.8136	0.81364979	942	P09914	IFIT1	Interferon-induced protein with tetratricopeptide repeats 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7	6			9						4	3	3	4	3	80.306	77.319	2;3	2.7115E-18	40161	160513_QHF_FH_JSI10Kac_6	146.5	132.07			0.80563	0.78206	24.889	13	2	Median	0.6703	0.55974	21.613	3	0	Plateau	0.71491	0.80067	18.723	3	0	Median	0.93693	0.88351	33.6	4	2	Median	0.81915	0.85705	11.334	3	0	Median	1299500000	716810000	582730000	281350000	162750000	118610000	351020000	202050000	148970000	303890000	154220000	149670000	363290000	197800000	165490000	59895	942	56428	365133;365134;365135;365136;365137;365138;365139;365140;365141;365142;365143;365144;365145	493026;493027;493028;493029;493030;493031;493032;493033;493034;493035;493036;493037;493038;493039;493040;493041;493042;493043;493044;493045;493046;493047	493047			22	
YSVHNAGISFSVK	1	Unmodified	1407.7147	0.71466402	1499	P40692	MLH1	DNA mismatch repair protein Mlh1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.33	6.13			8						4	2	4	4	2	52.101	48.258	2;3	6.3319E-05	41188	160511_QHF_FH_JSI12i_3	106.01	87.696			0.85767	0.85477	17.289	11	3	Median	1.0442	0.88321	2.8559	2	0	Median	0.67497	0.79598	4.7264	3	1	Median	0.98553	0.9529	24.146	4	2	Median	0.8683	0.89287	27.776	2	0	Median	392330000	206890000	185440000	77702000	30960000	46742000	106750000	65273000	41481000	154470000	77191000	77276000	53409000	33467000	19941000	59896	1499	56429	365146;365147;365148;365149;365150;365151;365152;365153;365154;365155;365156;365157	493048;493049;493050;493051;493052;493053;493054;493055;493056;493057;493058	493057			9	
YSVLIMAEK	1	Unmodified	1052.5576	0.55761802	5207	Q9P2B2	PTGFRN	Prostaglandin F2 receptor negative regulator	yes	yes	0	0	0	0		By MS/MS	By MS/MS		16	0									2		1	1		65.446	56.542	2	0.014238	30629	160513_QHF_FH_JSI11Kac_6	64.654	34.987			1.205	1.2834	105.2	2	2	Median	NaN	NaN	NaN	0	0	Median	0.52713	0.60997	NaN	1	1	Median	2.7545	2.7003	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	29500000	14378000	15123000	0	0	0	14288000	9479200	4808600	15213000	4898300	10314000	0	0	0	59897	5207	56430	365158;365159	493059;493060;493061	493060			3	
YSVLLPTYNER	0	Unmodified	1353.6929	0.69286595	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	61.118	59.975	2	0.00018193	51430	160511_QHF_FH_JSI12i_2	81.972	25.54			0.99158	0.95303	6.0166	2	0	Median	1.187	0.99445	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.82834	0.91333	NaN	1	0	Median	140420000	72678000	67742000	64354000	28127000	36228000	0	0	0	0	0	0	76066000	44552000	31515000	59898	445	56431	365160;365161	493062;493063;493064	493062			3	
YSVLLPTYNERENLPLIVWLLVK	1	Unmodified	2771.5626	0.56257405	445	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									6	1	2	1	2	99.347	91.197	3;4	1.9536E-48	54698	160513_QHF_FH_JSI10Kac_6	185.87	177			0.91964	0.99944	22.038	6	0	Median	0.93334	0.78983	NaN	1	0	Median	0.96798	1.1346	7	2	0	Median	1.3245	1.2465	NaN	1	0	Median	0.77699	0.82123	16.832	2	0	Median	1894000000	934500000	959500000	436700000	220160000	216540000	913010000	479840000	433170000	149660000	54264000	95396000	394640000	180240000	214400000	59899	445	56432	365162;365163;365164;365165;365166;365167	493065;493066;493067;493068;493069;493070;493071;493072	493069			8	
YSVLNNDDYFADVSPLR	0	Unmodified	1986.9323	0.93232095	2784	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	90.81	89.939	2	7.735E-08	80029	160511_QHF_FH_JSI10i_2	100.55	86.294			1.1259	1.2812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1259	1.2812	NaN	1	1	Median	9885000	5385500	4499500	0	0	0	0	0	0	0	0	0	9885000	5385500	4499500	59900	2784	56433	365168;365169	493073;493074	493074			2	
YSVLQQHAEANGVDGVDALDTASHTNK	1	Unmodified	2839.3373	0.33727815	4277	Q99523	SORT1	Sortilin	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		55.332	55.332	4	1.7464E-12	49053	160511_QHF_FH_JSI11i_3	79.382	72.806			1.4117	1.2925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4117	1.2925	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	39057000	13084000	25972000	0	0	0	0	0	0	39057000	13084000	25972000	0	0	0	59901	4277	56434	365170	493075	493075			1	
YSVQLLTPANLLAK	1	Unmodified	1529.8817	0.88172935	5496	Q9Y265	RUVBL1	RuvB-like 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.14	4.88	3	9	6						3	4	5	7	5	93.794	92.179	2;3	7.6494E-30	81355	160511_QHF_FH_JSI12i_2	189.13	166.49			1.1138	1.0581	37.825	21	3	Median	1.3344	0.92449	11.603	4	0	Linear	0.81114	0.96408	19.997	5	0	Median	1.2384	1.2361	25.03	7	3	Median	1.1138	1.1459	60.687	5	0	Median	1822200000	920890000	901340000	286720000	149520000	137200000	459780000	242680000	217100000	656410000	341600000	314810000	419320000	187080000	232240000	59902	5496	56435	365171;365172;365173;365174;365175;365176;365177;365178;365179;365180;365181;365182;365183;365184;365185;365186;365187;365188;365189;365190;365191	493076;493077;493078;493079;493080;493081;493082;493083;493084;493085;493086;493087;493088;493089;493090;493091;493092;493093;493094;493095;493096;493097;493098;493099;493100;493101;493102;493103;493104;493105;493106;493107;493108;493109;493110	493084			35	
YSVQTADHR	0	Unmodified	1075.5047	0.50467125	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.9	6.58	2	8	8					5	8	9	6	9	7	10.504	6.6804	2;3	1.234E-11	6260	160511_QHF_FH_JSI12i_3	164.96	134.77			1.0399	1.0779	11.795	30	1	Median	1.2755	1.0921	8.6106	9	0	Median	0.94274	1.1438	4.3388	6	1	Median	1.0298	1.019	16.302	8	0	Median	0.8324	0.92054	9.8058	7	0	Median	10596000000	4790300000	5806200000	1431600000	643190000	788360000	1373100000	731790000	641290000	4439700000	2000900000	2438800000	3352100000	1414400000	1937700000	59903	2751	56436	365192;365193;365194;365195;365196;365197;365198;365199;365200;365201;365202;365203;365204;365205;365206;365207;365208;365209;365210;365211;365212;365213;365214;365215;365216;365217;365218;365219;365220;365221;365222	493111;493112;493113;493114;493115;493116;493117;493118;493119;493120;493121;493122;493123;493124;493125;493126;493127;493128;493129;493130;493131;493132;493133;493134;493135;493136;493137;493138;493139;493140;493141;493142;493143;493144;493145;493146	493143			35	
YSVWIGGSILASLSTFQQMWISK	1	Oxidation (M)	2617.325	0.32504589	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Beta-actin-like protein 2	no	no	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14	2.33				2	1				4	2	1	3	1	100.71	92.001	3	2.6171E-29	50144	160513_QHF_FH_JSI12Kac_6	151.82	131.84			0.81148	0.82144	28.784	7	1	Median	0.99582	0.85777	6.1204	2	0	Median	0.76731	0.91707	NaN	1	0	Median	1.5007	1.475	49.035	3	1	Plateau	0.7338	0.78421	NaN	1	0	Median	639810000	343650000	296160000	340990000	175020000	165970000	155650000	94602000	61052000	46842000	20196000	26646000	96319000	53827000	42492000	59904	1916;2015;2062;2070;2865	56437	365223;365224;365225;365226;365227;365228;365229	493147;493148;493149;493150;493151;493152;493153;493154;493155;493156	493155		1585	10	
YSVWIGGSILASLSTFQQMWISK	1	Unmodified	2601.3301	0.33013127	2062;1916;2070;2015;2865	P60709;P63267;P62736;P63261;P68032;Q562R1	ACTB;ACTG2;ACTA2;ACTG1;ACTC1;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Beta-actin-like protein 2	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.4	2.23				20	6	1		1	54	20	37	24	1	108.07	100.47	2;3	2.1639E-245	56916	160513_QHF_FH_JSI10Kac_6	367.23	316.33			0.96745	0.97851	23.178	53	23	Median	1.0877	0.92464	14.169	11	5	Median	0.9632	1.1204	17.397	25	9	Median	0.96409	0.92382	28.751	16	8	Median	0.73279	0.78661	NaN	1	1	Median	2235600000	1111900000	1123700000	347770000	170130000	177640000	1735800000	874030000	861780000	150410000	66757000	83658000	1606100	973750	632380	59905	1916;2015;2062;2070;2865	56437	365230;365231;365232;365233;365234;365235;365236;365237;365238;365239;365240;365241;365242;365243;365244;365245;365246;365247;365248;365249;365250;365251;365252;365253;365254;365255;365256;365257;365258;365259;365260;365261;365262;365263;365264;365265;365266;365267;365268;365269;365270;365271;365272;365273;365274;365275;365276;365277;365278;365279;365280;365281;365282;365283;365284;365285;365286;365287;365288;365289;365290;365291;365292;365293;365294;365295;365296;365297;365298;365299;365300;365301;365302;365303;365304;365305;365306;365307;365308;365309;365310;365311	493157;493158;493159;493160;493161;493162;493163;493164;493165;493166;493167;493168;493169;493170;493171;493172;493173;493174;493175;493176;493177;493178;493179;493180;493181;493182;493183;493184;493185;493186;493187;493188;493189;493190;493191;493192;493193;493194;493195;493196;493197;493198;493199;493200;493201;493202;493203;493204;493205;493206;493207;493208;493209;493210;493211;493212;493213;493214;493215;493216;493217;493218;493219;493220;493221;493222;493223;493224;493225;493226;493227;493228;493229;493230;493231;493232;493233;493234;493235;493236;493237;493238;493239;493240;493241;493242;493243;493244;493245;493246;493247;493248;493249;493250;493251;493252;493253;493254;493255;493256;493257	493238			100	
YSYATLITYAINSSPAK	1	Unmodified	1861.9462	0.9461801	5184	Q9P0K8	FOXJ2	Forkhead box protein J2	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	88.4	80.82	2;3	9.0515E-85	44178	160513_QHF_FH_JSI9Kac_6	214.88	191.13			0.7017	0.79403	27.587	2	1	Median	NaN	NaN	NaN	0	0	Median	0.80434	0.96506	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61216	0.65331	NaN	1	1	Median	60590000	36937000	23653000	0	0	0	32335000	19186000	13149000	0	0	0	28255000	17750000	10504000	59906	5184	56438	365312;365313;365314	493258;493259;493260	493258			3	
YSYQYTVANK	1	Unmodified	1235.5823	0.58225287	3953	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.88	6.11		3					2	3			3	2	3	36.271	29.799	2	1.4392E-05	26314	160511_QHF_FH_JSI10i_2	101.11	96.322			0.82003	0.91924	15.991	8	0	Median	NaN	NaN	NaN	0	0	Median	0.80244	0.93946	15.388	3	0	Median	1.0229	1.0119	30.071	2	0	Median	0.80513	0.89947	10.186	3	0	Median	377070000	222540000	154530000	0	0	0	82788000	56392000	26397000	167600000	91154000	76449000	126680000	74993000	51688000	59907	3953	56439	365315;365316;365317;365318;365319;365320;365321;365322	493261;493262;493263;493264;493265;493266	493265			5	
YSYYDESQGEIYR	0	Unmodified	1671.7053	0.70528113	5556	Q9Y316	MEMO1	Protein MEMO1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	45.755	45.261	2	9.0769E-05	40772	160511_QHF_FH_JSI10i_1	96.171	87.685			0.80229	0.81892	7.2781	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.77019	0.93725	NaN	1	0	Median	0.90069	0.83568	NaN	1	0	Median	0.80229	0.81892	NaN	1	0	Median	217710000	120400000	97312000	0	0	0	65688000	35436000	30252000	68297000	38722000	29575000	83728000	46243000	37485000	59908	5556	56440	365323;365324;365325	493267;493268;493269;493270	493270			4	
YTAAVPYR	0	Unmodified	939.48142	0.48141661	5242	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	27.879	27.021	2	0.0042007	22697	160511_QHF_FH_JSI11i_2	75.854	64.981			0.82747	0.92275	0.80991	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.74558	0.92302	NaN	1	0	Median	0.90833	0.92275	NaN	1	0	Median	0.82747	0.93592	NaN	1	0	Median	374530000	196360000	178170000	0	0	0	101670000	49637000	52036000	180640000	98332000	82304000	92223000	48393000	43830000	59909	5242	56441	365326;365327;365328	493271;493272;493273;493274;493275	493274			5	
YTAGPQPLNTFYK	1	Unmodified	1498.7456	0.7456298	125	O00400	SLC33A1	Acetyl-coenzyme A transporter 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		5								2	1	1	1	58.163	57.23	2	1.9081E-07	50294	160511_QHF_FH_JSI9i_2	99.283	83.711			1.0612	1.0171	19.019	4	2	Median	1.2475	1.0927	NaN	1	1	Median	1.1897	1.4084	NaN	1	1	Median	0.94657	0.94682	NaN	1	0	Median	0.81832	0.93565	NaN	1	0	Median	115630000	60872000	54758000	18479000	5725100	12754000	15731000	6010400	9720400	45658000	26778000	18881000	35761000	22359000	13402000	59910	125	56442	365329;365330;365331;365332;365333	493276;493277;493278;493279;493280;493281	493279			6	
YTALVTLTTQHVK	1	Unmodified	1473.8191	0.81912909	5458	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			57.348	48.864	2	0.038121	26907	160513_QHF_FH_JSI10Kac_6	42.475	19.834			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59911	5458	56443	365334	493282	493282			1	
YTAQLLSGLDYLHSNSVVHK	1	Unmodified	2244.1539	0.15388147	5217	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	0				By MS/MS	3	0			1										1	75.669	75.385	4	0.0032729	65464	160511_QHF_FH_JSI12i_3	43.497	35.408			1.1175	1.143	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1175	1.143	NaN	1	1	Median	67621000	34438000	33183000	0	0	0	0	0	0	0	0	0	67621000	34438000	33183000	59912	5217	56444	365335	493283	493283			1	
YTAQVDAEEK	1	Unmodified	1152.5299	0.52988294	589	O75947	ATP5H	ATP synthase subunit d, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.44	5.87	4	1				4				2	2	3	2	18.795	13.582	2	1.8913E-12	13150	160511_QHF_FH_JSI10i_1	155.11	145.33			0.90183	0.93093	14.05	8	0	Median	0.99591	0.78979	5.6553	2	0	Median	0.86272	1.0109	4.0263	2	0	Median	0.99571	0.97688	14.077	2	0	Median	0.79529	0.85885	18.662	2	0	Median	3959000000	2068400000	1890600000	1035000000	502370000	532610000	1148800000	612490000	536350000	886780000	503980000	382810000	888410000	449560000	438850000	59913	589	56445	365336;365337;365338;365339;365340;365341;365342;365343;365344	493284;493285;493286;493287;493288;493289;493290;493291;493292;493293;493294;493295;493296	493289			13	
YTAVSSFIFLR	0	Unmodified	1302.6972	0.69722304	2550	Q14644	RASA3	Ras GTPase-activating protein 3	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			83.674	78.049	2	0.024605	43475	160513_QHF_FH_JSI10Kac_6	54.539	38.162			0.76667	0.87692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76667	0.87692	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	59771000	32135000	27636000	0	0	0	59771000	32135000	27636000	0	0	0	0	0	0	59914	2550	56446	365345	493297	493297			1	
YTCHVQHEGLPK	1	Unmodified	1467.6929	0.69288272	788;967;1352;1353	P10316;P01892;P01891;P30453;P30457;P30459;P16190;P10314;P18462;P30480;P30460;P18463;P30462;P01889;Q29718;Q31610;P30486;P03989;Q04826;P30488;P30487;P30485;P30483;P30461	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-69 alpha chain;HLA class I histocompatibility antigen, A-2 alpha chain;HLA class I histocompatibility antigen, A-68 alpha chain;HLA class I histocompatibility antigen, A-34 alpha chain;HLA class I histocompatibility antigen, A-66 alpha chain;HLA class I histocompatibility antigen, A-74 alpha chain;HLA class I histocompatibility antigen, A-33 alpha chain;HLA class I histocompatibility antigen, A-32 alpha chain;HLA class I histocompatibility antigen, A-25 alpha chain;HLA class I histocompatibility antigen, B-42 alpha chain;HLA class I histocompatibility antigen, B-8 alpha chain;HLA class I histocompatibility antigen, B-37 alpha chain;HLA class I histocompatibility antigen, B-14 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, B-82 alpha chain;HLA class I histocompatibility antigen, B-81 alpha chain;HLA class I histocompatibility antigen, B-48 alpha chain;HLA class I histocompatibility antigen, B-27 alpha chain;HLA class I histocompatibility antigen, B-40 alpha chain;HLA class I histocompatibility antigen, B-50 alpha chain;HLA class I histocompatibility antigen, B-49 alpha chain;HLA class I histocompatibility antigen, B-47 alpha chain;HLA class I histocompatibility antigen, B-45 alpha chain;HLA class I histocompatibility antigen, B-13 alpha chain	no	no	0	0	0	0				By MS/MS	3	0			2										2	16.246	16.297	3;4	0.00013335	13051	160511_QHF_FH_JSI12i_3	80.371	76.269			2.0804	2.1068	77.551	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0804	2.1068	77.551	2	2	Median	245910000	94337000	151570000	0	0	0	0	0	0	0	0	0	245910000	94337000	151570000	59915	967;788;1352;1353	56447	365346;365347	493298;493299	493298			2	
YTCSFCGK	1	Unmodified	1021.3997	0.39973717	1956	P61513;A6NKH3	RPL37A;RPL37AP8	60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein	yes	no	0	0	0	0	By MS/MS		By MS/MS		2	0		2								1		1		19.601	19.008	2	0.010658	16041	160511_QHF_FH_JSI9i_2	63.48	46.553			1.0412	0.97818	36.47	2	1	Median	1.4298	1.2659	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.75823	0.75582	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	70072000	43837000	26235000	16199000	6368700	9829900	0	0	0	53873000	37468000	16405000	0	0	0	59916	1956	56448	365348;365349	493300;493301	493300			2	
YTDQGGEEEEDYESEEQLQHR	0	Unmodified	2570.0317	0.031713237	493	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	33.76	33.158	3	2.881E-29	29484	160511_QHF_FH_JSI10i_1	180.63	180.63			1.0566	1.0689	7.876	4	0	Median	1.5327	1.2456	NaN	1	0	Median	0.91128	1.0606	NaN	1	0	Median	1.0632	1.0572	NaN	1	0	Median	1.0501	1.0773	NaN	1	0	Median	437390000	212770000	224620000	68276000	28585000	39691000	137350000	73042000	64308000	133660000	63581000	70077000	98111000	47565000	50546000	59917	493	56449	365350;365351;365352;365353	493302;493303;493304;493305;493306;493307;493308	493305			7	
YTDVSTR	0	Unmodified	840.39775	0.39774656	5557	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	2										1		1	7.2812	6.9865	2	0.033819	4866	160511_QHF_FH_JSI12i_1	51.787	22.449			1.0783	1.1894	43.309	2	2	Median	NaN	NaN	NaN	0	0	Median	1.371	1.6155	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.84806	0.87563	NaN	1	1	Median	290410000	94369000	196040000	0	0	0	172330000	49000000	123330000	0	0	0	118080000	45369000	72713000	59918	5557	56450	365354;365355	493309;493310	493309			2	
YTDYFVIVSGTSTR	0	Unmodified	1607.7831	0.78313752	4044	Q96EH3	MALSU1	Mitochondrial assembly of ribosomal large subunit protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.4	6		2						1	5	1	2	2	3	77.311	68.507	2	6.0937E-24	37190	160513_QHF_FH_JSI11Kac_6	155.15	107.89			0.8539	0.96625	32.238	5	2	Median	1.2862	1.118	NaN	1	0	Median	0.5941	0.70263	45.055	2	1	Median	1.1561	1.1061	NaN	1	0	Median	0.8539	0.92771	NaN	1	1	Median	147950000	77823000	70124000	29919000	11978000	17941000	74396000	41639000	32757000	27511000	14183000	13328000	16121000	10023000	6098300	59919	4044	56451	365356;365357;365358;365359;365360;365361;365362;365363	493311;493312;493313;493314;493315;493316;493317;493318;493319;493320;493321	493312			11	
YTEGVQSLNWTK	1	Unmodified	1424.6936	0.69359423	5658	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.85	0.662	4	7	2							5	3	3	2	52.345	51.455	2	9.5569E-32	46309	160511_QHF_FH_JSI10i_1	194.17	171.43			1.024	0.94163	19.937	12	9	Median	1.1012	0.91029	16.726	4	4	Median	0.82284	0.94845	16.291	3	2	Median	0.89234	0.9022	26.609	3	2	Median	1.189	1.2901	12.02	2	1	Median	2670400000	1307100000	1363200000	539740000	238980000	300760000	750520000	401230000	349290000	965040000	472290000	492750000	415050000	194640000	220410000	59920	5658	56452	365364;365365;365366;365367;365368;365369;365370;365371;365372;365373;365374;365375;365376	493322;493323;493324;493325;493326;493327;493328;493329;493330;493331;493332;493333;493334;493335	493325			14	
YTEHSTVGLAQQWDQLDQLGMR	0	Unmodified	2575.2125	0.21253533	2470	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	83.792	82.943	3	3.7888E-06	72965	160511_QHF_FH_JSI11i_2	85.231	77.698			0.67429	0.7175	33.361	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.91156	0.90839	NaN	1	1	Median	0.49878	0.56673	NaN	1	1	Median	41027000	23813000	17214000	0	0	0	0	0	0	30615000	16301000	14314000	10412000	7511600	2900100	59921	2470	56453	365377;365378	493336;493337	493337			2	
YTEITATYFQGVR	0	Unmodified	1547.762	0.76200815	1435	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									3	1		2		70.967	62.345	2	0.00050519	33705	160513_QHF_FH_JSI11Kac_6	109.42	85.432			0.91318	0.7956	NaN	1	1	Median	0.91318	0.7956	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	9599400	6332300	3267000	9599400	6332300	3267000	0	0	0	0	0	0	0	0	0	59922	1435	56454	365379;365380;365381	493338;493339;493340	493338			3	
YTELEYIHALTLLHR	0	Unmodified	1870.9941	0.99413335	3962	Q96A65	EXOC4	Exocyst complex component 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									3	1		1	1	81.503	72.373	4	0.00075292	39326	160513_QHF_FH_JSI9Kac_6	58.079	41.549			1.244	1.0425	26.377	3	0	Median	1.244	1.0425	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4736	1.4405	NaN	1	0	Median	0.81466	0.85418	NaN	1	0	Median	209500000	95105000	114390000	137170000	59076000	78092000	0	0	0	40040000	17590000	22450000	32288000	18440000	13848000	59923	3962	56455	365382;365383;365384	493341;493342;493343;493344;493345	493342			4	
YTEMDYAR	0	Unmodified	1047.4331	0.43314579	5365	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	21.358	20.855	2	0.013305	18287	160511_QHF_FH_JSI12i_1	51.63	36.249			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59924	5365	56456	365385	493346	493346			1	
YTEQITNEK	1	Unmodified	1124.535	0.53496832	2756	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	15.309	15.025	2	1.5477E-05	12416	160511_QHF_FH_JSI11i_1	122.28	92.096			1.7659	1.7834	32.498	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.3207	2.2441	NaN	1	1	Median	1.3438	1.4173	NaN	1	1	Median	436110000	170400000	265720000	0	0	0	0	0	0	216480000	62936000	153540000	219630000	107460000	112170000	59925	2756	56457	365386;365387	493347;493348	493347			2	
YTEVLKTHGLLV	1	Acetyl (K)	1413.7868	0.78676633	1497	P40429	RPL13A	60S ribosomal protein L13a	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15.3	0.471								2	1		1	2		80.094	70.004	2	2.13E-15	37159	160513_QHF_FH_JSI11Kac_5	138.25	127.42			0.32097	0.31562	123.88	3	0	Median	NaN	NaN	NaN	0	0	Median	1.6219	1.9089	NaN	1	0	Median	0.24362	0.23678	40.648	2	0	Median	NaN	NaN	NaN	0	0	Median	170810000	137680000	33132000	0	0	0	10693000	3418400	7274200	160120000	134260000	25858000	0	0	0	59926	1497	56458	365388;365389;365390	493349;493350	493350	1515		2	
YTFAAHMDGTYK	1	Unmodified	1403.618	0.61798644	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.69	6.58		8	8						10	7	7	6	6	44.13	40.233	2;3	2.9266E-08	21833	160513_QHF_FH_JSI11Kac_6	123.79	106.56			1.0137	0.99805	22.527	25	2	Median	0.99829	0.85671	14.2	6	0	Median	0.83997	1.0166	25.492	7	2	Median	0.99086	0.96744	12.353	6	0	Median	1.1827	1.3029	17.008	6	0	Median	5828600000	2777200000	3051500000	666780000	311010000	355770000	1026000000	580960000	445030000	2118100000	1016900000	1101100000	2017800000	868240000	1149600000	59927	2655	56459	365391;365392;365393;365394;365395;365396;365397;365398;365399;365400;365401;365402;365403;365404;365405;365406;365407;365408;365409;365410;365411;365412;365413;365414;365415;365416	493351;493352;493353;493354;493355;493356;493357;493358;493359;493360;493361;493362;493363;493364;493365;493366;493367;493368;493369;493370;493371;493372;493373;493374;493375;493376;493377;493378;493379;493380;493381;493382;493383;493384;493385;493386;493387;493388;493389;493390;493391;493392;493393;493394;493395;493396;493397;493398;493399;493400;493401;493402;493403;493404	493368			52	
YTFAAHMDGTYK	1	Oxidation (M)	1419.6129	0.61290107	2655	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			1						4	1	1	1	2	34.156	26.942	2;3	0.00033557	22512	160511_QHF_FH_JSI12i_3	79.07	69.117			1.0463	0.99528	19.865	5	0	Median	1.1649	0.99528	NaN	1	0	Median	0.77734	0.92713	NaN	1	0	Median	0.93571	0.92476	NaN	1	0	Median	1.243	1.3037	18.16	2	0	Median	93069000	40555000	52514000	19434000	8648900	10785000	19523000	10847000	8675500	12964000	6142000	6821900	41148000	14917000	26231000	59928	2655	56459	365417;365418;365419;365420;365421	493405;493406;493407;493408;493409;493410	493408		2074	6	
YTFAPSVSLNK	1	Unmodified	1225.6343	0.63428844	4937	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		58.616	58.113	2	0.023318	50439	160511_QHF_FH_JSI11i_2	48.785	38.083			0.89337	0.9023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.89337	0.9023	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	70282000	37488000	32794000	0	0	0	0	0	0	70282000	37488000	32794000	0	0	0	59929	4937	56460	365422	493411	493411			1	
YTFEEIQQETDIPER	0	Unmodified	1896.8741	0.87413737	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				67.811	66.817	2	1.3046E-07	59400	160511_QHF_FH_JSI9i_1	94.725	81.93			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59930	2455	56461	365423	493412	493412			1	
YTFHGDPHATFAAFFGGSNPFEIFFGR	0	Unmodified	3036.3984	0.39836227	5269	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									3	2	1			97.989	89.993	3;4	1.5084E-28	51065	160513_QHF_FH_JSI9Kac_6	128.52	108.99			0.69728	0.8106	24.145	3	1	Plateau	1.1212	0.95723	31.332	2	0	Median	0.67826	0.8106	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1161200000	758580000	402590000	499310000	240850000	258460000	661850000	517730000	144130000	0	0	0	0	0	0	59931	5269	56462	365424;365425;365426	493413;493414;493415	493413			3	
YTFPAEHR	0	Unmodified	1019.4825	0.48247924	5536	Q9Y2T3	GDA	Guanine deaminase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.88	5.17		7	7						3	3	4	4	6	22.037	20.454	2;3	0.00018357	17144	160511_QHF_FH_JSI11i_3	121.99	95.88			1.0787	1.0011	17.054	15	4	Median	1.15	0.97518	5.7456	3	0	Plateau	0.72941	0.90529	18.798	3	0	Plateau	0.99241	0.98199	11.775	4	1	Median	1.1595	1.1969	22.155	5	3	Median	2483900000	1256200000	1227600000	225710000	100120000	125590000	289460000	168440000	121020000	735140000	366450000	368690000	1233600000	621230000	612350000	59932	5536	56463	365427;365428;365429;365430;365431;365432;365433;365434;365435;365436;365437;365438;365439;365440;365441;365442;365443	493416;493417;493418;493419;493420;493421;493422;493423;493424;493425;493426;493427;493428;493429;493430;493431;493432;493433;493434;493435	493416			19	
YTGAGLSGR	0	Unmodified	880.44028	0.44028008	2226	Q05048	CSTF1	Cleavage stimulation factor subunit 1	yes	yes	0	0	0	0			By matching	By MS/MS	3	0			2									1	1	12.904	12.945	2	0.0039183	10056	160511_QHF_FH_JSI12i_3	58.23	38.383			1.7247	1.6893	35.147	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3953	1.3175	NaN	1	0	Median	2.1318	2.1659	NaN	1	0	Median	172640000	69450000	103190000	0	0	0	0	0	0	76181000	28863000	47318000	96458000	40587000	55871000	59933	2226	56464	365444;365445	493436	493436			1	
YTGASLQGATQLNNK	1	Unmodified	1564.7845	0.7845345	284	O15379	HDAC3	Histone deacetylase 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		37.887	37.444	2	3.883E-09	32007	160511_QHF_FH_JSI11i_2	101.95	76.568			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59934	284	56465	365446	493437	493437			1	
YTGEDFDEDLR	0	Unmodified	1358.5626	0.56263964	2517	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	yes	yes	0	0	0	0		By matching	By MS/MS	By MS/MS	1	0	3										1	1	1	45.846	45.352	2	5.7198E-05	41032	160511_QHF_FH_JSI11i_1	94.309	90.738			0.93038	1.0045	10.972	3	0	Median	NaN	NaN	NaN	0	0	Median	0.93038	1.0966	NaN	1	0	Median	1.0165	1.0045	NaN	1	0	Median	0.84208	0.88177	NaN	1	0	Median	598570000	310340000	288240000	0	0	0	172410000	90164000	82244000	228340000	115310000	113030000	197830000	104870000	92961000	59935	2517	56466	365447;365448;365449	493438;493439;493440	493438			3	
YTGNPTK	1	Unmodified	779.38137	0.38136821	5300	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	yes	yes	0	0	0	0			By MS/MS		14	0							1					1		6.445	-1.1577	2	0.036084	2351	160513_QHF_FH_JSI11Kac_4	58.917	41.99			1.1558	1.126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1558	1.126	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	11059000	4870400	6188400	0	0	0	0	0	0	11059000	4870400	6188400	0	0	0	59936	5300	56467	365450	493441	493441			1	
YTGYGNAAGLLAAR	0	Unmodified	1396.7099	0.709913	4908;5040	Q9NPQ8;Q9NVN3	RIC8A;RIC8B	Synembryn-A;Synembryn-B	no	no	0	0	0	0		By MS/MS			3	0			1								1			57.549	56.008	2	0.055934	46741	160511_QHF_FH_JSI10i_3	43.77	33.246			0.72129	0.82423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.72129	0.82423	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38723000	21715000	17007000	0	0	0	38723000	21715000	17007000	0	0	0	0	0	0	59937	4908;5040	56468	365451	493442	493442			1	
YTHAANTVVYSSNK	1	Unmodified	1553.7474	0.74742071	3159	Q6UXN9	WDR82	WD repeat-containing protein 82	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.83	5.01		6	9						3	4	6	5	3	17.772	16.146	2;3	6.6008E-12	13053	160511_QHF_FH_JSI11i_3	200.82	157.51			1.0421	0.90232	58.973	17	12	Median	1.065	0.89813	35.229	4	1	Median	0.75729	0.92109	45.384	6	4	Median	1.0854	1.0185	87.744	4	4	Median	1.8521	1.8993	93.204	3	3	Plateau	1326600000	611900000	714690000	104950000	45550000	59405000	175740000	96137000	79602000	610440000	281080000	329370000	435450000	189130000	246320000	59938	3159	56469	365452;365453;365454;365455;365456;365457;365458;365459;365460;365461;365462;365463;365464;365465;365466;365467;365468;365469	493443;493444;493445;493446;493447;493448;493449;493450;493451;493452;493453;493454;493455;493456;493457;493458;493459;493460;493461	493443			18	
YTHKLAMER	1	Acetyl (K)	1189.5914	0.59137776	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	28.882	20.314	3	0.0026916	11860	160513_QHF_FH_JSI10Kac_6	57.836	44.483			1.0354	1.1526	34.547	4	0	Median	2.065	1.7639	NaN	1	0	Median	1.0384	1.2018	NaN	1	0	Median	0.77369	0.75992	NaN	1	0	Median	1.0325	1.1055	NaN	1	0	Median	37430000	18074000	19355000	4801500	2050000	2751600	13792000	6221500	7570800	11342000	5268600	6073500	7493500	4534300	2959200	59939	3709	56470	365470;365471;365472;365473	493462;493463;493464;493465	493465	2916		4	
YTHLVDQDTTSFDSAWGQESAQNTK	1	Unmodified	2828.2525	0.25254547	1847	P55081	MFAP1	Microfibrillar-associated protein 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		2	2								1	1	2	59.66	59.282	3	6.9013E-35	50984	160511_QHF_FH_JSI12i_3	176.1	174.44			1.0474	0.979	29.205	3	0	Median	NaN	NaN	NaN	0	0	Median	1.1559	1.4099	NaN	1	0	Median	1.0474	0.979	NaN	1	0	Median	0.78273	0.79138	NaN	1	0	Median	216970000	93666000	123310000	0	0	0	35334000	19742000	15592000	96618000	32599000	64019000	85020000	41325000	43695000	59940	1847	56471	365474;365475;365476;365477	493466;493467;493468;493469;493470;493471;493472;493473;493474;493475	493475			10	
YTHQFLQK	1	Unmodified	1063.5451	0.5450795	2547	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			5							2	1	1	1	18.918	18.216	2;3	0.00068869	15092	160511_QHF_FH_JSI10i_3	81.296	67.919			1.2404	1.0165	73.97	5	5	Median	0.91989	0.74234	44.452	2	2	Median	0.32615	0.37991	NaN	1	1	Median	2.4247	2.1881	NaN	1	1	Median	1.679	1.6921	NaN	1	1	Median	253940000	129630000	124310000	73595000	34606000	38989000	64368000	51669000	12699000	33580000	5274800	28305000	82398000	38083000	44316000	59941	2547	56472	365478;365479;365480;365481;365482	493476;493477;493478;493479;493480	493477			5	
YTHSFPEALQK	1	Unmodified	1319.651	0.65100113	2832	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	34.019	33.583	2;3	0.00029658	28047	160511_QHF_FH_JSI12i_3	89.886	68.438			1.6794	1.6039	73.379	6	2	Median	2.3821	2.0264	NaN	1	0	Median	2.2355	2.7826	NaN	1	0	Median	2.0896	2.0556	117.82	2	0	Median	0.8967	0.91944	45.616	2	2	Median	539140000	188870000	350280000	55125000	18347000	36778000	175190000	53684000	121500000	207710000	69401000	138310000	101120000	47434000	53686000	59942	2832	56473	365483;365484;365485;365486;365487;365488;365489	493481;493482;493483;493484;493485;493486	493484			6	
YTIENPR	0	Unmodified	891.44503	0.4450311	3213	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	20.276	19.64	2	0.0041237	16088	160511_QHF_FH_JSI11i_2	100.07	73.957			1.0151	1.0362	8.238	5	0	Median	1.2091	1.0362	NaN	1	0	Median	0.80806	1.0053	NaN	1	0	Median	1.1046	1.142	NaN	1	0	Median	0.97189	1.0255	13.034	2	0	Median	1768500000	886490000	881980000	339770000	136660000	203110000	396790000	237770000	159020000	604120000	312830000	291290000	427790000	199230000	228560000	59943	3213	56474	365490;365491;365492;365493;365494	493487;493488;493489;493490;493491;493492;493493	493491			7	
YTIGLGQAK	1	Unmodified	949.52328	0.52328142	2170	Q01581	HMGCS1	Hydroxymethylglutaryl-CoA synthase, cytoplasmic	yes	yes	0	0	0	0		By MS/MS			2	0		1									1			37.343	36.379	2	0.018171	31925	160511_QHF_FH_JSI10i_2	51.854	31.572			0.76825	0.92112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.76825	0.92112	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	74749000	24785000	49964000	0	0	0	74749000	24785000	49964000	0	0	0	0	0	0	59944	2170	56475	365495	493494	493494			1	
YTIHSQLEHLQSK	1	Unmodified	1582.8104	0.81035532	4502	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.92	3.5		1	11						1	3	2	5	3	33.477	32.783	2;3;4	5.8117E-07	28117	160511_QHF_FH_JSI11i_3	93.258	84.069			1.3444	1.1319	30.451	9	3	Plateau	1.8316	1.4843	30.299	3	2	Plateau	1.1737	1.356	6.9327	2	0	Median	1.5045	1.3974	26.545	2	1	Median	1.1093	1.1189	26.596	2	0	Median	748060000	341570000	406490000	79376000	20527000	58850000	91503000	40731000	50771000	194620000	102790000	91825000	382560000	177520000	205040000	59945	4502	56476	365496;365497;365498;365499;365500;365501;365502;365503;365504;365505;365506;365507;365508	493495;493496;493497;493498;493499;493500;493501;493502;493503;493504;493505;493506;493507;493508	493499			14	
YTIIIPENLKPQMK	2	Unmodified	1686.9379	0.93786402	1194	P21399	ACO1	Cytoplasmic aconitate hydratase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.86	0.35		1	6							1	1	2	3	72.201	71.928	2;3	8.1738E-09	62285	160511_QHF_FH_JSI12i_3	104.82	95.391			0.8601	0.82497	17.065	5	5	Median	NaN	NaN	NaN	0	0	Median	0.52424	0.65201	NaN	1	1	Median	0.92891	0.87294	7.9944	2	2	Median	0.84534	0.83287	22.425	2	2	Median	1153700000	606170000	547580000	0	0	0	216840000	146980000	69861000	332230000	166510000	165720000	604670000	292670000	312000000	59946	1194	56477	365509;365510;365511;365512;365513;365514;365515	493509;493510;493511;493512;493513;493514;493515	493515			7	
YTIIPLNK	1	Unmodified	960.56442	0.56441796	679	O95347	SMC2	Structural maintenance of chromosomes protein 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.75	0.661	3	4	1							2	2	2	2	56.475	55.626	2	0.00045585	47693	160511_QHF_FH_JSI12i_2	107.67	92.041			1.1063	1.1087	20.519	8	2	Median	1.7378	1.4412	38.908	2	1	Median	0.97415	1.1779	21.529	2	1	Median	1.1203	1.1053	5.6	2	0	Median	1.0182	1.1087	0.33355	2	0	Median	647080000	319610000	327470000	110540000	45716000	64824000	141680000	77909000	63775000	230390000	112160000	118230000	164460000	83822000	80639000	59947	679	56478	365516;365517;365518;365519;365520;365521;365522;365523	493516;493517;493518;493519;493520;493521;493522;493523;493524;493525	493517			10	
YTISQEAYDQR	0	Unmodified	1372.6259	0.62590859	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	2	1	2	32.929	32.125	2	4.0255E-13	28708	160511_QHF_FH_JSI10i_1	148.56	141.34			0.83551	0.90043	23.552	6	3	Median	1.1597	0.9504	NaN	1	0	Median	0.69825	0.83415	3.1741	2	1	Median	0.75461	0.71111	NaN	1	1	Median	1.1019	1.1782	26.137	2	1	Median	400140000	212940000	187210000	106470000	49427000	57040000	142870000	88128000	54746000	16293000	8953000	7339800	134510000	66427000	68083000	59948	4266	56479	365524;365525;365526;365527;365528;365529;365530	493526;493527;493528;493529;493530;493531;493532	493529			7	
YTISQEAYDQRQDTVR	0	Unmodified	1971.9286	0.92863256	4266	Q99426	TBCB	Tubulin-folding cofactor B	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							1	1	2	2	35.372	34.723	3	6.7551E-05	30312	160511_QHF_FH_JSI11i_3	80.361	70.955			1.0469	1.0287	13.209	6	0	Median	1.1678	1.0102	NaN	1	0	Median	0.98948	1.2073	NaN	1	0	Median	1.19	1.1557	16.554	2	0	Median	0.88394	0.9644	9.2277	2	0	Median	553240000	280700000	272540000	79201000	42754000	36447000	127660000	55795000	71864000	163500000	77444000	86053000	182880000	104700000	78179000	59949	4266	56480	365531;365532;365533;365534;365535;365536	493533;493534;493535;493536;493537;493538;493539;493540;493541	493534			9	
YTIVQQQIPSFLQK	1	Unmodified	1691.9247	0.9246568	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2.67	0.471		1	2								1		2	82.591	82.153	2	5.9464E-24	71310	160511_QHF_FH_JSI12i_3	156.14	123.62			0.97218	1.0963	1.0854	2	2	Median	NaN	NaN	NaN	0	0	Median	0.91188	1.1047	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.0365	1.0879	NaN	1	1	Median	29898000	15298000	14599000	0	0	0	8047400	5888400	2159000	0	0	0	21850000	9409600	12440000	59950	4398	56481	365537;365538;365539	493542;493543;493544	493544			3	
YTKDHTVR	1	Acetyl (K)	1060.5302	0.53015772	2380	Q13263	TRIM28	Transcription intermediary factor 1-beta	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.7	0.445								3	8	2	4	2	3	12.419	4.4608	2;3	0.00048254	4616	160513_QHF_FH_JSI11Kac_6	95.502	76.407			0.81276	0.93764	114.8	10	1	Median	1.2401	1.0826	2.4947	2	0	Median	23.524	27.511	179.16	3	1	Plateau	0.52439	0.51514	7.5635	2	0	Median	0.73446	0.79275	5.2384	3	0	Median	127810000	68125000	59681000	24115000	11233000	12882000	25148000	7167600	17980000	50423000	33449000	16974000	28120000	16275000	11845000	59951	2380	56482	365540;365541;365542;365543;365544;365545;365546;365547;365548;365549;365550	493545;493546;493547;493548;493549;493550;493551;493552;493553;493554;493555;493556;493557	493545	2453		13	
YTKFSDSYASVIK	2	Acetyl (K)	1549.7664	0.76642482	1126	P17812	CTPS1	CTP synthase 1	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		74.083	63.352	2	0.0084889	33818	160513_QHF_FH_JSI11Kac_5	64.64	46.581			0.29736	0.28806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29736	0.28806	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2845100	2443500	401560	0	0	0	0	0	0	2845100	2443500	401560	0	0	0	59952	1126	56483	365551	493558	493558	973		1	
YTLETRPNQEGIDVR	0	Unmodified	1789.8959	0.89587586	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	42.511	42.4	2;3	0.00019393	36230	160511_QHF_FH_JSI12i_3	71.08	59.057			0.85537	0.8462	15.998	4	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.9743	0.91369	13.916	2	0	Median	0.75526	0.76885	16.621	2	0	Median	625180000	352020000	273170000	0	0	0	0	0	0	351560000	200450000	151110000	273630000	151570000	122060000	59953	1060	56484	365552;365553;365554;365555	493559;493560;493561;493562;493563;493564	493563			6	
YTLFSASSEGQNHSR	0	Unmodified	1682.7649	0.76486169	3736	Q8TEQ6	GEMIN5	Gem-associated protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9.5	6.5			3						3	3	2	1		39.091	33.056	2;3	3.1639E-06	27590	160511_QHF_FH_JSI10i_3	125.33	120.94			1.302	1.2241	15.345	5	1	Median	1.5076	1.2706	16.221	2	0	Median	0.95	1.1207	12.484	2	0	Median	1.5079	1.4776	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	222670000	90999000	131670000	86292000	26787000	59505000	129780000	61657000	68122000	6602300	2555000	4047300	0	0	0	59954	3736	56485	365556;365557;365558;365559;365560;365561	493565;493566;493567;493568;493569;493570;493571;493572	493566			8	
YTLNNWLATVTLGQAGMHATYYHK	1	Unmodified	2752.3432	0.34315557	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.3	5.87			4						10	3	4	4	3	89.718	83.967	2;3;4	0	43194	160513_QHF_FH_JSI11Kac_6	353.31	314.73			1.0872	1.0334	23.238	14	2	Median	1.1093	0.97511	11.604	3	0	Median	0.82985	0.97888	14.414	4	0	Median	1.1428	1.0763	13.785	4	2	Median	1.5458	1.623	36.321	3	0	Median	16548000000	7728400000	8819600000	3546900000	1592000000	1954900000	8890200000	4392800000	4497400000	2542800000	1110400000	1432400000	1568200000	633200000	934970000	59955	754	56486	365562;365563;365564;365565;365566;365567;365568;365569;365570;365571;365572;365573;365574;365575	493573;493574;493575;493576;493577;493578;493579;493580;493581;493582;493583;493584;493585;493586;493587;493588;493589;493590;493591;493592;493593;493594;493595;493596;493597;493598;493599	493582			26	
YTLNNWLATVTLGQAGMHATYYHK	1	Oxidation (M)	2768.3381	0.3380702	754	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	1	3	83.981	75.722	3;4	1.2384E-172	41104	160513_QHF_FH_JSI9Kac_6	282.75	276.1			1.0076	1.0394	9.642	8	4	Median	1.0789	0.90955	2.603	2	0	Median	0.88532	1.0479	14.297	2	1	Median	1.2096	1.1461	NaN	1	1	Median	1.0079	1.0582	1.9244	3	2	Plateau	5355600000	2891500000	2464100000	1193000000	588350000	604610000	1273100000	822180000	450880000	423610000	255080000	168530000	2466000000	1225900000	1240100000	59956	754	56486	365576;365577;365578;365579;365580;365581;365582;365583	493600;493601;493602;493603;493604;493605;493606;493607;493608;493609;493610	493601		259	11	
YTLNVLEDLGDGQK	1	Unmodified	1563.7781	0.77805214	1039	P13797	PLS3	Plastin-3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.47	0.499	9	8								3	4	5	5	82.242	81.681	2;3	9.3413E-41	72127	160511_QHF_FH_JSI9i_2	174.9	145.14			0.8521	0.87434	23.306	10	6	Median	1.35	1.1068	NaN	1	1	Median	0.7161	0.82533	12.369	2	1	Median	0.85412	0.83009	26.105	4	1	Median	0.86928	0.96243	29.074	3	3	Median	801030000	430040000	370990000	47483000	24308000	23174000	236110000	146320000	89791000	195690000	100700000	94992000	321750000	158710000	163040000	59957	1039	56487	365584;365585;365586;365587;365588;365589;365590;365591;365592;365593;365594;365595;365596;365597;365598;365599;365600	493611;493612;493613;493614;493615;493616;493617;493618;493619;493620;493621;493622;493623;493624;493625;493626;493627;493628;493629	493626			19	
YTLPLTEGK	1	Unmodified	1020.5492	0.54916182	5161	Q9NZM1	MYOF	Myoferlin	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	1.25	0.433	3	1								1	1	1	1	48.798	48.112	2	0.010039	41240	160511_QHF_FH_JSI12i_2	50.805	35.423			0.79699	0.85837	29.067	3	0	Plateau	0.61611	0.51257	NaN	1	0	Median	0.70356	0.83494	NaN	1	0	Median	0.90284	0.86015	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	114920000	63301000	51616000	22611000	14242000	8369300	45320000	25962000	19358000	46985000	23097000	23888000	0	0	0	59958	5161	56488	365601;365602;365603;365604	493630;493631	493631			2	
YTLPLYHAMMGGSEVAQTLAK	1	Unmodified	2280.1283	0.12826034	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.56	0.497		4	5							2	4	1	2	92.851	92.368	3	2.4391E-102	82071	160511_QHF_FH_JSI11i_3	255.6	246.04			0.89805	1.0283	27.221	8	4	Median	1.209	1.0059	34.699	2	1	Median	0.86631	1.0005	28.68	3	2	Median	1.3085	1.2128	NaN	1	0	Median	0.88219	0.94309	38.266	2	1	Median	1603800000	782810000	820980000	215880000	94773000	121110000	412200000	247300000	164900000	380060000	153270000	226790000	595660000	287480000	308180000	59959	4715	56489	365605;365606;365607;365608;365609;365610;365611;365612;365613	493632;493633;493634;493635;493636;493637;493638;493639;493640;493641;493642;493643;493644;493645;493646;493647;493648;493649;493650;493651;493652;493653;493654	493634			23	
YTLPLYHAMMGGSEVAQTLAK	1	Oxidation (M)	2296.1232	0.12317496	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	1	0			By MS/MS	By MS/MS	3	0			5									2	3	77.929	77.744	3	2.0508E-22	65402	160511_QHF_FH_JSI12i_3	150.94	142.76			1.1809	1.1878	26.159	4	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.75414	0.73354	NaN	1	1	Median	1.2542	1.2588	7.4379	3	2	Median	294570000	145050000	149520000	0	0	0	0	0	0	63133000	31230000	31902000	231430000	113820000	117610000	59960	4715	56489	365614;365615;365616;365617;365618	493655;493656;493657;493658;493659;493660	493659		2521;2522	6	
YTLPLYHAMMGGSEVAQTLAK	1	2 Oxidation (M)	2312.1181	0.11808959	4715	Q9H4A4	RNPEP	Aminopeptidase B	yes	yes	0	0	2	0			By MS/MS		3	0			1									1		67.376	67.376	3	0.00038275	60020	160511_QHF_FH_JSI11i_3	47.499	37.841			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59961	4715	56489	365619	493661	493661		2521;2522	1	
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	1	Oxidation (M)	3113.5478	0.54784778	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	94.607	94.263	3	1.1422E-12	85611	160511_QHF_FH_JSI11i_1	77.925	71.844			1.3279	1.219	8.9157	4	0	Median	1.3276	1.1286	NaN	1	0	Median	0.95197	1.1513	NaN	1	0	Median	1.3673	1.2907	NaN	1	0	Median	1.3283	1.3577	NaN	1	0	Median	244110000	124850000	119260000	31372000	11834000	19538000	80125000	46552000	33574000	62972000	29664000	33309000	69643000	36801000	32842000	59962	814	56490	365620;365621;365622;365623	493662;493663;493664;493665;493666;493667;493668;493669;493670;493671;493672;493673;493674;493675	493663		342	14	
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	1	Unmodified	3097.5529	0.55293316	814	P04792	HSPB1	Heat shock protein beta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.22	0.629	16		2							5	6	4	3	100.32	100.19	2;3;4;5	3.6446E-121	90824	160511_QHF_FH_JSI10i_1	179.86	177.64			1.1123	1.0942	16.985	17	5	Median	1.2111	0.99359	16.653	5	3	Median	0.83524	0.98675	21.975	5	2	Median	1.1331	1.1045	10.515	4	0	Median	1.1765	1.2287	6.5497	3	0	Median	4312800000	2216100000	2096800000	459520000	218330000	241200000	1167900000	674520000	493330000	933550000	445020000	488530000	1751900000	878180000	873710000	59963	814	56490	365624;365625;365626;365627;365628;365629;365630;365631;365632;365633;365634;365635;365636;365637;365638;365639;365640;365641	493676;493677;493678;493679;493680;493681;493682;493683;493684;493685;493686;493687;493688;493689;493690;493691;493692;493693;493694;493695;493696;493697;493698;493699;493700;493701;493702;493703;493704;493705;493706;493707;493708;493709;493710;493711;493712;493713;493714;493715;493716;493717;493718;493719;493720;493721;493722;493723;493724;493725;493726;493727;493728	493706			53	
YTLSQQPWAQPAK	1	Unmodified	1516.7674	0.76742787	4135	Q96JB2	COG3	Conserved oligomeric Golgi complex subunit 3	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		53.965	53.447	2	0.0084426	46151	160511_QHF_FH_JSI11i_2	58.889	46.883			0.28165	0.29457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.28165	0.29457	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	22066000	16379000	5687300	0	0	0	0	0	0	22066000	16379000	5687300	0	0	0	59964	4135	56491	365642	493729	493729			1	
YTLWNFLPK	1	Unmodified	1180.6281	0.62808085	3585	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	yes	yes	0	0	0	0		By MS/MS		By MS/MS	3	0			2								1		1	96.532	96.322	2	0.0021594	83193	160511_QHF_FH_JSI12i_3	75.109	70.326			1.0791	1.2239	47.649	2	1	Median	NaN	NaN	NaN	0	0	Median	0.72794	0.87378	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.5997	1.7142	NaN	1	1	Median	19914000	6673400	13241000	0	0	0	7848100	2308300	5539800	0	0	0	12066000	4365100	7700800	59965	3585	56492	365643;365644	493730;493731	493731			2	
YTNLSYIGEGAYGMVCSAYDNVNK	1	Unmodified	2688.1836	0.18360297	1309	P28482	MAPK1	Mitogen-activated protein kinase 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1.25	0.433	3	1										1	3	96.418	96.131	3	8.9667E-06	87273	160511_QHF_FH_JSI12i_1	60.472	57.136			1.5243	1.5516	31.267	4	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0541	1.0238	NaN	1	0	Median	1.9993	2.1427	20.958	3	2	Plateau	61844000	24393000	37452000	0	0	0	0	0	0	17940000	8297400	9642300	43905000	16095000	27810000	59966	1309	56493	365645;365646;365647;365648	493732;493733;493734;493735;493736	493735			5	
YTNLVTGWQYR	0	Unmodified	1399.6884	0.68844927	4512	Q9BXB4	OSBPL11	Oxysterol-binding protein-related protein 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	8.2	6.37			3						2	2	1		2	61.91	60.807	2	0.0019759	52340	160511_QHF_FH_JSI12i_3	74.162	47.047			1.0669	1.1148	9.3916	3	2	Plateau	1.5772	1.3292	NaN	1	1	Median	0.9972	1.1744	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0669	1.1056	NaN	1	1	Median	67130000	28042000	39088000	10835000	3509200	7325300	17210000	7706600	9503800	0	0	0	39085000	16827000	22259000	59967	4512	56494	365649;365650;365651;365652;365653	493737;493738;493739;493740;493741;493742	493741			6	
YTPEEEQELEK	1	Unmodified	1393.6249	0.62490554	1305	P28290	SSFA2	Sperm-specific antigen 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	6									1	2	1	2	31.043	30.442	2	0.00065522	27129	160511_QHF_FH_JSI11i_1	83	73.047			3.6809	4.0272	69.772	4	4	Median	2.2856	1.9525	NaN	1	1	Median	2.8742	3.2715	NaN	1	1	Median	10.429	10.182	NaN	1	1	Median	4.714	4.9574	NaN	1	1	Median	119060000	27380000	91678000	37530000	9454200	28075000	25310000	8348100	16962000	26316000	2852100	23464000	29903000	6725100	23178000	59968	1305	56495	365654;365655;365656;365657;365658;365659	493743;493744;493745;493746;493747;493748	493743			6	
YTPEEIAMATVTALRR	0	Unmodified	1820.9455	0.94546859	944	P09972	ALDOC	Fructose-bisphosphate aldolase C	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.4	0.49		3	2							1	1	2	1	91.572	91.316	3	5.7114E-06	79168	160511_QHF_FH_JSI12i_3	110.84	99.573			1.0937	1.1503	22.008	5	0	Median	1.6303	1.3952	NaN	1	0	Median	1.0177	1.278	NaN	1	0	Median	1.1229	1.0941	7.0901	2	0	Median	0.7682	0.78944	NaN	1	0	Median	472780000	234880000	237900000	66136000	25110000	41026000	105110000	51796000	53319000	154360000	62941000	91420000	147170000	95036000	52136000	59969	944	56496	365660;365661;365662;365663;365664	493749;493750;493751;493752;493753;493754	493753			6	
YTPMFGPEAR	0	Unmodified	1167.5383	0.53827956	5104	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2.67	0.471		1	2							1		1	1	45.704	45.272	2	8.8759E-05	39902	160511_QHF_FH_JSI11i_3	85.676	79.894			0.78507	0.67543	27.736	3	0	Median	0.78507	0.67543	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.93887	0.88585	NaN	1	0	Median	0.48235	0.50871	NaN	1	0	Median	151320000	75412000	75904000	38259000	15661000	22598000	0	0	0	54004000	27315000	26689000	59053000	32437000	26616000	59970	5104	56497	365665;365666;365667	493755;493756;493757;493758	493756			4	
YTPPPHHIGK	1	Unmodified	1145.5982	0.5981777	392	O43920	NDUFS5	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	3	0			7							2	1	1	3	10.81	10.544	2;3;4	0.00051445	7567	160511_QHF_FH_JSI12i_3	72.23	63.382			1.0249	1.0533	21.823	7	1	Median	1.178	0.97402	18.624	2	0	Median	1.0031	1.1847	NaN	1	0	Median	0.87066	0.81829	NaN	1	0	Median	1.049	1.0533	29.561	3	1	Median	716130000	348100000	368030000	192430000	81078000	111350000	26404000	11726000	14678000	85102000	45000000	40102000	412190000	210300000	201890000	59971	392	56498	365668;365669;365670;365671;365672;365673;365674	493759;493760;493761;493762;493763;493764;493765	493764			7	
YTPSGQAGAAASESLFVSNHAY	0	Unmodified	2227.0182	0.018175845	803	P04075	ALDOA	Fructose-bisphosphate aldolase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.56	5.45	10	16	9					1	7	11	10	12	10	68.715	66.256	2;3	3.4644E-141	58733	160511_QHF_FH_JSI10i_2	358.05	344.63			0.9827	1.029	8.564	39	6	Median	1.2921	1.074	3.2659	10	2	Median	0.81335	0.97565	2.8133	9	1	Median	0.9827	1.0101	9.7692	11	1	Median	0.96132	1.0323	11.387	9	2	Median	19506000000	9850900000	9654700000	3869700000	1693100000	2176600000	5023400000	2817900000	2205500000	6541500000	3219900000	3321600000	4070900000	2120000000	1951000000	59972	803	56499	365675;365676;365677;365678;365679;365680;365681;365682;365683;365684;365685;365686;365687;365688;365689;365690;365691;365692;365693;365694;365695;365696;365697;365698;365699;365700;365701;365702;365703;365704;365705;365706;365707;365708;365709;365710;365711;365712;365713;365714;365715;365716;365717	493766;493767;493768;493769;493770;493771;493772;493773;493774;493775;493776;493777;493778;493779;493780;493781;493782;493783;493784;493785;493786;493787;493788;493789;493790;493791;493792;493793;493794;493795;493796;493797;493798;493799;493800;493801;493802;493803;493804;493805;493806;493807;493808;493809;493810;493811;493812;493813;493814;493815;493816;493817;493818;493819;493820;493821;493822;493823;493824;493825;493826;493827;493828;493829;493830;493831;493832;493833;493834;493835;493836;493837;493838;493839;493840;493841;493842;493843;493844;493845;493846;493847;493848;493849;493850;493851;493852;493853;493854;493855;493856;493857;493858	493836			93	
YTPSQQGVAFNSGAK	1	Unmodified	1553.7474	0.74742071	2443	Q13573	SNW1	SNW domain-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	4.18	4	3					1			1	2	3	2	36.868	34.938	2	0.00021489	31335	160511_QHF_FH_JSI11i_1	108.56	79.606			1.0218	1.0978	20.021	8	0	Median	1.0299	0.82334	NaN	1	0	Median	1.0103	1.2029	9.2202	2	0	Median	1.1938	1.1843	20.747	3	0	Median	0.86129	0.91101	22.668	2	0	Median	302710000	146190000	156520000	41233000	22525000	18708000	78130000	41341000	36789000	107830000	45996000	61833000	75515000	36328000	39187000	59973	2443	56500	365718;365719;365720;365721;365722;365723;365724;365725	493859;493860;493861;493862;493863;493864;493865;493866;493867;493868;493869;493870	493859			12	
YTPTQQGNMQVLVTYGGDPIPK	1	Unmodified	2406.1889	0.18894634	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	78.766	78.424	3	6.8281E-10	71544	160511_QHF_FH_JSI12i_1	101.94	92.091			0.68998	0.79535	24.75	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.64395	0.74732	NaN	1	0	Median	1.2145	1.1521	NaN	1	0	Median	1.1181	1.1424	NaN	1	0	Median	250810000	130950000	119860000	0	0	0	103570000	60672000	42902000	65695000	28504000	37191000	81538000	41769000	39770000	59974	512	56501	365726;365727;365728	493871;493872;493873;493874;493875	493874			5	
YTPVQQGPVGVNVTYGGDPIPK	1	Unmodified	2285.1692	0.16919718	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									2	2	1	2	71.858	71.308	2;3	2.232E-57	64686	160511_QHF_FH_JSI10i_1	274.45	260.42			1.0623	1.0315	26.756	7	2	Median	1.1274	0.92369	0.17633	2	0	Median	0.63665	0.75556	49.173	2	1	Median	1.0623	1.0315	NaN	1	0	Median	1.0998	1.1371	10.288	2	1	Median	2090900000	1088200000	1002700000	398200000	169520000	228680000	789710000	486230000	303480000	208820000	96980000	111840000	694160000	335440000	358720000	59975	1192	56502	365729;365730;365731;365732;365733;365734;365735	493876;493877;493878;493879;493880;493881;493882;493883;493884;493885;493886;493887;493888;493889;493890;493891;493892	493886			17	
YTQGGLENLELSR	0	Unmodified	1478.7365	0.73652168	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	54.128	53.181	2	0.011246	46006	160511_QHF_FH_JSI11i_2	54.471	34.167			0.90085	0.94721	12.412	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.86966	0.86762	NaN	1	0	Median	0.93315	1.0341	NaN	1	1	Median	97653000	52776000	44878000	0	0	0	0	0	0	51407000	29386000	22022000	46246000	23390000	22856000	59976	2597	56503	365736;365737	493893;493894;493895	493895			3	
YTQGGLENLELSRK	1	Unmodified	1606.8315	0.83148469	2597	Q15006	EMC2	ER membrane protein complex subunit 2	yes	yes	0	0	0	1		By MS/MS	By MS/MS		2.67	0.471		1	2								2	1		43.96	43.182	2;3	0.0049402	37883	160511_QHF_FH_JSI11i_3	69.01	58.487			1.0842	1.244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0842	1.244	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	72424000	22727000	49697000	0	0	0	60836000	22727000	38109000	11588000	0	11588000	0	0	0	59977	2597	56504	365738;365739;365740	493896;493897;493898	493896			3	
YTQPNICR	0	Unmodified	1050.4917	0.49166372	2545	Q14566	MCM6	DNA replication licensing factor MCM6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		19.206	18.548	2	0.0047811	15645	160511_QHF_FH_JSI9i_2	75.189	57.804			0.81546	0.77083	11.741	3	1	Median	0.93561	0.77083	NaN	1	1	Median	0.54252	0.66136	NaN	1	0	Median	0.81546	0.83299	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	132600000	70853000	61743000	34929000	18384000	16545000	35497000	21211000	14286000	62170000	31258000	30912000	0	0	0	59978	2545	56505	365741;365742;365743	493899;493900;493901	493899			3	
YTQQIIQGIQQLVK	1	Unmodified	1658.9356	0.93555583	3709	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		16	4							4	4	7	5	88.117	87.587	2;3	2.0413E-17	77811	160511_QHF_FH_JSI11i_3	138.71	94.404			0.11671	0.10637	212.95	12	12	Median	0.07108	0.060617	72.696	2	2	Median	0.027026	0.033323	245.95	3	3	Plateau	0.14616	0.13971	226.98	4	4	Median	0.086071	0.091514	299.27	3	3	Median	352500000	165750000	186750000	75843000	32017000	43825000	73346000	37227000	36120000	114960000	58525000	56433000	88355000	37981000	50374000	59979	3709	56506	365744;365745;365746;365747;365748;365749;365750;365751;365752;365753;365754;365755;365756;365757;365758;365759;365760;365761;365762;365763	493902;493903;493904;493905;493906;493907;493908;493909;493910;493911;493912;493913;493914;493915;493916;493917;493918;493919;493920;493921	493904			20	
YTQRVDYIMQLPVPMDAALNK	1	Unmodified	2465.2447	0.24468708	1573	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	yes	yes	0	0	0	1		By MS/MS		By MS/MS	3	0			2								1		1	97.043	96.615	3	4.3649E-05	83316	160511_QHF_FH_JSI12i_3	62.362	51.113			1.7513	2.1324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7513	2.1324	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6378800	1437000	4941800	0	0	0	6378800	1437000	4941800	0	0	0	0	0	0	59980	1573	56507	365764;365765	493922;493923;493924	493924			3	
YTQSNSVCYAK	1	Unmodified	1319.5816	0.58160094	1381	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	3	4.5	5	1					1				2	2	3	18.909	17.359	2	1.7468E-05	14676	160511_QHF_FH_JSI11i_1	104.42	66.337			1.1143	1.12	33.758	6	4	Median	NaN	NaN	NaN	0	0	Median	0.96109	1.1121	29.536	2	2	Median	0.90189	0.88276	26.826	2	0	Median	1.4723	1.5065	35.091	2	2	Median	878760000	379240000	499520000	0	0	0	316630000	144890000	171740000	203700000	92298000	111400000	358440000	142050000	216380000	59981	1381	56508	365766;365767;365768;365769;365770;365771;365772	493925;493926;493927;493928;493929;493930;493931;493932	493926			8	
YTQVGPDHNR	0	Unmodified	1185.5527	0.55268407	2265	Q08211	DHX9	ATP-dependent RNA helicase A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.87	5.08		8	4					3		4	2	5	4	7.49	6.5153	2;3	5.5995E-14	4448	160511_QHF_FH_JSI12i_3	157.96	124.22			0.97428	1.0388	16.092	13	1	Median	0.96391	0.8189	1.1676	2	0	Median	0.84189	1.0341	5.6457	2	0	Median	1.1152	1.0478	15.636	5	1	Median	0.87366	0.94612	17.153	4	0	Median	5352300000	2587900000	2764400000	473710000	219910000	253810000	949770000	516440000	433330000	2037800000	952590000	1085200000	1891000000	898920000	992050000	59982	2265	56509	365773;365774;365775;365776;365777;365778;365779;365780;365781;365782;365783;365784;365785;365786;365787	493933;493934;493935;493936;493937;493938;493939;493940;493941;493942;493943;493944;493945;493946;493947;493948;493949;493950;493951;493952;493953	493952			21	
YTRPTPVQK	1	Unmodified	1088.5978	0.59784335	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	0	0	0	1	By MS/MS	By MS/MS			7.33	6.13			4						2	3	3			10.566	7.8126	2;3	0.0038572	6628	160511_QHF_FH_JSI10i_3	78.334	48.149			0.80981	0.81639	24.743	6	1	Median	0.79586	0.69282	16.516	3	1	Median	0.824	0.96448	14.219	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	745290000	415580000	329710000	413430000	229270000	184160000	331860000	186310000	145550000	0	0	0	0	0	0	59983	154	56510	365788;365789;365790;365791;365792;365793	493954;493955;493956;493957;493958;493959	493954			6	
YTRPTPVQKHAIPIIK	2	Acetyl (K)	1903.1044	0.1043525	154	O00571;O15523	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	yes	no	1	0	0	2			By MS/MS		16	0									1			1		57.444	47.718	4	0.0070887	25809	160513_QHF_FH_JSI11Kac_6	50.053	39.856			0.10696	0.10388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.10696	0.10388	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	21624000	21104000	520580	0	0	0	0	0	0	21624000	21104000	520580	0	0	0	59984	154	56511	365794	493960	493960	92		1	
YTSIPTSVEESGKK	2	Unmodified	1524.7672	0.7671531	5034	Q9NVI1	FANCI	Fanconi anemia group I protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	29.149	28.035	3	0.0038753	24454	160511_QHF_FH_JSI10i_2	50.806	42.895			1.363	1.5758	29.277	2	2	Median	NaN	NaN	NaN	0	0	Median	1.0476	1.2812	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.7732	1.9383	NaN	1	1	Median	89348000	42138000	47210000	0	0	0	43900000	22885000	21015000	0	0	0	45448000	19252000	26195000	59985	5034	56512	365795;365796;365797	493961;493962;493963	493963			3	
YTSLMLR	0	Unmodified	882.46332	0.4633237	472	O75083	WDR1	WD repeat-containing protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4							2	2	2	2	38.739	37.868	2	0.00078407	31528	160511_QHF_FH_JSI10i_3	135.87	92.865			0.79949	0.74212	19.323	8	0	Median	1.053	0.87072	30.406	2	0	Median	0.65259	0.75925	20.293	2	0	Median	0.83976	0.82468	7.1096	2	0	Median	0.58009	0.62953	4.2429	2	0	Median	2257500000	1145300000	1112200000	536970000	210190000	326770000	554650000	300670000	253980000	543050000	274380000	268670000	622830000	360050000	262780000	59986	472	56513	365798;365799;365800;365801;365802;365803;365804;365805	493964;493965;493966;493967;493968;493969;493970;493971;493972;493973;493974;493975;493976;493977	493968			14	
YTSQIVGR	0	Unmodified	922.48723	0.48723027	5448	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.57	6.43		4						3		1	2	2	2	20.187	15.819	2	0.025991	9891	160513_QHF_FH_JSI11Kac_5	52.403	36.259			0.95775	0.98396	14.532	7	0	Median	0.95775	0.83682	NaN	1	0	Median	0.73652	0.87102	8.3243	2	0	Median	1.086	1.1005	15.834	2	0	Median	0.97969	1.0679	1.7714	2	0	Median	519360000	278100000	241270000	124930000	70016000	54914000	159500000	86494000	73004000	144470000	76604000	67866000	90465000	44984000	45481000	59987	5448	56514	365806;365807;365808;365809;365810;365811;365812	493978;493979	493978			2	
YTSWYVALK	1	Unmodified	1129.5808	0.5807963	921	P09038	FGF2	Fibroblast growth factor 2	yes	yes	0	0	0	0	By MS/MS		By MS/MS		16	0									2	1		1		72.3	63.31	2	0.006921	33638	160513_QHF_FH_JSI9Kac_6	74.301	41.409			1.1625	1.0758	36.705	2	2	Median	0.96961	0.82985	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.3939	1.3945	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	55079000	22575000	32504000	20005000	9827300	10178000	0	0	0	35073000	12748000	22326000	0	0	0	59988	921	56515	365813;365814	493980;493981	493981			2	
YTTKHLNDETTSK	2	Acetyl (K)	1578.7526	0.75256567	5015	Q9NUQ9	FAM49B	Protein FAM49B	yes	yes	1	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15.3	0.64							1	5	4	1	3	3	3	54.862	44.866	2;3	0.005453	26389	160513_QHF_FH_JSI12Kac_5	70.028	49.251			0.0005985	0.00067878	362.16	7	5	Median	0.0035911	0.0033184	NaN	1	1	Median	0.029939	0.035589	559.96	2	1	Median	0.013385	0.013378	440.23	2	1	Median	0.00025313	0.0002568	74.34	2	2	Median	7304100000	7299200000	4931500	327650000	327260000	383060	3443200000	3440700000	2531700	675670000	674010000	1661600	2857600000	2857200000	355210	59989	5015	56516	365815;365816;365817;365818;365819;365820;365821;365822;365823;365824	493982;493983;493984;493985;493986;493987;493988;493989;493990;493991	493986	3296		10	
YTTLIAK	1	Unmodified	808.46945	0.46945494	5280	Q9UGI8	TES	Testin	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		26.597	26.233	2	0.035052	22025	160511_QHF_FH_JSI11i_2	50.966	17.228			2.7094	2.7182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.7094	2.7182	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	236120000	85182000	150940000	0	0	0	0	0	0	236120000	85182000	150940000	0	0	0	59990	5280	56517	365825	493992	493992			1	
YTTPEDATPEPGEDPR	0	Unmodified	1773.7693	0.76933795	2048	Q5JWF2;P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.67	4.99	7					2				1	2	3	3	33.661	31.298	2;3	6.8389E-31	27562	160511_QHF_FH_JSI9i_1	196.38	191.87			0.95845	1.0414	12.013	9	0	Median	1.297	1.0847	NaN	1	0	Median	0.76002	0.89131	10.596	2	0	Median	1.2096	1.1705	11.542	3	0	Plateau	0.95845	1.0414	13.023	3	0	Median	1228100000	655800000	572270000	206940000	96718000	110220000	308480000	200220000	108270000	364340000	175510000	188830000	348310000	183350000	164960000	59991	2048	56518	365826;365827;365828;365829;365830;365831;365832;365833;365834	493993;493994;493995;493996;493997;493998;493999;494000;494001;494002;494003;494004;494005	494003			13	
YTTPSGEVR	0	Unmodified	1008.4876	0.4876242	1862	P55786;A6NEC2	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	4	4								2	2	2	2	14.459	13.936	2	0.00011447	11523	160511_QHF_FH_JSI10i_1	92.47	49.556			0.94079	0.92083	14.089	8	0	Median	1.1247	0.94942	5.2539	2	0	Median	0.69971	0.85779	6.1226	2	0	Median	0.89341	0.89171	5.4738	2	0	Median	1.0726	1.1742	10.887	2	0	Median	1468500000	748450000	720050000	333610000	144540000	189070000	366420000	208590000	157840000	381500000	199330000	182160000	386970000	195990000	190990000	59992	1862	56519	365835;365836;365837;365838;365839;365840;365841;365842	494006;494007;494008;494009;494010;494011;494012	494009			7	
YTTTQQVVK	1	Unmodified	1066.5659	0.56587452	2947	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	16.178	15.71	2	0.023191	13126	160511_QHF_FH_JSI11i_1	51.749	40.925			0.92855	1.0312	18.359	4	0	Median	0.86104	0.71769	NaN	1	0	Median	0.882	1.0452	NaN	1	0	Median	1.0664	1.0353	NaN	1	0	Median	0.97756	1.027	NaN	1	0	Median	388750000	193180000	195580000	97440000	57851000	39589000	111420000	54687000	56731000	89223000	39472000	49750000	90674000	41168000	49506000	59993	2947	56520	365843;365844;365845;365846	494013;494014	494013			2	
YTVLFYQMAK	1	Oxidation (M)	1278.6318	0.63184559	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	1	0	By MS/MS		By MS/MS		16	0									2	1		1		67.13	57.525	2	0.0020317	30600	160513_QHF_FH_JSI9Kac_6	73.665	54.394			4.1528	3.9186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.1528	3.9186	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	75515000	10332000	65183000	0	0	0	0	0	0	75515000	10332000	65183000	0	0	0	59994	3004	56521	365847;365848	494015;494016	494016		2181	2	
YTVLFYQMAK	1	Unmodified	1262.6369	0.63693097	3004	Q5VZL5	ZMYM4	Zinc finger MYM-type protein 4	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	77.309	68.902	2	1.1359E-09	37409	160513_QHF_FH_JSI11Kac_6	133.58	109.73			1.0825	1.0828	19.157	4	2	Median	0.99466	0.85268	NaN	1	0	Median	0.79245	0.9492	NaN	1	0	Median	1.3118	1.2351	NaN	1	1	Median	1.1782	1.25	NaN	1	1	Median	436940000	228290000	208660000	104980000	53065000	51914000	140680000	79523000	61156000	137240000	72098000	65145000	54044000	23600000	30443000	59995	3004	56521	365849;365850;365851;365852	494017;494018;494019;494020;494021;494022	494017			6	
YTVNFLEAK	1	Unmodified	1083.5601	0.56006086	3371	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	60.016	59.197	2	0.00092088	51210	160511_QHF_FH_JSI11i_2	71.614	47.658			0.9612	0.95551	16.489	5	0	Median	0.99431	0.84339	NaN	1	0	Median	0.81183	0.97718	NaN	1	0	Median	0.84395	0.81978	21.666	2	0	Median	0.9612	1.0805	NaN	1	0	Median	528880000	270360000	258520000	117120000	56218000	60907000	117260000	70770000	46494000	183500000	92389000	91114000	110990000	50981000	60005000	59996	3371	56522	365853;365854;365855;365856;365857	494023;494024;494025	494024			3	
YTVQDESHSEWVSCVR	0	Unmodified	1980.8636	0.86358946	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.05	5.49		11	5						4	4	4	7	5	49.025	46.514	2;3	4.9189E-53	40979	160511_QHF_FH_JSI9i_2	223.15	221.28			1.0851	1.1333	24.931	19	6	Median	1.3767	1.1597	13.709	4	1	Median	0.85019	1.0539	7.9509	4	2	Linear	0.88596	0.85488	19.852	6	3	Median	1.2992	1.3988	16.296	5	0	Median	4019600000	2065400000	1954100000	353740000	152200000	201530000	1238400000	688400000	549990000	1417500000	747770000	669770000	1009900000	477060000	532850000	59997	2061	56523	365858;365859;365860;365861;365862;365863;365864;365865;365866;365867;365868;365869;365870;365871;365872;365873;365874;365875;365876;365877	494026;494027;494028;494029;494030;494031;494032;494033;494034;494035;494036;494037;494038;494039;494040;494041;494042;494043;494044;494045;494046;494047;494048;494049;494050;494051;494052;494053;494054;494055;494056;494057;494058;494059;494060	494040			35	
YTVQFSK	1	Unmodified	871.44397	0.44396847	3438	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	33.375	32.045	2	0.020104	27182	160511_QHF_FH_JSI12i_2	52.786	15.692			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	59998	3438	56524	365878	494061	494061			1	
YTVYCSLIK	1	Unmodified	1145.5791	0.57908174	3222	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.38	6.69		4	1						3	3	1	2	2	59.247	55.015	2	3.9541E-06	47231	160511_QHF_FH_JSI12i_2	121.05	79.396			1.078	0.9099	25.305	8	0	Median	1.1129	0.97297	4.8417	3	0	Plateau	0.68685	0.8252	NaN	1	0	Median	0.73039	0.7229	29.463	2	0	Median	1.1525	1.2842	8.538	2	0	Median	635340000	352840000	282500000	86719000	37399000	49320000	118040000	66356000	51687000	265410000	170330000	95084000	165170000	78762000	86408000	59999	3222	56525	365879;365880;365881;365882;365883;365884;365885;365886	494062;494063;494064;494065;494066;494067;494068;494069;494070;494071;494072	494063			11	
YTYEHDPITK	1	Unmodified	1265.5928	0.59281755	1528	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		6								2	2	2		24.574	23.828	2;3	0.0074585	19809	160511_QHF_FH_JSI11i_2	51.445	45.141			0.98679	0.93245	25.231	6	1	Median	1.1446	0.99571	16.122	2	0	Median	0.54816	0.67704	29.241	2	1	Median	0.98679	1.0083	4.214	2	0	Median	NaN	NaN	NaN	0	0	Median	291760000	145890000	145870000	56400000	27192000	29208000	79237000	48595000	30643000	156120000	70098000	86020000	0	0	0	60000	1528	56526	365887;365888;365889;365890;365891;365892	494073;494074;494075;494076;494077	494075			4	
YTYGKPVK	2	Unmodified	954.51747	0.51746776	3173	Q6YHK3	CD109	CD109 antigen	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	11.716	11.805	3	0.023828	9048	160511_QHF_FH_JSI12i_3	31.934	21.52			1.3724	1.395	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3724	1.395	NaN	1	0	Median	188730000	81781000	106950000	0	0	0	0	0	0	0	0	0	188730000	81781000	106950000	60001	3173	56527	365893	494078	494078			1	
YTYLEKAIK	2	Acetyl (K)	1169.6332	0.6332258	3922	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14.5	0.5							2	2			1	2	1	64.796	53.94	2	0.0039055	29281	160513_QHF_FH_JSI11Kac_5	80.231	53.847			0.69582	0.70306	49.006	3	0	Median	NaN	NaN	NaN	0	0	Median	0.43749	0.5226	NaN	1	0	Median	0.69582	0.70306	NaN	1	0	Median	1.2306	1.3612	NaN	1	0	Median	31141000	21630000	9510500	0	0	0	9343500	6373800	2969800	12108000	10574000	1534700	9688800	4682800	5006000	60002	3922	56528	365894;365895;365896;365897	494079;494080;494081	494080	3005		3	
YTYMEEMLGNVAGAR	0	Unmodified	1703.7647	0.76472704	4566	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		80.862	80.241	2	0.02478	70511	160511_QHF_FH_JSI11i_2	48.948	37.736			0.84016	0.83958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.84016	0.83958	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	33722000	17442000	16280000	0	0	0	0	0	0	33722000	17442000	16280000	0	0	0	60003	4566	56529	365898	494082	494082			1	
YTYSEWHSFTQPR	0	Unmodified	1700.7583	0.75831975	2189	Q02487;Q14574	DSC2;DSC3	Desmocollin-2;Desmocollin-3	yes	no	0	0	0	0		By MS/MS	By matching	By MS/MS	7.33	6.13			2						1		1	1	1	52.647	49.741	3	0.0004024	42753	160511_QHF_FH_JSI12i_3	61.03	57.257			1.0119	1.2006	9.3357	3	0	Median	NaN	NaN	NaN	0	0	Median	1.0119	1.2006	NaN	1	0	Median	1.3184	1.229	NaN	1	0	Median	1.0101	1.0347	NaN	1	0	Median	99167000	47759000	51408000	0	0	0	17090000	9091300	7998600	45090000	21133000	23958000	36987000	17535000	19451000	60004	2189	56530	365899;365900;365901	494083;494084;494085	494083			3	
YVAEIEK	1	Unmodified	850.44363	0.44363412	209	O14818	PSMA7	Proteasome subunit alpha type-7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.75	5.36	2	4					2			1	3	2	2	23.116	20.367	2	0.0057267	16919	160511_QHF_FH_JSI11i_2	97.602	48.012			0.95807	1.0501	36.797	8	8	Median	1.4771	1.2567	NaN	1	1	Median	1.1511	1.3872	55.273	3	3	Plateau	0.95807	0.96306	15.122	2	2	Median	0.94043	1.0295	49.204	2	2	Median	4146700000	1555300000	2591400000	515380000	202760000	312620000	1358300000	494040000	864270000	676770000	278850000	397910000	1596200000	579660000	1016500000	60005	209	56531	365902;365903;365904;365905;365906;365907;365908;365909	494086;494087;494088;494089;494090;494091;494092;494093	494092			8	
YVALTSLLK	1	Unmodified	1006.6063	0.60628277	369	O43747	AP1G1	AP-1 complex subunit gamma-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.2	5.42		4	4						2	3	2	3	2	75.325	72.87	2	3.7951E-06	64662	160511_QHF_FH_JSI11i_2	121.62	93.107			0.89254	0.98225	24.755	10	0	Median	1.225	0.99559	32.918	3	0	Plateau	0.86427	1.007	9.0711	2	0	Median	0.85803	0.85085	19.748	3	0	Median	1.0931	1.1567	17.563	2	0	Median	1141300000	539580000	601760000	207990000	95904000	112080000	194860000	109650000	85209000	394040000	187570000	206470000	344450000	146450000	198000000	60006	369	56532	365910;365911;365912;365913;365914;365915;365916;365917;365918;365919	494094;494095;494096;494097;494098;494099;494100;494101;494102;494103;494104;494105	494101			12	
YVALVQEK	1	Unmodified	948.52803	0.52803245	1804	P53618	COPB1	Coatomer subunit beta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.83	4.56	1	4					1			1	1	2	2	31.147	28.894	2	0.012756	24414	160511_QHF_FH_JSI12i_2	61.962	34.708			2.0678	2.2608	46.921	6	6	Median	3.366	2.854	NaN	1	1	Median	1.6985	2.0473	NaN	1	1	Median	1.9501	1.884	39.819	2	2	Median	2.6089	2.8693	84.145	2	2	Median	341470000	106960000	234520000	51193000	13250000	37943000	52431000	21453000	30978000	166330000	53060000	113270000	71524000	19194000	52331000	60007	1804	56533	365920;365921;365922;365923;365924;365925	494106;494107;494108;494109;494110;494111	494107			6	
YVANLFPYK	1	Unmodified	1113.5859	0.58588168	2641	Q15181	PPA1	Inorganic pyrophosphatase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.68	5.37	3	9	6						4	4	7	6	5	64.307	62.049	2	5.1148E-06	52407	160511_QHF_FH_JSI12i_2	116.88	0			0.75925	0.79546	93.775	22	16	Plateau	1.5938	1.3177	143.1	4	3	Linear	0.46284	0.56425	88.61	7	6	Median	0.69038	0.68266	92.067	6	5	Median	0.6921	0.70721	71.041	5	2	Median	8583900000	5081300000	3502600000	1540200000	1048600000	491660000	2645900000	1651800000	994040000	2785700000	1613600000	1172100000	1612000000	767320000	844720000	60008	2641	56534	365926;365927;365928;365929;365930;365931;365932;365933;365934;365935;365936;365937;365938;365939;365940;365941;365942;365943;365944;365945;365946;365947	494112;494113;494114;494115;494116;494117;494118;494119;494120;494121;494122;494123;494124;494125;494126;494127;494128;494129;494130;494131;494132;494133;494134;494135;494136	494115			24	
YVANMHGDETVGR	0	Unmodified	1447.6514	0.65141184	1052	P14384	CPM	Carboxypeptidase M	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2.29	0.452		5	2							2	3	2		19.201	18.707	2;3	4.9315E-07	15883	160511_QHF_FH_JSI9i_2	94.616	60.363			1.1462	1.0955	37.699	3	2	Median	NaN	NaN	NaN	0	0	Median	0.8031	0.98215	52.563	2	2	Median	1.1462	1.0955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	162270000	75741000	86526000	6573200	0	6573200	83414000	51172000	32242000	72280000	24570000	47711000	0	0	0	60009	1052	56535	365948;365949;365950;365951;365952;365953;365954	494137;494138;494139;494140;494141;494142;494143	494140			7	
YVAQAGLEPLASGDPSASASHAAGITGSR	0	Unmodified	2740.3416	0.34163525	633	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	1	2	60.942	60.156	3	3.0276E-19	52310	160511_QHF_FH_JSI11i_2	104.87	101.66			1.0843	0.97862	11.461	5	2	Median	1.0843	0.95643	NaN	1	0	Median	0.77448	0.96142	NaN	1	1	Median	0.98031	0.97862	NaN	1	0	Median	1.1146	1.1872	3.0464	2	1	Median	143550000	78451000	65100000	27566000	12428000	15138000	30514000	21155000	9358900	40886000	24458000	16428000	44585000	20410000	24175000	60010	633	56536	365955;365956;365957;365958;365959	494144;494145;494146;494147;494148;494149;494150;494151;494152;494153;494154	494149			11	
YVAQAHDK	1	Unmodified	930.45593	0.45593014	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		4.5	5.16		4	1						1	1	1	4		4.9779	1.6255	2;3	0.00068133	2400	160511_QHF_FH_JSI11i_2	95.531	54.028			0.79911	0.78033	55.902	3	1	Median	0.56945	0.46656	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.065	1.0547	42.607	2	0	Median	NaN	NaN	NaN	0	0	Median	375690000	178310000	197380000	21554000	14604000	6950200	0	0	0	354130000	163700000	190430000	0	0	0	60011	2328	56537	365960;365961;365962;365963;365964;365965	494155;494156;494157;494158;494159;494160	494158			6	
YVAQAHDKPR	1	Unmodified	1183.6098	0.60980502	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By matching	3	0			8							3	2	2	1	5.682	5.3738	2;3;4	5.0984E-25	3264	160511_QHF_FH_JSI9i_3	193.38	176.14			0.90586	0.80763	18.314	8	0	Median	1.0378	0.83821	11.975	3	0	Median	0.56871	0.65167	8.4922	2	0	Median	0.94049	0.88788	18.406	2	0	Median	0.68183	0.6956	NaN	1	0	Median	2460500000	1152400000	1308200000	999720000	399660000	600050000	475560000	250600000	224960000	738650000	373850000	364800000	246590000	128250000	118340000	60012	2328	56538	365966;365967;365968;365969;365970;365971;365972;365973	494161;494162;494163;494164;494165;494166;494167;494168;494169;494170;494171	494168			11	
YVAQAHDKPR	1	Acetyl (K)	1225.6204	0.62036971	2328	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	yes	yes	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	15.7	0.458								3	7	1	2	4	3	16.856	8.6754	2;3	6.7166E-06	6430	160513_QHF_FH_JSI10Kac_6	116.3	94.218			0.5738	0.62422	62.754	10	0	Median	0.91961	0.762	NaN	1	0	Median	1.2174	1.4457	5.7798	2	0	Median	0.30638	0.29548	5.0657	4	0	Median	0.59595	0.64355	6.546	3	0	Median	160610000	106430000	54179000	5356600	2091300	3265300	29898000	12049000	17849000	101950000	76928000	25022000	23404000	15362000	8042500	60013	2328	56538	365974;365975;365976;365977;365978;365979;365980;365981;365982;365983	494172;494173;494174;494175;494176;494177;494178;494179;494180;494181;494182	494180	2425		11	
YVASAVFGVIGSQK	1	Unmodified	1424.7664	0.76636524	5451	Q9UNX4	WDR3	WD repeat-containing protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	12.8	5.63			2						6	2	2	3	1	74.71	68.598	2;3	2.2143E-40	60672	160511_QHF_FH_JSI12i_3	207.88	185.79			1.0507	1.0529	25.691	8	0	Median	1.2924	1.1068	30.316	2	0	Median	1.2541	1.4909	37.992	2	0	Median	1.1628	1.0657	8.6633	3	0	Plateau	1.04	1.0403	NaN	1	0	Median	333910000	169380000	164530000	59639000	29844000	29795000	71962000	35672000	36290000	109680000	54213000	55464000	92631000	49650000	42981000	60014	5451	56539	365984;365985;365986;365987;365988;365989;365990;365991	494183;494184;494185;494186;494187;494188;494189;494190;494191;494192;494193;494194	494190			12	
YVASSSK	1	Unmodified	740.37047	0.37046918	5054	Q9NVX2	NLE1	Notchless protein homolog 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		1	0	2										1	1		4.6169	4.4476	2	0.030187	2230	160511_QHF_FH_JSI11i_1	54.205	39.792			1.0083	1.0786	49.88	2	2	Median	NaN	NaN	NaN	0	0	Median	0.64289	0.75803	NaN	1	1	Median	1.5813	1.5348	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	227820000	119290000	108530000	0	0	0	123090000	68776000	54316000	104730000	50510000	54217000	0	0	0	60015	5054	56540	365992;365993	494195;494196	494195			2	
YVASYLLAALGGNSSPSAK	1	Unmodified	1867.968	0.96797818	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.7	6.38	7	10	9	1				5	8	9	10	13	8	88.106	84.156	2;3	1.5718E-209	74338	160511_QHF_FH_JSI10i_3	411.61	340.26			1.0233	1.045	29.81	35	4	Median	1.3503	1.1499	43.496	9	1	Median	0.89808	1.0735	13.66	9	1	Median	1.0233	1.0205	30.139	10	2	Median	0.9014	0.97775	15.387	7	0	Median	38653000000	17743000000	20910000000	10059000000	3821100000	6237800000	11191000000	5458400000	5732700000	10191000000	4685800000	5505400000	7211900000	3778000000	3434000000	60016	836	56541	365994;365995;365996;365997;365998;365999;366000;366001;366002;366003;366004;366005;366006;366007;366008;366009;366010;366011;366012;366013;366014;366015;366016;366017;366018;366019;366020;366021;366022;366023;366024;366025;366026;366027;366028;366029;366030;366031;366032;366033	494197;494198;494199;494200;494201;494202;494203;494204;494205;494206;494207;494208;494209;494210;494211;494212;494213;494214;494215;494216;494217;494218;494219;494220;494221;494222;494223;494224;494225;494226;494227;494228;494229;494230;494231;494232;494233;494234;494235;494236;494237;494238;494239;494240;494241;494242;494243;494244;494245;494246;494247;494248;494249;494250;494251;494252;494253;494254;494255;494256;494257;494258;494259;494260;494261;494262;494263;494264;494265;494266;494267;494268;494269;494270;494271;494272;494273;494274;494275;494276;494277;494278;494279;494280;494281;494282;494283;494284;494285;494286;494287;494288;494289;494290;494291;494292;494293;494294;494295;494296;494297;494298;494299;494300;494301;494302;494303	494227			107	
YVASYLLAALGGNSSPSAKDIK	2	Acetyl (K)	2266.1845	0.18451289	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	1	0	0	1		By MS/MS		By MS/MS	16	0									2		1		1	88.545	80.965	3	3.1166E-10	42758	160513_QHF_FH_JSI12Kac_6	155.87	141.62			1.1213	1.2409	102.57	2	2	Median	NaN	NaN	NaN	0	0	Median	2.1963	2.5628	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.57245	0.60084	NaN	1	1	Median	329540000	187520000	142020000	0	0	0	117310000	31749000	85558000	0	0	0	212230000	155770000	56465000	60017	836	56542	366034;366035	494304;494305	494304	485		2	
YVASYLLAALGGNSSPSAKDIKK	3	Acetyl (K)	2394.2795	0.27947591	836	P05387	RPLP2	60S acidic ribosomal protein P2	yes	yes	1	0	0	2		By MS/MS		By MS/MS	16	0									2		1		1	83.275	75.757	3	2.3096E-37	39774	160513_QHF_FH_JSI12Kac_6	169.42	161.97			0.78061	0.87074	10.351	2	0	Median	NaN	NaN	NaN	0	0	Median	0.69533	0.80929	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.87635	0.93686	NaN	1	0	Median	150650000	87921000	62733000	0	0	0	106970000	59624000	47343000	0	0	0	43687000	28297000	15389000	60018	836	56543	366036;366037	494306;494307	494306	485		2	
YVATLGVEVHPLVFHTNR	0	Unmodified	2051.0952	0.095244374	2021	P62826	RAN	GTP-binding nuclear protein Ran	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	5.7		7	21						9	13	6	7	11	71.38	68.515	2;3;4	3.5202E-35	58209	160511_QHF_FH_JSI10i_3	197.49	191.52			1.0603	0.92395	27.341	33	9	Median	1.0608	0.87449	25.423	10	1	Median	0.69502	0.83605	9.4224	6	1	Median	1.3845	1.3031	16.455	7	2	Median	0.99166	1.0246	24.032	10	5	Median	8265800000	4176400000	4089500000	1997900000	997410000	1000500000	2260100000	1352400000	907740000	1728700000	737440000	991220000	2279200000	1089100000	1190000000	60019	2021	56544	366038;366039;366040;366041;366042;366043;366044;366045;366046;366047;366048;366049;366050;366051;366052;366053;366054;366055;366056;366057;366058;366059;366060;366061;366062;366063;366064;366065;366066;366067;366068;366069;366070;366071;366072;366073;366074	494308;494309;494310;494311;494312;494313;494314;494315;494316;494317;494318;494319;494320;494321;494322;494323;494324;494325;494326;494327;494328;494329;494330;494331;494332;494333;494334;494335;494336;494337;494338;494339;494340;494341;494342;494343;494344;494345;494346;494347;494348;494349;494350;494351;494352;494353;494354;494355;494356;494357;494358;494359;494360;494361;494362;494363;494364;494365;494366;494367;494368;494369;494370;494371;494372	494317			64	
YVAVMPPHIGDQPLTGAYTVTLDGR	0	Unmodified	2670.3476	0.34757225	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	1	2	3	89.361	88.884	3	1.687E-63	76624	160511_QHF_FH_JSI12i_2	220.23	200.64			0.97238	1.0094	15.601	7	1	Median	1.2975	1.1037	NaN	1	0	Median	0.84068	1.0094	NaN	1	0	Median	0.97346	0.94542	6.518	2	0	Median	0.92879	1.0384	24.361	3	1	Median	868390000	448180000	420210000	143400000	56948000	86449000	148090000	76877000	71216000	330920000	180540000	150380000	245980000	133820000	112160000	60020	1334	56545	366075;366076;366077;366078;366079;366080;366081	494373;494374;494375;494376;494377;494378;494379;494380;494381;494382;494383;494384;494385;494386;494387;494388;494389;494390;494391;494392;494393;494394;494395;494396	494378			24	
YVAVMPPHIGDQPLTGAYTVTLDGRGPSR	0	Unmodified	3067.5549	0.55493926	1334	P30043	BLVRB	Flavin reductase (NADPH)	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				83.35	82.067	4	0.00017782	67454	160511_QHF_FH_JSI9i_3	46.678	40.245			1.4815	1.2158	NaN	1	1	Median	1.4815	1.2158	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	20851000	11547000	9303400	20851000	11547000	9303400	0	0	0	0	0	0	0	0	0	60021	1334	56546	366082	494397	494397			1	
YVDEASK	1	Unmodified	810.37595	0.37594848	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	8.2	5.88	2					3					1	2	2	6.0363	1.5857	2	0.0065059	2295	160513_QHF_FH_JSI11Kac_3	91.626	62.288			0.85172	0.94049	27.429	5	2	Median	NaN	NaN	NaN	0	0	Median	0.85172	1.0211	NaN	1	0	Median	0.83501	0.82319	18.839	2	1	Median	0.77935	0.84321	48.14	2	1	Median	3670200000	1763100000	1907100000	0	0	0	34508000	20104000	14405000	1766400000	786160000	980240000	1869300000	956840000	912420000	60022	1987	56547	366083;366084;366085;366086;366087	494398;494399;494400;494401;494402;494403;494404;494405	494401			8	
YVDEASKK	2	Unmodified	938.47091	0.4709115	1987	P62249	RPS16	40S ribosomal protein S16	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.97	5.84	6	11	7				5	6		7	8	10	10	5.2225	1.9875	2;3	0.00051591	2533	160511_QHF_FH_JSI12i_2	88.948	57.013			1.0535	1.0567	83.425	33	18	Median	1.0964	0.91898	107.97	7	5	Median	0.73415	0.8789	73.788	8	5	Median	1.2571	1.244	56.826	9	3	Median	0.67983	0.74839	99.823	9	5	Median	23918000000	11066000000	12852000000	3287400000	1385800000	1901600000	5931900000	2975900000	2956000000	8968400000	3641900000	5326600000	5730200000	3062600000	2667600000	60023	1987	56548	366088;366089;366090;366091;366092;366093;366094;366095;366096;366097;366098;366099;366100;366101;366102;366103;366104;366105;366106;366107;366108;366109;366110;366111;366112;366113;366114;366115;366116;366117;366118;366119;366120;366121;366122	494406;494407;494408;494409;494410;494411;494412;494413;494414;494415;494416;494417;494418;494419;494420;494421;494422;494423;494424;494425;494426;494427;494428;494429;494430;494431;494432;494433;494434;494435;494436;494437;494438;494439;494440	494410			35	
YVDIAIPCNNK	1	Unmodified	1305.6387	0.63872189	917	P08865	RPSA	40S ribosomal protein SA	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.65	5.82	7	4				3	3			2	3	6	6	54.425	50.185	2;3	1.023E-29	45086	160511_QHF_FH_JSI10i_1	190.73	149.28			1.0554	1.1602	52.227	16	7	Median	1.1932	0.999	38.261	2	1	Median	0.92331	1.0901	41.563	3	1	Median	0.95723	0.93304	52.225	6	3	Median	1.2597	1.3596	67.601	5	2	Median	3928900000	2053800000	1875100000	484180000	225140000	259030000	941640000	534030000	407600000	1246700000	719290000	527450000	1256300000	575330000	680980000	60024	917	56549	366123;366124;366125;366126;366127;366128;366129;366130;366131;366132;366133;366134;366135;366136;366137;366138;366139	494441;494442;494443;494444;494445;494446;494447;494448;494449;494450;494451;494452;494453;494454;494455;494456;494457;494458;494459;494460;494461;494462;494463;494464	494455			24	
YVDIGVLASDLQR	0	Unmodified	1447.7671	0.76709352	285	O15381	NVL	Nuclear valosin-containing protein-like	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		84.94	84.347	3	0.034535	74225	160511_QHF_FH_JSI11i_2	34.179	20.273			0.99377	0.97146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.99377	0.97146	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	10661000	4309500	6351600	0	0	0	0	0	0	10661000	4309500	6351600	0	0	0	60025	285	56550	366140	494465	494465			0	
YVDMSVK	1	Unmodified	840.40514	0.40514012	1612	P48047	ATP5O	ATP synthase subunit O, mitochondrial	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1.33	0.471	2	1									2		1	23.817	23.251	2	0.014965	20535	160511_QHF_FH_JSI12i_1	64.757	47.831			0.71042	0.7531	20.891	3	2	Plateau	NaN	NaN	NaN	0	0	Median	0.59712	0.71091	28.67	2	1	Median	NaN	NaN	NaN	0	0	Median	0.62756	0.65141	NaN	1	1	Median	1059800000	551350000	508470000	0	0	0	517730000	282100000	235630000	0	0	0	542090000	269250000	272840000	60026	1612	56551	366141;366142;366143	494466;494467;494468;494469	494466			4	
YVDPVISK	1	Unmodified	919.50148	0.50148335	2521	Q14244	MAP7	Ensconsin	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	1	0	4									1	1	1	1	29.418	28.823	2	0.0030985	25493	160511_QHF_FH_JSI11i_1	75.109	24.143			1.305	1.3073	40.991	4	1	Median	0.87909	0.72394	NaN	1	1	Median	1.5603	1.8538	NaN	1	0	Median	1.5479	1.5249	NaN	1	0	Median	1.1002	1.1207	NaN	1	0	Median	623940000	281930000	342010000	93415000	35783000	57632000	174550000	81865000	92685000	180010000	72662000	107340000	175970000	91619000	84351000	60027	2521	56552	366144;366145;366146;366147	494470;494471;494472;494473	494470			4	
YVDQGGNK	1	Unmodified	879.40865	0.4086456	1242	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	7									3	1	2	1	4.4508	4.0964	2	2.6195E-06	2125	160511_QHF_FH_JSI11i_1	142.64	111.92			1.1038	0.99918	88.598	7	1	Median	1.1032	0.89802	2.1572	3	0	Median	1.2033	1.3898	NaN	1	0	Median	3.2782	3.2025	164.72	2	1	Median	1.1455	1.2181	NaN	1	0	Median	3400000000	2026200000	1373800000	369830000	173210000	196620000	1221900000	696890000	525060000	828190000	522650000	305530000	980020000	633440000	346580000	60028	1242	56553	366148;366149;366150;366151;366152;366153;366154	494474;494475;494476;494477;494478;494479;494480;494481;494482	494474			9	
YVDQVLQLVYK	1	Unmodified	1366.7497	0.74965254	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0			By MS/MS		15	0								1				1		82.422	71.885	2	0.020818	38036	160513_QHF_FH_JSI11Kac_5	56.729	34.643			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1171200	0	1171200	0	0	0	0	0	0	1171200	0	1171200	0	0	0	60029	1005	56554	366155	494483	494483			1	
YVDSEGHLYTVPIR	0	Unmodified	1647.8257	0.82567103	2202	Q03135	CAV1	Caveolin-1	yes	yes	0	0	0	0		By MS/MS	By MS/MS		2	0		3									1	2		51.988	51.324	2	2.2765E-05	44381	160511_QHF_FH_JSI11i_2	100.55	91.6			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60030	2202	56555	366156;366157;366158	494484;494485;494486	494485			3	
YVDTPFGK	1	Unmodified	925.45453	0.45453316	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	8	6		1					1					1	1	41.538	35.716	2	0.0058377	30603	160511_QHF_FH_JSI12i_2	72.789	58.376			0.88586	0.9152	31.444	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1727	1.1431	NaN	1	0	Median	0.66918	0.73275	NaN	1	1	Median	230400000	150310000	80090000	0	0	0	0	0	0	5862900	3056000	2806800	224530000	147250000	77283000	60031	2354	56556	366159;366160	494487;494488	494487			2	
YVDTPFGKPSDALILGK	2	Unmodified	1819.972	0.97200092	2354	Q13126	MTAP	S-methyl-5'-thioadenosine phosphorylase	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.33	0.471		4	2							2	1	1	2	76.543	75.696	3	0.00024887	67392	160511_QHF_FH_JSI10i_2	50.387	43.659			1.0668	1.0959	16.395	6	1	Median	1.4266	1.2099	14.124	2	1	Median	0.89579	1.0969	NaN	1	0	Median	0.89222	0.9137	NaN	1	0	Median	1.098	1.1818	23.477	2	0	Median	599420000	265750000	333660000	90941000	35445000	55496000	114640000	50946000	63692000	157240000	65662000	91578000	236600000	113700000	122900000	60032	2354	56557	366161;366162;366163;366164;366165;366166	494489;494490;494491;494492;494493	494493			5	
YVDVLNPSGTQR	0	Unmodified	1347.6783	0.67827852	235	O15027	SEC16A	Protein transport protein Sec16A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.71	4.2		6					1			2	2	2	1	42.881	40.314	2	6.8575E-05	34495	160511_QHF_FH_JSI12i_2	95.573	84.744			0.9637	0.97425	89.237	6	5	Median	1.1329	0.94202	NaN	1	1	Median	0.54553	0.67375	56.915	2	2	Median	2.3243	2.2847	144.97	2	2	Median	1.1693	1.26	NaN	1	0	Median	160850000	82789000	78064000	35233000	14308000	20925000	52537000	29749000	22788000	40839000	22067000	18771000	32245000	16665000	15580000	60033	235	56558	366167;366168;366169;366170;366171;366172;366173	494494;494495;494496;494497;494498;494499;494500;494501	494495			8	
YVEAAWYPWWEQQGFFKPEYGRPNVSAANPR	1	Unmodified	3742.7746	0.77458552	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	2	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	87.06	79.139	4	1.0647E-105	45182	160513_QHF_FH_JSI10Kac_6	219.65	209.49			0.83362	1.0059	16.537	3	0	Plateau	0.91269	0.78246	NaN	1	0	Median	0.83362	1.0059	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.98655	1.0689	NaN	1	0	Median	452690000	236650000	216040000	105000000	48668000	56333000	285600000	155620000	129990000	0	0	0	62087000	32366000	29720000	60034	1283	56559	366174;366175;366176	494502;494503;494504;494505;494506;494507	494507			6	
YVECSALTQK	1	Unmodified	1197.57	0.56997362	1924	P60953	CDC42	Cell division control protein 42 homolog	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.6	8	2				1	1			2	3	3	4	26.024	24.111	2	1.0649E-06	20908	160511_QHF_FH_JSI11i_1	126.07	87.276			0.81887	0.74367	105.73	12	12	Median	0.91283	0.75525	90.653	2	2	Median	0.25688	0.30816	112.14	3	3	Median	0.21536	0.20851	109.34	3	3	Median	2.0566	2.1957	94.535	4	4	Median	1661600000	875840000	785810000	185620000	87034000	98581000	375420000	206930000	168490000	549950000	364430000	185520000	550670000	217440000	333230000	60035	1924	56560	366177;366178;366179;366180;366181;366182;366183;366184;366185;366186;366187;366188	494508;494509;494510;494511;494512;494513;494514;494515;494516;494517;494518;494519	494508			12	
YVELFLNSTAGASGGAYEHR	0	Unmodified	2141.0178	0.017781914	1383	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8	6.83		9	2						8	3	5	5	6	67.153	62.981	3	2.0568E-11	33259	160513_QHF_FH_JSI9Kac_6	163.79	150.75			1.0557	1.1368	94.638	19	15	Median	0.94462	0.8223	39.893	3	2	Median	1.1361	1.313	111.68	5	4	Median	2.4098	2.2567	117.62	5	4	Median	1.1068	1.2066	81.748	6	5	Median	1232500000	580610000	651930000	199460000	102750000	96713000	306780000	165930000	140850000	324980000	140240000	184740000	401320000	171690000	229630000	60036	1383	56561	366189;366190;366191;366192;366193;366194;366195;366196;366197;366198;366199;366200;366201;366202;366203;366204;366205;366206;366207	494520;494521;494522;494523;494524;494525;494526;494527;494528;494529;494530;494531;494532;494533;494534;494535;494536;494537;494538;494539;494540	494535			21	
YVENPSQVLNCER	0	Unmodified	1606.741	0.74095513	558	O75694	NUP155	Nuclear pore complex protein Nup155	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	5	5								2	3	2	3	46.903	46.081	2	4.3739E-10	41602	160511_QHF_FH_JSI11i_1	142.19	128.04			1.206	1.0203	35.267	5	2	Median	1.206	0.99052	NaN	1	1	Median	0.85698	1.0203	NaN	1	0	Median	1.0071	0.94735	NaN	1	0	Median	1.694	1.7793	27.564	2	1	Median	228650000	111240000	117410000	24123000	10357000	13766000	60286000	32979000	27307000	71601000	39470000	32131000	72638000	28433000	44204000	60037	558	56562	366208;366209;366210;366211;366212;366213;366214;366215;366216;366217	494541;494542;494543;494544;494545;494546;494547;494548;494549;494550;494551;494552	494542			12	
YVEPIEDVPCGNIVGLVGVDQFLVK	1	Unmodified	2758.4252	0.42515387	1033	P13639	EEF2	Elongation factor 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.71	0.795	7	4	3							2	4	4	4	102.03	101.95	2;3	7.0396E-107	92539	160511_QHF_FH_JSI12i_1	259.95	242.04			0.92872	1.0014	24.283	13	1	Median	1.0082	0.84321	0.69141	2	0	Median	0.90494	1.052	10.688	4	0	Median	0.86802	0.83009	6.3781	3	1	Median	1.3728	1.4127	23.3	4	0	Median	5554300000	2682700000	2871600000	518670000	239830000	278850000	1527600000	802400000	725170000	1669500000	897410000	772090000	1838600000	743040000	1095500000	60038	1033	56563	366218;366219;366220;366221;366222;366223;366224;366225;366226;366227;366228;366229;366230;366231	494553;494554;494555;494556;494557;494558;494559;494560;494561;494562;494563;494564;494565;494566;494567;494568;494569;494570;494571;494572;494573	494562			21	
YVEQLLTLFNR	0	Unmodified	1394.7558	0.75580056	3924	Q93034	CUL5	Cullin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	93.479	93.019	2	0.0053586	80244	160511_QHF_FH_JSI12i_2	63.283	52.132			1.1981	1.1272	175.15	4	4	Median	1.2155	1.0623	NaN	1	1	Median	0.054069	0.066622	NaN	1	1	Median	1.1809	1.1961	NaN	1	1	Median	3.7546	4.247	NaN	1	1	Median	51141000	26113000	25028000	12414000	4985200	7429200	9419800	8984700	435070	19795000	10241000	9553800	9511700	1902300	7609400	60039	3924	56564	366232;366233;366234;366235	494574;494575;494576;494577	494574			4	
YVETQAK	1	Unmodified	837.42323	0.42323303	5247	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.62	5.72	4	1				3				1	3	2	2	6.6424	3.7033	2	0.0042289	3899	160511_QHF_FH_JSI10i_1	99.384	61.013			0.88883	0.8576	50.837	8	2	Median	0.97836	0.7854	NaN	1	0	Median	0.97779	1.1604	40.409	3	1	Median	0.62558	0.60998	19.547	2	0	Median	1.0115	1.0819	82.529	2	1	Median	4269900000	1836100000	2433900000	930830000	295400000	635440000	1169400000	544950000	624450000	908460000	457940000	450520000	1261200000	537770000	723470000	60040	5247	56565	366236;366237;366238;366239;366240;366241;366242;366243	494578;494579;494580;494581;494582;494583;494584;494585;494586;494587;494588	494583			11	
YVEVYEINNEDVDALMK	1	Unmodified	2042.9507	0.95067313	2314	Q12849	GRSF1	G-rich sequence factor 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	6										2	1	3	85.044	84.687	2	1.6019E-12	77126	160511_QHF_FH_JSI12i_1	184.1	161.52			0.8289	1.1718	23.664	6	6	Linear	NaN	NaN	NaN	0	0	Median	0.89744	1.0307	12.555	2	2	Median	1.5005	1.4327	NaN	1	1	Median	0.96763	0.99525	30.624	3	3	Plateau	161810000	79546000	82264000	0	0	0	66464000	34431000	32033000	21551000	8713700	12837000	73796000	36401000	37394000	60041	2314	56566	366244;366245;366246;366247;366248;366249	494589;494590;494591;494592;494593;494594;494595	494592			7	
YVFASVDSKPPVISLQK	2	Unmodified	1877.0299	0.029850151	3189	Q6ZSZ5	ARHGEF18	Rho guanine nucleotide exchange factor 18	yes	yes	0	0	0	1				By MS/MS	3	0			1										1	72.127	71.83	3	0.053461	62173	160511_QHF_FH_JSI12i_3	30.575	19.52			0.78742	0.78826	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.78742	0.78826	NaN	1	1	Median	90310000	47473000	42837000	0	0	0	0	0	0	0	0	0	90310000	47473000	42837000	60042	3189	56567	366250	494596	494596			1	
YVFEAVIR	0	Unmodified	995.54402	0.54401687	4670	Q9H2C0	GAN	Gigaxonin	yes	yes	0	0	0	0	By matching	By matching	By MS/MS	By MS/MS	3	0			4							1	1	1	1	19.177	18.6	3	0.060251	15079	160511_QHF_FH_JSI12i_3	12.047	3.1342			1.0199	1.0556	11.923	4	0	Median	1.3145	1.0848	NaN	1	0	Median	0.89242	1.0342	NaN	1	0	Median	1.1655	1.0773	NaN	1	0	Median	0.82215	0.84236	NaN	1	0	Median	328460000	154890000	173580000	68651000	26547000	42104000	58283000	29667000	28616000	68923000	31735000	37187000	132610000	66938000	65670000	60043	4670	56568	366251;366252;366253;366254	494597	494597			1	
YVFLDPLAGAVTK	1	Unmodified	1392.7653	0.76530261	4917	Q9NQA3;C4AMC7;Q6VEQ5;A8K0Z3;A8MWX3	WASH6P;WASH3P;WASH2P;WASH1;WASH4P	WAS protein family homolog 6;Putative WAS protein family homolog 3;WAS protein family homolog 2;WAS protein family homolog 1;Putative WAS protein family homolog 4	yes	no	0	0	0	0		By MS/MS		By MS/MS	2	0		3									1		2	91.448	90.745	2	0.00042905	78302	160511_QHF_FH_JSI12i_2	93.096	68.32			0.78045	0.8392	85.29	3	3	Median	NaN	NaN	NaN	0	0	Median	0.29087	0.34529	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.1772	1.2628	57.788	2	2	Median	44144000	24725000	19419000	0	0	0	15533000	13173000	2360900	0	0	0	28610000	11552000	17058000	60044	4917	56569	366255;366256;366257	494598;494599;494600	494598			3	
YVFTDISYSIPHR	0	Unmodified	1596.7936	0.79364262	2104	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	5.6	5.2			4						1		2	2	1	70.195	68.125	2;3	1.4164E-05	59125	160511_QHF_FH_JSI12i_3	107.39	88.329			1.2581	1.2315	25.629	4	0	Median	NaN	NaN	NaN	0	0	Median	1.0038	1.1529	42.778	2	0	Median	1.3701	1.3204	NaN	1	0	Median	1.1553	1.1486	NaN	1	0	Median	393210000	179220000	213990000	0	0	0	70740000	42026000	28714000	170610000	67949000	102660000	151860000	69242000	82615000	60045	2104	56570	366258;366259;366260;366261;366262	494601;494602;494603;494604;494605;494606	494604			5	
YVGDMLAWLHQATASEK	1	Unmodified	1918.9247	0.92473315	5541	Q9Y2V7	COG6	Conserved oligomeric Golgi complex subunit 6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									2	1	93.51	93.503	3	9.6464E-06	80931	160511_QHF_FH_JSI12i_3	89.502	84.697			0.98385	1.0108	76.503	3	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.4256	1.3339	105.79	2	2	Median	0.98385	1.0108	NaN	1	0	Median	126610000	62881000	63725000	0	0	0	0	0	0	62294000	28338000	33956000	64312000	34543000	29769000	60046	5541	56571	366263;366264;366265	494607;494608;494609;494610;494611	494610			5	
YVGEGAR	0	Unmodified	750.36605	0.3660525	1449	P35998	PSMC2	26S protease regulatory subunit 7	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.33	4.78		4	1					1		2	1	2	1	5.9507	5.5214	2	0.0042289	3377	160511_QHF_FH_JSI11i_2	99.384	67.27			1.1016	1.0891	6.0885	5	0	Median	1.2358	1.0239	7.6842	2	0	Median	0.88401	1.0891	NaN	1	0	Median	1.1016	1.1317	NaN	1	0	Median	0.99934	1.1155	NaN	1	0	Median	1789800000	795340000	994470000	379300000	175670000	203630000	334150000	170020000	164130000	559010000	214840000	344170000	517370000	234820000	282540000	60047	1449	56572	366266;366267;366268;366269;366270;366271	494612;494613;494614;494615;494616;494617;494618	494616			7	
YVGESEANIRK	1	Unmodified	1264.6412	0.64116473	1586	P46459	NSF	Vesicle-fusing ATPase	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									3	1	14.787	14.802	2;3	0.0003399	12008	160511_QHF_FH_JSI11i_3	92.051	71.15			1.3264	1.3016	28.376	4	4	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5826	1.4904	34.433	3	3	Median	1.1116	1.1366	NaN	1	1	Median	279530000	130940000	148600000	0	0	0	0	0	0	263020000	125770000	137250000	16518000	5170600	11347000	60048	1586	56573	366272;366273;366274;366275	494619;494620;494621;494622	494620			4	
YVGETQPTGQIK	1	Unmodified	1319.6721	0.67213051	5606	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		23.631	23.482	2	0.0071401	20496	160511_QHF_FH_JSI11i_1	51.445	39.955			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60049	5606	56574	366276	494623	494623			1	
YVGFGNTPPPQK	1	Unmodified	1303.6561	0.65608651	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	36.294	34.95	2	0.0052069	29676	160511_QHF_FH_JSI12i_2	53.683	43.451			1.5028	1.6819	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5028	1.6819	NaN	1	0	Median	30317000	14014000	16303000	0	0	0	0	0	0	0	0	0	30317000	14014000	16303000	60050	3561	56575	366277	494624;494625	494625			2	
YVGFGNTPPPQKK	2	Unmodified	1431.751	0.75104953	3561	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				27.044	25.689	3	0.047735	20900	160511_QHF_FH_JSI9i_3	27.098	18.277			0.7561	0.61179	NaN	1	1	Median	0.7561	0.61179	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36452000	21338000	15115000	36452000	21338000	15115000	0	0	0	0	0	0	0	0	0	60051	3561	56576	366278	494626	494626			1	
YVGQNIGLSTCR	0	Unmodified	1366.6663	0.66633362	4844	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	yes	yes	0	0	0	0		By MS/MS			3	0			1								1			38.572	37.098	2	0.0046962	30928	160511_QHF_FH_JSI10i_3	55.567	43.719			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60052	4844	56577	366279	494627	494627			1	
YVGVSSDSVGGFR	0	Unmodified	1328.6361	0.63607935	2558	Q14677	CLINT1	Clathrin interactor 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.25	0.661	1	4	3							2	3	1	2	46.429	45.551	2	5.3522E-05	40028	160511_QHF_FH_JSI10i_2	110.14	98.288			1.2793	1.5232	27.887	7	5	Median	1.2243	1.0432	NaN	1	1	Median	1.3032	1.5483	5.151	3	2	Median	0.97795	1.0038	NaN	1	1	Median	1.6381	1.743	35.775	2	1	Median	848140000	400420000	447720000	172550000	94766000	77786000	239780000	114470000	125300000	225740000	101250000	124490000	210070000	89923000	120150000	60053	2558	56578	366280;366281;366282;366283;366284;366285;366286;366287	494628;494629;494630;494631;494632;494633;494634;494635;494636	494635			9	
YVHAFESNNFIYFLTVQR	0	Unmodified	2247.1113	0.11128837	907	P08581	MET	Hepatocyte growth factor receptor	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									5	2	1	1	1	88.357	80.002	3	1.9568E-17	46145	160513_QHF_FH_JSI10Kac_6	140.46	117.36			1.2006	1.129	14.799	5	3	Median	1.5279	1.2869	20.586	2	2	Median	0.95141	1.1478	NaN	1	0	Median	1.2006	1.129	NaN	1	0	Median	0.95741	0.99709	NaN	1	1	Median	820790000	369440000	451350000	273600000	99131000	174470000	286570000	149120000	137450000	148330000	73071000	75259000	112290000	48116000	64169000	60054	907	56579	366288;366289;366290;366291;366292	494637;494638;494639;494640;494641;494642	494642			6	
YVHGIAVHWYLDFLAPAK	1	Unmodified	2099.0993	0.09926712	802	P04062	GBA	Glucosylceramidase	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			85.947	80.246	4	0.0012884	45046	160513_QHF_FH_JSI10Kac_6	53.168	44.349			0.56042	0.66949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.56042	0.66949	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	43240000	31694000	11546000	0	0	0	43240000	31694000	11546000	0	0	0	0	0	0	60055	802	56580	366293	494643	494643			1	
YVHLFPK	1	Unmodified	902.50142	0.50142377	552	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.24	4.32		5	10						2	5	4	4	4	36.215	34.832	2;3	0.001511	29338	160511_QHF_FH_JSI12i_3	86.113	51.305			0.66161	0.67495	131.17	15	11	Median	0.93065	0.77055	104.07	4	3	Median	0.64219	0.76797	114.74	3	2	Median	2.5795	0.58054	117.63	4	3	Linear	1.047	1.1071	198.18	4	3	Median	2102500000	852960000	1249500000	452660000	202560000	250090000	380150000	205470000	174670000	605190000	227780000	377410000	664510000	217150000	447370000	60056	552	56581	366294;366295;366296;366297;366298;366299;366300;366301;366302;366303;366304;366305;366306;366307;366308;366309;366310	494644;494645;494646;494647;494648;494649;494650;494651;494652;494653;494654;494655;494656;494657;494658;494659;494660;494661;494662;494663;494664;494665;494666;494667;494668;494669;494670;494671	494668			28	
YVIDYYDGGEVNK	1	Unmodified	1533.6987	0.69873919	1810	P53701	HCCS	Cytochrome c-type heme lyase	yes	yes	0	0	0	0		By MS/MS		By MS/MS	1	0	3										2		1	53.203	52.669	2	3.2928E-10	47806	160511_QHF_FH_JSI12i_1	145.46	128.79			2.172	2.4016	46.093	2	1	Median	NaN	NaN	NaN	0	0	Median	2.8759	3.327	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.6404	1.7336	NaN	1	0	Median	499190000	161850000	337350000	0	0	0	204780000	48050000	156730000	0	0	0	294410000	113800000	180620000	60057	1810	56582	366311;366312;366313	494672;494673;494674;494675	494672			4	
YVIHTVGPIAYGEPSASQAAELR	0	Unmodified	2428.2387	0.23867373	4351	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.43	0.495		4	3							1	2	2	2	69.105	68.339	3	9.2158E-18	60928	160511_QHF_FH_JSI11i_3	139.69	132.41			0.96057	0.96486	10.372	7	2	Median	0.99533	0.83997	NaN	1	0	Median	0.87482	1.0447	9.0779	2	2	Median	0.9162	0.89611	9.9233	2	0	Median	0.94353	0.99676	4.6	2	0	Median	977790000	480530000	497260000	72155000	29435000	42720000	143410000	84019000	59392000	464810000	224360000	240440000	297420000	142720000	154700000	60058	4351	56583	366314;366315;366316;366317;366318;366319;366320	494676;494677;494678;494679;494680;494681;494682;494683;494684;494685;494686;494687	494677			12	
YVITHLNR	0	Unmodified	1014.5611	0.56106391	2341	Q13017	ARHGAP5	Rho GTPase-activating protein 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS			3	0			2							1	1			24.731	23.433	3	0.031489	19354	160511_QHF_FH_JSI10i_3	28.209	17.978			0.60369	0.57072	1.5975	2	0	Median	0.7007	0.56431	NaN	1	0	Median	0.52011	0.57721	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38862000	23103000	15759000	18126000	9346600	8779400	20736000	13757000	6979500	0	0	0	0	0	0	60059	2341	56584	366321;366322	494688;494689	494688			2	
YVIWSADMSHVALLAK	1	Unmodified	1802.9389	0.93892665	1805	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.54	6.7		6	2						5	2	4	4	3	88.592	84.846	2;3	1.7155E-74	43767	160513_QHF_FH_JSI10Kac_6	240.6	202.58			0.99241	1.0023	16.721	11	1	Median	1.2299	1.0535	7.6105	2	0	Median	0.67511	0.80735	16.585	3	1	Plateau	0.99513	1.0044	20.324	4	0	Median	0.85543	0.93784	25.912	2	0	Median	1814700000	1029500000	785150000	307100000	169860000	137240000	833480000	490920000	342560000	421080000	225120000	195960000	253020000	143630000	109390000	60060	1805	56585	366323;366324;366325;366326;366327;366328;366329;366330;366331;366332;366333;366334;366335	494690;494691;494692;494693;494694;494695;494696;494697;494698;494699;494700;494701;494702;494703;494704;494705;494706	494705			17	
YVIYIER	0	Unmodified	954.51747	0.51746776	1949;5450	P61254;Q9UNX3	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.62	6.35	1	4	4				3	5	4	5	6	5	5	54.548	48.313	2	1.9732E-11	26061	160513_QHF_FH_JSI11Kac_6	154.11	125.58			1.0128	1.0437	10.426	21	1	Median	1.2159	1.0196	11.817	5	0	Median	0.90186	1.0493	11.307	6	1	Median	1.089	1.1026	8.3798	5	0	Median	0.94045	1.0406	11.651	5	0	Median	14868000000	6962100000	7906000000	3484000000	1552100000	1931900000	3672800000	1878100000	1794800000	4754800000	2001200000	2753600000	2956500000	1530800000	1425700000	60061	1949;5450	56586	366336;366337;366338;366339;366340;366341;366342;366343;366344;366345;366346;366347;366348;366349;366350;366351;366352;366353;366354;366355;366356	494707;494708;494709;494710;494711;494712;494713;494714;494715;494716;494717;494718;494719;494720;494721;494722;494723;494724;494725;494726;494727;494728;494729;494730;494731;494732;494733;494734;494735;494736;494737;494738;494739;494740;494741;494742;494743;494744;494745;494746	494718			40	
YVKALFR	1	Unmodified	895.52797	0.52797287	611	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		40.917	40.917	3	0.047493	36048	160511_QHF_FH_JSI11i_3	33.516	5.0034			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	18107000	18107000	0	0	0	0	0	0	0	18107000	18107000	0	0	0	0	60062	611	56587	366357	494747	494747			1	
YVKPTEPVTDYR	1	Unmodified	1466.7405	0.74054442	4602	Q9GZR2	REXO4	RNA exonuclease 4	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS		2.67	0.471		1	2							1	1	1		27.168	26.651	3	0.025304	21966	160511_QHF_FH_JSI10i_3	32.43	25.06			2.4257	2.1291	9.8803	2	2	Median	2.7499	2.2832	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1397	1.9854	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	124630000	49886000	74745000	25468000	7544400	17923000	0	0	0	99163000	42341000	56821000	0	0	0	60063	4602	56588	366358;366359;366360	494748;494749;494750	494749			3	
YVLALVK	1	Unmodified	804.51093	0.51092582	2956	Q5T8P6	RBM26	RNA-binding protein 26	yes	yes	0	0	0	0		By MS/MS	By MS/MS		9	7		1							1		1	1		60.876	55.589	2	0.023499	30226	160513_QHF_FH_JSI11Kac_6	77.72	51.893			1.7486	1.8909	37.929	2	2	Median	NaN	NaN	NaN	0	0	Median	1.1689	1.4461	NaN	1	1	Median	2.6157	2.4725	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	76852000	34434000	42418000	0	0	0	47730000	24621000	23109000	29121000	9812400	19309000	0	0	0	60064	2956	56589	366361;366362	494751;494752	494751			2	
YVLCTAPR	0	Unmodified	978.49569	0.49568646	1254	P25205	MCM3	DNA replication licensing factor MCM3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	29.208	28.299	2	0.00024019	23846	160511_QHF_FH_JSI11i_2	117.18	86.615			0.71569	1.2477	34.885	4	0	Linear	1.5529	1.3309	NaN	1	0	Median	0.95982	1.1697	NaN	1	0	Median	0.71175	0.72033	NaN	1	0	Median	1.4189	1.6383	NaN	1	0	Median	582420000	274180000	308240000	76953000	34267000	42685000	138500000	65267000	73232000	232290000	115930000	116360000	134690000	58719000	75967000	60065	1254	56590	366363;366364;366365;366366	494753;494754;494755;494756;494757;494758	494756			6	
YVLDPPAR	0	Unmodified	929.49707	0.49706667	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		1	2	34.505	33.631	2	0.0025091	28576	160511_QHF_FH_JSI12i_2	77.741	51.632			0.99524	1.0607	11.834	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1271	1.1533	NaN	1	0	Median	0.87879	0.97557	NaN	1	0	Median	326720000	204380000	122350000	0	0	0	0	0	0	221970000	147800000	74173000	104750000	56581000	48172000	60066	1283	56591	366367;366368;366369;366370	494759;494760;494761	494759			3	
YVLDPPARR	0	Unmodified	1085.5982	0.5981777	1283	P26640	VARS	Valine--tRNA ligase	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				25.899	24.559	3	0.052165	19865	160511_QHF_FH_JSI9i_3	19.315	15.728			1.3009	1.0551	NaN	1	1	Median	1.3009	1.0551	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26058000	13626000	12432000	26058000	13626000	12432000	0	0	0	0	0	0	0	0	0	60067	1283	56592	366371	494762	494762			1	
YVLEDGPEEDRK	1	Unmodified	1448.6783	0.6783381	2712	Q15813	TBCE	Tubulin-specific chaperone E	yes	yes	0	0	0	1	By matching		By matching	By MS/MS	2	0		3								1		1	1	26.011	25.124	3	0.0065365	20886	160511_QHF_FH_JSI12i_2	40.725	40.725			1.0716	0.93192	19.299	3	0	Median	1.0716	0.93192	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.79022	0.80055	NaN	1	0	Median	1.0764	1.1744	NaN	1	0	Median	135760000	78651000	57113000	33796000	19276000	14520000	0	0	0	63022000	39404000	23618000	38946000	19972000	18975000	60068	2712	56593	366372;366373;366374	494763	494763			1	
YVLENHPGTNSNYQMHLLK	1	Unmodified	2257.095	0.094986378	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.75	0.433		2	6							2	1	3	2	52.405	51.892	3;4	2.7721E-14	45581	160511_QHF_FH_JSI11i_3	143.39	127.97			0.94335	0.90142	29.406	8	2	Median	1.01	0.86473	8.3839	2	0	Median	0.83579	0.97102	NaN	1	0	Median	0.9391	0.88557	51.644	3	2	Median	0.9453	0.96645	14.771	2	0	Median	1591000000	738620000	852380000	80131000	37871000	42261000	122900000	60773000	62132000	698580000	347150000	351430000	689380000	292830000	396550000	60069	2927	56594	366375;366376;366377;366378;366379;366380;366381;366382	494764;494765;494766;494767;494768;494769;494770;494771;494772;494773;494774;494775	494766			12	
YVLEPEISFTSDNSFAK	1	Unmodified	1945.9309	0.93092397	5135	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.33	0.471	8	4								2	3	4	3	86.444	86.023	2;3	3.0228E-08	78089	160511_QHF_FH_JSI10i_1	132.59	109.71			1.0683	1.0875	29.423	12	10	Median	1.0533	0.91384	43.772	2	2	Median	0.78193	0.87798	15.201	3	2	Median	1.247	1.1995	22.408	4	3	Median	1.569	1.6554	34.735	3	3	Plateau	311450000	152280000	159170000	27325000	11713000	15613000	107210000	58559000	48647000	122950000	54980000	67968000	53973000	27026000	26946000	60070	5135	56595	366383;366384;366385;366386;366387;366388;366389;366390;366391;366392;366393;366394	494776;494777;494778;494779;494780;494781;494782;494783;494784;494785;494786;494787;494788	494785			13	
YVLGDTAMQK	1	Oxidation (M)	1140.5485	0.5485099	5	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	yes	yes	0	0	1	0		By MS/MS		By MS/MS	2	0		3									2		1	32.483	31.349	2	0.0035973	27546	160511_QHF_FH_JSI10i_2	82.671	53.522			1.0855	1.2789	74.138	2	2	Median	NaN	NaN	NaN	0	0	Median	0.62417	0.75713	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.8877	2.1603	NaN	1	1	Median	89189000	49350000	39839000	0	0	0	42096000	26487000	15609000	0	0	0	47093000	22863000	24230000	60071	5	56596	366395;366396;366397	494789;494790;494791	494790		2	3	
YVLGMQELFR	0	Unmodified	1254.6431	0.64307898	4132	Q96J01	THOC3	THO complex subunit 3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		3									1	1	1	85.115	84.371	2	5.0097E-06	72953	160511_QHF_FH_JSI12i_2	109.21	99.303			2.1552	2.4048	20.775	3	2	Median	NaN	NaN	NaN	0	0	Median	2.2697	2.8254	NaN	1	1	Median	1.8624	1.8709	NaN	1	1	Median	2.1552	2.4048	NaN	1	0	Median	342760000	106530000	236230000	0	0	0	103030000	32513000	70519000	132140000	40203000	91940000	107590000	33816000	73771000	60072	4132	56597	366398;366399;366400	494792;494793;494794;494795	494792			4	
YVLGQLVGLNSPNSILK	1	Unmodified	1814.0302	0.030184502	1408	P33981	TTK	Dual specificity protein kinase TTK	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		3	0			5							3	1	1		98.181	97.927	2;3	1.4089E-06	79431	160511_QHF_FH_JSI9i_3	118.48	113.1			0.77059	0.65234	12.172	5	3	Median	0.83289	0.69098	3.159	3	3	Plateau	0.51163	0.60311	NaN	1	0	Median	0.5251	0.50641	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	69020000	37946000	31073000	44351000	23339000	21012000	15207000	9518600	5688700	9461700	5088900	4372800	0	0	0	60073	1408	56598	366401;366402;366403;366404;366405	494796;494797;494798;494799;494800;494801	494799			5	
YVLGYKQTLK	2	Acetyl (K)	1253.702	0.70197407	2033	P62888	RPL30	60S ribosomal protein L30	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		64.367	54.682	2	0.00045916	29686	160513_QHF_FH_JSI11Kac_6	91.867	72.801			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	25111000	25111000	0	0	0	0	0	0	0	25111000	25111000	0	0	0	0	60074	2033	56599	366406	494802	494802	2074		1	
YVLHCQGTEEEK	1	Unmodified	1491.6664	0.6663932	2010	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2.5	0.5		4	4								1	3	4	16.493	16.358	2;3	1.7249E-06	13083	160511_QHF_FH_JSI12i_3	118.87	99.261			1.2794	1.4099	46.793	6	6	Median	NaN	NaN	NaN	0	0	Median	1.3976	1.7028	NaN	1	1	Median	0.96448	0.93717	31.057	2	2	Median	1.8891	1.9485	48.694	3	3	Median	353830000	130010000	223810000	0	0	0	21123000	7257900	13865000	106970000	44546000	62427000	225730000	78209000	147520000	60075	2010	56600	366407;366408;366409;366410;366411;366412;366413;366414	494803;494804;494805;494806;494807;494808;494809;494810	494809			8	
YVLKPATEGK	2	Acetyl (K)	1146.6285	0.62847478	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	14	0							5				2	2	1	44.848	34.665	2	0.0051794	20262	160513_QHF_FH_JSI12Kac_4	68.735	40.336			1.0049	1.0647	205.65	3	2	Median	NaN	NaN	NaN	0	0	Median	0.063482	0.073665	NaN	1	1	Median	4.2614	4.204	NaN	1	1	Median	1.0049	1.0647	NaN	1	0	Median	14798000	8329300	6468200	0	0	0	3714400	2328900	1385500	6092900	3602300	2490600	4990300	2398100	2592200	60076	5035	56601	366415;366416;366417;366418;366419	494811;494812;494813;494814;494815;494816	494816	3300		6	
YVLKPATEGK	2	Unmodified	1104.6179	0.61791009	5035	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	yes	yes	0	0	0	1				By MS/MS	3	0			2										2	18.597	18.623	2;3	0.01691	15010	160511_QHF_FH_JSI12i_3	66.692	53.113			4.0101	4.1302	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4.0101	4.1302	NaN	1	1	Median	99387000	27805000	71581000	0	0	0	0	0	0	0	0	0	99387000	27805000	71581000	60077	5035	56601	366420;366421	494817;494818	494818			2	
YVLLSIR	0	Unmodified	862.52764	0.52763852	1615	P48147	PREP	Prolyl endopeptidase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	9.5	6.5			3						3		2	2	2	62.568	57.691	2	0.032973	49305	160511_QHF_FH_JSI12i_3	50.855	40.027			0.9353	0.9753	22.046	6	0	Median	NaN	NaN	NaN	0	0	Median	0.71666	0.84812	19.682	2	0	Median	1.0908	1.0067	4.3978	2	0	Median	1.043	1.103	36.213	2	0	Median	273320000	132530000	140800000	0	0	0	70325000	41005000	29321000	112770000	48763000	64008000	90229000	42761000	47469000	60078	1615	56602	366422;366423;366424;366425;366426;366427	494819;494820;494821	494820			3	
YVLNFLEVHDK	1	Unmodified	1375.7136	0.71360139	2279	Q08AF3	SLFN5	Schlafen family member 5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.29	0.452		5	2							1	2	2	2	70.1	69.433	3	6.4674E-05	60714	160511_QHF_FH_JSI11i_2	69.451	63.218			1.1626	1.1475	69.303	7	4	Median	1.323	1.1475	NaN	1	0	Median	0.69625	0.83783	69.664	2	2	Median	1.619	1.575	58.4	2	1	Median	1.6418	1.7464	118.58	2	1	Median	150220000	68931000	81290000	14646000	5863500	8782300	37680000	20493000	17187000	58950000	24547000	34402000	38945000	18026000	20919000	60079	2279	56603	366428;366429;366430;366431;366432;366433;366434	494822;494823;494824;494825;494826;494827;494828;494829;494830	494826			9	
YVLPSQTLNSQGSSQAQETHPLLGEWK	1	Unmodified	2997.4832	0.48321411	5622	Q9Y4D7	PLXND1	Plexin-D1	yes	yes	0	0	0	0			By MS/MS		3	0			1									1		74.968	74.968	3	9.3356E-06	66837	160511_QHF_FH_JSI11i_3	52.79	47.257			1.0094	0.95654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0094	0.95654	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	23945000	14155000	9789800	0	0	0	0	0	0	23945000	14155000	9789800	0	0	0	60080	5622	56604	366435	494831;494832;494833	494831			3	
YVLQDGSPYMR	0	Unmodified	1327.6231	0.62307182	3087	Q6P158	DHX57	Putative ATP-dependent RNA helicase DHX57	yes	yes	0	0	0	0	By MS/MS			By MS/MS	2	0		2								1			1	48.632	47.235	2	0.0042787	40475	160511_QHF_FH_JSI12i_2	65.347	53.857			2.0505	2.2267	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2.0505	2.2267	NaN	1	1	Median	57516000	19176000	38340000	0	0	0	0	0	0	0	0	0	57516000	19176000	38340000	60081	3087	56605	366436;366437	494834;494835	494834			2	
YVLVAGITPTPLGEGK	1	Unmodified	1613.9029	0.90285872	3141	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.17	6.26	2	6						4		2	3	5	2	80.605	76.651	2;3	4.7776E-17	35650	160513_QHF_FH_JSI10Kac_5	146.16	106.25			0.95852	0.97159	27.739	12	3	Median	0.88509	0.74989	8.2855	2	0	Median	0.88566	1.0018	12.312	3	0	Median	1.1574	1.136	29.068	5	3	Median	1.0705	1.1755	49.192	2	0	Median	192970000	90274000	102700000	26166000	13399000	12767000	44532000	21021000	23511000	83891000	38763000	45128000	38385000	17091000	21294000	60082	3141	56606	366438;366439;366440;366441;366442;366443;366444;366445;366446;366447;366448;366449	494836;494837;494838;494839;494840;494841;494842;494843;494844;494845;494846;494847;494848;494849;494850;494851;494852;494853	494853			18	
YVMIFKK	2	Unmodified	927.5252	0.52519568	518	O75391	SPAG7	Sperm-associated antigen 7	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.86	4.55			6						1	2	1	2	2	39.858	38.067	3	0.011534	31245	160511_QHF_FH_JSI9i_3	47.067	27.431			0.31813	0.28103	145.18	7	7	Median	1.4438	1.1981	214.02	2	2	Median	0.13525	0.15226	NaN	1	1	Median	0.93759	0.86983	159.78	2	2	Median	0.68195	0.6933	158.54	2	2	Median	231760000	120250000	111510000	42155000	21104000	21051000	22980000	17948000	5032800	66097000	30989000	35108000	100530000	50211000	50317000	60083	518	56607	366450;366451;366452;366453;366454;366455;366456	494854;494855;494856;494857;494858;494859;494860	494857			7	
YVMSWIK	1	Unmodified	925.47316	0.47316011	1712	P50579	METAP2	Methionine aminopeptidase 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	62.91	58.914	2	0.009353	51875	160511_QHF_FH_JSI11i_3	83.614	71.709			1.0034	1.023	15.48	10	2	Median	1.2025	1.02	9.5969	2	0	Median	0.86337	1.0287	19.415	2	0	Median	1.0272	1.001	15.615	3	1	Median	0.94605	1.0454	23.11	3	1	Median	970000000	464390000	505610000	98652000	41242000	57410000	152350000	70882000	81472000	389730000	185570000	204160000	329270000	166700000	162570000	60084	1712	56608	366457;366458;366459;366460;366461;366462;366463;366464;366465;366466	494861;494862;494863;494864;494865;494866;494867;494868;494869;494870;494871	494861			11	
YVMTTTTLER	0	Unmodified	1213.6013	0.60127375	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.67	6.6	4	4	2				2	4	2	5	6	4	3	44.186	39.198	2	2.9868E-06	21028	160513_QHF_FH_JSI9Kac_5	119.27	109.29			1.0795	1.1438	12.417	18	0	Median	1.3116	1.1307	16.45	5	0	Median	0.9601	1.3316	13.076	6	0	Linear	1.1395	1.1438	11.989	4	0	Median	1.0853	1.2058	10.037	3	0	Median	4140100000	1925000000	2215100000	743650000	298060000	445590000	1093100000	606880000	486220000	1410600000	605260000	805360000	892730000	414760000	477970000	60085	832	56609	366467;366468;366469;366470;366471;366472;366473;366474;366475;366476;366477;366478;366479;366480;366481;366482;366483;366484	494872;494873;494874;494875;494876;494877;494878;494879;494880;494881;494882;494883;494884;494885;494886;494887;494888;494889;494890;494891;494892;494893;494894;494895;494896;494897;494898;494899	494880			28	
YVMTTTTLER	0	Oxidation (M)	1229.5962	0.59618837	832	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.8	0.433							2	6		1	2	3	2	33.077	23.607	2	0.0042084	14168	160513_QHF_FH_JSI11Kac_5	61.962	46.523			0.93677	0.96184	8.6811	8	0	Median	1.2172	1.0173	NaN	1	0	Median	0.79791	0.952	6.9774	2	0	Median	0.93204	0.91808	4.0425	3	0	Median	1.019	1.0799	4.4175	2	0	Median	29033000	15104000	13929000	3527600	1943500	1584100	6380200	3534700	2845500	14827000	7499300	7327700	4298000	2126700	2171300	60086	832	56609	366485;366486;366487;366488;366489;366490;366491;366492	494900;494901;494902;494903;494904;494905;494906	494906		352	7	
YVMVVYK	1	Unmodified	900.47791	0.47791114	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.9	4.51		1						3	4	3	2	2	1	50.27	41.517	2	0.0037406	21281	160513_QHF_FH_JSI10Kac_5	99.511	95.657			0.94339	0.93899	69.628	8	1	Median	1.0837	0.93086	114.26	3	1	Median	0.77206	0.92253	2.8834	2	0	Median	1.1058	1.0828	10.991	2	0	Median	0.87471	0.93646	NaN	1	0	Median	543320000	338100000	205220000	286530000	209700000	76827000	117010000	63081000	53929000	111210000	49418000	61792000	28575000	15899000	12676000	60087	4337	56610	366493;366494;366495;366496;366497;366498;366499;366500	494907;494908;494909;494910;494911;494912;494913;494914;494915;494916;494917;494918	494912			12	
YVMVVYKR	1	Unmodified	1056.579	0.57902216	4337	Q9BPX3	NCAPG	Condensin complex subunit 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	16	0									4	1	2		1	39.801	30.898	2;3	0.019963	16236	160513_QHF_FH_JSI12Kac_6	42.109	30.576			1.0043	1.0182	25.844	4	1	Median	1.2998	1.1307	NaN	1	0	Median	0.7481	0.88712	4.6792	2	0	Median	NaN	NaN	NaN	0	0	Median	1.4255	1.5242	NaN	1	1	Median	76346000	39766000	36580000	13947000	5331700	8615800	54921000	31358000	23563000	0	0	0	7477400	3076300	4401000	60088	4337	56611	366501;366502;366503;366504	494919;494920;494921;494922	494920			2	
YVNGSTYQR	0	Unmodified	1086.5094	0.50942227	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	10.706	10.212	2	2.8574E-06	7701	160511_QHF_FH_JSI11i_2	124.98	101.01			1.0054	1.0598	5.1968	4	0	Median	1.0918	0.98041	NaN	1	0	Median	0.90807	1.1071	NaN	1	0	Median	1.0841	1.0753	NaN	1	0	Median	0.9324	1.0445	NaN	1	0	Median	286020000	131560000	154460000	46784000	22059000	24725000	51303000	25476000	25827000	100870000	39658000	61215000	87058000	44368000	42690000	60089	3101	56612	366505;366506;366507;366508	494923;494924;494925;494926;494927;494928;494929;494930	494927			8	
YVNLEEADNQTLDSYRNEIAYLNK	1	Unmodified	2874.3672	0.3671813	1408	P33981	TTK	Dual specificity protein kinase TTK	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2.5	0.5		2	2							1		2	1	86.144	85.917	3	2.6333E-09	74541	160511_QHF_FH_JSI12i_3	98.132	87.589			1.1186	1.0632	74.856	3	2	Median	0.42771	0.3687	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.1186	1.0632	NaN	1	1	Median	1.4909	1.5655	NaN	1	1	Median	49125000	19125000	30001000	19790000	10885000	8904200	0	0	0	11222000	3089000	8132900	18114000	5150100	12964000	60090	1408	56613	366509;366510;366511;366512	494931;494932;494933;494934;494935	494935			5	
YVNMQDPEMDMK	1	Unmodified	1499.6095	0.60947195	108	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	5									1	1	2	1	49.546	48.919	2	2.1051E-06	43972	160511_QHF_FH_JSI10i_1	125.74	70.191			0.88752	0.95142	20.411	5	3	Median	1.1147	0.91718	NaN	1	1	Median	0.82764	0.99675	NaN	1	0	Median	0.84284	0.82026	36.82	2	2	Median	0.88752	0.95142	NaN	1	0	Median	1267200000	629280000	637910000	219200000	107080000	112120000	268790000	143550000	125250000	499940000	277830000	222110000	279260000	100820000	178440000	60091	108	56614	366513;366514;366515;366516;366517	494936;494937;494938;494939;494940;494941;494942;494943	494941			8	
YVNSIWDLLK	1	Unmodified	1249.6707	0.67067394	2455	Q13618	CUL3	Cullin-3	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	101.08	100.88	2	3.0365E-05	86809	160511_QHF_FH_JSI12i_2	96.668	88.249			0.83021	0.93855	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83021	0.93855	NaN	1	0	Median	36196000	20418000	15778000	0	0	0	0	0	0	0	0	0	36196000	20418000	15778000	60092	2455	56615	366518	494944;494945	494945			2	
YVNYIKTSEVVR	1	Acetyl (K)	1511.7984	0.79839365	4892	Q9NPA0	EMC7	ER membrane protein complex subunit 7	yes	yes	1	0	0	1			By MS/MS		15	0								1				1		65.595	54.679	2	0.0012284	29620	160513_QHF_FH_JSI11Kac_5	83	74.046			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2450100	2450100	0	0	0	0	0	0	0	2450100	2450100	0	0	0	0	60093	4892	56616	366519	494946	494946	3257		1	
YVPGSASMGTTMAGVDPFTGNSAYR	0	Unmodified	2536.1363	0.13625884	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.17	0.373		5	1							2	1	2	1	82.802	82.201	2;3	3.0796E-09	73499	160511_QHF_FH_JSI11i_3	77.689	74.545			1.3476	1.1949	35.549	4	3	Median	1.539	1.2865	NaN	1	1	Median	0.67203	0.80271	NaN	1	1	Median	1.18	1.1098	NaN	1	0	Median	1.6894	1.8913	NaN	1	1	Median	84996000	34681000	50316000	8086800	1892800	6193900	7218200	2483600	4734600	58120000	28117000	30002000	11572000	2186700	9385300	60094	5495	56617	366520;366521;366522;366523;366524;366525	494947;494948;494949;494950;494951;494952;494953	494947			7	
YVPGSSGSSNTLPTADPFTGAGR	0	Unmodified	2238.0553	0.055289633	5495	Q9Y263	PLAA	Phospholipase A-2-activating protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.62	0.484	3	5								2	2	2	2	67.976	67.213	2;3	1.6251E-10	58825	160511_QHF_FH_JSI11i_2	127.88	120.68			1.0453	1.0918	14.016	8	1	Median	1.2175	1.0139	6.6928	2	1	Median	1.0144	1.2234	1.2107	2	0	Median	1.1517	1.1482	27.793	2	0	Median	0.96438	1.043	10.248	2	0	Median	357540000	182350000	175190000	79398000	36999000	42399000	87800000	44140000	43660000	108510000	57535000	50973000	81836000	43674000	38162000	60095	5495	56618	366526;366527;366528;366529;366530;366531;366532;366533	494954;494955;494956;494957;494958;494959;494960;494961;494962;494963;494964;494965;494966;494967	494963			14	
YVPKYVPLADVK	2	Acetyl (K)	1432.7966	0.79660274	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	15	0								3			1	1	1	79.583	69.104	2	0.0011081	36642	160513_QHF_FH_JSI11Kac_5	82.417	67.273			0.43245	0.78528	36.411	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.69314	0.82696	NaN	1	0	Median	0.43188	0.42959	NaN	1	0	Median	0.72484	0.78528	NaN	1	0	Median	30916000	20012000	10904000	0	0	0	3771700	2128800	1642900	24237000	16427000	7810500	2906700	1456100	1450600	60096	1527	56619	366534;366535;366536	494968;494969;494970;494971	494969	1548		4	
YVPLADVK	1	Unmodified	903.50657	0.50656873	1527	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.59	5.61	4	4	4				4	1		2	4	6	5	44.157	41.865	2	0.0015998	35875	160511_QHF_FH_JSI11i_2	87.323	26.535			0.81881	0.8142	21.716	13	2	Median	1.0128	0.84393	5.3543	2	0	Median	0.68033	0.81418	21.24	3	0	Median	0.8292	0.8406	29.303	4	1	Median	0.78663	0.83845	20.608	4	1	Median	3608400000	1768600000	1839800000	561310000	233830000	327480000	815420000	475110000	340310000	1317300000	627860000	689420000	914390000	431790000	482590000	60097	1527	56620	366537;366538;366539;366540;366541;366542;366543;366544;366545;366546;366547;366548;366549;366550;366551;366552;366553	494972;494973;494974;494975;494976;494977;494978;494979;494980;494981;494982;494983;494984;494985;494986;494987;494988;494989;494990;494991;494992;494993;494994;494995;494996	494990			25	
YVPPAAGR	0	Unmodified	829.44464	0.44463717	512	O75369	FLNB	Filamin-B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0.816	3	3	3							2	2	4	1	14.405	14.116	2	0.00811	11578	160511_QHF_FH_JSI9i_2	57.463	43.051			1.0942	1.0999	11.309	6	1	Median	1.2054	1.0244	NaN	1	0	Median	0.88913	1.071	18.083	2	0	Median	1.1623	1.1187	13.861	2	1	Median	1.1797	1.1809	NaN	1	0	Median	1117600000	546130000	571440000	202060000	90990000	111070000	308130000	158530000	149600000	394170000	192040000	202140000	213200000	104570000	108630000	60098	512	56621	366554;366555;366556;366557;366558;366559;366560;366561;366562	494997;494998;494999;495000;495001;495002;495003;495004;495005	495001			9	
YVPPSLR	0	Unmodified	830.46504	0.46503826	570	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.8	0.4		1	4							1	2	1	1	30.377	29.627	2	0.0099713	24648	160511_QHF_FH_JSI10i_3	76.847	59.92			0.84097	0.91551	6.6207	5	0	Median	1.1836	0.94615	NaN	1	0	Median	0.74315	0.87506	10.384	2	0	Median	0.9875	0.91551	NaN	1	0	Median	0.84097	0.85427	NaN	1	0	Median	1547000000	762930000	784060000	599520000	251500000	348020000	586840000	340070000	246770000	222370000	101180000	121190000	138260000	70182000	68075000	60099	570	56622	366563;366564;366565;366566;366567	495006;495007;495008;495009;495010;495011;495012;495013	495009			8	
YVPTPFVPYAVQK	1	Unmodified	1507.8075	0.80750177	3114	Q6PCE3	PGM2L1	Glucose 1,6-bisphosphate synthase	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	78.253	77.336	2	0.0045719	66794	160511_QHF_FH_JSI12i_2	54.608	47.918			0.86572	0.90493	17.447	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.7932	0.7999	NaN	1	0	Median	0.94486	1.0238	NaN	1	0	Median	38330000	23628000	14702000	0	0	0	0	0	0	23831000	15734000	8097000	14500000	7894300	6605200	60100	3114	56623	366568;366569	495014	495014			1	
YVPVGLLER	0	Unmodified	1044.5968	0.59678072	4083	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	yes	yes	0	0	0	0	By MS/MS	By matching	By MS/MS	By matching	2.5	0.5		3	3							2	1	2	1	62.03	61.345	2	0.0029208	54487	160511_QHF_FH_JSI11i_3	62.582	52.671			1.0629	1.025	22.601	6	0	Median	1.5899	1.2931	20.618	2	0	Median	0.67288	0.81827	NaN	1	0	Median	0.93869	0.9015	14.316	2	0	Median	1.0536	1.0531	NaN	1	0	Median	368280000	167830000	200450000	75300000	31200000	44101000	36265000	16206000	20059000	132040000	64170000	67874000	124670000	56257000	68418000	60101	4083	56624	366570;366571;366572;366573;366574;366575	495015;495016;495017	495015			3	
YVQDFHPR	0	Unmodified	1060.509	0.50902834	382	O43819	SCO2	Protein SCO2 homolog, mitochondrial	yes	yes	0	0	0	0			By MS/MS		3	0			2									2		16.647	16.647	2;3	0.019398	13758	160511_QHF_FH_JSI11i_3	40.021	33.851			1.5753	1.501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.5753	1.501	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	146930000	69696000	77229000	0	0	0	0	0	0	146930000	69696000	77229000	0	0	0	60102	382	56625	366576;366577	495018;495019	495018			2	
YVQDNIQLHGQQVAR	0	Unmodified	1767.9016	0.90162994	5239	Q9UBK8	MTRR	Methionine synthase reductase	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	4.43	4.75		3	3						1		1	4	2	34.362	32.305	2;3	2.4718E-52	28137	160511_QHF_FH_JSI11i_3	192.39	175.18			1.0987	1.1147	11.196	6	0	Median	NaN	NaN	NaN	0	0	Median	0.91721	1.1181	NaN	1	0	Median	1.21	1.1543	4.5481	3	0	Plateau	0.92202	0.97683	18.244	2	0	Median	721070000	387110000	333960000	0	0	0	138330000	85639000	52695000	355480000	200280000	155190000	227260000	101190000	126070000	60103	5239	56626	366578;366579;366580;366581;366582;366583;366584	495020;495021;495022;495023;495024;495025;495026;495027;495028	495021			9	
YVQELAAVR	0	Unmodified	1047.5713	0.57129425	2587	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	35.862	34.518	2	0.016171	29285	160511_QHF_FH_JSI12i_2	53.775	35.739			8.2315	8.9998	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	8.2315	8.9998	NaN	1	1	Median	61734000	17266000	44468000	0	0	0	0	0	0	0	0	0	61734000	17266000	44468000	60104	2587	56627	366585	495029	495029			1	
YVQLPADEVDTQLLQDAAR	0	Unmodified	2144.075	0.074962442	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									3	2	2	3	86.213	85.717	2;3	6.4929E-25	77803	160511_QHF_FH_JSI10i_1	224.16	223.99			0.95513	0.9011	9.0371	9	2	Median	1.0809	0.8835	9.62	3	2	Median	0.7301	0.85651	1.1624	2	0	Median	0.92306	0.90381	0.42471	2	0	Median	0.98631	1.042	4.5859	2	0	Median	1144500000	581510000	563030000	327990000	136990000	191000000	197310000	117710000	79604000	312350000	178310000	134040000	306890000	148500000	158390000	60105	5558	56628	366586;366587;366588;366589;366590;366591;366592;366593;366594;366595	495030;495031;495032;495033;495034;495035;495036;495037;495038;495039;495040;495041;495042;495043;495044;495045	495039			16	
YVQLPADEVDTQLLQDAARK	1	Unmodified	2272.1699	0.16992546	5558	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	1.2	0.4	4	1									1	1	3	79.374	78.828	3	5.1151E-09	68032	160511_QHF_FH_JSI12i_2	109.65	100.37			0.45082	0.47559	12.874	5	3	Median	NaN	NaN	NaN	0	0	Median	0.34386	0.4104	NaN	1	0	Median	0.58452	0.57164	NaN	1	1	Median	0.39747	0.42753	6.3984	3	2	Plateau	564170000	357310000	206860000	0	0	0	124630000	93142000	31491000	85421000	46388000	39032000	354120000	217780000	136340000	60106	5558	56629	366596;366597;366598;366599;366600	495046;495047;495048;495049;495050	495047			5	
YVQPMASFAR	0	Unmodified	1168.5699	0.56991404	3212	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			2									1	1	43.51	43.394	2	0.00047077	38153	160511_QHF_FH_JSI11i_3	73.573	67.268			1.233	1.208	21.082	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.1576	1.0407	NaN	1	0	Median	1.3134	1.4022	NaN	1	0	Median	96533000	50075000	46458000	0	0	0	0	0	0	48408000	25307000	23101000	48125000	24768000	23357000	60107	3212	56630	366601;366602	495051;495052;495053;495054	495051			4	
YVQSGMMMSQYK	1	Unmodified	1451.6247	0.62472808	3063	Q6KC79	NIPBL	Nipped-B-like protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	42.896	41.968	2	0.00013285	36984	160511_QHF_FH_JSI10i_2	83	62.13			0.51715	0.52117	7.7563	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.51877	0.49336	NaN	1	1	Median	0.51554	0.55055	NaN	1	1	Median	32819000	24067000	8751800	0	0	0	0	0	0	15436000	11426000	4010300	17383000	12642000	4741500	60108	3063	56631	366603;366604;366605;366606	495055;495056;495057;495058	495058			4	
YVSAQPLAGR	0	Unmodified	1060.5665	0.56654322	4398	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	25.369	24.563	2	0.00054364	20467	160511_QHF_FH_JSI11i_2	87.181	71.549			0.59657	0.61976	9.6427	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.66166	0.6635	NaN	1	1	Median	0.53788	0.57891	NaN	1	1	Median	108280000	60062000	48220000	0	0	0	0	0	0	68221000	35779000	32441000	40061000	24283000	15778000	60109	4398	56632	366607;366608	495059;495060	495060			2	
YVSDFTSTLQSIR	0	Unmodified	1515.7569	0.75692277	2119	P83436	COG7	Conserved oligomeric Golgi complex subunit 7	yes	yes	0	0	0	0	By MS/MS				2	0		1								1				71.238	70.384	2	0.0080916	62076	160511_QHF_FH_JSI9i_2	48.741	25.862			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60110	2119	56633	366609	495061	495061			1	
YVSDRPQAFK	1	Unmodified	1209.6142	0.6142217	5719	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	yes	yes	0	0	0	1	By MS/MS				3	0			1							1				20.296	19.058	3	0.025903	15289	160511_QHF_FH_JSI9i_3	26.786	16.029			0.95294	0.77955	NaN	1	0	Median	0.95294	0.77955	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	61908000	29373000	32535000	61908000	29373000	32535000	0	0	0	0	0	0	0	0	0	60111	5719	56634	366610	495062	495062			1	
YVSGSSAERR	0	Unmodified	1110.5418	0.54178503	3070	Q6NTF9	RHBDD2	Rhomboid domain-containing protein 2	yes	yes	0	0	0	1	By MS/MS	By matching			3	0			2							1	1			5.0777	4.5895	3	0.0054417	2623	160511_QHF_FH_JSI9i_3	41.399	28.823			1.0793	1.0371	40.853	2	0	Median	1.7146	1.3845	NaN	1	0	Median	0.67938	0.77692	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	92832000	45401000	47431000	57459000	23044000	34415000	35373000	22356000	13016000	0	0	0	0	0	0	60112	3070	56635	366611;366612	495063	495063			1	
YVSGYGLQK	1	Unmodified	1013.5182	0.51819605	3943	Q969N2	PIGT	GPI transamidase component PIG-T	yes	yes	0	0	0	0				By MS/MS	2	0		1											1	27.303	26.014	2	0.028217	21726	160511_QHF_FH_JSI12i_2	48.561	29.779			1.6937	1.9421	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.6937	1.9421	NaN	1	1	Median	35639000	14861000	20778000	0	0	0	0	0	0	0	0	0	35639000	14861000	20778000	60113	3943	56636	366613	495064	495064			1	
YVSHGATGK	1	Unmodified	918.45593	0.45593014	779	P00966	ASS1	Argininosuccinate synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.5	6.02	1	10	17					4	8	8	8	14	10	4.1125	1.703	2;3	1.6828E-06	2025	160511_QHF_FH_JSI12i_2	102.06	86.911			1.0455	1.1229	125.5	39	16	Median	1.5086	1.2421	21.839	8	0	Median	1.0625	1.1726	18.489	8	1	Median	0.86542	0.81258	198.18	14	11	Median	0.66316	0.73445	94.738	9	4	Median	103090000000	49499000000	53589000000	20491000000	7987500000	12504000000	32672000000	14523000000	18149000000	24888000000	13714000000	11174000000	25038000000	13275000000	11762000000	60114	779	56637	366614;366615;366616;366617;366618;366619;366620;366621;366622;366623;366624;366625;366626;366627;366628;366629;366630;366631;366632;366633;366634;366635;366636;366637;366638;366639;366640;366641;366642;366643;366644;366645;366646;366647;366648;366649;366650;366651;366652;366653	495065;495066;495067;495068;495069;495070;495071;495072;495073;495074;495075;495076;495077;495078;495079;495080;495081;495082;495083;495084;495085;495086;495087;495088;495089;495090;495091;495092;495093;495094;495095;495096;495097;495098;495099;495100;495101;495102;495103;495104;495105;495106;495107;495108;495109;495110;495111;495112;495113;495114;495115;495116;495117;495118;495119;495120;495121;495122;495123;495124	495076			60	
YVSLHVR	0	Unmodified	872.48684	0.48683634	1514	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	8.78	6.46			5						4	4	3	1	1	24.852	19.476	2;3	0.0016464	11494	160513_QHF_FH_JSI10Kac_6	85.265	77.575			0.93671	0.79916	25.399	7	0	Median	1.0029	0.79916	12.4	3	0	Median	0.63124	0.7353	43.246	2	0	Median	0.7311	0.72207	NaN	1	0	Median	1.1213	1.174	NaN	1	0	Median	449480000	230750000	218730000	245040000	108620000	136420000	170720000	104780000	65932000	13163000	7292400	5870400	20565000	10054000	10511000	60115	1514	56638	366654;366655;366656;366657;366658;366659;366660;366661;366662	495125;495126;495127;495128;495129;495130	495130			6	
YVSQYYPK	1	Unmodified	1046.5073	0.50729701	2927	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		27.003	26.234	2	0.0017782	21866	160511_QHF_FH_JSI11i_2	97.798	86.729			1.3776	1.3987	79.118	3	2	Median	5.2443	4.4198	NaN	1	0	Median	0.7728	0.97048	NaN	1	1	Median	1.3776	1.3987	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	335400000	160270000	175130000	50344000	12860000	37484000	105120000	61794000	43327000	179930000	85616000	94317000	0	0	0	60116	2927	56639	366663;366664;366665	495131;495132;495133	495132			3	
YVSSLTEEISK	1	Unmodified	1254.6343	0.63434802	1648	P49257	LMAN1	Protein ERGIC-53	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.22	3.88	6	6	4				2			3	3	7	5	47.146	45.222	2	4.5146E-18	38834	160511_QHF_FH_JSI11i_2	161.17	148.14			1.0082	1.0324	81.23	17	12	Median	1.0914	0.90093	78.115	3	1	Median	0.99701	1.172	45.926	3	1	Median	1.0082	0.99352	73.119	7	6	Median	0.90444	0.92912	128.82	4	4	Median	4267900000	2186400000	2081500000	606570000	304080000	302490000	756090000	390450000	365640000	1756200000	793550000	962630000	1149000000	698330000	450700000	60117	1648	56640	366666;366667;366668;366669;366670;366671;366672;366673;366674;366675;366676;366677;366678;366679;366680;366681;366682;366683	495134;495135;495136;495137;495138;495139;495140;495141;495142;495143;495144;495145;495146;495147;495148;495149;495150;495151;495152;495153;495154;495155	495151			22	
YVTFNSK	1	Unmodified	857.42832	0.42831841	4675	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		3										2	1	18.879	18.322	2	0.012945	14880	160511_QHF_FH_JSI11i_2	72.138	62.389			0.22197	0.24314	179.11	3	3	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.81768	0.8204	233.03	2	2	Median	0.22197	0.24314	NaN	1	1	Median	595580000	357220000	238360000	0	0	0	0	0	0	403970000	213530000	190440000	191610000	143690000	47925000	60118	4675	56641	366684;366685;366686	495156;495157;495158	495158			3	
YVTSAYQWMVPFLHR	0	Unmodified	1896.9345	0.93450998	12	A2RRP1	NBAS	Neuroblastoma-amplified sequence	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	88.405	80.121	3	3.0588E-17	46027	160513_QHF_FH_JSI10Kac_6	142.85	132.66			1.1014	1.2277	21.818	4	2	Median	1.9714	1.6852	NaN	1	0	Median	1.1422	1.3524	NaN	1	0	Median	1.0569	1.0352	NaN	1	1	Median	1.062	1.1145	NaN	1	1	Median	355690000	162660000	193030000	100460000	33528000	66932000	165830000	80051000	85779000	41619000	21256000	20363000	47786000	27826000	19960000	60119	12	56642	366687;366688;366689;366690	495159;495160;495161;495162;495163	495163			5	
YVTTLLYKPI	1	Unmodified	1209.7009	0.70091144	5611;368	Q9Y478;O43741	PRKAB1;PRKAB2	5'-AMP-activated protein kinase subunit beta-1;5'-AMP-activated protein kinase subunit beta-2	no	no	0	0	0	1	By MS/MS		By MS/MS		12.2	5.93		1						1	2	2		2		77.01	69.752	2	3.9485E-08	37621	160513_QHF_FH_JSI11Kac_6	146.81	132.14			0.89315	0.84765	29.188	4	2	Median	0.9169	0.75753	38.275	2	1	Median	NaN	NaN	NaN	0	0	Median	0.89315	0.888	28.954	2	1	Median	NaN	NaN	NaN	0	0	Median	122600000	76000000	46599000	19736000	12589000	7147200	0	0	0	102860000	63411000	39452000	0	0	0	60120	5611;368	56643	366691;366692;366693;366694	495164;495165;495166;495167	495165			4	
YVTVYNLIK	1	Unmodified	1111.6277	0.6277465	1501	P40818	USP8	Ubiquitin carboxyl-terminal hydrolase 8	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			73.228	65.856	2	0.0032425	36223	160513_QHF_FH_JSI10Kac_6	74.486	65.623			0.61387	0.72414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.61387	0.72414	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	35024000	18575000	16449000	0	0	0	35024000	18575000	16449000	0	0	0	0	0	0	60121	1501	56644	366695	495168	495168			1	
YVVACKEPK	2	Acetyl (K)	1134.5743	0.57433072	4057	Q96ES7	CCDC101	SAGA-associated factor 29 homolog	yes	yes	1	0	0	1				By MS/MS	14	0							1						1	36.333	26.896	2	0.051378	16215	160513_QHF_FH_JSI12Kac_4	43.442	27.561			1.9194	2.0518	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.9194	2.0518	NaN	1	0	Median	2522700	887470	1635200	0	0	0	0	0	0	0	0	0	2522700	887470	1635200	60122	4057	56645	366696	495169	495169			1	
YVVFFFYPLDFTFVCPTEIIAFSDR	0	Unmodified	3092.5034	0.50340419	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		9	7		2							2	2	1	1		103.89	99.204	2;3	1.517E-37	54442	160513_QHF_FH_JSI9Kac_6	213.34	198.38			1.022	0.84327	11.101	3	1	Plateau	0.96141	0.8148	4.8577	2	1	Median	0.7878	0.97825	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	90687000	49694000	40993000	63174000	38554000	24620000	24105000	11140000	12965000	3407100	0	3407100	0	0	0	60123	2249	56646	366697;366698;366699;366700	495170;495171;495172;495173;495174;495175;495176	495176			7	
YVVFFFYPLDFTFVCPTEIIAFSDRAEEFK	1	Unmodified	3696.7891	0.7890811	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	1		By MS/MS			16	0									2		2			101.56	95.84	3;4	7.1781E-208	56577	160513_QHF_FH_JSI10Kac_6	292.87	282.48			0.96868	1.1506	5.5504	2	0	Median	NaN	NaN	NaN	0	0	Median	0.96868	1.1506	5.5504	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1393300000	666550000	726790000	0	0	0	1393300000	666550000	726790000	0	0	0	0	0	0	60124	2249	56647	366701;366702	495177;495178;495179;495180	495177			4	
YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKK	2	Unmodified	3824.884	0.88404412	2249	Q06830	PRDX1	Peroxiredoxin-1	yes	yes	0	0	0	2		By MS/MS			16	0									3		3			99.922	94.202	3;4;5	1.1463E-160	55415	160513_QHF_FH_JSI10Kac_6	260.93	251.64			0.95214	1.1316	4.694	3	0	Median	NaN	NaN	NaN	0	0	Median	0.95214	1.1316	4.694	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	2487400000	1172500000	1314800000	0	0	0	2487400000	1172500000	1314800000	0	0	0	0	0	0	60125	2249	56648	366703;366704;366705	495181;495182;495183;495184	495183			4	
YVVGLIIK	1	Unmodified	903.57934	0.57933974	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.6	6.11		4						5	5	4	4	3	3	71.479	64.696	2	0.00044377	33608	160513_QHF_FH_JSI12Kac_6	113.25	73.71			0.96792	0.86706	40.997	13	6	Median	1.0017	0.86706	18.399	3	3	Median	1.0004	1.1934	70.54	4	3	Median	0.8647	0.82302	8.8373	3	0	Median	0.96792	1.0208	26.499	3	0	Median	1932700000	937480000	995210000	323330000	154510000	168820000	638870000	255960000	382910000	570300000	312550000	257750000	400200000	214470000	185730000	60126	231	56649	366706;366707;366708;366709;366710;366711;366712;366713;366714;366715;366716;366717;366718;366719	495185;495186;495187;495188;495189;495190;495191;495192;495193;495194;495195;495196;495197;495198;495199;495200;495201;495202;495203	495201			19	
YVVGQSFAK	1	Unmodified	997.52328	0.52328142	598	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3	0			4							1	1	1	1	36.735	35.966	2	5.0724E-06	30602	160511_QHF_FH_JSI12i_3	117.04	109.81			0.88589	0.97386	27.078	4	0	Median	1.3799	1.1418	NaN	1	0	Median	0.95689	1.12	NaN	1	0	Median	0.70035	0.64337	NaN	1	0	Median	0.82015	0.84675	NaN	1	0	Median	1498900000	787100000	711810000	315840000	152530000	163310000	252710000	144520000	108190000	342930000	196770000	146160000	587430000	293290000	294150000	60127	598	56650	366720;366721;366722;366723	495204;495205;495206;495207;495208;495209;495210;495211;495212;495213	495213			10	
YVVLCESPQDK	1	Unmodified	1336.6333	0.63330216	3699	Q8TC07	TBC1D15	TBC1 domain family member 15	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	36.899	36.306	2	0.02503	32900	160511_QHF_FH_JSI12i_1	42.348	28.142			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60128	3699	56651	366724	495214	495214			1	
YVVLFFYPLDFTFVCPTEIIAFSNR	0	Unmodified	3057.535	0.53503867	1390	P32119	PRDX2	Peroxiredoxin-2	yes	yes	0	0	0	0		By MS/MS			7	6.38		1	1						1		3			103.68	101.72	2;3	1.4239E-196	57318	160513_QHF_FH_JSI10Kac_6	298.71	266.37			1.104	1.3415	9.7357	2	0	Median	NaN	NaN	NaN	0	0	Median	1.104	1.3415	9.7357	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	534960000	225250000	309700000	0	0	0	534960000	225250000	309700000	0	0	0	0	0	0	60129	1390	56652	366725;366726;366727	495215;495216;495217;495218;495219;495220;495221	495221			7	
YVVLSYLGLLSQEK	1	Unmodified	1610.892	0.89195969	4519	Q9BXK5	BCL2L13	Bcl-2-like protein 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	91.347	83.021	2;3	3.106E-33	46259	160513_QHF_FH_JSI11Kac_6	210.35	177.75			0.96723	1.0605	35.687	8	1	Median	0.96723	0.83137	3.3711	2	0	Median	0.88717	1.0605	7.3328	2	0	Median	1.5306	1.4602	73.564	2	1	Median	1.127	1.2179	7.4201	2	0	Median	650360000	296460000	353900000	178850000	91147000	87699000	163910000	85989000	77926000	190830000	65270000	125560000	116760000	54051000	62710000	60130	4519	56653	366728;366729;366730;366731;366732;366733;366734;366735	495222;495223;495224;495225;495226;495227;495228;495229;495230;495231;495232	495222			9	
YVVNHLGR	0	Unmodified	956.5192	0.5191991	2767	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By matching	By matching	3	0			8							2	2	2	2	17.377	16.83	2;3	0.0012218	13451	160511_QHF_FH_JSI9i_3	66.429	56.015			0.85826	0.89872	26.398	8	0	Median	1.4241	1.1436	0.5575	2	0	Median	0.85826	0.98056	3.1917	2	0	Median	0.73857	0.6901	28.221	2	0	Median	0.67085	0.68128	7.3691	2	0	Median	1039800000	523410000	516360000	352890000	141370000	211520000	215980000	105500000	110480000	205970000	124440000	81534000	264930000	152100000	112830000	60131	2767	56654	366736;366737;366738;366739;366740;366741;366742;366743	495233;495234;495235	495234			3	
YVVSMGSCANGGGYYHYSYSVVR	0	Oxidation (M)	2591.1209	0.12094313	495	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	62.214	52.953	3	4.0864E-17	29139	160513_QHF_FH_JSI10Kac_6	119.38	116.62			1.2482	1.1408	17.54	4	0	Median	1.3436	1.1515	NaN	1	0	Median	0.953	1.1303	NaN	1	0	Median	1.1595	1.096	NaN	1	0	Median	1.4793	1.5949	NaN	1	0	Median	77205000	33431000	43774000	22468000	9589700	12878000	23053000	12778000	10275000	10393000	4442600	5950700	21292000	6620900	14671000	60132	495	56655	366744;366745;366746;366747	495236;495237;495238;495239;495240;495241;495242	495242		185	7	
YVVSMGSCANGGGYYHYSYSVVR	0	Unmodified	2575.126	0.12602851	495	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	71.118	62.301	3	4.4372E-126	34319	160513_QHF_FH_JSI10Kac_6	246.34	242.27			1.2529	1.2044	15.947	4	0	Median	1.4206	1.2219	NaN	1	0	Median	0.9874	1.1872	NaN	1	0	Median	1.105	1.0781	NaN	1	0	Median	1.4909	1.5676	NaN	1	0	Median	357220000	166770000	190450000	49715000	17321000	32393000	144130000	75679000	68448000	93836000	44573000	49263000	69545000	29197000	40348000	60133	495	56655	366748;366749;366750;366751	495243;495244;495245;495246;495247;495248;495249;495250	495250			8	
YVVTSVSWWSHK	1	Unmodified	1477.7354	0.73539946	1867	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.83	6.28			22						13	12	12	5	6	66.727	62.979	2;3	1.2073E-61	34061	160513_QHF_FH_JSI11Kac_6	254.5	195.08			1.0224	0.96599	71.377	30	13	Median	1.1562	0.99022	38.953	9	5	Median	0.78159	0.90739	57.816	10	5	Median	1.0027	0.96264	142.12	5	1	Median	0.79904	0.83853	49.311	6	2	Median	25481000000	13190000000	12290000000	4562900000	1998600000	2564300000	12725000000	7147100000	5578100000	4782400000	2396400000	2386000000	3410200000	1648200000	1762000000	60134	1867	56656	366752;366753;366754;366755;366756;366757;366758;366759;366760;366761;366762;366763;366764;366765;366766;366767;366768;366769;366770;366771;366772;366773;366774;366775;366776;366777;366778;366779;366780;366781;366782;366783;366784;366785;366786	495251;495252;495253;495254;495255;495256;495257;495258;495259;495260;495261;495262;495263;495264;495265;495266;495267;495268;495269;495270;495271;495272;495273;495274;495275;495276;495277;495278;495279;495280;495281;495282;495283;495284;495285;495286;495287;495288;495289;495290;495291;495292;495293;495294;495295;495296;495297;495298;495299;495300;495301;495302;495303;495304;495305;495306;495307;495308	495269			57	
YVVVTGITPTPLGEGK	1	Unmodified	1629.8978	0.89777334	1004	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.56	6.21	8	4	5				4	6		6	7	8	6	74.093	69.445	2;3	3.8533E-30	64032	160511_QHF_FH_JSI10i_1	191.26	172.51			0.94795	0.9643	17.472	25	2	Median	1.1345	0.92508	9.6375	6	0	Median	0.80002	0.96664	26.773	7	1	Median	0.87005	0.87416	13.964	7	0	Median	0.98763	1.0519	6.8901	5	1	Median	2869900000	1439800000	1430200000	563340000	240810000	322530000	701760000	355970000	345790000	854890000	465190000	389700000	749960000	377790000	372170000	60135	1004	56657	366787;366788;366789;366790;366791;366792;366793;366794;366795;366796;366797;366798;366799;366800;366801;366802;366803;366804;366805;366806;366807;366808;366809;366810;366811;366812;366813	495309;495310;495311;495312;495313;495314;495315;495316;495317;495318;495319;495320;495321;495322;495323;495324;495325;495326;495327;495328;495329;495330;495331;495332;495333;495334;495335;495336;495337;495338;495339;495340;495341;495342;495343;495344;495345;495346;495347;495348;495349;495350;495351;495352	495325			44	
YVWLVYEQDR	0	Unmodified	1369.6667	0.6666512	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	0	By MS/MS	By MS/MS			8.5	7.5	1								1	1	1			65.337	61.569	2	0.022907	37340	160513_QHF_FH_JSI10Kac_6	57.931	40.111			0.75356	0.75079	12.776	2	1	Median	1.0103	0.82178	NaN	1	0	Median	0.56208	0.68594	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	327010000	168630000	158390000	299930000	151050000	148890000	27080000	17579000	9501000	0	0	0	0	0	0	60136	1343	56658	366814;366815	495353;495354	495354			2	
YVWLVYEQDRPLK	1	Unmodified	1707.8984	0.89844205	1343	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.13	6.58		8	15						16	7	9	12	11	72.487	68.258	2;3	6.3344E-74	34924	160513_QHF_FH_JSI12Kac_6	255.7	229.03			0.91636	0.98841	89.896	35	28	Median	1.4105	1.1631	86.359	6	4	Median	0.93286	1.1183	110.52	8	5	Median	0.76318	0.72318	97.109	11	10	Median	0.79922	0.87952	78.37	10	9	Median	31926000000	15242000000	16684000000	4501400000	1977200000	2524100000	9426400000	4737800000	4688600000	8711300000	3666300000	5045100000	9287200000	4860700000	4426500000	60137	1343	56659	366816;366817;366818;366819;366820;366821;366822;366823;366824;366825;366826;366827;366828;366829;366830;366831;366832;366833;366834;366835;366836;366837;366838;366839;366840;366841;366842;366843;366844;366845;366846;366847;366848;366849;366850;366851;366852;366853;366854	495355;495356;495357;495358;495359;495360;495361;495362;495363;495364;495365;495366;495367;495368;495369;495370;495371;495372;495373;495374;495375;495376;495377;495378;495379;495380;495381;495382;495383;495384;495385;495386;495387;495388;495389;495390;495391;495392;495393;495394;495395;495396;495397;495398;495399;495400;495401;495402;495403;495404;495405;495406;495407;495408;495409;495410;495411;495412;495413;495414;495415;495416;495417;495418;495419;495420;495421	495415			67	
YVWSHVILK	1	Unmodified	1143.6441	0.64406526	4740	Q9H6B4	CLMP	CXADR-like membrane protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	14.6	4.09			1						8	3	2	2	2	61.389	53.247	2;3	6.6842E-05	28217	160513_QHF_FH_JSI9Kac_6	98.233	87.069			1.01	0.96553	14.644	9	4	Median	1.01	0.87355	6.5222	3	2	Median	0.76462	0.90598	9.9014	2	0	Median	1.1655	1.1604	1.9275	2	1	Median	0.98636	1.0381	10.254	2	1	Median	186330000	88712000	97622000	44465000	17903000	26562000	62694000	33980000	28714000	28105000	11338000	16767000	51070000	25491000	25579000	60138	4740	56660	366855;366856;366857;366858;366859;366860;366861;366862;366863	495422;495423;495424;495425;495426;495427;495428;495429;495430;495431	495423			10	
YVYDALRPQDTEANATTYFTR	0	Unmodified	2494.1765	0.1764674	162	O00750	PIK3C2B	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta	yes	yes	0	0	0	1		By MS/MS			2	0		1									1			69.715	68.913	3	0.0083271	61210	160511_QHF_FH_JSI10i_2	37.552	29.051			1.0362	1.2596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.0362	1.2596	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	36876000	17395000	19481000	0	0	0	36876000	17395000	19481000	0	0	0	0	0	0	60139	162	56661	366864	495432;495433	495433			2	
YVYDSAFHPDTGEK	1	Unmodified	1627.7155	0.71545188	4503	Q9BWM7	SFXN3	Sideroflexin-3	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	2	0		4									1	1	2	39.851	38.814	2;3	3.0274E-05	33274	160511_QHF_FH_JSI11i_2	100.4	95.768			1.1003	1.126	7.3142	3	0	Plateau	NaN	NaN	NaN	0	0	Median	0.81325	0.98044	NaN	1	0	Median	1.1003	1.126	NaN	1	0	Median	0.97802	1.0947	NaN	1	0	Median	278030000	131460000	146580000	0	0	0	65091000	35499000	29592000	138290000	60983000	77307000	74652000	34975000	39677000	60140	4503	56662	366865;366866;366867;366868	495434;495435;495436;495437;495438;495439;495440;495441	495439			8	
YVYFTIVTTDHK	1	Unmodified	1485.7504	0.75038083	2853	Q53GA4	PHLDA2	Pleckstrin homology-like domain family A member 2	yes	yes	0	0	0	0	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	69.694	60.796	3	1.864E-06	33009	160513_QHF_FH_JSI11Kac_6	81.625	68.197			0.92812	0.9508	13.457	4	0	Median	0.98128	0.84116	NaN	1	0	Median	0.82832	0.96278	NaN	1	0	Median	1.2668	1.1629	NaN	1	0	Median	0.87785	0.93897	NaN	1	0	Median	254210000	126960000	127260000	50209000	24631000	25578000	81122000	48572000	32550000	58267000	25755000	32511000	64615000	27998000	36617000	60141	2853	56663	366869;366870;366871;366872	495442;495443;495444	495442			2	
YVYIWSTYHDLSK	1	Unmodified	1673.809	0.80895834	2902	Q5JSH3	WDR44	WD repeat-containing protein 44	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.1	6.85		5	1						8	3	3	4	4	72.602	67.293	2;3	5.771E-77	36293	160513_QHF_FH_JSI10Kac_6	242.88	229.07			0.99489	0.93607	22.335	14	2	Median	1.0887	0.92866	17.879	3	0	Median	0.77624	0.92257	7.2342	3	0	Plateau	1.0188	0.9877	23.995	4	1	Median	0.73483	0.77458	29.885	4	1	Linear	6867800000	3697100000	3170700000	1790300000	752460000	1037800000	2461700000	1525700000	936010000	1296800000	710880000	585890000	1319000000	708080000	610910000	60142	2902	56664	366873;366874;366875;366876;366877;366878;366879;366880;366881;366882;366883;366884;366885;366886	495445;495446;495447;495448;495449;495450;495451;495452;495453;495454;495455;495456;495457;495458;495459;495460;495461;495462;495463;495464;495465;495466	495466			20	
YVYNYEAESSSGVPGTADSR	0	Unmodified	2150.9393	0.93925682	43	CON__ENSEMBL:ENSBTAP00000032840			yes	yes	0	0	0	0			By MS/MS		1	0	1											1		46.915	46.504	2	1.0747E-07	42071	160511_QHF_FH_JSI11i_1	117.37	105.01		+	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60143	43	56665	366887	495467	495467			1	
YVYQPMEK	1	Oxidation (M)	1072.4899	0.48993238	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	1	0				By MS/MS	2	0		1											1	29.999	28.691	2	0.054	24184	160511_QHF_FH_JSI12i_2	61.999	53.581			0.62009	0.6801	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.62009	0.6801	NaN	1	1	Median	21676000	14751000	6925700	0	0	0	0	0	0	0	0	0	21676000	14751000	6925700	60144	1620	56666	366888	495468	495468			1	
YVYQPMEK	1	Unmodified	1056.495	0.49501776	1620	P48444	ARCN1	Coatomer subunit delta	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	3	3								2	2	1	1	29.586	28.751	2	0.00079816	25534	160511_QHF_FH_JSI10i_1	91.9	70.129			1.1128	1.0018	26.339	5	4	Median	1.4369	1.193	33.027	2	2	Median	0.80523	1.0018	NaN	1	1	Median	0.80988	0.80935	NaN	1	1	Median	1.296	1.3828	NaN	1	0	Median	640410000	250780000	389640000	222350000	83885000	138470000	109450000	46172000	63274000	202740000	80929000	121810000	105880000	39793000	66084000	60145	1620	56666	366889;366890;366891;366892;366893;366894	495469;495470;495471;495472;495473;495474	495470			6	
YVYYYSYLLK	1	Unmodified	1373.6907	0.69074068	1911	P60484	PTEN	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									8	2	2	2	2	80.865	72.608	2	9.3483E-11	40638	160513_QHF_FH_JSI10Kac_6	143.01	120.27			1.1941	1.1247	26.115	8	8	Median	1.292	1.1281	17.091	2	2	Median	1.1478	1.354	32.451	2	2	Median	1.038	0.97788	25.982	2	2	Median	0.98953	1.0493	39.742	2	2	Median	2164900000	1005700000	1159200000	672740000	276340000	396400000	709880000	312080000	397810000	428910000	216150000	212760000	353340000	201090000	152250000	60146	1911	56667	366895;366896;366897;366898;366899;366900;366901;366902	495475;495476;495477;495478;495479;495480;495481;495482	495481			8	
YWAEISDTIISGTFHQWR	0	Unmodified	2209.0593	0.059252798	4307	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	16	0									4	1		1	2	88.512	79.297	3	1.2309E-33	42561	160513_QHF_FH_JSI12Kac_6	169.61	157.82			0.6009	0.62653	47.1	4	1	Linear	1.6235	1.364	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.2134	1.1762	NaN	1	0	Median	0.9658	1.0242	78.067	2	0	Median	478830000	222120000	256720000	169840000	81507000	88334000	0	0	0	101120000	37871000	63254000	207870000	102740000	105130000	60147	4307	56668	366903;366904;366905;366906	495483;495484;495485;495486	495486			4	
YWDLMNLSEK	1	Unmodified	1297.6013	0.60127375	4559	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	78.852	78.033	2	0.00097915	68445	160511_QHF_FH_JSI11i_2	68.626	57.136			0.90803	1.0359	10.942	4	1	Median	1.1817	1.0007	NaN	1	0	Median	0.87381	1.0834	NaN	1	1	Median	0.85366	0.85476	NaN	1	0	Median	0.9436	1.0724	NaN	1	0	Median	291610000	135890000	155720000	54542000	24334000	30209000	69600000	35357000	34243000	99559000	47319000	52240000	67910000	28882000	39028000	60148	4559	56669	366907;366908;366909;366910	495487;495488;495489;495490;495491;495492;495493	495491			6	
YWDVPPPGFEHITPMQYK	1	Unmodified	2204.0401	0.040097261	1274	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.04	0.204		22	1							3	7	7	6	85.277	84.597	3	2.1981E-06	74754	160511_QHF_FH_JSI10i_2	101.05	92.665			1.4492	1.6121	53.943	20	12	Median	2.0649	1.8251	37.56	3	0	Median	1.7846	2.2089	73.093	5	3	Median	1.0985	1.1015	58.093	6	5	Median	1.4291	1.6121	42.328	6	4	Median	1480600000	610070000	870550000	165470000	58564000	106910000	496920000	198110000	298810000	478880000	198750000	280130000	339350000	154640000	184710000	60149	1274	56670	366911;366912;366913;366914;366915;366916;366917;366918;366919;366920;366921;366922;366923;366924;366925;366926;366927;366928;366929;366930;366931;366932;366933	495494;495495;495496;495497;495498;495499;495500;495501;495502;495503;495504;495505;495506;495507;495508;495509;495510;495511;495512;495513;495514;495515;495516;495517;495518;495519;495520;495521;495522;495523;495524;495525;495526;495527;495528;495529	495524			36	
YWEAFLPEAK	1	Unmodified	1252.6128	0.61282471	444;2448	O60749;Q13596	SNX2;SNX1	Sorting nexin-2;Sorting nexin-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	74.651	73.789	2	3.6689E-11	64596	160511_QHF_FH_JSI11i_2	149.72	132.33			0.82385	0.99921	28.632	4	1	Linear	1.1262	0.98905	NaN	1	0	Median	1.4113	1.6998	NaN	1	1	Median	0.89809	0.90424	NaN	1	0	Median	0.921	1.0095	NaN	1	0	Median	837300000	454810000	382490000	131610000	59370000	72236000	156300000	81633000	74667000	365990000	228710000	137290000	183400000	85096000	98305000	60150	444;2448	56671	366934;366935;366936;366937	495530;495531;495532;495533;495534;495535;495536	495534			7	
YWFAATVAVPLVGK	1	Unmodified	1520.8391	0.83913625	4447	Q9BUN8	DERL1	Derlin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	1	2	2	90.851	82.171	2;3	2.1717E-30	44060	160513_QHF_FH_JSI12Kac_6	201.75	189.13			1.0035	1.054	30.696	7	0	Median	1.5926	1.3671	27.795	2	0	Median	0.89162	1.054	NaN	1	0	Median	1.0758	1.0376	7.5517	2	0	Median	0.6448	0.69471	12.672	2	0	Median	1324200000	682780000	641450000	288410000	127640000	160770000	383410000	231000000	152410000	475580000	218280000	257310000	176830000	105860000	70964000	60151	4447	56672	366938;366939;366940;366941;366942;366943;366944	495537;495538;495539;495540;495541;495542;495543;495544;495545;495546;495547;495548;495549	495544			13	
YWGEIISQQYNFDRDNTEVAYLK	1	Unmodified	2851.3453	0.34532364	1060	P14735	IDE	Insulin-degrading enzyme	yes	yes	0	0	0	1			By MS/MS	By MS/MS	3	0			4									2	2	88.363	88.308	3	5.6386E-09	78904	160511_QHF_FH_JSI11i_3	85.231	82.168			0.83917	0.78156	27.072	4	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.83917	0.78156	10.481	2	0	Median	0.7857	0.79697	45.662	2	1	Median	194210000	105620000	88589000	0	0	0	0	0	0	96091000	49456000	46635000	98115000	56161000	41954000	60152	1060	56673	366945;366946;366947;366948	495550;495551;495552;495553;495554;495555;495556;495557;495558	495552			9	
YWGSGLHDK	1	Unmodified	1061.493	0.49304393	4334	Q99986	VRK1	Serine/threonine-protein kinase VRK1	yes	yes	0	0	0	0				By MS/MS	3	0			2										2	18.834	18.86	2;3	0.0083513	15292	160511_QHF_FH_JSI12i_3	39.001	35.158			0.59132	0.59264	10.626	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.59132	0.59264	10.626	2	1	Median	131720000	68458000	63260000	0	0	0	0	0	0	0	0	0	131720000	68458000	63260000	60153	4334	56674	366949;366950	495559;495560	495559			2	
YWHKEISK	2	Acetyl (K)	1131.5713	0.57129425	4989	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	yes	yes	1	0	0	1		By matching	By MS/MS	By MS/MS	16	0									4		1	1	2	35.601	26.568	3	0.0029969	14862	160513_QHF_FH_JSI11Kac_6	64.711	48.83			0.57613	0.61927	68.88	4	2	Median	NaN	NaN	NaN	0	0	Median	0.6013	0.71356	NaN	1	0	Median	0.55201	0.53743	NaN	1	0	Median	0.98245	1.0911	103.07	2	2	Median	29205000	15982000	13223000	0	0	0	10977000	5778600	5198100	11852000	7316200	4535800	6375800	2886800	3489000	60154	4989	56675	366951;366952;366953;366954	495561;495562;495563;495564	495562	3293		4	
YWKPTGTPK	2	Unmodified	1076.5655	0.56548059	4301	Q99685	MGLL	Monoglyceride lipase	yes	yes	0	0	0	1	By MS/MS	By MS/MS		By MS/MS	3	0			4							2	1		1	17.308	16.483	3	0.0062054	13316	160511_QHF_FH_JSI9i_3	38.303	36.259			0.83727	0.91325	106.5	4	1	Median	0.9822	0.78502	177.62	2	0	Median	0.561	0.65291	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.2496	1.2774	NaN	1	1	Median	643090000	311830000	331260000	224960000	93979000	130980000	120960000	68158000	52807000	0	0	0	297160000	149690000	147470000	60155	4301	56676	366955;366956;366957;366958	495565;495566;495567;495568	495567			4	
YWLAQQAAK	1	Unmodified	1077.5607	0.56072956	4544	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		46.942	37.267	2	0.03507	20339	160513_QHF_FH_JSI11Kac_6	53.554	34.824			1.3919	1.3714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3919	1.3714	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	3867600	1620700	2246900	0	0	0	0	0	0	3867600	1620700	2246900	0	0	0	60156	4544	56677	366959	495569	495569			1	
YWLCAATGPSIK	1	Unmodified	1365.6751	0.67510739	2061	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.25	6.6		2	4					1	5	1	4	4	3	66.852	61.269	2;3	1.4199E-06	33598	160513_QHF_FH_JSI10Kac_6	116.52	101.37			0.94808	0.96315	35.838	10	6	Median	1.1033	0.94784	NaN	1	0	Median	1.0568	1.2319	22.096	4	3	Median	0.8043	0.77365	19.579	2	1	Median	1.464	0.9787	53.106	3	2	Plateau	1561500000	727240000	834300000	39581000	16438000	23144000	290320000	149010000	141300000	583340000	273590000	309750000	648300000	288200000	360110000	60157	2061	56678	366960;366961;366962;366963;366964;366965;366966;366967;366968;366969;366970;366971	495570;495571;495572;495573;495574;495575;495576;495577;495578;495579;495580;495581	495581			12	
YWLMLNEK	1	Unmodified	1095.5423	0.54230231	4773	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	yes	yes	0	0	0	0		By MS/MS		By MS/MS	2	0		2									1		1	69.763	68.71	2	0.0051852	59222	160511_QHF_FH_JSI12i_2	64.207	48.063			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60158	4773	56679	366972;366973	495582;495583	495582			2	
YWLYYLHPVLQR	0	Unmodified	1649.8718	0.87183337	1072	P15291	B4GALT1	Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	15	3.46			1						12	3	3	3	4	83.096	75.474	2;3	4.9769E-76	39437	160513_QHF_FH_JSI12Kac_6	290.77	265.92			0.84149	0.81931	56.449	13	9	Median	0.94953	0.80488	35.54	3	2	Median	0.84149	1.0002	66.66	3	2	Median	0.64914	0.60993	46.703	3	2	Median	0.85794	0.898	83.918	4	3	Median	37676000000	20277000000	17399000000	8034800000	3965700000	4069100000	18930000000	10777000000	8152900000	5637100000	3389700000	2247400000	5074300000	2145000000	2929300000	60159	1072	56680	366974;366975;366976;366977;366978;366979;366980;366981;366982;366983;366984;366985;366986	495584;495585;495586;495587;495588;495589;495590;495591;495592;495593;495594;495595;495596;495597;495598;495599;495600	495593			17	
YWNAYMLFYQR	0	Oxidation (M)	1569.7075	0.70747015	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	82.682	74.438	2	8.9304E-27	40292	160513_QHF_FH_JSI9Kac_6	176.79	160.16			1.0907	1.0148	12.513	4	0	Median	1.1327	0.98051	NaN	1	0	Median	0.73255	0.86396	NaN	1	0	Median	1.088	1.0503	NaN	1	0	Median	1.0935	1.1641	NaN	1	0	Median	215470000	101630000	113850000	68056000	31183000	36873000	71158000	33812000	37345000	30757000	14431000	16326000	45501000	22200000	23301000	60160	5468	56681	366987;366988;366989;366990	495601;495602;495603;495604;495605;495606;495607	495602		2667	7	
YWNAYMLFYQR	0	Unmodified	1553.7126	0.71255553	5468	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	86.423	78.162	2	1.4908E-35	44666	160513_QHF_FH_JSI10Kac_6	194.2	168.81			0.82362	1.2703	36.757	4	0	Linear	0.52732	0.44686	NaN	1	0	Median	0.83492	0.9854	NaN	1	0	Median	0.99692	0.93562	NaN	1	0	Median	0.81247	0.85277	NaN	1	0	Median	1586200000	954250000	631940000	160590000	122420000	38166000	832430000	497340000	335090000	373890000	207310000	166580000	219290000	127180000	92109000	60161	5468	56681	366991;366992;366993;366994	495608;495609;495610;495611;495612;495613;495614;495615	495615			8	
YWPDEYALK	1	Unmodified	1183.555	0.55497548	2239	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	59.976	59.057	2	0.00030513	51178	160511_QHF_FH_JSI11i_2	83.206	68.537			0.92419	0.9888	7.2775	4	0	Median	1.0966	0.95174	NaN	1	0	Median	0.90711	1.1202	NaN	1	0	Median	0.94159	0.97008	NaN	1	0	Median	0.87908	1.0079	NaN	1	0	Median	269000000	136760000	132250000	45450000	19039000	26411000	81601000	44435000	37165000	76292000	40157000	36135000	65660000	33125000	32534000	60162	2239	56682	366995;366996;366997;366998	495616;495617;495618;495619	495618			4	
YWPQEAGEYAVHVLCNSEDIR	0	Unmodified	2535.1489	0.14887244	1192	P21333	FLNA	Filamin-A	yes	yes	0	0	0	0			By MS/MS	By MS/MS	3	0			3									1	2	89.404	89.345	3	2.4966E-13	77435	160511_QHF_FH_JSI12i_3	121.26	114.07			1.4921	1.5111	29.847	3	0	Plateau	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.98732	0.91836	NaN	1	0	Median	1.453	1.4653	18.062	2	0	Median	437860000	188860000	249010000	0	0	0	0	0	0	103320000	52305000	51012000	334550000	136550000	197990000	60163	1192	56683	366999;367000;367001	495620;495621;495622;495623;495624;495625;495626	495624			7	
YWPTADGR	0	Unmodified	964.44028	0.44028008	1784	P52788	SMS	Spermine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	30.732	29.814	2	0.0012624	25186	160511_QHF_FH_JSI12i_2	89.142	56.672			0.82349	0.96788	10.967	4	0	Median	1.1538	0.97489	NaN	1	0	Median	0.80166	1.0051	NaN	1	0	Median	0.79027	0.78963	NaN	1	0	Median	0.84592	0.96092	NaN	1	0	Median	533420000	269220000	264200000	92362000	37271000	55090000	106860000	59480000	47376000	202780000	99671000	103110000	131420000	72801000	58621000	60164	1784	56684	367002;367003;367004;367005	495627;495628;495629;495630;495631	495628			5	
YWQQVIDMNDYQR	0	Unmodified	1757.7832	0.78315429	440	O60701	UGDH	UDP-glucose 6-dehydrogenase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		4								1	2	1		66.421	65.639	2	3.1505E-10	57363	160511_QHF_FH_JSI11i_2	145.89	139.65			1.0878	1.2262	17.385	4	2	Median	1.5918	1.3159	NaN	1	0	Median	1.0646	1.3012	18.379	2	2	Median	0.97989	0.99187	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	167280000	80327000	86950000	34872000	12021000	22852000	70714000	36797000	33917000	61691000	31509000	30182000	0	0	0	60165	440	56685	367006;367007;367008;367009	495632;495633;495634;495635;495636	495634			4	
YWQSNMNNVK	1	Unmodified	1282.5765	0.57645598	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.8	6.53		2	1					1	4	2	3	2	1	33.678	27.713	2	0.0002709	14612	160513_QHF_FH_JSI12Kac_6	91.069	69.768			0.92164	1.0431	37.579	8	4	Median	0.93856	0.81832	59.907	2	2	Median	0.96254	1.1354	25.868	3	1	Median	1.2085	1.135	58.555	2	1	Median	0.88248	0.95839	NaN	1	0	Median	154060000	74198000	79857000	31880000	14366000	17514000	60395000	31230000	29165000	45677000	21003000	24675000	16103000	7599100	8504000	60166	4591	56686	367010;367011;367012;367013;367014;367015;367016;367017	495637;495638;495639;495640;495641;495642;495643	495643			7	
YWQSNMNNVK	1	Oxidation (M)	1298.5714	0.5713706	4591	Q9C0J8	WDR33	pre-mRNA 3' end processing protein WDR33	yes	yes	0	0	1	0	By MS/MS				16	0									1	1				22.063	14.691	2	0.046384	8518	160513_QHF_FH_JSI9Kac_6	50.878	40.355			0.71714	0.63857	NaN	1	1	Median	0.71714	0.63857	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	3136700	1777800	1358900	3136700	1777800	1358900	0	0	0	0	0	0	0	0	0	60167	4591	56686	367018	495644	495644			1	
YWSQFDENIR	0	Unmodified	1356.6099	0.6098646	2988	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	53.508	52.539	2	0.00032309	45512	160511_QHF_FH_JSI11i_2	78.113	68.15			1.0534	1.1082	11.925	4	0	Median	1.5137	1.3264	NaN	1	0	Median	0.81241	0.99497	NaN	1	0	Median	1.1158	1.1034	NaN	1	0	Median	0.9945	1.113	NaN	1	0	Median	145060000	65318000	79744000	28213000	12413000	15800000	33136000	16379000	16757000	54554000	21894000	32661000	29159000	14632000	14527000	60168	2988	56687	367019;367020;367021;367022	495645;495646;495647;495648;495649	495647			5	
YWSQQIEESTTVVTTQSAEVGAAETTLTELRR	0	Unmodified	3583.7642	0.76419957	842	P05783	KRT18	Keratin, type I cytoskeletal 18	yes	yes	0	0	0	1		By MS/MS	By MS/MS		5.75	5.93		2	1						1		3	1		94.669	93.078	3;4	1.5315E-11	45159	160513_QHF_FH_JSI10Kac_6	90.741	81.114			0.66809	0.78144	30.427	4	2	Median	NaN	NaN	NaN	0	0	Median	0.65821	0.7639	16.916	3	2	Median	1.22	1.22	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	250100000	152080000	98023000	0	0	0	204600000	128660000	75938000	45500000	23415000	22085000	0	0	0	60169	842	56688	367023;367024;367025;367026	495650;495651;495652;495653	495653			4	
YWTLTATGGVQSTASSK	1	Unmodified	1756.8632	0.86317875	2751	Q16658	FSCN1	Fascin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.3	6.38	5	8	8						9	6	8	7	9	58.755	55.036	2;3	2.2071E-83	30172	160513_QHF_FH_JSI10Kac_6	227.57	202.13			0.93612	0.93732	37.459	26	8	Median	1.1938	1.0274	13.887	6	2	Median	0.72146	0.85166	63.112	7	3	Median	0.98795	0.95588	9.0978	5	0	Median	0.83892	0.90484	34.894	8	3	Median	1845700000	949700000	895990000	307870000	152850000	155020000	380610000	204790000	175830000	456890000	226770000	230120000	700310000	365290000	335020000	60170	2751	56689	367027;367028;367029;367030;367031;367032;367033;367034;367035;367036;367037;367038;367039;367040;367041;367042;367043;367044;367045;367046;367047;367048;367049;367050;367051;367052;367053;367054;367055;367056	495654;495655;495656;495657;495658;495659;495660;495661;495662;495663;495664;495665;495666;495667;495668;495669;495670;495671;495672;495673;495674;495675;495676;495677;495678;495679;495680;495681;495682;495683;495684;495685;495686;495687;495688;495689;495690;495691;495692;495693;495694;495695;495696;495697;495698;495699;495700;495701;495702;495703;495704;495705;495706;495707;495708;495709;495710	495709			56	
YWTSKPEPSTR	1	Unmodified	1350.6568	0.65681479	682	O95361;Q309B1	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	yes	no	0	0	0	1		By MS/MS			3	0			1								1			18.894	17.766	3	0.027008	14534	160511_QHF_FH_JSI10i_3	30.729	15.527			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60171	682	56690	367057	495711	495711			1	
YWVDYFK	1	Unmodified	1019.4753	0.4752686	3122	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	66.961	66.062	2	0.027475	57529	160511_QHF_FH_JSI11i_2	56.011	39.808			1.1216	1.1833	7.9037	4	1	Median	1.6451	1.3582	NaN	1	0	Median	0.94872	1.1778	NaN	1	0	Median	1.2035	1.1888	NaN	1	1	Median	1.0453	1.1328	NaN	1	0	Median	147890000	69794000	78093000	25734000	11180000	14554000	48236000	20262000	27974000	41209000	21446000	19763000	32707000	16905000	15802000	60172	3122	56691	367058;367059;367060;367061	495712;495713;495714	495714			3	
YWVPVEYEEEEK	1	Unmodified	1598.7141	0.7140549	2344	Q13045	FLII	Protein flightless-1 homolog	yes	yes	0	0	0	0	By MS/MS			By MS/MS	1.75	0.433	1	3								1			3	62.619	61.311	2	0.00069572	55829	160511_QHF_FH_JSI12i_1	71.016	60.645			1.2136	1.3073	38.94	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2136	1.3073	38.94	2	1	Median	63700000	28757000	34942000	0	0	0	0	0	0	0	0	0	63700000	28757000	34942000	60173	2344	56692	367062;367063;367064;367065	495715;495716;495717;495718	495717			4	
YYADGEDAYAMK	1	Unmodified	1395.5653	0.56528217	1514	P41227;Q9BSU3	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	4									1	1	1	1	35.258	34.653	2	3.9781E-06	31319	160511_QHF_FH_JSI12i_1	119.68	104.07			2.0528	1.9072	23.814	4	4	Median	1.9955	1.6455	NaN	1	1	Median	2.1356	2.5415	NaN	1	1	Median	1.5899	1.5409	NaN	1	1	Median	2.1118	2.2104	NaN	1	1	Median	897960000	272150000	625810000	156850000	57658000	99194000	297390000	83834000	213560000	209520000	59395000	150130000	234190000	71262000	162930000	60174	1514	56693	367066;367067;367068;367069	495719;495720;495721;495722	495720			4	
YYAFPQMITPLVTK	1	Unmodified	1670.8742	0.87420113	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.07	0.799	4	5	5							2	4	5	3	99.093	98.98	2;3	0.00045559	80399	160511_QHF_FH_JSI9i_3	95.81	73.277			0.78433	0.79326	24.85	13	9	Median	0.85991	0.72635	12.21	2	2	Median	0.69783	0.83902	21.757	4	2	Median	0.82054	0.80699	28.374	4	3	Median	0.83897	0.93929	40.766	3	2	Median	919660000	531700000	387960000	211790000	129880000	81910000	203480000	113140000	90344000	328610000	193470000	135140000	175780000	95208000	80568000	60175	2532	56694	367070;367071;367072;367073;367074;367075;367076;367077;367078;367079;367080;367081;367082;367083	495723;495724;495725;495726;495727;495728;495729;495730;495731;495732;495733;495734;495735;495736;495737;495738;495739	495733			17	
YYAFPQMITPLVTKG	1	Unmodified	1727.8957	0.89566485	2532	Q14353	GAMT	Guanidinoacetate N-methyltransferase	yes	yes	0	0	0	1	By MS/MS		By MS/MS	By MS/MS	2	0		3								1		1	1	99.112	99.023	2	8.7647E-05	87066	160511_QHF_FH_JSI11i_2	78.653	64.091			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	4758300	4758300	0	4758300	4758300	0	0	0	0	0	0	0	0	0	0	60176	2532	56695	367084;367085;367086	495740;495741;495742	495742			3	
YYASEIAGQTTSK	1	Unmodified	1417.6725	0.67252444	1571	P45954	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	4.25	5.63	3						1			1	1	1	1	31.187	28.286	2	5.2695E-07	25480	160511_QHF_FH_JSI12i_1	134.13	118.25			0.95432	0.97075	10.419	4	1	Median	1.4399	1.1385	NaN	1	1	Median	0.78356	0.91817	NaN	1	0	Median	1.0279	1.0263	NaN	1	0	Median	0.88598	0.91512	NaN	1	0	Median	123100000	65624000	57476000	26097000	9072000	17025000	52121000	34753000	17368000	3439100	1576700	1862400	41443000	20223000	21220000	60177	1571	56696	367087;367088;367089;367090	495743;495744;495745;495746;495747	495744			5	
YYCQNFAPNFK	1	Unmodified	1450.634	0.63397086	4217	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	2	0		2										1	1	53.761	52.811	2	3.1152E-05	45612	160511_QHF_FH_JSI11i_2	98.629	89.671			1.4418	1.5149	25.303	2	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.277	1.2668	NaN	1	0	Median	1.6279	1.8118	NaN	1	0	Median	49712000	16865000	32847000	0	0	0	0	0	0	29365000	10352000	19014000	20346000	6513000	13833000	60178	4217	56697	367091;367092	495748;495749	495749			2	
YYDDTYPSVK	1	Unmodified	1249.5503	0.55028404	1966	P61923	COPZ1	Coatomer subunit zeta-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.17	4.84	5						1			1	2	2	1	34.847	32.74	2	1.2584E-07	29547	160511_QHF_FH_JSI12i_1	120.99	115.21			0.78077	0.88009	19.899	6	2	Median	1.1432	0.92908	NaN	1	0	Median	0.74541	0.88009	4.7442	2	0	Median	0.99156	0.95331	42.432	2	2	Median	0.78925	0.82726	NaN	1	0	Median	2627800000	1228200000	1399600000	428160000	171450000	256710000	558680000	249300000	309380000	1186300000	556760000	629520000	454720000	250730000	203990000	60179	1966	56698	367093;367094;367095;367096;367097;367098	495750;495751;495752;495753;495754;495755;495756;495757;495758;495759;495760;495761	495754			12	
YYDEIINALEEDPAAQK	1	Unmodified	1980.9317	0.93165225	236	O15031	PLXNB2	Plexin-B2	yes	yes	0	0	0	0	By MS/MS	By MS/MS			1	0	5									4	1			82.226	81.725	2;3	0.00031591	72694	160511_QHF_FH_JSI9i_1	70.438	56.721			0.33034	0.32508	16.319	2	2	Median	0.44863	0.36484	NaN	1	1	Median	0.24324	0.28965	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	80517000	63748000	16769000	26786000	17995000	8791400	53730000	45753000	7977600	0	0	0	0	0	0	60180	236	56699	367099;367100;367101;367102;367103	495762;495763;495764;495765;495766	495766			5	
YYDILKK	2	Unmodified	941.52222	0.52221879	300	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	33.22	32.294	3	0.0064132	28098	160511_QHF_FH_JSI9i_2	54.549	26.375			0.28985	0.32084	90.022	4	4	Median	1.0371	0.90931	NaN	1	1	Median	0.33424	0.40999	NaN	1	1	Median	0.25137	0.25108	NaN	1	1	Median	0.10009	0.10599	NaN	1	1	Median	157310000	106500000	50809000	27408000	13545000	13863000	45441000	30383000	15058000	61017000	41310000	19707000	23444000	21262000	2182000	60181	300	56700	367104;367105;367106;367107	495767;495768;495769;495770	495768			4	
YYDQICSIEPK	1	Unmodified	1414.6439	0.64386684	3766	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	2											1	1	47.605	47.07	2	0.00032695	42817	160511_QHF_FH_JSI12i_1	75.197	68.344			1.4235	1.4172	14.161	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.321	1.2821	NaN	1	1	Median	1.5339	1.5664	NaN	1	0	Median	149470000	67808000	81662000	0	0	0	0	0	0	81554000	39237000	42317000	67916000	28571000	39345000	60182	3766	56701	367108;367109	495771;495772	495772			2	
YYDSRPGGYGYGYGR	0	Unmodified	1729.7485	0.74848335	2141	P98179	RBM3	RNA-binding protein 3	yes	yes	0	0	0	1	By MS/MS	By MS/MS			3	0			7							3	4			34.598	33.17	3	0.021135	27044	160511_QHF_FH_JSI9i_3	37.156	33.096			1.1937	1.1237	11.258	6	0	Median	1.4021	1.1458	9.1638	3	0	Median	0.92523	1.0421	12.976	3	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	163940000	78048000	85891000	92440000	38852000	53588000	71500000	39196000	32303000	0	0	0	0	0	0	60183	2141	56702	367110;367111;367112;367113;367114;367115;367116	495773;495774;495775;495776	495776			4	
YYDVMSDEEIER	0	Unmodified	1547.645	0.64498906	294	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	51.071	50.573	2	3.1066E-07	45917	160511_QHF_FH_JSI12i_1	128.03	116.82			0.73692	0.83942	43.271	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.65006	0.75896	NaN	1	0	Median	1.8063	1.783	NaN	1	1	Median	1.267	1.3129	NaN	1	0	Median	290020000	137100000	152920000	0	0	0	106570000	68786000	37782000	93950000	28458000	65492000	89504000	39861000	49643000	60184	294	56703	367117;367118;367119	495777;495778;495779;495780	495778			4	
YYEAADTVTQFDNVR	0	Unmodified	1790.8111	0.81114318	3685	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	10									2	3	2	3	59.932	59.316	2;3	3.034E-65	52688	160511_QHF_FH_JSI9i_1	280.56	247.56			0.85382	0.85135	17.4	9	3	Median	0.91416	0.75934	17.701	2	1	Median	0.70541	0.81807	8.1061	3	2	Median	0.91645	0.8788	12.953	2	0	Median	1.0589	1.108	6.4914	2	0	Median	1017600000	544560000	472990000	219650000	122490000	97158000	421250000	232780000	188470000	198790000	105820000	92970000	177870000	83473000	94394000	60185	3685	56704	367120;367121;367122;367123;367124;367125;367126;367127;367128;367129	495781;495782;495783;495784;495785;495786;495787;495788;495789;495790;495791	495790			11	
YYECDVLPFMEIGSVAHK	1	Unmodified	2156.9911	0.99109816	2958	Q5T9L3	WLS	Protein wntless homolog	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		94.473	94.077	3	0.00036723	82732	160511_QHF_FH_JSI11i_2	62.765	59.757			0.95742	0.97162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.95742	0.97162	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23525000	14942000	8582900	0	0	0	0	0	0	23525000	14942000	8582900	0	0	0	60186	2958	56705	367130	495792	495792			1	
YYEGYYAAGPGYGGR	0	Unmodified	1642.7052	0.70522155	3927	Q93052	LPP	Lipoma-preferred partner	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.25	6.78		5							3	2	2	3	1	44.616	42.19	2	2.0927E-06	36437	160511_QHF_FH_JSI11i_2	129.16	117.29			1.2363	1.2904	24.321	6	3	Median	1.4281	1.256	NaN	1	0	Median	0.88829	1.0931	27.276	2	2	Median	1.7372	1.7201	0.52145	2	1	Median	1.0703	1.21	NaN	1	0	Median	169730000	69417000	100310000	31214000	12668000	18547000	45171000	23800000	21371000	44460000	11657000	32803000	48881000	21292000	27588000	60187	3927	56706	367131;367132;367133;367134;367135;367136;367137;367138	495793;495794;495795;495796;495797;495798;495799;495800;495801;495802	495799			10	
YYELLLVNPIWLVPPTK	1	Unmodified	2057.1601	0.16013604	4237	Q96S66	CLCC1	Chloride channel CLIC-like protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS			16	0									2	1	1			98.368	90.941	2	1.2119E-10	54099	160513_QHF_FH_JSI10Kac_6	123.1	82.52			1.2488	1.2549	0.60548	2	0	Median	1.4576	1.2495	NaN	1	0	Median	1.0699	1.2603	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	155820000	64580000	91239000	88178000	36565000	51613000	67641000	28016000	39626000	0	0	0	0	0	0	60188	4237	56707	367139;367140	495803;495804	495804			2	
YYFAVDTMYVGR	0	Unmodified	1483.6806	0.6805867	2876	Q5BJH7	YIF1B	Protein YIF1B	yes	yes	0	0	0	0	By MS/MS				16	0									1	1				79.384	70.755	2	2.8493E-05	38232	160513_QHF_FH_JSI9Kac_6	96.89	82.199			1.1709	0.99634	NaN	1	0	Median	1.1709	0.99634	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	26373000	17006000	9366700	26373000	17006000	9366700	0	0	0	0	0	0	0	0	0	60189	2876	56708	367141	495805;495806	495805			2	
YYFAVDTMYVGR	0	Oxidation (M)	1499.6755	0.67550132	2876	Q5BJH7	YIF1B	Protein YIF1B	yes	yes	0	0	1	0				By MS/MS	16	0									1				1	73.948	64.505	2	0.0017055	33764	160513_QHF_FH_JSI12Kac_6	87.913	54.688			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60190	2876	56708	367142	495807	495807		2162	1	
YYFAVDTMYVGRK	1	Unmodified	1611.7755	0.77554972	2876	Q5BJH7	YIF1B	Protein YIF1B	yes	yes	0	0	0	1	By MS/MS	By MS/MS			9.5	6.5			2						2	3	1			66.602	65.111	3	0.00034377	54523	160511_QHF_FH_JSI10i_3	63.181	58.102			1.6494	1.6181	34.898	2	1	Median	2.4774	2.0709	NaN	1	1	Median	1.0981	1.2642	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38312000	15611000	22701000	14308000	5019900	9287600	24004000	10591000	13413000	0	0	0	0	0	0	60191	2876	56709	367143;367144;367145;367146	495808;495809;495810;495811	495808			4	
YYFEGIK	1	Unmodified	918.44872	0.4487195	694	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.8	0.4	1	4								1	1	2	1	47.458	46.59	2	0.013952	39926	160511_QHF_FH_JSI11i_2	66.993	44.862			1.1287	1.038	16.201	5	0	Median	1.1287	0.9422	NaN	1	0	Median	0.8403	1.038	NaN	1	0	Median	1.0567	1.0569	23.591	2	0	Median	1.1568	1.2793	NaN	1	0	Median	1640600000	796060000	844490000	226330000	117650000	108680000	356340000	197390000	158950000	678530000	308160000	370370000	379360000	172860000	206500000	60192	694	56710	367147;367148;367149;367150;367151	495812;495813;495814;495815;495816	495814			5	
YYFILSPYR	0	Unmodified	1220.623	0.62299547	3713	Q8TCY9	URGCP	Up-regulator of cell proliferation	yes	yes	0	0	0	0	By MS/MS	By MS/MS		By MS/MS	16	0									3	1	1		1	81.177	73.286	2	0.0013403	38461	160513_QHF_FH_JSI12Kac_6	86.011	71.854			0.94408	0.89807	12.072	3	1	Median	1.0539	0.89807	NaN	1	1	Median	0.94408	1.0847	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	0.81473	0.86639	NaN	1	0	Median	222210000	114760000	107450000	61421000	29938000	31483000	114560000	62217000	52344000	0	0	0	46225000	22601000	23624000	60193	3713	56711	367152;367153;367154	495817;495818;495819	495818			3	
YYFNNPEDGFFK	1	Unmodified	1539.667	0.66704513	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.2	0.4		4	1							1	1	2	1	75.629	74.949	2	2.3952E-06	64682	160511_QHF_FH_JSI12i_2	125.48	117.83			1.0477	1.1	18.97	5	1	Median	1.1174	0.95015	NaN	1	0	Median	1.0016	1.223	NaN	1	0	Median	1.309	1.2844	27.884	2	1	Median	1.029	1.1	NaN	1	0	Median	297720000	144770000	152960000	60533000	30867000	29666000	62327000	32053000	30274000	134250000	58827000	75426000	40611000	23022000	17589000	60194	5179	56712	367155;367156;367157;367158;367159	495820;495821;495822;495823;495824;495825;495826;495827;495828	495821			9	
YYFNNPEDGFFKK	2	Unmodified	1667.762	0.76200815	5179	Q9P0I2	EMC3	ER membrane protein complex subunit 3	yes	yes	0	0	0	1		By matching		By MS/MS	3	0			2								1		1	65.603	64.709	3	0.022323	55711	160511_QHF_FH_JSI12i_3	29.491	8.1376			1.5563	1.6767	19.133	2	0	Median	NaN	NaN	NaN	0	0	Median	1.67	1.9196	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	1.4503	1.4645	NaN	1	0	Median	222130000	101940000	120190000	0	0	0	50528000	21957000	28571000	0	0	0	171600000	79987000	91616000	60195	5179	56713	367160;367161	495829	495829			1	
YYFYHGLSWPQLSYIAEDENGK	1	Unmodified	2679.2282	0.22816862	1514	P41227	NAA10	N-alpha-acetyltransferase 10	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.1	6.29			3						5	1	1	4	2	92.711	87.39	3	5.7016E-107	43991	160513_QHF_FH_JSI9Kac_6	240.82	230.49			1.1111	1.0578	8.5809	8	2	Median	1.168	0.97971	NaN	1	0	Median	0.87702	1.052	NaN	1	0	Median	1.1417	1.0884	8.6113	4	2	Median	0.99598	1.0522	15.606	2	0	Median	1564500000	757900000	806560000	205270000	97167000	108100000	466950000	246120000	220840000	324950000	127000000	197950000	567290000	287620000	279670000	60196	1514	56714	367162;367163;367164;367165;367166;367167;367168;367169	495830;495831;495832;495833;495834;495835;495836;495837;495838;495839;495840;495841;495842;495843	495838			14	
YYGAQTVR	0	Unmodified	956.47158	0.4715802	887	P07954	FH	Fumarate hydratase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9.31	6.79	1	4	1					3	4	2	3	4	4	17.323	12.642	2	0.0013369	7709	160513_QHF_FH_JSI11Kac_6	100.19	47.505			0.99121	1.0683	10.987	13	0	Median	1.259	1.0534	3.1949	2	0	Median	0.72312	0.88222	14.613	3	0	Plateau	1.028	1.0479	9.8437	4	0	Median	1.0882	1.1908	10.725	4	0	Median	3926200000	1886300000	2039900000	671270000	296180000	375090000	794160000	465930000	328240000	1439600000	615440000	824160000	1021200000	508730000	512430000	60197	887	56715	367170;367171;367172;367173;367174;367175;367176;367177;367178;367179;367180;367181;367182	495844;495845;495846;495847;495848;495849;495850;495851	495845			8	
YYGESLPFGDNSFK	1	Unmodified	1622.7253	0.72528829	1548	P42785	PRCP	Lysosomal Pro-X carboxypeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.57	0.495	3	4								2	1	2	2	72.406	71.639	2	1.087E-09	61815	160511_QHF_FH_JSI12i_2	145.28	137.39			0.69967	1.2546	32.458	7	6	Linear	0.81029	0.67887	31.905	2	2	Median	0.69967	0.84634	NaN	1	1	Median	0.8335	0.82709	47.002	2	2	Median	0.74806	0.81063	50.433	2	1	Median	337990000	187120000	150870000	61460000	34633000	26827000	53566000	32309000	21257000	132970000	67317000	65648000	90001000	52864000	37137000	60198	1548	56716	367183;367184;367185;367186;367187;367188;367189	495852;495853;495854;495855;495856;495857;495858;495859;495860	495854			9	
YYGGGSEGGR	0	Unmodified	1001.4203	0.42027292	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.17	5.71	3	4	2					3		1	3	4	4	7.1899	4.4152	2	1.3886E-05	4579	160511_QHF_FH_JSI10i_1	101.54	95.599			0.94998	1.0245	20.582	11	0	Median	1.2032	1.0245	NaN	1	0	Median	1.0184	1.2267	22.696	3	0	Plateau	0.94998	0.95274	19.265	3	0	Median	0.9039	0.95381	28.188	4	0	Median	1667300000	812440000	854900000	209460000	100170000	109290000	457380000	229960000	227420000	538080000	259760000	278330000	462410000	222540000	239860000	60199	1063	56717	367190;367191;367192;367193;367194;367195;367196;367197;367198;367199;367200;367201	495861;495862;495863;495864;495865;495866;495867;495868;495869;495870;495871;495872	495866			12	
YYGGGSEGGRAPK	1	Unmodified	1297.6051	0.60511357	1063	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By matching		2.6	0.49		2	3							2	2	1		8.6753	8.2566	3	0.00046079	5989	160511_QHF_FH_JSI10i_3	55.604	46.171			0.98033	1.1389	22.938	5	3	Plateau	1.0127	0.82953	32.38	2	2	Median	0.84575	1.013	17.18	2	1	Median	1.219	1.1339	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	615890000	314470000	301430000	203350000	92342000	111010000	310200000	175770000	134430000	102340000	46361000	55984000	0	0	0	60200	1063	56718	367202;367203;367204;367205;367206	495873;495874;495875;495876;495877	495873			5	
YYGLQILENVIK	1	Unmodified	1451.8024	0.8024164	231	O14980	XPO1	Exportin-1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.8	6.71		4	2						4	2	2	3	3	97.625	94.252	2	1.0673E-22	87106	160511_QHF_FH_JSI12i_2	173.71	159.03			1.1054	1.0798	33.089	10	2	Median	1.1209	0.95875	20.514	2	1	Median	1.4274	1.7316	68.142	2	1	Median	1.15	1.0902	4.2404	3	0	Plateau	0.97299	1.0437	19.716	3	0	Median	3954200000	1774900000	2179300000	390450000	171700000	218750000	736160000	340660000	395500000	1326800000	607730000	719020000	1500900000	654840000	846040000	60201	231	56719	367207;367208;367209;367210;367211;367212;367213;367214;367215;367216	495878;495879;495880;495881;495882;495883;495884;495885;495886;495887;495888	495879			11	
YYGQNGQQILSASQDGTLQSFSTVHEK	1	Unmodified	2985.4104	0.4104431	3676	Q8NI36	WDR36	WD repeat-containing protein 36	yes	yes	0	0	0	0	By MS/MS		By MS/MS		2.5	0.5		1	1							1		1		67.714	67.264	3	9.639E-17	59805	160511_QHF_FH_JSI11i_3	118.01	106.38			1.3482	1.2255	8.5777	2	2	Median	1.4923	1.3022	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	1.218	1.1534	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	37355000	9997900	27357000	13528000	3279700	10248000	0	0	0	23827000	6718200	17109000	0	0	0	60202	3676	56720	367217;367218	495889;495890;495891	495889			3	
YYGYTGAFR	0	Unmodified	1096.4978	0.49779495	66	CON__Q29443;CON__Q0IIK2;P02788	LTF	Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C	yes	no	0	0	0	0	By MS/MS	By matching	By MS/MS	By MS/MS	10	6.95	1	1	1						4	3	1	1	2	46.957	41.272	2	3.2436E-05	35259	160511_QHF_FH_JSI12i_3	101.33	83.479		+	0.95635	0.9894	15.103	7	0	Median	1.0741	0.89121	18.046	3	0	Plateau	0.95635	1.1524	NaN	1	0	Median	0.86508	0.83731	NaN	1	0	Median	0.89476	0.92889	8.9252	2	0	Median	466750000	241290000	225470000	238140000	109300000	128840000	26121000	14341000	11780000	8504600	4686700	3817900	193990000	112960000	81029000	60203	66	56721	367219;367220;367221;367222;367223;367224;367225	495892;495893;495894;495895;495896;495897	495897			6	
YYHGLSSLP	0	Unmodified	1035.5025	0.50254598	3820	Q8WYQ3	CHCHD10	Coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.67	6.6		4							2	2	1	2	1	50.751	46.942	2	0.0002904	40420	160511_QHF_FH_JSI12i_2	94.669	89.681			1.9667	1.9787	38.979	6	4	Median	2.0655	1.7754	57.508	2	1	Median	2.7802	3.453	NaN	1	1	Median	1.9667	1.9787	20.521	2	1	Median	1.4084	1.5645	NaN	1	1	Median	1781100000	479280000	1301800000	287680000	81494000	206190000	405020000	97989000	307030000	721350000	184950000	536400000	367080000	114850000	252230000	60204	3820	56722	367226;367227;367228;367229;367230;367231	495898;495899;495900;495901;495902;495903	495898			5	
YYIAASYVK	1	Unmodified	1076.5542	0.5542472	3891	Q92820	GGH	Gamma-glutamyl hydrolase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11	6.11		3	2				1	5	4	5	6	2	2	53.606	47.019	2	5.1943E-07	24893	160513_QHF_FH_JSI9Kac_6	133.55	115.51			1.1065	1.14	18.521	13	4	Median	1.1704	0.99109	21.873	4	2	Median	1.0056	1.1776	14.077	5	2	Median	1.1688	1.1525	1.5469	2	0	Median	1.3004	1.3933	29.298	2	0	Median	1316600000	695720000	620860000	356570000	171610000	184960000	362430000	197090000	165340000	547030000	304760000	242270000	50553000	22265000	28288000	60205	3891	56723	367232;367233;367234;367235;367236;367237;367238;367239;367240;367241;367242;367243;367244;367245;367246	495904;495905;495906;495907;495908;495909;495910;495911;495912;495913;495914;495915;495916;495917;495918;495919;495920;495921;495922;495923;495924;495925	495920			22	
YYIQNGIQSFMQNYSSIDVLLHQSR	0	Oxidation (M)	3019.4498	0.44980549	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By matching	By MS/MS	16	0									4	1	1	1	1	89.87	81.575	3	1.0772E-93	45158	160513_QHF_FH_JSI9Kac_6	224.99	210.23			1.2334	1.1766	4.9948	4	1	Median	1.3531	1.1727	NaN	1	0	Median	1.0001	1.1576	NaN	1	1	Median	1.3721	1.2914	NaN	1	0	Median	1.1243	1.1805	NaN	1	0	Median	223790000	116120000	107670000	63916000	30361000	33556000	55456000	34744000	20712000	52894000	25733000	27161000	51524000	25280000	26244000	60206	2094	56724	367247;367248;367249;367250	495926;495927;495928	495926		1780	3	
YYIQNGIQSFMQNYSSIDVLLHQSR	0	Unmodified	3003.4549	0.45489087	2094	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	yes	yes	0	0	0	0		By MS/MS	By matching	By MS/MS	16	0									3		1	1	1	95.602	87.414	3	1.2053E-222	47009	160513_QHF_FH_JSI12Kac_6	305.63	295.92			1.0651	1.015	6.4361	3	1	Plateau	NaN	NaN	NaN	0	0	Median	0.83072	0.99435	NaN	1	1	Median	1.1124	1.0438	NaN	1	0	Median	1.0651	1.1296	NaN	1	0	Median	1224000000	707610000	516410000	0	0	0	523650000	375680000	147970000	372750000	181280000	191480000	327610000	150650000	176960000	60207	2094	56724	367251;367252;367253	495929;495930	495929			2	
YYKNIGLGFK	2	Acetyl (K)	1243.6601	0.66010926	1996	P62280	RPS11	40S ribosomal protein S11	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	16	0									3		1	1	1	72.835	64.018	2	1.444E-05	34641	160513_QHF_FH_JSI11Kac_6	106.42	84.186			0.072007	0.073655	192.28	2	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.29868	0.28687	NaN	1	0	Median	0.01736	0.018911	NaN	1	1	Median	126720000	101610000	25114000	0	0	0	6890100	6890100	0	107460000	82435000	25022000	12373000	12281000	92109	60208	1996	56725	367254;367255;367256	495931;495932;495933	495931	2027;2028		3	
YYKVDENGK	2	Acetyl (K)	1156.5401	0.5400537	2042	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	yes	yes	1	0	0	1		By MS/MS	By MS/MS	By MS/MS	13	0						3					1	1	1	26.691	19.159	2	0.0042441	11774	160513_QHF_FH_JSI11Kac_3	76.17	65.304			0.61169	0.66476	46.923	3	0	Median	NaN	NaN	NaN	0	0	Median	0.74196	0.88301	NaN	1	0	Median	0.34963	0.3531	NaN	1	0	Median	0.61169	0.66476	NaN	1	0	Median	20388000	13299000	7089200	0	0	0	8252700	5378500	2874200	6242100	4184400	2057700	5893500	3736300	2157200	60209	2042	56726	367257;367258;367259	495934;495935;495936	495934	2105		2	
YYLEFEDTEENK	1	Unmodified	1578.6726	0.67258402	5546	Q9Y2Y0	ARL2BP	ADP-ribosylation factor-like protein 2-binding protein	yes	yes	0	0	0	0			By MS/MS		1	0	1											1		57.503	57.085	2	0.00011144	51791	160511_QHF_FH_JSI11i_1	114.4	105.7			1.0726	1.0351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.0726	1.0351	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	28598000	12983000	15616000	0	0	0	0	0	0	28598000	12983000	15616000	0	0	0	60210	5546	56727	367260	495937	495937			0	
YYLHDDREGEGSDK	1	Unmodified	1682.7172	0.7172428	5542	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	yes	yes	0	0	0	1			By MS/MS		3	0			1									1		14.263	14.263	3	0.044374	11527	160511_QHF_FH_JSI11i_3	28.546	10.174			1.2851	1.2136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.2851	1.2136	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	31019000	14061000	16958000	0	0	0	0	0	0	31019000	14061000	16958000	0	0	0	60211	5542	56728	367261	495938	495938			1	
YYLQDGDLDVVFASSSK	1	Unmodified	1905.8996	0.89962384	1005	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	4										2	1	1	86.171	85.842	2	1.6872E-10	78154	160511_QHF_FH_JSI12i_1	138.42	116.86			1.1208	1.0813	19.274	3	3	Median	NaN	NaN	NaN	0	0	Median	0.66905	0.78934	NaN	1	1	Median	1.1208	1.0813	NaN	1	1	Median	1.1339	1.1203	NaN	1	1	Median	33688000	18182000	15506000	0	0	0	15191000	10278000	4912500	6091500	3609700	2481800	12405000	4293700	8111400	60212	1005	56729	367262;367263;367264;367265	495939;495940;495941;495942	495940			4	
YYMLNIEAAK	1	Unmodified	1214.6005	0.60054547	5687	Q9Y5X3	SNX5	Sorting nexin-5	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		2	0		3								1	1	1		62.818	62.132	2	8.6316E-05	54128	160511_QHF_FH_JSI11i_2	86.136	66.432			0.91405	1.024	14.579	2	1	Median	NaN	NaN	NaN	0	0	Median	0.75351	0.92367	NaN	1	1	Median	1.1088	1.1352	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	93588000	36898000	56690000	0	0	0	34920000	17351000	17569000	58668000	19546000	39122000	0	0	0	60213	5687	56730	367266;367267;367268	495943;495944;495945	495944			3	
YYMNQVEETR	0	Unmodified	1331.5816	0.58160094	1787	P52888	THOP1	Thimet oligopeptidase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.5	0.5	6	6								3	3	4	2	30.037	29.324	2	8.6371E-07	24733	160511_QHF_FH_JSI11i_2	123.86	110.82			0.78168	0.85768	28.347	9	6	Median	1.0074	0.8396	3.0128	2	1	Median	0.76212	0.89954	6.4828	2	1	Median	0.65356	0.66636	54.297	3	3	Plateau	0.76054	0.81895	11.525	2	1	Median	780980000	400450000	380530000	121910000	60423000	61491000	215430000	106770000	108660000	226900000	121900000	105000000	216740000	111360000	105380000	60214	1787	56731	367269;367270;367271;367272;367273;367274;367275;367276;367277;367278;367279;367280	495946;495947;495948;495949;495950;495951;495952;495953;495954;495955;495956;495957;495958;495959	495957			14	
YYNAESYEVER	0	Unmodified	1421.6099	0.60992418	4880	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	yes	yes	0	0	0	0		By MS/MS	By MS/MS	By MS/MS	1	0	3										1	1	1	32.566	32.277	2	0.00038239	28839	160511_QHF_FH_JSI10i_1	72.607	57.933			0.98389	1.0546	15.462	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0053	1.1764	NaN	1	0	Median	0.9629	0.94539	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	79764000	37659000	42106000	0	0	0	38013000	19930000	18082000	41752000	17728000	24023000	0	0	0	60215	4880	56732	367281;367282;367283	495960;495961;495962;495963	495962			4	
YYNAWIER	0	Unmodified	1113.5243	0.52434406	5217	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	yes	yes	0	0	0	0	By MS/MS			By MS/MS	16	0									2	1			1	56.842	47.321	3	0.043281	25099	160513_QHF_FH_JSI9Kac_6	24.155	4.912			38.058	39.079	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	38.058	39.079	NaN	1	1	Median	93872000	158870	93713000	74672000	0	74672000	0	0	0	0	0	0	19200000	158870	19041000	60216	5217	56733	367284;367285	495964;495965	495964			2	
YYNDYGDIIK	1	Unmodified	1262.5819	0.58191851	3521;3784	Q8N3U4;Q8WVM7	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By matching	1	0	5									2	1	1	1	51.746	50.972	2	8.0354E-05	45297	160511_QHF_FH_JSI11i_1	87.258	73.488			1.0301	1.1588	46.212	5	1	Median	1.8012	1.4763	86.207	2	1	Median	0.98054	1.1588	NaN	1	0	Median	1.0301	1.001	NaN	1	0	Median	1.1582	1.219	NaN	1	0	Median	462960000	200430000	262530000	99034000	27992000	71042000	110220000	53161000	57056000	144390000	69785000	74602000	109320000	49493000	59826000	60217	3521;3784	56734	367286;367287;367288;367289;367290	495966;495967;495968;495969;495970	495966			5	
YYNKYINVK	2	Acetyl (K)	1245.6394	0.63937381	1869	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	yes	yes	1	0	0	1		By MS/MS	By MS/MS		15	0								2			1	1		57.251	46.526	2	0.00035272	25554	160513_QHF_FH_JSI11Kac_5	102.51	89.887			0.51167	0.55476	117.32	2	0	Median	NaN	NaN	NaN	0	0	Median	1.0753	1.2717	NaN	1	0	Median	0.24347	0.242	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	29304000	21540000	7763700	0	0	0	4761300	1888300	2873000	24543000	19652000	4890700	0	0	0	60218	1869	56735	367291;367292	495971;495972	495972	1889		2	
YYNSDVHR	0	Unmodified	1052.4676	0.46755746	1163	P19623	SRM	Spermidine synthase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2.36	0.481		7	4							2	2	4	3	7.9089	7.6612	2;3	4.9256E-05	5067	160511_QHF_FH_JSI12i_3	135.84	107.33			0.98641	0.96587	13.396	11	0	Median	1.2713	1.0936	4.7576	2	0	Median	0.6918	0.84104	0.73824	2	0	Median	0.97157	0.96167	10.47	4	0	Median	1.1255	1.1465	16.933	3	0	Median	1178800000	601800000	577050000	95384000	41628000	53756000	184030000	96523000	87509000	480160000	242650000	237510000	419270000	221000000	198270000	60219	1163	56736	367293;367294;367295;367296;367297;367298;367299;367300;367301;367302;367303	495973;495974;495975;495976;495977;495978;495979;495980;495981;495982;495983	495983			11	
YYNYCLIHNVQR	0	Unmodified	1641.7722	0.77219568	3755	Q8WUA2	PPIL4	Peptidyl-prolyl cis-trans isomerase-like 4	yes	yes	0	0	0	0		By MS/MS	By matching	By matching	16	0									3		1	1	1	53.792	44.405	3	4.7045E-05	24340	160513_QHF_FH_JSI10Kac_6	88.338	79.288			0.94447	1.1286	24.425	3	0	Median	NaN	NaN	NaN	0	0	Median	0.94447	1.1286	NaN	1	0	Median	0.83861	0.82056	NaN	1	0	Median	1.2074	1.326	NaN	1	0	Median	45256000	20740000	24516000	0	0	0	25630000	11588000	14042000	11478000	5499100	5978800	8148100	3653200	4494900	60220	3755	56737	367304;367305;367306	495984;495985	495984			2	
YYPNNETESILGR	0	Unmodified	1554.7314	0.7314363	3629	Q8NDF8	PAPD5	Non-canonical poly(A) RNA polymerase PAPD5	yes	yes	0	0	0	0			By MS/MS		2	0		1										1		52.266	51.74	2	0.026844	44677	160511_QHF_FH_JSI11i_2	42.336	35.803			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60221	3629	56738	367307	495986	495986			1	
YYPTEDVPR	0	Unmodified	1138.5295	0.52948901	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	2	0		4								1	1	1	1	36.204	35.261	2	0.00023652	30122	160511_QHF_FH_JSI11i_2	84.498	67.133			0.77645	0.84392	53.024	4	2	Median	2.1417	1.851	NaN	1	1	Median	0.4173	0.51605	NaN	1	1	Median	0.86081	0.89226	NaN	1	0	Median	0.70035	0.7982	NaN	1	0	Median	323750000	171710000	152040000	106980000	34926000	72058000	59470000	39697000	19773000	92084000	53985000	38099000	65210000	43103000	22107000	60222	2196	56739	367308;367309;367310;367311	495987;495988;495989;495990	495989			4	
YYPTEDVPRK	1	Unmodified	1266.6245	0.62445203	2196	Q02878	RPL6	60S ribosomal protein L6	yes	yes	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.46	6.14	3	8	8				1	4	4	6	7	8	7	29.65	26.17	2;3	2.6892E-10	21891	160511_QHF_FH_JSI12i_3	138.54	133.34			0.89496	0.92028	18.614	28	0	Median	0.91318	0.7438	13.626	6	0	Median	0.88448	1.0266	15.947	7	0	Median	0.94615	0.94526	14.052	8	0	Median	0.84771	0.90882	21.391	7	0	Median	22678000000	10522000000	12156000000	2143700000	1048600000	1095000000	4106700000	1960600000	2146100000	8638400000	3877500000	4760900000	7789400000	3635500000	4153900000	60223	2196	56740	367312;367313;367314;367315;367316;367317;367318;367319;367320;367321;367322;367323;367324;367325;367326;367327;367328;367329;367330;367331;367332;367333;367334;367335;367336;367337;367338;367339	495991;495992;495993;495994;495995;495996;495997;495998;495999;496000;496001;496002;496003;496004;496005;496006;496007;496008;496009;496010;496011;496012;496013;496014;496015;496016;496017;496018;496019;496020;496021;496022;496023;496024;496025;496026;496027;496028;496029;496030;496031;496032;496033;496034;496035;496036;496037;496038;496039;496040;496041;496042	496041			52	
YYPYQSFQTPQHPSFLFQDK	1	Unmodified	2520.175	0.17501084	2271	Q08380	LGALS3BP	Galectin-3-binding protein	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	7.11	6.3		2	4						3	3	2	2	2	83.615	80.146	3	7.7099E-19	74942	160511_QHF_FH_JSI11i_3	155.93	148.12			0.90173	0.9533	11.677	9	3	Median	1.3007	1.0905	11.507	3	1	Median	0.79123	0.94543	1.1713	2	1	Median	0.89204	0.85364	15.968	2	1	Median	0.86473	0.9206	10.821	2	0	Median	1373400000	697300000	676140000	243490000	112540000	130960000	246580000	135180000	111390000	491520000	248700000	242820000	391850000	200880000	190970000	60224	2271	56741	367340;367341;367342;367343;367344;367345;367346;367347;367348	496043;496044;496045;496046;496047;496048;496049;496050;496051;496052;496053;496054;496055;496056;496057;496058;496059;496060;496061;496062;496063;496064;496065	496045			23	
YYQLFLDSLRDPNK	1	Unmodified	1770.8941	0.89408495	4047	Q96EK5	KIAA1279	KIF1-binding protein	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			4								1	2	1	75.757	75.332	3	0.0035566	66882	160511_QHF_FH_JSI11i_3	57.414	49.072			0.51057	0.52804	146.08	4	3	Median	NaN	NaN	NaN	0	0	Median	0.66795	0.7705	NaN	1	0	Median	1.4974	1.3912	190.44	2	2	Median	0.16953	0.18126	NaN	1	1	Median	389290000	175730000	213560000	0	0	0	67942000	31564000	36379000	273310000	109420000	163890000	48032000	34746000	13286000	60225	4047	56742	367349;367350;367351;367352	496066;496067;496068;496069	496066			4	
YYQTIGNHASYYK	1	Unmodified	1606.7416	0.74160705	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	6.1	5.99		11	11						8	7	10	6	7	32.765	29.597	2;3	7.6253E-16	24583	160511_QHF_FH_JSI12i_3	143.98	143.29			0.95452	0.94497	42.695	28	13	Median	1.1919	1.05	22.597	7	5	Median	0.8195	0.97994	54.579	8	4	Median	0.93565	0.9064	19.073	6	1	Median	0.90169	0.91214	55.915	7	3	Median	2673100000	1331800000	1341300000	301340000	140850000	160490000	487860000	244440000	243420000	901960000	434390000	467570000	981960000	512110000	469850000	60226	5441	56743	367353;367354;367355;367356;367357;367358;367359;367360;367361;367362;367363;367364;367365;367366;367367;367368;367369;367370;367371;367372;367373;367374;367375;367376;367377;367378;367379;367380;367381;367382	496070;496071;496072;496073;496074;496075;496076;496077;496078;496079;496080;496081;496082;496083;496084;496085;496086;496087;496088;496089;496090;496091;496092;496093;496094;496095;496096;496097;496098;496099;496100;496101;496102;496103;496104;496105;496106;496107;496108;496109;496110;496111;496112;496113;496114;496115;496116;496117;496118;496119;496120;496121;496122	496112			52	
YYQTIGNHASYYKDALR	1	Acetyl (K)	2104.0014	0.0014035686	5441	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	yes	yes	1	0	0	1			By MS/MS		16	0									1			1		63.852	54.167	3	2.0233E-06	29354	160513_QHF_FH_JSI11Kac_6	150.45	135.87			0.15662	0.15297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0.15662	0.15297	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	23641000	22422000	1219100	0	0	0	0	0	0	23641000	22422000	1219100	0	0	0	60227	5441	56744	367383	496123	496123	3425		1	
YYRPTEVDFLQGDCTK	1	Unmodified	1990.9095	0.90947702	427	O60547	GMDS	GDP-mannose 4,6 dehydratase	yes	yes	0	0	0	1		By MS/MS	By MS/MS	By MS/MS	3	0			3								1	1	1	56.399	55.803	3	7.5867E-05	46758	160511_QHF_FH_JSI10i_3	78.95	72.787			0.98671	0.90929	17.822	3	0	Plateau	NaN	NaN	NaN	0	0	Median	1.128	1.2799	NaN	1	0	Median	0.98671	0.90929	NaN	1	0	Median	1.1088	1.1773	NaN	1	0	Median	239230000	101980000	137250000	0	0	0	40977000	15763000	25213000	149850000	66178000	83676000	48400000	20035000	28365000	60228	427	56745	367384;367385;367386	496124;496125;496126;496127;496128;496129;496130	496127			7	
YYSFFDLNPK	1	Unmodified	1292.6077	0.60773933	3965;4363	Q96AC1;Q9BQL6	FERMT2;FERMT1	Fermitin family homolog 2;Fermitin family homolog 1	no	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	11.3	6.6		2							4	1	1	2	2	80.883	75.089	2	5.8885E-06	39811	160513_QHF_FH_JSI11Kac_6	113.62	100.83			0.679	0.77409	35.4	6	0	Median	1.1508	0.98943	NaN	1	0	Median	0.6459	0.76156	NaN	1	0	Median	0.73414	0.7297	31.761	2	0	Median	0.50984	0.5449	51.958	2	0	Median	823450000	447850000	375600000	44869000	24184000	20685000	47605000	28221000	19384000	464480000	243330000	221150000	266490000	152110000	114380000	60229	3965;4363	56746	367387;367388;367389;367390;367391;367392	496131;496132;496133;496134;496135;496136;496137	496132			7	
YYSIASSSK	1	Unmodified	1004.4815	0.48147619	1100	P16435	POR	NADPH--cytochrome P450 reductase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.41	6.36		5	4				2	3	3	3	5	5	4	22.261	17.885	2	3.6579E-05	15500	160511_QHF_FH_JSI9i_2	99.442	87.086			0.91807	0.96058	29.471	17	4	Median	1.007	0.65771	17.172	3	0	Plateau	0.81507	0.96058	18.295	5	1	Median	1.0042	0.98914	47.107	5	3	Median	0.92536	1.0305	20.185	4	0	Median	2940100000	1463800000	1476300000	527790000	250640000	277150000	410110000	235920000	174190000	1287600000	649270000	638310000	714620000	327940000	386670000	60230	1100	56747	367393;367394;367395;367396;367397;367398;367399;367400;367401;367402;367403;367404;367405;367406;367407;367408;367409	496138;496139;496140;496141;496142;496143;496144;496145;496146;496147;496148;496149;496150;496151;496152;496153;496154	496145			17	
YYSLDELSEK	1	Unmodified	1245.5765	0.57649879	4369	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	yes	yes	0	0	0	0			By MS/MS	By MS/MS	1	0	3											1	2	52.607	52.069	2	0.0057423	47389	160511_QHF_FH_JSI12i_1	63.184	51.337			1.073	1.0669	24.65	2	2	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	1.3285	1.27	NaN	1	1	Median	0.86667	0.89623	NaN	1	1	Median	77454000	35211000	42243000	0	0	0	0	0	0	46666000	20442000	26224000	30788000	14769000	16019000	60231	4369	56748	367410;367411;367412	496155;496156;496157	496156			3	
YYSSEYHYVGGFYGGCNEALMK	1	Unmodified	2594.0882	0.08824602	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	9	7		4							4	1	3	2	2	70.881	65.518	3	2.8355E-89	35594	160513_QHF_FH_JSI10Kac_6	221.48	211.63			1.0476	0.9957	27.724	7	2	Median	1.1193	0.95936	NaN	1	0	Median	0.77884	0.92077	11.065	2	1	Median	1.0341	1.0001	4.3484	2	1	Median	1.5094	1.628	20.246	2	0	Median	441910000	215960000	225950000	72814000	35445000	37369000	152080000	89624000	62453000	139280000	60731000	78547000	77739000	30157000	47582000	60232	1806	56749	367413;367414;367415;367416;367417;367418;367419;367420	496158;496159;496160;496161;496162;496163;496164;496165;496166;496167;496168;496169;496170	496170			13	
YYSSEYHYVGGFYGGCNEALMK	1	Oxidation (M)	2610.0832	0.083160642	1806	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									4	1	1	1	1	68.081	59.077	3	2.2062E-11	32458	160513_QHF_FH_JSI10Kac_6	100.53	100.29			1.0466	1.0379	20.079	4	1	Median	1.2707	1.0341	NaN	1	0	Median	0.8986	1.0416	NaN	1	0	Median	0.82085	0.80961	NaN	1	1	Median	1.2189	1.3239	NaN	1	0	Median	58250000	29846000	28404000	15746000	5064300	10682000	11996000	7251400	4744800	13382000	7665700	5716400	17125000	9864400	7261000	60233	1806	56749	367421;367422;367423;367424	496171;496172;496173;496174;496175;496176;496177	496177		1495	7	
YYSSHYMTLVVQSK	1	Unmodified	1704.8181	0.81814282	387	O43847	NRD1	Nardilysin	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	13.4	5.2			2						8	3	3	2	2	58.907	51.167	2;3	2.5146E-81	28034	160513_QHF_FH_JSI10Kac_6	240.12	227.55			0.97871	0.92249	22.758	10	2	Median	0.99423	0.84717	17.693	3	0	Median	0.71562	0.84447	9.0391	3	0	Plateau	1.3429	1.2842	36.488	2	1	Median	0.91581	0.98089	27.111	2	1	Median	2456100000	1264200000	1191800000	762310000	346800000	415510000	994970000	572500000	422470000	381460000	167610000	213850000	317310000	177320000	139990000	60234	387	56750	367425;367426;367427;367428;367429;367430;367431;367432;367433;367434	496178;496179;496180;496181;496182;496183;496184;496185;496186;496187;496188;496189;496190;496191;496192;496193;496194;496195;496196;496197;496198;496199;496200;496201	496200			24	
YYSSHYMTLVVQSK	1	Oxidation (M)	1720.8131	0.81305744	387	O43847	NRD1	Nardilysin	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	16	0									7	2	2	1	2	45.852	36.641	2;3	1.8421E-30	20224	160513_QHF_FH_JSI10Kac_6	169.23	133.72			1.0536	0.94295	13.357	7	0	Median	1.0676	0.92016	2.9374	2	0	Median	0.83575	0.98916	6.7665	2	0	Median	1.1323	1.0367	NaN	1	0	Median	0.90137	0.96765	30.141	2	0	Median	479990000	247410000	232580000	161360000	88229000	73128000	179180000	96338000	82845000	56490000	24453000	32038000	82956000	38390000	44566000	60235	387	56750	367435;367436;367437;367438;367439;367440;367441	496202;496203;496204;496205;496206;496207;496208;496209;496210;496211	496210		156	10	
YYSYGLEK	1	Unmodified	1021.4757	0.47566253	3132	Q6PKG0	LARP1	La-related protein 1	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS		1.8	0.4	1	4								1	1	3		31.715	31.16	2	0.0058914	26350	160511_QHF_FH_JSI11i_2	60.91	38.779			1.1252	1.1466	72.578	3	0	Plateau	1.2947	1.1137	NaN	1	0	Median	NaN	NaN	NaN	0	0	Median	2.1416	2.134	87.842	2	0	Median	NaN	NaN	NaN	0	0	Median	285880000	148320000	137560000	107960000	47891000	60067000	0	0	0	177920000	100430000	77494000	0	0	0	60236	3132	56751	367442;367443;367444;367445;367446	496212;496213;496214;496215;496216	496215			5	
YYTEFPTVLDITAEDPSK	1	Unmodified	2087.9939	0.99391815	220	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1	0	9									3	2	2	2	95.825	95.526	2;3	5.1598E-16	86645	160511_QHF_FH_JSI10i_1	194.12	184.07			0.88465	1.0072	4.7147	8	0	Linear	1.1813	0.96544	0.39491	2	0	Median	0.86522	1.0104	1.33	2	0	Median	1.0626	1.0027	1.5192	2	0	Median	1.0529	1.0736	5.9552	2	0	Median	579480000	289770000	289710000	94553000	42202000	52351000	189800000	101420000	88384000	127800000	69888000	57911000	167320000	76255000	91067000	60237	220	56752	367447;367448;367449;367450;367451;367452;367453;367454;367455	496217;496218;496219;496220;496221;496222;496223;496224;496225;496226;496227;496228;496229;496230;496231;496232;496233;496234;496235;496236;496237;496238;496239;496240;496241;496242	496233			26	
YYTGNYDQYVK	1	Unmodified	1412.6248	0.62484596	5279	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.8	6.24	6	4					2	3		2	3	5	5	45.692	41.437	2	2.3578E-07	35645	160511_QHF_FH_JSI11i_2	121.73	104.5			1.0281	1.0658	17.746	14	5	Median	1.1582	0.96952	29.928	2	0	Median	0.90688	1.0488	11.551	3	1	Median	1.1919	1.2127	14.716	5	2	Median	0.91081	0.96965	19.445	4	2	Median	1258600000	606620000	651930000	162150000	70798000	91349000	237920000	111490000	126430000	607350000	314530000	292820000	251130000	109810000	141320000	60238	5279	56753	367456;367457;367458;367459;367460;367461;367462;367463;367464;367465;367466;367467;367468;367469;367470	496243;496244;496245;496246;496247;496248;496249;496250;496251;496252;496253;496254;496255;496256;496257;496258;496259	496254			17	
YYTGVVNNNEMVALQR	0	Unmodified	1869.9043	0.90433206	2540	Q14527	HLTF	Helicase-like transcription factor	yes	yes	0	0	0	0	By MS/MS		By MS/MS	By MS/MS	2	0		4								1		2	1	60.523	59.697	2	8.0101E-08	52008	160511_QHF_FH_JSI11i_2	137.16	123.73			0.88616	0.74831	11.027	4	4	Linear	1.0211	0.90128	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.77726	0.81922	12.622	2	2	Median	0.91535	0.97172	NaN	1	1	Median	127540000	66353000	61187000	27910000	12116000	15794000	0	0	0	75617000	44427000	31190000	24013000	9809600	14203000	60239	2540	56754	367471;367472;367473;367474	496260;496261;496262;496263;496264	496263			5	
YYTLFGR	0	Unmodified	918.45995	0.45995289	878	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.83	5.89		5	4						3	3	4	2	3	55.013	52.053	2	3.4194E-06	28561	160513_QHF_FH_JSI10Kac_6	132.72	112.44			0.90909	0.95077	13.363	12	2	Median	1.317	1.0926	11.436	3	0	Plateau	0.82486	1.0059	17.499	4	2	Median	0.86874	0.86172	4.7278	2	0	Median	0.87153	0.87462	11.926	3	0	Median	4842400000	2344700000	2497700000	1030100000	404120000	626020000	1583400000	834940000	748430000	912910000	443530000	469380000	1315900000	662100000	653830000	60240	878	56755	367475;367476;367477;367478;367479;367480;367481;367482;367483;367484;367485;367486	496265;496266;496267;496268;496269;496270;496271;496272;496273;496274;496275;496276;496277;496278;496279;496280;496281;496282	496282			18	
YYTLNGSK	1	Unmodified	944.46035	0.46034682	1675	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.5	6.5		3						3		1	2	2	1	21.919	16.982	2	0.0049375	14499	160511_QHF_FH_JSI11i_2	67.169	43.646			0.92728	0.97726	43.786	6	1	Median	2.8815	2.4744	NaN	1	1	Median	0.64149	0.77232	15.219	2	0	Median	0.98085	0.98482	5.5149	2	0	Median	0.89401	1.0083	NaN	1	0	Median	358800000	153240000	205560000	80073000	20326000	59747000	80817000	41886000	38931000	193190000	88655000	104540000	4713100	2370500	2342700	60241	1675	56756	367487;367488;367489;367490;367491;367492	496283;496284;496285;496286;496287	496285			5	
YYTPTISR	0	Unmodified	999.50255	0.50254598	1673	P49721	PSMB2	Proteasome subunit beta type-2	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	8.24	6.68	4	4	3				2	4	4	5	6	5	5	32.621	27.732	2	0.00063796	24394	160511_QHF_FH_JSI10i_2	101.64	48.96			1.0341	1.0374	26.805	21	0	Median	1.1395	0.97613	9.4538	5	0	Median	0.98365	1.1714	21.451	6	0	Median	1.0834	1.0771	46.019	5	0	Median	0.99874	1.0374	13.707	5	0	Median	3158800000	1573400000	1585500000	657240000	300510000	356730000	777870000	428500000	349380000	919710000	472060000	447660000	804010000	372310000	431700000	60242	1673	56757	367493;367494;367495;367496;367497;367498;367499;367500;367501;367502;367503;367504;367505;367506;367507;367508;367509;367510;367511;367512;367513	496288;496289;496290;496291;496292;496293;496294;496295;496296;496297;496298;496299;496300;496301;496302;496303;496304;496305;496306;496307;496308;496309;496310;496311	496303			24	
YYTSASGDEMVSLK	1	Unmodified	1549.697	0.69702463	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.54	6.22	10	4	3				3		4	5	8	6	5	51.76	48.087	2;3	8.5346E-66	43679	160511_QHF_FH_JSI11i_1	234.61	225.42			0.97595	0.95828	26.499	22	6	Median	1.0493	0.88186	8.7918	5	1	Median	0.82499	0.97265	31.988	8	4	Median	0.98072	0.97606	28.379	6	1	Median	0.91317	0.94816	25.494	3	0	Plateau	22274000000	11571000000	10703000000	5052300000	2526200000	2526100000	5394100000	3100600000	2293500000	5298500000	2486700000	2811800000	6528700000	3457100000	3071600000	60243	880	56758	367514;367515;367516;367517;367518;367519;367520;367521;367522;367523;367524;367525;367526;367527;367528;367529;367530;367531;367532;367533;367534;367535;367536;367537	496312;496313;496314;496315;496316;496317;496318;496319;496320;496321;496322;496323;496324;496325;496326;496327;496328;496329;496330;496331;496332;496333;496334;496335;496336;496337;496338;496339;496340;496341;496342;496343;496344;496345;496346;496347;496348;496349;496350;496351;496352;496353;496354;496355;496356;496357;496358;496359;496360;496361;496362;496363;496364;496365;496366;496367;496368;496369	496315			58	
YYTSASGDEMVSLK	1	Oxidation (M)	1565.6919	0.69193925	880	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	yes	yes	0	0	1	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	3.25	4.15	4	1	2				1			1	2	2	3	38.482	36.117	2	1.6528E-05	32760	160511_QHF_FH_JSI12i_1	125.97	112.88			0.92378	0.96824	11.94	6	1	Median	0.95066	0.77355	NaN	1	0	Median	0.8752	1.0134	1.0237	2	1	Median	0.91368	0.90351	4.3682	2	0	Median	1.0211	1.0703	NaN	1	0	Median	1748900000	904680000	844220000	287470000	143860000	143610000	593160000	336210000	256950000	413740000	216250000	197500000	454520000	208360000	246160000	60244	880	56758	367538;367539;367540;367541;367542;367543;367544;367545	496370;496371;496372;496373;496374;496375;496376;496377;496378;496379;496380;496381;496382	496375		444	13	
YYVGHKGK	2	Acetyl (K)	992.50797	0.50796571	1952;3963	P61326;Q96A72	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	no	no	1	0	0	1	By matching	By MS/MS	By MS/MS	By MS/MS	16	0									8	1	2	3	2	17.921	10.244	2;3	0.00075453	7089	160513_QHF_FH_JSI11Kac_6	72.485	55.542			0.62956	0.69018	49.747	7	0	Median	0.92861	0.79787	NaN	1	0	Median	1.0286	1.2191	6.1766	2	0	Median	0.38971	0.36923	0.41882	2	0	Median	0.58757	0.63002	12.899	2	0	Median	176170000	106330000	69840000	12141000	5768500	6372900	43888000	20663000	23225000	79680000	54771000	24909000	40465000	25132000	15333000	60245	1952;3963	56759	367546;367547;367548;367549;367550;367551;367552;367553	496383;496384;496385;496386;496387;496388;496389;496390;496391;496392	496386	1968		10	
YYVLNALK	1	Unmodified	982.54877	0.54876789	3101	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	yes	yes	0	0	0	0	By matching	By matching	By matching	By MS/MS	2.2	0.4		4	1							1	1	1	2	58.698	57.907	2	0.0070198	49831	160511_QHF_FH_JSI12i_2	60.799	35.98			0.95133	0.96187	18.208	5	1	Median	0.95251	0.81176	NaN	1	0	Median	0.74271	0.91942	NaN	1	0	Median	0.95133	0.96187	NaN	1	0	Median	1.0613	1.1389	21.843	2	1	Median	465880000	272070000	193810000	85200000	46954000	38247000	87134000	51543000	35591000	167780000	110600000	57176000	125760000	62970000	62793000	60246	3101	56760	367554;367555;367556;367557;367558	496393;496394	496393			2	
YYVSPSDLLDDK	1	Unmodified	1413.6664	0.66637643	2694	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	yes	yes	0	0	0	0	By MS/MS				1	0	1									1				72.382	71.451	2	0.010128	63549	160511_QHF_FH_JSI9i_1	46.406	36.453			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60247	2694	56761	367559	496395	496395			1	
YYVTIIDAPGHR	0	Unmodified	1403.7197	0.7197494	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	10.6	6.1	3	13	10	1			6	33	9	25	19	15	16	58.234	51.402	2;3	1.1574E-108	27549	160513_QHF_FH_JSI10Kac_6	266.91	209.63			1.0056	0.98023	29.685	70	24	Median	1.1974	0.99171	40.658	23	6	Median	0.8958	1.0402	21.615	18	5	Median	0.8786	0.88296	24.281	13	5	Median	0.81961	0.8797	20.045	16	8	Median	125890000000	61541000000	64348000000	17519000000	7870600000	9648700000	37621000000	19289000000	18331000000	34385000000	16133000000	18252000000	36363000000	18248000000	18116000000	60248	2072	56762	367560;367561;367562;367563;367564;367565;367566;367567;367568;367569;367570;367571;367572;367573;367574;367575;367576;367577;367578;367579;367580;367581;367582;367583;367584;367585;367586;367587;367588;367589;367590;367591;367592;367593;367594;367595;367596;367597;367598;367599;367600;367601;367602;367603;367604;367605;367606;367607;367608;367609;367610;367611;367612;367613;367614;367615;367616;367617;367618;367619;367620;367621;367622;367623;367624;367625;367626;367627;367628;367629;367630;367631;367632;367633;367634	496396;496397;496398;496399;496400;496401;496402;496403;496404;496405;496406;496407;496408;496409;496410;496411;496412;496413;496414;496415;496416;496417;496418;496419;496420;496421;496422;496423;496424;496425;496426;496427;496428;496429;496430;496431;496432;496433;496434;496435;496436;496437;496438;496439;496440;496441;496442;496443;496444;496445;496446;496447;496448;496449;496450;496451;496452;496453;496454;496455;496456;496457;496458;496459;496460;496461;496462;496463;496464;496465;496466;496467;496468;496469;496470;496471;496472;496473;496474;496475;496476;496477;496478;496479;496480;496481;496482;496483;496484;496485;496486;496487;496488;496489;496490;496491;496492;496493;496494;496495;496496;496497;496498;496499;496500;496501;496502;496503;496504;496505;496506;496507;496508;496509;496510;496511;496512;496513;496514;496515;496516;496517;496518;496519;496520;496521;496522;496523;496524;496525;496526;496527;496528;496529;496530;496531	496527			133	
YYVTIIDAPGHRDFIK	1	Unmodified	1906.9941	0.99413335	2072	P68104;Q5VTE0	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	yes	no	0	0	0	1	By MS/MS	By MS/MS	By MS/MS	By MS/MS	5.12	5.14		21	51						16	28	36	13	11	68.081	65.46	2;3;4	7.1801E-119	34536	160513_QHF_FH_JSI10Kac_6	264.55	235.21			0.95926	0.99893	35.375	79	28	Median	1.3674	1.1582	29.073	23	10	Median	0.82081	0.98821	41.956	32	11	Median	0.99497	0.94383	30.128	13	3	Median	0.76797	0.84285	21.911	11	4	Median	74645000000	34176000000	40468000000	11732000000	4937800000	6794400000	30382000000	15264000000	15119000000	18616000000	7742000000	10874000000	13914000000	6232800000	7681500000	60249	2072	56763	367635;367636;367637;367638;367639;367640;367641;367642;367643;367644;367645;367646;367647;367648;367649;367650;367651;367652;367653;367654;367655;367656;367657;367658;367659;367660;367661;367662;367663;367664;367665;367666;367667;367668;367669;367670;367671;367672;367673;367674;367675;367676;367677;367678;367679;367680;367681;367682;367683;367684;367685;367686;367687;367688;367689;367690;367691;367692;367693;367694;367695;367696;367697;367698;367699;367700;367701;367702;367703;367704;367705;367706;367707;367708;367709;367710;367711;367712;367713;367714;367715;367716;367717;367718;367719;367720;367721;367722	496532;496533;496534;496535;496536;496537;496538;496539;496540;496541;496542;496543;496544;496545;496546;496547;496548;496549;496550;496551;496552;496553;496554;496555;496556;496557;496558;496559;496560;496561;496562;496563;496564;496565;496566;496567;496568;496569;496570;496571;496572;496573;496574;496575;496576;496577;496578;496579;496580;496581;496582;496583;496584;496585;496586;496587;496588;496589;496590;496591;496592;496593;496594;496595;496596;496597;496598;496599;496600;496601;496602;496603;496604;496605;496606;496607;496608;496609;496610;496611;496612;496613;496614;496615;496616;496617;496618;496619;496620;496621;496622;496623;496624;496625;496626;496627;496628;496629;496630;496631;496632;496633;496634;496635;496636;496637;496638;496639;496640;496641;496642;496643;496644;496645;496646;496647;496648;496649;496650;496651;496652;496653;496654;496655;496656;496657;496658;496659;496660;496661;496662;496663;496664;496665;496666;496667;496668;496669;496670;496671;496672;496673;496674;496675;496676;496677;496678;496679;496680;496681;496682;496683;496684;496685;496686;496687;496688;496689;496690;496691;496692;496693;496694;496695;496696;496697;496698;496699;496700;496701;496702;496703;496704;496705;496706;496707;496708;496709;496710;496711;496712;496713;496714;496715;496716;496717;496718;496719;496720;496721;496722;496723;496724;496725;496726;496727;496728;496729	496723			196	
YYYGNLIAVSNSFLAYAIR	0	Unmodified	2197.1208	0.12079042	3100	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			97.217	91.496	3	1.1874E-16	53222	160513_QHF_FH_JSI10Kac_6	139.08	124.61			0.64352	0.76607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	0.64352	0.76607	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	98431000	54419000	44012000	0	0	0	98431000	54419000	44012000	0	0	0	0	0	0	60250	3100	56764	367723	496730	496730			1	
YYYIPQYK	1	Unmodified	1136.5542	0.5542472	3500	Q8N183	NDUFAF2	Mimitin, mitochondrial	yes	yes	0	0	0	0	By MS/MS	By MS/MS	By MS/MS	By MS/MS	1.86	0.639	2	4	1							2	2	2	1	52.419	51.519	2	0.0031875	45407	160511_QHF_FH_JSI10i_2	74.439	52.291			1.1645	0.94214	37.723	7	0	Median	1.2436	1.0494	15.555	2	0	Median	1.143	1.38	76.433	2	0	Median	1.0727	1.0575	33.657	2	0	Median	0.82976	0.94214	NaN	1	0	Median	720950000	324740000	396200000	119230000	51604000	67626000	212480000	103800000	108680000	252120000	111090000	141030000	137120000	58251000	78868000	60251	3500	56765	367724;367725;367726;367727;367728;367729;367730	496731;496732;496733;496734;496735;496736;496737;496738;496739	496738			9	
YYYQGCASWK	1	Unmodified	1324.5547	0.55465791	4628	Q9H0D6	XRN2	5'-3' exoribonuclease 2	yes	yes	0	0	0	0			By MS/MS		16	0									1			1		49.296	39.594	2	0.025682	21533	160513_QHF_FH_JSI11Kac_6	48.796	44.184			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60252	4628	56766	367731	496740	496740			1	
YYYVPADFVEYEK	1	Unmodified	1684.7661	0.76609047	3932	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	yes	yes	0	0	0	0				By MS/MS	1	0	1												1	80.415	79.891	2	0.001973	72802	160511_QHF_FH_JSI12i_1	59.067	44.648			NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60253	3932	56767	367732	496741	496741			1	
YYYWAVNPQDR	0	Unmodified	1473.6677	0.66771383	1718	P50851	LRBA	Lipopolysaccharide-responsive and beige-like anchor protein	yes	yes	0	0	0	0		By MS/MS			16	0									1		1			65.16	56.993	2	0.0044693	31379	160513_QHF_FH_JSI10Kac_6	70.552	41.594			2.1397	2.5531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	2.1397	2.5531	NaN	1	1	Median	NaN	NaN	NaN	0	0	Median	NaN	NaN	NaN	0	0	Median	6459400	1477600	4981800	0	0	0	6459400	1477600	4981800	0	0	0	0	0	0	60254	1718	56768	367733	496742	496742			1	
